607 220 297 0 43 chr3 3002222 3002338 -156597445 + (CACAG)n Simple_repeat Simple_repeat 3 113 0 1 607 247 287 0 43 chr3 3003385 3003549 -156596234 + (CAGTA)n Simple_repeat Simple_repeat 5 161 0 2 607 296 299 6 39 chr3 3008659 3008840 -156590943 + (CACAG)n Simple_repeat Simple_repeat 2 176 0 3 607 212 304 7 45 chr3 3009837 3009992 -156589791 + (CACAG)n Simple_repeat Simple_repeat 2 150 0 4 607 228 111 0 53 chr3 3010426 3010483 -156589300 + (CAGTA)n Simple_repeat Simple_repeat 1 54 0 5 607 202 339 0 43 chr3 3011735 3011920 -156587863 + (CACAG)n Simple_repeat Simple_repeat 2 178 0 6 607 297 255 0 73 chr3 3013550 3013728 -156586055 + (CAGTA)n Simple_repeat Simple_repeat 5 169 0 7 608 203 204 0 36 chr3 3017180 3017236 -156582547 + (CACAG)n Simple_repeat Simple_repeat 4 57 0 8 608 2761 34 6 27 chr3 3017261 3017595 -156582188 - IAPLTR2b LTR ERVK 0 327 1 9 608 14259 71 10 7 chr3 3017597 3019433 -156580350 - IAPEz-int LTR ERVK -2 6479 4639 9 608 1775 93 13 0 chr3 3019413 3019650 -156580133 - IAPEY3-int LTR ERVK -5183 2497 2258 1 608 361 123 0 0 chr3 3019655 3019712 -156580071 - B1_Mus1 SINE Alu -91 57 1 1 608 4963 95 66 54 chr3 3019713 3020856 -156578927 - IAPEz-int LTR ERVK -5487 994 9 9 608 2721 37 6 27 chr3 3020857 3021191 -156578592 - IAPLTR2b LTR ERVK 0 327 1 9 608 224 297 0 46 chr3 3021986 3022159 -156577624 + (CAGTA)n Simple_repeat Simple_repeat 5 169 0 1 608 208 235 0 45 chr3 3024167 3024256 -156575527 + (CAGTA)n Simple_repeat Simple_repeat 5 89 0 1 608 245 318 0 37 chr3 3025350 3025513 -156574270 + (CACAG)n Simple_repeat Simple_repeat 2 158 0 1 608 214 310 0 44 chr3 3026845 3026980 -156572803 + (CACAG)n Simple_repeat Simple_repeat 2 130 0 1 608 218 310 0 46 chr3 3027162 3027314 -156572469 + (CAGTA)n Simple_repeat Simple_repeat 5 149 0 1 608 208 330 0 43 chr3 3027367 3027554 -156572229 + (CACAG)n Simple_repeat Simple_repeat 2 180 0 1 608 227 292 0 44 chr3 3028885 3029021 -156570762 + (CAGTA)n Simple_repeat Simple_repeat 5 134 0 1 608 255 293 0 41 chr3 3029274 3029420 -156570363 + (CAGTA)n Simple_repeat Simple_repeat 5 144 0 1 608 207 266 9 44 chr3 3029713 3029827 -156569956 + (CAGTA)n Simple_repeat Simple_repeat 5 114 0 2 608 268 296 5 43 chr3 3032957 3033141 -156566642 + (CACAG)n Simple_repeat Simple_repeat 2 178 0 2 608 204 281 8 42 chr3 3033067 3033186 -156566597 + (CAGTA)n Simple_repeat Simple_repeat 5 119 0 2 608 14914 192 137 14 chr3 3033630 3036867 -156562916 - L1VL4 LINE L1 -566 5320 1646 2 608 1633 21 21 0 chr3 3036867 3037056 -156562727 - B2_Mm1a SINE B2 0 193 1 2 608 14914 200 104 39 chr3 3037056 3038079 -156561704 - L1VL4 LINE L1 -4241 1645 400 2 608 523 229 16 24 chr3 3038281 3038406 -156561377 + B1_Mur1 SINE Alu 26 149 0 2 608 1046 224 33 4 chr3 3038611 3038853 -156560930 + MTD LTR MaLR 3 251 -168 2 608 1413 189 67 10 chr3 3039678 3039883 -156559900 - MT2B LTR ERVL -44 557 286 2 608 282 29 0 0 chr3 3039883 3039918 -156559865 + (TGAA)n Simple_repeat Simple_repeat 2 36 0 2 608 1413 235 90 101 chr3 3039918 3040145 -156559638 - MT2B LTR ERVL -244 357 25 2 608 549 246 0 8 chr3 3040156 3040279 -156559504 - B1_Mur3 SINE Alu -15 134 13 2 608 327 283 17 102 chr3 3040287 3040332 -156559451 - MTE2a LTR MaLR -200 179 135 3 608 931 94 71 0 chr3 3040332 3040459 -156559324 + B1_Mus2 SINE Alu 1 136 -11 3 608 309 51 0 0 chr3 3040461 3040500 -156559283 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 3 608 327 283 17 102 chr3 3040500 3040569 -156559214 - MTE2a LTR MaLR -245 134 72 3 608 1341 185 43 34 chr3 3041147 3041471 -156558312 + ORR1A4 LTR MaLR 3 329 0 3 608 332 257 37 68 chr3 3041755 3041918 -156557865 + RLTR43A LTR ERVK 201 358 -6 3 608 406 49 16 16 chr3 3042297 3042359 -156557424 + (TAAAA)n Simple_repeat Simple_repeat 1 62 0 3 608 1681 164 147 16 chr3 3042612 3042979 -156556804 + RMER16-int LTR ERVK 256 670 -4736 3 608 9100 77 23 5 chr3 3043091 3044402 -156555381 - L1Md_F3 LINE L1 -12 6572 5235 3 608 405 0 0 0 chr3 3044402 3044447 -156555336 + (TA)n Simple_repeat Simple_repeat 2 46 0 3 608 9100 93 12 2 chr3 3044447 3045065 -156554718 - L1Md_F3 LINE L1 -649 5234 4611 3 608 12617 63 5 8 chr3 3045061 3046725 -156553058 + L1Md_F3 LINE L1 2923 4581 -1302 3 608 739 176 40 0 chr3 3046763 3046911 -156552872 + RMER16-int LTR ERVK 1090 1243 -4163 3 608 889 203 22 0 chr3 3046927 3047109 -156552674 + ETnERV2-int LTR ERVK 5302 5487 -1919 3 608 1353 213 34 78 chr3 3047152 3047581 -156552202 + ETnERV2-int LTR ERVK 2339 2694 -4712 4 608 4482 98 5 5 chr3 3047615 3048243 -156551540 + L1Md_F2 LINE L1 5955 6582 0 4 608 380 186 0 0 chr3 3048247 3048306 -156551477 + RMER16-int LTR ERVK 1575 1633 -3773 3 608 2353 198 41 17 chr3 3048309 3048886 -156550897 + RMER16-int LTR ERVK 2326 2839 -2567 3 608 269 288 9 0 chr3 3048901 3049012 -156550771 + RMER16-int LTR ERVK 3061 3172 -4081 3 608 968 237 144 15 chr3 3049461 3049795 -156549988 + RLTR30 LTR ERV1 1 377 -2 4 608 17546 162 103 37 chr3 3050311 3054251 -156545532 - Lx2B LINE L1 -9 6991 3008 4 608 961 103 13 6 chr3 3054251 3054408 -156545375 + (TTTC)n Simple_repeat Simple_repeat 3 160 0 4 608 1018 130 0 0 chr3 3054411 3054580 -156545203 - B2_Mm2 SINE B2 -26 169 1 4 608 17546 167 136 54 chr3 3054580 3055269 -156544514 - Lx2B LINE L1 -2879 3004 1807 4 608 2437 132 28 8 chr3 3055269 3055657 -156544126 - MTA_Mm LTR MaLR 0 396 1 4 608 17546 197 77 73 chr3 3055657 3056980 -156542803 - Lx2B LINE L1 -4080 1806 356 4 608 2201 190 82 7 chr3 3057015 3057454 -156542329 + RMER17B LTR ERVK 487 958 0 4 608 260 325 0 12 chr3 3057784 3057865 -156541918 + MTE2b LTR MaLR 9 88 -291 4 608 1426 148 121 73 chr3 3057917 3058231 -156541552 + ORR1A4 LTR MaLR 1 329 0 4 608 1715 200 16 66 chr3 3058373 3058737 -156541046 - ORR1B1 LTR MaLR -8 386 41 5 608 1006 128 0 22 chr3 3058780 3058963 -156540820 + GA-rich Low_complexity Low_complexity 2 180 0 5 608 744 99 0 0 chr3 3059375 3059486 -156540297 + (CA)n Simple_repeat Simple_repeat 2 112 0 5 608 1246 232 138 9 chr3 3059601 3060057 -156539726 - RLTR21 LTR ERVK -321 1251 737 5 608 543 268 94 47 chr3 3060070 3060305 -156539478 - Lx2B LINE L1 0 7000 6755 5 608 1168 219 20 16 chr3 3060306 3060561 -156539222 - RLTR21 LTR ERVK -1316 256 1 5 608 9148 179 30 21 chr3 3060624 3062606 -156537177 - Lx2 LINE L1 -997 6000 4019 5 608 4606 80 26 2 chr3 3062611 3063184 -156536599 + LTRIS_Mus LTR ERV1 1 587 0 5 608 2883 130 52 33 chr3 3063184 3063947 -156535836 + MuRRS-int LTR ERV1 1 1054 -3636 5 608 33648 69 20 0 chr3 3063945 3068176 -156531607 - IAPEY3-int LTR ERVK -1306 6374 2061 5 608 7000 113 15 8 chr3 3068182 3069211 -156530572 - IAPLTR4_I LTR ERVK -413 1057 22 5 608 2871 69 0 0 chr3 3069211 3069543 -156530240 - IAPEY3_LTR LTR ERVK 0 332 1 5 608 5848 88 28 18 chr3 3069543 3070543 -156529240 - L1Md_F LINE L1 -4488 1395 387 6 608 381 211 55 31 chr3 3070874 3071001 -156528782 - RLTR43A LTR ERVK -34 330 201 6 608 1701 166 40 31 chr3 3071272 3071596 -156528187 - ORR1A4 LTR MaLR 0 329 3 6 608 324 127 0 0 chr3 3072211 3072266 -156527517 + (TTTTG)n Simple_repeat Simple_repeat 1 55 0 6 608 912 123 63 28 chr3 3072266 3072408 -156527375 - B1_Mus2 SINE Alu 0 147 1 6 608 554 279 16 0 chr3 3072455 3072584 -156527199 + B1_Mur3 SINE Alu 4 134 -15 6 608 1642 192 71 32 chr3 3072595 3073049 -156526734 + MT2B LTR ERVL 25 562 -39 6 608 292 197 0 32 chr3 3073767 3073830 -156525953 + B1F1 SINE Alu 89 149 0 6 608 1143 219 34 4 chr3 3073874 3074112 -156525671 - MTD LTR MaLR -174 245 1 6 608 521 238 16 32 chr3 3074331 3074457 -156525326 - B1_Mur2 SINE Alu 0 149 26 6 608 21223 196 28 25 chr3 3074732 3080079 -156519704 + Lx2 LINE L1 656 6000 -997 7 608 1206 265 226 24 chr3 3080143 3080992 -156518791 + RLTR21 LTR ERVK 1 1021 -551 7 608 3598 172 32 8 chr3 3080992 3081736 -156518047 + Lx2B LINE L1 3102 3863 -2014 7 608 11125 102 5 19 chr3 3081736 3083938 -156515845 + L1Md_F2 LINE L1 625 2791 -3092 7 608 38420 45 0 2 chr3 3083940 3090108 -156509675 - L1Md_T LINE L1 0 6585 335 7 608 20039 91 8 2 chr3 3090104 3092901 -156506882 + L1Md_F2 LINE L1 2773 5585 -298 7 608 7854 75 11 2 chr3 3092902 3093886 -156505897 + L1Md_F2 LINE L1 5587 6579 -3 7 608 10011 184 10 30 chr3 3093886 3095371 -156504412 + Lx2B LINE L1 3863 5310 -576 7 608 3156 32 0 3 chr3 3095371 3095718 -156504065 + ORR1A0 LTR MaLR 1 346 0 7 608 10011 162 51 7 chr3 3095718 3097329 -156502454 + Lx2B LINE L1 5311 6991 -9 7 608 192 125 0 0 chr3 3097410 3097442 -156502341 + (GGGAGA)n Simple_repeat Simple_repeat 6 37 0 7 608 221 229 14 41 chr3 3097704 3097777 -156502006 + GA-rich Low_complexity Low_complexity 3 73 0 7 608 1274 235 93 9 chr3 3097837 3098181 -156501602 - RLTR30 LTR ERV1 -6 373 1 7 608 186 132 37 19 chr3 3098577 3098631 -156501152 + (CAAA)n Simple_repeat Simple_repeat 2 56 0 7 608 377 288 197 21 chr3 3099454 3099642 -156500141 + ID_B1 SINE B4 2 222 -2 8 608 237 33 0 0 chr3 3099658 3099688 -156500095 + (CAA)n Simple_repeat Simple_repeat 1 30 0 8 608 504 149 0 0 chr3 3099790 3099864 -156499919 - tRNA-Pro-CCY tRNA tRNA -1 74 1 8 608 500 101 0 0 chr3 3100221 3100290 -156499493 - tRNA-Lys-AAG tRNA tRNA -7 69 1 8 608 225 281 52 17 chr3 3101166 3101224 -156498559 + RMER10B LTR ERVL 99 158 -240 8 608 738 218 201 0 chr3 3101707 3101881 -156497902 - B3 SINE B2 -6 210 2 8 608 528 93 0 23 chr3 3101966 3102054 -156497729 + B2_Mm1a SINE B2 108 193 0 8 608 2847 66 0 0 chr3 3102148 3102480 -156497303 + IAPEY3_LTR LTR ERVK 1 332 0 8 608 21276 92 9 3 chr3 3102480 3105327 -156494456 + IAPEY3-int LTR ERVK 1 2864 -4816 8 608 32124 65 14 2 chr3 3105353 3109635 -156490148 + IAPEY3-int LTR ERVK 3345 7680 0 8 608 2742 93 0 0 chr3 3109635 3109967 -156489816 + IAPEY3_LTR LTR ERVK 1 332 0 8 608 21896 91 6 4 chr3 3109967 3113944 -156485839 + L1Md_F2 LINE L1 1390 5359 -524 8 608 1331 61 0 0 chr3 3113932 3114113 -156485670 + L1Md_F2 LINE L1 5703 5883 -699 8 608 7462 74 11 0 chr3 3114113 3115156 -156484627 - ORR1A0-int LTR MaLR -736 1056 2 8 608 2545 58 61 0 chr3 3115157 3115483 -156484300 - ORR1A0 LTR MaLR 0 346 1 8 608 335 309 65 14 chr3 3115511 3115649 -156484134 + ETnERV2-int LTR ERVK 524 668 -5469 9 608 3579 197 18 75 chr3 3115655 3115822 -156483961 + ETnERV2-int LTR ERVK 1727 1887 -5519 9 608 298 0 48 0 chr3 3115822 3115864 -156483919 + (TA)n Simple_repeat Simple_repeat 2 45 0 9 608 823 133 0 49 chr3 3115865 3116007 -156483776 - B1_Mus2 SINE Alu -12 135 1 9 608 3579 197 18 75 chr3 3116007 3116763 -156483020 + ETnERV2-int LTR ERVK 1888 2598 -4808 9 608 1223 86 17 17 chr3 3116766 3116943 -156482840 - B2_Mm2 SINE B2 -5 190 14 9 608 4431 96 0 9 chr3 3117051 3117683 -156482100 + L1Md_F2 LINE L1 5955 6580 -2 9 608 2223 194 62 24 chr3 3117747 3118324 -156481459 + ETnERV2-int LTR ERVK 3299 3897 -3509 9 608 1774 279 25 15 chr3 3118346 3119040 -156480743 + ETnERV2-int LTR ERVK 4083 4523 -2883 9 608 1457 215 49 14 chr3 3119109 3119458 -156480325 + ETnERV2-int LTR ERVK 5121 5481 -1925 9 608 529 198 0 0 chr3 3119558 3119649 -156480134 + ORR1A1 LTR MaLR 143 233 -113 9 608 385 178 0 82 chr3 3119696 3119892 -156479891 + CT-rich Low_complexity Low_complexity 1 180 0 9 608 316 257 145 14 chr3 3119899 3120037 -156479746 - HAL1-3A_ME LINE L1 -419 2439 2284 9 608 450 215 13 13 chr3 3120044 3120195 -156479588 + CT-rich Low_complexity Low_complexity 4 154 0 9 608 495 186 8 40 chr3 3120211 3120700 -156479083 + CT-rich Low_complexity Low_complexity 1 473 0 9 608 331 288 111 35 chr3 3120700 3120844 -156478939 - HAL1-3A_ME LINE L1 -418 2440 2286 1 608 644 178 0 29 chr3 3120881 3121055 -156478728 + CT-rich Low_complexity Low_complexity 3 171 0 1 608 333 200 19 19 chr3 3121088 3121195 -156478588 + CT-rich Low_complexity Low_complexity 3 109 0 1 608 944 111 0 0 chr3 3121201 3121336 -156478447 - B1_Mus1 SINE Alu -6 142 8 1 608 451 152 0 0 chr3 3121327 3121406 -156478377 + ORR1A1 LTR MaLR 268 346 0 9 608 362 182 0 43 chr3 3121406 3121453 -156478330 + B1F1 SINE Alu 90 136 -13 1 608 198 0 0 0 chr3 3121453 3121475 -156478308 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 1 608 362 182 0 43 chr3 3121475 3121488 -156478295 + B1F1 SINE Alu 137 147 -2 1 608 320 234 230 18 chr3 3121979 3122092 -156477691 - B1_Mus2 SINE Alu -1 146 10 1 608 630 47 0 0 chr3 3122188 3122274 -156477509 - B2_Mm1a SINE B2 0 193 108 1 608 698 251 95 0 chr3 3122358 3122538 -156477245 + B3 SINE B2 1 198 0 1 608 529 97 0 0 chr3 3123739 3123811 -156475972 + tRNA-Lys-AAG tRNA tRNA 1 72 -4 1 608 457 162 0 0 chr3 3124166 3124240 -156475543 + tRNA-Pro-CCY tRNA tRNA 1 74 -1 1 608 443 277 197 21 chr3 3124353 3124541 -156475242 - ID_B1 SINE B4 -2 222 2 1 608 211 271 119 0 chr3 3125946 3126005 -156473778 - PB1D10 SINE Alu -34 83 18 1 608 336 77 0 0 chr3 3126022 3126074 -156473709 + (T)n Simple_repeat Simple_repeat 1 52 0 1 608 432 45 22 43 chr3 3126140 3126232 -156473551 + (TTTTG)n Simple_repeat Simple_repeat 2 91 0 1 608 1183 250 96 0 chr3 3126616 3126960 -156472823 + RLTR30 LTR ERV1 2 378 -1 1 608 260 299 13 0 chr3 3127027 3127104 -156472679 + CT-rich Low_complexity Low_complexity 2 79 0 1 608 14456 172 103 42 chr3 3127476 3131431 -156468352 - Lx2B LINE L1 -9 6991 3004 1 608 1164 106 0 0 chr3 3131431 3131610 -156468173 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 1 608 1055 148 0 0 chr3 3131616 3131785 -156467998 - B2_Mm2 SINE B2 -26 169 1 1 608 14456 183 134 62 chr3 3131785 3132477 -156467306 - Lx2B LINE L1 -2874 2994 1807 1 608 2546 112 28 15 chr3 3132477 3132868 -156466915 - MTA_Mm LTR MaLR 0 396 1 1 608 14456 198 78 50 chr3 3132868 3134203 -156465580 - Lx2B LINE L1 -4071 1806 356 1 608 2056 196 87 2 chr3 3134231 3134666 -156465117 + RMER17B LTR ERVK 487 958 0 1 608 259 251 0 31 chr3 3134994 3135068 -156464715 + MTE2a LTR MaLR 13 84 -295 1 608 1394 149 103 78 chr3 3135125 3135446 -156464337 + ORR1A4 LTR MaLR 1 329 0 1 608 1589 201 22 69 chr3 3135588 3135951 -156463832 - ORR1B1 LTR MaLR -8 386 41 1 608 961 122 11 11 chr3 3135993 3136167 -156463616 + (GAAA)n Simple_repeat Simple_repeat 1 174 0 1 608 225 83 0 0 chr3 3136388 3136424 -156463359 + (GA)n Simple_repeat Simple_repeat 1 36 0 1 608 195 129 0 0 chr3 3136599 3136630 -156463153 + (CATA)n Simple_repeat Simple_repeat 4 34 0 1 608 270 219 0 0 chr3 3136763 3136827 -156462956 + (TA)n Simple_repeat Simple_repeat 1 64 0 1 608 1180 229 29 4 chr3 3137066 3137311 -156462472 + MTD LTR MaLR 1 251 -168 1 608 332 220 3 5 chr3 3137347 3137424 -156462359 - B1F1 SINE Alu 0 149 45 1 608 230 154 0 0 chr3 3137407 3137446 -156462337 + MTD LTR MaLR 381 419 0 1 608 1519 168 70 10 chr3 3138135 3138338 -156461445 - MT2B LTR ERVL -44 557 286 1 608 243 0 0 0 chr3 3138338 3138365 -156461418 + (TGAA)n Simple_repeat Simple_repeat 2 28 0 1 608 1519 213 92 104 chr3 3138365 3138592 -156461191 - MT2B LTR ERVL -244 357 25 1 608 628 238 0 8 chr3 3138603 3138726 -156461057 - B1_Mur3 SINE Alu -15 134 13 1 608 320 220 20 108 chr3 3138635 3138737 -156461046 - MT2B LTR ERVL -346 255 163 1 608 855 103 87 0 chr3 3138779 3138905 -156460878 + B1_Mus2 SINE Alu 1 137 -10 1 608 221 0 0 33 chr3 3138905 3138935 -156460848 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1 608 1515 167 46 34 chr3 3139578 3139901 -156459882 + ORR1A4 LTR MaLR 3 329 0 1 608 432 256 31 43 chr3 3140185 3140348 -156459435 + RLTR43A LTR ERVK 201 361 -3 1 608 617 127 18 0 chr3 3140714 3140824 -156458959 + (GAAAA)n Simple_repeat Simple_repeat 4 115 0 1 608 1756 188 149 38 chr3 3141074 3141578 -156458205 + ETnERV2-int LTR ERVK 256 815 -4591 1 608 566 230 18 18 chr3 3141588 3141752 -156458031 + ETnERV2-int LTR ERVK 1090 1253 -4153 1 608 356 59 20 0 chr3 3141761 3141812 -156457971 + (TA)n Simple_repeat Simple_repeat 2 53 0 1 608 856 164 0 0 chr3 3141812 3141946 -156457837 - B1_Mus1 SINE Alu -10 138 5 1 608 3641 191 17 63 chr3 3141949 3142794 -156456989 + ETnERV2-int LTR ERVK 1889 2694 -4712 1 608 4028 123 3 17 chr3 3142828 3143465 -156456318 + L1Md_F2 LINE L1 5955 6582 0 1 608 307 193 0 0 chr3 3143465 3143528 -156456255 + ETnERV2-int LTR ERVK 1580 1633 -3773 1 608 2214 205 56 21 chr3 3143529 3144099 -156455684 + ETnERV2-int LTR ERVK 3299 3879 -3527 1 608 2057 259 27 18 chr3 3144129 3144834 -156454949 + ETnERV2-int LTR ERVK 4083 4533 -2873 1 608 1504 243 0 14 chr3 3144894 3145261 -156454522 + ETnERV2-int LTR ERVK 5121 5482 -1924 1 608 592 99 0 0 chr3 3145366 3145447 -156454336 + ORR1A1 LTR MaLR 143 223 -123 1 608 234 109 0 89 chr3 3145510 3145611 -156454172 + CT-rich Low_complexity Low_complexity 1 92 0 1 9 831 90 25 19 chr3 3145600 3145759 -156454024 + (TTCCC)n Simple_repeat Simple_repeat 3 162 0 1 609 964 112 0 32 chr3 3145760 3145945 -156453838 + (TTCC)n Simple_repeat Simple_repeat 2 180 0 1 609 185 274 0 14 chr3 3146001 3146075 -156453708 + C-rich Low_complexity Low_complexity 5 77 0 1 609 482 173 5 58 chr3 3146078 3146268 -156453515 + CT-rich Low_complexity Low_complexity 1 180 0 1 609 305 316 42 25 chr3 3146273 3146393 -156453390 - HAL1-3A_ME LINE L1 -70 2788 2667 1 609 195 157 0 78 chr3 3146411 3146501 -156453282 + CT-rich Low_complexity Low_complexity 3 85 0 1 609 369 266 104 30 chr3 3146545 3146754 -156453029 - HAL1-3A_ME LINE L1 -419 2439 2284 1 609 302 285 148 37 chr3 3146745 3146880 -156452903 - HAL1-3A_ME LINE L1 -417 2441 2292 1 609 848 141 0 0 chr3 3146882 3147017 -156452766 - B1_Mus1 SINE Alu -6 142 8 1 609 490 140 0 23 chr3 3146999 3147087 -156452696 + ORR1A1 LTR MaLR 261 346 0 1 609 334 212 0 29 chr3 3147087 3147134 -156452649 + B1F1 SINE Alu 90 136 -13 1 609 243 0 0 0 chr3 3147134 3147161 -156452622 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 1 609 334 212 0 29 chr3 3147161 3147173 -156452610 + B1F1 SINE Alu 137 147 -2 1 609 267 218 237 35 chr3 3147671 3147707 -156452076 - B1_Mus2 SINE Alu -1 146 11 1 609 269 208 65 65 chr3 3147707 3147784 -156451999 - MT2B LTR ERVL -350 251 175 1 609 572 93 0 0 chr3 3147885 3147971 -156451812 - B2_Mm1a SINE B2 0 193 108 1 609 624 301 93 4 chr3 3148056 3148236 -156451547 + B3 SINE B2 1 192 -6 1 609 609 55 0 0 chr3 3149492 3149565 -156450218 + tRNA-Lys-AAG tRNA tRNA 1 73 -3 1 609 262 200 106 15 chr3 3149918 3149984 -156449799 + tRNA-Pro-CCY tRNA tRNA 1 72 -3 1 609 381 277 197 21 chr3 3150110 3150298 -156449485 - ID_B1 SINE B4 -2 222 2 1 609 774 152 14 0 chr3 3150516 3150661 -156449122 - L1VL4 LINE L1 -1183 2376 2230 1 609 1469 91 60 4 chr3 3150668 3150934 -156448849 - L1VL4 LINE L1 -1827 1732 1452 1 609 2407 122 28 10 chr3 3150935 3151324 -156448459 - MTA_Mm LTR MaLR 0 396 1 1 609 3663 77 26 0 chr3 3151328 3151976 -156447807 - L1VL4 LINE L1 -2110 1449 780 1 609 2564 202 42 11 chr3 3151973 3152651 -156447132 - L1VL4 LINE L1 -5627 675 1 1 609 359 290 11 0 chr3 3153750 3153843 -156445940 - RMER15 LTR ERVL -86 489 396 1 609 3909 213 46 53 chr3 3154188 3155142 -156444641 + RMER17B LTR ERVK 1 947 -11 1 609 229 391 78 21 chr3 3155261 3155454 -156444329 - MLT1K LTR MaLR -255 340 137 1 609 1479 145 100 72 chr3 3155615 3155935 -156443848 + ORR1A4 LTR MaLR 1 329 0 1 609 1733 181 16 71 chr3 3156077 3156445 -156443338 - ORR1B1 LTR MaLR -8 386 39 1 609 799 192 6 6 chr3 3156491 3156669 -156443114 + GA-rich Low_complexity Low_complexity 3 180 0 1 609 931 270 120 54 chr3 3156898 3157246 -156442537 - RLTR21 LTR ERVK -241 1331 1028 1 609 453 19 0 0 chr3 3157246 3157300 -156442483 + (CA)n Simple_repeat Simple_repeat 2 55 0 1 609 931 260 145 42 chr3 3157300 3157672 -156442111 - RLTR21 LTR ERVK -403 1169 737 1 609 469 316 91 14 chr3 3157703 3157912 -156441871 - Lx2B LINE L1 -19 6981 6757 1 609 1225 228 16 12 chr3 3157913 3158170 -156441613 - RLTR21 LTR ERVK -1314 258 1 1 609 20400 185 29 18 chr3 3158233 3163418 -156436365 - Lx2 LINE L1 -997 6000 776 1 609 480 287 0 0 chr3 3163806 3163928 -156435855 + B1_Mm SINE Alu 26 147 0 1 609 1105 228 34 4 chr3 3164144 3164382 -156435401 + MTD LTR MaLR 1 245 -174 1 609 298 254 0 6 chr3 3164420 3164498 -156435285 - B1F1 SINE Alu 0 149 45 1 609 1531 179 71 10 chr3 3165214 3165418 -156434365 - MT2B LTR ERVL -44 557 286 1 609 207 0 0 0 chr3 3165418 3165441 -156434342 + (TGAA)n Simple_repeat Simple_repeat 2 24 0 1 609 1531 210 91 99 chr3 3165441 3165668 -156434115 - MT2B LTR ERVL -244 357 25 1 609 502 282 0 8 chr3 3165679 3165811 -156433972 - B1_Mur4 SINE Alu -15 135 5 1 609 792 129 76 0 chr3 3165855 3165987 -156433796 + B1_Mus1 SINE Alu 1 142 -6 1 609 231 88 0 0 chr3 3165990 3166024 -156433759 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 1 609 232 261 44 44 chr3 3166029 3166097 -156433686 - MTE2a LTR MaLR -240 139 72 1 609 1552 154 47 31 chr3 3166670 3166992 -156432791 + ORR1A4 LTR MaLR 3 329 0 1 609 459 167 19 29 chr3 3167289 3167394 -156432389 - L1Md_F2 LINE L1 0 6582 6479 1 609 304 315 0 53 chr3 3167403 3167517 -156432266 + RLTR43A LTR ERVK 257 364 0 1 609 459 35 0 0 chr3 3167889 3167946 -156431837 + (TAAAA)n Simple_repeat Simple_repeat 1 57 0 1 609 22 0 0 0 chr3 3168046 3168068 -156431715 + AT_rich Low_complexity Low_complexity 1 22 0 1 609 1860 178 120 18 chr3 3168211 3168728 -156431055 + ETnERV2-int LTR ERVK 192 674 -5463 1 609 822 166 26 7 chr3 3168727 3168879 -156430904 + ETnERV2-int LTR ERVK 1090 1244 -4162 1 609 921 110 22 0 chr3 3168889 3169025 -156430758 - B1_Mus1 SINE Alu -9 139 1 1 609 3383 209 43 68 chr3 3169025 3169836 -156429947 + ETnERV2-int LTR ERVK 1890 2679 -4727 1 609 4357 116 5 11 chr3 3169836 3170465 -156429318 + L1Md_F2 LINE L1 5955 6579 -3 1 609 3383 209 43 68 chr3 3170465 3170534 -156429249 + ETnERV2-int LTR ERVK 2680 2748 -4658 1 609 235 170 43 0 chr3 3170534 3170581 -156429202 + GA-rich Low_complexity Low_complexity 3 51 0 1 609 991 188 36 0 chr3 3170582 3170774 -156429009 + ETnERV2-int LTR ERVK 3304 3502 -3904 1 609 345 24 0 0 chr3 3171197 3171239 -156428544 + (TATG)n Simple_repeat Simple_repeat 3 44 0 1 609 506 84 0 0 chr3 3171239 3171322 -156428461 - B2_Mm1a SINE B2 -3 190 108 1 609 717 212 205 6 chr3 3171407 3171578 -156428205 + B3 SINE B2 2 206 -10 1 609 4218 196 44 58 chr3 3171651 3172622 -156427161 + RMER17B LTR ERVK 1 958 0 1 609 261 258 0 15 chr3 3172945 3173012 -156426771 + ORR1B1 LTR MaLR 9 74 -305 1 609 1454 172 103 72 chr3 3173074 3173393 -156426390 + ORR1A4 LTR MaLR 1 329 0 1 609 1597 189 36 72 chr3 3173535 3173895 -156425888 - ORR1B1 LTR MaLR -8 386 40 1 609 797 190 0 6 chr3 3173938 3174113 -156425670 + GA-rich Low_complexity Low_complexity 2 175 0 1 609 2365 170 163 9 chr3 3174116 3174472 -156425311 + Lx2 LINE L1 5263 5659 -224 1 609 603 0 0 0 chr3 3174472 3174539 -156425244 + (TA)n Simple_repeat Simple_repeat 1 67 0 2 609 2365 164 132 4 chr3 3174539 3174858 -156424925 + Lx2 LINE L1 5660 5998 -999 1 609 1266 224 12 8 chr3 3174921 3175178 -156424605 + RLTR21 LTR ERVK 1 258 -1314 2 609 541 300 88 18 chr3 3175178 3175395 -156424388 + Lx2B LINE L1 6756 6987 -13 2 609 1085 254 147 29 chr3 3175412 3175928 -156423855 + RLTR21 LTR ERVK 729 1305 -267 2 609 780 157 6 12 chr3 3176366 3176534 -156423249 + CT-rich Low_complexity Low_complexity 3 169 0 2 609 1546 216 16 71 chr3 3176574 3176942 -156422841 + ORR1B1 LTR MaLR 39 386 -8 1 609 1394 164 93 77 chr3 3177084 3177132 -156422651 - ORR1A4 LTR MaLR 0 329 282 2 609 2640 95 19 182 chr3 3177132 3177699 -156422084 + IAPLTR2_Mm LTR ERVK 1 475 0 2 609 1394 164 93 77 chr3 3177699 3177974 -156421809 - ORR1A4 LTR MaLR -48 281 1 2 609 3957 171 64 24 chr3 3178438 3178490 -156421293 - RMER17B LTR ERVK -11 947 853 2 609 3554 48 0 0 chr3 3178490 3178886 -156420897 - MTA_Mm LTR MaLR 0 396 1 2 609 3957 178 70 37 chr3 3178886 3179756 -156420027 - RMER17B LTR ERVK -58 900 1 2 609 342 301 11 0 chr3 3180100 3180193 -156419590 + RMER15 LTR ERVL 396 489 -86 2 609 339 25 0 0 chr3 3181217 3181257 -156418526 + (A)n Simple_repeat Simple_repeat 1 40 0 2 609 30698 91 5 14 chr3 3181267 3186535 -156413248 + L1Md_F2 LINE L1 368 5586 -297 2 609 8279 66 2 0 chr3 3186535 3187520 -156412263 + L1Md_F2 LINE L1 5587 6573 -9 2 609 22 35 0 0 chr3 3188311 3188340 -156411443 + AT_rich Low_complexity Low_complexity 1 29 0 2 609 1094 157 56 43 chr3 3188505 3188738 -156411045 + ORR1A4 LTR MaLR 5 240 -89 2 609 450 265 31 54 chr3 3188860 3189047 -156410736 + RLTR43A LTR ERVK 201 364 0 2 609 360 0 0 0 chr3 3189420 3189460 -156410323 + (TAAAA)n Simple_repeat Simple_repeat 1 40 0 2 609 2013 184 151 34 chr3 3189721 3190226 -156409557 + ETnERV2-int LTR ERVK 256 819 -4587 2 609 2554 210 39 27 chr3 3190234 3190400 -156409383 + ETnERV2-int LTR ERVK 1727 1891 -5515 2 609 959 125 0 0 chr3 3190400 3190536 -156409247 - B1_Mus1 SINE Alu -12 136 1 2 609 2554 210 39 27 chr3 3190536 3190967 -156408816 + ETnERV2-int LTR ERVK 1892 2331 -5075 2 609 800 175 0 7 chr3 3191027 3191171 -156408612 - B1_Mm SINE Alu -3 144 2 2 609 3716 194 25 66 chr3 3191172 3192011 -156407772 + ETnERV2-int LTR ERVK 1890 2694 -4712 2 609 4515 110 3 17 chr3 3192045 3192681 -156407102 + L1Md_F2 LINE L1 5955 6581 -1 2 609 331 220 0 0 chr3 3192681 3192740 -156407043 + RMER16-int LTR ERVK 1575 1633 -3773 2 609 2590 214 12 22 chr3 3192738 3193331 -156406452 + RMER16-int LTR ERVK 2253 2839 -2567 2 609 2223 254 28 16 chr3 3193356 3194064 -156405719 + RMER16-int LTR ERVK 4083 4533 -2873 2 609 953 248 0 18 chr3 3194118 3194336 -156405447 + RMER16-int LTR ERVK 5121 5334 -2072 2 609 680 180 37 80 chr3 3194333 3194474 -156405309 + RLTR45-int LTR ERVK 3267 3407 -3837 2 609 1370 93 33 0 chr3 3194474 3194657 -156405126 + B2_Mm1a SINE B2 1 189 -4 2 609 680 180 37 80 chr3 3194657 3194678 -156405105 + RLTR45-int LTR ERVK 3408 3422 -3822 2 609 2036 248 34 13 chr3 3194684 3195252 -156404531 + ETnERV2-int LTR ERVK 4086 4533 -2873 2 609 1735 228 6 11 chr3 3195307 3195671 -156404112 + ETnERV2-int LTR ERVK 5121 5482 -1924 2 609 512 106 0 45 chr3 3195778 3195867 -156403916 + ORR1A1 LTR MaLR 143 227 -119 2 609 477 181 6 50 chr3 3195972 3196152 -156403631 + CT-rich Low_complexity Low_complexity 3 174 0 2 609 223 175 17 17 chr3 3196173 3196231 -156403552 + CT-rich Low_complexity Low_complexity 2 59 0 2 609 473 199 11 28 chr3 3196276 3196457 -156403326 + CT-rich Low_complexity Low_complexity 1 178 0 2 609 282 239 18 25 chr3 3196483 3196646 -156403137 + CT-rich Low_complexity Low_complexity 1 162 0 2 609 308 347 72 13 chr3 3196646 3196798 -156402985 - HAL1-3A_ME LINE L1 -414 2444 2284 2 609 246 175 9 55 chr3 3196810 3196919 -156402864 + CT-rich Low_complexity Low_complexity 3 106 0 2 609 526 177 22 33 chr3 3196932 3197113 -156402670 + CT-rich Low_complexity Low_complexity 1 179 0 2 609 339 285 126 22 chr3 3197156 3197411 -156402372 - HAL1-3A_ME LINE L1 -414 2444 2281 2 609 343 281 64 64 chr3 3197417 3197573 -156402210 - HAL1-3A_ME LINE L1 -419 2439 2284 2 609 480 196 19 25 chr3 3197574 3197736 -156402047 + CT-rich Low_complexity Low_complexity 2 162 0 2 609 371 286 60 20 chr3 3197736 3197886 -156401897 - HAL1-3A_ME LINE L1 -419 2439 2284 2 609 574 178 34 34 chr3 3197897 3198233 -156401550 + CT-rich Low_complexity Low_complexity 1 336 0 2 609 594 233 0 26 chr3 3198263 3198536 -156401247 + CT-rich Low_complexity Low_complexity 1 265 0 2 609 536 163 0 0 chr3 3198536 3198622 -156401161 - B1_Mus2 SINE Alu -6 141 56 2 609 584 96 0 0 chr3 3198980 3199053 -156400730 + tRNA-Lys-AAG tRNA tRNA 4 76 0 2 609 474 176 0 0 chr3 3199386 3199460 -156400323 + tRNA-Pro-CCY tRNA tRNA 1 74 -1 2 609 2588 71 0 0 chr3 3199594 3199932 -156399851 + ORR1A0 LTR MaLR 1 338 -8 2 609 183 42 0 0 chr3 3199953 3199977 -156399806 + (TTG)n Simple_repeat Simple_repeat 1 24 0 2 609 400 283 197 21 chr3 3199993 3200181 -156399602 - ID_B1 SINE B4 -2 222 2 2 609 997 229 110 130 chr3 3200253 3200654 -156399129 + RLTR9C LTR ERVK 1 393 0 2 609 333 0 0 0 chr3 3202003 3202040 -156397743 + (TTTA)n Simple_repeat Simple_repeat 4 40 0 2 609 1436 233 92 6 chr3 3202451 3202800 -156396983 + RLTR30 LTR ERV1 1 379 0 2 609 15661 179 16 35 chr3 3202857 3205262 -156394521 - L1VL4 LINE L1 -1465 4421 2001 2 609 189 0 0 0 chr3 3205262 3205283 -156394500 + (TTTG)n Simple_repeat Simple_repeat 4 24 0 2 609 15661 179 16 35 chr3 3205283 3205487 -156394296 - L1VL4 LINE L1 -3886 2000 1812 2 609 1986 59 0 8 chr3 3205487 3205727 -156394056 - L1Md_F3 LINE L1 -2 6582 6345 2 609 15661 185 43 36 chr3 3205727 3206885 -156392898 - L1VL4 LINE L1 -4075 1811 687 2 609 584 246 16 0 chr3 3207186 3207308 -156392475 + B1_Mur1 SINE Alu 26 149 0 2 609 1029 254 29 4 chr3 3207522 3207767 -156392016 + MTD LTR MaLR 1 251 -168 2 609 285 232 0 0 chr3 3207803 3207859 -156391924 - B1F1 SINE Alu -5 144 89 2 609 226 154 0 0 chr3 3207858 3207897 -156391886 + MTD LTR MaLR 381 419 0 2 609 1644 198 255 7 chr3 3208591 3208791 -156390992 - MT2B LTR ERVL -44 557 342 2 609 234 0 0 0 chr3 3208791 3208817 -156390966 + (TGAA)n Simple_repeat Simple_repeat 2 27 0 2 609 1644 198 255 7 chr3 3208817 3209048 -156390735 - MT2B LTR ERVL -260 341 20 2 609 509 305 0 15 chr3 3209055 3209188 -156390595 - B1_Mur4 SINE Alu -15 135 5 2 609 308 273 28 142 chr3 3209171 3209232 -156390551 - MTE2b LTR MaLR -183 196 135 2 609 840 145 69 0 chr3 3209232 3209363 -156390420 + B1_Mus2 SINE Alu 1 140 -7 2 609 459 0 0 0 chr3 3209365 3209416 -156390367 + (CAAAA)n Simple_repeat Simple_repeat 3 53 0 2 609 308 273 28 142 chr3 3209416 3209492 -156390291 - MTE2b LTR MaLR -245 134 72 2 609 1690 166 40 31 chr3 3210067 3210391 -156389392 + ORR1A4 LTR MaLR 3 329 0 2 609 485 274 43 25 chr3 3210674 3210835 -156388948 + RLTR43A LTR ERVK 201 364 0 2 609 388 105 26 0 chr3 3211207 3211283 -156388500 + (TAAAA)n Simple_repeat Simple_repeat 1 78 0 2 609 2136 186 134 35 chr3 3211519 3212033 -156387750 + RMER16-int LTR ERVK 255 819 -4587 2 609 975 173 23 0 chr3 3212039 3212212 -156387571 + RMER16-int LTR ERVK 939 1115 -5022 2 609 1150 243 109 0 chr3 3212219 3212532 -156387251 + RLTR30 LTR ERV1 33 379 0 2 609 206 293 27 0 chr3 3212603 3212678 -156387105 + CT-rich Low_complexity Low_complexity 3 79 0 2 609 203 255 0 18 chr3 3212934 3212990 -156386793 + CT-rich Low_complexity Low_complexity 1 55 0 2 609 17298 173 36 35 chr3 3213054 3216713 -156383070 - Lx2B LINE L1 -10 6990 3334 2 609 234 0 0 0 chr3 3216713 3216739 -156383044 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 2 609 17298 168 10 39 chr3 3216739 3217116 -156382667 - Lx2B LINE L1 -2545 3341 2999 2 609 1405 97 43 0 chr3 3217116 3217302 -156382481 - B2_Mm2 SINE B2 -1 194 1 2 609 17298 183 60 38 chr3 3217302 3217994 -156381789 - Lx2B LINE L1 -2878 3002 1810 2 609 2623 120 31 10 chr3 3217994 3218382 -156381401 - MTA_Mm LTR MaLR 0 396 1 2 609 15168 173 167 22 chr3 3218382 3219691 -156380092 - Lx2B LINE L1 -4071 1809 356 2 609 310 265 33 206 chr3 3220746 3220960 -156378823 - RMER15 LTR ERVL -54 521 345 2 609 4490 176 63 57 chr3 3221186 3222138 -156377645 + RMER17B LTR ERVK 1 958 0 2 609 234 324 0 14 chr3 3222462 3222534 -156377249 + MTE2a LTR MaLR 1 71 -308 2 609 1605 149 103 72 chr3 3222604 3222923 -156376860 + ORR1A4 LTR MaLR 1 329 0 2 609 1798 179 16 68 chr3 3223065 3223430 -156376353 - ORR1B1 LTR MaLR -8 386 41 2 609 609 124 0 0 chr3 3223473 3223570 -156376213 + (GAAA)n Simple_repeat Simple_repeat 1 97 0 2 609 816 11 0 0 chr3 3223570 3223663 -156376120 + (GAAAA)n Simple_repeat Simple_repeat 3 95 0 2 609 189 121 0 0 chr3 3223848 3223881 -156375902 + (CAGA)n Simple_repeat Simple_repeat 2 34 0 2 609 429 70 0 0 chr3 3224052 3224109 -156375674 + (CA)n Simple_repeat Simple_repeat 2 58 0 2 609 897 235 82 49 chr3 3224131 3224656 -156375127 - RLTR21 LTR ERVK -261 1311 737 2 609 618 280 86 34 chr3 3224666 3224899 -156374884 - Lx2B LINE L1 0 7000 6756 2 609 1171 243 12 12 chr3 3224899 3225157 -156374626 - RLTR21 LTR ERVK -1314 258 1 2 609 22727 182 30 6 chr3 3225222 3227673 -156372110 - Lx2 LINE L1 -997 6000 3480 2 609 270 0 0 0 chr3 3227673 3227703 -156372080 + (TTG)n Simple_repeat Simple_repeat 1 30 0 2 609 22727 193 37 14 chr3 3227703 3230530 -156369253 - Lx2 LINE L1 -2407 3479 428 2 609 518 240 25 0 chr3 3230756 3230877 -156368906 + B1_Mur1 SINE Alu 26 149 0 2 609 1209 222 33 4 chr3 3231101 3231345 -156368438 + MTD LTR MaLR 1 251 -168 2 609 308 217 0 0 chr3 3231383 3231443 -156368340 - B1F1 SINE Alu 0 149 90 2 609 1599 170 6 40 chr3 3232172 3232292 -156367491 - MT2B LTR ERVL -44 557 449 2 609 2988 39 0 6 chr3 3232292 3232631 -156367152 + IAPLTR1a_Mm LTR ERVK 1 337 0 2 609 1599 212 39 69 chr3 3232631 3232931 -156366852 - MT2B LTR ERVL -153 448 25 2 609 525 279 0 8 chr3 3232942 3233065 -156366718 - B1_Mur3 SINE Alu -15 134 13 2 609 297 298 29 110 chr3 3233057 3233118 -156366665 - MTE2b LTR MaLR -183 196 135 2 609 920 130 65 7 chr3 3233118 3233245 -156366538 + B1_Mus2 SINE Alu 1 136 -11 2 609 408 40 0 0 chr3 3233245 3233295 -156366488 + (GAAA)n Simple_repeat Simple_repeat 3 52 0 2 609 920 130 65 7 chr3 3233295 3233306 -156366477 + B1_Mus2 SINE Alu 137 147 0 2 609 297 298 29 110 chr3 3233306 3233380 -156366403 - MTE2b LTR MaLR -245 134 72 2 609 1627 190 34 25 chr3 3233963 3234287 -156365496 + ORR1A4 LTR MaLR 3 329 0 2 609 236 245 109 69 chr3 3234359 3234460 -156365323 + MER90a LTR ERV1 40 144 -470 2 609 412 242 25 80 chr3 3234580 3234742 -156365041 + RLTR43A LTR ERVK 212 364 0 2 609 236 91 23 0 chr3 3235114 3235158 -156364625 + (TAAAA)n Simple_repeat Simple_repeat 1 45 0 2 609 32772 90 15 5 chr3 3235159 3240494 -156359289 + L1Md_F3 LINE L1 206 5584 -299 2 609 8139 52 26 4 chr3 3240496 3241471 -156358312 + L1Md_F3 LINE L1 5587 6582 -2 2 609 1964 167 184 44 chr3 3241719 3242214 -156357569 + RMER16-int LTR ERVK 256 819 -4587 2 609 713 226 12 6 chr3 3242220 3242380 -156357403 + RMER16-int LTR ERVK 1090 1250 -4156 2 609 12365 100 9 6 chr3 3242388 3244782 -156355001 - L1Md_F2 LINE L1 -12 6570 4169 2 609 180 0 0 0 chr3 3244815 3244835 -156354948 + (TA)n Simple_repeat Simple_repeat 2 21 0 2 609 282 29 0 0 chr3 3244949 3244984 -156354799 + (CAGA)n Simple_repeat Simple_repeat 2 36 0 2 609 1255 262 7 23 chr3 3245313 3245621 -156354162 - MTD LTR MaLR -103 316 14 2 609 1614 217 41 16 chr3 3245721 3246086 -156353697 - Lx4B LINE L1 -212 6846 6473 2 609 627 280 72 0 chr3 3246091 3246284 -156353499 + Lx5 LINE L1 6796 7002 -48 2 609 354 45 0 0 chr3 3246300 3246344 -156353439 + (TAAA)n Simple_repeat Simple_repeat 2 45 0 2 609 2994 54 0 0 chr3 3246689 3247021 -156352762 + IAPEY3_LTR LTR ERVK 1 332 0 2 609 284 209 12 0 chr3 3247024 3247110 -156352673 + GA-rich Low_complexity Low_complexity 3 89 0 3 609 640 119 8 8 chr3 3247160 3247279 -156352504 + (GA)n Simple_repeat Simple_repeat 2 120 0 3 609 238 256 110 29 chr3 3247778 3247951 -156351832 + RMER17D LTR ERVK 348 534 -355 3 609 1287 159 121 0 chr3 3247946 3248178 -156351605 - MTC LTR MaLR -161 260 1 3 609 434 298 120 16 chr3 3248275 3248517 -156351266 - Lx8 LINE L1 -944 6529 6263 3 609 8056 108 22 20 chr3 3248800 3248885 -156350898 + Lx3_Mus LINE L1 5819 5906 -1103 3 609 273 57 0 0 chr3 3248885 3248920 -156350863 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 3 609 8056 108 22 20 chr3 3248920 3250015 -156349768 + Lx3_Mus LINE L1 5907 7001 -8 3 609 36197 19 2 7 chr3 3250015 3255161 -156344622 + L1Md_A LINE L1 235 5348 -535 3 609 1834 140 256 31 chr3 3255161 3255611 -156344172 - RLTR6_Mm LTR ERV1 -67 587 37 3 609 65618 36 12 0 chr3 3255724 3263407 -156336376 - RLTR6-int LTR ERV1 0 7778 1 3 609 1860 148 247 30 chr3 3263408 3263874 -156335909 - RLTR6_Mm LTR ERV1 -51 603 37 3 609 2141 21 0 0 chr3 3263987 3264226 -156335557 + L1Md_A LINE L1 5348 5586 -297 3 609 9188 19 0 0 chr3 3264226 3265210 -156334573 + L1Md_A LINE L1 5587 6570 -12 3 609 24 0 0 0 chr3 3265231 3265255 -156334528 + AT_rich Low_complexity Low_complexity 1 24 0 3 609 321 47 0 0 chr3 3265674 3265717 -156334066 + (CAGA)n Simple_repeat Simple_repeat 2 44 0 3 609 301 305 67 6 chr3 3267070 3267235 -156332548 - L1_Mur3 LINE L1 -426 5454 5280 3 609 300 427 0 0 chr3 3267284 3267401 -156332382 - RSINE1 SINE B4 -17 148 32 3 609 400 272 43 33 chr3 3267433 3267618 -156332165 - L1M2 LINE L1 -845 5298 5040 3 609 225 0 0 0 chr3 3268183 3268208 -156331575 + (TG)n Simple_repeat Simple_repeat 2 26 0 3 609 545 188 129 1 chr3 3268576 3268702 -156331081 + RLTR20D LTR ERVK 1 167 -401 3 609 396 0 0 0 chr3 3268722 3268766 -156331017 + (TG)n Simple_repeat Simple_repeat 2 45 0 3 609 365 326 0 0 chr3 3268769 3268861 -156330922 + RLTR16 LTR ERVK 414 505 0 3 609 13848 91 30 5 chr3 3268901 3271562 -156328221 - L1Md_F2 LINE L1 -9 6573 3832 3 609 7373 174 37 11 chr3 3271559 3273130 -156326653 + Lx4A LINE L1 5434 7058 0 3 609 12744 178 38 15 chr3 3273176 3275500 -156324283 + Lx5 LINE L1 1628 5095 -782 3 609 2869 110 27 5 chr3 3275500 3275910 -156323873 - BGLII LTR ERVK -2 419 1 3 609 12744 162 55 16 chr3 3275910 3276777 -156323006 + Lx5 LINE L1 5096 6003 -1047 3 610 384 307 128 18 chr3 3276833 3277115 -156322668 - L1MC3 LINE L1 -464 7321 7009 3 610 6625 100 23 2 chr3 3277237 3278137 -156321646 + Lx3_Mus LINE L1 6091 7009 0 3 610 1167 251 79 30 chr3 3278153 3278622 -156321161 + L1_Mur3 LINE L1 1795 2286 -3594 3 610 321 0 0 0 chr3 3278628 3278666 -156321117 - MERVL-int LTR ERVL 0 5485 5448 3 610 314 139 26 53 chr3 3278666 3278742 -156321041 - ORR1A3-int LTR MaLR -1323 640 567 3 610 2891 43 0 20 chr3 3278742 3279062 -156320721 - MERVL-int LTR ERVL -114 5371 5058 3 610 6109 76 32 21 chr3 3279062 3279908 -156319875 + RLTR13A LTR ERVK 1 855 0 3 610 2891 43 0 20 chr3 3279908 3279944 -156319839 - MERVL-int LTR ERVL -428 5057 5022 3 610 6486 55 15 0 chr3 3279939 3280722 -156319061 - MERVL-int LTR ERVL -611 4874 4080 3 610 16830 35 20 1 chr3 3280724 3282677 -156317106 - MERVL-int LTR ERVL -2446 3039 1050 3 610 9009 12 0 0 chr3 3282677 3283745 -156316038 - L1Md_A LINE L1 0 6582 5515 3 610 5452 11 0 0 chr3 3283744 3284356 -156315427 + L1Md_A LINE L1 4892 5503 -380 3 610 8706 48 9 1 chr3 3284356 3285406 -156314377 - MERVL-int LTR ERVL -4427 1058 1 3 610 3459 57 72 21 chr3 3285406 3285875 -156313908 - MT2_Mm LTR ERVL 0 493 1 3 610 4720 194 52 21 chr3 3285875 3287067 -156312716 + L1_Mur3 LINE L1 2282 3510 -2370 3 610 1328 136 66 0 chr3 3287067 3287310 -156312473 - ORR1A4 LTR MaLR -68 261 3 3 610 1404 223 57 8 chr3 3287311 3287664 -156312119 + L1_Mur3 LINE L1 4200 4569 -1311 3 610 2377 284 99 24 chr3 3287657 3288714 -156311069 + Lx6 LINE L1 6003 7388 -72 3 610 1793 208 28 16 chr3 3288793 3289218 -156310565 + L1_Mur3 LINE L1 4563 4992 -888 3 610 3573 81 62 14 chr3 3289338 3289854 -156309929 - L1_Mus2 LINE L1 0 6566 6026 3 610 774 240 62 109 chr3 3290652 3290909 -156308874 + RMER1C Other Other 37 281 -1061 3 610 543 271 13 42 chr3 3291194 3291393 -156308390 + RMER1B Other Other 241 351 -715 3 610 1965 205 50 35 chr3 3292222 3292568 -156307215 + RMER1C Other Other 853 1210 -132 3 610 753 67 0 0 chr3 3292568 3292672 -156307111 + (TCC)n Simple_repeat Simple_repeat 2 105 0 3 610 1965 205 50 35 chr3 3292672 3292806 -156306977 + RMER1C Other Other 1211 1340 -2 3 610 441 226 67 167 chr3 3292816 3293055 -156306728 + L1_Mur3 LINE L1 4977 5191 -689 3 610 438 304 92 16 chr3 3293056 3293311 -156306472 + L1VL1 LINE L1 66 418 -6000 3 610 402 297 22 7 chr3 3293346 3293485 -156306298 + L1Md_F LINE L1 675 815 -5801 3 610 899 180 22 0 chr3 3293482 3293660 -156306123 + L1Md_F LINE L1 725 906 -5710 3 610 4370 123 19 83 chr3 3293659 3294200 -156305583 + MusHAL1 LINE L1 1238 1783 -929 3 610 330 26 0 0 chr3 3294200 3294239 -156305544 + (TA)n Simple_repeat Simple_repeat 1 39 0 3 610 4370 123 19 83 chr3 3294239 3294540 -156305243 + MusHAL1 LINE L1 1784 2026 -686 3 610 622 122 83 50 chr3 3294539 3294610 -156305173 + L1Md_F LINE L1 4531 4596 -1287 3 610 3617 101 81 38 chr3 3294610 3295188 -156304595 - RLTR1D LTR ERV1 0 605 3 3 610 622 122 83 50 chr3 3295188 3295237 -156304546 + L1Md_F LINE L1 4597 4655 -1228 3 610 609 267 66 6 chr3 3295242 3295423 -156304360 + ID_B1 SINE B4 33 224 0 3 610 233 349 12 0 chr3 3295588 3295674 -156304109 - MIR3 SINE MIR -22 186 100 3 610 254 214 28 14 chr3 3296901 3296972 -156302811 + ID4 SINE ID 1 72 -11 3 610 242 296 23 0 chr3 3297303 3297391 -156302392 + MER96B DNA hAT 146 235 -182 3 610 221 296 9 18 chr3 3298124 3298234 -156301549 + (CGGGG)n Simple_repeat Simple_repeat 4 112 0 3 610 265 270 27 0 chr3 3298568 3298642 -156301141 - Charlie1b DNA MER1_type 0 523 448 3 610 386 264 11 0 chr3 3298759 3298850 -156300933 + ID_B1 SINE B4 108 199 -25 3 610 228 35 0 0 chr3 3299667 3299696 -156300087 + (CA)n Simple_repeat Simple_repeat 1 29 0 3 610 822 276 139 10 chr3 3299696 3300099 -156299684 - L1MC3 LINE L1 -1177 6608 6154 3 610 387 127 0 0 chr3 3300118 3300181 -156299602 + (TG)n Simple_repeat Simple_repeat 1 63 0 3 610 351 349 46 8 chr3 3300195 3300325 -156299458 - RSINE1 SINE B4 -20 145 11 3 610 812 278 9 0 chr3 3300330 3300557 -156299226 - L1MC3 LINE L1 -1852 5933 5705 3 610 525 165 35 0 chr3 3300695 3300810 -156298973 + ORR1D1 LTR MaLR 1 119 -255 3 610 1080 299 64 6 chr3 3301120 3301450 -156298333 + MER21B LTR ERV1 280 628 -235 3 610 369 151 0 0 chr3 3301457 3301543 -156298240 + T-rich Low_complexity Low_complexity 1 86 0 3 610 902 67 84 56 chr3 3301543 3301686 -156298097 - B1_Mm SINE Alu 0 147 1 3 610 282 220 81 41 chr3 3301695 3301818 -156297965 + MER21B LTR ERV1 625 752 -111 3 610 329 286 68 7 chr3 3301857 3302005 -156297778 - L1MC3 LINE L1 -838 5308 5152 3 610 642 240 19 7 chr3 3302263 3302418 -156297365 - L1MC3 LINE L1 -1457 4689 4533 3 610 219 292 13 40 chr3 3302418 3302493 -156297290 + ID4 SINE ID 2 74 -9 3 610 950 198 37 0 chr3 3302430 3302617 -156297166 + B3 SINE B2 13 206 -10 3 610 1094 121 0 0 chr3 3302645 3302794 -156296989 + B1_Mur4 SINE Alu 2 150 0 3 610 504 285 80 5 chr3 3303358 3303545 -156296238 + ID_B1 SINE B4 8 208 -16 3 610 198 0 0 0 chr3 3303719 3303741 -156296042 + (ATG)n Simple_repeat Simple_repeat 2 23 0 3 610 840 174 0 0 chr3 3303743 3303881 -156295902 + B1_Mus2 SINE Alu 3 140 -7 3 610 456 135 0 0 chr3 3303913 3303987 -156295796 + (ATG)n Simple_repeat Simple_repeat 2 75 0 3 610 1184 68 0 0 chr3 3304283 3304430 -156295353 + B1_Mus2 SINE Alu 1 147 0 3 610 207 0 0 0 chr3 3304688 3304711 -156295072 + (CA)n Simple_repeat Simple_repeat 1 23 0 3 610 730 143 44 15 chr3 3304802 3304937 -156294846 + B1_Mur4 SINE Alu 12 150 0 3 610 642 193 17 0 chr3 3304972 3305091 -156294692 + B3 SINE B2 1 121 -95 3 610 439 278 68 6 chr3 3305198 3305361 -156294422 - L1MB5 LINE L1 -311 5863 5691 3 610 1374 91 11 0 chr3 3305429 3305450 -156294333 - B2_Mm2 SINE B2 -7 188 168 3 610 1101 103 0 0 chr3 3305450 3305595 -156294188 + B1_Mus2 SINE Alu 1 145 -2 3 610 1374 91 11 0 chr3 3305595 3305759 -156294024 - B2_Mm2 SINE B2 -28 167 2 3 610 1450 147 96 28 chr3 3305768 3305827 -156293956 - RMER6C LTR ERVK -8 682 627 3 610 3083 184 22 53 chr3 3305827 3306451 -156293332 + RLTR1D LTR ERV1 1 605 0 3 610 1450 147 96 28 chr3 3306451 3306754 -156293029 - RMER6C LTR ERVK -64 626 295 3 610 194 191 21 0 chr3 3306757 3306804 -156292979 + CT-rich Low_complexity Low_complexity 2 49 0 3 610 413 288 61 78 chr3 3306875 3307105 -156292678 - RMER2 LTR ERV1 -16 551 326 3 610 1423 153 30 19 chr3 3307328 3307595 -156292188 - RMER6C LTR ERVK -417 273 4 3 610 733 264 25 5 chr3 3307596 3307798 -156291985 - ID_B1 SINE B4 -16 208 3 3 610 343 324 37 32 chr3 3307801 3308018 -156291765 - L1MB5 LINE L1 -520 5664 5447 3 610 25 0 0 0 chr3 3308344 3308369 -156291414 + AT_rich Low_complexity Low_complexity 1 25 0 3 610 324 83 0 0 chr3 3308383 3308431 -156291352 + (TTTA)n Simple_repeat Simple_repeat 3 50 0 3 610 276 40 39 20 chr3 3308548 3308599 -156291184 + (TTTTTG)n Simple_repeat Simple_repeat 3 54 0 3 610 909 109 14 0 chr3 3308728 3308866 -156290917 - B1_Mus1 SINE Alu -8 140 1 3 610 257 0 0 29 chr3 3309510 3309544 -156290239 + (TTTTTG)n Simple_repeat Simple_repeat 3 35 0 3 610 225 0 0 0 chr3 3310803 3310828 -156288955 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 3 610 281 141 97 14 chr3 3311211 3311283 -156288500 + L1_Mur3 LINE L1 2812 2889 -2991 3 610 252 242 0 57 chr3 3311298 3311403 -156288380 + L1_Mur3 LINE L1 3062 3160 -2720 3 610 233 282 0 0 chr3 3311475 3311553 -156288230 + A-rich Low_complexity Low_complexity 1 78 0 3 610 234 344 105 50 chr3 3311626 3311865 -156287918 + Lx8 LINE L1 6704 6955 -518 3 610 1679 161 39 101 chr3 3312678 3313092 -156286691 - RMER10B LTR ERVL -10 388 1 3 610 554 232 12 3 chr3 3313464 3313598 -156286185 + RMER17C LTR ERVK 1 121 -289 3 610 42027 6 0 1 chr3 3313598 3319952 -156279831 - L1Md_A LINE L1 -21 6561 214 3 610 619 204 102 157 chr3 3319952 3320062 -156279721 + RMER17C LTR ERVK 85 221 -189 3 610 186 43 0 0 chr3 3320062 3320085 -156279698 + (CCCCCA)n Simple_repeat Simple_repeat 3 25 0 3 610 619 204 102 157 chr3 3320085 3320317 -156279466 + RMER17C LTR ERVK 222 408 -2 3 610 7675 215 43 29 chr3 3321383 3321863 -156277920 + L1_Mur3 LINE L1 2996 3477 -2403 3 610 1316 100 39 0 chr3 3321863 3322043 -156277740 + B2_Mm2 SINE B2 2 188 -7 3 610 7675 234 41 40 chr3 3322043 3324353 -156275430 + L1_Mur3 LINE L1 3478 5689 -197 3 610 222 229 16 16 chr3 3325086 3325148 -156274635 + (TG)n Simple_repeat Simple_repeat 1 62 0 3 610 2886 16 0 0 chr3 3326677 3326999 -156272784 + RLTRETN_Mm LTR ERVK 1 322 0 3 610 43432 15 0 3 chr3 3326999 3331856 -156267927 + MMETn-int LTR ERVK 1 4844 0 3 610 2890 16 0 0 chr3 3331856 3332178 -156267605 + RLTRETN_Mm LTR ERVK 1 322 0 3 610 226 274 21 59 chr3 3332468 3332654 -156267129 + (TG)n Simple_repeat Simple_repeat 1 179 0 3 610 338 303 31 49 chr3 3332733 3332896 -156266887 - RNLTR23 LTR ERVK 0 642 483 3 610 2954 269 64 14 chr3 3333627 3333835 -156265948 - RNERVK23-int LTR ERVK -402 7815 7585 3 610 905 55 8 0 chr3 3333835 3333963 -156265820 + (TC)n Simple_repeat Simple_repeat 2 130 0 3 610 2954 269 64 14 chr3 3333963 3334603 -156265180 - RNERVK23-int LTR ERVK -633 7584 6941 3 610 231 36 0 0 chr3 3334603 3334631 -156265152 + (GA)n Simple_repeat Simple_repeat 1 28 0 3 610 2954 269 64 14 chr3 3334631 3334813 -156264970 - RNERVK23-int LTR ERVK -1277 6940 6734 3 610 13864 252 20 14 chr3 3335157 3335371 -156264412 - RNERVK23-int LTR ERVK -1880 6337 6111 3 610 243 0 0 0 chr3 3335371 3335398 -156264385 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3 610 13864 252 20 14 chr3 3335398 3338951 -156260832 - RNERVK23-int LTR ERVK -2107 6110 2547 3 610 3070 69 177 2 chr3 3338951 3339387 -156260396 + RLTR1B LTR ERV1 1 512 0 3 610 13864 252 20 14 chr3 3339387 3339413 -156260370 - RNERVK23-int LTR ERVK -5671 2546 2520 3 610 57016 61 8 9 chr3 3339413 3346953 -156252830 + MMERGLN-int LTR ERV1 1 7556 0 3 610 2843 87 170 25 chr3 3346953 3347400 -156252383 + RLTR1B LTR ERV1 1 512 0 4 610 2075 290 53 33 chr3 3347420 3348400 -156251383 - RNERVK23-int LTR ERVK -5687 2530 1531 3 610 1451 196 51 97 chr3 3349514 3349926 -156249857 - RLTR9C LTR ERVK 0 393 1 4 610 6198 111 37 4 chr3 3350271 3351328 -156248455 - MusHAL1 LINE L1 -281 2431 1340 4 610 1444 87 0 0 chr3 3351340 3351548 -156248235 + L1_Mus2 LINE L1 5589 5796 -770 4 610 1130 114 24 9 chr3 3351548 3351760 -156248023 + L1_Mus3 LINE L1 6419 6633 -5 4 610 1321 91 4 76 chr3 3351764 3352001 -156247782 + L1_Mus2 LINE L1 5787 6006 -632 4 610 2368 152 32 32 chr3 3352000 3352463 -156247320 + Lx LINE L1 6172 6634 -20 4 610 900 315 51 8 chr3 3352483 3352873 -156246910 + RodERV21-int LTR ERV1 4383 4789 -202 4 610 495 0 0 0 chr3 3353223 3353278 -156246505 + (TC)n Simple_repeat Simple_repeat 2 56 0 4 610 342 0 0 0 chr3 3353279 3353317 -156246466 + (CA)n Simple_repeat Simple_repeat 2 39 0 4 610 732 12 0 0 chr3 3353610 3353695 -156246088 + (TG)n Simple_repeat Simple_repeat 2 86 0 4 610 670 269 131 95 chr3 3353718 3354106 -156245677 - MT2A LTR ERVL -64 537 1 4 610 2848 147 12 0 chr3 3354187 3354678 -156245105 - L1_Mus4 LINE L1 -3 5880 5384 4 610 4279 132 24 1 chr3 3354678 3355356 -156244427 + L1_Mus4 LINE L1 5938 6630 -6 4 610 318 376 79 62 chr3 3355374 3355601 -156244182 + B4A SINE B4 6 236 -56 4 610 1548 265 41 57 chr3 3357180 3357672 -156242111 + RMER19C LTR ERVK 126 609 -2 4 610 1563 231 41 9 chr3 3357774 3358115 -156241668 - ORR1B1 LTR MaLR -2 392 41 4 610 1350 257 107 23 chr3 3358122 3358789 -156240994 + Lx9 LINE L1 5163 5916 -1728 4 610 1587 281 22 54 chr3 3359030 3359661 -156240122 + Lx9 LINE L1 6582 7192 -452 4 610 1915 178 8 70 chr3 3359670 3359787 -156239996 - RLTR25A LTR ERVK -757 346 230 4 610 5290 98 4 11 chr3 3359787 3360549 -156239234 + L1Md_F2 LINE L1 5812 6568 -14 4 610 1915 178 8 70 chr3 3360549 3360800 -156238983 - RLTR25A LTR ERVK -874 229 1 4 610 525 126 11 0 chr3 3361213 3361308 -156238475 - L1_Mus4 LINE L1 -11 6625 6530 4 610 757 253 21 0 chr3 3361883 3362077 -156237706 - Lx9 LINE L1 -734 6910 6713 4 610 940 268 39 14 chr3 3362095 3362379 -156237404 - Lx9 LINE L1 -1011 6633 6343 4 610 4258 103 24 8 chr3 3362865 3363925 -156235858 + L1VL2 LINE L1 331 1414 -2201 4 610 2413 97 97 3 chr3 3363925 3364306 -156235477 - RLTR9B2 LTR ERVK -3 417 1 4 610 334 113 40 40 chr3 3364307 3364381 -156235402 - ETnERV2-int LTR ERVK -2 7404 7331 4 610 30300 112 16 9 chr3 3364438 3370669 -156229114 - L1Md_F2 LINE L1 -1 6581 307 4 610 814 234 22 28 chr3 3370835 3371218 -156228565 - ETnERV2-int LTR ERVK -981 6425 6096 4 610 4575 186 66 35 chr3 3371223 3372354 -156227429 - RMER16-int LTR ERVK -1230 4176 3010 4 610 4305 113 11 30 chr3 3372356 3373120 -156226663 + MusHAL1 LINE L1 713 1461 -1251 4 610 259 433 73 0 chr3 3373185 3373335 -156226448 + RSINE1 SINE B4 3 163 -2 4 610 25 31 0 0 chr3 3373354 3373386 -156226397 + AT_rich Low_complexity Low_complexity 1 32 0 4 610 25 31 0 0 chr3 3375523 3375555 -156224228 + AT_rich Low_complexity Low_complexity 1 32 0 4 610 230 388 7 43 chr3 3376167 3376307 -156223476 + MIRc SINE MIR 75 209 -59 4 610 317 336 88 22 chr3 3376480 3376617 -156223166 - MIR SINE MIR -97 165 20 4 610 522 138 0 0 chr3 3377337 3377446 -156222337 + (TG)n Simple_repeat Simple_repeat 2 110 0 4 610 477 0 0 0 chr3 3377446 3377499 -156222284 + (GA)n Simple_repeat Simple_repeat 1 53 0 4 610 228 354 27 10 chr3 3377567 3377702 -156222081 - MIR SINE MIR -56 212 70 4 610 403 261 185 0 chr3 3377786 3377905 -156221878 - B1_Mur3 SINE Alu -6 143 3 4 610 1820 103 41 28 chr3 3378138 3378456 -156221327 - RLTRETN_Mm LTR ERVK 0 322 1 4 610 550 336 84 19 chr3 3379842 3380057 -156219726 + B4 SINE B4 1 229 -63 4 610 653 341 57 9 chr3 3380087 3380315 -156219468 + B4A SINE B4 54 292 0 4 610 318 106 0 0 chr3 3380374 3380421 -156219362 + (GA)n Simple_repeat Simple_repeat 2 48 0 4 610 229 250 23 45 chr3 3380637 3380725 -156219058 + GA-rich Low_complexity Low_complexity 2 87 0 4 610 412 167 15 24 chr3 3380725 3380831 -156218952 + Lx2 LINE L1 5707 5822 -469 4 610 373 253 0 0 chr3 3380829 3380916 -156218867 - Lx4B LINE L1 -469 6589 6503 4 610 3178 170 0 17 chr3 3380912 3381500 -156218283 - L1_Mur2 LINE L1 -4 5873 5296 4 610 2035 218 108 71 chr3 3381509 3382071 -156217712 - RMER19C LTR ERVK -28 583 1 4 610 558 315 79 85 chr3 3382647 3383001 -156216782 - MTD LTR MaLR -67 352 1 4 610 1841 131 53 16 chr3 3383046 3383365 -156216418 - L1_Mus3 LINE L1 -15 6623 6293 4 610 17602 147 12 10 chr3 3383370 3386975 -156212808 - L1_Mus3 LINE L1 -517 6459 2498 4 610 339 184 26 0 chr3 3387093 3387169 -156212614 - L1_Mus3 LINE L1 -5797 819 742 4 610 22 0 0 0 chr3 3387269 3387291 -156212492 + AT_rich Low_complexity Low_complexity 1 22 0 4 610 426 20 0 0 chr3 3388400 3388451 -156211332 + (CA)n Simple_repeat Simple_repeat 2 52 0 4 610 948 67 7 0 chr3 3388673 3388808 -156210975 - L1_Mm LINE L1 -1956 3927 3792 4 610 189 121 0 0 chr3 3388815 3388848 -156210935 + (GAAA)n Simple_repeat Simple_repeat 3 35 0 4 610 248 267 0 0 chr3 3389664 3389709 -156210074 + ID4_ SINE ID 3 47 -36 4 610 569 288 0 29 chr3 3390139 3390275 -156209508 + ID_B1 SINE B4 88 219 -5 4 610 26531 107 7 16 chr3 3390929 3393414 -156206369 - L1_Mus1 LINE L1 -2 6565 4169 4 610 194 0 39 0 chr3 3393414 3393440 -156206343 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 4 610 26531 137 11 40 chr3 3393440 3396931 -156202852 - L1_Mus1 LINE L1 -1715 4168 725 4 610 366 282 62 67 chr3 3397023 3397290 -156202493 - L1VL1 LINE L1 -5932 490 92 4 610 392 179 32 24 chr3 3397565 3397691 -156202092 + A-rich Low_complexity Low_complexity 5 131 0 4 610 27 81 0 0 chr3 3398548 3398610 -156201173 + AT_rich Low_complexity Low_complexity 1 62 0 4 610 375 224 114 55 chr3 3398942 3399037 -156200746 - Lx7 LINE L1 -2 7694 7578 4 610 420 20 0 0 chr3 3399037 3399086 -156200697 + (TTTC)n Simple_repeat Simple_repeat 1 49 0 4 610 375 224 114 55 chr3 3399086 3399201 -156200582 - Lx7 LINE L1 -119 7577 7465 4 610 333 0 0 0 chr3 3399201 3399238 -156200545 + (TAAA)n Simple_repeat Simple_repeat 2 38 0 4 610 375 224 114 55 chr3 3399238 3399262 -156200521 - Lx7 LINE L1 -232 7464 7445 4 610 2727 48 0 0 chr3 3399440 3399774 -156200009 + L1Md_T LINE L1 6249 6582 0 4 610 27915 110 7 22 chr3 3399801 3405268 -156194515 + L1Md_F2 LINE L1 208 5586 -297 4 610 7298 83 6 8 chr3 3405269 3406266 -156193517 + L1Md_F2 LINE L1 5588 6582 0 4 610 372 239 48 34 chr3 3406271 3406418 -156193365 - Lx7 LINE L1 -286 7410 7262 4 610 604 249 155 10 chr3 3406395 3406496 -156193287 + Lx6 LINE L1 6640 6767 -693 4 610 606 71 0 0 chr3 3406496 3406580 -156193203 + (GGAA)n Simple_repeat Simple_repeat 1 84 0 4 610 604 249 155 10 chr3 3406580 3406685 -156193098 + Lx6 LINE L1 6768 6876 -584 4 610 291 248 54 39 chr3 3406719 3406849 -156192934 - Lx7 LINE L1 -303 7393 7262 4 610 244 295 31 10 chr3 3406826 3406922 -156192861 + Lx6 LINE L1 6640 6737 -723 4 610 480 86 0 0 chr3 3406927 3406997 -156192786 + (GGAA)n Simple_repeat Simple_repeat 1 70 0 4 610 929 272 110 9 chr3 3406997 3407334 -156192449 + Lx6 LINE L1 6762 7132 -328 4 610 630 0 0 0 chr3 3407335 3407405 -156192378 + (CTATT)n Simple_repeat Simple_repeat 1 70 0 4 76 1416 304 60 4 chr3 3407710 3408208 -156191575 + Lx8 LINE L1 6568 7093 -380 4 611 387 0 0 0 chr3 3408348 3408391 -156191392 + (TG)n Simple_repeat Simple_repeat 2 44 0 4 611 965 333 39 32 chr3 3408391 3408874 -156190909 + Lx9 LINE L1 6342 6828 -816 4 611 262 316 113 13 chr3 3408890 3409041 -156190742 + Lx9 LINE L1 7109 7274 -370 4 611 543 66 0 0 chr3 3409081 3409157 -156190626 + (CA)n Simple_repeat Simple_repeat 2 77 0 4 611 27 0 0 0 chr3 3409350 3409377 -156190406 + AT_rich Low_complexity Low_complexity 1 27 0 4 611 2273 119 20 53 chr3 3409616 3410070 -156189713 - MusHAL1 LINE L1 -573 2139 1701 4 611 23391 130 24 5 chr3 3410202 3415101 -156184682 - L1_Mus2 LINE L1 0 6566 1567 4 611 292 293 29 36 chr3 3415100 3415238 -156184545 + Lx6 LINE L1 5834 5970 -1726 4 611 1004 128 0 17 chr3 3415698 3415873 -156183910 - L1_Mm LINE L1 -424 5459 5288 4 611 33518 72 2 3 chr3 3415867 3422174 -156177609 - L1Md_F2 LINE L1 -2 6583 184 4 611 5187 184 3 5 chr3 3422168 3423221 -156176562 - L1_Mm LINE L1 -580 5303 4253 4 611 5320 120 42 24 chr3 3423220 3424247 -156175536 + L1_Mus3 LINE L1 5460 6506 -132 4 611 1855 106 31 22 chr3 3424247 3424566 -156175217 + RLTRETN_Mm LTR ERVK 1 322 0 4 611 17486 161 28 20 chr3 3424566 3431400 -156168383 + ETnERV2-int LTR ERVK 1 7234 -172 4 611 1761 119 31 22 chr3 3431400 3431719 -156168064 + RLTRETN_Mm LTR ERVK 1 322 0 4 611 690 90 32 8 chr3 3431719 3431842 -156167941 + L1_Mus3 LINE L1 6501 6626 -12 4 611 208 209 70 0 chr3 3431911 3431954 -156167829 - MIRc SINE MIR -130 138 93 4 611 26295 78 4 0 chr3 3432164 3436586 -156163197 - L1Md_F2 LINE L1 0 6582 2146 4 611 2696 129 7 5 chr3 3436596 3437016 -156162767 - L1_Mus2 LINE L1 -1 6565 6145 4 611 13752 126 17 2 chr3 3437022 3439311 -156160472 - L1_Mm LINE L1 -134 5749 3427 4 611 1013 306 52 46 chr3 3439400 3439896 -156159887 + Lx8 LINE L1 6974 7472 -1 4 611 937 288 38 16 chr3 3439984 3440436 -156159347 + L1MC LINE L1 3516 3977 -2169 4 611 975 333 59 18 chr3 3440440 3440896 -156158887 - RMER5 LTR ERV1 -11 523 49 4 611 27953 46 1 2 chr3 3440940 3447142 -156152641 - L1Md_T LINE L1 0 6585 293 4 611 5769 154 31 6 chr3 3447149 3448241 -156151542 - MusHAL1 LINE L1 -476 2236 1117 4 611 12350 26 0 0 chr3 3448238 3450364 -156149419 - L1Md_T LINE L1 0 6582 4457 4 611 6712 190 36 31 chr3 3450367 3452443 -156147340 - L1VL4 LINE L1 -3553 2330 231 4 611 3030 73 131 5 chr3 3453481 3453909 -156145874 - RLTR45 LTR ERVK 0 482 1 4 611 215 323 16 0 chr3 3454150 3454212 -156145571 + GA-rich Low_complexity Low_complexity 4 66 0 4 611 634 248 7 7 chr3 3455054 3455196 -156144587 + B1_Mur2 SINE Alu 1 142 -7 4 611 1111 74 11 17 chr3 3455197 3455376 -156144407 + (GAA)n Simple_repeat Simple_repeat 1 178 0 4 611 713 70 0 10 chr3 3455392 3455493 -156144290 + (GAA)n Simple_repeat Simple_repeat 3 102 0 4 611 291 104 0 0 chr3 3455562 3455610 -156144173 + (CAAT)n Simple_repeat Simple_repeat 1 48 0 4 611 399 89 0 0 chr3 3456589 3456645 -156143138 + (GAAA)n Simple_repeat Simple_repeat 2 57 0 4 611 1003 120 12 0 chr3 3456646 3456813 -156142970 + (GAAAA)n Simple_repeat Simple_repeat 4 172 0 4 611 512 303 39 19 chr3 3456824 3456979 -156142804 + B3 SINE B2 2 159 -57 4 611 10017 84 2 22 chr3 3457050 3458030 -156141753 - L1_Mm LINE L1 -659 5224 4244 5 611 5943 8 0 0 chr3 3458030 3458691 -156141092 + L1Md_T LINE L1 5922 6582 0 5 611 10017 84 2 22 chr3 3458691 3459157 -156140626 - L1_Mm LINE L1 -1640 4243 3808 5 611 5280 57 0 0 chr3 3459155 3460082 -156139701 + L1Md_F2 LINE L1 5218 6144 -438 5 611 1419 119 46 17 chr3 3460082 3460321 -156139462 + L1Md_F2 LINE L1 6325 6570 -12 5 611 7099 132 38 25 chr3 3460396 3462460 -156137323 + L1_Mus3 LINE L1 4538 6636 -2 5 611 189 349 48 0 chr3 3463206 3463269 -156136514 - L2c LINE L2 -18 3369 3304 5 611 21 36 0 0 chr3 3464230 3464258 -156135525 + AT_rich Low_complexity Low_complexity 1 28 0 5 611 22 0 0 0 chr3 3464686 3464708 -156135075 + AT_rich Low_complexity Low_complexity 1 22 0 5 611 4316 22 0 0 chr3 3464777 3465270 -156134513 - MT2_Mm LTR ERVL 0 493 1 5 611 271 250 62 15 chr3 3465891 3465956 -156133827 - B4A SINE B4 -217 75 8 5 611 22 0 0 0 chr3 3466603 3466625 -156133158 + AT_rich Low_complexity Low_complexity 1 22 0 5 611 360 274 143 16 chr3 3466974 3467100 -156132683 - RLTR26 LTR ERVK 0 642 501 5 611 2198 183 35 47 chr3 3467181 3467668 -156132115 - RLTR26 LTR ERVK -161 481 1 5 611 229 173 53 13 chr3 3468070 3468146 -156131637 + (TATAA)n Simple_repeat Simple_repeat 2 80 0 5 611 706 347 84 21 chr3 3468332 3468712 -156131071 - MER21B LTR ERV1 -45 818 415 5 611 28587 29 18 17 chr3 3469028 3470666 -156129117 - L1Md_A LINE L1 -2 6580 4916 5 611 236 167 46 77 chr3 3470666 3470731 -156129052 + RMER20A LTR ERVK 186 248 -268 5 611 28587 29 18 17 chr3 3470731 3473319 -156126464 - L1Md_A LINE L1 -2 4915 2283 5 611 21 0 0 0 chr3 3473645 3473666 -156126117 + AT_rich Low_complexity Low_complexity 1 21 0 5 611 8229 77 52 0 chr3 3473667 3475575 -156124208 - L1Md_F2 LINE L1 -1 6581 4553 5 611 11243 95 15 11 chr3 3475563 3477729 -156122054 - L1Md_F2 LINE L1 -3082 2801 632 5 611 1100 116 0 0 chr3 3477730 3477894 -156121889 - L1_Mus1 LINE L1 -10 6557 6394 5 611 808 167 0 22 chr3 3477935 3478119 -156121664 + GA-rich Low_complexity Low_complexity 1 180 0 5 611 24718 123 25 16 chr3 3478482 3480207 -156119576 - Lx3_Mus LINE L1 -8 7001 5249 5 611 351 0 0 0 chr3 3480207 3480246 -156119537 + (CA)n Simple_repeat Simple_repeat 2 40 0 5 611 24718 108 23 39 chr3 3480246 3481918 -156117865 - Lx3_Mus LINE L1 -638 5248 3666 5 611 1084 90 7 0 chr3 3481918 3482063 -156117720 - B1_Mus2 SINE Alu -1 146 1 5 611 24718 108 23 39 chr3 3482063 3482470 -156117313 - Lx3_Mus LINE L1 -2221 3665 3256 5 611 252 0 0 0 chr3 3482470 3482498 -156117285 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 5 611 24718 108 23 39 chr3 3482498 3483915 -156115868 - Lx3_Mus LINE L1 -2631 3255 1819 5 611 958 118 0 0 chr3 3483963 3484099 -156115684 + B1_Mus2 SINE Alu 3 138 -9 5 611 249 57 0 0 chr3 3484099 3484134 -156115649 + (CAA)n Simple_repeat Simple_repeat 2 36 0 5 611 468 354 69 43 chr3 3484516 3484862 -156114921 + RMER5 LTR ERV1 123 477 -57 5 611 5330 116 11 3 chr3 3484922 3485656 -156114127 - L1_Mus2 LINE L1 -583 5983 5235 5 611 297 0 0 0 chr3 3485656 3485689 -156114094 + (CA)n Simple_repeat Simple_repeat 2 34 0 5 611 5330 130 20 5 chr3 3485689 3485905 -156113878 - L1_Mus2 LINE L1 -649 5234 5021 5 611 14845 157 32 21 chr3 3485909 3489246 -156110537 - L1_Mus2 LINE L1 -2099 3784 409 5 611 434 366 29 51 chr3 3490621 3490995 -156108788 - RMER5 LTR ERV1 -11 523 158 5 611 267 293 68 17 chr3 3491790 3491908 -156107875 + BLACKJACK DNA AcHobo 378 501 -2443 5 611 295 286 34 34 chr3 3492205 3492382 -156107401 + (CA)n Simple_repeat Simple_repeat 1 177 0 5 611 5836 38 0 0 chr3 3492443 3493136 -156106647 - L1Md_T LINE L1 0 6582 5890 5 611 8685 30 1 0 chr3 3493136 3494182 -156105601 + L1_Mm LINE L1 2116 3162 -2721 5 611 2294 142 73 23 chr3 3494858 3495192 -156104591 - RMER17D2 LTR ERVK 0 809 341 5 611 1118 64 17 6 chr3 3495192 3495366 -156104417 + (GA)n Simple_repeat Simple_repeat 2 177 0 5 611 2294 113 8 16 chr3 3495366 3495707 -156104076 - RMER17D2 LTR ERVK -469 340 1 5 611 208 273 22 11 chr3 3495723 3495812 -156103971 + (CA)n Simple_repeat Simple_repeat 1 90 0 5 611 235 271 122 103 chr3 3497208 3497315 -156102468 - PB1D10 SINE Alu -2 115 7 5 611 245 325 25 0 chr3 3497252 3497332 -156102451 - ID_B1 SINE B4 -72 152 71 5 611 22 56 0 0 chr3 3497354 3497390 -156102393 + AT_rich Low_complexity Low_complexity 1 36 0 5 611 901 283 98 35 chr3 3497437 3497836 -156101947 + Lx9 LINE L1 6924 7347 -297 5 611 288 0 0 0 chr3 3499638 3499670 -156100113 + (TTCA)n Simple_repeat Simple_repeat 3 34 0 5 611 470 47 0 0 chr3 3499936 3500000 -156099783 - LTRIS_Mm LTR ERV1 0 482 419 5 611 3478 22 0 0 chr3 3500001 3500418 -156099365 - LTRIS_Mm LTR ERV1 -65 417 1 1 611 255 341 58 22 chr3 3500576 3500714 -156099069 - L2 LINE L2 -1642 1777 1635 2 611 287 318 134 12 chr3 3501718 3501890 -156097893 + MIR SINE MIR 66 258 -10 3 611 549 248 36 36 chr3 3502098 3502236 -156097547 + B1F SINE Alu 10 147 -2 4 611 354 308 18 27 chr3 3502246 3502356 -156097427 + PB1D7 SINE Alu 10 118 -2 5 611 529 122 16 47 chr3 3503154 3503184 -156096599 + polypyrimidine Low_complexity Low_complexity 98 127 0 6 611 1065 136 0 0 chr3 3503184 3503361 -156096422 + (TTCC)n Simple_repeat Simple_repeat 2 178 0 7 611 529 122 16 47 chr3 3503361 3503459 -156096324 + polypyrimidine Low_complexity Low_complexity 4 97 0 8 611 198 0 0 0 chr3 3504925 3504947 -156094836 + (TG)n Simple_repeat Simple_repeat 1 22 0 9 611 660 173 191 0 chr3 3505543 3505711 -156094072 + Lx3B LINE L1 6770 6969 -4 1 611 306 0 0 0 chr3 3506596 3506630 -156093153 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 1 611 252 120 0 0 chr3 3508461 3508511 -156091272 + (A)n Simple_repeat Simple_repeat 1 50 0 1 611 275 108 0 0 chr3 3509984 3510021 -156089762 + ID4 SINE ID 3 39 -44 1 611 702 65 0 0 chr3 3510188 3510280 -156089503 + (TTCC)n Simple_repeat Simple_repeat 2 93 0 1 611 6209 116 72 15 chr3 3510312 3511650 -156088133 - Lx LINE L1 0 6654 5227 1 611 1587 187 40 0 chr3 3511650 3511949 -156087834 + L1_Mur2 LINE L1 4911 5221 -656 1 611 240 356 118 8 chr3 3512091 3512210 -156087573 - ID_B1 SINE B4 -3 221 90 1 611 625 321 81 10 chr3 3512607 3512805 -156086978 + B4 SINE B4 3 214 -78 1 611 550 80 10 0 chr3 3512805 3512942 -156086841 - L1Md_F3 LINE L1 0 6584 6471 1 611 299 226 0 0 chr3 3513039 3513101 -156086682 - B3 SINE B2 -151 65 4 2 611 218 364 92 7 chr3 3513539 3513680 -156086103 - MIR SINE MIR -79 183 31 2 611 205 136 0 43 chr3 3514146 3514192 -156085591 + T-rich Low_complexity Low_complexity 2 45 0 2 611 731 166 56 21 chr3 3514199 3514341 -156085442 - B1_Mus1 SINE Alu -1 147 1 2 611 635 248 76 16 chr3 3514351 3514528 -156085255 - B3A SINE B2 -7 188 9 2 611 200 157 39 0 chr3 3515072 3515123 -156084660 + (TTTG)n Simple_repeat Simple_repeat 4 56 0 2 611 709 235 196 0 chr3 3515182 3515361 -156084422 + B3 SINE B2 2 215 -1 2 611 25 51 0 0 chr3 3515368 3515407 -156084376 + AT_rich Low_complexity Low_complexity 1 39 0 2 611 509 277 71 58 chr3 3517247 3517557 -156082226 - L1ME1 LINE L1 -50 6129 5816 2 611 840 307 119 22 chr3 3517577 3517893 -156081890 - L1ME1 LINE L1 -15 6164 5824 2 611 351 0 0 0 chr3 3517893 3517932 -156081851 + (TTTA)n Simple_repeat Simple_repeat 1 39 0 3 611 840 311 118 21 chr3 3517932 3518382 -156081401 - L1ME1 LINE L1 -356 5823 5326 2 611 29 28 0 0 chr3 3518390 3518426 -156081357 + AT_rich Low_complexity Low_complexity 1 36 0 3 611 386 183 0 0 chr3 3518476 3518536 -156081247 - B3 SINE B2 -86 130 71 3 611 807 143 37 17 chr3 3518570 3518919 -156080864 + (TCTA)n Simple_repeat Simple_repeat 1 355 0 3 611 383 161 0 21 chr3 3518884 3518979 -156080804 + (TATG)n Simple_repeat Simple_repeat 2 94 0 3 611 265 141 57 16 chr3 3518968 3519091 -156080692 + (TCTA)n Simple_repeat Simple_repeat 3 130 0 3 611 206 80 80 0 chr3 3519091 3519141 -156080642 + (TA)n Simple_repeat Simple_repeat 2 55 0 3 611 477 115 31 0 chr3 3519146 3519242 -156080541 + (TCTA)n Simple_repeat Simple_repeat 2 100 0 3 611 765 107 0 0 chr3 3519501 3519632 -156080151 + (TC)n Simple_repeat Simple_repeat 2 132 0 3 611 363 127 0 0 chr3 3519632 3519694 -156080089 + (TG)n Simple_repeat Simple_repeat 2 64 0 3 611 899 151 0 28 chr3 3519808 3519985 -156079798 + Lx LINE L1 6483 6654 0 4 611 978 218 15 0 chr3 3520920 3521126 -156078657 + B3 SINE B2 3 211 -5 4 611 254 345 25 58 chr3 3521610 3521730 -156078053 - MIR SINE MIR -72 190 75 4 611 302 267 82 45 chr3 3521980 3522090 -156077693 - PB1D10 SINE Alu -1 116 3 4 611 21 36 0 0 chr3 3522578 3522606 -156077177 + AT_rich Low_complexity Low_complexity 1 28 0 4 611 607 309 112 39 chr3 3522620 3522906 -156076877 - MLT1B LTR MaLR -58 332 26 4 611 8717 131 11 6 chr3 3524196 3525709 -156074074 - Lx3B LINE L1 -1 6972 5456 4 611 29 28 0 0 chr3 3526503 3526539 -156073244 + AT_rich Low_complexity Low_complexity 1 36 0 4 611 659 299 45 5 chr3 3526539 3526737 -156073046 - B3 SINE B2 -10 206 1 4 611 189 74 0 0 chr3 3526823 3526850 -156072933 + (TTTAA)n Simple_repeat Simple_repeat 4 30 0 4 611 261 261 73 85 chr3 3527387 3527634 -156072149 + L1ME3A LINE L1 5695 5938 -235 5 611 252 319 109 96 chr3 3527732 3527838 -156071945 - RSINE1 SINE B4 0 165 53 5 611 5285 42 6 6 chr3 3527838 3528488 -156071295 - L1Md_F2 LINE L1 0 6582 5933 5 611 252 319 109 96 chr3 3528488 3528537 -156071246 - RSINE1 SINE B4 -113 52 8 5 611 252 233 0 118 chr3 3528569 3528637 -156071146 + RSINE1 SINE B4 5 64 -101 5 611 500 0 17 0 chr3 3528733 3528793 -156070990 + (TAGA)n Simple_repeat Simple_repeat 4 64 0 5 611 334 339 106 27 chr3 3528806 3528997 -156070786 + B3A SINE B2 4 201 -15 5 611 323 326 69 21 chr3 3529919 3530063 -156069720 + RSINE1 SINE B4 3 153 -12 5 611 1037 266 53 4 chr3 3530253 3530498 -156069285 + MTC LTR MaLR 150 406 -15 5 611 9520 108 34 3 chr3 3530761 3532195 -156067588 - L1_Mus1 LINE L1 -536 5347 3869 5 611 6952 98 4 1 chr3 3532181 3533397 -156066386 + L1_Mus1 LINE L1 5349 6567 0 5 611 583 176 16 0 chr3 3533436 3533561 -156066222 + CT-rich Low_complexity Low_complexity 2 128 0 5 611 1014 122 0 0 chr3 3533563 3533710 -156066073 - B1_Mus1 SINE Alu 0 148 2 6 611 28 0 0 0 chr3 3534196 3534224 -156065559 + AT_rich Low_complexity Low_complexity 1 28 0 6 611 609 14 0 0 chr3 3535000 3535070 -156064713 + (CA)n Simple_repeat Simple_repeat 1 70 0 6 611 710 262 41 69 chr3 3535264 3535584 -156064199 - L1M1 LINE L1 -494 5809 5499 6 611 212 0 36 0 chr3 3535586 3535614 -156064169 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 6 611 232 352 33 40 chr3 3536127 3536278 -156063505 + RSINE1 SINE B4 2 151 -14 6 611 315 0 0 0 chr3 3536287 3536322 -156063461 + (ATG)n Simple_repeat Simple_repeat 2 36 0 6 611 293 279 74 25 chr3 3536340 3536421 -156063362 - PB1D7 SINE Alu -35 85 1 6 611 321 47 0 0 chr3 3536439 3536482 -156063301 + (TC)n Simple_repeat Simple_repeat 2 44 0 6 611 472 328 33 17 chr3 3536555 3536735 -156063048 - B3A SINE B2 -11 187 5 6 611 200 35 35 0 chr3 3536786 3536815 -156062968 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 7 76 32516 97 9 4 chr3 3536820 3542804 -156056979 - L1Md_F2 LINE L1 -6 6576 564 7 612 273 312 146 54 chr3 3543033 3543368 -156056415 - Charlie10 DNA MER1_type -1468 1354 989 7 612 525 297 0 46 chr3 3543442 3543594 -156056189 - B1_Mur2 SINE Alu -2 147 3 7 612 1805 177 131 5 chr3 3543594 3543968 -156055815 - MTC LTR MaLR 0 421 1 7 612 2083 219 86 53 chr3 3543968 3544053 -156055730 - MTC-int LTR MaLR 0 1258 1142 7 612 272 27 27 0 chr3 3544053 3544090 -156055693 + (TAAA)n Simple_repeat Simple_repeat 1 38 0 7 612 2083 219 86 53 chr3 3544090 3544554 -156055229 - MTC-int LTR MaLR -117 1141 692 7 612 630 202 31 8 chr3 3544552 3544682 -156055101 - MTC LTR MaLR -284 137 5 7 612 221 83 0 27 chr3 3545197 3545234 -156054549 + (TTTTC)n Simple_repeat Simple_repeat 4 39 0 7 612 322 56 0 0 chr3 3545246 3545300 -156054483 - MusHAL1 LINE L1 -9 2703 2650 7 612 2351 67 6 63 chr3 3545311 3545660 -156054123 - L1_Mus1 LINE L1 0 6567 6239 7 612 363 240 150 0 chr3 3545787 3545887 -156053896 + ID_B1 SINE B4 83 197 -27 7 612 239 234 167 13 chr3 3546110 3546188 -156053595 - PB1 SINE Alu -2 125 36 8 612 4882 74 19 16 chr3 3546989 3547680 -156052103 - L1Md_F2 LINE L1 0 6582 5890 8 612 3805 85 4 6 chr3 3547680 3548224 -156051559 + L1_Mm LINE L1 3627 4169 -1714 8 612 961 270 81 47 chr3 3548321 3549195 -156050588 - L1M2 LINE L1 -715 5597 4692 8 612 21 71 0 0 chr3 3550234 3550276 -156049507 + AT_rich Low_complexity Low_complexity 1 42 0 8 612 728 99 9 0 chr3 3550480 3550591 -156049192 + (TTTC)n Simple_repeat Simple_repeat 2 113 0 8 612 1120 82 0 0 chr3 3550592 3550739 -156049044 - B1_Mm SINE Alu 0 147 1 8 612 661 177 42 14 chr3 3550783 3550926 -156048857 + URR1A DNA MER1_type 79 225 -1 8 612 215 250 50 0 chr3 3551153 3551213 -156048570 + MIR SINE MIR 184 246 -16 8 612 1010 91 21 0 chr3 3551312 3551455 -156048328 - B1_Mus2 SINE Alu 0 147 2 8 612 944 238 30 82 chr3 3551862 3552132 -156047651 - ORR1E LTR MaLR -4 355 100 9 612 1127 69 7 0 chr3 3552135 3552280 -156047503 + B1_Mus1 SINE Alu 2 147 -1 9 612 241 93 18 18 chr3 3552280 3552335 -156047448 + (CAAA)n Simple_repeat Simple_repeat 1 55 0 9 612 250 245 48 10 chr3 3553284 3553387 -156046396 + (CATATA)n Simple_repeat Simple_repeat 6 112 0 9 612 743 331 60 53 chr3 3553480 3553761 -156046022 + B4A SINE B4 8 290 -2 9 612 207 188 0 0 chr3 3555456 3555504 -156044279 + (TG)n Simple_repeat Simple_repeat 1 48 0 9 612 588 14 0 0 chr3 3555507 3555576 -156044207 + (CA)n Simple_repeat Simple_repeat 2 70 0 9 612 316 293 50 10 chr3 3555576 3555676 -156044107 - PB1D10 SINE Alu -13 104 1 9 612 679 270 31 11 chr3 3556857 3557048 -156042735 - MLT1D LTR MaLR 0 505 311 9 612 288 0 0 0 chr3 3557877 3557909 -156041874 + (CA)n Simple_repeat Simple_repeat 2 33 0 9 612 252 242 16 24 chr3 3558052 3558175 -156041608 + (TA)n Simple_repeat Simple_repeat 2 123 0 1 612 210 315 0 14 chr3 3558635 3558709 -156041074 + CT-rich Low_complexity Low_complexity 4 76 0 1 612 540 290 90 51 chr3 3559174 3559352 -156040431 + B3 SINE B2 26 210 -6 1 612 1149 61 0 0 chr3 3559357 3559504 -156040279 + B1_Mm SINE Alu 1 147 0 1 612 198 0 0 0 chr3 3559504 3559526 -156040257 + (A)n Simple_repeat Simple_repeat 1 22 0 1 612 21 36 0 0 chr3 3559815 3559843 -156039940 + AT_rich Low_complexity Low_complexity 1 28 0 1 612 326 324 36 9 chr3 3561265 3561377 -156038406 + PB1D10 SINE Alu 3 117 0 1 612 39 22 0 0 chr3 3561801 3561847 -156037936 + AT_rich Low_complexity Low_complexity 1 46 0 1 612 5669 72 9 100 chr3 3561874 3562781 -156037002 - L1_Mus2 LINE L1 -108 6458 5635 1 612 668 113 0 0 chr3 3562781 3562887 -156036896 + L1_Mus2 LINE L1 6459 6564 -2 1 612 427 220 72 13 chr3 3562889 3563041 -156036742 + L1MA5 LINE L1 6139 6299 -1 1 612 195 42 0 0 chr3 3563049 3563073 -156036710 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 1 612 1086 140 0 0 chr3 3563596 3563775 -156036008 + (TCC)n Simple_repeat Simple_repeat 2 180 0 1 612 266 355 64 26 chr3 3564503 3564709 -156035074 + MIRb SINE MIR 7 219 -43 1 612 682 330 29 28 chr3 3565054 3565296 -156034487 + B4A SINE B4 36 278 -14 1 612 609 110 0 0 chr3 3565308 3565417 -156034366 + (CA)n Simple_repeat Simple_repeat 2 110 0 1 612 476 296 175 16 chr3 3565620 3565809 -156033974 - RMER15 LTR ERVL -87 488 270 1 612 2939 164 5 5 chr3 3565864 3566741 -156033042 + L1Md_F LINE L1 570 1447 -2370 1 612 1122 126 0 5 chr3 3566739 3566923 -156032860 - MusHAL1 LINE L1 -2041 671 489 1 612 604 87 11 0 chr3 3566912 3567004 -156032779 + L1_Mm LINE L1 2103 2195 -3688 1 612 365 73 0 0 chr3 3567020 3567075 -156032708 - L1_Mus1 LINE L1 0 6567 6513 1 612 3849 136 19 7 chr3 3567235 3567930 -156031853 + L1Md_F LINE L1 1394 2096 -1721 1 612 9169 113 3 6 chr3 3567946 3570073 -156029710 - L1_Mus1 LINE L1 0 6567 4446 1 612 4851 129 27 1 chr3 3570054 3570874 -156028909 - MusHAL1 LINE L1 -762 1950 1110 1 612 603 144 0 26 chr3 3570863 3570977 -156028806 - L1_Mus1 LINE L1 -5394 1222 1112 1 612 10537 81 5 3 chr3 3571015 3573174 -156026609 - L1Md_F2 LINE L1 0 6582 4417 1 612 514 139 12 0 chr3 3573181 3573267 -156026516 - L1_Mm LINE L1 -1202 4681 4595 1 612 2859 228 61 16 chr3 3573262 3573997 -156025786 - L1_Mus1 LINE L1 -5670 946 179 1 612 20768 144 28 6 chr3 3574010 3575917 -156023866 + L1_Mus2 LINE L1 2180 4117 -1766 1 612 627 26 0 0 chr3 3575917 3575994 -156023789 + (GA)n Simple_repeat Simple_repeat 2 78 0 1 612 20768 127 36 13 chr3 3575994 3578372 -156021411 + L1_Mus2 LINE L1 4118 6566 0 1 612 1857 75 4 22 chr3 3579647 3579919 -156019864 + L1_Mus1 LINE L1 6301 6567 0 1 612 902 69 0 15 chr3 3580439 3580571 -156019212 + L1Md_F2 LINE L1 6445 6574 -8 1 612 26 0 0 0 chr3 3580835 3580861 -156018922 + AT_rich Low_complexity Low_complexity 1 26 0 1 612 202 189 0 0 chr3 3580863 3580900 -156018883 + (TG)n Simple_repeat Simple_repeat 2 38 0 1 612 30 27 0 0 chr3 3581758 3581795 -156017988 + AT_rich Low_complexity Low_complexity 1 37 0 1 612 355 224 80 20 chr3 3581814 3581914 -156017869 + PB1 SINE Alu 22 127 0 1 612 2847 78 8 10 chr3 3582467 3582853 -156016930 + L1_Mus2 LINE L1 6181 6565 -1 1 612 786 22 0 0 chr3 3582858 3582950 -156016833 + (GAA)n Simple_repeat Simple_repeat 2 93 0 1 612 2109 185 84 25 chr3 3583545 3584033 -156015750 - RMER5 LTR ERV1 0 534 18 1 612 378 0 0 0 chr3 3584078 3584120 -156015663 + (TC)n Simple_repeat Simple_repeat 1 42 0 1 612 342 0 0 0 chr3 3584120 3584157 -156015626 + (CA)n Simple_repeat Simple_repeat 1 38 0 1 612 425 345 21 0 chr3 3584871 3585013 -156014770 - RSINE1 SINE B4 -16 149 5 1 612 2263 217 8 33 chr3 3585053 3585539 -156014244 - Lx5 LINE L1 -9 7041 6568 1 612 1553 214 10 31 chr3 3585545 3586006 -156013777 + RMER17C LTR ERVK 15 439 -519 1 612 4749 201 10 16 chr3 3586995 3587968 -156011815 - Lx2B LINE L1 -199 6801 5835 1 612 3196 182 32 19 chr3 3587968 3588555 -156011228 - RLTR17 LTR ERVK 0 692 98 1 612 2319 152 0 0 chr3 3588576 3588924 -156010859 - L1_Mur1 LINE L1 -41 5845 5498 1 612 226 234 91 0 chr3 3588907 3588984 -156010799 + Lx2A1 LINE L1 6781 6864 -144 1 612 436 221 30 85 chr3 3588980 3589136 -156010647 + Lx2B LINE L1 6857 7047 -11 1 612 396 0 0 0 chr3 3589136 3589180 -156010603 + (TAA)n Simple_repeat Simple_repeat 3 46 0 1 612 253 324 79 26 chr3 3589900 3589976 -156009807 + B4A SINE B4 2 81 -211 1 612 278 361 108 8 chr3 3589976 3590096 -156009687 + RSINE1 SINE B4 33 164 -1 1 612 183 156 0 0 chr3 3590111 3590143 -156009640 + (CA)n Simple_repeat Simple_repeat 1 32 0 1 612 279 0 0 0 chr3 3590289 3590320 -156009463 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1 612 27078 127 15 13 chr3 3590375 3593461 -156006322 - L1_Mus2 LINE L1 0 6566 3478 1 612 612 0 0 0 chr3 3593461 3593529 -156006254 + (GTTTG)n Simple_repeat Simple_repeat 3 70 0 1 612 27078 142 12 8 chr3 3593529 3593822 -156005961 - L1_Mus2 LINE L1 -2406 3477 3183 1 612 261 0 0 0 chr3 3593822 3593851 -156005932 + (CAAAA)n Simple_repeat Simple_repeat 1 29 0 1 612 27078 148 10 10 chr3 3593851 3596354 -156003429 - L1_Mus2 LINE L1 -2701 3182 670 1 612 938 170 30 5 chr3 3596707 3596908 -156002875 - Lx3C LINE L1 -2 6974 6769 1 612 3165 42 3 0 chr3 3597038 3597418 -156002365 + L1Md_F2 LINE L1 6188 6568 -14 1 612 32 57 0 0 chr3 3597418 3597471 -156002312 + AT_rich Low_complexity Low_complexity 1 53 0 1 612 2112 126 0 19 chr3 3597684 3598008 -156001775 - ORR1A3 LTR MaLR -8 318 1 1 612 278 286 16 0 chr3 3598188 3598251 -156001532 - RSINE1 SINE B4 -38 127 64 1 612 221 83 28 0 chr3 3598265 3598301 -156001482 + (GA)n Simple_repeat Simple_repeat 2 38 0 1 612 311 333 26 0 chr3 3598332 3598449 -156001334 - Tigger5 DNA MER2_type -2241 165 46 1 612 1181 155 244 8 chr3 3598626 3598892 -156000891 + ORR1A4 LTR MaLR 1 329 0 1 612 278 300 43 43 chr3 3599221 3599336 -156000447 - RSINE1 SINE B4 -40 125 11 1 612 26 50 0 0 chr3 3599336 3599376 -156000407 + AT_rich Low_complexity Low_complexity 1 40 0 1 612 420 347 27 14 chr3 3599401 3599547 -156000236 - RSINE1 SINE B4 -8 157 10 1 612 582 272 104 10 chr3 3599898 3600091 -155999692 + B3 SINE B2 5 215 -1 1 612 5458 32 0 6 chr3 3600516 3601171 -155998612 - L1Md_A LINE L1 0 6582 5932 1 612 21 0 0 0 chr3 3602200 3602221 -155997562 + AT_rich Low_complexity Low_complexity 1 21 0 1 612 708 278 20 41 chr3 3602223 3602418 -155997365 - B3 SINE B2 -3 213 23 1 612 336 231 43 69 chr3 3602515 3602631 -155997152 - PB1D10 SINE Alu -1 116 4 1 612 614 247 6 0 chr3 3602692 3602870 -155996913 + (TA)n Simple_repeat Simple_repeat 2 180 0 1 612 444 255 0 0 chr3 3603671 3603832 -155995951 + (TG)n Simple_repeat Simple_repeat 2 162 0 1 612 26 30 0 0 chr3 3603929 3603962 -155995821 + AT_rich Low_complexity Low_complexity 1 33 0 1 612 218 170 0 41 chr3 3604099 3604148 -155995635 + (CATATA)n Simple_repeat Simple_repeat 2 48 0 1 612 254 278 27 14 chr3 3604150 3604223 -155995560 - Lx9 LINE L1 -1739 5905 5832 1 612 225 0 0 0 chr3 3604238 3604263 -155995520 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 1 612 372 123 0 0 chr3 3604304 3604377 -155995406 + (TC)n Simple_repeat Simple_repeat 2 74 0 1 612 360 309 91 33 chr3 3604715 3604989 -155994794 + L1M4 LINE L1 4061 4350 -1796 1 612 588 271 121 28 chr3 3605005 3605434 -155994349 + L1M4 LINE L1 4775 5243 -903 1 612 1815 159 93 48 chr3 3605863 3606030 -155993753 - ORR1B1 LTR MaLR 0 394 213 1 612 3994 57 0 0 chr3 3606030 3606524 -155993259 - L1Md_F2 LINE L1 -1 6581 6088 1 612 1815 159 93 48 chr3 3606524 3606733 -155993050 - ORR1B1 LTR MaLR -182 212 1 1 612 319 296 74 74 chr3 3606958 3607133 -155992650 + MIRb SINE MIR 94 268 0 1 612 349 103 29 0 chr3 3607378 3607446 -155992337 + (TCTCCC)n Simple_repeat Simple_repeat 3 72 0 1 612 479 308 46 0 chr3 3609477 3609607 -155990176 - B1F2 SINE Alu -9 140 5 1 612 41 58 0 0 chr3 3611813 3611882 -155987901 + AT_rich Low_complexity Low_complexity 1 69 0 1 612 1194 120 16 5 chr3 3612044 3612228 -155987555 - B2_Mm2 SINE B2 -8 187 2 1 612 25 31 0 0 chr3 3614520 3614552 -155985231 + AT_rich Low_complexity Low_complexity 1 32 0 1 612 358 228 54 0 chr3 3614606 3614704 -155985079 - PB1D10 SINE Alu 0 120 13 1 612 27 29 0 0 chr3 3614756 3614790 -155984993 + AT_rich Low_complexity Low_complexity 1 34 0 1 612 407 185 11 0 chr3 3614876 3614968 -155984815 + (TATATG)n Simple_repeat Simple_repeat 3 95 0 1 612 459 0 0 0 chr3 3614971 3615022 -155984761 + (GA)n Simple_repeat Simple_repeat 2 52 0 1 612 29 0 0 0 chr3 3615132 3615161 -155984622 + AT_rich Low_complexity Low_complexity 1 29 0 1 612 21 36 0 0 chr3 3615263 3615291 -155984492 + AT_rich Low_complexity Low_complexity 1 28 0 1 612 370 281 182 24 chr3 3615888 3616140 -155983643 + B4A SINE B4 1 292 0 1 612 953 99 0 40 chr3 3616364 3616375 -155983408 - B1_Mus1 SINE Alu -1 147 139 1 612 270 0 0 0 chr3 3616375 3616405 -155983378 + (TTTA)n Simple_repeat Simple_repeat 1 30 0 1 612 953 99 0 40 chr3 3616405 3616541 -155983242 - B1_Mus1 SINE Alu -10 138 6 1 612 434 68 22 22 chr3 3616541 3616631 -155983152 + (TTTTG)n Simple_repeat Simple_repeat 1 90 0 1 612 370 136 125 0 chr3 3617114 3617202 -155982581 - L1ME3A LINE L1 -4 6169 6071 1 612 23 68 0 0 chr3 3617465 3617509 -155982274 + AT_rich Low_complexity Low_complexity 1 44 0 1 612 666 263 29 0 chr3 3617509 3617646 -155982137 + B3 SINE B2 1 141 -75 1 612 279 0 0 0 chr3 3618423 3618454 -155981329 + (A)n Simple_repeat Simple_repeat 1 31 0 1 612 220 382 19 13 chr3 3618557 3618716 -155981067 + CT-rich Low_complexity Low_complexity 1 160 0 1 612 21 0 0 0 chr3 3618901 3618922 -155980861 + AT_rich Low_complexity Low_complexity 1 21 0 2 612 359 372 0 0 chr3 3618940 3619034 -155980749 - ID_B1 SINE B4 -49 175 82 2 612 1035 152 0 0 chr3 3619058 3619236 -155980547 + CT-rich Low_complexity Low_complexity 1 178 0 2 612 3759 76 0 2 chr3 3619522 3620012 -155979771 + L1_Mus1 LINE L1 6079 6567 0 2 612 261 57 0 0 chr3 3620214 3620249 -155979534 + (TTTTG)n Simple_repeat Simple_repeat 3 37 0 2 612 279 354 49 0 chr3 3620267 3620349 -155979434 - B1F1 SINE Alu -52 97 12 2 612 22 35 0 0 chr3 3620416 3620445 -155979338 + AT_rich Low_complexity Low_complexity 1 29 0 2 612 599 246 29 22 chr3 3621727 3621907 -155977876 - MTE2a LTR MaLR -6 413 194 2 612 6898 145 92 15 chr3 3621910 3623822 -155975961 + Lx2 LINE L1 4696 6791 -206 2 612 424 138 12 0 chr3 3623823 3623903 -155975880 + Lx2 LINE L1 6917 6997 0 2 612 281 351 93 43 chr3 3623946 3624086 -155975697 - MTE2a LTR MaLR -225 154 8 2 612 450 114 0 0 chr3 3624614 3624684 -155975099 + (TG)n Simple_repeat Simple_repeat 1 70 0 2 612 350 336 55 23 chr3 3624688 3624816 -155974967 - RSINE1 SINE B4 -28 137 6 2 612 1121 116 23 11 chr3 3625275 3625623 -155974160 + (TCTA)n Simple_repeat Simple_repeat 1 352 0 2 612 1071 61 12 12 chr3 3625647 3625813 -155973970 + (TCTA)n Simple_repeat Simple_repeat 3 168 0 2 612 1023 96 0 52 chr3 3626192 3626346 -155973437 - B1_Mm SINE Alu 0 147 2 2 612 268 229 0 14 chr3 3626374 3626445 -155973338 + (TG)n Simple_repeat Simple_repeat 1 70 0 2 612 472 318 49 49 chr3 3626445 3626650 -155973133 - B3 SINE B2 -11 205 1 2 612 327 157 0 0 chr3 3627612 3627682 -155972101 + (TA)n Simple_repeat Simple_repeat 2 71 0 2 612 23 54 0 0 chr3 3628208 3628245 -155971538 + AT_rich Low_complexity Low_complexity 1 37 0 2 612 415 333 20 0 chr3 3629548 3629687 -155970096 + B1F2 SINE Alu 7 150 0 2 612 23 54 0 0 chr3 3630563 3630600 -155969183 + AT_rich Low_complexity Low_complexity 1 37 0 2 612 249 325 12 12 chr3 3630750 3630834 -155968949 + Tigger13a DNA MER2_type 421 504 -267 2 612 428 125 137 59 chr3 3630834 3630906 -155968877 - Lx2 LINE L1 -1013 5984 5908 2 612 180 0 0 0 chr3 3630906 3630926 -155968857 + (TTG)n Simple_repeat Simple_repeat 2 21 0 2 612 428 125 137 59 chr3 3630926 3630955 -155968828 - Lx2 LINE L1 -1090 5907 5875 2 612 2910 139 29 40 chr3 3630956 3631474 -155968309 + Lx2 LINE L1 6486 6997 0 2 612 293 0 27 0 chr3 3632842 3632879 -155966904 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 2 612 819 97 0 0 chr3 3632887 3633001 -155966782 - B1_Mus1 SINE Alu -32 116 3 2 612 3891 49 0 4 chr3 3633015 3633505 -155966278 - L1Md_F3 LINE L1 -1 6583 6096 2 612 256 321 64 0 chr3 3635789 3635898 -155963885 - Lx7 LINE L1 -388 7308 7193 2 612 1507 247 97 8 chr3 3635971 3636123 -155963660 - Lx6 LINE L1 -179 7281 7124 2 612 225 0 0 0 chr3 3636123 3636148 -155963635 + (CA)n Simple_repeat Simple_repeat 2 26 0 2 612 1507 247 97 8 chr3 3636148 3636378 -155963405 - Lx6 LINE L1 -337 7123 6866 2 612 342 152 0 0 chr3 3636730 3636789 -155962994 + (TA)n Simple_repeat Simple_repeat 2 60 0 2 612 251 250 211 36 chr3 3640306 3640472 -155959311 - L1MB8 LINE L1 -197 5981 5787 2 612 498 258 54 63 chr3 3640498 3640724 -155959059 - L1MB8 LINE L1 -517 5666 5436 2 612 220 306 70 62 chr3 3641385 3641514 -155958269 - MIRb SINE MIR -71 197 68 2 612 2584 116 56 12 chr3 3646135 3646563 -155953220 - Lx LINE L1 -3 6651 6205 2 612 192 350 72 18 chr3 3646993 3647159 -155952624 - L2 LINE L2 -422 2997 2823 2 612 562 280 0 40 chr3 3648251 3648268 -155951515 - RSINE1 SINE B4 -19 146 133 2 612 423 31 30 15 chr3 3648268 3648334 -155951449 + (TG)n Simple_repeat Simple_repeat 2 68 0 2 612 562 280 0 40 chr3 3648334 3648465 -155951318 - RSINE1 SINE B4 -33 132 4 2 612 186 284 147 13 chr3 3648635 3648710 -155951073 - MIRb SINE MIR -8 260 176 2 612 269 282 0 52 chr3 3649006 3649122 -155950661 + L1MA9 LINE L1 6170 6279 -33 2 612 751 276 68 0 chr3 3649442 3649634 -155950149 + B3 SINE B2 2 206 -10 2 612 1943 219 22 7 chr3 3650018 3650433 -155949350 - MTC LTR MaLR 0 421 1 2 612 376 355 116 71 chr3 3650445 3650712 -155949071 + B4 SINE B4 3 281 -11 2 612 227 132 0 50 chr3 3651662 3651702 -155948081 - L1MD2 LINE L1 -6089 458 421 2 612 234 128 0 0 chr3 3651818 3651857 -155947926 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 2 612 378 284 73 64 chr3 3653219 3653452 -155946331 - Tigger6a DNA MER2_type -12 1071 837 2 612 1360 305 100 32 chr3 3653861 3654196 -155945587 - Tigger6a DNA MER2_type -323 760 395 2 612 693 0 0 0 chr3 3654196 3654273 -155945510 + (TTC)n Simple_repeat Simple_repeat 3 79 0 2 612 1360 305 100 32 chr3 3654273 3654648 -155945135 - Tigger6a DNA MER2_type -689 394 2 2 612 405 102 0 0 chr3 3655571 3655630 -155944153 + (TA)n Simple_repeat Simple_repeat 1 59 0 2 612 209 77 0 49 chr3 3657566 3657607 -155942176 + (TTTTTG)n Simple_repeat Simple_repeat 4 42 0 2 612 627 103 0 0 chr3 3658450 3658547 -155941236 + (TC)n Simple_repeat Simple_repeat 2 98 0 2 612 370 273 0 0 chr3 3659077 3659165 -155940618 - MLT1A0 LTR MaLR -19 355 268 2 612 396 351 30 12 chr3 3659200 3659367 -155940416 - MLT1A0 LTR MaLR -195 170 1 2 612 29 70 0 0 chr3 3659622 3659679 -155940104 + AT_rich Low_complexity Low_complexity 1 57 0 2 612 213 39 0 0 chr3 3660189 3660215 -155939568 + (TTTG)n Simple_repeat Simple_repeat 4 29 0 2 612 1572 181 228 17 chr3 3660282 3660637 -155939146 - RLTR23 LTR ERV1 0 430 1 2 612 449 84 14 0 chr3 3661059 3661130 -155938653 + (GA)n Simple_repeat Simple_repeat 1 72 0 2 612 3618 184 48 21 chr3 3661289 3662145 -155937638 + L1_Mur3 LINE L1 1926 2804 -3076 2 612 2296 140 0 0 chr3 3662142 3662485 -155937298 - Lx2 LINE L1 -380 6617 6275 2 612 1521 174 20 17 chr3 3662489 3662787 -155936996 + Lx2 LINE L1 6698 6996 -1 2 612 859 142 53 44 chr3 3662801 3663007 -155936776 + L1_Mur3 LINE L1 2862 3069 -2811 2 612 1505 195 25 11 chr3 3663009 3663377 -155936406 + L1_Mur3 LINE L1 1367 1739 -4141 2 612 810 286 51 45 chr3 3663352 3663663 -155936120 + Lx6 LINE L1 5961 6273 -1187 2 612 897 307 152 14 chr3 3663663 3664109 -155935674 + Lx7 LINE L1 6529 7036 -660 2 612 1012 106 6 6 chr3 3664124 3664304 -155935479 + (GAA)n Simple_repeat Simple_repeat 1 180 0 2 612 1325 316 27 11 chr3 3664340 3664735 -155935048 + Lx6 LINE L1 6966 7367 -93 2 612 348 64 0 0 chr3 3664735 3664782 -155935001 + (TG)n Simple_repeat Simple_repeat 2 48 0 2 612 1325 316 27 11 chr3 3664782 3664834 -155934949 + Lx6 LINE L1 7368 7419 -41 2 612 25 0 0 0 chr3 3664839 3664864 -155934919 + AT_rich Low_complexity Low_complexity 1 25 0 2 612 2165 200 85 4 chr3 3664864 3665214 -155934569 + L1_Mur3 LINE L1 4269 4640 -1240 2 612 414 0 0 0 chr3 3665214 3665260 -155934523 + (CA)n Simple_repeat Simple_repeat 2 47 0 2 612 2165 200 85 4 chr3 3665260 3665437 -155934346 + L1_Mur3 LINE L1 4641 4838 -1042 2 612 7106 153 3 43 chr3 3665436 3666791 -155932992 + L1_Mm LINE L1 2694 3993 -1890 2 612 2073 194 122 4 chr3 3666810 3667292 -155932491 - RLTR13D6 LTR ERVK -363 539 1 2 612 1494 157 14 18 chr3 3667304 3667583 -155932200 - ETnERV3-int LTR ERVK 0 5808 5531 2 612 280 113 0 75 chr3 3667598 3667665 -155932118 - RLTR45-int LTR ERVK -1172 6072 6011 2 612 1267 152 18 16 chr3 3667762 3668007 -155931776 - MMETn-int LTR ERVK -980 6426 6221 2 612 1751 187 30 95 chr3 3668052 3668674 -155931109 - MMETn-int LTR ERVK -1703 3141 2611 2 612 1248 75 17 0 chr3 3668669 3668842 -155930941 - RLTR45-int LTR ERVK -3509 3897 3722 2 76 13093 71 9 5 chr3 3668842 3671080 -155928703 + L1Md_F2 LINE L1 2301 5586 -297 2 613 7333 76 2 16 chr3 3671081 3672076 -155927707 + L1Md_F2 LINE L1 5588 6568 -14 2 613 1568 164 125 42 chr3 3672084 3672517 -155927266 - RLTR45-int LTR ERVK -4688 2556 2088 2 613 579 275 114 36 chr3 3672527 3672885 -155926898 - ETnERV-int LTR ERVK -2927 387 2 2 613 2375 114 61 28 chr3 3672886 3673282 -155926501 - RLTR9E LTR ERVK 0 409 1 2 613 5376 132 19 1 chr3 3673314 3674149 -155925634 + Lx3_Mus LINE L1 6143 6992 -17 2 613 2461 185 25 12 chr3 3674305 3674786 -155924997 - RLTR28 LTR ERVL 0 524 38 2 613 3833 149 25 62 chr3 3675731 3676722 -155923061 - RLTR13D6 LTR ERVK 0 983 1 2 613 368 353 101 0 chr3 3676722 3676830 -155922953 - B3A SINE B2 -49 149 30 2 613 6226 124 38 10 chr3 3676830 3677788 -155921995 + Lx LINE L1 5475 6463 -191 2 613 2710 118 12 2 chr3 3677788 3678205 -155921578 + BGLII LTR ERVK 1 421 0 2 613 6226 114 43 12 chr3 3678205 3678395 -155921388 + Lx LINE L1 6464 6652 -2 2 613 798 255 41 30 chr3 3678430 3678697 -155921086 - Lx8 LINE L1 -533 6940 6671 2 613 3316 38 5 5 chr3 3678719 3679115 -155920668 - MTA_Mm LTR MaLR 0 396 1 2 613 340 290 37 78 chr3 3679188 3679431 -155920352 - Lx8 LINE L1 -1546 5927 5695 2 613 350 177 25 0 chr3 3679966 3680045 -155919738 + (TATATG)n Simple_repeat Simple_repeat 3 83 0 2 613 261 211 83 10 chr3 3680124 3680220 -155919563 - Lx9 LINE L1 -7 7637 7535 2 613 479 278 89 22 chr3 3680212 3680491 -155919292 - Lx8 LINE L1 -2127 4019 3692 2 613 338 106 0 0 chr3 3680511 3680558 -155919225 - ORR1C1 LTR MaLR -8 370 324 2 613 5102 224 55 68 chr3 3680610 3681744 -155918039 - Lx5 LINE L1 -1 7049 5883 2 613 297 51 0 0 chr3 3681744 3681783 -155918000 + (TG)n Simple_repeat Simple_repeat 2 40 0 2 613 5102 188 12 6 chr3 3681783 3682378 -155917405 - Lx5 LINE L1 -1168 5882 5332 2 613 1745 215 79 26 chr3 3682391 3682912 -155916871 + RLTR20C LTR ERVK 5 532 -2 2 613 7064 146 13 12 chr3 3682912 3683197 -155916586 + Lx2 LINE L1 5808 6084 -913 2 613 8225 22 0 3 chr3 3683197 3684129 -155915654 - RLTR13B3 LTR ERVK 0 929 1 2 613 7064 146 13 12 chr3 3684129 3685032 -155914751 + Lx2 LINE L1 6085 6997 0 2 613 747 218 0 0 chr3 3685046 3685243 -155914540 - Lx5 LINE L1 -566 5311 5115 2 613 4566 115 123 11 chr3 3685243 3685996 -155913787 - L1_Mus3 LINE L1 -2 6636 5799 2 613 1575 85 0 0 chr3 3685996 3686242 -155913541 + L1_Mus3 LINE L1 5563 5808 -830 2 613 3455 188 7 10 chr3 3686238 3687011 -155912772 - Lx5 LINE L1 -749 5128 4359 2 613 362 69 0 49 chr3 3687123 3687184 -155912599 - L1Md_F2 LINE L1 -12 6570 6513 2 613 2026 117 3 67 chr3 3687185 3687542 -155912241 - IAPLTR1a_Mm LTR ERVK -3 334 1 2 613 55328 11 2 7 chr3 3687542 3694047 -155905736 - IAPEz-int LTR ERVK 0 6481 9 2 613 2026 117 3 67 chr3 3694048 3694405 -155905378 - IAPLTR1a_Mm LTR ERVK -3 334 1 2 613 6772 84 0 158 chr3 3694405 3696601 -155903182 - L1Md_F2 LINE L1 -65 6517 4673 2 613 1348 100 0 0 chr3 3696598 3696788 -155902995 + L1Md_F3 LINE L1 5397 5586 -297 2 613 7535 68 3 5 chr3 3696789 3697788 -155901995 + L1Md_F3 LINE L1 5588 6584 0 2 613 24817 108 18 3 chr3 3697788 3702598 -155897185 - L1Md_F LINE L1 -824 5059 177 2 613 10436 203 42 11 chr3 3702616 3704846 -155894937 - Lx5 LINE L1 -1510 4367 2057 2 613 303 93 0 0 chr3 3704846 3704889 -155894894 + (TG)n Simple_repeat Simple_repeat 2 44 0 2 613 10436 203 42 11 chr3 3704889 3705291 -155894492 - Lx5 LINE L1 -3821 2056 1652 2 613 691 245 14 5 chr3 3705297 3705506 -155894277 + Lx5 LINE L1 1439 1649 -4231 2 613 431 180 12 137 chr3 3705513 3705618 -155894165 + L1_Mur3 LINE L1 1958 2049 -3828 2 613 261 0 0 0 chr3 3705618 3705647 -155894136 + (CA)n Simple_repeat Simple_repeat 1 29 0 2 613 431 180 12 137 chr3 3705647 3705702 -155894081 + L1_Mur3 LINE L1 2050 2098 -3779 2 613 6242 142 16 5 chr3 3705701 3707350 -155892433 + L1_Mus3 LINE L1 4968 6638 0 2 613 335 204 56 11 chr3 3707341 3707430 -155892353 + L1_Mur3 LINE L1 2077 2169 -3708 2 613 1428 221 15 37 chr3 3707431 3707755 -155892028 - ORR1C1 LTR MaLR -61 317 1 2 613 496 294 75 19 chr3 3707757 3708612 -155891171 - L1_Mur3 LINE L1 -2186 3691 2806 2 613 17503 147 108 14 chr3 3710067 3715658 -155884125 + L1_Mus2 LINE L1 409 6566 0 2 613 255 31 0 0 chr3 3715776 3715808 -155883975 + (CAAAAA)n Simple_repeat Simple_repeat 4 35 0 2 613 276 125 14 27 chr3 3716803 3716877 -155882906 - Lx LINE L1 0 6654 6582 2 613 203 305 90 9 chr3 3717263 3717397 -155882386 - MIR SINE MIR -34 234 89 2 613 37 62 0 0 chr3 3717547 3717612 -155882171 + AT_rich Low_complexity Low_complexity 1 65 0 2 613 1031 108 72 0 chr3 3717985 3718151 -155881632 - Lx3_Mus LINE L1 -453 6556 6379 3 613 2481 111 19 3 chr3 3718151 3718523 -155881260 + Lx3_Mus LINE L1 6632 7009 0 3 613 314 308 7 14 chr3 3718698 3718846 -155880937 - L1MA8 LINE L1 -12 6279 6133 3 613 2731 114 40 5 chr3 3719760 3720184 -155879599 - L1_Mus3 LINE L1 0 6638 6200 3 613 2012 194 27 5 chr3 3720849 3721254 -155878529 - L1_Mur2 LINE L1 -162 5715 5302 3 613 37033 36 0 0 chr3 3721246 3726464 -155873319 - L1Md_T LINE L1 0 6582 1365 3 613 4633 162 68 8 chr3 3726464 3727037 -155872746 - L1_Mur2 LINE L1 -553 5324 4714 3 613 204 40 0 0 chr3 3727037 3727062 -155872721 + (TTA)n Simple_repeat Simple_repeat 3 27 0 3 613 4633 162 68 8 chr3 3727062 3727397 -155872386 - L1_Mur2 LINE L1 -1164 4713 4361 3 613 7030 88 14 15 chr3 3727397 3728560 -155871223 + L1_Mus1 LINE L1 5396 6558 -9 3 613 16818 122 20 17 chr3 3728566 3732220 -155867563 + L1Md_F LINE L1 52 3717 -2166 3 613 1365 95 5 0 chr3 3732220 3732420 -155867363 + L1Md_F2 LINE L1 6380 6580 -2 3 613 180 0 0 0 chr3 3732423 3732443 -155867340 + (TAAAA)n Simple_repeat Simple_repeat 1 20 0 3 613 214 217 22 0 chr3 3733192 3733238 -155866545 + GA-rich Low_complexity Low_complexity 1 47 0 3 613 256 226 106 11 chr3 3733950 3734044 -155865739 + Charlie1 DNA MER1_type 2471 2573 -208 3 613 5168 169 41 9 chr3 3734048 3735022 -155864761 - Lx2 LINE L1 -12 6985 5981 3 613 13765 185 50 11 chr3 3735022 3735450 -155864333 - L1_Mur2 LINE L1 -714 5163 4726 3 613 234 0 0 0 chr3 3735450 3735476 -155864307 + (TTG)n Simple_repeat Simple_repeat 2 27 0 3 613 13765 185 50 11 chr3 3735476 3738016 -155861767 - L1_Mur2 LINE L1 -1152 4725 2077 3 613 821 216 38 87 chr3 3738014 3738303 -155861480 - MusHAL1 LINE L1 -2003 709 435 3 613 7346 78 9 5 chr3 3738307 3739734 -155860049 - L1Md_F2 LINE L1 0 6582 5154 3 613 186 189 0 0 chr3 3739848 3739885 -155859898 + CT-rich Low_complexity Low_complexity 2 38 0 3 613 3379 57 0 2 chr3 3739943 3740367 -155859416 - L1Md_F2 LINE L1 -13 6569 6147 3 613 1806 216 29 5 chr3 3740374 3741078 -155858705 - L1_Mur2 LINE L1 -4230 1647 918 3 613 329 116 29 0 chr3 3741420 3741489 -155858294 + L1Md_T LINE L1 6512 6582 0 3 613 353 327 40 45 chr3 3741653 3741829 -155857954 + RMER20A LTR ERVK 340 514 -2 3 613 29 28 0 0 chr3 3742449 3742485 -155857298 + AT_rich Low_complexity Low_complexity 1 36 0 3 613 712 284 62 100 chr3 3742848 3743267 -155856516 - Lx8 LINE L1 -4 7469 7067 3 613 31 26 0 0 chr3 3743556 3743594 -155856189 + AT_rich Low_complexity Low_complexity 1 38 0 3 613 332 315 92 0 chr3 3743663 3743847 -155855936 - L1MEf LINE L1 -4847 1353 1153 3 613 491 75 25 0 chr3 3743896 3743976 -155855807 + (TCTCTG)n Simple_repeat Simple_repeat 3 84 0 3 613 231 213 0 16 chr3 3744041 3744103 -155855680 + T-rich Low_complexity Low_complexity 4 64 0 3 613 30 59 0 0 chr3 3744151 3744202 -155855581 + AT_rich Low_complexity Low_complexity 1 51 0 3 613 716 184 44 0 chr3 3744212 3744348 -155855435 - ORR1C2 LTR MaLR 0 384 243 3 613 1527 290 101 102 chr3 3744336 3744832 -155854951 - ORR1C2-int LTR MaLR -423 947 422 3 613 1000 90 20 14 chr3 3744832 3744978 -155854805 + B1_Mus1 SINE Alu 1 147 -1 3 613 1527 290 101 102 chr3 3744978 3745099 -155854684 - ORR1C2-int LTR MaLR -949 421 327 3 613 775 100 137 8 chr3 3745099 3745230 -155854553 - B1_Mus1 SINE Alu 0 148 1 3 613 1527 290 101 102 chr3 3745230 3745501 -155854282 - ORR1C2-int LTR MaLR -1044 326 59 3 613 378 305 13 90 chr3 3745483 3745638 -155854145 + MTD LTR MaLR 241 383 -36 3 613 250 323 78 108 chr3 3745698 3746101 -155853682 - MLT1C LTR MaLR -13 377 2 3 613 1820 207 61 0 chr3 3746595 3746938 -155852845 + ORR1D1 LTR MaLR 3 366 -8 3 613 387 0 0 0 chr3 3747280 3747323 -155852460 + (TTTA)n Simple_repeat Simple_repeat 4 46 0 3 613 434 262 78 26 chr3 3747324 3747477 -155852306 - RSINE1 SINE B4 -2 163 3 3 613 180 384 87 8 chr3 3748505 3748631 -155851152 - L2c LINE L2 0 3387 3252 3 613 1247 79 0 6 chr3 3749299 3749477 -155850306 + (TTTC)n Simple_repeat Simple_repeat 3 179 0 3 613 230 51 51 0 chr3 3749503 3749542 -155850241 + (TCTCTG)n Simple_repeat Simple_repeat 2 42 0 3 613 21 0 0 0 chr3 3750162 3750183 -155849600 + AT_rich Low_complexity Low_complexity 1 21 0 3 613 25 31 0 0 chr3 3752480 3752512 -155847271 + AT_rich Low_complexity Low_complexity 1 32 0 3 613 349 214 46 46 chr3 3753650 3753758 -155846025 + PB1D7 SINE Alu 13 120 0 3 613 262 107 0 35 chr3 3753758 3753816 -155845967 + (CAAAA)n Simple_repeat Simple_repeat 1 56 0 3 613 501 259 36 15 chr3 3753854 3753991 -155845792 + B1_Mur1 SINE Alu 10 149 0 3 613 22 56 0 0 chr3 3755013 3755049 -155844734 + AT_rich Low_complexity Low_complexity 1 36 0 3 613 216 158 40 0 chr3 3755331 3755407 -155844376 + A-rich Low_complexity Low_complexity 1 79 0 3 613 540 81 0 0 chr3 3755389 3755463 -155844320 + (GGAA)n Simple_repeat Simple_repeat 3 76 0 3 613 226 377 106 6 chr3 3755579 3755739 -155844044 - MIR3 SINE MIR -23 185 10 3 613 21 0 0 0 chr3 3755802 3755823 -155843960 + AT_rich Low_complexity Low_complexity 1 21 0 3 613 261 316 40 0 chr3 3756730 3756806 -155842977 + ID SINE ID 3 81 -143 3 613 299 269 32 0 chr3 3757070 3757163 -155842620 + (TATG)n Simple_repeat Simple_repeat 4 99 0 3 613 297 185 0 0 chr3 3757678 3757743 -155842040 + (TA)n Simple_repeat Simple_repeat 1 65 0 3 613 44 0 0 0 chr3 3757759 3757803 -155841980 + AT_rich Low_complexity Low_complexity 1 44 0 3 613 4605 150 4 18 chr3 3758230 3759004 -155840779 + Lx LINE L1 5892 6654 0 3 613 550 337 35 0 chr3 3759631 3759800 -155839983 - MTEa LTR MaLR -200 179 5 3 613 617 312 10 0 chr3 3762179 3762384 -155837399 - B3 SINE B2 -7 209 3 3 613 339 25 0 0 chr3 3765433 3765473 -155834310 + (TTTA)n Simple_repeat Simple_repeat 1 40 0 3 613 605 211 98 0 chr3 3765655 3765778 -155834005 - MTC LTR MaLR -286 135 1 3 613 376 357 16 31 chr3 3765820 3766011 -155833772 - Lx9 LINE L1 -934 6710 6523 3 613 564 15 0 0 chr3 3766285 3766350 -155833433 + (CA)n Simple_repeat Simple_repeat 2 66 0 3 613 186 143 0 0 chr3 3766363 3766398 -155833385 + (TATG)n Simple_repeat Simple_repeat 2 36 0 3 613 563 92 37 0 chr3 3766430 3766539 -155833244 + (TCTA)n Simple_repeat Simple_repeat 2 114 0 3 613 1600 118 0 4 chr3 3767271 3767509 -155832274 + L1_Mus4 LINE L1 6397 6633 -3 3 613 2762 96 0 84 chr3 3767610 3768064 -155831719 + L1_Mus2 LINE L1 6151 6566 0 3 613 678 242 97 64 chr3 3768404 3768700 -155831083 - Lx7 LINE L1 -220 7476 7110 3 613 899 170 0 0 chr3 3768700 3768847 -155830936 + B1_Mus1 SINE Alu 1 147 -1 3 613 558 118 0 0 chr3 3768856 3768958 -155830825 + (TAAAAA)n Simple_repeat Simple_repeat 4 105 0 3 613 285 170 21 0 chr3 3768958 3769005 -155830778 - Lx7 LINE L1 -443 7253 7206 3 613 35173 69 6 7 chr3 3768997 3775109 -155824674 - L1Md_F3 LINE L1 -1 6583 479 3 613 1606 231 27 18 chr3 3775109 3775510 -155824273 - Lx7 LINE L1 -475 7221 6817 3 613 1677 244 85 67 chr3 3775690 3776300 -155823483 + RMER17A-int LTR ERVK 1107 1727 -1 3 613 4094 211 60 3 chr3 3776302 3777161 -155822622 + RMER13B LTR ERVK 1 908 0 3 613 3318 265 108 34 chr3 3777161 3777715 -155822068 - Lx6 LINE L1 -677 6783 6163 3 613 540 111 0 0 chr3 3777715 3777796 -155821987 + (TA)n Simple_repeat Simple_repeat 2 82 0 3 613 3318 223 128 36 chr3 3777796 3778395 -155821388 - Lx6 LINE L1 -1298 6162 5520 3 613 189 0 0 0 chr3 3778657 3778678 -155821105 + (CA)n Simple_repeat Simple_repeat 2 22 0 3 613 219 361 27 14 chr3 3779708 3779781 -155820002 - MIR SINE MIR -174 88 15 3 613 445 322 58 32 chr3 3780492 3780646 -155819137 - RSINE1 SINE B4 -4 161 4 3 613 2059 96 36 3 chr3 3781836 3782139 -155817644 + L1_Mus3 LINE L1 6321 6633 -5 3 613 27 0 0 0 chr3 3782139 3782166 -155817617 + AT_rich Low_complexity Low_complexity 1 27 0 3 613 264 104 13 118 chr3 3782613 3782689 -155817094 + A-rich Low_complexity Low_complexity 4 71 0 3 613 311 306 138 69 chr3 3782823 3783142 -155816641 + MLT2B5 LTR ERVL 215 555 -46 3 613 622 162 6 6 chr3 3783142 3783303 -155816480 + CT-rich Low_complexity Low_complexity 1 161 0 3 613 207 0 0 0 chr3 3783303 3783326 -155816457 + (TA)n Simple_repeat Simple_repeat 2 24 0 3 613 492 18 0 0 chr3 3783326 3783382 -155816401 + (TG)n Simple_repeat Simple_repeat 2 58 0 3 613 39 38 0 0 chr3 3783638 3783691 -155816092 + AT_rich Low_complexity Low_complexity 1 53 0 3 613 21 36 0 0 chr3 3786505 3786533 -155813250 + AT_rich Low_complexity Low_complexity 1 28 0 3 613 396 40 0 0 chr3 3786650 3786700 -155813083 + (TG)n Simple_repeat Simple_repeat 2 51 0 3 613 708 138 0 0 chr3 3787000 3787116 -155812667 + (TCC)n Simple_repeat Simple_repeat 2 117 0 3 613 1355 94 0 0 chr3 3787591 3787782 -155812001 - L1_Mus2 LINE L1 0 6566 6376 3 613 659 291 75 10 chr3 3788277 3788478 -155811305 + B3 SINE B2 1 214 -2 3 613 7254 78 0 0 chr3 3789497 3790469 -155809314 - L1_Mm LINE L1 -2762 3121 2150 3 613 3125 61 2 0 chr3 3790460 3790855 -155808928 + L1Md_F2 LINE L1 5196 5591 -292 3 613 7929 51 2 2 chr3 3790855 3791844 -155807939 + L1Md_F2 LINE L1 5594 6582 0 3 613 1082 54 0 20 chr3 3792450 3792601 -155807182 + B1_Mus1 SINE Alu 1 148 0 3 613 469 80 27 0 chr3 3792601 3792676 -155807107 + (GAAAA)n Simple_repeat Simple_repeat 4 80 0 3 613 4862 150 40 21 chr3 3792834 3793692 -155806091 - Lx LINE L1 0 6654 5781 3 613 6349 144 24 95 chr3 3793697 3796067 -155803716 - L1_Mus3 LINE L1 -7 6631 4406 3 613 6285 148 42 20 chr3 3796064 3798144 -155801639 - L1VL1 LINE L1 -1593 2321 322 3 613 4824 101 46 3 chr3 3798167 3798881 -155800902 + L1_Mus3 LINE L1 5894 6638 0 3 613 415 299 0 33 chr3 3799638 3799728 -155800055 + PB1D10 SINE Alu 10 96 -21 3 613 475 267 81 20 chr3 3799817 3799966 -155799817 + B3A SINE B2 3 160 -38 3 613 453 19 0 0 chr3 3799980 3800034 -155799749 + (CA)n Simple_repeat Simple_repeat 2 55 0 3 613 27 62 0 0 chr3 3800483 3800531 -155799252 + AT_rich Low_complexity Low_complexity 1 48 0 3 613 213 39 0 0 chr3 3800570 3800596 -155799187 + (TG)n Simple_repeat Simple_repeat 1 26 0 3 614 3584 266 40 23 chr3 3801237 3801606 -155798177 - Lx5 LINE L1 -5 7045 6674 4 614 2869 67 33 8 chr3 3801606 3801996 -155797787 + MTB LTR MaLR 1 400 0 4 614 3584 266 40 23 chr3 3801996 3802551 -155797232 - Lx5 LINE L1 -377 6673 6105 4 614 324 111 0 0 chr3 3804270 3804324 -155795459 + (TG)n Simple_repeat Simple_repeat 1 54 0 4 614 336 24 0 0 chr3 3804324 3804364 -155795419 + (GA)n Simple_repeat Simple_repeat 1 41 0 4 614 1108 209 27 0 chr3 3805405 3805630 -155794153 - Lx9 LINE L1 -400 7244 7014 4 614 524 250 80 13 chr3 3805656 3805806 -155793977 + Lx9 LINE L1 7251 7410 -234 4 614 993 215 41 18 chr3 3805807 3806025 -155793758 + ORR1C2 LTR MaLR 162 384 0 4 614 183 42 0 0 chr3 3807176 3807200 -155792583 + (TTCTG)n Simple_repeat Simple_repeat 4 27 0 4 614 1200 53 0 0 chr3 3807203 3807355 -155792428 + (TCTCC)n Simple_repeat Simple_repeat 5 156 0 4 614 405 39 0 0 chr3 3807452 3807503 -155792280 + (CA)n Simple_repeat Simple_repeat 2 52 0 4 614 183 80 0 0 chr3 3809352 3809377 -155790406 + (TTTTTA)n Simple_repeat Simple_repeat 4 28 0 4 614 5147 166 57 27 chr3 3809379 3810406 -155789377 - Lx2B LINE L1 -5 6995 5939 4 614 3216 194 11 0 chr3 3810403 3811032 -155788751 - L1_Mur1 LINE L1 -259 5618 4983 4 614 5865 185 13 11 chr3 3811031 3811998 -155787785 + L1_Mur2 LINE L1 3757 4728 -1149 4 614 190 0 67 0 chr3 3811998 3812028 -155787755 + (CAA)n Simple_repeat Simple_repeat 2 33 0 4 614 5865 185 13 11 chr3 3812028 3812274 -155787509 + L1_Mur2 LINE L1 4729 4972 -905 4 614 199 62 87 58 chr3 3812931 3813034 -155786749 + (TCTA)n Simple_repeat Simple_repeat 1 106 0 4 614 255 81 27 0 chr3 3813308 3813345 -155786438 + MTA_Mm LTR MaLR 1 38 -358 4 614 8060 30 0 0 chr3 3813353 3814312 -155785471 + L1Md_F2 LINE L1 4628 5586 -297 4 614 8001 47 1 3 chr3 3814312 3815309 -155784474 + L1Md_F2 LINE L1 5587 6581 -1 4 614 4057 149 25 1 chr3 3815313 3816232 -155783551 - Lx LINE L1 -663 5991 5044 4 614 223 152 40 80 chr3 3817093 3817143 -155782640 - ID4_ SINE ID -24 59 12 4 614 4052 138 11 7 chr3 3817250 3817321 -155782462 - L1_Mur1 LINE L1 -1002 4884 4810 4 614 438 20 0 0 chr3 3817321 3817372 -155782411 + (TG)n Simple_repeat Simple_repeat 1 51 0 4 614 4052 138 11 7 chr3 3817372 3818006 -155781777 - L1_Mur1 LINE L1 -1077 4809 4177 4 614 3715 146 14 3 chr3 3818007 3818626 -155781157 + Lx3B LINE L1 6346 6971 -2 4 614 21 0 0 0 chr3 3818634 3818655 -155781128 + AT_rich Low_complexity Low_complexity 1 21 0 4 614 6851 124 15 1 chr3 3818852 3820235 -155779548 - L1_Mus3 LINE L1 0 6638 5239 4 614 28558 117 22 10 chr3 3820236 3826420 -155773363 - L1_Mus3 LINE L1 -520 5363 259 4 614 1061 89 0 20 chr3 3826432 3826444 -155773339 - B1_Mm SINE Alu -1 146 136 4 614 387 0 0 0 chr3 3826444 3826487 -155773296 + (TTTTG)n Simple_repeat Simple_repeat 2 44 0 4 614 1061 89 0 20 chr3 3826487 3826623 -155773160 - B1_Mm SINE Alu -12 135 1 4 614 2857 189 92 37 chr3 3826623 3827250 -155772533 - L1VL2 LINE L1 -5665 670 9 4 614 477 202 217 8 chr3 3827266 3827386 -155772397 - L1VL2 LINE L1 -6117 218 74 4 614 22 0 0 0 chr3 3827420 3827442 -155772341 + AT_rich Low_complexity Low_complexity 1 22 0 4 614 5492 86 7 0 chr3 3827590 3828327 -155771456 + L1_Mus1 LINE L1 5826 6567 0 4 614 235 316 0 13 chr3 3828506 3828583 -155771200 + GA-rich Low_complexity Low_complexity 4 79 0 4 614 324 0 0 0 chr3 3830233 3830269 -155769514 + (TAAA)n Simple_repeat Simple_repeat 1 36 0 4 614 266 354 122 8 chr3 3830516 3830647 -155769136 + MIRb SINE MIR 1 146 -122 4 614 361 331 21 62 chr3 3830854 3831047 -155768736 - Tigger7 DNA MER2_type -2172 319 135 4 614 496 305 53 8 chr3 3831139 3831271 -155768512 - ID_B1 SINE B4 -3 221 84 4 614 3427 89 59 12 chr3 3833741 3834230 -155765553 - L1_Mus2 LINE L1 0 6566 6055 4 614 210 156 0 0 chr3 3834565 3834610 -155765173 + T-rich Low_complexity Low_complexity 1 45 0 4 614 930 282 80 17 chr3 3835029 3835328 -155764455 + MTE2b LTR MaLR 8 325 -54 4 614 251 358 41 0 chr3 3835365 3835471 -155764312 - B1F SINE Alu 0 120 6 4 614 405 0 0 0 chr3 3836705 3836750 -155763033 + (TC)n Simple_repeat Simple_repeat 1 45 0 4 614 4295 132 52 6 chr3 3836754 3837472 -155762311 - Lx LINE L1 -5 6649 5899 4 614 5598 180 11 3 chr3 3837472 3838538 -155761245 - L1_Mur2 LINE L1 -641 5236 4162 4 614 619 253 20 65 chr3 3838743 3838942 -155760841 - B3A SINE B2 -8 190 1 4 614 38395 39 2 6 chr3 3839442 3845636 -155754147 - L1Md_A LINE L1 -1 6581 422 4 614 24 53 0 0 chr3 3846489 3846527 -155753256 + AT_rich Low_complexity Low_complexity 1 38 0 4 614 2968 135 8 10 chr3 3848111 3848598 -155751185 - L1_Mus3 LINE L1 0 6638 6153 4 614 637 24 0 0 chr3 3849188 3849270 -155750513 - L1Md_T LINE L1 0 6582 6501 4 614 25 0 0 0 chr3 3849563 3849588 -155750195 + AT_rich Low_complexity Low_complexity 1 25 0 4 614 361 351 78 16 chr3 3850546 3850737 -155749046 + MIRb SINE MIR 26 228 -40 4 614 414 0 0 0 chr3 3850905 3850951 -155748832 + (TA)n Simple_repeat Simple_repeat 2 47 0 4 614 291 342 49 16 chr3 3851011 3851133 -155748650 - B1F SINE Alu -6 143 18 4 614 1218 193 16 131 chr3 3851284 3851666 -155748117 + Lx7 LINE L1 7359 7696 0 4 614 1426 265 102 47 chr3 3851672 3852270 -155747513 + Lx7 LINE L1 7049 7679 -17 4 614 308 288 8 99 chr3 3853049 3853105 -155746678 + RMER15 LTR ERVL 442 486 -89 4 614 207 0 0 0 chr3 3853105 3853128 -155746655 + (TG)n Simple_repeat Simple_repeat 2 24 0 4 614 308 288 8 99 chr3 3853128 3853202 -155746581 + RMER15 LTR ERVL 487 559 -16 4 614 1078 94 25 0 chr3 3854406 3854566 -155745217 - B2_Mm2 SINE B2 -9 186 23 4 614 1156 72 0 18 chr3 3854738 3854908 -155744875 + (GAAA)n Simple_repeat Simple_repeat 2 168 0 4 614 6292 159 7 2 chr3 3854995 3856267 -155743516 - Lx LINE L1 -647 6007 4732 4 614 3506 167 29 2 chr3 3856274 3856891 -155742892 + Lx2 LINE L1 6013 6646 -351 4 614 1001 189 73 14 chr3 3856879 3857099 -155742684 + Lx2 LINE L1 6765 6997 0 4 614 3757 170 43 54 chr3 3857102 3857917 -155741866 - L1_Mm LINE L1 -651 5232 4427 4 614 38278 40 3 6 chr3 3857915 3864142 -155735641 - L1Md_T LINE L1 0 6582 377 4 614 4599 143 43 4 chr3 3864142 3864972 -155734811 - L1_Mm LINE L1 -1446 4437 3575 4 614 363 200 0 0 chr3 3864970 3865045 -155734738 + L1_Mur1 LINE L1 5215 5289 -597 4 614 653 161 32 9 chr3 3865064 3865236 -155734547 + L1_Mus3 LINE L1 5247 5423 -463 4 614 2316 135 44 50 chr3 3865236 3865712 -155734071 + IAPLTR2_Mm LTR ERVK 1 473 -2 4 614 5076 61 6 15 chr3 3865712 3866378 -155733405 + IAPEz-int LTR ERVK 3 662 -5819 4 614 442 66 0 32 chr3 3866378 3866441 -155733342 + IAPEz-int LTR ERVK 1359 1419 -5062 4 614 1846 111 4 4 chr3 3866430 3866692 -155733091 + IAPEz-int LTR ERVK 2236 2497 -5183 4 614 914 81 24 0 chr3 3866689 3866812 -155732971 + IAPEz-int LTR ERVK 4785 4910 -2770 4 614 20967 15 2 0 chr3 3866814 3869165 -155730618 + IAPEz-int LTR ERVK 4123 6477 -4 4 614 2266 141 44 50 chr3 3869169 3869647 -155730136 + IAPLTR2_Mm LTR ERVK 1 475 0 4 614 6664 131 16 0 chr3 3869647 3870850 -155728933 + L1_Mus3 LINE L1 5410 6638 0 4 614 251 259 0 17 chr3 3870857 3870916 -155728867 - RMER1C Other Other -214 1128 1071 4 614 214 193 53 0 chr3 3871725 3871782 -155728001 + (TA)n Simple_repeat Simple_repeat 2 61 0 4 614 368 127 85 37 chr3 3871814 3871896 -155727887 + RLTR25B LTR ERVK 424 509 -519 4 614 809 40 0 0 chr3 3871833 3871933 -155727850 + B1_Mus2 SINE Alu 42 141 -6 4 614 600 50 0 0 chr3 3871934 3872014 -155727769 + (CAAAC)n Simple_repeat Simple_repeat 5 84 0 4 614 534 284 43 128 chr3 3872039 3872193 -155727590 - B3A SINE B2 -1 215 65 4 614 252 0 0 0 chr3 3872193 3872221 -155727562 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 4 614 534 285 36 113 chr3 3872221 3872300 -155727483 - B3A SINE B2 -132 66 2 4 614 24 67 0 0 chr3 3872503 3872548 -155727235 + AT_rich Low_complexity Low_complexity 1 45 0 4 614 180 0 0 0 chr3 3872555 3872575 -155727208 + (TTTTA)n Simple_repeat Simple_repeat 3 22 0 4 614 3044 118 28 2 chr3 3872631 3873099 -155726684 - Lx LINE L1 0 6654 6175 4 614 24 67 0 0 chr3 3873137 3873182 -155726601 + AT_rich Low_complexity Low_complexity 1 45 0 4 614 210 268 143 0 chr3 3873264 3873320 -155726463 - RSINE1 SINE B4 -91 74 11 4 614 603 316 24 5 chr3 3873482 3873689 -155726094 - B3 SINE B2 -1 215 5 4 614 238 286 0 28 chr3 3873711 3873783 -155726000 - ID_B1 SINE B4 -48 176 107 4 614 300 127 0 0 chr3 3873942 3873997 -155725786 + (TTCA)n Simple_repeat Simple_repeat 3 57 0 4 614 665 266 49 29 chr3 3874000 3874245 -155725538 - Lx6 LINE L1 -43 7417 7180 4 614 322 230 0 84 chr3 3874286 3874381 -155725402 + BC1_Mm scRNA scRNA 1 87 -65 4 614 3156 246 91 42 chr3 3874630 3875651 -155724132 + Lx5 LINE L1 5911 6981 -69 4 614 297 0 0 0 chr3 3876696 3876729 -155723054 + (TG)n Simple_repeat Simple_repeat 2 34 0 4 614 2099 184 45 80 chr3 3878882 3879097 -155720686 + Lx LINE L1 6158 6374 -280 4 614 399 21 0 0 chr3 3879097 3879145 -155720638 + (CAAAA)n Simple_repeat Simple_repeat 2 49 0 4 614 4290 114 0 17 chr3 3879145 3879787 -155719996 + L1Md_F2 LINE L1 5935 6565 -17 4 614 2099 184 45 80 chr3 3879787 3879829 -155719954 + Lx LINE L1 6375 6382 -272 4 614 207 0 0 0 chr3 3879829 3879852 -155719931 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 4 614 2099 184 45 80 chr3 3879852 3880081 -155719702 + Lx LINE L1 6383 6627 -27 4 614 274 151 14 14 chr3 3880267 3880341 -155719442 + (TA)n Simple_repeat Simple_repeat 1 74 0 4 614 362 53 0 35 chr3 3880813 3880871 -155718912 + (TAA)n Simple_repeat Simple_repeat 2 57 0 4 614 569 321 40 13 chr3 3881076 3881300 -155718483 + Lx8 LINE L1 7080 7309 -164 4 614 35 41 0 0 chr3 3881492 3881541 -155718242 + AT_rich Low_complexity Low_complexity 1 49 0 4 614 233 91 0 43 chr3 3881622 3881668 -155718115 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 4 614 477 0 0 0 chr3 3881780 3881833 -155717950 + (CA)n Simple_repeat Simple_repeat 2 54 0 4 614 259 118 35 23 chr3 3881860 3881947 -155717836 + A-rich Low_complexity Low_complexity 5 92 0 4 614 290 230 69 38 chr3 3882132 3882263 -155717520 - Lx7 LINE L1 -150 7546 7412 4 614 236 269 231 0 chr3 3882263 3882371 -155717412 + Lx6 LINE L1 7299 7431 -29 4 614 503 302 28 51 chr3 3882387 3882565 -155717218 - Lx6 LINE L1 -309 7151 6978 4 614 33085 86 2 7 chr3 3882595 3888053 -155711730 - L1Md_F2 LINE L1 -12 6570 1141 4 614 5962 235 54 52 chr3 3888054 3890799 -155708984 - Lx7 LINE L1 -777 6919 4143 4 614 2758 213 85 88 chr3 3890798 3892009 -155707774 - Lx7 LINE L1 -2031 3849 2642 4 614 1802 241 80 51 chr3 3892011 3892658 -155707125 - RMER6C LTR ERVK 0 690 25 4 614 886 118 0 22 chr3 3892656 3892794 -155706989 + B1_Mm SINE Alu 13 147 0 5 614 4776 206 54 32 chr3 3892825 3893408 -155706375 - Lx7 LINE L1 -3241 2639 2057 4 614 204 97 0 0 chr3 3893408 3893439 -155706344 + (TG)n Simple_repeat Simple_repeat 1 31 0 5 614 4776 206 54 32 chr3 3893439 3893828 -155705955 - Lx7 LINE L1 -3824 2056 1650 4 614 1742 143 119 35 chr3 3893828 3894205 -155705578 + RLTR9E LTR ERVK 1 409 0 5 614 4776 229 52 81 chr3 3894205 3895225 -155704558 - Lx7 LINE L1 -4231 1649 666 4 614 435 38 0 0 chr3 3895225 3895278 -155704505 + (TC)n Simple_repeat Simple_repeat 1 53 0 5 614 5199 112 44 1 chr3 3895279 3896075 -155703708 - Lx3_Mus LINE L1 -15 6994 6165 5 614 2042 246 50 117 chr3 3896075 3896199 -155703584 - Lx7 LINE L1 -7063 665 583 4 614 1907 135 19 12 chr3 3896199 3896522 -155703261 + Lx LINE L1 6329 6653 -1 5 614 2042 246 50 117 chr3 3896522 3896745 -155703038 - Lx7 LINE L1 -7146 582 344 4 614 10942 201 30 121 chr3 3897192 3897862 -155701921 + L1_Mus2 LINE L1 1922 2595 -3288 5 614 3458 30 0 0 chr3 3897862 3898257 -155701526 - MTA_Mm LTR MaLR 0 396 2 5 614 10942 201 30 121 chr3 3898257 3899126 -155700657 + L1_Mus2 LINE L1 2596 3477 -2406 5 614 2387 93 0 0 chr3 3899126 3899437 -155700346 + RLTR10E LTR ERVK 1 311 0 5 614 10942 201 30 121 chr3 3899437 3900954 -155698829 + L1_Mus2 LINE L1 3478 4619 -1264 5 614 2403 87 0 3 chr3 3900954 3901266 -155698517 + RLTR10E LTR ERVK 1 311 0 5 614 10942 157 35 64 chr3 3901266 3903227 -155696556 + L1_Mus2 LINE L1 4620 6563 -3 5 614 252 0 0 0 chr3 3903643 3903671 -155696112 + (TG)n Simple_repeat Simple_repeat 1 28 0 5 614 1058 97 21 0 chr3 3904128 3904273 -155695510 - B1_Mus1 SINE Alu 0 148 1 5 614 194 378 0 13 chr3 3905159 3905234 -155694549 - L2b LINE L2 -220 3155 3082 5 614 351 220 104 52 chr3 3905465 3905580 -155694203 + L1VL1 LINE L1 4 124 -6298 5 614 198 0 0 0 chr3 3905581 3905603 -155694180 + (A)n Simple_repeat Simple_repeat 1 22 0 5 614 424 87 0 42 chr3 3905619 3905691 -155694092 + L1_Mus2 LINE L1 6498 6566 0 5 614 265 152 38 57 chr3 3906095 3906200 -155693583 + (CATATA)n Simple_repeat Simple_repeat 1 103 0 5 614 264 59 0 0 chr3 3906701 3906735 -155693048 + (T)n Simple_repeat Simple_repeat 1 34 0 5 614 180 0 0 0 chr3 3906840 3906860 -155692923 + (TTG)n Simple_repeat Simple_repeat 2 21 0 5 614 431 289 70 0 chr3 3907419 3907533 -155692250 - B3 SINE B2 -93 123 2 5 614 252 86 0 0 chr3 3907679 3907714 -155692069 + (CATATA)n Simple_repeat Simple_repeat 2 36 0 5 614 53 49 0 0 chr3 3907742 3907823 -155691960 + AT_rich Low_complexity Low_complexity 1 81 0 5 614 192 77 0 0 chr3 3907830 3907856 -155691927 + (A)n Simple_repeat Simple_repeat 1 26 0 5 614 291 222 0 0 chr3 3907946 3908027 -155691756 + (TA)n Simple_repeat Simple_repeat 1 81 0 5 614 1964 138 31 3 chr3 3908160 3908486 -155691297 - L1_Mus3 LINE L1 -2 6636 6302 5 614 9747 133 66 1 chr3 3908491 3910275 -155689508 - L1_Mm LINE L1 -521 5362 3464 5 614 2879 25 0 0 chr3 3910275 3910601 -155689182 - IAPLTR3 LTR ERVK 0 326 1 5 614 12206 26 16 0 chr3 3910601 3912075 -155687708 - IAPLTR3-int LTR ERVK -20 6801 5304 5 614 10924 53 9 40 chr3 3912073 3913592 -155686191 - IAPLTR3-int LTR ERVK -5349 1472 1 5 614 2929 15 0 0 chr3 3913592 3913918 -155685865 - IAPLTR3 LTR ERVK 0 326 1 5 614 9773 133 9 22 chr3 3913919 3915761 -155684022 - MusHAL1 LINE L1 -447 2265 448 5 614 3133 135 223 3 chr3 3915752 3916389 -155683394 - L1VL1 LINE L1 -5617 805 29 5 614 1184 68 0 0 chr3 3916417 3916564 -155683219 - B1_Mus2 SINE Alu 0 147 1 5 614 396 0 0 0 chr3 3916877 3916921 -155682862 + (TG)n Simple_repeat Simple_repeat 1 44 0 5 614 2922 132 33 2 chr3 3918693 3919177 -155680606 + Lx3B LINE L1 6135 6633 -340 5 614 808 161 71 0 chr3 3919177 3919332 -155680451 + Lx3B LINE L1 6808 6973 0 5 614 1415 215 109 43 chr3 3919352 3919735 -155680048 + RLTR20B2 LTR ERVK 148 528 -32 5 614 303 28 0 0 chr3 3919868 3919904 -155679879 + (TG)n Simple_repeat Simple_repeat 2 37 0 5 614 423 0 0 0 chr3 3919904 3919950 -155679833 + (TA)n Simple_repeat Simple_repeat 2 48 0 5 614 4473 134 74 7 chr3 3919957 3920715 -155679068 + RMER17D2 LTR ERVK 1 809 0 5 614 1390 40 0 0 chr3 3920745 3920919 -155678864 + L1Md_F2 LINE L1 6397 6570 -12 5 614 504 188 0 0 chr3 3921859 3921955 -155677828 + L1VL2 LINE L1 304 399 -5936 5 614 14338 192 24 32 chr3 3921972 3926360 -155673423 + Lx2 LINE L1 301 4647 -1239 5 614 2730 32 0 0 chr3 3926357 3926697 -155673086 - L1Md_T LINE L1 -604 5978 5639 5 614 5243 35 0 0 chr3 3926697 3927317 -155672466 + L1Md_T LINE L1 5963 6582 0 5 614 804 171 16 21 chr3 3927335 3927526 -155672257 + Lx2 LINE L1 4631 4820 -1066 5 614 3563 187 10 1 chr3 3928238 3928968 -155670815 + L1_Mur2 LINE L1 4635 5370 -507 5 76 36138 47 1 3 chr3 3928989 3935649 -155664134 - L1Md_T LINE L1 0 6585 1 5 615 3381 164 28 11 chr3 3935651 3936602 -155663181 + Lx2 LINE L1 5367 6323 -674 5 615 2687 82 13 13 chr3 3936605 3936987 -155662796 + MTB LTR MaLR 1 382 -18 5 615 3313 183 37 11 chr3 3936992 3937531 -155662252 + Lx2 LINE L1 6327 6887 -110 5 615 4089 40 2 0 chr3 3937531 3938012 -155661771 + LTRIS_Mm LTR ERV1 1 482 0 5 615 3313 183 37 11 chr3 3938012 3938125 -155661658 + Lx2 LINE L1 6888 6996 -1 5 615 29 47 0 0 chr3 3938831 3938874 -155660909 + AT_rich Low_complexity Low_complexity 1 43 0 5 615 777 216 7 0 chr3 3938896 3939049 -155660734 - RLTR33 LTR ERVK 0 678 525 5 615 24 0 0 0 chr3 3939214 3939238 -155660545 + AT_rich Low_complexity Low_complexity 1 24 0 5 615 382 257 29 0 chr3 3940169 3940274 -155659509 - ORR1A3 LTR MaLR -218 108 1 5 615 237 398 28 0 chr3 3940422 3940530 -155659253 + RSINE1 SINE B4 41 151 -14 5 615 449 401 80 16 chr3 3940803 3941054 -155658729 - B4A SINE B4 -10 282 16 5 615 1724 86 29 0 chr3 3941248 3941492 -155658291 - L1_Mus1 LINE L1 -1 6566 6316 5 615 254 289 63 38 chr3 3941492 3941650 -155658133 + L1M4 LINE L1 4620 4781 -1365 5 615 24 32 0 0 chr3 3941783 3941814 -155657969 + AT_rich Low_complexity Low_complexity 1 31 0 5 615 283 243 63 0 chr3 3941818 3941929 -155657854 - Lx7 LINE L1 -2 7694 7577 5 615 767 144 119 0 chr3 3942043 3942202 -155657581 - ORR1A2 LTR MaLR 0 327 150 5 615 1904 268 59 12 chr3 3942202 3942621 -155657162 + RLTR20C LTR ERVK 1 432 -102 5 615 603 94 0 0 chr3 3942621 3942717 -155657066 + (TG)n Simple_repeat Simple_repeat 2 97 0 5 615 1904 268 59 12 chr3 3942717 3942807 -155656976 + RLTR20C LTR ERVK 433 533 -1 5 615 730 247 0 6 chr3 3942807 3942982 -155656801 - ORR1A2 LTR MaLR -172 174 1 5 615 802 289 75 97 chr3 3943097 3943457 -155656326 + MTE2b LTR MaLR 24 375 -4 5 615 725 299 14 19 chr3 3943516 3943731 -155656052 + MTE-int LTR MaLR 236 449 -1131 5 615 530 353 39 10 chr3 3943732 3943938 -155655845 + MTEa LTR MaLR 168 379 0 5 615 27 62 0 0 chr3 3944310 3944358 -155655425 + AT_rich Low_complexity Low_complexity 1 48 0 5 615 302 326 36 21 chr3 3944576 3944692 -155655091 + PB1D7 SINE Alu 3 119 -1 5 615 30 59 0 0 chr3 3944761 3944812 -155654971 + AT_rich Low_complexity Low_complexity 1 51 0 5 615 1106 55 14 7 chr3 3946381 3946528 -155653255 - B1_Mus1 SINE Alu 0 148 1 5 615 213 152 0 21 chr3 3946596 3946643 -155653140 + T-rich Low_complexity Low_complexity 3 48 0 5 615 257 345 108 8 chr3 3947416 3947536 -155652247 + LTR33 LTR ERVL 47 178 -337 5 615 25 75 0 0 chr3 3948394 3948447 -155651336 + AT_rich Low_complexity Low_complexity 1 53 0 5 615 288 0 0 0 chr3 3952141 3952173 -155647610 + (TG)n Simple_repeat Simple_repeat 1 32 0 5 615 37 23 0 0 chr3 3952378 3952422 -155647361 + AT_rich Low_complexity Low_complexity 1 44 0 5 615 495 95 0 0 chr3 3953269 3953343 -155646440 + (TA)n Simple_repeat Simple_repeat 2 75 0 5 615 225 108 0 0 chr3 3953750 3953787 -155645996 + (A)n Simple_repeat Simple_repeat 1 37 0 5 615 4532 129 74 11 chr3 3953868 3954627 -155645156 + Lx LINE L1 5840 6646 -8 5 615 675 156 7 133 chr3 3954964 3955114 -155644669 + ORR1A2 LTR MaLR 21 170 -176 5 615 423 0 0 0 chr3 3955114 3955161 -155644622 + (TG)n Simple_repeat Simple_repeat 2 48 0 5 615 603 280 17 17 chr3 3955161 3955188 -155644595 + ORR1A2 LTR MaLR 171 198 -148 5 615 656 338 159 69 chr3 3955471 3956036 -155643747 - MLT1E1 LTR MaLR -34 620 5 5 615 22 56 0 0 chr3 3956460 3956496 -155643287 + AT_rich Low_complexity Low_complexity 1 36 0 5 615 215 367 112 18 chr3 3957121 3957290 -155642493 + L2 LINE L2 2619 2803 -616 5 615 1221 98 0 0 chr3 3957977 3958182 -155641601 + (TCTA)n Simple_repeat Simple_repeat 1 205 0 5 615 8767 141 42 10 chr3 3958574 3960672 -155639111 - L1_Mus3 LINE L1 -1 6637 4392 5 615 1018 216 47 17 chr3 3960793 3961028 -155638755 + MTD LTR MaLR 170 411 -8 5 615 2761 92 35 8 chr3 3961123 3961519 -155638264 - RLTR9E LTR ERVK -2 407 1 5 615 413 118 25 50 chr3 3961519 3961599 -155638184 - ETnERV2-int LTR ERVK 0 7406 7329 5 615 16124 108 19 30 chr3 3961805 3962187 -155637596 - ETnERV2-int LTR ERVK -977 6429 6103 5 615 2726 68 143 139 chr3 3962187 3962697 -155637086 + RLTR1B LTR ERV1 1 512 0 5 615 16124 108 19 30 chr3 3962697 3964305 -155635478 - ETnERV2-int LTR ERVK -1304 6102 4480 5 615 207 0 0 0 chr3 3964305 3964328 -155635455 + (TA)n Simple_repeat Simple_repeat 1 23 0 5 615 16124 159 31 35 chr3 3964328 3964840 -155634943 - ETnERV2-int LTR ERVK -2927 4479 4080 5 615 7044 210 43 19 chr3 3964826 3966330 -155633453 - ETnERV-int LTR ERVK -1770 1544 6 5 615 1030 109 32 19 chr3 3966330 3966527 -155633256 - RLTR9E LTR ERVK -242 195 1 5 615 205 70 0 65 chr3 3966657 3966703 -155633080 + (TATAA)n Simple_repeat Simple_repeat 5 47 0 5 615 29783 118 34 8 chr3 3966760 3968352 -155631431 + L1Md_F2 LINE L1 330 1974 -3909 5 615 306 67 0 0 chr3 3968352 3968397 -155631386 + (CAAA)n Simple_repeat Simple_repeat 4 48 0 5 615 29783 96 6 7 chr3 3968397 3969916 -155629867 + L1Md_F2 LINE L1 1975 3478 -2405 5 615 180 0 0 0 chr3 3969916 3969936 -155629847 + (CAA)n Simple_repeat Simple_repeat 2 21 0 5 615 29783 96 6 7 chr3 3969936 3972027 -155627756 + L1Md_F2 LINE L1 3479 5574 -309 5 615 7215 74 13 6 chr3 3972031 3973010 -155626773 + L1Md_F2 LINE L1 5587 6572 -10 5 615 342 316 29 58 chr3 3973542 3973750 -155626033 - L1M2 LINE L1 -1581 4562 4361 5 615 459 0 0 0 chr3 3973784 3973835 -155625948 + (CA)n Simple_repeat Simple_repeat 2 52 0 5 615 234 91 0 0 chr3 3974374 3974407 -155625376 + (CAA)n Simple_repeat Simple_repeat 2 34 0 5 615 6126 122 23 13 chr3 3974410 3975554 -155624229 - L1_Mus4 LINE L1 -124 6512 5356 5 615 558 82 10 10 chr3 3975554 3975652 -155624131 - L1_Mus3 LINE L1 -2 6636 6539 5 615 3194 158 29 63 chr3 3975652 3975802 -155623981 - L1_Mus4 LINE L1 -528 5355 5224 5 615 24 77 0 0 chr3 3976275 3976327 -155623456 + AT_rich Low_complexity Low_complexity 1 52 0 5 615 2694 213 50 60 chr3 3977146 3978010 -155621773 + RLTR13A LTR ERVK 1 855 0 5 615 2475 166 4 9 chr3 3978244 3978705 -155621078 - L1_Mur2 LINE L1 0 5877 5399 5 615 783 201 82 23 chr3 3978653 3978735 -155621048 + Lx7 LINE L1 7456 7548 -148 5 615 399 73 0 0 chr3 3978735 3978790 -155620993 + (TTA)n Simple_repeat Simple_repeat 3 57 0 5 615 783 201 82 23 chr3 3978790 3978926 -155620857 + Lx7 LINE L1 7549 7687 -9 5 615 955 299 37 25 chr3 3978936 3979262 -155620521 - Lx6 LINE L1 -33 7427 7098 5 615 243 239 14 0 chr3 3979258 3979329 -155620454 + Lx LINE L1 6570 6641 -13 6 615 579 168 0 40 chr3 3979334 3979458 -155620325 + L1_Mur2 LINE L1 5289 5407 -470 6 615 2927 197 8 0 chr3 3979443 3980031 -155619752 - L1_Mm LINE L1 -309 5574 4982 6 615 1244 147 24 14 chr3 3979998 3980433 -155619350 - L1Md_F LINE L1 -2220 1597 1395 6 615 401 298 54 51 chr3 3980427 3980704 -155619079 - L1Md_F LINE L1 -3067 751 389 6 615 3170 172 7 0 chr3 3980726 3981267 -155618516 - L1VL4 LINE L1 -5700 602 58 6 615 369 245 29 0 chr3 3981273 3981375 -155618408 - Lx6 LINE L1 -705 6755 6651 6 615 1496 261 115 18 chr3 3981376 3981871 -155617912 - RLTR1 LTR ERV1 0 624 82 6 615 2778 261 53 25 chr3 3981916 3982547 -155617236 - Lx6 LINE L1 -807 6653 6019 6 615 348 111 0 0 chr3 3982547 3982601 -155617182 + (TA)n Simple_repeat Simple_repeat 2 55 0 6 615 2778 261 53 25 chr3 3982601 3982818 -155616965 - Lx6 LINE L1 -1442 6018 5783 6 615 252 0 0 0 chr3 3982819 3982847 -155616936 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 6 615 3105 217 71 1 chr3 3982868 3983625 -155616158 - Lx6 LINE L1 -95 5785 4976 6 615 1456 208 37 3 chr3 3983635 3983983 -155615800 - Lx6 LINE L1 -1739 4141 3782 6 615 213 39 0 0 chr3 3984269 3984295 -155615488 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 6 615 560 350 30 19 chr3 3985279 3985550 -155614233 + Lx7 LINE L1 7039 7312 -384 6 615 768 99 0 0 chr3 3985558 3985669 -155614114 + (TA)n Simple_repeat Simple_repeat 2 112 0 6 615 324 284 93 52 chr3 3985669 3985851 -155613932 + Lx7 LINE L1 7495 7684 -12 6 615 21 0 0 0 chr3 3986347 3986368 -155613415 + AT_rich Low_complexity Low_complexity 1 21 0 6 615 21 0 0 0 chr3 3987009 3987030 -155612753 + AT_rich Low_complexity Low_complexity 1 21 0 6 615 26 30 0 0 chr3 3987173 3987206 -155612577 + AT_rich Low_complexity Low_complexity 1 33 0 6 615 304 269 176 69 chr3 3987371 3987559 -155612224 + MLT1A1 LTR MaLR 1 208 -200 6 615 253 174 29 0 chr3 3988655 3988724 -155611059 + CT-rich Low_complexity Low_complexity 1 71 0 6 615 24 32 0 0 chr3 3989368 3989399 -155610384 + AT_rich Low_complexity Low_complexity 1 31 0 6 615 231 356 57 20 chr3 3990107 3990294 -155609489 - MIRc SINE MIR -25 243 53 6 615 9856 74 1 3 chr3 3990806 3992101 -155607682 + L1_Mm LINE L1 4446 5737 -146 6 615 1218 95 0 0 chr3 3992300 3992469 -155607314 - L1_Mus1 LINE L1 0 6567 6399 6 615 1131 169 0 0 chr3 3992469 3992664 -155607119 + L1_Mm LINE L1 4576 4770 -1113 6 615 321 225 0 0 chr3 3993578 3993667 -155606116 + T-rich Low_complexity Low_complexity 1 89 0 6 615 635 214 64 0 chr3 3993682 3993822 -155605961 - B1_Mur4 SINE Alu 0 150 2 6 615 2549 90 0 20 chr3 3994204 3994557 -155605226 - ORR1A1 LTR MaLR 0 346 1 6 615 297 0 0 0 chr3 3994917 3994950 -155604833 + (TA)n Simple_repeat Simple_repeat 2 34 0 6 615 349 288 82 18 chr3 3994997 3995167 -155604616 - Charlie5 DNA MER1_type -474 2150 1970 6 615 12967 141 23 9 chr3 3995578 3996959 -155602824 + L1VL4 LINE L1 982 2371 -1543 6 615 2751 52 0 39 chr3 3996959 3997319 -155602464 + ORR1A0 LTR MaLR 1 346 0 6 615 12967 154 20 18 chr3 3997319 3998845 -155600938 + L1VL4 LINE L1 2368 3802 -2075 6 615 5269 72 0 11 chr3 3998845 3999557 -155600226 + L1Md_F2 LINE L1 5877 6580 -2 6 615 12385 199 18 48 chr3 3999557 3999996 -155599787 + L1VL4 LINE L1 3803 4241 -1636 6 615 2503 175 12 120 chr3 4000000 4000667 -155599116 + L1_Mur2 LINE L1 4247 4841 -1036 1 615 394 209 0 9 chr3 4000668 4000774 -155599009 + Lx2 LINE L1 6892 6996 -1 2 615 731 179 0 21 chr3 4000793 4000936 -155598847 + B1_Mur4 SINE Alu 10 149 -1 3 615 249 192 19 0 chr3 4001215 4001267 -155598516 + (TG)n Simple_repeat Simple_repeat 2 54 0 4 615 1102 216 101 93 chr3 4002267 4002644 -155597139 + RMER10B LTR ERVL 19 398 0 5 615 230 269 62 31 chr3 4002819 4002915 -155596868 + RMER20B LTR ERVK 129 227 -400 6 615 535 268 16 39 chr3 4003247 4003375 -155596408 - RMER20B LTR ERVK -502 125 1 7 615 528 256 135 11 chr3 4003376 4003554 -155596229 + RMER20B LTR ERVK 217 416 -211 6 615 1148 57 0 0 chr3 4003841 4003981 -155595802 + B1_Mm SINE Alu 5 144 -3 8 615 3525 33 35 71 chr3 4004031 4004524 -155595259 + IAPLTR2_Mm LTR ERVK 1 475 0 9 615 1108 68 50 119 chr3 4004525 4004726 -155595057 + IAPEz-int LTR ERVK 9 195 -6286 9 615 227 273 0 0 chr3 4004735 4004779 -155595004 + RLTR27 LTR ERVK 232 275 -34 1 615 3844 59 2 18 chr3 4004779 4005282 -155594501 + IAPEz-int LTR ERVK 168 662 -5819 9 615 2663 67 0 3 chr3 4005282 4005625 -155594158 + IAPEz-int LTR ERVK 1359 1700 -4781 9 615 6869 38 2 17 chr3 4005618 4006459 -155593324 + IAPEz-int LTR ERVK 5651 6479 -2 9 615 3570 30 32 71 chr3 4006461 4006955 -155592828 + IAPLTR2_Mm LTR ERVK 1 475 0 9 615 582 167 20 7 chr3 4007067 4007218 -155592565 + (TAGA)n Simple_repeat Simple_repeat 4 156 0 1 615 348 179 0 0 chr3 4007191 4007303 -155592480 + (CAGAGA)n Simple_repeat Simple_repeat 4 115 0 1 615 263 322 24 16 chr3 4007367 4007490 -155592293 - RMER12 LTR ERVK -480 842 719 1 615 186 273 15 29 chr3 4007539 4007607 -155592176 - MIR SINE MIR -79 183 117 1 615 21 71 0 0 chr3 4007881 4007923 -155591860 + AT_rich Low_complexity Low_complexity 1 42 0 1 615 23 0 0 0 chr3 4008413 4008436 -155591347 + AT_rich Low_complexity Low_complexity 1 23 0 1 615 21 0 0 0 chr3 4009650 4009671 -155590112 + AT_rich Low_complexity Low_complexity 1 21 0 1 615 282 29 0 0 chr3 4010489 4010524 -155589259 + (TA)n Simple_repeat Simple_repeat 2 36 0 1 615 259 314 37 28 chr3 4010991 4011099 -155588684 - PB1D9 SINE Alu 0 120 12 1 615 9445 163 7 9 chr3 4013075 4013607 -155586176 + L1_Mm LINE L1 4198 4733 -1150 2 615 476 26 25 38 chr3 4013607 4013687 -155586096 + (CAAA)n Simple_repeat Simple_repeat 2 80 0 2 615 9445 163 7 9 chr3 4013687 4014824 -155584959 + L1_Mm LINE L1 4734 5864 -19 2 615 5564 150 105 22 chr3 4014825 4016070 -155583713 - MusHAL1 LINE L1 -1185 1527 180 2 615 272 353 14 62 chr3 4016264 4016409 -155583374 - RSINE1 SINE B4 -21 144 7 2 615 484 283 14 42 chr3 4016639 4016783 -155583000 - ID_B1 SINE B4 -4 220 81 2 615 370 86 15 40 chr3 4016834 4016902 -155582881 + ORR1A3 LTR MaLR 282 326 0 2 615 2823 57 23 3 chr3 4016902 4017288 -155582495 + ORR1A3-int LTR MaLR 1 394 -1398 2 615 225 94 0 0 chr3 4017288 4017320 -155582463 + (T)n Simple_repeat Simple_repeat 1 32 0 2 615 521 71 0 0 chr3 4017323 4017393 -155582390 - B1_Mus2 SINE Alu -1 146 77 2 615 273 240 64 39 chr3 4017327 4017405 -155582378 - ID_B1 SINE B4 -5 219 140 2 615 3001 41 3 0 chr3 4017406 4017772 -155582011 - L1Md_F3 LINE L1 -14 6570 6204 2 615 3600 83 6 27 chr3 4017772 4017913 -155581870 - RLTR13D5 LTR ERVK -514 509 373 3 615 2880 150 26 165 chr3 4017913 4018785 -155580998 + RMER17A LTR ERVK 1 751 0 3 615 3600 83 6 27 chr3 4018785 4019163 -155580620 - RLTR13D5 LTR ERVK -651 372 1 3 615 5217 151 22 4 chr3 4021870 4023536 -155576247 + L1VL4 LINE L1 2 1698 -1861 3 615 13091 98 3 2 chr3 4023536 4026181 -155573602 + L1Md_F LINE L1 515 3162 -2721 3 615 25286 80 21 1 chr3 4026183 4031126 -155568657 + L1Md_A LINE L1 416 5589 -297 3 615 7263 78 3 16 chr3 4031126 4032132 -155567651 + L1Md_F2 LINE L1 5587 6579 -3 3 615 8024 118 78 30 chr3 4032133 4032359 -155567424 + MusHAL1 LINE L1 841 1094 -1618 3 615 1041 109 0 0 chr3 4032359 4032506 -155567277 + B1_Mm SINE Alu 1 147 0 3 615 8024 118 78 30 chr3 4032506 4033798 -155565985 + MusHAL1 LINE L1 1095 2430 -282 3 615 3162 186 81 18 chr3 4035546 4036254 -155563529 + RMER6A LTR ERVK 3 754 -2 3 615 1346 58 0 0 chr3 4036338 4036511 -155563272 - L1Md_T LINE L1 0 6582 6410 3 615 341 204 122 22 chr3 4036521 4036611 -155563172 - Lx7 LINE L1 -584 7112 7014 4 615 1530 219 55 92 chr3 4036644 4037223 -155562560 - L1_Rod LINE L1 -1268 4579 4022 4 615 870 259 12 63 chr3 4037247 4037499 -155562284 - RLTR42 LTR ERVK 0 239 1 4 615 1578 234 78 5 chr3 4037501 4037883 -155561900 - RLTR42-int LTR ERVK -2 5520 5111 4 615 1072 127 46 0 chr3 4037883 4038056 -155561727 + B2_Mm2 SINE B2 1 181 -14 4 615 3571 188 43 92 chr3 4038151 4039090 -155560693 + L1_Mur2 LINE L1 4802 5694 -183 4 615 1900 195 175 7 chr3 4039093 4039987 -155559796 - RLTR42-int LTR ERVK -437 5085 4041 4 615 6686 137 3 0 chr3 4039991 4041116 -155558667 + L1_Mus3 LINE L1 5510 6637 -1 4 615 1084 101 0 0 chr3 4041116 4041264 -155558519 + B1_Mus1 SINE Alu 1 148 0 4 615 243 146 0 0 chr3 4041264 4041305 -155558478 + (A)n Simple_repeat Simple_repeat 1 41 0 4 615 492 140 11 0 chr3 4041305 4041398 -155558385 - RLTR42-int LTR ERVK -1515 4007 3914 4 615 26354 142 19 6 chr3 4041420 4047438 -155552345 + L1_Mus1 LINE L1 465 6567 0 4 615 7845 164 94 6 chr3 4047451 4049884 -155549899 + L1_Mus3 LINE L1 3961 6638 0 4 615 1158 178 150 88 chr3 4049885 4050250 -155549533 - RLTR42-int LTR ERVK -1600 3922 3519 4 615 1059 103 7 0 chr3 4050250 4050395 -155549388 + B1_Mus1 SINE Alu 3 148 0 5 615 1158 178 150 88 chr3 4050395 4050529 -155549254 - RLTR42-int LTR ERVK -2004 3518 3392 4 615 5117 249 60 41 chr3 4050649 4052297 -155547486 - RLTR42-int LTR ERVK -3799 1723 44 4 615 525 264 148 57 chr3 4052333 4052438 -155547345 - RLTR42 LTR ERVK -10 229 116 4 615 2923 73 24 0 chr3 4052438 4052821 -155546962 - MTA_Mm LTR MaLR -4 392 1 5 615 525 264 148 57 chr3 4052821 4052924 -155546859 - RLTR42 LTR ERVK -124 115 3 4 615 2224 251 65 28 chr3 4052993 4053810 -155545973 - L1_Rod LINE L1 -3248 2599 1728 5 615 18929 96 14 16 chr3 4053794 4057995 -155541788 - L1Md_F2 LINE L1 -3 6579 2382 5 615 731 222 27 0 chr3 4057991 4058176 -155541607 - L1_Rod LINE L1 -6405 1203 1014 5 615 16656 161 72 15 chr3 4058562 4062426 -155537357 + Lx3B LINE L1 3 4646 -1237 5 615 279 0 0 0 chr3 4062426 4062457 -155537326 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 5 615 16656 123 32 12 chr3 4062457 4062810 -155536973 + Lx3B LINE L1 4647 5002 -884 5 615 2527 64 12 0 chr3 4062810 4063138 -155536645 + IAPEY_LTR LTR ERVK 54 385 0 5 76 5783 122 75 22 chr3 4063138 4064143 -155535640 + IAPEY3-int LTR ERVK 1 1058 -6455 5 616 18381 68 11 9 chr3 4064143 4066915 -155532868 + IAPEY3-int LTR ERVK 4788 7513 0 5 616 2485 74 12 0 chr3 4066915 4067241 -155532542 + IAPEY_LTR LTR ERVK 55 384 -1 5 616 6909 155 23 22 chr3 4067243 4068608 -155531175 + Lx3B LINE L1 5011 6386 -587 5 616 1156 55 7 0 chr3 4068608 4068754 -155531029 + B1_Mus1 SINE Alu 2 148 0 5 616 6909 190 10 52 chr3 4068754 4069386 -155530397 + Lx3B LINE L1 6387 6968 -5 5 616 180 0 0 0 chr3 4070547 4070567 -155529216 + (TA)n Simple_repeat Simple_repeat 1 20 0 5 616 362 292 27 92 chr3 4071623 4071808 -155527975 - MTEb LTR MaLR -200 179 7 6 616 21 0 0 0 chr3 4072260 4072281 -155527502 + AT_rich Low_complexity Low_complexity 1 21 0 6 616 306 242 142 15 chr3 4072510 4072644 -155527139 - Charlie5 DNA MER1_type -11 2613 2463 6 616 1022 98 0 40 chr3 4072913 4073062 -155526721 - B1_Mus1 SINE Alu -5 143 1 6 616 10843 158 21 20 chr3 4073260 4075329 -155524454 + L1_Mm LINE L1 2131 4201 -1682 6 616 40169 16 0 7 chr3 4075336 4081527 -155518256 - L1Md_A LINE L1 0 6582 438 6 616 1565 171 10 16 chr3 4081717 4082020 -155517763 - Lx2 LINE L1 -1 6996 6696 6 616 753 152 0 0 chr3 4082025 4082150 -155517633 - L1_Mus4 LINE L1 -649 5987 5863 6 616 2024 174 52 20 chr3 4082150 4082421 -155517362 + L1_Mm LINE L1 5439 5720 -163 6 616 4195 35 0 2 chr3 4082421 4082915 -155516868 - MT2_Mm LTR ERVL 0 493 1 6 616 2024 174 52 20 chr3 4082915 4083043 -155516740 + L1_Mm LINE L1 5721 5851 -32 6 616 4045 183 39 12 chr3 4083049 4084445 -155515338 - L1VL4 LINE L1 -1898 1717 143 6 616 258 182 0 0 chr3 4084530 4084585 -155515198 - L1_Mm LINE L1 -1491 4392 4338 7 616 799 169 0 11 chr3 4084586 4084765 -155515018 - L1_Mus4 LINE L1 0 6636 6460 7 616 1690 144 0 0 chr3 4084765 4085022 -155514761 - L1Md_F LINE L1 -314 5569 5313 7 616 4708 91 45 3 chr3 4085049 4085756 -155514027 - L1Md_F LINE L1 -1435 4448 3712 7 616 25758 5 0 0 chr3 4085756 4089715 -155510068 - L1Md_A LINE L1 -1716 4167 208 7 616 11841 142 99 12 chr3 4089718 4089912 -155509871 - L1Md_F LINE L1 -2227 3656 3483 7 616 308 43 22 0 chr3 4089912 4089958 -155509825 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 7 616 11841 152 86 11 chr3 4089958 4092768 -155507015 - L1Md_F LINE L1 -2401 3482 425 7 616 1906 183 145 1 chr3 4092779 4093353 -155506430 - L1VL4 LINE L1 -795 5351 4573 7 616 13497 122 19 35 chr3 4093350 4094325 -155505458 - L1VL4 LINE L1 -318 3241 2299 7 616 531 0 0 0 chr3 4094325 4094384 -155505399 + (TA)n Simple_repeat Simple_repeat 1 59 0 7 616 13497 124 40 28 chr3 4094384 4096400 -155503383 - L1VL4 LINE L1 -1261 2298 231 7 616 3842 182 113 24 chr3 4096396 4097407 -155502376 - L1VL4 LINE L1 -1531 4346 3354 7 616 1010 314 33 31 chr3 4097447 4097933 -155501850 - L1MB8 LINE L1 -13 6165 5679 7 616 778 182 42 0 chr3 4097947 4098090 -155501693 - B1_Mur4 SINE Alu 0 150 2 7 616 26774 129 8 42 chr3 4098980 4104492 -155495291 - L1_Mus1 LINE L1 0 6567 1260 8 616 3112 39 0 16 chr3 4104492 4104879 -155494904 - L1Md_F3 LINE L1 -14 6570 6190 8 616 26774 203 68 25 chr3 4104879 4105717 -155494066 - L1_Mus1 LINE L1 -4624 1259 382 8 616 1652 199 7 80 chr3 4105727 4106152 -155493631 - L1VL4 LINE L1 -5695 962 569 7 616 22 0 0 0 chr3 4106409 4106431 -155493352 + AT_rich Low_complexity Low_complexity 1 22 0 8 616 252 122 0 0 chr3 4106911 4106952 -155492831 + (TAGA)n Simple_repeat Simple_repeat 4 44 0 8 616 261 389 61 20 chr3 4107212 4107359 -155492424 - RMER15 LTR ERVL -117 458 306 8 616 624 50 0 0 chr3 4108017 4108097 -155491686 + (TG)n Simple_repeat Simple_repeat 1 80 0 8 616 465 339 0 16 chr3 4108132 4108258 -155491525 - RSINE1 SINE B4 -38 127 4 8 616 29 60 0 0 chr3 4108788 4108838 -155490945 + AT_rich Low_complexity Low_complexity 1 50 0 8 616 26750 72 3 13 chr3 4108898 4115058 -155484725 - L1Md_F2 LINE L1 -12 6570 477 8 616 228 35 0 0 chr3 4116150 4116179 -155483604 + (CAAT)n Simple_repeat Simple_repeat 4 32 0 8 616 204 40 0 0 chr3 4116195 4116220 -155483563 + (TAAA)n Simple_repeat Simple_repeat 4 28 0 9 616 23 0 0 0 chr3 4116347 4116370 -155483413 + AT_rich Low_complexity Low_complexity 1 23 0 9 616 263 313 154 23 chr3 4116529 4117043 -155482740 - L1MEc LINE L1 -5295 1105 525 9 616 405 0 0 0 chr3 4117318 4117363 -155482420 + (TCTA)n Simple_repeat Simple_repeat 4 48 0 9 616 3567 110 36 4 chr3 4117363 4117602 -155482181 - L1_Mus3 LINE L1 -8 6630 6386 9 616 420 20 0 0 chr3 4117602 4117651 -155482132 + (TTTTG)n Simple_repeat Simple_repeat 4 52 0 9 616 3567 110 36 4 chr3 4117651 4117959 -155481824 - L1_Mus3 LINE L1 -253 6385 6067 9 616 343 161 0 0 chr3 4117959 4118021 -155481762 + L1_Mur2 LINE L1 4668 4729 -1148 9 616 197 98 24 0 chr3 4118030 4118071 -155481712 + (CAAAAA)n Simple_repeat Simple_repeat 4 45 0 9 616 6757 133 5 2 chr3 4118073 4119373 -155480410 + L1_Mus3 LINE L1 4732 6035 -603 9 616 4579 283 68 40 chr3 4119497 4119675 -155480108 + Lx6 LINE L1 5632 5815 -1645 9 616 207 0 0 0 chr3 4119675 4119698 -155480085 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 1 616 4579 283 68 40 chr3 4119698 4120021 -155479762 + Lx6 LINE L1 5816 6160 -1300 9 616 441 0 0 0 chr3 4120021 4120070 -155479713 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 616 4579 283 68 40 chr3 4120070 4121346 -155478437 + Lx6 LINE L1 6161 7458 -2 9 616 517 354 10 15 chr3 4121650 4121845 -155477938 - B3A SINE B2 -3 195 2 1 616 272 218 0 11 chr3 4122264 4122352 -155477431 + GA-rich Low_complexity Low_complexity 1 87 0 1 616 3910 101 28 2 chr3 4122735 4123309 -155476474 - Lx3_Mus LINE L1 -5 7004 6416 1 616 1670 235 52 132 chr3 4123309 4123908 -155475875 - RMER19C LTR ERVK -60 551 1 1 616 230 209 0 0 chr3 4124231 4124274 -155475509 + B3A SINE B2 1 43 -155 1 616 316 321 163 64 chr3 4124403 4124729 -155475054 + L1MA4 LINE L1 4732 5089 -1054 1 616 198 0 0 0 chr3 4124816 4124838 -155474945 + (CAAAAA)n Simple_repeat Simple_repeat 2 23 0 1 616 305 330 77 40 chr3 4124851 4125201 -155474582 + L1MA4 LINE L1 5295 5657 -643 1 616 1049 240 89 59 chr3 4125389 4125747 -155474036 - ORR1D1 LTR MaLR -1 373 5 1 616 263 278 14 0 chr3 4125861 4125933 -155473850 + L1MA4 LINE L1 5856 5928 -372 1 616 198 254 0 0 chr3 4126813 4126880 -155472903 + (CATATA)n Simple_repeat Simple_repeat 5 71 0 1 616 382 274 52 52 chr3 4126967 4127102 -155472681 + Lx8 LINE L1 6298 6432 -1041 1 616 1001 72 0 7 chr3 4128314 4128454 -155471329 + (GAAA)n Simple_repeat Simple_repeat 2 140 0 1 616 806 231 75 7 chr3 4129327 4129570 -155470213 + Lx5 LINE L1 1004 1255 -6473 1 616 315 0 0 0 chr3 4129570 4129605 -155470178 + (CA)n Simple_repeat Simple_repeat 2 36 0 1 616 806 172 70 0 chr3 4129605 4129676 -155470107 + Lx5 LINE L1 1256 1337 -5749 1 616 234 200 0 0 chr3 4130146 4130186 -155469597 + ID_B1 SINE B4 105 144 -80 1 616 9520 221 180 55 chr3 4130247 4130513 -155469270 + Lx5 LINE L1 1345 1608 -4269 1 616 3131 107 8 40 chr3 4130513 4131095 -155468688 + L1_Mus4 LINE L1 6152 6636 0 1 616 9520 221 180 55 chr3 4131095 4131503 -155468280 + Lx5 LINE L1 1609 2051 -3826 1 616 378 0 0 0 chr3 4131503 4131545 -155468238 + (CA)n Simple_repeat Simple_repeat 2 43 0 1 616 9520 221 180 55 chr3 4131545 4133894 -155465889 + Lx5 LINE L1 2052 4859 -1018 1 616 7653 59 14 10 chr3 4133894 4134885 -155464898 + L1Md_F2 LINE L1 5588 6582 0 1 616 9520 204 133 35 chr3 4134885 4136064 -155463719 + Lx5 LINE L1 4860 6072 -978 1 616 1439 239 25 6 chr3 4136340 4136664 -155463119 + Lx5 LINE L1 6713 7042 -8 1 616 189 0 0 0 chr3 4136972 4136993 -155462790 + (A)n Simple_repeat Simple_repeat 1 21 0 1 616 1415 138 21 8 chr3 4137243 4137484 -155462299 + RLTR13D6 LTR ERVK 1 244 -658 1 616 2335 168 64 11 chr3 4137997 4138478 -155461305 + RLTR13D6 LTR ERVK 247 747 -155 1 616 779 169 68 23 chr3 4138506 4138682 -155461101 + ETnERV3-int LTR ERVK 3 186 -5622 1 616 9436 146 58 16 chr3 4138856 4140644 -155459139 + ETnERV2-int LTR ERVK 175 1932 -5474 1 616 998 92 14 0 chr3 4140644 4140777 -155459006 + B1_Mm SINE Alu 1 135 -12 1 616 181 0 33 33 chr3 4140777 4140807 -155458976 + (TAAAA)n Simple_repeat Simple_repeat 1 30 0 1 616 29808 101 5 1 chr3 4140815 4146016 -155453767 + L1Md_F2 LINE L1 364 5585 -298 1 616 7549 76 1 10 chr3 4146017 4147022 -155452761 + L1Md_F2 LINE L1 5587 6582 0 1 616 5537 177 51 96 chr3 4147022 4148313 -155451470 + ETnERV2-int LTR ERVK 2382 3705 -2103 1 616 300 27 0 0 chr3 4148313 4148350 -155451433 + (GA)n Simple_repeat Simple_repeat 1 37 0 1 616 7577 140 48 61 chr3 4148350 4149999 -155449784 + ETnERV2-int LTR ERVK 2872 6071 -1173 1 616 1598 156 0 0 chr3 4150013 4150269 -155449514 + ETnERV3-int LTR ERVK 5529 5784 -24 1 616 534 179 0 10 chr3 4150279 4150375 -155449408 + RLTR13D6 LTR ERVK 1 95 -807 1 616 1296 203 91 101 chr3 4150377 4150469 -155449314 + RLTR13D6 LTR ERVK 479 562 -340 1 616 2096 104 0 33 chr3 4150469 4150798 -155448985 + L1_Mus1 LINE L1 6250 6567 0 1 616 1296 203 91 101 chr3 4150798 4151133 -155448650 + RLTR13D6 LTR ERVK 563 902 0 1 616 2811 156 68 2 chr3 4151278 4151780 -155448003 + Lx LINE L1 6120 6654 0 1 616 2408 93 6 0 chr3 4151937 4152271 -155447512 + L1_Mus1 LINE L1 6231 6566 -1 1 616 373 107 0 25 chr3 4152275 4152354 -155447429 + L1_Mus3 LINE L1 6525 6631 -7 1 616 360 0 0 0 chr3 4152457 4152497 -155447286 + (TG)n Simple_repeat Simple_repeat 2 41 0 1 616 910 248 36 53 chr3 4152740 4153108 -155446675 - Lx7 LINE L1 -18 7678 7107 1 616 1556 205 125 14 chr3 4153109 4153461 -155446322 + ORR1B1 LTR MaLR 3 393 -1 1 616 369 237 111 26 chr3 4153463 4153580 -155446203 - Lx7 LINE L1 -323 7373 7247 1 616 7870 147 37 8 chr3 4153588 4155755 -155444028 + Lx3B LINE L1 4744 6973 0 1 616 280 245 0 0 chr3 4155795 4155848 -155443935 - Lx7 LINE L1 -455 7241 7189 1 616 3536 68 19 4 chr3 4155848 4156323 -155443460 - RLTR45 LTR ERVK 0 482 1 1 616 7743 41 1 3 chr3 4156323 4157237 -155442546 - RLTR45-int LTR ERVK 0 7244 6333 1 616 2032 97 13 3 chr3 4157237 4157536 -155442247 - RLTR13B1 LTR ERVK -385 508 207 1 616 8015 50 4 7 chr3 4157558 4158569 -155441214 - RLTR45-int LTR ERVK -1172 6072 5065 1 616 3943 77 33 39 chr3 4158562 4159173 -155440610 - RLTR45-int LTR ERVK -3258 3986 3380 1 616 11317 44 56 5 chr3 4159143 4160934 -155438849 - RLTR45-int LTR ERVK -4032 3212 1329 1 616 263 227 43 43 chr3 4161241 4161333 -155438450 - MMTV-int LTR ERVK -4749 2504 2413 1 616 1132 51 0 0 chr3 4161732 4161870 -155437913 - RLTR45-int LTR ERVK -6426 818 681 1 616 4403 64 107 19 chr3 4162168 4162804 -155436979 - RLTR45-int LTR ERVK -6552 692 1 1 616 3492 70 21 4 chr3 4162804 4163278 -155436505 - RLTR45 LTR ERVK 0 482 1 1 616 1678 231 100 9 chr3 4163280 4163699 -155436084 - Lx7 LINE L1 -504 7192 6736 1 616 216 0 0 0 chr3 4164106 4164130 -155435653 + (TG)n Simple_repeat Simple_repeat 2 25 0 1 616 28422 25 0 0 chr3 4164191 4170853 -155428930 - L1Md_T LINE L1 0 6585 1 1 616 24333 161 34 18 chr3 4170854 4176160 -155423623 - L1_Mus2 LINE L1 -18 6548 1151 1 616 32285 95 21 6 chr3 4176154 4182168 -155417615 - L1Md_F2 LINE L1 -2 6580 479 1 616 4591 179 12 47 chr3 4182177 4183109 -155416674 - L1VL1 LINE L1 -5522 900 2 1 616 3635 41 25 19 chr3 4184614 4185086 -155414697 - IAPLTR2_Mm LTR ERVK 0 475 1 1 616 333 0 0 0 chr3 4185897 4185934 -155413849 + (T)n Simple_repeat Simple_repeat 1 37 0 1 616 270 278 0 0 chr3 4186324 4186466 -155413317 + GA-rich Low_complexity Low_complexity 1 142 0 1 616 351 0 0 0 chr3 4186814 4186853 -155412930 + (TTA)n Simple_repeat Simple_repeat 1 39 0 1 616 4061 283 60 16 chr3 4186864 4188200 -155411583 - Lx6 LINE L1 -479 6981 5587 1 616 754 187 7 7 chr3 4188433 4188573 -155411210 + Lx4A LINE L1 6869 7008 -50 1 616 287 0 53 0 chr3 4188590 4188628 -155411155 + (TAAA)n Simple_repeat Simple_repeat 2 41 0 1 616 350 298 74 30 chr3 4188640 4188775 -155411008 + MER76 LTR ERVL 20 160 -531 1 616 235 326 31 143 chr3 4188881 4189042 -155410741 + MER76 LTR ERVL 529 671 -20 1 616 353 349 26 16 chr3 4189067 4189259 -155410524 + MER77 LTR ERVL 399 592 -15 1 616 255 21 41 41 chr3 4189483 4189532 -155410251 + (CAAAAA)n Simple_repeat Simple_repeat 6 54 0 1 616 186 156 0 0 chr3 4189727 4189772 -155410011 + T-rich Low_complexity Low_complexity 1 45 0 1 9 38448 6 0 0 chr3 4190068 4195648 -155404135 + L1Md_A LINE L1 7 5586 -297 1 617 9023 2 0 0 chr3 4195648 4196644 -155403139 + L1Md_A LINE L1 5587 6582 0 1 617 935 321 93 6 chr3 4196960 4197314 -155402469 + MTD LTR MaLR 33 417 -2 1 617 737 273 10 31 chr3 4197663 4197856 -155401927 + ORR1C2 LTR MaLR 191 379 -5 1 617 376 188 62 0 chr3 4197875 4197955 -155401828 - MTB_Mm-int LTR MaLR -1171 87 3 1 617 1765 234 22 15 chr3 4197955 4198358 -155401425 - MTB_Mm LTR MaLR 0 407 2 1 617 960 296 81 32 chr3 4198450 4198917 -155400866 + Lx8 LINE L1 6703 7192 -281 1 617 254 50 25 0 chr3 4198917 4198957 -155400826 + (TTTG)n Simple_repeat Simple_repeat 2 42 0 1 617 3679 263 55 27 chr3 4199653 4200690 -155399093 + Lx9 LINE L1 6381 7446 -198 1 617 21 36 0 0 chr3 4200879 4200907 -155398876 + AT_rich Low_complexity Low_complexity 1 28 0 1 617 430 361 52 75 chr3 4201146 4201508 -155398275 - ORR1E LTR MaLR 0 359 6 1 617 1563 59 0 5 chr3 4202244 4202450 -155397333 + L1Md_F2 LINE L1 6366 6570 -12 1 617 302 296 170 40 chr3 4202601 4202876 -155396907 - MLT1A1 LTR MaLR -1 407 73 1 617 320 133 17 0 chr3 4202876 4202936 -155396847 + (TCTCCC)n Simple_repeat Simple_repeat 1 61 0 1 617 4464 126 66 3 chr3 4202956 4203680 -155396103 - Lx3A LINE L1 -2 6979 6210 1 617 370 183 77 68 chr3 4204742 4204859 -155394924 - RMER15 LTR ERVL -420 155 38 1 617 228 256 24 12 chr3 4204963 4205046 -155394737 + L1M4 LINE L1 5360 5443 -735 1 617 2138 148 43 70 chr3 4205191 4205633 -155394150 + RLTR23 LTR ERV1 1 430 0 1 617 201 255 20 0 chr3 4207465 4207516 -155392267 + CT-rich Low_complexity Low_complexity 1 52 0 1 617 330 45 0 0 chr3 4207519 4207563 -155392220 + (TC)n Simple_repeat Simple_repeat 1 44 0 1 617 423 56 0 0 chr3 4207569 4207623 -155392160 + (TATG)n Simple_repeat Simple_repeat 1 54 0 1 617 320 350 82 49 chr3 4207763 4207946 -155391837 - B4A SINE B4 -95 197 9 1 617 275 67 0 43 chr3 4207956 4208003 -155391780 + (TTTTTG)n Simple_repeat Simple_repeat 2 46 0 1 617 34 24 0 0 chr3 4208193 4208234 -155391549 + AT_rich Low_complexity Low_complexity 1 41 0 1 617 243 0 0 0 chr3 4208843 4208870 -155390913 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 617 3781 166 125 62 chr3 4210361 4211210 -155388573 + RLTR13D6 LTR ERVK 1 902 0 1 617 25 51 0 0 chr3 4211304 4211343 -155388440 + AT_rich Low_complexity Low_complexity 1 39 0 1 617 317 344 22 22 chr3 4211344 4211359 -155388424 + ID_B1 SINE B4 81 214 -10 1 617 431 294 50 0 chr3 4211359 4211478 -155388305 + B1_Mur1 SINE Alu 15 139 -10 1 617 198 167 0 0 chr3 4213187 4213223 -155386560 + T-rich Low_complexity Low_complexity 1 36 0 1 617 6799 187 6 27 chr3 4214246 4214418 -155385365 + Lx2A LINE L1 4502 4665 -1212 1 617 243 0 0 0 chr3 4214418 4214445 -155385338 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 617 7639 175 32 16 chr3 4214445 4216707 -155383076 + Lx2A LINE L1 4666 6968 -40 1 617 300 204 34 11 chr3 4216708 4216797 -155382986 + Lx2A LINE L1 6918 7008 0 1 617 216 0 0 0 chr3 4216893 4216917 -155382866 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 1 617 22 0 0 0 chr3 4219404 4219426 -155380357 + AT_rich Low_complexity Low_complexity 1 22 0 1 617 891 326 19 26 chr3 4219831 4220099 -155379684 - B4 SINE B4 -17 275 10 1 617 1957 118 14 31 chr3 4220102 4220469 -155379314 + RLTR10A LTR ERVK 2 347 -12 1 617 234 0 0 0 chr3 4221221 4221247 -155378536 + (CCTA)n Simple_repeat Simple_repeat 3 28 0 1 617 375 324 82 44 chr3 4222252 4222642 -155377141 + Kanga1b DNA Tc2 374 778 -1 1 617 249 169 136 0 chr3 4223162 4223221 -155376562 + ORR1D1 LTR MaLR 305 371 -3 1 617 294 374 74 6 chr3 4223246 4223421 -155376362 - Lx8 LINE L1 -150 7323 7137 1 617 8626 6 0 0 chr3 4223442 4224402 -155375381 - L1Md_T LINE L1 0 6582 5623 1 617 431 339 0 0 chr3 4224402 4224579 -155375204 - Lx8 LINE L1 -349 7124 6948 1 617 31 68 0 0 chr3 4225283 4225342 -155374441 + AT_rich Low_complexity Low_complexity 1 59 0 1 617 1558 86 5 0 chr3 4225848 4226069 -155373714 - L1_Mus2 LINE L1 0 6566 6345 1 617 557 329 28 14 chr3 4228049 4228262 -155371521 - MLT1C LTR MaLR 0 467 252 1 617 188 34 0 33 chr3 4228631 4228661 -155371122 + (TTAA)n Simple_repeat Simple_repeat 1 29 0 1 617 180 111 0 0 chr3 4229366 4229393 -155370390 + (CAGA)n Simple_repeat Simple_repeat 2 28 0 1 617 2549 228 59 56 chr3 4229825 4230541 -155369242 - RMER6D LTR ERVK -1 719 2 2 617 213 167 0 0 chr3 4230791 4230845 -155368938 + A-rich Low_complexity Low_complexity 6 59 0 2 617 351 44 0 0 chr3 4231095 4231140 -155368643 + (CA)n Simple_repeat Simple_repeat 2 46 0 2 617 306 0 0 0 chr3 4231140 4231173 -155368610 + (GA)n Simple_repeat Simple_repeat 2 35 0 2 617 22884 151 17 11 chr3 4231330 4235939 -155363844 + L1_Mus2 LINE L1 663 5307 -576 2 617 29017 111 9 8 chr3 4235935 4241129 -155358654 + L1Md_F2 LINE L1 387 5586 -297 2 617 6758 110 0 4 chr3 4241130 4242119 -155357664 + L1Md_F2 LINE L1 5588 6572 -10 2 617 5330 104 4 2 chr3 4242121 4243166 -155356617 + L1_Mus2 LINE L1 5277 6323 -243 2 617 6551 161 15 8 chr3 4243163 4244742 -155355041 - Lx LINE L1 -134 6520 4935 2 617 803 149 8 0 chr3 4244742 4244876 -155354907 + B1_Mus1 SINE Alu 2 136 -12 2 617 389 20 0 20 chr3 4244876 4244927 -155354856 + (CAAA)n Simple_repeat Simple_repeat 3 52 0 2 617 6551 195 28 18 chr3 4244927 4245370 -155354413 - Lx LINE L1 -949 4934 4483 2 617 529 174 18 12 chr3 4245372 4245535 -155354248 + (TA)n Simple_repeat Simple_repeat 2 165 0 2 617 28 29 0 0 chr3 4245816 4245851 -155353932 + AT_rich Low_complexity Low_complexity 1 35 0 2 617 1960 215 7 7 chr3 4246945 4247357 -155352426 + Lx LINE L1 6243 6654 0 2 617 1914 170 3 6 chr3 4247623 4247948 -155351835 - ORR1A4 LTR MaLR -5 324 1 2 617 429 104 0 0 chr3 4248368 4248445 -155351338 + (T)n Simple_repeat Simple_repeat 1 77 0 2 617 25 65 0 0 chr3 4249640 4249686 -155350097 + AT_rich Low_complexity Low_complexity 1 46 0 2 617 534 93 0 44 chr3 4250064 4250154 -155349629 - B2_Mm1a SINE B2 0 193 108 2 617 1527 167 136 0 chr3 4250173 4250460 -155349323 - ORR1A3 LTR MaLR 0 326 1 2 617 204 159 23 0 chr3 4250623 4250667 -155349116 + A-rich Low_complexity Low_complexity 2 46 0 2 617 294 106 0 0 chr3 4251951 4251998 -155347785 + (A)n Simple_repeat Simple_repeat 1 47 0 2 617 496 309 27 37 chr3 4252079 4252267 -155347516 + B3A SINE B2 3 188 -10 2 617 371 224 84 5 chr3 4252602 4252716 -155347067 + RMER6C LTR ERVK 3 123 -597 2 617 1183 163 107 24 chr3 4252737 4252989 -155346794 + RMER6C LTR ERVK 418 690 0 2 617 805 190 0 11 chr3 4253374 4253555 -155346228 + A-rich Low_complexity Low_complexity 2 180 0 2 617 2118 241 12 26 chr3 4253581 4254075 -155345708 - RMER1C Other Other -117 1225 739 2 617 262 258 0 0 chr3 4254071 4254133 -155345650 + RMER1C Other Other 665 726 -616 2 617 2009 237 71 15 chr3 4254215 4254818 -155344965 + Lx9 LINE L1 7001 7637 -7 2 617 33519 75 16 3 chr3 4254898 4261025 -155338758 - L1Md_F2 LINE L1 0 6585 275 2 617 1200 292 34 29 chr3 4261098 4261693 -155338090 - L1_Mur3 LINE L1 -3909 1971 1374 2 617 238 229 41 41 chr3 4261716 4261789 -155337994 + L1M2 LINE L1 5188 5260 -883 2 617 291 316 29 29 chr3 4261824 4261964 -155337819 + L1_Mm LINE L1 5389 5528 -355 2 617 428 128 13 0 chr3 4262330 4262408 -155337375 - Lx LINE L1 -9 6645 6567 2 617 6700 51 2 1 chr3 4262408 4263550 -155336233 - L1Md_F2 LINE L1 -386 6196 5053 2 617 2881 71 3 0 chr3 4263550 4263932 -155335851 + L1Md_F2 LINE L1 6200 6582 0 2 617 1190 247 37 31 chr3 4263934 4264260 -155335523 - Lx LINE L1 -70 6584 6257 2 617 515 125 105 4 chr3 4264356 4264457 -155335326 - Lx LINE L1 -401 6253 6141 2 617 2929 250 71 17 chr3 4264747 4265511 -155334272 - Lx5 LINE L1 -3 7047 6243 2 617 6694 154 8 24 chr3 4265512 4267063 -155332720 + L1_Mus3 LINE L1 4514 5970 -668 2 617 474 18 0 0 chr3 4267069 4267124 -155332659 + (TTTA)n Simple_repeat Simple_repeat 3 57 0 2 617 5512 163 35 5 chr3 4267124 4268217 -155331566 - L1_Mm LINE L1 -1656 4227 3102 2 617 2295 214 34 12 chr3 4268212 4268635 -155331148 - L1_Mur2 LINE L1 -426 5451 5014 2 617 222 37 0 0 chr3 4268635 4268662 -155331121 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2 617 2295 214 34 12 chr3 4268662 4268819 -155330964 - L1_Mur2 LINE L1 -864 5013 4858 2 617 27 29 0 0 chr3 4269076 4269110 -155330673 + AT_rich Low_complexity Low_complexity 1 34 0 2 617 971 291 67 36 chr3 4269986 4270596 -155329187 - L1M2 LINE L1 -1139 5004 4376 2 617 1048 282 23 23 chr3 4270652 4271084 -155328699 - Lx9 LINE L1 0 7644 7213 2 617 1054 223 9 14 chr3 4271277 4271491 -155328292 - MTC LTR MaLR -13 408 196 2 617 1412 282 85 12 chr3 4271493 4271999 -155327784 - Lx2B LINE L1 -2 6998 6456 2 617 840 263 35 15 chr3 4271999 4272200 -155327583 - MTC LTR MaLR -214 207 3 2 617 3405 281 44 22 chr3 4272201 4273270 -155326513 - Lx9 LINE L1 -158 7486 6395 2 617 25 31 0 0 chr3 4273295 4273327 -155326456 + AT_rich Low_complexity Low_complexity 1 32 0 2 617 21 0 0 0 chr3 4273550 4273571 -155326212 + AT_rich Low_complexity Low_complexity 1 21 0 2 617 267 47 141 0 chr3 4273862 4273926 -155325857 + T-rich Low_complexity Low_complexity 2 74 0 2 617 1092 86 110 0 chr3 4273931 4274094 -155325689 - L1_Mus1 LINE L1 0 6567 6387 2 617 200 234 77 15 chr3 4274441 4274506 -155325277 + L2c LINE L2 3281 3349 -38 2 617 23 68 0 0 chr3 4276771 4276815 -155322968 + AT_rich Low_complexity Low_complexity 1 44 0 2 617 25 31 0 0 chr3 4277169 4277201 -155322582 + AT_rich Low_complexity Low_complexity 1 32 0 2 617 192 253 13 39 chr3 4278827 4278905 -155320878 + L3 LINE CR1 1200 1275 -3214 2 617 351 44 0 0 chr3 4279537 4279582 -155320201 + (TC)n Simple_repeat Simple_repeat 1 45 0 2 617 216 268 0 0 chr3 4280270 4280326 -155319457 + T-rich Low_complexity Low_complexity 4 59 0 2 617 189 45 42 62 chr3 4280336 4280384 -155319399 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 2 617 22 35 0 0 chr3 4281743 4281772 -155318011 + AT_rich Low_complexity Low_complexity 1 29 0 2 617 606 143 0 0 chr3 4281883 4281988 -155317795 + (TA)n Simple_repeat Simple_repeat 1 105 0 2 617 25 0 0 0 chr3 4282680 4282705 -155317078 + AT_rich Low_complexity Low_complexity 1 25 0 2 617 188 135 0 26 chr3 4284069 4284107 -155315676 + GA-rich Low_complexity Low_complexity 3 39 0 2 617 949 80 14 21 chr3 4284300 4284312 -155315471 - B1_Mus1 SINE Alu -1 147 138 2 617 423 0 0 0 chr3 4284312 4284359 -155315424 + (TTTTG)n Simple_repeat Simple_repeat 3 49 0 2 617 949 80 14 21 chr3 4284359 4284486 -155315297 - B1_Mus1 SINE Alu -11 137 9 2 617 7443 53 33 10 chr3 4284511 4285570 -155314213 + L1Md_F2 LINE L1 5491 6569 -13 2 617 288 384 7 0 chr3 4287212 4287358 -155312425 + MIR SINE MIR 34 180 -82 2 617 18630 24 5 0 chr3 4288356 4290562 -155309221 + L1Md_T LINE L1 3371 5586 -297 2 617 8252 37 3 0 chr3 4290562 4291553 -155308230 + L1Md_T LINE L1 5587 6580 -2 2 617 2782 6 0 0 chr3 4291664 4291978 -155307805 + L1Md_T LINE L1 6269 6582 0 2 617 230 195 0 0 chr3 4292288 4292329 -155307454 - MT2B LTR ERVL -312 289 249 2 617 201 311 56 0 chr3 4292426 4292516 -155307267 - MIR SINE MIR -11 251 157 2 617 6643 84 27 0 chr3 4292594 4293570 -155306213 - L1_Mus1 LINE L1 -71 6496 5497 2 617 272 67 0 62 chr3 4293894 4293958 -155305825 + (GTTTG)n Simple_repeat Simple_repeat 1 60 0 2 617 558 248 104 8 chr3 4294105 4294239 -155305544 - B1_Mus1 SINE Alu 0 148 2 2 617 330 26 0 0 chr3 4294261 4294300 -155305483 + (TTA)n Simple_repeat Simple_repeat 1 39 0 2 617 387 56 0 0 chr3 4294490 4294544 -155305239 + (TCTA)n Simple_repeat Simple_repeat 1 54 0 2 617 360 22 0 22 chr3 4295201 4295247 -155304536 - L1_Mus1 LINE L1 -396 6171 6127 2 617 249 294 25 107 chr3 4295247 4295369 -155304414 + MTEb LTR MaLR 69 180 -199 2 617 243 0 0 0 chr3 4295898 4295925 -155303858 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2 617 382 285 490 11 chr3 4295949 4296122 -155303661 + MTE2a LTR MaLR 12 267 -112 2 617 462 18 0 0 chr3 4296656 4296711 -155303072 + (TC)n Simple_repeat Simple_repeat 2 56 0 2 617 318 26 0 0 chr3 4296711 4296749 -155303034 + (TG)n Simple_repeat Simple_repeat 2 40 0 2 617 9105 191 10 61 chr3 4297164 4298056 -155301727 - L1_Mur2 LINE L1 -785 5092 4300 2 617 207 0 0 0 chr3 4298056 4298079 -155301704 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2 617 9105 191 10 61 chr3 4298079 4299339 -155300444 - L1_Mur2 LINE L1 -1578 4299 3050 2 617 9290 122 13 8 chr3 4299333 4301503 -155298280 - L1_Mus2 LINE L1 0 6566 4385 2 617 2525 132 2 23 chr3 4301499 4301933 -155297850 + L1_Mm LINE L1 3165 3589 -2294 2 617 2133 99 31 0 chr3 4301931 4302253 -155297530 - MusHAL1 LINE L1 -969 1743 1412 2 617 3123 129 8 8 chr3 4302256 4302740 -155297043 - L1_Mm LINE L1 -107 5776 5293 2 617 486 0 0 0 chr3 4302740 4302794 -155296989 + (TA)n Simple_repeat Simple_repeat 1 54 0 2 617 2134 144 41 3 chr3 4302802 4303191 -155296592 - MusHAL1 LINE L1 -1307 1405 1002 2 617 280 189 278 35 chr3 4303185 4303300 -155296483 + Lx2 LINE L1 5074 5216 -670 2 617 185 65 0 31 chr3 4303309 4303341 -155296442 + (TTATA)n Simple_repeat Simple_repeat 1 31 0 2 617 5766 185 25 1 chr3 4303353 4304733 -155295050 + Lx2 LINE L1 5217 6645 -352 2 617 843 168 246 0 chr3 4304722 4304913 -155294870 + Lx LINE L1 6417 6654 0 2 617 3226 29 39 0 chr3 4304980 4305361 -155294422 - MTA_Mm LTR MaLR 0 396 1 2 617 9619 16 0 0 chr3 4305361 4306459 -155293324 - MTA_Mm-int LTR MaLR 0 1098 1 2 617 3249 26 39 0 chr3 4306459 4306840 -155292943 - MTA_Mm LTR MaLR 0 396 1 2 617 217 361 48 0 chr3 4306842 4306925 -155292858 + B4A SINE B4 37 123 -169 2 617 240 35 0 0 chr3 4307012 4307041 -155292742 + (GA)n Simple_repeat Simple_repeat 2 30 0 2 617 931 176 95 28 chr3 4307651 4307862 -155291921 + URR1B DNA MER1_type 1 225 0 2 617 25 51 0 0 chr3 4308336 4308375 -155291408 + AT_rich Low_complexity Low_complexity 1 39 0 2 617 27 29 0 0 chr3 4308661 4308695 -155291088 + AT_rich Low_complexity Low_complexity 1 34 0 2 617 2538 34 6 3 chr3 4309227 4309553 -155290230 + RLTR10 LTR ERVK 1 327 -10 2 617 7948 35 8 0 chr3 4309553 4310510 -155289273 + RLTR10-int LTR ERVK 17 988 -999 2 617 8697 27 1 0 chr3 4310589 4311586 -155288197 + RLTR10-int LTR ERVK 990 1987 0 2 617 2763 26 2 184 chr3 4311586 4312063 -155287720 + RLTR10 LTR ERVK 1 390 0 2 617 180 0 0 0 chr3 4312185 4312205 -155287578 + (CAA)n Simple_repeat Simple_repeat 2 21 0 2 617 2768 92 20 10 chr3 4312444 4312840 -155286943 - MTB LTR MaLR 0 400 1 2 617 2919 135 94 8 chr3 4313444 4313953 -155285830 - Lx3_Mus LINE L1 0 7009 6457 2 617 5512 100 38 9 chr3 4313953 4314999 -155284784 + Lx3_Mus LINE L1 5413 6496 -513 2 617 306 375 54 38 chr3 4317027 4317291 -155282492 + B4 SINE B4 1 292 0 2 617 732 341 44 0 chr3 4317842 4318047 -155281736 - ID_B1 SINE B4 -2 222 9 2 617 334 314 78 0 chr3 4318520 4318622 -155281161 + B4 SINE B4 97 206 -86 3 617 359 328 50 47 chr3 4318859 4319137 -155280646 - Lx8 LINE L1 -4 7469 7191 3 617 435 92 0 0 chr3 4319926 4319991 -155279792 + (TA)n Simple_repeat Simple_repeat 2 66 0 3 617 421 328 9 9 chr3 4321759 4321873 -155277910 + RSINE1 SINE B4 3 116 -49 3 617 9632 182 50 29 chr3 4321883 4323047 -155276736 - L1_Mur2 LINE L1 -609 5268 4071 3 617 493 28 14 14 chr3 4323047 4323119 -155276664 + (GA)n Simple_repeat Simple_repeat 2 73 0 3 617 9632 182 50 29 chr3 4323119 4324116 -155275667 - L1_Mur2 LINE L1 -1807 4070 3063 3 77 6637 176 47 22 chr3 4324723 4326385 -155273398 - Lx3C LINE L1 -6 6970 5274 3 618 9732 165 39 3 chr3 4326376 4328305 -155271478 - Lx3C LINE L1 -2753 3133 1135 3 618 1414 252 17 8 chr3 4328583 4328939 -155270844 - Lx6 LINE L1 -581 6879 6521 3 618 966 320 13 3 chr3 4328947 4329245 -155270538 - Lx6 LINE L1 -1186 6274 5974 3 618 1446 286 45 35 chr3 4329296 4329803 -155269980 + Lx6 LINE L1 6949 7460 0 3 618 6795 102 11 23 chr3 4329795 4331139 -155268644 + L1_Mus2 LINE L1 5188 6524 -42 3 618 3961 95 0 0 chr3 4331157 4331705 -155268078 + L1Md_F2 LINE L1 5039 5586 -297 3 618 7168 81 7 20 chr3 4331705 4332714 -155267069 + L1Md_F2 LINE L1 5587 6582 0 3 618 2835 29 6 0 chr3 4334010 4334354 -155265429 - ORR1A0 LTR MaLR 0 346 1 3 618 556 169 168 0 chr3 4334870 4335002 -155264781 + B2_Mm2 SINE B2 2 165 -51 3 618 22 0 0 0 chr3 4335156 4335178 -155264605 + AT_rich Low_complexity Low_complexity 1 22 0 3 618 215 326 33 44 chr3 4335192 4335282 -155264501 + PB1D10 SINE Alu 13 101 -16 3 618 435 329 39 7 chr3 4335656 4335809 -155263974 + MER82 DNA MER2_type 3 160 -493 3 618 681 346 62 14 chr3 4335831 4336121 -155263662 + MER82 DNA MER2_type 225 528 -125 3 618 2907 181 71 61 chr3 4336131 4336767 -155263016 - RLTR26 LTR ERVK 0 642 1 3 618 212 86 29 0 chr3 4337373 4337408 -155262375 + (TA)n Simple_repeat Simple_repeat 2 37 0 3 618 21 36 0 0 chr3 4337554 4337582 -155262201 + AT_rich Low_complexity Low_complexity 1 28 0 3 618 227 31 0 30 chr3 4338211 4338244 -155261539 + (TC)n Simple_repeat Simple_repeat 1 32 0 3 618 5197 52 1 3 chr3 4338344 4338998 -155260785 - L1Md_F2 LINE L1 0 6582 5930 3 618 1001 34 0 0 chr3 4338998 4339116 -155260667 + 5S rRNA rRNA 2 119 -2 3 618 308 93 53 0 chr3 4339492 4339567 -155260216 + (CAAAA)n Simple_repeat Simple_repeat 2 80 0 3 618 2135 273 20 29 chr3 4339588 4340184 -155259599 + RodERV21-int LTR ERV1 1248 1838 -3153 3 618 256 254 84 99 chr3 4340405 4340536 -155259247 + RMER4B LTR ERVK 350 478 -107 3 618 2479 201 47 2 chr3 4341223 4341712 -155258071 + RLTR11A LTR ERVK 13 523 -5 3 618 198 0 0 0 chr3 4342531 4342553 -155257230 + (TTTA)n Simple_repeat Simple_repeat 1 22 0 3 618 25845 131 30 40 chr3 4342553 4344273 -155255510 - Lx3A LINE L1 -15 6966 5273 3 618 243 0 0 0 chr3 4344273 4344300 -155255483 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 3 618 25845 116 28 20 chr3 4344300 4344951 -155254832 - Lx3A LINE L1 -614 5272 4639 3 618 270 0 0 0 chr3 4344951 4344981 -155254802 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 3 618 25845 116 28 20 chr3 4344981 4346684 -155253099 - Lx3A LINE L1 -1248 4638 2893 3 618 674 23 23 0 chr3 4346684 4346771 -155253012 + (TTCC)n Simple_repeat Simple_repeat 4 92 0 3 618 25845 116 28 20 chr3 4346771 4347725 -155252058 - Lx3A LINE L1 -2994 2892 1974 3 618 270 0 0 0 chr3 4347725 4347755 -155252028 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 3 618 25845 116 28 20 chr3 4347755 4348144 -155251639 - Lx3A LINE L1 -3913 1973 1548 3 618 1496 211 109 39 chr3 4348130 4348717 -155251066 - Lx3A LINE L1 -6301 683 6 3 618 267 272 48 24 chr3 4348715 4348798 -155250985 - Lx9 LINE L1 -351 7293 7209 3 618 246 308 0 0 chr3 4348890 4348981 -155250802 + MER53 DNA hAT 41 131 -62 3 618 676 107 0 18 chr3 4350292 4350406 -155249377 + L1Md_F2 LINE L1 6458 6569 -13 3 618 209 169 0 17 chr3 4350476 4350536 -155249247 + (TA)n Simple_repeat Simple_repeat 1 59 0 3 618 344 227 138 38 chr3 4350544 4350704 -155249079 - RLTR21 LTR ERVK -311 1261 1086 3 618 687 320 35 0 chr3 4350789 4350992 -155248791 + Lx8 LINE L1 7108 7317 -156 3 618 25 0 0 0 chr3 4350999 4351024 -155248759 + AT_rich Low_complexity Low_complexity 1 25 0 3 618 295 294 47 0 chr3 4352474 4352559 -155247224 - PB1D10 SINE Alu -8 109 21 3 618 274 381 21 0 chr3 4352493 4352590 -155247193 - ID_B1 SINE B4 -56 168 70 3 618 238 349 23 53 chr3 4352877 4353010 -155246773 + MTEa LTR MaLR 251 379 0 3 618 21 0 0 0 chr3 4353739 4353760 -155246023 + AT_rich Low_complexity Low_complexity 1 21 0 3 618 278 400 27 0 chr3 4354065 4354175 -155245608 - PB1D7 SINE Alu -5 115 3 3 618 21 57 0 0 chr3 4354468 4354503 -155245280 + AT_rich Low_complexity Low_complexity 1 35 0 3 618 252 0 0 0 chr3 4355015 4355043 -155244740 + (TG)n Simple_repeat Simple_repeat 1 28 0 3 618 420 111 0 0 chr3 4355043 4355106 -155244677 + (CA)n Simple_repeat Simple_repeat 1 63 0 3 618 976 261 191 18 chr3 4355117 4355453 -155244330 + MTD LTR MaLR 8 401 -18 3 618 1124 171 21 13 chr3 4355736 4355973 -155243810 - Lx2 LINE L1 0 6997 6759 3 618 278 365 17 34 chr3 4356191 4356310 -155243473 + RSINE1 SINE B4 8 124 -41 3 618 26 50 0 0 chr3 4359969 4360009 -155239774 + AT_rich Low_complexity Low_complexity 1 40 0 3 618 373 318 34 11 chr3 4361570 4361748 -155238035 - Lx8 LINE L1 -605 6868 6687 3 618 425 327 26 13 chr3 4361771 4361923 -155237860 - Lx8 LINE L1 -841 6632 6479 3 618 295 351 59 13 chr3 4361913 4362066 -155237717 + Lx8 LINE L1 6874 7033 -440 3 618 306 0 0 0 chr3 4362299 4362333 -155237450 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 3 618 310 284 53 0 chr3 4363009 4363104 -155236679 + B1_Mur1 SINE Alu 44 143 -6 3 618 748 122 23 0 chr3 4364226 4364357 -155235426 + (GAAA)n Simple_repeat Simple_repeat 2 135 0 3 618 285 171 21 54 chr3 4366697 4366790 -155232993 + (TATAA)n Simple_repeat Simple_repeat 5 94 0 3 618 2511 80 3 25 chr3 4367114 4367471 -155232312 + L1_Mus1 LINE L1 6219 6567 0 3 618 252 0 0 0 chr3 4367500 4367528 -155232255 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 3 618 225 196 0 0 chr3 4368045 4368096 -155231687 + CT-rich Low_complexity Low_complexity 1 51 0 3 618 6052 155 40 4 chr3 4368096 4369144 -155230639 - Lx LINE L1 -4 6650 5587 3 618 654 154 0 0 chr3 4369148 4369252 -155230531 + RLTR23 LTR ERV1 327 430 0 3 618 232 329 0 0 chr3 4369277 4369347 -155230436 - Lx9 LINE L1 -307 7337 7268 3 618 450 291 102 88 chr3 4369569 4369874 -155229909 - RLTR23 LTR ERV1 -5 425 117 3 618 234 0 0 0 chr3 4369958 4369984 -155229799 + (TTTTA)n Simple_repeat Simple_repeat 1 26 0 3 618 218 95 0 23 chr3 4370406 4370449 -155229334 + (CAAA)n Simple_repeat Simple_repeat 4 45 0 3 618 411 334 26 18 chr3 4370521 4370670 -155229113 - MTD LTR MaLR -144 275 111 3 618 258 32 0 0 chr3 4372943 4372974 -155226809 + (A)n Simple_repeat Simple_repeat 1 31 0 3 618 248 331 56 35 chr3 4373023 4373167 -155226616 - MIRb SINE MIR -72 196 50 3 618 1011 234 47 78 chr3 4374036 4374211 -155225572 - RLTR25B LTR ERVK 0 1028 860 3 618 470 61 15 0 chr3 4374211 4374277 -155225506 + (TG)n Simple_repeat Simple_repeat 2 68 0 3 618 1011 234 47 78 chr3 4374277 4374397 -155225386 - RLTR25B LTR ERVK -169 859 742 3 618 1405 206 166 11 chr3 4374470 4374843 -155224940 - RLTR25A LTR ERVK -152 951 521 3 618 2376 307 90 46 chr3 4374852 4375770 -155224013 + Lx8 LINE L1 6227 7194 -279 3 618 854 141 44 0 chr3 4375770 4375905 -155223878 - B1_Mus1 SINE Alu -7 141 1 3 618 2376 307 90 46 chr3 4375905 4376045 -155223738 + Lx8 LINE L1 7195 7331 -142 3 618 221 98 24 0 chr3 4378274 4378315 -155221468 + (TG)n Simple_repeat Simple_repeat 2 43 0 3 618 21 36 0 0 chr3 4378361 4378389 -155221394 + AT_rich Low_complexity Low_complexity 1 28 0 3 618 857 314 62 14 chr3 4379351 4379706 -155220077 + Lx8 LINE L1 7073 7444 -29 3 618 21 0 0 0 chr3 4379719 4379740 -155220043 + AT_rich Low_complexity Low_complexity 1 21 0 3 618 21 36 0 0 chr3 4379912 4379940 -155219843 + AT_rich Low_complexity Low_complexity 1 28 0 3 618 261 243 0 0 chr3 4380101 4380175 -155219608 + (TA)n Simple_repeat Simple_repeat 2 75 0 3 618 466 42 42 0 chr3 4380179 4380251 -155219532 + (TAGA)n Simple_repeat Simple_repeat 2 76 0 3 618 1047 256 202 18 chr3 4380588 4381038 -155218745 + MT2A LTR ERVL 1 533 0 3 618 2695 44 12 6 chr3 4381095 4381435 -155218348 - L1_Mus1 LINE L1 0 6567 6226 3 618 282 373 46 42 chr3 4381539 4381777 -155218006 + MLT1E2-int LTR MaLR 298 536 -873 3 618 955 294 105 43 chr3 4382536 4382888 -155216895 + MTE2a LTR MaLR 3 376 -3 3 618 1004 296 58 109 chr3 4383699 4384093 -155215690 - MTE2a LTR MaLR -5 374 1 3 618 307 294 74 81 chr3 4384127 4384275 -155215508 + MLT1E2 LTR MaLR 81 227 -400 3 618 3900 102 27 0 chr3 4384680 4385236 -155214547 - Lx3_Mus LINE L1 0 7009 6439 3 618 959 133 6 29 chr3 4385236 4385406 -155214377 + Lx3_Mus LINE L1 6168 6333 -676 3 618 21 36 0 0 chr3 4385421 4385449 -155214334 + AT_rich Low_complexity Low_complexity 1 28 0 3 618 428 284 17 97 chr3 4386165 4386403 -155213380 - MURVY-int LTR ERV1 -109 7343 7125 3 618 1903 96 31 22 chr3 4386406 4386725 -155213058 - RLTRETN_Mm LTR ERVK 0 322 1 3 618 16107 148 29 21 chr3 4386725 4393551 -155206232 - ETnERV2-int LTR ERVK -198 7208 1 3 618 1872 99 31 22 chr3 4393551 4393870 -155205913 - RLTRETN_Mm LTR ERVK 0 322 1 3 618 480 240 0 0 chr3 4393870 4393994 -155205789 - MuRRS4-int LTR ERV1 -362 7239 7129 3 618 1354 311 62 25 chr3 4394743 4396335 -155203448 - MuRRS4-int LTR ERV1 -2009 5547 3537 3 618 584 326 70 53 chr3 4396895 4397592 -155202191 - MuRRS4-int LTR ERV1 -5781 1997 1159 3 618 982 135 6 43 chr3 4397887 4398050 -155201733 - B2_Mm2 SINE B2 -38 157 1 3 618 265 252 25 56 chr3 4398274 4398493 -155201290 + (CA)n Simple_repeat Simple_repeat 1 212 0 3 618 6947 79 14 1 chr3 4398991 4400115 -155199668 - L1_Mus1 LINE L1 0 6567 5456 3 618 485 277 89 0 chr3 4400162 4400274 -155199509 + RSINE1 SINE B4 6 127 -38 3 618 29 28 0 0 chr3 4400317 4400353 -155199430 + AT_rich Low_complexity Low_complexity 1 36 0 3 618 23 54 0 0 chr3 4400522 4400559 -155199224 + AT_rich Low_complexity Low_complexity 1 37 0 3 618 219 36 0 0 chr3 4401144 4401172 -155198611 + (TG)n Simple_repeat Simple_repeat 1 28 0 3 618 474 18 0 0 chr3 4401318 4401373 -155198410 + (TG)n Simple_repeat Simple_repeat 2 56 0 3 618 2444 119 41 29 chr3 4401455 4401869 -155197914 - L1_Mus3 LINE L1 -5 6633 6215 3 618 369 0 0 0 chr3 4402039 4402080 -155197703 + (CA)n Simple_repeat Simple_repeat 2 42 0 4 618 1476 141 69 29 chr3 4402576 4402853 -155196930 - Lx LINE L1 -1 6653 6366 4 618 247 287 36 18 chr3 4403860 4403970 -155195813 + RMER1C Other Other 1229 1340 -2 4 618 272 161 0 35 chr3 4405160 4405218 -155194565 + L1_Mur2 LINE L1 3762 3817 -2060 4 618 731 195 219 13 chr3 4405217 4405441 -155194342 + L1Md_F3 LINE L1 368 637 -5979 4 618 33417 62 8 8 chr3 4405428 4410346 -155189437 + L1Md_F3 LINE L1 928 5853 -30 4 618 608 53 11 0 chr3 4410351 4410445 -155189338 + L1Md_F3 LINE L1 6476 6570 -14 4 618 541 147 0 10 chr3 4410449 4410552 -155189231 + L1_Mur2 LINE L1 3804 3905 -1972 4 618 5985 36 1 4 chr3 4410599 4411321 -155188462 - L1Md_T LINE L1 -1 6581 5862 4 618 35 24 0 0 chr3 4412353 4412395 -155187388 + AT_rich Low_complexity Low_complexity 1 42 0 4 618 2691 132 200 0 chr3 4412822 4413307 -155186476 + MT2B2 LTR ERVL 3 584 0 4 618 291 381 49 12 chr3 4413848 4414010 -155185773 + B3A SINE B2 1 168 -30 4 618 540 30 0 0 chr3 4414027 4414093 -155185690 + (CA)n Simple_repeat Simple_repeat 1 66 0 4 618 266 47 47 0 chr3 4414094 4414137 -155185646 + (CAGAGA)n Simple_repeat Simple_repeat 2 46 0 4 618 232 61 39 39 chr3 4414267 4414318 -155185465 + (TTTG)n Simple_repeat Simple_repeat 2 52 0 4 618 1144 68 7 0 chr3 4414327 4414473 -155185310 - B1_Mus1 SINE Alu 0 148 2 4 618 21 89 0 0 chr3 4414522 4414578 -155185205 + AT_rich Low_complexity Low_complexity 1 56 0 4 618 896 136 12 12 chr3 4414675 4414839 -155184944 - Lx LINE L1 -10 6644 6481 4 618 23 68 0 0 chr3 4415664 4415708 -155184075 + AT_rich Low_complexity Low_complexity 1 44 0 4 618 1067 91 0 7 chr3 4415886 4416020 -155183763 + B1_Mus1 SINE Alu 2 135 -13 4 618 186 71 0 0 chr3 4416020 4416048 -155183735 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 4 618 309 309 131 7 chr3 4416345 4416498 -155183285 - MLT1A1 LTR MaLR -236 172 1 4 618 2140 211 112 27 chr3 4416775 4417408 -155182375 + RMER6C LTR ERVK 4 690 0 4 618 8057 122 33 19 chr3 4417479 4419105 -155180678 - Lx3_Mus LINE L1 -3 7006 5359 4 618 29605 101 18 9 chr3 4419127 4425261 -155174522 - L1_Mus1 LINE L1 0 6567 380 4 618 6714 143 31 14 chr3 4425572 4426680 -155173103 - Lx3A LINE L1 -11 6970 5840 4 618 4474 10 0 0 chr3 4426680 4427173 -155172610 - MT2_Mm LTR ERVL 0 493 1 4 618 6714 143 31 14 chr3 4427173 4427227 -155172556 - Lx3A LINE L1 -1142 5839 5788 4 618 8766 111 22 42 chr3 4427227 4427546 -155172237 - L1_Mur1 LINE L1 -289 5597 5275 4 618 2191 89 97 9 chr3 4427546 4427875 -155171908 - L1Md_F2 LINE L1 -12 6570 6213 4 618 8766 111 22 42 chr3 4427875 4428479 -155171304 - L1_Mur1 LINE L1 -612 5274 4682 4 618 722 153 0 57 chr3 4428479 4428638 -155171145 + L1_Mus2 LINE L1 6417 6566 0 4 618 8766 111 22 42 chr3 4428638 4429313 -155170470 - L1_Mur1 LINE L1 -1205 4681 4029 4 618 24 53 0 0 chr3 4429401 4429439 -155170344 + AT_rich Low_complexity Low_complexity 1 38 0 4 618 2892 291 64 2 chr3 4429541 4430521 -155169262 - Lx6 LINE L1 -293 7167 6127 4 618 8318 213 63 89 chr3 4430558 4431599 -155168184 - L1_Mur3 LINE L1 -1176 4704 3721 4 618 1109 83 14 0 chr3 4431599 4431744 -155168039 - B1_Mm SINE Alu 0 147 1 4 618 8318 213 63 89 chr3 4431744 4433730 -155166053 - L1_Mur3 LINE L1 -2160 3720 1756 4 618 450 296 120 16 chr3 4433729 4433921 -155165862 + Lx8 LINE L1 7008 7219 -254 4 618 1648 152 36 23 chr3 4433931 4434240 -155165543 - Lx3_Mus LINE L1 0 7009 6697 4 618 518 191 0 0 chr3 4434240 4434345 -155165438 - Lx3_Mus LINE L1 -397 6612 6508 4 618 183 353 29 0 chr3 4434704 4434772 -155165011 + MIR SINE MIR 41 110 -152 4 618 191 36 36 0 chr3 4435484 4435512 -155164271 + (CAA)n Simple_repeat Simple_repeat 2 30 0 4 618 475 310 44 12 chr3 4435512 4435672 -155164111 - MLT1B LTR MaLR -68 322 158 4 618 546 140 0 0 chr3 4435719 4435819 -155163964 + (TGG)n Simple_repeat Simple_repeat 2 101 0 4 618 729 342 38 68 chr3 4435847 4436139 -155163644 - B4A SINE B4 -4 288 6 4 618 353 336 72 68 chr3 4436281 4436517 -155163266 - Tigger5 DNA MER2_type -2163 243 7 4 618 269 204 20 26 chr3 4436559 4436710 -155163073 + (TA)n Simple_repeat Simple_repeat 2 151 0 4 618 458 216 17 6 chr3 4436748 4436925 -155162858 + (TA)n Simple_repeat Simple_repeat 1 179 0 4 618 36225 32 0 0 chr3 4436927 4443132 -155156651 - L1Md_T LINE L1 -1 6584 282 4 618 2837 105 10 2 chr3 4443441 4443852 -155155931 + L1_Mus3 LINE L1 6222 6635 -3 4 618 525 32 0 0 chr3 4444404 4444467 -155155316 + (TA)n Simple_repeat Simple_repeat 2 64 0 4 618 441 0 0 0 chr3 4447387 4447436 -155152347 + (A)n Simple_repeat Simple_repeat 1 49 0 4 618 2401 39 0 0 chr3 4450529 4450811 -155148972 - L1Md_F2 LINE L1 -206 6376 6095 4 618 1009 50 0 7 chr3 4450811 4450952 -155148831 + L1Md_F2 LINE L1 6440 6579 -3 4 618 230 324 0 0 chr3 4451118 4451189 -155148594 + (CA)n Simple_repeat Simple_repeat 2 72 0 4 618 24 0 0 0 chr3 4452293 4452317 -155147466 + AT_rich Low_complexity Low_complexity 1 24 0 4 618 1230 55 0 53 chr3 4452330 4452520 -155147263 - L1Md_F2 LINE L1 0 6582 6403 4 618 631 288 0 0 chr3 4452520 4452666 -155147117 + B3 SINE B2 41 186 -30 4 618 234 62 0 0 chr3 4452666 4452698 -155147085 + (CCA)n Simple_repeat Simple_repeat 3 34 0 4 618 446 33 17 0 chr3 4454041 4454101 -155145682 + (CA)n Simple_repeat Simple_repeat 2 62 0 4 618 300 259 9 35 chr3 4454862 4454978 -155144805 + Lx8 LINE L1 7352 7464 -9 4 77 497 309 89 88 chr3 4455963 4456465 -155143318 - L1MA4 LINE L1 -163 6137 5625 4 619 301 100 0 0 chr3 4456631 4456681 -155143102 - Lx LINE L1 -2 6995 6946 4 619 9269 177 22 25 chr3 4456798 4459040 -155140743 - Lx LINE L1 0 6654 4482 4 619 293 0 0 26 chr3 4459048 4459086 -155140697 + (TTTTG)n Simple_repeat Simple_repeat 2 38 0 4 619 1114 63 0 27 chr3 4459086 4459223 -155140560 - B1_Mus2 SINE Alu -13 134 1 4 619 9269 195 33 38 chr3 4459223 4459827 -155139956 - Lx LINE L1 -1402 4481 3819 4 619 3867 89 15 0 chr3 4459996 4460523 -155139260 + L1_Mus1 LINE L1 6033 6567 0 4 619 32 0 0 0 chr3 4460540 4460572 -155139211 + AT_rich Low_complexity Low_complexity 1 32 0 4 619 25 51 0 0 chr3 4460993 4461032 -155138751 + AT_rich Low_complexity Low_complexity 1 39 0 4 619 1255 336 8 13 chr3 4461517 4461906 -155137877 + Lx5 LINE L1 6556 6942 -108 4 619 348 43 0 0 chr3 4461906 4461952 -155137831 + (TTTC)n Simple_repeat Simple_repeat 2 47 0 4 619 195 114 0 0 chr3 4462230 4462265 -155137518 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 4 619 587 179 16 0 chr3 4463667 4463790 -155135993 + RLTR31A_Mm LTR ERVK 212 336 -248 4 619 6437 114 65 3 chr3 4463883 4465040 -155134743 - L1_Mus3 LINE L1 0 6638 5419 4 619 614 69 11 0 chr3 4465038 4465125 -155134658 + L1_Mus3 LINE L1 5341 5428 -455 4 619 2368 54 7 0 chr3 4465125 4465420 -155134363 - L1_Mus2 LINE L1 -683 5883 5587 4 619 5478 116 2 1 chr3 4465423 4466242 -155133541 + L1_Mus2 LINE L1 4756 5575 -308 4 619 1519 120 0 0 chr3 4467488 4467705 -155132078 - Lx2 LINE L1 -236 6761 6545 4 619 1153 175 47 4 chr3 4467705 4467958 -155131825 + Lx2 LINE L1 6733 6996 -1 4 619 184 364 9 69 chr3 4468688 4468848 -155130935 - L2c LINE L2 -66 3321 3180 4 619 449 302 80 50 chr3 4468995 4469194 -155130589 + B3 SINE B2 5 209 -7 4 619 189 266 47 0 chr3 4470173 4470237 -155129546 - L2 LINE L2 -1065 2354 2288 4 619 514 332 31 67 chr3 4470588 4470811 -155128972 + B4 SINE B4 9 223 -69 4 619 216 250 0 0 chr3 4470871 4470919 -155128864 + (CA)n Simple_repeat Simple_repeat 1 48 0 4 619 22 0 0 0 chr3 4470963 4470985 -155128798 + AT_rich Low_complexity Low_complexity 1 22 0 4 619 864 250 19 9 chr3 4472319 4472529 -155127254 + URR1A DNA MER1_type 14 225 -1 4 619 273 290 62 43 chr3 4472384 4472546 -155127237 - CYRA11_Mm Unknown Y-chromosome -298 319 155 4 619 432 0 0 0 chr3 4472747 4472795 -155126988 + (TG)n Simple_repeat Simple_repeat 2 49 0 4 619 29 84 0 0 chr3 4472855 4472926 -155126857 + AT_rich Low_complexity Low_complexity 1 71 0 4 619 4243 90 0 0 chr3 4472980 4473549 -155126234 - L1_Mus1 LINE L1 -1 6566 5998 4 619 3717 46 0 0 chr3 4473548 4474002 -155125781 - L1Md_F2 LINE L1 -12 6570 6117 4 619 2447 93 8 3 chr3 4474002 4474360 -155125423 - L1_Mus1 LINE L1 -582 5985 5649 4 619 25 51 0 0 chr3 4474797 4474836 -155124947 + AT_rich Low_complexity Low_complexity 1 39 0 4 619 4810 124 22 0 chr3 4474837 4475576 -155124207 - Lx2 LINE L1 -122 6875 6121 4 619 2201 137 57 0 chr3 4475575 4475947 -155123836 + Lx2 LINE L1 5763 6155 -842 4 619 483 263 71 74 chr3 4476374 4476698 -155123085 + L1_Mur3 LINE L1 2413 2735 -3145 4 619 1263 246 119 6 chr3 4476716 4477068 -155122715 - Lx5 LINE L1 -726 6324 5933 4 619 3604 205 33 6 chr3 4477070 4477776 -155122007 + Lx5 LINE L1 6319 7043 -7 4 619 200 34 0 33 chr3 4477830 4477860 -155121923 + (CAAAA)n Simple_repeat Simple_repeat 4 32 0 4 619 3400 175 28 32 chr3 4477860 4478551 -155121232 - Lx3C LINE L1 -468 6508 5821 4 619 12130 142 28 15 chr3 4478587 4481561 -155118222 - L1VL4 LINE L1 -2155 3731 823 4 619 1432 136 162 0 chr3 4481588 4481853 -155117930 + Lx2B LINE L1 5490 5797 -86 4 619 5976 96 1 109 chr3 4481835 4482094 -155117689 - L1_Mm LINE L1 -504 5379 5234 4 619 1011 117 0 0 chr3 4482094 4482274 -155117509 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 4 619 5976 96 1 109 chr3 4482274 4483078 -155116705 - L1_Mm LINE L1 -650 5233 4431 4 619 3398 86 10 6 chr3 4483078 4483557 -155116226 + L1Md_F2 LINE L1 6102 6582 0 4 619 31 26 0 0 chr3 4483809 4483847 -155115936 + AT_rich Low_complexity Low_complexity 1 38 0 4 619 5688 98 0 0 chr3 4483882 4484659 -155115124 + L1_Mus2 LINE L1 5789 6565 -1 4 619 828 92 0 0 chr3 4484666 4484785 -155114998 + (GAAA)n Simple_repeat Simple_repeat 2 120 0 4 619 478 174 125 29 chr3 4484797 4484933 -155114850 - L1Md_F LINE L1 -5801 718 570 4 619 863 213 71 0 chr3 4484972 4485067 -155114716 - MusHAL1 LINE L1 -1015 1697 1589 4 619 261 0 0 0 chr3 4485067 4485096 -155114687 + (TTG)n Simple_repeat Simple_repeat 2 30 0 4 619 863 213 71 0 chr3 4485096 4485197 -155114586 - MusHAL1 LINE L1 -1124 1588 1488 4 619 910 212 4 26 chr3 4485200 4485428 -155114355 + L1_Mur1 LINE L1 3837 4059 -1827 4 619 1288 207 11 0 chr3 4485481 4485747 -155114036 + Lx2B LINE L1 5811 6079 -921 4 619 2683 214 43 52 chr3 4485767 4486422 -155113361 + Lx3C LINE L1 6326 6974 -2 4 619 730 316 137 29 chr3 4486426 4486981 -155112802 + L1M3 LINE L1 3218 3839 -2301 4 619 1801 125 88 115 chr3 4486981 4487469 -155112314 + IAPLTR2_Mm LTR ERVK 1 475 0 4 619 730 316 137 29 chr3 4487469 4487670 -155112113 + L1M3 LINE L1 3840 4056 -2084 4 619 180 111 0 0 chr3 4487706 4487733 -155112050 + (CAA)n Simple_repeat Simple_repeat 1 27 0 4 619 247 284 30 0 chr3 4487737 4487804 -155111979 + Lx6 LINE L1 6758 6826 -634 5 619 333 68 0 0 chr3 4487834 4487878 -155111905 + (TTTA)n Simple_repeat Simple_repeat 3 46 0 5 619 27166 124 50 22 chr3 4487883 4493864 -155105919 - Lx3_Mus LINE L1 -16 6993 865 5 619 1074 311 73 25 chr3 4493870 4494361 -155105422 + Lx6 LINE L1 6498 7388 -72 5 619 365 243 54 46 chr3 4494381 4494634 -155105149 + L1M3 LINE L1 4034 4325 -1818 4 619 22 0 0 0 chr3 4494636 4494658 -155105125 + AT_rich Low_complexity Low_complexity 1 22 0 5 619 5013 190 71 13 chr3 4494736 4495786 -155103997 + Lx3B LINE L1 5863 6973 0 5 619 7305 118 7 4 chr3 4495813 4497228 -155102555 + L1_Mus3 LINE L1 5211 6635 -3 5 619 563 283 72 90 chr3 4497544 4497932 -155101851 - MER110A LTR ERV1 -50 418 38 5 619 29 0 0 0 chr3 4498340 4498369 -155101414 + AT_rich Low_complexity Low_complexity 1 29 0 5 619 21 0 0 0 chr3 4499482 4499503 -155100280 + AT_rich Low_complexity Low_complexity 1 21 0 5 619 23 0 0 0 chr3 4500494 4500517 -155099266 + AT_rich Low_complexity Low_complexity 1 23 0 1 619 2025 164 18 18 chr3 4500732 4501117 -155098666 - Lx2 LINE L1 0 6997 6613 2 619 414 0 0 0 chr3 4501361 4501407 -155098376 + (CA)n Simple_repeat Simple_repeat 2 47 0 3 619 405 0 0 0 chr3 4501407 4501451 -155098332 + (TC)n Simple_repeat Simple_repeat 1 45 0 4 619 413 187 0 28 chr3 4501693 4501836 -155097947 + CT-rich Low_complexity Low_complexity 2 140 0 5 619 228 250 0 27 chr3 4501842 4501916 -155097867 + (TCTCTG)n Simple_repeat Simple_repeat 1 72 0 6 619 291 309 104 81 chr3 4503623 4503845 -155095938 + B4 SINE B4 46 272 -20 7 619 1662 99 174 8 chr3 4503900 4504165 -155095618 - RLTR27 LTR ERVK 0 309 1 8 619 1568 222 33 26 chr3 4504165 4504730 -155095053 - MMERVK10C-int LTR ERVK 0 7581 6907 8 619 3907 312 25 35 chr3 4505076 4507180 -155092603 - MMERVK10C-int LTR ERVK -4333 3248 1166 8 619 214 295 0 49 chr3 4507472 4507554 -155092229 + T-rich Low_complexity Low_complexity 5 82 0 9 619 636 249 45 55 chr3 4507555 4507755 -155092028 - MMERVK10C-int LTR ERVK -1135 852 655 8 619 296 130 0 0 chr3 4507787 4507833 -155091950 - MMERVK10C-int LTR ERVK -7314 267 222 8 619 1641 98 206 4 chr3 4507865 4508122 -155091661 - RLTR27 LTR ERVK 0 309 1 1 619 511 335 31 57 chr3 4508150 4508365 -155091418 + B3A SINE B2 7 214 -2 1 619 1859 214 42 0 chr3 4508374 4508757 -155091026 + MTC LTR MaLR 5 403 -18 1 619 180 83 83 0 chr3 4510015 4510051 -155089732 + L3 LINE CR1 105 143 -4346 1 619 25 51 0 0 chr3 4510120 4510159 -155089624 + AT_rich Low_complexity Low_complexity 1 39 0 1 619 366 88 14 14 chr3 4510162 4510231 -155089552 - L1_Mus4 LINE L1 -7 6629 6561 1 619 22285 159 14 15 chr3 4510231 4511917 -155087866 - L1VL4 LINE L1 -520 5363 3660 1 619 2665 81 0 0 chr3 4511917 4512275 -155087508 - L1_Mus1 LINE L1 -2 6565 6208 1 619 22285 159 14 15 chr3 4512275 4512449 -155087334 - L1VL4 LINE L1 -2224 3659 3490 1 619 215 31 31 0 chr3 4512449 4512481 -155087302 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 1 619 22285 159 14 15 chr3 4512481 4513603 -155086180 - L1VL4 LINE L1 -2394 3489 2360 1 619 315 0 0 0 chr3 4513603 4513638 -155086145 + (TG)n Simple_repeat Simple_repeat 2 36 0 1 619 22285 191 16 18 chr3 4513638 4515517 -155084266 - L1VL4 LINE L1 -3524 2359 503 1 619 333 175 0 0 chr3 4515527 4515600 -155084183 - Lx LINE L1 -24 6630 6542 2 619 23 54 0 0 chr3 4515968 4516005 -155083778 + AT_rich Low_complexity Low_complexity 1 37 0 2 619 23 0 0 0 chr3 4517037 4517060 -155082723 + AT_rich Low_complexity Low_complexity 1 23 0 2 619 311 311 102 51 chr3 4517222 4517587 -155082196 - L1MD1 LINE L1 -257 5985 5604 2 619 430 17 17 17 chr3 4517587 4517647 -155082136 + (TTG)n Simple_repeat Simple_repeat 1 60 0 2 619 311 311 102 51 chr3 4517647 4517813 -155081970 - L1MD1 LINE L1 -639 5603 5427 2 619 244 255 62 21 chr3 4518119 4518215 -155081568 - L1MD1 LINE L1 -2207 3939 3840 2 619 8187 148 42 102 chr3 4518235 4519172 -155080611 - L1Md_A LINE L1 -767 5815 4883 2 619 6247 34 0 1 chr3 4519172 4519909 -155079874 + L1Md_T LINE L1 5835 6570 -12 2 619 8187 193 56 134 chr3 4519909 4519969 -155079814 - L1Md_A LINE L1 -1004 4882 4881 2 619 6970 132 27 12 chr3 4519969 4521116 -155078667 + Lx3_Mus LINE L1 5827 6990 -19 2 619 8187 193 56 134 chr3 4521116 4521383 -155078400 - L1Md_A LINE L1 -1006 4880 4643 2 619 279 0 0 0 chr3 4521383 4521414 -155078369 + (CATA)n Simple_repeat Simple_repeat 2 32 0 2 619 8187 193 56 134 chr3 4521414 4522736 -155077047 - L1Md_A LINE L1 -1244 4642 3492 2 619 198 0 0 0 chr3 4522736 4522758 -155077025 + (TTTG)n Simple_repeat Simple_repeat 3 24 0 2 619 8187 193 56 134 chr3 4522758 4523365 -155076418 - L1Md_A LINE L1 -2395 3491 2872 2 619 426 85 0 0 chr3 4523365 4523424 -155076359 + (TTCC)n Simple_repeat Simple_repeat 4 62 0 3 619 800 107 16 38 chr3 4523443 4523523 -155076260 + polypyrimidine Low_complexity Low_complexity 103 180 0 3 619 1018 100 0 32 chr3 4523523 4523709 -155076074 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 3 619 800 107 16 38 chr3 4523709 4523812 -155075971 + polypyrimidine Low_complexity Low_complexity 1 102 0 3 619 1342 131 30 37 chr3 4523816 4523836 -155075947 - MusHAL1 LINE L1 -1028 1684 1667 3 619 1025 109 11 0 chr3 4523836 4524011 -155075772 + (TTTC)n Simple_repeat Simple_repeat 3 179 0 3 619 1342 131 30 37 chr3 4524011 4524260 -155075523 - MusHAL1 LINE L1 -1046 1666 1417 3 619 4209 194 110 8 chr3 4524252 4524543 -155075240 + Lx LINE L1 3793 4260 -1623 3 619 2372 94 33 0 chr3 4524543 4524874 -155074909 - L1_Mus1 LINE L1 -6 6561 6220 3 619 4209 194 30 10 chr3 4524874 4525664 -155074119 + Lx LINE L1 4254 5052 -831 3 619 28418 130 32 10 chr3 4525841 4532080 -155067703 + Lx2 LINE L1 417 6793 -204 3 619 331 311 84 67 chr3 4532219 4532570 -155067213 - L1MDa LINE L1 -4735 1898 1534 3 619 5611 197 104 86 chr3 4532654 4534280 -155065503 - Lx2A1 LINE L1 -16 6992 5373 4 619 1051 74 22 28 chr3 4534280 4534461 -155065322 + (GGAAA)n Simple_repeat Simple_repeat 1 180 0 4 619 2841 190 50 198 chr3 4534461 4534807 -155064976 - Lx2A1 LINE L1 -514 5372 5009 4 619 288 229 0 46 chr3 4534885 4534972 -155064811 - Lx6 LINE L1 -28 7432 7350 4 619 545 223 40 77 chr3 4534969 4535222 -155064561 + Lx LINE L1 5601 5818 -1240 3 619 1026 110 7 0 chr3 4535576 4535722 -155064061 - B1_Mus1 SINE Alu -1 147 1 4 619 1120 92 0 17 chr3 4537174 4537350 -155062433 - L1Md_F2 LINE L1 -1 6581 6409 4 619 5012 85 3 6 chr3 4537614 4538291 -155061492 - L1_Mus2 LINE L1 0 6566 5892 4 619 1443 187 10 40 chr3 4538541 4538837 -155060946 + Lx LINE L1 6367 6653 -1 3 619 576 0 0 0 chr3 4540098 4540162 -155059621 + (TA)n Simple_repeat Simple_repeat 2 65 0 4 619 470 276 90 48 chr3 4540173 4540550 -155059233 - Lx9 LINE L1 -43 7601 7209 4 619 462 325 48 6 chr3 4540581 4540748 -155059035 - MTE2b LTR MaLR -201 178 5 4 619 362 341 107 25 chr3 4540750 4541144 -155058639 + L1ME1 LINE L1 5552 5977 -202 4 619 23 68 0 0 chr3 4541278 4541322 -155058461 + AT_rich Low_complexity Low_complexity 1 44 0 5 619 211 329 99 14 chr3 4541333 4541404 -155058379 - ID4_ SINE ID -2 81 5 5 619 1517 102 5 0 chr3 4541475 4541690 -155058093 - L1_Mus2 LINE L1 -1 6565 6350 5 619 13199 165 40 48 chr3 4541697 4545062 -155054721 - L1Md_F LINE L1 -363 3454 121 5 619 24 0 0 0 chr3 4545900 4545924 -155053859 + AT_rich Low_complexity Low_complexity 1 24 0 5 619 188 154 0 71 chr3 4546483 4546553 -155053230 + A-rich Low_complexity Low_complexity 1 65 0 5 619 480 67 46 28 chr3 4546822 4546930 -155052853 + (CAAAA)n Simple_repeat Simple_repeat 1 110 0 5 619 2176 261 41 96 chr3 4547753 4548695 -155051088 - RMER17B LTR ERVK -43 915 50 5 619 246 235 24 12 chr3 4548873 4548955 -155050828 + (CAGA)n Simple_repeat Simple_repeat 2 84 0 5 619 222 37 0 0 chr3 4549142 4549169 -155050614 + (TA)n Simple_repeat Simple_repeat 1 27 0 5 619 24 53 0 0 chr3 4550006 4550044 -155049739 + AT_rich Low_complexity Low_complexity 1 38 0 6 619 846 150 101 12 chr3 4550632 4550801 -155048982 - URR1A DNA MER1_type 0 226 43 6 619 4768 123 22 27 chr3 4550853 4551640 -155048143 + L1VL1 LINE L1 331 1113 -5309 6 619 15367 136 15 11 chr3 4551665 4554269 -155045514 + L1_Mus3 LINE L1 2643 5254 -629 6 619 2292 175 50 31 chr3 4554269 4554746 -155045037 - RLTR44D LTR ERVK 0 486 1 6 619 16346 59 19 37 chr3 4554753 4557611 -155042172 - RLTR44-int LTR ERVK -3 2809 1 6 619 2104 179 49 30 chr3 4557623 4558094 -155041689 - RLTR44D LTR ERVK -3 483 4 6 619 6525 127 22 21 chr3 4558096 4559496 -155040287 + L1_Mus3 LINE L1 5248 6638 0 6 619 304 261 44 161 chr3 4560954 4561091 -155038692 + B4 SINE B4 172 292 0 6 619 453 172 0 0 chr3 4561091 4561184 -155038599 + (CA)n Simple_repeat Simple_repeat 1 93 0 6 619 189 143 57 0 chr3 4562195 4562230 -155037553 - L3 LINE CR1 -3588 901 865 6 619 45 34 0 0 chr3 4563718 4563777 -155036006 + AT_rich Low_complexity Low_complexity 1 59 0 6 619 290 355 78 57 chr3 4563975 4564205 -155035578 - MT2A LTR ERVL -68 465 231 6 619 226 197 134 15 chr3 4564369 4564436 -155035347 - MTEa LTR MaLR -304 75 1 7 619 492 311 32 41 chr3 4564696 4564914 -155034869 - B3 SINE B2 0 216 1 7 619 26 0 0 0 chr3 4565315 4565341 -155034442 + AT_rich Low_complexity Low_complexity 1 26 0 7 619 194 150 25 0 chr3 4567164 4567204 -155032579 + T-rich Low_complexity Low_complexity 5 45 0 7 619 892 151 0 7 chr3 4567725 4567863 -155031920 + B1_Mus1 SINE Alu 3 140 -8 7 619 243 0 0 0 chr3 4567863 4567890 -155031893 + (CAAT)n Simple_repeat Simple_repeat 2 28 0 7 619 295 215 97 61 chr3 4567994 4568108 -155031675 - Lx9 LINE L1 -198 7446 7329 7 619 418 309 71 16 chr3 4568091 4568275 -155031508 - Lx8 LINE L1 -648 6825 6632 7 619 367 262 0 65 chr3 4568280 4568435 -155031348 - RMER1C Other Other 0 1342 1198 7 619 1436 244 36 62 chr3 4568484 4569080 -155030703 + L1_Mus2 LINE L1 464 1005 -5633 7 619 6714 76 12 6 chr3 4569066 4569961 -155029822 + L1_Mm LINE L1 4685 5587 -296 8 619 7783 54 15 0 chr3 4569961 4570941 -155028842 + L1Md_F2 LINE L1 5588 6582 0 8 619 6714 76 12 6 chr3 4570941 4570954 -155028829 + L1_Mm LINE L1 5588 5599 -284 8 619 27556 133 11 9 chr3 4570943 4576520 -155023263 + L1_Mus2 LINE L1 981 6565 -1 7 619 1062 304 153 42 chr3 4576536 4576630 -155023153 - RMER1C Other Other -135 1207 1087 7 619 408 40 0 0 chr3 4576630 4576680 -155023103 + (CA)n Simple_repeat Simple_repeat 1 50 0 8 619 1234 29 23 6 chr3 4576680 4576851 -155022932 + (GA)n Simple_repeat Simple_repeat 2 176 0 8 619 1062 304 153 42 chr3 4576851 4577331 -155022452 - RMER1C Other Other -256 1086 570 7 619 8222 42 6 0 chr3 4577466 4578576 -155021207 - L1Md_F3 LINE L1 -1 6583 5468 8 619 1138 82 0 0 chr3 4578999 4579146 -155020637 - B1_Mus2 SINE Alu 0 147 1 8 619 15110 102 15 19 chr3 4579147 4582262 -155017521 - L1Md_F3 LINE L1 -2421 3462 382 8 619 27 0 0 0 chr3 4583437 4583464 -155016319 + AT_rich Low_complexity Low_complexity 1 27 0 8 619 37 19 0 18 chr3 4583613 4583642 -155016141 + AT_rich Low_complexity Low_complexity 1 29 0 8 619 1109 82 0 0 chr3 4583642 4583788 -155015995 - B1_Mus1 SINE Alu -2 146 1 8 619 37 19 0 18 chr3 4583788 4583813 -155015970 + AT_rich Low_complexity Low_complexity 1 25 0 8 619 594 183 0 0 chr3 4584012 4584127 -155015656 + GA-rich Low_complexity Low_complexity 2 116 0 9 77 35327 37 1 0 chr3 4584515 4590366 -155009417 + L1Md_T LINE L1 1 5589 -297 9 620 8966 6 0 0 chr3 4590366 4591388 -155008395 + L1Md_T LINE L1 5590 6585 0 9 620 203 324 29 0 chr3 4592219 4592321 -155007462 + (CATA)n Simple_repeat Simple_repeat 4 108 0 9 620 339 167 0 0 chr3 4594533 4594599 -155005184 + (TA)n Simple_repeat Simple_repeat 1 66 0 9 620 486 0 0 0 chr3 4596216 4596270 -155003513 + (TAAAA)n Simple_repeat Simple_repeat 3 56 0 9 620 12365 91 2 3 chr3 4596685 4599069 -155000714 - L1_Mus1 LINE L1 0 6567 4188 9 620 16163 133 6 0 chr3 4599069 4601648 -154998135 - L1_Mm LINE L1 -528 5355 2763 9 620 2620 102 11 0 chr3 4601817 4602191 -154997592 - L1_Mus2 LINE L1 -402 6164 5787 9 620 6491 136 25 2 chr3 4602186 4602698 -154997085 + L1_Mm LINE L1 4724 5233 -650 9 620 275 0 29 0 chr3 4602698 4602733 -154997050 + (TA)n Simple_repeat Simple_repeat 1 36 0 9 620 6491 136 25 2 chr3 4602733 4603259 -154996524 + L1_Mm LINE L1 5234 5785 -98 9 620 23 0 0 0 chr3 4603357 4603380 -154996403 + AT_rich Low_complexity Low_complexity 1 23 0 1 620 225 218 0 0 chr3 4604115 4604193 -154995590 + (CTG)n Simple_repeat Simple_repeat 1 78 0 1 620 321 47 0 0 chr3 4604213 4604256 -154995527 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 620 22 0 0 0 chr3 4606641 4606663 -154993120 + AT_rich Low_complexity Low_complexity 1 22 0 1 620 444 19 0 0 chr3 4606836 4606889 -154992894 + (TG)n Simple_repeat Simple_repeat 2 54 0 1 620 1131 256 30 9 chr3 4607241 4607576 -154992207 + L1Md_F LINE L1 31 372 -6147 1 620 7371 85 7 0 chr3 4607583 4608723 -154991060 + L1_Mus1 LINE L1 5419 6567 0 1 620 484 335 19 12 chr3 4608756 4609013 -154990770 - L1MA5 LINE L1 -377 5923 5665 1 620 925 102 81 7 chr3 4609114 4609262 -154990521 + L1_Mm LINE L1 5531 5689 -194 1 620 3207 19 50 0 chr3 4609370 4609747 -154990036 + MTA_Mm LTR MaLR 1 396 0 1 620 364 308 28 0 chr3 4610482 4610589 -154989194 + B1F SINE Alu 38 147 -2 1 620 21 0 0 0 chr3 4610589 4610610 -154989173 + AT_rich Low_complexity Low_complexity 1 21 0 1 620 2155 126 3 3 chr3 4610629 4610955 -154988828 + MTB_Mm LTR MaLR 1 326 -81 1 620 21 0 0 0 chr3 4611007 4611028 -154988755 + AT_rich Low_complexity Low_complexity 1 21 0 1 620 3463 15 5 0 chr3 4611146 4611539 -154988244 + MTA_Mm LTR MaLR 2 396 0 1 620 768 145 0 0 chr3 4611574 4611705 -154988078 + (GGGA)n Simple_repeat Simple_repeat 4 134 0 1 620 7970 142 39 30 chr3 4611899 4613688 -154986095 - Lx3C LINE L1 -4 6972 5166 1 620 588 268 202 0 chr3 4613684 4613882 -154985901 - L1_Mur1 LINE L1 -6107 875 638 1 620 284 155 33 33 chr3 4613975 4614035 -154985748 - Lx3C LINE L1 -6233 751 692 1 620 317 298 106 78 chr3 4615072 4615214 -154984569 - B1_Mur1 SINE Alu -1 148 3 1 620 23 33 0 0 chr3 4615633 4615663 -154984120 + AT_rich Low_complexity Low_complexity 1 30 0 1 620 2080 179 219 28 chr3 4616172 4616748 -154983035 - RMER6C LTR ERVK -4 686 1 1 620 2061 194 43 13 chr3 4616771 4617381 -154982402 - RMER6-int LTR ERVK -1974 1203 776 1 620 610 126 18 9 chr3 4617375 4617487 -154982296 - RMER6-int LTR ERVK -2522 655 543 1 620 2185 196 28 30 chr3 4617538 4618000 -154981783 + RMER6-int LTR ERVK 2711 3171 -6 1 620 1497 188 31 3 chr3 4618004 4618298 -154981485 + RMER6C LTR ERVK 1 302 -388 1 620 225 143 34 51 chr3 4618299 4618358 -154981425 - L1_Mur2 LINE L1 -3764 2116 2059 1 620 275 276 0 0 chr3 4618362 4618420 -154981363 + (TG)n Simple_repeat Simple_repeat 1 58 0 1 620 588 240 27 27 chr3 4618422 4618606 -154981177 - L1_Mur2 LINE L1 -3820 2057 1874 1 620 207 0 0 0 chr3 4618877 4618900 -154980883 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 1 620 1064 128 0 0 chr3 4618900 4619048 -154980735 - B1_Mus1 SINE Alu 0 148 1 1 620 57 90 0 0 chr3 4620178 4620333 -154979450 + AT_rich Low_complexity Low_complexity 1 155 0 1 620 35746 42 4 8 chr3 4620380 4625557 -154974226 + L1Md_T LINE L1 406 5589 -297 1 620 8365 35 0 0 chr3 4625557 4626553 -154973230 + L1Md_T LINE L1 5590 6585 0 1 620 390 145 45 9 chr3 4626627 4626738 -154973045 + (TA)n Simple_repeat Simple_repeat 1 115 0 1 620 317 299 165 50 chr3 4626916 4627317 -154972466 + L1M4 LINE L1 2146 2592 -3554 1 620 789 261 59 0 chr3 4627339 4627542 -154972241 + B3 SINE B2 2 216 0 1 620 2410 176 126 20 chr3 4627773 4628322 -154971461 + L1Md_F LINE L1 307 913 -5606 1 620 3955 103 8 12 chr3 4628322 4628914 -154970869 + L1_Mus1 LINE L1 5978 6567 0 1 620 1073 113 0 6 chr3 4628967 4629136 -154970647 + (GAAA)n Simple_repeat Simple_repeat 1 168 0 1 620 6407 135 10 15 chr3 4629333 4630361 -154969422 + RLTR13D5 LTR ERVK 1 1023 0 1 620 466 332 31 79 chr3 4630722 4631039 -154968744 + L1M4 LINE L1 2818 3119 -3027 1 620 518 298 3 155 chr3 4631039 4631381 -154968402 + L1VL1 LINE L1 29 318 -6104 1 620 8047 49 1 1 chr3 4631535 4633042 -154966741 - L1Md_F2 LINE L1 -14 6568 5063 1 620 1431 47 0 0 chr3 4633054 4633225 -154966558 + L1_Mm LINE L1 5411 5581 -302 1 620 236 303 20 0 chr3 4633227 4633326 -154966457 + L1_Mus2 LINE L1 715 815 -5801 1 620 26669 149 5 56 chr3 4633323 4635825 -154963958 + L1_Mus2 LINE L1 725 3008 -2875 1 620 3516 42 0 0 chr3 4635825 4636251 -154963532 + L1Md_T LINE L1 6157 6582 0 1 620 26669 126 14 53 chr3 4636251 4639360 -154960423 + L1_Mus2 LINE L1 3009 6019 -547 1 620 1353 110 52 26 chr3 4639360 4639606 -154960177 - RLTR10C LTR ERVK -116 249 1 1 620 2914 127 23 21 chr3 4639606 4640090 -154959693 - MMERVK10C-int LTR ERVK 0 7680 7196 1 620 33832 75 3 1 chr3 4640093 4645285 -154954498 + L1Md_F3 LINE L1 422 5586 -297 1 620 7654 50 13 3 chr3 4645285 4646261 -154953522 + L1Md_F3 LINE L1 5587 6572 -12 1 620 18728 76 7 0 chr3 4646277 4648674 -154951109 - MMERVK10C-int LTR ERVK -402 7179 4768 1 620 300 241 76 0 chr3 4649068 4649147 -154950636 - RMER16-int LTR ERVK -4595 811 727 1 620 510 171 34 0 chr3 4649153 4649241 -154950542 - RMER16-int LTR ERVK -5004 402 312 1 620 1090 158 0 111 chr3 4649337 4649607 -154950176 - MMERVK10C-int LTR ERVK -6629 952 713 1 620 868 172 0 0 chr3 4649621 4649766 -154950017 - MMERVK10C-int LTR ERVK -7215 366 222 1 620 248 235 0 19 chr3 4649766 4649818 -154949965 - RLTR27 LTR ERVK -37 272 222 1 620 713 55 0 0 chr3 4649818 4649909 -154949874 - MMERVK10C-int LTR ERVK -7488 93 3 1 620 2515 82 185 3 chr3 4649909 4650277 -154949506 - RLTR10C LTR ERVK -1 435 1 1 620 235 239 103 63 chr3 4650317 4650540 -154949243 + L1M3 LINE L1 4245 4476 -1664 1 620 404 237 17 9 chr3 4650578 4650693 -154949090 + L1M3 LINE L1 5015 5130 -1010 1 620 364 24 0 0 chr3 4651130 4651172 -154948611 + (CA)n Simple_repeat Simple_repeat 2 43 0 1 620 459 194 11 33 chr3 4651172 4651353 -154948430 + (TA)n Simple_repeat Simple_repeat 1 177 0 1 620 240 314 44 32 chr3 4651380 4651538 -154948245 + L1M3 LINE L1 5361 5520 -651 1 620 21 57 0 0 chr3 4651670 4651705 -154948078 + AT_rich Low_complexity Low_complexity 1 35 0 1 620 238 367 50 0 chr3 4651750 4651930 -154947853 + L1M3 LINE L1 5696 5884 -299 1 620 1021 80 0 0 chr3 4651991 4652128 -154947655 + B1_Mus2 SINE Alu 2 138 -9 1 620 279 403 86 62 chr3 4653017 4653485 -154946298 - L3 LINE CR1 -982 3507 3029 1 620 21 57 0 0 chr3 4654096 4654131 -154945652 + AT_rich Low_complexity Low_complexity 1 35 0 1 620 1157 135 16 10 chr3 4654456 4654650 -154945133 - RLTR17 LTR ERVK -497 195 1 1 620 6504 186 64 60 chr3 4654650 4656470 -154943313 - RMER3D-int LTR ERVK 0 2842 1016 1 620 514 186 34 0 chr3 4656509 4656627 -154943156 - RMER3D-int LTR ERVK -2232 610 489 1 620 1382 322 36 22 chr3 4656629 4657213 -154942570 - Lx8 LINE L1 -651 6822 6231 1 620 237 250 161 0 chr3 4657543 4657667 -154942116 - L1M3 LINE L1 -3252 2888 2745 1 620 24 32 0 0 chr3 4657783 4657814 -154941969 + AT_rich Low_complexity Low_complexity 1 31 0 1 620 207 0 0 0 chr3 4658001 4658024 -154941759 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1 620 248 313 0 0 chr3 4658678 4658745 -154941038 + PB1D10 SINE Alu 27 93 -24 1 620 5283 109 46 27 chr3 4658898 4660447 -154939336 - L1VL2 LINE L1 -1789 1826 254 1 620 364 291 57 174 chr3 4660449 4660661 -154939122 - MER21B LTR ERV1 -672 191 5 1 620 605 211 16 24 chr3 4661413 4661539 -154938244 - B1_Mus2 SINE Alu 0 147 23 1 620 236 196 0 19 chr3 4661611 4661663 -154938120 + (CAAAG)n Simple_repeat Simple_repeat 3 53 0 1 620 1257 274 27 50 chr3 4661799 4662237 -154937546 - Lx9 LINE L1 -171 7473 7046 1 620 402 316 0 0 chr3 4662424 4662519 -154937264 + RSINE1 SINE B4 57 151 -14 1 620 24 0 0 0 chr3 4662547 4662571 -154937212 + AT_rich Low_complexity Low_complexity 1 24 0 1 620 1232 214 26 89 chr3 4663008 4663311 -154936472 - ORR1B1 LTR MaLR -70 324 41 1 620 311 271 14 14 chr3 4663329 4663400 -154936383 + RSINE1 SINE B4 83 153 -12 1 620 372 22 0 0 chr3 4664014 4664059 -154935724 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 620 38 0 0 0 chr3 4664117 4664155 -154935628 + AT_rich Low_complexity Low_complexity 1 38 0 1 620 570 347 77 66 chr3 4664692 4665071 -154934712 - MLT2B2 LTR ERVL -4 511 129 1 620 181 259 35 53 chr3 4665386 4665443 -154934340 + L4 LINE RTE 1728 1783 -246 1 620 6313 167 23 7 chr3 4665586 4666816 -154932967 - Lx2 LINE L1 -1440 4437 3188 1 620 6414 169 29 16 chr3 4666816 4668539 -154931244 + Lx2 LINE L1 4547 6295 -702 1 620 280 290 21 0 chr3 4668546 4668639 -154931144 - L1_Mur2 LINE L1 -2271 3606 3512 1 620 207 156 0 43 chr3 4668666 4668713 -154931070 + T-rich Low_complexity Low_complexity 1 45 0 1 620 3189 159 13 9 chr3 4668755 4669287 -154930496 - Lx3B LINE L1 -4 6969 6436 1 620 279 0 0 0 chr3 4669470 4669501 -154930282 + (CA)n Simple_repeat Simple_repeat 2 32 0 1 620 1758 128 28 3 chr3 4672423 4672713 -154927070 - L1_Mus3 LINE L1 -7 6631 6335 1 620 2869 91 12 2 chr3 4673021 4673427 -154926356 + L1Md_F2 LINE L1 6160 6569 -13 1 620 189 0 0 0 chr3 4673431 4673452 -154926331 + (GA)n Simple_repeat Simple_repeat 2 22 0 1 620 184 316 0 0 chr3 4673536 4673593 -154926190 - L2a LINE L2 -1 3425 3369 1 620 791 148 79 16 chr3 4674211 4674376 -154925407 + ORR1C1 LTR MaLR 170 336 -58 1 620 273 167 0 0 chr3 4674376 4674454 -154925329 + A-rich Low_complexity Low_complexity 1 78 0 1 620 276 45 90 0 chr3 4674548 4674615 -154925168 + (TTG)n Simple_repeat Simple_repeat 2 74 0 1 620 1089 93 0 0 chr3 4674617 4674757 -154925026 - B1_Mus2 SINE Alu -7 140 1 1 620 1471 245 71 0 chr3 4674769 4675136 -154924647 - MTB_Mm LTR MaLR -14 393 1 1 620 1037 283 112 3 chr3 4676583 4676888 -154922895 - RMER15 LTR ERVL 0 575 238 1 620 1674 242 72 0 chr3 4677027 4677427 -154922356 - Lx LINE L1 -118 6536 6108 1 620 9447 168 23 7 chr3 4677418 4679217 -154920566 - L1_Mur2 LINE L1 -421 5456 3628 1 620 666 313 65 97 chr3 4679276 4680036 -154919747 + MTC-int LTR MaLR 1 1172 -408 1 620 229 186 0 0 chr3 4680059 4680102 -154919681 + B1_Mm SINE Alu 105 147 0 1 620 233 118 0 19 chr3 4680102 4680154 -154919629 + (CAAA)n Simple_repeat Simple_repeat 1 51 0 1 620 1876 171 75 22 chr3 4680193 4680564 -154919219 - RLTR9D LTR ERVK -12 391 1 1 620 715 293 116 55 chr3 4680564 4680906 -154918877 + MTC-int LTR MaLR 882 1247 -11 1 620 1372 250 42 15 chr3 4681010 4681513 -154918270 - Lx9 LINE L1 -1523 6121 5555 1 620 23 101 0 0 chr3 4681538 4681617 -154918166 + AT_rich Low_complexity Low_complexity 1 79 0 1 620 1477 154 105 4 chr3 4681639 4681909 -154917874 - RLTR9A2 LTR ERVK -79 358 1 1 620 2898 151 14 7 chr3 4682009 4682510 -154917273 - RLTR1C LTR ERV1 0 507 1 1 620 499 242 173 14 chr3 4682660 4682874 -154916909 - L1_Mur3 LINE L1 -32 5848 5601 1 620 476 297 5 64 chr3 4682872 4683059 -154916724 + Lx9 LINE L1 7012 7187 -457 1 620 264 309 21 31 chr3 4683230 4683327 -154916456 + Lx8 LINE L1 7227 7322 -151 1 620 2254 79 35 3 chr3 4683331 4683650 -154916133 - MT2C_Mm LTR ERVL 0 475 147 1 620 814 162 7 0 chr3 4683650 4683786 -154915997 - MERVL_2A-int LTR ERVL -1377 4384 4248 2 620 327 306 92 24 chr3 4683940 4684191 -154915592 + L1MC3 LINE L1 7496 7763 -22 2 620 3965 140 57 3 chr3 4684994 4685644 -154914139 - Lx LINE L1 -8 6646 5962 2 620 271 365 28 28 chr3 4686720 4686827 -154912956 - PB1D10 SINE Alu -1 116 10 2 620 238 209 0 0 chr3 4686825 4686868 -154912915 - ORR1E LTR MaLR -46 313 271 2 620 29 28 0 0 chr3 4687306 4687342 -154912441 + AT_rich Low_complexity Low_complexity 1 36 0 2 620 1274 279 8 13 chr3 4687738 4688094 -154911689 - Lx6 LINE L1 -566 6894 6455 2 620 3031 45 45 5 chr3 4688094 4688475 -154911308 - MTA_Mm LTR MaLR 0 396 1 2 620 1274 295 102 12 chr3 4688475 4688881 -154910902 - Lx6 LINE L1 -790 6670 5987 2 620 1430 200 25 31 chr3 4688884 4689283 -154910500 + Lx6 LINE L1 5511 5909 -1551 2 620 212 149 20 50 chr3 4690157 4690256 -154909527 + (TA)n Simple_repeat Simple_repeat 1 96 0 2 620 762 231 196 13 chr3 4690526 4690564 -154909219 + Lx6 LINE L1 6845 6882 -578 2 620 492 18 0 0 chr3 4690564 4690621 -154909162 + (GA)n Simple_repeat Simple_repeat 2 58 0 2 620 762 231 196 13 chr3 4690621 4690806 -154908977 + Lx6 LINE L1 6883 7108 -352 2 620 180 77 0 0 chr3 4690996 4691022 -154908761 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 2 620 825 62 9 0 chr3 4691026 4691139 -154908644 - B1_Mus2 SINE Alu 0 147 34 2 620 296 207 65 109 chr3 4691068 4691160 -154908623 - RLTR25B LTR ERVK -519 509 422 2 620 453 182 79 8 chr3 4691182 4691309 -154908474 + Lx6 LINE L1 7325 7460 0 2 620 22 35 0 0 chr3 4691572 4691601 -154908182 + AT_rich Low_complexity Low_complexity 1 29 0 2 620 22 0 0 0 chr3 4692335 4692357 -154907426 + AT_rich Low_complexity Low_complexity 1 22 0 2 620 1333 199 153 88 chr3 4693929 4694348 -154905435 - RLTR41 LTR ERV1 0 446 1 2 620 26 0 0 0 chr3 4694597 4694623 -154905160 + AT_rich Low_complexity Low_complexity 1 26 0 2 620 495 0 0 0 chr3 4694665 4694720 -154905063 + (TA)n Simple_repeat Simple_repeat 2 56 0 2 620 183 42 0 0 chr3 4694720 4694744 -154905039 + (CAA)n Simple_repeat Simple_repeat 1 24 0 2 620 773 347 102 11 chr3 4695724 4696167 -154903616 - Lx8 LINE L1 -156 7317 6835 2 620 2635 279 93 19 chr3 4696160 4697195 -154902588 + Lx7 LINE L1 303 1422 -4458 2 620 544 129 20 0 chr3 4697242 4697343 -154902440 + (GAAA)n Simple_repeat Simple_repeat 2 104 0 2 620 876 147 0 0 chr3 4697346 4697496 -154902287 + (GGGGA)n Simple_repeat Simple_repeat 4 153 0 2 620 401 292 0 22 chr3 4697453 4697635 -154902148 + G-rich Low_complexity Low_complexity 3 180 0 2 620 319 45 0 145 chr3 4697636 4697767 -154902016 + GA-rich Low_complexity Low_complexity 4 115 0 2 620 444 82 0 0 chr3 4697767 4697828 -154901955 + (GAGAA)n Simple_repeat Simple_repeat 4 64 0 2 620 303 241 0 0 chr3 4697828 4697907 -154901876 + Lx7 LINE L1 3047 3125 -2755 2 620 8085 39 20 1 chr3 4697926 4699309 -154900474 - L1Md_F3 LINE L1 -1 6583 5170 2 620 7083 201 80 43 chr3 4699309 4699526 -154900257 + Lx7 LINE L1 3132 3354 -2526 2 620 1044 109 0 0 chr3 4699526 4699673 -154900110 + B1_Mus1 SINE Alu 2 148 0 2 620 7083 201 80 43 chr3 4699673 4699815 -154899968 + Lx7 LINE L1 3355 3486 -2394 2 620 381 43 0 0 chr3 4699815 4699862 -154899921 + (GA)n Simple_repeat Simple_repeat 2 48 0 2 620 7083 201 80 43 chr3 4699862 4701046 -154898737 + Lx7 LINE L1 3487 4739 -1141 2 620 978 105 0 0 chr3 4701046 4701179 -154898604 + B1_Mus1 SINE Alu 3 135 -13 2 620 224 30 0 29 chr3 4701179 4701213 -154898570 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 2 620 7083 201 80 43 chr3 4701213 4701316 -154898467 + Lx7 LINE L1 4740 4823 -1057 2 620 921 104 0 0 chr3 4701316 4701451 -154898332 + (GAAA)n Simple_repeat Simple_repeat 2 136 0 2 620 7083 201 80 43 chr3 4701451 4701893 -154897890 + Lx7 LINE L1 4824 5298 -582 2 620 2406 199 2 7 chr3 4701893 4702314 -154897469 + MTC LTR MaLR 1 419 -2 2 620 4313 221 46 19 chr3 4702314 4703810 -154895973 + Lx7 LINE L1 5300 6843 -853 2 620 722 42 0 11 chr3 4703821 4703916 -154895867 + (TCCC)n Simple_repeat Simple_repeat 4 97 0 2 620 825 199 113 13 chr3 4703937 4704166 -154895617 + Lx7 LINE L1 7445 7696 0 2 620 26457 140 17 16 chr3 4704292 4710496 -154889287 - L1_Mus3 LINE L1 -3 6635 439 2 620 666 149 0 0 chr3 4710554 4710702 -154889081 + (GA)n Simple_repeat Simple_repeat 2 149 0 2 620 580 305 32 48 chr3 4710767 4711000 -154888783 - Lx8 LINE L1 -1146 6550 6328 2 620 28020 109 15 62 chr3 4711226 4716866 -154882917 + L1Md_F2 LINE L1 244 5585 -298 2 620 6835 107 2 8 chr3 4716867 4717865 -154881918 + L1Md_F2 LINE L1 5587 6578 -4 2 620 209 208 0 0 chr3 4717874 4717922 -154881861 + A-rich Low_complexity Low_complexity 1 48 0 2 620 238 132 0 36 chr3 4718150 4718205 -154881578 + CT-rich Low_complexity Low_complexity 4 56 0 2 620 22 70 0 0 chr3 4718220 4718263 -154881520 + AT_rich Low_complexity Low_complexity 1 43 0 2 77 2055 125 41 41 chr3 4718310 4718677 -154881106 - IAPLTR1_Mm LTR ERVK 0 367 1 2 621 41551 17 4 3 chr3 4718677 4725142 -154874641 - IAPEz-int LTR ERVK 0 6481 8 2 621 2074 125 41 41 chr3 4725142 4725509 -154874274 - IAPLTR1_Mm LTR ERVK 0 367 1 2 621 1513 274 26 3 chr3 4725509 4725857 -154873926 + ORR1D1 LTR MaLR 19 374 0 2 621 282 277 91 91 chr3 4725913 4726056 -154873727 - B1F SINE Alu 0 149 7 2 621 441 0 0 0 chr3 4726241 4726290 -154873493 + (TA)n Simple_repeat Simple_repeat 2 50 0 2 621 404 370 13 13 chr3 4726505 4726661 -154873122 - B3A SINE B2 -37 161 6 2 621 311 336 88 54 chr3 4726740 4726888 -154872895 + RSINE1 SINE B4 3 155 -10 2 621 2311 182 118 47 chr3 4726926 4727570 -154872213 + RMER6C LTR ERVK 1 690 0 2 621 591 300 38 42 chr3 4727617 4727878 -154871905 - Lx6 LINE L1 -1171 6289 6030 2 621 324 48 0 0 chr3 4728016 4728058 -154871725 + (TG)n Simple_repeat Simple_repeat 2 43 0 2 621 258 327 65 124 chr3 4728221 4728362 -154871421 - B4 SINE B4 -117 175 38 2 621 5318 79 1 12 chr3 4728362 4729089 -154870694 - L1Md_F2 LINE L1 -11 6571 5853 2 621 258 327 65 124 chr3 4729089 4729132 -154870651 - B4 SINE B4 -255 37 2 2 621 36 0 0 0 chr3 4729456 4729492 -154870291 + AT_rich Low_complexity Low_complexity 1 36 0 2 621 274 233 0 183 chr3 4729560 4729702 -154870081 - Lx7 LINE L1 -286 7410 7295 2 621 429 103 0 0 chr3 4730877 4730945 -154868838 + (TG)n Simple_repeat Simple_repeat 1 68 0 2 621 252 0 0 0 chr3 4733768 4733796 -154865987 + (GTTTG)n Simple_repeat Simple_repeat 2 29 0 2 621 345 47 0 0 chr3 4733800 4733843 -154865940 + (TTTTA)n Simple_repeat Simple_repeat 2 44 0 2 621 1188 193 5 5 chr3 4733943 4734167 -154865616 - URR1B DNA MER1_type -1 224 1 2 621 2297 269 30 98 chr3 4734314 4735265 -154864518 + RMER17B LTR ERVK 15 901 -57 2 621 802 75 0 0 chr3 4735412 4735518 -154864265 + B1_Mm SINE Alu 37 142 -5 2 621 185 59 0 56 chr3 4735553 4735589 -154864194 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 2 621 211 229 0 0 chr3 4735590 4735638 -154864145 + A-rich Low_complexity Low_complexity 1 48 0 2 621 4649 149 109 13 chr3 4736047 4736915 -154862868 + RMER17B LTR ERVK 3 954 -4 2 621 7649 100 8 74 chr3 4737332 4738587 -154861196 - Lx3_Mus LINE L1 0 7009 5838 2 621 1957 90 93 0 chr3 4738587 4738887 -154860896 + L1_Mur1 LINE L1 5353 5680 -206 2 621 275 27 0 26 chr3 4738887 4738925 -154860858 + RLTR9C LTR ERVK 1 37 -356 2 621 534 220 155 23 chr3 4738933 4739152 -154860631 + ETnERV2-int LTR ERVK 16 263 -3051 2 621 4528 147 65 32 chr3 4739253 4740237 -154859546 + ETnERV2-int LTR ERVK 1071 2086 -5320 2 621 4790 140 25 29 chr3 4740261 4741174 -154858609 + ETnERV2-int LTR ERVK 2496 3405 -4001 2 621 2704 85 30 8 chr3 4741174 4741567 -154858216 + RLTR13D1 LTR ERVK 249 650 -156 2 621 9555 121 34 25 chr3 4741567 4741670 -154858113 + ETnERV2-int LTR ERVK 3403 3509 -3897 2 621 1248 20 0 0 chr3 4741670 4741816 -154857967 + B1_Mm SINE Alu 2 147 0 2 621 9555 121 34 25 chr3 4741816 4742248 -154857535 + ETnERV2-int LTR ERVK 3510 3926 -3480 2 621 310 42 42 0 chr3 4742248 4742296 -154857487 + (TA)n Simple_repeat Simple_repeat 2 51 0 2 621 9555 121 34 25 chr3 4742296 4743340 -154856443 + ETnERV2-int LTR ERVK 3927 4997 -2409 2 621 1805 199 26 56 chr3 4743351 4744092 -154855691 + RMER16-int LTR ERVK 3529 4173 -1233 2 621 1214 170 23 19 chr3 4744127 4744391 -154855392 + ETnERV2-int LTR ERVK 6222 6429 -977 2 621 409 97 0 77 chr3 4744602 4744680 -154855103 + ETnERV2-int LTR ERVK 7331 7402 -4 2 621 1842 146 36 100 chr3 4744690 4745110 -154854673 + RLTR9C LTR ERVK 1 393 0 2 621 1413 44 17 0 chr3 4745110 4745291 -154854492 + Lx3_Mus LINE L1 5672 5855 -1154 2 621 372 351 9 0 chr3 4745516 4745630 -154854153 + MLT1A LTR MaLR 40 154 -220 2 621 287 285 103 44 chr3 4745646 4745782 -154854001 + MLT1A LTR MaLR 211 354 -36 2 621 31 44 0 0 chr3 4745948 4745993 -154853790 + AT_rich Low_complexity Low_complexity 1 45 0 2 621 24 77 0 0 chr3 4746786 4746838 -154852945 + AT_rich Low_complexity Low_complexity 1 52 0 2 621 7434 143 16 43 chr3 4746959 4747742 -154852041 - Lx3A LINE L1 -3 6978 6201 2 621 1853 137 94 97 chr3 4747742 4748218 -154851565 + IAPLTR2_Mm LTR ERVK 1 475 0 2 621 27256 123 19 18 chr3 4748218 4754224 -154845559 - Lx3A LINE L1 -781 6200 210 2 621 611 321 248 10 chr3 4754323 4754622 -154845161 + ORR1D2 LTR MaLR 1 370 0 2 621 351 0 0 0 chr3 4754737 4754776 -154845007 + (TG)n Simple_repeat Simple_repeat 1 39 0 2 621 414 0 0 0 chr3 4754776 4754821 -154844962 + (GA)n Simple_repeat Simple_repeat 1 46 0 2 621 570 281 10 148 chr3 4754884 4755080 -154844703 + B4 SINE B4 18 186 -106 2 621 338 352 34 14 chr3 4755108 4755255 -154844528 + RSINE1 SINE B4 1 150 -15 2 621 479 292 117 48 chr3 4755642 4756015 -154843768 - MTD LTR MaLR 0 419 3 2 621 273 83 0 0 chr3 4757802 4757838 -154841945 + U2 snRNA snRNA 1 36 -152 2 621 604 96 0 0 chr3 4757979 4758083 -154841700 - L1_Mus4 LINE L1 -4 6632 6529 2 621 2760 101 8 12 chr3 4758133 4758535 -154841248 - MTB LTR MaLR 0 400 1 2 621 235 231 0 58 chr3 4759790 4759859 -154839924 + A-rich Low_complexity Low_complexity 5 69 0 2 621 2251 160 21 49 chr3 4761345 4761773 -154838010 - RLTR1D LTR ERV1 -16 589 174 2 621 6875 103 39 12 chr3 4761774 4763680 -154836103 - MMVL30-int LTR ERV1 0 3698 1793 2 621 531 0 0 0 chr3 4763680 4763739 -154836044 + (TC)n Simple_repeat Simple_repeat 2 60 0 2 621 6845 91 15 7 chr3 4763739 4764024 -154835759 - MMVL30-int LTR ERV1 -1906 1792 1503 2 621 271 109 0 0 chr3 4764091 4764137 -154835646 - MMVL30-int LTR ERV1 -2197 1501 1456 2 621 495 97 21 11 chr3 4764179 4764273 -154835510 - MMVL30-int LTR ERV1 -2181 1118 1024 2 621 1093 128 38 41 chr3 4764451 4764717 -154835066 - MMVL30-int LTR ERV1 -2245 1453 1158 2 621 847 243 34 48 chr3 4765025 4765293 -154834490 - MMVL30-int LTR ERV1 -2528 771 508 2 621 1271 151 24 28 chr3 4765451 4765703 -154834080 - MMERVK10C-int LTR ERVK -10 7571 7321 2 621 253 333 24 30 chr3 4765832 4765996 -154833787 - MMERVK10C-int LTR ERVK -512 7069 6907 2 621 1766 314 30 37 chr3 4766496 4767728 -154832055 - MMERVK10C-int LTR ERVK -2104 5477 4255 2 621 2619 53 6 37 chr3 4767758 4768112 -154831671 + IAPEY2_LTR LTR ERVK 12 354 -3 2 621 7025 60 2 7 chr3 4768122 4769069 -154830714 + IAPEy-int LTR ERVK 6572 7513 0 2 621 2757 88 21 3 chr3 4769069 4769445 -154830338 + IAPEY_LTR LTR ERVK 1 383 -2 2 621 2339 309 36 38 chr3 4769452 4770996 -154828787 - MMERVK10C-int LTR ERVK -3321 4260 2720 2 621 340 219 0 30 chr3 4771317 4771416 -154828367 - MMERVK10C-int LTR ERVK -1143 844 749 2 621 373 32 8 0 chr3 4771547 4771600 -154828183 - MMERVK10C-int LTR ERVK -7314 267 163 2 621 1998 118 3 26 chr3 4771625 4771930 -154827853 - RLTR27 LTR ERVK 0 309 12 2 621 394 295 47 93 chr3 4771942 4772114 -154827669 + B3 SINE B2 32 195 0 2 621 893 111 0 20 chr3 4772413 4772431 -154827352 + Lx4A LINE L1 5740 5757 -1301 2 621 288 0 0 0 chr3 4772431 4772463 -154827320 + (TATG)n Simple_repeat Simple_repeat 2 33 0 3 621 6472 155 48 17 chr3 4772463 4773611 -154826172 - Lx4A LINE L1 0 7058 5875 2 621 893 111 0 20 chr3 4773611 4773738 -154826045 + Lx4A LINE L1 5758 5882 -1176 2 621 533 353 39 22 chr3 4773745 4774107 -154825676 - Lx8 LINE L1 -40 7433 7066 3 621 504 337 107 50 chr3 4774238 4774923 -154824860 + L1MEd LINE L1 612 1370 -4855 3 621 21 0 0 0 chr3 4777176 4777197 -154822586 + AT_rich Low_complexity Low_complexity 1 21 0 3 621 2511 77 0 32 chr3 4777213 4777560 -154822223 + ORR1A1 LTR MaLR 11 346 0 3 621 1139 302 117 10 chr3 4777856 4778241 -154821542 + Lx5 LINE L1 6608 7033 -17 3 621 203 220 20 0 chr3 4778241 4778291 -154821492 + (TAA)n Simple_repeat Simple_repeat 1 51 0 3 621 240 362 0 11 chr3 4778426 4778521 -154821262 + RMER15 LTR ERVL 303 396 -179 3 621 450 70 40 27 chr3 4778526 4778600 -154821183 + MusHAL1 LINE L1 1135 1209 -1503 3 621 1937 176 6 6 chr3 4778600 4778966 -154820817 + Lx LINE L1 6289 6654 0 3 621 238 231 45 15 chr3 4778974 4779040 -154820743 + RMER15 LTR ERVL 412 479 -96 3 621 496 65 38 38 chr3 4779064 4779144 -154820639 + MusHAL1 LINE L1 1135 1214 -1498 3 621 458 182 0 11 chr3 4779139 4779228 -154820555 + Lx LINE L1 6289 6376 -278 3 621 5298 54 5 0 chr3 4779670 4780335 -154819448 + L1Md_F3 LINE L1 5917 6584 0 3 621 520 255 35 55 chr3 4780353 4780537 -154819246 + ORR1C1 LTR MaLR 2 183 -201 3 621 522 0 0 0 chr3 4780537 4780595 -154819188 + (TG)n Simple_repeat Simple_repeat 2 59 0 3 621 520 289 68 80 chr3 4780595 4780696 -154819087 + ORR1C1 LTR MaLR 174 284 -86 3 621 203 167 0 0 chr3 4780696 4780732 -154819051 + CT-rich Low_complexity Low_complexity 1 36 0 3 621 694 206 141 27 chr3 4780737 4780922 -154818861 + ORR1C1 LTR MaLR 173 378 0 3 621 278 326 13 90 chr3 4781044 4781199 -154818584 + MLT1A LTR MaLR 16 158 -216 3 621 1367 154 34 11 chr3 4781829 4782091 -154817692 - Lx3B LINE L1 -8 6973 6706 3 621 2397 152 5 36 chr3 4782091 4782529 -154817254 - Lx3B LINE L1 -679 6294 5871 3 621 26 30 0 0 chr3 4782622 4782655 -154817128 + AT_rich Low_complexity Low_complexity 1 33 0 3 621 489 127 0 0 chr3 4782704 4782783 -154817000 + (TG)n Simple_repeat Simple_repeat 1 79 0 3 621 3932 140 15 15 chr3 4783952 4784605 -154815178 + Lx4A LINE L1 6399 7051 -7 3 621 423 0 0 0 chr3 4784605 4784652 -154815131 + (TAAAA)n Simple_repeat Simple_repeat 4 50 0 3 621 774 176 23 0 chr3 4785489 4785665 -154814118 + CT-rich Low_complexity Low_complexity 1 180 0 3 621 518 167 23 16 chr3 4785679 4785807 -154813976 + CT-rich Low_complexity Low_complexity 4 132 0 3 621 969 138 0 0 chr3 4785844 4785989 -154813794 - B1_Mus2 SINE Alu 0 147 3 3 621 250 26 0 49 chr3 4786581 4786622 -154813161 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 3 621 17779 83 12 6 chr3 4787421 4789589 -154810194 + L1_Mm LINE L1 3118 5307 -576 3 621 3200 56 2 2 chr3 4789589 4789985 -154809798 - MTA_Mm LTR MaLR 0 396 1 3 621 17779 83 12 6 chr3 4789985 4790270 -154809513 + L1_Mm LINE L1 5308 5586 -297 3 621 7524 74 2 6 chr3 4790270 4791258 -154808525 + L1Md_F2 LINE L1 5587 6570 -12 3 621 17779 83 12 6 chr3 4791258 4791283 -154808500 + L1_Mm LINE L1 5587 5612 -271 3 621 2442 96 191 3 chr3 4791687 4792054 -154807729 + RLTR10C LTR ERVK 1 436 0 3 621 237 338 119 8 chr3 4792253 4792387 -154807396 + L2 LINE L2 2304 2452 -967 3 621 359 41 20 0 chr3 4792506 4792555 -154807228 + (TC)n Simple_repeat Simple_repeat 1 50 0 3 621 23 54 0 0 chr3 4792580 4792617 -154807166 + AT_rich Low_complexity Low_complexity 1 37 0 3 621 366 280 70 0 chr3 4792617 4792717 -154807066 + B1_Mur2 SINE Alu 34 140 -9 3 621 297 0 0 0 chr3 4792977 4793010 -154806773 + (TG)n Simple_repeat Simple_repeat 2 34 0 3 621 5116 93 29 3 chr3 4793546 4794297 -154805486 + L1_Mus3 LINE L1 5863 6633 -5 3 621 213 298 0 0 chr3 4798924 4798981 -154800802 + (TATATG)n Simple_repeat Simple_repeat 3 59 0 3 621 622 53 32 0 chr3 4802408 4802502 -154797281 + (TTCC)n Simple_repeat Simple_repeat 2 98 0 3 621 225 0 0 0 chr3 4802504 4802529 -154797254 + (TC)n Simple_repeat Simple_repeat 2 26 0 3 621 13902 162 37 16 chr3 4802571 4806126 -154793657 - Lx LINE L1 -11 6643 3013 3 621 883 297 68 52 chr3 4806725 4807258 -154792525 - Charlie1a DNA MER1_type -227 1228 688 3 621 209 208 0 0 chr3 4807672 4807720 -154792063 + A-rich Low_complexity Low_complexity 1 48 0 3 621 953 161 97 0 chr3 4807815 4808001 -154791782 + L1_Mur1 LINE L1 4425 4628 -1258 3 621 5945 173 6 33 chr3 4808003 4809193 -154790590 - L1_Mur2 LINE L1 -784 5093 3936 3 621 10969 110 68 13 chr3 4809213 4811122 -154788661 - L1VL4 LINE L1 -644 2915 902 3 621 560 75 11 0 chr3 4811126 4811219 -154788564 - L1_Mus3 LINE L1 0 6638 6545 3 621 596 95 19 0 chr3 4811219 4811324 -154788459 + MusHAL1 LINE L1 589 695 -2659 3 621 321 26 0 0 chr3 4811325 4811363 -154788420 + L1_Mus3 LINE L1 6477 6514 -124 3 621 4335 149 48 18 chr3 4811378 4812120 -154787663 - L1VL4 LINE L1 -5523 779 33 3 621 423 38 0 0 chr3 4812146 4812199 -154787584 + (TC)n Simple_repeat Simple_repeat 2 54 0 3 621 236 301 36 12 chr3 4812215 4812318 -154787465 - MIRb SINE MIR -146 122 12 3 621 24 0 0 0 chr3 4812755 4812779 -154787004 + AT_rich Low_complexity Low_complexity 1 24 0 3 621 288 0 0 0 chr3 4815190 4815222 -154784561 + (CA)n Simple_repeat Simple_repeat 2 33 0 3 621 828 300 41 39 chr3 4815317 4815785 -154783998 - L1_Rod LINE L1 -56 5824 5391 3 621 1114 82 7 0 chr3 4815807 4815953 -154783830 - B1_Mm SINE Alu 0 147 1 3 621 3574 105 62 2 chr3 4815993 4816538 -154783245 - L1_Mus3 LINE L1 -2 6636 6059 3 621 423 229 25 0 chr3 4816590 4816708 -154783075 - Lx9 LINE L1 -31 7613 7493 3 621 208 122 61 0 chr3 4816808 4816857 -154782926 + T-rich Low_complexity Low_complexity 3 54 0 3 621 2465 150 57 0 chr3 4817619 4818122 -154781661 + L1VL4 LINE L1 524 1052 -2507 3 621 36476 55 14 5 chr3 4818122 4823769 -154776014 + L1Md_T LINE L1 99 5586 -297 3 621 7996 56 0 0 chr3 4823769 4824765 -154775018 + L1Md_T LINE L1 5587 6582 0 3 621 306 0 0 0 chr3 4824813 4824847 -154774936 + (A)n Simple_repeat Simple_repeat 1 34 0 3 621 16598 184 42 14 chr3 4824848 4825427 -154774356 + Lx2B LINE L1 1399 1984 -3902 3 621 447 19 0 0 chr3 4825427 4825479 -154774304 + (GA)n Simple_repeat Simple_repeat 1 52 0 3 621 16598 184 42 14 chr3 4825479 4827899 -154771884 + Lx2B LINE L1 1985 4479 -1407 3 621 3494 56 77 11 chr3 4827899 4828368 -154771415 + L1_Mus1 LINE L1 6067 6566 -1 3 621 16598 184 42 14 chr3 4828368 4828683 -154771100 + Lx2B LINE L1 4480 4810 -1076 3 621 423 0 0 0 chr3 4828683 4828730 -154771053 + (CA)n Simple_repeat Simple_repeat 1 47 0 3 621 16598 184 42 14 chr3 4828730 4829054 -154770729 + Lx2B LINE L1 4811 5138 -748 3 621 3605 165 117 8 chr3 4829046 4829792 -154769991 - L1_Mm LINE L1 -745 5138 4312 3 621 662 103 0 17 chr3 4829828 4829946 -154769837 - L1_Mus2 LINE L1 -1 6565 6450 3 621 499 193 0 9 chr3 4829975 4830090 -154769693 + L1_Mus3 LINE L1 6519 6632 -6 3 621 7102 169 48 7 chr3 4830111 4831746 -154768037 + Lx2B LINE L1 5126 6824 -176 3 621 690 103 0 0 chr3 4831845 4831942 -154767841 + B2_Mm2 SINE B2 1 97 -98 3 621 247 195 81 47 chr3 4832425 4832511 -154767272 + RMER15 LTR ERVL 39 127 -448 3 621 540 306 115 63 chr3 4832556 4832842 -154766941 + RMER15 LTR ERVL 275 575 0 3 621 727 344 8 16 chr3 4833192 4833449 -154766334 + MTEa LTR MaLR 20 274 -105 3 621 426 130 26 0 chr3 4833458 4833535 -154766248 + Lx5 LINE L1 6844 6922 -128 3 621 322 309 18 26 chr3 4834407 4834520 -154765263 + PB1D10 SINE Alu 6 117 0 3 621 249 345 0 8 chr3 4834756 4834876 -154764907 - Charlie18a DNA MER1_type 0 342 224 3 621 2227 86 3 32 chr3 4835851 4836164 -154763619 - L1_Mus2 LINE L1 -187 6379 6076 3 621 1060 74 73 6 chr3 4836164 4836328 -154763455 + L1_Mus2 LINE L1 6386 6560 -6 3 621 21 0 0 0 chr3 4836797 4836818 -154762965 + AT_rich Low_complexity Low_complexity 1 21 0 3 621 218 265 132 0 chr3 4838729 4838797 -154760986 - ID4_ SINE ID -6 77 1 3 621 1429 278 30 7 chr3 4839300 4839706 -154760077 + Lx7 LINE L1 6769 7183 -513 3 621 302 182 26 13 chr3 4839720 4839798 -154759985 + Lx7 LINE L1 7617 7695 -1 3 621 210 238 0 0 chr3 4841209 4841251 -154758532 + (TG)n Simple_repeat Simple_repeat 1 42 0 3 621 410 319 64 23 chr3 4841292 4841465 -154758318 - B4A SINE B4 -4 288 109 3 621 27 49 0 0 chr3 4841855 4841896 -154757887 + AT_rich Low_complexity Low_complexity 1 41 0 3 621 544 316 65 14 chr3 4842195 4842365 -154757418 + MTE2a LTR MaLR 207 369 -5 3 621 704 339 55 39 chr3 4842398 4842705 -154757078 + MTE-int LTR MaLR 64 375 -1205 3 621 1953 319 89 26 chr3 4842770 4843605 -154756178 + MTE-int LTR MaLR 567 1580 0 3 621 562 368 139 4 chr3 4843630 4843911 -154755872 + MTE2a LTR MaLR 61 379 0 3 621 398 269 65 0 chr3 4844016 4844124 -154755659 + MER58B DNA MER1_type 187 301 -40 3 621 22921 130 26 25 chr3 4844524 4846282 -154753501 - L1_Mus3 LINE L1 -1 6637 4863 3 621 1140 68 0 0 chr3 4846282 4846428 -154753355 + B1_Mus2 SINE Alu 2 147 0 3 77 22921 166 35 41 chr3 4846428 4850974 -154748809 - L1_Mus3 LINE L1 -1021 4862 361 3 622 5277 101 11 95 chr3 4851294 4851740 -154748043 + Lx3_Mus LINE L1 6164 6583 -426 3 622 1148 88 0 0 chr3 4851740 4851887 -154747896 + B1_Mm SINE Alu 1 147 0 3 622 5277 101 11 95 chr3 4851887 4852362 -154747421 + Lx3_Mus LINE L1 6584 7007 -2 3 622 194 136 23 0 chr3 4853398 4853442 -154746341 + CT-rich Low_complexity Low_complexity 2 46 0 3 622 2523 87 90 0 chr3 4853645 4854012 -154745771 - MTB LTR MaLR 0 400 1 3 622 422 18 18 0 chr3 4855145 4855200 -154744583 + (TG)n Simple_repeat Simple_repeat 1 56 0 3 622 29 28 0 0 chr3 4855838 4855874 -154743909 + AT_rich Low_complexity Low_complexity 1 36 0 3 622 29 47 0 0 chr3 4856202 4856245 -154743538 + AT_rich Low_complexity Low_complexity 1 43 0 3 622 245 327 157 9 chr3 4856849 4856957 -154742826 + RSINE1 SINE B4 7 130 -35 3 622 869 277 0 109 chr3 4857107 4857427 -154742356 + L1VL1 LINE L1 220 504 -5918 3 622 17737 141 128 8 chr3 4857422 4861458 -154738325 + L1Md_F2 LINE L1 352 5427 -459 3 622 1820 125 28 22 chr3 4861458 4861778 -154738005 - RLTRETN_Mm LTR ERVK 0 322 1 3 622 17737 50 3 1 chr3 4861778 4862411 -154737372 + L1Md_F2 LINE L1 5427 6055 -527 3 622 1806 47 4 8 chr3 4862411 4862646 -154737137 + L1Md_F2 LINE L1 6346 6579 -3 3 622 1522 47 11 0 chr3 4862667 4862858 -154736925 + L1Md_F2 LINE L1 5393 5585 -298 3 622 7281 80 9 3 chr3 4862859 4863849 -154735934 + L1Md_F2 LINE L1 5587 6582 0 3 622 2110 73 4 0 chr3 4863849 4864121 -154735662 + L1Md_F2 LINE L1 5314 5586 -297 3 622 6947 88 25 9 chr3 4864122 4865101 -154734682 + L1Md_F2 LINE L1 5588 6581 -1 3 622 586 227 139 24 chr3 4865736 4865944 -154733839 - RMER1C Other Other -2 1340 1109 3 622 318 319 12 83 chr3 4866119 4866372 -154733411 - L1MA4 LINE L1 -333 5958 5724 4 622 438 287 19 0 chr3 4866858 4866966 -154732817 - ID_B1 SINE B4 -35 189 80 4 622 275 104 21 0 chr3 4866966 4867014 -154732769 + (CTA)n Simple_repeat Simple_repeat 2 50 0 4 622 328 289 68 23 chr3 4867018 4867195 -154732588 - Lx7 LINE L1 0 7696 7512 4 622 291 252 56 0 chr3 4867222 4867329 -154732454 - Lx7 LINE L1 -280 7416 7304 4 622 504 113 46 7 chr3 4867534 4867694 -154732089 + (TAGA)n Simple_repeat Simple_repeat 1 166 0 4 622 1084 145 5 5 chr3 4868146 4868333 -154731450 + Lx LINE L1 6461 6647 -7 4 622 1102 290 88 9 chr3 4868620 4868961 -154730822 + MTD LTR MaLR 49 416 -3 4 622 4527 132 47 24 chr3 4868962 4870210 -154729573 + L1VL1 LINE L1 203 1484 -2214 4 622 30476 99 12 3 chr3 4870214 4875409 -154724374 + L1Md_F2 LINE L1 338 5585 -298 4 622 7068 95 4 2 chr3 4875410 4876403 -154723380 + L1Md_F2 LINE L1 5587 6581 -1 4 622 23723 142 16 9 chr3 4876424 4881269 -154718514 + L1_Mus2 LINE L1 1686 6565 -1 4 622 2999 165 25 61 chr3 4881295 4881948 -154717835 + L1_Mm LINE L1 4427 5055 -828 4 622 28094 136 14 9 chr3 4881925 4887923 -154711860 + L1_Mus1 LINE L1 535 6567 0 4 622 8073 142 5 19 chr3 4887946 4889436 -154710347 + L1_Mm LINE L1 2913 4382 -1501 4 622 233 276 0 7 chr3 4889577 4889723 -154710060 + (TG)n Simple_repeat Simple_repeat 2 146 0 4 622 279 38 37 37 chr3 4889845 4889899 -154709884 + (CAAAA)n Simple_repeat Simple_repeat 2 55 0 4 622 346 206 20 10 chr3 4891561 4891659 -154708124 + (TATG)n Simple_repeat Simple_repeat 2 100 0 4 622 393 284 71 43 chr3 4891691 4891831 -154707952 - B4 SINE B4 -1 291 148 4 622 1760 184 19 65 chr3 4891861 4892292 -154707491 - RLTR9F LTR ERVK -4 411 1 4 622 377 99 68 40 chr3 4892292 4892366 -154707417 - ETnERV2-int LTR ERVK 0 7406 7331 4 622 1571 42 0 0 chr3 4892433 4892625 -154707158 - L1Md_T LINE L1 0 6582 6391 4 622 2711 21 0 0 chr3 4892625 4892954 -154706829 + L1Md_A LINE L1 5625 5953 -629 4 622 14419 164 43 30 chr3 4893113 4897191 -154702592 - ETnERV2-int LTR ERVK -1230 4176 1376 4 622 530 227 97 0 chr3 4897191 4897345 -154702438 - RCHARR1 DNA MER1_type -324 650 482 4 622 11054 102 10 3 chr3 4897352 4899718 -154700065 - L1_Mus1 LINE L1 -1 6566 4187 4 622 667 361 30 5 chr3 4899719 4900087 -154699696 - RCHARR1 DNA MER1_type -477 497 121 4 622 1398 77 0 0 chr3 4900094 4900275 -154699508 - L1_Mus1 LINE L1 -2 6565 6385 4 622 815 47 46 23 chr3 4900275 4900405 -154699378 + L1_Mus1 LINE L1 5948 6080 -487 4 622 230 345 0 22 chr3 4900407 4900496 -154699287 - RCHARR1 DNA MER1_type -849 125 39 4 622 384 22 0 0 chr3 4900800 4900845 -154698938 + (TAG)n Simple_repeat Simple_repeat 1 45 0 4 622 405 0 0 0 chr3 4901317 4901362 -154698421 + (TG)n Simple_repeat Simple_repeat 2 46 0 4 622 34 72 0 0 chr3 4902399 4902468 -154697315 + AT_rich Low_complexity Low_complexity 1 69 0 4 622 375 23 0 0 chr3 4902917 4902961 -154696822 + (TA)n Simple_repeat Simple_repeat 2 45 0 4 622 21 57 0 0 chr3 4902992 4903027 -154696756 + AT_rich Low_complexity Low_complexity 1 35 0 4 622 1640 92 8 20 chr3 4903854 4904108 -154695675 + L1_Mus3 LINE L1 6383 6633 -5 4 622 1315 93 0 30 chr3 4904289 4904489 -154695294 + B2_Mm2 SINE B2 2 195 0 4 622 360 221 144 0 chr3 4904801 4904905 -154694878 - Lx5 LINE L1 0 7050 6932 4 622 423 314 34 0 chr3 4906579 4906697 -154693086 + MTEa LTR MaLR 103 224 -155 4 622 1473 119 0 60 chr3 4906798 4907067 -154692716 + Lx LINE L1 6402 6654 0 4 622 412 213 9 117 chr3 4907106 4907319 -154692464 + Lx9 LINE L1 7451 7640 -4 4 622 326 115 0 0 chr3 4907341 4907393 -154692390 - U2 snRNA snRNA -136 52 1 4 622 597 294 49 36 chr3 4907717 4908045 -154691738 + RLTR45 LTR ERVK 103 482 0 4 622 540 45 0 0 chr3 4908717 4908784 -154690999 + (CA)n Simple_repeat Simple_repeat 2 68 0 4 622 661 306 75 0 chr3 4908874 4909047 -154690736 + B3 SINE B2 2 187 -29 4 622 2470 186 0 44 chr3 4909049 4909549 -154690234 - L1VL1 LINE L1 -5752 670 193 4 622 1027 95 0 0 chr3 4909549 4909740 -154690043 - MusHAL1 LINE L1 -2547 806 617 4 622 1524 152 30 0 chr3 4909748 4910045 -154689738 + MusHAL1 LINE L1 1556 1861 -851 4 622 789 227 81 83 chr3 4910045 4910495 -154689288 - LTRIS3 LTR ERV1 0 512 1 4 622 919 215 62 5 chr3 4910495 4910719 -154689064 - MuRRS-int LTR ERV1 0 4690 4454 4 622 2715 225 23 38 chr3 4910798 4911549 -154688234 - MuRRS4-int LTR ERV1 -236 4454 3808 4 622 4391 241 34 29 chr3 4911547 4913763 -154686020 - MuRRS4-int LTR ERV1 -2044 2646 495 4 622 5602 88 15 15 chr3 4913763 4914571 -154685212 - RLTR13C2 LTR ERVK 0 808 1 4 622 1012 271 96 60 chr3 4914574 4915041 -154684742 - MuRRS4-int LTR ERV1 -4566 497 14 4 622 868 200 119 67 chr3 4915210 4915624 -154684159 - LTRIS5 LTR ERV1 0 512 1 4 622 15434 139 17 9 chr3 4915624 4919184 -154680599 + L1_Mus3 LINE L1 3062 6638 0 4 622 12366 111 19 7 chr3 4919179 4920423 -154679360 + MusHAL1 LINE L1 144 1412 -1300 4 622 3297 76 19 83 chr3 4920423 4920938 -154678845 + RLTR45 LTR ERVK 1 482 0 4 622 12366 111 19 7 chr3 4920938 4921803 -154677980 + MusHAL1 LINE L1 1413 2279 -433 4 622 495 0 0 0 chr3 4921803 4921858 -154677925 + (TAA)n Simple_repeat Simple_repeat 2 56 0 4 622 1965 304 72 33 chr3 4921858 4922083 -154677700 + L1M2 LINE L1 3552 3797 -2346 4 622 3123 140 123 116 chr3 4922093 4922948 -154676835 + RMER17D LTR ERVK 26 886 -3 4 622 1767 123 141 0 chr3 4922994 4923320 -154676463 - BGLII_Mus LTR ERVK 0 422 51 4 622 10552 189 9 19 chr3 4923332 4923443 -154676340 + Lx2A1 LINE L1 3487 3597 -2280 4 622 1020 122 0 0 chr3 4923443 4923582 -154676201 - B1_Mus1 SINE Alu -6 142 4 4 622 10552 189 9 19 chr3 4923582 4925794 -154673989 + Lx2A1 LINE L1 3598 5787 -90 4 622 29269 81 3 2 chr3 4925799 4930896 -154668887 + L1Md_F2 LINE L1 392 5496 -387 4 622 10001 44 10 3 chr3 4930912 4932181 -154667602 - ETnERV-int LTR ERVK -2036 1278 1 4 622 1781 115 27 66 chr3 4932181 4932516 -154667267 - RLTRETN_Mm LTR ERVK 0 322 1 4 622 773 42 0 0 chr3 4932516 4932611 -154667172 + L1Md_F2 LINE L1 5491 5585 -298 4 622 8095 40 4 1 chr3 4932612 4933605 -154666178 + L1Md_F2 LINE L1 5587 6582 0 4 622 2240 182 16 59 chr3 4933605 4934165 -154665618 + Lx2A1 LINE L1 5788 6323 -685 4 622 1510 148 2 43 chr3 4934570 4934923 -154664860 + Lx2A1 LINE L1 6318 6626 -382 4 622 374 206 0 11 chr3 4934925 4935018 -154664765 + Lx2A1 LINE L1 6899 6990 -18 4 622 21 36 0 0 chr3 4935794 4935822 -154663961 + AT_rich Low_complexity Low_complexity 1 28 0 4 622 634 84 103 0 chr3 4936790 4936897 -154662886 - L1_Mus2 LINE L1 -397 6169 6052 4 622 2920 83 0 12 chr3 4936897 4937298 -154662485 + L1_Mus2 LINE L1 6171 6566 0 4 622 442 329 60 43 chr3 4937722 4937954 -154661829 + RMER15 LTR ERVL 322 557 -18 4 622 1004 101 14 0 chr3 4938305 4938444 -154661339 + B1_Mm SINE Alu 1 141 -6 4 622 182 350 0 0 chr3 4938931 4938971 -154660812 + L3 LINE CR1 2935 2974 -1515 4 622 25 31 0 0 chr3 4939151 4939183 -154660600 + AT_rich Low_complexity Low_complexity 1 32 0 4 622 24 32 0 0 chr3 4939267 4939298 -154660485 + AT_rich Low_complexity Low_complexity 1 31 0 4 622 9882 155 11 13 chr3 4939385 4942160 -154657623 - L1_Mus4 LINE L1 -7 6629 3865 4 622 468 0 0 0 chr3 4942160 4942212 -154657571 + (TG)n Simple_repeat Simple_repeat 2 53 0 4 622 9882 180 8 19 chr3 4942212 4942229 -154657554 - L1_Mus4 LINE L1 -2019 3864 3848 4 622 186 143 0 0 chr3 4942231 4942266 -154657517 + (TGG)n Simple_repeat Simple_repeat 3 37 0 4 622 186 43 0 0 chr3 4942265 4942288 -154657495 + (TTTTG)n Simple_repeat Simple_repeat 1 23 0 4 622 797 129 67 22 chr3 4942289 4942424 -154657359 - B1_Mus1 SINE Alu -1 147 7 4 622 516 136 0 72 chr3 4942430 4942541 -154657242 - L1_Mur2 LINE L1 -2016 3861 3759 4 622 2875 216 70 61 chr3 4942586 4943427 -154656356 - RMER17D LTR ERVK -15 874 26 4 622 27 62 0 0 chr3 4943445 4943493 -154656290 + AT_rich Low_complexity Low_complexity 1 48 0 4 622 438 128 202 0 chr3 4943530 4943624 -154656159 - RCHARR1 DNA MER1_type -483 491 379 4 622 3378 68 28 7 chr3 4943627 4944086 -154655697 - L1Md_F2 LINE L1 0 6582 6114 4 622 11565 152 8 48 chr3 4944086 4944592 -154655191 - L1VL2 LINE L1 -444 3171 2691 4 622 6255 138 45 9 chr3 4944592 4945639 -154654144 - Lx3A LINE L1 -7 6974 5890 4 622 11565 179 40 38 chr3 4945639 4948258 -154651525 - L1VL2 LINE L1 -925 2690 45 4 622 4957 176 21 9 chr3 4948267 4949168 -154650615 - Lx2B LINE L1 -5 6995 6084 4 622 1347 130 14 5 chr3 4949168 4949385 -154650398 + Lx2B LINE L1 5775 5993 -1007 4 622 720 35 0 0 chr3 4950080 4950167 -154649616 + (GA)n Simple_repeat Simple_repeat 1 87 0 4 622 180 194 0 0 chr3 4950322 4950353 -154649430 - L2 LINE L2 -556 2863 2833 4 622 238 377 72 20 chr3 4950509 4950704 -154649079 - MLT1A LTR MaLR -169 205 1 4 622 947 314 62 45 chr3 4950815 4951299 -154648484 + RCHARR1 DNA MER1_type 9 500 -474 4 622 684 242 8 0 chr3 4951320 4951444 -154648339 + B1_Mur2 SINE Alu 2 126 -23 4 622 183 196 29 10 chr3 4951462 4951565 -154648218 + (TAGA)n Simple_repeat Simple_repeat 4 108 0 4 622 420 118 0 0 chr3 4951581 4951649 -154648134 + (TA)n Simple_repeat Simple_repeat 2 69 0 4 622 270 0 0 0 chr3 4951649 4951679 -154648104 + (TG)n Simple_repeat Simple_repeat 2 31 0 4 622 402 21 0 0 chr3 4951721 4951768 -154648015 + (CATATA)n Simple_repeat Simple_repeat 5 51 0 4 622 516 244 112 66 chr3 4951777 4951974 -154647809 - RMER6A LTR ERVK 0 720 515 4 622 804 222 138 13 chr3 4951957 4952181 -154647602 - RMER6A LTR ERVK -87 669 418 4 622 259 262 0 0 chr3 4952831 4952911 -154646872 + L1MA6 LINE L1 5934 6013 -287 4 622 746 270 26 61 chr3 4953251 4953480 -154646303 + ID_B1 SINE B4 2 222 -2 4 622 21 0 0 0 chr3 4953509 4953530 -154646253 + AT_rich Low_complexity Low_complexity 1 21 0 4 622 479 17 0 16 chr3 4953652 4953713 -154646070 + (TA)n Simple_repeat Simple_repeat 2 61 0 4 622 24 0 0 0 chr3 4953770 4953794 -154645989 + AT_rich Low_complexity Low_complexity 1 24 0 4 622 5355 96 16 5 chr3 4954079 4954846 -154644937 + L1_Mus2 LINE L1 5786 6560 -6 4 622 189 107 0 0 chr3 4955004 4955032 -154644751 + (CATATA)n Simple_repeat Simple_repeat 3 30 0 4 622 281 26 26 0 chr3 4955032 4955070 -154644713 + (TG)n Simple_repeat Simple_repeat 2 40 0 4 622 203 329 91 79 chr3 4955121 4955286 -154644497 + L4 LINE RTE 1444 1610 -419 4 622 904 243 50 0 chr3 4955348 4955570 -154644213 - Lx6 LINE L1 -939 6521 6289 4 622 756 309 25 14 chr3 4956714 4957069 -154642714 + Lx7 LINE L1 5625 5983 -1713 4 622 383 98 16 0 chr3 4958247 4958308 -154641475 + (TA)n Simple_repeat Simple_repeat 1 62 0 4 622 854 298 115 57 chr3 4958323 4958960 -154640823 - Lx9 LINE L1 -15 7629 6956 4 622 27176 177 29 57 chr3 4959081 4960977 -154638806 + L1_Mus1 LINE L1 217 2070 -3813 5 622 381 22 0 0 chr3 4960977 4961023 -154638760 + (CAA)n Simple_repeat Simple_repeat 2 47 0 5 622 27176 126 13 4 chr3 4961023 4965475 -154634308 + L1_Mus1 LINE L1 2071 6566 -1 5 622 306 0 0 0 chr3 4965503 4965537 -154634246 + (TA)n Simple_repeat Simple_repeat 2 35 0 5 622 591 112 0 0 chr3 4965588 4965677 -154634106 + (TTCC)n Simple_repeat Simple_repeat 1 89 0 5 622 1143 71 0 0 chr3 4965679 4965833 -154633950 + (TTTC)n Simple_repeat Simple_repeat 1 154 0 5 622 4016 131 5 13 chr3 4965835 4966464 -154633319 - Lx3A LINE L1 -16 6965 6342 5 622 397 95 36 0 chr3 4966471 4966555 -154633228 + (TTTTTG)n Simple_repeat Simple_repeat 2 88 0 5 622 528 118 172 0 chr3 4966555 4966648 -154633135 - Lx3A LINE L1 -633 6348 6240 5 622 195 100 0 0 chr3 4966826 4966856 -154632927 + (A)n Simple_repeat Simple_repeat 1 30 0 5 622 619 41 0 0 chr3 4967862 4967935 -154631848 - L1_Mus2 LINE L1 -299 6267 6195 5 622 2295 76 0 3 chr3 4967935 4968238 -154631545 + L1_Mus2 LINE L1 6264 6565 -1 5 622 327 244 70 16 chr3 4968993 4969213 -154630570 - L1_Mur3 LINE L1 -1737 4406 4138 5 622 473 243 9 0 chr3 4969502 4969613 -154630170 - Lx9 LINE L1 -264 7380 7269 5 622 298 219 105 0 chr3 4969616 4969721 -154630062 + Lx9 LINE L1 7394 7509 -135 5 622 182 368 18 0 chr3 4970237 4970294 -154629489 - MIR SINE MIR -203 59 2 5 622 322 135 19 0 chr3 4970417 4970469 -154629314 - HAL1-3A_ME LINE L1 -831 2027 1975 5 622 544 311 28 11 chr3 4970477 4970656 -154629127 - B3A SINE B2 -16 182 1 5 622 21 82 0 0 chr3 4970928 4970977 -154628806 + AT_rich Low_complexity Low_complexity 1 49 0 5 622 182 350 96 16 chr3 4971612 4971737 -154628046 + MIR3 SINE MIR 4 138 -70 5 622 22 56 0 0 chr3 4971926 4971962 -154627821 + AT_rich Low_complexity Low_complexity 1 36 0 5 622 224 30 0 29 chr3 4972932 4972966 -154626817 + (TAAAAA)n Simple_repeat Simple_repeat 2 34 0 5 622 207 69 0 0 chr3 4973919 4973948 -154625835 + (TG)n Simple_repeat Simple_repeat 1 29 0 5 622 228 111 0 0 chr3 4975445 4975481 -154624302 + (TATG)n Simple_repeat Simple_repeat 1 36 0 5 622 22 0 0 0 chr3 4976065 4976087 -154623696 + AT_rich Low_complexity Low_complexity 1 22 0 5 622 217 51 25 25 chr3 4977073 4977113 -154622670 + (TTTTG)n Simple_repeat Simple_repeat 2 41 0 5 622 1820 53 4 0 chr3 4978005 4978231 -154621552 + L1Md_F2 LINE L1 6323 6549 -33 5 622 230 106 0 21 chr3 4979336 4979384 -154620399 + (CAAAAA)n Simple_repeat Simple_repeat 1 47 0 5 77 5772 176 15 19 chr3 4979481 4981097 -154618686 - Lx LINE L1 -5 6649 5040 5 623 1712 196 0 0 chr3 4981105 4981422 -154618361 + L1_Mm LINE L1 4619 4935 -948 5 623 21 0 0 0 chr3 4981806 4981827 -154617956 + AT_rich Low_complexity Low_complexity 1 21 0 5 623 8397 124 21 29 chr3 4981827 4982294 -154617489 - Lx3A LINE L1 -7 6974 6504 5 623 474 18 0 0 chr3 4982294 4982349 -154617434 + (TTTA)n Simple_repeat Simple_repeat 2 56 0 5 623 8397 118 13 21 chr3 4982349 4983387 -154616396 - Lx3A LINE L1 -478 6503 5482 5 623 1388 104 4 18 chr3 4983384 4983610 -154616173 + Lx3A LINE L1 5122 5344 -542 5 623 4313 126 59 26 chr3 4983888 4984621 -154615162 + Lx LINE L1 5891 6647 -7 5 623 2092 182 88 31 chr3 4984665 4985123 -154614660 + RMER16 LTR ERVK 1 533 0 5 623 214 106 0 41 chr3 4986197 4986246 -154613537 + (TA)n Simple_repeat Simple_repeat 1 47 0 5 623 419 190 40 10 chr3 4986329 4986430 -154613353 - Lx2 LINE L1 -32 6965 6879 5 623 6138 168 12 62 chr3 4986440 4987706 -154612077 + L1_Mur2 LINE L1 4463 5665 -212 5 623 378 42 0 0 chr3 4989102 4989150 -154610633 + (TG)n Simple_repeat Simple_repeat 2 49 0 5 623 911 169 73 6 chr3 4991023 4991201 -154608582 - B2_Mm2 SINE B2 -4 191 2 5 623 276 98 59 0 chr3 4991495 4991546 -154608237 + L1_Mus3 LINE L1 6569 6622 -16 5 623 4184 141 42 51 chr3 4991605 4992502 -154607281 + RMER17D LTR ERVK 1 889 0 5 623 518 262 45 38 chr3 4992665 4992939 -154606844 + L1_Mus3 LINE L1 497 821 -5795 5 623 645 228 183 50 chr3 4992980 4993220 -154606563 - RLTR10A LTR ERVK 0 411 140 5 623 18463 178 15 15 chr3 4993262 4993914 -154605869 + L1_Mus3 LINE L1 799 1386 -4500 5 623 252 77 0 0 chr3 4993914 4993953 -154605830 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 5 623 18463 193 31 98 chr3 4993953 4996029 -154603754 + L1_Mus3 LINE L1 1387 3479 -2407 5 623 234 0 0 0 chr3 4996029 4996055 -154603728 + (CAA)n Simple_repeat Simple_repeat 2 27 0 5 623 18463 166 24 74 chr3 4996055 4997198 -154602585 + L1_Mus3 LINE L1 3480 4643 -1995 5 623 892 245 81 16 chr3 4997198 4997620 -154602163 - RMER17B LTR ERVK 0 958 590 5 623 18463 166 24 74 chr3 4997620 4999572 -154600211 + L1_Mus3 LINE L1 4644 6633 -5 5 623 6995 104 31 13 chr3 5000320 5001652 -154598131 + L1Md_F LINE L1 613 1976 -3907 1 623 299 44 22 0 chr3 5001652 5001697 -154598086 + (CAAA)n Simple_repeat Simple_repeat 2 47 0 2 623 6995 78 25 0 chr3 5001697 5002003 -154597780 + L1Md_F LINE L1 1977 2282 -3601 1 623 449 111 9 69 chr3 5002003 5002103 -154597680 + L1Md_F2 LINE L1 6473 6566 -16 3 623 1175 40 0 7 chr3 5002103 5002253 -154597530 + (GGAA)n Simple_repeat Simple_repeat 2 150 0 4 623 449 111 9 69 chr3 5002253 5002268 -154597515 + L1Md_F2 LINE L1 6567 6581 -1 3 623 24 53 0 0 chr3 5003376 5003414 -154596369 + AT_rich Low_complexity Low_complexity 1 38 0 5 623 364 352 0 9 chr3 5003593 5003699 -154596084 + RSINE1 SINE B4 61 165 0 6 623 225 0 0 0 chr3 5003713 5003738 -154596045 + (CA)n Simple_repeat Simple_repeat 2 26 0 7 623 4171 141 49 99 chr3 5004374 5005316 -154594467 - RMER17A2 LTR ERVK -11 895 1 8 623 204 40 0 0 chr3 5006029 5006054 -154593729 + (TG)n Simple_repeat Simple_repeat 2 26 0 9 623 342 222 0 0 chr3 5006056 5006182 -154593601 + GA-rich Low_complexity Low_complexity 1 126 0 1 623 238 207 34 17 chr3 5006212 5006271 -154593512 - ID4_ SINE ID -19 64 5 1 623 732 97 0 0 chr3 5006329 5006453 -154593330 + (GTTTG)n Simple_repeat Simple_repeat 2 125 0 1 623 186 43 0 0 chr3 5006895 5006918 -154592865 + (CA)n Simple_repeat Simple_repeat 2 24 0 1 623 465 240 0 0 chr3 5006954 5007108 -154592675 + (CA)n Simple_repeat Simple_repeat 1 154 0 1 623 460 127 13 0 chr3 5007446 5007525 -154592258 + L1_Mus2 LINE L1 6487 6566 0 1 623 27595 89 8 24 chr3 5007625 5011960 -154587823 + L1Md_F2 LINE L1 1321 5585 -298 1 623 7353 69 10 9 chr3 5011961 5012953 -154586830 + L1Md_F2 LINE L1 5587 6579 -3 1 623 3031 23 0 0 chr3 5013077 5013423 -154586360 - ORR1A0 LTR MaLR 0 346 1 1 623 14028 52 6 3 chr3 5013423 5015209 -154584574 - ORR1A0-int LTR MaLR 0 1792 1 1 623 704 56 0 0 chr3 5015209 5015298 -154584485 - ORR1A0 LTR MaLR 0 346 258 1 623 21 0 0 0 chr3 5015635 5015656 -154584127 + AT_rich Low_complexity Low_complexity 1 21 0 1 623 3518 87 6 4 chr3 5015706 5016189 -154583594 - L1Md_F2 LINE L1 -19 6563 6080 1 623 252 345 45 11 chr3 5016488 5016576 -154583207 + B4A SINE B4 43 133 -159 1 623 184 279 63 0 chr3 5016695 5016774 -154583009 - MIRc SINE MIR -7 261 178 2 623 235 289 89 0 chr3 5018281 5018371 -154581412 - MIRb SINE MIR -145 123 26 2 623 225 94 0 0 chr3 5018620 5018652 -154581131 + (GGGAGA)n Simple_repeat Simple_repeat 5 36 0 2 623 317 362 41 46 chr3 5018705 5018899 -154580884 + MIR SINE MIR 56 248 -14 2 623 401 355 42 35 chr3 5019076 5019219 -154580564 - RSINE1 SINE B4 -16 149 6 2 623 1620 233 22 16 chr3 5019264 5019513 -154580270 - Lx5 LINE L1 -1 7049 6795 2 623 3126 51 13 0 chr3 5019513 5019904 -154579879 + MTA_Mm LTR MaLR 1 396 0 2 623 1620 233 22 16 chr3 5019904 5020021 -154579762 - Lx5 LINE L1 -256 6794 6681 2 623 288 220 76 8 chr3 5020028 5020147 -154579636 - Lx9 LINE L1 -23 7621 7495 2 623 1858 209 25 25 chr3 5020157 5020516 -154579267 - MTC LTR MaLR 0 421 63 2 623 2725 259 29 10 chr3 5020525 5021220 -154578563 - Lx5 LINE L1 -8 7042 6335 2 623 306 213 16 0 chr3 5021220 5021281 -154578502 - MTC LTR MaLR -349 72 11 2 623 901 219 52 13 chr3 5021291 5021522 -154578261 - Lx9 LINE L1 -230 7414 7175 2 623 229 242 63 16 chr3 5022235 5022298 -154577485 - MTEa LTR MaLR -313 66 1 3 623 1851 127 52 3 chr3 5022654 5022963 -154576820 + Lx3_Mus LINE L1 6678 7001 -8 3 623 381 303 40 53 chr3 5022985 5023135 -154576648 + B3A SINE B2 35 182 -16 3 623 465 311 49 5 chr3 5024427 5024650 -154575133 - L1MA4 LINE L1 -403 5897 5665 3 623 279 0 0 0 chr3 5024797 5024828 -154574955 + (CA)n Simple_repeat Simple_repeat 2 32 0 3 623 369 0 0 0 chr3 5025229 5025270 -154574513 + (TG)n Simple_repeat Simple_repeat 2 42 0 3 623 2945 95 0 14 chr3 5025417 5025844 -154573939 + BGLII LTR ERVK 1 421 0 3 623 422 350 113 5 chr3 5025961 5026165 -154573618 + Tigger7 DNA MER2_type 69 294 -2197 3 623 3107 72 7 0 chr3 5026429 5026833 -154572950 - L1_Mus1 LINE L1 -1 6566 6160 3 623 11592 130 9 5 chr3 5026835 5028891 -154570892 + L1_Mm LINE L1 1794 3858 -2025 3 623 29230 61 47 5 chr3 5028903 5033912 -154565871 + L1Md_T LINE L1 366 5586 -297 4 623 8298 39 0 6 chr3 5033912 5034914 -154564869 + L1Md_T LINE L1 5587 6582 0 4 623 7562 65 5 1 chr3 5034940 5035915 -154563868 + L1Md_F2 LINE L1 5587 6565 -17 4 623 387 102 0 0 chr3 5035922 5035981 -154563802 + L1_Mur2 LINE L1 3851 3909 -1968 4 623 26 0 0 0 chr3 5036780 5036806 -154562977 + AT_rich Low_complexity Low_complexity 1 26 0 4 623 1964 168 138 28 chr3 5037041 5037550 -154562233 + RMER16-int LTR ERVK 255 819 -4587 4 623 565 142 35 9 chr3 5037555 5037669 -154562114 + RMER16-int LTR ERVK 1089 1205 -4201 4 623 1019 223 95 39 chr3 5037687 5037971 -154561812 + ETnERV2-int LTR ERVK 2454 2753 -4653 4 623 7377 134 98 46 chr3 5037998 5038187 -154561596 + ETnERV2-int LTR ERVK 2935 3141 -4265 4 623 180 270 143 0 chr3 5038187 5038250 -154561533 - MER5A DNA MER1_type -109 80 9 4 623 7377 134 98 46 chr3 5038250 5039510 -154560273 + ETnERV2-int LTR ERVK 3142 4525 -2881 4 623 2664 80 29 99 chr3 5039510 5039952 -154559831 - RLTR10A LTR ERVK 0 411 1 4 623 4645 80 21 19 chr3 5039952 5040649 -154559134 - RLTR10-int LTR ERVK -1 1986 1288 4 623 1499 86 5 0 chr3 5040650 5040860 -154558923 - IAP-d-int LTR ERVK -658 5884 5674 4 623 3357 69 86 14 chr3 5040872 5041359 -154558424 - IAP-d-int LTR ERVK -1015 5527 5006 4 623 599 205 33 7 chr3 5041359 5041511 -154558272 - IAP-d-int LTR ERVK -6040 502 347 4 623 1502 126 75 35 chr3 5041505 5041832 -154557951 - IAP-d-int LTR ERVK -1382 605 55 4 623 2811 58 34 41 chr3 5041832 5042246 -154557537 - RLTR10A LTR ERVK 0 411 1 4 623 725 140 0 0 chr3 5042246 5042353 -154557430 + ETnERV2-int LTR ERVK 4520 4626 -2780 4 623 19110 84 5 3 chr3 5042360 5046105 -154553678 - L1Md_F LINE L1 -1797 4086 338 5 623 3679 156 53 12 chr3 5046110 5047036 -154552747 + ETnERV3-int LTR ERVK 4464 6071 -1173 5 623 1122 91 43 1 chr3 5047065 5047261 -154552522 + RLTR13D5 LTR ERVK 291 509 -524 5 623 9459 127 10 7 chr3 5047390 5049018 -154550765 - L1_Mm LINE L1 -413 5470 3838 5 623 486 0 0 0 chr3 5049018 5049072 -154550711 + (T)n Simple_repeat Simple_repeat 1 54 0 5 623 36310 29 0 0 chr3 5049213 5055846 -154543937 - L1Md_T LINE L1 0 6585 1 5 623 2416 176 0 6 chr3 5055845 5056341 -154543442 - L1_Mm LINE L1 -2030 3853 3361 5 623 6692 88 2 1 chr3 5056340 5057318 -154542465 + L1Md_F2 LINE L1 4607 5585 -298 5 623 6992 95 2 8 chr3 5057319 5058311 -154541472 + L1Md_F2 LINE L1 5587 6572 -10 5 623 450 75 0 0 chr3 5058324 5058391 -154541392 + (CATA)n Simple_repeat Simple_repeat 2 68 0 5 623 4072 159 6 5 chr3 5058393 5059196 -154540587 - MusHAL1 LINE L1 -537 2175 1372 5 623 18393 177 27 4 chr3 5059192 5063288 -154536495 + Lx LINE L1 1106 5298 -585 5 623 7242 92 10 0 chr3 5063283 5064337 -154535446 - L1_Mus1 LINE L1 -481 6086 5024 6 623 225 108 0 0 chr3 5064337 5064374 -154535409 + (TTA)n Simple_repeat Simple_repeat 2 38 0 6 623 7242 124 8 0 chr3 5064374 5064668 -154535115 - L1_Mus1 LINE L1 -860 5023 4725 6 623 3037 99 76 5 chr3 5064668 5065113 -154534670 + L1_Mus1 LINE L1 6091 6567 0 6 623 3305 145 25 0 chr3 5065118 5065953 -154533830 + Lx LINE L1 5288 6146 -508 5 623 2290 189 64 14 chr3 5065953 5066468 -154533315 - RMER17D2 LTR ERVK 0 809 269 6 623 1414 87 39 0 chr3 5066469 5066675 -154533108 - L1_Mus1 LINE L1 0 6567 6354 6 623 5415 82 14 0 chr3 5066682 5067556 -154532227 + L1_Mus1 LINE L1 5469 6352 -215 6 623 1892 81 11 49 chr3 5067556 5067843 -154531940 - RMER17D2 LTR ERVK -613 276 1 6 623 2732 158 44 18 chr3 5067843 5068339 -154531444 + Lx LINE L1 6141 6649 -5 6 623 1343 239 93 36 chr3 5069370 5069735 -154530048 - MTD LTR MaLR -14 405 20 6 623 36068 15 1 7 chr3 5069889 5075314 -154524469 + L1Md_A LINE L1 198 5586 -297 6 623 8808 16 0 0 chr3 5075314 5076309 -154523474 + L1Md_A LINE L1 5587 6581 -1 6 623 219 162 26 26 chr3 5076552 5076628 -154523155 + T-rich Low_complexity Low_complexity 3 78 0 6 623 4822 219 36 33 chr3 5076663 5077909 -154521874 - Lx5 LINE L1 -6 7044 5792 6 623 252 315 22 22 chr3 5077994 5078085 -154521698 + L2 LINE L2 1265 1355 -2064 7 623 1279 212 143 14 chr3 5079375 5079738 -154520045 - Lx4B LINE L1 -7 7051 6642 7 623 530 184 10 0 chr3 5079847 5079950 -154519833 + Lx6 LINE L1 6638 6741 -719 7 623 352 143 39 13 chr3 5079953 5080031 -154519752 + (CATATA)n Simple_repeat Simple_repeat 4 83 0 7 623 2668 256 36 3 chr3 5080046 5080709 -154519074 + Lx6 LINE L1 6758 7442 -18 7 623 2831 25 0 12 chr3 5080711 5081042 -154518741 + IAPLTR2b LTR ERVK 1 327 0 7 623 903 113 53 53 chr3 5081043 5081230 -154518553 + IAPEz-int LTR ERVK 9 195 -6286 7 623 276 264 0 0 chr3 5081230 5081283 -154518500 + RLTR27 LTR ERVK 223 275 -34 7 623 239 302 0 0 chr3 5081311 5081364 -154518419 + RLTR27 LTR ERVK 223 275 -34 7 623 3293 70 0 16 chr3 5081364 5082020 -154517763 + IAPEz-int LTR ERVK 168 662 -5819 7 623 2442 74 9 3 chr3 5082020 5082360 -154517423 + IAPEz-int LTR ERVK 1359 1700 -4781 7 623 1315 52 0 0 chr3 5082355 5082527 -154517256 + IAPEz-int LTR ERVK 5653 5824 -657 7 623 322 152 0 0 chr3 5082973 5083032 -154516751 - Lx4B LINE L1 -365 6289 6231 7 623 454 133 0 0 chr3 5083032 5083122 -154516661 + Lx LINE L1 6565 6654 0 7 623 280 350 11 11 chr3 5084076 5084258 -154515525 - Charlie4 DNA MER1_type -19 1942 1761 7 623 306 0 0 0 chr3 5084430 5084464 -154515319 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 7 623 422 265 76 17 chr3 5084464 5084575 -154515208 - B1_Mur2 SINE Alu -11 138 19 8 623 25 31 0 0 chr3 5084609 5084641 -154515142 + AT_rich Low_complexity Low_complexity 1 32 0 8 623 569 348 99 12 chr3 5084837 5085169 -154514614 - MT2A LTR ERVL -108 425 65 8 623 183 129 0 0 chr3 5085301 5085332 -154514451 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 8 623 713 226 192 44 chr3 5085970 5086313 -154513470 - Lx9 LINE L1 -1 7643 7250 8 623 199 415 9 19 chr3 5086712 5086820 -154512963 - MIRb SINE MIR -94 174 68 8 623 267 93 0 0 chr3 5088435 5088478 -154511305 + (CA)n Simple_repeat Simple_repeat 2 44 0 8 623 285 29 0 0 chr3 5090864 5090898 -154508885 + (TG)n Simple_repeat Simple_repeat 1 34 0 8 623 504 0 0 0 chr3 5091066 5091122 -154508661 + (TAGA)n Simple_repeat Simple_repeat 3 58 0 8 623 201 154 0 0 chr3 5091785 5091824 -154507959 + T-rich Low_complexity Low_complexity 1 39 0 8 623 1415 347 54 28 chr3 5093584 5094620 -154505163 - Lx8 LINE L1 -539 7157 6092 9 623 213 357 24 0 chr3 5094957 5095041 -154504742 + BC1_Mm scRNA scRNA 3 88 -64 9 623 1206 266 95 5 chr3 5095656 5096097 -154503686 - Lx9 LINE L1 -16 7628 7148 9 623 27 0 0 0 chr3 5096868 5096895 -154502888 + AT_rich Low_complexity Low_complexity 1 27 0 9 623 432 0 0 0 chr3 5097502 5097550 -154502233 + (TC)n Simple_repeat Simple_repeat 1 48 0 9 623 315 0 0 0 chr3 5097550 5097585 -154502198 + (TG)n Simple_repeat Simple_repeat 1 35 0 9 623 21 0 0 0 chr3 5098669 5098690 -154501093 + AT_rich Low_complexity Low_complexity 1 21 0 9 623 7339 115 58 7 chr3 5099274 5100492 -154499291 - Lx2 LINE L1 -17 6980 5701 9 623 31 82 0 0 chr3 5100541 5100614 -154499169 + AT_rich Low_complexity Low_complexity 1 73 0 9 623 36 23 0 0 chr3 5100672 5100715 -154499068 + AT_rich Low_complexity Low_complexity 1 43 0 9 623 238 343 69 29 chr3 5101574 5101676 -154498107 + MIR SINE MIR 56 161 -101 1 623 256 362 83 49 chr3 5101764 5102039 -154497744 - MLT1B LTR MaLR -13 377 70 1 623 3427 125 29 22 chr3 5102517 5103096 -154496687 + Lx3A LINE L1 6382 6964 -17 1 623 225 0 0 0 chr3 5103097 5103122 -154496661 + (TAAA)n Simple_repeat Simple_repeat 4 28 0 1 623 924 308 45 40 chr3 5103726 5104486 -154495297 + L1_Rod LINE L1 4521 5328 -552 1 623 269 228 0 25 chr3 5104627 5104708 -154495075 + A-rich Low_complexity Low_complexity 2 80 0 1 623 469 347 27 9 chr3 5104779 5105000 -154494783 + Lx8 LINE L1 6856 7080 -393 1 623 340 109 18 0 chr3 5105204 5105259 -154494524 - MTD LTR MaLR -15 404 349 1 623 53 57 0 0 chr3 5105627 5105715 -154494068 + AT_rich Low_complexity Low_complexity 1 88 0 1 623 387 273 46 56 chr3 5106207 5106510 -154493273 - L1MA6 LINE L1 -250 6050 5751 1 623 3237 174 61 5 chr3 5106823 5107434 -154492349 + Lx4A LINE L1 6411 7055 -3 1 623 351 250 28 26 chr3 5107613 5107813 -154491970 - L1MA6 LINE L1 -700 5600 5400 1 623 301 311 215 16 chr3 5108206 5108573 -154491210 + L1MB4 LINE L1 5633 6072 -108 1 623 1827 158 0 0 chr3 5108601 5108937 -154490846 + L1_Mur2 LINE L1 3618 3953 -1924 1 623 8676 110 54 21 chr3 5108939 5110827 -154488956 + L1_Mus3 LINE L1 4432 6386 -252 1 623 467 56 14 0 chr3 5110827 5110898 -154488885 + (CA)n Simple_repeat Simple_repeat 2 73 0 1 623 5646 95 86 52 chr3 5110898 5111137 -154488646 + L1_Mus3 LINE L1 6387 6631 -7 1 624 406 291 14 7 chr3 5111892 5112034 -154487749 - Lx9 LINE L1 -921 6723 6581 1 624 6552 94 18 2 chr3 5112057 5113592 -154486191 - L1Md_F2 LINE L1 -12 6570 5012 1 624 30645 100 13 8 chr3 5113564 5119694 -154480089 - L1Md_F2 LINE L1 -6 6576 410 1 624 207 88 0 0 chr3 5120048 5120082 -154479701 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 1 624 25 51 0 0 chr3 5120149 5120188 -154479595 + AT_rich Low_complexity Low_complexity 1 39 0 1 624 532 278 48 91 chr3 5120204 5120414 -154479369 + B3A SINE B2 9 209 -7 1 624 3362 129 45 40 chr3 5120677 5121283 -154478500 - Lx LINE L1 -1 6653 6045 1 624 237 108 0 0 chr3 5122057 5122094 -154477689 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 1 624 1668 100 62 0 chr3 5122153 5122394 -154477389 + RMER17B LTR ERVK 1 256 -702 1 624 28553 101 56 9 chr3 5122415 5128483 -154471300 - L1Md_F2 LINE L1 -4 6578 209 1 624 2231 195 108 8 chr3 5128491 5129148 -154470635 - MYSERV16_I-int LTR ERVK -307 2019 1297 1 624 423 199 44 108 chr3 5129158 5129316 -154470467 - RMER3D-int LTR ERVK -1163 1679 1532 1 624 1607 188 128 17 chr3 5129348 5129816 -154469967 - RMER3D-int LTR ERVK -1309 1533 1014 1 624 499 75 0 36 chr3 5129850 5129933 -154469850 + (TTTCC)n Simple_repeat Simple_repeat 1 80 0 1 624 454 229 46 28 chr3 5129933 5130256 -154469527 - RMER3D-int LTR ERVK -2038 804 370 1 624 646 208 5 48 chr3 5130337 5130544 -154469239 - RMER3D-int LTR ERVK -1993 849 652 1 624 501 84 7 0 chr3 5130564 5130645 -154469138 - RMER3D-int LTR ERVK -2278 564 489 1 624 2355 91 122 5 chr3 5131051 5131427 -154468356 - BGLII LTR ERVK 0 421 2 1 624 3551 161 109 37 chr3 5132015 5132801 -154466982 + RMER17B LTR ERVK 2 874 -84 1 624 743 134 0 0 chr3 5132805 5132917 -154466866 - RMER17B LTR ERVK 0 958 847 1 624 2511 113 63 10 chr3 5132948 5133358 -154466425 - RMER17B LTR ERVK -526 432 1 1 624 322 281 76 19 chr3 5134196 5134301 -154465482 - PB1D7 SINE Alu -1 119 9 1 624 259 247 26 23 chr3 5134408 5134515 -154465268 + L1MC4 LINE L1 6697 6839 -1203 1 624 633 336 62 31 chr3 5134886 5135239 -154464544 - L2 LINE L2 -506 2913 2550 1 624 994 82 0 0 chr3 5135601 5135735 -154464048 + B1_Mus2 SINE Alu 14 147 0 1 624 306 0 0 0 chr3 5135750 5135784 -154463999 + (GA)n Simple_repeat Simple_repeat 1 34 0 1 624 4091 172 86 25 chr3 5135819 5136762 -154463021 + Lx2B LINE L1 5997 6996 -4 1 624 690 176 5 20 chr3 5137071 5137268 -154462515 + GA-rich Low_complexity Low_complexity 1 194 0 1 624 2089 264 119 29 chr3 5138324 5139216 -154460567 - RCHARR1 DNA MER1_type 0 974 3 1 624 636 106 0 0 chr3 5139579 5139673 -154460110 + (GGGA)n Simple_repeat Simple_repeat 4 97 0 1 624 252 0 0 0 chr3 5139871 5139899 -154459884 + (CACAA)n Simple_repeat Simple_repeat 2 29 0 1 624 21 0 0 0 chr3 5140088 5140109 -154459674 + AT_rich Low_complexity Low_complexity 1 21 0 1 624 312 226 117 11 chr3 5140326 5140420 -154459363 + PB1D7 SINE Alu 17 120 0 1 624 265 271 27 36 chr3 5140426 5140537 -154459246 + GA-rich Low_complexity Low_complexity 5 114 0 1 624 3182 51 29 0 chr3 5142144 5142555 -154457228 - MT2C_Mm LTR ERVL -1 474 52 1 624 3336 213 31 60 chr3 5142561 5143396 -154456387 + RMER1B Other Other 256 1066 0 1 624 612 186 35 26 chr3 5143525 5143641 -154456142 + B1_Mur1 SINE Alu 21 137 -12 1 624 691 215 6 6 chr3 5143658 5143831 -154455952 + (CATATA)n Simple_repeat Simple_repeat 2 174 0 1 624 2340 127 61 3 chr3 5148000 5148378 -154451405 - Lx3_Mus LINE L1 -7 7002 6603 1 624 3148 194 47 18 chr3 5148379 5149003 -154450780 - RLTR26 LTR ERVK 0 642 1 1 624 1792 95 11 0 chr3 5149003 5149267 -154450516 - Lx3_Mus LINE L1 -402 6607 6341 1 624 5679 88 3 24 chr3 5149258 5150402 -154449381 + Lx3_Mus LINE L1 5073 6181 -828 1 624 422 243 9 80 chr3 5150829 5150941 -154448842 + B4A SINE B4 11 114 -178 1 624 662 304 53 0 chr3 5150954 5151125 -154448658 + B4A SINE B4 99 278 -14 1 624 468 105 0 0 chr3 5151135 5151211 -154448572 + (CA)n Simple_repeat Simple_repeat 2 77 0 1 624 4264 80 10 10 chr3 5151392 5151975 -154447808 - L1_Mus1 LINE L1 0 6567 5985 1 624 3633 99 6 0 chr3 5151975 5152522 -154447261 + L1_Mm LINE L1 4124 4673 -1210 1 624 25181 141 32 24 chr3 5152756 5159034 -154440749 + L1_Mus3 LINE L1 261 6634 -4 1 624 720 89 0 0 chr3 5159041 5159142 -154440641 + (GGAA)n Simple_repeat Simple_repeat 4 104 0 1 624 23 33 0 0 chr3 5160144 5160174 -154439609 + AT_rich Low_complexity Low_complexity 1 30 0 1 624 35 0 0 0 chr3 5160547 5160582 -154439201 + AT_rich Low_complexity Low_complexity 1 35 0 1 624 315 0 0 0 chr3 5160686 5160721 -154439062 + (T)n Simple_repeat Simple_repeat 1 35 0 1 624 1525 192 118 11 chr3 5160759 5161130 -154438653 + RLTR20D LTR ERVK 1 460 -108 1 624 270 56 0 0 chr3 5161130 5161166 -154438617 + (TG)n Simple_repeat Simple_repeat 2 37 0 1 624 846 225 132 0 chr3 5161166 5161249 -154438534 + RLTR20D LTR ERVK 461 567 -1 1 624 1135 258 99 9 chr3 5161426 5161800 -154437983 + Lx6 LINE L1 6952 7229 -231 1 624 2273 79 82 0 chr3 5161800 5162128 -154437655 - IAPEY2_LTR LTR ERVK -2 355 1 1 624 1135 262 126 36 chr3 5162128 5162322 -154437461 + Lx6 LINE L1 7230 7434 -26 1 624 34 42 0 0 chr3 5162322 5162370 -154437413 + AT_rich Low_complexity Low_complexity 1 48 0 1 624 238 180 19 39 chr3 5163276 5163328 -154436455 + GA-rich Low_complexity Low_complexity 4 54 0 1 624 2196 126 0 12 chr3 5163353 5163683 -154436100 - ORR1A2 LTR MaLR -1 326 1 1 624 775 313 78 36 chr3 5163898 5164256 -154435527 + MLT1A1 LTR MaLR 19 391 -17 1 624 322 280 53 11 chr3 5165589 5165683 -154434100 + MLT1F2 LTR MaLR 45 142 -418 1 624 540 209 0 34 chr3 5166060 5166179 -154433604 - B1_Mm SINE Alu -7 140 26 1 624 5033 135 25 12 chr3 5166430 5167208 -154432575 - Lx LINE L1 -7 6647 5859 1 624 371 78 16 0 chr3 5167208 5167272 -154432511 + (TG)n Simple_repeat Simple_repeat 1 65 0 1 624 5011 135 25 12 chr3 5167272 5167303 -154432480 - Lx LINE L1 -796 5858 5828 1 624 7691 94 2 19 chr3 5167304 5168500 -154431283 - L1_Mus3 LINE L1 -2 6636 5460 1 624 1009 181 3 1 chr3 5168499 5168686 -154431097 + L1_Mm LINE L1 5010 5229 -917 1 624 22 56 0 0 chr3 5168735 5168771 -154431012 + AT_rich Low_complexity Low_complexity 1 36 0 1 624 203 133 0 0 chr3 5169424 5169454 -154430329 + (TG)n Simple_repeat Simple_repeat 2 31 0 1 624 232 48 23 23 chr3 5169964 5170007 -154429776 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 1 624 1078 75 0 0 chr3 5170007 5170141 -154429642 - B1_Mm SINE Alu -9 138 5 1 624 3362 32 2 2 chr3 5170587 5170993 -154428790 + L1Md_T LINE L1 6174 6579 -3 1 624 234 188 94 0 chr3 5171403 5171467 -154428316 + L1MC1 LINE L1 1643 1712 -4796 1 624 360 0 0 0 chr3 5171668 5171708 -154428075 + (TAGA)n Simple_repeat Simple_repeat 4 43 0 1 624 255 284 52 107 chr3 5171711 5171990 -154427793 + L1MC1 LINE L1 1960 2229 -4279 1 624 2403 113 0 8 chr3 5171990 5172355 -154427428 + L1Md_F2 LINE L1 6220 6581 -1 1 624 1321 289 74 50 chr3 5172355 5173263 -154426520 + L1MC1 LINE L1 2230 3155 -3166 1 624 226 162 14 29 chr3 5173386 5173446 -154426337 + (TTTA)n Simple_repeat Simple_repeat 3 62 0 1 624 806 180 0 21 chr3 5173446 5173588 -154426195 - B1_Mus1 SINE Alu -9 139 1 1 624 226 162 14 29 chr3 5173588 5173597 -154426186 + (TTTA)n Simple_repeat Simple_repeat 2 10 0 1 624 591 262 53 101 chr3 5173608 5173636 -154426147 - B3A SINE B2 0 198 173 1 624 378 42 0 0 chr3 5173636 5173684 -154426099 + (CA)n Simple_repeat Simple_repeat 2 49 0 1 624 591 262 53 101 chr3 5173684 5173863 -154425920 - B3A SINE B2 -26 172 1 1 624 284 204 0 0 chr3 5173866 5173920 -154425863 + L1MC1 LINE L1 4202 4255 -2066 1 624 1304 163 11 55 chr3 5174090 5174302 -154425481 + Lx5 LINE L1 5536 5750 -127 1 624 3948 146 18 73 chr3 5174302 5174621 -154425162 + RMER6A LTR ERVK 1 324 -432 1 624 825 168 42 0 chr3 5174621 5174764 -154425019 + B1_Mur4 SINE Alu 1 149 -1 1 624 3948 146 18 73 chr3 5174764 5175242 -154424541 + RMER6A LTR ERVK 325 754 -2 1 624 1304 163 11 55 chr3 5175242 5175302 -154424481 + Lx5 LINE L1 5751 5796 -81 1 624 3703 228 80 40 chr3 5175329 5175394 -154424389 + Lx5 LINE L1 6041 6111 -939 1 624 876 89 0 0 chr3 5175394 5175517 -154424266 + (GA)n Simple_repeat Simple_repeat 2 124 0 1 624 3703 228 80 40 chr3 5175517 5176420 -154423363 + Lx5 LINE L1 6112 7047 -3 1 624 234 105 0 0 chr3 5176523 5176561 -154423222 + (CA)n Simple_repeat Simple_repeat 1 38 0 1 624 512 269 95 92 chr3 5176790 5177452 -154422331 + L1MC1 LINE L1 4471 5134 -1187 1 624 1167 318 159 18 chr3 5177484 5178021 -154421762 + L1MC1 LINE L1 5239 5875 -644 1 624 1066 122 0 0 chr3 5178021 5178168 -154421615 + B1_Mus1 SINE Alu 1 147 -1 1 624 1167 308 96 18 chr3 5178168 5178748 -154421035 + L1MC1 LINE L1 5876 6502 -6 1 624 714 296 25 7 chr3 5179446 5179650 -154420133 + B3A SINE B2 3 211 -5 1 624 23 0 0 0 chr3 5180681 5180704 -154419079 + AT_rich Low_complexity Low_complexity 1 23 0 1 624 549 30 0 0 chr3 5181430 5181497 -154418286 + (GA)n Simple_repeat Simple_repeat 2 68 0 1 624 2731 87 3 5 chr3 5181705 5182088 -154417695 - MTA_Mm LTR MaLR -2 394 13 1 624 251 20 77 19 chr3 5182092 5182144 -154417639 + (CAAA)n Simple_repeat Simple_repeat 2 56 0 1 624 3500 47 2 2 chr3 5182318 5182747 -154417036 - L1_Mus1 LINE L1 -1 6566 6138 1 624 301 306 16 32 chr3 5182861 5182986 -154416797 + L1VL4 LINE L1 670 792 -5824 1 624 12673 133 8 24 chr3 5182986 5185555 -154414228 + L1VL4 LINE L1 708 3278 -2606 1 624 1415 50 6 0 chr3 5185555 5185737 -154414046 - MTA_Mm LTR MaLR 0 396 214 2 624 3630 67 19 0 chr3 5185739 5186204 -154413579 - MT2C_Mm LTR ERVL 0 475 2 2 624 10468 186 7 82 chr3 5186204 5186498 -154413285 + L1VL4 LINE L1 3281 3566 -2320 1 624 7432 71 18 1 chr3 5186497 5187624 -154412159 + L1_Mus1 LINE L1 5422 6566 -1 2 624 1302 220 81 48 chr3 5188321 5188693 -154411090 + ORR1C2 LTR MaLR 1 384 0 2 624 856 63 0 0 chr3 5188907 5189018 -154410765 + B1_Mus1 SINE Alu 38 148 0 2 624 767 156 7 0 chr3 5189049 5189190 -154410593 + GA-rich Low_complexity Low_complexity 3 144 0 2 624 458 315 41 8 chr3 5189245 5189488 -154410295 - L1M4 LINE L1 -604 5580 5330 2 624 258 89 61 37 chr3 5189999 5190081 -154409702 + (TTTG)n Simple_repeat Simple_repeat 4 87 0 2 624 559 184 8 34 chr3 5190573 5190691 -154409092 - B1_Mur3 SINE Alu -1 148 34 2 624 536 220 7 132 chr3 5191222 5191374 -154408409 + B1_Mur1 SINE Alu 14 147 -3 2 624 207 69 0 0 chr3 5191378 5191407 -154408376 + (TAAA)n Simple_repeat Simple_repeat 3 31 0 2 624 575 301 15 0 chr3 5192274 5192407 -154407376 + ID_B1 SINE B4 81 215 -9 2 624 22 0 0 0 chr3 5192407 5192429 -154407354 + AT_rich Low_complexity Low_complexity 1 22 0 2 624 893 283 77 24 chr3 5192511 5192848 -154406935 + Lx8 LINE L1 6779 7133 -340 2 624 303 285 66 54 chr3 5192889 5193056 -154406727 + Lx8 LINE L1 7305 7473 0 2 624 6375 141 41 14 chr3 5193254 5195036 -154404747 + Lx2 LINE L1 4811 6640 -357 2 624 1307 148 0 5 chr3 5195039 5195257 -154404526 + Lx2 LINE L1 6775 6991 -6 2 624 1314 88 130 0 chr3 5196547 5196763 -154403020 + Lx3A LINE L1 6728 6971 -10 2 624 27 49 0 0 chr3 5196763 5196804 -154402979 + AT_rich Low_complexity Low_complexity 1 41 0 2 624 265 297 72 54 chr3 5197743 5197910 -154401873 + L1MB1 LINE L1 5855 6024 -144 2 624 208 139 0 27 chr3 5198012 5198049 -154401734 + GA-rich Low_complexity Low_complexity 2 37 0 2 624 482 114 13 0 chr3 5198051 5198130 -154401653 + (GGGA)n Simple_repeat Simple_repeat 2 81 0 2 624 1148 289 204 10 chr3 5198317 5198831 -154400952 + Lx6 LINE L1 6818 7431 -29 2 624 3166 91 33 10 chr3 5199004 5199494 -154400289 - Lx LINE L1 -3 6651 6151 2 624 3742 55 2 2 chr3 5200290 5200759 -154399024 + L1_Mus1 LINE L1 6099 6567 0 2 624 34 0 0 0 chr3 5201418 5201452 -154398331 + AT_rich Low_complexity Low_complexity 1 34 0 2 624 21 0 0 0 chr3 5201962 5201983 -154397800 + AT_rich Low_complexity Low_complexity 1 21 0 2 624 195 100 0 0 chr3 5202178 5202208 -154397575 + (TA)n Simple_repeat Simple_repeat 2 31 0 2 624 22 35 0 0 chr3 5202758 5202787 -154396996 + AT_rich Low_complexity Low_complexity 1 29 0 2 624 549 0 0 0 chr3 5204553 5204614 -154395169 + (GA)n Simple_repeat Simple_repeat 2 62 0 2 624 23 97 0 0 chr3 5205632 5205704 -154394079 + AT_rich Low_complexity Low_complexity 1 72 0 2 624 288 91 0 0 chr3 5206032 5206076 -154393707 + (CA)n Simple_repeat Simple_repeat 1 44 0 2 624 207 69 0 0 chr3 5206519 5206548 -154393235 + (TG)n Simple_repeat Simple_repeat 2 30 0 2 624 215 205 0 0 chr3 5207347 5207386 -154392397 + (CA)n Simple_repeat Simple_repeat 2 40 0 2 624 232 197 139 14 chr3 5212529 5212601 -154387182 - Charlie12 DNA MER1_type -2682 191 111 2 624 311 74 0 36 chr3 5213420 5213476 -154386307 + (TTTTTG)n Simple_repeat Simple_repeat 3 56 0 2 624 228 111 0 0 chr3 5214045 5214081 -154385702 + (TAAA)n Simple_repeat Simple_repeat 4 39 0 2 624 264 30 0 0 chr3 5214285 5214318 -154385465 + (CA)n Simple_repeat Simple_repeat 1 33 0 2 624 216 0 0 0 chr3 5214502 5214526 -154385257 + (CA)n Simple_repeat Simple_repeat 2 25 0 2 624 513 0 0 0 chr3 5214528 5214585 -154385198 + (GA)n Simple_repeat Simple_repeat 1 57 0 2 624 23 0 0 0 chr3 5215215 5215238 -154384545 + AT_rich Low_complexity Low_complexity 1 23 0 2 624 282 29 0 0 chr3 5215861 5215896 -154383887 + (CA)n Simple_repeat Simple_repeat 2 36 0 2 624 761 73 9 0 chr3 5215896 5216004 -154383779 + (GA)n Simple_repeat Simple_repeat 2 111 0 2 624 207 0 0 0 chr3 5216514 5216537 -154383246 + (CCCCCG)n Simple_repeat Simple_repeat 2 24 0 2 624 527 29 14 0 chr3 5217340 5217409 -154382374 + (TA)n Simple_repeat Simple_repeat 2 71 0 2 624 270 73 0 0 chr3 5218146 5218187 -154381596 + (T)n Simple_repeat Simple_repeat 1 41 0 2 624 222 152 21 21 chr3 5218484 5218531 -154381252 + CT-rich Low_complexity Low_complexity 1 47 0 2 624 23 33 0 0 chr3 5218798 5218828 -154380955 + AT_rich Low_complexity Low_complexity 1 30 0 2 624 214 167 0 0 chr3 5219031 5219067 -154380716 + CT-rich Low_complexity Low_complexity 6 41 0 2 624 224 280 13 39 chr3 5219499 5219577 -154380206 + CT-rich Low_complexity Low_complexity 1 76 0 2 624 414 0 0 0 chr3 5219924 5219970 -154379813 + (TG)n Simple_repeat Simple_repeat 2 47 0 2 624 345 24 0 0 chr3 5220008 5220050 -154379733 + (CA)n Simple_repeat Simple_repeat 2 43 0 2 624 720 144 0 27 chr3 5220169 5220298 -154379485 + T-rich Low_complexity Low_complexity 23 148 0 2 624 1061 131 0 6 chr3 5220298 5220475 -154379308 + (TTCCC)n Simple_repeat Simple_repeat 4 179 0 2 624 720 144 0 27 chr3 5220475 5220495 -154379288 + T-rich Low_complexity Low_complexity 4 22 0 2 624 23 54 0 0 chr3 5220545 5220582 -154379201 + AT_rich Low_complexity Low_complexity 1 37 0 2 624 354 23 0 0 chr3 5220864 5220907 -154378876 + (CA)n Simple_repeat Simple_repeat 2 44 0 2 624 217 145 16 16 chr3 5221215 5221278 -154378505 + GA-rich Low_complexity Low_complexity 1 63 0 2 624 580 188 8 8 chr3 5221303 5221437 -154378346 + CT-rich Low_complexity Low_complexity 2 135 0 2 624 390 91 0 0 chr3 5221756 5221811 -154377972 + (TTCC)n Simple_repeat Simple_repeat 3 57 0 2 624 26 0 0 0 chr3 5221999 5222025 -154377758 + AT_rich Low_complexity Low_complexity 1 26 0 2 624 26 30 0 0 chr3 5227041 5227074 -154372709 + AT_rich Low_complexity Low_complexity 1 33 0 2 624 3054 61 2 8 chr3 5228375 5228773 -154371010 - MTA_Mm LTR MaLR 0 396 1 2 624 360 94 0 0 chr3 5228852 5228905 -154370878 + (CA)n Simple_repeat Simple_repeat 1 53 0 2 624 189 0 0 0 chr3 5229279 5229300 -154370483 + (A)n Simple_repeat Simple_repeat 1 21 0 2 624 186 274 97 0 chr3 5231095 5231157 -154368626 - MIRm SINE MIR -96 180 113 2 624 333 0 0 0 chr3 5232466 5232503 -154367280 + (CA)n Simple_repeat Simple_repeat 2 38 0 2 624 26 30 0 0 chr3 5234503 5234536 -154365247 + AT_rich Low_complexity Low_complexity 1 33 0 2 624 307 157 14 14 chr3 5237759 5237830 -154361953 + CT-rich Low_complexity Low_complexity 2 72 0 2 624 23 0 0 0 chr3 5239372 5239395 -154360388 + AT_rich Low_complexity Low_complexity 1 23 0 2 625 228 67 0 0 chr3 5247319 5247349 -154352434 + (TG)n Simple_repeat Simple_repeat 2 31 0 2 625 22 35 0 0 chr3 5247654 5247683 -154352100 + AT_rich Low_complexity Low_complexity 1 29 0 2 625 21 36 0 0 chr3 5248097 5248125 -154351658 + AT_rich Low_complexity Low_complexity 1 28 0 2 625 202 286 0 0 chr3 5252064 5252106 -154347677 - L2c LINE L2 -16 3371 3330 2 625 180 0 0 0 chr3 5252860 5252880 -154346903 + (TC)n Simple_repeat Simple_repeat 2 21 0 2 625 351 0 0 0 chr3 5252880 5252918 -154346865 + (TG)n Simple_repeat Simple_repeat 2 40 0 2 625 939 321 4 33 chr3 5253153 5253424 -154346359 - B4A SINE B4 -22 270 8 2 625 24 32 0 0 chr3 5254670 5254701 -154345082 + AT_rich Low_complexity Low_complexity 1 31 0 2 625 198 91 0 0 chr3 5254811 5254844 -154344939 + (TTTTTA)n Simple_repeat Simple_repeat 2 34 0 2 625 248 111 22 0 chr3 5255602 5255647 -154344136 + (CAT)n Simple_repeat Simple_repeat 3 48 0 2 625 427 259 155 34 chr3 5255854 5256158 -154343625 + MTEb LTR MaLR 1 379 0 2 625 400 336 24 36 chr3 5257488 5257735 -154342048 - L1MB8 LINE L1 -1 6177 5934 2 625 222 205 0 0 chr3 5257906 5257945 -154341838 + ID SINE ID 34 72 -152 2 625 212 213 16 0 chr3 5257948 5258009 -154341774 + (CA)n Simple_repeat Simple_repeat 2 63 0 2 625 505 311 37 6 chr3 5258151 5258296 -154341487 - B3A SINE B2 -30 186 47 2 625 28 0 0 0 chr3 5259673 5259701 -154340082 + AT_rich Low_complexity Low_complexity 1 28 0 2 625 21 36 0 0 chr3 5260816 5260844 -154338939 + AT_rich Low_complexity Low_complexity 1 28 0 2 625 21 0 0 0 chr3 5260890 5260911 -154338872 + AT_rich Low_complexity Low_complexity 1 21 0 2 625 294 341 38 30 chr3 5261363 5261496 -154338287 - B4 SINE B4 -140 152 19 2 625 601 200 106 15 chr3 5262183 5262315 -154337468 + B1_Mur3 SINE Alu 5 148 -1 2 625 203 162 0 0 chr3 5262422 5262459 -154337324 + (CA)n Simple_repeat Simple_repeat 2 38 0 2 625 429 20 0 0 chr3 5262802 5262852 -154336931 + (TG)n Simple_repeat Simple_repeat 2 51 0 2 625 255 133 0 0 chr3 5262982 5263027 -154336756 + (CA)n Simple_repeat Simple_repeat 1 45 0 2 625 228 149 0 0 chr3 5264401 5264448 -154335335 + (TTTA)n Simple_repeat Simple_repeat 3 49 0 2 625 207 0 0 0 chr3 5264955 5264978 -154334805 + (TTAA)n Simple_repeat Simple_repeat 3 25 0 2 625 245 51 0 25 chr3 5265993 5266033 -154333750 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 2 625 1272 91 91 0 chr3 5266244 5266443 -154333340 - L1_Mus2 LINE L1 0 6566 6350 2 625 1738 207 32 16 chr3 5266456 5266834 -154332949 - RMER12 LTR ERVK -938 384 1 2 625 271 206 171 29 chr3 5266858 5266963 -154332820 + MER2 DNA MER2_type 78 197 -148 2 625 1224 48 0 0 chr3 5266983 5267130 -154332653 - B1_Mus1 SINE Alu -1 147 1 2 625 384 22 0 0 chr3 5267642 5267687 -154332096 + (CA)n Simple_repeat Simple_repeat 2 46 0 2 625 234 91 0 0 chr3 5269414 5269447 -154330336 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 2 625 286 195 13 13 chr3 5269904 5269982 -154329801 + (TA)n Simple_repeat Simple_repeat 1 78 0 3 625 189 0 0 0 chr3 5269982 5270003 -154329780 + (TG)n Simple_repeat Simple_repeat 2 22 0 3 625 230 381 109 6 chr3 5270071 5270227 -154329556 - MIRb SINE MIR -67 201 30 3 625 228 105 79 0 chr3 5271023 5271099 -154328684 + (TA)n Simple_repeat Simple_repeat 1 82 0 3 625 27 0 0 0 chr3 5271299 5271326 -154328457 + AT_rich Low_complexity Low_complexity 1 27 0 3 625 340 61 0 0 chr3 5271479 5271528 -154328255 - L1_Mm LINE L1 -1889 3994 3946 3 625 1522 40 0 10 chr3 5273285 5273486 -154326297 - L1Md_F3 LINE L1 -11 6573 6375 3 625 756 0 0 0 chr3 5275861 5275945 -154323838 + (TTTC)n Simple_repeat Simple_repeat 2 85 0 3 625 1223 28 7 0 chr3 5275945 5276089 -154323694 - B1_Mus1 SINE Alu -3 145 1 3 625 839 181 0 20 chr3 5276091 5276238 -154323545 - B1_Mus2 SINE Alu -1 146 3 3 625 243 367 14 21 chr3 5276733 5276875 -154322908 + MIRb SINE MIR 100 240 -28 3 625 3301 74 0 18 chr3 5277696 5278152 -154321631 - L1Md_F2 LINE L1 0 6582 6135 3 625 726 197 7 21 chr3 5279504 5279649 -154320134 + B1_Mm SINE Alu 5 147 0 3 625 22 0 0 0 chr3 5279771 5279793 -154319990 + AT_rich Low_complexity Low_complexity 1 22 0 3 625 339 306 47 28 chr3 5279817 5279948 -154319835 - ID_B1 SINE B4 -133 159 21 3 625 425 161 11 0 chr3 5282054 5282141 -154317642 + (CA)n Simple_repeat Simple_repeat 1 88 0 3 625 212 132 113 0 chr3 5282601 5282654 -154317129 + (TTAA)n Simple_repeat Simple_repeat 4 62 0 3 625 7494 89 1 2 chr3 5284066 5285813 -154313970 + L1_Mus1 LINE L1 4819 6564 -3 3 625 3160 56 5 2 chr3 5286550 5286945 -154312838 - MTA_Mm LTR MaLR 0 396 1 3 625 252 200 0 0 chr3 5287119 5287164 -154312619 + T-rich Low_complexity Low_complexity 1 45 0 3 625 200 211 29 0 chr3 5290741 5290845 -154308938 + (CAGAGA)n Simple_repeat Simple_repeat 2 108 0 3 625 222 143 0 0 chr3 5290900 5290949 -154308834 + (CA)n Simple_repeat Simple_repeat 2 50 0 3 625 687 75 0 0 chr3 5290951 5291045 -154308738 + (GA)n Simple_repeat Simple_repeat 1 94 0 3 625 297 239 82 9 chr3 5291212 5291322 -154308461 - L1MA6 LINE L1 -49 6251 6134 3 625 28650 111 6 10 chr3 5291421 5293684 -154306099 - L1_Mus2 LINE L1 0 6566 4341 3 625 4257 52 52 0 chr3 5293684 5294225 -154305558 - L1Md_F2 LINE L1 -3 6579 6011 3 625 28650 121 9 12 chr3 5294225 5298336 -154301447 - L1_Mus2 LINE L1 -1543 4340 217 3 625 246 95 0 0 chr3 5298431 5298473 -154301310 + (TTA)n Simple_repeat Simple_repeat 1 42 0 3 625 3791 56 0 14 chr3 5299443 5299931 -154299852 - L1Md_F2 LINE L1 0 6582 6102 3 625 714 259 27 152 chr3 5300077 5300300 -154299483 - B3A SINE B2 0 195 1 3 625 650 269 34 93 chr3 5300319 5300524 -154299259 - ID_B1 SINE B4 -29 195 3 3 625 217 294 106 0 chr3 5300934 5301019 -154298764 + L4 LINE RTE 1811 1904 -125 3 625 10578 100 8 5 chr3 5302520 5303867 -154295916 - L1_Mus3 LINE L1 0 6638 5297 3 625 1146 82 0 0 chr3 5303867 5304013 -154295770 - B1_Mm SINE Alu 0 147 2 3 625 10578 118 17 17 chr3 5304013 5304854 -154294929 - L1_Mus3 LINE L1 -587 5296 4445 3 625 2962 57 8 3 chr3 5304854 5305239 -154294544 - L1Md_F2 LINE L1 -1 6581 6195 3 625 10578 118 17 17 chr3 5305239 5305474 -154294309 - L1_Mus3 LINE L1 -1439 4444 4209 3 625 22 0 0 0 chr3 5306119 5306141 -154293642 + AT_rich Low_complexity Low_complexity 1 22 0 3 625 222 277 0 0 chr3 5306408 5306455 -154293328 + (TG)n Simple_repeat Simple_repeat 1 47 0 3 625 692 311 48 70 chr3 5306471 5306744 -154293039 - B4A SINE B4 0 292 26 3 625 573 349 97 30 chr3 5307237 5307669 -154292114 + MER20B DNA MER1_type 3 463 -320 3 625 362 267 7 22 chr3 5307710 5307848 -154291935 + MER20B DNA MER1_type 555 690 -93 3 625 192 77 0 0 chr3 5308880 5308906 -154290877 + (TG)n Simple_repeat Simple_repeat 1 26 0 3 625 549 0 0 0 chr3 5309220 5309281 -154290502 + (TC)n Simple_repeat Simple_repeat 2 62 0 3 625 195 129 0 0 chr3 5310009 5310040 -154289743 + (T)n Simple_repeat Simple_repeat 1 31 0 3 625 6791 98 2 70 chr3 5310104 5311248 -154288535 - MusHAL1 LINE L1 -627 2085 1020 3 625 552 248 34 0 chr3 5311253 5311370 -154288413 - MTEa LTR MaLR -258 121 1 3 625 1081 157 11 9 chr3 5313000 5313182 -154286601 - ORR1B2 LTR MaLR 0 379 195 3 625 204 40 0 0 chr3 5314023 5314048 -154285735 + (TG)n Simple_repeat Simple_repeat 1 25 0 3 625 189 0 0 0 chr3 5314478 5314499 -154285284 + (TG)n Simple_repeat Simple_repeat 2 22 0 3 625 915 161 10 75 chr3 5314831 5315032 -154284751 + ORR1C2 LTR MaLR 1 188 -196 3 625 323 264 71 26 chr3 5315239 5315352 -154284431 + PB1D7 SINE Alu 3 120 0 3 625 421 336 56 39 chr3 5315618 5315903 -154283880 + B4A SINE B4 2 291 -1 3 625 1126 222 0 18 chr3 5316312 5316541 -154283242 - URR1B DNA MER1_type 0 225 1 3 625 9123 162 22 4 chr3 5316610 5318273 -154281510 - L1_Mur2 LINE L1 -517 5360 3669 3 625 612 134 0 8 chr3 5318382 5318502 -154281281 - L1_Mus4 LINE L1 -7 6629 6511 3 625 1423 76 0 11 chr3 5318506 5318692 -154281091 + L1_Mus4 LINE L1 6304 6487 -151 3 625 1427 258 28 16 chr3 5318694 5319124 -154280659 - L1VL4 LINE L1 -5702 600 166 3 625 3634 143 48 25 chr3 5319124 5319796 -154279987 - Lx LINE L1 -15 6639 5953 3 625 294 347 51 11 chr3 5319825 5320003 -154279780 + L2 LINE L2 2430 2614 -805 3 625 217 340 11 55 chr3 5320124 5320256 -154279527 - L2b LINE L2 -52 3323 3225 3 625 244 86 0 0 chr3 5320645 5320680 -154279103 + U2 snRNA snRNA 1 35 -153 3 625 384 22 0 0 chr3 5320861 5320906 -154278877 + (TG)n Simple_repeat Simple_repeat 2 46 0 3 625 251 409 23 41 chr3 5320914 5321085 -154278698 - B3A SINE B2 -26 172 5 3 625 3831 31 2 0 chr3 5321238 5321691 -154278092 + L1Md_T LINE L1 6129 6582 0 3 625 456 19 0 0 chr3 5321701 5321754 -154278029 + (TA)n Simple_repeat Simple_repeat 1 53 0 3 625 352 232 82 19 chr3 5322143 5322271 -154277512 - Lx9 LINE L1 0 7644 7506 3 625 255 61 0 0 chr3 5322271 5322304 -154277479 + (CA)n Simple_repeat Simple_repeat 2 34 0 3 625 352 232 82 19 chr3 5322304 5322333 -154277450 - Lx9 LINE L1 -139 7505 7477 3 625 1623 210 144 2 chr3 5322366 5322763 -154277020 - Lx9 LINE L1 -236 7408 6956 3 625 866 318 43 0 chr3 5325248 5325506 -154274277 + B4 SINE B4 1 269 -23 3 625 195 162 0 0 chr3 5325565 5325602 -154274181 + (CA)n Simple_repeat Simple_repeat 1 37 0 3 625 23 54 0 0 chr3 5325693 5325730 -154274053 + AT_rich Low_complexity Low_complexity 1 37 0 3 625 524 264 116 17 chr3 5325827 5326008 -154273775 + MER2 DNA MER2_type 22 220 -125 3 625 216 0 0 0 chr3 5327944 5327968 -154271815 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 3 625 262 328 0 0 chr3 5332497 5332564 -154267219 - ID2 SINE ID -9 74 8 3 625 266 310 54 40 chr3 5332605 5332679 -154267104 - PB1 SINE Alu -52 75 1 3 625 217 219 62 15 chr3 5337029 5337094 -154262689 - B4 SINE B4 -224 68 1 3 625 26 30 0 0 chr3 5340013 5340046 -154259737 + AT_rich Low_complexity Low_complexity 1 33 0 3 625 996 104 0 0 chr3 5340137 5340272 -154259511 - B1_Mus1 SINE Alu -13 135 1 3 625 183 273 91 0 chr3 5341651 5341717 -154258066 + MIR3 SINE MIR 128 199 -9 3 625 270 0 0 0 chr3 5347061 5347091 -154252692 + (TG)n Simple_repeat Simple_repeat 1 30 0 3 625 638 85 11 0 chr3 5348859 5348953 -154250830 + (TTCC)n Simple_repeat Simple_repeat 2 96 0 3 625 328 130 0 0 chr3 5348956 5349002 -154250781 + (TC)n Simple_repeat Simple_repeat 1 46 0 3 625 282 256 0 0 chr3 5350428 5350506 -154249277 + GA-rich Low_complexity Low_complexity 4 81 0 3 625 21 0 0 0 chr3 5352804 5352825 -154246958 + AT_rich Low_complexity Low_complexity 1 21 0 3 625 1991 127 3 3 chr3 5352973 5353332 -154246451 + L1_Mus4 LINE L1 6326 6636 0 3 625 1145 120 34 0 chr3 5353720 5353895 -154245888 + B2_Mm2 SINE B2 1 181 -14 3 625 309 51 0 0 chr3 5353895 5353934 -154245849 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 3 625 228 67 0 0 chr3 5354204 5354234 -154245549 + (TTTA)n Simple_repeat Simple_repeat 1 30 0 3 625 23 0 0 0 chr3 5355501 5355524 -154244259 + AT_rich Low_complexity Low_complexity 1 23 0 3 625 25 31 0 0 chr3 5357394 5357426 -154242357 + AT_rich Low_complexity Low_complexity 1 32 0 3 625 342 0 0 0 chr3 5359862 5359900 -154239883 + (TG)n Simple_repeat Simple_repeat 2 39 0 3 625 231 36 0 0 chr3 5359901 5359929 -154239854 + (GA)n Simple_repeat Simple_repeat 2 29 0 3 625 21 36 0 0 chr3 5360029 5360057 -154239726 + AT_rich Low_complexity Low_complexity 1 28 0 3 625 432 170 28 0 chr3 5360116 5360222 -154239561 + (TA)n Simple_repeat Simple_repeat 1 109 0 3 625 22 0 0 0 chr3 5361224 5361246 -154238537 + AT_rich Low_complexity Low_complexity 1 22 0 3 625 23 0 0 53 chr3 5361388 5361408 -154238375 + AT_rich Low_complexity Low_complexity 1 20 0 3 625 1373 77 6 0 chr3 5361408 5361590 -154238193 - B2_Mm1t SINE B2 -10 183 1 3 625 23 0 0 53 chr3 5361590 5361607 -154238176 + AT_rich Low_complexity Low_complexity 1 16 0 3 625 783 132 13 7 chr3 5362044 5362196 -154237587 + GA-rich Low_complexity Low_complexity 1 153 0 3 625 195 69 0 0 chr3 5362483 5362512 -154237271 + (A)n Simple_repeat Simple_repeat 1 29 0 3 625 521 291 59 27 chr3 5364274 5364461 -154235322 - MLT1A0 LTR MaLR -1 364 172 3 625 31 0 0 0 chr3 5364488 5364519 -154235264 + AT_rich Low_complexity Low_complexity 1 31 0 3 625 441 326 19 64 chr3 5364547 5364704 -154235079 - RSINE1 SINE B4 -3 162 13 3 625 49 52 0 0 chr3 5365035 5365112 -154234671 + AT_rich Low_complexity Low_complexity 1 77 0 3 625 5972 71 6 0 chr3 5365189 5365748 -154234035 + L1_Mus2 LINE L1 5783 6342 -224 3 625 189 0 0 0 chr3 5365748 5365769 -154234014 + (CCA)n Simple_repeat Simple_repeat 1 21 0 4 625 5972 71 6 0 chr3 5365769 5365988 -154233795 + L1_Mus2 LINE L1 6343 6564 -2 3 625 498 61 0 0 chr3 5366107 5366173 -154233610 + (CA)n Simple_repeat Simple_repeat 2 67 0 4 625 2159 237 22 11 chr3 5366673 5367121 -154232662 - Lx5 LINE L1 -3 7047 6595 4 625 211 53 50 50 chr3 5368093 5368153 -154231630 + T-rich Low_complexity Low_complexity 2 61 0 4 625 240 275 32 21 chr3 5368413 5368506 -154231277 + CT-rich Low_complexity Low_complexity 4 97 0 4 625 944 263 78 53 chr3 5369343 5369700 -154230083 - Lx9 LINE L1 -222 7422 7057 4 625 342 0 0 0 chr3 5369919 5369957 -154229826 + (TG)n Simple_repeat Simple_repeat 2 39 0 4 625 26 0 0 0 chr3 5370822 5370848 -154228935 + AT_rich Low_complexity Low_complexity 1 26 0 4 625 191 297 13 26 chr3 5371045 5371121 -154228662 - MIRc SINE MIR -69 199 125 4 625 551 293 15 0 chr3 5371276 5371409 -154228374 + B1_Mur1 SINE Alu 6 140 -9 4 625 922 345 60 27 chr3 5371977 5372493 -154227290 - Lx8 LINE L1 -274 7199 6667 4 625 5013 122 41 22 chr3 5373032 5373910 -154225873 - RMER17A2 LTR ERVK -11 895 1 4 78 518 254 114 11 chr3 5373923 5374098 -154225685 + B3A SINE B2 5 197 -1 4 626 366 341 43 18 chr3 5374454 5374732 -154225051 + L1MB1 LINE L1 5836 6120 -48 4 626 4190 81 8 35 chr3 5375027 5375627 -154224156 - L1_Mus2 LINE L1 0 6566 5983 4 626 240 328 91 37 chr3 5376440 5376627 -154223156 + MIRb SINE MIR 5 201 -67 4 626 225 204 19 0 chr3 5377209 5377263 -154222520 + (TATATG)n Simple_repeat Simple_repeat 3 57 0 4 626 225 247 39 13 chr3 5377348 5377426 -154222357 - Tigger7 DNA MER2_type -2021 470 391 4 626 837 249 15 5 chr3 5377655 5377857 -154221926 + Lx6 LINE L1 7257 7460 0 4 626 21 0 0 0 chr3 5378732 5378753 -154221030 + AT_rich Low_complexity Low_complexity 1 21 0 4 626 198 289 122 28 chr3 5379160 5379267 -154220516 + MIRm SINE MIR 58 174 -102 4 626 225 0 0 0 chr3 5379541 5379566 -154220217 + (TA)n Simple_repeat Simple_repeat 2 26 0 4 626 574 248 0 17 chr3 5380847 5380966 -154218817 - B3 SINE B2 -86 130 14 4 626 204 132 18 70 chr3 5381108 5381165 -154218618 + A-rich Low_complexity Low_complexity 2 55 0 4 626 1764 296 98 37 chr3 5381213 5382036 -154217747 - Lx7 LINE L1 -396 7300 6411 4 626 1351 94 0 30 chr3 5382918 5383115 -154216668 + B2_Mm2 SINE B2 1 191 -4 4 626 1062 290 24 47 chr3 5383272 5383681 -154216102 - Lx9 LINE L1 -234 7410 7011 4 626 39 74 0 0 chr3 5383849 5383930 -154215853 + AT_rich Low_complexity Low_complexity 1 81 0 4 626 878 106 20 0 chr3 5384573 5384724 -154215059 - L1_Mus3 LINE L1 -2 6636 6483 4 626 222 37 0 0 chr3 5384987 5385014 -154214769 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 4 626 31 0 0 0 chr3 5385258 5385289 -154214494 + AT_rich Low_complexity Low_complexity 1 31 0 4 626 581 263 50 65 chr3 5386319 5386579 -154213204 + L1MA5 LINE L1 6044 6299 -1 4 626 523 328 11 17 chr3 5386582 5386735 -154213048 + B3 SINE B2 6 157 -59 4 626 324 0 0 0 chr3 5386735 5386771 -154213012 + (CA)n Simple_repeat Simple_repeat 1 36 0 4 626 523 328 11 17 chr3 5386771 5386794 -154212989 + B3 SINE B2 158 180 -36 4 626 597 94 0 0 chr3 5390008 5390093 -154209690 + (GA)n Simple_repeat Simple_repeat 2 86 0 4 626 227 275 84 84 chr3 5390382 5390501 -154209282 - RLTR9A LTR ERVK -44 324 206 4 626 699 12 0 0 chr3 5390896 5390976 -154208807 + (TC)n Simple_repeat Simple_repeat 2 81 0 4 626 351 0 0 0 chr3 5392185 5392224 -154207559 + (TG)n Simple_repeat Simple_repeat 2 40 0 4 626 398 36 36 0 chr3 5394141 5394196 -154205587 + (GAAA)n Simple_repeat Simple_repeat 4 60 0 4 626 1058 65 0 7 chr3 5394614 5394754 -154205029 - B1_Mus1 SINE Alu -1 147 9 4 626 366 80 0 0 chr3 5397541 5397591 -154202192 + (TA)n Simple_repeat Simple_repeat 2 51 0 4 626 198 0 0 0 chr3 5397591 5397613 -154202170 + (TG)n Simple_repeat Simple_repeat 2 23 0 4 626 557 0 29 0 chr3 5397880 5397948 -154201835 + (TAGA)n Simple_repeat Simple_repeat 4 73 0 4 626 432 306 16 50 chr3 5398051 5398233 -154201550 - Lx8 LINE L1 -145 7328 7153 4 626 203 178 0 62 chr3 5400697 5400745 -154199038 + C-rich Low_complexity Low_complexity 6 50 0 4 626 303 141 0 0 chr3 5400814 5400878 -154198905 + (TCC)n Simple_repeat Simple_repeat 1 64 0 4 626 213 233 22 11 chr3 5404192 5404283 -154195500 + (TA)n Simple_repeat Simple_repeat 1 92 0 4 626 21 0 0 0 chr3 5404435 5404456 -154195327 + AT_rich Low_complexity Low_complexity 1 21 0 4 626 221 179 17 35 chr3 5404469 5404527 -154195256 + T-rich Low_complexity Low_complexity 4 60 0 4 626 312 137 0 0 chr3 5406576 5406627 -154193156 + (CA)n Simple_repeat Simple_repeat 2 52 0 4 626 322 71 57 34 chr3 5406784 5406872 -154192911 + A-rich Low_complexity Low_complexity 1 90 0 4 626 258 328 0 0 chr3 5407028 5407150 -154192633 + L1M4 LINE L1 5529 5650 -534 4 626 254 257 57 0 chr3 5408034 5408104 -154191679 - ZP3AR Satellite Satellite -108 104 31 4 626 237 132 0 0 chr3 5408298 5408336 -154191447 + (TATATG)n Simple_repeat Simple_repeat 2 39 0 4 626 766 224 0 0 chr3 5408350 5408497 -154191286 - B1_Mur4 SINE Alu -1 149 3 4 626 552 299 115 12 chr3 5410050 5410294 -154189489 - MER2 DNA MER2_type -44 301 33 4 626 207 320 0 0 chr3 5412244 5412322 -154187461 + (CAG)n Simple_repeat Simple_repeat 1 78 0 4 626 38 0 0 0 chr3 5413169 5413207 -154186576 + AT_rich Low_complexity Low_complexity 1 38 0 4 626 201 74 0 0 chr3 5415365 5415392 -154184391 + (A)n Simple_repeat Simple_repeat 1 27 0 4 626 279 0 0 0 chr3 5416087 5416118 -154183665 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 4 626 724 203 0 0 chr3 5416127 5416255 -154183528 - B1_Mur3 SINE Alu -21 128 1 4 626 238 93 22 44 chr3 5416225 5416270 -154183513 - MT2B2 LTR ERVL -297 287 244 4 626 315 0 0 0 chr3 5417625 5417660 -154182123 + (GA)n Simple_repeat Simple_repeat 1 35 0 4 626 1231 244 113 42 chr3 5418539 5418919 -154180864 - MTD LTR MaLR 0 419 13 4 626 534 31 0 0 chr3 5419467 5419531 -154180252 + (TA)n Simple_repeat Simple_repeat 2 65 0 4 626 436 281 158 50 chr3 5420918 5421177 -154178606 + B4 SINE B4 2 288 -4 4 626 3388 132 5 31 chr3 5422137 5422709 -154177074 + RLTR31B_Mm LTR ERVK 1 557 0 4 626 210 45 68 0 chr3 5422948 5422992 -154176791 + (TTTTTG)n Simple_repeat Simple_repeat 6 52 0 4 626 258 352 28 19 chr3 5423143 5423250 -154176533 - PB1D10 SINE Alu -7 110 3 4 626 283 312 18 35 chr3 5423251 5423364 -154176419 + LTR41B LTR ERVL 643 753 -5 4 626 700 268 28 6 chr3 5423546 5423726 -154176057 + ID_B1 SINE B4 41 224 0 4 626 255 61 0 0 chr3 5423830 5423863 -154175920 + (TC)n Simple_repeat Simple_repeat 2 34 0 4 626 624 266 116 0 chr3 5423877 5424110 -154175673 + L1MB7 LINE L1 5912 6171 -13 4 626 324 0 0 0 chr3 5424647 5424683 -154175100 + (CA)n Simple_repeat Simple_repeat 2 37 0 4 626 213 267 144 0 chr3 5425329 5425419 -154174364 - MIRc SINE MIR -80 188 86 4 626 498 367 34 4 chr3 5426028 5426321 -154173462 - MLT2C1 LTR ERVL -157 307 1 4 626 333 335 39 24 chr3 5426819 5427027 -154172756 - ERVL-B4-int LTR ERVL -571 5143 4933 4 626 975 292 53 8 chr3 5427195 5427554 -154172229 + Lx8 LINE L1 6287 6661 -812 4 626 1735 185 67 17 chr3 5427656 5428014 -154171769 + ORR1C1 LTR MaLR 3 378 0 4 626 1092 82 0 52 chr3 5428427 5428582 -154171201 + B1_Mus2 SINE Alu 1 147 0 4 626 246 22 87 0 chr3 5428585 5428631 -154171152 + (CAAA)n Simple_repeat Simple_repeat 2 51 0 4 626 1974 118 15 61 chr3 5429518 5429860 -154169923 + ORR1A3 LTR MaLR 1 326 0 4 626 198 304 43 14 chr3 5430041 5430111 -154169672 - MIRc SINE MIR -147 121 50 4 626 231 88 0 0 chr3 5430380 5430414 -154169369 + (T)n Simple_repeat Simple_repeat 1 34 0 4 626 7033 93 7 11 chr3 5431048 5432544 -154167239 - L1_Mus1 LINE L1 0 6567 5071 4 626 700 270 88 18 chr3 5432831 5433174 -154166609 - Lx9 LINE L1 -3 7641 7275 4 626 5735 88 30 0 chr3 5433193 5433995 -154165788 - L1_Mus2 LINE L1 -3 6563 5738 4 626 8330 125 14 2 chr3 5433995 5435422 -154164361 - L1_Mus2 LINE L1 -530 5353 3910 4 626 34809 65 1 25 chr3 5435422 5441463 -154158320 + L1Md_T LINE L1 99 5586 -297 4 626 8038 56 0 0 chr3 5441463 5442459 -154157324 + L1Md_T LINE L1 5587 6582 0 4 626 12553 140 2 2 chr3 5442463 5444676 -154155107 - L1_Mm LINE L1 -1962 3921 1709 4 626 342 282 17 8 chr3 5444706 5444824 -154154959 + L1Md_F LINE L1 573 691 -5828 4 626 286 169 0 17 chr3 5444831 5444891 -154154892 - Lx9 LINE L1 -389 7255 7197 4 626 3270 91 8 10 chr3 5444911 5445268 -154154515 - L1VL4 LINE L1 -2204 1613 1256 4 626 2749 77 0 21 chr3 5445268 5445654 -154154129 - L1Md_F2 LINE L1 -12 6570 6193 4 626 3270 183 31 43 chr3 5445654 5446854 -154152929 - L1VL4 LINE L1 -2562 1255 137 4 626 625 290 31 5 chr3 5446849 5447043 -154152740 - Lx9 LINE L1 -350 7294 7096 4 626 486 162 38 0 chr3 5447754 5447914 -154151869 + (TAGA)n Simple_repeat Simple_repeat 1 166 0 4 626 238 355 135 27 chr3 5449648 5450019 -154149764 - L2 LINE L2 -799 2620 2210 4 626 569 258 19 0 chr3 5450043 5450198 -154149585 - Lx9 LINE L1 -612 7032 6875 4 626 338 319 118 50 chr3 5450559 5450780 -154149003 - L2 LINE L2 -457 2962 2727 4 626 1099 292 119 11 chr3 5451462 5451822 -154147961 + MTD LTR MaLR 7 405 -14 4 626 207 0 0 0 chr3 5452251 5452274 -154147509 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 4 626 316 286 0 0 chr3 5452280 5452357 -154147426 - PB1D7 SINE Alu -17 103 27 4 626 269 364 29 50 chr3 5452328 5452467 -154147316 - ID_B1 SINE B4 -88 136 1 5 626 420 312 9 0 chr3 5452605 5452714 -154147069 - RSINE1 SINE B4 -37 128 19 5 626 360 111 0 0 chr3 5454082 5454136 -154145647 + (TCC)n Simple_repeat Simple_repeat 1 54 0 5 626 180 77 0 0 chr3 5454839 5454865 -154144918 + (TAAA)n Simple_repeat Simple_repeat 1 26 0 5 626 28 48 0 0 chr3 5454869 5454911 -154144872 + AT_rich Low_complexity Low_complexity 1 42 0 5 626 378 0 0 0 chr3 5455783 5455825 -154143958 + (TCTG)n Simple_repeat Simple_repeat 3 44 0 5 626 258 367 23 23 chr3 5456583 5456714 -154143069 - ID_B1 SINE B4 -3 221 91 5 626 278 26 26 0 chr3 5457155 5457194 -154142589 + (CA)n Simple_repeat Simple_repeat 1 40 0 5 626 303 318 91 29 chr3 5457373 5457548 -154142235 - LTR79 LTR ERVL -104 423 238 5 626 1359 179 219 0 chr3 5457740 5458097 -154141686 + MYSERV16_I-int LTR ERVK 1889 2323 -3 5 626 2237 157 57 0 chr3 5458100 5458521 -154141262 + BGLII_A LTR ERVK 1 445 0 5 626 200 217 22 0 chr3 5459916 5459962 -154139821 + GA-rich Low_complexity Low_complexity 2 48 0 5 626 277 194 0 120 chr3 5459981 5460098 -154139685 - Lx9 LINE L1 -3 7641 7539 5 626 2476 112 42 2 chr3 5460098 5460502 -154139281 - BGLII LTR ERVK 0 421 2 5 626 495 0 0 0 chr3 5460549 5460604 -154139179 + (TC)n Simple_repeat Simple_repeat 2 56 0 5 626 2607 85 3 29 chr3 5461440 5461817 -154137966 - L1_Mus2 LINE L1 -2 6564 6198 5 626 3061 105 11 0 chr3 5461817 5462274 -154137509 + L1_Mm LINE L1 3980 4441 -1442 5 626 26227 127 9 2 chr3 5462260 5465613 -154134170 - L1Md_F LINE L1 -428 5455 2074 5 626 189 0 0 0 chr3 5465613 5465634 -154134149 + (TTTA)n Simple_repeat Simple_repeat 4 24 0 5 626 26227 148 27 5 chr3 5465634 5467099 -154132684 - L1Md_F LINE L1 -3810 2073 579 5 626 211 322 88 34 chr3 5467171 5467319 -154132464 - MIRb SINE MIR 0 262 107 5 626 286 269 49 65 chr3 5468096 5468219 -154131564 - MIRc SINE MIR -146 122 2 5 626 7147 239 49 22 chr3 5468684 5469441 -154130342 - Lx6 LINE L1 -4 7456 6686 5 626 2851 83 34 3 chr3 5469441 5469829 -154129954 + MTB LTR MaLR 1 400 0 5 626 10898 205 45 17 chr3 5469829 5472118 -154127665 - Lx6 LINE L1 -775 6685 4333 5 626 180 77 0 0 chr3 5472118 5472144 -154127639 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 5 626 10898 188 43 14 chr3 5472144 5472989 -154126794 - Lx6 LINE L1 -1548 4332 3456 5 626 751 256 18 0 chr3 5472996 5473219 -154126564 + L1_Mur3 LINE L1 3237 3463 -2417 5 626 987 190 29 145 chr3 5473804 5474222 -154125561 - Lx6 LINE L1 -4334 1546 1153 5 626 936 257 30 14 chr3 5474209 5474505 -154125278 - Lx6 LINE L1 -6509 1219 919 5 626 8782 159 53 17 chr3 5474500 5476715 -154123068 + L1_Mus4 LINE L1 4305 6566 0 5 626 839 294 15 15 chr3 5476723 5476992 -154122791 - Lx6 LINE L1 -7373 355 87 5 626 29 0 0 0 chr3 5477048 5477077 -154122706 + AT_rich Low_complexity Low_complexity 1 29 0 5 626 225 0 0 0 chr3 5477193 5477218 -154122565 + (CAAA)n Simple_repeat Simple_repeat 1 25 0 5 626 929 38 15 8 chr3 5477385 5477517 -154122266 - L1Md_F2 LINE L1 -8 6574 6442 5 626 198 0 0 0 chr3 5477820 5477842 -154121941 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 5 626 342 0 0 0 chr3 5478217 5478255 -154121528 + (TAAA)n Simple_repeat Simple_repeat 2 39 0 5 626 6218 46 4 1 chr3 5478460 5479224 -154120559 + L1Md_F2 LINE L1 5817 6582 0 5 626 1255 78 50 0 chr3 5479402 5479581 -154120202 - B2_Mm2 SINE B2 -6 189 2 5 626 2627 211 71 36 chr3 5480027 5480685 -154119098 + Lx2B LINE L1 6316 6996 -4 5 626 33 43 0 0 chr3 5480917 5480964 -154118819 + AT_rich Low_complexity Low_complexity 1 47 0 5 626 468 325 57 8 chr3 5481396 5481520 -154118263 - ID_B1 SINE B4 -77 147 18 5 626 227 150 32 32 chr3 5482228 5482290 -154117493 + (TTTA)n Simple_repeat Simple_repeat 1 62 0 5 626 342 0 0 0 chr3 5482869 5482907 -154116876 + (TG)n Simple_repeat Simple_repeat 2 39 0 5 626 348 297 39 10 chr3 5482908 5483010 -154116773 + PB1 SINE Alu 22 126 -1 5 626 2640 38 22 0 chr3 5483237 5483557 -154116226 - IAPLTR2b LTR ERVK 0 327 1 5 626 220 191 0 0 chr3 5483739 5483786 -154115997 + (TCCA)n Simple_repeat Simple_repeat 3 49 0 5 626 247 375 71 0 chr3 5483787 5483899 -154115884 - MIRm SINE MIR -2 274 155 5 626 275 254 0 0 chr3 5484995 5485054 -154114729 + GA-rich Low_complexity Low_complexity 2 60 0 5 626 180 0 0 0 chr3 5485724 5485744 -154114039 + (CAG)n Simple_repeat Simple_repeat 1 20 0 5 626 530 298 20 7 chr3 5486726 5486878 -154112905 - ID_B1 SINE B4 -7 217 64 5 626 522 0 0 0 chr3 5487125 5487183 -154112600 + (TG)n Simple_repeat Simple_repeat 2 59 0 5 626 7062 106 32 0 chr3 5487310 5488339 -154111444 - Lx2 LINE L1 -310 6687 5626 5 626 501 256 159 14 chr3 5488462 5488676 -154111107 - L1MA5 LINE L1 -283 6017 5773 5 626 616 324 0 27 chr3 5488703 5488887 -154110896 + B3A SINE B2 4 182 -16 5 626 310 288 110 30 chr3 5488923 5489158 -154110625 - L1M5 LINE L1 -272 5890 5630 5 626 439 299 100 41 chr3 5489222 5489442 -154110341 - L1M5 LINE L1 -676 5503 5271 5 626 452 294 104 40 chr3 5489454 5489656 -154110127 - B3 SINE B2 0 216 2 5 626 230 241 99 152 chr3 5489901 5489937 -154109846 - B2_Mm2 SINE B2 -8 187 140 5 626 741 23 0 0 chr3 5489937 5490024 -154109759 + (GA)n Simple_repeat Simple_repeat 2 88 0 5 626 429 239 16 111 chr3 5490024 5490158 -154109625 - B3A SINE B2 -56 139 26 5 626 337 274 117 62 chr3 5490652 5490959 -154108824 - L1M5 LINE L1 -1305 4841 4518 5 626 863 225 34 3 chr3 5491146 5491367 -154108416 - RLTR46 LTR ERVK -43 268 42 5 626 22 0 0 0 chr3 5491394 5491416 -154108367 + AT_rich Low_complexity Low_complexity 1 22 0 5 626 242 205 12 60 chr3 5491573 5491656 -154108127 - L1M5 LINE L1 -1990 4156 4078 5 626 436 281 193 21 chr3 5491729 5491972 -154107811 - L1MC LINE L1 -2178 3968 3684 5 626 28128 110 16 22 chr3 5492060 5495223 -154104560 - L1_Mus1 LINE L1 0 6567 3477 5 626 360 59 0 0 chr3 5495223 5495274 -154104509 + (TTGG)n Simple_repeat Simple_repeat 1 51 0 5 626 28128 169 42 55 chr3 5495274 5498538 -154101245 - L1_Mus1 LINE L1 -2407 3476 224 5 626 284 244 37 37 chr3 5498547 5498628 -154101155 - MTC-int LTR MaLR -873 385 305 5 626 766 133 91 0 chr3 5498598 5498741 -154101042 - ORR1A4 LTR MaLR -88 241 86 5 626 332 287 49 71 chr3 5498842 5499067 -154100716 - L1M5 LINE L1 -2627 3519 3300 5 626 268 426 72 42 chr3 5499390 5499652 -154100131 + LTR16E2 LTR ERVL 213 482 -86 5 626 387 0 0 0 chr3 5499827 5499870 -154099913 + (CA)n Simple_repeat Simple_repeat 2 44 0 5 626 565 378 14 7 chr3 5500000 5500320 -154099463 + L2a LINE L2 2812 3136 -290 1 626 1101 50 21 0 chr3 5500332 5500472 -154099311 - B1_Mm SINE Alu 0 147 5 2 626 6795 133 18 8 chr3 5500565 5502047 -154097736 - Lx LINE L1 -1 6653 5141 3 626 2216 73 15 9 chr3 5502041 5502384 -154097399 - MusHAL1 LINE L1 -2231 481 137 4 626 806 106 35 24 chr3 5502387 5502529 -154097254 + B1_Mus1 SINE Alu 10 148 -1 5 626 186 43 0 0 chr3 5502535 5502558 -154097225 + (CAA)n Simple_repeat Simple_repeat 2 24 0 6 626 372 352 73 12 chr3 5502696 5502860 -154096923 + B3A SINE B2 22 195 -3 7 626 21 36 0 0 chr3 5503355 5503383 -154096400 + AT_rich Low_complexity Low_complexity 1 28 0 8 626 192 179 0 0 chr3 5504279 5504318 -154095465 + CT-rich Low_complexity Low_complexity 4 42 0 9 626 1894 158 16 0 chr3 5504410 5504726 -154095057 - ORR1A2 LTR MaLR 0 327 7 1 78 3964 113 29 5 chr3 5504734 5505330 -154094453 - Lx2 LINE L1 0 6997 6388 1 627 1844 128 9 18 chr3 5505330 5505664 -154094119 + L1_Mur3 LINE L1 4121 4451 -1429 1 627 1392 136 12 0 chr3 5505656 5505907 -154093876 - L1_Mur1 LINE L1 -1496 4390 4137 1 627 11337 130 69 17 chr3 5505875 5508632 -154091151 - L1_Mur1 LINE L1 -2744 3142 223 1 627 297 234 0 15 chr3 5508856 5508921 -154090862 - ORR1D1 LTR MaLR -320 64 1 1 627 2973 262 42 12 chr3 5508921 5509639 -154090144 - ORR1D1-int LTR MaLR 0 1370 632 1 627 1160 241 205 32 chr3 5509665 5510133 -154089650 + RLTR20A1 LTR ERVK 3 551 0 1 627 2427 248 60 14 chr3 5510133 5510744 -154089039 - ORR1D1-int LTR MaLR -730 640 2 1 627 973 218 205 11 chr3 5510746 5511024 -154088759 - ORR1D1 LTR MaLR -42 332 1 1 627 396 0 0 0 chr3 5511378 5511422 -154088361 + (TTTTA)n Simple_repeat Simple_repeat 3 46 0 1 627 291 273 0 0 chr3 5511558 5511624 -154088159 + ID4_ SINE ID 5 70 -13 1 627 3396 172 21 16 chr3 5511698 5512305 -154087478 - RLTR17 LTR ERVK -82 610 1 1 627 369 358 98 22 chr3 5512325 5512693 -154087090 + MLT1E2 LTR MaLR 232 627 0 1 627 732 197 131 67 chr3 5514791 5515058 -154084725 - RMER1A Other Other 0 1030 747 2 627 925 159 0 124 chr3 5515195 5515260 -154084523 - ORR1C1 LTR MaLR -88 290 234 2 627 4797 133 93 21 chr3 5515260 5515736 -154084047 - RMER17A2 LTR ERVK 0 906 418 2 627 792 83 0 0 chr3 5515736 5515845 -154083938 + (GAAA)n Simple_repeat Simple_repeat 2 110 0 2 627 4797 133 93 21 chr3 5515845 5516213 -154083570 - RMER17A2 LTR ERVK -489 417 1 2 627 925 159 0 124 chr3 5516213 5516341 -154083442 - ORR1C1 LTR MaLR -145 233 121 2 627 320 335 73 75 chr3 5516647 5517166 -154082617 - MuRRS4-int LTR ERV1 -5128 2478 1961 2 627 505 354 52 21 chr3 5517272 5517751 -154082032 - MuRRS4-int LTR ERV1 -3368 1695 1202 2 627 2006 129 47 41 chr3 5517751 5518116 -154081667 + IAPLTR1_Mm LTR ERVK 1 367 0 2 627 54561 15 7 4 chr3 5518116 5524567 -154075216 + IAPEz-int LTR ERVK 4 6477 -4 2 627 2006 129 47 41 chr3 5524567 5524932 -154074851 + IAPLTR1_Mm LTR ERVK 1 367 0 2 627 300 263 44 9 chr3 5524932 5525092 -154074691 - MMERGLN-int LTR ERV1 -6329 1449 1187 2 627 309 309 36 21 chr3 5525533 5525725 -154074058 - MMERGLN-int LTR ERV1 -6717 839 645 2 627 441 0 0 0 chr3 5527635 5527684 -154072099 + (TTTA)n Simple_repeat Simple_repeat 4 52 0 2 627 364 234 17 34 chr3 5527700 5527863 -154071920 - Lx4B LINE L1 0 7058 6841 2 627 3858 72 0 2 chr3 5528285 5528846 -154070937 + L1Md_F2 LINE L1 5552 6111 -471 2 627 2718 28 0 0 chr3 5528848 5529171 -154070612 - IAPEY2_LTR LTR ERVK -3 354 32 3 627 2406 67 0 26 chr3 5529181 5529521 -154070262 + L1Md_F2 LINE L1 6103 6433 -149 2 627 815 154 0 0 chr3 5529524 5529660 -154070123 - L1Md_F2 LINE L1 -526 6056 5921 3 627 869 115 7 7 chr3 5529664 5529813 -154069970 + L1Md_F2 LINE L1 6434 6582 0 2 627 313 270 29 39 chr3 5530373 5530477 -154069306 + PB1D10 SINE Alu 6 108 -9 3 627 333 0 0 0 chr3 5530530 5530567 -154069216 + (CATA)n Simple_repeat Simple_repeat 2 38 0 3 627 190 296 75 54 chr3 5531681 5531774 -154068009 + L3 LINE CR1 4189 4283 -206 3 627 968 270 5 9 chr3 5531897 5532114 -154067669 + B3 SINE B2 1 216 0 3 627 309 298 91 14 chr3 5533790 5533933 -154065850 + MLT2B4 LTR ERVL 45 198 -358 3 627 405 0 0 0 chr3 5533933 5533978 -154065805 + (TC)n Simple_repeat Simple_repeat 2 46 0 3 627 420 20 0 0 chr3 5533978 5534026 -154065757 + (TG)n Simple_repeat Simple_repeat 2 50 0 3 627 726 315 25 15 chr3 5534981 5535181 -154064602 - ID_B1 SINE B4 -21 203 2 3 627 6624 83 9 26 chr3 5535411 5536497 -154063286 - L1_Mus2 LINE L1 0 6566 5497 4 627 855 152 4 29 chr3 5537220 5537465 -154062318 + CT-rich Low_complexity Low_complexity 1 238 0 4 627 348 24 0 0 chr3 5537722 5537763 -154062020 + (TG)n Simple_repeat Simple_repeat 2 42 0 4 627 435 299 30 56 chr3 5537773 5537971 -154061812 - B3A SINE B2 -4 194 2 4 627 1037 292 92 9 chr3 5538699 5539135 -154060648 - RMER5 LTR ERV1 -2 532 61 4 627 423 0 0 0 chr3 5540044 5540091 -154059692 + (CA)n Simple_repeat Simple_repeat 2 48 0 4 627 1070 102 8 0 chr3 5540444 5540697 -154059086 + (TTTC)n Simple_repeat Simple_repeat 1 254 0 4 627 6481 102 6 6 chr3 5541403 5542494 -154057289 - L1_Mus1 LINE L1 -1 6566 5475 4 627 7781 136 6 22 chr3 5542494 5543916 -154055867 - L1_Mus1 LINE L1 -1132 4751 3352 4 627 6169 135 16 3 chr3 5543912 5545462 -154054321 - L1_Mus1 LINE L1 -3592 2291 725 4 627 310 304 22 0 chr3 5545459 5545597 -154054186 - L1_Mus1 LINE L1 -5801 815 675 4 627 429 300 13 33 chr3 5545619 5545936 -154053847 - L1VL1 LINE L1 -5933 485 91 4 627 21 0 0 0 chr3 5546856 5546877 -154052906 + AT_rich Low_complexity Low_complexity 1 21 0 4 627 385 155 0 0 chr3 5547097 5547155 -154052628 + Lx8 LINE L1 7137 7194 -279 5 627 228 340 64 0 chr3 5548874 5548968 -154050815 + L2 LINE L2 2761 2860 -559 5 627 4522 88 6 3 chr3 5550050 5550696 -154049087 - Lx3_Mus LINE L1 -1 5885 5238 5 627 6488 113 59 23 chr3 5550696 5551767 -154048016 + Lx3_Mus LINE L1 5896 7004 -5 5 627 23 33 0 0 chr3 5551788 5551818 -154047965 + AT_rich Low_complexity Low_complexity 1 30 0 5 627 487 332 45 20 chr3 5552138 5552338 -154047445 + MER2 DNA MER2_type 134 338 -7 5 627 925 94 12 0 chr3 5552549 5552709 -154047074 + (GA)n Simple_repeat Simple_repeat 2 163 0 5 627 341 133 33 0 chr3 5552724 5552784 -154046999 + PB1 SINE Alu 44 105 -22 5 627 5856 81 19 4 chr3 5552918 5553760 -154046023 - MusHAL1 LINE L1 -2 2710 1856 5 627 630 39 0 0 chr3 5553760 5553837 -154045946 + (TC)n Simple_repeat Simple_repeat 2 78 0 5 627 5856 81 19 4 chr3 5553837 5553898 -154045885 - MusHAL1 LINE L1 -857 1855 1795 5 627 353 75 0 19 chr3 5553898 5553952 -154045831 + (TTCC)n Simple_repeat Simple_repeat 1 53 0 5 627 7027 94 19 8 chr3 5553958 5555146 -154044637 - L1_Mus4 LINE L1 -7 6629 5428 6 627 321 242 105 70 chr3 5555146 5555374 -154044409 - RLTR13D3 LTR ERVK 0 1114 673 6 627 253 132 0 0 chr3 5555577 5555615 -154044168 - B2_Mm2 SINE B2 -157 38 1 6 627 1328 125 0 0 chr3 5556114 5556330 -154043453 - L1_Mm LINE L1 -450 5433 5218 6 627 9975 99 64 33 chr3 5556330 5556441 -154043342 - L1VL4 LINE L1 -921 2638 2574 6 627 1098 77 21 0 chr3 5556441 5556584 -154043199 - B1_Mus1 SINE Alu -1 147 2 6 627 9975 113 48 23 chr3 5556584 5559016 -154040767 - L1VL4 LINE L1 -986 2573 27 6 627 456 275 31 75 chr3 5559050 5559211 -154040572 - RSINE1 SINE B4 -8 157 4 6 627 259 326 133 44 chr3 5559324 5559414 -154040369 - RSINE1 SINE B4 -9 156 59 6 627 235 358 7 14 chr3 5561969 5562108 -154037675 + GA-rich Low_complexity Low_complexity 1 138 0 6 627 364 307 97 44 chr3 5562695 5563036 -154036747 + L1MA9 LINE L1 5912 6270 -42 6 627 25 0 0 0 chr3 5563304 5563329 -154036454 + AT_rich Low_complexity Low_complexity 1 25 0 7 627 3743 53 13 0 chr3 5563762 5564233 -154035550 - L1_Mus2 LINE L1 -227 6339 5863 7 627 1709 71 4 4 chr3 5564233 5564460 -154035323 + L1_Mus2 LINE L1 6339 6565 -1 7 627 7067 191 48 9 chr3 5566082 5567824 -154031959 - Lx5 LINE L1 0 7050 5219 7 627 221 368 41 35 chr3 5568952 5569124 -154030659 - L3b LINE CR1 -272 210 38 7 627 419 316 192 0 chr3 5569221 5569307 -154030476 + MIRc SINE MIR 7 102 -166 7 627 378 0 0 0 chr3 5569307 5569349 -154030434 + (TAA)n Simple_repeat Simple_repeat 2 43 0 7 627 419 316 192 0 chr3 5569349 5569455 -154030328 + MIRc SINE MIR 103 235 -33 7 627 261 0 0 0 chr3 5572572 5572601 -154027182 + (T)n Simple_repeat Simple_repeat 1 29 0 7 627 225 254 0 0 chr3 5574015 5574086 -154025697 + A-rich Low_complexity Low_complexity 1 71 0 7 627 229 232 83 24 chr3 5577515 5577599 -154022184 - PB1D10 SINE Alu 0 117 29 7 627 26 0 0 0 chr3 5577654 5577680 -154022103 + AT_rich Low_complexity Low_complexity 1 26 0 7 627 238 373 98 7 chr3 5577680 5577823 -154021960 + RSINE1 SINE B4 2 157 -8 8 627 365 279 138 29 chr3 5578738 5578932 -154020851 - MLT1D LTR MaLR -128 525 335 8 627 354 45 0 0 chr3 5578936 5578980 -154020803 + (TC)n Simple_repeat Simple_repeat 1 44 0 8 627 278 243 29 0 chr3 5578985 5579055 -154020728 + CT-rich Low_complexity Low_complexity 3 74 0 8 627 2092 95 6 65 chr3 5579223 5579562 -154020221 - ORR1A2 LTR MaLR -8 319 1 8 627 234 91 0 0 chr3 5579562 5579595 -154020188 - ORR1A2-int LTR MaLR 0 1963 1931 8 627 5756 157 28 77 chr3 5579581 5580829 -154018954 - ORR1A2-int LTR MaLR -605 1187 1 8 627 2028 116 24 59 chr3 5580829 5581168 -154018615 - ORR1A2 LTR MaLR 0 327 1 8 627 35740 67 2 17 chr3 5581406 5587504 -154012279 - L1Md_F2 LINE L1 -12 6573 563 8 627 477 366 97 97 chr3 5587504 5587855 -154011928 + MLT1F2 LTR MaLR 202 552 -8 8 627 1711 198 57 29 chr3 5588017 5588401 -154011382 - MTB_Mm LTR MaLR 0 407 13 8 627 1120 241 102 52 chr3 5588437 5588710 -154011073 + MTD LTR MaLR 5 294 -125 8 627 2361 77 61 3 chr3 5588710 5589037 -154010746 + ORR1A1 LTR MaLR 1 346 0 8 627 12783 78 19 2 chr3 5589037 5590800 -154008983 + ORR1A1-int LTR MaLR 1 1792 0 8 627 2423 68 61 3 chr3 5590800 5591127 -154008656 + ORR1A1 LTR MaLR 1 346 0 8 627 1120 241 102 52 chr3 5591127 5591232 -154008551 + MTD LTR MaLR 295 402 -17 8 627 274 231 0 0 chr3 5591529 5591581 -154008202 + ID4 SINE ID 1 52 -31 9 627 955 268 40 138 chr3 5591751 5592257 -154007526 + RLTR12B LTR ERVK 47 502 -26 9 627 221 342 102 8 chr3 5592587 5592705 -154007078 - MIR SINE MIR -122 140 12 9 627 991 322 34 11 chr3 5592827 5593185 -154006598 + Lx8 LINE L1 6799 7164 -309 9 627 497 92 0 13 chr3 5593549 5593626 -154006157 + (GGGA)n Simple_repeat Simple_repeat 3 78 0 9 627 390 235 51 36 chr3 5593727 5593864 -154005919 - MER3 DNA MER1_type -50 159 21 9 627 515 362 143 9 chr3 5594583 5594912 -154004871 + MER45B DNA Tip100 143 515 -525 9 627 26 74 0 0 chr3 5596295 5596349 -154003434 + AT_rich Low_complexity Low_complexity 1 54 0 9 627 21 0 0 0 chr3 5596438 5596459 -154003324 + AT_rich Low_complexity Low_complexity 1 21 0 9 627 203 276 0 0 chr3 5597665 5597723 -154002060 + (TA)n Simple_repeat Simple_repeat 2 59 0 9 627 225 0 0 0 chr3 5598571 5598596 -154001187 + (TTTAA)n Simple_repeat Simple_repeat 1 25 0 1 627 261 230 333 11 chr3 5599159 5599266 -154000517 + Lx9 LINE L1 7357 7514 -130 1 627 267 103 0 0 chr3 5599266 5599305 -154000478 + (TA)n Simple_repeat Simple_repeat 2 40 0 1 627 261 230 333 11 chr3 5599305 5599377 -154000406 + Lx9 LINE L1 7515 7594 -50 1 627 2232 209 33 79 chr3 5600158 5600728 -153999055 - RMER20B LTR ERVK -82 545 2 1 627 507 270 16 8 chr3 5601145 5601272 -153998511 + MTD LTR MaLR 5 132 -287 1 627 917 228 82 99 chr3 5601766 5602048 -153997735 + MTD LTR MaLR 129 405 -14 1 627 8502 26 0 1 chr3 5603024 5604222 -153995561 - L1Md_T LINE L1 0 6582 5386 1 627 26 30 0 0 chr3 5604943 5604976 -153994807 + AT_rich Low_complexity Low_complexity 1 33 0 1 627 5130 188 52 15 chr3 5605270 5606471 -153993312 - L1_Mur3 LINE L1 -2560 3317 2072 1 627 1048 247 6 25 chr3 5606526 5606802 -153992981 - L1_Mur3 LINE L1 -6526 1202 930 1 627 3034 75 5 2 chr3 5606802 5607201 -153992582 + MTB LTR MaLR 1 400 0 1 627 1048 247 6 25 chr3 5607201 5607248 -153992535 - L1_Mur3 LINE L1 -6799 929 885 1 627 3020 174 124 3 chr3 5607568 5608236 -153991547 + L1_Mur2 LINE L1 4844 5592 -285 1 627 2002 317 31 17 chr3 5608258 5608843 -153990940 + Lx5 LINE L1 6457 7032 -18 1 627 261 83 0 0 chr3 5608926 5608962 -153990821 + (TAAA)n Simple_repeat Simple_repeat 2 37 0 1 627 2938 80 14 5 chr3 5608964 5609379 -153990404 + BGLII LTR ERVK 3 421 0 1 627 261 83 0 0 chr3 5609441 5609477 -153990306 + (CA)n Simple_repeat Simple_repeat 1 36 0 1 627 225 0 0 0 chr3 5609684 5609709 -153990074 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 1 627 896 319 66 11 chr3 5609727 5610092 -153989691 - MTC LTR MaLR -24 397 13 1 627 251 254 0 0 chr3 5611464 5611523 -153988260 + (CA)n Simple_repeat Simple_repeat 2 60 0 1 627 189 0 0 0 chr3 5612285 5612306 -153987477 + (A)n Simple_repeat Simple_repeat 1 21 0 1 627 18456 126 52 16 chr3 5612476 5614133 -153985650 + Lx3A LINE L1 208 1926 -3960 1 627 504 0 0 0 chr3 5614133 5614189 -153985594 + (TCTA)n Simple_repeat Simple_repeat 3 58 0 1 627 18456 92 18 33 chr3 5614189 5616383 -153983400 + Lx3A LINE L1 1927 4096 -1790 1 627 8025 107 26 6 chr3 5616381 5617803 -153981980 + Lx3A LINE L1 5421 6877 -104 1 627 514 212 52 31 chr3 5617880 5618021 -153981762 - ORR1A1 LTR MaLR -206 178 1 1 627 180 299 89 25 chr3 5618122 5618201 -153981582 - L2 LINE L2 -797 2622 2539 1 627 27 0 0 0 chr3 5619589 5619616 -153980167 + AT_rich Low_complexity Low_complexity 1 27 0 1 627 12129 96 26 0 chr3 5619834 5622315 -153977468 + L1_Mus1 LINE L1 4012 6566 -1 1 627 21 0 0 0 chr3 5622454 5622475 -153977308 + AT_rich Low_complexity Low_complexity 1 21 0 1 627 201 282 83 71 chr3 5622619 5622703 -153977080 + MIRc SINE MIR 2 86 -182 1 627 244 277 30 69 chr3 5622749 5622850 -153976933 - Charlie15a DNA MER1_type -1 223 127 1 627 202 338 0 81 chr3 5623073 5623147 -153976636 - MIRb SINE MIR -174 94 27 1 627 182 269 19 0 chr3 5624964 5625016 -153974767 + L3 LINE CR1 1942 1994 -2495 1 627 751 255 33 14 chr3 5625377 5625588 -153974195 + Lx7 LINE L1 5697 5911 -1785 1 627 8076 32 8 1 chr3 5625774 5626738 -153973045 - L1Md_F3 LINE L1 -2 6582 5612 1 627 3492 290 81 32 chr3 5626738 5626995 -153972788 + Lx7 LINE L1 5902 6189 -1507 1 627 405 0 0 0 chr3 5626995 5627040 -153972743 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 627 3492 290 81 32 chr3 5627040 5628118 -153971665 + Lx7 LINE L1 6190 7302 -394 1 627 1770 257 59 24 chr3 5628117 5628663 -153971120 + Lx9 LINE L1 6802 7366 -278 1 627 385 189 134 41 chr3 5628702 5628873 -153970910 + Lx9 LINE L1 7458 7644 0 1 627 193 290 129 10 chr3 5629458 5629559 -153970224 + L2a LINE L2 3285 3397 -29 1 627 852 282 80 33 chr3 5630529 5630830 -153968953 + ORR1D2 LTR MaLR 5 319 -51 1 627 601 244 39 17 chr3 5630872 5631051 -153968732 + B3A SINE B2 1 183 -15 1 627 21 36 0 0 chr3 5631170 5631198 -153968585 + AT_rich Low_complexity Low_complexity 1 28 0 1 627 349 323 96 54 chr3 5631389 5631742 -153968041 - L1M5 LINE L1 -1827 4319 3952 1 627 414 293 37 0 chr3 5631780 5631971 -153967812 - L1M5 LINE L1 -2319 3827 3627 1 627 2926 76 2 2 chr3 5632409 5632807 -153966976 + MTB_Mm LTR MaLR 10 407 0 1 627 2081 271 41 5 chr3 5632935 5634180 -153965603 - Lx5 LINE L1 -20 7030 5839 1 627 405 0 0 0 chr3 5634180 5634225 -153965558 + (TTA)n Simple_repeat Simple_repeat 2 46 0 1 78 10687 206 46 14 chr3 5634228 5636793 -153962990 - L1_Mur3 LINE L1 -720 5157 2511 1 628 969 133 21 0 chr3 5636794 5636937 -153962846 - B1_Mm SINE Alu 0 147 2 1 628 18676 183 33 22 chr3 5636937 5637394 -153962389 - L1VL4 LINE L1 -618 5265 4737 1 628 555 16 0 0 chr3 5637394 5637458 -153962325 + (TCTA)n Simple_repeat Simple_repeat 3 66 0 1 628 18676 183 33 22 chr3 5637458 5638315 -153961468 - L1VL4 LINE L1 -1147 4736 3860 1 628 387 0 0 0 chr3 5638315 5638358 -153961425 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 628 18676 173 30 20 chr3 5638358 5641215 -153958568 - L1VL4 LINE L1 -2024 3859 1048 1 628 7959 54 1 6 chr3 5641209 5642377 -153957406 - L1Md_F2 LINE L1 -14 6568 5405 1 628 2156 245 157 6 chr3 5642377 5643160 -153956623 - L1VL2 LINE L1 -5577 758 9 1 628 1324 200 56 115 chr3 5643163 5643293 -153956490 - L1_Mur3 LINE L1 -4202 1675 1578 1 628 1172 43 0 0 chr3 5643293 5643433 -153956350 - B1_Mus1 SINE Alu -8 140 1 1 628 1324 202 56 111 chr3 5643433 5643826 -153955957 - L1_Mur3 LINE L1 -4300 1577 1187 1 628 348 24 0 0 chr3 5643826 5643867 -153955916 + (TTTA)n Simple_repeat Simple_repeat 2 42 0 1 628 1141 254 46 43 chr3 5643867 5644355 -153955428 - L1_Mur3 LINE L1 -6510 1218 779 1 628 307 299 170 44 chr3 5644688 5644894 -153954889 - B4A SINE B4 -59 233 2 1 628 195 42 0 0 chr3 5645635 5645659 -153954124 + (TTTG)n Simple_repeat Simple_repeat 4 27 0 1 628 22 94 0 0 chr3 5645966 5646030 -153953753 + AT_rich Low_complexity Low_complexity 1 64 0 1 628 183 156 0 0 chr3 5646054 5646086 -153953697 + T-rich Low_complexity Low_complexity 1 32 0 1 628 1048 109 0 7 chr3 5646129 5646276 -153953507 - B1_Mus2 SINE Alu 0 147 2 1 628 555 216 7 29 chr3 5646901 5647039 -153952744 - RMER1B Other Other -4 1062 928 1 628 1221 262 104 43 chr3 5647223 5647700 -153952083 - RMER1B Other Other -175 891 112 1 628 27 29 0 0 chr3 5647872 5647906 -153951877 + AT_rich Low_complexity Low_complexity 1 34 0 1 628 231 36 0 0 chr3 5647956 5647984 -153951799 + (T)n Simple_repeat Simple_repeat 1 28 0 1 628 37965 29 1 0 chr3 5647987 5654360 -153945423 - L1Md_T LINE L1 -2 6583 111 1 628 216 322 32 63 chr3 5654924 5654987 -153944796 + ID4_ SINE ID 2 62 -21 1 628 1932 163 23 3 chr3 5655586 5655930 -153943853 - Lx2A LINE L1 -9 6999 6649 1 628 2779 222 39 39 chr3 5656073 5656840 -153942943 - L1VL4 LINE L1 -5321 981 215 1 628 237 222 37 0 chr3 5656854 5656908 -153942875 + (TATG)n Simple_repeat Simple_repeat 3 58 0 1 628 600 125 0 16 chr3 5658245 5658367 -153941416 - L1_Mus4 LINE L1 -2 6634 6515 1 628 5308 95 22 0 chr3 5658414 5659179 -153940604 - L1_Mus2 LINE L1 0 6566 5785 1 628 30509 97 6 57 chr3 5659182 5663447 -153936336 - L1Md_F2 LINE L1 -2 6580 2308 1 628 2775 32 0 0 chr3 5663447 5663785 -153935998 - ORR1A0 LTR MaLR -8 338 1 1 628 30509 97 6 57 chr3 5663785 5665697 -153934086 - L1Md_F2 LINE L1 -2 2307 390 1 628 5513 126 6 1 chr3 5665695 5666552 -153933231 - L1_Mm LINE L1 -86 5797 4937 1 628 3755 86 0 0 chr3 5666552 5667052 -153932731 + L1_Mus1 LINE L1 6066 6565 -2 1 628 5398 120 10 26 chr3 5667115 5668003 -153931780 - L1_Mm LINE L1 -945 4938 4065 1 628 4136 110 7 0 chr3 5668004 5668593 -153931190 - L1_Mus4 LINE L1 -107 6529 5937 1 628 325 334 69 32 chr3 5668759 5669034 -153930749 - L1MB8 LINE L1 -71 6107 5816 1 628 6919 36 0 5 chr3 5669034 5669867 -153929916 + L1Md_T LINE L1 5753 6581 -1 1 628 325 334 69 32 chr3 5669867 5669968 -153929815 - L1MB8 LINE L1 -363 5815 5718 1 628 21 36 0 0 chr3 5670871 5670899 -153928884 + AT_rich Low_complexity Low_complexity 1 28 0 1 628 265 302 53 73 chr3 5671136 5671149 -153928634 - B1F SINE Alu -1 148 5 1 628 386 287 8 37 chr3 5671149 5671283 -153928500 - ID_B1 SINE B4 -9 215 86 1 628 4122 47 6 0 chr3 5672413 5672920 -153926863 + L1Md_T LINE L1 6073 6582 0 1 628 22 0 0 0 chr3 5672981 5673003 -153926780 + AT_rich Low_complexity Low_complexity 1 22 0 1 628 3826 172 108 43 chr3 5673288 5674188 -153925595 + RMER17B LTR ERVK 1 958 0 1 628 604 323 61 38 chr3 5674427 5674720 -153925063 + Lx9 LINE L1 6871 7170 -474 1 628 1315 281 50 33 chr3 5674722 5675120 -153924663 - MTD LTR MaLR -14 405 1 1 628 290 257 87 29 chr3 5675262 5675366 -153924417 - LTR40a LTR ERVL -358 161 52 1 628 344 22 22 0 chr3 5675825 5675870 -153923913 + (CA)n Simple_repeat Simple_repeat 1 46 0 1 628 24934 144 8 12 chr3 5677401 5682643 -153917140 + L1_Mus3 LINE L1 365 5580 -303 1 628 5993 72 44 0 chr3 5682642 5683456 -153916327 - L1Md_F2 LINE L1 -2 6580 5731 1 628 4208 72 5 3 chr3 5683456 5684032 -153915751 + L1_Mm LINE L1 3722 4298 -1585 1 628 6201 127 54 7 chr3 5684045 5685048 -153914735 + L1_Mus3 LINE L1 5588 6637 -1 1 628 306 266 132 29 chr3 5685746 5685920 -153913863 - L1MEg LINE L1 -5017 1067 876 1 628 27 29 0 0 chr3 5686591 5686625 -153913158 + AT_rich Low_complexity Low_complexity 1 34 0 1 628 578 284 88 68 chr3 5687523 5687726 -153912057 + RLTR10D LTR ERVK 2 220 -139 1 628 1434 58 5 0 chr3 5687726 5687915 -153911868 + L1Md_A LINE L1 6392 6581 -1 1 628 578 284 88 68 chr3 5687915 5688062 -153911721 + RLTR10D LTR ERVK 221 358 -1 1 628 496 261 9 0 chr3 5688239 5688350 -153911433 - RSINE1 SINE B4 -51 114 3 1 628 22 56 0 0 chr3 5688976 5689012 -153910771 + AT_rich Low_complexity Low_complexity 1 36 0 1 628 955 82 163 0 chr3 5689513 5689660 -153910123 + L1_Mus1 LINE L1 6397 6567 0 1 628 4896 39 2 0 chr3 5690374 5690961 -153908822 + L1Md_T LINE L1 5994 6581 -1 1 628 1009 100 0 14 chr3 5691082 5691216 -153908567 + B1_Mus1 SINE Alu 4 137 -11 1 628 270 0 0 0 chr3 5691216 5691246 -153908537 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 1 628 24053 166 21 10 chr3 5691482 5697777 -153902006 + L1_Mus3 LINE L1 511 6638 0 1 628 671 248 8 0 chr3 5698422 5698555 -153901228 - MER94 DNA AcHobo 0 134 1 1 628 468 0 0 0 chr3 5698926 5698978 -153900805 + (CA)n Simple_repeat Simple_repeat 2 53 0 1 628 335 281 101 8 chr3 5699078 5699207 -153900576 + Lx9 LINE L1 7221 7361 -283 1 628 24 53 0 0 chr3 5699306 5699344 -153900439 + AT_rich Low_complexity Low_complexity 1 38 0 1 628 545 71 92 0 chr3 5699606 5699704 -153900079 - L1Md_F2 LINE L1 -2 6580 6474 1 628 239 297 54 11 chr3 5700415 5700507 -153899276 - MLT1C LTR MaLR -129 338 243 2 628 2586 53 152 3 chr3 5701043 5701386 -153898397 - MTA_Mm LTR MaLR 0 396 3 2 628 236 291 108 19 chr3 5701590 5701708 -153898075 - B1F1 SINE Alu 0 149 28 2 628 23 33 0 0 chr3 5702135 5702165 -153897618 + AT_rich Low_complexity Low_complexity 1 30 0 2 628 26 30 0 0 chr3 5702222 5702255 -153897528 + AT_rich Low_complexity Low_complexity 1 33 0 2 628 10255 171 52 71 chr3 5702256 5705139 -153894644 - Lx3A LINE L1 -9 6972 4021 2 628 8060 25 0 10 chr3 5705139 5706077 -153893706 + RLTR13B3 LTR ERVK 1 929 0 2 628 10255 205 68 120 chr3 5706077 5706436 -153893347 - Lx3A LINE L1 -1866 4020 3706 2 628 8376 34 0 0 chr3 5706436 5707432 -153892351 + L1Md_T LINE L1 5587 6582 0 2 628 10506 151 67 44 chr3 5707432 5710792 -153888991 - Lx3A LINE L1 -1439 4447 209 2 628 839 318 101 16 chr3 5711050 5711418 -153888365 + MER74A LTR ERVL 130 528 -30 2 628 797 339 78 61 chr3 5711873 5712397 -153887386 - MT2A LTR ERVL 0 533 1 2 628 247 306 11 25 chr3 5713349 5713434 -153886349 + ID4 SINE ID 2 82 -1 2 628 336 348 35 14 chr3 5713474 5713617 -153886166 - MIR SINE MIR -116 146 1 2 628 438 279 6 134 chr3 5713653 5713810 -153885973 + ID_B1 SINE B4 84 220 -4 2 628 306 143 0 0 chr3 5713810 5713873 -153885910 + (GGA)n Simple_repeat Simple_repeat 1 63 0 2 628 626 101 20 0 chr3 5713866 5713965 -153885818 + (GAAA)n Simple_repeat Simple_repeat 4 104 0 2 628 34 0 0 0 chr3 5713999 5714033 -153885750 + AT_rich Low_complexity Low_complexity 1 34 0 2 628 420 36 0 0 chr3 5714257 5714313 -153885470 - L1_Mus2 LINE L1 0 6566 6511 2 628 237 218 118 24 chr3 5714323 5714450 -153885333 + Lx6 LINE L1 7321 7459 -1 2 628 345 346 92 0 chr3 5714536 5714666 -153885117 + B4A SINE B4 2 143 -149 2 628 3149 20 38 0 chr3 5715721 5716144 -153883639 - L1Md_T LINE L1 -618 5964 5526 2 628 4977 43 2 0 chr3 5716144 5716743 -153883040 + L1Md_T LINE L1 5983 6582 0 2 628 240 59 0 0 chr3 5716841 5716875 -153882908 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 2 628 2301 117 31 0 chr3 5717403 5717753 -153882030 - Lx3_Mus LINE L1 0 7009 6649 2 628 2172 109 22 0 chr3 5717753 5718066 -153881717 + Lx3_Mus LINE L1 6368 6687 -322 2 628 23 92 0 0 chr3 5718777 5718842 -153880941 + AT_rich Low_complexity Low_complexity 1 65 0 2 628 301 319 50 19 chr3 5719613 5719773 -153880010 - MER2 DNA MER2_type -28 317 153 2 628 371 302 31 16 chr3 5719940 5720068 -153879715 - LTR40b LTR ERVL -4 458 329 2 628 180 0 0 0 chr3 5720251 5720271 -153879512 + (TTTTA)n Simple_repeat Simple_repeat 1 20 0 2 628 1369 148 9 13 chr3 5720626 5720852 -153878931 + URR1B DNA MER1_type 1 225 0 2 628 1577 318 49 19 chr3 5720898 5721817 -153877966 + Lx6 LINE L1 6053 7423 -37 2 628 7218 118 11 10 chr3 5721817 5722851 -153876932 + Lx3A LINE L1 1015 2122 -3764 2 628 4618 96 18 43 chr3 5722851 5723621 -153876162 + RMER17A LTR ERVK 1 751 0 2 628 7218 117 9 10 chr3 5723621 5723898 -153875885 + Lx3A LINE L1 2123 2395 -3491 2 628 3125 164 55 109 chr3 5723898 5724721 -153875062 - RMER17A2 LTR ERVK 0 906 129 2 628 1050 151 11 0 chr3 5724721 5724900 -153874883 + Lx3A LINE L1 4998 5178 -708 2 628 2054 64 5 39 chr3 5724894 5725148 -153874635 - L1VL4 LINE L1 -2486 1073 829 2 628 970 96 67 0 chr3 5725148 5725283 -153874500 - B1_Mm SINE Alu 0 147 4 2 628 2054 60 3 57 chr3 5725283 5725444 -153874339 - L1VL4 LINE L1 -5474 828 674 2 628 2443 73 3 17 chr3 5725446 5725794 -153873989 + ORR1A1-int LTR MaLR 1450 1792 0 2 628 2464 70 52 3 chr3 5725794 5726124 -153873659 + ORR1A1 LTR MaLR 1 346 0 2 628 3740 188 9 0 chr3 5726124 5726761 -153873022 - L1VL4 LINE L1 -5637 665 23 2 628 1844 82 3 67 chr3 5726755 5727069 -153872714 + MusHAL1 LINE L1 228 521 -2191 2 628 6341 63 6 2 chr3 5727064 5727886 -153871897 + L1Md_F2 LINE L1 4762 5586 -297 2 628 7142 91 2 14 chr3 5727887 5728885 -153870898 + L1Md_F2 LINE L1 5588 6573 -9 2 628 4284 187 10 22 chr3 5728876 5729702 -153870081 + Lx LINE L1 5827 6642 -12 2 628 791 141 13 0 chr3 5729717 5729873 -153869910 + GA-rich Low_complexity Low_complexity 3 160 0 2 628 8332 112 20 6 chr3 5730089 5730827 -153868956 + Lx3A LINE L1 5165 5909 -1072 2 628 315 0 0 0 chr3 5730827 5730862 -153868921 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 2 628 8332 132 21 17 chr3 5730862 5731938 -153867845 + Lx3A LINE L1 5910 6981 0 2 628 3049 64 8 2 chr3 5732132 5732526 -153867257 - MTA_Mm LTR MaLR 0 396 1 2 628 379 0 19 19 chr3 5732664 5732716 -153867067 + (CAAAAA)n Simple_repeat Simple_repeat 3 54 0 2 628 777 183 0 0 chr3 5733259 5733412 -153866371 + CT-rich Low_complexity Low_complexity 1 153 0 2 628 1079 83 0 6 chr3 5733412 5733569 -153866214 + (TTTC)n Simple_repeat Simple_repeat 2 157 0 2 628 969 103 0 0 chr3 5733569 5733705 -153866078 - B1_Mus1 SINE Alu -12 136 1 2 628 225 0 0 0 chr3 5733955 5733980 -153865803 + (A)n Simple_repeat Simple_repeat 1 25 0 2 628 213 39 0 0 chr3 5734174 5734200 -153865583 + (TG)n Simple_repeat Simple_repeat 1 26 0 2 628 27 29 0 0 chr3 5734546 5734580 -153865203 + AT_rich Low_complexity Low_complexity 1 34 0 2 628 316 311 92 98 chr3 5735402 5735566 -153864217 + RSINE1 SINE B4 3 165 0 2 628 341 22 0 21 chr3 5735720 5735767 -153864016 + (TAA)n Simple_repeat Simple_repeat 3 48 0 2 628 198 103 0 0 chr3 5735796 5735825 -153863958 + (GA)n Simple_repeat Simple_repeat 1 29 0 2 628 7246 59 8 2 chr3 5737766 5738681 -153861102 + L1Md_F2 LINE L1 5662 6581 -1 2 628 557 330 14 19 chr3 5738952 5739168 -153860615 + Lx8 LINE L1 7047 7261 -212 2 628 2733 194 31 72 chr3 5739176 5739304 -153860479 - RLTR17 LTR ERVK 0 692 591 2 628 3414 92 57 0 chr3 5739304 5739794 -153859989 - L1_Mus3 LINE L1 0 6638 6121 2 628 2733 194 31 72 chr3 5739794 5740286 -153859497 - RLTR17 LTR ERVK -102 590 98 2 628 268 226 21 0 chr3 5740430 5740523 -153859260 + (TA)n Simple_repeat Simple_repeat 1 95 0 2 628 223 244 44 0 chr3 5740739 5740784 -153858999 + ID2 SINE ID 34 80 -3 2 628 24 0 0 0 chr3 5740872 5740896 -153858887 + AT_rich Low_complexity Low_complexity 1 24 0 2 628 17960 122 13 5 chr3 5740971 5744550 -153855233 - L1_Mus2 LINE L1 0 6566 2954 2 628 7605 70 14 5 chr3 5744568 5746266 -153853517 - L1Md_F2 LINE L1 -3 6579 4869 2 628 24844 129 13 83 chr3 5746273 5752571 -153847212 + L1_Mus2 LINE L1 725 6565 -1 2 628 306 400 8 15 chr3 5752926 5753058 -153846725 - B4 SINE B4 -2 290 160 2 628 360 0 0 0 chr3 5754307 5754347 -153845436 + (TA)n Simple_repeat Simple_repeat 1 40 0 2 628 207 0 0 0 chr3 5755971 5755994 -153843789 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 2 628 1944 218 163 19 chr3 5756805 5757339 -153842444 + RMER19C LTR ERVK 1 611 0 2 628 30 27 0 0 chr3 5757610 5757647 -153842136 + AT_rich Low_complexity Low_complexity 1 37 0 2 628 260 27 0 26 chr3 5758313 5758351 -153841432 + (GTTTG)n Simple_repeat Simple_repeat 2 38 0 2 628 332 78 0 0 chr3 5758351 5758395 -153841388 - B1_Mm SINE Alu -8 139 96 2 628 1047 122 0 0 chr3 5759132 5759280 -153840503 - B1_Mus1 SINE Alu 0 148 1 2 628 224 59 29 0 chr3 5759408 5759442 -153840341 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 2 628 1074 84 14 0 chr3 5759442 5759585 -153840198 - B1_Mm SINE Alu -1 146 2 2 628 299 298 164 30 chr3 5760684 5760916 -153838867 + Lx8 LINE L1 7209 7471 -2 2 628 27 49 0 0 chr3 5761188 5761229 -153838554 + AT_rich Low_complexity Low_complexity 1 41 0 2 628 5889 245 50 25 chr3 5762104 5763518 -153836265 + Lx7 LINE L1 6106 7545 -151 2 628 180 0 0 0 chr3 5763518 5763538 -153836245 + (TTA)n Simple_repeat Simple_repeat 1 20 0 2 628 5889 245 50 25 chr3 5763538 5763675 -153836108 + Lx7 LINE L1 7546 7696 0 2 628 185 185 88 53 chr3 5764777 5764834 -153834949 + L2 LINE L2 2495 2553 -866 2 628 250 359 84 0 chr3 5764977 5765108 -153834675 + MLT1C LTR MaLR 34 175 -292 2 78 8157 39 2 1 chr3 5766837 5767972 -153831811 - L1Md_F2 LINE L1 -1 6581 5446 2 629 3716 16 0 0 chr3 5767970 5768407 -153831376 + L1Md_F2 LINE L1 4967 5403 -480 2 629 632 249 5 85 chr3 5768407 5768459 -153831324 + ID_B1 SINE B4 51 224 0 2 629 1020 95 0 0 chr3 5768459 5768596 -153831187 + B1_Mus1 SINE Alu 12 148 0 2 629 184 244 0 0 chr3 5769465 5769506 -153830277 - L2b LINE L2 -1 3374 3334 2 629 11193 159 16 13 chr3 5769779 5772679 -153827104 + Lx LINE L1 3739 6651 -3 2 629 25 31 0 0 chr3 5775038 5775070 -153824713 + AT_rich Low_complexity Low_complexity 1 32 0 2 629 2040 78 0 4 chr3 5775142 5775412 -153824371 - L1_Mus2 LINE L1 -1 6565 6297 2 629 1145 62 0 14 chr3 5775802 5775950 -153823833 + B1_Mm SINE Alu 2 147 0 2 629 329 145 25 17 chr3 5775950 5776069 -153823714 + A-rich Low_complexity Low_complexity 1 120 0 2 629 21 0 0 0 chr3 5776395 5776416 -153823367 + AT_rich Low_complexity Low_complexity 1 21 0 2 629 509 115 0 11 chr3 5776627 5776715 -153823068 + (TA)n Simple_repeat Simple_repeat 1 87 0 2 629 264 59 0 0 chr3 5776743 5776777 -153823006 + (CAAAC)n Simple_repeat Simple_repeat 1 34 0 2 629 400 345 26 40 chr3 5776883 5776926 -153822857 - RSINE1 SINE B4 -4 161 121 2 629 423 0 0 0 chr3 5776926 5776973 -153822810 + (TG)n Simple_repeat Simple_repeat 2 48 0 2 629 400 345 26 40 chr3 5776973 5777080 -153822703 - RSINE1 SINE B4 -45 120 13 2 629 22 35 0 0 chr3 5777595 5777624 -153822159 + AT_rich Low_complexity Low_complexity 1 29 0 2 629 456 19 0 0 chr3 5777723 5777776 -153822007 + (GGAA)n Simple_repeat Simple_repeat 2 54 0 2 629 314 308 39 39 chr3 5778134 5778313 -153821470 - MER2 DNA MER2_type -31 314 136 2 629 570 103 0 0 chr3 5778663 5778750 -153821033 + (GGAA)n Simple_repeat Simple_repeat 4 90 0 2 629 519 60 0 0 chr3 5778742 5778809 -153820974 + (GGGGA)n Simple_repeat Simple_repeat 5 71 0 2 629 374 245 21 11 chr3 5781825 5781920 -153817863 + PB1D10 SINE Alu 3 98 -19 2 629 780 103 0 0 chr3 5782482 5782598 -153817185 + (TG)n Simple_repeat Simple_repeat 2 117 0 2 629 789 281 64 38 chr3 5782603 5782869 -153816914 - B4A SINE B4 -18 274 2 2 629 309 26 0 0 chr3 5783196 5783234 -153816549 + (CAAAA)n Simple_repeat Simple_repeat 3 40 0 2 629 301 63 61 37 chr3 5784047 5784129 -153815654 + A-rich Low_complexity Low_complexity 2 85 0 2 629 189 0 0 0 chr3 5784763 5784784 -153814999 + (TG)n Simple_repeat Simple_repeat 2 22 0 3 629 425 50 0 16 chr3 5784784 5784844 -153814939 + (TA)n Simple_repeat Simple_repeat 1 60 0 3 629 21 0 0 0 chr3 5785236 5785257 -153814526 + AT_rich Low_complexity Low_complexity 1 21 0 3 629 733 315 25 18 chr3 5786731 5787012 -153812771 - Lx7 LINE L1 -864 6609 6327 3 629 941 252 39 78 chr3 5787012 5787395 -153812388 - RMER20B LTR ERVK -25 602 235 3 629 450 274 75 47 chr3 5787639 5787892 -153811891 - Lx7 LINE L1 -1141 6332 6073 3 629 6738 107 48 15 chr3 5787935 5789058 -153810725 - Lx LINE L1 -7 6647 5485 3 629 1526 257 98 19 chr3 5789056 5789731 -153810052 - Lx7 LINE L1 -1680 6016 5261 3 629 342 0 0 0 chr3 5789750 5789788 -153809995 + (TTA)n Simple_repeat Simple_repeat 2 39 0 3 629 1121 162 35 0 chr3 5789800 5789997 -153809786 - Lx3B LINE L1 -6 6967 6764 3 629 357 270 168 19 chr3 5792291 5792499 -153807284 - L1_Mur3 LINE L1 -186 5694 5456 3 629 463 244 32 8 chr3 5792889 5793013 -153806770 - RMER1C Other Other 0 1342 1216 3 629 268 400 44 0 chr3 5793456 5793591 -153806192 - B3A SINE B2 -22 176 36 3 629 25 0 0 0 chr3 5794050 5794075 -153805708 + AT_rich Low_complexity Low_complexity 1 25 0 3 629 899 275 144 9 chr3 5794253 5794572 -153805211 + MTEa LTR MaLR 18 379 0 3 629 234 253 25 25 chr3 5794857 5794938 -153804845 + MLT1A1 LTR MaLR 317 397 -11 3 629 23 0 0 0 chr3 5795518 5795541 -153804242 + AT_rich Low_complexity Low_complexity 1 23 0 3 629 602 235 138 6 chr3 5796846 5797013 -153802770 + RMER15 LTR ERVL 3 191 -384 3 629 977 236 5 5 chr3 5797012 5797212 -153802571 + RMER15 LTR ERVL 354 553 -22 3 629 3736 226 101 59 chr3 5797397 5797690 -153802093 - Lx6 LINE L1 -4 7692 7117 3 629 189 0 0 0 chr3 5797690 5797711 -153802072 + (TA)n Simple_repeat Simple_repeat 1 21 0 3 629 3736 243 86 7 chr3 5797711 5798348 -153801435 - Lx6 LINE L1 -344 7116 6422 3 629 2449 130 14 12 chr3 5798349 5798763 -153801020 - RLTR9F LTR ERVK 0 415 1 3 629 1944 257 59 0 chr3 5798763 5799238 -153800545 - Lx6 LINE L1 -1035 6425 5923 3 629 39368 31 2 6 chr3 5799415 5805615 -153794168 - L1Md_T LINE L1 0 6582 413 3 629 2161 182 40 23 chr3 5805897 5806296 -153793487 - MTC LTR MaLR -4 417 12 3 629 22 56 0 0 chr3 5806345 5806381 -153793402 + AT_rich Low_complexity Low_complexity 1 36 0 3 629 549 30 0 0 chr3 5806459 5806526 -153793257 + (TG)n Simple_repeat Simple_repeat 1 67 0 3 629 282 370 0 44 chr3 5806527 5806640 -153793143 - RSINE1 SINE B4 -16 149 42 3 629 337 326 78 83 chr3 5807752 5807956 -153791827 - MER20 DNA MER1_type -16 203 1 3 629 531 0 0 0 chr3 5808376 5808435 -153791348 + (TC)n Simple_repeat Simple_repeat 1 59 0 3 629 279 0 0 0 chr3 5808547 5808578 -153791205 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 3 629 402 284 97 67 chr3 5808674 5808942 -153790841 + MLT1J-int LTR MaLR 573 848 -539 3 629 6849 99 26 3 chr3 5808985 5809985 -153789798 - RLTR13D5 LTR ERVK 0 1023 1 3 629 324 111 0 0 chr3 5810855 5810909 -153788874 + (TTTTG)n Simple_repeat Simple_repeat 2 55 0 3 629 406 230 90 4 chr3 5811086 5811201 -153788582 - MLT2F LTR ERVL -503 126 5 3 629 732 162 0 30 chr3 5812146 5812311 -153787472 + CT-rich Low_complexity Low_complexity 1 160 0 3 629 1158 112 0 0 chr3 5812318 5812496 -153787287 + (TTTC)n Simple_repeat Simple_repeat 1 178 0 3 629 219 264 14 0 chr3 5812844 5812916 -153786867 + T-rich Low_complexity Low_complexity 4 76 0 3 629 587 176 37 110 chr3 5813228 5813419 -153786364 - MTC-int LTR MaLR -2 1256 1080 3 629 1632 316 76 30 chr3 5813457 5814024 -153785759 - Lx5 LINE L1 0 7050 6458 3 629 22 0 0 0 chr3 5814156 5814178 -153785605 + AT_rich Low_complexity Low_complexity 1 22 0 3 629 299 305 72 39 chr3 5814656 5814837 -153784946 - MLT2B4 LTR ERVL -363 193 7 3 629 2762 164 0 2 chr3 5814980 5815474 -153784309 + L1_Mur2 LINE L1 4149 4641 -1236 3 629 454 305 79 9 chr3 5815471 5815686 -153784097 + L1VL2 LINE L1 95 324 -6011 3 629 28016 138 11 8 chr3 5815655 5819660 -153780123 + L1_Mus2 LINE L1 714 4731 -1152 3 629 207 0 0 0 chr3 5819660 5819683 -153780100 + (CAA)n Simple_repeat Simple_repeat 2 24 0 3 629 28016 133 11 8 chr3 5819683 5820474 -153779309 + L1_Mus2 LINE L1 4732 5534 -349 3 629 4654 60 3 2 chr3 5820474 5821060 -153778723 - LTRIS_Mus LTR ERV1 0 587 1 3 629 28016 102 5 0 chr3 5821060 5822090 -153777693 + L1_Mus2 LINE L1 5535 6564 -2 3 629 300 53 0 0 chr3 5822211 5822249 -153777534 + (TCTA)n Simple_repeat Simple_repeat 4 41 0 3 629 181 357 34 25 chr3 5822320 5822438 -153777345 - L2 LINE L2 -552 2867 2749 3 629 777 206 7 0 chr3 5822613 5822754 -153777029 + B1_Mur4 SINE Alu 2 143 -7 3 629 284 393 20 25 chr3 5822777 5822973 -153776810 - L2 LINE L2 -791 2628 2434 3 629 489 200 22 7 chr3 5823185 5823321 -153776462 + Lx9 LINE L1 7507 7644 0 3 629 227 295 113 9 chr3 5823504 5823610 -153776173 - L2 LINE L2 -1872 1547 1431 3 629 200 118 29 0 chr3 5825227 5825261 -153774522 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 3 629 312 297 13 51 chr3 5825310 5825466 -153774317 - L1MD3 LINE L1 -1997 5998 5849 3 629 22 56 0 0 chr3 5826133 5826169 -153773614 + AT_rich Low_complexity Low_complexity 1 36 0 3 629 23 0 0 0 chr3 5826309 5826332 -153773451 + AT_rich Low_complexity Low_complexity 1 23 0 3 629 4291 103 137 51 chr3 5828072 5828891 -153770892 - RMER17D LTR ERVK 0 889 1 3 629 1702 287 46 36 chr3 5829001 5829604 -153770179 + RodERV21-int LTR ERV1 1121 1729 -3262 3 629 4296 168 48 23 chr3 5829608 5830476 -153769307 - RLTR13D6 LTR ERVK -12 890 1 3 629 3454 276 23 54 chr3 5830476 5831556 -153768227 + RodERV21-int LTR ERV1 1721 2767 -2224 3 629 197 108 26 51 chr3 5831566 5831605 -153768178 - L3 LINE CR1 -3168 1321 1284 3 629 293 365 28 38 chr3 5831686 5832159 -153767624 + RodERV21-int LTR ERV1 3638 4105 -2986 3 629 3223 184 33 20 chr3 5832174 5832808 -153766975 - RLTR26 LTR ERVK 0 642 1 3 629 198 0 0 0 chr3 5833161 5833183 -153766600 + (A)n Simple_repeat Simple_repeat 1 22 0 3 629 180 0 0 0 chr3 5833258 5833278 -153766505 + (A)n Simple_repeat Simple_repeat 1 20 0 3 629 1330 318 46 31 chr3 5833309 5833894 -153765889 + RodERV21-int LTR ERV1 4200 4793 -198 3 629 230 333 21 84 chr3 5833935 5834030 -153765753 + RMER4B LTR ERVK 350 438 -147 3 629 1426 289 34 17 chr3 5834758 5835170 -153764613 - MTD LTR MaLR 0 419 1 3 629 1076 305 75 32 chr3 5835190 5835794 -153763989 - Lx9 LINE L1 -1068 6576 5829 3 629 3501 235 33 20 chr3 5835815 5836659 -153763124 + Lx9 LINE L1 6643 7497 -147 3 629 339 184 35 35 chr3 5836821 5836934 -153762849 + Lx9 LINE L1 7517 7629 -15 3 629 3487 237 121 49 chr3 5837422 5837710 -153762073 - Lx7 LINE L1 0 7696 7359 3 629 257 0 30 0 chr3 5837710 5837743 -153762040 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 3 629 3487 237 121 49 chr3 5837743 5838588 -153761195 - Lx7 LINE L1 -338 7358 6483 3 629 29 0 0 0 chr3 5839827 5839856 -153759927 + AT_rich Low_complexity Low_complexity 1 29 0 3 629 1204 228 145 45 chr3 5840325 5840752 -153759031 - RMER1C Other Other -7 1335 866 3 629 400 279 150 0 chr3 5841021 5841168 -153758615 + MIR SINE MIR 89 257 -5 3 629 1186 49 0 0 chr3 5841262 5841404 -153758379 + B1_Mus2 SINE Alu 1 142 -5 3 629 2888 183 32 21 chr3 5842576 5843743 -153756040 + L1Md_F LINE L1 147 1323 -2494 3 629 27863 106 24 3 chr3 5843755 5846790 -153752993 + L1Md_F2 LINE L1 380 3476 -2407 3 629 243 0 0 0 chr3 5846790 5846817 -153752966 + (CAA)n Simple_repeat Simple_repeat 1 27 0 3 629 27863 98 9 2 chr3 5846817 5848655 -153751128 + L1Md_F2 LINE L1 3477 5330 -553 3 629 468 106 0 0 chr3 5848656 5848722 -153751061 + L1Md_F2 LINE L1 5519 5584 -299 3 629 7042 99 3 2 chr3 5848725 5849719 -153750064 + L1Md_F2 LINE L1 5588 6582 0 3 629 15345 188 12 199 chr3 5849721 5851140 -153748643 + L1_Mus2 LINE L1 1418 2857 -3029 3 629 2474 179 39 191 chr3 5851140 5851694 -153748089 + RMER17A2 LTR ERVK 3 412 -494 3 629 222 37 0 0 chr3 5851694 5851721 -153748062 + (TTTC)n Simple_repeat Simple_repeat 4 30 0 3 629 2474 179 39 191 chr3 5851721 5852232 -153747551 + RMER17A2 LTR ERVK 413 906 0 3 629 18072 134 15 26 chr3 5852232 5855903 -153743880 + L1_Mus2 LINE L1 2852 6564 -2 3 629 358 348 41 48 chr3 5856150 5856295 -153743488 - B4 SINE B4 0 292 149 3 629 723 350 93 28 chr3 5856421 5856888 -153742895 - Lx8 LINE L1 -28 7445 6950 3 629 216 0 0 0 chr3 5856888 5856912 -153742871 + (TA)n Simple_repeat Simple_repeat 1 24 0 3 629 723 345 150 27 chr3 5856912 5857135 -153742648 - Lx8 LINE L1 -524 6949 6667 3 629 389 291 163 6 chr3 5857154 5857320 -153742463 - Lx8 LINE L1 -868 6605 6414 3 629 1757 243 30 88 chr3 5858327 5858928 -153740855 - Lx9 LINE L1 -8 7636 7071 3 629 21 36 0 0 chr3 5859057 5859085 -153740698 + AT_rich Low_complexity Low_complexity 1 28 0 3 629 3837 39 18 20 chr3 5860318 5860822 -153738961 + LSU-rRNA_Hsa rRNA rRNA 3616 4118 -917 3 629 15255 4 0 0 chr3 5860823 5862537 -153737246 + L1Md_A LINE L1 3873 5586 -297 3 629 8991 4 0 0 chr3 5862537 5863533 -153736250 + L1Md_A LINE L1 5587 6582 0 3 629 32 26 0 0 chr3 5863555 5863594 -153736189 + AT_rich Low_complexity Low_complexity 1 39 0 3 629 341 198 70 122 chr3 5863607 5863722 -153736061 + MT2B LTR ERVL 156 264 -337 3 629 760 41 0 10 chr3 5863654 5863746 -153736037 + B1_Mm SINE Alu 45 136 -11 3 629 450 0 0 0 chr3 5863746 5863796 -153735987 + (TAAA)n Simple_repeat Simple_repeat 3 52 0 3 629 280 303 0 0 chr3 5864741 5864817 -153734966 + (TG)n Simple_repeat Simple_repeat 1 76 0 3 629 336 136 29 29 chr3 5864819 5864887 -153734896 - HAL1-3A_ME LINE L1 -831 2027 1960 3 629 22 0 0 0 chr3 5865449 5865471 -153734312 + AT_rich Low_complexity Low_complexity 1 22 0 3 629 1892 274 46 4 chr3 5866409 5866932 -153732851 + Lx9 LINE L1 6370 6914 -730 3 629 1005 253 33 0 chr3 5866933 5867174 -153732609 + Lx9 LINE L1 7173 7421 -223 3 629 212 243 14 0 chr3 5867298 5867372 -153732411 + (TA)n Simple_repeat Simple_repeat 1 75 0 3 629 21 36 0 0 chr3 5867524 5867552 -153732231 + AT_rich Low_complexity Low_complexity 1 28 0 3 629 632 321 19 5 chr3 5867806 5868022 -153731761 - ID_B1 SINE B4 -4 220 2 3 629 22 35 0 0 chr3 5868654 5868683 -153731100 + AT_rich Low_complexity Low_complexity 1 29 0 3 629 215 240 52 26 chr3 5868708 5868785 -153730998 - MIR3 SINE MIR -17 191 113 3 629 5923 113 89 6 chr3 5868988 5869940 -153729843 - L1_Mus3 LINE L1 -3 6635 5605 3 629 556 133 65 19 chr3 5869922 5870029 -153729754 + L1Md_A LINE L1 5647 5758 -824 3 629 450 0 0 0 chr3 5871422 5871472 -153728311 + (TTTA)n Simple_repeat Simple_repeat 3 52 0 3 629 5849 141 42 6 chr3 5871473 5872464 -153727319 - Lx3A LINE L1 -14 6967 5941 3 629 4841 122 7 48 chr3 5872469 5873287 -153726496 + Lx3A LINE L1 5061 5845 -41 3 629 22 0 0 0 chr3 5873363 5873385 -153726398 + AT_rich Low_complexity Low_complexity 1 22 0 3 629 618 345 28 23 chr3 5873617 5873831 -153725952 - B3 SINE B2 0 216 2 4 629 3056 100 0 36 chr3 5874022 5874489 -153725294 + L1_Mus4 LINE L1 6168 6617 -19 4 629 312 27 0 0 chr3 5874489 5874526 -153725257 + (TAA)n Simple_repeat Simple_repeat 3 39 0 4 629 12840 104 22 7 chr3 5875191 5877275 -153722508 - L1VL2 LINE L1 -632 2983 871 4 629 188 35 35 0 chr3 5877275 5877304 -153722479 + (TTG)n Simple_repeat Simple_repeat 2 31 0 4 629 5227 135 63 9 chr3 5877304 5878059 -153721724 - L1VL2 LINE L1 -5465 870 68 4 629 21 0 0 0 chr3 5878130 5878151 -153721632 + AT_rich Low_complexity Low_complexity 1 21 0 4 629 1621 303 121 18 chr3 5878282 5879045 -153720738 - Lx8 LINE L1 -2 7471 6631 4 629 922 323 35 0 chr3 5879060 5879345 -153720438 - Lx8 LINE L1 -900 6573 6279 4 629 206 121 0 0 chr3 5879812 5879845 -153719938 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 4 629 472 258 97 22 chr3 5879852 5880080 -153719703 - Lx8 LINE L1 -1677 5967 5690 4 629 214 276 105 0 chr3 5880148 5880224 -153719559 - PB1D10 SINE Alu -32 85 2 4 629 4068 182 25 9 chr3 5881220 5881913 -153717870 - RLTR45-int LTR ERVK -204 7202 6499 4 629 890 325 15 9 chr3 5881933 5882268 -153717515 - RNERVK23-int LTR ERVK -375 7842 7506 4 629 5130 190 62 91 chr3 5882291 5884120 -153715663 - RLTR45-int LTR ERVK -1337 5907 3583 4 629 318 267 0 55 chr3 5884148 5884239 -153715544 - RMER16-int LTR ERVK -4867 2539 2454 4 629 468 178 93 0 chr3 5884250 5884368 -153715415 - RMER16-int LTR ERVK -5557 1849 1721 4 629 1284 231 125 26 chr3 5884368 5884853 -153714930 - RMER16-int LTR ERVK -4783 623 241 4 629 342 273 24 32 chr3 5885080 5885205 -153714578 - RMER16-int LTR ERVK -6940 304 181 4 629 534 268 46 23 chr3 5885774 5885904 -153713879 - ETnERV2-int LTR ERVK -204 7202 7070 4 629 333 0 0 0 chr3 5886210 5886247 -153713536 + (CA)n Simple_repeat Simple_repeat 1 37 0 4 629 1138 241 158 19 chr3 5886292 5886660 -153713123 - MTD LTR MaLR 0 419 1 4 629 2041 70 11 0 chr3 5887028 5887298 -153712485 + L1Md_F2 LINE L1 6310 6582 0 4 629 2295 216 152 36 chr3 5888286 5888929 -153710854 - Lx2B LINE L1 0 7000 6283 4 629 372 214 12 0 chr3 5888922 5889006 -153710777 - Lx4B LINE L1 -817 6241 6157 4 629 3896 200 48 2 chr3 5889009 5890023 -153709760 + Lx2B LINE L1 5064 6134 -866 4 629 24 67 0 0 chr3 5890694 5890739 -153709044 + AT_rich Low_complexity Low_complexity 1 45 0 4 629 5509 116 54 11 chr3 5890996 5891884 -153707899 + Lx3A LINE L1 6052 6977 -4 4 629 25 31 0 0 chr3 5891908 5891940 -153707843 + AT_rich Low_complexity Low_complexity 1 32 0 4 629 573 303 76 58 chr3 5892115 5892458 -153707325 - MT2A LTR ERVL -184 349 1 4 629 256 323 31 0 chr3 5892458 5892523 -153707260 - B4A SINE B4 -224 68 2 4 629 27 0 0 48 chr3 5892523 5892547 -153707236 + AT_rich Low_complexity Low_complexity 1 24 0 4 629 995 116 0 20 chr3 5892547 5892697 -153707086 + B1_Mus1 SINE Alu 1 147 -1 4 629 27 0 0 48 chr3 5892697 5892714 -153707069 + AT_rich Low_complexity Low_complexity 1 16 0 4 629 1034 256 0 109 chr3 5892738 5893013 -153706770 - RMER6D LTR ERVK 0 720 476 4 629 1541 231 57 95 chr3 5893013 5893506 -153706277 - RMER19C LTR ERVK 0 611 138 4 629 237 242 0 61 chr3 5893556 5893622 -153706161 - RMER6D LTR ERVK -272 448 387 4 629 458 276 105 22 chr3 5894527 5894907 -153704876 + L1M3de LINE L1 1658 2062 -4591 4 629 313 309 224 27 chr3 5894911 5894945 -153704838 + L1M4c LINE L1 1739 1772 -5078 4 629 1263 94 0 0 chr3 5894945 5895125 -153704658 + (GGAGAA)n Simple_repeat Simple_repeat 1 180 0 4 629 313 309 224 27 chr3 5895125 5895273 -153704510 + L1M4c LINE L1 1773 1957 -4893 4 629 244 356 69 5 chr3 5895290 5895493 -153704290 + L1M4c LINE L1 2374 2589 -4260 4 629 3183 65 12 0 chr3 5895618 5896034 -153703749 + BGLII LTR ERVK 1 421 0 4 629 274 281 89 0 chr3 5896216 5896392 -153703391 + L1M4c LINE L1 5025 5224 -1621 4 629 500 288 115 57 chr3 5896551 5897383 -153702400 + L1M4c LINE L1 5467 6356 -658 4 78 37035 53 2 8 chr3 5897398 5903576 -153696207 - L1Md_F2 LINE L1 -2 6580 441 4 630 330 316 83 45 chr3 5903810 5904052 -153695731 - L1MC LINE L1 -1454 4692 4442 4 630 585 215 48 10 chr3 5904496 5904703 -153695080 - L1MC LINE L1 -2919 3227 3013 4 630 790 95 322 10 chr3 5904882 5905084 -153694699 + L1_Mus3 LINE L1 6374 6638 0 4 630 9868 19 0 0 chr3 5905115 5906939 -153692844 - L1Md_T LINE L1 -1 6581 4758 4 630 1070 235 19 28 chr3 5906916 5907235 -153692548 - L1MC LINE L1 -3339 2807 2492 4 630 315 0 0 0 chr3 5907323 5907358 -153692425 + (TC)n Simple_repeat Simple_repeat 1 35 0 4 630 333 0 0 0 chr3 5907358 5907394 -153692389 + (CA)n Simple_repeat Simple_repeat 1 37 0 4 630 27 0 0 0 chr3 5907398 5907425 -153692358 + AT_rich Low_complexity Low_complexity 1 27 0 4 630 431 287 43 0 chr3 5907521 5907636 -153692147 + RSINE1 SINE B4 24 143 -22 4 630 1737 10 0 0 chr3 5908143 5908344 -153691439 + L1Md_A LINE L1 6382 6582 0 4 630 216 186 0 0 chr3 5909246 5909305 -153690478 + CT-rich Low_complexity Low_complexity 2 60 0 4 630 306 0 0 0 chr3 5909313 5909347 -153690436 + (TG)n Simple_repeat Simple_repeat 2 35 0 4 630 1680 229 71 2 chr3 5909384 5909778 -153690005 - MTC LTR MaLR 0 421 1 4 630 902 184 36 41 chr3 5909778 5909999 -153689784 - MTC-int LTR MaLR 0 1258 1039 4 630 3583 213 38 9 chr3 5909999 5910735 -153689048 + Lx2B LINE L1 6224 6980 -20 4 630 1359 262 51 23 chr3 5910767 5910886 -153688897 - RMER1C Other Other -12 1330 1211 4 630 207 0 0 0 chr3 5910886 5910909 -153688874 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 4 630 1359 262 51 23 chr3 5910909 5911218 -153688565 - RMER1C Other Other -132 1210 891 4 630 234 312 26 26 chr3 5911218 5911333 -153688450 - MTC-int LTR MaLR -851 407 293 4 630 370 181 213 0 chr3 5911322 5911416 -153688367 - MTC LTR MaLR -307 114 1 4 630 209 333 0 13 chr3 5912623 5912702 -153687081 - MIR SINE MIR -10 252 175 4 630 224 250 0 14 chr3 5912882 5912951 -153686832 + (TA)n Simple_repeat Simple_repeat 1 68 0 4 630 22 35 0 0 chr3 5914734 5914763 -153685020 + AT_rich Low_complexity Low_complexity 1 29 0 4 630 1507 334 66 34 chr3 5916207 5917591 -153682192 - Lx8 LINE L1 -669 6804 5374 4 630 364 264 0 0 chr3 5917959 5918031 -153681752 - tRNA-Lys-AAG tRNA tRNA -1 75 4 4 630 6237 65 0 0 chr3 5918314 5919103 -153680680 - L1Md_F2 LINE L1 -2 5881 5093 4 630 4535 109 6 11 chr3 5919103 5919798 -153679985 + L1Md_F2 LINE L1 5892 6582 0 4 630 4997 167 26 15 chr3 5919889 5921069 -153678714 - Lx2A1 LINE L1 -990 6018 4823 4 630 2323 174 14 38 chr3 5921071 5921241 -153678542 + L1_Mur2 LINE L1 4356 4522 -1355 4 630 450 0 0 0 chr3 5921241 5921291 -153678492 + (TTTTG)n Simple_repeat Simple_repeat 2 51 0 4 630 1042 96 0 0 chr3 5921291 5921427 -153678356 - B1_Mm SINE Alu -10 137 2 4 630 2323 174 14 38 chr3 5921427 5921756 -153678027 + L1_Mur2 LINE L1 4523 4843 -1034 4 630 3977 161 3 5 chr3 5921928 5922594 -153677189 - L1_Mus3 LINE L1 -141 5742 5078 4 630 5722 111 14 1 chr3 5922597 5923454 -153676329 + L1_Mus3 LINE L1 5771 6638 0 4 630 1038 99 0 0 chr3 5923769 5923931 -153675852 + (GAAA)n Simple_repeat Simple_repeat 2 163 0 4 630 555 178 92 17 chr3 5923936 5924056 -153675727 + B1_Mus1 SINE Alu 1 129 -19 4 630 1035 128 0 0 chr3 5924056 5924220 -153675563 + (TTTC)n Simple_repeat Simple_repeat 4 167 0 4 630 1104 38 0 0 chr3 5924220 5924353 -153675430 - B1_Mus2 SINE Alu -11 136 4 4 630 211 122 66 26 chr3 5924371 5924447 -153675336 + (CAAA)n Simple_repeat Simple_repeat 2 80 0 4 630 404 326 69 28 chr3 5924856 5925001 -153674782 + MTE-int LTR MaLR 752 902 -678 4 630 257 314 74 25 chr3 5925050 5925171 -153674612 + ORR1E LTR MaLR 224 350 -9 4 630 1768 206 118 15 chr3 5925247 5925766 -153674017 - RMER6C LTR ERVK -116 574 3 4 630 183 129 0 0 chr3 5926064 5926095 -153673688 + (TTCTCC)n Simple_repeat Simple_repeat 1 31 0 4 630 654 229 0 0 chr3 5926151 5926330 -153673453 + CT-rich Low_complexity Low_complexity 2 180 0 4 630 21 0 0 0 chr3 5926456 5926477 -153673306 + AT_rich Low_complexity Low_complexity 1 21 0 4 630 3187 173 46 2 chr3 5926614 5927198 -153672585 + L1Md_F LINE L1 55 664 -5855 4 630 1910 219 57 19 chr3 5927214 5927685 -153672098 - Lx5 LINE L1 -825 6225 5737 4 630 30834 91 19 3 chr3 5927688 5932727 -153667056 + L1Md_F2 LINE L1 465 5585 -298 4 630 7527 65 4 4 chr3 5932728 5933713 -153666070 + L1Md_F2 LINE L1 5587 6571 -11 4 630 788 92 0 8 chr3 5933717 5933837 -153665946 + (GAAAA)n Simple_repeat Simple_repeat 2 120 0 4 630 333 118 0 0 chr3 5933914 5933965 -153665818 + (TTTC)n Simple_repeat Simple_repeat 1 51 0 4 630 994 142 0 0 chr3 5933966 5934114 -153665669 - B1_Mus1 SINE Alu 0 148 1 4 630 233 258 0 61 chr3 5934230 5934296 -153665487 - Lx8 LINE L1 -332 7141 7080 4 630 189 0 0 0 chr3 5934690 5934711 -153665072 + (ATG)n Simple_repeat Simple_repeat 3 23 0 4 630 27 0 0 0 chr3 5935458 5935485 -153664298 + AT_rich Low_complexity Low_complexity 1 27 0 4 630 21 71 0 0 chr3 5935888 5935930 -153663853 + AT_rich Low_complexity Low_complexity 1 42 0 4 630 25 0 0 0 chr3 5936863 5936888 -153662895 + AT_rich Low_complexity Low_complexity 1 25 0 4 630 212 275 70 28 chr3 5937082 5937153 -153662630 + L2a LINE L2 3094 3167 -259 4 630 21 0 0 0 chr3 5937156 5937177 -153662606 + AT_rich Low_complexity Low_complexity 1 21 0 4 630 240 360 27 0 chr3 5938032 5938143 -153661640 + PB1D10 SINE Alu 1 114 -3 4 630 426 306 199 49 chr3 5938247 5938573 -153661210 + MLT2B5 LTR ERVL 8 382 -335 4 630 341 384 36 36 chr3 5938580 5938772 -153661011 + B3A SINE B2 1 192 -6 4 630 416 323 24 37 chr3 5938863 5939027 -153660756 + MLT2B5 LTR ERVL 373 534 -20 4 630 243 61 0 0 chr3 5939041 5939074 -153660709 + (TG)n Simple_repeat Simple_repeat 2 34 0 4 630 23 54 0 0 chr3 5939190 5939227 -153660556 + AT_rich Low_complexity Low_complexity 1 37 0 4 630 311 391 78 0 chr3 5939820 5939999 -153659784 - MLT2B5 LTR ERVL -41 514 322 4 630 7004 107 32 2 chr3 5940324 5941384 -153658399 - L1_Mus4 LINE L1 0 6636 5545 4 630 3679 122 10 15 chr3 5941381 5941997 -153657786 + MusHAL1 LINE L1 755 1367 -1345 4 630 8897 169 78 30 chr3 5941993 5943974 -153655809 - L1_Mus4 LINE L1 -561 5322 3240 4 630 348 172 0 33 chr3 5943982 5944042 -153655741 - RLTR1 LTR ERV1 -72 552 495 4 630 38871 50 4 5 chr3 5944043 5950365 -153649418 - L1Md_T LINE L1 0 6582 307 4 630 7641 130 9 56 chr3 5950477 5951415 -153648368 - MusHAL1 LINE L1 -640 2072 1178 4 630 270 0 0 0 chr3 5951415 5951445 -153648338 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 4 630 7641 130 9 56 chr3 5951445 5951968 -153647815 - MusHAL1 LINE L1 -1535 1177 681 4 630 8319 136 25 15 chr3 5951979 5953363 -153646420 + Lx2 LINE L1 5597 6994 -3 4 630 341 208 47 0 chr3 5953703 5953809 -153645974 - Lx9 LINE L1 -2 7642 7532 4 630 1796 237 0 53 chr3 5953867 5954339 -153645444 - Lx2B LINE L1 -1 6999 6553 4 630 1567 190 31 3 chr3 5954334 5954625 -153645158 + Lx2B LINE L1 6283 6581 -419 4 630 2414 236 13 7 chr3 5954624 5955178 -153644605 - Lx9 LINE L1 -359 7285 6729 4 630 514 338 159 23 chr3 5955307 5955658 -153644125 - Lx8 LINE L1 -457 7016 6618 4 630 1010 210 44 21 chr3 5955658 5955893 -153643890 + ORR1B2 LTR MaLR 73 310 -74 5 630 279 0 0 0 chr3 5956075 5956106 -153643677 + (CA)n Simple_repeat Simple_repeat 2 32 0 5 630 468 35 0 0 chr3 5956106 5956163 -153643620 + (GA)n Simple_repeat Simple_repeat 2 59 0 5 630 29 47 0 0 chr3 5958657 5958700 -153641083 + AT_rich Low_complexity Low_complexity 1 43 0 5 630 25 83 0 0 chr3 5959430 5959490 -153640293 + AT_rich Low_complexity Low_complexity 1 60 0 5 630 29 28 0 0 chr3 5959651 5959687 -153640096 + AT_rich Low_complexity Low_complexity 1 36 0 5 630 27 49 0 0 chr3 5961029 5961070 -153638713 + AT_rich Low_complexity Low_complexity 1 41 0 5 630 311 317 63 75 chr3 5961128 5961178 -153638605 - B3 SINE B2 -4 212 165 5 630 314 23 23 0 chr3 5961178 5961221 -153638562 + (TG)n Simple_repeat Simple_repeat 1 44 0 5 630 311 317 63 75 chr3 5961221 5961344 -153638439 - B3 SINE B2 -52 164 42 5 630 23 54 0 0 chr3 5961970 5962007 -153637776 + AT_rich Low_complexity Low_complexity 1 37 0 5 630 435 38 0 0 chr3 5962149 5962202 -153637581 + (TG)n Simple_repeat Simple_repeat 2 54 0 5 630 614 316 18 58 chr3 5962700 5962925 -153636858 + MTEb LTR MaLR 1 216 -163 5 630 752 182 0 63 chr3 5963373 5963531 -153636252 - Lx4A LINE L1 -668 6390 6243 5 630 2186 184 57 16 chr3 5963706 5964159 -153635624 - Lx4A LINE L1 -799 6259 5788 5 630 3182 174 89 8 chr3 5964157 5964753 -153635030 + Lx4A LINE L1 6405 7048 -10 5 630 314 45 0 22 chr3 5964757 5964802 -153634981 + (TAA)n Simple_repeat Simple_repeat 1 44 0 5 630 354 289 26 0 chr3 5964815 5964891 -153634892 - B3 SINE B2 -111 105 28 5 630 396 0 0 0 chr3 5964891 5964935 -153634848 + (TTA)n Simple_repeat Simple_repeat 2 45 0 5 630 1593 135 0 15 chr3 5964935 5965198 -153634585 - L1_Mus4 LINE L1 -22 6614 6356 5 630 236 233 66 40 chr3 5965198 5965274 -153634509 - B3A SINE B2 -119 79 2 5 630 270 0 0 0 chr3 5965540 5965570 -153634213 + (CA)n Simple_repeat Simple_repeat 1 30 0 5 630 242 350 0 49 chr3 5965604 5965706 -153634077 + MIR SINE MIR 162 258 -4 5 630 34 42 0 0 chr3 5965878 5965926 -153633857 + AT_rich Low_complexity Low_complexity 1 48 0 5 630 485 96 0 24 chr3 5967028 5967113 -153632670 - L1Md_F2 LINE L1 -8 6574 6492 5 630 1688 39 0 0 chr3 5967113 5967317 -153632466 + L1_Mm LINE L1 5295 5498 -385 5 630 210 200 16 16 chr3 5968467 5968528 -153631255 + GA-rich Low_complexity Low_complexity 4 64 0 5 630 288 0 0 0 chr3 5968529 5968561 -153631222 + (GA)n Simple_repeat Simple_repeat 1 32 0 5 630 840 39 0 0 chr3 5968630 5968734 -153631049 + (GAGAA)n Simple_repeat Simple_repeat 5 108 0 5 630 387 160 0 0 chr3 5969017 5969092 -153630691 + (TA)n Simple_repeat Simple_repeat 2 76 0 5 630 1020 39 0 0 chr3 5969410 5969539 -153630244 + (TC)n Simple_repeat Simple_repeat 2 130 0 5 630 1050 77 7 0 chr3 5969539 5969682 -153630101 - B1_Mm SINE Alu -2 145 2 5 630 3161 133 14 0 chr3 5969715 5970232 -153629551 - L1_Mm LINE L1 -2100 3783 3260 5 630 3447 70 5 0 chr3 5970242 5970684 -153629099 - L1_Mus1 LINE L1 0 6567 6124 5 630 3879 77 0 9 chr3 5970684 5971232 -153628551 + RLTR13C2 LTR ERVK 2 818 -215 5 630 11138 143 66 98 chr3 5971232 5972721 -153627062 - L1Md_T LINE L1 -38 6544 5008 5 630 2170 87 13 6 chr3 5972721 5973035 -153626748 + RLTR13C2 LTR ERVK 493 808 0 5 630 11138 143 66 98 chr3 5973035 5975551 -153624232 - L1Md_T LINE L1 -38 5007 2408 5 630 3328 33 5 5 chr3 5975551 5975947 -153623836 + MTA_Mm LTR MaLR 1 396 0 5 630 11138 182 85 126 chr3 5975947 5976591 -153623192 - L1Md_T LINE L1 -3476 2407 1760 5 630 6810 94 34 7 chr3 5976570 5977572 -153622211 + L1_Mus2 LINE L1 5565 6564 -2 5 630 33 0 0 0 chr3 5977584 5977617 -153622166 + AT_rich Low_complexity Low_complexity 1 33 0 5 630 39 50 0 0 chr3 5977879 5977939 -153621844 + AT_rich Low_complexity Low_complexity 1 60 0 5 630 2803 22 0 0 chr3 5978170 5978492 -153621291 + RLTRETN_Mm LTR ERVK 1 322 0 5 630 920 111 7 0 chr3 5979908 5980052 -153619731 + (GGAA)n Simple_repeat Simple_repeat 3 147 0 5 630 1956 59 0 8 chr3 5980524 5980781 -153619002 - L1Md_F2 LINE L1 -2 6580 6326 5 630 236 130 22 0 chr3 5980807 5980853 -153618930 + C-rich Low_complexity Low_complexity 2 48 0 5 630 1074 125 0 0 chr3 5980856 5981073 -153618710 + (TTC)n Simple_repeat Simple_repeat 1 217 0 5 630 555 43 0 0 chr3 5981073 5981143 -153618640 + (TC)n Simple_repeat Simple_repeat 1 70 0 5 630 765 190 42 0 chr3 5981256 5981398 -153618385 - B1_Mus1 SINE Alu 0 148 1 5 630 213 231 0 0 chr3 5982051 5982090 -153617693 + (CATATA)n Simple_repeat Simple_repeat 3 41 0 5 630 351 302 113 13 chr3 5983252 5983403 -153616380 + MER58A DNA MER1_type 27 192 -32 5 630 1616 36 0 0 chr3 5983424 5983617 -153616166 + B2_Mm1a SINE B2 1 193 0 5 630 21 36 0 0 chr3 5983812 5983840 -153615943 + AT_rich Low_complexity Low_complexity 1 28 0 5 630 429 272 32 117 chr3 5983929 5984083 -153615700 + B3A SINE B2 58 198 0 5 630 4522 258 59 53 chr3 5984259 5985732 -153614051 - Lx7 LINE L1 -243 7453 5972 5 630 3165 203 128 13 chr3 5985726 5986648 -153613135 - L1_Mur3 LINE L1 -3574 2306 1279 5 630 530 321 0 6 chr3 5986968 5987128 -153612655 + ORR1D1 LTR MaLR 5 163 -211 5 630 234 244 0 23 chr3 5987481 5987569 -153612214 + (CCAA)n Simple_repeat Simple_repeat 1 86 0 5 630 643 273 81 69 chr3 5987585 5987758 -153612025 + B3 SINE B2 17 191 -25 5 630 1628 91 9 4 chr3 5988051 5988284 -153611499 - L1_Mus3 LINE L1 -7 6631 6398 5 630 3134 136 2 16 chr3 5988293 5988801 -153610982 + L1_Mm LINE L1 5235 5735 -148 5 630 2267 215 118 82 chr3 5988801 5989671 -153610112 - RLTR13D6 LTR ERVK 0 902 1 5 630 2995 83 0 0 chr3 5989671 5990070 -153609713 + L1_Mus3 LINE L1 5730 6128 -510 5 630 2275 158 25 0 chr3 5990145 5990537 -153609246 + Lx3A LINE L1 6578 6979 -2 5 630 262 43 64 0 chr3 5990697 5990744 -153609039 + (TTTG)n Simple_repeat Simple_repeat 3 52 0 5 630 1046 109 0 0 chr3 5990744 5990891 -153608892 - B1_Mus2 SINE Alu 0 147 1 5 630 342 0 0 0 chr3 5991119 5991157 -153608626 + (TA)n Simple_repeat Simple_repeat 2 39 0 5 630 8004 115 23 5 chr3 5992131 5992962 -153606821 - L1_Mm LINE L1 -1568 4315 3478 5 630 283 0 47 23 chr3 5992962 5993005 -153606778 + (TTTG)n Simple_repeat Simple_repeat 1 44 0 5 630 8004 115 23 5 chr3 5993005 5993443 -153606340 - L1_Mm LINE L1 -2406 3477 3024 5 630 440 245 10 19 chr3 5993489 5993593 -153606190 + MTC LTR MaLR 314 416 -5 5 630 425 300 13 67 chr3 5993810 5994035 -153605748 + Lx8 LINE L1 5789 6001 -1472 5 630 274 290 50 0 chr3 5994020 5994129 -153605654 + Lx4B LINE L1 6555 6667 -391 5 630 1338 218 4 8 chr3 5994139 5994398 -153605385 + L1VL4 LINE L1 244 501 -5801 5 630 2372 232 65 44 chr3 5994405 5994708 -153605075 + MusHAL1 LINE L1 394 708 -5949 5 630 1066 89 7 0 chr3 5994708 5994854 -153604929 + B1_Mm SINE Alu 1 147 0 5 630 2615 173 37 20 chr3 5994854 5995302 -153604481 + MusHAL1 LINE L1 709 1159 -2756 5 630 387 0 0 0 chr3 5995302 5995345 -153604438 + (CA)n Simple_repeat Simple_repeat 2 44 0 5 630 16871 188 23 9 chr3 5995345 5996934 -153602849 + MusHAL1 LINE L1 1160 2793 -3093 5 630 311 65 22 0 chr3 5996934 5996980 -153602803 + (CAA)n Simple_repeat Simple_repeat 1 47 0 5 630 16871 195 23 10 chr3 5996980 5999079 -153600704 + MusHAL1 LINE L1 2794 4902 -984 5 630 3602 172 20 18 chr3 5999078 5999735 -153600048 + Lx2 LINE L1 5977 6634 -363 5 630 1133 170 52 0 chr3 5999735 5999947 -153599836 + Lx2 LINE L1 6775 6997 0 5 630 227 227 0 0 chr3 5999953 5999997 -153599786 + Lx6 LINE L1 7025 7068 -392 5 630 999 290 59 19 chr3 6000023 6000343 -153599440 + Lx6 LINE L1 7125 7457 -3 1 630 1226 335 27 25 chr3 6000472 6000999 -153598784 + Lx8 LINE L1 6139 6666 -807 2 630 336 275 121 25 chr3 6001071 6001269 -153598514 + Lx8 LINE L1 7239 7455 -18 2 630 314 329 55 43 chr3 6001752 6001987 -153597796 + L1MA7 LINE L1 5861 6098 -193 3 630 4344 111 5 2 chr3 6004105 6004719 -153595064 + Lx LINE L1 5629 6244 -410 4 630 269 343 71 7 chr3 6004759 6004900 -153594883 - MLT1B LTR MaLR -240 150 1 5 630 30 45 0 0 chr3 6005002 6005046 -153594737 + AT_rich Low_complexity Low_complexity 1 44 0 6 630 310 233 14 70 chr3 6005706 6005849 -153593934 - L1MA9 LINE L1 -1 6311 6177 7 630 247 258 28 47 chr3 6005900 6006006 -153593777 - L1MA9 LINE L1 -561 5730 5627 7 630 325 77 50 25 chr3 6006181 6006261 -153593522 + A-rich Low_complexity Low_complexity 3 84 0 8 630 268 333 33 25 chr3 6006385 6006505 -153593278 + ORR1E LTR MaLR 77 197 -162 9 630 216 0 0 0 chr3 6006594 6006618 -153593165 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1 630 412 258 94 39 chr3 6006685 6006919 -153592864 + L1M2 LINE L1 4456 4702 -1441 1 630 329 282 133 13 chr3 6007165 6007323 -153592460 - MER44A DNA MER2_type -95 244 68 1 630 913 343 56 20 chr3 6007317 6007713 -153592070 - Tigger7 DNA MER2_type -2080 411 2 1 630 685 253 24 6 chr3 6010537 6010704 -153589079 + Lx5 LINE L1 6556 6725 -325 1 630 3767 115 83 13 chr3 6011026 6011653 -153588130 + Lx LINE L1 5978 6648 -6 1 630 32 26 0 0 chr3 6012251 6012290 -153587493 + AT_rich Low_complexity Low_complexity 1 39 0 1 630 3011 130 15 87 chr3 6012566 6013163 -153586620 + Lx3A LINE L1 5741 6294 -687 1 630 24559 84 12 3 chr3 6013159 6017095 -153582688 - L1Md_F2 LINE L1 -241 6341 2369 1 630 4119 159 60 26 chr3 6017093 6018147 -153581636 - L1VL1 LINE L1 -2390 1308 215 1 630 453 323 107 110 chr3 6018280 6018617 -153581166 - MTE2b LTR MaLR -43 336 1 2 630 33 25 0 0 chr3 6019639 6019679 -153580104 + AT_rich Low_complexity Low_complexity 1 40 0 2 630 204 67 0 0 chr3 6020778 6020808 -153578975 + (CA)n Simple_repeat Simple_repeat 2 31 0 2 630 6093 133 47 19 chr3 6020835 6022270 -153577513 + L1_Mus4 LINE L1 5163 6636 0 2 630 21 0 0 0 chr3 6022270 6022291 -153577492 + AT_rich Low_complexity Low_complexity 1 21 0 2 630 6614 149 41 11 chr3 6022306 6023484 -153576299 + Lx2 LINE L1 5785 6997 0 2 630 366 54 0 0 chr3 6023604 6023660 -153576123 + L1_Mus3 LINE L1 6578 6633 -5 2 630 21 36 0 0 chr3 6024056 6024084 -153575699 + AT_rich Low_complexity Low_complexity 1 28 0 2 630 340 350 11 11 chr3 6024216 6024395 -153575388 + (TG)n Simple_repeat Simple_repeat 2 180 0 2 630 491 341 85 11 chr3 6024451 6024721 -153575062 - B4 SINE B4 -2 290 1 2 630 188 341 114 35 chr3 6025004 6025232 -153574551 + L2 LINE L2 2559 2804 -615 3 630 288 200 18 9 chr3 6025479 6025590 -153574193 + GA-rich Low_complexity Low_complexity 1 112 0 3 630 22 35 0 0 chr3 6025794 6025823 -153573960 + AT_rich Low_complexity Low_complexity 1 29 0 3 630 640 228 7 33 chr3 6026070 6026088 -153573695 + ID_B1 SINE B4 70 215 -9 3 630 1039 61 0 0 chr3 6026088 6026220 -153573563 + B1_Mm SINE Alu 7 138 -9 3 630 2356 146 26 14 chr3 6026317 6026742 -153573041 + Lx2 LINE L1 5931 6360 -637 3 630 27 29 0 0 chr3 6028333 6028367 -153571416 + AT_rich Low_complexity Low_complexity 1 34 0 3 631 616 128 38 0 chr3 6029349 6029482 -153570301 + (TA)n Simple_repeat Simple_repeat 1 138 0 3 631 370 342 73 5 chr3 6029796 6030016 -153569767 - LTR80B LTR ERVL -61 523 289 3 631 318 318 97 59 chr3 6030173 6030410 -153569373 - B4 SINE B4 -1 291 46 3 631 381 131 0 0 chr3 6030555 6030616 -153569167 + (A)n Simple_repeat Simple_repeat 1 61 0 4 631 2231 160 8 15 chr3 6030844 6031238 -153568545 - ORR1B1 LTR MaLR -3 391 1 4 631 668 213 47 65 chr3 6031261 6031469 -153568314 - MT2B LTR ERVL -300 193 1 4 631 813 21 0 0 chr3 6031815 6031910 -153567873 + (TTC)n Simple_repeat Simple_repeat 3 97 0 4 631 5060 99 4 4 chr3 6031915 6032635 -153567148 - L1_Mus3 LINE L1 -13 6625 5906 4 631 437 168 54 70 chr3 6033115 6033301 -153566482 + RMER17C LTR ERVK 90 272 -138 4 631 26 0 0 0 chr3 6033457 6033483 -153566300 + AT_rich Low_complexity Low_complexity 1 26 0 4 631 284 261 115 98 chr3 6033972 6034206 -153565577 + RLTR15 LTR ERVK 105 342 -17 4 631 581 295 39 56 chr3 6035136 6035420 -153564363 + MYSERV-int LTR ERVK 3775 4053 -2497 4 631 3945 141 14 6 chr3 6035509 6036150 -153563633 - Lx3A LINE L1 0 6981 6336 4 631 5060 144 7 9 chr3 6036151 6037020 -153562763 - L1_Mur1 LINE L1 -350 5536 4670 5 631 373 117 0 38 chr3 6037020 6037100 -153562683 + (TTTA)n Simple_repeat Simple_repeat 2 78 0 5 631 18001 189 12 79 chr3 6037103 6043827 -153555956 - L1_Mus3 LINE L1 0 6638 395 5 631 11016 144 77 32 chr3 6043851 6047748 -153552035 - L1_Mur1 LINE L1 -1206 4671 36 5 631 6379 107 66 18 chr3 6047770 6049151 -153550632 - Lx3_Mus LINE L1 -5 7004 5541 5 631 5288 114 2 0 chr3 6050205 6050996 -153548787 - Lx3_Mus LINE L1 -359 5527 4735 5 631 5522 144 21 28 chr3 6050996 6051792 -153547991 + RMER17B LTR ERVK 1 808 -150 5 631 2510 120 45 13 chr3 6051792 6052188 -153547595 - RLTR9E LTR ERVK 0 409 1 5 631 5522 144 21 28 chr3 6052188 6052355 -153547428 + RMER17B LTR ERVK 809 957 -1 5 631 1534 273 69 76 chr3 6052478 6053369 -153546414 + MYSERV-int LTR ERVK 4331 5165 -1385 4 631 265 227 77 39 chr3 6053447 6053525 -153546258 + RMER4B LTR ERVK 458 538 -47 5 631 694 232 78 15 chr3 6053525 6053661 -153546122 + MYSERV-int LTR ERVK 7873 7919 -1040 4 631 300 53 0 0 chr3 6053661 6053699 -153546084 + (TA)n Simple_repeat Simple_repeat 1 38 0 5 631 694 174 30 6 chr3 6053699 6053823 -153545960 + MYSERV-int LTR ERVK 7920 8043 -916 4 631 1535 185 59 0 chr3 6053824 6054127 -153545656 + ORR1A4 LTR MaLR 1 321 -8 5 631 1244 208 8 12 chr3 6054131 6054375 -153545408 + ORR1A4-int LTR MaLR 1 243 -1720 5 631 2045 109 3 73 chr3 6054376 6054733 -153545050 - IAPLTR1a_Mm LTR ERVK -5 332 1 5 631 23299 9 4 0 chr3 6054733 6057679 -153542104 - IAPEz-int LTR ERVK 0 6481 3525 5 631 919 81 24 0 chr3 6057679 6057802 -153541981 - IAPEz-int LTR ERVK -2770 4910 4785 6 631 1823 107 8 0 chr3 6057799 6058051 -153541732 - IAPEz-int LTR ERVK -5183 2497 2244 6 631 961 50 0 0 chr3 6058046 6058165 -153541618 - IAPEz-int LTR ERVK -5004 1477 1359 6 631 4930 57 13 36 chr3 6058165 6058837 -153540946 - IAPEz-int LTR ERVK -5819 662 6 6 631 2047 106 3 78 chr3 6058837 6059196 -153540587 - IAPLTR1a_Mm LTR ERVK -5 332 1 6 631 1395 249 3 34 chr3 6059199 6059527 -153540256 + ORR1A4-int LTR MaLR 240 557 -1406 5 631 7573 108 20 1 chr3 6059527 6061203 -153538580 - L1_Mus2 LINE L1 -183 6383 4672 6 631 3018 33 3 35 chr3 6061203 6061580 -153538203 + RLTR10B2 LTR ERVK 1 365 0 6 631 1348 47 6 6 chr3 6061580 6061752 -153538031 + MMERVK10C-int LTR ERVK 1 172 -7409 6 631 242 260 0 0 chr3 6061752 6061802 -153537981 + RLTR27 LTR ERVK 223 272 -37 6 631 364 65 0 0 chr3 6061802 6061848 -153537935 + MMERVK10C-int LTR ERVK 222 267 -7314 6 631 596 82 58 29 chr3 6061937 6062075 -153537708 + GA-rich Low_complexity Low_complexity 3 144 0 6 631 346 89 0 0 chr3 6062075 6062120 -153537663 + RLTR10-int LTR ERVK 93 137 -6405 6 631 2719 67 0 0 chr3 6062123 6062464 -153537319 + RLTR10-int LTR ERVK 652 992 -995 6 631 3809 22 81 0 chr3 6062532 6062988 -153536795 - MT2_Mm LTR ERVL 0 493 1 6 631 483 305 30 30 chr3 6063020 6063345 -153536438 + RLTR10-int LTR ERVK 822 1061 -5481 6 631 1558 96 100 0 chr3 6063357 6063586 -153536197 + RLTR10-int LTR ERVK 5004 5255 -1287 6 631 4181 152 13 3 chr3 6063590 6064269 -153535514 + IAPEY3-int LTR ERVK 6995 7680 0 6 631 2843 33 0 118 chr3 6064269 6064683 -153535100 + RLTR10B2 LTR ERVK 1 365 0 6 631 17718 167 16 18 chr3 6064683 6068961 -153530822 - L1VL2 LINE L1 -1206 4677 404 6 631 560 173 0 9 chr3 6068986 6069091 -153530692 - L1_Mur2 LINE L1 -622 5255 5152 6 631 4839 151 69 15 chr3 6069079 6071057 -153528726 - L1VL2 LINE L1 -1371 2543 308 7 631 442 163 73 42 chr3 6071060 6071156 -153528627 - L1VL2 LINE L1 -6102 233 135 7 631 3791 228 133 19 chr3 6071157 6071741 -153528042 - L1_Mur3 LINE L1 -3139 2741 2080 7 631 201 74 0 0 chr3 6071741 6071768 -153528015 + (TGG)n Simple_repeat Simple_repeat 1 27 0 7 631 438 20 0 0 chr3 6071769 6071820 -153527963 + (TG)n Simple_repeat Simple_repeat 2 52 0 7 631 3791 228 133 19 chr3 6071820 6072325 -153527458 - L1_Mur3 LINE L1 -3801 2079 1549 7 631 381 43 0 0 chr3 6072325 6072372 -153527411 + (TA)n Simple_repeat Simple_repeat 2 48 0 7 631 3791 228 133 19 chr3 6072372 6072498 -153527285 - L1_Mur3 LINE L1 -4332 1548 1384 7 631 976 251 54 35 chr3 6072489 6072920 -153526863 - L1_Mur3 LINE L1 -5824 1262 892 7 631 309 89 0 0 chr3 6073338 6073383 -153526400 + (TG)n Simple_repeat Simple_repeat 1 45 0 7 631 298 392 44 22 chr3 6073401 6073581 -153526202 - B4A SINE B4 -6 286 103 7 631 28 29 0 0 chr3 6073646 6073681 -153526102 + AT_rich Low_complexity Low_complexity 1 35 0 7 631 263 324 64 49 chr3 6074107 6074642 -153525141 - L1_Mur3 LINE L1 -3129 2751 2209 7 631 857 92 0 0 chr3 6074646 6074766 -153525017 - B1_Mus2 SINE Alu 0 147 28 8 631 7485 53 0 11 chr3 6074953 6075927 -153523856 + L1_Mm LINE L1 3712 4674 -1209 8 631 11871 65 2 5 chr3 6075925 6076831 -153522952 - L1_Mm LINE L1 -583 5300 4398 8 631 6121 60 20 31 chr3 6076831 6077662 -153522121 - RLTR13B2 LTR ERVK 0 822 1 8 631 11871 65 2 5 chr3 6077662 6078327 -153521456 - L1_Mm LINE L1 -1486 4397 3732 8 631 365 316 50 9 chr3 6078329 6078648 -153521135 + L1_Rod LINE L1 2677 3008 -3135 8 631 467 294 59 55 chr3 6078667 6079122 -153520661 + L1_Rod LINE L1 4890 5349 -537 8 631 797 250 169 44 chr3 6079141 6079501 -153520282 - MTD LTR MaLR -14 405 1 8 631 492 293 99 17 chr3 6079502 6079893 -153519890 + L1_Rod LINE L1 5352 5758 -89 8 631 462 354 42 0 chr3 6079989 6080181 -153519602 - MER44D DNA MER2_type -504 201 2 8 631 1219 132 61 5 chr3 6080247 6080460 -153519323 + Lx LINE L1 6311 6535 -119 8 631 318 132 0 0 chr3 6080467 6080520 -153519263 + (CA)n Simple_repeat Simple_repeat 2 54 0 8 631 450 94 0 0 chr3 6080546 6080610 -153519173 + (TA)n Simple_repeat Simple_repeat 1 64 0 9 631 435 267 14 22 chr3 6080989 6081127 -153518656 + Lx2B LINE L1 6859 6995 -5 9 631 21 36 0 0 chr3 6081362 6081390 -153518393 + AT_rich Low_complexity Low_complexity 1 28 0 9 631 270 81 0 0 chr3 6081865 6081902 -153517881 + (T)n Simple_repeat Simple_repeat 1 37 0 9 631 225 0 0 0 chr3 6082764 6082789 -153516994 + (TGAA)n Simple_repeat Simple_repeat 2 26 0 9 631 210 163 52 42 chr3 6082796 6082892 -153516891 + (TA)n Simple_repeat Simple_repeat 1 97 0 9 631 3664 67 0 10 chr3 6082905 6083386 -153516397 + L1Md_F2 LINE L1 6107 6582 0 9 631 233 241 9 0 chr3 6083577 6083689 -153516094 + (TA)n Simple_repeat Simple_repeat 1 113 0 9 631 914 293 8 8 chr3 6084368 6084633 -153515150 - Lx6 LINE L1 -34 7426 7162 9 631 219 88 0 0 chr3 6084736 6084770 -153515013 + (TC)n Simple_repeat Simple_repeat 1 34 0 9 631 213 108 0 0 chr3 6084770 6084807 -153514976 + (TG)n Simple_repeat Simple_repeat 2 38 0 1 631 1145 95 6 0 chr3 6085292 6085461 -153514322 + (CATATA)n Simple_repeat Simple_repeat 4 173 0 1 631 21 82 0 0 chr3 6085464 6085513 -153514270 + AT_rich Low_complexity Low_complexity 1 49 0 1 631 273 236 32 11 chr3 6086036 6086130 -153513653 + (TA)n Simple_repeat Simple_repeat 2 97 0 1 631 2312 63 119 11 chr3 6087039 6087391 -153512392 + RLTR10 LTR ERVK 1 390 0 1 631 576 156 163 0 chr3 6087531 6087666 -153512117 - RLTR47_MM LTR ERV1 0 532 376 1 631 278 363 8 16 chr3 6087966 6088092 -153511691 - Lx8 LINE L1 -212 7261 7137 1 631 1856 167 59 154 chr3 6088099 6088574 -153511209 + RLTR23 LTR ERV1 1 430 0 1 631 1266 234 92 23 chr3 6088574 6088890 -153510893 - ORR1D1 LTR MaLR -4 370 27 1 631 342 0 0 0 chr3 6088890 6088928 -153510855 + (TG)n Simple_repeat Simple_repeat 2 39 0 1 631 1266 234 92 23 chr3 6088928 6088957 -153510826 - ORR1D1 LTR MaLR -348 26 1 1 631 385 39 0 19 chr3 6089011 6089063 -153510720 + RLTR31_Mm LTR ERVK 1 51 -510 1 631 1442 181 0 0 chr3 6089063 6089311 -153510472 - L1_Mur2 LINE L1 -60 5817 5570 1 631 279 326 46 15 chr3 6089425 6089621 -153510162 + L1M2 LINE L1 3586 3787 -2356 1 631 180 200 0 0 chr3 6089793 6089833 -153509950 + (TA)n Simple_repeat Simple_repeat 1 40 0 1 631 561 273 109 24 chr3 6089916 6090491 -153509292 + L1M2 LINE L1 3930 4596 -1544 1 631 23 33 0 0 chr3 6090491 6090521 -153509262 + AT_rich Low_complexity Low_complexity 1 30 0 1 631 6112 180 59 19 chr3 6090528 6092247 -153507536 - Lx2B LINE L1 -4 6996 5207 1 631 221 150 0 0 chr3 6092247 6092287 -153507496 + (CAAAAA)n Simple_repeat Simple_repeat 4 43 0 1 631 727 297 40 99 chr3 6092363 6092984 -153506799 + L1M2 LINE L1 4693 5294 -849 1 631 388 290 54 16 chr3 6093013 6093199 -153506584 + L1M2 LINE L1 5365 5557 -740 1 631 421 285 65 0 chr3 6093315 6093438 -153506345 - MTD LTR MaLR 0 419 289 1 631 390 341 98 6 chr3 6093449 6093623 -153506160 - MTD LTR MaLR -229 190 1 1 631 679 245 7 0 chr3 6093699 6093846 -153505937 + MTD LTR MaLR 6 153 -266 1 631 8404 182 178 15 chr3 6093846 6094054 -153505729 + L1_Mus1 LINE L1 3551 3758 -2119 1 631 5269 120 110 16 chr3 6094054 6094870 -153504913 + RLTR13C1 LTR ERVK 1 890 -93 1 631 390 21 0 0 chr3 6094870 6094917 -153504866 + (TTG)n Simple_repeat Simple_repeat 2 48 0 1 631 5269 120 110 16 chr3 6094917 6094998 -153504785 + RLTR13C1 LTR ERVK 891 982 -1 1 631 10099 116 9 8 chr3 6094998 6097472 -153502311 + L1_Mus1 LINE L1 3759 6567 0 1 631 351 121 0 0 chr3 6097653 6097711 -153502072 + (TG)n Simple_repeat Simple_repeat 1 58 0 1 631 182 91 30 0 chr3 6097711 6097744 -153502039 + (GA)n Simple_repeat Simple_repeat 2 35 0 1 631 33 85 0 0 chr3 6098336 6098418 -153501365 + AT_rich Low_complexity Low_complexity 1 82 0 1 631 360 0 0 0 chr3 6098553 6098593 -153501190 + (TTTA)n Simple_repeat Simple_repeat 4 43 0 1 631 211 256 0 0 chr3 6098613 6098656 -153501127 + GA-rich Low_complexity Low_complexity 3 45 0 1 631 360 268 12 0 chr3 6098692 6098774 -153501009 - RSINE1 SINE B4 -81 84 2 1 631 347 0 23 0 chr3 6099202 6099245 -153500538 + (TTA)n Simple_repeat Simple_repeat 2 45 0 1 631 898 244 39 0 chr3 6099359 6099564 -153500219 + B3 SINE B2 1 213 -3 1 631 1873 139 115 16 chr3 6100855 6101220 -153498563 - RLTR9D LTR ERVK -2 401 1 1 631 270 278 43 43 chr3 6101542 6101636 -153498147 - MER50-int LTR ERV1 -6816 389 296 1 631 25 31 0 0 chr3 6101917 6101949 -153497834 + AT_rich Low_complexity Low_complexity 1 32 0 1 631 261 0 0 0 chr3 6106380 6106409 -153493374 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1 631 24 32 0 0 chr3 6106543 6106574 -153493209 + AT_rich Low_complexity Low_complexity 1 31 0 1 631 339 85 0 0 chr3 6106931 6106978 -153492805 + (TA)n Simple_repeat Simple_repeat 2 48 0 1 631 402 120 0 0 chr3 6107341 6107416 -153492367 + (TG)n Simple_repeat Simple_repeat 2 76 0 1 631 24 0 0 0 chr3 6108220 6108244 -153491539 + AT_rich Low_complexity Low_complexity 1 24 0 1 631 396 291 18 0 chr3 6109614 6109724 -153490059 - PB1D10 SINE Alu -5 112 1 1 631 1305 68 0 0 chr3 6116058 6116235 -153483548 + (TTAGGG)n Simple_repeat Simple_repeat 2 178 0 1 631 2065 208 56 71 chr3 6116587 6117125 -153482658 - Lx2B LINE L1 -14 6986 6457 1 631 403 214 115 70 chr3 6117339 6117495 -153482288 + L1MA7 LINE L1 6057 6219 -72 1 631 212 156 45 30 chr3 6117579 6117645 -153482138 + (TTATA)n Simple_repeat Simple_repeat 1 67 0 1 631 206 264 0 0 chr3 6117918 6117971 -153481812 - L2a LINE L2 -18 3408 3356 1 631 387 0 0 0 chr3 6118066 6118109 -153481674 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 631 271 357 102 16 chr3 6118256 6118384 -153481399 - B4 SINE B4 -118 174 36 1 631 344 221 142 0 chr3 6118450 6118577 -153481206 - Lx9 LINE L1 -6 7638 7494 1 631 1023 293 40 46 chr3 6118689 6119061 -153480722 + ORR1D2 LTR MaLR 1 370 0 1 631 262 273 0 0 chr3 6119573 6119638 -153480145 - ID4_ SINE ID -4 79 15 1 631 491 243 102 53 chr3 6120330 6120517 -153479266 - Lx9 LINE L1 -188 7456 7261 1 631 3748 70 16 0 chr3 6120863 6121360 -153478423 + L1_Mus3 LINE L1 5843 6347 -291 1 631 786 90 22 8 chr3 6121356 6121490 -153478293 + L1_Mus3 LINE L1 6500 6635 -3 1 631 749 116 0 0 chr3 6121584 6121696 -153478087 + ORR1B1 LTR MaLR 283 394 0 1 631 273 75 0 0 chr3 6121748 6121788 -153477995 + (TA)n Simple_repeat Simple_repeat 2 41 0 1 631 27 0 0 0 chr3 6121829 6121856 -153477927 + AT_rich Low_complexity Low_complexity 1 27 0 1 631 450 0 0 0 chr3 6123787 6123837 -153475946 + (CA)n Simple_repeat Simple_repeat 2 51 0 1 631 721 86 0 33 chr3 6124036 6124156 -153475627 - Lx LINE L1 -5 6649 6534 1 631 2827 113 8 9 chr3 6124157 6124723 -153475060 - Lx LINE L1 -653 6001 5436 1 631 1100 89 0 0 chr3 6126059 6126205 -153473578 + B1_Mus1 SINE Alu 3 148 0 1 631 26 88 0 0 chr3 6126622 6126690 -153473093 + AT_rich Low_complexity Low_complexity 1 68 0 1 631 369 0 0 0 chr3 6126765 6126806 -153472977 + (TA)n Simple_repeat Simple_repeat 2 42 0 1 631 3488 40 7 5 chr3 6126948 6127379 -153472404 + L1Md_F2 LINE L1 6138 6569 -13 1 631 261 0 0 0 chr3 6127463 6127492 -153472291 + (CA)n Simple_repeat Simple_repeat 2 30 0 1 631 2648 56 3 0 chr3 6128096 6128435 -153471348 - IAPLTR4 LTR ERVK -5 340 1 1 631 869 343 0 0 chr3 6128878 6129126 -153470657 + RMER1B Other Other 7 254 -812 1 631 243 264 80 40 chr3 6129679 6129754 -153470029 - PB1 SINE Alu -26 101 24 1 631 336 176 0 0 chr3 6129756 6129824 -153469959 + (TA)n Simple_repeat Simple_repeat 1 68 0 1 631 639 85 13 11 chr3 6129824 6129935 -153469848 - B1_Mm SINE Alu -1 119 2 1 631 22 35 0 0 chr3 6129936 6129965 -153469818 + AT_rich Low_complexity Low_complexity 1 29 0 1 631 290 222 16 0 chr3 6130005 6130068 -153469715 - PB1D10 SINE Alu -2 115 52 1 631 25 35 0 65 chr3 6132129 6132168 -153467615 + AT_rich Low_complexity Low_complexity 1 36 0 1 631 1020 87 14 0 chr3 6132168 6132306 -153467477 + B1_Mus1 SINE Alu 3 142 -6 1 631 25 35 0 65 chr3 6132306 6132328 -153467455 + AT_rich Low_complexity Low_complexity 1 22 0 1 631 4717 51 0 0 chr3 6132358 6133019 -153466764 - L1Md_F3 LINE L1 -637 5947 5287 1 631 748 294 21 32 chr3 6134211 6134496 -153465287 - Lx9 LINE L1 -555 7089 6808 1 631 389 172 11 0 chr3 6134496 6134589 -153465194 + (CA)n Simple_repeat Simple_repeat 1 94 0 1 631 486 0 0 0 chr3 6135045 6135099 -153464684 + (TA)n Simple_repeat Simple_repeat 1 54 0 1 631 2098 102 31 19 chr3 6138248 6138569 -153461214 - IAPLTR2b LTR ERVK -2 325 1 1 631 805 260 81 0 chr3 6140453 6140676 -153459107 - Lx9 LINE L1 -669 6975 6735 1 631 1917 220 73 8 chr3 6140709 6141241 -153458542 + Lx9 LINE L1 7060 7626 -18 1 631 286 305 37 0 chr3 6141664 6141746 -153458037 + MER3 DNA MER1_type 32 116 -93 1 631 1617 78 0 0 chr3 6141762 6141979 -153457804 - L1_Mus1 LINE L1 -627 5256 5040 1 631 7158 78 11 6 chr3 6141981 6143273 -153456510 + L1_Mus1 LINE L1 5269 6565 -2 1 631 699 302 28 14 chr3 6143551 6143766 -153456017 + MIRb SINE MIR 17 234 -34 1 631 26 64 0 0 chr3 6144216 6144263 -153455520 + AT_rich Low_complexity Low_complexity 1 47 0 1 631 23 86 0 0 chr3 6144616 6144674 -153455109 + AT_rich Low_complexity Low_complexity 1 58 0 1 631 29243 81 7 1 chr3 6145096 6147294 -153452489 - L1Md_F2 LINE L1 -5 6577 4366 1 631 1662 193 13 3 chr3 6147294 6147600 -153452183 + RLTR27 LTR ERVK 1 309 0 1 631 29243 88 7 1 chr3 6147600 6150198 -153449585 - L1Md_F2 LINE L1 -1518 4365 1753 1 631 7344 157 21 27 chr3 6150189 6150762 -153449021 - L1_Mur1 LINE L1 -1261 2651 2080 1 631 249 83 0 0 chr3 6150762 6150798 -153448985 + (TTG)n Simple_repeat Simple_repeat 2 37 0 1 631 7344 157 21 27 chr3 6150798 6151084 -153448699 - L1_Mur1 LINE L1 -1833 2079 1797 1 631 450 0 0 0 chr3 6151084 6151134 -153448649 + (TTTTG)n Simple_repeat Simple_repeat 2 51 0 1 631 943 97 29 15 chr3 6151134 6151270 -153448513 - B1_Mus1 SINE Alu -10 138 1 1 631 7344 179 17 21 chr3 6151270 6152456 -153447327 - L1_Mur1 LINE L1 -2116 1796 575 1 631 30 45 0 0 chr3 6152513 6152557 -153447226 + AT_rich Low_complexity Low_complexity 1 44 0 1 631 36 23 0 0 chr3 6152992 6153035 -153446748 + AT_rich Low_complexity Low_complexity 1 43 0 1 631 2663 141 141 14 chr3 6153878 6154381 -153445402 - RMER2 LTR ERV1 0 567 1 1 631 24 0 0 0 chr3 6155101 6155125 -153444658 + AT_rich Low_complexity Low_complexity 1 24 0 1 631 691 177 7 34 chr3 6155649 6155731 -153444052 - Lx6 LINE L1 -4 7456 7378 1 631 2196 159 83 55 chr3 6155731 6156165 -153443618 + RLTR41 LTR ERV1 1 446 0 1 631 691 177 7 34 chr3 6156165 6156228 -153443555 - Lx6 LINE L1 -83 7377 7315 1 631 23 54 0 0 chr3 6156232 6156269 -153443514 + AT_rich Low_complexity Low_complexity 1 37 0 1 631 333 17 0 92 chr3 6157396 6157461 -153442322 + (CAAAA)n Simple_repeat Simple_repeat 2 60 0 1 631 3474 47 28 0 chr3 6157547 6157971 -153441812 - RLTR10C LTR ERVK 0 436 1 1 631 7319 48 3 52 chr3 6157971 6158955 -153440828 - MMERVK10C-int LTR ERVK 0 7581 6646 1 78 41078 46 1 3 chr3 6158941 6163895 -153435888 - MMERVK10C-int LTR ERVK -1771 5810 870 1 632 1391 97 36 3 chr3 6163893 6164195 -153435588 - MMERVK10C-int LTR ERVK -7182 399 1 1 632 3388 57 28 0 chr3 6164195 6164617 -153435166 - RLTR10C LTR ERVK 0 436 3 1 632 2135 263 68 13 chr3 6168016 6168563 -153431220 - Lx6 LINE L1 -140 7320 6744 1 632 581 297 36 5 chr3 6168619 6168812 -153430971 + B3 SINE B2 4 202 -14 1 632 828 348 47 22 chr3 6169621 6169982 -153429801 - MTE2b LTR MaLR -8 371 2 1 632 1194 189 109 102 chr3 6170103 6170517 -153429266 + RMER16 LTR ERVK 1 493 -40 1 632 466 125 0 33 chr3 6170518 6170550 -153429233 + polypyrimidine Low_complexity Low_complexity 59 88 0 2 632 1349 61 0 6 chr3 6170550 6170731 -153429052 + (TTC)n Simple_repeat Simple_repeat 1 180 0 2 632 466 125 0 33 chr3 6170731 6170789 -153428994 + polypyrimidine Low_complexity Low_complexity 1 58 0 2 632 306 179 44 15 chr3 6170789 6170857 -153428926 + RMER16 LTR ERVK 464 533 0 1 632 1651 237 29 11 chr3 6171023 6171402 -153428381 + ORR1B1 LTR MaLR 1 386 -8 2 632 22 35 0 0 chr3 6171572 6171601 -153428182 + AT_rich Low_complexity Low_complexity 1 29 0 2 632 3744 126 9 0 chr3 6172092 6172672 -153427111 - L1_Mus3 LINE L1 -6 6632 6048 2 632 4466 87 31 2 chr3 6172674 6173540 -153426243 + L1_Mus3 LINE L1 5158 6064 -502 2 632 229 220 0 78 chr3 6173598 6173662 -153426121 - ORR1B2 LTR MaLR -8 359 301 2 632 516 300 106 68 chr3 6173907 6174200 -153425583 + RLTR9A LTR ERVK 65 368 0 2 632 591 15 0 0 chr3 6174560 6174628 -153425155 + (GA)n Simple_repeat Simple_repeat 1 68 0 2 632 7958 204 96 66 chr3 6174744 6178221 -153421562 + RMER16-int LTR ERVK 249 4094 -3312 1 632 275 156 0 0 chr3 6178228 6178273 -153421510 + Lx9 LINE L1 6881 6925 -719 2 632 1043 285 71 5 chr3 6178331 6178754 -153421029 - L1_Rod LINE L1 -6253 919 469 2 632 215 229 0 0 chr3 6179129 6179177 -153420606 + (TATATG)n Simple_repeat Simple_repeat 1 48 0 2 632 2337 291 67 19 chr3 6179196 6180116 -153419667 + Lx9 LINE L1 6307 7271 -373 2 632 540 248 112 27 chr3 6180147 6180441 -153419342 + Lx9 LINE L1 7325 7643 -1 2 632 579 287 63 15 chr3 6180465 6180670 -153419113 + B3 SINE B2 1 215 -1 2 632 382 348 14 24 chr3 6180744 6180956 -153418827 + Lx8 LINE L1 6636 6845 -628 2 632 29 0 0 0 chr3 6181135 6181164 -153418619 + AT_rich Low_complexity Low_complexity 1 29 0 2 632 997 67 89 0 chr3 6181164 6181299 -153418484 - B1_Mus1 SINE Alu 0 148 2 2 632 387 92 0 0 chr3 6181478 6181543 -153418240 + (CA)n Simple_repeat Simple_repeat 2 66 0 2 632 205 246 0 34 chr3 6181897 6181956 -153417827 + GA-rich Low_complexity Low_complexity 2 58 0 2 632 192 125 0 0 chr3 6181974 6182006 -153417777 + (GGGAGA)n Simple_repeat Simple_repeat 5 36 0 2 632 485 16 16 0 chr3 6183707 6183769 -153416014 + (GA)n Simple_repeat Simple_repeat 2 64 0 2 632 201 314 57 38 chr3 6184131 6184237 -153415546 + L2a LINE L2 3305 3412 -14 2 632 772 303 11 0 chr3 6184655 6184843 -153414940 - B3 SINE B2 -25 191 2 2 632 235 281 323 0 chr3 6185033 6185129 -153414654 - B1F SINE Alu -21 128 2 2 632 536 222 0 7 chr3 6185540 6185685 -153414098 + CT-rich Low_complexity Low_complexity 1 144 0 2 632 254 330 8 8 chr3 6186375 6186494 -153413289 + MLT2B4 LTR ERVL 1 119 -437 2 632 23 68 0 0 chr3 6186704 6186748 -153413035 + AT_rich Low_complexity Low_complexity 1 44 0 2 632 389 350 16 63 chr3 6186763 6187016 -153412767 + RMER15 LTR ERVL 307 547 -28 2 632 370 131 0 0 chr3 6187229 6187290 -153412493 + Lx LINE L1 6583 6643 -11 2 632 1106 186 97 51 chr3 6188379 6188690 -153411093 - RMER17A LTR ERVK 0 751 427 2 632 29755 114 17 10 chr3 6188691 6194794 -153404989 + L1_Mus1 LINE L1 418 6566 -1 2 632 2541 98 0 70 chr3 6194802 6195275 -153404508 - RMER17A LTR ERVK -311 440 1 2 632 331 276 38 0 chr3 6195465 6195570 -153404213 - B1_Mus1 SINE Alu -7 141 33 2 632 298 100 33 0 chr3 6195777 6195837 -153403946 + (CA)n Simple_repeat Simple_repeat 1 62 0 2 632 366 61 0 0 chr3 6195839 6195888 -153403895 + (TG)n Simple_repeat Simple_repeat 2 50 0 2 632 593 298 42 37 chr3 6195923 6196139 -153403644 - MTE2b LTR MaLR -11 368 152 2 632 495 292 217 30 chr3 6196136 6196386 -153403397 - ORR1D1 LTR MaLR -34 340 16 2 632 388 224 0 0 chr3 6196491 6196567 -153403216 - ORR1D1 LTR MaLR -296 78 3 2 632 447 315 71 68 chr3 6196728 6196984 -153402799 + MER58B DNA MER1_type 1 258 -83 2 632 787 209 7 0 chr3 6196984 6197132 -153402651 + B1_Mur4 SINE Alu 1 149 -1 2 632 447 315 71 68 chr3 6197132 6197212 -153402571 + MER58B DNA MER1_type 259 338 -3 2 632 21 0 0 0 chr3 6197753 6197774 -153402009 + AT_rich Low_complexity Low_complexity 1 21 0 2 632 21 95 0 0 chr3 6197968 6198031 -153401752 + AT_rich Low_complexity Low_complexity 1 63 0 2 632 21 71 0 0 chr3 6198910 6198952 -153400831 + AT_rich Low_complexity Low_complexity 1 42 0 2 632 248 385 11 0 chr3 6198957 6199048 -153400735 + B1F SINE Alu 23 114 -35 2 632 225 65 0 0 chr3 6199424 6199455 -153400328 + (CA)n Simple_repeat Simple_repeat 2 32 0 2 632 24 0 0 0 chr3 6199469 6199493 -153400290 + AT_rich Low_complexity Low_complexity 1 24 0 2 632 372 336 128 0 chr3 6199870 6199995 -153399788 + ID_B1 SINE B4 82 222 -2 2 632 582 54 0 0 chr3 6201286 6201360 -153398423 + (GGA)n Simple_repeat Simple_repeat 3 76 0 2 632 207 0 0 0 chr3 6201482 6201505 -153398278 + (TTTG)n Simple_repeat Simple_repeat 1 23 0 2 632 2042 108 177 0 chr3 6201505 6201877 -153397906 - RLTR47_MM LTR ERV1 -85 447 10 2 632 615 316 21 14 chr3 6201937 6202216 -153397567 - RLTR6-int LTR ERV1 -51 7727 7447 2 632 262 307 48 38 chr3 6202755 6202860 -153396923 - RLTR4_MM-int LTR ERV1 -2012 5589 5484 2 632 624 292 21 43 chr3 6203065 6203251 -153396532 - MuRRS4-int LTR ERV1 -1048 4015 3834 2 632 220 293 26 26 chr3 6204002 6204079 -153395704 - ID4 SINE ID -3 80 4 2 632 219 312 92 20 chr3 6204259 6204357 -153395426 + PB1D10 SINE Alu 12 116 -1 2 632 244 390 30 30 chr3 6204391 6204687 -153395096 - L2 LINE L2 -839 2580 2285 2 632 376 400 27 0 chr3 6204705 6204890 -153394893 - B3A SINE B2 -6 192 3 2 632 219 36 0 0 chr3 6205474 6205502 -153394281 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 2 632 224 323 0 50 chr3 6205554 6205694 -153394089 + GA-rich Low_complexity Low_complexity 2 134 0 2 632 4492 84 32 1 chr3 6205860 6206507 -153393276 + L1_Mus3 LINE L1 5968 6634 -4 2 632 2922 84 23 0 chr3 6206857 6207248 -153392535 + MTB LTR MaLR 1 400 0 2 632 261 86 0 0 chr3 6207326 6207361 -153392422 - U2 snRNA snRNA -153 35 1 2 632 279 319 121 40 chr3 6207593 6207717 -153392066 - B3 SINE B2 -32 184 51 2 632 201 121 0 0 chr3 6207799 6207832 -153391951 + (T)n Simple_repeat Simple_repeat 1 33 0 2 632 14498 72 16 3 chr3 6207844 6210534 -153389249 - L1Md_F2 LINE L1 -6 6576 3847 2 632 26547 73 113 5 chr3 6210561 6215923 -153383860 - L1Md_F2 LINE L1 -2 6580 597 2 632 1271 222 101 94 chr3 6216016 6216414 -153383369 - MTC-int LTR MaLR -488 770 276 2 632 26 30 0 0 chr3 6216705 6216738 -153383045 + AT_rich Low_complexity Low_complexity 1 33 0 2 632 494 240 254 12 chr3 6216761 6216934 -153382849 - B3 SINE B2 -1 215 1 2 632 225 305 136 7 chr3 6217157 6217312 -153382471 + Lx7 LINE L1 5729 5903 -1793 2 632 441 0 0 0 chr3 6217324 6217373 -153382410 + (TG)n Simple_repeat Simple_repeat 1 49 0 2 632 648 161 6 80 chr3 6217597 6217759 -153382024 - L1Md_F3 LINE L1 -3 6581 6432 2 632 1815 210 51 22 chr3 6218138 6218547 -153381236 + MTC LTR MaLR 1 421 0 2 632 1142 75 0 0 chr3 6219438 6219585 -153380198 + B1_Mus2 SINE Alu 1 147 0 2 632 315 0 0 0 chr3 6219585 6219620 -153380163 + (A)n Simple_repeat Simple_repeat 1 35 0 2 632 475 224 218 28 chr3 6221012 6221191 -153378592 - Lx7 LINE L1 -2 7694 7482 2 632 22 0 0 0 chr3 6221232 6221254 -153378529 + AT_rich Low_complexity Low_complexity 1 22 0 2 632 308 24 24 0 chr3 6221477 6221518 -153378265 + (TTA)n Simple_repeat Simple_repeat 1 42 0 2 632 411 340 24 12 chr3 6221519 6221683 -153378100 - B3A SINE B2 -24 174 9 2 632 27 0 0 0 chr3 6222204 6222231 -153377552 + AT_rich Low_complexity Low_complexity 1 27 0 2 632 1817 264 103 25 chr3 6222622 6223447 -153376336 - RCHARR1 DNA MER1_type -22 952 64 2 632 22 56 0 0 chr3 6224271 6224307 -153375476 + AT_rich Low_complexity Low_complexity 1 36 0 2 632 587 225 50 8 chr3 6224678 6224799 -153374984 - B1_Mur4 SINE Alu -8 142 17 2 632 468 303 39 19 chr3 6224793 6224948 -153374835 - B3A SINE B2 -36 162 5 2 632 490 303 18 44 chr3 6224962 6225190 -153374593 - ID_B1 SINE B4 -1 223 2 2 632 200 34 0 33 chr3 6225339 6225369 -153374414 + (TAAAA)n Simple_repeat Simple_repeat 1 29 0 2 632 252 0 0 0 chr3 6225551 6225579 -153374204 + (CA)n Simple_repeat Simple_repeat 1 28 0 2 632 6341 91 25 75 chr3 6225689 6226960 -153372823 + L1_Mus2 LINE L1 5360 6566 0 2 632 239 304 59 34 chr3 6227811 6227930 -153371853 + MTEa LTR MaLR 258 379 0 2 632 592 198 144 41 chr3 6229869 6230064 -153369719 - Lx9 LINE L1 0 7644 7430 2 632 217 313 15 0 chr3 6230620 6230687 -153369096 - B2_Mm2 SINE B2 -124 71 4 2 632 294 95 0 0 chr3 6231039 6231081 -153368702 + (TTA)n Simple_repeat Simple_repeat 2 43 0 2 632 599 214 72 48 chr3 6231471 6231638 -153368145 + RMER20B LTR ERVK 1 171 -456 2 632 1624 242 21 95 chr3 6232028 6232512 -153367271 + RMER20B LTR ERVK 178 625 -2 2 632 5043 145 52 4 chr3 6233388 6234302 -153365481 - Lx2 LINE L1 0 6997 6040 2 632 1280 190 103 0 chr3 6234486 6234807 -153364976 + Lx9 LINE L1 7289 7642 -2 2 632 242 32 0 0 chr3 6235088 6235119 -153364664 - 4.5SRNA scRNA scRNA -55 39 9 2 632 3159 29 0 0 chr3 6235120 6235499 -153364284 + L1_Mm LINE L1 4202 4580 -1303 2 632 2839 41 15 0 chr3 6235546 6235887 -153363896 + ORR1A0 LTR MaLR 1 346 0 2 632 13170 57 32 1 chr3 6235887 6237624 -153362159 + ORR1A0-int LTR MaLR 1 1792 0 2 632 2960 38 0 0 chr3 6237624 6237970 -153361813 + ORR1A0 LTR MaLR 1 346 0 2 632 2324 123 31 0 chr3 6239384 6239765 -153360018 - L1_Mur1 LINE L1 -1565 4321 3929 2 632 1214 170 18 0 chr3 6239767 6239991 -153359792 - Lx2 LINE L1 0 6997 6770 2 632 2627 95 3 3 chr3 6239993 6240353 -153359430 - Lx2 LINE L1 -359 6638 6279 2 632 3083 113 10 88 chr3 6240357 6240937 -153358846 - L1_Mur1 LINE L1 -1956 3930 3396 2 632 221 83 0 27 chr3 6241381 6241418 -153358365 + (TC)n Simple_repeat Simple_repeat 2 37 0 2 632 504 59 0 0 chr3 6241430 6241498 -153358285 + (GA)n Simple_repeat Simple_repeat 1 68 0 2 632 289 239 0 14 chr3 6242590 6242662 -153357121 - URR1B DNA MER1_type 0 225 155 3 632 1467 155 30 11 chr3 6242706 6242974 -153356809 - RMER6A LTR ERVK 0 756 484 3 632 26 30 0 0 chr3 6243248 6243281 -153356502 + AT_rich Low_complexity Low_complexity 1 33 0 3 632 5488 126 44 5 chr3 6243368 6245035 -153354748 + L1VL4 LINE L1 1 1556 -2003 3 632 6746 88 39 7 chr3 6245029 6245515 -153354268 + L1VL4 LINE L1 2028 2510 -1049 3 632 576 42 0 0 chr3 6245515 6245586 -153354197 + (GA)n Simple_repeat Simple_repeat 2 72 0 3 632 6746 88 39 7 chr3 6245586 6245826 -153353957 + L1VL4 LINE L1 2511 2773 -786 3 632 279 0 0 0 chr3 6245826 6245857 -153353926 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 3 632 6746 88 39 7 chr3 6245857 6246159 -153353624 + L1VL4 LINE L1 2774 3088 -471 3 632 908 177 15 26 chr3 6246162 6246429 -153353354 + RMER17A LTR ERVK 262 525 -226 3 632 1036 170 41 0 chr3 6246481 6246675 -153353108 + L1_Mur2 LINE L1 4391 4592 -1285 3 632 3585 180 43 18 chr3 6246665 6247343 -153352440 + Lx LINE L1 5935 6629 -25 3 632 249 33 0 0 chr3 6247346 6247376 -153352407 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 3 632 420 20 0 0 chr3 6247445 6247494 -153352289 + (CA)n Simple_repeat Simple_repeat 2 50 0 3 632 279 337 112 0 chr3 6248716 6248814 -153350969 - PB1D9 SINE Alu -4 116 8 3 632 22 35 0 0 chr3 6248877 6248906 -153350877 + AT_rich Low_complexity Low_complexity 1 29 0 3 632 273 108 0 0 chr3 6249652 6249689 -153350094 - Lx3_Mus LINE L1 -1104 5905 5869 3 632 2065 168 36 36 chr3 6249716 6250105 -153349678 + RLTR23 LTR ERV1 41 429 -1 3 632 3693 200 31 19 chr3 6250110 6251106 -153348677 + Lx2B LINE L1 5938 6984 -13 3 632 441 0 0 0 chr3 6251695 6251744 -153348039 + (TAAA)n Simple_repeat Simple_repeat 2 50 0 3 632 26 88 0 0 chr3 6255547 6255615 -153344168 + AT_rich Low_complexity Low_complexity 1 68 0 3 632 865 355 21 3 chr3 6255821 6256104 -153343679 + B4A SINE B4 5 292 0 3 632 531 107 0 0 chr3 6256110 6256194 -153343589 + (CA)n Simple_repeat Simple_repeat 2 85 0 3 632 296 48 31 46 chr3 6256756 6256821 -153342962 + (CAAAA)n Simple_repeat Simple_repeat 2 65 0 3 632 277 312 0 10 chr3 6257120 6257217 -153342566 + (TA)n Simple_repeat Simple_repeat 2 97 0 3 632 758 211 189 16 chr3 6257221 6257538 -153342245 - Lx9 LINE L1 -2 7642 7271 3 632 370 312 31 0 chr3 6259569 6259729 -153340054 + Lx7 LINE L1 6768 6932 -764 3 632 16173 169 17 2 chr3 6259741 6259960 -153339823 + L1_Mus4 LINE L1 2828 3056 -2827 3 632 459 0 0 0 chr3 6259960 6260011 -153339772 + (CA)n Simple_repeat Simple_repeat 2 52 0 3 632 16173 169 17 2 chr3 6260011 6261941 -153337842 + L1_Mus4 LINE L1 3057 5003 -880 3 632 522 0 0 0 chr3 6261941 6261999 -153337784 + (GAAAA)n Simple_repeat Simple_repeat 2 59 0 3 632 16173 139 21 4 chr3 6261999 6263437 -153336346 + L1_Mus4 LINE L1 5004 6474 -162 3 632 2221 150 33 0 chr3 6263436 6263795 -153335988 + L1_Mm LINE L1 5412 5782 -101 3 632 2239 109 188 5 chr3 6263797 6264165 -153335618 + RLTR10C LTR ERVK 1 435 -1 3 632 668 78 0 0 chr3 6264165 6264255 -153335528 + MMERVK10C-int LTR ERVK 3 92 -7489 3 632 250 259 0 18 chr3 6264256 6264311 -153335472 + RLTR27 LTR ERVK 222 275 -34 3 632 4479 107 28 7 chr3 6264311 6264992 -153334791 + MMERVK10C-int LTR ERVK 225 919 -6662 3 632 3385 35 2 0 chr3 6265003 6265398 -153334385 - MTA_Mm LTR MaLR 0 396 1 3 632 8924 41 7 0 chr3 6265398 6266488 -153333295 - MTA_Mm-int LTR MaLR 0 1098 1 3 632 3421 25 5 0 chr3 6266488 6266882 -153332901 - MTA_Mm LTR MaLR 0 396 1 3 632 523 111 0 0 chr3 6266898 6266979 -153332804 + MMERVK10C-int LTR ERVK 872 952 -6629 3 632 1596 183 182 38 chr3 6267071 6267515 -153332268 + RMER16-int LTR ERVK 312 819 -4587 3 632 21314 73 10 28 chr3 6267900 6270765 -153329018 + MMERVK10C-int LTR ERVK 4768 7581 0 3 632 2197 129 160 5 chr3 6270765 6271140 -153328643 + RLTR10C LTR ERVK 1 433 -3 3 632 4980 160 3 20 chr3 6271142 6272029 -153327754 + Lx LINE L1 5781 6652 -2 3 632 242 326 87 0 chr3 6272467 6272559 -153327224 - MLT1A0 LTR MaLR -258 107 8 3 632 189 0 0 0 chr3 6272854 6272875 -153326908 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 3 632 204 372 71 28 chr3 6272880 6273021 -153326762 - L2 LINE L2 -338 3081 2935 3 632 304 269 21 41 chr3 6273555 6273652 -153326131 + ID4 SINE ID 6 100 -52 3 632 26 0 0 0 chr3 6275023 6275049 -153324734 + AT_rich Low_complexity Low_complexity 1 26 0 3 632 6954 122 28 2 chr3 6275634 6276730 -153323053 - L1_Mus2 LINE L1 -782 5101 3977 3 632 4264 147 58 12 chr3 6276720 6276860 -153322923 + L1_Mus2 LINE L1 5086 5223 -660 3 632 360 0 0 0 chr3 6276860 6276900 -153322883 + (TA)n Simple_repeat Simple_repeat 2 41 0 3 632 4264 147 58 12 chr3 6276900 6277104 -153322679 + L1_Mus2 LINE L1 5224 5453 -430 3 632 5496 77 6 4 chr3 6277104 6277835 -153321948 + L1Md_F2 LINE L1 5851 6582 0 3 632 7086 96 11 24 chr3 6277835 6278959 -153320824 + L1_Mus2 LINE L1 5454 6566 0 3 632 2531 222 63 59 chr3 6279896 6280605 -153319178 + Lx2B LINE L1 6289 7000 0 3 632 227 388 0 8 chr3 6280653 6280775 -153319008 + ORR1E LTR MaLR 35 155 -204 3 632 195 42 0 0 chr3 6281649 6281673 -153318110 + (CTTAA)n Simple_repeat Simple_repeat 3 26 0 3 632 2649 192 25 45 chr3 6281907 6282506 -153317277 - L1_Mur1 LINE L1 -755 5131 4545 3 632 1443 169 40 11 chr3 6282506 6282782 -153317001 + Lx2A1 LINE L1 6714 6997 -11 3 632 369 240 31 20 chr3 6283958 6284056 -153315727 + MTE2b LTR MaLR 1 99 -280 3 632 344 306 34 20 chr3 6284187 6284334 -153315449 - L1MEf LINE L1 -4132 2068 1920 3 632 266 375 49 0 chr3 6284409 6284593 -153315190 + MT2A LTR ERVL 264 456 -77 3 632 1497 247 68 2 chr3 6284609 6285080 -153314703 - Lx9 LINE L1 -1 7643 7142 3 632 326 324 7 33 chr3 6285419 6285569 -153314214 + A-rich Low_complexity Low_complexity 4 149 0 3 632 814 281 27 44 chr3 6285606 6285904 -153313879 + Lx9 LINE L1 6553 6845 -799 3 632 1756 115 15 4 chr3 6285921 6286192 -153313591 - Lx3_Mus LINE L1 -760 6249 5976 3 632 1863 152 23 29 chr3 6286192 6286523 -153313260 + Lx3_Mus LINE L1 6662 6991 -18 3 632 213 39 0 0 chr3 6286523 6286549 -153313234 + (TTAA)n Simple_repeat Simple_repeat 3 28 0 3 632 1863 152 23 29 chr3 6286549 6286562 -153313221 + Lx3_Mus LINE L1 6992 7004 -5 3 632 355 233 11 0 chr3 6287034 6287210 -153312573 + (TG)n Simple_repeat Simple_repeat 2 179 0 3 632 325 317 90 17 chr3 6288075 6288309 -153311474 - MER34A1 LTR ERV1 -20 567 317 3 632 420 132 0 0 chr3 6290221 6290304 -153309479 + (TG)n Simple_repeat Simple_repeat 2 84 0 3 632 263 320 79 63 chr3 6290398 6290555 -153309228 - B4A SINE B4 -89 203 37 3 632 2235 183 34 75 chr3 6290555 6291140 -153308643 - RLTR31_Mm LTR ERVK 0 561 1 3 632 263 320 79 63 chr3 6291140 6291172 -153308611 - B4A SINE B4 -256 36 11 3 633 427 262 40 20 chr3 6291576 6291728 -153308055 + LTR48B LTR ERV1 168 322 -322 3 633 304 267 51 17 chr3 6291702 6291820 -153307963 + LTR48B LTR ERV1 621 742 -45 3 633 23831 139 60 36 chr3 6292779 6294877 -153304906 + L1_Mur1 LINE L1 3 2458 -3428 3 633 193 29 29 29 chr3 6294877 6294912 -153304871 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 3 633 23831 105 36 11 chr3 6294912 6297410 -153302373 + L1_Mur1 LINE L1 2459 5043 -843 3 633 5963 53 1 17 chr3 6297411 6299075 -153300708 + L1Md_T LINE L1 1 752 -5972 3 633 38693 48 1 13 chr3 6299058 6312550 -153287233 + L1Md_T LINE L1 1 5586 -297 3 633 8135 58 0 0 chr3 6312550 6313572 -153286211 + L1Md_T LINE L1 5587 6582 0 3 633 10589 3 0 0 chr3 6313572 6314732 -153285051 + L1Md_A LINE L1 4427 5586 -297 3 633 9151 5 0 0 chr3 6314732 6315728 -153284055 + L1Md_A LINE L1 5587 6582 0 3 633 5031 104 44 89 chr3 6315733 6316143 -153283640 + Lx3_Mus LINE L1 5034 5456 -430 3 633 1058 91 7 0 chr3 6316143 6316286 -153283497 + B1_Mm SINE Alu 4 147 0 3 633 9003 103 44 47 chr3 6316286 6317897 -153281886 + Lx3_Mus LINE L1 5457 7009 0 3 633 292 355 25 71 chr3 6318210 6318407 -153281376 - B3A SINE B2 0 198 11 3 633 306 73 0 0 chr3 6319220 6319261 -153280522 + (TG)n Simple_repeat Simple_repeat 2 42 0 3 633 699 200 115 5 chr3 6319360 6319551 -153280232 - Lx9 LINE L1 -69 7575 7364 3 633 916 187 21 21 chr3 6319728 6319914 -153279869 - B2_Mm2 SINE B2 -8 187 2 3 633 1679 79 49 12 chr3 6319965 6320209 -153279574 - L1_Mus1 LINE L1 0 6567 6315 3 633 560 209 54 7 chr3 6321888 6322037 -153277746 - RMER6D LTR ERVK 0 690 535 3 633 551 153 0 0 chr3 6322037 6322122 -153277661 + Lx2 LINE L1 6567 6651 -346 3 633 568 182 63 11 chr3 6322120 6322326 -153277457 + Lx LINE L1 6396 6654 0 3 633 312 251 81 71 chr3 6322341 6322474 -153277309 - RMER6D LTR ERVK -156 534 402 3 633 200 59 29 0 chr3 6322474 6322508 -153277275 + (CAA)n Simple_repeat Simple_repeat 2 36 0 3 633 1426 214 101 24 chr3 6322508 6322967 -153276816 - RMER6D LTR ERVK -255 465 1 3 633 491 282 16 0 chr3 6323630 6323754 -153276029 + B3 SINE B2 27 152 -64 3 633 6075 88 2 6 chr3 6323772 6324235 -153275548 + Lx3_Mus LINE L1 5073 5537 -349 3 633 3964 76 16 4 chr3 6324235 6324748 -153275035 + MURVY-LTR LTR ERV1 1 519 0 3 633 9823 90 14 19 chr3 6324748 6326217 -153273566 + Lx3_Mus LINE L1 5538 6991 -18 3 633 510 49 43 5 chr3 6326217 6326301 -153273482 - ORR1A4 LTR MaLR -6 323 223 3 633 216 318 107 18 chr3 6326510 6326622 -153273161 + B1F SINE Alu 28 149 0 3 633 2124 211 28 68 chr3 6327098 6327769 -153272014 - Lx2B LINE L1 -8 6992 6050 3 633 607 290 121 8 chr3 6328449 6328946 -153270837 + L1MA6 LINE L1 5443 5996 -304 3 633 1353 137 79 88 chr3 6328952 6329257 -153270526 - ORR1A4 LTR MaLR -8 321 20 3 633 313 272 116 24 chr3 6329274 6329465 -153270318 + L1MA6 LINE L1 5997 6189 -102 3 633 234 0 0 0 chr3 6329465 6329491 -153270292 + (TG)n Simple_repeat Simple_repeat 2 27 0 3 633 21 0 0 0 chr3 6329693 6329714 -153270069 + AT_rich Low_complexity Low_complexity 1 21 0 3 633 25 0 0 0 chr3 6329970 6329995 -153269788 + AT_rich Low_complexity Low_complexity 1 25 0 3 633 314 343 7 35 chr3 6330044 6330186 -153269597 - B1_Mur2 SINE Alu -11 138 1 3 633 185 206 43 0 chr3 6330232 6330324 -153269459 + (TA)n Simple_repeat Simple_repeat 2 97 0 3 633 2902 87 26 3 chr3 6330520 6330911 -153268872 + MTB LTR MaLR 1 400 0 3 633 22 0 0 0 chr3 6330912 6330934 -153268849 + AT_rich Low_complexity Low_complexity 1 22 0 3 633 1942 190 105 31 chr3 6332791 6333247 -153266536 + Lx4B LINE L1 6553 7042 -16 3 633 252 0 0 0 chr3 6333247 6333275 -153266508 + (TGAA)n Simple_repeat Simple_repeat 1 28 0 3 633 425 388 64 8 chr3 6333663 6334040 -153265743 - Lx8 LINE L1 -5 7468 7071 3 633 623 290 30 5 chr3 6335999 6336200 -153263583 - B3 SINE B2 -7 209 4 3 633 642 223 14 0 chr3 6336393 6336532 -153263251 + L1MC4 LINE L1 7436 7576 -466 3 633 26 0 0 27 chr3 6336547 6336565 -153263218 + AT_rich Low_complexity Low_complexity 1 18 0 3 633 1164 58 13 0 chr3 6336565 6336721 -153263062 + L1Md_T LINE L1 6424 6581 -1 3 633 26 0 0 27 chr3 6336721 6336739 -153263044 + AT_rich Low_complexity Low_complexity 1 18 0 3 633 369 0 0 0 chr3 6337014 6337055 -153262728 + (TG)n Simple_repeat Simple_repeat 2 42 0 3 633 304 318 22 34 chr3 6337085 6337264 -153262519 + Lx7 LINE L1 7507 7683 -13 4 633 23 54 0 0 chr3 6337270 6337307 -153262476 + AT_rich Low_complexity Low_complexity 1 37 0 4 633 209 150 50 0 chr3 6337413 6337453 -153262330 + (TCTCTG)n Simple_repeat Simple_repeat 3 44 0 4 633 276 111 0 0 chr3 6337453 6337498 -153262285 + (TG)n Simple_repeat Simple_repeat 2 46 0 4 633 1744 251 93 60 chr3 6337667 6338185 -153261598 + RLTR20B1 LTR ERVK 29 563 0 4 633 903 159 71 10 chr3 6338370 6338567 -153261216 + L1_Mur2 LINE L1 2681 2889 -2988 4 633 713 157 0 0 chr3 6338564 6338679 -153261104 + Lx4B LINE L1 5809 5923 -1135 4 633 534 268 46 23 chr3 6338681 6338811 -153260972 + RNERVK23-int LTR ERVK 7070 7202 -204 4 633 286 307 36 68 chr3 6339381 6339573 -153260210 + RLTR45-int LTR ERVK 181 366 -6878 4 633 1388 224 104 30 chr3 6339738 6340232 -153259551 + RLTR45-int LTR ERVK 241 668 -5469 4 633 468 178 93 0 chr3 6340232 6340350 -153259433 + RLTR45-int LTR ERVK 1721 1849 -5557 4 633 345 259 0 59 chr3 6340361 6340469 -153259314 + RLTR45-int LTR ERVK 2454 2653 -3155 4 633 5113 189 62 91 chr3 6340480 6342308 -153257475 + RLTR45-int LTR ERVK 3583 5907 -1337 4 633 875 321 16 9 chr3 6342331 6342652 -153257131 + RNERVK23-int LTR ERVK 7506 7828 -389 4 633 3955 185 27 10 chr3 6342680 6343378 -153256405 + ETnERV2-int LTR ERVK 6493 7202 -204 4 633 2828 234 73 13 chr3 6343769 6344458 -153255325 + Lx5 LINE L1 5919 6648 -402 4 633 720 156 108 9 chr3 6344714 6344928 -153254855 - Lx9 LINE L1 -2 7642 7408 4 633 21 36 0 0 chr3 6345046 6345074 -153254709 + AT_rich Low_complexity Low_complexity 1 28 0 4 633 14768 77 9 6 chr3 6345130 6347348 -153252435 - L1Md_F2 LINE L1 -3 6579 4357 4 633 3561 74 6 4 chr3 6347348 6347824 -153251959 + L1Md_F2 LINE L1 6105 6581 -1 4 633 14768 82 8 9 chr3 6347824 6348336 -153251447 - L1Md_F2 LINE L1 -1527 4356 3844 4 633 8432 71 3 8 chr3 6348336 6349483 -153250300 + L1_Mm LINE L1 2164 3305 -2578 4 633 1193 298 91 51 chr3 6350113 6350820 -153248963 - L1_Mur3 LINE L1 -596 5284 4550 4 633 191 95 48 0 chr3 6350869 6350911 -153248872 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 4 633 519 277 73 40 chr3 6350913 6351252 -153248531 + Lx8 LINE L1 5535 5921 -717 4 633 345 47 0 0 chr3 6351508 6351551 -153248232 + (CA)n Simple_repeat Simple_repeat 1 43 0 4 633 1091 221 164 157 chr3 6351650 6351880 -153247903 - RMER6D LTR ERVK 0 720 466 4 633 3930 121 20 8 chr3 6351880 6351894 -153247889 - Lx3A LINE L1 -1 6980 6967 4 633 243 61 0 0 chr3 6351894 6351927 -153247856 + (TTTA)n Simple_repeat Simple_repeat 1 33 0 4 633 3930 121 20 8 chr3 6351927 6352513 -153247270 - Lx3A LINE L1 -15 6966 6373 4 633 1362 236 209 12 chr3 6352513 6352637 -153247146 - RMER6C LTR ERVK -111 579 445 4 633 207 0 0 0 chr3 6352637 6352660 -153247123 + (AACTG)n Simple_repeat Simple_repeat 5 27 0 4 633 1362 236 209 12 chr3 6352660 6353019 -153246764 - RMER6C LTR ERVK -246 444 2 4 633 417 310 36 81 chr3 6353066 6353287 -153246496 + Lx8 LINE L1 6326 6536 -937 4 633 347 323 36 56 chr3 6353341 6353590 -153246193 + L1M4c LINE L1 1060 1304 -5174 4 633 531 317 118 26 chr3 6353668 6354015 -153245768 + L1M4c LINE L1 1317 1695 -4689 4 633 229 323 66 5 chr3 6354171 6354367 -153245416 + L1M4c LINE L1 2045 2252 -4132 4 633 567 0 0 0 chr3 6354418 6354481 -153245302 + (GAA)n Simple_repeat Simple_repeat 2 64 0 4 633 235 197 66 0 chr3 6354573 6354634 -153245149 + (TATATG)n Simple_repeat Simple_repeat 2 66 0 4 633 310 0 0 0 chr3 6355024 6355060 -153244723 + U2 snRNA snRNA 1 36 -152 4 633 398 266 69 41 chr3 6355238 6355383 -153244400 + B1_Mur3 SINE Alu 1 149 0 4 633 342 311 182 0 chr3 6355431 6355579 -153244204 + Lx8 LINE L1 6825 6999 -474 4 633 15872 128 12 12 chr3 6355611 6359019 -153240764 + L1VL1 LINE L1 492 3899 -1984 4 633 330 26 0 0 chr3 6359019 6359058 -153240725 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 4 633 5391 144 24 3 chr3 6359061 6359990 -153239793 - L1_Mm LINE L1 -949 4934 3987 4 633 6800 94 34 20 chr3 6359985 6360983 -153238800 + L1_Mus2 LINE L1 5584 6565 -1 4 633 21 0 0 0 chr3 6362331 6362352 -153237431 + AT_rich Low_complexity Low_complexity 1 21 0 4 633 21 0 0 0 chr3 6363580 6363601 -153236182 + AT_rich Low_complexity Low_complexity 1 21 0 4 633 22 35 0 0 chr3 6363729 6363758 -153236025 + AT_rich Low_complexity Low_complexity 1 29 0 4 633 27031 95 6 47 chr3 6363758 6370597 -153229186 - L1_Mus3 LINE L1 0 6638 440 4 633 30244 88 28 20 chr3 6370598 6374443 -153225340 - L1_Mm LINE L1 -9 5874 1973 4 633 1103 61 0 7 chr3 6374443 6374592 -153225191 + (TTTTC)n Simple_repeat Simple_repeat 2 149 0 4 633 30244 88 28 20 chr3 6374592 6375235 -153224548 - L1_Mm LINE L1 -3911 1972 1351 4 633 2104 116 13 3 chr3 6375236 6375540 -153224243 + RLTR27 LTR ERVK 1 307 -2 4 633 297 146 38 57 chr3 6375567 6375620 -153224163 + RLTR10-int LTR ERVK 163 267 -7314 4 633 609 250 51 41 chr3 6375659 6375855 -153223928 + RLTR10-int LTR ERVK 655 852 -1135 4 633 208 246 0 62 chr3 6375856 6375921 -153223862 + GA-rich Low_complexity Low_complexity 5 65 0 4 633 416 348 55 30 chr3 6376203 6376568 -153223215 + IAP-d-int LTR ERVK 665 1038 -5504 4 633 2531 303 40 42 chr3 6376680 6378212 -153221571 + MMERVK10C-int LTR ERVK 3950 5478 -2103 4 633 428 314 17 17 chr3 6378699 6378871 -153220912 + MMERVK10C-int LTR ERVK 6898 7069 -512 4 633 1328 196 4 23 chr3 6379005 6379271 -153220512 + MMERVK10C-int LTR ERVK 7321 7581 0 4 633 2155 105 13 7 chr3 6379271 6379577 -153220206 + RLTR27 LTR ERVK 1 308 -1 4 633 4645 141 18 53 chr3 6379589 6380566 -153219217 - L1Md_F LINE L1 -5380 1344 357 4 633 3884 139 0 54 chr3 6380567 6381252 -153218531 + L1_Mm LINE L1 4924 5571 -312 4 633 381 43 0 0 chr3 6382839 6382886 -153216897 + (TC)n Simple_repeat Simple_repeat 1 47 0 4 633 21 0 0 0 chr3 6383212 6383233 -153216550 + AT_rich Low_complexity Low_complexity 1 21 0 4 633 21 0 0 0 chr3 6385237 6385258 -153214525 + AT_rich Low_complexity Low_complexity 1 21 0 4 633 567 297 55 31 chr3 6386049 6386212 -153213571 - B3A SINE B2 -31 167 1 4 633 252 0 0 0 chr3 6386854 6386882 -153212901 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 4 633 342 296 253 0 chr3 6386882 6387044 -153212739 - B3 SINE B2 -13 203 1 4 633 636 158 0 0 chr3 6387500 6387614 -153212169 + (TA)n Simple_repeat Simple_repeat 1 114 0 4 633 22 35 0 0 chr3 6388150 6388179 -153211604 + AT_rich Low_complexity Low_complexity 1 29 0 4 633 203 0 0 36 chr3 6388340 6388368 -153211415 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 4 633 1066 81 0 0 chr3 6388369 6388505 -153211278 - B1_Mus1 SINE Alu -12 136 1 4 633 477 273 58 6 chr3 6388526 6388699 -153211084 - Lx6 LINE L1 -12 7448 7267 4 633 5287 77 6 3 chr3 6388764 6389482 -153210301 + L1Md_F2 LINE L1 5863 6582 0 4 633 1233 170 52 4 chr3 6389486 6389758 -153210025 + L1_Mur3 LINE L1 1243 1527 -4353 4 633 3730 239 151 13 chr3 6389755 6390902 -153208881 + Lx7 LINE L1 5713 7017 -679 4 633 813 251 44 8 chr3 6390898 6391147 -153208636 + Lx7 LINE L1 7439 7696 0 4 633 331 66 32 32 chr3 6391235 6391298 -153208485 + (TCTCTG)n Simple_repeat Simple_repeat 4 66 0 4 633 252 122 0 0 chr3 6391307 6391348 -153208435 + (TG)n Simple_repeat Simple_repeat 2 42 0 4 633 2180 125 189 5 chr3 6391349 6391798 -153207985 - RLTR47_MM LTR ERV1 0 532 1 4 633 310 348 96 0 chr3 6391812 6391947 -153207836 - B3 SINE B2 -21 195 48 4 633 3152 3 8 0 chr3 6391947 6392304 -153207479 + L1Md_T LINE L1 6222 6581 -1 4 633 195 42 0 0 chr3 6392322 6392346 -153207437 + (A)n Simple_repeat Simple_repeat 1 24 0 4 633 212 234 85 0 chr3 6392347 6392394 -153207389 - B3 SINE B2 -160 56 6 4 633 2641 142 34 0 chr3 6392432 6392846 -153206937 - MT2B2 LTR ERVL 0 584 157 4 633 2975 154 12 47 chr3 6392839 6393397 -153206386 - ORR1A2-int LTR MaLR -1403 560 22 4 633 1907 145 22 0 chr3 6393397 6393714 -153206069 - ORR1A2 LTR MaLR -3 324 1 4 633 24 32 0 0 chr3 6393889 6393920 -153205863 + AT_rich Low_complexity Low_complexity 1 31 0 4 633 1494 97 24 0 chr3 6393920 6394127 -153205656 - Lx3_Mus LINE L1 -498 6511 6300 4 633 2596 117 32 5 chr3 6394127 6394538 -153205245 + Lx3_Mus LINE L1 6588 7009 0 4 633 474 65 0 0 chr3 6395652 6395714 -153204069 + (TCTA)n Simple_repeat Simple_repeat 1 62 0 4 633 26 30 0 0 chr3 6395793 6395826 -153203957 + AT_rich Low_complexity Low_complexity 1 33 0 4 633 1431 214 14 0 chr3 6395972 6396248 -153203535 + ORR1C1 LTR MaLR 3 282 -96 4 633 425 331 40 105 chr3 6396256 6396560 -153203223 + MTEa LTR MaLR 96 379 0 4 633 228 35 0 0 chr3 6397228 6397257 -153202526 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 4 633 1940 83 0 4 chr3 6397259 6397525 -153202258 + L1_Mus1 LINE L1 6303 6567 0 4 633 420 239 18 18 chr3 6397613 6397724 -153202059 - Lx9 LINE L1 -483 7161 7051 4 633 372 307 13 13 chr3 6397724 6397876 -153201907 + Lx9 LINE L1 7303 7454 -190 4 633 217 118 39 0 chr3 6398133 6398184 -153201599 + (TA)n Simple_repeat Simple_repeat 1 53 0 4 633 557 64 13 0 chr3 6398189 6398267 -153201516 + (TAGA)n Simple_repeat Simple_repeat 3 81 0 4 633 231 291 38 0 chr3 6400192 6400271 -153199512 + L1M3 LINE L1 5661 5742 -426 4 633 1982 123 149 18 chr3 6400494 6400891 -153198892 - RLTR47_MM LTR ERV1 -83 449 1 4 633 1745 314 43 88 chr3 6400997 6402447 -153197336 - MuRRS4-int LTR ERV1 -133 4930 3546 4 633 605 333 34 33 chr3 6402794 6403185 -153196598 - RLTR6-int LTR ERV1 -3156 4450 4112 4 633 1028 326 93 49 chr3 6403330 6404396 -153195387 - RLTR6-int LTR ERV1 -5265 2513 1401 4 633 768 111 163 0 chr3 6404643 6404796 -153194987 - RLTR47_MM LTR ERV1 0 532 355 4 633 1068 162 6 16 chr3 6405910 6406092 -153193691 - URR1B DNA MER1_type 0 225 46 4 633 527 265 87 34 chr3 6405911 6406118 -153193665 + CYRA11_Mm Unknown Y-chromosome 172 389 -228 4 633 729 284 14 9 chr3 6406965 6407185 -153192598 + MER121 Unknown Unknown 38 258 -154 4 633 296 281 48 95 chr3 6408878 6409004 -153190779 - Lx8 LINE L1 -229 7244 7125 4 633 1024 249 84 18 chr3 6409042 6409316 -153190467 + RMER21B LTR ERV1 274 565 -277 4 633 696 272 60 43 chr3 6409458 6409692 -153190091 - Lx7 LINE L1 -583 7113 6876 4 633 1424 293 77 20 chr3 6409720 6410211 -153189572 - RMER15 LTR ERVL -51 524 6 4 633 969 311 97 71 chr3 6410211 6410315 -153189468 - Lx7 LINE L1 -822 6874 6771 4 633 513 71 0 0 chr3 6410315 6410385 -153189398 + (TCTA)n Simple_repeat Simple_repeat 1 70 0 4 633 969 311 97 71 chr3 6410385 6411022 -153188761 - Lx7 LINE L1 -926 6770 6114 4 633 222 37 0 0 chr3 6411502 6411529 -153188254 + (TC)n Simple_repeat Simple_repeat 2 28 0 4 633 3939 130 35 0 chr3 6411712 6412334 -153187449 + Lx2 LINE L1 6352 6995 -2 4 633 220 139 23 0 chr3 6413027 6413070 -153186713 + (TA)n Simple_repeat Simple_repeat 1 44 0 4 633 563 353 89 11 chr3 6413417 6413686 -153186097 + B4A SINE B4 3 292 0 4 633 3908 176 34 52 chr3 6414046 6414947 -153184836 - L1_Mur2 LINE L1 -1917 3969 3085 5 633 9075 170 30 6 chr3 6414942 6416684 -153183099 + L1_Mur2 LINE L1 3960 5744 -133 5 633 776 103 0 0 chr3 6416680 6416787 -153182996 - L1Md_F2 LINE L1 -446 6136 6030 5 79 37710 45 13 17 chr3 6416793 6422630 -153177153 - L1Md_T LINE L1 0 6585 583 5 634 226 298 69 69 chr3 6422630 6422731 -153177052 - RLTR45 LTR ERVK -378 104 4 5 634 37710 45 13 17 chr3 6422731 6423060 -153176723 - L1Md_T LINE L1 0 582 243 5 634 2729 63 25 0 chr3 6423059 6423421 -153176362 - L1Md_F2 LINE L1 -539 6043 5673 5 634 3100 105 7 0 chr3 6423421 6423859 -153175924 + L1_Mus1 LINE L1 6127 6567 0 5 634 584 49 4 0 chr3 6423869 6423954 -153175829 + Lx LINE L1 5717 5808 -846 5 634 7453 38 1 0 chr3 6423954 6424844 -153174939 - L1Md_T LINE L1 0 6582 5692 5 634 4402 166 48 18 chr3 6424844 6425689 -153174094 + Lx LINE L1 5777 6647 -7 5 634 185 65 0 31 chr3 6425694 6425726 -153174057 + (CAAAA)n Simple_repeat Simple_repeat 4 34 0 5 634 4332 30 17 2 chr3 6425774 6426300 -153173483 - L1Md_T LINE L1 -1 6581 6048 5 634 3159 170 14 14 chr3 6426434 6427017 -153172766 - RMER4B LTR ERVK -2 583 1 5 634 489 76 0 0 chr3 6427776 6427842 -153171941 + (TTCC)n Simple_repeat Simple_repeat 3 68 0 5 634 270 177 48 0 chr3 6427851 6427913 -153171870 - Lx9 LINE L1 -5 7639 7575 5 634 259 195 121 12 chr3 6429108 6429191 -153170592 - Lx9 LINE L1 -51 7593 7502 5 634 25 0 0 0 chr3 6429863 6429888 -153169895 + AT_rich Low_complexity Low_complexity 1 25 0 5 634 331 302 98 14 chr3 6430034 6430249 -153169534 - L1MA9 LINE L1 -288 6024 5792 5 634 462 310 19 0 chr3 6431038 6431196 -153168587 + Lx8 LINE L1 6276 6436 -1037 5 634 720 295 21 81 chr3 6431333 6431668 -153168115 + Lx8 LINE L1 6624 6938 -535 5 634 1375 292 75 33 chr3 6431783 6432265 -153167518 - RMER19C LTR ERVK -1 610 109 5 634 6468 172 73 3 chr3 6432281 6433575 -153166208 + L1_Mm LINE L1 4154 5537 -346 5 634 374 204 21 43 chr3 6433575 6433689 -153166094 - RMER19C LTR ERVK -620 117 1 5 634 576 319 71 68 chr3 6433693 6434019 -153165764 + Lx8 LINE L1 7030 7356 -117 5 634 261 0 0 0 chr3 6434059 6434088 -153165695 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 5 634 546 202 38 14 chr3 6434166 6434403 -153165380 - Lx9 LINE L1 -2 7642 7368 5 634 382 121 15 0 chr3 6434405 6434471 -153165312 + Lx9 LINE L1 6874 6940 -704 5 634 836 248 110 4 chr3 6434492 6434719 -153165064 + Lx9 LINE L1 7140 7390 -254 5 634 32 0 0 0 chr3 6434881 6434913 -153164870 + AT_rich Low_complexity Low_complexity 1 32 0 5 634 346 205 42 17 chr3 6435140 6435259 -153164524 - Lx9 LINE L1 0 7644 7523 5 634 225 0 0 0 chr3 6436063 6436088 -153163695 + (A)n Simple_repeat Simple_repeat 1 25 0 5 634 209 33 33 0 chr3 6436275 6436305 -153163478 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 5 634 1154 62 7 0 chr3 6436385 6436531 -153163252 + B1_Mus2 SINE Alu 1 147 0 5 634 543 151 0 0 chr3 6436531 6436624 -153163159 + A-rich Low_complexity Low_complexity 1 93 0 5 634 203 182 0 0 chr3 6436865 6436898 -153162885 + polypyrimidine Low_complexity Low_complexity 1 33 0 5 634 4801 43 2 0 chr3 6437086 6437669 -153162114 - L1Md_F2 LINE L1 -146 5737 5154 5 634 7084 49 1 1 chr3 6437669 6438552 -153161231 + L1Md_F2 LINE L1 5699 6581 -1 5 634 320 324 111 37 chr3 6438798 6438987 -153160796 - B4 SINE B4 -63 229 27 5 634 534 70 0 0 chr3 6439786 6439857 -153159926 + (CA)n Simple_repeat Simple_repeat 2 72 0 5 634 279 0 0 0 chr3 6439857 6439888 -153159895 + (TA)n Simple_repeat Simple_repeat 2 32 0 5 634 288 0 0 0 chr3 6439888 6439920 -153159863 + (GA)n Simple_repeat Simple_repeat 2 33 0 5 634 333 304 71 0 chr3 6440183 6440295 -153159488 - RSINE1 SINE B4 -41 124 5 5 634 210 103 25 25 chr3 6442396 6442436 -153157347 + T-rich Low_complexity Low_complexity 2 41 0 5 634 1021 103 7 0 chr3 6443466 6443612 -153156171 - B1_Mm SINE Alu 0 147 1 5 634 201 74 0 0 chr3 6444907 6444934 -153154849 + (TG)n Simple_repeat Simple_repeat 2 28 0 5 634 689 79 10 0 chr3 6445039 6445140 -153154643 + (GA)n Simple_repeat Simple_repeat 1 102 0 5 634 498 17 0 0 chr3 6445137 6445196 -153154587 + (GAA)n Simple_repeat Simple_repeat 3 61 0 5 634 596 292 88 30 chr3 6445196 6445479 -153154304 + MLT1C LTR MaLR 180 497 -8 5 634 22 35 0 0 chr3 6446216 6446245 -153153538 + AT_rich Low_complexity Low_complexity 1 29 0 5 634 7191 73 2 0 chr3 6448442 6450280 -153149503 + L1Md_F LINE L1 331 2172 -3711 5 634 3729 126 3 15 chr3 6451675 6452262 -153147521 - L1_Mus4 LINE L1 -8 6628 6049 5 634 461 276 111 12 chr3 6453642 6453814 -153145969 - Lx9 LINE L1 -342 7302 7114 5 634 526 259 17 23 chr3 6453819 6453993 -153145790 + Lx9 LINE L1 7283 7455 -189 5 634 423 0 0 0 chr3 6453996 6454043 -153145740 + (TG)n Simple_repeat Simple_repeat 1 47 0 5 634 541 344 45 11 chr3 6454293 6454652 -153145131 + L1_Mur3 LINE L1 2254 2624 -3256 5 634 990 307 33 31 chr3 6454685 6455227 -153144556 + L1_Mur3 LINE L1 4469 5011 -869 5 634 32 57 0 0 chr3 6455227 6455280 -153144503 + AT_rich Low_complexity Low_complexity 1 53 0 5 634 198 0 0 0 chr3 6455510 6455532 -153144251 + (CAAA)n Simple_repeat Simple_repeat 1 22 0 5 634 37966 32 0 0 chr3 6455869 6462070 -153137713 - L1Md_T LINE L1 0 6585 288 5 634 324 302 23 16 chr3 6462076 6462204 -153137579 - Lx9 LINE L1 -845 6799 6671 5 634 1157 282 98 32 chr3 6462298 6462887 -153136896 + L1_Rod LINE L1 5105 5732 -115 5 634 1068 245 34 67 chr3 6462890 6463218 -153136565 + RMER10A LTR ERVL 17 333 -109 5 634 7590 100 13 38 chr3 6463232 6465303 -153134480 - L1_Mus1 LINE L1 0 6567 4573 5 634 19088 102 88 7 chr3 6465304 6469172 -153130611 - L1Md_F2 LINE L1 0 6582 2366 5 634 474 284 38 13 chr3 6469172 6469329 -153130454 + RMER10A LTR ERVL 282 442 0 5 634 225 246 0 15 chr3 6469348 6469414 -153130369 + L1_Rod LINE L1 5773 5837 -10 5 634 471 82 0 0 chr3 6469676 6469749 -153130034 + (CA)n Simple_repeat Simple_repeat 2 74 0 5 634 24 53 0 0 chr3 6471572 6471610 -153128173 + AT_rich Low_complexity Low_complexity 1 38 0 5 634 41228 5 0 0 chr3 6472312 6478841 -153120942 - L1Md_A LINE L1 0 6582 54 5 634 33 25 0 0 chr3 6478908 6478948 -153120835 + AT_rich Low_complexity Low_complexity 1 40 0 5 634 368 55 0 18 chr3 6479162 6479218 -153120565 + (TA)n Simple_repeat Simple_repeat 1 55 0 5 634 322 327 10 0 chr3 6479408 6479512 -153120271 + Lx6 LINE L1 6350 6454 -1006 5 634 322 269 203 5 chr3 6479522 6479709 -153120074 + Lx7 LINE L1 7181 7404 -292 5 634 1747 228 146 34 chr3 6480091 6480671 -153119112 - RMER19B LTR ERVK 0 902 1 5 634 2281 66 122 11 chr3 6480718 6481069 -153118714 + RLTR10 LTR ERVK 1 390 0 5 634 207 0 0 0 chr3 6481573 6481596 -153118187 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 5 634 197 203 0 17 chr3 6482510 6482531 -153117252 + polypyrimidine Low_complexity Low_complexity 41 61 0 5 634 1064 124 6 0 chr3 6482531 6482709 -153117074 + (TTCC)n Simple_repeat Simple_repeat 1 179 0 5 634 197 203 0 17 chr3 6482709 6482747 -153117036 + CT-rich Low_complexity Low_complexity 4 40 0 5 634 321 256 10 62 chr3 6484230 6484326 -153115457 + RLTR31_Mm LTR ERVK 365 455 -106 5 634 425 125 11 0 chr3 6484417 6484505 -153115278 + (TAGA)n Simple_repeat Simple_repeat 2 90 0 5 634 1151 98 17 0 chr3 6484904 6485078 -153114705 - L1_Mus3 LINE L1 -8 6630 6454 5 634 21 89 0 0 chr3 6485550 6485606 -153114177 + AT_rich Low_complexity Low_complexity 1 56 0 5 634 49 80 0 0 chr3 6485700 6485812 -153113971 + AT_rich Low_complexity Low_complexity 1 112 0 5 634 347 200 77 21 chr3 6485822 6485955 -153113828 - Lx9 LINE L1 -1 7643 7502 5 634 306 0 0 0 chr3 6485955 6485989 -153113794 + (TG)n Simple_repeat Simple_repeat 1 34 0 5 634 252 296 0 30 chr3 6486486 6486587 -153113196 - L1M4c LINE L1 -2159 4223 4126 5 634 258 116 0 0 chr3 6486605 6486648 -153113135 + (CA)n Simple_repeat Simple_repeat 2 44 0 5 634 17422 173 21 111 chr3 6486648 6487376 -153112407 - L1_Mm LINE L1 -221 5662 4914 5 634 3527 105 13 2 chr3 6487376 6487901 -153111882 - L1_Mus4 LINE L1 -4 6632 6102 5 634 17422 173 21 111 chr3 6487901 6491642 -153108141 - L1_Mm LINE L1 -970 4913 1599 5 634 1734 216 85 16 chr3 6491956 6492006 -153107777 + Lx2B LINE L1 6337 6386 -614 5 634 378 0 0 0 chr3 6492006 6492048 -153107735 + (TAAA)n Simple_repeat Simple_repeat 2 43 0 5 634 1734 216 85 16 chr3 6492048 6492434 -153107349 + Lx2B LINE L1 6387 6802 -198 5 634 272 191 16 0 chr3 6492430 6492493 -153107290 + Lx2B LINE L1 6934 6997 -3 5 634 342 256 8 8 chr3 6492531 6492649 -153107134 - L1M4c LINE L1 -3941 2443 2326 5 634 381 75 0 0 chr3 6492696 6492749 -153107034 + (TTTA)n Simple_repeat Simple_repeat 1 53 0 5 634 683 248 8 0 chr3 6492750 6492883 -153106900 - B1_Mus2 SINE Alu -13 134 1 5 634 285 29 0 0 chr3 6492946 6492980 -153106803 + (CA)n Simple_repeat Simple_repeat 2 35 0 5 634 411 21 0 0 chr3 6492981 6493029 -153106754 + (TA)n Simple_repeat Simple_repeat 1 48 0 5 634 284 85 0 41 chr3 6493575 6493624 -153106159 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 5 634 23 54 0 0 chr3 6493678 6493715 -153106068 + AT_rich Low_complexity Low_complexity 1 37 0 5 634 636 143 15 22 chr3 6493899 6494035 -153105748 + CT-rich Low_complexity Low_complexity 3 137 0 5 634 430 283 35 50 chr3 6494126 6494327 -153105456 - Lx6 LINE L1 -9 7451 7254 5 634 265 41 60 20 chr3 6494329 6494379 -153105404 + (CAAAAA)n Simple_repeat Simple_repeat 2 53 0 5 634 205 91 0 102 chr3 6494392 6494441 -153105342 + A-rich Low_complexity Low_complexity 1 44 0 5 634 1210 299 110 31 chr3 6494441 6494679 -153105104 - Lx6 LINE L1 -161 7299 7048 5 634 1468 188 17 75 chr3 6494679 6495024 -153104759 - ORR1A4 LTR MaLR -4 325 1 5 634 1210 293 85 30 chr3 6495024 6495242 -153104541 - Lx6 LINE L1 -413 7047 6819 5 634 1736 291 80 20 chr3 6495248 6495900 -153103883 + Lx6 LINE L1 6032 6722 -738 5 634 548 309 107 36 chr3 6495962 6496522 -153103261 - L1M4c LINE L1 -5117 1267 668 5 634 7067 111 8 24 chr3 6496661 6497910 -153101873 - L1_Mus3 LINE L1 0 6638 5409 5 634 487 205 59 33 chr3 6497940 6498152 -153101631 - L1_Mur3 LINE L1 -3650 2230 2003 5 634 262 283 40 20 chr3 6498192 6498293 -153101490 - MLT1A LTR MaLR -253 121 19 5 634 229 211 28 46 chr3 6498340 6498449 -153101334 + (TATATG)n Simple_repeat Simple_repeat 4 110 0 5 634 4128 102 10 10 chr3 6498567 6499164 -153100619 - L1Md_F2 LINE L1 -3 6579 5983 5 634 6564 63 2 0 chr3 6499164 6500000 -153099783 + L1_Mm LINE L1 5037 5874 -9 5 634 1079 126 0 0 chr3 6500002 6500161 -153099622 + L1Md_F2 LINE L1 5877 6035 -547 1 634 1596 150 36 7 chr3 6500487 6500762 -153099021 - Lx3B LINE L1 -494 6479 6197 2 634 247 323 53 21 chr3 6501497 6501592 -153098191 + B4 SINE B4 155 252 -40 3 634 932 114 0 6 chr3 6501623 6501791 -153097992 + (CA)n Simple_repeat Simple_repeat 1 167 0 4 634 8196 32 1 3 chr3 6502312 6503670 -153096113 - L1Md_F2 LINE L1 -3 6579 5226 5 634 1688 236 32 62 chr3 6503733 6503878 -153095905 + MTC LTR MaLR 1 145 -276 6 634 2107 142 33 119 chr3 6503878 6504366 -153095417 - RLTR41 LTR ERV1 0 446 1 7 634 1688 236 32 62 chr3 6504366 6504654 -153095129 + MTC LTR MaLR 146 421 0 6 634 321 303 54 18 chr3 6504654 6504777 -153095006 + B1_Mur1 SINE Alu 22 148 -1 8 634 437 288 57 87 chr3 6504813 6505113 -153094670 + B4A SINE B4 2 292 0 9 634 7112 73 29 2 chr3 6507078 6508035 -153091748 - L1Md_F2 LINE L1 0 6582 5600 1 634 234 375 31 0 chr3 6508738 6508834 -153090949 + Lx8 LINE L1 7179 7277 -196 1 634 1029 287 98 58 chr3 6508878 6509879 -153089904 + L1_Mur3 LINE L1 3720 4760 -1120 1 634 278 174 29 0 chr3 6509936 6510005 -153089778 + (CATATA)n Simple_repeat Simple_repeat 2 72 0 1 634 5175 80 7 1 chr3 6510248 6510949 -153088834 + L1_Mus1 LINE L1 5863 6567 0 1 634 445 331 12 30 chr3 6511084 6511252 -153088531 + B3 SINE B2 51 215 -1 1 634 25626 148 55 7 chr3 6511323 6517455 -153082328 + L1_Mus4 LINE L1 217 6630 -6 1 634 5140 128 17 23 chr3 6517470 6517726 -153082057 - L1_Mur1 LINE L1 -1008 4878 4643 1 634 383 53 40 13 chr3 6517726 6517802 -153081981 + (TTG)n Simple_repeat Simple_repeat 2 79 0 1 634 5140 128 17 23 chr3 6517802 6518414 -153081369 - L1_Mur1 LINE L1 -1244 4642 4016 1 634 2328 167 19 19 chr3 6518414 6518840 -153080943 + Lx3B LINE L1 6544 6969 -4 1 634 684 227 34 0 chr3 6518938 6519114 -153080669 + L1_Mur2 LINE L1 4443 4624 -1253 2 634 1256 181 0 9 chr3 6519116 6519334 -153080449 + Lx2A1 LINE L1 6409 6624 -384 2 634 594 212 68 30 chr3 6519334 6519548 -153080235 + Lx7 LINE L1 7510 7680 -16 2 634 21 0 0 0 chr3 6519963 6519984 -153079799 + AT_rich Low_complexity Low_complexity 1 21 0 2 634 29 0 0 0 chr3 6520217 6520246 -153079537 + AT_rich Low_complexity Low_complexity 1 29 0 2 634 22 35 0 0 chr3 6521551 6521580 -153078203 + AT_rich Low_complexity Low_complexity 1 29 0 2 634 1664 65 0 0 chr3 6522443 6522657 -153077126 + L1_Mus1 LINE L1 6354 6567 0 2 634 1189 79 0 22 chr3 6522675 6522856 -153076927 + (GAAA)n Simple_repeat Simple_repeat 2 178 0 2 634 644 164 16 0 chr3 6522857 6522985 -153076798 + GA-rich Low_complexity Low_complexity 4 133 0 2 634 1266 90 0 0 chr3 6522986 6523164 -153076619 + (GAAA)n Simple_repeat Simple_repeat 3 180 0 2 634 852 306 72 42 chr3 6523970 6524301 -153075482 + ORR1E LTR MaLR 7 347 -12 3 634 257 292 121 15 chr3 6524437 6524569 -153075214 - B1_Mus2 SINE Alu 0 147 2 3 634 450 0 0 0 chr3 6524622 6524672 -153075111 + (TTTTG)n Simple_repeat Simple_repeat 5 54 0 3 634 29 28 0 0 chr3 6526033 6526069 -153073714 + AT_rich Low_complexity Low_complexity 1 36 0 3 634 6993 99 4 1 chr3 6527114 6528254 -153071529 - L1_Mus1 LINE L1 -1 6566 5423 3 634 1729 108 15 0 chr3 6528254 6528514 -153071269 + L1_Mus1 LINE L1 5153 5416 -467 3 634 4503 139 89 12 chr3 6529147 6529979 -153069804 + RMER17A2 LTR ERVK 1 896 -10 3 634 313 143 46 35 chr3 6530581 6530668 -153069115 + Lx LINE L1 6557 6644 -10 3 634 237 321 0 0 chr3 6530991 6531047 -153068736 + MLT1B LTR MaLR 279 334 -56 3 634 201 147 0 0 chr3 6531845 6531879 -153067904 + (GAAAA)n Simple_repeat Simple_repeat 5 38 0 3 634 461 311 43 0 chr3 6533471 6533680 -153066103 + L1_Mur3 LINE L1 3535 3752 -2391 3 634 986 292 48 36 chr3 6533938 6534550 -153065233 + L1_Mur3 LINE L1 3869 4493 -1650 3 634 28 29 0 0 chr3 6534602 6534637 -153065146 + AT_rich Low_complexity Low_complexity 1 35 0 4 634 1656 134 151 0 chr3 6534639 6534937 -153064846 - L1_Mur1 LINE L1 -171 5715 5373 4 634 339 169 0 30 chr3 6534916 6534983 -153064800 - L1_Mur1 LINE L1 -690 5196 5132 4 634 569 275 60 82 chr3 6534994 6535416 -153064367 + L1_Mur3 LINE L1 5260 5709 -171 3 634 32180 76 7 9 chr3 6535427 6540524 -153059259 + L1Md_F2 LINE L1 499 5586 -297 4 634 7871 57 1 0 chr3 6540525 6541517 -153058266 + L1Md_F2 LINE L1 5588 6580 -2 4 634 250 167 0 0 chr3 6541530 6541578 -153058205 + L1M2 LINE L1 5759 5806 -506 4 634 1298 346 34 31 chr3 6541644 6542493 -153057290 - Lx7 LINE L1 -1094 6602 5751 4 634 889 264 24 20 chr3 6542488 6542735 -153057048 + Lx7 LINE L1 6637 6884 -812 4 634 284 391 39 6 chr3 6542735 6542915 -153056868 + Lx8 LINE L1 6465 6650 -823 4 634 2377 272 97 19 chr3 6543116 6543974 -153055809 + Lx3C LINE L1 6043 6967 -9 4 634 212 77 0 25 chr3 6543974 6544014 -153055769 + (TTAA)n Simple_repeat Simple_repeat 3 41 0 4 634 1518 44 0 0 chr3 6544207 6544389 -153055394 - L1_Mus2 LINE L1 -282 6284 6103 4 634 2330 67 3 9 chr3 6544389 6544707 -153055076 + L1_Mus2 LINE L1 6250 6565 -1 4 634 222 37 0 0 chr3 6545601 6545628 -153054155 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 4 634 696 295 90 146 chr3 6545940 6546721 -153053062 - RCHARR1 DNA MER1_type -51 923 187 5 634 690 47 0 0 chr3 6547930 6548016 -153051767 + (TTTC)n Simple_repeat Simple_repeat 4 89 0 5 634 282 29 0 0 chr3 6548225 6548260 -153051523 + (ATTG)n Simple_repeat Simple_repeat 2 36 0 5 634 240 284 15 0 chr3 6548525 6548592 -153051191 + MT2B2 LTR ERVL 167 234 -350 5 634 625 321 105 50 chr3 6548617 6549132 -153050651 + L2 LINE L2 2445 2987 -432 5 634 5013 109 59 1 chr3 6549311 6550085 -153049698 - Lx LINE L1 -2 6652 5834 5 634 770 78 16 8 chr3 6550708 6550837 -153048946 + L1_Mus3 LINE L1 6502 6631 -7 5 634 339 65 0 0 chr3 6550977 6551023 -153048760 + (TG)n Simple_repeat Simple_repeat 1 46 0 5 634 3007 263 93 39 chr3 6551939 6553207 -153046576 + Lx9 LINE L1 5590 6904 -740 5 634 254 321 18 28 chr3 6553439 6553548 -153046235 - RMER15 LTR ERVL -36 539 432 5 635 1440 249 27 16 chr3 6554304 6554672 -153045111 + ORR1D1 LTR MaLR 3 374 0 6 635 315 71 0 0 chr3 6554838 6554880 -153044903 + (CA)n Simple_repeat Simple_repeat 2 43 0 6 635 27 0 0 0 chr3 6555253 6555280 -153044503 + AT_rich Low_complexity Low_complexity 1 27 0 6 635 255 340 75 28 chr3 6555289 6555395 -153044388 + PB1D10 SINE Alu 7 117 0 6 635 550 241 170 51 chr3 6555696 6555956 -153043827 - RLTR10A LTR ERVK 0 411 104 6 635 2193 295 46 43 chr3 6555975 6558452 -153041331 - IAP-d-int LTR ERVK -202 7042 3270 6 635 372 267 46 40 chr3 6558501 6558653 -153041130 - IAP-d-int LTR ERVK -4149 2393 2241 6 635 385 192 64 55 chr3 6558827 6558937 -153040846 - RLTR10-int LTR ERVK -1559 428 318 6 635 544 270 164 21 chr3 6558953 6559191 -153040592 - RLTR10A LTR ERVK 0 411 140 6 635 510 274 120 6 chr3 6559236 6559394 -153040389 + Lx9 LINE L1 6774 6949 -695 6 635 828 210 252 61 chr3 6559395 6559689 -153040094 + MTB_Mm LTR MaLR 2 351 -45 6 635 355 333 83 22 chr3 6559690 6559871 -153039912 + Lx9 LINE L1 6960 7151 -493 6 635 519 214 0 0 chr3 6560054 6560185 -153039598 + (TG)n Simple_repeat Simple_repeat 2 132 0 6 635 22898 145 25 18 chr3 6560520 6565220 -153034563 - L1Md_F LINE L1 -794 5089 352 6 635 879 309 24 19 chr3 6565238 6565607 -153034176 - L1VL2 LINE L1 -5933 402 32 7 635 614 198 119 0 chr3 6565873 6566005 -153033778 - B1_Mur2 SINE Alu -1 148 3 7 635 291 242 44 132 chr3 6565904 6566018 -153033765 - MT2B LTR ERVL -345 256 153 7 635 23 54 0 0 chr3 6566022 6566059 -153033724 + AT_rich Low_complexity Low_complexity 1 37 0 7 635 589 299 197 3 chr3 6566159 6566468 -153033315 + Lx8 LINE L1 7105 7473 0 7 635 1710 243 94 27 chr3 6566509 6567134 -153032649 + Lx9 LINE L1 6851 7517 -127 7 635 474 156 0 123 chr3 6567127 6567281 -153032502 + Lx9 LINE L1 7477 7611 -33 7 635 2770 48 0 0 chr3 6568019 6568356 -153031427 - L1_Mus1 LINE L1 -603 5964 5628 7 635 2680 58 6 0 chr3 6568356 6568700 -153031083 + L1_Mus1 LINE L1 6222 6567 0 7 635 344 407 34 0 chr3 6570350 6570527 -153029256 + Tigger5 DNA MER2_type 1 183 -2223 7 635 273 287 86 38 chr3 6570582 6570687 -153029096 + Tigger5 DNA MER2_type 2293 2402 -4 7 635 349 277 77 14 chr3 6570765 6570908 -153028875 + LTR80A LTR ERVL 103 254 -329 8 635 2898 166 31 6 chr3 6571149 6571665 -153028118 + Lx2 LINE L1 6468 6996 -1 8 635 378 0 0 0 chr3 6571751 6571793 -153027990 + (TA)n Simple_repeat Simple_repeat 2 43 0 8 635 351 0 0 0 chr3 6571830 6571869 -153027914 + (CA)n Simple_repeat Simple_repeat 2 40 0 8 635 183 80 0 0 chr3 6571869 6571893 -153027890 + (TA)n Simple_repeat Simple_repeat 1 25 0 8 635 4802 137 19 4 chr3 6572521 6573310 -153026473 - L1_Mus3 LINE L1 -24 5859 5059 8 635 4718 95 80 4 chr3 6573313 6574023 -153025760 + L1_Mus3 LINE L1 5869 6632 -6 8 635 236 53 0 26 chr3 6574149 6574188 -153025595 + (TAAAA)n Simple_repeat Simple_repeat 3 40 0 8 635 411 73 0 0 chr3 6575297 6575352 -153024431 + (TC)n Simple_repeat Simple_repeat 2 56 0 8 635 625 157 75 0 chr3 6575354 6575501 -153024282 + L1_Mur3 LINE L1 1614 1771 -4109 8 635 1117 168 12 45 chr3 6575515 6575758 -153024025 - L1_Mus4 LINE L1 -1 6635 6401 8 635 2444 162 2 65 chr3 6575763 6576220 -153023563 + L1_Mm LINE L1 4505 4935 -948 9 635 1587 42 0 10 chr3 6576220 6576414 -153023369 - B2_Mm1a SINE B2 -1 192 1 9 635 2444 162 2 65 chr3 6576414 6576464 -153023319 + L1_Mm LINE L1 4936 4980 -903 9 635 4766 68 5 8 chr3 6576466 6577092 -153022691 + L1Md_F2 LINE L1 5959 6582 0 9 635 310 305 116 0 chr3 6577094 6577189 -153022594 - Tigger5 DNA MER2_type -2300 106 1 9 635 218 227 0 0 chr3 6577259 6577303 -153022480 + A-rich Low_complexity Low_complexity 1 44 0 9 635 212 0 36 0 chr3 6577688 6577716 -153022067 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 9 635 3075 74 40 0 chr3 6577722 6578143 -153021640 - L1_Mus1 LINE L1 -542 6025 5588 9 635 1495 98 30 4 chr3 6578345 6578580 -153021203 + L1_Mus3 LINE L1 6398 6638 0 9 635 219 167 0 0 chr3 6578602 6578638 -153021145 + A-rich Low_complexity Low_complexity 1 36 0 9 635 430 32 63 0 chr3 6579763 6579826 -153019957 + L1_Mus2 LINE L1 6499 6565 -1 9 635 2674 127 53 0 chr3 6579986 6580419 -153019364 - L1_Mur2 LINE L1 -1350 4527 4072 1 635 4845 197 72 13 chr3 6580420 6581554 -153018229 + Lx2B LINE L1 5800 7000 0 1 635 1655 270 43 10 chr3 6581907 6582400 -153017383 + Lx7 LINE L1 6855 7363 -333 1 635 883 135 0 13 chr3 6582407 6582565 -153017218 + (TTCC)n Simple_repeat Simple_repeat 3 158 0 1 635 32 75 0 0 chr3 6582871 6582938 -153016845 + AT_rich Low_complexity Low_complexity 1 67 0 1 635 185 262 121 77 chr3 6583165 6583256 -153016527 - L3 LINE CR1 -3491 998 904 1 635 622 295 95 57 chr3 6583768 6584346 -153015437 + L1MB8 LINE L1 5370 5969 -209 1 635 588 346 92 15 chr3 6584442 6584805 -153014978 + MER31A LTR ERV1 1 390 -76 1 635 2408 167 170 33 chr3 6585298 6585595 -153014188 - RMER6C LTR ERVK 0 690 374 1 635 243 0 0 0 chr3 6585595 6585622 -153014161 + (TC)n Simple_repeat Simple_repeat 1 27 0 1 635 423 0 0 0 chr3 6585622 6585668 -153014115 + (CA)n Simple_repeat Simple_repeat 1 47 0 1 635 2408 167 170 33 chr3 6585668 6585976 -153013807 - RMER6C LTR ERVK -317 373 2 1 635 256 196 0 18 chr3 6586266 6586323 -153013460 + (TATG)n Simple_repeat Simple_repeat 3 58 0 1 635 414 0 0 0 chr3 6586375 6586421 -153013362 + (TG)n Simple_repeat Simple_repeat 2 47 0 1 635 315 0 0 0 chr3 6586421 6586455 -153013328 + (TA)n Simple_repeat Simple_repeat 2 36 0 1 635 654 275 99 5 chr3 6586476 6586688 -153013095 + Lx8 LINE L1 6789 7020 -453 1 635 651 112 0 0 chr3 6586688 6586786 -153012997 + (TA)n Simple_repeat Simple_repeat 2 99 0 1 635 904 128 57 0 chr3 6587291 6587432 -153012351 + ORR1A3 LTR MaLR 178 326 0 1 635 8009 164 55 76 chr3 6587433 6589191 -153010592 + ORR1A3-int LTR MaLR 2 1722 -241 1 635 950 239 29 0 chr3 6589192 6589401 -153010382 - Lx6 LINE L1 -856 6604 6390 1 635 22 35 0 0 chr3 6589735 6589764 -153010019 + AT_rich Low_complexity Low_complexity 1 29 0 1 635 21 36 0 0 chr3 6589801 6589829 -153009954 + AT_rich Low_complexity Low_complexity 1 28 0 1 635 279 242 49 2 chr3 6592207 6592293 -153007490 + MTEa LTR MaLR 1 91 -288 1 635 262 284 0 120 chr3 6592744 6592844 -153006939 - RSINE1 SINE B4 0 165 78 1 635 216 395 61 9 chr3 6592921 6593036 -153006747 - B4A SINE B4 -169 123 3 1 635 349 248 111 8 chr3 6593041 6593167 -153006616 - ERVL-B4-int LTR ERVL -4613 1101 963 1 635 186 43 0 0 chr3 6593764 6593787 -153005996 + (T)n Simple_repeat Simple_repeat 1 23 0 1 635 1187 55 0 0 chr3 6593787 6593933 -153005850 - B1_Mm SINE Alu 0 147 2 1 635 282 56 0 0 chr3 6594730 6594766 -153005017 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 1 635 3119 220 47 8 chr3 6594777 6595419 -153004364 - Lx5 LINE L1 -35 7015 6349 1 635 222 242 0 0 chr3 6596077 6596143 -153003640 + (TG)n Simple_repeat Simple_repeat 1 66 0 1 635 560 218 6 0 chr3 6596520 6596699 -153003084 + (TG)n Simple_repeat Simple_repeat 1 180 0 1 635 351 179 0 0 chr3 6596891 6596958 -153002825 + GA-rich Low_complexity Low_complexity 3 69 0 1 635 742 314 95 17 chr3 6597486 6597845 -153001938 + RMER5 LTR ERV1 112 498 -36 1 635 1153 133 5 50 chr3 6598445 6598622 -153001161 - Lx2 LINE L1 -11 6986 6818 1 635 3561 27 48 51 chr3 6598622 6599096 -153000687 - IAPLTR2_Mm LTR ERVK 0 475 3 1 635 1153 133 5 50 chr3 6599096 6599140 -153000643 - Lx2 LINE L1 -180 6817 6775 1 635 4892 181 34 34 chr3 6599138 6600571 -152999212 - Lx2 LINE L1 -352 6645 5225 1 635 7150 92 6 11 chr3 6600591 6601806 -152997977 - L1_Mus2 LINE L1 0 6566 5357 1 635 41196 6 0 1 chr3 6601835 6608618 -152991165 - L1Md_A LINE L1 -1 6581 1 1 635 1294 158 34 15 chr3 6608619 6608883 -152990900 - L1_Mus2 LINE L1 -516 5367 5099 1 635 4925 188 13 11 chr3 6608886 6609815 -152989968 - Lx2 LINE L1 -1648 4229 3300 1 635 294 29 0 0 chr3 6609815 6609850 -152989933 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1 635 4925 188 13 11 chr3 6609850 6609964 -152989819 - Lx2 LINE L1 -2578 3299 3185 1 635 1102 314 50 35 chr3 6609996 6610478 -152989305 + Lx8 LINE L1 6207 6695 -778 1 635 1622 70 0 0 chr3 6611592 6611805 -152987978 + L1_Mus1 LINE L1 6355 6567 0 1 635 26 50 0 0 chr3 6611823 6611863 -152987920 + AT_rich Low_complexity Low_complexity 1 40 0 1 635 341 270 247 25 chr3 6612812 6613051 -152986732 - L1MC LINE L1 -2989 3157 2866 1 635 28 61 0 0 chr3 6613292 6613341 -152986442 + AT_rich Low_complexity Low_complexity 1 49 0 1 635 6150 85 20 2 chr3 6613462 6614310 -152985473 - L1_Mus3 LINE L1 -7 6631 5769 1 635 4677 104 15 8 chr3 6614534 6615248 -152984535 - Lx3A LINE L1 -3 6978 6260 1 635 257 243 44 26 chr3 6615270 6615384 -152984399 - L1MC LINE L1 -3694 2452 2337 1 635 207 0 0 0 chr3 6615972 6615995 -152983788 + (A)n Simple_repeat Simple_repeat 1 23 0 1 635 429 20 0 0 chr3 6616597 6616647 -152983136 + (TA)n Simple_repeat Simple_repeat 2 51 0 1 635 580 266 114 38 chr3 6616814 6616998 -152982785 - B3 SINE B2 -1 215 18 1 635 433 311 44 36 chr3 6618671 6618808 -152980975 - RSINE1 SINE B4 -25 140 3 1 635 208 244 23 23 chr3 6618937 6619025 -152980758 + (TATAA)n Simple_repeat Simple_repeat 2 89 0 1 635 22 0 0 0 chr3 6619284 6619306 -152980477 + AT_rich Low_complexity Low_complexity 1 22 0 1 635 181 284 79 59 chr3 6619436 6619537 -152980246 - MIRb SINE MIR -113 155 53 1 635 376 308 58 27 chr3 6620951 6621281 -152978502 - L1MCa LINE L1 -4153 2355 2016 1 635 40776 10 2 0 chr3 6621356 6627459 -152972324 - L1Md_A LINE L1 0 6582 469 1 635 566 384 101 0 chr3 6628391 6628719 -152971064 - RMER15 LTR ERVL -17 558 198 1 635 443 355 49 81 chr3 6629013 6629421 -152970362 - L1MCa LINE L1 -5802 706 312 1 635 230 0 33 0 chr3 6629506 6629536 -152970247 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1 635 264 287 0 21 chr3 6629571 6629667 -152970116 - L1MCa LINE L1 -6365 143 50 1 635 2246 293 79 80 chr3 6629846 6631011 -152968772 + Lx5 LINE L1 5887 7050 0 1 635 2880 75 5 3 chr3 6631865 6632251 -152967532 + L1_Mus2 LINE L1 6180 6566 0 1 635 21 0 0 0 chr3 6632720 6632741 -152967042 + AT_rich Low_complexity Low_complexity 1 21 0 1 635 516 16 0 0 chr3 6633377 6633438 -152966345 + (CA)n Simple_repeat Simple_repeat 2 62 0 1 635 241 191 0 113 chr3 6633443 6633496 -152966287 - ID2 SINE ID -13 70 24 1 635 483 201 22 0 chr3 6633496 6633635 -152966148 + (TCTA)n Simple_repeat Simple_repeat 4 145 0 1 635 378 0 0 0 chr3 6633740 6633782 -152966001 + (TA)n Simple_repeat Simple_repeat 2 43 0 1 635 297 68 0 0 chr3 6633782 6633825 -152965958 + (TG)n Simple_repeat Simple_repeat 1 44 0 1 635 1140 84 0 0 chr3 6635323 6635466 -152964317 - B1_Mus1 SINE Alu -3 145 3 1 635 1973 61 7 37 chr3 6635671 6635944 -152963839 + L1Md_F2 LINE L1 6306 6570 -12 1 635 5603 143 2 16 chr3 6637577 6637940 -152961843 + L1_Mus4 LINE L1 5292 5649 -234 1 635 3021 61 10 0 chr3 6637940 6638332 -152961451 - MTA_Mm LTR MaLR 0 396 1 1 635 5603 113 1 37 chr3 6638332 6638832 -152960951 + L1_Mus4 LINE L1 5650 6142 -494 1 635 1175 71 0 0 chr3 6638832 6638986 -152960797 + L1_Mus2 LINE L1 6413 6566 0 1 635 5603 113 1 37 chr3 6638986 6639278 -152960505 + L1_Mus4 LINE L1 6143 6418 -218 1 635 1180 372 91 55 chr3 6639279 6640413 -152959370 + ORR1E-int LTR MaLR 355 1529 -51 1 635 460 357 14 0 chr3 6640413 6640556 -152959227 + ORR1E LTR MaLR 3 147 -212 1 635 255 299 31 0 chr3 6640763 6640860 -152958923 + L1M2 LINE L1 5678 5777 -514 1 635 247 25 50 0 chr3 6640881 6640921 -152958862 + (TA)n Simple_repeat Simple_repeat 1 42 0 1 635 7340 115 11 15 chr3 6641017 6641953 -152957830 + L1_Mus3 LINE L1 5034 5961 -677 1 635 1067 72 7 0 chr3 6641953 6642092 -152957691 + B1_Mus1 SINE Alu 1 140 -8 1 635 194 0 39 0 chr3 6642092 6642118 -152957665 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 635 7340 91 14 25 chr3 6642118 6642791 -152956992 + L1_Mus3 LINE L1 5962 6637 -1 1 635 555 16 0 0 chr3 6642945 6643009 -152956774 + (CA)n Simple_repeat Simple_repeat 2 65 0 1 635 407 349 88 44 chr3 6643842 6644202 -152955581 + ORR1D2 LTR MaLR 1 368 -2 1 635 410 350 24 30 chr3 6644204 6644369 -152955414 + ORR1D2-int LTR MaLR 1 164 -1416 1 635 318 379 44 22 chr3 6644384 6644565 -152955218 + B4 SINE B4 53 237 -55 1 635 525 310 76 11 chr3 6645005 6645269 -152954514 - L1MC3 LINE L1 -206 7579 7299 1 635 430 67 0 26 chr3 6645645 6645722 -152954061 + (TTTTTG)n Simple_repeat Simple_repeat 3 77 0 1 635 1074 112 15 101 chr3 6645722 6645920 -152953863 + RMER17A LTR ERVK 571 751 0 1 635 772 104 0 0 chr3 6645920 6646025 -152953758 - B1_Mus1 SINE Alu -33 115 11 1 635 270 81 0 0 chr3 6646028 6646065 -152953718 + (T)n Simple_repeat Simple_repeat 1 37 0 1 635 473 195 0 0 chr3 6646824 6646901 -152952882 - B3 SINE B2 -139 77 1 1 635 274 271 14 14 chr3 6647671 6647742 -152952041 + ID4_ SINE ID 11 81 -2 1 635 748 346 8 8 chr3 6648388 6648624 -152951159 - MTEa LTR MaLR -143 236 1 1 635 651 88 0 0 chr3 6648983 6649074 -152950709 + (TC)n Simple_repeat Simple_repeat 1 91 0 1 635 4215 255 55 52 chr3 6649100 6651192 -152948591 - Lx5 LINE L1 -168 6882 4793 1 635 1538 184 124 8 chr3 6651188 6651566 -152948217 + L1_Mur3 LINE L1 4184 4605 -1275 1 635 2464 44 0 42 chr3 6651873 6652205 -152947578 + L1Md_F3 LINE L1 6267 6584 0 1 635 316 138 15 15 chr3 6653788 6653854 -152945929 + (TA)n Simple_repeat Simple_repeat 1 66 0 1 635 314 312 0 30 chr3 6653856 6653955 -152945828 + L1M4b LINE L1 1839 1934 -5400 1 635 507 336 137 18 chr3 6654221 6654557 -152945226 - Lx8 LINE L1 -898 6575 6200 1 635 4243 96 13 16 chr3 6654616 6655243 -152944540 - L1Md_F2 LINE L1 0 6582 5958 1 635 33094 88 3 3 chr3 6655262 6660637 -152939146 - L1Md_F LINE L1 0 5883 509 1 635 796 106 0 0 chr3 6660636 6660759 -152939024 - L1_Mm LINE L1 -2958 2925 2803 1 635 35018 74 5 3 chr3 6660751 6666942 -152932841 - L1Md_F3 LINE L1 0 6584 446 1 635 10692 95 11 13 chr3 6666941 6667018 -152932765 - L1Md_F LINE L1 -3059 2824 2751 1 635 2813 23 2 204 chr3 6667018 6667507 -152932276 - RLTR10 LTR ERVK 0 390 1 1 635 10692 110 30 9 chr3 6667507 6669849 -152929934 - L1Md_F LINE L1 -3133 2750 355 1 635 22 80 0 0 chr3 6669929 6669979 -152929804 + AT_rich Low_complexity Low_complexity 1 50 0 1 635 1085 109 0 0 chr3 6670112 6670259 -152929524 + B1_Mm SINE Alu 1 147 0 1 635 29 0 0 0 chr3 6670259 6670288 -152929495 + AT_rich Low_complexity Low_complexity 1 29 0 2 635 260 303 109 84 chr3 6670367 6670569 -152929214 - L1_Rod LINE L1 -130 5717 5511 2 635 444 290 191 33 chr3 6670631 6670871 -152928912 - L1_Rod LINE L1 -472 5408 5122 2 635 763 196 179 5 chr3 6670871 6671061 -152928722 - URR1A DNA MER1_type 0 226 4 2 635 444 274 210 45 chr3 6671061 6671432 -152928351 - L1_Rod LINE L1 -726 5121 4678 2 635 454 279 26 13 chr3 6671475 6671631 -152928152 + Lx8 LINE L1 5756 5913 -1560 2 635 732 181 12 6 chr3 6671747 6671914 -152927869 + GA-rich Low_complexity Low_complexity 1 168 0 2 635 294 355 118 5 chr3 6672044 6672231 -152927552 + Lx8 LINE L1 6197 6404 -1069 2 635 367 273 34 0 chr3 6672382 6672470 -152927313 + B1_Mus2 SINE Alu 6 96 -51 2 635 366 42 0 0 chr3 6672470 6672518 -152927265 + (GA)n Simple_repeat Simple_repeat 2 49 0 2 635 27 29 0 0 chr3 6672614 6672648 -152927135 + AT_rich Low_complexity Low_complexity 1 34 0 2 635 247 362 46 37 chr3 6672661 6672770 -152927013 - PB1D9 SINE Alu -10 110 1 2 635 543 350 25 55 chr3 6673019 6673255 -152926528 + B4A SINE B4 5 233 -59 2 635 387 49 0 47 chr3 6673270 6673334 -152926449 + L1_Mus1 LINE L1 6507 6567 0 2 635 685 294 32 21 chr3 6673358 6673546 -152926237 + B3 SINE B2 27 216 0 2 635 269 291 50 12 chr3 6673546 6673626 -152926157 + B4A SINE B4 210 292 0 2 635 279 272 0 12 chr3 6673657 6673739 -152926044 + (CA)n Simple_repeat Simple_repeat 2 82 0 2 635 284 208 0 0 chr3 6674274 6674346 -152925437 + (TG)n Simple_repeat Simple_repeat 2 73 0 2 635 644 139 35 11 chr3 6674913 6675087 -152924696 + (TAGA)n Simple_repeat Simple_repeat 1 178 0 2 635 546 16 0 0 chr3 6676317 6676380 -152923403 + (GA)n Simple_repeat Simple_repeat 2 64 0 2 635 8916 12 0 0 chr3 6678972 6680587 -152919196 - L1Md_T LINE L1 0 6582 4968 2 635 189 262 0 0 chr3 6681271 6681332 -152918451 + CT-rich Low_complexity Low_complexity 4 64 0 2 635 184 59 59 0 chr3 6683201 6683235 -152916548 + (TA)n Simple_repeat Simple_repeat 2 37 0 2 636 992 56 0 0 chr3 6685633 6685759 -152914024 - L1Md_F2 LINE L1 -300 6282 6157 2 636 22 0 0 0 chr3 6685778 6685800 -152913983 + AT_rich Low_complexity Low_complexity 1 22 0 2 636 287 356 46 100 chr3 6685801 6686041 -152913742 + MLT1I LTR MaLR 63 289 -122 2 636 25 31 0 0 chr3 6686353 6686385 -152913398 + AT_rich Low_complexity Low_complexity 1 32 0 2 636 1115 214 13 26 chr3 6686413 6686639 -152913144 + RMER20B LTR ERVK 1 223 -404 2 636 1926 117 73 37 chr3 6686708 6687063 -152912720 - RLTR9A LTR ERVK 0 368 1 2 636 264 188 24 24 chr3 6687081 6687163 -152912620 - Lx8 LINE L1 -1265 6208 6127 2 636 310 277 0 0 chr3 6687192 6687257 -152912526 + Lx8 LINE L1 6719 6783 -690 2 636 315 0 0 0 chr3 6687259 6687294 -152912489 + (TG)n Simple_repeat Simple_repeat 2 36 0 2 636 511 319 145 20 chr3 6687365 6687811 -152911972 + Lx8 LINE L1 6862 7386 -87 2 636 742 225 32 27 chr3 6688104 6688291 -152911492 - URR1A DNA MER1_type -2 224 37 2 636 792 231 243 105 chr3 6688480 6688945 -152910838 - MT2A LTR ERVL -2 531 3 2 636 1429 219 89 3 chr3 6689058 6689406 -152910377 - RLTR30 LTR ERV1 -1 378 1 2 636 929 248 166 133 chr3 6689429 6689826 -152909957 - MT2A LTR ERVL 0 601 86 2 636 1094 76 0 7 chr3 6689826 6689961 -152909822 + B1_Mm SINE Alu 1 135 -12 2 636 233 29 0 29 chr3 6689961 6689996 -152909787 + (CAAAA)n Simple_repeat Simple_repeat 1 34 0 2 636 929 243 177 141 chr3 6690006 6690094 -152909689 - MT2A LTR ERVL -448 85 1 2 636 5198 229 63 76 chr3 6690094 6690521 -152909262 - MERVL_2A-int LTR ERVL -34 5727 5340 2 636 216 67 0 0 chr3 6690521 6690551 -152909232 + (TTG)n Simple_repeat Simple_repeat 2 31 0 2 636 1100 79 0 0 chr3 6690551 6690690 -152909093 - B1_Mus2 SINE Alu -8 139 1 2 636 5198 229 63 76 chr3 6690690 6691742 -152908041 - MERVL_2A-int LTR ERVL -422 5339 4268 2 636 505 212 132 12 chr3 6691908 6692075 -152907708 + Lx9 LINE L1 7434 7620 -24 2 636 438 385 51 28 chr3 6692510 6692938 -152906845 - MLT1F1-int LTR MaLR -215 1274 837 2 636 686 212 20 0 chr3 6693182 6693328 -152906455 + B1_Mur3 SINE Alu 1 149 0 2 636 507 234 0 0 chr3 6693337 6693461 -152906322 + GA-rich Low_complexity Low_complexity 6 129 0 2 636 238 375 56 60 chr3 6693931 6694215 -152905568 - MLT1F1-int LTR MaLR -1199 290 8 2 636 244 350 86 32 chr3 6694218 6694404 -152905379 - MLT1F1 LTR MaLR -12 557 362 2 636 694 309 231 23 chr3 6694732 6695213 -152904570 + Lx7 LINE L1 6719 7299 -397 2 636 1240 338 112 5 chr3 6695383 6696029 -152903754 + Lx8 LINE L1 6385 7099 -374 2 636 35768 55 25 17 chr3 6696228 6701670 -152898113 + L1Md_A LINE L1 98 5586 -297 2 636 8510 28 0 1 chr3 6701670 6702667 -152897116 + L1Md_A LINE L1 5587 6582 0 2 636 751 125 0 18 chr3 6702689 6702783 -152897000 + L1_Mm LINE L1 5493 5586 -297 2 636 7546 72 1 9 chr3 6702783 6703787 -152895996 + L1Md_F2 LINE L1 5587 6582 0 2 636 751 125 0 18 chr3 6703787 6703806 -152895977 + L1_Mm LINE L1 5587 5604 -279 2 636 21 104 0 0 chr3 6704133 6704210 -152895573 + AT_rich Low_complexity Low_complexity 1 77 0 2 636 3205 229 60 7 chr3 6704349 6705096 -152894687 - Lx2B LINE L1 -112 6888 6102 2 636 325 211 0 0 chr3 6705276 6705333 -152894450 - Lx9 LINE L1 -230 7414 7358 2 636 2068 104 268 11 chr3 6705325 6705702 -152894081 + L1_Mur1 LINE L1 4674 5147 -739 2 636 4577 149 34 13 chr3 6705686 6706542 -152893241 - L1_Mur1 LINE L1 -1580 4306 3433 2 636 1793 274 29 0 chr3 6706577 6707029 -152892754 - Lx5 LINE L1 -11 7039 6575 2 636 9812 56 10 1 chr3 6707126 6708495 -152891288 + L1Md_F2 LINE L1 4602 5977 -605 2 636 8347 122 22 11 chr3 6708495 6709789 -152889994 + Lx3B LINE L1 5663 6970 -3 2 636 395 92 0 15 chr3 6709792 6709858 -152889925 + (TAA)n Simple_repeat Simple_repeat 3 67 0 2 636 9582 19 0 0 chr3 6709958 6711756 -152888027 - L1Md_A LINE L1 -1 6581 4784 2 636 11675 166 48 62 chr3 6712057 6715397 -152884386 + Lx5 LINE L1 458 3747 -2130 2 636 5045 217 119 12 chr3 6715535 6717085 -152882698 + Lx5 LINE L1 5346 7042 -8 2 636 34 42 0 0 chr3 6717864 6717912 -152881871 + AT_rich Low_complexity Low_complexity 1 48 0 2 636 636 316 93 0 chr3 6718039 6718276 -152881507 - MER2 DNA MER2_type -1 344 86 2 636 224 188 16 0 chr3 6718293 6718357 -152881426 + (TG)n Simple_repeat Simple_repeat 2 66 0 2 636 1451 135 25 0 chr3 6719073 6719318 -152880465 + Lx3B LINE L1 6718 6968 -5 2 636 266 0 0 29 chr3 6719327 6719362 -152880421 + (TAA)n Simple_repeat Simple_repeat 2 35 0 2 636 189 0 0 0 chr3 6719362 6719383 -152880400 + (TTA)n Simple_repeat Simple_repeat 1 21 0 2 636 333 0 0 0 chr3 6719702 6719739 -152880044 + (TC)n Simple_repeat Simple_repeat 2 38 0 2 636 198 91 0 0 chr3 6719739 6719771 -152880012 + (TG)n Simple_repeat Simple_repeat 2 34 0 2 636 183 80 0 0 chr3 6720523 6720548 -152879235 + (TTG)n Simple_repeat Simple_repeat 2 26 0 2 636 591 181 0 0 chr3 6721989 6722105 -152877678 + (TG)n Simple_repeat Simple_repeat 1 116 0 2 636 192 77 0 0 chr3 6722618 6722644 -152877139 + (CA)n Simple_repeat Simple_repeat 2 27 0 2 636 354 45 0 0 chr3 6722955 6722999 -152876784 + (TG)n Simple_repeat Simple_repeat 1 44 0 2 636 473 310 253 54 chr3 6723887 6724498 -152875285 - Charlie13a DNA Charlie -667 847 116 2 636 606 304 59 15 chr3 6724763 6724967 -152874816 - B3 SINE B2 -3 213 1 2 636 2424 124 29 3 chr3 6724999 6725379 -152874404 + Lx2 LINE L1 6256 6645 -352 2 636 1442 102 9 0 chr3 6725381 6725596 -152874187 + Lx2 LINE L1 6779 6995 -2 2 636 253 47 23 23 chr3 6726172 6726216 -152873567 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 2 636 3083 162 100 26 chr3 6727224 6727923 -152871860 + RMER17A LTR ERVK 1 751 0 2 636 750 260 7 0 chr3 6727983 6728137 -152871646 + B3 SINE B2 1 155 -61 2 636 405 0 0 0 chr3 6728160 6728205 -152871578 + (TG)n Simple_repeat Simple_repeat 2 46 0 2 636 480 278 25 74 chr3 6729343 6729506 -152870277 - B4A SINE B4 -22 270 116 2 636 1265 73 11 0 chr3 6729726 6729903 -152869880 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 2 636 339 85 0 0 chr3 6729903 6729950 -152869833 + (GGAA)n Simple_repeat Simple_repeat 3 49 0 2 636 418 241 99 41 chr3 6730220 6730341 -152869442 + RSINE1 SINE B4 2 129 -36 2 636 294 29 0 0 chr3 6730398 6730433 -152869350 + (CA)n Simple_repeat Simple_repeat 2 36 0 2 636 444 62 0 0 chr3 6730433 6730497 -152869286 + (GA)n Simple_repeat Simple_repeat 1 64 0 2 636 945 27 0 0 chr3 6736738 6736850 -152862933 + (TA)n Simple_repeat Simple_repeat 2 113 0 2 636 23 54 0 0 chr3 6737014 6737051 -152862732 + AT_rich Low_complexity Low_complexity 1 37 0 2 636 267 305 63 56 chr3 6737826 6737961 -152861822 - MTE-int LTR MaLR -47 1533 1361 2 636 22 0 0 0 chr3 6737961 6737983 -152861800 + AT_rich Low_complexity Low_complexity 1 22 0 2 636 1961 178 52 7 chr3 6737993 6738396 -152861387 + L1_Mur1 LINE L1 4430 4850 -1036 2 636 37833 14 0 7 chr3 6738397 6743795 -152855988 + L1Md_A LINE L1 231 5586 -297 2 636 8807 12 1 0 chr3 6743795 6744790 -152854993 + L1Md_A LINE L1 5587 6582 0 2 636 767 226 7 2 chr3 6744790 6744992 -152854791 + L1_Mur1 LINE L1 4835 5042 -844 2 636 1959 155 7 3 chr3 6744992 6745302 -152854481 + RLTR10E LTR ERVK 1 311 0 2 636 761 78 10 0 chr3 6745302 6745404 -152854379 + MMERVK10C-int LTR ERVK 1 103 -7478 2 636 234 214 0 0 chr3 6745404 6745446 -152854337 + RLTR27 LTR ERVK 231 272 -37 2 636 640 157 52 0 chr3 6745469 6745584 -152854199 + MMERVK10C-int LTR ERVK 441 561 -7020 2 636 1084 128 45 25 chr3 6745567 6745768 -152854015 + MMERVK10C-int LTR ERVK 668 872 -6709 2 636 1529 186 196 33 chr3 6745745 6746174 -152853609 + RMER16-int LTR ERVK 317 815 -4591 2 636 310 119 0 0 chr3 6746170 6746212 -152853571 + RMER16-int LTR ERVK 951 992 -995 2 636 521 300 34 26 chr3 6746351 6746630 -152853153 + IAPEY3-int LTR ERVK 822 1061 -5481 2 636 319 216 0 13 chr3 6746646 6746721 -152853062 + IAP-d-int LTR ERVK 447 520 -6022 2 636 1525 100 121 0 chr3 6746688 6746927 -152852856 + IAP-d-int LTR ERVK 4988 5255 -1287 2 636 2007 117 35 1 chr3 6746927 6747307 -152852476 + IAPEY3-int LTR ERVK 6965 7385 -295 2 636 1515 195 47 65 chr3 6747307 6747751 -152852032 - RLTR10C LTR ERVK 0 436 1 2 636 4191 168 25 59 chr3 6747751 6748077 -152851706 + Lx2B LINE L1 5036 5312 -571 2 636 1126 90 0 0 chr3 6748077 6748222 -152851561 - B1_Mus1 SINE Alu -2 146 2 2 636 6633 180 58 26 chr3 6748222 6749797 -152849986 + Lx2B LINE L1 5313 6996 -4 2 636 652 330 109 33 chr3 6749886 6750252 -152849531 - MTE-int LTR MaLR -255 1325 932 2 636 294 164 0 0 chr3 6750340 6750395 -152849388 + A-rich Low_complexity Low_complexity 2 56 0 2 636 1013 150 0 6 chr3 6750541 6750722 -152849061 + CT-rich Low_complexity Low_complexity 1 180 0 2 636 2552 43 0 47 chr3 6750722 6751060 -152848723 - RLTRETN_Mm LTR ERVK 0 322 1 2 636 371 21 21 0 chr3 6751060 6751108 -152848675 + (TTTC)n Simple_repeat Simple_repeat 2 50 0 3 636 646 308 28 0 chr3 6751282 6751464 -152848319 + B3 SINE B2 1 187 -29 3 636 419 0 20 0 chr3 6751472 6751523 -152848260 + (TAGA)n Simple_repeat Simple_repeat 1 52 0 3 636 524 282 14 7 chr3 6752963 6753106 -152846677 + B1F SINE Alu 3 146 -3 3 636 1198 41 0 7 chr3 6753719 6753866 -152845917 + B1_Mm SINE Alu 2 147 0 3 636 516 160 0 0 chr3 6753866 6753966 -152845817 + A-rich Low_complexity Low_complexity 1 100 0 3 636 21 36 0 0 chr3 6754089 6754117 -152845666 + AT_rich Low_complexity Low_complexity 1 28 0 3 636 21 0 0 0 chr3 6754485 6754506 -152845277 + AT_rich Low_complexity Low_complexity 1 21 0 3 636 559 330 75 106 chr3 6754827 6755213 -152844570 - Lx8 LINE L1 -454 7019 6646 3 636 321 117 0 0 chr3 6755220 6755280 -152844503 + (TG)n Simple_repeat Simple_repeat 1 60 0 3 636 483 304 39 65 chr3 6755880 6756207 -152843576 - MTE-int LTR MaLR -1084 496 158 3 636 2739 238 13 26 chr3 6756150 6756775 -152843008 + RMER20B LTR ERVK 10 626 -1 3 636 1067 298 44 85 chr3 6757162 6757365 -152842418 + MTD LTR MaLR 2 182 -237 3 636 637 230 65 0 chr3 6757365 6757504 -152842279 + B1_Mur2 SINE Alu 1 148 -1 3 636 1067 298 44 85 chr3 6757504 6757736 -152842047 + MTD LTR MaLR 183 419 0 3 636 517 305 84 28 chr3 6757865 6758044 -152841739 - B3 SINE B2 -27 189 1 3 636 338 219 0 0 chr3 6758654 6758718 -152841065 + MTD LTR MaLR 13 76 -343 3 636 322 294 11 0 chr3 6758805 6758897 -152840886 + MTD LTR MaLR 226 318 -101 3 636 402 298 27 55 chr3 6758900 6759120 -152840663 - RLTR15 LTR ERVK -9 350 137 3 636 488 274 66 57 chr3 6759640 6759884 -152839899 - RLTR15 LTR ERVK -22 337 92 3 636 392 211 14 7 chr3 6759885 6759997 -152839786 + MTD LTR MaLR 307 421 0 3 636 1096 90 0 0 chr3 6760273 6760418 -152839365 + B1_Mus2 SINE Alu 3 147 0 3 636 477 148 0 0 chr3 6760418 6760499 -152839284 + (A)n Simple_repeat Simple_repeat 1 81 0 3 636 1439 77 5 0 chr3 6760671 6760878 -152838905 - L1Md_F2 LINE L1 0 6582 6375 3 636 3756 167 81 69 chr3 6761010 6761940 -152837843 - RLTR25A LTR ERVK -181 847 1 3 636 342 0 0 0 chr3 6763311 6763349 -152836434 + (TAAA)n Simple_repeat Simple_repeat 2 39 0 3 636 246 294 108 8 chr3 6763610 6763730 -152836053 - MLT1B LTR MaLR -49 341 210 3 636 275 337 21 21 chr3 6764323 6764420 -152835363 + MLT1F LTR MaLR 393 489 -59 3 636 704 319 41 12 chr3 6764510 6764946 -152834837 + L1_Mur3 LINE L1 5053 5538 -651 3 636 22 0 0 0 chr3 6765319 6765341 -152834442 + AT_rich Low_complexity Low_complexity 1 22 0 3 636 36 23 0 0 chr3 6765430 6765473 -152834310 + AT_rich Low_complexity Low_complexity 1 43 0 3 636 504 270 24 8 chr3 6765525 6765652 -152834131 + B1_Mur1 SINE Alu 12 140 -9 3 636 40 59 0 0 chr3 6765652 6765720 -152834063 + AT_rich Low_complexity Low_complexity 1 68 0 3 636 330 26 0 0 chr3 6765849 6765888 -152833895 + (CCTA)n Simple_repeat Simple_repeat 3 41 0 3 636 360 56 0 0 chr3 6766790 6766844 -152832939 + L1_Mus2 LINE L1 6513 6566 0 3 636 28 61 0 0 chr3 6767069 6767118 -152832665 + AT_rich Low_complexity Low_complexity 1 49 0 3 636 277 382 16 8 chr3 6767399 6767523 -152832260 - L2 LINE L2 -991 2428 2304 3 636 710 277 51 31 chr3 6767523 6767760 -152832023 + L1M2 LINE L1 5420 5659 -641 3 636 5176 121 17 67 chr3 6767760 6768710 -152831073 - RLTR13D6 LTR ERVK 0 902 1 3 636 710 277 51 31 chr3 6768710 6768826 -152830957 + L1M2 LINE L1 5660 5780 -520 3 636 189 109 55 0 chr3 6768838 6768893 -152830890 + T-rich Low_complexity Low_complexity 4 61 0 3 636 522 345 131 27 chr3 6769014 6769312 -152830471 + MTEa LTR MaLR 1 329 -50 3 636 4129 242 81 24 chr3 6769360 6769528 -152830255 + Lx9 LINE L1 6358 6524 -1120 3 636 1927 166 6 0 chr3 6769528 6769853 -152829930 - ORR1A2 LTR MaLR 0 327 1 3 636 4129 242 81 24 chr3 6769853 6770901 -152828882 + Lx9 LINE L1 6525 7643 -1 3 636 1022 290 77 34 chr3 6771031 6771084 -152828699 + Lx9 LINE L1 6965 7018 -626 3 636 285 29 0 0 chr3 6771084 6771118 -152828665 + (CA)n Simple_repeat Simple_repeat 1 34 0 3 636 1022 290 77 34 chr3 6771118 6771529 -152828254 + Lx9 LINE L1 7019 7448 -196 3 636 3168 224 84 17 chr3 6771585 6772448 -152827335 + RMER1A Other Other 267 1018 -12 3 636 183 235 0 0 chr3 6772581 6772632 -152827151 + (TATATG)n Simple_repeat Simple_repeat 4 54 0 3 636 240 378 0 0 chr3 6774677 6774759 -152825024 + ID SINE ID 1 82 -142 3 636 24 67 0 0 chr3 6775230 6775275 -152824508 + AT_rich Low_complexity Low_complexity 1 45 0 3 636 2003 87 26 16 chr3 6775306 6775610 -152824173 - L1_Mus2 LINE L1 0 6566 6260 3 636 7185 83 23 2 chr3 6775610 6776903 -152822880 + L1_Mus2 LINE L1 5244 6566 0 3 636 525 107 3 0 chr3 6776940 6777018 -152822765 + L1_Mus2 LINE L1 6202 6281 -373 3 636 201 186 0 23 chr3 6777460 6777504 -152822279 + GA-rich Low_complexity Low_complexity 2 44 0 3 636 864 55 0 0 chr3 6777588 6777698 -152822085 + (GA)n Simple_repeat Simple_repeat 1 110 0 3 636 5085 137 63 16 chr3 6778063 6778992 -152820791 + Lx LINE L1 5673 6645 -9 3 636 385 353 44 0 chr3 6779049 6779253 -152820530 + ID_B1 SINE B4 2 214 -10 3 636 188 67 33 0 chr3 6779263 6779293 -152820490 + (GAAA)n Simple_repeat Simple_repeat 2 32 0 3 636 2197 193 74 163 chr3 6779577 6779774 -152820009 + Lx6 LINE L1 5095 5287 -593 3 636 5476 35 0 0 chr3 6779774 6780423 -152819360 + L1Md_T LINE L1 5934 6582 0 3 636 2197 193 74 163 chr3 6780423 6780658 -152819125 + Lx6 LINE L1 5288 5417 -463 3 636 1099 108 0 0 chr3 6780658 6780806 -152818977 - B1_Mus1 SINE Alu 0 148 1 3 636 2197 201 122 116 chr3 6780806 6781455 -152818328 + Lx6 LINE L1 5418 6135 -1325 3 636 459 107 0 0 chr3 6781479 6781563 -152818220 + (GA)n Simple_repeat Simple_repeat 2 85 0 3 636 189 74 0 0 chr3 6783089 6783116 -152816667 + (CA)n Simple_repeat Simple_repeat 2 28 0 3 636 458 61 0 15 chr3 6783117 6783184 -152816599 + (GA)n Simple_repeat Simple_repeat 2 67 0 3 636 4111 13 0 0 chr3 6783819 6784289 -152815494 + L1Md_T LINE L1 5117 5586 -297 3 636 8055 52 0 0 chr3 6784289 6785285 -152814498 + L1Md_T LINE L1 5587 6582 0 3 636 447 19 0 0 chr3 6785485 6785537 -152814246 + (A)n Simple_repeat Simple_repeat 1 52 0 3 636 360 0 0 0 chr3 6785797 6785837 -152813946 + (TG)n Simple_repeat Simple_repeat 2 41 0 3 636 6179 135 39 34 chr3 6786065 6786437 -152813346 + Lx LINE L1 5488 5866 -788 3 636 410 0 0 20 chr3 6786437 6786488 -152813295 + (CAAAA)n Simple_repeat Simple_repeat 1 50 0 3 636 6179 123 43 38 chr3 6786488 6786615 -152813168 + Lx LINE L1 5867 5999 -655 3 636 243 0 0 0 chr3 6786615 6786642 -152813141 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 3 636 955 103 7 0 chr3 6786643 6786779 -152813004 - B1_Mus1 SINE Alu -10 138 2 3 636 6179 123 43 38 chr3 6786779 6787432 -152812351 + Lx LINE L1 6000 6648 -6 3 636 22 35 0 0 chr3 6787994 6788023 -152811760 + AT_rich Low_complexity Low_complexity 1 29 0 3 636 451 322 79 37 chr3 6788548 6788738 -152811045 - B3A SINE B2 0 198 1 3 636 1835 158 16 6 chr3 6790553 6790871 -152808912 + ORR1A4 LTR MaLR 9 329 0 3 636 22 0 0 0 chr3 6790895 6790917 -152808866 + AT_rich Low_complexity Low_complexity 1 22 0 3 636 22 0 0 0 chr3 6790943 6790965 -152808818 + AT_rich Low_complexity Low_complexity 1 22 0 3 636 458 285 7 0 chr3 6791392 6791529 -152808254 - B1_Mur1 SINE Alu -11 138 1 3 636 7287 93 40 3 chr3 6791766 6793421 -152806362 + L1VL1 LINE L1 187 1912 -1786 3 636 6661 103 3 25 chr3 6793416 6795000 -152804783 + L1_Mus1 LINE L1 5020 6566 -1 3 636 370 245 12 182 chr3 6795127 6795297 -152804486 + Lx6 LINE L1 7259 7399 -61 3 636 6281 70 2 5 chr3 6795297 6796106 -152803677 + L1_Mus1 LINE L1 5761 6567 0 3 636 507 123 0 0 chr3 6796435 6796516 -152803267 + (CA)n Simple_repeat Simple_repeat 2 82 0 3 636 357 24 0 0 chr3 6796579 6796621 -152803162 + (GTTTG)n Simple_repeat Simple_repeat 2 43 0 3 636 270 169 0 0 chr3 6798399 6798458 -152801325 - L1Md_T LINE L1 -3 6579 6521 3 636 7144 47 1 0 chr3 6798458 6799309 -152800474 - IAPEY3-int LTR ERVK -2041 5639 4788 3 636 4118 117 12 13 chr3 6799309 6799987 -152799796 - IAPEy-int LTR ERVK -6455 1058 382 3 636 1845 63 0 12 chr3 6799984 6800225 -152799558 - IAPEy-int LTR ERVK -7275 238 1 3 636 3173 50 3 0 chr3 6800225 6800609 -152799174 - IAPEY_LTR LTR ERVK 0 385 1 3 636 279 0 0 0 chr3 6802370 6802401 -152797382 + (TG)n Simple_repeat Simple_repeat 2 32 0 3 636 219 36 0 0 chr3 6802682 6802710 -152797073 + (CA)n Simple_repeat Simple_repeat 2 29 0 3 636 549 0 0 0 chr3 6803272 6803333 -152796450 + (GA)n Simple_repeat Simple_repeat 2 62 0 3 636 554 309 116 11 chr3 6803485 6803675 -152796108 - B3 SINE B2 -6 210 1 3 636 2465 139 56 14 chr3 6804228 6804659 -152795124 - Lx2 LINE L1 -4 6993 6545 3 636 269 51 26 0 chr3 6805299 6805338 -152794445 + (TA)n Simple_repeat Simple_repeat 2 41 0 3 636 315 0 0 0 chr3 6808564 6808599 -152791184 + (TG)n Simple_repeat Simple_repeat 1 35 0 3 636 283 277 52 125 chr3 6808647 6808783 -152791000 - B1F SINE Alu 0 149 24 3 636 1548 11 0 0 chr3 6809826 6810004 -152789779 + (GGGAGA)n Simple_repeat Simple_repeat 3 180 0 3 636 21 36 0 0 chr3 6810634 6810662 -152789121 + AT_rich Low_complexity Low_complexity 1 28 0 3 636 585 42 0 0 chr3 6810677 6810749 -152789034 + (TTTC)n Simple_repeat Simple_repeat 4 75 0 3 636 331 184 0 22 chr3 6812071 6812160 -152787623 + CT-rich Low_complexity Low_complexity 1 87 0 3 636 220 196 0 0 chr3 6814517 6814563 -152785220 + T-rich Low_complexity Low_complexity 5 50 0 3 636 21 57 0 0 chr3 6814885 6814920 -152784863 + AT_rich Low_complexity Low_complexity 1 35 0 3 636 698 217 22 0 chr3 6814920 6815058 -152784725 - B1_Mur4 SINE Alu -9 141 1 3 636 317 227 25 51 chr3 6815157 6815236 -152784547 - MTC LTR MaLR -344 77 1 3 636 292 296 99 12 chr3 6815520 6815681 -152784102 - Lx9 LINE L1 -628 7016 6842 3 79 548 212 31 131 chr3 6815678 6815900 -152783883 + L1_Mur3 LINE L1 4482 4681 -1199 3 637 1062 89 14 0 chr3 6816402 6816548 -152783235 + B1_Mus1 SINE Alu 1 148 0 4 637 340 0 83 0 chr3 6816550 6816610 -152783173 + (CAA)n Simple_repeat Simple_repeat 2 66 0 4 637 303 286 76 19 chr3 6816654 6816864 -152782919 + L1MA4 LINE L1 5715 5936 -364 4 637 1121 220 4 22 chr3 6817221 6817453 -152782330 - ORR1C2 LTR MaLR -150 234 7 4 637 225 175 49 49 chr3 6818653 6818755 -152781028 + (TTATA)n Simple_repeat Simple_repeat 1 102 0 4 637 204 125 0 0 chr3 6820201 6820233 -152779550 + (TATG)n Simple_repeat Simple_repeat 1 32 0 4 637 3496 114 22 9 chr3 6820452 6820993 -152778790 - L1_Mus3 LINE L1 0 6638 6091 4 637 712 273 52 9 chr3 6821198 6821404 -152778379 + RLTR18B LTR ERVK 1 204 -412 4 637 21 36 0 0 chr3 6821824 6821852 -152777931 + AT_rich Low_complexity Low_complexity 1 28 0 4 637 421 305 51 57 chr3 6822101 6822278 -152777505 + RLTR18B LTR ERVK 93 268 -244 4 637 357 250 21 121 chr3 6822618 6822759 -152777024 - L1MA4 LINE L1 -368 5932 5806 4 637 21 0 0 0 chr3 6822971 6822992 -152776791 + AT_rich Low_complexity Low_complexity 1 21 0 4 637 407 315 59 59 chr3 6823046 6823299 -152776484 - Lx8 LINE L1 0 7473 7221 4 637 587 211 26 39 chr3 6823299 6823452 -152776331 + RMER13B LTR ERVK 1 151 -807 4 637 1460 261 44 50 chr3 6823456 6824060 -152775723 + RMER13B LTR ERVK 321 914 -44 4 637 287 243 0 0 chr3 6824277 6824347 -152775436 - L1M2 LINE L1 -3102 3041 2972 4 637 26 30 0 0 chr3 6824793 6824826 -152774957 + AT_rich Low_complexity Low_complexity 1 33 0 4 637 307 331 0 118 chr3 6824838 6825016 -152774767 + HAL1-3A_ME LINE L1 2286 2442 -416 4 637 195 152 0 0 chr3 6825934 6825980 -152773803 + T-rich Low_complexity Low_complexity 1 46 0 4 637 252 0 0 0 chr3 6827304 6827332 -152772451 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 4 637 475 191 37 73 chr3 6827366 6827502 -152772281 - Lx3C LINE L1 -10 6966 6836 4 637 1548 157 18 4 chr3 6827525 6827800 -152771983 + Lx3B LINE L1 5913 6191 -782 4 637 27 62 0 0 chr3 6827808 6827856 -152771927 + AT_rich Low_complexity Low_complexity 1 48 0 4 637 484 35 0 54 chr3 6829101 6829193 -152770590 + (TTTTTG)n Simple_repeat Simple_repeat 2 88 0 4 637 6999 59 10 1 chr3 6829915 6830800 -152768983 + RLTR13B1 LTR ERVK 1 893 0 4 637 329 176 0 13 chr3 6830900 6830975 -152768808 - L1_Mur3 LINE L1 -13 5867 5794 4 637 5037 99 14 8 chr3 6830975 6831709 -152768074 - L1_Mus3 LINE L1 -6 6632 5895 4 637 4188 156 6 1 chr3 6831725 6832414 -152767369 + L1_Mm LINE L1 5190 5881 -2 4 637 2250 175 134 6 chr3 6832427 6832934 -152766849 - L1_Mur3 LINE L1 -77 5803 5232 4 637 624 221 0 0 chr3 6832935 6833089 -152766694 + (TA)n Simple_repeat Simple_repeat 1 154 0 4 637 422 256 14 57 chr3 6833089 6833230 -152766553 - L1_Mur3 LINE L1 -651 5229 5095 4 637 1161 231 24 16 chr3 6833219 6833601 -152766182 - L1_Mur3 LINE L1 -2416 3464 3080 4 637 1239 175 150 29 chr3 6833573 6833879 -152765904 - L1_Mur3 LINE L1 -3056 2824 2482 4 637 2292 167 58 2 chr3 6833893 6834325 -152765458 - Lx4A LINE L1 -2 7056 6601 4 637 5919 206 38 22 chr3 6834325 6835574 -152764209 + Lx2B LINE L1 5714 6983 -17 4 637 6875 170 3 23 chr3 6835592 6835841 -152763942 - L1_Mur2 LINE L1 -710 5167 4917 4 637 1075 122 0 0 chr3 6835841 6835988 -152763795 + B1_Mus1 SINE Alu 2 148 0 4 637 6875 170 3 23 chr3 6835988 6837024 -152762759 - L1_Mur2 LINE L1 -961 4916 3908 4 637 4285 143 17 0 chr3 6837022 6837727 -152762056 + L1_Mm LINE L1 5167 5883 0 4 637 2856 30 3 0 chr3 6837769 6838100 -152761683 + IAPEY3_LTR LTR ERVK 1 332 0 4 637 2043 188 96 100 chr3 6838104 6838665 -152761118 + Lx LINE L1 6096 6654 0 4 637 748 126 36 0 chr3 6838707 6838818 -152760965 - Lx4A LINE L1 -451 6607 6493 4 637 3054 224 76 21 chr3 6838816 6839198 -152760585 - L1_Mur3 LINE L1 -3421 2459 2059 4 637 261 0 0 0 chr3 6839198 6839227 -152760556 + (TG)n Simple_repeat Simple_repeat 2 30 0 4 637 3054 224 76 21 chr3 6839227 6839821 -152759962 - L1_Mur3 LINE L1 -3822 2058 1431 4 637 8282 150 29 16 chr3 6839825 6841251 -152758532 - Lx2 LINE L1 -1 6996 5579 4 637 1347 261 128 7 chr3 6841253 6841674 -152758109 - L1_Mur3 LINE L1 -6825 903 432 4 637 293 348 0 2 chr3 6841792 6841935 -152757848 - L1M3 LINE L1 -537 5775 5634 4 637 588 65 0 0 chr3 6842007 6842084 -152757699 + (CATA)n Simple_repeat Simple_repeat 4 80 0 4 637 1566 147 0 42 chr3 6842110 6842192 -152757591 - RMER6C LTR ERVK -3 687 612 4 637 5386 148 19 37 chr3 6842192 6843234 -152756549 + RLTR13D2 LTR ERVK 1 1023 0 4 637 1566 147 0 42 chr3 6843234 6843436 -152756347 - RMER6C LTR ERVK -79 611 415 4 637 551 182 81 24 chr3 6843491 6843670 -152756113 - RMER6C LTR ERVK -487 233 1 4 637 224 163 0 23 chr3 6843799 6843843 -152755940 + A-rich Low_complexity Low_complexity 1 43 0 4 637 21 36 0 0 chr3 6847144 6847172 -152752611 + AT_rich Low_complexity Low_complexity 1 28 0 4 637 728 265 122 8 chr3 6847563 6847818 -152751965 + Lx7 LINE L1 7080 7363 -333 4 637 693 66 0 0 chr3 6847875 6847966 -152751817 + (TC)n Simple_repeat Simple_repeat 2 92 0 4 637 225 0 0 0 chr3 6847966 6847990 -152751793 + (TG)n Simple_repeat Simple_repeat 2 26 0 4 637 248 292 81 59 chr3 6848013 6848333 -152751450 + L1MEf LINE L1 543 869 -5176 4 637 242 167 0 48 chr3 6848428 6848491 -152751292 - Lx8 LINE L1 -2 7471 7412 4 637 24 32 0 0 chr3 6848610 6848641 -152751142 + AT_rich Low_complexity Low_complexity 1 31 0 4 637 205 250 0 0 chr3 6848879 6848927 -152750856 + GA-rich Low_complexity Low_complexity 2 49 0 4 637 389 338 133 75 chr3 6848931 6849434 -152750349 + L1MEf LINE L1 1567 2098 -4562 4 637 35340 35 0 0 chr3 6849967 6855435 -152744348 + L1Md_T LINE L1 25 5589 -297 4 637 8861 9 0 2 chr3 6855435 6856465 -152743318 + L1Md_T LINE L1 5590 6585 0 4 637 5401 82 94 1 chr3 6856465 6857239 -152742544 + L1_Mus3 LINE L1 5783 6628 -10 4 637 21 0 0 0 chr3 6857384 6857405 -152742378 + AT_rich Low_complexity Low_complexity 1 21 0 4 637 207 0 0 0 chr3 6857474 6857497 -152742286 + (TG)n Simple_repeat Simple_repeat 1 23 0 4 637 927 57 0 0 chr3 6857640 6857764 -152742019 - L1_Mus1 LINE L1 -1 6566 6443 4 637 228 149 0 0 chr3 6857782 6857829 -152741954 + (GA)n Simple_repeat Simple_repeat 2 48 0 4 637 349 351 91 38 chr3 6858063 6858273 -152741510 + B4A SINE B4 60 280 -12 4 637 387 0 0 0 chr3 6858310 6858353 -152741430 + (CA)n Simple_repeat Simple_repeat 2 44 0 4 637 423 0 0 0 chr3 6858353 6858399 -152741384 + (GA)n Simple_repeat Simple_repeat 2 48 0 4 637 211 434 19 0 chr3 6858687 6858793 -152740990 + PB1D7 SINE Alu 4 111 -9 4 637 216 238 0 0 chr3 6858864 6858927 -152740856 + (TA)n Simple_repeat Simple_repeat 2 64 0 4 637 815 98 8 0 chr3 6860312 6860435 -152739348 + (TCTA)n Simple_repeat Simple_repeat 4 127 0 4 637 23 0 0 0 chr3 6861644 6861667 -152738116 + AT_rich Low_complexity Low_complexity 1 23 0 4 637 3023 71 2 5 chr3 6861967 6862364 -152737419 - MTA_Mm LTR MaLR 0 396 1 4 637 7975 77 17 2 chr3 6862364 6863446 -152736337 - MTA_Mm-int LTR MaLR 0 1098 1 4 637 2900 75 18 5 chr3 6863446 6863837 -152735946 - MTA_Mm LTR MaLR 0 396 1 4 637 202 87 0 42 chr3 6863996 6864044 -152735739 + (CAAA)n Simple_repeat Simple_repeat 2 47 0 4 637 1560 141 54 26 chr3 6864475 6864788 -152734995 + RLTRETN_Mm LTR ERVK 1 322 0 4 637 5353 116 78 9 chr3 6864820 6865668 -152734115 + RMER17A2 LTR ERVK 1 906 0 4 637 499 248 0 34 chr3 6865670 6865787 -152733996 + RMER17A-int LTR ERVK 3 115 -1613 4 637 189 0 0 0 chr3 6865795 6865816 -152733967 + (A)n Simple_repeat Simple_repeat 1 21 0 4 637 387 0 0 0 chr3 6865838 6865881 -152733902 + (TC)n Simple_repeat Simple_repeat 1 43 0 4 637 4678 142 69 54 chr3 6866166 6867170 -152732613 + RMER17A-int LTR ERVK 708 1726 -2 4 637 803 160 33 20 chr3 6867172 6867325 -152732458 + RMER17A2 LTR ERVK 1 155 -751 4 637 341 155 94 12 chr3 6867303 6867388 -152732395 + RMER17A2 LTR ERVK 815 906 0 4 637 684 232 169 6 chr3 6868480 6868658 -152731125 - B3 SINE B2 0 216 10 4 637 212 228 17 34 chr3 6868863 6868922 -152730861 - L2 LINE L2 -938 2481 2424 4 637 194 350 62 0 chr3 6868978 6869058 -152730725 + MIR SINE MIR 163 247 -15 4 637 284 328 115 74 chr3 6869226 6869549 -152730234 - MLT1A0 LTR MaLR -1 364 29 4 637 8084 2 0 0 chr3 6869856 6870750 -152729033 + L1Md_A LINE L1 5689 6582 0 4 637 337 138 69 42 chr3 6871034 6871178 -152728605 + (TAGA)n Simple_repeat Simple_repeat 3 150 0 4 637 243 0 0 0 chr3 6873310 6873337 -152726446 + (TG)n Simple_repeat Simple_repeat 2 28 0 4 637 576 0 0 0 chr3 6873342 6873406 -152726377 + (GA)n Simple_repeat Simple_repeat 1 64 0 4 637 644 371 49 8 chr3 6873710 6873976 -152725807 + B4 SINE B4 5 281 -11 4 637 414 0 0 0 chr3 6874121 6874167 -152725616 + (CA)n Simple_repeat Simple_repeat 1 46 0 4 637 4481 51 20 7 chr3 6874483 6875040 -152724743 - LTRIS2 LTR ERV1 0 564 1 4 637 22 0 0 0 chr3 6876775 6876797 -152722986 + AT_rich Low_complexity Low_complexity 1 22 0 4 637 6709 61 1 2 chr3 6876863 6877717 -152722066 - L1Md_F2 LINE L1 0 6582 5730 4 637 342 0 0 0 chr3 6877916 6877954 -152721829 + (TG)n Simple_repeat Simple_repeat 2 39 0 4 637 405 95 0 0 chr3 6879067 6879130 -152720653 + (TG)n Simple_repeat Simple_repeat 2 64 0 4 637 366 117 0 60 chr3 6879158 6879258 -152720525 + (TCTCTG)n Simple_repeat Simple_repeat 2 95 0 4 637 329 217 45 67 chr3 6879712 6879801 -152719982 + RLTR41 LTR ERV1 91 177 -269 4 637 1773 172 39 7 chr3 6879819 6880124 -152719659 + RLTR41 LTR ERV1 132 446 0 4 637 5484 141 25 8 chr3 6880262 6881177 -152718606 - L1_Mus3 LINE L1 -276 5607 4677 4 637 7392 91 10 1 chr3 6881169 6882179 -152717604 + L1_Mus3 LINE L1 5620 6638 0 4 637 252 100 0 0 chr3 6882889 6882929 -152716854 + (CA)n Simple_repeat Simple_repeat 2 41 0 4 637 248 239 14 27 chr3 6884563 6884636 -152715147 - B4A SINE B4 -220 72 1 4 637 282 56 0 0 chr3 6884840 6884876 -152714907 + (TA)n Simple_repeat Simple_repeat 1 36 0 4 637 23 0 0 0 chr3 6887725 6887748 -152712035 + AT_rich Low_complexity Low_complexity 1 23 0 4 637 1120 74 0 7 chr3 6889957 6890106 -152709677 + B1_Mus1 SINE Alu 1 148 0 4 637 255 93 0 0 chr3 6890106 6890149 -152709634 + (A)n Simple_repeat Simple_repeat 1 43 0 4 637 956 83 35 0 chr3 6890331 6890507 -152709276 - L1Md_F2 LINE L1 0 6582 6414 4 637 231 88 0 0 chr3 6891068 6891102 -152708681 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 4 637 5035 140 31 12 chr3 6891102 6891983 -152707800 - Lx3A LINE L1 -13 6968 6069 4 637 2517 80 18 0 chr3 6891987 6892314 -152707469 + L1_Mur1 LINE L1 5457 5789 -97 4 637 2742 143 12 18 chr3 6892340 6892831 -152706952 + L1_Mus3 LINE L1 6151 6638 0 4 637 533 48 0 0 chr3 6893259 6893321 -152706462 + L1Md_F2 LINE L1 5525 5586 -297 4 637 7863 46 11 6 chr3 6893321 6894300 -152705483 + L1Md_F2 LINE L1 5587 6570 -12 4 637 1134 100 0 10 chr3 6894442 6894745 -152705038 + (TTC)n Simple_repeat Simple_repeat 1 300 0 5 637 237 65 0 0 chr3 6894745 6894776 -152705007 + (TCC)n Simple_repeat Simple_repeat 1 31 0 5 637 241 26 26 26 chr3 6894776 6894815 -152704968 + (TTA)n Simple_repeat Simple_repeat 1 39 0 5 637 436 122 11 22 chr3 6895125 6895217 -152704566 + (TATG)n Simple_repeat Simple_repeat 4 94 0 5 637 33 0 0 0 chr3 6895471 6895504 -152704279 + AT_rich Low_complexity Low_complexity 1 33 0 5 637 22 91 0 11 chr3 6896510 6896529 -152703254 + AT_rich Low_complexity Low_complexity 1 19 0 5 637 2615 76 128 5 chr3 6896529 6896926 -152702857 + Lx3_Mus LINE L1 6556 7001 -8 5 637 22 91 0 11 chr3 6896926 6896995 -152702788 + AT_rich Low_complexity Low_complexity 1 69 0 5 637 22 0 0 0 chr3 6897091 6897113 -152702670 + AT_rich Low_complexity Low_complexity 1 22 0 5 637 31 0 0 0 chr3 6898396 6898427 -152701356 + AT_rich Low_complexity Low_complexity 1 31 0 5 637 368 191 0 11 chr3 6898953 6899043 -152700740 + (CAGAGA)n Simple_repeat Simple_repeat 2 90 0 5 637 36984 24 3 7 chr3 6899560 6904752 -152695031 + L1Md_T LINE L1 423 5585 -298 5 637 8321 39 0 0 chr3 6904753 6905747 -152694036 + L1Md_T LINE L1 5587 6580 -2 5 637 435 330 27 90 chr3 6906926 6907149 -152692634 + MER54A LTR ERVL 211 419 -482 5 637 226 308 12 49 chr3 6907179 6907261 -152692522 + ORR1A1-int LTR MaLR 713 791 -1001 5 637 4442 75 12 3 chr3 6907400 6907991 -152691792 - L1_Mus3 LINE L1 -319 6319 5724 5 637 1788 103 84 11 chr3 6907991 6908275 -152691508 + L1_Mus3 LINE L1 6332 6636 -2 5 637 24 0 0 0 chr3 6908722 6908746 -152691037 + AT_rich Low_complexity Low_complexity 1 24 0 5 637 37 0 0 0 chr3 6909466 6909503 -152690280 + AT_rich Low_complexity Low_complexity 1 37 0 5 637 182 374 29 48 chr3 6909656 6909760 -152690023 - L2b LINE L2 -298 3077 2976 5 637 4412 12 2 0 chr3 6909931 6910423 -152689360 + MT2_Mm LTR ERVL 1 493 0 5 637 47156 17 7 0 chr3 6910423 6915746 -152684037 + MERVL-int LTR ERVL 1 5360 -125 5 637 375 179 46 35 chr3 6915746 6915833 -152683950 + ORR1A3-int LTR MaLR 553 640 -1323 5 637 314 0 0 0 chr3 6915833 6915871 -152683912 + MERVL-int LTR ERVL 5448 5485 0 5 637 4412 12 2 0 chr3 6915871 6916363 -152683420 + MT2_Mm LTR ERVL 1 493 0 5 637 1776 105 18 14 chr3 6917179 6917460 -152682323 + L1Md_F2 LINE L1 6298 6579 -3 5 637 349 298 61 41 chr3 6919003 6919150 -152680633 - MIRb SINE MIR -93 175 26 5 637 198 171 0 0 chr3 6919294 6919335 -152680448 + (TG)n Simple_repeat Simple_repeat 1 41 0 5 637 334 20 60 0 chr3 6919396 6919446 -152680337 + (CAAA)n Simple_repeat Simple_repeat 1 53 0 5 637 28 0 0 0 chr3 6919886 6919914 -152679869 + AT_rich Low_complexity Low_complexity 1 28 0 5 637 34 42 0 0 chr3 6920113 6920161 -152679622 + AT_rich Low_complexity Low_complexity 1 48 0 5 637 645 125 25 0 chr3 6920891 6921011 -152678772 + (GA)n Simple_repeat Simple_repeat 1 123 0 5 637 296 265 153 125 chr3 6921588 6921804 -152677979 - B4 SINE B4 -70 222 1 5 637 276 30 0 0 chr3 6922108 6922141 -152677642 + (TA)n Simple_repeat Simple_repeat 1 33 0 5 637 194 267 35 118 chr3 6922368 6922453 -152677330 + MIR SINE MIR 96 173 -89 5 637 4576 117 132 19 chr3 6922464 6923274 -152676509 - RLTR13D6 LTR ERVK 0 902 1 5 637 216 329 154 39 chr3 6923611 6923889 -152675894 - L2a LINE L2 -286 3140 2829 5 637 370 256 13 102 chr3 6924616 6924790 -152674993 - L1MA4 LINE L1 -472 5828 5625 5 637 4912 100 24 0 chr3 6927605 6928325 -152671458 + Lx LINE L1 5545 6281 -373 5 637 225 0 0 0 chr3 6928457 6928482 -152671301 + (T)n Simple_repeat Simple_repeat 1 25 0 5 637 211 72 23 23 chr3 6928882 6928925 -152670858 + (TTTTTG)n Simple_repeat Simple_repeat 2 44 0 5 637 434 344 67 6 chr3 6929498 6929662 -152670121 + B3A SINE B2 3 176 -22 5 637 282 73 0 0 chr3 6929663 6929704 -152670079 + (CA)n Simple_repeat Simple_repeat 2 42 0 5 637 321 156 0 0 chr3 6929705 6929782 -152670001 + GA-rich Low_complexity Low_complexity 2 78 0 5 637 384 221 114 59 chr3 6930204 6930406 -152669377 - Lx9 LINE L1 -2 7642 7430 5 637 342 214 0 0 chr3 6930728 6930817 -152668966 + (CA)n Simple_repeat Simple_repeat 2 90 0 5 637 1104 90 7 0 chr3 6934016 6934161 -152665622 + B1_Mus2 SINE Alu 1 146 -1 5 637 442 56 55 22 chr3 6934169 6934260 -152665523 + (CAAA)n Simple_repeat Simple_repeat 2 95 0 5 637 332 306 0 18 chr3 6934392 6934505 -152665278 + GA-rich Low_complexity Low_complexity 2 112 0 5 637 1888 144 34 34 chr3 6935877 6936235 -152663548 + Lx2 LINE L1 6635 6992 -5 5 637 3238 51 0 5 chr3 6938011 6938409 -152661374 - MTA_Mm LTR MaLR 0 396 1 5 637 261 213 0 0 chr3 6938578 6938625 -152661158 + RLTR11A2 LTR ERVK 478 524 -3 5 637 2717 209 69 43 chr3 6938708 6939375 -152660408 - Lx9 LINE L1 -183 7461 6778 5 637 257 366 35 9 chr3 6940803 6940916 -152658867 - MIRb SINE MIR -36 232 117 5 79 30032 47 13 3 chr3 6940990 6947200 -152652583 - L1Md_T LINE L1 0 6582 348 5 638 23 33 0 0 chr3 6947288 6947318 -152652465 + AT_rich Low_complexity Low_complexity 1 30 0 5 638 1031 59 43 16 chr3 6947569 6948011 -152651772 + (CA)n Simple_repeat Simple_repeat 1 454 0 5 638 243 222 0 0 chr3 6948732 6948777 -152651006 + RLTR24 LTR ERV1 1 45 -484 5 638 4326 42 2 2 chr3 6948880 6949405 -152650378 + L1Md_F3 LINE L1 6060 6584 0 5 638 258 275 170 82 chr3 6949442 6949624 -152650159 + RLTR24 LTR ERV1 332 529 0 5 638 355 332 66 40 chr3 6949852 6950078 -152649705 - L1MDa LINE L1 -4627 2006 1775 5 638 526 185 12 56 chr3 6950252 6950412 -152649371 - RLTR10A LTR ERVK 0 411 259 5 638 1362 51 4 4 chr3 6950527 6950704 -152649079 - RLTR10-int LTR ERVK -7314 267 41 5 638 2535 51 102 3 chr3 6950714 6951046 -152648737 - RLTR10B2 LTR ERVK 0 365 1 5 638 211 122 41 0 chr3 6951062 6951111 -152648672 + T-rich Low_complexity Low_complexity 2 52 0 5 638 357 352 24 8 chr3 6951183 6951309 -152648474 - B1F SINE Alu 0 149 22 5 638 393 117 0 0 chr3 6951412 6951472 -152648311 + (TA)n Simple_repeat Simple_repeat 2 61 0 5 638 282 219 0 0 chr3 6951803 6951867 -152647916 + (TAAA)n Simple_repeat Simple_repeat 1 64 0 5 638 235 370 67 22 chr3 6951884 6952108 -152647675 + Lx8 LINE L1 7235 7468 -5 5 638 392 215 9 0 chr3 6953196 6953303 -152646480 + GA-rich Low_complexity Low_complexity 4 111 0 5 638 245 323 28 118 chr3 6953469 6953680 -152646103 - L3 LINE CR1 -747 3742 3551 5 638 30 27 0 0 chr3 6954285 6954322 -152645461 + AT_rich Low_complexity Low_complexity 1 37 0 5 638 306 254 29 87 chr3 6954528 6954666 -152645117 + Lx9 LINE L1 6950 7079 -565 5 638 4260 80 8 17 chr3 6954862 6955450 -152644333 - L1Md_F2 LINE L1 -11 6571 5989 5 638 3627 107 16 5 chr3 6955449 6956025 -152643758 - L1_Mus3 LINE L1 -16 6622 6041 5 638 31 26 0 0 chr3 6956230 6956268 -152643515 + AT_rich Low_complexity Low_complexity 1 38 0 5 638 498 96 0 0 chr3 6956396 6956469 -152643314 + (TG)n Simple_repeat Simple_repeat 2 74 0 5 638 1064 124 0 0 chr3 6956660 6956837 -152642946 - Lx3_Mus LINE L1 0 7009 6833 5 638 24 32 0 0 chr3 6956921 6956952 -152642831 + AT_rich Low_complexity Low_complexity 1 31 0 5 638 619 131 17 0 chr3 6957703 6957812 -152641971 + B1_Mus2 SINE Alu 1 120 0 5 638 288 0 0 0 chr3 6957812 6957844 -152641939 + (A)n Simple_repeat Simple_repeat 1 32 0 5 638 182 114 57 0 chr3 6958011 6958046 -152641737 - L2 LINE L2 -1894 1525 1489 5 638 853 109 23 0 chr3 6959130 6959258 -152640525 - B2_Mm2 SINE B2 -10 185 55 5 638 423 0 0 0 chr3 6959281 6959328 -152640455 + (A)n Simple_repeat Simple_repeat 1 47 0 5 638 406 154 0 30 chr3 6959328 6959395 -152640388 - B2_Mm2 SINE B2 -127 68 4 5 638 405 0 0 0 chr3 6960516 6960561 -152639222 + (CA)n Simple_repeat Simple_repeat 2 46 0 5 638 216 0 0 0 chr3 6960561 6960584 -152639199 + (GA)n Simple_repeat Simple_repeat 2 25 0 5 638 230 247 13 25 chr3 6961568 6961647 -152638136 + L1MEc LINE L1 26 103 -6297 5 638 311 331 72 8 chr3 6962004 6962129 -152637654 + L1MEc LINE L1 615 747 -5653 5 638 27 29 0 0 chr3 6962191 6962225 -152637558 + AT_rich Low_complexity Low_complexity 1 34 0 5 638 3726 95 2 0 chr3 6962229 6962744 -152637039 + L1_Mus4 LINE L1 6114 6629 -7 5 638 621 267 103 0 chr3 6963214 6963379 -152636404 - MTD LTR MaLR -108 311 130 5 638 283 217 33 0 chr3 6963389 6963449 -152636334 - L1_Mur1 LINE L1 -1134 4752 4691 5 638 7541 86 9 101 chr3 6963432 6964694 -152635089 + Lx3_Mus LINE L1 4718 5925 -1084 5 638 333 0 0 0 chr3 6964694 6964731 -152635052 + (TAA)n Simple_repeat Simple_repeat 1 37 0 5 638 7541 110 26 14 chr3 6964731 6965824 -152633959 + Lx3_Mus LINE L1 5926 7005 -4 5 638 921 120 0 0 chr3 6965836 6965978 -152633805 + (GAAA)n Simple_repeat Simple_repeat 3 144 0 5 638 4195 151 41 86 chr3 6965992 6966933 -152632850 - RLTR13D6 LTR ERVK -3 899 1 5 638 227 295 0 0 chr3 6966933 6966994 -152632789 - MTD LTR MaLR -311 108 48 5 638 21 57 0 0 chr3 6967727 6967762 -152632021 + AT_rich Low_complexity Low_complexity 1 35 0 5 638 22663 107 10 10 chr3 6968178 6972398 -152627385 - L1_Mus2 LINE L1 0 6566 2348 5 638 2580 122 12 1 chr3 6972409 6972839 -152626944 + L1_Mus2 LINE L1 1909 2371 -3769 5 638 1358 89 16 0 chr3 6972917 6973108 -152626675 + B2_Mm2 SINE B2 1 194 -1 5 638 228 254 124 23 chr3 6973359 6973536 -152626247 - L1MA6 LINE L1 -30 6270 6076 5 638 336 291 125 34 chr3 6973644 6974077 -152625706 - L1ME2 LINE L1 -101 6063 5583 5 638 2615 126 6 47 chr3 6974811 6975239 -152624544 - Lx3_Mus LINE L1 -686 6323 5910 5 638 191 61 30 0 chr3 6975239 6975272 -152624511 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 5 638 2615 126 6 47 chr3 6975272 6975311 -152624472 - Lx3_Mus LINE L1 -1100 5909 5875 5 638 4935 88 10 0 chr3 6975311 6975983 -152623800 + Lx3_Mus LINE L1 6331 7009 0 5 638 341 327 135 11 chr3 6976550 6976831 -152622952 - L1MEc LINE L1 -4802 1598 1283 5 638 1443 285 159 48 chr3 6977826 6979070 -152620713 + RMER1B Other Other 13 1065 -1 5 638 753 67 33 0 chr3 6979888 6980008 -152619775 + (TCTA)n Simple_repeat Simple_repeat 2 125 0 5 638 7564 85 0 1 chr3 6980033 6981380 -152618403 - L1_Mus2 LINE L1 0 6566 5221 5 638 524 126 32 38 chr3 6981380 6981537 -152618246 + (TCTA)n Simple_repeat Simple_repeat 3 158 0 6 638 656 263 24 49 chr3 6982675 6982839 -152616944 + RSINE1 SINE B4 2 161 -4 6 638 3121 184 27 34 chr3 6983037 6983127 -152616656 - L1_Mur2 LINE L1 -690 5187 5097 6 638 2171 179 44 5 chr3 6983127 6983536 -152616247 - Lx2 LINE L1 -1 6996 6572 6 638 3121 184 27 34 chr3 6983536 6984122 -152615661 - L1_Mur2 LINE L1 -781 5096 4518 6 638 450 114 0 0 chr3 6984642 6984712 -152615071 + (A)n Simple_repeat Simple_repeat 1 70 0 6 638 495 0 0 0 chr3 6984784 6984839 -152614944 + (TC)n Simple_repeat Simple_repeat 2 56 0 6 638 930 19 0 0 chr3 6985681 6985789 -152613994 + (GAA)n Simple_repeat Simple_repeat 2 109 0 6 638 3724 104 29 2 chr3 6986793 6987341 -152612442 + Lx3_Mus LINE L1 6439 7001 -8 6 638 282 29 0 0 chr3 6987807 6987842 -152611941 + (CA)n Simple_repeat Simple_repeat 2 36 0 6 638 501 17 0 0 chr3 6987842 6987899 -152611884 + (GA)n Simple_repeat Simple_repeat 2 59 0 6 638 274 291 13 0 chr3 6988434 6988513 -152611270 + CT-rich Low_complexity Low_complexity 5 84 0 6 638 25 75 0 0 chr3 6989992 6990045 -152609738 + AT_rich Low_complexity Low_complexity 1 53 0 6 638 1397 245 112 3 chr3 6990117 6990493 -152609290 - MTC LTR MaLR 0 421 5 6 638 708 12 0 0 chr3 6990664 6990745 -152609038 + (TC)n Simple_repeat Simple_repeat 1 81 0 6 638 613 290 88 91 chr3 6991008 6991372 -152608411 + MTEa LTR MaLR 17 379 0 6 638 280 253 0 10 chr3 6991443 6991539 -152608244 + T-rich Low_complexity Low_complexity 2 96 0 6 638 763 310 40 49 chr3 6991540 6991595 -152608188 + MTE-int LTR MaLR 82 140 -1440 6 638 4155 58 49 2 chr3 6991595 6992130 -152607653 + LTRIS2 LTR ERV1 5 564 0 6 638 763 310 40 49 chr3 6992130 6992403 -152607380 + MTE-int LTR MaLR 141 407 -1173 6 638 824 278 9 28 chr3 6992452 6992479 -152607304 + B3 SINE B2 3 29 -187 6 638 3416 35 0 0 chr3 6992479 6992875 -152606908 + MTA_Mm LTR MaLR 1 396 0 6 638 824 278 9 28 chr3 6992875 6993065 -152606718 + B3 SINE B2 30 216 0 6 638 303 28 0 0 chr3 6994432 6994468 -152605315 + (TA)n Simple_repeat Simple_repeat 1 36 0 6 638 431 317 0 48 chr3 6994488 6994677 -152605106 + GA-rich Low_complexity Low_complexity 1 180 0 6 638 299 25 0 24 chr3 6995032 6995073 -152604710 + (TTTTA)n Simple_repeat Simple_repeat 2 41 0 6 638 5208 119 48 1 chr3 6995073 6995872 -152603911 - Lx LINE L1 -11 6643 5808 6 638 3777 160 54 0 chr3 6995872 6996552 -152603231 + Lx LINE L1 5086 5802 -81 6 638 26 30 0 0 chr3 6997884 6997917 -152601866 + AT_rich Low_complexity Low_complexity 1 33 0 6 638 226 143 0 0 chr3 6998538 6998587 -152601196 + Lx2 LINE L1 6947 6995 -2 6 638 37 39 0 0 chr3 6999135 6999186 -152600597 + AT_rich Low_complexity Low_complexity 1 51 0 6 638 2806 36 0 114 chr3 7000207 7000619 -152599164 - RLTR10B2 LTR ERVK 0 365 1 1 638 1964 251 46 16 chr3 7001943 7002544 -152597239 + RMER1B Other Other 316 1052 -14 2 638 566 365 28 45 chr3 7002575 7002862 -152596921 - ORR1E LTR MaLR -75 284 3 3 638 1103 286 99 71 chr3 7002873 7003631 -152596152 + L1_Mur3 LINE L1 3089 3898 -1982 4 638 710 28 18 27 chr3 7003631 7003742 -152596041 + L1Md_F3 LINE L1 6472 6581 -3 5 638 1103 286 99 71 chr3 7003742 7003877 -152595906 + L1_Mur3 LINE L1 3899 4026 -1854 4 638 2316 137 3 5 chr3 7003877 7004250 -152595533 + Lx LINE L1 6272 6643 -11 6 638 1103 286 99 71 chr3 7004250 7004472 -152595311 + L1_Mur3 LINE L1 4027 4237 -1643 4 638 290 158 60 95 chr3 7004472 7004556 -152595227 + RLTR25B LTR ERVK 429 509 -519 7 638 683 75 11 0 chr3 7004498 7004591 -152595192 + B1_Mus2 SINE Alu 47 140 -7 8 638 636 273 74 26 chr3 7004614 7004728 -152595055 + L1_Mur3 LINE L1 4251 4362 -1518 4 638 279 79 0 0 chr3 7004728 7004766 -152595017 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 9 638 636 273 74 26 chr3 7004766 7004963 -152594820 + L1_Mur3 LINE L1 4363 4577 -1303 4 638 209 200 22 0 chr3 7005351 7005396 -152594387 + G-rich Low_complexity Low_complexity 2 47 0 1 638 2887 193 90 38 chr3 7005535 7006225 -152593558 + Lx2B LINE L1 6262 6987 -13 1 638 404 265 37 27 chr3 7006334 7006506 -152593277 + B3 SINE B2 16 193 -5 1 638 312 295 23 23 chr3 7009602 7009734 -152590049 + L1M2 LINE L1 3066 3197 -2946 1 638 393 22 0 0 chr3 7010424 7010470 -152589313 + (A)n Simple_repeat Simple_repeat 1 46 0 1 638 758 202 0 6 chr3 7011905 7012074 -152587709 + GA-rich Low_complexity Low_complexity 2 169 0 1 638 21 71 0 0 chr3 7012105 7012147 -152587636 + AT_rich Low_complexity Low_complexity 1 42 0 1 638 25 0 0 0 chr3 7012311 7012336 -152587447 + AT_rich Low_complexity Low_complexity 1 25 0 1 638 28 48 0 0 chr3 7012352 7012394 -152587389 + AT_rich Low_complexity Low_complexity 1 42 0 1 638 23 78 0 0 chr3 7012478 7012529 -152587254 + AT_rich Low_complexity Low_complexity 1 51 0 1 638 258 81 0 0 chr3 7012531 7012568 -152587215 + (CA)n Simple_repeat Simple_repeat 1 37 0 2 638 215 306 7 50 chr3 7014512 7014653 -152585130 + A-rich Low_complexity Low_complexity 5 139 0 2 638 28 0 0 0 chr3 7015290 7015318 -152584465 + AT_rich Low_complexity Low_complexity 1 28 0 2 638 25 31 0 0 chr3 7015941 7015973 -152583810 + AT_rich Low_complexity Low_complexity 1 32 0 2 638 204 120 19 74 chr3 7016244 7016298 -152583485 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 2 638 427 184 84 89 chr3 7016704 7016895 -152582888 + RMER17A LTR ERVK 221 410 -341 2 638 198 103 0 0 chr3 7017045 7017074 -152582709 + (TG)n Simple_repeat Simple_repeat 2 30 0 2 638 324 231 15 8 chr3 7017228 7017359 -152582424 + (TATG)n Simple_repeat Simple_repeat 4 135 0 2 638 877 276 100 15 chr3 7019879 7020386 -152579397 - L1MA8 LINE L1 -29 6262 5709 2 638 1100 33 20 0 chr3 7020975 7021125 -152578658 - L1Md_F2 LINE L1 0 6582 6430 2 638 488 335 0 35 chr3 7021922 7022092 -152577691 - RSINE1 SINE B4 -1 164 1 3 638 250 212 168 0 chr3 7024229 7024342 -152575441 + Lx9 LINE L1 7377 7508 -136 3 638 268 227 0 0 chr3 7024404 7024470 -152575313 - Lx7 LINE L1 -273 7423 7358 3 638 26 0 0 0 chr3 7024952 7024978 -152574805 + AT_rich Low_complexity Low_complexity 1 26 0 3 638 419 0 0 19 chr3 7025636 7025688 -152574095 + (TG)n Simple_repeat Simple_repeat 2 52 0 3 638 231 146 0 0 chr3 7027515 7027556 -152572227 + (TTCA)n Simple_repeat Simple_repeat 3 43 0 3 638 369 0 0 0 chr3 7028184 7028225 -152571558 + (TG)n Simple_repeat Simple_repeat 2 42 0 3 638 783 0 0 0 chr3 7028736 7028823 -152570960 + (TTC)n Simple_repeat Simple_repeat 1 87 0 3 638 23 33 0 0 chr3 7029925 7029955 -152569828 + AT_rich Low_complexity Low_complexity 1 30 0 3 638 1344 58 6 6 chr3 7032930 7033104 -152566679 + B2_Mm2 SINE B2 3 176 -19 3 638 464 346 0 11 chr3 7033490 7033674 -152566109 + Lx9 LINE L1 7177 7358 -286 4 638 213 39 0 0 chr3 7033761 7033787 -152565996 + (TG)n Simple_repeat Simple_repeat 2 27 0 4 638 1120 62 14 0 chr3 7033940 7034084 -152565699 + B1_Mm SINE Alu 1 146 -1 4 638 237 79 30 60 chr3 7034090 7034157 -152565626 + A-rich Low_complexity Low_complexity 2 66 0 4 638 238 292 15 0 chr3 7034197 7034262 -152565521 + MER33 DNA MER1_type 19 84 -240 4 638 317 47 62 0 chr3 7034285 7034349 -152565434 + (CAA)n Simple_repeat Simple_repeat 2 69 0 4 638 360 285 166 30 chr3 7034392 7034627 -152565156 + MER33 DNA MER1_type 19 285 -39 4 638 344 167 14 0 chr3 7035723 7035795 -152563988 + CT-rich Low_complexity Low_complexity 4 76 0 4 638 284 274 14 0 chr3 7036987 7037060 -152562723 - MER3 DNA MER1_type -74 135 62 4 638 482 165 10 0 chr3 7037780 7037883 -152561900 + (TCCA)n Simple_repeat Simple_repeat 1 104 0 4 638 4954 138 53 12 chr3 7038588 7039452 -152560331 - RMER17A2 LTR ERVK -6 900 1 4 638 254 292 0 14 chr3 7039471 7039544 -152560239 - B3A SINE B2 -121 77 6 5 638 21 0 0 0 chr3 7040403 7040424 -152559359 + AT_rich Low_complexity Low_complexity 1 21 0 5 638 21 0 0 0 chr3 7040459 7040480 -152559303 + AT_rich Low_complexity Low_complexity 1 21 0 5 638 184 329 37 25 chr3 7041447 7041528 -152558255 + MIRb SINE MIR 24 105 -163 5 638 414 0 0 0 chr3 7041869 7041915 -152557868 + (TG)n Simple_repeat Simple_repeat 2 47 0 5 638 198 0 0 0 chr3 7042329 7042351 -152557432 + (TC)n Simple_repeat Simple_repeat 1 22 0 5 638 522 31 0 0 chr3 7042351 7042414 -152557369 + (CA)n Simple_repeat Simple_repeat 1 64 0 5 638 547 304 65 40 chr3 7043512 7043957 -152555826 + L1MC2 LINE L1 5780 6235 -109 5 638 1248 147 22 0 chr3 7044966 7045197 -152554586 - Lx LINE L1 -2 6652 6417 5 638 27 29 0 0 chr3 7045718 7045752 -152554031 + AT_rich Low_complexity Low_complexity 1 34 0 5 638 255 125 0 0 chr3 7046133 7046173 -152553610 + (TTC)n Simple_repeat Simple_repeat 3 42 0 6 638 816 169 0 0 chr3 7046174 7046352 -152553431 + CT-rich Low_complexity Low_complexity 1 178 0 6 638 349 373 19 19 chr3 7046376 7046532 -152553251 - RSINE1 SINE B4 -8 157 2 6 638 1840 36 5 0 chr3 7046604 7046828 -152552955 - L1Md_F3 LINE L1 -460 6124 5900 6 638 1273 250 14 18 chr3 7046861 7047142 -152552641 - Lx6 LINE L1 -175 7285 7006 6 638 22 0 0 0 chr3 7047279 7047301 -152552482 + AT_rich Low_complexity Low_complexity 1 22 0 6 638 4020 54 78 17 chr3 7047377 7047905 -152551878 - LTRIS2 LTR ERV1 0 564 5 6 638 29 28 0 0 chr3 7047968 7048004 -152551779 + AT_rich Low_complexity Low_complexity 1 36 0 6 638 4093 241 87 29 chr3 7048022 7049879 -152549904 - Lx6 LINE L1 -22 7028 4979 6 638 2431 97 152 2 chr3 7049879 7050292 -152549491 + IAPLTR2_Mm LTR ERVK 1 475 0 6 638 3128 89 51 32 chr3 7050332 7051128 -152548655 + IAPEz-int LTR ERVK 10 662 -5819 6 638 2228 68 0 0 chr3 7051128 7051406 -152548377 + IAPEz-int LTR ERVK 1359 1636 -4845 6 638 6074 47 4 7 chr3 7051405 7052153 -152547630 + IAPEz-int LTR ERVK 5736 6481 0 6 638 2264 96 132 0 chr3 7052153 7052516 -152547267 + IAPLTR2_Mm LTR ERVK 1 411 0 6 638 263 105 0 0 chr3 7052518 7052556 -152547227 + IAPEz-int LTR ERVK 3 40 -1947 6 638 3009 68 22 23 chr3 7052556 7053215 -152546568 + IAPEz-int LTR ERVK 18 599 -5882 6 638 358 308 41 8 chr3 7053637 7053758 -152546025 + MLT1A LTR MaLR 1 125 -249 7 638 1491 312 66 16 chr3 7054554 7055135 -152544648 + Lx5 LINE L1 6455 7032 -18 7 638 486 0 0 0 chr3 7055219 7055273 -152544510 + (GA)n Simple_repeat Simple_repeat 1 54 0 7 638 672 295 60 0 chr3 7055564 7055764 -152544019 + B3 SINE B2 1 212 -4 7 638 494 30 30 0 chr3 7056189 7056256 -152543527 + (TTTTG)n Simple_repeat Simple_repeat 1 69 0 7 638 1016 104 0 0 chr3 7056256 7056390 -152543393 - B1_Mus1 SINE Alu -13 135 2 7 638 1060 110 0 0 chr3 7056740 7056885 -152542898 + B1_Mus2 SINE Alu 3 147 0 7 638 336 355 52 7 chr3 7057767 7057903 -152541880 - L2 LINE L2 -611 2808 2667 7 638 263 308 68 34 chr3 7058121 7058269 -152541514 - MER77 LTR ERVL -48 559 407 7 638 3576 129 17 9 chr3 7058957 7059535 -152540248 - Lx LINE L1 -409 6245 5663 7 638 588 173 0 0 chr3 7059536 7059640 -152540143 + Lx LINE L1 5546 5649 -234 7 638 341 174 0 0 chr3 7060253 7060322 -152539461 + Lx2B LINE L1 6927 6995 -5 8 638 387 0 0 0 chr3 7060413 7060456 -152539327 + (TG)n Simple_repeat Simple_repeat 2 44 0 8 638 304 317 0 24 chr3 7060458 7060542 -152539241 - B4A SINE B4 -13 279 198 8 638 339 292 32 83 chr3 7060686 7060843 -152538940 - RMER15 LTR ERVL -153 422 274 8 638 1594 148 89 129 chr3 7060929 7061424 -152538359 + IAPLTR2_Mm LTR ERVK 1 475 0 8 638 192 40 0 0 chr3 7061506 7061531 -152538252 + (TTG)n Simple_repeat Simple_repeat 2 26 0 8 638 5541 185 17 141 chr3 7061535 7063645 -152536138 - Lx LINE L1 0 6654 4652 8 638 1290 188 94 34 chr3 7063645 7063942 -152535841 - RLTR46 LTR ERVK -5 315 1 8 638 5541 185 17 141 chr3 7063942 7064436 -152535347 - Lx LINE L1 0 4651 4181 8 638 284 0 28 0 chr3 7064721 7064757 -152535026 + (CAAAA)n Simple_repeat Simple_repeat 5 41 0 8 638 300 339 46 0 chr3 7064961 7065070 -152534713 - L1MC4 LINE L1 -529 7353 7240 8 638 349 322 67 28 chr3 7065131 7065310 -152534473 - L1MC4 LINE L1 -1008 7034 6849 8 638 3077 45 0 0 chr3 7066270 7066627 -152533156 - IAPEY2_LTR LTR ERVK 0 357 1 9 638 3249 254 37 28 chr3 7066959 7068776 -152531007 + Lx6 LINE L1 5218 7032 -18 9 638 21 0 0 0 chr3 7068856 7068877 -152530906 + AT_rich Low_complexity Low_complexity 1 21 0 9 638 5838 19 1 0 chr3 7069690 7070359 -152529424 - L1Md_A LINE L1 -2 6580 5911 9 638 516 250 49 62 chr3 7071053 7071085 -152528698 + ID_B1 SINE B4 57 140 -84 9 638 825 108 69 0 chr3 7071085 7071144 -152528639 + B1_Mus2 SINE Alu 1 59 -88 9 638 6628 51 0 1 chr3 7071144 7071965 -152527818 - L1Md_F2 LINE L1 -2 6580 5761 9 638 516 250 49 62 chr3 7071965 7072035 -152527748 + ID_B1 SINE B4 141 215 -9 9 638 348 24 0 0 chr3 7072047 7072088 -152527695 + (TG)n Simple_repeat Simple_repeat 2 42 0 9 638 285 268 32 25 chr3 7073985 7074142 -152525641 + L1MC3 LINE L1 7371 7528 -257 9 638 313 312 94 19 chr3 7074409 7074569 -152525214 + L1MC3 LINE L1 7612 7783 -2 9 638 1655 79 4 4 chr3 7075037 7075265 -152524518 - MTB_Mm LTR MaLR 0 407 180 9 638 6965 106 3 33 chr3 7075271 7076432 -152523351 - Lx LINE L1 0 6654 5528 1 638 311 154 0 0 chr3 7076436 7076488 -152523295 - Lx LINE L1 -517 5366 5315 1 79 187 331 84 78 chr3 7077790 7077944 -152521839 + MIRb SINE MIR 3 157 -111 1 639 217 274 47 31 chr3 7077910 7077974 -152521809 + MIRm SINE MIR 125 189 -87 1 639 356 303 75 31 chr3 7078942 7079102 -152520681 + MIR3 SINE MIR 40 206 -2 1 639 60 59 0 0 chr3 7079656 7079758 -152520025 + AT_rich Low_complexity Low_complexity 1 102 0 1 639 1243 305 70 52 chr3 7080165 7081110 -152518673 + L1_Rod LINE L1 1497 2458 -3389 1 639 1577 164 77 62 chr3 7081185 7081509 -152518274 + ORR1A4 LTR MaLR 1 329 0 1 639 2511 182 45 21 chr3 7081587 7082099 -152517684 - RLTR11A2 LTR ERVK -3 524 1 1 639 207 0 0 0 chr3 7082197 7082220 -152517563 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 1 639 1054 86 0 14 chr3 7082659 7082801 -152516982 + B1_Mm SINE Alu 3 142 -5 1 639 363 130 0 0 chr3 7082809 7082886 -152516897 + (A)n Simple_repeat Simple_repeat 1 77 0 1 639 33758 36 0 0 chr3 7082889 7088339 -152511444 + L1Md_T LINE L1 43 5589 -297 1 639 8992 7 0 0 chr3 7088339 7089486 -152510297 + L1Md_T LINE L1 5590 6585 0 1 639 6776 161 47 23 chr3 7089504 7091609 -152508174 + L1VL4 LINE L1 323 2374 -1443 1 639 33870 45 0 3 chr3 7091607 7096846 -152502937 + L1Md_T LINE L1 271 5589 -297 1 639 8357 37 0 0 chr3 7096846 7097842 -152501941 + L1Md_T LINE L1 5590 6585 0 1 639 2160 121 0 0 chr3 7097846 7098194 -152501589 + L1VL4 LINE L1 2356 2703 -1114 1 639 318 145 68 51 chr3 7098201 7098223 -152501560 + ID_B1 SINE B4 75 123 -101 1 639 347 111 0 18 chr3 7098223 7098278 -152501505 + B1_Mus2 SINE Alu 2 55 -92 1 639 318 145 68 51 chr3 7098278 7098290 -152501493 + ID_B1 SINE B4 124 154 -70 1 639 10658 137 9 8 chr3 7098290 7099420 -152500363 + L1_Mus3 LINE L1 4060 5196 -687 1 639 3571 75 6 28 chr3 7099420 7099925 -152499858 - L1Md_F2 LINE L1 -3 6579 6086 1 639 10658 106 15 4 chr3 7099925 7101359 -152498424 + L1_Mus3 LINE L1 5197 6636 -2 1 639 24 0 0 0 chr3 7101366 7101390 -152498393 + AT_rich Low_complexity Low_complexity 1 24 0 1 639 2776 124 8 3 chr3 7101871 7102352 -152497431 + L1_Mur2 LINE L1 5073 5596 -716 1 639 212 0 36 0 chr3 7106380 7106408 -152493375 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 1 639 3077 15 0 0 chr3 7106712 7107054 -152492729 - ORR1A0 LTR MaLR -4 342 1 1 639 13625 51 25 1 chr3 7107054 7108804 -152490979 - ORR1A0-int LTR MaLR 0 1792 1 1 639 2896 35 15 0 chr3 7108804 7109145 -152490638 - ORR1A0 LTR MaLR 0 346 1 1 639 1178 48 0 7 chr3 7110875 7111021 -152488762 - B1_Mm SINE Alu -1 146 2 1 639 6036 164 53 16 chr3 7114061 7115277 -152484506 + Lx4A LINE L1 5504 6766 -292 1 639 721 299 9 4 chr3 7115311 7115543 -152484240 + Lx8 LINE L1 6412 6644 -829 1 639 3204 221 26 51 chr3 7115616 7116356 -152483427 + L1_Mur2 LINE L1 451 1173 -5913 1 639 6247 75 8 2 chr3 7116356 7117159 -152482624 + L1_Mus1 LINE L1 5761 6567 0 1 639 4063 151 35 60 chr3 7117159 7117675 -152482108 + L1_Mur2 LINE L1 1174 1703 -4174 1 639 1107 108 0 0 chr3 7117675 7117823 -152481960 + B1_Mus1 SINE Alu 1 148 0 1 639 4063 146 35 60 chr3 7117823 7118303 -152481480 + L1_Mur2 LINE L1 1704 2139 -3738 1 639 4005 131 9 65 chr3 7118346 7119135 -152480648 + RMER17D2 LTR ERVK 65 809 0 1 639 1023 222 5 14 chr3 7119434 7119653 -152480130 + MERVK26-int LTR ERVK 67 283 -6636 1 639 4788 142 52 38 chr3 7119653 7121044 -152478739 + Lx LINE L1 5233 6654 0 1 639 201 39 0 0 chr3 7121050 7121076 -152478707 + (CAA)n Simple_repeat Simple_repeat 2 27 0 1 639 4311 214 45 6 chr3 7121078 7122030 -152477753 + MERVK26-int LTR ERVK 294 1282 -5637 1 639 5371 151 71 4 chr3 7122030 7123095 -152476688 + MERVK26-int LTR ERVK 4665 5800 -1119 1 639 369 189 0 0 chr3 7123091 7123165 -152476618 + MERVK26-int LTR ERVK 5951 6024 -895 1 639 4877 110 36 28 chr3 7123196 7123972 -152475811 - RLTR13C2 LTR ERVK -26 782 1 1 639 841 55 0 9 chr3 7124043 7124153 -152475630 - RLTR1B LTR ERV1 0 512 404 1 639 1806 120 87 38 chr3 7124151 7124497 -152475286 + RLTR9E LTR ERVK 47 409 0 1 639 20311 100 16 8 chr3 7124497 7128681 -152471102 + Lx3_Mus LINE L1 2762 6979 -30 1 639 816 271 75 39 chr3 7128682 7129181 -152470602 - RLTR18B LTR ERVK -152 464 1 1 639 256 242 20 20 chr3 7129883 7129984 -152469799 + (TATATG)n Simple_repeat Simple_repeat 2 102 0 1 639 471 259 44 33 chr3 7130699 7130879 -152468904 + B3A SINE B2 2 183 -15 1 639 482 251 16 50 chr3 7131313 7131489 -152468294 + B3 SINE B2 29 190 -5 1 639 607 313 93 27 chr3 7131584 7131967 -152467816 + Lx5 LINE L1 6515 6824 -226 1 639 289 0 49 0 chr3 7131968 7132009 -152467774 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 1 639 1137 174 26 14 chr3 7132023 7132321 -152467462 - Lx LINE L1 -6 6648 6317 1 639 357 240 85 0 chr3 7132314 7132443 -152467340 + Lx5 LINE L1 7265 7404 -56 1 639 821 52 17 0 chr3 7132585 7132735 -152467048 - L1Md_F3 LINE L1 0 6584 6450 1 639 202 284 15 15 chr3 7133122 7133190 -152466593 + (TG)n Simple_repeat Simple_repeat 1 68 0 1 639 331 343 49 14 chr3 7133241 7133383 -152466400 - B4A SINE B4 -144 148 2 1 639 1856 243 22 14 chr3 7133415 7133829 -152465954 - MTC LTR MaLR -2 419 3 1 639 2876 242 78 29 chr3 7133848 7134683 -152465100 - MTC-int LTR MaLR -3 1255 380 1 639 2736 230 35 50 chr3 7134689 7135756 -152464027 - RMER1B Other Other -11 1055 43 1 639 1082 225 52 24 chr3 7135758 7136049 -152463734 - Lx6 LINE L1 -420 7040 6742 1 639 796 184 0 11 chr3 7136066 7136170 -152463613 + polypyrimidine Low_complexity Low_complexity 77 179 0 1 639 1041 150 0 0 chr3 7136170 7136350 -152463433 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 1 639 796 184 0 11 chr3 7136350 7136426 -152463357 + polypyrimidine Low_complexity Low_complexity 2 76 0 1 639 1074 140 0 0 chr3 7136426 7136605 -152463178 + (TTCC)n Simple_repeat Simple_repeat 2 180 0 1 639 3564 226 63 12 chr3 7136610 7138178 -152461605 - Lx6 LINE L1 -712 6748 5094 1 639 2242 77 13 0 chr3 7138179 7138478 -152461305 - L1_Mus3 LINE L1 -6 6632 6330 1 639 458 272 48 8 chr3 7138872 7138998 -152460785 - ETnERV2-int LTR ERVK -206 7200 7070 1 639 539 280 62 53 chr3 7139013 7139368 -152460415 - RLTR10D LTR ERVK 0 359 2 1 639 4994 89 19 0 chr3 7139369 7140097 -152459686 - L1_Mus3 LINE L1 -310 6328 5587 1 639 1329 229 52 103 chr3 7140102 7140895 -152458888 - Lx6 LINE L1 -918 4959 4277 1 639 290 169 0 0 chr3 7140886 7140945 -152458838 - Lx6 LINE L1 -2779 3101 3043 1 639 713 202 175 5 chr3 7140945 7141134 -152458649 - URR1A DNA MER1_type 0 226 6 1 639 1917 182 24 21 chr3 7141143 7141608 -152458175 - Lx6 LINE L1 -2834 3046 2581 1 639 835 218 63 127 chr3 7141617 7141948 -152457835 - RLTRETN_Mm LTR ERVK -1 321 12 1 639 443 122 23 68 chr3 7141952 7142040 -152457743 - ETnERV2-int LTR ERVK 0 7406 7323 1 639 536 230 239 22 chr3 7142040 7142400 -152457383 - RLTR13D6 LTR ERVK -371 531 93 1 639 4552 125 9 0 chr3 7142401 7143047 -152456736 - ETnERV2-int LTR ERVK -263 7143 6492 1 639 5817 124 13 81 chr3 7143042 7144213 -152455570 - MMETn-int LTR ERVK -3744 1100 10 1 639 918 224 20 70 chr3 7144223 7144521 -152455262 - RLTRETN_Mm LTR ERVK 0 322 40 1 639 2968 193 27 99 chr3 7144567 7144858 -152454925 - Lx6 LINE L1 -3279 2601 2351 1 639 261 0 0 0 chr3 7144858 7144887 -152454896 + (TG)n Simple_repeat Simple_repeat 2 30 0 1 639 2968 193 27 99 chr3 7144887 7145481 -152454302 - Lx6 LINE L1 -3530 2350 1780 1 639 1071 309 137 15 chr3 7145502 7146179 -152453604 + L1_Mur3 LINE L1 49 685 -7027 1 639 27548 125 15 8 chr3 7146172 7149076 -152450707 + L1_Mus3 LINE L1 245 3178 -2705 1 639 314 23 0 23 chr3 7149076 7149120 -152450663 + (TTG)n Simple_repeat Simple_repeat 2 44 0 1 639 27548 118 16 2 chr3 7149120 7152528 -152447255 + L1_Mus3 LINE L1 3179 6626 -12 1 639 352 170 67 105 chr3 7152553 7152658 -152447125 + L1_Mur2 LINE L1 4652 4752 -1125 1 639 207 139 0 0 chr3 7152658 7152694 -152447089 + (A)n Simple_repeat Simple_repeat 1 36 0 1 639 513 223 86 0 chr3 7152699 7152838 -152446945 + L1_Mur3 LINE L1 672 822 -6890 1 639 396 307 10 10 chr3 7152918 7153020 -152446763 + B4A SINE B4 2 103 -189 1 639 573 192 33 0 chr3 7153182 7153302 -152446481 - RLTR28 LTR ERVL 0 524 401 1 639 3042 197 45 19 chr3 7153293 7153915 -152445868 + RLTR26 LTR ERVK 5 642 0 1 639 1859 206 45 8 chr3 7153915 7153952 -152445831 - RLTR28 LTR ERVL -112 412 367 1 639 773 0 25 33 chr3 7153952 7154073 -152445710 + (GAGAA)n Simple_repeat Simple_repeat 5 124 0 1 639 1859 206 45 8 chr3 7154073 7154432 -152445351 - RLTR28 LTR ERVL -158 366 2 1 639 421 149 22 22 chr3 7154435 7154524 -152445259 - URR1B DNA MER1_type -1 224 136 1 639 225 83 0 0 chr3 7154671 7154707 -152445076 + (CA)n Simple_repeat Simple_repeat 2 37 0 1 639 921 192 68 50 chr3 7155145 7155468 -152444315 - RMER17C LTR ERVK -2 408 80 1 639 494 285 137 8 chr3 7155531 7155772 -152444011 + RLTR10A LTR ERVK 140 411 0 1 639 337 198 54 54 chr3 7155788 7155900 -152443883 + RLTR10-int LTR ERVK 318 429 -1558 1 639 780 262 78 60 chr3 7156052 7156499 -152443284 + RLTR45-int LTR ERVK 2218 2672 -3870 1 639 1528 322 49 47 chr3 7156500 7158405 -152441378 + RLTR45-int LTR ERVK 3208 5080 -1462 1 639 1655 225 11 23 chr3 7158523 7159005 -152440778 + RLTR45-int LTR ERVK 6590 7042 -202 1 639 427 278 207 19 chr3 7159019 7159264 -152440519 + RLTR10A LTR ERVK 104 410 -1 1 639 529 153 0 51 chr3 7159264 7159402 -152440381 + GA-rich Low_complexity Low_complexity 1 131 0 1 639 378 300 11 49 chr3 7159402 7159465 -152440318 - RMER17C LTR ERVK -157 253 189 1 639 1037 136 6 0 chr3 7159465 7159642 -152440141 + (GA)n Simple_repeat Simple_repeat 1 178 0 1 639 378 300 11 49 chr3 7159642 7159841 -152439942 - RMER17C LTR ERVK -222 188 2 1 639 288 338 28 14 chr3 7162130 7162271 -152437512 - B1F2 SINE Alu -2 147 5 1 639 725 270 11 0 chr3 7162406 7162584 -152437199 + B3A SINE B2 1 180 -18 1 639 2852 57 5 0 chr3 7163729 7164115 -152435668 + L1Md_F2 LINE L1 6165 6552 -30 1 639 983 260 115 17 chr3 7164445 7164793 -152434990 + ORR1C2 LTR MaLR 1 382 -2 1 639 235 184 20 0 chr3 7165015 7165064 -152434719 + (TA)n Simple_repeat Simple_repeat 2 51 0 1 639 4142 155 97 32 chr3 7166391 7167238 -152432545 - RLTR13D6 LTR ERVK 0 902 1 1 639 238 26 25 25 chr3 7167391 7167431 -152432352 + (TTTTG)n Simple_repeat Simple_repeat 1 40 0 1 639 368 276 73 0 chr3 7167432 7167555 -152432228 - B1F SINE Alu -16 133 2 1 639 1170 236 51 133 chr3 7167840 7168471 -152431312 - Lx7 LINE L1 0 7696 7118 1 639 736 231 136 36 chr3 7168472 7168723 -152431060 - Lx6 LINE L1 -560 6900 6625 1 639 3276 182 48 12 chr3 7168794 7170102 -152429681 - L1_Mur3 LINE L1 -3943 1937 577 1 639 442 289 92 7 chr3 7170607 7170760 -152429023 - MTE-int LTR MaLR -1388 192 27 1 639 3783 78 4 0 chr3 7170971 7171496 -152428287 + L1_Mus3 LINE L1 5850 6376 -262 1 639 2390 81 51 0 chr3 7171497 7171872 -152427911 + L1_Mus3 LINE L1 6243 6653 -1 1 639 805 165 6 6 chr3 7171874 7172039 -152427744 + GA-rich Low_complexity Low_complexity 1 165 0 1 639 468 188 0 38 chr3 7172394 7172499 -152427284 - RMER20B LTR ERVK 0 627 527 1 639 635 266 6 31 chr3 7172546 7172709 -152427074 + RMER20B LTR ERVK 461 619 -8 1 639 726 270 32 50 chr3 7172884 7173014 -152426769 + MERVK26-int LTR ERVK 182 316 -6603 1 639 2627 43 65 0 chr3 7173014 7173339 -152426444 + ORR1A1 LTR MaLR 1 346 0 1 639 726 270 32 50 chr3 7173339 7173485 -152426298 + MERVK26-int LTR ERVK 317 453 -6466 1 639 2366 235 37 73 chr3 7173959 7174361 -152425422 + RMER20B LTR ERVK 1 380 -247 1 639 2357 109 23 3 chr3 7174361 7174711 -152425072 - IAPEY2_LTR LTR ERVK 0 357 1 1 639 2366 235 37 73 chr3 7174711 7174928 -152424855 + RMER20B LTR ERVK 381 598 -29 1 639 249 325 13 25 chr3 7174933 7175012 -152424771 + RMER20B LTR ERVK 528 605 -22 2 639 2175 209 122 15 chr3 7175197 7175737 -152424046 - RMER1B Other Other 0 1066 469 2 639 243 214 190 35 chr3 7175875 7175933 -152423850 - B1_Mur4 SINE Alu -83 67 1 2 639 236 292 69 77 chr3 7175933 7176006 -152423777 - MT2B LTR ERVL -436 165 94 2 639 236 338 44 0 chr3 7175958 7176026 -152423757 - B1_Mur2 SINE Alu -13 136 66 2 639 328 263 86 43 chr3 7176430 7176569 -152423214 + RLTR23 LTR ERV1 286 430 0 2 639 455 153 11 96 chr3 7177611 7177705 -152422078 + RMER6B LTR ERVK 4 89 -372 2 639 36289 14 1 7 chr3 7177808 7182989 -152416794 + L1Md_A LINE L1 445 5586 -297 2 639 8676 20 1 0 chr3 7182989 7183984 -152415799 + L1Md_A LINE L1 5587 6582 0 2 639 689 221 96 10 chr3 7184015 7184316 -152415467 + L1M3 LINE L1 4374 4700 -1440 2 639 363 69 52 0 chr3 7184316 7184374 -152415409 + RMER6-int LTR ERVK 8 68 -3109 2 639 884 165 243 20 chr3 7184376 7184663 -152415120 + RLTR15 LTR ERVK 3 353 -6 2 639 1149 184 62 8 chr3 7184665 7184922 -152414861 + RMER6-int LTR ERVK 59 329 -2848 2 639 572 178 30 30 chr3 7184922 7185055 -152414728 - Lx LINE L1 -1 6653 6521 2 639 1299 120 5 50 chr3 7185055 7185275 -152414508 - Lx LINE L1 -290 6364 6155 2 639 4352 157 35 7 chr3 7185273 7186109 -152413674 + L1_Mur2 LINE L1 4062 4920 -957 2 639 702 0 0 0 chr3 7186114 7186192 -152413591 + (TTC)n Simple_repeat Simple_repeat 3 80 0 2 639 13330 76 14 111 chr3 7186415 7189606 -152410177 - L1Md_F2 LINE L1 -5 6577 3688 2 639 189 0 0 0 chr3 7189606 7189627 -152410156 + (T)n Simple_repeat Simple_repeat 1 21 0 2 639 323 267 179 22 chr3 7189673 7189807 -152409976 - RSINE1 SINE B4 -6 159 5 2 639 395 310 9 0 chr3 7189935 7190051 -152409732 + C-rich Low_complexity Low_complexity 5 121 0 2 639 207 293 0 0 chr3 7190314 7190372 -152409411 + CT-rich Low_complexity Low_complexity 4 61 0 2 639 246 323 36 36 chr3 7191693 7191831 -152407952 + L2 LINE L2 2525 2662 -757 2 639 536 152 0 10 chr3 7192449 7192549 -152407234 + C-rich Low_complexity Low_complexity 3 101 0 2 639 510 17 0 0 chr3 7192537 7192596 -152407187 + (TTCC)n Simple_repeat Simple_repeat 2 60 0 2 639 872 104 8 0 chr3 7192596 7192730 -152407053 + (TCC)n Simple_repeat Simple_repeat 3 137 0 2 639 38965 15 4 0 chr3 7193232 7199963 -152399820 - L1Md_A LINE L1 -2 6580 1 2 639 13129 98 118 9 chr3 7199964 7203107 -152396676 - L1Md_F LINE L1 -2183 3700 214 2 639 222 164 143 32 chr3 7203113 7203176 -152396607 - MIRc SINE MIR -9 259 190 2 639 3305 80 0 8 chr3 7203187 7203666 -152396117 + L1_Mus1 LINE L1 5693 6167 -400 2 639 4840 162 12 2 chr3 7203666 7204557 -152395226 + L1_Mm LINE L1 4924 5823 -60 2 639 1314 73 0 0 chr3 7204638 7204844 -152394939 + (TTC)n Simple_repeat Simple_repeat 1 206 0 2 639 727 122 15 0 chr3 7204844 7204975 -152394808 + (TC)n Simple_repeat Simple_repeat 2 134 0 2 639 418 305 152 27 chr3 7205122 7205378 -152394405 + MLT1A LTR MaLR 87 374 0 2 639 31 26 0 0 chr3 7205668 7205706 -152394077 + AT_rich Low_complexity Low_complexity 1 38 0 2 639 333 0 0 0 chr3 7206067 7206104 -152393679 + (TAAA)n Simple_repeat Simple_repeat 2 38 0 2 639 897 52 0 0 chr3 7206702 7206817 -152392966 + (GA)n Simple_repeat Simple_repeat 2 116 0 2 79 3084 298 41 26 chr3 7208129 7209341 -152390442 - Lx9 LINE L1 -228 7416 6187 2 640 236 367 54 54 chr3 7211191 7211338 -152388445 - L2a LINE L2 -221 3205 3059 2 640 375 260 99 52 chr3 7211361 7211408 -152388375 + MER97c DNA MER1_type? 20 62 -1028 2 640 432 0 0 0 chr3 7211408 7211456 -152388327 + (TG)n Simple_repeat Simple_repeat 2 49 0 2 640 375 260 99 52 chr3 7211456 7211599 -152388184 + MER97c DNA MER1_type? 63 218 -872 2 640 277 314 8 33 chr3 7212123 7212245 -152387538 - RLTR15 LTR ERVK -239 120 2 2 640 379 380 61 17 chr3 7212322 7212552 -152387231 - LTR53 LTR ERVL -86 433 194 2 640 190 75 0 70 chr3 7212594 7212637 -152387146 + (TTTG)n Simple_repeat Simple_repeat 1 40 0 2 640 1439 258 47 17 chr3 7212652 7213055 -152386728 - Lx6 LINE L1 -40 7420 7006 2 640 631 216 7 0 chr3 7213178 7213317 -152386466 - URR1A DNA MER1_type 0 226 87 2 640 298 267 0 41 chr3 7213319 7213440 -152386343 - Lx5 LINE L1 -27 7433 7318 2 640 2398 50 66 0 chr3 7213468 7213785 -152385998 + ORR1A1 LTR MaLR 1 338 -8 2 640 12940 79 8 2 chr3 7213789 7215571 -152384212 + ORR1A1-int LTR MaLR 1 1792 0 2 640 2552 55 65 0 chr3 7215571 7215896 -152383887 + ORR1A1 LTR MaLR 1 346 0 2 640 1865 137 79 164 chr3 7215906 7216376 -152383407 - RLTR23 LTR ERV1 0 430 1 2 640 334 281 20 54 chr3 7216380 7216527 -152383256 - Lx5 LINE L1 -181 7279 7138 2 640 476 298 3 59 chr3 7216533 7216845 -152382938 - Lx5 LINE L1 -615 6845 6343 2 640 1447 93 0 0 chr3 7216845 7217038 -152382745 - MTB LTR MaLR -205 195 3 2 640 1060 183 28 16 chr3 7217046 7217296 -152382487 - L1_Mur3 LINE L1 -583 5294 5042 2 640 9558 14 1 0 chr3 7217318 7218616 -152381167 + L1Md_T LINE L1 1 1142 -5380 2 640 14064 19 0 0 chr3 7221334 7222966 -152376817 + L1Md_T LINE L1 3958 5589 -297 2 640 8964 6 0 0 chr3 7222966 7223962 -152375821 + L1Md_T LINE L1 5590 6585 0 2 640 267 244 75 43 chr3 7223965 7224059 -152375724 + L1MA4 LINE L1 6033 6129 -171 2 640 201 74 0 0 chr3 7224129 7224156 -152375627 + (A)n Simple_repeat Simple_repeat 1 27 0 2 640 2140 186 198 26 chr3 7224160 7224426 -152375357 - RMER6C LTR ERVK -10 680 369 2 640 186 143 0 0 chr3 7224426 7224461 -152375322 + (AACTG)n Simple_repeat Simple_repeat 1 35 0 2 640 2140 186 198 26 chr3 7224461 7224774 -152375009 - RMER6C LTR ERVK -322 368 2 2 640 7671 205 51 7 chr3 7224774 7226547 -152373236 - L1_Mur3 LINE L1 -834 5046 3196 2 640 4100 172 42 13 chr3 7226553 7227313 -152372470 - Lx LINE L1 -108 6546 5765 2 640 667 157 0 0 chr3 7227314 7227429 -152372354 - Lx LINE L1 -432 5451 5337 2 640 262 186 51 0 chr3 7227434 7227493 -152372290 + U2 snRNA snRNA 2 63 -125 2 640 401 160 40 13 chr3 7227566 7227642 -152372141 - HAL1-3A_ME LINE L1 -805 2053 1976 2 640 315 49 0 0 chr3 7227679 7227720 -152372063 + (TCTCTG)n Simple_repeat Simple_repeat 2 42 0 2 640 360 0 0 0 chr3 7227723 7227763 -152372020 + (TG)n Simple_repeat Simple_repeat 1 40 0 2 640 1196 279 58 3 chr3 7227763 7228163 -152371620 - Lx6 LINE L1 -584 6876 6240 2 640 187 295 38 25 chr3 7228357 7228437 -152371346 - L2 LINE L2 -756 2663 2583 2 640 321 312 139 10 chr3 7228529 7228723 -152371060 + L1MC4a LINE L1 5779 5997 -1885 2 640 1511 240 67 5 chr3 7228889 7229307 -152370476 + Lx9 LINE L1 7195 7638 -6 2 640 525 32 0 0 chr3 7229320 7229383 -152370400 + (TC)n Simple_repeat Simple_repeat 1 63 0 2 640 397 316 104 13 chr3 7229390 7229544 -152370239 - MTE2a LTR MaLR -14 365 198 2 640 294 200 44 11 chr3 7229542 7229622 -152370161 - MTE2a LTR MaLR -333 88 3 2 640 1330 303 17 36 chr3 7229763 7230177 -152369606 + Tigger7 DNA MER2_type 6 411 -2080 2 640 216 273 39 0 chr3 7230423 7230500 -152369283 + (CATATA)n Simple_repeat Simple_repeat 1 80 0 2 640 283 351 65 6 chr3 7230510 7230679 -152369104 + Tigger7 DNA MER2_type 393 571 -1920 2 640 2130 294 96 26 chr3 7230700 7231572 -152368211 - Lx9 LINE L1 -387 7257 6325 2 640 563 222 29 36 chr3 7231575 7231715 -152368068 - RLTR25B LTR ERVK 0 1028 890 2 640 1961 189 102 5 chr3 7231711 7232132 -152367651 - RLTR25B LTR ERVK -253 775 314 2 640 363 184 0 0 chr3 7232232 7232319 -152367464 - L1_Mus3 LINE L1 0 6638 6552 2 640 760 139 0 0 chr3 7232327 7232456 -152367327 + L1_Mur1 LINE L1 4986 5114 -772 2 640 368 74 23 0 chr3 7232456 7232520 -152367263 + B1_Mus2 SINE Alu 54 147 0 2 640 3917 164 2 0 chr3 7232536 7233198 -152366585 + L1_Mm LINE L1 5093 5730 -153 2 640 396 214 30 20 chr3 7233198 7233298 -152366485 + RCHARR1 DNA MER1_type 379 479 -495 2 640 4907 161 73 1 chr3 7233308 7234239 -152365544 - Lx3B LINE L1 0 6973 5976 2 640 261 234 0 38 chr3 7234247 7234327 -152365456 + L1_Rod LINE L1 5152 5228 -619 2 640 590 357 52 0 chr3 7234427 7234640 -152365143 + ID_B1 SINE B4 1 224 0 2 640 29 47 0 0 chr3 7234733 7234776 -152365007 + AT_rich Low_complexity Low_complexity 1 43 0 2 640 504 0 0 0 chr3 7235142 7235198 -152364585 + (TA)n Simple_repeat Simple_repeat 2 57 0 2 640 1511 86 115 8 chr3 7235244 7235479 -152364304 - L1Md_F2 LINE L1 -2 6580 6321 2 640 556 150 0 17 chr3 7235724 7235839 -152363944 + CT-rich Low_complexity Low_complexity 3 115 0 2 640 347 318 97 17 chr3 7236081 7236257 -152363526 - L1M4 LINE L1 -6277 265 76 2 640 4440 89 33 3 chr3 7236272 7236906 -152362877 + L1_Mus3 LINE L1 5986 6638 0 2 640 186 333 84 24 chr3 7237196 7237279 -152362504 - L3 LINE CR1 -1638 2851 2764 2 640 255 230 12 108 chr3 7237324 7237407 -152362376 + MLT1A1 LTR MaLR 1 75 -333 2 640 246 32 0 0 chr3 7237841 7237872 -152361911 + (CA)n Simple_repeat Simple_repeat 2 32 0 2 640 23 0 0 0 chr3 7237872 7237895 -152361888 + AT_rich Low_complexity Low_complexity 1 23 0 2 640 24 0 0 0 chr3 7239700 7239724 -152360059 + AT_rich Low_complexity Low_complexity 1 24 0 2 640 185 315 0 0 chr3 7239810 7239864 -152359919 - MIR SINE MIR -95 167 114 2 640 569 320 32 103 chr3 7241620 7241844 -152357939 - MLT1B LTR MaLR 0 390 156 2 640 294 73 0 0 chr3 7241853 7241894 -152357889 + (TG)n Simple_repeat Simple_repeat 2 42 0 2 640 230 278 107 57 chr3 7243045 7243163 -152356620 + B3 SINE B2 2 148 -50 2 640 405 0 0 0 chr3 7243163 7243208 -152356575 + (CA)n Simple_repeat Simple_repeat 2 46 0 2 640 218 276 140 84 chr3 7243208 7243234 -152356549 + B3A SINE B2 149 176 -22 2 640 3196 36 8 0 chr3 7243426 7243811 -152355972 - RLTR10 LTR ERVK -2 388 1 2 640 182 116 23 0 chr3 7244176 7244219 -152355564 + (TTTTTG)n Simple_repeat Simple_repeat 4 47 0 2 640 354 305 40 125 chr3 7247178 7247354 -152352429 + RSINE1 SINE B4 2 162 -3 2 640 28 29 0 0 chr3 7247364 7247399 -152352384 + AT_rich Low_complexity Low_complexity 1 35 0 2 640 813 66 25 0 chr3 7247729 7247851 -152351932 - Lx2A LINE L1 -4 7004 6880 2 640 515 321 7 14 chr3 7247975 7248114 -152351669 + RSINE1 SINE B4 3 140 -25 2 640 545 111 22 0 chr3 7249046 7249136 -152350647 + (GAAA)n Simple_repeat Simple_repeat 2 93 0 2 640 1076 116 6 0 chr3 7249136 7249308 -152350475 + (GAAAA)n Simple_repeat Simple_repeat 3 175 0 2 640 608 293 109 7 chr3 7249780 7250055 -152349728 - Tigger7 DNA MER2_type -43 2448 2146 2 640 527 156 0 22 chr3 7250256 7250439 -152349344 + (TA)n Simple_repeat Simple_repeat 2 180 0 3 640 200 312 0 0 chr3 7250440 7250504 -152349279 + (CATATA)n Simple_repeat Simple_repeat 5 68 0 3 640 7628 52 23 2 chr3 7250769 7251894 -152347889 - L1Md_F2 LINE L1 -12 6570 5426 3 640 7200 75 4 37 chr3 7251883 7252799 -152346984 + L1_Mm LINE L1 4383 5292 -591 3 640 7839 44 2 1 chr3 7252799 7253754 -152346029 + L1Md_F2 LINE L1 5626 6581 -1 3 640 7200 75 4 37 chr3 7253754 7253865 -152345918 + L1_Mm LINE L1 5293 5376 -507 3 640 264 122 0 0 chr3 7254206 7254247 -152345536 + (TTTTC)n Simple_repeat Simple_repeat 3 43 0 3 640 369 371 8 15 chr3 7254384 7254518 -152345265 + B1F1 SINE Alu 2 134 -15 3 640 248 364 7 79 chr3 7254385 7254537 -152345246 + ID_B1 SINE B4 84 224 0 3 640 645 282 18 14 chr3 7254537 7254756 -152345027 + Lx9 LINE L1 7257 7476 -168 3 640 31 44 0 0 chr3 7254848 7254893 -152344890 + AT_rich Low_complexity Low_complexity 1 45 0 3 640 231 312 53 21 chr3 7255471 7255566 -152344217 + MLT1G LTR MaLR 489 586 -5 3 640 2592 41 0 0 chr3 7255584 7255898 -152343885 - L1Md_T LINE L1 0 6582 6269 3 640 303 85 23 47 chr3 7256758 7256844 -152342939 + (TA)n Simple_repeat Simple_repeat 2 85 0 3 640 326 189 38 0 chr3 7256906 7257012 -152342771 + (TA)n Simple_repeat Simple_repeat 1 110 0 3 640 315 0 0 0 chr3 7257078 7257113 -152342670 + (TCCA)n Simple_repeat Simple_repeat 2 36 0 3 640 1053 227 117 35 chr3 7259579 7259921 -152339862 + ORR1D1 LTR MaLR 1 370 -4 3 640 26 50 0 0 chr3 7260044 7260084 -152339699 + AT_rich Low_complexity Low_complexity 1 40 0 3 640 205 325 100 54 chr3 7260137 7260259 -152339524 - MIR SINE MIR -114 148 20 3 640 1376 58 0 11 chr3 7260259 7260449 -152339334 - L1Md_F2 LINE L1 0 6582 6395 3 640 21 36 0 0 chr3 7260969 7260997 -152338786 + AT_rich Low_complexity Low_complexity 1 28 0 3 640 1065 82 0 20 chr3 7261180 7261330 -152338453 + B1_Mus2 SINE Alu 1 147 0 3 640 413 224 32 19 chr3 7261347 7261502 -152338281 - Lx9 LINE L1 -22 7622 7466 3 640 1898 158 157 26 chr3 7261655 7262083 -152337700 - Lx3A LINE L1 -467 6514 6031 3 640 253 313 30 20 chr3 7262197 7262298 -152337485 - MTEb LTR MaLR -3 376 275 3 640 7393 175 84 35 chr3 7262661 7263022 -152336761 + MYSERV16_I-int LTR ERVK 399 761 -1565 3 640 198 0 0 0 chr3 7263022 7263044 -152336739 + (TA)n Simple_repeat Simple_repeat 2 23 0 3 640 7393 175 84 35 chr3 7263044 7264520 -152335263 + MYSERV16_I-int LTR ERVK 762 2326 0 3 640 2013 217 16 11 chr3 7264520 7264959 -152334824 + BGLII_B LTR ERVK 1 441 0 3 640 421 279 37 12 chr3 7265356 7265519 -152334264 + CT-rich Low_complexity Low_complexity 1 167 0 3 640 4042 126 26 9 chr3 7265544 7266195 -152333588 - Lx2 LINE L1 -6 6991 6330 3 640 266 271 80 53 chr3 7266276 7266463 -152333320 - HAL1 LINE L1 -831 1676 1485 3 640 23 68 0 0 chr3 7266467 7266511 -152333272 + AT_rich Low_complexity Low_complexity 1 44 0 3 640 1751 109 27 66 chr3 7266553 7266888 -152332895 + RLTRETN_Mm LTR ERVK 1 322 0 3 640 408 185 9 18 chr3 7267154 7267264 -152332519 + (TA)n Simple_repeat Simple_repeat 1 109 0 3 640 2600 44 28 0 chr3 7267755 7268073 -152331710 + IAPLTR2b LTR ERVK 1 327 0 3 640 3565 87 36 2 chr3 7268531 7269029 -152330754 - L1Md_F2 LINE L1 -2 6580 6066 3 640 203 98 24 0 chr3 7269067 7269095 -152330688 + (TA)n Simple_repeat Simple_repeat 2 30 0 3 640 225 0 0 0 chr3 7269095 7269120 -152330663 + (CA)n Simple_repeat Simple_repeat 2 26 0 3 640 203 98 24 0 chr3 7269120 7269132 -152330651 + (TA)n Simple_repeat Simple_repeat 2 13 0 3 640 3379 78 36 44 chr3 7270641 7271136 -152328647 + L1_Mus2 LINE L1 6076 6566 0 3 640 24 53 0 0 chr3 7271199 7271237 -152328546 + AT_rich Low_complexity Low_complexity 1 38 0 3 640 1487 132 112 50 chr3 7271509 7271812 -152327971 - ORR1A4 LTR MaLR -7 322 1 3 640 6053 119 15 11 chr3 7272038 7272991 -152326792 - Lx2 LINE L1 -1 6996 6040 3 640 3597 146 7 3 chr3 7272992 7273576 -152326207 + L1_Mm LINE L1 5217 5802 -81 3 640 557 94 12 0 chr3 7274056 7274141 -152325642 + (TAGG)n Simple_repeat Simple_repeat 1 86 0 3 640 186 43 0 0 chr3 7274143 7274166 -152325617 + (ATATG)n Simple_repeat Simple_repeat 3 25 0 3 640 259 347 23 68 chr3 7274526 7274659 -152325124 + L2b LINE L2 3244 3370 -5 3 640 195 333 121 0 chr3 7274862 7274961 -152324822 - MIRb SINE MIR -99 169 59 3 640 279 266 101 0 chr3 7275369 7275478 -152324305 - MER104 DNA Tc2 -58 123 4 3 640 1319 112 0 5 chr3 7275557 7275745 -152324038 - B2_Mm2 SINE B2 -8 187 1 3 640 826 326 135 36 chr3 7276036 7276813 -152322970 - Lx8 LINE L1 -3 7470 6617 3 640 408 269 44 22 chr3 7276856 7276993 -152322790 - Lx8 LINE L1 -965 6508 6369 3 640 26 0 0 0 chr3 7277520 7277546 -152322237 + AT_rich Low_complexity Low_complexity 1 26 0 3 640 258 307 0 0 chr3 7278105 7278180 -152321603 + (TATG)n Simple_repeat Simple_repeat 2 76 0 3 640 239 220 0 0 chr3 7278433 7278483 -152321300 + RLTR18B LTR ERVK 144 193 -319 3 640 188 34 0 33 chr3 7278705 7278735 -152321048 + (TTG)n Simple_repeat Simple_repeat 2 30 0 3 640 841 160 21 1 chr3 7278939 7279093 -152320690 + Lx2 LINE L1 6591 6743 -257 3 640 432 37 0 0 chr3 7279093 7279147 -152320636 + (CA)n Simple_repeat Simple_repeat 1 54 0 3 640 834 245 116 19 chr3 7279147 7279362 -152320421 + Lx2 LINE L1 6744 6996 -4 3 640 456 19 0 0 chr3 7279810 7279863 -152319920 + (TG)n Simple_repeat Simple_repeat 1 53 0 3 640 25 31 0 0 chr3 7280864 7280896 -152318887 + AT_rich Low_complexity Low_complexity 1 32 0 3 640 762 88 56 0 chr3 7280985 7281110 -152318673 - Lx LINE L1 -669 5985 5854 3 640 1796 142 70 0 chr3 7281120 7281450 -152318333 + Lx2 LINE L1 5929 6281 -716 3 640 825 191 88 32 chr3 7281450 7281699 -152318084 + RMER17B LTR ERVK 179 441 -517 3 640 4039 203 43 62 chr3 7281709 7282089 -152317694 + RLTR13C1 LTR ERVK 1 355 -628 3 640 8019 47 1 4 chr3 7282089 7283095 -152316688 + L1Md_F2 LINE L1 5588 6582 0 3 640 4039 203 43 62 chr3 7283095 7283704 -152316079 + RLTR13C1 LTR ERVK 356 972 -11 3 640 922 146 6 18 chr3 7283700 7283868 -152315915 + RMER17C LTR ERVK 244 409 -1 3 640 4204 134 40 1 chr3 7283868 7284561 -152315222 + Lx2 LINE L1 6277 6996 -1 3 640 323 146 36 0 chr3 7284585 7284640 -152315143 + ORR1B2 LTR MaLR 311 367 0 3 640 183 315 126 0 chr3 7285326 7285437 -152314346 - L2 LINE L2 -1066 2353 2229 3 640 747 184 7 7 chr3 7285587 7285724 -152314059 - B3 SINE B2 -79 137 1 3 640 571 352 65 44 chr3 7288068 7288229 -152311554 - MTE2a LTR MaLR -8 371 212 3 640 459 82 0 0 chr3 7288229 7288302 -152311481 + (CTAAA)n Simple_repeat Simple_repeat 3 75 0 3 640 571 352 65 44 chr3 7288302 7288434 -152311349 - MTE2a LTR MaLR -168 211 72 3 640 1988 170 65 10 chr3 7288438 7288505 -152311278 - MTB_Mm LTR MaLR 0 407 342 3 640 285 16 97 0 chr3 7288505 7288567 -152311216 + (TTTG)n Simple_repeat Simple_repeat 2 69 0 3 640 1988 170 65 10 chr3 7288567 7288885 -152310898 - MTB_Mm LTR MaLR -66 341 3 3 640 2376 316 132 70 chr3 7288962 7290304 -152309479 - MTB_Mm-int LTR MaLR -2 1578 1 3 640 713 319 26 30 chr3 7290305 7290570 -152309213 - MTB_Mm LTR MaLR -1 378 115 3 640 24 53 0 0 chr3 7290738 7290776 -152309007 + AT_rich Low_complexity Low_complexity 1 38 0 3 640 288 0 0 0 chr3 7290912 7290944 -152308839 + (TA)n Simple_repeat Simple_repeat 2 33 0 3 640 260 312 21 35 chr3 7290947 7291090 -152308693 - L3 LINE CR1 -1970 2519 2379 3 640 2705 59 0 0 chr3 7291479 7291820 -152307963 - L1_Mus1 LINE L1 0 6567 6227 3 640 487 341 22 55 chr3 7292499 7292682 -152307101 - B3A SINE B2 -2 196 20 3 640 417 39 0 0 chr3 7292870 7292921 -152306862 + (TG)n Simple_repeat Simple_repeat 2 52 0 3 640 227 310 53 53 chr3 7293388 7293463 -152306320 - RLTR1D LTR ERV1 -321 284 210 3 640 1153 118 5 5 chr3 7293621 7293809 -152305974 + Lx LINE L1 6449 6636 -18 3 640 333 0 0 0 chr3 7294248 7294285 -152305498 + (GA)n Simple_repeat Simple_repeat 2 38 0 3 640 477 122 0 0 chr3 7294777 7294851 -152304932 + (TTTA)n Simple_repeat Simple_repeat 3 76 0 3 640 275 275 142 0 chr3 7295461 7295581 -152304202 - L1M2 LINE L1 -2018 4122 3986 3 640 5290 115 44 0 chr3 7295705 7296530 -152303253 + L1_Mur2 LINE L1 4758 5618 -259 3 640 815 285 122 53 chr3 7296530 7297653 -152302130 - L1M2 LINE L1 -2733 3410 2211 3 640 287 289 11 0 chr3 7300436 7300526 -152299257 + (TA)n Simple_repeat Simple_repeat 1 91 0 3 640 28 48 0 0 chr3 7300603 7300645 -152299138 + AT_rich Low_complexity Low_complexity 1 42 0 3 640 2710 26 6 197 chr3 7301490 7301972 -152297811 - RLTR10 LTR ERVK 0 390 1 3 640 8759 24 0 0 chr3 7301974 7302969 -152296814 - RLTR10-int LTR ERVK -3 1984 990 3 640 346 248 62 39 chr3 7303051 7303181 -152296602 - RLTR10-int LTR ERVK -5987 1594 1462 3 640 6792 60 86 11 chr3 7303245 7304187 -152295596 - RLTR10-int LTR ERVK -989 998 9 3 640 2728 28 6 197 chr3 7304188 7304670 -152295113 - RLTR10 LTR ERVK 0 390 1 3 640 529 327 24 14 chr3 7305265 7305473 -152294310 - B3 SINE B2 -6 210 1 3 640 180 0 0 0 chr3 7307678 7307698 -152292085 + (TA)n Simple_repeat Simple_repeat 2 21 0 3 640 665 330 60 11 chr3 7308868 7309135 -152290648 - MLT2B1 LTR ERVL -78 442 163 3 640 235 369 42 68 chr3 7309536 7309728 -152290055 - LTR33A_ LTR ERVL -119 412 226 3 640 35439 35 0 0 chr3 7311144 7316571 -152283212 + L1Md_T LINE L1 66 5589 -297 3 640 8889 9 0 0 chr3 7316571 7317567 -152282216 + L1Md_T LINE L1 5590 6585 0 3 640 333 0 0 0 chr3 7318221 7318258 -152281525 + (ACATG)n Simple_repeat Simple_repeat 4 40 0 3 640 25087 164 12 21 chr3 7318589 7320390 -152279393 + L1_Mus4 LINE L1 718 2500 -3383 3 640 1046 97 7 0 chr3 7320390 7320534 -152279249 + B1_Mus1 SINE Alu 3 147 -1 3 640 25087 160 14 21 chr3 7320534 7321550 -152278233 + L1_Mus4 LINE L1 2501 3489 -2394 3 640 516 32 0 0 chr3 7321550 7321612 -152278171 + (GA)n Simple_repeat Simple_repeat 2 63 0 3 640 25087 160 14 21 chr3 7321612 7323496 -152276287 + L1_Mus4 LINE L1 3490 5386 -497 3 640 4820 193 62 14 chr3 7323496 7324559 -152275224 - RLTR13D3 LTR ERVK 0 1114 1 3 640 25087 101 14 4 chr3 7324559 7325800 -152273983 + L1_Mus4 LINE L1 5387 6636 0 3 640 324 0 0 0 chr3 7326152 7326188 -152273595 + (T)n Simple_repeat Simple_repeat 1 36 0 3 640 261 308 559 24 chr3 7326222 7326396 -152273387 - ORR1E LTR MaLR -109 270 4 3 640 3157 46 21 0 chr3 7326403 7326791 -152272992 - MTA_Mm LTR MaLR 0 396 1 3 640 8650 51 5 21 chr3 7326792 7327906 -152271877 - MTA_Mm-int LTR MaLR -1 1097 1 3 640 3221 36 15 0 chr3 7327906 7328296 -152271487 - MTA_Mm LTR MaLR 0 396 1 3 640 273 284 161 59 chr3 7328361 7328517 -152271266 + MTEb LTR MaLR 205 379 0 3 640 328 269 75 11 chr3 7328711 7328805 -152270978 + PB1D7 SINE Alu 19 118 -2 3 640 2321 274 56 5 chr3 7329069 7329728 -152270055 - Lx6 LINE L1 0 7460 6768 4 640 814 162 124 23 chr3 7329733 7329910 -152269873 + RMER17C-int LTR ERVK 2816 3010 -228 4 640 429 184 9 19 chr3 7329877 7329982 -152269801 + RMER17C-int LTR ERVK 2907 3010 -228 4 640 379 178 29 19 chr3 7329949 7330052 -152269731 + RMER17C-int LTR ERVK 2907 3010 -228 4 640 449 175 9 19 chr3 7330019 7330124 -152269659 + RMER17C-int LTR ERVK 2907 3010 -228 4 640 1523 177 45 39 chr3 7330091 7330421 -152269362 + RMER17C-int LTR ERVK 2907 3238 0 4 640 1304 164 34 66 chr3 7330427 7330747 -152269036 + RMER17C LTR ERVK 1 310 -100 4 640 706 261 20 20 chr3 7330750 7330953 -152268830 - B3 SINE B2 -10 206 4 4 640 822 304 80 11 chr3 7330955 7331624 -152268159 + L1MA5 LINE L1 5139 5828 -472 4 640 259 315 43 0 chr3 7331797 7331889 -152267894 + B3 SINE B2 97 192 -24 4 640 23 54 0 0 chr3 7332201 7332238 -152267545 + AT_rich Low_complexity Low_complexity 1 37 0 4 640 4893 54 3 3 chr3 7332242 7332860 -152266923 - L1Md_F2 LINE L1 0 6582 5965 4 640 413 69 0 0 chr3 7332848 7332906 -152266877 - L1_Mus2 LINE L1 -10 6556 6499 4 640 489 197 64 21 chr3 7333120 7333260 -152266523 + Lx6 LINE L1 7307 7452 -8 4 640 218 344 0 0 chr3 7333919 7333983 -152265800 - L2a LINE L2 -9 3417 3354 4 640 1470 194 6 41 chr3 7334524 7334667 -152265116 - RMER1C Other Other -6 1336 1203 4 640 1163 93 0 6 chr3 7334667 7334839 -152264944 + (GAAA)n Simple_repeat Simple_repeat 2 172 0 4 640 1470 194 6 41 chr3 7334839 7335012 -152264771 - RMER1C Other Other -140 1202 1031 4 640 1020 93 0 0 chr3 7335018 7335158 -152264625 + B2_Mm2 SINE B2 1 140 -55 4 640 1108 313 88 45 chr3 7335164 7335723 -152264060 - RMER1C Other Other -320 1022 440 4 640 207 167 0 0 chr3 7335747 7335789 -152263994 + (CATATA)n Simple_repeat Simple_repeat 4 45 0 4 640 399 21 0 0 chr3 7335821 7335869 -152263914 + (TG)n Simple_repeat Simple_repeat 1 48 0 4 640 2769 231 68 20 chr3 7338218 7338863 -152260920 - Lx7 LINE L1 -602 7094 6419 4 640 1896 279 34 86 chr3 7338858 7339857 -152259926 + Lx7 LINE L1 5451 6401 -1295 4 640 25 31 0 0 chr3 7339861 7339893 -152259890 + AT_rich Low_complexity Low_complexity 1 32 0 4 641 769 176 16 0 chr3 7340240 7340365 -152259418 + B1_Mur3 SINE Alu 14 140 -9 4 641 663 201 0 0 chr3 7340754 7340893 -152258890 + CT-rich Low_complexity Low_complexity 2 140 0 4 641 207 0 0 0 chr3 7340894 7340917 -152258866 + (TTTA)n Simple_repeat Simple_repeat 4 26 0 4 641 8956 104 17 9 chr3 7340931 7342450 -152257333 - Lx3A LINE L1 -70 6911 5384 4 641 288 219 15 15 chr3 7343340 7343405 -152256378 + PB1D10 SINE Alu 46 110 -7 4 641 460 256 177 0 chr3 7343638 7343802 -152255981 + Lx7 LINE L1 6351 6543 -930 4 641 192 125 0 0 chr3 7343814 7343846 -152255937 + (T)n Simple_repeat Simple_repeat 1 32 0 4 641 27968 115 32 4 chr3 7344040 7347050 -152252733 - L1_Mus3 LINE L1 -12 6626 3584 4 641 228 35 0 0 chr3 7347050 7347079 -152252704 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 4 641 27968 118 46 11 chr3 7347079 7350065 -152249718 - L1_Mus3 LINE L1 -2300 3583 432 4 641 446 341 77 4 chr3 7350082 7350315 -152249468 + Lx7 LINE L1 6568 6817 -656 4 641 552 30 0 0 chr3 7350331 7350397 -152249386 + (TA)n Simple_repeat Simple_repeat 2 67 0 4 641 965 9 0 0 chr3 7350397 7350513 -152249270 + IAPEY2_LTR LTR ERVK 4 119 -238 4 641 1056 30 8 0 chr3 7350511 7350642 -152249141 + IAPEY2_LTR LTR ERVK 223 354 -3 4 641 198 0 0 0 chr3 7350642 7350664 -152249119 + (TA)n Simple_repeat Simple_repeat 2 23 0 4 641 423 38 0 0 chr3 7350916 7350969 -152248814 + (CAAAA)n Simple_repeat Simple_repeat 2 54 0 4 641 214 266 126 87 chr3 7351150 7351253 -152248530 - MIRb SINE MIR -154 114 8 4 641 262 322 78 43 chr3 7351807 7352089 -152247694 + L1M4 LINE L1 3843 4134 -2012 4 641 248 276 94 76 chr3 7352088 7352363 -152247420 + L1M4 LINE L1 4946 5225 -915 4 641 27 0 0 0 chr3 7352408 7352435 -152247348 + AT_rich Low_complexity Low_complexity 1 27 0 4 641 225 283 0 0 chr3 7353581 7353641 -152246142 + L1MC4a LINE L1 6229 6288 -1594 4 641 230 242 31 31 chr3 7353653 7353751 -152246032 + L1MC4a LINE L1 6959 7056 -826 4 641 552 254 0 8 chr3 7354375 7354494 -152245289 - RLTR40 LTR ERVK -6 811 694 4 641 234 150 0 0 chr3 7355386 7355426 -152244357 + (ATAGG)n Simple_repeat Simple_repeat 1 40 0 4 641 231 36 0 0 chr3 7355466 7355494 -152244289 + (TAAA)n Simple_repeat Simple_repeat 3 30 0 4 641 295 202 33 33 chr3 7356042 7356134 -152243649 - L1MA5 LINE L1 -23 6277 6186 4 641 316 275 180 19 chr3 7356246 7356379 -152243404 - MTD LTR MaLR -20 399 241 4 641 489 47 0 0 chr3 7357710 7357774 -152242009 + (CA)n Simple_repeat Simple_repeat 1 64 0 4 641 396 0 0 0 chr3 7357774 7357817 -152241966 + (GA)n Simple_repeat Simple_repeat 2 45 0 4 641 519 274 72 41 chr3 7358020 7358214 -152241569 + Lx8 LINE L1 6824 7023 -450 4 641 1692 25 0 0 chr3 7358232 7358435 -152241348 + ORR1A0 LTR MaLR 144 346 0 4 641 676 87 19 9 chr3 7358465 7358570 -152241213 - Lx4B LINE L1 -311 6747 6642 4 641 819 48 0 0 chr3 7359162 7359266 -152240517 + (GA)n Simple_repeat Simple_repeat 1 104 0 4 641 182 288 0 57 chr3 7359831 7359901 -152239882 - L3 LINE CR1 -4273 216 151 4 641 4536 154 75 8 chr3 7359936 7360761 -152239022 - Lx4B LINE L1 0 7058 6179 4 641 485 308 158 28 chr3 7361215 7361469 -152238314 + RMER5 LTR ERV1 27 313 -221 4 641 1383 262 28 6 chr3 7361474 7361827 -152237956 - MTD LTR MaLR -1 418 58 4 641 612 288 60 5 chr3 7361860 7362059 -152237724 + RMER5 LTR ERV1 309 518 -16 4 641 312 161 0 0 chr3 7362289 7362351 -152237432 + (TAAA)n Simple_repeat Simple_repeat 1 62 0 4 641 519 45 0 0 chr3 7362598 7362664 -152237119 + (GA)n Simple_repeat Simple_repeat 1 66 0 4 641 598 275 0 7 chr3 7362906 7363056 -152236727 + B1_Mur2 SINE Alu 1 149 0 4 641 569 307 136 49 chr3 7363136 7364048 -152235735 + L1MC3 LINE L1 6368 7358 -427 4 641 355 365 87 7 chr3 7364048 7364324 -152235459 + L1MC3 LINE L1 7466 7763 -22 4 641 1079 221 47 19 chr3 7364438 7364762 -152235021 - ORR1B1 LTR MaLR -8 386 1 4 641 253 256 21 75 chr3 7364762 7364852 -152234931 - Charlie4a DNA MER1_type -360 148 64 4 641 471 272 56 28 chr3 7365612 7365790 -152233993 + RLTR41 LTR ERV1 264 446 0 4 641 360 0 0 0 chr3 7368575 7368615 -152231168 + (TA)n Simple_repeat Simple_repeat 2 41 0 4 641 330 26 0 0 chr3 7368615 7368653 -152231130 + (TG)n Simple_repeat Simple_repeat 2 40 0 4 641 440 263 0 6 chr3 7369316 7369496 -152230287 + (CA)n Simple_repeat Simple_repeat 2 180 0 4 641 378 239 0 19 chr3 7369508 7369666 -152230117 + (CA)n Simple_repeat Simple_repeat 2 156 0 4 641 666 25 0 0 chr3 7369723 7369803 -152229980 + (GA)n Simple_repeat Simple_repeat 1 80 0 4 641 8118 85 4 11 chr3 7370108 7371988 -152227795 - L1_Mus2 LINE L1 -1 6565 4701 4 641 2517 85 3 14 chr3 7372121 7372480 -152227303 - Lx3A LINE L1 -5 6976 6622 4 641 815 135 14 0 chr3 7372874 7373015 -152226768 + (GAAA)n Simple_repeat Simple_repeat 3 145 0 4 641 1326 78 0 0 chr3 7373018 7373198 -152226585 + (GGGAA)n Simple_repeat Simple_repeat 1 180 0 4 641 23 54 0 0 chr3 7373788 7373825 -152225958 + AT_rich Low_complexity Low_complexity 1 37 0 4 641 21 57 0 0 chr3 7373890 7373925 -152225858 + AT_rich Low_complexity Low_complexity 1 35 0 4 641 473 278 120 29 chr3 7373978 7374286 -152225497 - L1MB4 LINE L1 -74 6106 5771 4 641 227 359 31 15 chr3 7375456 7375521 -152224262 + FLAM_A SINE Alu 1 66 -229 4 641 23 0 0 0 chr3 7376153 7376176 -152223607 + AT_rich Low_complexity Low_complexity 1 23 0 4 641 384 317 106 27 chr3 7376647 7376835 -152222948 + B3 SINE B2 4 206 -10 4 641 12203 101 21 5 chr3 7379204 7381799 -152217984 + L1_Mus3 LINE L1 3995 6638 0 4 641 389 261 0 0 chr3 7381801 7381889 -152217894 + B3A SINE B2 27 114 -84 4 641 820 218 66 20 chr3 7382225 7382422 -152217361 - B3 SINE B2 -9 207 2 4 641 267 131 62 62 chr3 7383004 7383069 -152216714 + Lx7 LINE L1 7632 7696 0 4 641 1118 68 14 7 chr3 7383797 7383944 -152215839 + B1_Mur4 SINE Alu 2 149 -1 4 641 216 91 22 43 chr3 7383944 7383990 -152215793 + (CAAA)n Simple_repeat Simple_repeat 1 45 0 4 641 487 344 38 19 chr3 7385959 7386220 -152213563 - Lx9 LINE L1 -268 7376 7111 4 641 249 108 0 0 chr3 7387200 7387237 -152212546 + (TTTTC)n Simple_repeat Simple_repeat 3 39 0 4 641 1182 68 0 0 chr3 7387237 7387384 -152212399 - B1_Mus1 SINE Alu 0 148 2 4 641 211 268 0 18 chr3 7387715 7387772 -152212011 + G-rich Low_complexity Low_complexity 1 56 0 4 641 695 11 23 0 chr3 7388046 7388133 -152211650 + (TTTTC)n Simple_repeat Simple_repeat 2 90 0 4 641 305 161 143 0 chr3 7389325 7389381 -152210402 + RLTR17 LTR ERVK 1 64 -628 4 641 2220 193 37 39 chr3 7389379 7389935 -152209848 + RLTR31_Mm LTR ERVK 53 561 0 4 641 4490 282 37 35 chr3 7390079 7391549 -152208234 - Lx7 LINE L1 -391 7305 5833 4 641 829 274 60 25 chr3 7391540 7391854 -152207929 - L1_Mur3 LINE L1 -526 5354 5030 4 641 238 273 64 13 chr3 7392840 7392918 -152206865 - B4A SINE B4 -208 84 3 4 641 267 193 106 64 chr3 7392943 7393037 -152206746 - L1_Rod LINE L1 -389 5458 5361 4 641 279 0 0 0 chr3 7393490 7393521 -152206262 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 4 641 531 313 79 97 chr3 7393537 7393982 -152205801 - MER67D LTR ERV1 -77 437 1 4 641 1974 191 41 38 chr3 7394129 7394547 -152205236 + MTC LTR MaLR 1 419 -2 4 641 297 309 18 35 chr3 7394587 7394701 -152205082 - PB1D10 SINE Alu -3 114 3 4 641 21524 103 29 8 chr3 7395442 7398545 -152201238 - ETnERV2-int LTR ERVK -1184 6222 3055 4 641 555 233 59 40 chr3 7398545 7398697 -152201086 - ETnERV2-int LTR ERVK -4798 2608 2454 4 641 691 167 25 0 chr3 7398710 7398830 -152200953 - RLTR19-int LTR ERVK -5077 1060 938 4 641 253 146 0 0 chr3 7398905 7398953 -152200830 - RLTR19-int LTR ERVK -5218 188 141 4 641 263 203 0 17 chr3 7399392 7399452 -152200331 - ETnERV2-int LTR ERVK -5095 2149 2091 4 641 953 212 19 111 chr3 7399446 7399770 -152200013 - MMETn-int LTR ERVK -4549 295 2 4 641 2333 116 12 49 chr3 7399772 7400197 -152199586 - RLTR9E LTR ERVK 0 409 1 4 641 7728 144 28 4 chr3 7400197 7401542 -152198241 + L1_Mm LINE L1 2912 4289 -1594 4 641 7267 110 11 4 chr3 7401553 7402595 -152197188 + L1_Mus3 LINE L1 5588 6636 -2 4 641 267 238 60 35 chr3 7403449 7403649 -152196134 + L1MDb LINE L1 1115 1319 -5090 4 641 487 270 100 21 chr3 7404017 7404157 -152195626 + ID_B1 SINE B4 70 220 -4 4 641 230 125 0 0 chr3 7404159 7404191 -152195592 + (GGAA)n Simple_repeat Simple_repeat 2 33 0 4 641 528 122 0 0 chr3 7404191 7404273 -152195510 + (GA)n Simple_repeat Simple_repeat 1 82 0 4 641 409 246 25 17 chr3 7404273 7404393 -152195390 + GA-rich Low_complexity Low_complexity 4 124 0 5 641 508 358 56 48 chr3 7405342 7405679 -152194104 + LTR16C LTR ERVL 148 487 -2 5 641 1124 82 0 0 chr3 7406443 7406581 -152193202 + B1_Mus2 SINE Alu 1 138 -9 5 641 257 0 30 0 chr3 7406581 7406614 -152193169 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 5 641 6684 137 51 1 chr3 7407410 7408523 -152191260 - Lx2 LINE L1 0 6997 5829 5 641 1741 170 6 9 chr3 7408778 7409099 -152190684 - RLTR46 LTR ERVK 0 320 1 5 641 261 83 0 0 chr3 7409514 7409550 -152190233 + (T)n Simple_repeat Simple_repeat 1 36 0 5 641 190 160 40 0 chr3 7410466 7410516 -152189267 + (CATATA)n Simple_repeat Simple_repeat 3 54 0 5 641 19776 167 112 8 chr3 7410846 7411284 -152188499 - Lx2 LINE L1 -109 5777 5301 5 641 4903 92 0 1 chr3 7411284 7411961 -152187822 + L1_Mus1 LINE L1 5892 6567 0 5 641 23004 118 20 8 chr3 7411961 7412704 -152187079 - Lx2 LINE L1 -586 5300 4209 5 641 309 51 0 0 chr3 7412704 7412743 -152187040 + (CA)n Simple_repeat Simple_repeat 1 39 0 5 641 23004 146 40 34 chr3 7412743 7416644 -152183139 - Lx2 LINE L1 -1675 4208 273 5 641 208 28 83 0 chr3 7418100 7418136 -152181647 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 5 641 183 335 43 86 chr3 7418680 7418866 -152180917 + L2 LINE L2 2262 2439 -980 5 641 1307 147 14 18 chr3 7418899 7419121 -152180662 + URR1B DNA MER1_type 1 221 -4 5 641 483 229 9 19 chr3 7419130 7419237 -152180546 - PB1D10 SINE Alu -8 109 4 5 641 221 373 134 48 chr3 7419263 7419742 -152180041 + L2 LINE L2 2534 3053 -366 5 641 399 98 0 0 chr3 7420574 7420635 -152179148 + (TA)n Simple_repeat Simple_repeat 1 61 0 5 641 442 317 53 9 chr3 7420635 7420878 -152178905 + L1MC4 LINE L1 6650 6937 -1105 5 641 428 292 148 59 chr3 7421251 7421608 -152178175 + L1MC4 LINE L1 7509 7897 -145 5 641 22 56 0 0 chr3 7421631 7421667 -152178116 + AT_rich Low_complexity Low_complexity 1 36 0 5 641 25 0 0 0 chr3 7422191 7422216 -152177567 + AT_rich Low_complexity Low_complexity 1 25 0 5 641 375 23 0 0 chr3 7422250 7422294 -152177489 + (CA)n Simple_repeat Simple_repeat 1 44 0 5 641 370 291 191 0 chr3 7423348 7423458 -152176325 + RSINE1 SINE B4 13 143 -22 5 641 702 35 0 0 chr3 7423512 7423597 -152176186 + (TAGA)n Simple_repeat Simple_repeat 3 87 0 5 641 232 333 48 10 chr3 7423597 7423700 -152176083 + B1F2 SINE Alu 40 146 -3 5 641 294 333 0 0 chr3 7423713 7423788 -152175995 + ID4_ SINE ID 5 79 -4 5 641 368 245 49 36 chr3 7423976 7424101 -152175682 + ID_B1 SINE B4 74 195 -29 5 641 302 250 60 43 chr3 7424002 7424119 -152175664 + B1_Mus1 SINE Alu 15 133 -15 5 641 294 307 131 70 chr3 7425297 7425398 -152174385 - ORSL-2a DNA Tip100 -9 333 223 5 641 1926 194 47 7 chr3 7425398 7425802 -152173981 + MTC LTR MaLR 1 420 -1 5 641 294 307 131 70 chr3 7425802 7425998 -152173785 - ORSL-2a DNA Tip100 -120 222 18 5 641 22 70 0 0 chr3 7426619 7426662 -152173121 + AT_rich Low_complexity Low_complexity 1 43 0 5 641 368 323 16 39 chr3 7426681 7426810 -152172973 - RSINE1 SINE B4 -38 127 2 5 641 236 286 58 58 chr3 7427005 7427109 -152172674 + MIRc SINE MIR 36 139 -129 5 641 318 26 0 0 chr3 7427777 7427816 -152171967 + (CTAA)n Simple_repeat Simple_repeat 4 42 0 5 641 189 0 0 0 chr3 7428036 7428057 -152171726 + (A)n Simple_repeat Simple_repeat 1 21 0 5 641 1249 311 77 44 chr3 7428066 7428731 -152171052 + Charlie1a DNA MER1_type 754 1440 -15 5 641 42 0 0 0 chr3 7429434 7429476 -152170307 + AT_rich Low_complexity Low_complexity 1 42 0 5 641 195 100 0 0 chr3 7429783 7429813 -152169970 + (TTCC)n Simple_repeat Simple_repeat 4 33 0 5 641 279 0 0 0 chr3 7429911 7429942 -152169841 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 5 641 21 0 0 0 chr3 7430055 7430076 -152169707 + AT_rich Low_complexity Low_complexity 1 21 0 5 641 1098 135 0 0 chr3 7432264 7432442 -152167341 + (GGAA)n Simple_repeat Simple_repeat 3 180 0 5 641 333 0 0 0 chr3 7432442 7432479 -152167304 + (GAAA)n Simple_repeat Simple_repeat 1 37 0 5 641 764 299 21 25 chr3 7433732 7434017 -152165766 - Lx9 LINE L1 -212 7432 7149 5 641 495 304 50 62 chr3 7434063 7434305 -152165478 - Lx9 LINE L1 -446 7198 6960 5 641 297 0 0 0 chr3 7434383 7434416 -152165367 + (TAA)n Simple_repeat Simple_repeat 3 35 0 5 641 23 33 0 0 chr3 7435341 7435371 -152164412 + AT_rich Low_complexity Low_complexity 1 30 0 5 641 306 50 0 0 chr3 7435797 7435837 -152163946 + (TC)n Simple_repeat Simple_repeat 2 41 0 5 641 546 289 0 19 chr3 7435848 7436007 -152163776 + Lx9 LINE L1 6938 7093 -551 5 641 1247 283 29 27 chr3 7436089 7436318 -152163465 - Lx9 LINE L1 -175 7469 7235 5 641 1734 215 30 5 chr3 7436318 7436688 -152163095 + ORR1C2 LTR MaLR 4 382 -2 5 641 1247 283 29 27 chr3 7436688 7436868 -152162915 - Lx9 LINE L1 -410 7234 7059 5 641 743 273 0 19 chr3 7436899 7437108 -152162675 - Lx9 LINE L1 -551 7093 6889 5 641 248 148 49 0 chr3 7437585 7437646 -152162137 + A-rich Low_complexity Low_complexity 6 69 0 5 641 22 94 0 0 chr3 7438087 7438151 -152161632 + AT_rich Low_complexity Low_complexity 1 64 0 5 641 33 56 0 0 chr3 7438859 7438913 -152160870 + AT_rich Low_complexity Low_complexity 1 54 0 5 641 296 319 86 7 chr3 7439625 7439764 -152160019 + RSINE1 SINE B4 3 152 -13 5 641 858 69 8 0 chr3 7439899 7440029 -152159754 - L1Md_F2 LINE L1 -1 6581 6451 5 641 7433 71 4 5 chr3 7440075 7441106 -152158677 + L1_Mus2 LINE L1 5537 6566 0 5 641 701 163 7 0 chr3 7445693 7445828 -152153955 + GA-rich Low_complexity Low_complexity 1 136 0 5 641 434 113 31 10 chr3 7446752 7446850 -152152933 + (TA)n Simple_repeat Simple_repeat 1 100 0 5 641 1174 48 7 0 chr3 7446988 7447134 -152152649 + B1_Mus1 SINE Alu 2 148 0 5 641 815 193 0 11 chr3 7447734 7447912 -152151871 + CT-rich Low_complexity Low_complexity 3 178 0 5 641 291 54 0 0 chr3 7447930 7447967 -152151816 + (TTCC)n Simple_repeat Simple_repeat 3 39 0 5 641 2906 78 17 2 chr3 7448005 7448415 -152151368 + Lx3B LINE L1 5608 6023 -950 5 641 1505 255 135 18 chr3 7448408 7448859 -152150924 - Lx5 LINE L1 -28 7022 6519 5 641 4435 130 48 15 chr3 7448978 7449761 -152150022 - RMER17D2 LTR ERVK 0 809 1 5 641 213 169 70 0 chr3 7449764 7449835 -152149948 + (CATATA)n Simple_repeat Simple_repeat 3 78 0 5 641 243 333 46 0 chr3 7449850 7449937 -152149846 + RSINE1 SINE B4 29 119 -46 5 641 246 321 57 0 chr3 7450825 7450965 -152148818 - L1ME3A LINE L1 -4 6169 6022 5 641 2723 199 151 13 chr3 7451256 7452116 -152147667 + RLTR25A LTR ERVK 1 1028 0 5 641 1207 278 25 8 chr3 7452292 7452648 -152147135 - Lx6 LINE L1 -8 7452 7091 5 641 699 194 14 7 chr3 7452650 7452795 -152146988 + URR1A DNA MER1_type 81 226 0 5 641 268 281 55 22 chr3 7452800 7452891 -152146892 - Lx6 LINE L1 -996 6464 6371 5 641 973 220 173 14 chr3 7454035 7454404 -152145379 + Lx7 LINE L1 5647 6074 -1622 5 641 298 85 17 17 chr3 7455256 7455316 -152144467 + (CAAAAA)n Simple_repeat Simple_repeat 2 61 0 5 641 267 54 0 0 chr3 7456601 7456638 -152143145 + (CA)n Simple_repeat Simple_repeat 2 38 0 5 641 456 19 0 0 chr3 7456638 7456690 -152143093 + (GA)n Simple_repeat Simple_repeat 2 54 0 5 641 2609 193 73 17 chr3 7456704 7457289 -152142494 + Lx6 LINE L1 6116 6733 -727 5 641 588 148 0 0 chr3 7457312 7457434 -152142349 + (CATA)n Simple_repeat Simple_repeat 2 123 0 5 641 406 111 0 0 chr3 7457438 7457501 -152142282 + Lx6 LINE L1 6750 6812 -648 5 641 562 250 0 17 chr3 7457500 7457675 -152142108 + Lx6 LINE L1 7289 7460 0 5 641 358 191 168 41 chr3 7458240 7458434 -152141349 + L1VL1 LINE L1 84 437 -5981 5 641 266 300 25 6 chr3 7458464 7458625 -152141158 + L1Md_F LINE L1 573 736 -5783 5 641 1765 171 8 17 chr3 7458604 7458962 -152140821 + L1Md_F LINE L1 628 982 -5537 5 641 891 58 41 0 chr3 7458985 7459106 -152140677 - B1_Mm SINE Alu 0 147 22 5 641 802 115 0 0 chr3 7459110 7459255 -152140528 + L1VL1 LINE L1 1146 1290 -5692 5 641 182 20 54 107 chr3 7459313 7459369 -152140414 + (TATAA)n Simple_repeat Simple_repeat 5 57 0 5 641 1148 279 25 31 chr3 7459716 7460075 -152139708 + Lx6 LINE L1 7078 7434 -26 5 641 30 69 0 0 chr3 7460075 7460133 -152139650 + AT_rich Low_complexity Low_complexity 1 58 0 5 641 313 300 59 68 chr3 7460883 7461119 -152138664 - L1MC5 LINE L1 -74 7887 7654 5 641 285 51 0 0 chr3 7461353 7461392 -152138391 + (TTTTG)n Simple_repeat Simple_repeat 3 41 0 5 641 1211 188 49 132 chr3 7462528 7462975 -152136808 - RMER17C LTR ERVK 0 410 1 5 641 321 98 0 0 chr3 7462975 7463026 -152136757 + Lx2B LINE L1 5784 5834 -1163 5 641 7005 80 34 5 chr3 7463021 7464349 -152135434 + L1_Mus3 LINE L1 5275 6638 0 5 641 6187 163 26 21 chr3 7464357 7465512 -152134271 + Lx2B LINE L1 5830 6990 -10 5 641 216 0 0 0 chr3 7466405 7466429 -152133354 + (CAAAAA)n Simple_repeat Simple_repeat 3 26 0 5 641 21 0 0 0 chr3 7466487 7466508 -152133275 + AT_rich Low_complexity Low_complexity 1 21 0 5 641 261 0 0 0 chr3 7466638 7466667 -152133116 + (TG)n Simple_repeat Simple_repeat 2 30 0 5 641 615 229 28 21 chr3 7466670 7466813 -152132970 - B1_Mus2 SINE Alu -1 146 3 5 641 4978 105 46 18 chr3 7466977 7467221 -152132562 + RLTR13D1 LTR ERVK 1 245 -561 5 641 3011 68 5 10 chr3 7467221 7467619 -152132164 + MTA_Mm LTR MaLR 1 396 0 5 641 4978 105 46 18 chr3 7467619 7468158 -152131625 + RLTR13D1 LTR ERVK 246 806 0 5 641 921 19 0 0 chr3 7468424 7468531 -152131252 + (TTTCC)n Simple_repeat Simple_repeat 3 109 0 5 641 6493 112 27 2 chr3 7468537 7469705 -152130078 - L1_Mus3 LINE L1 -7 6631 5441 5 641 748 123 71 0 chr3 7469702 7469857 -152129926 - L1VL4 LINE L1 -959 2600 2435 5 80 25768 88 4 11 chr3 7470033 7474641 -152125142 - L1Md_F2 LINE L1 -2 6580 2009 5 642 16881 97 5 11 chr3 7474642 7477400 -152122383 - L1Md_A LINE L1 -2052 3831 1096 5 642 36668 46 22 3 chr3 7477431 7483628 -152116155 - L1Md_A LINE L1 0 6582 263 5 642 332 111 0 0 chr3 7483629 7483683 -152116100 - L1Md_F LINE L1 -6291 228 175 5 642 413 117 65 12 chr3 7483711 7483799 -152115984 - ORR1B1 LTR MaLR -88 306 145 5 642 3703 163 45 0 chr3 7483799 7484492 -152115291 - L1Md_F LINE L1 -5536 983 260 6 642 9346 114 6 27 chr3 7484497 7486082 -152113701 - L1VL4 LINE L1 -1097 2462 913 5 642 5148 54 12 5 chr3 7486082 7486729 -152113054 - L1Md_F2 LINE L1 0 6582 5931 6 642 9346 205 60 41 chr3 7486729 7487443 -152112340 - L1VL4 LINE L1 -5390 912 165 5 642 192 179 0 0 chr3 7488151 7488190 -152111593 + (TAAA)n Simple_repeat Simple_repeat 1 39 0 6 642 309 26 0 0 chr3 7488295 7488333 -152111450 + (CA)n Simple_repeat Simple_repeat 2 39 0 6 642 333 235 68 10 chr3 7489373 7489476 -152110307 - L1MA4 LINE L1 -400 5900 5792 6 642 2035 164 66 20 chr3 7489488 7489930 -152109853 + L1_Mur2 LINE L1 4917 5378 -499 6 642 851 190 82 26 chr3 7489931 7490163 -152109620 + RMER17C LTR ERVK 1 245 -165 6 642 376 259 123 47 chr3 7490177 7490207 -152109576 + ORR1C2 LTR MaLR 154 186 -188 6 642 892 87 13 0 chr3 7490207 7490356 -152109427 + (TC)n Simple_repeat Simple_repeat 1 151 0 6 642 573 196 116 0 chr3 7490356 7490495 -152109288 + ORR1C2 LTR MaLR 187 346 -38 6 642 21 82 0 0 chr3 7492331 7492380 -152107403 + AT_rich Low_complexity Low_complexity 1 49 0 6 642 301 203 0 13 chr3 7492452 7492527 -152107256 - Lx3C LINE L1 -11 6965 6892 6 642 201 233 0 0 chr3 7493123 7493166 -152106617 + (ATGGTG)n Simple_repeat Simple_repeat 5 47 0 6 642 411 73 0 0 chr3 7493222 7493277 -152106506 + (TCCC)n Simple_repeat Simple_repeat 4 58 0 6 642 3215 184 51 5 chr3 7493285 7493918 -152105865 - Lx3C LINE L1 -11 6965 6304 6 642 1713 188 18 37 chr3 7493959 7494395 -152105388 - L1_Mur3 LINE L1 -2296 3584 3157 6 642 364 169 0 0 chr3 7494415 7494492 -152105291 + Lx9 LINE L1 7564 7640 -4 6 642 943 144 52 0 chr3 7495061 7495234 -152104549 + L1_Mur2 LINE L1 4899 5080 -797 6 642 2843 193 87 3 chr3 7495231 7495977 -152103806 + Lx4B LINE L1 6154 7054 -4 6 642 234 0 0 0 chr3 7496825 7496851 -152102932 + (A)n Simple_repeat Simple_repeat 1 26 0 6 642 488 289 19 107 chr3 7496870 7497029 -152102754 + B3A SINE B2 45 189 -9 6 642 193 172 0 49 chr3 7497685 7497746 -152102037 + CT-rich Low_complexity Low_complexity 4 61 0 6 642 24 67 0 0 chr3 7497897 7497942 -152101841 + AT_rich Low_complexity Low_complexity 1 45 0 6 642 2172 154 40 72 chr3 7497948 7498404 -152101379 + RMER4A LTR ERVK 4 444 -22 6 642 4475 195 27 9 chr3 7498492 7499999 -152099784 + L1VL4 LINE L1 704 2205 -3681 6 642 1474 185 62 6 chr3 7500000 7500337 -152099446 + L1_Mur1 LINE L1 2207 2562 -3324 1 642 826 111 0 0 chr3 7500334 7500460 -152099323 + L1_Mur1 LINE L1 3682 3807 -2070 1 642 887 156 6 0 chr3 7500459 7500632 -152099151 - L1_Mur1 LINE L1 -1813 4073 3900 2 642 1695 220 42 236 chr3 7500636 7501621 -152098162 - RMER1B Other Other -227 839 46 3 642 221 233 0 0 chr3 7502036 7502079 -152097704 + (TTG)n Simple_repeat Simple_repeat 3 45 0 4 642 297 75 0 0 chr3 7505021 7505061 -152094722 + (TATG)n Simple_repeat Simple_repeat 3 42 0 5 642 933 83 0 0 chr3 7506403 7506535 -152093248 + (TG)n Simple_repeat Simple_repeat 2 133 0 6 642 770 310 15 15 chr3 7506538 7506738 -152093045 - B3 SINE B2 -9 207 8 7 642 378 0 0 0 chr3 7507837 7507879 -152091904 + (TTTTA)n Simple_repeat Simple_repeat 4 45 0 8 642 24 32 0 0 chr3 7509459 7509490 -152090293 + AT_rich Low_complexity Low_complexity 1 31 0 9 642 1332 229 95 49 chr3 7509815 7510224 -152089559 - Lx8 LINE L1 -540 6933 6506 1 642 1991 167 17 14 chr3 7510232 7510591 -152089192 + ORR1B2 LTR MaLR 8 367 0 1 642 1210 235 13 30 chr3 7510595 7510721 -152089062 - Lx8 LINE L1 -969 6504 6384 1 642 3214 48 5 8 chr3 7510721 7511118 -152088665 + MTA_Mm LTR MaLR 1 396 0 1 642 1210 235 13 30 chr3 7511118 7511289 -152088494 - Lx8 LINE L1 -1090 6383 6212 1 642 252 337 144 27 chr3 7511867 7512043 -152087740 - MIR3 SINE MIR -9 199 3 1 642 1419 209 75 25 chr3 7512233 7512552 -152087231 + ORR1D1 LTR MaLR 13 347 -27 1 642 2836 194 58 2 chr3 7512574 7513148 -152086635 + ORR1D1-int LTR MaLR 14 619 -751 1 642 755 159 141 0 chr3 7513184 7513354 -152086429 + ORR1D1-int LTR MaLR 1177 1370 0 1 642 545 201 74 57 chr3 7513354 7513530 -152086253 + ORR1D1 LTR MaLR 1 184 -175 1 642 189 0 0 0 chr3 7513530 7513551 -152086232 + (TCTCTG)n Simple_repeat Simple_repeat 3 23 0 1 642 389 241 198 73 chr3 7513551 7513687 -152086096 + ORR1D1 LTR MaLR 185 352 -7 1 642 225 258 32 0 chr3 7513719 7513781 -152086002 - PB1D10 SINE Alu -20 97 34 1 642 225 0 0 0 chr3 7514565 7514590 -152085193 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 1 642 275 220 0 32 chr3 7515020 7515095 -152084688 - B3 SINE B2 -80 113 45 1 642 765 86 0 41 chr3 7515113 7515235 -152084548 - B1_Mus1 SINE Alu -24 124 8 1 642 207 0 0 0 chr3 7515342 7515365 -152084418 + (CCA)n Simple_repeat Simple_repeat 3 25 0 2 642 275 191 85 113 chr3 7515634 7515740 -152084043 - B1_Mus1 SINE Alu -23 125 23 2 642 442 277 8 0 chr3 7516845 7516964 -152082819 + PB1D7 SINE Alu 1 120 0 2 642 451 330 36 10 chr3 7516993 7517189 -152082594 + B3 SINE B2 2 202 -14 2 642 312 303 0 0 chr3 7517309 7517441 -152082342 + CT-rich Low_complexity Low_complexity 1 132 0 2 642 615 81 0 0 chr3 7517445 7517531 -152082252 + (TTCC)n Simple_repeat Simple_repeat 3 88 0 2 642 324 0 0 0 chr3 7518163 7518199 -152081584 + (TGGGGG)n Simple_repeat Simple_repeat 5 40 0 2 642 23 0 0 0 chr3 7518599 7518622 -152081161 + AT_rich Low_complexity Low_complexity 1 23 0 2 642 304 190 172 0 chr3 7518870 7518928 -152080855 + B3 SINE B2 5 72 -144 2 642 216 0 0 0 chr3 7519385 7519409 -152080374 + (TG)n Simple_repeat Simple_repeat 2 25 0 2 642 195 42 0 0 chr3 7519411 7519435 -152080348 + (CA)n Simple_repeat Simple_repeat 2 25 0 3 642 257 245 0 0 chr3 7519437 7519486 -152080297 + MER5A1 DNA MER1_type 115 163 -3 3 642 360 0 0 0 chr3 7521135 7521175 -152078608 + (TG)n Simple_repeat Simple_repeat 1 40 0 3 642 568 347 90 30 chr3 7521211 7521613 -152078170 - Lx9 LINE L1 -350 7294 6820 3 642 1163 48 0 14 chr3 7521615 7521763 -152078020 + B1_Mm SINE Alu 1 146 -1 3 642 236 53 0 26 chr3 7521768 7521807 -152077976 + (CAAAA)n Simple_repeat Simple_repeat 3 40 0 3 642 3953 167 33 6 chr3 7522242 7522939 -152076844 + RMER6D LTR ERVK 1 716 -4 3 642 3329 57 2 2 chr3 7525196 7525635 -152074148 + L1_Mus2 LINE L1 5993 6431 -135 3 642 25 31 0 0 chr3 7525895 7525927 -152073856 + AT_rich Low_complexity Low_complexity 1 32 0 3 642 419 311 103 53 chr3 7526937 7527239 -152072544 - L1M5 LINE L1 -3545 2601 2285 3 642 22 35 0 0 chr3 7527999 7528028 -152071755 + AT_rich Low_complexity Low_complexity 1 29 0 4 642 1002 73 5 27 chr3 7528868 7529052 -152070731 + (TG)n Simple_repeat Simple_repeat 1 180 0 4 642 493 305 80 57 chr3 7529809 7530073 -152069710 + B4A SINE B4 5 274 -18 4 642 213 307 0 13 chr3 7530086 7530162 -152069621 + (CATATA)n Simple_repeat Simple_repeat 6 80 0 4 642 239 305 0 12 chr3 7530171 7530254 -152069529 + ID4_ SINE ID 2 83 0 4 642 423 345 77 40 chr3 7530649 7530921 -152068862 + B4A SINE B4 1 282 -10 4 642 220 295 55 37 chr3 7530994 7531103 -152068680 + MIRb SINE MIR 1 111 -157 4 642 558 241 120 49 chr3 7532331 7532597 -152067186 - B4A SINE B4 -6 286 2 4 642 535 295 6 13 chr3 7532730 7532888 -152066895 - RSINE1 SINE B4 -6 159 3 4 642 225 0 0 0 chr3 7532968 7532993 -152066790 + (TTTTG)n Simple_repeat Simple_repeat 3 27 0 4 642 930 157 0 0 chr3 7533036 7533214 -152066569 + (CA)n Simple_repeat Simple_repeat 2 179 0 5 642 627 132 0 0 chr3 7533229 7533343 -152066440 + (CA)n Simple_repeat Simple_repeat 1 114 0 5 642 424 225 17 17 chr3 7534789 7534961 -152064822 + (TATG)n Simple_repeat Simple_repeat 3 174 0 5 642 422 254 228 0 chr3 7535027 7535141 -152064642 - B1_Mur2 SINE Alu -9 140 1 5 642 24 0 0 0 chr3 7536189 7536213 -152063570 + AT_rich Low_complexity Low_complexity 1 24 0 5 642 30 59 0 0 chr3 7537118 7537169 -152062614 + AT_rich Low_complexity Low_complexity 1 51 0 5 642 180 125 0 0 chr3 7537779 7537811 -152061972 + (T)n Simple_repeat Simple_repeat 1 32 0 5 642 278 292 56 9 chr3 7537842 7537949 -152061834 + MIR SINE MIR 20 131 -131 5 642 1421 43 0 0 chr3 7538540 7538727 -152061056 - L1Md_F2 LINE L1 -22 6560 6374 5 642 249 93 0 0 chr3 7538724 7538778 -152061005 + L1Md_F2 LINE L1 6528 6581 -1 5 642 237 65 0 0 chr3 7538811 7538842 -152060941 + (A)n Simple_repeat Simple_repeat 1 31 0 5 642 185 397 39 0 chr3 7539784 7539862 -152059921 - L4 LINE RTE -339 1690 1610 5 642 25 0 0 0 chr3 7540761 7540786 -152058997 + AT_rich Low_complexity Low_complexity 1 25 0 6 642 297 109 0 0 chr3 7541315 7541361 -152058422 + (CA)n Simple_repeat Simple_repeat 2 47 0 6 642 6548 126 21 5 chr3 7541401 7542872 -152056911 + Lx LINE L1 5150 6641 -13 6 642 31852 97 4 5 chr3 7542910 7548449 -152051334 + L1Md_F2 LINE L1 450 5941 -641 6 642 490 256 49 8 chr3 7548845 7548967 -152050816 - ETnERV2-int LTR ERVK -210 7196 7070 6 642 4723 75 9 3 chr3 7548971 7549602 -152050181 + L1Md_F2 LINE L1 5948 6582 0 6 642 742 246 20 25 chr3 7549797 7549993 -152049790 + RMER30 DNA MER1_type 7 201 -1 6 642 3216 48 5 2 chr3 7550215 7550610 -152049173 + MTA_Mm LTR MaLR 1 396 0 6 642 180 0 0 0 chr3 7551097 7551117 -152048666 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 6 642 10782 149 25 18 chr3 7553839 7556407 -152043376 - Lx LINE L1 0 6654 4078 6 642 540 0 0 0 chr3 7556407 7556467 -152043316 + (GA)n Simple_repeat Simple_repeat 2 61 0 7 642 7542 154 22 26 chr3 7556467 7556835 -152042948 - Lx LINE L1 -1800 4077 3694 6 642 20839 99 16 145 chr3 7556828 7560608 -152039175 - L1Md_F2 LINE L1 -8 6574 3284 7 642 1269 61 0 0 chr3 7560608 7560788 -152038995 + (TTC)n Simple_repeat Simple_repeat 1 180 0 7 642 20839 115 16 194 chr3 7560788 7561133 -152038650 - L1_Mm LINE L1 -2600 3283 3283 7 642 716 113 21 7 chr3 7561133 7561275 -152038508 - L1_Mus3 LINE L1 -6 6632 6489 7 642 20839 115 16 194 chr3 7561275 7561718 -152038065 - L1Md_F2 LINE L1 -2600 3283 2792 7 642 222 37 0 0 chr3 7561718 7561745 -152038038 + (TTG)n Simple_repeat Simple_repeat 1 27 0 7 642 20839 115 16 194 chr3 7561745 7563040 -152036743 - L1Md_F2 LINE L1 -3092 2791 1634 7 642 2813 12 3 0 chr3 7563040 7563361 -152036422 + RLTRETN_Mm LTR ERVK 1 322 0 7 642 41799 21 1 7 chr3 7563361 7568236 -152031547 + MMETn-int LTR ERVK 1 4844 0 7 642 2803 12 3 0 chr3 7568236 7568557 -152031226 + RLTRETN_Mm LTR ERVK 1 322 0 7 642 2610 88 18 0 chr3 7568557 7569063 -152030720 - L1VL4 LINE L1 -2281 1278 760 7 642 726 70 0 9 chr3 7569063 7569178 -152030605 - L1_Mus4 LINE L1 -5 6631 6518 7 642 322 252 48 48 chr3 7569340 7569444 -152030339 + MLT1N2 LTR MaLR 392 495 -67 7 642 197 353 50 40 chr3 7569778 7569976 -152029807 - L2a LINE L2 -118 3308 3109 8 642 535 326 29 6 chr3 7570135 7570308 -152029475 + ID_B1 SINE B4 40 216 -8 8 642 879 192 51 84 chr3 7570606 7570879 -152028904 + Lx2A LINE L1 6745 7008 0 8 642 335 231 0 0 chr3 7571254 7571319 -152028464 - PB1 SINE Alu -23 104 40 8 642 264 171 0 0 chr3 7571536 7571577 -152028206 - RLTR20D LTR ERVK -517 51 11 8 642 288 70 0 0 chr3 7573055 7573098 -152026685 + (GA)n Simple_repeat Simple_repeat 2 44 0 8 642 21 89 0 0 chr3 7573996 7574052 -152025731 + AT_rich Low_complexity Low_complexity 1 56 0 8 642 1032 92 28 0 chr3 7574228 7574370 -152025413 + B1_Mus2 SINE Alu 2 147 0 8 642 216 0 0 0 chr3 7574370 7574394 -152025389 + (TAA)n Simple_repeat Simple_repeat 1 24 0 8 642 324 0 0 0 chr3 7574394 7574430 -152025353 + (TTA)n Simple_repeat Simple_repeat 3 38 0 8 642 303 350 44 0 chr3 7574728 7574865 -152024918 - MIR SINE MIR -14 248 106 9 642 814 290 92 14 chr3 7575139 7575433 -152024350 + MER2 DNA MER2_type 13 329 -16 9 642 207 167 0 0 chr3 7576441 7576477 -152023306 + (TG)n Simple_repeat Simple_repeat 2 37 0 9 642 396 0 0 0 chr3 7576815 7576859 -152022924 + (TG)n Simple_repeat Simple_repeat 1 44 0 9 642 405 0 0 0 chr3 7577291 7577336 -152022447 + (TC)n Simple_repeat Simple_repeat 1 45 0 9 642 279 0 0 0 chr3 7577336 7577366 -152022417 + (CA)n Simple_repeat Simple_repeat 1 31 0 9 642 180 0 0 0 chr3 7578632 7578652 -152021131 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 9 642 1279 214 160 0 chr3 7578674 7579005 -152020778 - ORR1C2 LTR MaLR 0 384 1 9 642 4610 231 74 34 chr3 7579005 7580258 -152019525 - ORR1C2-int LTR MaLR 0 1370 67 9 642 307 370 27 0 chr3 7580574 7580720 -152019063 - RSINE1 SINE B4 -13 152 3 9 642 821 190 0 6 chr3 7580944 7581119 -152018664 + GA-rich Low_complexity Low_complexity 3 176 0 9 642 317 365 55 55 chr3 7581913 7582113 -152017670 - MLT1G LTR MaLR -391 200 1 1 642 1350 240 107 0 chr3 7583003 7583340 -152016443 + MTD LTR MaLR 18 390 -29 1 642 1347 258 82 17 chr3 7583664 7584141 -152015642 + L1MC1 LINE L1 5378 5885 -448 1 642 307 260 99 49 chr3 7584205 7584367 -152015416 + L1MC1 LINE L1 6031 6200 -133 1 642 21 82 0 0 chr3 7584440 7584489 -152015294 + AT_rich Low_complexity Low_complexity 1 49 0 1 642 537 300 8 0 chr3 7584543 7584673 -152015110 + ID_B1 SINE B4 88 218 -6 1 642 413 263 0 6 chr3 7584722 7584898 -152014885 + (CA)n Simple_repeat Simple_repeat 2 176 0 1 642 3315 239 44 42 chr3 7585126 7585172 -152014611 - Lx7 LINE L1 -893 6803 6761 1 642 2365 171 34 30 chr3 7585172 7585697 -152014086 - RLTR11A2 LTR ERVK 0 527 1 1 642 3315 239 44 42 chr3 7585697 7586559 -152013224 - Lx7 LINE L1 -936 6760 5893 1 642 3068 165 60 10 chr3 7586577 7587159 -152012624 + Lx2B LINE L1 6388 6998 -2 1 642 23 0 0 0 chr3 7588485 7588508 -152011275 + AT_rich Low_complexity Low_complexity 1 23 0 1 642 304 384 62 11 chr3 7589468 7589647 -152010136 - MIR3 SINE MIR -8 200 13 1 642 519 17 0 0 chr3 7589720 7589780 -152010003 + (CA)n Simple_repeat Simple_repeat 1 60 0 1 642 192 261 43 0 chr3 7589931 7589977 -152009806 - MIRc SINE MIR -146 122 75 1 642 471 73 0 0 chr3 7591588 7591656 -152008127 + (TG)n Simple_repeat Simple_repeat 1 68 0 1 642 489 268 88 98 chr3 7592752 7592967 -152006816 + MLT1A0 LTR MaLR 1 213 -152 1 642 289 294 0 11 chr3 7593373 7593466 -152006317 + CT-rich Low_complexity Low_complexity 2 93 0 1 642 4846 111 20 25 chr3 7593875 7594784 -152004999 - Lx LINE L1 -324 6330 5458 1 642 222 62 0 0 chr3 7594784 7594816 -152004967 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 1 642 975 101 14 0 chr3 7594818 7594957 -152004826 - B1_Mm SINE Alu -5 142 2 1 642 2884 133 12 99 chr3 7594957 7595048 -152004735 - Lx LINE L1 -426 5457 5367 1 642 4999 174 3 0 chr3 7595045 7595918 -152003865 + Lx LINE L1 4500 5375 -508 1 642 295 345 33 11 chr3 7596225 7596316 -152003467 - RSINE1 SINE B4 -35 130 38 1 642 942 58 0 0 chr3 7596330 7596451 -152003332 + (TTC)n Simple_repeat Simple_repeat 1 121 0 1 642 471 18 0 0 chr3 7597809 7597865 -152001918 + (TG)n Simple_repeat Simple_repeat 1 56 0 1 642 544 324 129 35 chr3 7598431 7599466 -152000317 + L1M2 LINE L1 1448 2580 -4269 1 642 303 269 75 11 chr3 7599647 7599741 -152000042 + PB1D10 SINE Alu 18 117 0 1 642 759 301 162 41 chr3 7599782 7600377 -151999406 + L1M2 LINE L1 2840 3504 -3341 1 642 311 0 26 0 chr3 7601040 7601079 -151998704 + (TA)n Simple_repeat Simple_repeat 2 41 0 1 642 240 207 227 25 chr3 7601080 7601283 -151998500 + L1M2 LINE L1 3756 3999 -2846 1 642 24 0 0 0 chr3 7601350 7601374 -151998409 + AT_rich Low_complexity Low_complexity 1 24 0 1 642 299 188 14 0 chr3 7601384 7601453 -151998330 + L1M2 LINE L1 3996 4065 -2780 1 642 732 310 14 9 chr3 7601627 7601842 -151997941 - B3 SINE B2 0 216 1 1 642 22 0 0 0 chr3 7601847 7601869 -151997914 + AT_rich Low_complexity Low_complexity 1 22 0 1 642 545 92 10 0 chr3 7601895 7601993 -151997790 + (TATG)n Simple_repeat Simple_repeat 2 100 0 1 80 1709 104 91 27 chr3 7602018 7602315 -151997468 - L1_Mus3 LINE L1 -2 6636 6321 1 643 487 265 77 43 chr3 7602633 7602956 -151996827 + L1MC LINE L1 4222 4555 -1591 1 643 700 107 0 0 chr3 7603061 7603173 -151996610 + L1_Mus1 LINE L1 6453 6564 -3 1 643 38 0 0 0 chr3 7605266 7605304 -151994479 + AT_rich Low_complexity Low_complexity 1 38 0 1 643 330 322 29 88 chr3 7605566 7605702 -151994081 + RMER10B LTR ERVL 271 398 0 1 643 252 167 0 0 chr3 7606553 7606601 -151993182 + CT-rich Low_complexity Low_complexity 3 50 0 1 643 251 122 0 39 chr3 7606850 7606901 -151992882 + RLTR19-int LTR ERVK 2138 2186 -3951 1 643 1563 257 72 46 chr3 7606917 7607630 -151992153 + MYSERV6-int LTR ERVK 8092 8681 -278 1 643 271 211 0 0 chr3 7607816 7607873 -151991910 + RLTR19-int LTR ERVK 3189 3245 -2892 1 643 25 0 0 0 chr3 7608013 7608038 -151991745 + AT_rich Low_complexity Low_complexity 1 25 0 1 643 339 119 0 0 chr3 7608186 7608253 -151991530 + (TCTG)n Simple_repeat Simple_repeat 2 68 0 1 643 207 0 0 0 chr3 7608787 7608810 -151990973 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 1 643 334 330 9 9 chr3 7608981 7609088 -151990695 + RMER10B LTR ERVL 269 375 -23 1 643 233 162 43 14 chr3 7609714 7609783 -151990000 + (TATAA)n Simple_repeat Simple_repeat 5 75 0 1 643 1278 197 59 20 chr3 7610412 7610769 -151989014 - Lx9 LINE L1 -1 7643 7273 1 643 258 32 0 0 chr3 7610839 7610870 -151988913 + (TA)n Simple_repeat Simple_repeat 1 31 0 1 643 1044 166 21 69 chr3 7611166 7611399 -151988384 + Lx3B LINE L1 6751 6972 -1 1 643 26 30 0 0 chr3 7611407 7611440 -151988343 + AT_rich Low_complexity Low_complexity 1 33 0 1 643 180 0 0 0 chr3 7613782 7613802 -151985981 + (A)n Simple_repeat Simple_repeat 1 20 0 1 643 180 319 95 65 chr3 7614229 7614397 -151985386 - MIRb SINE MIR -10 258 86 1 643 288 170 0 0 chr3 7615015 7615068 -151984715 + A-rich Low_complexity Low_complexity 1 53 0 1 643 215 326 51 31 chr3 7615757 7615855 -151983928 + PB1D7 SINE Alu 21 120 0 1 643 254 333 0 12 chr3 7615862 7615944 -151983839 + ID4 SINE ID 2 82 -1 1 643 393 22 0 0 chr3 7615956 7616002 -151983781 + (GGA)n Simple_repeat Simple_repeat 1 46 0 1 643 219 167 0 0 chr3 7616005 7616047 -151983736 + (TAG)n Simple_repeat Simple_repeat 1 42 0 1 643 265 206 18 27 chr3 7616045 7616155 -151983628 + GA-rich Low_complexity Low_complexity 3 111 0 1 643 294 50 0 0 chr3 7616571 7616611 -151983172 + (CA)n Simple_repeat Simple_repeat 2 41 0 1 643 441 0 0 0 chr3 7618985 7619034 -151980749 + (CA)n Simple_repeat Simple_repeat 1 49 0 1 643 388 301 97 43 chr3 7619348 7619605 -151980178 + B4 SINE B4 4 274 -18 1 643 24 0 0 0 chr3 7619657 7619681 -151980102 + AT_rich Low_complexity Low_complexity 1 24 0 1 643 309 68 0 0 chr3 7620100 7620144 -151979639 + (T)n Simple_repeat Simple_repeat 1 44 0 1 643 198 71 0 0 chr3 7623018 7623046 -151976737 + (TG)n Simple_repeat Simple_repeat 2 29 0 1 643 221 163 0 0 chr3 7623476 7623519 -151976264 + A-rich Low_complexity Low_complexity 3 45 0 1 643 446 281 203 0 chr3 7623921 7624049 -151975734 + RSINE1 SINE B4 12 165 0 1 643 202 146 0 59 chr3 7624064 7624115 -151975668 + (TTAAA)n Simple_repeat Simple_repeat 3 50 0 1 643 258 341 116 33 chr3 7624622 7624837 -151974946 + L2a LINE L2 3172 3404 -22 1 643 338 307 117 77 chr3 7625244 7625466 -151974317 - L1MEg LINE L1 -4928 1156 926 1 643 334 277 42 35 chr3 7626220 7626362 -151973421 - HAL1 LINE L1 -864 1643 1501 1 643 186 143 0 0 chr3 7626786 7626821 -151972962 + (GAAA)n Simple_repeat Simple_repeat 1 35 0 1 643 570 29 0 0 chr3 7626990 7627058 -151972725 + (AATAG)n Simple_repeat Simple_repeat 2 69 0 1 643 202 285 73 51 chr3 7627197 7627334 -151972449 - L2 LINE L2 -1851 1568 1429 1 643 1055 139 0 6 chr3 7627341 7627522 -151972261 + (GA)n Simple_repeat Simple_repeat 1 180 0 1 643 248 200 0 15 chr3 7629472 7629538 -151970245 + GA-rich Low_complexity Low_complexity 2 66 0 1 643 727 212 14 14 chr3 7630668 7630816 -151968967 + B1_Mur1 SINE Alu 2 149 0 1 643 304 243 18 64 chr3 7630986 7631096 -151968687 - B3 SINE B2 -1 215 111 1 643 373 331 13 34 chr3 7631108 7631282 -151968501 + MLT1A1 LTR MaLR 10 178 -230 1 643 530 333 60 45 chr3 7631363 7631850 -151967933 + Lx9 LINE L1 7120 7613 -31 1 643 927 339 81 5 chr3 7631872 7632266 -151967517 + MLT-int LTR MaLR 110 533 -1202 1 643 24 32 0 0 chr3 7632266 7632297 -151967486 + AT_rich Low_complexity Low_complexity 1 31 0 1 643 334 357 30 120 chr3 7632299 7632700 -151967083 + MLT-int LTR MaLR 689 1053 -682 1 643 26 0 0 0 chr3 7633204 7633230 -151966553 + AT_rich Low_complexity Low_complexity 1 26 0 1 643 219 364 89 20 chr3 7633749 7633782 -151966001 - RSINE1 SINE B4 -5 160 5 1 643 500 223 18 9 chr3 7633782 7633895 -151965888 - B3A SINE B2 -81 117 4 1 643 424 176 0 0 chr3 7633896 7633970 -151965813 - B3A SINE B2 -121 77 4 1 643 264 122 0 0 chr3 7634087 7634128 -151965655 + (TA)n Simple_repeat Simple_repeat 1 41 0 1 643 4528 115 233 1 chr3 7635295 7636167 -151963616 + L1_Mus2 LINE L1 1265 2338 -3545 1 643 290 54 0 0 chr3 7636166 7636203 -151963580 + L1_Mur2 LINE L1 5128 5164 -713 1 643 7092 91 5 6 chr3 7636202 7637737 -151962046 + L1_Mus2 LINE L1 5037 6566 0 1 643 32465 85 24 9 chr3 7637845 7643888 -151955895 - L1Md_F2 LINE L1 -14 6568 446 1 643 378 0 0 0 chr3 7643938 7643980 -151955803 + (TA)n Simple_repeat Simple_repeat 2 43 0 1 643 340 342 99 10 chr3 7644889 7645081 -151954702 - HAL1b LINE L1 -669 1340 1132 1 643 295 348 29 15 chr3 7645481 7645649 -151954134 - MIR SINE MIR -93 175 7 1 643 567 43 0 0 chr3 7646372 7646442 -151953341 + (TG)n Simple_repeat Simple_repeat 1 70 0 1 643 197 31 0 86 chr3 7647198 7647233 -151952550 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 1 643 2937 65 0 10 chr3 7648131 7648546 -151951237 + L1Md_F2 LINE L1 6183 6582 0 1 643 186 354 69 23 chr3 7648547 7648677 -151951106 + MIRb SINE MIR 121 256 -12 1 643 557 312 69 0 chr3 7649235 7649379 -151950404 + RSINE1 SINE B4 3 156 -9 1 643 6399 163 38 59 chr3 7649988 7650406 -151949377 + Lx5 LINE L1 5213 5603 -1447 1 643 4381 69 2 12 chr3 7650406 7650976 -151948807 + LTRIS2 LTR ERV1 1 564 0 1 643 6399 187 59 41 chr3 7650976 7651649 -151948134 + Lx5 LINE L1 5604 6305 -745 1 643 2580 111 15 8 chr3 7651649 7652049 -151947734 + RLTR9D LTR ERVK 1 403 0 1 643 6399 187 59 41 chr3 7652049 7652795 -151946988 + Lx5 LINE L1 6306 7050 0 1 643 2930 38 0 0 chr3 7653629 7653975 -151945808 + ORR1A0 LTR MaLR 1 346 0 1 643 7970 58 9 1 chr3 7654085 7655548 -151944235 - L1Md_F2 LINE L1 -7 6575 5103 1 643 2263 26 0 0 chr3 7656362 7656628 -151943155 - L1Md_F2 LINE L1 -652 5932 5667 1 643 372 21 0 0 chr3 7656623 7656670 -151943113 + L1Md_F2 LINE L1 5932 5978 -606 1 643 3498 65 0 9 chr3 7656670 7657133 -151942650 + L1Md_F2 LINE L1 6124 6582 0 1 643 342 208 26 0 chr3 7657737 7657814 -151941969 + ORR1E LTR MaLR 46 124 -235 1 643 881 275 0 0 chr3 7657850 7658061 -151941722 - B3 SINE B2 -5 211 1 1 643 248 346 78 8 chr3 7658076 7658204 -151941579 + ORR1E LTR MaLR 123 259 -111 1 643 440 263 17 17 chr3 7658577 7658693 -151941090 + B3A SINE B2 2 117 -81 2 643 528 122 0 0 chr3 7658785 7658867 -151940916 + (TA)n Simple_repeat Simple_repeat 1 82 0 2 643 511 267 30 0 chr3 7658872 7659003 -151940780 - B3 SINE B2 -21 195 61 2 643 368 343 157 6 chr3 7659605 7659933 -151939850 + Lx9 LINE L1 7073 7449 -195 2 643 1533 224 168 0 chr3 7659937 7660329 -151939454 - MT2A LTR ERVL 0 533 76 2 643 7540 173 63 56 chr3 7660329 7662164 -151937619 + L1_Mur3 LINE L1 3365 5213 -667 2 643 474 181 12 0 chr3 7662147 7662230 -151937553 + Lx6 LINE L1 6609 6692 -768 2 643 1641 249 86 32 chr3 7662219 7662486 -151937297 + Lx6 LINE L1 6987 7270 -190 2 643 222 37 0 0 chr3 7662486 7662513 -151937270 + (TTTTG)n Simple_repeat Simple_repeat 4 30 0 2 643 1641 249 86 32 chr3 7662513 7662685 -151937098 + Lx6 LINE L1 7271 7449 -11 2 643 804 21 0 0 chr3 7662691 7662785 -151936998 + (GGAA)n Simple_repeat Simple_repeat 3 96 0 2 643 298 218 0 0 chr3 7662808 7662863 -151936920 - MT2A LTR ERVL -475 58 4 2 643 24 32 0 0 chr3 7663079 7663110 -151936673 + AT_rich Low_complexity Low_complexity 1 31 0 2 643 5176 132 11 67 chr3 7663981 7664936 -151934847 - RLTR13D6 LTR ERVK 0 902 1 2 643 403 314 79 47 chr3 7665173 7665520 -151934263 - MTEa LTR MaLR 0 379 1 2 643 2908 63 199 12 chr3 7665556 7665987 -151933796 - RLTR1B LTR ERV1 0 512 1 2 643 943 170 30 143 chr3 7666344 7666707 -151933076 - RLTRETN_Mm LTR ERVK 0 322 1 2 643 383 51 31 78 chr3 7666709 7666773 -151933010 - ETnERV2-int LTR ERVK -3 7403 7343 2 643 761 222 134 19 chr3 7666773 7667127 -151932656 - RLTR13B1 LTR ERVK -353 549 118 2 643 7388 199 46 38 chr3 7667127 7670120 -151929663 - MMETn-int LTR ERVK -378 4466 2356 2 643 3776 165 66 32 chr3 7670349 7671339 -151928444 - MMETn-int LTR ERVK -3965 3441 2038 2 643 465 171 136 8 chr3 7671364 7671482 -151928301 - MMETn-int LTR ERVK -5321 2085 1953 2 643 2330 169 59 92 chr3 7671478 7672473 -151927310 - MMETn-int LTR ERVK -5605 1801 1 2 643 1054 191 58 71 chr3 7672474 7672837 -151926946 - RLTRETN_Mm LTR ERVK 0 409 1 2 643 23 0 0 0 chr3 7672965 7672988 -151926795 + AT_rich Low_complexity Low_complexity 1 23 0 2 643 705 237 14 7 chr3 7673065 7673205 -151926578 + ID_B1 SINE B4 84 224 0 2 643 216 0 0 0 chr3 7674523 7674547 -151925236 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2 643 429 86 65 0 chr3 7674548 7674620 -151925163 - B1_Mur4 SINE Alu -11 139 61 2 643 516 68 0 0 chr3 7674841 7674914 -151924869 + (CA)n Simple_repeat Simple_repeat 2 74 0 2 643 851 172 6 37 chr3 7674919 7675076 -151924707 - ORR1B1 LTR MaLR -15 379 228 2 643 2086 105 3 9 chr3 7675076 7675394 -151924389 + IAPLTR2b LTR ERVK 1 316 -11 2 643 588 185 43 43 chr3 7675401 7675542 -151924241 - ORR1B1 LTR MaLR -156 211 71 2 643 860 166 95 6 chr3 7676177 7676335 -151923448 - B2_Mm2 SINE B2 -12 183 12 2 643 6264 92 36 0 chr3 7676335 7677248 -151922535 + L1_Mus1 LINE L1 5622 6567 0 2 643 351 295 26 92 chr3 7678224 7678377 -151921406 + B1F SINE Alu 1 143 -6 2 643 2776 90 15 5 chr3 7678616 7679009 -151920774 + Lx3_Mus LINE L1 6612 7008 -1 2 643 507 29 0 28 chr3 7680254 7680326 -151919457 - L1Md_F2 LINE L1 -12 6570 6501 2 643 219 69 0 0 chr3 7682195 7682224 -151917559 + (TCTG)n Simple_repeat Simple_repeat 2 30 0 2 643 670 348 13 18 chr3 7682257 7682482 -151917301 - B4 SINE B4 -2 290 67 2 643 3918 147 48 22 chr3 7682486 7683209 -151916574 + RLTR13D6 LTR ERVK 1 742 -160 2 643 392 149 136 87 chr3 7683190 7683293 -151916490 + RLTR13D6 LTR ERVK 701 808 0 2 643 198 254 84 56 chr3 7683472 7683543 -151916240 + L3b LINE CR1 316 388 -94 2 643 3549 61 43 2 chr3 7683916 7684379 -151915404 + RLTR45 LTR ERVK 1 482 0 2 643 272 250 73 42 chr3 7686523 7686619 -151913164 - MLT1B LTR MaLR 0 390 292 2 643 453 36 0 0 chr3 7687006 7687061 -151912722 + (TTTC)n Simple_repeat Simple_repeat 2 56 0 2 643 1070 97 0 0 chr3 7687094 7687239 -151912544 - B1_Mus2 SINE Alu 0 147 3 2 643 538 301 67 17 chr3 7687313 7687492 -151912291 + B3 SINE B2 28 215 -1 2 643 561 163 62 183 chr3 7687980 7688220 -151911563 - RMER1B Other Other -71 995 785 2 643 4634 82 5 2 chr3 7688713 7689337 -151910446 + L1_Mus3 LINE L1 6010 6635 -3 2 643 216 67 0 0 chr3 7690001 7690031 -151909752 + (A)n Simple_repeat Simple_repeat 1 30 0 2 643 3088 64 8 2 chr3 7690172 7690566 -151909217 - MTA_Mm LTR MaLR 0 396 1 2 643 883 288 50 11 chr3 7690840 7691121 -151908662 - B4A SINE B4 0 292 1 2 643 14322 60 2 0 chr3 7691344 7693977 -151905806 - L1Md_F2 LINE L1 -1 6581 3943 2 643 908 223 45 5 chr3 7695316 7695514 -151904269 + B3 SINE B2 6 211 -5 2 643 25 31 0 0 chr3 7695524 7695556 -151904227 + AT_rich Low_complexity Low_complexity 1 32 0 2 643 29 0 0 0 chr3 7695738 7695767 -151904016 + AT_rich Low_complexity Low_complexity 1 29 0 2 643 5403 59 0 6 chr3 7695857 7696554 -151903229 + L1Md_F3 LINE L1 5889 6581 -3 2 643 2046 281 79 19 chr3 7696714 7697490 -151902293 + Lx8 LINE L1 6298 7119 -354 2 643 407 68 17 0 chr3 7697490 7697549 -151902234 + (CA)n Simple_repeat Simple_repeat 2 61 0 2 643 224 322 164 28 chr3 7697699 7697913 -151901870 + MIR SINE MIR 20 262 0 2 643 959 9 17 0 chr3 7698411 7698526 -151901257 + (TTTC)n Simple_repeat Simple_repeat 3 119 0 2 643 1910 283 94 5 chr3 7700544 7701161 -151898622 - Lx6 LINE L1 -9 7451 6780 2 643 2640 248 69 14 chr3 7701162 7701949 -151897834 - Lx6 LINE L1 -843 6617 5788 2 643 3513 199 27 38 chr3 7701940 7702839 -151896944 - Lx6 LINE L1 -383 5497 4609 2 643 389 115 13 0 chr3 7703676 7703754 -151896029 + (CA)n Simple_repeat Simple_repeat 2 80 0 2 643 247 206 168 0 chr3 7703993 7704100 -151895683 + L1MC3 LINE L1 4282 4406 -1740 2 643 612 337 35 28 chr3 7704106 7704503 -151895280 + Lx8 LINE L1 6831 7230 -243 2 643 235 67 43 22 chr3 7704505 7704551 -151895232 + (TTTTG)n Simple_repeat Simple_repeat 2 48 0 2 643 335 253 108 68 chr3 7704773 7704871 -151894912 + L1MC3 LINE L1 4940 5047 -1099 2 643 1166 148 108 0 chr3 7704871 7705074 -151894709 + URR1A DNA MER1_type 2 226 0 2 643 335 253 108 68 chr3 7705074 7705258 -151894525 + L1MC3 LINE L1 5048 5250 -896 2 643 3289 70 7 0 chr3 7705258 7705675 -151894108 - L1_Mus1 LINE L1 0 6567 6148 2 643 504 296 119 38 chr3 7705675 7706286 -151893497 + L1MC3 LINE L1 5251 5904 -1881 2 643 364 321 148 36 chr3 7706355 7706849 -151892934 + L1MC3 LINE L1 6041 6589 -1196 2 643 550 350 92 7 chr3 7706881 7707152 -151892631 - MLT1A0 LTR MaLR -61 304 11 2 643 418 253 128 9 chr3 7707384 7707603 -151892180 + L1MC3 LINE L1 6897 7141 -644 2 643 390 332 97 25 chr3 7707804 7708042 -151891741 + L1MC3 LINE L1 7443 7697 -88 2 643 183 42 0 0 chr3 7708439 7708463 -151891320 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 2 643 551 277 23 8 chr3 7710220 7710351 -151889432 - B1F1 SINE Alu -1 148 16 2 643 348 287 88 0 chr3 7710588 7710724 -151889059 + B1F SINE Alu 2 149 0 2 643 483 100 0 0 chr3 7711270 7711340 -151888443 + (TAAA)n Simple_repeat Simple_repeat 2 71 0 2 643 302 67 0 22 chr3 7711437 7711483 -151888300 + (TTA)n Simple_repeat Simple_repeat 1 45 0 2 643 7138 122 91 7 chr3 7711491 7712751 -151887032 - Lx3B LINE L1 -7 6966 5602 2 643 234 0 0 0 chr3 7712917 7712943 -151886840 + (TTCA)n Simple_repeat Simple_repeat 1 26 0 2 643 1283 181 61 30 chr3 7712943 7713240 -151886543 - Lx5 LINE L1 -16 7034 6729 2 643 808 164 11 0 chr3 7713260 7713400 -151886383 + B2_Mm2 SINE B2 4 155 -61 2 643 351 234 71 65 chr3 7713466 7713495 -151886288 - CYRA11_Mm Unknown Y-chromosome -274 343 174 2 643 867 115 7 7 chr3 7713495 7713635 -151886148 + URR1B DNA MER1_type 83 222 -3 2 643 6491 45 8 3 chr3 7714177 7715024 -151884759 - L1Md_F2 LINE L1 -1 6581 5731 2 643 5920 80 20 14 chr3 7715022 7716191 -151883592 + L1Md_A LINE L1 946 2095 -3788 2 643 898 255 30 25 chr3 7716631 7716832 -151882951 - B3 SINE B2 -14 202 1 2 643 1412 276 52 46 chr3 7716849 7717309 -151882474 + RCHARR1 DNA MER1_type 29 491 -483 2 643 499 250 0 0 chr3 7717337 7717437 -151882346 + B3 SINE B2 19 118 -98 2 643 528 310 30 77 chr3 7717457 7717625 -151882158 - RSINE1 SINE B4 0 165 6 2 643 577 300 50 17 chr3 7717774 7718015 -151881768 + RCHARR1 DNA MER1_type 689 937 -37 2 643 258 156 0 0 chr3 7718041 7718086 -151881697 + (TCTA)n Simple_repeat Simple_repeat 3 47 0 2 643 371 381 16 0 chr3 7718094 7718220 -151881563 - RSINE1 SINE B4 0 165 38 2 643 564 81 0 0 chr3 7718590 7718677 -151881106 + (TC)n Simple_repeat Simple_repeat 2 88 0 2 643 243 0 0 0 chr3 7718677 7718704 -151881079 + (CA)n Simple_repeat Simple_repeat 1 27 0 2 643 711 309 108 20 chr3 7718860 7719111 -151880672 + B4A SINE B4 10 282 -10 2 643 273 274 0 0 chr3 7719954 7720016 -151879767 + (TG)n Simple_repeat Simple_repeat 2 63 0 2 643 1407 34 0 2 chr3 7720110 7720313 -151879470 + L1Md_F2 LINE L1 5555 5755 -827 2 643 4806 132 75 7 chr3 7721806 7722635 -151877148 + RMER17D LTR ERVK 3 887 -2 2 643 285 214 133 11 chr3 7723713 7723803 -151875980 + L1MD LINE L1 5493 5593 -649 2 643 242 322 110 20 chr3 7724241 7724387 -151875396 + ORR1C2 LTR MaLR 66 224 -160 2 643 26464 121 31 2 chr3 7724504 7730166 -151869617 - L1_Mus2 LINE L1 -1 6565 726 2 643 359 273 16 8 chr3 7730171 7730293 -151869490 - L1_Mus2 LINE L1 -5823 793 671 2 643 270 241 32 30 chr3 7730357 7730517 -151869266 - L1VL1 LINE L1 -6065 357 84 2 643 6260 142 14 42 chr3 7730697 7731928 -151867855 - Lx4B LINE L1 -824 5053 3858 2 643 3593 177 40 4 chr3 7731926 7732669 -151867114 + Lx4B LINE L1 5050 5819 -58 2 80 36034 18 3 7 chr3 7732720 7738127 -151861656 + L1Md_A LINE L1 205 5586 -297 2 644 8770 17 0 0 chr3 7738128 7739121 -151860662 + L1Md_A LINE L1 5588 6580 -2 2 644 2884 224 48 13 chr3 7739163 7739874 -151859909 + Lx4B LINE L1 6015 6750 -308 2 644 25 0 0 0 chr3 7739898 7739923 -151859860 + AT_rich Low_complexity Low_complexity 1 25 0 2 644 189 351 172 5 chr3 7739964 7740156 -151859627 + MIRb SINE MIR 27 250 -18 2 644 32293 72 5 15 chr3 7740216 7746727 -151853056 - L1Md_F2 LINE L1 -12 6570 124 2 644 451 319 50 54 chr3 7746970 7747212 -151852571 + ORR1E LTR MaLR 1 241 -118 2 644 1452 285 73 42 chr3 7747245 7747725 -151852058 + MTE-int LTR MaLR 3 497 -1083 2 644 704 341 68 63 chr3 7747838 7748248 -151851535 + MTE-int LTR MaLR 645 1056 -524 2 644 428 335 18 49 chr3 7748569 7748792 -151850991 - ERVL-B4-int LTR ERVL -3093 2621 2406 2 644 1220 338 45 15 chr3 7748887 7749599 -151850184 - ERVL-B4-int LTR ERVL -3453 2261 1529 2 644 4526 50 1 0 chr3 7750873 7751499 -151848284 - L1Md_F2 LINE L1 -412 6170 5542 2 644 3679 68 4 6 chr3 7751499 7751986 -151847797 + L1Md_F2 LINE L1 6095 6580 -2 2 644 240 345 9 9 chr3 7752189 7752303 -151847480 + (CATA)n Simple_repeat Simple_repeat 1 114 0 2 644 254 278 14 0 chr3 7752225 7752297 -151847486 + (CATATA)n Simple_repeat Simple_repeat 6 78 0 2 644 28 86 0 0 chr3 7752385 7752455 -151847328 + AT_rich Low_complexity Low_complexity 1 70 0 2 644 461 367 104 9 chr3 7753237 7753297 -151846486 + MLT1E3 LTR MaLR 368 427 -197 3 644 576 0 0 0 chr3 7753297 7753361 -151846422 + (CAAAA)n Simple_repeat Simple_repeat 2 65 0 3 644 461 367 104 9 chr3 7753361 7753531 -151846252 + MLT1E3 LTR MaLR 428 619 -5 3 644 1556 230 181 11 chr3 7753578 7753951 -151845832 + RLTR20C LTR ERVK 1 448 -86 3 644 375 23 0 0 chr3 7753951 7753995 -151845788 + (TG)n Simple_repeat Simple_repeat 2 45 0 3 644 1556 230 181 11 chr3 7753995 7754074 -151845709 + RLTR20C LTR ERVK 449 529 -5 3 644 6436 141 17 11 chr3 7754256 7755296 -151844487 - Lx4A LINE L1 -4 7054 6009 3 644 676 323 115 46 chr3 7755453 7755826 -151843957 + LTR16A LTR ERVL 1 399 -52 3 644 1053 106 0 0 chr3 7756342 7756522 -151843261 + (TG)n Simple_repeat Simple_repeat 1 180 0 3 644 727 304 68 38 chr3 7756568 7756804 -151842979 + B4A SINE B4 20 262 -30 3 644 459 0 0 0 chr3 7756812 7756863 -151842920 + (CA)n Simple_repeat Simple_repeat 2 52 0 3 644 213 39 0 0 chr3 7756863 7756888 -151842895 + (TA)n Simple_repeat Simple_repeat 2 27 0 3 644 24 100 0 0 chr3 7757078 7757158 -151842625 + AT_rich Low_complexity Low_complexity 1 80 0 3 644 1698 259 77 4 chr3 7757299 7757753 -151842030 - Lx6 LINE L1 -4 7456 6970 3 644 423 281 172 25 chr3 7757876 7758080 -151841703 + BLACKJACK DNA AcHobo 44 277 -2667 3 644 22 0 0 0 chr3 7758554 7758576 -151841207 + AT_rich Low_complexity Low_complexity 1 22 0 3 644 1323 228 66 10 chr3 7760036 7760554 -151839229 + Lx2B LINE L1 6091 6969 -31 3 644 186 71 0 0 chr3 7760554 7760582 -151839201 + (TAAA)n Simple_repeat Simple_repeat 1 28 0 3 644 315 0 0 0 chr3 7761263 7761298 -151838485 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 3 644 297 100 0 0 chr3 7761769 7761819 -151837964 + (A)n Simple_repeat Simple_repeat 1 50 0 3 644 3887 259 88 79 chr3 7762342 7762597 -151837186 - Lx7 LINE L1 -8 7688 7423 3 644 279 0 0 0 chr3 7762597 7762628 -151837155 + (CA)n Simple_repeat Simple_repeat 2 32 0 3 644 3887 246 75 68 chr3 7762628 7764652 -151835131 - Lx7 LINE L1 -274 7422 5386 3 644 238 228 144 34 chr3 7764697 7764815 -151834968 + L1M5 LINE L1 5792 5922 -242 3 644 231 159 28 28 chr3 7764815 7764886 -151834897 + CT-rich Low_complexity Low_complexity 2 72 0 3 644 443 283 32 32 chr3 7765094 7765218 -151834565 - B1_Mm SINE Alu -2 145 22 3 644 250 265 13 105 chr3 7765157 7765233 -151834550 - MT2B LTR ERVL -361 240 172 3 644 2315 280 80 31 chr3 7765605 7767093 -151832690 - Lx9 LINE L1 -485 7159 5437 3 644 300 261 75 11 chr3 7767430 7767523 -151832260 - Lx9 LINE L1 -422 5425 5327 3 644 7077 83 1 28 chr3 7768250 7769772 -151830011 - L1_Mus2 LINE L1 0 6566 5106 3 644 6238 93 2 0 chr3 7769774 7770670 -151829113 + L1_Mus1 LINE L1 5669 6566 -1 3 644 21 0 0 0 chr3 7770776 7770797 -151828986 + AT_rich Low_complexity Low_complexity 1 21 0 3 644 18101 127 3 3 chr3 7770816 7773843 -151825940 - L1_Mus2 LINE L1 -951 4932 1908 3 644 2963 38 0 47 chr3 7773843 7774226 -151825557 - RLTR10B2 LTR ERVK 0 365 1 3 644 4048 113 8 1 chr3 7774226 7774909 -151824874 - IAPEY3-int LTR ERVK 0 7680 6965 3 644 1276 120 120 0 chr3 7774909 7775134 -151824649 - IAP-d-int LTR ERVK -1287 5255 5004 3 644 354 318 31 31 chr3 7775148 7775426 -151824357 - IAPEY3-int LTR ERVK -6017 1564 1316 3 644 2558 54 27 0 chr3 7775566 7775898 -151823885 - RLTR10-int LTR ERVK -995 992 652 3 644 2710 42 8 175 chr3 7775905 7776373 -151823410 - RLTR10 LTR ERVK 0 390 1 3 644 16072 22 2 13 chr3 7776375 7778341 -151821442 - RLTR10-int LTR ERVK -3 1984 41 3 644 2710 42 8 175 chr3 7778351 7778819 -151820964 - RLTR10 LTR ERVK 0 390 1 3 644 305 133 0 0 chr3 7778821 7778866 -151820917 - IAP-d-int LTR ERVK -6405 137 93 3 644 425 135 47 19 chr3 7778869 7778975 -151820808 + CT-rich Low_complexity Low_complexity 3 111 0 3 644 201 276 0 17 chr3 7778979 7779038 -151820745 + T-rich Low_complexity Low_complexity 3 60 0 3 644 359 23 0 0 chr3 7779081 7779124 -151820659 - RLTR10-int LTR ERVK -7314 267 225 3 644 257 264 0 0 chr3 7779124 7779177 -151820606 - RLTR27 LTR ERVK -34 275 223 3 644 1193 49 0 24 chr3 7779177 7779343 -151820440 - RLTR10-int LTR ERVK -1785 202 41 3 644 2778 21 0 35 chr3 7779367 7779715 -151820068 - RLTR10B2 LTR ERVK -29 336 1 3 644 3955 146 21 54 chr3 7779716 7780959 -151818824 - L1Md_F LINE L1 -2002 1815 628 3 644 405 282 19 6 chr3 7780938 7781095 -151818688 - L1Md_F LINE L1 -5783 736 578 3 644 282 248 34 182 chr3 7781182 7781330 -151818453 - L1VL1 LINE L1 -6071 351 226 3 644 604 206 228 0 chr3 7781582 7781766 -151818017 + URR1A DNA MER1_type 1 226 0 3 644 219 202 0 0 chr3 7781847 7781926 -151817857 + (CAGAGA)n Simple_repeat Simple_repeat 6 84 0 3 644 234 0 0 0 chr3 7782522 7782548 -151817235 + (A)n Simple_repeat Simple_repeat 1 26 0 3 644 7038 82 3 6 chr3 7783034 7784223 -151815560 - L1_Mus2 LINE L1 0 6566 5383 3 644 355 219 145 23 chr3 7784228 7784359 -151815424 - L2 LINE L2 -1538 1881 1735 3 644 491 62 0 0 chr3 7784396 7784460 -151815323 + L1_Mus2 LINE L1 5817 5880 -758 3 644 2168 100 13 0 chr3 7784460 7784770 -151815013 + L1_Mus2 LINE L1 6252 6565 -1 3 644 527 107 0 12 chr3 7784803 7784888 -151814895 + (GGA)n Simple_repeat Simple_repeat 2 85 0 3 644 462 275 159 22 chr3 7785565 7785747 -151814036 - B3 SINE B2 -7 209 3 3 644 656 282 79 53 chr3 7786106 7786612 -151813171 - L1MC1 LINE L1 -2 6331 5813 3 644 698 250 90 60 chr3 7786616 7786850 -151812933 - B4 SINE B4 0 292 52 3 644 279 229 24 0 chr3 7787020 7787103 -151812680 - L1MC LINE L1 -2701 3445 3361 3 644 356 244 53 30 chr3 7787129 7787298 -151812485 + (TATATG)n Simple_repeat Simple_repeat 5 177 0 3 644 658 320 47 140 chr3 7787371 7787857 -151811926 + RLTR17 LTR ERVK 125 565 -127 3 644 336 253 20 81 chr3 7787896 7787995 -151811788 + RLTR31_Mur LTR ERVK 461 553 0 3 644 255 278 161 24 chr3 7788218 7788648 -151811135 - L1MC LINE L1 -2775 3371 2880 3 644 5355 33 8 3 chr3 7788648 7789284 -151810499 + L1Md_F2 LINE L1 5942 6580 -2 3 644 255 278 161 24 chr3 7789284 7789344 -151810439 - L1MC LINE L1 -3267 2879 2816 3 644 697 118 0 0 chr3 7790584 7790686 -151809097 + ORR1D1 LTR MaLR 1 102 -272 3 644 2846 9 3 0 chr3 7790686 7791007 -151808776 - RLTRETN_Mm LTR ERVK 0 322 1 3 644 39509 24 2 6 chr3 7791007 7795873 -151803910 - MMETn-int LTR ERVK 0 4844 1 3 644 2817 16 3 0 chr3 7795873 7796194 -151803589 - RLTRETN_Mm LTR ERVK 0 322 1 3 644 1193 204 61 27 chr3 7796196 7796458 -151803325 + ORR1D1 LTR MaLR 99 369 -5 3 644 352 257 0 9 chr3 7796695 7796801 -151802982 + (TA)n Simple_repeat Simple_repeat 1 105 0 3 644 23 33 0 0 chr3 7797542 7797572 -151802211 + AT_rich Low_complexity Low_complexity 1 30 0 3 644 753 280 31 134 chr3 7798348 7798736 -151801047 + MTE2a LTR MaLR 1 348 -31 3 644 406 265 101 14 chr3 7798749 7798880 -151800903 - B3 SINE B2 0 216 74 3 644 4007 146 106 42 chr3 7798880 7799802 -151799981 - RMER17B LTR ERVK 0 958 1 3 644 250 176 58 19 chr3 7799809 7799861 -151799922 - B3 SINE B2 -162 54 1 3 644 8206 131 10 5 chr3 7800742 7802097 -151797686 + Lx2 LINE L1 5660 6995 -2 3 644 353 282 89 68 chr3 7802490 7802680 -151797103 - Tigger7 DNA MER2_type -6 2485 2293 3 644 537 348 97 46 chr3 7802662 7803011 -151796772 - Tigger7 DNA MER2_type -2034 457 91 3 644 258 169 34 0 chr3 7803404 7803463 -151796320 + (TTAGGG)n Simple_repeat Simple_repeat 6 66 0 3 644 247 346 47 19 chr3 7803466 7803572 -151796211 + MER74A LTR ERVL 34 142 -416 3 644 487 353 92 49 chr3 7804134 7804653 -151795130 - MLT2E LTR ERVL -4 624 40 3 644 4359 160 63 19 chr3 7804924 7805763 -151794020 - RLTR13D6 LTR ERVK -26 876 1 3 644 21 57 0 0 chr3 7805785 7805820 -151793963 + AT_rich Low_complexity Low_complexity 1 35 0 3 644 333 164 0 0 chr3 7806254 7806327 -151793456 + T-rich Low_complexity Low_complexity 1 73 0 3 644 8560 122 7 4 chr3 7806334 7807695 -151792088 - Lx3A LINE L1 -24 6957 5592 3 644 6465 68 1 2 chr3 7807696 7808561 -151791222 - L1Md_F2 LINE L1 -128 6454 5591 3 644 251 91 0 0 chr3 7808555 7808588 -151791195 + L1_Mur2 LINE L1 5106 5138 -739 3 644 7740 141 10 15 chr3 7808586 7810852 -151788931 + L1_Mus4 LINE L1 4388 6636 0 3 644 3556 95 53 12 chr3 7810911 7811333 -151788450 - L1_Mur1 LINE L1 -1206 4680 4233 3 644 2120 114 85 106 chr3 7811333 7811825 -151787958 + RLTR45 LTR ERVK 1 482 0 3 644 3556 95 53 12 chr3 7811825 7812000 -151787783 - L1_Mur1 LINE L1 -1654 4232 4058 3 644 21 36 0 0 chr3 7813746 7813774 -151786009 + AT_rich Low_complexity Low_complexity 1 28 0 3 644 255 103 0 0 chr3 7814466 7814505 -151785278 + (A)n Simple_repeat Simple_repeat 1 39 0 3 644 2109 200 17 24 chr3 7814508 7815068 -151784715 + L1Md_F LINE L1 625 1136 -5521 3 644 1414 131 15 0 chr3 7815066 7815333 -151784450 + L1Md_F LINE L1 1871 2141 -3742 3 644 2549 105 10 0 chr3 7815339 7815757 -151784026 + MusHAL1 LINE L1 1645 2066 -646 3 644 22 0 0 0 chr3 7816273 7816295 -151783488 + AT_rich Low_complexity Low_complexity 1 22 0 3 644 576 221 47 0 chr3 7816772 7816899 -151782884 - Lx6 LINE L1 -240 5640 5508 3 644 1159 283 220 12 chr3 7816903 7817499 -151782284 + Lx6 LINE L1 5652 6576 -884 3 644 937 352 35 21 chr3 7817530 7817965 -151781818 + Lx5 LINE L1 6506 6946 -104 3 644 2186 48 11 14 chr3 7818116 7818392 -151781391 - L1Md_F2 LINE L1 -10 6572 6298 3 644 561 262 134 12 chr3 7818437 7818684 -151781099 + RLTR10A LTR ERVK 135 411 0 3 644 5738 44 0 1 chr3 7818684 7819505 -151780278 - L1Md_F2 LINE L1 -279 6303 5484 3 644 325 375 0 35 chr3 7819512 7819628 -151780155 - RSINE1 SINE B4 -49 116 5 3 644 705 277 133 41 chr3 7819647 7820113 -151779670 + MLT2B2 LTR ERVL 4 512 -3 3 644 2896 187 58 30 chr3 7820740 7821030 -151778753 - L1_Mus3 LINE L1 -3867 2013 1701 3 644 1621 214 5 59 chr3 7821030 7821417 -151778366 + ORR1B2 LTR MaLR 1 366 -1 3 644 2896 168 41 43 chr3 7821417 7822136 -151777647 - L1_Mus3 LINE L1 -4180 1700 1087 3 644 4935 83 17 11 chr3 7822136 7822844 -151776939 + L1_Mus3 LINE L1 5920 6631 -7 3 644 2536 281 63 16 chr3 7822869 7822967 -151776816 - L1_Mur3 LINE L1 -6658 1054 960 3 644 4608 63 3 7 chr3 7822967 7823554 -151776229 - LTRIS_Mus LTR ERV1 -2 585 1 3 644 2536 281 63 16 chr3 7823554 7824379 -151775404 - L1_Mur3 LINE L1 -6753 959 88 3 644 486 0 0 0 chr3 7824770 7824824 -151774959 + (TTA)n Simple_repeat Simple_repeat 1 54 0 3 644 257 337 11 0 chr3 7824826 7824921 -151774862 - ORSL DNA Tip100 -176 99 4 3 644 297 0 0 0 chr3 7825236 7825269 -151774514 + (TTG)n Simple_repeat Simple_repeat 1 33 0 3 644 27 0 0 0 chr3 7825748 7825775 -151774008 + AT_rich Low_complexity Low_complexity 1 27 0 3 644 231 61 0 0 chr3 7826146 7826179 -151773604 + (A)n Simple_repeat Simple_repeat 1 33 0 3 644 648 332 88 22 chr3 7826492 7826952 -151772831 + L1MCa LINE L1 2237 2730 -3591 3 644 463 366 60 21 chr3 7827239 7827524 -151772259 - MLT1A0 LTR MaLR -53 312 17 3 644 20181 141 30 27 chr3 7827628 7829388 -151770395 + L1Md_F LINE L1 208 1969 -3914 3 644 285 29 0 0 chr3 7829388 7829422 -151770361 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 3 644 20181 95 4 4 chr3 7829422 7831758 -151768025 + L1Md_F LINE L1 1970 4303 -1580 3 644 14250 94 56 0 chr3 7831761 7834196 -151765587 + L1Md_F2 LINE L1 2032 4590 -1293 4 644 16146 27 0 2 chr3 7834204 7836152 -151763631 + RLTR10-int LTR ERVK 41 1984 -3 4 644 3168 41 2 37 chr3 7836154 7836558 -151763225 + RLTR10 LTR ERVK 1 390 0 4 644 7202 75 2 1 chr3 7836558 7837559 -151762224 + L1Md_F2 LINE L1 4585 5586 -297 4 644 7546 73 8 1 chr3 7837559 7838546 -151761237 + L1Md_F2 LINE L1 5587 6580 -2 4 644 189 0 0 0 chr3 7838632 7838653 -151761130 + (A)n Simple_repeat Simple_repeat 1 21 0 4 644 283 318 60 45 chr3 7839257 7839458 -151760325 - MLT2C1 LTR ERVL -140 257 54 4 644 9320 127 3 11 chr3 7839471 7841343 -151758440 + L1Md_F LINE L1 116 1969 -3914 4 644 201 39 0 0 chr3 7841343 7841369 -151758414 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 4 644 9320 80 6 1 chr3 7841369 7841979 -151757804 + L1Md_F LINE L1 1970 2585 -3298 4 644 388 56 0 0 chr3 7841977 7842031 -151757752 - L1_Mm LINE L1 -4373 1510 1457 4 644 547 38 12 36 chr3 7842054 7842137 -151757646 + (TC)n Simple_repeat Simple_repeat 1 81 0 4 644 1071 71 43 0 chr3 7842297 7842438 -151757345 + B1_Mm SINE Alu 1 147 0 4 644 219 36 0 0 chr3 7842453 7842481 -151757302 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 4 644 3318 254 86 10 chr3 7842483 7843115 -151756668 - Lx6 LINE L1 -24 7436 6763 4 644 195 42 0 0 chr3 7843115 7843139 -151756644 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 4 644 3318 254 86 10 chr3 7843139 7843470 -151756313 - Lx6 LINE L1 -698 6762 6401 4 644 335 171 73 0 chr3 7843550 7843632 -151756151 + Lx9 LINE L1 7554 7641 -3 4 644 5696 75 4 0 chr3 7843972 7844714 -151755069 + L1_Mus1 LINE L1 5823 6567 0 4 644 2194 139 11 11 chr3 7844803 7845159 -151754624 - Lx3_Mus LINE L1 -4 7005 6650 4 644 3480 102 4 2 chr3 7845159 7845681 -151754102 + Lx3_Mus LINE L1 6115 6637 -372 4 644 14520 123 8 2 chr3 7846135 7849348 -151750435 - L1_Mus2 LINE L1 0 6566 3334 4 644 5276 81 5 5 chr3 7849352 7850111 -151749672 + L1_Mm LINE L1 4618 5376 -507 4 644 555 68 0 43 chr3 7850137 7850229 -151749554 + L1Md_F2 LINE L1 6483 6570 -12 4 644 24918 86 3 1 chr3 7850236 7853139 -151746644 - L1Md_F LINE L1 -1007 4876 1968 4 644 189 74 0 0 chr3 7853139 7853166 -151746617 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 4 644 24918 75 2 5 chr3 7853166 7854727 -151745056 - L1Md_F LINE L1 -3916 1967 406 4 644 2714 60 0 0 chr3 7854727 7855059 -151744724 + IAPEY3_LTR LTR ERVK 1 332 0 4 644 6558 65 1 9 chr3 7855059 7855105 -151744678 - L1Md_F LINE L1 -6211 405 365 4 644 8178 129 5 0 chr3 7855105 7856479 -151743304 - L1_Mus2 LINE L1 -2679 3204 1824 4 644 39303 8 0 1 chr3 7856492 7863282 -151736501 - L1Md_A LINE L1 0 6582 1 4 644 3756 116 0 3 chr3 7863283 7863923 -151735860 - MusHAL1 LINE L1 -2074 638 1 4 80 2744 227 59 33 chr3 7863893 7864771 -151735012 - L1_Mus2 LINE L1 -5384 1232 332 4 645 358 279 23 23 chr3 7864763 7864895 -151734888 - L1VL1 LINE L1 -6339 83 2 4 645 635 332 119 22 chr3 7865414 7865858 -151733925 - L1ME3A LINE L1 -49 6124 5638 4 645 324 301 82 15 chr3 7865917 7865971 -151733812 - L1ME3A LINE L1 -625 5548 5490 4 645 195 42 0 0 chr3 7865971 7865995 -151733788 + (TTTTA)n Simple_repeat Simple_repeat 4 27 0 4 645 324 301 82 15 chr3 7865995 7866146 -151733637 - L1ME3A LINE L1 -684 5489 5329 4 645 1269 27 0 0 chr3 7866646 7866792 -151732991 - B1_Mm SINE Alu 0 147 2 4 645 25 0 0 0 chr3 7867266 7867291 -151732492 + AT_rich Low_complexity Low_complexity 1 25 0 4 645 27 0 0 0 chr3 7867475 7867502 -151732281 + AT_rich Low_complexity Low_complexity 1 27 0 4 645 22379 89 6 3 chr3 7867510 7871522 -151728261 - L1Md_F2 LINE L1 -10 6572 2551 4 645 3590 108 5 34 chr3 7871522 7872551 -151727232 - L1Md_F2 LINE L1 -4241 1642 239 4 645 1054 96 0 7 chr3 7873308 7873444 -151726339 + B1_Mm SINE Alu 2 136 -11 4 645 180 0 0 0 chr3 7873444 7873464 -151726319 + (CAAAA)n Simple_repeat Simple_repeat 4 23 0 4 645 185 312 109 0 chr3 7873893 7873957 -151725826 - MIRb SINE MIR -186 82 12 4 645 230 356 59 10 chr3 7874368 7874470 -151725313 - PB1D7 SINE Alu -11 109 3 4 645 328 361 33 25 chr3 7874470 7874507 -151725276 - B4A SINE B4 -203 89 52 4 645 2379 211 11 50 chr3 7875453 7876427 -151723356 + Lx5 LINE L1 903 1841 -4036 4 645 8981 24 0 0 chr3 7876426 7877531 -151722252 - L1_Mm LINE L1 -585 5298 4194 4 645 1474 161 66 18 chr3 7877540 7877931 -151721852 + RLTR25B LTR ERVK 545 1103 0 4 645 455 165 15 115 chr3 7877932 7878062 -151721721 + Lx5 LINE L1 2462 2578 -3299 4 645 5676 149 13 1 chr3 7878063 7878733 -151721050 + L1VL4 LINE L1 37 707 -5595 4 645 477 138 0 0 chr3 7878733 7878813 -151720970 + (ATG)n Simple_repeat Simple_repeat 2 81 0 4 645 11697 121 11 5 chr3 7878813 7880916 -151718867 + L1VL4 LINE L1 708 2833 -726 4 645 1376 52 13 0 chr3 7880918 7881150 -151718633 + (TTTC)n Simple_repeat Simple_repeat 1 234 0 4 645 441 291 212 23 chr3 7881150 7881456 -151718327 + MTC LTR MaLR 6 369 -52 4 645 9843 186 102 101 chr3 7881625 7883030 -151716753 + Lx5 LINE L1 2563 4030 -1847 4 645 216 0 0 0 chr3 7883030 7883054 -151716729 + (TA)n Simple_repeat Simple_repeat 2 25 0 4 645 9843 205 74 70 chr3 7883054 7883866 -151715917 + Lx5 LINE L1 4031 4884 -2166 4 645 368 219 61 80 chr3 7883866 7884060 -151715723 + RLTR8 LTR ERVK 194 362 -3 4 645 9843 205 74 70 chr3 7884060 7886115 -151713668 + Lx5 LINE L1 4885 7048 -2 4 645 332 301 9 26 chr3 7887000 7887116 -151712667 - MLT1C LTR MaLR -296 171 58 4 645 2613 77 0 11 chr3 7887528 7887883 -151711900 + L1Md_F2 LINE L1 6230 6580 -2 4 645 283 316 69 162 chr3 7887899 7888103 -151711680 + B4 SINE B4 81 265 -27 4 645 240 35 0 0 chr3 7888106 7888135 -151711648 + (CA)n Simple_repeat Simple_repeat 1 29 0 4 645 1005 269 131 25 chr3 7888177 7888543 -151711240 + MTD LTR MaLR 1 405 -14 4 645 656 243 26 21 chr3 7888566 7888759 -151711024 + MTD-int LTR MaLR 10 203 -1055 4 645 1707 224 150 42 chr3 7888762 7888870 -151710913 - RLTR26 LTR ERVK 0 642 521 4 645 408 118 0 0 chr3 7888870 7888938 -151710845 + (CTG)n Simple_repeat Simple_repeat 2 69 0 4 645 1707 224 150 42 chr3 7888938 7889401 -151710382 - RLTR26 LTR ERVK -122 520 9 4 645 778 266 78 84 chr3 7889477 7889901 -151709882 + MTD-int LTR MaLR 311 848 -410 4 645 26 0 0 0 chr3 7889920 7889946 -151709837 + AT_rich Low_complexity Low_complexity 1 26 0 4 645 843 266 64 18 chr3 7890043 7890337 -151709446 + MTD LTR MaLR 1 325 -94 4 645 322 207 92 0 chr3 7890385 7890472 -151709311 + MTD LTR MaLR 301 395 -24 4 645 234 0 0 0 chr3 7890573 7890599 -151709184 + (CAAA)n Simple_repeat Simple_repeat 4 29 0 4 645 293 267 72 20 chr3 7891190 7891363 -151708420 + L1MA7 LINE L1 4966 5147 -996 4 645 219 69 0 0 chr3 7891552 7891581 -151708202 + (CATA)n Simple_repeat Simple_repeat 3 31 0 4 645 315 71 0 0 chr3 7891581 7891622 -151708161 + (TG)n Simple_repeat Simple_repeat 1 42 0 4 645 593 301 87 38 chr3 7891649 7892146 -151707637 + L1MA7 LINE L1 5771 6291 0 4 645 25 51 0 0 chr3 7892576 7892615 -151707168 + AT_rich Low_complexity Low_complexity 1 39 0 4 645 25 65 0 0 chr3 7894773 7894819 -151704964 + AT_rich Low_complexity Low_complexity 1 46 0 4 645 3382 74 0 46 chr3 7895143 7895623 -151704160 - L1_Mus2 LINE L1 0 6566 6109 4 645 529 302 36 26 chr3 7895983 7896177 -151703606 - Lx6 LINE L1 0 7460 7265 4 645 1850 179 19 40 chr3 7896152 7896577 -151703206 + L1_Mur3 LINE L1 3636 4051 -1829 4 645 36 91 0 0 chr3 7896584 7896683 -151703100 + AT_rich Low_complexity Low_complexity 1 99 0 4 645 376 229 9 28 chr3 7896688 7896796 -151702987 + RMER16-int LTR ERVK 3533 3638 -1768 4 645 1660 163 14 3 chr3 7896817 7897101 -151702682 + RMER16-int LTR ERVK 3693 3979 -1427 4 645 1175 75 0 0 chr3 7897572 7897719 -151702064 + B1_Mus1 SINE Alu 2 148 0 4 645 378 121 0 0 chr3 7897719 7897785 -151701998 + (A)n Simple_repeat Simple_repeat 1 66 0 4 645 195 69 0 0 chr3 7897822 7897851 -151701932 + (CA)n Simple_repeat Simple_repeat 2 30 0 4 645 558 148 0 0 chr3 7897858 7897973 -151701810 + (GA)n Simple_repeat Simple_repeat 2 116 0 4 645 206 118 0 0 chr3 7898281 7898315 -151701468 + (T)n Simple_repeat Simple_repeat 1 34 0 4 645 542 305 126 18 chr3 7898421 7898698 -151701085 + Lx9 LINE L1 7162 7468 -176 4 645 207 123 34 34 chr3 7898836 7898895 -151700888 + (CAAA)n Simple_repeat Simple_repeat 2 60 0 4 645 26 50 0 0 chr3 7899272 7899312 -151700471 + AT_rich Low_complexity Low_complexity 1 40 0 4 645 1728 58 53 0 chr3 7899333 7899559 -151700224 + L1Md_F2 LINE L1 6011 6248 -334 4 645 2504 157 65 94 chr3 7899559 7900219 -151699564 - RMER6A LTR ERVK -7 749 109 4 645 307 252 98 29 chr3 7900406 7900508 -151699275 + L1VL2 LINE L1 85 193 -6142 4 645 13283 131 15 39 chr3 7900614 7903484 -151696299 + L1Md_F LINE L1 578 3373 -444 4 645 6608 115 20 22 chr3 7903483 7903891 -151695892 + L1_Mus2 LINE L1 4838 5234 -649 4 645 999 0 0 0 chr3 7903891 7904002 -151695781 + (TATATG)n Simple_repeat Simple_repeat 3 113 0 4 645 7497 82 8 6 chr3 7904002 7905322 -151694461 + L1_Mus2 LINE L1 5235 6566 0 4 645 357 362 27 48 chr3 7905513 7905849 -151693934 + L1ME2 LINE L1 5602 5930 -234 4 645 937 220 66 60 chr3 7905909 7906228 -151693555 - Lx7 LINE L1 0 7696 7376 4 645 529 194 0 0 chr3 7906230 7906323 -151693460 - Lx7 LINE L1 -698 6998 6906 4 645 333 316 21 21 chr3 7907583 7907680 -151692103 - PB1D10 SINE Alu -20 97 1 4 645 206 289 13 0 chr3 7908143 7908219 -151691564 + (CA)n Simple_repeat Simple_repeat 2 78 0 4 645 3152 73 16 2 chr3 7908480 7908908 -151690875 - L1_Mus3 LINE L1 -426 6212 5779 4 645 2972 87 5 2 chr3 7908908 7909322 -151690461 + L1_Mus3 LINE L1 6221 6635 -3 4 645 734 167 0 6 chr3 7909719 7909900 -151689883 + (CA)n Simple_repeat Simple_repeat 1 180 0 4 645 732 184 0 0 chr3 7909940 7910170 -151689613 + (CA)n Simple_repeat Simple_repeat 1 230 0 4 645 334 79 77 31 chr3 7910175 7910240 -151689543 + HAL1-3A_ME LINE L1 1976 2043 -815 4 645 35218 37 0 0 chr3 7910346 7915585 -151684198 + L1Md_T LINE L1 253 5589 -297 4 645 9005 4 0 0 chr3 7915585 7916581 -151683202 + L1Md_T LINE L1 5590 6585 0 4 645 232 310 78 122 chr3 7916598 7916778 -151683005 + MLT1A0 LTR MaLR 174 345 -20 4 645 25 75 0 0 chr3 7916942 7916995 -151682788 + AT_rich Low_complexity Low_complexity 1 53 0 4 645 25 0 0 0 chr3 7917059 7917084 -151682699 + AT_rich Low_complexity Low_complexity 1 25 0 4 645 452 150 9 0 chr3 7918268 7918381 -151681402 + CT-rich Low_complexity Low_complexity 1 114 0 4 645 1371 46 0 0 chr3 7918381 7918644 -151681139 + (TG)n Simple_repeat Simple_repeat 1 263 0 4 645 297 352 165 35 chr3 7918833 7919239 -151680544 + MT2A LTR ERVL 75 533 0 4 645 186 43 0 0 chr3 7920216 7920239 -151679544 + (TCC)n Simple_repeat Simple_repeat 3 25 0 4 645 186 316 25 25 chr3 7921391 7921472 -151678311 - MIR SINE MIR -116 146 66 4 645 3347 28 5 0 chr3 7922654 7923048 -151676735 + MTA_Mm LTR MaLR 1 396 0 4 645 1033 318 40 5 chr3 7923652 7924032 -151675751 - RodERV21-int LTR ERV1 -198 4793 4401 4 645 977 350 47 18 chr3 7924048 7924648 -151675135 - RodERV21-int LTR ERV1 -632 4359 3743 4 645 882 58 0 16 chr3 7925104 7925227 -151674556 + B1_Mus1 SINE Alu 28 148 0 4 645 369 58 43 0 chr3 7925227 7925296 -151674487 + (CAAAA)n Simple_repeat Simple_repeat 1 72 0 4 645 625 12 48 0 chr3 7925387 7925471 -151674312 + (TTCTC)n Simple_repeat Simple_repeat 5 92 0 4 645 267 31 0 0 chr3 7926711 7926743 -151673040 + (TA)n Simple_repeat Simple_repeat 2 33 0 4 645 515 285 123 4 chr3 7926843 7927111 -151672672 - L1MC1 LINE L1 -1 6332 6033 5 645 527 305 167 39 chr3 7927368 7928034 -151671749 + L1MB7 LINE L1 5417 6167 -17 5 645 207 333 10 20 chr3 7928338 7928439 -151671344 + GA-rich Low_complexity Low_complexity 2 101 0 5 645 225 386 39 23 chr3 7928442 7928572 -151671211 - ORR1E LTR MaLR -210 149 18 5 645 252 246 0 17 chr3 7929196 7929254 -151670529 + GA-rich Low_complexity Low_complexity 3 59 0 5 645 249 243 10 37 chr3 7929257 7929341 -151670442 + B1F SINE Alu 30 142 -7 5 645 273 29 0 0 chr3 7929345 7929379 -151670404 + (CAAA)n Simple_repeat Simple_repeat 3 36 0 5 645 885 183 116 24 chr3 7929476 7929683 -151670100 + URR1A DNA MER1_type 1 226 0 5 645 22 0 0 0 chr3 7930552 7930574 -151669209 + AT_rich Low_complexity Low_complexity 1 22 0 5 645 206 340 70 78 chr3 7930576 7930860 -151668923 - L2 LINE L2 -390 3029 2748 5 645 428 313 12 98 chr3 7931683 7931846 -151667937 + RSINE1 SINE B4 17 165 0 5 645 282 286 161 81 chr3 7932031 7932261 -151667522 + MER102b DNA MER1_type 27 253 -78 5 645 226 312 47 0 chr3 7933487 7933551 -151666232 - ORR1E LTR MaLR -291 68 2 5 645 445 190 0 12 chr3 7934220 7934305 -151665478 + RMER6B LTR ERVK 354 437 -24 5 645 24 0 0 0 chr3 7934466 7934490 -151665293 + AT_rich Low_complexity Low_complexity 1 24 0 5 645 311 329 47 0 chr3 7934507 7934592 -151665191 - RMER1C Other Other -585 757 669 5 645 351 0 0 0 chr3 7934600 7934639 -151665144 + (TG)n Simple_repeat Simple_repeat 1 39 0 5 645 360 0 0 0 chr3 7934639 7934678 -151665105 + (GA)n Simple_repeat Simple_repeat 1 40 0 5 645 2701 183 44 10 chr3 7934682 7935185 -151664598 + RLTR11A2 LTR ERVK 6 525 -2 5 645 402 301 58 9 chr3 7935187 7935336 -151664447 - RMER1C Other Other -541 801 592 5 645 1898 128 18 61 chr3 7935971 7936313 -151663470 - ORR1A2 LTR MaLR 0 327 1 5 645 603 270 139 6 chr3 7936891 7937184 -151662599 + L1MA6 LINE L1 5459 5773 -527 5 645 183 129 0 0 chr3 7937184 7937215 -151662568 + (TATG)n Simple_repeat Simple_repeat 2 32 0 5 645 603 269 138 6 chr3 7937215 7937347 -151662436 + L1MA6 LINE L1 5774 5942 -358 5 645 200 143 24 0 chr3 7938493 7938535 -151661248 + CT-rich Low_complexity Low_complexity 3 45 0 5 645 369 0 0 0 chr3 7938999 7939040 -151660743 + (TG)n Simple_repeat Simple_repeat 2 42 0 5 645 235 318 118 0 chr3 7939235 7939345 -151660438 - L2a LINE L2 -30 3396 3274 5 645 4226 52 19 0 chr3 7940085 7940604 -151659179 + L1Md_F2 LINE L1 6042 6570 -12 5 645 10185 88 19 2 chr3 7940937 7942412 -151657371 + Lx3_Mus LINE L1 5514 7007 -2 5 645 378 108 0 0 chr3 7943191 7943256 -151656527 + (TC)n Simple_repeat Simple_repeat 1 65 0 5 645 264 167 0 0 chr3 7943385 7943433 -151656350 + (TGAA)n Simple_repeat Simple_repeat 1 48 0 5 645 511 308 109 17 chr3 7944901 7945076 -151654707 - B3A SINE B2 0 198 8 5 645 625 241 36 14 chr3 7945104 7945243 -151654540 - B1_Mur1 SINE Alu -1 148 7 5 645 269 290 93 132 chr3 7945108 7945259 -151654524 - B4 SINE B4 -69 223 79 5 645 186 349 54 18 chr3 7945509 7945620 -151654163 + L2a LINE L2 2791 2905 -514 5 645 224 389 76 22 chr3 7945677 7945861 -151653922 + L2a LINE L2 2923 3116 -310 5 645 307 253 52 10 chr3 7945913 7946009 -151653774 + MLT1E1A LTR MaLR 1 100 -580 5 645 251 350 134 57 chr3 7946153 7946362 -151653421 + MLT1E1 LTR MaLR 428 652 -2 5 645 21623 156 39 9 chr3 7946419 7951490 -151648293 - Lx2B LINE L1 -3 6997 1775 5 645 181 305 204 7 chr3 7951568 7951710 -151648073 + L2a LINE L2 3235 3404 -22 5 645 324 0 0 0 chr3 7951780 7951816 -151647967 + (CA)n Simple_repeat Simple_repeat 2 37 0 5 645 379 334 63 28 chr3 7952223 7952452 -151647331 + B4A SINE B4 27 263 -29 5 645 687 279 50 0 chr3 7952942 7953121 -151646662 + ORR1D2 LTR MaLR 1 188 -182 5 645 1109 304 114 22 chr3 7953279 7954136 -151645647 - L1MC1 LINE L1 -18 6315 5372 5 645 856 312 9 132 chr3 7955113 7955538 -151644245 - MTEa LTR MaLR -4 375 3 5 645 2360 324 57 25 chr3 7955542 7956420 -151643363 - MTEa-int LTR MaLR -2 1578 673 5 645 3876 262 156 3 chr3 7956494 7957658 -151642125 - Lx6 LINE L1 -15 7445 6105 5 645 473 223 8 15 chr3 7959423 7959555 -151640228 - Lx6 LINE L1 -11 7449 7319 5 645 486 0 0 0 chr3 7959570 7959624 -151640159 + (TCTA)n Simple_repeat Simple_repeat 1 54 0 5 645 16059 102 18 12 chr3 7959624 7963098 -151636685 - Lx3A LINE L1 -14 6967 3471 5 645 4774 90 13 6 chr3 7963097 7963804 -151635979 + Lx3A LINE L1 2748 3459 -2427 5 645 768 240 0 0 chr3 7963842 7963992 -151635791 + B1_Mur4 SINE Alu 1 150 0 5 645 1517 248 71 53 chr3 7964000 7964087 -151635696 - Lx7 LINE L1 -186 7510 7425 5 645 371 113 0 16 chr3 7964087 7964150 -151635633 + (TA)n Simple_repeat Simple_repeat 2 63 0 5 645 1517 248 71 53 chr3 7964150 7964178 -151635605 - Lx7 LINE L1 -272 7424 7409 5 645 3941 139 61 7 chr3 7964178 7964851 -151634932 + Lx2 LINE L1 6274 6982 -15 5 645 1517 248 71 53 chr3 7964851 7964895 -151634888 - Lx7 LINE L1 -288 7408 7362 5 645 480 35 0 0 chr3 7964895 7964953 -151634830 + (GGAA)n Simple_repeat Simple_repeat 4 61 0 5 645 1517 248 71 53 chr3 7964953 7965285 -151634498 - Lx7 LINE L1 -335 7361 7008 5 645 4061 230 86 93 chr3 7965687 7966056 -151633727 - Lx7 LINE L1 -674 7022 6647 5 645 4022 124 23 62 chr3 7966056 7966837 -151632946 - RMER17A LTR ERVK 0 751 1 5 645 4061 230 86 93 chr3 7966837 7967670 -151632113 - Lx7 LINE L1 -1050 6646 5770 5 645 1084 97 14 0 chr3 7967670 7967815 -151631968 + B1_Mus1 SINE Alu 2 148 0 5 645 6581 185 43 26 chr3 7967815 7969276 -151630507 - Lx7 LINE L1 -107 5773 4358 5 645 1551 257 41 34 chr3 7969295 7969830 -151629953 - Lx7 LINE L1 -1457 6239 5701 5 645 486 158 0 0 chr3 7969826 7969908 -151629875 - Lx7 LINE L1 -784 5096 5015 5 645 3368 158 22 3 chr3 7969910 7970537 -151629246 - Lx7 LINE L1 -1518 4362 3724 5 645 2677 191 108 9 chr3 7970543 7970851 -151628932 - Lx7 LINE L1 -3509 2371 2062 5 645 498 33 0 0 chr3 7970851 7970911 -151628872 + (TG)n Simple_repeat Simple_repeat 2 61 0 5 645 2677 191 108 9 chr3 7970911 7971268 -151628515 - Lx7 LINE L1 -3819 2061 1640 5 645 327 85 0 0 chr3 7971268 7971315 -151628468 + (TTTTC)n Simple_repeat Simple_repeat 2 48 0 5 645 4462 136 20 14 chr3 7971330 7972060 -151627723 - Lx LINE L1 -6 6648 5914 5 645 343 197 13 0 chr3 7972060 7972136 -151627647 - Lx7 LINE L1 -4227 1653 1577 5 645 402 21 0 0 chr3 7972155 7972202 -151627581 + (TG)n Simple_repeat Simple_repeat 1 47 0 5 645 447 19 0 0 chr3 7972202 7972253 -151627530 + (GA)n Simple_repeat Simple_repeat 1 52 0 5 645 4003 33 0 8 chr3 7972512 7972995 -151626788 - L1Md_F2 LINE L1 0 6582 6104 5 645 318 338 66 47 chr3 7974072 7974283 -151625500 + MIR SINE MIR 5 219 -43 5 645 513 0 0 0 chr3 7975831 7975888 -151623895 + (TA)n Simple_repeat Simple_repeat 2 58 0 5 645 23 33 0 0 chr3 7978303 7978333 -151621450 + AT_rich Low_complexity Low_complexity 1 30 0 5 645 237 108 0 0 chr3 7978593 7978630 -151621153 + (CA)n Simple_repeat Simple_repeat 1 37 0 5 645 269 288 212 0 chr3 7980559 7980729 -151619054 + MER2 DNA MER2_type 36 241 -104 5 645 638 167 0 8 chr3 7981378 7981511 -151618272 + (TATG)n Simple_repeat Simple_repeat 3 134 0 5 645 572 320 98 38 chr3 7981520 7981786 -151617997 - B4A SINE B4 -3 289 8 5 645 495 321 101 19 chr3 7981878 7982145 -151617638 + B4A SINE B4 1 289 -3 5 645 686 157 16 0 chr3 7982373 7982494 -151617289 + URR1A DNA MER1_type 83 205 -21 5 645 356 310 118 85 chr3 7983317 7983337 -151616446 + CYRA11_Mm Unknown Y-chromosome 159 222 -395 5 645 810 178 113 1 chr3 7983337 7983528 -151616255 - URR1B DNA MER1_type 0 225 1 5 645 356 310 118 85 chr3 7983528 7983593 -151616190 + CYRA11_Mm Unknown Y-chromosome 223 446 -171 5 645 1656 101 13 0 chr3 7983593 7983831 -151615952 - L1_Mus1 LINE L1 0 6567 6327 5 645 356 310 118 85 chr3 7983831 7983917 -151615866 + CYRA11_Mm Unknown Y-chromosome 447 533 -84 5 645 848 73 0 0 chr3 7983917 7984026 -151615757 + L1_Mus1 LINE L1 6222 6330 -237 5 645 313 376 116 18 chr3 7984045 7984329 -151615454 + Zaphod DNA Tip100 7 318 -3713 5 645 553 330 86 4 chr3 7984383 7984651 -151615132 + Zaphod DNA Tip100 403 692 -3339 5 645 378 0 0 0 chr3 7984767 7984809 -151614974 + (TG)n Simple_repeat Simple_repeat 1 42 0 5 645 438 20 0 0 chr3 7985877 7985928 -151613855 + (TG)n Simple_repeat Simple_repeat 2 52 0 5 645 22441 160 33 15 chr3 7986377 7992347 -151607436 - Lx LINE L1 -1 6653 567 5 645 401 321 28 77 chr3 7992488 7992670 -151607113 + RMER15 LTR ERVL 300 472 -103 5 645 333 0 0 0 chr3 7992670 7992707 -151607076 + (TG)n Simple_repeat Simple_repeat 2 38 0 5 645 1232 61 0 0 chr3 7993219 7993384 -151606399 + L1_Mus2 LINE L1 6402 6566 0 5 80 29396 151 29 25 chr3 7993436 7999996 -151599787 - L1_Mus1 LINE L1 -381 6189 567 5 646 679 266 0 10 chr3 8000317 8000511 -151599272 - Lx2B LINE L1 -13 6987 6796 1 646 3646 156 74 55 chr3 8000586 8001652 -151598131 - RLTR13D1 LTR ERVK 0 1023 1 2 646 3188 251 32 96 chr3 8001652 8003218 -151596565 - MYSERV16_I-int LTR ERVK -308 2018 554 3 646 593 231 7 51 chr3 8003218 8003355 -151596428 - B1_Mur3 SINE Alu -1 148 18 4 646 811 160 132 76 chr3 8003929 8004233 -151595550 - MYSERV6-int LTR ERVK -2232 6727 6407 5 646 385 197 61 0 chr3 8004342 8004408 -151595375 - B1_Mur2 SINE Alu -41 108 39 6 646 271 204 0 53 chr3 8004361 8004418 -151595365 - MT2B LTR ERVL -361 240 187 7 646 4091 136 19 0 chr3 8004933 8005552 -151594231 + Lx LINE L1 6015 6645 -9 8 646 597 97 0 120 chr3 8005563 8005680 -151594103 + ETnERV2-int LTR ERVK 3039 3141 -1703 9 646 302 182 15 15 chr3 8005649 8005716 -151594067 + ETnERV2-int LTR ERVK 6127 6193 -1213 1 646 1133 180 21 15 chr3 8005715 8006007 -151593776 + ETnERV2-int LTR ERVK 6222 6449 -957 9 646 1585 134 4 0 chr3 8005983 8006236 -151593547 + ETnERV3-int LTR ERVK 5529 5782 -26 1 646 1468 194 99 35 chr3 8006245 8006684 -151593099 + RLTR13B1 LTR ERVK 1 531 -371 1 646 462 77 24 71 chr3 8006687 8006771 -151593012 + ETnERV2-int LTR ERVK 7327 7406 0 9 646 943 208 43 153 chr3 8006776 8007128 -151592655 + RLTRETN_Mm LTR ERVK 9 321 -1 9 646 3317 155 22 22 chr3 8007128 8007723 -151592060 + Lx2 LINE L1 6403 6997 0 1 646 279 159 0 0 chr3 8007744 8007788 -151591995 - RLTR15 LTR ERVK -315 44 1 1 646 666 320 56 0 chr3 8007898 8008095 -151591688 - MLT1A0 LTR MaLR -4 361 154 1 646 934 214 41 23 chr3 8008119 8008339 -151591444 - RMER19C LTR ERVK -17 594 371 1 646 437 0 19 0 chr3 8008603 8008656 -151591127 + (TG)n Simple_repeat Simple_repeat 2 55 0 1 646 660 107 0 0 chr3 8008879 8008991 -151590792 + (GGA)n Simple_repeat Simple_repeat 3 114 0 1 646 22 56 0 0 chr3 8009813 8009849 -151589934 + AT_rich Low_complexity Low_complexity 1 36 0 1 646 1550 219 105 162 chr3 8010844 8011492 -151588291 - RMER19C LTR ERVK 0 611 1 1 646 21 0 0 0 chr3 8012223 8012244 -151587539 + AT_rich Low_complexity Low_complexity 1 21 0 2 646 366 292 22 37 chr3 8013068 8013203 -151586580 + RMER1B Other Other 8 140 -926 2 646 1530 220 57 77 chr3 8013332 8013825 -151585958 + RMER1B Other Other 570 1052 -14 2 646 568 336 105 16 chr3 8013841 8014147 -151585636 - MLT1A0 LTR MaLR -28 337 5 2 646 203 250 0 20 chr3 8014622 8014671 -151585112 + (TG)n Simple_repeat Simple_repeat 2 49 0 2 646 689 353 54 36 chr3 8014682 8014961 -151584822 - B4A SINE B4 -8 284 1 2 646 194 356 29 19 chr3 8015443 8015546 -151584237 + L2a LINE L2 3306 3409 -17 2 646 556 289 137 14 chr3 8016091 8016302 -151583481 + B4A SINE B4 1 237 -55 2 646 3315 89 0 0 chr3 8017790 8018250 -151581533 - L1_Mus3 LINE L1 -73 5810 5351 2 646 5491 102 17 25 chr3 8018251 8019088 -151580695 + L1_Mus3 LINE L1 5804 6633 -5 2 646 726 133 18 0 chr3 8019492 8019605 -151580178 - RLTR15 LTR ERVK -4 355 241 2 646 3422 76 4 11 chr3 8019605 8020057 -151579726 - RLTR44B LTR ERVK 0 449 1 2 646 8747 108 78 35 chr3 8020057 8022677 -151577106 - RLTR44-int LTR ERVK 0 2812 1 2 646 3334 76 5 5 chr3 8022677 8023126 -151576657 - RLTR44B LTR ERVK 0 449 1 2 646 745 163 130 28 chr3 8023126 8023302 -151576481 - RLTR15 LTR ERVK -113 246 53 2 646 2464 218 26 118 chr3 8023296 8023921 -151575862 + ORR1D1-int LTR MaLR 840 1405 -104 3 646 1000 128 23 23 chr3 8023921 8024097 -151575686 - Lx LINE L1 -13 6641 6466 3 646 2464 218 26 118 chr3 8024097 8024209 -151575574 + ORR1D1-int LTR MaLR 1406 1509 0 3 646 1239 234 63 57 chr3 8024250 8024585 -151575198 - ORR1C1 LTR MaLR -25 353 5 3 646 930 258 121 109 chr3 8024589 8024755 -151575028 + ORR1D1 LTR MaLR 23 163 -211 3 646 681 13 0 0 chr3 8024755 8024833 -151574950 + (TC)n Simple_repeat Simple_repeat 1 78 0 3 646 930 258 121 109 chr3 8024833 8025014 -151574769 + ORR1D1 LTR MaLR 164 373 -1 3 646 376 301 58 32 chr3 8025470 8025659 -151574124 - MIRb SINE MIR -8 260 67 3 646 1107 42 36 0 chr3 8026111 8026277 -151573506 + (TG)n Simple_repeat Simple_repeat 1 172 0 3 646 474 344 25 54 chr3 8026288 8026491 -151573292 + MLT1L LTR MaLR 84 280 -330 3 646 739 250 0 0 chr3 8026982 8027122 -151572661 - B1_Mus1 SINE Alu -7 141 2 3 646 1791 98 10 37 chr3 8027153 8027350 -151572433 - L1_Mus3 LINE L1 -6 6632 6442 3 646 3482 23 2 0 chr3 8027350 8027745 -151572038 - MTA_Mm LTR MaLR 0 396 1 3 646 1791 98 10 37 chr3 8027745 8027844 -151571939 - L1_Mus3 LINE L1 -197 6441 6344 3 646 1091 88 0 7 chr3 8027844 8027992 -151571791 + B1_Mus1 SINE Alu 2 148 0 4 646 342 61 0 0 chr3 8027992 8028041 -151571742 + (CAAAA)n Simple_repeat Simple_repeat 1 49 0 4 646 931 108 0 0 chr3 8028055 8028194 -151571589 - L1_Mus3 LINE L1 -283 6355 6217 3 646 235 301 48 0 chr3 8028268 8028371 -151571412 - L1M2 LINE L1 -2456 3687 3580 4 646 376 265 39 25 chr3 8028401 8028640 -151571143 + L1M2 LINE L1 5136 5385 -912 4 646 5110 194 77 5 chr3 8028674 8030273 -151569510 - Lx2B LINE L1 -18 6982 5244 4 646 875 277 16 23 chr3 8030277 8030580 -151569203 + L1_Rod LINE L1 5547 5847 0 4 646 32 0 0 0 chr3 8030917 8030949 -151568834 + AT_rich Low_complexity Low_complexity 1 32 0 4 646 678 202 51 0 chr3 8031044 8031202 -151568581 - Lx9 LINE L1 -156 7488 7323 4 646 6051 71 9 5 chr3 8031355 8032162 -151567621 - L1Md_F2 LINE L1 -2 6580 5771 4 646 29 60 0 0 chr3 8032412 8032462 -151567321 + AT_rich Low_complexity Low_complexity 1 50 0 4 646 288 53 0 0 chr3 8032465 8032503 -151567280 + (TG)n Simple_repeat Simple_repeat 1 38 0 5 646 612 239 164 16 chr3 8032521 8032844 -151566939 - L1MC3 LINE L1 -1 7784 7414 5 646 211 109 65 0 chr3 8032853 8032899 -151566884 + (TTAA)n Simple_repeat Simple_repeat 4 52 0 5 646 25 31 0 0 chr3 8033052 8033084 -151566699 + AT_rich Low_complexity Low_complexity 1 32 0 5 646 640 280 25 15 chr3 8033379 8033582 -151566201 + MER67D LTR ERV1 37 241 -273 5 646 483 267 42 58 chr3 8034375 8034566 -151565217 + RLTR23 LTR ERV1 243 430 0 5 646 426 351 59 71 chr3 8034842 8035182 -151564601 + RLTR17 LTR ERVK 88 423 -269 5 646 28 0 0 0 chr3 8035694 8035722 -151564061 + AT_rich Low_complexity Low_complexity 1 28 0 5 646 347 42 230 27 chr3 8037090 8037164 -151562619 + L1_Mus3 LINE L1 6541 6629 -9 5 646 206 268 28 14 chr3 8037244 8037316 -151562467 + GA-rich Low_complexity Low_complexity 3 75 0 5 646 440 372 13 7 chr3 8038217 8038366 -151561417 + RSINE1 SINE B4 12 161 -4 6 646 180 77 0 0 chr3 8038384 8038410 -151561373 + (CA)n Simple_repeat Simple_repeat 1 26 0 6 646 303 341 76 0 chr3 8039328 8039460 -151560323 - L1MD LINE L1 -525 5834 5693 6 646 454 322 80 28 chr3 8039649 8039825 -151559958 + MLT1J2 LTR MaLR 238 422 -26 6 646 252 267 107 0 chr3 8040889 8040964 -151558819 + RSINE1 SINE B4 4 86 -79 6 646 225 259 124 45 chr3 8040964 8040978 -151558805 + B3A SINE B2 3 98 -100 6 646 337 294 67 0 chr3 8041456 8041575 -151558208 + MIRb SINE MIR 81 207 -61 6 646 705 63 38 68 chr3 8042374 8042614 -151557169 + (TAGA)n Simple_repeat Simple_repeat 1 232 0 6 646 270 312 59 18 chr3 8043160 8043382 -151556401 - L1MB3 LINE L1 -33 6150 5920 6 646 3846 82 18 2 chr3 8043609 8044348 -151555435 - L1_Mus2 LINE L1 -518 6048 5301 6 646 3588 92 58 0 chr3 8044349 8044850 -151554933 + L1_Mus2 LINE L1 6036 6565 -1 6 646 241 352 91 18 chr3 8045058 8045168 -151554615 - B1_Mur3 SINE Alu -22 127 10 7 646 225 348 28 112 chr3 8045268 8045553 -151554230 - L2 LINE L2 -869 2550 2290 7 646 189 0 0 0 chr3 8046005 8046026 -151553757 + (CAATT)n Simple_repeat Simple_repeat 4 24 0 7 646 241 65 15 62 chr3 8046293 8046358 -151553425 + (CTGGGG)n Simple_repeat Simple_repeat 1 62 0 7 646 264 30 0 0 chr3 8046624 8046657 -151553126 + (CA)n Simple_repeat Simple_repeat 2 34 0 7 646 360 336 19 0 chr3 8046724 8046828 -151552955 + B3A SINE B2 58 163 -35 7 646 311 322 76 57 chr3 8046944 8047102 -151552681 + MER5B DNA MER1_type 3 163 -15 7 646 1866 170 17 3 chr3 8047369 8047723 -151552060 + RLTR15 LTR ERVK 1 359 0 7 646 227 316 0 20 chr3 8047724 8047824 -151551959 + Lx7 LINE L1 7585 7682 -14 7 646 479 17 0 16 chr3 8047835 8047896 -151551887 + (GA)n Simple_repeat Simple_repeat 2 61 0 7 646 25 51 0 0 chr3 8048607 8048646 -151551137 + AT_rich Low_complexity Low_complexity 1 39 0 8 646 199 264 11 11 chr3 8049500 8049592 -151550191 + GA-rich Low_complexity Low_complexity 1 92 0 8 646 297 323 58 51 chr3 8050347 8050484 -151549299 + MTEb LTR MaLR 1 138 -241 8 646 685 103 43 14 chr3 8050568 8050706 -151549077 + CT-rich Low_complexity Low_complexity 6 147 0 8 646 2087 88 34 54 chr3 8050710 8051059 -151548724 - L1_Mus3 LINE L1 -1 6637 6296 8 646 401 0 20 0 chr3 8051934 8051983 -151547800 + (TG)n Simple_repeat Simple_repeat 2 51 0 8 646 390 364 22 15 chr3 8051986 8052120 -151547663 - B1F2 SINE Alu -12 137 3 8 646 2312 73 3 46 chr3 8052792 8053137 -151546646 + L1_Mus4 LINE L1 6300 6629 -7 8 646 1680 293 96 109 chr3 8053227 8053686 -151546097 + Lx5 LINE L1 5727 6229 -821 8 646 207 0 0 0 chr3 8053686 8053709 -151546074 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 8 646 1680 293 96 109 chr3 8053709 8054591 -151545192 + Lx5 LINE L1 6230 7050 0 8 646 405 298 0 0 chr3 8055614 8055728 -151544055 - Tigger5 DNA MER2_type 0 2406 2293 9 646 306 370 124 11 chr3 8055759 8055945 -151543838 - Tigger5 DNA MER2_type -2198 208 2 9 646 563 390 0 6 chr3 8056275 8056435 -151543348 + RSINE1 SINE B4 3 161 -4 9 646 231 36 0 0 chr3 8056439 8056467 -151543316 + (CA)n Simple_repeat Simple_repeat 1 28 0 9 646 386 157 0 12 chr3 8056467 8056551 -151543232 + (TA)n Simple_repeat Simple_repeat 2 84 0 9 646 257 273 39 13 chr3 8057058 8057136 -151542647 + MER67D LTR ERV1 28 107 -407 9 646 253 312 16 0 chr3 8057140 8057204 -151542579 + RSINE1 SINE B4 68 132 -33 9 646 315 0 0 0 chr3 8057217 8057252 -151542531 + (CA)n Simple_repeat Simple_repeat 2 36 0 9 646 22 56 0 0 chr3 8057252 8057288 -151542495 + AT_rich Low_complexity Low_complexity 1 36 0 9 646 281 93 19 0 chr3 8057965 8058019 -151541764 + (TTTG)n Simple_repeat Simple_repeat 2 56 0 9 646 291 402 35 68 chr3 8058319 8058462 -151541321 + ERVL-E-int LTR ERVL 1824 1968 -3699 9 646 1074 103 7 0 chr3 8058462 8058608 -151541175 + B1_Mus2 SINE Alu 1 147 0 1 646 1254 95 0 0 chr3 8058614 8058793 -151540990 + (GAA)n Simple_repeat Simple_repeat 2 180 0 1 646 291 402 35 68 chr3 8058793 8058981 -151540802 + ERVL-E-int LTR ERVL 1969 2151 -3516 9 646 393 203 0 16 chr3 8059045 8059136 -151540647 - MTC LTR MaLR 0 421 333 1 646 230 214 57 0 chr3 8060033 8060103 -151539680 + GA-rich Low_complexity Low_complexity 5 78 0 1 646 321 331 105 57 chr3 8060779 8061131 -151538652 + MLT1H2-int LTR MaLR 84 452 -957 1 646 310 302 107 28 chr3 8061115 8061294 -151538489 + MLT1H2-int LTR MaLR 1041 1229 -158 1 646 504 152 20 11 chr3 8061296 8061399 -151538384 - ORR1C2 LTR MaLR 0 384 227 1 646 295 314 48 24 chr3 8061401 8061525 -151538258 + MLT1H2-int LTR MaLR 1282 1408 -1 1 646 281 264 110 0 chr3 8061606 8061697 -151538086 + MLT1H2 LTR MaLR 61 161 -328 1 646 398 143 114 0 chr3 8062342 8062447 -151537336 + L1MA9 LINE L1 6193 6309 -3 1 646 241 301 41 0 chr3 8063213 8063286 -151536497 + MLT1A0 LTR MaLR 5 80 -285 1 646 3897 56 0 0 chr3 8063287 8063772 -151536011 + L1Md_F2 LINE L1 5102 5586 -297 1 646 8102 46 2 0 chr3 8063772 8064754 -151535029 + L1Md_F2 LINE L1 5587 6570 -12 1 646 620 330 17 93 chr3 8064774 8065065 -151534718 + MLT1A0 LTR MaLR 97 365 0 1 646 220 195 16 74 chr3 8065879 8066001 -151533782 + (TATAA)n Simple_repeat Simple_repeat 5 119 0 1 646 360 223 0 0 chr3 8067651 8067754 -151532029 + (ATG)n Simple_repeat Simple_repeat 2 104 0 1 646 252 293 0 0 chr3 8067864 8067939 -151531844 + (CATATA)n Simple_repeat Simple_repeat 2 76 0 1 646 669 291 48 5 chr3 8068010 8068217 -151531566 - ID_B1 SINE B4 -8 216 1 1 646 32 57 0 0 chr3 8068375 8068428 -151531355 + AT_rich Low_complexity Low_complexity 1 53 0 1 646 383 250 115 26 chr3 8069477 8069711 -151530072 - Lx9 LINE L1 -1 7643 7389 1 646 470 317 48 6 chr3 8069717 8069885 -151529898 + Lx9 LINE L1 6359 6533 -1111 1 646 1856 193 81 3 chr3 8069888 8070272 -151529511 + RMER10A LTR ERVL 1 414 -28 1 646 180 0 0 0 chr3 8070272 8070292 -151529491 + (TC)n Simple_repeat Simple_repeat 1 20 0 1 646 789 150 0 0 chr3 8070327 8070507 -151529276 + (TC)n Simple_repeat Simple_repeat 1 180 0 1 646 405 0 0 0 chr3 8070507 8070552 -151529231 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 646 263 274 14 14 chr3 8070569 8070643 -151529140 + Lx9 LINE L1 6543 6616 -1028 1 646 420 203 0 0 chr3 8070629 8070698 -151529085 - Lx5 LINE L1 -121 6937 6869 1 646 766 206 48 6 chr3 8070750 8070916 -151528867 + Lx5 LINE L1 6741 6913 -137 1 646 9341 169 28 140 chr3 8070917 8071773 -151528010 - Lx5 LINE L1 -950 6100 5251 1 646 315 0 0 0 chr3 8071773 8071808 -151527975 + (CA)n Simple_repeat Simple_repeat 1 35 0 1 646 9341 165 28 188 chr3 8071808 8072202 -151527581 - Lx5 LINE L1 -627 5250 5085 1 646 653 224 0 0 chr3 8072202 8072309 -151527474 - B3 SINE B2 -109 107 1 1 646 9341 165 28 188 chr3 8072309 8072540 -151527243 - Lx5 LINE L1 -627 5084 4987 1 646 1690 77 0 0 chr3 8072540 8072760 -151527023 - L1_Mus2 LINE L1 0 6566 6347 1 646 9341 165 28 188 chr3 8072760 8074507 -151525276 - Lx5 LINE L1 -891 4986 3254 1 646 282 206 147 0 chr3 8074664 8074766 -151525017 - Lx6 LINE L1 0 7696 7580 1 646 387 0 0 0 chr3 8074798 8074841 -151524942 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 646 975 222 91 0 chr3 8074936 8075197 -151524586 - Lx6 LINE L1 -553 7143 6842 1 646 216 86 0 0 chr3 8075200 8075235 -151524548 + (TCTG)n Simple_repeat Simple_repeat 2 36 0 1 646 213 338 0 0 chr3 8075238 8075318 -151524465 + CT-rich Low_complexity Low_complexity 1 80 0 1 646 8310 198 32 13 chr3 8075328 8077711 -151522072 - Lx6 LINE L1 -573 6887 4226 1 646 7723 152 17 3 chr3 8077766 8079016 -151520767 - Lx2 LINE L1 0 6997 5731 1 646 7404 147 18 31 chr3 8079013 8079885 -151519898 - L1_Mur2 LINE L1 -1140 4737 3854 1 646 183 42 0 0 chr3 8079885 8079909 -151519874 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 1 646 7404 147 18 31 chr3 8079909 8080283 -151519500 - L1_Mur2 LINE L1 -2024 3853 3480 1 646 242 0 0 57 chr3 8080283 8080318 -151519465 + (TTTG)n Simple_repeat Simple_repeat 4 36 0 1 646 7404 147 18 31 chr3 8080318 8080456 -151519327 - L1_Mur2 LINE L1 -2398 3479 3370 1 646 207 0 0 0 chr3 8080868 8080891 -151518892 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 1 646 1604 267 34 12 chr3 8081020 8081430 -151518353 + Lx6 LINE L1 7025 7443 -17 1 646 27 29 0 0 chr3 8082058 8082092 -151517691 + AT_rich Low_complexity Low_complexity 1 34 0 1 646 1561 246 112 56 chr3 8083023 8083142 -151516641 - Lx9 LINE L1 -3 7641 7477 1 646 324 0 0 0 chr3 8083142 8083178 -151516605 + (CA)n Simple_repeat Simple_repeat 2 37 0 1 646 1561 246 112 56 chr3 8083178 8083645 -151516138 - Lx9 LINE L1 -168 7476 7022 1 646 349 229 60 60 chr3 8083646 8083795 -151515988 + Lx9 LINE L1 5898 6046 -1598 1 646 1857 253 86 20 chr3 8083935 8084528 -151515255 + Lx9 LINE L1 6318 6949 -695 1 646 7524 108 3 2 chr3 8085019 8086115 -151513668 - L1_Mus1 LINE L1 -357 5526 4430 1 646 7646 73 4 0 chr3 8086115 8087142 -151512641 + L1_Mus1 LINE L1 5537 6567 0 1 646 3616 30 2 0 chr3 8087477 8087913 -151511870 + RLTR13B4 LTR ERVK 1 437 -366 1 646 1283 277 3 12 chr3 8088239 8088582 -151511201 - Lx2B LINE L1 -6 6994 6655 1 646 21 0 0 0 chr3 8088855 8088876 -151510907 + AT_rich Low_complexity Low_complexity 1 21 0 1 646 291 85 0 0 chr3 8089304 8089351 -151510432 + (TTTAG)n Simple_repeat Simple_repeat 4 50 0 1 646 253 300 11 11 chr3 8089792 8089883 -151509900 + MusHAL1 LINE L1 174 264 -3090 1 646 2630 93 26 3 chr3 8089883 8090085 -151509698 + MT2C_Mm LTR ERVL 89 293 -182 1 646 279 0 0 0 chr3 8090085 8090116 -151509667 + (TCTA)n Simple_repeat Simple_repeat 2 32 0 1 646 2630 93 26 3 chr3 8090116 8090291 -151509492 + MT2C_Mm LTR ERVL 294 474 -1 1 646 7598 142 14 4 chr3 8090291 8092374 -151507409 + L1_Mus4 LINE L1 4532 6634 -2 1 646 1254 95 0 0 chr3 8092411 8092590 -151507193 + (GAGAA)n Simple_repeat Simple_repeat 2 180 0 1 646 472 332 4 91 chr3 8092871 8092939 -151506844 + ID SINE ID 12 73 -151 1 646 207 0 0 0 chr3 8092939 8092962 -151506821 + (CA)n Simple_repeat Simple_repeat 2 24 0 1 646 472 332 4 91 chr3 8092962 8093125 -151506658 + ID_B1 SINE B4 74 222 -2 1 646 320 283 22 0 chr3 8093134 8093226 -151506557 + GA-rich Low_complexity Low_complexity 4 97 0 1 646 320 250 85 21 chr3 8093259 8093353 -151506430 + B3 SINE B2 1 100 -116 1 646 22 70 0 0 chr3 8093726 8093769 -151506014 + AT_rich Low_complexity Low_complexity 1 43 0 1 646 511 202 16 0 chr3 8094241 8094370 -151505413 + (TG)n Simple_repeat Simple_repeat 2 132 0 1 646 262 299 73 36 chr3 8094655 8094874 -151504909 - HAL1b LINE L1 -908 1101 875 1 646 221 234 0 0 chr3 8095457 8095504 -151504279 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 646 276 395 27 0 chr3 8096307 8096454 -151503329 + Lx8 LINE L1 7070 7220 -253 1 646 435 326 96 0 chr3 8096465 8096652 -151503131 + RMER15 LTR ERVL 371 575 0 1 646 295 369 59 64 chr3 8096813 8097033 -151502750 + B4 SINE B4 4 222 -70 1 646 777 282 10 5 chr3 8097042 8097245 -151502538 + Lx9 LINE L1 6308 6511 -1133 1 646 4897 105 4 18 chr3 8097246 8098081 -151501702 - RLTR13D2 LTR ERVK 0 1023 3 1 646 524 173 29 9 chr3 8098083 8098188 -151501595 + Lx9 LINE L1 6509 6615 -1029 1 646 609 219 29 14 chr3 8098211 8098350 -151501433 - B1_Mus1 SINE Alu -2 146 6 1 646 252 303 26 154 chr3 8098244 8098400 -151501383 - MT2B LTR ERVL -337 264 129 1 646 353 264 44 100 chr3 8098493 8098653 -151501130 + MTEa LTR MaLR 229 379 0 1 646 753 348 60 17 chr3 8098697 8099048 -151500735 + MTEa-int LTR MaLR 10 375 -1205 1 646 1180 231 94 29 chr3 8099173 8099481 -151500302 - ORR1D1 LTR MaLR -4 370 43 1 646 259 222 19 0 chr3 8099545 8099599 -151500184 + B3A SINE B2 20 74 -124 1 646 293 235 2 0 chr3 8099614 8099680 -151500103 + B3A SINE B2 20 86 -130 1 646 266 394 6 42 chr3 8099683 8099850 -151499933 + MTEa-int LTR MaLR 523 683 -897 1 646 480 233 33 29 chr3 8100164 8100370 -151499413 - Lx9 LINE L1 -1618 6026 5783 1 646 350 278 15 29 chr3 8100373 8100510 -151499273 + Lx9 LINE L1 7383 7517 -127 1 646 367 146 103 44 chr3 8100561 8100697 -151499086 + Lx9 LINE L1 7499 7642 -2 1 646 28 0 0 0 chr3 8100773 8100801 -151498982 + AT_rich Low_complexity Low_complexity 1 28 0 1 646 406 364 49 0 chr3 8101104 8101288 -151498495 + MIR SINE MIR 1 193 -69 1 646 4449 195 66 2 chr3 8102446 8103308 -151496475 + Lx5 LINE L1 6134 7050 0 1 646 19185 99 7 12 chr3 8103513 8105971 -151493812 + L1VL1 LINE L1 410 2871 -3012 1 646 1081 111 0 16 chr3 8105971 8106154 -151493629 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 1 646 19185 107 2 18 chr3 8106154 8107476 -151492307 + L1VL1 LINE L1 2872 4154 -1729 1 646 4097 113 12 14 chr3 8107494 8108151 -151491632 + ETnERV2-int LTR ERVK 1432 2087 -5319 1 646 554 178 0 0 chr3 8108202 8108292 -151491491 + ETnERV2-int LTR ERVK 2460 2549 -4857 1 646 10117 174 66 45 chr3 8108300 8110600 -151489183 + RMER16-int LTR ERVK 1829 4176 -1230 1 646 442 248 0 28 chr3 8110612 8110720 -151489063 + ETnERV2-int LTR ERVK 6101 6205 -1201 1 646 408 252 94 59 chr3 8110695 8110976 -151488807 + ETnERV2-int LTR ERVK 6233 6425 -981 1 646 399 116 69 42 chr3 8111184 8111256 -151488527 + ETnERV2-int LTR ERVK 7331 7404 -2 1 646 1945 146 67 3 chr3 8111265 8111595 -151488188 + RLTR9A2 LTR ERVK 31 381 -2 1 646 1140 90 0 0 chr3 8112340 8112485 -151487298 - B1_Mus2 SINE Alu 0 147 3 1 646 558 125 0 0 chr3 8112911 8113023 -151486760 + (GA)n Simple_repeat Simple_repeat 2 113 0 1 646 1067 238 44 16 chr3 8113227 8113543 -151486240 + Lx9 LINE L1 7141 7465 -179 1 646 25025 120 9 8 chr3 8113556 8113702 -151486081 + L1_Mus1 LINE L1 1736 1881 -4002 1 646 3529 10 5 0 chr3 8113702 8114096 -151485687 - MTA_Mm LTR MaLR 0 396 1 1 646 25025 110 10 6 chr3 8114096 8118801 -151480982 + L1_Mus1 LINE L1 1882 6567 0 1 646 184 364 60 8 chr3 8119124 8119257 -151480526 + L4 LINE RTE 1264 1403 -626 1 646 737 238 35 84 chr3 8119572 8119924 -151479859 - Lx7 LINE L1 -40 7656 7106 1 646 3858 221 20 9 chr3 8120000 8120847 -151478936 - Lx7 LINE L1 -355 7341 6486 1 646 6210 107 2 7 chr3 8120856 8121474 -151478309 - Lx3_Mus LINE L1 -8 7001 6388 1 646 1267 88 27 11 chr3 8121474 8121657 -151478126 - B2_Mm2 SINE B2 -6 189 4 1 646 6210 107 2 7 chr3 8121657 8121942 -151477841 - Lx3_Mus LINE L1 -622 6387 6102 1 646 1911 244 55 43 chr3 8122853 8123426 -151476357 + L1_Mur3 LINE L1 33 625 -7087 1 646 4532 139 15 109 chr3 8123426 8124420 -151475363 - RLTR13D6 LTR ERVK 0 902 2 1 646 1911 244 55 43 chr3 8124420 8124515 -151475268 + L1_Mur3 LINE L1 626 709 -7003 1 646 536 126 17 23 chr3 8124495 8124628 -151475155 - L1_Mus4 LINE L1 -1030 5978 5848 1 646 1052 230 36 0 chr3 8124633 8124907 -151474876 + Lx6 LINE L1 718 1001 -6727 1 80 13331 184 58 22 chr3 8124899 8127008 -151472775 + Lx6 LINE L1 2464 4658 -1222 1 647 315 0 0 0 chr3 8127008 8127043 -151472740 + (TAA)n Simple_repeat Simple_repeat 2 36 0 1 647 13331 184 58 22 chr3 8127043 8127779 -151472004 + Lx6 LINE L1 4659 5404 -476 1 647 180 0 0 0 chr3 8127779 8127799 -151471984 + (TTAGGG)n Simple_repeat Simple_repeat 3 22 0 1 647 13331 227 60 19 chr3 8127799 8129590 -151470193 + Lx6 LINE L1 5405 7277 -183 1 647 34837 46 8 4 chr3 8129601 8134923 -151464860 + L1Md_T LINE L1 284 5586 -297 1 647 8477 34 0 0 chr3 8134924 8135919 -151463864 + L1Md_T LINE L1 5588 6582 0 1 647 382 323 151 12 chr3 8135973 8136224 -151463559 - L1M4 LINE L1 -2228 3918 3633 1 647 297 0 0 0 chr3 8136452 8136485 -151463298 + (TGAA)n Simple_repeat Simple_repeat 4 36 0 1 647 264 243 37 18 chr3 8136630 8136739 -151463044 + T-rich Low_complexity Low_complexity 1 111 0 1 647 257 27 54 0 chr3 8136742 8136779 -151463004 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 1 647 32 57 0 0 chr3 8136857 8136910 -151462873 + AT_rich Low_complexity Low_complexity 1 53 0 1 647 1633 225 47 198 chr3 8137776 8138495 -151461288 + RMER19C LTR ERVK 1 611 0 2 647 704 219 11 39 chr3 8138503 8138669 -151461114 - MTC LTR MaLR 0 421 212 2 647 3762 203 71 19 chr3 8138662 8139460 -151460323 - RMER13B LTR ERVK -64 844 5 2 647 1169 196 164 4 chr3 8139470 8139726 -151460057 - MTC LTR MaLR -124 297 1 2 647 1265 275 46 5 chr3 8140306 8140701 -151459082 + Lx9 LINE L1 7058 7468 -176 2 647 429 20 0 0 chr3 8140732 8140782 -151459001 + (GA)n Simple_repeat Simple_repeat 1 50 0 2 647 40 37 0 0 chr3 8140810 8140864 -151458919 + AT_rich Low_complexity Low_complexity 1 54 0 2 647 345 47 0 0 chr3 8141011 8141054 -151458729 + (TAA)n Simple_repeat Simple_repeat 1 43 0 2 647 236 200 0 0 chr3 8141177 8141212 -151458571 + B1_Mus2 SINE Alu 1 35 -112 2 647 452 325 54 7 chr3 8141808 8142074 -151457709 - MER70B LTR ERVL -183 395 98 2 647 629 58 12 0 chr3 8142698 8142784 -151456999 + (TC)n Simple_repeat Simple_repeat 2 88 0 2 647 180 352 45 11 chr3 8143267 8143356 -151456427 + L3 LINE CR1 4384 4475 -14 2 647 405 215 0 0 chr3 8143994 8144073 -151455710 + B4A SINE B4 163 241 -51 2 647 292 296 93 0 chr3 8144075 8144237 -151455546 - L1M3 LINE L1 -870 5430 5254 2 647 264 189 39 51 chr3 8144418 8144496 -151455287 - L1M3 LINE L1 -1328 4815 4739 2 647 374 310 75 55 chr3 8144782 8145130 -151454653 - L1M3 LINE L1 -1376 4767 4410 2 647 303 316 19 42 chr3 8145987 8146251 -151453532 + RLTR45-int LTR ERVK 181 438 -6806 2 647 3021 88 8 26 chr3 8146497 8146990 -151452793 + ETnERV2-int LTR ERVK 2718 3201 -4205 2 647 355 226 11 21 chr3 8147393 8147488 -151452295 + RNERVK23-int LTR ERVK 2978 3071 -5146 2 647 268 305 28 28 chr3 8147857 8148002 -151451781 + RNERVK23-int LTR ERVK 6193 6337 -1880 2 647 255 272 22 0 chr3 8147925 8148017 -151451766 + RLTR4_MM-int LTR ERV1 6013 6106 -1495 2 647 276 259 0 0 chr3 8148462 8148543 -151451240 + RNERVK23-int LTR ERVK 6808 6888 -1329 2 647 1287 307 18 18 chr3 8148888 8149445 -151450338 + RNERVK23-int LTR ERVK 7241 7797 -420 2 647 22 56 0 0 chr3 8150342 8150378 -151449405 + AT_rich Low_complexity Low_complexity 1 36 0 2 647 1934 214 57 47 chr3 8151383 8151961 -151447822 - RLTR31A_Mm LTR ERVK 0 584 1 2 647 845 262 6 6 chr3 8152166 8152339 -151447444 - B3 SINE B2 -34 182 10 2 647 270 257 78 19 chr3 8152594 8152697 -151447086 + MLT2D LTR ERVL 3 111 -303 2 647 189 0 0 0 chr3 8152697 8152718 -151447065 + (TTG)n Simple_repeat Simple_repeat 1 21 0 2 647 1185 62 7 0 chr3 8152723 8152869 -151446914 - B1_Mus1 SINE Alu 0 148 2 2 647 525 80 0 0 chr3 8153546 8153621 -151446162 + (TA)n Simple_repeat Simple_repeat 1 75 0 2 647 194 287 128 10 chr3 8153719 8153821 -151445962 + MIR SINE MIR 53 166 -96 2 647 288 286 98 37 chr3 8154338 8154552 -151445231 - L1_Rod LINE L1 -154 5693 5467 2 647 13162 120 21 7 chr3 8154571 8157289 -151442494 + L1VL4 LINE L1 345 3104 -455 2 647 3498 143 31 3 chr3 8157287 8157905 -151441878 - L1_Mus3 LINE L1 -369 5514 4880 2 647 7076 95 4 7 chr3 8157905 8159038 -151440745 + L1_Mus3 LINE L1 5506 6633 -5 2 647 399 274 130 14 chr3 8159039 8159203 -151440580 - L1_Rod LINE L1 -371 5476 5312 2 647 356 0 23 0 chr3 8159203 8159247 -151440536 + (TTC)n Simple_repeat Simple_repeat 1 45 0 2 647 1011 161 0 0 chr3 8159247 8159427 -151440356 + CT-rich Low_complexity Low_complexity 1 180 0 2 647 227 265 178 23 chr3 8159427 8159500 -151440283 - L1_Rod LINE L1 -563 5323 5243 2 647 4187 130 49 70 chr3 8159617 8160389 -151439394 - Lx2A LINE L1 -1 7007 6252 2 647 186 118 0 0 chr3 8161326 8161360 -151438423 + (T)n Simple_repeat Simple_repeat 1 34 0 2 647 214 242 0 32 chr3 8162111 8162205 -151437578 + (TATG)n Simple_repeat Simple_repeat 2 92 0 2 647 2607 347 42 55 chr3 8162697 8163119 -151436664 - RodERV21-int LTR ERV1 -177 4814 4396 2 647 3780 122 196 1 chr3 8163119 8163545 -151436238 - RMER17D LTR ERVK 0 889 346 2 647 888 90 12 23 chr3 8163545 8163716 -151436067 + (GGAGA)n Simple_repeat Simple_repeat 2 170 0 2 647 3780 122 196 1 chr3 8163716 8164033 -151435750 - RMER17D LTR ERVK -544 345 2 2 647 2607 347 42 55 chr3 8164033 8165792 -151433991 - RodERV21-int LTR ERV1 -596 4395 2660 2 647 315 333 24 20 chr3 8165844 8166095 -151433688 - RodERV21-int LTR ERV1 -1862 3455 3204 2 647 6549 182 58 33 chr3 8167743 8169456 -151430327 - RMER3D-int LTR ERVK -23 2819 1065 2 647 877 252 69 69 chr3 8169470 8169964 -151429819 - RMER3D-int LTR ERVK -2339 503 10 2 647 1542 197 8 0 chr3 8170026 8170290 -151429493 - RLTR17 LTR ERVK -229 463 198 2 647 181 72 0 67 chr3 8170359 8170389 -151429394 + L3 LINE CR1 1285 1312 -3177 2 647 5163 286 35 61 chr3 8170426 8172468 -151427315 - RodERV21-int LTR ERV1 -2274 2717 729 2 647 1996 148 3 3 chr3 8172957 8173268 -151426515 + RLTR10E LTR ERVK 1 311 0 2 647 3124 132 157 122 chr3 8173268 8174107 -151425676 + MMERVK10C-int LTR ERVK 1 869 -6712 2 647 1436 172 128 19 chr3 8174094 8174532 -151425251 + RMER16-int LTR ERVK 192 662 -5475 2 647 291 173 58 0 chr3 8174527 8174579 -151425204 + RMER16-int LTR ERVK 950 1004 -983 2 647 412 320 27 27 chr3 8174710 8174988 -151424795 + IAPEY3-int LTR ERVK 1316 1564 -6017 2 647 266 151 75 0 chr3 8175007 8175060 -151424723 + IAP-d-int LTR ERVK 447 503 -6039 2 647 1304 133 102 0 chr3 8175060 8175286 -151424497 + IAP-d-int LTR ERVK 5007 5255 -1287 2 647 3943 115 8 8 chr3 8175286 8175976 -151423807 + IAPEY3-int LTR ERVK 6965 7680 0 2 647 308 0 0 0 chr3 8175976 8176013 -151423770 + RLTR10C LTR ERVK 1 37 -399 2 647 734 172 169 19 chr3 8176005 8176212 -151423571 + RMER17C LTR ERVK 173 410 0 2 647 609 269 15 15 chr3 8176213 8176345 -151423438 + B3A SINE B2 39 170 -28 2 647 36 23 0 0 chr3 8176368 8176411 -151423372 + AT_rich Low_complexity Low_complexity 1 43 0 2 647 22 0 0 0 chr3 8177098 8177120 -151422663 + AT_rich Low_complexity Low_complexity 1 22 0 2 647 917 294 71 3 chr3 8178159 8178453 -151421330 - MER2 DNA MER2_type -26 319 6 2 647 4394 94 23 0 chr3 8178488 8179137 -151420646 - L1_Mus1 LINE L1 -1 6566 5903 2 647 28537 117 11 1 chr3 8179119 8181812 -151417971 - L1Md_F LINE L1 -16 5867 3134 2 647 207 0 0 0 chr3 8181812 8181835 -151417948 + (TTG)n Simple_repeat Simple_repeat 2 24 0 2 647 28537 136 26 27 chr3 8181835 8184612 -151415171 - L1Md_F LINE L1 -2750 3133 377 2 647 37464 30 1 6 chr3 8184621 8190672 -151409111 - L1Md_T LINE L1 -3 6579 561 2 647 531 0 0 0 chr3 8190785 8190844 -151408939 + (GAAA)n Simple_repeat Simple_repeat 3 61 0 2 647 218 328 0 0 chr3 8191385 8191443 -151408340 + ID4 SINE ID 3 60 -23 2 647 22 35 0 0 chr3 8191469 8191498 -151408285 + AT_rich Low_complexity Low_complexity 1 29 0 2 647 3849 192 34 10 chr3 8192052 8192778 -151407005 + Lx5 LINE L1 6219 6962 -88 2 647 432 55 0 0 chr3 8192778 8192833 -151406950 + (GAAA)n Simple_repeat Simple_repeat 4 58 0 2 647 892 135 0 22 chr3 8192855 8193037 -151406746 + GA-rich Low_complexity Low_complexity 1 178 0 2 647 300 98 0 0 chr3 8193037 8193078 -151406705 + (GA)n Simple_repeat Simple_repeat 1 41 0 2 647 972 128 0 32 chr3 8193078 8193199 -151406584 + polypurine Low_complexity Low_complexity 1 121 0 2 647 1145 98 12 0 chr3 8193199 8193372 -151406411 + (GAAA)n Simple_repeat Simple_repeat 4 178 0 2 647 972 128 0 32 chr3 8193372 8193436 -151406347 + polypurine Low_complexity Low_complexity 122 180 0 2 647 195 72 23 45 chr3 8193437 8193481 -151406302 + (GAAA)n Simple_repeat Simple_repeat 4 46 0 2 647 578 218 49 74 chr3 8193495 8193738 -151406045 - Lx7 LINE L1 -17 7679 7443 2 647 716 130 6 0 chr3 8193738 8193899 -151405884 + (TAGA)n Simple_repeat Simple_repeat 1 162 0 2 647 4003 237 71 41 chr3 8193899 8195264 -151404519 - Lx7 LINE L1 -577 7119 5722 2 647 1420 238 17 11 chr3 8195301 8195654 -151404129 - Lx5 LINE L1 -8 7042 6688 2 647 762 127 8 0 chr3 8195648 8195782 -151404001 + L1_Mur2 LINE L1 3167 3301 -2576 2 647 12180 207 51 37 chr3 8195783 8197566 -151402217 - Lx7 LINE L1 -600 5280 3464 2 647 452 18 18 0 chr3 8197566 8197623 -151402160 + (TGG)n Simple_repeat Simple_repeat 1 58 0 2 647 12180 207 51 37 chr3 8197623 8198258 -151401525 - Lx7 LINE L1 -2417 3463 2807 2 647 396 0 0 0 chr3 8198258 8198302 -151401481 + (TTG)n Simple_repeat Simple_repeat 1 44 0 2 647 12180 207 51 37 chr3 8198302 8199042 -151400741 - Lx7 LINE L1 -3074 2806 2070 2 647 180 0 0 0 chr3 8199042 8199062 -151400721 + (TG)n Simple_repeat Simple_repeat 1 20 0 2 647 12180 207 51 37 chr3 8199062 8199426 -151400357 - Lx7 LINE L1 -3811 2069 1710 2 647 1384 328 65 36 chr3 8199538 8199998 -151399785 - L1_Mur3 LINE L1 -14 5866 5359 2 647 776 70 0 0 chr3 8199998 8200113 -151399670 - L1_Mus2 LINE L1 0 6566 6452 2 647 1384 328 60 38 chr3 8200113 8200903 -151398880 - L1_Mur3 LINE L1 -775 5368 4611 2 647 1364 241 65 31 chr3 8200914 8201270 -151398513 - ORR1D1 LTR MaLR -6 368 1 2 647 280 43 21 21 chr3 8201276 8201323 -151398460 + (TTG)n Simple_repeat Simple_repeat 2 48 0 2 647 22 0 0 0 chr3 8201587 8201609 -151398174 + AT_rich Low_complexity Low_complexity 1 22 0 2 647 7292 68 6 6 chr3 8203710 8204858 -151394925 - L1_Mus1 LINE L1 0 6567 5421 2 647 1909 65 0 0 chr3 8206230 8206476 -151393307 - Lx3_Mus LINE L1 -470 6539 6294 2 647 369 0 0 0 chr3 8206484 8206525 -151393258 + (TG)n Simple_repeat Simple_repeat 1 41 0 2 647 641 36 12 0 chr3 8206525 8206608 -151393175 + (GA)n Simple_repeat Simple_repeat 1 85 0 2 647 2827 178 174 56 chr3 8206608 8206860 -151392923 - RMER17B LTR ERVK -43 915 611 2 647 192 40 0 0 chr3 8206860 8206885 -151392898 + (TGGGGG)n Simple_repeat Simple_repeat 3 27 0 2 647 2827 178 174 56 chr3 8206885 8207437 -151392346 - RMER17B LTR ERVK -348 610 16 2 647 4525 92 7 28 chr3 8207453 8208294 -151391489 - Lx3_Mus LINE L1 -709 6300 5496 2 647 3264 110 6 2 chr3 8208296 8208768 -151391015 + Lx3_Mus LINE L1 6535 7008 -1 2 647 397 277 44 9 chr3 8208958 8209071 -151390712 - L2a LINE L2 -1 3425 3309 2 647 314 338 72 13 chr3 8209726 8209852 -151389931 + MER63D DNA AcHobo 273 402 -659 2 647 1194 67 6 0 chr3 8209852 8210016 -151389767 + L1_Mus2 LINE L1 6402 6566 0 2 647 314 338 72 13 chr3 8210016 8210042 -151389741 + MER63D DNA AcHobo 403 434 -627 2 647 219 349 0 15 chr3 8210062 8210129 -151389654 - RSINE1 SINE B4 -97 68 3 2 647 373 355 7 28 chr3 8210384 8210526 -151389257 - RSINE1 SINE B4 -12 153 15 2 647 2226 222 15 41 chr3 8210671 8211206 -151388577 + RLTR12B LTR ERVK 1 521 -7 2 647 489 276 52 109 chr3 8212340 8212588 -151387195 + MTEa LTR MaLR 126 359 -20 2 647 251 316 90 19 chr3 8212599 8212754 -151387029 + MLT1D LTR MaLR 73 238 -267 2 647 416 49 49 0 chr3 8212874 8212935 -151386848 + (ATATG)n Simple_repeat Simple_repeat 2 65 0 2 647 512 161 48 0 chr3 8213210 8213334 -151386449 - Lx9 LINE L1 -4 7640 7511 2 647 380 15 90 0 chr3 8214011 8214078 -151385705 + (TTTG)n Simple_repeat Simple_repeat 2 74 0 2 647 3206 201 20 19 chr3 8216498 8217584 -151382199 - L1VL4 LINE L1 -2437 1380 389 2 647 552 146 108 0 chr3 8217755 8217885 -151381898 - L1_Mur3 LINE L1 -2397 3483 3340 2 647 1920 176 31 109 chr3 8218429 8218913 -151380870 - RLTR41 LTR ERV1 0 446 1 2 647 5485 60 0 0 chr3 8218932 8219615 -151380168 - L1Md_T LINE L1 -1 6581 5899 2 647 2008 226 109 8 chr3 8219808 8220330 -151379453 - Lx5 LINE L1 -5 7045 6471 2 647 359 192 41 0 chr3 8220364 8220437 -151379346 + RMER13B LTR ERVK 2 77 -831 3 647 3414 144 14 5 chr3 8220437 8221016 -151378767 + MERVK26-int LTR ERVK 2279 2862 -4057 3 647 279 0 0 0 chr3 8221308 8221339 -151378444 + (TTTTTG)n Simple_repeat Simple_repeat 6 36 0 3 647 237 236 53 40 chr3 8221339 8221414 -151378369 + RLTR8 LTR ERVK 248 323 -42 3 647 856 83 25 0 chr3 8221419 8221540 -151378243 + MERVK26-int LTR ERVK 2986 3109 -3810 3 647 1540 89 0 23 chr3 8221543 8221761 -151378022 - MTB_Mm LTR MaLR -194 213 1 3 647 17594 137 36 4 chr3 8221763 8224702 -151375081 + MERVK26-int LTR ERVK 3290 6320 -599 3 647 275 71 24 0 chr3 8224702 8224744 -151375039 + (GGGA)n Simple_repeat Simple_repeat 3 45 0 3 647 2146 64 26 20 chr3 8224762 8225067 -151374716 - IAPLTR2b LTR ERVK -20 307 1 3 647 17214 62 14 39 chr3 8225067 8227544 -151372239 - IAPEz-int LTR ERVK 0 6481 4067 3 647 14084 118 39 26 chr3 8227540 8229979 -151369804 - IAPEz-int LTR ERVK -3816 2665 21 3 647 2043 92 27 20 chr3 8229995 8230295 -151369488 - IAPLTR2b LTR ERVK -20 307 6 3 647 324 0 0 0 chr3 8230296 8230332 -151369451 + (CA)n Simple_repeat Simple_repeat 1 36 0 3 647 528 16 0 0 chr3 8230332 8230392 -151369391 + (GA)n Simple_repeat Simple_repeat 2 62 0 3 647 3452 147 43 10 chr3 8230392 8230968 -151368815 + MERVK26-int LTR ERVK 6321 6915 -4 3 647 596 262 162 20 chr3 8230985 8231245 -151368538 + RLTR26 LTR ERVK 7 331 -311 3 647 348 313 0 17 chr3 8231430 8231547 -151368236 + PB1D10 SINE Alu 3 117 0 3 647 951 103 32 6 chr3 8231815 8231972 -151367811 - L1_Mus3 LINE L1 -7 6631 6471 3 647 21 89 0 0 chr3 8232090 8232146 -151367637 + AT_rich Low_complexity Low_complexity 1 56 0 3 647 22 0 0 0 chr3 8232913 8232935 -151366848 + AT_rich Low_complexity Low_complexity 1 22 0 3 647 1115 96 0 0 chr3 8232959 8233105 -151366678 + B1_Mus1 SINE Alu 3 148 0 3 647 225 0 0 0 chr3 8233105 8233130 -151366653 + (A)n Simple_repeat Simple_repeat 1 25 0 3 647 372 317 68 14 chr3 8233545 8233692 -151366091 + MER58B DNA MER1_type 181 335 -6 3 647 440 374 44 11 chr3 8235507 8235581 -151364202 - B3 SINE B2 -28 188 115 3 647 5139 75 1 12 chr3 8235581 8236269 -151363514 - L1Md_F2 LINE L1 0 6582 5902 3 647 440 374 44 11 chr3 8236269 8236375 -151363408 - B3 SINE B2 -102 114 4 3 647 2011 238 49 0 chr3 8236430 8236963 -151362820 - RCHARR1 DNA MER1_type -69 905 347 3 647 7022 70 6 32 chr3 8236997 8237831 -151361952 - L1_Mus1 LINE L1 0 6567 5759 3 647 3864 53 22 12 chr3 8237831 8238330 -151361453 - L1Md_F2 LINE L1 -8 6574 6071 3 647 7022 89 3 39 chr3 8238330 8238929 -151360854 - L1_Mus1 LINE L1 -125 5758 5159 3 647 783 289 128 8 chr3 8238929 8239187 -151360596 - RCHARR1 DNA MER1_type -630 344 56 3 647 4217 166 74 12 chr3 8239444 8240307 -151359476 + Lx4B LINE L1 6011 6927 -131 3 647 390 313 141 40 chr3 8240345 8240621 -151359162 + MLT1A0 LTR MaLR 17 320 -45 3 647 2954 38 0 0 chr3 8241299 8241645 -151358138 + ORR1A0 LTR MaLR 1 346 0 3 647 14426 47 2 1 chr3 8241645 8243435 -151356348 + ORR1A0-int LTR MaLR 1 1792 0 3 647 2950 40 0 0 chr3 8243435 8243781 -151356002 + ORR1A0 LTR MaLR 1 346 0 3 647 413 204 30 0 chr3 8243781 8243913 -151355870 + (TA)n Simple_repeat Simple_repeat 1 136 0 3 647 1527 6 5 16 chr3 8244249 8244479 -151355304 + L1Md_F3 LINE L1 6387 6584 0 3 647 216 97 0 0 chr3 8244479 8244510 -151355273 + (CAGG)n Simple_repeat Simple_repeat 2 32 0 3 647 889 99 7 14 chr3 8244511 8244655 -151355128 + (GAAA)n Simple_repeat Simple_repeat 4 146 0 3 647 494 87 0 32 chr3 8244838 8244933 -151354850 + (T)n Simple_repeat Simple_repeat 1 92 0 3 647 361 141 0 0 chr3 8244937 8244996 -151354787 - B1_Mus2 SINE Alu -90 59 1 3 647 247 173 12 12 chr3 8245004 8245047 -151354736 + (TAAA)n Simple_repeat Simple_repeat 3 45 0 3 647 1101 68 7 7 chr3 8245047 8245194 -151354589 + B1_Mm SINE Alu 1 147 0 3 647 247 173 12 12 chr3 8245194 8245232 -151354551 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 3 647 393 126 122 33 chr3 8245271 8245361 -151354422 - RMER17B LTR ERVK -495 463 366 3 647 914 163 49 27 chr3 8245408 8245570 -151354213 + B2_Mm2 SINE B2 9 170 -25 3 647 1156 81 0 0 chr3 8245570 8245718 -151354065 + B1_Mus1 SINE Alu 1 148 0 3 647 914 163 49 27 chr3 8245718 8245738 -151354045 + B2_Mm2 SINE B2 171 195 0 3 647 207 0 0 0 chr3 8245746 8245769 -151354014 + (CAAAC)n Simple_repeat Simple_repeat 2 24 0 3 647 414 0 0 0 chr3 8246122 8246168 -151353615 + (TTTTA)n Simple_repeat Simple_repeat 4 49 0 3 647 318 26 0 0 chr3 8246201 8246240 -151353543 + (GGGA)n Simple_repeat Simple_repeat 4 42 0 3 647 459 230 275 12 chr3 8246956 8247123 -151352660 + B3 SINE B2 1 211 -5 3 647 585 159 62 0 chr3 8247709 8247822 -151351961 - L1_Mus4 LINE L1 -270 6366 6247 3 647 1262 103 21 0 chr3 8247822 8248016 -151351767 + L1_Mus4 LINE L1 6421 6618 -18 3 647 24 0 0 0 chr3 8248427 8248451 -151351332 + AT_rich Low_complexity Low_complexity 1 24 0 3 647 1967 201 84 10 chr3 8249272 8249760 -151350023 + RLTR11A2 LTR ERVK 4 527 0 3 647 4758 152 98 112 chr3 8249917 8250092 -151349691 - RLTR25A LTR ERVK 0 1103 937 3 647 947 9 9 0 chr3 8250092 8250204 -151349579 + (TTC)n Simple_repeat Simple_repeat 2 114 0 3 647 4758 152 98 112 chr3 8250204 8250331 -151349452 - RLTR25A LTR ERVK -167 936 893 3 647 687 90 0 0 chr3 8250331 8250431 -151349352 + (TC)n Simple_repeat Simple_repeat 2 101 0 3 647 4758 152 98 112 chr3 8250431 8250939 -151348844 - RLTR25A LTR ERVK -211 892 313 3 647 1438 61 18 32 chr3 8250939 8251158 -151348625 - L1_Mus3 LINE L1 -9 6629 6414 3 647 4758 152 98 112 chr3 8251158 8251451 -151348332 - RLTR25A LTR ERVK -791 312 14 3 647 2068 307 54 15 chr3 8253104 8253888 -151345895 - Lx7 LINE L1 -393 7303 6490 3 647 422 162 0 0 chr3 8253888 8253956 -151345827 - ORR1C1 LTR MaLR 0 329 262 3 647 514 150 0 0 chr3 8253930 8254032 -151345751 - ORR1C1 LTR MaLR -218 108 7 3 647 8228 163 37 126 chr3 8254031 8255981 -151343802 - ORR1C1-int LTR MaLR -5 1958 182 3 647 2442 17 0 0 chr3 8255981 8256273 -151343510 - L1Md_F2 LINE L1 -642 5940 5649 3 647 4996 55 5 9 chr3 8256275 8256918 -151342865 + L1Md_F2 LINE L1 5943 6582 0 3 648 24 32 0 0 chr3 8258027 8258058 -151341725 + AT_rich Low_complexity Low_complexity 1 31 0 3 648 5379 111 19 11 chr3 8258123 8259192 -151340591 - L1_Mus3 LINE L1 -1 6637 5486 3 648 1792 209 46 0 chr3 8259288 8259637 -151340146 - ORR1C1 LTR MaLR -8 370 6 3 648 181 310 136 11 chr3 8259905 8259993 -151339790 + MIR3 SINE MIR 109 207 -1 3 648 985 319 10 7 chr3 8260781 8261084 -151338699 + MLT1A0 LTR MaLR 74 368 -6 3 648 22 35 0 0 chr3 8261347 8261376 -151338407 + AT_rich Low_complexity Low_complexity 1 29 0 3 648 239 373 25 56 chr3 8261512 8261674 -151338109 - MER77 LTR ERVL -6 601 445 3 648 1668 227 31 4 chr3 8262515 8262970 -151336813 - L1_Mur3 LINE L1 -48 5832 5366 3 648 31 0 0 0 chr3 8262970 8263001 -151336782 + AT_rich Low_complexity Low_complexity 1 31 0 3 648 9446 143 67 39 chr3 8264109 8265905 -151333878 + RLTR22_Mur LTR ERVK 3 1848 0 3 648 271 319 257 12 chr3 8266292 8266463 -151333320 - MER20 DNA MER1_type -6 213 1 3 648 508 318 92 18 chr3 8266771 8266989 -151332794 + MTEa-int LTR MaLR 1335 1568 -12 3 648 1158 263 42 71 chr3 8266967 8267348 -151332435 + MTEa LTR MaLR 10 379 0 3 648 857 211 13 13 chr3 8267416 8267565 -151332218 - B1_Mur1 SINE Alu 0 149 1 3 648 1566 39 0 0 chr3 8267783 8268090 -151331693 + (TTC)n Simple_repeat Simple_repeat 1 307 0 3 648 685 316 9 113 chr3 8268945 8269273 -151330510 + MTEa LTR MaLR 82 375 -4 3 648 1174 58 0 0 chr3 8271419 8271558 -151328225 + B1_Mus2 SINE Alu 1 139 -8 3 648 648 119 25 0 chr3 8271562 8271680 -151328103 + (GGA)n Simple_repeat Simple_repeat 3 123 0 3 648 420 20 0 0 chr3 8272026 8272075 -151327708 + (TA)n Simple_repeat Simple_repeat 1 49 0 3 648 621 327 49 63 chr3 8272116 8272576 -151327207 - L1_Mur3 LINE L1 -119 5761 5309 3 648 2902 106 12 2 chr3 8272576 8272983 -151326800 - RLTR10A LTR ERVK 0 411 1 3 648 621 327 49 63 chr3 8272983 8273152 -151326631 - L1_Mur3 LINE L1 -572 5308 5141 3 648 6886 78 16 7 chr3 8273170 8274498 -151325285 - L1Md_F2 LINE L1 -6 6576 5248 3 648 279 0 0 0 chr3 8274498 8274529 -151325254 + (TA)n Simple_repeat Simple_repeat 2 32 0 3 648 5361 75 24 1 chr3 8274529 8274658 -151325125 - L1Md_F2 LINE L1 -636 5247 5108 3 648 186 133 0 0 chr3 8275056 8275086 -151324697 + (TA)n Simple_repeat Simple_repeat 2 31 0 3 648 259 416 18 47 chr3 8275286 8275455 -151324328 - MLT1E1 LTR MaLR -185 469 306 3 648 1059 45 0 0 chr3 8275540 8275673 -151324110 + (GGAA)n Simple_repeat Simple_repeat 3 135 0 3 648 450 120 0 0 chr3 8276370 8276445 -151323338 + (TG)n Simple_repeat Simple_repeat 2 76 0 3 648 858 259 134 41 chr3 8276445 8276473 -151323310 - B4 SINE B4 -23 269 245 3 648 3040 29 0 0 chr3 8276473 8276819 -151322964 - ORR1A0 LTR MaLR 0 346 1 3 648 858 259 134 41 chr3 8276819 8277036 -151322747 - B4 SINE B4 -48 244 1 3 648 441 0 0 0 chr3 8277588 8277637 -151322146 + (TG)n Simple_repeat Simple_repeat 2 50 0 3 648 309 286 18 71 chr3 8277706 8277819 -151321964 - B4A SINE B4 0 292 186 3 648 239 349 9 52 chr3 8277782 8277897 -151321886 - PB1D10 SINE Alu -5 112 3 3 648 22 0 0 0 chr3 8277995 8278017 -151321766 + AT_rich Low_complexity Low_complexity 1 22 0 3 648 7053 32 8 1 chr3 8280038 8280924 -151318859 - L1Md_F2 LINE L1 -3 6579 5688 3 648 5220 57 0 0 chr3 8280923 8281604 -151318179 + L1Md_F2 LINE L1 5029 5709 -174 3 648 244 200 59 44 chr3 8283260 8283317 -151316466 - MLT2B3 LTR ERVL 0 562 501 3 648 1096 43 24 6 chr3 8283317 8283481 -151316302 + (TAGA)n Simple_repeat Simple_repeat 3 169 0 3 648 212 262 12 12 chr3 8283495 8283580 -151316203 + (CATATA)n Simple_repeat Simple_repeat 4 88 0 3 648 322 326 20 41 chr3 8283602 8283749 -151316034 - MT2A LTR ERVL -107 426 283 3 648 277 316 20 59 chr3 8283856 8283957 -151315826 - MLT2B5 LTR ERVL -443 274 178 3 648 28 71 0 0 chr3 8284347 8284403 -151315380 + AT_rich Low_complexity Low_complexity 1 56 0 3 648 26 30 0 0 chr3 8286840 8286873 -151312910 + AT_rich Low_complexity Low_complexity 1 33 0 3 648 219 380 66 0 chr3 8287514 8287635 -151312148 + L2b LINE L2 3247 3375 0 3 648 398 331 91 102 chr3 8287718 8288004 -151311779 + ORR1E LTR MaLR 1 277 -82 3 648 1595 168 40 20 chr3 8288004 8288356 -151311427 - RLTR15 LTR ERVK 0 359 1 3 648 398 331 91 102 chr3 8288356 8288432 -151311351 + ORR1E LTR MaLR 278 359 0 3 648 186 43 0 0 chr3 8288447 8288470 -151311313 + (T)n Simple_repeat Simple_repeat 1 23 0 3 648 450 314 95 92 chr3 8290240 8290587 -151309196 + MLT1A0 LTR MaLR 1 348 -17 3 648 26 0 0 0 chr3 8290897 8290923 -151308860 + AT_rich Low_complexity Low_complexity 1 26 0 3 648 340 251 47 76 chr3 8291290 8291501 -151308282 + MER33 DNA MER1_type 24 228 -96 3 648 358 232 59 12 chr3 8291480 8291650 -151308133 + MER33 DNA MER1_type 136 313 -11 3 648 758 303 84 62 chr3 8292982 8293417 -151306366 + MLT2B4 LTR ERVL 62 514 -6 3 648 1243 212 186 87 chr3 8293681 8294166 -151305617 - MT2A LTR ERVL 0 533 1 3 648 22904 140 54 66 chr3 8295183 8297737 -151302046 + L1Md_F2 LINE L1 222 2889 -2994 3 648 720 0 0 0 chr3 8297737 8297817 -151301966 + (GAAA)n Simple_repeat Simple_repeat 1 80 0 3 648 22904 110 22 93 chr3 8297817 8300869 -151298914 + L1Md_F2 LINE L1 2890 5586 -297 3 648 8009 50 2 1 chr3 8300869 8301864 -151297919 + L1Md_F2 LINE L1 5587 6582 0 3 648 4960 109 2 83 chr3 8301864 8302124 -151297659 + L1_Mm LINE L1 4733 4938 -945 4 648 4203 45 6 0 chr3 8302124 8302631 -151297152 - L1Md_F3 LINE L1 0 6584 6075 4 648 225 0 0 0 chr3 8302631 8302656 -151297127 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 4 648 1086 80 0 0 chr3 8302656 8302794 -151296989 - B1_Mus2 SINE Alu -9 138 1 4 648 4960 109 2 83 chr3 8302794 8303442 -151296341 + L1_Mm LINE L1 4939 5567 -316 4 648 551 188 90 39 chr3 8303442 8303460 -151296323 - ORR1C1 LTR MaLR -231 163 148 4 648 7331 67 14 40 chr3 8303460 8304472 -151295311 + L1Md_F2 LINE L1 5588 6582 0 4 648 824 126 7 7 chr3 8304472 8304591 -151295192 - ORR1C1 LTR MaLR -242 136 17 4 648 6975 143 22 3 chr3 8304591 8305744 -151294039 - Lx2 LINE L1 -1 6996 5821 4 648 824 126 7 7 chr3 8305744 8305760 -151294023 - ORR1C1 LTR MaLR -362 16 1 4 648 1199 284 142 43 chr3 8305760 8306856 -151292927 - Lx9 LINE L1 -285 7359 6156 4 648 329 187 0 13 chr3 8307873 8307949 -151291834 + (CCA)n Simple_repeat Simple_repeat 1 75 0 4 648 525 32 0 0 chr3 8308290 8308353 -151291430 + (CA)n Simple_repeat Simple_repeat 2 64 0 4 648 7025 67 10 0 chr3 8308355 8309239 -151290544 - RLTR13B1 LTR ERVK 0 893 1 4 648 289 179 0 37 chr3 8309256 8309337 -151290446 + (CATA)n Simple_repeat Simple_repeat 2 79 0 4 648 342 224 28 14 chr3 8309377 8309522 -151290261 + (CATA)n Simple_repeat Simple_repeat 4 150 0 4 648 757 327 18 14 chr3 8310437 8310716 -151289067 + B4A SINE B4 1 280 -12 4 648 183 347 27 14 chr3 8311202 8311275 -151288508 - MIR3 SINE MIR -52 156 83 4 648 419 243 26 51 chr3 8311667 8311784 -151287999 + PB1D10 SINE Alu 3 116 -1 4 648 573 15 0 0 chr3 8312009 8312075 -151287708 + (GGAA)n Simple_repeat Simple_repeat 4 69 0 4 648 392 37 19 0 chr3 8312075 8312129 -151287654 + (GA)n Simple_repeat Simple_repeat 2 56 0 4 648 1213 79 11 6 chr3 8312129 8312308 -151287475 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 4 648 4395 101 3 14 chr3 8312518 8313150 -151286633 - Lx3_Mus LINE L1 -5 7004 6380 4 648 460 349 62 70 chr3 8313561 8313918 -151285865 + ORR1E LTR MaLR 1 354 -5 4 648 672 214 0 0 chr3 8314077 8314203 -151285580 - Lx9 LINE L1 -808 6836 6711 4 648 194 0 39 0 chr3 8315116 8315142 -151284641 + (GAGAA)n Simple_repeat Simple_repeat 1 27 0 4 648 1308 79 0 0 chr3 8315142 8315320 -151284463 + (GGGAA)n Simple_repeat Simple_repeat 3 180 0 4 648 315 0 0 0 chr3 8315320 8315355 -151284428 + (GAGAA)n Simple_repeat Simple_repeat 1 35 0 4 648 906 232 212 19 chr3 8316348 8316669 -151283114 - ORR1C2 LTR MaLR -1 383 1 4 648 256 359 90 68 chr3 8316974 8317240 -151282543 - ORR1E LTR MaLR -43 316 45 4 648 356 200 27 9 chr3 8317430 8317541 -151282242 + GA-rich Low_complexity Low_complexity 2 114 0 4 648 743 197 71 0 chr3 8318540 8318779 -151281004 + L1_Mur2 LINE L1 892 1143 -6585 4 648 4453 155 68 45 chr3 8318779 8319711 -151280072 + RMER17B LTR ERVK 1 953 -5 4 648 249 199 74 17 chr3 8319729 8319877 -151279906 + L1_Mur2 LINE L1 1096 1256 -5830 4 648 727 206 65 0 chr3 8320362 8320576 -151279207 + L1_Mur2 LINE L1 1250 1477 -4400 4 648 767 294 153 54 chr3 8320578 8321041 -151278742 - RLTR20A2 LTR ERVK -1 577 69 4 648 2389 114 47 2 chr3 8321044 8321450 -151278333 + L1_Mm LINE L1 4883 5306 -577 4 648 7848 100 8 3 chr3 8321447 8323531 -151276252 + L1VL1 LINE L1 426 2523 -3360 4 648 5689 44 18 1 chr3 8323540 8324245 -151275538 - L1Md_F3 LINE L1 0 6584 5868 4 648 5013 50 3 0 chr3 8324245 8324905 -151274878 + L1_Mm LINE L1 4768 5429 -454 4 648 8319 124 1 1 chr3 8324887 8326246 -151273537 + L1VL1 LINE L1 2511 3869 -2014 4 648 4474 140 67 9 chr3 8326246 8327252 -151272531 + L1Md_F2 LINE L1 208 1267 -5457 4 648 629 58 12 0 chr3 8330440 8330526 -151269257 + (GAAA)n Simple_repeat Simple_repeat 2 88 0 4 648 16447 130 24 12 chr3 8330526 8335703 -151264080 + L1Md_F2 LINE L1 1264 6557 -25 4 648 2461 135 11 195 chr3 8335708 8336359 -151263424 + Lx2 LINE L1 5286 5819 -64 4 648 3073 99 34 11 chr3 8336359 8336807 -151262976 + L1_Mus3 LINE L1 6180 6637 -1 4 648 2461 141 65 64 chr3 8336807 8337148 -151262635 + Lx2 LINE L1 5813 6175 -822 4 648 342 0 0 0 chr3 8337817 8337855 -151261928 + (CA)n Simple_repeat Simple_repeat 2 39 0 4 648 3984 138 17 3 chr3 8338309 8339020 -151260763 + L1Md_A LINE L1 416 1136 -5588 4 648 3497 57 5 0 chr3 8339020 8339458 -151260325 + L1Md_F2 LINE L1 6129 6568 -14 4 648 712 299 23 0 chr3 8339608 8339785 -151259998 + B4A SINE B4 1 181 -111 4 648 345 24 0 0 chr3 8339833 8339875 -151259908 + (CA)n Simple_repeat Simple_repeat 2 43 0 4 648 21 0 0 0 chr3 8339897 8339918 -151259865 + AT_rich Low_complexity Low_complexity 1 21 0 4 648 2053 252 39 28 chr3 8340070 8340682 -151259101 + Lx6 LINE L1 6507 7125 -335 4 648 2614 81 24 97 chr3 8340683 8341136 -151258647 - BGLII LTR ERVK -1 420 1 4 648 2887 205 39 49 chr3 8341137 8342072 -151257711 - RMER3D-int LTR ERVK -1 2841 1917 4 648 607 166 32 70 chr3 8342070 8342226 -151257557 - RMER3D-int LTR ERVK -1152 1690 1541 4 648 1709 207 117 56 chr3 8342267 8343097 -151256686 - RMER3D-int LTR ERVK -1310 1532 652 4 648 649 218 0 44 chr3 8343130 8343336 -151256447 - RMER3D-int LTR ERVK -1994 848 652 4 648 6498 55 2 13 chr3 8343450 8344278 -151255505 + L1_Mus2 LINE L1 5747 6565 -1 4 648 21 57 0 0 chr3 8344278 8344313 -151255470 + AT_rich Low_complexity Low_complexity 1 35 0 4 648 1362 156 27 19 chr3 8344552 8344813 -151254970 - BGLII LTR ERVK 0 421 159 4 648 1535 121 8 23 chr3 8344817 8345080 -151254703 - BGLII LTR ERVK -162 259 1 4 648 1113 248 39 13 chr3 8345090 8345397 -151254386 + Lx6 LINE L1 7130 7444 -16 4 648 7284 76 50 1 chr3 8345673 8346744 -151253039 - MusHAL1 LINE L1 -147 2565 1443 4 648 259 366 171 43 chr3 8347338 8347595 -151252188 + B4A SINE B4 3 292 0 4 648 224 337 89 59 chr3 8347685 8347786 -151251997 - PB1D9 SINE Alu -1 119 16 4 648 364 176 44 0 chr3 8348139 8348207 -151251576 - MTEa LTR MaLR -307 72 2 4 648 342 0 0 0 chr3 8349446 8349484 -151250299 + (TAAA)n Simple_repeat Simple_repeat 2 39 0 4 648 22 56 0 0 chr3 8350314 8350350 -151249433 + AT_rich Low_complexity Low_complexity 1 36 0 4 648 2396 251 93 15 chr3 8350466 8350552 -151249231 - RMER1B Other Other -3 1063 956 4 648 306 0 0 0 chr3 8350552 8350586 -151249197 + (CA)n Simple_repeat Simple_repeat 2 35 0 4 648 3498 254 34 32 chr3 8350586 8351767 -151248016 - RMER1A Other Other -163 867 1 4 648 1697 157 313 32 chr3 8352163 8352812 -151246971 - RMER6A LTR ERVK -36 720 1 4 648 300 161 0 0 chr3 8353022 8353084 -151246699 + (CATA)n Simple_repeat Simple_repeat 2 63 0 4 648 327 134 60 12 chr3 8353084 8353221 -151246562 + (TAGA)n Simple_repeat Simple_repeat 1 143 0 4 648 3611 64 0 8 chr3 8353871 8354346 -151245437 + L1Md_F3 LINE L1 6113 6583 -1 4 648 390 253 0 0 chr3 8354476 8354551 -151245232 - ID4_ SINE ID 0 83 9 4 648 226 167 0 0 chr3 8354624 8354684 -151245099 - MT2B LTR ERVL -8 525 466 4 648 240 35 0 0 chr3 8354684 8354713 -151245070 + (CATA)n Simple_repeat Simple_repeat 2 30 0 4 648 967 219 42 80 chr3 8354714 8355049 -151244734 - MT2B LTR ERVL -55 546 213 4 648 274 333 53 30 chr3 8355108 8355241 -151244542 - RLTR24 LTR ERV1 -75 454 319 4 648 246 296 14 0 chr3 8355370 8355441 -151244342 - RLTR24 LTR ERV1 -455 74 3 4 648 494 134 16 3 chr3 8355471 8355558 -151244225 - MT2B LTR ERVL -445 88 1 4 648 22 56 0 0 chr3 8355579 8355615 -151244168 + AT_rich Low_complexity Low_complexity 1 36 0 4 648 240 294 100 9 chr3 8356279 8356389 -151243394 - LTR81B LTR ERV1? -84 1309 1190 4 648 429 306 87 51 chr3 8357130 8357405 -151242378 - LTR81B LTR ERV1? -1102 291 7 4 648 226 336 141 41 chr3 8357668 8357910 -151241873 + L3 LINE CR1 4125 4390 -99 4 648 1211 267 39 34 chr3 8358729 8359144 -151240639 + MTD LTR MaLR 3 419 0 4 648 2183 120 19 29 chr3 8359361 8359740 -151240043 + L1_Mus4 LINE L1 6261 6635 -1 4 648 1600 16 22 0 chr3 8359982 8360167 -151239616 - B2_Mm1a SINE B2 0 193 5 4 648 332 311 85 89 chr3 8360293 8360332 -151239451 + MTEa LTR MaLR 20 58 -321 4 648 1193 43 0 0 chr3 8360332 8360473 -151239310 + B1_Mus2 SINE Alu 1 141 -6 4 648 852 29 0 0 chr3 8360475 8360578 -151239205 + (GAAA)n Simple_repeat Simple_repeat 2 104 0 4 648 552 294 163 52 chr3 8360578 8360829 -151238954 + MTEa LTR MaLR 59 337 -42 4 648 28963 111 12 3 chr3 8360829 8366724 -151233059 - L1_Mus2 LINE L1 -1 6565 184 4 648 620 304 107 60 chr3 8366994 8367327 -151232456 - MLT2B3 LTR ERVL -16 538 94 4 648 360 0 0 0 chr3 8367327 8367367 -151232416 + (CA)n Simple_repeat Simple_repeat 2 41 0 4 648 620 205 172 13 chr3 8367367 8367527 -151232256 - MLT2B3 LTR ERVL -545 172 1 4 648 210 309 14 56 chr3 8368451 8368523 -151231260 - L4 LINE RTE -704 1325 1257 4 648 1013 194 9 37 chr3 8368949 8369163 -151230620 - RMER6B LTR ERVK -6 455 248 4 648 383 135 107 13 chr3 8369381 8369453 -151230330 - RMER6B LTR ERVK -300 161 83 4 648 2055 126 40 45 chr3 8369453 8369852 -151229931 - RMER17A LTR ERVK 0 751 355 4 648 8265 108 48 19 chr3 8369855 8371862 -151227921 - L1_Mur1 LINE L1 -3424 2462 65 4 648 226 307 115 66 chr3 8372455 8372577 -151227206 - Tigger5 DNA MER2_type -2277 129 2 4 648 457 210 32 0 chr3 8372673 8372797 -151226986 - Lx9 LINE L1 0 7644 7517 4 648 266 349 98 27 chr3 8372812 8373036 -151226747 - LTR33A_ LTR ERVL -2 529 290 4 648 266 302 57 49 chr3 8373511 8373633 -151226150 + MamGypLTR1c LTR Gypsy 135 257 -546 4 648 307 378 82 45 chr3 8374120 8374411 -151225372 + AmnSINE1 SINE SINE 168 469 -106 4 648 294 365 28 9 chr3 8375017 8375125 -151224658 + ORR1E LTR MaLR 9 118 -241 4 648 444 191 0 0 chr3 8375415 8375504 -151224279 + (TA)n Simple_repeat Simple_repeat 1 89 0 4 648 2359 93 6 15 chr3 8376068 8376408 -151223375 - L1_Mus3 LINE L1 -4 6634 6298 4 648 1596 103 0 90 chr3 8376670 8376948 -151222835 + L1Md_F2 LINE L1 6318 6570 -12 4 648 317 327 49 56 chr3 8377374 8377536 -151222247 + RSINE1 SINE B4 3 163 -2 4 648 21 0 0 0 chr3 8377561 8377582 -151222201 + AT_rich Low_complexity Low_complexity 1 21 0 4 648 21 36 0 0 chr3 8378034 8378062 -151221721 + AT_rich Low_complexity Low_complexity 1 28 0 4 648 1617 60 0 5 chr3 8379051 8379267 -151220516 - L1_Mus4 LINE L1 -7 6629 6415 4 648 5538 82 1 0 chr3 8379894 8380662 -151219121 - L1_Mus4 LINE L1 -216 6420 5652 4 648 7660 156 16 1 chr3 8380658 8382058 -151217725 + L1_Mm LINE L1 3947 5367 -516 4 648 1436 40 0 0 chr3 8382058 8382234 -151217549 + MTB LTR MaLR 225 400 0 4 648 235 350 0 0 chr3 8382814 8382894 -151216889 - Lx8 LINE L1 -680 6793 6714 4 648 230 300 50 0 chr3 8382941 8383021 -151216762 - Lx8 LINE L1 -546 6927 6844 5 648 342 0 0 0 chr3 8383220 8383258 -151216525 + (CA)n Simple_repeat Simple_repeat 2 39 0 5 648 1885 99 31 22 chr3 8383519 8383838 -151215945 - RLTRETN_Mm LTR ERVK 0 322 1 5 1 17471 146 25 18 chr3 8383838 8390655 -151209128 - ETnERV2-int LTR ERVK -172 7234 19 5 649 581 251 46 97 chr3 8390655 8390673 -151209110 + B4A SINE B4 88 102 -190 5 649 1857 103 31 25 chr3 8390673 8390993 -151208790 - RLTRETN_Mm LTR ERVK 0 322 1 5 649 581 251 46 97 chr3 8390993 8391190 -151208593 + B4A SINE B4 103 292 0 5 649 252 0 0 0 chr3 8391196 8391224 -151208559 + (CA)n Simple_repeat Simple_repeat 2 29 0 5 649 11179 8 1 0 chr3 8391413 8393361 -151206422 - L1Md_A LINE L1 -3933 1950 2 5 649 5400 88 18 15 chr3 8393358 8394828 -151204955 - MusHAL1 LINE L1 -1874 1479 4 5 649 542 312 93 55 chr3 8394993 8395851 -151203932 + L1MC3 LINE L1 6881 7771 -14 5 649 784 333 67 14 chr3 8395931 8396427 -151203356 - ERVL-E-int LTR ERVL -2847 2820 2299 5 649 287 179 0 15 chr3 8397393 8397461 -151202322 + (TA)n Simple_repeat Simple_repeat 2 68 0 5 649 1325 19 0 0 chr3 8397875 8398035 -151201748 + L1Md_A LINE L1 6423 6582 0 5 649 4873 30 0 0 chr3 8400076 8400683 -151199100 + L1Md_F2 LINE L1 4980 5586 -297 5 649 7961 48 2 8 chr3 8400683 8401683 -151198100 + L1Md_F2 LINE L1 5587 6580 -2 5 649 208 0 0 59 chr3 8402293 8402327 -151197456 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 5 649 24 0 0 0 chr3 8402496 8402520 -151197263 + AT_rich Low_complexity Low_complexity 1 24 0 5 649 361 362 0 58 chr3 8402564 8402737 -151197046 + RSINE1 SINE B4 3 165 0 5 649 389 103 15 0 chr3 8403027 8403095 -151196688 + (TAGA)n Simple_repeat Simple_repeat 4 72 0 5 649 474 120 0 0 chr3 8403140 8403215 -151196568 + (TA)n Simple_repeat Simple_repeat 2 76 0 5 649 512 234 42 21 chr3 8403229 8403373 -151196410 + B1F2 SINE Alu 3 149 0 5 649 4981 55 2 0 chr3 8403376 8403996 -151195787 + L1Md_F2 LINE L1 5962 6582 0 5 649 25 0 0 0 chr3 8404472 8404497 -151195286 + AT_rich Low_complexity Low_complexity 1 25 0 5 649 29349 103 7 8 chr3 8404498 8408326 -151191457 - L1_Mus1 LINE L1 -1 6566 2757 5 649 3108 29 56 3 chr3 8408326 8408702 -151191081 + MTA_Mm LTR MaLR 1 396 0 5 649 29349 115 33 9 chr3 8408702 8411003 -151188780 - L1_Mus1 LINE L1 -3127 2756 389 5 649 1074 102 95 11 chr3 8411205 8411384 -151188399 + B2_Mm2 SINE B2 1 194 -1 5 649 357 24 0 0 chr3 8411666 8411708 -151188075 + (TG)n Simple_repeat Simple_repeat 2 43 0 5 649 184 326 121 43 chr3 8412502 8412643 -151187140 + MIR SINE MIR 100 251 -11 5 649 736 335 59 21 chr3 8412791 8413078 -151186705 + MER68 LTR ERVL 193 490 -73 5 649 26 0 0 0 chr3 8413082 8413108 -151186675 + AT_rich Low_complexity Low_complexity 1 26 0 5 649 192 77 0 0 chr3 8414018 8414044 -151185739 + (TA)n Simple_repeat Simple_repeat 2 27 0 5 649 1689 239 177 40 chr3 8415121 8415800 -151183983 - RMER1B Other Other -256 810 39 5 649 334 244 11 0 chr3 8416164 8416254 -151183529 - RMER1B Other Other -915 151 61 5 649 240 309 16 24 chr3 8416433 8416559 -151183224 + GA-rich Low_complexity Low_complexity 2 126 0 5 649 1292 243 129 0 chr3 8416626 8416997 -151182786 + MTD LTR MaLR 1 419 0 5 649 2212 157 42 3 chr3 8417073 8417450 -151182333 + ORR1B1 LTR MaLR 3 394 0 5 649 421 281 157 21 chr3 8417592 8417671 -151182112 + L1MA7 LINE L1 5694 5780 -511 5 649 858 128 0 0 chr3 8417671 8417820 -151181963 + (TAGA)n Simple_repeat Simple_repeat 2 150 0 5 649 421 281 157 21 chr3 8417820 8418115 -151181668 + L1MA7 LINE L1 5781 6118 -173 5 649 7182 62 8 24 chr3 8418413 8419409 -151180374 + L1_Mus2 LINE L1 5587 6566 0 5 649 328 244 175 24 chr3 8419752 8419878 -151179905 - MER3 DNA MER1_type -61 148 4 5 649 2734 53 18 0 chr3 8420742 8421082 -151178701 - ORR1A1 LTR MaLR 0 346 1 5 649 999 232 133 8 chr3 8421555 8421692 -151178091 + L1_Mur2 LINE L1 915 1051 -6035 5 649 503 74 0 12 chr3 8421692 8421774 -151178009 + L1_Mus2 LINE L1 6486 6566 0 5 649 4404 221 34 75 chr3 8421774 8423533 -151176250 + L1_Mur2 LINE L1 1052 2770 -3107 5 649 1803 85 11 0 chr3 8423534 8423805 -151175978 + L1_Mur2 LINE L1 4348 4621 -1256 5 649 238 156 0 0 chr3 8423818 8423863 -151175920 + L1_Mur2 LINE L1 4888 4932 -954 5 649 24065 171 40 28 chr3 8423863 8425508 -151174275 + L1Md_F LINE L1 355 2012 -3871 5 649 1157 75 0 0 chr3 8425508 8425655 -151174128 + B1_Mus2 SINE Alu 1 147 0 5 649 24065 125 10 25 chr3 8425655 8426868 -151172915 + L1Md_F LINE L1 2013 3176 -2707 5 649 183 42 0 0 chr3 8426868 8426892 -151172891 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 5 649 24065 125 10 25 chr3 8426892 8429119 -151170664 + L1Md_F LINE L1 3177 5411 -472 5 649 956 19 0 0 chr3 8429157 8429263 -151170520 + U6 snRNA snRNA 1 106 -1 5 649 25941 5 0 0 chr3 8429263 8432327 -151167456 + L1Md_A LINE L1 2523 5586 -297 5 649 9078 2 0 0 chr3 8432327 8433323 -151166460 + L1Md_A LINE L1 5587 6582 0 5 649 934 144 0 0 chr3 8433330 8433476 -151166307 + L1Md_F LINE L1 5484 5629 -254 5 649 23869 96 122 3 chr3 8433635 8438450 -151161333 + L1Md_F2 LINE L1 208 5586 -297 5 649 7486 64 11 12 chr3 8438450 8439444 -151160339 + L1Md_F2 LINE L1 5587 6579 -3 5 649 212 281 0 17 chr3 8439856 8439914 -151159869 + (TATATG)n Simple_repeat Simple_repeat 3 59 0 5 649 372 296 0 9 chr3 8440100 8440209 -151159574 - Arthur1 DNA Tip100 -2901 1046 939 5 649 237 325 50 0 chr3 8440209 8440221 -151159562 - ID SINE ID -139 85 2 5 649 252 309 15 0 chr3 8440221 8440289 -151159494 - ID4 SINE ID -13 70 2 5 649 304 304 130 0 chr3 8440551 8440643 -151159140 - PB1D10 SINE Alu -2 115 12 5 649 954 65 0 0 chr3 8440654 8440793 -151158990 + (TTTCC)n Simple_repeat Simple_repeat 3 141 0 5 649 211 327 0 18 chr3 8440847 8440903 -151158880 - B4A SINE B4 -147 145 91 5 649 1679 139 229 42 chr3 8441720 8442074 -151157709 - RLTR9B2 LTR ERVK 0 420 1 5 649 256 262 0 15 chr3 8442374 8442440 -151157343 + CT-rich Low_complexity Low_complexity 3 67 0 5 649 4595 62 5 0 chr3 8442509 8443093 -151156690 + LTRIS_Mus LTR ERV1 1 587 0 5 649 12165 88 25 26 chr3 8443395 8445241 -151154542 + Lx3_Mus LINE L1 2819 4663 -1223 5 649 38856 32 1 1 chr3 8445262 8452103 -151147680 - L1Md_T LINE L1 0 6585 1 5 649 8781 106 25 41 chr3 8452110 8453615 -151146168 + Lx3_Mus LINE L1 4660 6195 -814 5 649 544 105 0 13 chr3 8453615 8453692 -151146091 + RLTR20B1 LTR ERVK 91 166 -397 5 649 8781 106 25 41 chr3 8453692 8453958 -151145825 + Lx3_Mus LINE L1 6196 6468 -541 5 649 1701 177 49 29 chr3 8454173 8454267 -151145516 - RLTR20B2 LTR ERVK 0 560 454 5 649 402 21 0 0 chr3 8454267 8454314 -151145469 + (CA)n Simple_repeat Simple_repeat 2 48 0 5 649 957 34 0 0 chr3 8454314 8454430 -151145353 + (GA)n Simple_repeat Simple_repeat 2 118 0 5 649 1701 177 49 29 chr3 8454430 8454683 -151145100 - RLTR20B2 LTR ERVK -107 453 207 5 649 3544 102 28 64 chr3 8454687 8455293 -151144490 - RLTR6_Mm LTR ERV1 -70 584 1 5 649 1118 178 0 55 chr3 8455293 8455505 -151144278 - RLTR20B2 LTR ERVK -360 200 1 5 649 4507 161 45 21 chr3 8455505 8456387 -151143396 - MYSERV16_I-int LTR ERVK 0 2326 1424 5 649 250 59 78 0 chr3 8456392 8456443 -151143340 + (TTATA)n Simple_repeat Simple_repeat 5 59 0 5 649 315 172 9 75 chr3 8456445 8456552 -151143231 - MYSERV16_I-int LTR ERVK -809 1517 1418 5 649 332 367 21 7 chr3 8456678 8456818 -151142965 - B1F1 SINE Alu -7 142 1 5 649 443 353 100 20 chr3 8456920 8457360 -151142423 - Charlie24 DNA MER1_type -1784 666 192 5 649 424 48 32 0 chr3 8457734 8457797 -151141986 + (GGA)n Simple_repeat Simple_repeat 1 65 0 5 649 530 311 104 96 chr3 8457825 8458095 -151141688 - MTE2b LTR MaLR -12 367 96 5 649 486 0 0 0 chr3 8458545 8458599 -151141184 + (TC)n Simple_repeat Simple_repeat 1 54 0 5 649 896 202 11 16 chr3 8458599 8458785 -151140998 - Lx7 LINE L1 -805 6891 6707 5 649 729 273 35 42 chr3 8458787 8459070 -151140713 - Lx7 LINE L1 -1467 6229 5949 5 649 629 284 128 15 chr3 8459080 8459500 -151140283 - L1M3c LINE L1 -1895 4049 3637 5 649 229 244 60 49 chr3 8459612 8459696 -151140087 - MTEa LTR MaLR -9 370 287 5 649 385 180 92 69 chr3 8460021 8460152 -151139631 - L1M3c LINE L1 -3009 3195 3062 5 649 243 61 0 0 chr3 8460354 8460387 -151139396 + (CTG)n Simple_repeat Simple_repeat 3 35 0 5 649 263 273 73 0 chr3 8460470 8460580 -151139203 - L1M4c LINE L1 -5091 1293 1176 5 649 415 169 14 0 chr3 8460636 8460707 -151139076 - L1M3c LINE L1 -4716 1425 1354 5 649 273 282 175 20 chr3 8461070 8461316 -151138467 - Lx6 LINE L1 -1208 6265 5982 5 649 360 0 0 0 chr3 8461344 8461384 -151138399 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 5 649 1219 276 56 47 chr3 8463085 8463607 -151136176 - Lx6 LINE L1 -1560 5900 5371 5 649 2577 305 99 18 chr3 8463623 8464729 -151135054 + Lx8 LINE L1 6273 7468 -5 5 649 399 244 35 11 chr3 8464761 8464848 -151134935 + B4 SINE B4 8 96 -196 5 649 214 132 0 50 chr3 8465226 8465243 -151134540 + (ATGGTG)n Simple_repeat Simple_repeat 4 19 0 5 649 2521 79 154 0 chr3 8465243 8465599 -151134184 - IAPLTR2a LTR ERVK 0 411 1 5 649 214 132 0 50 chr3 8465599 8465621 -151134162 + (ATGGTG)n Simple_repeat Simple_repeat 6 27 0 5 649 343 261 66 83 chr3 8465644 8465765 -151134018 + B4 SINE B4 81 199 -93 5 649 789 166 0 0 chr3 8465945 8466090 -151133693 + (CA)n Simple_repeat Simple_repeat 2 146 0 5 649 376 241 83 9 chr3 8466091 8466200 -151133583 + HAL1-3A_ME LINE L1 1974 2090 -768 5 649 1343 157 9 35 chr3 8466477 8466708 -151133075 + URR1B DNA MER1_type 1 225 0 5 649 238 272 43 120 chr3 8467400 8467517 -151132266 - MLT1A0 LTR MaLR -256 109 2 5 649 563 308 89 55 chr3 8468432 8468779 -151131004 - ORR1E LTR MaLR 0 359 1 5 649 4510 113 30 8 chr3 8470392 8471033 -151128750 - Lx LINE L1 0 6654 6000 5 649 1451 132 4 0 chr3 8471040 8471267 -151128516 - L1_Mur2 LINE L1 -1569 4308 4081 5 649 2125 108 96 34 chr3 8471266 8471622 -151128161 - L1_Mm LINE L1 -583 5300 4923 5 649 1269 68 0 0 chr3 8471623 8471771 -151128012 + B1_Mus1 SINE Alu 1 148 0 5 649 3143 97 11 20 chr3 8471794 8472237 -151127546 + L1_Mus3 LINE L1 6200 6638 0 5 649 1390 72 97 0 chr3 8472243 8472450 -151127333 + MusHAL1 LINE L1 492 718 -1994 5 649 259 318 141 63 chr3 8472606 8472689 -151127094 + MTEb LTR MaLR 1 94 -280 5 649 880 216 67 5 chr3 8472689 8472898 -151126885 + URR1B DNA MER1_type 1 222 -3 5 649 290 304 70 46 chr3 8472898 8473132 -151126651 + MTEb LTR MaLR 95 351 -28 5 649 4909 211 78 70 chr3 8473157 8474081 -151125702 - Lx7 LINE L1 -17 7679 6820 5 649 192 77 0 0 chr3 8474081 8474107 -151125676 + (CTAGGG)n Simple_repeat Simple_repeat 3 28 0 5 649 4909 208 80 68 chr3 8474107 8474459 -151125324 - Lx7 LINE L1 -877 6819 6439 5 649 617 236 8 20 chr3 8474474 8474730 -151125053 + GA-rich Low_complexity Low_complexity 1 252 0 5 649 756 175 6 22 chr3 8474753 8474934 -151124849 + GA-rich Low_complexity Low_complexity 3 180 0 5 649 270 139 0 0 chr3 8474934 8474977 -151124806 + (GGGA)n Simple_repeat Simple_repeat 2 44 0 5 649 834 166 0 0 chr3 8474978 8475129 -151124654 + GA-rich Low_complexity Low_complexity 2 152 0 6 649 394 269 34 92 chr3 8475816 8475935 -151123848 + PB1D7 SINE Alu 1 112 -8 6 649 562 338 141 25 chr3 8476128 8476447 -151123336 - MLT1E1A LTR MaLR -31 649 294 6 649 323 306 123 12 chr3 8476610 8476772 -151123011 + Lx6 LINE L1 7250 7429 -31 6 649 38372 19 2 7 chr3 8476776 8481977 -151117806 + L1Md_A LINE L1 417 5586 -297 6 649 8981 34 0 0 chr3 8481977 8482973 -151116810 + L1Md_A LINE L1 5587 6582 0 6 649 343 218 144 77 chr3 8483219 8483287 -151116496 + L1_Rod LINE L1 4861 4937 -910 6 649 408 20 0 0 chr3 8483287 8483336 -151116447 + (CA)n Simple_repeat Simple_repeat 1 49 0 6 649 343 232 126 75 chr3 8483336 8483499 -151116284 + L1_Rod LINE L1 4938 5139 -741 6 649 263 316 13 21 chr3 8483902 8483998 -151115785 - L2b LINE L2 -15 3411 3284 6 649 391 298 0 9 chr3 8484918 8485033 -151114750 + Tigger5 DNA MER2_type 2293 2406 0 6 649 849 257 169 4 chr3 8485080 8485346 -151114437 - Lx7 LINE L1 -816 6880 6571 6 649 1678 249 96 5 chr3 8485353 8485800 -151113983 + Lx6 LINE L1 6947 7434 -26 6 649 450 302 25 8 chr3 8485969 8486089 -151113694 - B1F SINE Alu -21 128 7 6 649 193 330 104 28 chr3 8486144 8486250 -151113533 - MIRb SINE MIR -133 135 22 6 649 26 0 0 0 chr3 8487356 8487382 -151112401 + AT_rich Low_complexity Low_complexity 1 26 0 6 649 412 318 108 21 chr3 8487385 8487626 -151112157 - Lx8 LINE L1 -26 7447 7186 6 649 344 333 35 0 chr3 8487681 8487822 -151111961 - Lx8 LINE L1 -415 7058 6913 6 649 2193 27 0 48 chr3 8487838 8488110 -151111673 + L1Md_F3 LINE L1 6326 6584 0 6 649 417 177 0 0 chr3 8488157 8488236 -151111547 + (TA)n Simple_repeat Simple_repeat 1 79 0 6 649 253 330 22 11 chr3 8488812 8488904 -151110879 - B4A SINE B4 -152 140 48 6 649 219 88 0 0 chr3 8489259 8489293 -151110490 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 6 649 775 208 60 60 chr3 8489295 8489510 -151110273 + B3 SINE B2 1 215 -1 6 649 790 249 48 43 chr3 8489659 8489869 -151109914 - B3 SINE B2 -5 211 1 6 649 251 275 0 14 chr3 8490031 8490101 -151109682 - Lx9 LINE L1 -1739 5905 5837 6 649 496 132 0 0 chr3 8490311 8490387 -151109396 + URR1B DNA MER1_type 150 225 0 6 649 1619 189 48 6 chr3 8492496 8492826 -151106957 + Lx9 LINE L1 7134 7477 -167 6 649 426 268 75 55 chr3 8493035 8493154 -151106629 - B1F1 SINE Alu 0 149 22 6 649 3444 33 8 13 chr3 8493154 8493552 -151106231 + MTA_Mm LTR MaLR 1 396 0 6 649 426 268 75 55 chr3 8493552 8493578 -151106205 - B1F1 SINE Alu -128 21 1 6 649 243 254 16 0 chr3 8493616 8493679 -151106104 + PB1D10 SINE Alu 54 117 0 6 649 244 207 34 17 chr3 8493688 8493747 -151106036 + GA-rich Low_complexity Low_complexity 3 62 0 6 649 1234 203 107 0 chr3 8493753 8494014 -151105769 - MTD LTR MaLR -130 289 1 6 649 1423 222 76 110 chr3 8494014 8494447 -151105336 - MTD-int LTR MaLR 0 1258 851 6 649 324 70 0 0 chr3 8494447 8494490 -151105293 + (CA)n Simple_repeat Simple_repeat 2 44 0 6 649 1423 234 75 99 chr3 8494490 8494602 -151105181 - MTD-int LTR MaLR -408 850 643 6 649 257 256 127 13 chr3 8494592 8494671 -151105112 - MTEa LTR MaLR -270 109 22 6 649 1564 223 53 14 chr3 8494680 8495035 -151104748 + ORR1D1 LTR MaLR 4 372 -2 6 649 29 0 0 0 chr3 8495040 8495069 -151104714 + AT_rich Low_complexity Low_complexity 1 29 0 6 649 717 255 169 12 chr3 8495115 8495452 -151104331 + L1M3 LINE L1 4312 4701 -1439 6 649 284 171 77 26 chr3 8495566 8495644 -151104139 + MER2 DNA MER2_type 135 216 -129 6 649 2716 317 55 21 chr3 8495716 8496757 -151103026 - Lx8 LINE L1 -35 7438 6361 6 649 1364 222 53 77 chr3 8496757 8497132 -151102651 + ORR1D2 LTR MaLR 3 368 -2 6 649 2716 317 55 21 chr3 8497132 8497192 -151102591 - Lx8 LINE L1 -1113 6360 6299 6 649 1203 107 17 0 chr3 8497216 8497393 -151102390 - ORR1B1 LTR MaLR -213 181 2 6 649 2049 235 142 28 chr3 8497407 8497441 -151102342 - RCHARR1 DNA MER1_type -33 941 908 6 649 435 119 0 0 chr3 8497441 8497508 -151102275 + (TG)n Simple_repeat Simple_repeat 2 68 0 6 649 2049 235 142 28 chr3 8497508 8497656 -151102127 - RCHARR1 DNA MER1_type -67 907 764 6 649 213 39 0 0 chr3 8497656 8497682 -151102101 + (TG)n Simple_repeat Simple_repeat 1 26 0 6 649 2049 235 142 28 chr3 8497682 8498212 -151101571 - RCHARR1 DNA MER1_type -211 763 150 6 649 1427 215 13 20 chr3 8498219 8498523 -151101260 - MTD-int LTR MaLR -804 454 153 6 649 183 275 55 55 chr3 8498567 8498640 -151101143 + L4 LINE RTE 1141 1213 -816 6 649 547 280 0 0 chr3 8498761 8498879 -151100904 - ORR1E LTR MaLR -233 126 9 6 649 349 247 176 39 chr3 8498895 8499197 -151100586 + L1M2 LINE L1 5347 5688 -612 6 649 22 56 0 0 chr3 8499467 8499503 -151100280 + AT_rich Low_complexity Low_complexity 1 36 0 6 649 463 259 76 0 chr3 8499653 8499784 -151099999 + B1F1 SINE Alu 1 141 -8 6 649 21 57 0 0 chr3 8499913 8499948 -151099835 + AT_rich Low_complexity Low_complexity 1 35 0 6 649 1006 21 35 0 chr3 8500003 8500144 -151099639 + (TC)n Simple_repeat Simple_repeat 2 147 0 1 649 258 189 57 0 chr3 8500150 8500203 -151099580 - L1MA4 LINE L1 -371 5929 5874 2 649 259 98 0 0 chr3 8500441 8500482 -151099301 + BC1_Mm scRNA scRNA 1 41 -111 3 649 362 391 19 38 chr3 8501007 8501217 -151098566 - LTR16A LTR ERVL -8 443 238 4 649 6512 99 37 38 chr3 8501400 8502255 -151097528 + L1_Mur2 LINE L1 1037 1869 -4008 5 649 217 0 0 57 chr3 8502255 8502290 -151097493 + (TA)n Simple_repeat Simple_repeat 2 34 0 6 649 6512 93 25 45 chr3 8502290 8502713 -151097070 + L1_Mur2 LINE L1 1870 2288 -3589 5 649 7036 147 77 6 chr3 8502714 8503940 -151095843 + Lx4B LINE L1 5657 6941 -117 7 649 507 17 0 0 chr3 8504982 8505042 -151094741 + (TG)n Simple_repeat Simple_repeat 2 61 0 8 649 270 295 66 0 chr3 8505043 8505104 -151094679 - ID4 SINE ID -11 72 8 9 649 548 314 139 10 chr3 8505534 8505945 -151093838 + Lx8 LINE L1 7004 7467 -6 1 649 23 0 0 0 chr3 8508272 8508295 -151091488 + AT_rich Low_complexity Low_complexity 1 23 0 1 649 198 103 0 0 chr3 8508651 8508680 -151091103 + (TGAA)n Simple_repeat Simple_repeat 1 29 0 1 649 423 0 0 0 chr3 8511027 8511074 -151088709 + (CA)n Simple_repeat Simple_repeat 1 47 0 1 649 450 0 0 0 chr3 8512254 8512304 -151087479 + (CATA)n Simple_repeat Simple_repeat 4 53 0 1 649 30 0 0 0 chr3 8513928 8513958 -151085825 + AT_rich Low_complexity Low_complexity 1 30 0 1 649 420 70 0 0 chr3 8515269 8515326 -151084457 + L1_Mus2 LINE L1 6509 6565 -1 1 649 409 303 0 10 chr3 8515649 8515749 -151084034 + PB1D10 SINE Alu 9 107 -10 1 649 1043 156 96 43 chr3 8516140 8516348 -151083435 - URR1A DNA MER1_type -2 224 6 1 649 309 118 0 0 chr3 8516395 8516446 -151083337 + (TTG)n Simple_repeat Simple_repeat 2 52 0 1 649 492 32 0 0 chr3 8518024 8518086 -151081697 + (TTTTG)n Simple_repeat Simple_repeat 2 63 0 2 649 977 189 54 5 chr3 8518091 8518277 -151081506 + B3 SINE B2 11 205 -11 2 649 7897 39 26 27 chr3 8518364 8519361 -151080422 - L1Md_F2 LINE L1 0 6582 5587 2 649 3773 57 6 0 chr3 8519371 8519572 -151080211 + L1_Mm LINE L1 5089 5292 -591 2 81 1800 34 0 0 chr3 8519572 8519776 -151080007 + L1Md_F3 LINE L1 6366 6569 -15 2 650 3773 57 6 0 chr3 8519776 8520049 -151079734 + L1_Mm LINE L1 5293 5565 -318 2 650 249 57 0 0 chr3 8520847 8520882 -151078901 + (TCTG)n Simple_repeat Simple_repeat 2 36 0 2 650 248 99 27 27 chr3 8520944 8521017 -151078766 + (TG)n Simple_repeat Simple_repeat 2 74 0 2 650 271 259 183 12 chr3 8521021 8521103 -151078680 - B1_Mus2 SINE Alu -51 96 1 2 650 378 0 0 0 chr3 8522479 8522521 -151077262 + (CA)n Simple_repeat Simple_repeat 2 43 0 2 650 1689 32 21 0 chr3 8522525 8522714 -151077069 - B2_Mm1t SINE B2 0 193 1 2 650 213 286 0 0 chr3 8523420 8523476 -151076307 + (CA)n Simple_repeat Simple_repeat 1 56 0 3 650 1711 186 73 53 chr3 8524503 8524900 -151074883 - MTD LTR MaLR -14 405 1 3 650 232 291 66 72 chr3 8527213 8527365 -151072418 - L1MA9 LINE L1 -60 6252 6102 3 650 598 220 113 8 chr3 8528061 8528194 -151071589 - B1_Mur1 SINE Alu 0 149 3 3 650 213 65 0 0 chr3 8528312 8528343 -151071440 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 3 650 532 279 20 82 chr3 8529540 8529735 -151070048 - B4A SINE B4 -5 287 105 3 650 497 338 19 19 chr3 8529850 8530061 -151069722 + ID_B1 SINE B4 1 211 -13 3 650 29 47 0 0 chr3 8530064 8530107 -151069676 + AT_rich Low_complexity Low_complexity 1 43 0 3 650 807 159 76 0 chr3 8530442 8530574 -151069209 + B1_Mur1 SINE Alu 3 144 -5 3 650 2498 160 116 29 chr3 8531424 8531907 -151067876 - RLTR11A2 LTR ERVK 0 527 3 3 650 434 159 18 18 chr3 8531969 8532078 -151067705 + (TA)n Simple_repeat Simple_repeat 2 110 0 4 650 21 0 0 0 chr3 8532171 8532192 -151067591 + AT_rich Low_complexity Low_complexity 1 21 0 4 650 454 331 8 0 chr3 8533264 8533385 -151066398 + MER2B DNA MER2_type 213 334 -2 4 650 259 246 66 0 chr3 8533544 8533605 -151066178 + ID4_ SINE ID 8 72 -11 4 650 276 30 0 0 chr3 8533608 8533641 -151066142 + (TG)n Simple_repeat Simple_repeat 1 33 0 4 650 363 23 0 0 chr3 8533641 8533684 -151066099 + (GA)n Simple_repeat Simple_repeat 1 44 0 4 650 370 369 107 53 chr3 8534686 8534892 -151064891 + B4A SINE B4 5 221 -71 4 650 536 77 0 13 chr3 8534979 8535058 -151064725 + (GGGA)n Simple_repeat Simple_repeat 4 81 0 4 650 225 0 0 0 chr3 8535246 8535271 -151064512 + (T)n Simple_repeat Simple_repeat 1 25 0 4 650 15393 17 0 0 chr3 8535305 8537765 -151062018 - L1Md_T LINE L1 -1 6581 4122 4 650 575 214 216 70 chr3 8537783 8537954 -151061829 + B3A SINE B2 2 197 -1 5 650 366 266 11 0 chr3 8538392 8538486 -151061297 - B1F SINE Alu -54 95 1 5 650 189 0 0 0 chr3 8539032 8539053 -151060730 + (TA)n Simple_repeat Simple_repeat 2 22 0 5 650 486 0 0 0 chr3 8539053 8539106 -151060677 + (TG)n Simple_repeat Simple_repeat 1 54 0 5 650 721 304 111 38 chr3 8539472 8539674 -151060109 - MER2 DNA MER2_type 0 345 127 5 650 438 20 0 0 chr3 8539674 8539725 -151060058 + (TA)n Simple_repeat Simple_repeat 1 51 0 5 650 225 0 0 0 chr3 8539725 8539749 -151060034 + (GA)n Simple_repeat Simple_repeat 2 26 0 5 650 721 304 111 38 chr3 8539749 8539860 -151059923 - MER2 DNA MER2_type -219 126 9 5 650 642 269 87 6 chr3 8540527 8540699 -151059084 + RMER30 DNA MER1_type 12 197 -5 5 650 649 173 21 41 chr3 8541417 8541562 -151058221 - B1_Mus1 SINE Alu -2 146 5 5 650 299 317 0 12 chr3 8542452 8542535 -151057248 + ID_B1 SINE B4 80 161 -63 5 650 344 271 39 13 chr3 8542461 8542549 -151057234 + PB1D7 SINE Alu 8 97 -52 6 650 799 200 14 7 chr3 8542646 8542792 -151056991 - B1_Mm SINE Alu 0 147 1 6 650 202 323 117 56 chr3 8543460 8543657 -151056126 - L2b LINE L2 -49 3326 3118 6 650 26 30 0 0 chr3 8544113 8544146 -151055637 + AT_rich Low_complexity Low_complexity 1 33 0 6 650 459 219 72 7 chr3 8544291 8544429 -151055354 - L1MA8 LINE L1 0 6291 6145 6 650 259 248 151 17 chr3 8544473 8544592 -151055191 + L1MA4A LINE L1 5793 5927 -373 6 650 468 35 0 0 chr3 8544594 8544652 -151055131 + (TA)n Simple_repeat Simple_repeat 1 58 0 6 650 1606 233 56 5 chr3 8544883 8545276 -151054507 + MTD LTR MaLR 5 417 -2 6 650 324 244 271 10 chr3 8545278 8545468 -151054315 - L1MA8 LINE L1 -228 6063 5824 6 650 437 163 11 0 chr3 8545803 8545895 -151053888 + (GTTTG)n Simple_repeat Simple_repeat 2 94 0 6 650 560 167 17 61 chr3 8545896 8546011 -151053772 - B1_Mur3 SINE Alu 0 149 40 6 650 279 54 0 0 chr3 8546034 8546071 -151053712 + (CA)n Simple_repeat Simple_repeat 1 37 0 7 650 21 36 0 0 chr3 8546399 8546427 -151053356 + AT_rich Low_complexity Low_complexity 1 28 0 7 650 34 65 0 0 chr3 8546629 8546691 -151053092 + AT_rich Low_complexity Low_complexity 1 62 0 7 650 360 0 0 0 chr3 8546985 8547025 -151052758 + (CA)n Simple_repeat Simple_repeat 1 40 0 7 650 491 0 17 0 chr3 8547025 8547083 -151052700 + (GA)n Simple_repeat Simple_repeat 2 61 0 7 650 342 261 52 7 chr3 8548563 8548698 -151051085 - L2a LINE L2 -317 3109 2961 7 650 315 113 0 0 chr3 8548773 8548826 -151050957 + (A)n Simple_repeat Simple_repeat 1 53 0 7 650 866 148 0 34 chr3 8548911 8549058 -151050725 + B1_Mur4 SINE Alu 6 147 -3 7 650 23 33 0 0 chr3 8549333 8549363 -151050420 + AT_rich Low_complexity Low_complexity 1 30 0 7 650 208 216 39 0 chr3 8550326 8550377 -151049406 + MIRc SINE MIR 64 116 -152 7 650 711 235 35 12 chr3 8550384 8550556 -151049227 - MTD LTR MaLR -204 215 40 8 650 442 319 91 21 chr3 8551322 8551565 -151048218 - RMER5 LTR ERV1 0 534 275 8 650 300 243 103 37 chr3 8551590 8551697 -151048086 - RMER5 LTR ERV1 -381 153 40 8 650 522 0 0 0 chr3 8553595 8553653 -151046130 + (GA)n Simple_repeat Simple_repeat 2 59 0 8 650 233 222 0 53 chr3 8553662 8553719 -151046064 + B4A SINE B4 87 140 -152 8 650 901 249 15 0 chr3 8554071 8554276 -151045507 - B3 SINE B2 -8 208 1 8 650 35 78 0 0 chr3 8555286 8555363 -151044420 + AT_rich Low_complexity Low_complexity 1 77 0 8 650 345 242 61 25 chr3 8555733 8555846 -151043937 - PB1D10 SINE Alu -8 119 1 8 650 229 259 35 69 chr3 8555770 8555857 -151043926 - MT2B2 LTR ERVL -348 236 153 8 650 284 371 92 5 chr3 8556852 8557058 -151042725 - MIRb SINE MIR -17 251 28 8 650 823 55 0 0 chr3 8558487 8558597 -151041186 + L1_Mus1 LINE L1 6458 6567 0 8 650 424 274 47 1 chr3 8558753 8558889 -151040894 + MIR SINE MIR 64 197 -65 9 650 360 0 0 0 chr3 8559921 8559961 -151039822 + (TTG)n Simple_repeat Simple_repeat 2 41 0 9 650 216 182 0 0 chr3 8560441 8560485 -151039298 + A-rich Low_complexity Low_complexity 2 45 0 9 650 450 227 70 35 chr3 8562199 8562313 -151037470 - B1_Mur1 SINE Alu -11 138 21 9 650 243 61 0 0 chr3 8562384 8562417 -151037366 + (TTA)n Simple_repeat Simple_repeat 2 34 0 9 650 508 236 128 32 chr3 8562420 8562608 -151037175 - B3 SINE B2 -9 207 2 9 650 459 0 0 0 chr3 8562850 8562901 -151036882 + (GAAAA)n Simple_repeat Simple_repeat 2 52 0 9 650 768 77 0 0 chr3 8562901 8563005 -151036778 + (GGGGA)n Simple_repeat Simple_repeat 4 107 0 9 650 237 196 21 42 chr3 8564082 8564178 -151035605 + GA-rich Low_complexity Low_complexity 4 97 0 9 650 700 248 197 21 chr3 8565336 8565649 -151034134 + MTEa LTR MaLR 14 359 0 9 650 534 212 208 62 chr3 8565958 8566199 -151033584 - B4A SINE B4 -16 276 1 1 650 247 417 21 0 chr3 8566201 8566345 -151033438 - MLT1J-int LTR MaLR -456 931 785 1 650 212 167 0 0 chr3 8566348 8566390 -151033393 + T-rich Low_complexity Low_complexity 2 43 0 1 650 1242 41 0 0 chr3 8566396 8566542 -151033241 - B1_Mus2 SINE Alu 0 147 2 1 650 735 232 109 19 chr3 8567537 8567748 -151032035 - RLTR18 LTR ERVK -3 613 384 1 650 303 118 0 0 chr3 8567757 8567808 -151031975 + B1_Mur4 SINE Alu 100 150 0 1 650 23 33 0 0 chr3 8567815 8567845 -151031938 + AT_rich Low_complexity Low_complexity 1 30 0 1 650 578 302 53 36 chr3 8567965 8568322 -151031461 + L1_Rod LINE L1 2276 2638 -3209 1 650 596 227 50 0 chr3 8568343 8568462 -151031321 + ID_B1 SINE B4 95 219 -5 1 650 401 285 77 27 chr3 8568469 8568689 -151031094 + L1M2 LINE L1 2640 2870 -3273 1 650 5535 134 47 11 chr3 8569492 8571085 -151028698 + L1Md_F LINE L1 520 2109 -1803 1 650 7763 70 20 4 chr3 8571082 8572394 -151027389 + L1_Mus2 LINE L1 5239 6566 0 1 650 4542 119 9 75 chr3 8572643 8573509 -151026274 + RMER17D2 LTR ERVK 1 809 0 1 650 709 189 118 12 chr3 8573909 8574070 -151025713 - B3 SINE B2 0 216 39 1 650 2436 89 181 5 chr3 8574072 8574476 -151025307 - IAPLTR2_Mm LTR ERVK 0 475 1 1 650 6130 45 4 19 chr3 8574478 8575233 -151024550 - IAPEz-int LTR ERVK -2 6479 5736 1 650 2279 61 0 0 chr3 8575232 8575510 -151024273 - IAPEz-int LTR ERVK -4845 1636 1359 1 650 3660 75 20 39 chr3 8575511 8576162 -151023621 - IAPEz-int LTR ERVK -5821 660 168 1 650 236 244 0 0 chr3 8576162 8576207 -151023576 - RLTR27 LTR ERVK -34 275 231 1 650 1198 92 10 84 chr3 8576215 8576417 -151023366 - IAPEz-int LTR ERVK -6286 195 9 1 650 2423 92 181 5 chr3 8576418 8576822 -151022961 - IAPLTR2_Mm LTR ERVK 0 475 1 1 650 448 330 131 59 chr3 8577351 8577824 -151021959 + MTE-int LTR MaLR 661 1167 -413 1 650 333 245 106 26 chr3 8577924 8578037 -151021746 - MLT1A1 LTR MaLR 0 408 287 1 650 453 309 157 30 chr3 8578496 8579140 -151020643 + L2 LINE L2 1862 2587 -832 1 650 275 367 58 12 chr3 8579282 8579453 -151020330 + MIR SINE MIR 14 192 -70 1 650 741 282 69 73 chr3 8579453 8579697 -151020086 + ID_B1 SINE B4 1 246 -46 1 650 478 205 24 0 chr3 8579697 8579824 -151019959 + GA-rich Low_complexity Low_complexity 3 132 0 1 650 432 0 0 0 chr3 8579993 8580041 -151019742 + (TG)n Simple_repeat Simple_repeat 1 48 0 1 650 606 118 0 0 chr3 8580152 8580245 -151019538 + (GA)n Simple_repeat Simple_repeat 2 94 0 1 650 2538 240 74 50 chr3 8580738 8581497 -151018286 - Lx5 LINE L1 -31 7019 6243 1 650 5049 61 6 6 chr3 8581517 8582163 -151017620 - L1Md_F2 LINE L1 -6 6576 5931 1 650 2859 17 3 0 chr3 8582163 8582518 -151017265 + MTA_Mm LTR MaLR 41 396 0 1 650 9376 29 3 2 chr3 8582518 8583615 -151016168 + MTA_Mm-int LTR MaLR 1 1098 0 1 650 3516 20 2 0 chr3 8583615 8584010 -151015773 + MTA_Mm LTR MaLR 1 396 0 1 650 34772 63 6 16 chr3 8584010 8585438 -151014345 - L1Md_F2 LINE L1 -647 5935 4538 1 650 1009 252 71 71 chr3 8585438 8585831 -151013952 + RLTR9C LTR ERVK 1 393 0 1 650 34772 99 21 35 chr3 8585831 8590177 -151009606 - L1Md_F2 LINE L1 -1346 4537 238 1 650 837 312 104 17 chr3 8590809 8591272 -151008511 - Lx8 LINE L1 -5 7468 6966 1 650 360 0 0 0 chr3 8591300 8591340 -151008443 + (CA)n Simple_repeat Simple_repeat 2 41 0 1 650 1581 276 82 21 chr3 8591340 8591376 -151008407 + Lx8 LINE L1 6138 6174 -1522 1 650 186 43 0 0 chr3 8591376 8591399 -151008384 + (GA)n Simple_repeat Simple_repeat 2 24 0 1 650 1581 294 76 40 chr3 8591399 8592162 -151007621 + Lx8 LINE L1 6172 6949 -524 1 650 1865 176 68 8 chr3 8592183 8592550 -151007233 + ORR1B1 LTR MaLR 1 389 -5 1 650 423 0 0 0 chr3 8592550 8592597 -151007186 + (TG)n Simple_repeat Simple_repeat 1 47 0 1 650 471 155 0 0 chr3 8592691 8592775 -151007008 + (ATTG)n Simple_repeat Simple_repeat 4 87 0 1 650 252 241 138 36 chr3 8592775 8592913 -151006870 + Lx8 LINE L1 7540 7691 -5 1 650 223 351 0 25 chr3 8593196 8593275 -151006508 - PB1 SINE Alu -16 111 35 1 650 375 309 97 8 chr3 8593375 8593499 -151006284 + ID_B1 SINE B4 84 218 -6 1 650 22 35 0 0 chr3 8593501 8593530 -151006253 + AT_rich Low_complexity Low_complexity 1 29 0 1 650 218 32 0 31 chr3 8594980 8595012 -151004771 + (TATAA)n Simple_repeat Simple_repeat 5 35 0 1 650 189 0 0 0 chr3 8595350 8595371 -151004412 + (T)n Simple_repeat Simple_repeat 1 21 0 1 650 271 248 54 54 chr3 8595904 8596015 -151003768 + PB1D10 SINE Alu 2 112 -5 1 650 307 304 139 0 chr3 8596283 8596398 -151003385 - MT2A LTR ERVL -112 421 291 1 650 253 337 20 0 chr3 8596543 8596641 -151003142 - MTEa LTR MaLR -274 105 6 1 650 303 93 0 0 chr3 8596657 8596700 -151003083 + (CA)n Simple_repeat Simple_repeat 1 43 0 1 650 198 0 0 0 chr3 8596700 8596721 -151003062 + (CG)n Simple_repeat Simple_repeat 1 22 0 1 650 418 274 79 24 chr3 8596857 8596984 -151002799 + RSINE1 SINE B4 3 136 -29 1 650 384 77 0 0 chr3 8597214 8597266 -151002517 + (GGGA)n Simple_repeat Simple_repeat 2 53 0 1 650 1236 96 0 0 chr3 8597268 8597445 -151002338 + (GGAA)n Simple_repeat Simple_repeat 4 180 0 1 650 308 276 91 126 chr3 8598086 8598372 -151001411 - B4 SINE B4 -15 277 2 1 650 516 156 0 0 chr3 8598374 8598464 -151001319 + CT-rich Low_complexity Low_complexity 2 91 0 1 650 297 274 0 0 chr3 8599476 8599549 -151000234 + Lx8 LINE L1 5841 5913 -1560 1 650 234 347 23 61 chr3 8600184 8600316 -150999467 - MLT1A1 LTR MaLR -8 357 231 1 650 246 264 47 67 chr3 8600354 8600504 -150999279 - MLT1A1 LTR MaLR -261 147 1 1 650 613 260 118 6 chr3 8600747 8600917 -150998866 + B4A SINE B4 83 271 -21 1 650 429 20 0 0 chr3 8601109 8601159 -150998624 + (TA)n Simple_repeat Simple_repeat 2 51 0 1 650 405 0 0 0 chr3 8602040 8602085 -150997698 + (TG)n Simple_repeat Simple_repeat 1 45 0 1 650 721 271 80 73 chr3 8602133 8602420 -150997363 - B4A SINE B4 0 292 4 1 650 396 0 0 0 chr3 8604373 8604417 -150995366 + (GA)n Simple_repeat Simple_repeat 1 44 0 1 650 844 186 87 29 chr3 8604424 8604596 -150995187 + Lx9 LINE L1 6372 6553 -1091 1 650 185 0 0 39 chr3 8604647 8604673 -150995110 + (TTTA)n Simple_repeat Simple_repeat 4 28 0 1 650 755 207 15 39 chr3 8604674 8604880 -150994903 - Lx5 LINE L1 -11 7039 6839 1 650 630 320 71 92 chr3 8604899 8605378 -150994405 - RLTR26 LTR ERVK -3 639 171 1 650 2663 215 105 53 chr3 8605493 8606245 -150993538 + Lx9 LINE L1 6617 7407 -237 1 650 297 0 0 0 chr3 8606261 8606294 -150993489 + (TG)n Simple_repeat Simple_repeat 1 33 0 1 650 368 174 71 35 chr3 8606314 8606427 -150993356 + Lx9 LINE L1 7519 7635 -9 1 650 504 196 19 10 chr3 8606756 8606859 -150992924 - PB1D10 SINE Alu 0 117 14 1 650 1255 35 0 0 chr3 8608253 8608398 -150991385 + B1_Mus2 SINE Alu 2 146 -1 1 650 352 253 21 21 chr3 8608910 8609003 -150990780 + ID_B1 SINE B4 102 194 -30 1 650 248 294 58 19 chr3 8609003 8609014 -150990769 + B1F SINE Alu 21 128 -21 1 650 425 77 31 0 chr3 8609033 8609098 -150990685 + (CAGA)n Simple_repeat Simple_repeat 2 68 0 1 650 472 257 89 57 chr3 8609680 8609837 -150989946 + RSINE1 SINE B4 3 164 -1 1 650 210 297 125 0 chr3 8610035 8610099 -150989684 + B4A SINE B4 1 72 -220 1 650 286 273 104 22 chr3 8610985 8611120 -150988663 + ID_B1 SINE B4 70 215 -9 1 650 330 208 60 94 chr3 8611009 8611126 -150988657 + B1F2 SINE Alu 13 140 -9 1 650 271 292 14 0 chr3 8611136 8611208 -150988575 + ID4_ SINE ID 2 74 -9 1 650 336 341 65 6 chr3 8611644 8611812 -150987971 - MLT1G1 LTR MaLR -401 178 1 1 650 769 206 7 0 chr3 8612157 8612298 -150987485 - B1_Mur1 SINE Alu -6 143 2 1 650 1449 181 114 42 chr3 8612354 8612712 -150987071 + ORR1C2 LTR MaLR 1 384 0 1 650 28 0 0 0 chr3 8613111 8613139 -150986644 + AT_rich Low_complexity Low_complexity 1 28 0 1 650 189 74 0 0 chr3 8613159 8613186 -150986597 + (CAGAGA)n Simple_repeat Simple_repeat 4 30 0 1 650 342 197 12 50 chr3 8613290 8613370 -150986413 - MLT1A1 LTR MaLR -12 396 320 1 650 221 271 83 28 chr3 8613589 8613661 -150986122 - MER5B DNA MER1_type -35 143 68 1 650 1915 229 106 61 chr3 8613697 8614370 -150985413 - Lx9 LINE L1 -1 7643 6941 1 650 1134 122 24 92 chr3 8614434 8614474 -150985309 + B2_Mm2 SINE B2 1 40 -155 1 650 1045 60 45 0 chr3 8614474 8614607 -150985176 + B1_Mus1 SINE Alu 5 143 -5 1 650 185 0 40 0 chr3 8614609 8614634 -150985149 + (CAA)n Simple_repeat Simple_repeat 2 27 0 1 650 1134 122 24 92 chr3 8614634 8614797 -150984986 + B2_Mm2 SINE B2 41 193 -2 1 650 1325 85 17 0 chr3 8615540 8615717 -150984066 - B2_Mm2 SINE B2 -14 181 2 1 650 247 221 62 38 chr3 8616075 8616155 -150983628 - MER72B LTR ERV1 -261 507 426 1 650 324 70 0 0 chr3 8616895 8616938 -150982845 + (TA)n Simple_repeat Simple_repeat 2 44 0 1 650 598 243 64 12 chr3 8616939 8617110 -150982673 - B3A SINE B2 -16 182 3 1 650 1905 172 116 5 chr3 8617400 8617779 -150982004 - MTC LTR MaLR 0 421 1 1 650 243 294 65 11 chr3 8617938 8618031 -150981752 - ORR1D2 LTR MaLR -7 363 266 1 650 514 206 43 0 chr3 8618577 8618669 -150981114 - PB1D10 SINE Alu -8 109 14 1 650 261 268 79 40 chr3 8618587 8618688 -150981095 - B4A SINE B4 -105 187 83 1 650 433 191 82 0 chr3 8618853 8618962 -150980821 + PB1D10 SINE Alu 1 119 -30 1 650 192 40 0 0 chr3 8619659 8619684 -150980099 + (A)n Simple_repeat Simple_repeat 1 25 0 1 650 1314 184 202 30 chr3 8619684 8620015 -150979768 + MTD LTR MaLR 30 417 -2 1 650 3928 138 48 3 chr3 8620102 8620744 -150979039 - L1_Mm LINE L1 -246 5637 4967 1 650 834 197 8 0 chr3 8621109 8621241 -150978542 - ETnERV2-int LTR ERVK -204 7202 7070 1 650 4520 145 45 11 chr3 8621242 8622022 -150977761 - L1_Mur2 LINE L1 -897 4980 4175 1 650 6256 113 82 9 chr3 8622019 8622972 -150976811 + Lx LINE L1 5629 6650 -4 1 650 589 261 13 32 chr3 8624665 8624823 -150974960 + RSINE1 SINE B4 4 158 -7 1 650 550 238 184 0 chr3 8625063 8625231 -150974552 - ID_B1 SINE B4 -2 222 24 1 650 256 196 96 48 chr3 8626290 8626478 -150973305 + RMER17C LTR ERVK 81 277 -133 2 650 357 24 0 0 chr3 8626850 8626892 -150972891 + (GAAA)n Simple_repeat Simple_repeat 3 44 0 2 650 543 132 48 4 chr3 8627419 8627653 -150972130 + (TAGA)n Simple_repeat Simple_repeat 1 244 0 2 650 380 262 26 53 chr3 8627848 8627961 -150971822 + MIRb SINE MIR 70 179 -89 2 650 865 267 91 11 chr3 8629307 8629572 -150970211 + B4A SINE B4 1 286 -6 2 650 231 114 0 0 chr3 8629939 8629974 -150969809 + (CCCCCG)n Simple_repeat Simple_repeat 2 36 0 2 650 545 190 20 20 chr3 8630652 8630754 -150969029 + MTEa LTR MaLR 64 165 -214 2 650 503 243 131 17 chr3 8630830 8631006 -150968777 + MTEa LTR MaLR 170 365 -14 2 650 3076 34 0 3 chr3 8632153 8632508 -150967275 + IAPEY2_LTR LTR ERVK 1 354 -3 2 650 431 273 83 0 chr3 8632839 8632971 -150966812 - B1_Mur1 SINE Alu -6 143 1 2 650 366 156 0 0 chr3 8633743 8633807 -150965976 + GA-rich Low_complexity Low_complexity 2 65 0 2 650 310 299 0 0 chr3 8634777 8634854 -150964929 - ID4 SINE ID -4 79 3 2 650 423 329 28 7 chr3 8634863 8635004 -150964779 - B1F SINE Alu -1 148 5 2 650 351 220 104 52 chr3 8635867 8635982 -150963801 - MLT1A0 LTR MaLR -232 133 13 2 650 280 301 128 11 chr3 8636229 8636323 -150963460 + RSINE1 SINE B4 16 120 -45 2 650 240 184 0 0 chr3 8636331 8636380 -150963403 + CT-rich Low_complexity Low_complexity 1 49 0 2 650 617 193 124 39 chr3 8636458 8636636 -150963147 + B3A SINE B2 1 193 -5 2 650 294 304 32 11 chr3 8636866 8636959 -150962824 - MLT2B2 LTR ERVL -318 197 103 2 650 369 282 0 0 chr3 8637013 8637098 -150962685 + ORR1E LTR MaLR 11 95 -264 2 650 289 284 171 18 chr3 8637331 8637442 -150962341 + ORR1E LTR MaLR 249 376 -3 2 650 22 0 0 0 chr3 8637746 8637768 -150962015 + AT_rich Low_complexity Low_complexity 1 22 0 2 650 557 338 18 18 chr3 8637892 8638118 -150961665 + Tigger14a DNA MER2_type 69 294 -30 2 650 201 145 32 16 chr3 8638499 8638562 -150961221 + (TA)n Simple_repeat Simple_repeat 2 65 0 2 650 23 0 0 0 chr3 8638600 8638623 -150961160 + AT_rich Low_complexity Low_complexity 1 23 0 2 650 464 176 10 0 chr3 8638629 8638731 -150961052 + (TA)n Simple_repeat Simple_repeat 2 104 0 2 650 411 92 272 52 chr3 8638893 8639003 -150960780 + B1_Mus1 SINE Alu 6 148 -1 2 650 316 308 0 0 chr3 8639035 8639113 -150960670 - MER3 DNA MER1_type -70 139 62 2 650 643 24 24 0 chr3 8639796 8639881 -150959902 + (GAA)n Simple_repeat Simple_repeat 1 87 0 2 650 1411 79 26 0 chr3 8641085 8641275 -150958508 + B2_Mm2 SINE B2 1 195 0 2 650 758 313 14 46 chr3 8641498 8641779 -150958004 - B4A SINE B4 -12 280 9 2 650 311 328 116 16 chr3 8642081 8642270 -150957513 - LTR88b LTR Gypsy? -488 349 142 2 650 225 0 0 0 chr3 8643218 8643243 -150956540 + (TTTTG)n Simple_repeat Simple_repeat 4 28 0 2 650 559 152 26 126 chr3 8643742 8643893 -150955890 - RCHARR1 DNA MER1_type -90 884 749 2 650 285 333 146 66 chr3 8643927 8644078 -150955705 - RSINE1 SINE B4 0 165 3 2 650 856 289 5 0 chr3 8644078 8644281 -150955502 - RCHARR1 DNA MER1_type -217 757 554 2 650 346 294 78 35 chr3 8644295 8644313 -150955470 - B1F SINE Alu -1 148 3 2 650 456 287 41 0 chr3 8644313 8644435 -150955348 - ID_B1 SINE B4 -14 210 84 2 650 318 245 20 10 chr3 8644437 8644536 -150955247 - RCHARR1 DNA MER1_type -408 566 467 2 650 406 274 49 56 chr3 8644515 8644530 -150955253 - B1_Mus1 SINE Alu -6 142 1 2 650 519 250 109 0 chr3 8644530 8644658 -150955125 - ID_B1 SINE B4 -1 223 82 2 650 828 290 89 7 chr3 8644657 8644938 -150954845 - RCHARR1 DNA MER1_type -492 482 179 2 650 312 323 52 0 chr3 8644989 8645085 -150954698 + RSINE1 SINE B4 44 144 -21 2 650 310 186 23 0 chr3 8645104 8645190 -150954593 + C-rich Low_complexity Low_complexity 6 93 0 2 650 185 288 44 29 chr3 8645313 8645381 -150954402 + L2b LINE L2 3303 3371 -4 2 650 723 271 19 38 chr3 8646320 8646531 -150953252 + ID_B1 SINE B4 2 208 -16 2 650 277 165 10 240 chr3 8646541 8646596 -150953187 + B3A SINE B2 1 46 -152 2 650 820 146 88 0 chr3 8646596 8646733 -150953050 - B1_Mur4 SINE Alu 0 150 2 2 650 277 165 10 240 chr3 8646733 8646781 -150953002 + B3A SINE B2 47 80 -118 2 650 544 318 15 39 chr3 8646737 8646940 -150952843 + B4A SINE B4 36 233 -59 2 650 271 224 39 26 chr3 8647191 8647230 -150952553 - ORR1A1 LTR MaLR 0 346 307 2 650 1794 256 24 126 chr3 8647230 8647819 -150951964 - RMER19C LTR ERVK 0 611 83 2 650 598 55 4 5 chr3 8647998 8648084 -150951699 - RMER19C LTR ERVK -652 85 1 2 650 1778 139 22 6 chr3 8648084 8648397 -150951386 - ORR1B1 LTR MaLR -33 361 2 2 650 186 333 72 43 chr3 8648495 8648633 -150951150 - MER5A DNA MER1_type -47 142 1 2 650 624 293 87 25 chr3 8648737 8648933 -150950850 - B3 SINE B2 0 216 9 2 650 278 87 22 0 chr3 8649514 8649560 -150950223 + (CCCCCG)n Simple_repeat Simple_repeat 2 48 0 2 650 243 0 0 0 chr3 8649941 8649968 -150949815 + (A)n Simple_repeat Simple_repeat 1 27 0 2 651 426 308 81 25 chr3 8651076 8651236 -150948547 - MER5B DNA MER1_type -9 169 1 2 651 3367 18 39 0 chr3 8651897 8652278 -150947505 + MTA_Mm LTR MaLR 1 396 0 2 651 251 180 0 20 chr3 8652321 8652372 -150947411 + L1M3 LINE L1 4513 4562 -1578 2 651 1027 183 86 0 chr3 8652502 8652699 -150947084 + B3 SINE B2 1 214 -2 2 651 215 267 0 0 chr3 8653057 8653102 -150946681 - RSINE1 SINE B4 -25 140 96 2 651 3144 166 144 12 chr3 8653135 8653786 -150945997 + RMER19A LTR ERVK 1 737 0 2 651 440 302 0 0 chr3 8653786 8653882 -150945901 - RSINE1 SINE B4 -29 136 41 2 651 21014 57 2 2 chr3 8653999 8657357 -150942426 - L1Md_F2 LINE L1 -1 6581 3226 2 651 207 279 0 16 chr3 8657552 8657614 -150942169 + (TCCA)n Simple_repeat Simple_repeat 3 63 0 2 651 294 313 146 64 chr3 8657617 8657897 -150941886 - L2a LINE L2 -6 3420 3118 2 651 438 239 175 105 chr3 8657918 8658147 -150941636 - MLT1A1 LTR MaLR 0 408 135 2 651 293 253 12 12 chr3 8658500 8658580 -150941203 + B3A SINE B2 38 117 -81 2 651 452 331 18 48 chr3 8659675 8659840 -150939943 + RSINE1 SINE B4 4 163 -2 2 651 244 339 32 157 chr3 8660077 8660294 -150939489 + MTE-int LTR MaLR 732 921 -659 2 651 1027 218 15 0 chr3 8660642 8660844 -150938939 + B3 SINE B2 1 205 -11 2 651 5377 110 36 40 chr3 8660910 8661819 -150937964 + RMER17A2 LTR ERVK 1 906 0 2 651 27 29 0 0 chr3 8667249 8667283 -150932500 + GC_rich Low_complexity Low_complexity 1 34 0 2 651 297 75 0 0 chr3 8667468 8667508 -150932275 + (CGG)n Simple_repeat Simple_repeat 1 40 0 2 651 21 0 0 0 chr3 8667624 8667645 -150932138 + GC_rich Low_complexity Low_complexity 1 21 0 2 651 303 291 130 30 chr3 8669050 8669181 -150930602 + B1_Mur2 SINE Alu 5 148 -1 2 651 191 366 45 25 chr3 8669283 8669440 -150930343 - L2a LINE L2 -27 3399 3240 2 651 315 220 196 0 chr3 8669945 8670065 -150929718 + B1_Mm SINE Alu 1 143 -7 2 651 348 172 147 88 chr3 8670086 8670188 -150929595 + PB1D10 SINE Alu 8 115 -2 2 651 207 286 90 13 chr3 8670343 8670421 -150929362 + MIR SINE MIR 87 170 -92 2 651 212 259 172 30 chr3 8670989 8671114 -150928669 + MIR SINE MIR 6 147 -121 2 651 531 278 30 0 chr3 8671136 8671269 -150928514 + ID_B1 SINE B4 87 223 -1 2 651 258 164 0 83 chr3 8671298 8671358 -150928425 + MT2B2 LTR ERVL 530 584 0 2 651 1533 274 27 19 chr3 8671407 8671812 -150927971 + MTD LTR MaLR 10 403 -16 2 651 2611 97 15 26 chr3 8672487 8672877 -150926906 - ORR1B1 LTR MaLR -8 386 1 2 651 561 218 73 4 chr3 8672877 8673040 -150926743 - B3A SINE B2 -14 202 6 2 651 1537 96 0 5 chr3 8673179 8673389 -150926394 + MTC LTR MaLR 3 211 -210 2 651 889 197 16 107 chr3 8674286 8674297 -150925486 + MTC LTR MaLR 197 207 -214 2 651 594 0 0 0 chr3 8674297 8674363 -150925420 + (GA)n Simple_repeat Simple_repeat 2 67 0 2 651 889 197 16 107 chr3 8674363 8674595 -150925188 + MTC LTR MaLR 208 417 -4 2 651 324 315 60 45 chr3 8674566 8674699 -150925084 + MLT1A LTR MaLR 54 188 -186 2 651 240 341 34 68 chr3 8674762 8674852 -150924931 + MLT1A LTR MaLR 218 304 -86 2 651 3091 29 0 0 chr3 8674852 8675198 -150924585 + ORR1A1 LTR MaLR 1 346 0 2 651 240 341 34 68 chr3 8675198 8675255 -150924528 + MLT1A LTR MaLR 305 360 -30 2 651 261 304 14 0 chr3 8675579 8675629 -150924154 - RMER12 LTR ERVK -507 815 765 2 651 625 228 84 30 chr3 8675629 8675796 -150923987 + B3A SINE B2 2 177 -21 2 651 312 231 0 0 chr3 8676027 8676105 -150923678 + (TA)n Simple_repeat Simple_repeat 2 79 0 2 651 234 91 0 0 chr3 8676138 8676171 -150923612 + (TA)n Simple_repeat Simple_repeat 1 33 0 2 651 2396 165 118 17 chr3 8676773 8677249 -150922534 - RLTR28 LTR ERVL 0 524 1 2 651 1906 126 70 96 chr3 8677354 8677526 -150922257 + ORR1C1 LTR MaLR 3 164 -214 2 651 180 0 0 0 chr3 8677526 8677546 -150922237 + (C)n Simple_repeat Simple_repeat 1 20 0 2 651 1906 126 70 96 chr3 8677546 8677759 -150922024 + ORR1C1 LTR MaLR 165 378 0 2 651 355 203 0 0 chr3 8677828 8677892 -150921891 - ID4 SINE ID -18 65 2 2 651 440 210 160 8 chr3 8678141 8678266 -150921517 - B1F SINE Alu 0 149 6 2 651 2038 170 118 11 chr3 8678323 8678781 -150921002 - RMER1B Other Other -16 1050 544 2 651 1228 210 12 4 chr3 8678784 8679042 -150920741 - RMER1B Other Other -761 305 46 2 651 22 0 0 0 chr3 8679480 8679502 -150920281 + AT_rich Low_complexity Low_complexity 1 22 0 2 651 1491 282 105 7 chr3 8679522 8680064 -150919719 + Lx8 LINE L1 6102 6696 -777 2 651 260 254 0 0 chr3 8680398 8680457 -150919326 - MTEa LTR MaLR -7 372 314 2 651 423 321 101 40 chr3 8680517 8680715 -150919068 - MTEa LTR MaLR -169 210 1 2 651 441 0 0 0 chr3 8680864 8680913 -150918870 + (TC)n Simple_repeat Simple_repeat 2 50 0 2 651 534 31 0 0 chr3 8680913 8680976 -150918807 + (TG)n Simple_repeat Simple_repeat 1 64 0 2 651 315 204 287 15 chr3 8681490 8681577 -150918206 + B1_Mur4 SINE Alu 20 130 -20 2 651 631 197 94 0 chr3 8682312 8682429 -150917354 - B1_Mur1 SINE Alu -20 129 2 2 651 704 80 0 0 chr3 8682684 8682777 -150917006 + B1_Mus2 SINE Alu 47 139 -8 3 651 1034 135 6 0 chr3 8682777 8682955 -150916828 + (GA)n Simple_repeat Simple_repeat 2 180 0 3 651 1194 73 11 11 chr3 8682974 8683154 -150916629 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 3 651 441 0 0 0 chr3 8683154 8683203 -150916580 + (GGAA)n Simple_repeat Simple_repeat 1 49 0 3 651 288 281 37 43 chr3 8683679 8683837 -150915946 + L1M4 LINE L1 5426 5593 -587 3 651 1114 80 0 0 chr3 8683837 8683975 -150915808 + B1_Mus2 SINE Alu 1 138 -9 3 651 289 0 49 0 chr3 8683975 8684016 -150915767 + (CAAAA)n Simple_repeat Simple_repeat 2 44 0 3 651 240 298 115 27 chr3 8684016 8684080 -150915703 + L1M4 LINE L1 5594 5657 -523 3 651 447 52 0 0 chr3 8684368 8684426 -150915357 + (TG)n Simple_repeat Simple_repeat 2 59 0 3 651 1079 50 132 36 chr3 8684542 8684709 -150915074 + L1Md_F2 LINE L1 6399 6581 -1 3 651 245 265 58 15 chr3 8684718 8684844 -150914939 + L1MB8 LINE L1 6046 6172 -12 3 651 221 233 0 0 chr3 8685566 8685609 -150914174 + G-rich Low_complexity Low_complexity 2 44 0 3 651 861 210 92 5 chr3 8686282 8686488 -150913295 + ID_B1 SINE B4 1 224 0 3 651 518 271 47 47 chr3 8686558 8686771 -150913012 - ID_B1 SINE B4 -7 217 5 3 651 806 184 15 7 chr3 8687472 8687609 -150912174 - B1_Mur2 SINE Alu -9 140 3 3 651 747 237 61 10 chr3 8687687 8687883 -150911900 + B3 SINE B2 2 207 -9 3 651 722 264 98 0 chr3 8687927 8688120 -150911663 + ID_B1 SINE B4 7 218 -6 3 651 286 326 130 0 chr3 8688387 8688479 -150911304 + PB1D10 SINE Alu 12 115 -2 3 651 274 204 19 0 chr3 8688507 8688561 -150911222 + ID4 SINE ID 28 82 -1 3 651 438 254 127 0 chr3 8688593 8688719 -150911064 + B1_Mur1 SINE Alu 3 144 -5 3 651 803 128 72 0 chr3 8688778 8688903 -150910880 + B1_Mus1 SINE Alu 3 136 -12 3 651 213 39 0 0 chr3 8688903 8688929 -150910854 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 3 651 288 0 0 0 chr3 8689298 8689330 -150910453 + (TG)n Simple_repeat Simple_repeat 2 33 0 3 651 645 302 100 19 chr3 8689333 8689593 -150910190 - B4A SINE B4 0 292 12 3 651 333 126 147 17 chr3 8689687 8689764 -150910019 + B1_Mur4 SINE Alu 34 144 -6 3 651 822 105 35 0 chr3 8689764 8689907 -150909876 + (GGGAGA)n Simple_repeat Simple_repeat 2 149 0 3 651 276 170 0 0 chr3 8689912 8689965 -150909818 + GA-rich Low_complexity Low_complexity 1 53 0 3 651 395 312 43 7 chr3 8690350 8690365 -150909418 + B1F SINE Alu 4 147 -2 3 651 539 240 16 24 chr3 8690365 8690489 -150909294 + ID_B1 SINE B4 100 222 -2 3 651 322 297 81 0 chr3 8690795 8690906 -150908877 + PB1D7 SINE Alu 1 120 0 3 651 1824 162 151 18 chr3 8691394 8691784 -150907999 + RMER10A LTR ERVL 1 442 0 3 651 279 0 0 0 chr3 8692119 8692150 -150907633 + (TAAA)n Simple_repeat Simple_repeat 1 31 0 3 651 524 229 137 0 chr3 8692923 8693076 -150906707 - MTE2b LTR MaLR 0 379 206 3 651 5646 77 8 1 chr3 8693076 8693816 -150905967 + L1_Mus1 LINE L1 5823 6567 0 3 651 597 242 12 25 chr3 8693865 8694026 -150905757 - HAL1-2a_MD LINE L1 -519 2505 2347 3 651 422 218 0 9 chr3 8694026 8694137 -150905646 + (CTG)n Simple_repeat Simple_repeat 2 111 0 3 651 296 333 88 36 chr3 8694537 8694674 -150905109 + RSINE1 SINE B4 5 148 -17 3 651 342 0 0 0 chr3 8694678 8694716 -150905067 + (TAAA)n Simple_repeat Simple_repeat 4 41 0 3 651 845 265 5 29 chr3 8695582 8695788 -150903995 - B4 SINE B4 -16 276 76 3 651 357 125 0 0 chr3 8695788 8695844 -150903939 + (CCTG)n Simple_repeat Simple_repeat 1 56 0 3 651 447 181 24 12 chr3 8695851 8695935 -150903848 - B4 SINE B4 -204 88 4 3 651 21 36 0 0 chr3 8697025 8697053 -150902730 + AT_rich Low_complexity Low_complexity 1 28 0 3 651 2201 127 9 12 chr3 8697057 8697384 -150902399 - ORR1A4 LTR MaLR -2 327 2 3 651 458 299 74 13 chr3 8697410 8697559 -150902224 - RSINE1 SINE B4 -2 163 6 3 651 627 288 72 40 chr3 8697640 8697965 -150901818 - ORR1E LTR MaLR 0 379 22 3 651 525 32 0 0 chr3 8698176 8698239 -150901544 + (TC)n Simple_repeat Simple_repeat 1 63 0 3 651 370 309 48 112 chr3 8698972 8699223 -150900560 + MLT1A0 LTR MaLR 10 244 -121 3 651 321 267 22 0 chr3 8699320 8699410 -150900373 + MLT1A0 LTR MaLR 274 365 0 3 651 266 332 131 30 chr3 8699819 8700018 -150899765 - LTR88b LTR Gypsy? -449 388 170 3 651 1873 138 16 22 chr3 8700544 8700856 -150898927 + ORR1A3 LTR MaLR 17 326 0 3 651 410 271 143 8 chr3 8700977 8701096 -150898687 - ID_B1 SINE B4 -2 222 88 3 651 476 16 16 0 chr3 8701240 8701301 -150898482 + (CA)n Simple_repeat Simple_repeat 1 62 0 3 651 1440 67 0 0 chr3 8701415 8702163 -150897620 + (CAGG)n Simple_repeat Simple_repeat 1 748 0 3 651 404 268 0 0 chr3 8702163 8702245 -150897538 + B4 SINE B4 205 286 -6 3 651 3636 166 35 16 chr3 8702348 8702367 -150897416 + RMER13B LTR ERVK 162 182 -726 3 651 258 56 0 0 chr3 8702367 8702403 -150897380 + (CA)n Simple_repeat Simple_repeat 1 36 0 3 651 3636 174 36 18 chr3 8702403 8703097 -150896686 + RMER13B LTR ERVK 153 847 -13 3 651 511 176 108 0 chr3 8703069 8703171 -150896612 + RMER13B LTR ERVK 794 906 -2 3 651 762 11 0 0 chr3 8703189 8703276 -150896507 + (CATATA)n Simple_repeat Simple_repeat 1 87 0 3 651 212 291 36 0 chr3 8703284 8703339 -150896444 + BC1_Mm scRNA scRNA 14 70 -82 3 651 1289 228 93 31 chr3 8703367 8703752 -150896031 - RLTR16 LTR ERVK 0 505 97 3 651 232 295 24 49 chr3 8703980 8704062 -150895721 - ID4_ SINE ID 0 83 4 3 651 347 289 8 34 chr3 8704068 8704186 -150895597 - ID_B1 SINE B4 0 224 110 3 651 508 210 32 56 chr3 8704219 8704345 -150895438 - PB1 SINE Alu -2 125 3 3 651 1630 221 53 6 chr3 8704415 8704757 -150895026 - MTC LTR MaLR -61 360 3 3 651 814 260 46 42 chr3 8704757 8705017 -150894766 + MLT1B LTR MaLR 128 388 -2 3 651 235 288 25 25 chr3 8705315 8705415 -150894368 - MIR SINE MIR -94 174 72 3 651 200 283 19 0 chr3 8705592 8705645 -150894138 + (CATG)n Simple_repeat Simple_repeat 1 54 0 3 651 841 277 109 17 chr3 8705679 8705918 -150893865 - B4A SINE B4 -18 274 14 3 651 278 159 0 0 chr3 8706199 8706243 -150893540 + ID_B1 SINE B4 114 157 -67 3 651 277 289 23 35 chr3 8706243 8706285 -150893498 + PB1D10 SINE Alu 33 117 0 3 651 323 141 16 0 chr3 8706290 8706354 -150893429 + CT-rich Low_complexity Low_complexity 2 66 0 3 651 21 71 0 0 chr3 8706897 8706939 -150892844 + AT_rich Low_complexity Low_complexity 1 42 0 3 651 519 32 149 0 chr3 8707040 8707134 -150892649 + L1Md_F3 LINE L1 6477 6584 0 3 651 799 209 101 15 chr3 8707375 8707574 -150892209 + ID_B1 SINE B4 2 217 -7 3 651 508 343 6 11 chr3 8708026 8708200 -150891583 + Tigger5 DNA MER2_type 1 173 -2233 3 651 510 17 0 0 chr3 8708517 8708576 -150891207 + (CA)n Simple_repeat Simple_repeat 1 59 0 3 651 519 95 0 0 chr3 8709891 8709965 -150889818 + (TTTTC)n Simple_repeat Simple_repeat 3 76 0 3 651 496 281 52 7 chr3 8711263 8711399 -150888384 - ID_B1 SINE B4 -1 223 82 3 651 871 255 19 0 chr3 8712124 8712326 -150887457 + ID_B1 SINE B4 2 220 -72 3 651 187 312 9 114 chr3 8712420 8712525 -150887258 - MIRm SINE MIR -2 274 181 3 651 261 306 111 61 chr3 8712720 8712901 -150886882 + MIRb SINE MIR 38 227 -41 3 651 315 0 0 0 chr3 8713498 8713533 -150886250 + (CA)n Simple_repeat Simple_repeat 1 35 0 3 651 299 85 21 0 chr3 8713701 8713748 -150886035 + (TTCTC)n Simple_repeat Simple_repeat 3 50 0 3 651 345 161 0 0 chr3 8713749 8713811 -150885972 - B1_Mur2 SINE Alu -1 148 87 3 651 252 194 46 46 chr3 8713753 8713818 -150885965 - ID_B1 SINE B4 -5 219 155 3 651 251 273 26 0 chr3 8713944 8714021 -150885762 + GA-rich Low_complexity Low_complexity 1 79 0 3 651 236 231 0 71 chr3 8714059 8714129 -150885654 + GA-rich Low_complexity Low_complexity 2 66 0 3 651 425 135 0 0 chr3 8714152 8714224 -150885559 - B1_Mur4 SINE Alu -32 88 17 3 651 305 155 73 134 chr3 8714153 8714235 -150885548 - MT2B LTR ERVL -353 248 172 3 651 646 277 81 1 chr3 8714267 8714456 -150885327 + B3A SINE B2 1 204 -12 3 651 248 271 129 0 chr3 8714805 8714875 -150884908 + ID_B1 SINE B4 141 219 -5 3 651 2067 181 25 25 chr3 8714958 8715400 -150884383 - RMER10A LTR ERVL 0 442 1 3 651 726 70 270 0 chr3 8715477 8715592 -150884191 - B1_Mus1 SINE Alu -1 147 2 3 651 182 245 37 130 chr3 8715662 8715770 -150884013 + L2b LINE L2 3093 3190 -185 3 651 551 147 9 0 chr3 8715910 8716026 -150883757 + GA-rich Low_complexity Low_complexity 1 117 0 3 651 638 269 14 7 chr3 8719805 8719947 -150879836 + ID_B1 SINE B4 82 224 0 3 651 189 0 0 0 chr3 8719947 8719968 -150879815 + (A)n Simple_repeat Simple_repeat 1 21 0 3 651 354 301 101 20 chr3 8719974 8720123 -150879660 + RSINE1 SINE B4 3 163 -2 3 651 25 51 0 0 chr3 8720132 8720171 -150879612 + AT_rich Low_complexity Low_complexity 1 39 0 3 651 590 285 8 0 chr3 8720175 8720298 -150879485 - RSINE1 SINE B4 -7 158 35 3 651 437 0 0 19 chr3 8721296 8721350 -150878433 + (TG)n Simple_repeat Simple_repeat 2 54 0 3 651 339 315 99 44 chr3 8721490 8721742 -150878041 + Tigger15a DNA TcMar 401 666 -49 3 651 500 198 57 0 chr3 8722783 8722889 -150876894 + PB1D10 SINE Alu 1 112 -5 3 651 282 175 51 101 chr3 8722938 8723116 -150876667 + (CCCTG)n Simple_repeat Simple_repeat 5 173 0 3 651 307 328 96 96 chr3 8724353 8724488 -150875295 - B1F1 SINE Alu -14 135 1 3 651 217 283 132 124 chr3 8724488 8724571 -150875212 - B4A SINE B4 -207 85 2 4 651 634 243 0 75 chr3 8724621 8724781 -150875002 + B1_Mur3 SINE Alu 2 149 0 4 651 744 241 68 42 chr3 8724781 8724961 -150874822 - B3A SINE B2 -9 189 3 4 651 833 298 36 51 chr3 8725055 8725331 -150874452 - B4A SINE B4 -10 282 11 4 651 930 148 180 0 chr3 8725477 8725666 -150874117 + URR1B DNA MER1_type 1 223 -2 4 651 520 238 108 57 chr3 8726388 8726563 -150873220 + B3A SINE B2 1 186 -30 4 651 348 125 0 0 chr3 8726575 8726639 -150873144 + (CA)n Simple_repeat Simple_repeat 1 64 0 4 651 662 219 214 0 chr3 8726677 8726855 -150872928 + B3 SINE B2 1 216 0 4 651 307 129 57 0 chr3 8727014 8727084 -150872699 + GA-rich Low_complexity Low_complexity 3 76 0 4 651 252 0 0 0 chr3 8727092 8727120 -150872663 + (ATTG)n Simple_repeat Simple_repeat 2 29 0 4 651 298 197 156 2 chr3 8727120 8727212 -150872571 + L1M5 LINE L1 2918 3023 -3123 4 651 267 288 80 18 chr3 8727241 8727354 -150872429 + PB1D9 SINE Alu 1 120 0 4 651 435 244 75 0 chr3 8727664 8727795 -150871988 + PB1D9 SINE Alu 1 149 0 4 651 467 232 80 0 chr3 8727983 8728095 -150871688 - B3 SINE B2 0 216 96 4 651 377 353 95 0 chr3 8728149 8728265 -150871518 + ID_B1 SINE B4 87 213 -11 4 651 339 306 70 32 chr3 8728288 8728474 -150871309 + L1M5 LINE L1 3386 3578 -2568 4 651 448 315 11 22 chr3 8728539 8728721 -150871062 + L1M5 LINE L1 3692 3871 -2275 4 651 480 48 0 0 chr3 8729241 8729304 -150870479 + (CAGAGA)n Simple_repeat Simple_repeat 2 64 0 4 651 547 202 0 44 chr3 8729304 8729418 -150870365 - RSINE1 SINE B4 -54 111 3 4 651 419 341 131 27 chr3 8730145 8730404 -150869379 + B4A SINE B4 3 288 -4 4 651 433 262 42 12 chr3 8730411 8730577 -150869206 + (CA)n Simple_repeat Simple_repeat 1 171 0 4 651 360 148 0 0 chr3 8732230 8732291 -150867492 + ID_B1 SINE B4 98 158 -66 4 651 315 0 0 0 chr3 8732295 8732330 -150867453 + (CA)n Simple_repeat Simple_repeat 2 36 0 4 651 347 248 0 90 chr3 8732330 8732375 -150867408 + PB1D10 SINE Alu 81 117 0 4 651 524 310 97 21 chr3 8732590 8732920 -150866863 + L1MA6 LINE L1 5772 6126 -174 4 651 674 241 86 70 chr3 8733510 8733697 -150866086 + B3 SINE B2 5 194 -1 4 651 21 0 0 0 chr3 8734383 8734404 -150865379 + AT_rich Low_complexity Low_complexity 1 21 0 4 651 384 207 33 44 chr3 8735368 8735459 -150864324 + ID_B1 SINE B4 118 207 -17 4 651 404 171 0 54 chr3 8735431 8735524 -150864259 - B1_Mur4 SINE Alu -61 89 2 4 651 369 304 7 56 chr3 8735524 8735606 -150864177 - ID SINE ID -143 81 7 4 651 648 220 80 19 chr3 8737258 8737420 -150862363 - B2_Mm2 SINE B2 -23 172 1 4 651 186 71 0 0 chr3 8737715 8737743 -150862040 + (TTAA)n Simple_repeat Simple_repeat 3 30 0 4 651 429 318 74 74 chr3 8738616 8738833 -150860950 - ORR1E LTR MaLR -81 278 62 4 651 228 302 0 16 chr3 8738981 8739045 -150860738 + B4A SINE B4 1 63 -229 4 651 549 203 111 15 chr3 8740109 8740244 -150859539 - B1F SINE Alu -1 148 1 4 651 263 287 50 60 chr3 8740514 8740614 -150859169 + B1_Mur3 SINE Alu 1 99 -50 4 651 4834 47 0 0 chr3 8742095 8742667 -150857116 + L1Md_F2 LINE L1 5999 6570 -12 4 651 706 211 165 16 chr3 8742906 8743094 -150856689 - B3 SINE B2 0 216 1 4 651 424 295 64 14 chr3 8743098 8743111 -150856672 - B1F SINE Alu 0 149 138 4 651 435 68 0 0 chr3 8743111 8743170 -150856613 + (TTA)n Simple_repeat Simple_repeat 1 59 0 4 651 424 295 64 14 chr3 8743170 8743297 -150856486 - B1F SINE Alu -12 137 2 4 651 566 275 23 0 chr3 8743174 8743305 -150856478 - ID_B1 SINE B4 -16 208 75 4 651 814 188 0 13 chr3 8743349 8743500 -150856283 + B1_Mur2 SINE Alu 1 149 0 4 651 724 285 117 5 chr3 8745447 8745669 -150854114 + B4A SINE B4 1 247 -45 4 651 894 215 88 0 chr3 8746453 8746658 -150853125 + URR1B DNA MER1_type 1 223 -2 4 651 915 209 83 66 chr3 8747309 8747474 -150852309 + MTD LTR MaLR 20 196 -223 4 651 4841 80 5 3 chr3 8747474 8748114 -150851669 + L1_Mus3 LINE L1 5998 6638 0 4 651 915 209 83 66 chr3 8748114 8748189 -150851594 + MTD LTR MaLR 197 264 -155 4 651 250 26 51 0 chr3 8748410 8748449 -150851334 + (CTTG)n Simple_repeat Simple_repeat 3 43 0 4 651 227 263 154 26 chr3 8748473 8748551 -150851232 - RLTR25B LTR ERVK -487 541 454 4 651 354 161 264 0 chr3 8748487 8748574 -150851209 - B1_Mus2 SINE Alu -32 118 9 4 651 626 185 92 55 chr3 8748578 8748795 -150850988 + Lx7 LINE L1 7468 7692 -4 4 651 494 290 65 0 chr3 8748825 8748979 -150850804 + ID_B1 SINE B4 2 165 -59 4 651 566 203 130 0 chr3 8748979 8749102 -150850681 - MTD LTR MaLR -2 417 279 4 651 210 37 0 0 chr3 8749156 8749183 -150850600 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 4 651 967 42 0 0 chr3 8749183 8749301 -150850482 - B1_Mm SINE Alu -2 145 28 4 651 802 235 219 4 chr3 8749294 8749550 -150850233 + RMER15 LTR ERVL 264 574 -1 4 651 902 282 129 30 chr3 8750303 8750698 -150849085 - Lx8 LINE L1 -250 7223 6790 4 651 536 15 0 0 chr3 8750870 8750936 -150848847 + L1_Mus2 LINE L1 6500 6565 -1 4 651 183 139 0 0 chr3 8750941 8750977 -150848806 + (A)n Simple_repeat Simple_repeat 1 36 0 4 651 518 227 9 0 chr3 8750997 8751107 -150848676 + MTEa LTR MaLR 1 111 -268 4 651 683 278 209 19 chr3 8751163 8751478 -150848305 - MTE2b LTR MaLR 0 379 5 4 651 616 302 83 21 chr3 8751680 8752196 -150847587 + L1M5 LINE L1 5137 5688 -476 4 651 239 266 16 0 chr3 8752277 8752341 -150847442 + L1M5 LINE L1 5856 5920 -259 4 651 266 220 51 0 chr3 8752525 8752584 -150847199 + L1ME3 LINE L1 5901 5962 -200 4 651 483 18 0 0 chr3 8752764 8752820 -150846963 + (CA)n Simple_repeat Simple_repeat 1 56 0 4 651 880 267 9 5 chr3 8752862 8753073 -150846710 + ID_B1 SINE B4 1 212 -12 4 651 687 197 28 21 chr3 8753201 8753346 -150846437 + B1_Mur1 SINE Alu 4 149 0 4 651 254 306 17 8 chr3 8756796 8756881 -150842902 + MIR SINE MIR 28 111 -165 4 651 504 299 116 98 chr3 8757019 8757356 -150842427 - ORR1E LTR MaLR -13 346 4 4 651 1805 199 73 23 chr3 8758311 8758708 -150841075 + MTC LTR MaLR 5 421 0 4 651 207 219 62 0 chr3 8759672 8759736 -150840047 + (TATATG)n Simple_repeat Simple_repeat 3 70 0 4 651 450 36 0 0 chr3 8759882 8759938 -150839845 + (TG)n Simple_repeat Simple_repeat 2 57 0 4 651 515 269 34 7 chr3 8759942 8760088 -150839695 - RSINE1 SINE B4 -13 152 3 4 651 862 280 55 77 chr3 8760324 8760703 -150839080 + MTEb LTR MaLR 1 371 -8 4 651 252 286 0 16 chr3 8760731 8760795 -150838988 - B1F SINE Alu -20 129 67 4 651 326 257 170 9 chr3 8760740 8760846 -150838937 - ID_B1 SINE B4 -25 199 77 4 651 680 214 82 58 chr3 8761725 8761933 -150837850 + B3 SINE B2 4 216 0 4 651 183 333 57 57 chr3 8762028 8762152 -150837631 + MIRb SINE MIR 36 159 -109 4 651 369 0 0 0 chr3 8762237 8762278 -150837505 + (CA)n Simple_repeat Simple_repeat 1 41 0 4 651 252 287 134 36 chr3 8762540 8762652 -150837131 - B1F SINE Alu -1 148 26 4 651 265 297 0 44 chr3 8763416 8763599 -150836184 + C-rich Low_complexity Low_complexity 2 176 0 4 651 375 129 32 81 chr3 8763544 8763729 -150836054 + (CACCT)n Simple_repeat Simple_repeat 3 178 0 4 651 291 266 35 6 chr3 8763754 8763924 -150835859 + CT-rich Low_complexity Low_complexity 1 175 0 4 651 351 170 27 73 chr3 8763910 8764283 -150835500 + (CACCT)n Simple_repeat Simple_repeat 1 355 0 4 651 246 267 0 59 chr3 8764147 8764334 -150835449 + CT-rich Low_complexity Low_complexity 5 180 0 4 651 505 338 52 0 chr3 8764495 8764649 -150835134 - ID_B1 SINE B4 -54 170 9 4 651 325 328 97 0 chr3 8764760 8764894 -150834889 + B1F SINE Alu 3 149 0 4 651 209 329 146 0 chr3 8765363 8765445 -150834338 - MIRm SINE MIR -137 139 46 4 651 262 276 60 46 chr3 8765451 8765597 -150834186 - MTEa LTR MaLR -6 373 218 4 651 300 83 0 0 chr3 8765910 8765958 -150833825 + (TTTG)n Simple_repeat Simple_repeat 2 49 0 4 651 242 261 43 0 chr3 8766856 8766925 -150832858 - MIR3 SINE MIR -136 72 1 4 651 287 290 20 10 chr3 8767286 8767387 -150832396 + GA-rich Low_complexity Low_complexity 2 103 0 4 651 325 321 9 9 chr3 8767428 8767535 -150832248 + G-rich Low_complexity Low_complexity 5 111 0 4 651 378 262 149 0 chr3 8768424 8768531 -150831252 + RSINE1 SINE B4 2 124 -41 4 651 351 0 0 0 chr3 8768563 8768602 -150831181 + (TTA)n Simple_repeat Simple_repeat 1 39 0 4 651 531 82 0 0 chr3 8768642 8768715 -150831068 + (TC)n Simple_repeat Simple_repeat 2 74 0 4 651 308 183 100 0 chr3 8768715 8768775 -150831008 - B1_Mus2 SINE Alu -55 92 27 4 651 495 0 0 0 chr3 8768777 8768832 -150830951 + (TAAA)n Simple_repeat Simple_repeat 1 55 0 4 651 315 294 0 81 chr3 8769162 8769347 -150830436 + (CAGC)n Simple_repeat Simple_repeat 3 172 0 4 651 438 274 65 22 chr3 8769362 8769612 -150830171 - L1MB1 LINE L1 -194 5989 5743 4 651 339 287 65 14 chr3 8769742 8769880 -150829903 + MLT1B LTR MaLR 209 353 -37 4 651 322 270 13 107 chr3 8771217 8771354 -150828429 + B4 SINE B4 104 228 -64 4 651 345 224 169 96 chr3 8771354 8771532 -150828251 + B3A SINE B2 1 191 -7 4 651 297 0 0 0 chr3 8771784 8771817 -150827966 + (TTTA)n Simple_repeat Simple_repeat 4 36 0 4 651 1156 102 0 0 chr3 8771817 8771974 -150827809 - B2_Mm2 SINE B2 -38 157 1 5 651 522 222 65 138 chr3 8772078 8772324 -150827459 + MTEa LTR MaLR 140 367 -12 5 651 342 275 9 0 chr3 8773408 8773517 -150826266 - LTR16E1 LTR ERVL -3 535 426 5 651 1607 47 0 5 chr3 8773620 8773814 -150825969 - B2_Mm2 SINE B2 -1 194 2 5 651 739 300 75 62 chr3 8773923 8774307 -150825476 - MLT1F1 LTR MaLR -4 565 177 5 651 780 264 125 30 chr3 8774481 8774809 -150824974 - MTEb LTR MaLR -13 366 8 5 651 382 169 127 0 chr3 8775469 8775540 -150824243 + MTC LTR MaLR 1 80 -341 5 651 2766 206 93 17 chr3 8775540 8776114 -150823669 + Lx6 LINE L1 6828 7449 -11 5 651 207 0 0 0 chr3 8776114 8776137 -150823646 + (GGAA)n Simple_repeat Simple_repeat 2 24 0 5 651 1056 112 6 16 chr3 8776137 8776319 -150823464 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 5 651 2766 206 93 17 chr3 8776319 8776331 -150823452 + Lx6 LINE L1 7450 7459 -1 5 651 370 122 40 0 chr3 8776347 8776421 -150823362 + GA-rich Low_complexity Low_complexity 2 78 0 5 651 1195 89 6 6 chr3 8776421 8776601 -150823182 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 5 651 486 0 0 0 chr3 8776601 8776655 -150823128 + (GGAA)n Simple_repeat Simple_repeat 1 54 0 5 651 888 91 8 0 chr3 8776656 8776777 -150823006 + MTC LTR MaLR 95 216 -205 5 651 1643 251 101 17 chr3 8776785 8777259 -150822524 + Lx6 LINE L1 6947 7460 0 5 651 2936 158 192 21 chr3 8777279 8777879 -150821904 + MTC-int LTR MaLR 441 1142 -116 5 651 2788 33 0 15 chr3 8777879 8778220 -150821563 - L1Md_F2 LINE L1 -6 6576 6241 5 651 2626 161 192 21 chr3 8778220 8778318 -150821465 + MTC-int LTR MaLR 1143 1257 -1 5 651 2410 137 48 36 chr3 8778318 8778734 -150821049 + MTC LTR MaLR 1 421 0 5 651 1115 78 0 11 chr3 8779132 8779314 -150820469 + (TG)n Simple_repeat Simple_repeat 1 180 0 5 651 585 285 28 28 chr3 8779406 8779583 -150820200 - B4 SINE B4 -115 177 1 5 651 431 35 0 17 chr3 8780582 8780640 -150819143 + (TA)n Simple_repeat Simple_repeat 2 58 0 5 651 324 237 16 38 chr3 8780756 8780857 -150818926 + B1_Mur4 SINE Alu 18 117 -32 5 651 943 242 77 15 chr3 8780951 8781211 -150818572 - B4A SINE B4 -14 278 3 5 81 2616 137 174 22 chr3 8781542 8782048 -150817735 + RMER4B LTR ERVK 1 583 -2 5 652 563 71 0 12 chr3 8783393 8783478 -150816305 + RLTR13D4 LTR ERVK 803 886 -147 5 652 1871 56 20 0 chr3 8783478 8783730 -150816053 - RLTR1B LTR ERV1 0 512 256 5 652 917 124 11 66 chr3 8783729 8783910 -150815873 - RLTR1B LTR ERV1 -207 305 135 5 652 837 135 13 51 chr3 8784034 8784190 -150815593 + RLTR13D4 LTR ERVK 884 1033 0 5 652 2793 169 50 21 chr3 8784206 8784727 -150815056 + ETnERV2-int LTR ERVK 1 536 -6870 5 652 1181 180 24 8 chr3 8784868 8785114 -150814669 + RLTR1 LTR ERV1 371 620 -4 5 652 1025 245 121 73 chr3 8785116 8785688 -150814095 + MMVL30-int LTR ERV1 25 623 -6933 5 652 1784 195 164 46 chr3 8786350 8786890 -150812893 + MMVL30-int LTR ERV1 1158 1759 -3304 5 652 387 0 0 0 chr3 8786890 8786933 -150812850 + (GA)n Simple_repeat Simple_repeat 2 44 0 5 652 383 84 0 101 chr3 8786933 8787003 -150812780 + MMVL30-int LTR ERV1 1760 1824 -3239 5 652 14385 113 43 38 chr3 8787055 8788392 -150811391 + ETnERV2-int LTR ERVK 1049 2393 -5013 5 652 1184 37 0 0 chr3 8788392 8788528 -150811255 + B1_Mm SINE Alu 1 136 -11 5 652 555 16 0 0 chr3 8788528 8788592 -150811191 + (GA)n Simple_repeat Simple_repeat 1 64 0 5 652 14385 113 43 38 chr3 8788592 8789667 -150810116 + ETnERV2-int LTR ERVK 2394 3473 -3933 5 652 1794 217 19 49 chr3 8789674 8790100 -150809683 + ETnERV2-int LTR ERVK 4397 4809 -999 5 652 1904 195 7 5 chr3 8790199 8790604 -150809179 + ETnERV2-int LTR ERVK 5392 5780 -28 5 652 1221 148 0 9 chr3 8790613 8790825 -150808958 + RLTR13D4 LTR ERVK 1 210 -596 5 652 2860 86 6 48 chr3 8790800 8790989 -150808794 + RLTR13D4 LTR ERVK 616 760 -273 5 652 3005 28 31 6 chr3 8790989 8791345 -150808438 - RLTR10B2 LTR ERVK 0 365 1 5 652 2860 72 5 19 chr3 8791345 8791608 -150808175 + RLTR13D4 LTR ERVK 761 1019 -14 5 652 858 258 27 43 chr3 8792046 8792374 -150807409 - RLTR15 LTR ERVK -36 323 1 5 652 241 313 97 91 chr3 8792405 8792570 -150807213 - B4A SINE B4 -120 172 7 5 652 246 346 59 0 chr3 8792736 8792837 -150806946 + Lx8 LINE L1 7189 7295 -178 5 652 681 199 0 0 chr3 8792902 8793212 -150806571 + (CA)n Simple_repeat Simple_repeat 1 310 0 5 652 556 184 9 35 chr3 8794466 8794579 -150805204 - B1_Mur4 SINE Alu -1 149 40 5 652 218 81 27 0 chr3 8794597 8794634 -150805149 + (CAA)n Simple_repeat Simple_repeat 2 39 0 5 652 334 248 132 0 chr3 8795128 8795257 -150804526 + Tigger15a DNA TcMar 419 564 -151 5 652 290 169 0 15 chr3 8795814 8795880 -150803903 + (TA)n Simple_repeat Simple_repeat 1 65 0 5 652 265 367 112 30 chr3 8797833 8798128 -150801655 + MLT1F2 LTR MaLR 6 324 -236 5 652 317 319 76 114 chr3 8798496 8798839 -150800944 - MLT1H-int LTR MaLR -553 856 527 5 652 208 316 13 0 chr3 8798901 8798980 -150800803 + (TG)n Simple_repeat Simple_repeat 1 80 0 5 652 1070 228 60 102 chr3 8799198 8799579 -150800204 - ORR1D2 LTR MaLR 0 370 6 5 652 22 0 0 0 chr3 8800054 8800076 -150799707 + AT_rich Low_complexity Low_complexity 1 22 0 5 652 760 288 100 49 chr3 8800210 8800560 -150799223 + MTEa LTR MaLR 3 370 -9 5 652 2450 55 13 0 chr3 8800668 8800979 -150798804 + MusHAL1 LINE L1 983 1297 -1415 5 652 3706 59 25 23 chr3 8800976 8801493 -150798290 + MusHAL1 LINE L1 2193 2710 -2 5 652 1334 65 10 56 chr3 8801547 8801744 -150798039 + B2_Mm1t SINE B2 2 189 -4 5 652 23 0 0 0 chr3 8802069 8802092 -150797691 + AT_rich Low_complexity Low_complexity 1 23 0 5 652 180 77 0 0 chr3 8802173 8802199 -150797584 + (TTTA)n Simple_repeat Simple_repeat 4 29 0 5 652 2042 156 115 41 chr3 8802668 8803129 -150796654 + RLTR24 LTR ERV1 1 495 -34 5 652 667 270 103 30 chr3 8803177 8803448 -150796335 - B4A SINE B4 0 292 2 5 652 274 260 153 20 chr3 8803453 8803551 -150796232 - PB1D10 SINE Alu -6 111 1 5 652 490 227 104 45 chr3 8803789 8804031 -150795752 + L1MA9 LINE L1 5829 6090 -222 5 652 459 203 56 24 chr3 8804093 8804219 -150795564 + RLTR28B LTR ERVL 1 130 -351 5 652 700 166 29 155 chr3 8804683 8804890 -150794893 + RMER1B Other Other 874 1054 -12 5 652 210 143 0 0 chr3 8804895 8804930 -150794853 + (CCG)n Simple_repeat Simple_repeat 2 36 0 5 652 465 255 90 40 chr3 8805108 8805308 -150794475 - B3 SINE B2 -1 215 6 5 652 223 281 0 0 chr3 8805351 8805366 -150794417 - BC1_Mm scRNA scRNA -56 96 33 5 652 256 224 0 0 chr3 8805366 8805415 -150794368 - ID SINE ID -142 82 34 5 652 235 272 196 0 chr3 8806596 8806688 -150793095 + MIRb SINE MIR 25 134 -134 5 652 527 250 17 0 chr3 8806781 8806897 -150792886 + PB1D9 SINE Alu 2 119 -1 5 652 629 219 0 8 chr3 8806901 8807021 -150792762 + PB1D9 SINE Alu 2 120 0 5 652 2623 125 221 0 chr3 8807022 8807501 -150792282 - RMER4B LTR ERVK 0 585 1 5 652 279 0 0 0 chr3 8807512 8807543 -150792240 + (GGAAA)n Simple_repeat Simple_repeat 4 34 0 5 652 198 0 0 0 chr3 8807562 8807584 -150792199 + (A)n Simple_repeat Simple_repeat 1 22 0 5 652 616 256 72 50 chr3 8807756 8807937 -150791846 + ID_B1 SINE B4 1 185 -39 5 652 408 186 9 89 chr3 8807838 8807950 -150791833 + PB1D10 SINE Alu 10 112 -5 5 652 239 231 110 82 chr3 8807950 8807982 -150791801 - YREP_Mm Unknown Unknown -1504 306 159 5 652 224 297 0 30 chr3 8808581 8808647 -150791136 + ID_B1 SINE B4 74 137 -87 5 652 288 183 241 12 chr3 8808599 8808682 -150791101 + PB1D10 SINE Alu 10 111 -6 5 652 449 255 19 63 chr3 8809223 8809382 -150790401 - Lx8 LINE L1 -358 7115 6964 5 652 335 359 77 0 chr3 8809836 8809992 -150789791 + MIR SINE MIR 23 190 -72 5 652 1108 271 162 25 chr3 8810225 8810705 -150789078 + Lx8 LINE L1 6617 7162 -311 5 652 449 256 97 58 chr3 8811058 8811138 -150788645 + Lx8 LINE L1 7253 7333 -140 5 652 186 43 0 0 chr3 8811138 8811161 -150788622 + (CCAA)n Simple_repeat Simple_repeat 2 24 0 5 652 449 256 97 58 chr3 8811161 8811287 -150788496 + Lx8 LINE L1 7334 7467 -6 5 652 31787 98 20 10 chr3 8811351 8813853 -150785930 + L1_Mus3 LINE L1 451 3002 -2881 5 652 225 0 100 0 chr3 8813853 8813893 -150785890 + (CAAA)n Simple_repeat Simple_repeat 2 45 0 5 652 31787 93 16 4 chr3 8813893 8817496 -150782287 + L1_Mus3 LINE L1 3003 6629 -9 5 652 25 0 0 0 chr3 8817496 8817521 -150782262 + AT_rich Low_complexity Low_complexity 1 25 0 5 652 28 0 0 0 chr3 8817621 8817649 -150782134 + AT_rich Low_complexity Low_complexity 1 28 0 5 652 568 244 117 0 chr3 8818112 8818292 -150781491 + URR1B DNA MER1_type 2 202 -23 5 652 540 0 0 0 chr3 8818527 8818587 -150781196 + (GGGA)n Simple_repeat Simple_repeat 2 61 0 5 652 711 136 50 8 chr3 8819040 8819159 -150780624 + B3 SINE B2 7 130 -86 5 652 1195 68 0 0 chr3 8819990 8820136 -150779647 + B1_Mus2 SINE Alu 2 147 0 5 652 189 139 0 0 chr3 8820136 8820179 -150779604 + (A)n Simple_repeat Simple_repeat 1 43 0 5 652 503 156 0 112 chr3 8820305 8820457 -150779326 + Lx3C LINE L1 6840 6974 -2 5 652 207 98 73 0 chr3 8820459 8820500 -150779283 + A-rich Low_complexity Low_complexity 5 48 0 5 652 23 33 0 0 chr3 8822015 8822045 -150777738 + AT_rich Low_complexity Low_complexity 1 30 0 5 652 338 304 17 35 chr3 8822349 8822465 -150777318 + ID_B1 SINE B4 98 211 -13 5 652 586 232 35 28 chr3 8822515 8822657 -150777126 + B1F2 SINE Alu 7 149 0 5 652 334 388 8 0 chr3 8822748 8822882 -150776901 + B1F SINE Alu 3 137 -12 5 652 1332 86 11 0 chr3 8826483 8826658 -150773125 + B2_Mm1t SINE B2 3 179 -14 5 652 297 145 0 83 chr3 8826705 8826765 -150773018 + B2_Mm2 SINE B2 47 101 -94 5 652 44 0 0 0 chr3 8826787 8826831 -150772952 + AT_rich Low_complexity Low_complexity 1 44 0 5 652 947 250 9 0 chr3 8827136 8827352 -150772431 + L1MA6 LINE L1 5620 5837 -463 5 652 226 256 144 0 chr3 8827376 8827466 -150772317 + L1MA6 LINE L1 6198 6300 0 5 652 633 279 31 12 chr3 8827638 8827798 -150771985 + RSINE1 SINE B4 3 165 0 5 652 347 291 160 27 chr3 8827798 8827825 -150771958 + B3 SINE B2 2 213 -3 5 652 22 0 0 0 chr3 8828555 8828577 -150771206 + AT_rich Low_complexity Low_complexity 1 22 0 5 652 1790 286 64 18 chr3 8828646 8829205 -150770578 + Lx8 LINE L1 6253 6837 -636 5 652 407 244 8 105 chr3 8829206 8829339 -150770444 - MT2B LTR ERVL -315 286 167 5 652 941 25 0 0 chr3 8829221 8829340 -150770443 - B1_Mm SINE Alu -27 120 2 5 652 946 335 91 29 chr3 8829341 8829932 -150769851 + Lx8 LINE L1 6844 7471 -2 5 652 338 324 132 36 chr3 8830240 8830573 -150769210 + Charlie13a DNA Charlie 1027 1391 -123 5 652 295 317 111 32 chr3 8831541 8831730 -150768053 + Lx8 LINE L1 6760 6963 -510 5 652 628 60 12 0 chr3 8831721 8831805 -150767978 + L1_Mus2 LINE L1 5713 5797 -839 6 652 39302 7 0 1 chr3 8831806 8837803 -150761980 + L1Md_A LINE L1 1 5586 -297 6 652 9198 3 0 0 chr3 8837803 8838799 -150760984 + L1Md_A LINE L1 5587 6582 0 6 652 5718 92 5 3 chr3 8838812 8839593 -150760190 + L1_Mus2 LINE L1 5784 6566 0 6 652 425 337 98 4 chr3 8839640 8839914 -150759869 + Lx8 LINE L1 6987 7286 -187 5 652 615 175 42 10 chr3 8839944 8840238 -150759545 + (CA)n Simple_repeat Simple_repeat 1 303 0 6 652 529 286 15 8 chr3 8840574 8840708 -150759075 + Lx8 LINE L1 7198 7332 -141 6 652 1482 68 16 5 chr3 8840893 8841084 -150758699 + B2_Mm2 SINE B2 1 193 -2 6 652 363 332 68 27 chr3 8841332 8841654 -150758129 - MTEb LTR MaLR 0 379 24 6 652 197 108 0 26 chr3 8841709 8841747 -150758036 + (TG)n Simple_repeat Simple_repeat 1 37 0 6 652 859 245 16 53 chr3 8841808 8842054 -150757729 - B4A SINE B4 -51 241 5 6 652 317 242 0 0 chr3 8842224 8842290 -150757493 - MLT1G1 LTR MaLR -13 566 501 6 652 261 301 138 11 chr3 8842314 8842408 -150757375 - MLT1G1 LTR MaLR -194 354 249 6 652 4231 83 45 2 chr3 8843147 8843740 -150756043 - Lx LINE L1 -12 6642 6024 6 652 262 105 0 0 chr3 8843740 8843778 -150756005 - Lx2B LINE L1 -630 6370 6333 6 652 3147 90 5 2 chr3 8843774 8844208 -150755575 - L1_Mm LINE L1 -320 5563 5129 6 652 5654 44 0 4 chr3 8844220 8844901 -150754882 + L1_Mus2 LINE L1 5587 6264 -302 6 652 4064 103 38 0 chr3 8844898 8845545 -150754238 + Lx2 LINE L1 5522 6191 -806 6 652 611 42 0 0 chr3 8846238 8846310 -150753473 - MERVL-int LTR ERVL -2892 2593 2522 6 652 720 254 116 0 chr3 8846496 8846685 -150753098 - ID_B1 SINE B4 0 224 14 6 652 2889 248 138 55 chr3 8847296 8848415 -150751368 + Lx8 LINE L1 6174 7386 -87 6 652 1318 201 78 32 chr3 8848613 8848800 -150750983 - ORR1C2 LTR MaLR 0 384 182 6 652 420 20 0 0 chr3 8848800 8848849 -150750934 + (CAGAGA)n Simple_repeat Simple_repeat 4 52 0 6 652 1318 201 78 32 chr3 8848849 8849005 -150750778 - ORR1C2 LTR MaLR -203 181 25 6 652 230 369 12 12 chr3 8849168 8849253 -150750530 + PB1D10 SINE Alu 1 85 -32 6 652 229 276 138 0 chr3 8849633 8849720 -150750063 + PB1D9 SINE Alu 22 120 0 6 652 875 267 128 7 chr3 8851802 8852107 -150747676 + MLT2C1 LTR ERVL 1 342 -55 6 652 1183 63 6 0 chr3 8852602 8852761 -150747022 - L1_Mus1 LINE L1 0 6567 6408 6 652 237 318 45 38 chr3 8852827 8852984 -150746799 + L1MEf LINE L1 2053 2210 -3990 6 652 7184 152 49 8 chr3 8853184 8854639 -150745144 + Lx2B LINE L1 5474 6992 -8 6 652 614 265 114 70 chr3 8854856 8855225 -150744558 - Lx8 LINE L1 -238 7235 6851 6 652 1674 174 74 18 chr3 8855226 8855565 -150744218 - ORR1B2 LTR MaLR 0 367 10 6 652 347 337 33 28 chr3 8855569 8855749 -150744034 - Lx8 LINE L1 -612 6861 6681 6 652 1537 286 100 40 chr3 8855908 8856747 -150743036 - Lx8 LINE L1 -993 6480 5592 6 652 1608 230 87 68 chr3 8856767 8857219 -150742564 + RLTR31A_Mm LTR ERVK 1 434 -150 6 652 450 0 0 0 chr3 8857219 8857269 -150742514 + (CGGGG)n Simple_repeat Simple_repeat 5 54 0 6 652 1608 230 87 68 chr3 8857269 8857389 -150742394 + RLTR31A_Mm LTR ERVK 435 584 0 6 652 2983 265 44 135 chr3 8857430 8857886 -150741897 - Lx8 LINE L1 -1106 4774 4348 6 652 510 180 0 0 chr3 8857886 8857975 -150741808 - RMER13A LTR ERVK -771 89 1 6 652 2983 265 44 135 chr3 8857975 8858167 -150741616 - Lx8 LINE L1 -1106 4347 4166 6 652 1096 239 46 92 chr3 8858167 8858559 -150741224 + MTE2a LTR MaLR 3 376 -3 6 652 2983 265 44 135 chr3 8858559 8858714 -150741069 - Lx8 LINE L1 -1715 4165 4012 6 652 234 0 0 0 chr3 8858714 8858740 -150741043 + (TTG)n Simple_repeat Simple_repeat 2 27 0 6 652 2983 265 44 135 chr3 8858740 8859060 -150740723 - Lx8 LINE L1 -1869 4011 3725 6 652 669 232 156 5 chr3 8859060 8859246 -150740537 - B3 SINE B2 -1 215 2 6 652 2983 265 44 135 chr3 8859246 8859719 -150740064 - Lx8 LINE L1 -2156 3724 3242 6 652 570 276 136 4 chr3 8859694 8859967 -150739816 - L1M2 LINE L1 -2974 3169 2861 6 652 1078 288 181 36 chr3 8859975 8861100 -150738683 + L1_Mur3 LINE L1 1326 2613 -3267 6 652 1455 199 98 52 chr3 8861448 8861814 -150737969 + ORR1C2 LTR MaLR 1 383 -1 6 652 847 164 14 14 chr3 8862232 8862380 -150737403 + B1_Mur3 SINE Alu 2 149 0 6 652 23 78 0 0 chr3 8862446 8862497 -150737286 + AT_rich Low_complexity Low_complexity 1 51 0 6 652 651 112 0 0 chr3 8863771 8863869 -150735914 + (GGGA)n Simple_repeat Simple_repeat 4 101 0 6 652 185 214 30 10 chr3 8866782 8866881 -150732902 + C-rich Low_complexity Low_complexity 3 103 0 6 652 1161 58 0 0 chr3 8867477 8867615 -150732168 - B1_Mus2 SINE Alu -8 139 2 6 652 291 306 75 31 chr3 8867645 8867942 -150731841 - L1MA4 LINE L1 -30 6270 5961 6 652 265 303 46 0 chr3 8867958 8868067 -150731716 + MIR SINE MIR 140 253 -9 6 652 341 293 130 60 chr3 8868372 8868572 -150731211 - B4A SINE B4 0 292 79 6 652 215 327 0 0 chr3 8868560 8868615 -150731168 - RSINE1 SINE B4 -107 58 4 6 652 271 321 44 18 chr3 8869613 8869727 -150730056 - B1F2 SINE Alu -30 119 3 6 652 7378 43 0 0 chr3 8869830 8870706 -150729077 + L1Md_F2 LINE L1 5706 6581 -1 6 652 1266 222 14 24 chr3 8871297 8871353 -150728430 - MTD LTR MaLR -41 378 322 6 652 2130 173 8 14 chr3 8871353 8871722 -150728061 + ORR1B2 LTR MaLR 1 367 0 6 652 1266 222 14 24 chr3 8871722 8871960 -150727823 - MTD LTR MaLR -98 321 88 6 652 537 293 81 14 chr3 8872233 8872444 -150727339 + B4A SINE B4 1 225 -67 6 652 211 157 39 0 chr3 8872444 8872495 -150727288 + (TAA)n Simple_repeat Simple_repeat 1 53 0 6 652 291 114 0 0 chr3 8872585 8872629 -150727154 + (TCCC)n Simple_repeat Simple_repeat 2 45 0 6 652 612 59 0 0 chr3 8872629 8872714 -150727069 + (TG)n Simple_repeat Simple_repeat 1 85 0 6 652 366 271 86 0 chr3 8872975 8873115 -150726668 + ID_B1 SINE B4 2 153 -71 6 652 239 203 152 0 chr3 8873131 8873190 -150726593 + RSINE1 SINE B4 27 94 -71 6 652 5440 43 39 1 chr3 8874440 8875115 -150724668 - L1_Mus2 LINE L1 0 6566 5867 6 652 400 268 68 40 chr3 8875439 8875634 -150724149 - L1MB8 LINE L1 -266 5912 5712 6 652 338 202 100 67 chr3 8875981 8876071 -150723712 - B1_Mus2 SINE Alu -51 96 4 6 652 220 299 25 25 chr3 8876137 8876216 -150723567 + RSINE1 SINE B4 54 132 -33 6 652 4221 230 92 31 chr3 8876371 8877630 -150722153 + Lx9 LINE L1 6307 7642 -2 6 652 21 0 0 0 chr3 8877829 8877850 -150721933 + AT_rich Low_complexity Low_complexity 1 21 0 6 652 10256 137 32 22 chr3 8878069 8879475 -150720308 + Lx LINE L1 2783 4217 -1669 6 652 5848 57 27 5 chr3 8879475 8880228 -150719555 + L1Md_F2 LINE L1 5813 6581 -1 6 652 10256 137 32 22 chr3 8880228 8880686 -150719097 + Lx LINE L1 4218 4666 -1220 6 652 198 0 0 0 chr3 8880926 8880948 -150718835 + (T)n Simple_repeat Simple_repeat 1 22 0 6 652 1389 50 0 0 chr3 8881779 8881999 -150717784 + (GAAA)n Simple_repeat Simple_repeat 1 220 0 6 652 234 231 0 0 chr3 8882343 8882408 -150717375 + CT-rich Low_complexity Low_complexity 2 66 0 6 652 7947 116 17 5 chr3 8882741 8884674 -150715109 + Lx LINE L1 4649 6605 -49 6 652 229 269 99 63 chr3 8885092 8885203 -150714580 + B3A SINE B2 4 118 -98 6 652 372 149 122 0 chr3 8885267 8885341 -150714442 - B3 SINE B2 -11 205 123 6 652 404 321 0 0 chr3 8886579 8886716 -150713067 - L1M2 LINE L1 -846 5454 5318 6 652 261 0 0 0 chr3 8888385 8888414 -150711369 + (CA)n Simple_repeat Simple_repeat 2 30 0 6 652 778 191 0 0 chr3 8889487 8889623 -150710160 + B1_Mus1 SINE Alu 5 140 -8 6 652 2378 82 53 0 chr3 8889725 8890065 -150709718 - Lx2 LINE L1 0 6997 6640 6 652 325 318 145 0 chr3 8890515 8890694 -150709089 + MLT1F1 LTR MaLR 363 567 -2 6 652 1239 41 0 0 chr3 8890794 8890941 -150708842 + B1_Mus2 SINE Alu 1 147 0 6 652 263 192 37 75 chr3 8893059 8893166 -150706617 + CYRA11_Mm Unknown Y-chromosome 192 294 -323 6 652 876 141 19 124 chr3 8893084 8893294 -150706489 - URR1B DNA MER1_type -37 188 1 6 652 419 295 125 25 chr3 8893680 8893920 -150705863 + Tigger15a DNA TcMar 1 264 -451 6 652 432 299 22 0 chr3 8894384 8894521 -150705262 - MLT1A0 LTR MaLR 0 365 226 6 652 995 130 0 5 chr3 8895299 8895517 -150704266 + (TG)n Simple_repeat Simple_repeat 1 216 0 6 652 447 272 16 22 chr3 8895755 8895871 -150703912 + B1F SINE Alu 3 127 -20 6 652 430 209 8 120 chr3 8896095 8896220 -150703563 + PB1D7 SINE Alu 4 114 -6 6 652 211 196 0 0 chr3 8896484 8896530 -150703253 + ID2 SINE ID 2 47 -36 6 652 7328 119 6 14 chr3 8896926 8898459 -150701324 + Lx LINE L1 5129 6654 0 6 652 24 53 0 0 chr3 8898584 8898622 -150701161 + AT_rich Low_complexity Low_complexity 1 38 0 6 652 229 250 0 86 chr3 8898682 8898752 -150701031 + B4A SINE B4 82 145 -147 6 652 271 315 0 36 chr3 8898693 8898805 -150700978 + PB1D7 SINE Alu 6 113 -7 6 652 246 274 24 12 chr3 8899293 8899378 -150700405 + Lx8 LINE L1 7387 7472 -1 6 652 261 0 0 0 chr3 8899565 8899594 -150700189 + (TTCA)n Simple_repeat Simple_repeat 3 31 0 6 652 580 142 142 0 chr3 8899603 8899723 -150700060 - B1_Mus1 SINE Alu -11 137 1 6 652 780 259 27 36 chr3 8899723 8899935 -150699848 - B4 SINE B4 -70 222 13 6 652 1231 41 0 0 chr3 8900829 8900976 -150698807 + B1_Mm SINE Alu 1 147 0 6 652 3384 30 8 0 chr3 8901558 8901951 -150697832 + MTA_Mm LTR MaLR 1 396 0 6 652 885 194 115 34 chr3 8902156 8902364 -150697419 - URR1B DNA MER1_type 0 225 1 6 652 288 0 0 0 chr3 8902912 8902944 -150696839 + (CA)n Simple_repeat Simple_repeat 1 32 0 6 652 379 343 0 21 chr3 8903578 8903718 -150696065 + B1F SINE Alu 8 144 -5 6 652 436 305 119 59 chr3 8903920 8904206 -150695577 + ORR1E LTR MaLR 57 359 0 6 652 1509 163 6 89 chr3 8904730 8905080 -150694703 - ORR1A4 LTR MaLR -8 321 1 6 652 7243 136 70 61 chr3 8905080 8906642 -150693141 - ORR1A4-int LTR MaLR 0 1963 388 6 652 36625 36 2 2 chr3 8906642 8911597 -150688186 + L1Md_F2 LINE L1 631 5585 -298 6 652 8335 39 2 3 chr3 8911598 8912595 -150687188 + L1Md_F2 LINE L1 5587 6582 0 6 81 2248 131 28 3 chr3 8912613 8913004 -150686779 - ORR1A4-int LTR MaLR -1562 401 1 6 653 1196 77 138 0 chr3 8913004 8913185 -150686598 - ORR1A4 LTR MaLR 0 327 122 6 653 503 239 60 26 chr3 8913342 8913458 -150686325 - ID_B1 SINE B4 -5 219 100 6 653 369 291 99 30 chr3 8913458 8913471 -150686312 - B1F1 SINE Alu -3 144 7 6 653 371 336 0 30 chr3 8913807 8913939 -150685844 + ERVL-int LTR ERVL 4177 4304 -1453 7 653 261 0 0 0 chr3 8913989 8914018 -150685765 + (A)n Simple_repeat Simple_repeat 1 29 0 7 653 241 280 74 74 chr3 8914063 8914171 -150685612 - L1MD LINE L1 -547 5812 5705 7 653 1255 103 38 0 chr3 8914756 8914941 -150684842 + B2_Mm1a SINE B2 1 192 -1 7 653 1134 95 0 0 chr3 8915257 8915405 -150684378 + B1_Mus1 SINE Alu 1 148 0 7 653 371 167 121 2 chr3 8915559 8915646 -150684137 + B3A SINE B2 2 96 -99 7 653 750 52 47 55 chr3 8915683 8916078 -150683705 + (GTTTG)n Simple_repeat Simple_repeat 1 391 0 7 653 550 200 176 0 chr3 8916080 8916205 -150683578 - B1_Mur2 SINE Alu -2 147 1 7 653 180 0 0 0 chr3 8916481 8916501 -150683282 + (A)n Simple_repeat Simple_repeat 1 20 0 7 653 243 250 15 15 chr3 8917684 8917749 -150682034 + ID4 SINE ID 15 79 -4 7 653 22 56 0 0 chr3 8917991 8918027 -150681756 + AT_rich Low_complexity Low_complexity 1 36 0 7 653 424 226 200 15 chr3 8918276 8918411 -150681372 + B3 SINE B2 4 163 -53 7 653 318 79 48 0 chr3 8918579 8918642 -150681141 + (TA)n Simple_repeat Simple_repeat 1 66 0 7 653 1215 241 70 31 chr3 8919104 8919463 -150680320 + MTEa LTR MaLR 3 375 -4 7 653 267 293 0 0 chr3 8919810 8919868 -150679915 - RSINE1 SINE B4 -19 146 89 7 653 1386 98 10 0 chr3 8920413 8920606 -150679177 + B2_Mm2 SINE B2 1 195 0 7 653 4328 202 120 21 chr3 8921153 8922676 -150677107 + Lx6 LINE L1 5513 7278 -182 7 653 453 254 24 32 chr3 8924545 8924671 -150675112 - ID_B1 SINE B4 -16 208 84 7 653 248 167 24 0 chr3 8925130 8925172 -150674611 + ID4_ SINE ID 28 70 -13 7 653 666 239 0 0 chr3 8925397 8925535 -150674248 + B1_Mur4 SINE Alu 5 142 -8 7 653 216 160 60 0 chr3 8925542 8925592 -150674191 + GA-rich Low_complexity Low_complexity 3 55 0 7 653 1295 276 135 15 chr3 8925608 8926490 -150673293 + Lx8 LINE L1 6200 7187 -286 7 653 511 264 36 0 chr3 8926720 8926860 -150672923 + ID_B1 SINE B4 80 224 0 7 653 228 135 0 0 chr3 8926860 8926897 -150672886 + (TGAA)n Simple_repeat Simple_repeat 4 40 0 7 653 313 159 95 0 chr3 8927622 8927685 -150672098 - B4 SINE B4 -222 70 2 7 653 352 112 99 12 chr3 8927942 8928023 -150671760 + Lx2 LINE L1 6910 6997 0 7 653 321 260 101 101 chr3 8928185 8928373 -150671410 + B3A SINE B2 5 192 -6 7 653 237 65 0 0 chr3 8928480 8928511 -150671272 + (TGGA)n Simple_repeat Simple_repeat 1 31 0 7 653 1656 171 254 3 chr3 8932770 8933104 -150666679 + MTC LTR MaLR 4 421 0 7 653 252 59 0 0 chr3 8933912 8933946 -150665837 + (TTTTG)n Simple_repeat Simple_repeat 1 34 0 7 653 1108 82 0 20 chr3 8933947 8934097 -150665686 - B1_Mus1 SINE Alu -1 147 1 7 653 455 219 17 17 chr3 8934140 8934256 -150665527 - PB1D7 SINE Alu -2 118 3 7 653 24 32 0 0 chr3 8934405 8934436 -150665347 + AT_rich Low_complexity Low_complexity 1 31 0 7 653 362 357 26 0 chr3 8935656 8935810 -150663973 + MER5A DNA MER1_type 24 181 -8 7 653 1119 88 0 0 chr3 8936085 8936232 -150663551 + B1_Mus1 SINE Alu 1 147 -1 7 653 264 30 0 0 chr3 8936373 8936406 -150663377 + (A)n Simple_repeat Simple_repeat 1 33 0 7 653 243 0 0 0 chr3 8936897 8936924 -150662859 + (CA)n Simple_repeat Simple_repeat 2 28 0 7 653 189 0 0 0 chr3 8937381 8937402 -150662381 + (T)n Simple_repeat Simple_repeat 1 21 0 7 653 1272 34 0 0 chr3 8937402 8937549 -150662234 - B1_Mus2 SINE Alu 0 147 1 7 653 253 96 0 71 chr3 8939971 8940027 -150659756 + C-rich Low_complexity Low_complexity 2 53 0 7 653 180 77 0 0 chr3 8940311 8940337 -150659446 + (CA)n Simple_repeat Simple_repeat 2 27 0 7 653 202 220 0 63 chr3 8940726 8940789 -150658994 + CT-rich Low_complexity Low_complexity 4 62 0 7 653 469 246 171 38 chr3 8941246 8941457 -150658326 + Lx8 LINE L1 6964 7202 -271 7 653 1004 219 33 15 chr3 8941460 8941707 -150658076 + RMER1B Other Other 129 456 -610 7 653 263 0 85 0 chr3 8941737 8941784 -150657999 + (CCA)n Simple_repeat Simple_repeat 3 53 0 7 653 991 40 11 39 chr3 8941786 8941966 -150657817 + (CACAC)n Simple_repeat Simple_repeat 3 177 0 7 653 2567 176 67 2 chr3 8942266 8942745 -150657038 + RMER1B Other Other 544 1053 -13 7 653 243 0 0 0 chr3 8942749 8942776 -150657007 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 7 653 822 259 128 16 chr3 8945009 8945252 -150654531 + B4 SINE B4 1 270 -22 7 653 198 107 35 18 chr3 8945835 8945892 -150653891 + T-rich Low_complexity Low_complexity 3 60 0 7 653 263 228 35 0 chr3 8946011 8946068 -150653715 + ID4 SINE ID 15 73 -10 7 653 235 320 13 0 chr3 8946530 8946608 -150653175 - Tigger7 DNA MER2_type -25 2466 2388 7 653 650 255 108 38 chr3 8946602 8946637 -150653146 - Tigger7 DNA MER2_type -2236 255 227 7 653 1738 186 75 28 chr3 8946637 8946996 -150652787 + ORR1C1 LTR MaLR 1 376 -2 7 653 650 255 108 38 chr3 8946996 8947172 -150652611 - Tigger7 DNA MER2_type -2265 226 29 7 653 254 95 0 23 chr3 8947176 8947219 -150652564 + (GGA)n Simple_repeat Simple_repeat 2 43 0 7 653 626 160 9 19 chr3 8947740 8947848 -150651935 - B1_Mur1 SINE Alu -1 148 42 7 653 334 189 0 76 chr3 8947851 8948279 -150651504 + CT-rich Low_complexity Low_complexity 1 395 0 7 653 183 42 0 0 chr3 8948669 8948693 -150651090 + (ATATG)n Simple_repeat Simple_repeat 5 28 0 7 653 284 217 29 14 chr3 8948982 8949052 -150650731 + C-rich Low_complexity Low_complexity 3 73 0 7 653 222 37 0 0 chr3 8949207 8949234 -150650549 + (GGGA)n Simple_repeat Simple_repeat 3 29 0 7 653 325 313 61 48 chr3 8949772 8949885 -150649898 + L1MB5 LINE L1 4848 4957 -1189 7 653 270 0 0 0 chr3 8949885 8949915 -150649868 + (CA)n Simple_repeat Simple_repeat 2 31 0 7 653 325 313 61 48 chr3 8949915 8950113 -150649670 + L1MB5 LINE L1 4958 5162 -984 7 653 380 269 84 24 chr3 8950201 8950517 -150649266 + L1MB5 LINE L1 5152 5492 -692 7 653 236 191 104 60 chr3 8950618 8950685 -150649098 + RMER15 LTR ERVL 3 72 -503 7 653 791 243 42 28 chr3 8950713 8950925 -150648858 + RMER15 LTR ERVL 27 241 -334 7 653 4981 50 2 2 chr3 8950934 8951521 -150648262 - LTRIS_Mus LTR ERV1 0 587 1 7 653 2016 229 88 39 chr3 8951521 8951827 -150647956 + RMER1C Other Other 618 934 -408 7 653 804 204 70 154 chr3 8951827 8952256 -150647527 + RLTR9C LTR ERVK 1 393 0 7 653 2016 229 88 39 chr3 8952256 8952631 -150647152 + RMER1C Other Other 935 1333 -9 7 653 293 208 19 0 chr3 8952680 8952733 -150647050 + RSINE1 SINE B4 84 137 -28 7 653 1124 109 6 0 chr3 8952733 8952908 -150646875 + (CA)n Simple_repeat Simple_repeat 1 176 0 7 653 313 270 94 81 chr3 8952908 8953057 -150646726 + L1MB5 LINE L1 5814 5964 -210 7 653 438 264 50 0 chr3 8954120 8954241 -150645542 + ID_B1 SINE B4 97 223 -1 7 653 388 228 147 17 chr3 8954477 8954570 -150645213 + PB1D10 SINE Alu 16 124 -25 7 653 1440 34 83 11 chr3 8954570 8954590 -150645193 - B2_Mm1a SINE B2 0 193 160 7 653 324 0 0 0 chr3 8954590 8954626 -150645157 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 7 653 1440 34 83 11 chr3 8954626 8954785 -150644998 - B2_Mm1a SINE B2 -34 159 1 7 653 364 228 147 17 chr3 8954785 8954807 -150644976 + B1F1 SINE Alu 125 146 -3 7 653 629 263 94 37 chr3 8954986 8955321 -150644462 + ORR1E LTR MaLR 1 379 0 7 653 679 147 43 8 chr3 8955372 8955489 -150644294 - B1_Mur2 SINE Alu -19 130 10 7 653 562 272 85 47 chr3 8955495 8955730 -150644053 + MER96B DNA hAT 151 394 -23 7 653 1517 196 142 42 chr3 8956264 8956673 -150643110 + ORR1D1-int LTR MaLR 921 1370 0 7 653 1408 203 102 51 chr3 8956674 8957027 -150642756 + ORR1D1 LTR MaLR 2 372 -2 7 653 682 228 43 27 chr3 8958524 8958709 -150641074 + MER31A LTR ERV1 1 188 -297 7 653 351 125 0 0 chr3 8959849 8959921 -150639862 + (CA)n Simple_repeat Simple_repeat 2 73 0 7 653 1656 26 11 0 chr3 8960259 8960449 -150639334 + B2_Mm1t SINE B2 2 193 0 7 653 1270 93 6 6 chr3 8960467 8960640 -150639143 + B2_Mm1t SINE B2 3 175 -18 7 653 387 88 350 10 chr3 8960699 8960802 -150638981 + B2_Mm2 SINE B2 58 195 0 7 653 414 177 12 12 chr3 8961006 8961086 -150638697 - ID4_ SINE ID 0 83 4 7 653 215 194 0 0 chr3 8961662 8961698 -150638085 + (CGA)n Simple_repeat Simple_repeat 2 37 0 7 653 957 156 0 0 chr3 8962141 8962282 -150637501 + B1_Mus1 SINE Alu 2 142 -6 7 653 900 136 11 22 chr3 8962284 8962465 -150637318 + GA-rich Low_complexity Low_complexity 2 180 0 7 653 465 257 62 0 chr3 8965034 8965147 -150634636 + PB1D7 SINE Alu 1 120 0 7 653 535 270 80 11 chr3 8965202 8965378 -150634405 - B3A SINE B2 -10 188 1 7 653 211 341 49 0 chr3 8965644 8965726 -150634057 + B4 SINE B4 79 164 -128 7 653 338 227 158 14 chr3 8965654 8965755 -150634028 + B1F SINE Alu 6 118 -2 7 653 3048 37 21 8 chr3 8966778 8967161 -150632622 + MTA_Mm LTR MaLR 1 388 -8 7 653 306 0 0 0 chr3 8967939 8967973 -150631810 + (TTG)n Simple_repeat Simple_repeat 3 36 0 7 653 311 269 21 0 chr3 8967973 8968066 -150631717 - PB1D10 SINE Alu -12 105 11 7 653 459 220 281 37 chr3 8968366 8968540 -150631243 - B3A SINE B2 0 216 1 7 653 918 162 156 5 chr3 8968592 8968778 -150631005 - B3 SINE B2 -1 215 2 7 653 328 317 32 58 chr3 8969307 8969323 -150630460 + ID_B1 SINE B4 70 219 -5 7 653 368 299 58 29 chr3 8969323 8969461 -150630322 + B1F2 SINE Alu 3 144 -5 7 653 339 260 26 0 chr3 8969463 8969540 -150630243 + ID4 SINE ID 4 82 -1 7 653 294 95 0 0 chr3 8969545 8969587 -150630196 + (CAGG)n Simple_repeat Simple_repeat 2 43 0 7 653 477 0 0 0 chr3 8970041 8970094 -150629689 + (GA)n Simple_repeat Simple_repeat 1 53 0 7 653 289 289 133 7 chr3 8970867 8971010 -150628773 + ID_B1 SINE B4 64 224 0 7 653 498 248 62 34 chr3 8971381 8971527 -150628256 + RSINE1 SINE B4 1 150 -15 7 653 351 0 0 0 chr3 8971534 8971573 -150628210 + (CA)n Simple_repeat Simple_repeat 1 39 0 7 653 344 265 24 12 chr3 8971690 8971774 -150628009 + MLT1J1 LTR MaLR 26 110 -334 8 653 328 194 30 0 chr3 8971813 8971880 -150627903 + MLT1J1 LTR MaLR 82 150 -362 8 653 271 296 115 39 chr3 8971866 8971996 -150627787 + MLT1J1 LTR MaLR 78 217 -295 8 653 690 224 0 15 chr3 8972170 8972306 -150627477 + B1_Mur2 SINE Alu 3 136 -13 8 653 282 169 0 46 chr3 8972308 8972395 -150627388 + GA-rich Low_complexity Low_complexity 2 84 0 8 653 307 284 140 69 chr3 8972599 8972790 -150626993 + L1MC2 LINE L1 5743 5961 -372 8 653 1165 81 0 0 chr3 8972790 8972938 -150626845 + B1_Mus1 SINE Alu 1 148 0 8 653 307 280 137 66 chr3 8972938 8973052 -150626731 + L1MC2 LINE L1 5962 6072 -272 8 653 242 190 102 17 chr3 8973058 8973117 -150626666 + ORR1D1 LTR MaLR 8 71 -303 8 653 237 136 0 64 chr3 8973441 8973488 -150626295 + LTR48B LTR ERV1 41 84 -560 8 653 259 189 22 22 chr3 8973587 8973679 -150626104 + (TTGG)n Simple_repeat Simple_repeat 4 95 0 8 653 1167 138 105 0 chr3 8974042 8974252 -150625531 + MTC LTR MaLR 1 232 -189 8 653 880 271 19 0 chr3 8974344 8974554 -150625229 + ID_B1 SINE B4 2 215 -9 8 653 362 271 24 126 chr3 8974606 8974788 -150624995 + ID_B1 SINE B4 47 203 -21 8 653 326 254 82 33 chr3 8975254 8975376 -150624407 + MLT1A1 LTR MaLR 1 128 -280 8 653 211 267 117 0 chr3 8975776 8975836 -150623947 + B1F SINE Alu 10 76 -73 8 653 366 228 167 33 chr3 8976281 8976420 -150623363 + B4 SINE B4 73 231 -61 8 653 592 254 0 30 chr3 8976420 8976554 -150623229 + B3 SINE B2 1 130 -86 8 653 1089 185 9 24 chr3 8976575 8976785 -150622998 - URR1B DNA MER1_type -18 207 1 8 653 332 185 0 15 chr3 8976785 8976846 -150622937 + B1F1 SINE Alu 90 149 0 8 653 1548 48 11 5 chr3 8977045 8977235 -150622548 - B2_Mm2 SINE B2 -3 192 2 8 653 988 106 35 0 chr3 8977239 8977381 -150622402 - B1_Mus2 SINE Alu 0 147 1 8 653 249 146 0 0 chr3 8978307 8978355 -150621428 + (CGGGGG)n Simple_repeat Simple_repeat 1 48 0 8 653 204 40 0 0 chr3 8978432 8978457 -150621326 + (CTATT)n Simple_repeat Simple_repeat 3 27 0 8 653 1213 55 0 0 chr3 8979145 8979291 -150620492 + B1_Mm SINE Alu 2 147 0 8 653 264 59 0 0 chr3 8979291 8979325 -150620458 + (A)n Simple_repeat Simple_repeat 1 34 0 8 653 662 61 0 0 chr3 8979614 8979696 -150620087 - B2_Mm2 SINE B2 -113 82 1 8 653 824 225 121 37 chr3 8979696 8979968 -150619815 + RMER1C Other Other 1026 1320 -22 8 653 1282 195 136 25 chr3 8979970 8980301 -150619482 - ORR1D1 LTR MaLR -10 368 1 8 653 247 196 0 0 chr3 8980301 8980347 -150619436 + ORR1D2 LTR MaLR 325 370 0 8 653 259 400 0 31 chr3 8980524 8980582 -150619201 + PB1 SINE Alu 2 56 -71 8 653 236 213 63 32 chr3 8980582 8980645 -150619138 + MTD LTR MaLR 1 65 -342 8 653 23 33 0 0 chr3 8980659 8980689 -150619094 + AT_rich Low_complexity Low_complexity 1 30 0 8 653 1293 27 0 0 chr3 8980689 8980836 -150618947 - B1_Mus2 SINE Alu 0 147 1 8 653 535 145 250 25 chr3 8980841 8980961 -150618822 - B1_Mur4 SINE Alu -3 147 1 8 653 1412 186 153 12 chr3 8980961 8981287 -150618496 + MTD LTR MaLR 48 419 0 8 653 617 231 0 109 chr3 8982250 8982415 -150617368 - B3 SINE B2 0 216 70 8 653 224 216 0 39 chr3 8983050 8983127 -150616656 + C-rich Low_complexity Low_complexity 4 77 0 8 653 437 219 37 0 chr3 8983485 8983567 -150616216 + PB1D7 SINE Alu 13 97 -23 8 653 327 65 0 0 chr3 8983681 8983727 -150616056 + (CA)n Simple_repeat Simple_repeat 2 47 0 8 653 252 0 0 0 chr3 8983980 8984008 -150615775 + (CA)n Simple_repeat Simple_repeat 1 28 0 8 653 1037 194 23 37 chr3 8984209 8984423 -150615360 + B3 SINE B2 1 211 -5 8 653 460 257 78 59 chr3 8984433 8984652 -150615131 + ID_B1 SINE B4 2 224 0 8 653 205 322 144 0 chr3 8984712 8984802 -150614981 + MER5A DNA MER1_type 11 113 -76 8 653 885 59 52 16 chr3 8986176 8986495 -150613288 + (CA)n Simple_repeat Simple_repeat 1 330 0 8 653 436 182 159 0 chr3 8986569 8986657 -150613126 - ID_B1 SINE B4 -121 103 2 8 653 294 307 88 0 chr3 8987182 8987296 -150612487 + MER57-int LTR ERV1 7150 7273 -264 8 653 793 236 249 22 chr3 8987725 8987998 -150611785 + MTD LTR MaLR 18 352 -67 8 653 665 201 67 7 chr3 8987999 8988134 -150611649 + B1_Mur2 SINE Alu 2 144 -5 8 653 285 128 0 0 chr3 8988173 8988220 -150611563 + (GA)n Simple_repeat Simple_repeat 1 47 0 8 653 1399 60 43 21 chr3 8988374 8988562 -150611221 + B2_Mm1a SINE B2 2 193 0 8 653 438 267 246 46 chr3 8988950 8989256 -150610527 + ORR1E LTR MaLR 2 368 -2 8 653 62 96 0 0 chr3 8989259 8989447 -150610336 + AT_rich Low_complexity Low_complexity 1 188 0 8 653 314 320 0 0 chr3 8989575 8989653 -150610130 + ID_B1 SINE B4 127 204 -20 8 653 696 244 28 120 chr3 8990004 8990321 -150609462 + B4 SINE B4 2 289 -3 8 653 1165 96 0 0 chr3 8991336 8991482 -150608301 + B1_Mus2 SINE Alu 2 147 0 8 653 237 159 0 0 chr3 8991921 8991965 -150607818 + (CGAG)n Simple_repeat Simple_repeat 2 45 0 8 653 321 301 176 64 chr3 8992818 8993055 -150606728 + MLT1F1 LTR MaLR 1 304 -291 8 653 567 287 7 14 chr3 8994001 8994139 -150605644 + B4 SINE B4 142 278 -14 8 653 387 60 0 0 chr3 8994143 8994193 -150605590 + (CA)n Simple_repeat Simple_repeat 1 50 0 8 653 277 288 25 12 chr3 8994214 8994295 -150605488 - MLT1A0 LTR MaLR -224 141 60 8 653 337 268 0 0 chr3 8995442 8995513 -150604270 + MER44D DNA MER2_type 20 90 -615 8 653 595 310 32 11 chr3 8995587 8995776 -150604007 + ID_B1 SINE B4 1 193 -31 8 653 7564 58 8 3 chr3 8996551 8997791 -150601992 - L1_Mus1 LINE L1 0 6567 5323 8 653 1008 103 21 0 chr3 8997847 8997992 -150601791 + B1_Mus1 SINE Alu 1 148 0 8 653 1220 91 34 0 chr3 8998005 8998180 -150601603 + B2_Mm2 SINE B2 1 181 -14 8 653 288 263 242 6 chr3 8998525 8998873 -150600910 + L1M4 LINE L1 5182 5604 -579 8 653 858 157 14 7 chr3 8998967 8999108 -150600675 - B1_Mur4 SINE Alu -7 143 2 8 653 263 236 14 14 chr3 8999123 8999196 -150600587 + L1M5 LINE L1 4961 5033 -1113 8 653 338 209 32 45 chr3 8999609 8999704 -150600079 - B1F1 SINE Alu 0 117 37 8 653 1435 136 14 9 chr3 8999778 9000000 -150599783 + RMER6A LTR ERVK 7 229 -527 8 653 2194 145 42 113 chr3 9000000 9000093 -150599690 + RMER6A LTR ERVK 230 322 -434 1 653 1289 27 0 0 chr3 9000093 9000240 -150599543 + B1_Mm SINE Alu 1 147 0 2 653 2194 145 42 113 chr3 9000240 9000713 -150599070 + RMER6A LTR ERVK 323 756 0 1 653 333 289 87 0 chr3 9000937 9001041 -150598742 + PB1D10 SINE Alu 4 116 -1 3 653 234 0 0 0 chr3 9001398 9001424 -150598359 + (A)n Simple_repeat Simple_repeat 1 26 0 4 653 246 105 0 0 chr3 9002384 9002422 -150597361 + (TAGA)n Simple_repeat Simple_repeat 3 40 0 5 653 22 99 0 0 chr3 9004483 9004554 -150595229 + GC_rich Low_complexity Low_complexity 1 71 0 6 653 303 250 62 12 chr3 9004840 9004921 -150594862 + RMER5 LTR ERV1 427 511 -23 7 653 261 0 0 0 chr3 9004966 9004995 -150594788 + (TG)n Simple_repeat Simple_repeat 2 30 0 8 653 2086 62 50 4 chr3 9005016 9005293 -150594490 + L1_Mus1 LINE L1 6278 6567 0 9 653 211 258 0 101 chr3 9005439 9005508 -150594275 + PB1D10 SINE Alu 56 117 0 1 653 182 222 0 18 chr3 9005736 9005791 -150593992 + GA-rich Low_complexity Low_complexity 2 55 0 1 653 296 316 8 58 chr3 9006031 9006152 -150593631 + PB1D10 SINE Alu 1 115 -2 1 653 346 220 0 0 chr3 9006152 9006211 -150593572 + ID SINE ID 1 59 -165 1 653 1859 135 29 6 chr3 9006233 9006547 -150593236 + ORR1A4 LTR MaLR 1 321 -8 1 653 354 138 0 0 chr3 9006820 9006878 -150592905 + (GGGA)n Simple_repeat Simple_repeat 2 59 0 1 653 418 247 57 62 chr3 9007324 9007518 -150592265 - MER53 DNA hAT 0 193 1 1 653 1018 65 0 7 chr3 9008162 9008302 -150591481 - B1_Mus2 SINE Alu 0 147 9 1 653 276 30 0 0 chr3 9008308 9008341 -150591442 + (CA)n Simple_repeat Simple_repeat 1 33 0 1 653 237 213 107 0 chr3 9008603 9008678 -150591105 - L1MB7 LINE L1 -2 6182 6100 1 653 334 239 193 17 chr3 9008914 9009033 -150590750 + ID_B1 SINE B4 78 217 -7 1 653 453 197 182 76 chr3 9009320 9009452 -150590331 + B1_Mus1 SINE Alu 2 147 -1 2 653 246 62 0 0 chr3 9009506 9009538 -150590245 + (TG)n Simple_repeat Simple_repeat 2 33 0 2 653 210 261 0 0 chr3 9009652 9009698 -150590085 + B4A SINE B4 81 126 -166 2 653 289 320 66 44 chr3 9009741 9009924 -150589859 + MLT1E2 LTR MaLR 177 363 -264 2 653 3039 136 49 9 chr3 9010357 9010892 -150588891 + RLTR1D LTR ERV1 37 592 -13 2 653 296 186 34 0 chr3 9010910 9010969 -150588814 + ID_B1 SINE B4 146 206 -18 2 653 6231 79 23 107 chr3 9011037 9011490 -150588293 + L1VL2 LINE L1 309 763 -2852 2 653 331 118 71 95 chr3 9011490 9011574 -150588209 + RLTR25B LTR ERVK 428 509 -519 2 653 844 45 0 0 chr3 9011505 9011617 -150588166 + B1_Mus2 SINE Alu 36 147 0 2 653 6231 79 23 107 chr3 9011617 9012267 -150587516 + L1VL2 LINE L1 764 1418 -2197 2 653 1003 56 16 0 chr3 9012267 9012393 -150587390 + B1_Mm SINE Alu 1 128 -19 2 653 306 0 0 0 chr3 9012393 9012427 -150587356 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 3 653 6231 75 15 18 chr3 9012427 9012821 -150586962 + L1VL2 LINE L1 1419 1809 -1806 2 653 351 0 0 0 chr3 9012821 9012860 -150586923 + (TC)n Simple_repeat Simple_repeat 2 40 0 3 653 1102 95 0 0 chr3 9012871 9013018 -150586765 - B1_Mm SINE Alu 0 147 1 3 653 317 292 0 0 chr3 9013181 9013270 -150586513 - PB1D10 SINE Alu -2 115 27 3 653 225 0 0 0 chr3 9013981 9014006 -150585777 + (TA)n Simple_repeat Simple_repeat 2 26 0 3 653 31 96 0 0 chr3 9014011 9014105 -150585678 + AT_rich Low_complexity Low_complexity 1 94 0 3 653 28 79 0 0 chr3 9014191 9014254 -150585529 + AT_rich Low_complexity Low_complexity 1 63 0 3 653 342 272 0 0 chr3 9014425 9014506 -150585277 + PB1D7 SINE Alu 40 120 0 3 653 1920 148 38 170 chr3 9014606 9015101 -150584682 - RLTR23 LTR ERV1 0 430 1 3 653 853 178 7 0 chr3 9015490 9015636 -150584147 + B1_Mur2 SINE Alu 2 148 -1 3 653 231 36 0 0 chr3 9016199 9016227 -150583556 + (TTG)n Simple_repeat Simple_repeat 2 29 0 4 653 495 324 112 27 chr3 9016338 9016703 -150583080 - LTR16A LTR ERVL -4 447 52 4 653 387 0 0 0 chr3 9017060 9017103 -150582680 + (TG)n Simple_repeat Simple_repeat 2 44 0 4 653 774 178 14 22 chr3 9017126 9017264 -150582519 - B1_Mur2 SINE Alu -10 139 3 4 653 192 77 0 0 chr3 9017280 9017306 -150582477 + (CTTG)n Simple_repeat Simple_repeat 2 27 0 4 653 1083 86 0 0 chr3 9017306 9017445 -150582338 - B1_Mus1 SINE Alu -9 139 1 4 653 590 164 17 0 chr3 9017973 9018089 -150581694 - B3 SINE B2 -10 206 89 4 653 2926 156 46 0 chr3 9018437 9018936 -150580847 + RLTR28 LTR ERVL 1 522 -2 4 653 302 250 0 138 chr3 9019114 9019244 -150580539 + MT2B LTR ERVL 146 257 -344 4 653 676 182 8 15 chr3 9019153 9019287 -150580496 + B1_Mur2 SINE Alu 15 147 -2 4 653 256 333 175 18 chr3 9019376 9019606 -150580177 + RMER15 LTR ERVL 296 561 -14 5 653 316 303 71 22 chr3 9019614 9019796 -150579987 + MER89-int LTR ERV1 530 720 -6081 5 653 431 291 16 16 chr3 9019984 9020113 -150579670 + MER89-int LTR ERV1 870 998 -5803 5 653 427 284 136 32 chr3 9020371 9020622 -150579161 + MER89-int LTR ERV1 3345 3621 -3180 5 653 1146 70 0 0 chr3 9020989 9021131 -150578652 + B1_Mus2 SINE Alu 1 142 -5 5 653 242 29 29 0 chr3 9021136 9021171 -150578612 + (CAAAAA)n Simple_repeat Simple_repeat 2 37 0 5 653 334 351 58 14 chr3 9021684 9021892 -150577891 + HERVL40-int LTR ERVL 3993 4209 -1321 5 653 215 103 26 0 chr3 9021892 9021931 -150577852 + (TTG)n Simple_repeat Simple_repeat 2 41 0 5 653 343 313 150 0 chr3 9022091 9022238 -150577545 + HERVL40-int LTR ERVL 4397 4565 -965 5 653 354 226 137 0 chr3 9022474 9022576 -150577207 + PB1D10 SINE Alu 1 116 -1 5 653 325 337 61 25 chr3 9022586 9022784 -150576999 + MER68-int LTR ERVL 2409 2613 -377 5 653 527 314 13 13 chr3 9023151 9023306 -150576477 + B4A SINE B4 2 156 -136 5 653 423 146 165 10 chr3 9023260 9023357 -150576426 + B1_Mur4 SINE Alu 27 138 -12 5 653 205 152 0 0 chr3 9023357 9023390 -150576393 + G-rich Low_complexity Low_complexity 1 33 0 6 653 198 0 0 0 chr3 9023908 9023930 -150575853 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 6 653 974 63 0 0 chr3 9023930 9024057 -150575726 - B1_Mm SINE Alu -2 145 19 6 653 201 175 0 0 chr3 9024132 9024172 -150575611 + (TA)n Simple_repeat Simple_repeat 2 41 0 6 653 426 20 0 0 chr3 9024744 9024795 -150574988 + (TATG)n Simple_repeat Simple_repeat 2 52 0 6 653 1101 88 0 26 chr3 9024795 9024935 -150574848 - B1_Mus1 SINE Alu -8 140 1 6 653 210 96 74 37 chr3 9024977 9025031 -150574752 + (TATAA)n Simple_repeat Simple_repeat 2 57 0 6 653 449 286 36 0 chr3 9025068 9025180 -150574603 + RSINE1 SINE B4 3 118 -47 6 653 411 21 0 0 chr3 9025228 9025276 -150574507 + (CA)n Simple_repeat Simple_repeat 2 49 0 6 653 195 42 0 0 chr3 9025278 9025302 -150574481 + (ATG)n Simple_repeat Simple_repeat 3 26 0 6 653 404 298 86 30 chr3 9025535 9025732 -150574051 - LTR40a LTR ERVL -230 289 82 7 653 474 267 71 25 chr3 9025768 9025964 -150573819 - HERVL40-int LTR ERVL -43 5487 5283 7 653 1098 60 0 0 chr3 9025992 9026126 -150573657 - B1_Mus1 SINE Alu -11 137 4 7 653 384 152 0 0 chr3 9026126 9026192 -150573591 + T-rich Low_complexity Low_complexity 1 66 0 7 653 195 129 0 0 chr3 9026436 9026467 -150573316 + (TATG)n Simple_repeat Simple_repeat 4 34 0 7 653 486 240 29 94 chr3 9026476 9026646 -150573137 - B4A SINE B4 0 292 134 7 653 249 33 0 0 chr3 9026747 9026777 -150573006 + (CA)n Simple_repeat Simple_repeat 1 30 0 7 653 336 299 10 30 chr3 9027312 9027412 -150572371 + PB1D7 SINE Alu 1 98 -22 7 653 393 22 0 0 chr3 9027417 9027463 -150572320 + (CA)n Simple_repeat Simple_repeat 1 46 0 7 653 799 197 101 0 chr3 9028889 9029067 -150570716 - URR1A DNA MER1_type -30 196 1 7 653 292 130 18 36 chr3 9029253 9029309 -150570474 + RLTR9E LTR ERVK 1 55 -313 8 653 371 228 77 24 chr3 9029388 9029558 -150570225 + RLTR9E LTR ERVK 208 385 -24 8 653 376 301 152 83 chr3 9029807 9029892 -150569891 - MLT1D LTR MaLR 0 505 415 8 653 1109 64 14 0 chr3 9029892 9030032 -150569751 + B1_Mus2 SINE Alu 2 143 -4 8 653 376 301 152 83 chr3 9030032 9030106 -150569677 - MLT1D LTR MaLR -91 414 350 8 653 1056 187 56 5 chr3 9030106 9030321 -150569462 - URR1A DNA MER1_type 0 226 1 8 653 376 301 152 83 chr3 9030321 9030555 -150569228 - MLT1D LTR MaLR -156 349 84 8 653 1672 210 71 32 chr3 9030783 9031199 -150568584 - RLTR28B LTR ERVL 0 481 48 8 653 1825 160 84 171 chr3 9031199 9031544 -150568239 - RLTR28 LTR ERVL -1 523 258 8 653 1161 68 0 0 chr3 9031544 9031691 -150568092 - B1_Mus1 SINE Alu 0 148 2 8 653 1825 160 84 171 chr3 9031691 9031918 -150567865 - RLTR28 LTR ERVL -267 257 1 8 653 1672 210 71 32 chr3 9031918 9031964 -150567819 - RLTR28B LTR ERVL -434 47 1 8 653 628 167 31 8 chr3 9031964 9032090 -150567693 - RMER15 LTR ERVL -28 547 419 8 653 393 300 35 7 chr3 9032275 9032416 -150567367 + MLT1A0 LTR MaLR 4 148 -217 8 653 236 239 0 0 chr3 9032485 9032531 -150567252 + GA-rich Low_complexity Low_complexity 3 48 0 8 653 614 127 32 0 chr3 9033244 9033465 -150566318 + (CA)n Simple_repeat Simple_repeat 1 228 0 9 653 316 25 0 0 chr3 9033468 9033508 -150566275 + HAL1-3A_ME LINE L1 1975 2014 -844 9 653 294 265 15 0 chr3 9033554 9033622 -150566161 + ID SINE ID 12 80 -144 9 653 198 0 0 0 chr3 9034895 9034917 -150564866 + (G)n Simple_repeat Simple_repeat 1 22 0 9 653 622 202 288 0 chr3 9035242 9035405 -150564378 - B3 SINE B2 -6 210 1 9 653 256 89 0 43 chr3 9035807 9035854 -150563929 + Lx6 LINE L1 7416 7460 0 9 653 1245 48 0 0 chr3 9035930 9036077 -150563706 + B1_Mus2 SINE Alu 1 147 0 9 653 205 211 0 0 chr3 9036077 9036115 -150563668 + A-rich Low_complexity Low_complexity 1 38 0 9 653 830 109 15 0 chr3 9036769 9036906 -150562877 - B1_Mur3 SINE Alu -1 148 10 9 653 357 191 0 0 chr3 9036946 9037009 -150562774 - MTC LTR MaLR -335 86 24 9 653 924 160 56 20 chr3 9037010 9037208 -150562575 - ORR1C2 LTR MaLR -5 379 175 1 653 521 120 11 0 chr3 9037213 9037305 -150562478 + (TG)n Simple_repeat Simple_repeat 1 93 0 1 653 266 147 0 14 chr3 9037305 9037374 -150562409 + GA-rich Low_complexity Low_complexity 2 69 0 1 653 350 231 0 117 chr3 9037374 9037477 -150562306 - ORR1C2 LTR MaLR -198 180 90 1 653 1504 138 185 0 chr3 9037477 9037817 -150561966 + RLTR28 LTR ERVL 94 496 -28 1 653 180 77 0 0 chr3 9039082 9039108 -150560675 + (GGGGA)n Simple_repeat Simple_repeat 1 26 0 1 653 342 80 356 20 chr3 9039204 9039305 -150560478 - B2_Mm2 SINE B2 -14 181 47 1 653 1350 74 17 0 chr3 9039337 9039513 -150560270 - B2_Mm1t SINE B2 -14 179 1 1 653 3892 157 47 100 chr3 9039601 9040286 -150559497 + L1_Mus1 LINE L1 410 1123 -5493 1 653 1183 28 7 0 chr3 9040286 9040422 -150559361 + B1_Mm SINE Alu 2 138 -9 1 653 183 42 0 0 chr3 9040422 9040446 -150559337 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1 653 30277 99 49 17 chr3 9040453 9043124 -150556659 + L1_Mus1 LINE L1 1124 3934 -1949 1 653 1289 34 0 0 chr3 9043124 9043271 -150556512 + B1_Mm SINE Alu 1 147 0 1 81 30277 95 49 12 chr3 9043271 9045173 -150554610 + L1_Mus1 LINE L1 3935 5791 -92 1 654 1536 53 11 0 chr3 9045173 9045360 -150554423 + B2_Mm1a SINE B2 2 190 -3 1 654 30277 46 35 9 chr3 9045360 9046004 -150553779 + L1_Mus1 LINE L1 5792 6464 -103 1 654 1462 221 30 80 chr3 9046004 9046402 -150553381 - RLTR1B LTR ERV1 0 512 135 1 654 658 49 29 10 chr3 9046492 9046595 -150553188 + L1_Mus1 LINE L1 6461 6565 -2 1 654 544 97 0 21 chr3 9046737 9046811 -150552972 + (TTTC)n Simple_repeat Simple_repeat 2 74 0 1 654 1207 55 7 0 chr3 9046811 9046957 -150552826 - B1_Mus2 SINE Alu 0 147 1 1 654 544 97 0 21 chr3 9046957 9046977 -150552806 + (TTTC)n Simple_repeat Simple_repeat 2 21 0 1 654 1052 95 0 39 chr3 9046987 9047140 -150552643 - B1_Mus2 SINE Alu 0 147 1 1 654 621 310 46 39 chr3 9047830 9048115 -150551668 - B4A SINE B4 -2 290 4 1 654 473 215 0 48 chr3 9048242 9048404 -150551379 + PB1D9 SINE Alu 1 147 -2 1 654 1026 25 0 0 chr3 9048823 9048944 -150550839 + (GA)n Simple_repeat Simple_repeat 1 121 0 1 654 225 246 0 30 chr3 9049266 9049333 -150550450 + L1MC4a LINE L1 6791 6855 -1027 1 654 948 138 0 19 chr3 9049879 9050394 -150549389 + (TG)n Simple_repeat Simple_repeat 1 505 0 1 654 1423 178 22 4 chr3 9050523 9050799 -150548984 + MTD LTR MaLR 1 281 -138 1 654 313 100 20 0 chr3 9050800 9050850 -150548933 + MTD LTR MaLR 231 281 -138 1 654 800 150 75 0 chr3 9050851 9051024 -150548759 + MTD LTR MaLR 231 416 -3 1 654 203 79 26 0 chr3 9051873 9051911 -150547872 + (GGGTG)n Simple_repeat Simple_repeat 3 41 0 1 654 604 157 157 0 chr3 9052548 9052663 -150547120 + B1_Mur4 SINE Alu 9 141 -9 1 654 258 32 0 0 chr3 9052663 9052694 -150547089 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1 654 785 176 156 21 chr3 9052841 9053027 -150546756 + B3 SINE B2 6 216 0 1 654 402 224 10 28 chr3 9053215 9053356 -150546427 - B1_Mur2 SINE Alu 0 149 15 1 654 352 189 154 11 chr3 9053400 9053491 -150546292 + B1_Mur1 SINE Alu 46 149 0 1 654 238 50 0 48 chr3 9053662 9053704 -150546079 + (CCCCG)n Simple_repeat Simple_repeat 5 44 0 1 654 351 0 0 0 chr3 9054265 9054304 -150545479 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 654 238 247 0 27 chr3 9054402 9054477 -150545306 - PB1D10 SINE Alu -35 82 10 1 654 246 262 53 106 chr3 9054534 9054628 -150545155 - PB1D10 SINE Alu -17 103 15 1 654 517 196 25 67 chr3 9054891 9055011 -150544772 - PB1D10 SINE Alu -2 115 1 1 654 413 217 0 6 chr3 9055652 9055833 -150543950 + (CA)n Simple_repeat Simple_repeat 1 180 0 1 654 311 263 0 42 chr3 9056221 9056329 -150543454 - B1F SINE Alu -1 148 19 1 654 234 0 0 0 chr3 9056346 9056372 -150543411 + (TC)n Simple_repeat Simple_repeat 1 26 0 1 654 807 146 0 0 chr3 9056384 9056528 -150543255 + (TG)n Simple_repeat Simple_repeat 1 144 0 1 654 3036 210 92 58 chr3 9056528 9057383 -150542400 + RMER19B LTR ERVK 1 884 -18 1 654 731 276 21 37 chr3 9057435 9057623 -150542160 - B4A SINE B4 -6 286 102 1 654 778 70 0 17 chr3 9057653 9057769 -150542014 + (TTC)n Simple_repeat Simple_repeat 2 115 0 1 654 2722 116 7 17 chr3 9057769 9058182 -150541601 + RLTR9E LTR ERVK 1 409 0 1 654 315 215 7 44 chr3 9058184 9058299 -150541484 + CT-rich Low_complexity Low_complexity 20 131 0 1 654 1144 48 0 52 chr3 9058299 9058454 -150541329 - B1_Mus2 SINE Alu 0 147 1 1 654 315 215 7 44 chr3 9058454 9058474 -150541309 + polypyrimidine Low_complexity Low_complexity 1 19 0 1 654 235 227 125 62 chr3 9058476 9058556 -150541227 - B4 SINE B4 -205 87 3 1 654 257 203 14 86 chr3 9058596 9058666 -150541117 - PB1 SINE Alu -44 83 19 1 654 459 241 71 0 chr3 9058725 9058837 -150540946 + PB1D7 SINE Alu 1 120 0 1 654 352 190 123 25 chr3 9059010 9059091 -150540692 + PB1D9 SINE Alu 32 120 0 1 654 344 77 0 19 chr3 9059091 9059144 -150540639 + (GGAA)n Simple_repeat Simple_repeat 1 52 0 1 654 705 267 53 24 chr3 9059455 9059662 -150540121 + B4A SINE B4 1 213 -79 1 654 850 56 9 0 chr3 9059662 9059770 -150540013 - L1_Mus2 LINE L1 -160 6406 6298 1 654 695 245 56 0 chr3 9059861 9060004 -150539779 + RSINE1 SINE B4 2 152 -13 1 654 888 146 14 14 chr3 9060163 9060309 -150539474 + B1_Mus2 SINE Alu 2 147 0 1 654 900 259 34 0 chr3 9060322 9060527 -150539256 + B3 SINE B2 5 216 0 1 654 854 211 30 35 chr3 9060621 9060818 -150538965 - B3A SINE B2 -1 197 2 1 654 651 211 0 0 chr3 9060965 9061195 -150538588 + (TG)n Simple_repeat Simple_repeat 1 230 0 1 654 316 116 0 0 chr3 9061208 9061251 -150538532 - HAL1-3A_ME LINE L1 -847 2011 1969 1 654 295 251 48 0 chr3 9061330 9061438 -150538345 - MT2A LTR ERVL -4 550 406 1 654 1370 163 14 0 chr3 9061785 9062006 -150537777 - URR1B DNA MER1_type -1 224 1 1 654 791 188 6 0 chr3 9062451 9062627 -150537156 + GA-rich Low_complexity Low_complexity 1 177 0 1 654 687 184 0 22 chr3 9062646 9062829 -150536954 + GA-rich Low_complexity Low_complexity 2 180 0 1 654 443 250 62 0 chr3 9062916 9063012 -150536771 + ID_B1 SINE B4 102 203 -21 1 654 231 300 0 0 chr3 9063149 9063199 -150536584 + B1F1 SINE Alu 12 61 -88 1 654 1256 48 0 0 chr3 9063205 9063352 -150536431 + B1_Mm SINE Alu 1 147 0 1 654 324 285 57 77 chr3 9063352 9063546 -150536237 + L1MD LINE L1 3089 3278 -2868 1 654 256 246 0 0 chr3 9063546 9063607 -150536176 + (CA)n Simple_repeat Simple_repeat 2 62 0 1 654 299 247 124 0 chr3 9063777 9063874 -150535909 - B1F2 SINE Alu 0 149 41 1 654 421 209 260 13 chr3 9064396 9064546 -150535237 - ID_B1 SINE B4 -37 187 1 1 654 361 244 0 47 chr3 9065260 9065346 -150534437 - ID4_ SINE ID 0 83 2 1 654 326 222 11 0 chr3 9065553 9065643 -150534140 + CT-rich Low_complexity Low_complexity 3 93 0 1 654 1071 64 42 14 chr3 9066172 9066302 -150533481 + B1_Mus2 SINE Alu 1 136 -11 1 654 212 59 29 0 chr3 9066302 9066336 -150533447 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1 654 1071 64 42 14 chr3 9066336 9066347 -150533436 + B1_Mus2 SINE Alu 137 146 -1 1 654 337 204 43 11 chr3 9066971 9067065 -150532718 - L1_Rod LINE L1 -15 5832 5736 1 654 478 205 7 11 chr3 9067395 9067508 -150532275 + PB1D10 SINE Alu 1 116 -4 1 654 350 91 18 0 chr3 9067907 9067962 -150531821 + (GGGAGA)n Simple_repeat Simple_repeat 3 58 0 1 654 570 266 130 21 chr3 9067966 9068158 -150531625 - B4 SINE B4 -45 247 35 1 654 306 282 136 8 chr3 9068252 9068384 -150531399 - B1F SINE Alu 0 149 1 1 654 213 39 0 0 chr3 9068482 9068508 -150531275 + (TTCTC)n Simple_repeat Simple_repeat 1 26 0 1 654 952 103 29 0 chr3 9068509 9068683 -150531100 + (TC)n Simple_repeat Simple_repeat 2 180 0 1 654 1063 37 82 0 chr3 9068683 9068817 -150530966 - B1_Mm SINE Alu -2 145 1 1 654 509 281 43 29 chr3 9068832 9068971 -150530812 + ID_B1 SINE B4 81 221 -3 1 654 258 136 0 0 chr3 9069144 9069188 -150530595 + (CAGT)n Simple_repeat Simple_repeat 2 45 0 1 654 689 267 15 0 chr3 9069435 9069570 -150530213 + RSINE1 SINE B4 3 139 -26 1 654 647 108 10 0 chr3 9069574 9069676 -150530107 + (CA)n Simple_repeat Simple_repeat 1 103 0 1 654 228 174 85 142 chr3 9070047 9070188 -150529595 + LTR41 LTR ERVL 186 318 -450 1 654 337 269 0 0 chr3 9070867 9070945 -150528838 - ID2 SINE ID -2 81 4 1 654 218 267 44 0 chr3 9071095 9071140 -150528643 - ID2 SINE ID -34 49 3 1 654 290 251 80 12 chr3 9071140 9071224 -150528559 - PB1D10 SINE Alu -28 92 1 1 654 215 222 18 18 chr3 9071810 9071865 -150527918 + PB1D7 SINE Alu 66 120 0 1 654 969 126 14 34 chr3 9072426 9072574 -150527209 - B1_Mur3 SINE Alu -4 145 1 1 654 243 23 68 0 chr3 9073347 9073391 -150526392 + (CAAAAA)n Simple_repeat Simple_repeat 2 48 0 1 654 539 246 32 0 chr3 9073716 9073842 -150525941 + RSINE1 SINE B4 14 143 -22 1 654 1227 54 0 13 chr3 9073899 9074048 -150525735 + B1_Mus1 SINE Alu 2 148 0 1 654 192 135 0 0 chr3 9074048 9074085 -150525698 + (CAAAAA)n Simple_repeat Simple_repeat 6 42 0 1 654 385 284 225 11 chr3 9074181 9074359 -150525424 + ID_B1 SINE B4 3 218 -6 1 654 1071 78 0 21 chr3 9074460 9074604 -150525179 - B1_Mm SINE Alu -6 141 1 1 654 7500 48 4 0 chr3 9074615 9075560 -150524223 - L1Md_F2 LINE L1 -1 6581 5633 1 654 26 0 0 0 chr3 9075608 9075634 -150524149 + AT_rich Low_complexity Low_complexity 1 26 0 1 654 312 27 0 0 chr3 9075781 9075818 -150523965 + (TG)n Simple_repeat Simple_repeat 2 38 0 1 654 305 284 0 0 chr3 9076067 9076134 -150523649 + ID4 SINE ID 8 74 -9 2 654 1234 41 14 0 chr3 9076173 9076318 -150523465 + B1_Mus1 SINE Alu 2 148 0 2 654 220 350 90 32 chr3 9076473 9076662 -150523121 + L2a LINE L2 3226 3425 -1 2 654 593 277 66 28 chr3 9077510 9077692 -150522091 - B3A SINE B2 0 198 10 2 654 342 0 0 0 chr3 9077692 9077730 -150522053 + (TG)n Simple_repeat Simple_repeat 2 39 0 2 654 378 225 156 11 chr3 9077730 9077820 -150521963 - B1F1 SINE Alu -13 136 34 2 654 213 250 49 16 chr3 9077855 9077916 -150521867 + B1_Mus2 SINE Alu 1 63 -84 2 654 180 111 0 0 chr3 9078127 9078154 -150521629 + (TG)n Simple_repeat Simple_repeat 1 27 0 2 654 195 42 0 0 chr3 9078168 9078192 -150521591 + (CA)n Simple_repeat Simple_repeat 1 24 0 2 654 309 269 36 55 chr3 9079733 9079843 -150519940 + PB1D7 SINE Alu 1 111 -9 2 654 220 302 0 0 chr3 9079846 9079899 -150519884 + C-rich Low_complexity Low_complexity 1 53 0 2 654 542 291 7 7 chr3 9080717 9080859 -150518924 + B1F2 SINE Alu 2 143 -6 2 654 288 263 0 38 chr3 9081030 9081109 -150518674 + ID4 SINE ID 1 76 -7 2 654 21 0 0 0 chr3 9081509 9081530 -150518253 + AT_rich Low_complexity Low_complexity 1 21 0 2 654 561 224 73 10 chr3 9081861 9082009 -150517774 - ID_B1 SINE B4 -46 246 84 2 654 186 71 0 0 chr3 9082460 9082488 -150517295 + (G)n Simple_repeat Simple_repeat 1 28 0 2 654 644 155 9 18 chr3 9082544 9082656 -150517127 + B1_Mur4 SINE Alu 35 145 -5 2 654 207 0 0 0 chr3 9082676 9082699 -150517084 + (CAA)n Simple_repeat Simple_repeat 2 24 0 2 654 278 320 110 0 chr3 9082878 9082978 -150516805 - B1F1 SINE Alu -7 142 32 2 654 1265 34 0 13 chr3 9082979 9083128 -150516655 + B1_Mm SINE Alu 1 147 0 2 654 817 218 7 0 chr3 9083238 9083385 -150516398 - B1_Mur4 SINE Alu 0 150 3 2 654 259 321 24 0 chr3 9083519 9083603 -150516180 + MER2 DNA MER2_type 79 164 -181 2 654 215 301 118 133 chr3 9083603 9083615 -150516168 + ID_B1 SINE B4 92 212 -12 2 654 336 236 0 82 chr3 9083615 9083712 -150516071 + PB1D10 SINE Alu 17 105 -12 2 654 222 220 48 48 chr3 9083756 9083818 -150515965 + B1F SINE Alu 87 148 -1 2 654 939 168 0 0 chr3 9083819 9083968 -150515815 + B1_Mur1 SINE Alu 1 149 0 2 654 386 151 0 14 chr3 9083972 9084046 -150515737 + A-rich Low_complexity Low_complexity 3 75 0 2 654 217 109 21 21 chr3 9084048 9084095 -150515688 + G-rich Low_complexity Low_complexity 3 49 0 2 654 267 330 46 40 chr3 9084456 9084664 -150515119 - L2a LINE L2 0 3426 3172 2 654 327 292 57 0 chr3 9084790 9084896 -150514887 - PB1 SINE Alu -92 219 22 2 654 477 292 32 38 chr3 9084989 9085157 -150514626 + ID_B1 SINE B4 80 249 -43 2 654 397 344 31 16 chr3 9085156 9085283 -150514500 + B1F1 SINE Alu 8 136 -13 2 654 484 271 153 139 chr3 9085589 9085876 -150513907 + B4A SINE B4 2 292 0 2 654 522 203 0 0 chr3 9085876 9086024 -150513759 + (CA)n Simple_repeat Simple_repeat 1 148 0 2 654 195 42 0 0 chr3 9086062 9086086 -150513697 + (CA)n Simple_repeat Simple_repeat 1 24 0 2 654 504 227 0 0 chr3 9086130 9086280 -150513503 + (CA)n Simple_repeat Simple_repeat 1 150 0 2 654 316 321 0 0 chr3 9086296 9086380 -150513403 + (CA)n Simple_repeat Simple_repeat 1 84 0 2 654 675 220 0 0 chr3 9086975 9087093 -150512690 + RSINE1 SINE B4 9 126 -39 2 654 776 167 90 0 chr3 9087107 9087263 -150512520 - Lx7 LINE L1 -653 7043 6874 2 654 3848 175 62 113 chr3 9087261 9088767 -150511016 - Lx7 LINE L1 -1022 6674 5219 2 654 3084 77 7 12 chr3 9088767 9089176 -150510607 - MTB_Mm LTR MaLR 0 407 1 2 654 2982 144 67 120 chr3 9089176 9089247 -150510536 - Lx7 LINE L1 -662 5218 5148 2 654 24 0 0 0 chr3 9089258 9089282 -150510501 + AT_rich Low_complexity Low_complexity 1 24 0 2 654 259 248 127 73 chr3 9089604 9089769 -150510014 - MIRb SINE MIR -29 239 66 2 654 414 0 0 0 chr3 9089795 9089841 -150509942 + (CA)n Simple_repeat Simple_repeat 1 46 0 2 654 499 286 38 13 chr3 9090043 9090232 -150509551 + MIRc SINE MIR 11 210 -58 2 654 324 171 45 68 chr3 9090836 9090924 -150508859 - B3 SINE B2 -5 211 126 2 654 819 80 0 0 chr3 9090943 9091055 -150508728 + (TTTC)n Simple_repeat Simple_repeat 3 114 0 2 654 1346 85 0 26 chr3 9091056 9091250 -150508533 - B2_Mm2 SINE B2 -5 190 2 2 654 3281 8 6 3 chr3 9091455 9091821 -150507962 + IAPLTR1_Mm LTR ERVK 1 367 0 2 654 8198 80 67 11 chr3 9091821 9093123 -150506660 + IAPEz-int LTR ERVK 8 1313 -5168 2 654 28164 19 1 2 chr3 9093122 9096397 -150503386 + IAPEz-int LTR ERVK 3210 6481 0 2 654 3281 8 6 3 chr3 9096397 9096763 -150503020 + IAPLTR1_Mm LTR ERVK 1 367 0 2 654 229 315 33 11 chr3 9096794 9096884 -150502899 + PB1D10 SINE Alu 1 92 -25 2 654 247 313 0 88 chr3 9096897 9096988 -150502795 + ID4 SINE ID 1 83 0 2 654 241 311 17 112 chr3 9096988 9097013 -150502770 + ID_B1 SINE B4 1 105 -119 2 654 290 313 0 0 chr3 9097020 9097087 -150502696 + AluG_3 SINE Alu 148 214 -97 2 654 379 260 247 52 chr3 9097076 9097139 -150502644 + ID_B1 SINE B4 36 219 -5 2 654 468 198 55 0 chr3 9097139 9097230 -150502553 + PB1D10 SINE Alu 17 112 -5 2 654 227 236 17 52 chr3 9097324 9097382 -150502401 + RSINE1 SINE B4 107 162 -3 2 654 1190 41 14 0 chr3 9098899 9099044 -150500739 - B1_Mus2 SINE Alu 0 147 1 2 654 691 203 7 20 chr3 9099154 9099300 -150500483 - B1_Mur2 SINE Alu -1 148 5 2 654 476 226 55 28 chr3 9099337 9099446 -150500337 - PB1D7 SINE Alu -8 112 1 2 654 671 156 18 171 chr3 9099758 9099928 -150499855 + B1_Mur1 SINE Alu 1 144 -5 2 654 322 279 0 71 chr3 9100112 9100197 -150499586 - RSINE1 SINE B4 0 165 87 2 654 295 292 24 103 chr3 9100241 9100367 -150499416 - B4A SINE B4 -141 151 36 2 654 490 244 0 80 chr3 9100520 9100645 -150499138 - PB1D10 SINE Alu 0 117 3 2 654 241 224 35 0 chr3 9101986 9102044 -150497739 + ID4 SINE ID 23 82 -1 2 654 323 316 17 0 chr3 9102420 9102537 -150497246 - ID_B1 SINE B4 -98 126 8 2 654 192 179 0 0 chr3 9102888 9102927 -150496856 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 2 654 316 374 6 81 chr3 9103349 9103509 -150496274 - ID_B1 SINE B4 -71 153 6 2 654 260 367 20 48 chr3 9103625 9103771 -150496012 + B1F1 SINE Alu 5 146 -3 2 654 498 223 107 0 chr3 9103949 9104070 -150495713 - ID_B1 SINE B4 -11 213 80 2 654 209 251 60 70 chr3 9104129 9104259 -150495524 + MIRb SINE MIR 40 171 -105 2 654 274 337 0 0 chr3 9104434 9104517 -150495266 + ID4 SINE ID 1 83 0 2 654 234 0 0 0 chr3 9104562 9104588 -150495195 + (TTA)n Simple_repeat Simple_repeat 3 28 0 2 654 500 235 81 32 chr3 9104594 9104717 -150495066 - B1_Mus2 SINE Alu -18 129 1 2 654 266 225 33 22 chr3 9104809 9104900 -150494883 + L1M1 LINE L1 5737 5828 -472 2 654 646 159 143 0 chr3 9104928 9105054 -150494729 - B1_Mur4 SINE Alu 0 150 7 2 654 301 288 57 9 chr3 9105097 9105202 -150494581 - PB1 SINE Alu -5 122 13 2 654 432 218 0 75 chr3 9105544 9105638 -150494145 - PB1D10 SINE Alu -30 87 1 2 654 441 284 66 15 chr3 9106523 9106659 -150493124 - ID_B1 SINE B4 0 224 82 2 654 254 290 150 68 chr3 9106718 9106851 -150492932 - B1F1 SINE Alu 0 149 6 2 654 247 269 124 103 chr3 9106725 9106870 -150492913 - ID_B1 SINE B4 -7 217 70 2 654 377 292 31 0 chr3 9106870 9106966 -150492817 - PB1D7 SINE Alu -21 99 1 2 654 336 283 102 8 chr3 9107260 9107388 -150492395 - L1MA4A LINE L1 -384 5919 5780 2 654 499 295 103 43 chr3 9107427 9107661 -150492122 - B4 SINE B4 -2 290 43 2 654 363 326 63 35 chr3 9108249 9108392 -150491391 - B1F1 SINE Alu -1 148 2 2 654 237 333 56 16 chr3 9108451 9108576 -150491207 - ID_B1 SINE B4 -94 130 1 2 654 204 280 0 20 chr3 9108583 9108634 -150491149 + polypyrimidine Low_complexity Low_complexity 1 50 0 2 654 256 341 35 0 chr3 9108635 9108720 -150491063 - B1F SINE Alu -22 127 40 2 654 393 262 126 0 chr3 9108649 9108752 -150491031 - ID_B1 SINE B4 -33 191 76 2 654 321 271 103 0 chr3 9108752 9108859 -150490924 - PB1D7 SINE Alu 0 120 3 2 654 369 0 0 0 chr3 9109203 9109244 -150490539 + (TG)n Simple_repeat Simple_repeat 2 42 0 2 654 408 221 46 11 chr3 9111270 9111357 -150488426 - PB1D7 SINE Alu -1 119 30 2 654 519 289 23 15 chr3 9111576 9111706 -150488077 - B1F SINE Alu -13 136 6 2 654 257 339 42 118 chr3 9111604 9111748 -150488035 - B4A SINE B4 -94 198 66 2 654 238 250 0 38 chr3 9111794 9111873 -150487910 + CT-rich Low_complexity Low_complexity 1 76 0 2 654 354 289 22 22 chr3 9111873 9111965 -150487818 - ID_B1 SINE B4 -21 203 112 2 654 265 311 66 0 chr3 9112111 9112233 -150487550 - L1MB8 LINE L1 -172 6006 5877 2 654 329 184 264 1 chr3 9112249 9112343 -150487440 - PB1D10 SINE Alu -21 128 10 2 654 293 225 32 53 chr3 9112430 9112524 -150487259 - PB1D7 SINE Alu -23 97 6 2 654 512 250 57 29 chr3 9112895 9113035 -150486748 - B3 SINE B2 0 216 73 2 654 246 178 47 52 chr3 9114012 9114087 -150485696 - B1F SINE Alu -7 142 37 2 654 1046 197 25 0 chr3 9114327 9114530 -150485253 - B3 SINE B2 -7 209 2 2 654 246 286 16 0 chr3 9114596 9114659 -150485124 + ID4 SINE ID 2 65 -18 2 654 258 32 0 0 chr3 9114816 9114847 -150484936 + (TTCA)n Simple_repeat Simple_repeat 3 33 0 2 654 443 280 0 0 chr3 9114849 9114942 -150484841 - PB1D10 SINE Alu -15 102 10 2 654 420 20 0 0 chr3 9114951 9115000 -150484783 + (TCCC)n Simple_repeat Simple_repeat 4 52 0 3 654 366 202 95 0 chr3 9115018 9115102 -150484681 - ID_B1 SINE B4 -33 191 100 3 654 1072 289 54 14 chr3 9115181 9115458 -150484325 + B4A SINE B4 1 288 -4 3 654 200 167 0 45 chr3 9115625 9115654 -150484129 + T-rich Low_complexity Low_complexity 15 43 0 3 654 642 210 42 7 chr3 9115654 9115798 -150483985 - B1_Mur2 SINE Alu 0 149 1 3 654 200 167 0 45 chr3 9115798 9115812 -150483971 + T-rich Low_complexity Low_complexity 2 14 0 3 654 300 205 56 67 chr3 9115816 9115905 -150483878 - PB1D7 SINE Alu -3 117 30 3 654 318 154 45 32 chr3 9116711 9116865 -150482918 + (TG)n Simple_repeat Simple_repeat 2 157 0 3 654 260 281 12 12 chr3 9116939 9117022 -150482761 + ID4_ SINE ID 1 83 0 3 654 522 257 9 0 chr3 9117231 9117336 -150482447 - B1_Mur1 SINE Alu -12 137 32 3 654 554 343 64 55 chr3 9117855 9118198 -150481585 + ORR1E LTR MaLR 3 348 -11 3 654 30 0 0 0 chr3 9118235 9118265 -150481518 + AT_rich Low_complexity Low_complexity 1 30 0 3 654 263 238 30 23 chr3 9118626 9118722 -150481061 + PB1D10 SINE Alu 10 104 -16 3 654 471 108 0 31 chr3 9119528 9119624 -150480159 + (TG)n Simple_repeat Simple_repeat 2 94 0 3 654 783 267 46 20 chr3 9119634 9119861 -150479922 - B4 SINE B4 -3 289 76 3 654 270 65 22 0 chr3 9119874 9119920 -150479863 - B1_Mus2 SINE Alu 0 147 101 3 654 299 115 0 32 chr3 9120264 9120327 -150479456 + (CTG)n Simple_repeat Simple_repeat 1 61 0 3 654 287 330 95 41 chr3 9120409 9120630 -150479153 - B4A SINE B4 -58 234 2 3 654 1077 228 69 72 chr3 9120982 9121342 -150478441 - ORR1D2 LTR MaLR -7 363 5 3 654 227 326 57 43 chr3 9121450 9121591 -150478192 + MTEa LTR MaLR 180 322 -57 3 654 381 230 39 16 chr3 9121907 9122010 -150477773 - B1F SINE Alu -40 110 5 3 654 213 280 37 74 chr3 9121924 9122032 -150477751 - ID_B1 SINE B4 -55 169 66 3 654 684 273 7 0 chr3 9122382 9122525 -150477258 - B1F SINE Alu 0 149 6 3 654 257 262 49 113 chr3 9122599 9122741 -150477042 + MLT1A1 LTR MaLR 1 133 -275 3 654 303 325 0 0 chr3 9123770 9123853 -150475930 - ID2 SINE ID 0 83 1 3 654 715 164 98 0 chr3 9123853 9123975 -150475808 - B1_Mus2 SINE Alu -13 134 1 3 654 299 303 30 0 chr3 9124027 9124126 -150475657 + GA-rich Low_complexity Low_complexity 2 103 0 3 654 298 247 125 31 chr3 9124946 9125042 -150474741 - B1F1 SINE Alu -22 105 1 3 654 271 263 129 17 chr3 9125378 9125494 -150474289 + B1F SINE Alu 21 149 0 3 654 24 53 0 0 chr3 9125584 9125622 -150474161 + AT_rich Low_complexity Low_complexity 1 38 0 3 654 686 183 0 107 chr3 9125624 9125644 -150474139 - B1_Mur4 SINE Alu -5 145 128 3 654 507 33 0 0 chr3 9125644 9125705 -150474078 + (TG)n Simple_repeat Simple_repeat 2 62 0 3 654 686 183 0 107 chr3 9125705 9125843 -150473940 - B1_Mur4 SINE Alu -23 127 4 3 654 355 221 0 144 chr3 9125728 9125860 -150473923 - MT2B LTR ERVL -337 264 152 3 654 491 264 54 0 chr3 9126651 9126780 -150473003 - RSINE1 SINE B4 -5 160 25 3 654 21 36 0 0 chr3 9127126 9127154 -150472629 + AT_rich Low_complexity Low_complexity 1 28 0 3 654 1284 84 0 0 chr3 9128689 9128868 -150470915 + (TC)n Simple_repeat Simple_repeat 2 180 0 3 654 240 111 0 0 chr3 9128868 9128904 -150470879 + (TTTC)n Simple_repeat Simple_repeat 4 39 0 3 654 657 0 0 0 chr3 9128924 9128997 -150470786 + (TTTC)n Simple_repeat Simple_repeat 2 74 0 3 654 428 316 110 57 chr3 9129014 9129242 -150470541 - B4 SINE B4 -24 268 29 3 654 428 256 212 65 chr3 9129414 9129631 -150470152 - MLT1D LTR MaLR 0 505 257 3 654 424 308 8 33 chr3 9129688 9129809 -150469974 - PB1 SINE Alu 0 127 10 3 654 1304 101 17 0 chr3 9129861 9130039 -150469744 + B2_Mm2 SINE B2 1 181 -14 3 654 216 0 0 0 chr3 9130082 9130106 -150469677 + (A)n Simple_repeat Simple_repeat 1 24 0 3 654 373 169 0 0 chr3 9130119 9130178 -150469605 + B3 SINE B2 1 59 -157 3 654 230 254 18 0 chr3 9130230 9130285 -150469498 + B4A SINE B4 9 64 -228 3 654 526 264 129 0 chr3 9130365 9130528 -150469255 - B3 SINE B2 -25 191 8 3 654 577 200 34 25 chr3 9130674 9130792 -150468991 - PB1D9 SINE Alu 0 120 2 3 654 225 119 0 0 chr3 9130824 9130866 -150468917 + (TG)n Simple_repeat Simple_repeat 1 42 0 3 654 275 104 21 0 chr3 9130875 9130923 -150468860 + (TC)n Simple_repeat Simple_repeat 2 50 0 3 654 28 29 0 0 chr3 9131345 9131380 -150468403 + AT_rich Low_complexity Low_complexity 1 35 0 3 654 789 287 57 57 chr3 9131420 9131627 -150468156 - B4 SINE B4 -6 286 87 3 654 279 0 0 0 chr3 9131627 9131658 -150468125 + (TG)n Simple_repeat Simple_repeat 2 32 0 3 654 789 287 57 57 chr3 9131658 9131731 -150468052 - B4 SINE B4 -206 86 6 3 654 4646 107 20 1 chr3 9132905 9133563 -150466220 + Lx2 LINE L1 6306 6975 -22 3 654 188 0 0 69 chr3 9133563 9133592 -150466191 + (TAAAA)n Simple_repeat Simple_repeat 3 29 0 3 654 236 28 56 0 chr3 9133604 9133640 -150466143 + (CAAAA)n Simple_repeat Simple_repeat 3 40 0 3 654 196 330 94 28 chr3 9133644 9133750 -150466033 + MIRm SINE MIR 65 177 -99 3 654 212 231 203 33 chr3 9133896 9134058 -150465725 - MIRc SINE MIR -67 201 6 3 654 200 0 100 0 chr3 9134618 9134648 -150465135 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 3 654 713 207 59 0 chr3 9134673 9134808 -150464975 + B1_Mur2 SINE Alu 1 143 -6 3 654 786 22 0 0 chr3 9134828 9134920 -150464863 + (GAGAA)n Simple_repeat Simple_repeat 2 93 0 3 654 1767 241 68 44 chr3 9135228 9135770 -150464013 - Lx7 LINE L1 -328 7368 6814 3 654 258 79 38 38 chr3 9135824 9135903 -150463880 + (TTTG)n Simple_repeat Simple_repeat 2 80 0 3 654 1224 54 0 13 chr3 9135907 9136056 -150463727 - B1_Mus2 SINE Alu 0 147 1 3 654 480 268 0 51 chr3 9136167 9136231 -150463552 + ID_B1 SINE B4 105 168 -56 3 654 3294 31 13 3 chr3 9136231 9136623 -150463160 + MTA_Mm LTR MaLR 1 396 0 3 654 480 268 0 51 chr3 9136623 9136676 -150463107 + ID_B1 SINE B4 169 216 -8 3 654 602 273 154 25 chr3 9136794 9137011 -150462772 + B4 SINE B4 30 276 -16 3 654 251 321 24 97 chr3 9137832 9137956 -150461827 + PB1D10 SINE Alu 1 115 -2 3 654 903 157 0 0 chr3 9138177 9138311 -150461472 - B1_Mur4 SINE Alu -16 134 1 3 654 476 174 39 0 chr3 9138340 9138433 -150461350 + PB1D9 SINE Alu 19 115 -34 3 654 512 171 24 0 chr3 9138739 9138821 -150460962 + PB1D9 SINE Alu 29 112 -8 3 654 577 262 121 19 chr3 9138843 9139047 -150460736 - B3A SINE B2 -5 211 1 3 654 470 279 0 46 chr3 9139050 9139159 -150460624 - PB1D10 SINE Alu -2 115 12 3 654 336 252 39 48 chr3 9139263 9139367 -150460416 + ID_B1 SINE B4 73 175 -49 3 654 323 247 24 24 chr3 9139610 9139693 -150460090 - RMER15 LTR ERVL -157 418 336 3 654 364 296 60 20 chr3 9139865 9139965 -150459818 - RMER15-int LTR ERVL -5 4994 4891 3 654 360 231 0 0 chr3 9139968 9140072 -150459711 + (ATGGTG)n Simple_repeat Simple_repeat 4 107 0 3 654 249 33 0 0 chr3 9140127 9140157 -150459626 + (TTA)n Simple_repeat Simple_repeat 2 31 0 3 654 246 311 56 19 chr3 9140191 9140299 -150459484 - RMER15 LTR ERVL -179 396 285 3 654 900 269 58 146 chr3 9140533 9140972 -150458811 + L1M2 LINE L1 4033 4429 -1714 3 654 1305 109 16 0 chr3 9140972 9141156 -150458627 + B2_Mm2 SINE B2 1 187 -8 3 654 900 269 58 146 chr3 9141156 9141613 -150458170 + L1M2 LINE L1 4430 4850 -1293 3 654 292 294 65 14 chr3 9141826 9141964 -150457819 - L1MA4 LINE L1 -396 5904 5760 3 654 1059 316 142 30 chr3 9142409 9143253 -150456530 + L1_Mur3 LINE L1 4838 5773 -107 3 654 243 125 0 0 chr3 9143258 9143298 -150456485 + (TG)n Simple_repeat Simple_repeat 1 40 0 3 654 216 67 0 0 chr3 9143574 9143604 -150456179 + (TTTTA)n Simple_repeat Simple_repeat 2 31 0 3 654 1282 207 28 158 chr3 9144864 9145299 -150454484 + ORR1C2 LTR MaLR 1 384 0 3 654 519 306 77 33 chr3 9146331 9146605 -150453178 + L2 LINE L2 1789 2074 -1345 3 654 329 206 0 0 chr3 9146632 9146695 -150453088 - tRNA-Ala-GCY_ tRNA tRNA -12 63 1 3 654 594 272 7 5 chr3 9146934 9147084 -150452699 + B1_Mur1 SINE Alu 5 149 0 3 654 216 260 0 0 chr3 9147101 9147151 -150452632 + L2 LINE L2 2328 2377 -1042 3 654 472 259 13 92 chr3 9147436 9147589 -150452194 + B1F2 SINE Alu 1 141 -8 3 654 855 232 48 88 chr3 9147793 9148043 -150451740 - MTEa LTR MaLR 0 379 140 3 654 324 159 101 0 chr3 9148039 9148108 -150451675 + MTEa LTR MaLR 32 107 -272 3 654 528 270 13 26 chr3 9148171 9148327 -150451456 + RSINE1 SINE B4 3 156 -9 3 654 513 209 0 0 chr3 9148522 9148608 -150451175 - RSINE1 SINE B4 -78 87 2 3 654 225 236 111 0 chr3 9148732 9148804 -150450979 + ID4 SINE ID 1 80 -3 3 654 249 241 0 57 chr3 9149034 9149122 -150450661 - L1ME1 LINE L1 -256 5923 5841 3 654 1458 184 150 59 chr3 9149158 9149323 -150450460 + ORR1C2 LTR MaLR 1 165 -219 3 654 1470 52 5 45 chr3 9149323 9149524 -150450259 + B2_Mm1t SINE B2 1 193 0 3 654 1458 184 150 59 chr3 9149524 9149546 -150450237 + ORR1C2 LTR MaLR 166 179 -205 3 654 426 20 0 0 chr3 9149546 9149597 -150450186 + (TCTG)n Simple_repeat Simple_repeat 2 52 0 3 654 1458 184 150 59 chr3 9149597 9149749 -150450034 + ORR1C2 LTR MaLR 180 372 -12 3 654 554 327 80 0 chr3 9149969 9150383 -150449400 + L1MA4 LINE L1 5349 5818 -485 3 654 598 309 20 7 chr3 9150388 9150538 -150449245 + RSINE1 SINE B4 2 153 -12 3 654 2243 82 43 28 chr3 9150574 9150926 -150448857 + Lx LINE L1 6292 6648 -6 3 654 237 267 53 43 chr3 9150986 9151080 -150448703 + L1MA4 LINE L1 5847 5941 -359 3 654 549 204 105 8 chr3 9151293 9151426 -150448357 + B1_Mur2 SINE Alu 1 146 -3 3 654 354 213 26 13 chr3 9151468 9151620 -150448163 + GA-rich Low_complexity Low_complexity 1 154 0 4 654 232 250 104 61 chr3 9151872 9151942 -150447841 - L1ME1 LINE L1 -785 5361 5283 3 654 307 224 114 76 chr3 9151942 9152126 -150447657 - B3A SINE B2 -6 192 2 4 654 232 250 104 61 chr3 9152126 9152285 -150447498 - L1ME1 LINE L1 -864 5282 5122 3 654 311 216 18 18 chr3 9152505 9152618 -150447165 + CT-rich Low_complexity Low_complexity 3 115 0 4 654 263 216 318 0 chr3 9152619 9152707 -150447076 - PB1D7 SINE Alu 0 120 5 4 654 269 177 47 31 chr3 9154252 9154316 -150445467 - BC1_Mm scRNA scRNA -73 79 15 4 654 234 217 56 42 chr3 9155401 9155473 -150444310 + ID4 SINE ID 1 73 -10 4 654 333 68 0 0 chr3 9155477 9155521 -150444262 + (TGAA)n Simple_repeat Simple_repeat 3 46 0 4 654 804 171 46 8 chr3 9155584 9155714 -150444069 + B1_Mus2 SINE Alu 13 147 0 4 654 327 193 200 88 chr3 9155758 9155883 -150443900 + B1_Mur4 SINE Alu 3 141 -9 4 654 216 0 0 0 chr3 9156035 9156059 -150443724 + (TG)n Simple_repeat Simple_repeat 1 24 0 4 654 192 368 0 0 chr3 9156335 9156403 -150443380 - MER5B DNA MER1_type -54 124 57 4 654 45 19 0 0 chr3 9156986 9157038 -150442745 + AT_rich Low_complexity Low_complexity 1 52 0 4 654 2670 147 83 81 chr3 9157149 9157742 -150442041 + RMER19B LTR ERVK 65 658 -244 4 654 307 279 46 40 chr3 9157877 9157979 -150441804 - B1F1 SINE Alu -48 101 2 4 654 255 61 0 0 chr3 9158188 9158221 -150441562 + (TTAA)n Simple_repeat Simple_repeat 4 36 0 4 654 254 296 0 0 chr3 9158239 9158293 -150441490 + tRNA-Gly-GGY tRNA tRNA 7 60 -14 4 654 1070 51 73 0 chr3 9158312 9158449 -150441334 + B1_Mm SINE Alu 1 147 0 4 654 188 130 22 0 chr3 9158449 9158495 -150441288 + (CAAA)n Simple_repeat Simple_repeat 4 50 0 4 654 1256 65 101 0 chr3 9158500 9158669 -150441114 + B2_Mm2 SINE B2 2 187 -8 4 654 26 30 0 0 chr3 9158674 9158707 -150441076 + AT_rich Low_complexity Low_complexity 1 33 0 4 654 536 168 73 0 chr3 9158805 9158911 -150440872 + B1_Mus1 SINE Alu 3 120 0 4 654 441 59 31 0 chr3 9158932 9159007 -150440776 + B1_Mus2 SINE Alu 40 147 0 4 654 22 0 0 0 chr3 9159783 9159805 -150439978 + AT_rich Low_complexity Low_complexity 1 22 0 4 654 467 285 84 26 chr3 9159896 9160051 -150439732 + ID_B1 SINE B4 2 165 -59 4 654 448 180 33 11 chr3 9160115 9160205 -150439578 - B1_Mus2 SINE Alu 0 147 56 4 654 280 161 204 80 chr3 9160148 9160236 -150439547 - MT2B LTR ERVL -337 264 166 4 654 204 174 21 21 chr3 9161245 9161292 -150438491 + CT-rich Low_complexity Low_complexity 1 47 0 4 654 6424 288 98 45 chr3 9162234 9162773 -150437010 + Lx8 LINE L1 1625 2164 -3716 4 654 614 328 0 31 chr3 9162773 9162965 -150436818 + B3A SINE B2 1 186 -12 4 654 6424 288 98 45 chr3 9162965 9163034 -150436749 + Lx8 LINE L1 2165 2194 -3686 4 654 582 151 0 48 chr3 9163034 9163159 -150436624 - L1Md_F2 LINE L1 -1 6581 6463 4 654 6424 288 98 45 chr3 9163159 9163930 -150435853 + Lx8 LINE L1 2195 3008 -2872 4 654 753 230 0 0 chr3 9163930 9164078 -150435705 + B1_Mur1 SINE Alu 1 148 -1 4 654 6424 288 98 45 chr3 9164078 9164220 -150435563 + Lx8 LINE L1 3009 3134 -2746 4 654 1429 67 5 40 chr3 9164220 9164421 -150435362 + B2_Mm2 SINE B2 2 195 0 4 654 6424 288 98 45 chr3 9164421 9166853 -150432930 + Lx8 LINE L1 3135 5789 -91 4 654 813 206 7 0 chr3 9166856 9167002 -150432781 + B1_Mus2 SINE Alu 1 147 0 4 654 2556 284 91 99 chr3 9167056 9167876 -150431907 + Lx8 LINE L1 5780 6550 -923 4 654 2870 6 0 9 chr3 9167876 9168199 -150431584 - L1Md_T LINE L1 0 6582 6263 4 654 2556 284 91 99 chr3 9168199 9168756 -150431027 + Lx8 LINE L1 6551 7147 -326 4 654 370 258 30 20 chr3 9168780 9168809 -150430974 + B4A SINE B4 57 86 -206 4 654 516 278 0 0 chr3 9168809 9168924 -150430859 + PB1D7 SINE Alu 3 117 -3 4 654 374 82 49 0 chr3 9169511 9169572 -150430211 + (GGGGA)n Simple_repeat Simple_repeat 5 68 0 4 654 231 217 0 21 chr3 9169673 9169720 -150430063 + ZP3AR Satellite Satellite 36 81 -131 4 654 257 180 79 32 chr3 9169683 9169746 -150430037 + ID4_ SINE ID 4 69 -14 4 654 383 214 141 3 chr3 9170269 9170413 -150429370 + L1MA7 LINE L1 6138 6299 -1 4 654 231 233 27 0 chr3 9170830 9170903 -150428880 - ID4_ SINE ID -7 76 2 4 654 329 234 117 66 chr3 9170943 9171080 -150428703 + MTD LTR MaLR 18 161 -258 4 654 285 29 0 0 chr3 9171132 9171166 -150428617 + (TG)n Simple_repeat Simple_repeat 1 34 0 4 654 234 0 0 0 chr3 9171201 9171227 -150428556 + (TG)n Simple_repeat Simple_repeat 1 26 0 4 654 280 226 0 0 chr3 9171229 9171282 -150428501 + MTD LTR MaLR 146 198 -221 4 654 295 257 28 28 chr3 9171254 9171326 -150428457 + B3A SINE B2 5 76 -122 4 654 387 350 26 0 chr3 9171486 9171603 -150428180 + B1F SINE Alu 18 137 -12 4 654 594 264 135 16 chr3 9171626 9171784 -150427999 + B3 SINE B2 2 181 -35 4 654 468 0 0 0 chr3 9171784 9171836 -150427947 + (TC)n Simple_repeat Simple_repeat 1 52 0 4 654 201 39 0 0 chr3 9171837 9171863 -150427920 + (TG)n Simple_repeat Simple_repeat 2 27 0 4 654 594 264 135 16 chr3 9171863 9171883 -150427900 + B3 SINE B2 182 204 -12 4 654 510 17 0 0 chr3 9171883 9171942 -150427841 + (GA)n Simple_repeat Simple_repeat 1 59 0 4 654 261 200 63 48 chr3 9171952 9172015 -150427768 + ID4_ SINE ID 4 67 -16 4 654 352 170 19 0 chr3 9172036 9172142 -150427641 + (CAG)n Simple_repeat Simple_repeat 1 108 0 4 654 222 177 32 16 chr3 9172142 9172205 -150427578 + GA-rich Low_complexity Low_complexity 3 66 0 4 654 517 153 22 28 chr3 9172206 9172387 -150427396 + (CAG)n Simple_repeat Simple_repeat 1 180 0 4 654 403 156 0 82 chr3 9172432 9172627 -150427156 + GA-rich Low_complexity Low_complexity 2 180 0 4 654 209 174 0 75 chr3 9172639 9172745 -150427038 + GA-rich Low_complexity Low_complexity 2 99 0 4 654 337 172 0 82 chr3 9172756 9172952 -150426831 + GA-rich Low_complexity Low_complexity 1 180 0 4 654 210 219 15 30 chr3 9172953 9173019 -150426764 + (CAG)n Simple_repeat Simple_repeat 1 65 0 4 654 700 191 7 41 chr3 9173103 9173250 -150426533 - B1_Mur3 SINE Alu -7 142 1 4 654 576 212 45 89 chr3 9173322 9173524 -150426259 - MER53 DNA hAT 0 193 1 4 654 340 222 57 104 chr3 9174693 9174863 -150424920 + B1F2 SINE Alu 15 149 0 4 81 852 70 145 15 chr3 9175011 9175142 -150424641 - B1_Mus1 SINE Alu 0 148 1 4 655 22 0 0 0 chr3 9175146 9175168 -150424615 + AT_rich Low_complexity Low_complexity 1 22 0 4 655 1174 43 0 0 chr3 9175207 9175345 -150424438 + B1_Mus2 SINE Alu 1 138 -9 4 655 393 39 0 0 chr3 9175345 9175396 -150424387 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 4 655 782 225 19 37 chr3 9175428 9175630 -150424153 + B3 SINE B2 1 192 -1 4 655 671 280 13 0 chr3 9175722 9175879 -150423904 + RSINE1 SINE B4 7 165 0 4 655 404 321 25 0 chr3 9175965 9176127 -150423656 + L1ME3A LINE L1 5403 5568 -594 4 655 791 127 96 15 chr3 9176270 9176406 -150423377 - B1_Mur2 SINE Alu -1 148 2 4 655 283 314 98 26 chr3 9176430 9176623 -150423160 + L1ME3A LINE L1 5883 6089 -84 4 655 386 304 123 28 chr3 9176903 9177228 -150422555 - L1M2 LINE L1 -2528 3615 3260 4 655 3783 35 0 2 chr3 9177259 9177715 -150422068 - MT-int LTR MaLR -77 1021 567 4 655 276 133 0 0 chr3 9177715 9177760 -150422023 - L1MD LINE L1 -2919 3227 3183 4 655 225 200 0 0 chr3 9178348 9178393 -150421390 + T-rich Low_complexity Low_complexity 1 45 0 4 655 1097 64 43 0 chr3 9178393 9178533 -150421250 - B1_Mus2 SINE Alu 0 147 2 4 655 846 98 0 0 chr3 9178750 9178872 -150420911 + (GAAA)n Simple_repeat Simple_repeat 4 125 0 4 655 1079 178 78 19 chr3 9179232 9179438 -150420345 + URR1B DNA MER1_type 6 223 -2 4 655 324 64 0 0 chr3 9180450 9180497 -150419286 + (CAGA)n Simple_repeat Simple_repeat 2 48 0 4 655 342 268 146 32 chr3 9180568 9180815 -150418968 - B4A SINE B4 -16 276 2 4 655 23 0 0 0 chr3 9180819 9180842 -150418941 + AT_rich Low_complexity Low_complexity 1 23 0 4 655 238 325 12 12 chr3 9181007 9181088 -150418695 + ID4 SINE ID 3 83 0 4 655 209 331 47 47 chr3 9182261 9182388 -150417395 + L2b LINE L2 3029 3155 -232 4 655 402 261 28 56 chr3 9182437 9182579 -150417204 - B4 SINE B4 -154 138 1 4 655 307 294 94 63 chr3 9182593 9182720 -150417063 - ID_B1 SINE B4 0 224 94 4 655 314 316 153 56 chr3 9182885 9183029 -150416754 - RSINE1 SINE B4 -5 160 3 4 655 277 248 121 60 chr3 9183053 9183169 -150416614 + L2b LINE L2 3276 3426 0 4 655 743 183 254 0 chr3 9183502 9183671 -150416112 + B3 SINE B2 1 212 -4 4 655 887 161 0 32 chr3 9184769 9184923 -150414860 - B1_Mur1 SINE Alu 0 149 1 4 655 663 237 43 0 chr3 9184948 9185087 -150414696 + ID_B1 SINE B4 80 224 0 4 655 1486 58 16 0 chr3 9185171 9185361 -150414422 + B2_Mm1a SINE B2 1 193 0 4 655 207 105 26 0 chr3 9185362 9185400 -150414383 + (TAAA)n Simple_repeat Simple_repeat 3 41 0 4 655 180 0 0 0 chr3 9185485 9185505 -150414278 + (A)n Simple_repeat Simple_repeat 1 20 0 4 655 516 72 0 0 chr3 9185902 9185971 -150413812 + (TC)n Simple_repeat Simple_repeat 2 70 0 4 655 1123 79 0 0 chr3 9185988 9186127 -150413656 - B1_Mus1 SINE Alu -9 139 1 4 655 234 0 0 0 chr3 9186135 9186161 -150413622 + (T)n Simple_repeat Simple_repeat 1 26 0 4 655 602 259 29 7 chr3 9186202 9186338 -150413445 + ID_B1 SINE B4 82 220 -4 4 655 424 230 51 19 chr3 9186462 9186574 -150413209 - PB1D10 SINE Alu 0 117 1 4 655 252 86 0 0 chr3 9186579 9186614 -150413169 + (TCTG)n Simple_repeat Simple_repeat 2 36 0 4 655 345 261 214 43 chr3 9186614 9186754 -150413029 - RSINE1 SINE B4 0 165 2 4 655 1365 84 10 20 chr3 9187174 9187369 -150412414 - B2_Mm1t SINE B2 0 193 1 4 655 324 202 25 25 chr3 9187398 9187479 -150412304 - PB1D9 SINE Alu 0 120 40 4 655 391 272 0 1 chr3 9187491 9187580 -150412203 - B1F SINE Alu -50 99 12 4 655 247 277 80 7 chr3 9187533 9187610 -150412173 - ID_B1 SINE B4 -149 143 68 4 655 243 0 0 0 chr3 9187939 9187966 -150411817 + (CA)n Simple_repeat Simple_repeat 1 27 0 4 655 217 370 0 12 chr3 9188000 9188082 -150411701 - B4 SINE B4 -165 127 47 4 655 230 271 72 10 chr3 9188136 9188233 -150411550 - L3 LINE CR1 -95 4394 4292 5 655 500 286 20 54 chr3 9188253 9188401 -150411382 - RSINE1 SINE B4 0 165 23 5 655 237 182 0 0 chr3 9188540 9188595 -150411188 + CT-rich Low_complexity Low_complexity 2 56 0 5 655 1107 303 3 3 chr3 9188668 9188953 -150410830 - B4 SINE B4 -5 287 3 5 655 190 275 28 42 chr3 9189232 9189304 -150410479 - L3 LINE CR1 -566 3923 3853 5 655 303 283 10 52 chr3 9190094 9190191 -150409592 + B4A SINE B4 107 199 -93 5 655 748 170 21 21 chr3 9190514 9190658 -150409125 - B1_Mur2 SINE Alu -5 144 1 5 655 379 270 40 0 chr3 9190725 9190825 -150408958 - L1MA6 LINE L1 -84 6216 6113 5 655 1244 34 0 7 chr3 9190893 9191041 -150408742 + B1_Mm SINE Alu 1 147 0 5 655 820 157 150 6 chr3 9191056 9191229 -150408554 + MTC LTR MaLR 196 393 -28 5 655 188 79 53 0 chr3 9191229 9191267 -150408516 + (GTTTG)n Simple_repeat Simple_repeat 5 44 0 5 655 1227 49 0 0 chr3 9191267 9191411 -150408372 - B1_Mus2 SINE Alu -3 144 1 5 655 727 255 189 35 chr3 9191632 9191879 -150407904 + ORR1D2 LTR MaLR 1 279 -91 5 655 1202 182 23 5 chr3 9191879 9192100 -150407683 + URR1B DNA MER1_type 1 225 0 5 655 727 255 189 35 chr3 9192100 9192165 -150407618 + ORR1D2 LTR MaLR 280 361 -9 5 655 509 149 246 34 chr3 9192283 9192401 -150407382 - B1_Mur2 SINE Alu -6 143 1 5 655 469 252 33 16 chr3 9192426 9192547 -150407236 - PB1 SINE Alu -2 125 3 5 655 288 0 0 0 chr3 9192586 9192618 -150407165 + (TG)n Simple_repeat Simple_repeat 2 33 0 5 655 910 267 103 71 chr3 9192624 9193289 -150406494 + L1MD LINE L1 5081 5761 -598 5 655 211 214 0 0 chr3 9193353 9193395 -150406388 + CT-rich Low_complexity Low_complexity 1 42 0 5 655 496 241 0 18 chr3 9193494 9193604 -150406179 - PB1D7 SINE Alu -8 112 5 5 655 303 140 0 0 chr3 9193645 9193695 -150406088 + (TCC)n Simple_repeat Simple_repeat 3 52 0 5 655 402 250 11 32 chr3 9193764 9193859 -150405924 + RSINE1 SINE B4 25 117 -48 5 655 318 50 0 0 chr3 9193863 9193903 -150405880 + (CA)n Simple_repeat Simple_repeat 1 40 0 5 655 320 158 18 0 chr3 9193903 9193960 -150405823 + B1_Mur2 SINE Alu 92 149 0 5 655 3204 43 5 55 chr3 9194131 9194548 -150405235 + MTA_Mm LTR MaLR 1 396 0 5 655 230 333 13 13 chr3 9194701 9194780 -150405003 - Tigger12A DNA MER2_type -3 788 710 5 655 231 61 0 0 chr3 9194817 9194850 -150404933 + (T)n Simple_repeat Simple_repeat 1 33 0 5 655 188 156 0 62 chr3 9195189 9195237 -150404546 + CT-rich Low_complexity Low_complexity 6 50 0 5 655 472 263 18 0 chr3 9195241 9195355 -150404428 - B3A SINE B2 -82 116 1 5 655 206 267 11 0 chr3 9196154 9196244 -150403539 + CT-rich Low_complexity Low_complexity 1 91 0 5 655 261 0 0 0 chr3 9196299 9196328 -150403455 + (CA)n Simple_repeat Simple_repeat 2 30 0 5 655 299 284 31 21 chr3 9197056 9197153 -150402630 + B4A SINE B4 4 101 -191 5 655 502 285 69 0 chr3 9197162 9197295 -150402488 + B3A SINE B2 39 180 -18 5 655 438 20 0 0 chr3 9197295 9197346 -150402437 + (CA)n Simple_repeat Simple_repeat 2 52 0 5 655 1292 100 21 10 chr3 9197392 9197584 -150402199 + B2_Mm2 SINE B2 2 195 0 5 655 717 198 9 0 chr3 9197598 9197714 -150402069 + B4A SINE B4 103 219 -73 5 655 258 156 0 0 chr3 9197714 9197759 -150402024 + (TAG)n Simple_repeat Simple_repeat 3 47 0 5 655 230 250 68 27 chr3 9197771 9197845 -150401938 + B4A SINE B4 216 292 0 5 655 670 226 8 8 chr3 9198407 9198541 -150401242 + ID_B1 SINE B4 84 217 -7 5 655 398 187 9 180 chr3 9199256 9199367 -150400416 - B1F2 SINE Alu -12 137 46 5 655 310 325 148 7 chr3 9199431 9199586 -150400197 - B4 SINE B4 -113 179 3 5 655 227 268 89 0 chr3 9199832 9199888 -150399895 - ID4 SINE ID 0 83 23 5 655 249 254 164 0 chr3 9200110 9200177 -150399606 - MADE2 DNA Mariner 0 80 3 5 655 312 27 0 0 chr3 9200616 9200653 -150399130 + (GGA)n Simple_repeat Simple_repeat 2 38 0 5 655 409 333 32 0 chr3 9200717 9200843 -150398940 + ID_B1 SINE B4 87 216 -8 5 655 385 281 74 52 chr3 9200909 9201044 -150398739 + RSINE1 SINE B4 3 140 -25 5 655 748 235 153 14 chr3 9201091 9201307 -150398476 + Lx8 LINE L1 7047 7292 -181 5 655 282 29 0 0 chr3 9201309 9201344 -150398439 + (TG)n Simple_repeat Simple_repeat 2 36 0 5 655 452 286 26 9 chr3 9201345 9201458 -150398325 + B3A SINE B2 61 175 -23 5 655 333 0 0 0 chr3 9201656 9201693 -150398090 + (TG)n Simple_repeat Simple_repeat 1 37 0 5 655 224 246 0 44 chr3 9201710 9201778 -150398005 + MIR SINE MIR 105 169 -93 5 655 21 36 0 0 chr3 9202806 9202834 -150396949 + GC_rich Low_complexity Low_complexity 1 28 0 5 655 308 254 0 15 chr3 9203023 9203091 -150396692 - ID4 SINE ID -13 70 4 5 655 369 299 213 15 chr3 9204882 9205079 -150394704 + RMER15 LTR ERVL 337 572 -3 5 655 556 197 120 0 chr3 9205137 9205254 -150394529 + B1_Mus2 SINE Alu 2 132 -15 5 655 299 98 0 38 chr3 9205256 9205309 -150394474 + (GGGA)n Simple_repeat Simple_repeat 1 51 0 5 655 207 88 0 0 chr3 9205453 9205487 -150394296 + (TTAG)n Simple_repeat Simple_repeat 3 36 0 5 655 437 184 45 11 chr3 9205488 9205576 -150394207 + ID_B1 SINE B4 122 212 -12 5 655 375 241 26 43 chr3 9205674 9205791 -150393992 + PB1D7 SINE Alu 5 119 -1 5 655 358 225 0 0 chr3 9206205 9206285 -150393498 + B1_Mur3 SINE Alu 1 80 -69 5 655 324 250 37 62 chr3 9206600 9206645 -150393138 - L1MEg LINE L1 -4125 1959 1916 5 655 784 164 14 41 chr3 9206645 9206791 -150392992 - B1_Mur3 SINE Alu -3 146 5 5 655 324 250 37 62 chr3 9206791 9206826 -150392957 - L1MEg LINE L1 -4169 1915 1881 5 655 623 155 0 68 chr3 9206829 9206947 -150392836 - B1_Mur3 SINE Alu 0 149 40 5 655 291 348 17 69 chr3 9206888 9206936 -150392847 - B4A SINE B4 -67 225 121 5 655 386 226 0 70 chr3 9206936 9207036 -150392747 - B1_Mus1 SINE Alu -55 93 1 5 655 291 348 17 69 chr3 9207036 9207061 -150392722 - B4A SINE B4 -67 120 62 5 655 230 274 0 0 chr3 9207322 9207373 -150392410 + B1_Mur1 SINE Alu 56 106 -43 5 655 236 293 0 0 chr3 9207928 9207986 -150391797 + (CATATA)n Simple_repeat Simple_repeat 5 62 0 5 655 1803 180 29 14 chr3 9208481 9208830 -150390953 - ORR1D1 LTR MaLR 0 374 21 5 655 508 221 133 0 chr3 9208978 9209091 -150390692 + B1F SINE Alu 13 140 -9 5 655 475 241 74 41 chr3 9208984 9209105 -150390678 + ID_B1 SINE B4 100 224 0 5 655 956 244 99 46 chr3 9209118 9209440 -150390343 + MTD LTR MaLR 76 399 -20 5 655 758 111 0 33 chr3 9209609 9209730 -150390053 + B1_Mus1 SINE Alu 7 123 -25 5 655 861 65 220 38 chr3 9209821 9209980 -150389803 - B2_Mm2 SINE B2 -6 189 2 5 655 283 318 46 9 chr3 9210050 9210158 -150389625 - Lx8 LINE L1 -300 7173 7062 5 655 953 133 14 0 chr3 9210194 9210337 -150389446 - B1_Mus2 SINE Alu -1 146 2 5 655 260 379 13 7 chr3 9210485 9210639 -150389144 - Lx8 LINE L1 -612 6861 6707 5 655 653 92 0 40 chr3 9210664 9210788 -150388995 + (TCCC)n Simple_repeat Simple_repeat 2 120 0 5 655 1352 270 137 27 chr3 9210810 9211293 -150388490 - Lx8 LINE L1 -817 6656 6121 5 655 507 211 0 0 chr3 9211367 9211523 -150388260 + CT-rich Low_complexity Low_complexity 1 156 0 5 655 966 56 80 0 chr3 9211906 9212031 -150387752 + B1_Mus1 SINE Alu 2 136 -12 5 655 374 39 19 0 chr3 9212031 9212083 -150387700 + (TAAA)n Simple_repeat Simple_repeat 2 54 0 5 655 653 181 0 0 chr3 9212083 9212188 -150387595 + PB1D9 SINE Alu 2 106 -14 5 655 255 61 0 0 chr3 9212188 9212221 -150387562 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 5 655 792 43 265 0 chr3 9212976 9213093 -150386690 + B1_Mus1 SINE Alu 1 148 0 5 655 1714 26 0 0 chr3 9213117 9213309 -150386474 + B2_Mm1t SINE B2 1 192 -1 5 655 415 273 68 54 chr3 9213834 9213981 -150385802 + B1F SINE Alu 1 149 0 5 655 2361 193 7 5 chr3 9214308 9214719 -150385064 - MTC LTR MaLR 0 421 10 5 655 1661 171 138 35 chr3 9215059 9215458 -150384325 - RMER10A LTR ERVL -2 440 1 5 655 231 298 246 0 chr3 9216629 9216677 -150383106 - ID_B1 SINE B4 -80 144 91 5 655 249 33 0 0 chr3 9216677 9216707 -150383076 + (TCTG)n Simple_repeat Simple_repeat 4 33 0 5 655 231 298 246 0 chr3 9216707 9216772 -150383011 - ID_B1 SINE B4 -134 90 4 5 655 263 326 31 10 chr3 9216783 9216879 -150382904 - PB1D10 SINE Alu -9 108 11 5 655 368 209 70 0 chr3 9216958 9217044 -150382739 - PB1D9 SINE Alu -19 101 10 5 655 343 235 24 24 chr3 9217305 9217388 -150382395 + B1F SINE Alu 18 100 -49 5 655 405 0 0 0 chr3 9217393 9217438 -150382345 + (TC)n Simple_repeat Simple_repeat 1 45 0 5 655 507 56 0 0 chr3 9217438 9217508 -150382275 + (CA)n Simple_repeat Simple_repeat 1 71 0 5 655 359 263 0 0 chr3 9218711 9218787 -150380996 + ID_B1 SINE B4 75 150 -74 5 655 959 219 49 19 chr3 9219158 9219363 -150380420 - B3 SINE B2 -5 211 1 5 655 258 164 107 18 chr3 9219391 9219447 -150380336 - tRNA-Ala-GCA tRNA tRNA -14 61 1 5 655 1230 174 210 0 chr3 9219582 9219887 -150379896 - ORR1D1 LTR MaLR 0 374 6 5 655 1379 159 0 9 chr3 9220185 9220407 -150379376 + URR1B DNA MER1_type 6 225 0 5 655 1164 68 0 26 chr3 9220493 9220644 -150379139 + B1_Mus1 SINE Alu 2 148 0 5 655 22 0 0 0 chr3 9220651 9220673 -150379110 + AT_rich Low_complexity Low_complexity 1 22 0 5 655 249 322 30 76 chr3 9221088 9221105 -150378678 - B4A SINE B4 -106 186 142 5 655 385 195 92 0 chr3 9221105 9221192 -150378591 - B1_Mm SINE Alu -51 96 2 5 655 546 326 97 4 chr3 9221192 9221410 -150378373 - Tigger7 DNA MER2_type -2137 354 116 5 655 249 322 30 76 chr3 9221192 9221219 -150378564 - B4A SINE B4 -106 141 62 5 655 509 214 0 28 chr3 9221403 9221509 -150378274 + PB1D7 SINE Alu 18 120 0 6 655 241 281 121 81 chr3 9221874 9221998 -150377785 + MamRep1161 DNA TcMar 14 142 -815 6 655 320 224 0 50 chr3 9222017 9222097 -150377686 + PB1D10 SINE Alu 40 115 -2 6 655 369 0 0 0 chr3 9222203 9222244 -150377539 + (TG)n Simple_repeat Simple_repeat 1 41 0 6 655 584 174 131 36 chr3 9222248 9222385 -150377398 - RSINE1 SINE B4 -14 151 2 6 655 862 146 0 7 chr3 9222482 9222620 -150377163 + B1_Mus2 SINE Alu 1 137 -10 6 655 356 173 13 13 chr3 9222666 9222742 -150377041 - ID_B1 SINE B4 0 224 149 6 655 250 265 57 29 chr3 9222742 9222769 -150377014 - B1F2 SINE Alu 0 147 42 6 655 420 273 7 36 chr3 9223264 9223401 -150376382 + ID_B1 SINE B4 90 222 -2 6 655 240 211 19 0 chr3 9224493 9224545 -150375238 - B1_Mm SINE Alu -8 139 87 6 655 1192 62 0 0 chr3 9224583 9224729 -150375054 - B1_Mus2 SINE Alu -1 146 1 6 655 536 157 107 36 chr3 9224729 9224830 -150374953 - B1_Mur3 SINE Alu -9 111 1 6 655 261 0 0 0 chr3 9224997 9225026 -150374757 + (TGAA)n Simple_repeat Simple_repeat 4 32 0 6 655 565 217 23 0 chr3 9225320 9225449 -150374334 - B1F1 SINE Alu -7 142 11 6 655 284 193 104 112 chr3 9225341 9225475 -150374308 - MT2B LTR ERVL -326 275 143 6 655 446 268 81 0 chr3 9225567 9225690 -150374093 - RSINE1 SINE B4 -29 136 4 6 655 383 225 10 2 chr3 9225692 9225778 -150374005 - PB1D9 SINE Alu -3 124 33 6 655 206 0 69 0 chr3 9225832 9225861 -150373922 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 6 655 1105 79 0 0 chr3 9225861 9226000 -150373783 - B1_Mus1 SINE Alu -9 139 1 6 655 327 272 0 0 chr3 9226064 9226145 -150373638 + PB1D7 SINE Alu 5 85 -35 6 655 216 0 0 0 chr3 9226158 9226182 -150373601 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 6 655 816 204 0 0 chr3 9226182 9226319 -150373464 - B1_Mur4 SINE Alu -13 137 1 6 655 675 278 56 23 chr3 9226542 9226756 -150373027 + ID_B1 SINE B4 3 223 -1 6 655 1080 37 0 7 chr3 9226807 9226944 -150372839 + B1_Mus2 SINE Alu 1 136 -11 6 655 186 43 0 0 chr3 9226944 9226967 -150372816 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 6 655 595 238 152 20 chr3 9227433 9227630 -150372153 - ID_B1 SINE B4 0 224 2 6 655 257 246 0 0 chr3 9228019 9228084 -150371699 + T-rich Low_complexity Low_complexity 1 65 0 6 655 1215 34 0 20 chr3 9228084 9228234 -150371549 - B1_Mm SINE Alu 0 147 1 6 655 648 189 0 112 chr3 9228245 9228406 -150371377 - ID_B1 SINE B4 0 224 82 6 655 293 350 54 48 chr3 9228731 9228899 -150370884 + B4A SINE B4 2 170 -122 6 655 280 293 24 0 chr3 9228927 9229009 -150370774 + RSINE1 SINE B4 78 161 -4 6 655 333 0 0 0 chr3 9229023 9229060 -150370723 + (TC)n Simple_repeat Simple_repeat 1 37 0 6 655 306 0 0 0 chr3 9229060 9229093 -150370690 + (CA)n Simple_repeat Simple_repeat 1 34 0 6 655 639 154 8 25 chr3 9229189 9229309 -150370474 + B3 SINE B2 9 126 -90 6 655 393 297 165 12 chr3 9229686 9229935 -150369848 + L3b LINE CR1 1 287 -195 6 655 284 309 12 0 chr3 9230024 9230105 -150369678 + ID4 SINE ID 2 83 0 6 655 1645 31 0 20 chr3 9230225 9230421 -150369362 + B2_Mm1a SINE B2 2 193 0 6 655 233 205 0 0 chr3 9230468 9230507 -150369276 + polypurine Low_complexity Low_complexity 2 40 0 6 655 766 180 0 33 chr3 9230507 9230691 -150369092 + GA-rich Low_complexity Low_complexity 1 178 0 6 655 800 29 0 19 chr3 9230980 9231084 -150368699 + (TTCCC)n Simple_repeat Simple_repeat 5 106 0 6 655 405 0 0 0 chr3 9231093 9231138 -150368645 + (TTTTG)n Simple_repeat Simple_repeat 3 47 0 6 655 679 164 17 17 chr3 9231138 9231256 -150368527 - B1_Mm SINE Alu -24 123 6 6 655 492 129 0 0 chr3 9231494 9231568 -150368215 + (TTTC)n Simple_repeat Simple_repeat 2 75 0 6 655 1213 54 0 0 chr3 9231568 9231716 -150368067 - B1_Mus1 SINE Alu 0 148 1 6 655 492 129 0 0 chr3 9231716 9231726 -150368057 + (TTTC)n Simple_repeat Simple_repeat 4 13 0 6 655 458 269 84 8 chr3 9231771 9231902 -150367881 + B1_Mur2 SINE Alu 3 143 -6 6 655 2974 242 177 9 chr3 9232005 9232926 -150366857 + Lx8 LINE L1 6133 7208 -265 6 655 536 211 113 0 chr3 9233213 9233346 -150366437 + B1_Mus1 SINE Alu 1 148 0 6 655 228 220 43 32 chr3 9233602 9233696 -150366087 + (TATATG)n Simple_repeat Simple_repeat 6 100 0 6 655 1259 150 36 27 chr3 9233960 9234180 -150365603 + URR1A DNA MER1_type 4 225 -1 6 655 1543 199 77 57 chr3 9234200 9234917 -150364866 + RMER19B LTR ERVK 1 890 -12 6 655 192 40 0 0 chr3 9234997 9235022 -150364761 + (GA)n Simple_repeat Simple_repeat 2 26 0 6 655 207 0 0 0 chr3 9235370 9235393 -150364390 + (CTAGT)n Simple_repeat Simple_repeat 5 27 0 6 655 2309 157 32 15 chr3 9235422 9235824 -150363959 - MTC LTR MaLR -8 413 5 6 655 468 0 0 0 chr3 9235826 9235878 -150363905 + (TCC)n Simple_repeat Simple_repeat 1 52 0 6 655 443 268 20 27 chr3 9236162 9236308 -150363475 - MIR SINE MIR -25 237 93 6 655 873 0 0 0 chr3 9236642 9236739 -150363044 + (GA)n Simple_repeat Simple_repeat 2 98 0 6 655 341 250 71 44 chr3 9236978 9237091 -150362692 - PB1D10 SINE Alu 0 117 2 6 655 346 241 222 0 chr3 9238326 9238434 -150361349 + B1F SINE Alu 3 134 -15 6 655 1284 174 149 0 chr3 9238434 9238709 -150361074 + Lx5 LINE L1 6735 7050 0 6 655 278 191 78 16 chr3 9238813 9238877 -150360906 - ID4 SINE ID -2 81 14 6 655 542 235 0 0 chr3 9239213 9239311 -150360472 + B1_Mur3 SINE Alu 1 98 -51 6 655 448 272 48 8 chr3 9239434 9239560 -150360223 + ID_B1 SINE B4 92 222 -2 6 655 329 299 10 0 chr3 9240371 9240468 -150359315 + PB1D7 SINE Alu 1 98 -22 6 655 1443 158 33 4 chr3 9240519 9240792 -150358991 - ORR1C1 LTR MaLR -87 291 11 6 655 1009 212 15 15 chr3 9240964 9241165 -150358618 - B3 SINE B2 -11 205 5 6 655 26 0 0 0 chr3 9241182 9241208 -150358575 + AT_rich Low_complexity Low_complexity 1 26 0 6 655 1045 69 0 0 chr3 9241213 9241357 -150358426 + B1_Mus1 SINE Alu 2 145 -3 6 655 881 107 36 0 chr3 9241404 9241544 -150358239 + B1_Mur4 SINE Alu 6 150 0 6 655 405 102 0 0 chr3 9241544 9241603 -150358180 + (A)n Simple_repeat Simple_repeat 1 59 0 6 655 292 304 9 89 chr3 9241665 9241777 -150358006 - RSINE1 SINE B4 -60 105 3 6 655 270 263 221 0 chr3 9241856 9241951 -150357832 - PB1D10 SINE Alu -1 116 1 6 655 330 256 0 44 chr3 9242521 9242611 -150357172 + B1F SINE Alu 13 98 -51 6 655 1140 82 0 0 chr3 9242740 9242887 -150356896 - B1_Mus2 SINE Alu 0 147 1 6 655 384 231 138 0 chr3 9243056 9243186 -150356597 - B1_Mur2 SINE Alu 0 149 2 6 655 355 269 72 29 chr3 9243196 9243334 -150356449 - B1_Mur2 SINE Alu -5 144 1 6 655 398 265 191 12 chr3 9243498 9243666 -150356117 - B3A SINE B2 0 198 1 6 655 258 217 72 0 chr3 9243827 9243896 -150355887 - ID_B1 SINE B4 -73 151 78 6 655 1253 34 0 7 chr3 9243918 9244067 -150355716 - B1_Mus1 SINE Alu 0 148 1 6 655 382 286 86 0 chr3 9244373 9244478 -150355305 + B4 SINE B4 90 203 -89 6 655 1050 91 28 0 chr3 9244489 9244632 -150355151 + B1_Mus2 SINE Alu 1 147 0 6 655 306 0 0 0 chr3 9244745 9244779 -150355004 + (CA)n Simple_repeat Simple_repeat 1 34 0 6 655 201 138 68 17 chr3 9244881 9244940 -150354843 + (TA)n Simple_repeat Simple_repeat 2 63 0 6 655 370 242 175 0 chr3 9245172 9245292 -150354491 + ID_B1 SINE B4 83 223 -1 6 655 266 286 0 0 chr3 9245719 9245782 -150354001 - ID_B1 SINE B4 -70 154 92 6 655 501 281 69 0 chr3 9246609 9246769 -150353014 - ID_B1 SINE B4 0 224 54 6 655 1779 104 36 56 chr3 9246774 9247080 -150352703 - Lx3A LINE L1 -2 6979 6680 6 655 946 91 0 0 chr3 9247091 9247223 -150352560 - B1_Mus1 SINE Alu -7 141 10 6 655 248 244 15 37 chr3 9247124 9247260 -150352523 - ORR1B1-int LTR MaLR -755 754 622 6 655 247 273 11 11 chr3 9247257 9247346 -150352437 - B3A SINE B2 -26 172 84 6 655 432 258 78 10 chr3 9247436 9247576 -150352207 - ID_B1 SINE B4 -62 230 87 6 655 439 232 80 0 chr3 9248415 9248553 -150351230 + B1_Mur2 SINE Alu 1 149 0 6 655 240 152 93 3 chr3 9248577 9248642 -150351141 + PB1D10 SINE Alu 41 115 -5 6 655 234 223 215 37 chr3 9248692 9248799 -150350984 - B3 SINE B2 -12 204 79 6 655 370 186 55 1 chr3 9248949 9249031 -150350752 + B1_Mur2 SINE Alu 40 124 -25 6 655 633 27 0 0 chr3 9249036 9249111 -150350672 + (GAAA)n Simple_repeat Simple_repeat 2 76 0 6 655 1160 44 0 0 chr3 9249114 9249251 -150350532 + B1_Mus2 SINE Alu 1 137 -10 6 655 221 0 0 33 chr3 9249251 9249281 -150350502 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 6 655 342 267 9 79 chr3 9249367 9249481 -150350302 + PB1D7 SINE Alu 8 113 -7 6 655 231 250 20 48 chr3 9250337 9250445 -150349338 + C-rich Low_complexity Low_complexity 44 147 0 6 655 210 71 0 0 chr3 9250445 9250473 -150349310 + (CAGCC)n Simple_repeat Simple_repeat 4 31 0 7 655 231 250 20 48 chr3 9250473 9250511 -150349272 + C-rich Low_complexity Low_complexity 5 43 0 7 655 203 287 6 58 chr3 9250866 9250975 -150348808 + G-rich Low_complexity Low_complexity 5 106 0 7 655 216 67 0 0 chr3 9250975 9251005 -150348778 + (CAGCG)n Simple_repeat Simple_repeat 2 31 0 7 655 180 0 0 0 chr3 9251005 9251025 -150348758 + (CGGGGG)n Simple_repeat Simple_repeat 1 20 0 7 655 203 287 6 58 chr3 9251025 9251088 -150348695 + G-rich Low_complexity Low_complexity 107 168 0 7 655 204 97 0 0 chr3 9251092 9251123 -150348660 + (CGG)n Simple_repeat Simple_repeat 2 32 0 7 655 26 0 0 0 chr3 9251350 9251376 -150348407 + GC_rich Low_complexity Low_complexity 1 26 0 7 655 23 0 0 0 chr3 9251431 9251454 -150348329 + GC_rich Low_complexity Low_complexity 1 23 0 7 655 526 171 73 29 chr3 9253290 9253408 -150346375 - B1_Mur2 SINE Alu -22 125 6 7 655 467 252 52 9 chr3 9254939 9255055 -150344728 + B3 SINE B2 4 124 -92 7 655 232 300 29 0 chr3 9255359 9255429 -150344354 - PB1D10 SINE Alu -5 112 41 7 655 375 175 330 0 chr3 9255472 9255569 -150344214 - B1_Mus2 SINE Alu -17 130 2 7 655 251 328 0 0 chr3 9255584 9255651 -150344132 - BC1_Mm scRNA scRNA -71 81 15 7 655 25 0 0 0 chr3 9255656 9255681 -150344102 + AT_rich Low_complexity Low_complexity 1 25 0 7 655 310 253 72 108 chr3 9255716 9255911 -150343872 - B3A SINE B2 -10 188 1 7 655 342 0 0 0 chr3 9255940 9255978 -150343805 + (TTA)n Simple_repeat Simple_repeat 2 39 0 7 655 1181 48 0 14 chr3 9255984 9256131 -150343652 - B1_Mus2 SINE Alu -2 145 1 7 655 566 208 8 31 chr3 9256269 9256398 -150343385 - B1_Mur1 SINE Alu -8 141 16 7 655 229 265 0 29 chr3 9256720 9256790 -150342993 - PB1D10 SINE Alu -32 85 18 7 655 189 171 0 0 chr3 9256840 9256875 -150342908 + CT-rich Low_complexity Low_complexity 2 36 0 7 655 216 0 0 0 chr3 9257175 9257199 -150342584 + (TG)n Simple_repeat Simple_repeat 2 25 0 7 655 758 68 248 0 chr3 9258181 9258298 -150341485 + B1_Mus1 SINE Alu 1 146 -2 7 655 662 172 0 54 chr3 9258325 9258454 -150341329 + B1_Mur4 SINE Alu 2 123 -27 7 655 525 187 0 0 chr3 9258455 9258594 -150341189 + (CA)n Simple_repeat Simple_repeat 2 140 0 7 655 422 221 111 39 chr3 9258667 9258798 -150340985 + B1_Mur1 SINE Alu 5 149 0 7 655 273 241 121 0 chr3 9259573 9259656 -150340127 - B3A SINE B2 -105 93 1 7 655 565 274 13 58 chr3 9259676 9259831 -150339952 - ID_B1 SINE B4 -64 160 13 7 655 300 83 0 0 chr3 9259965 9260013 -150339770 + (CA)n Simple_repeat Simple_repeat 2 49 0 7 655 567 174 31 0 chr3 9260189 9260287 -150339496 + PB1D9 SINE Alu 1 101 -19 7 655 324 266 25 0 chr3 9260400 9260479 -150339304 - ID_B1 SINE B4 -53 171 91 7 655 1548 42 16 5 chr3 9260925 9261115 -150338668 - B2_Mm2 SINE B2 -3 192 1 7 655 479 248 8 8 chr3 9261153 9261275 -150338508 - B3 SINE B2 -3 213 92 7 655 758 68 48 56 chr3 9262126 9262251 -150337532 + B1_Mm SINE Alu 1 124 -23 7 655 556 214 23 65 chr3 9263237 9263427 -150336356 - B3 SINE B2 -10 185 3 7 655 863 58 141 0 chr3 9263997 9264118 -150335665 - B1_Mus2 SINE Alu -8 139 2 7 655 612 40 0 0 chr3 9264255 9264330 -150335453 + (TTTC)n Simple_repeat Simple_repeat 4 78 0 7 655 34 24 0 0 chr3 9264469 9264510 -150335273 + AT_rich Low_complexity Low_complexity 1 41 0 7 655 363 252 17 51 chr3 9266472 9266589 -150333194 + B1_Mur3 SINE Alu 5 117 -32 7 655 237 65 0 0 chr3 9266687 9266718 -150333065 + (TC)n Simple_repeat Simple_repeat 2 32 0 7 655 276 30 0 0 chr3 9266719 9266752 -150333031 + (TG)n Simple_repeat Simple_repeat 2 34 0 7 655 344 264 40 32 chr3 9266924 9267049 -150332734 - ID_B1 SINE B4 -9 215 90 7 655 631 124 106 0 chr3 9268131 9268244 -150331539 - B1_Mus1 SINE Alu -5 143 19 7 655 367 209 56 28 chr3 9268151 9268259 -150331524 - MT2B LTR ERVL -323 278 168 7 655 414 269 135 23 chr3 9268352 9268485 -150331298 + B3 SINE B2 42 189 -27 7 655 556 220 89 22 chr3 9268547 9268682 -150331101 - B1_Mur1 SINE Alu -5 144 1 7 655 23 0 0 0 chr3 9270112 9270135 -150329648 + AT_rich Low_complexity Low_complexity 1 23 0 7 655 479 296 22 0 chr3 9270322 9270457 -150329326 - RSINE1 SINE B4 -27 138 1 7 655 273 29 0 0 chr3 9270719 9270753 -150329030 + (TG)n Simple_repeat Simple_repeat 1 34 0 7 655 316 209 202 32 chr3 9270758 9270852 -150328931 - RSINE1 SINE B4 -52 113 4 7 655 213 65 0 0 chr3 9271383 9271414 -150328369 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 7 655 23 0 0 0 chr3 9271455 9271478 -150328305 + AT_rich Low_complexity Low_complexity 1 23 0 7 655 21 36 0 0 chr3 9271625 9271653 -150328130 + AT_rich Low_complexity Low_complexity 1 28 0 7 655 189 0 0 0 chr3 9271938 9271959 -150327824 + (CTTG)n Simple_repeat Simple_repeat 1 21 0 7 655 245 309 31 21 chr3 9273051 9273147 -150326636 - PB1D10 SINE Alu -7 110 14 7 655 1060 130 120 75 chr3 9273363 9273630 -150326153 + RMER6B LTR ERVK 1 279 -182 7 655 678 266 88 21 chr3 9273641 9273833 -150325950 - B3 SINE B2 -10 206 2 7 655 199 26 24 73 chr3 9274016 9274057 -150325726 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 7 655 1214 48 0 0 chr3 9274060 9274206 -150325577 - B1_Mm SINE Alu -1 146 1 7 655 275 233 137 0 chr3 9274301 9274374 -150325409 - ID4_ SINE ID 0 83 1 7 655 240 59 0 0 chr3 9274865 9274899 -150324884 + (TCTG)n Simple_repeat Simple_repeat 1 34 0 7 655 180 0 0 0 chr3 9275476 9275496 -150324287 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 7 655 1177 50 0 0 chr3 9275500 9275641 -150324142 - B1_Mm SINE Alu -5 142 2 7 655 1437 45 17 17 chr3 9275643 9275823 -150323960 - B2_Mm2 SINE B2 -15 180 1 7 655 324 167 50 0 chr3 9277618 9277678 -150322105 + B3 SINE B2 35 97 -119 7 655 23 54 0 0 chr3 9278586 9278623 -150321160 + AT_rich Low_complexity Low_complexity 1 37 0 7 655 466 134 19 67 chr3 9279233 9279337 -150320446 + ID_B1 SINE B4 125 223 -1 7 655 207 204 0 0 chr3 9279445 9279489 -150320294 + (TA)n Simple_repeat Simple_repeat 2 45 0 7 655 26 0 0 0 chr3 9279515 9279541 -150320242 + AT_rich Low_complexity Low_complexity 1 26 0 7 655 206 108 0 51 chr3 9281476 9281515 -150318268 + T-rich Low_complexity Low_complexity 5 41 0 7 655 25 65 0 0 chr3 9283048 9283094 -150316689 + AT_rich Low_complexity Low_complexity 1 46 0 7 655 32 43 0 0 chr3 9283857 9283903 -150315880 + AT_rich Low_complexity Low_complexity 1 46 0 7 655 387 0 0 0 chr3 9284079 9284122 -150315661 + (TG)n Simple_repeat Simple_repeat 2 44 0 7 655 317 229 164 11 chr3 9284496 9284647 -150315136 - MIRb SINE MIR -94 174 1 7 655 928 8 0 16 chr3 9286009 9286131 -150313652 + B1_Mm SINE Alu 28 147 0 7 655 180 0 0 0 chr3 9286495 9286515 -150313268 + (TA)n Simple_repeat Simple_repeat 2 21 0 7 655 508 234 50 21 chr3 9286550 9286690 -150313093 + B1_Mur2 SINE Alu 6 149 0 7 655 276 257 9 45 chr3 9287540 9287650 -150312133 - PB1D10 SINE Alu -5 112 7 7 655 264 218 18 0 chr3 9288146 9288201 -150311582 - PB1D7 SINE Alu -64 56 1 7 655 361 179 30 0 chr3 9288892 9288959 -150310824 + ID4_ SINE ID 1 69 -14 7 655 404 192 141 0 chr3 9289003 9289102 -150310681 + B3 SINE B2 1 113 -103 7 655 399 218 35 0 chr3 9289458 9289545 -150310238 + PB1 SINE Alu 13 102 -25 7 655 507 265 67 56 chr3 9289835 9290015 -150309768 + ID_B1 SINE B4 2 183 -109 7 655 221 267 0 0 chr3 9290720 9290780 -150309003 + T-rich Low_complexity Low_complexity 1 60 0 7 655 642 142 86 36 chr3 9290780 9290919 -150308864 - B1_Mur2 SINE Alu 0 149 4 7 655 195 42 0 0 chr3 9290978 9291002 -150308781 + (TG)n Simple_repeat Simple_repeat 1 24 0 7 655 536 286 137 9 chr3 9291068 9291287 -150308496 - B4A SINE B4 -43 249 3 7 655 255 23 0 64 chr3 9291287 9291334 -150308449 + (TTTTTG)n Simple_repeat Simple_repeat 2 45 0 7 655 24 32 0 0 chr3 9291388 9291419 -150308364 + AT_rich Low_complexity Low_complexity 1 31 0 7 655 411 263 0 20 chr3 9291527 9291628 -150308155 + PB1D10 SINE Alu 1 99 -18 7 655 876 67 0 0 chr3 9291628 9291748 -150308035 + (TAGA)n Simple_repeat Simple_repeat 1 120 0 7 655 3526 23 2 0 chr3 9292374 9292769 -150307014 + MTA_Mm LTR MaLR 1 396 0 7 655 295 309 46 9 chr3 9292793 9292901 -150306882 - B1F SINE Alu -37 112 1 7 655 332 267 9 47 chr3 9293493 9293599 -150306184 - RSINE1 SINE B4 -57 108 7 7 655 208 0 0 59 chr3 9294018 9294052 -150305731 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 7 655 382 132 205 0 chr3 9294054 9294137 -150305646 - B1_Mus2 SINE Alu -8 139 40 7 655 282 138 17 33 chr3 9294093 9294153 -150305630 - RLTR25B LTR ERVK -543 485 427 7 655 754 196 55 106 chr3 9294242 9294459 -150305324 - B3 SINE B2 0 216 11 7 655 274 243 114 0 chr3 9295234 9295304 -150304479 - ID_B1 SINE B4 -1 223 146 7 655 467 174 65 11 chr3 9295511 9295604 -150304179 - B1_Mur4 SINE Alu -12 138 41 7 655 194 108 54 0 chr3 9296069 9296106 -150303677 + CT-rich Low_complexity Low_complexity 5 43 0 8 655 660 77 0 0 chr3 9296126 9296217 -150303566 + (TTCC)n Simple_repeat Simple_repeat 3 93 0 8 655 637 97 272 0 chr3 9296413 9296527 -150303256 - B1_Mus1 SINE Alu -1 147 3 8 655 1190 68 0 0 chr3 9296558 9296704 -150303079 + B1_Mus2 SINE Alu 2 147 0 8 655 228 143 0 0 chr3 9297287 9297329 -150302454 + (TA)n Simple_repeat Simple_repeat 2 43 0 8 655 1152 29 0 0 chr3 9298033 9298170 -150301613 + B1_Mus1 SINE Alu 1 137 -11 8 655 285 75 0 0 chr3 9298170 9298210 -150301573 + (CAAA)n Simple_repeat Simple_repeat 2 41 0 8 655 63 51 0 0 chr3 9298671 9298769 -150301014 + AT_rich Low_complexity Low_complexity 1 98 0 8 655 371 266 14 86 chr3 9298795 9298935 -150300848 - B1F SINE Alu 0 149 20 8 655 227 213 66 0 chr3 9298941 9299002 -150300781 + B3A SINE B2 1 65 -133 8 655 324 0 0 0 chr3 9299030 9299066 -150300717 + (TC)n Simple_repeat Simple_repeat 2 37 0 8 655 243 0 0 0 chr3 9299066 9299092 -150300691 + (TG)n Simple_repeat Simple_repeat 2 28 0 8 655 937 135 12 12 chr3 9299134 9299306 -150300477 + GA-rich Low_complexity Low_complexity 2 173 0 8 655 276 191 48 0 chr3 9299358 9299421 -150300362 - ID4 SINE ID -14 69 4 8 655 533 216 8 41 chr3 9299603 9299724 -150300059 - B1_Mur4 SINE Alu -9 141 25 8 655 760 65 25 6 chr3 9300121 9300150 -150299633 + B1_Mur3 SINE Alu 1 140 -10 8 655 343 182 16 91 chr3 9300150 9300258 -150299525 + ID_B1 SINE B4 111 214 -10 8 655 249 33 0 0 chr3 9300258 9300288 -150299495 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 8 655 343 182 16 91 chr3 9300288 9300300 -150299483 + ID_B1 SINE B4 215 222 -2 8 655 1144 68 0 7 chr3 9301519 9301657 -150298126 + B1_Mus2 SINE Alu 1 138 -9 8 655 246 32 0 0 chr3 9301657 9301688 -150298095 + (CA)n Simple_repeat Simple_repeat 2 32 0 8 655 186 43 0 0 chr3 9301703 9301726 -150298057 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 8 655 555 209 0 0 chr3 9303595 9303831 -150295952 + (TG)n Simple_repeat Simple_repeat 1 236 0 8 655 333 205 0 0 chr3 9303857 9303969 -150295814 + (TG)n Simple_repeat Simple_repeat 1 112 0 8 655 1234 144 193 7 chr3 9304100 9304379 -150295404 + ORR1B1 LTR MaLR 1 386 -8 8 655 306 275 20 0 chr3 9304385 9304460 -150295323 + PB1D10 SINE Alu 10 88 -61 8 655 462 36 0 0 chr3 9304467 9304523 -150295260 + (GGAA)n Simple_repeat Simple_repeat 3 58 0 8 655 1200 120 3 6 chr3 9304537 9304902 -150294881 + (GGAA)n Simple_repeat Simple_repeat 1 364 0 8 655 733 183 23 0 chr3 9304903 9305078 -150294705 + GA-rich Low_complexity Low_complexity 2 180 0 8 655 449 209 173 0 chr3 9305394 9305504 -150294279 + ID_B1 SINE B4 91 219 -5 8 655 418 246 98 0 chr3 9305539 9305661 -150294122 + MLT1A0 LTR MaLR 232 365 0 8 655 229 273 0 35 chr3 9305752 9305809 -150293974 + ID_B1 SINE B4 90 144 -80 8 81 16579 96 11 30 chr3 9305908 9307375 -150292408 + L1_Mus1 LINE L1 3470 4921 -962 8 656 1187 75 0 0 chr3 9307375 9307522 -150292261 - B1_Mus2 SINE Alu 0 147 1 8 656 16579 96 11 30 chr3 9307522 9307736 -150292047 + L1_Mus1 LINE L1 4922 5128 -755 8 656 1069 78 28 0 chr3 9307736 9307878 -150291905 + B1_Mus2 SINE Alu 2 147 0 8 656 16579 103 48 48 chr3 9307878 9309315 -150290468 + L1_Mus1 LINE L1 5129 6563 -4 8 656 238 167 0 0 chr3 9309506 9309548 -150290235 + L1MA5 LINE L1 6220 6261 -39 8 656 720 196 180 0 chr3 9309553 9309742 -150290041 + URR1B DNA MER1_type 3 225 0 8 656 433 276 67 0 chr3 9309783 9309917 -150289866 + RSINE1 SINE B4 4 146 -19 8 656 24 0 0 0 chr3 9309967 9309991 -150289792 + AT_rich Low_complexity Low_complexity 1 24 0 8 656 3791 14 121 0 chr3 9310594 9311034 -150288749 + MT2_Mm LTR ERVL 1 493 0 8 656 48861 16 0 0 chr3 9311034 9316405 -150283378 + MERVL-int LTR ERVL 1 5371 -114 8 656 320 139 26 53 chr3 9316405 9316481 -150283302 + ORR1A3-int LTR MaLR 567 640 -1323 8 656 321 0 0 0 chr3 9316481 9316519 -150283264 + MERVL-int LTR ERVL 5448 5485 0 8 656 3728 20 121 0 chr3 9316519 9316959 -150282824 + MT2_Mm LTR ERVL 1 493 0 8 656 330 309 48 8 chr3 9317032 9317156 -150282627 - B1_Mur2 SINE Alu -15 134 6 8 656 385 205 0 0 chr3 9317167 9317245 -150282538 - PB1D10 SINE Alu -4 113 36 8 656 278 247 86 0 chr3 9317440 9317521 -150282262 + B3A SINE B2 1 88 -110 8 656 186 171 0 0 chr3 9318303 9318344 -150281439 + (CA)n Simple_repeat Simple_repeat 1 41 0 8 656 442 233 108 0 chr3 9319021 9319150 -150280633 + B4A SINE B4 89 231 -61 8 656 271 257 148 28 chr3 9319157 9319265 -150280518 + RSINE1 SINE B4 31 151 -14 8 656 183 114 0 0 chr3 9319360 9319395 -150280388 + (CA)n Simple_repeat Simple_repeat 2 36 0 8 656 453 271 0 0 chr3 9319862 9320039 -150279744 + (CA)n Simple_repeat Simple_repeat 2 178 0 8 656 530 184 27 18 chr3 9320321 9320432 -150279351 - RSINE1 SINE B4 -50 115 4 8 656 358 214 0 58 chr3 9320959 9321067 -150278716 - B1F SINE Alu -2 147 22 8 656 678 147 3 48 chr3 9321091 9321453 -150278330 + CT-rich Low_complexity Low_complexity 1 345 0 8 656 583 252 21 21 chr3 9321476 9321618 -150278165 - B1F2 SINE Alu -6 143 2 8 656 510 96 12 0 chr3 9321935 9322018 -150277765 + L1Md_F3 LINE L1 6498 6581 -3 8 656 351 239 0 0 chr3 9322671 9322738 -150277045 - PB1D10 SINE Alu -49 68 2 8 656 296 265 0 0 chr3 9322679 9322747 -150277036 - B4A SINE B4 -147 145 78 8 656 872 204 72 29 chr3 9322976 9323183 -150276600 - B3 SINE B2 0 216 1 8 656 610 328 95 19 chr3 9323233 9323550 -150276233 + MLT1G3 LTR MaLR 1 341 -254 8 656 328 312 15 52 chr3 9323612 9323747 -150276036 + MLT1G3 LTR MaLR 450 579 0 8 656 351 0 0 0 chr3 9324145 9324184 -150275599 + (TG)n Simple_repeat Simple_repeat 1 39 0 8 656 465 177 33 66 chr3 9324248 9324369 -150275414 + B1_Mur4 SINE Alu 9 125 -25 8 656 243 57 0 0 chr3 9324877 9324890 -150274893 + (A)n Simple_repeat Simple_repeat 1 13 0 8 656 1163 75 0 0 chr3 9324890 9325037 -150274746 + B1_Mm SINE Alu 1 147 0 8 656 243 57 0 0 chr3 9325037 9325058 -150274725 + (A)n Simple_repeat Simple_repeat 1 21 0 8 656 378 280 10 20 chr3 9325106 9325208 -150274575 - PB1D10 SINE Alu -3 114 14 8 656 927 201 220 16 chr3 9326537 9326855 -150272928 - ORR1C2 LTR MaLR 0 384 2 8 656 559 169 78 39 chr3 9326925 9327054 -150272729 - B1F2 SINE Alu -7 142 9 8 656 211 140 0 23 chr3 9327132 9327176 -150272607 + T-rich Low_complexity Low_complexity 3 45 0 8 656 494 237 136 0 chr3 9327275 9327393 -150272390 + B1_Mur2 SINE Alu 10 143 -6 8 656 222 356 0 0 chr3 9327475 9327534 -150272249 + ID4_ SINE ID 11 69 -14 8 656 436 175 10 10 chr3 9327907 9327991 -150271792 + CT-rich Low_complexity Low_complexity 17 101 0 8 656 1214 95 6 0 chr3 9327991 9328170 -150271613 + (TCCC)n Simple_repeat Simple_repeat 1 180 0 8 656 436 175 10 10 chr3 9328170 9328183 -150271600 + polypyrimidine Low_complexity Low_complexity 4 16 0 8 656 553 232 9 0 chr3 9328185 9328297 -150271486 - PB1D9 SINE Alu -7 113 1 8 656 180 77 0 0 chr3 9328490 9328516 -150271267 + (CAA)n Simple_repeat Simple_repeat 2 27 0 8 656 541 350 22 19 chr3 9328681 9328952 -150270831 - Charlie13b DNA Charlie -169 343 72 8 656 395 265 24 13 chr3 9329255 9329388 -150270395 - L1MB7 LINE L1 -2 6182 6052 8 656 262 297 23 23 chr3 9329475 9329606 -150270177 + B4A SINE B4 124 254 -38 8 656 2211 29 14 32 chr3 9329841 9330125 -150269658 - L1Md_F3 LINE L1 0 6584 6306 8 656 364 306 11 91 chr3 9330457 9330633 -150269150 - RSINE1 SINE B4 0 165 4 8 656 345 24 0 0 chr3 9330657 9330699 -150269084 + (TG)n Simple_repeat Simple_repeat 1 42 0 8 656 459 0 0 0 chr3 9330699 9330749 -150269034 + (GA)n Simple_repeat Simple_repeat 1 51 0 8 656 402 21 0 0 chr3 9330928 9330975 -150268808 + (TTG)n Simple_repeat Simple_repeat 3 49 0 8 656 308 326 36 15 chr3 9331629 9331766 -150268017 + ID_B1 SINE B4 3 142 -82 8 656 239 160 90 0 chr3 9331837 9331902 -150267881 + PB1D10 SINE Alu 37 111 -38 8 656 2190 84 143 12 chr3 9332213 9332323 -150267460 + L1Md_F2 LINE L1 6202 6311 -271 8 656 243 0 0 0 chr3 9332323 9332350 -150267433 + (CCCA)n Simple_repeat Simple_repeat 2 28 0 8 656 2190 84 143 12 chr3 9332350 9332575 -150267208 + L1Md_F2 LINE L1 6312 6580 -2 8 656 214 246 0 0 chr3 9332607 9332664 -150267119 + (TTTG)n Simple_repeat Simple_repeat 3 59 0 8 656 2660 106 26 31 chr3 9332665 9333085 -150266698 - Lx4A LINE L1 -4 7054 6637 8 656 1216 41 0 20 chr3 9333127 9333277 -150266506 + B1_Mus1 SINE Alu 2 148 0 8 656 1310 118 0 10 chr3 9333281 9333477 -150266306 + B2_Mm2 SINE B2 2 195 0 8 656 23 0 0 0 chr3 9333611 9333634 -150266149 + AT_rich Low_complexity Low_complexity 1 23 0 8 656 1098 75 117 18 chr3 9333678 9333841 -150265942 + B2_Mm1t SINE B2 1 179 -14 8 656 319 80 387 8 chr3 9333907 9334012 -150265771 + B2_Mm2 SINE B2 47 191 -4 8 656 184 77 51 0 chr3 9334564 9334603 -150265180 + (TGG)n Simple_repeat Simple_repeat 2 42 0 8 656 218 39 98 0 chr3 9335144 9335195 -150264588 + (CACCC)n Simple_repeat Simple_repeat 1 56 0 8 656 650 93 59 0 chr3 9336092 9336210 -150263573 + L1_Mus3 LINE L1 6511 6635 -3 8 656 1135 246 97 3 chr3 9337051 9337218 -150262565 + Lx5 LINE L1 6585 6756 -704 8 656 645 49 0 0 chr3 9337218 9337299 -150262484 + (GAAA)n Simple_repeat Simple_repeat 3 83 0 8 656 1826 252 87 11 chr3 9337299 9337847 -150261936 + Lx5 LINE L1 6454 7034 -16 8 656 28 0 0 0 chr3 9338118 9338146 -150261637 + AT_rich Low_complexity Low_complexity 1 28 0 8 656 755 161 241 0 chr3 9338421 9338595 -150261188 - B3 SINE B2 0 216 1 8 656 730 239 19 61 chr3 9338802 9339016 -150260767 + B3 SINE B2 1 205 -11 8 656 306 50 0 0 chr3 9339019 9339059 -150260724 + (TAAAA)n Simple_repeat Simple_repeat 1 40 0 8 656 338 261 58 8 chr3 9340040 9340160 -150259623 + B1F SINE Alu 24 149 0 8 656 833 254 9 23 chr3 9340171 9340389 -150259394 + B3 SINE B2 2 216 0 8 656 32 0 0 0 chr3 9340393 9340425 -150259358 + AT_rich Low_complexity Low_complexity 1 32 0 9 656 556 260 68 0 chr3 9340462 9340639 -150259144 + B3A SINE B2 7 195 -3 9 656 319 279 0 0 chr3 9341769 9341848 -150257935 - ID4 SINE ID -4 79 1 9 656 655 249 82 11 chr3 9341876 9342059 -150257724 + B3 SINE B2 15 210 -6 9 656 387 222 68 6 chr3 9342077 9342190 -150257593 + PB1D7 SINE Alu 3 118 -2 9 656 257 66 66 0 chr3 9342191 9342252 -150257531 + (CAAAAA)n Simple_repeat Simple_repeat 5 69 0 9 656 813 281 48 52 chr3 9342288 9342577 -150257206 + B4 SINE B4 3 290 -2 9 656 334 302 19 0 chr3 9342696 9342802 -150256981 + ID_B1 SINE B4 113 220 -4 9 656 257 143 0 0 chr3 9344150 9344192 -150255591 + B1F SINE Alu 103 144 -5 9 656 529 170 0 51 chr3 9344213 9344493 -150255290 + (TG)n Simple_repeat Simple_repeat 1 265 0 9 656 721 264 27 55 chr3 9344512 9344732 -150255051 - B3 SINE B2 -2 214 1 9 656 318 273 65 16 chr3 9345054 9345177 -150254606 - B1F SINE Alu 0 149 21 9 656 284 214 17 127 chr3 9345698 9345816 -150253967 + MIRc SINE MIR 62 166 -102 9 656 200 301 40 20 chr3 9347208 9347357 -150252426 + CT-rich Low_complexity Low_complexity 3 154 0 9 656 240 242 30 15 chr3 9348507 9348574 -150251209 - MIR SINE MIR -116 146 79 9 656 284 259 58 23 chr3 9348653 9348740 -150251043 + PB1D10 SINE Alu 28 117 0 9 656 378 314 105 19 chr3 9349268 9349430 -150250353 + B3A SINE B2 1 176 -22 9 656 500 272 5 122 chr3 9349452 9349632 -150250151 - B3A SINE B2 -2 196 30 9 656 1059 82 70 86 chr3 9349632 9349818 -150249965 + B2_Mm2 SINE B2 1 183 -12 9 656 500 272 5 122 chr3 9349818 9349859 -150249924 - B3A SINE B2 -169 29 1 9 656 389 274 84 56 chr3 9350927 9351070 -150248713 + B1F SINE Alu 1 147 -2 9 656 715 192 0 23 chr3 9351076 9351209 -150248574 + B1_Mus1 SINE Alu 10 139 -9 9 656 206 77 0 49 chr3 9351379 9351420 -150248363 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 9 656 454 280 8 17 chr3 9351612 9351732 -150248051 - PB1D9 SINE Alu 0 120 2 9 656 399 277 123 60 chr3 9353382 9353682 -150246101 + ORR1E LTR MaLR 1 319 -40 9 656 572 276 191 55 chr3 9353836 9354093 -150245690 + B4 SINE B4 1 292 0 9 656 491 82 14 0 chr3 9354415 9354488 -150245295 + (TCC)n Simple_repeat Simple_repeat 2 75 0 9 656 593 196 53 0 chr3 9355256 9355389 -150244394 + ID_B1 SINE B4 85 224 0 9 656 922 186 52 42 chr3 9356436 9356649 -150243134 + B3 SINE B2 2 216 0 9 656 21 71 0 0 chr3 9357206 9357248 -150242535 + AT_rich Low_complexity Low_complexity 1 42 0 9 656 507 225 91 23 chr3 9357255 9357387 -150242396 + B1F SINE Alu 1 141 -8 9 656 279 287 39 39 chr3 9357517 9357644 -150242139 - MIRb SINE MIR -71 197 71 9 656 695 175 19 71 chr3 9358686 9358840 -150240943 + B1_Mus2 SINE Alu 1 146 -1 9 656 2854 50 0 6 chr3 9358989 9359333 -150240450 + ORR1A1 LTR MaLR 5 346 0 9 656 212 59 0 29 chr3 9360026 9360061 -150239722 + (TG)n Simple_repeat Simple_repeat 2 35 0 9 656 755 188 15 0 chr3 9360171 9360304 -150239479 + B1_Mus1 SINE Alu 1 135 -13 9 656 211 115 36 55 chr3 9360323 9360378 -150239405 + (CAAA)n Simple_repeat Simple_repeat 2 55 0 9 656 527 278 119 0 chr3 9360389 9360565 -150239218 - B3 SINE B2 -5 211 15 9 656 251 341 170 16 chr3 9360599 9360781 -150239002 - ID_B1 SINE B4 -12 212 3 9 656 320 289 8 66 chr3 9360994 9361116 -150238667 + PB1 SINE Alu 11 125 -2 9 656 8393 51 12 1 chr3 9361127 9362213 -150237570 + L1_Mus3 LINE L1 5529 6626 -12 9 656 726 96 0 0 chr3 9362218 9362322 -150237461 + (GAAA)n Simple_repeat Simple_repeat 1 104 0 9 656 258 250 102 20 chr3 9362568 9362666 -150237117 + PB1D7 SINE Alu 5 110 -10 9 656 398 255 11 0 chr3 9362756 9362850 -150236933 - B1F SINE Alu -3 146 52 9 656 602 118 11 0 chr3 9362851 9362944 -150236839 + B1_Mur4 SINE Alu 1 94 -56 9 656 524 77 0 13 chr3 9362956 9363035 -150236748 + (CA)n Simple_repeat Simple_repeat 2 79 0 9 656 534 285 60 30 chr3 9363291 9363526 -150236257 - MLT2C1 LTR ERVL -60 337 96 9 656 245 380 0 25 chr3 9363567 9363648 -150236135 - RSINE1 SINE B4 -2 163 85 9 656 310 267 35 0 chr3 9363844 9363930 -150235853 - B1F SINE Alu -58 91 3 9 656 1300 99 60 0 chr3 9364755 9364937 -150234846 + B2_Mm2 SINE B2 2 194 -1 9 656 1156 83 0 0 chr3 9364965 9365110 -150234673 + B1_Mus1 SINE Alu 1 145 -3 9 656 333 0 0 0 chr3 9365110 9365147 -150234636 + (TAAA)n Simple_repeat Simple_repeat 2 38 0 9 656 332 232 14 0 chr3 9365201 9365270 -150234513 - ID4_ SINE ID -3 80 11 9 656 233 350 20 20 chr3 9365288 9365387 -150234396 - PB1D10 SINE Alu -2 115 17 9 656 852 104 0 0 chr3 9365418 9365543 -150234240 + (CGTG)n Simple_repeat Simple_repeat 3 127 0 9 656 338 323 10 0 chr3 9365983 9366079 -150233704 + PB1D10 SINE Alu 11 107 -10 9 656 538 228 71 0 chr3 9366242 9366369 -150233414 - RSINE1 SINE B4 -12 153 18 9 656 3189 263 145 17 chr3 9366400 9366740 -150233043 - L1_Mur3 LINE L1 -1514 4366 3969 9 656 378 61 0 0 chr3 9366740 9366789 -150232994 + (CATA)n Simple_repeat Simple_repeat 3 51 0 9 656 3189 263 145 17 chr3 9366789 9367969 -150231814 - L1_Mur3 LINE L1 -1912 3968 2652 9 656 561 209 57 43 chr3 9367969 9368109 -150231674 - RMER13A LTR ERVK -573 287 146 9 656 955 200 33 9 chr3 9368115 9368327 -150231456 - RMER13B LTR ERVK -686 222 6 9 656 403 264 122 6 chr3 9368339 9368495 -150231288 - L1_Mur3 LINE L1 -3260 2617 2444 9 656 913 132 28 0 chr3 9368500 9368644 -150231139 + B1_Mur3 SINE Alu 2 149 0 9 656 276 30 0 0 chr3 9368654 9368687 -150231096 + (CAA)n Simple_repeat Simple_repeat 1 33 0 9 656 378 0 0 0 chr3 9368695 9368737 -150231046 + (CA)n Simple_repeat Simple_repeat 2 43 0 9 656 1282 312 88 72 chr3 9368775 9369075 -150230708 - L1_Rod LINE L1 -3376 2471 2185 9 656 207 0 0 0 chr3 9369075 9369098 -150230685 + (TC)n Simple_repeat Simple_repeat 1 23 0 9 656 231 125 0 0 chr3 9369102 9369142 -150230641 + (CA)n Simple_repeat Simple_repeat 1 40 0 9 656 1282 312 88 72 chr3 9369142 9369153 -150230630 - L1_Rod LINE L1 -3663 2184 2184 9 656 852 176 114 0 chr3 9369153 9369346 -150230437 - B3 SINE B2 0 216 2 9 656 1282 312 88 72 chr3 9369346 9370159 -150229624 - L1_Rod LINE L1 -3663 2184 1323 9 656 1004 211 34 5 chr3 9370198 9370407 -150229376 - B3 SINE B2 0 216 2 9 656 2219 121 19 0 chr3 9370469 9370832 -150228951 + ORR1B1 LTR MaLR 1 370 -24 9 656 6730 157 111 170 chr3 9370832 9372917 -150226866 + ORR1B1-int LTR MaLR 2 1963 0 9 656 2645 110 0 97 chr3 9372917 9373351 -150226432 + ORR1B1 LTR MaLR 1 392 -2 9 656 1060 212 19 9 chr3 9373580 9373794 -150225989 - B3 SINE B2 0 216 1 9 656 287 281 101 48 chr3 9374601 9374769 -150225014 + MER5B DNA MER1_type 1 177 -1 9 656 759 247 89 5 chr3 9374975 9375003 -150224780 - B3 SINE B2 -6 210 167 9 656 390 42 0 0 chr3 9375003 9375051 -150224732 + (TATG)n Simple_repeat Simple_repeat 2 49 0 9 656 759 247 89 5 chr3 9375051 9375213 -150224570 - B3 SINE B2 -50 166 5 9 656 742 268 39 10 chr3 9375232 9375439 -150224344 - ID_B1 SINE B4 -8 216 4 9 656 368 265 142 77 chr3 9375499 9375654 -150224129 - B3A SINE B2 -21 177 1 9 656 297 0 0 0 chr3 9375945 9375978 -150223805 + (CA)n Simple_repeat Simple_repeat 2 34 0 9 656 2162 127 51 11 chr3 9375994 9376368 -150223415 + ORR1B1 LTR MaLR 1 389 -5 9 656 402 21 0 0 chr3 9376368 9376415 -150223368 + (TG)n Simple_repeat Simple_repeat 1 47 0 9 656 220 216 0 0 chr3 9376415 9376452 -150223331 + B1F1 SINE Alu 15 51 -98 9 656 261 194 179 0 chr3 9376493 9376560 -150223223 + MLT1J LTR MaLR 100 178 -334 9 656 308 308 8 16 chr3 9376687 9376809 -150222974 + MLT1J LTR MaLR 386 506 -6 9 656 277 348 80 12 chr3 9376809 9376972 -150222811 - L3 LINE CR1 -759 3730 3557 9 656 538 249 38 27 chr3 9377106 9377292 -150222491 - MER5A DNA MER1_type 0 189 2 9 656 701 244 83 55 chr3 9377340 9377557 -150222226 + B4A SINE B4 17 239 -53 9 656 2837 228 99 14 chr3 9378104 9378933 -150220850 + L1_Mur3 LINE L1 372 1270 -6458 9 656 243 236 63 21 chr3 9378935 9379078 -150220705 + ORR1B1-int LTR MaLR 606 754 -755 9 656 469 150 0 150 chr3 9378950 9379083 -150220700 + MT2B LTR ERVL 152 264 -337 9 656 945 63 0 0 chr3 9378978 9379104 -150220679 + B1_Mus2 SINE Alu 8 133 -14 9 656 287 65 22 0 chr3 9379105 9379151 -150220632 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 9 656 1457 140 0 0 chr3 9379155 9379383 -150220400 + L1_Mur3 LINE L1 1436 1663 -4217 9 656 1775 131 117 15 chr3 9379383 9379709 -150220074 + ORR1B2 LTR MaLR 1 359 -8 9 656 3903 156 28 20 chr3 9379711 9380469 -150219314 + L1_Mur3 LINE L1 1657 2420 -3460 9 656 27211 133 33 29 chr3 9380473 9386500 -150213283 - Lx LINE L1 -1 6653 594 9 656 2325 169 77 46 chr3 9386498 9386742 -150213041 + L1_Mur3 LINE L1 2402 2643 -3237 9 656 192 77 0 0 chr3 9386742 9386768 -150213015 + (CA)n Simple_repeat Simple_repeat 2 27 0 9 656 2325 169 77 46 chr3 9386768 9386962 -150212821 + L1_Mur3 LINE L1 2644 2851 -3029 9 656 381 43 0 0 chr3 9386962 9387009 -150212774 + (CAA)n Simple_repeat Simple_repeat 2 48 0 9 656 2325 169 77 46 chr3 9387009 9387091 -150212692 + L1_Mur3 LINE L1 2852 2937 -2943 9 656 1148 172 66 40 chr3 9387102 9387374 -150212409 + RLTR46 LTR ERVK 42 320 0 9 656 437 199 47 93 chr3 9387374 9387524 -150212259 + IAPEY3-int LTR ERVK 1 143 -7537 9 656 23643 218 20 4 chr3 9387572 9392399 -150207384 + IAPEY3-int LTR ERVK 535 5457 -2223 9 656 4255 119 8 13 chr3 9392725 9393735 -150206048 + IAPEY3-int LTR ERVK 6651 7680 0 9 656 1307 157 62 40 chr3 9393744 9394017 -150205766 + RLTR46 LTR ERVK 42 320 0 9 656 7612 163 22 31 chr3 9394019 9394523 -150205260 + L1_Mur3 LINE L1 2938 3442 -2438 9 656 1098 102 130 53 chr3 9394523 9394731 -150205052 + URR1B DNA MER1_type 1 224 -1 9 656 7612 163 22 31 chr3 9394731 9395275 -150204508 + L1_Mur3 LINE L1 3443 3973 -1907 9 656 2024 119 55 0 chr3 9395275 9395585 -150204198 + ORR1A2 LTR MaLR 1 327 0 9 656 7612 163 22 31 chr3 9395585 9396077 -150203706 + L1_Mur3 LINE L1 3974 4465 -1415 9 656 1118 206 48 36 chr3 9396444 9396696 -150203087 + L1_Mur3 LINE L1 4461 4715 -1165 9 656 262 248 7 158 chr3 9396672 9396811 -150202972 + Lx7 LINE L1 7496 7613 -83 9 656 596 199 6 151 chr3 9397145 9397311 -150202472 - B1_Mus2 SINE Alu -1 146 5 9 656 418 206 78 0 chr3 9397325 9397427 -150202356 - PB1D10 SINE Alu -7 110 1 1 656 251 363 18 54 chr3 9397464 9397630 -150202153 + MER45A DNA Tip100 17 176 -2 1 656 199 173 19 19 chr3 9397683 9397736 -150202047 + CT-rich Low_complexity Low_complexity 1 53 0 1 656 22 0 0 0 chr3 9397811 9397833 -150201950 + AT_rich Low_complexity Low_complexity 1 22 0 1 656 708 220 177 0 chr3 9398999 9399185 -150200598 - URR1A DNA MER1_type -4 222 4 1 656 356 274 177 0 chr3 9399335 9399448 -150200335 - RSINE1 SINE B4 -29 136 4 1 656 714 156 7 43 chr3 9399769 9399910 -150199873 - B1_Mus2 SINE Alu -11 136 1 1 656 244 333 188 0 chr3 9399912 9400077 -150199706 - B3A SINE B2 -2 196 1 1 656 691 231 143 5 chr3 9400106 9400302 -150199481 + ID_B1 SINE B4 2 224 0 1 656 537 169 136 0 chr3 9401568 9401686 -150198097 - B1_Mus1 SINE Alu -13 135 2 1 656 245 217 133 0 chr3 9401689 9401749 -150198034 + MLT2B2 LTR ERVL 17 84 -431 1 656 232 282 60 68 chr3 9401843 9401976 -150197807 + MTEb LTR MaLR 239 370 -4 1 656 825 209 98 11 chr3 9402185 9402369 -150197414 + 7SK RNA RNA 13 212 -119 1 656 923 260 114 3 chr3 9402414 9402703 -150197080 + MTD LTR MaLR 99 419 0 1 656 686 301 72 48 chr3 9403702 9403995 -150195788 - LTR87 LTR ERVL? 0 624 325 1 656 209 280 0 0 chr3 9404683 9404733 -150195050 + (CAT)n Simple_repeat Simple_repeat 2 51 0 1 656 324 0 0 0 chr3 9405885 9405921 -150193862 + (CA)n Simple_repeat Simple_repeat 2 37 0 1 656 495 242 104 8 chr3 9405988 9406113 -150193670 - B1_Mur2 SINE Alu -11 138 2 1 656 995 221 62 14 chr3 9406236 9406447 -150193336 - B4 SINE B4 -71 221 1 1 656 707 245 114 0 chr3 9406570 9406754 -150193029 - MER3 DNA MER1_type 0 209 5 1 656 256 111 18 18 chr3 9406819 9406874 -150192909 + (CA)n Simple_repeat Simple_repeat 1 55 0 1 656 738 194 149 11 chr3 9407429 9407617 -150192166 + B3 SINE B2 3 216 0 1 656 544 241 68 4 chr3 9408150 9408307 -150191476 - MTE2b LTR MaLR -15 404 241 1 656 1083 213 42 46 chr3 9409215 9409540 -150190243 - BGLII_B LTR ERVK 0 441 129 1 656 423 264 8 8 chr3 9409604 9409734 -150190049 + L1ME4a LINE L1 5806 5935 -189 1 656 306 273 132 8 chr3 9410053 9410182 -150189601 + ERVL-B4-int LTR ERVL 214 358 -5403 1 656 302 342 188 25 chr3 9410270 9410546 -150189237 + ERVL-B4-int LTR ERVL 465 785 -4929 1 656 405 0 0 0 chr3 9410880 9410925 -150188858 + (TTTTG)n Simple_repeat Simple_repeat 2 46 0 1 656 517 106 0 0 chr3 9410925 9411005 -150188778 - B1_Mus2 SINE Alu -10 139 60 1 656 523 261 147 16 chr3 9411491 9411682 -150188101 + ERVL-B4-int LTR ERVL 1418 1633 -4128 1 656 718 241 138 5 chr3 9411712 9411929 -150187854 + ERVL-B4-int LTR ERVL 1631 1876 -3838 1 656 850 158 77 11 chr3 9411930 9412132 -150187651 + ORR1D1 LTR MaLR 3 208 -162 1 656 727 229 0 149 chr3 9412144 9412281 -150187502 - L1_Rod LINE L1 -925 4922 4817 1 656 618 51 0 0 chr3 9412281 9412359 -150187424 + (TCTA)n Simple_repeat Simple_repeat 3 80 0 1 656 727 229 0 149 chr3 9412359 9412462 -150187321 - L1_Rod LINE L1 -1031 4816 4718 1 656 1165 284 43 38 chr3 9412460 9412830 -150186953 - Lx5 LINE L1 -200 6850 6479 1 656 1042 289 35 32 chr3 9412827 9413276 -150186507 - Lx5 LINE L1 -687 6363 5884 1 656 507 227 8 16 chr3 9413281 9413402 -150186381 + Lx6 LINE L1 7246 7365 -95 1 656 1782 90 68 0 chr3 9413405 9413671 -150186112 + MTB_Mm LTR MaLR 124 407 0 1 656 312 198 59 108 chr3 9413746 9413848 -150185935 - L1_Rod LINE L1 -2972 2875 2779 1 656 949 250 20 58 chr3 9413895 9414188 -150185595 - Lx7 LINE L1 0 7696 7415 1 656 9931 166 113 15 chr3 9414183 9414248 -150185535 - L1_Mur3 LINE L1 -1085 4795 4730 1 656 279 0 0 0 chr3 9414248 9414279 -150185504 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1 656 9931 166 113 15 chr3 9414279 9415836 -150183947 - L1_Mur3 LINE L1 -1151 4729 2998 1 656 1059 91 15 0 chr3 9415836 9416100 -150183683 + (TCTA)n Simple_repeat Simple_repeat 1 268 0 1 656 9931 166 113 15 chr3 9416100 9416429 -150183354 - L1_Mur3 LINE L1 -2883 2997 2642 1 656 420 71 0 0 chr3 9416429 9416485 -150183298 + (TG)n Simple_repeat Simple_repeat 1 56 0 1 656 9931 166 113 15 chr3 9416485 9416686 -150183097 - L1_Mur3 LINE L1 -3239 2641 2434 1 656 3448 23 26 0 chr3 9416686 9417072 -150182711 - MTA_Mm LTR MaLR 0 396 1 1 656 8870 49 8 3 chr3 9417072 9418164 -150181619 - MTA_Mm-int LTR MaLR 0 1098 1 1 656 3592 18 2 0 chr3 9418164 9418559 -150181224 - MTA_Mm LTR MaLR 0 396 1 1 656 16401 63 86 3 chr3 9418559 9420761 -150179022 - L1_Mm LINE L1 -223 5660 3276 1 656 1798 191 45 57 chr3 9420735 9420839 -150178944 - L1_Mur3 LINE L1 -4194 1686 1578 1 656 471 78 0 0 chr3 9420839 9420903 -150178880 + (TTCA)n Simple_repeat Simple_repeat 3 66 0 1 656 895 136 15 0 chr3 9420906 9421038 -150178745 - B1_Mus2 SINE Alu -12 135 2 1 656 4514 169 54 18 chr3 9421038 9422136 -150177647 - L1_Mur3 LINE L1 -4303 1577 443 1 656 1494 240 236 28 chr3 9422153 9422548 -150177235 - L1_Rod LINE L1 -3087 2760 2269 1 656 1094 198 104 0 chr3 9422548 9422750 -150177033 - URR1B DNA MER1_type 0 225 3 1 656 1494 240 236 28 chr3 9422750 9423058 -150176725 - L1_Rod LINE L1 -3579 2268 1911 1 656 677 270 55 5 chr3 9423247 9423448 -150176335 + ERVL-B4-int LTR ERVL 2609 2819 -2895 1 656 3183 257 60 49 chr3 9423448 9424086 -150175697 + MERVL_2A-int LTR ERVL 4270 4932 -829 1 656 708 142 126 0 chr3 9424086 9424213 -150175570 - B1_Mur3 SINE Alu -6 143 1 1 656 3183 257 60 49 chr3 9424213 9424515 -150175268 + MERVL_2A-int LTR ERVL 4933 5220 -541 1 656 838 284 107 7 chr3 9425991 9426282 -150173501 - MER2 DNA MER2_type -21 324 5 1 656 260 278 14 0 chr3 9428425 9428497 -150171286 - ID4 SINE ID -9 74 2 1 656 855 73 186 0 chr3 9430522 9430646 -150169137 - B1_Mus2 SINE Alu 0 147 1 1 656 489 127 0 0 chr3 9432183 9432262 -150167521 + (TTCC)n Simple_repeat Simple_repeat 4 82 0 1 657 270 0 0 0 chr3 9438660 9438690 -150161093 + (TTTTTG)n Simple_repeat Simple_repeat 3 32 0 1 657 538 274 42 18 chr3 9440106 9440273 -150159510 - ORR1E-int LTR MaLR -1197 173 3 1 657 22 35 0 0 chr3 9440455 9440484 -150159299 + AT_rich Low_complexity Low_complexity 1 29 0 1 657 394 323 128 25 chr3 9440969 9441204 -150158579 - ORR1E LTR MaLR -4 355 97 1 657 398 295 0 0 chr3 9441209 9441304 -150158479 - PB1D10 SINE Alu -21 96 2 1 657 445 305 45 26 chr3 9441312 9441467 -150158316 + MLT1A LTR MaLR 23 180 -194 1 657 392 297 102 13 chr3 9441570 9441727 -150158056 + MLT1A LTR MaLR 189 359 -15 1 657 443 277 95 51 chr3 9442326 9442600 -150157183 + B4A SINE B4 1 286 -6 1 657 978 54 54 0 chr3 9442951 9443081 -150156702 + B1_Mus1 SINE Alu 1 137 -11 1 657 1177 85 97 0 chr3 9443081 9443256 -150156527 + B2_Mm1t SINE B2 1 193 0 1 657 900 116 12 24 chr3 9443413 9443581 -150156202 + GA-rich Low_complexity Low_complexity 1 166 0 1 657 842 227 214 72 chr3 9443771 9444103 -150155680 + MTEb LTR MaLR 1 379 0 1 657 804 231 217 47 chr3 9444123 9444445 -150155338 - MTE2b LTR MaLR -2 377 1 1 657 844 155 131 60 chr3 9445480 9445679 -150154104 + B3 SINE B2 1 213 -3 1 657 459 248 139 8 chr3 9445718 9445840 -150153943 + ID_B1 SINE B4 86 223 -1 1 657 270 261 225 84 chr3 9446502 9446644 -150153139 + RSINE1 SINE B4 4 165 0 1 657 546 187 60 73 chr3 9446864 9446928 -150152855 - B1F SINE Alu -1 148 92 1 657 1089 79 14 0 chr3 9446928 9447068 -150152715 + B1_Mus1 SINE Alu 3 144 -4 1 657 546 187 60 73 chr3 9447068 9447153 -150152630 - B1F SINE Alu -58 91 1 1 657 277 355 23 61 chr3 9447706 9447838 -150151945 + MLT1A LTR MaLR 1 127 -247 1 657 829 97 0 0 chr3 9448278 9448391 -150151392 - B1_Mus2 SINE Alu 0 147 35 1 657 613 205 0 0 chr3 9448652 9448764 -150151019 + ORR1E LTR MaLR 5 116 -243 1 657 773 284 128 20 chr3 9448833 9449131 -150150652 + BGLII_B LTR ERVK 83 412 -29 1 657 374 192 229 9 chr3 9449158 9449263 -150150520 - B1_Mus2 SINE Alu -15 132 5 1 657 1528 183 192 0 chr3 9453144 9453466 -150146317 + ORR1C2 LTR MaLR 1 384 0 1 657 331 306 0 20 chr3 9453497 9453597 -150146186 - RSINE1 SINE B4 -57 108 11 1 657 830 321 56 19 chr3 9453768 9454035 -150145748 - B4 SINE B4 -14 278 2 1 657 418 311 20 55 chr3 9454035 9454191 -150145592 + RCHARR1 DNA MER1_type 80 233 -741 1 657 803 88 53 6 chr3 9454191 9454362 -150145421 + (CA)n Simple_repeat Simple_repeat 2 180 0 1 657 418 311 20 55 chr3 9454362 9454405 -150145378 + RCHARR1 DNA MER1_type 234 272 -702 1 657 1062 204 74 31 chr3 9454440 9454698 -150145085 + RCHARR1 DNA MER1_type 209 477 -497 1 657 1106 253 134 25 chr3 9454721 9455155 -150144628 + Lx8 LINE L1 6859 7339 -134 1 657 1568 154 46 45 chr3 9455322 9455695 -150144088 + ORR1A4 LTR MaLR 1 342 -42 1 657 460 236 133 13 chr3 9455701 9455851 -150143932 + Lx4B LINE L1 6890 7057 -1 1 657 22 0 0 0 chr3 9455851 9455873 -150143910 + AT_rich Low_complexity Low_complexity 1 22 0 1 657 353 43 22 0 chr3 9455889 9455935 -150143848 + ORR1A4 LTR MaLR 272 318 -8 1 657 480 235 324 9 chr3 9455937 9456156 -150143627 + ORR1D1 LTR MaLR 86 373 -1 1 657 239 283 95 38 chr3 9456539 9456697 -150143086 + LTR33 LTR ERVL 11 177 -338 1 657 45 62 0 0 chr3 9457028 9457108 -150142675 + AT_rich Low_complexity Low_complexity 1 80 0 1 657 1509 57 5 20 chr3 9457344 9457540 -150142243 + B2_Mm1a SINE B2 1 193 0 1 657 13419 77 115 7 chr3 9457854 9460313 -150139470 - L1VL2 LINE L1 -626 2989 283 1 657 863 263 32 0 chr3 9460556 9460746 -150139037 + B3 SINE B2 21 216 0 1 657 388 287 16 39 chr3 9460745 9460872 -150138911 - MT2B LTR ERVL -78 523 400 1 657 408 174 25 43 chr3 9460970 9461054 -150138729 + B1_Mur2 SINE Alu 21 136 -13 1 657 261 0 0 0 chr3 9461054 9461083 -150138700 + (CAAA)n Simple_repeat Simple_repeat 1 29 0 1 657 408 158 13 38 chr3 9461083 9461098 -150138685 + B1_Mur2 SINE Alu 137 149 0 1 657 246 310 9 107 chr3 9461284 9461396 -150138387 + MT2B LTR ERVL 165 265 -336 1 657 697 222 15 7 chr3 9461296 9461432 -150138351 + B1_Mur1 SINE Alu 13 149 0 1 657 252 0 0 0 chr3 9462255 9462283 -150137500 + (TTTA)n Simple_repeat Simple_repeat 4 31 0 1 657 546 246 0 0 chr3 9462284 9462394 -150137389 - PB1D10 SINE Alu -7 110 1 1 657 601 152 75 67 chr3 9462416 9462550 -150137233 - B1_Mur2 SINE Alu -13 136 2 1 657 254 301 0 14 chr3 9462557 9462631 -150137152 + LTR33B LTR ERVL 431 503 0 1 657 409 268 71 33 chr3 9462856 9463068 -150136715 + RLTR15 LTR ERVK 72 291 -68 1 657 288 0 0 0 chr3 9463355 9463387 -150136396 + (TG)n Simple_repeat Simple_repeat 2 33 0 1 657 222 37 0 0 chr3 9463415 9463442 -150136341 + (TG)n Simple_repeat Simple_repeat 2 28 0 1 657 234 0 0 0 chr3 9463469 9463495 -150136288 + (TG)n Simple_repeat Simple_repeat 2 27 0 1 657 504 0 0 0 chr3 9463608 9463664 -150136119 + (TG)n Simple_repeat Simple_repeat 2 57 0 1 657 386 198 118 21 chr3 9464123 9464216 -150135567 + ID_B1 SINE B4 116 217 -7 1 657 999 274 26 22 chr3 9464312 9464625 -150135158 - L1ME2 LINE L1 -318 5846 5533 1 657 2361 107 139 50 chr3 9465369 9465792 -150133991 + RMER6B LTR ERVK 1 461 0 1 657 208 0 62 0 chr3 9466305 9466337 -150133446 + (CACAG)n Simple_repeat Simple_repeat 4 37 0 1 657 1514 53 0 0 chr3 9466595 9466783 -150133000 - L1_Mus1 LINE L1 -537 6030 5843 1 657 4135 56 17 4 chr3 9466783 9467305 -150132478 + L1_Mus1 LINE L1 6039 6567 0 1 657 187 288 96 0 chr3 9467397 9467470 -150132313 + L2 LINE L2 525 604 -2815 1 657 189 287 117 47 chr3 9467901 9468029 -150131754 - MIRb SINE MIR -60 208 72 1 657 472 295 99 21 chr3 9470121 9470263 -150129520 + RSINE1 SINE B4 4 156 -9 1 657 437 195 115 35 chr3 9473027 9473165 -150126618 - PB1D9 SINE Alu -2 145 3 1 657 212 0 36 0 chr3 9473179 9473207 -150126576 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1 657 225 267 75 75 chr3 9474759 9474852 -150124931 - L2a LINE L2 0 3426 3334 1 657 449 175 91 8 chr3 9474957 9475078 -150124705 + MTEb LTR MaLR 249 379 0 1 657 235 241 104 94 chr3 9475836 9475932 -150123851 + MTEa LTR MaLR 283 379 0 1 657 926 272 258 60 chr3 9476233 9477081 -150122702 + Lx8 LINE L1 6453 7468 -5 1 657 510 180 0 0 chr3 9477339 9477439 -150122344 + GA-rich Low_complexity Low_complexity 2 101 0 1 657 488 285 36 7 chr3 9477494 9477632 -150122151 - B1F2 SINE Alu -7 142 1 1 657 1509 184 50 59 chr3 9478571 9478911 -150120872 + ORR1C1 LTR MaLR 1 337 -41 1 657 5042 50 11 2 chr3 9478911 9479526 -150120257 - L1_Mm LINE L1 -14 5869 5249 1 657 969 8 0 0 chr3 9479526 9479643 -150120140 + RLTRETN_Mm LTR ERVK 1 117 -205 1 657 3297 46 2 8 chr3 9480231 9480628 -150119155 - MTA_Mm LTR MaLR 0 396 2 1 657 201 74 0 0 chr3 9480800 9480827 -150118956 + (CAAA)n Simple_repeat Simple_repeat 3 29 0 1 657 1140 34 0 76 chr3 9482403 9482561 -150117222 + B1_Mm SINE Alu 1 146 -1 1 657 240 111 0 0 chr3 9482561 9482597 -150117186 + (TAAA)n Simple_repeat Simple_repeat 1 36 0 1 657 444 276 66 15 chr3 9482860 9482996 -150116787 - B1F2 SINE Alu -5 144 2 1 657 279 267 23 114 chr3 9482880 9483011 -150116772 - MT2B LTR ERVL -330 271 153 1 657 261 240 159 83 chr3 9483172 9483197 -150116586 + MT2B LTR ERVL 137 171 -430 1 657 688 157 112 0 chr3 9483197 9483331 -150116452 + B1_Mur3 SINE Alu 1 149 0 1 657 422 219 191 0 chr3 9483421 9483526 -150116257 - B1_Mur2 SINE Alu -5 144 20 1 657 467 291 26 47 chr3 9484280 9484471 -150115312 - B4 SINE B4 0 292 106 1 657 374 266 64 83 chr3 9484488 9484644 -150115139 - B4 SINE B4 -138 154 2 1 657 1450 192 162 14 chr3 9484680 9485045 -150114738 + MTD LTR MaLR 1 419 0 1 657 232 333 77 19 chr3 9486345 9486449 -150113334 - LTR16B1 LTR ERVL -2 461 352 1 657 1952 126 58 80 chr3 9486467 9486829 -150112954 + ORR1B1 LTR MaLR 41 394 0 1 657 262 346 123 14 chr3 9486829 9487039 -150112744 - LTR16B1 LTR ERVL -168 312 66 1 657 2043 193 29 19 chr3 9487208 9487625 -150112158 + MTC LTR MaLR 1 421 0 1 657 591 276 153 128 chr3 9487687 9488224 -150111559 + RLTR18 LTR ERVK 25 574 -42 1 657 229 165 25 19 chr3 9488390 9488463 -150111320 - MIR SINE MIR -89 173 101 1 657 641 254 42 30 chr3 9488576 9488822 -150110961 + MLT1B LTR MaLR 211 533 -16 1 657 825 52 174 0 chr3 9489696 9489811 -150109972 + B1_Mus1 SINE Alu 1 135 -13 1 657 498 295 195 11 chr3 9490193 9490609 -150109174 - L1MB7 LINE L1 -14 6160 5665 1 657 602 272 174 39 chr3 9490782 9491239 -150108544 - L1MB7 LINE L1 -744 5396 4890 1 657 239 292 76 86 chr3 9491301 9491406 -150108377 - L3 LINE CR1 -627 3862 3759 1 657 1797 152 121 12 chr3 9491927 9492267 -150107516 + ORR1C1 LTR MaLR 2 378 0 1 657 306 0 0 0 chr3 9492865 9492899 -150106884 + (TG)n Simple_repeat Simple_repeat 1 34 0 1 657 402 159 0 0 chr3 9492899 9492987 -150106796 + GA-rich Low_complexity Low_complexity 2 89 0 1 657 513 239 86 0 chr3 9493779 9493896 -150105887 - RSINE1 SINE B4 -30 135 9 1 657 3516 25 0 8 chr3 9494059 9494458 -150105325 + MTA_Mm LTR MaLR 1 396 0 1 657 181 154 50 25 chr3 9494767 9494807 -150104976 - MER5B DNA MER1_type -111 67 27 1 657 282 106 0 0 chr3 9494985 9495032 -150104751 + (TCTCCC)n Simple_repeat Simple_repeat 3 49 0 1 657 375 23 0 0 chr3 9498099 9498143 -150101640 + (TG)n Simple_repeat Simple_repeat 1 44 0 1 657 216 276 17 0 chr3 9498174 9498232 -150101551 - B1_Mus1 SINE Alu -87 61 3 1 657 691 178 6 136 chr3 9499287 9499456 -150100327 + B1_Mur4 SINE Alu 4 150 0 1 657 235 242 30 59 chr3 9499546 9499647 -150100136 + L1MC5 LINE L1 7705 7802 -159 1 657 247 284 77 30 chr3 9500020 9500170 -150099613 - MIR SINE MIR -32 236 82 1 657 1232 68 46 21 chr3 9500474 9500668 -150099115 + L1_Mus3 LINE L1 6439 6637 -1 2 657 423 174 74 32 chr3 9501256 9501351 -150098432 - ID_B1 SINE B4 -12 212 114 3 657 233 306 0 0 chr3 9501399 9501461 -150098322 - MIRb SINE MIR -23 245 184 4 657 384 302 8 70 chr3 9502739 9502867 -150096916 + PB1D7 SINE Alu 1 120 0 5 657 490 237 16 25 chr3 9503058 9503179 -150096604 + PB1D9 SINE Alu 1 120 0 6 657 212 258 281 0 chr3 9503418 9503507 -150096276 - PB1D9 SINE Alu -3 117 4 7 657 233 233 64 64 chr3 9503507 9503561 -150096222 - MT2C_Mm LTR ERVL -267 208 155 8 657 990 101 0 0 chr3 9504433 9504571 -150095212 - B1_Mur3 SINE Alu -10 139 2 9 657 246 349 33 55 chr3 9504750 9504764 -150095019 - ID SINE ID -135 89 1 1 657 275 351 26 0 chr3 9504764 9504841 -150094942 - ID4 SINE ID -4 79 1 1 657 486 304 66 77 chr3 9504863 9505059 -150094724 - B3A SINE B2 -3 195 2 1 657 224 266 62 0 chr3 9505083 9505147 -150094636 - PB1D9 SINE Alu -52 68 1 1 657 694 141 100 30 chr3 9506366 9506645 -150093138 + Lx9 LINE L1 7291 7644 0 1 657 5560 107 178 7 chr3 9506797 9507679 -150092104 + RLTR13D4 LTR ERVK 1 1033 0 1 657 283 330 0 17 chr3 9507876 9508052 -150091731 + (CCA)n Simple_repeat Simple_repeat 2 174 0 1 657 226 276 127 52 chr3 9508545 9508679 -150091104 + YREP_Mm Unknown Unknown 153 296 -1516 1 657 667 219 55 0 chr3 9508569 9508697 -150091086 - ID_B1 SINE B4 -6 218 84 1 657 238 363 10 19 chr3 9508605 9508709 -150091074 - MT2B LTR ERVL -344 257 155 1 657 831 226 74 20 chr3 9509212 9509415 -150090368 + B3 SINE B2 2 215 -1 2 657 21 0 0 0 chr3 9509624 9509645 -150090138 + AT_rich Low_complexity Low_complexity 1 21 0 2 657 7936 126 59 1 chr3 9510177 9511977 -150087806 - Lx LINE L1 -9 6645 4738 2 657 405 0 0 0 chr3 9511977 9512022 -150087761 + (TTTTG)n Simple_repeat Simple_repeat 2 46 0 2 657 7936 139 28 2 chr3 9512022 9512177 -150087606 - Lx LINE L1 -1146 4737 4576 2 657 1066 240 63 7 chr3 9512460 9512729 -150087054 + RMER1B Other Other 43 326 -740 2 657 1801 170 97 28 chr3 9512727 9513120 -150086663 + RMER1B Other Other 644 1063 -3 2 657 262 223 112 28 chr3 9513366 9513509 -150086274 + MER33 DNA MER1_type 69 223 -101 2 657 219 271 81 54 chr3 9513512 9513586 -150086197 + ID2 SINE ID 2 77 -6 2 657 25 31 0 0 chr3 9514292 9514324 -150085459 + AT_rich Low_complexity Low_complexity 1 32 0 2 657 543 209 14 128 chr3 9514331 9514479 -150085304 + B1_Mur3 SINE Alu 15 145 -4 2 657 273 57 0 0 chr3 9514598 9514633 -150085150 + (TG)n Simple_repeat Simple_repeat 2 36 0 2 657 583 165 0 10 chr3 9514804 9514902 -150084881 - PB1D10 SINE Alu 0 117 21 3 657 787 267 126 28 chr3 9515874 9516121 -150083662 - B4A SINE B4 -14 278 8 3 657 891 0 0 0 chr3 9516411 9516510 -150083273 + (GGGA)n Simple_repeat Simple_repeat 1 99 0 3 657 418 314 13 99 chr3 9517162 9517314 -150082469 - RSINE1 SINE B4 -25 140 2 3 657 207 182 0 0 chr3 9518201 9518234 -150081549 + polypurine Low_complexity Low_complexity 1 33 0 3 657 246 277 87 11 chr3 9518389 9518524 -150081259 + L1M2 LINE L1 3598 3756 -2387 3 657 345 284 63 18 chr3 9518644 9518755 -150081028 + RSINE1 SINE B4 20 135 -30 3 657 258 32 0 0 chr3 9518755 9518786 -150080997 + (CA)n Simple_repeat Simple_repeat 1 31 0 3 657 1257 168 52 28 chr3 9519077 9519387 -150080396 + ORR1B2 LTR MaLR 11 367 0 3 657 1051 259 53 11 chr3 9519387 9519670 -150080113 + RMER5 LTR ERV1 239 533 -1 3 657 270 0 0 0 chr3 9520704 9520734 -150079049 + (CA)n Simple_repeat Simple_repeat 2 31 0 4 657 1000 46 69 0 chr3 9520993 9521124 -150078659 + B1_Mus1 SINE Alu 8 147 -1 4 657 486 0 0 0 chr3 9522029 9522083 -150077700 + (TCTA)n Simple_repeat Simple_repeat 2 55 0 4 657 181 0 0 65 chr3 9524229 9524260 -150075523 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 4 657 1165 30 0 0 chr3 9525374 9525508 -150074275 + B1_Mm SINE Alu 1 134 -13 4 657 29 0 0 0 chr3 9526043 9526072 -150073711 + AT_rich Low_complexity Low_complexity 1 29 0 4 657 290 244 12 0 chr3 9527698 9527784 -150071999 - L1MDa LINE L1 -3340 3197 3111 4 657 260 91 0 113 chr3 9527784 9527805 -150071978 + (CTA)n Simple_repeat Simple_repeat 1 21 0 4 657 1338 100 0 0 chr3 9527805 9528555 -150071228 + (CTG)n Simple_repeat Simple_repeat 1 750 0 4 657 260 91 0 113 chr3 9528555 9528589 -150071194 + (CTA)n Simple_repeat Simple_repeat 2 33 0 4 657 591 246 51 0 chr3 9528589 9528727 -150071056 - B1_Mus1 SINE Alu -3 145 1 5 657 363 286 150 24 chr3 9528754 9529048 -150070735 - L1MDa LINE L1 -4262 2371 2041 4 657 323 290 86 14 chr3 9529094 9529234 -150070549 - L1MDa LINE L1 -4674 1959 1810 4 657 493 266 121 32 chr3 9529234 9529483 -150070300 - L1MDa LINE L1 -5360 1273 1003 4 657 1676 169 69 16 chr3 9529816 9530135 -150069648 + ORR1D1 LTR MaLR 31 366 -8 5 657 331 308 207 20 chr3 9530316 9530621 -150069162 - L1MDa LINE L1 -6143 490 129 4 657 569 14 0 14 chr3 9530764 9530835 -150068948 + (GGGA)n Simple_repeat Simple_repeat 1 70 0 5 657 266 30 0 0 chr3 9531724 9531757 -150068026 - L1_Mus2 LINE L1 -616 5950 5918 5 657 3383 76 24 11 chr3 9531766 9532219 -150067564 + L1_Mus1 LINE L1 6109 6567 0 5 657 289 150 32 32 chr3 9532219 9532271 -150067512 + 4.5SRNA scRNA scRNA 34 86 -8 5 657 872 64 0 0 chr3 9532271 9532329 -150067454 + B1_Mm SINE Alu 38 147 0 5 657 192 77 0 0 chr3 9532329 9532355 -150067428 + (A)n Simple_repeat Simple_repeat 1 26 0 5 657 10757 96 35 20 chr3 9532495 9534582 -150065201 - L1_Mm LINE L1 -2595 3288 1275 5 657 186 216 19 38 chr3 9535286 9535339 -150064444 - MIR SINE MIR -178 84 33 5 657 219 213 91 8 chr3 9535711 9535791 -150063992 + PB1D10 SINE Alu 21 122 -5 6 657 211 247 10 41 chr3 9535800 9535897 -150063886 + (TAAA)n Simple_repeat Simple_repeat 3 96 0 6 657 1282 27 0 0 chr3 9536123 9536270 -150063513 + B1_Mm SINE Alu 1 147 0 6 657 198 0 0 0 chr3 9536270 9536292 -150063491 + (A)n Simple_repeat Simple_repeat 1 22 0 6 657 451 219 165 40 chr3 9538460 9538636 -150061147 + MLT1D LTR MaLR 7 204 -301 6 657 2318 172 47 153 chr3 9539038 9539664 -150060119 - RMER19C LTR ERVK -4 607 50 6 657 1481 68 21 0 chr3 9539664 9539855 -150059928 + B2_Mm2 SINE B2 1 195 0 6 657 2318 172 47 153 chr3 9539855 9539907 -150059876 - RMER19C LTR ERVK -562 49 1 6 657 369 283 111 85 chr3 9540042 9540174 -150059609 - MER58B DNA MER1_type -142 199 80 6 657 711 185 19 52 chr3 9540174 9540328 -150059455 + B1_Mur1 SINE Alu 1 149 0 6 657 369 283 111 85 chr3 9540328 9540384 -150059399 - MER58B DNA MER1_type -262 79 6 6 657 315 157 144 0 chr3 9540543 9540696 -150059087 + (CAGCC)n Simple_repeat Simple_repeat 5 179 0 6 657 282 248 97 49 chr3 9540944 9541088 -150058695 + L3 LINE CR1 3665 3815 -674 7 657 180 0 0 0 chr3 9541341 9541361 -150058422 + (TTG)n Simple_repeat Simple_repeat 2 21 0 7 657 309 203 12 188 chr3 9541410 9541495 -150058288 - ID4_ SINE ID -68 84 15 7 657 503 259 139 33 chr3 9541567 9541747 -150058036 - B4A SINE B4 -13 279 81 7 657 294 231 67 45 chr3 9541738 9541843 -150057940 - PB1D10 SINE Alu -1 126 10 7 657 1285 34 0 0 chr3 9541857 9542004 -150057779 + B1_Mm SINE Alu 1 147 0 7 657 297 109 0 0 chr3 9542005 9542051 -150057732 + (A)n Simple_repeat Simple_repeat 1 46 0 7 657 354 252 123 51 chr3 9543163 9543301 -150056482 + RSINE1 SINE B4 15 162 -3 7 657 282 56 0 0 chr3 9543559 9543595 -150056188 + (CTG)n Simple_repeat Simple_repeat 2 37 0 7 657 1211 173 191 10 chr3 9543666 9543975 -150055808 + MTC LTR MaLR 1 365 -56 7 657 410 216 34 0 chr3 9543976 9544064 -150055719 - B1F2 SINE Alu -46 103 13 8 657 541 200 38 23 chr3 9544066 9544199 -150055584 - B4A SINE B4 -56 236 102 8 657 286 189 50 63 chr3 9544216 9544298 -150055485 - B1_Mur2 SINE Alu 0 149 29 8 657 493 305 77 35 chr3 9544314 9544484 -150055299 - B4 SINE B4 -114 178 2 8 657 213 314 0 0 chr3 9544752 9544803 -150054980 + (CATA)n Simple_repeat Simple_repeat 4 54 0 8 657 360 0 0 0 chr3 9545298 9545338 -150054445 + (CA)n Simple_repeat Simple_repeat 2 41 0 8 657 340 325 67 92 chr3 9545428 9545743 -150054040 + MLT1E3 LTR MaLR 261 567 -57 8 657 858 36 0 0 chr3 9545752 9545862 -150053921 + (CA)n Simple_repeat Simple_repeat 1 110 0 8 657 333 68 0 0 chr3 9546869 9546913 -150052870 + (TCCCC)n Simple_repeat Simple_repeat 1 44 0 8 657 234 341 90 37 chr3 9548250 9548384 -150051399 + MTEa LTR MaLR 44 184 -175 8 657 275 354 10 20 chr3 9548451 9548552 -150051231 + MTEa LTR MaLR 280 379 0 8 657 1135 52 0 0 chr3 9548638 9548773 -150051010 - B1_Mus2 SINE Alu -11 136 2 9 657 1362 220 68 30 chr3 9549389 9549726 -150050057 - Lx9 LINE L1 -147 7497 7148 9 657 207 0 0 0 chr3 9551313 9551336 -150048447 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 9 657 282 116 0 0 chr3 9551689 9551732 -150048051 + (CCTG)n Simple_repeat Simple_repeat 4 46 0 9 657 486 345 83 34 chr3 9551770 9552034 -150047749 - B4A SINE B4 -8 284 8 9 657 1275 246 131 0 chr3 9552557 9552907 -150046876 + MTD LTR MaLR 11 406 -13 9 657 330 132 0 0 chr3 9553230 9553283 -150046500 + (TG)n Simple_repeat Simple_repeat 1 53 0 9 657 1599 32 0 5 chr3 9555273 9555459 -150044324 - B2_Mm2 SINE B2 -9 186 2 9 657 384 104 0 0 chr3 9555678 9555745 -150044038 + (TG)n Simple_repeat Simple_repeat 1 67 0 9 657 382 128 42 11 chr3 9555765 9555860 -150043923 + GA-rich Low_complexity Low_complexity 1 98 0 9 657 1019 39 0 30 chr3 9556705 9556838 -150042945 + B1_Mm SINE Alu 18 146 -1 1 657 341 281 0 0 chr3 9557293 9557375 -150042408 + PB1D7 SINE Alu 33 114 -6 1 657 341 276 49 39 chr3 9557548 9557650 -150042133 + PB1D9 SINE Alu 1 103 -17 1 657 582 114 0 0 chr3 9557661 9557749 -150042034 + (CATA)n Simple_repeat Simple_repeat 2 89 0 1 657 521 209 11 0 chr3 9557757 9558030 -150041753 + (CA)n Simple_repeat Simple_repeat 1 276 0 1 657 1057 155 97 0 chr3 9558439 9558645 -150041138 + URR1A DNA MER1_type 1 226 0 1 657 233 146 0 80 chr3 9558962 9559074 -150040709 + (CAGA)n Simple_repeat Simple_repeat 4 106 0 1 657 180 77 0 0 chr3 9559713 9559739 -150040044 + (T)n Simple_repeat Simple_repeat 1 26 0 1 657 956 68 6 121 chr3 9559739 9559905 -150039878 - B1_Mus2 SINE Alu 0 147 1 1 657 1297 103 16 5 chr3 9559909 9560094 -150039689 - B2_Mm2 SINE B2 -8 187 1 1 657 330 289 4 89 chr3 9561197 9561329 -150038454 + LTR16B2 LTR ERVL 347 463 -17 1 657 663 283 38 0 chr3 9562769 9562953 -150036830 + ID_B1 SINE B4 15 205 -19 1 657 429 280 33 25 chr3 9564461 9564582 -150035201 - B4 SINE B4 -169 123 2 1 657 502 173 0 4 chr3 9565418 9565521 -150034262 + B1_Mur2 SINE Alu 49 149 0 1 657 211 328 0 0 chr3 9567940 9568007 -150031776 + (TG)n Simple_repeat Simple_repeat 1 67 0 1 658 192 235 188 0 chr3 9568930 9569015 -150030768 + L3 LINE CR1 3975 4075 -414 1 658 207 0 0 0 chr3 9569350 9569373 -150030410 + (CA)n Simple_repeat Simple_repeat 1 23 0 1 658 4419 95 43 36 chr3 9569678 9570419 -150029364 + RMER17A LTR ERVK 1 746 -5 1 658 457 208 0 40 chr3 9570973 9571073 -150028710 - ID_B1 SINE B4 -8 216 121 1 658 310 250 0 43 chr3 9571075 9571192 -150028591 + C-rich Low_complexity Low_complexity 4 115 0 1 658 512 294 7 7 chr3 9571192 9571339 -150028444 - ID_B1 SINE B4 -76 148 2 1 658 24 0 0 0 chr3 9572292 9572316 -150027467 + AT_rich Low_complexity Low_complexity 1 24 0 1 658 185 298 70 60 chr3 9572642 9572742 -150027041 - L3 LINE CR1 -1040 3449 3349 1 658 532 230 141 17 chr3 9572956 9573133 -150026650 + B3 SINE B2 3 201 -15 1 658 215 194 0 0 chr3 9573134 9573170 -150026613 + G-rich Low_complexity Low_complexity 1 36 0 1 658 1129 120 36 52 chr3 9573199 9573392 -150026391 - B2_Mm2 SINE B2 -4 191 2 1 658 534 91 0 0 chr3 9574022 9574099 -150025684 + (GAAA)n Simple_repeat Simple_repeat 3 79 0 1 658 182 297 85 59 chr3 9574319 9574437 -150025346 + L2 LINE L2 2630 2750 -669 1 658 845 136 30 0 chr3 9576437 9576569 -150023214 - B1_Mur3 SINE Alu -11 138 3 1 658 1055 293 91 0 chr3 9576801 9577153 -150022630 - MTD LTR MaLR -1 418 35 1 658 238 284 104 10 chr3 9577206 9577302 -150022481 + PB1D10 SINE Alu 5 109 -8 1 658 364 315 31 31 chr3 9577343 9577474 -150022309 + B1_Mur1 SINE Alu 3 135 -14 1 658 207 0 0 0 chr3 9577474 9577497 -150022286 + (CAAT)n Simple_repeat Simple_repeat 1 23 0 1 658 364 312 31 31 chr3 9577497 9577510 -150022273 + B1_Mur1 SINE Alu 136 146 -3 1 658 300 224 114 34 chr3 9580423 9580511 -150019272 + L1M4b LINE L1 2170 2264 -5070 1 658 223 72 23 23 chr3 9580511 9580554 -150019229 + (CAAAA)n Simple_repeat Simple_repeat 3 45 0 1 658 647 122 82 41 chr3 9580906 9581043 -150018740 + B1_Mm SINE Alu 7 148 0 1 658 210 154 0 0 chr3 9581044 9581083 -150018700 + A-rich Low_complexity Low_complexity 1 39 0 1 658 1166 118 32 16 chr3 9581951 9582141 -150017642 - B2_Mm1a SINE B2 0 193 1 1 658 2441 142 175 4 chr3 9582405 9582886 -150016897 - RMER15 LTR ERVL -4 571 9 1 658 240 226 19 0 chr3 9582890 9582943 -150016840 + CT-rich Low_complexity Low_complexity 2 55 0 1 658 429 266 11 0 chr3 9583187 9583281 -150016502 + B4A SINE B4 2 96 -196 1 658 346 179 119 0 chr3 9583289 9583356 -150016427 + B4 SINE B4 216 290 -2 1 658 485 326 103 55 chr3 9583450 9583556 -150016227 + B4A SINE B4 4 105 -187 1 658 1761 197 74 37 chr3 9583556 9583962 -150015821 + MTC LTR MaLR 1 421 0 1 658 485 326 103 55 chr3 9583962 9584128 -150015655 + B4A SINE B4 106 289 -3 1 658 492 272 91 38 chr3 9585314 9585524 -150014259 - ID_B1 SINE B4 -3 221 1 1 658 4642 45 19 9 chr3 9585619 9586183 -150013600 + L1_Mus1 LINE L1 5998 6567 0 1 658 587 124 10 20 chr3 9586211 9586310 -150013473 + B1_Mur3 SINE Alu 51 148 -1 1 658 318 281 173 13 chr3 9586322 9586641 -150013142 + L1MD LINE L1 4616 4995 -1151 1 658 608 249 92 50 chr3 9586641 9586719 -150013064 + L1MD LINE L1 5529 5608 -751 1 658 2051 132 6 58 chr3 9586719 9587064 -150012719 - ORR1A2 LTR MaLR 0 327 1 1 658 608 249 92 50 chr3 9587064 9587247 -150012536 + L1MD LINE L1 5609 5801 -558 1 658 254 286 65 28 chr3 9587304 9587412 -150012371 + PB1D9 SINE Alu 1 112 -8 1 658 417 202 102 70 chr3 9587862 9587990 -150011793 + ID_B1 SINE B4 82 213 -11 1 658 279 0 0 0 chr3 9588028 9588059 -150011724 + (TG)n Simple_repeat Simple_repeat 2 32 0 1 658 1046 282 65 39 chr3 9588260 9588596 -150011187 + ORR1E LTR MaLR 4 348 -11 1 658 1381 304 114 39 chr3 9589569 9590572 -150009211 - Lx8 LINE L1 -34 7439 6345 1 658 299 167 120 40 chr3 9590612 9590687 -150009096 - Lx8 LINE L1 -1262 6211 6131 1 658 290 303 137 20 chr3 9590741 9591034 -150008749 - L1M4 LINE L1 -1877 4269 3943 1 658 237 319 70 9 chr3 9591007 9591121 -150008662 - L1MD LINE L1 -2216 3930 3810 1 658 1101 50 0 54 chr3 9591467 9591614 -150008169 - B1_Mus2 SINE Alu -8 139 1 1 658 377 233 124 124 chr3 9592082 9592268 -150007515 - B2_Mm2 SINE B2 -9 186 1 1 658 183 264 75 0 chr3 9592433 9592486 -150007297 + L2 LINE L2 2319 2375 -1044 1 658 293 323 21 10 chr3 9592707 9592804 -150006979 + PB1D10 SINE Alu 1 98 -19 1 658 719 281 53 36 chr3 9593255 9593472 -150006311 + B4A SINE B4 2 222 -70 1 658 221 299 64 140 chr3 9593472 9593514 -150006269 + B3A SINE B2 2 42 -156 1 658 444 133 212 10 chr3 9593514 9593613 -150006170 + PB1D9 SINE Alu 2 120 0 1 658 221 299 64 140 chr3 9593613 9593741 -150006042 + B3A SINE B2 43 159 -39 1 658 501 232 175 11 chr3 9593920 9594092 -150005691 + B3A SINE B2 4 195 0 1 658 257 262 22 101 chr3 9594093 9594182 -150005601 - B3 SINE B2 -134 82 1 1 658 261 211 41 72 chr3 9594186 9594283 -150005500 - B4 SINE B4 -74 218 125 1 658 3312 21 42 0 chr3 9595338 9595718 -150004065 + MTA_Mm LTR MaLR 1 396 0 1 658 210 206 46 31 chr3 9595818 9595883 -150003900 - PB1D7 SINE Alu -51 69 4 1 658 527 263 0 41 chr3 9595915 9596038 -150003745 + PB1D9 SINE Alu 1 118 -2 1 658 775 296 0 0 chr3 9596071 9596230 -150003553 + B3A SINE B2 2 160 -38 1 658 333 0 0 0 chr3 9596238 9596275 -150003508 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 658 682 204 0 14 chr3 9596278 9596417 -150003366 + B1_Mur2 SINE Alu 2 138 -11 1 658 425 282 45 97 chr3 9596488 9596778 -150003005 - B4 SINE B4 -16 276 2 1 658 1203 90 6 0 chr3 9597426 9597592 -150002191 + B2_Mm1t SINE B2 1 167 -26 1 658 413 78 0 5 chr3 9597627 9597689 -150002094 + B2_Mm2 SINE B2 50 109 -107 1 658 237 33 0 0 chr3 9597697 9597727 -150002056 + (TAAA)n Simple_repeat Simple_repeat 4 33 0 1 658 252 260 31 20 chr3 9598051 9598149 -150001634 - MIRc SINE MIR -140 128 30 1 658 264 59 0 0 chr3 9598428 9598462 -150001321 + (GA)n Simple_repeat Simple_repeat 2 35 0 1 658 180 111 0 0 chr3 9598456 9598483 -150001300 + (GGAA)n Simple_repeat Simple_repeat 4 30 0 1 658 448 306 96 8 chr3 9598697 9598822 -150000961 + B4A SINE B4 93 228 -64 1 658 467 185 169 113 chr3 9598840 9599017 -150000766 + B3 SINE B2 30 216 0 1 658 260 111 22 0 chr3 9599439 9599484 -150000299 + (GAAAA)n Simple_repeat Simple_repeat 5 50 0 1 658 210 343 54 36 chr3 9600469 9600581 -149999202 + MIR3 SINE MIR 92 205 -3 1 658 221 0 35 0 chr3 9601761 9601790 -149997993 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 1 658 1057 74 0 0 chr3 9601790 9601925 -149997858 - B1_Mus1 SINE Alu -13 135 1 1 658 356 307 28 35 chr3 9604362 9604507 -149995276 + L2 LINE L2 1288 1431 -1988 1 658 435 293 152 54 chr3 9604959 9605262 -149994521 + MLT1E3 LTR MaLR 307 650 -4 1 658 1038 191 54 0 chr3 9605471 9605675 -149994108 + B3 SINE B2 2 216 0 1 658 277 359 53 66 chr3 9606788 9606940 -149992843 + RSINE1 SINE B4 3 152 -13 1 658 321 47 0 0 chr3 9606945 9606988 -149992795 + (TC)n Simple_repeat Simple_repeat 1 43 0 1 658 396 0 0 0 chr3 9606988 9607031 -149992752 + (CA)n Simple_repeat Simple_repeat 1 44 0 1 658 311 214 0 0 chr3 9607349 9607405 -149992378 + L2a LINE L2 3369 3424 -2 1 658 1022 39 0 0 chr3 9608236 9608364 -149991419 + B1_Mus2 SINE Alu 20 147 0 1 658 198 0 0 0 chr3 9608369 9608391 -149991392 + (A)n Simple_repeat Simple_repeat 1 22 0 1 658 33 73 0 0 chr3 9609175 9609243 -149990540 + GC_rich Low_complexity Low_complexity 1 68 0 1 658 300 264 0 54 chr3 9609332 9609500 -149990283 + CT-rich Low_complexity Low_complexity 2 160 0 1 658 222 230 26 26 chr3 9609503 9609579 -149990204 + (CGG)n Simple_repeat Simple_repeat 1 76 0 1 658 36 82 0 0 chr3 9609594 9609679 -149990104 + GC_rich Low_complexity Low_complexity 1 85 0 1 658 40 49 0 0 chr3 9609864 9609925 -149989858 + GC_rich Low_complexity Low_complexity 1 61 0 1 658 31 58 0 0 chr3 9610007 9610059 -149989724 + GC_rich Low_complexity Low_complexity 1 52 0 1 658 384 317 69 60 chr3 9611901 9612119 -149987664 + RMER15 LTR ERVL 352 571 -4 1 658 926 185 11 28 chr3 9612049 9612227 -149987556 - RMER15 LTR ERVL -7 568 394 1 658 492 285 135 39 chr3 9612239 9612498 -149987285 + Lx8 LINE L1 7184 7467 -6 2 658 241 242 16 16 chr3 9612601 9612664 -149987119 - RSINE1 SINE B4 -87 78 16 2 658 360 0 0 0 chr3 9613684 9613724 -149986059 + (TG)n Simple_repeat Simple_repeat 1 40 0 2 658 779 247 112 14 chr3 9614519 9614786 -149984997 - MTD LTR MaLR -89 332 10 2 658 243 0 0 0 chr3 9614949 9614976 -149984807 + (TCG)n Simple_repeat Simple_repeat 2 28 0 2 658 519 178 313 54 chr3 9615455 9615621 -149984162 + B3 SINE B2 1 209 -7 2 658 948 216 137 4 chr3 9616371 9616641 -149983142 + MTEb LTR MaLR 1 306 -73 2 658 360 216 309 38 chr3 9616642 9616878 -149982905 + Lx9 LINE L1 6380 6679 -965 2 658 702 160 254 12 chr3 9616875 9617115 -149982668 + Lx9 LINE L1 7346 7643 -1 2 658 679 222 159 11 chr3 9617589 9617771 -149982012 + B3 SINE B2 2 210 -6 2 658 248 268 29 67 chr3 9617852 9617956 -149981827 - MLT1J2 LTR MaLR -247 201 102 2 658 490 289 50 39 chr3 9617879 9618059 -149981724 + MER3 DNA MER1_type 14 195 -14 2 658 235 325 154 35 chr3 9619419 9619620 -149980163 - L2 LINE L2 -507 2912 2688 2 658 335 197 33 0 chr3 9619842 9619903 -149979880 + ID4 SINE ID 5 67 -16 2 658 300 271 186 16 chr3 9620112 9620236 -149979547 + LTR33A LTR ERVL 309 453 -67 2 658 559 261 0 44 chr3 9620331 9620467 -149979316 + RSINE1 SINE B4 12 141 -24 2 658 1055 123 7 7 chr3 9620680 9620835 -149978948 - RLTR13D4 LTR ERVK -878 155 1 2 658 932 232 82 168 chr3 9621746 9622150 -149977633 - MTEb LTR MaLR -8 371 3 2 658 229 256 63 13 chr3 9622151 9622230 -149977553 + MLT1A1 LTR MaLR 52 134 -274 2 658 248 161 36 0 chr3 9622291 9622347 -149977436 + CT-rich Low_complexity Low_complexity 3 60 0 2 658 766 332 20 20 chr3 9622618 9622864 -149976919 - B4A SINE B4 -44 248 3 2 658 1718 185 62 14 chr3 9623134 9623491 -149976292 + ORR1D1 LTR MaLR 1 374 0 2 658 731 226 35 95 chr3 9623743 9623943 -149975840 + B3A SINE B2 6 193 -5 2 658 1203 62 0 0 chr3 9624400 9624546 -149975237 + B1_Mus2 SINE Alu 2 147 0 2 658 206 53 0 73 chr3 9624549 9624590 -149975193 + (A)n Simple_repeat Simple_repeat 1 38 0 2 658 231 36 0 0 chr3 9624705 9624733 -149975050 + (TTTC)n Simple_repeat Simple_repeat 1 28 0 2 658 858 35 35 26 chr3 9624733 9624842 -149974941 - B1_Mus2 SINE Alu -6 141 31 2 658 1020 242 14 9 chr3 9624849 9625066 -149974717 - ID_B1 SINE B4 0 224 7 2 658 261 320 123 9 chr3 9625128 9625355 -149974428 + L2 LINE L2 2711 2963 -456 2 658 1209 181 43 91 chr3 9625425 9625751 -149974032 + RLTR11A2 LTR ERVK 43 381 -147 2 658 314 348 35 42 chr3 9625751 9625895 -149973888 - MER5A DNA MER1_type 0 189 47 2 658 573 15 0 0 chr3 9625941 9626007 -149973776 + (TC)n Simple_repeat Simple_repeat 2 67 0 2 658 1374 241 84 28 chr3 9626903 9627286 -149972497 + MTD LTR MaLR 18 405 -14 2 658 1348 80 40 49 chr3 9627524 9627749 -149972034 - Lx LINE L1 -6 6648 6426 2 658 826 175 49 0 chr3 9627785 9627928 -149971855 - B1_Mur4 SINE Alu 0 150 1 2 658 340 267 109 0 chr3 9628310 9628465 -149971318 + L1MD1 LINE L1 6080 6327 -32 2 658 197 353 142 8 chr3 9628731 9628865 -149970918 - MIR SINE MIR -11 251 100 2 658 294 250 67 56 chr3 9629149 9629238 -149970545 - B4 SINE B4 -200 92 3 2 658 432 0 0 0 chr3 9630906 9630954 -149968829 + (TC)n Simple_repeat Simple_repeat 2 49 0 2 658 315 0 0 0 chr3 9630954 9630988 -149968795 + (TG)n Simple_repeat Simple_repeat 2 36 0 2 658 578 227 47 0 chr3 9630988 9631116 -149968667 - B3 SINE B2 -82 134 1 2 658 560 302 0 50 chr3 9631116 9631318 -149968465 - B3A SINE B2 -3 195 4 2 658 189 107 0 0 chr3 9631521 9631549 -149968234 + (A)n Simple_repeat Simple_repeat 1 28 0 2 658 684 170 43 22 chr3 9631554 9631692 -149968091 + B1_Mus1 SINE Alu 4 144 -4 2 658 460 164 34 39 chr3 9631708 9631886 -149967897 + (TATG)n Simple_repeat Simple_repeat 2 178 0 2 658 293 74 72 14 chr3 9631918 9631987 -149967796 + (TATG)n Simple_repeat Simple_repeat 1 73 0 2 658 666 287 0 65 chr3 9631987 9632203 -149967580 - B3 SINE B2 -13 203 2 2 658 375 360 143 74 chr3 9632334 9632808 -149966975 + MLT1F2 LTR MaLR 40 546 -14 2 658 428 298 103 55 chr3 9634156 9634483 -149965300 - L1MB8 LINE L1 -29 6155 5811 2 658 213 39 0 0 chr3 9634484 9634510 -149965273 + (T)n Simple_repeat Simple_repeat 1 26 0 2 658 1268 34 0 0 chr3 9634512 9634658 -149965125 - B1_Mm SINE Alu 0 147 2 2 658 390 42 0 0 chr3 9634696 9634744 -149965039 + (TTTA)n Simple_repeat Simple_repeat 4 51 0 2 658 476 16 16 0 chr3 9634851 9634912 -149964871 + (CA)n Simple_repeat Simple_repeat 2 63 0 2 658 491 318 35 12 chr3 9635213 9635385 -149964398 + Lx8 LINE L1 7033 7208 -265 2 658 1632 194 64 18 chr3 9635386 9635882 -149963901 + RLTR12A LTR ERVK 1 557 -11 2 658 546 304 35 2 chr3 9635934 9636194 -149963589 - HAL1-2a_MD LINE L1 -516 2508 2326 2 658 673 157 0 21 chr3 9636195 9636482 -149963301 + (TGG)n Simple_repeat Simple_repeat 1 280 0 2 658 505 133 27 0 chr3 9636754 9636829 -149962954 - B1_Mus1 SINE Alu -68 80 4 2 658 486 0 0 0 chr3 9636847 9636901 -149962882 + (CA)n Simple_repeat Simple_repeat 2 55 0 2 658 639 257 93 13 chr3 9636903 9637053 -149962730 - B3A SINE B2 -36 162 1 2 658 523 314 236 8 chr3 9637286 9637676 -149962107 + RMER15-int LTR ERVL 2077 2555 -2444 2 658 1437 93 5 0 chr3 9637709 9637902 -149961881 + B2_Mm2 SINE B2 2 195 0 2 658 1131 67 0 0 chr3 9637911 9638045 -149961738 + B1_Mus2 SINE Alu 1 134 -13 2 658 216 0 0 0 chr3 9638045 9638069 -149961714 + (CAA)n Simple_repeat Simple_repeat 1 24 0 2 658 669 67 0 11 chr3 9638219 9638310 -149961473 - B1_Mm SINE Alu -2 145 56 2 658 1153 237 63 3 chr3 9638312 9638596 -149961187 + Lx8 LINE L1 6241 6541 -932 2 658 1710 165 107 12 chr3 9638617 9638954 -149960829 - ORR1D1 LTR MaLR -5 369 1 2 658 727 87 0 0 chr3 9639033 9639136 -149960647 + B2_Mm1a SINE B2 91 193 0 2 658 1140 289 57 59 chr3 9639178 9639378 -149960405 + Lx8 LINE L1 6638 6823 -650 2 658 2286 111 66 179 chr3 9639378 9639683 -149960100 - RLTR41 LTR ERV1 0 446 173 2 658 333 0 0 0 chr3 9639683 9639720 -149960063 + (CA)n Simple_repeat Simple_repeat 2 38 0 2 658 2286 111 66 179 chr3 9639720 9639917 -149959866 - RLTR41 LTR ERV1 -274 172 1 2 658 1140 289 57 59 chr3 9639917 9640205 -149959578 + Lx8 LINE L1 6824 7125 -348 2 658 248 214 149 74 chr3 9640321 9640442 -149959341 + RMER15 LTR ERVL 413 542 -33 2 658 1736 168 203 7 chr3 9640498 9640911 -149958872 + RMER1C Other Other 815 1308 -34 2 658 369 194 52 31 chr3 9640931 9641027 -149958756 + ID_B1 SINE B4 127 224 0 2 658 368 303 77 19 chr3 9641073 9641228 -149958555 - RSINE1 SINE B4 0 165 2 2 658 993 143 245 13 chr3 9641262 9641495 -149958288 - RLTR25B LTR ERVK 0 1028 742 2 658 255 93 0 0 chr3 9641678 9641721 -149958062 + (A)n Simple_repeat Simple_repeat 1 43 0 2 658 3470 149 42 100 chr3 9641731 9642156 -149957627 - RLTR25A LTR ERVK -248 855 478 2 658 1272 158 31 134 chr3 9642156 9642515 -149957268 + RLTRETN_Mm LTR ERVK 1 322 0 2 658 3470 150 49 106 chr3 9642515 9642889 -149956894 - RLTR25A LTR ERVK -505 523 137 2 658 1009 81 73 0 chr3 9642889 9643025 -149956758 + B1_Mm SINE Alu 1 146 -1 2 658 2461 153 89 140 chr3 9643025 9643190 -149956593 - RLTR25A LTR ERVK -892 136 13 2 658 746 269 13 88 chr3 9643382 9643610 -149956173 + B3 SINE B2 1 211 -5 2 658 363 288 43 114 chr3 9643659 9643722 -149956061 - MT2B LTR ERVL -264 337 172 2 658 719 164 9 0 chr3 9643722 9643838 -149955945 - B1_Mus2 SINE Alu -21 126 10 2 658 237 108 0 0 chr3 9643902 9643939 -149955844 + (T)n Simple_repeat Simple_repeat 1 37 0 2 658 426 354 86 55 chr3 9644062 9644319 -149955464 + L1M4 LINE L1 361 625 -5917 2 658 238 270 13 13 chr3 9644560 9644635 -149955148 - L1M4c LINE L1 -5589 795 721 2 658 863 136 7 0 chr3 9644684 9644831 -149954952 + (TTTC)n Simple_repeat Simple_repeat 1 148 0 2 658 567 175 78 0 chr3 9644885 9644988 -149954795 - B1_Mus1 SINE Alu -28 120 10 2 658 441 0 0 0 chr3 9644998 9645047 -149954736 + (TC)n Simple_repeat Simple_repeat 1 49 0 2 658 31 44 0 0 chr3 9645132 9645177 -149954606 + AT_rich Low_complexity Low_complexity 1 45 0 2 658 216 0 0 0 chr3 9645630 9645654 -149954129 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2 658 1919 132 32 73 chr3 9645799 9646141 -149953642 - ORR1A4 LTR MaLR -1 328 1 2 658 897 151 14 7 chr3 9646203 9646350 -149953433 + B1_Mur4 SINE Alu 1 148 -2 2 658 693 37 349 0 chr3 9646605 9646714 -149953069 + B1_Mus1 SINE Alu 2 148 0 2 658 358 198 43 207 chr3 9646976 9647058 -149952725 - B3A SINE B2 -80 118 38 2 658 1111 220 139 3 chr3 9647058 9647382 -149952401 - ORR1D2 LTR MaLR -2 368 1 2 658 358 198 43 207 chr3 9647382 9647439 -149952344 - B3A SINE B2 -161 37 2 2 658 259 343 56 0 chr3 9647860 9648020 -149951763 + L1M4b LINE L1 1634 1830 -5074 2 658 321 268 231 4 chr3 9648243 9648468 -149951315 + Arthur1 DNA Tip100 3670 3945 -2 2 658 1243 85 17 17 chr3 9648695 9648874 -149950909 - B2_Mm2 SINE B2 -1 194 16 2 658 224 254 27 40 chr3 9648810 9648884 -149950899 - ID4 SINE ID -6 77 5 2 658 333 0 0 0 chr3 9648938 9648975 -149950808 + (TTTA)n Simple_repeat Simple_repeat 2 38 0 2 658 982 65 0 0 chr3 9648975 9649099 -149950684 - B1_Mus2 SINE Alu -3 144 21 2 658 467 159 8 130 chr3 9649007 9649130 -149950653 - MT2B LTR ERVL -337 264 157 2 658 463 229 115 0 chr3 9649111 9649207 -149950576 - ID_B1 SINE B4 -26 198 92 2 658 349 255 125 54 chr3 9649207 9649223 -149950560 - B1F SINE Alu -29 120 1 3 658 338 254 118 0 chr3 9650146 9650256 -149949527 + ID_B1 SINE B4 102 224 0 3 658 21 82 0 0 chr3 9650396 9650445 -149949338 + AT_rich Low_complexity Low_complexity 1 49 0 3 658 211 220 0 20 chr3 9650457 9650508 -149949275 + CT-rich Low_complexity Low_complexity 1 50 0 3 658 1151 149 6 0 chr3 9650508 9650689 -149949094 - ORR1B1 LTR MaLR 0 378 197 3 658 4756 245 63 48 chr3 9650688 9651742 -149948041 - ORR1B1-int LTR MaLR -5 1365 296 3 658 252 0 22 65 chr3 9651742 9651788 -149947995 + (CAAA)n Simple_repeat Simple_repeat 2 45 0 3 658 4756 245 63 48 chr3 9651788 9652078 -149947705 - ORR1B1-int LTR MaLR -1075 295 2 3 658 2303 117 81 0 chr3 9652081 9652439 -149947344 - ORR1B1 LTR MaLR -7 387 1 3 658 1190 156 120 17 chr3 9652709 9652950 -149946833 - RMER10A LTR ERVL -169 273 8 3 658 227 178 0 0 chr3 9653106 9653151 -149946632 + G-rich Low_complexity Low_complexity 1 45 0 3 658 287 100 33 0 chr3 9653927 9653987 -149945796 + (CAGA)n Simple_repeat Simple_repeat 2 63 0 3 658 854 288 68 35 chr3 9654077 9654444 -149945339 - MTEa LTR MaLR 0 379 1 3 658 675 25 0 0 chr3 9655563 9655644 -149944139 + (TTTC)n Simple_repeat Simple_repeat 1 81 0 3 658 994 110 7 14 chr3 9655645 9655783 -149944000 - B1_Mur4 SINE Alu -13 137 1 3 658 1497 68 5 0 chr3 9656254 9656444 -149943339 + B2_Mm1t SINE B2 2 192 -1 3 658 3055 86 112 35 chr3 9657053 9657535 -149942248 - MURVY-LTR LTR ERV1 0 519 1 3 658 476 337 83 28 chr3 9657939 9658073 -149941710 - MT2A LTR ERVL -77 456 314 3 658 4289 104 66 37 chr3 9658073 9658433 -149941350 + RMER17A LTR ERVK 1 362 -389 3 658 705 73 0 0 chr3 9658433 9658529 -149941254 + (TCTCC)n Simple_repeat Simple_repeat 3 98 0 3 658 4289 104 66 37 chr3 9658529 9658895 -149940888 + RMER17A LTR ERVK 363 748 -3 3 658 476 337 83 28 chr3 9658895 9659013 -149940770 - MT2A LTR ERVL -220 313 190 3 658 932 212 138 35 chr3 9659080 9659398 -149940385 + RMER10A LTR ERVL 1 351 -91 3 658 349 182 0 33 chr3 9659434 9659525 -149940258 + C-rich Low_complexity Low_complexity 4 91 0 3 658 332 350 43 0 chr3 9659551 9659668 -149940115 - MTEa LTR MaLR -244 135 14 3 658 1089 103 7 0 chr3 9660232 9660378 -149939405 - B1_Mm SINE Alu 0 147 1 3 658 232 409 45 28 chr3 9660523 9660699 -149939084 - LTR88b LTR Gypsy? -549 288 110 3 658 1707 135 48 57 chr3 9660700 9661031 -149938752 + ORR1A4 LTR MaLR 2 329 0 3 658 558 29 0 0 chr3 9661596 9661664 -149938119 + (TCCCC)n Simple_repeat Simple_repeat 4 71 0 3 658 203 204 45 0 chr3 9661724 9661768 -149938015 + (CCTG)n Simple_repeat Simple_repeat 3 48 0 3 658 361 0 41 0 chr3 9661785 9661834 -149937949 + (TCCCC)n Simple_repeat Simple_repeat 1 51 0 3 658 373 259 107 103 chr3 9661995 9662266 -149937517 + RMER20B LTR ERVK 90 361 -266 3 658 384 294 0 9 chr3 9663317 9663427 -149936356 + (TG)n Simple_repeat Simple_repeat 2 110 0 3 658 521 269 276 60 chr3 9663427 9663802 -149935981 + RLTR12B LTR ERVK 6 461 -67 3 658 556 257 45 105 chr3 9663866 9664066 -149935717 - B4 SINE B4 -104 188 1 3 658 1600 169 58 97 chr3 9664448 9664841 -149934942 + RMER10B LTR ERVL 21 398 0 3 658 362 244 217 22 chr3 9665282 9665420 -149934363 + RMER17C-int LTR ERVK 2991 3155 -83 3 658 2130 158 47 18 chr3 9665457 9665844 -149933939 - RMER10B LTR ERVL 0 398 1 3 658 569 300 88 126 chr3 9666733 9666813 -149932970 + B4 SINE B4 10 146 -146 3 658 898 79 0 38 chr3 9666813 9666944 -149932839 + B1_Mus2 SINE Alu 19 144 -3 3 658 569 300 88 126 chr3 9666944 9667027 -149932756 + B4 SINE B4 147 292 0 3 658 513 304 19 54 chr3 9667547 9667752 -149932031 - RLTR23 LTR ERV1 0 430 233 3 658 227 343 49 21 chr3 9668491 9668634 -149931149 + LTRIS2 LTR ERV1 354 500 -64 3 658 522 211 33 131 chr3 9669049 9669202 -149930581 - ID_B1 SINE B4 -1 223 86 3 658 227 297 148 45 chr3 9669310 9669358 -149930425 + B4 SINE B4 49 219 -73 3 658 338 250 19 65 chr3 9669358 9669465 -149930318 + PB1D9 SINE Alu 12 113 -7 3 658 510 295 107 34 chr3 9669537 9669800 -149929983 + B4A SINE B4 1 282 -10 3 658 234 0 0 0 chr3 9669806 9669832 -149929951 + (CA)n Simple_repeat Simple_repeat 2 27 0 3 658 222 105 0 0 chr3 9670338 9670376 -149929407 + (CAGT)n Simple_repeat Simple_repeat 1 38 0 3 658 335 23 23 0 chr3 9670397 9670441 -149929342 + (TG)n Simple_repeat Simple_repeat 2 46 0 3 658 423 234 39 46 chr3 9670990 9671120 -149928663 + RSINE1 SINE B4 2 130 -35 3 658 272 27 0 26 chr3 9671120 9671158 -149928625 + (TAAA)n Simple_repeat Simple_repeat 3 39 0 3 658 253 278 14 0 chr3 9671280 9671352 -149928431 - RSINE1 SINE B4 -47 118 46 3 658 181 222 16 16 chr3 9672019 9672083 -149927700 + CT-rich Low_complexity Low_complexity 3 66 0 3 658 1031 58 0 0 chr3 9672172 9672309 -149927474 - L1Md_F2 LINE L1 -709 5875 5739 3 658 6011 53 19 0 chr3 9672315 9673049 -149926734 + L1Md_F2 LINE L1 5823 6570 -12 3 658 1003 57 0 0 chr3 9673062 9673184 -149926599 + B1_Mus1 SINE Alu 14 135 -13 3 658 231 36 0 0 chr3 9673184 9673212 -149926571 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 3 658 180 0 0 0 chr3 9673212 9673232 -149926551 + (CAA)n Simple_repeat Simple_repeat 2 21 0 3 658 453 348 26 42 chr3 9673639 9673831 -149925952 - B3A SINE B2 -6 192 4 3 658 649 289 159 40 chr3 9673862 9674244 -149925539 - MLT1D LTR MaLR -65 440 1 3 658 2108 100 83 0 chr3 9674393 9674693 -149925090 - ORR1A2 LTR MaLR -2 325 1 3 658 1152 275 46 3 chr3 9675096 9675381 -149924402 - MTEa LTR MaLR -82 297 1 3 658 307 221 40 195 chr3 9676808 9676865 -149922918 - B2_Mm2 SINE B2 -2 193 150 3 658 579 29 0 0 chr3 9676865 9676934 -149922849 + (TATG)n Simple_repeat Simple_repeat 4 72 0 3 658 604 245 133 0 chr3 9676934 9677050 -149922733 - B3 SINE B2 -48 168 48 3 658 790 263 146 29 chr3 9677069 9677343 -149922440 + MTD LTR MaLR 102 407 -12 3 658 183 222 0 0 chr3 9677656 9677701 -149922082 + GA-rich Low_complexity Low_complexity 2 46 0 3 658 690 289 78 111 chr3 9677906 9678144 -149921639 - MTE2b LTR MaLR -1 378 139 3 658 7538 68 26 34 chr3 9678144 9679171 -149920612 - RLTR13D5 LTR ERVK 0 1023 5 3 658 690 289 78 111 chr3 9679171 9679302 -149920481 - MTE2b LTR MaLR -241 138 21 3 658 398 280 32 8 chr3 9679871 9679997 -149919786 + RMER15 LTR ERVL 405 533 -42 3 658 230 0 0 32 chr3 9680125 9680156 -149919627 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 3 658 526 261 92 69 chr3 9680531 9680749 -149919034 + ID_B1 SINE B4 1 223 -1 3 658 387 0 0 0 chr3 9681579 9681622 -149918161 + (GA)n Simple_repeat Simple_repeat 1 43 0 3 658 3336 157 119 2 chr3 9682160 9682767 -149917016 + RLTR33 LTR ERVK 1 678 0 3 658 278 279 101 0 chr3 9683652 9683731 -149916052 - PB1D10 SINE Alu -22 95 9 3 658 1196 209 82 0 chr3 9684034 9684278 -149915505 + ORR1B2 LTR MaLR 71 334 -33 3 658 510 17 0 0 chr3 9684280 9684339 -149915444 + (CA)n Simple_repeat Simple_repeat 2 60 0 3 658 297 0 0 0 chr3 9684342 9684375 -149915408 + (GA)n Simple_repeat Simple_repeat 1 33 0 3 658 1216 156 62 4 chr3 9684399 9684624 -149915159 - ORR1C1 LTR MaLR -140 238 1 3 658 521 319 71 67 chr3 9684636 9684891 -149914892 - B4 SINE B4 -32 260 5 3 658 234 0 0 0 chr3 9686695 9686721 -149913062 + (CA)n Simple_repeat Simple_repeat 2 27 0 3 658 682 295 13 30 chr3 9687852 9688086 -149911697 - MIRc SINE MIR -20 248 19 3 658 610 156 344 0 chr3 9688535 9688695 -149911088 + URR1A DNA MER1_type 9 223 -3 3 658 478 108 12 12 chr3 9688862 9688946 -149910837 + (TCCA)n Simple_repeat Simple_repeat 3 86 0 3 658 594 0 0 0 chr3 9689077 9689143 -149910640 + (GA)n Simple_repeat Simple_repeat 1 66 0 3 658 290 348 0 26 chr3 9690021 9690136 -149909647 - PB1D10 SINE Alu -5 112 1 3 658 636 26 0 0 chr3 9690146 9690224 -149909559 + (CAAAC)n Simple_repeat Simple_repeat 2 79 0 3 658 26 0 0 0 chr3 9692888 9692914 -149906869 + AT_rich Low_complexity Low_complexity 1 26 0 3 658 1085 220 152 7 chr3 9695456 9695726 -149904057 + MTD LTR MaLR 12 320 -99 3 658 226 205 0 0 chr3 9695763 9695802 -149903981 - PB1D10 SINE Alu -28 89 51 3 658 499 314 41 46 chr3 9695871 9696065 -149903718 - B3A SINE B2 -4 194 2 3 658 207 176 0 0 chr3 9696183 9696217 -149903566 + A-rich Low_complexity Low_complexity 4 37 0 3 658 280 281 73 64 chr3 9698031 9698141 -149901642 + L2a LINE L2 3304 3414 -12 3 659 261 291 38 0 chr3 9700134 9700213 -149899570 + ID4 SINE ID 2 83 0 3 659 226 283 82 16 chr3 9701261 9701322 -149898461 + MLT1E2 LTR MaLR 15 79 -548 3 659 380 216 188 9 chr3 9701764 9701876 -149897907 - B3 SINE B2 -22 194 63 3 659 299 316 40 10 chr3 9704181 9704280 -149895503 + MLT1C LTR MaLR 22 123 -344 3 659 239 291 18 0 chr3 9706986 9707041 -149892742 - RSINE1 SINE B4 -108 57 2 3 659 784 157 0 135 chr3 9709272 9709425 -149890358 + B1_Mur3 SINE Alu 2 135 -14 3 659 288 0 0 0 chr3 9709425 9709457 -149890326 + (CAAA)n Simple_repeat Simple_repeat 4 35 0 3 659 784 157 0 135 chr3 9709457 9709473 -149890310 + B1_Mur3 SINE Alu 136 148 -1 3 659 29 28 0 0 chr3 9709495 9709531 -149890252 + AT_rich Low_complexity Low_complexity 1 36 0 3 659 2429 280 23 97 chr3 9709531 9710495 -149889288 - Lx5 LINE L1 -7 7043 6151 3 659 420 289 0 0 chr3 9710859 9710956 -149888827 - ID_B1 SINE B4 -21 203 107 3 659 240 312 0 0 chr3 9711805 9711914 -149887869 + (CCA)n Simple_repeat Simple_repeat 1 109 0 3 659 470 256 182 6 chr3 9713130 9713295 -149886488 - B3A SINE B2 -3 195 2 3 659 645 253 124 34 chr3 9713820 9714086 -149885697 + B4A SINE B4 3 292 0 3 659 212 234 89 69 chr3 9714359 9714460 -149885323 + PB1D10 SINE Alu 2 104 -13 3 659 1939 174 9 6 chr3 9714535 9714882 -149884901 - RLTR15 LTR ERVK 0 359 12 4 659 335 259 58 1 chr3 9715480 9715571 -149884212 + B1F1 SINE Alu 14 105 -12 4 659 252 0 0 0 chr3 9716555 9716583 -149883200 + (GGGTG)n Simple_repeat Simple_repeat 3 30 0 4 659 621 128 0 0 chr3 9716698 9716800 -149882983 + (TG)n Simple_repeat Simple_repeat 2 103 0 4 659 814 232 137 19 chr3 9716807 9717018 -149882765 - B4A SINE B4 -8 284 49 4 659 1402 136 23 0 chr3 9717658 9717878 -149881905 + URR1B DNA MER1_type 1 225 0 4 659 596 211 74 138 chr3 9718733 9718936 -149880847 + B3A SINE B2 9 198 0 4 659 360 247 39 0 chr3 9718935 9719012 -149880771 + B1_Mur2 SINE Alu 68 147 -2 4 659 234 141 29 59 chr3 9719048 9719116 -149880667 + A-rich Low_complexity Low_complexity 1 66 0 4 659 232 298 57 73 chr3 9719349 9719472 -149880311 + PB1 SINE Alu 1 121 -6 4 659 232 343 200 44 chr3 9719789 9720179 -149879604 + L4 LINE RTE 258 708 -1321 4 659 297 264 52 52 chr3 9720706 9720802 -149878981 - PB1D7 SINE Alu -13 107 12 4 659 213 345 46 103 chr3 9720802 9720900 -149878883 - ID_B1 SINE B4 -34 190 8 4 659 359 259 23 114 chr3 9720908 9721039 -149878744 - PB1 SINE Alu -8 119 1 4 659 256 178 14 14 chr3 9721063 9721137 -149878646 + (TA)n Simple_repeat Simple_repeat 1 74 0 4 659 450 280 37 9 chr3 9721363 9721471 -149878312 + B1F2 SINE Alu 1 111 -38 4 659 594 346 21 0 chr3 9721564 9721801 -149877982 - MER47B DNA MER2_type -173 245 4 4 659 1176 185 19 0 chr3 9721921 9722132 -149877651 - B3 SINE B2 0 216 2 4 659 1061 133 0 11 chr3 9722829 9723011 -149876772 + (TA)n Simple_repeat Simple_repeat 1 180 0 4 659 687 123 17 9 chr3 9723860 9723975 -149875808 + URR1B DNA MER1_type 110 225 0 4 659 259 175 0 34 chr3 9724652 9724711 -149875072 + MTEb LTR MaLR 322 378 -1 4 659 758 267 112 19 chr3 9725900 9726167 -149873616 - B4A SINE B4 0 292 1 4 659 314 216 11 33 chr3 9726382 9726564 -149873219 + (CTCA)n Simple_repeat Simple_repeat 3 180 0 4 659 267 240 58 77 chr3 9727186 9727290 -149872493 + PB1D10 SINE Alu 7 108 -9 4 659 282 272 37 0 chr3 9727292 9727373 -149872410 + GA-rich Low_complexity Low_complexity 1 84 0 4 659 537 321 80 42 chr3 9728752 9729015 -149870768 - B4A SINE B4 -18 274 2 4 659 491 373 40 0 chr3 9729717 9729918 -149869865 + MLT1H LTR MaLR 11 219 -330 4 659 2205 79 3 57 chr3 9731167 9731518 -149868265 + IAPLTR1a_Mm LTR ERVK 1 332 -5 4 659 58009 18 6 4 chr3 9731530 9737967 -149861816 + IAPEz-int LTR ERVK 35 6481 0 4 659 2401 86 3 56 chr3 9737967 9738323 -149861460 + IAPLTR1a_Mm LTR ERVK 1 337 0 4 659 386 252 48 19 chr3 9739222 9739327 -149860456 - PB1D7 SINE Alu -3 117 10 4 659 334 275 0 0 chr3 9740987 9741056 -149858727 + ID4 SINE ID 14 82 -1 4 659 334 286 66 0 chr3 9741056 9741078 -149858705 + ID_B1 SINE B4 14 110 -114 4 659 1120 189 14 5 chr3 9741082 9741295 -149858488 + B3 SINE B2 2 216 0 4 659 1103 87 0 32 chr3 9741556 9741710 -149858073 - B1_Mur4 SINE Alu 0 150 2 4 659 777 261 9 37 chr3 9741792 9742007 -149857776 - B3 SINE B2 -6 210 2 4 659 309 51 0 0 chr3 9742223 9742262 -149857521 + (CA)n Simple_repeat Simple_repeat 1 39 0 4 659 25951 136 19 18 chr3 9742265 9743311 -149856472 + Lx LINE L1 1109 2116 -3767 4 659 1110 75 0 20 chr3 9743311 9743461 -149856322 - B1_Mus2 SINE Alu 0 147 1 4 659 25951 153 18 23 chr3 9743461 9744810 -149854973 + Lx LINE L1 2117 3481 -2402 4 659 2279 36 14 4 chr3 9744810 9745089 -149854694 + L1Md_F3 LINE L1 6303 6584 0 4 659 25951 132 18 22 chr3 9745089 9748253 -149851530 + Lx LINE L1 3482 6653 -1 4 659 334 245 50 10 chr3 9748626 9748725 -149851058 - Lx4B LINE L1 0 7058 6956 4 659 403 266 83 21 chr3 9748724 9748916 -149850867 - Lx3C LINE L1 -44 6932 6729 4 659 30 0 0 0 chr3 9750503 9750533 -149849250 + AT_rich Low_complexity Low_complexity 1 30 0 4 659 310 237 22 73 chr3 9753161 9753286 -149846497 - B3A SINE B2 -9 207 80 4 659 306 115 110 13 chr3 9753335 9753406 -149846377 + B1_Mus1 SINE Alu 3 77 -72 4 659 1036 282 128 36 chr3 9754338 9755614 -149844169 + L1MB7 LINE L1 4754 6173 -5 4 659 293 212 141 0 chr3 9758261 9758346 -149841437 + PB1D10 SINE Alu 1 97 -20 4 659 225 0 0 0 chr3 9758674 9758699 -149841084 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 4 659 305 43 0 42 chr3 9759046 9759094 -149840689 + (TCTCTG)n Simple_repeat Simple_repeat 2 47 0 4 659 240 111 0 0 chr3 9759389 9759425 -149840358 + (CA)n Simple_repeat Simple_repeat 2 37 0 4 659 290 304 17 35 chr3 9759517 9759633 -149840150 + MLT1C LTR MaLR 349 462 -5 4 659 881 171 193 0 chr3 9759877 9760058 -149839725 - B3 SINE B2 0 216 1 4 659 22 0 0 0 chr3 9760068 9760090 -149839693 + AT_rich Low_complexity Low_complexity 1 22 0 4 659 912 188 0 0 chr3 9761018 9761167 -149838616 + B1_Mur2 SINE Alu 1 149 0 4 659 23 0 0 0 chr3 9761182 9761205 -149838578 + AT_rich Low_complexity Low_complexity 1 23 0 4 659 536 249 120 21 chr3 9762304 9762538 -149837245 - B4A SINE B4 -17 275 19 4 659 21 0 0 0 chr3 9762726 9762747 -149837036 + AT_rich Low_complexity Low_complexity 1 21 0 4 659 184 282 8 93 chr3 9763275 9763382 -149836401 - L3 LINE CR1 -939 3550 3453 4 659 3774 16 121 0 chr3 9763382 9763822 -149835961 - MT2_Mm LTR ERVL 0 493 1 4 659 184 282 8 93 chr3 9763822 9763843 -149835940 - L3 LINE CR1 -1037 3452 3433 4 659 264 328 43 28 chr3 9764416 9764557 -149835226 + MLT1C LTR MaLR 316 458 -9 4 659 2150 214 36 22 chr3 9765403 9765847 -149833936 + Lx6 LINE L1 7008 7457 -3 4 659 2318 152 82 3 chr3 9765848 9766238 -149833545 - MTC LTR MaLR 0 421 1 4 659 1224 48 0 0 chr3 9766633 9766779 -149833004 - B1_Mus1 SINE Alu -1 147 2 4 659 247 250 56 0 chr3 9769992 9770064 -149829719 - B1F1 SINE Alu -61 88 13 4 659 1900 197 8 13 chr3 9770868 9771264 -149828519 - MTD LTR MaLR -24 395 2 4 659 8048 78 14 0 chr3 9771710 9773078 -149826705 + L1_Mus3 LINE L1 5248 6634 -4 4 659 682 221 15 0 chr3 9773097 9773233 -149826550 + B1_Mur4 SINE Alu 1 138 -12 4 659 378 0 0 0 chr3 9773233 9773275 -149826508 + (CAAAA)n Simple_repeat Simple_repeat 3 44 0 4 659 271 286 102 68 chr3 9774801 9774977 -149824806 - MER58B DNA MER1_type -2 339 158 4 659 190 164 70 35 chr3 9775167 9775224 -149824559 + MIR SINE MIR 60 118 -144 4 659 319 243 18 36 chr3 9775289 9775400 -149824383 - MIR SINE MIR -84 178 70 4 659 342 194 28 131 chr3 9776828 9776935 -149822848 + B4A SINE B4 197 292 0 4 659 224 219 0 0 chr3 9776935 9776976 -149822807 + (CA)n Simple_repeat Simple_repeat 1 41 0 4 659 1201 216 116 49 chr3 9777093 9777438 -149822345 + Lx7 LINE L1 7063 7430 -266 4 659 304 382 0 0 chr3 9777454 9777632 -149822151 + (TG)n Simple_repeat Simple_repeat 1 178 0 4 659 264 386 0 0 chr3 9777672 9777848 -149821935 + (TG)n Simple_repeat Simple_repeat 1 176 0 4 659 226 391 0 0 chr3 9777801 9777975 -149821808 + (TATATG)n Simple_repeat Simple_repeat 6 179 0 4 659 287 363 0 32 chr3 9777936 9778167 -149821616 + (TG)n Simple_repeat Simple_repeat 1 223 0 4 659 302 384 0 0 chr3 9778200 9778544 -149821239 + (TG)n Simple_repeat Simple_repeat 1 344 0 4 659 469 257 156 24 chr3 9778590 9778801 -149820982 + Lx7 LINE L1 7447 7685 -11 4 659 189 258 45 0 chr3 9780601 9780667 -149819116 - MIRm SINE MIR -135 141 73 4 659 265 276 42 33 chr3 9781177 9781297 -149818486 - MLT1A0 LTR MaLR -229 136 16 4 659 198 0 0 0 chr3 9781375 9781397 -149818386 + (CAA)n Simple_repeat Simple_repeat 3 24 0 4 659 691 223 195 38 chr3 9781630 9781953 -149817830 - ORR1D1 LTR MaLR 0 374 1 4 659 294 132 0 0 chr3 9782761 9782814 -149816969 + (C)n Simple_repeat Simple_repeat 1 53 0 4 659 224 317 23 39 chr3 9784086 9784214 -149815569 - L2c LINE L2 -219 3168 3043 4 659 931 124 14 7 chr3 9784286 9784432 -149815351 + B1_Mus2 SINE Alu 1 147 0 4 659 867 28 0 0 chr3 9785424 9785530 -149814253 + (GGA)n Simple_repeat Simple_repeat 3 108 0 4 659 2710 75 25 0 chr3 9786100 9786461 -149813322 + L1Md_F2 LINE L1 6213 6582 0 4 659 645 272 26 37 chr3 9787531 9787722 -149812061 + B3 SINE B2 21 209 -7 4 659 489 223 0 0 chr3 9787978 9788108 -149811675 + GA-rich Low_complexity Low_complexity 1 130 0 4 659 3497 283 70 155 chr3 9789256 9790745 -149809038 + L1_Mur3 LINE L1 2439 3914 -1966 4 659 255 179 18 0 chr3 9790745 9790801 -149808982 + RLTR12B LTR ERVK 9 65 -463 4 659 3497 283 70 155 chr3 9790801 9790883 -149808900 + L1_Mur3 LINE L1 3915 3995 -1885 4 659 327 293 56 74 chr3 9790883 9791152 -149808631 + RLTR15 LTR ERVK 59 322 -37 4 659 3497 283 70 155 chr3 9791152 9791717 -149808066 + L1_Mur3 LINE L1 3996 4558 -1322 4 659 3323 44 179 2 chr3 9791717 9792152 -149807631 + RLTR1B LTR ERV1 1 512 0 4 659 3497 283 70 155 chr3 9792152 9792824 -149806959 + L1_Mur3 LINE L1 4559 5307 -573 4 659 222 292 71 20 chr3 9793451 9793549 -149806234 - L2a LINE L2 -13 3413 3311 4 659 486 290 55 103 chr3 9793777 9794088 -149805695 - ORR1E LTR MaLR -38 321 26 4 659 464 257 139 0 chr3 9794483 9794627 -149805156 + MER5A1 DNA MER1_type 2 165 -1 4 659 283 298 26 72 chr3 9796855 9797007 -149802776 + MER5A1 DNA MER1_type 19 163 -3 4 659 581 281 35 54 chr3 9797294 9797497 -149802286 - B3 SINE B2 -12 204 6 4 659 224 240 198 0 chr3 9799328 9799424 -149800359 + B1F SINE Alu 33 147 -2 4 659 187 257 248 0 chr3 9799877 9799978 -149799805 - MIR SINE MIR -115 147 22 4 659 412 252 81 0 chr3 9800227 9800350 -149799433 - U1 snRNA snRNA -18 147 15 4 659 406 96 27 0 chr3 9800350 9800423 -149799360 + (TCCC)n Simple_repeat Simple_repeat 3 77 0 4 659 519 314 39 7 chr3 9800429 9800583 -149799200 - B3A SINE B2 -35 163 5 5 659 213 65 0 0 chr3 9801596 9801627 -149798156 + (A)n Simple_repeat Simple_repeat 1 31 0 5 659 377 255 82 74 chr3 9801866 9802033 -149797750 - L1MDa LINE L1 -889 5648 5484 5 659 771 247 16 5 chr3 9802113 9802300 -149797483 - L1MDa LINE L1 -1435 5102 4914 5 659 480 324 0 0 chr3 9802792 9802971 -149796812 + GA-rich Low_complexity Low_complexity 1 179 0 5 659 243 0 318 0 chr3 9802926 9803058 -149796725 + (CAGG)n Simple_repeat Simple_repeat 2 175 0 5 659 395 0 0 162 chr3 9803013 9803642 -149796141 + (CAGAG)n Simple_repeat Simple_repeat 1 526 0 5 659 578 103 82 0 chr3 9803645 9803742 -149796041 + B1_Mur4 SINE Alu 43 147 -3 5 659 744 266 135 7 chr3 9803773 9804061 -149795722 - L1MDa LINE L1 -4517 2116 1792 5 659 256 323 0 0 chr3 9804162 9804258 -149795525 - MLT1D LTR MaLR -3 502 407 5 659 648 280 58 17 chr3 9804531 9804822 -149794961 - L1MDa LINE L1 -5005 1628 1326 5 659 531 316 115 54 chr3 9805442 9805903 -149793880 - L1MDa LINE L1 -6123 510 22 5 659 297 271 12 12 chr3 9808149 9808235 -149791548 + MER58C DNA MER1_type 128 213 -2 5 659 257 151 19 0 chr3 9808248 9808301 -149791482 + (TG)n Simple_repeat Simple_repeat 2 55 0 5 659 251 234 238 38 chr3 9808351 9808511 -149791272 + L1ME3B LINE L1 5750 5941 -299 5 659 613 229 147 16 chr3 9809735 9809926 -149789857 - B3 SINE B2 0 216 1 5 659 500 294 60 20 chr3 9810118 9810319 -149789464 - LTR40a LTR ERVL -310 209 1 5 659 190 0 67 0 chr3 9810638 9810668 -149789115 + (TTG)n Simple_repeat Simple_repeat 2 33 0 5 659 1251 34 7 0 chr3 9810668 9810815 -149788968 - B1_Mus1 SINE Alu 0 148 1 5 659 757 215 133 11 chr3 9812791 9812979 -149786804 + B3 SINE B2 4 214 -2 5 659 1319 203 101 37 chr3 9813201 9813549 -149786234 - ORR1D1 LTR MaLR 0 374 5 5 659 688 264 6 0 chr3 9813544 9813703 -149786080 + MER2B DNA MER2_type 177 336 0 5 659 2459 108 64 15 chr3 9813763 9814167 -149785616 + Lx LINE L1 6231 6654 0 5 659 475 299 82 0 chr3 9814180 9814314 -149785469 + B3A SINE B2 24 168 -30 5 659 303 192 0 0 chr3 9814335 9814408 -149785375 + (CA)n Simple_repeat Simple_repeat 1 73 0 5 659 375 289 11 0 chr3 9815970 9816060 -149783723 - PB1D10 SINE Alu -21 96 6 5 659 39 22 0 0 chr3 9816101 9816147 -149783636 + AT_rich Low_complexity Low_complexity 1 46 0 5 659 2497 147 33 9 chr3 9816147 9816572 -149783211 - Lx2B LINE L1 -27 6973 6539 5 659 338 326 47 0 chr3 9816659 9816788 -149782995 + MIRc SINE MIR 71 205 -63 5 659 186 43 0 0 chr3 9816933 9816956 -149782827 + (TCCC)n Simple_repeat Simple_repeat 4 26 0 5 659 695 294 43 0 chr3 9816960 9817171 -149782612 - ID_B1 SINE B4 -3 221 2 5 659 447 330 27 11 chr3 9817335 9817522 -149782261 - B3A SINE B2 -1 197 8 5 659 240 324 67 13 chr3 9817573 9817723 -149782060 + MER5B DNA MER1_type 19 176 -2 5 659 185 59 0 56 chr3 9818082 9818118 -149781665 + (CAAAA)n Simple_repeat Simple_repeat 1 34 0 5 659 366 271 73 0 chr3 9818693 9818789 -149780994 - B4A SINE B4 -187 105 3 5 659 297 75 0 0 chr3 9818811 9818851 -149780932 + (CAT)n Simple_repeat Simple_repeat 1 40 0 5 659 723 75 9 0 chr3 9818888 9818994 -149780789 - ORR1B1 LTR MaLR -1 393 287 5 659 7992 85 14 5 chr3 9818994 9820847 -149778936 + L1_Mus3 LINE L1 4764 6638 0 5 659 920 166 6 0 chr3 9820877 9821040 -149778743 - ORR1B1 LTR MaLR -77 317 154 5 659 468 200 20 0 chr3 9821508 9821608 -149778175 - B1_Mur1 SINE Alu -20 129 28 5 659 621 204 0 0 chr3 9822111 9822243 -149777540 + (CAGAGA)n Simple_repeat Simple_repeat 1 132 0 5 659 579 29 0 0 chr3 9823162 9823231 -149776552 + (TC)n Simple_repeat Simple_repeat 2 70 0 5 659 491 182 130 16 chr3 9823256 9823379 -149776404 - B1F2 SINE Alu -1 148 12 5 659 216 0 0 0 chr3 9824605 9824629 -149775154 + (TG)n Simple_repeat Simple_repeat 1 24 0 5 659 1212 171 13 39 chr3 9825539 9825770 -149774013 + URR1B DNA MER1_type 1 225 0 5 659 292 222 139 61 chr3 9827050 9827165 -149772618 + PB1 SINE Alu 2 125 -2 5 659 279 0 0 0 chr3 9828644 9828675 -149771108 + (CA)n Simple_repeat Simple_repeat 2 32 0 5 659 191 338 95 25 chr3 9829149 9829307 -149770476 + MIRb SINE MIR 79 247 -21 5 659 444 248 0 0 chr3 9829625 9829726 -149770057 - 5S rRNA rRNA -18 103 3 5 659 381 93 0 0 chr3 9830138 9830192 -149769591 + (CA)n Simple_repeat Simple_repeat 1 54 0 5 660 184 250 0 0 chr3 9831123 9831171 -149768612 + MIRc SINE MIR 106 153 -115 5 660 223 221 25 49 chr3 9831418 9831499 -149768284 - MIR SINE MIR -72 190 112 5 660 219 170 21 21 chr3 9833709 9833757 -149766026 + (CGGGG)n Simple_repeat Simple_repeat 1 48 0 5 660 205 287 53 11 chr3 9834011 9834106 -149765677 + MER5B DNA MER1_type 35 133 -45 5 660 995 237 196 19 chr3 9834960 9835282 -149764501 - MTEa LTR MaLR 0 379 1 5 660 904 284 36 22 chr3 9835377 9835651 -149764132 + B4A SINE B4 15 292 0 5 660 2185 100 45 3 chr3 9835837 9836149 -149763634 + ORR1A2 LTR MaLR 1 325 -2 5 660 704 262 10 35 chr3 9836742 9836944 -149762839 - B3A SINE B2 -1 197 1 5 660 180 0 0 0 chr3 9836951 9836971 -149762812 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 5 660 745 259 125 100 chr3 9837041 9837410 -149762373 - MTEa LTR MaLR -1 378 1 5 660 21 0 0 0 chr3 9837496 9837517 -149762266 + AT_rich Low_complexity Low_complexity 1 21 0 5 660 315 0 0 0 chr3 9837680 9837715 -149762068 + (TC)n Simple_repeat Simple_repeat 2 36 0 5 660 3881 23 5 0 chr3 9838148 9838582 -149761201 + RLTR10C LTR ERVK 1 436 0 5 660 233 333 18 45 chr3 9839223 9839333 -149760450 - B1_Mus1 SINE Alu -41 107 1 5 660 279 290 59 101 chr3 9840519 9840885 -149758898 + ORR1D2 LTR MaLR 9 363 -11 5 660 396 0 0 0 chr3 9841193 9841237 -149758546 + (TG)n Simple_repeat Simple_repeat 1 44 0 5 660 315 177 0 0 chr3 9842129 9842191 -149757592 + (CA)n Simple_repeat Simple_repeat 1 62 0 5 660 294 288 77 52 chr3 9842416 9842610 -149757173 + MER21B LTR ERV1 178 376 -487 5 660 705 276 28 6 chr3 9843155 9843337 -149756446 + B3 SINE B2 1 186 -30 5 660 342 0 0 0 chr3 9843338 9843376 -149756407 + (CATA)n Simple_repeat Simple_repeat 2 39 0 5 660 297 0 0 0 chr3 9843913 9843946 -149755837 + (CAAAA)n Simple_repeat Simple_repeat 2 34 0 5 660 544 287 67 110 chr3 9844660 9845016 -149754767 + ORR1E LTR MaLR 14 354 -5 5 660 232 366 70 21 chr3 9845544 9845755 -149754028 - MIR SINE MIR -23 245 25 5 660 244 233 0 32 chr3 9846028 9846090 -149753693 + GA-rich Low_complexity Low_complexity 1 60 0 5 660 296 318 89 22 chr3 9846904 9847084 -149752699 + LTR79 LTR ERVL 5 196 -331 5 660 787 296 14 69 chr3 9848138 9848428 -149751355 - B4 SINE B4 -16 276 3 5 660 230 146 0 40 chr3 9848563 9848613 -149751170 + (TATATG)n Simple_repeat Simple_repeat 3 50 0 5 660 804 244 24 6 chr3 9849306 9849475 -149750308 - Lx9 LINE L1 -920 6724 6553 5 660 999 45 0 0 chr3 9850251 9850384 -149749399 + B1_Mm SINE Alu 6 138 -9 5 660 318 26 0 0 chr3 9850384 9850423 -149749360 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 5 660 895 96 7 30 chr3 9851516 9851665 -149748118 - B1_Mur4 SINE Alu -1 149 2 5 660 4196 83 6 3 chr3 9851831 9852615 -149747168 - L1_Mus4 LINE L1 -505 6131 5345 5 660 209 57 0 28 chr3 9853741 9853777 -149746006 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 5 660 239 209 69 11 chr3 9854069 9854156 -149745627 - L1MA5 LINE L1 0 6300 6209 5 660 765 303 69 56 chr3 9854138 9854603 -149745180 - L1MA5 LINE L1 -264 6036 5566 5 660 236 203 47 0 chr3 9855118 9855182 -149744601 + (TA)n Simple_repeat Simple_repeat 2 68 0 5 660 194 271 0 0 chr3 9855523 9855582 -149744201 + MIRc SINE MIR 197 255 -13 5 660 858 173 0 0 chr3 9856626 9856788 -149742995 + (TG)n Simple_repeat Simple_repeat 2 163 0 5 660 21 36 0 0 chr3 9856817 9856845 -149742938 + AT_rich Low_complexity Low_complexity 1 28 0 5 660 2296 80 0 0 chr3 9857117 9857417 -149742366 + L1_Mus2 LINE L1 6263 6562 -4 5 660 207 0 0 0 chr3 9857454 9857477 -149742306 + (A)n Simple_repeat Simple_repeat 1 23 0 5 660 213 121 0 0 chr3 9857847 9857880 -149741903 + (TTTCC)n Simple_repeat Simple_repeat 3 35 0 5 660 245 242 258 44 chr3 9858078 9858307 -149741476 + B4 SINE B4 1 278 -14 5 660 27 62 0 0 chr3 9859404 9859452 -149740331 + AT_rich Low_complexity Low_complexity 1 48 0 5 660 323 337 116 23 chr3 9859699 9859957 -149739826 + B4A SINE B4 2 283 -9 5 660 971 231 158 13 chr3 9861283 9861594 -149738189 - ORR1E LTR MaLR -2 357 2 5 660 282 357 30 37 chr3 9862976 9863110 -149736673 + MLT1A1 LTR MaLR 220 352 -56 5 660 183 368 0 0 chr3 9863232 9863308 -149736475 - L2 LINE L2 -529 2890 2815 5 660 202 352 143 59 chr3 9864700 9865056 -149734727 - L2b LINE L2 0 3375 2990 5 660 449 209 36 18 chr3 9865106 9865209 -149734574 + PB1D10 SINE Alu 1 107 -10 5 660 342 0 0 0 chr3 9865209 9865247 -149734536 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 5 660 774 311 77 7 chr3 9866608 9866880 -149732903 + B4A SINE B4 2 292 0 5 660 994 203 113 14 chr3 9867365 9867640 -149732143 + Lx9 LINE L1 6787 7088 -556 5 660 2065 217 88 17 chr3 9867814 9868348 -149731435 + Lx9 LINE L1 7065 7636 -8 5 660 6776 74 8 31 chr3 9868733 9869670 -149730113 - Lx3_Mus LINE L1 -8 7001 6087 5 660 21 36 0 0 chr3 9869707 9869735 -149730048 + AT_rich Low_complexity Low_complexity 1 28 0 5 660 593 111 86 0 chr3 9869736 9869853 -149729930 - Lx3_Mus LINE L1 -9 7000 6874 5 660 3501 76 28 8 chr3 9869854 9870467 -149729316 - Lx3_Mus LINE L1 -940 6069 5450 5 660 31983 119 28 24 chr3 9870463 9876742 -149723041 - L1_Mus1 LINE L1 0 6567 261 6 660 2628 81 19 3 chr3 9876767 9877128 -149722655 - L1_Mur1 LINE L1 -423 5463 5097 6 660 6765 67 12 1 chr3 9877134 9878012 -149721771 + L1_Mur1 LINE L1 4220 5107 -779 6 660 330 26 0 0 chr3 9878392 9878431 -149721352 + (TG)n Simple_repeat Simple_repeat 1 39 0 6 660 747 121 0 0 chr3 9878431 9878571 -149721212 + (GA)n Simple_repeat Simple_repeat 2 141 0 6 660 2942 58 63 2 chr3 9879786 9880183 -149719600 - BGLII LTR ERVK 0 421 1 6 660 335 312 223 9 chr3 9881025 9881365 -149718418 - Lx8 LINE L1 -59 7414 7002 6 660 387 293 81 57 chr3 9881523 9881646 -149718137 - PB1 SINE Alu 0 127 2 6 660 296 315 0 14 chr3 9881585 9881659 -149718124 - B4A SINE B4 -146 146 74 6 660 2416 150 25 332 chr3 9882080 9883078 -149716705 + RLTR17 LTR ERVK 1 692 0 6 660 441 0 0 0 chr3 9883248 9883297 -149716486 + (GA)n Simple_repeat Simple_repeat 2 50 0 6 660 220 176 36 73 chr3 9883445 9883500 -149716283 + RSINE1 SINE B4 53 105 -60 6 660 729 63 0 0 chr3 9885291 9885386 -149714397 + (TCCC)n Simple_repeat Simple_repeat 1 95 0 6 660 214 260 0 20 chr3 9885402 9885453 -149714330 - L2c LINE L2 -16 3371 3322 6 660 450 176 41 16 chr3 9886400 9886521 -149713262 + Lx4B LINE L1 6918 7041 -17 6 660 192 77 0 0 chr3 9886521 9886547 -149713236 + (TTAA)n Simple_repeat Simple_repeat 3 28 0 6 660 243 268 46 11 chr3 9886711 9886798 -149712985 - MIR SINE MIR -89 173 84 6 660 582 306 18 41 chr3 9886806 9887024 -149712759 + MER20 DNA MER1_type 1 213 -6 6 660 414 57 0 0 chr3 9887999 9888052 -149711731 + (CA)n Simple_repeat Simple_repeat 1 53 0 6 660 644 295 106 13 chr3 9888066 9888368 -149711415 - Lx8 LINE L1 -155 7318 6989 6 660 794 245 34 21 chr3 9888532 9888820 -149710963 - MT2B LTR ERVL -59 542 92 6 660 274 0 0 159 chr3 9888821 9888959 -149710824 + (CAGAG)n Simple_repeat Simple_repeat 5 120 0 6 660 236 106 0 113 chr3 9888962 9889015 -149710768 + 4.5SRNA scRNA scRNA 40 86 -8 6 660 525 144 10 30 chr3 9888968 9889068 -149710715 + B1_Mus2 SINE Alu 42 139 -8 6 660 681 58 0 28 chr3 9889070 9889176 -149710607 + (GAAA)n Simple_repeat Simple_repeat 2 104 0 6 660 416 175 12 0 chr3 9889176 9889256 -149710527 - MT2B LTR ERVL -452 81 1 6 660 7933 164 30 12 chr3 9889449 9890034 -149709749 - Lx2 LINE L1 0 6997 6391 6 660 324 0 0 0 chr3 9890034 9890070 -149709713 + (TTG)n Simple_repeat Simple_repeat 1 36 0 6 660 7933 163 19 6 chr3 9890070 9891033 -149708750 - Lx2 LINE L1 -607 6390 5423 6 660 1420 39 39 11 chr3 9891164 9891344 -149708439 + B2_Mm2 SINE B2 3 187 -8 6 660 5089 140 42 69 chr3 9891386 9892541 -149707242 + L1VL2 LINE L1 4 1123 -2492 6 660 2137 206 20 7 chr3 9892539 9892989 -149706794 - Lx7 LINE L1 -437 7259 6804 6 660 342 0 0 0 chr3 9893952 9893990 -149705793 + (TAAAA)n Simple_repeat Simple_repeat 3 40 0 6 660 1729 214 194 25 chr3 9894044 9894529 -149705254 + RMER2 LTR ERV1 1 567 0 6 660 207 343 86 14 chr3 9895075 9895214 -149704569 - L2 LINE L2 -515 2904 2756 6 660 284 245 128 0 chr3 9895515 9895609 -149704174 + ORR1D1 LTR MaLR 1 106 -268 6 660 491 324 42 40 chr3 9896337 9896624 -149703159 - B4A SINE B4 -2 290 6 6 660 2946 218 96 23 chr3 9896988 9897673 -149702110 + Lx6 LINE L1 6722 7456 -4 6 660 2906 106 18 24 chr3 9898189 9898644 -149701139 + RLTR11B LTR ERVK 2 453 0 6 660 8611 145 14 10 chr3 9899699 9901165 -149698618 - Lx2 LINE L1 0 6997 5520 6 660 3046 120 2 15 chr3 9901163 9901638 -149698145 + L1_Mur2 LINE L1 3732 4200 -1677 6 660 507 318 22 11 chr3 9903033 9903214 -149696569 - MLT1F LTR MaLR -91 457 275 6 660 28 29 0 0 chr3 9903932 9903967 -149695816 + AT_rich Low_complexity Low_complexity 1 35 0 6 660 473 182 0 0 chr3 9904011 9904088 -149695695 + Lx7 LINE L1 6122 6198 -1498 6 660 34328 70 0 20 chr3 9904080 9908619 -149691164 + L1Md_F2 LINE L1 511 4963 -920 6 660 3299 59 69 41 chr3 9908619 9909081 -149690702 - IAPLTR2_Mm LTR ERVK 0 475 1 6 660 34328 64 0 2 chr3 9909081 9909710 -149690073 + L1Md_F2 LINE L1 4964 5586 -297 6 660 7977 49 22 0 chr3 9909710 9910677 -149689106 + L1Md_F2 LINE L1 5587 6574 -8 6 660 225 0 0 0 chr3 9910690 9910715 -149689068 + (CA)n Simple_repeat Simple_repeat 2 26 0 6 660 1953 215 16 11 chr3 9910718 9911094 -149688689 + Lx7 LINE L1 6171 6548 -1148 6 660 275 254 149 94 chr3 9911095 9911330 -149688453 - MLT1F LTR MaLR -140 250 3 6 660 414 0 0 0 chr3 9911392 9911438 -149688345 + (TC)n Simple_repeat Simple_repeat 1 46 0 6 660 339 25 0 0 chr3 9911438 9911477 -149688306 + (CA)n Simple_repeat Simple_repeat 1 40 0 6 660 22 0 0 0 chr3 9912534 9912556 -149687227 + AT_rich Low_complexity Low_complexity 1 22 0 6 660 601 286 110 55 chr3 9913115 9913441 -149686342 + MTEa LTR MaLR 23 366 -13 6 660 930 209 173 37 chr3 9914350 9914673 -149685110 + MTEb LTR MaLR 1 367 -12 6 660 1361 50 61 11 chr3 9914965 9915146 -149684637 - B2_Mm2 SINE B2 -4 191 2 6 660 716 266 25 115 chr3 9915858 9916058 -149683725 - B3A SINE B2 -2 193 12 6 660 1063 203 45 53 chr3 9916150 9916218 -149683565 - MTD LTR MaLR -144 275 211 6 660 2513 169 14 25 chr3 9916218 9916703 -149683080 - Lx4B LINE L1 0 7058 6579 6 660 1063 203 45 53 chr3 9916703 9916899 -149682884 - MTD LTR MaLR -209 210 13 6 660 267 31 0 0 chr3 9917678 9917710 -149682073 + (TA)n Simple_repeat Simple_repeat 2 33 0 6 660 852 200 23 0 chr3 9917812 9917987 -149681796 + Lx5 LINE L1 6872 7050 0 6 660 1102 169 15 0 chr3 9918005 9918200 -149681583 + ORR1C1 LTR MaLR 181 378 0 6 660 255 93 0 0 chr3 9918271 9918314 -149681469 + (TCTG)n Simple_repeat Simple_repeat 2 44 0 6 660 638 159 0 6 chr3 9918327 9918492 -149681291 + CT-rich Low_complexity Low_complexity 1 164 0 6 660 188 277 0 0 chr3 9918786 9918833 -149680950 - MIR SINE MIR -56 152 106 6 660 1925 115 6 9 chr3 9919339 9919656 -149680127 + IAPLTR2b LTR ERVK 1 316 -11 6 660 413 363 6 18 chr3 9920409 9920580 -149679203 - AmnSINE1 SINE SINE -392 183 15 6 660 1882 27 0 5 chr3 9920981 9921202 -149678581 + L1Md_F2 LINE L1 6349 6568 -14 6 660 2112 138 14 17 chr3 9921689 9922049 -149677734 - ORR1B2 LTR MaLR -8 359 1 6 660 243 266 16 0 chr3 9922274 9922338 -149677445 + tRNA-Ala-GCY_ tRNA tRNA 4 68 -7 6 660 675 131 0 0 chr3 9923209 9923308 -149676475 + B3 SINE B2 1 99 -117 6 660 29 0 0 0 chr3 9923330 9923359 -149676424 + AT_rich Low_complexity Low_complexity 1 29 0 6 660 297 242 16 0 chr3 9923545 9923607 -149676176 - ID4_ SINE ID -17 66 4 6 660 864 102 29 0 chr3 9924249 9924386 -149675397 + B1_Mus1 SINE Alu 6 146 -2 6 660 453 238 29 0 chr3 9924990 9925095 -149674688 + PB1D7 SINE Alu 6 113 -7 6 660 477 122 0 0 chr3 9925098 9925172 -149674611 + (CAGC)n Simple_repeat Simple_repeat 1 74 0 6 660 996 111 0 0 chr3 9925172 9925352 -149674431 + (TCCA)n Simple_repeat Simple_repeat 1 180 0 6 660 423 155 0 0 chr3 9925353 9925437 -149674346 + (CCAA)n Simple_repeat Simple_repeat 4 87 0 6 660 483 268 43 7 chr3 9926937 9927067 -149672716 + MER2 DNA MER2_type 88 222 -123 6 660 542 274 44 15 chr3 9927067 9927204 -149672579 + RSINE1 SINE B4 3 143 -22 6 660 489 17 0 0 chr3 9927215 9927273 -149672510 + (CA)n Simple_repeat Simple_repeat 2 59 0 6 660 218 205 0 0 chr3 9927293 9927332 -149672451 + (TATATG)n Simple_repeat Simple_repeat 1 39 0 6 660 252 185 43 58 chr3 9927337 9927406 -149672377 + MER2 DNA MER2_type 237 304 -41 6 660 369 0 0 0 chr3 9927834 9927875 -149671908 + (CA)n Simple_repeat Simple_repeat 1 41 0 6 660 387 0 0 0 chr3 9927900 9927943 -149671840 + (TA)n Simple_repeat Simple_repeat 2 44 0 6 660 372 43 0 0 chr3 9927943 9927988 -149671795 + (TG)n Simple_repeat Simple_repeat 1 46 0 6 660 780 107 0 0 chr3 9929474 9929595 -149670188 + (GGAA)n Simple_repeat Simple_repeat 1 121 0 6 660 223 329 85 26 chr3 9930450 9930603 -149669180 + MIRc SINE MIR 46 207 -61 6 660 701 304 148 49 chr3 9931613 9931937 -149667846 + MLT1E3 LTR MaLR 62 416 -208 6 660 329 262 180 0 chr3 9931937 9932059 -149667724 - B1F SINE Alu -5 144 1 6 660 701 304 148 49 chr3 9932059 9932246 -149667537 + MLT1E3 LTR MaLR 417 624 0 6 660 3631 104 28 19 chr3 9932754 9933295 -149666488 + Lx3C LINE L1 4564 5109 -777 6 660 7526 72 13 16 chr3 9933299 9934318 -149665465 + L1_Mus3 LINE L1 5616 6631 -7 6 660 9425 103 26 9 chr3 9934314 9936162 -149663621 + Lx3C LINE L1 5095 6974 -2 6 660 245 266 15 15 chr3 9936504 9936569 -149663214 + ID4_ SINE ID 3 67 -16 6 660 360 0 0 0 chr3 9936571 9936611 -149663172 + (TC)n Simple_repeat Simple_repeat 2 41 0 6 660 212 158 13 38 chr3 9936626 9936705 -149663078 + (CA)n Simple_repeat Simple_repeat 1 77 0 6 660 252 219 20 30 chr3 9936724 9936823 -149662960 + (CA)n Simple_repeat Simple_repeat 1 98 0 6 660 324 0 0 0 chr3 9936885 9936921 -149662862 + (CA)n Simple_repeat Simple_repeat 1 36 0 6 660 660 26 0 0 chr3 9938924 9939002 -149660781 + (TC)n Simple_repeat Simple_repeat 2 79 0 6 660 1377 167 43 43 chr3 9939275 9939575 -149660208 - Lx5 LINE L1 0 7050 6751 6 660 287 301 126 15 chr3 9939593 9939728 -149660055 - B4 SINE B4 -142 150 1 6 660 370 326 73 26 chr3 9940352 9940544 -149659239 + RMER15 LTR ERVL 324 524 -51 6 660 891 94 0 0 chr3 9940711 9940838 -149658945 + (TTCCC)n Simple_repeat Simple_repeat 5 131 0 6 660 969 111 12 6 chr3 9940839 9941003 -149658780 + (TTTC)n Simple_repeat Simple_repeat 1 165 0 6 660 561 147 71 35 chr3 9941005 9941118 -149658665 - B1_Mus2 SINE Alu -12 135 19 6 660 525 260 26 64 chr3 9941467 9941701 -149658082 - MLT1A1 LTR MaLR -2 406 182 6 660 420 267 25 17 chr3 9941940 9942058 -149657725 - PB1D7 SINE Alu -1 119 1 6 660 342 326 140 67 chr3 9942848 9943311 -149656472 + L2 LINE L2 2519 3015 -404 6 660 462 188 0 0 chr3 9944066 9944162 -149655621 + (TG)n Simple_repeat Simple_repeat 2 97 0 6 660 242 218 206 60 chr3 9944182 9944351 -149655432 + MLT1D LTR MaLR 213 433 -72 6 660 792 167 0 0 chr3 9944355 9944523 -149655260 + GA-rich Low_complexity Low_complexity 1 168 0 7 660 378 0 0 0 chr3 9945294 9945336 -149654447 + (TG)n Simple_repeat Simple_repeat 2 43 0 7 660 514 333 17 97 chr3 9945339 9945638 -149654145 - B4A SINE B4 -4 288 14 7 660 325 319 71 25 chr3 9945651 9945847 -149653936 - Tigger5 DNA MER2_type -2194 212 8 7 660 1682 200 82 8 chr3 9946870 9947248 -149652535 - MTD LTR MaLR -11 408 3 7 660 21 0 0 0 chr3 9948133 9948154 -149651629 + AT_rich Low_complexity Low_complexity 1 21 0 7 660 222 281 16 0 chr3 9948706 9948770 -149651013 - PB1D10 SINE Alu -7 110 46 7 660 378 0 0 0 chr3 9948843 9948885 -149650898 + (TAA)n Simple_repeat Simple_repeat 3 44 0 7 660 1007 144 0 11 chr3 9949645 9949827 -149649956 + CT-rich Low_complexity Low_complexity 1 180 0 7 660 519 236 9 0 chr3 9949838 9949948 -149649835 - PB1D7 SINE Alu -1 119 9 7 660 37233 35 15 10 chr3 9949967 9955846 -149643937 - L1Md_T LINE L1 0 6585 580 7 660 4091 81 4 0 chr3 9956022 9956566 -149643217 - L1_Mus3 LINE L1 0 6638 6093 7 660 3984 129 27 11 chr3 9956569 9957196 -149642587 + L1_Mm LINE L1 4595 5231 -652 7 660 513 141 0 0 chr3 9957330 9957415 -149642368 + (GGGA)n Simple_repeat Simple_repeat 1 85 0 7 660 605 266 92 31 chr3 9957744 9957973 -149641810 + MTEa LTR MaLR 20 262 -117 7 660 1068 205 196 31 chr3 9958254 9958478 -149641305 - MTD LTR MaLR 0 419 155 7 660 549 0 0 0 chr3 9958478 9958539 -149641244 + (CA)n Simple_repeat Simple_repeat 1 61 0 7 660 1068 205 196 31 chr3 9958539 9958672 -149641111 - MTD LTR MaLR -265 154 3 7 660 338 294 26 35 chr3 9959611 9959724 -149640059 + B1F SINE Alu 5 116 -33 7 660 786 205 0 0 chr3 9959759 9960072 -149639711 + (CA)n Simple_repeat Simple_repeat 1 313 0 7 660 395 213 95 32 chr3 9960642 9960768 -149639015 + B1_Mur3 SINE Alu 16 149 0 7 660 216 0 0 0 chr3 9961238 9961262 -149638521 + (TC)n Simple_repeat Simple_repeat 2 25 0 7 82 39201 32 12 6 chr3 9961262 9967595 -149632188 - L1Md_T LINE L1 0 6582 214 7 661 1206 180 151 20 chr3 9967661 9968013 -149631770 - RMER17C LTR ERVK -2 408 11 7 661 1023 159 163 0 chr3 9969199 9969451 -149630332 - Lx9 LINE L1 0 7644 7352 7 661 26 0 0 0 chr3 9969751 9969777 -149630006 + AT_rich Low_complexity Low_complexity 1 26 0 7 661 899 222 118 24 chr3 9970004 9970258 -149629525 + B4A SINE B4 5 282 -10 7 661 281 349 37 0 chr3 9970294 9970403 -149629380 - PB1D10 SINE Alu -4 113 1 7 661 854 164 64 73 chr3 9971996 9972325 -149627458 - RMER17C LTR ERVK 0 410 85 7 661 592 227 4 100 chr3 9972339 9972618 -149627165 - RMER17C LTR ERVK -158 252 1 7 661 1910 142 15 25 chr3 9972618 9973010 -149626773 - RMER17C-int LTR ERVK 0 3238 2905 7 661 1118 148 170 37 chr3 9972997 9973602 -149626181 - RMER17C-int LTR ERVK -228 3010 2532 7 661 918 177 21 0 chr3 9973590 9973776 -149626007 - RMER17C-int LTR ERVK -879 2359 2170 7 661 1141 177 189 22 chr3 9973775 9974231 -149625552 - RMER17C-int LTR ERVK -1222 2016 1485 7 661 198 167 0 0 chr3 9974765 9974801 -149624982 + GA-rich Low_complexity Low_complexity 2 37 0 7 661 1634 199 129 34 chr3 9975030 9975478 -149624305 - RMER17C-int LTR ERVK -2746 492 2 7 661 5533 118 17 39 chr3 9975506 9976054 -149623729 + L1VL1 LINE L1 437 994 -5644 7 661 3355 41 5 0 chr3 9976054 9976448 -149623335 - MTA_Mm LTR MaLR 0 396 1 7 661 8435 67 7 4 chr3 9976448 9977542 -149622241 - MTA_Mm-int LTR MaLR 0 1098 1 7 661 3376 36 8 0 chr3 9977542 9977935 -149621848 - MTA_Mm LTR MaLR 0 396 1 7 661 28931 111 7 3 chr3 9977935 9982457 -149617326 + L1VL1 LINE L1 995 5512 -371 7 661 1265 236 109 25 chr3 9982457 9982893 -149616890 + RLTR20B3 LTR ERVK 100 553 -7 7 661 218 32 0 31 chr3 9982893 9982925 -149616858 + (TG)n Simple_repeat Simple_repeat 2 32 0 7 661 587 242 5 129 chr3 9982954 9983163 -149616620 - B3A SINE B2 -15 183 1 7 661 192 311 183 19 chr3 9983788 9984001 -149615782 - L2 LINE L2 -351 3068 2821 7 661 233 197 119 90 chr3 9984765 9984832 -149614951 + ID4_ SINE ID 2 70 -13 7 661 237 245 0 0 chr3 9985546 9985595 -149614188 + (CATATA)n Simple_repeat Simple_repeat 3 51 0 7 661 687 95 0 0 chr3 9985605 9985710 -149614073 + (TC)n Simple_repeat Simple_repeat 2 106 0 7 661 190 175 45 60 chr3 9986775 9986842 -149612941 + L2a LINE L2 3278 3343 -83 7 661 2120 124 76 36 chr3 9986910 9987303 -149612480 - RLTR9E LTR ERVK 0 409 1 7 661 329 174 14 0 chr3 9987785 9987854 -149611929 + CT-rich Low_complexity Low_complexity 4 73 0 7 661 9040 12 0 0 chr3 9988549 9989545 -149610238 - L1Md_A LINE L1 0 6582 5587 7 661 41716 12 4 6 chr3 9989572 9995967 -149603816 - L1Md_A LINE L1 0 6582 205 7 661 579 218 29 24 chr3 9996062 9996211 -149603572 - B1_Mur1 SINE Alu -1 148 3 7 661 509 136 10 0 chr3 9996225 9996328 -149603455 + (CA)n Simple_repeat Simple_repeat 1 104 0 7 661 446 259 91 6 chr3 9996680 9996855 -149602928 + Lx9 LINE L1 7283 7472 -172 7 661 662 87 10 0 chr3 9996855 9996958 -149602825 + (CA)n Simple_repeat Simple_repeat 2 105 0 7 661 3772 97 39 6 chr3 9997017 9997555 -149602228 + Lx LINE L1 6097 6652 -2 7 661 10943 103 4 17 chr3 9997556 10000000 -149599783 + L1VL1 LINE L1 409 2819 -3064 7 661 17689 99 39 19 chr3 10000000 10002713 -149597070 + L1Md_F2 LINE L1 2820 5586 -297 1 661 7533 63 27 11 chr3 10002714 10003693 -149596090 + L1Md_F2 LINE L1 5588 6581 -1 1 661 218 0 94 0 chr3 10003735 10003767 -149596016 + (CAAAA)n Simple_repeat Simple_repeat 1 35 0 2 661 7478 96 4 1 chr3 10003767 10005340 -149594443 + L1_Mus2 LINE L1 4988 6565 -1 3 661 816 65 0 0 chr3 10005365 10005472 -149594311 + (GAAA)n Simple_repeat Simple_repeat 1 107 0 4 661 302 299 76 8 chr3 10006057 10006175 -149593608 - B1F1 SINE Alu -8 141 16 5 661 414 0 0 0 chr3 10006775 10006821 -149592962 + (TG)n Simple_repeat Simple_repeat 2 47 0 6 661 297 0 0 0 chr3 10007946 10007979 -149591804 + (CAGA)n Simple_repeat Simple_repeat 2 34 0 7 661 270 261 176 8 chr3 10007983 10008114 -149591669 - MER2 DNA MER2_type -55 290 138 8 661 342 264 32 16 chr3 10008115 10008238 -149591545 + Lx8 LINE L1 5795 5919 -1554 9 661 262 304 101 39 chr3 10008693 10008871 -149590912 - MER2 DNA MER2_type -153 192 4 8 661 296 336 18 0 chr3 10008998 10009111 -149590672 + MER5A1 DNA MER1_type 1 115 -51 1 661 450 0 0 0 chr3 10009292 10009342 -149590441 + (TC)n Simple_repeat Simple_repeat 1 50 0 1 661 250 241 17 0 chr3 10010288 10010346 -149589437 + (CA)n Simple_repeat Simple_repeat 2 60 0 1 661 225 65 0 0 chr3 10011047 10011078 -149588705 + (TG)n Simple_repeat Simple_repeat 2 32 0 1 661 471 297 42 6 chr3 10011331 10011497 -149588286 - Tigger5 DNA MER2_type -83 2323 2152 1 661 296 221 124 9 chr3 10011520 10011625 -149588158 + ID_B1 SINE B4 85 201 -23 1 661 273 89 0 0 chr3 10014466 10014511 -149585272 + (T)n Simple_repeat Simple_repeat 1 45 0 1 661 415 241 18 36 chr3 10014518 10014630 -149585153 - PB1D10 SINE Alu -2 115 6 1 661 213 350 12 36 chr3 10014571 10014654 -149585129 - B4A SINE B4 -146 146 66 1 661 180 0 0 0 chr3 10014872 10014892 -149584891 + (TGAG)n Simple_repeat Simple_repeat 4 23 0 1 661 290 262 119 0 chr3 10017190 10017274 -149582509 + PB1D10 SINE Alu 22 115 -2 2 661 495 98 0 24 chr3 10017278 10017362 -149582421 + L1_Mus2 LINE L1 6485 6566 0 2 661 23 33 0 0 chr3 10017362 10017392 -149582391 + AT_rich Low_complexity Low_complexity 1 30 0 2 661 207 176 0 0 chr3 10017398 10017432 -149582351 + GA-rich Low_complexity Low_complexity 2 35 0 2 661 195 297 120 38 chr3 10018397 10018530 -149581253 + MIRc SINE MIR 43 186 -82 2 661 186 400 88 0 chr3 10018829 10018999 -149580784 + L2 LINE L2 2480 2664 -755 2 661 504 315 132 8 chr3 10019189 10019432 -149580351 + B4A SINE B4 2 274 -18 2 661 408 40 0 0 chr3 10019497 10019547 -149580236 + (CA)n Simple_repeat Simple_repeat 2 51 0 2 661 758 285 52 66 chr3 10019557 10019846 -149579937 + B4A SINE B4 2 286 -6 2 661 293 240 225 0 chr3 10020224 10020353 -149579430 - Tigger5 DNA MER2_type -2176 230 73 1 661 238 247 33 76 chr3 10021588 10021680 -149578103 - L1MA9 LINE L1 -330 5982 5895 2 661 710 131 31 10 chr3 10021830 10022124 -149577659 + (CA)n Simple_repeat Simple_repeat 1 299 0 3 661 186 296 102 0 chr3 10023038 10023136 -149576647 - L2c LINE L2 -189 3198 3091 3 661 216 300 0 14 chr3 10023224 10023295 -149576488 + G-rich Low_complexity Low_complexity 3 72 0 3 661 336 48 0 0 chr3 10023493 10023535 -149576248 + (CAAAA)n Simple_repeat Simple_repeat 3 44 0 3 661 203 363 0 0 chr3 10024186 10024354 -149575429 + (TA)n Simple_repeat Simple_repeat 1 168 0 3 661 203 363 0 0 chr3 10024442 10024610 -149575173 + (TA)n Simple_repeat Simple_repeat 1 168 0 3 661 1176 293 79 26 chr3 10026547 10027128 -149572655 - L1MA6 LINE L1 -279 6021 5410 3 661 226 310 10 0 chr3 10027160 10027260 -149572523 - L1_Mur3 LINE L1 -734 5146 5046 3 661 423 248 29 0 chr3 10027268 10027373 -149572410 + PB1D10 SINE Alu 10 117 0 3 661 665 277 21 48 chr3 10027379 10027565 -149572218 + B3A SINE B2 2 182 -16 3 661 552 269 12 18 chr3 10027609 10027772 -149572011 + Lx9 LINE L1 7299 7460 -184 4 661 244 120 20 20 chr3 10027772 10027823 -149571960 + CT-rich Low_complexity Low_complexity 4 54 0 4 661 26 30 0 0 chr3 10027904 10027937 -149571846 + AT_rich Low_complexity Low_complexity 1 33 0 4 661 1353 280 96 40 chr3 10028015 10028617 -149571166 - L1MA6 LINE L1 -1104 5039 4404 3 661 261 196 73 42 chr3 10028624 10028720 -149571063 - ORR1E LTR MaLR 0 379 281 4 661 222 37 0 0 chr3 10028775 10028802 -149570981 + (TTTG)n Simple_repeat Simple_repeat 3 29 0 4 661 393 241 86 70 chr3 10028857 10029044 -149570739 - ORR1E LTR MaLR -169 190 1 4 661 2434 285 65 35 chr3 10029093 10030034 -149569749 - Lx8 LINE L1 -4 7469 6501 4 661 404 122 57 0 chr3 10030083 10030206 -149569577 + CT-rich Low_complexity Low_complexity 1 130 0 4 661 1568 229 134 40 chr3 10030216 10031121 -149568662 - Lx8 LINE L1 -1637 4243 3675 4 661 237 301 22 7 chr3 10031150 10031287 -149568496 - Lx8 LINE L1 -2502 3378 3240 4 661 2298 127 6 9 chr3 10031394 10031744 -149568039 - Lx4A LINE L1 0 7058 6710 4 661 452 223 50 7 chr3 10031873 10032013 -149567770 - L1MA6 LINE L1 -2869 3274 3129 3 661 403 127 0 16 chr3 10032059 10032123 -149567660 - Lx3B LINE L1 -117 6856 6794 4 661 452 202 167 0 chr3 10032251 10032319 -149567464 - Lx7 LINE L1 -948 6748 6662 4 661 184 30 0 57 chr3 10032319 10032354 -149567429 + (GTATG)n Simple_repeat Simple_repeat 2 34 0 5 661 452 202 167 0 chr3 10032354 10032399 -149567384 - Lx7 LINE L1 -1035 6661 6617 4 661 1256 220 54 27 chr3 10032406 10032779 -149567004 - RLTR16 LTR ERVK -122 383 1 5 661 369 0 0 0 chr3 10032791 10032832 -149566951 + (TG)n Simple_repeat Simple_repeat 1 41 0 5 661 1945 155 83 22 chr3 10032833 10033241 -149566542 - L1_Mur3 LINE L1 -6477 1235 803 5 661 315 299 21 15 chr3 10033584 10033738 -149566045 - L1M2 LINE L1 -3602 2947 2772 5 661 22 0 0 0 chr3 10033931 10033953 -149565830 + AT_rich Low_complexity Low_complexity 1 22 0 5 661 927 130 13 11 chr3 10034008 10034548 -149565235 + (TG)n Simple_repeat Simple_repeat 1 541 0 5 661 445 273 78 6 chr3 10034570 10034736 -149565047 - B3A SINE B2 -16 182 5 5 661 321 308 92 48 chr3 10034897 10035211 -149564572 - L1M2 LINE L1 -4079 2503 2149 5 661 279 0 0 0 chr3 10036041 10036072 -149563711 + (TCTG)n Simple_repeat Simple_repeat 2 32 0 5 661 520 267 43 104 chr3 10036424 10036654 -149563129 + MTE2b LTR MaLR 1 216 -163 5 661 5293 124 45 13 chr3 10036655 10037520 -149562263 - Lx LINE L1 -1 6653 5761 6 661 7465 50 34 12 chr3 10037520 10038457 -149561326 - L1Md_F2 LINE L1 -38 6544 5587 6 661 5566 133 116 8 chr3 10038451 10039432 -149560351 - L1_Mur1 LINE L1 -2586 3300 2214 6 661 236 227 204 0 chr3 10039734 10039822 -149559961 - MER46C DNA MER2_type -86 252 147 6 661 24 0 0 0 chr3 10039855 10039879 -149559904 + AT_rich Low_complexity Low_complexity 1 24 0 6 661 328 227 0 10 chr3 10040119 10040217 -149559566 - L1MA8 LINE L1 -18 6273 6177 6 661 260 263 109 20 chr3 10040959 10041060 -149558723 + LTR16A1 LTR ERVL 327 436 -20 6 661 861 179 10 45 chr3 10041629 10041667 -149558116 - RMER16 LTR ERVK 0 533 500 6 661 3152 41 51 0 chr3 10041667 10042058 -149557725 + RLTR10A LTR ERVK 1 411 0 6 661 861 179 10 45 chr3 10042058 10042218 -149557565 - RMER16 LTR ERVK -34 499 342 6 661 668 242 106 9 chr3 10043751 10043968 -149555815 + RMER15 LTR ERVL 338 575 0 6 661 29863 58 2 0 chr3 10045194 10048959 -149550824 + L1Md_F2 LINE L1 1814 5586 -297 7 661 8190 50 0 4 chr3 10048959 10049958 -149549825 + L1Md_F2 LINE L1 5587 6581 -1 7 661 234 0 0 0 chr3 10050347 10050373 -149549410 + (TC)n Simple_repeat Simple_repeat 1 26 0 7 661 273 297 11 11 chr3 10050601 10050693 -149549090 + (TATG)n Simple_repeat Simple_repeat 1 92 0 7 661 235 191 14 14 chr3 10050701 10050770 -149549013 + (TATATG)n Simple_repeat Simple_repeat 6 74 0 7 661 639 315 37 78 chr3 10050772 10051068 -149548715 - B4A SINE B4 0 292 9 7 661 1008 0 0 0 chr3 10051348 10051460 -149548323 + (TTCCC)n Simple_repeat Simple_repeat 4 115 0 7 661 690 203 15 0 chr3 10051460 10051593 -149548190 - B1_Mur1 SINE Alu -9 140 6 7 661 306 259 17 77 chr3 10051491 10051608 -149548175 - MT2B LTR ERVL -338 263 154 7 661 366 23 0 0 chr3 10052586 10052629 -149547154 + (TG)n Simple_repeat Simple_repeat 2 44 0 7 661 342 0 0 0 chr3 10054313 10054351 -149545432 + (TG)n Simple_repeat Simple_repeat 1 38 0 7 661 443 263 6 103 chr3 10055706 10055880 -149543903 + RMER10A LTR ERVL 22 178 -264 8 661 816 210 91 14 chr3 10055903 10056111 -149543672 - URR1A DNA MER1_type 0 226 3 8 661 375 294 94 5 chr3 10056113 10056315 -149543468 + RMER10A LTR ERVL 198 417 -25 8 661 750 179 7 28 chr3 10056459 10056603 -149543180 + B1_Mus1 SINE Alu 3 143 -5 8 661 68 72 0 0 chr3 10056612 10056750 -149543033 + AT_rich Low_complexity Low_complexity 1 138 0 8 661 21 0 0 0 chr3 10056858 10056879 -149542904 + AT_rich Low_complexity Low_complexity 1 21 0 8 661 243 0 0 0 chr3 10056881 10056908 -149542875 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 8 661 282 288 198 0 chr3 10057053 10057164 -149542619 + RSINE1 SINE B4 1 133 -32 8 661 2752 49 6 3 chr3 10057243 10057593 -149542190 - L1Md_F2 LINE L1 -6 6576 6226 8 661 655 181 238 43 chr3 10059923 10060096 -149539687 - Lx6 LINE L1 -500 6960 6752 8 661 378 91 0 0 chr3 10060096 10060151 -149539632 + (TTA)n Simple_repeat Simple_repeat 1 55 0 8 661 655 181 238 43 chr3 10060151 10060208 -149539575 - Lx6 LINE L1 -709 6751 6687 8 661 742 219 4 187 chr3 10060208 10060433 -149539350 + Lx6 LINE L1 6979 7162 -298 9 661 4031 99 14 3 chr3 10060433 10061008 -149538775 - L1Md_A LINE L1 -5810 914 334 9 661 6579 45 39 0 chr3 10061009 10061806 -149537977 + L1Md_T LINE L1 5755 6582 0 9 661 813 225 166 33 chr3 10061811 10062082 -149537701 + Lx6 LINE L1 7154 7460 0 9 661 313 68 68 14 chr3 10062188 10062262 -149537521 + (CAAAA)n Simple_repeat Simple_repeat 3 80 0 9 661 216 0 0 0 chr3 10064621 10064645 -149535138 + (CA)n Simple_repeat Simple_repeat 1 24 0 9 661 270 0 0 0 chr3 10064645 10064674 -149535109 + (TA)n Simple_repeat Simple_repeat 2 31 0 9 661 944 246 157 48 chr3 10064802 10065216 -149534567 - RLTR17 LTR ERVK -122 570 112 9 661 465 34 0 0 chr3 10065328 10065387 -149534396 + (TC)n Simple_repeat Simple_repeat 2 60 0 9 661 186 71 0 0 chr3 10065405 10065433 -149534350 + (TTTAA)n Simple_repeat Simple_repeat 3 30 0 9 661 5929 115 63 8 chr3 10065433 10066334 -149533449 - Lx4A LINE L1 -4 7054 6104 9 661 1794 166 11 79 chr3 10066524 10066904 -149532879 + ORR1B1 LTR MaLR 41 394 0 1 661 1039 259 83 11 chr3 10071049 10071404 -149528379 - MTD LTR MaLR -5 374 27 1 661 180 0 0 0 chr3 10071404 10071424 -149528359 + (CAAA)n Simple_repeat Simple_repeat 3 22 0 1 661 547 256 84 96 chr3 10072080 10072287 -149527496 - B4A SINE B4 -44 248 37 1 661 3464 28 5 0 chr3 10072287 10072681 -149527102 - MTA_Mm LTR MaLR 0 396 1 1 661 8337 59 16 3 chr3 10072682 10073765 -149526018 - MTA_Mm-int LTR MaLR -1 1097 1 1 661 3580 23 0 0 chr3 10073765 10074161 -149525622 - MTA_Mm LTR MaLR 0 396 1 1 661 547 256 84 96 chr3 10074161 10074201 -149525582 - B4A SINE B4 -256 36 2 1 661 263 275 87 11 chr3 10074202 10074294 -149525489 - PB1D10 SINE Alu -12 105 7 1 661 310 238 0 35 chr3 10074622 10074709 -149525074 + PB1D10 SINE Alu 33 116 -1 1 661 198 103 0 0 chr3 10074710 10074739 -149525044 + (CAAG)n Simple_repeat Simple_repeat 2 30 0 1 661 493 321 88 0 chr3 10074818 10075011 -149524772 + B4A SINE B4 7 216 -76 1 661 206 294 0 0 chr3 10075033 10075084 -149524699 + (CA)n Simple_repeat Simple_repeat 1 51 0 1 661 570 248 83 19 chr3 10075102 10075258 -149524525 + B4 SINE B4 17 182 -110 1 661 243 0 0 0 chr3 10075325 10075352 -149524431 + (CA)n Simple_repeat Simple_repeat 1 27 0 1 661 427 281 246 69 chr3 10075889 10076228 -149523555 + MER57C2 LTR ERV1 7 405 -29 1 661 3341 43 5 2 chr3 10076245 10076640 -149523143 + MTA_Mm LTR MaLR 1 396 0 1 661 593 232 133 17 chr3 10077101 10077281 -149522502 - B3 SINE B2 -11 205 5 1 661 473 162 30 0 chr3 10077790 10077889 -149521894 + GA-rich Low_complexity Low_complexity 5 106 0 1 661 649 285 123 42 chr3 10078010 10078342 -149521441 - MLT1C LTR MaLR -81 386 38 1 661 8237 71 6 2 chr3 10079274 10080968 -149518815 + L1_Mus1 LINE L1 4865 6567 0 1 661 213 121 0 0 chr3 10081028 10081061 -149518722 + (A)n Simple_repeat Simple_repeat 1 33 0 1 661 531 0 0 0 chr3 10081760 10081819 -149517964 + (TG)n Simple_repeat Simple_repeat 1 59 0 1 661 621 0 0 0 chr3 10082369 10082438 -149517345 + (CTCTG)n Simple_repeat Simple_repeat 5 73 0 1 661 409 208 10 59 chr3 10082967 10083069 -149516714 - PB1D10 SINE Alu 0 117 21 1 661 744 104 0 0 chr3 10083658 10083792 -149515991 + (TC)n Simple_repeat Simple_repeat 1 134 0 1 661 552 235 72 22 chr3 10083815 10083954 -149515829 + B3A SINE B2 9 154 -44 1 661 438 108 0 0 chr3 10083955 10084020 -149515763 + (CA)n Simple_repeat Simple_repeat 2 66 0 1 661 252 296 37 12 chr3 10084993 10085075 -149514708 + PB1D10 SINE Alu 7 90 -27 1 661 455 17 34 0 chr3 10085111 10085170 -149514613 + (CAAAC)n Simple_repeat Simple_repeat 5 65 0 1 661 309 51 0 0 chr3 10085170 10085208 -149514575 + (CCAA)n Simple_repeat Simple_repeat 1 39 0 1 661 600 218 194 6 chr3 10085581 10085756 -149514027 + RMER1C Other Other 32 239 -1103 1 661 452 270 66 18 chr3 10085854 10086020 -149513763 - RMER20A LTR ERVK 0 516 343 1 661 672 70 50 0 chr3 10086028 10086128 -149513655 - B1_Mm SINE Alu 0 147 43 1 661 1091 239 63 3 chr3 10086136 10086421 -149513362 - RMER20A LTR ERVK -192 324 23 1 661 2333 253 75 51 chr3 10086613 10087187 -149512596 + RMER1C Other Other 411 984 -358 1 661 183 42 0 0 chr3 10087187 10087211 -149512572 + (CA)n Simple_repeat Simple_repeat 1 24 0 1 661 2333 253 75 51 chr3 10087211 10087401 -149512382 + RMER1C Other Other 985 1192 -150 1 661 925 41 0 0 chr3 10087919 10088042 -149511741 + B1_Mus1 SINE Alu 26 148 0 1 661 216 0 0 0 chr3 10090205 10090229 -149509554 + (A)n Simple_repeat Simple_repeat 1 24 0 1 661 1036 172 30 0 chr3 10090651 10090854 -149508929 + URR1B DNA MER1_type 17 225 0 1 661 208 148 20 102 chr3 10091334 10091432 -149508351 + (TTAAA)n Simple_repeat Simple_repeat 1 90 0 1 661 448 273 157 8 chr3 10092241 10092455 -149507328 + MTEb LTR MaLR 92 371 -8 1 662 681 286 123 8 chr3 10092969 10093230 -149506553 - B4A SINE B4 0 292 2 1 662 852 272 211 13 chr3 10093428 10094069 -149505714 - L1MB7 LINE L1 -212 5972 5193 1 662 3936 96 30 2 chr3 10095966 10096534 -149503249 - Lx5 LINE L1 -1251 5799 5213 1 662 311 324 10 19 chr3 10096534 10096638 -149503145 - PB1D10 SINE Alu -10 107 5 1 662 252 0 0 0 chr3 10097277 10097305 -149502478 + (A)n Simple_repeat Simple_repeat 1 28 0 1 662 759 251 5 42 chr3 10097374 10097586 -149502197 + RMER13A LTR ERVK 94 297 -563 1 662 342 284 14 36 chr3 10097644 10097783 -149502000 + RMER13A LTR ERVK 507 642 -218 1 662 204 158 0 0 chr3 10098252 10098290 -149501493 + (TA)n Simple_repeat Simple_repeat 2 39 0 1 662 542 298 11 40 chr3 10098503 10098678 -149501105 - B4 SINE B4 -14 278 109 1 662 22 0 0 0 chr3 10098699 10098721 -149501062 + AT_rich Low_complexity Low_complexity 1 22 0 1 662 627 252 22 0 chr3 10098935 10099074 -149500709 + B1_Mur1 SINE Alu 2 143 -6 1 662 324 267 0 22 chr3 10100121 10100213 -149499570 + CT-rich Low_complexity Low_complexity 2 91 0 1 662 1012 227 15 41 chr3 10100268 10100539 -149499244 - RMER1C Other Other -1 1341 1078 1 662 39 68 0 0 chr3 10100549 10100623 -149499160 + AT_rich Low_complexity Low_complexity 1 74 0 1 662 1465 122 0 9 chr3 10100749 10100973 -149498810 - Lx2 LINE L1 -1 6996 6775 1 662 984 114 7 0 chr3 10101007 10101156 -149498627 - B2_Mm1t SINE B2 -42 151 2 1 662 777 91 8 8 chr3 10101157 10101279 -149498504 - L1_Mur2 LINE L1 -579 5298 5177 1 662 1764 173 91 11 chr3 10101534 10101884 -149497899 + ORR1C1 LTR MaLR 1 378 0 1 662 1494 77 0 0 chr3 10102175 10102472 -149497311 + (TTTC)n Simple_repeat Simple_repeat 1 297 0 1 662 586 256 175 33 chr3 10102475 10102807 -149496976 - L1MA8 LINE L1 -130 6161 5783 1 662 707 258 109 41 chr3 10102830 10103350 -149496433 - L1MA8 LINE L1 -570 5730 5166 1 662 396 0 0 0 chr3 10103406 10103450 -149496333 + (TG)n Simple_repeat Simple_repeat 1 44 0 1 662 335 281 206 6 chr3 10103779 10103944 -149495839 - B3 SINE B2 0 216 19 1 662 21 36 0 0 chr3 10103992 10104020 -149495763 + AT_rich Low_complexity Low_complexity 1 28 0 1 662 1061 131 40 10 chr3 10105354 10105554 -149494229 + ORR1A2-int LTR MaLR 838 1043 -920 1 662 1431 74 32 0 chr3 10105554 10105744 -149494039 - L1_Mus3 LINE L1 -661 5977 5782 1 662 508 133 0 0 chr3 10105740 10105815 -149493968 - L1_Mur1 LINE L1 -735 5151 5077 1 662 4367 90 13 3 chr3 10105814 10106414 -149493369 + L1_Mus3 LINE L1 6013 6618 -20 1 662 5765 97 21 7 chr3 10106434 10107324 -149492459 + ORR1A2-int LTR MaLR 1061 1963 0 1 662 2070 135 3 58 chr3 10107324 10107670 -149492113 + ORR1A2 LTR MaLR 1 327 0 1 662 263 235 78 56 chr3 10107761 10107851 -149491932 - B4 SINE B4 -196 96 5 1 662 431 288 131 39 chr3 10108327 10108587 -149491196 - RMER20B LTR ERVK -212 415 132 1 662 2981 86 5 0 chr3 10108690 10109085 -149490698 + MTB LTR MaLR 4 400 0 1 662 357 178 42 8 chr3 10109381 10109500 -149490283 + GA-rich Low_complexity Low_complexity 1 123 0 1 662 1013 248 123 9 chr3 10109949 10110283 -149489500 - MTD LTR MaLR 0 419 48 1 662 7244 163 38 27 chr3 10110650 10111967 -149487816 + Lx3C LINE L1 5662 6974 -2 1 662 21 36 0 0 chr3 10111967 10111995 -149487788 + AT_rich Low_complexity Low_complexity 1 28 0 1 662 489 271 15 23 chr3 10112230 10112362 -149487421 + ID_B1 SINE B4 86 216 -8 1 662 221 279 88 0 chr3 10113005 10113073 -149486710 - MER5A DNA MER1_type -113 76 3 1 662 186 103 0 0 chr3 10113268 10113297 -149486486 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 1 662 568 127 54 9 chr3 10113341 10113452 -149486331 + MT2C_Mm LTR ERVL 284 399 -76 1 662 15516 84 27 8 chr3 10113571 10116434 -149483349 + L1VL4 LINE L1 206 3126 -433 1 662 936 115 0 45 chr3 10116434 10116520 -149483263 + B1_Mus1 SINE Alu 1 84 -64 1 662 2703 80 80 3 chr3 10116520 10116896 -149482887 + RLTR44A LTR ERVK 1 405 0 1 662 936 115 0 45 chr3 10116896 10116964 -149482819 + B1_Mus1 SINE Alu 85 148 0 1 662 3265 68 25 30 chr3 10116964 10117435 -149482348 + MusHAL1 LINE L1 2244 2712 0 1 662 1189 69 0 0 chr3 10117440 10117585 -149482198 + B1_Mus2 SINE Alu 3 147 0 1 662 1158 309 61 59 chr3 10117693 10118232 -149481551 + Lx7 LINE L1 6921 7471 -2 1 662 1662 65 0 4 chr3 10118307 10118537 -149481246 - RLTR1C LTR ERV1 0 503 275 1 662 1781 171 112 67 chr3 10118531 10118996 -149480787 + RLTR24 LTR ERV1 44 529 0 1 662 353 286 130 109 chr3 10119403 10119587 -149480196 - B3 SINE B2 -4 212 7 1 662 294 29 0 0 chr3 10119774 10119809 -149479974 + (TG)n Simple_repeat Simple_repeat 1 35 0 1 662 451 254 9 0 chr3 10119811 10119921 -149479862 - B3A SINE B2 -56 142 32 1 662 330 26 0 0 chr3 10119946 10119985 -149479798 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 662 1361 65 0 21 chr3 10120247 10120436 -149479347 + L1Md_F2 LINE L1 6392 6576 -6 1 662 1169 74 0 0 chr3 10120439 10120587 -149479196 + B1_Mus1 SINE Alu 1 148 0 1 662 2389 244 80 30 chr3 10120607 10121430 -149478353 - RCHARR1 DNA MER1_type -79 895 32 1 662 278 194 44 15 chr3 10121588 10121656 -149478127 - ID2 SINE ID -11 72 3 1 662 515 196 21 7 chr3 10122619 10122763 -149477020 + GA-rich Low_complexity Low_complexity 3 148 0 1 662 6184 30 29 1 chr3 10122792 10123527 -149476256 + L1Md_F3 LINE L1 5829 6583 -1 1 662 3224 271 66 93 chr3 10123915 10125222 -149474561 + RMER1C Other Other 70 1341 -1 1 662 663 224 85 9 chr3 10125544 10125756 -149474027 + L1MA8 LINE L1 5777 6004 -287 1 662 519 277 15 15 chr3 10128026 10128158 -149471625 + RSINE1 SINE B4 12 143 -22 1 662 802 148 59 0 chr3 10128315 10128450 -149471333 + B1_Mus1 SINE Alu 1 143 -5 1 662 708 197 21 7 chr3 10130021 10130164 -149469619 + B1_Mur1 SINE Alu 5 149 0 1 662 3960 180 55 34 chr3 10132728 10133613 -149466170 + RMER13B LTR ERVK 1 904 -4 1 662 237 311 70 55 chr3 10133632 10133833 -149465950 - MTE-int LTR MaLR -817 763 560 1 662 228 386 21 0 chr3 10133901 10134046 -149465737 - L1M5 LINE L1 -438 5735 5588 1 662 285 29 0 0 chr3 10134084 10134118 -149465665 + (T)n Simple_repeat Simple_repeat 1 34 0 2 662 1059 103 7 0 chr3 10134118 10134264 -149465519 - B1_Mus1 SINE Alu 0 148 2 2 662 615 152 0 0 chr3 10134321 10134433 -149465350 + CT-rich Low_complexity Low_complexity 3 114 0 2 662 21 0 0 0 chr3 10134964 10134985 -149464798 + AT_rich Low_complexity Low_complexity 1 21 0 2 662 350 287 38 15 chr3 10135876 10136007 -149463776 + ID_B1 SINE B4 84 217 -7 2 662 462 114 0 0 chr3 10136154 10136224 -149463559 + (CA)n Simple_repeat Simple_repeat 1 70 0 2 662 402 216 17 0 chr3 10136536 10136712 -149463071 + (CA)n Simple_repeat Simple_repeat 2 180 0 2 662 1276 231 52 25 chr3 10137300 10137664 -149462119 - ORR1D1 LTR MaLR 0 374 1 2 662 546 57 0 0 chr3 10137713 10137783 -149462000 + (TTTC)n Simple_repeat Simple_repeat 2 71 0 2 662 675 230 76 48 chr3 10137999 10138209 -149461574 - B3 SINE B2 0 216 1 2 662 1226 167 70 19 chr3 10138705 10138962 -149460821 - Lx5 LINE L1 0 7050 6781 2 662 762 60 0 0 chr3 10139580 10139680 -149460103 + (TCCC)n Simple_repeat Simple_repeat 1 100 0 2 662 227 295 0 13 chr3 10141470 10141549 -149458234 + (TG)n Simple_repeat Simple_repeat 1 78 0 2 662 231 114 0 0 chr3 10141682 10141717 -149458066 + (TG)n Simple_repeat Simple_repeat 1 35 0 2 662 540 221 28 35 chr3 10141718 10141863 -149457920 - RSINE1 SINE B4 -13 152 9 2 662 216 0 0 0 chr3 10142080 10142104 -149457679 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 2 662 217 313 96 0 chr3 10142168 10142251 -149457532 - B4A SINE B4 -171 121 31 2 662 249 278 14 0 chr3 10142821 10142893 -149456890 - PB1D10 SINE Alu -7 110 38 2 662 278 190 17 17 chr3 10144010 10144069 -149455714 + B3 SINE B2 21 79 -137 2 662 2715 134 24 2 chr3 10144069 10144564 -149455219 + RLTR28 LTR ERVL 19 524 0 2 662 206 128 26 0 chr3 10145124 10145163 -149454620 + CT-rich Low_complexity Low_complexity 2 41 0 2 662 180 111 0 0 chr3 10145493 10145520 -149454263 + (T)n Simple_repeat Simple_repeat 1 27 0 2 662 225 0 0 0 chr3 10146469 10146494 -149453289 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 2 662 280 214 28 14 chr3 10146574 10146645 -149453138 - ID4 SINE ID -11 72 1 2 662 474 18 0 0 chr3 10147131 10147186 -149452597 + (TG)n Simple_repeat Simple_repeat 2 56 0 2 662 8057 70 3 2 chr3 10148182 10149749 -149450034 - L1_Mus2 LINE L1 0 6566 4998 2 662 260 294 94 8 chr3 10149830 10149957 -149449826 - L1M3c LINE L1 -4929 1212 1075 2 662 447 19 0 0 chr3 10151347 10151399 -149448384 + (TC)n Simple_repeat Simple_repeat 1 52 0 2 662 294 125 0 0 chr3 10151408 10151456 -149448327 + (CA)n Simple_repeat Simple_repeat 1 48 0 2 662 312 80 0 0 chr3 10151954 10151986 -149447797 + (T)n Simple_repeat Simple_repeat 1 32 0 2 662 1056 116 0 0 chr3 10151986 10152132 -149447651 - B1_Mus2 SINE Alu 0 147 2 2 662 312 80 0 0 chr3 10152132 10152149 -149447634 + (T)n Simple_repeat Simple_repeat 1 17 0 2 662 310 375 27 11 chr3 10152591 10152777 -149447006 - MLT1J-int LTR MaLR -1160 227 39 2 662 886 207 14 50 chr3 10152817 10152838 -149446945 - B3 SINE B2 -5 211 196 2 662 1691 197 132 5 chr3 10152838 10153210 -149446573 - MTD LTR MaLR 0 419 1 2 662 886 207 14 50 chr3 10153210 10153407 -149446376 - B3 SINE B2 -21 195 2 2 662 1584 169 172 0 chr3 10153572 10153885 -149445898 - ORR1B2 LTR MaLR 0 367 1 2 662 239 226 38 0 chr3 10154393 10154446 -149445337 - RSINE1 SINE B4 -29 136 82 2 662 322 229 167 0 chr3 10156104 10156200 -149443583 + ID_B1 SINE B4 99 210 -14 2 662 716 342 21 11 chr3 10156220 10156501 -149443282 + B4 SINE B4 7 290 -2 2 662 401 155 99 0 chr3 10158621 10158692 -149441091 + ID4_ SINE ID 3 80 -3 2 662 1385 153 152 41 chr3 10158988 10159356 -149440427 - RLTR9E LTR ERVK 0 409 1 2 662 464 107 25 62 chr3 10159356 10159436 -149440347 - MMETn-int LTR ERVK -1 7405 7329 2 662 532 182 342 10 chr3 10159436 10159723 -149440060 - RLTR13D6 LTR ERVK -365 537 154 2 662 5849 202 63 68 chr3 10159723 10162823 -149436960 - MMETn-int LTR ERVK -345 4499 2359 2 662 3084 159 37 32 chr3 10163370 10164078 -149435705 - MMETn-int LTR ERVK -4271 3135 1934 2 662 2187 184 72 102 chr3 10164100 10164785 -149434998 - MMETn-int LTR ERVK -5318 2088 1425 2 662 324 70 0 0 chr3 10164786 10164829 -149434954 + (T)n Simple_repeat Simple_repeat 1 43 0 2 662 12299 50 4 2 chr3 10164918 10167172 -149432611 - L1Md_F2 LINE L1 0 6582 4354 2 662 597 61 90 10 chr3 10167172 10167272 -149432511 - B2_Mm2 SINE B2 -86 109 2 2 662 294 189 217 0 chr3 10167273 10167379 -149432404 + RMER10A LTR ERVL 213 341 -101 2 662 465 232 191 7 chr3 10167468 10167620 -149432163 + ORR1D2 LTR MaLR 174 353 -17 2 662 494 321 116 16 chr3 10167764 10167954 -149431829 + ID_B1 SINE B4 1 209 -15 2 662 216 0 0 0 chr3 10168034 10168058 -149431725 + (A)n Simple_repeat Simple_repeat 1 24 0 2 662 2281 201 174 197 chr3 10168117 10168445 -149431338 - Lx7 LINE L1 0 7696 7345 2 662 256 262 80 24 chr3 10168445 10168522 -149431261 + RMER12 LTR ERVK 720 798 -524 2 662 1056 133 0 0 chr3 10168522 10168702 -149431081 + (TG)n Simple_repeat Simple_repeat 1 180 0 2 662 256 262 80 24 chr3 10168702 10168749 -149431034 + RMER12 LTR ERVK 799 851 -471 2 662 2281 201 174 197 chr3 10168749 10169032 -149430751 - Lx7 LINE L1 -352 7344 6960 2 662 239 214 51 114 chr3 10169032 10169111 -149430672 + MamGypLTR2 LTR Gypsy 260 333 -856 2 662 2281 201 174 197 chr3 10169111 10169259 -149430524 - Lx7 LINE L1 -352 6959 6756 2 662 459 73 0 0 chr3 10169259 10169327 -149430456 + (TCTA)n Simple_repeat Simple_repeat 1 68 0 2 662 2281 201 174 197 chr3 10169327 10169561 -149430222 - Lx7 LINE L1 -941 6755 6526 2 662 3213 133 57 35 chr3 10170345 10171196 -149428587 - L1_Mus1 LINE L1 0 6567 5673 2 662 10405 81 3 5 chr3 10171192 10172738 -149427045 - L1VL1 LINE L1 -3216 2667 1125 2 662 385 189 62 21 chr3 10172740 10172837 -149426946 - L1VL1 LINE L1 -6046 570 470 2 662 207 255 39 0 chr3 10173478 10173529 -149426254 - MER5B DNA MER1_type 0 178 126 2 662 1299 92 33 0 chr3 10173548 10173732 -149426051 + B2_Mm2 SINE B2 2 191 -4 2 662 335 271 50 8 chr3 10173734 10173853 -149425930 + MER57E1 LTR ERV1 13 136 -236 2 662 226 268 53 53 chr3 10173862 10173937 -149425846 + ID2 SINE ID 5 79 -4 2 662 465 302 64 0 chr3 10173980 10174152 -149425631 + MER57E1 LTR ERV1 188 370 -2 2 662 421 271 8 39 chr3 10174270 10174397 -149425386 - B3A SINE B2 -75 123 1 2 662 581 232 221 23 chr3 10174558 10174730 -149425053 + B3 SINE B2 1 206 -10 2 662 1152 75 0 7 chr3 10174742 10174890 -149424893 + B1_Mm SINE Alu 1 147 0 2 662 223 49 0 47 chr3 10174890 10174933 -149424850 + (CAAAA)n Simple_repeat Simple_repeat 5 45 0 2 662 272 231 103 28 chr3 10175212 10175319 -149424464 - PB1D9 SINE Alu 0 120 6 2 662 319 316 17 9 chr3 10175694 10175809 -149423974 + PB1D10 SINE Alu 1 116 -1 2 662 201 176 0 0 chr3 10175815 10175849 -149423934 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 2 662 256 188 0 0 chr3 10175883 10175931 -149423852 - MIR SINE MIR -41 221 174 2 662 323 288 38 53 chr3 10176391 10176523 -149423260 - ORR1E LTR MaLR -223 136 7 2 662 321 306 88 64 chr3 10176527 10176810 -149422973 + MLT1A0 LTR MaLR 20 309 -56 2 662 23 0 0 0 chr3 10176903 10176926 -149422857 + AT_rich Low_complexity Low_complexity 1 23 0 2 662 284 252 123 88 chr3 10177599 10177769 -149422014 - L1MC4 LINE L1 -380 7662 7487 2 662 672 294 25 0 chr3 10177984 10178185 -149421598 + MTEb LTR MaLR 70 275 -104 2 662 417 286 0 31 chr3 10178161 10178291 -149421492 + MTE2b LTR MaLR 197 322 -57 2 662 242 330 39 0 chr3 10178351 10178454 -149421329 - L1MC4 LINE L1 -809 7233 7127 2 662 692 287 54 72 chr3 10178608 10178969 -149420814 - L1MC4 LINE L1 -1038 7004 6574 2 662 367 0 79 0 chr3 10179224 10179287 -149420496 + (TTA)n Simple_repeat Simple_repeat 2 69 0 2 662 1160 48 7 14 chr3 10179288 10179436 -149420347 - B1_Mm SINE Alu 0 147 1 2 662 420 305 14 0 chr3 10179445 10179586 -149420197 - ORR1E LTR MaLR -210 149 7 2 662 851 322 86 18 chr3 10179785 10180285 -149419498 + L1ME2 LINE L1 5618 6151 -13 2 662 660 285 90 65 chr3 10181051 10181419 -149418364 + MTEa LTR MaLR 1 377 -2 2 662 210 128 0 0 chr3 10182615 10182654 -149417129 + (ATTG)n Simple_repeat Simple_repeat 2 40 0 2 662 399 92 0 0 chr3 10184197 10184262 -149415521 + (TG)n Simple_repeat Simple_repeat 1 65 0 2 662 771 198 17 72 chr3 10184347 10184486 -149415297 - RMER1C Other Other -17 1325 1198 2 662 1289 73 6 0 chr3 10184486 10184664 -149415119 + (GGAGAA)n Simple_repeat Simple_repeat 2 180 0 2 662 771 168 735 53 chr3 10184664 10184805 -149414978 - RMER1C Other Other -145 1197 958 2 662 210 266 101 38 chr3 10185180 10185325 -149414458 - MIRc SINE MIR -21 247 95 2 662 338 43 21 0 chr3 10185401 10185448 -149414335 + (CA)n Simple_repeat Simple_repeat 2 49 0 2 662 460 185 19 0 chr3 10185449 10185557 -149414226 + (CATATA)n Simple_repeat Simple_repeat 4 113 0 2 662 345 236 0 0 chr3 10185619 10185725 -149414058 + (CA)n Simple_repeat Simple_repeat 1 106 0 2 662 253 271 34 0 chr3 10186329 10186388 -149413395 + PB1D10 SINE Alu 40 100 -17 2 662 215 344 16 0 chr3 10187385 10187449 -149412334 - L2b LINE L2 -92 3283 3219 2 662 287 275 12 0 chr3 10187586 10187666 -149412117 - RSINE1 SINE B4 -3 162 82 2 662 259 304 99 81 chr3 10187678 10187839 -149411944 - B4A SINE B4 -127 165 2 2 662 199 89 43 43 chr3 10188592 10188639 -149411144 + GA-rich Low_complexity Low_complexity 1 47 0 2 662 218 98 49 0 chr3 10189241 10189282 -149410501 + (TCTCTG)n Simple_repeat Simple_repeat 6 48 0 2 662 387 41 0 0 chr3 10189282 10189331 -149410452 + (TG)n Simple_repeat Simple_repeat 2 50 0 2 662 873 281 61 40 chr3 10189360 10189638 -149410145 - B4 SINE B4 -8 284 1 2 662 1049 206 5 18 chr3 10189663 10189881 -149409902 - B3 SINE B2 -1 215 1 2 662 472 292 0 16 chr3 10189918 10190040 -149409743 - B1_Mur1 SINE Alu -1 148 29 2 662 1858 196 263 34 chr3 10190559 10190996 -149408787 + Lx5 LINE L1 6511 7047 -3 2 662 248 91 23 0 chr3 10191699 10191743 -149408040 + (TAAAA)n Simple_repeat Simple_repeat 2 46 0 2 662 651 240 109 17 chr3 10192025 10192199 -149407584 + RMER1B Other Other 7 196 -870 3 662 578 263 76 4 chr3 10192211 10192483 -149407300 - RMER1B Other Other -560 506 29 3 662 250 258 48 0 chr3 10192976 10193038 -149406745 - B3A SINE B2 -107 91 27 3 662 807 324 21 88 chr3 10193202 10193578 -149406205 + ORR1E LTR MaLR 1 351 -8 3 662 456 224 0 48 chr3 10194364 10194467 -149405316 + PB1D10 SINE Alu 20 117 0 3 662 339 204 120 20 chr3 10194971 10195071 -149404712 - PB1D10 SINE Alu -2 115 6 3 662 219 266 35 17 chr3 10195702 10195817 -149403966 + (TA)n Simple_repeat Simple_repeat 2 118 0 3 662 261 0 0 0 chr3 10196375 10196404 -149403379 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 3 662 909 168 200 0 chr3 10196480 10196665 -149403118 + URR1A DNA MER1_type 5 226 0 3 662 1109 81 0 0 chr3 10197874 10198022 -149401761 + B1_Mus1 SINE Alu 1 148 0 3 662 756 33 0 0 chr3 10198052 10198143 -149401640 + (TC)n Simple_repeat Simple_repeat 1 91 0 3 662 430 204 34 11 chr3 10198158 10198247 -149401536 - B1F1 SINE Alu -58 91 1 3 662 514 346 36 52 chr3 10199812 10200141 -149399642 - ORR1E LTR MaLR -34 325 2 3 662 295 305 12 24 chr3 10200141 10200213 -149399570 - ORR1D-int LTR MaLR -52 1528 1458 3 662 313 389 36 39 chr3 10200283 10200353 -149399430 - ORR1D-int LTR MaLR -182 1188 1114 3 662 297 0 0 0 chr3 10200353 10200386 -149399397 + (CA)n Simple_repeat Simple_repeat 2 34 0 3 662 313 389 36 39 chr3 10200386 10200623 -149399160 - ORR1D-int LTR MaLR -257 1113 883 3 662 259 242 59 29 chr3 10200694 10200796 -149398987 - L1MB3 LINE L1 -265 5918 5814 3 662 3723 274 61 60 chr3 10200801 10202143 -149397640 + Lx7 LINE L1 6064 7406 -290 3 662 399 41 0 0 chr3 10202147 10202196 -149397587 + (GA)n Simple_repeat Simple_repeat 2 50 0 3 662 232 167 0 85 chr3 10202302 10202361 -149397422 - L1M3 LINE L1 -349 5831 5778 3 662 258 182 38 25 chr3 10203699 10203778 -149396005 + MLT1A1 LTR MaLR 305 384 -24 3 662 349 256 41 82 chr3 10203817 10203915 -149395868 + PB1D10 SINE Alu 3 96 -21 3 662 495 148 0 0 chr3 10203919 10204007 -149395776 + (CA)n Simple_repeat Simple_repeat 1 88 0 3 662 334 39 39 0 chr3 10204662 10204714 -149395069 + (CAA)n Simple_repeat Simple_repeat 1 54 0 3 662 227 73 0 47 chr3 10209141 10209184 -149390599 + (GTTTG)n Simple_repeat Simple_repeat 5 45 0 3 662 492 220 28 0 chr3 10209184 10209293 -149390490 - B1_Mur2 SINE Alu -7 142 31 3 662 587 277 80 45 chr3 10210262 10210598 -149389185 + Charlie5 DNA MER1_type 2269 2616 -8 3 662 310 284 10 10 chr3 10211120 10211223 -149388560 + B1F SINE Alu 39 141 -8 3 662 351 0 0 0 chr3 10212371 10212410 -149387373 + (CA)n Simple_repeat Simple_repeat 2 40 0 3 662 294 98 0 0 chr3 10212478 10212529 -149387254 + (CA)n Simple_repeat Simple_repeat 1 51 0 3 662 216 0 0 0 chr3 10212708 10212732 -149387051 + (A)n Simple_repeat Simple_repeat 1 24 0 3 662 313 139 152 65 chr3 10213047 10213139 -149386644 + B1_Mus2 SINE Alu 48 147 0 3 662 574 215 32 32 chr3 10215737 10215862 -149383921 - B1_Mur2 SINE Alu -20 129 5 3 662 504 0 0 0 chr3 10216492 10216548 -149383235 + (CCCCCA)n Simple_repeat Simple_repeat 2 57 0 3 662 226 35 0 0 chr3 10217034 10217063 -149382720 - MT2_Mm LTR ERVL 0 493 465 3 662 16396 31 24 34 chr3 10217063 10217701 -149382082 - MERVL-int LTR ERVL -3488 1997 1329 3 662 4333 32 0 0 chr3 10217701 10218197 -149381586 + L1Md_T LINE L1 6086 6581 -1 3 662 16396 31 24 34 chr3 10218197 10218965 -149380818 - MERVL-int LTR ERVL -4157 1328 606 3 662 1194 61 0 0 chr3 10218965 10219112 -149380671 + B1_Mus2 SINE Alu 1 147 0 3 662 16396 31 24 34 chr3 10219112 10219721 -149380062 - MERVL-int LTR ERVL -4880 605 1 3 662 4141 45 0 14 chr3 10219721 10220221 -149379562 - MT2_Mm LTR ERVL 0 493 1 3 662 1565 42 21 0 chr3 10220328 10220517 -149379266 + B2_Mm1t SINE B2 1 193 0 3 662 25 0 0 0 chr3 10220542 10220567 -149379216 + AT_rich Low_complexity Low_complexity 1 25 0 3 662 1140 194 128 36 chr3 10220947 10221251 -149378532 - IAPEY3_LTR LTR ERVK 0 332 1 3 662 1426 186 55 17 chr3 10221251 10221595 -149378188 - IAPEz-int LTR ERVK 0 6481 6125 3 662 1740 113 58 34 chr3 10221612 10221938 -149377845 - IAPEY3-int LTR ERVK -342 7338 6965 3 662 1296 132 137 0 chr3 10221938 10222157 -149377626 - IAPEz-int LTR ERVK -1287 5255 5007 3 662 351 175 0 0 chr3 10222157 10222214 -149377569 - IAPEz-int LTR ERVK -6039 503 447 3 662 293 260 49 20 chr3 10222231 10222333 -149377450 - RMER16-int LTR ERVK -6015 1566 1462 3 662 274 211 58 0 chr3 10222396 10222448 -149377335 - RMER16-int LTR ERVK -983 1004 950 3 662 582 231 268 5 chr3 10222443 10222656 -149377127 - RMER16-int LTR ERVK -5475 662 394 3 662 611 226 176 0 chr3 10222632 10222791 -149376992 - RMER16-int LTR ERVK -4903 503 317 3 662 772 126 0 0 chr3 10222781 10222900 -149376883 - MMERVK10C-int LTR ERVK -6750 831 713 3 662 1409 99 45 9 chr3 10223003 10223332 -149376451 - MMERVK10C-int LTR ERVK -7155 426 1 3 82 1078 194 128 36 chr3 10223332 10223636 -149376147 - IAPEY3_LTR LTR ERVK 0 332 1 3 663 23629 156 22 5 chr3 10223724 10228198 -149371585 + L1VL4 LINE L1 948 5492 -394 3 663 2257 119 45 16 chr3 10228198 10228574 -149371209 + Lx2 LINE L1 6610 6996 -1 3 663 1388 132 0 5 chr3 10228983 10229189 -149370594 - Lx2B LINE L1 -482 6518 6314 3 663 1783 188 59 71 chr3 10229183 10229589 -149370194 + Lx2B LINE L1 6600 7000 0 3 663 279 0 0 0 chr3 10229700 10229731 -149370052 + (A)n Simple_repeat Simple_repeat 1 31 0 3 663 903 131 23 11 chr3 10230699 10230876 -149368907 + GA-rich Low_complexity Low_complexity 2 180 0 3 663 198 209 0 0 chr3 10232460 10232503 -149367280 + A-rich Low_complexity Low_complexity 1 43 0 3 663 277 257 0 41 chr3 10232601 10232674 -149367109 + ID4 SINE ID 3 72 -11 3 663 213 121 0 0 chr3 10232685 10232718 -149367065 + (CA)n Simple_repeat Simple_repeat 2 34 0 3 663 485 209 0 0 chr3 10232984 10233089 -149366694 + B4 SINE B4 142 246 -46 3 663 396 0 0 0 chr3 10233103 10233147 -149366636 + (CA)n Simple_repeat Simple_repeat 1 44 0 3 663 255 284 0 64 chr3 10233903 10233997 -149365786 - ORSL DNA Tip100 -7 268 181 3 663 23 33 0 0 chr3 10234690 10234720 -149365063 + AT_rich Low_complexity Low_complexity 1 30 0 3 663 712 297 17 0 chr3 10235186 10235361 -149364422 + ID_B1 SINE B4 29 206 -18 3 663 396 219 0 12 chr3 10235518 10235601 -149364182 + B4 SINE B4 1 82 -210 3 663 928 153 0 0 chr3 10235612 10235749 -149364034 + B1_Mus1 SINE Alu 2 138 -10 3 663 251 182 36 0 chr3 10235764 10235819 -149363964 + GA-rich Low_complexity Low_complexity 1 57 0 3 663 361 177 0 0 chr3 10236641 10236703 -149363080 + URR1A DNA MER1_type 63 124 -102 3 663 351 0 0 0 chr3 10236714 10236753 -149363030 + (TTTA)n Simple_repeat Simple_repeat 3 41 0 3 663 343 175 0 5 chr3 10236767 10236832 -149362951 - B2_Mm2 SINE B2 -107 109 47 3 663 1248 114 11 0 chr3 10236879 10237055 -149362728 - B2_Mm1t SINE B2 -14 179 2 3 663 437 119 119 0 chr3 10237058 10237142 -149362641 + URR1A DNA MER1_type 117 210 -16 3 663 292 50 0 0 chr3 10237170 10237210 -149362573 + URR1A DNA MER1_type 181 220 -6 3 663 23 54 0 0 chr3 10237273 10237310 -149362473 + AT_rich Low_complexity Low_complexity 1 37 0 3 663 3340 202 97 47 chr3 10237442 10238423 -149361360 + RMER1B Other Other 5 866 -200 3 663 1055 142 41 45 chr3 10238423 10238644 -149361139 + Lx LINE L1 6429 6648 -6 3 663 3340 188 34 47 chr3 10238644 10238740 -149361043 + RMER1B Other Other 867 938 -128 3 663 207 0 0 0 chr3 10238740 10238763 -149361020 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 3 663 3340 188 34 47 chr3 10238763 10238886 -149360897 + RMER1B Other Other 939 1062 -4 3 663 456 84 0 35 chr3 10239152 10239238 -149360545 + (CACCC)n Simple_repeat Simple_repeat 3 85 0 3 663 235 255 0 0 chr3 10239798 10239845 -149359938 + L1M5 LINE L1 5618 5664 -780 3 663 273 261 11 22 chr3 10240748 10240838 -149358945 - L1MCb LINE L1 -4944 1101 1013 3 663 270 356 18 18 chr3 10241444 10241610 -149358173 - L1MCb LINE L1 -6174 471 306 3 663 324 217 43 0 chr3 10241790 10241859 -149357924 - ID4 SINE ID -9 74 3 3 663 1000 136 6 6 chr3 10242369 10242546 -149357237 + (TTTC)n Simple_repeat Simple_repeat 3 179 0 3 663 209 57 0 28 chr3 10242852 10242888 -149356895 + (TTTG)n Simple_repeat Simple_repeat 3 37 0 3 663 245 295 83 10 chr3 10243224 10243320 -149356463 + PB1D10 SINE Alu 1 103 -14 3 663 510 17 0 0 chr3 10243320 10243379 -149356404 + (TAA)n Simple_repeat Simple_repeat 2 60 0 3 663 468 0 0 0 chr3 10243708 10243760 -149356023 + (TC)n Simple_repeat Simple_repeat 2 53 0 3 663 236 273 0 35 chr3 10244101 10244158 -149355625 - RSINE1 SINE B4 -106 59 5 3 663 216 228 0 34 chr3 10246179 10246238 -149353545 + (TATATG)n Simple_repeat Simple_repeat 1 57 0 3 663 187 250 0 22 chr3 10246478 10246523 -149353260 - MIR SINE MIR -76 132 89 3 663 234 0 0 0 chr3 10246691 10246717 -149353066 + (A)n Simple_repeat Simple_repeat 1 26 0 3 663 288 170 0 0 chr3 10246868 10246921 -149352862 + T-rich Low_complexity Low_complexity 1 53 0 3 663 462 83 0 0 chr3 10248695 10248767 -149351016 + (TC)n Simple_repeat Simple_repeat 1 72 0 3 663 328 304 56 0 chr3 10249096 10249221 -149350562 + MTE2a LTR MaLR 19 150 -269 3 663 283 286 50 66 chr3 10249275 10249473 -149350310 - RLTR46 LTR ERVK 0 320 126 3 663 498 236 140 21 chr3 10249640 10249826 -149349957 + MTE2a LTR MaLR 172 379 0 3 663 436 135 26 18 chr3 10250367 10250480 -149349303 + (TG)n Simple_repeat Simple_repeat 1 114 0 3 663 23 33 0 0 chr3 10250508 10250538 -149349245 + AT_rich Low_complexity Low_complexity 1 30 0 3 663 257 207 172 0 chr3 10250608 10250695 -149349088 - L1MB4 LINE L1 -2 6178 6077 3 663 299 297 88 23 chr3 10250748 10250965 -149348818 - L1MC4a LINE L1 -1992 5890 5660 3 663 291 182 185 19 chr3 10251040 10251109 -149348674 - RMER17C LTR ERVK -133 277 186 3 663 1010 38 18 24 chr3 10251109 10251273 -149348510 + (GAGAA)n Simple_repeat Simple_repeat 5 167 0 3 663 291 182 185 19 chr3 10251273 10251360 -149348423 - RMER17C LTR ERVK -225 185 96 3 663 294 273 90 90 chr3 10251423 10251624 -149348159 + MLT1D LTR MaLR 22 222 -283 3 663 380 273 113 21 chr3 10251585 10251727 -149348056 + RSINE1 SINE B4 8 162 -3 3 663 360 206 0 0 chr3 10252604 10252672 -149347111 + B1_Mus1 SINE Alu 1 68 -80 3 663 328 225 0 36 chr3 10252672 10252687 -149347096 + B4A SINE B4 86 165 -127 3 663 423 260 111 63 chr3 10254768 10254957 -149344826 - B3A SINE B2 0 198 1 3 663 414 246 180 16 chr3 10255000 10255128 -149344655 - B1_Mur1 SINE Alu 0 149 1 3 663 423 0 0 0 chr3 10255199 10255246 -149344537 + (TG)n Simple_repeat Simple_repeat 1 47 0 3 663 468 35 0 0 chr3 10256077 10256135 -149343648 + (TC)n Simple_repeat Simple_repeat 2 59 0 3 663 1280 234 89 0 chr3 10257003 10257328 -149342455 - Lx9 LINE L1 -104 7540 7187 3 663 776 125 0 8 chr3 10257328 10257457 -149342326 + (TTCTC)n Simple_repeat Simple_repeat 4 131 0 3 663 3797 195 66 38 chr3 10257460 10258279 -149341504 - Lx9 LINE L1 -444 7200 6359 3 663 398 263 228 82 chr3 10258916 10259228 -149340555 + MTE2a LTR MaLR 10 367 -12 4 663 372 289 39 0 chr3 10259280 10259384 -149340399 + MER5A DNA MER1_type 78 185 -4 4 663 226 171 104 91 chr3 10259392 10259469 -149340314 + L1MD3 LINE L1 7294 7371 -671 4 663 325 296 96 41 chr3 10259488 10259685 -149340098 + L1MD3 LINE L1 7512 7719 -276 4 663 326 327 64 0 chr3 10259850 10259960 -149339823 - LTR31 LTR ERV1 -280 339 223 4 663 217 276 92 0 chr3 10260767 10260854 -149338929 + PB1D10 SINE Alu 16 110 -7 4 663 396 236 224 33 chr3 10260910 10261175 -149338608 - MTE2b LTR MaLR 0 379 64 4 663 2200 175 98 12 chr3 10261310 10261801 -149337982 - RMER19B LTR ERVK -12 890 358 4 663 932 202 9 2 chr3 10261806 10262008 -149337775 - RMER19B LTR ERVK -675 227 49 4 663 1454 203 116 6 chr3 10262098 10262435 -149337348 + ORR1D1 LTR MaLR 1 374 0 4 663 269 363 10 0 chr3 10262726 10262739 -149337044 + ID_B1 SINE B4 69 171 -53 4 663 333 292 11 0 chr3 10262739 10262828 -149336955 + PB1D10 SINE Alu 1 90 -27 4 663 548 29 0 14 chr3 10262837 10262908 -149336875 + (GGGA)n Simple_repeat Simple_repeat 4 73 0 4 663 965 47 8 0 chr3 10262928 10263055 -149336728 + (GAGAA)n Simple_repeat Simple_repeat 5 132 0 4 663 1081 197 9 18 chr3 10263056 10263273 -149336510 + B3 SINE B2 2 216 0 4 663 1176 81 0 0 chr3 10264159 10264320 -149335463 + (TTTC)n Simple_repeat Simple_repeat 4 164 0 4 663 299 254 17 0 chr3 10264509 10264568 -149335215 + ID4_ SINE ID 15 74 -9 4 663 364 232 90 10 chr3 10264662 10264762 -149335021 + PB1D10 SINE Alu 8 115 -2 4 663 267 184 0 20 chr3 10264891 10264941 -149334842 + Lx8 LINE L1 7273 7321 -152 4 663 351 0 0 0 chr3 10264941 10264980 -149334803 + (TG)n Simple_repeat Simple_repeat 1 39 0 4 663 255 297 69 35 chr3 10264980 10265140 -149334643 + Lx9 LINE L1 7451 7618 -26 4 663 249 108 0 0 chr3 10265212 10265249 -149334534 + (A)n Simple_repeat Simple_repeat 1 37 0 4 663 235 276 103 15 chr3 10265328 10265464 -149334319 - MLT1E2 LTR MaLR -4 463 316 4 663 1254 183 63 4 chr3 10265466 10265718 -149334065 + ORR1C1 LTR MaLR 1 267 -111 4 663 2423 171 67 70 chr3 10265719 10266631 -149333152 + RLTR13D1 LTR ERVK 1 855 0 4 663 635 144 9 0 chr3 10266631 10266742 -149333041 + ORR1C1 LTR MaLR 263 374 -4 4 663 363 284 55 9 chr3 10266866 10266976 -149332807 + RSINE1 SINE B4 8 122 -43 4 663 219 36 0 0 chr3 10266979 10267007 -149332776 + (CA)n Simple_repeat Simple_repeat 1 28 0 4 663 277 296 89 27 chr3 10267018 10267164 -149332619 - MLT1E2 LTR MaLR -444 183 29 4 663 1873 164 0 16 chr3 10267448 10267757 -149332026 - Lx5 LINE L1 0 7050 6747 4 663 396 0 0 0 chr3 10268525 10268569 -149331214 + (TATTG)n Simple_repeat Simple_repeat 2 45 0 4 663 366 23 0 0 chr3 10268596 10268639 -149331144 + (TG)n Simple_repeat Simple_repeat 1 43 0 4 663 324 0 0 0 chr3 10268639 10268674 -149331109 + (GA)n Simple_repeat Simple_repeat 1 36 0 4 663 421 297 55 0 chr3 10268677 10268805 -149330978 - RSINE1 SINE B4 -28 137 3 4 663 230 21 41 41 chr3 10268896 10268945 -149330838 + (CAAAA)n Simple_repeat Simple_repeat 1 49 0 4 663 180 0 0 0 chr3 10269425 10269445 -149330338 + (TTAA)n Simple_repeat Simple_repeat 3 22 0 4 663 200 34 0 33 chr3 10269472 10269502 -149330281 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 4 663 258 388 0 10 chr3 10269544 10269648 -149330135 - ID_B1 SINE B4 -32 192 90 4 663 394 269 29 0 chr3 10269701 10269805 -149329978 - PB1D10 SINE Alu -9 108 2 4 663 1899 270 64 42 chr3 10269815 10270411 -149329372 + Lx7 LINE L1 6463 7071 -625 4 663 2254 163 58 2 chr3 10270482 10270881 -149328902 - MTC LTR MaLR 0 421 1 4 663 2976 155 59 98 chr3 10270881 10271648 -149328135 - MTC-int LTR MaLR 0 1258 522 4 663 186 143 0 0 chr3 10271846 10271881 -149327902 + (TTTG)n Simple_repeat Simple_repeat 1 35 0 4 663 847 154 20 34 chr3 10271881 10272029 -149327754 - B1_Mus2 SINE Alu -1 146 1 4 663 701 293 75 72 chr3 10272140 10272562 -149327221 + Lx8 LINE L1 5623 6046 -1650 4 663 1096 69 0 36 chr3 10272739 10272905 -149326878 + B2_Mm2 SINE B2 2 161 -34 4 663 441 0 0 0 chr3 10272905 10272954 -149326829 + (TAAA)n Simple_repeat Simple_repeat 1 49 0 4 663 534 31 0 0 chr3 10272956 10273020 -149326763 + (GA)n Simple_repeat Simple_repeat 1 64 0 4 663 2582 274 146 38 chr3 10273020 10274167 -149325616 + Lx8 LINE L1 6200 7470 -3 4 663 545 235 24 40 chr3 10274731 10274855 -149324928 + B1F SINE Alu 1 122 -27 4 663 284 241 12 0 chr3 10274835 10274917 -149324866 + B1F1 SINE Alu 67 132 -17 4 663 420 269 170 0 chr3 10275242 10275454 -149324329 + RMER20B LTR ERVK 236 483 -144 4 663 231 36 0 0 chr3 10275614 10275642 -149324141 + (CACG)n Simple_repeat Simple_repeat 4 31 0 4 663 223 328 108 15 chr3 10276932 10277062 -149322721 + B1F SINE Alu 1 142 -7 4 663 333 277 75 25 chr3 10279061 10279220 -149320563 + MLT2D LTR ERVL 82 248 -166 4 663 216 103 12 82 chr3 10279271 10279356 -149320427 + (TTTG)n Simple_repeat Simple_repeat 2 80 0 4 663 245 146 21 0 chr3 10279607 10279655 -149320128 + GA-rich Low_complexity Low_complexity 3 51 0 4 663 442 233 6 102 chr3 10279993 10280160 -149319623 + B3A SINE B2 1 151 -47 4 663 195 42 0 0 chr3 10280475 10280499 -149319284 + (TAA)n Simple_repeat Simple_repeat 1 24 0 4 663 1752 266 79 4 chr3 10281215 10281724 -149318059 - Lx8 LINE L1 -2 7471 6925 4 663 197 270 99 22 chr3 10282293 10282384 -149317399 - MER5B DNA MER1_type -17 161 64 4 663 369 233 20 46 chr3 10284011 10284131 -149315652 - MLT1C LTR MaLR -2 465 366 4 663 253 316 100 12 chr3 10284168 10284328 -149315455 - MLT1C LTR MaLR -216 174 1 4 663 686 261 13 13 chr3 10284410 10284569 -149315214 + RSINE1 SINE B4 6 164 -1 4 663 208 254 36 0 chr3 10285517 10285572 -149314211 + L2a LINE L2 3338 3394 -32 4 663 753 106 0 0 chr3 10285628 10285741 -149314042 + (GA)n Simple_repeat Simple_repeat 1 113 0 4 663 432 0 0 0 chr3 10286116 10286164 -149313619 + (TC)n Simple_repeat Simple_repeat 1 48 0 4 663 935 136 171 19 chr3 10286389 10286599 -149313184 - MTC LTR MaLR 0 421 180 4 663 1584 239 32 88 chr3 10286599 10287168 -149312615 + RLTR20A LTR ERVK 5 541 0 4 663 797 151 119 0 chr3 10287168 10287327 -149312456 - MTC LTR MaLR -238 183 6 4 663 730 301 142 4 chr3 10287332 10287579 -149312204 - B4 SINE B4 -3 289 9 4 663 285 75 0 0 chr3 10287670 10287710 -149312073 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 4 663 4084 134 78 41 chr3 10287725 10288098 -149311685 + RMER17D2 LTR ERVK 3 350 -459 4 663 992 53 0 8 chr3 10288098 10288230 -149311553 + (TCTCC)n Simple_repeat Simple_repeat 1 131 0 4 663 4084 134 78 41 chr3 10288230 10288299 -149311484 + RMER17D2 LTR ERVK 351 440 -369 4 663 456 19 0 0 chr3 10288299 10288352 -149311431 + (TC)n Simple_repeat Simple_repeat 2 54 0 4 663 4084 134 78 41 chr3 10288352 10288685 -149311098 + RMER17D2 LTR ERVK 441 807 -2 4 663 478 259 22 22 chr3 10288946 10289080 -149310703 + B1F SINE Alu 11 144 -5 4 663 427 299 0 8 chr3 10289204 10289322 -149310461 + PB1D10 SINE Alu 1 117 0 4 663 23 68 0 0 chr3 10289353 10289397 -149310386 + AT_rich Low_complexity Low_complexity 1 44 0 4 663 396 0 0 0 chr3 10290597 10290641 -149309142 + (TG)n Simple_repeat Simple_repeat 2 45 0 4 663 25 0 0 0 chr3 10290982 10291007 -149308776 + AT_rich Low_complexity Low_complexity 1 25 0 4 663 295 280 9 9 chr3 10293157 10293265 -149306518 - ID_B1 SINE B4 -26 198 91 4 663 364 233 0 11 chr3 10293838 10293929 -149305854 - PB1D10 SINE Alu -1 116 27 4 663 1704 197 113 31 chr3 10294686 10295174 -149304609 + RLTR12B LTR ERVK 1 528 0 4 663 479 223 9 18 chr3 10295180 10295294 -149304489 + MTEa LTR MaLR 264 376 -3 4 663 525 119 0 12 chr3 10295296 10295381 -149304402 + MTC LTR MaLR 1 84 -337 4 663 341 292 100 11 chr3 10295381 10295561 -149304222 + L1_Mur3 LINE L1 108 303 -7409 4 663 1126 199 52 10 chr3 10295555 10295860 -149303923 + L1_Mur3 LINE L1 843 1160 -6552 4 663 508 198 175 0 chr3 10295861 10295987 -149303796 + URR1A DNA MER1_type 1 148 -78 4 663 335 261 45 0 chr3 10296437 10296525 -149303258 - B1F1 SINE Alu -55 94 3 4 663 1252 34 0 0 chr3 10296655 10296802 -149302981 - B1_Mus2 SINE Alu 0 147 1 4 663 310 213 133 0 chr3 10297463 10297538 -149302245 + B1_Mus2 SINE Alu 58 142 -5 4 663 404 270 10 0 chr3 10298095 10298195 -149301588 - PB1D10 SINE Alu -8 109 9 4 663 211 282 24 71 chr3 10298120 10298204 -149301579 - B4A SINE B4 -129 163 84 4 663 266 267 125 37 chr3 10298411 10298547 -149301236 + ORR1E LTR MaLR 26 173 -186 4 663 261 138 38 0 chr3 10298856 10298936 -149300847 + (CA)n Simple_repeat Simple_repeat 1 83 0 4 663 1038 64 14 0 chr3 10299049 10299189 -149300594 + B1_Mus1 SINE Alu 7 148 0 4 663 233 29 0 29 chr3 10299192 10299227 -149300556 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 4 663 234 0 0 0 chr3 10299535 10299561 -149300222 + (T)n Simple_repeat Simple_repeat 1 26 0 4 663 1161 55 0 0 chr3 10299561 10299707 -149300076 - B1_Mm SINE Alu 0 147 2 4 663 512 173 23 0 chr3 10299732 10300138 -149299645 + (CA)n Simple_repeat Simple_repeat 1 415 0 4 663 243 292 31 20 chr3 10300739 10300837 -149298946 + CT-rich Low_complexity Low_complexity 3 101 0 4 663 274 247 0 90 chr3 10300845 10300934 -149298849 - B1_Mur2 SINE Alu -1 148 68 4 663 333 243 42 67 chr3 10300910 10301029 -149298754 - B1F1 SINE Alu -29 120 5 4 663 1396 71 5 16 chr3 10301570 10301756 -149298027 - B2_Mm1a SINE B2 -9 184 1 4 663 254 267 40 10 chr3 10301886 10301994 -149297789 - PB1D10 SINE Alu -34 113 1 4 663 306 271 0 0 chr3 10303469 10303539 -149296244 - PB1D10 SINE Alu -11 106 37 4 663 450 0 0 0 chr3 10303639 10303689 -149296094 + (CA)n Simple_repeat Simple_repeat 2 51 0 4 663 527 254 37 15 chr3 10304072 10304208 -149295575 - B1F1 SINE Alu -8 141 3 4 663 25 0 0 0 chr3 10304232 10304257 -149295526 + AT_rich Low_complexity Low_complexity 1 25 0 4 663 506 16 16 0 chr3 10304317 10304380 -149295403 + (CA)n Simple_repeat Simple_repeat 1 64 0 5 663 206 244 0 0 chr3 10305261 10305306 -149294477 + CT-rich Low_complexity Low_complexity 3 47 0 5 663 580 74 126 0 chr3 10305308 10305403 -149294380 - B1_Mus1 SINE Alu -2 146 40 5 663 320 260 9 74 chr3 10305416 10305524 -149294259 - ID_B1 SINE B4 -1 223 123 5 663 5512 51 24 5 chr3 10305524 10306316 -149293467 - RLTR13C2 LTR ERVK 0 893 1 5 663 287 306 18 36 chr3 10306317 10306429 -149293354 - ID_B1 SINE B4 -97 127 18 5 663 26 0 0 0 chr3 10307367 10307393 -149292390 + AT_rich Low_complexity Low_complexity 1 26 0 5 663 1577 37 0 21 chr3 10307393 10307584 -149292199 + B2_Mm1a SINE B2 1 187 -6 5 663 238 267 26 26 chr3 10307588 10307665 -149292118 - ID2 SINE ID -3 80 4 5 663 1087 78 7 0 chr3 10307966 10308107 -149291676 + B1_Mus1 SINE Alu 1 142 -6 5 663 321 135 0 0 chr3 10308110 10308162 -149291621 + (GGGA)n Simple_repeat Simple_repeat 4 55 0 5 663 924 98 0 0 chr3 10308164 10308297 -149291486 + (GAAA)n Simple_repeat Simple_repeat 4 136 0 5 663 204 128 24 49 chr3 10308434 10308475 -149291308 + MER5B DNA MER1_type 128 167 -11 5 663 603 246 7 21 chr3 10308592 10308733 -149291050 - B1F1 SINE Alu -2 147 9 5 663 275 284 11 43 chr3 10308659 10308751 -149291032 - B4A SINE B4 -125 167 79 5 663 2163 106 0 0 chr3 10309564 10309884 -149289899 + ORR1A2 LTR MaLR 1 320 -7 5 663 840 176 0 25 chr3 10309905 10310062 -149289721 + URR1B DNA MER1_type 1 153 -72 5 663 622 177 77 0 chr3 10310067 10310197 -149289586 - B1_Mur4 SINE Alu 0 150 11 5 663 440 151 23 0 chr3 10310192 10310278 -149289505 + URR1A DNA MER1_type 138 225 -1 4 663 508 304 14 0 chr3 10311997 10312135 -149287648 - RSINE1 SINE B4 -24 141 2 5 663 357 292 0 0 chr3 10312500 10312596 -149287187 + PB1D10 SINE Alu 9 104 -13 5 663 180 0 0 0 chr3 10312596 10312616 -149287167 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 5 663 508 309 25 55 chr3 10313714 10313916 -149285867 + ID_B1 SINE B4 2 197 -27 5 663 193 274 40 14 chr3 10314719 10314793 -149284990 - L2a LINE L2 -26 3400 3325 5 663 373 252 48 0 chr3 10316481 10316584 -149283199 + B3 SINE B2 107 214 -2 5 663 385 253 11 0 chr3 10316713 10316800 -149282983 + PB1D10 SINE Alu 1 88 -29 5 663 231 103 0 0 chr3 10316819 10316858 -149282925 + (CAA)n Simple_repeat Simple_repeat 2 40 0 5 663 275 282 14 0 chr3 10317207 10317278 -149282505 + PB1D10 SINE Alu 1 72 -45 5 663 453 202 77 0 chr3 10317357 10317461 -149282322 + PB1D7 SINE Alu 2 113 -7 5 663 266 288 136 0 chr3 10319223 10319348 -149280435 - RMER30 DNA MER1_type -54 148 7 5 663 364 221 36 55 chr3 10320262 10320372 -149279411 - PB1D10 SINE Alu 0 117 10 5 663 272 378 0 0 chr3 10320541 10320660 -149279123 - PB1 SINE Alu -7 120 2 5 663 267 231 0 58 chr3 10320731 10320800 -149278983 + PB1D10 SINE Alu 24 88 -29 5 663 248 104 42 0 chr3 10320801 10320849 -149278934 + (CATATA)n Simple_repeat Simple_repeat 4 53 0 5 663 1194 48 7 0 chr3 10320993 10321138 -149278645 + B1_Mus2 SINE Alu 2 147 0 5 663 23 0 0 0 chr3 10321165 10321188 -149278595 + AT_rich Low_complexity Low_complexity 1 23 0 5 663 266 259 25 0 chr3 10321360 10321441 -149278342 + PB1D10 SINE Alu 34 116 -1 5 663 23 54 0 0 chr3 10321906 10321943 -149277840 + AT_rich Low_complexity Low_complexity 1 37 0 5 663 475 230 87 22 chr3 10322006 10322144 -149277639 + B1_Mur2 SINE Alu 2 148 -1 5 663 356 143 14 0 chr3 10322155 10322225 -149277558 + GA-rich Low_complexity Low_complexity 4 74 0 5 663 296 257 128 0 chr3 10322305 10322414 -149277369 + MER2 DNA MER2_type 154 276 -69 5 663 415 288 47 16 chr3 10322467 10322483 -149277300 - B1_Mur3 SINE Alu -18 131 5 5 663 427 262 28 0 chr3 10322483 10322590 -149277193 - ID_B1 SINE B4 -29 195 86 5 663 1044 131 0 0 chr3 10324246 10324516 -149275267 + (CA)n Simple_repeat Simple_repeat 1 270 0 5 663 190 248 27 82 chr3 10324550 10324642 -149275141 - MIR SINE MIR -25 237 150 5 663 1390 91 0 5 chr3 10324642 10324829 -149274954 + B2_Mm2 SINE B2 2 187 -8 5 663 190 248 27 82 chr3 10324829 10324846 -149274937 - MIR SINE MIR -113 149 134 5 663 453 214 74 41 chr3 10324852 10324974 -149274809 - B1F SINE Alu 0 149 24 5 663 797 224 105 162 chr3 10324992 10325412 -149274371 + MTD LTR MaLR 10 405 -14 5 663 830 220 39 0 chr3 10325461 10325643 -149274140 - B3 SINE B2 -25 191 3 5 663 246 303 46 0 chr3 10327479 10327588 -149272195 - PB1D9 SINE Alu -6 114 1 5 663 239 272 35 132 chr3 10329214 10329267 -149270516 - B1F2 SINE Alu -3 146 20 5 663 335 216 182 0 chr3 10329267 10329355 -149270428 - ID_B1 SINE B4 -20 204 101 5 663 231 284 52 39 chr3 10330126 10330203 -149269580 - B1F1 SINE Alu -66 83 6 5 663 292 167 57 16 chr3 10331602 10331724 -149268059 + (TTATA)n Simple_repeat Simple_repeat 4 130 0 5 663 237 296 100 20 chr3 10332004 10332104 -149267679 - PB1D10 SINE Alu -8 109 2 5 663 250 237 0 17 chr3 10332170 10332230 -149267553 - MIRm SINE MIR -132 144 86 5 663 259 136 0 33 chr3 10333066 10333127 -149266656 + (CA)n Simple_repeat Simple_repeat 1 59 0 5 663 266 250 14 0 chr3 10333536 10333608 -149266175 - B1_Mur4 SINE Alu -37 112 40 5 663 202 315 21 21 chr3 10334120 10334214 -149265569 + (CATA)n Simple_repeat Simple_repeat 4 97 0 5 663 751 19 18 53 chr3 10336763 10336876 -149262907 + B1_Mm SINE Alu 39 147 0 5 663 203 149 43 0 chr3 10336877 10336924 -149262859 + A-rich Low_complexity Low_complexity 3 51 0 5 663 699 111 70 0 chr3 10337438 10337654 -149262129 + C-rich Low_complexity Low_complexity 1 231 0 5 663 382 181 75 0 chr3 10337661 10337755 -149262028 - B1_Mur2 SINE Alu -15 134 34 5 663 220 307 67 0 chr3 10337809 10337884 -149261899 + PB1D7 SINE Alu 40 119 -1 5 663 549 257 50 0 chr3 10337895 10338035 -149261748 + RSINE1 SINE B4 12 158 -7 5 663 2779 173 158 10 chr3 10338661 10339263 -149260520 + RLTR17 LTR ERVK 2 692 0 5 663 216 97 0 0 chr3 10339399 10339430 -149260353 + (A)n Simple_repeat Simple_repeat 1 31 0 5 663 368 119 0 0 chr3 10339431 10339490 -149260293 + B1_Mm SINE Alu 89 147 0 5 663 21 36 0 0 chr3 10341834 10341862 -149257921 + AT_rich Low_complexity Low_complexity 1 28 0 5 663 1451 34 6 11 chr3 10341868 10342045 -149257738 + B2_Mm2 SINE B2 2 177 -18 5 663 3229 107 63 13 chr3 10342652 10343193 -149256590 + RLTR20D LTR ERVK 1 568 0 5 663 1488 208 109 29 chr3 10343863 10344249 -149255534 + MTD LTR MaLR 3 419 0 5 663 240 216 54 0 chr3 10344330 10344404 -149255379 - ID_B1 SINE B4 -31 193 116 5 663 260 225 286 22 chr3 10345009 10345100 -149254683 - PB1D9 SINE Alu -5 115 1 5 663 448 187 233 16 chr3 10345604 10345781 -149254002 + B3 SINE B2 1 216 0 5 663 245 291 63 40 chr3 10346412 10346529 -149253254 - PB1D7 SINE Alu -34 116 1 5 663 410 0 20 0 chr3 10346737 10346787 -149252996 + (TA)n Simple_repeat Simple_repeat 2 52 0 5 663 287 223 71 41 chr3 10347904 10348002 -149251781 + PB1D7 SINE Alu 19 119 -1 5 663 198 0 0 0 chr3 10348607 10348629 -149251154 + (TTTG)n Simple_repeat Simple_repeat 3 24 0 5 663 1067 108 0 0 chr3 10348630 10348778 -149251005 - B1_Mus1 SINE Alu 0 148 1 5 663 354 232 60 35 chr3 10349354 10349470 -149250313 - PB1D7 SINE Alu -1 119 1 5 663 243 274 35 23 chr3 10349872 10349958 -149249825 - RSINE1 SINE B4 0 165 79 5 663 304 243 5 111 chr3 10351318 10351508 -149248275 + (CGGGG)n Simple_repeat Simple_repeat 5 174 0 5 663 2080 59 56 0 chr3 10351750 10352020 -149247763 + L1_Mus1 LINE L1 6283 6567 0 5 663 1426 47 12 0 chr3 10352982 10353153 -149246630 + B2_Mm1a SINE B2 2 174 -19 5 663 28 29 0 0 chr3 10353227 10353262 -149246521 + AT_rich Low_complexity Low_complexity 1 35 0 5 663 226 67 0 0 chr3 10354342 10354372 -149245411 + L1M4 LINE L1 5406 5435 -749 5 82 3604 218 57 29 chr3 10354369 10355026 -149244757 + Lx5 LINE L1 5491 6207 -843 5 664 1926 170 81 21 chr3 10355026 10355410 -149244373 - MTB_Mm LTR MaLR 0 407 1 5 664 3604 274 75 66 chr3 10355410 10356275 -149243508 + Lx5 LINE L1 6208 7680 -16 5 664 893 216 11 5 chr3 10356334 10356520 -149243263 - B2_Mm2 SINE B2 -7 188 2 5 664 575 293 6 12 chr3 10356725 10356894 -149242889 + B3A SINE B2 1 168 -30 5 664 1441 83 10 0 chr3 10357650 10357842 -149241941 + B2_Mm2 SINE B2 2 195 0 5 664 396 72 43 0 chr3 10357853 10357922 -149241861 + (GGGA)n Simple_repeat Simple_repeat 4 75 0 5 664 955 108 25 0 chr3 10357922 10358080 -149241703 + (GAAA)n Simple_repeat Simple_repeat 3 164 0 5 664 239 227 22 50 chr3 10358573 10358754 -149241029 + (TG)n Simple_repeat Simple_repeat 2 177 0 5 664 21 0 0 0 chr3 10361399 10361420 -149238363 + AT_rich Low_complexity Low_complexity 1 21 0 5 664 1274 172 42 194 chr3 10361577 10361819 -149237964 - ORR1B2 LTR MaLR 0 367 156 5 664 2247 156 10 24 chr3 10361819 10362232 -149237551 + RLTR9E LTR ERVK 1 407 -2 5 664 1274 172 42 194 chr3 10362232 10362422 -149237361 - ORR1B2 LTR MaLR -212 155 1 5 664 1845 171 28 43 chr3 10362422 10362809 -149236974 - MTC LTR MaLR -38 383 3 5 664 232 282 50 75 chr3 10362809 10362962 -149236821 + B2_Mm1a SINE B2 37 185 -8 5 664 202 372 35 0 chr3 10363212 10363298 -149236485 + L2b LINE L2 3224 3312 -63 5 664 297 0 0 0 chr3 10363671 10363704 -149236079 + (TCTA)n Simple_repeat Simple_repeat 4 36 0 5 664 7083 85 52 14 chr3 10363708 10364694 -149235089 - RLTR13D5 LTR ERVK 0 1023 1 6 664 1156 66 12 0 chr3 10364698 10364865 -149234918 + (TCTA)n Simple_repeat Simple_repeat 4 172 0 6 664 402 20 0 0 chr3 10364865 10364903 -149234880 + (CA)n Simple_repeat Simple_repeat 2 39 0 6 664 279 0 0 0 chr3 10364903 10364934 -149234849 + (GA)n Simple_repeat Simple_repeat 2 32 0 6 664 402 20 0 0 chr3 10364934 10364944 -149234839 + (CA)n Simple_repeat Simple_repeat 2 11 0 6 664 333 0 0 0 chr3 10365866 10365903 -149233880 + (TG)n Simple_repeat Simple_repeat 2 38 0 6 664 641 253 101 55 chr3 10367347 10367694 -149232089 + MER96B DNA hAT 1 363 -54 6 664 221 163 0 0 chr3 10367898 10367941 -149231842 + A-rich Low_complexity Low_complexity 3 45 0 6 664 297 291 23 0 chr3 10370039 10370125 -149229658 - B1_Mur4 SINE Alu -62 88 1 6 664 1006 94 25 0 chr3 10370127 10370286 -149229497 + (TATG)n Simple_repeat Simple_repeat 2 164 0 6 664 749 187 7 22 chr3 10370308 10370445 -149229338 - B1_Mur3 SINE Alu -13 136 2 6 664 360 365 39 31 chr3 10370447 10370676 -149229107 + LTR82A LTR ERVL 273 503 -369 6 664 291 318 29 52 chr3 10370839 10370975 -149228808 + LTR82A LTR ERVL 724 856 -16 6 664 531 0 0 0 chr3 10372550 10372609 -149227174 + (TG)n Simple_repeat Simple_repeat 2 60 0 6 664 942 156 0 0 chr3 10373189 10373362 -149226421 + (CA)n Simple_repeat Simple_repeat 2 174 0 6 664 302 192 214 8 chr3 10373454 10373585 -149226198 - L1MA4 LINE L1 -376 5924 5767 6 664 1833 77 4 4 chr3 10373601 10373849 -149225934 + L1_Mus2 LINE L1 6316 6563 -3 6 664 369 0 0 0 chr3 10375278 10375319 -149224464 + (TC)n Simple_repeat Simple_repeat 1 41 0 6 664 216 0 0 0 chr3 10375319 10375342 -149224441 + (CA)n Simple_repeat Simple_repeat 1 24 0 6 664 402 21 0 0 chr3 10375342 10375389 -149224394 + (GA)n Simple_repeat Simple_repeat 2 48 0 6 664 1805 189 14 28 chr3 10375394 10375754 -149224029 - ORR1B2 LTR MaLR -8 359 5 6 664 67 55 0 0 chr3 10375987 10376096 -149223687 + AT_rich Low_complexity Low_complexity 1 109 0 6 664 304 130 56 0 chr3 10377053 10377107 -149222676 - ORR1D1 LTR MaLR 0 384 328 6 664 3283 174 43 66 chr3 10377125 10377738 -149222045 - Lx5 LINE L1 0 7050 6432 6 664 1062 73 167 18 chr3 10377738 10377906 -149221877 - B2_Mm2 SINE B2 0 195 3 6 664 3283 174 43 66 chr3 10377906 10377973 -149221810 - Lx5 LINE L1 -619 6431 6386 6 664 1187 206 79 17 chr3 10377975 10378266 -149221517 - ORR1D1 LTR MaLR -54 320 12 6 664 24 0 0 0 chr3 10379010 10379034 -149220749 + AT_rich Low_complexity Low_complexity 1 24 0 6 664 767 223 138 0 chr3 10379117 10379305 -149220478 - B3 SINE B2 -2 214 1 6 664 184 313 91 0 chr3 10382121 10382220 -149217563 + L3 LINE CR1 3187 3294 -1195 6 664 241 289 63 95 chr3 10382683 10382809 -149216974 + B4 SINE B4 161 282 -10 6 664 4716 56 10 3 chr3 10383251 10383843 -149215940 - L1Md_F3 LINE L1 0 6584 5989 6 664 614 80 11 0 chr3 10383884 10383972 -149215811 - BC1_Mm scRNA scRNA -62 90 2 6 664 1565 52 5 0 chr3 10384254 10384445 -149215338 - B2_Mm1a SINE B2 -1 192 1 6 664 237 386 18 0 chr3 10385088 10385202 -149214581 + MIR3 SINE MIR 64 179 -29 6 664 773 259 21 0 chr3 10387881 10388074 -149211709 + B3 SINE B2 2 198 -18 6 664 296 284 5 19 chr3 10388225 10388332 -149211451 + B1F SINE Alu 38 144 -5 6 664 1139 141 22 88 chr3 10388498 10388724 -149211059 + RLTR42 LTR ERVK 1 211 -28 6 664 244 282 51 13 chr3 10388978 10389057 -149210726 + ID4_ SINE ID 2 83 0 6 664 257 250 12 0 chr3 10391308 10391388 -149208395 + (TTTG)n Simple_repeat Simple_repeat 2 82 0 6 664 357 278 88 92 chr3 10391826 10391891 -149207892 + MLT1A0 LTR MaLR 3 69 -296 6 664 1952 121 50 44 chr3 10391891 10392212 -149207571 - ORR1A3 LTR MaLR -1 325 3 6 664 357 278 88 92 chr3 10392212 10392384 -149207399 + MLT1A0 LTR MaLR 70 239 -126 6 664 21 0 0 0 chr3 10392857 10392878 -149206905 + AT_rich Low_complexity Low_complexity 1 21 0 6 664 28 0 0 0 chr3 10393198 10393226 -149206557 + AT_rich Low_complexity Low_complexity 1 28 0 6 664 225 169 85 61 chr3 10393479 10393561 -149206222 + L1MEf LINE L1 1133 1216 -4984 6 664 360 265 135 8 chr3 10393566 10393699 -149206084 - MLT1A1 LTR MaLR 0 408 259 6 664 21 36 0 0 chr3 10394060 10394088 -149205695 + AT_rich Low_complexity Low_complexity 1 28 0 6 664 225 360 60 20 chr3 10394204 10394321 -149205462 - PB1D10 SINE Alu -8 112 6 6 664 637 239 68 32 chr3 10394316 10394434 -149205349 + Charlie5 DNA MER1_type 2335 2456 -168 6 664 4683 148 113 32 chr3 10394434 10395269 -149204514 + RMER19B LTR ERVK 1 902 0 6 664 637 239 68 32 chr3 10395269 10395370 -149204413 + Charlie5 DNA MER1_type 2457 2562 -62 6 664 489 281 35 66 chr3 10395350 10395548 -149204235 - B3 SINE B2 0 216 25 6 664 570 302 89 38 chr3 10397221 10397513 -149202270 + MER44B DNA MER2_type 144 450 -100 6 664 698 175 175 0 chr3 10397874 10398045 -149201738 + RLTR24 LTR ERV1 329 529 0 6 664 261 0 0 0 chr3 10398604 10398633 -149201150 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 6 664 757 257 159 16 chr3 10399025 10399333 -149200450 + MTEa LTR MaLR 28 379 0 6 664 421 256 97 76 chr3 10399412 10399649 -149200134 - L1M2 LINE L1 -2632 3511 3270 6 664 490 202 90 30 chr3 10399698 10399831 -149199952 - Lx7 LINE L1 -82 7614 7474 6 664 229 338 45 51 chr3 10400744 10400900 -149198883 - MLT1D LTR MaLR 0 505 351 6 664 267 320 13 0 chr3 10400963 10401041 -149198742 - MLT1D LTR MaLR -340 165 87 6 664 198 0 0 0 chr3 10401142 10401164 -149198619 + (TG)n Simple_repeat Simple_repeat 1 22 0 6 664 226 365 47 0 chr3 10401241 10401326 -149198457 - L2b LINE L2 -22 3353 3265 6 664 2104 158 69 26 chr3 10401725 10402103 -149197680 + ORR1B1 LTR MaLR 1 394 0 6 664 504 279 88 50 chr3 10402605 10402865 -149196918 + B4 SINE B4 4 273 -19 6 664 390 21 0 0 chr3 10402883 10402930 -149196853 + (CA)n Simple_repeat Simple_repeat 1 47 0 6 664 1476 259 50 43 chr3 10403167 10403627 -149196156 + RLTR28B LTR ERVL 15 477 -4 6 664 208 380 111 0 chr3 10404519 10404627 -149195156 - MIRc SINE MIR -118 150 31 6 664 891 274 90 94 chr3 10404910 10405409 -149194374 + RLTR12B LTR ERVK 1 497 -31 6 664 596 277 14 7 chr3 10405763 10405901 -149193882 + B1F2 SINE Alu 10 148 -1 6 664 25 31 0 0 chr3 10406893 10406925 -149192858 + AT_rich Low_complexity Low_complexity 1 32 0 6 664 290 45 0 22 chr3 10406926 10406971 -149192812 + (TTTA)n Simple_repeat Simple_repeat 2 45 0 6 664 1148 58 0 0 chr3 10406971 10407108 -149192675 - B1_Mus2 SINE Alu -9 138 2 6 664 230 222 33 55 chr3 10407127 10407242 -149192541 + (TATAA)n Simple_repeat Simple_repeat 3 117 0 6 664 906 241 84 0 chr3 10407242 10407433 -149192350 + B3 SINE B2 1 207 -9 6 664 230 222 33 55 chr3 10407433 10407498 -149192285 + (TATAA)n Simple_repeat Simple_repeat 3 64 0 6 664 877 207 40 0 chr3 10408950 10409124 -149190659 - ORR1D1 LTR MaLR -193 181 1 6 664 5938 208 48 48 chr3 10409124 10410493 -149189290 - ORR1D1-int LTR MaLR 0 1370 1 6 664 791 182 159 0 chr3 10410493 10410669 -149189114 - ORR1D1 LTR MaLR 0 384 181 6 664 4372 94 47 2 chr3 10410671 10411265 -149188518 + Lx LINE L1 6034 6654 0 6 664 259 85 21 21 chr3 10411271 10411319 -149188464 + (GGGAGA)n Simple_repeat Simple_repeat 2 49 0 6 664 433 174 23 119 chr3 10411319 10411463 -149188320 - ORR1D1 LTR MaLR -190 194 44 6 664 374 200 168 8 chr3 10411493 10411624 -149188159 - Lx5 LINE L1 -3 7047 6896 6 664 7098 176 60 38 chr3 10411630 10413087 -149186696 - Lx5 LINE L1 -37 7013 5516 6 664 2343 97 52 0 chr3 10413087 10413397 -149186386 - ORR1A2 LTR MaLR 0 327 2 6 664 7098 140 50 13 chr3 10413397 10414275 -149185508 - Lx5 LINE L1 -362 5515 4607 6 664 1042 141 0 0 chr3 10414706 10414862 -149184921 - Lx5 LINE L1 -1266 4614 4459 6 664 1774 140 35 16 chr3 10414862 10415175 -149184608 + ORR1A4 LTR MaLR 1 319 -10 6 664 2442 144 45 0 chr3 10415181 10415578 -149184205 - Lx5 LINE L1 -1415 4462 4048 6 664 209 33 33 0 chr3 10416178 10416208 -149183575 + (TTA)n Simple_repeat Simple_repeat 3 33 0 6 664 2481 79 136 11 chr3 10416218 10416578 -149183205 - L1_Mus3 LINE L1 -18 6620 6216 6 664 1325 41 0 0 chr3 10416594 10416741 -149183042 - B1_Mus2 SINE Alu 0 147 1 6 664 724 151 17 171 chr3 10417368 10417544 -149182239 - B1_Mur3 SINE Alu 0 149 1 6 664 324 323 85 16 chr3 10419473 10419602 -149180181 - RSINE1 SINE B4 -26 139 2 6 664 342 268 12 35 chr3 10419602 10419671 -149180112 - B4 SINE B4 -71 221 155 6 664 2235 178 43 5 chr3 10419792 10420187 -149179596 + MTC LTR MaLR 12 421 0 6 664 303 301 135 24 chr3 10421931 10422101 -149177682 + L1M5 LINE L1 4624 4812 -1334 6 664 220 250 19 19 chr3 10423033 10423086 -149176697 - ID_B1 SINE B4 -94 130 78 6 664 366 61 0 0 chr3 10424004 10424053 -149175730 + (TATG)n Simple_repeat Simple_repeat 3 51 0 6 664 225 0 0 0 chr3 10424053 10424077 -149175706 + (CA)n Simple_repeat Simple_repeat 2 26 0 6 664 265 289 56 16 chr3 10424171 10424410 -149175373 + L1M4b LINE L1 1544 1947 -5155 6 664 261 298 138 17 chr3 10424562 10424736 -149175047 + L1M4b LINE L1 2037 2231 -5103 6 664 244 337 77 33 chr3 10424741 10425062 -149174721 + L1M5 LINE L1 5466 5790 -452 6 664 371 250 124 42 chr3 10425215 10425499 -149174284 + L1MB8 LINE L1 5900 6184 0 6 664 187 369 66 28 chr3 10427325 10427431 -149172352 - L3 LINE CR1 -196 4293 4184 6 664 229 308 136 52 chr3 10427523 10427677 -149172106 - MIRb SINE MIR -83 185 19 6 664 878 207 85 5 chr3 10429178 10429367 -149170416 - B3 SINE B2 -8 208 5 6 664 564 73 0 0 chr3 10429381 10429463 -149170320 + (CA)n Simple_repeat Simple_repeat 1 82 0 6 664 443 258 114 42 chr3 10430521 10430687 -149169096 - B3A SINE B2 -16 182 5 6 664 715 245 14 7 chr3 10430751 10430899 -149168884 - B1_Mur2 SINE Alu 0 149 1 6 664 313 301 35 26 chr3 10431020 10431136 -149168647 - PB1D10 SINE Alu 0 117 1 6 664 434 283 103 36 chr3 10431683 10431848 -149167935 - MER105 DNA DNA -1 203 28 6 664 1310 44 0 0 chr3 10431895 10432055 -149167728 + B2_Mm2 SINE B2 3 162 -33 6 664 216 0 0 0 chr3 10432055 10432079 -149167704 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 6 664 240 132 26 0 chr3 10432083 10432121 -149167662 + B3A SINE B2 1 39 -159 7 664 1214 104 57 52 chr3 10432125 10432317 -149167466 + B2_Mm2 SINE B2 2 194 -1 7 664 1697 52 0 0 chr3 10432317 10432509 -149167274 + B2_Mm1a SINE B2 2 193 0 7 664 237 108 0 0 chr3 10433108 10433145 -149166638 + (GAAA)n Simple_repeat Simple_repeat 2 38 0 7 664 1346 167 254 29 chr3 10433198 10433580 -149166203 + RLTR20B2 LTR ERVK 1 468 -95 7 664 519 123 0 0 chr3 10433581 10433662 -149166121 + (TG)n Simple_repeat Simple_repeat 1 81 0 7 664 406 250 50 10 chr3 10433667 10433768 -149166015 + RLTR20B2 LTR ERVK 453 557 -3 7 664 306 242 144 40 chr3 10434657 10434782 -149165001 - L1M5 LINE L1 -626 5547 5410 7 664 664 269 91 19 chr3 10434865 10435110 -149164673 + MLT1E2 LTR MaLR 271 525 -99 7 664 203 271 43 0 chr3 10435534 10435604 -149164179 + GA-rich Low_complexity Low_complexity 2 74 0 7 664 495 197 197 0 chr3 10435737 10435854 -149163929 - RSINE1 SINE B4 -23 142 3 7 664 744 214 27 7 chr3 10436278 10436424 -149163359 + B1_Mur2 SINE Alu 1 149 0 7 664 210 203 0 33 chr3 10436424 10436436 -149163347 + A-rich Low_complexity Low_complexity 9 19 0 7 664 1288 41 7 0 chr3 10436436 10436582 -149163201 + B1_Mm SINE Alu 1 147 0 7 664 210 203 0 33 chr3 10436582 10436623 -149163160 + A-rich Low_complexity Low_complexity 20 60 0 7 664 234 272 143 8 chr3 10436733 10436859 -149162924 + L1M5 LINE L1 4440 4582 -1564 7 664 317 309 210 14 chr3 10437291 10437577 -149162206 + L1M5 LINE L1 5354 5695 -478 7 664 366 222 105 57 chr3 10438858 10438982 -149160801 - ID_B1 SINE B4 -8 216 87 7 664 24 53 0 0 chr3 10439847 10439885 -149159898 + GC_rich Low_complexity Low_complexity 1 38 0 7 664 237 159 0 0 chr3 10441111 10441155 -149158628 + (TA)n Simple_repeat Simple_repeat 2 45 0 7 664 829 243 45 108 chr3 10442038 10442306 -149157477 + B4A SINE B4 2 252 -40 7 664 23 0 0 0 chr3 10442536 10442559 -149157224 + AT_rich Low_complexity Low_complexity 1 23 0 7 664 369 267 68 8 chr3 10444824 10444956 -149154827 - L1MA9 LINE L1 -8 6304 6165 7 664 288 120 0 0 chr3 10445006 10445056 -149154727 + (TG)n Simple_repeat Simple_repeat 1 50 0 7 664 387 0 0 0 chr3 10445056 10445099 -149154684 + (GA)n Simple_repeat Simple_repeat 1 43 0 7 664 331 256 63 13 chr3 10445106 10445185 -149154598 - B1F1 SINE Alu -63 86 4 7 664 182 232 0 44 chr3 10445241 10445286 -149154497 - MIR SINE MIR -11 251 209 7 664 3862 64 12 62 chr3 10445407 10445926 -149153857 + MT2_Mm LTR ERVL 1 493 0 7 664 266 0 29 0 chr3 10446013 10446047 -149153736 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 7 664 233 313 0 24 chr3 10446997 10447082 -149152701 + MLT1N2 LTR MaLR 447 529 -33 7 664 194 125 0 0 chr3 10447427 10447459 -149152324 - L2a LINE L2 -1 3425 3394 7 664 634 51 10 20 chr3 10447578 10447678 -149152105 + (TCTA)n Simple_repeat Simple_repeat 4 102 0 7 664 438 200 44 0 chr3 10447748 10447838 -149151945 + RSINE1 SINE B4 5 98 -67 7 664 441 0 0 0 chr3 10447865 10447914 -149151869 + (CA)n Simple_repeat Simple_repeat 1 49 0 7 664 793 255 77 5 chr3 10447922 10448131 -149151652 - MTE2a LTR MaLR -43 336 113 7 664 706 149 8 47 chr3 10448131 10448258 -149151525 - Lx4A LINE L1 -277 6781 6660 7 664 426 39 0 0 chr3 10448276 10448328 -149151455 + (TC)n Simple_repeat Simple_repeat 2 53 0 7 664 413 282 188 18 chr3 10448330 10448442 -149151341 - RSINE1 SINE B4 -33 132 2 7 664 3852 95 38 2 chr3 10448927 10449454 -149150329 + Lx3_Mus LINE L1 6456 7001 -8 7 664 27 0 0 0 chr3 10450689 10450716 -149149067 + AT_rich Low_complexity Low_complexity 1 27 0 7 664 235 325 33 128 chr3 10450750 10450930 -149148853 - RSINE1 SINE B4 0 165 3 7 664 306 313 141 65 chr3 10451357 10451620 -149148163 - L2b LINE L2 -10 3365 3083 7 664 213 237 0 0 chr3 10451813 10451872 -149147911 + CT-rich Low_complexity Low_complexity 1 59 0 7 664 201 44 0 100 chr3 10452710 10452760 -149147023 + (TGGGGG)n Simple_repeat Simple_repeat 3 47 0 7 664 2097 96 13 23 chr3 10452825 10453135 -149146648 + IAPLTR2b LTR ERVK 1 307 -20 7 664 16609 107 30 24 chr3 10453152 10455714 -149144069 + IAPEz-int LTR ERVK 1 2774 -3707 7 664 12014 49 3 1 chr3 10455712 10457133 -149142650 + IAPEz-int LTR ERVK 4001 5424 -1057 7 664 4609 88 38 21 chr3 10457131 10457789 -149141994 + IAPEz-int LTR ERVK 5813 6481 0 7 664 2047 115 9 6 chr3 10457789 10458104 -149141679 + IAPLTR2b LTR ERVK 1 316 -11 7 664 354 312 110 59 chr3 10458609 10458928 -149140855 - MLT1G3 LTR MaLR -169 426 47 7 664 397 246 14 27 chr3 10458938 10459055 -149140728 - B1_Mur1 SINE Alu -1 148 1 7 664 207 348 133 22 chr3 10459190 10459325 -149140458 - MIRb SINE MIR -50 218 69 7 664 816 119 0 17 chr3 10459325 10459445 -149140338 - B1_Mur3 SINE Alu -27 122 5 7 664 411 38 0 0 chr3 10459962 10460015 -149139768 + (CA)n Simple_repeat Simple_repeat 2 54 0 7 664 35877 39 47 7 chr3 10460079 10465966 -149133817 - L1Md_F2 LINE L1 -2 6580 462 7 664 4674 54 0 28 chr3 10466389 10466961 -149132822 - L1Md_F2 LINE L1 -11 6571 6016 7 664 23 0 0 0 chr3 10467314 10467337 -149132446 + AT_rich Low_complexity Low_complexity 1 23 0 7 664 833 229 240 18 chr3 10467593 10467906 -149131877 - MER57D LTR ERV1 -20 414 8 7 664 372 305 126 5 chr3 10467913 10468111 -149131672 - L1MDa LINE L1 -6409 224 3 7 664 899 248 45 0 chr3 10468240 10468438 -149131345 + B3 SINE B2 2 208 -8 7 664 250 344 24 8 chr3 10468462 10468585 -149131198 + PB1 SINE Alu 1 125 -2 7 664 263 316 0 21 chr3 10468789 10468886 -149130897 + GA-rich Low_complexity Low_complexity 2 96 0 7 664 329 308 9 18 chr3 10469251 10469360 -149130423 - PB1D10 SINE Alu 0 117 10 7 664 280 270 119 10 chr3 10469571 10469672 -149130111 - MLT1G3 LTR MaLR -63 532 421 7 664 197 325 25 38 chr3 10469997 10470077 -149129706 + L2a LINE L2 3327 3405 -21 7 664 867 298 113 7 chr3 10471623 10472039 -149127744 + L1MA4A LINE L1 5476 5935 -368 7 664 277 279 0 0 chr3 10472049 10472110 -149127673 + (TG)n Simple_repeat Simple_repeat 1 61 0 7 664 32 0 0 0 chr3 10473573 10473605 -149126178 + AT_rich Low_complexity Low_complexity 1 32 0 7 664 2630 149 10 2 chr3 10473660 10474070 -149125713 - MTC LTR MaLR -8 413 1 7 664 827 176 0 0 chr3 10474609 10474734 -149125049 - B1_Mur3 SINE Alu -15 134 10 7 664 412 328 0 43 chr3 10474734 10474749 -149125034 - ID_B1 SINE B4 -15 209 76 7 664 276 323 104 62 chr3 10474779 10475086 -149124697 - ORR1D1 LTR MaLR -10 364 45 7 664 273 326 54 38 chr3 10475857 10476042 -149123741 + MIR SINE MIR 17 204 -58 7 664 218 343 14 7 chr3 10476089 10476233 -149123550 + (TATG)n Simple_repeat Simple_repeat 3 147 0 7 664 196 231 44 0 chr3 10476233 10476324 -149123459 + (TATATG)n Simple_repeat Simple_repeat 2 96 0 7 664 257 277 0 11 chr3 10476341 10476520 -149123263 + (TATATG)n Simple_repeat Simple_repeat 2 178 0 7 664 405 285 5 53 chr3 10476551 10476697 -149123086 + (TATATG)n Simple_repeat Simple_repeat 1 139 0 7 664 501 17 0 0 chr3 10476697 10476755 -149123028 + (TTTTA)n Simple_repeat Simple_repeat 2 59 0 7 664 1085 103 7 0 chr3 10476755 10476891 -149122892 - B1_Mus2 SINE Alu -10 137 1 7 664 405 285 5 53 chr3 10476891 10477003 -149122780 + (TATATG)n Simple_repeat Simple_repeat 2 108 0 7 664 270 277 0 0 chr3 10477022 10477141 -149122642 + (TATATG)n Simple_repeat Simple_repeat 6 124 0 7 664 227 336 17 42 chr3 10477148 10477266 -149122517 - RMER12 LTR ERVK -472 850 736 7 664 416 309 18 0 chr3 10477266 10477434 -149122349 + (CATATA)n Simple_repeat Simple_repeat 6 176 0 7 664 243 239 0 0 chr3 10477441 10477508 -149122275 + (TA)n Simple_repeat Simple_repeat 1 67 0 7 664 432 255 8 16 chr3 10477519 10477773 -149122010 + (CATATA)n Simple_repeat Simple_repeat 1 251 0 7 664 233 299 11 0 chr3 10477776 10477863 -149121920 + (TA)n Simple_repeat Simple_repeat 2 89 0 7 664 744 264 6 25 chr3 10478510 10478673 -149121110 - RSINE1 SINE B4 -2 163 4 7 664 1521 266 26 0 chr3 10479717 10480059 -149119724 - Lx6 LINE L1 -198 7262 6912 7 664 7626 90 8 10 chr3 10480063 10481026 -149118757 - L1_Mus3 LINE L1 -1 6637 5677 7 664 3219 81 126 0 chr3 10481026 10481448 -149118335 - MT2C_Mm LTR ERVL 0 475 1 7 664 7626 98 5 10 chr3 10481448 10481875 -149117908 - L1_Mus3 LINE L1 -207 5676 5250 7 664 1976 149 24 90 chr3 10481876 10482297 -149117486 - RLTR9C LTR ERVK 0 393 1 7 664 429 133 26 13 chr3 10482297 10482373 -149117410 - RMER16-int LTR ERVK -1 7405 7329 7 664 6453 208 82 46 chr3 10482573 10484692 -149115091 - RMER16-int LTR ERVK -1230 4176 2358 7 664 2999 61 29 10 chr3 10484692 10485107 -149114676 - RLTR13D1 LTR ERVK -156 650 228 7 664 5544 115 53 15 chr3 10485107 10485752 -149114031 - ETnERV2-int LTR ERVK -3994 3412 2739 7 10 7612 65 5 0 chr3 10485752 10486641 -149113142 + RLTR13B1 LTR ERVK 1 893 0 7 665 5544 115 53 15 chr3 10486641 10486878 -149112905 - ETnERV2-int LTR ERVK -4668 2738 2496 7 665 5399 143 69 10 chr3 10486903 10487862 -149111921 - ETnERV2-int LTR ERVK -5321 2085 1071 7 665 1556 192 41 61 chr3 10487877 10488270 -149111513 - ETnERV2-int LTR ERVK -2928 386 2 7 665 1802 154 26 92 chr3 10488277 10488692 -149111091 - RLTR9C LTR ERVK -5 388 1 7 665 25818 111 7 37 chr3 10488692 10493688 -149106095 - L1VL1 LINE L1 -629 5254 409 7 665 401 206 65 0 chr3 10493706 10493798 -149105985 - Lx6 LINE L1 -622 6838 6741 7 665 214 156 0 0 chr3 10493803 10493835 -149105948 + polypyrimidine Low_complexity Low_complexity 5 36 0 7 665 626 186 11 23 chr3 10493836 10494012 -149105771 + CT-rich Low_complexity Low_complexity 2 175 0 7 665 2261 278 71 41 chr3 10494015 10494813 -149104970 - Lx6 LINE L1 -724 6736 5915 7 665 15009 168 27 29 chr3 10494827 10497341 -149102442 - Lx6 LINE L1 -66 5814 3315 7 665 4584 47 2 8 chr3 10497341 10497856 -149101927 - LTRIS3 LTR ERV1 0 512 1 7 665 15009 168 27 29 chr3 10497856 10498379 -149101404 - Lx6 LINE L1 -2566 3314 2783 7 665 1586 135 83 0 chr3 10498394 10498660 -149101123 - Lx2B LINE L1 -23 6977 6690 7 665 1567 132 82 4 chr3 10498656 10498937 -149100846 - Lx6 LINE L1 -3084 2796 2494 7 665 652 101 10 20 chr3 10499078 10499179 -149100604 + MTC LTR MaLR 1 100 -321 7 665 2541 132 21 0 chr3 10499181 10499567 -149100216 - ORR1B1 LTR MaLR 0 394 1 7 665 1541 170 25 18 chr3 10499568 10499844 -149099939 + MTC LTR MaLR 99 376 -45 7 665 440 180 0 115 chr3 10499847 10499960 -149099823 - MT2B2 LTR ERVL -8 576 477 7 665 291 128 0 0 chr3 10499960 10499999 -149099784 - MERVL_2A-int LTR ERVL -5225 536 498 7 665 1624 222 19 45 chr3 10500005 10500425 -149099358 - MERVL-int LTR ERVL -5076 409 1 1 665 4164 103 34 0 chr3 10500425 10501006 -149098777 - MT2B LTR ERVL 0 601 1 1 665 890 161 0 20 chr3 10501046 10501192 -149098591 - B1_Mus2 SINE Alu 0 147 5 2 665 388 100 0 91 chr3 10501193 10501219 -149098564 + MTD LTR MaLR 360 384 -35 3 665 2311 105 9 6 chr3 10501219 10501545 -149098238 - ORR1A2 LTR MaLR 0 327 1 4 665 388 100 0 91 chr3 10501545 10501584 -149098199 + MTD LTR MaLR 385 419 0 3 665 4468 147 9 31 chr3 10502885 10503068 -149096715 + L1VL4 LINE L1 193 374 -5928 5 665 6488 99 10 34 chr3 10503068 10504070 -149095713 + RLTR13A3 LTR ERVK 1 978 0 6 665 11984 124 39 57 chr3 10504070 10507035 -149092748 + L1VL4 LINE L1 375 3272 -287 5 665 1554 130 0 0 chr3 10507035 10507288 -149092495 + L1_Mur2 LINE L1 4235 4487 -1390 7 665 6254 169 23 9 chr3 10507289 10508433 -149091350 + Lx2 LINE L1 5837 6996 -1 8 665 598 358 64 39 chr3 10509070 10509381 -149090402 - ORR1E LTR MaLR -31 328 10 9 665 641 174 28 0 chr3 10509555 10509664 -149090119 + PB1D9 SINE Alu 9 120 0 1 665 29 0 0 0 chr3 10509882 10509911 -149089872 + AT_rich Low_complexity Low_complexity 1 29 0 1 665 268 264 0 27 chr3 10510683 10510757 -149089026 - Lx8 LINE L1 -150 7323 7252 1 665 3189 176 68 141 chr3 10512550 10513458 -149086325 - RMER21B LTR ERV1 0 842 1 1 665 645 249 162 88 chr3 10513806 10514145 -149085638 - MTEa LTR MaLR 0 379 16 1 665 32 43 0 0 chr3 10514619 10514665 -149085118 + AT_rich Low_complexity Low_complexity 1 46 0 1 665 5908 60 1 4 chr3 10514665 10515419 -149084364 - L1Md_F2 LINE L1 -19 6563 5812 1 665 3902 85 76 0 chr3 10515419 10516009 -149083774 - L1_Mus4 LINE L1 -255 6381 5747 1 665 1240 152 0 9 chr3 10516008 10516234 -149083549 + L1_Mur2 LINE L1 3719 3942 -1935 1 665 393 136 0 0 chr3 10516623 10516689 -149083094 - L1_Mur2 LINE L1 -1966 3911 3846 1 665 3047 107 31 2 chr3 10516715 10517172 -149082611 - L1_Mus3 LINE L1 0 6638 6169 2 665 538 100 0 0 chr3 10517177 10517257 -149082526 + L1_Mur2 LINE L1 4652 4731 -1146 1 665 239 224 0 50 chr3 10517257 10517295 -149082488 + A-rich Low_complexity Low_complexity 1 35 0 2 665 2150 79 10 7 chr3 10517295 10517628 -149082155 + L1_Mus1 LINE L1 6275 6567 0 2 665 208 318 48 0 chr3 10518038 10518101 -149081682 - L2c LINE L2 -18 3369 3304 2 665 25 0 0 0 chr3 10518127 10518152 -149081631 + AT_rich Low_complexity Low_complexity 1 25 0 2 665 231 380 130 25 chr3 10518467 10518629 -149081154 - MLT1G LTR MaLR -329 262 84 2 665 1255 246 83 42 chr3 10519896 10520392 -149079391 + L1MA5 LINE L1 5440 5955 -345 2 665 252 279 80 17 chr3 10520697 10520912 -149078871 + L1MA5 LINE L1 6001 6231 -69 2 665 195 100 0 0 chr3 10520912 10520942 -149078841 + (TG)n Simple_repeat Simple_repeat 2 31 0 2 665 252 279 80 17 chr3 10520942 10520963 -149078820 + L1MA5 LINE L1 6232 6252 -48 2 665 313 0 0 0 chr3 10521799 10521835 -149077948 + U2 snRNA snRNA 1 36 -152 2 665 1614 196 39 3 chr3 10522018 10522356 -149077427 - Lx LINE L1 0 6654 6305 2 665 23 33 0 0 chr3 10523296 10523326 -149076457 + AT_rich Low_complexity Low_complexity 1 30 0 3 665 244 234 0 0 chr3 10524119 10524166 -149075617 + MIR SINE MIR 16 62 -200 3 665 36 23 0 0 chr3 10524220 10524263 -149075520 + AT_rich Low_complexity Low_complexity 1 43 0 3 665 740 255 125 0 chr3 10524263 10524455 -149075328 - B3 SINE B2 0 216 1 3 665 193 291 81 0 chr3 10524457 10524543 -149075240 + MIR SINE MIR 124 216 -46 3 665 441 0 0 0 chr3 10525588 10525637 -149074146 + (TCTA)n Simple_repeat Simple_repeat 2 50 0 3 665 6614 168 90 30 chr3 10525638 10527855 -149071928 - Lx5 LINE L1 -12 7038 4683 3 665 21 0 0 0 chr3 10527856 10527877 -149071906 + AT_rich Low_complexity Low_complexity 1 21 0 3 665 26 30 0 0 chr3 10528031 10528064 -149071719 + AT_rich Low_complexity Low_complexity 1 33 0 3 665 202 227 13 13 chr3 10528472 10528548 -149071235 + CT-rich Low_complexity Low_complexity 2 77 0 3 665 671 232 0 14 chr3 10528549 10528689 -149071094 - B1_Mus1 SINE Alu -10 138 1 3 665 342 161 0 0 chr3 10528707 10528800 -149070983 + (CAGA)n Simple_repeat Simple_repeat 4 96 0 4 665 2905 52 52 0 chr3 10528802 10529171 -149070612 - RLTR10 LTR ERVK -2 388 1 4 665 8040 40 0 2 chr3 10529171 10530167 -149069616 - RLTR10-int LTR ERVK -1 1986 993 4 665 3817 48 20 12 chr3 10530700 10531311 -149068472 - RLTR10-int LTR ERVK -995 992 302 4 665 294 214 104 28 chr3 10531311 10531417 -149068366 - RLTR10 LTR ERVK 0 390 277 4 665 1341 72 6 0 chr3 10531442 10531623 -149068160 - RLTR10-int LTR ERVK -7399 182 1 4 665 3010 58 11 0 chr3 10531625 10532006 -149067777 - RLTR10 LTR ERVK -2 388 4 4 665 279 0 0 0 chr3 10532006 10532037 -149067746 + (CAGA)n Simple_repeat Simple_repeat 4 34 0 4 665 2128 286 89 18 chr3 10532037 10532917 -149066866 - Lx9 LINE L1 -181 7463 6522 4 665 430 306 128 63 chr3 10532976 10533311 -149066472 - ORR1D2 LTR MaLR -8 362 6 4 665 1038 308 117 17 chr3 10533302 10533829 -149065954 - MLT1E2-int LTR MaLR -39 1541 989 4 665 499 338 72 14 chr3 10534177 10534384 -149065399 + B4A SINE B4 32 250 -42 4 665 7706 129 74 56 chr3 10534385 10534892 -149064891 + L1_Mur2 LINE L1 1451 2059 -3818 4 665 333 0 0 0 chr3 10534892 10534929 -149064854 + (CA)n Simple_repeat Simple_repeat 2 38 0 4 665 7706 129 74 56 chr3 10534929 10535065 -149064718 + L1_Mur2 LINE L1 2060 2140 -3737 4 665 1151 81 0 0 chr3 10535065 10535213 -149064570 + B1_Mus1 SINE Alu 1 148 0 5 665 7706 129 74 56 chr3 10535213 10536221 -149063562 + L1_Mur2 LINE L1 2141 3133 -2744 4 665 11257 182 60 60 chr3 10536276 10540160 -149059623 + L1VL2 LINE L1 428 4317 -1569 5 665 4314 103 9 39 chr3 10540167 10540842 -149058941 + Lx LINE L1 6000 6654 0 5 665 344 359 86 52 chr3 10540965 10541291 -149058492 - L1MEc LINE L1 -6003 397 61 5 665 578 171 0 31 chr3 10541798 10541814 -149057969 - Lx3_Mus LINE L1 -1091 5918 5906 5 665 3059 157 37 15 chr3 10541814 10542358 -149057425 - Lx LINE L1 -3 6651 6096 5 665 769 119 0 0 chr3 10542358 10542476 -149057307 - Lx2 LINE L1 -1092 5905 5788 5 665 472 344 65 70 chr3 10543312 10543653 -149056130 + ORR1E LTR MaLR 1 339 -20 5 665 5883 229 32 11 chr3 10543664 10544965 -149054818 - Lx5 LINE L1 -32 7018 5691 5 665 3471 45 28 7 chr3 10544965 10545392 -149054391 + RLTR10C LTR ERVK 1 436 0 5 665 5883 198 40 20 chr3 10545392 10546434 -149053349 - Lx5 LINE L1 -1360 5690 4624 5 665 344 77 0 0 chr3 10546434 10546486 -149053297 + L1_Mus2 LINE L1 6513 6564 -2 6 665 31 26 0 0 chr3 10546506 10546544 -149053239 + AT_rich Low_complexity Low_complexity 1 38 0 6 665 8123 130 31 7 chr3 10546544 10548504 -149051279 - Lx4A LINE L1 0 7058 5033 6 665 4688 101 13 10 chr3 10548504 10549205 -149050578 + L1_Mus3 LINE L1 5935 6637 -1 6 665 6029 153 15 2 chr3 10549238 10550517 -149049266 + Lx LINE L1 5357 6654 0 6 665 243 0 0 0 chr3 10550535 10550562 -149049221 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 6 665 377 292 0 7 chr3 10550575 10550720 -149049063 - L1_Mur3 LINE L1 -6660 1052 909 6 665 369 0 0 0 chr3 10552212 10552253 -149047530 + (TC)n Simple_repeat Simple_repeat 1 41 0 6 665 3130 250 83 22 chr3 10552265 10553100 -149046683 - Lx5 LINE L1 -32 7018 6132 6 665 546 16 0 0 chr3 10553100 10553163 -149046620 + (TC)n Simple_repeat Simple_repeat 1 63 0 6 665 3130 250 83 22 chr3 10553163 10553174 -149046609 - Lx5 LINE L1 -919 6131 6121 6 665 2296 182 15 25 chr3 10553179 10553855 -149045928 + Lx5 LINE L1 5403 6080 -970 6 665 1243 187 20 73 chr3 10554941 10555299 -149044484 - Lx7 LINE L1 0 7696 7358 7 665 683 201 7 0 chr3 10555361 10555515 -149044268 - Lx2B LINE L1 -9 6991 6837 7 665 6662 148 3 23 chr3 10555515 10556797 -149042986 - L1_Mur2 LINE L1 -1729 4148 2892 7 665 3515 142 19 6 chr3 10556804 10557896 -149041887 - L1VL2 LINE L1 -2073 1542 438 7 665 354 349 56 88 chr3 10558600 10558942 -149040841 + ORR1E LTR MaLR 1 331 -28 7 665 318 304 75 67 chr3 10558972 10559092 -149040691 + B4A SINE B4 3 123 -169 7 665 833 141 0 13 chr3 10559094 10559252 -149040531 - L1_Mus4 LINE L1 -1 6635 6480 7 665 25 31 0 0 chr3 10560199 10560231 -149039552 + AT_rich Low_complexity Low_complexity 1 32 0 7 665 274 311 0 13 chr3 10561067 10561142 -149038641 + ID4_ SINE ID 6 79 -4 7 665 3518 223 63 70 chr3 10561608 10561721 -149038062 - RMER1A Other Other -7 1023 911 7 665 447 19 0 0 chr3 10561721 10561773 -149038010 + (CA)n Simple_repeat Simple_repeat 2 53 0 8 665 3518 229 61 69 chr3 10561773 10562783 -149037000 - RMER1A Other Other -120 910 38 7 665 412 341 81 20 chr3 10563023 10563124 -149036659 - L1MEf LINE L1 -4047 2153 2037 8 665 2983 65 5 5 chr3 10563124 10563511 -149036272 - L1Md_F2 LINE L1 -11 6571 6185 8 665 412 341 81 20 chr3 10563511 10563705 -149036078 - L1MEf LINE L1 -4164 2036 1840 8 665 21 0 0 0 chr3 10564195 10564216 -149035567 + AT_rich Low_complexity Low_complexity 1 21 0 8 665 731 192 192 0 chr3 10565419 10565591 -149034192 + Lx9 LINE L1 7230 7434 -210 8 665 2032 150 32 0 chr3 10565737 10566083 -149033700 + Lx4A LINE L1 6355 6711 -347 8 665 327 259 18 44 chr3 10566082 10566195 -149033588 - Lx9 LINE L1 -1233 6411 6302 8 665 2170 147 6 3 chr3 10566225 10566567 -149033216 + Lx4A LINE L1 6712 7054 -4 8 665 245 298 11 77 chr3 10566891 10566982 -149032801 - MER58D DNA MER1_type 0 386 302 8 665 351 274 26 9 chr3 10567119 10567233 -149032550 + Lx9 LINE L1 6295 6410 -1234 8 665 315 336 49 49 chr3 10567255 10567377 -149032406 + RLTR16 LTR ERVK 32 153 -352 8 665 4188 190 68 26 chr3 10567881 10568844 -149030939 + Lx9 LINE L1 6416 7418 -226 8 665 306 0 0 0 chr3 10568844 10568878 -149030905 + (CA)n Simple_repeat Simple_repeat 2 35 0 9 665 5391 143 18 37 chr3 10568941 10570769 -149029014 + L1_Mus2 LINE L1 273 2113 -3770 9 665 6599 87 13 17 chr3 10570766 10572101 -149027682 + L1_Mus2 LINE L1 5239 6566 0 9 665 253 190 216 20 chr3 10572259 10572361 -149027422 - Charlie9 DNA MER1_type -1950 807 686 9 665 230 281 31 0 chr3 10572444 10572508 -149027275 + MLT2F LTR ERVL 33 98 -530 9 665 246 347 192 18 chr3 10572761 10573037 -149026746 + MLT2F LTR ERVL 282 605 -58 9 665 234 292 75 62 chr3 10573471 10573617 -149026166 + MIR SINE MIR 113 260 -2 9 665 221 389 68 36 chr3 10574226 10574445 -149025338 + MIRb SINE MIR 17 242 -26 9 665 590 316 58 5 chr3 10574472 10574660 -149025123 + B3A SINE B2 1 198 0 9 665 672 119 0 0 chr3 10574913 10575031 -149024752 + (GGA)n Simple_repeat Simple_repeat 3 120 0 9 665 429 338 78 19 chr3 10575942 10576096 -149023687 + RSINE1 SINE B4 3 165 0 9 665 250 329 13 0 chr3 10576096 10576175 -149023608 + (CA)n Simple_repeat Simple_repeat 1 80 0 9 665 3161 88 18 0 chr3 10576816 10577268 -149022515 - L1_Mus1 LINE L1 -325 6242 5783 1 665 30899 89 20 10 chr3 10577263 10583409 -149016374 - L1Md_F2 LINE L1 -3 6579 371 1 665 4508 103 1 6 chr3 10583423 10584096 -149015687 - L1_Mus1 LINE L1 -109 5774 5105 1 665 3358 140 18 7 chr3 10584143 10584712 -149015071 - Lx3_Mus LINE L1 -8 7001 6427 1 665 675 247 46 0 chr3 10584731 10584905 -149014878 - Lx6 LINE L1 -127 7333 7152 1 665 6795 66 7 0 chr3 10584909 10585790 -149013993 - RLTR13B1 LTR ERVK 0 893 7 1 665 837 289 18 4 chr3 10585825 10586054 -149013729 - Lx6 LINE L1 -310 7150 6919 1 665 369 377 74 37 chr3 10586102 10586427 -149013356 + Charlie9 DNA MER1_type 2177 2513 -244 1 665 2560 205 150 58 chr3 10586621 10586893 -149012890 - RMER13A LTR ERVK 0 908 522 1 665 423 0 0 0 chr3 10586893 10586940 -149012843 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 665 2560 214 149 68 chr3 10586940 10587522 -149012261 - RMER13A LTR ERVK -349 559 5 1 665 279 306 11 23 chr3 10587502 10587589 -149012194 - MTE2b LTR MaLR -4 375 290 1 665 373 308 22 0 chr3 10587644 10587735 -149012048 - MTE2b LTR MaLR -182 197 105 1 665 4080 33 10 0 chr3 10589082 10589570 -149010213 - L1Md_F3 LINE L1 -15 6569 6077 1 665 8960 59 5 0 chr3 10589571 10590766 -149009017 + L1Md_F2 LINE L1 4385 5585 -298 1 665 8165 41 2 3 chr3 10590767 10591753 -149008030 + L1Md_F2 LINE L1 5587 6571 -11 1 665 8431 112 30 3 chr3 10591753 10593578 -149006205 + Lx3A LINE L1 5100 6975 -6 1 665 360 24 0 0 chr3 10593632 10593674 -149006109 + L1Md_A LINE L1 5545 5586 -297 1 665 8821 15 0 0 chr3 10593674 10594670 -149005113 + L1Md_A LINE L1 5587 6582 0 1 665 235 224 0 0 chr3 10594670 10594685 -149005098 + L1_Mur1 LINE L1 5590 5604 -282 1 665 23 33 0 0 chr3 10594740 10594770 -149005013 + AT_rich Low_complexity Low_complexity 1 30 0 1 665 271 232 13 81 chr3 10594770 10594855 -149004928 - BC1_Mm scRNA scRNA 0 83 4 1 665 531 170 0 0 chr3 10594980 10595080 -149004703 + GA-rich Low_complexity Low_complexity 3 102 0 1 665 924 167 0 0 chr3 10595115 10595283 -149004500 + GA-rich Low_complexity Low_complexity 2 169 0 1 665 1236 246 32 13 chr3 10595413 10595792 -149003991 - L1_Mur3 LINE L1 -6392 1320 935 1 665 486 327 75 0 chr3 10595792 10595951 -149003832 - RMER2 LTR ERV1 0 567 397 1 665 996 101 72 124 chr3 10595951 10596201 -149003582 + Lx3A LINE L1 5833 6069 -912 1 665 431 244 159 22 chr3 10596199 10596337 -149003446 + Lx5 LINE L1 6207 6363 -687 1 665 1114 337 79 8 chr3 10596371 10596809 -149002974 + Lx5 LINE L1 6507 6970 -80 1 665 690 13 0 0 chr3 10596809 10596888 -149002895 + (GAGAA)n Simple_repeat Simple_repeat 1 79 0 1 665 1114 337 79 8 chr3 10596888 10596940 -149002843 + Lx5 LINE L1 6971 7031 -19 1 665 32965 71 8 7 chr3 10596972 10603350 -148996433 - L1Md_F3 LINE L1 -16 6568 197 1 665 2636 63 27 0 chr3 10603351 10603717 -148996066 - L1_Mur1 LINE L1 -777 5109 4734 1 665 3215 91 17 4 chr3 10603720 10604184 -148995599 - Lx3_Mus LINE L1 -1 7008 6539 1 665 3308 105 27 0 chr3 10604184 10604700 -148995083 + Lx3_Mus LINE L1 6013 6542 -467 1 665 13995 99 10 67 chr3 10604731 10607279 -148992504 - L1_Mur1 LINE L1 -1147 4739 2336 1 665 3128 132 9 97 chr3 10607268 10607938 -148991845 - L1VL4 LINE L1 -5313 989 379 1 665 1186 206 35 89 chr3 10607939 10608254 -148991529 + RLTR25A LTR ERVK 804 1101 -2 1 665 988 208 16 4 chr3 10608255 10608497 -148991286 + Lx5 LINE L1 4629 4873 -1007 1 665 841 112 10 93 chr3 10608497 10608753 -148991030 - MYSERV6-int LTR ERVK -970 7989 7813 1 665 1478 151 27 7 chr3 10608753 10609046 -148990737 + Lx5 LINE L1 4902 5200 -677 1 665 2612 183 127 39 chr3 10609046 10609778 -148990005 - RLTR13D2 LTR ERVK 0 1023 1 1 665 5606 228 30 13 chr3 10609778 10611599 -148988184 + Lx5 LINE L1 5195 7047 -3 1 665 4015 187 37 10 chr3 10611595 10612617 -148987166 + Lx6 LINE L1 4983 6032 -1428 1 665 222 37 0 0 chr3 10612621 10612648 -148987135 + (ATTG)n Simple_repeat Simple_repeat 2 28 0 1 665 2804 194 55 47 chr3 10612686 10613320 -148986463 + RLTR26 LTR ERVK 4 642 0 1 665 4744 233 26 40 chr3 10613337 10613586 -148986197 + Lx6 LINE L1 6050 6307 -1153 1 665 2370 161 7 12 chr3 10613586 10613995 -148985788 - MTB_Mm LTR MaLR 0 407 1 1 665 4744 233 26 40 chr3 10613995 10614919 -148984864 + Lx6 LINE L1 6308 7206 -254 1 665 1615 208 9 18 chr3 10614929 10615271 -148984512 - Lx7 LINE L1 -445 7251 6913 1 83 11197 111 34 7 chr3 10616186 10618591 -148981192 + MusHAL1 LINE L1 37 2513 -840 1 666 7590 66 2 1 chr3 10618581 10619602 -148980181 - L1Md_F2 LINE L1 -86 5797 4776 1 666 6317 55 0 1 chr3 10619602 10620380 -148979403 + L1Md_F2 LINE L1 5794 6570 -12 1 666 2353 99 38 0 chr3 10620380 10620773 -148979010 + MusHAL1 LINE L1 2496 2903 -450 1 666 24281 142 13 56 chr3 10620765 10625240 -148974543 + Lx LINE L1 1050 5305 -578 1 666 2889 101 35 14 chr3 10625240 10625674 -148974109 + L1_Mus3 LINE L1 6194 6636 -2 1 666 24281 135 14 28 chr3 10625674 10626500 -148973283 + Lx LINE L1 5306 6479 -521 1 666 341 281 10 30 chr3 10626501 10626600 -148973183 - B1F SINE Alu 0 149 53 1 666 2538 197 41 53 chr3 10626633 10627213 -148972570 - RMER15 LTR ERVL -2 573 1 1 666 228 261 0 0 chr3 10628832 10628897 -148970886 + MT2A LTR ERVL 3 67 -466 1 666 816 301 84 4 chr3 10628862 10629112 -148970671 + MTD LTR MaLR 150 419 0 1 666 216 0 0 0 chr3 10629165 10629189 -148970594 + (TG)n Simple_repeat Simple_repeat 1 24 0 1 666 363 303 182 33 chr3 10629240 10629421 -148970362 - B4A SINE B4 -83 209 2 1 666 288 306 147 40 chr3 10629723 10629873 -148969910 - MIRb SINE MIR -82 186 21 1 666 399 41 0 0 chr3 10631007 10631056 -148968727 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 666 5802 111 42 42 chr3 10631179 10631901 -148967882 - L1_Mus4 LINE L1 -6 6630 5904 1 666 960 216 92 114 chr3 10631901 10631995 -148967788 - RLTR9C LTR ERVK 0 393 302 1 666 549 0 0 0 chr3 10631995 10632056 -148967727 + (GA)n Simple_repeat Simple_repeat 2 62 0 1 666 960 216 92 114 chr3 10632056 10632363 -148967420 - RLTR9C LTR ERVK -92 301 2 1 666 5802 135 39 28 chr3 10632363 10632965 -148966818 - L1_Mus4 LINE L1 -733 5903 5260 1 666 3184 95 5 2 chr3 10632965 10633407 -148966376 - L1_Mus3 LINE L1 -2 6636 6194 1 666 2378 184 21 111 chr3 10633407 10633963 -148965820 - L1_Mus4 LINE L1 -585 5298 4829 1 666 1014 69 23 0 chr3 10633963 10634093 -148965690 + B1_Mm SINE Alu 3 135 -12 1 666 2378 157 16 102 chr3 10634093 10634227 -148965556 - L1_Mus4 LINE L1 -1007 4876 4781 1 666 1300 150 4 4 chr3 10634227 10634455 -148965328 + Lx LINE L1 6425 6652 -2 1 666 186 416 0 0 chr3 10635394 10635483 -148964300 - L3 LINE CR1 -356 4133 4045 1 666 466 298 16 0 chr3 10636101 10636222 -148963561 + RMER15 LTR ERVL 296 418 -157 1 666 414 53 0 0 chr3 10636438 10636495 -148963288 + (CA)n Simple_repeat Simple_repeat 1 57 0 1 666 433 289 37 16 chr3 10636516 10636706 -148963077 - L1MA5A LINE L1 -379 5918 5725 1 666 571 275 69 12 chr3 10637837 10638010 -148961773 - MER2 DNA MER2_type -157 188 6 1 666 1144 68 0 0 chr3 10638055 10638202 -148961581 - B1_Mm SINE Alu 0 147 1 1 666 313 360 54 24 chr3 10638236 10638404 -148961379 + ORR1E LTR MaLR 19 191 -168 1 666 297 0 0 0 chr3 10638405 10638438 -148961345 + (T)n Simple_repeat Simple_repeat 1 33 0 1 666 6702 86 23 3 chr3 10638515 10639587 -148960196 - L1Md_F2 LINE L1 0 6582 5453 1 666 3657 97 2 4 chr3 10639580 10640106 -148959677 - L1_Mus2 LINE L1 -36 6530 6006 1 666 2465 167 80 94 chr3 10640101 10641489 -148958294 - L1Md_F LINE L1 -2314 1503 123 1 666 287 342 188 52 chr3 10641597 10641905 -148957878 - L2 LINE L2 -343 3076 2727 1 666 549 345 93 4 chr3 10641919 10642166 -148957617 + B4A SINE B4 6 274 -18 1 666 255 337 0 59 chr3 10642144 10642229 -148957554 + B3 SINE B2 123 202 -14 1 666 294 125 0 0 chr3 10642234 10642282 -148957501 + (CA)n Simple_repeat Simple_repeat 1 48 0 1 666 387 336 75 48 chr3 10642317 10642651 -148957132 - L2 LINE L2 -705 2714 2372 1 666 378 293 44 2 chr3 10643224 10643363 -148956420 + MLT1A LTR MaLR 8 152 -213 1 666 7529 75 4 4 chr3 10643368 10644536 -148955247 + L1_Mus3 LINE L1 5471 6638 0 1 666 345 75 0 0 chr3 10644587 10644640 -148955143 + (A)n Simple_repeat Simple_repeat 1 53 0 1 666 261 306 213 0 chr3 10644662 10644803 -148954980 + MLT1A LTR MaLR 213 401 -7 1 666 228 35 0 0 chr3 10644955 10644984 -148954799 + (TTTTTG)n Simple_repeat Simple_repeat 5 33 0 1 666 951 247 190 17 chr3 10645979 10646337 -148953446 - Lx8 LINE L1 -172 7301 6882 1 666 191 347 107 0 chr3 10647220 10647295 -148952488 - L4 LINE RTE -861 1168 1086 1 666 229 125 0 35 chr3 10647921 10647979 -148951804 + GA-rich Low_complexity Low_complexity 2 57 0 1 666 716 290 69 108 chr3 10648107 10648525 -148951258 - RLTR23 LTR ERV1 -23 407 6 1 666 23 54 0 0 chr3 10649122 10649159 -148950624 + AT_rich Low_complexity Low_complexity 1 37 0 1 666 28522 104 7 4 chr3 10649159 10651503 -148948280 - L1_Mus1 LINE L1 0 6567 4210 1 666 261 0 0 0 chr3 10651503 10651532 -148948251 + (CA)n Simple_repeat Simple_repeat 2 30 0 1 666 28522 157 25 43 chr3 10651532 10655733 -148944050 - L1_Mus1 LINE L1 -1674 4209 217 1 666 460 274 53 27 chr3 10656089 10656314 -148943469 + CYRA11_Mm Unknown Y-chromosome 154 384 -233 1 666 1104 176 83 0 chr3 10656112 10656316 -148943467 - URR1A DNA MER1_type -5 221 1 1 666 3212 76 2 5 chr3 10656869 10657291 -148942492 - L1_Mus2 LINE L1 -1 6565 6145 1 666 7845 132 11 134 chr3 10657295 10659179 -148940604 - L1_Mm LINE L1 -2091 3792 2142 1 666 2651 151 19 8 chr3 10659154 10659627 -148940156 - L1VL1 LINE L1 -5669 753 276 1 666 21 57 0 0 chr3 10660419 10660454 -148939329 + AT_rich Low_complexity Low_complexity 1 35 0 1 666 290 182 15 0 chr3 10660671 10660737 -148939046 + (TCTG)n Simple_repeat Simple_repeat 2 68 0 1 666 296 218 235 22 chr3 10661207 10661390 -148938393 + MER33 DNA MER1_type 53 274 -50 1 666 4136 23 4 2 chr3 10661674 10662157 -148937626 - L1Md_F2 LINE L1 0 6582 6099 1 666 21 0 0 0 chr3 10663197 10663218 -148936565 + AT_rich Low_complexity Low_complexity 1 21 0 1 666 1184 256 3 65 chr3 10664117 10664409 -148935374 - B4A SINE B4 -13 279 6 1 666 468 0 0 0 chr3 10664412 10664464 -148935319 + (CA)n Simple_repeat Simple_repeat 1 52 0 1 666 261 0 0 0 chr3 10664586 10664615 -148935168 + (TTCTC)n Simple_repeat Simple_repeat 1 29 0 1 666 1389 61 0 0 chr3 10664618 10664798 -148934985 + (TCTCC)n Simple_repeat Simple_repeat 1 180 0 1 666 345 218 0 0 chr3 10664801 10664879 -148934904 + CT-rich Low_complexity Low_complexity 3 80 0 1 666 432 0 0 0 chr3 10664879 10664927 -148934856 + (TC)n Simple_repeat Simple_repeat 1 48 0 1 666 184 258 0 57 chr3 10665403 10665473 -148934310 - MER5A DNA MER1_type -31 158 93 1 666 963 79 0 0 chr3 10666038 10666164 -148933619 + B1_Mus1 SINE Alu 8 133 -15 1 666 329 0 0 24 chr3 10666164 10666206 -148933577 + (CAAA)n Simple_repeat Simple_repeat 3 43 0 1 666 673 305 23 6 chr3 10666836 10667011 -148932772 + B3 SINE B2 2 179 -37 1 666 1782 74 4 0 chr3 10668782 10669013 -148930770 + L1_Mus2 LINE L1 6335 6566 0 1 666 234 108 0 0 chr3 10669503 10669540 -148930243 - Lx2 LINE L1 -729 6268 6232 2 666 4228 120 61 3 chr3 10669541 10670209 -148929574 + Lx2 LINE L1 6289 6995 -2 2 666 258 186 56 14 chr3 10670811 10670882 -148928901 + (TG)n Simple_repeat Simple_repeat 1 74 0 2 666 542 328 46 100 chr3 10670889 10671207 -148928576 - B4 SINE B4 0 292 1 2 666 201 94 0 0 chr3 10672554 10672586 -148927197 + (CAAT)n Simple_repeat Simple_repeat 2 33 0 2 666 383 301 58 52 chr3 10672819 10672973 -148926810 + MLT1A0 LTR MaLR 10 164 -201 2 666 236 267 178 0 chr3 10672976 10673066 -148926717 + PB1D10 SINE Alu 12 117 0 2 666 381 43 0 0 chr3 10673135 10673182 -148926601 + (TAAAA)n Simple_repeat Simple_repeat 5 51 0 2 666 373 338 57 25 chr3 10673191 10673349 -148926434 + MLT1A0 LTR MaLR 181 343 -22 2 666 277 348 0 0 chr3 10674374 10674463 -148925320 - MLT1I LTR MaLR -2 409 321 2 666 388 290 84 0 chr3 10674781 10674888 -148924895 - MLT1A1 LTR MaLR -25 383 268 2 666 1999 190 50 0 chr3 10675110 10675474 -148924309 - ORR1C2 LTR MaLR 0 384 3 2 666 30 45 0 0 chr3 10675904 10675948 -148923835 + AT_rich Low_complexity Low_complexity 1 44 0 2 666 3204 30 0 0 chr3 10676258 10676659 -148923124 - L1Md_T LINE L1 -1232 4651 4251 2 666 7811 18 0 0 chr3 10676656 10677595 -148922188 + L1Md_T LINE L1 4648 5586 -297 2 666 8563 29 0 0 chr3 10677595 10678591 -148921192 + L1Md_T LINE L1 5587 6582 0 2 666 297 314 54 77 chr3 10678869 10679090 -148920693 + RMER15 LTR ERVL 185 400 -175 2 666 397 286 84 42 chr3 10679097 10679312 -148920471 + RMER15 LTR ERVL 314 537 -38 2 666 279 0 0 0 chr3 10679986 10680017 -148919766 + (TTTTA)n Simple_repeat Simple_repeat 2 32 0 2 666 6201 57 13 0 chr3 10680094 10680871 -148918912 - L1_Mus1 LINE L1 -14 6553 5767 2 666 300 70 0 0 chr3 10682625 10682668 -148917115 + (TG)n Simple_repeat Simple_repeat 2 44 0 2 666 302 251 135 16 chr3 10683072 10683170 -148916613 - MTD LTR MaLR -17 404 276 2 666 469 325 64 40 chr3 10683183 10683385 -148916398 - MTD LTR MaLR -208 211 5 2 666 186 43 0 0 chr3 10685385 10685408 -148914375 + (TAAAAA)n Simple_repeat Simple_repeat 5 27 0 2 666 384 59 0 0 chr3 10687832 10687883 -148911900 + (TG)n Simple_repeat Simple_repeat 2 52 0 2 666 928 295 63 97 chr3 10688567 10689546 -148910237 + L1MA6 LINE L1 5352 6297 -3 2 666 379 291 94 0 chr3 10689764 10689891 -148909892 - B1F SINE Alu -1 148 10 2 666 25 0 0 0 chr3 10690511 10690536 -148909247 + AT_rich Low_complexity Low_complexity 1 25 0 2 666 249 180 33 0 chr3 10690791 10690852 -148908931 + (TA)n Simple_repeat Simple_repeat 2 64 0 2 666 1489 260 56 32 chr3 10690875 10691284 -148908499 + MTD LTR MaLR 1 419 0 2 666 590 269 78 0 chr3 10691788 10692045 -148907738 - Lx9 LINE L1 -1 7643 7367 2 666 359 194 48 76 chr3 10692207 10692352 -148907431 + Lx4B LINE L1 6918 7058 0 2 666 25 31 0 0 chr3 10692352 10692384 -148907399 + AT_rich Low_complexity Low_complexity 1 32 0 2 666 330 273 72 32 chr3 10692452 10692577 -148907206 - Charlie12 DNA MER1_type -2714 159 30 2 666 411 56 0 0 chr3 10692911 10692965 -148906818 + (TG)n Simple_repeat Simple_repeat 1 54 0 2 666 10404 55 13 2 chr3 10693679 10695779 -148904004 - L1Md_F2 LINE L1 0 6582 4459 2 666 23 33 0 0 chr3 10703300 10703330 -148896453 + AT_rich Low_complexity Low_complexity 1 30 0 2 666 185 366 83 21 chr3 10703664 10703809 -148895974 + MIRb SINE MIR 19 172 -96 2 666 324 195 110 0 chr3 10704412 10704494 -148895289 - PB1D10 SINE Alu 0 117 27 2 666 519 264 76 19 chr3 10704686 10704844 -148894939 - B4A SINE B4 -118 174 8 2 666 2999 164 43 45 chr3 10705016 10705116 -148894667 - Lx5 LINE L1 -498 6552 6452 2 666 5410 59 3 10 chr3 10705116 10705817 -148893966 + L1Md_F2 LINE L1 5873 6568 -14 2 666 2999 164 43 45 chr3 10705817 10706388 -148893395 - Lx5 LINE L1 -599 6451 5882 2 666 564 194 52 0 chr3 10706820 10706954 -148892829 - Lx6 LINE L1 0 7460 7320 2 666 187 273 18 18 chr3 10707254 10707310 -148892473 - MIRc SINE MIR -50 218 163 2 666 308 274 9 70 chr3 10707530 10707644 -148892139 + Lx7 LINE L1 7087 7193 -503 2 666 287 85 21 0 chr3 10708839 10708886 -148890897 + (TA)n Simple_repeat Simple_repeat 2 49 0 2 666 834 169 64 35 chr3 10708886 10709058 -148890725 - B2_Mm2 SINE B2 -18 177 1 2 666 351 0 0 0 chr3 10709714 10709753 -148890030 + (TG)n Simple_repeat Simple_repeat 1 39 0 2 666 905 239 82 21 chr3 10710417 10710771 -148889012 - MTD LTR MaLR 0 419 22 2 666 237 83 0 0 chr3 10710771 10710807 -148888976 + (CAGA)n Simple_repeat Simple_repeat 3 38 0 2 666 480 35 0 0 chr3 10711346 10711404 -148888379 + (TCTA)n Simple_repeat Simple_repeat 1 58 0 2 666 313 321 136 6 chr3 10712297 10712463 -148887320 + MIRb SINE MIR 48 228 -34 2 666 206 200 30 61 chr3 10712997 10713162 -148886621 + (ATGGTG)n Simple_repeat Simple_repeat 4 163 0 2 666 206 200 30 61 chr3 10713183 10713348 -148886435 + (ATGGTG)n Simple_repeat Simple_repeat 4 163 0 2 666 220 194 30 61 chr3 10713955 10714120 -148885663 + (ATGGTG)n Simple_repeat Simple_repeat 4 163 0 2 666 220 194 30 61 chr3 10714327 10714492 -148885291 + (ATGGTG)n Simple_repeat Simple_repeat 4 163 0 2 666 220 194 30 61 chr3 10714513 10714678 -148885105 + (ATGGTG)n Simple_repeat Simple_repeat 4 163 0 2 666 206 200 30 61 chr3 10714822 10714987 -148884796 + (ATGGTG)n Simple_repeat Simple_repeat 4 163 0 2 666 220 194 30 61 chr3 10715039 10715204 -148884579 + (ATGGTG)n Simple_repeat Simple_repeat 4 163 0 2 666 347 279 28 41 chr3 10715746 10715980 -148883803 - Charlie1 DNA MER1_type -7 2774 2438 2 666 483 265 42 42 chr3 10717789 10717931 -148881852 - B1_Mur1 SINE Alu -7 142 1 2 666 412 260 58 29 chr3 10718992 10719198 -148880585 - L1MA6 LINE L1 -6 6294 6083 2 666 294 321 120 40 chr3 10719211 10719386 -148880397 + MLT1B LTR MaLR 178 366 -24 2 666 17178 165 65 34 chr3 10720377 10726343 -148873440 + Lx LINE L1 583 6648 -6 2 666 226 219 0 0 chr3 10726722 10726763 -148873020 + polypyrimidine Low_complexity Low_complexity 2 42 0 2 666 1254 95 0 0 chr3 10727998 10728177 -148871606 + (GAGAA)n Simple_repeat Simple_repeat 2 180 0 2 666 981 151 46 10 chr3 10728517 10728711 -148871072 + Lx5 LINE L1 6844 7044 -6 2 666 1405 39 67 6 chr3 10730309 10730489 -148869294 - B2_Mm1a SINE B2 -1 192 2 2 666 857 296 84 0 chr3 10730611 10730861 -148868922 + B4A SINE B4 14 284 -8 2 666 869 104 7 0 chr3 10730894 10731029 -148868754 + (CA)n Simple_repeat Simple_repeat 1 136 0 2 666 6941 133 35 44 chr3 10731227 10732533 -148867250 - Lx2 LINE L1 -3 6994 5702 2 666 783 152 0 0 chr3 10733913 10734058 -148865725 + (TA)n Simple_repeat Simple_repeat 1 145 0 2 666 282 237 121 8 chr3 10734975 10735107 -148864676 - L1MDb LINE L1 -5179 1230 1084 2 666 408 332 107 25 chr3 10735172 10735490 -148864293 - L1MDb LINE L1 -5405 1004 661 2 666 201 355 47 55 chr3 10735995 10736123 -148863660 + MIRb SINE MIR 25 151 -117 2 666 252 246 0 0 chr3 10736231 10736300 -148863483 + Lx6 LINE L1 224 292 -7436 2 666 3606 214 72 111 chr3 10736321 10738614 -148861169 + Lx6 LINE L1 859 2968 -2912 2 666 6824 101 4 32 chr3 10738619 10739696 -148860087 + L1_Mus4 LINE L1 5587 6633 -3 2 666 11678 185 43 21 chr3 10739694 10742427 -148857356 + Lx6 LINE L1 2960 5755 -125 2 666 2814 59 146 124 chr3 10742427 10742928 -148856855 + RLTR1B LTR ERV1 1 512 0 2 666 11678 185 43 21 chr3 10742928 10743020 -148856763 + Lx6 LINE L1 5756 5848 -32 2 666 908 135 31 19 chr3 10743021 10743180 -148856603 - RLTR13D4 LTR ERVK 0 1033 873 2 666 4383 59 11 14 chr3 10743401 10743967 -148855816 - LTRIS2 LTR ERV1 0 564 1 2 666 339 271 0 33 chr3 10743967 10744089 -148855694 - MuRRS-int LTR ERV1 0 4690 4573 2 666 645 14 0 0 chr3 10744089 10744163 -148855620 + (TA)n Simple_repeat Simple_repeat 2 75 0 2 666 7080 49 1 0 chr3 10744168 10745080 -148854703 - L1Md_F3 LINE L1 -22 6562 5650 2 666 597 174 0 0 chr3 10745084 10745193 -148854590 - RLTR1B-int LTR ERV1 -167 4896 4788 2 666 1240 246 48 21 chr3 10745185 10745800 -148853983 - RLTR1B-int LTR ERV1 -1235 3828 3632 2 666 7169 97 14 28 chr3 10745799 10747370 -148852413 - RLTR1B-int LTR ERV1 -1560 3503 1172 2 666 387 0 0 0 chr3 10747370 10747413 -148852370 + (TC)n Simple_repeat Simple_repeat 1 43 0 2 666 957 210 142 24 chr3 10747413 10747605 -148852178 - MuRRS4-int LTR ERV1 -5737 1819 1513 2 83 3435 115 48 23 chr3 10747633 10748318 -148851465 - RLTR13D4 LTR ERVK -113 920 1 2 667 2326 261 60 11 chr3 10748318 10748951 -148850832 + Lx6 LINE L1 5846 6501 -959 2 667 446 0 19 0 chr3 10748951 10749005 -148850778 + (GA)n Simple_repeat Simple_repeat 2 56 0 2 667 2326 261 60 11 chr3 10749005 10749040 -148850743 + Lx6 LINE L1 6502 6547 -913 2 667 2350 246 142 15 chr3 10749008 10749736 -148850047 + Lx6 LINE L1 6299 7347 -113 2 667 429 303 68 63 chr3 10749768 10749958 -148849825 - MER74A LTR ERVL -354 204 14 2 667 4753 186 19 14 chr3 10750367 10751479 -148848304 - L1_Mur3 LINE L1 -1659 4221 3105 2 667 531 241 43 0 chr3 10751472 10751588 -148848195 + Lx5 LINE L1 6209 6329 -721 2 667 31 0 0 0 chr3 10751803 10751834 -148847949 + AT_rich Low_complexity Low_complexity 1 31 0 2 667 189 0 0 0 chr3 10753544 10753565 -148846218 + (GAAA)n Simple_repeat Simple_repeat 2 22 0 2 667 7164 184 15 64 chr3 10754437 10757237 -148842546 - L1_Mur3 LINE L1 -1860 4023 1534 2 667 3247 56 5 0 chr3 10757237 10757631 -148842152 - MTA_Mm LTR MaLR 0 396 1 2 667 7291 76 11 114 chr3 10757631 10758854 -148840929 - MTA_Mm-int LTR MaLR 0 1098 1 2 667 3171 63 5 0 chr3 10758854 10759248 -148840535 - MTA_Mm LTR MaLR 0 396 1 2 667 6455 221 18 118 chr3 10759248 10759501 -148840282 - L1_Mur3 LINE L1 -4347 1533 1271 2 667 5167 136 15 77 chr3 10759504 10760466 -148839317 + RLTR13D6 LTR ERVK 1 902 0 2 667 4426 209 58 12 chr3 10760472 10761617 -148838166 - L1_Mur3 LINE L1 -6463 1265 68 2 667 632 228 120 0 chr3 10761898 10762065 -148837718 + URR1B DNA MER1_type 8 194 -31 2 667 312 29 101 0 chr3 10762309 10762378 -148837405 + (TCTA)n Simple_repeat Simple_repeat 2 77 0 2 667 454 284 11 69 chr3 10762678 10762852 -148836931 - RNLTR23 LTR ERVK 0 642 479 2 667 684 245 11 11 chr3 10763573 10763763 -148836020 - RNERVK23-int LTR ERVK -402 7815 7626 2 667 7866 253 2 1 chr3 10763856 10765754 -148834029 - RNERVK23-int LTR ERVK -2595 5622 3723 2 667 1200 55 0 7 chr3 10766639 10766787 -148832996 + B1_Mus2 SINE Alu 1 147 0 2 667 793 257 0 9 chr3 10766803 10767019 -148832764 - RNERVK23-int LTR ERVK -7758 459 246 2 667 594 241 12 64 chr3 10767231 10767404 -148832379 - RNLTR23 LTR ERVK 0 642 479 2 667 3763 98 39 2 chr3 10768076 10768610 -148831173 + L1_Mus4 LINE L1 6080 6633 -3 2 667 1830 138 58 0 chr3 10769889 10770200 -148829583 - ORR1A4 LTR MaLR 0 329 1 2 667 207 0 0 0 chr3 10772998 10773021 -148826762 + (TTG)n Simple_repeat Simple_repeat 2 24 0 2 667 482 327 161 26 chr3 10773499 10773920 -148825863 - MLT1H2 LTR MaLR -11 478 1 2 667 7555 48 7 9 chr3 10774467 10775484 -148824299 + L1_Mus1 LINE L1 5553 6567 0 2 667 512 288 70 12 chr3 10777702 10777874 -148821909 + MER31A LTR ERV1 288 469 -16 2 667 21 36 0 0 chr3 10778336 10778364 -148821419 + AT_rich Low_complexity Low_complexity 1 28 0 2 667 559 263 94 10 chr3 10779968 10780160 -148819623 + B3 SINE B2 2 209 -7 2 667 440 338 73 29 chr3 10781206 10781480 -148818303 - L1M4 LINE L1 -1384 4762 4477 3 667 218 234 15 30 chr3 10781480 10781546 -148818237 + (TCTCTG)n Simple_repeat Simple_repeat 4 68 0 3 667 606 256 21 90 chr3 10781659 10781848 -148817935 - B4A SINE B4 -116 176 1 3 667 3889 159 94 43 chr3 10781895 10782738 -148817045 - RLTR13B1 LTR ERVK 0 893 8 3 667 627 292 144 0 chr3 10782812 10783076 -148816707 + MER2 DNA MER2_type 8 309 -36 3 667 500 262 41 0 chr3 10783662 10783784 -148815999 + ID_B1 SINE B4 98 224 0 3 667 354 301 88 5 chr3 10785666 10785883 -148813900 - L1MEf LINE L1 -1201 5805 5571 3 667 262 229 81 30 chr3 10785903 10786002 -148813781 - L1MEf LINE L1 -1487 5519 5416 3 667 393 255 69 24 chr3 10786092 10786286 -148813497 - L1MEf LINE L1 -1760 5246 5038 3 667 233 248 222 13 chr3 10786284 10786509 -148813274 - L1MEf LINE L1 -4012 3322 3051 3 667 242 341 0 0 chr3 10786638 10786729 -148813054 - L1MEf LINE L1 -4559 2775 2685 3 667 198 0 0 0 chr3 10786867 10786889 -148812894 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 3 667 2813 324 53 23 chr3 10786933 10788072 -148811711 - Lx8 LINE L1 -172 7301 6129 3 667 294 222 60 10 chr3 10788103 10788203 -148811580 - L1MEf LINE L1 -4657 2677 2573 3 667 268 103 0 0 chr3 10788374 10788413 -148811370 - B3A SINE B2 -159 39 1 3 667 587 338 79 47 chr3 10788471 10788750 -148811033 - B4A SINE B4 -3 289 2 3 667 551 266 152 39 chr3 10788826 10789332 -148810451 - L1MEf LINE L1 -4731 2371 1689 3 667 284 235 0 0 chr3 10789808 10789866 -148809917 - RLTR20B3 LTR ERVK -56 521 451 3 667 32410 87 1 14 chr3 10789866 10795565 -148804218 + L1Md_F2 LINE L1 98 5585 -298 3 667 7985 50 1 0 chr3 10795566 10796547 -148803236 + L1Md_F2 LINE L1 5587 6568 -14 3 667 1248 263 68 42 chr3 10796556 10797012 -148802771 - RLTR20B3 LTR ERVK -87 490 23 3 667 347 379 32 25 chr3 10797043 10797200 -148802583 - B4 SINE B4 -133 159 2 3 667 247 291 80 18 chr3 10797208 10797320 -148802463 - L1MA4 LINE L1 -362 5938 5820 3 667 1035 84 0 0 chr3 10797428 10797571 -148802212 + (TTTC)n Simple_repeat Simple_repeat 2 144 0 3 667 236 185 0 0 chr3 10797688 10797742 -148802041 + L1_Rod LINE L1 5169 5222 -625 3 667 320 252 65 52 chr3 10797755 10797910 -148801873 + L1M2 LINE L1 5451 5607 -693 3 667 851 293 36 51 chr3 10798141 10798472 -148801311 - Lx8 LINE L1 -671 6802 6477 3 667 313 245 91 10 chr3 10798562 10798661 -148801122 + MLT1E2 LTR MaLR 1 107 -398 3 667 403 333 29 29 chr3 10798729 10798899 -148800884 + MLT1E2 LTR MaLR 229 398 -229 3 667 203 195 0 24 chr3 10798912 10798954 -148800829 + (TATATG)n Simple_repeat Simple_repeat 5 45 0 3 667 1631 292 54 26 chr3 10800608 10801146 -148798637 + Lx6 LINE L1 6908 7460 0 3 667 2992 187 41 2 chr3 10801577 10802162 -148797621 + L1_Mur2 LINE L1 4691 5298 -579 3 667 8016 92 15 0 chr3 10802164 10804159 -148795624 + L1VL4 LINE L1 1 2024 -1535 3 667 40996 7 1 1 chr3 10804173 10810940 -148788843 - L1Md_A LINE L1 0 6582 1 3 667 8582 107 68 23 chr3 10810942 10812349 -148787434 + L1VL4 LINE L1 2009 3507 -52 3 667 938 130 14 14 chr3 10812349 10812497 -148787286 + B1_Mus1 SINE Alu 1 148 0 3 667 8582 107 68 23 chr3 10812497 10812569 -148787214 + L1VL4 LINE L1 3508 3555 -4 3 667 751 276 101 26 chr3 10813000 10813268 -148786515 + RMER5 LTR ERV1 69 356 -178 3 667 549 0 0 0 chr3 10813341 10813402 -148786381 + (TTC)n Simple_repeat Simple_repeat 1 61 0 3 667 1410 56 0 0 chr3 10813405 10813585 -148786198 + (TTCTCC)n Simple_repeat Simple_repeat 1 180 0 3 667 480 211 14 7 chr3 10813587 10813730 -148786053 + CT-rich Low_complexity Low_complexity 2 145 0 3 667 4539 52 0 0 chr3 10813732 10814285 -148785498 - L1_Mus1 LINE L1 0 6567 6015 3 667 3708 137 56 13 chr3 10814284 10814911 -148784872 + Lx LINE L1 5994 6647 -7 3 667 261 0 0 0 chr3 10815007 10815036 -148784747 + (CA)n Simple_repeat Simple_repeat 1 29 0 3 667 21 0 0 0 chr3 10815059 10815080 -148784703 + AT_rich Low_complexity Low_complexity 1 21 0 3 667 198 0 0 0 chr3 10815102 10815124 -148784659 + (A)n Simple_repeat Simple_repeat 1 22 0 3 667 369 0 0 0 chr3 10815171 10815212 -148784571 + (TG)n Simple_repeat Simple_repeat 2 42 0 3 667 1000 360 71 2 chr3 10816922 10817329 -148782454 - MTE-int LTR MaLR -39 1541 1107 3 667 291 350 88 67 chr3 10817579 10817864 -148781919 + MLT1A0 LTR MaLR 42 332 -33 3 667 353 354 77 6 chr3 10818056 10818091 -148781692 - MLT2B3 LTR ERVL -2 552 518 3 667 1031 8 16 0 chr3 10818091 10818214 -148781569 + (TATATG)n Simple_repeat Simple_repeat 4 128 0 3 667 353 280 182 34 chr3 10818214 10818557 -148781226 - MLT2B3 LTR ERVL -33 523 61 3 667 223 268 79 86 chr3 10818711 10818850 -148780933 + L2a LINE L2 3287 3424 -2 3 667 725 261 67 67 chr3 10819575 10819768 -148780015 - MTD LTR MaLR -201 218 26 3 667 342 0 0 0 chr3 10820274 10820312 -148779471 + (TTA)n Simple_repeat Simple_repeat 2 39 0 3 667 799 276 64 53 chr3 10820387 10820762 -148779021 - MTEb LTR MaLR 0 379 1 3 667 978 318 82 15 chr3 10821421 10821826 -148777957 + Lx8 LINE L1 7042 7473 0 3 667 712 193 59 0 chr3 10823607 10823742 -148776041 + B1_Mur4 SINE Alu 1 143 -7 3 667 378 0 0 0 chr3 10823750 10823792 -148775991 + (CA)n Simple_repeat Simple_repeat 2 43 0 3 667 1055 83 21 0 chr3 10824526 10824671 -148775112 + B1_Mus1 SINE Alu 1 148 0 3 667 255 31 0 0 chr3 10824671 10824703 -148775080 + (A)n Simple_repeat Simple_repeat 1 32 0 3 667 362 189 9 0 chr3 10825302 10825408 -148774375 + (CA)n Simple_repeat Simple_repeat 2 108 0 3 667 1040 30 8 0 chr3 10825872 10826004 -148773779 + (GA)n Simple_repeat Simple_repeat 2 134 0 3 667 485 239 196 0 chr3 10826078 10826216 -148773567 - ORR1B2 LTR MaLR -20 347 183 3 667 538 152 13 2 chr3 10826217 10826313 -148773470 - Lx4B LINE L1 -1124 5934 5839 3 667 369 0 0 0 chr3 10826313 10826354 -148773429 + (TTA)n Simple_repeat Simple_repeat 1 41 0 3 667 399 226 34 34 chr3 10826354 10826377 -148773406 - Lx4B LINE L1 -1622 5838 5813 3 667 1199 218 21 42 chr3 10826416 10826703 -148773080 + Lx4B LINE L1 6068 6348 -710 3 667 3988 36 2 0 chr3 10826706 10827181 -148772602 - L1Md_T LINE L1 0 6582 6107 3 667 3598 174 63 12 chr3 10827181 10827863 -148771920 + Lx4B LINE L1 6338 7054 -4 3 667 1473 201 10 40 chr3 10827888 10828120 -148771663 + ORR1A4 LTR MaLR 43 275 -54 3 667 1135 61 0 0 chr3 10828120 10828268 -148771515 + L1_Mus1 LINE L1 6419 6566 -1 3 667 378 30 14 57 chr3 10828274 10828344 -148771439 + (CAAA)n Simple_repeat Simple_repeat 2 68 0 3 667 1473 201 10 40 chr3 10828344 10828400 -148771383 + ORR1A4 LTR MaLR 276 329 0 3 667 9340 148 62 65 chr3 10828400 10830330 -148769453 + ORR1A4-int LTR MaLR 1 1924 -39 3 667 1145 82 0 0 chr3 10830497 10830644 -148769139 - B1_Mus2 SINE Alu 0 147 1 3 667 381 319 109 19 chr3 10830653 10831020 -148768763 - L1MA5 LINE L1 -6 6294 5895 3 667 432 294 18 0 chr3 10831936 10832045 -148767738 - PB1D7 SINE Alu -6 114 4 3 667 250 256 165 13 chr3 10831987 10832066 -148767717 - B4A SINE B4 -146 146 56 3 667 22 56 0 0 chr3 10832353 10832389 -148767394 + AT_rich Low_complexity Low_complexity 1 36 0 3 667 404 77 0 15 chr3 10832400 10832466 -148767317 + (TG)n Simple_repeat Simple_repeat 2 66 0 3 667 27 87 0 0 chr3 10832918 10832987 -148766796 + AT_rich Low_complexity Low_complexity 1 69 0 3 667 1993 145 12 3 chr3 10834030 10834356 -148765427 - ORR1A4 LTR MaLR 0 329 1 3 667 246 316 79 43 chr3 10834914 10835032 -148764751 - MLT2B3 LTR ERVL -343 211 88 3 667 480 35 0 0 chr3 10835032 10835090 -148764693 + (TC)n Simple_repeat Simple_repeat 1 58 0 3 667 246 316 79 43 chr3 10835090 10835110 -148764673 - MLT2B3 LTR ERVL -467 87 68 3 667 673 286 23 46 chr3 10835458 10835674 -148764109 - B3 SINE B2 -5 211 1 3 667 29 50 0 16 chr3 10836545 10836556 -148763227 + AT_rich Low_complexity Low_complexity 1 11 0 3 667 3933 164 40 5 chr3 10836556 10837224 -148762559 - RLTR17 LTR ERVK 0 692 1 3 667 29 50 0 16 chr3 10837224 10837273 -148762510 + AT_rich Low_complexity Low_complexity 1 49 0 3 667 424 196 20 0 chr3 10837296 10837398 -148762385 - Lx9 LINE L1 -1 7643 7540 3 667 279 151 274 0 chr3 10837398 10837471 -148762312 - Lx9 LINE L1 -193 7451 7359 3 667 729 230 22 71 chr3 10838856 10839068 -148760715 - B3A SINE B2 -5 211 3 3 667 1090 93 0 0 chr3 10839103 10839243 -148760540 + B1_Mus1 SINE Alu 2 141 -7 3 667 243 0 0 0 chr3 10839246 10839273 -148760510 + (CAAAA)n Simple_repeat Simple_repeat 4 30 0 3 667 435 62 62 0 chr3 10839276 10839373 -148760410 + (CAAA)n Simple_repeat Simple_repeat 2 104 0 3 667 2376 147 2 7 chr3 10839406 10839837 -148759946 - L1_Mur2 LINE L1 -523 5354 4926 3 667 559 140 0 152 chr3 10839826 10840003 -148759780 + L1_Mus3 LINE L1 6489 6638 0 3 667 574 303 69 26 chr3 10840046 10840331 -148759452 - L1MA9 LINE L1 -56 6256 5962 3 667 315 0 0 0 chr3 10840331 10840366 -148759417 + (TG)n Simple_repeat Simple_repeat 2 36 0 3 667 574 303 69 26 chr3 10840366 10840503 -148759280 - L1MA9 LINE L1 -351 5961 5816 3 667 543 136 0 0 chr3 10840512 10840622 -148759161 + (TG)n Simple_repeat Simple_repeat 1 110 0 3 667 38829 15 2 6 chr3 10840629 10846830 -148752953 - L1Md_A LINE L1 0 6582 414 3 667 280 293 60 20 chr3 10846834 10846984 -148752799 - L1MA9 LINE L1 -523 5777 5622 3 667 237 289 124 20 chr3 10847060 10847261 -148752522 + L1M3 LINE L1 4809 5030 -1110 3 667 216 0 0 0 chr3 10847272 10847296 -148752487 + (CCAA)n Simple_repeat Simple_repeat 2 25 0 3 667 461 267 8 25 chr3 10847563 10847682 -148752101 + PB1D10 SINE Alu 1 117 0 3 667 21 57 0 0 chr3 10848586 10848621 -148751162 + AT_rich Low_complexity Low_complexity 1 35 0 3 667 513 0 0 0 chr3 10848714 10848771 -148751012 + (TA)n Simple_repeat Simple_repeat 1 57 0 3 667 462 316 36 22 chr3 10848889 10849028 -148750755 - B1_Mur1 SINE Alu -7 142 2 3 667 232 267 16 16 chr3 10849300 10849361 -148750422 - B4 SINE B4 -218 74 14 3 667 275 262 55 47 chr3 10849379 10849507 -148750276 - B1F SINE Alu 0 149 21 3 667 25 0 0 0 chr3 10850107 10850132 -148749651 + AT_rich Low_complexity Low_complexity 1 25 0 3 667 249 250 12 47 chr3 10850292 10850416 -148749367 + ID_B1 SINE B4 3 167 -57 3 667 2023 136 110 3 chr3 10850927 10851282 -148748501 - L1_Mus3 LINE L1 -3 6635 6243 3 667 3832 77 35 12 chr3 10851282 10851845 -148747938 + L1_Mus3 LINE L1 5669 6244 -322 3 667 4841 129 39 0 chr3 10851838 10852639 -148747144 + L1_Mm LINE L1 4923 5754 -129 3 667 549 44 0 0 chr3 10852697 10852765 -148747018 + (GA)n Simple_repeat Simple_repeat 1 68 0 3 667 435 366 54 43 chr3 10853363 10853643 -148746140 - LTR16C LTR ERVL 0 489 207 3 667 1545 223 54 93 chr3 10853983 10854403 -148745380 - Lx7 LINE L1 0 7696 7307 3 667 180 0 0 0 chr3 10854403 10854423 -148745360 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 3 667 1545 223 54 93 chr3 10854423 10854540 -148745243 - Lx7 LINE L1 -390 7306 7181 3 667 216 245 10 50 chr3 10854813 10854912 -148744871 + CT-rich Low_complexity Low_complexity 2 96 0 4 667 325 190 12 12 chr3 10856982 10857062 -148742721 + Lx8 LINE L1 7394 7473 0 4 667 2320 252 90 15 chr3 10857181 10857857 -148741926 + Lx6 LINE L1 6723 7449 -11 4 667 258 344 0 15 chr3 10858151 10858216 -148741567 - tRNA-Ala-GCG tRNA tRNA -9 66 3 4 667 22397 143 80 18 chr3 10858309 10859937 -148739846 + L1_Mus2 LINE L1 411 2075 -3808 4 667 203 0 0 36 chr3 10859937 10859965 -148739818 + (CAAAA)n Simple_repeat Simple_repeat 4 30 0 4 667 22397 132 89 22 chr3 10859965 10864086 -148735697 + L1_Mus2 LINE L1 2076 6566 0 4 667 1092 56 21 0 chr3 10864545 10864688 -148735095 - B1_Mus1 SINE Alu -1 147 2 4 667 6916 68 17 2 chr3 10864762 10865864 -148733919 + L1_Mus1 LINE L1 5449 6566 -1 4 667 217 344 0 0 chr3 10865935 10865996 -148733787 + B1_Mus2 SINE Alu 2 62 -85 4 667 219 36 0 0 chr3 10866003 10866031 -148733752 + (TTA)n Simple_repeat Simple_repeat 2 29 0 4 667 872 189 51 28 chr3 10866034 10866251 -148733532 - Lx2B LINE L1 -23 6977 6756 4 667 1912 162 27 25 chr3 10866249 10866654 -148733129 - Lx2B LINE L1 -541 6459 6054 4 667 2999 188 104 8 chr3 10866656 10867299 -148732484 + RMER6D LTR ERVK 12 716 -4 4 667 315 246 0 0 chr3 10867327 10867388 -148732395 + B1_Mur2 SINE Alu 82 142 -7 4 667 480 18 0 0 chr3 10867445 10867502 -148732281 + (CA)n Simple_repeat Simple_repeat 1 57 0 4 667 2027 174 61 2 chr3 10867528 10868118 -148731665 + L1_Mur2 LINE L1 957 1592 -4285 4 667 360 0 0 0 chr3 10868118 10868158 -148731625 + (GA)n Simple_repeat Simple_repeat 1 40 0 4 667 2027 172 89 1 chr3 10868158 10868283 -148731500 + L1_Mur2 LINE L1 1593 1732 -4115 4 667 270 81 0 0 chr3 10870186 10870223 -148729560 + (GGGAGA)n Simple_repeat Simple_repeat 1 37 0 4 667 1621 242 45 12 chr3 10870271 10870673 -148729110 - MTD LTR MaLR 0 419 5 4 667 382 127 0 0 chr3 10871137 10871200 -148728583 + L1_Mm LINE L1 5546 5608 -275 4 667 13469 158 36 5 chr3 10871200 10873838 -148725945 - L1_Mur2 LINE L1 -335 5542 2822 4 667 733 276 4 47 chr3 10873838 10874070 -148725713 + RodERV21-int LTR ERV1 1311 1532 -3459 4 667 2204 159 114 19 chr3 10874453 10875192 -148724591 - Lx5 LINE L1 -825 6225 5415 4 667 1903 141 244 30 chr3 10875306 10875773 -148724010 + RLTR6_Mm LTR ERV1 37 603 -51 4 83 60374 35 23 3 chr3 10875774 10883400 -148716383 + RLTR6-int LTR ERV1 1 7778 0 4 668 1862 133 254 31 chr3 10883513 10883962 -148715821 + RLTR6_Mm LTR ERV1 37 585 -69 4 668 268 345 17 42 chr3 10884525 10884643 -148715140 - L1M4b LINE L1 -2007 4999 4880 4 668 724 223 0 7 chr3 10884823 10884963 -148714820 - B1_Mur1 SINE Alu -7 142 4 4 668 338 288 84 25 chr3 10885015 10885218 -148714565 - L1M4b LINE L1 -2425 4581 4367 4 668 363 302 85 30 chr3 10885263 10885427 -148714356 - MLT1D LTR MaLR -32 473 301 4 668 522 211 0 0 chr3 10885585 10885699 -148714084 + (TATATG)n Simple_repeat Simple_repeat 3 116 0 4 668 690 338 135 21 chr3 10886031 10886843 -148712940 - L1M4b LINE L1 -4846 2162 1216 4 668 419 373 104 21 chr3 10887537 10888019 -148711764 - MER92B LTR ERV1 -47 589 68 4 668 301 399 59 63 chr3 10888297 10888567 -148711216 - L1M4b LINE L1 -6618 716 448 4 668 186 43 0 0 chr3 10889124 10889147 -148710636 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 4 668 1134 69 7 0 chr3 10889149 10889294 -148710489 - B1_Mus2 SINE Alu 0 147 2 4 668 336 357 107 0 chr3 10889458 10889598 -148710185 - RSINE1 SINE B4 -6 159 5 4 668 236 404 12 82 chr3 10889865 10890035 -148709748 + RSINE1 SINE B4 3 160 -5 4 668 261 314 121 24 chr3 10893125 10893249 -148706534 - MLT1J2 LTR MaLR -161 287 152 4 668 3072 51 13 3 chr3 10893261 10893653 -148706130 - MTA_Mm LTR MaLR 0 396 1 4 668 8506 57 14 1 chr3 10893653 10894737 -148705046 - MTA_Mm-int LTR MaLR 0 1098 1 4 668 3213 38 10 2 chr3 10894738 10895131 -148704652 - MTA_Mm LTR MaLR 0 396 1 4 668 221 208 62 0 chr3 10896008 10896056 -148703727 - PB1D10 SINE Alu 0 117 67 4 668 404 280 11 0 chr3 10896013 10896106 -148703677 - ID_B1 SINE B4 -5 219 126 4 668 1030 171 67 133 chr3 10896369 10896458 -148703325 - RLTRETN_Mm LTR ERVK 0 322 222 4 668 504 0 0 0 chr3 10896458 10896514 -148703269 + (GA)n Simple_repeat Simple_repeat 1 56 0 4 668 1030 171 67 133 chr3 10896514 10896769 -148703014 - RLTRETN_Mm LTR ERVK -101 221 2 4 668 25 0 0 0 chr3 10897903 10897928 -148701855 + AT_rich Low_complexity Low_complexity 1 25 0 4 668 21 0 0 0 chr3 10898138 10898159 -148701624 + AT_rich Low_complexity Low_complexity 1 21 0 4 668 333 298 106 0 chr3 10898177 10898281 -148701502 - PB1D10 SINE Alu 0 117 3 4 668 297 75 0 0 chr3 10898329 10898369 -148701414 + (TA)n Simple_repeat Simple_repeat 1 40 0 4 668 9585 146 16 40 chr3 10898384 10900079 -148699704 + L1_Mus2 LINE L1 4193 5850 -788 4 668 963 103 7 58 chr3 10900079 10900234 -148699549 + B1_Mus1 SINE Alu 2 148 0 4 668 2132 180 53 96 chr3 10900234 10901095 -148698688 + L1_Mus2 LINE L1 5851 6638 0 4 668 2602 150 18 26 chr3 10901383 10901878 -148697905 + Lx LINE L1 5823 6642 -366 4 668 3767 132 29 18 chr3 10903455 10904077 -148695706 - Lx2A1 LINE L1 -4 7004 6376 4 668 806 158 8 0 chr3 10904077 10904204 -148695579 + Lx2A1 LINE L1 6238 6365 -643 4 668 24650 110 17 10 chr3 10904266 10910155 -148689628 - L1Md_F2 LINE L1 -12 6570 481 4 668 335 235 28 16 chr3 10912663 10912845 -148686938 + CT-rich Low_complexity Low_complexity 1 184 0 4 668 882 113 0 0 chr3 10912846 10912979 -148686804 + (TTTTC)n Simple_repeat Simple_repeat 2 134 0 4 668 792 210 0 0 chr3 10912979 10913117 -148686666 - B1_Mur2 SINE Alu -11 138 1 4 668 1406 294 70 24 chr3 10913373 10914111 -148685672 - Lx9 LINE L1 -1673 5971 5081 4 668 2216 118 185 8 chr3 10914452 10914820 -148684963 - RLTR10C LTR ERVK -3 433 1 4 668 252 315 64 27 chr3 10914908 10915078 -148684705 - LTR81B LTR ERV1? -1129 221 43 4 668 279 0 0 0 chr3 10915870 10915901 -148683882 + (TG)n Simple_repeat Simple_repeat 1 31 0 4 668 22 88 0 0 chr3 10916104 10916161 -148683622 + AT_rich Low_complexity Low_complexity 1 57 0 4 668 378 198 58 19 chr3 10916321 10916424 -148683359 - MLT1A1 LTR MaLR 0 408 302 4 668 239 306 18 27 chr3 10917746 10917857 -148681926 + PB1D10 SINE Alu 3 112 -5 4 668 6209 121 24 1 chr3 10919885 10921290 -148678493 + L1VL4 LINE L1 18 1456 -2103 4 668 5806 104 29 44 chr3 10921288 10921851 -148677932 + L1VL4 LINE L1 2395 2937 -622 4 668 812 117 14 7 chr3 10921851 10921989 -148677794 - L1Md_F2 LINE L1 -10 6572 6434 4 668 5806 104 29 44 chr3 10921989 10922185 -148677598 + L1VL4 LINE L1 2938 3124 -435 4 668 329 0 24 0 chr3 10922185 10922226 -148677557 + (TAAA)n Simple_repeat Simple_repeat 3 44 0 4 668 5806 104 29 44 chr3 10922226 10922450 -148677333 + L1VL4 LINE L1 3125 3364 -195 4 668 34054 81 2 12 chr3 10922451 10927838 -148671945 + L1Md_F3 LINE L1 621 5948 -636 4 668 1381 76 0 0 chr3 10927858 10928042 -148671741 - L1Md_F2 LINE L1 -287 6295 6112 4 668 939 119 0 0 chr3 10928037 10928196 -148671587 + L1VL4 LINE L1 3398 3556 -3 4 668 30 69 0 0 chr3 10929470 10929528 -148670255 + AT_rich Low_complexity Low_complexity 1 58 0 4 668 25 51 0 0 chr3 10929627 10929666 -148670117 + AT_rich Low_complexity Low_complexity 1 39 0 4 668 305 318 64 25 chr3 10929774 10929977 -148669806 - L1MC LINE L1 -2345 5537 5327 4 668 304 290 124 115 chr3 10930904 10931410 -148668373 - L1MC4 LINE L1 -2303 3911 3401 4 668 1910 264 190 10 chr3 10931415 10931499 -148668284 - RMER1B Other Other 0 1066 950 4 668 240 35 0 0 chr3 10931499 10931528 -148668255 + (CA)n Simple_repeat Simple_repeat 1 29 0 4 668 2988 261 105 8 chr3 10931528 10932283 -148667500 - RMER1A Other Other -117 949 45 4 668 389 305 84 55 chr3 10932317 10932591 -148667192 - L1MC4 LINE L1 -4363 1852 1571 4 668 311 206 11 32 chr3 10932791 10932886 -148666897 - Lx9 LINE L1 -16 7628 7536 4 668 516 124 0 0 chr3 10932887 10932992 -148666791 + (TC)n Simple_repeat Simple_repeat 2 106 0 4 668 369 93 0 0 chr3 10932991 10933045 -148666738 + (TA)n Simple_repeat Simple_repeat 1 54 0 4 668 578 172 8 8 chr3 10933045 10933174 -148666609 - Lx9 LINE L1 -127 7517 7389 4 668 365 269 21 26 chr3 10933193 10933367 -148666416 - B3 SINE B2 0 216 7 4 668 22 70 0 0 chr3 10933477 10933520 -148666263 + AT_rich Low_complexity Low_complexity 1 43 0 4 668 333 0 0 0 chr3 10933594 10933631 -148666152 + (TTTA)n Simple_repeat Simple_repeat 1 37 0 4 668 959 161 7 0 chr3 10933631 10933786 -148665997 - B2_Mm2 SINE B2 -38 157 2 4 668 310 299 117 39 chr3 10933875 10934080 -148665703 - L1MC4 LINE L1 -5242 973 753 4 668 22 35 0 0 chr3 10934423 10934452 -148665331 + AT_rich Low_complexity Low_complexity 1 29 0 4 668 1330 219 3 46 chr3 10934472 10934779 -148665004 + Lx9 LINE L1 6611 6904 -740 4 668 23 33 0 0 chr3 10934779 10934809 -148664974 + AT_rich Low_complexity Low_complexity 1 30 0 4 668 3959 167 35 3 chr3 10934815 10936007 -148663776 + L1_Mur1 LINE L1 767 2000 -3886 4 668 11541 103 8 14 chr3 10936008 10937682 -148662101 + RMER16-int LTR ERVK 3743 5406 0 4 668 2099 124 57 34 chr3 10937682 10938063 -148661720 + RMER16 LTR ERVK 1 448 -85 4 668 905 136 17 11 chr3 10938066 10938141 -148661642 + polypurine Low_complexity Low_complexity 2 78 0 4 668 1159 91 11 0 chr3 10938141 10938316 -148661467 + (GAAA)n Simple_repeat Simple_repeat 4 180 0 4 668 905 136 17 11 chr3 10938316 10938406 -148661377 + polypurine Low_complexity Low_complexity 79 169 0 4 668 1168 91 11 0 chr3 10938406 10938582 -148661201 + (GAAA)n Simple_repeat Simple_repeat 3 180 0 4 668 905 136 17 11 chr3 10938582 10938593 -148661190 + polypurine Low_complexity Low_complexity 170 180 0 4 668 18378 111 75 105 chr3 10938608 10942281 -148657502 + L1Md_F2 LINE L1 2025 5586 -297 4 668 7767 55 4 0 chr3 10942282 10943261 -148656522 + L1Md_F2 LINE L1 5588 6570 -12 4 668 7619 82 11 1 chr3 10943266 10944358 -148655425 + L1_Mm LINE L1 1604 2706 -3177 4 668 482 77 15 0 chr3 10944354 10944419 -148655364 + L1Md_F2 LINE L1 6051 6116 -466 4 668 19143 98 9 13 chr3 10944412 10947863 -148651920 - L1Md_A LINE L1 -2013 3870 446 4 668 2457 294 86 54 chr3 10947868 10948236 -148651547 + Lx9 LINE L1 5764 6263 -1381 4 668 534 103 0 0 chr3 10948236 10948314 -148651469 + (CA)n Simple_repeat Simple_repeat 1 78 0 4 668 2457 278 111 109 chr3 10948314 10949688 -148650095 + Lx9 LINE L1 6264 7644 0 4 668 272 336 87 8 chr3 10949927 10950053 -148649730 - B3 SINE B2 0 216 81 4 668 263 339 52 9 chr3 10950240 10950356 -148649427 + B1F1 SINE Alu 1 121 -28 4 668 470 261 99 30 chr3 10950622 10950823 -148648960 - B3 SINE B2 -1 215 1 4 668 240 232 45 26 chr3 10951390 10951493 -148648290 + MIR3 SINE MIR 106 212 -56 4 668 826 246 0 30 chr3 10952426 10952623 -148647160 + B2_Mm2 SINE B2 1 191 -4 4 668 387 312 139 26 chr3 10952783 10952901 -148646882 - RMER21B LTR ERV1 -278 564 423 4 668 1250 80 6 0 chr3 10952901 10953077 -148646706 + (TTCTC)n Simple_repeat Simple_repeat 4 180 0 4 668 387 312 139 26 chr3 10953077 10953152 -148646631 - RMER21B LTR ERV1 -420 422 349 4 668 251 53 0 81 chr3 10953154 10953216 -148646567 + (TTTG)n Simple_repeat Simple_repeat 4 60 0 4 668 324 222 0 36 chr3 10953263 10953347 -148646436 - RMER21B LTR ERV1 -675 167 87 4 668 26 30 0 0 chr3 10953729 10953762 -148646021 + AT_rich Low_complexity Low_complexity 1 33 0 5 668 1377 150 44 0 chr3 10954736 10954962 -148644821 - L1_Mm LINE L1 -208 5675 5440 5 668 738 221 6 28 chr3 10954959 10955136 -148644647 + Lx7 LINE L1 7521 7693 -3 5 668 308 328 5 64 chr3 10955258 10955368 -148644415 - RMER17C LTR ERVK -220 190 85 5 668 252 0 0 0 chr3 10955368 10955396 -148644387 + (GA)n Simple_repeat Simple_repeat 1 28 0 5 668 308 328 5 64 chr3 10955396 10955487 -148644296 - RMER17C LTR ERVK -326 84 1 5 668 794 239 24 6 chr3 10956282 10956450 -148643333 + B3 SINE B2 1 171 -45 5 668 396 317 48 16 chr3 10957259 10957384 -148642399 - Tigger5 DNA MER2_type -2277 129 1 5 668 22 0 0 0 chr3 10957755 10957777 -148642006 + AT_rich Low_complexity Low_complexity 1 22 0 5 668 3100 67 12 2 chr3 10959687 10960104 -148639679 + BGLII LTR ERVK 1 421 0 5 668 26 0 0 0 chr3 10961723 10961749 -148638034 + AT_rich Low_complexity Low_complexity 1 26 0 5 668 41122 7 0 1 chr3 10961749 10968533 -148631250 - L1Md_A LINE L1 0 6582 1 5 668 376 193 32 74 chr3 10968820 10968915 -148630868 + Lx8 LINE L1 7267 7357 -116 5 668 398 358 10 55 chr3 10968916 10969117 -148630666 + B3A SINE B2 3 194 -4 5 668 1003 208 45 0 chr3 10969121 10969323 -148630460 + B3 SINE B2 1 211 -5 5 668 648 0 0 0 chr3 10969596 10969668 -148630115 + (TTTC)n Simple_repeat Simple_repeat 2 73 0 5 668 4834 61 0 3 chr3 10969708 10970329 -148629454 - L1Md_F2 LINE L1 -12 6570 5952 5 668 10859 66 12 0 chr3 10970329 10971731 -148628052 + L1Md_F2 LINE L1 4465 5883 0 5 668 1994 85 3 31 chr3 10972124 10972416 -148627367 - L1_Mus2 LINE L1 0 6566 6283 5 668 1431 48 0 0 chr3 10973040 10973249 -148626534 + (TG)n Simple_repeat Simple_repeat 1 209 0 5 668 269 360 64 93 chr3 10973333 10973783 -148626000 - MLT1D LTR MaLR -38 467 31 5 668 2396 239 79 151 chr3 10974090 10975184 -148624599 - RMER1B Other Other -6 1060 46 5 668 266 257 120 21 chr3 10975778 10975969 -148623814 + L1M5 LINE L1 3663 3872 -2274 5 668 24 32 0 0 chr3 10976947 10976978 -148622805 + AT_rich Low_complexity Low_complexity 1 31 0 5 668 3086 258 63 51 chr3 10977156 10978193 -148621590 + MTC-int LTR MaLR 98 1146 -112 5 668 4062 220 39 7 chr3 10978209 10979048 -148620735 - Lx5 LINE L1 -1 7049 6184 5 668 567 138 91 15 chr3 10979048 10979180 -148620603 + L1_Mur2 LINE L1 4546 4687 -1190 5 668 222 62 0 0 chr3 10979236 10979268 -148620515 + (TTAA)n Simple_repeat Simple_repeat 3 34 0 5 668 273 29 0 0 chr3 10980010 10980044 -148619739 + (TTG)n Simple_repeat Simple_repeat 2 35 0 5 668 2504 102 68 8 chr3 10981096 10981480 -148618303 - MTB_Mm LTR MaLR 0 407 1 5 668 4132 98 10 101 chr3 10982323 10983038 -148616745 + L1_Mus2 LINE L1 5909 6558 -8 5 668 759 90 0 0 chr3 10983041 10983163 -148616620 + (GAAAA)n Simple_repeat Simple_repeat 1 122 0 5 668 35 41 0 0 chr3 10983943 10983992 -148615791 + AT_rich Low_complexity Low_complexity 1 49 0 5 668 474 65 0 0 chr3 10984062 10984124 -148615659 + (TA)n Simple_repeat Simple_repeat 2 63 0 5 668 222 189 89 0 chr3 10984190 10984280 -148615503 + (TA)n Simple_repeat Simple_repeat 2 99 0 5 668 342 278 236 22 chr3 10984281 10984771 -148615012 + L1M4 LINE L1 4706 5293 -853 5 668 334 313 47 19 chr3 10984834 10985049 -148614734 + L1M4 LINE L1 5386 5606 -578 5 668 994 119 56 12 chr3 10985072 10985234 -148614549 + B2_Mm2 SINE B2 1 169 -26 5 668 4818 60 5 8 chr3 10985670 10986320 -148613463 - L1_Mm LINE L1 -2270 3613 2966 5 668 1508 45 0 0 chr3 10986307 10986485 -148613298 + L1Md_F3 LINE L1 5409 5586 -297 5 668 8383 30 3 0 chr3 10986486 10987480 -148612303 + L1Md_F3 LINE L1 5588 6584 0 5 668 6990 118 9 17 chr3 10987494 10989310 -148610473 + L1_Mus3 LINE L1 4834 6638 0 5 668 22 0 0 0 chr3 10989435 10989457 -148610326 + AT_rich Low_complexity Low_complexity 1 22 0 5 668 304 318 136 16 chr3 10989528 10989771 -148610012 - L1M5 LINE L1 -969 5177 4906 5 668 472 212 61 79 chr3 10990678 10990842 -148608941 - RNLTR23 LTR ERVK -2 640 480 5 668 573 88 0 0 chr3 10991143 10991223 -148608560 + (T)n Simple_repeat Simple_repeat 1 80 0 5 668 1266 233 75 83 chr3 10991867 10992238 -148607545 + Lx7 LINE L1 7202 7556 -140 5 668 249 33 0 0 chr3 10992238 10992268 -148607515 + (TTA)n Simple_repeat Simple_repeat 3 32 0 5 668 1266 233 75 83 chr3 10992268 10992387 -148607396 + Lx7 LINE L1 7557 7687 -9 5 668 22 56 0 0 chr3 10992424 10992460 -148607323 + AT_rich Low_complexity Low_complexity 1 36 0 5 668 28 29 0 0 chr3 10994318 10994353 -148605430 + AT_rich Low_complexity Low_complexity 1 35 0 5 668 25 31 0 0 chr3 10994913 10994945 -148604838 + AT_rich Low_complexity Low_complexity 1 32 0 5 668 227 309 70 16 chr3 10995295 10995423 -148604360 - L1M5 LINE L1 -493 5669 5535 5 668 340 276 173 26 chr3 10995635 10995791 -148603992 + B3A SINE B2 2 180 -18 5 668 946 251 5 0 chr3 10995859 10996082 -148603701 - URR1B DNA MER1_type 0 225 2 5 668 231 272 51 34 chr3 10996093 10996211 -148603572 - L1M5 LINE L1 -974 5172 5053 5 668 611 88 0 11 chr3 10996235 10996327 -148603456 + (TCC)n Simple_repeat Simple_repeat 3 93 0 5 668 318 232 0 0 chr3 10996349 10996405 -148603378 - B1_Mur4 SINE Alu -94 56 1 5 668 22 0 0 0 chr3 10996809 10996831 -148602952 + AT_rich Low_complexity Low_complexity 1 22 0 5 668 23 33 0 0 chr3 10997857 10997887 -148601896 + AT_rich Low_complexity Low_complexity 1 30 0 5 668 2920 167 36 88 chr3 10998341 10999382 -148600401 - L1Md_F LINE L1 -4544 1339 332 5 668 367 222 0 28 chr3 10999374 10999483 -148600300 - L1VL2 LINE L1 -6142 276 178 5 668 242 362 60 80 chr3 11000003 11000303 -148599480 + ORR1D2 LTR MaLR 50 343 -27 1 668 340 359 64 20 chr3 11000677 11000879 -148598904 + MLT1E2 LTR MaLR 308 518 -109 2 668 1613 134 128 0 chr3 11002879 11003169 -148596614 - IAPEY3_LTR LTR ERVK -5 327 1 3 668 803 356 132 38 chr3 11003212 11004107 -148595676 + MLT1E2-int LTR MaLR 695 1608 -127 2 668 250 255 19 105 chr3 11004140 11004245 -148595538 + MLT1E2 LTR MaLR 16 111 -297 2 668 1201 191 28 108 chr3 11004647 11005047 -148594736 - RLTR9A LTR ERVK 0 368 1 4 668 1215 276 57 27 chr3 11005264 11005775 -148594008 + Lx8 LINE L1 6137 6662 -811 5 668 329 345 136 20 chr3 11005838 11006089 -148593694 + Lx8 LINE L1 7071 7350 -123 5 668 246 301 0 14 chr3 11006220 11006294 -148593489 + MLT1E2 LTR MaLR 290 362 -46 2 668 21 0 0 0 chr3 11006931 11006952 -148592831 + AT_rich Low_complexity Low_complexity 1 21 0 6 668 21 36 0 0 chr3 11007287 11007315 -148592468 + AT_rich Low_complexity Low_complexity 1 28 0 7 668 1087 68 7 33 chr3 11008505 11008656 -148591127 - B1_Mm SINE Alu 0 147 1 8 669 2861 12 3 0 chr3 11010428 11010771 -148589012 + L1Md_T LINE L1 5242 5585 -298 9 669 8470 34 0 0 chr3 11010772 11011768 -148588015 + L1Md_T LINE L1 5587 6582 0 9 669 270 81 0 0 chr3 11011976 11012013 -148587770 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 669 509 253 12 19 chr3 11012454 11012615 -148587168 - L1MA4 LINE L1 -429 5871 5712 1 669 3460 25 2 0 chr3 11012718 11013112 -148586671 + MTA_Mm LTR MaLR 2 396 0 1 669 254 347 50 8 chr3 11013349 11013468 -148586315 - L2 LINE L2 -652 2767 2644 1 669 257 68 0 22 chr3 11013468 11013513 -148586270 + (TTTA)n Simple_repeat Simple_repeat 2 45 0 1 669 232 48 48 0 chr3 11015368 11015410 -148584373 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 1 669 259 304 57 29 chr3 11015780 11015885 -148583898 - PB1D10 SINE Alu 0 117 10 1 669 1673 21 0 0 chr3 11016184 11016373 -148583410 - B2_Mm1a SINE B2 -3 190 2 1 669 658 262 20 26 chr3 11016703 11016856 -148582927 + B3A SINE B2 2 153 -45 1 669 4886 38 0 0 chr3 11017013 11017592 -148582191 + L1Md_T LINE L1 6004 6582 0 1 669 5750 77 16 23 chr3 11017721 11018517 -148581266 - L1_Mus2 LINE L1 -6 6560 5770 2 669 480 99 0 0 chr3 11018517 11018598 -148581185 + L1_Mm LINE L1 1629 1709 -4174 2 669 948 330 28 28 chr3 11018618 11019088 -148580695 - Lx8 LINE L1 -143 7330 6861 2 669 261 0 0 0 chr3 11020051 11020080 -148579703 + (T)n Simple_repeat Simple_repeat 1 29 0 2 669 2880 64 3 13 chr3 11022145 11022525 -148577258 + L1Md_F2 LINE L1 6206 6581 -1 2 669 2285 105 6 0 chr3 11022540 11022882 -148576901 - L1_Mus1 LINE L1 -708 5175 4832 2 669 7133 85 8 1 chr3 11022871 11024223 -148575560 + L1_Mus1 LINE L1 5204 6566 -1 2 669 462 114 0 0 chr3 11024227 11024297 -148575486 + (GA)n Simple_repeat Simple_repeat 2 71 0 2 669 282 219 47 0 chr3 11025375 11025439 -148574344 - Charlie1b DNA MER1_type -368 155 89 2 669 333 0 0 0 chr3 11025586 11025623 -148574160 + (TG)n Simple_repeat Simple_repeat 2 38 0 2 669 314 284 25 17 chr3 11025629 11025747 -148574036 + (TATATG)n Simple_repeat Simple_repeat 1 119 0 2 669 4773 124 25 7 chr3 11025843 11026567 -148573216 + RMER19A LTR ERVK 1 737 0 3 669 3905 236 110 3 chr3 11027038 11028191 -148571592 - Lx9 LINE L1 -1 7643 6367 3 669 265 213 248 20 chr3 11028220 11028373 -148571410 - Lx9 LINE L1 -1263 6381 6194 3 669 244 297 43 59 chr3 11028401 11028587 -148571196 - Lx9 LINE L1 -1546 6098 5916 3 669 1984 219 50 63 chr3 11028588 11029109 -148570674 - RLTR20B3 LTR ERVK -28 549 36 3 669 673 178 6 50 chr3 11029113 11029273 -148570510 - Lx9 LINE L1 0 5847 5695 3 669 2629 178 37 46 chr3 11030372 11030962 -148568821 + RMER4B LTR ERVK 1 585 0 3 669 230 95 24 0 chr3 11031011 11031053 -148568730 + (CA)n Simple_repeat Simple_repeat 2 44 0 3 669 259 239 0 0 chr3 11031626 11031693 -148568090 + Lx7 LINE L1 7612 7678 -18 3 669 212 308 0 0 chr3 11031937 11031989 -148567794 + (TG)n Simple_repeat Simple_repeat 1 52 0 3 669 36 53 0 0 chr3 11032058 11032115 -148567668 + AT_rich Low_complexity Low_complexity 1 57 0 3 669 207 209 0 0 chr3 11032986 11033029 -148566754 + L2 LINE L2 2034 2076 -1343 3 669 252 208 28 126 chr3 11034287 11034430 -148565353 - L1MC LINE L1 -1162 4984 4856 3 669 408 40 0 0 chr3 11035629 11035679 -148564104 + (TG)n Simple_repeat Simple_repeat 2 51 0 4 669 23 0 0 0 chr3 11035725 11035748 -148564035 + AT_rich Low_complexity Low_complexity 1 23 0 4 669 605 296 70 8 chr3 11035756 11035998 -148563785 - Lx9 LINE L1 -943 6701 6445 4 669 250 259 62 106 chr3 11036444 11036604 -148563179 + RLTR41 LTR ERV1 251 403 -43 4 669 2616 51 5 1 chr3 11038248 11038602 -148561181 + L1Md_F3 LINE L1 5584 5910 -674 4 669 1123 41 0 7 chr3 11038602 11038750 -148561033 + L1Md_F3 LINE L1 6433 6579 -3 4 669 225 0 0 0 chr3 11039486 11039511 -148560272 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 4 669 274 341 7 58 chr3 11039891 11040028 -148559755 + MLT1H LTR MaLR 393 522 -27 4 669 432 0 0 0 chr3 11040038 11040086 -148559697 + (TG)n Simple_repeat Simple_repeat 1 48 0 4 669 450 0 0 0 chr3 11040086 11040135 -148559648 + (GA)n Simple_repeat Simple_repeat 1 50 0 4 669 664 271 129 47 chr3 11041167 11041475 -148558308 - ORR1E LTR MaLR -4 375 1 4 669 693 160 0 0 chr3 11041625 11041750 -148558033 + (TA)n Simple_repeat Simple_repeat 2 126 0 5 669 183 42 0 0 chr3 11042816 11042840 -148556943 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 5 669 476 339 32 57 chr3 11043016 11043332 -148556451 + L1MEd LINE L1 895 1202 -4917 5 669 378 0 0 0 chr3 11043570 11043612 -148556171 + (TC)n Simple_repeat Simple_repeat 1 42 0 5 669 388 182 36 18 chr3 11043650 11043762 -148556021 + L1_Rod LINE L1 3801 3914 -1933 5 669 432 191 0 0 chr3 11043762 11043851 -148555932 + T-rich Low_complexity Low_complexity 1 89 0 5 669 1294 284 42 41 chr3 11044421 11045108 -148554675 + L1_Rod LINE L1 3938 4625 -1222 5 669 6337 94 59 2 chr3 11045201 11045443 -148554340 - L1VL2 LINE L1 -1586 2029 1782 5 669 201 39 0 0 chr3 11045443 11045469 -148554314 + (TTG)n Simple_repeat Simple_repeat 2 27 0 5 669 6337 108 76 3 chr3 11045469 11047017 -148552766 - L1VL2 LINE L1 -1834 1781 101 5 669 24 0 0 0 chr3 11047100 11047124 -148552659 + AT_rich Low_complexity Low_complexity 1 24 0 5 669 333 0 0 0 chr3 11047200 11047237 -148552546 + (TG)n Simple_repeat Simple_repeat 1 37 0 5 669 458 84 0 27 chr3 11047329 11047402 -148552381 + (GGGAGA)n Simple_repeat Simple_repeat 3 73 0 6 669 1101 272 31 78 chr3 11047819 11048205 -148551578 + ORR1D2 LTR MaLR 1 368 -2 6 669 1186 157 12 144 chr3 11048732 11049125 -148550658 + L1_Mur3 LINE L1 1610 1945 -3935 6 669 259 235 114 32 chr3 11049161 11049319 -148550464 + ORR1D2-int LTR MaLR 584 754 -755 6 669 463 218 47 140 chr3 11049190 11049217 -148550566 + B4A SINE B4 70 216 -76 6 669 1043 84 0 27 chr3 11049217 11049348 -148550435 + B1_Mus2 SINE Alu 6 135 -12 6 669 306 0 0 0 chr3 11049348 11049382 -148550401 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 6 669 463 218 47 140 chr3 11049382 11049394 -148550389 + B4A SINE B4 217 224 -68 6 669 2978 176 37 3 chr3 11049495 11050118 -148549665 + L1_Mur2 LINE L1 2050 2693 -3184 6 669 835 231 12 24 chr3 11050119 11050368 -148549415 + L1VL1 LINE L1 34 279 -6143 6 669 394 234 0 0 chr3 11050379 11050473 -148549310 + L1Md_A LINE L1 332 425 -6191 6 669 31419 49 2 7 chr3 11050471 11054950 -148544833 + L1Md_A LINE L1 928 5373 -510 6 669 2496 50 6 0 chr3 11054950 11055269 -148544514 + RLTR10 LTR ERVK 1 321 -69 6 669 871 17 112 0 chr3 11055422 11055538 -148544245 + RLTR10 LTR ERVK 262 390 0 7 669 6836 46 80 0 chr3 11055584 11056493 -148543290 + RLTR10-int LTR ERVK 13 994 -993 7 669 493 309 26 26 chr3 11056547 11056939 -148542844 + IAP-d-int LTR ERVK 738 1061 -5481 7 669 8447 20 0 0 chr3 11057021 11058018 -148541765 + RLTR10-int LTR ERVK 990 1986 -1 7 669 2496 50 6 0 chr3 11058018 11058337 -148541446 + RLTR10 LTR ERVK 1 321 -69 7 669 965 39 15 15 chr3 11058436 11058568 -148541215 + RLTR10 LTR ERVK 259 390 0 7 669 1674 52 0 0 chr3 11058568 11058779 -148541004 + L1Md_F3 LINE L1 5376 5586 -297 7 669 7864 47 11 0 chr3 11058779 11059752 -148540031 + L1Md_F3 LINE L1 5587 6570 -14 7 669 4155 206 32 34 chr3 11059759 11061178 -148538605 + Lx5 LINE L1 5345 6655 -395 7 669 21 36 0 0 chr3 11062074 11062102 -148537681 + AT_rich Low_complexity Low_complexity 1 28 0 7 669 353 75 19 0 chr3 11064004 11064057 -148535726 + (TA)n Simple_repeat Simple_repeat 2 55 0 7 669 781 92 150 0 chr3 11064629 11064749 -148535034 - B1_Mus1 SINE Alu -10 138 1 7 669 448 354 35 14 chr3 11064755 11065159 -148534624 - Lx7 LINE L1 -228 7245 6821 7 669 648 317 106 16 chr3 11065718 11066106 -148533677 - Lx9 LINE L1 -749 6895 6473 8 669 31837 9 0 0 chr3 11066113 11070588 -148529195 - L1Md_A LINE L1 0 6582 2108 8 669 1416 58 10 55 chr3 11070588 11070790 -148528993 + B2_Mm1t SINE B2 1 193 0 8 669 802 26 9 0 chr3 11070790 11070904 -148528879 - L1Md_A LINE L1 -3770 2113 1999 8 669 636 326 96 31 chr3 11070931 11070996 -148528787 + Lx8 LINE L1 6789 6847 -626 8 669 1022 45 0 8 chr3 11070996 11071129 -148528654 + (GAA)n Simple_repeat Simple_repeat 2 133 0 8 669 636 326 96 31 chr3 11071129 11071481 -148528302 + Lx8 LINE L1 6848 7233 -240 8 669 676 290 70 23 chr3 11072948 11073607 -148526176 - L1M2 LINE L1 -773 5539 4850 8 669 201 74 0 0 chr3 11073611 11073638 -148526145 + (TG)n Simple_repeat Simple_repeat 2 28 0 8 669 1064 233 159 15 chr3 11075450 11075584 -148524199 + MTD LTR MaLR 25 178 -241 8 669 468 0 0 0 chr3 11075584 11075636 -148524147 + (TG)n Simple_repeat Simple_repeat 2 53 0 8 669 1064 233 159 15 chr3 11075636 11075841 -148523942 + MTD LTR MaLR 179 412 -7 8 669 369 0 0 0 chr3 11075928 11075969 -148523814 + (CA)n Simple_repeat Simple_repeat 2 42 0 8 669 3562 38 33 7 chr3 11076300 11076751 -148523032 + L1Md_F2 LINE L1 6120 6582 0 9 669 467 301 138 110 chr3 11078118 11078512 -148521271 - MER67D LTR ERV1 0 514 111 9 669 2332 94 6 0 chr3 11078512 11078842 -148520941 - L1_Mus4 LINE L1 -7 6629 6298 9 669 467 301 138 110 chr3 11078842 11078947 -148520836 - MER67D LTR ERV1 -404 110 1 9 669 688 147 15 0 chr3 11078982 11079118 -148520665 + (TCTA)n Simple_repeat Simple_repeat 3 140 0 9 669 324 188 0 0 chr3 11079131 11079195 -148520588 + (TATG)n Simple_repeat Simple_repeat 3 66 0 9 669 342 67 0 0 chr3 11079212 11079257 -148520526 + (TCTA)n Simple_repeat Simple_repeat 3 47 0 9 669 216 86 0 0 chr3 11080223 11080258 -148519525 + (TTTTTG)n Simple_repeat Simple_repeat 6 40 0 9 669 760 30 30 0 chr3 11080258 11080359 -148519424 - B1_Mm SINE Alu 0 147 44 9 669 338 240 88 93 chr3 11080298 11080491 -148519292 - RLTR25B LTR ERVK -519 509 318 9 669 215 389 54 5 chr3 11080716 11080902 -148518881 + MIR SINE MIR 28 222 -40 9 669 1100 98 18 6 chr3 11080937 11081102 -148518681 + B2_Mm2 SINE B2 3 169 -26 1 669 21 36 0 0 chr3 11082110 11082138 -148517645 + AT_rich Low_complexity Low_complexity 1 28 0 1 669 2053 155 47 35 chr3 11082549 11082977 -148516806 + RMER17C-int LTR ERVK 2806 3238 0 1 669 517 223 51 16 chr3 11082977 11083254 -148516529 + RMER17C LTR ERVK 1 410 0 1 669 406 120 13 13 chr3 11083684 11083739 -148516044 + (TC)n Simple_repeat Simple_repeat 2 56 0 1 669 4030 93 25 48 chr3 11083739 11084340 -148515443 - LTRIS_Mus LTR ERV1 0 587 1 1 669 1406 48 6 1 chr3 11084340 11084538 -148515245 + (TC)n Simple_repeat Simple_repeat 1 199 0 1 669 3960 137 42 14 chr3 11084552 11085245 -148514538 - Lx LINE L1 -25 6629 5915 1 669 420 208 57 24 chr3 11085713 11085836 -148513947 - RodERV21-int LTR ERV1 -176 4815 4689 1 669 1049 128 0 0 chr3 11085854 11086002 -148513781 + B1_Mus1 SINE Alu 1 148 0 1 669 285 100 0 0 chr3 11086004 11086054 -148513729 + (A)n Simple_repeat Simple_repeat 1 50 0 1 669 537 297 28 20 chr3 11086079 11086333 -148513450 - RodERV21-int LTR ERV1 -327 4664 4409 1 669 448 353 54 27 chr3 11086336 11086709 -148513074 - RodERV21-int LTR ERV1 -1435 3556 3174 1 669 314 211 0 28 chr3 11087509 11087616 -148512167 - RodERV21-int LTR ERV1 -1319 5772 5675 1 669 7260 115 14 5 chr3 11087755 11087775 -148512008 + L1_Mus3 LINE L1 4729 4748 -1135 1 669 2924 67 12 42 chr3 11087775 11088183 -148511600 - MTA_Mm LTR MaLR 0 396 1 1 669 7260 101 19 4 chr3 11088183 11089655 -148510128 + L1_Mus3 LINE L1 4749 6242 -396 1 669 562 124 0 9 chr3 11089655 11089761 -148510022 + L1_Mus3 LINE L1 6533 6637 -1 1 669 441 309 14 47 chr3 11091279 11091554 -148508229 - RodERV21-int LTR ERV1 -3188 3903 3638 1 669 262 45 22 22 chr3 11091626 11091671 -148508112 + (TTTTG)n Simple_repeat Simple_repeat 2 46 0 1 669 4774 289 35 47 chr3 11091766 11093732 -148506051 - RodERV21-int LTR ERV1 -2273 2718 777 1 669 476 302 195 14 chr3 11093911 11094260 -148505523 - Lx8 LINE L1 -733 6740 6329 1 669 351 0 0 0 chr3 11094515 11094554 -148505229 + (GA)n Simple_repeat Simple_repeat 1 39 0 1 669 879 102 0 0 chr3 11094554 11094682 -148505101 + (GAA)n Simple_repeat Simple_repeat 3 130 0 1 669 725 239 74 23 chr3 11095322 11095539 -148504244 + ORR1E LTR MaLR 1 229 -141 1 669 495 138 0 0 chr3 11095577 11095664 -148504119 + (TA)n Simple_repeat Simple_repeat 1 87 0 1 669 46 19 0 0 chr3 11095693 11095746 -148504037 + AT_rich Low_complexity Low_complexity 1 53 0 1 669 2482 172 116 61 chr3 11095961 11096538 -148503245 + RMER19C LTR ERVK 3 611 0 1 669 295 333 73 59 chr3 11096555 11096775 -148503008 + MLT1C LTR MaLR 1 223 -244 1 669 1739 173 133 4 chr3 11097786 11098190 -148501593 + Lx2B LINE L1 6472 6941 -59 1 669 802 10 37 28 chr3 11098247 11098355 -148501428 - B2_Mm1a SINE B2 0 193 85 1 669 2035 32 0 0 chr3 11098355 11098605 -148501178 + L1Md_T LINE L1 5337 5586 -297 1 669 8050 57 0 0 chr3 11098605 11099601 -148500182 + L1Md_T LINE L1 5587 6582 0 1 669 700 203 143 53 chr3 11099601 11099866 -148499917 + RMER1C Other Other 1053 1341 -1 1 669 225 152 0 0 chr3 11099872 11099909 -148499874 + (TA)n Simple_repeat Simple_repeat 1 37 0 1 669 1189 42 0 0 chr3 11099909 11100053 -148499730 - B1_Mus1 SINE Alu -1 147 4 1 669 225 152 0 0 chr3 11100053 11100061 -148499722 + (TA)n Simple_repeat Simple_repeat 1 8 0 1 669 31667 79 4 4 chr3 11101764 11107932 -148491851 - L1Md_F2 LINE L1 0 6582 415 1 669 360 64 0 0 chr3 11108274 11108321 -148491462 + (TCTA)n Simple_repeat Simple_repeat 3 49 0 1 669 388 184 54 0 chr3 11108543 11108690 -148491093 + (TA)n Simple_repeat Simple_repeat 1 155 0 1 669 22 0 0 0 chr3 11109363 11109385 -148490398 + AT_rich Low_complexity Low_complexity 1 22 0 1 669 21286 174 28 12 chr3 11110088 11116247 -148483536 - Lx2A LINE L1 0 7008 739 1 669 55 40 0 0 chr3 11117808 11117884 -148481899 + AT_rich Low_complexity Low_complexity 1 76 0 1 669 465 50 0 0 chr3 11118028 11118088 -148481695 + (CA)n Simple_repeat Simple_repeat 2 61 0 1 669 266 232 14 14 chr3 11118469 11118539 -148481244 - Lx9 LINE L1 -234 7410 7341 1 669 614 145 0 9 chr3 11118588 11118699 -148481084 + CT-rich Low_complexity Low_complexity 2 111 0 1 669 21030 9 0 0 chr3 11120829 11124016 -148475767 - L1Md_A LINE L1 0 6582 3395 1 669 2122 111 47 41 chr3 11124016 11124381 -148475402 + IAPLTR1_Mm LTR ERVK 1 367 0 1 669 53897 16 8 13 chr3 11124381 11130893 -148468890 + IAPEz-int LTR ERVK 8 6481 0 1 669 2136 109 47 41 chr3 11130893 11131258 -148468525 + IAPLTR1_Mm LTR ERVK 1 367 0 1 669 17971 15 2 11 chr3 11131258 11134670 -148465113 - L1Md_A LINE L1 -2483 3400 25 1 669 317 24 24 0 chr3 11135417 11135459 -148464324 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 1 669 657 152 13 26 chr3 11135625 11135780 -148464003 - Lx9 LINE L1 -15 7629 7477 1 669 228 135 0 0 chr3 11135795 11135832 -148463951 + (TA)n Simple_repeat Simple_repeat 2 38 0 1 669 7210 132 27 20 chr3 11138263 11140128 -148459655 - Lx3C LINE L1 -5 6971 5094 1 669 369 301 61 20 chr3 11140256 11140433 -148459350 - B3 SINE B2 -3 195 2 1 669 21 0 0 0 chr3 11140467 11140488 -148459295 + AT_rich Low_complexity Low_complexity 1 21 0 1 669 21 0 0 0 chr3 11140524 11140545 -148459238 + AT_rich Low_complexity Low_complexity 1 21 0 1 669 270 286 0 14 chr3 11140567 11140638 -148459145 - B4A SINE B4 -12 280 211 1 669 232 228 198 47 chr3 11140638 11140744 -148459039 + RLTR6_Mm LTR ERV1 1 122 -532 1 83 2012 126 258 27 chr3 11140746 11141195 -148458588 + RLTR6_Mm LTR ERV1 37 589 -65 1 670 58447 37 12 0 chr3 11141195 11148781 -148451002 + RLTR6-int LTR ERV1 1 7778 0 1 670 232 228 198 47 chr3 11148781 11148887 -148450896 + RLTR6_Mm LTR ERV1 1 122 -532 1 670 1962 135 250 48 chr3 11148889 11149365 -148450418 + RLTR6_Mm LTR ERV1 37 608 -46 1 670 253 232 54 0 chr3 11149416 11149472 -148450311 - B4A SINE B4 -191 101 43 1 670 727 66 0 19 chr3 11149919 11150027 -148449756 + (TTCC)n Simple_repeat Simple_repeat 3 108 0 1 670 1012 131 6 6 chr3 11150033 11150209 -148449574 + (TTTCC)n Simple_repeat Simple_repeat 4 179 0 1 670 378 0 0 0 chr3 11150210 11150252 -148449531 + (TTTC)n Simple_repeat Simple_repeat 3 44 0 1 670 4138 158 32 28 chr3 11150253 11151002 -148448781 - Lx4B LINE L1 -11 7047 6296 1 670 4655 168 16 5 chr3 11151008 11151899 -148447884 - L1_Mur2 LINE L1 -32 5845 4945 1 670 318 180 0 0 chr3 11152200 11152261 -148447522 + (TA)n Simple_repeat Simple_repeat 1 61 0 1 670 3427 136 23 7 chr3 11152262 11152824 -148446959 - Lx3A LINE L1 -6 6975 6405 1 670 880 264 49 139 chr3 11153782 11154170 -148445613 - MTE2a LTR MaLR -8 371 19 1 670 3504 20 2 0 chr3 11154268 11154663 -148445120 + MTA_Mm LTR MaLR 1 396 0 1 670 307 293 32 15 chr3 11154701 11154812 -148444971 + MTE2a LTR MaLR 197 309 -70 1 670 284 19 36 36 chr3 11154812 11154867 -148444916 + (TTG)n Simple_repeat Simple_repeat 2 56 0 1 670 233 302 38 45 chr3 11154867 11154887 -148444896 + MTE2a LTR MaLR 310 327 -52 1 670 735 300 28 0 chr3 11155416 11155596 -148444187 - B3 SINE B2 -31 185 1 1 670 24 0 0 0 chr3 11156064 11156088 -148443695 + AT_rich Low_complexity Low_complexity 1 24 0 1 670 522 114 0 0 chr3 11156679 11156758 -148443025 + (A)n Simple_repeat Simple_repeat 1 79 0 1 670 184 238 56 101 chr3 11157183 11157272 -148442511 - L4 LINE RTE -1763 266 182 1 670 372 380 12 71 chr3 11157394 11157564 -148442219 + B4A SINE B4 2 161 -131 1 670 572 304 26 43 chr3 11158468 11158698 -148441085 + MER31A LTR ERV1 6 231 -254 1 670 4260 174 136 11 chr3 11158728 11159977 -148439806 + Lx3C LINE L1 5587 6996 -1 1 670 287 303 13 0 chr3 11160088 11160164 -148439619 - ID_B1 SINE B4 -15 209 133 1 670 243 0 0 0 chr3 11160261 11160288 -148439495 + (TC)n Simple_repeat Simple_repeat 2 28 0 1 670 350 91 0 18 chr3 11160288 11160343 -148439440 + (TG)n Simple_repeat Simple_repeat 2 56 0 1 670 363 344 138 7 chr3 11160389 11160541 -148439242 - B4A SINE B4 -113 179 8 1 670 576 0 0 0 chr3 11160616 11160680 -148439103 + (TA)n Simple_repeat Simple_repeat 2 65 0 1 670 180 0 0 0 chr3 11160892 11160912 -148438871 + (TC)n Simple_repeat Simple_repeat 2 21 0 1 670 587 325 19 0 chr3 11160925 11161085 -148438698 - RSINE1 SINE B4 -2 163 1 1 670 271 294 75 11 chr3 11161218 11161311 -148438472 + PB1D10 SINE Alu 6 104 -13 1 670 475 326 118 73 chr3 11161532 11161889 -148437894 + MLT1B LTR MaLR 17 389 -1 1 670 275 215 0 0 chr3 11162062 11162127 -148437656 + (CA)n Simple_repeat Simple_repeat 2 66 0 1 670 2217 93 51 28 chr3 11162907 11163262 -148436521 + L1_Mus3 LINE L1 6269 6631 -7 1 670 199 317 74 37 chr3 11164802 11164910 -148434873 - MIRm SINE MIR -98 178 67 1 670 1934 138 82 0 chr3 11164959 11165277 -148434506 - ORR1B1 LTR MaLR -4 390 47 1 670 420 91 0 0 chr3 11165420 11165486 -148434297 + (TG)n Simple_repeat Simple_repeat 1 66 0 1 670 200 291 13 0 chr3 11166735 11166814 -148432969 + (TA)n Simple_repeat Simple_repeat 2 81 0 1 670 306 261 124 11 chr3 11167086 11167175 -148432608 - MTD LTR MaLR -311 108 10 1 670 279 0 0 0 chr3 11167859 11167890 -148431893 + (TG)n Simple_repeat Simple_repeat 1 31 0 1 670 183 80 0 0 chr3 11167890 11167914 -148431869 + (CG)n Simple_repeat Simple_repeat 2 26 0 1 670 244 304 54 60 chr3 11168404 11168572 -148431211 + HAL1 LINE L1 86 252 -2255 1 670 1220 221 101 37 chr3 11169283 11169631 -148430152 - ORR1D1 LTR MaLR -2 372 3 1 670 25 0 0 0 chr3 11170100 11170125 -148429658 + AT_rich Low_complexity Low_complexity 1 25 0 1 670 412 18 35 0 chr3 11170441 11170498 -148429285 + (TG)n Simple_repeat Simple_repeat 2 60 0 1 670 296 299 45 27 chr3 11172734 11172844 -148426939 - B1F1 SINE Alu -6 143 32 1 670 410 327 98 19 chr3 11172899 11173164 -148426619 + MER44A DNA MER2_type 11 296 -43 1 670 1075 247 56 38 chr3 11173952 11174431 -148425352 + RMER19C LTR ERVK 64 593 -18 1 670 937 137 26 0 chr3 11174431 11174584 -148425199 + Lx LINE L1 6211 6367 -287 1 670 1229 192 9 4 chr3 11174764 11174989 -148424794 + MTC LTR MaLR 196 421 0 1 670 447 307 15 38 chr3 11174989 11175118 -148424665 - RSINE1 SINE B4 -29 136 11 1 670 1239 108 0 5 chr3 11175841 11176027 -148423756 - B2_Mm2 SINE B2 -5 190 6 1 670 14913 84 16 39 chr3 11176091 11178459 -148421324 - L1VL4 LINE L1 0 3559 1246 1 670 222 37 0 0 chr3 11178460 11178487 -148421296 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 2 670 2377 88 8 17 chr3 11178495 11178855 -148420928 - L1_Mus3 LINE L1 -20 6618 6262 2 670 3194 78 16 11 chr3 11178841 11179551 -148420232 - L1VL4 LINE L1 -2296 1263 550 1 670 1485 227 60 47 chr3 11179698 11180119 -148419664 + Lx5 LINE L1 6650 7050 0 2 670 234 299 40 30 chr3 11180226 11180326 -148419457 - RLTR19C LTR ERVK -381 125 25 2 670 348 331 0 6 chr3 11180356 11180517 -148419266 + L1MC4a LINE L1 7527 7686 -196 2 670 4612 175 21 126 chr3 11182063 11182757 -148417026 - L1_Mur3 LINE L1 -1656 4224 3543 2 670 793 143 0 0 chr3 11182757 11182876 -148416907 + B1_Mus1 SINE Alu 1 119 -29 2 670 4612 175 21 126 chr3 11182876 11183370 -148416413 - L1_Mur3 LINE L1 -1656 3542 3055 2 670 225 94 0 0 chr3 11183370 11183402 -148416381 + (TCC)n Simple_repeat Simple_repeat 3 34 0 2 670 442 160 41 6 chr3 11184171 11184341 -148415442 + (TCTA)n Simple_repeat Simple_repeat 4 179 0 2 670 1423 62 0 6 chr3 11184356 11184535 -148415248 + L1_Mus1 LINE L1 6304 6481 -86 2 670 22 35 0 0 chr3 11184562 11184591 -148415192 + AT_rich Low_complexity Low_complexity 1 29 0 2 670 7724 69 1 4 chr3 11184599 11185648 -148414135 - L1Md_F2 LINE L1 -2 6580 5535 2 670 3919 109 45 2 chr3 11185651 11186250 -148413533 - L1Md_F2 LINE L1 -5408 1208 584 2 670 299 321 84 78 chr3 11186896 11187075 -148412708 - MLT2D LTR ERVL -56 358 179 2 670 763 252 85 42 chr3 11187259 11187590 -148412193 + Lx9 LINE L1 7292 7636 -8 2 670 1868 228 68 4 chr3 11187619 11188056 -148411727 + RMER4B LTR ERVK 20 534 -51 2 670 435 38 0 0 chr3 11188056 11188109 -148411674 + (GAA)n Simple_repeat Simple_repeat 1 53 0 2 670 265 172 276 0 chr3 11188109 11188147 -148411636 + RMER4B LTR ERVK 535 584 -1 2 670 328 308 69 21 chr3 11188148 11188337 -148411446 + L1M4 LINE L1 4040 4237 -1909 2 670 2164 113 3 0 chr3 11188467 11188786 -148410997 + ORR1A2 LTR MaLR 1 320 -7 2 670 8469 159 106 41 chr3 11188803 11190646 -148409137 + ORR1A2-int LTR MaLR 1 1963 0 2 670 1982 147 25 12 chr3 11190646 11190969 -148408814 + ORR1A2 LTR MaLR 1 327 0 2 670 30 0 0 0 chr3 11191131 11191161 -148408622 + AT_rich Low_complexity Low_complexity 1 30 0 2 670 197 345 23 85 chr3 11191185 11191315 -148408468 + L3 LINE CR1 3838 3959 -530 2 670 1957 276 48 34 chr3 11191499 11192195 -148407588 - Lx9 LINE L1 -594 7050 6358 2 670 3713 93 23 0 chr3 11192636 11193154 -148406629 + Lx3C LINE L1 5324 5853 -33 2 670 3832 146 24 0 chr3 11193170 11193501 -148406282 + Lx3C LINE L1 6058 6390 -586 2 670 221 0 0 33 chr3 11193501 11193531 -148406252 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 2 670 3832 146 24 0 chr3 11193531 11193823 -148405960 + Lx3C LINE L1 6391 6695 -281 2 670 785 164 46 23 chr3 11194934 11195109 -148404674 + Lx3C LINE L1 6796 6974 -2 2 670 335 293 126 38 chr3 11195173 11195387 -148404396 + L1MB4 LINE L1 5667 5902 -278 2 670 273 119 0 0 chr3 11195387 11195429 -148404354 + (TA)n Simple_repeat Simple_repeat 2 43 0 2 670 335 293 126 38 chr3 11195429 11195452 -148404331 + L1MB4 LINE L1 5903 5925 -255 2 670 198 111 73 18 chr3 11195454 11195509 -148404274 + (TTATA)n Simple_repeat Simple_repeat 2 59 0 2 670 1616 202 34 29 chr3 11195973 11196391 -148403392 + Lx9 LINE L1 7225 7644 0 2 670 29 0 0 0 chr3 11196994 11197023 -148402760 + AT_rich Low_complexity Low_complexity 1 29 0 2 670 373 299 42 8 chr3 11197674 11197792 -148401991 + B3A SINE B2 2 123 -75 2 670 207 304 0 0 chr3 11197810 11197866 -148401917 + G-rich Low_complexity Low_complexity 2 57 0 2 670 334 144 49 33 chr3 11197907 11198029 -148401754 + (CAGAGA)n Simple_repeat Simple_repeat 2 125 0 2 670 2328 66 119 11 chr3 11198383 11198735 -148401048 + RLTR10 LTR ERVK 1 390 0 2 670 21 0 0 0 chr3 11199125 11199146 -148400637 + AT_rich Low_complexity Low_complexity 1 21 0 2 670 285 29 0 0 chr3 11201086 11201120 -148398663 + (T)n Simple_repeat Simple_repeat 1 34 0 2 670 306 344 25 37 chr3 11201424 11201587 -148398196 + RSINE1 SINE B4 1 161 -4 2 670 1755 260 30 52 chr3 11202419 11202972 -148396811 + Lx6 LINE L1 6519 7434 -26 2 670 273 75 0 0 chr3 11202972 11203012 -148396771 + (TAAAA)n Simple_repeat Simple_repeat 2 41 0 2 670 4461 179 52 20 chr3 11203279 11204141 -148395642 + RMER19B LTR ERVK 1 890 -12 2 670 442 301 0 34 chr3 11204253 11204370 -148395413 - RSINE1 SINE B4 -48 117 5 2 670 2000 132 12 3 chr3 11204427 11204746 -148395037 - ORR1A2 LTR MaLR -4 323 2 2 670 4393 106 47 12 chr3 11204747 11205432 -148394351 - ORR1A2-int LTR MaLR 0 1963 1255 2 670 3816 62 0 4 chr3 11205445 11205943 -148393840 - L1Md_F2 LINE L1 -391 5492 4997 2 670 619 42 0 0 chr3 11205941 11206013 -148393770 + L1Md_F2 LINE L1 5512 5583 -300 2 670 8114 51 0 0 chr3 11206017 11207012 -148392771 + L1Md_F2 LINE L1 5588 6582 0 2 670 5143 163 109 25 chr3 11207012 11208158 -148391625 - ORR1A2-int LTR MaLR -716 1247 6 2 670 1562 138 16 0 chr3 11208160 11208413 -148391370 - ORR1A2 LTR MaLR -2 325 69 2 670 2867 80 2 15 chr3 11208554 11208950 -148390833 + L1_Mus2 LINE L1 6176 6566 0 2 670 340 82 0 32 chr3 11209421 11209484 -148390299 + (TA)n Simple_repeat Simple_repeat 2 62 0 2 670 233 192 27 14 chr3 11209501 11209567 -148390216 + (TA)n Simple_repeat Simple_repeat 2 68 0 2 670 212 86 29 0 chr3 11209567 11209602 -148390181 + (CA)n Simple_repeat Simple_repeat 2 37 0 2 670 233 192 27 14 chr3 11209602 11209609 -148390174 + (TA)n Simple_repeat Simple_repeat 1 7 0 2 670 903 295 60 118 chr3 11210125 11210525 -148389258 + MTE2a LTR MaLR 1 377 -2 2 670 1236 163 92 14 chr3 11210935 11211187 -148388596 - RLTR9E LTR ERVK 0 409 111 2 670 338 61 0 20 chr3 11211187 11211237 -148388546 + (CAG)n Simple_repeat Simple_repeat 1 49 0 2 670 882 222 177 51 chr3 11211237 11211335 -148388448 - RLTR9E LTR ERVK -293 110 9 2 670 519 105 0 0 chr3 11211371 11211447 -148388336 - ETnERV2-int LTR ERVK 0 7406 7331 2 670 1789 177 170 27 chr3 11211447 11211918 -148387865 - RLTR13D6 LTR ERVK -363 539 1 2 670 1523 141 16 8 chr3 11211927 11212177 -148387606 - ETnERV3-int LTR ERVK -28 5780 5529 2 670 347 142 0 53 chr3 11212182 11212258 -148387525 - ETnERV3-int LTR ERVK -1172 6072 6009 2 670 1407 131 37 20 chr3 11212355 11212643 -148387140 - ETnERV2-int LTR ERVK -977 6429 6222 2 670 969 224 43 13 chr3 11212639 11212870 -148386913 - ETnERV2-int LTR ERVK -4714 2692 2455 2 670 650 164 24 8 chr3 11212884 11213007 -148386776 - ETnERV2-int LTR ERVK -4196 1210 1086 2 670 324 200 52 26 chr3 11213010 11213087 -148386696 - ETnERV2-int LTR ERVK -4587 819 741 2 670 276 146 0 0 chr3 11213080 11213128 -148386655 - ETnERV2-int LTR ERVK -5218 188 141 2 670 303 208 27 14 chr3 11213518 11213591 -148386192 - RLTR45-int LTR ERVK -5080 2164 2091 2 670 571 221 24 78 chr3 11213581 11213787 -148385996 - MMETn-int LTR ERVK -4545 299 105 2 670 320 204 29 58 chr3 11213819 11213923 -148385860 - MMETn-int LTR ERVK -4742 102 2 2 670 1963 138 98 11 chr3 11213929 11214295 -148385488 - RLTR9E LTR ERVK -5 404 7 2 670 225 0 0 0 chr3 11215487 11215512 -148384271 + (TTTTA)n Simple_repeat Simple_repeat 4 28 0 2 670 609 302 50 45 chr3 11215517 11215718 -148384065 - ID_B1 SINE B4 -20 204 3 2 670 347 340 0 20 chr3 11215990 11216089 -148383694 + B1F2 SINE Alu 2 98 -51 2 670 384 194 8 15 chr3 11217948 11218079 -148381704 + (TG)n Simple_repeat Simple_repeat 1 130 0 2 670 1381 49 49 11 chr3 11219241 11219269 -148380514 - B2_Mm1a SINE B2 -1 192 156 2 670 186 43 0 0 chr3 11219269 11219292 -148380491 + (TTTA)n Simple_repeat Simple_repeat 3 25 0 2 670 1381 49 49 11 chr3 11219292 11219448 -148380335 - B2_Mm1a SINE B2 -38 155 1 2 670 184 298 50 50 chr3 11219938 11220037 -148379746 - MIR SINE MIR 0 262 164 2 670 267 31 0 0 chr3 11221320 11221352 -148378431 + (TA)n Simple_repeat Simple_repeat 1 32 0 2 670 6342 113 10 0 chr3 11221388 11222945 -148376838 - L1_Mus3 LINE L1 -208 6430 4854 2 670 15043 148 8 33 chr3 11222927 11225859 -148373924 - L1_Mus3 LINE L1 -1856 4027 1179 2 670 356 19 19 0 chr3 11225859 11225912 -148373871 - L1Md_T LINE L1 0 6582 6529 2 670 2965 217 4 39 chr3 11225912 11226447 -148373336 - L1_Mus3 LINE L1 -5479 1178 656 2 670 553 276 16 0 chr3 11226450 11226577 -148373206 + ETnERV2-int LTR ERVK 7074 7202 -204 2 670 699 46 0 0 chr3 11227024 11227111 -148372672 + (TCC)n Simple_repeat Simple_repeat 3 89 0 2 670 1162 50 0 0 chr3 11227111 11227250 -148372533 - B1_Mus1 SINE Alu -9 139 1 2 670 21 0 0 0 chr3 11228734 11228755 -148371028 + AT_rich Low_complexity Low_complexity 1 21 0 2 670 264 30 0 0 chr3 11228776 11228809 -148370974 + (TG)n Simple_repeat Simple_repeat 2 34 0 2 670 629 277 157 36 chr3 11228879 11229172 -148370611 + ORR1E LTR MaLR 4 361 -18 2 670 432 0 0 0 chr3 11229581 11229629 -148370154 + (TG)n Simple_repeat Simple_repeat 2 49 0 2 670 398 285 22 96 chr3 11229659 11229795 -148369988 - RSINE1 SINE B4 -38 127 2 2 670 275 274 98 46 chr3 11229989 11230142 -148369641 + MLT1B LTR MaLR 29 189 -201 2 670 254 330 32 12 chr3 11230282 11230420 -148369363 + MLT1B LTR MaLR 270 467 0 2 670 23 33 0 0 chr3 11230509 11230539 -148369244 + AT_rich Low_complexity Low_complexity 1 30 0 2 670 555 307 64 21 chr3 11232784 11233113 -148366670 - ERVL-B4-int LTR ERVL -2861 2853 2511 2 670 555 273 239 3 chr3 11234462 11234767 -148365016 + Lx9 LINE L1 7261 7637 -7 2 670 402 134 0 0 chr3 11235282 11235349 -148364434 + (TA)n Simple_repeat Simple_repeat 2 68 0 2 670 23 54 0 0 chr3 11235349 11235386 -148364397 + AT_rich Low_complexity Low_complexity 1 37 0 2 670 24 53 0 0 chr3 11235400 11235438 -148364345 + AT_rich Low_complexity Low_complexity 1 38 0 2 670 1766 79 8 49 chr3 11236075 11236340 -148363443 + L1_Mus2 LINE L1 6311 6564 -2 2 670 4692 71 0 3 chr3 11236612 11237221 -148362562 - L1_Mus4 LINE L1 -3 6633 6027 2 670 246 167 0 0 chr3 11237899 11237953 -148361830 + Lx LINE L1 6594 6647 -7 2 670 202 338 0 24 chr3 11238368 11238450 -148361333 + MIRm SINE MIR 97 176 -100 2 670 2126 169 34 10 chr3 11238794 11239182 -148360601 + Lx4A LINE L1 6661 7057 -1 2 670 457 273 82 27 chr3 11239558 11239705 -148360078 + RSINE1 SINE B4 11 165 0 2 670 228 248 20 10 chr3 11239708 11239810 -148359973 + (CATATA)n Simple_repeat Simple_repeat 6 108 0 2 670 252 344 72 80 chr3 11240542 11240620 -148359163 + ORR1E LTR MaLR 3 77 -282 2 670 4563 56 0 0 chr3 11240620 11241188 -148358595 + L1Md_F2 LINE L1 6003 6570 -12 2 670 252 344 72 80 chr3 11241188 11241346 -148358437 + ORR1E LTR MaLR 78 237 -122 2 670 25 51 0 0 chr3 11243488 11243527 -148356256 + AT_rich Low_complexity Low_complexity 1 39 0 2 670 659 313 72 0 chr3 11243930 11244125 -148355658 - B3 SINE B2 0 216 8 2 670 434 285 77 63 chr3 11244187 11244525 -148355258 - MER57C2 LTR ERV1 -43 368 16 2 670 1531 313 65 46 chr3 11244905 11245392 -148354391 + RLTR26 LTR ERVK 1 513 -129 2 670 942 123 0 0 chr3 11245392 11245670 -148354113 + (CAG)n Simple_repeat Simple_repeat 1 278 0 2 670 1531 313 65 46 chr3 11245670 11245697 -148354086 + RLTR26 LTR ERVK 514 536 -106 2 670 315 105 0 0 chr3 11245697 11245754 -148354029 + (CAG)n Simple_repeat Simple_repeat 1 57 0 2 670 1531 313 65 46 chr3 11245754 11245866 -148353917 + RLTR26 LTR ERVK 537 642 0 2 670 16366 102 29 3 chr3 11246105 11247603 -148352180 + L1VL4 LINE L1 190 1695 -1864 2 670 279 54 0 0 chr3 11247603 11247640 -148352143 + (CAAA)n Simple_repeat Simple_repeat 4 40 0 2 670 16366 96 48 6 chr3 11247640 11249349 -148350434 + L1VL4 LINE L1 1696 3508 -51 2 670 3096 220 55 51 chr3 11249691 11251546 -148348237 + ORR1B1-int LTR MaLR 8 1759 -204 2 670 182 91 30 0 chr3 11251753 11251786 -148347997 + (CAAAA)n Simple_repeat Simple_repeat 3 36 0 2 670 282 326 53 18 chr3 11251786 11252011 -148347772 - L1MC1 LINE L1 -313 6020 5788 2 670 22 0 0 0 chr3 11252049 11252071 -148347712 + AT_rich Low_complexity Low_complexity 1 22 0 2 670 695 386 30 15 chr3 11252319 11252587 -148347196 - B4A SINE B4 -20 272 1 2 670 22 0 0 0 chr3 11253800 11253822 -148345961 + AT_rich Low_complexity Low_complexity 1 22 0 2 670 1557 81 187 0 chr3 11254919 11255165 -148344618 + L1_Mus3 LINE L1 6343 6634 -4 3 670 314 355 160 31 chr3 11255331 11255843 -148343940 - L1ME3B LINE L1 -317 5923 5346 3 670 431 271 33 49 chr3 11256201 11256383 -148343400 - Lx7 LINE L1 -21 7675 7416 3 670 198 0 0 0 chr3 11256383 11256405 -148343378 + (CA)n Simple_repeat Simple_repeat 2 23 0 3 670 251 295 72 63 chr3 11256405 11256554 -148343229 - Lx7 LINE L1 -281 7415 7271 3 670 387 0 0 0 chr3 11256610 11256653 -148343130 + (T)n Simple_repeat Simple_repeat 1 43 0 3 670 615 312 19 14 chr3 11257859 11258067 -148341716 - B3 SINE B2 -7 209 1 3 670 23 97 0 0 chr3 11258318 11258390 -148341393 + AT_rich Low_complexity Low_complexity 1 72 0 3 670 35 41 0 0 chr3 11258491 11258540 -148341243 + AT_rich Low_complexity Low_complexity 1 49 0 3 670 3605 184 4 52 chr3 11258769 11258883 -148340900 + L1_Mur1 LINE L1 5172 5263 -623 3 670 6107 68 4 17 chr3 11258883 11259709 -148340074 + L1Md_F2 LINE L1 5765 6579 -3 3 670 3605 184 4 52 chr3 11259709 11260324 -148339459 + L1_Mur1 LINE L1 5264 5866 -20 3 670 23 0 0 0 chr3 11260907 11260930 -148338853 + AT_rich Low_complexity Low_complexity 1 23 0 3 670 22 0 0 0 chr3 11261117 11261139 -148338644 + AT_rich Low_complexity Low_complexity 1 22 0 3 670 495 0 0 0 chr3 11262391 11262446 -148337337 + (TAGTG)n Simple_repeat Simple_repeat 3 57 0 3 670 639 0 0 0 chr3 11262448 11262519 -148337264 + (ATAGG)n Simple_repeat Simple_repeat 4 74 0 3 670 315 284 0 0 chr3 11263729 11263817 -148335966 + Lx8 LINE L1 6736 6823 -650 3 670 215 211 0 47 chr3 11263860 11263989 -148335794 + GA-rich Low_complexity Low_complexity 1 123 0 3 670 186 133 0 0 chr3 11264080 11264110 -148335673 + (TA)n Simple_repeat Simple_repeat 2 31 0 3 670 676 304 36 0 chr3 11265481 11265649 -148334134 - B4A SINE B4 -5 287 114 3 670 240 86 0 0 chr3 11266094 11266129 -148333654 + (TA)n Simple_repeat Simple_repeat 1 35 0 3 670 6524 149 14 9 chr3 11266261 11267415 -148332368 + L1_Mur1 LINE L1 3735 4894 -992 3 670 887 78 0 0 chr3 11267415 11267531 -148332252 + B1_Mus1 SINE Alu 31 146 -2 3 670 1555 39 19 10 chr3 11267539 11267745 -148332038 + L1Md_F3 LINE L1 6375 6582 -2 3 670 1063 150 30 0 chr3 11267758 11267801 -148331982 + L1_Mur1 LINE L1 4838 4880 -1006 3 670 180 0 0 0 chr3 11267801 11267821 -148331962 + (TTAA)n Simple_repeat Simple_repeat 4 23 0 3 670 1063 150 30 0 chr3 11267821 11267977 -148331806 + L1_Mur1 LINE L1 4881 5042 -844 3 670 21 36 0 0 chr3 11267983 11268011 -148331772 + AT_rich Low_complexity Low_complexity 1 28 0 3 670 340 242 175 58 chr3 11269077 11269248 -148330535 + RMER5 LTR ERV1 189 379 -155 3 670 982 126 11 0 chr3 11269761 11269852 -148329931 + (TTC)n Simple_repeat Simple_repeat 3 93 0 3 670 1347 34 17 0 chr3 11269852 11270029 -148329754 + (TCTCCC)n Simple_repeat Simple_repeat 1 180 0 3 670 982 126 11 0 chr3 11270029 11270111 -148329672 + (TTC)n Simple_repeat Simple_repeat 3 86 0 3 670 219 218 18 18 chr3 11270111 11270167 -148329616 + CT-rich Low_complexity Low_complexity 1 56 0 3 670 319 324 71 35 chr3 11270205 11270346 -148329437 - B1F2 SINE Alu -3 146 1 3 670 207 0 0 0 chr3 11270532 11270555 -148329228 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 3 670 22 0 0 0 chr3 11271616 11271638 -148328145 + AT_rich Low_complexity Low_complexity 1 22 0 3 670 755 246 47 71 chr3 11271694 11271991 -148327792 + RLTR12B LTR ERVK 18 307 -221 3 83 547 264 111 61 chr3 11271988 11272250 -148327533 + RLTR12B LTR ERVK 245 519 -9 3 671 358 350 151 8 chr3 11272478 11273002 -148326781 + L1M4c LINE L1 140 738 -5869 3 671 5069 131 75 0 chr3 11273195 11273913 -148325870 + Lx LINE L1 5760 6518 -136 3 671 186 43 0 0 chr3 11273913 11273936 -148325847 + (TGGG)n Simple_repeat Simple_repeat 3 25 0 3 671 5069 131 75 0 chr3 11273936 11274044 -148325739 + Lx LINE L1 6519 6647 -7 3 671 484 333 69 14 chr3 11274199 11274415 -148325368 + Tigger7 DNA MER2_type 43 270 -2221 3 671 1478 66 0 10 chr3 11274551 11274751 -148325032 + L1_Mus1 LINE L1 6368 6565 -2 3 671 440 269 129 29 chr3 11274760 11275032 -148324751 + L1M4c LINE L1 2491 2789 -3960 3 671 524 322 152 53 chr3 11275082 11275672 -148324111 + L1M4c LINE L1 3075 3742 -3005 3 671 271 319 53 66 chr3 11275672 11275823 -148323960 + B1F SINE Alu 1 149 0 3 671 524 322 152 53 chr3 11275823 11275898 -148323885 + L1M4c LINE L1 3743 3806 -2941 3 671 23 0 0 0 chr3 11275916 11275939 -148323844 + AT_rich Low_complexity Low_complexity 1 23 0 3 671 298 349 110 0 chr3 11277162 11277308 -148322475 - MIR SINE MIR -71 191 30 3 671 6894 74 2 2 chr3 11277564 11278468 -148321315 - L1_Mus2 LINE L1 0 6566 5663 3 671 381 284 0 0 chr3 11279295 11279390 -148320393 + RLTR23 LTR ERV1 8 102 -328 3 671 2597 243 53 65 chr3 11279561 11280355 -148319428 + RMER17B LTR ERVK 1 784 -174 3 671 350 291 43 91 chr3 11280368 11280576 -148319207 + RMER13B LTR ERVK 702 899 -9 3 671 231 133 0 0 chr3 11281791 11281836 -148317947 + (TTTA)n Simple_repeat Simple_repeat 4 48 0 3 671 4638 168 6 24 chr3 11282109 11282953 -148316830 + Lx2B LINE L1 6169 6997 -3 3 671 489 88 0 0 chr3 11283282 11283362 -148316421 + (GA)n Simple_repeat Simple_repeat 2 81 0 3 671 261 156 0 22 chr3 11284185 11284217 -148315566 + ID4_ SINE ID 39 70 -13 3 671 2096 121 44 0 chr3 11284217 11284532 -148315251 + ORR1A4 LTR MaLR 1 329 0 3 671 261 156 0 22 chr3 11284532 11284545 -148315238 + ID4_ SINE ID 71 83 0 3 671 421 191 9 9 chr3 11285442 11285558 -148314225 + (TA)n Simple_repeat Simple_repeat 1 116 0 3 671 222 62 0 0 chr3 11285598 11285630 -148314153 + (TG)n Simple_repeat Simple_repeat 2 33 0 3 671 991 104 0 0 chr3 11285697 11285831 -148313952 + B1_Mm SINE Alu 2 135 -12 3 671 222 379 15 68 chr3 11285968 11286101 -148313682 - ID_B1 SINE B4 -82 142 17 3 671 753 271 98 84 chr3 11286942 11287360 -148312423 + RLTR23 LTR ERV1 3 426 -4 3 671 2144 289 94 43 chr3 11287851 11289428 -148310355 + Lx9 LINE L1 1583 3239 -2608 3 671 21 95 0 0 chr3 11289453 11289516 -148310267 + AT_rich Low_complexity Low_complexity 1 63 0 3 671 3626 278 89 44 chr3 11289518 11289581 -148310202 + Lx9 LINE L1 3614 3667 -2180 3 671 2086 146 67 18 chr3 11289581 11289971 -148309812 - RLTR9E LTR ERVK 0 409 1 3 671 3626 278 89 44 chr3 11289971 11291225 -148308558 + Lx9 LINE L1 3668 4944 -903 3 671 196 53 26 26 chr3 11291225 11291264 -148308519 + (CAA)n Simple_repeat Simple_repeat 1 39 0 3 671 3626 278 89 44 chr3 11291264 11291700 -148308083 + Lx9 LINE L1 4945 5410 -437 3 671 3473 112 53 15 chr3 11291700 11292246 -148307537 + RMER2 LTR ERV1 1 567 0 3 671 3626 288 82 41 chr3 11292246 11292710 -148307073 + Lx9 LINE L1 5411 5971 -1673 3 671 184 149 0 41 chr3 11292943 11292992 -148306791 + (CATA)n Simple_repeat Simple_repeat 2 48 0 3 671 23 0 0 0 chr3 11293580 11293603 -148306180 + AT_rich Low_complexity Low_complexity 1 23 0 3 671 26 30 0 0 chr3 11293792 11293825 -148305958 + AT_rich Low_complexity Low_complexity 1 33 0 3 671 243 0 0 0 chr3 11294080 11294107 -148305676 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 3 671 21 36 0 0 chr3 11294280 11294308 -148305475 + AT_rich Low_complexity Low_complexity 1 28 0 3 671 5212 239 32 12 chr3 11294555 11295548 -148304235 - Lx5 LINE L1 -8 7042 6025 3 671 4820 79 12 3 chr3 11295548 11296205 -148303578 - L1_Mus2 LINE L1 0 6566 5904 3 671 5212 239 32 12 chr3 11296205 11296369 -148303414 - Lx5 LINE L1 -1026 6024 5862 3 671 246 385 11 0 chr3 11296523 11296614 -148303169 - MLT1A0 LTR MaLR -261 104 13 3 671 219 69 0 0 chr3 11297508 11297537 -148302246 + (CA)n Simple_repeat Simple_repeat 2 30 0 3 671 233 227 0 0 chr3 11297537 11297581 -148302202 + (TATATG)n Simple_repeat Simple_repeat 5 48 0 3 671 26 64 0 0 chr3 11298395 11298442 -148301341 + AT_rich Low_complexity Low_complexity 1 47 0 3 671 26 64 0 0 chr3 11298629 11298676 -148301107 + AT_rich Low_complexity Low_complexity 1 47 0 3 671 236 91 23 0 chr3 11300034 11300078 -148299705 + (GAAA)n Simple_repeat Simple_repeat 4 48 0 3 671 274 214 99 30 chr3 11300651 11300752 -148299031 - MT2A LTR ERVL 0 533 426 3 671 433 276 8 2 chr3 11301484 11301608 -148298175 - Lx6 LINE L1 -1705 5991 5868 3 671 2779 135 11 25 chr3 11301618 11302096 -148297687 - RLTR31B_Mm LTR ERVK -86 471 1 3 671 614 189 51 17 chr3 11302097 11302271 -148297512 - RMER3D-int LTR ERVK -1 2841 2676 3 671 702 285 111 37 chr3 11302302 11302626 -148297157 - RMER3D-int LTR ERVK -2478 364 17 3 671 1555 105 8 25 chr3 11302708 11302952 -148296831 - RLTR31B_Mm LTR ERVK -317 240 1 3 671 2873 182 16 4 chr3 11302961 11303469 -148296314 + RMER20A LTR ERVK 1 514 -2 3 671 4072 280 67 35 chr3 11303490 11303859 -148295924 + Lx6 LINE L1 5991 6391 -1069 3 671 525 55 0 0 chr3 11303859 11303932 -148295851 + (TG)n Simple_repeat Simple_repeat 1 73 0 3 671 4072 280 67 35 chr3 11303932 11304929 -148294854 + Lx6 LINE L1 6392 7401 -59 3 671 30 0 0 0 chr3 11305119 11305149 -148294634 + AT_rich Low_complexity Low_complexity 1 30 0 3 671 561 338 69 9 chr3 11305270 11305488 -148294295 - B4A SINE B4 -18 274 44 3 671 25 51 0 0 chr3 11306028 11306067 -148293716 + AT_rich Low_complexity Low_complexity 1 39 0 3 671 31 68 0 0 chr3 11306136 11306195 -148293588 + AT_rich Low_complexity Low_complexity 1 59 0 3 671 282 56 0 0 chr3 11306654 11306690 -148293093 + (TTTG)n Simple_repeat Simple_repeat 3 38 0 3 671 23 0 0 0 chr3 11307149 11307172 -148292611 + AT_rich Low_complexity Low_complexity 1 23 0 3 671 22 0 0 0 chr3 11307529 11307551 -148292232 + AT_rich Low_complexity Low_complexity 1 22 0 3 671 1055 231 87 46 chr3 11307700 11308067 -148291716 + ORR1C2 LTR MaLR 1 382 -2 3 671 1905 220 59 85 chr3 11308140 11308682 -148291101 + RMER19C LTR ERVK 1 528 -83 3 671 685 340 53 21 chr3 11308824 11309668 -148290115 - L1M2 LINE L1 -513 5778 4903 3 671 297 0 0 0 chr3 11309852 11309885 -148289898 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 3 671 787 186 176 0 chr3 11309895 11310083 -148289700 - URR1B DNA MER1_type 0 225 5 3 671 186 103 0 0 chr3 11310297 11310326 -148289457 + (TTCA)n Simple_repeat Simple_repeat 4 32 0 3 671 394 233 100 0 chr3 11310348 11310468 -148289315 + Lx6 LINE L1 7109 7240 -220 3 671 890 174 104 6 chr3 11311043 11311216 -148288567 - RLTR28B LTR ERVL -3 478 289 3 671 2705 171 18 8 chr3 11311218 11311537 -148288246 - L1_Mm LINE L1 -15 5868 5548 3 671 4149 38 6 2 chr3 11311537 11312039 -148287744 - L1Md_F3 LINE L1 0 6584 6081 3 671 2705 171 18 8 chr3 11312039 11312208 -148287575 - L1_Mm LINE L1 -336 5547 5376 3 671 5213 114 0 4 chr3 11312208 11312981 -148286802 + Lx LINE L1 5879 6648 -6 3 671 1589 192 10 0 chr3 11312993 11313290 -148286493 - RLTR28B LTR ERVL -181 300 1 3 671 526 14 28 0 chr3 11313591 11313662 -148286121 + (TCTA)n Simple_repeat Simple_repeat 3 75 0 3 671 2155 247 17 26 chr3 11314217 11314411 -148285372 + RMER15 LTR ERVL 1 191 -384 4 671 180 0 0 0 chr3 11314411 11314431 -148285352 + (TA)n Simple_repeat Simple_repeat 2 21 0 4 671 2155 247 17 26 chr3 11314431 11314814 -148284969 + RMER15 LTR ERVL 192 573 -2 4 671 3054 281 110 19 chr3 11314816 11315998 -148283785 + RMER15-int LTR ERVL 1 1302 -3697 4 671 279 0 0 0 chr3 11315998 11316029 -148283754 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 4 671 3054 291 80 20 chr3 11316029 11316097 -148283686 + RMER15-int LTR ERVL 1303 1362 -3637 4 671 477 323 65 5 chr3 11316111 11316310 -148283473 + RMER15-int LTR ERVL 1431 1641 -3358 4 671 333 248 29 94 chr3 11316855 11316993 -148282790 - RLTR23 LTR ERV1 -2 428 300 4 671 836 288 28 28 chr3 11316990 11317272 -148282511 + RLTR22_Mur LTR ERVK 395 676 -1172 4 671 639 223 0 0 chr3 11317272 11317420 -148282363 + (TATG)n Simple_repeat Simple_repeat 2 149 0 4 671 461 239 80 53 chr3 11317422 11317572 -148282211 + RLTR22_Mur LTR ERVK 663 816 -1032 4 671 271 238 94 47 chr3 11317651 11317757 -148282026 + RLTR22_Mur LTR ERVK 1590 1700 -148 4 671 3297 48 2 0 chr3 11317889 11318284 -148281499 - MTA_Mm LTR MaLR 0 396 1 4 671 230 0 33 0 chr3 11319259 11319289 -148280494 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 4 671 260 350 25 0 chr3 11319585 11319665 -148280118 - RLTR19-int LTR ERVK -1680 4457 4376 4 671 955 289 29 53 chr3 11319863 11320239 -148279544 - RLTR4_MM-int LTR ERV1 -2311 5290 4924 4 671 452 320 62 9 chr3 11320232 11320443 -148279340 + RMER15-int LTR ERVL 2105 2326 -2673 4 671 396 0 0 0 chr3 11320485 11320529 -148279254 + (CA)n Simple_repeat Simple_repeat 1 44 0 4 671 3569 235 40 18 chr3 11320531 11321375 -148278408 + RMER15-int LTR ERVL 2402 3264 -1735 4 671 978 111 7 40 chr3 11321379 11321529 -148278254 + B1_Mm SINE Alu 2 146 -1 4 671 2093 237 24 58 chr3 11321564 11322155 -148277628 + RMER15-int LTR ERVL 3250 3820 -1179 4 671 3117 286 33 32 chr3 11322185 11322655 -148277128 + RMER15-int LTR ERVL 3813 4282 -717 4 671 2263 109 98 27 chr3 11322655 11323031 -148276752 - RLTR9D LTR ERVK 0 403 1 4 671 3117 272 109 28 chr3 11323031 11323660 -148276123 + RMER15-int LTR ERVL 4283 4963 -36 4 671 1106 202 224 15 chr3 11323665 11324140 -148275643 + RMER15 LTR ERVL 1 575 0 4 671 234 0 0 0 chr3 11325332 11325358 -148274425 + (T)n Simple_repeat Simple_repeat 1 26 0 4 671 183 349 23 11 chr3 11325542 11325629 -148274154 + MIR SINE MIR 59 146 -116 4 671 21 0 0 0 chr3 11325655 11325676 -148274107 + AT_rich Low_complexity Low_complexity 1 21 0 4 671 553 38 38 0 chr3 11325738 11325817 -148273966 + (TCTA)n Simple_repeat Simple_repeat 4 85 0 4 671 206 279 112 34 chr3 11326113 11326202 -148273581 + L2c LINE L2 3273 3368 -19 4 671 26 0 0 0 chr3 11328465 11328491 -148271292 + AT_rich Low_complexity Low_complexity 1 26 0 4 671 1811 191 62 24 chr3 11328520 11328943 -148270840 + RMER17B LTR ERVK 1 439 -519 4 671 1862 238 91 37 chr3 11328956 11329550 -148270233 + RMER13B LTR ERVK 274 899 -9 4 671 398 329 25 50 chr3 11329566 11329726 -148270057 - RSINE1 SINE B4 -1 164 9 4 671 792 103 17 0 chr3 11329840 11330072 -148269711 + (TCTA)n Simple_repeat Simple_repeat 1 235 0 4 671 28900 13 2 0 chr3 11330318 11335373 -148264410 - L1Md_A LINE L1 0 6582 1521 4 671 1231 301 179 40 chr3 11336973 11337519 -148262264 - Tigger1 DNA MER2_type -7 2411 1824 4 671 441 0 0 0 chr3 11337519 11337568 -148262215 + (GA)n Simple_repeat Simple_repeat 2 50 0 4 671 1231 301 179 40 chr3 11337568 11337924 -148261859 - Tigger1 DNA MER2_type -595 1823 1383 4 671 435 268 26 26 chr3 11337931 11338046 -148261737 + Lx6 LINE L1 7091 7205 -255 4 671 352 81 0 0 chr3 11338049 11338111 -148261672 - L1Md_F3 LINE L1 -1 6583 6522 4 671 1099 83 0 0 chr3 11338188 11338323 -148261460 + B1_Mus2 SINE Alu 1 135 -12 4 671 639 39 0 0 chr3 11338323 11338401 -148261382 + (GAAA)n Simple_repeat Simple_repeat 3 80 0 4 671 31 0 0 0 chr3 11338475 11338506 -148261277 + AT_rich Low_complexity Low_complexity 1 31 0 4 671 327 85 0 0 chr3 11338520 11338567 -148261216 + (TG)n Simple_repeat Simple_repeat 1 47 0 4 671 299 373 8 8 chr3 11338594 11338713 -148261070 - B3A SINE B2 -78 120 2 4 671 366 368 16 16 chr3 11338730 11338918 -148260865 - Tigger1 DNA MER2_type -1121 1297 1110 4 671 4276 60 9 4 chr3 11339807 11340357 -148259426 + L1_Mus1 LINE L1 6011 6563 -4 4 671 276 30 0 0 chr3 11340357 11340390 -148259393 + (CA)n Simple_repeat Simple_repeat 2 34 0 4 671 22 0 0 0 chr3 11341872 11341894 -148257889 + AT_rich Low_complexity Low_complexity 1 22 0 4 671 213 285 28 7 chr3 11342112 11342257 -148257526 + (TA)n Simple_repeat Simple_repeat 2 149 0 4 671 180 77 0 0 chr3 11342402 11342428 -148257355 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 4 671 1983 224 29 16 chr3 11342455 11342831 -148256952 + Lx5 LINE L1 6634 7014 -36 4 671 247 131 71 14 chr3 11344822 11344892 -148254891 + (TTATA)n Simple_repeat Simple_repeat 5 78 0 4 671 261 0 0 0 chr3 11344944 11344973 -148254810 + (CA)n Simple_repeat Simple_repeat 2 30 0 4 671 675 154 0 0 chr3 11345579 11345696 -148254087 + (TA)n Simple_repeat Simple_repeat 1 117 0 4 671 1282 238 107 3 chr3 11346606 11346952 -148252831 - ORR1C2 LTR MaLR -2 382 1 4 671 208 117 0 77 chr3 11346958 11347023 -148252760 + (TTTA)n Simple_repeat Simple_repeat 2 61 0 4 671 307 303 60 10 chr3 11347657 11347757 -148252026 + RMER15 LTR ERVL 452 556 -19 4 671 710 250 47 54 chr3 11348197 11348455 -148251328 + RLTR40 LTR ERVK 19 274 -543 4 671 1088 226 104 71 chr3 11348465 11348945 -148250838 - RMER6A LTR ERVK -37 719 309 4 671 19752 159 26 72 chr3 11348945 11352183 -148247600 - L1_Mus1 LINE L1 -83 6484 3213 4 671 1752 116 44 19 chr3 11352183 11352500 -148247283 - IAPEY_LTR LTR ERVK -6 379 55 4 671 19752 159 26 72 chr3 11352500 11354259 -148245524 - L1_Mus1 LINE L1 -83 3212 1433 4 671 348 103 0 0 chr3 11354260 11354318 -148245465 + (CA)n Simple_repeat Simple_repeat 1 58 0 4 671 270 0 0 0 chr3 11354318 11354347 -148245436 + (GA)n Simple_repeat Simple_repeat 2 31 0 4 671 455 249 272 23 chr3 11354820 11354993 -148244790 - B3 SINE B2 0 216 1 4 671 728 305 112 101 chr3 11355603 11356077 -148243706 - MLT1-int LTR MaLR -13 1358 880 4 671 501 47 0 0 chr3 11356103 11356167 -148243616 + (TCTA)n Simple_repeat Simple_repeat 3 66 0 4 671 1265 56 6 0 chr3 11356196 11356375 -148243408 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 4 671 1640 88 37 12 chr3 11357052 11357294 -148242489 - L1_Mus1 LINE L1 0 6567 6320 4 671 6966 80 2 1 chr3 11357916 11358859 -148240924 + L1Md_F2 LINE L1 4642 5585 -298 4 671 6976 69 42 19 chr3 11358860 11359831 -148239952 + L1Md_F2 LINE L1 5587 6580 -2 4 671 3774 124 3 20 chr3 11359861 11360452 -148239331 + Lx LINE L1 6058 6638 -16 4 671 324 0 0 0 chr3 11360457 11360493 -148239290 + (GA)n Simple_repeat Simple_repeat 1 36 0 4 671 237 98 0 0 chr3 11361320 11361361 -148238422 + (TA)n Simple_repeat Simple_repeat 1 41 0 4 671 358 244 24 12 chr3 11362952 11363035 -148236748 - PB1D10 SINE Alu -32 85 2 4 671 227 273 21 83 chr3 11362954 11363050 -148236733 - MT2B2 LTR ERVL -343 241 152 4 671 180 0 0 0 chr3 11363671 11363691 -148236092 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 4 671 291 28 0 0 chr3 11363719 11363755 -148236028 + (CCAA)n Simple_repeat Simple_repeat 4 39 0 4 671 286 272 108 40 chr3 11364000 11364168 -148235615 + L1M2 LINE L1 2550 2751 -3389 4 671 877 326 94 27 chr3 11364207 11365283 -148234500 + L1M2 LINE L1 3225 4372 -1771 4 671 215 171 12 106 chr3 11365301 11365386 -148234397 + A-rich Low_complexity Low_complexity 4 80 0 4 671 337 285 61 8 chr3 11365558 11365689 -148234094 + L1_Mur2 LINE L1 4436 4573 -1304 4 671 323 305 33 28 chr3 11365743 11365925 -148233858 + L1M2 LINE L1 4825 5007 -1136 4 671 605 276 86 50 chr3 11366056 11366277 -148233506 - Lx9 LINE L1 -1097 6547 6319 4 671 30 59 0 0 chr3 11366333 11366384 -148233399 + AT_rich Low_complexity Low_complexity 1 51 0 4 671 26 30 0 0 chr3 11367237 11367270 -148232513 + AT_rich Low_complexity Low_complexity 1 33 0 4 671 33211 72 1 13 chr3 11367350 11372700 -148227083 + L1Md_F2 LINE L1 301 5585 -298 4 671 7680 62 2 6 chr3 11372701 11373697 -148226086 + L1Md_F2 LINE L1 5587 6578 -4 4 671 195 42 0 0 chr3 11374134 11374158 -148225625 + (CATA)n Simple_repeat Simple_repeat 4 27 0 4 671 1358 87 0 44 chr3 11374163 11374229 -148225554 + L1_Mus1 LINE L1 6220 6285 -282 4 671 2221 155 7 29 chr3 11374229 11374647 -148225136 + RLTR9E LTR ERVK 1 409 0 4 671 1358 114 58 111 chr3 11374647 11374872 -148224911 + L1_Mus1 LINE L1 6286 6462 -176 4 671 1094 88 0 7 chr3 11374872 11375020 -148224763 - B1_Mus1 SINE Alu -1 147 1 4 671 1097 155 149 214 chr3 11375020 11375170 -148224613 + L1_Mus1 LINE L1 6463 6633 -5 4 671 31 68 0 0 chr3 11375956 11376015 -148223768 + AT_rich Low_complexity Low_complexity 1 59 0 4 671 26 64 0 0 chr3 11376852 11376899 -148222884 + AT_rich Low_complexity Low_complexity 1 47 0 4 671 651 103 0 0 chr3 11376995 11377092 -148222691 + (TC)n Simple_repeat Simple_repeat 2 98 0 4 671 2999 63 10 15 chr3 11377444 11377879 -148221904 + L1Md_F2 LINE L1 6165 6582 0 4 671 502 326 66 53 chr3 11378154 11378381 -148221402 - B4A SINE B4 -8 284 55 4 671 1250 150 81 4 chr3 11378383 11378617 -148221166 + RMER6B LTR ERVK 1 252 -209 4 671 1280 187 25 36 chr3 11378626 11378903 -148220880 - RLTR46 LTR ERVK -5 315 42 4 671 912 197 18 65 chr3 11378914 11379131 -148220652 + RMER6B LTR ERVK 255 461 0 4 671 24 0 0 0 chr3 11379403 11379427 -148220356 + AT_rich Low_complexity Low_complexity 1 24 0 4 671 2392 141 54 16 chr3 11380275 11380716 -148219067 - Lx3B LINE L1 -7 6966 6509 4 671 302 295 36 0 chr3 11380768 11380880 -148218903 + Tigger5 DNA MER2_type 2291 2406 0 4 671 241 333 25 33 chr3 11380906 11381027 -148218756 + MER33 DNA MER1_type 1 120 -204 4 671 183 276 17 17 chr3 11381110 11381169 -148218614 + L2 LINE L2 2840 2898 -521 4 671 227 379 29 0 chr3 11381692 11381795 -148217988 - Tigger5 DNA MER2_type -2235 171 66 4 671 38063 59 5 8 chr3 11381805 11388216 -148211567 - L1Md_T LINE L1 0 6582 186 4 671 2091 102 15 24 chr3 11388411 11388622 -148211161 + L1_Mus4 LINE L1 5983 6194 -442 4 671 3884 148 55 40 chr3 11388622 11389060 -148210723 + RMER17D2 LTR ERVK 1 445 -364 4 671 303 49 0 0 chr3 11389060 11389101 -148210682 + (TCTCTG)n Simple_repeat Simple_repeat 2 42 0 4 671 3884 148 55 40 chr3 11389101 11389459 -148210324 + RMER17D2 LTR ERVK 446 808 -1 4 671 2091 102 15 24 chr3 11389459 11389578 -148210205 + L1_Mus4 LINE L1 6195 6310 -326 4 671 21 36 0 0 chr3 11389597 11389625 -148210158 + AT_rich Low_complexity Low_complexity 1 28 0 4 671 1651 91 55 16 chr3 11389763 11390019 -148209764 - L1_Mus4 LINE L1 -6 6630 6365 4 671 796 178 12 6 chr3 11390022 11390192 -148209591 + CT-rich Low_complexity Low_complexity 3 173 0 4 671 1056 113 0 0 chr3 11390206 11390348 -148209435 - B1_Mus2 SINE Alu -5 142 1 4 671 238 50 50 0 chr3 11390707 11390747 -148209036 + (TTTG)n Simple_repeat Simple_repeat 2 43 0 4 671 368 284 127 77 chr3 11390749 11390970 -148208813 - B4A SINE B4 0 292 61 4 671 1657 93 8 20 chr3 11391520 11391773 -148208010 - L1Md_F2 LINE L1 -6 6576 6327 4 671 408 185 0 0 chr3 11392157 11392222 -148207561 + B1_Mus1 SINE Alu 1 65 -83 4 671 401 300 144 17 chr3 11392757 11392930 -148206853 + MIR SINE MIR 34 228 -34 5 671 625 221 114 0 chr3 11394090 11394230 -148205553 + ORR1D1 LTR MaLR 1 156 -218 5 671 244 320 73 70 chr3 11394764 11395036 -148204747 - MTEb LTR MaLR -14 365 93 5 671 19907 173 15 22 chr3 11395650 11397945 -148201838 + Lx LINE L1 356 2476 -3410 5 671 2361 66 119 11 chr3 11397945 11398297 -148201486 - RLTR10 LTR ERVK 0 390 1 5 671 19907 182 19 34 chr3 11398297 11402552 -148197231 + Lx LINE L1 2477 6654 0 5 671 521 189 171 0 chr3 11402707 11402818 -148196965 - B1_Mur2 SINE Alu -7 142 13 5 672 261 372 138 0 chr3 11403980 11404125 -148195658 + MER5A DNA MER1_type 1 165 -24 5 672 21 0 0 0 chr3 11404217 11404238 -148195545 + AT_rich Low_complexity Low_complexity 1 21 0 5 672 6467 120 10 12 chr3 11404683 11406007 -148193776 + L1_Mus3 LINE L1 5317 6638 0 5 672 3983 139 77 35 chr3 11406168 11406500 -148193283 + RMER17D2 LTR ERVK 1 330 -479 5 672 1019 128 12 0 chr3 11406500 11406672 -148193111 + (TCTCC)n Simple_repeat Simple_repeat 3 176 0 5 672 3983 139 77 35 chr3 11406672 11407115 -148192668 + RMER17D2 LTR ERVK 331 808 -1 5 672 1161 245 45 30 chr3 11407384 11407729 -148192054 + MTC LTR MaLR 36 419 -2 5 672 1734 231 76 7 chr3 11407733 11408168 -148191615 + MTC-int LTR MaLR 8 472 -786 5 672 15139 109 7 6 chr3 11408200 11411372 -148188411 + L1_Mus1 LINE L1 3392 6564 -3 5 672 3359 187 22 71 chr3 11411388 11412175 -148187608 + MTC-int LTR MaLR 506 1253 -5 5 672 1238 243 90 23 chr3 11412180 11412525 -148187258 + MTC LTR MaLR 1 368 -53 5 672 2638 123 39 21 chr3 11412559 11412990 -148186793 + RLTR19B LTR ERVK 1 439 -276 5 672 4054 83 3 38 chr3 11412993 11413592 -148186191 + L1_Mus2 LINE L1 5988 6565 -1 5 672 456 92 0 0 chr3 11413609 11413674 -148186109 - L1_Mus4 LINE L1 -956 5680 5616 5 672 6258 175 19 0 chr3 11413674 11414783 -148185000 - L1_Mm LINE L1 -1618 4265 3133 5 672 207 0 0 0 chr3 11414783 11414806 -148184977 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 5 672 6258 175 19 0 chr3 11414806 11414985 -148184798 - L1_Mm LINE L1 -2751 3132 2954 5 672 32623 50 14 28 chr3 11414984 11419456 -148180327 + L1Md_F LINE L1 474 4933 -950 5 672 225 183 46 77 chr3 11419456 11419521 -148180262 - RMER20A LTR ERVK -268 248 186 5 672 32623 50 14 28 chr3 11419521 11420174 -148179609 + L1Md_F LINE L1 4934 5586 -297 5 672 8312 40 0 1 chr3 11420174 11421171 -148178612 + L1Md_A LINE L1 5587 6582 0 5 672 10075 122 14 2 chr3 11421173 11422045 -148177738 - L1VL2 LINE L1 -955 2660 1784 5 672 194 0 0 37 chr3 11422045 11422072 -148177711 + (TTTTG)n Simple_repeat Simple_repeat 4 29 0 5 672 10075 127 13 5 chr3 11422072 11423141 -148176642 - L1VL2 LINE L1 -1832 1783 702 5 672 1070 228 8 12 chr3 11423138 11423378 -148176405 - RMER1B Other Other -272 794 556 5 672 1414 251 18 18 chr3 11423360 11423700 -148176083 - RMER1B Other Other -684 382 43 5 672 879 102 0 45 chr3 11423900 11424034 -148175749 - B1_Mus1 SINE Alu -20 128 1 5 672 21 57 0 0 chr3 11424528 11424563 -148175220 + AT_rich Low_complexity Low_complexity 1 35 0 5 672 299 376 104 16 chr3 11424748 11424940 -148174843 - MLT1E2 LTR MaLR -189 438 230 5 672 22 0 0 0 chr3 11425677 11425699 -148174084 + AT_rich Low_complexity Low_complexity 1 22 0 5 672 917 227 82 5 chr3 11425881 11426255 -148173528 + L1_Mur2 LINE L1 888 1226 -5860 5 672 268 261 0 0 chr3 11426266 11426331 -148173452 + A-rich Low_complexity Low_complexity 1 65 0 5 672 3614 212 51 139 chr3 11426376 11427170 -148172613 + L1_Mur2 LINE L1 1206 1995 -3885 5 672 1204 48 0 14 chr3 11427170 11427318 -148172465 + B1_Mm SINE Alu 2 147 0 5 672 3614 212 51 139 chr3 11427318 11427388 -148172395 + L1_Mur2 LINE L1 1996 2021 -3859 5 672 3554 83 2 0 chr3 11427388 11427859 -148171924 + L1_Mus2 LINE L1 6094 6565 -1 5 672 3614 212 51 139 chr3 11427859 11428052 -148171731 + L1_Mur2 LINE L1 2022 2109 -3771 5 672 1908 159 14 6 chr3 11428052 11428407 -148171376 + RLTR15 LTR ERVK 1 358 -1 5 672 3614 212 51 139 chr3 11428407 11429044 -148170739 + L1_Mur2 LINE L1 2110 2752 -3128 5 672 531 179 160 0 chr3 11429054 11429160 -148170623 + B3 SINE B2 5 127 -89 5 672 1594 113 76 4 chr3 11429169 11429418 -148170365 - RLTR22_Mur LTR ERVK -1581 267 1 5 672 437 321 29 29 chr3 11429418 11429591 -148170192 + RMER20A LTR ERVK 344 516 0 5 672 1599 209 29 14 chr3 11429591 11430004 -148169779 + L1_Mur2 LINE L1 4013 4431 -1449 5 672 6856 113 2 1 chr3 11430006 11431774 -148168009 - L1_Mus1 LINE L1 0 6567 4798 5 672 6378 186 40 5 chr3 11431765 11433122 -148166661 - L1_Mur1 LINE L1 -145 5741 4338 5 672 2041 182 47 0 chr3 11433111 11433555 -148166228 + Lx LINE L1 3386 3850 -2027 5 672 6228 185 5 70 chr3 11433552 11434371 -148165412 + Lx LINE L1 4917 5669 -985 5 672 8019 49 0 2 chr3 11434371 11435368 -148164415 + L1Md_F2 LINE L1 5587 6581 -1 5 672 6228 126 13 47 chr3 11435368 11436344 -148163439 + Lx LINE L1 5670 6653 -1 5 672 4351 218 120 9 chr3 11436352 11437581 -148162202 + Lx5 LINE L1 4440 5805 -75 5 672 3680 151 17 8 chr3 11437581 11437992 -148161791 - MT2B LTR ERVL 0 601 189 5 672 225 0 0 0 chr3 11437992 11438017 -148161766 + (TATG)n Simple_repeat Simple_repeat 3 27 0 5 672 3680 151 17 8 chr3 11438017 11438081 -148161702 - MT2B LTR ERVL -413 188 118 5 672 4724 78 49 1 chr3 11438081 11438737 -148161046 + Lx3_Mus LINE L1 6320 7006 -3 5 672 3680 151 17 8 chr3 11438737 11438856 -148160927 - MT2B LTR ERVL -484 117 2 5 672 488 232 40 24 chr3 11438856 11439031 -148160752 + Lx5 LINE L1 5802 5980 -1716 5 672 3784 117 47 58 chr3 11439044 11439787 -148159996 - RMER17A LTR ERVK -16 735 1 5 672 1444 289 116 32 chr3 11439787 11440413 -148159370 + Lx5 LINE L1 5944 6605 -445 5 672 2492 131 5 5 chr3 11440413 11440829 -148158954 + L1_Mus4 LINE L1 6233 6636 0 5 672 1444 289 116 32 chr3 11440829 11441000 -148158783 + Lx5 LINE L1 6606 6808 -242 5 672 22 0 0 0 chr3 11441307 11441329 -148158454 + AT_rich Low_complexity Low_complexity 1 22 0 5 672 3212 67 0 0 chr3 11441329 11441733 -148158050 - L1_Mus1 LINE L1 -1 6566 6163 5 672 880 218 154 16 chr3 11441819 11442131 -148157652 - L1_Mur3 LINE L1 -2174 3706 3352 5 672 21 36 0 0 chr3 11442131 11442159 -148157624 + AT_rich Low_complexity Low_complexity 1 28 0 5 672 3862 253 43 9 chr3 11442185 11443167 -148156616 + Lx6 LINE L1 6396 7410 -50 5 672 21 57 0 0 chr3 11443417 11443452 -148156331 + AT_rich Low_complexity Low_complexity 1 35 0 5 672 24 32 0 0 chr3 11443660 11443691 -148156092 + AT_rich Low_complexity Low_complexity 1 31 0 5 672 21 36 0 0 chr3 11443748 11443776 -148156007 + AT_rich Low_complexity Low_complexity 1 28 0 5 672 963 294 5 51 chr3 11444018 11444391 -148155392 - Lx9 LINE L1 -615 7029 6674 5 672 1852 236 86 5 chr3 11444391 11444961 -148154822 + Lx9 LINE L1 7029 7644 0 5 672 405 0 0 0 chr3 11444961 11445006 -148154777 + (GAAAA)n Simple_repeat Simple_repeat 1 45 0 5 672 633 90 0 0 chr3 11445026 11445115 -148154668 + (TTTCC)n Simple_repeat Simple_repeat 3 91 0 5 672 960 169 0 0 chr3 11445126 11445304 -148154479 + CT-rich Low_complexity Low_complexity 1 178 0 5 672 265 185 74 0 chr3 11445422 11445503 -148154280 - Lx9 LINE L1 -5 7639 7553 5 672 241 355 13 13 chr3 11445528 11445605 -148154178 - B3A SINE B2 -121 77 1 5 672 1405 151 0 4 chr3 11445633 11445866 -148153917 - L1_Mus4 LINE L1 -14 6622 6391 5 672 3093 127 0 11 chr3 11445866 11446258 -148153525 + L1_Mus4 LINE L1 5926 6313 -323 5 672 3908 109 191 20 chr3 11446258 11447017 -148152766 - RMER17D LTR ERVK 0 889 1 5 672 3093 127 0 11 chr3 11447017 11447102 -148152681 + L1_Mus4 LINE L1 6314 6398 -238 5 672 3014 131 14 31 chr3 11447343 11447855 -148151928 + Lx LINE L1 6140 6642 -12 5 672 315 0 0 0 chr3 11447858 11447893 -148151890 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 5 672 189 0 0 0 chr3 11448015 11448036 -148151747 + (TTTA)n Simple_repeat Simple_repeat 1 21 0 5 672 768 77 0 0 chr3 11448068 11448172 -148151611 + (TATATG)n Simple_repeat Simple_repeat 4 107 0 5 672 1407 205 80 32 chr3 11448172 11448485 -148151298 - Lx4A LINE L1 -23 7035 6708 5 672 733 251 43 65 chr3 11449048 11449278 -148150505 - URR1B DNA MER1_type 0 225 1 5 672 23 68 0 0 chr3 11449431 11449475 -148150308 + AT_rich Low_complexity Low_complexity 1 44 0 5 672 31060 89 15 2 chr3 11449477 11454413 -148145370 + L1Md_F LINE L1 584 5586 -297 5 672 6934 70 43 11 chr3 11454413 11455366 -148144417 + L1Md_F2 LINE L1 5587 6570 -12 5 672 300 53 0 0 chr3 11455458 11455496 -148144287 + (TG)n Simple_repeat Simple_repeat 1 38 0 5 672 492 347 14 91 chr3 11456346 11456555 -148143228 - B4 SINE B4 -18 274 82 5 672 954 307 85 14 chr3 11456561 11456915 -148142868 - MTEa LTR MaLR 0 379 1 5 672 234 0 0 0 chr3 11457469 11457495 -148142288 + (T)n Simple_repeat Simple_repeat 1 26 0 5 672 461 175 19 0 chr3 11457952 11458055 -148141728 + Lx2 LINE L1 6836 6940 -57 5 672 858 208 149 31 chr3 11458497 11458725 -148141058 - RLTR22_Mur LTR ERVK -6 1842 1588 5 672 240 149 0 0 chr3 11459209 11459256 -148140527 + (GA)n Simple_repeat Simple_repeat 2 48 0 5 672 282 211 59 15 chr3 11459401 11459536 -148140247 + (TA)n Simple_repeat Simple_repeat 1 141 0 5 672 1496 52 0 15 chr3 11461267 11461464 -148138319 - L1_Mus1 LINE L1 0 6567 6374 5 672 956 137 0 14 chr3 11461519 11461656 -148138127 + B1_Mus1 SINE Alu 3 138 -10 5 672 312 27 0 0 chr3 11461656 11461693 -148138090 + (GAAAA)n Simple_repeat Simple_repeat 4 40 0 5 672 447 68 0 0 chr3 11461703 11461762 -148138021 + (GGAA)n Simple_repeat Simple_repeat 2 60 0 5 672 458 314 91 46 chr3 11462657 11463614 -148136169 - L1MA4A LINE L1 -386 5917 4861 5 672 42 48 0 0 chr3 11463627 11463690 -148136093 + AT_rich Low_complexity Low_complexity 1 63 0 5 672 410 352 84 11 chr3 11463759 11464046 -148135737 - L1MA4A LINE L1 -1386 4757 4450 5 672 383 217 328 39 chr3 11464259 11464448 -148135335 - Lx9 LINE L1 -3 7641 7398 5 672 226 327 94 47 chr3 11464501 11464713 -148135070 - MTEb LTR MaLR -157 222 1 5 672 269 323 10 0 chr3 11464867 11464966 -148134817 + MLT1A1 LTR MaLR 36 135 -273 5 672 2408 251 93 19 chr3 11465393 11466112 -148133671 + Lx9 LINE L1 6406 7177 -467 5 672 551 273 65 38 chr3 11466421 11466684 -148133099 - Lx7 LINE L1 -4 7692 7423 5 672 11426 106 33 12 chr3 11467577 11470450 -148129333 - Lx3_Mus LINE L1 -8 7001 4059 5 672 3024 107 47 0 chr3 11471059 11471506 -148128277 - L1_Mus3 LINE L1 -2 6636 6169 5 672 2336 85 9 0 chr3 11471506 11471836 -148127947 + L1_Mus3 LINE L1 5665 5997 -641 5 672 1723 79 0 0 chr3 11471841 11472081 -148127702 - IAPEY3_LTR LTR ERVK -92 240 1 5 672 1255 142 5 0 chr3 11472081 11472278 -148127505 + L1_Mus3 LINE L1 5992 6189 -449 5 672 7617 67 1 4 chr3 11472775 11473760 -148126023 - L1Md_F2 LINE L1 -1 6581 5600 5 672 399 368 25 31 chr3 11473760 11473920 -148125863 - B3A SINE B2 -36 162 4 5 672 207 0 0 0 chr3 11474153 11474176 -148125607 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 5 672 957 112 0 0 chr3 11474179 11474313 -148125470 - B1_Mm SINE Alu -12 135 2 5 672 27 29 0 0 chr3 11474387 11474421 -148125362 + AT_rich Low_complexity Low_complexity 1 34 0 5 672 342 0 0 0 chr3 11474947 11474985 -148124798 + (TG)n Simple_repeat Simple_repeat 2 39 0 5 672 465 333 60 106 chr3 11475399 11475954 -148123829 + MLT1H-int LTR MaLR 193 721 -688 5 672 901 336 52 52 chr3 11476714 11476853 -148122930 - Lx7 LINE L1 -433 7263 7129 6 672 916 117 6 6 chr3 11476853 11477017 -148122766 + (TTTCG)n Simple_repeat Simple_repeat 3 166 0 6 672 901 336 52 52 chr3 11477017 11477490 -148122293 - Lx7 LINE L1 -568 7128 6651 6 672 2053 166 78 32 chr3 11477452 11477913 -148121870 + Lx4B LINE L1 6577 7058 0 6 672 11449 114 12 2 chr3 11477965 11479959 -148119824 - L1_Mus1 LINE L1 -487 6080 4063 6 672 8629 168 29 56 chr3 11479950 11482472 -148117311 - L1_Mus1 LINE L1 -3351 2532 220 6 672 419 330 35 15 chr3 11482539 11482739 -148117044 - Lx7 LINE L1 -1162 6534 6331 6 672 783 144 30 0 chr3 11482745 11482877 -148116906 + L1_Mur2 LINE L1 4411 4546 -1331 6 672 1549 197 67 0 chr3 11482874 11483204 -148116579 + L1_Mur2 LINE L1 4858 5209 -668 6 672 1219 272 76 12 chr3 11483185 11483672 -148116111 - Lx7 LINE L1 -1621 6075 5555 6 672 654 252 15 0 chr3 11484033 11484164 -148115619 - ETnERV2-int LTR ERVK -204 7202 7070 6 672 1131 272 81 11 chr3 11484165 11484637 -148115146 - Lx7 LINE L1 -320 5560 5056 6 672 575 291 9 70 chr3 11484731 11484960 -148114823 - Lx6 LINE L1 0 7460 7246 6 672 495 282 25 5 chr3 11485049 11485252 -148114531 - Lx7 LINE L1 -1246 4634 4428 6 672 1804 204 0 3 chr3 11485267 11485581 -148114202 + L1VL4 LINE L1 209 521 -5781 6 672 4897 106 20 88 chr3 11485579 11485931 -148113852 + MusHAL1 LINE L1 1698 2047 -665 6 672 186 43 0 0 chr3 11485931 11485954 -148113829 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 6 672 4897 106 20 88 chr3 11485954 11486293 -148113490 + MusHAL1 LINE L1 2048 2349 -363 6 672 971 121 14 0 chr3 11486293 11486434 -148113349 + B1_Mus2 SINE Alu 3 145 -2 6 672 270 0 0 0 chr3 11486434 11486464 -148113319 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 6 672 4897 106 20 88 chr3 11486464 11486701 -148113082 + MusHAL1 LINE L1 2350 2563 -149 6 672 2486 164 12 7 chr3 11486722 11487151 -148112632 + L1_Mm LINE L1 5446 5876 -7 6 672 1203 91 46 32 chr3 11487164 11487381 -148112402 - MusHAL1 LINE L1 -2476 236 17 6 672 503 118 13 0 chr3 11487363 11487439 -148112344 - L1_Mm LINE L1 -1022 4861 4785 6 672 1239 111 0 0 chr3 11487437 11487626 -148112157 + L1_Mur2 LINE L1 3630 3818 -2059 6 672 2460 161 51 65 chr3 11487624 11488424 -148111359 + L1Md_A LINE L1 619 1395 -4488 6 672 4561 70 37 16 chr3 11488425 11489023 -148110760 - L1Md_F LINE L1 -3969 1914 1291 6 672 3965 54 0 0 chr3 11489023 11489505 -148110278 - LTRIS_Mm LTR ERV1 0 482 1 6 672 4561 130 74 2 chr3 11489505 11490249 -148109534 - L1Md_F LINE L1 -4593 1290 503 6 672 989 199 16 11 chr3 11490249 11490432 -148109351 - L1Md_F LINE L1 -5990 626 443 6 672 1926 251 92 39 chr3 11490428 11491256 -148108527 - L1_Mur3 LINE L1 -2969 2911 2040 6 672 1669 220 44 3 chr3 11491266 11491631 -148108152 - RLTR14 LTR ERV1 0 382 3 6 672 1940 208 68 20 chr3 11491852 11492308 -148107475 - RLTR11A2 LTR ERVK -49 478 1 6 672 422 274 96 40 chr3 11492308 11492559 -148107224 - L1_Mur3 LINE L1 -6560 1168 904 6 672 24 77 0 0 chr3 11492781 11492833 -148106950 + AT_rich Low_complexity Low_complexity 1 52 0 6 672 244 196 0 0 chr3 11493401 11493447 -148106336 + CT-rich Low_complexity Low_complexity 2 47 0 6 672 243 61 0 0 chr3 11493447 11493480 -148106303 + (CA)n Simple_repeat Simple_repeat 1 33 0 6 672 298 283 11 32 chr3 11493746 11493841 -148105942 - RLTR23 LTR ERV1 -24 406 314 6 672 27 0 0 0 chr3 11497048 11497075 -148102708 + AT_rich Low_complexity Low_complexity 1 27 0 6 672 207 0 0 0 chr3 11497333 11497356 -148102427 + (A)n Simple_repeat Simple_repeat 1 23 0 6 672 249 276 43 99 chr3 11497426 11497567 -148102216 - L1ME2 LINE L1 -20 6144 6012 6 672 22 0 0 0 chr3 11497939 11497961 -148101822 + AT_rich Low_complexity Low_complexity 1 22 0 6 672 270 259 128 26 chr3 11498165 11498399 -148101384 - L1MD LINE L1 -1715 4431 4174 6 672 413 306 28 0 chr3 11498405 11498549 -148101234 + (TATG)n Simple_repeat Simple_repeat 3 150 0 6 672 686 287 46 92 chr3 11498555 11498839 -148100944 - B4 SINE B4 -13 279 9 6 672 21 0 0 0 chr3 11498854 11498875 -148100908 + AT_rich Low_complexity Low_complexity 1 21 0 6 672 222 91 55 0 chr3 11499268 11499323 -148100460 + (TG)n Simple_repeat Simple_repeat 1 58 0 6 672 488 268 91 20 chr3 11499404 11499602 -148100181 + B3 SINE B2 5 216 0 6 672 833 133 14 0 chr3 11499679 11499822 -148099961 + (TTTCC)n Simple_repeat Simple_repeat 5 149 0 6 672 639 207 104 0 chr3 11499832 11499967 -148099816 - B1_Mur4 SINE Alu 0 150 2 6 672 24 77 0 0 chr3 11500032 11500084 -148099699 + AT_rich Low_complexity Low_complexity 1 52 0 1 672 276 211 0 0 chr3 11500285 11500361 -148099422 + (TA)n Simple_repeat Simple_repeat 2 77 0 2 672 682 336 57 20 chr3 11500381 11500733 -148099050 - Lx8 LINE L1 0 7473 7109 3 672 285 284 0 13 chr3 11500900 11500975 -148098808 - L1_Mur3 LINE L1 -2060 3820 3747 4 672 375 365 6 57 chr3 11501258 11501415 -148098368 - B1F1 SINE Alu 0 149 1 5 672 380 301 8 58 chr3 11501300 11501420 -148098363 - ID_B1 SINE B4 -33 191 78 6 672 573 287 158 11 chr3 11501543 11501726 -148098057 - B3 SINE B2 0 216 7 7 672 320 282 150 32 chr3 11501730 11501950 -148097833 - L1MD LINE L1 -3169 2977 2732 8 672 4440 255 77 79 chr3 11502324 11502475 -148097308 - Lx7 LINE L1 0 7696 7542 9 672 492 18 0 0 chr3 11502475 11502532 -148097251 + (CAATA)n Simple_repeat Simple_repeat 2 58 0 1 672 4440 255 77 79 chr3 11502532 11504162 -148095621 - Lx7 LINE L1 -155 7541 5918 9 672 21 57 0 0 chr3 11505009 11505044 -148094739 + AT_rich Low_complexity Low_complexity 1 35 0 1 672 989 56 0 0 chr3 11505183 11505309 -148094474 + B1_Mus2 SINE Alu 20 145 -2 1 672 268 262 0 32 chr3 11505545 11505608 -148094175 - PB1D10 SINE Alu -30 87 27 1 672 304 320 82 0 chr3 11507423 11507520 -148092263 - B3A SINE B2 -85 113 9 1 672 661 312 34 5 chr3 11507863 11508072 -148091711 + B3 SINE B2 1 215 -1 1 672 279 133 0 0 chr3 11508105 11508150 -148091633 + (GGAGAA)n Simple_repeat Simple_repeat 6 50 0 1 672 5787 196 11 13 chr3 11508232 11509400 -148090383 - Lx2 LINE L1 0 6997 5832 1 672 2562 141 24 0 chr3 11509402 11509821 -148089962 + L1_Mur2 LINE L1 4009 4437 -1440 1 672 1666 196 238 9 chr3 11509906 11510334 -148089449 + RLTR11A LTR ERVK 2 528 0 1 672 255 364 82 22 chr3 11510591 11510726 -148089057 + LTR80A LTR ERVL 423 565 -18 2 672 199 17 115 16 chr3 11510854 11510915 -148088868 + (CAGG)n Simple_repeat Simple_repeat 1 67 0 2 672 677 305 32 20 chr3 11510915 11511163 -148088620 - MTD LTR MaLR -107 312 62 2 672 360 111 0 0 chr3 11511173 11511227 -148088556 + (TTTA)n Simple_repeat Simple_repeat 1 54 0 2 672 4941 147 55 18 chr3 11511245 11512151 -148087632 - Lx3B LINE L1 -3 6970 6031 2 672 346 286 0 0 chr3 11512715 11512820 -148086963 + B4A SINE B4 184 288 -4 2 672 348 24 0 0 chr3 11512891 11512932 -148086851 + (CA)n Simple_repeat Simple_repeat 1 41 0 2 672 22 0 0 0 chr3 11513766 11513788 -148085995 + AT_rich Low_complexity Low_complexity 1 22 0 2 672 1297 159 54 4 chr3 11514184 11514443 -148085340 + RLTR22_Mur LTR ERVK 534 805 -1043 2 672 433 318 94 19 chr3 11514463 11514729 -148085054 - L1MC4 LINE L1 -4988 1227 942 2 672 480 200 15 30 chr3 11514732 11514866 -148084917 - Lx LINE L1 0 6654 6523 3 672 922 242 97 8 chr3 11514868 11515126 -148084657 + RLTR40 LTR ERVK 462 742 -75 3 672 701 320 34 82 chr3 11515230 11515608 -148084175 + MTEb LTR MaLR 6 365 -14 3 672 956 301 98 25 chr3 11515673 11516358 -148083425 + MTEa-int LTR MaLR 681 1572 -8 3 672 650 335 41 19 chr3 11516373 11516644 -148083139 + MTEa LTR MaLR 9 285 -94 3 672 837 273 55 113 chr3 11516641 11517100 -148082683 + RMER2 LTR ERV1 120 551 -16 3 672 4107 210 17 80 chr3 11517445 11518616 -148081167 + Lx5 LINE L1 3341 4437 -1440 3 672 37514 42 2 5 chr3 11518615 11524883 -148074900 - L1Md_T LINE L1 0 6585 243 3 672 6278 138 26 26 chr3 11524901 11526166 -148073617 - L1_Mus3 LINE L1 -5 6633 5362 3 672 3581 147 43 14 chr3 11526169 11527372 -148072411 - L1VL4 LINE L1 -2124 1435 195 3 672 5377 238 56 50 chr3 11527364 11529787 -148069996 + Lx5 LINE L1 4418 7240 -220 3 672 2685 234 70 37 chr3 11529787 11530567 -148069216 + RLTR13D1 LTR ERVK 1 806 0 3 672 529 279 142 0 chr3 11530567 11530764 -148069019 + Lx5 LINE L1 7235 7459 -1 3 672 455 0 18 0 chr3 11530766 11530821 -148068962 + (GGAA)n Simple_repeat Simple_repeat 3 58 0 4 672 672 252 0 13 chr3 11531984 11532133 -148067650 - B1_Mus1 SINE Alu 0 148 2 4 672 232 323 69 59 chr3 11532045 11532147 -148067636 - B4 SINE B4 -113 179 77 4 672 353 315 0 141 chr3 11532168 11532338 -148067445 - B1F SINE Alu 0 149 4 4 672 501 62 0 0 chr3 11532929 11532994 -148066789 + (TA)n Simple_repeat Simple_repeat 1 65 0 4 672 624 321 71 11 chr3 11533374 11533654 -148066129 - MER2 DNA MER2_type -48 297 1 4 673 22 56 0 0 chr3 11534841 11534877 -148064906 + AT_rich Low_complexity Low_complexity 1 36 0 4 673 505 383 95 37 chr3 11535058 11535136 -148064647 + LTR33 LTR ERVL 3 82 -433 4 673 4783 41 17 2 chr3 11535136 11535725 -148064058 - L1Md_F2 LINE L1 -12 6570 5973 4 673 505 383 95 37 chr3 11535725 11536131 -148063652 + LTR33 LTR ERVL 83 514 -1 4 673 7030 123 8 13 chr3 11536280 11537720 -148062063 - L1VL1 LINE L1 -2268 1430 1 4 673 644 74 0 21 chr3 11538126 11538222 -148061561 + (GAAA)n Simple_repeat Simple_repeat 1 94 0 5 673 207 108 0 26 chr3 11538279 11538317 -148061466 + (TTTTA)n Simple_repeat Simple_repeat 5 41 0 5 673 651 133 0 0 chr3 11538421 11538526 -148061257 + (TTC)n Simple_repeat Simple_repeat 1 105 0 5 673 1968 142 30 6 chr3 11538530 11538869 -148060914 - Lx3B LINE L1 -3 6970 6624 5 673 4372 136 9 11 chr3 11538869 11539463 -148060320 + Lx3B LINE L1 5318 5909 -1064 5 673 207 0 0 0 chr3 11539463 11539486 -148060297 + (CAA)n Simple_repeat Simple_repeat 2 24 0 5 673 4372 135 14 15 chr3 11539486 11539899 -148059884 + Lx3B LINE L1 5910 6320 -653 5 673 749 149 16 0 chr3 11539901 11540022 -148059761 + Lx3B LINE L1 6494 6616 -357 5 673 247 299 88 18 chr3 11541259 11541429 -148058354 - MER3 DNA MER1_type -26 183 2 5 673 216 0 0 0 chr3 11541542 11541566 -148058217 + (TTTTG)n Simple_repeat Simple_repeat 1 24 0 5 673 4031 78 0 16 chr3 11541595 11542142 -148057641 - L1Md_F2 LINE L1 -2 6580 6043 5 673 211 277 0 0 chr3 11542272 11542319 -148057464 + B4A SINE B4 4 50 -242 5 673 261 359 28 19 chr3 11542334 11542442 -148057341 + B4A SINE B4 184 292 0 5 673 22 80 0 0 chr3 11542874 11542924 -148056859 + AT_rich Low_complexity Low_complexity 1 50 0 6 673 234 245 0 0 chr3 11543099 11543148 -148056635 + (CA)n Simple_repeat Simple_repeat 2 50 0 6 673 280 314 16 48 chr3 11543152 11543276 -148056507 - Lx6 LINE L1 -388 7308 7189 6 673 317 93 0 18 chr3 11543315 11543370 -148056413 + (TTCA)n Simple_repeat Simple_repeat 3 56 0 6 673 433 219 15 30 chr3 11543380 11543512 -148056271 - Lx7 LINE L1 -149 7547 7418 6 673 5477 247 55 17 chr3 11543816 11545530 -148054253 - Lx6 LINE L1 -312 7148 5389 6 673 689 172 330 73 chr3 11545567 11545656 -148054127 - Lx3B LINE L1 -4 6969 6897 6 673 3012 80 2 2 chr3 11545656 11546056 -148053727 + MTB LTR MaLR 1 400 0 6 673 689 172 330 73 chr3 11546056 11546254 -148053529 - Lx3B LINE L1 -77 6896 6608 6 673 1792 202 101 2 chr3 11546266 11546722 -148053061 - Lx6 LINE L1 -514 5366 4866 6 673 1715 138 31 22 chr3 11546722 11547041 -148052742 + RLTRETN_Mm LTR ERVK 1 322 0 6 673 17496 155 26 20 chr3 11547041 11553777 -148046006 + ETnERV2-int LTR ERVK 1 7201 -205 6 673 1804 115 31 22 chr3 11553779 11554098 -148045685 + RLTRETN_Mm LTR ERVK 1 322 0 6 673 5846 210 38 12 chr3 11554098 11554227 -148045556 - Lx6 LINE L1 -1009 4871 4724 6 673 348 43 0 0 chr3 11554227 11554273 -148045510 + (TG)n Simple_repeat Simple_repeat 1 46 0 6 673 5846 210 38 12 chr3 11554273 11555654 -148044129 - Lx6 LINE L1 -1157 4723 3322 6 673 9980 244 51 39 chr3 11555696 11559298 -148040485 - Lx5 LINE L1 -19 7031 3386 6 673 1017 194 0 71 chr3 11559286 11559545 -148040238 - Lx5 LINE L1 -3032 2848 2600 6 673 218 56 0 27 chr3 11559545 11559582 -148040201 + (TTTA)n Simple_repeat Simple_repeat 3 38 0 7 673 964 239 10 43 chr3 11559582 11559623 -148040160 - Lx5 LINE L1 -3278 2599 2557 6 673 2966 220 29 20 chr3 11559609 11560041 -148039742 - Lx5 LINE L1 -3828 2049 1603 6 673 198 0 0 0 chr3 11560041 11560063 -148039720 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 7 673 1030 67 0 0 chr3 11560063 11560198 -148039585 - B1_Mus1 SINE Alu -10 138 4 7 673 2966 224 46 28 chr3 11560198 11560803 -148038980 - Lx5 LINE L1 -4275 1602 1006 6 673 531 189 25 0 chr3 11560812 11560934 -148038849 - RMER1B Other Other -1 1065 941 7 673 270 0 0 0 chr3 11560942 11560972 -148038811 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 7 673 1045 315 67 53 chr3 11560972 11561527 -148038256 - RMER1B Other Other -211 855 337 7 673 209 119 24 0 chr3 11562025 11562067 -148037716 + (GA)n Simple_repeat Simple_repeat 2 44 0 7 673 393 22 0 0 chr3 11565038 11565084 -148034699 + (CA)n Simple_repeat Simple_repeat 2 47 0 7 673 369 0 0 0 chr3 11565314 11565355 -148034428 + (TTTTA)n Simple_repeat Simple_repeat 2 42 0 7 673 1024 66 7 7 chr3 11565370 11565507 -148034276 - B1_Mus1 SINE Alu -10 138 2 7 673 495 344 82 24 chr3 11565812 11566273 -148033510 + L1ME3 LINE L1 5339 5826 -336 8 673 23 54 0 0 chr3 11566703 11566740 -148033043 + AT_rich Low_complexity Low_complexity 1 37 0 8 673 26 0 0 0 chr3 11567783 11567809 -148031974 + AT_rich Low_complexity Low_complexity 1 26 0 8 673 477 268 35 82 chr3 11567809 11567980 -148031803 + RSINE1 SINE B4 3 165 0 8 673 520 84 24 0 chr3 11568772 11568855 -148030928 + (GA)n Simple_repeat Simple_repeat 2 86 0 8 673 189 139 0 0 chr3 11569152 11569195 -148030588 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 8 673 425 37 0 34 chr3 11569197 11569267 -148030516 - B1_Mus2 SINE Alu 0 147 63 8 673 381 22 0 0 chr3 11569284 11569330 -148030453 + (CA)n Simple_repeat Simple_repeat 1 46 0 8 673 27 0 0 0 chr3 11569455 11569482 -148030301 + AT_rich Low_complexity Low_complexity 1 27 0 8 673 4793 92 27 1 chr3 11570496 11571305 -148028478 + Lx3_Mus LINE L1 5515 6342 -667 8 673 3211 151 88 17 chr3 11571305 11571955 -148027828 + RMER17D2 LTR ERVK 1 787 -119 9 673 4249 103 32 8 chr3 11571986 11572633 -148027150 + Lx3_Mus LINE L1 6337 6999 -10 9 673 195 42 0 0 chr3 11572639 11572663 -148027120 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 9 673 377 344 8 31 chr3 11572924 11573053 -148026730 + Tigger9b DNA MER2_type 62 187 -437 9 673 5305 182 57 25 chr3 11575155 11576822 -148022961 + Lx5 LINE L1 5082 6807 -243 9 673 324 243 10 0 chr3 11576833 11576936 -148022847 + Lx5 LINE L1 6943 7046 -4 9 673 336 221 0 0 chr3 11577094 11577171 -148022612 + GA-rich Low_complexity Low_complexity 3 79 0 9 673 23 86 0 0 chr3 11577968 11578026 -148021757 + AT_rich Low_complexity Low_complexity 1 58 0 9 673 342 0 0 0 chr3 11579488 11579526 -148020257 + (TA)n Simple_repeat Simple_repeat 1 38 0 9 673 3015 109 11 2 chr3 11579860 11580301 -148019482 + Lx3A LINE L1 5587 6031 -950 9 673 1358 153 0 13 chr3 11580299 11580530 -148019253 + Lx3A LINE L1 6743 6970 -11 9 673 336 48 0 0 chr3 11580530 11580572 -148019211 + (TAGA)n Simple_repeat Simple_repeat 4 45 0 9 673 864 55 0 0 chr3 11580735 11580845 -148018938 + (TA)n Simple_repeat Simple_repeat 2 111 0 1 673 4019 69 25 0 chr3 11580910 11581435 -148018348 + L1_Mus1 LINE L1 6030 6567 0 1 673 794 270 29 10 chr3 11581483 11581689 -148018094 + B3 SINE B2 6 215 -1 1 673 2540 82 191 3 chr3 11581932 11582299 -148017484 + RLTR10C LTR ERVK 1 436 0 1 673 363 291 28 28 chr3 11582414 11582520 -148017263 - RSINE1 SINE B4 -22 143 38 1 673 216 184 0 0 chr3 11582553 11582591 -148017192 + CT-rich Low_complexity Low_complexity 3 40 0 1 673 491 261 28 93 chr3 11582898 11583080 -148016703 - B3 SINE B2 -8 208 39 1 673 22 70 0 0 chr3 11583334 11583377 -148016406 + AT_rich Low_complexity Low_complexity 1 43 0 1 673 215 231 0 0 chr3 11583516 11583568 -148016215 + T-rich Low_complexity Low_complexity 3 54 0 1 673 315 291 6 81 chr3 11584394 11584555 -148015228 + L1M5 LINE L1 2737 2885 -3261 1 673 870 262 42 49 chr3 11584767 11585169 -148014614 + BGLII_A LTR ERVK 1 438 -7 1 673 331 258 32 20 chr3 11585453 11585567 -148014216 - MTE2b LTR MaLR -4 375 254 1 673 256 355 42 28 chr3 11585550 11585692 -148014091 - MTE2b LTR MaLR -235 144 1 1 673 216 0 0 0 chr3 11586001 11586025 -148013758 + (TG)n Simple_repeat Simple_repeat 1 24 0 1 673 851 0 10 0 chr3 11586025 11586123 -148013660 + (GA)n Simple_repeat Simple_repeat 1 100 0 1 673 330 45 0 0 chr3 11587986 11588030 -148011753 + (CA)n Simple_repeat Simple_repeat 2 45 0 1 673 8159 50 6 1 chr3 11588177 11589684 -148010099 - L1Md_F3 LINE L1 0 6584 5069 1 673 508 206 7 7 chr3 11589693 11589835 -148009948 + CT-rich Low_complexity Low_complexity 2 143 0 1 673 23 0 0 0 chr3 11589994 11590017 -148009766 + AT_rich Low_complexity Low_complexity 1 23 0 1 673 1458 241 19 16 chr3 11590041 11590408 -148009375 - ORR1D1 LTR MaLR -2 372 5 1 673 35395 35 0 0 chr3 11590447 11595907 -148003876 + L1Md_T LINE L1 31 5589 -297 1 673 8929 7 0 0 chr3 11595907 11596903 -148002880 + L1Md_T LINE L1 5590 6585 0 1 673 4873 9 0 0 chr3 11596908 11597452 -148002331 + L1Md_T LINE L1 6039 6582 0 1 673 375 145 0 0 chr3 11597464 11597547 -148002236 + (GA)n Simple_repeat Simple_repeat 2 84 0 1 673 180 77 0 0 chr3 11597857 11597883 -148001900 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 1 673 21 0 0 0 chr3 11598101 11598122 -148001661 + AT_rich Low_complexity Low_complexity 1 21 0 1 673 4828 137 34 2 chr3 11598162 11599319 -148000464 - Lx2A1 LINE L1 -659 6349 5158 1 673 3578 158 32 3 chr3 11599319 11599936 -147999847 + Lx2A1 LINE L1 6370 7004 -4 1 673 369 302 78 46 chr3 11601993 11602427 -147997356 - L1MC3 LINE L1 -8 7777 7330 1 673 1450 85 5 0 chr3 11602988 11603187 -147996596 + Lx LINE L1 6281 6480 -174 1 673 29 60 0 0 chr3 11603187 11603237 -147996546 + AT_rich Low_complexity Low_complexity 1 50 0 1 673 372 125 0 0 chr3 11603498 11603562 -147996221 + (TA)n Simple_repeat Simple_repeat 2 65 0 1 673 2389 68 16 71 chr3 11603828 11604192 -147995591 - ORR1A1 LTR MaLR -2 344 1 1 673 1054 110 98 0 chr3 11605014 11605177 -147994606 - B2_Mm2 SINE B2 -16 179 1 1 673 180 152 0 0 chr3 11605186 11605219 -147994564 + T-rich Low_complexity Low_complexity 1 33 0 1 673 914 242 104 45 chr3 11605234 11605502 -147994281 - MTC LTR MaLR -52 369 86 1 673 470 188 10 0 chr3 11605504 11605605 -147994178 + CT-rich Low_complexity Low_complexity 1 102 0 1 673 749 295 133 7 chr3 11605605 11605947 -147993836 - Lx5 LINE L1 -18 7032 6680 1 673 1193 276 37 9 chr3 11605940 11606467 -147993316 - Lx5 LINE L1 -597 6863 6102 1 673 499 187 0 0 chr3 11606471 11606562 -147993221 - MTC LTR MaLR -330 91 1 1 673 812 228 119 0 chr3 11606689 11606891 -147992892 + URR1A DNA MER1_type 1 226 0 1 673 443 306 12 6 chr3 11607013 11607268 -147992515 + (TG)n Simple_repeat Simple_repeat 1 256 0 1 673 302 317 40 60 chr3 11609799 11609950 -147989833 - B1_Mur1 SINE Alu 0 149 2 1 673 25 90 0 0 chr3 11609992 11610059 -147989724 + AT_rich Low_complexity Low_complexity 1 67 0 1 673 1115 301 91 34 chr3 11611667 11612258 -147987525 + Lx8 LINE L1 6764 7388 -85 1 673 906 217 60 133 chr3 11612429 11612828 -147986955 + Lx7 LINE L1 7327 7696 0 1 673 195 379 0 22 chr3 11613914 11614003 -147985780 - L2a LINE L2 -9 3417 3331 1 673 28 29 0 0 chr3 11614203 11614238 -147985545 + AT_rich Low_complexity Low_complexity 1 35 0 1 673 1580 173 174 9 chr3 11614278 11614622 -147985161 - MTC LTR MaLR 0 421 21 1 673 2200 154 10 47 chr3 11614622 11615024 -147984759 + Lx3A LINE L1 6595 6981 0 1 673 225 0 0 0 chr3 11615024 11615049 -147984734 + (A)n Simple_repeat Simple_repeat 1 25 0 1 673 252 0 0 0 chr3 11615102 11615130 -147984653 + (TC)n Simple_repeat Simple_repeat 1 28 0 1 673 390 322 139 33 chr3 11616032 11616276 -147983507 + B4A SINE B4 4 273 -19 1 673 189 0 0 0 chr3 11617041 11617062 -147982721 + (CAA)n Simple_repeat Simple_repeat 1 21 0 1 673 7611 62 3 19 chr3 11617144 11618368 -147981415 - L1Md_F2 LINE L1 -12 6570 5366 1 673 7476 81 14 0 chr3 11618368 11619391 -147980392 + L1_Mm LINE L1 4180 5216 -667 1 673 234 0 0 0 chr3 11619952 11619978 -147979805 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 1 673 288 0 0 0 chr3 11621739 11621771 -147978012 + (TCTA)n Simple_repeat Simple_repeat 4 35 0 1 673 1641 129 17 76 chr3 11621947 11622249 -147977534 + ORR1A4 LTR MaLR 1 284 -45 1 673 38 39 0 0 chr3 11622994 11623046 -147976737 + AT_rich Low_complexity Low_complexity 1 52 0 1 673 21820 166 23 34 chr3 11623085 11625378 -147974405 - Lx2 LINE L1 -842 6155 3855 1 673 468 0 0 0 chr3 11625378 11625430 -147974353 + (TC)n Simple_repeat Simple_repeat 2 53 0 1 673 21820 176 14 44 chr3 11625430 11627112 -147972671 - Lx2 LINE L1 -2029 3854 2266 1 673 1176 61 0 0 chr3 11627112 11627259 -147972524 - B1_Mm SINE Alu 0 147 1 1 673 21820 176 14 44 chr3 11627259 11627821 -147971962 - Lx2 LINE L1 -3618 2265 1722 1 673 3440 30 0 0 chr3 11627821 11628217 -147971566 + MTA_Mm LTR MaLR 1 396 0 1 673 21820 167 11 83 chr3 11628217 11629381 -147970402 - Lx2 LINE L1 -4162 1721 633 1 673 207 244 35 0 chr3 11629512 11629598 -147970185 + (TA)n Simple_repeat Simple_repeat 2 90 0 1 673 207 0 0 0 chr3 11629914 11629937 -147969846 + (TTG)n Simple_repeat Simple_repeat 2 24 0 1 673 570 208 19 65 chr3 11630077 11630231 -147969552 + RMER17C LTR ERVK 264 410 0 1 673 209 189 0 0 chr3 11630231 11630268 -147969515 + GA-rich Low_complexity Low_complexity 4 40 0 1 673 340 37 18 18 chr3 11630868 11630923 -147968860 + (TTTG)n Simple_repeat Simple_repeat 2 56 0 1 673 8560 23 0 0 chr3 11630934 11631994 -147967789 - L1Md_T LINE L1 0 6582 5523 1 673 275 297 11 11 chr3 11632294 11632386 -147967397 - MLT1A1 LTR MaLR -13 395 304 1 673 433 320 0 32 chr3 11632632 11632758 -147967025 - MTEa LTR MaLR -69 310 189 1 673 257 0 0 0 chr3 11632763 11632794 -147966989 - RMER17A2 LTR ERVK -875 31 1 1 673 360 290 114 35 chr3 11632893 11633259 -147966524 + L1M2 LINE L1 5320 5727 -564 1 673 3242 157 50 19 chr3 11633259 11634124 -147965659 - L1_Mur1 LINE L1 -4328 1558 683 1 673 6717 97 6 3 chr3 11634166 11635726 -147964057 + L1_Mus2 LINE L1 4918 6483 -83 1 673 1696 129 15 15 chr3 11635726 11635994 -147963789 + RMER17A2 LTR ERVK 1 268 -638 1 673 1183 68 0 0 chr3 11635994 11636142 -147963641 - L1Md_F2 LINE L1 -311 6271 6124 1 673 1860 132 0 22 chr3 11636142 11636453 -147963330 + L1Md_F2 LINE L1 6267 6570 -12 1 673 2986 144 24 26 chr3 11636464 11637030 -147962753 + RMER17A2 LTR ERVK 61 895 -11 1 673 558 81 23 0 chr3 11637044 11637131 -147962652 + L1_Mus2 LINE L1 6478 6566 0 1 673 276 324 81 21 chr3 11637367 11637553 -147962230 + L1_Mur3 LINE L1 4982 5178 -702 1 673 1689 247 54 45 chr3 11637559 11638076 -147961707 + RLTR11A LTR ERVK 7 528 0 1 673 225 236 169 0 chr3 11638165 11638254 -147961529 + L1_Mur3 LINE L1 5303 5406 -474 1 673 1170 48 7 0 chr3 11638256 11638402 -147961381 + B1_Mus1 SINE Alu 2 148 0 1 673 27 49 0 0 chr3 11638984 11639025 -147960758 + AT_rich Low_complexity Low_complexity 1 41 0 1 673 21 0 0 0 chr3 11639872 11639893 -147959890 + AT_rich Low_complexity Low_complexity 1 21 0 1 673 367 328 77 26 chr3 11640245 11640517 -147959266 - Lx8 LINE L1 -2 7471 7186 1 673 23 33 0 0 chr3 11641180 11641210 -147958573 + AT_rich Low_complexity Low_complexity 1 30 0 1 673 719 224 0 7 chr3 11641211 11641355 -147958428 - B1_Mur4 SINE Alu -2 148 6 1 673 5439 148 22 6 chr3 11641968 11642878 -147956905 - Lx2 LINE L1 -110 6887 5963 1 673 8024 169 31 109 chr3 11642896 11644059 -147955724 - L1_Mus3 LINE L1 -423 6215 5135 1 673 375 250 0 0 chr3 11644059 11644135 -147955648 + RLTR13D1 LTR ERVK 731 806 0 1 673 8024 169 31 109 chr3 11644135 11645971 -147953812 - L1_Mus3 LINE L1 -423 5134 3427 1 673 4047 171 15 19 chr3 11645977 11647106 -147952677 + Lx2 LINE L1 5083 6214 -783 1 673 21 95 0 0 chr3 11647560 11647623 -147952160 + AT_rich Low_complexity Low_complexity 1 63 0 1 673 1107 171 10 154 chr3 11647980 11648291 -147951492 + RMER13B LTR ERVK 31 296 -612 1 673 369 192 164 0 chr3 11648287 11648360 -147951423 + RMER13B LTR ERVK 401 485 -423 1 673 640 268 18 124 chr3 11648341 11648614 -147951169 + RMER13B LTR ERVK 606 849 -11 1 673 414 0 0 0 chr3 11650657 11650703 -147949080 + (TTTA)n Simple_repeat Simple_repeat 2 47 0 1 673 185 132 26 0 chr3 11650969 11651007 -147948776 + T-rich Low_complexity Low_complexity 1 39 0 1 673 546 186 132 0 chr3 11651029 11651158 -147948625 - Lx2 LINE L1 -77 6920 6775 1 673 7348 160 29 15 chr3 11651155 11653399 -147946384 - Lx2 LINE L1 -351 6646 4370 1 673 387 173 0 0 chr3 11653400 11653475 -147946308 + Lx2 LINE L1 4292 4366 -1520 1 673 24 53 0 0 chr3 11653520 11653558 -147946225 + AT_rich Low_complexity Low_complexity 1 38 0 1 673 227 103 26 0 chr3 11653745 11653784 -147945999 + (TCTA)n Simple_repeat Simple_repeat 3 42 0 1 673 21 0 0 0 chr3 11653969 11653990 -147945793 + AT_rich Low_complexity Low_complexity 1 21 0 1 673 21 82 0 0 chr3 11655897 11655946 -147943837 + AT_rich Low_complexity Low_complexity 1 49 0 1 673 366 91 0 0 chr3 11656004 11656059 -147943724 + (CA)n Simple_repeat Simple_repeat 2 56 0 1 673 539 342 25 12 chr3 11656064 11656227 -147943556 - B3 SINE B2 -51 165 1 1 673 277 303 18 0 chr3 11656492 11656601 -147943182 + CT-rich Low_complexity Low_complexity 2 112 0 1 673 247 321 139 26 chr3 11656602 11656717 -147943066 - B1F1 SINE Alu -21 128 1 2 673 328 231 129 104 chr3 11657154 11657347 -147942436 + MLT1B LTR MaLR 40 237 -153 2 673 1136 309 122 20 chr3 11657463 11658101 -147941682 + Lx8 LINE L1 6752 7454 -19 2 673 225 312 21 28 chr3 11659748 11659890 -147939893 - L1_Mur3 LINE L1 -689 5191 5051 2 673 351 311 53 19 chr3 11659931 11660208 -147939575 + L1_Mur3 LINE L1 4667 4950 -927 2 673 31 26 0 0 chr3 11660440 11660478 -147939305 + AT_rich Low_complexity Low_complexity 1 38 0 2 673 221 75 0 24 chr3 11661729 11661770 -147938013 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 2 673 1144 75 0 7 chr3 11661770 11661917 -147937866 - B1_Mm SINE Alu 0 147 2 2 673 1384 308 48 21 chr3 11661977 11662455 -147937328 - Lx6 LINE L1 -764 6696 6206 2 673 1486 273 30 67 chr3 11662460 11662954 -147936829 + Lx6 LINE L1 6959 7434 -26 2 673 2361 308 87 30 chr3 11662941 11663936 -147935847 + RMER1C Other Other 289 1340 -2 2 673 342 323 153 5 chr3 11663951 11664141 -147935642 + ID_B1 SINE B4 3 220 -4 2 673 237 0 116 0 chr3 11664181 11664224 -147935559 + (CAAAA)n Simple_repeat Simple_repeat 2 49 0 2 673 1212 314 18 9 chr3 11664224 11664562 -147935221 - ORR1D2 LTR MaLR -29 341 1 2 674 22 70 0 0 chr3 11665977 11666020 -147933763 + AT_rich Low_complexity Low_complexity 1 43 0 2 674 329 357 76 60 chr3 11666507 11666993 -147932790 + Lx8 LINE L1 6353 6846 -627 2 674 210 109 42 42 chr3 11667017 11667065 -147932718 + A-rich Low_complexity Low_complexity 3 50 0 2 674 349 357 109 17 chr3 11667068 11667473 -147932310 + Lx8 LINE L1 6870 7311 -162 2 674 24 0 0 0 chr3 11667667 11667691 -147932092 + AT_rich Low_complexity Low_complexity 1 24 0 2 674 417 54 0 0 chr3 11669580 11669636 -147930147 + (TG)n Simple_repeat Simple_repeat 1 56 0 2 674 246 246 103 60 chr3 11670071 11670188 -147929595 + Lx7 LINE L1 7567 7688 -8 2 674 378 134 0 0 chr3 11670210 11670277 -147929506 + (TCTG)n Simple_repeat Simple_repeat 2 68 0 2 674 252 0 0 0 chr3 11670282 11670310 -147929473 + (CA)n Simple_repeat Simple_repeat 1 28 0 2 674 1106 82 7 0 chr3 11670464 11670610 -147929173 - B1_Mm SINE Alu 0 147 1 2 674 294 238 38 45 chr3 11671141 11671298 -147928485 + (CATA)n Simple_repeat Simple_repeat 1 155 0 2 674 1362 116 14 0 chr3 11672459 11672675 -147927108 + L1_Mus3 LINE L1 6419 6637 -1 2 674 10404 108 50 103 chr3 11672834 11673924 -147925859 - L1VL2 LINE L1 -640 2975 2032 2 674 7948 44 12 0 chr3 11673924 11674908 -147924875 + L1Md_F2 LINE L1 5587 6582 0 2 674 10404 121 38 71 chr3 11674908 11676819 -147922964 - L1VL2 LINE L1 -1584 2031 94 2 674 17595 127 44 4 chr3 11676829 11680439 -147919344 - L1_Mus3 LINE L1 0 6638 2874 2 674 2536 59 0 6 chr3 11680435 11680792 -147918991 - L1VL1 LINE L1 -5323 1099 745 2 674 2554 104 0 0 chr3 11680807 11681163 -147918620 - L1_Mus1 LINE L1 0 6567 6212 2 674 4830 77 5 12 chr3 11681163 11681982 -147917801 + L1_Mus1 LINE L1 5417 6229 -338 2 674 4265 165 27 5 chr3 11681980 11682723 -147917060 - L1VL1 LINE L1 -5663 759 1 2 674 30 0 0 0 chr3 11684023 11684053 -147915730 + AT_rich Low_complexity Low_complexity 1 30 0 2 674 1406 200 12 8 chr3 11684716 11685018 -147914765 - Lx5 LINE L1 -322 6736 6439 2 674 540 273 71 42 chr3 11684958 11685126 -147914657 + Lx5 LINE L1 6870 7042 -8 2 674 725 0 12 0 chr3 11685368 11685453 -147914330 + (TC)n Simple_repeat Simple_repeat 1 86 0 2 674 1160 188 14 5 chr3 11685521 11685735 -147914048 + ORR1B1 LTR MaLR 179 394 0 2 674 4689 212 39 65 chr3 11685735 11686968 -147912815 + ORR1B1-int LTR MaLR 1 1201 -762 2 674 4326 169 40 24 chr3 11686968 11687849 -147911934 + RMER17A2 LTR ERVK 1 895 -11 2 674 2168 176 20 5 chr3 11687863 11688258 -147911525 + ORR1B1-int LTR MaLR 1196 1596 -367 2 674 1409 236 147 88 chr3 11688270 11688847 -147910936 - RMER20B LTR ERVK -9 618 8 2 674 1463 233 47 83 chr3 11688854 11689341 -147910442 + ORR1B1-int LTR MaLR 1058 1792 0 2 674 1272 214 40 79 chr3 11689341 11689645 -147910138 + ORR1B1 LTR MaLR 36 327 -67 2 674 189 0 0 0 chr3 11689646 11689667 -147910116 + (TG)n Simple_repeat Simple_repeat 2 22 0 2 674 7890 168 22 8 chr3 11690616 11690698 -147909085 - L1_Mm LINE L1 -83 5800 5721 2 674 3431 23 2 0 chr3 11690698 11691093 -147908690 - MTA_Mm LTR MaLR 0 396 1 2 674 9182 32 2 1 chr3 11691093 11692190 -147907593 - MTA_Mm-int LTR MaLR 0 1098 1 2 674 3431 23 2 0 chr3 11692190 11692585 -147907198 - MTA_Mm LTR MaLR 0 396 1 2 674 7890 168 22 8 chr3 11692585 11693962 -147905821 - L1_Mm LINE L1 -163 5720 4321 2 674 2409 125 3 3 chr3 11693963 11694333 -147905450 + Lx LINE L1 4923 5292 -594 2 674 5502 128 34 3 chr3 11694349 11695144 -147904639 + Lx LINE L1 5741 6548 -106 2 674 180 0 0 0 chr3 11695144 11695164 -147904619 + (GGGAGA)n Simple_repeat Simple_repeat 4 23 0 2 674 5502 128 34 3 chr3 11695164 11695251 -147904532 + Lx LINE L1 6549 6649 -5 2 674 1459 60 0 15 chr3 11695728 11695932 -147903851 - L1Md_F2 LINE L1 0 6582 6382 2 674 7869 57 4 1 chr3 11695953 11697286 -147902497 - L1Md_F2 LINE L1 -2 6580 5244 2 674 5674 71 0 0 chr3 11697295 11698029 -147901754 + L1_Mm LINE L1 4653 5386 -497 2 674 6653 55 6 0 chr3 11698023 11699267 -147900516 - L1Md_F2 LINE L1 -186 6396 5142 2 674 533 132 0 4 chr3 11699263 11699353 -147900430 + L1_Mm LINE L1 5075 5162 -715 2 674 365 313 92 9 chr3 11699384 11699613 -147900170 + MER2 DNA MER2_type 89 336 -9 2 674 210 105 0 0 chr3 11699818 11699856 -147899927 + (A)n Simple_repeat Simple_repeat 1 38 0 2 674 823 275 276 7 chr3 11700156 11700475 -147899308 - Lx9 LINE L1 -266 7378 6974 2 674 427 317 8 0 chr3 11701358 11701478 -147898305 - B3 SINE B2 0 216 96 2 674 34 55 0 0 chr3 11702526 11702581 -147897202 + AT_rich Low_complexity Low_complexity 1 55 0 2 674 1476 189 40 0 chr3 11703891 11704192 -147895591 - Lx6 LINE L1 -672 5208 4896 2 674 1905 192 112 4 chr3 11704200 11704256 -147895527 + Lx6 LINE L1 5198 5261 -619 2 674 210 71 0 0 chr3 11704256 11704284 -147895499 + (TA)n Simple_repeat Simple_repeat 2 29 0 2 674 1905 192 112 4 chr3 11704284 11704683 -147895100 + Lx6 LINE L1 5262 5701 -179 2 674 1654 268 113 17 chr3 11704705 11705243 -147894540 + Lx6 LINE L1 5908 6497 -963 2 674 2137 277 35 75 chr3 11705257 11705893 -147893890 + Lx6 LINE L1 6798 7407 -53 2 674 2676 92 44 15 chr3 11705902 11706033 -147893750 - BGLII_Mus LTR ERVK 0 422 293 2 674 3204 41 8 5 chr3 11706033 11706428 -147893355 + MTA_Mm LTR MaLR 1 396 0 2 674 2676 92 44 15 chr3 11706428 11706706 -147893077 - BGLII_Mus LTR ERVK -130 292 1 2 674 565 191 34 7 chr3 11706710 11706858 -147892925 - RMER3D-int LTR ERVK -5 2837 2686 2 674 312 250 10 10 chr3 11706898 11706995 -147892788 - RMER3D-int LTR ERVK -159 2167 2071 2 674 1670 188 126 17 chr3 11707011 11707480 -147892303 - RMER3D-int LTR ERVK -1309 1533 1014 2 674 529 205 43 0 chr3 11707501 11707618 -147892165 - RMER3D-int LTR ERVK -2232 610 489 2 674 455 231 30 58 chr3 11707653 11707884 -147891899 - RMER3D-int LTR ERVK -1907 935 652 2 674 2645 112 55 0 chr3 11708246 11708646 -147891137 - BGLII_Mus LTR ERVK 0 422 1 2 674 1119 68 0 20 chr3 11708828 11708977 -147890806 - B1_Mus1 SINE Alu 0 148 3 2 674 3321 46 2 0 chr3 11709354 11709749 -147890034 - MTA_Mm LTR MaLR 0 396 1 2 674 8022 67 25 2 chr3 11709749 11710822 -147888961 - MTA_Mm-int LTR MaLR 0 1098 1 2 674 3274 46 5 0 chr3 11710822 11711216 -147888567 - MTA_Mm LTR MaLR 0 396 1 2 674 834 336 48 30 chr3 11714907 11715345 -147884438 - Lx7 LINE L1 -401 7295 6850 2 674 2997 43 0 21 chr3 11715461 11715746 -147884037 - L1Md_F2 LINE L1 -14 6568 6289 2 674 3512 20 0 0 chr3 11715746 11716142 -147883641 - MTA_Mm LTR MaLR 0 396 1 2 674 9162 29 5 2 chr3 11716142 11717237 -147882546 - MTA_Mm-int LTR MaLR 0 1098 1 2 674 3512 20 0 0 chr3 11717237 11717633 -147882150 - MTA_Mm LTR MaLR 0 396 1 2 674 2997 43 0 21 chr3 11717633 11717724 -147882059 - L1Md_F2 LINE L1 -294 6288 6200 2 674 201 178 27 27 chr3 11717725 11717800 -147881983 + T-rich Low_complexity Low_complexity 4 78 0 2 674 681 47 0 0 chr3 11718066 11718151 -147881632 + (TA)n Simple_repeat Simple_repeat 1 85 0 2 674 21 0 0 0 chr3 11718833 11718854 -147880929 + AT_rich Low_complexity Low_complexity 1 21 0 2 674 215 381 34 74 chr3 11719059 11719328 -147880455 + B4A SINE B4 35 292 0 2 674 15254 148 24 20 chr3 11719622 11724227 -147875556 - Lx4A LINE L1 -4 7054 2389 2 674 1817 0 0 0 chr3 11724227 11724497 -147875286 + L1Md_T LINE L1 6375 6582 0 2 674 374 89 36 0 chr3 11724497 11724553 -147875230 - Lx4A LINE L1 -3475 2402 2345 2 674 3577 49 0 4 chr3 11724554 11725004 -147874779 - L1Md_F2 LINE L1 0 6582 6135 2 674 13647 70 1 0 chr3 11725004 11726846 -147872937 + L1_Mm LINE L1 1449 3292 -2591 2 674 656 149 106 0 chr3 11726842 11726983 -147872800 - Lx4A LINE L1 -3523 2354 2199 2 674 1885 204 96 16 chr3 11726983 11727421 -147872362 + RLTR26 LTR ERVK 1 473 -169 2 674 5437 62 0 8 chr3 11727535 11728237 -147871546 + L1Md_F2 LINE L1 4890 5585 -298 2 674 7834 50 6 8 chr3 11728238 11729236 -147870547 + L1Md_F2 LINE L1 5587 6582 0 2 674 492 62 0 0 chr3 11729265 11729329 -147870454 + (A)n Simple_repeat Simple_repeat 1 64 0 2 674 4710 154 36 31 chr3 11729350 11729733 -147870050 - Lx4A LINE L1 -3673 2204 1825 2 674 224 0 65 0 chr3 11729733 11729764 -147870019 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 2 674 4710 154 36 31 chr3 11729764 11730005 -147869778 - Lx4A LINE L1 -4053 1824 1590 2 674 243 0 0 0 chr3 11730005 11730032 -147869751 + (TC)n Simple_repeat Simple_repeat 2 28 0 2 674 4710 154 36 31 chr3 11730032 11730084 -147869699 - Lx4A LINE L1 -4288 1589 1540 2 674 2469 54 0 9 chr3 11730084 11730403 -147869380 + L1Md_F2 LINE L1 6259 6574 -8 2 674 4710 154 36 31 chr3 11730403 11730717 -147869066 - Lx4A LINE L1 -4338 1539 1208 2 674 1626 248 31 18 chr3 11730710 11731096 -147868687 - Lx4A LINE L1 -6043 1043 653 2 674 557 162 98 15 chr3 11731096 11731228 -147868555 - RLTR22_Mur LTR ERVK -107 1741 1599 2 674 880 144 8 0 chr3 11731335 11731467 -147868316 + B1_Mus2 SINE Alu 5 137 -10 2 674 216 0 0 0 chr3 11731468 11731492 -147868291 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2 674 3450 196 53 43 chr3 11731501 11732379 -147867404 - RLTR22_Mur LTR ERVK -961 887 1 2 674 468 296 35 43 chr3 11732424 11732664 -147867119 - Lx8 LINE L1 -7 7466 7230 2 674 2865 30 0 3 chr3 11732664 11733002 -147866781 - IAPLTR1a_Mm LTR ERVK 0 337 1 2 674 468 296 35 43 chr3 11733002 11733015 -147866768 - Lx8 LINE L1 -244 7229 7215 2 674 55829 17 17 3 chr3 11733015 11739385 -147860398 - IAPEz-int LTR ERVK -13 6468 8 2 674 2842 36 0 3 chr3 11739385 11739723 -147860060 - IAPLTR1a_Mm LTR ERVK 0 337 1 2 674 509 256 207 24 chr3 11739741 11739949 -147859834 - Lx8 LINE L1 -260 7213 6968 2 674 225 299 89 137 chr3 11740650 11740774 -147859009 + B4 SINE B4 175 292 0 2 674 6492 59 10 0 chr3 11741355 11742155 -147857628 + RLTR13C2 LTR ERVK 1 808 0 2 674 882 146 33 27 chr3 11742158 11742341 -147857442 + ETnERV2-int LTR ERVK 3 186 -5622 2 674 275 260 10 20 chr3 11742414 11742516 -147857267 + ETnERV2-int LTR ERVK 279 379 -6874 2 674 2130 265 87 33 chr3 11742892 11744023 -147855760 + ETnERV2-int LTR ERVK 179 1981 -5272 2 674 3236 26 0 0 chr3 11744024 11744403 -147855380 - L1Md_F3 LINE L1 -591 5993 5615 2 674 2914 38 46 3 chr3 11744403 11744769 -147855014 + L1Md_F3 LINE L1 6202 6583 -1 2 674 18238 125 59 59 chr3 11744769 11746089 -147853694 + ETnERV2-int LTR ERVK 650 1962 -5444 2 674 239 278 0 0 chr3 11746089 11746143 -147853640 + MTC-int LTR MaLR 484 537 -721 2 674 18238 125 59 59 chr3 11746143 11747240 -147852543 + ETnERV2-int LTR ERVK 1963 3055 -4351 2 674 938 98 0 40 chr3 11747240 11747389 -147852394 + B1_Mm SINE Alu 5 147 0 2 674 18238 125 59 59 chr3 11747389 11748093 -147851690 + ETnERV2-int LTR ERVK 3056 3828 -3578 2 674 4646 70 3 2 chr3 11748093 11748679 -147851104 - LTRIS_Mus LTR ERV1 0 587 1 2 674 18238 173 97 62 chr3 11748679 11749634 -147850149 + ETnERV2-int LTR ERVK 2773 4094 -3312 2 674 5102 63 12 0 chr3 11749634 11750302 -147849481 + RLTR13C2 LTR ERVK 131 806 -2 2 674 2843 186 36 82 chr3 11751986 11752829 -147846954 - RMER6C LTR ERVK 0 720 4 2 674 745 127 6 62 chr3 11753061 11753221 -147846562 - Lx LINE L1 -2 6652 6502 2 674 1963 180 0 16 chr3 11753221 11753594 -147846189 - L1_Mur2 LINE L1 -1879 3998 3630 2 674 6920 115 30 3 chr3 11753592 11755334 -147844449 + L1_Mus2 LINE L1 4785 6566 0 2 674 1971 156 36 41 chr3 11755330 11755692 -147844091 + Lx LINE L1 5998 6357 -297 2 674 245 237 17 0 chr3 11755695 11755754 -147844029 - RLTR25B LTR ERVK -968 60 1 2 674 2439 163 119 0 chr3 11755755 11756241 -147843542 - L1_Mur2 LINE L1 -51 5826 5283 2 674 1529 201 237 0 chr3 11756252 11756699 -147843084 - Lx4A LINE L1 -1 7057 6505 2 674 3178 146 73 2 chr3 11756682 11757230 -147842553 + Lx4A LINE L1 5595 6181 -877 2 674 21 0 0 0 chr3 11757325 11757346 -147842437 + AT_rich Low_complexity Low_complexity 1 21 0 3 674 4751 64 8 0 chr3 11757639 11758246 -147841537 - L1Md_F2 LINE L1 0 6582 5971 3 674 339 352 19 0 chr3 11760950 11761055 -147838728 + PB1D10 SINE Alu 4 110 -7 3 674 377 320 37 80 chr3 11761089 11761415 -147838368 + Lx8 LINE L1 7158 7469 -4 3 674 298 0 48 0 chr3 11761545 11761587 -147838196 + (CAA)n Simple_repeat Simple_repeat 2 45 0 3 674 521 264 175 20 chr3 11761732 11761983 -147837800 - RMER20B LTR ERVK -99 528 239 3 674 4348 131 59 35 chr3 11762738 11763540 -147836243 + Lx LINE L1 5828 6648 -6 3 674 770 81 0 9 chr3 11763543 11763655 -147836128 + (GAAA)n Simple_repeat Simple_repeat 2 112 0 3 674 509 323 82 63 chr3 11764764 11765081 -147834702 + MLT1B LTR MaLR 66 388 -2 3 674 252 0 0 0 chr3 11765355 11765383 -147834400 + (T)n Simple_repeat Simple_repeat 1 28 0 3 674 378 0 0 0 chr3 11765651 11765693 -147834090 + (CA)n Simple_repeat Simple_repeat 1 42 0 3 674 22 56 0 0 chr3 11766298 11766334 -147833449 + AT_rich Low_complexity Low_complexity 1 36 0 3 674 243 0 0 0 chr3 11767411 11767438 -147832345 + (TG)n Simple_repeat Simple_repeat 1 27 0 3 674 396 0 0 0 chr3 11767523 11767567 -147832216 + (CA)n Simple_repeat Simple_repeat 2 45 0 3 674 507 84 32 0 chr3 11767939 11768034 -147831749 - L1_Mus2 LINE L1 -1 6565 6468 3 674 413 333 32 28 chr3 11768146 11768362 -147831421 + RMER15 LTR ERVL 346 562 -13 3 674 1777 141 36 60 chr3 11769348 11769680 -147830103 - ORR1A4 LTR MaLR -2 327 4 3 674 522 255 71 0 chr3 11769813 11770009 -147829774 + Lx7 LINE L1 5661 5870 -1826 3 674 3283 226 58 23 chr3 11770026 11770814 -147828969 + Lx7 LINE L1 6504 7329 -367 3 674 696 12 0 0 chr3 11770814 11770895 -147828888 + (TG)n Simple_repeat Simple_repeat 2 82 0 3 674 3283 226 58 23 chr3 11770895 11770936 -147828847 + Lx7 LINE L1 7330 7361 -335 3 674 271 284 0 13 chr3 11770938 11771013 -147828770 + CT-rich Low_complexity Low_complexity 2 75 0 3 674 4445 249 30 21 chr3 11771128 11771271 -147828512 - Lx5 LINE L1 -95 6955 6820 3 674 327 25 0 0 chr3 11771271 11771311 -147828472 + (CAGG)n Simple_repeat Simple_repeat 3 42 0 3 674 4445 249 30 21 chr3 11771311 11772289 -147827494 - Lx5 LINE L1 -231 6819 5822 3 674 519 60 0 0 chr3 11772289 11772356 -147827427 + (TG)n Simple_repeat Simple_repeat 2 68 0 3 674 2935 209 27 65 chr3 11772393 11773531 -147826252 - L1_Mur2 LINE L1 -3860 2017 896 3 674 1980 216 96 52 chr3 11773942 11774597 -147825186 - L1_Mur3 LINE L1 -2814 3066 2383 3 674 4975 157 54 11 chr3 11774603 11775494 -147824289 + RMER17B LTR ERVK 1 929 -29 3 674 3107 240 64 35 chr3 11775499 11777153 -147822630 - L1_Mur3 LINE L1 -3499 2381 680 3 674 332 355 81 0 chr3 11777241 11777413 -147822370 - L1_Mur3 LINE L1 -7029 699 514 3 674 222 211 0 0 chr3 11778250 11778307 -147821476 + A-rich Low_complexity Low_complexity 1 57 0 3 674 22 0 0 0 chr3 11778767 11778789 -147820994 + AT_rich Low_complexity Low_complexity 1 22 0 3 674 7738 21 26 0 chr3 11778840 11779773 -147820010 - L1_Mm LINE L1 -2307 3576 2620 3 674 8384 30 0 0 chr3 11779773 11780756 -147819027 + L1Md_T LINE L1 5600 6582 0 3 674 309 255 134 31 chr3 11780870 11780979 -147818804 - L1M2 LINE L1 -2191 3952 3821 3 674 324 0 0 0 chr3 11780979 11781015 -147818768 + (TA)n Simple_repeat Simple_repeat 2 37 0 3 674 558 43 0 0 chr3 11781015 11781083 -147818700 + (TG)n Simple_repeat Simple_repeat 2 70 0 3 674 309 255 134 31 chr3 11781083 11781166 -147818617 - L1M2 LINE L1 -2323 3820 3740 3 674 594 282 6 28 chr3 11781172 11781351 -147818432 - Lx6 LINE L1 -26 7434 7260 3 674 397 222 0 0 chr3 11781352 11781424 -147818359 - Lx6 LINE L1 -1512 5948 5877 3 674 1376 172 4 0 chr3 11781424 11781657 -147818126 - ORR1A4 LTR MaLR -93 236 3 3 674 816 258 140 7 chr3 11781657 11781942 -147817841 - Lx6 LINE L1 -205 5672 5350 3 674 410 157 14 9 chr3 11781952 11782039 -147817744 - Lx3A LINE L1 0 7009 6906 3 674 575 167 9 0 chr3 11782035 11782143 -147817640 - Lx6 LINE L1 -523 5354 5246 3 674 4490 6 0 0 chr3 11782149 11782650 -147817133 - L1Md_A LINE L1 0 6582 6082 3 674 1733 231 20 9 chr3 11782650 11783096 -147816687 - Lx6 LINE L1 -1526 4354 3904 3 674 2290 223 30 3 chr3 11783103 11783693 -147816090 + L1_Mur3 LINE L1 3067 3672 -2208 3 674 2688 281 41 14 chr3 11783692 11784454 -147815329 + Lx5 LINE L1 6252 7033 -17 3 674 688 220 90 26 chr3 11784484 11784717 -147815066 + L1_Mur3 LINE L1 3651 3898 -1982 3 674 289 228 44 65 chr3 11784732 11784954 -147814829 - Lx6 LINE L1 -2157 3723 3519 3 674 344 236 0 0 chr3 11784984 11785056 -147814727 + Lx8 LINE L1 7176 7247 -226 3 674 2379 91 19 30 chr3 11785056 11785660 -147814123 + MTA_Mm-int LTR MaLR 206 1098 0 3 674 2886 73 37 3 chr3 11785660 11786043 -147813740 + MTA_Mm LTR MaLR 1 396 0 3 674 229 265 29 14 chr3 11786565 11786634 -147813149 - L1MD3 LINE L1 -1169 6826 6757 3 674 2797 187 34 13 chr3 11786751 11787304 -147812479 - Lx3B LINE L1 -2 6971 6407 3 674 534 75 0 0 chr3 11787317 11787397 -147812386 + (T)n Simple_repeat Simple_repeat 1 80 0 3 674 189 0 0 0 chr3 11787397 11787418 -147812365 + (TG)n Simple_repeat Simple_repeat 2 22 0 3 674 468 238 107 41 chr3 11787869 11788066 -147811717 + B3 SINE B2 1 210 -6 3 674 318 270 0 57 chr3 11788115 11788237 -147811546 - L1M2 LINE L1 -492 5808 5694 3 674 28 61 0 0 chr3 11788914 11788963 -147810820 + AT_rich Low_complexity Low_complexity 1 49 0 3 674 1082 87 0 0 chr3 11789668 11789806 -147809977 + B1_Mus1 SINE Alu 2 139 -9 3 674 248 70 0 23 chr3 11789806 11789850 -147809933 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 3 674 251 316 123 62 chr3 11790010 11790189 -147809594 + MLT1B LTR MaLR 199 388 -2 3 674 252 250 109 10 chr3 11790388 11790489 -147809294 - Lx9 LINE L1 -1 7643 7533 3 674 1038 291 3 15 chr3 11790520 11790851 -147808932 + Lx9 LINE L1 7133 7459 -185 3 674 375 60 0 0 chr3 11791161 11791211 -147808572 + (CATATA)n Simple_repeat Simple_repeat 5 54 0 3 84 35086 49 0 4 chr3 11791283 11796727 -147803056 + L1Md_T LINE L1 70 5589 -297 3 675 8354 34 1 0 chr3 11796728 11797722 -147802061 + L1Md_T LINE L1 5591 6585 0 3 675 286 343 22 15 chr3 11799192 11799328 -147800455 + Lx7 LINE L1 7014 7150 -546 3 675 591 235 5 86 chr3 11799337 11799523 -147800260 + ORR1C1 LTR MaLR 1 171 -213 3 675 2203 165 44 0 chr3 11799523 11799911 -147799872 + Lx3C LINE L1 6230 6634 -342 3 675 695 237 29 12 chr3 11799918 11800089 -147799694 + ORR1C1 LTR MaLR 150 323 -55 3 675 3934 52 14 0 chr3 11800247 11800742 -147799041 + L1Md_F2 LINE L1 6081 6582 0 3 675 430 401 53 23 chr3 11800742 11801005 -147798778 + B4A SINE B4 2 272 -20 3 675 489 139 0 0 chr3 11801070 11801178 -147798605 + (CA)n Simple_repeat Simple_repeat 1 108 0 3 675 655 176 0 16 chr3 11802538 11802659 -147797124 - Lx7 LINE L1 -801 6895 6777 3 675 4879 75 16 3 chr3 11802855 11803498 -147796285 + L1Md_F2 LINE L1 5916 6566 -16 3 675 13981 6 0 2 chr3 11803498 11805073 -147794710 + L1Md_A LINE L1 4012 5586 -297 3 675 8987 4 0 0 chr3 11805073 11806069 -147793714 + L1Md_A LINE L1 5587 6582 0 3 675 263 234 147 11 chr3 11806146 11806241 -147793542 - RMER20A LTR ERVK -236 391 284 3 675 293 241 14 57 chr3 11806264 11806398 -147793385 - RMER20A LTR ERVK -294 222 94 3 675 1036 309 68 30 chr3 11808357 11808827 -147790956 - Lx6 LINE L1 -26 7434 6947 3 675 1156 279 46 41 chr3 11808907 11809409 -147790374 - Lx6 LINE L1 -686 6364 5757 3 675 466 301 94 83 chr3 11809411 11809879 -147789904 + RMER20A LTR ERVK 5 477 -39 3 675 2484 201 7 27 chr3 11809917 11810419 -147789364 - Lx6 LINE L1 -124 5753 5253 3 675 1582 47 0 0 chr3 11810419 11810611 -147789172 - B2_Mm1a SINE B2 0 193 2 3 675 2484 201 7 27 chr3 11810611 11810660 -147789123 - Lx6 LINE L1 -625 5252 5213 3 675 7595 174 51 124 chr3 11810687 11814329 -147785454 - Lx3C LINE L1 -1 6975 3650 3 675 1240 48 0 0 chr3 11814329 11814476 -147785307 - B1_Mus2 SINE Alu 0 147 1 3 675 7595 198 38 157 chr3 11814476 11814626 -147785157 - Lx3C LINE L1 -2228 3649 3513 3 675 1446 305 169 9 chr3 11814718 11815373 -147784410 + Lx7 LINE L1 6508 7273 -423 3 675 180 125 0 0 chr3 11815380 11815412 -147784371 + (TG)n Simple_repeat Simple_repeat 1 32 0 3 675 480 117 0 0 chr3 11815428 11815505 -147784278 + (TA)n Simple_repeat Simple_repeat 2 78 0 3 675 309 243 72 26 chr3 11815754 11815948 -147783835 - L1M4c LINE L1 -5376 1008 806 3 675 30 69 0 0 chr3 11816117 11816175 -147783608 + AT_rich Low_complexity Low_complexity 1 58 0 3 675 2166 278 96 38 chr3 11816176 11816488 -147783295 - Lx9 LINE L1 -51 7593 7245 3 675 1419 222 51 0 chr3 11816488 11816799 -147782984 + ORR1A4 LTR MaLR 3 329 0 3 675 2166 278 96 38 chr3 11816799 11817373 -147782410 - Lx9 LINE L1 -400 7244 6656 3 675 602 191 0 0 chr3 11817378 11817488 -147782295 - ORR1B1 LTR MaLR 0 394 285 3 675 231 36 0 0 chr3 11817490 11817518 -147782265 + (TA)n Simple_repeat Simple_repeat 1 28 0 3 675 225 0 0 0 chr3 11817520 11817545 -147782238 + (TG)n Simple_repeat Simple_repeat 2 26 0 3 675 275 309 41 0 chr3 11817550 11817647 -147782136 - L1_Rod LINE L1 -144 5703 5603 3 675 206 156 0 22 chr3 11817704 11817750 -147782033 + T-rich Low_complexity Low_complexity 6 50 0 3 675 1266 87 21 27 chr3 11817777 11817965 -147781818 - B2_Mm2 SINE B2 -7 188 2 3 675 582 15 0 0 chr3 11818062 11818129 -147781654 + (GA)n Simple_repeat Simple_repeat 2 68 0 3 675 729 338 67 19 chr3 11818145 11818576 -147781207 - L1M4c LINE L1 -5912 472 21 3 675 2446 198 74 46 chr3 11819059 11819433 -147780350 + RMER6C LTR ERVK 6 404 -286 3 675 195 42 0 0 chr3 11819433 11819457 -147780326 + (CAGTG)n Simple_repeat Simple_repeat 2 25 0 3 675 2446 204 69 64 chr3 11819457 11819882 -147779901 + RMER6C LTR ERVK 382 720 0 3 675 33 73 0 0 chr3 11820078 11820146 -147779637 + AT_rich Low_complexity Low_complexity 1 68 0 3 675 2854 142 21 6 chr3 11820602 11821561 -147778222 - L1VL4 LINE L1 -4169 1714 734 3 675 433 279 33 28 chr3 11821555 11821733 -147778050 - L1VL4 LINE L1 -5813 803 675 3 675 320 247 6 136 chr3 11821755 11821924 -147777859 - L1VL1 LINE L1 -6055 367 221 3 675 22 70 0 0 chr3 11822267 11822310 -147777473 + AT_rich Low_complexity Low_complexity 1 43 0 3 675 22 70 0 0 chr3 11822691 11822734 -147777049 + AT_rich Low_complexity Low_complexity 1 43 0 3 675 186 73 73 0 chr3 11822919 11822960 -147776823 + (TTG)n Simple_repeat Simple_repeat 2 45 0 3 675 249 276 17 0 chr3 11823105 11823163 -147776620 + URR1A DNA MER1_type 44 102 -124 3 675 243 0 0 0 chr3 11823163 11823190 -147776593 + (TTTA)n Simple_repeat Simple_repeat 3 29 0 3 675 803 147 7 47 chr3 11823386 11823536 -147776247 + URR1A DNA MER1_type 83 226 0 3 675 29 47 0 0 chr3 11824479 11824522 -147775261 + AT_rich Low_complexity Low_complexity 1 43 0 3 675 7734 159 38 13 chr3 11824568 11826675 -147773108 + L1VL4 LINE L1 4 2167 -1392 3 675 887 135 57 6 chr3 11826667 11826739 -147773044 + L1_Mus4 LINE L1 3406 3476 -2407 3 675 216 0 0 0 chr3 11826739 11826763 -147773020 + (CAA)n Simple_repeat Simple_repeat 1 24 0 3 675 887 135 57 6 chr3 11826763 11826847 -147772936 + L1_Mus4 LINE L1 3477 3568 -2315 3 675 6824 146 16 17 chr3 11826835 11828552 -147771231 + L1_Mus4 LINE L1 4922 6631 -5 3 675 24 32 0 0 chr3 11829417 11829448 -147770335 + AT_rich Low_complexity Low_complexity 1 31 0 3 675 1636 219 37 74 chr3 11829620 11830000 -147769783 - RLTR17 LTR ERVK -78 614 249 3 675 436 222 7 88 chr3 11830041 11830189 -147769594 - RLTR17 LTR ERVK -452 240 105 3 675 897 265 157 20 chr3 11830384 11830734 -147769049 + MTD LTR MaLR 18 415 -4 4 675 249 57 0 0 chr3 11831861 11831896 -147767887 + (TTTG)n Simple_repeat Simple_repeat 4 38 0 4 675 219 36 0 0 chr3 11832404 11832432 -147767351 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 4 675 1021 82 0 0 chr3 11832432 11832567 -147767216 - B1_Mus1 SINE Alu -12 136 2 4 675 23 0 0 0 chr3 11833763 11833786 -147765997 + AT_rich Low_complexity Low_complexity 1 23 0 4 675 1039 75 0 0 chr3 11833846 11833979 -147765804 + B1_Mm SINE Alu 2 134 -13 4 675 586 48 0 57 chr3 11833979 11834067 -147765716 + B1_Mm SINE Alu 65 147 0 4 675 1348 54 5 79 chr3 11835790 11835992 -147763791 - B2_Mm1t SINE B2 -6 187 1 4 675 4340 142 35 15 chr3 11836002 11836754 -147763029 - Lx2 LINE L1 -1 6996 6230 4 675 3308 192 17 70 chr3 11836757 11838023 -147761760 - Lx2 LINE L1 -956 6041 4859 4 675 404 319 48 62 chr3 11838053 11838726 -147761057 + L1M3 LINE L1 4031 4693 -1447 4 675 13042 124 9 1 chr3 11838740 11841616 -147758167 + L1_Mus3 LINE L1 3735 6636 -2 4 675 236 310 30 0 chr3 11842027 11842127 -147757656 + L1_Rod LINE L1 5114 5216 -631 4 675 180 216 0 0 chr3 11842598 11842649 -147757134 + T-rich Low_complexity Low_complexity 1 51 0 4 675 880 109 0 30 chr3 11842649 11842781 -147757002 - B1_Mus1 SINE Alu 0 148 21 4 675 26 93 0 0 chr3 11842871 11842946 -147756837 + AT_rich Low_complexity Low_complexity 1 75 0 4 675 240 270 147 20 chr3 11843506 11843608 -147756175 + MTD LTR MaLR 1 115 -304 4 675 327 25 0 0 chr3 11843609 11843649 -147756134 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 4 675 2173 51 4 18 chr3 11843709 11843988 -147755795 - L1_Mus1 LINE L1 0 6567 6293 4 675 1081 87 67 0 chr3 11843988 11844138 -147755645 + L1_Mus1 LINE L1 6129 6288 -279 4 675 222 62 0 0 chr3 11844226 11844258 -147755525 + (A)n Simple_repeat Simple_repeat 1 32 0 4 675 1162 188 37 40 chr3 11844268 11844540 -147755243 - RLTR46 LTR ERVK -7 313 43 4 675 210 133 44 0 chr3 11844550 11844595 -147755188 + A-rich Low_complexity Low_complexity 2 48 0 4 675 297 91 44 33 chr3 11844654 11844745 -147755038 + (TTTG)n Simple_repeat Simple_repeat 2 93 0 4 675 308 103 17 0 chr3 11846332 11846390 -147753393 + (TA)n Simple_repeat Simple_repeat 1 59 0 4 675 662 0 13 0 chr3 11847305 11847383 -147752400 + (CA)n Simple_repeat Simple_repeat 2 80 0 4 675 228 67 0 0 chr3 11847383 11847412 -147752371 + (TA)n Simple_repeat Simple_repeat 2 31 0 4 675 934 130 0 7 chr3 11847915 11848062 -147751721 + B1_Mm SINE Alu 2 147 0 4 675 245 217 72 0 chr3 11848647 11848716 -147751067 + MTEb LTR MaLR 287 360 -19 4 675 256 105 66 0 chr3 11848796 11848872 -147750911 + (TG)n Simple_repeat Simple_repeat 2 82 0 4 675 8863 173 12 2 chr3 11848911 11848987 -147750796 + L1_Mur1 LINE L1 3055 3134 -2752 4 675 301 22 21 21 chr3 11848987 11849034 -147750749 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 4 675 8863 173 12 2 chr3 11849034 11850624 -147749159 + L1_Mur1 LINE L1 3135 4735 -1151 4 675 270 0 0 0 chr3 11850624 11850654 -147749129 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 4 675 8863 173 12 2 chr3 11850654 11850685 -147749098 + L1_Mur1 LINE L1 4736 4768 -1118 4 675 4618 146 26 15 chr3 11850685 11851499 -147748284 + Lx LINE L1 5832 6654 0 4 675 22 80 0 0 chr3 11851503 11851553 -147748230 + AT_rich Low_complexity Low_complexity 1 50 0 4 675 34673 50 0 5 chr3 11851935 11857246 -147742537 + L1Md_T LINE L1 207 5589 -297 4 675 8277 39 1 0 chr3 11857246 11858240 -147741543 + L1Md_T LINE L1 5590 6584 -1 4 675 198 71 0 0 chr3 11858742 11858770 -147741013 + (CATATA)n Simple_repeat Simple_repeat 1 28 0 4 675 458 260 0 28 chr3 11859123 11859230 -147740553 - B1_Mur2 SINE Alu -15 134 31 4 675 1981 193 21 5 chr3 11859292 11859678 -147740105 + ORR1B1 LTR MaLR 3 394 0 4 675 525 313 30 12 chr3 11859680 11859848 -147739935 + B3A SINE B2 5 175 -23 4 675 559 346 119 30 chr3 11859848 11860416 -147739367 + Lx7 LINE L1 6778 7411 -62 4 675 1547 231 242 2 chr3 11860433 11860862 -147738921 - RMER15 LTR ERVL 0 575 44 4 675 1844 129 51 10 chr3 11860963 11861131 -147738652 - ORR1A2 LTR MaLR 0 327 151 4 675 878 79 16 0 chr3 11861131 11861258 -147738525 + (TTTC)n Simple_repeat Simple_repeat 4 132 0 4 675 3710 135 68 5 chr3 11861263 11861905 -147737878 - L1_Mus3 LINE L1 -7 6631 5949 4 675 1844 129 51 10 chr3 11861905 11862044 -147737739 - ORR1A2 LTR MaLR -181 146 1 4 675 200 34 0 33 chr3 11862899 11862929 -147736854 + (TTG)n Simple_repeat Simple_repeat 2 30 0 4 675 1334 228 111 39 chr3 11862929 11863289 -147736494 + RLTR40 LTR ERVK 432 817 0 4 675 410 109 43 0 chr3 11863978 11864070 -147735713 + (TA)n Simple_repeat Simple_repeat 2 97 0 4 675 297 0 0 0 chr3 11864070 11864103 -147735680 + (GA)n Simple_repeat Simple_repeat 2 34 0 4 675 641 299 119 13 chr3 11864618 11864920 -147734863 + Lx8 LINE L1 7114 7447 -26 4 675 24 53 0 0 chr3 11864926 11864964 -147734819 + AT_rich Low_complexity Low_complexity 1 38 0 4 675 7019 92 9 9 chr3 11866289 11867642 -147732141 - L1_Mus1 LINE L1 0 6567 5215 4 675 2012 73 14 4 chr3 11868088 11868364 -147731419 - L1Md_F2 LINE L1 -6 6576 6298 4 675 1255 320 28 44 chr3 11868580 11869143 -147730640 - Lx9 LINE L1 -720 6924 6371 4 675 22 88 0 0 chr3 11869169 11869226 -147730557 + AT_rich Low_complexity Low_complexity 1 57 0 4 675 22 0 0 0 chr3 11869883 11869905 -147729878 + AT_rich Low_complexity Low_complexity 1 22 0 4 675 201 151 10 70 chr3 11870046 11870146 -147729637 + A-rich Low_complexity Low_complexity 2 95 0 4 675 354 415 44 0 chr3 11870361 11870520 -147729263 + B3A SINE B2 1 166 -32 4 675 223 203 51 0 chr3 11870539 11870598 -147729185 + (TAAA)n Simple_repeat Simple_repeat 4 65 0 4 675 225 0 0 0 chr3 11870719 11870744 -147729039 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 4 675 504 48 0 0 chr3 11870757 11870820 -147728963 + (TC)n Simple_repeat Simple_repeat 2 64 0 4 675 423 115 10 50 chr3 11870820 11870921 -147728862 - Lx LINE L1 -14 6640 6544 4 675 2033 136 27 0 chr3 11870922 11871252 -147728531 - L1_Mm LINE L1 -279 5604 5266 4 675 9319 153 33 40 chr3 11871231 11873519 -147726264 - L1VL4 LINE L1 -1163 2396 131 4 675 240 35 0 0 chr3 11873667 11873696 -147726087 + (AATAG)n Simple_repeat Simple_repeat 4 32 0 4 675 260 104 42 0 chr3 11874167 11874215 -147725568 + (CAAA)n Simple_repeat Simple_repeat 1 50 0 4 675 296 259 32 89 chr3 11874215 11874338 -147725445 - RLTR23 LTR ERV1 -68 362 247 4 675 2056 205 13 52 chr3 11874604 11875051 -147724732 + RLTR23 LTR ERV1 1 430 0 4 675 223 104 42 0 chr3 11875433 11875481 -147724302 + (TA)n Simple_repeat Simple_repeat 2 51 0 4 675 26 30 0 0 chr3 11875667 11875700 -147724083 + AT_rich Low_complexity Low_complexity 1 33 0 4 675 1828 140 87 46 chr3 11875946 11876314 -147723469 + RLTR9A2 LTR ERVK 1 383 0 4 675 1432 185 31 14 chr3 11876443 11876734 -147723049 + RMER10B LTR ERVL 1 296 -102 4 675 2327 217 35 84 chr3 11879177 11879887 -147719896 + RMER6C LTR ERVK 1 675 -15 4 675 34120 69 4 1 chr3 11880182 11885389 -147714394 + L1Md_F3 LINE L1 406 5586 -297 4 675 7674 53 13 1 chr3 11885390 11886375 -147713408 + L1Md_F3 LINE L1 5588 6584 0 4 675 264 295 45 83 chr3 11887136 11887269 -147712514 - BGLII_B LTR ERVK -27 414 287 4 675 609 292 27 20 chr3 11887432 11887729 -147712054 + L1MC3 LINE L1 7480 7778 -7 4 675 526 203 76 173 chr3 11887958 11888017 -147711766 + RLTR19 LTR ERVK 1 57 -621 4 675 2959 108 7 0 chr3 11888017 11888443 -147711340 + L1_Mus3 LINE L1 6208 6636 -2 4 675 590 230 110 122 chr3 11888443 11888678 -147711105 + RLTR19 LTR ERVK 58 497 -2 4 675 33 56 0 0 chr3 11888805 11888859 -147710924 + AT_rich Low_complexity Low_complexity 1 54 0 4 675 372 22 0 0 chr3 11889035 11889080 -147710703 + (GA)n Simple_repeat Simple_repeat 2 46 0 4 675 273 96 0 0 chr3 11889091 11889143 -147710640 - L1VL4 LINE L1 -3 3911 3860 4 675 29 28 0 0 chr3 11889148 11889184 -147710599 + AT_rich Low_complexity Low_complexity 1 36 0 4 675 3941 155 67 3 chr3 11889184 11889858 -147709925 - Lx LINE L1 -3 6651 5935 4 675 2141 92 10 7 chr3 11889855 11890162 -147709621 + Lx LINE L1 5624 5931 -705 4 675 9844 150 40 14 chr3 11890154 11893350 -147706433 - L1VL4 LINE L1 -69 3845 560 4 675 358 322 101 32 chr3 11894505 11894694 -147705089 + B4A SINE B4 26 227 -65 4 675 1443 225 98 6 chr3 11894739 11895056 -147704727 + ORR1B2 LTR MaLR 3 348 -19 4 675 1499 130 4 12 chr3 11895056 11895298 -147704485 + Lx LINE L1 6221 6460 -194 4 675 1101 101 6 0 chr3 11895286 11895444 -147704339 - L1Md_F2 LINE L1 -741 5841 5683 4 675 3180 192 38 4 chr3 11895442 11896175 -147703608 - L1_Mur2 LINE L1 -3917 1960 1203 4 675 1458 264 36 26 chr3 11896190 11896236 -147703547 - L1_Mur2 LINE L1 -5854 1232 1188 4 675 1140 68 0 26 chr3 11896236 11896387 -147703396 - B1_Mus1 SINE Alu 0 148 2 4 675 1458 264 36 26 chr3 11896387 11896838 -147702945 - L1_Mur2 LINE L1 -5899 1187 730 4 675 380 167 0 12 chr3 11897387 11897472 -147702311 + (TA)n Simple_repeat Simple_repeat 1 84 0 4 675 3005 71 5 10 chr3 11899693 11900091 -147699692 + MTA_Mm LTR MaLR 1 396 0 4 675 6474 141 24 1 chr3 11900333 11901572 -147698211 - L1_Mus3 LINE L1 0 6638 5371 4 675 4494 150 44 81 chr3 11901569 11901900 -147697883 + L1_Mm LINE L1 3865 4209 -1674 4 675 252 0 0 0 chr3 11901900 11901928 -147697855 + (TA)n Simple_repeat Simple_repeat 2 29 0 4 675 4494 150 44 81 chr3 11901928 11902565 -147697218 + L1_Mm LINE L1 4210 4798 -1085 4 675 4035 176 32 28 chr3 11902603 11904368 -147695415 - ETnERV2-int LTR ERVK -3321 4085 2356 4 675 2538 137 52 5 chr3 11904622 11905005 -147694778 - SSU-rRNA_Hsa rRNA rRNA -931 938 538 4 675 861 170 0 24 chr3 11905066 11905235 -147694548 - RLTR13D1 LTR ERVK -156 650 486 4 675 2503 179 31 6 chr3 11905235 11905725 -147694058 - ETnERV2-int LTR ERVK -4409 2997 2496 4 675 4123 186 63 92 chr3 11905752 11906956 -147692827 - MMETn-int LTR ERVK -3675 1169 1 4 675 1587 189 32 69 chr3 11906957 11907365 -147692418 - RLTR9C LTR ERVK 0 393 1 4 675 1750 199 14 0 chr3 11907365 11907727 -147692056 + L1_Mm LINE L1 5024 5390 -493 4 675 26 93 0 0 chr3 11908019 11908094 -147691689 + AT_rich Low_complexity Low_complexity 1 75 0 4 675 39 38 0 0 chr3 11908420 11908473 -147691310 + AT_rich Low_complexity Low_complexity 1 53 0 4 675 2903 15 0 0 chr3 11908558 11908898 -147690885 - L1_Mm LINE L1 -528 5355 5016 4 675 5551 36 0 0 chr3 11908898 11909558 -147690225 + L1Md_T LINE L1 5923 6582 0 4 675 26 74 0 0 chr3 11911333 11911387 -147688396 + AT_rich Low_complexity Low_complexity 1 54 0 5 675 10276 110 88 5 chr3 11911916 11913629 -147686154 + Lx3_Mus LINE L1 2488 4342 -1544 5 675 9048 120 9 6 chr3 11913623 11914944 -147684839 + Lx3_Mus LINE L1 5059 6382 -627 5 675 288 0 0 0 chr3 11914944 11914976 -147684807 + (TA)n Simple_repeat Simple_repeat 2 33 0 5 675 9048 123 21 7 chr3 11914976 11915590 -147684193 + Lx3_Mus LINE L1 6383 7007 -2 5 675 4998 164 58 88 chr3 11915744 11916919 -147682864 - Lx3C LINE L1 0 6976 5838 5 675 2586 171 9 5 chr3 11916916 11917358 -147682425 + Lx3C LINE L1 5387 5830 -56 5 675 338 316 59 65 chr3 11917362 11917548 -147682235 - L1MC4a LINE L1 -1248 6634 6450 5 675 717 12 0 0 chr3 11917802 11917884 -147681899 + (TA)n Simple_repeat Simple_repeat 2 83 0 5 675 279 346 28 33 chr3 11917967 11918182 -147681601 - Lx9 LINE L1 -279 7365 7152 5 675 5005 127 5 8 chr3 11918283 11919032 -147680751 + Lx LINE L1 5824 6570 -84 5 675 1447 169 14 1 chr3 11919032 11919288 -147680495 + RMER17B LTR ERVK 1 238 -720 5 675 15782 193 132 7 chr3 11919288 11921466 -147678317 + Lx2 LINE L1 1540 3847 -2030 5 675 387 0 0 0 chr3 11921466 11921509 -147678274 + (CA)n Simple_repeat Simple_repeat 2 44 0 5 675 15782 186 99 9 chr3 11921509 11923725 -147676058 + Lx2 LINE L1 3848 6448 -549 5 84 29149 112 19 10 chr3 11923700 11929073 -147670710 + L1Md_F2 LINE L1 163 5586 -297 5 676 7764 49 17 18 chr3 11929073 11930070 -147669713 + L1Md_F2 LINE L1 5587 6582 0 5 676 1666 221 23 7 chr3 11930073 11930510 -147669273 + Lx5 LINE L1 4853 5296 -581 5 676 474 18 0 0 chr3 11930883 11930938 -147668845 + (TTTA)n Simple_repeat Simple_repeat 2 56 0 5 676 917 295 102 6 chr3 11930950 11931284 -147668499 + MTD LTR MaLR 3 368 -51 5 676 3805 215 46 21 chr3 11931286 11932516 -147667267 + Lx5 LINE L1 5335 6622 -428 5 676 37624 20 3 7 chr3 11933237 11938640 -147661143 + L1Md_A LINE L1 211 5586 -297 5 676 8522 27 0 0 chr3 11938640 11939684 -147660099 + L1Md_A LINE L1 5587 6582 0 5 676 3223 48 5 0 chr3 11940079 11940473 -147659310 - MTA_Mm LTR MaLR 0 396 1 5 676 189 0 0 0 chr3 11940655 11940676 -147659107 + (A)n Simple_repeat Simple_repeat 1 21 0 5 676 48 32 0 0 chr3 11941419 11941481 -147658302 + AT_rich Low_complexity Low_complexity 1 62 0 5 676 4138 116 32 48 chr3 11941766 11942517 -147657266 + RMER17A LTR ERVK 13 751 0 5 676 1720 127 82 158 chr3 11942553 11942991 -147656792 - RLTR44A LTR ERVK 0 405 1 5 676 4757 62 3 0 chr3 11942992 11943588 -147656195 - RLTR44-int LTR ERVK -1 2811 2214 5 676 584 125 5 147 chr3 11943836 11944091 -147655692 - RLTR44-int LTR ERVK -1871 941 816 5 676 290 214 0 0 chr3 11944101 11944157 -147655626 - RLTR44-int LTR ERVK -2756 56 1 5 676 2260 139 42 37 chr3 11944157 11944560 -147655223 - RLTR44A LTR ERVK 0 405 1 5 676 327 25 0 0 chr3 11945082 11945122 -147654661 + (T)n Simple_repeat Simple_repeat 1 40 0 5 676 7535 72 4 1 chr3 11945628 11946603 -147653180 - L1_Mus1 LINE L1 -1 6566 5589 5 676 21 82 0 0 chr3 11946650 11946699 -147653084 + AT_rich Low_complexity Low_complexity 1 49 0 5 676 32 26 0 0 chr3 11947016 11947055 -147652728 + AT_rich Low_complexity Low_complexity 1 39 0 5 676 8004 153 12 16 chr3 11947623 11949046 -147650737 - L1_Mur1 LINE L1 -88 5798 4382 5 676 6674 79 77 3 chr3 11949050 11950081 -147649702 - L1Md_F2 LINE L1 0 6582 5519 5 676 5269 89 3 1 chr3 11950082 11950811 -147648972 + L1Md_F2 LINE L1 4801 5530 -353 5 676 13249 150 118 43 chr3 11950809 11951274 -147648509 - L1_Mur1 LINE L1 -1510 4376 3913 5 676 312 27 0 0 chr3 11951274 11951311 -147648472 + (TTG)n Simple_repeat Simple_repeat 2 38 0 5 676 13249 167 96 39 chr3 11951311 11954671 -147645112 - L1_Mur1 LINE L1 -1974 3912 3 5 676 1617 203 29 29 chr3 11954678 11955028 -147644755 + Lx3B LINE L1 6621 6970 -3 5 676 324 0 0 0 chr3 11955184 11955220 -147644563 + (TA)n Simple_repeat Simple_repeat 2 37 0 5 676 397 293 67 22 chr3 11955298 11955476 -147644307 - B3A SINE B2 -11 187 2 5 676 33 0 0 0 chr3 11955701 11955734 -147644049 + AT_rich Low_complexity Low_complexity 1 33 0 5 676 434 243 8 67 chr3 11956318 11956437 -147643346 + PB1D9 SINE Alu 1 112 -8 5 676 393 318 70 32 chr3 11956603 11956788 -147642995 - MT2A LTR ERVL -267 266 75 5 676 365 250 142 9 chr3 11956726 11956839 -147642944 - MTE2a LTR MaLR -243 136 9 5 676 634 307 72 18 chr3 11957225 11957447 -147642336 + MTD LTR MaLR 1 234 -185 5 676 4531 159 30 12 chr3 11957450 11958250 -147641533 + Lx LINE L1 5841 6654 0 5 676 420 55 0 0 chr3 11958250 11958305 -147641478 + (GA)n Simple_repeat Simple_repeat 2 56 0 5 676 1137 60 18 0 chr3 11958317 11958484 -147641299 + (GGAA)n Simple_repeat Simple_repeat 1 170 0 5 676 711 240 142 0 chr3 11958484 11958667 -147641116 + MTD LTR MaLR 208 416 -3 5 676 339 169 48 0 chr3 11958713 11958837 -147640946 + (TA)n Simple_repeat Simple_repeat 2 131 0 5 676 216 348 11 0 chr3 11958838 11958930 -147640853 + (TATG)n Simple_repeat Simple_repeat 2 94 0 5 676 576 206 0 0 chr3 11958934 11959060 -147640723 + (TA)n Simple_repeat Simple_repeat 2 127 0 5 676 503 341 46 5 chr3 11959161 11959379 -147640404 + Lx7 LINE L1 6578 6804 -892 5 676 236 190 14 100 chr3 11959672 11959742 -147640041 + L1MC4a LINE L1 7445 7508 -374 5 676 2316 177 109 31 chr3 11959778 11960292 -147639491 - RMER1A Other Other -13 1017 464 5 676 684 252 56 88 chr3 11961030 11961335 -147638448 + RLTR19-int LTR ERVK 4025 4319 -1818 5 676 406 230 0 0 chr3 11961384 11961471 -147638312 - URR1B DNA MER1_type 0 225 139 5 676 9502 25 0 0 chr3 11961475 11963267 -147636516 - L1Md_T LINE L1 0 6582 4790 5 676 239 273 33 22 chr3 11963381 11963471 -147636312 - Lx9 LINE L1 -438 7206 7116 5 676 888 279 53 53 chr3 11963481 11963917 -147635866 + Lx9 LINE L1 7208 7643 -1 5 676 750 346 61 11 chr3 11964617 11964954 -147634829 - MTD LTR MaLR -35 384 7 5 676 854 316 64 53 chr3 11964961 11965040 -147634743 + Lx8 LINE L1 6328 6406 -1067 5 676 2957 69 23 0 chr3 11965040 11965431 -147634352 + MTB LTR MaLR 1 400 0 5 676 854 316 64 53 chr3 11965431 11965786 -147633997 + Lx8 LINE L1 6407 6767 -706 5 676 850 214 0 11 chr3 11965847 11966036 -147633747 + Lx2B LINE L1 6814 7000 0 5 676 795 116 0 0 chr3 11966041 11966162 -147633621 + (TA)n Simple_repeat Simple_repeat 2 122 0 5 676 194 62 31 0 chr3 11966494 11966526 -147633257 + (CAAAA)n Simple_repeat Simple_repeat 2 34 0 5 676 245 288 88 0 chr3 11966623 11966703 -147633080 - PB1D9 SINE Alu -31 89 3 5 676 390 280 55 101 chr3 11966635 11966674 -147633109 - RLTR25A LTR ERVK -431 672 584 5 676 511 214 42 113 chr3 11966674 11966816 -147632967 - MT2B LTR ERVL -313 288 157 5 676 768 171 25 21 chr3 11966771 11966950 -147632833 - ORR1A3-int LTR MaLR -1188 604 420 5 676 390 280 55 101 chr3 11966816 11966873 -147632910 - RLTR25A LTR ERVK -431 583 446 5 676 40110 17 2 6 chr3 11966950 11973303 -147626480 - L1Md_A LINE L1 -19 6563 241 5 676 770 280 183 8 chr3 11974019 11974418 -147625365 - Lx9 LINE L1 -24 7620 7152 5 676 482 360 102 26 chr3 11975423 11975885 -147623898 + MLT2B1 LTR ERVL 8 504 -16 5 676 25 31 0 0 chr3 11977007 11977039 -147622744 + AT_rich Low_complexity Low_complexity 1 32 0 5 676 1763 102 14 4 chr3 11977752 11978027 -147621756 + L1_Mus3 LINE L1 6359 6636 -2 5 676 25 31 0 0 chr3 11978245 11978277 -147621506 + AT_rich Low_complexity Low_complexity 1 32 0 5 676 342 312 31 0 chr3 11978348 11978476 -147621307 + Lx7 LINE L1 7134 7265 -431 5 676 634 288 23 41 chr3 11978474 11978695 -147621088 + L1VL1 LINE L1 29 245 -6177 5 676 415 279 15 7 chr3 11978752 11978889 -147620894 + L1Md_F LINE L1 675 812 -5804 5 676 20819 139 38 21 chr3 11978889 11982822 -147616961 + L1Md_F LINE L1 725 4731 -1152 5 676 264 30 0 0 chr3 11982822 11982855 -147616928 + (CAAAA)n Simple_repeat Simple_repeat 2 34 0 5 676 20819 136 17 24 chr3 11982855 11982974 -147616809 + L1Md_F LINE L1 4732 4841 -1042 5 676 234 300 93 65 chr3 11982974 11983113 -147616670 - RMER20A LTR ERVK -243 273 131 5 676 1123 122 6 11 chr3 11983114 11983297 -147616486 + L1_Mm LINE L1 4982 5163 -720 5 676 2176 187 48 9 chr3 11983297 11983795 -147615988 + RMER17D2 LTR ERVK 258 809 0 5 676 3569 116 6 0 chr3 11983801 11984655 -147615128 + L1VL2 LINE L1 608 1465 -2150 5 676 9058 127 10 5 chr3 11984673 11986192 -147613591 + L1VL2 LINE L1 1769 3294 -321 5 676 5187 99 5 8 chr3 11986242 11986987 -147612796 + L1_Mus3 LINE L1 5887 6629 -9 5 676 261 83 0 0 chr3 11987216 11987252 -147612531 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 5 676 1206 231 132 120 chr3 11987252 11987621 -147612162 - Lx7 LINE L1 -25 7671 7312 5 676 180 0 0 0 chr3 11987621 11987641 -147612142 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 5 676 1206 231 132 120 chr3 11987641 11987887 -147611896 - Lx7 LINE L1 -385 7311 7049 5 676 242 116 23 0 chr3 11987901 11987944 -147611839 + (ATG)n Simple_repeat Simple_repeat 1 44 0 5 676 353 302 68 26 chr3 11987949 11988203 -147611580 + L1MC4a LINE L1 6605 6867 -1015 5 676 409 330 128 56 chr3 11988379 11988793 -147610990 + L1MC4a LINE L1 7432 7875 -7 5 676 356 269 88 58 chr3 11988944 11989149 -147610634 + Charlie7 DNA MER1_type 1731 1941 -671 5 676 411 21 0 0 chr3 11990725 11990773 -147609010 + (CCA)n Simple_repeat Simple_repeat 1 48 0 5 676 574 264 14 35 chr3 11990839 11990984 -147608799 + RSINE1 SINE B4 5 146 -19 5 676 183 80 0 0 chr3 11991051 11991076 -147608707 + (GGGGA)n Simple_repeat Simple_repeat 3 27 0 5 676 364 346 42 87 chr3 11991190 11991354 -147608429 - Lx8 LINE L1 -6 7467 7319 5 676 180 77 0 0 chr3 11991354 11991380 -147608403 + (CA)n Simple_repeat Simple_repeat 1 26 0 5 676 364 346 42 87 chr3 11991380 11991570 -147608213 - Lx8 LINE L1 -155 7318 7129 5 676 2317 257 53 8 chr3 11992754 11993342 -147606441 + Lx6 LINE L1 6535 7148 -312 5 676 654 168 0 0 chr3 11993342 11993503 -147606280 + T-rich Low_complexity Low_complexity 1 161 0 5 676 1041 103 0 0 chr3 11993509 11993655 -147606128 - B1_Mus1 SINE Alu -1 147 2 5 676 816 57 279 1 chr3 11993694 11993836 -147605947 - L1_Mm LINE L1 -287 5599 5417 5 676 5249 100 5 17 chr3 11993836 11994611 -147605172 + L1Md_F2 LINE L1 5817 6582 0 5 676 28 79 0 0 chr3 11994649 11994712 -147605071 + AT_rich Low_complexity Low_complexity 1 63 0 5 676 31310 17 1 0 chr3 11995663 12000000 -147599783 - L1Md_A LINE L1 -1 6581 2244 5 676 8689 26 3 18 chr3 12000000 12002042 -147597741 - L1Md_A LINE L1 -3640 2243 237 1 676 12245 76 2 2 chr3 12002938 12004581 -147595202 + L1Md_F2 LINE L1 3943 5585 -298 2 676 7113 94 4 5 chr3 12004582 12005579 -147594204 + L1Md_F2 LINE L1 5587 6582 0 2 676 285 258 0 83 chr3 12006058 12006202 -147593581 - Lx9 LINE L1 -49 7595 7464 3 676 23 54 0 0 chr3 12006922 12006959 -147592824 + AT_rich Low_complexity Low_complexity 1 37 0 4 676 476 368 67 14 chr3 12007428 12007998 -147591785 - L1MA7 LINE L1 -438 5853 5254 5 676 1133 105 52 11 chr3 12009291 12009465 -147590318 - B2_Mm2 SINE B2 -14 181 1 6 676 502 389 39 50 chr3 12009471 12009731 -147590052 + B4A SINE B4 18 274 -18 7 676 405 0 0 0 chr3 12009773 12009818 -147589965 + (CA)n Simple_repeat Simple_repeat 2 46 0 8 676 332 398 64 12 chr3 12010166 12010401 -147589382 - MER70A LTR ERVL 0 472 224 9 676 1829 105 8 4 chr3 12010401 12010668 -147589115 + L1_Mus3 LINE L1 6364 6631 -7 1 676 332 398 64 12 chr3 12010668 12010681 -147589102 - MER70A LTR ERVL -249 223 211 9 676 4727 112 10 1 chr3 12011394 12012077 -147587706 - L1_Mus4 LINE L1 -44 6592 5904 1 676 4035 182 7 3 chr3 12012075 12012802 -147586981 + L1_Mus4 LINE L1 5154 5883 0 1 676 1578 213 65 40 chr3 12012909 12013306 -147586477 + ORR1B1-int LTR MaLR 914 1320 -50 1 676 575 281 32 7 chr3 12013314 12013468 -147586315 + ORR1B1 LTR MaLR 1 158 -236 1 676 309 26 0 0 chr3 12013488 12013526 -147586257 + (TTTTG)n Simple_repeat Simple_repeat 5 42 0 1 676 751 101 143 0 chr3 12013527 12013646 -147586137 - B1_Mus1 SINE Alu -8 140 5 1 676 248 165 37 55 chr3 12013687 12013796 -147585987 + (TCTCTG)n Simple_repeat Simple_repeat 4 110 0 1 676 21 0 0 0 chr3 12013978 12013999 -147585784 + AT_rich Low_complexity Low_complexity 1 21 0 1 676 342 0 0 0 chr3 12014041 12014079 -147585704 + (TG)n Simple_repeat Simple_repeat 2 39 0 1 676 349 197 158 0 chr3 12014080 12014156 -147585627 + ORR1B1 LTR MaLR 221 308 -76 1 676 510 279 77 57 chr3 12014507 12014661 -147585122 + B3 SINE B2 3 152 -64 1 676 414 0 0 0 chr3 12014661 12014707 -147585076 + (CA)n Simple_repeat Simple_repeat 2 47 0 1 676 510 279 77 57 chr3 12014707 12014761 -147585022 + B3 SINE B2 153 214 -2 1 676 333 0 0 0 chr3 12014833 12014870 -147584913 + (TC)n Simple_repeat Simple_repeat 2 38 0 2 676 216 0 0 0 chr3 12014870 12014893 -147584890 + (TG)n Simple_repeat Simple_repeat 1 24 0 2 676 3360 38 0 2 chr3 12015163 12015560 -147584223 - MTA_Mm LTR MaLR 0 396 1 2 676 5839 91 21 7 chr3 12015560 12016424 -147583359 - MTA_Mm-int LTR MaLR 0 1098 223 2 676 927 142 59 25 chr3 12016470 12016672 -147583111 - L1_Mur3 LINE L1 -1492 4388 4180 2 676 280 56 0 0 chr3 12016672 12016708 -147583075 - U2 snRNA snRNA -152 36 1 2 676 30 83 0 0 chr3 12016855 12016927 -147582856 + AT_rich Low_complexity Low_complexity 1 72 0 2 676 183 156 0 0 chr3 12017554 12017586 -147582197 + (TA)n Simple_repeat Simple_repeat 2 33 0 2 676 3955 64 2 8 chr3 12018718 12019237 -147580546 + L1Md_F2 LINE L1 6061 6576 -6 2 676 2319 98 9 3 chr3 12021075 12021414 -147578369 + L1_Mus3 LINE L1 6290 6630 -8 2 676 310 337 33 61 chr3 12022779 12022959 -147576824 + ORR1E LTR MaLR 38 212 -147 2 676 230 184 61 0 chr3 12023021 12023070 -147576713 + ORR1E LTR MaLR 281 332 -47 2 676 985 258 60 11 chr3 12023552 12023890 -147575893 + RMER21A LTR ERV1 626 947 0 3 676 266 0 29 0 chr3 12024139 12024173 -147575610 + (TTA)n Simple_repeat Simple_repeat 2 36 0 3 676 437 221 19 39 chr3 12024846 12025001 -147574782 + Lx9 LINE L1 7493 7644 0 3 676 1943 224 44 32 chr3 12025742 12026144 -147573639 + Lx5 LINE L1 889 1293 -5793 3 676 2621 108 14 59 chr3 12026144 12026585 -147573198 - BGLII LTR ERVK 0 421 1 3 676 1943 182 114 18 chr3 12026585 12026992 -147572791 + Lx5 LINE L1 1294 1749 -4128 3 676 5825 207 45 22 chr3 12026991 12028295 -147571488 + Lx2B LINE L1 5667 7000 0 3 676 627 14 0 0 chr3 12028319 12028391 -147571392 + (GA)n Simple_repeat Simple_repeat 1 72 0 3 676 12100 191 108 113 chr3 12028391 12028544 -147571239 + Lx5 LINE L1 1755 1909 -3968 3 676 230 0 33 0 chr3 12028544 12028574 -147571209 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 3 676 12100 191 108 113 chr3 12028574 12028967 -147570816 + Lx5 LINE L1 1910 2306 -3571 3 676 1790 72 8 0 chr3 12028967 12029202 -147570581 - L1_Mus2 LINE L1 -1 6565 6329 3 676 12100 191 108 113 chr3 12029202 12030150 -147569633 + Lx5 LINE L1 2307 2994 -2883 3 676 938 191 21 0 chr3 12030150 12030344 -147569439 + Lx2A1 LINE L1 6806 7003 -5 3 676 12100 191 108 113 chr3 12030344 12031368 -147568415 + Lx5 LINE L1 2995 4002 -1875 3 676 5083 34 3 7 chr3 12031368 12031985 -147567798 + L1Md_T LINE L1 5967 6581 -1 4 676 12100 191 108 113 chr3 12031985 12032292 -147567491 + Lx5 LINE L1 4003 4304 -1573 3 676 309 26 0 0 chr3 12032292 12032330 -147567453 + (CCAA)n Simple_repeat Simple_repeat 1 38 0 4 676 12100 204 89 72 chr3 12032330 12034706 -147565077 + Lx5 LINE L1 4305 6980 -70 3 676 25 0 0 0 chr3 12034819 12034844 -147564939 + AT_rich Low_complexity Low_complexity 1 25 0 4 676 2209 188 16 11 chr3 12035344 12035797 -147563986 - L1_Mur2 LINE L1 -553 5324 4870 4 676 759 143 0 0 chr3 12035796 12035915 -147563868 + L1_Mus4 LINE L1 6172 6290 -346 4 676 2368 101 223 31 chr3 12035920 12036399 -147563384 - RLTR6_Mm LTR ERV1 -47 607 37 4 676 2006 124 16 9 chr3 12036509 12036827 -147562956 + L1_Mus4 LINE L1 6317 6636 0 4 676 226 325 35 40 chr3 12036844 12037017 -147562766 - L1M2 LINE L1 -1424 4719 4548 4 676 2208 125 50 24 chr3 12037066 12037444 -147562339 - Lx LINE L1 -11 6643 6256 4 676 2319 102 22 3 chr3 12037444 12037840 -147561943 + Lx LINE L1 5513 5916 -738 4 676 284 297 47 13 chr3 12038076 12038226 -147561557 + L1M1 LINE L1 5317 5471 -832 4 676 415 240 37 0 chr3 12038226 12038329 -147561454 + ORR1E LTR MaLR 1 107 -263 5 676 433 297 17 17 chr3 12040426 12040546 -147559237 + PB1D7 SINE Alu 1 120 0 5 676 216 174 0 0 chr3 12040696 12040712 -147559071 + A-rich Low_complexity Low_complexity 1 16 0 5 676 1056 96 0 20 chr3 12040712 12040861 -147558922 + B1_Mus2 SINE Alu 2 147 0 5 676 216 174 0 0 chr3 12040861 12040890 -147558893 + A-rich Low_complexity Low_complexity 17 45 0 5 676 24 53 0 0 chr3 12042108 12042146 -147557637 + AT_rich Low_complexity Low_complexity 1 38 0 5 676 22 0 0 0 chr3 12042159 12042181 -147557602 + AT_rich Low_complexity Low_complexity 1 22 0 5 676 326 275 62 39 chr3 12043389 12043597 -147556186 + L1M2 LINE L1 5587 5799 -492 5 676 334 151 27 0 chr3 12043894 12043967 -147555816 + (TGG)n Simple_repeat Simple_repeat 2 76 0 5 676 1565 210 3 70 chr3 12044312 12044671 -147555112 + L1_Mur2 LINE L1 583 917 -6169 5 676 4608 159 28 20 chr3 12044664 12044788 -147554995 + L1_Mur2 LINE L1 1922 2048 -3829 5 676 420 37 0 0 chr3 12044788 12044842 -147554941 + (CA)n Simple_repeat Simple_repeat 2 55 0 6 676 4608 159 28 20 chr3 12044842 12045337 -147554446 + L1_Mur2 LINE L1 2049 2548 -3329 5 676 1540 22 32 0 chr3 12045337 12045522 -147554261 + B2_Mm1a SINE B2 1 191 -2 6 676 4608 159 28 20 chr3 12045522 12045808 -147553975 + L1_Mur2 LINE L1 2549 2834 -3043 5 676 2865 269 47 29 chr3 12045804 12046637 -147553146 + Lx5 LINE L1 5759 6606 -444 6 676 1746 28 0 0 chr3 12046640 12046851 -147552932 + IAPLTR3 LTR ERVK 1 211 -115 6 676 1174 15 0 0 chr3 12046853 12046985 -147552798 + IAPLTR3-int LTR ERVK 1341 1472 -5349 6 676 12982 31 0 1 chr3 12046983 12048482 -147551301 + IAPLTR3-int LTR ERVK 5304 6801 -20 6 676 2731 43 0 0 chr3 12048482 12048805 -147550978 + IAPLTR3 LTR ERVK 1 323 -3 6 676 1820 194 13 0 chr3 12048807 12049129 -147550654 + Lx4A LINE L1 6638 6951 -107 6 676 9244 133 27 34 chr3 12049135 12051249 -147548534 + L1_Mus2 LINE L1 675 2760 -3123 6 676 309 176 0 0 chr3 12051243 12051294 -147548489 - L1_Mus3 LINE L1 -211 6427 6377 6 676 7117 96 11 2 chr3 12051292 12052598 -147547185 + L1_Mus2 LINE L1 5250 6564 -2 6 676 23 33 0 0 chr3 12052598 12052628 -147547155 + AT_rich Low_complexity Low_complexity 1 30 0 6 676 746 144 124 0 chr3 12053261 12053414 -147546369 + ORR1B1 LTR MaLR 182 353 -41 6 676 236 214 0 0 chr3 12053415 12053457 -147546326 + L1VL4 LINE L1 194 235 -6067 6 676 10058 96 43 23 chr3 12053467 12055150 -147544633 + MusHAL1 LINE L1 402 2118 -594 7 676 983 113 13 0 chr3 12055156 12055315 -147544468 + MusHAL1 LINE L1 2498 2658 -54 7 676 246 32 0 0 chr3 12055622 12055653 -147544130 + (GTTTG)n Simple_repeat Simple_repeat 3 33 0 7 676 915 129 7 0 chr3 12055654 12055793 -147543990 - B1_Mus1 SINE Alu -8 140 1 7 676 298 303 56 24 chr3 12055957 12056082 -147543701 - L2a LINE L2 0 3426 3298 7 676 402 311 38 0 chr3 12056796 12056902 -147542881 + RSINE1 SINE B4 36 145 -20 7 676 1377 254 64 64 chr3 12056921 12057421 -147542362 + RLTR20B3 LTR ERVK 22 521 -56 7 676 26 0 0 0 chr3 12057433 12057459 -147542324 + AT_rich Low_complexity Low_complexity 1 26 0 7 676 309 272 49 0 chr3 12057633 12057714 -147542069 + RSINE1 SINE B4 11 95 -70 7 676 685 125 13 0 chr3 12057714 12057866 -147541917 + (GA)n Simple_repeat Simple_repeat 1 154 0 7 676 1554 271 11 6 chr3 12057943 12058307 -147541476 + MTD LTR MaLR 46 411 -8 7 84 1892 251 56 3 chr3 12058614 12058966 -147540817 + L1_Mur3 LINE L1 730 1099 -6629 8 677 459 73 0 0 chr3 12058966 12059034 -147540749 + (CA)n Simple_repeat Simple_repeat 1 68 0 8 677 1892 235 30 22 chr3 12059034 12059416 -147540367 + L1_Mur3 LINE L1 1100 1492 -4388 8 677 2586 115 43 3 chr3 12059417 12059808 -147539975 - MTB_Mm LTR MaLR 0 407 1 8 677 1729 126 61 26 chr3 12059808 12060151 -147539632 - MTB_Mm-int LTR MaLR 0 1098 744 8 677 315 0 0 0 chr3 12060151 12060186 -147539597 + (T)n Simple_repeat Simple_repeat 1 35 0 8 677 817 298 29 13 chr3 12060353 12060385 -147539398 + L1M5 LINE L1 5462 5495 -699 8 677 1306 19 6 0 chr3 12060385 12060546 -147539237 - L1Md_A LINE L1 -2 6580 6419 8 677 2476 21 0 0 chr3 12060546 12060830 -147538953 + L1_Mm LINE L1 5468 5751 -132 8 677 4226 179 45 11 chr3 12060830 12061646 -147538137 - MTC-int LTR MaLR -409 849 6 8 677 6735 209 48 19 chr3 12061654 12063355 -147536428 + L1_Mur3 LINE L1 2797 4547 -1333 8 677 5119 279 31 73 chr3 12063351 12065191 -147534592 + Lx6 LINE L1 5690 7452 -8 8 677 546 166 0 0 chr3 12065347 12065498 -147534285 + A-rich Low_complexity Low_complexity 1 151 0 8 677 23 0 0 0 chr3 12066660 12066683 -147533100 + AT_rich Low_complexity Low_complexity 1 23 0 9 677 593 52 41 49 chr3 12067774 12067896 -147531887 - L1Md_F2 LINE L1 0 6582 6462 9 677 29 28 0 0 chr3 12068391 12068427 -147531356 + AT_rich Low_complexity Low_complexity 1 36 0 9 677 241 264 148 43 chr3 12068534 12068696 -147531087 + MIRb SINE MIR 90 268 0 9 677 23 33 0 0 chr3 12068849 12068879 -147530904 + AT_rich Low_complexity Low_complexity 1 30 0 9 677 198 0 0 0 chr3 12068934 12068956 -147530827 + (TA)n Simple_repeat Simple_repeat 2 23 0 9 677 745 284 9 33 chr3 12068985 12069200 -147530583 + B3 SINE B2 1 210 -6 9 677 374 304 22 0 chr3 12069221 12069313 -147530470 - B3 SINE B2 -6 210 117 9 677 387 0 0 0 chr3 12069735 12069778 -147530005 + (TG)n Simple_repeat Simple_repeat 2 44 0 9 677 3246 169 98 13 chr3 12070777 12071468 -147528315 + RMER6A LTR ERVK 3 752 -4 9 677 1707 250 175 16 chr3 12071769 12072376 -147527407 - Lx9 LINE L1 -7 7637 6935 1 677 1682 248 37 7 chr3 12072707 12073113 -147526670 + Lx9 LINE L1 6414 6831 -813 1 677 26 0 0 0 chr3 12073142 12073168 -147526615 + AT_rich Low_complexity Low_complexity 1 26 0 1 677 36 70 0 0 chr3 12073417 12073488 -147526295 + AT_rich Low_complexity Low_complexity 1 71 0 1 677 1733 207 72 27 chr3 12074376 12074779 -147525004 - Lx4A LINE L1 -3 7055 6635 1 677 1336 174 62 0 chr3 12074822 12075081 -147524702 - Lx4A LINE L1 -3 6651 6377 1 677 492 18 0 0 chr3 12075731 12075788 -147523995 + (GA)n Simple_repeat Simple_repeat 2 58 0 1 677 438 20 0 0 chr3 12075970 12076021 -147523762 + (TAGA)n Simple_repeat Simple_repeat 2 52 0 1 677 639 271 39 37 chr3 12076028 12076304 -147523479 - Lx7 LINE L1 -1869 5827 5549 1 677 1169 224 123 9 chr3 12076584 12077007 -147522776 + RMER6C LTR ERVK 220 690 0 1 677 204 40 0 0 chr3 12078997 12079022 -147520761 + (TA)n Simple_repeat Simple_repeat 1 25 0 1 677 218 245 0 0 chr3 12079494 12079543 -147520240 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 677 24 32 0 0 chr3 12079941 12079972 -147519811 + AT_rich Low_complexity Low_complexity 1 31 0 1 677 267 298 91 70 chr3 12080049 12080334 -147519449 - L1ME2 LINE L1 -120 6044 5754 1 677 227 276 51 26 chr3 12080512 12080590 -147519193 - L1ME2 LINE L1 -637 5525 5446 1 677 293 321 7 0 chr3 12080896 12080997 -147518786 + Lx7 LINE L1 6647 6751 -709 1 677 261 207 0 0 chr3 12080999 12081081 -147518702 + A-rich Low_complexity Low_complexity 1 82 0 1 677 1207 314 86 32 chr3 12081085 12081618 -147518165 + Lx5 LINE L1 6470 7031 -19 1 677 230 145 8 56 chr3 12082999 12083128 -147516655 + (TTTG)n Simple_repeat Simple_repeat 1 122 0 1 677 575 252 0 0 chr3 12083132 12083263 -147516520 - B1_Mus1 SINE Alu -15 133 3 1 677 22 80 0 0 chr3 12083414 12083464 -147516319 + AT_rich Low_complexity Low_complexity 1 50 0 1 677 1366 265 101 73 chr3 12084336 12084931 -147514852 + RLTR18 LTR ERVK 1 512 0 1 677 414 57 0 0 chr3 12085636 12085689 -147514094 + (CA)n Simple_repeat Simple_repeat 2 54 0 1 677 5052 103 5 18 chr3 12085714 12086515 -147513268 + MusHAL1 LINE L1 802 1592 -1120 1 677 880 171 187 8 chr3 12086510 12086751 -147513032 + Lx9 LINE L1 7355 7638 -6 1 677 231 395 42 8 chr3 12087136 12087256 -147512527 + B1F1 SINE Alu 1 124 -25 1 677 15792 198 62 43 chr3 12087514 12088773 -147511010 + L1_Mur3 LINE L1 806 2037 -3840 1 677 234 0 0 0 chr3 12088773 12088799 -147510984 + (CA)n Simple_repeat Simple_repeat 2 27 0 1 677 15792 196 40 47 chr3 12088799 12091810 -147507973 + L1_Mur3 LINE L1 2038 5133 -744 1 677 2834 240 40 6 chr3 12091833 12092465 -147507318 + Lx5 LINE L1 6138 6790 -260 1 677 375 346 61 82 chr3 12093396 12093676 -147506107 + B4A SINE B4 3 276 -16 1 677 189 187 26 13 chr3 12093729 12093805 -147505978 + GA-rich Low_complexity Low_complexity 2 78 0 1 677 225 65 0 0 chr3 12095091 12095122 -147504661 + (A)n Simple_repeat Simple_repeat 1 31 0 1 677 246 265 114 13 chr3 12096122 12096271 -147503512 - Lx9 LINE L1 -4 7640 7477 1 677 283 264 18 30 chr3 12096402 12096570 -147503213 + A-rich Low_complexity Low_complexity 2 167 0 1 677 4852 279 31 21 chr3 12096713 12097477 -147502306 - Lx6 LINE L1 -151 7545 6526 1 677 1523 195 50 74 chr3 12097477 12097881 -147501902 - ORR1B1 LTR MaLR 0 394 1 1 677 4852 279 32 20 chr3 12097881 12098516 -147501267 - Lx6 LINE L1 -935 6525 5874 1 677 779 216 42 93 chr3 12098516 12098559 -147501224 - RMER19B LTR ERVK 0 902 872 1 677 5960 58 1 4 chr3 12098559 12099331 -147500452 - L1Md_F2 LINE L1 0 6582 5813 1 677 779 216 42 93 chr3 12099331 12099355 -147500428 - RMER19B LTR ERVK -31 871 854 1 677 2933 110 12 5 chr3 12099355 12099785 -147499998 - RLTR10C LTR ERVK -3 433 1 1 677 779 216 42 93 chr3 12099785 12099930 -147499853 - RMER19B LTR ERVK -49 853 700 1 677 2434 233 65 24 chr3 12099904 12100528 -147499255 - RMER19B LTR ERVK -321 581 1 1 677 1574 240 44 0 chr3 12100528 12100915 -147498868 - Lx6 LINE L1 -3 5877 5474 1 677 393 149 0 0 chr3 12101579 12101646 -147498137 + (ATG)n Simple_repeat Simple_repeat 1 67 0 1 677 22 35 0 0 chr3 12102545 12102574 -147497209 + AT_rich Low_complexity Low_complexity 1 29 0 1 677 243 133 0 0 chr3 12102636 12102681 -147497102 + (TA)n Simple_repeat Simple_repeat 1 45 0 1 677 21 0 0 0 chr3 12102786 12102807 -147496976 + AT_rich Low_complexity Low_complexity 1 21 0 1 677 1509 203 0 0 chr3 12103620 12103910 -147495873 + Lx2 LINE L1 6708 6997 0 1 677 333 337 38 77 chr3 12104221 12104430 -147495353 + B3 SINE B2 3 203 -13 1 677 1168 266 56 47 chr3 12105018 12105426 -147494357 + MTD LTR MaLR 1 395 -24 1 677 234 62 0 0 chr3 12106477 12106509 -147493274 + (GTTTG)n Simple_repeat Simple_repeat 2 33 0 1 677 233 329 0 41 chr3 12106922 12106995 -147492788 + B1F1 SINE Alu 78 147 -2 1 677 32820 47 1 0 chr3 12107170 12111318 -147488465 + L1_Mur3 LINE L1 1215 5373 -510 1 677 1311 25 0 0 chr3 12111314 12111477 -147488306 - L1_Mm LINE L1 -2516 3367 3205 1 677 5287 38 0 0 chr3 12111477 12112106 -147487677 + L1Md_T LINE L1 5952 6580 -2 1 677 180 0 0 0 chr3 12112922 12112942 -147486841 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 1 677 3175 41 0 0 chr3 12113116 12113504 -147486279 - MTA_Mm LTR MaLR -8 388 1 1 677 29 28 0 0 chr3 12114578 12114614 -147485169 + AT_rich Low_complexity Low_complexity 1 36 0 1 677 401 145 0 13 chr3 12114677 12114754 -147485029 + GA-rich Low_complexity Low_complexity 3 78 0 1 677 333 68 0 0 chr3 12114754 12114798 -147484985 + (CCA)n Simple_repeat Simple_repeat 3 46 0 1 677 398 211 114 0 chr3 12116676 12116799 -147482984 + Lx9 LINE L1 7380 7516 -128 1 677 738 213 0 30 chr3 12116800 12116969 -147482814 + ORR1B1 LTR MaLR 1 164 -230 1 677 5717 149 226 0 chr3 12116969 12118151 -147481632 + L1_Mur2 LINE L1 4133 5581 -296 1 677 7997 52 1 2 chr3 12118151 12119146 -147480637 + L1Md_F2 LINE L1 5588 6581 -1 1 677 630 288 173 39 chr3 12119294 12119601 -147480182 - Lx6 LINE L1 -27 7433 7086 1 677 2545 89 0 25 chr3 12119605 12119972 -147479811 - L1_Mm LINE L1 -257 5626 5269 1 677 4810 113 23 40 chr3 12119973 12120051 -147479732 + L1_Mus3 LINE L1 5874 5951 -687 1 677 1215 105 10 20 chr3 12120051 12120246 -147479537 + B2_Mm1t SINE B2 1 193 0 1 677 4810 113 23 40 chr3 12120246 12120938 -147478845 + L1_Mus3 LINE L1 5952 6631 -7 1 677 4197 171 27 22 chr3 12121449 12122228 -147477555 + Lx2B LINE L1 6218 7000 0 1 677 245 315 0 0 chr3 12122235 12122324 -147477459 + A-rich Low_complexity Low_complexity 1 89 0 1 677 294 440 27 16 chr3 12122688 12122875 -147476908 + LTR33 LTR ERVL 14 202 -313 1 677 2821 110 20 26 chr3 12123407 12123784 -147475999 + L1_Mm LINE L1 5230 5586 -297 1 677 7203 67 30 8 chr3 12123784 12124757 -147475026 + L1Md_F2 LINE L1 5587 6580 -2 1 677 2821 99 18 27 chr3 12124757 12124844 -147474939 + L1_Mm LINE L1 5587 5669 -214 1 677 627 39 0 0 chr3 12124888 12124966 -147474817 + (CA)n Simple_repeat Simple_repeat 1 78 0 1 677 35257 52 2 16 chr3 12125245 12130429 -147469354 + L1Md_A LINE L1 476 5586 -297 1 677 8289 39 0 0 chr3 12130429 12131425 -147468358 + L1Md_A LINE L1 5587 6582 0 1 677 1736 94 12 8 chr3 12132572 12132830 -147466953 - L1_Mus3 LINE L1 -2 6636 6378 1 677 4253 91 4 1 chr3 12132831 12133595 -147466188 + L1_Mus2 LINE L1 5252 6015 -551 1 677 2609 187 74 92 chr3 12134135 12134180 -147465603 + RMER6C LTR ERVK 1 46 -644 1 677 2861 24 101 5 chr3 12134180 12134555 -147465228 + IAPLTR2a LTR ERVK 1 411 0 1 677 2609 187 74 92 chr3 12134555 12135212 -147464571 + RMER6C LTR ERVK 47 690 0 1 677 251 324 65 0 chr3 12135856 12135995 -147463788 + L1MEc LINE L1 54 201 -6199 1 677 23 54 0 0 chr3 12137079 12137116 -147462667 + AT_rich Low_complexity Low_complexity 1 37 0 1 677 342 0 0 0 chr3 12137875 12137913 -147461870 + (TTTA)n Simple_repeat Simple_repeat 1 38 0 1 677 316 158 9 0 chr3 12137928 12137992 -147461791 - B2_Mm2 SINE B2 -102 114 47 1 677 1111 131 17 11 chr3 12138058 12138235 -147461548 - B2_Mm1t SINE B2 -14 179 2 1 677 204 70 0 65 chr3 12139391 12139437 -147460346 + (TA)n Simple_repeat Simple_repeat 2 44 0 1 677 204 67 0 0 chr3 12140693 12140723 -147459060 + (CAAAAA)n Simple_repeat Simple_repeat 3 32 0 1 677 874 228 104 0 chr3 12140723 12140973 -147458810 + Lx9 LINE L1 7354 7629 -15 1 677 24 0 0 0 chr3 12140981 12141005 -147458778 + AT_rich Low_complexity Low_complexity 1 24 0 1 677 30 0 0 0 chr3 12142538 12142568 -147457215 + AT_rich Low_complexity Low_complexity 1 30 0 1 677 1182 204 7 28 chr3 12142996 12143278 -147456505 + Lx5 LINE L1 3777 4052 -1828 1 677 2032 105 32 0 chr3 12143279 12143593 -147456190 - IAPEY2_LTR LTR ERVK 0 357 34 1 677 7860 227 43 15 chr3 12143604 12146060 -147453723 + Lx5 LINE L1 4046 6805 -655 1 677 201 196 0 0 chr3 12146140 12146191 -147453592 + GA-rich Low_complexity Low_complexity 2 52 0 1 677 1732 190 6 25 chr3 12147089 12147445 -147452338 + Lx4B LINE L1 6710 7058 0 1 677 282 157 0 0 chr3 12147905 12147956 -147451827 + Lx5 LINE L1 6920 6970 -3 1 677 24 32 0 0 chr3 12149002 12149033 -147450750 + AT_rich Low_complexity Low_complexity 1 31 0 1 677 233 254 66 33 chr3 12149135 12149196 -147450587 + B1F SINE Alu 54 116 -33 1 677 328 348 7 0 chr3 12149196 12149334 -147450449 + Lx9 LINE L1 7269 7407 -237 1 677 1990 224 37 12 chr3 12149361 12149764 -147450019 - MTC LTR MaLR -7 414 2 1 677 489 47 0 0 chr3 12149828 12149892 -147449891 + (TG)n Simple_repeat Simple_repeat 1 64 0 1 677 287 252 97 8 chr3 12149894 12150018 -147449765 + Lx9 LINE L1 7502 7636 -8 1 677 263 326 100 35 chr3 12150257 12150457 -147449326 - B3 SINE B2 0 216 4 1 677 22 0 0 0 chr3 12151069 12151091 -147448692 + AT_rich Low_complexity Low_complexity 1 22 0 1 677 22 0 0 0 chr3 12152676 12152698 -147447085 + AT_rich Low_complexity Low_complexity 1 22 0 1 677 25 75 0 0 chr3 12153388 12153441 -147446342 + AT_rich Low_complexity Low_complexity 1 53 0 1 677 3623 37 0 0 chr3 12154451 12154887 -147444896 - L1Md_A LINE L1 0 6582 6147 1 677 5726 147 46 32 chr3 12155348 12157157 -147442626 + L1VL1 LINE L1 142 1982 -1716 1 677 7650 145 3 71 chr3 12157155 12157936 -147441847 + L1_Mm LINE L1 4325 5095 -788 1 677 1086 102 0 0 chr3 12157936 12158083 -147441700 + B1_Mm SINE Alu 1 147 0 1 677 7650 145 3 71 chr3 12158083 12158159 -147441624 + L1_Mm LINE L1 5096 5096 -787 1 677 489 17 0 0 chr3 12158159 12158217 -147441566 + (CA)n Simple_repeat Simple_repeat 2 59 0 2 677 7650 145 3 71 chr3 12158217 12158808 -147440975 + L1_Mm LINE L1 5096 5675 -208 1 677 2437 193 44 25 chr3 12158829 12159084 -147440699 + RLTR31_Mm LTR ERVK 1 258 -303 2 677 5230 89 49 1 chr3 12159084 12159840 -147439943 + L1_Mus2 LINE L1 5774 6565 -1 2 677 2437 193 44 25 chr3 12159840 12160132 -147439651 + RLTR31_Mm LTR ERVK 259 558 -3 2 677 3059 224 138 81 chr3 12160135 12160678 -147439105 + RMER3D-int LTR ERVK 1008 1095 -1747 2 677 870 73 0 0 chr3 12160678 12160802 -147438981 + L1_Mus2 LINE L1 6443 6566 0 2 677 3059 186 35 71 chr3 12160802 12161549 -147438234 + RMER3D-int LTR ERVK 1096 1822 -1020 2 677 3103 208 50 40 chr3 12161576 12162432 -147437351 + RMER3D-int LTR ERVK 1961 2825 -17 2 677 219 36 0 0 chr3 12162432 12162460 -147437323 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 2 677 3103 208 50 40 chr3 12162460 12162474 -147437309 + RMER3D-int LTR ERVK 2826 2839 -3 2 677 2105 184 48 63 chr3 12162476 12163093 -147436690 + RLTR31_Mm LTR ERVK 1 692 0 2 677 37 81 0 0 chr3 12163236 12163322 -147436461 + AT_rich Low_complexity Low_complexity 1 86 0 2 677 27 0 0 0 chr3 12163478 12163505 -147436278 + AT_rich Low_complexity Low_complexity 1 27 0 2 677 943 132 0 0 chr3 12164304 12164440 -147435343 + B1_Mus2 SINE Alu 2 137 -10 2 677 227 0 93 0 chr3 12164441 12164484 -147435299 + (CAAAA)n Simple_repeat Simple_repeat 3 49 0 2 677 242 339 33 57 chr3 12164766 12164888 -147434895 + MLT1A0 LTR MaLR 244 362 -3 2 677 477 122 0 0 chr3 12165520 12165594 -147434189 + (TA)n Simple_repeat Simple_repeat 1 74 0 2 677 3863 242 51 39 chr3 12165634 12165811 -147433972 - Lx6 LINE L1 -146 7314 7128 2 677 273 109 0 0 chr3 12165811 12165857 -147433926 + (TAATG)n Simple_repeat Simple_repeat 5 50 0 2 677 3863 242 51 39 chr3 12165857 12165906 -147433877 - Lx6 LINE L1 -333 7127 7077 2 677 2568 73 15 0 chr3 12165906 12166247 -147433536 - ORR1A1 LTR MaLR 0 346 1 2 677 3863 242 51 39 chr3 12166247 12166966 -147432817 - Lx6 LINE L1 -384 7076 6357 2 677 417 70 0 0 chr3 12167037 12167094 -147432689 + (GA)n Simple_repeat Simple_repeat 2 58 0 2 677 2486 231 53 15 chr3 12167397 12168393 -147431390 - Lx6 LINE L1 -1323 6373 5330 2 677 234 81 0 0 chr3 12168872 12168909 -147430874 + (TCTG)n Simple_repeat Simple_repeat 2 38 0 2 677 326 264 37 23 chr3 12169108 12169242 -147430541 - L1M5 LINE L1 -443 5721 5585 2 677 21 57 0 0 chr3 12169290 12169325 -147430458 + AT_rich Low_complexity Low_complexity 1 35 0 2 677 22 56 0 0 chr3 12170700 12170736 -147429047 + AT_rich Low_complexity Low_complexity 1 36 0 2 677 24 85 0 0 chr3 12171647 12171706 -147428077 + AT_rich Low_complexity Low_complexity 1 59 0 2 677 791 307 105 31 chr3 12173324 12173714 -147426069 - MTD LTR MaLR 0 419 1 2 677 8812 115 19 19 chr3 12174261 12174294 -147425489 - MusHAL1 LINE L1 -390 2322 2294 2 677 1049 63 0 7 chr3 12174294 12174437 -147425346 + (TTTC)n Simple_repeat Simple_repeat 3 144 0 2 677 8812 115 19 19 chr3 12174437 12175890 -147423893 - MusHAL1 LINE L1 -419 2293 836 2 677 1332 158 35 32 chr3 12175877 12176190 -147423593 - MusHAL1 LINE L1 -2215 497 184 2 677 329 338 19 56 chr3 12176383 12176543 -147423240 - B3A SINE B2 -1 197 44 2 677 30 45 0 0 chr3 12176576 12176620 -147423163 + AT_rich Low_complexity Low_complexity 1 44 0 2 677 396 0 0 0 chr3 12176663 12176707 -147423076 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 2 677 921 105 8 0 chr3 12176708 12176841 -147422942 - B1_Mus2 SINE Alu -12 135 2 2 677 490 296 101 35 chr3 12177136 12177483 -147422300 + L1_Rod LINE L1 5463 5832 -15 2 677 634 268 24 14 chr3 12177933 12178145 -147421638 + B3 SINE B2 2 215 -1 2 677 1164 230 30 58 chr3 12178902 12179255 -147420528 - Lx2B LINE L1 -706 6270 6004 2 677 2669 62 11 0 chr3 12179255 12179613 -147420170 - L1Md_F2 LINE L1 -1 6581 6220 2 677 1164 225 19 59 chr3 12179613 12179759 -147420024 - Lx2B LINE L1 -997 6003 5863 2 677 27 29 0 0 chr3 12180075 12180109 -147419674 + AT_rich Low_complexity Low_complexity 1 34 0 2 677 431 318 21 89 chr3 12180226 12180461 -147419322 + Lx9 LINE L1 6680 6898 -746 2 677 451 336 49 31 chr3 12180509 12180899 -147418884 + Lx9 LINE L1 7228 7624 -20 2 677 22 70 0 0 chr3 12180985 12181028 -147418755 + AT_rich Low_complexity Low_complexity 1 43 0 2 677 38 85 0 0 chr3 12181185 12181279 -147418504 + AT_rich Low_complexity Low_complexity 1 94 0 2 677 702 286 36 32 chr3 12181309 12181587 -147418196 - L1_Rod LINE L1 -933 4914 4636 2 677 880 326 87 47 chr3 12181629 12182283 -147417500 + Lx9 LINE L1 6785 7464 -180 2 677 1473 251 56 3 chr3 12182283 12182638 -147417145 + ORR1D1 LTR MaLR 1 374 0 2 677 1539 259 58 7 chr3 12182639 12182866 -147416917 + ORR1D1-int LTR MaLR 2 246 -1124 2 677 186 43 0 0 chr3 12182866 12182889 -147416894 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2 677 1539 259 58 7 chr3 12182889 12183093 -147416690 + ORR1D1-int LTR MaLR 247 455 -915 2 677 2368 259 103 20 chr3 12183063 12183764 -147416019 + ORR1D1-int LTR MaLR 612 1370 0 2 677 258 268 0 0 chr3 12183819 12183875 -147415908 + ORR1D1 LTR MaLR 106 161 -213 2 677 24 32 0 0 chr3 12184023 12184054 -147415729 + AT_rich Low_complexity Low_complexity 1 31 0 2 677 262 289 0 98 chr3 12185297 12185389 -147414394 - B1F SINE Alu -54 95 13 2 677 435 100 0 0 chr3 12187939 12188009 -147411774 + (CA)n Simple_repeat Simple_repeat 1 70 0 2 677 234 128 0 0 chr3 12188095 12188134 -147411649 + (TG)n Simple_repeat Simple_repeat 2 40 0 2 677 4396 245 57 10 chr3 12188238 12189523 -147410260 - L1_Mur3 LINE L1 -4455 1425 42 2 678 346 313 82 0 chr3 12189825 12189972 -147409811 - L1M2 LINE L1 -1242 4901 4743 2 678 323 362 16 54 chr3 12190212 12190344 -147409439 - L1M2 LINE L1 -1525 4618 4489 2 678 225 65 0 0 chr3 12190344 12190375 -147409408 + (TG)n Simple_repeat Simple_repeat 2 32 0 2 678 323 362 16 54 chr3 12190375 12190484 -147409299 - L1M2 LINE L1 -1655 4488 4386 2 678 251 157 20 0 chr3 12191625 12191676 -147408107 + (TG)n Simple_repeat Simple_repeat 2 53 0 2 678 328 359 62 50 chr3 12191676 12192013 -147407770 - Lx8 LINE L1 -172 7301 6961 2 678 270 56 0 0 chr3 12194104 12194140 -147405643 + (TTTTA)n Simple_repeat Simple_repeat 5 40 0 2 678 372 43 0 0 chr3 12194151 12194197 -147405586 + (TTAA)n Simple_repeat Simple_repeat 3 48 0 2 678 1049 116 0 0 chr3 12194197 12194344 -147405439 - B1_Mus1 SINE Alu -1 147 1 2 678 390 129 0 0 chr3 12195533 12195595 -147404188 + (TA)n Simple_repeat Simple_repeat 1 62 0 2 678 214 162 0 0 chr3 12195643 12195680 -147404103 + (CA)n Simple_repeat Simple_repeat 2 38 0 2 678 1013 59 0 0 chr3 12196345 12196481 -147403302 - L1_Mus1 LINE L1 0 6567 6432 2 678 344 314 54 39 chr3 12196882 12197011 -147402772 + MTE2b LTR MaLR 240 370 -9 2 678 254 225 37 24 chr3 12197027 12197109 -147402674 + MLT1A LTR MaLR 292 374 0 2 678 28995 123 29 24 chr3 12197706 12204580 -147395203 + Lx3A LINE L1 16 6962 -19 2 678 270 0 0 0 chr3 12204583 12204613 -147395170 + (TAAA)n Simple_repeat Simple_repeat 4 33 0 2 678 565 265 46 7 chr3 12204706 12204858 -147394925 + MTD LTR MaLR 4 161 -258 2 678 1361 161 79 14 chr3 12204887 12205165 -147394618 + Lx LINE L1 6359 6654 0 2 678 462 235 0 38 chr3 12205166 12205352 -147394431 + A-rich Low_complexity Low_complexity 2 180 0 2 678 1006 234 34 0 chr3 12205376 12205585 -147394198 + MTD LTR MaLR 196 411 -8 2 678 1077 321 45 3 chr3 12205910 12206263 -147393520 - MTE2b LTR MaLR -4 375 8 2 678 1964 96 0 3 chr3 12206792 12207074 -147392709 + L1_Mus1 LINE L1 6287 6567 0 2 678 262 0 26 26 chr3 12207245 12207284 -147392499 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 2 678 22 0 0 0 chr3 12207919 12207941 -147391842 + AT_rich Low_complexity Low_complexity 1 22 0 2 678 879 335 104 15 chr3 12207968 12208499 -147391284 - Lx8 LINE L1 -8 7465 6888 2 678 554 298 70 30 chr3 12208501 12208702 -147391081 - Lx8 LINE L1 -797 6676 6468 2 678 675 326 6 8 chr3 12210154 12210419 -147389364 + Lx9 LINE L1 6899 7290 -354 2 678 652 312 72 50 chr3 12211065 12211631 -147388152 - L1MA7 LINE L1 0 6291 5713 2 678 912 297 121 32 chr3 12211812 12212862 -147386921 - L1MA7 LINE L1 -875 5425 4263 2 678 334 276 171 11 chr3 12213160 12213446 -147386337 - L1MA7 LINE L1 -3111 3032 2701 2 678 315 0 0 0 chr3 12213468 12213503 -147386280 + (TG)n Simple_repeat Simple_repeat 2 36 0 2 678 305 232 148 20 chr3 12213578 12213679 -147386104 - L1M4 LINE L1 -3622 2524 2411 2 678 204 135 0 0 chr3 12214284 12214321 -147385462 + (TTTA)n Simple_repeat Simple_repeat 4 40 0 2 678 324 0 0 0 chr3 12214367 12214403 -147385380 + (TG)n Simple_repeat Simple_repeat 1 36 0 2 678 450 0 0 0 chr3 12214403 12214452 -147385331 + (GA)n Simple_repeat Simple_repeat 1 50 0 2 678 394 19 0 0 chr3 12215308 12215361 -147384422 - L1Md_F3 LINE L1 -12 6572 6520 2 678 3487 64 125 10 chr3 12215395 12215899 -147383884 - LTRIS2 LTR ERV1 0 564 3 2 678 564 29 0 0 chr3 12217297 12217367 -147382416 + (CA)n Simple_repeat Simple_repeat 2 71 0 2 678 578 291 44 58 chr3 12218061 12218287 -147381496 + LTRIS4 LTR ERV1 235 457 -50 2 678 1316 12 132 0 chr3 12218550 12218716 -147381067 - B2_Mm1a SINE B2 -4 189 2 2 678 360 327 62 80 chr3 12218734 12219073 -147380710 - BLACKJACK DNA AcHobo -2191 753 421 2 678 1328 172 18 33 chr3 12219114 12219345 -147380438 - RMER17C LTR ERVK 0 410 181 2 678 740 11 0 11 chr3 12219345 12219435 -147380348 + (GAGAA)n Simple_repeat Simple_repeat 5 93 0 2 678 1328 172 18 33 chr3 12219435 12219539 -147380244 - RMER17C LTR ERVK -230 180 80 2 678 343 167 17 0 chr3 12219718 12219778 -147380005 - B1_Mur2 SINE Alu -12 137 77 2 678 372 308 23 14 chr3 12219982 12220173 -147379610 + L1_Mur3 LINE L1 2316 2532 -3315 2 678 234 0 0 0 chr3 12220198 12220224 -147379559 + (T)n Simple_repeat Simple_repeat 1 26 0 2 678 1490 226 80 24 chr3 12220226 12220602 -147379181 - MTB_Mm LTR MaLR -10 397 1 2 678 598 168 0 71 chr3 12221108 12221249 -147378534 - RLTR10A LTR ERVK 0 411 281 2 678 276 42 0 41 chr3 12221269 12221318 -147378465 - RLTR10A LTR ERVK -85 305 259 2 678 2253 48 13 6 chr3 12221358 12221670 -147378113 - RLTR10 LTR ERVK -76 314 1 2 678 8765 12 0 2 chr3 12221672 12222669 -147377114 - RLTR10-int LTR ERVK -3 1984 990 2 678 346 238 54 31 chr3 12222751 12222881 -147376902 - RLTR10-int LTR ERVK -5987 1594 1462 2 678 5300 42 8 38 chr3 12222945 12223663 -147376120 - RLTR10-int LTR ERVK -989 998 302 2 678 613 168 0 71 chr3 12223663 12223804 -147375979 - RLTR10 LTR ERVK 0 411 281 2 678 2313 52 13 6 chr3 12223914 12224226 -147375557 - RLTR10 LTR ERVK -76 314 1 2 678 2123 324 48 9 chr3 12224278 12225198 -147374585 + Lx8 LINE L1 6292 7247 -226 2 678 464 156 11 0 chr3 12225215 12225305 -147374478 + GA-rich Low_complexity Low_complexity 2 92 0 2 678 5932 30 27 31 chr3 12225506 12226419 -147373364 - RLTR13B2 LTR ERVK 0 893 1 2 678 2169 142 182 0 chr3 12226702 12227152 -147372631 - RLTR47_MM LTR ERV1 0 532 1 2 678 237 254 0 0 chr3 12227386 12227445 -147372338 + A-rich Low_complexity Low_complexity 1 59 0 2 678 265 247 13 13 chr3 12227636 12227714 -147372069 + (TA)n Simple_repeat Simple_repeat 2 79 0 2 678 1306 206 39 100 chr3 12227820 12228296 -147371487 + RMER16 LTR ERVK 1 531 -2 2 678 297 68 0 0 chr3 12228378 12228422 -147371361 + (T)n Simple_repeat Simple_repeat 1 44 0 2 678 297 348 7 7 chr3 12228468 12228610 -147371173 - B1_Mur1 SINE Alu -6 143 2 2 678 28 48 0 0 chr3 12229354 12229396 -147370387 + AT_rich Low_complexity Low_complexity 1 42 0 2 678 33504 50 1 5 chr3 12230369 12235857 -147363926 + L1Md_T LINE L1 30 5589 -297 2 678 8350 36 1 0 chr3 12235857 12236852 -147362931 + L1Md_T LINE L1 5590 6585 0 2 678 24 32 0 0 chr3 12237234 12237265 -147362518 + AT_rich Low_complexity Low_complexity 1 31 0 3 678 207 69 0 0 chr3 12237486 12237515 -147362268 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 3 678 425 317 86 0 chr3 12237882 12238068 -147361715 + L1_Mur3 LINE L1 520 721 -7007 3 678 826 236 83 12 chr3 12238285 12238538 -147361245 + L1_Mur3 LINE L1 868 1138 -6590 3 678 964 123 11 53 chr3 12238566 12238755 -147361028 - Lx5 LINE L1 -1105 5945 5765 3 678 654 291 145 33 chr3 12238755 12239086 -147360697 - RLTR9A LTR ERVK 0 368 1 3 678 1894 174 46 18 chr3 12239087 12239480 -147360303 - L1_Mur2 LINE L1 -114 5763 5360 3 678 2501 264 84 13 chr3 12239489 12240235 -147359548 + Lx5 LINE L1 6240 7038 -12 3 678 198 0 0 0 chr3 12240236 12240258 -147359525 + (TTAA)n Simple_repeat Simple_repeat 1 22 0 3 678 2697 226 58 50 chr3 12240280 12241354 -147358429 + L1_Mur3 LINE L1 1142 2233 -3647 3 678 844 238 75 43 chr3 12241356 12241703 -147358080 + L1_Mur3 LINE L1 3339 3696 -2184 3 678 198 0 0 0 chr3 12242410 12242432 -147357351 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 3 678 774 257 37 106 chr3 12242911 12243316 -147356467 + L1_Mur3 LINE L1 3695 4071 -1809 3 678 719 273 33 133 chr3 12243355 12243993 -147355790 + Lx7 LINE L1 7123 7696 0 3 678 22 56 0 0 chr3 12244004 12244040 -147355743 + AT_rich Low_complexity Low_complexity 1 36 0 3 678 449 351 82 43 chr3 12244136 12244598 -147355185 - RMER5 LTR ERV1 -3 531 52 3 678 6633 52 1 2 chr3 12244822 12245652 -147354131 - L1Md_F3 LINE L1 -14 6570 5742 3 678 537 319 62 6 chr3 12246264 12246425 -147353358 - B3A SINE B2 -28 170 1 3 678 3095 160 64 4 chr3 12247786 12248345 -147351438 - Lx3B LINE L1 -3 6970 6378 3 678 4456 12 0 0 chr3 12248345 12248838 -147350945 + MT2_Mm LTR ERVL 1 493 0 3 678 38668 14 16 0 chr3 12248838 12254112 -147345671 + MERVL-int LTR ERVL 1 5360 -125 3 678 390 167 46 35 chr3 12254112 12254199 -147345584 + ORR1A3-int LTR MaLR 553 640 -1323 3 678 302 0 0 0 chr3 12254199 12254237 -147345546 + MERVL-int LTR ERVL 5448 5485 0 3 678 4456 12 0 0 chr3 12254237 12254730 -147345053 + MT2_Mm LTR ERVL 1 493 0 3 678 4901 139 34 19 chr3 12254732 12256118 -147343665 - Lx3B LINE L1 -593 6380 4978 3 678 2451 153 28 31 chr3 12256116 12256656 -147343127 + L1_Mur1 LINE L1 2773 3310 -2576 3 678 34 55 0 0 chr3 12256685 12256740 -147343043 + AT_rich Low_complexity Low_complexity 1 55 0 3 678 219 36 0 0 chr3 12256799 12256827 -147342956 + (TAAAA)n Simple_repeat Simple_repeat 3 30 0 3 678 396 310 33 52 chr3 12257138 12257291 -147342492 - RSINE1 SINE B4 -14 151 2 3 678 23 0 0 0 chr3 12258305 12258328 -147341455 + AT_rich Low_complexity Low_complexity 1 23 0 3 678 236 30 0 29 chr3 12258422 12258456 -147341327 + (CAAAAA)n Simple_repeat Simple_repeat 2 34 0 3 678 21 36 0 0 chr3 12258514 12258542 -147341241 + AT_rich Low_complexity Low_complexity 1 28 0 3 678 249 269 0 0 chr3 12259076 12259128 -147340655 + B4 SINE B4 31 82 -210 3 678 16239 33 0 3 chr3 12259128 12261180 -147338603 + L1Md_F2 LINE L1 3541 5586 -297 3 678 7924 55 1 7 chr3 12261180 12262181 -147337602 + L1Md_F2 LINE L1 5587 6581 -1 3 678 247 318 16 0 chr3 12262181 12262244 -147337539 + RSINE1 SINE B4 83 146 -19 3 678 548 250 127 24 chr3 12264026 12264239 -147335544 - L1Md_F LINE L1 -5826 693 459 3 678 607 304 50 11 chr3 12264541 12264824 -147334959 + L1MD3 LINE L1 7423 7716 -279 3 678 6711 177 52 15 chr3 12265100 12265995 -147333788 + Lx2B LINE L1 5224 6152 -848 3 678 366 23 0 0 chr3 12265995 12266038 -147333745 + (TG)n Simple_repeat Simple_repeat 1 43 0 3 678 6711 163 60 15 chr3 12266038 12266842 -147332941 + Lx2B LINE L1 6153 6999 -1 3 678 26449 145 9 44 chr3 12267735 12269673 -147330110 + L1_Mus3 LINE L1 662 2559 -3324 3 678 402 0 52 0 chr3 12269673 12269731 -147330052 + (CAA)n Simple_repeat Simple_repeat 2 62 0 3 678 26449 135 11 13 chr3 12269731 12271825 -147327958 + L1_Mus3 LINE L1 2560 4654 -1229 3 678 5327 90 17 0 chr3 12271825 12272544 -147327239 + L1_Mus1 LINE L1 5837 6567 0 3 678 26449 135 11 13 chr3 12272544 12272928 -147326855 + L1_Mus3 LINE L1 4655 5022 -861 3 678 4735 8 0 0 chr3 12272928 12273451 -147326332 + L1Md_T LINE L1 6060 6582 0 3 678 26449 126 16 5 chr3 12273451 12275067 -147324716 + L1_Mus3 LINE L1 5023 6638 0 3 678 6490 130 24 46 chr3 12275198 12276334 -147323449 + L1_Mus2 LINE L1 1673 2791 -3092 3 678 3553 36 0 0 chr3 12276334 12276755 -147323028 - L1Md_T LINE L1 0 6582 6162 3 678 6683 113 19 4 chr3 12276755 12278403 -147321380 + L1_Mus2 LINE L1 5588 6565 -1 3 678 13733 187 59 81 chr3 12278398 12278711 -147321072 + Lx LINE L1 2341 2635 -3251 3 678 441 0 0 0 chr3 12278711 12278760 -147321023 + (TTTTA)n Simple_repeat Simple_repeat 2 50 0 3 678 294 29 0 0 chr3 12278772 12278807 -147320976 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 3 678 1028 96 7 7 chr3 12278807 12278945 -147320838 - B1_Mm SINE Alu -8 139 1 3 678 13733 187 59 81 chr3 12278945 12279193 -147320590 + Lx LINE L1 2636 2874 -3012 3 678 363 44 0 0 chr3 12279193 12279238 -147320545 + (GA)n Simple_repeat Simple_repeat 2 46 0 3 678 13733 187 59 81 chr3 12279238 12279938 -147319845 + Lx LINE L1 2875 3571 -2315 3 678 1061 102 0 0 chr3 12279938 12280085 -147319698 + B1_Mus1 SINE Alu 2 148 0 3 678 13733 171 54 59 chr3 12280085 12281522 -147318261 + Lx LINE L1 3572 5048 -1606 3 678 847 46 0 0 chr3 12281522 12281630 -147318153 - B1_Mm SINE Alu 0 147 40 3 678 13733 171 54 59 chr3 12281630 12283190 -147316593 + Lx LINE L1 5049 6654 0 3 678 26 88 0 0 chr3 12283248 12283316 -147316467 + AT_rich Low_complexity Low_complexity 1 68 0 3 678 43 85 0 0 chr3 12283365 12283471 -147316312 + AT_rich Low_complexity Low_complexity 1 106 0 3 678 180 77 0 0 chr3 12283916 12283942 -147315841 + (TTG)n Simple_repeat Simple_repeat 2 27 0 3 678 1085 85 0 0 chr3 12283942 12284083 -147315700 - B1_Mus1 SINE Alu -7 141 1 3 678 513 32 0 0 chr3 12284510 12284573 -147315210 + (CAAAA)n Simple_repeat Simple_repeat 5 67 0 3 678 457 302 12 17 chr3 12284963 12285135 -147314648 - L1_Rod LINE L1 -140 5707 5537 3 678 932 266 104 13 chr3 12285154 12285336 -147314447 - Lx9 LINE L1 -2 7642 7439 3 678 270 0 0 0 chr3 12285336 12285366 -147314417 + (TG)n Simple_repeat Simple_repeat 2 31 0 3 678 932 266 104 13 chr3 12285366 12285557 -147314226 - Lx9 LINE L1 -206 7438 7237 3 678 250 280 0 13 chr3 12285573 12285649 -147314134 - L1_Rod LINE L1 -463 5384 5310 3 678 262 315 32 16 chr3 12286504 12286649 -147313134 + L1MB1 LINE L1 5825 5971 -212 3 678 726 349 41 67 chr3 12286698 12287014 -147312769 + RMER1A Other Other 49 356 -674 3 678 508 310 39 10 chr3 12287155 12287360 -147312423 + MURVY-int LTR ERV1 3437 3647 -3805 3 678 657 298 17 8 chr3 12287560 12287796 -147311987 + MuRRS4-int LTR ERV1 3806 4030 -1033 3 678 220 175 63 0 chr3 12288595 12288658 -147311125 + A-rich Low_complexity Low_complexity 2 68 0 3 678 3221 212 26 34 chr3 12288709 12289398 -147310385 + RMER1A Other Other 264 910 -120 3 678 375 23 0 0 chr3 12289398 12289442 -147310341 + (TG)n Simple_repeat Simple_repeat 2 45 0 3 678 3221 208 27 32 chr3 12289442 12289507 -147310276 + RMER1A Other Other 911 974 -56 3 678 4728 138 27 1 chr3 12289507 12290260 -147309523 + Lx2 LINE L1 6211 6982 -15 3 678 2726 34 6 0 chr3 12290264 12290592 -147309191 + L1Md_F3 LINE L1 6253 6582 -2 3 678 2577 236 35 60 chr3 12290631 12291496 -147308287 + L1_Mur3 LINE L1 4428 5270 -610 3 678 685 159 38 0 chr3 12292050 12292182 -147307601 + Lx2 LINE L1 6861 6997 0 3 678 2336 216 55 10 chr3 12292182 12292734 -147307049 + Lx6 LINE L1 5204 5831 -49 3 678 297 0 0 0 chr3 12292734 12292767 -147307016 + (CAA)n Simple_repeat Simple_repeat 1 33 0 3 678 2336 278 93 18 chr3 12292767 12293348 -147306435 + Lx6 LINE L1 5832 6459 -1001 3 678 1082 253 18 62 chr3 12293348 12293685 -147306098 - RMER19C LTR ERVK 0 611 290 3 678 515 98 11 0 chr3 12293693 12293785 -147305998 + (TCTA)n Simple_repeat Simple_repeat 4 96 0 3 678 233 287 14 34 chr3 12293926 12294074 -147305709 - Lx2B LINE L1 -1 6999 6855 3 678 10252 221 65 19 chr3 12294150 12296618 -147303165 + MERVL_2A-int LTR ERVL 56 2637 -3124 3 678 1080 263 11 41 chr3 12296643 12296909 -147302874 - ORR1B2 LTR MaLR -58 309 52 3 678 354 45 14 56 chr3 12297139 12297210 -147302573 + (TTTTG)n Simple_repeat Simple_repeat 3 70 0 3 678 592 242 0 0 chr3 12297364 12297492 -147302291 + L1VL2 LINE L1 260 387 -5948 3 678 2258 103 112 12 chr3 12297499 12297900 -147301883 + RLTR47_MM LTR ERV1 40 480 -52 3 678 1412 202 105 5 chr3 12297933 12298322 -147301461 + L1VL2 LINE L1 1 399 -5936 3 678 18033 152 22 21 chr3 12298314 12301685 -147298098 + Lx LINE L1 1742 5113 -770 3 678 2398 99 41 22 chr3 12301682 12301721 -147298062 - Lx3_Mus LINE L1 -1053 5956 5904 3 678 932 99 0 7 chr3 12301721 12301864 -147297919 + (TTTC)n Simple_repeat Simple_repeat 3 144 0 3 678 5511 105 40 11 chr3 12301864 12302766 -147297017 - Lx3_Mus LINE L1 -1106 5903 4870 3 678 5941 146 26 3 chr3 12302766 12303776 -147296007 + Lx3_Mus LINE L1 5977 7009 0 3 678 6294 141 38 13 chr3 12303790 12305311 -147294472 + Lx LINE L1 5101 6648 -6 3 678 1408 249 18 83 chr3 12305317 12305907 -147293876 - RLTR12B LTR ERVK -15 513 1 3 678 6100 227 36 43 chr3 12305907 12306573 -147293210 + MERVL_2A-int LTR ERVL 2892 3575 -2186 3 678 414 0 0 0 chr3 12306573 12306619 -147293164 + (CA)n Simple_repeat Simple_repeat 2 47 0 3 678 6100 227 36 43 chr3 12306619 12307446 -147292337 + MERVL_2A-int LTR ERVL 3576 4375 -1386 3 678 1986 259 5 0 chr3 12307439 12307860 -147291923 - MERVL_2A-int LTR ERVL -920 4841 4419 3 678 2031 201 11 5 chr3 12307878 12308258 -147291525 + MERVL_2A-int LTR ERVL 4979 5360 -401 3 678 712 250 17 44 chr3 12308249 12308429 -147291354 - MERVL_2A-int LTR ERVL -988 4773 4599 3 678 376 254 165 39 chr3 12308429 12308556 -147291227 + RLTR9A LTR ERVK 1 143 -225 3 678 230 261 42 28 chr3 12308551 12308622 -147291161 + RLTR9A LTR ERVK 297 368 0 3 678 1378 170 46 28 chr3 12308642 12308954 -147290829 + MERVL_2A-int LTR ERVL 5186 5664 -97 3 678 259 247 11 33 chr3 12308967 12309059 -147290724 + (TATATG)n Simple_repeat Simple_repeat 3 92 0 3 678 268 234 21 0 chr3 12309093 12309187 -147290596 + (TA)n Simple_repeat Simple_repeat 2 97 0 3 678 279 0 0 0 chr3 12309187 12309218 -147290565 + (GA)n Simple_repeat Simple_repeat 2 32 0 3 678 25 31 0 0 chr3 12309415 12309447 -147290336 + AT_rich Low_complexity Low_complexity 1 32 0 3 678 210 385 13 13 chr3 12310213 12310292 -147289491 + PB1D10 SINE Alu 25 103 -14 3 678 22 0 0 0 chr3 12310350 12310372 -147289411 + AT_rich Low_complexity Low_complexity 1 22 0 3 678 516 32 0 0 chr3 12310465 12310527 -147289256 + (TC)n Simple_repeat Simple_repeat 2 63 0 3 678 2548 233 93 21 chr3 12310545 12311376 -147288407 - Lx4B LINE L1 -45 6955 6076 3 678 1254 155 33 4 chr3 12311378 12311618 -147288165 + Lx3B LINE L1 3533 3779 -2098 3 678 8896 158 25 11 chr3 12311621 12313250 -147286533 + Lx3B LINE L1 4136 5787 -99 3 678 5025 70 3 3 chr3 12313250 12313906 -147285877 + L1Md_F2 LINE L1 4931 5586 -297 3 678 7727 61 10 0 chr3 12313907 12314892 -147284891 + L1Md_F2 LINE L1 5588 6582 0 3 678 1008 152 60 0 chr3 12314896 12315080 -147284703 + Lx3B LINE L1 5789 5983 -990 3 678 2607 207 95 11 chr3 12315067 12315775 -147284008 - L1_Mur1 LINE L1 -2532 3345 2579 3 678 1804 230 95 14 chr3 12315781 12316267 -147283516 - RLTR20D LTR ERVK -25 516 1 3 678 5288 230 27 4 chr3 12316269 12317936 -147281847 - L1_Mur1 LINE L1 -3294 2583 876 3 678 577 231 54 129 chr3 12318706 12318930 -147280853 + B3 SINE B2 5 211 -5 3 678 1257 106 0 76 chr3 12319072 12319296 -147280487 - L1Md_F2 LINE L1 -12 6570 6364 3 678 1927 180 152 2 chr3 12319745 12320206 -147279577 - RMER6D LTR ERVK -11 709 180 3 678 503 189 0 8 chr3 12320534 12320662 -147279121 + (TA)n Simple_repeat Simple_repeat 1 127 0 3 679 485 44 0 14 chr3 12321481 12321550 -147278233 + (TA)n Simple_repeat Simple_repeat 1 68 0 3 679 1052 95 0 33 chr3 12321569 12321721 -147278062 - B1_Mm SINE Alu 0 147 1 3 679 3180 98 4 4 chr3 12321725 12322184 -147277599 - L1_Mus1 LINE L1 0 6567 6109 4 679 729 34 0 0 chr3 12322741 12322829 -147276954 + (TTTTC)n Simple_repeat Simple_repeat 2 89 0 4 679 21 57 0 0 chr3 12323519 12323554 -147276229 + AT_rich Low_complexity Low_complexity 1 35 0 4 679 563 208 12 102 chr3 12323856 12324022 -147275761 + RLTR9A LTR ERVK 1 151 -217 4 679 922 152 0 6 chr3 12324097 12324256 -147275527 + B2_Mm2 SINE B2 35 192 -3 4 679 308 284 68 10 chr3 12324258 12324361 -147275422 + RLTR9A LTR ERVK 283 391 -18 4 679 342 61 0 0 chr3 12324656 12324705 -147275078 + (GA)n Simple_repeat Simple_repeat 1 49 0 4 679 749 168 95 0 chr3 12324802 12324939 -147274844 + RMER16-int LTR ERVK 255 404 -5002 4 679 4718 164 82 34 chr3 12324950 12325980 -147273803 + RMER16-int LTR ERVK 458 1537 -3869 4 679 190 329 13 40 chr3 12326000 12326076 -147273707 - L2b LINE L2 -69 3306 3233 4 679 3317 188 49 57 chr3 12326172 12327333 -147272450 + RMER16-int LTR ERVK 1500 3239 -4167 4 679 3507 137 68 32 chr3 12327334 12327982 -147271801 + RMER16-int LTR ERVK 2389 3059 -2347 4 679 1892 148 0 13 chr3 12327996 12328311 -147271472 + ETnERV2-int LTR ERVK 5359 5669 -1737 4 679 560 249 146 80 chr3 12328496 12328832 -147270951 + RLTR9A LTR ERVK 1 358 -10 4 679 335 83 17 0 chr3 12328896 12328956 -147270827 + (CA)n Simple_repeat Simple_repeat 2 62 0 4 679 4436 14 0 0 chr3 12328957 12329450 -147270333 + MT2_Mm LTR ERVL 1 493 0 4 679 246 148 0 0 chr3 12329450 12329504 -147270279 + (CAGA)n Simple_repeat Simple_repeat 3 56 0 4 679 351 359 31 31 chr3 12329852 12330013 -147269770 - RSINE1 SINE B4 -2 163 3 4 679 302 299 0 18 chr3 12330264 12330373 -147269410 + L1_Mur3 LINE L1 547 653 -7059 4 679 271 308 11 0 chr3 12330385 12330476 -147269307 + L1_Mur3 LINE L1 81 172 -7556 4 679 1050 325 120 24 chr3 12330495 12331034 -147268749 + L1_Mur3 LINE L1 24 679 -7049 4 679 2654 144 5 23 chr3 12331034 12331475 -147268308 + RLTR10C LTR ERVK 1 433 -3 4 679 1050 327 71 28 chr3 12331475 12331674 -147268109 + L1_Mur3 LINE L1 472 669 -7059 4 679 4337 223 22 57 chr3 12331674 12333080 -147266703 + L1_Mur3 LINE L1 2345 3812 -2065 4 679 3653 227 62 21 chr3 12333070 12334134 -147265649 + L1_Mur3 LINE L1 4280 5387 -493 4 679 1732 258 35 35 chr3 12334130 12334613 -147265170 + Lx6 LINE L1 6799 7281 -179 4 679 35 41 0 0 chr3 12334863 12334912 -147264871 + AT_rich Low_complexity Low_complexity 1 49 0 4 679 38439 54 5 9 chr3 12335355 12341841 -147257942 - L1Md_T LINE L1 0 6582 116 4 679 1293 250 19 31 chr3 12342236 12342554 -147257229 + ORR1C2 LTR MaLR 16 329 -55 4 679 180 0 0 0 chr3 12342922 12342942 -147256841 + (CAA)n Simple_repeat Simple_repeat 2 21 0 4 679 360 248 0 0 chr3 12343210 12343327 -147256456 + (CA)n Simple_repeat Simple_repeat 2 118 0 4 679 308 383 30 30 chr3 12343527 12343729 -147256054 - Lx8 LINE L1 -213 7260 7059 4 679 731 211 5 22 chr3 12344090 12344274 -147255509 - Lx LINE L1 0 6654 6474 4 679 591 161 137 8 chr3 12344284 12344415 -147255368 - Lx LINE L1 -311 6343 6196 4 679 601 133 0 82 chr3 12344427 12344623 -147255160 + (TA)n Simple_repeat Simple_repeat 1 180 0 4 679 2876 297 69 29 chr3 12345772 12345819 -147253964 - Lx7 LINE L1 -348 7348 7300 4 679 232 48 23 23 chr3 12345819 12345862 -147253921 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 4 679 2876 297 69 29 chr3 12345862 12345917 -147253866 - Lx7 LINE L1 -397 7299 7248 4 679 2636 84 3 11 chr3 12345917 12346288 -147253495 - L1_Mus1 LINE L1 0 6567 6200 4 679 2876 297 69 29 chr3 12346288 12347378 -147252405 - Lx7 LINE L1 -449 7247 6109 4 679 446 245 106 19 chr3 12347385 12347626 -147252157 - Lx7 LINE L1 -1453 6007 5740 4 679 2075 219 19 19 chr3 12347616 12348183 -147251600 + L1_Mur3 LINE L1 2575 3141 -2739 4 679 2517 201 24 10 chr3 12348197 12348780 -147251003 + L1_Mur3 LINE L1 3695 4285 -1595 4 679 1608 212 34 50 chr3 12348783 12349285 -147250498 + L1_Mur3 LINE L1 4136 4629 -1251 4 679 204 179 0 25 chr3 12349836 12349876 -147249907 + (TA)n Simple_repeat Simple_repeat 2 40 0 4 679 602 305 41 55 chr3 12349910 12350254 -147249529 - RLTR15 LTR ERVK -20 339 1 4 679 5866 87 17 8 chr3 12350922 12351744 -147248039 - L1_Mus1 LINE L1 0 6567 5739 4 679 2563 57 51 14 chr3 12351745 12352101 -147247682 - L1Md_F2 LINE L1 0 6582 6214 4 679 28097 143 21 48 chr3 12352101 12357736 -147242047 - L1Md_F2 LINE L1 -149 5734 261 4 679 351 0 0 0 chr3 12358295 12358334 -147241449 + (TCTA)n Simple_repeat Simple_repeat 1 39 0 4 679 310 316 31 183 chr3 12358805 12359161 -147240622 + RMER5 LTR ERV1 48 349 -185 4 679 37792 31 0 0 chr3 12360501 12366904 -147232879 - L1Md_T LINE L1 0 6585 86 4 679 858 255 73 9 chr3 12366952 12367185 -147232598 - ORR1B2 LTR MaLR 0 367 120 4 679 1804 227 142 68 chr3 12367186 12367321 -147232462 + RLTR25B LTR ERVK 1 136 -892 4 679 387 0 0 0 chr3 12367321 12367364 -147232419 + (TG)n Simple_repeat Simple_repeat 2 44 0 4 679 1804 227 142 68 chr3 12367364 12367785 -147231998 + RLTR25B LTR ERVK 137 597 -431 4 679 527 216 28 63 chr3 12367899 12368042 -147231741 + RLTR25B LTR ERVK 890 1027 -1 4 679 434 198 34 0 chr3 12368048 12368152 -147231631 - ORR1B2 LTR MaLR -249 97 1 4 679 471 229 45 18 chr3 12368152 12368263 -147231520 - ORR1C2 LTR MaLR -37 347 234 4 679 2072 112 20 53 chr3 12368264 12368621 -147231162 - RMER17A LTR ERVK -3 748 404 4 679 576 0 0 0 chr3 12368627 12368691 -147231092 + (GA)n Simple_repeat Simple_repeat 1 64 0 4 679 920 147 13 0 chr3 12368731 12368881 -147230902 - ORR1C2 LTR MaLR -232 152 1 4 679 942 272 84 17 chr3 12368881 12369180 -147230603 - ORR1C2-int LTR MaLR 0 1509 1191 4 679 8019 32 0 3 chr3 12369180 12370112 -147229671 + RLTR13B3 LTR ERVK 1 929 0 4 679 1050 142 16 27 chr3 12370112 12370300 -147229483 + ETnERV3-int LTR ERVK 1 186 -5622 4 679 275 297 0 0 chr3 12370372 12370473 -147229310 + ETnERV3-int LTR ERVK 279 379 -6874 4 679 310 274 0 0 chr3 12370742 12370815 -147228968 + ETnERV3-int LTR ERVK 1156 1228 -6025 4 679 16392 123 35 27 chr3 12370985 12373891 -147225892 + ETnERV3-int LTR ERVK 186 2895 -2913 4 679 22901 27 33 32 chr3 12373891 12374969 -147224814 - L1Md_T LINE L1 -570 6012 4899 4 679 230 283 31 61 chr3 12374969 12375067 -147224716 + RMER20A LTR ERVK 186 280 -236 4 679 22901 27 33 32 chr3 12375067 12376974 -147222809 - L1Md_T LINE L1 -570 4898 2927 4 679 7409 113 59 28 chr3 12376974 12377031 -147222752 + ETnERV3-int LTR ERVK 3920 3976 -1832 4 679 414 0 0 0 chr3 12377031 12377077 -147222706 + (TAAA)n Simple_repeat Simple_repeat 1 46 0 4 679 7409 121 105 21 chr3 12377077 12378740 -147221043 + ETnERV3-int LTR ERVK 3977 5780 -28 4 679 8029 32 0 3 chr3 12378752 12379684 -147220099 + RLTR13B3 LTR ERVK 1 929 0 4 679 2011 268 45 34 chr3 12379745 12380360 -147219423 - ORR1C2-int LTR MaLR -887 622 1 4 679 1655 268 14 8 chr3 12380362 12380731 -147219052 - ORR1C2 LTR MaLR -3 381 11 4 679 1056 285 101 0 chr3 12380769 12381197 -147218586 - Lx9 LINE L1 0 7644 7174 4 679 905 190 3 20 chr3 12381888 12382194 -147217589 + CT-rich Low_complexity Low_complexity 1 301 0 4 679 428 337 34 5 chr3 12382202 12382408 -147217375 - ID_B1 SINE B4 -9 215 4 4 679 254 351 81 43 chr3 12382575 12382736 -147217047 - B3 SINE B2 0 216 50 4 679 210 37 0 0 chr3 12382822 12382849 -147216934 + (CA)n Simple_repeat Simple_repeat 2 28 0 4 679 979 305 65 39 chr3 12382850 12383690 -147216093 - L1M2 LINE L1 -885 5258 4397 4 679 229 169 65 0 chr3 12383775 12383852 -147215931 + (TA)n Simple_repeat Simple_repeat 2 83 0 4 679 1643 26 0 0 chr3 12383985 12384175 -147215608 - B2_Mm1t SINE B2 -2 191 2 4 679 396 260 70 18 chr3 12384928 12385105 -147214678 - L1_Mur3 LINE L1 -2165 3981 3811 4 679 24 53 0 0 chr3 12385164 12385202 -147214581 + AT_rich Low_complexity Low_complexity 1 38 0 4 679 312 287 66 20 chr3 12385221 12385532 -147214251 - L1_Mur3 LINE L1 -297 3617 3283 4 679 447 19 0 0 chr3 12385626 12385678 -147214105 + (TAGA)n Simple_repeat Simple_repeat 3 54 0 4 679 227 338 35 77 chr3 12385707 12385877 -147213906 + RMER4B LTR ERVK 25 187 -398 4 679 1875 207 39 5 chr3 12385903 12386404 -147213379 - RLTR25A LTR ERVK 0 1028 447 4 679 237 309 52 43 chr3 12386405 12386520 -147213263 - RLTR23 LTR ERV1 -1 429 314 4 679 1012 265 84 45 chr3 12386507 12386934 -147212849 + RLTR22_Mur LTR ERVK 366 809 -1039 4 679 413 276 17 8 chr3 12386997 12387114 -147212669 + RLTR22_Mur LTR ERVK 1590 1707 -141 4 679 2105 218 10 79 chr3 12387176 12387695 -147212088 - RLTR25A LTR ERVK -620 483 1 4 679 1089 301 11 0 chr3 12387779 12388065 -147211718 - MTC LTR MaLR -25 396 108 4 679 460 111 12 12 chr3 12388065 12388147 -147211636 + (TTTC)n Simple_repeat Simple_repeat 2 83 0 4 679 390 253 0 0 chr3 12388149 12388232 -147211551 - MTC LTR MaLR -338 83 1 4 679 12734 134 22 6 chr3 12388324 12391366 -147208417 + L1VL1 LINE L1 221 3310 -388 4 679 2759 232 12 3 chr3 12391356 12391945 -147207838 - L1VL1 LINE L1 -5827 595 2 4 679 204 40 0 0 chr3 12392503 12392528 -147207255 + (CAAA)n Simple_repeat Simple_repeat 4 28 0 4 679 1246 73 6 6 chr3 12392642 12392822 -147206961 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 4 679 339 78 0 0 chr3 12392827 12392878 -147206905 + (TCTG)n Simple_repeat Simple_repeat 2 52 0 4 679 496 77 13 13 chr3 12392992 12393071 -147206712 + (CATA)n Simple_repeat Simple_repeat 4 82 0 4 679 271 351 40 7 chr3 12393092 12393244 -147206539 - L1M2 LINE L1 -1202 4941 4785 4 679 299 312 21 31 chr3 12394545 12394641 -147205142 - B1_Mm SINE Alu -9 138 44 4 679 198 0 0 0 chr3 12394832 12394854 -147204929 + (TA)n Simple_repeat Simple_repeat 2 23 0 4 679 217 316 40 0 chr3 12395092 12395168 -147204615 + ID2 SINE ID 4 82 -1 4 679 279 0 0 0 chr3 12395684 12395715 -147204068 + (CA)n Simple_repeat Simple_repeat 2 32 0 4 679 903 19 0 0 chr3 12395715 12395819 -147203964 + (GA)n Simple_repeat Simple_repeat 2 106 0 4 679 207 100 0 0 chr3 12395839 12395869 -147203914 + (TAGA)n Simple_repeat Simple_repeat 3 32 0 4 679 365 325 89 0 chr3 12396739 12396862 -147202921 + RSINE1 SINE B4 2 135 -30 4 679 204 200 0 0 chr3 12396904 12396959 -147202824 + (CA)n Simple_repeat Simple_repeat 2 56 0 4 679 419 148 11 0 chr3 12399263 12399351 -147200432 + (TG)n Simple_repeat Simple_repeat 2 90 0 4 679 789 157 12 29 chr3 12400260 12400431 -147199352 - URR1B DNA MER1_type 0 225 54 4 679 9395 115 15 14 chr3 12400431 12400557 -147199226 - L1_Mur1 LINE L1 -2243 3643 3518 4 679 302 0 26 0 chr3 12400557 12400595 -147199188 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 4 679 9395 115 15 14 chr3 12400595 12402026 -147197757 - L1_Mur1 LINE L1 -2369 3517 2083 4 679 5042 143 104 6 chr3 12402019 12403283 -147196500 - L1_Mur1 LINE L1 -4268 1618 210 4 679 22 94 0 0 chr3 12403659 12403723 -147196060 + AT_rich Low_complexity Low_complexity 1 64 0 4 679 396 178 0 14 chr3 12404042 12404116 -147195667 + L1_Rod LINE L1 2176 2248 -3599 4 679 343 255 31 20 chr3 12404140 12404286 -147195497 - Lx6 LINE L1 0 7696 7568 4 679 256 24 49 0 chr3 12404293 12404334 -147195449 + (TTTTTG)n Simple_repeat Simple_repeat 2 44 0 4 679 1018 103 0 40 chr3 12404338 12404490 -147195293 - B1_Mm SINE Alu 0 147 2 4 679 2358 283 69 32 chr3 12404490 12405300 -147194483 - Lx6 LINE L1 -139 7321 6482 4 679 10102 100 11 1 chr3 12405295 12407485 -147192298 + L1_Mus1 LINE L1 4353 6566 -1 4 679 3294 242 51 25 chr3 12407543 12408941 -147190842 - Lx6 LINE L1 -1009 6451 5024 4 679 3151 66 75 0 chr3 12408941 12409383 -147190400 - IAPLTR2_Mm LTR ERVK 0 475 1 4 679 3294 222 54 22 chr3 12409383 12409400 -147190383 - Lx6 LINE L1 -857 5023 5008 4 679 14406 58 7 3 chr3 12409400 12411201 -147188582 - IAPEz-int LTR ERVK -17 6464 4656 4 679 1859 99 8 0 chr3 12411200 12411452 -147188331 - IAPEz-int LTR ERVK -5183 2497 2244 4 679 939 59 0 0 chr3 12411447 12411566 -147188217 - IAPEz-int LTR ERVK -5004 1477 1359 4 679 3812 61 4 18 chr3 12411566 12412068 -147187715 - IAPEz-int LTR ERVK -5819 662 168 4 679 228 327 0 0 chr3 12412068 12412123 -147187660 - RLTR27 LTR ERVK -34 275 221 4 679 1089 83 25 100 chr3 12412123 12412323 -147187460 - IAPEz-int LTR ERVK -6288 193 9 4 679 3058 70 73 18 chr3 12412324 12412774 -147187009 - IAPLTR2_Mm LTR ERVK 0 475 1 4 679 310 180 0 0 chr3 12412774 12412835 -147186948 - Lx6 LINE L1 -856 5024 4964 4 679 8329 211 105 64 chr3 12412832 12415394 -147184389 - Lx6 LINE L1 -1691 4189 1544 4 679 477 0 0 0 chr3 12415394 12415447 -147184336 + (TTC)n Simple_repeat Simple_repeat 3 55 0 4 679 8329 226 105 50 chr3 12415447 12415836 -147183947 - Lx6 LINE L1 -4337 1543 1115 4 679 243 0 0 0 chr3 12415836 12415863 -147183920 + (TTTTG)n Simple_repeat Simple_repeat 5 31 0 4 679 3231 266 106 14 chr3 12415863 12416751 -147183032 - Lx6 LINE L1 -6614 1114 129 4 679 28518 92 26 18 chr3 12417148 12418934 -147180849 + L1_Mus3 LINE L1 250 2070 -3813 4 679 261 0 0 0 chr3 12418934 12418963 -147180820 + (CAA)n Simple_repeat Simple_repeat 2 30 0 4 679 28518 115 28 39 chr3 12418963 12423574 -147176209 + L1_Mus3 LINE L1 2071 6633 -5 4 679 26 30 0 0 chr3 12423813 12423846 -147175937 + AT_rich Low_complexity Low_complexity 1 33 0 4 679 38595 33 2 9 chr3 12424194 12430256 -147169527 - L1Md_T LINE L1 -3 6579 569 4 679 254 234 31 0 chr3 12431029 12431157 -147168626 + (TG)n Simple_repeat Simple_repeat 2 133 0 5 679 208 143 36 0 chr3 12431227 12431283 -147168500 + (TG)n Simple_repeat Simple_repeat 1 58 0 5 679 224 301 0 24 chr3 12431294 12431379 -147168404 + (TATATG)n Simple_repeat Simple_repeat 6 88 0 5 679 215 175 18 0 chr3 12431384 12431441 -147168342 + (TG)n Simple_repeat Simple_repeat 2 59 0 5 679 249 335 81 15 chr3 12433101 12433374 -147166409 + MER20B DNA MER1_type 447 737 -46 5 679 1105 83 0 0 chr3 12433377 12433521 -147166262 + B1_Mm SINE Alu 1 144 -3 5 679 297 0 0 0 chr3 12433521 12433554 -147166229 + (CAAAA)n Simple_repeat Simple_repeat 2 34 0 5 679 22 35 0 0 chr3 12434773 12434802 -147164981 + AT_rich Low_complexity Low_complexity 1 29 0 5 679 658 245 21 0 chr3 12434814 12434957 -147164826 + B1_Mus2 SINE Alu 1 146 -1 5 679 501 17 0 0 chr3 12434969 12435027 -147164756 + (GGAA)n Simple_repeat Simple_repeat 3 60 0 5 679 2646 205 49 25 chr3 12435078 12435668 -147164115 + L1_Mur2 LINE L1 534 1137 -5949 5 679 2498 86 41 15 chr3 12435703 12436093 -147163690 - RLTR44B LTR ERVK -49 400 1 5 679 1714 153 159 1 chr3 12436095 12436582 -147163201 + L1_Mur2 LINE L1 1147 1771 -4106 5 679 981 124 156 0 chr3 12436578 12436764 -147163019 - L1_Mus3 LINE L1 0 6638 6424 5 679 3730 142 9 10 chr3 12436772 12437453 -147162330 - L1VL1 LINE L1 -1286 2412 1733 5 679 4747 108 33 50 chr3 12437966 12439437 -147160346 - L1VL1 LINE L1 -1913 1785 362 5 679 450 0 0 0 chr3 12439437 12439487 -147160296 + (TC)n Simple_repeat Simple_repeat 1 50 0 5 679 249 83 0 0 chr3 12439487 12439522 -147160261 + (CA)n Simple_repeat Simple_repeat 1 36 0 5 679 673 193 14 130 chr3 12439533 12439741 -147160042 + L1_Mur2 LINE L1 2041 2224 -3653 5 679 901 130 13 40 chr3 12439798 12439950 -147159833 + B1_Mus1 SINE Alu 1 148 0 5 679 388 78 76 19 chr3 12439957 12440062 -147159721 + A-rich Low_complexity Low_complexity 2 112 0 5 679 2207 184 119 69 chr3 12440069 12440605 -147159178 - RMER19C LTR ERVK -48 563 1 5 679 1258 145 45 16 chr3 12440605 12440851 -147158932 + L1_Mur2 LINE L1 2222 2474 -3403 5 679 5900 158 37 24 chr3 12440847 12442050 -147157733 + L1_Mur2 LINE L1 4329 5547 -330 5 679 1942 144 41 49 chr3 12442054 12442404 -147157379 + MT2B LTR ERVL 1 337 -264 5 679 4566 146 28 13 chr3 12442404 12443197 -147156586 + RLTR22_Mur LTR ERVK 1 805 -1043 5 679 331 354 58 63 chr3 12443391 12443614 -147156169 + RMER12 LTR ERVK 1101 1322 0 5 679 1587 139 4 0 chr3 12443614 12443871 -147155912 + MT2B LTR ERVL 344 601 0 5 679 4725 201 72 15 chr3 12443899 12444928 -147154855 + Lx4B LINE L1 5587 6674 -384 5 679 415 286 31 31 chr3 12444958 12445117 -147154666 + L1Md_F LINE L1 570 728 -5791 5 679 262 129 45 61 chr3 12445163 12445229 -147154554 + L1Md_F LINE L1 570 634 -5885 5 679 13744 136 19 12 chr3 12445239 12448029 -147151754 + L1VL4 LINE L1 468 3278 -281 5 679 545 261 7 0 chr3 12448029 12448171 -147151612 + L1M2 LINE L1 3655 3797 -2346 5 679 3221 82 0 0 chr3 12448173 12448602 -147151181 + L1Md_F2 LINE L1 5157 5585 -298 5 679 7855 54 1 2 chr3 12448603 12449586 -147150197 + L1Md_F2 LINE L1 5587 6568 -14 5 679 283 267 51 44 chr3 12449693 12449830 -147149953 + L1M2 LINE L1 5366 5503 -797 5 679 278 292 87 0 chr3 12449913 12450074 -147149709 + L1M2 LINE L1 5629 5803 -497 5 679 270 0 0 0 chr3 12450262 12450292 -147149491 + (TA)n Simple_repeat Simple_repeat 2 31 0 5 679 22 56 0 0 chr3 12451195 12451231 -147148552 + AT_rich Low_complexity Low_complexity 1 36 0 5 679 1174 62 6 0 chr3 12451341 12451503 -147148280 + L1Md_F2 LINE L1 6419 6581 -1 5 679 30 59 0 0 chr3 12451504 12451555 -147148228 + AT_rich Low_complexity Low_complexity 1 51 0 5 680 21 0 0 0 chr3 12452148 12452169 -147147614 + AT_rich Low_complexity Low_complexity 1 21 0 5 680 697 315 42 7 chr3 12452320 12452630 -147147153 + Lx7 LINE L1 5607 5927 -1769 5 680 987 230 56 0 chr3 12452643 12452839 -147146944 - Lx6 LINE L1 -735 6725 6519 5 680 254 50 25 0 chr3 12452840 12452880 -147146903 + (TTTG)n Simple_repeat Simple_repeat 1 41 0 5 680 221 212 0 29 chr3 12452882 12452950 -147146833 + T-rich Low_complexity Low_complexity 2 67 0 5 680 777 315 22 34 chr3 12452950 12453305 -147146478 - Lx7 LINE L1 -1180 6516 6166 5 680 5689 273 76 18 chr3 12453311 12455719 -147144064 - Lx5 LINE L1 -1274 5776 3219 5 680 773 280 62 82 chr3 12455743 12456221 -147143562 - RMER2 LTR ERV1 -27 540 1 5 680 449 217 0 74 chr3 12456222 12456332 -147143451 - Lx5 LINE L1 -3712 2168 2067 5 680 258 106 0 0 chr3 12456332 12456379 -147143404 + (TGG)n Simple_repeat Simple_repeat 1 47 0 5 680 449 217 0 74 chr3 12456379 12456417 -147143366 - Lx5 LINE L1 -3814 2066 2031 5 680 5652 123 2 1 chr3 12456408 12457279 -147142504 + L1_Mus3 LINE L1 5546 6417 -221 5 680 1359 232 83 19 chr3 12457276 12457637 -147142146 - Lx5 LINE L1 -6731 997 614 5 680 3328 141 12 0 chr3 12457923 12458441 -147141342 + Lx3B LINE L1 6445 6968 -5 5 680 41 0 0 0 chr3 12458445 12458486 -147141297 + AT_rich Low_complexity Low_complexity 1 41 0 5 680 247 29 0 0 chr3 12458957 12458992 -147140791 + B1_Mur4 SINE Alu 1 35 -115 5 680 1507 200 78 83 chr3 12458992 12459465 -147140318 - RLTR1B LTR ERV1 0 512 1 5 680 849 94 0 0 chr3 12459465 12459582 -147140201 + B1_Mus1 SINE Alu 32 148 0 5 680 261 139 0 0 chr3 12459582 12459625 -147140158 + (A)n Simple_repeat Simple_repeat 1 43 0 5 680 45 45 0 0 chr3 12459758 12459824 -147139959 + AT_rich Low_complexity Low_complexity 1 66 0 5 680 470 280 131 18 chr3 12459971 12460193 -147139590 - RLTR9A LTR ERVK -8 360 114 5 680 569 202 16 0 chr3 12460211 12460340 -147139443 + Lx5 LINE L1 5600 5730 -1320 5 680 317 167 19 0 chr3 12460350 12460404 -147139379 - RLTR9A LTR ERVK -313 55 1 5 680 325 283 10 10 chr3 12460404 12460483 -147139300 + RMER4B LTR ERVK 98 176 -409 5 680 7132 211 20 14 chr3 12460772 12462270 -147137513 + Lx5 LINE L1 5570 7047 -3 5 680 249 33 0 0 chr3 12462278 12462308 -147137475 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 5 680 2259 39 11 0 chr3 12462362 12462644 -147137139 + L1Md_F2 LINE L1 6290 6574 -8 5 680 255 319 53 11 chr3 12463193 12463288 -147136495 - B3 SINE B2 -5 211 113 5 680 458 211 0 0 chr3 12463290 12463380 -147136403 - Lx9 LINE L1 -749 6895 6806 5 680 229 350 19 19 chr3 12463402 12463507 -147136276 - B2_Mm1t SINE B2 -88 105 1 5 680 1605 233 50 0 chr3 12463729 12464072 -147135711 + Lx6 LINE L1 6245 6604 -856 5 680 23 54 0 0 chr3 12464083 12464120 -147135663 + AT_rich Low_complexity Low_complexity 1 37 0 5 680 526 244 24 0 chr3 12464385 12464513 -147135270 - B1_Mus2 SINE Alu -9 140 1 5 680 25 31 0 0 chr3 12464726 12464758 -147135025 + AT_rich Low_complexity Low_complexity 1 32 0 5 680 679 260 56 11 chr3 12464910 12465089 -147134694 + Lx6 LINE L1 6929 7115 -345 5 680 4369 74 2 0 chr3 12465108 12465677 -147134106 + L1Md_F2 LINE L1 5017 5586 -297 5 680 7681 64 8 0 chr3 12465678 12466651 -147133132 + L1Md_F2 LINE L1 5588 6568 -14 5 680 333 0 0 0 chr3 12467637 12467674 -147132109 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 5 680 7501 38 9 1 chr3 12467795 12468700 -147131083 - L1Md_T LINE L1 0 6582 5671 5 680 36304 66 2 25 chr3 12468701 12474772 -147125011 + L1Md_T LINE L1 99 5586 -297 5 680 7998 57 0 0 chr3 12474772 12475768 -147124015 + L1Md_T LINE L1 5587 6582 0 5 680 35575 46 2 6 chr3 12475777 12481150 -147118633 - L1Md_Gf LINE L1 -198 5688 244 5 680 324 0 0 0 chr3 12481565 12481601 -147118182 + (CA)n Simple_repeat Simple_repeat 1 36 0 5 680 468 0 0 0 chr3 12481601 12481652 -147118131 + (TA)n Simple_repeat Simple_repeat 2 53 0 5 680 240 160 0 0 chr3 12481887 12481910 -147117873 + A-rich Low_complexity Low_complexity 1 23 0 5 680 1020 104 28 0 chr3 12481910 12482054 -147117729 + B1_Mus1 SINE Alu 1 148 0 5 680 240 160 0 0 chr3 12482054 12482080 -147117703 + A-rich Low_complexity Low_complexity 24 49 0 5 680 201 74 0 0 chr3 12482752 12482779 -147117004 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 5 680 22 70 0 0 chr3 12482980 12483023 -147116760 + AT_rich Low_complexity Low_complexity 1 43 0 5 680 545 365 51 39 chr3 12483236 12483572 -147116211 + Charlie2b DNA MER1_type 9 348 -2434 5 680 25 31 0 0 chr3 12483911 12483943 -147115840 + AT_rich Low_complexity Low_complexity 1 32 0 5 680 1128 295 50 41 chr3 12484333 12484919 -147114864 - Lx9 LINE L1 -1 7643 7053 5 680 3799 289 50 17 chr3 12485144 12486326 -147113457 - Lx5 LINE L1 -3 7047 5827 5 680 2050 155 50 0 chr3 12486331 12486672 -147113111 + Lx3C LINE L1 6446 6803 -173 5 680 1930 225 41 35 chr3 12486678 12487532 -147112251 - L1_Mur3 LINE L1 -4104 1773 909 5 680 255 133 0 0 chr3 12488433 12488478 -147111305 + (CATATA)n Simple_repeat Simple_repeat 5 49 0 5 680 519 309 58 40 chr3 12488528 12488754 -147111029 + ORR1D2-int LTR MaLR 536 765 -605 5 680 1756 147 81 12 chr3 12488755 12489099 -147110684 + RLTR9A LTR ERVK 1 368 0 5 680 3533 57 0 0 chr3 12489180 12489633 -147110150 - L1_Mm LINE L1 -1328 4555 4103 5 680 2182 137 74 104 chr3 12490187 12490726 -147109057 + RMER16-int LTR ERVK 2083 2605 -4639 5 680 5415 140 49 33 chr3 12490723 12491780 -147108003 + RMER16-int LTR ERVK 2839 4176 -1230 5 680 265 340 19 0 chr3 12491902 12492008 -147107775 + RMER16-int LTR ERVK 6306 6413 -993 5 680 282 206 27 27 chr3 12492202 12492277 -147107506 + RMER16-int LTR ERVK 7330 7404 -2 5 680 1902 126 29 68 chr3 12492278 12492661 -147107122 + RLTR9A LTR ERVK 1 368 0 5 680 678 337 16 42 chr3 12492661 12492968 -147106815 + ORR1D2-int LTR MaLR 761 1059 -311 5 680 748 179 0 28 chr3 12493009 12493153 -147106630 + URR1B DNA MER1_type 86 225 0 5 680 977 271 75 0 chr3 12493153 12493447 -147106336 + ORR1D2-int LTR MaLR 1055 1370 0 5 680 513 293 136 44 chr3 12493447 12493786 -147105997 + ORR1D2 LTR MaLR 1 370 0 5 680 598 312 54 29 chr3 12494439 12494716 -147105067 - B4A SINE B4 -4 288 5 5 680 27 0 0 0 chr3 12494993 12495020 -147104763 + AT_rich Low_complexity Low_complexity 1 27 0 5 680 299 263 117 69 chr3 12495025 12495213 -147104570 + LTR37A LTR ERV1 23 219 -207 5 680 818 94 0 0 chr3 12496862 12496979 -147102804 + B1_Mus2 SINE Alu 2 118 -29 5 680 24 0 0 0 chr3 12497890 12497914 -147101869 + AT_rich Low_complexity Low_complexity 1 24 0 5 680 423 38 0 0 chr3 12499007 12499060 -147100723 + (TG)n Simple_repeat Simple_repeat 2 54 0 5 680 392 341 29 52 chr3 12499676 12499948 -147099835 + MLT1F-int LTR MaLR 135 400 -1089 5 680 487 258 116 64 chr3 12500072 12500399 -147099384 - RLTR12B LTR ERVK -5 523 180 1 680 1370 50 6 0 chr3 12500412 12500591 -147099192 + (TTTCC)n Simple_repeat Simple_repeat 1 180 0 2 680 429 58 70 0 chr3 12500595 12500681 -147099102 + (TC)n Simple_repeat Simple_repeat 2 93 0 3 680 279 133 0 0 chr3 12500895 12500940 -147098843 + (TTCC)n Simple_repeat Simple_repeat 1 45 0 4 680 1125 89 0 27 chr3 12500940 12501124 -147098659 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 5 680 448 369 49 9 chr3 12501150 12501374 -147098409 + MLT1F-int LTR MaLR 690 922 -567 6 680 314 229 16 0 chr3 12502118 12502179 -147097604 + MLT1E2 LTR MaLR 311 372 -255 7 680 352 347 8 25 chr3 12502914 12503035 -147096748 + PB1D9 SINE Alu 2 120 0 8 680 669 25 0 0 chr3 12503526 12503605 -147096178 + (TC)n Simple_repeat Simple_repeat 2 80 0 9 680 273 89 0 0 chr3 12503605 12503649 -147096134 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 680 27 29 0 0 chr3 12504079 12504113 -147095670 + AT_rich Low_complexity Low_complexity 1 34 0 1 680 209 33 33 0 chr3 12504481 12504511 -147095272 + (TTTTTG)n Simple_repeat Simple_repeat 5 35 0 1 680 858 94 20 13 chr3 12505386 12505683 -147094100 - L1_Mus3 LINE L1 0 6638 6472 1 680 4739 47 2 46 chr3 12505819 12506447 -147093336 + L1Md_F2 LINE L1 5981 6580 -2 1 680 451 359 77 48 chr3 12506553 12506995 -147092788 + Lx8 LINE L1 7012 7466 -7 1 680 231 114 0 0 chr3 12507559 12507594 -147092189 + (T)n Simple_repeat Simple_repeat 1 35 0 1 680 1048 80 0 0 chr3 12508112 12508250 -147091533 + B1_Mus2 SINE Alu 3 140 -7 1 680 220 122 40 20 chr3 12508254 12508304 -147091479 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 1 680 1982 157 6 0 chr3 12508643 12508968 -147090815 - ORR1A2 LTR MaLR 0 327 1 1 680 625 279 68 30 chr3 12509231 12509337 -147090446 + L1M2 LINE L1 5381 5490 -810 2 680 378 0 0 0 chr3 12509337 12509379 -147090404 + (CAAAA)n Simple_repeat Simple_repeat 5 46 0 2 680 625 279 68 30 chr3 12509379 12509568 -147090215 + L1M2 LINE L1 5491 5687 -613 2 680 229 235 0 0 chr3 12509851 12509902 -147089881 - L1_Rod LINE L1 -3488 2359 2309 2 680 986 291 32 29 chr3 12509923 12510234 -147089549 - Lx6 LINE L1 0 7460 7149 2 680 3978 58 0 0 chr3 12510231 12510744 -147089039 - L1_Mm LINE L1 -1506 4377 3865 2 680 2148 94 32 46 chr3 12510744 12511091 -147088692 + L1Md_F2 LINE L1 6240 6581 -1 2 680 1071 251 78 41 chr3 12511102 12511422 -147088361 - Lx6 LINE L1 -303 7157 6826 2 680 231 222 22 22 chr3 12511445 12511537 -147088246 + T-rich Low_complexity Low_complexity 2 93 0 2 680 1149 113 0 0 chr3 12511603 12511780 -147088003 + (TTTC)n Simple_repeat Simple_repeat 1 177 0 2 680 350 167 64 46 chr3 12511788 12511919 -147087864 - B1_Mm SINE Alu 0 149 5 2 680 2828 279 50 40 chr3 12511920 12512215 -147087568 - Lx6 LINE L1 -884 6576 6299 2 680 306 0 0 0 chr3 12512215 12512249 -147087534 + (CA)n Simple_repeat Simple_repeat 2 35 0 2 680 5693 228 73 45 chr3 12512249 12514380 -147085403 - Lx6 LINE L1 -1162 6298 4088 2 680 878 174 20 15 chr3 12514365 12514563 -147085220 + L1_Mur3 LINE L1 3544 3742 -2138 3 680 36465 32 2 9 chr3 12514563 12519778 -147080005 + L1Md_T LINE L1 413 5586 -297 3 680 8109 49 0 0 chr3 12519778 12520774 -147079009 + L1Md_T LINE L1 5587 6582 0 3 680 2467 235 31 4 chr3 12520810 12521332 -147078451 + Lx5 LINE L1 6374 6909 -141 3 680 254 115 19 0 chr3 12521340 12521392 -147078391 + (CAAAA)n Simple_repeat Simple_repeat 3 55 0 3 680 1209 280 72 19 chr3 12522494 12522919 -147076864 + Lx5 LINE L1 6514 7025 -33 3 680 1274 73 0 6 chr3 12522938 12523118 -147076665 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 3 680 453 248 8 8 chr3 12523130 12523260 -147076523 + L1_Mur3 LINE L1 3926 4055 -1825 3 680 16822 133 17 4 chr3 12523266 12526764 -147073019 + L1_Mus3 LINE L1 3091 6636 -2 3 680 1052 298 78 27 chr3 12526844 12527292 -147072491 + Lx8 LINE L1 6663 7133 -340 3 680 373 299 60 77 chr3 12527304 12527539 -147072244 + Lx8 LINE L1 7241 7471 -2 3 680 243 389 0 0 chr3 12528082 12528154 -147071629 - RMER20B LTR ERVK -502 125 54 3 680 221 0 0 33 chr3 12528485 12528515 -147071268 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 3 680 923 107 6 123 chr3 12528525 12528695 -147071088 - B1_Mur4 SINE Alu 0 150 1 4 680 27 0 0 0 chr3 12529529 12529556 -147070227 + AT_rich Low_complexity Low_complexity 1 27 0 4 680 13211 108 12 14 chr3 12529562 12532412 -147067371 - L1VL2 LINE L1 -626 2989 145 4 680 197 108 27 0 chr3 12533220 12533257 -147066526 + (CAA)n Simple_repeat Simple_repeat 2 39 0 4 680 207 0 0 0 chr3 12533461 12533484 -147066299 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 4 680 254 242 97 21 chr3 12533762 12533855 -147065928 - RLTR20B2 LTR ERVK -86 491 366 4 680 27001 134 26 7 chr3 12533855 12539622 -147060161 - L1_Mus2 LINE L1 -21 6545 675 4 680 2026 219 33 21 chr3 12539707 12540127 -147059656 - RLTR20B2 LTR ERVK -133 427 3 4 680 35698 41 5 8 chr3 12540172 12545562 -147054221 + L1Md_T LINE L1 214 5586 -297 4 680 8379 38 0 0 chr3 12545562 12546556 -147053227 + L1Md_T LINE L1 5587 6580 -2 4 680 483 188 0 0 chr3 12546942 12547059 -147052724 + (TG)n Simple_repeat Simple_repeat 2 118 0 4 680 3308 156 12 7 chr3 12547368 12547383 -147052400 - Lx3A LINE L1 0 6981 6967 4 680 186 43 0 0 chr3 12547383 12547406 -147052377 + (TTTA)n Simple_repeat Simple_repeat 4 26 0 5 680 3308 156 12 7 chr3 12547406 12547953 -147051830 - Lx3A LINE L1 -15 6966 6417 4 680 273 75 0 0 chr3 12547981 12548034 -147051749 + Lx3_Mus LINE L1 5908 5960 -1049 5 680 243 333 137 0 chr3 12548037 12548139 -147051644 + B1_Mur2 SINE Alu 18 133 -16 5 680 335 178 0 22 chr3 12548158 12548250 -147051533 + GA-rich Low_complexity Low_complexity 3 92 0 5 680 1154 68 0 13 chr3 12549532 12549682 -147050101 + B1_Mus1 SINE Alu 1 148 0 5 680 271 297 33 11 chr3 12549768 12549860 -147049923 + PB1D10 SINE Alu 13 106 -11 5 680 22 0 0 0 chr3 12550800 12550822 -147048961 + AT_rich Low_complexity Low_complexity 1 22 0 5 680 2121 171 41 39 chr3 12550933 12551256 -147048527 + Lx2 LINE L1 6560 6866 -131 5 680 225 0 0 0 chr3 12551256 12551281 -147048502 + (TGGG)n Simple_repeat Simple_repeat 1 25 0 5 680 2121 171 41 39 chr3 12551281 12551371 -147048412 + Lx2 LINE L1 6867 6972 -25 5 680 194 0 39 0 chr3 12551371 12551397 -147048386 + (TAAAA)n Simple_repeat Simple_repeat 2 28 0 5 680 25 31 0 0 chr3 12551399 12551431 -147048352 + AT_rich Low_complexity Low_complexity 1 32 0 6 680 337 354 79 34 chr3 12552228 12552635 -147047148 + L1M5 LINE L1 3228 3652 -2494 6 680 16542 109 29 13 chr3 12553042 12554457 -147045326 - L1_Mus2 LINE L1 -6 6560 5138 6 680 1300 105 0 0 chr3 12554457 12554648 -147045135 + L1_Mus2 LINE L1 6364 6554 -12 6 680 16542 136 29 16 chr3 12554648 12556722 -147043061 - L1_Mus2 LINE L1 -746 5137 3017 6 680 3355 174 37 17 chr3 12556716 12558074 -147041709 - L1_Mus2 LINE L1 -4115 1768 383 6 680 228 135 0 0 chr3 12558389 12558426 -147041357 + (TG)n Simple_repeat Simple_repeat 2 38 0 6 680 420 143 0 0 chr3 12558821 12558891 -147040892 + (TA)n Simple_repeat Simple_repeat 2 71 0 6 680 263 353 81 17 chr3 12559377 12559550 -147040233 - L2a LINE L2 -296 3130 2947 6 680 209 237 35 69 chr3 12559879 12560024 -147039759 + (TAGA)n Simple_repeat Simple_repeat 4 143 0 6 680 627 81 0 0 chr3 12560058 12560144 -147039639 + (GA)n Simple_repeat Simple_repeat 2 87 0 6 680 6934 234 22 27 chr3 12560154 12563000 -147036783 + Lx5 LINE L1 4216 7049 -1 6 680 237 132 0 0 chr3 12563040 12563078 -147036705 + (CAGA)n Simple_repeat Simple_repeat 2 39 0 7 680 24 67 0 0 chr3 12563564 12563609 -147036174 + AT_rich Low_complexity Low_complexity 1 45 0 7 680 22 0 0 0 chr3 12563833 12563855 -147035928 + AT_rich Low_complexity Low_complexity 1 22 0 7 680 458 314 74 34 chr3 12563891 12564066 -147035717 - B3 SINE B2 -27 189 8 7 680 1600 262 53 14 chr3 12564262 12564680 -147035103 - Lx6 LINE L1 -11 7449 7016 7 680 29 28 0 0 chr3 12564758 12564794 -147034989 + AT_rich Low_complexity Low_complexity 1 36 0 7 680 968 87 0 0 chr3 12565057 12565184 -147034599 - B1_Mus1 SINE Alu 0 148 22 7 680 492 259 142 27 chr3 12565870 12566235 -147033548 + L1MA8 LINE L1 5527 5933 -358 7 680 3496 184 42 31 chr3 12566263 12566969 -147032814 - RMER6D LTR ERVK -6 714 1 7 680 247 49 49 0 chr3 12567172 12567213 -147032570 + (TA)n Simple_repeat Simple_repeat 1 43 0 7 680 330 239 0 33 chr3 12567505 12567582 -147032201 - L1Md_F LINE L1 -5989 530 454 8 680 1463 101 23 0 chr3 12567582 12567800 -147031983 + L1_Mus1 LINE L1 6345 6567 0 8 680 330 239 0 33 chr3 12567800 12567813 -147031970 - L1Md_F LINE L1 -6066 453 443 8 680 237 98 0 0 chr3 12568053 12568094 -147031689 + (T)n Simple_repeat Simple_repeat 1 41 0 8 680 4206 137 79 38 chr3 12569578 12570396 -147029387 + Lx3A LINE L1 5545 6386 -595 8 680 972 157 9 54 chr3 12570411 12570633 -147029150 + Lx3A LINE L1 6770 6981 0 8 680 270 330 147 0 chr3 12571179 12571288 -147028495 + RSINE1 SINE B4 6 130 -35 8 680 23 54 0 0 chr3 12571315 12571352 -147028431 + AT_rich Low_complexity Low_complexity 1 37 0 8 680 216 97 0 0 chr3 12571370 12571401 -147028382 + (TATATG)n Simple_repeat Simple_repeat 4 34 0 8 680 451 33 0 0 chr3 12571401 12571461 -147028322 + L1_Mus2 LINE L1 6507 6566 0 8 680 279 0 0 0 chr3 12571473 12571504 -147028279 + (TTTA)n Simple_repeat Simple_repeat 1 31 0 8 680 8258 118 41 28 chr3 12571504 12573678 -147026105 - Lx3_Mus LINE L1 -23 6986 4790 8 680 37723 19 18 22 chr3 12573685 12575331 -147024452 - L1Md_A LINE L1 0 6582 4920 9 680 233 283 31 61 chr3 12575331 12575429 -147024354 + RMER20A LTR ERVK 186 280 -236 9 680 37723 19 18 22 chr3 12575429 12579863 -147019920 - L1Md_A LINE L1 0 4919 439 9 680 20297 114 26 62 chr3 12579851 12579915 -147019868 - L1_Mur1 LINE L1 -1077 4809 4740 9 680 2039 55 0 0 chr3 12579915 12580172 -147019611 - L1Md_A LINE L1 0 6582 6326 9 10 20297 114 26 62 chr3 12580172 12583292 -147016491 - L1_Mur1 LINE L1 -1147 4739 1744 9 681 8615 23 0 0 chr3 12583292 12584288 -147015495 + L1Md_A LINE L1 5587 6582 0 9 681 20297 114 26 62 chr3 12584288 12584480 -147015303 - L1_Mur1 LINE L1 -4143 1743 1588 9 681 324 0 0 0 chr3 12584480 12584516 -147015267 + (TC)n Simple_repeat Simple_repeat 2 37 0 9 681 20297 112 38 49 chr3 12584516 12584923 -147014860 - L1_Mur1 LINE L1 -4299 1587 1091 9 681 1859 137 252 31 chr3 12585036 12585489 -147014294 + RLTR6_Mm LTR ERV1 37 589 -65 9 681 2627 29 0 0 chr3 12585504 12585813 -147013970 + RLTR6-int LTR ERV1 1 309 -7469 9 681 29792 39 1 1 chr3 12585807 12589322 -147010461 + RLTR6-int LTR ERV1 4266 7778 0 9 681 1845 134 254 31 chr3 12589435 12589883 -147009900 + RLTR6_Mm LTR ERV1 37 584 -70 9 681 2595 176 58 10 chr3 12589883 12590400 -147009383 - L1_Mur1 LINE L1 -5890 1094 553 9 681 659 213 0 8 chr3 12590393 12590521 -147009262 - L1_Mur1 LINE L1 -6647 337 211 9 681 494 311 0 8 chr3 12590648 12590781 -147009002 - Lx9 LINE L1 -381 7263 7132 9 681 483 282 72 8 chr3 12590770 12591034 -147008749 + Lx9 LINE L1 7356 7636 -8 9 681 698 318 15 0 chr3 12592028 12592056 -147007727 - B3 SINE B2 0 216 189 9 681 198 0 0 0 chr3 12592056 12592078 -147007705 + (TA)n Simple_repeat Simple_repeat 2 23 0 1 681 698 318 15 0 chr3 12592078 12592247 -147007536 - B3 SINE B2 -28 188 17 9 681 3602 102 9 2 chr3 12592398 12592927 -147006856 - L1_Mus3 LINE L1 -12 6626 6094 1 681 1070 96 0 0 chr3 12592927 12593073 -147006710 + L1_Mus3 LINE L1 5983 6128 -510 1 681 25 0 0 0 chr3 12594706 12594731 -147005052 + AT_rich Low_complexity Low_complexity 1 25 0 1 681 417 236 0 0 chr3 12594761 12594909 -147004874 + (TG)n Simple_repeat Simple_repeat 2 149 0 1 681 3414 30 2 0 chr3 12595658 12596053 -147003730 - MTA_Mm LTR MaLR 0 396 1 1 681 209 180 40 0 chr3 12596913 12596963 -147002820 + (TAAA)n Simple_repeat Simple_repeat 2 53 0 1 681 357 145 40 0 chr3 12596993 12597069 -147002714 - L1Md_F2 LINE L1 0 6582 6504 1 681 2824 128 9 9 chr3 12597070 12597526 -147002257 - L1VL1 LINE L1 -320 5563 5108 1 681 7867 107 20 3 chr3 12597527 12599391 -147000392 - L1VL1 LINE L1 -3770 2113 217 1 681 1285 211 7 26 chr3 12599393 12599700 -147000083 - L1Md_F LINE L1 -5648 871 571 1 681 422 273 26 39 chr3 12599749 12599905 -146999878 - Lx4B LINE L1 -5 7053 6900 1 681 7363 207 127 12 chr3 12600003 12602843 -146996940 - Lx4B LINE L1 -530 6528 3303 1 681 261 0 0 0 chr3 12602843 12602872 -146996911 + (TG)n Simple_repeat Simple_repeat 2 30 0 1 681 7363 187 114 7 chr3 12602872 12603034 -146996749 - Lx4B LINE L1 -2575 3302 3135 1 681 1990 227 62 42 chr3 12603025 12603938 -146995845 - L1VL4 LINE L1 -2120 1439 499 1 681 21 0 0 0 chr3 12604793 12604814 -146994969 + AT_rich Low_complexity Low_complexity 1 21 0 1 681 536 376 42 0 chr3 12604941 12605130 -146994653 + B4 SINE B4 5 201 -91 1 681 312 27 0 0 chr3 12605766 12605803 -146993980 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 681 342 0 0 0 chr3 12605803 12605840 -146993943 + (GA)n Simple_repeat Simple_repeat 2 39 0 1 681 28 0 0 0 chr3 12606711 12606739 -146993044 + AT_rich Low_complexity Low_complexity 1 28 0 1 681 3318 11 0 0 chr3 12606810 12607187 -146992596 + L1Md_T LINE L1 6206 6582 0 1 681 22 0 0 0 chr3 12607791 12607813 -146991970 + AT_rich Low_complexity Low_complexity 1 22 0 1 681 35 63 0 0 chr3 12607879 12607942 -146991841 + AT_rich Low_complexity Low_complexity 1 63 0 1 681 640 164 7 7 chr3 12609217 12609352 -146990431 + (TA)n Simple_repeat Simple_repeat 1 135 0 1 681 295 183 55 55 chr3 12609598 12609725 -146990058 + Lx9 LINE L1 7510 7636 -8 1 681 27 73 0 0 chr3 12609995 12610050 -146989733 + AT_rich Low_complexity Low_complexity 1 55 0 1 681 5974 176 16 5 chr3 12610202 12611793 -146987990 - Lx LINE L1 -12 6642 5040 1 681 5837 138 13 5 chr3 12611765 12613039 -146986744 - L1VL4 LINE L1 -2263 1296 10 1 681 1101 89 7 0 chr3 12613045 12613191 -146986592 - B1_Mus1 SINE Alu -1 147 1 1 681 21 0 0 0 chr3 12613262 12613283 -146986500 + AT_rich Low_complexity Low_complexity 1 21 0 1 681 282 152 0 0 chr3 12615149 12615208 -146984575 + (TG)n Simple_repeat Simple_repeat 2 60 0 1 681 419 291 19 63 chr3 12615214 12615372 -146984411 - RLTR40 LTR ERVK -14 803 653 1 681 228 146 71 35 chr3 12615503 12615588 -146984195 + (TAGA)n Simple_repeat Simple_repeat 4 91 0 1 681 7717 138 22 42 chr3 12615766 12616055 -146983728 + Lx3B LINE L1 5619 5907 -1066 1 681 824 55 9 0 chr3 12616055 12616165 -146983618 + (GAA)n Simple_repeat Simple_repeat 2 112 0 1 681 7717 138 22 42 chr3 12616165 12617255 -146982528 + Lx3B LINE L1 5908 6970 -3 1 681 3124 68 5 0 chr3 12617349 12617743 -146982040 + MTA_Mm LTR MaLR 1 396 0 1 681 934 325 53 74 chr3 12617762 12618380 -146981403 + Lx8 LINE L1 6334 6938 -535 1 681 2876 175 30 11 chr3 12618391 12619567 -146980216 + L1Md_F LINE L1 507 1706 -4177 1 681 307 96 0 0 chr3 12619564 12619616 -146980167 + MusHAL1 LINE L1 1354 1405 -1307 1 681 30918 86 11 22 chr3 12619617 12625330 -146974453 + L1Md_F2 LINE L1 99 5586 -297 1 681 7861 53 2 4 chr3 12625331 12626316 -146973467 + L1Md_F2 LINE L1 5588 6570 -12 1 681 1439 188 0 11 chr3 12626355 12626635 -146973148 + L1_Mus1 LINE L1 2596 2872 -3011 1 681 6617 111 8 15 chr3 12626618 12627820 -146971963 + L1_Mus1 LINE L1 5373 6567 0 1 681 1008 312 74 30 chr3 12627875 12628401 -146971382 + Lx8 LINE L1 6923 7471 -2 1 681 1900 158 9 9 chr3 12628845 12629171 -146970612 - ORR1A2 LTR MaLR -1 326 1 1 681 23 54 0 0 chr3 12631965 12632002 -146967781 + AT_rich Low_complexity Low_complexity 1 37 0 1 681 1100 236 102 60 chr3 12632768 12633083 -146966700 - ORR1C1 LTR MaLR -50 328 1 1 681 374 333 90 48 chr3 12633276 12633421 -146966362 + RSINE1 SINE B4 2 152 -13 1 681 250 325 32 71 chr3 12633467 12633593 -146966190 + B3A SINE B2 2 122 -76 1 681 596 150 9 0 chr3 12633977 12634090 -146965693 + (TA)n Simple_repeat Simple_repeat 2 115 0 1 681 265 32 0 0 chr3 12634090 12634121 -146965662 + (TG)n Simple_repeat Simple_repeat 1 31 0 1 681 748 284 20 10 chr3 12634177 12634380 -146965403 - B3 SINE B2 -6 210 6 1 681 31 26 0 0 chr3 12634639 12634677 -146965106 + AT_rich Low_complexity Low_complexity 1 38 0 1 681 246 154 0 0 chr3 12635490 12635529 -146964254 + T-rich Low_complexity Low_complexity 1 39 0 1 681 278 341 149 6 chr3 12636708 12636876 -146962907 + ORR1E LTR MaLR 1 192 -167 1 681 183 80 0 0 chr3 12636955 12636980 -146962803 + (CA)n Simple_repeat Simple_repeat 2 26 0 1 681 558 63 0 0 chr3 12636980 12637058 -146962725 + (GA)n Simple_repeat Simple_repeat 2 80 0 1 681 4995 169 16 5 chr3 12637141 12638627 -146961156 - Lx3B LINE L1 -213 6763 5192 1 681 3950 160 29 9 chr3 12638627 12639284 -146960499 - RLTR17 LTR ERVK -22 670 1 1 681 627 341 61 25 chr3 12640503 12640783 -146959000 + B4A SINE B4 2 291 -1 1 681 2860 140 130 13 chr3 12640783 12641306 -146958477 - MT2B2 LTR ERVL 0 584 1 1 681 287 213 0 13 chr3 12641307 12641383 -146958400 + (CATA)n Simple_repeat Simple_repeat 4 78 0 1 681 189 0 0 0 chr3 12642475 12642496 -146957287 + (T)n Simple_repeat Simple_repeat 1 21 0 1 681 1963 127 3 79 chr3 12642755 12643096 -146956687 + ORR1A2 LTR MaLR 13 327 0 1 681 21 57 0 0 chr3 12643223 12643258 -146956525 + AT_rich Low_complexity Low_complexity 1 35 0 1 681 890 324 104 45 chr3 12643294 12643756 -146956027 + MER67D LTR ERV1 22 510 -4 1 681 3091 89 7 9 chr3 12643797 12644227 -146955556 + L1_Mus1 LINE L1 6137 6565 -2 1 681 30 27 0 0 chr3 12645278 12645315 -146954468 + AT_rich Low_complexity Low_complexity 1 37 0 1 681 27646 72 4 18 chr3 12645570 12650030 -146949753 + L1Md_F2 LINE L1 487 4881 -1002 1 681 768 100 0 0 chr3 12650029 12650129 -146949654 + L1Md_F2 LINE L1 5487 5586 -297 1 681 7602 56 22 1 chr3 12650130 12651094 -146948689 + L1Md_F2 LINE L1 5588 6571 -11 1 681 305 221 0 13 chr3 12651110 12651121 -146948662 + Lx6 LINE L1 5827 5837 -1623 1 681 2847 42 8 3 chr3 12651121 12651479 -146948304 - L1Md_F3 LINE L1 -2 6582 6223 1 681 3201 39 3 0 chr3 12651479 12651864 -146947919 + L1Md_F3 LINE L1 5841 6226 -358 1 681 3127 166 268 54 chr3 12651879 12652730 -146947053 + RLTR13D4 LTR ERVK 1 1033 0 1 681 203 114 23 0 chr3 12653454 12653498 -146946285 + (ATTG)n Simple_repeat Simple_repeat 4 48 0 1 681 210 300 0 57 chr3 12653565 12653618 -146946165 - ID_B1 SINE B4 -97 127 78 1 681 339 328 47 89 chr3 12653610 12653824 -146945959 - B3 SINE B2 -8 208 4 1 681 31 0 0 0 chr3 12654869 12654900 -146944883 + AT_rich Low_complexity Low_complexity 1 31 0 1 681 354 276 26 46 chr3 12655005 12655035 -146944748 + Lx9 LINE L1 7310 7334 -310 1 681 1682 215 39 0 chr3 12655035 12655398 -146944385 - ORR1C1 LTR MaLR 0 378 2 1 681 354 276 26 46 chr3 12655398 12655561 -146944222 + Lx9 LINE L1 7335 7499 -145 1 681 27 29 0 0 chr3 12655679 12655713 -146944070 + AT_rich Low_complexity Low_complexity 1 34 0 1 681 1358 196 26 0 chr3 12655742 12656007 -146943776 - RMER19B LTR ERVK -630 272 1 1 681 1765 245 57 8 chr3 12656007 12656484 -146943299 + Lx7 LINE L1 6916 7415 -281 1 681 269 274 47 0 chr3 12656577 12656683 -146943100 + Lx7 LINE L1 7586 7696 0 1 681 1348 214 119 19 chr3 12657537 12657856 -146941927 - ORR1B2 LTR MaLR 0 367 17 1 681 732 246 185 30 chr3 12657860 12658158 -146941625 + ORR1D1 LTR MaLR 31 374 0 1 681 21 57 0 0 chr3 12658357 12658392 -146941391 + AT_rich Low_complexity Low_complexity 1 35 0 1 681 20082 127 18 10 chr3 12658392 12662453 -146937330 - L1_Mus2 LINE L1 -2 6564 2489 1 681 700 313 84 38 chr3 12662715 12662886 -146936897 - IAPLTR3-int LTR ERVK -5916 905 745 1 681 2783 23 2 207 chr3 12662886 12663374 -146936409 + RLTR10 LTR ERVK 1 388 -2 1 681 700 313 84 38 chr3 12663374 12663654 -146936129 - IAPLTR3-int LTR ERVK -6077 744 433 1 681 429 226 33 50 chr3 12663869 12663990 -146935793 - IAPLTR3-int LTR ERVK -6702 119 1 1 681 1737 128 24 49 chr3 12663998 12664326 -146935457 - IAPLTR2b LTR ERVK -7 320 1 1 681 1688 104 4 15 chr3 12664326 12664589 -146935194 + L1Md_F2 LINE L1 6323 6582 0 1 681 21 57 0 0 chr3 12664790 12664825 -146934958 + AT_rich Low_complexity Low_complexity 1 35 0 1 681 253 213 0 0 chr3 12664825 12664872 -146934911 - Lx9 LINE L1 -437 7207 7161 1 681 605 140 27 0 chr3 12664940 12665090 -146934693 + (TA)n Simple_repeat Simple_repeat 1 154 0 1 681 214 266 13 0 chr3 12665100 12665179 -146934604 + (TATAA)n Simple_repeat Simple_repeat 5 84 0 1 681 345 115 39 0 chr3 12665186 12665264 -146934519 + (TA)n Simple_repeat Simple_repeat 1 81 0 1 681 225 0 0 0 chr3 12665264 12665289 -146934494 + (TG)n Simple_repeat Simple_repeat 2 26 0 1 681 1167 271 75 95 chr3 12665289 12665783 -146934000 - Lx9 LINE L1 -517 7127 6644 1 681 840 268 106 17 chr3 12665789 12666138 -146933645 + Lx9 LINE L1 7262 7641 -3 1 681 28 0 0 0 chr3 12666156 12666184 -146933599 + AT_rich Low_complexity Low_complexity 1 28 0 1 681 21 0 0 0 chr3 12666334 12666355 -146933428 + AT_rich Low_complexity Low_complexity 1 21 0 1 681 3683 208 152 53 chr3 12666371 12667374 -146932409 + RLTR25A LTR ERVK 1 1103 0 1 681 354 312 11 0 chr3 12667683 12667776 -146932007 + ID_B1 SINE B4 94 187 -37 1 681 2249 137 32 94 chr3 12667903 12668431 -146931352 - RLTR1B LTR ERV1 0 512 1 1 681 3184 118 70 26 chr3 12668604 12669144 -146930639 + LTRIS2 LTR ERV1 1 564 0 1 681 1545 126 0 24 chr3 12670823 12671075 -146928708 - Lx LINE L1 -7 6647 6402 1 681 402 262 11 21 chr3 12671842 12671935 -146927848 + RSINE1 SINE B4 5 97 -68 1 681 24 0 0 0 chr3 12671949 12671973 -146927810 + AT_rich Low_complexity Low_complexity 1 24 0 1 681 210 118 0 0 chr3 12672192 12672226 -146927557 + (CA)n Simple_repeat Simple_repeat 2 35 0 1 681 1047 102 7 0 chr3 12672843 12672990 -146926793 + B1_Mus1 SINE Alu 1 148 0 1 681 216 0 0 0 chr3 12672990 12673014 -146926769 + (A)n Simple_repeat Simple_repeat 1 24 0 2 681 23 0 0 0 chr3 12673082 12673105 -146926678 + AT_rich Low_complexity Low_complexity 1 23 0 2 681 353 291 88 122 chr3 12673313 12673535 -146926248 + L1_Mur3 LINE L1 3263 3480 -2400 2 681 1338 40 0 17 chr3 12673535 12673715 -146926068 + L1Md_F2 LINE L1 6406 6582 0 2 681 353 291 88 122 chr3 12673715 12674068 -146925715 + L1_Mur3 LINE L1 3481 3819 -2061 2 681 839 125 11 17 chr3 12674088 12674267 -146925516 + (TCTA)n Simple_repeat Simple_repeat 3 180 0 2 681 238 167 33 0 chr3 12674271 12674331 -146925452 + (TAGA)n Simple_repeat Simple_repeat 4 65 0 2 681 340 292 31 0 chr3 12674331 12674461 -146925322 + L1_Mur3 LINE L1 3799 3932 -1948 2 681 280 356 58 28 chr3 12674615 12674976 -146924807 + L1_Mur3 LINE L1 3888 4259 -1621 2 681 241 185 31 0 chr3 12675186 12675251 -146924532 + CT-rich Low_complexity Low_complexity 2 68 0 2 681 327 380 37 29 chr3 12675342 12675586 -146924197 - Lx8 LINE L1 -121 7352 7107 2 681 695 269 50 114 chr3 12676064 12676484 -146923299 + L1_Mur3 LINE L1 5351 5743 -137 2 681 1101 221 82 67 chr3 12676656 12676883 -146922900 + RMER17C LTR ERVK 1 221 -189 2 681 1115 90 6 0 chr3 12676883 12677049 -146922734 + (TC)n Simple_repeat Simple_repeat 2 168 0 2 681 1101 221 82 67 chr3 12677049 12677223 -146922560 + RMER17C LTR ERVK 222 408 -2 2 681 405 181 311 20 chr3 12678191 12678339 -146921444 - MT2A LTR ERVL -298 195 5 2 681 2670 124 5 0 chr3 12678339 12678735 -146921048 - MTB LTR MaLR 0 400 3 2 681 1006 78 0 0 chr3 12679002 12679143 -146920640 + L1Md_F2 LINE L1 6436 6576 -6 2 681 351 0 0 0 chr3 12679288 12679327 -146920456 + (TAAA)n Simple_repeat Simple_repeat 3 41 0 2 681 286 302 133 36 chr3 12680566 12680866 -146918917 + MLT1A0 LTR MaLR 9 385 -23 2 681 219 152 0 0 chr3 12681042 12681088 -146918695 + (TATG)n Simple_repeat Simple_repeat 2 47 0 2 681 248 0 0 30 chr3 12681830 12681863 -146917920 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 2 681 261 0 0 0 chr3 12681987 12682016 -146917767 + (TTTA)n Simple_repeat Simple_repeat 4 32 0 2 681 2868 56 8 36 chr3 12682021 12682427 -146917356 - L1Md_F2 LINE L1 0 6582 6198 2 681 388 292 84 36 chr3 12682737 12682986 -146916797 + Lx9 LINE L1 7199 7459 -185 2 681 450 36 0 0 chr3 12683034 12683090 -146916693 + (TG)n Simple_repeat Simple_repeat 2 57 0 2 681 3386 58 12 2 chr3 12683399 12683831 -146915952 + L1Md_F3 LINE L1 6147 6582 -2 2 681 436 260 19 0 chr3 12683858 12683962 -146915821 + ORR1D1 LTR MaLR 2 107 -267 2 681 387 0 0 0 chr3 12683977 12684020 -146915763 + (CA)n Simple_repeat Simple_repeat 2 44 0 2 681 279 0 0 0 chr3 12684020 12684050 -146915733 + (TA)n Simple_repeat Simple_repeat 1 31 0 2 681 650 270 30 10 chr3 12684092 12684290 -146915493 + Lx7 LINE L1 6086 6287 -1409 2 681 510 261 8 8 chr3 12684268 12684388 -146915395 - Lx7 LINE L1 -481 7215 7096 2 681 1490 231 28 17 chr3 12684411 12684767 -146915016 + Lx6 LINE L1 6274 6633 -827 2 681 1553 276 77 38 chr3 12684766 12685081 -146914702 + Lx7 LINE L1 7065 7382 -314 2 681 1163 107 0 6 chr3 12685081 12685260 -146914523 + (TTTC)n Simple_repeat Simple_repeat 3 180 0 2 681 1553 276 77 38 chr3 12685260 12685551 -146914232 + Lx7 LINE L1 7383 7695 -1 2 681 510 276 60 0 chr3 12685999 12686115 -146913668 + B1_Mm SINE Alu 3 125 -22 2 681 1854 237 126 16 chr3 12686014 12686640 -146913143 + ORR1B1-int LTR MaLR 665 1359 -150 2 681 378 0 0 0 chr3 12687080 12687122 -146912661 + (TG)n Simple_repeat Simple_repeat 2 43 0 2 681 388 241 96 0 chr3 12687131 12687214 -146912569 - B3 SINE B2 -125 91 1 2 681 292 125 31 0 chr3 12687939 12688003 -146911780 + (TAGA)n Simple_repeat Simple_repeat 2 67 0 2 681 2556 139 35 48 chr3 12688337 12688821 -146910962 - RLTR45 LTR ERVK 0 482 5 2 681 359 73 0 18 chr3 12689731 12689787 -146909996 + (TA)n Simple_repeat Simple_repeat 2 56 0 2 681 243 330 10 0 chr3 12689799 12689899 -146909884 + (TG)n Simple_repeat Simple_repeat 2 102 0 2 681 23 54 0 0 chr3 12690610 12690647 -146909136 + AT_rich Low_complexity Low_complexity 1 37 0 2 681 461 294 39 11 chr3 12691062 12691244 -146908539 - Lx6 LINE L1 -177 7283 7097 2 681 1359 254 83 129 chr3 12691249 12691806 -146907977 + RLTR20C LTR ERVK 4 534 0 2 681 2324 231 43 99 chr3 12691806 12692056 -146907727 - Lx6 LINE L1 -360 7100 6883 2 681 446 155 0 0 chr3 12692056 12692140 -146907643 - L1Md_F2 LINE L1 -1 6581 6498 2 681 2324 231 43 99 chr3 12692140 12692586 -146907197 - Lx6 LINE L1 -578 6882 6443 2 681 727 341 25 79 chr3 12692585 12692863 -146906920 + Lx9 LINE L1 6674 6934 -710 2 681 1264 54 0 15 chr3 12692863 12693127 -146906656 + (TTC)n Simple_repeat Simple_repeat 1 259 0 2 681 1084 96 7 0 chr3 12693133 12693279 -146906504 - B1_Mus2 SINE Alu 0 147 1 2 681 727 341 25 79 chr3 12693279 12693501 -146906282 + Lx9 LINE L1 6935 7154 -490 2 681 22 56 0 0 chr3 12694088 12694124 -146905659 + AT_rich Low_complexity Low_complexity 1 36 0 2 681 365 287 60 28 chr3 12695146 12695384 -146904399 - L1_Rod LINE L1 -370 5813 5554 2 681 1768 202 54 21 chr3 12695626 12696460 -146903323 + Lx2B LINE L1 898 1754 -4123 2 681 9428 212 43 72 chr3 12696461 12697051 -146902732 + Lx2B LINE L1 3218 3808 -2069 2 681 204 97 0 0 chr3 12697051 12697082 -146902701 + (CA)n Simple_repeat Simple_repeat 1 31 0 2 681 9428 212 43 72 chr3 12697082 12697143 -146902640 + Lx2B LINE L1 3809 3858 -2019 2 681 285 29 0 0 chr3 12697143 12697177 -146902606 + (CA)n Simple_repeat Simple_repeat 1 34 0 2 681 9428 212 43 72 chr3 12697177 12697202 -146902581 + Lx2B LINE L1 3859 3881 -1996 2 681 787 114 0 0 chr3 12697202 12697316 -146902467 + B1_Mus1 SINE Alu 34 147 -1 2 681 9428 212 43 72 chr3 12697316 12697333 -146902450 + Lx2B LINE L1 3882 3898 -1979 2 681 252 0 0 0 chr3 12697333 12697361 -146902422 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 2 681 9428 212 43 72 chr3 12697361 12698195 -146901588 + Lx2B LINE L1 3899 4754 -1123 2 681 189 0 0 0 chr3 12698195 12698216 -146901567 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 2 681 9428 226 63 50 chr3 12698216 12700337 -146899446 + Lx2B LINE L1 4755 6981 -19 2 681 1460 52 0 50 chr3 12700544 12700746 -146899037 - B2_Mm1t SINE B2 0 193 2 2 681 5969 141 49 0 chr3 12701236 12702218 -146897565 + Lx2 LINE L1 5962 6991 -6 2 681 681 53 0 0 chr3 12703710 12703804 -146895979 + (CAAAA)n Simple_repeat Simple_repeat 1 94 0 2 681 311 18 35 35 chr3 12704104 12704162 -146895621 + (TTTG)n Simple_repeat Simple_repeat 3 60 0 2 681 1835 159 23 0 chr3 12704870 12705172 -146894611 + RLTR27 LTR ERVK 1 309 0 2 681 336 338 61 65 chr3 12705880 12706129 -146893654 - L1MD2 LINE L1 -2 6748 6510 2 681 1091 111 0 22 chr3 12706129 12706313 -146893470 + (CA)n Simple_repeat Simple_repeat 1 180 0 2 681 336 338 61 65 chr3 12706313 12706573 -146893210 - L1MD2 LINE L1 -241 6509 6242 2 681 290 310 57 62 chr3 12707192 12707577 -146892206 - L1MD2 LINE L1 -1381 5156 4774 2 681 22 0 0 0 chr3 12707606 12707628 -146892155 + AT_rich Low_complexity Low_complexity 1 22 0 2 681 10846 75 3 8 chr3 12707762 12709886 -146889897 - L1Md_F2 LINE L1 -1 6581 4461 2 681 271 264 0 0 chr3 12709897 12709984 -146889799 + T-rich Low_complexity Low_complexity 1 87 0 2 681 4996 150 43 30 chr3 12709988 12710925 -146888858 - Lx3B LINE L1 -3 6970 6022 2 681 4652 56 26 5 chr3 12710928 12711536 -146888247 - L1Md_F2 LINE L1 0 6582 5962 2 681 4215 124 24 15 chr3 12711555 12712226 -146887557 + L1_Mur1 LINE L1 5047 5723 -163 2 681 313 380 42 39 chr3 12712246 12712531 -146887252 - L1MD2 LINE L1 -2009 4528 4243 2 681 396 0 0 0 chr3 12712583 12712627 -146887156 + (TA)n Simple_repeat Simple_repeat 1 44 0 2 681 240 174 113 28 chr3 12712627 12712698 -146887085 - L1MC LINE L1 -2376 3770 3694 2 681 488 16 16 0 chr3 12712761 12712822 -146886961 + (TC)n Simple_repeat Simple_repeat 2 63 0 2 681 279 0 0 0 chr3 12712822 12712852 -146886931 + (TG)n Simple_repeat Simple_repeat 2 32 0 2 682 353 286 88 42 chr3 12714059 12714274 -146885509 - L1MD2 LINE L1 -2892 3645 3421 2 682 2135 91 21 62 chr3 12714288 12714628 -146885155 - ORR1A3 LTR MaLR 0 326 1 2 682 282 325 64 16 chr3 12714667 12714792 -146884991 + ID_B1 SINE B4 93 223 -1 2 682 2255 117 118 1 chr3 12714809 12715519 -146884264 - L1_Mur1 LINE L1 -4359 1527 735 2 682 248 318 0 0 chr3 12715864 12715927 -146883856 - ID4 SINE ID -19 64 2 2 682 640 329 69 81 chr3 12716578 12717186 -146882597 - L1MD2 LINE L1 -4723 1910 1310 2 682 306 384 13 0 chr3 12718089 12718248 -146881535 - Lx8 LINE L1 -144 7329 7169 2 682 1011 315 59 8 chr3 12718246 12718617 -146881166 - Lx6 LINE L1 -6 7454 7065 2 682 661 347 57 19 chr3 12718664 12719034 -146880749 - Lx7 LINE L1 -575 7121 6738 2 682 377 328 38 38 chr3 12719400 12719533 -146880250 - B3 SINE B2 -4 212 80 2 682 411 341 14 7 chr3 12719555 12719694 -146880089 + B1F1 SINE Alu 10 149 0 2 682 21 0 0 0 chr3 12720024 12720045 -146879738 + AT_rich Low_complexity Low_complexity 1 21 0 2 682 1066 86 7 0 chr3 12720050 12720201 -146879582 - L1_Mus2 LINE L1 0 6566 6415 2 682 21 71 0 0 chr3 12720751 12720793 -146878990 + AT_rich Low_complexity Low_complexity 1 42 0 2 682 4261 97 30 0 chr3 12721056 12721666 -146878117 - L1_Mus1 LINE L1 0 6567 5940 2 682 37457 44 0 4 chr3 12721695 12727851 -146871932 - L1Md_T LINE L1 -12 6573 347 2 682 2999 57 2 0 chr3 12727852 12728263 -146871520 - L1_Mus1 LINE L1 -607 5960 5549 2 682 23 0 0 0 chr3 12728362 12728385 -146871398 + AT_rich Low_complexity Low_complexity 1 23 0 2 682 1786 262 34 21 chr3 12728410 12728975 -146870808 - Lx7 LINE L1 -1534 6162 5591 2 682 683 250 49 0 chr3 12728985 12729169 -146870614 + L1_Mur3 LINE L1 4772 4964 -916 2 682 971 234 46 103 chr3 12729420 12729774 -146870009 + L1_Mur2 LINE L1 893 1189 -5897 2 682 207 0 0 0 chr3 12729774 12729797 -146869986 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2 682 4560 241 98 145 chr3 12729797 12730536 -146869247 + L1_Mur2 LINE L1 1190 1946 -3931 2 682 2018 78 87 13 chr3 12730536 12730836 -146868947 + L1_Mus2 LINE L1 6245 6566 0 2 682 4560 245 107 161 chr3 12730836 12731375 -146868408 + L1_Mur2 LINE L1 1947 2633 -3244 2 682 189 0 0 0 chr3 12731375 12731396 -146868387 + (TA)n Simple_repeat Simple_repeat 1 21 0 2 682 4560 245 107 161 chr3 12731396 12733976 -146865807 + L1_Mur2 LINE L1 2634 4835 -1042 2 682 10455 216 66 122 chr3 12734119 12736564 -146863219 + Lx6 LINE L1 2072 4584 -1296 2 682 222 37 0 0 chr3 12736564 12736591 -146863192 + (TTA)n Simple_repeat Simple_repeat 1 27 0 2 682 10455 223 60 89 chr3 12736591 12738940 -146860843 + Lx6 LINE L1 4585 6655 -805 2 682 702 263 169 0 chr3 12738940 12739176 -146860607 - Lx9 LINE L1 -917 6727 6452 2 682 412 331 62 0 chr3 12739480 12739625 -146860158 - RSINE1 SINE B4 -2 163 10 2 682 2089 198 59 25 chr3 12740924 12740985 -146858798 + Lx5 LINE L1 5384 5433 -444 2 682 216 0 0 0 chr3 12740985 12741009 -146858774 + (TAA)n Simple_repeat Simple_repeat 1 24 0 2 682 5634 201 59 25 chr3 12741009 12741477 -146858306 + Lx5 LINE L1 5434 5936 -1114 2 682 2900 95 27 35 chr3 12741477 12741956 -146857827 - IAPLTR2_Mm LTR ERVK 0 475 1 2 682 5634 225 61 26 chr3 12741956 12743031 -146856752 + Lx5 LINE L1 5937 7043 -7 2 682 867 143 0 0 chr3 12746468 12746707 -146853076 + (CA)n Simple_repeat Simple_repeat 1 239 0 2 682 22 0 0 0 chr3 12746707 12746729 -146853054 + AT_rich Low_complexity Low_complexity 1 22 0 2 682 35 0 0 0 chr3 12746845 12746880 -146852903 + AT_rich Low_complexity Low_complexity 1 35 0 2 682 4961 130 76 8 chr3 12746880 12747708 -146852075 - Lx3A LINE L1 -8 6973 6090 2 682 253 183 56 0 chr3 12747708 12747779 -146852004 + Lx3_Mus LINE L1 6075 6149 -860 3 682 664 78 0 0 chr3 12747860 12747950 -146851833 + B1_Mus2 SINE Alu 46 135 -12 3 682 417 20 0 0 chr3 12747950 12748000 -146851783 + (TAAAA)n Simple_repeat Simple_repeat 2 51 0 3 682 995 214 31 0 chr3 12748753 12748949 -146850834 + URR1A DNA MER1_type 1 202 -24 3 682 477 0 0 0 chr3 12749810 12749863 -146849920 + (CA)n Simple_repeat Simple_repeat 2 54 0 3 682 417 153 0 0 chr3 12749870 12749942 -146849841 + (TA)n Simple_repeat Simple_repeat 2 73 0 3 682 314 224 15 0 chr3 12750959 12751026 -146848757 - MamSINE1 SINE tRNA -221 69 2 3 682 193 98 24 24 chr3 12751116 12751158 -146848625 + (TA)n Simple_repeat Simple_repeat 2 43 0 3 682 204 40 0 0 chr3 12751203 12751228 -146848555 + (TG)n Simple_repeat Simple_repeat 2 26 0 3 682 558 29 0 0 chr3 12751512 12751580 -146848203 + (TG)n Simple_repeat Simple_repeat 1 68 0 3 682 320 136 0 0 chr3 12752251 12752317 -146847466 - Lx LINE L1 -2 6652 6587 3 682 1858 134 10 3 chr3 12753770 12754061 -146845722 + ORR1A2 LTR MaLR 1 293 -34 3 682 336 347 44 78 chr3 12754070 12754276 -146845507 + L1MB8 LINE L1 5942 6140 -38 3 682 1035 96 0 52 chr3 12754414 12754568 -146845215 + B1_Mus2 SINE Alu 2 147 0 3 682 1055 86 18 6 chr3 12754588 12754752 -146845031 - L1_Mus1 LINE L1 0 6567 6402 3 682 858 315 69 6 chr3 12754752 12755341 -146844442 - Lx5 LINE L1 -541 6919 6509 3 682 1198 228 15 36 chr3 12755343 12755675 -146844108 - L1_Mur3 LINE L1 -26 5851 5527 3 682 7673 214 33 46 chr3 12755668 12756825 -146842958 - L1_Mur3 LINE L1 -2490 3387 2214 3 682 1648 203 29 8 chr3 12756825 12756895 -146842888 - Lx LINE L1 -7 6647 6577 3 682 486 0 0 0 chr3 12756895 12756949 -146842834 + (TCCA)n Simple_repeat Simple_repeat 2 55 0 3 682 1648 203 29 8 chr3 12756949 12757255 -146842528 - Lx LINE L1 -78 6576 6263 3 682 7673 214 33 46 chr3 12757255 12758316 -146841467 - L1_Mur3 LINE L1 -3664 2213 1198 3 682 291 85 0 0 chr3 12758316 12758363 -146841420 + (TG)n Simple_repeat Simple_repeat 2 48 0 3 682 1094 270 40 12 chr3 12758363 12758620 -146841163 - L1_Mur3 LINE L1 -6531 1197 929 3 682 272 314 82 39 chr3 12759432 12759687 -146840096 - L1MA8 LINE L1 -369 5922 5657 3 682 336 48 0 0 chr3 12759948 12759990 -146839793 + (TG)n Simple_repeat Simple_repeat 1 42 0 3 682 21 0 0 0 chr3 12760700 12760721 -146839062 + AT_rich Low_complexity Low_complexity 1 21 0 3 682 198 0 0 0 chr3 12761265 12761287 -146838496 + (TTA)n Simple_repeat Simple_repeat 2 23 0 3 682 195 129 0 0 chr3 12761290 12761321 -146838462 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 3 682 1023 90 14 0 chr3 12761321 12761466 -146838317 - B1_Mus1 SINE Alu 0 148 2 3 682 378 0 0 0 chr3 12761807 12761849 -146837934 + (CA)n Simple_repeat Simple_repeat 2 43 0 3 682 364 229 183 0 chr3 12761867 12762042 -146837741 + L1MC3 LINE L1 6898 7104 -681 3 682 394 335 88 0 chr3 12762044 12762238 -146837545 + MLT2B2 LTR ERVL 1 211 -304 3 682 414 39 0 0 chr3 12763087 12763139 -146836644 + (TG)n Simple_repeat Simple_repeat 1 52 0 3 682 3805 172 40 63 chr3 12763292 12763944 -146835839 - Lx LINE L1 -1 6653 6010 3 682 695 64 9 0 chr3 12763944 12764053 -146835730 - L1_Mus1 LINE L1 0 6567 6458 3 682 3805 172 40 63 chr3 12764053 12764208 -146835575 - Lx LINE L1 -645 6009 5865 3 682 40 73 0 0 chr3 12764747 12764829 -146834954 + AT_rich Low_complexity Low_complexity 1 82 0 3 682 945 272 43 110 chr3 12764829 12765292 -146834491 - Lx9 LINE L1 -15 7629 7198 3 682 22 35 0 0 chr3 12765362 12765391 -146834392 + AT_rich Low_complexity Low_complexity 1 29 0 3 682 28 0 0 0 chr3 12766592 12766620 -146833163 + AT_rich Low_complexity Low_complexity 1 28 0 3 682 181 119 48 0 chr3 12766840 12766882 -146832901 + (CAA)n Simple_repeat Simple_repeat 2 45 0 3 682 354 335 98 17 chr3 12767571 12767805 -146831978 - L1MC4 LINE L1 -440 7602 7350 3 682 623 321 22 18 chr3 12767867 12768089 -146831694 + MTEa LTR MaLR 153 375 -4 3 682 566 286 0 28 chr3 12768398 12768542 -146831241 - B1_Mur1 SINE Alu -1 148 9 3 682 3616 147 10 19 chr3 12768736 12769352 -146830431 + Lx2B LINE L1 6389 6998 -2 3 682 205 182 0 0 chr3 12770824 12770868 -146828915 + T-rich Low_complexity Low_complexity 1 44 0 3 682 1070 75 0 20 chr3 12770868 12771018 -146828765 - B1_Mus2 SINE Alu 0 147 1 3 682 2112 148 14 25 chr3 12771148 12771508 -146828275 - Lx4A LINE L1 -3 7055 6700 3 682 2152 193 27 2 chr3 12771508 12771914 -146827869 + Lx4A LINE L1 6204 6619 -439 3 682 196 127 18 18 chr3 12772808 12772864 -146826919 + T-rich Low_complexity Low_complexity 5 60 0 3 682 276 283 163 0 chr3 12773050 12773142 -146826641 - MLT1A1 LTR MaLR -301 107 1 3 682 5271 118 15 10 chr3 12773149 12773970 -146825813 - L1_Mus2 LINE L1 -461 5422 4598 3 682 7516 89 1 0 chr3 12773969 12775117 -146824666 + L1_Mus2 LINE L1 5418 6566 0 3 682 29 28 0 0 chr3 12775117 12775153 -146824630 + AT_rich Low_complexity Low_complexity 1 36 0 3 682 593 189 0 14 chr3 12775930 12776075 -146823708 + CT-rich Low_complexity Low_complexity 4 146 0 3 682 1794 297 131 21 chr3 12776076 12777112 -146822671 - Lx6 LINE L1 -28 7432 6068 3 682 1985 149 6 0 chr3 12777315 12777630 -146822153 + ORR1A4 LTR MaLR 5 321 -8 3 682 415 256 84 27 chr3 12777718 12777948 -146821835 + L1M2 LINE L1 5423 5660 -529 3 682 453 231 19 0 chr3 12777970 12778074 -146821709 + B1_Mur4 SINE Alu 37 142 -8 3 682 263 271 0 0 chr3 12778077 12778147 -146821636 + A-rich Low_complexity Low_complexity 1 70 0 3 682 297 0 0 0 chr3 12778397 12778430 -146821353 + (TG)n Simple_repeat Simple_repeat 2 34 0 3 682 34 42 0 0 chr3 12778899 12778947 -146820836 + AT_rich Low_complexity Low_complexity 1 48 0 3 682 890 169 56 34 chr3 12779130 12779154 -146820629 + RMER6C LTR ERVK 1 24 -696 3 682 3499 48 79 2 chr3 12779154 12779595 -146820188 + MT2C_Mm LTR ERVL 1 475 0 3 682 890 169 56 34 chr3 12779595 12779748 -146820035 + RMER6C LTR ERVK 25 182 -538 3 682 1440 187 35 43 chr3 12779748 12780095 -146819688 + RMER6C LTR ERVK 347 690 0 3 682 396 0 0 0 chr3 12781110 12781154 -146818629 + (TAAA)n Simple_repeat Simple_repeat 3 46 0 3 682 583 289 130 17 chr3 12781261 12781500 -146818283 + B4 SINE B4 14 279 -13 3 682 2159 253 10 39 chr3 12781875 12782393 -146817390 - RMER15 LTR ERVL -8 567 65 3 682 993 122 0 0 chr3 12782421 12782560 -146817223 - B1_Mus1 SINE Alu -9 139 1 3 682 265 312 0 0 chr3 12782560 12782628 -146817155 - RMER15 LTR ERVL -504 71 4 3 682 6193 153 14 22 chr3 12782652 12783771 -146816012 + Lx LINE L1 5544 6654 0 3 682 186 43 0 0 chr3 12783782 12783805 -146815978 + (GAAAA)n Simple_repeat Simple_repeat 3 25 0 3 682 1143 107 0 0 chr3 12783805 12783983 -146815800 + (GGAGA)n Simple_repeat Simple_repeat 2 179 0 3 682 590 0 0 14 chr3 12783983 12784054 -146815729 + (GGAAA)n Simple_repeat Simple_repeat 1 70 0 3 682 1275 70 0 0 chr3 12784529 12784700 -146815083 + (TTTC)n Simple_repeat Simple_repeat 2 172 0 3 682 916 121 14 0 chr3 12784700 12784833 -146814950 - B1_Mus1 SINE Alu -11 137 3 3 682 228 67 0 0 chr3 12784842 12784872 -146814911 + (TTTC)n Simple_repeat Simple_repeat 3 32 0 3 682 22 0 0 0 chr3 12787149 12787171 -146812612 + AT_rich Low_complexity Low_complexity 1 22 0 3 682 282 365 19 0 chr3 12787261 12787368 -146812415 - RMER4B LTR ERVK -134 451 343 3 682 822 180 138 5 chr3 12787552 12787770 -146812013 - RMER4B LTR ERVK -338 247 1 3 682 29 78 0 0 chr3 12787774 12787838 -146811945 + AT_rich Low_complexity Low_complexity 1 64 0 3 682 227 344 0 0 chr3 12787914 12788007 -146811776 - Lx7 LINE L1 -29 7667 7575 3 682 37962 55 24 13 chr3 12788188 12794526 -146805257 - L1Md_T LINE L1 0 6582 181 3 682 295 321 99 35 chr3 12794886 12795028 -146804755 + B3A SINE B2 1 151 -47 3 682 324 0 0 0 chr3 12795046 12795082 -146804701 + (CA)n Simple_repeat Simple_repeat 2 37 0 3 682 183 129 0 0 chr3 12796247 12796278 -146803505 + (TG)n Simple_repeat Simple_repeat 2 32 0 3 682 351 0 0 0 chr3 12796498 12796537 -146803246 + (CA)n Simple_repeat Simple_repeat 2 40 0 3 682 414 85 0 0 chr3 12796537 12796595 -146803188 + (TA)n Simple_repeat Simple_repeat 1 59 0 3 682 231 255 44 62 chr3 12796855 12796968 -146802815 + Tigger11a DNA MER2_type 256 366 -369 3 682 5425 128 93 3 chr3 12797080 12798009 -146801774 + Lx3A LINE L1 5963 6974 -7 3 682 2810 109 5 2 chr3 12798166 12798571 -146801212 - L1_Mus3 LINE L1 -7 6631 6226 3 682 559 336 36 32 chr3 12798894 12799143 -146800640 + B4 SINE B4 21 270 -22 3 682 279 0 0 0 chr3 12799158 12799189 -146800594 + (CA)n Simple_repeat Simple_repeat 2 32 0 3 682 335 293 152 22 chr3 12799727 12799957 -146799826 - Lx8 LINE L1 -2 7471 7212 3 682 21 0 0 0 chr3 12800014 12800035 -146799748 + AT_rich Low_complexity Low_complexity 1 21 0 3 682 184 280 58 47 chr3 12800087 12800173 -146799610 - MIRm SINE MIR 0 276 190 3 682 612 40 0 0 chr3 12800777 12800852 -146798931 + (TCTA)n Simple_repeat Simple_repeat 4 78 0 3 682 271 174 0 0 chr3 12801219 12801265 -146798518 - MT2A LTR ERVL 0 533 488 3 682 573 177 0 0 chr3 12801291 12801404 -146798379 + (CA)n Simple_repeat Simple_repeat 2 114 0 3 682 776 244 61 75 chr3 12801404 12801726 -146798057 - MT2B LTR ERVL -59 542 186 3 682 1774 247 74 29 chr3 12801924 12802412 -146797371 - RMER20A LTR ERVK -2 514 5 3 682 1494 234 27 66 chr3 12802582 12802993 -146796790 - L1_Mur3 LINE L1 -127 5750 5356 3 682 1247 79 0 6 chr3 12802994 12803172 -146796611 + (TTTC)n Simple_repeat Simple_repeat 2 178 0 3 682 4098 174 25 5 chr3 12803174 12803942 -146795841 - Lx2 LINE L1 -7 6990 6208 3 682 1216 175 0 9 chr3 12803944 12804163 -146795620 + Lx2 LINE L1 5400 5616 -270 3 682 443 258 23 102 chr3 12804414 12804591 -146795192 + RNLTR23 LTR ERVK 480 642 0 3 682 2968 168 19 27 chr3 12804591 12805177 -146794606 + Lx2 LINE L1 5609 6189 -808 3 682 3094 202 13 14 chr3 12805160 12805874 -146793909 - L1_Mur3 LINE L1 -502 5378 4666 3 682 594 157 0 0 chr3 12805874 12806014 -146793769 + CT-rich Low_complexity Low_complexity 3 142 0 3 682 374 281 95 6 chr3 12806020 12806199 -146793584 + L1MA4 LINE L1 5782 5976 -324 3 682 25 65 0 0 chr3 12806486 12806532 -146793251 + AT_rich Low_complexity Low_complexity 1 46 0 3 682 369 0 0 0 chr3 12806721 12806762 -146793021 + (CA)n Simple_repeat Simple_repeat 2 42 0 4 682 314 341 58 40 chr3 12806775 12806949 -146792834 + Tigger5 DNA MER2_type 1 177 -2229 4 682 8006 96 16 13 chr3 12806997 12807371 -146792412 - L1VL4 LINE L1 -1076 2483 2101 4 682 210 37 0 0 chr3 12807371 12807398 -146792385 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 4 682 8006 96 16 13 chr3 12807398 12808277 -146791506 - L1VL4 LINE L1 -1459 2100 1227 4 682 5422 115 1 1 chr3 12808247 12809125 -146790658 - L1VL4 LINE L1 -2489 1070 193 4 682 558 311 26 64 chr3 12809126 12809469 -146790314 - BGLII_B LTR ERVK -51 390 61 4 682 792 139 23 30 chr3 12809459 12809592 -146790191 - ORR1A2 LTR MaLR -74 253 122 4 682 1471 231 37 77 chr3 12809593 12810032 -146789751 - L1_Mur3 LINE L1 -1199 4681 4273 3 682 198 0 0 0 chr3 12810032 12810054 -146789729 + (TA)n Simple_repeat Simple_repeat 2 23 0 4 682 1471 231 37 77 chr3 12810054 12810131 -146789652 - L1_Mur3 LINE L1 -1608 4272 4186 3 682 234 0 0 0 chr3 12810413 12810439 -146789344 + (CA)n Simple_repeat Simple_repeat 1 26 0 4 682 313 236 46 19 chr3 12810468 12810576 -146789207 + Lx9 LINE L1 7534 7644 0 4 682 914 143 7 0 chr3 12810606 12810746 -146789037 + B1_Mus1 SINE Alu 8 148 0 4 682 216 0 0 0 chr3 12810747 12810771 -146789012 + (CTA)n Simple_repeat Simple_repeat 3 26 0 4 682 294 29 0 0 chr3 12810771 12810806 -146788977 + (TAA)n Simple_repeat Simple_repeat 1 35 0 4 682 22 70 0 0 chr3 12810927 12810970 -146788813 + AT_rich Low_complexity Low_complexity 1 43 0 4 682 21 57 0 0 chr3 12811755 12811790 -146787993 + AT_rich Low_complexity Low_complexity 1 35 0 4 682 686 276 70 5 chr3 12811866 12812066 -146787717 + B3 SINE B2 1 213 -3 4 682 302 184 0 13 chr3 12812492 12812569 -146787214 + C-rich Low_complexity Low_complexity 5 80 0 4 682 22 0 0 0 chr3 12812705 12812727 -146787056 + AT_rich Low_complexity Low_complexity 1 22 0 4 682 341 275 128 29 chr3 12813138 12813310 -146786473 - Lx8 LINE L1 -9 7464 7276 4 682 371 314 76 43 chr3 12813723 12813867 -146785916 + ID_B1 SINE B4 82 227 -65 4 682 183 42 0 0 chr3 12813909 12813933 -146785850 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 4 682 198 0 0 0 chr3 12813998 12814020 -146785763 + (TAAAA)n Simple_repeat Simple_repeat 3 24 0 4 682 442 145 48 0 chr3 12814326 12814409 -146785374 - B2_Mm2 SINE B2 0 195 109 4 682 14875 62 0 0 chr3 12814409 12816377 -146783406 - L1Md_T LINE L1 -2524 3359 1392 4 682 19052 21 0 0 chr3 12816376 12818595 -146781188 + L1Md_T LINE L1 3368 5586 -297 4 682 8456 31 0 0 chr3 12818595 12819591 -146780192 + L1Md_T LINE L1 5587 6582 0 4 682 261 0 0 0 chr3 12819618 12819647 -146780136 + (A)n Simple_repeat Simple_repeat 1 29 0 4 682 848 107 0 8 chr3 12819647 12819770 -146780013 - B2_Mm2 SINE B2 -72 123 2 4 682 226 97 0 0 chr3 12820157 12820188 -146779595 - L1_Mur3 LINE L1 -485 5395 5365 4 682 357 131 0 0 chr3 12820217 12820278 -146779505 + (TCCC)n Simple_repeat Simple_repeat 4 64 0 4 682 1165 68 0 0 chr3 12820555 12820702 -146779081 + B1_Mus2 SINE Alu 1 147 0 4 682 477 90 0 0 chr3 12820722 12820789 -146778994 + (TA)n Simple_repeat Simple_repeat 1 67 0 4 682 21 0 0 0 chr3 12820804 12820825 -146778958 + AT_rich Low_complexity Low_complexity 1 21 0 4 682 28 29 0 0 chr3 12820932 12820967 -146778816 + AT_rich Low_complexity Low_complexity 1 35 0 4 682 306 223 0 0 chr3 12821021 12821142 -146778641 + CT-rich Low_complexity Low_complexity 2 122 0 4 682 282 299 112 0 chr3 12821596 12821703 -146778080 - MLT1J LTR MaLR -51 461 343 4 682 261 0 0 0 chr3 12823130 12823159 -146776624 + (TG)n Simple_repeat Simple_repeat 2 30 0 4 682 225 0 0 0 chr3 12823511 12823536 -146776247 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 4 682 2039 133 121 88 chr3 12824884 12825242 -146774541 - RLTR47_MM LTR ERV1 0 532 130 4 682 1086 69 7 20 chr3 12825242 12825390 -146774393 + B1_Mus2 SINE Alu 2 147 0 4 682 2039 133 121 88 chr3 12825390 12825543 -146774240 - RLTR47_MM LTR ERV1 -403 129 4 4 682 594 0 0 0 chr3 12825545 12825611 -146774172 + (TA)n Simple_repeat Simple_repeat 2 67 0 4 682 258 227 113 0 chr3 12826452 12826549 -146773234 - L1M2 LINE L1 -904 5236 5129 4 682 640 257 131 59 chr3 12826615 12826921 -146772862 - Lx8 LINE L1 -29 7444 7117 4 682 315 333 144 23 chr3 12826999 12827214 -146772569 - L1M2 LINE L1 -1062 5081 4841 4 682 487 292 78 96 chr3 12827206 12827539 -146772244 - L1M2 LINE L1 -1737 4406 4080 4 682 947 272 145 6 chr3 12827736 12828061 -146771722 - ORR1D1 LTR MaLR -4 370 1 4 682 3263 41 10 0 chr3 12828069 12828461 -146771322 + MTA_Mm LTR MaLR 1 396 0 4 682 393 249 70 23 chr3 12828572 12828786 -146770997 - L1M2 LINE L1 -2142 4001 3778 4 682 1008 74 155 0 chr3 12828800 12828948 -146770835 + L1_Mus1 LINE L1 6397 6567 0 4 682 227 355 45 58 chr3 12829135 12829359 -146770424 + Charlie24 DNA MER1_type 663 883 -1567 4 682 1446 227 67 92 chr3 12829801 12830081 -146769702 - RMER1C Other Other -2 1340 1066 4 682 5237 104 21 28 chr3 12830081 12830895 -146768888 - RLTR13C2 LTR ERVK 0 808 1 4 682 1446 227 67 92 chr3 12830895 12831080 -146768703 - RMER1C Other Other -277 1065 887 4 682 220 71 71 0 chr3 12831310 12831352 -146768431 + (TAAAA)n Simple_repeat Simple_repeat 2 46 0 4 682 3521 241 71 23 chr3 12831564 12832129 -146767654 - MYSERV-int LTR ERVK -24 6526 5931 4 682 369 0 0 0 chr3 12832129 12832170 -146767613 + (TATG)n Simple_repeat Simple_repeat 2 42 0 4 682 3521 241 71 23 chr3 12832170 12832702 -146767081 - MYSERV-int LTR ERVK -620 5930 5376 4 682 1454 158 4 0 chr3 12832713 12832954 -146766829 - L1_Mm LINE L1 -100 5783 5542 4 682 1254 188 94 77 chr3 12832954 12833358 -146766425 + RLTR10A LTR ERVK 1 411 0 4 682 1393 87 0 5 chr3 12833358 12833565 -146766218 + RLTR10A LTR ERVK 106 311 -100 4 682 480 185 0 0 chr3 12833565 12833657 -146766126 + MMERVK10C-int LTR ERVK 7490 7581 0 4 682 1717 172 20 7 chr3 12833657 12833962 -146765821 + RLTR27 LTR ERVK 1 309 0 4 682 2731 176 42 11 chr3 12833962 12834492 -146765291 - L1_Mur1 LINE L1 -336 5550 5005 4 682 5232 116 26 0 chr3 12834492 12835293 -146764490 + Lx2 LINE L1 6176 6997 0 4 682 361 291 61 28 chr3 12835357 12835537 -146764246 - RMER4A LTR ERVK -28 438 253 4 682 1649 161 43 62 chr3 12835548 12835872 -146763911 - ORR1A3 LTR MaLR -8 318 1 4 682 770 285 63 88 chr3 12835971 12836891 -146762892 - MYSERV-int LTR ERVK -1765 4785 4149 4 682 2389 102 147 5 chr3 12836906 12837322 -146762461 + IAPLTR2_Mm LTR ERVK 1 475 0 4 682 264 97 90 77 chr3 12837347 12837425 -146762358 + IAPEz-int LTR ERVK 3 81 -1906 4 682 3551 101 37 36 chr3 12837437 12838396 -146761387 + IAPEz-int LTR ERVK 10 662 -5819 4 682 2599 82 0 3 chr3 12838396 12838739 -146761044 + IAPEz-int LTR ERVK 1359 1700 -4781 4 682 6822 34 5 18 chr3 12838734 12839572 -146760211 + IAPEz-int LTR ERVK 5653 6479 -2 4 682 2425 99 147 5 chr3 12839574 12839990 -146759793 + IAPLTR2_Mm LTR ERVK 1 475 0 4 682 1109 261 38 36 chr3 12840015 12840380 -146759403 - MYSERV-int LTR ERVK -2411 4139 3774 4 682 386 85 0 0 chr3 12840625 12840684 -146759099 - RLTR12B LTR ERVK -465 63 5 4 682 369 0 0 0 chr3 12840809 12840850 -146758933 + (TG)n Simple_repeat Simple_repeat 2 42 0 4 682 1462 289 16 21 chr3 12841021 12841393 -146758390 + ORR1D2 LTR MaLR 1 370 0 4 682 7167 86 6 2 chr3 12841867 12843132 -146756651 - L1_Mus1 LINE L1 -1 6566 5301 4 682 3176 208 5 115 chr3 12843138 12843626 -146756157 - L1VL4 LINE L1 -3776 2110 1718 4 682 1038 96 7 0 chr3 12843626 12843772 -146756011 - B1_Mus1 SINE Alu 0 148 2 4 682 3176 179 4 98 chr3 12843772 12844724 -146755059 - L1VL4 LINE L1 -4169 1717 827 4 85 6749 67 23 18 chr3 12844728 12846790 -146752993 + RLTR1B-int LTR ERV1 1378 3751 -1312 4 683 3819 59 36 10 chr3 12846790 12847289 -146752494 + RLTR1B LTR ERV1 1 512 0 4 683 758 225 125 6 chr3 12847289 12847498 -146752285 - L1Md_F LINE L1 -5794 825 511 4 683 2167 127 65 0 chr3 12847634 12847958 -146751825 + ORR1A1 LTR MaLR 1 345 -1 4 683 2380 124 72 2 chr3 12847959 12848534 -146751249 + ORR1A1-int LTR MaLR 1 426 -1366 4 683 895 271 137 0 chr3 12848516 12848771 -146751012 - MTC LTR MaLR -31 390 101 4 683 2886 179 67 17 chr3 12848792 12849029 -146750754 + L1_Mur1 LINE L1 679 950 -6034 4 683 5978 77 12 8 chr3 12849029 12849833 -146749950 + RLTR13C2 LTR ERVK 1 808 0 4 683 8598 175 43 19 chr3 12849833 12850273 -146749510 + L1_Mur1 LINE L1 951 1387 -4499 4 683 924 101 7 41 chr3 12850273 12850418 -146749365 + B1_Mus1 SINE Alu 1 140 -8 4 683 288 70 0 0 chr3 12850420 12850463 -146749320 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 4 683 8598 169 11 21 chr3 12850463 12851990 -146747793 + L1_Mur1 LINE L1 1388 2901 -2985 4 683 2028 172 6 0 chr3 12852006 12852360 -146747423 - Lx2 LINE L1 -11 6986 6631 4 683 2044 139 12 3 chr3 12852362 12852708 -146747075 + L1_Mur1 LINE L1 4108 4456 -1430 4 683 1530 164 4 8 chr3 12852704 12852968 -146746815 + Lx3B LINE L1 6357 6619 -354 4 683 1300 238 128 24 chr3 12852971 12853346 -146746437 - MTC LTR MaLR -7 414 1 4 683 239 299 133 10 chr3 12853346 12853439 -146746344 + PB1 SINE Alu 20 124 -3 4 683 293 339 156 17 chr3 12853608 12853788 -146745995 - B3 SINE B2 -6 210 6 4 683 633 191 5 0 chr3 12853924 12854047 -146745736 + B1_Mur4 SINE Alu 24 150 0 4 683 230 303 52 139 chr3 12853949 12854064 -146745719 + B4 SINE B4 137 241 -51 4 683 25 83 0 0 chr3 12854260 12854320 -146745463 + AT_rich Low_complexity Low_complexity 1 60 0 4 683 651 338 81 29 chr3 12854508 12854928 -146744855 - MER70-int LTR ERVL -7 5016 4575 4 683 251 312 12 0 chr3 12855059 12855139 -146744644 - MER70-int LTR ERVL -928 4095 4015 4 683 1369 128 1 0 chr3 12856534 12858068 -146741715 + MMSAT4 Satellite Satellite 1 1534 0 4 683 240 35 0 0 chr3 12858617 12858646 -146741137 + (A)n Simple_repeat Simple_repeat 1 29 0 4 683 1727 210 11 28 chr3 12858995 12859357 -146740426 + ORR1B2 LTR MaLR 4 359 -8 4 683 272 286 19 28 chr3 12859626 12859734 -146740049 + L1MA9 LINE L1 6007 6113 -199 4 683 549 0 0 0 chr3 12859753 12859814 -146739969 + (TA)n Simple_repeat Simple_repeat 2 62 0 4 683 714 67 0 0 chr3 12859829 12859934 -146739849 + (GA)n Simple_repeat Simple_repeat 2 106 0 4 683 198 0 0 0 chr3 12860422 12860444 -146739339 + (TA)n Simple_repeat Simple_repeat 2 23 0 4 683 297 0 0 0 chr3 12862147 12862180 -146737603 + (CA)n Simple_repeat Simple_repeat 2 34 0 4 683 261 0 0 0 chr3 12862180 12862208 -146737575 + (TA)n Simple_repeat Simple_repeat 1 29 0 4 683 235 320 99 33 chr3 12862221 12862373 -146737410 - MIRc SINE MIR -32 236 75 4 683 204 308 26 78 chr3 12862668 12862784 -146736999 + MIRb SINE MIR 75 184 -84 4 683 272 27 27 0 chr3 12863753 12863790 -146735993 + (CA)n Simple_repeat Simple_repeat 2 39 0 4 683 2996 171 14 33 chr3 12863800 12864380 -146735403 + Lx LINE L1 6080 6648 -6 4 683 421 203 175 22 chr3 12865170 12865405 -146734378 - Lx9 LINE L1 -12 7632 7362 4 683 1373 292 86 21 chr3 12865395 12865871 -146733912 + Lx9 LINE L1 6875 7381 -263 4 683 534 322 71 16 chr3 12865893 12866076 -146733707 - B3A SINE B2 0 198 6 4 683 23 0 0 0 chr3 12866093 12866116 -146733667 + AT_rich Low_complexity Low_complexity 1 23 0 4 683 21 57 0 0 chr3 12866696 12866731 -146733052 + AT_rich Low_complexity Low_complexity 1 35 0 4 683 204 205 0 0 chr3 12867208 12867247 -146732536 + (CA)n Simple_repeat Simple_repeat 2 40 0 4 683 197 33 33 0 chr3 12869554 12869584 -146730199 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 4 683 439 208 45 0 chr3 12869821 12869975 -146729808 - Lx9 LINE L1 -1 7643 7483 4 683 397 333 79 40 chr3 12870164 12870392 -146729391 - RMER20B LTR ERVK -282 345 109 5 683 1100 261 54 13 chr3 12870397 12870711 -146729072 - Lx9 LINE L1 -443 7201 6875 4 683 519 60 0 0 chr3 12870725 12870792 -146728991 + (TTTA)n Simple_repeat Simple_repeat 3 69 0 5 683 1025 132 13 0 chr3 12870793 12870945 -146728838 - B2_Mm2 SINE B2 -41 154 1 5 683 1243 269 63 3 chr3 12870945 12871295 -146728488 - Lx9 LINE L1 -763 6881 6511 4 683 264 30 0 0 chr3 12871339 12871372 -146728411 + (TG)n Simple_repeat Simple_repeat 1 33 0 5 683 756 33 0 0 chr3 12871378 12871469 -146728314 + (GA)n Simple_repeat Simple_repeat 2 92 0 5 683 275 268 82 0 chr3 12874087 12874184 -146725599 + L1MA5 LINE L1 5890 5994 -306 5 683 314 200 29 0 chr3 12874324 12874394 -146725389 - U5 snRNA snRNA -38 78 7 5 683 5987 58 3 3 chr3 12874394 12875159 -146724624 + L1Md_F2 LINE L1 5818 6582 0 5 683 306 0 0 0 chr3 12875234 12875268 -146724515 + (TC)n Simple_repeat Simple_repeat 2 35 0 5 683 216 67 0 0 chr3 12875499 12875529 -146724254 + (CA)n Simple_repeat Simple_repeat 2 31 0 5 683 313 295 16 8 chr3 12875566 12875689 -146724094 - L1MA8 LINE L1 -90 6201 6078 5 683 1081 131 43 11 chr3 12876206 12876391 -146723392 + B2_Mm2 SINE B2 1 191 -4 5 683 5743 176 13 14 chr3 12876391 12877498 -146722285 - Lx LINE L1 -328 5555 4450 5 683 1744 128 11 0 chr3 12877495 12877801 -146721982 + Lx LINE L1 5538 5846 -37 5 683 23291 171 21 10 chr3 12877797 12884044 -146715739 + Lx LINE L1 352 6652 -2 5 683 741 23 0 0 chr3 12884088 12884175 -146715608 + (GAGAA)n Simple_repeat Simple_repeat 4 90 0 5 683 4610 175 10 0 chr3 12884175 12884977 -146714806 + Lx LINE L1 5833 6642 -12 5 683 1074 107 0 0 chr3 12885047 12885206 -146714577 + (GAAA)n Simple_repeat Simple_repeat 2 160 0 5 683 3402 28 5 0 chr3 12885467 12885861 -146713922 - MTA_Mm LTR MaLR 0 396 1 5 683 5838 59 7 1 chr3 12885861 12886627 -146713156 - MTA_Mm-int LTR MaLR 0 1098 329 5 683 1904 126 39 21 chr3 12886613 12886945 -146712838 + IAPEY_LTR LTR ERVK 42 379 -6 5 683 2383 84 9 0 chr3 12886948 12887282 -146712501 - MTA_Mm-int LTR MaLR -761 337 1 5 683 3396 33 2 0 chr3 12887284 12887679 -146712104 - MTA_Mm LTR MaLR 0 396 1 5 683 210 341 210 56 chr3 12888620 12888763 -146711020 + RSINE1 SINE B4 1 165 0 5 683 21 71 0 0 chr3 12888801 12888843 -146710940 + AT_rich Low_complexity Low_complexity 1 42 0 5 683 384 237 81 7 chr3 12889158 12889294 -146710489 + Lx9 LINE L1 7491 7636 -8 5 683 1560 265 39 23 chr3 12889298 12889730 -146710053 + Lx5 LINE L1 6612 7050 0 5 683 378 302 0 57 chr3 12889809 12889932 -146709851 + ID_B1 SINE B4 108 223 -1 5 683 216 324 17 75 chr3 12890061 12890181 -146709602 + RSINE1 SINE B4 53 165 0 5 683 405 0 0 0 chr3 12890194 12890239 -146709544 + (TAAA)n Simple_repeat Simple_repeat 4 48 0 5 683 373 358 27 7 chr3 12890257 12890406 -146709377 + RSINE1 SINE B4 14 165 0 5 683 291 243 238 19 chr3 12890451 12890556 -146709227 + B3A SINE B2 21 148 -50 5 683 255 61 0 0 chr3 12890557 12890590 -146709193 + (CA)n Simple_repeat Simple_repeat 2 34 0 5 683 580 234 0 23 chr3 12890911 12891042 -146708741 - URR1B DNA MER1_type -74 151 24 5 683 959 249 5 0 chr3 12891230 12891431 -146708352 - URR1B DNA MER1_type -23 202 1 5 683 1070 319 117 6 chr3 12891517 12892031 -146707752 + Lx8 LINE L1 6358 6928 -545 5 683 3146 228 118 26 chr3 12893699 12894531 -146705252 + RMER13B LTR ERVK 1 908 0 5 683 372 176 19 10 chr3 12895086 12895189 -146704594 + (TA)n Simple_repeat Simple_repeat 1 104 0 5 683 22 56 0 0 chr3 12895417 12895453 -146704330 + AT_rich Low_complexity Low_complexity 1 36 0 5 683 22 56 0 0 chr3 12895552 12895588 -146704195 + AT_rich Low_complexity Low_complexity 1 36 0 5 683 25113 136 5 34 chr3 12896731 12899604 -146700179 + Lx6 LINE L1 410 3251 -2632 5 683 3634 48 4 7 chr3 12899604 12900064 -146699719 - L1Md_F2 LINE L1 0 6582 6124 5 683 25113 141 7 45 chr3 12900064 12902648 -146697135 + Lx6 LINE L1 3252 5681 -1779 5 683 34042 62 24 3 chr3 12902649 12908930 -146690853 - L1Md_F3 LINE L1 -14 6573 55 5 683 1093 234 66 8 chr3 12908929 12909187 -146690596 + Lx6 LINE L1 7177 7449 -11 5 683 759 302 59 17 chr3 12909188 12909427 -146690356 - MTD LTR MaLR -170 249 1 5 683 21 0 0 0 chr3 12910871 12910892 -146688891 + AT_rich Low_complexity Low_complexity 1 21 0 5 683 3261 144 19 27 chr3 12911239 12912325 -146687458 + L1VL4 LINE L1 346 1416 -2143 5 683 17336 171 28 3 chr3 12912318 12913352 -146686431 + L1_Mus3 LINE L1 2417 3477 -2406 5 683 294 53 53 0 chr3 12913352 12913409 -146686374 + (CAAA)n Simple_repeat Simple_repeat 3 62 0 5 683 17336 152 25 5 chr3 12913409 12916498 -146683285 + L1_Mus3 LINE L1 3478 6633 -5 5 683 626 307 106 40 chr3 12916848 12917199 -146682584 - MTEb LTR MaLR 0 379 9 5 683 21 0 0 0 chr3 12917396 12917417 -146682366 + AT_rich Low_complexity Low_complexity 1 21 0 5 683 34 42 0 0 chr3 12917471 12917519 -146682264 + AT_rich Low_complexity Low_complexity 1 48 0 5 683 2673 206 11 78 chr3 12917951 12918308 -146681475 - RMER15 LTR ERVL 0 575 241 5 683 2248 80 119 11 chr3 12918308 12918660 -146681123 - RLTR10 LTR ERVK 0 390 1 5 683 2673 206 11 78 chr3 12918660 12918752 -146681031 - RMER15 LTR ERVL -335 240 157 5 683 216 0 0 0 chr3 12918752 12918776 -146681007 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 5 683 2673 206 11 78 chr3 12918776 12918941 -146680842 - RMER15 LTR ERVL -419 156 1 5 683 207 0 0 0 chr3 12919015 12919038 -146680745 + (TG)n Simple_repeat Simple_repeat 2 24 0 5 683 45 34 0 0 chr3 12919098 12919157 -146680626 + AT_rich Low_complexity Low_complexity 1 59 0 5 683 225 211 0 34 chr3 12919430 12919489 -146680294 - Lx6 LINE L1 -27 7433 7377 5 683 6650 96 52 9 chr3 12919692 12920683 -146679100 - RLTR13D4 LTR ERVK 0 1033 1 5 683 31 68 0 0 chr3 12920768 12920827 -146678956 + AT_rich Low_complexity Low_complexity 1 59 0 5 683 6143 96 3 0 chr3 12921298 12922151 -146677632 + Lx3_Mus LINE L1 6154 7009 0 5 683 224 77 26 0 chr3 12922454 12922493 -146677290 + (TG)n Simple_repeat Simple_repeat 2 41 0 5 683 495 346 6 32 chr3 12922882 12923040 -146676743 + RSINE1 SINE B4 2 155 -10 5 683 3004 77 20 43 chr3 12923397 12923857 -146675926 - L1_Mus2 LINE L1 0 6566 6118 5 683 1982 87 0 0 chr3 12923857 12924132 -146675651 + L1_Mm LINE L1 4968 5242 -641 5 683 6107 55 5 0 chr3 12924759 12925522 -146674261 + L1Md_F2 LINE L1 5802 6568 -14 5 683 249 331 56 112 chr3 12925874 12926017 -146673766 - ID_B1 SINE B4 -7 217 83 5 683 258 258 0 16 chr3 12926052 12926115 -146673668 + (TG)n Simple_repeat Simple_repeat 2 63 0 5 683 21 57 0 0 chr3 12926728 12926763 -146673020 + AT_rich Low_complexity Low_complexity 1 35 0 5 683 3516 77 23 2 chr3 12929179 12929651 -146670132 - RLTR45 LTR ERVK 0 482 1 5 683 16896 59 8 18 chr3 12929651 12931853 -146667930 - RLTR45-int LTR ERVK 0 7244 5065 5 683 3964 80 33 38 chr3 12931846 12932456 -146667327 - RLTR45-int LTR ERVK -3258 3986 3380 5 683 11709 46 40 8 chr3 12932426 12934257 -146665526 - RLTR45-int LTR ERVK -4032 3212 1322 5 683 1128 51 0 0 chr3 12935033 12935171 -146664612 - RLTR45-int LTR ERVK -6426 818 681 5 683 4203 76 112 24 chr3 12935459 12936095 -146663688 - RLTR45-int LTR ERVK -6552 692 1 5 683 3292 84 16 78 chr3 12936095 12936609 -146663174 - RLTR45 LTR ERVK 0 482 1 5 683 5955 273 59 18 chr3 12936882 12937495 -146662288 - Lx6 LINE L1 -42 7418 6760 5 683 251 93 0 23 chr3 12937495 12937539 -146662244 + (ATTG)n Simple_repeat Simple_repeat 2 44 0 5 683 5955 241 58 18 chr3 12937539 12939762 -146660021 - Lx6 LINE L1 -701 6759 4446 5 683 1473 235 76 3 chr3 12939794 12940136 -146659647 - ORR1B2 LTR MaLR 0 367 1 5 683 333 128 190 13 chr3 12940156 12940235 -146659548 - ORR1B2-int LTR MaLR -54 1316 1224 5 683 545 152 33 0 chr3 12940208 12940300 -146659483 - ORR1B2-int LTR MaLR -460 1049 955 5 683 1129 84 1 1 chr3 12940301 12940464 -146659319 - L1_Mus2 LINE L1 -354 6282 6121 5 683 623 311 18 0 chr3 12940596 12940763 -146659020 + B3 SINE B2 26 195 -21 5 683 1484 289 42 9 chr3 12940784 12941242 -146658541 - Lx6 LINE L1 -401 7059 6587 5 683 3167 209 116 47 chr3 12941282 12941556 -146658227 + L1_Mur3 LINE L1 4159 4431 -1449 5 683 1100 75 0 7 chr3 12941556 12941703 -146658080 + B1_Mus1 SINE Alu 3 148 0 5 683 3167 209 116 47 chr3 12941703 12942451 -146657332 + L1_Mur3 LINE L1 4432 5252 -628 5 683 715 186 0 0 chr3 12942465 12942589 -146657194 + L1_Mur3 LINE L1 5514 5637 -243 5 683 1007 303 67 8 chr3 12942833 12943189 -146656594 - RMER20A LTR ERVK 0 516 140 5 683 21 0 0 0 chr3 12944509 12944530 -146655253 + AT_rich Low_complexity Low_complexity 1 21 0 5 683 249 33 0 0 chr3 12944589 12944619 -146655164 + (T)n Simple_repeat Simple_repeat 1 30 0 5 683 672 147 198 0 chr3 12944653 12944769 -146655014 - B1_Mus2 SINE Alu -8 139 1 5 683 1042 329 85 5 chr3 12946319 12946707 -146653076 + MTD LTR MaLR 1 419 0 5 683 3152 161 27 22 chr3 12946856 12947440 -146652343 - Lx2B LINE L1 0 7000 6414 5 683 14873 173 46 9 chr3 12947440 12949718 -146650065 - Lx2B LINE L1 -426 6574 4199 5 683 369 0 0 0 chr3 12949718 12949759 -146650024 + (TA)n Simple_repeat Simple_repeat 1 41 0 5 683 14873 184 55 16 chr3 12949759 12951326 -146648457 - Lx2B LINE L1 -1688 4198 2575 5 683 307 257 95 37 chr3 12951308 12951498 -146648285 - L1M2 LINE L1 -860 5283 5083 5 683 347 276 99 39 chr3 12951641 12951823 -146647960 - L1M2 LINE L1 -1281 4865 4674 5 683 303 140 0 0 chr3 12951866 12951916 -146647867 + (TCCC)n Simple_repeat Simple_repeat 3 52 0 5 683 330 173 0 0 chr3 12951912 12951987 -146647796 + (TCTCTG)n Simple_repeat Simple_repeat 4 78 0 5 683 326 315 68 34 chr3 12951988 12952082 -146647701 - HAL1-3A_ME LINE L1 -730 2128 2027 5 683 246 32 0 0 chr3 12952082 12952113 -146647670 + (TCTG)n Simple_repeat Simple_repeat 2 32 0 5 683 326 315 68 34 chr3 12952113 12952166 -146647617 - HAL1-3A_ME LINE L1 -832 2026 1976 5 683 293 310 50 71 chr3 12952403 12952743 -146647040 - L1M2 LINE L1 -1841 4299 3967 5 683 236 174 0 0 chr3 12953232 12953278 -146646505 + (TTTG)n Simple_repeat Simple_repeat 2 47 0 5 683 198 0 0 0 chr3 12953478 12953500 -146646283 + (T)n Simple_repeat Simple_repeat 1 22 0 5 683 238 238 9 90 chr3 12953892 12954003 -146645780 - L1MA7 LINE L1 -3 6288 6187 5 683 612 50 0 0 chr3 12954011 12954091 -146645692 + (GA)n Simple_repeat Simple_repeat 1 80 0 5 683 373 277 68 41 chr3 12955913 12956060 -146643723 - ID_B1 SINE B4 -1 223 73 5 683 714 24 0 0 chr3 12956111 12956195 -146643588 + (CA)n Simple_repeat Simple_repeat 2 85 0 5 683 24 32 0 0 chr3 12956219 12956250 -146643533 + AT_rich Low_complexity Low_complexity 1 31 0 5 683 29 47 0 0 chr3 12956284 12956327 -146643456 + AT_rich Low_complexity Low_complexity 1 43 0 5 683 1393 135 5 9 chr3 12956327 12956551 -146643232 - Lx2 LINE L1 -11 6986 6764 5 683 361 292 11 0 chr3 12957429 12957518 -146642265 - RSINE1 SINE B4 -70 95 6 5 683 3499 140 20 33 chr3 12957844 12958448 -146641335 - L1_Mus2 LINE L1 -2 6564 5969 5 683 10976 153 17 4 chr3 12958449 12960436 -146639347 - L1_Mm LINE L1 -2142 3741 1729 5 683 3230 115 11 63 chr3 12960436 12960976 -146638807 - RLTR1B LTR ERV1 0 512 1 5 683 748 165 154 5 chr3 12960977 12961178 -146638605 - MuRRS4-int LTR ERV1 -42 5021 4791 5 683 1349 305 17 29 chr3 12961177 12961693 -146638090 - MuRRS4-int LTR ERV1 -792 4271 3762 5 683 7242 165 112 31 chr3 12961696 12964066 -146635717 - MuRRS4-int LTR ERV1 -1638 3425 760 5 683 4748 138 14 19 chr3 12964057 12964830 -146634953 - RMER16-int LTR ERVK -3962 1444 676 5 683 420 191 107 0 chr3 12964821 12964905 -146634878 - RMER16-int LTR ERVK -5086 320 228 5 683 438 271 80 76 chr3 12964898 12965174 -146634609 - MuRRS4-int LTR ERV1 -4599 464 188 5 683 2259 92 3 3 chr3 12965578 12965894 -146633889 - LTRIS2 LTR ERV1 0 564 249 6 683 641 220 330 91 chr3 12965895 12966386 -146633397 - MMERGLN-int LTR ERV1 -6948 608 1 6 683 2951 101 65 59 chr3 12966386 12966892 -146632891 - RLTR1B LTR ERV1 0 512 4 6 683 3094 155 12 6 chr3 12966893 12967912 -146631871 - L1VL4 LINE L1 -2180 1637 606 6 683 3961 127 3 22 chr3 12967980 12968847 -146630936 - L1_Mus2 LINE L1 -494 6072 5225 6 683 2851 103 8 0 chr3 12968847 12969243 -146630540 - MTB LTR MaLR -1 399 1 6 683 3961 164 1 19 chr3 12969243 12969269 -146630514 - L1_Mus2 LINE L1 -659 5224 5199 6 683 3148 109 4 46 chr3 12969269 12969768 -146630015 + L1_Mus2 LINE L1 6089 6566 0 6 683 567 243 21 7 chr3 12969786 12969931 -146629852 - L1VL4 LINE L1 -5795 724 578 6 683 5113 158 26 16 chr3 12970497 12971406 -146628377 - Lx2 LINE L1 -3 6994 6077 6 683 720 35 0 0 chr3 12971407 12971494 -146628289 + (TTTC)n Simple_repeat Simple_repeat 2 88 0 6 683 2674 37 0 15 chr3 12971500 12971826 -146627957 + L1Md_F2 LINE L1 5588 5908 -674 6 683 1277 166 87 18 chr3 12971823 12972099 -146627684 - Lx2 LINE L1 -920 6077 5783 6 683 31 44 0 0 chr3 12973210 12973255 -146626528 + AT_rich Low_complexity Low_complexity 1 45 0 6 85 18284 154 13 68 chr3 12973599 12976349 -146623434 - L1_Mus2 LINE L1 -2 6564 4190 6 684 441 0 0 0 chr3 12976349 12976398 -146623385 + (TA)n Simple_repeat Simple_repeat 1 49 0 6 684 18284 134 17 30 chr3 12976398 12978589 -146621194 - L1_Mus2 LINE L1 -1688 4195 2035 6 684 1047 103 0 0 chr3 12978589 12978735 -146621048 - B1_Mm SINE Alu 0 147 2 6 684 18284 134 17 30 chr3 12978735 12979205 -146620578 - L1_Mus2 LINE L1 -3849 2034 1576 6 684 1199 239 86 27 chr3 12979200 12979608 -146620175 - L1_Mus2 LINE L1 -5632 984 553 6 684 488 380 49 13 chr3 12980640 12981027 -146618756 + Lx8 LINE L1 7072 7472 -1 6 684 4212 8 38 0 chr3 12981101 12981576 -146618207 + MT2_Mm LTR ERVL 1 493 0 6 684 414 0 0 0 chr3 12981576 12981622 -146618161 + (TA)n Simple_repeat Simple_repeat 2 47 0 6 684 303 192 0 0 chr3 12981706 12981784 -146617999 + (TG)n Simple_repeat Simple_repeat 1 78 0 6 684 650 209 81 63 chr3 12981784 12981958 -146617825 - B2_Mm2 SINE B2 -9 186 10 6 684 22 0 0 0 chr3 12982044 12982066 -146617717 + AT_rich Low_complexity Low_complexity 1 22 0 6 684 184 347 63 40 chr3 12982234 12982360 -146617423 + L2 LINE L2 2273 2401 -1018 6 684 1714 153 31 0 chr3 12982566 12982860 -146616923 + ORR1A2 LTR MaLR 1 303 -24 6 684 1081 122 0 27 chr3 12983502 12983687 -146616096 - L1Md_F2 LINE L1 -10 6572 6393 6 684 407 19 19 0 chr3 12984081 12984133 -146615650 + (CAA)n Simple_repeat Simple_repeat 2 54 0 6 684 29782 109 8 5 chr3 12984224 12989423 -146610360 + L1Md_F2 LINE L1 372 5585 -298 6 684 6714 95 37 6 chr3 12989424 12990390 -146609393 + L1Md_F2 LINE L1 5587 6582 0 6 684 192 40 0 0 chr3 12990569 12990594 -146609189 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 6 684 254 118 39 0 chr3 12992068 12992119 -146607664 + CT-rich Low_complexity Low_complexity 1 53 0 6 684 351 0 0 0 chr3 12992221 12992260 -146607523 + (TGAA)n Simple_repeat Simple_repeat 2 40 0 6 684 259 271 50 122 chr3 12992418 12992599 -146607184 + L1_Rod LINE L1 4676 4843 -1300 6 684 1211 137 94 7 chr3 12992862 12993088 -146606695 - IAPEY3_LTR LTR ERVK -4 471 92 6 684 37472 45 0 5 chr3 12993092 12999367 -146600416 - L1Md_T LINE L1 0 6585 246 6 684 450 162 203 0 chr3 12999367 12999478 -146600305 - IAPEY3_LTR LTR ERVK -224 161 1 6 684 443 295 56 37 chr3 12999550 12999880 -146599903 + L1_Rod LINE L1 5154 5552 -748 6 684 1128 314 18 48 chr3 13000226 13000621 -146599162 - MTD LTR MaLR -36 383 1 1 684 21 57 0 0 chr3 13001029 13001064 -146598719 + AT_rich Low_complexity Low_complexity 1 35 0 2 684 335 343 49 123 chr3 13001319 13001708 -146598075 + MTEa LTR MaLR 20 379 0 3 684 642 328 127 42 chr3 13001709 13002119 -146597664 + MTEa-int LTR MaLR 2 446 -1134 3 684 285 291 56 71 chr3 13002772 13002898 -146596885 - B2_Mm1a SINE B2 -55 138 15 4 684 3371 104 21 0 chr3 13003004 13003523 -146596260 - MusHAL1 LINE L1 -1070 1642 1113 5 684 2066 158 6 0 chr3 13003535 13003890 -146595893 + Lx LINE L1 6021 6377 -277 6 684 655 129 0 0 chr3 13003883 13003976 -146595807 - Lx LINE L1 -190 6464 6372 7 684 468 206 10 19 chr3 13003976 13004080 -146595703 - ORR1B1-int LTR MaLR -902 607 505 8 684 2905 113 3 12 chr3 13004080 13004509 -146595274 - L1_Mus1 LINE L1 -273 6703 6080 9 684 420 169 0 0 chr3 13004527 13004604 -146595179 + (TA)n Simple_repeat Simple_repeat 1 77 0 1 684 1095 83 0 0 chr3 13004604 13004748 -146595035 - B1_Mm SINE Alu -3 144 1 1 684 402 319 20 55 chr3 13005129 13005237 -146594546 + RSINE1 SINE B4 25 134 -31 1 684 1512 120 29 4 chr3 13005237 13005479 -146594304 + L1_Mus2 LINE L1 6319 6566 0 1 684 402 319 20 55 chr3 13005479 13005516 -146594267 + RSINE1 SINE B4 135 165 0 1 684 28 29 0 0 chr3 13005555 13005590 -146594193 + AT_rich Low_complexity Low_complexity 1 35 0 1 684 235 294 23 12 chr3 13005760 13005846 -146593937 + MLT1A1 LTR MaLR 309 395 -13 1 684 22 56 0 0 chr3 13007365 13007401 -146592382 + AT_rich Low_complexity Low_complexity 1 36 0 1 684 231 352 14 72 chr3 13007632 13007770 -146592013 - Lx9 LINE L1 -267 7377 7248 1 684 996 280 18 87 chr3 13007787 13007954 -146591829 - Lx9 LINE L1 -468 7176 7036 1 684 375 23 0 0 chr3 13007954 13007998 -146591785 + (TTG)n Simple_repeat Simple_repeat 2 45 0 1 684 1086 90 0 0 chr3 13007998 13008142 -146591641 - B1_Mm SINE Alu -3 144 1 1 684 996 280 18 87 chr3 13008142 13008408 -146591375 - Lx9 LINE L1 -609 7035 6773 1 684 1050 138 32 0 chr3 13008463 13008651 -146591132 - Lx2 LINE L1 -13 6984 6791 2 684 16762 188 9 3 chr3 13008652 13012874 -146586909 - Lx2 LINE L1 -359 6638 2397 2 684 1137 223 30 118 chr3 13012898 13013229 -146586554 + RMER19C LTR ERVK 309 610 -1 2 684 22 56 0 0 chr3 13013502 13013538 -146586245 + AT_rich Low_complexity Low_complexity 1 36 0 2 684 549 305 17 6 chr3 13013674 13013849 -146585934 - Lx8 LINE L1 -681 6792 6616 2 684 493 312 31 18 chr3 13013862 13014087 -146585696 - Lx8 LINE L1 -1000 6473 6246 2 684 1101 337 12 24 chr3 13014323 13014745 -146585038 - Lx8 LINE L1 -657 6816 6400 2 684 360 88 0 0 chr3 13015149 13015206 -146584577 + (TTTTA)n Simple_repeat Simple_repeat 3 59 0 2 684 930 140 21 0 chr3 13015207 13015350 -146584433 - B1_Mus1 SINE Alu 0 148 3 2 684 2938 200 85 36 chr3 13015544 13016438 -146583345 + RMER17B LTR ERVK 1 958 0 2 684 23 0 0 0 chr3 13016953 13016976 -146582807 + AT_rich Low_complexity Low_complexity 1 23 0 2 684 224 200 0 62 chr3 13017067 13017131 -146582652 + (CATATA)n Simple_repeat Simple_repeat 1 60 0 2 684 2610 247 44 32 chr3 13017862 13019033 -146580750 + Lx6 LINE L1 930 2052 -3828 3 684 1132 52 6 25 chr3 13019049 13019208 -146580575 + B2_Mm1t SINE B2 38 193 0 3 684 229 237 17 0 chr3 13019224 13019283 -146580500 + Lx6 LINE L1 2368 2427 -3450 3 684 478 174 21 11 chr3 13019291 13019384 -146580399 + RLTR31_Mm LTR ERVK 1 94 -467 3 684 8194 39 0 10 chr3 13019407 13020589 -146579194 - L1Md_F2 LINE L1 0 6582 5413 3 684 7033 69 0 1 chr3 13020587 13021500 -146578283 + L1Md_F2 LINE L1 4474 5385 -498 3 684 1895 205 26 58 chr3 13021500 13021997 -146577786 + RLTR31_Mm LTR ERVK 81 561 0 3 684 6129 224 67 49 chr3 13021998 13023986 -146575797 + Lx6 LINE L1 2443 4466 -1411 3 684 754 113 0 0 chr3 13023986 13024092 -146575691 + B2_Mm2 SINE B2 2 107 -88 3 684 776 209 6 0 chr3 13024199 13024376 -146575407 + GA-rich Low_complexity Low_complexity 1 178 0 3 684 2875 223 43 14 chr3 13024379 13025212 -146574571 + Lx6 LINE L1 4441 5297 -583 3 684 3582 97 3 0 chr3 13025210 13025792 -146573991 - L1_Mus2 LINE L1 -617 5949 5366 3 684 292 280 96 12 chr3 13025834 13026154 -146573629 + L1MB2 LINE L1 5743 6180 -3 3 684 2096 251 45 17 chr3 13026180 13027129 -146572654 + Lx6 LINE L1 5284 6273 -1187 3 684 584 290 146 4 chr3 13027129 13027368 -146572415 + Lx6 LINE L1 6518 6790 -670 3 684 252 0 0 0 chr3 13027392 13027420 -146572363 + (CA)n Simple_repeat Simple_repeat 2 29 0 3 684 4031 164 39 26 chr3 13027831 13029018 -146570765 + L1VL1 LINE L1 195 1404 -2294 3 684 3959 174 54 8 chr3 13029026 13029902 -146569881 + L1Md_F LINE L1 278 1177 -5547 4 684 6158 105 7 2 chr3 13029902 13030793 -146568990 + L1_Mus3 LINE L1 5737 6631 -7 4 684 570 67 0 0 chr3 13031561 13031636 -146568147 + (CA)n Simple_repeat Simple_repeat 2 76 0 4 684 237 301 39 0 chr3 13031646 13031749 -146568034 + (TA)n Simple_repeat Simple_repeat 2 108 0 4 684 368 211 54 34 chr3 13031752 13031899 -146567884 + Lx9 LINE L1 7484 7633 -11 4 684 280 89 0 0 chr3 13032701 13032746 -146567037 - L1Md_F2 LINE L1 -12 6570 6526 4 684 241 314 155 18 chr3 13033229 13033439 -146566344 - MIR SINE MIR -28 240 2 4 684 28 71 0 0 chr3 13034835 13034891 -146564892 + AT_rich Low_complexity Low_complexity 1 56 0 4 684 234 345 11 11 chr3 13035472 13035560 -146564223 - MER67C LTR ERV1 -452 259 172 4 684 6379 144 15 10 chr3 13036302 13037424 -146562359 + Lx2 LINE L1 5507 6634 -363 4 684 1183 173 9 4 chr3 13037424 13037656 -146562127 + Lx2 LINE L1 6765 6997 0 4 684 427 18 0 0 chr3 13037828 13037885 -146561898 - L1Md_T LINE L1 0 6582 6526 5 684 1258 313 63 7 chr3 13037982 13038590 -146561193 + RMER15 LTR ERVL 1 575 0 5 684 24 0 0 0 chr3 13038888 13038912 -146560871 + AT_rich Low_complexity Low_complexity 1 24 0 5 684 237 315 101 0 chr3 13038999 13039088 -146560695 + Lx7 LINE L1 268 365 -7363 5 684 761 82 9 0 chr3 13039088 13039198 -146560585 + (TTTC)n Simple_repeat Simple_repeat 2 112 0 5 684 1056 110 0 0 chr3 13039199 13039344 -146560439 - B1_Mus1 SINE Alu -2 146 2 5 684 2027 221 33 11 chr3 13039367 13039888 -146559895 + Lx7 LINE L1 5398 5937 -1759 5 684 961 147 0 0 chr3 13039879 13040029 -146559754 - L1_Mus2 LINE L1 -233 6333 6184 5 684 1947 68 0 0 chr3 13040030 13040278 -146559505 + L1_Mus2 LINE L1 6319 6566 0 5 684 4273 271 87 46 chr3 13040279 13041541 -146558242 + Lx7 LINE L1 5925 7218 -478 5 684 306 0 0 0 chr3 13041541 13041575 -146558208 + (TTG)n Simple_repeat Simple_repeat 2 35 0 5 684 4273 271 87 46 chr3 13041575 13041783 -146558000 + Lx7 LINE L1 7219 7433 -263 5 684 459 0 0 0 chr3 13041783 13041834 -146557949 + (TC)n Simple_repeat Simple_repeat 2 52 0 5 684 306 98 0 0 chr3 13041834 13041884 -146557899 + (TG)n Simple_repeat Simple_repeat 2 52 0 5 684 4273 271 87 46 chr3 13041884 13042114 -146557669 + Lx7 LINE L1 7434 7694 -2 5 684 13856 155 27 9 chr3 13042218 13043681 -146556102 + L1VL4 LINE L1 541 2030 -1884 6 684 675 0 0 0 chr3 13043681 13043756 -146556027 + (GAA)n Simple_repeat Simple_repeat 2 76 0 6 684 13856 122 27 8 chr3 13043756 13044506 -146555277 + L1VL4 LINE L1 2031 2787 -1127 6 684 234 62 0 0 chr3 13044506 13044538 -146555245 + (CAA)n Simple_repeat Simple_repeat 1 32 0 6 684 13856 146 26 8 chr3 13044538 13045776 -146554007 + L1VL4 LINE L1 2788 4055 -1831 6 684 5020 168 50 11 chr3 13045777 13046699 -146553084 - RMER17B LTR ERVK 0 958 1 6 684 8793 180 47 14 chr3 13046699 13049551 -146550232 + Lx2 LINE L1 4049 6986 -11 6 684 274 302 79 8 chr3 13049871 13049998 -146549785 - MLT1D LTR MaLR -1 504 369 6 684 642 47 0 0 chr3 13050012 13050098 -146549685 + (TG)n Simple_repeat Simple_repeat 1 86 0 6 684 34 42 0 0 chr3 13050339 13050387 -146549396 + AT_rich Low_complexity Low_complexity 1 48 0 6 684 1563 184 101 0 chr3 13050400 13050726 -146549057 + RLTR15 LTR ERVK 1 359 0 6 684 577 179 48 57 chr3 13051729 13051853 -146547930 + B2_Mm2 SINE B2 3 125 -70 6 684 4411 91 42 0 chr3 13051854 13052290 -146547493 - L1_Mm LINE L1 -194 5689 5251 7 684 198 0 0 0 chr3 13052290 13052312 -146547471 + (TA)n Simple_repeat Simple_repeat 2 23 0 7 684 4411 91 42 0 chr3 13052312 13052499 -146547284 - L1_Mm LINE L1 -633 5250 5041 7 684 5557 109 7 11 chr3 13052500 13053334 -146546449 + L1_Mus1 LINE L1 5737 6567 0 7 684 379 165 84 42 chr3 13053356 13053451 -146546332 + B2_Mm2 SINE B2 91 189 -6 7 684 21 36 0 0 chr3 13053917 13053945 -146545838 + AT_rich Low_complexity Low_complexity 1 28 0 7 684 1321 339 55 11 chr3 13054109 13054760 -146545023 + Lx8 LINE L1 6602 7281 -192 7 684 338 138 25 0 chr3 13054778 13054858 -146544925 + (CAGAGA)n Simple_repeat Simple_repeat 3 84 0 7 684 1506 236 24 29 chr3 13055818 13056198 -146543585 + ORR1C1 LTR MaLR 1 378 0 7 684 192 80 19 74 chr3 13057511 13057565 -146542218 + (TCTCTG)n Simple_repeat Simple_repeat 2 52 0 7 684 488 263 105 0 chr3 13057609 13057723 -146542060 - B1_Mur1 SINE Alu -21 128 3 7 684 291 363 29 0 chr3 13057641 13057743 -146542040 - B4 SINE B4 -123 169 65 8 684 270 218 22 75 chr3 13057856 13057990 -146541793 + Lx2 LINE L1 6860 6986 -11 8 684 3028 37 0 0 chr3 13058431 13058785 -146540998 - IAPEY2_LTR LTR ERVK -3 354 1 8 684 3276 128 15 29 chr3 13058785 13059518 -146540265 - IAPEy-int LTR ERVK 0 7581 6907 8 684 469 51 0 0 chr3 13059518 13059577 -146540206 - IAPEy-int LTR ERVK -2770 4910 4852 8 684 3386 85 7 0 chr3 13059570 13060015 -146539768 - IAPEy-int LTR ERVK -4991 2689 2242 8 684 881 117 0 0 chr3 13059995 13060123 -146539660 - IAPEy-int LTR ERVK -5698 1982 1855 8 684 11849 70 5 2 chr3 13060123 13062391 -146537392 - L1Md_F2 LINE L1 -2 6580 4304 8 684 7535 83 22 0 chr3 13062394 13062626 -146537157 - L1Md_F2 LINE L1 -3567 2316 2073 8 684 207 69 0 0 chr3 13062626 13062655 -146537128 + (TTTA)n Simple_repeat Simple_repeat 3 31 0 8 684 7535 83 22 0 chr3 13062655 13062756 -146537027 - L1Md_F2 LINE L1 -3811 2072 1962 8 684 186 43 0 0 chr3 13062756 13062779 -146537004 + (TTG)n Simple_repeat Simple_repeat 2 24 0 8 684 7535 93 12 10 chr3 13062779 13064450 -146535333 - L1Md_F2 LINE L1 -3922 1961 301 8 684 9111 101 32 10 chr3 13064450 13065919 -146533864 - IAPEy-int LTR ERVK -5620 1893 22 8 684 2338 66 0 0 chr3 13065919 13066221 -146533562 - IAPEY2_LTR LTR ERVK 0 357 56 8 684 7833 37 3 0 chr3 13066221 13067159 -146532624 - L1Md_T LINE L1 -3 6579 5639 8 684 471 143 0 0 chr3 13067159 13067229 -146532554 - IAPEY2_LTR LTR ERVK -287 70 1 8 684 22 35 0 0 chr3 13067914 13067943 -146531840 + AT_rich Low_complexity Low_complexity 1 29 0 8 684 309 263 20 20 chr3 13068513 13068614 -146531169 - L1M2 LINE L1 -1320 4823 4723 8 684 452 18 18 0 chr3 13068624 13068681 -146531102 + (TC)n Simple_repeat Simple_repeat 2 59 0 8 684 215 250 0 0 chr3 13068769 13068821 -146530962 + (TTTA)n Simple_repeat Simple_repeat 2 53 0 9 684 22 35 0 0 chr3 13069012 13069041 -146530742 + AT_rich Low_complexity Low_complexity 1 29 0 9 684 189 0 0 0 chr3 13069156 13069177 -146530606 + (A)n Simple_repeat Simple_repeat 1 21 0 9 684 321 47 0 0 chr3 13069677 13069720 -146530063 + (CA)n Simple_repeat Simple_repeat 2 44 0 9 684 333 0 0 0 chr3 13070292 13070329 -146529454 + (TA)n Simple_repeat Simple_repeat 1 37 0 9 684 573 319 19 5 chr3 13070931 13071142 -146528641 + B3 SINE B2 1 214 -2 9 684 439 303 7 34 chr3 13071166 13071313 -146528470 + Lx8 LINE L1 6258 6400 -1073 9 684 23 0 0 0 chr3 13072440 13072463 -146527320 + AT_rich Low_complexity Low_complexity 1 23 0 9 684 5140 249 54 32 chr3 13073980 13074554 -146525229 - Lx5 LINE L1 -76 6974 6391 9 684 2303 167 59 88 chr3 13074554 13075132 -146524651 + RLTR31_Mm LTR ERVK 1 561 0 9 684 5140 244 39 25 chr3 13075132 13076093 -146523690 - Lx5 LINE L1 -660 6390 5407 9 684 3158 56 0 0 chr3 13076164 13076556 -146523227 + L1Md_F3 LINE L1 6178 6569 -15 1 684 225 0 0 0 chr3 13076605 13076630 -146523153 + (TAA)n Simple_repeat Simple_repeat 1 25 0 1 684 524 307 28 0 chr3 13077146 13077325 -146522458 + MLT2B3 LTR ERVL 1 184 -370 1 684 348 389 17 22 chr3 13077347 13077526 -146522257 + MLT2B3 LTR ERVL 323 500 -62 1 684 348 297 36 125 chr3 13077528 13077603 -146522180 - Tigger7 DNA MER2_type 0 2491 2417 1 684 281 89 0 22 chr3 13077603 13077649 -146522134 + (CATA)n Simple_repeat Simple_repeat 4 48 0 1 684 348 297 36 125 chr3 13077649 13077854 -146521929 - Tigger7 DNA MER2_type -75 2416 2236 1 684 245 388 18 0 chr3 13077834 13078004 -146521779 - Tigger7 DNA MER2_type -2008 483 311 1 684 440 332 162 11 chr3 13078190 13078467 -146521316 + Lx9 LINE L1 6289 6607 -1037 1 684 312 345 27 7 chr3 13078487 13078633 -146521150 + Lx9 LINE L1 6674 6822 -822 1 684 585 284 45 40 chr3 13080016 13080192 -146519591 - B3 SINE B2 -5 211 35 1 684 1458 198 3 104 chr3 13080253 13080619 -146519164 - ORR1A4 LTR MaLR 0 329 1 1 684 1166 145 11 24 chr3 13080619 13080842 -146518941 - ORR1A4-int LTR MaLR -1 1962 1772 1 684 1154 174 121 0 chr3 13080842 13081199 -146518584 - MERVL-int LTR ERVL -1605 3880 3481 1 684 304 154 0 0 chr3 13081204 13081256 -146518527 - ORR1A4 LTR MaLR -277 52 1 1 684 1697 214 96 0 chr3 13081591 13081975 -146517808 + MTC LTR MaLR 1 421 0 1 684 24 0 0 0 chr3 13082136 13082160 -146517623 + AT_rich Low_complexity Low_complexity 1 24 0 1 684 210 71 0 0 chr3 13082550 13082578 -146517205 + (TG)n Simple_repeat Simple_repeat 2 29 0 1 684 411 348 69 6 chr3 13082628 13082787 -146516996 + B3A SINE B2 4 172 -26 1 684 3282 180 40 5 chr3 13082788 13083430 -146516353 - Lx2 LINE L1 -141 5736 5072 1 684 3481 149 30 19 chr3 13083432 13084062 -146515721 + Lx2 LINE L1 5780 6416 -581 1 684 244 200 18 0 chr3 13085623 13085678 -146514105 - MTEb LTR MaLR -30 349 294 1 684 329 318 146 17 chr3 13085918 13086219 -146513564 + L1MC LINE L1 5403 5742 -591 1 684 1436 174 206 12 chr3 13086389 13086710 -146513073 - MTC LTR MaLR 0 421 39 1 684 229 310 142 82 chr3 13087009 13087290 -146512493 - RLTR17 LTR ERVK -269 423 126 1 684 22 35 0 0 chr3 13090090 13090119 -146509664 + AT_rich Low_complexity Low_complexity 1 29 0 1 684 216 97 0 0 chr3 13090384 13090415 -146509368 + (TG)n Simple_repeat Simple_repeat 2 32 0 1 684 914 302 77 24 chr3 13090425 13090761 -146509022 + MTEa LTR MaLR 26 379 0 1 684 590 250 138 15 chr3 13091004 13091199 -146508584 - RMER13A LTR ERVK -398 462 244 1 684 489 283 65 9 chr3 13091282 13091527 -146508256 + L1_Rod LINE L1 3762 4045 -2098 1 684 2405 108 35 25 chr3 13092251 13092650 -146507133 - Lx LINE L1 -3 6651 6249 1 684 2288 246 17 112 chr3 13092821 13093685 -146506098 + RMER17B LTR ERVK 1 782 -176 1 684 439 266 59 94 chr3 13093701 13093904 -146505879 + RMER13B LTR ERVK 704 899 -9 1 684 533 206 107 0 chr3 13094003 13094134 -146505649 - URR1A DNA MER1_type 0 226 82 1 684 360 88 0 0 chr3 13094234 13094291 -146505492 + (T)n Simple_repeat Simple_repeat 1 57 0 1 684 1441 251 121 11 chr3 13095674 13095744 -146504039 + Lx9 LINE L1 7064 7134 -510 1 684 1345 72 9 28 chr3 13095744 13095959 -146503824 + L1Md_F2 LINE L1 6372 6582 0 1 684 1441 251 121 11 chr3 13095959 13096409 -146503374 + Lx9 LINE L1 7135 7641 -3 1 684 186 43 0 0 chr3 13096549 13096572 -146503211 + (TA)n Simple_repeat Simple_repeat 1 23 0 1 684 187 281 85 34 chr3 13097064 13097123 -146502660 - MIRm SINE MIR -3 273 212 1 684 26 0 0 0 chr3 13097391 13097417 -146502366 + AT_rich Low_complexity Low_complexity 1 26 0 1 684 402 298 77 61 chr3 13097448 13097695 -146502088 - L1M2 LINE L1 -1371 4772 4522 1 684 195 275 71 14 chr3 13100051 13100121 -146499662 + MIRb SINE MIR 102 175 -93 1 684 810 86 0 0 chr3 13100190 13100306 -146499477 + (TA)n Simple_repeat Simple_repeat 1 116 0 1 684 3000 118 2 63 chr3 13100947 13101453 -146498330 - MT2C_Mm LTR ERVL 0 475 1 1 684 780 144 152 24 chr3 13101457 13101621 -146498162 - MERVL-int LTR ERVL -4 5481 5353 1 684 2957 146 24 12 chr3 13101650 13102143 -146497640 - MERVL-int LTR ERVL -276 5485 4987 1 684 662 190 67 27 chr3 13102145 13102295 -146497488 - MT2B2 LTR ERVL -224 360 210 1 684 11662 115 16 9 chr3 13102295 13104009 -146495774 - MERVL-int LTR ERVL -655 4830 3105 1 684 240 190 35 0 chr3 13104241 13104299 -146495484 + (TTTA)n Simple_repeat Simple_repeat 3 62 0 1 684 2849 122 20 13 chr3 13104382 13104829 -146494954 + L1_Mus4 LINE L1 6180 6629 -7 1 684 597 309 48 17 chr3 13105722 13106023 -146493760 - L1_Mur3 LINE L1 -678 5622 5282 1 85 33231 80 3 11 chr3 13106054 13110719 -146489064 - L1Md_F2 LINE L1 0 6582 1973 1 685 210 37 0 0 chr3 13110719 13110746 -146489037 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 685 33231 80 4 9 chr3 13110746 13112255 -146487528 - L1Md_F2 LINE L1 -3911 1972 459 1 685 601 298 12 24 chr3 13112269 13112520 -146487263 - L1_Mur3 LINE L1 -631 5249 5002 1 685 29510 100 15 29 chr3 13112606 13117933 -146481850 + L1Md_F2 LINE L1 331 5584 -299 1 685 6822 89 30 7 chr3 13117935 13118908 -146480875 + L1Md_F2 LINE L1 5587 6581 -1 1 685 515 217 188 0 chr3 13118910 13119048 -146480735 - MTD LTR MaLR -246 173 10 1 685 196 253 71 71 chr3 13119461 13119559 -146480224 + MIRb SINE MIR 96 193 -75 1 685 200 100 25 0 chr3 13122400 13122440 -146477343 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 685 225 204 19 0 chr3 13122760 13122814 -146476969 + A-rich Low_complexity Low_complexity 5 59 0 1 685 273 163 0 0 chr3 13122817 13122866 -146476917 + (CATATA)n Simple_repeat Simple_repeat 6 54 0 1 685 1526 158 49 33 chr3 13124197 13124518 -146475265 - Lx LINE L1 0 6566 6267 1 685 2558 102 0 14 chr3 13124516 13124868 -146474915 + Lx LINE L1 5530 5881 -2 1 685 1922 48 277 0 chr3 13124868 13125139 -146474644 + ORR1A1 LTR MaLR 1 346 0 1 685 2558 91 0 17 chr3 13125139 13125202 -146474581 + Lx LINE L1 5882 5939 -715 1 685 409 34 34 0 chr3 13125750 13125809 -146473974 + (GA)n Simple_repeat Simple_repeat 1 61 0 1 685 1332 223 92 22 chr3 13125974 13126332 -146473451 - ORR1C2 LTR MaLR -1 383 1 1 685 198 0 0 0 chr3 13126548 13126570 -146473213 + (A)n Simple_repeat Simple_repeat 1 22 0 1 685 21 0 0 0 chr3 13128140 13128161 -146471622 + AT_rich Low_complexity Low_complexity 1 21 0 1 685 4657 177 60 22 chr3 13128761 13129547 -146470236 + L1VL2 LINE L1 65 890 -5445 1 685 189 0 0 0 chr3 13129547 13129568 -146470215 + (CA)n Simple_repeat Simple_repeat 2 22 0 1 685 4657 107 30 1 chr3 13129568 13130176 -146469607 + L1VL2 LINE L1 891 1512 -2103 1 685 1134 189 135 43 chr3 13130176 13130480 -146469303 + IAPEY3_LTR LTR ERVK 1 332 0 1 685 389 252 41 75 chr3 13130482 13130628 -146469155 + IAPEY3-int LTR ERVK 3 143 -7537 1 685 640 218 71 0 chr3 13130679 13130876 -146468907 + IAPEY3-int LTR ERVK 535 745 -6935 1 685 886 74 16 64 chr3 13130892 13131080 -146468703 + GA-rich Low_complexity Low_complexity 1 179 0 1 685 316 167 0 0 chr3 13131080 13131128 -146468655 + polypurine Low_complexity Low_complexity 1 48 0 1 685 554 106 0 23 chr3 13131129 13131216 -146468567 + IAP-d-int LTR ERVK 93 177 -6365 1 685 751 197 33 0 chr3 13131210 13131362 -146468421 + IAP-d-int LTR ERVK 347 503 -6039 1 685 1445 146 105 0 chr3 13131342 13131589 -146468194 + IAP-d-int LTR ERVK 4983 5255 -1287 1 685 1768 122 50 0 chr3 13131601 13131922 -146467861 + IAPEY3-int LTR ERVK 6976 7338 -342 1 685 1364 210 55 15 chr3 13131939 13132282 -146467501 + IAP-d-int LTR ERVK 6125 6481 0 1 685 1132 223 94 34 chr3 13132282 13132579 -146467204 + RLTR46 LTR ERVK 1 315 -5 1 685 18908 174 49 23 chr3 13132587 13137298 -146462485 + Lx LINE L1 1807 6647 -7 1 685 21 0 0 0 chr3 13137305 13137326 -146462457 + AT_rich Low_complexity Low_complexity 1 21 0 1 685 216 0 0 0 chr3 13137934 13137958 -146461825 + (TG)n Simple_repeat Simple_repeat 2 25 0 1 685 584 348 68 4 chr3 13137988 13138236 -146461547 - B4 SINE B4 -4 288 25 1 685 183 184 0 0 chr3 13138602 13138640 -146461143 + (TA)n Simple_repeat Simple_repeat 2 39 0 1 685 197 333 71 0 chr3 13139846 13139930 -146459853 - MIR SINE MIR -163 99 10 1 685 2351 134 165 10 chr3 13140426 13141096 -146458687 - Lx2 LINE L1 0 6997 6224 1 685 251 309 44 35 chr3 13141667 13141781 -146458002 + RLTR24 LTR ERV1 340 454 -75 1 685 378 0 0 0 chr3 13142600 13142642 -146457141 + (TTA)n Simple_repeat Simple_repeat 2 43 0 1 685 4866 148 57 30 chr3 13142655 13143533 -146456250 - Lx3B LINE L1 -10 6963 6062 1 685 696 24 0 0 chr3 13143533 13143615 -146456168 + (TA)n Simple_repeat Simple_repeat 1 82 0 1 685 842 106 0 0 chr3 13143617 13143740 -146456043 - Lx3_Mus LINE L1 -1104 5905 5783 1 685 6324 88 3 19 chr3 13143774 13144881 -146454902 - L1Md_F2 LINE L1 -10 6572 5538 1 685 1244 157 0 0 chr3 13144884 13145082 -146454701 + L1_Mur1 LINE L1 5332 5529 -357 1 685 182 128 0 25 chr3 13145540 13145580 -146454203 + (TAAA)n Simple_repeat Simple_repeat 3 41 0 1 685 1738 271 48 9 chr3 13145937 13146017 -146453766 - Lx9 LINE L1 -7 7637 7563 1 685 2353 123 128 2 chr3 13146017 13146439 -146453344 + IAPLTR2_Mm LTR ERVK 1 475 0 1 685 1738 271 48 9 chr3 13146439 13146898 -146452885 - Lx9 LINE L1 -82 7562 7078 1 685 1307 241 75 36 chr3 13147103 13147464 -146452319 - ORR1C2 LTR MaLR -8 376 2 1 685 423 0 0 0 chr3 13147728 13147775 -146452008 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 685 7652 72 2 3 chr3 13147884 13149085 -146450698 - L1Md_F2 LINE L1 -12 6570 5372 1 685 2027 109 59 13 chr3 13149080 13149183 -146450600 + L1_Mm LINE L1 1671 1770 -4113 1 685 3020 84 16 23 chr3 13149183 13149619 -146450164 - L1Md_F2 LINE L1 -3 6579 6147 1 685 2027 109 59 13 chr3 13149619 13149887 -146449896 + L1_Mm LINE L1 1771 2059 -3824 1 685 364 257 83 35 chr3 13149886 13150031 -146449752 - L1Md_F LINE L1 -5790 729 578 1 685 358 294 28 51 chr3 13150064 13150279 -146449504 - L1VL1 LINE L1 -5934 488 279 1 685 5127 152 10 70 chr3 13150346 13151368 -146448415 - MTB-int LTR MaLR -138 960 1 1 685 2335 134 24 29 chr3 13151368 13151538 -146448245 - MTB LTR MaLR 0 400 223 1 685 4177 119 25 76 chr3 13151538 13152328 -146447455 - RMER17A LTR ERVK 0 751 2 1 685 2335 134 24 29 chr3 13152328 13152540 -146447243 - MTB LTR MaLR -178 222 20 1 685 529 197 60 8 chr3 13152728 13152861 -146446922 - URR1B DNA MER1_type 0 225 86 1 685 286 269 80 66 chr3 13152861 13152872 -146446911 + CYRA11_Mm Unknown Y-chromosome 214 317 -300 1 685 907 244 71 41 chr3 13153680 13154042 -146445741 - MTD LTR MaLR -13 406 14 1 685 22 88 0 0 chr3 13155293 13155350 -146444433 + AT_rich Low_complexity Low_complexity 1 57 0 1 685 380 132 66 0 chr3 13155436 13155512 -146444271 - L1_Mus2 LINE L1 0 6566 6486 1 685 368 88 18 0 chr3 13155542 13155599 -146444184 + (TTTTC)n Simple_repeat Simple_repeat 3 60 0 1 685 2037 176 91 109 chr3 13155605 13156142 -146443641 - Lx2 LINE L1 0 6997 6124 1 685 243 321 75 20 chr3 13156314 13156514 -146443269 - L1MA9 LINE L1 -146 6166 5956 1 685 201 167 48 10 chr3 13156687 13156790 -146442993 + (TA)n Simple_repeat Simple_repeat 2 108 0 1 685 540 0 0 0 chr3 13156966 13157026 -146442757 + (TTTTG)n Simple_repeat Simple_repeat 3 62 0 2 685 251 217 17 0 chr3 13159352 13159412 -146440371 + (CA)n Simple_repeat Simple_repeat 1 61 0 2 685 243 260 0 0 chr3 13160125 13160175 -146439608 - PB1D7 SINE Alu -59 61 12 2 685 297 289 13 0 chr3 13161135 13161211 -146438572 - ID4 SINE ID -5 78 2 2 685 472 191 130 0 chr3 13161781 13161896 -146437887 - Lx9 LINE L1 -371 7273 7144 2 685 1215 286 24 27 chr3 13161910 13162283 -146437500 - Lx6 LINE L1 -26 7434 7063 2 685 2034 290 114 17 chr3 13162270 13163148 -146436635 - Lx9 LINE L1 -483 7161 6072 2 685 253 331 23 55 chr3 13163443 13163571 -146436212 + ORR1E LTR MaLR 71 194 -165 2 685 358 310 76 14 chr3 13163777 13163921 -146435862 - MTD LTR MaLR 0 419 267 2 685 662 178 17 0 chr3 13164005 13164123 -146435660 - Lx5 LINE L1 -625 6425 6306 2 685 26 64 0 0 chr3 13165119 13165166 -146434617 + AT_rich Low_complexity Low_complexity 1 47 0 2 685 549 55 0 0 chr3 13165448 13165521 -146434262 + (TC)n Simple_repeat Simple_repeat 2 74 0 2 685 5627 103 100 11 chr3 13167482 13168059 -146431724 - L1_Mur1 LINE L1 -682 5204 4636 2 685 180 0 0 0 chr3 13168059 13168079 -146431704 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 2 685 5627 103 100 11 chr3 13168079 13168427 -146431356 - L1_Mur1 LINE L1 -1251 4635 4196 2 685 1674 51 0 75 chr3 13168429 13168682 -146431101 + LTRIS2 LTR ERV1 5 238 -326 2 685 13266 62 0 1 chr3 13168682 13170381 -146429402 + L1Md_F2 LINE L1 3889 5586 -297 2 685 8120 41 3 0 chr3 13170381 13171362 -146428421 + L1Md_F2 LINE L1 5587 6570 -12 2 685 1288 254 14 21 chr3 13171362 13171648 -146428135 + MTC LTR MaLR 84 367 -54 2 685 2551 59 9 0 chr3 13171670 13172009 -146427774 + LTRIS2 LTR ERV1 223 564 0 2 685 2157 69 3 0 chr3 13172009 13172298 -146427485 - L1_Mur1 LINE L1 -1687 4199 3910 2 685 8829 111 36 25 chr3 13172297 13174097 -146425686 + Lx3_Mus LINE L1 5199 7009 0 2 685 21 57 0 0 chr3 13174097 13174132 -146425651 + AT_rich Low_complexity Low_complexity 1 35 0 2 685 753 114 0 0 chr3 13176066 13176180 -146423603 + (TG)n Simple_repeat Simple_repeat 2 115 0 2 685 210 329 68 0 chr3 13176225 13176298 -146423485 - B2_Mm2 SINE B2 -117 78 1 2 685 224 330 114 0 chr3 13176602 13176690 -146423093 + PB1D10 SINE Alu 12 109 -8 2 685 21 0 0 0 chr3 13177793 13177814 -146421969 + AT_rich Low_complexity Low_complexity 1 21 0 2 685 220 182 18 18 chr3 13178041 13178097 -146421686 + (TA)n Simple_repeat Simple_repeat 2 57 0 2 685 27 29 0 0 chr3 13178376 13178410 -146421373 + AT_rich Low_complexity Low_complexity 1 34 0 2 685 974 152 22 0 chr3 13179129 13179313 -146420470 - Lx2 LINE L1 -1 6996 6809 2 685 3768 219 58 112 chr3 13180158 13180797 -146418986 + MTC-int LTR MaLR 148 712 -546 2 685 501 17 0 0 chr3 13180797 13180855 -146418928 + (GA)n Simple_repeat Simple_repeat 2 59 0 2 685 3768 219 58 112 chr3 13180855 13181389 -146418394 + MTC-int LTR MaLR 713 1258 0 2 685 1386 194 67 8 chr3 13181389 13181695 -146418088 + MTC LTR MaLR 1 319 -81 2 685 1181 303 57 17 chr3 13181871 13182220 -146417563 - MTD LTR MaLR 0 419 57 2 685 986 188 52 0 chr3 13182916 13183129 -146416654 - URR1B DNA MER1_type 0 225 2 2 685 7502 70 8 2 chr3 13183149 13184312 -146415471 + L1Md_F2 LINE L1 5393 6562 -20 2 685 493 283 29 35 chr3 13185318 13185490 -146414293 - RMER5 LTR ERV1 -11 523 353 2 685 6760 96 36 3 chr3 13185550 13185647 -146414136 - L1Md_F2 LINE L1 0 6582 6477 2 685 450 0 0 0 chr3 13185647 13185697 -146414086 + (CA)n Simple_repeat Simple_repeat 2 51 0 2 685 27523 116 8 17 chr3 13185697 13191556 -146408227 - L1Md_F2 LINE L1 -106 6476 812 2 685 238 292 62 0 chr3 13191923 13191988 -146407795 + BC1_Mm scRNA scRNA 13 81 -71 2 685 1619 167 75 32 chr3 13192944 13193057 -146406726 - L1_Mur2 LINE L1 -356 5521 5417 2 685 1761 176 31 6 chr3 13193057 13193378 -146406405 - ORR1A4 LTR MaLR 0 329 1 2 685 1619 167 75 32 chr3 13193378 13193611 -146406172 - L1_Mur2 LINE L1 -461 5416 5160 2 685 1779 186 80 14 chr3 13193611 13193976 -146405807 + Lx4B LINE L1 6670 7058 0 2 685 944 148 6 0 chr3 13193976 13194145 -146405638 + GA-rich Low_complexity Low_complexity 3 172 0 2 685 968 144 0 0 chr3 13194218 13194364 -146405419 - B1_Mus2 SINE Alu 0 147 2 2 685 428 136 8 41 chr3 13195553 13195676 -146404107 + (CATA)n Simple_repeat Simple_repeat 2 120 0 2 685 315 240 19 9 chr3 13195692 13195797 -146403986 + (TAGA)n Simple_repeat Simple_repeat 4 109 0 2 685 220 59 0 105 chr3 13196362 13196419 -146403364 + (TTTG)n Simple_repeat Simple_repeat 2 52 0 2 685 840 67 8 8 chr3 13196431 13196551 -146403232 - B1_Mm SINE Alu 0 147 28 2 685 482 346 0 35 chr3 13197726 13197867 -146401916 - B3A SINE B2 -15 183 48 2 685 684 265 41 0 chr3 13198419 13198585 -146401198 + ORR1D1 LTR MaLR 1 173 -201 2 685 631 174 8 24 chr3 13198585 13198709 -146401074 + ORR1B1 LTR MaLR 1 122 -272 2 685 856 293 46 111 chr3 13198764 13199332 -146400451 - RLTR12B LTR ERVK -27 500 1 2 685 1169 203 77 4 chr3 13199337 13199584 -146400199 + ORR1B1 LTR MaLR 130 394 0 2 685 722 228 87 0 chr3 13199584 13199768 -146400015 + ORR1D1 LTR MaLR 169 368 -6 2 685 4851 83 7 0 chr3 13200117 13200790 -146398993 - L1_Mus1 LINE L1 -1 6566 5889 2 685 28571 146 24 35 chr3 13200790 13206578 -146393205 - L1VL2 LINE L1 -85 5798 261 2 685 180 235 119 36 chr3 13206661 13206745 -146393038 + L4 LINE RTE 815 905 -1124 2 685 410 141 0 0 chr3 13206983 13207061 -146392722 - L1Md_F2 LINE L1 -3 6579 6502 2 685 806 276 75 0 chr3 13207086 13207285 -146392498 + MTD LTR MaLR 7 220 -199 2 685 1565 230 57 61 chr3 13207292 13207769 -146392014 + RMER6C LTR ERVK 216 690 0 2 685 727 233 117 0 chr3 13207769 13207948 -146391835 + MTD LTR MaLR 211 410 -9 2 685 2848 264 80 113 chr3 13207961 13208597 -146391186 + MTD-int LTR MaLR 6 701 -557 2 685 1224 62 5 97 chr3 13208597 13208793 -146390990 + L1_Mus2 LINE L1 6389 6566 0 2 685 2848 264 80 113 chr3 13208793 13209451 -146390332 + MTD-int LTR MaLR 702 1258 0 2 685 561 223 129 7 chr3 13209451 13209591 -146390192 + MTD LTR MaLR 1 157 -262 2 685 1815 251 76 0 chr3 13210453 13210927 -146388856 - RLTR28 LTR ERVL -14 510 1 2 685 705 194 77 6 chr3 13211331 13211487 -146388296 - B2_Mm2 SINE B2 -27 168 2 2 685 489 336 54 90 chr3 13214203 13214939 -146384844 - RodERV21-int LTR ERV1 -2773 2218 1509 2 685 1864 207 83 33 chr3 13214977 13215159 -146384624 + Lx7 LINE L1 6758 6939 -757 2 685 3460 42 28 9 chr3 13215159 13215587 -146384196 - RLTR10C LTR ERVK 0 436 1 2 685 1864 207 83 33 chr3 13215587 13215884 -146383899 + Lx7 LINE L1 6940 7261 -435 2 685 2599 299 62 75 chr3 13215897 13216476 -146383307 - Lx5 LINE L1 -18 7032 6446 2 685 474 18 0 0 chr3 13216476 13216531 -146383252 + (TCTA)n Simple_repeat Simple_repeat 4 58 0 2 685 2599 299 62 75 chr3 13216531 13217128 -146382655 - Lx5 LINE L1 -605 6445 5871 2 685 1085 255 70 52 chr3 13217126 13217569 -146382214 + Lx7 LINE L1 7246 7696 0 2 685 369 0 0 0 chr3 13217595 13217636 -146382147 + (TAAA)n Simple_repeat Simple_repeat 3 43 0 2 685 1050 104 7 0 chr3 13217636 13217780 -146382003 + B1_Mus1 SINE Alu 2 146 -2 2 685 248 250 12 59 chr3 13217792 13217877 -146381906 - RMER5 LTR ERV1 -433 101 21 2 685 277 204 0 0 chr3 13218031 13218080 -146381703 + MT2A LTR ERVL 411 459 -74 2 685 35 24 0 0 chr3 13218166 13218208 -146381575 + AT_rich Low_complexity Low_complexity 1 42 0 2 685 29021 18 2 6 chr3 13219349 13226369 -146373414 - L1Md_A LINE L1 -1 6581 1 2 685 411 366 30 45 chr3 13226945 13227145 -146372638 + B3A SINE B2 2 198 0 2 685 25 65 0 0 chr3 13227339 13227385 -146372398 + AT_rich Low_complexity Low_complexity 1 46 0 2 685 1121 308 21 43 chr3 13228324 13228603 -146371180 - MuLV-int LTR ERV1 -2354 5252 4982 2 685 3513 221 51 72 chr3 13228603 13229581 -146370202 + RMER17B LTR ERVK 1 958 0 2 685 1121 308 21 43 chr3 13229581 13229721 -146370062 - MuLV-int LTR ERV1 -2625 4981 4842 2 685 3399 60 15 15 chr3 13229774 13230232 -146369551 - L1Md_F3 LINE L1 0 6584 6127 2 685 2651 183 44 11 chr3 13230350 13230875 -146368908 - RMER13B LTR ERVK -366 542 1 2 685 2083 130 3 0 chr3 13230963 13231271 -146368512 + RLTR27 LTR ERVK 1 309 0 2 685 479 327 64 19 chr3 13231405 13231670 -146368113 - MuLV-int LTR ERV1 -3309 4297 4000 2 685 371 267 108 0 chr3 13231705 13231825 -146367958 + RMER2 LTR ERV1 435 567 0 2 685 368 364 101 20 chr3 13232059 13232258 -146367525 - ORR1E LTR MaLR -144 215 1 2 685 618 275 100 5 chr3 13232341 13232531 -146367252 - B3 SINE B2 -4 212 5 2 685 7610 172 45 58 chr3 13232950 13234273 -146365510 + RLTR21 LTR ERVK 1 1312 -260 2 685 342 0 0 0 chr3 13234273 13234311 -146365472 + (TG)n Simple_repeat Simple_repeat 1 38 0 2 685 7610 172 45 58 chr3 13234311 13234571 -146365212 + RLTR21 LTR ERVK 1313 1564 -8 2 685 25 0 0 0 chr3 13235099 13235124 -146364659 + AT_rich Low_complexity Low_complexity 1 25 0 2 685 21 36 0 0 chr3 13235262 13235290 -146364493 + AT_rich Low_complexity Low_complexity 1 28 0 2 685 3572 75 2 2 chr3 13235429 13235897 -146363886 - L1_Mus1 LINE L1 -1 6566 6099 2 685 27 49 0 0 chr3 13235919 13235960 -146363823 + AT_rich Low_complexity Low_complexity 1 41 0 2 685 355 301 48 0 chr3 13235988 13236091 -146363692 + B1F2 SINE Alu 41 148 -1 2 685 378 0 0 0 chr3 13236356 13236398 -146363385 + (TA)n Simple_repeat Simple_repeat 1 42 0 2 685 22 0 0 0 chr3 13237406 13237428 -146362355 + AT_rich Low_complexity Low_complexity 1 22 0 2 686 217 241 0 18 chr3 13240790 13240821 -146358962 + (CATA)n Simple_repeat Simple_repeat 3 33 0 2 686 3133 70 163 2 chr3 13240821 13241262 -146358521 - RLTR1B LTR ERV1 0 512 1 2 686 217 241 0 18 chr3 13241262 13241285 -146358498 + (CATA)n Simple_repeat Simple_repeat 2 24 0 2 686 1159 206 21 145 chr3 13241416 13241624 -146358159 - RMER17C LTR ERVK 0 410 229 2 686 318 26 0 0 chr3 13241624 13241663 -146358120 + (TG)n Simple_repeat Simple_repeat 2 40 0 2 686 378 0 0 0 chr3 13241663 13241704 -146358079 + (TA)n Simple_repeat Simple_repeat 1 42 0 2 686 1159 206 21 145 chr3 13241704 13241914 -146357869 - RMER17C LTR ERVK -182 228 44 2 686 551 170 43 0 chr3 13241937 13242031 -146357752 - RMER17C-int LTR ERVK 0 3238 3141 2 686 1881 217 102 68 chr3 13242026 13242699 -146357084 - RMER17C-int LTR ERVK -1536 1702 1007 2 686 1504 226 80 80 chr3 13242748 13243320 -146356463 - RMER17C-int LTR ERVK -2544 694 123 2 686 438 20 0 0 chr3 13243350 13243401 -146356382 + (CA)n Simple_repeat Simple_repeat 2 52 0 2 686 209 39 0 0 chr3 13243401 13243427 -146356356 + (CAGAGA)n Simple_repeat Simple_repeat 5 30 0 2 686 828 155 0 0 chr3 13243430 13243591 -146356192 + GA-rich Low_complexity Low_complexity 2 162 0 2 686 504 264 95 39 chr3 13243623 13243899 -146355884 - RMER17C LTR ERVK -3 407 1 2 686 434 329 75 59 chr3 13243900 13243926 -146355857 - MER67D LTR ERV1 -29 485 461 2 686 1182 48 7 0 chr3 13243926 13244073 -146355710 + B1_Mus1 SINE Alu 1 148 0 2 686 434 329 75 59 chr3 13244073 13244485 -146355298 - MER67D LTR ERV1 -54 460 40 2 686 182 340 0 54 chr3 13244573 13244629 -146355154 + MIR SINE MIR 25 77 -185 3 686 323 309 91 71 chr3 13244744 13244938 -146354845 + B3A SINE B2 19 216 0 3 686 378 0 0 0 chr3 13245343 13245385 -146354398 + (CCCCAA)n Simple_repeat Simple_repeat 1 42 0 3 686 510 17 0 0 chr3 13245942 13246001 -146353782 + (CA)n Simple_repeat Simple_repeat 2 60 0 3 686 637 221 87 14 chr3 13246238 13246376 -146353407 + B1_Mus1 SINE Alu 1 148 0 3 686 263 191 0 14 chr3 13246377 13246446 -146353337 + GA-rich Low_complexity Low_complexity 3 70 0 3 686 1166 118 6 6 chr3 13246854 13247025 -146352758 + Lx LINE L1 6343 6513 -141 3 686 186 43 0 0 chr3 13247339 13247362 -146352421 + (CCA)n Simple_repeat Simple_repeat 2 24 0 3 686 493 219 33 16 chr3 13247484 13247605 -146352178 + MTD LTR MaLR 27 149 -270 3 686 886 236 139 4 chr3 13247683 13247921 -146351862 + MTD LTR MaLR 150 419 0 3 686 369 244 11 69 chr3 13247935 13248124 -146351659 + CT-rich Low_complexity Low_complexity 3 180 0 3 686 281 334 9 27 chr3 13248159 13248543 -146351240 + CT-rich Low_complexity Low_complexity 1 377 0 3 686 189 0 0 0 chr3 13248590 13248611 -146351172 + (CCCCCA)n Simple_repeat Simple_repeat 4 24 0 3 686 204 298 0 0 chr3 13248665 13248722 -146351061 + CT-rich Low_complexity Low_complexity 3 59 0 3 686 763 318 53 10 chr3 13248746 13249048 -146350735 - Lx6 LINE L1 -31 7429 7115 3 686 460 227 18 18 chr3 13249045 13249157 -146350626 + Lx5 LINE L1 6491 6602 -448 3 686 227 312 12 66 chr3 13249449 13249831 -146349952 + CT-rich Low_complexity Low_complexity 1 361 0 3 686 2577 132 5 5 chr3 13250629 13251032 -146348751 - RLTR9D LTR ERVK 0 403 1 3 686 421 355 53 29 chr3 13251252 13251423 -146348360 + ID_B1 SINE B4 39 213 -11 3 686 1200 56 0 0 chr3 13252681 13252825 -146346958 + B1_Mm SINE Alu 2 145 -2 3 686 318 50 0 0 chr3 13252825 13252865 -146346918 + (TAA)n Simple_repeat Simple_repeat 2 41 0 3 686 27 49 0 0 chr3 13253415 13253456 -146346327 + AT_rich Low_complexity Low_complexity 1 41 0 3 686 273 75 0 0 chr3 13253930 13253970 -146345813 + (CA)n Simple_repeat Simple_repeat 1 40 0 3 686 184 246 55 55 chr3 13253983 13254056 -146345727 + L3 LINE CR1 1261 1333 -3156 3 686 448 239 33 0 chr3 13254255 13254347 -146345436 - PB1D7 SINE Alu -2 118 24 3 686 22 0 0 0 chr3 13254402 13254424 -146345359 + AT_rich Low_complexity Low_complexity 1 22 0 3 686 635 228 120 0 chr3 13255168 13255352 -146344431 + B3 SINE B2 1 206 -10 3 686 1897 81 0 4 chr3 13255647 13255907 -146343876 + L1Md_F2 LINE L1 6324 6582 0 3 686 599 79 0 22 chr3 13255982 13256073 -146343710 + (TTTC)n Simple_repeat Simple_repeat 2 90 0 3 686 1120 54 7 13 chr3 13256074 13256223 -146343560 - B1_Mus1 SINE Alu 0 148 1 3 686 37 23 0 0 chr3 13256241 13256285 -146343498 + AT_rich Low_complexity Low_complexity 1 44 0 3 686 273 234 37 55 chr3 13257809 13257972 -146341811 + CT-rich Low_complexity Low_complexity 1 160 0 3 686 205 157 28 28 chr3 13258367 13258439 -146341344 + (CAGAGA)n Simple_repeat Simple_repeat 4 75 0 3 686 28 0 0 0 chr3 13259635 13259663 -146340120 + AT_rich Low_complexity Low_complexity 1 28 0 3 686 33304 74 9 19 chr3 13259781 13265062 -146334721 + L1Md_F2 LINE L1 419 5589 -297 3 686 7960 50 2 2 chr3 13265062 13266042 -146333741 + L1Md_F2 LINE L1 5590 6569 -16 3 686 38 22 0 0 chr3 13266042 13266087 -146333696 + AT_rich Low_complexity Low_complexity 1 45 0 3 686 338 243 56 28 chr3 13266172 13266316 -146333467 - L1M2 LINE L1 -1596 4547 4400 3 686 192 111 0 0 chr3 13269172 13269208 -146330575 + (TTTTTG)n Simple_repeat Simple_repeat 2 37 0 3 686 665 296 45 104 chr3 13269583 13269986 -146329797 + MTE2a LTR MaLR 1 379 0 3 686 6927 172 33 10 chr3 13272008 13273297 -146326486 - Lx4A LINE L1 -3 7055 5737 3 686 221 98 24 0 chr3 13273305 13273346 -146326437 + (TTTTA)n Simple_repeat Simple_repeat 3 44 0 3 686 8372 136 30 20 chr3 13273347 13274813 -146324970 - Lx2 LINE L1 0 6997 5519 3 686 1771 140 10 17 chr3 13274814 13275111 -146324672 - L1_Mur2 LINE L1 -143 5734 5440 3 686 3631 142 21 3 chr3 13275107 13275729 -146324054 + L1_Mur2 LINE L1 4808 5440 -437 3 686 1114 63 21 0 chr3 13276829 13276972 -146322811 + B1_Mm SINE Alu 1 146 -1 3 686 969 202 62 9 chr3 13277732 13277942 -146321841 + MTD LTR MaLR 5 225 -194 3 686 2172 151 47 5 chr3 13278663 13279049 -146320734 - RLTR9D LTR ERVK -1 402 1 3 686 24703 137 14 19 chr3 13279581 13284309 -146315474 + L1Md_F LINE L1 656 5363 -520 3 686 3885 92 0 0 chr3 13284310 13284821 -146314962 + L1_Mus1 LINE L1 6053 6563 -4 3 686 23 0 0 0 chr3 13284857 13284880 -146314903 + AT_rich Low_complexity Low_complexity 1 23 0 3 686 266 288 13 52 chr3 13285554 13285631 -146314152 + B3A SINE B2 65 138 -60 3 686 3097 178 16 21 chr3 13285707 13286320 -146313463 + L1_Mur2 LINE L1 4999 5608 -269 3 686 995 256 106 9 chr3 13286775 13287125 -146312658 - ORR1C2 LTR MaLR 0 384 1 3 686 2598 28 71 9 chr3 13289445 13289771 -146310012 - ORR1A0 LTR MaLR 0 346 1 3 686 839 337 109 30 chr3 13290472 13291032 -146308751 + MTE-int LTR MaLR 2 605 -975 3 686 1636 214 19 44 chr3 13291029 13291067 -146308716 - ORR1B2 LTR MaLR -9 358 321 3 686 891 112 117 6 chr3 13291067 13291229 -146308554 + Lx3_Mus LINE L1 6822 7001 -8 3 686 1636 214 19 44 chr3 13291229 13291557 -146308226 - ORR1B2 LTR MaLR -47 320 1 3 686 2422 36 30 3 chr3 13291800 13292140 -146307643 + L1Md_F3 LINE L1 6258 6584 0 3 686 19942 22 6 0 chr3 13292151 13295164 -146304619 - L1Md_T LINE L1 0 6582 3549 3 686 5816 24 6 0 chr3 13295159 13295863 -146303920 + L1Md_T LINE L1 2851 3558 -2325 3 686 348 83 0 0 chr3 13296134 13296182 -146303601 + (A)n Simple_repeat Simple_repeat 1 48 0 3 686 896 358 210 9 chr3 13296200 13296834 -146302949 + MTE-int LTR MaLR 785 1545 -35 3 686 183 162 0 0 chr3 13298222 13298259 -146301524 + (CA)n Simple_repeat Simple_repeat 1 37 0 3 686 620 130 16 0 chr3 13298592 13298715 -146301068 + (CATATA)n Simple_repeat Simple_repeat 5 129 0 3 686 645 246 58 53 chr3 13298861 13299050 -146300733 - RLTR20B3 LTR ERVK -372 205 16 3 686 602 289 37 5 chr3 13299050 13299241 -146300542 + Lx6 LINE L1 7252 7448 -12 3 686 23 33 0 0 chr3 13299260 13299290 -146300493 + AT_rich Low_complexity Low_complexity 1 30 0 3 686 996 110 18 0 chr3 13299383 13299547 -146300236 + L1_Mus3 LINE L1 6472 6638 0 3 686 21 36 0 0 chr3 13300231 13300259 -146299524 + AT_rich Low_complexity Low_complexity 1 28 0 3 686 638 58 39 0 chr3 13300752 13300856 -146298927 + (TA)n Simple_repeat Simple_repeat 1 108 0 3 686 357 24 0 0 chr3 13301184 13301226 -146298557 + (CA)n Simple_repeat Simple_repeat 1 42 0 3 686 183 209 22 65 chr3 13302083 13302129 -146297654 + L3 LINE CR1 3859 3902 -587 3 686 15596 193 20 153 chr3 13302904 13304123 -146295660 + L1_Mus2 LINE L1 1645 2860 -3017 3 686 1016 111 0 6 chr3 13304123 13304286 -146295497 + (GAAA)n Simple_repeat Simple_repeat 3 164 0 3 686 15596 193 20 153 chr3 13304286 13305768 -146294015 + L1_Mus2 LINE L1 2861 3839 -2038 3 686 464 110 12 0 chr3 13305768 13305850 -146293933 + L1_Mus2 LINE L1 6483 6565 -1 3 686 15596 193 20 153 chr3 13305850 13305985 -146293798 + L1_Mus2 LINE L1 3840 3847 -2030 3 686 627 138 0 0 chr3 13305985 13306079 -146293704 + 4.5SRNA scRNA scRNA 1 94 0 3 686 15596 168 16 127 chr3 13306079 13308253 -146291530 + L1_Mus2 LINE L1 3848 6012 -554 3 686 1825 176 43 0 chr3 13308253 13308599 -146291184 + Lx2 LINE L1 6635 6995 -2 3 686 3294 68 0 20 chr3 13308599 13308619 -146291164 + L1_Mus2 LINE L1 6013 6027 -539 3 686 2732 82 3 3 chr3 13308706 13309075 -146290708 + MTA_Mm LTR MaLR 1 369 -27 3 686 930 309 119 28 chr3 13310583 13311112 -146288671 + Lx8 LINE L1 6552 7128 -345 3 686 288 222 11 43 chr3 13311112 13311206 -146288577 + GA-rich Low_complexity Low_complexity 4 94 0 3 686 1281 245 89 14 chr3 13311848 13312196 -146287587 - ORR1C2 LTR MaLR 0 384 11 3 686 403 360 141 8 chr3 13312879 13313249 -146286534 + MamRep605 Unknown Unknown 261 679 -197 3 686 4530 63 2 0 chr3 13315295 13315867 -146283916 + L1Md_F2 LINE L1 5998 6570 -12 3 686 305 221 10 78 chr3 13315917 13316020 -146283763 - L1MCc LINE L1 -5141 1896 1801 3 686 405 332 80 46 chr3 13316193 13316317 -146283466 - Lx7 LINE L1 -812 6884 6771 3 686 4321 82 15 2 chr3 13316317 13316902 -146282881 + L1_Mus1 LINE L1 5973 6565 -2 3 686 405 332 80 46 chr3 13316902 13317014 -146282769 - Lx7 LINE L1 -926 6770 6640 3 686 189 0 0 0 chr3 13317015 13317036 -146282747 + (TAAA)n Simple_repeat Simple_repeat 4 24 0 3 686 487 224 12 0 chr3 13317054 13317139 -146282644 + Lx7 LINE L1 6883 6968 -728 3 686 909 176 138 0 chr3 13317153 13317341 -146282442 + URR1A DNA MER1_type 8 221 -5 3 686 356 299 13 31 chr3 13317359 13317518 -146282265 + Lx7 LINE L1 6999 7154 -542 3 686 261 299 0 0 chr3 13317527 13317622 -146282161 + CT-rich Low_complexity Low_complexity 20 114 0 3 686 1464 0 11 6 chr3 13317622 13317799 -146281984 + (TTCTCC)n Simple_repeat Simple_repeat 1 178 0 3 686 261 299 0 0 chr3 13317799 13317810 -146281973 + polypyrimidine Low_complexity Low_complexity 9 19 0 3 686 916 130 11 0 chr3 13317811 13317899 -146281884 + (TCC)n Simple_repeat Simple_repeat 2 90 0 3 686 1330 45 17 0 chr3 13317899 13318076 -146281707 + (TTCTCC)n Simple_repeat Simple_repeat 1 180 0 3 686 1139 110 4 7 chr3 13318076 13318353 -146281430 + (TCC)n Simple_repeat Simple_repeat 1 275 0 3 686 297 0 0 0 chr3 13318361 13318394 -146281389 + (CTG)n Simple_repeat Simple_repeat 1 33 0 3 686 203 183 34 68 chr3 13318546 13318634 -146281149 + T-rich Low_complexity Low_complexity 6 90 0 3 686 378 0 0 0 chr3 13318689 13318731 -146281052 + (TG)n Simple_repeat Simple_repeat 1 42 0 3 686 246 270 0 39 chr3 13318735 13318812 -146280971 + GA-rich Low_complexity Low_complexity 2 75 0 3 686 231 146 0 0 chr3 13318813 13318854 -146280929 + (GGA)n Simple_repeat Simple_repeat 3 43 0 3 686 2038 207 100 25 chr3 13319083 13319563 -146280220 + RMER20A LTR ERVK 1 516 0 3 686 317 341 140 54 chr3 13319563 13319601 -146280182 - L1MCc LINE L1 -5143 1280 1232 3 686 507 17 0 0 chr3 13319601 13319661 -146280122 + (TG)n Simple_repeat Simple_repeat 2 61 0 3 686 317 341 140 54 chr3 13319661 13319901 -146279882 - L1MCc LINE L1 -5192 1231 978 3 686 288 70 0 0 chr3 13319968 13320011 -146279772 + (TATG)n Simple_repeat Simple_repeat 2 44 0 3 686 1248 85 0 53 chr3 13320013 13320200 -146279583 - B2_Mm2 SINE B2 -18 177 1 3 686 258 32 0 0 chr3 13320205 13320236 -146279547 + (T)n Simple_repeat Simple_repeat 1 31 0 3 686 242 273 10 83 chr3 13320894 13320990 -146278793 - Charlie10 DNA MER1_type -1771 1051 963 4 686 646 199 49 7 chr3 13322094 13322236 -146277547 + B1_Mur3 SINE Alu 2 149 0 4 686 432 0 0 0 chr3 13323301 13323349 -146276434 + (TA)n Simple_repeat Simple_repeat 1 48 0 4 686 261 0 0 0 chr3 13323349 13323377 -146276406 + (CA)n Simple_repeat Simple_repeat 2 30 0 4 686 7076 156 16 2 chr3 13323456 13325514 -146274269 + Lx2 LINE L1 4552 6643 -354 4 686 1079 144 52 0 chr3 13325514 13325708 -146274075 + Lx2 LINE L1 6775 6978 -19 4 686 3777 133 50 17 chr3 13325739 13326395 -146273388 - Lx LINE L1 -7 6647 5970 4 686 25 51 0 0 chr3 13326475 13326514 -146273269 + AT_rich Low_complexity Low_complexity 1 39 0 4 686 304 268 118 31 chr3 13326764 13326891 -146272892 + B1F SINE Alu 5 142 -7 4 686 244 405 46 70 chr3 13329010 13329294 -146270489 + MLT2B5 LTR ERVL 85 361 -240 4 686 656 335 90 54 chr3 13329543 13329966 -146269817 - MER67D LTR ERV1 -76 438 1 4 686 726 259 59 5 chr3 13330211 13330413 -146269370 + MER82 DNA MER2_type 30 242 -411 4 686 32 43 0 0 chr3 13330709 13330755 -146269028 + AT_rich Low_complexity Low_complexity 1 46 0 4 686 516 300 87 15 chr3 13330757 13331107 -146268676 + MTD LTR MaLR 1 405 -14 4 686 915 293 23 13 chr3 13331242 13331543 -146268240 + L1_Mur3 LINE L1 4679 4982 -898 4 686 383 304 24 73 chr3 13331824 13331948 -146267835 + B1F1 SINE Alu 6 123 -26 4 686 229 292 14 0 chr3 13331951 13332023 -146267760 + GA-rich Low_complexity Low_complexity 2 74 0 4 686 21 71 0 0 chr3 13332536 13332578 -146267205 + AT_rich Low_complexity Low_complexity 1 42 0 4 686 995 226 26 36 chr3 13333066 13333374 -146266409 + L1VL4 LINE L1 521 825 -5510 4 686 9014 164 24 32 chr3 13333371 13335235 -146264548 - L1_Mm LINE L1 -1007 4876 3027 4 686 1825 274 31 32 chr3 13335235 13335823 -146263960 + MuRRS4-int LTR ERV1 3685 4271 -792 4 686 950 229 31 0 chr3 13335814 13336041 -146263742 + MuRRS4-int LTR ERV1 4788 5021 -42 4 686 2475 112 117 43 chr3 13336042 13336488 -146263295 + LTRIS2 LTR ERV1 1 479 -85 4 686 180 0 0 0 chr3 13336489 13336509 -146263274 + (A)n Simple_repeat Simple_repeat 1 20 0 4 686 5339 209 161 27 chr3 13336509 13336841 -146262942 - L1VL4 LINE L1 -2841 3036 2706 4 686 265 24 48 0 chr3 13336841 13336883 -146262900 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 4 686 6353 180 120 27 chr3 13336883 13337093 -146262690 - L1VL4 LINE L1 -1575 2339 2276 4 686 224 59 29 0 chr3 13337093 13337127 -146262656 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 4 686 6353 137 28 24 chr3 13337127 13338845 -146260938 - L1VL4 LINE L1 -1639 2275 548 4 686 32 81 0 0 chr3 13340447 13340521 -146259262 + AT_rich Low_complexity Low_complexity 1 74 0 4 686 221 71 71 0 chr3 13340531 13340573 -146259210 + (TATATG)n Simple_repeat Simple_repeat 3 47 0 4 686 32116 82 1 7 chr3 13340814 13345923 -146253860 + L1Md_F2 LINE L1 413 5589 -297 4 686 7849 52 3 3 chr3 13345923 13346917 -146252866 + L1Md_F2 LINE L1 5590 6583 -2 4 686 297 322 17 34 chr3 13347396 13347515 -146252268 + PB1D10 SINE Alu 1 117 0 4 686 327 113 0 0 chr3 13347738 13347791 -146251992 + (GA)n Simple_repeat Simple_repeat 2 54 0 4 686 875 304 51 11 chr3 13347876 13348232 -146251551 + ORR1D2 LTR MaLR 1 370 0 4 686 428 291 99 68 chr3 13348530 13348751 -146251032 - MLT1A0 LTR MaLR -64 301 74 4 686 4428 266 44 10 chr3 13348767 13349953 -146249830 - Lx5 LINE L1 -8 7042 5788 4 686 3395 216 40 39 chr3 13349979 13351342 -146248441 - Lx5 LINE L1 -8 7042 5521 4 686 1004 224 38 8 chr3 13351341 13351606 -146248177 - Lx5 LINE L1 -5918 1168 896 4 686 357 333 74 0 chr3 13352383 13352545 -146247238 + MLT1E2 LTR MaLR 27 200 -427 4 686 324 0 0 0 chr3 13352571 13352607 -146247176 + (A)n Simple_repeat Simple_repeat 1 36 0 4 686 36333 34 1 0 chr3 13352627 13357772 -146242011 + L1Md_T LINE L1 439 5585 -298 4 686 8431 35 0 0 chr3 13357773 13358769 -146241014 + L1Md_T LINE L1 5587 6582 0 4 686 296 344 17 49 chr3 13358927 13359076 -146240707 + MLT1E2 LTR MaLR 422 586 -38 4 686 23 0 0 0 chr3 13359204 13359227 -146240556 + AT_rich Low_complexity Low_complexity 1 23 0 4 686 432 0 0 0 chr3 13359301 13359349 -146240434 + (TA)n Simple_repeat Simple_repeat 2 49 0 4 686 188 111 28 0 chr3 13359747 13359783 -146240000 + (ATTAG)n Simple_repeat Simple_repeat 3 39 0 4 686 2799 168 14 6 chr3 13360384 13360887 -146238896 + Lx2B LINE L1 6489 6995 -5 4 686 22 35 0 0 chr3 13361167 13361196 -146238587 + AT_rich Low_complexity Low_complexity 1 29 0 4 686 410 247 22 3 chr3 13361232 13361341 -146238442 + B3 SINE B2 11 120 -78 4 686 3590 26 0 0 chr3 13361449 13361870 -146237913 - L1Md_T LINE L1 -1 6581 6161 4 686 540 0 0 0 chr3 13362327 13362387 -146237396 + (TA)n Simple_repeat Simple_repeat 2 61 0 4 686 268 279 62 25 chr3 13362427 13362508 -146237275 + B1F SINE Alu 63 146 -3 4 686 296 258 0 136 chr3 13362508 13362530 -146237253 + MT2B LTR ERVL 149 156 -445 4 686 519 307 0 0 chr3 13362530 13362657 -146237126 + B1_Mur3 SINE Alu 2 128 -21 4 686 295 297 20 74 chr3 13362531 13362680 -146237103 + ID_B1 SINE B4 84 224 0 4 686 21 71 0 0 chr3 13362804 13362846 -146236937 + AT_rich Low_complexity Low_complexity 1 42 0 4 686 34147 84 5 14 chr3 13362962 13368981 -146230802 - L1Md_F2 LINE L1 -14 6568 607 4 85 1490 239 24 6 chr3 13369138 13369467 -146230316 + L1VL2 LINE L1 65 399 -5936 4 687 53 40 0 0 chr3 13369767 13369841 -146229942 + AT_rich Low_complexity Low_complexity 1 74 0 4 687 21 57 0 0 chr3 13369861 13369896 -146229887 + AT_rich Low_complexity Low_complexity 1 35 0 4 687 1075 88 4 2 chr3 13371307 13371468 -146228315 - L1_Mus1 LINE L1 -601 5965 5803 4 687 1308 79 0 0 chr3 13371652 13371830 -146227953 + (TTCTCC)n Simple_repeat Simple_repeat 3 180 0 4 687 1029 123 0 0 chr3 13371838 13371984 -146227799 - B1_Mus1 SINE Alu -2 146 1 4 687 23 54 0 0 chr3 13371995 13372032 -146227751 + AT_rich Low_complexity Low_complexity 1 37 0 4 687 1146 260 14 37 chr3 13372032 13372383 -146227400 - Lx LINE L1 -2 6974 6632 4 687 2573 167 25 0 chr3 13372422 13372860 -146226923 - Lx LINE L1 -6 6648 6200 4 687 2790 126 72 0 chr3 13372863 13373309 -146226474 + L1_Mus4 LINE L1 5669 6146 -490 4 687 37776 58 10 9 chr3 13373423 13379916 -146219867 - L1Md_T LINE L1 0 6585 101 4 687 26 50 0 0 chr3 13380262 13380302 -146219481 + AT_rich Low_complexity Low_complexity 1 40 0 4 687 204 250 0 0 chr3 13381264 13381344 -146218439 + (TG)n Simple_repeat Simple_repeat 1 80 0 4 687 270 235 0 0 chr3 13381614 13381695 -146218088 + (CA)n Simple_repeat Simple_repeat 2 82 0 4 687 710 242 74 26 chr3 13382393 13382622 -146217161 + Tigger12 DNA MER2_type 1665 1904 -55 4 687 205 159 45 0 chr3 13382663 13382707 -146217076 + (CAGAGA)n Simple_repeat Simple_repeat 3 48 0 4 687 249 350 9 118 chr3 13382719 13382829 -146216954 + B1_Mur2 SINE Alu 9 106 -14 4 687 219 125 0 0 chr3 13382957 13382997 -146216786 + (GA)n Simple_repeat Simple_repeat 1 40 0 4 687 1867 188 20 28 chr3 13383012 13383406 -146216377 + Lx7 LINE L1 5457 5847 -33 4 687 684 240 70 29 chr3 13383406 13383578 -146216205 + RLTR18 LTR ERVK 1 179 -437 4 687 652 179 21 7 chr3 13383642 13383783 -146216000 + URR1B DNA MER1_type 83 225 0 4 687 1906 216 86 2 chr3 13383798 13384207 -146215576 + RLTR18 LTR ERVK 174 616 0 4 687 1721 272 26 114 chr3 13384207 13384979 -146214804 + Lx7 LINE L1 5844 6547 -1149 4 687 301 144 385 11 chr3 13384980 13385071 -146214712 + Lx6 LINE L1 6770 6894 -566 4 687 234 62 0 0 chr3 13385072 13385104 -146214679 + (GA)n Simple_repeat Simple_repeat 2 33 0 4 687 1672 297 69 13 chr3 13385104 13385643 -146214140 + Lx6 LINE L1 6842 7410 -50 4 687 190 185 30 15 chr3 13386480 13386503 -146213280 + polypurine Low_complexity Low_complexity 2 24 0 4 687 994 130 6 6 chr3 13386503 13386681 -146213102 + (GGGA)n Simple_repeat Simple_repeat 1 178 0 4 687 190 185 30 15 chr3 13386681 13386723 -146213060 + GA-rich Low_complexity Low_complexity 25 68 0 4 687 686 238 48 6 chr3 13386879 13387061 -146212722 + Lx7 LINE L1 6792 6985 -475 4 687 376 222 148 27 chr3 13387145 13387304 -146212479 + MT2A LTR ERVL 1 170 -431 4 687 645 14 0 0 chr3 13387362 13387436 -146212347 + (TG)n Simple_repeat Simple_repeat 1 74 0 4 687 447 19 0 0 chr3 13387436 13387487 -146212296 + (GA)n Simple_repeat Simple_repeat 1 52 0 4 687 243 88 0 0 chr3 13387555 13387589 -146212194 + (TTA)n Simple_repeat Simple_repeat 2 35 0 4 687 1773 235 34 31 chr3 13387609 13387940 -146211843 + MTC LTR MaLR 8 347 -74 4 687 1068 93 0 0 chr3 13387940 13388079 -146211704 + B1_Mus1 SINE Alu 1 139 -9 4 687 295 60 20 20 chr3 13388079 13388130 -146211653 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 4 687 1773 235 34 31 chr3 13388130 13388210 -146211573 + MTC LTR MaLR 348 420 -1 4 687 22 0 0 0 chr3 13388444 13388466 -146211317 + AT_rich Low_complexity Low_complexity 1 22 0 4 687 22 56 0 0 chr3 13389124 13389160 -146210623 + AT_rich Low_complexity Low_complexity 1 36 0 4 687 1423 247 36 28 chr3 13389171 13389529 -146210254 - ORR1D1 LTR MaLR -2 372 12 4 687 929 282 95 45 chr3 13389566 13389944 -146209839 - Lx6 LINE L1 -26 7434 7038 4 687 758 263 34 34 chr3 13389959 13390267 -146209516 - RMER17C LTR ERVK 0 410 103 4 687 1101 91 0 22 chr3 13390267 13390447 -146209336 + (GGAGA)n Simple_repeat Simple_repeat 4 179 0 4 687 758 263 34 34 chr3 13390447 13390465 -146209318 - RMER17C LTR ERVK -308 102 85 4 687 729 130 22 7 chr3 13390465 13390604 -146209179 + GA-rich Low_complexity Low_complexity 5 145 0 4 687 489 235 31 70 chr3 13390604 13390860 -146208923 - RMER17C LTR ERVK -164 246 1 4 687 2127 139 74 16 chr3 13390860 13391226 -146208557 - RMER17C-int LTR ERVK 0 3238 2852 4 687 3450 123 29 53 chr3 13391245 13392419 -146207364 + L1VL4 LINE L1 301 1448 -2111 4 687 7540 148 65 43 chr3 13392437 13393374 -146206409 - RMER17C-int LTR ERVK -482 2756 1800 4 687 2864 126 5 5 chr3 13393374 13393814 -146205969 + L1_Mus4 LINE L1 6195 6634 -2 4 687 7540 148 65 43 chr3 13393814 13394387 -146205396 - RMER17C-int LTR ERVK -1439 1799 1212 4 687 1334 221 46 72 chr3 13394438 13394662 -146205121 - RMER17C-int LTR ERVK -2816 422 208 4 687 3449 30 0 0 chr3 13394662 13395058 -146204725 - MTA_Mm LTR MaLR 0 396 1 4 687 1334 221 46 72 chr3 13395058 13395266 -146204517 - RMER17C-int LTR ERVK -3031 207 1 4 687 2955 266 91 53 chr3 13395305 13396119 -146203664 - MYSERV-int LTR ERVK -1496 5054 4175 4 687 1214 48 0 0 chr3 13396119 13396265 -146203518 + B1_Mm SINE Alu 2 147 0 4 687 2955 266 91 53 chr3 13396265 13396686 -146203097 - MYSERV-int LTR ERVK -2376 4174 3772 4 687 29 0 0 0 chr3 13396939 13396968 -146202815 + AT_rich Low_complexity Low_complexity 1 29 0 4 687 555 16 0 0 chr3 13396984 13397048 -146202735 + (TC)n Simple_repeat Simple_repeat 1 64 0 4 687 3231 239 80 37 chr3 13397777 13398640 -146201143 + Lx6 LINE L1 6388 7287 -173 4 687 256 283 65 0 chr3 13398714 13398806 -146200977 + Lx7 LINE L1 7189 7286 -410 5 687 204 67 0 0 chr3 13398940 13398970 -146200813 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 5 687 36 40 0 0 chr3 13399047 13399097 -146200686 + AT_rich Low_complexity Low_complexity 1 50 0 5 687 1095 277 146 34 chr3 13399218 13399369 -146200414 + RMER15 LTR ERVL 22 191 -384 5 687 5092 69 4 7 chr3 13399369 13400059 -146199724 + L1Md_F2 LINE L1 5895 6582 0 5 687 1095 277 146 34 chr3 13400059 13400401 -146199382 + RMER15 LTR ERVL 192 570 -5 5 687 258 355 11 21 chr3 13400428 13400523 -146199260 + B4 SINE B4 3 96 -196 5 687 235 336 8 93 chr3 13400523 13400546 -146199237 + B3A SINE B2 3 110 -88 5 687 195 42 0 0 chr3 13400763 13400787 -146198996 + (TAA)n Simple_repeat Simple_repeat 3 26 0 5 687 234 253 228 20 chr3 13402125 13402274 -146197509 + L1M7 LINE L1 33 212 -6006 5 687 183 80 0 0 chr3 13403513 13403538 -146196245 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 5 687 225 0 0 0 chr3 13404801 13404826 -146194957 + (TA)n Simple_repeat Simple_repeat 2 26 0 5 687 381 296 20 0 chr3 13407390 13407488 -146192295 + RSINE1 SINE B4 4 103 -62 5 687 609 14 0 0 chr3 13407489 13407559 -146192224 + (CA)n Simple_repeat Simple_repeat 1 70 0 5 687 351 0 0 0 chr3 13407559 13407597 -146192186 + (GA)n Simple_repeat Simple_repeat 2 40 0 5 687 286 372 110 38 chr3 13407982 13408300 -146191483 - MT2A LTR ERVL -10 523 183 5 687 268 236 0 0 chr3 13408396 13408451 -146191332 - MTEa LTR MaLR -320 59 5 5 687 1217 238 120 19 chr3 13408468 13408793 -146190990 - ORR1D1 LTR MaLR -12 362 5 5 687 186 333 89 34 chr3 13408802 13408948 -146190835 - L2 LINE L2 -798 2621 2468 5 687 390 21 0 0 chr3 13409234 13409281 -146190502 + (TG)n Simple_repeat Simple_repeat 2 48 0 5 687 21 36 0 0 chr3 13409785 13409813 -146189970 + AT_rich Low_complexity Low_complexity 1 28 0 5 687 231 139 0 0 chr3 13410751 13410787 -146188996 + Lx9 LINE L1 7370 7405 -239 5 687 23 0 0 0 chr3 13410787 13410810 -146188973 + AT_rich Low_complexity Low_complexity 1 23 0 5 687 22 0 0 0 chr3 13410828 13410850 -146188933 + AT_rich Low_complexity Low_complexity 1 22 0 5 687 242 190 35 0 chr3 13410895 13410953 -146188830 + Lx9 LINE L1 7407 7466 -178 5 687 220 242 32 21 chr3 13410955 13411048 -146188735 + (TA)n Simple_repeat Simple_repeat 2 95 0 5 687 315 0 0 0 chr3 13411048 13411083 -146188700 + (CA)n Simple_repeat Simple_repeat 2 36 0 5 687 1034 59 7 0 chr3 13411086 13411222 -146188561 - MTA_Mm LTR MaLR 0 396 260 5 687 2930 120 70 16 chr3 13411220 13411587 -146188196 - MTB-int LTR MaLR -216 882 380 5 687 2110 80 0 0 chr3 13411587 13411862 -146187921 - L1_Mus1 LINE L1 -1 6566 6292 5 687 2930 102 97 26 chr3 13411862 13412226 -146187557 - MTB-int LTR MaLR -719 379 1 5 687 3097 70 8 0 chr3 13412226 13412623 -146187160 - MTB LTR MaLR 0 400 1 5 687 368 223 0 47 chr3 13412667 13412794 -146186989 + Lx9 LINE L1 7481 7601 -43 5 687 447 264 65 0 chr3 13412915 13413070 -146186713 - L1MB1 LINE L1 -68 6100 5936 5 687 253 301 62 94 chr3 13413107 13413331 -146186452 + L1M3 LINE L1 5558 5774 -394 5 687 22 35 0 0 chr3 13414132 13414161 -146185622 + AT_rich Low_complexity Low_complexity 1 29 0 5 687 2967 215 62 7 chr3 13414261 13414965 -146184818 + Lx7 LINE L1 5052 5794 -86 5 687 632 275 0 0 chr3 13414965 13415103 -146184680 + B1_Mur4 SINE Alu 1 138 -12 5 687 261 0 0 0 chr3 13415123 13415152 -146184631 + (TAA)n Simple_repeat Simple_repeat 2 30 0 5 687 494 256 85 26 chr3 13415231 13415420 -146184363 + Lx7 LINE L1 5881 6080 -1616 5 687 625 178 53 18 chr3 13415456 13415626 -146184157 - RLTR13B1 LTR ERVK -777 201 4 5 687 1458 94 38 0 chr3 13415634 13415846 -146183937 + L1_Mus1 LINE L1 6348 6567 0 5 687 1091 81 17 6 chr3 13415904 13416078 -146183705 + (TTTCC)n Simple_repeat Simple_repeat 5 180 0 5 687 393 75 0 0 chr3 13416102 13416155 -146183628 + (TC)n Simple_repeat Simple_repeat 2 54 0 5 687 316 329 116 12 chr3 13416806 13416978 -146182805 - MIRb SINE MIR -34 234 45 5 687 515 353 10 5 chr3 13417757 13417959 -146181824 + B3 SINE B2 1 203 -13 5 687 942 118 12 6 chr3 13417981 13418152 -146181631 + (GAAA)n Simple_repeat Simple_repeat 2 173 0 5 687 501 349 0 0 chr3 13418252 13418384 -146181399 + RSINE1 SINE B4 3 134 -31 5 687 28 0 0 0 chr3 13418726 13418754 -146181029 + AT_rich Low_complexity Low_complexity 1 28 0 5 687 290 311 13 7 chr3 13420033 13420185 -146179598 + L1MB2 LINE L1 5775 5927 -244 5 687 1629 263 40 0 chr3 13420284 13420687 -146179096 - MTD LTR MaLR 0 419 1 5 687 1258 70 6 0 chr3 13422299 13422470 -146177313 - L1_Mm LINE L1 -1937 3946 3775 5 687 12330 71 3 1 chr3 13422469 13424086 -146175697 + L1_Mm LINE L1 3965 5586 -297 5 687 7613 73 3 0 chr3 13424086 13425079 -146174704 + L1Md_F2 LINE L1 5587 6582 0 5 687 12330 71 3 1 chr3 13425079 13425090 -146174693 + L1_Mm LINE L1 5587 5596 -287 5 687 615 144 10 0 chr3 13425249 13425353 -146174430 - RMER6-int LTR ERVK -293 2884 2780 5 687 988 228 132 4 chr3 13425347 13425581 -146174202 - RMER6-int LTR ERVK -2913 264 1 5 687 918 282 81 40 chr3 13425581 13425735 -146174048 - RMER6C LTR ERVK 0 756 589 5 687 198 0 0 0 chr3 13425735 13425757 -146174026 + (TTGG)n Simple_repeat Simple_repeat 2 23 0 5 687 1057 215 31 21 chr3 13425757 13426005 -146173778 - RMER6C LTR ERVK -79 611 346 5 687 210 118 0 0 chr3 13426005 13426039 -146173744 + (TCTA)n Simple_repeat Simple_repeat 2 35 0 5 687 1754 215 145 18 chr3 13426041 13426756 -146173027 + RMER19B LTR ERVK 1 890 -12 5 687 1745 152 95 0 chr3 13426773 13427089 -146172694 - RMER6C LTR ERVK -344 346 1 5 687 231 186 0 33 chr3 13427108 13427169 -146172614 + A-rich Low_complexity Low_complexity 6 64 0 5 687 306 169 64 13 chr3 13427191 13427269 -146172514 + RMER5 LTR ERV1 446 527 -7 5 687 406 352 48 0 chr3 13427441 13427586 -146172197 + Lx8 LINE L1 7165 7316 -157 5 687 425 48 0 31 chr3 13428087 13428152 -146171631 + (CAAAA)n Simple_repeat Simple_repeat 2 64 0 5 687 3562 76 0 0 chr3 13428561 13429023 -146170760 - L1_Mus1 LINE L1 -3 6564 6103 5 687 851 296 147 43 chr3 13430200 13430757 -146169026 + MER67C LTR ERV1 94 708 -3 5 687 953 299 117 48 chr3 13431217 13431406 -146168377 + RMER5 LTR ERV1 1 196 -338 5 687 285 75 0 0 chr3 13431406 13431446 -146168337 + (CAAA)n Simple_repeat Simple_repeat 1 40 0 5 687 953 299 117 48 chr3 13431446 13431754 -146168029 + RMER5 LTR ERV1 197 531 -3 5 687 1560 212 70 43 chr3 13431925 13432387 -146167396 - RMER2 LTR ERV1 0 567 1 5 687 562 301 37 6 chr3 13432387 13432539 -146167244 + RLTR33 LTR ERVK 522 678 0 5 687 4137 111 54 5 chr3 13432645 13433297 -146166486 - Lx3A LINE L1 -5 6976 6293 5 687 698 215 0 65 chr3 13433466 13433620 -146166163 - B1_Mus2 SINE Alu -1 146 3 5 687 21 36 0 0 chr3 13433893 13433921 -146165862 + AT_rich Low_complexity Low_complexity 1 28 0 5 687 921 214 21 5 chr3 13434478 13434729 -146165054 + L1_Mur3 LINE L1 2005 2268 -3612 5 687 241 277 31 0 chr3 13435124 13435189 -146164594 + Lx8 LINE L1 6101 6167 -1306 5 687 261 0 0 0 chr3 13435251 13435280 -146164503 + (CAA)n Simple_repeat Simple_repeat 2 30 0 5 687 1603 205 22 0 chr3 13435321 13435643 -146164140 - ORR1A4 LTR MaLR 0 329 1 5 687 654 370 65 21 chr3 13435645 13436305 -146163478 + Lx8 LINE L1 6738 7426 -47 5 687 1034 326 99 7 chr3 13436915 13437329 -146162454 + Lx8 LINE L1 6207 6658 -815 5 687 235 208 0 20 chr3 13437333 13437382 -146162401 + MTD LTR MaLR 367 414 -5 5 687 1755 319 86 56 chr3 13437477 13438489 -146161294 + Lx7 LINE L1 6279 7320 -376 5 687 1606 109 16 4 chr3 13439076 13439325 -146160458 + L1_Mus3 LINE L1 6384 6635 -3 5 687 1141 228 154 144 chr3 13439514 13440227 -146159556 + RMER6D LTR ERVK 1 720 0 5 687 411 325 32 6 chr3 13440690 13440848 -146158935 - L1MC3 LINE L1 -460 7325 7164 5 687 237 416 0 29 chr3 13440923 13441027 -146158756 + ID_B1 SINE B4 79 179 -45 5 687 268 356 47 19 chr3 13440934 13441040 -146158743 + PB1D7 SINE Alu 9 117 -3 5 687 849 228 9 111 chr3 13443028 13443234 -146156549 - Lx7 LINE L1 0 7696 7497 5 687 207 0 0 0 chr3 13443234 13443257 -146156526 + (CAAAA)n Simple_repeat Simple_repeat 5 27 0 5 687 1124 62 7 0 chr3 13443257 13443402 -146156381 + B1_Mm SINE Alu 2 147 0 5 687 849 228 9 111 chr3 13443402 13443510 -146156273 - Lx7 LINE L1 -200 7496 7414 5 687 243 296 20 0 chr3 13443671 13443769 -146156014 - Lx7 LINE L1 -329 7367 7268 5 687 454 149 0 0 chr3 13443800 13443874 -146155909 + L1_Mm LINE L1 5040 5113 -770 5 687 2672 179 29 48 chr3 13443874 13444419 -146155364 + RLTR26 LTR ERVK 1 535 -107 5 687 6358 199 65 18 chr3 13444427 13444869 -146154914 + Lx2 LINE L1 5620 6125 -848 5 687 503 79 26 0 chr3 13444869 13444945 -146154838 + (CATA)n Simple_repeat Simple_repeat 3 80 0 5 687 6358 155 51 12 chr3 13444945 13445790 -146153993 + Lx2 LINE L1 6115 6996 -1 5 687 1917 257 48 0 chr3 13445791 13446269 -146153514 - Lx7 LINE L1 -438 7258 6758 5 687 1315 199 14 40 chr3 13446265 13446542 -146153241 + L1_Mur3 LINE L1 5409 5678 -202 5 687 55 0 0 0 chr3 13446551 13446606 -146153177 + AT_rich Low_complexity Low_complexity 1 55 0 5 687 7473 73 1 2 chr3 13446652 13447630 -146152153 - L1Md_F2 LINE L1 0 6582 5606 5 687 13578 104 5 14 chr3 13447622 13450333 -146149450 - L1Md_A LINE L1 -2769 3114 446 5 687 1298 188 6 88 chr3 13450377 13450716 -146149067 - L1_Mur3 LINE L1 -463 5417 5107 5 687 22 56 0 0 chr3 13451007 13451043 -146148740 + AT_rich Low_complexity Low_complexity 1 36 0 5 687 25 0 0 0 chr3 13451131 13451156 -146148627 + AT_rich Low_complexity Low_complexity 1 25 0 5 687 481 252 10 0 chr3 13451332 13451431 -146148352 + B2_Mm2 SINE B2 1 100 -95 5 687 9834 86 28 12 chr3 13451449 13452219 -146147564 - L1_Mur1 LINE L1 -5 3909 3131 5 687 207 0 0 0 chr3 13452219 13452242 -146147541 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 5 687 9834 125 32 49 chr3 13452242 13452964 -146146819 - L1_Mur1 LINE L1 -2751 3135 2437 5 687 913 116 0 7 chr3 13452964 13453103 -146146680 - B1_Mus1 SINE Alu -2 146 9 5 687 362 302 53 73 chr3 13452970 13453120 -146146663 - B4A SINE B4 -73 219 73 5 687 9834 125 32 49 chr3 13453120 13453505 -146146278 - L1_Mur1 LINE L1 -2751 2436 2063 5 687 2629 83 0 59 chr3 13453505 13453913 -146145870 - L1_Mus2 LINE L1 0 6566 6183 5 687 9822 146 29 47 chr3 13453913 13455366 -146144417 - MusHAL1 LINE L1 -3824 2062 572 5 687 207 146 0 0 chr3 13456990 13457031 -146142752 + (TTTTG)n Simple_repeat Simple_repeat 3 43 0 5 687 30 59 0 0 chr3 13457802 13457853 -146141930 + AT_rich Low_complexity Low_complexity 1 51 0 5 687 351 0 0 0 chr3 13457884 13457923 -146141860 + (TG)n Simple_repeat Simple_repeat 1 39 0 5 687 205 250 42 0 chr3 13458813 13458861 -146140922 + MIR SINE MIR 126 175 -87 6 687 189 121 0 0 chr3 13459339 13459372 -146140411 + (TAAA)n Simple_repeat Simple_repeat 2 34 0 6 687 2183 278 108 25 chr3 13459416 13460047 -146139736 + Lx8 LINE L1 6379 7077 -396 6 687 2635 70 6 6 chr3 13460047 13460393 -146139390 - ORR1A1 LTR MaLR 0 346 1 6 687 2183 278 108 25 chr3 13460393 13460552 -146139231 + Lx8 LINE L1 7078 7234 -239 6 687 1052 208 39 0 chr3 13460617 13460824 -146138959 - URR1B DNA MER1_type 0 225 11 6 687 399 261 25 127 chr3 13460824 13460982 -146138801 + Lx8 LINE L1 7246 7387 -86 6 687 3369 195 243 7 chr3 13461434 13462142 -146137641 + RMER1B Other Other 45 923 -143 6 687 197 65 0 31 chr3 13462142 13462174 -146137609 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 6 687 3369 195 243 7 chr3 13462174 13462283 -146137500 + RMER1B Other Other 924 1054 -12 6 687 25 31 0 0 chr3 13462322 13462354 -146137429 + AT_rich Low_complexity Low_complexity 1 32 0 6 687 235 379 130 9 chr3 13462548 13462764 -146137019 + L4 LINE RTE 1153 1394 -635 6 687 1169 61 0 0 chr3 13462870 13463018 -146136765 + B1_Mus1 SINE Alu 1 148 0 6 687 654 256 0 0 chr3 13463018 13463198 -146136585 + A-rich Low_complexity Low_complexity 1 180 0 6 687 259 222 0 0 chr3 13463199 13463244 -146136539 + polypurine Low_complexity Low_complexity 4 48 0 6 687 204 40 0 0 chr3 13463902 13463927 -146135856 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 6 687 24 32 0 0 chr3 13464375 13464406 -146135377 + AT_rich Low_complexity Low_complexity 1 31 0 6 687 223 267 0 16 chr3 13464596 13464657 -146135126 + (TATG)n Simple_repeat Simple_repeat 3 62 0 6 687 1087 58 7 0 chr3 13465998 13466135 -146133648 + B1_Mm SINE Alu 1 138 -9 6 687 197 33 33 0 chr3 13466135 13466165 -146133618 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 6 687 264 250 67 22 chr3 13466801 13466891 -146132892 - MIR SINE MIR -75 187 94 6 687 582 221 56 14 chr3 13467483 13467625 -146132158 - B1_Mur2 SINE Alu 0 149 2 6 687 299 318 37 9 chr3 13469311 13469419 -146130364 + MIRb SINE MIR 85 195 -73 6 687 23 0 0 0 chr3 13470455 13470478 -146129305 + AT_rich Low_complexity Low_complexity 1 23 0 6 687 198 0 0 0 chr3 13471185 13471207 -146128576 + (A)n Simple_repeat Simple_repeat 1 22 0 6 687 276 111 0 0 chr3 13471546 13471591 -146128192 + (CGG)n Simple_repeat Simple_repeat 3 47 0 6 687 339 181 0 0 chr3 13471975 13472047 -146127736 + T-rich Low_complexity Low_complexity 1 72 0 6 687 183 204 0 0 chr3 13472852 13472896 -146126887 + (TG)n Simple_repeat Simple_repeat 1 44 0 6 687 204 256 58 0 chr3 13474651 13474737 -146125046 + (GCTG)n Simple_repeat Simple_repeat 1 91 0 6 687 29 84 0 0 chr3 13475697 13475768 -146124015 + AT_rich Low_complexity Low_complexity 1 71 0 6 687 899 271 0 0 chr3 13475846 13476034 -146123749 - B3 SINE B2 -28 188 1 6 687 208 184 41 58 chr3 13477344 13477465 -146122318 + (TATATG)n Simple_repeat Simple_repeat 2 120 0 6 687 25 75 0 0 chr3 13477568 13477621 -146122162 + AT_rich Low_complexity Low_complexity 1 53 0 6 687 381 43 0 0 chr3 13477717 13477764 -146122019 + (TG)n Simple_repeat Simple_repeat 2 48 0 6 687 633 307 135 88 chr3 13477933 13478512 -146121271 - Lx8 LINE L1 -403 7070 6465 6 687 489 62 0 0 chr3 13479920 13479985 -146119798 + (TG)n Simple_repeat Simple_repeat 1 65 0 6 687 207 0 0 0 chr3 13480196 13480219 -146119564 + (TG)n Simple_repeat Simple_repeat 2 24 0 6 687 317 326 152 17 chr3 13480557 13480794 -146118989 + L1MC4 LINE L1 6865 7133 -909 6 687 224 350 69 14 chr3 13482721 13482866 -146116917 - RSINE1 SINE B4 -10 155 3 6 687 510 328 80 51 chr3 13484588 13484864 -146114919 + B4A SINE B4 1 284 -8 6 687 1669 88 40 0 chr3 13485106 13485334 -146114449 - L1_Mus3 LINE L1 -155 6483 6247 6 687 629 279 24 38 chr3 13486767 13486979 -146112804 - B3 SINE B2 -6 210 2 6 687 333 284 135 0 chr3 13488854 13488928 -146110855 + B1_Mur3 SINE Alu 3 86 -63 6 687 196 346 24 36 chr3 13489732 13489816 -146109967 - MIRb SINE MIR -81 187 105 6 687 370 285 162 79 chr3 13490661 13490901 -146108882 - MLT1B LTR MaLR -121 269 10 6 687 189 74 0 0 chr3 13491001 13491028 -146108755 + (TG)n Simple_repeat Simple_repeat 2 28 0 6 687 396 207 50 88 chr3 13491704 13491863 -146107920 + Lx5 LINE L1 5977 6129 -921 6 687 563 298 75 80 chr3 13491871 13491979 -146107804 + L1MA9 LINE L1 5356 5479 -812 6 687 416 206 10 0 chr3 13491979 13492081 -146107702 + Lx9 LINE L1 7532 7634 -10 6 687 563 298 75 80 chr3 13492081 13492399 -146107384 + L1MA9 LINE L1 5480 5779 -512 6 687 333 0 0 0 chr3 13492414 13492451 -146107332 + (CA)n Simple_repeat Simple_repeat 2 38 0 6 687 487 269 199 26 chr3 13492451 13492802 -146106981 + L1MA9 LINE L1 5864 6275 -37 6 687 277 289 48 0 chr3 13493570 13493736 -146106047 + (TATAG)n Simple_repeat Simple_repeat 5 178 0 6 687 381 244 50 0 chr3 13493653 13493813 -146105970 + (TAGTG)n Simple_repeat Simple_repeat 1 168 0 6 687 30 27 0 0 chr3 13494317 13494354 -146105429 + AT_rich Low_complexity Low_complexity 1 37 0 6 687 237 194 40 53 chr3 13494671 13494747 -146105036 + RLTR3_Mm LTR ERVK 314 388 -940 6 687 21 0 0 0 chr3 13495962 13495983 -146103800 + AT_rich Low_complexity Low_complexity 1 21 0 6 687 199 281 155 14 chr3 13496016 13496167 -146103616 - MIRm SINE MIR -84 192 9 6 687 3120 157 26 37 chr3 13497257 13497782 -146102001 - RLTR12A LTR ERVK -5 563 37 6 687 1302 60 0 0 chr3 13497782 13497950 -146101833 + L1_Mus2 LINE L1 6398 6565 -1 6 687 3120 157 26 37 chr3 13497950 13497993 -146101790 - RLTR12A LTR ERVK -532 36 1 6 687 27 0 0 0 chr3 13498000 13498027 -146101756 + AT_rich Low_complexity Low_complexity 1 27 0 6 687 429 20 0 0 chr3 13498129 13498179 -146101604 + (GA)n Simple_repeat Simple_repeat 1 50 0 6 687 351 0 0 0 chr3 13498179 13498218 -146101565 + (TATG)n Simple_repeat Simple_repeat 1 39 0 6 687 504 311 41 107 chr3 13498410 13498579 -146101204 + B3A SINE B2 4 161 -32 6 687 299 262 12 12 chr3 13500285 13500366 -146099417 + (TG)n Simple_repeat Simple_repeat 2 82 0 1 688 285 350 50 28 chr3 13500636 13500777 -146099006 - MER2B DNA MER2_type -5 331 188 2 688 25 31 0 0 chr3 13501744 13501776 -146098007 + AT_rich Low_complexity Low_complexity 1 32 0 3 688 3983 24 19 0 chr3 13501823 13502290 -146097493 - L1Md_F2 LINE L1 -2 6580 6105 4 688 1231 59 0 0 chr3 13502290 13502443 -146097340 + L1Md_F2 LINE L1 5943 6095 -487 4 688 477 0 0 0 chr3 13503640 13503693 -146096090 + (TG)n Simple_repeat Simple_repeat 2 54 0 5 688 192 403 47 31 chr3 13505378 13505506 -146094277 + MIRc SINE MIR 31 160 -108 6 688 2195 79 56 9 chr3 13505882 13506201 -146093582 + L1Md_F2 LINE L1 6247 6580 -2 7 688 405 58 0 0 chr3 13506279 13506331 -146093452 + (TA)n Simple_repeat Simple_repeat 2 53 0 8 688 828 129 34 0 chr3 13506562 13506709 -146093074 + URR1A DNA MER1_type 75 226 0 9 688 2803 63 50 5 chr3 13506819 13507202 -146092581 + MTB LTR MaLR 1 400 0 1 688 498 352 78 39 chr3 13507227 13507508 -146092275 + L2b LINE L2 2657 2948 -471 1 688 209 93 0 65 chr3 13507703 13507749 -146092034 + (TTATA)n Simple_repeat Simple_repeat 1 43 0 1 688 185 357 87 26 chr3 13507869 13507984 -146091799 + L2b LINE L2 3254 3375 0 1 688 524 371 48 0 chr3 13508693 13508879 -146090904 + ID_B1 SINE B4 2 196 -28 1 688 23 0 0 0 chr3 13509033 13509056 -146090727 + AT_rich Low_complexity Low_complexity 1 23 0 1 688 213 94 0 0 chr3 13509981 13510013 -146089770 + (T)n Simple_repeat Simple_repeat 1 32 0 1 688 249 57 0 0 chr3 13510070 13510105 -146089678 + (GA)n Simple_repeat Simple_repeat 2 36 0 1 688 21 57 0 0 chr3 13510267 13510302 -146089481 + AT_rich Low_complexity Low_complexity 1 35 0 1 688 379 260 134 4 chr3 13510833 13510962 -146088821 - MLT1A1 LTR MaLR -19 389 208 1 688 334 136 0 63 chr3 13511308 13511371 -146088412 - MT2B LTR ERVL -230 371 313 1 688 19252 165 96 4 chr3 13511657 13515905 -146083878 - L1_Mus3 LINE L1 -8 6630 1885 2 688 2318 130 125 5 chr3 13515905 13516329 -146083454 - IAPLTR2_Mm LTR ERVK 0 475 1 2 688 19252 211 68 28 chr3 13516329 13517955 -146081828 - L1_Mus3 LINE L1 -4002 1884 234 2 688 552 42 0 0 chr3 13517972 13518043 -146081740 + (TG)n Simple_repeat Simple_repeat 1 71 0 2 688 226 209 217 29 chr3 13518100 13518169 -146081614 - B4 SINE B4 -208 84 3 2 688 3644 169 45 9 chr3 13519527 13520281 -146079502 - Lx4B LINE L1 -1112 5946 5144 2 688 2512 142 27 10 chr3 13520281 13520685 -146079098 - MT2B LTR ERVL 0 601 191 2 688 2563 185 72 44 chr3 13520686 13521097 -146078686 - RMER17B LTR ERVK 0 958 521 2 688 4172 58 2 7 chr3 13521097 13521635 -146078148 - L1Md_F2 LINE L1 -10 6572 6038 2 688 2563 185 72 44 chr3 13521635 13521766 -146078017 - RMER17B LTR ERVK -438 520 401 2 688 4217 59 0 43 chr3 13521785 13522366 -146077417 - L1_Mus2 LINE L1 0 6566 6011 2 688 189 74 0 0 chr3 13522630 13522657 -146077126 + (GAAAA)n Simple_repeat Simple_repeat 4 30 0 2 688 2463 141 29 4 chr3 13522658 13523119 -146076664 - RMER17B LTR ERVK -521 437 1 2 688 1182 142 26 0 chr3 13523119 13523309 -146076474 - MT2B LTR ERVL -406 195 1 2 688 261 188 0 0 chr3 13523314 13523362 -146076421 - Lx4B LINE L1 -734 5152 5105 2 688 788 247 133 0 chr3 13524779 13525042 -146074741 - RMER1C Other Other -3 1339 1042 3 688 1321 233 41 16 chr3 13525052 13525370 -146074413 - Lx4B LINE L1 -4 7054 6729 3 688 324 0 0 0 chr3 13525909 13525945 -146073838 + (T)n Simple_repeat Simple_repeat 1 36 0 3 688 249 310 69 10 chr3 13526478 13526579 -146073204 - PB1D10 SINE Alu -7 110 4 3 688 21 0 0 0 chr3 13527288 13527309 -146072474 + AT_rich Low_complexity Low_complexity 1 21 0 3 688 225 0 0 0 chr3 13527736 13527761 -146072022 + (TG)n Simple_repeat Simple_repeat 2 26 0 3 688 28 29 0 0 chr3 13528149 13528184 -146071599 + AT_rich Low_complexity Low_complexity 1 35 0 3 688 376 306 36 7 chr3 13528246 13528384 -146071399 - B1F1 SINE Alu -4 145 4 3 688 21 36 0 0 chr3 13530125 13530153 -146069630 + AT_rich Low_complexity Low_complexity 1 28 0 3 688 900 143 137 0 chr3 13530695 13530856 -146068927 + URR1B DNA MER1_type 1 183 -42 3 688 23 68 0 0 chr3 13530883 13530927 -146068856 + AT_rich Low_complexity Low_complexity 1 44 0 4 688 240 184 0 0 chr3 13532052 13532101 -146067682 + T-rich Low_complexity Low_complexity 1 49 0 4 688 276 216 0 0 chr3 13532180 13532231 -146067552 + B4A SINE B4 149 199 -93 4 688 255 278 53 40 chr3 13532688 13532763 -146067020 - RLTR20D LTR ERVK -433 135 60 4 688 1638 228 70 3 chr3 13533064 13533433 -146066350 - ORR1B1 LTR MaLR 0 394 1 4 688 1266 85 0 0 chr3 13533547 13533724 -146066059 + (TTC)n Simple_repeat Simple_repeat 3 179 0 4 688 255 152 0 0 chr3 13533724 13533770 -146066013 + CT-rich Low_complexity Low_complexity 2 47 0 4 688 1205 48 0 0 chr3 13534202 13534347 -146065436 + B1_Mm SINE Alu 2 146 -1 4 688 310 335 70 35 chr3 13534768 13534969 -146064814 + L3 LINE CR1 4101 4308 -181 4 688 401 268 111 53 chr3 13536232 13536589 -146063194 - L1MA6 LINE L1 -28 6272 5861 4 688 294 73 0 0 chr3 13536907 13536948 -146062835 + (TA)n Simple_repeat Simple_repeat 2 42 0 5 688 22 0 0 0 chr3 13537067 13537089 -146062694 + AT_rich Low_complexity Low_complexity 1 22 0 5 688 2166 216 7 20 chr3 13538828 13539277 -146060506 - RMER1B Other Other -143 923 481 5 688 2527 88 17 0 chr3 13539775 13540127 -146059656 - Lx3_Mus LINE L1 0 7009 6652 5 688 2358 144 22 36 chr3 13540361 13540808 -146058975 - Lx3_Mus LINE L1 -1 6653 6213 5 688 445 34 0 0 chr3 13541397 13541456 -146058327 + L1_Mus2 LINE L1 6508 6566 0 5 688 228 275 22 22 chr3 13542989 13543123 -146056660 + (TG)n Simple_repeat Simple_repeat 1 134 0 5 688 260 279 0 0 chr3 13543264 13543325 -146056458 + CT-rich Low_complexity Low_complexity 2 62 0 5 688 268 198 53 32 chr3 13543325 13543419 -146056364 + RCHARR1 DNA MER1_type 778 873 -101 5 688 22 35 0 0 chr3 13543593 13543622 -146056161 + AT_rich Low_complexity Low_complexity 1 29 0 5 688 216 0 0 0 chr3 13543920 13543944 -146055839 + (TA)n Simple_repeat Simple_repeat 1 24 0 5 688 5986 41 11 1 chr3 13543944 13544676 -146055107 - L1Md_F2 LINE L1 -11 6571 5833 6 688 242 21 0 7 chr3 13544676 13544714 -146055069 + L1Md_F2 LINE L1 5790 5826 -756 6 688 22 56 0 0 chr3 13546459 13546495 -146053288 + AT_rich Low_complexity Low_complexity 1 36 0 6 688 1013 313 45 77 chr3 13547049 13547426 -146052357 + MTE2b LTR MaLR 1 365 -14 6 688 330 26 0 0 chr3 13548348 13548387 -146051396 + (TG)n Simple_repeat Simple_repeat 2 40 0 6 688 214 327 139 37 chr3 13548968 13549076 -146050707 + L3 LINE CR1 4216 4334 -155 6 688 276 283 109 8 chr3 13549215 13549234 -146050549 - MIRc SINE MIR -44 224 206 6 688 414 0 0 0 chr3 13549234 13549280 -146050503 + (TA)n Simple_repeat Simple_repeat 1 46 0 6 688 276 283 109 8 chr3 13549280 13549388 -146050395 - MIRc SINE MIR -63 205 85 6 688 3718 98 60 4 chr3 13549996 13550547 -146049236 + Lx LINE L1 6068 6649 -5 6 688 304 354 114 48 chr3 13550566 13551003 -146048780 - MLT1G1 LTR MaLR -2 487 43 6 688 29 0 0 0 chr3 13551989 13552018 -146047765 + AT_rich Low_complexity Low_complexity 1 29 0 6 688 31 107 0 0 chr3 13552641 13552763 -146047020 + AT_rich Low_complexity Low_complexity 1 122 0 7 688 1127 178 58 0 chr3 13552997 13553205 -146046578 + URR1A DNA MER1_type 1 220 -6 7 688 318 26 0 0 chr3 13553232 13553271 -146046512 + (CA)n Simple_repeat Simple_repeat 2 40 0 7 688 237 222 37 0 chr3 13553301 13553382 -146046401 + (TA)n Simple_repeat Simple_repeat 1 84 0 7 688 361 365 104 18 chr3 13553404 13553742 -146046041 - MT2A LTR ERVL -113 420 54 7 688 470 291 78 92 chr3 13554829 13555124 -146044659 + ORR1E LTR MaLR 30 320 -39 7 688 345 344 87 31 chr3 13555253 13555778 -146044005 + MLT1D LTR MaLR 1 497 -127 7 688 387 101 49 25 chr3 13556807 13556929 -146042854 + T-rich Low_complexity Low_complexity 1 125 0 7 688 225 0 0 0 chr3 13556936 13556961 -146042822 + (TTTTA)n Simple_repeat Simple_repeat 3 27 0 7 688 677 105 0 0 chr3 13556961 13557056 -146042727 - B1_Mm SINE Alu -12 135 41 7 688 381 188 0 0 chr3 13557097 13557177 -146042606 + T-rich Low_complexity Low_complexity 1 80 0 8 688 288 284 6 152 chr3 13557706 13557864 -146041919 - LTR84a LTR ERVL -353 404 270 8 688 389 319 8 34 chr3 13558362 13558479 -146041304 - B1F SINE Alu -35 114 1 8 688 21 36 0 0 chr3 13558848 13558876 -146040907 + AT_rich Low_complexity Low_complexity 1 28 0 8 688 237 65 0 0 chr3 13559147 13559178 -146040605 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 8 688 186 43 0 0 chr3 13559831 13559854 -146039929 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 8 688 331 321 54 48 chr3 13559855 13560002 -146039781 + B1F SINE Alu 1 148 -1 8 688 2200 106 27 3 chr3 13560584 13560916 -146038867 - L1_Mus3 LINE L1 -1 6637 6298 8 688 2093 191 4 112 chr3 13561004 13561426 -146038357 + L1VL2 LINE L1 711 1122 -5535 8 688 970 123 0 0 chr3 13561426 13561564 -146038219 + B1_Mus2 SINE Alu 1 138 -9 8 688 2093 178 0 144 chr3 13561564 13561597 -146038186 + L1VL2 LINE L1 1121 1121 -5513 8 688 1294 85 62 0 chr3 13561597 13561774 -146038009 + B2_Mm2 SINE B2 1 188 -7 9 688 345 47 0 0 chr3 13561774 13561817 -146037966 + (GGAA)n Simple_repeat Simple_repeat 3 45 0 9 688 24582 137 16 19 chr3 13561817 13563883 -146035900 + L1VL2 LINE L1 1121 3165 -2718 8 688 937 111 7 0 chr3 13563883 13564018 -146035765 + B1_Mus1 SINE Alu 3 138 -10 9 688 459 0 0 0 chr3 13564018 13564069 -146035714 + (CA)n Simple_repeat Simple_repeat 2 52 0 9 688 24582 135 17 11 chr3 13564069 13566368 -146033415 + L1VL2 LINE L1 3166 5469 -414 8 688 327 151 0 31 chr3 13566501 13566597 -146033186 + (TG)n Simple_repeat Simple_repeat 2 94 0 9 688 3263 93 2 0 chr3 13566712 13567155 -146032628 + L1_Mus2 LINE L1 6123 6566 0 9 688 651 247 35 106 chr3 13567312 13567511 -146032272 + B3 SINE B2 8 192 -3 9 688 213 324 131 19 chr3 13569147 13569254 -146030529 + MIRb SINE MIR 11 129 -139 9 688 185 227 43 43 chr3 13569387 13569456 -146030327 - MIRc SINE MIR -32 236 168 9 688 2141 151 0 14 chr3 13569671 13570041 -146029742 + Lx2 LINE L1 6632 6996 -1 9 688 1007 98 0 0 chr3 13570139 13570282 -146029501 - B1_Mus1 SINE Alu 0 148 6 1 688 441 378 65 18 chr3 13570466 13570695 -146029088 - MLT1D LTR MaLR -263 242 3 1 688 360 0 0 0 chr3 13570915 13570955 -146028828 + (TAA)n Simple_repeat Simple_repeat 1 40 0 1 688 273 273 31 8 chr3 13571324 13571453 -146028330 + (TA)n Simple_repeat Simple_repeat 1 132 0 1 688 237 33 0 0 chr3 13571633 13571663 -146028120 + (TG)n Simple_repeat Simple_repeat 1 30 0 1 688 351 0 0 0 chr3 13571665 13571704 -146028079 + (GA)n Simple_repeat Simple_repeat 2 40 0 1 688 417 153 0 0 chr3 13572331 13572403 -146027380 + (TA)n Simple_repeat Simple_repeat 2 73 0 1 688 288 0 0 0 chr3 13572403 13572435 -146027348 + (CA)n Simple_repeat Simple_repeat 2 33 0 1 688 198 191 0 0 chr3 13572780 13572822 -146026961 + (TG)n Simple_repeat Simple_repeat 1 42 0 1 688 1057 281 94 36 chr3 13573263 13573647 -146026136 + MTD LTR MaLR 1 406 -13 1 688 180 111 0 0 chr3 13573927 13573954 -146025829 + (CAA)n Simple_repeat Simple_repeat 2 28 0 1 688 194 128 0 25 chr3 13574071 13574111 -146025672 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 1 688 797 255 71 44 chr3 13574311 13574676 -146025107 - Lx9 LINE L1 -1529 6115 5741 1 688 198 118 0 0 chr3 13575076 13575110 -146024673 + (TTTTA)n Simple_repeat Simple_repeat 4 37 0 1 688 3803 125 29 2 chr3 13577722 13578306 -146021477 + Lx LINE L1 6047 6646 -8 1 688 523 300 39 11 chr3 13578409 13578591 -146021192 - Lx7 LINE L1 -917 6779 6593 1 688 6322 109 18 3 chr3 13580222 13581199 -146018584 + L1_Mus2 LINE L1 3312 4303 -1580 1 688 3116 174 137 126 chr3 13581199 13581629 -146018154 - RMER17A2 LTR ERVK 0 906 567 1 688 301 127 0 0 chr3 13581629 13581684 -146018099 + L1_Mus1 LINE L1 6513 6567 0 1 688 3116 174 137 126 chr3 13581684 13582149 -146017634 - RMER17A2 LTR ERVK -340 566 1 1 688 10426 104 6 16 chr3 13582149 13584446 -146015337 + L1_Mus2 LINE L1 4298 6566 0 1 688 282 21 0 60 chr3 13584481 13584531 -146015252 + (TTTTG)n Simple_repeat Simple_repeat 5 51 0 1 688 502 285 123 66 chr3 13584549 13584850 -146014933 - MER67C LTR ERV1 -308 403 86 1 688 195 188 0 0 chr3 13584868 13584916 -146014867 + T-rich Low_complexity Low_complexity 1 48 0 1 688 437 195 62 47 chr3 13584916 13585045 -146014738 + URR1B DNA MER1_type 89 219 -6 1 688 2763 159 126 24 chr3 13585823 13586449 -146013334 - RMER6C LTR ERVK 0 690 1 1 688 180 0 0 0 chr3 13587347 13587367 -146012416 + (TC)n Simple_repeat Simple_repeat 2 21 0 1 688 573 55 0 0 chr3 13587367 13587439 -146012344 + (TA)n Simple_repeat Simple_repeat 2 74 0 1 688 182 220 17 0 chr3 13587822 13587881 -146011902 + GA-rich Low_complexity Low_complexity 4 63 0 1 688 279 0 0 0 chr3 13589003 13589034 -146010749 + (CA)n Simple_repeat Simple_repeat 2 32 0 1 688 414 0 0 0 chr3 13589034 13589079 -146010704 + (TA)n Simple_repeat Simple_repeat 2 47 0 1 688 329 346 31 31 chr3 13589583 13589777 -146010006 - MER110A LTR ERV1 -8 460 267 1 688 1123 325 44 67 chr3 13591290 13591888 -146007895 + Lx9 LINE L1 6022 6764 -880 1 688 1015 86 0 13 chr3 13591888 13592042 -146007741 + (TCC)n Simple_repeat Simple_repeat 3 154 0 1 688 1123 312 45 71 chr3 13592042 13592145 -146007638 + Lx9 LINE L1 6765 6850 -794 1 688 644 200 13 65 chr3 13593204 13593359 -146006424 - B1_Mus1 SINE Alu -1 147 1 1 688 717 12 0 0 chr3 13593375 13593457 -146006326 + (TTTC)n Simple_repeat Simple_repeat 3 84 0 1 688 490 265 8 8 chr3 13593543 13593661 -146006122 - B1_Mus1 SINE Alu -21 127 10 1 688 24 32 0 0 chr3 13594567 13594598 -146005185 + AT_rich Low_complexity Low_complexity 1 31 0 1 688 245 245 0 91 chr3 13595246 13595262 -146004521 - Lx9 LINE L1 -1 7643 7634 1 688 2155 76 10 3 chr3 13595262 13595554 -146004229 - L1_Mus1 LINE L1 0 6567 6274 1 688 245 245 0 91 chr3 13595554 13595658 -146004125 - Lx9 LINE L1 -11 7633 7534 1 688 268 193 140 0 chr3 13596604 13596661 -146003122 + B4A SINE B4 9 73 -219 1 688 932 41 0 8 chr3 13596763 13596887 -146002896 - B1_Mm SINE Alu -23 124 2 1 688 448 224 7 94 chr3 13596765 13596903 -146002880 - MT2B LTR ERVL -323 278 153 1 688 595 312 52 43 chr3 13597266 13597605 -146002178 + RLTR16 LTR ERVK 1 470 -58 1 688 21 0 0 0 chr3 13598060 13598081 -146001702 + AT_rich Low_complexity Low_complexity 1 21 0 1 688 405 0 0 0 chr3 13601009 13601054 -145998729 + (TG)n Simple_repeat Simple_repeat 1 45 0 1 688 385 115 0 25 chr3 13602447 13602527 -145997256 + (TA)n Simple_repeat Simple_repeat 2 79 0 1 688 348 24 0 0 chr3 13602677 13602718 -145997065 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 688 354 350 43 47 chr3 13603480 13603738 -145996045 + L1MCb LINE L1 115 371 -5674 1 688 377 285 53 5 chr3 13603876 13604063 -145995720 + L1MCb LINE L1 556 751 -5294 1 688 180 0 0 0 chr3 13604803 13604823 -145994960 + (TAAG)n Simple_repeat Simple_repeat 1 20 0 1 688 5742 185 66 51 chr3 13604882 13606076 -145993707 + L1_Mur2 LINE L1 888 2051 -3826 1 688 378 0 0 0 chr3 13606076 13606118 -145993665 + (CA)n Simple_repeat Simple_repeat 2 43 0 1 688 5742 185 89 73 chr3 13606118 13606657 -145993126 + L1_Mur2 LINE L1 2052 2630 -3247 1 688 212 0 0 35 chr3 13606657 13606686 -145993097 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 1 688 5742 185 89 73 chr3 13606686 13606973 -145992810 + L1_Mur2 LINE L1 2631 2943 -2934 1 688 621 114 17 9 chr3 13606997 13607112 -145992671 + (GGA)n Simple_repeat Simple_repeat 3 118 0 1 688 297 156 91 0 chr3 13607119 13607196 -145992587 + MusHAL1 LINE L1 1857 1940 -772 1 688 2719 212 8 0 chr3 13607200 13607709 -145992074 + Lx5 LINE L1 6259 6771 -279 1 688 25 0 0 0 chr3 13607783 13607808 -145991975 + AT_rich Low_complexity Low_complexity 1 25 0 1 688 21 36 0 0 chr3 13607897 13607925 -145991858 + AT_rich Low_complexity Low_complexity 1 28 0 1 688 349 307 75 49 chr3 13607929 13608155 -145991628 + L1MCb LINE L1 2907 3138 -3426 1 688 195 287 209 18 chr3 13608296 13608406 -145991377 - MIRb SINE MIR -25 243 113 1 688 200 125 25 0 chr3 13609895 13609935 -145989848 + (CAAAAA)n Simple_repeat Simple_repeat 1 41 0 1 688 2973 66 0 18 chr3 13610627 13611015 -145988768 - L1_Mus1 LINE L1 0 6567 6187 1 688 423 314 34 28 chr3 13612499 13612676 -145987107 + MER58A DNA MER1_type 39 216 -8 1 688 1549 167 70 7 chr3 13612813 13613191 -145986592 - Lx2 LINE L1 -352 6645 6082 1 688 1813 112 4 8 chr3 13613190 13613491 -145986292 + Lx2 LINE L1 5549 5848 -35 1 688 4371 133 67 0 chr3 13613491 13614188 -145985595 + Lx2 LINE L1 371 1114 -5502 1 688 31296 81 3 9 chr3 13614186 13618563 -145981220 + Lx2 LINE L1 1236 5586 -297 1 688 6526 109 17 14 chr3 13618563 13619555 -145980228 + L1Md_F2 LINE L1 5587 6581 -1 1 688 31296 81 3 9 chr3 13619555 13619568 -145980215 + Lx2 LINE L1 5587 5599 -284 1 688 3375 151 42 2 chr3 13619581 13620159 -145979624 + Lx2 LINE L1 5827 6427 -570 1 688 502 294 87 22 chr3 13620706 13620890 -145978893 - Lx8 LINE L1 -478 6995 6800 1 688 295 133 17 0 chr3 13621348 13621408 -145978375 + L1_Mus3 LINE L1 6576 6636 -2 1 688 894 19 0 0 chr3 13621447 13621551 -145978232 + (TTTTC)n Simple_repeat Simple_repeat 2 105 0 1 688 6383 71 9 0 chr3 13622846 13623688 -145976095 - L1Md_A LINE L1 -1 6581 5732 1 688 2270 61 30 0 chr3 13623681 13623976 -145975807 - L1_Mus2 LINE L1 -652 5914 5611 1 688 297 0 0 0 chr3 13624163 13624196 -145975587 + (TTAA)n Simple_repeat Simple_repeat 2 34 0 1 688 1039 282 43 9 chr3 13624353 13624682 -145975101 - Lx9 LINE L1 -254 7390 7051 1 688 423 0 0 0 chr3 13625350 13625397 -145974386 + (TG)n Simple_repeat Simple_repeat 1 47 0 1 688 378 0 0 0 chr3 13625397 13625438 -145974345 + (GA)n Simple_repeat Simple_repeat 1 42 0 1 688 1309 214 70 3 chr3 13626127 13626441 -145973342 - Lx9 LINE L1 -36 7608 7274 1 688 622 34 22 0 chr3 13626786 13626875 -145972908 + (TCTA)n Simple_repeat Simple_repeat 3 93 0 1 688 1729 289 48 60 chr3 13627123 13627793 -145971990 - Lx7 LINE L1 -361 7335 6674 1 688 31 0 0 0 chr3 13629050 13629081 -145970702 + AT_rich Low_complexity Low_complexity 1 31 0 1 688 23 33 0 0 chr3 13629239 13629269 -145970514 + AT_rich Low_complexity Low_complexity 1 30 0 1 688 762 308 50 59 chr3 13629514 13630219 -145969564 - L1MA4A LINE L1 -371 5929 5254 1 688 379 282 89 30 chr3 13630313 13630481 -145969302 - L1MA4A LINE L1 -923 5220 5043 1 688 375 113 0 0 chr3 13630748 13630810 -145968973 + (CA)n Simple_repeat Simple_repeat 2 63 0 1 689 276 180 0 0 chr3 13632152 13632202 -145967581 - L1VL2 LINE L1 -5843 492 443 1 689 1408 131 37 0 chr3 13632260 13632504 -145967279 + Lx2A1 LINE L1 6742 6994 -14 1 689 285 51 0 0 chr3 13632505 13632544 -145967239 + (TAAA)n Simple_repeat Simple_repeat 4 42 0 1 689 21 36 0 0 chr3 13632579 13632607 -145967176 + AT_rich Low_complexity Low_complexity 1 28 0 1 689 35 0 0 0 chr3 13632722 13632757 -145967026 + AT_rich Low_complexity Low_complexity 1 35 0 1 689 415 196 28 38 chr3 13632757 13632863 -145966920 - Lx4A LINE L1 -2 7056 6952 1 689 267 294 142 38 chr3 13633257 13633469 -145966314 - L1M2 LINE L1 -394 5897 5664 1 689 646 318 76 38 chr3 13634178 13634521 -145965262 - Lx8 LINE L1 -4 7469 7114 1 689 3366 106 81 10 chr3 13634533 13635209 -145964574 - RLTR13D4 LTR ERVK 0 1033 1 1 689 1075 311 100 21 chr3 13635219 13635738 -145964045 - Lx8 LINE L1 -388 7085 6526 1 689 195 42 0 0 chr3 13636076 13636100 -145963683 + (T)n Simple_repeat Simple_repeat 1 24 0 1 689 584 320 36 63 chr3 13636903 13637126 -145962657 + ID_B1 SINE B4 8 224 0 1 689 445 264 92 36 chr3 13637228 13637357 -145962426 - Lx8 LINE L1 -1 7472 7333 1 689 243 0 0 0 chr3 13637357 13637384 -145962399 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 689 700 299 107 30 chr3 13637384 13637787 -145961996 - Lx8 LINE L1 -141 7332 6902 1 689 1416 156 142 10 chr3 13638792 13639010 -145960773 + RMER1A Other Other 660 905 -125 1 689 405 0 0 0 chr3 13639010 13639055 -145960728 + (TTTC)n Simple_repeat Simple_repeat 3 47 0 1 689 1416 156 142 10 chr3 13639055 13639146 -145960637 + RMER1A Other Other 906 1010 -20 1 689 2536 204 33 31 chr3 13639144 13639690 -145960093 + Lx3C LINE L1 6428 6974 -2 1 689 21 0 0 0 chr3 13639930 13639951 -145959832 + AT_rich Low_complexity Low_complexity 1 21 0 1 689 226 329 38 12 chr3 13640524 13640604 -145959179 - L2a LINE L2 -2 3424 3343 1 689 640 308 75 68 chr3 13641323 13641602 -145958181 - B4A SINE B4 -6 286 6 1 689 78 22 0 0 chr3 13641799 13641891 -145957892 + AT_rich Low_complexity Low_complexity 1 92 0 1 689 603 191 0 0 chr3 13644254 13644411 -145955372 + (TG)n Simple_repeat Simple_repeat 1 157 0 2 689 252 0 0 0 chr3 13644430 13644458 -145955325 + (TA)n Simple_repeat Simple_repeat 2 29 0 2 689 22 35 0 0 chr3 13644823 13644852 -145954931 + AT_rich Low_complexity Low_complexity 1 29 0 2 689 687 140 0 0 chr3 13645187 13645344 -145954439 + (TG)n Simple_repeat Simple_repeat 2 158 0 2 689 451 153 0 20 chr3 13645744 13645844 -145953939 + (TA)n Simple_repeat Simple_repeat 1 98 0 2 689 195 69 0 0 chr3 13647072 13647101 -145952682 + (CA)n Simple_repeat Simple_repeat 2 30 0 2 689 368 211 149 58 chr3 13647493 13647567 -145952216 - Lx2A1 LINE L1 -14 6994 6908 2 689 4589 14 0 0 chr3 13647567 13648084 -145951699 - L1Md_T LINE L1 0 6582 6066 2 689 368 211 149 58 chr3 13648084 13648130 -145951653 - Lx2A1 LINE L1 -101 6907 6864 2 689 355 186 20 40 chr3 13648495 13648596 -145951187 - Lx2A1 LINE L1 -4 7004 6906 2 689 1067 240 142 27 chr3 13648577 13648896 -145950887 - Lx7 LINE L1 -48 7648 7281 2 689 333 100 0 0 chr3 13648896 13648946 -145950837 + (TTG)n Simple_repeat Simple_repeat 1 50 0 2 689 1067 240 142 27 chr3 13648946 13649071 -145950712 - Lx7 LINE L1 -416 7280 7153 2 689 689 287 10 15 chr3 13649362 13649526 -145950257 + B3A SINE B2 1 164 -34 2 689 441 36 0 0 chr3 13649526 13649581 -145950202 + (TA)n Simple_repeat Simple_repeat 2 56 0 2 689 689 287 10 15 chr3 13649581 13649614 -145950169 + B3A SINE B2 165 197 -1 2 689 687 75 0 0 chr3 13651400 13651494 -145948289 + (GGGA)n Simple_repeat Simple_repeat 4 97 0 2 689 1096 215 0 40 chr3 13652001 13652184 -145947599 + RMER10B LTR ERVL 5 185 -213 2 689 728 22 11 0 chr3 13652184 13652274 -145947509 + (TC)n Simple_repeat Simple_repeat 1 91 0 2 689 1096 215 0 40 chr3 13652274 13652362 -145947421 + RMER10B LTR ERVL 186 265 -133 2 689 551 112 0 11 chr3 13652367 13652457 -145947326 + (TCC)n Simple_repeat Simple_repeat 3 91 0 2 689 329 298 0 62 chr3 13652457 13652586 -145947197 + RMER10B LTR ERVL 198 318 -80 2 689 1071 141 236 36 chr3 13652975 13653250 -145946533 - L1_Mur3 LINE L1 -2816 3064 2735 2 689 512 15 15 0 chr3 13653260 13653325 -145946458 + (TTGG)n Simple_repeat Simple_repeat 2 67 0 2 689 331 197 42 17 chr3 13653659 13653778 -145946005 - L1_Mur3 LINE L1 -3120 2760 2639 2 689 929 186 56 51 chr3 13653817 13654032 -145945751 - ORR1C1 LTR MaLR -162 216 1 2 689 16985 113 4 74 chr3 13654819 13657235 -145942548 - L1_Mm LINE L1 0 5883 3484 2 689 321 26 0 0 chr3 13657235 13657273 -145942510 + (TTA)n Simple_repeat Simple_repeat 2 39 0 2 689 16985 113 4 74 chr3 13657273 13657808 -145941975 - L1_Mm LINE L1 -2400 3483 3139 2 689 3498 89 0 0 chr3 13657814 13658297 -145941486 + MusHAL1 LINE L1 1444 1926 -786 2 689 417 157 40 28 chr3 13658807 13658984 -145940799 + (CA)n Simple_repeat Simple_repeat 2 180 0 2 689 362 335 59 31 chr3 13659007 13659229 -145940554 + Lx8 LINE L1 6978 7205 -268 2 689 21 0 0 0 chr3 13659765 13659786 -145939997 + AT_rich Low_complexity Low_complexity 1 21 0 2 689 381 217 120 19 chr3 13659892 13660000 -145939783 + B3 SINE B2 86 204 -12 2 689 529 269 15 99 chr3 13661410 13661612 -145938171 - MTEa LTR MaLR -194 185 1 2 689 994 330 18 62 chr3 13662032 13662417 -145937366 + MTEb LTR MaLR 9 376 -3 2 689 369 0 0 0 chr3 13663533 13663574 -145936209 + (TG)n Simple_repeat Simple_repeat 2 42 0 2 689 706 291 119 32 chr3 13663611 13663955 -145935828 - Lx9 LINE L1 -212 7432 7059 2 689 537 233 112 6 chr3 13664047 13664256 -145935527 - Lx9 LINE L1 -1702 5942 5680 2 689 508 275 26 62 chr3 13664253 13664447 -145935336 + Lx9 LINE L1 5485 5671 -176 2 689 360 59 0 0 chr3 13664821 13664872 -145934911 + (TAGA)n Simple_repeat Simple_repeat 2 52 0 2 689 31 44 0 0 chr3 13666290 13666335 -145933448 + AT_rich Low_complexity Low_complexity 1 45 0 2 689 2654 143 26 2 chr3 13668494 13668950 -145930833 - Lx3B LINE L1 -3 6970 6504 2 689 192 111 0 0 chr3 13668953 13668989 -145930794 + (TTTTTG)n Simple_repeat Simple_repeat 4 39 0 2 689 181 128 0 41 chr3 13669137 13669186 -145930597 + A-rich Low_complexity Low_complexity 2 48 0 2 689 258 180 0 0 chr3 13669535 13669596 -145930187 + CT-rich Low_complexity Low_complexity 3 63 0 2 689 261 135 0 0 chr3 13670227 13670279 -145929504 + (T)n Simple_repeat Simple_repeat 1 52 0 2 689 215 93 23 0 chr3 13670306 13670349 -145929434 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 2 689 5668 130 28 46 chr3 13670395 13671687 -145928096 - Lx3B LINE L1 0 6638 5503 2 689 3300 36 8 0 chr3 13673084 13673477 -145926306 - MTA_Mm LTR MaLR 0 396 1 2 689 601 327 33 0 chr3 13673871 13674021 -145925762 + B3A SINE B2 11 165 -33 2 689 411 21 0 0 chr3 13674021 13674069 -145925714 + (CA)n Simple_repeat Simple_repeat 1 48 0 2 689 259 284 86 134 chr3 13674069 13674105 -145925678 + B2_Mm2 SINE B2 163 188 -7 2 689 363 136 0 0 chr3 13675454 13675513 -145924270 + (A)n Simple_repeat Simple_repeat 1 59 0 2 689 26 74 0 0 chr3 13676383 13676437 -145923346 + AT_rich Low_complexity Low_complexity 1 54 0 2 689 26 30 0 0 chr3 13676867 13676900 -145922883 + AT_rich Low_complexity Low_complexity 1 33 0 2 689 523 271 14 0 chr3 13677816 13677956 -145921827 + MIRc SINE MIR 126 267 -1 2 689 234 0 0 0 chr3 13680188 13680214 -145919569 + (TG)n Simple_repeat Simple_repeat 1 26 0 2 689 516 32 0 0 chr3 13680214 13680275 -145919508 + (GA)n Simple_repeat Simple_repeat 1 62 0 2 689 587 273 15 74 chr3 13680281 13680483 -145919300 - B4 SINE B4 -98 194 5 2 689 217 211 0 0 chr3 13680530 13680568 -145919215 + polypyrimidine Low_complexity Low_complexity 1 38 0 2 689 199 315 120 0 chr3 13680791 13680883 -145918900 + MIRb SINE MIR 107 209 -59 2 689 206 225 24 145 chr3 13680906 13680989 -145918794 - MIRb SINE MIR -1 267 195 2 689 1520 187 122 36 chr3 13681857 13682217 -145917566 - ORR1B1 LTR MaLR -3 391 1 2 689 218 32 0 31 chr3 13682414 13682446 -145917337 + (TTTTC)n Simple_repeat Simple_repeat 2 32 0 2 689 21 0 0 0 chr3 13683533 13683554 -145916229 + AT_rich Low_complexity Low_complexity 1 21 0 2 689 248 393 44 89 chr3 13684007 13684345 -145915438 - MLT1F2 LTR MaLR -3 557 235 2 689 26 64 0 0 chr3 13685093 13685140 -145914643 + AT_rich Low_complexity Low_complexity 1 47 0 2 689 35 41 0 0 chr3 13685553 13685602 -145914181 + AT_rich Low_complexity Low_complexity 1 49 0 2 689 28 91 0 0 chr3 13685936 13686013 -145913770 + AT_rich Low_complexity Low_complexity 1 77 0 2 689 3356 30 5 0 chr3 13686692 13687086 -145912697 + MTA_Mm LTR MaLR 1 396 0 2 689 807 314 58 0 chr3 13688408 13688666 -145911117 - B4A SINE B4 -18 274 2 2 689 216 0 0 0 chr3 13688911 13688935 -145910848 + (TTTC)n Simple_repeat Simple_repeat 3 26 0 2 689 33 43 0 0 chr3 13689376 13689423 -145910360 + AT_rich Low_complexity Low_complexity 1 47 0 2 689 5050 107 14 1 chr3 13689634 13690363 -145909420 + L1VL4 LINE L1 199 936 -5366 2 689 225 310 0 0 chr3 13690932 13690990 -145908793 + (CA)n Simple_repeat Simple_repeat 1 58 0 2 689 416 19 19 0 chr3 13691605 13691658 -145908125 + (TG)n Simple_repeat Simple_repeat 1 54 0 2 689 501 17 0 0 chr3 13691658 13691715 -145908068 + (GA)n Simple_repeat Simple_repeat 1 58 0 2 689 796 311 61 19 chr3 13692099 13692410 -145907373 - ORR1E LTR MaLR 0 359 36 2 689 891 322 61 33 chr3 13692982 13693345 -145906438 - MTE2b LTR MaLR 0 379 7 2 689 317 296 78 95 chr3 13693407 13693586 -145906197 - ORR1E LTR MaLR 0 359 184 2 689 546 167 0 0 chr3 13695009 13695141 -145904642 + CT-rich Low_complexity Low_complexity 1 132 0 2 689 327 25 0 0 chr3 13695141 13695181 -145904602 + (TG)n Simple_repeat Simple_repeat 1 40 0 2 689 258 32 0 0 chr3 13695513 13695544 -145904239 + (CCA)n Simple_repeat Simple_repeat 2 32 0 2 689 247 262 16 0 chr3 13696028 13696089 -145903694 + (CAGA)n Simple_repeat Simple_repeat 3 64 0 2 689 483 313 60 6 chr3 13696333 13696500 -145903283 + B3A SINE B2 1 176 -22 2 689 22 0 0 0 chr3 13696941 13696963 -145902820 + AT_rich Low_complexity Low_complexity 1 22 0 2 689 8049 104 5 2 chr3 13697402 13698616 -145901167 - Lx3A LINE L1 -1565 4321 3105 2 689 10279 98 21 8 chr3 13698615 13700171 -145899612 + Lx3A LINE L1 4336 5919 -1062 2 689 450 0 0 0 chr3 13700171 13700221 -145899562 + (GA)n Simple_repeat Simple_repeat 1 50 0 2 689 8780 125 33 1 chr3 13700221 13701262 -145898521 + Lx3A LINE L1 5920 6978 -3 2 689 27 0 0 0 chr3 13701262 13701289 -145898494 + AT_rich Low_complexity Low_complexity 1 27 0 2 689 411 308 55 25 chr3 13703030 13703193 -145896590 - RLTR25B LTR ERVK -860 168 1 2 689 200 289 81 32 chr3 13703442 13703549 -145896234 + MIR SINE MIR 111 218 -50 2 689 629 141 0 0 chr3 13703702 13703794 -145895989 - B2_Mm2 SINE B2 -102 93 2 2 689 1259 124 0 11 chr3 13705445 13705633 -145894150 - B2_Mm2 SINE B2 -8 187 2 2 689 207 0 0 0 chr3 13705639 13705662 -145894121 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2 689 539 248 41 34 chr3 13705669 13705815 -145893968 - B1_Mus1 SINE Alu 0 148 2 2 689 999 103 0 40 chr3 13706515 13706667 -145893116 + B1_Mus2 SINE Alu 2 147 0 2 689 195 42 0 0 chr3 13706667 13706691 -145893092 + (A)n Simple_repeat Simple_repeat 1 24 0 2 689 35 41 0 0 chr3 13706811 13706860 -145892923 + AT_rich Low_complexity Low_complexity 1 49 0 2 689 320 67 0 77 chr3 13707490 13707555 -145892228 - L1_Mus3 LINE L1 0 6638 6579 2 689 1718 227 23 36 chr3 13708039 13708423 -145891360 + Lx5 LINE L1 6670 7048 -2 2 689 34 42 0 0 chr3 13708424 13708472 -145891311 + AT_rich Low_complexity Low_complexity 1 48 0 2 689 27 29 0 0 chr3 13708622 13708656 -145891127 + AT_rich Low_complexity Low_complexity 1 34 0 2 689 530 247 177 55 chr3 13708979 13709296 -145890487 + Lx7 LINE L1 7256 7610 -86 2 689 2729 91 58 0 chr3 13709296 13709694 -145890089 - BGLII LTR ERVK 0 421 1 2 689 530 221 126 112 chr3 13709694 13709767 -145890016 + Lx7 LINE L1 7611 7686 -10 2 689 1125 135 5 10 chr3 13709767 13709961 -145889822 - B2_Mm2 SINE B2 -2 193 1 2 689 241 221 126 112 chr3 13709961 13709988 -145889795 + Lx6 LINE L1 7430 7455 -5 2 689 417 110 0 0 chr3 13711547 13711620 -145888163 + (CA)n Simple_repeat Simple_repeat 2 74 0 2 689 22 0 0 0 chr3 13711677 13711699 -145888084 + AT_rich Low_complexity Low_complexity 1 22 0 3 689 572 146 0 10 chr3 13712191 13712295 -145887488 + CT-rich Low_complexity Low_complexity 1 103 0 3 689 906 42 0 0 chr3 13712820 13712939 -145886844 + (TAGA)n Simple_repeat Simple_repeat 4 122 0 3 689 289 290 92 33 chr3 13715668 13715939 -145883844 - L1MA5 LINE L1 -302 5989 5696 3 689 237 198 22 11 chr3 13715971 13716063 -145883720 + (TA)n Simple_repeat Simple_repeat 1 93 0 3 689 242 268 36 0 chr3 13716114 13716188 -145883595 + L1M3 LINE L1 5497 5574 -609 3 689 314 247 105 12 chr3 13716190 13716276 -145883507 - B1_Mur4 SINE Alu -33 117 24 3 689 938 305 65 16 chr3 13716712 13717079 -145882704 - MLT1B LTR MaLR -5 385 1 3 689 191 32 0 61 chr3 13717097 13717130 -145882653 + (TTTTG)n Simple_repeat Simple_repeat 3 33 0 3 689 420 337 66 33 chr3 13717400 13717581 -145882202 + ID_B1 SINE B4 38 224 0 3 689 513 232 53 86 chr3 13718819 13718970 -145880813 + B4 SINE B4 68 213 -79 3 689 1007 90 0 0 chr3 13718839 13718972 -145880811 + B1_Mus1 SINE Alu 5 137 -11 3 689 207 0 0 0 chr3 13718972 13718995 -145880788 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 3 689 759 261 140 27 chr3 13719415 13719900 -145879883 - L1M2 LINE L1 -1552 4591 4052 3 689 26 30 0 0 chr3 13720435 13720468 -145879315 + AT_rich Low_complexity Low_complexity 1 33 0 3 689 1360 210 103 29 chr3 13721601 13721949 -145877834 + ORR1D1 LTR MaLR 1 374 0 3 689 314 338 28 0 chr3 13721949 13722091 -145877692 + MIR SINE MIR 113 258 -4 3 689 3509 115 21 27 chr3 13722546 13723109 -145876674 - Lx2 LINE L1 0 6997 6438 3 689 190 0 67 0 chr3 13723219 13723249 -145876534 + (TTTTTG)n Simple_repeat Simple_repeat 4 35 0 3 689 1070 95 0 7 chr3 13724049 13724197 -145875586 + B1_Mus1 SINE Alu 1 147 -1 3 689 183 336 71 45 chr3 13724257 13724369 -145875414 - MIRb SINE MIR -37 231 117 3 689 243 88 0 0 chr3 13725891 13725925 -145873858 + (TTC)n Simple_repeat Simple_repeat 2 35 0 3 689 1220 233 44 11 chr3 13728059 13728379 -145871404 + MTC LTR MaLR 27 365 -54 3 689 276 30 0 0 chr3 13728516 13728549 -145871234 + (TA)n Simple_repeat Simple_repeat 2 34 0 3 689 297 0 0 0 chr3 13728549 13728581 -145871202 + (TG)n Simple_repeat Simple_repeat 2 34 0 3 689 34 65 0 0 chr3 13729801 13729863 -145869920 + AT_rich Low_complexity Low_complexity 1 62 0 3 689 1078 76 7 0 chr3 13730735 13730879 -145868904 - B1_Mm SINE Alu 0 147 3 3 689 1183 41 7 0 chr3 13731253 13731399 -145868384 + B1_Mus1 SINE Alu 1 147 -1 3 689 238 311 93 52 chr3 13734605 13734798 -145864985 - L2 LINE L2 -1855 1564 1364 3 689 1906 54 8 0 chr3 13734965 13735204 -145864579 + L1_Mus1 LINE L1 6327 6567 0 3 689 28 0 0 0 chr3 13736269 13736297 -145863486 + AT_rich Low_complexity Low_complexity 1 28 0 3 689 525 104 0 0 chr3 13736635 13736712 -145863071 + (TTTC)n Simple_repeat Simple_repeat 4 80 0 3 689 6794 139 23 4 chr3 13736737 13738252 -145861531 - Lx LINE L1 -7 6647 5108 3 689 2740 193 6 63 chr3 13738230 13738468 -145861315 - L1VL4 LINE L1 -5474 828 599 3 689 315 34 16 63 chr3 13738468 13738531 -145861252 + (TTTG)n Simple_repeat Simple_repeat 4 63 0 3 689 2740 193 6 63 chr3 13738531 13738956 -145860827 - L1VL4 LINE L1 -5704 598 203 3 689 21 0 0 0 chr3 13739145 13739166 -145860617 + AT_rich Low_complexity Low_complexity 1 21 0 3 689 322 288 72 0 chr3 13739411 13739550 -145860233 - L1MC2 LINE L1 -144 6200 6052 3 689 527 306 91 2 chr3 13739618 13739947 -145859836 - L1MC2 LINE L1 -830 5514 5153 3 689 51 79 0 0 chr3 13740230 13740344 -145859439 + AT_rich Low_complexity Low_complexity 1 114 0 3 689 228 184 0 0 chr3 13740388 13740437 -145859346 + (CA)n Simple_repeat Simple_repeat 2 50 0 3 689 270 0 0 0 chr3 13740954 13740984 -145858799 + (TA)n Simple_repeat Simple_repeat 2 31 0 3 689 21 36 0 0 chr3 13741041 13741069 -145858714 + AT_rich Low_complexity Low_complexity 1 28 0 3 689 292 357 102 58 chr3 13741094 13741320 -145858463 - Tigger5 DNA MER2_type -2170 236 1 3 689 219 364 0 25 chr3 13742421 13742500 -145857283 - ID4_ SINE ID -5 78 2 3 689 333 313 108 31 chr3 13742724 13742907 -145856876 + HAL1-3A_ME LINE L1 2272 2438 -420 3 689 300 91 0 0 chr3 13743087 13743131 -145856652 + (T)n Simple_repeat Simple_repeat 1 44 0 3 689 7256 69 8 13 chr3 13743148 13744774 -145855009 - L1Md_F2 LINE L1 0 6582 4973 3 689 292 291 100 12 chr3 13745112 13745272 -145854511 - Lx7 LINE L1 -348 7348 7175 3 689 1213 72 0 12 chr3 13745294 13745462 -145854321 - L1Md_F2 LINE L1 -21 6561 6396 3 689 1495 68 0 5 chr3 13745456 13745649 -145854134 + L1Md_F2 LINE L1 6193 6384 -198 3 689 242 284 40 0 chr3 13745646 13745720 -145854063 - Lx7 LINE L1 -511 7185 7109 3 689 27 0 0 0 chr3 13745846 13745873 -145853910 + AT_rich Low_complexity Low_complexity 1 27 0 3 689 662 300 29 0 chr3 13746141 13746351 -145853432 - B3 SINE B2 0 216 1 3 689 458 292 45 23 chr3 13747463 13747596 -145852187 + B3 SINE B2 48 183 -33 3 689 36 23 0 0 chr3 13747622 13747665 -145852118 + AT_rich Low_complexity Low_complexity 1 43 0 3 689 270 0 0 0 chr3 13748897 13748927 -145850856 + (T)n Simple_repeat Simple_repeat 1 30 0 3 689 432 0 0 0 chr3 13751583 13751631 -145848152 + (TG)n Simple_repeat Simple_repeat 2 49 0 3 689 981 71 0 21 chr3 13752824 13752967 -145846816 - L1Md_F2 LINE L1 -12 6570 6431 3 689 22 0 0 0 chr3 13753142 13753164 -145846619 + AT_rich Low_complexity Low_complexity 1 22 0 3 689 267 79 0 0 chr3 13753452 13753490 -145846293 + (CAAAA)n Simple_repeat Simple_repeat 3 40 0 3 689 543 31 0 0 chr3 13754222 13754287 -145845496 + (CA)n Simple_repeat Simple_repeat 2 66 0 3 689 23 33 0 0 chr3 13754407 13754437 -145845346 + AT_rich Low_complexity Low_complexity 1 30 0 3 689 1537 296 35 33 chr3 13754539 13755021 -145844762 + Lx5 LINE L1 6507 6989 -61 3 689 279 247 0 0 chr3 13755803 13755892 -145843891 + (TG)n Simple_repeat Simple_repeat 2 90 0 3 689 793 54 9 9 chr3 13758387 13758499 -145841284 + (TTCTC)n Simple_repeat Simple_repeat 2 113 0 3 689 24 0 0 0 chr3 13759812 13759836 -145839947 + AT_rich Low_complexity Low_complexity 1 24 0 3 689 21 0 0 0 chr3 13759847 13759868 -145839915 + AT_rich Low_complexity Low_complexity 1 21 0 3 689 331 282 279 13 chr3 13759871 13760029 -145839754 - B3 SINE B2 -14 202 3 3 689 333 0 0 0 chr3 13760667 13760704 -145839079 + (TG)n Simple_repeat Simple_repeat 2 38 0 3 689 438 287 41 8 chr3 13760710 13760833 -145838950 - RSINE1 SINE B4 -13 152 26 3 689 265 393 62 0 chr3 13761619 13761764 -145838019 - MLT1A1 LTR MaLR -14 394 241 3 689 243 0 0 0 chr3 13761837 13761864 -145837919 + (TG)n Simple_repeat Simple_repeat 2 28 0 3 689 467 349 66 5 chr3 13761928 13762124 -145837659 - B4A SINE B4 -79 213 6 3 690 946 256 5 0 chr3 13764290 13764505 -145835278 - B3 SINE B2 0 216 1 3 690 6195 32 0 0 chr3 13765325 13766050 -145833733 - L1Md_T LINE L1 0 6582 5858 3 690 692 347 32 95 chr3 13766162 13766563 -145833220 - MTEa LTR MaLR -3 376 1 3 690 4232 188 78 11 chr3 13766741 13767574 -145832209 - Lx4A LINE L1 0 7058 6164 3 690 21 57 0 0 chr3 13767651 13767686 -145832097 + AT_rich Low_complexity Low_complexity 1 35 0 3 690 21 57 0 0 chr3 13768601 13768636 -145831147 + AT_rich Low_complexity Low_complexity 1 35 0 3 690 567 236 7 14 chr3 13768644 13768790 -145830993 + B1_Mus1 SINE Alu 2 146 -2 3 690 22 0 0 0 chr3 13769448 13769470 -145830313 + AT_rich Low_complexity Low_complexity 1 22 0 3 690 548 65 0 13 chr3 13769516 13769594 -145830189 + (TA)n Simple_repeat Simple_repeat 2 78 0 3 690 729 269 3 96 chr3 13769634 13769967 -145829816 + Lx9 LINE L1 7336 7637 -7 3 690 229 172 69 0 chr3 13770114 13770206 -145829577 + (CATATA)n Simple_repeat Simple_repeat 1 98 0 3 690 336 214 8 104 chr3 13770206 13770331 -145829452 - Lx9 LINE L1 -127 7517 7405 3 690 280 262 154 10 chr3 13770469 13770573 -145829210 - Lx9 LINE L1 -478 7166 7048 3 690 295 272 254 50 chr3 13770713 13770953 -145828830 - B4A SINE B4 0 292 4 3 690 978 316 82 40 chr3 13771034 13771387 -145828396 + MTEa LTR MaLR 1 368 -11 3 690 441 0 0 0 chr3 13771387 13771436 -145828347 + (GA)n Simple_repeat Simple_repeat 1 49 0 3 690 1133 205 65 11 chr3 13771566 13771828 -145827955 - Lx4A LINE L1 -876 6182 5907 3 690 1791 189 6 0 chr3 13771833 13772155 -145827628 + Lx4A LINE L1 6170 6493 -565 3 690 801 31 0 0 chr3 13772187 13772283 -145827500 + (TC)n Simple_repeat Simple_repeat 1 96 0 3 690 299 331 0 38 chr3 13772992 13773124 -145826659 - MER3 DNA MER1_type -41 168 42 3 690 200 59 0 29 chr3 13773418 13773453 -145826330 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 3 690 3782 188 22 4 chr3 13773856 13774571 -145825212 - Lx4A LINE L1 0 7058 6331 3 690 450 0 0 0 chr3 13774764 13774814 -145824969 + (TA)n Simple_repeat Simple_repeat 2 51 0 3 690 21 71 0 0 chr3 13776673 13776715 -145823068 + AT_rich Low_complexity Low_complexity 1 42 0 3 690 23 0 0 0 chr3 13777699 13777722 -145822061 + AT_rich Low_complexity Low_complexity 1 23 0 3 690 2203 70 3 3 chr3 13778019 13778307 -145821476 - L1_Mus2 LINE L1 0 6566 6279 3 690 587 28 0 0 chr3 13778307 13778379 -145821404 + L1_Mus2 LINE L1 6217 6288 -278 3 690 27 0 0 0 chr3 13779847 13779874 -145819909 + AT_rich Low_complexity Low_complexity 1 27 0 3 690 1065 70 0 0 chr3 13779966 13780109 -145819674 + (TTTC)n Simple_repeat Simple_repeat 2 144 0 3 690 190 389 46 43 chr3 13780432 13780714 -145819069 - L2 LINE L2 -812 2607 2325 3 690 259 200 0 0 chr3 13781272 13781317 -145818466 - RMER15 LTR ERVL -448 127 83 3 690 598 254 42 21 chr3 13781320 13781509 -145818274 - RMER15 LTR ERVL -104 471 279 3 690 2471 88 6 3 chr3 13781855 13782208 -145817575 - L1_Mus4 LINE L1 -3 6633 6280 3 690 455 0 0 18 chr3 13782220 13782276 -145817507 + (TTA)n Simple_repeat Simple_repeat 2 56 0 4 690 318 335 7 20 chr3 13782728 13782880 -145816903 - Tigger7 DNA MER2_type -23 2468 2319 4 690 423 0 0 0 chr3 13783191 13783238 -145816545 + (TC)n Simple_repeat Simple_repeat 1 47 0 4 690 330 45 0 0 chr3 13783239 13783283 -145816500 + (TG)n Simple_repeat Simple_repeat 2 45 0 4 690 832 211 23 28 chr3 13783299 13783513 -145816270 - RMER1A Other Other -2 1028 816 4 690 21 36 0 0 chr3 13784217 13784245 -145815538 + AT_rich Low_complexity Low_complexity 1 28 0 4 690 240 35 0 0 chr3 13784286 13784315 -145815468 + (TTAA)n Simple_repeat Simple_repeat 1 29 0 4 690 5365 111 19 18 chr3 13784413 13785256 -145814527 - Lx3A LINE L1 -224 6757 5914 4 690 420 20 0 0 chr3 13785738 13785787 -145813996 + (CAATA)n Simple_repeat Simple_repeat 2 50 0 4 690 761 315 37 107 chr3 13786381 13786783 -145813000 + ORR1D1 LTR MaLR 1 374 0 4 690 24 0 0 0 chr3 13787979 13788003 -145811780 + AT_rich Low_complexity Low_complexity 1 24 0 4 690 376 128 26 0 chr3 13789004 13789082 -145810701 + (TTATA)n Simple_repeat Simple_repeat 5 84 0 4 690 531 69 0 0 chr3 13790127 13790199 -145809584 + (CTA)n Simple_repeat Simple_repeat 1 72 0 4 690 3883 92 0 20 chr3 13790199 13790754 -145809029 - L1Md_F2 LINE L1 -15 6567 6024 4 690 2316 138 35 60 chr3 13790754 13791241 -145808542 - IAPLTR2_Mm LTR ERVK 0 475 1 4 690 20895 16 2 2 chr3 13791241 13793599 -145806184 - IAPEz-int LTR ERVK 0 6481 4123 4 690 932 73 24 0 chr3 13793601 13793724 -145806059 - IAPEz-int LTR ERVK -2770 4910 4785 4 690 1811 119 4 4 chr3 13793721 13793983 -145805800 - IAPEz-int LTR ERVK -5183 2497 2236 4 690 442 66 0 32 chr3 13793972 13794035 -145805748 - IAPEz-int LTR ERVK -5062 1419 1359 4 690 4799 66 4 33 chr3 13794035 13794722 -145805061 - IAPEz-int LTR ERVK -5819 662 3 4 690 2316 138 35 60 chr3 13794724 13795211 -145804572 - IAPLTR2_Mm LTR ERVK 0 475 1 4 690 32790 85 11 5 chr3 13795211 13799243 -145800540 - L1Md_F2 LINE L1 -553 6029 1971 4 690 270 56 0 0 chr3 13799243 13799279 -145800504 + (TTTTG)n Simple_repeat Simple_repeat 4 39 0 4 690 32790 111 24 9 chr3 13799279 13800845 -145798938 - L1Md_F2 LINE L1 -3913 1970 384 4 690 224 311 87 43 chr3 13801434 13801572 -145798211 + MIR SINE MIR 52 195 -67 4 690 26 0 0 0 chr3 13801677 13801703 -145798080 + AT_rich Low_complexity Low_complexity 1 26 0 4 690 22 0 0 0 chr3 13802052 13802074 -145797709 + AT_rich Low_complexity Low_complexity 1 22 0 4 690 205 88 0 29 chr3 13802154 13802189 -145797594 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 4 690 447 160 0 0 chr3 13802321 13802415 -145797368 + (TA)n Simple_repeat Simple_repeat 2 95 0 4 690 2138 233 40 14 chr3 13802752 13803327 -145796456 + RCHARR1 DNA MER1_type 352 941 -33 4 690 217 245 0 19 chr3 13803521 13803575 -145796208 + CT-rich Low_complexity Low_complexity 2 54 0 4 690 22 70 0 0 chr3 13804213 13804256 -145795527 + AT_rich Low_complexity Low_complexity 1 43 0 4 690 381 264 97 45 chr3 13804376 13804531 -145795252 + B3 SINE B2 2 164 -52 4 690 22 56 0 0 chr3 13804581 13804617 -145795166 + AT_rich Low_complexity Low_complexity 1 36 0 4 690 587 232 30 15 chr3 13804892 13805066 -145794717 - L1_Mur3 LINE L1 -3 5877 5725 4 690 1526 191 6 28 chr3 13805442 13805760 -145794023 - RMER1C Other Other -1 1341 1031 4 690 7441 92 9 2 chr3 13806225 13807241 -145792542 - RLTR13D5 LTR ERVK 0 1023 1 4 690 297 145 0 0 chr3 13807466 13807528 -145792255 + (TC)n Simple_repeat Simple_repeat 2 63 0 4 690 223 171 0 0 chr3 13807529 13807570 -145792213 + (CA)n Simple_repeat Simple_repeat 2 42 0 4 690 508 318 8 0 chr3 13810394 13810523 -145789260 - RSINE1 SINE B4 -25 140 11 4 690 258 182 0 0 chr3 13810555 13810621 -145789162 + (CA)n Simple_repeat Simple_repeat 1 66 0 4 690 239 0 32 0 chr3 13811385 13811416 -145788367 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 4 690 6075 151 37 12 chr3 13811433 13812489 -145787294 - Lx2 LINE L1 0 6997 5916 4 690 243 0 0 0 chr3 13813744 13813771 -145786012 + (CA)n Simple_repeat Simple_repeat 2 28 0 4 690 444 19 0 0 chr3 13813790 13813843 -145785940 + (GA)n Simple_repeat Simple_repeat 2 54 0 4 690 261 75 0 0 chr3 13814221 13814261 -145785522 + (CAAA)n Simple_repeat Simple_repeat 2 41 0 4 690 260 281 68 0 chr3 13815186 13815332 -145784451 + L1MA8 LINE L1 6003 6158 -133 4 690 397 319 25 96 chr3 13816068 13816266 -145783517 - B3 SINE B2 -27 189 6 4 690 186 103 0 0 chr3 13817404 13817433 -145782350 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 4 690 1026 129 0 0 chr3 13817720 13817875 -145781908 - Lx LINE L1 -641 5995 5841 4 690 3574 127 60 27 chr3 13817875 13818514 -145781269 + Lx LINE L1 5979 6638 -16 4 690 255 61 0 0 chr3 13818683 13818716 -145781067 + (TA)n Simple_repeat Simple_repeat 1 33 0 4 690 346 298 70 7 chr3 13818806 13818948 -145780835 - MLT1A0 LTR MaLR -207 158 8 4 690 3818 66 0 21 chr3 13819151 13819663 -145780120 + L1Md_F2 LINE L1 6081 6581 -1 4 690 306 0 0 0 chr3 13820608 13820642 -145779141 + (TG)n Simple_repeat Simple_repeat 1 34 0 4 690 193 252 68 0 chr3 13820790 13820864 -145778919 + MIR SINE MIR 113 201 -67 4 690 189 0 0 0 chr3 13821041 13821062 -145778721 + (A)n Simple_repeat Simple_repeat 1 21 0 4 690 556 189 0 0 chr3 13821165 13821255 -145778528 + B3A SINE B2 3 92 -106 4 690 2826 25 5 64 chr3 13821263 13821653 -145778130 - IAPLTR1_Mm LTR ERVK 0 367 1 4 690 28717 22 1 2 chr3 13821653 13824930 -145774853 - IAPEz-int LTR ERVK 0 6481 3210 4 690 7446 93 95 22 chr3 13824929 13826146 -145773637 - IAPEz-int LTR ERVK -5168 1313 8 4 690 2826 25 5 64 chr3 13826146 13826536 -145773247 - IAPLTR1_Mm LTR ERVK 0 367 1 4 690 200 184 0 20 chr3 13826613 13826663 -145773120 + (CATATA)n Simple_repeat Simple_repeat 1 49 0 4 690 21 0 0 0 chr3 13827242 13827263 -145772520 + AT_rich Low_complexity Low_complexity 1 21 0 4 690 419 294 184 40 chr3 13827339 13827562 -145772221 - B4A SINE B4 -36 256 2 4 690 2149 126 6 15 chr3 13827813 13828143 -145771640 - ORR1A2 LTR MaLR 0 327 1 4 690 257 222 0 0 chr3 13829042 13829114 -145770669 + T-rich Low_complexity Low_complexity 1 72 0 4 690 1233 48 0 0 chr3 13829115 13829261 -145770522 - B1_Mus1 SINE Alu -1 147 2 4 690 335 307 73 0 chr3 13829330 13829467 -145770316 - L1MEg LINE L1 -4134 1950 1804 4 690 539 283 72 0 chr3 13829488 13829626 -145770157 - B1_Mus1 SINE Alu 0 148 1 4 690 349 349 52 19 chr3 13829626 13829643 -145770140 - ID_B1 SINE B4 0 224 65 4 690 21 0 0 0 chr3 13830072 13830093 -145769690 + AT_rich Low_complexity Low_complexity 1 21 0 4 690 253 81 129 0 chr3 13830679 13830741 -145769042 + (TTGG)n Simple_repeat Simple_repeat 2 71 0 4 690 249 256 63 13 chr3 13831430 13831509 -145768274 + B4 SINE B4 2 84 -208 4 690 1550 315 40 40 chr3 13832057 13832802 -145766981 + Lx9 LINE L1 6729 7473 -171 4 690 459 0 0 0 chr3 13832955 13833006 -145766777 + (TA)n Simple_repeat Simple_repeat 1 51 0 4 690 456 324 133 43 chr3 13833006 13833306 -145766477 - MLT1A0 LTR MaLR -34 331 5 4 690 256 93 130 0 chr3 13833325 13833379 -145766404 - Lx2 LINE L1 0 6997 6937 4 690 303 85 0 0 chr3 13833381 13833428 -145766355 + (T)n Simple_repeat Simple_repeat 1 47 0 4 690 1020 85 14 14 chr3 13833431 13833574 -145766209 - B1_Mus2 SINE Alu 0 147 5 4 690 272 278 57 45 chr3 13833687 13833813 -145765970 - MLT1A1 LTR MaLR -243 131 8 4 690 292 323 109 40 chr3 13833848 13834022 -145765761 + MIRc SINE MIR 32 217 -51 4 690 352 0 42 0 chr3 13834471 13834519 -145765264 + (TTTTTG)n Simple_repeat Simple_repeat 4 53 0 4 690 288 77 0 0 chr3 13834663 13834702 -145765081 + (TTTC)n Simple_repeat Simple_repeat 2 40 0 4 690 180 186 0 48 chr3 13834723 13834785 -145764998 + (TTTG)n Simple_repeat Simple_repeat 2 60 0 4 690 22 0 0 0 chr3 13834948 13834970 -145764813 + AT_rich Low_complexity Low_complexity 1 22 0 4 690 5373 67 0 0 chr3 13836226 13836910 -145762873 - L1_Mus1 LINE L1 -1 6566 5883 4 690 4204 99 3 0 chr3 13836910 13837486 -145762297 + L1_Mus1 LINE L1 5276 5853 -30 4 690 378 0 0 0 chr3 13842021 13842063 -145757720 + (TG)n Simple_repeat Simple_repeat 2 43 0 4 690 650 285 122 52 chr3 13842909 13843335 -145756448 - Lx8 LINE L1 -2 7471 7016 4 690 871 125 0 56 chr3 13843344 13843505 -145756278 - L1Md_F3 LINE L1 -2 6582 6431 4 690 3303 50 0 2 chr3 13843505 13843904 -145755879 + L1_Mus1 LINE L1 6047 6444 -123 4 690 731 263 176 7 chr3 13843898 13844170 -145755613 - Lx8 LINE L1 -451 7022 6705 4 690 198 0 0 0 chr3 13844561 13844583 -145755200 + (A)n Simple_repeat Simple_repeat 1 22 0 4 690 230 336 42 33 chr3 13844968 13845088 -145754695 - MER33 DNA MER1_type -197 127 7 4 690 603 348 49 9 chr3 13845687 13845913 -145753870 + 7SK RNA RNA 3 237 -94 4 690 3012 48 5 0 chr3 13847940 13848316 -145751467 - L1Md_F2 LINE L1 0 6582 6205 4 690 220 329 137 0 chr3 13849292 13849365 -145750418 - PB1 SINE Alu -21 106 24 4 690 240 59 0 0 chr3 13849374 13849408 -145750375 + (A)n Simple_repeat Simple_repeat 1 34 0 4 690 3541 174 42 9 chr3 13849411 13850061 -145749722 - RLTR17 LTR ERVK -21 671 1 4 690 3051 236 107 23 chr3 13850327 13851191 -145748592 - RMER19B LTR ERVK -2 900 3 4 690 204 163 0 0 chr3 13852616 13852659 -145747124 + (TA)n Simple_repeat Simple_repeat 1 43 0 4 690 399 316 19 76 chr3 13854838 13854976 -145744807 + B1F2 SINE Alu 1 129 -20 4 690 234 91 0 0 chr3 13855604 13855637 -145744146 + (TA)n Simple_repeat Simple_repeat 2 34 0 4 690 334 336 91 32 chr3 13855865 13856117 -145743666 - Lx8 LINE L1 -4 7469 7203 4 690 439 290 71 56 chr3 13857042 13857239 -145742544 - MLT1C LTR MaLR 0 467 268 4 690 293 82 20 0 chr3 13857291 13857340 -145742443 + (TG)n Simple_repeat Simple_repeat 2 51 0 4 690 399 21 0 0 chr3 13857449 13857497 -145742286 + (TG)n Simple_repeat Simple_repeat 2 49 0 4 690 202 176 19 19 chr3 13857558 13857610 -145742173 + A-rich Low_complexity Low_complexity 5 56 0 4 690 204 40 0 0 chr3 13857991 13858016 -145741767 + (TC)n Simple_repeat Simple_repeat 1 25 0 4 690 243 0 0 0 chr3 13858125 13858152 -145741631 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 4 690 2763 164 258 35 chr3 13858165 13858948 -145740835 + RMER17B LTR ERVK 1 958 0 4 690 1693 258 40 40 chr3 13859091 13859640 -145740143 + Lx7 LINE L1 6295 6843 -853 4 690 267 293 174 32 chr3 13860878 13861033 -145738750 + Cheshire DNA MER1_type 51 227 -2193 5 690 459 333 101 55 chr3 13861417 13861763 -145738020 + ORR1D2 LTR MaLR 8 369 -1 5 690 23 68 0 0 chr3 13862170 13862214 -145737569 + AT_rich Low_complexity Low_complexity 1 44 0 5 690 342 0 0 0 chr3 13862243 13862281 -145737502 + (GA)n Simple_repeat Simple_repeat 2 39 0 5 690 204 97 0 0 chr3 13863310 13863341 -145736442 + (CA)n Simple_repeat Simple_repeat 2 32 0 5 690 695 144 6 0 chr3 13863342 13863509 -145736274 + (GA)n Simple_repeat Simple_repeat 1 168 0 5 690 618 14 0 0 chr3 13864977 13865048 -145734735 + (TAGA)n Simple_repeat Simple_repeat 4 74 0 5 690 421 276 48 21 chr3 13865140 13865329 -145734454 - Lx9 LINE L1 -151 7493 7300 5 690 343 222 42 53 chr3 13865356 13865443 -145734340 - Lx9 LINE L1 -451 7193 7105 5 690 702 24 0 0 chr3 13865443 13865527 -145734256 + (TTCC)n Simple_repeat Simple_repeat 3 86 0 5 690 223 227 0 0 chr3 13865534 13865578 -145734205 + CT-rich Low_complexity Low_complexity 3 46 0 5 690 213 94 0 0 chr3 13867075 13867107 -145732676 + (CAT)n Simple_repeat Simple_repeat 1 32 0 5 690 366 184 0 0 chr3 13867154 13867230 -145732553 + CT-rich Low_complexity Low_complexity 1 76 0 5 690 270 164 52 52 chr3 13869379 13869437 -145730346 - RMER15-int LTR ERVL -577 4422 4365 5 690 2797 167 56 61 chr3 13869851 13870655 -145729128 - RLTR13C1 LTR ERVK 0 808 1 5 690 5868 201 47 51 chr3 13870668 13872060 -145727723 - ETnERV3-int LTR ERVK -24 5784 4399 5 690 4098 136 34 17 chr3 13872069 13872834 -145726949 - ETnERV3-int LTR ERVK -3932 3474 2697 5 690 369 0 0 0 chr3 13872967 13873008 -145726775 + (TTG)n Simple_repeat Simple_repeat 2 42 0 5 690 1202 147 0 0 chr3 13874053 13874244 -145725539 - ORR1A4 LTR MaLR -8 321 131 5 690 2993 42 3 0 chr3 13874487 13874843 -145724940 - IAPEY2_LTR LTR ERVK 0 357 1 5 690 305 260 99 66 chr3 13875213 13875394 -145724389 - RLTR16 LTR ERVK -291 214 28 5 690 688 329 77 9 chr3 13875931 13876164 -145723619 - B4A SINE B4 -43 249 1 5 690 25 31 0 0 chr3 13876315 13876347 -145723436 + AT_rich Low_complexity Low_complexity 1 32 0 5 690 23 33 0 0 chr3 13876673 13876703 -145723080 + AT_rich Low_complexity Low_complexity 1 30 0 5 690 285 333 73 26 chr3 13877472 13877623 -145722160 - MLT1E2 LTR MaLR -444 183 26 5 690 216 307 13 39 chr3 13877870 13877948 -145721835 - L3 LINE CR1 -451 4038 3963 5 690 495 315 8 0 chr3 13877988 13878118 -145721665 - B3 SINE B2 -10 206 76 5 690 273 135 0 0 chr3 13878815 13878867 -145720916 + (TTTTC)n Simple_repeat Simple_repeat 2 53 0 5 690 989 149 6 0 chr3 13878869 13879044 -145720739 + CT-rich Low_complexity Low_complexity 3 178 0 5 690 210 71 0 0 chr3 13879239 13879267 -145720516 + (T)n Simple_repeat Simple_repeat 1 28 0 5 690 967 246 126 13 chr3 13879491 13879808 -145719975 + Lx3C LINE L1 6621 6973 -3 5 690 460 208 0 33 chr3 13879815 13879943 -145719840 - RLTR26 LTR ERVK -693 116 1 5 690 3279 171 5 12 chr3 13879945 13880518 -145719265 - RMER12B LTR ERVK -835 569 1 5 690 1241 68 0 0 chr3 13881098 13881261 -145718522 - L1Md_T LINE L1 -1 6581 6419 5 690 22 0 0 0 chr3 13881265 13881287 -145718496 + AT_rich Low_complexity Low_complexity 1 22 0 5 690 699 334 13 11 chr3 13881571 13881793 -145717990 + B3A SINE B2 1 215 -1 5 690 472 30 15 15 chr3 13881891 13881958 -145717825 + (TAGA)n Simple_repeat Simple_repeat 4 70 0 5 690 1469 251 63 6 chr3 13882359 13882723 -145717060 - MTC LTR MaLR 0 421 37 5 690 587 240 45 4 chr3 13882844 13883069 -145716714 + RMER19B LTR ERVK 6 180 -722 5 690 5846 75 15 17 chr3 13883070 13883882 -145715901 - L1Md_F2 LINE L1 0 6582 5773 5 690 2644 37 6 39 chr3 13883882 13884220 -145715563 - IAPLTR2b LTR ERVK 0 327 1 5 690 5032 65 15 49 chr3 13884222 13884936 -145714847 - IAPEz-int LTR ERVK -2 6479 5790 5 690 23328 26 0 0 chr3 13884975 13888405 -145711378 - L1Md_A LINE L1 0 6582 3152 5 690 1180 72 0 0 chr3 13888405 13888558 -145711225 - IAPEz-int LTR ERVK -678 5803 5651 5 690 2618 76 0 3 chr3 13888551 13888894 -145710889 - IAPEz-int LTR ERVK -4781 1700 1359 5 690 4536 74 26 30 chr3 13888894 13889551 -145710232 - IAPEz-int LTR ERVK -5819 662 9 5 690 2684 31 6 39 chr3 13889552 13889890 -145709893 - IAPLTR2b LTR ERVK 0 327 1 5 690 21726 179 14 57 chr3 13889890 13891686 -145708097 - L1_Mur1 LINE L1 -105 5781 4156 5 690 351 65 0 0 chr3 13891686 13891732 -145708051 + (CA)n Simple_repeat Simple_repeat 1 46 0 5 690 21726 179 14 57 chr3 13891732 13892997 -145706786 - L1_Mur1 LINE L1 -1731 4155 2948 5 690 2805 57 2 108 chr3 13892997 13893431 -145706352 + RLTR10 LTR ERVK 1 388 -2 5 86 21726 179 14 57 chr3 13893431 13895155 -145704628 - L1_Mur1 LINE L1 -2939 2947 1203 5 691 2943 216 62 32 chr3 13895123 13895939 -145703844 - L1Md_F LINE L1 -5382 1137 297 5 691 32 0 0 0 chr3 13896643 13896675 -145703108 + AT_rich Low_complexity Low_complexity 1 32 0 5 691 495 0 0 0 chr3 13899999 13900054 -145699729 + (TC)n Simple_repeat Simple_repeat 2 56 0 5 691 477 34 0 0 chr3 13900054 13900112 -145699671 + (TG)n Simple_repeat Simple_repeat 2 60 0 5 691 3107 81 2 27 chr3 13900200 13900644 -145699139 - L1Md_F2 LINE L1 -19 6563 6131 5 691 9148 72 2 0 chr3 13900644 13901954 -145697829 - L1Md_F2 LINE L1 -588 5994 4681 5 691 4052 142 129 27 chr3 13901927 13902845 -145696938 - L1Md_F2 LINE L1 -5400 1238 237 5 691 22 0 0 0 chr3 13903273 13903295 -145696488 + AT_rich Low_complexity Low_complexity 1 22 0 5 691 249 240 26 13 chr3 13903859 13903935 -145695848 + CT-rich Low_complexity Low_complexity 2 78 0 5 691 1069 125 62 0 chr3 13904025 13904201 -145695582 + B2_Mm2 SINE B2 3 189 -6 5 691 4762 68 2 2 chr3 13904202 13904817 -145694966 + L1_Mus1 LINE L1 5952 6566 -1 5 691 580 122 0 0 chr3 13905246 13905336 -145694447 - RLTR15 LTR ERVK 0 359 270 5 691 302 203 16 0 chr3 13905333 13905397 -145694386 + RMER6D LTR ERVK 49 113 -607 5 691 411 208 0 0 chr3 13905423 13905500 -145694283 - RLTR23 LTR ERV1 -346 84 8 5 691 859 212 127 31 chr3 13905494 13905723 -145694060 + MTC LTR MaLR 170 420 -1 5 691 300 351 0 11 chr3 13905723 13905807 -145693976 - B1_Mur2 SINE Alu -66 83 1 5 691 1004 332 25 20 chr3 13905862 13906218 -145693565 + MTE2b LTR MaLR 1 358 -21 5 691 227 344 51 6 chr3 13906300 13906458 -145693325 - L1MC5 LINE L1 -750 7211 7047 5 691 2302 42 17 0 chr3 13906641 13906929 -145692854 - L1Md_F2 LINE L1 0 6582 6290 5 691 253 222 48 0 chr3 13907028 13907091 -145692692 - Tigger5 DNA MER2_type -2098 308 243 5 691 189 312 77 13 chr3 13907207 13907285 -145692498 - L4 LINE RTE -1285 744 662 5 691 7521 76 8 1 chr3 13907616 13908909 -145690874 - L1_Mus1 LINE L1 -2 6565 5263 5 691 1146 332 91 13 chr3 13908979 13909507 -145690276 + Lx6 LINE L1 6451 7019 -441 5 691 7731 168 7 42 chr3 13909522 13910455 -145689328 + L1_Mm LINE L1 4104 5013 -870 5 691 1264 108 11 0 chr3 13910455 13910641 -145689142 + B2_Mm1a SINE B2 3 190 -3 5 691 7731 168 7 42 chr3 13910641 13911219 -145688564 + L1_Mm LINE L1 5014 5562 -321 5 691 431 113 0 14 chr3 13912032 13912104 -145687679 + (GGA)n Simple_repeat Simple_repeat 3 73 0 5 691 24 32 0 0 chr3 13912133 13912164 -145687619 + AT_rich Low_complexity Low_complexity 1 31 0 5 691 26 88 0 0 chr3 13912202 13912270 -145687513 + AT_rich Low_complexity Low_complexity 1 68 0 5 691 24 0 0 0 chr3 13912455 13912479 -145687304 + AT_rich Low_complexity Low_complexity 1 24 0 5 691 306 318 27 0 chr3 13912664 13912774 -145687009 + Lx8 LINE L1 7022 7134 -339 5 691 342 0 0 0 chr3 13914345 13914383 -145685400 + (TG)n Simple_repeat Simple_repeat 2 39 0 5 691 203 0 37 0 chr3 13914579 13914606 -145685177 + (TTG)n Simple_repeat Simple_repeat 3 30 0 5 691 640 186 24 0 chr3 13914776 13914900 -145684883 - Lx9 LINE L1 -281 7363 7237 5 691 628 204 57 39 chr3 13914896 13915126 -145684657 + Lx9 LINE L1 7389 7622 -22 5 691 276 224 0 0 chr3 13916089 13916156 -145683627 + (TA)n Simple_repeat Simple_repeat 1 67 0 5 691 399 244 0 0 chr3 13916167 13916282 -145683501 + GA-rich Low_complexity Low_complexity 6 120 0 5 691 225 273 107 0 chr3 13916602 13916723 -145683060 + L1MA9 LINE L1 4870 5003 -1140 5 691 496 91 0 0 chr3 13916752 13916818 -145682965 + L1_Mus2 LINE L1 5612 5677 -889 5 691 414 0 0 0 chr3 13916818 13916864 -145682919 + (TTTA)n Simple_repeat Simple_repeat 2 47 0 5 691 1142 84 0 0 chr3 13917574 13917729 -145682054 + B2_Mm2 SINE B2 1 155 -40 5 691 3555 53 4 0 chr3 13917729 13918182 -145681601 + L1_Mus2 LINE L1 5622 6076 -490 5 691 828 321 48 65 chr3 13918569 13919348 -145680435 + L1MA9 LINE L1 5548 6312 0 5 691 228 281 13 94 chr3 13920501 13920650 -145679133 + L1M5 LINE L1 3681 3817 -2329 5 691 587 371 89 32 chr3 13921267 13922007 -145677776 + L1M5 LINE L1 4550 5331 -815 5 691 283 207 34 22 chr3 13922036 13922125 -145677658 + L1MD LINE L1 5397 5486 -873 5 691 844 228 11 27 chr3 13922129 13922314 -145677469 + B2_Mm2 SINE B2 4 185 -10 5 691 37 23 0 0 chr3 13922314 13922358 -145677425 + AT_rich Low_complexity Low_complexity 1 44 0 5 691 3436 228 49 42 chr3 13922606 13923844 -145675939 - Lx5 LINE L1 -138 6912 5623 5 691 13869 140 12 16 chr3 13923845 13926256 -145673527 - L1_Mm LINE L1 -884 4999 2599 5 691 461 130 11 0 chr3 13926313 13926405 -145673378 + L1_Mus4 LINE L1 6538 6630 -6 5 691 315 135 19 0 chr3 13926434 13926486 -145673297 - Lx5 LINE L1 -314 5563 5511 5 691 773 67 0 32 chr3 13926888 13927012 -145672771 + L1Md_F2 LINE L1 6460 6579 -3 5 691 321 303 139 62 chr3 13927368 13927576 -145672207 + MLT1D LTR MaLR 127 350 -155 5 691 477 359 11 42 chr3 13927596 13927785 -145671998 + B3A SINE B2 2 184 -14 5 691 446 245 68 30 chr3 13928059 13928302 -145671481 + L1M3 LINE L1 3606 3869 -2011 5 691 650 56 22 0 chr3 13928302 13928392 -145671391 + (TTTC)n Simple_repeat Simple_repeat 2 93 0 5 691 38 61 0 0 chr3 13928405 13928471 -145671312 + AT_rich Low_complexity Low_complexity 1 66 0 5 691 186 191 0 0 chr3 13928534 13928576 -145671207 + A-rich Low_complexity Low_complexity 1 42 0 5 691 417 296 36 24 chr3 13928636 13928802 -145670981 - Lx7 LINE L1 -332 7364 7197 5 691 831 325 30 26 chr3 13928883 13929186 -145670597 - Lx6 LINE L1 -169 7291 6988 5 691 1048 180 69 18 chr3 13929188 13929493 -145670290 - Lx2 LINE L1 0 6997 6729 5 691 1909 188 95 5 chr3 13929490 13929913 -145669870 - L1_Mur3 LINE L1 -7 5873 5413 5 691 3812 104 7 4 chr3 13929909 13930450 -145669333 + L1_Mus3 LINE L1 6026 6568 -70 5 691 683 65 0 0 chr3 13930445 13930538 -145669245 + MusHAL1 LINE L1 339 431 -2281 5 691 7056 98 3 11 chr3 13930531 13931584 -145668199 + L1_Mus2 LINE L1 5522 6566 0 6 691 1786 215 34 5 chr3 13931596 13932044 -145667739 - L1_Mur3 LINE L1 -469 5411 4951 5 691 715 246 92 39 chr3 13932129 13932191 -145667592 + Lx6 LINE L1 6680 6735 -725 6 691 306 106 0 0 chr3 13932191 13932238 -145667545 + (TAA)n Simple_repeat Simple_repeat 2 48 0 6 691 1773 263 58 17 chr3 13932238 13932832 -145666951 + Lx6 LINE L1 6455 7430 -30 6 691 348 346 27 101 chr3 13932846 13933142 -145666641 + L1M2 LINE L1 4006 4279 -1864 6 691 3085 151 6 0 chr3 13934418 13934927 -145664856 - Lx2A LINE L1 0 7008 6497 6 691 2119 196 65 22 chr3 13935131 13935590 -145664193 - RMER1B Other Other -6 1060 582 6 691 971 301 186 27 chr3 13935574 13935993 -145663790 - RMER1A Other Other -567 463 1 6 691 1141 148 157 0 chr3 13936164 13936400 -145663383 + Lx2A1 LINE L1 6736 7008 0 6 691 21 0 0 0 chr3 13936668 13936689 -145663094 + AT_rich Low_complexity Low_complexity 1 21 0 6 691 349 154 144 0 chr3 13937712 13937816 -145661967 - Lx9 LINE L1 -7 7637 7519 6 691 231 326 68 8 chr3 13937830 13937963 -145661820 - RLTR22_Mur LTR ERVK -397 1451 1311 6 691 2279 223 100 3 chr3 13937974 13938463 -145661320 - Lx9 LINE L1 -160 7484 6947 6 691 210 71 0 0 chr3 13938463 13938491 -145661292 + (CA)n Simple_repeat Simple_repeat 1 28 0 6 691 2279 223 100 3 chr3 13938491 13938603 -145661180 - Lx9 LINE L1 -698 6946 6826 6 691 1893 148 13 0 chr3 13938603 13938914 -145660869 + Lx2 LINE L1 6683 6997 0 6 691 27 49 0 0 chr3 13939020 13939061 -145660722 + AT_rich Low_complexity Low_complexity 1 41 0 6 691 25 0 0 0 chr3 13939495 13939520 -145660263 + AT_rich Low_complexity Low_complexity 1 25 0 6 691 522 324 15 7 chr3 13939574 13939711 -145660072 + RSINE1 SINE B4 16 153 -12 6 691 545 368 26 52 chr3 13940695 13941042 -145658741 - MLT1A0 LTR MaLR -5 360 23 6 691 318 26 0 0 chr3 13941283 13941322 -145658461 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 6 691 1106 59 0 0 chr3 13941322 13941458 -145658325 - B1_Mus1 SINE Alu -12 136 1 6 691 21 0 0 0 chr3 13941530 13941551 -145658232 + AT_rich Low_complexity Low_complexity 1 21 0 6 691 22 0 0 0 chr3 13941612 13941634 -145658149 + AT_rich Low_complexity Low_complexity 1 22 0 6 691 261 109 0 0 chr3 13942016 13942062 -145657721 + (A)n Simple_repeat Simple_repeat 1 46 0 6 691 213 121 0 0 chr3 13942404 13942437 -145657346 + (T)n Simple_repeat Simple_repeat 1 33 0 6 691 24 0 0 0 chr3 13945478 13945502 -145654281 + AT_rich Low_complexity Low_complexity 1 24 0 6 691 2291 135 40 20 chr3 13949416 13949816 -145649967 + MTC LTR MaLR 6 413 -8 6 691 247 380 0 79 chr3 13950056 13950196 -145649587 + Charlie23a DNA MER1_type 3 131 -208 6 691 27 0 0 0 chr3 13950229 13950256 -145649527 + AT_rich Low_complexity Low_complexity 1 27 0 6 691 282 29 0 0 chr3 13950370 13950405 -145649378 + (CA)n Simple_repeat Simple_repeat 2 36 0 6 691 180 0 0 0 chr3 13950405 13950424 -145649359 + (TA)n Simple_repeat Simple_repeat 2 21 0 6 691 183 129 0 0 chr3 13951634 13951665 -145648118 + (CATA)n Simple_repeat Simple_repeat 4 34 0 6 691 4567 136 4 7 chr3 13951678 13952398 -145647385 + Lx2 LINE L1 5928 6645 -352 6 691 1287 157 0 0 chr3 13952402 13952612 -145647171 + Lx2 LINE L1 6788 6997 0 6 691 708 196 21 48 chr3 13952640 13952785 -145646998 + B1_Mur4 SINE Alu 2 142 -8 6 691 788 114 27 0 chr3 13953812 13953961 -145645822 + (TC)n Simple_repeat Simple_repeat 2 154 0 6 691 776 285 63 41 chr3 13954342 13954785 -145644998 - L1MA9 LINE L1 -917 5226 4774 6 691 742 287 111 43 chr3 13954801 13955481 -145644302 + L1MA9 LINE L1 5254 5979 -333 6 691 1249 280 61 58 chr3 13955512 13955707 -145644076 - MTD LTR MaLR -8 411 207 6 691 380 20 0 20 chr3 13955707 13955757 -145644026 + (CA)n Simple_repeat Simple_repeat 1 49 0 6 691 1249 280 61 58 chr3 13955757 13955971 -145643812 - MTD LTR MaLR -213 206 2 6 691 456 274 105 5 chr3 13955971 13956180 -145643603 + L1MA9 LINE L1 6007 6236 -55 6 691 1383 218 66 69 chr3 13956365 13956744 -145643039 - ORR1B2 LTR MaLR 0 378 1 6 691 1008 236 42 141 chr3 13956809 13957037 -145642746 + ORR1B2 LTR MaLR 48 289 -78 6 691 1138 95 30 0 chr3 13957037 13957206 -145642577 + L1_Mus1 LINE L1 6394 6567 0 6 691 1008 236 42 141 chr3 13957206 13957259 -145642524 + ORR1B2 LTR MaLR 290 312 -55 6 691 272 48 24 0 chr3 13957259 13957301 -145642482 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 6 691 1008 236 42 141 chr3 13957301 13957373 -145642410 + ORR1B2 LTR MaLR 313 367 0 6 691 2057 214 70 14 chr3 13957373 13957862 -145641921 - ORR1B2-int LTR MaLR -30 1479 964 6 691 1603 189 101 20 chr3 13957862 13958218 -145641565 - MTB_Mm LTR MaLR 0 407 23 6 691 333 0 0 0 chr3 13958218 13958255 -145641528 + (CA)n Simple_repeat Simple_repeat 2 38 0 6 691 723 42 0 0 chr3 13958255 13958349 -145641434 + (GA)n Simple_repeat Simple_repeat 2 96 0 6 691 2231 270 95 48 chr3 13958365 13959162 -145640621 - ORR1B2-int LTR MaLR -535 835 1 6 691 1482 155 63 92 chr3 13959166 13959501 -145640282 - ORR1B2 LTR MaLR -8 359 35 6 691 951 117 0 0 chr3 13959559 13959739 -145640044 + (TC)n Simple_repeat Simple_repeat 1 180 0 6 691 770 90 8 0 chr3 13959818 13959952 -145639831 + (TC)n Simple_repeat Simple_repeat 2 136 0 6 691 1909 335 96 34 chr3 13960051 13961437 -145638346 - Lx8 LINE L1 -226 7247 5786 6 691 4141 72 11 4 chr3 13961437 13961984 -145637799 - L1Md_F2 LINE L1 -2 6580 6030 6 691 1909 277 133 36 chr3 13961984 13962088 -145637695 - Lx8 LINE L1 -1688 5785 5628 6 691 29 28 0 0 chr3 13962089 13962125 -145637658 + AT_rich Low_complexity Low_complexity 1 36 0 6 691 703 270 12 37 chr3 13962125 13962367 -145637416 + L1M2 LINE L1 5389 5624 -673 6 691 258 275 44 0 chr3 13962793 13962884 -145636899 + Lx7 LINE L1 5590 5684 -2012 6 691 345 364 16 16 chr3 13962923 13963046 -145636737 + ID_B1 SINE B4 90 212 -12 6 691 864 132 0 0 chr3 13963177 13963343 -145636440 + (GA)n Simple_repeat Simple_repeat 1 166 0 6 691 28 29 0 0 chr3 13963793 13963828 -145635955 + AT_rich Low_complexity Low_complexity 1 35 0 6 691 470 185 7 0 chr3 13963987 13964122 -145635661 + (CA)n Simple_repeat Simple_repeat 1 136 0 6 691 246 240 4 30 chr3 13964173 13964414 -145635369 + (CA)n Simple_repeat Simple_repeat 1 234 0 6 691 207 0 0 0 chr3 13964590 13964613 -145635170 + (TTTAA)n Simple_repeat Simple_repeat 3 25 0 6 691 3596 67 102 12 chr3 13964618 13965550 -145634233 - L1Md_F2 LINE L1 -22 6560 5545 6 691 26 0 0 0 chr3 13965679 13965705 -145634078 + AT_rich Low_complexity Low_complexity 1 26 0 6 691 40527 16 1 6 chr3 13965705 13972085 -145627698 - L1Md_A LINE L1 -3 6579 237 6 691 21 0 0 0 chr3 13972941 13972962 -145626821 + AT_rich Low_complexity Low_complexity 1 21 0 6 691 5048 253 50 13 chr3 13973630 13975067 -145624716 - Lx5 LINE L1 -7 7043 5533 6 691 3634 166 31 2 chr3 13975356 13976001 -145623782 + Lx LINE L1 5985 6648 -6 6 691 901 283 152 18 chr3 13976717 13977093 -145622690 + Lx9 LINE L1 7055 7485 -159 6 691 1572 218 110 3 chr3 13977093 13977466 -145622317 - MTC LTR MaLR -4 417 5 6 691 901 283 152 18 chr3 13977466 13977596 -145622187 + Lx9 LINE L1 7486 7628 -16 6 691 478 336 7 7 chr3 13978926 13979067 -145620716 + RSINE1 SINE B4 1 141 -24 6 691 288 0 0 0 chr3 13979068 13979100 -145620683 + (CA)n Simple_repeat Simple_repeat 2 33 0 6 691 194 362 0 60 chr3 13979957 13980057 -145619726 - L2c LINE L2 -8 3379 3286 6 691 285 324 99 117 chr3 13980682 13980955 -145618828 + ORR1E LTR MaLR 81 348 -11 6 691 1075 136 48 62 chr3 13981630 13982038 -145617745 + L1_Mus4 LINE L1 6404 6636 0 6 691 885 45 0 0 chr3 13982040 13982150 -145617633 + (GGAA)n Simple_repeat Simple_repeat 3 112 0 6 691 32924 103 19 8 chr3 13982916 13989201 -145610582 - L1Md_F2 LINE L1 -1 6581 242 6 691 21 36 0 0 chr3 13989372 13989400 -145610383 + AT_rich Low_complexity Low_complexity 1 28 0 6 691 213 128 0 25 chr3 13990671 13990711 -145609072 + (TTG)n Simple_repeat Simple_repeat 2 40 0 6 691 567 340 30 8 chr3 13992096 13992363 -145607420 + B4 SINE B4 2 274 -18 6 691 543 43 0 0 chr3 13992374 13992444 -145607339 + (CA)n Simple_repeat Simple_repeat 2 71 0 6 691 185 345 42 17 chr3 13992655 13992773 -145607010 + MIRb SINE MIR 136 256 -12 6 691 2494 315 53 33 chr3 13992876 13994013 -145605770 - Lx8 LINE L1 -118 7355 6197 6 691 186 171 0 0 chr3 13994014 13994055 -145605728 + CT-rich Low_complexity Low_complexity 2 42 0 6 691 204 135 0 0 chr3 13994054 13994091 -145605692 + (TATG)n Simple_repeat Simple_repeat 4 40 0 6 691 291 236 192 41 chr3 13994872 13995018 -145604765 + MLT1A0 LTR MaLR 1 168 -197 6 691 1690 95 8 12 chr3 13995021 13995277 -145604506 - L1_Mus3 LINE L1 -12 6626 6372 6 691 257 294 0 56 chr3 13995277 13995349 -145604434 - MLT1A1 LTR MaLR -85 323 256 6 691 427 268 78 8 chr3 13995348 13995476 -145604307 + MLT1A0 LTR MaLR 166 302 -63 6 691 3454 95 0 25 chr3 13995610 13996126 -145603657 - L1Md_F2 LINE L1 -2 6580 6078 6 691 41 87 0 0 chr3 13996773 13996877 -145602906 + AT_rich Low_complexity Low_complexity 1 104 0 6 691 1072 83 7 0 chr3 13996916 13997060 -145602723 + B1_Mm SINE Alu 1 145 -2 6 691 353 102 0 17 chr3 13997073 13997133 -145602650 + (GAAA)n Simple_repeat Simple_repeat 2 60 0 6 691 16595 123 24 18 chr3 13997229 13999528 -145600255 + L1_Mm LINE L1 2938 5249 -634 6 691 597 120 0 0 chr3 13999528 13999620 -145600163 + (TA)n Simple_repeat Simple_repeat 2 93 0 6 691 16595 123 24 18 chr3 13999620 14000000 -145599783 + L1_Mm LINE L1 5250 5632 -251 6 691 7117 70 2 8 chr3 14000000 14000937 -145598846 + L1_Mus2 LINE L1 5634 6565 -1 1 691 1644 76 9 0 chr3 14001373 14001596 -145598187 + L1_Mus2 LINE L1 6341 6565 -1 2 691 240 241 101 27 chr3 14001743 14001892 -145597891 - L1MB1 LINE L1 -7 6161 6002 3 691 486 319 28 28 chr3 14004938 14005222 -145594561 + L1MB3 LINE L1 5898 6181 -2 4 691 648 343 68 77 chr3 14005860 14006156 -145593627 + Tigger9b DNA MER2_type 5 285 -339 5 691 873 209 124 0 chr3 14006156 14006357 -145593426 - URR1A DNA MER1_type 0 226 1 6 691 648 343 68 77 chr3 14006357 14006606 -145593177 + Tigger9b DNA MER2_type 286 545 -79 5 691 305 329 54 46 chr3 14007011 14007302 -145592481 - LTR81A LTR ERV1? -1002 391 99 7 691 2834 64 0 3 chr3 14008156 14008515 -145591268 - L1Md_F2 LINE L1 -495 6087 5730 8 691 1197 89 0 11 chr3 14008515 14008696 -145591087 + L1Md_F2 LINE L1 6392 6570 -12 9 691 22 70 0 0 chr3 14008747 14008790 -145590993 + AT_rich Low_complexity Low_complexity 1 43 0 1 691 884 220 91 15 chr3 14008790 14009053 -145590730 - Lx7 LINE L1 -591 7105 6823 1 691 8033 249 180 33 chr3 14009070 14010194 -145589589 - L1_Mur3 LINE L1 -13 5864 4639 1 691 594 68 0 0 chr3 14010194 14010282 -145589501 + (TG)n Simple_repeat Simple_repeat 2 89 0 1 691 8206 212 120 41 chr3 14010282 14011518 -145588265 - L1_Mur3 LINE L1 -1239 4638 3039 1 691 1048 109 0 26 chr3 14011518 14011669 -145588114 - B1_Mus1 SINE Alu 0 148 2 1 691 8206 204 108 43 chr3 14011669 14012617 -145587166 - L1_Mur3 LINE L1 -2798 3082 2054 1 691 405 116 0 0 chr3 14012617 14012686 -145587097 + (TG)n Simple_repeat Simple_repeat 2 70 0 1 691 8206 209 153 31 chr3 14012686 14013670 -145586113 - L1_Mur3 LINE L1 -3827 2053 835 1 691 231 311 122 29 chr3 14013696 14013835 -145585948 - RMER2 LTR ERV1 -32 535 384 1 691 1728 251 55 62 chr3 14014194 14014738 -145585045 - L1_Mur3 LINE L1 -6891 837 298 1 691 6432 64 6 0 chr3 14014874 14015699 -145584084 - L1_Mus1 LINE L1 -1 6566 5737 1 691 591 126 0 0 chr3 14015699 14015786 -145583997 + B1_Mus1 SINE Alu 8 94 -54 1 691 374 308 29 9 chr3 14015701 14015806 -145583977 + B4A SINE B4 94 200 -92 1 691 25 51 0 0 chr3 14015807 14015846 -145583937 + AT_rich Low_complexity Low_complexity 1 39 0 2 691 385 296 73 100 chr3 14016807 14017178 -145582605 - Lx9 LINE L1 -21 7623 7263 2 691 1205 33 7 0 chr3 14017231 14017381 -145582402 + (TTTC)n Simple_repeat Simple_repeat 2 152 0 2 691 1258 232 34 91 chr3 14017444 14017851 -145581932 + ORR1C2 LTR MaLR 1 384 0 2 691 560 288 98 33 chr3 14017893 14018206 -145581577 + RMER1B Other Other 180 542 -800 2 691 425 161 11 11 chr3 14018260 14018348 -145581435 + RMER1C Other Other 1255 1342 0 2 691 443 298 88 9 chr3 14018684 14019012 -145580771 + L1M2 LINE L1 4115 4468 -1675 2 691 213 341 46 23 chr3 14020114 14020201 -145579582 + B1F SINE Alu 13 101 -48 2 691 1625 176 99 6 chr3 14020311 14020689 -145579094 + Lx4A LINE L1 6641 7058 0 2 691 286 330 29 0 chr3 14021580 14021683 -145578100 + PB1D7 SINE Alu 7 112 -8 2 691 21 0 0 0 chr3 14021798 14021819 -145577964 + AT_rich Low_complexity Low_complexity 1 21 0 3 691 336 333 56 56 chr3 14022509 14022706 -145577077 - MLT1F1 LTR MaLR -2 567 371 3 691 634 252 52 19 chr3 14023024 14023178 -145576605 + B3A SINE B2 2 160 -38 3 691 23 33 0 0 chr3 14023178 14023208 -145576575 + AT_rich Low_complexity Low_complexity 1 30 0 3 691 301 300 77 39 chr3 14023223 14023379 -145576404 - MLT1D LTR MaLR -65 440 279 3 691 419 286 93 0 chr3 14023942 14024082 -145575701 + MER2 DNA MER2_type 82 234 -111 3 86 1481 211 83 21 chr3 14024539 14024878 -145574905 + MTB_Mm LTR MaLR 40 399 -8 3 692 1327 269 86 6 chr3 14025425 14025904 -145573879 - Lx6 LINE L1 -671 6379 5832 3 692 337 325 98 50 chr3 14026505 14026864 -145572919 + Lx8 LINE L1 7095 7470 -3 3 692 225 108 0 0 chr3 14027683 14027720 -145572063 + (TTTG)n Simple_repeat Simple_repeat 1 37 0 3 692 399 308 0 0 chr3 14027722 14027865 -145571918 + (TG)n Simple_repeat Simple_repeat 2 144 0 4 692 240 297 0 0 chr3 14028916 14028980 -145570803 - Lx8 LINE L1 -524 6949 6886 4 692 883 312 74 6 chr3 14028996 14029322 -145570461 - Lx9 LINE L1 -802 6842 6495 4 692 1209 232 8 12 chr3 14029512 14029761 -145570022 - 7SK RNA RNA -82 249 2 4 692 5631 218 65 8 chr3 14029767 14031454 -145568329 + Lx5 LINE L1 5215 6987 -63 4 692 270 73 0 0 chr3 14033542 14033583 -145566200 + (CAAAAA)n Simple_repeat Simple_repeat 2 42 0 4 692 369 0 0 0 chr3 14034367 14034408 -145565375 + (CA)n Simple_repeat Simple_repeat 2 42 0 4 692 265 306 8 83 chr3 14034603 14034724 -145565059 - RMER30 DNA MER1_type -52 150 39 4 692 2857 175 62 44 chr3 14034856 14034870 -145564913 - RLTR17 LTR ERVK 0 692 679 4 692 349 20 0 0 chr3 14034870 14034920 -145564863 - L1_Mus4 LINE L1 -7 6629 6580 4 692 2857 175 62 44 chr3 14034920 14035514 -145564269 - RLTR17 LTR ERVK -14 678 73 4 692 473 310 144 16 chr3 14035985 14036172 -145563611 - B3 SINE B2 -5 211 1 5 692 255 61 0 0 chr3 14036598 14036631 -145563152 + (TA)n Simple_repeat Simple_repeat 1 33 0 5 692 1838 146 8 110 chr3 14037583 14037946 -145561837 - ORR1A3 LTR MaLR 0 326 1 5 692 382 329 44 31 chr3 14038050 14038276 -145561507 - L1M5 LINE L1 -908 5238 5010 5 692 1212 61 0 0 chr3 14038428 14038575 -145561208 + B1_Mus1 SINE Alu 2 148 0 5 692 461 325 47 123 chr3 14039241 14039518 -145560265 + B4A SINE B4 35 290 -2 5 692 28 0 0 0 chr3 14039588 14039616 -145560167 + AT_rich Low_complexity Low_complexity 1 28 0 5 692 333 0 0 0 chr3 14039907 14039944 -145559839 + (CA)n Simple_repeat Simple_repeat 2 38 0 5 692 265 305 132 9 chr3 14040160 14040266 -145559517 - ORR1C2 LTR MaLR -174 210 92 5 692 277 329 0 0 chr3 14040435 14040508 -145559275 + B3 SINE B2 3 75 -141 5 692 1837 191 8 35 chr3 14040787 14041161 -145558622 - ORR1B2 LTR MaLR -3 364 1 6 692 210 91 0 0 chr3 14041361 14041394 -145558389 + (TTTG)n Simple_repeat Simple_repeat 3 35 0 6 692 355 305 108 11 chr3 14041433 14041609 -145558174 - L3 LINE CR1 -686 3803 3611 6 692 22 0 0 0 chr3 14042011 14042033 -145557750 + AT_rich Low_complexity Low_complexity 1 22 0 6 692 21 36 0 0 chr3 14042656 14042684 -145557099 + AT_rich Low_complexity Low_complexity 1 28 0 6 692 276 325 45 37 chr3 14043212 14043346 -145556437 - B1F1 SINE Alu -2 147 13 6 692 525 94 0 0 chr3 14044373 14044458 -145555325 + (TGAG)n Simple_repeat Simple_repeat 4 88 0 6 692 243 0 0 0 chr3 14046234 14046261 -145553522 + (TTA)n Simple_repeat Simple_repeat 1 27 0 6 692 1629 199 55 9 chr3 14046261 14046712 -145553071 - Lx2B LINE L1 -6 6991 6498 6 692 2161 180 3 5 chr3 14046706 14047086 -145552697 - L1_Mur2 LINE L1 -7 5870 5492 6 692 408 232 8 46 chr3 14047792 14047923 -145551860 - Lx9 LINE L1 0 7644 7519 7 692 342 0 0 0 chr3 14047925 14047963 -145551820 + (CA)n Simple_repeat Simple_repeat 2 39 0 7 692 444 131 95 0 chr3 14047963 14048047 -145551736 - Lx9 LINE L1 -168 7476 7385 7 692 720 191 7 0 chr3 14048523 14048664 -145551119 + L1_Rod LINE L1 494 635 -6537 7 692 585 0 0 0 chr3 14048896 14048961 -145550822 + (GA)n Simple_repeat Simple_repeat 1 65 0 7 692 2893 210 77 48 chr3 14049098 14049898 -145549885 - RMER13B LTR ERVK -9 899 1 7 692 727 235 68 40 chr3 14050647 14050895 -145548888 + RLTR11A LTR ERVK 1 255 -273 7 692 241 324 14 54 chr3 14051017 14051164 -145548619 + RLTR11A LTR ERVK 287 427 -26 7 692 478 233 78 52 chr3 14051727 14051881 -145547902 - MER67C LTR ERV1 -270 441 284 7 692 302 316 137 0 chr3 14052339 14052478 -145547305 - MTE-int LTR MaLR -48 1532 1375 7 692 203 229 16 0 chr3 14052482 14052543 -145547240 + (TA)n Simple_repeat Simple_repeat 2 63 0 7 692 649 342 134 68 chr3 14052733 14053361 -145546422 - MTE-int LTR MaLR -652 928 260 7 692 238 293 128 50 chr3 14053692 14053998 -145545785 - ORR1B1 LTR MaLR -2 392 45 7 692 3077 71 0 62 chr3 14054020 14054485 -145545298 + L1Md_F2 LINE L1 6146 6581 -1 8 692 842 146 58 0 chr3 14054629 14054766 -145545017 + B1_Mus1 SINE Alu 3 147 -1 8 692 39 22 0 0 chr3 14054766 14054812 -145544971 + AT_rich Low_complexity Low_complexity 1 46 0 8 692 33690 86 11 2 chr3 14054825 14060927 -145538856 - L1Md_F2 LINE L1 -13 6569 415 8 692 501 17 0 0 chr3 14061117 14061175 -145538608 + (CA)n Simple_repeat Simple_repeat 2 59 0 8 692 310 287 30 69 chr3 14061177 14061308 -145538475 - MER67C LTR ERV1 -581 130 5 7 692 185 254 0 132 chr3 14061323 14061391 -145538392 - MIR SINE MIR -114 94 36 8 692 3883 250 89 29 chr3 14061862 14062300 -145537483 - RMER12 LTR ERVK -10 1312 755 8 692 300 53 0 0 chr3 14062300 14062338 -145537445 + (TGGA)n Simple_repeat Simple_repeat 1 38 0 8 692 3883 170 62 45 chr3 14062338 14063052 -145536731 - RMER12 LTR ERVK -568 754 1 8 692 776 324 58 38 chr3 14064263 14064609 -145535174 - ORR1E LTR MaLR -6 353 1 8 692 487 219 97 41 chr3 14064614 14064809 -145534974 - ORR1E-int LTR MaLR -7 1363 1158 8 692 483 239 134 52 chr3 14064799 14064971 -145534812 - ORR1E LTR MaLR -168 191 6 8 692 296 256 141 5 chr3 14065765 14065950 -145533833 - Lx7 LINE L1 0 7696 7487 8 692 243 227 0 0 chr3 14065960 14066026 -145533757 + (CA)n Simple_repeat Simple_repeat 1 66 0 9 692 3979 187 110 28 chr3 14066438 14067275 -145532508 - RMER13B LTR ERVK -2 906 1 9 692 259 347 165 22 chr3 14067582 14068086 -145531697 - L2b LINE L2 -259 3167 2568 9 692 213 213 0 21 chr3 14068374 14068422 -145531361 + PB1D10 SINE Alu 27 73 -44 9 692 2415 34 0 10 chr3 14068531 14068829 -145530954 + L1Md_F3 LINE L1 6289 6583 -1 9 692 444 308 42 52 chr3 14068950 14069142 -145530641 - L2b LINE L2 -958 2461 2272 9 692 578 282 65 20 chr3 14069616 14069815 -145529968 + B3 SINE B2 3 210 -6 9 692 200 0 0 91 chr3 14070406 14070439 -145529344 + (ATAAG)n Simple_repeat Simple_repeat 2 31 0 9 692 360 294 64 25 chr3 14071658 14071815 -145527968 - MER117 DNA MER1_type -31 166 4 9 692 2713 182 31 7 chr3 14072124 14072671 -145527112 - RLTR31_Mm LTR ERVK -1 560 1 9 692 7212 57 5 0 chr3 14073054 14073950 -145525833 - L1_Mus1 LINE L1 0 6567 5668 9 692 531 88 12 48 chr3 14073950 14074034 -145525749 + L1_Mus1 LINE L1 5609 5689 -878 9 692 187 360 12 0 chr3 14074443 14074529 -145525254 - MIR SINE MIR -61 201 115 1 692 426 308 0 0 chr3 14075098 14075205 -145524578 + PB1D10 SINE Alu 10 116 -1 1 692 2209 108 29 3 chr3 14075281 14075625 -145524158 - Lx2A LINE L1 -1 7007 6655 1 692 273 272 154 71 chr3 14076207 14076389 -145523394 + MIR SINE MIR 30 226 -36 1 692 367 323 63 24 chr3 14077870 14078124 -145521659 - MER58B DNA MER1_type -15 326 63 1 692 674 335 192 0 chr3 14078299 14078606 -145521177 - MTE2b LTR MaLR -13 366 1 1 692 457 340 176 36 chr3 14079585 14079828 -145519955 + B4 SINE B4 8 284 -8 1 692 489 67 0 0 chr3 14079914 14079974 -145519809 - Lx LINE L1 -494 6160 6101 1 692 2626 113 97 7 chr3 14079974 14080427 -145519356 + Lx LINE L1 6155 6648 -6 1 692 549 80 0 0 chr3 14081009 14081084 -145518699 + (TA)n Simple_repeat Simple_repeat 1 75 0 1 692 22 56 0 0 chr3 14081168 14081204 -145518579 + AT_rich Low_complexity Low_complexity 1 36 0 1 692 24 0 0 0 chr3 14083078 14083102 -145516681 + AT_rich Low_complexity Low_complexity 1 24 0 1 692 219 88 0 0 chr3 14083389 14083423 -145516360 + (TG)n Simple_repeat Simple_repeat 1 34 0 1 692 294 143 0 0 chr3 14083477 14083526 -145516257 + (TA)n Simple_repeat Simple_repeat 1 49 0 1 692 22 56 0 0 chr3 14083574 14083610 -145516173 + AT_rich Low_complexity Low_complexity 1 36 0 1 692 22 35 0 0 chr3 14083663 14083692 -145516091 + AT_rich Low_complexity Low_complexity 1 29 0 1 692 201 184 17 34 chr3 14084700 14084818 -145514965 + (TAA)n Simple_repeat Simple_repeat 3 118 0 1 692 999 97 28 0 chr3 14087193 14087337 -145512446 + B1_Mus1 SINE Alu 1 148 0 1 692 991 81 18 12 chr3 14088012 14088175 -145511608 - L1_Mus3 LINE L1 0 6638 6475 1 692 894 88 0 0 chr3 14089559 14089684 -145510099 + (TC)n Simple_repeat Simple_repeat 2 126 0 1 692 281 26 0 26 chr3 14091862 14091901 -145507882 + (CAAA)n Simple_repeat Simple_repeat 3 40 0 1 692 22 35 0 0 chr3 14091998 14092027 -145507756 + AT_rich Low_complexity Low_complexity 1 29 0 1 692 602 295 108 44 chr3 14092328 14092644 -145507139 + MER82 DNA MER2_type 49 384 -269 1 692 666 91 36 0 chr3 14092664 14092774 -145507009 + Lx LINE L1 6536 6649 -5 1 692 253 62 42 0 chr3 14092836 14092884 -145506899 + (CAAA)n Simple_repeat Simple_repeat 2 51 0 1 692 444 353 60 60 chr3 14094512 14094729 -145505054 - B4 SINE B4 -75 217 1 1 692 232 270 59 10 chr3 14095224 14095325 -145504458 - L1_Mur2 LINE L1 -1980 3897 3792 1 692 338 337 62 48 chr3 14095784 14096074 -145503709 - L3 LINE CR1 -167 4322 4029 1 692 189 107 0 0 chr3 14096415 14096443 -145503340 + (TA)n Simple_repeat Simple_repeat 2 29 0 1 692 492 18 0 0 chr3 14096907 14096964 -145502819 + (GGAA)n Simple_repeat Simple_repeat 3 59 0 1 692 3269 43 5 0 chr3 14100304 14100698 -145499085 - MTA_Mm LTR MaLR 0 396 1 1 692 2698 139 32 24 chr3 14100899 14100913 -145498870 - Lx LINE L1 -2 6652 6640 1 692 243 0 0 0 chr3 14100913 14100940 -145498843 + (TTTA)n Simple_repeat Simple_repeat 4 30 0 1 692 2698 139 32 24 chr3 14100940 14101418 -145498365 - Lx LINE L1 -15 6639 6156 1 692 3393 217 45 23 chr3 14101424 14102260 -145497523 - Lx5 LINE L1 0 7058 6177 1 692 307 272 81 62 chr3 14102418 14102579 -145497204 + RLTR11B LTR ERVK 288 468 -60 1 692 847 125 0 40 chr3 14102634 14102784 -145496999 - Lx5 LINE L1 -1126 5924 5781 1 692 419 308 25 8 chr3 14102883 14103004 -145496779 - ID_B1 SINE B4 -20 204 82 1 692 566 295 131 60 chr3 14103061 14103375 -145496408 - ORR1E LTR MaLR 0 359 24 1 692 534 70 0 0 chr3 14103788 14103859 -145495924 + (TA)n Simple_repeat Simple_repeat 2 72 0 1 692 1857 166 42 12 chr3 14104070 14104406 -145495377 + ORR1B1 LTR MaLR 41 386 -8 1 692 2170 198 109 12 chr3 14104680 14105195 -145494588 - Lx5 LINE L1 -664 6386 5822 1 692 2714 175 44 21 chr3 14105193 14105758 -145494025 - L1_Mur2 LINE L1 -699 5178 4601 1 692 348 333 117 50 chr3 14106432 14106953 -145492830 + L1MB4 LINE L1 5585 6140 -40 1 692 22 0 0 0 chr3 14107030 14107052 -145492731 + AT_rich Low_complexity Low_complexity 1 22 0 1 692 291 28 0 0 chr3 14107546 14107582 -145492201 + (CA)n Simple_repeat Simple_repeat 2 37 0 1 692 23 86 0 0 chr3 14107603 14107661 -145492122 + AT_rich Low_complexity Low_complexity 1 58 0 1 692 25 75 0 0 chr3 14107943 14107996 -145491787 + AT_rich Low_complexity Low_complexity 1 53 0 1 692 21 0 0 0 chr3 14109203 14109224 -145490559 + AT_rich Low_complexity Low_complexity 1 21 0 1 692 569 141 235 7 chr3 14109988 14110124 -145489659 - RLTR25A LTR ERVK 0 1103 937 1 692 647 152 0 11 chr3 14110152 14110331 -145489452 + (TCTCTG)n Simple_repeat Simple_repeat 2 178 0 1 692 350 65 0 0 chr3 14110334 14110380 -145489403 + (TG)n Simple_repeat Simple_repeat 1 46 0 1 692 226 244 89 89 chr3 14110380 14110470 -145489313 - RLTR25A LTR ERVK -203 825 736 1 692 886 170 120 16 chr3 14110579 14110770 -145489013 - RLTR25A LTR ERVK -175 853 643 1 692 2577 179 36 52 chr3 14110769 14111292 -145488491 - RLTR25A LTR ERVK -586 517 3 1 692 3306 41 2 2 chr3 14111727 14112122 -145487661 + MTA_Mm LTR MaLR 1 395 -1 1 692 324 179 0 0 chr3 14112129 14112207 -145487576 + A-rich Low_complexity Low_complexity 1 78 0 1 692 21 0 0 0 chr3 14112993 14113014 -145486769 + AT_rich Low_complexity Low_complexity 1 21 0 1 692 216 0 0 0 chr3 14113209 14113233 -145486550 + (CAAAAA)n Simple_repeat Simple_repeat 2 25 0 1 692 22 80 0 0 chr3 14114357 14114407 -145485376 + AT_rich Low_complexity Low_complexity 1 50 0 1 692 25 0 0 0 chr3 14114947 14114972 -145484811 + AT_rich Low_complexity Low_complexity 1 25 0 1 692 426 189 0 13 chr3 14116345 14116420 -145483363 - Lx8 LINE L1 -941 6532 6459 1 692 629 324 31 14 chr3 14117001 14117223 -145482560 - RMER15 LTR ERVL -43 532 307 1 692 360 0 0 0 chr3 14117282 14117322 -145482461 + (TA)n Simple_repeat Simple_repeat 1 40 0 1 692 260 141 55 27 chr3 14117325 14117398 -145482385 + (TAGA)n Simple_repeat Simple_repeat 4 78 0 1 692 180 111 0 0 chr3 14118447 14118474 -145481309 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1 692 22 56 0 0 chr3 14118775 14118811 -145480972 + AT_rich Low_complexity Low_complexity 1 36 0 1 692 320 348 86 0 chr3 14119265 14119452 -145480331 - MLT1B LTR MaLR -187 203 1 1 692 225 0 0 0 chr3 14119687 14119712 -145480071 + (TG)n Simple_repeat Simple_repeat 1 25 0 1 692 459 0 0 0 chr3 14119712 14119762 -145480021 + (GA)n Simple_repeat Simple_repeat 1 51 0 1 692 1139 101 9 9 chr3 14120024 14120252 -145479531 + (TCCCC)n Simple_repeat Simple_repeat 1 227 0 1 692 1866 316 129 7 chr3 14120259 14121116 -145478667 - Lx8 LINE L1 -247 7226 6265 1 692 252 0 0 0 chr3 14121120 14121148 -145478635 + (TTCA)n Simple_repeat Simple_repeat 2 29 0 1 692 26 0 0 0 chr3 14122385 14122411 -145477372 + AT_rich Low_complexity Low_complexity 1 26 0 1 692 249 164 55 0 chr3 14123206 14123261 -145476522 + Lx9 LINE L1 7580 7637 -7 1 692 3548 184 39 28 chr3 14123733 14124579 -145475204 - RLTR13A LTR ERVK 0 855 1 1 692 294 295 10 40 chr3 14127969 14128068 -145471715 - Lx8 LINE L1 -307 7166 7071 1 692 212 167 0 0 chr3 14128069 14128111 -145471672 + (CA)n Simple_repeat Simple_repeat 1 42 0 1 692 1490 229 35 14 chr3 14128132 14128500 -145471283 - Lx6 LINE L1 -1482 5978 5603 1 692 361 226 64 11 chr3 14128556 14128650 -145471133 - BC1_Mm scRNA scRNA -46 106 8 1 692 232 410 0 0 chr3 14128786 14128869 -145470914 + ID_B1 SINE B4 79 161 -63 1 692 402 313 10 0 chr3 14128798 14128897 -145470886 + PB1D10 SINE Alu 10 109 -8 1 692 252 0 0 0 chr3 14130363 14130391 -145469392 + (TG)n Simple_repeat Simple_repeat 2 29 0 1 692 432 0 0 0 chr3 14130473 14130521 -145469262 + (TTA)n Simple_repeat Simple_repeat 1 48 0 1 692 185 204 58 58 chr3 14131606 14131658 -145468125 - L2 LINE L2 -1882 1537 1486 1 692 765 51 0 0 chr3 14132439 14132537 -145467246 + (CA)n Simple_repeat Simple_repeat 1 98 0 1 692 488 337 134 41 chr3 14133978 14134606 -145465177 + HAL1 LINE L1 720 1405 -1102 1 692 1440 171 8 31 chr3 14134612 14134872 -145464911 - RLTR23 LTR ERV1 0 430 177 1 692 1306 147 46 116 chr3 14134861 14135145 -145464638 - RLTR23 LTR ERV1 -157 273 10 1 692 457 132 21 35 chr3 14135288 14135429 -145464354 + (CAGAGA)n Simple_repeat Simple_repeat 2 140 0 1 692 824 146 23 12 chr3 14135813 14135986 -145463797 + CT-rich Low_complexity Low_complexity 3 177 0 1 692 7602 6 0 0 chr3 14136527 14137371 -145462412 + L1Md_T LINE L1 5739 6582 0 1 692 459 309 79 22 chr3 14137932 14138210 -145461573 - MER67D LTR ERV1 -173 341 48 1 692 185 284 54 54 chr3 14139679 14139772 -145460011 + MIRb SINE MIR 124 216 -52 1 692 351 0 0 0 chr3 14140880 14140919 -145458864 + (TA)n Simple_repeat Simple_repeat 1 39 0 1 692 28 71 0 0 chr3 14142274 14142330 -145457453 + AT_rich Low_complexity Low_complexity 1 56 0 1 692 185 260 40 0 chr3 14142738 14142788 -145456995 - MIRb SINE MIR -8 260 209 1 692 208 224 61 0 chr3 14143585 14143634 -145456149 + L2a LINE L2 3371 3422 -4 1 692 491 282 113 0 chr3 14143863 14144005 -145455778 - RSINE1 SINE B4 -2 163 6 1 692 396 0 0 0 chr3 14146083 14146127 -145453656 + (TG)n Simple_repeat Simple_repeat 1 44 0 1 692 825 318 50 15 chr3 14146813 14147075 -145452708 - B4A SINE B4 -20 272 2 1 692 511 189 21 57 chr3 14149882 14150022 -145449761 - RodERV21-int LTR ERV1 -3910 1081 947 1 692 217 0 61 0 chr3 14150121 14150154 -145449629 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 1 692 477 0 0 0 chr3 14150930 14150983 -145448800 + (GA)n Simple_repeat Simple_repeat 1 53 0 1 692 203 271 0 0 chr3 14151430 14151489 -145448294 + T-rich Low_complexity Low_complexity 1 59 0 2 692 477 0 0 0 chr3 14151799 14151852 -145447931 + (TAAA)n Simple_repeat Simple_repeat 2 54 0 2 692 334 304 38 22 chr3 14152501 14152686 -145447097 + MER53 DNA hAT 3 190 -3 2 692 486 33 0 0 chr3 14152746 14152806 -145446977 + (TAG)n Simple_repeat Simple_repeat 3 62 0 2 692 318 196 0 0 chr3 14152872 14152964 -145446819 + (TG)n Simple_repeat Simple_repeat 2 93 0 2 692 402 39 0 0 chr3 14152964 14153016 -145446767 + (GA)n Simple_repeat Simple_repeat 1 52 0 2 692 261 229 15 161 chr3 14153214 14153344 -145446439 - MLT1A1 LTR MaLR -4 404 294 2 692 234 283 119 20 chr3 14153411 14153512 -145446271 - MLT1A1 LTR MaLR -214 160 50 2 692 386 295 4 4 chr3 14153982 14154122 -145445661 + B3 SINE B2 4 208 -8 2 692 188 284 110 50 chr3 14154459 14154559 -145445224 - MIRb SINE MIR -68 200 95 2 692 26 50 0 0 chr3 14155277 14155317 -145444466 + AT_rich Low_complexity Low_complexity 1 40 0 2 693 486 181 0 0 chr3 14156234 14156378 -145443405 + CT-rich Low_complexity Low_complexity 2 145 0 2 693 9274 214 77 44 chr3 14156378 14160476 -145439307 - Lx6 LINE L1 -708 6752 2169 2 693 1203 149 4 116 chr3 14160554 14160805 -145438978 + URR1A DNA MER1_type 1 223 -3 2 693 431 347 19 26 chr3 14160805 14161066 -145438717 - Lx6 LINE L1 -7380 348 89 2 693 1913 137 38 6 chr3 14161244 14161561 -145438222 - ORR1A2 LTR MaLR 0 327 1 2 693 256 220 20 0 chr3 14161894 14161944 -145437839 + RLTR23 LTR ERV1 380 430 0 2 693 586 216 5 5 chr3 14162184 14162373 -145437410 - Lx LINE L1 -86 6568 6281 2 693 342 362 75 42 chr3 14165310 14165765 -145434018 + L3 LINE CR1 3940 4409 -80 2 693 257 274 36 0 chr3 14166147 14166231 -145433552 + L1_Mur2 LINE L1 3792 3878 -1999 2 693 3696 36 0 0 chr3 14166300 14166742 -145433041 + L1Md_A LINE L1 6141 6582 0 2 693 404 358 60 60 chr3 14167035 14167252 -145432531 + B4 SINE B4 1 217 -75 2 693 5585 108 58 5 chr3 14168978 14169845 -145429938 - Lx LINE L1 0 6654 5742 2 693 299 243 40 26 chr3 14170006 14170082 -145429701 - RLTR20D LTR ERVK -433 135 59 2 693 3238 70 0 44 chr3 14172450 14172901 -145426882 + L1_Mus2 LINE L1 6136 6566 0 2 693 309 326 69 48 chr3 14173379 14173524 -145426259 - LTR40c LTR ERVL -315 150 3 2 693 343 262 65 9 chr3 14174204 14174312 -145425471 + ORR1E LTR MaLR 84 197 -162 2 693 429 70 0 0 chr3 14174780 14174837 -145424946 + (CA)n Simple_repeat Simple_repeat 2 58 0 2 693 7886 136 66 40 chr3 14175318 14176729 -145423054 - Lx4A LINE L1 -3 7055 5608 2 693 21 36 0 0 chr3 14178927 14178955 -145420828 + AT_rich Low_complexity Low_complexity 1 28 0 2 693 1660 163 12 49 chr3 14179821 14180150 -145419633 - Lx2A1 LINE L1 0 7008 6692 2 693 657 195 40 29 chr3 14180153 14180327 -145419456 + Lx2A1 LINE L1 6827 7002 -6 2 693 22 0 0 0 chr3 14181010 14181032 -145418751 + AT_rich Low_complexity Low_complexity 1 22 0 2 693 868 269 101 52 chr3 14182861 14183268 -145416515 + RLTR28B LTR ERVL 1 427 -54 2 693 1226 229 173 41 chr3 14183974 14184171 -145415612 - RLTR33 LTR ERVK -85 593 404 2 693 216 0 0 0 chr3 14184171 14184195 -145415588 + (TTG)n Simple_repeat Simple_repeat 2 25 0 2 693 1226 229 173 41 chr3 14184195 14184366 -145415417 - RLTR33 LTR ERVK -275 403 177 2 693 21 0 0 0 chr3 14184653 14184674 -145415109 + AT_rich Low_complexity Low_complexity 1 21 0 2 693 616 118 21 0 chr3 14184770 14184863 -145414920 - B1_Mus1 SINE Alu -14 134 40 2 693 310 273 40 40 chr3 14184778 14184904 -145414879 - RLTR25B LTR ERVK -507 521 396 2 693 427 240 29 39 chr3 14184904 14185008 -145414775 - RLTR19-int LTR ERVK -1828 4309 4207 2 693 270 169 0 0 chr3 14185008 14185073 -145414710 + T-rich Low_complexity Low_complexity 1 65 0 2 693 1018 97 14 0 chr3 14185085 14185229 -145414554 - B1_Mus1 SINE Alu -1 147 2 2 693 1200 235 65 62 chr3 14185232 14185649 -145414134 - RLTR19-int LTR ERVK -1927 4210 3793 2 693 383 257 86 34 chr3 14185663 14185897 -145413886 - RLTR19-int LTR ERVK -2504 3633 3388 2 693 430 306 47 12 chr3 14186021 14186193 -145413590 - RLTR19-int LTR ERVK -2944 3193 3016 2 693 771 273 77 130 chr3 14186330 14186847 -145412936 + RLTR12B LTR ERVK 1 490 -38 2 693 2224 95 20 178 chr3 14186865 14187365 -145412418 - BGLII LTR ERVK 0 421 1 2 693 302 167 0 82 chr3 14187460 14187545 -145412238 - RLTR19-int LTR ERVK -4791 1346 1269 2 693 1926 177 33 85 chr3 14187549 14187821 -145411962 - L1Md_F2 LINE L1 -921 6076 5871 2 693 932 67 0 63 chr3 14187821 14187964 -145411819 - L1_Mus2 LINE L1 -2 6564 6431 2 693 3650 160 14 6 chr3 14187964 14188602 -145411181 - L1Md_F2 LINE L1 -712 5870 5253 2 693 1558 147 24 107 chr3 14188603 14188939 -145410844 + L1_Mur2 LINE L1 4951 5258 -619 2 693 235 311 0 0 chr3 14188941 14189002 -145410781 - MTC-int LTR MaLR -715 543 483 2 693 792 168 85 70 chr3 14189011 14189210 -145410573 - RLTR19-int LTR ERVK -4971 1166 965 2 693 7126 105 17 9 chr3 14189238 14189312 -145410471 - L1_Mus4 LINE L1 0 6636 6564 2 693 2647 79 82 114 chr3 14189312 14189810 -145409973 + RLTR45 LTR ERVK 1 482 0 2 693 7126 112 14 7 chr3 14189810 14190992 -145408791 - L1_Mus4 LINE L1 -73 6563 5371 2 693 4888 130 36 62 chr3 14190992 14191918 -145407865 - RLTR13D6 LTR ERVK 0 902 1 2 693 3399 176 11 2 chr3 14191918 14192545 -145407238 - L1_Mus4 LINE L1 -507 5376 4744 2 693 1886 255 101 30 chr3 14192585 14193327 -145406456 - RLTR19-int LTR ERVK -5167 970 141 2 693 1151 233 170 39 chr3 14193536 14193894 -145405889 - RLTR33 LTR ERVK -109 569 165 2 693 23 54 0 0 chr3 14194279 14194316 -145405467 + AT_rich Low_complexity Low_complexity 1 37 0 2 693 2013 126 37 6 chr3 14194494 14194821 -145404962 + Lx3C LINE L1 6040 6376 -600 2 693 1454 254 67 27 chr3 14195207 14195579 -145404204 - MTD LTR MaLR 0 419 33 2 693 1062 248 15 8 chr3 14195579 14195843 -145403940 - Lx6 LINE L1 -51 7409 7144 2 693 33140 72 6 20 chr3 14196626 14202917 -145396866 - L1Md_F2 LINE L1 -2 6580 409 2 693 196 369 110 39 chr3 14203582 14203836 -145395947 - L2 LINE L2 -366 3053 2782 2 693 223 326 121 13 chr3 14204693 14204842 -145394941 + L2 LINE L2 2282 2446 -973 2 693 1787 234 40 19 chr3 14205058 14205484 -145394299 + Lx6 LINE L1 6470 6904 -556 2 693 1695 158 24 55 chr3 14205484 14205812 -145393971 + ORR1A3 LTR MaLR 1 318 -8 2 693 521 295 0 0 chr3 14205815 14205937 -145393846 + Lx6 LINE L1 6905 7026 -434 2 693 1690 93 0 8 chr3 14205937 14206175 -145393608 - Lx LINE L1 -830 5824 5589 2 693 5307 118 21 5 chr3 14206175 14206986 -145392797 + Lx LINE L1 5829 6652 -2 2 693 925 280 54 4 chr3 14206989 14207247 -145392536 + Lx6 LINE L1 7014 7284 -176 2 693 460 343 17 56 chr3 14207423 14207697 -145392086 + RMER20B LTR ERVK 168 419 -223 2 693 1821 168 58 134 chr3 14208051 14208587 -145391196 - L1_Mur3 LINE L1 -179 5701 5207 2 693 5890 116 5 2 chr3 14208626 14210231 -145389552 + L1VL1 LINE L1 193 1804 -1894 2 693 9803 135 16 18 chr3 14210216 14210814 -145388969 + L1_Mm LINE L1 2878 3485 -2398 2 693 207 0 0 0 chr3 14210814 14210837 -145388946 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2 693 9803 135 16 18 chr3 14210837 14211934 -145387849 + L1_Mm LINE L1 3486 4568 -1315 2 693 272 56 0 0 chr3 14211935 14211971 -145387812 - MusHAL1 LINE L1 -2022 690 655 2 693 4963 170 33 4 chr3 14211969 14213512 -145386271 - L1Md_F LINE L1 -4261 1622 98 2 693 2915 70 8 0 chr3 14213556 14213941 -145385842 + L1_Mus2 LINE L1 5671 6058 -508 2 693 398 269 62 0 chr3 14214262 14214446 -145385337 + MuRRS4-int LTR ERV1 1383 1478 -6300 2 693 22 35 0 0 chr3 14214709 14214738 -145385045 + AT_rich Low_complexity Low_complexity 1 29 0 2 693 1159 118 5 26 chr3 14214903 14215094 -145384689 + B2_Mm1t SINE B2 1 187 -6 2 693 225 0 0 0 chr3 14215106 14215131 -145384652 + (A)n Simple_repeat Simple_repeat 1 25 0 2 693 1278 333 16 24 chr3 14215584 14216076 -145383707 + MuRRS4-int LTR ERV1 3536 4023 -1040 2 693 1261 100 97 25 chr3 14216944 14217188 -145382595 + L1_Mus2 LINE L1 6265 6533 -33 2 693 228 280 19 123 chr3 14217212 14217231 -145382552 + Lx6 LINE L1 5585 5599 -281 2 693 1324 238 93 3 chr3 14217231 14217576 -145382207 + ORR1C1 LTR MaLR 3 378 0 2 693 3805 262 60 38 chr3 14217576 14218219 -145381564 + ORR1C1-int LTR MaLR 1 652 -718 2 693 315 0 0 0 chr3 14218219 14218254 -145381529 + (TAA)n Simple_repeat Simple_repeat 2 36 0 2 693 3805 262 60 38 chr3 14218254 14218951 -145380832 + ORR1C1-int LTR MaLR 653 1370 0 2 693 1608 196 58 69 chr3 14218951 14219330 -145380453 + ORR1C1 LTR MaLR 1 375 -3 2 693 229 280 19 123 chr3 14219330 14219414 -145380369 + Lx6 LINE L1 5600 5682 -1778 2 693 262 271 10 20 chr3 14220500 14220598 -145379185 + (CAGAGA)n Simple_repeat Simple_repeat 5 101 0 2 693 22 0 0 0 chr3 14221099 14221121 -145378662 + AT_rich Low_complexity Low_complexity 1 22 0 2 693 225 0 0 0 chr3 14221332 14221357 -145378426 + (CAAA)n Simple_repeat Simple_repeat 4 28 0 2 693 4941 133 51 32 chr3 14221570 14222455 -145377328 - RLTR13D6 LTR ERVK 0 902 1 2 693 1934 217 34 18 chr3 14222637 14223424 -145376359 + Lx5 LINE L1 6206 7050 0 2 693 380 211 21 0 chr3 14224358 14224453 -145375330 + GA-rich Low_complexity Low_complexity 3 99 0 2 693 3977 199 27 50 chr3 14224454 14225516 -145374267 - MYSERV6-int LTR ERVK -66 8893 7856 2 693 277 352 48 77 chr3 14225581 14225747 -145374036 - RMER4A LTR ERVK -13 453 288 2 693 1386 117 120 4 chr3 14225747 14225988 -145373795 + L1_Mus3 LINE L1 6364 6632 -6 2 693 277 352 48 77 chr3 14225988 14226030 -145373753 - RMER4A LTR ERVK -179 287 251 2 693 1593 105 0 92 chr3 14226100 14226403 -145373380 + L1_Mus3 LINE L1 2554 2828 -3055 2 693 1579 138 40 13 chr3 14226381 14226683 -145373100 + L1_Mur1 LINE L1 3583 3892 -1994 2 693 6350 107 60 3 chr3 14226678 14228103 -145371680 + L1_Mus3 LINE L1 5147 6638 0 2 693 591 40 0 0 chr3 14228186 14228260 -145371523 + (TAGA)n Simple_repeat Simple_repeat 4 77 0 2 693 696 259 12 6 chr3 14228263 14228434 -145371349 - MYSERV-int LTR ERVK -1489 5061 4890 2 693 5222 127 24 1 chr3 14228465 14229272 -145370511 - Lx3A LINE L1 -6 6975 6151 2 693 1162 61 6 12 chr3 14229272 14229437 -145370346 + L1_Mur1 LINE L1 5102 5265 -621 2 693 3213 157 49 54 chr3 14229437 14230051 -145369732 - RLTR26 LTR ERVK 0 642 32 2 693 312 106 0 0 chr3 14230428 14230475 -145369308 - RLTR26 LTR ERVK -595 47 1 2 693 1798 106 116 0 chr3 14230475 14230786 -145368997 + L1_Mur1 LINE L1 5260 5606 -280 2 693 632 257 78 73 chr3 14230786 14231143 -145368640 - RLTR10D LTR ERVK 0 359 1 2 693 7772 268 25 29 chr3 14231143 14234418 -145365365 - IAP-d-int LTR ERVK 0 6542 3170 2 693 443 233 17 0 chr3 14234466 14234582 -145365201 - IAP-d-int LTR ERVK -6403 139 22 2 693 273 239 21 42 chr3 14234627 14234723 -145365060 - RLTR10D LTR ERVK 0 359 266 2 693 2707 86 15 132 chr3 14234734 14235272 -145364511 - IAPLTR2_Mm LTR ERVK 0 475 1 2 693 55557 10 1 5 chr3 14235272 14241769 -145358014 - IAPEz-int LTR ERVK 0 6481 8 2 693 2707 86 15 132 chr3 14241769 14242307 -145357476 - IAPLTR2_Mm LTR ERVK 0 475 1 2 693 564 292 39 62 chr3 14242307 14242566 -145357217 - RLTR10D LTR ERVK -106 253 1 2 693 2455 95 32 0 chr3 14242566 14242935 -145356848 + Lx3_Mus LINE L1 5598 5978 -1031 2 693 2561 43 6 6 chr3 14242949 14243275 -145356508 - IAPEY2_LTR LTR ERVK 0 357 32 2 693 979 137 27 6 chr3 14243285 14243468 -145356315 + Lx3_Mus LINE L1 5963 6149 -824 2 693 2310 267 70 48 chr3 14243469 14244122 -145355661 - MYSERV-int LTR ERVK -1647 4903 4226 2 693 222 37 0 0 chr3 14244122 14244149 -145355634 + (TA)n Simple_repeat Simple_repeat 1 27 0 2 693 2310 267 70 48 chr3 14244149 14244584 -145355199 - MYSERV-int LTR ERVK -2325 4225 3791 2 693 6241 57 29 0 chr3 14244679 14245464 -145354319 + RLTR13C2 LTR ERVK 1 808 0 2 693 812 136 227 0 chr3 14246187 14246341 -145353442 + B2_Mm2 SINE B2 2 190 -5 2 693 377 338 38 43 chr3 14246497 14246707 -145353076 + MLT1F1-int LTR MaLR 696 904 -585 2 693 482 352 63 37 chr3 14246754 14247102 -145352681 + MLT1F1-int LTR MaLR 1013 1369 -120 2 693 348 216 115 18 chr3 14247229 14247342 -145352441 + MLT1F1 LTR MaLR 96 219 -350 2 693 279 332 191 20 chr3 14247358 14247604 -145352179 + MLT1F1 LTR MaLR 279 566 -3 2 693 2824 90 19 49 chr3 14249577 14250008 -145349775 + RLTR9B2 LTR ERVK 3 420 0 3 693 1799 283 50 28 chr3 14250048 14250913 -145348870 + RMER16-int LTR ERVK 3096 3979 -1427 3 693 1985 299 40 20 chr3 14251148 14252134 -145347649 + RMER16-int LTR ERVK 3984 4988 -418 3 693 2592 84 0 0 chr3 14252137 14252495 -145347288 - L1_Mus3 LINE L1 -287 6351 5994 3 693 1565 84 13 9 chr3 14252496 14252724 -145347059 + L1_Mus3 LINE L1 6331 6559 -79 3 693 451 115 0 0 chr3 14252724 14252785 -145346998 - RMER17D2 LTR ERVK -748 61 1 3 693 3556 42 0 2 chr3 14253133 14253564 -145346219 - L1Md_F3 LINE L1 0 6584 6155 3 693 520 361 112 14 chr3 14253758 14254177 -145345606 - Lx8 LINE L1 -173 7300 6841 3 693 472 298 5 73 chr3 14254618 14254782 -145345001 + RMER1C Other Other 105 261 -1081 3 693 2147 109 88 26 chr3 14254782 14255167 -145344616 + RLTR9E LTR ERVK 1 409 0 3 693 472 298 5 73 chr3 14255167 14255208 -145344575 + RMER1C Other Other 262 296 -1046 3 693 561 348 32 0 chr3 14255478 14255665 -145344118 + RMER1C Other Other 564 756 -586 3 693 21 0 0 0 chr3 14255757 14255778 -145344005 + AT_rich Low_complexity Low_complexity 1 21 0 3 693 693 291 36 87 chr3 14255845 14255914 -145343869 + L1M2 LINE L1 5416 5481 -819 3 693 464 333 42 21 chr3 14255914 14256107 -145343676 + B3A SINE B2 2 198 0 3 693 693 291 36 87 chr3 14256107 14256451 -145343332 + L1M2 LINE L1 5482 5808 -492 3 693 23 33 0 0 chr3 14257012 14257042 -145342741 + AT_rich Low_complexity Low_complexity 1 30 0 3 693 5762 96 38 9 chr3 14257225 14258620 -145341163 - L1VL4 LINE L1 -1720 1839 400 3 693 18534 172 14 2 chr3 14258622 14258774 -145341009 + Lx2 LINE L1 2196 2352 -3534 3 693 411 21 0 0 chr3 14258774 14258822 -145340961 + (TA)n Simple_repeat Simple_repeat 2 49 0 3 693 18534 166 49 2 chr3 14258822 14263248 -145336535 + Lx2 LINE L1 2353 6983 -14 3 693 218 258 15 0 chr3 14263249 14263315 -145336468 + GA-rich Low_complexity Low_complexity 2 68 0 3 693 23 33 0 0 chr3 14263403 14263433 -145336350 + AT_rich Low_complexity Low_complexity 1 30 0 3 693 227 283 128 160 chr3 14264331 14264613 -145335170 + MLT1J LTR MaLR 112 384 -128 3 693 1931 288 52 25 chr3 14265096 14266431 -145333352 - RMER1B Other Other 0 1066 1 3 693 1190 284 77 50 chr3 14266415 14266960 -145332823 - RMER1B Other Other -559 507 44 3 693 657 355 9 0 chr3 14267461 14267675 -145332108 - B3 SINE B2 0 216 1 3 693 325 317 48 16 chr3 14267861 14267986 -145331797 + Charlie1a DNA MER1_type 46 174 -1281 3 693 243 313 8 74 chr3 14268218 14268339 -145331444 + Tigger9b DNA MER2_type 247 359 -265 3 693 618 317 11 16 chr3 14269031 14269220 -145330563 + B4 SINE B4 42 229 -63 3 693 245 241 0 78 chr3 14269240 14269330 -145330453 + (CATATA)n Simple_repeat Simple_repeat 1 83 0 3 693 35991 43 2 4 chr3 14269587 14275660 -145324123 - L1Md_T LINE L1 -11 6574 415 3 693 1637 27 0 0 chr3 14275661 14275848 -145323935 - B2_Mm1a SINE B2 -5 188 2 3 693 245 268 39 67 chr3 14275890 14275994 -145323789 - MLT1A LTR MaLR 0 374 274 3 693 2770 189 62 7 chr3 14276175 14276908 -145322875 + L1Md_F LINE L1 414 1112 -5448 3 693 225 158 0 0 chr3 14276918 14276956 -145322827 + L1Md_F LINE L1 201 238 -6281 3 693 6582 82 6 8 chr3 14276945 14277877 -145321906 + L1_Mus1 LINE L1 5637 6567 0 3 693 195 42 0 0 chr3 14278103 14278127 -145321656 + (TAA)n Simple_repeat Simple_repeat 2 25 0 3 693 1766 104 0 0 chr3 14278297 14278547 -145321236 + RLTR22_Mus LTR ERVK 1 250 -1558 3 693 476 195 12 0 chr3 14278547 14278668 -145321115 - L1_Mur2 LINE L1 -1953 3894 3772 3 693 293 152 0 0 chr3 14278731 14278790 -145320993 + RLTR19-int LTR ERVK 2355 2413 -3724 3 693 5893 118 18 22 chr3 14279184 14280164 -145319619 - Lx3B LINE L1 -125 6848 5873 3 693 3196 164 41 2 chr3 14280164 14280725 -145319058 - MERVK26-int LTR ERVK -1215 5704 5122 3 693 14795 161 29 7 chr3 14280721 14283376 -145316407 - MERVK26-int LTR ERVK -1971 4948 2235 3 693 7446 83 8 1 chr3 14283550 14285309 -145314474 + L1_Mus1 LINE L1 4793 6566 -1 3 86 1583 175 105 23 chr3 14286563 14286914 -145312869 - RMER10A LTR ERVL -1 441 62 3 694 31 26 0 0 chr3 14288180 14288218 -145311565 + AT_rich Low_complexity Low_complexity 1 38 0 3 694 421 352 78 0 chr3 14288285 14288413 -145311370 - RSINE1 SINE B4 -16 149 12 3 694 2037 212 37 98 chr3 14288790 14289328 -145310455 + RMER20A LTR ERVK 1 505 -11 3 694 30164 81 1 3 chr3 14289328 14294506 -145305277 + L1Md_F2 LINE L1 417 5586 -297 3 694 7825 58 3 5 chr3 14294507 14295504 -145304279 + L1Md_F2 LINE L1 5588 6582 0 3 694 216 135 0 0 chr3 14295520 14295557 -145304226 + (A)n Simple_repeat Simple_repeat 1 37 0 3 694 1928 175 21 3 chr3 14295955 14296282 -145303501 + RLTR25A LTR ERVK 1 333 -770 3 694 30260 96 13 24 chr3 14296283 14302659 -145297124 + Lx2A LINE L1 416 6730 -278 3 694 463 86 0 28 chr3 14302659 14302731 -145297052 + B1_Mur4 SINE Alu 80 149 -1 3 694 428 160 20 46 chr3 14302812 14302921 -145296862 + Lx2 LINE L1 6287 6396 -612 3 694 540 0 0 0 chr3 14303294 14303354 -145296429 + (TAAA)n Simple_repeat Simple_repeat 2 61 0 3 694 1560 115 21 0 chr3 14303367 14303601 -145296182 + Lx2 LINE L1 6407 6645 -352 3 694 1122 161 0 55 chr3 14303599 14303835 -145295948 + Lx2 LINE L1 6775 6997 0 3 694 3663 53 2 0 chr3 14303859 14304312 -145295471 + L1Md_F2 LINE L1 6129 6582 0 3 694 409 86 0 0 chr3 14304312 14304370 -145295413 + L1_Mm LINE L1 5801 5858 -25 3 694 36341 38 6 7 chr3 14304590 14310736 -145289047 - L1Md_A LINE L1 0 6582 447 3 694 303 283 0 0 chr3 14311107 14311199 -145288584 + L1_Mur3 LINE L1 4888 4979 -901 3 694 358 173 0 26 chr3 14311209 14311286 -145288497 + Lx7 LINE L1 6129 6203 -1493 3 694 3042 255 19 47 chr3 14311321 14312198 -145287585 + Lx7 LINE L1 6181 7033 -663 3 694 1430 291 101 26 chr3 14312198 14312302 -145287481 - RLTR26 LTR ERVK 0 642 531 3 694 471 112 0 0 chr3 14312302 14312382 -145287401 + (CTG)n Simple_repeat Simple_repeat 2 81 0 3 694 1430 251 83 25 chr3 14312382 14312842 -145286941 - RLTR26 LTR ERVK -112 530 5 3 694 794 170 6 91 chr3 14312856 14312906 -145286877 - MERVK26-int LTR ERVK -2 6917 6874 3 694 1431 147 137 124 chr3 14312906 14313294 -145286489 - RLTR9C LTR ERVK 0 393 1 3 694 794 170 6 91 chr3 14313294 14313346 -145286437 - MERVK26-int LTR ERVK -46 6873 6826 3 694 4050 63 62 6 chr3 14313346 14313876 -145285907 + LTRIS2 LTR ERV1 5 564 0 3 694 794 170 6 91 chr3 14313876 14313947 -145285836 - MERVK26-int LTR ERVK -94 6825 6758 3 694 238 34 83 33 chr3 14313947 14314007 -145285776 + (CAAA)n Simple_repeat Simple_repeat 4 66 0 3 694 771 135 128 0 chr3 14314007 14314148 -145285635 - MERVK26-int LTR ERVK -154 6765 6607 3 694 2609 205 33 24 chr3 14314155 14314664 -145285119 - RMER13A LTR ERVK -237 669 1 3 694 4054 152 62 20 chr3 14314674 14315746 -145284037 + Lx3B LINE L1 5090 6170 -803 3 694 589 194 26 141 chr3 14315747 14315939 -145283844 - L1_Mur2 LINE L1 -5958 754 585 3 694 3057 134 56 25 chr3 14316402 14316921 -145282862 - Lx3B LINE L1 0 6973 6439 3 694 908 272 12 20 chr3 14317688 14317932 -145281851 - Lx7 LINE L1 -5 7045 6804 3 694 229 369 71 32 chr3 14318192 14318318 -145281465 - B1F SINE Alu 0 149 19 3 694 716 297 50 45 chr3 14318747 14319145 -145280638 - RMER15-int LTR ERVL -566 4433 4034 3 694 1234 261 12 9 chr3 14319176 14319508 -145280275 - Lx6 LINE L1 -911 6549 6217 3 694 1519 268 137 17 chr3 14319512 14319869 -145279914 - Lx7 LINE L1 -1557 6139 5755 3 694 759 11 0 0 chr3 14319869 14319957 -145279826 + (CA)n Simple_repeat Simple_repeat 1 88 0 3 694 1519 237 217 19 chr3 14319957 14320475 -145279308 - Lx7 LINE L1 -126 5754 5125 3 694 180 0 0 0 chr3 14320489 14320509 -145279274 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 3 694 1009 76 8 0 chr3 14320509 14320640 -145279143 - B2_Mm2 SINE B2 -37 158 27 3 694 36955 50 22 4 chr3 14320654 14326896 -145272887 - L1Md_T LINE L1 -3 6579 266 3 694 303 77 0 0 chr3 14326897 14326936 -145272847 - B2_Mm2 SINE B2 -154 41 3 3 694 1414 201 55 38 chr3 14326937 14327335 -145272448 - Lx7 LINE L1 -748 5132 4728 3 694 281 237 20 20 chr3 14327325 14327424 -145272359 - Lx6 LINE L1 0 7460 7362 3 694 519 141 0 0 chr3 14327423 14327515 -145272268 - Lx7 LINE L1 -1146 4734 4643 3 694 414 39 0 0 chr3 14327515 14327567 -145272216 + (TG)n Simple_repeat Simple_repeat 1 52 0 3 694 6772 120 50 0 chr3 14327617 14328795 -145270988 - L1_Mm LINE L1 -3075 2808 1572 3 694 6824 71 3 4 chr3 14328801 14329738 -145270045 - L1Md_F2 LINE L1 0 6582 5647 3 694 3312 62 2 1 chr3 14329739 14330266 -145269517 - L1Md_A LINE L1 -4196 1687 1162 3 694 12710 171 6 38 chr3 14330390 14332658 -145267125 + L1Md_F2 LINE L1 985 3162 -2724 3 694 2949 98 0 5 chr3 14332658 14333067 -145266716 + L1Md_F2 LINE L1 6164 6570 -12 3 694 18821 100 0 42 chr3 14333067 14335519 -145264264 + L1Md_F2 LINE L1 3137 5586 -297 3 694 8111 48 7 0 chr3 14335519 14336508 -145263275 + L1Md_F2 LINE L1 5587 6582 0 3 694 30 27 0 0 chr3 14336509 14336546 -145263237 + AT_rich Low_complexity Low_complexity 1 37 0 3 694 4608 121 19 0 chr3 14336546 14336658 -145263125 + L1_Mus2 LINE L1 5123 5239 -644 3 694 189 0 0 0 chr3 14336658 14336679 -145263104 + (TA)n Simple_repeat Simple_repeat 1 21 0 3 694 6456 94 33 1 chr3 14336679 14337962 -145261821 + L1_Mus2 LINE L1 5240 6562 -4 3 694 467 162 7 8 chr3 14337973 14338124 -145261659 + MusHAL1 LINE L1 1158 1235 -1477 3 694 5556 138 5 0 chr3 14338121 14339237 -145260546 + Lx LINE L1 4863 5985 -669 3 694 357 272 19 10 chr3 14340008 14340112 -145259671 + RMER17C-int LTR ERVK 362 466 -2772 3 694 836 301 36 52 chr3 14340185 14340606 -145259177 + RodERV21-int LTR ERV1 736 1149 -3842 3 694 5180 271 28 26 chr3 14340638 14342198 -145257585 + RodERV21-int LTR ERV1 1121 2682 -2309 3 694 386 331 29 47 chr3 14342397 14342841 -145256942 + RodERV21-int LTR ERV1 3639 4074 -3017 3 694 1684 344 26 15 chr3 14343775 14344657 -145255126 + RodERV21-int LTR ERV1 3902 4793 -198 3 694 254 320 61 69 chr3 14344713 14344844 -145254939 + RMER4B LTR ERVK 347 476 -109 3 694 201 258 16 16 chr3 14345026 14345089 -145254694 + CT-rich Low_complexity Low_complexity 1 63 0 3 694 3600 148 33 49 chr3 14345165 14345853 -145253930 + Lx LINE L1 5977 6653 -1 3 694 5016 155 58 4 chr3 14345858 14346923 -145252860 + Lx2 LINE L1 5783 7008 0 3 694 261 57 0 0 chr3 14346977 14347012 -145252771 + (GGA)n Simple_repeat Simple_repeat 3 37 0 3 694 1877 211 134 18 chr3 14347012 14347224 -145252559 + L1_Mur2 LINE L1 3260 3471 -2406 3 694 222 37 0 0 chr3 14347224 14347251 -145252532 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 3 694 1877 211 134 18 chr3 14347251 14347597 -145252186 + L1_Mur2 LINE L1 3472 3882 -1995 3 694 405 0 0 0 chr3 14347600 14347645 -145252138 + (TAAA)n Simple_repeat Simple_repeat 4 48 0 3 694 1305 315 24 63 chr3 14347664 14348200 -145251583 + Lx5 LINE L1 6523 7037 -13 3 694 942 175 118 44 chr3 14348249 14348589 -145251194 - L1_Mur3 LINE L1 -3461 2419 2055 3 694 283 280 22 15 chr3 14348639 14348773 -145251010 - L1_Mur3 LINE L1 -3819 2061 1927 3 694 403 234 29 15 chr3 14348864 14349048 -145250735 + L1VL1 LINE L1 91 385 -6037 3 694 475 242 15 8 chr3 14349100 14349233 -145250550 + L1VL4 LINE L1 670 803 -5813 3 694 3519 132 3 42 chr3 14349241 14350364 -145249419 + L1VL4 LINE L1 725 1806 -4077 3 694 822 103 24 0 chr3 14350344 14350470 -145249313 + L1VL4 LINE L1 4037 4165 -1718 3 694 4595 91 9 9 chr3 14350470 14351121 -145248662 + L1_Mus1 LINE L1 5917 6567 0 3 694 1929 174 88 51 chr3 14351132 14351191 -145248592 - L1_Mur3 LINE L1 -4007 1873 1822 3 694 231 36 0 0 chr3 14351191 14351219 -145248564 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 4 694 1976 205 107 40 chr3 14351219 14352404 -145247379 - L1_Mur3 LINE L1 -4059 1821 551 3 694 1889 227 8 18 chr3 14352497 14352781 -145247002 + ORR1B1 LTR MaLR 1 284 -110 4 694 773 223 151 42 chr3 14352781 14353113 -145246670 + RLTR9A LTR ERVK 1 368 0 4 694 1889 227 8 18 chr3 14353113 14353218 -145246565 + ORR1B1 LTR MaLR 285 386 -8 4 694 320 294 62 0 chr3 14353262 14353456 -145246327 - ERVL-int LTR ERVL -1472 4289 3977 4 694 5268 120 12 33 chr3 14354114 14355906 -145243877 + ETnERV2-int LTR ERVK 1742 3402 -2004 4 694 6062 150 11 40 chr3 14355875 14356947 -145242836 + ETnERV2-int LTR ERVK 6127 7167 -239 4 694 342 273 249 34 chr3 14356947 14357281 -145242502 + RLTR13D6 LTR ERVK 127 531 -371 4 694 478 53 25 74 chr3 14357284 14357365 -145242418 + ETnERV2-int LTR ERVK 7327 7403 -3 4 694 857 213 22 116 chr3 14357367 14357722 -145242061 + RLTRETN_Mm LTR ERVK 1 322 0 4 694 7011 59 0 1 chr3 14357722 14358633 -145241150 + L1_Mus1 LINE L1 5658 6567 0 4 694 783 246 50 104 chr3 14358995 14359276 -145240507 + ORR1C1 LTR MaLR 1 257 -113 4 694 1119 130 0 0 chr3 14359276 14359438 -145240345 - Lx2B LINE L1 -162 6838 6677 4 694 355 302 101 48 chr3 14359816 14360084 -145239699 + MTE-int LTR MaLR 1157 1438 -142 4 694 345 125 0 0 chr3 14360086 14360134 -145239649 - Lx2B LINE L1 -222 6778 6731 4 694 394 248 116 45 chr3 14360523 14360747 -145239036 + MTA_Mm-int LTR MaLR 935 1174 -84 4 694 1229 98 6 6 chr3 14360743 14360917 -145238866 - B2_Mm2 SINE B2 -20 175 2 4 694 266 214 89 11 chr3 14360918 14361008 -145238775 + MTA_Mm-int LTR MaLR 1162 1258 0 4 694 188 32 97 0 chr3 14361027 14361058 -145238725 + (GTTTG)n Simple_repeat Simple_repeat 1 34 0 4 694 3408 30 5 0 chr3 14361058 14361452 -145238331 + MTA_Mm LTR MaLR 1 396 0 4 694 486 0 0 0 chr3 14361452 14361506 -145238277 + (GTTTG)n Simple_repeat Simple_repeat 2 55 0 4 694 1392 237 74 11 chr3 14361506 14361869 -145237914 + MTD LTR MaLR 20 405 -14 4 694 287 333 67 22 chr3 14361978 14362113 -145237670 + Lx8 LINE L1 7188 7328 -145 4 694 494 138 22 22 chr3 14362246 14362335 -145237448 + B1_Mus2 SINE Alu 59 147 0 4 694 187 297 0 51 chr3 14363563 14363641 -145236142 - MER5B DNA MER1_type -62 116 43 4 694 388 215 9 36 chr3 14364731 14364842 -145234941 + Lx9 LINE L1 7361 7468 -176 4 694 25 51 0 0 chr3 14365976 14366015 -145233768 + AT_rich Low_complexity Low_complexity 1 39 0 4 694 378 143 0 0 chr3 14366084 14366147 -145233636 + (TA)n Simple_repeat Simple_repeat 1 63 0 4 694 1901 233 99 17 chr3 14366305 14366899 -145232884 - Lx9 LINE L1 -31 7613 6971 4 694 195 154 15 30 chr3 14366993 14367060 -145232723 + (TATAA)n Simple_repeat Simple_repeat 3 68 0 4 694 9124 231 40 43 chr3 14367251 14368325 -145231458 - L1_Mur3 LINE L1 -21 5859 4753 4 694 588 29 0 0 chr3 14368325 14368395 -145231388 + (TA)n Simple_repeat Simple_repeat 2 71 0 4 694 9124 231 40 43 chr3 14368395 14369850 -145229933 - L1_Mur3 LINE L1 -1128 4752 3321 4 694 182 62 31 0 chr3 14369850 14369882 -145229901 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 4 694 1115 65 0 0 chr3 14369882 14370021 -145229762 - B1_Mus1 SINE Alu -9 139 1 4 694 9124 231 40 43 chr3 14370021 14370586 -145229197 - L1_Mur3 LINE L1 -2560 3320 2772 4 694 409 261 107 50 chr3 14371587 14371708 -145228075 + RSINE1 SINE B4 37 164 -1 4 694 714 354 54 23 chr3 14372210 14372518 -145227265 + ORR1E LTR MaLR 1 345 -34 4 694 188 111 0 27 chr3 14374149 14374186 -145225597 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 4 694 21 72 0 28 chr3 14374249 14374271 -145225512 + AT_rich Low_complexity Low_complexity 1 21 0 4 694 4816 75 6 6 chr3 14374271 14374902 -145224881 - L1_Mus2 LINE L1 -2 6564 5934 4 694 21 72 0 28 chr3 14374902 14374950 -145224833 + AT_rich Low_complexity Low_complexity 1 48 0 4 694 371 121 11 88 chr3 14374956 14375047 -145224736 - L1Md_F2 LINE L1 -1 6581 6498 4 694 8460 94 1 5 chr3 14375060 14376321 -145223462 - L1_Mm LINE L1 -567 5316 4061 4 694 28 61 0 0 chr3 14377615 14377664 -145222119 + AT_rich Low_complexity Low_complexity 1 49 0 4 694 473 265 18 41 chr3 14379511 14379680 -145220103 + MER5A1 DNA MER1_type 1 165 -1 4 694 309 261 56 22 chr3 14379771 14379861 -145219922 + MIRb SINE MIR 60 152 -116 4 694 314 296 93 25 chr3 14380285 14380403 -145219380 - ID_B1 SINE B4 -87 137 12 4 694 203 294 79 56 chr3 14380465 14380591 -145219192 + L3 LINE CR1 4110 4238 -251 4 694 200 238 133 71 chr3 14380752 14380865 -145218918 + MER5A DNA MER1_type 33 152 -37 4 694 468 0 0 0 chr3 14380890 14380942 -145218841 + (TG)n Simple_repeat Simple_repeat 2 53 0 4 694 297 0 0 0 chr3 14381122 14381155 -145218628 + (CA)n Simple_repeat Simple_repeat 2 34 0 4 694 294 239 45 0 chr3 14381155 14381222 -145218561 - PB1D10 SINE Alu -7 110 41 4 694 510 17 0 0 chr3 14382382 14382441 -145217342 + (CA)n Simple_repeat Simple_repeat 1 59 0 4 694 1110 114 18 0 chr3 14384683 14384849 -145214934 + B2_Mm2 SINE B2 19 187 -8 4 694 231 317 12 0 chr3 14384955 14385037 -145214746 + Lx8 LINE L1 7234 7316 -157 4 694 572 215 60 0 chr3 14385234 14385383 -145214400 - Lx6 LINE L1 -4 7456 7299 4 694 9114 10 0 0 chr3 14385486 14387276 -145212507 - L1Md_T LINE L1 0 6582 4793 4 694 257 259 58 87 chr3 14387330 14387537 -145212246 + L1M2 LINE L1 4540 4740 -1403 4 694 2352 291 70 21 chr3 14387534 14388127 -145211656 + Lx8 LINE L1 6348 6956 -517 4 694 228 35 0 0 chr3 14388127 14388156 -145211627 + (CA)n Simple_repeat Simple_repeat 1 29 0 4 694 2352 291 70 21 chr3 14388156 14388479 -145211304 + Lx8 LINE L1 6957 7308 -165 4 694 236 321 114 24 chr3 14388570 14388825 -145210958 + L1M2 LINE L1 5377 5654 -637 4 694 1286 167 97 124 chr3 14389671 14390075 -145209708 - RLTR9C LTR ERVK 0 393 1 4 694 1624 31 11 0 chr3 14390382 14390573 -145209210 + B2_Mm1a SINE B2 1 193 0 4 694 1151 112 6 0 chr3 14392068 14392247 -145207536 + (TTC)n Simple_repeat Simple_repeat 1 180 0 4 694 632 200 33 15 chr3 14392272 14392542 -145207241 + CT-rich Low_complexity Low_complexity 1 275 0 4 694 1039 115 67 0 chr3 14392784 14392949 -145206834 + L1_Mus3 LINE L1 6452 6627 -11 4 694 360 0 0 0 chr3 14392949 14392989 -145206794 + (GA)n Simple_repeat Simple_repeat 2 41 0 4 694 3023 37 0 3 chr3 14393597 14393952 -145205831 + IAPEY2_LTR LTR ERVK 1 354 -3 4 694 9133 121 11 24 chr3 14393953 14395585 -145204198 + IAPEY3-int LTR ERVK 18 1982 -5698 4 694 3272 76 11 0 chr3 14395562 14396009 -145203774 + IAPEY3-int LTR ERVK 2238 2689 -4991 4 694 182 377 44 0 chr3 14396024 14396138 -145203645 + L3b LINE CR1 335 453 -29 4 694 2739 117 26 33 chr3 14396138 14396790 -145202993 + IAPEY3-int LTR ERVK 6984 7581 0 4 694 3029 56 0 0 chr3 14396790 14397147 -145202636 + IAPEY2_LTR LTR ERVK 1 357 0 4 694 249 0 73 0 chr3 14397896 14397937 -145201846 + (CAAAAA)n Simple_repeat Simple_repeat 2 45 0 4 694 785 149 12 12 chr3 14398020 14398183 -145201600 - L1_Mus4 LINE L1 -8 6628 6466 4 694 3223 110 6 0 chr3 14398183 14398672 -145201111 + L1_Mm LINE L1 5306 5797 -86 4 694 691 198 18 12 chr3 14398670 14398834 -145200949 - L1Md_F LINE L1 -5744 775 611 4 694 222 343 0 0 chr3 14399545 14399615 -145200168 - L2a LINE L2 -2 3424 3355 4 694 460 217 194 26 chr3 14400512 14400619 -145199164 - Lx9 LINE L1 -26 7618 7479 4 694 459 52 0 0 chr3 14400619 14400677 -145199106 + (TA)n Simple_repeat Simple_repeat 2 59 0 4 694 460 217 194 26 chr3 14400677 14400801 -145198982 - Lx9 LINE L1 -166 7478 7349 4 694 2491 199 122 21 chr3 14400846 14401562 -145198221 + RLTR25B LTR ERVK 55 858 -170 4 694 257 107 86 35 chr3 14401730 14401788 -145197995 + U7 snRNA snRNA 1 61 -2 4 694 257 234 47 156 chr3 14401903 14402095 -145197688 + RLTR25B LTR ERVK 834 1004 -99 4 694 31808 63 11 1 chr3 14402160 14407071 -145192712 + L1Md_F3 LINE L1 670 5585 -298 4 694 8027 32 16 2 chr3 14407073 14408043 -145191740 + L1Md_F3 LINE L1 5588 6570 -14 4 694 5445 242 98 32 chr3 14408090 14410303 -145189480 - Lx7 LINE L1 -292 7404 5039 4 694 1824 132 15 66 chr3 14410308 14410642 -145189141 - ORR1A4 LTR MaLR -8 321 5 4 694 2964 165 46 3 chr3 14410647 14411256 -145188527 - Lx7 LINE L1 -839 5041 4407 4 694 21491 90 19 11 chr3 14411266 14415741 -145184042 - Lx3_Mus LINE L1 0 7009 2505 4 694 4480 95 13 4 chr3 14415740 14416416 -145183367 + L1_Mm LINE L1 5115 5796 -87 4 694 2810 77 0 0 chr3 14416414 14416815 -145182968 - L1_Mm LINE L1 -482 5401 5001 4 694 454 103 0 30 chr3 14416819 14416919 -145182864 + L1Md_F2 LINE L1 6484 6580 -2 4 694 5777 95 15 4 chr3 14416916 14417760 -145182023 + L1_Mus3 LINE L1 5783 6636 -2 4 86 1062 78 96 0 chr3 14417772 14417938 -145181845 - Lx3_Mus LINE L1 -3364 2522 2341 4 695 1058 93 0 0 chr3 14417957 14418096 -145181687 - B1_Mus2 SINE Alu -7 140 2 4 695 2674 161 128 50 chr3 14418109 14419215 -145180568 - Lx3_Mus LINE L1 -4455 1431 5 4 695 4488 210 118 136 chr3 14419216 14420556 -145179227 - Lx7 LINE L1 -1458 4422 2950 4 695 259 155 32 65 chr3 14420556 14420618 -145179165 + RLTR19B LTR ERVK 1 60 -446 4 695 1158 188 0 24 chr3 14420601 14420814 -145178969 + RLTR19B LTR ERVK 508 715 0 4 695 4488 210 118 136 chr3 14420814 14421607 -145178176 - Lx7 LINE L1 -1458 2949 2076 4 695 1882 122 54 13 chr3 14421928 14422244 -145177539 - ORR1A4 LTR MaLR 0 329 1 4 695 1787 335 58 21 chr3 14422301 14422425 -145177358 - Lx8 LINE L1 -5 7468 7323 4 695 982 92 13 0 chr3 14422425 14422577 -145177206 + (TC)n Simple_repeat Simple_repeat 1 154 0 4 695 1787 335 58 21 chr3 14422577 14423465 -145176318 - Lx8 LINE L1 -151 7322 6418 4 695 745 273 67 73 chr3 14423610 14423938 -145175845 - RMER20B LTR ERVK -68 559 234 4 695 23 33 0 0 chr3 14424249 14424279 -145175504 + AT_rich Low_complexity Low_complexity 1 30 0 4 695 1095 155 0 6 chr3 14424891 14425066 -145174717 + B2_Mm2 SINE B2 1 174 -21 4 695 321 360 48 62 chr3 14425429 14425574 -145174209 + RSINE1 SINE B4 1 143 -22 4 695 699 360 34 8 chr3 14426108 14426424 -145173359 + ORR1E LTR MaLR 3 345 -34 4 695 216 0 0 0 chr3 14427307 14427331 -145172452 + (TTG)n Simple_repeat Simple_repeat 2 25 0 4 695 349 129 0 28 chr3 14427614 14427686 -145172097 + (TTG)n Simple_repeat Simple_repeat 2 71 0 4 695 233 288 0 0 chr3 14427686 14427749 -145172034 - ID4 SINE ID -9 74 12 4 695 3710 159 49 57 chr3 14429134 14430209 -145169574 + RLTR13D1 LTR ERVK 1 1023 0 4 695 904 136 44 22 chr3 14430212 14430392 -145169391 + ETnERV2-int LTR ERVK 3 186 -5622 4 695 3489 124 14 59 chr3 14430669 14431463 -145168320 + ETnERV2-int LTR ERVK 186 787 -5021 4 695 4934 111 69 9 chr3 14431454 14432329 -145167454 + ETnERV2-int LTR ERVK 2494 3420 -3986 4 695 348 171 0 26 chr3 14432335 14432413 -145167370 + ETnERV3-int LTR ERVK 3278 3353 -2053 4 695 4397 162 57 9 chr3 14432416 14433301 -145166482 + ETnERV3-int LTR ERVK 4463 5389 -419 4 695 1529 141 4 0 chr3 14433301 14433550 -145166233 + ETnERV3-int LTR ERVK 5529 5778 -30 4 695 3724 148 45 60 chr3 14433565 14434638 -145165145 + RLTR13D1 LTR ERVK 1 1023 0 4 695 33 43 0 0 chr3 14436298 14436345 -145163438 + AT_rich Low_complexity Low_complexity 1 47 0 4 695 8190 113 2 0 chr3 14436863 14438574 -145161209 - L1_Mus1 LINE L1 -307 6260 4545 4 695 15466 117 13 8 chr3 14438545 14441689 -145158094 - L1_Mus1 LINE L1 -2168 3715 555 4 695 282 368 24 77 chr3 14441738 14441947 -145157836 + RMER12 LTR ERVK 1010 1207 -115 4 695 1696 143 24 63 chr3 14443078 14443413 -145156370 - RLTRETN_Mm LTR ERVK 0 322 1 4 695 195 42 0 0 chr3 14443659 14443683 -145156100 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 4 695 650 298 44 0 chr3 14444570 14444775 -145155008 + B3 SINE B2 3 216 0 4 695 1247 89 27 16 chr3 14444880 14445063 -145154720 - B2_Mm2 SINE B2 -10 185 1 4 695 2636 105 25 10 chr3 14445951 14446354 -145153429 - RLTR9E LTR ERVK 0 409 1 5 695 368 85 17 0 chr3 14446373 14446432 -145153351 - ETnERV2-int LTR ERVK -16 7390 7331 5 695 2286 179 27 33 chr3 14446646 14447271 -145152512 - ETnERV2-int LTR ERVK -1181 6225 5848 5 695 30454 26 4 8 chr3 14447271 14452077 -145147706 + L1Md_T LINE L1 233 5017 -866 5 695 7947 37 0 3 chr3 14452087 14453038 -145146745 + L1Md_T LINE L1 5635 6582 0 5 695 10775 95 4 1 chr3 14453038 14454542 -145145241 - ETnERV2-int LTR ERVK -1549 5857 4349 5 695 30819 79 3 72 chr3 14454548 14459524 -145140259 + L1Md_F3 LINE L1 667 5586 -297 5 695 7740 52 6 2 chr3 14459524 14460504 -145139279 + L1Md_F3 LINE L1 5587 6570 -14 5 695 30819 72 2 52 chr3 14460504 14461557 -145138226 + L1Md_F3 LINE L1 5587 6291 -293 5 695 35810 18 0 7 chr3 14461553 14466744 -145133039 + L1Md_A LINE L1 437 5586 -297 5 695 9044 3 0 0 chr3 14466744 14467740 -145132043 + L1Md_A LINE L1 5587 6582 0 5 695 22163 14 0 0 chr3 14467747 14470423 -145129360 + L1Md_A LINE L1 2912 5586 -297 5 695 8009 43 1 5 chr3 14470423 14471411 -145128372 + L1Md_A LINE L1 5587 6570 -12 5 695 3867 111 57 7 chr3 14471413 14471848 -145127935 - ETnERV2-int LTR ERVK -3041 4365 3933 5 695 701 51 10 0 chr3 14471848 14471946 -145127837 + (TAGA)n Simple_repeat Simple_repeat 3 101 0 5 695 3867 111 57 7 chr3 14471946 14472129 -145127654 - ETnERV2-int LTR ERVK -3474 3932 3717 5 695 2034 113 84 6 chr3 14472130 14472487 -145127296 - L1_Mus4 LINE L1 -61 6575 6191 5 695 30990 78 4 16 chr3 14472544 14477686 -145122097 + L1Md_F2 LINE L1 511 5586 -297 5 695 7907 53 10 0 chr3 14477686 14478672 -145121111 + L1Md_F2 LINE L1 5587 6582 0 5 695 519 45 0 0 chr3 14479054 14479120 -145120663 + (TC)n Simple_repeat Simple_repeat 2 67 0 5 695 549 0 0 0 chr3 14479120 14479180 -145120603 + (TG)n Simple_repeat Simple_repeat 2 62 0 5 695 1182 91 30 25 chr3 14479414 14479617 -145120166 - Lx3C LINE L1 -957 6019 5816 5 695 6062 127 16 6 chr3 14479617 14480555 -145119228 + Lx3C LINE L1 6028 6974 -2 5 695 29 60 0 0 chr3 14481747 14481797 -145117986 + AT_rich Low_complexity Low_complexity 1 50 0 5 695 428 255 79 18 chr3 14482264 14482428 -145117355 - Lx6 LINE L1 0 7460 7287 5 695 1136 236 77 15 chr3 14482484 14482757 -145117026 - MTD LTR MaLR -15 404 131 5 695 26775 97 7 88 chr3 14482782 14484625 -145115158 - L1Md_F2 LINE L1 -4 6578 4765 5 695 3845 63 2 8 chr3 14484625 14485124 -145114659 - RLTR1C LTR ERV1 -7 496 1 5 695 26775 97 7 88 chr3 14485124 14489552 -145110231 - L1Md_F2 LINE L1 -4 4764 403 5 695 16005 177 22 5 chr3 14489553 14492466 -145107317 - L1_Mur1 LINE L1 -748 5138 2185 5 695 315 0 0 0 chr3 14492466 14492501 -145107282 + (TTTA)n Simple_repeat Simple_repeat 4 38 0 5 695 16005 177 22 5 chr3 14492501 14492931 -145106852 - L1_Mur1 LINE L1 -3702 2184 1741 5 695 4493 143 11 32 chr3 14492902 14493617 -145106166 - L1VL4 LINE L1 -2498 1061 363 5 695 4982 137 10 21 chr3 14493617 14494481 -145105302 - RLTR13A LTR ERVK 0 855 1 5 695 4493 158 15 45 chr3 14494481 14494761 -145105022 - L1VL4 LINE L1 -5940 362 94 5 695 444 172 11 0 chr3 14494765 14494858 -145104925 - Lx6 LINE L1 -4 7456 7363 5 695 2904 279 134 20 chr3 14494864 14495979 -145103804 - Lx6 LINE L1 -598 6862 5623 5 695 1881 198 44 9 chr3 14496004 14496462 -145103321 + L1_Mur3 LINE L1 5058 5531 -349 5 695 967 323 21 14 chr3 14496480 14496766 -145103017 - RCHARR1 DNA MER1_type -684 290 3 5 695 362 308 92 8 chr3 14498852 14498983 -145100800 - MLT1H LTR MaLR -377 172 31 5 695 21 0 0 0 chr3 14499758 14499779 -145100004 + AT_rich Low_complexity Low_complexity 1 21 0 5 695 21 0 0 0 chr3 14499952 14499973 -145099810 + AT_rich Low_complexity Low_complexity 1 21 0 5 695 1322 167 37 0 chr3 14500302 14500547 -145099236 + RMER6C LTR ERVK 437 690 0 1 695 1183 145 0 5 chr3 14500715 14500902 -145098881 - B2_Mm2 SINE B2 -8 187 2 2 695 198 0 0 0 chr3 14500937 14500959 -145098824 + (CAAAAA)n Simple_repeat Simple_repeat 2 23 0 3 695 1082 80 0 0 chr3 14501624 14501762 -145098021 + B1_Mus1 SINE Alu 1 138 -10 4 695 266 0 0 29 chr3 14501762 14501797 -145097986 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 5 695 181 239 103 52 chr3 14502634 14502731 -145097052 + L3 LINE CR1 924 1025 -3464 6 695 579 74 0 0 chr3 14503691 14503772 -145096011 + (TG)n Simple_repeat Simple_repeat 2 82 0 7 695 1305 232 74 33 chr3 14503807 14504200 -145095583 + Lx7 LINE L1 6095 6503 -1193 8 695 344 315 46 69 chr3 14504210 14504558 -145095225 + L1_Mur3 LINE L1 3507 3846 -2034 9 695 217 300 0 0 chr3 14504882 14504932 -145094851 + polypurine Low_complexity Low_complexity 5 54 0 1 695 273 348 17 0 chr3 14506045 14506160 -145093623 + MER58B DNA MER1_type 222 338 -3 1 695 414 0 0 0 chr3 14506474 14506520 -145093263 + (CA)n Simple_repeat Simple_repeat 2 47 0 1 695 235 193 85 34 chr3 14506585 14506644 -145093139 - MTC LTR MaLR 0 407 346 1 695 183 162 0 0 chr3 14506671 14506708 -145093075 + T-rich Low_complexity Low_complexity 1 37 0 1 695 3062 79 18 48 chr3 14506713 14507167 -145092616 - L1_Mus2 LINE L1 0 6566 6127 1 695 3719 87 9 0 chr3 14507188 14507715 -145092068 + L1_Mus2 LINE L1 5587 6118 -448 1 695 1012 168 70 20 chr3 14507715 14507916 -145091867 - MTC LTR MaLR -210 211 1 1 695 30 45 0 0 chr3 14507996 14508040 -145091743 + AT_rich Low_complexity Low_complexity 1 44 0 1 695 225 0 0 0 chr3 14508102 14508127 -145091656 + (CA)n Simple_repeat Simple_repeat 2 26 0 1 695 677 260 36 55 chr3 14508311 14508620 -145091163 - L1MA4 LINE L1 -364 5936 5634 1 695 1067 216 137 6 chr3 14508676 14509012 -145090771 + L1_Mur3 LINE L1 1530 1909 -3971 2 695 1814 131 74 0 chr3 14509012 14509309 -145090474 + ORR1A2 LTR MaLR 1 319 -8 2 695 416 250 36 18 chr3 14509309 14509476 -145090307 + L1_Mur3 LINE L1 1899 2068 -3812 2 695 3436 70 35 0 chr3 14509670 14510127 -145089656 + L1_Mus1 LINE L1 6095 6567 0 2 695 198 0 51 51 chr3 14510152 14510191 -145089592 + (TAAAAA)n Simple_repeat Simple_repeat 2 40 0 2 695 276 302 69 80 chr3 14510192 14510480 -145089303 + RLTR15 LTR ERVK 50 334 -25 2 695 1067 216 25 64 chr3 14510497 14510854 -145088929 + L1_Mur3 LINE L1 2061 2403 -3477 2 695 4336 196 54 59 chr3 14512161 14512752 -145087031 + L1_Mur3 LINE L1 2401 2985 -2895 2 695 216 0 0 0 chr3 14512752 14512776 -145087007 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 2 695 4336 196 54 59 chr3 14512776 14513513 -145086270 + L1_Mur3 LINE L1 2986 3721 -2159 2 695 5081 119 48 32 chr3 14513514 14514680 -145085103 + L1_Mur3 LINE L1 5037 5704 -179 2 695 267 103 0 0 chr3 14514680 14514719 -145085064 + (CA)n Simple_repeat Simple_repeat 2 40 0 2 695 2373 195 63 33 chr3 14514719 14515388 -145084395 + L1_Mur3 LINE L1 3587 4255 -1628 2 695 8527 99 22 6 chr3 14515847 14517912 -145081871 - Lx3_Mus LINE L1 -251 6758 4651 2 695 4359 90 2 1 chr3 14517910 14518715 -145081068 - L1_Mus1 LINE L1 -506 6061 5256 2 695 21 0 0 0 chr3 14518774 14518795 -145080988 + AT_rich Low_complexity Low_complexity 1 21 0 3 695 5309 206 60 56 chr3 14518921 14520299 -145079484 + L1_Mur3 LINE L1 4368 5751 -129 2 695 665 252 35 39 chr3 14520311 14520567 -145079216 + L1VL1 LINE L1 237 491 -5931 3 695 348 257 55 9 chr3 14520589 14520699 -145079084 + L1Md_F LINE L1 566 680 -5839 3 695 2196 139 25 8 chr3 14520695 14521105 -145078678 + Lx5 LINE L1 5535 5956 -1094 3 695 3864 206 26 16 chr3 14521104 14521867 -145077916 + Lx5 LINE L1 6280 7050 0 3 695 1024 298 96 64 chr3 14521874 14522902 -145076881 - L1_Mur3 LINE L1 -3154 2726 1666 3 695 414 320 65 103 chr3 14522972 14523484 -145076299 - RLTR40 LTR ERVK -276 541 50 3 695 512 289 57 37 chr3 14524162 14524514 -145075269 + L1_Mur3 LINE L1 4097 4455 -1425 3 695 910 245 31 19 chr3 14524855 14525179 -145074604 + L1_Mur3 LINE L1 876 1203 -6509 3 695 680 128 0 9 chr3 14525179 14525289 -145074494 - ORR1C2 LTR MaLR -275 109 1 3 695 301 237 0 0 chr3 14525289 14525348 -145074435 - Lx7 LINE L1 -1802 5894 5836 3 695 867 176 6 0 chr3 14525348 14525507 -145074276 - L1_Mur3 LINE L1 -1698 4182 4023 4 695 1323 225 116 57 chr3 14525507 14525946 -145073837 - RLTR21 LTR ERVK 0 1572 1108 4 695 2005 142 12 12 chr3 14525946 14526267 -145073516 + ORR1A4 LTR MaLR 1 321 -8 4 695 191 62 62 0 chr3 14526268 14526300 -145073483 + (CATATA)n Simple_repeat Simple_repeat 2 35 0 4 695 4732 164 112 100 chr3 14526302 14527073 -145072710 - RMER12B LTR ERVK -153 1251 489 4 695 2257 86 158 0 chr3 14527073 14527422 -145072361 - Lx LINE L1 0 6654 6251 4 695 4732 164 112 100 chr3 14527422 14527886 -145071897 - RMER12B LTR ERVK -916 488 1 4 695 454 163 47 0 chr3 14527886 14527972 -145071811 - L1_Mur3 LINE L1 -1852 4028 3939 4 695 335 286 43 26 chr3 14528360 14528475 -145071308 - RLTR16 LTR ERVK -349 156 40 4 695 2008 158 33 80 chr3 14528504 14528957 -145070826 - L1_Mur3 LINE L1 -1935 3945 3514 4 695 1203 108 23 0 chr3 14528957 14529133 -145070650 + B2_Mm2 SINE B2 2 181 -14 4 695 243 0 0 0 chr3 14529137 14529164 -145070619 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 4 695 927 163 0 0 chr3 14529164 14529330 -145070453 + GA-rich Low_complexity Low_complexity 3 168 0 4 695 4189 194 49 24 chr3 14529346 14530371 -145069412 - L1_Mur3 LINE L1 -2353 3527 2478 4 695 1261 203 133 7 chr3 14530373 14530784 -145068999 - L1_Mur3 LINE L1 -7094 634 56 4 695 440 328 117 24 chr3 14531053 14531300 -145068483 - B4 SINE B4 -22 270 1 5 695 603 138 14 28 chr3 14531526 14531668 -145068115 + CT-rich Low_complexity Low_complexity 2 141 0 5 695 422 109 10 29 chr3 14531869 14531973 -145067810 + (CA)n Simple_repeat Simple_repeat 1 102 0 5 695 216 0 0 0 chr3 14534967 14534991 -145064792 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 5 695 23 54 0 0 chr3 14536225 14536262 -145063521 + AT_rich Low_complexity Low_complexity 1 37 0 5 695 297 250 219 0 chr3 14536839 14536999 -145062784 + MER3 DNA MER1_type 9 203 -6 5 695 357 62 0 0 chr3 14537596 14537644 -145062139 + (TTCC)n Simple_repeat Simple_repeat 1 48 0 5 695 529 254 69 180 chr3 14537645 14537890 -145061893 - ID_B1 SINE B4 -3 221 4 5 695 1922 154 7 101 chr3 14537970 14538375 -145061408 - ORR1B2 LTR MaLR 0 367 1 5 695 300 215 0 71 chr3 14538698 14538768 -145061015 + B2_Mm2 SINE B2 59 123 -72 5 695 570 228 0 9 chr3 14538937 14539052 -145060731 + RSINE1 SINE B4 19 132 -33 6 695 276 242 0 83 chr3 14539076 14539148 -145060635 + B3 SINE B2 1 66 -132 6 695 347 294 109 14 chr3 14540348 14540605 -145059178 - L1M4 LINE L1 -407 5777 5492 6 695 314 311 94 0 chr3 14540605 14540711 -145059072 - PB1D10 SINE Alu -1 116 1 6 695 347 294 109 14 chr3 14540711 14540746 -145059037 - L1M4 LINE L1 -693 5491 5458 6 695 18454 144 27 35 chr3 14540830 14545227 -145054556 - Lx LINE L1 -1 6653 2296 6 695 613 304 36 111 chr3 14545846 14546205 -145053578 + MER2 DNA MER2_type 1 332 -13 6 695 311 301 100 54 chr3 14546242 14546372 -145053411 - MamRep605 Unknown Unknown -236 640 505 6 695 1101 173 40 0 chr3 14546941 14547143 -145052640 - B3 SINE B2 -6 210 1 6 695 473 216 117 22 chr3 14548278 14548415 -145051368 + Lx5 LINE L1 6578 6727 -323 6 695 495 234 98 37 chr3 14548414 14548627 -145051156 + Lx6 LINE L1 7203 7376 -84 6 696 220 286 0 0 chr3 14549003 14549059 -145050724 + (TATATG)n Simple_repeat Simple_repeat 2 57 0 7 696 431 277 99 20 chr3 14549335 14549486 -145050297 + RSINE1 SINE B4 1 163 -2 7 696 249 309 52 0 chr3 14549839 14549936 -145049847 + L2c LINE L2 3223 3324 -63 7 696 21 0 0 0 chr3 14550111 14550132 -145049651 + AT_rich Low_complexity Low_complexity 1 21 0 7 696 210 300 0 16 chr3 14550848 14550909 -145048874 - L2 LINE L2 -1739 1680 1621 7 696 284 284 87 10 chr3 14551672 14551775 -145048008 + RSINE1 SINE B4 38 148 -17 7 696 8970 97 34 19 chr3 14552206 14554250 -145045533 - Lx3C LINE L1 -10 6966 4882 7 696 5957 192 75 9 chr3 14554801 14556002 -145043781 - Lx5 LINE L1 0 7050 5771 7 696 1023 79 0 0 chr3 14556491 14556631 -145043152 + L1_Mus2 LINE L1 6427 6566 0 7 696 1125 105 60 16 chr3 14556636 14556820 -145042963 + B2_Mm1t SINE B2 2 193 0 7 696 601 220 0 54 chr3 14557562 14557711 -145042072 + B1_Mur1 SINE Alu 2 142 -7 8 696 421 215 182 0 chr3 14559590 14559711 -145040072 - B1_Mur3 SINE Alu -6 143 1 8 696 5768 81 72 11 chr3 14560494 14562052 -145037731 - L1VL2 LINE L1 -1789 1826 172 8 696 187 217 110 55 chr3 14563505 14563578 -145036205 + MER5A DNA MER1_type 112 188 -1 8 696 282 244 105 53 chr3 14563704 14563799 -145035984 + PB1D10 SINE Alu 13 112 -5 8 696 512 314 20 80 chr3 14563809 14564010 -145035773 + B3A SINE B2 1 189 -9 8 696 1068 230 0 0 chr3 14564833 14565042 -145034741 + B3 SINE B2 1 209 -7 8 696 183 337 47 35 chr3 14565489 14565575 -145034208 + MIRc SINE MIR 141 227 -41 8 696 1040 222 29 19 chr3 14568036 14568243 -145031540 - B3 SINE B2 -7 209 1 8 696 667 259 62 7 chr3 14568393 14568537 -145031246 + RSINE1 SINE B4 8 159 -6 8 696 215 255 0 18 chr3 14568559 14568615 -145031168 + GA-rich Low_complexity Low_complexity 3 57 0 9 696 1523 297 70 21 chr3 14568654 14569499 -145030284 + L1MA4 LINE L1 4413 5298 -845 9 696 330 26 0 0 chr3 14569571 14569610 -145030173 + (TA)n Simple_repeat Simple_repeat 1 39 0 9 696 212 208 0 59 chr3 14569611 14569662 -145030121 + A-rich Low_complexity Low_complexity 3 50 0 9 696 376 227 180 9 chr3 14569774 14570036 -145029747 + L1MA4 LINE L1 5550 5938 -362 9 696 2080 69 7 30 chr3 14570600 14570882 -145028901 + L1_Mus3 LINE L1 6345 6625 -13 9 696 411 21 0 0 chr3 14570882 14570930 -145028853 + (GA)n Simple_repeat Simple_repeat 2 49 0 9 696 2080 69 7 30 chr3 14570930 14570944 -145028839 + L1_Mus3 LINE L1 6626 6634 -4 9 696 319 312 0 0 chr3 14571166 14571230 -145028553 + ID4 SINE ID 6 69 -14 9 696 250 87 43 0 chr3 14571269 14571315 -145028468 + (AGGGGG)n Simple_repeat Simple_repeat 1 48 0 9 696 1502 11 6 0 chr3 14571315 14571491 -145028292 + (GAA)n Simple_repeat Simple_repeat 3 179 0 9 696 251 89 0 62 chr3 14571491 14571524 -145028259 + polypurine Low_complexity Low_complexity 1 33 0 9 696 627 81 0 0 chr3 14571524 14571610 -145028173 + (GAAA)n Simple_repeat Simple_repeat 4 89 0 1 696 251 89 0 62 chr3 14571610 14571624 -145028159 + polypurine Low_complexity Low_complexity 34 45 0 1 696 337 304 86 23 chr3 14573123 14573298 -145026485 + MLT1A LTR MaLR 189 374 0 1 696 15190 179 39 108 chr3 14573405 14575104 -145024679 + Lx5 LINE L1 2051 3749 -3301 1 696 948 127 44 0 chr3 14575104 14575262 -145024521 + B2_Mm2 SINE B2 31 195 0 1 696 15190 179 39 108 chr3 14575262 14575281 -145024502 + Lx5 LINE L1 3750 3768 -3282 1 696 435 207 101 39 chr3 14575281 14575408 -145024375 + B1_Mur4 SINE Alu 3 148 -2 1 696 15190 179 39 108 chr3 14575408 14577685 -145022098 + Lx5 LINE L1 3769 6048 -1002 1 696 508 181 27 27 chr3 14577997 14578145 -145021638 - Lx2B LINE L1 0 7000 6853 1 696 426 261 125 78 chr3 14581519 14581755 -145018028 + L1MB3 LINE L1 5657 5904 -279 1 696 870 196 87 5 chr3 14581755 14581940 -145017843 - B3 SINE B2 -16 200 1 1 696 426 261 125 78 chr3 14581940 14582023 -145017760 + L1MB3 LINE L1 5905 5991 -192 1 696 524 272 102 75 chr3 14582050 14582304 -145017479 + MLT1B LTR MaLR 2 262 -128 1 696 351 0 0 0 chr3 14582906 14582945 -145016838 + (TG)n Simple_repeat Simple_repeat 1 39 0 1 696 453 97 0 0 chr3 14582945 14583017 -145016766 + (GA)n Simple_repeat Simple_repeat 2 73 0 1 696 677 260 44 35 chr3 14583126 14583329 -145016454 - B3 SINE B2 -11 205 1 1 696 207 0 0 0 chr3 14583603 14583626 -145016157 + (T)n Simple_repeat Simple_repeat 1 23 0 1 696 1212 41 0 14 chr3 14583632 14583780 -145016003 - B1_Mm SINE Alu 0 147 2 1 696 188 219 146 0 chr3 14583828 14583869 -145015914 + MIRb SINE MIR 139 185 -83 1 696 23 33 0 0 chr3 14584241 14584271 -145015512 + AT_rich Low_complexity Low_complexity 1 30 0 1 696 305 307 156 28 chr3 14584432 14584480 -145015303 - RSINE1 SINE B4 -4 161 3 1 696 511 209 0 21 chr3 14584480 14584573 -145015210 - B3 SINE B2 -124 92 2 1 696 213 151 0 0 chr3 14584775 14584828 -145014955 + T-rich Low_complexity Low_complexity 1 53 0 1 696 840 251 68 107 chr3 14585286 14585566 -145014217 + ORR1D2 LTR MaLR 1 288 -82 1 696 231 36 0 0 chr3 14585566 14585594 -145014189 + (TC)n Simple_repeat Simple_repeat 2 29 0 1 696 840 251 68 107 chr3 14585594 14585630 -145014153 + ORR1D2 LTR MaLR 289 297 -73 1 696 1011 67 82 0 chr3 14585630 14585765 -145014018 - B1_Mm SINE Alu 0 147 2 1 696 840 251 68 107 chr3 14585765 14585830 -145013953 + ORR1D2 LTR MaLR 298 368 -2 1 696 350 368 56 37 chr3 14586061 14586329 -145013454 + L2 LINE L2 1678 1950 -1469 1 696 490 185 325 37 chr3 14587786 14587949 -145011834 - B3 SINE B2 -6 210 1 1 696 24220 98 25 18 chr3 14588530 14593327 -145006456 - Lx3A LINE L1 -2 6979 2149 1 696 31656 57 51 2 chr3 14593322 14598454 -145001329 - L1Md_T LINE L1 0 6582 1176 1 696 3016 138 36 41 chr3 14598944 14599615 -145000168 - L1Md_T LINE L1 -5798 1186 71 1 696 650 144 110 29 chr3 14599982 14600118 -144999665 - B1_Mur4 SINE Alu 0 150 4 1 696 292 248 188 0 chr3 14601079 14601180 -144998603 - PB1D9 SINE Alu 0 120 1 1 696 571 175 195 100 chr3 14602176 14602366 -144997417 - ID_B1 SINE B4 0 224 17 1 696 386 319 43 0 chr3 14602405 14602543 -144997240 - B1F SINE Alu -3 146 3 1 696 240 246 15 15 chr3 14604085 14604151 -144995632 + (CATATA)n Simple_repeat Simple_repeat 3 68 0 1 696 265 260 40 14 chr3 14607382 14607456 -144992327 + RSINE1 SINE B4 3 78 -87 1 696 602 50 0 0 chr3 14608859 14608939 -144990844 - B1_Mus2 SINE Alu 0 147 68 1 696 386 291 198 0 chr3 14608977 14609149 -144990634 - B3 SINE B2 -10 206 1 1 696 260 239 59 15 chr3 14609901 14609969 -144989814 - MIRb SINE MIR -85 183 113 1 696 281 118 0 19 chr3 14610575 14610627 -144989156 + (CATA)n Simple_repeat Simple_repeat 2 52 0 1 696 24 0 0 0 chr3 14611835 14611859 -144987924 + AT_rich Low_complexity Low_complexity 1 24 0 1 696 359 273 50 10 chr3 14612975 14613075 -144986708 - B1F1 SINE Alu -45 104 1 1 696 1003 264 146 15 chr3 14613134 14613469 -144986314 - MTE2b LTR MaLR 0 379 1 1 696 1914 103 84 65 chr3 14613731 14614054 -144985729 - ORR1A4 LTR MaLR 0 329 1 1 696 1715 210 35 3 chr3 14614228 14614842 -144984941 - RLTR33 LTR ERVK -1 677 3 1 696 1255 119 22 17 chr3 14615103 14615283 -144984500 - B2_Mm2 SINE B2 -14 181 1 1 696 360 296 112 29 chr3 14615322 14615527 -144984256 + MER58B DNA MER1_type 98 319 -22 1 696 734 306 62 27 chr3 14615980 14616316 -144983467 - L1MC4 LINE L1 -917 7125 6778 1 696 3984 131 80 41 chr3 14616916 14617569 -144982214 + RLTR33 LTR ERVK 1 678 0 1 696 390 134 0 0 chr3 14617601 14617668 -144982115 + (GGGA)n Simple_repeat Simple_repeat 4 70 0 1 696 2088 186 13 67 chr3 14618593 14619027 -144980756 + RMER10A LTR ERVL 1 415 -27 1 696 1097 181 21 237 chr3 14619027 14619550 -144980233 - RMER17C LTR ERVK 0 410 1 1 696 2088 186 13 67 chr3 14619550 14619577 -144980206 + RMER10A LTR ERVL 416 437 -5 1 696 252 217 33 0 chr3 14620329 14620389 -144979394 - MTD LTR MaLR -33 386 325 1 696 185 29 0 128 chr3 14620458 14620497 -144979286 + T-rich Low_complexity Low_complexity 1 34 0 1 696 1741 31 0 0 chr3 14620534 14620727 -144979056 - B2_Mm1a SINE B2 0 193 1 1 696 442 299 79 23 chr3 14620728 14620924 -144978859 - MTD LTR MaLR -184 223 3 1 696 468 281 32 24 chr3 14620953 14621077 -144978706 - B1_Mur1 SINE Alu -24 125 1 1 696 228 325 32 49 chr3 14621147 14621270 -144978513 - MLT1F LTR MaLR 0 548 428 1 696 519 343 71 21 chr3 14621785 14622110 -144977673 - MLT1F LTR MaLR -202 346 6 1 696 185 226 113 0 chr3 14622131 14622184 -144977599 + L2a LINE L2 3368 3426 0 1 696 663 270 39 0 chr3 14622379 14622557 -144977226 + B3A SINE B2 14 198 0 1 696 290 351 96 7 chr3 14622864 14622999 -144976784 - LTR41B LTR ERVL -208 550 404 1 696 515 250 19 51 chr3 14623279 14623312 -144976471 + ID_B1 SINE B4 74 223 0 1 696 961 57 8 0 chr3 14623312 14623434 -144976349 + B1_Mus1 SINE Alu 26 148 0 1 696 1914 133 3 143 chr3 14623521 14623899 -144975884 + ORR1A4 LTR MaLR 1 325 -4 1 696 1297 141 23 5 chr3 14623902 14624290 -144975493 + ORR1A4-int LTR MaLR 1 447 -1516 1 696 553 149 103 0 chr3 14624286 14624393 -144975390 + ORR1A4 LTR MaLR 212 329 0 1 696 3188 162 108 100 chr3 14624615 14625413 -144974370 + RLTR40 LTR ERVK 1 804 -13 1 696 360 250 121 58 chr3 14625611 14625785 -144973998 - LTR41B LTR ERVL -553 205 21 1 696 346 233 75 8 chr3 14625806 14625940 -144973843 + MER33 DNA MER1_type 160 302 -22 1 696 529 301 127 18 chr3 14626083 14626467 -144973316 + MLT2B4 LTR ERVL 1 501 -55 1 696 373 194 30 0 chr3 14627566 14627633 -144972150 - ID4 SINE ID -14 69 1 1 696 1317 59 142 0 chr3 14627773 14627942 -144971841 - B2_Mm2 SINE B2 0 195 3 1 696 2563 83 0 6 chr3 14628176 14628502 -144971281 + L1Md_F2 LINE L1 6259 6582 0 1 696 423 0 0 0 chr3 14628515 14628562 -144971221 + (CAA)n Simple_repeat Simple_repeat 2 48 0 1 696 1470 88 0 25 chr3 14629689 14629888 -144969895 - B2_Mm2 SINE B2 0 195 2 1 696 764 235 93 84 chr3 14629943 14630157 -144969626 - B3 SINE B2 0 216 1 1 696 1532 251 59 42 chr3 14630272 14630680 -144969103 + MTD LTR MaLR 3 417 -2 1 696 4465 47 4 0 chr3 14631014 14631522 -144968261 - L1Md_F2 LINE L1 0 6582 6073 1 696 554 296 88 70 chr3 14632844 14633158 -144966625 - RLTR17 LTR ERVK -308 384 32 1 696 34 24 0 0 chr3 14634293 14634334 -144965449 + AT_rich Low_complexity Low_complexity 1 41 0 1 696 1243 55 7 0 chr3 14634397 14634542 -144965241 - B1_Mus1 SINE Alu -1 147 2 1 696 23 0 0 0 chr3 14635241 14635264 -144964519 + GC_rich Low_complexity Low_complexity 1 23 0 1 696 583 294 46 0 chr3 14635702 14635717 -144964066 - RSINE1 SINE B4 -2 163 149 1 696 669 66 0 0 chr3 14635717 14635808 -144963975 + (GA)n Simple_repeat Simple_repeat 1 91 0 1 696 583 294 46 0 chr3 14635808 14635945 -144963838 - RSINE1 SINE B4 -17 148 5 1 696 384 203 0 0 chr3 14636245 14636309 -144963474 + B3A SINE B2 2 65 -133 1 696 396 0 0 0 chr3 14636309 14636353 -144963430 + (TC)n Simple_repeat Simple_repeat 1 44 0 1 696 270 0 0 0 chr3 14636353 14636382 -144963401 + (CA)n Simple_repeat Simple_repeat 1 30 0 1 696 1841 216 50 5 chr3 14636960 14637361 -144962422 + MTD LTR MaLR 1 419 0 1 696 1151 239 153 14 chr3 14637483 14637835 -144961948 - MTD LTR MaLR -13 406 6 1 696 267 95 24 0 chr3 14637798 14637840 -144961943 - MT2A LTR ERVL -490 43 1 1 696 23 0 0 0 chr3 14637979 14638002 -144961781 + AT_rich Low_complexity Low_complexity 1 23 0 1 696 949 239 41 0 chr3 14638173 14638370 -144961413 - B3 SINE B2 -10 206 2 1 696 231 36 0 0 chr3 14638390 14638418 -144961365 + (TTA)n Simple_repeat Simple_repeat 1 28 0 1 696 396 0 0 0 chr3 14638419 14638463 -144961320 + (TG)n Simple_repeat Simple_repeat 1 44 0 1 696 319 353 29 29 chr3 14638466 14638603 -144961180 - RSINE1 SINE B4 -13 152 16 1 696 192 163 0 0 chr3 14639069 14639112 -144960671 + T-rich Low_complexity Low_complexity 1 43 0 1 696 7813 53 0 20 chr3 14639114 14639321 -144960462 - L1Md_T LINE L1 0 6582 6395 1 696 1513 48 20 55 chr3 14639321 14639521 -144960262 - B2_Mm1t SINE B2 0 193 1 1 696 7813 53 0 20 chr3 14639521 14640296 -144959487 - L1Md_T LINE L1 -188 6394 5620 1 696 7688 12 0 0 chr3 14640292 14641144 -144958639 + L1Md_T LINE L1 4775 5626 -257 1 696 229 278 42 0 chr3 14642530 14642602 -144957181 - PB1D7 SINE Alu 0 120 46 1 696 524 244 103 43 chr3 14643050 14643234 -144956549 - B3 SINE B2 0 195 1 1 696 485 291 83 45 chr3 14644698 14644964 -144954819 - B4A SINE B4 -14 278 3 1 696 450 248 18 71 chr3 14645578 14645691 -144954092 - B3 SINE B2 -108 108 2 1 696 353 250 122 48 chr3 14647145 14647292 -144952491 - B4A SINE B4 -47 245 88 1 696 233 194 148 61 chr3 14647346 14647461 -144952322 - B4 SINE B4 -167 125 1 1 696 426 85 0 0 chr3 14649339 14649398 -144950385 + (TG)n Simple_repeat Simple_repeat 2 60 0 1 696 515 186 12 0 chr3 14649399 14649485 -144950298 - B3A SINE B2 -111 87 1 1 696 272 165 47 12 chr3 14649722 14649808 -144949975 + CT-rich Low_complexity Low_complexity 3 91 0 1 696 222 91 0 0 chr3 14649802 14649835 -144949948 + (T)n Simple_repeat Simple_repeat 1 33 0 2 696 462 257 8 62 chr3 14650970 14651116 -144948667 + PB1D10 SINE Alu 1 147 -2 2 696 319 310 34 45 chr3 14652136 14652312 -144947471 - L2 LINE L2 -581 2838 2665 2 696 271 98 24 0 chr3 14652411 14652452 -144947331 + ORR1D2 LTR MaLR 329 370 0 2 696 489 312 20 20 chr3 14653031 14653178 -144946605 - B1F2 SINE Alu 0 149 3 2 696 625 279 89 0 chr3 14655817 14655975 -144943808 + B3A SINE B2 9 180 -18 2 696 21 0 0 0 chr3 14656516 14656537 -144943246 + AT_rich Low_complexity Low_complexity 1 21 0 2 696 448 297 27 33 chr3 14656583 14656733 -144943050 - B1F SINE Alu 0 149 1 2 696 388 276 29 0 chr3 14657253 14657358 -144942425 - PB1D10 SINE Alu 0 117 10 2 696 3259 108 10 73 chr3 14657463 14658075 -144941708 - Lx3A LINE L1 -636 6345 5779 2 696 324 0 0 0 chr3 14658080 14658116 -144941667 + (TG)n Simple_repeat Simple_repeat 1 36 0 2 696 429 20 0 0 chr3 14658116 14658165 -144941618 + (GA)n Simple_repeat Simple_repeat 1 50 0 2 696 507 33 0 0 chr3 14658197 14658258 -144941525 + (TG)n Simple_repeat Simple_repeat 1 61 0 2 696 389 324 86 20 chr3 14658260 14658411 -144941372 - RSINE1 SINE B4 -4 161 1 2 696 198 103 0 0 chr3 14658416 14658445 -144941338 + (TTTC)n Simple_repeat Simple_repeat 4 32 0 2 696 396 178 63 36 chr3 14658445 14658556 -144941227 - RMER1A Other Other 0 1030 917 2 696 3237 256 65 28 chr3 14658571 14659715 -144940068 - RMER1A Other Other -261 769 2 2 696 188 229 0 59 chr3 14659721 14659772 -144940011 + MIRb SINE MIR 183 230 -38 2 696 318 80 0 0 chr3 14660313 14660363 -144939420 + (TG)n Simple_repeat Simple_repeat 1 50 0 2 696 2596 154 5 14 chr3 14663027 14663499 -144936284 - Lx LINE L1 -813 5841 5376 2 696 1931 199 15 79 chr3 14663499 14663980 -144935803 + Lx2B LINE L1 6547 6996 -4 2 696 23 0 0 0 chr3 14664075 14664098 -144935685 + AT_rich Low_complexity Low_complexity 1 23 0 2 696 231 170 0 0 chr3 14665563 14665610 -144934173 + (CAT)n Simple_repeat Simple_repeat 2 48 0 2 696 1035 227 24 19 chr3 14666180 14666391 -144933392 + B3 SINE B2 4 215 -1 2 696 364 291 10 2 chr3 14666779 14666889 -144932894 + B1_Mur4 SINE Alu 20 129 -21 2 696 272 174 0 67 chr3 14666949 14667054 -144932729 + GA-rich Low_complexity Low_complexity 2 99 0 2 696 271 303 55 9 chr3 14667342 14667452 -144932331 + Charlie1 DNA MER1_type 1 115 -2666 2 696 2605 107 43 19 chr3 14667494 14667913 -144931870 + Lx2A1 LINE L1 6575 7003 -5 2 696 27 62 0 0 chr3 14668022 14668070 -144931713 + AT_rich Low_complexity Low_complexity 1 48 0 2 696 581 246 0 8 chr3 14668315 14668446 -144931337 + B3 SINE B2 1 130 -86 2 696 4314 25 0 0 chr3 14668462 14668944 -144930839 + LTRIS_Mm LTR ERV1 1 482 0 2 696 36165 32 16 14 chr3 14668945 14673474 -144926309 + MuRRS-int LTR ERV1 2 4690 0 2 696 4342 23 0 0 chr3 14673474 14673956 -144925827 + LTRIS_Mm LTR ERV1 1 482 0 2 696 451 291 68 59 chr3 14675329 14675566 -144924217 + Charlie1 DNA MER1_type 1766 2004 -777 2 696 402 21 0 0 chr3 14675714 14675761 -144924022 + (TG)n Simple_repeat Simple_repeat 2 48 0 2 696 928 244 177 68 chr3 14675923 14675997 -144923786 - MT2B LTR ERVL 0 601 537 2 696 1245 193 9 0 chr3 14675997 14676220 -144923563 + URR1B DNA MER1_type 1 225 0 2 696 928 244 177 68 chr3 14676220 14676687 -144923096 - MT2B LTR ERVL -65 536 1 2 696 269 295 8 69 chr3 14677526 14677657 -144922126 - RLTR24 LTR ERV1 -402 127 5 2 696 216 343 0 0 chr3 14678577 14678647 -144921136 + CT-rich Low_complexity Low_complexity 4 73 0 2 696 303 294 9 35 chr3 14678836 14678949 -144920834 - B1F2 SINE Alu -28 121 12 2 697 252 0 0 0 chr3 14680180 14680208 -144919575 + (CCCA)n Simple_repeat Simple_repeat 2 29 0 2 697 288 137 0 0 chr3 14680446 14680497 -144919286 + (CGA)n Simple_repeat Simple_repeat 2 52 0 2 697 916 165 53 27 chr3 14680498 14680685 -144919098 - B3 SINE B2 -14 202 11 2 697 1757 129 103 43 chr3 14680841 14681189 -144918594 - Lx LINE L1 0 6654 6286 2 697 244 304 70 35 chr3 14681343 14681599 -144918184 + RMER17C LTR ERVK 84 348 -62 2 697 1353 157 182 36 chr3 14682578 14682936 -144916847 + RMER17C LTR ERVK 1 410 0 2 697 1655 190 99 27 chr3 14683536 14683948 -144915835 + RMER10A LTR ERVL 1 442 0 2 697 228 256 0 0 chr3 14684276 14684319 -144915464 + ID_B1 SINE B4 82 124 -100 2 697 230 274 16 31 chr3 14684438 14684502 -144915281 + ID_B1 SINE B4 62 124 -100 2 697 218 237 33 33 chr3 14684623 14684684 -144915099 + ID_B1 SINE B4 64 124 -100 2 697 221 250 0 86 chr3 14684691 14684761 -144915022 + PB1D10 SINE Alu 5 68 -52 2 697 493 318 0 29 chr3 14685008 14685144 -144914639 + ID_B1 SINE B4 86 217 -7 2 697 1436 78 11 0 chr3 14686354 14686545 -144913238 + B2_Mm1t SINE B2 1 193 0 2 697 276 30 0 0 chr3 14686939 14686972 -144912811 + (CA)n Simple_repeat Simple_repeat 2 34 0 2 697 648 67 0 0 chr3 14686972 14687061 -144912722 + (GA)n Simple_repeat Simple_repeat 2 91 0 2 697 213 344 0 15 chr3 14687061 14687126 -144912657 - PB1D10 SINE Alu -33 84 21 2 697 21 36 0 0 chr3 14687644 14687672 -144912111 + AT_rich Low_complexity Low_complexity 1 28 0 2 697 328 221 0 24 chr3 14687906 14688031 -144911752 + (CATA)n Simple_repeat Simple_repeat 4 125 0 2 697 3183 35 174 7 chr3 14688054 14688461 -144911322 + IAPLTR2_Mm LTR ERVK 1 475 0 2 697 195 232 0 0 chr3 14688535 14688591 -144911192 + (CATA)n Simple_repeat Simple_repeat 1 56 0 2 697 2264 146 12 29 chr3 14689461 14689877 -144909906 - RLTR9E LTR ERVK 0 409 1 2 697 787 256 79 46 chr3 14690286 14690527 -144909256 + MTEa LTR MaLR 1 249 -130 2 697 3178 180 42 44 chr3 14690532 14691217 -144908566 + RLTR25A LTR ERVK 5 688 -415 2 697 2518 152 80 6 chr3 14691222 14691701 -144908082 + Lx2B LINE L1 5533 6054 -946 2 697 516 147 167 28 chr3 14691714 14691894 -144907889 + RLTR25A LTR ERVK 690 1027 -1 2 697 373 226 21 11 chr3 14691894 14691988 -144907795 + MTEa LTR MaLR 243 337 -42 2 697 509 314 48 35 chr3 14692103 14692393 -144907390 + MLT1D LTR MaLR 203 496 -9 2 697 475 244 76 20 chr3 14692516 14692725 -144907058 - L1MB4 LINE L1 -227 5947 5731 2 697 576 92 0 10 chr3 14693294 14693393 -144906390 + L1_Mus4 LINE L1 6532 6629 -7 2 697 748 306 70 50 chr3 14693898 14694156 -144905627 - B4 SINE B4 -28 264 2 2 697 2509 136 12 9 chr3 14694286 14694709 -144905074 + RLTR20A LTR ERVK 1 424 -117 2 697 666 203 342 19 chr3 14694782 14694899 -144904884 - Lx9 LINE L1 -8 7636 7498 2 697 360 111 0 0 chr3 14694899 14694953 -144904830 + (TG)n Simple_repeat Simple_repeat 2 55 0 2 697 666 203 342 19 chr3 14694953 14694988 -144904795 - Lx9 LINE L1 -147 7497 7396 2 697 222 37 0 0 chr3 14694988 14695015 -144904768 + (TA)n Simple_repeat Simple_repeat 2 28 0 2 697 666 203 342 19 chr3 14695015 14695177 -144904606 - Lx9 LINE L1 -249 7395 7219 2 697 1058 199 5 0 chr3 14695149 14695335 -144904448 - Lx9 LINE L1 -844 6800 6614 2 697 11342 101 17 17 chr3 14695333 14697057 -144902726 - L1_Mm LINE L1 -1402 4481 2759 2 697 805 80 0 0 chr3 14697052 14697152 -144902631 + L1Md_F2 LINE L1 5486 5585 -298 2 697 7489 80 4 3 chr3 14697153 14698148 -144901635 + L1Md_F2 LINE L1 5587 6582 0 2 697 198 0 0 0 chr3 14698217 14698239 -144901544 + (A)n Simple_repeat Simple_repeat 1 22 0 2 697 4533 103 9 0 chr3 14698239 14698879 -144900904 + L1_Mus2 LINE L1 5917 6562 -4 2 697 1203 255 58 0 chr3 14698888 14699166 -144900617 - Lx9 LINE L1 -1024 6620 6327 2 697 273 282 75 22 chr3 14701604 14701738 -144898045 + B1F SINE Alu 1 141 -8 2 697 1084 131 63 0 chr3 14702042 14702217 -144897566 - B2_Mm2 SINE B2 -8 187 2 2 697 8061 35 0 0 chr3 14705014 14705950 -144893833 - L1Md_T LINE L1 0 6582 5647 2 697 2677 46 9 6 chr3 14705950 14706276 -144893507 + IAPLTR2b LTR ERVK 1 327 0 2 697 53137 40 17 24 chr3 14706277 14712874 -144886909 + IAPEz-int LTR ERVK 9 6479 -2 2 697 2771 31 9 3 chr3 14712876 14713201 -144886582 + IAPLTR2b LTR ERVK 1 327 0 2 697 26781 28 1 0 chr3 14713201 14716338 -144883445 - L1_Mm LINE L1 -231 5652 2513 2 697 2912 23 2 187 chr3 14716338 14716814 -144882969 + RLTR10 LTR ERVK 1 388 -2 2 697 8136 41 1 3 chr3 14716826 14717786 -144881997 + RLTR10-int LTR ERVK 41 998 -989 2 697 373 271 31 8 chr3 14717850 14717980 -144881803 + RLTR10-int LTR ERVK 1462 1594 -5987 2 697 8956 21 0 1 chr3 14718062 14719061 -144880722 + RLTR10-int LTR ERVK 990 1987 0 2 697 2912 23 2 187 chr3 14719061 14719537 -144880246 + RLTR10 LTR ERVK 1 388 -2 2 697 2138 50 4 0 chr3 14719549 14719809 -144879974 + RLTR10-int LTR ERVK 41 301 -1686 2 697 9793 74 0 8 chr3 14719809 14722270 -144877513 - L1Md_Gf LINE L1 -3365 2521 1 2 697 865 249 106 0 chr3 14722669 14722914 -144876869 - Lx6 LINE L1 -9 7451 7181 2 697 3147 162 25 49 chr3 14724754 14725424 -144874359 - Lx LINE L1 -2 6652 5999 2 697 5585 166 24 18 chr3 14725422 14726538 -144873245 - L1_Mur2 LINE L1 -732 5145 4023 2 697 3400 76 0 42 chr3 14726958 14727436 -144872347 - L1_Mus2 LINE L1 0 6566 6109 2 697 197 315 139 0 chr3 14727768 14727876 -144871907 + MIR SINE MIR 124 246 -16 2 697 24 32 0 0 chr3 14728089 14728120 -144871663 + AT_rich Low_complexity Low_complexity 1 31 0 2 697 223 160 0 57 chr3 14728165 14728218 -144871565 + GA-rich Low_complexity Low_complexity 5 54 0 2 697 218 342 111 7 chr3 14728445 14728598 -144871185 - L2 LINE L2 -865 2554 2386 2 697 307 390 81 0 chr3 14730412 14730535 -144869248 + RSINE1 SINE B4 3 135 -30 2 697 27 0 0 0 chr3 14730710 14730737 -144869046 + AT_rich Low_complexity Low_complexity 1 27 0 2 697 16733 126 14 6 chr3 14730927 14733753 -144866030 + L1_Mm LINE L1 2512 5360 -523 2 697 6234 92 17 0 chr3 14733783 14734687 -144865096 - L1_Mus2 LINE L1 -34 6532 5614 2 697 3153 68 2 0 chr3 14734736 14735131 -144864652 - MTA_Mm LTR MaLR 0 396 1 2 697 8513 57 8 2 chr3 14735131 14736222 -144863561 - MTA_Mm-int LTR MaLR 0 1098 1 2 697 2995 67 18 0 chr3 14736222 14736611 -144863172 - MTA_Mm LTR MaLR 0 396 1 2 697 1333 264 13 6 chr3 14736817 14737134 -144862649 - RLTR16 LTR ERVK -186 319 1 2 697 195 261 159 0 chr3 14737186 14737255 -144862528 + MIRm SINE MIR 178 257 -19 2 697 256 178 0 0 chr3 14737396 14737441 -144862342 - B1F SINE Alu -87 62 18 2 697 214 289 58 35 chr3 14737475 14737561 -144862222 + MIR SINE MIR 97 184 -78 2 697 4575 107 25 28 chr3 14737575 14738326 -144861457 - RMER17A LTR ERVK 0 751 3 2 697 250 318 12 12 chr3 14738448 14738534 -144861249 - MIR SINE MIR -66 196 111 2 697 224 59 29 0 chr3 14738629 14738663 -144861120 + (TA)n Simple_repeat Simple_repeat 1 35 0 2 697 34 0 0 0 chr3 14739641 14739675 -144860108 + AT_rich Low_complexity Low_complexity 1 34 0 3 697 37829 27 2 6 chr3 14739675 14746073 -144853710 - L1Md_T LINE L1 -1 6581 210 3 697 197 286 130 26 chr3 14746223 14746338 -144853445 + L2c LINE L2 3291 3420 -6 3 697 509 286 14 6 chr3 14746678 14746804 -144852979 + PB1D10 SINE Alu 2 127 -22 3 697 243 0 0 0 chr3 14746991 14747018 -144852765 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 3 697 313 339 18 9 chr3 14747275 14747388 -144852395 + PB1D10 SINE Alu 1 114 -3 3 697 27448 103 7 12 chr3 14748234 14750556 -144849227 - L1_Mus1 LINE L1 -57 6510 4196 3 697 4706 55 3 2 chr3 14750556 14751142 -144848641 + LTRIS_Mus LTR ERV1 1 587 0 3 697 27448 122 9 20 chr3 14751142 14753975 -144845808 - L1_Mus1 LINE L1 -1688 4195 1401 3 697 1178 62 7 0 chr3 14753975 14754119 -144845664 - B1_Mus2 SINE Alu -1 146 2 3 697 27448 196 56 35 chr3 14754119 14755232 -144844551 - L1_Mus1 LINE L1 -4483 1400 247 3 697 952 350 85 37 chr3 14755312 14755334 -144844449 - Zaphod DNA Tip100 -3395 636 621 3 697 3373 33 5 0 chr3 14755334 14755728 -144844055 + MTA_Mm LTR MaLR 1 396 0 3 697 952 350 85 37 chr3 14755728 14756305 -144843478 - Zaphod DNA Tip100 -3411 620 8 3 697 249 57 0 0 chr3 14756600 14756635 -144843148 + (T)n Simple_repeat Simple_repeat 1 35 0 3 697 297 0 0 0 chr3 14757198 14757231 -144842552 + (TG)n Simple_repeat Simple_repeat 2 34 0 3 697 316 349 112 5 chr3 14757781 14758006 -144841777 - B4A SINE B4 -12 280 15 3 697 469 266 11 0 chr3 14758127 14758221 -144841562 + URR1B DNA MER1_type 1 95 -130 3 697 26578 122 42 33 chr3 14758996 14759654 -144840129 - L1_Mus1 LINE L1 -1 6566 5895 3 697 225 345 34 22 chr3 14759654 14759743 -144840040 - MLT1G LTR MaLR -264 327 238 3 697 26578 122 42 33 chr3 14759743 14765209 -144834574 - L1_Mus1 LINE L1 -1 5894 310 3 697 714 321 74 35 chr3 14765232 14765477 -144834306 + B4A SINE B4 25 280 -12 3 697 957 113 0 0 chr3 14765477 14765654 -144834129 + (CA)n Simple_repeat Simple_repeat 1 177 0 3 697 714 321 74 35 chr3 14765654 14765666 -144834117 + B4A SINE B4 281 292 0 3 697 359 301 29 36 chr3 14765701 14765839 -144833944 - ID_B1 SINE B4 -87 137 1 3 697 180 0 0 0 chr3 14765975 14765995 -144833788 + (TTCA)n Simple_repeat Simple_repeat 3 22 0 3 697 264 336 19 28 chr3 14766925 14767032 -144832751 + MIR SINE MIR 152 257 -5 3 697 200 34 0 33 chr3 14767325 14767355 -144832428 + (TTA)n Simple_repeat Simple_repeat 2 30 0 3 697 381 301 88 54 chr3 14767964 14768224 -144831559 - L1M5 LINE L1 -1828 4318 4050 3 697 292 59 39 0 chr3 14768598 14768649 -144831134 + (TG)n Simple_repeat Simple_repeat 2 54 0 3 697 385 343 58 19 chr3 14768688 14768896 -144830887 - B4A SINE B4 -2 290 75 3 697 27 0 0 0 chr3 14769074 14769101 -144830682 + AT_rich Low_complexity Low_complexity 1 27 0 3 697 248 339 76 83 chr3 14769257 14769389 -144830394 - RSINE1 SINE B4 -16 149 19 3 697 279 0 0 0 chr3 14770438 14770469 -144829314 + (CA)n Simple_repeat Simple_repeat 2 32 0 3 697 497 246 48 32 chr3 14770932 14771058 -144828725 + ETnERV2-int LTR ERVK 7070 7197 -209 3 697 197 368 37 9 chr3 14771754 14771861 -144827922 + L2 LINE L2 2386 2495 -924 3 697 223 160 0 57 chr3 14772129 14772182 -144827601 + CT-rich Low_complexity Low_complexity 5 54 0 3 697 24 32 0 0 chr3 14772228 14772259 -144827524 + AT_rich Low_complexity Low_complexity 1 31 0 3 697 209 306 139 0 chr3 14772472 14772580 -144827203 - MIR SINE MIR -16 246 124 3 697 3354 75 2 40 chr3 14772912 14773386 -144826397 + L1_Mus2 LINE L1 6109 6564 -2 3 697 5698 172 14 2 chr3 14773809 14774916 -144824867 + L1_Mur2 LINE L1 4023 5143 -734 3 697 3332 162 28 46 chr3 14774916 14775584 -144824199 + Lx LINE L1 5999 6654 0 3 697 948 237 106 0 chr3 14777427 14777672 -144822111 + Lx6 LINE L1 7181 7451 -9 3 697 21 57 0 0 chr3 14779935 14779970 -144819813 + AT_rich Low_complexity Low_complexity 1 35 0 3 697 1092 126 63 0 chr3 14780874 14781049 -144818734 + B2_Mm2 SINE B2 2 187 -8 3 697 245 296 120 20 chr3 14782247 14782347 -144817436 + L2b LINE L2 3243 3352 -23 3 697 258 81 0 0 chr3 14782756 14782793 -144816990 + (CA)n Simple_repeat Simple_repeat 1 37 0 3 697 2062 224 40 0 chr3 14783959 14784415 -144815368 + Lx9 LINE L1 6327 6800 -844 3 697 594 223 193 5 chr3 14784387 14784553 -144815230 + Lx9 LINE L1 7219 7405 -239 3 697 546 43 0 0 chr3 14784553 14784622 -144815161 + (CA)n Simple_repeat Simple_repeat 2 70 0 3 697 594 223 193 5 chr3 14784622 14784662 -144815121 + Lx9 LINE L1 7406 7463 -181 3 697 372 43 0 0 chr3 14784666 14784712 -144815071 + (CA)n Simple_repeat Simple_repeat 1 46 0 3 697 238 32 0 0 chr3 14784721 14784752 -144815031 + Lx9 LINE L1 7434 7464 -180 3 697 363 44 0 0 chr3 14784756 14784801 -144814982 + (CA)n Simple_repeat Simple_repeat 1 45 0 3 697 270 247 94 70 chr3 14784801 14785014 -144814769 + Lx9 LINE L1 7419 7636 -8 3 697 25 0 0 0 chr3 14785017 14785042 -144814741 + AT_rich Low_complexity Low_complexity 1 25 0 3 697 357 159 0 0 chr3 14785748 14785811 -144813972 + T-rich Low_complexity Low_complexity 1 63 0 3 697 365 102 0 17 chr3 14785934 14785994 -144813789 + (TCCCC)n Simple_repeat Simple_repeat 2 60 0 3 697 1976 84 0 69 chr3 14786017 14786323 -144813460 - L1_Mus2 LINE L1 -2 6564 6280 3 697 327 85 0 0 chr3 14786401 14786448 -144813335 + (T)n Simple_repeat Simple_repeat 1 47 0 3 697 1604 76 0 9 chr3 14789062 14789289 -144810494 - L1_Mus1 LINE L1 -606 5961 5737 3 697 4411 84 7 3 chr3 14789289 14789886 -144809897 + L1_Mus1 LINE L1 5969 6567 0 3 697 930 85 0 0 chr3 14790123 14790252 -144809531 + (GGAAA)n Simple_repeat Simple_repeat 3 131 0 3 697 22 35 0 0 chr3 14790915 14790944 -144808839 + AT_rich Low_complexity Low_complexity 1 29 0 3 697 664 324 14 9 chr3 14790952 14791167 -144808616 + B3 SINE B2 1 216 0 3 697 326 248 187 19 chr3 14791192 14791299 -144808484 + RSINE1 SINE B4 3 127 -38 3 697 567 107 0 0 chr3 14791306 14791390 -144808393 + (CA)n Simple_repeat Simple_repeat 2 85 0 3 697 233 347 10 10 chr3 14792246 14792342 -144807441 + L2b LINE L2 3050 3145 -230 3 697 253 256 93 47 chr3 14792612 14792698 -144807085 + MLT1H2 LTR MaLR 73 162 -327 3 697 208 262 0 0 chr3 14793127 14793169 -144806614 - L2 LINE L2 -665 2754 2713 3 697 251 292 31 0 chr3 14793314 14793379 -144806404 - ID4_ SINE ID -13 70 4 3 697 186 118 0 0 chr3 14795525 14795559 -144804224 + (A)n Simple_repeat Simple_repeat 1 34 0 3 697 629 296 58 11 chr3 14795870 14796061 -144803722 - MLT1D LTR MaLR -23 482 283 3 697 328 284 24 87 chr3 14796104 14796231 -144803552 - MLT1D LTR MaLR -365 140 22 3 697 408 301 82 78 chr3 14797963 14798194 -144801589 - MER44B DNA MER2_type 0 550 319 3 697 806 309 12 84 chr3 14798248 14798431 -144801352 - MER44B DNA MER2_type -244 306 135 3 697 209 33 33 0 chr3 14798431 14798461 -144801322 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 3 697 806 309 12 84 chr3 14798461 14798599 -144801184 - MER44B DNA MER2_type -416 134 8 3 697 378 318 50 39 chr3 14801458 14801638 -144798145 - MER5A DNA MER1_type -7 182 1 3 697 614 293 37 25 chr3 14803922 14804083 -144795700 + RSINE1 SINE B4 3 165 0 3 697 1681 71 4 0 chr3 14804310 14804563 -144795220 + MusHAL1 LINE L1 2457 2710 -2 3 697 1131 58 0 0 chr3 14805272 14805410 -144794373 - B1_Mus1 SINE Alu -9 139 2 3 697 286 307 72 0 chr3 14805526 14805692 -144794091 + L1MB3 LINE L1 5925 6102 -81 3 697 26 0 0 0 chr3 14805753 14805779 -144794004 + AT_rich Low_complexity Low_complexity 1 26 0 3 697 529 288 157 31 chr3 14805782 14806069 -144793714 - Arthur1B DNA Tip100 -901 324 2 3 697 266 148 19 0 chr3 14806355 14806409 -144793374 + CT-rich Low_complexity Low_complexity 2 56 0 3 697 180 200 0 0 chr3 14806416 14806461 -144793322 + T-rich Low_complexity Low_complexity 1 45 0 3 697 527 272 46 20 chr3 14806564 14806759 -144793024 + B3A SINE B2 1 195 0 3 697 427 261 117 22 chr3 14807492 14807629 -144792154 + RSINE1 SINE B4 3 152 -13 3 697 361 340 28 0 chr3 14807789 14807895 -144791888 - PB1D10 SINE Alu 0 117 9 3 697 1202 284 65 30 chr3 14808228 14808631 -144791152 - MER74C LTR ERVL -16 444 28 3 697 1386 99 14 0 chr3 14809887 14810100 -144789683 - L1_Mm LINE L1 -1339 4544 4329 3 697 4653 69 3 0 chr3 14810105 14810699 -144789084 - L1Md_F2 LINE L1 -2 6583 5988 3 87 32552 67 15 6 chr3 14810701 14815416 -144784367 - L1Md_F2 LINE L1 -11 5875 1024 3 698 745 141 7 0 chr3 14815418 14815560 -144784223 + MusHAL1 LINE L1 2072 2214 -498 3 698 4489 95 16 5 chr3 14815584 14816226 -144783557 + L1_Mus3 LINE L1 5989 6637 -1 3 698 548 291 60 16 chr3 14816246 14816431 -144783352 + Lx8 LINE L1 6456 6648 -825 3 698 1556 47 0 0 chr3 14816456 14816648 -144783135 - L1_Mus2 LINE L1 0 6566 6375 3 698 1590 69 5 0 chr3 14816648 14816864 -144782919 + L1_Mus2 LINE L1 6066 6282 -284 3 698 1208 110 35 36 chr3 14816866 14817127 -144782656 - RLTR13D6 LTR ERVK -36 947 565 3 698 2307 130 8 155 chr3 14817127 14817611 -144782172 - RLTR13D6 LTR ERVK -489 413 1 3 698 663 85 0 21 chr3 14817611 14817707 -144782076 + L1_Mus2 LINE L1 6277 6370 -196 3 698 2267 286 49 5 chr3 14817706 14818479 -144781304 + Lx8 LINE L1 6639 7445 -28 3 698 541 299 86 38 chr3 14818605 14818814 -144780969 + MT2A LTR ERVL 170 388 -145 3 698 184 327 127 27 chr3 14820078 14820188 -144779595 - MIRb SINE MIR -123 145 25 3 698 1543 134 8 30 chr3 14821001 14821263 -144778520 + Lx LINE L1 6397 6652 -2 3 698 252 86 0 0 chr3 14821557 14821592 -144778191 + (A)n Simple_repeat Simple_repeat 1 35 0 3 698 196 321 12 12 chr3 14822231 14822313 -144777470 + MIRb SINE MIR 123 204 -64 3 698 395 19 19 0 chr3 14822785 14822837 -144776946 + (TG)n Simple_repeat Simple_repeat 1 53 0 3 698 249 318 114 35 chr3 14822970 14823084 -144776699 - ID_B1 SINE B4 0 224 102 3 698 825 276 70 41 chr3 14823142 14823626 -144776157 - L1MA7 LINE L1 -21 6270 5773 3 698 5092 148 27 19 chr3 14823690 14824737 -144775046 - Lx2 LINE L1 -33 6975 5809 3 698 356 223 27 0 chr3 14824740 14824852 -144774931 - L1M3 LINE L1 -815 5325 5211 3 698 246 192 0 0 chr3 14824885 14824937 -144774846 + (CCA)n Simple_repeat Simple_repeat 1 52 0 3 698 204 40 0 0 chr3 14825259 14825284 -144774499 + (TC)n Simple_repeat Simple_repeat 2 26 0 3 698 1120 89 0 0 chr3 14825309 14825455 -144774328 - B1_Mus1 SINE Alu 0 148 3 3 698 426 232 51 19 chr3 14825472 14825630 -144774153 + Lx7 LINE L1 7534 7696 0 4 698 30 77 0 0 chr3 14825682 14825747 -144774036 + AT_rich Low_complexity Low_complexity 1 65 0 4 698 292 305 18 37 chr3 14826316 14826362 -144773421 + polypurine Low_complexity Low_complexity 1 45 0 4 698 249 33 0 0 chr3 14826362 14826392 -144773391 + (TGAG)n Simple_repeat Simple_repeat 3 32 0 4 698 292 305 18 37 chr3 14826392 14826454 -144773329 + polypurine Low_complexity Low_complexity 46 107 0 4 698 239 200 36 0 chr3 14827234 14827289 -144772494 + (TATATG)n Simple_repeat Simple_repeat 4 60 0 4 698 24 32 0 0 chr3 14827372 14827403 -144772380 + AT_rich Low_complexity Low_complexity 1 31 0 4 698 1148 63 14 0 chr3 14827874 14828017 -144771766 + B1_Mus1 SINE Alu 4 148 0 4 698 252 0 0 0 chr3 14828030 14828058 -144771725 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 4 698 249 303 26 0 chr3 14828216 14828292 -144771491 + ID4 SINE ID 3 80 -3 4 698 729 315 17 0 chr3 14828319 14828497 -144771286 + B3A SINE B2 10 190 -8 4 698 290 302 42 54 chr3 14829044 14829212 -144770571 - ORR1D1 LTR MaLR -52 322 157 4 698 292 338 25 0 chr3 14829280 14829307 -144770476 - PB1D10 SINE Alu -52 97 7 4 698 326 276 0 0 chr3 14829307 14829365 -144770418 - ID_B1 SINE B4 -79 145 88 4 698 234 192 0 0 chr3 14829455 14829507 -144770276 + CT-rich Low_complexity Low_complexity 1 52 0 4 698 332 143 0 14 chr3 14830198 14830269 -144769514 + GA-rich Low_complexity Low_complexity 2 71 0 4 698 1010 130 0 6 chr3 14830287 14830465 -144769318 + (GAA)n Simple_repeat Simple_repeat 2 178 0 4 698 896 147 88 6 chr3 14831785 14831956 -144767827 - URR1B DNA MER1_type -4 221 37 4 698 27224 11 0 0 chr3 14833168 14836909 -144762874 - L1Md_A LINE L1 -2 6580 2839 4 698 390 232 74 47 chr3 14836892 14837041 -144762742 - L1_Mur3 LINE L1 -448 5432 5280 4 698 521 300 55 39 chr3 14837062 14837302 -144762481 + L1_Rod LINE L1 5463 5751 -540 4 698 231 36 0 0 chr3 14837380 14837408 -144762375 + (TG)n Simple_repeat Simple_repeat 2 29 0 4 698 300 259 64 9 chr3 14838140 14838249 -144761534 + L1MC LINE L1 5569 5683 -661 4 698 2710 137 71 7 chr3 14838266 14838701 -144761082 + RMER4A LTR ERVK 1 463 -3 4 698 184 244 0 0 chr3 14839479 14839520 -144760263 - L4 LINE RTE 0 2029 1989 4 698 23 0 0 0 chr3 14839544 14839567 -144760216 + AT_rich Low_complexity Low_complexity 1 23 0 4 698 24 0 0 0 chr3 14841819 14841843 -144757940 + AT_rich Low_complexity Low_complexity 1 24 0 4 698 247 308 30 48 chr3 14842704 14842871 -144756912 + L2a LINE L2 3202 3365 -61 4 698 201 167 24 0 chr3 14843038 14843080 -144756703 + (TTGG)n Simple_repeat Simple_repeat 1 43 0 4 698 690 194 8 12 chr3 14843359 14843526 -144756257 - L1_Mur2 LINE L1 -848 5596 5394 4 698 302 261 73 32 chr3 14843533 14843656 -144756127 - RMER4B LTR ERVK -451 134 7 4 698 269 122 54 0 chr3 14843833 14843907 -144755876 + (TA)n Simple_repeat Simple_repeat 2 79 0 4 698 841 269 254 30 chr3 14844090 14844497 -144755286 + L3 LINE CR1 3522 4020 -469 4 698 2254 176 8 3 chr3 14844497 14844862 -144754921 + ORR1B2 LTR MaLR 1 367 0 4 698 841 269 254 30 chr3 14844862 14844953 -144754830 + L3 LINE CR1 4021 4132 -357 4 698 197 268 74 0 chr3 14845321 14845395 -144754388 - MIRc SINE MIR -117 159 80 4 698 1733 328 77 27 chr3 14846215 14846726 -144753057 - L1M2 LINE L1 -5 5875 5341 4 698 1304 113 21 16 chr3 14846726 14846915 -144752868 - B2_Mm2 SINE B2 -4 191 2 4 698 1867 306 68 23 chr3 14846915 14847476 -144752307 - L1M2 LINE L1 -540 5340 4772 4 698 360 0 0 0 chr3 14847476 14847516 -144752267 + (CA)n Simple_repeat Simple_repeat 1 40 0 4 698 1867 303 67 23 chr3 14847516 14848001 -144751782 - L1M2 LINE L1 -1341 4802 4270 4 698 368 273 88 35 chr3 14848008 14848179 -144751604 - L1M2 LINE L1 -2041 4102 3923 4 698 1869 114 11 0 chr3 14848306 14848587 -144751196 + Lx2A1 LINE L1 6714 6997 -11 4 698 261 0 0 0 chr3 14848587 14848616 -144751167 + (TAAA)n Simple_repeat Simple_repeat 4 32 0 4 698 538 263 69 54 chr3 14848638 14848899 -144750884 + L1MA4 LINE L1 5592 5856 -444 4 698 256 369 69 5 chr3 14849054 14849242 -144750541 + L1MA7 LINE L1 6073 6272 -19 4 698 1938 205 8 16 chr3 14850081 14850458 -144749325 - ORR1C1 LTR MaLR -4 374 1 4 698 2224 170 44 3 chr3 14850634 14851024 -144748759 - Lx LINE L1 -6 6648 6243 4 698 1079 104 6 12 chr3 14851034 14851199 -144748584 + B2_Mm2 SINE B2 28 191 -4 4 698 1440 62 33 27 chr3 14851208 14851391 -144748392 + B2_Mm2 SINE B2 4 187 -8 4 698 749 163 32 0 chr3 14851525 14851648 -144748135 - Lx LINE L1 -432 6222 6096 4 698 947 121 6 2 chr3 14851645 14851796 -144747987 - Lx2 LINE L1 -1089 5908 5751 4 698 26 50 0 0 chr3 14851919 14851959 -144747824 + AT_rich Low_complexity Low_complexity 1 40 0 4 698 478 207 121 0 chr3 14852053 14852164 -144747619 - MTD LTR MaLR -223 198 75 4 698 5193 121 16 41 chr3 14852229 14853130 -144746653 - RLTR13A3 LTR ERVK 0 978 1 4 698 318 298 22 51 chr3 14853148 14853330 -144746453 - L1MB1 LINE L1 -319 5972 5800 4 698 603 0 0 0 chr3 14853330 14853397 -144746386 + (TC)n Simple_repeat Simple_repeat 2 68 0 4 698 250 312 20 70 chr3 14853397 14853414 -144746369 - L1MB1 LINE L1 -492 5799 5783 4 698 1327 76 16 16 chr3 14853453 14853641 -144746142 - B2_Mm2 SINE B2 -1 194 7 4 698 3272 247 76 56 chr3 14855808 14856774 -144743009 + RMER1B Other Other 69 1053 -13 4 698 4127 48 0 12 chr3 14856774 14857255 -144742528 - L1Md_F2 LINE L1 -2 6580 6106 4 698 1163 232 41 106 chr3 14859374 14859586 -144740197 + RMER17C LTR ERVK 1 183 -227 4 698 519 17 0 0 chr3 14859586 14859646 -144740137 + (TC)n Simple_repeat Simple_repeat 2 61 0 4 698 240 35 0 0 chr3 14859646 14859674 -144740109 + (TG)n Simple_repeat Simple_repeat 2 30 0 4 698 1163 232 41 106 chr3 14859674 14859874 -144739909 + RMER17C LTR ERVK 184 386 -24 4 698 217 187 42 52 chr3 14860193 14860289 -144739494 + (TATAA)n Simple_repeat Simple_repeat 5 99 0 4 698 572 43 0 89 chr3 14861289 14861390 -144738393 + (TC)n Simple_repeat Simple_repeat 2 93 0 4 698 640 235 15 22 chr3 14861393 14861528 -144738255 - B1_Mur2 SINE Alu -15 134 1 4 698 24 0 0 0 chr3 14862542 14862566 -144737217 + GC_rich Low_complexity Low_complexity 1 24 0 4 698 701 245 7 7 chr3 14865099 14865243 -144734540 + B1F SINE Alu 6 149 0 4 698 221 130 0 100 chr3 14865538 14865598 -144734185 + A-rich Low_complexity Low_complexity 3 56 0 4 698 456 316 85 9 chr3 14866312 14866523 -144733260 - MIRb SINE MIR -41 227 1 4 698 388 169 28 14 chr3 14871069 14871141 -144728642 - RSINE1 SINE B4 -82 83 11 4 698 22 0 0 0 chr3 14871862 14871884 -144727899 + AT_rich Low_complexity Low_complexity 1 22 0 4 698 262 75 18 36 chr3 14872351 14872406 -144727377 + (CAAAAA)n Simple_repeat Simple_repeat 2 55 0 4 698 27 0 0 0 chr3 14874410 14874437 -144725346 + AT_rich Low_complexity Low_complexity 1 27 0 4 698 271 279 24 36 chr3 14875432 14875599 -144724184 + (TG)n Simple_repeat Simple_repeat 1 165 0 4 698 186 43 0 0 chr3 14875689 14875712 -144724071 + (TG)n Simple_repeat Simple_repeat 1 23 0 4 698 240 35 0 0 chr3 14875767 14875796 -144723987 + (TG)n Simple_repeat Simple_repeat 1 29 0 4 698 204 40 0 0 chr3 14875818 14875843 -144723940 + (TG)n Simple_repeat Simple_repeat 1 25 0 4 698 240 35 0 0 chr3 14875972 14876001 -144723782 + (TG)n Simple_repeat Simple_repeat 1 29 0 4 698 253 265 14 42 chr3 14876067 14876138 -144723645 - B4A SINE B4 -209 83 15 4 698 21 36 0 0 chr3 14879323 14879351 -144720432 + AT_rich Low_complexity Low_complexity 1 28 0 4 698 279 220 43 32 chr3 14879787 14879881 -144719902 + GA-rich Low_complexity Low_complexity 2 96 0 4 698 519 17 0 0 chr3 14880356 14880416 -144719367 + (TG)n Simple_repeat Simple_repeat 1 60 0 4 698 261 0 0 0 chr3 14880851 14880880 -144718903 + (TG)n Simple_repeat Simple_repeat 1 29 0 4 698 837 119 0 0 chr3 14880880 14881039 -144718744 + (GA)n Simple_repeat Simple_repeat 1 160 0 4 698 438 69 0 0 chr3 14881213 14881271 -144718512 + (CA)n Simple_repeat Simple_repeat 2 59 0 4 698 340 231 0 13 chr3 14881287 14881366 -144718417 - Tigger7 DNA MER2_type -1456 1035 958 4 698 676 293 61 0 chr3 14881463 14881644 -144718139 - Tigger7 DNA MER2_type -2262 229 38 4 698 274 306 68 51 chr3 14881743 14881860 -144717923 - MER20 DNA MER1_type -95 124 6 4 698 242 286 55 45 chr3 14882408 14882518 -144717265 + MIR SINE MIR 14 124 -138 4 698 22 80 0 0 chr3 14882707 14882757 -144717026 + AT_rich Low_complexity Low_complexity 1 50 0 4 698 188 250 115 0 chr3 14883322 14883374 -144716409 + MIR3 SINE MIR 119 176 -32 4 698 220 346 54 23 chr3 14883955 14884085 -144715698 - MIR SINE MIR 0 262 129 4 698 654 146 0 0 chr3 14884132 14884242 -144715541 + (TA)n Simple_repeat Simple_repeat 2 111 0 4 698 324 227 0 0 chr3 14884825 14884913 -144714870 + (TA)n Simple_repeat Simple_repeat 1 88 0 4 698 197 33 33 0 chr3 14885932 14885962 -144713821 + (TTTTG)n Simple_repeat Simple_repeat 1 31 0 4 698 304 294 53 35 chr3 14887582 14887695 -144712088 - MIR SINE MIR -34 228 114 4 698 934 57 0 0 chr3 14889033 14889155 -144710628 + B1_Mus2 SINE Alu 26 147 0 4 698 469 160 9 9 chr3 14890536 14890643 -144709140 + GA-rich Low_complexity Low_complexity 2 108 0 4 698 237 129 47 31 chr3 14892326 14892390 -144707393 + (TTATA)n Simple_repeat Simple_repeat 4 68 0 4 698 30 27 0 0 chr3 14892441 14892478 -144707305 + AT_rich Low_complexity Low_complexity 1 37 0 4 698 3446 3 0 0 chr3 14893320 14893702 -144706081 + L1Md_A LINE L1 6201 6582 0 4 698 513 0 0 0 chr3 14894921 14894978 -144704805 + (TG)n Simple_repeat Simple_repeat 2 58 0 4 698 243 39 57 38 chr3 14895655 14895708 -144704075 + (TTTTG)n Simple_repeat Simple_repeat 2 55 0 4 698 217 396 41 20 chr3 14897489 14897636 -144702147 - L3 LINE CR1 -472 4017 3868 4 698 237 169 4 0 chr3 14899826 14899871 -144699912 - B1_Mus2 SINE Alu -98 50 5 4 698 390 100 0 0 chr3 14901826 14901886 -144697897 + (CA)n Simple_repeat Simple_repeat 1 60 0 4 698 486 148 95 9 chr3 14902788 14902904 -144696879 - Lx9 LINE L1 -1 7643 7518 4 698 266 313 58 43 chr3 14903010 14903217 -144696566 + MIR SINE MIR 4 213 -49 5 698 2386 208 45 2 chr3 14903222 14903738 -144696045 - Lx5 LINE L1 -1 7049 6512 5 698 992 170 16 16 chr3 14903730 14903921 -144695862 + Lx5 LINE L1 6285 6475 -575 5 698 289 358 0 0 chr3 14903937 14903951 -144695832 - RSINE1 SINE B4 -68 97 3 5 698 605 86 0 0 chr3 14903951 14904032 -144695751 - B2_Mm2 SINE B2 -113 82 2 5 698 289 206 89 0 chr3 14904033 14904103 -144695680 + Lx5 LINE L1 6460 6559 -499 5 698 496 43 0 55 chr3 14904130 14904203 -144695580 - Lx3_Mus LINE L1 -679 6330 6262 5 698 478 231 199 15 chr3 14904710 14904846 -144694937 - B3 SINE B2 -5 211 51 5 698 4173 108 17 19 chr3 14904847 14905486 -144694297 + Lx LINE L1 6012 6649 -5 5 698 21 0 0 0 chr3 14905508 14905529 -144694254 + AT_rich Low_complexity Low_complexity 1 21 0 5 698 238 322 120 27 chr3 14906249 14906399 -144693384 - MLT1C LTR MaLR 0 467 304 5 698 9280 73 32 31 chr3 14906540 14907357 -144692426 - Lx3_Mus LINE L1 0 7009 6175 5 698 2102 140 70 42 chr3 14907357 14907760 -144692023 + RLTR9B2 LTR ERVK 3 416 -4 5 698 9280 74 41 22 chr3 14907760 14908806 -144690977 - Lx3_Mus LINE L1 -835 6174 5127 5 698 545 285 39 124 chr3 14910281 14910693 -144689090 - MTE2a LTR MaLR -2 377 1 5 698 1104 254 85 20 chr3 14910756 14911146 -144688637 - Lx7 LINE L1 -1397 6299 5885 5 698 977 242 46 115 chr3 14911136 14911613 -144688170 + Lx7 LINE L1 7253 7696 0 5 698 225 231 0 0 chr3 14911646 14911685 -144688098 - ID SINE ID -163 61 23 5 698 266 349 52 52 chr3 14911736 14911984 -144687799 + L2 LINE L2 2376 2623 -796 5 698 301 277 9 122 chr3 14912344 14912459 -144687324 + PB1D7 SINE Alu 19 120 0 5 698 2933 54 23 13 chr3 14912626 14913022 -144686761 + MTB LTR MaLR 1 400 0 5 698 180 342 14 14 chr3 14913996 14914070 -144685713 + L2 LINE L2 1464 1537 -1882 5 698 728 289 125 9 chr3 14914516 14914851 -144684932 - Lx8 LINE L1 -998 6475 6102 5 698 528 30 0 0 chr3 14915130 14915196 -144684587 + (TCTA)n Simple_repeat Simple_repeat 3 68 0 5 698 414 0 0 0 chr3 14916457 14916503 -144683280 + (CA)n Simple_repeat Simple_repeat 2 47 0 5 698 210 342 13 0 chr3 14916898 14916974 -144682809 + L2 LINE L2 826 902 -2517 5 698 180 0 0 0 chr3 14917142 14917162 -144682621 + (CAAT)n Simple_repeat Simple_repeat 3 22 0 5 698 278 0 54 0 chr3 14918208 14918245 -144681538 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 5 698 247 313 0 43 chr3 14918259 14918329 -144681454 - ID4 SINE ID -2 81 15 5 698 447 307 47 126 chr3 14919828 14920145 -144679638 + B4 SINE B4 1 292 0 5 698 363 268 0 35 chr3 14921016 14921132 -144678651 + L1MA4 LINE L1 5744 5855 -445 5 698 237 284 15 0 chr3 14921925 14921992 -144677791 + GA-rich Low_complexity Low_complexity 5 72 0 5 698 36027 55 4 9 chr3 14922493 14928729 -144671054 - L1Md_F3 LINE L1 0 6584 382 5 698 534 263 29 7 chr3 14928962 14929100 -144670683 - B1F SINE Alu -6 143 3 5 698 3212 163 72 39 chr3 14929162 14930151 -144669632 - RLTR13D1 LTR ERVK 0 1023 1 5 698 467 355 66 30 chr3 14930210 14930648 -144669135 - Lx8 LINE L1 -121 7352 6899 5 698 219 36 0 0 chr3 14930702 14930730 -144669053 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 5 698 994 266 108 35 chr3 14930756 14931179 -144668604 - Lx8 LINE L1 -994 6702 6259 5 698 228 86 0 0 chr3 14931250 14931285 -144668498 + (CA)n Simple_repeat Simple_repeat 2 36 0 5 698 309 151 0 0 chr3 14931286 14931339 -144668444 + GA-rich Low_complexity Low_complexity 2 54 0 5 698 1193 101 50 5 chr3 14931387 14931586 -144668197 - L1_Mus3 LINE L1 -2 6636 6429 5 698 24 100 0 0 chr3 14931785 14931865 -144667918 + AT_rich Low_complexity Low_complexity 1 80 0 5 698 515 310 81 12 chr3 14932255 14932415 -144667368 + B3A SINE B2 7 177 -21 5 698 387 60 0 0 chr3 14932422 14932472 -144667311 + (CA)n Simple_repeat Simple_repeat 1 50 0 5 698 180 337 47 19 chr3 14932970 14933076 -144666707 + MIRb SINE MIR 145 253 -15 5 698 712 197 30 0 chr3 14933152 14933284 -144666499 + B1_Mur4 SINE Alu 4 139 -11 5 698 16795 156 17 13 chr3 14933322 14937380 -144662403 + L1VL4 LINE L1 577 4651 -1235 5 698 8977 128 19 20 chr3 14937380 14938898 -144660885 - MERVL-int LTR ERVL -3969 1516 1 5 698 2930 130 12 33 chr3 14938898 14939383 -144660400 - MT2C_Mm LTR ERVL 0 475 1 5 698 1971 150 11 3 chr3 14939383 14939738 -144660045 + L1_Mm LINE L1 4645 5002 -881 5 698 24 0 0 0 chr3 14940694 14940718 -144659065 + AT_rich Low_complexity Low_complexity 1 24 0 5 698 1154 242 154 25 chr3 14940719 14941075 -144658708 - Lx5 LINE L1 -9 7041 6640 5 699 270 366 72 12 chr3 14943136 14943302 -144656481 - Tigger16b DNA Tigger -14 323 148 5 699 1170 164 27 14 chr3 14944096 14944130 -144655653 + URR1A DNA MER1_type 2 34 -192 5 699 1833 84 73 4 chr3 14944130 14944404 -144655379 + L1_Mus2 LINE L1 6274 6566 0 5 699 1170 164 27 14 chr3 14944404 14944591 -144655192 + URR1A DNA MER1_type 35 226 0 5 699 707 233 200 0 chr3 14944950 14945130 -144654653 + B3 SINE B2 1 216 0 5 699 292 160 0 20 chr3 14945181 14945232 -144654551 + PB1D7 SINE Alu 68 117 -3 5 699 240 337 45 0 chr3 14945404 14945427 -144654356 - ID_B1 SINE B4 -129 95 3 5 699 302 212 45 0 chr3 14945427 14945493 -144654290 - BC1_Mm scRNA scRNA -81 71 3 5 699 2037 122 48 0 chr3 14946802 14947114 -144652669 + ORR1A2 LTR MaLR 1 327 0 5 699 231 291 124 38 chr3 14948863 14949049 -144650734 + MamRep1161 DNA TcMar 57 258 -699 5 699 1112 306 28 8 chr3 14949175 14949563 -144650220 + Lx7 LINE L1 6839 7234 -462 5 699 387 0 0 0 chr3 14949609 14949652 -144650131 + (TG)n Simple_repeat Simple_repeat 2 44 0 5 699 304 295 46 20 chr3 14949719 14949871 -144649912 + Lx7 LINE L1 7513 7668 -28 5 699 332 270 29 29 chr3 14950392 14950495 -144649288 - MTD LTR MaLR -311 108 6 5 699 249 342 76 0 chr3 14950610 14950689 -144649094 + MER2 DNA MER2_type 258 342 -3 5 699 417 223 0 0 chr3 14951237 14951340 -144648443 + RMER1B Other Other 58 160 -906 5 699 393 22 0 0 chr3 14951381 14951427 -144648356 + (GGGA)n Simple_repeat Simple_repeat 3 48 0 5 699 705 24 0 0 chr3 14951429 14951512 -144648271 + (GAA)n Simple_repeat Simple_repeat 1 83 0 5 699 306 0 0 0 chr3 14951512 14951546 -144648237 + (GA)n Simple_repeat Simple_repeat 1 34 0 5 699 310 197 40 40 chr3 14951558 14951632 -144648151 + RMER1B Other Other 557 630 -436 5 699 1877 139 122 33 chr3 14951705 14952099 -144647684 + RMER1B Other Other 634 1062 -4 5 699 188 34 0 33 chr3 14952838 14952868 -144646915 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 5 699 827 346 68 16 chr3 14953722 14954166 -144645617 + Kanga1c DNA Tc2 113 579 -150 5 699 423 0 0 0 chr3 14954169 14954216 -144645567 + (TG)n Simple_repeat Simple_repeat 1 47 0 5 699 662 148 51 37 chr3 14954313 14954447 -144645336 + B1_Mur4 SINE Alu 16 149 -1 5 699 243 308 40 107 chr3 14955023 14955172 -144644611 + MLT1A1 LTR MaLR 7 145 -263 5 699 22 0 0 0 chr3 14955542 14955564 -144644219 + AT_rich Low_complexity Low_complexity 1 22 0 5 699 194 372 59 0 chr3 14955981 14956083 -144643700 - MIRb SINE MIR -120 148 41 5 699 329 62 21 0 chr3 14956391 14956439 -144643344 + (CA)n Simple_repeat Simple_repeat 2 50 0 5 699 1698 174 122 22 chr3 14956696 14957066 -144642717 + MTB_Mm LTR MaLR 1 407 0 5 699 390 100 0 0 chr3 14957179 14957239 -144642544 + (CAAG)n Simple_repeat Simple_repeat 3 62 0 5 699 214 400 8 24 chr3 14957893 14958016 -144641767 + MIR SINE MIR 16 136 -72 5 699 322 274 30 119 chr3 14958263 14958532 -144641251 - RMER17C LTR ERVK -158 252 8 5 699 780 182 47 7 chr3 14958546 14958695 -144641088 - URR1B DNA MER1_type -27 198 44 5 699 346 296 44 66 chr3 14958556 14958737 -144641046 + CYRA11_Mm Unknown Y-chromosome 214 390 -227 5 699 569 285 127 47 chr3 14959463 14959849 -144639934 - RMER10A LTR ERVL -25 417 1 5 699 232 341 12 24 chr3 14959988 14960093 -144639690 - MIR SINE MIR -93 115 13 5 699 426 20 0 0 chr3 14960165 14960216 -144639567 + (CA)n Simple_repeat Simple_repeat 2 52 0 5 699 251 187 9 133 chr3 14960711 14960816 -144638967 - Lx5 LINE L1 -410 6640 6549 5 699 494 319 81 0 chr3 14960820 14961101 -144638682 - Lx5 LINE L1 -695 6355 6035 5 699 1407 210 18 24 chr3 14961120 14961456 -144638327 - Lx5 LINE L1 -1130 5920 5587 5 699 2400 198 51 7 chr3 14961783 14962354 -144637429 - Lx5 LINE L1 -302 5578 4983 5 699 941 272 19 5 chr3 14962369 14962583 -144637200 - B4 SINE B4 -75 217 1 5 699 5665 169 15 21 chr3 14962690 14963736 -144636047 + Lx2 LINE L1 5958 6997 0 5 699 758 215 121 15 chr3 14964640 14964838 -144634945 + MTE2b LTR MaLR 18 236 -143 5 699 378 0 0 0 chr3 14966026 14966068 -144633715 + (TG)n Simple_repeat Simple_repeat 2 43 0 5 699 28 61 0 0 chr3 14966078 14966127 -144633656 + AT_rich Low_complexity Low_complexity 1 49 0 5 699 848 181 6 0 chr3 14966992 14967163 -144632620 + CT-rich Low_complexity Low_complexity 3 174 0 5 699 440 278 133 25 chr3 14968380 14968620 -144631163 - Lx8 LINE L1 -64 7409 7144 5 699 24 53 0 0 chr3 14968923 14968961 -144630822 + AT_rich Low_complexity Low_complexity 1 38 0 5 699 263 122 0 20 chr3 14969472 14969522 -144630261 + (TATG)n Simple_repeat Simple_repeat 2 50 0 5 699 520 292 103 16 chr3 14969522 14969842 -144629941 + L1MB1 LINE L1 5817 6164 -4 5 699 1236 167 125 100 chr3 14970187 14970357 -144629426 + RMER17C LTR ERVK 1 212 -198 5 699 804 94 0 0 chr3 14970357 14970485 -144629298 + (TC)n Simple_repeat Simple_repeat 2 129 0 5 699 1236 167 125 100 chr3 14970485 14970533 -144629250 + RMER17C LTR ERVK 213 261 -149 5 699 1119 69 7 0 chr3 14970533 14970678 -144629105 + B1_Mus2 SINE Alu 2 147 0 5 699 1236 167 125 100 chr3 14970678 14970858 -144628925 + RMER17C LTR ERVK 262 409 -1 5 699 21 0 0 0 chr3 14971436 14971457 -144628326 + AT_rich Low_complexity Low_complexity 1 21 0 5 699 359 301 29 0 chr3 14972249 14972352 -144627431 + PB1D10 SINE Alu 7 112 -5 5 699 201 234 15 30 chr3 14972463 14972529 -144627254 + GA-rich Low_complexity Low_complexity 2 66 0 5 699 27 0 0 0 chr3 14972531 14972558 -144627225 + AT_rich Low_complexity Low_complexity 1 27 0 5 699 261 0 0 0 chr3 14972575 14972604 -144627179 + (CA)n Simple_repeat Simple_repeat 2 30 0 6 699 495 0 0 0 chr3 14972604 14972658 -144627125 + (GA)n Simple_repeat Simple_repeat 2 56 0 6 699 180 0 0 0 chr3 14974076 14974096 -144625687 + (TGGGGG)n Simple_repeat Simple_repeat 5 24 0 6 699 636 98 0 0 chr3 14976097 14976199 -144623584 + (TC)n Simple_repeat Simple_repeat 1 102 0 6 699 469 182 8 16 chr3 14976208 14976331 -144623452 + Lx9 LINE L1 7506 7627 -17 6 699 877 267 118 47 chr3 14976392 14976730 -144623053 + MTEb LTR MaLR 1 362 -17 6 699 405 0 0 0 chr3 14976735 14976780 -144623003 + (TG)n Simple_repeat Simple_repeat 2 46 0 6 699 374 300 73 32 chr3 14978480 14978604 -144621179 - ID_B1 SINE B4 -59 165 37 6 699 361 366 27 0 chr3 14978610 14978722 -144621061 - ID_B1 SINE B4 -107 117 3 6 699 30 0 0 0 chr3 14979777 14979807 -144619976 + AT_rich Low_complexity Low_complexity 1 30 0 6 699 236 280 0 0 chr3 14979820 14979870 -144619913 + ZP3AR Satellite Satellite 29 78 -134 6 699 534 278 22 24 chr3 14979834 14980002 -144619781 + B4A SINE B4 1 165 0 6 699 1316 227 169 42 chr3 14980024 14980497 -144619286 + MT2A LTR ERVL 1 533 0 6 699 595 289 97 40 chr3 14980509 14980736 -144619047 + ORR1D2-int LTR MaLR 964 1203 -167 6 699 225 83 0 0 chr3 14980739 14980775 -144619008 + (T)n Simple_repeat Simple_repeat 1 36 0 6 699 23739 117 3 32 chr3 14980815 14987596 -144612187 - L1Md_A LINE L1 0 6582 23 6 699 458 261 96 7 chr3 14987596 14987731 -144612052 + ORR1D2-int LTR MaLR 1224 1370 0 6 699 1538 222 62 3 chr3 14987731 14988067 -144611716 + ORR1D2 LTR MaLR 15 370 0 6 699 253 277 15 0 chr3 14988074 14988139 -144611644 + GA-rich Low_complexity Low_complexity 1 66 0 6 699 1018 38 0 0 chr3 14988911 14989043 -144610740 - L1Md_T LINE L1 0 6582 6451 6 699 2216 86 7 3 chr3 14989093 14989397 -144610386 - L1_Mus3 LINE L1 0 6638 6334 6 699 26 30 0 0 chr3 14990177 14990210 -144609573 + AT_rich Low_complexity Low_complexity 1 33 0 6 699 276 345 89 24 chr3 14991450 14991619 -144608164 - B3A SINE B2 -14 184 5 6 699 526 207 0 32 chr3 14991917 14992102 -144607681 + (CA)n Simple_repeat Simple_repeat 2 180 0 6 699 673 292 185 0 chr3 14992500 14992743 -144607040 + B4A SINE B4 5 292 0 6 699 198 171 0 0 chr3 14992750 14992791 -144606992 + (CATATA)n Simple_repeat Simple_repeat 4 44 0 6 699 378 0 0 0 chr3 14992847 14992889 -144606894 + (CAGA)n Simple_repeat Simple_repeat 1 42 0 6 699 375 83 0 0 chr3 14993582 14993642 -144606141 + (A)n Simple_repeat Simple_repeat 1 60 0 6 699 1444 196 155 36 chr3 14993847 14994233 -144605550 - RLTR41 LTR ERV1 -14 432 1 6 699 183 162 0 0 chr3 14994768 14994805 -144604978 + CT-rich Low_complexity Low_complexity 3 39 0 6 699 442 34 17 5 chr3 14994974 14995041 -144604742 + B1_Mm SINE Alu 53 147 0 6 699 1813 224 87 42 chr3 14995432 14995927 -144603856 + RLTR20B3 LTR ERVK 5 521 -56 6 699 1184 132 11 0 chr3 14996028 14996218 -144603565 + B2_Mm1t SINE B2 2 193 0 6 699 21 0 0 0 chr3 14996270 14996291 -144603492 + AT_rich Low_complexity Low_complexity 1 21 0 6 699 28 48 0 0 chr3 14996492 14996534 -144603249 + AT_rich Low_complexity Low_complexity 1 42 0 6 699 21 36 0 0 chr3 14997073 14997101 -144602682 + AT_rich Low_complexity Low_complexity 1 28 0 6 699 466 319 91 10 chr3 14997273 14997482 -144602301 - Lx8 LINE L1 -469 7004 6779 6 699 1666 284 79 35 chr3 14997662 14998406 -144601377 - Lx9 LINE L1 -20 7624 6848 6 699 2002 196 65 28 chr3 14998408 14998838 -144600945 - RLTR41 LTR ERV1 0 446 1 6 699 904 151 16 55 chr3 14999196 14999378 -144600405 - Lx3B LINE L1 0 6973 6799 6 699 341 229 0 0 chr3 14999501 14999571 -144600212 - Lx8 LINE L1 -725 6748 6679 6 699 587 215 43 119 chr3 15000726 15000911 -144598872 + RLTR41 LTR ERV1 7 177 -269 1 699 289 183 81 21 chr3 15001066 15001163 -144598620 + Lx4B LINE L1 6923 7048 -10 2 699 422 325 93 10 chr3 15002487 15002680 -144597103 + B3 SINE B2 2 210 -6 3 699 22 0 0 0 chr3 15002680 15002702 -144597081 + AT_rich Low_complexity Low_complexity 1 22 0 4 699 22 0 0 0 chr3 15004614 15004636 -144595147 + AT_rich Low_complexity Low_complexity 1 22 0 5 699 337 288 55 41 chr3 15004806 15004951 -144594832 + MLT1E1A LTR MaLR 534 680 0 6 699 1183 61 0 7 chr3 15005117 15005265 -144594518 + B1_Mus1 SINE Alu 2 148 0 7 699 233 374 10 10 chr3 15006022 15006122 -144593661 + L1MC LINE L1 5535 5634 -2248 8 699 21 57 0 0 chr3 15006122 15006157 -144593626 + AT_rich Low_complexity Low_complexity 1 35 0 9 699 237 221 0 0 chr3 15006194 15006262 -144593521 + (TG)n Simple_repeat Simple_repeat 1 68 0 1 699 559 276 0 99 chr3 15006262 15006277 -144593506 - RSINE1 SINE B4 0 165 151 1 699 636 14 0 0 chr3 15006277 15006350 -144593433 + (GA)n Simple_repeat Simple_repeat 1 73 0 1 699 559 276 0 99 chr3 15006350 15006515 -144593268 - RSINE1 SINE B4 -15 150 3 1 699 2323 119 76 88 chr3 15006798 15007286 -144592497 - RLTR45 LTR ERVK 0 482 1 1 699 183 80 0 0 chr3 15008126 15008151 -144591632 + (TG)n Simple_repeat Simple_repeat 2 26 0 1 699 552 331 107 13 chr3 15008584 15008967 -144590816 + MER110A LTR ERV1 50 468 0 1 699 931 106 23 0 chr3 15009205 15009337 -144590446 - B1_Mus1 SINE Alu -1 147 13 1 699 1159 81 11 54 chr3 15009335 15009354 -144590429 - B2_Mm2 SINE B2 -18 177 162 1 699 848 37 9 0 chr3 15009354 15009462 -144590321 + (TCTA)n Simple_repeat Simple_repeat 1 109 0 1 699 1159 81 11 54 chr3 15009462 15009626 -144590157 - B2_Mm2 SINE B2 -34 161 2 1 699 243 0 0 0 chr3 15010150 15010177 -144589606 + (T)n Simple_repeat Simple_repeat 1 27 0 1 699 195 100 0 0 chr3 15010861 15010891 -144588892 + (TAA)n Simple_repeat Simple_repeat 2 31 0 2 699 302 312 71 20 chr3 15012215 15012313 -144587470 - PB1D10 SINE Alu 0 117 15 2 699 318 243 166 53 chr3 15012693 15012958 -144586825 - Charlie1 DNA MER1_type -8 2773 2479 2 699 629 118 0 0 chr3 15013679 15013772 -144586011 - B2_Mm2 SINE B2 -102 93 1 2 699 401 18 55 0 chr3 15014128 15014183 -144585600 - L1_Mus1 LINE L1 -587 5980 5923 2 699 243 0 0 0 chr3 15014197 15014224 -144585559 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2 699 3173 50 13 0 chr3 15014237 15014633 -144585150 + L1_Mus1 LINE L1 6167 6567 0 2 699 337 297 54 50 chr3 15016060 15016301 -144583482 - RLTR15 LTR ERVK -67 292 51 2 699 423 0 0 0 chr3 15016437 15016484 -144583299 + (TG)n Simple_repeat Simple_repeat 2 48 0 2 699 227 222 0 182 chr3 15017486 15017563 -144582220 - RSINE1 SINE B4 -1 164 102 2 699 297 341 32 50 chr3 15017752 15017910 -144581873 - MIR SINE MIR -17 251 82 3 699 215 200 0 0 chr3 15018545 15018580 -144581203 + polypyrimidine Low_complexity Low_complexity 3 37 0 3 699 308 64 21 0 chr3 15018776 15018823 -144580960 + (TTCA)n Simple_repeat Simple_repeat 2 49 0 3 699 323 223 42 45 chr3 15018997 15019104 -144580679 + L1M2 LINE L1 5480 5583 -729 3 699 1872 219 88 7 chr3 15019104 15019495 -144580288 + RLTR16 LTR ERVK 1 412 -93 3 699 387 0 0 0 chr3 15019495 15019538 -144580245 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 699 1872 219 88 7 chr3 15019538 15019602 -144580181 + RLTR16 LTR ERVK 413 493 -12 3 699 318 294 101 63 chr3 15020117 15020324 -144579459 - L1M4b LINE L1 -5772 1562 1348 3 699 310 353 46 35 chr3 15020394 15020591 -144579192 - Lx8 LINE L1 -6 7467 7269 3 699 680 307 6 0 chr3 15020622 15020785 -144578998 + B3A SINE B2 18 181 -17 3 699 2237 120 3 3 chr3 15020785 15021112 -144578671 - ORR1A2 LTR MaLR 0 327 1 3 699 533 302 25 40 chr3 15021112 15021148 -144578635 + B3 SINE B2 178 213 -3 3 699 296 363 9 0 chr3 15021225 15021338 -144578445 + Cheshire DNA MER1_type 165 278 -2142 4 699 28 0 0 0 chr3 15025466 15025494 -144574289 + AT_rich Low_complexity Low_complexity 1 28 0 4 699 1310 97 11 11 chr3 15025497 15025685 -144574098 - B2_Mm1t SINE B2 -3 190 3 4 699 588 317 47 107 chr3 15025716 15026101 -144573682 + MTE2b LTR MaLR 5 366 -13 4 699 1530 49 0 15 chr3 15026514 15026720 -144573063 - L1Md_F3 LINE L1 -1 6583 6381 4 699 3025 27 3 5 chr3 15026717 15027088 -144572695 - L1Md_F3 LINE L1 0 6584 6215 4 699 35354 35 0 0 chr3 15028455 15033925 -144565858 + L1Md_T LINE L1 23 5589 -297 4 699 8910 8 0 0 chr3 15033925 15034921 -144564862 + L1Md_T LINE L1 5590 6585 0 4 699 284 134 100 43 chr3 15035615 15035685 -144564098 + RLTR25B LTR ERVK 429 502 -526 4 699 730 73 0 0 chr3 15035624 15035720 -144564063 + B1_Mus2 SINE Alu 43 138 -9 4 699 234 0 0 0 chr3 15035720 15035746 -144564037 + (CCAA)n Simple_repeat Simple_repeat 2 27 0 4 699 4156 134 86 12 chr3 15037367 15038053 -144561730 + RMER19A LTR ERVK 1 737 0 5 699 494 309 52 38 chr3 15038104 15038316 -144561467 + B3 SINE B2 2 216 0 5 699 1015 59 37 0 chr3 15038370 15038505 -144561278 + B1_Mus1 SINE Alu 1 140 -8 5 699 207 0 0 0 chr3 15038505 15038528 -144561255 + (CAA)n Simple_repeat Simple_repeat 2 24 0 5 699 435 193 0 0 chr3 15038868 15038956 -144560827 + (TA)n Simple_repeat Simple_repeat 2 89 0 5 699 776 213 266 20 chr3 15042257 15042554 -144557229 + ORR1D2 LTR MaLR 1 370 0 5 699 9744 14 0 0 chr3 15043074 15044187 -144555596 + L1Md_A LINE L1 4474 5586 -297 5 699 8418 32 1 0 chr3 15044187 15045182 -144554601 + L1Md_A LINE L1 5587 6582 0 5 699 295 69 0 49 chr3 15045186 15045247 -144554536 + (CAAAA)n Simple_repeat Simple_repeat 2 59 0 5 699 504 301 125 19 chr3 15046011 15046375 -144553408 + MER63C DNA AcHobo 6 407 -523 5 699 3736 53 20 2 chr3 15046406 15046893 -144552890 + LTRIS2 LTR ERV1 69 564 0 5 699 256 290 169 23 chr3 15046927 15047146 -144552637 + Charlie5 DNA MER1_type 2373 2623 -1 6 699 568 320 108 78 chr3 15047158 15047344 -144552439 + MER63C DNA AcHobo 446 625 -305 5 699 1120 68 7 0 chr3 15047344 15047490 -144552293 + B1_Mus2 SINE Alu 1 147 0 6 699 568 320 108 78 chr3 15047490 15047767 -144552016 + MER63C DNA AcHobo 626 923 -7 5 699 741 53 0 0 chr3 15048056 15048150 -144551633 + (TC)n Simple_repeat Simple_repeat 1 94 0 6 699 455 33 16 0 chr3 15048150 15048210 -144551573 + (CA)n Simple_repeat Simple_repeat 1 62 0 6 699 1030 115 5 11 chr3 15048767 15048951 -144550832 + L1Md_F2 LINE L1 6398 6580 -2 6 699 1223 237 140 12 chr3 15049051 15049380 -144550403 - Lx6 LINE L1 -46 7414 7044 6 699 333 0 0 0 chr3 15049493 15049530 -144550253 + (TG)n Simple_repeat Simple_repeat 2 38 0 6 699 269 109 22 0 chr3 15049602 15049648 -144550135 + (TC)n Simple_repeat Simple_repeat 1 47 0 6 699 1101 111 0 0 chr3 15049653 15049825 -144549958 + (TTTC)n Simple_repeat Simple_repeat 2 173 0 6 699 1046 242 25 22 chr3 15049844 15050118 -144549665 - Lx6 LINE L1 -708 6752 6478 6 699 371 358 97 0 chr3 15051213 15051420 -144548363 + MIR SINE MIR 33 259 -3 6 699 181 286 107 0 chr3 15052103 15052159 -144547624 + L2a LINE L2 3360 3421 -5 7 699 198 0 0 0 chr3 15053254 15053276 -144546507 + (TA)n Simple_repeat Simple_repeat 1 22 0 7 699 431 326 15 9 chr3 15053345 15053508 -144546275 + B3A SINE B2 42 209 -7 7 699 498 277 138 16 chr3 15053556 15053919 -144545864 - Arthur1 DNA Tip100 -125 3822 3416 7 699 267 257 40 0 chr3 15054156 15054230 -144545553 + ORR1E LTR MaLR 271 347 -12 7 699 228 35 0 0 chr3 15054872 15054901 -144544882 + (A)n Simple_repeat Simple_repeat 1 29 0 7 699 1943 145 61 28 chr3 15055405 15055801 -144543982 - RLTR9E LTR ERVK 0 409 1 7 699 443 70 26 66 chr3 15055803 15055879 -144543904 - MMETn-int LTR ERVK -3 7403 7331 7 699 1784 196 146 8 chr3 15055879 15056352 -144543431 - RLTR13D6 LTR ERVK -363 539 1 7 699 1533 139 8 4 chr3 15056369 15056615 -144543168 - ETnERV3-int LTR ERVK -33 5775 5529 7 699 337 109 0 59 chr3 15056626 15056694 -144543089 - RLTR45-int LTR ERVK -1172 6072 6009 7 699 1302 174 15 11 chr3 15056787 15057141 -144542642 - MMETn-int LTR ERVK -977 6429 6127 7 699 4048 247 81 119 chr3 15057110 15057898 -144541885 - MMETn-int LTR ERVK -1703 3141 2378 7 699 207 0 0 0 chr3 15057898 15057921 -144541862 + (TTTA)n Simple_repeat Simple_repeat 3 25 0 7 699 4048 247 81 119 chr3 15057921 15060398 -144539385 - MMETn-int LTR ERVK -2467 2377 2 7 699 1736 143 122 35 chr3 15060400 15060776 -144539007 - RLTR9E LTR ERVK 0 409 1 7 699 262 286 0 67 chr3 15060776 15060793 -144538990 - B1_Mur2 SINE Alu -22 127 30 8 699 358 222 0 80 chr3 15060793 15060881 -144538902 - ID_B1 SINE B4 -33 191 111 8 699 310 366 57 0 chr3 15061012 15061187 -144538596 - L1M5 LINE L1 -382 5791 5607 8 699 232 301 82 60 chr3 15061314 15061498 -144538285 - HAL1 LINE L1 -2111 396 209 8 699 1076 183 9 5 chr3 15061842 15062056 -144537727 - Lx2B LINE L1 -2 6998 6784 8 699 252 255 0 0 chr3 15062095 15062146 -144537637 + (CATA)n Simple_repeat Simple_repeat 2 52 0 8 699 448 254 63 115 chr3 15063676 15063929 -144535854 + RLTR40 LTR ERVK 58 297 -520 8 699 230 304 96 71 chr3 15065122 15065320 -144534463 - MLT2B1 LTR ERVL -306 214 12 8 699 227 361 173 17 chr3 15065446 15065677 -144534106 + RMER15 LTR ERVL 295 561 -14 8 699 410 49 16 0 chr3 15066684 15066745 -144533038 + (CCAA)n Simple_repeat Simple_repeat 2 63 0 8 699 399 266 28 90 chr3 15066972 15067150 -144532633 - MER20 DNA MER1_type -4 215 49 9 699 429 42 27 14 chr3 15067476 15067549 -144532234 + (TTTTG)n Simple_repeat Simple_repeat 2 75 0 9 699 2320 82 0 3 chr3 15067555 15067883 -144531900 + L1_Mm LINE L1 4681 5007 -876 9 699 2911 218 95 4 chr3 15068325 15069008 -144530775 - Lx5 LINE L1 0 7050 6306 9 699 1049 102 0 0 chr3 15069333 15069480 -144530303 + B1_Mus1 SINE Alu 2 148 0 9 699 369 0 0 0 chr3 15069497 15069538 -144530245 + (CCAA)n Simple_repeat Simple_repeat 2 42 0 9 699 2039 199 35 8 chr3 15070527 15070921 -144528862 + MTD LTR MaLR 1 405 -14 9 699 485 322 117 11 chr3 15071145 15071324 -144528459 - B4A SINE B4 -10 282 85 9 699 246 322 22 50 chr3 15071877 15072016 -144527767 - MIRc SINE MIR -27 235 106 9 700 441 54 0 0 chr3 15073737 15073793 -144525990 + (TG)n Simple_repeat Simple_repeat 2 57 0 9 700 1149 284 103 8 chr3 15073794 15074174 -144525609 - MLT2C2 LTR ERVL -48 416 1 1 700 372 22 0 0 chr3 15075041 15075086 -144524697 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 700 206 284 16 0 chr3 15076558 15076636 -144523147 + GA-rich Low_complexity Low_complexity 1 79 0 1 700 189 0 0 0 chr3 15076636 15076657 -144523126 + (CAGAGA)n Simple_repeat Simple_repeat 2 22 0 1 700 225 180 0 0 chr3 15076825 15076875 -144522908 + T-rich Low_complexity Low_complexity 1 50 0 1 700 494 54 0 13 chr3 15078450 15078525 -144521258 + (CA)n Simple_repeat Simple_repeat 2 75 0 1 700 266 235 44 0 chr3 15078747 15078815 -144520968 - B1_Mur1 SINE Alu 0 149 79 1 700 21 0 0 0 chr3 15079328 15079349 -144520434 + AT_rich Low_complexity Low_complexity 1 21 0 1 700 33933 34 0 0 chr3 15079480 15084692 -144515091 + L1Md_T LINE L1 281 5589 -297 1 700 8938 7 1 0 chr3 15084692 15085687 -144514096 + L1Md_T LINE L1 5590 6585 0 1 700 1187 56 7 0 chr3 15085836 15085980 -144513803 + B1_Mm SINE Alu 1 145 -2 1 700 344 41 41 0 chr3 15085980 15086029 -144513754 + (TAAA)n Simple_repeat Simple_repeat 2 52 0 1 700 7786 55 1 1 chr3 15086137 15087848 -144511935 - L1Md_F2 LINE L1 0 6582 4872 1 700 486 0 0 0 chr3 15087877 15087931 -144511852 + (CA)n Simple_repeat Simple_repeat 2 55 0 1 700 22 0 0 0 chr3 15088569 15088591 -144511192 + AT_rich Low_complexity Low_complexity 1 22 0 1 700 2140 309 79 28 chr3 15088594 15089597 -144510186 - Lx7 LINE L1 -423 7273 6220 1 700 28 0 0 0 chr3 15089701 15089729 -144510054 + AT_rich Low_complexity Low_complexity 1 28 0 1 700 288 0 0 0 chr3 15090875 15090907 -144508876 + (TG)n Simple_repeat Simple_repeat 1 32 0 1 700 441 0 0 0 chr3 15090907 15090955 -144508828 + (GA)n Simple_repeat Simple_repeat 1 49 0 1 700 1291 74 16 5 chr3 15090965 15091155 -144508628 - L1_Mus3 LINE L1 -7 6631 6440 1 700 387 0 0 0 chr3 15091619 15091662 -144508121 + (TC)n Simple_repeat Simple_repeat 1 43 0 1 700 242 146 120 40 chr3 15091695 15091795 -144507988 + Lx8 LINE L1 7337 7444 -29 1 700 23 0 0 0 chr3 15092498 15092521 -144507262 + AT_rich Low_complexity Low_complexity 1 23 0 1 700 4220 85 7 7 chr3 15092667 15093258 -144506525 + L1Md_F2 LINE L1 5989 6579 -3 1 700 652 232 14 28 chr3 15093258 15093400 -144506383 - B3 SINE B2 -1 215 76 1 700 514 329 149 53 chr3 15094300 15094717 -144505066 + MLT1E2 LTR MaLR 94 550 -74 1 700 1081 321 67 123 chr3 15094962 15095345 -144504438 - Tigger7 DNA MER2_type -1901 590 182 1 700 441 0 0 0 chr3 15095345 15095394 -144504389 + (TA)n Simple_repeat Simple_repeat 2 50 0 1 700 1081 321 67 123 chr3 15095394 15095635 -144504148 - Tigger7 DNA MER2_type -2310 181 1 1 700 479 296 12 57 chr3 15095941 15096153 -144503630 - B3A SINE B2 -4 212 11 1 700 241 359 42 57 chr3 15096343 15096535 -144503248 - MIRb SINE MIR -51 217 29 1 700 3958 161 72 28 chr3 15098751 15099739 -144500044 - RLTR25B LTR ERVK 0 1028 2 1 700 516 284 191 9 chr3 15100372 15100603 -144499180 - B4A SINE B4 -17 275 3 1 700 325 358 43 21 chr3 15101034 15101174 -144498609 + ORR1E LTR MaLR 55 197 -162 1 700 255 306 33 66 chr3 15101546 15101637 -144498146 - MER81 DNA AcHobo -24 90 3 1 700 419 161 25 0 chr3 15102481 15102562 -144497221 + URR1B DNA MER1_type 122 204 -21 1 700 187 367 22 11 chr3 15102922 15103013 -144496770 + MIR SINE MIR 116 207 -55 1 700 457 347 43 56 chr3 15103013 15103381 -144496402 - MTEa LTR MaLR -5 374 6 1 700 223 214 17 51 chr3 15103924 15103983 -144495800 + GA-rich Low_complexity Low_complexity 2 58 0 1 700 243 0 0 0 chr3 15104641 15104668 -144495115 + (ATTG)n Simple_repeat Simple_repeat 2 28 0 1 700 315 0 0 0 chr3 15104669 15104704 -144495079 + (TG)n Simple_repeat Simple_repeat 2 36 0 1 700 273 162 0 0 chr3 15105367 15105435 -144494348 + (CA)n Simple_repeat Simple_repeat 1 68 0 1 700 643 274 152 39 chr3 15105676 15105954 -144493829 - RLTR26 LTR ERVK 0 642 348 1 700 255 31 0 0 chr3 15105954 15105986 -144493797 + (CA)n Simple_repeat Simple_repeat 2 33 0 1 700 643 274 152 39 chr3 15105986 15106068 -144493715 - RLTR26 LTR ERVK -295 347 243 1 700 306 260 100 0 chr3 15106148 15106248 -144493535 - RMER13B LTR ERVK -794 114 5 1 700 354 204 272 29 chr3 15106658 15106725 -144493058 - RLTR20A LTR ERVK -4 559 471 1 700 404 19 19 0 chr3 15106725 15106778 -144493005 + (CA)n Simple_repeat Simple_repeat 2 55 0 1 700 387 183 31 3 chr3 15106778 15106847 -144492936 - RLTR20A LTR ERVK -93 470 373 1 700 3326 62 0 0 chr3 15106966 15107386 -144492397 - L1Md_F2 LINE L1 0 6582 6163 1 700 269 287 21 21 chr3 15109155 15109251 -144490532 + MER103 DNA DNA 23 118 -48 1 700 690 305 78 5 chr3 15109530 15109721 -144490062 - ID_B1 SINE B4 -2 222 18 1 700 339 330 103 33 chr3 15111191 15111404 -144488379 + MIR SINE MIR 24 251 -11 1 700 29 28 0 0 chr3 15111994 15112030 -144487753 + AT_rich Low_complexity Low_complexity 1 36 0 1 700 243 88 0 0 chr3 15113370 15113404 -144486379 + (TTTTC)n Simple_repeat Simple_repeat 1 34 0 1 700 328 301 114 61 chr3 15116471 15116602 -144483181 + MLT1A0 LTR MaLR 167 304 -61 1 700 937 66 14 7 chr3 15117087 15117225 -144482558 + (TTCTC)n Simple_repeat Simple_repeat 4 142 0 1 700 862 35 9 9 chr3 15117315 15117430 -144482353 + (TTC)n Simple_repeat Simple_repeat 3 117 0 1 700 450 0 0 0 chr3 15117430 15117480 -144482303 + (TC)n Simple_repeat Simple_repeat 2 51 0 1 700 381 22 0 0 chr3 15119192 15119238 -144480545 + (TG)n Simple_repeat Simple_repeat 2 47 0 1 700 27 0 0 0 chr3 15119361 15119388 -144480395 + AT_rich Low_complexity Low_complexity 1 27 0 1 700 22 0 0 0 chr3 15119575 15119597 -144480186 + AT_rich Low_complexity Low_complexity 1 22 0 1 700 2523 79 0 0 chr3 15119611 15119951 -144479832 - L1_Mm LINE L1 -199 5684 5345 1 700 4912 57 11 5 chr3 15119957 15120591 -144479192 + L1_Mus1 LINE L1 5930 6567 0 1 700 4642 159 83 1 chr3 15120615 15121435 -144478348 + Lx4A LINE L1 6170 7056 -2 1 700 36 40 0 0 chr3 15121436 15121486 -144478297 + AT_rich Low_complexity Low_complexity 1 50 0 1 700 247 331 150 16 chr3 15121830 15122017 -144477766 - ORR1E LTR MaLR -50 309 98 1 700 183 132 184 0 chr3 15122132 15122170 -144477613 + L3 LINE CR1 3268 3312 -1177 1 700 898 81 0 8 chr3 15122409 15122533 -144477250 + B1_Mus2 SINE Alu 25 147 0 1 700 200 125 25 0 chr3 15122535 15122575 -144477208 + (CAAAAA)n Simple_repeat Simple_repeat 2 42 0 1 700 212 120 0 20 chr3 15122972 15123023 -144476760 + (TTTTTG)n Simple_repeat Simple_repeat 2 51 0 1 700 1107 101 0 0 chr3 15123023 15123171 -144476612 - B1_Mus1 SINE Alu 0 148 1 1 700 232 373 59 0 chr3 15123515 15123633 -144476150 + MER21B LTR ERV1 104 228 -635 1 700 397 293 57 8 chr3 15123798 15123922 -144475861 + MER21B LTR ERV1 469 598 -265 1 700 663 138 43 0 chr3 15123947 15124063 -144475720 + B2_Mm2 SINE B2 70 190 -5 1 700 1116 112 34 6 chr3 15124340 15124519 -144475264 + Lx4A LINE L1 6582 6765 -293 1 700 680 134 0 16 chr3 15124519 15124640 -144475143 + Lx4A LINE L1 6940 7058 0 1 700 331 145 0 28 chr3 15124735 15124806 -144474977 + (TG)n Simple_repeat Simple_repeat 1 69 0 1 700 414 208 54 31 chr3 15124892 15125021 -144474762 - RMER1B Other Other -12 1054 923 1 700 463 158 0 38 chr3 15125021 15125061 -144474722 + polypurine Low_complexity Low_complexity 4 40 0 1 700 1076 119 11 0 chr3 15125061 15125237 -144474546 + (GAAA)n Simple_repeat Simple_repeat 1 178 0 1 700 463 158 0 38 chr3 15125237 15125301 -144474482 + polypurine Low_complexity Low_complexity 41 104 0 1 700 624 353 21 32 chr3 15126279 15126563 -144473220 - B4 SINE B4 -11 281 1 1 700 267 312 21 11 chr3 15127779 15127873 -144471910 + GA-rich Low_complexity Low_complexity 3 97 0 1 700 237 22 43 43 chr3 15127934 15127981 -144471802 + (TTTTG)n Simple_repeat Simple_repeat 2 48 0 1 700 732 270 20 5 chr3 15128440 15128637 -144471146 - Lx6 LINE L1 0 7460 7261 1 700 506 226 8 42 chr3 15128638 15128758 -144471025 + Lx6 LINE L1 7152 7267 -193 1 700 197 203 103 59 chr3 15128867 15128935 -144470848 - L3 LINE CR1 -4348 141 71 1 700 1033 182 83 53 chr3 15129189 15129396 -144470387 - ORR1D1 LTR MaLR -100 274 74 1 700 2877 94 38 36 chr3 15129396 15129870 -144469913 - IAPLTR2_Mm LTR ERVK 0 475 1 1 700 1033 182 83 53 chr3 15129870 15129928 -144469855 - ORR1D1 LTR MaLR -301 73 1 1 700 182 118 0 29 chr3 15132492 15132527 -144467256 + (GGGA)n Simple_repeat Simple_repeat 4 37 0 1 700 4446 38 12 11 chr3 15132624 15133182 -144466601 - L1Md_F3 LINE L1 0 6584 6026 1 700 3559 189 115 13 chr3 15133318 15134151 -144465632 - Lx5 LINE L1 -1 7049 6152 1 700 21 36 0 0 chr3 15134316 15134344 -144465439 + AT_rich Low_complexity Low_complexity 1 28 0 1 700 326 80 20 0 chr3 15134610 15134660 -144465123 + (TTTTC)n Simple_repeat Simple_repeat 4 54 0 1 700 27 29 0 0 chr3 15134911 15134945 -144464838 + AT_rich Low_complexity Low_complexity 1 34 0 1 700 439 301 0 0 chr3 15135038 15135161 -144464622 - Lx8 LINE L1 -164 7309 7187 1 700 26 30 0 0 chr3 15135244 15135277 -144464506 + AT_rich Low_complexity Low_complexity 1 33 0 1 700 696 191 0 0 chr3 15135277 15135455 -144464328 + (TG)n Simple_repeat Simple_repeat 2 179 0 1 700 464 327 0 26 chr3 15135476 15135643 -144464140 - RSINE1 SINE B4 0 165 4 1 700 2893 36 2 158 chr3 15135989 15136451 -144463332 - RLTR10 LTR ERVK 0 390 1 1 700 565 86 0 21 chr3 15137167 15137262 -144462521 + (GGAA)n Simple_repeat Simple_repeat 1 93 0 1 700 1171 62 0 0 chr3 15137397 15137541 -144462242 + B1_Mm SINE Alu 1 144 -3 1 700 206 32 0 31 chr3 15137541 15137573 -144462210 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1 700 601 194 0 10 chr3 15137967 15138066 -144461717 + B1_Mus2 SINE Alu 42 139 -8 1 700 462 96 0 0 chr3 15138066 15138139 -144461644 + (CCAA)n Simple_repeat Simple_repeat 2 74 0 1 700 425 305 0 8 chr3 15138238 15138357 -144461426 - Lx6 LINE L1 -262 7198 7081 1 700 1291 291 78 8 chr3 15138524 15139131 -144460652 + Lx6 LINE L1 6746 7460 0 2 700 634 102 60 6 chr3 15139223 15139391 -144460392 + (TAGA)n Simple_repeat Simple_repeat 3 179 0 2 700 32 0 0 0 chr3 15139955 15139987 -144459796 + AT_rich Low_complexity Low_complexity 1 32 0 2 700 1814 81 0 8 chr3 15140210 15140460 -144459323 - L1_Mus2 LINE L1 -1 6565 6318 2 700 228 302 43 10 chr3 15140889 15141003 -144458780 - MIR SINE MIR -36 232 117 2 700 6629 48 2 1 chr3 15141803 15142623 -144457160 + L1Md_F2 LINE L1 5761 6581 -1 2 700 261 361 44 61 chr3 15143975 15144155 -144455628 + MER58B DNA MER1_type 164 340 -1 2 700 2016 121 55 9 chr3 15145095 15145421 -144454362 + Lx3B LINE L1 6630 6970 -3 2 700 240 111 0 0 chr3 15145426 15145462 -144454321 + (TAA)n Simple_repeat Simple_repeat 2 37 0 2 700 284 339 106 38 chr3 15145881 15146013 -144453770 - MER58A DNA MER1_type -35 189 49 2 700 22 0 0 0 chr3 15146327 15146349 -144453434 + AT_rich Low_complexity Low_complexity 1 22 0 2 700 238 294 142 35 chr3 15146379 15146520 -144453263 - MLT1A1 LTR MaLR -252 156 1 2 700 2837 62 3 3 chr3 15146525 15146912 -144452871 - Lx3_Mus LINE L1 -320 5566 5180 2 700 2571 72 2 0 chr3 15146901 15147299 -144452484 + Lx3_Mus LINE L1 5534 5929 -1080 2 700 495 148 0 0 chr3 15147299 15147387 -144452396 + (GAAA)n Simple_repeat Simple_repeat 4 91 0 2 700 238 169 0 0 chr3 15147389 15147448 -144452335 + Lx3_Mus LINE L1 5910 5968 -1041 2 700 567 0 0 0 chr3 15148046 15148109 -144451674 + (TC)n Simple_repeat Simple_repeat 2 64 0 2 700 570 321 25 0 chr3 15148109 15148268 -144451515 - B3A SINE B2 -35 163 1 2 700 3091 56 23 0 chr3 15149350 15149865 -144449918 + L1_Mus1 LINE L1 6158 6567 0 2 700 315 0 0 0 chr3 15150143 15150178 -144449605 + (CA)n Simple_repeat Simple_repeat 2 36 0 2 700 1579 37 0 115 chr3 15150297 15150540 -144449243 - L1Md_F3 LINE L1 -14 6570 6356 2 700 2018 32 0 0 chr3 15150540 15150788 -144448995 + L1Md_T LINE L1 6106 6353 -229 2 700 284 186 62 125 chr3 15150796 15150898 -144448885 - MTEa LTR MaLR 0 408 281 2 700 685 285 0 38 chr3 15151810 15151996 -144447787 + B3A SINE B2 2 180 -18 2 700 2302 163 2 19 chr3 15152223 15152654 -144447129 + Lx2 LINE L1 6061 6484 -513 2 700 1046 281 71 89 chr3 15155093 15155488 -144444295 - MTD LTR MaLR -14 405 18 2 700 308 283 32 32 chr3 15155598 15155693 -144444090 - MLT1I LTR MaLR 0 411 317 2 700 29 47 0 0 chr3 15156310 15156353 -144443430 + AT_rich Low_complexity Low_complexity 1 43 0 2 700 215 70 44 44 chr3 15156522 15156567 -144443216 + A-rich Low_complexity Low_complexity 2 46 0 2 700 21 0 0 0 chr3 15157309 15157330 -144442453 + AT_rich Low_complexity Low_complexity 1 21 0 2 700 296 309 167 5 chr3 15157353 15157545 -144442238 - Lx8 LINE L1 -5 7468 7246 2 700 356 320 246 30 chr3 15158642 15158906 -144440877 - MLT1F LTR MaLR -53 495 175 2 700 653 181 58 7 chr3 15159000 15159139 -144440644 + RMER20B LTR ERVK 1 146 -481 2 700 8057 31 0 3 chr3 15159142 15160072 -144439711 + RLTR13B3 LTR ERVK 3 929 0 2 700 1859 225 4 71 chr3 15160115 15160622 -144439161 + RMER20B LTR ERVK 151 623 -4 2 700 232 259 0 17 chr3 15161339 15161398 -144438385 + CT-rich Low_complexity Low_complexity 4 61 0 2 700 2068 4 0 4 chr3 15162030 15162325 -144437458 - L1Md_T LINE L1 0 6582 6348 2 700 372 43 0 0 chr3 15162873 15162919 -144436864 + (TG)n Simple_repeat Simple_repeat 2 47 0 2 700 198 0 0 0 chr3 15163448 15163470 -144436313 + (T)n Simple_repeat Simple_repeat 1 22 0 2 700 342 0 0 0 chr3 15163745 15163783 -144436000 + (TC)n Simple_repeat Simple_repeat 1 38 0 2 700 250 344 39 15 chr3 15164212 15164342 -144435441 + MIR SINE MIR 66 198 -64 2 700 440 170 89 75 chr3 15164487 15164633 -144435150 + RMER17C-int LTR ERVK 2608 2755 -483 2 700 1476 198 43 113 chr3 15164979 15165395 -144434388 + RMER10B LTR ERVL 1 387 -11 2 700 24 0 0 0 chr3 15165895 15165919 -144433864 + AT_rich Low_complexity Low_complexity 1 24 0 2 700 236 53 26 0 chr3 15166257 15166295 -144433488 + (TTTTTG)n Simple_repeat Simple_repeat 4 42 0 2 700 580 131 230 24 chr3 15166900 15167065 -144432718 - Lx9 LINE L1 -8 7636 7438 2 700 1342 196 74 96 chr3 15167065 15167471 -144432312 - RMER10B LTR ERVL 0 398 2 2 700 759 223 16 0 chr3 15167472 15167656 -144432127 - Lx9 LINE L1 -202 7442 7256 2 700 566 214 3 0 chr3 15169507 15169815 -144429968 + (CA)n Simple_repeat Simple_repeat 1 309 0 2 700 362 230 0 11 chr3 15169836 15170016 -144429767 + (CA)n Simple_repeat Simple_repeat 2 179 0 2 700 1662 220 72 47 chr3 15170236 15170751 -144429032 + Lx9 LINE L1 6896 7423 -221 2 700 307 222 40 10 chr3 15170751 15170851 -144428932 + Lx9 LINE L1 7540 7642 -2 2 700 544 54 0 13 chr3 15171180 15171255 -144428528 - MTA_Mm-int LTR MaLR -1024 74 1 2 700 3228 39 18 0 chr3 15171255 15171644 -144428139 - MTA_Mm LTR MaLR 0 396 1 2 700 1989 115 114 9 chr3 15171676 15172009 -144427774 - RLTR9A LTR ERVK 0 368 1 2 700 303 297 171 43 chr3 15172078 15172289 -144427494 + LTR16B LTR ERVL 223 460 -3 2 700 2029 155 15 3 chr3 15173766 15174103 -144425680 - ORR1A1 LTR MaLR 0 346 6 2 700 2383 194 33 47 chr3 15175055 15175148 -144424635 + RMER20A LTR ERVK 11 102 -414 2 700 3246 215 113 30 chr3 15175148 15175983 -144423800 - RMER13B LTR ERVK 0 908 5 2 700 2383 194 33 47 chr3 15175983 15176039 -144423744 + RMER20A LTR ERVK 103 144 -372 2 700 372 22 0 0 chr3 15176039 15176084 -144423699 + (CA)n Simple_repeat Simple_repeat 2 46 0 2 700 2383 194 33 47 chr3 15176084 15176446 -144423337 + RMER20A LTR ERVK 145 516 0 2 700 4657 60 3 0 chr3 15176503 15177089 -144422694 - L1_Mus1 LINE L1 -3 6564 5977 2 700 1489 43 16 5 chr3 15177170 15177356 -144422427 - B2_Mm2 SINE B2 -5 190 3 2 700 26 0 0 0 chr3 15177905 15177931 -144421852 + AT_rich Low_complexity Low_complexity 1 26 0 2 700 297 0 0 0 chr3 15178886 15178919 -144420864 + (CAAT)n Simple_repeat Simple_repeat 2 34 0 2 700 25 31 0 0 chr3 15180595 15180627 -144419156 + AT_rich Low_complexity Low_complexity 1 32 0 2 700 1691 100 92 0 chr3 15181966 15182227 -144417556 + L1_Mus1 LINE L1 6283 6567 0 2 700 213 271 56 28 chr3 15182541 15182613 -144417170 - MIRb SINE MIR -8 260 187 2 700 414 0 0 0 chr3 15182652 15182698 -144417085 + (TG)n Simple_repeat Simple_repeat 2 47 0 2 700 240 224 164 0 chr3 15183027 15183094 -144416689 + L2a LINE L2 3348 3425 -1 2 700 4498 180 51 34 chr3 15184366 15185212 -144414571 - RMER13A LTR ERVK 0 860 1 2 700 261 0 0 0 chr3 15185218 15185247 -144414536 + (TTTA)n Simple_repeat Simple_repeat 1 29 0 2 700 1000 136 0 0 chr3 15185247 15185394 -144414389 - B2_Mm2 SINE B2 -38 157 11 2 700 415 357 20 25 chr3 15185484 15185728 -144414055 + L2 LINE L2 2637 2879 -540 2 700 2312 217 73 16 chr3 15187260 15187804 -144411979 - RMER15 LTR ERVL 0 575 1 2 700 250 248 212 35 chr3 15189313 15189426 -144410357 + MIRb SINE MIR 69 201 -67 2 700 3242 53 0 2 chr3 15189733 15190130 -144409653 + MTA_Mm LTR MaLR 1 396 0 2 700 7591 85 38 2 chr3 15190130 15191190 -144408593 + MTA_Mm-int LTR MaLR 1 1098 0 2 700 3152 53 5 2 chr3 15191190 15191585 -144408198 + MTA_Mm LTR MaLR 1 396 0 2 700 236 246 154 28 chr3 15192188 15192435 -144407348 - L1MA6 LINE L1 -49 6251 5974 2 700 315 0 0 0 chr3 15192742 15192777 -144407006 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 2 700 648 0 0 0 chr3 15193368 15193440 -144406343 + (GA)n Simple_repeat Simple_repeat 1 72 0 2 700 225 163 0 0 chr3 15193793 15193842 -144405941 + CT-rich Low_complexity Low_complexity 2 50 0 2 700 427 257 94 27 chr3 15193889 15194114 -144405669 - L1MC3 LINE L1 -196 7799 7439 2 700 340 280 76 95 chr3 15195785 15195943 -144403840 - L2a LINE L2 -7 3419 3265 2 700 467 311 65 75 chr3 15196985 15197277 -144402506 + B4A SINE B4 2 290 -2 2 700 3381 197 89 11 chr3 15198651 15199401 -144400382 - RLTR40 LTR ERVK -8 809 1 2 700 282 29 0 0 chr3 15200036 15200071 -144399712 + (A)n Simple_repeat Simple_repeat 1 35 0 2 700 345 236 0 114 chr3 15201220 15201325 -144398458 + MT2B LTR ERVL 165 257 -344 2 700 820 154 0 30 chr3 15201233 15201367 -144398416 + B1_Mur4 SINE Alu 14 143 -7 2 700 189 154 0 0 chr3 15201369 15201408 -144398375 + (CAAA)n Simple_repeat Simple_repeat 1 39 0 2 700 346 258 24 90 chr3 15201574 15201740 -144398043 + L1M2 LINE L1 4067 4221 -1922 2 700 2073 303 73 47 chr3 15203040 15203933 -144395850 + RMER1C Other Other 2 982 -360 2 700 180 0 0 0 chr3 15203933 15203953 -144395830 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 2 700 2073 286 52 13 chr3 15203953 15204295 -144395488 + RMER1C Other Other 983 1340 -2 2 87 314 299 65 0 chr3 15204338 15204445 -144395338 - MER63B DNA AcHobo -43 393 280 2 701 22 0 0 0 chr3 15205563 15205585 -144394198 + AT_rich Low_complexity Low_complexity 1 22 0 2 701 435 19 0 0 chr3 15205679 15205731 -144394052 + (CA)n Simple_repeat Simple_repeat 2 53 0 2 701 369 0 0 0 chr3 15206453 15206494 -144393289 + (CA)n Simple_repeat Simple_repeat 2 42 0 2 701 501 17 0 0 chr3 15207111 15207169 -144392614 + (CA)n Simple_repeat Simple_repeat 2 59 0 2 701 1191 290 72 25 chr3 15207243 15207689 -144392094 + RMER5 LTR ERV1 38 504 -30 2 701 424 312 102 43 chr3 15208634 15208685 -144391098 + MER2 DNA MER2_type 2 55 -290 2 701 667 233 233 0 chr3 15208685 15208857 -144390926 + B3 SINE B2 2 213 -3 2 701 424 312 102 43 chr3 15208857 15209130 -144390653 + MER2 DNA MER2_type 56 345 0 2 701 198 191 0 0 chr3 15209728 15209770 -144390013 + (CTCA)n Simple_repeat Simple_repeat 1 42 0 2 701 21 0 0 0 chr3 15210644 15210665 -144389118 + AT_rich Low_complexity Low_complexity 1 21 0 2 701 21 0 0 0 chr3 15210824 15210845 -144388938 + GC_rich Low_complexity Low_complexity 1 21 0 2 701 22 35 0 0 chr3 15211823 15211852 -144387931 + AT_rich Low_complexity Low_complexity 1 29 0 2 701 627 14 0 0 chr3 15211877 15211949 -144387834 + (TTTTC)n Simple_repeat Simple_repeat 4 75 0 2 701 993 124 0 0 chr3 15211950 15212087 -144387696 - B1_Mus1 SINE Alu -11 137 1 2 701 273 29 0 0 chr3 15212409 15212443 -144387340 + (TG)n Simple_repeat Simple_repeat 1 34 0 2 701 414 0 0 0 chr3 15212443 15212488 -144387295 + (GA)n Simple_repeat Simple_repeat 1 46 0 2 701 237 387 9 0 chr3 15213658 15213764 -144386019 - L2a LINE L2 -52 3374 3268 3 701 283 270 89 113 chr3 15213812 15214025 -144385758 - LTR37A LTR ERV1 -41 385 178 3 701 266 309 109 52 chr3 15214064 15214233 -144385550 + MLT1D LTR MaLR 12 194 -311 3 701 639 0 0 0 chr3 15214233 15214304 -144385479 + (GA)n Simple_repeat Simple_repeat 2 72 0 3 701 266 309 109 52 chr3 15214304 15214363 -144385420 + MLT1D LTR MaLR 195 253 -252 3 701 504 327 91 74 chr3 15215733 15216083 -144383700 - ORR1E LTR MaLR 0 359 4 3 701 264 261 0 21 chr3 15217467 15217612 -144382171 + CT-rich Low_complexity Low_complexity 1 141 0 3 701 32 57 0 0 chr3 15218634 15218687 -144381096 + AT_rich Low_complexity Low_complexity 1 53 0 3 701 332 303 0 22 chr3 15218775 15218866 -144380917 - ID_B1 SINE B4 0 224 136 3 701 3285 101 24 0 chr3 15218883 15219348 -144380435 + L1_Mus1 LINE L1 6092 6567 0 3 701 906 49 138 0 chr3 15220074 15220197 -144379586 + B1_Mus1 SINE Alu 1 140 -8 3 701 291 28 0 0 chr3 15221461 15221497 -144378286 + (CA)n Simple_repeat Simple_repeat 2 37 0 3 701 283 211 153 13 chr3 15221586 15221739 -144378044 - L1MA4 LINE L1 -45 6255 6073 3 701 580 324 93 18 chr3 15224210 15224490 -144375293 - MER57D LTR ERV1 -53 358 58 3 701 542 247 224 0 chr3 15224785 15224955 -144374828 - B3 SINE B2 -7 209 2 3 701 2246 213 15 24 chr3 15225137 15225598 -144374185 + RLTR20B1 LTR ERVK 1 457 -106 3 701 7070 72 13 2 chr3 15227067 15228295 -144371488 + L1_Mus2 LINE L1 5325 6566 0 3 701 489 231 0 36 chr3 15228948 15229060 -144370723 + PB1D10 SINE Alu 3 110 -7 3 701 2316 68 19 3 chr3 15229549 15229861 -144369922 - L1_Mus3 LINE L1 -2 6636 6320 3 701 240 219 0 27 chr3 15229884 15229959 -144369824 + (CAGA)n Simple_repeat Simple_repeat 2 74 0 3 701 486 0 0 0 chr3 15229964 15230018 -144369765 + (GA)n Simple_repeat Simple_repeat 1 54 0 3 701 1838 297 76 88 chr3 15230248 15231052 -144368731 + RMER13A LTR ERVK 1 794 -66 3 701 241 78 38 38 chr3 15231238 15231291 -144368492 + (CAGAGA)n Simple_repeat Simple_repeat 1 53 0 3 701 297 229 198 9 chr3 15232082 15232188 -144367595 + MLT1H LTR MaLR 424 549 0 3 701 591 266 50 0 chr3 15232369 15232508 -144367275 + B1_Mur2 SINE Alu 1 146 -3 3 701 278 0 54 0 chr3 15232508 15232545 -144367238 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 3 701 211 225 0 0 chr3 15232918 15232958 -144366825 + (TG)n Simple_repeat Simple_repeat 1 40 0 3 701 339 164 0 0 chr3 15232958 15233019 -144366764 + (TA)n Simple_repeat Simple_repeat 2 62 0 3 701 379 306 178 64 chr3 15233042 15233530 -144366253 - MLT2B5 LTR ERVL -41 560 21 3 701 204 125 0 0 chr3 15233865 15233897 -144365886 + (CACCAT)n Simple_repeat Simple_repeat 1 32 0 3 701 1508 218 147 2 chr3 15234019 15234447 -144365336 + RMER1B Other Other 574 1063 -3 3 701 234 105 0 0 chr3 15234510 15234548 -144365235 + (TTATA)n Simple_repeat Simple_repeat 4 41 0 3 701 818 287 98 75 chr3 15236538 15237016 -144362767 - Lx8 LINE L1 -63 7410 6922 3 701 234 0 0 0 chr3 15237231 15237257 -144362526 + (TC)n Simple_repeat Simple_repeat 1 26 0 3 701 1137 28 0 0 chr3 15237257 15237397 -144362386 + (CA)n Simple_repeat Simple_repeat 1 141 0 3 701 468 336 94 25 chr3 15237526 15237761 -144362022 + MER21B LTR ERV1 426 676 -187 3 701 180 158 17 34 chr3 15239024 15239083 -144360700 + (CAAA)n Simple_repeat Simple_repeat 3 60 0 3 701 381 289 107 76 chr3 15239434 15239859 -144359924 + MLT1C LTR MaLR 11 458 -9 3 701 216 97 0 0 chr3 15240873 15240904 -144358879 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 3 701 2068 102 63 0 chr3 15242067 15242382 -144357401 + L1_Mus3 LINE L1 6303 6637 -1 3 701 516 220 10 52 chr3 15242388 15242529 -144357254 + RMER20B LTR ERVK 28 161 -355 3 701 738 271 65 22 chr3 15242631 15242861 -144356922 + RMER20B LTR ERVK 124 363 -264 3 701 270 0 0 0 chr3 15242970 15243000 -144356783 + (TAAA)n Simple_repeat Simple_repeat 3 32 0 3 701 219 36 0 0 chr3 15243306 15243334 -144356449 + (CAAAC)n Simple_repeat Simple_repeat 2 29 0 3 701 245 332 142 5 chr3 15243971 15244161 -144355622 - MIRb SINE MIR -21 247 19 3 701 1994 118 11 0 chr3 15245228 15245515 -144354268 + RLTR9B LTR ERVK 72 361 -76 3 701 863 257 58 10 chr3 15245773 15245981 -144353802 + ID_B1 SINE B4 1 218 -6 3 701 245 211 56 37 chr3 15245935 15245989 -144353794 + PB1D7 SINE Alu 66 120 0 3 701 248 176 310 23 chr3 15246706 15246793 -144352990 + RLTR20C LTR ERVK 49 160 -418 3 701 690 217 32 38 chr3 15246822 15246980 -144352803 + RLTR20C LTR ERVK 367 523 -11 3 701 396 0 0 0 chr3 15247186 15247230 -144352553 + (CA)n Simple_repeat Simple_repeat 2 45 0 3 701 39157 8 0 7 chr3 15248192 15254632 -144345151 - L1Md_A LINE L1 0 6582 232 3 701 2982 183 70 16 chr3 15254651 15255351 -144344432 + MYSERV16_I-int LTR ERVK 1 1379 -1463 3 701 858 241 99 83 chr3 15255351 15255610 -144344173 + RLTR9A LTR ERVK 1 277 -91 3 701 2550 113 9 96 chr3 15255610 15256070 -144343713 - RLTR9B2 LTR ERVK 0 420 1 3 701 858 241 99 83 chr3 15256070 15256172 -144343611 + RLTR9A LTR ERVK 278 368 0 3 701 759 213 38 100 chr3 15256172 15256412 -144343371 + MYSERV16_I-int LTR ERVK 707 931 -1395 3 701 1094 142 48 11 chr3 15256433 15256773 -144343010 + MYSERV16_I-int LTR ERVK 1102 1355 -971 3 701 935 34 8 0 chr3 15256775 15256893 -144342890 + B1_Mus1 SINE Alu 30 148 0 3 701 245 119 22 56 chr3 15256897 15256986 -144342797 + A-rich Low_complexity Low_complexity 2 87 0 3 701 3866 156 62 18 chr3 15256988 15257118 -144342665 + MYSERV16_I-int LTR ERVK 1346 1492 -834 3 701 513 47 0 0 chr3 15257118 15257182 -144342601 + (TC)n Simple_repeat Simple_repeat 1 64 0 3 701 3866 156 62 18 chr3 15257182 15257899 -144341884 + MYSERV16_I-int LTR ERVK 1493 2230 -96 3 701 1238 68 26 5 chr3 15257900 15258092 -144341691 - L1_Mus3 LINE L1 -1 6637 6442 3 701 180 97 0 0 chr3 15258176 15258207 -144341576 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 3 701 958 239 28 75 chr3 15258242 15258580 -144341203 + RLTR20C LTR ERVK 45 491 -87 3 701 342 0 0 0 chr3 15258580 15258618 -144341165 + (TG)n Simple_repeat Simple_repeat 2 39 0 3 701 441 240 163 31 chr3 15258618 15258684 -144341099 + RLTR20C LTR ERVK 492 566 -12 3 701 285 100 0 0 chr3 15258684 15258734 -144341049 + (A)n Simple_repeat Simple_repeat 1 50 0 3 701 1328 122 51 179 chr3 15258744 15258922 -144340861 + MusHAL1 LINE L1 195 374 -2338 3 701 1233 34 7 0 chr3 15258922 15259068 -144340715 + B1_Mm SINE Alu 1 147 0 3 701 1328 122 51 179 chr3 15259068 15259318 -144340465 + MusHAL1 LINE L1 375 568 -2144 3 701 6486 209 52 11 chr3 15259307 15261608 -144338175 + Lx2 LINE L1 4561 6981 -16 3 701 293 369 10 0 chr3 15263894 15263997 -144335786 + ORR1E LTR MaLR 1 104 -255 3 701 410 330 110 16 chr3 15264871 15265053 -144334730 - MTD LTR MaLR -216 203 5 3 701 225 188 105 125 chr3 15264927 15265079 -144334704 - Charlie2b DNA MER1_type -788 1994 1846 3 701 657 0 0 0 chr3 15265551 15265624 -144334159 + (TCTA)n Simple_repeat Simple_repeat 1 73 0 3 701 3520 183 28 10 chr3 15265624 15266340 -144333443 - Lx4B LINE L1 -21 7037 6309 3 701 5646 154 46 8 chr3 15266339 15267188 -144332595 - Lx4A LINE L1 -405 6653 5766 3 701 4436 60 11 2 chr3 15267188 15267743 -144332040 + LTRIS2 LTR ERV1 5 564 0 3 701 5646 148 11 14 chr3 15267743 15268336 -144331447 - Lx4A LINE L1 -1293 5765 5167 3 701 2865 44 3 3 chr3 15268679 15269024 -144330759 + IAPLTR4 LTR ERVK 1 345 0 3 701 216 0 0 0 chr3 15269310 15269334 -144330449 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 3 701 1356 91 5 0 chr3 15269371 15269557 -144330226 - B2_Mm1t SINE B2 -6 187 1 3 701 1566 143 41 8 chr3 15269966 15270233 -144329550 - ORR1A2 LTR MaLR -51 276 1 3 701 1727 159 18 32 chr3 15270236 15270574 -144329209 - BGLII_B LTR ERVK 0 441 109 3 701 9754 132 34 20 chr3 15270575 15273016 -144326767 + L1Md_F LINE L1 290 2766 -1051 3 701 7268 71 2 1 chr3 15273078 15274091 -144325692 - L1_Mus2 LINE L1 0 6566 5552 3 701 2902 155 102 66 chr3 15274091 15275037 -144324746 + RLTR13D1 LTR ERVK 1 902 0 3 701 1029 120 0 0 chr3 15275040 15275198 -144324585 - L1_Mus2 LINE L1 -329 5554 5397 3 701 592 295 57 94 chr3 15275196 15275514 -144324269 - L1_Mur3 LINE L1 -7117 595 290 3 701 243 0 0 0 chr3 15275707 15275734 -144324049 + (TTTG)n Simple_repeat Simple_repeat 1 27 0 3 701 397 241 8 89 chr3 15275844 15275967 -144323816 - PB1D9 SINE Alu -7 113 1 3 701 389 351 53 0 chr3 15275973 15276124 -144323659 - MTD LTR MaLR -213 206 48 3 701 4188 95 51 10 chr3 15276187 15276813 -144322970 - L1_Mus4 LINE L1 0 6636 5985 3 701 4136 143 54 64 chr3 15276814 15277432 -144322351 + Lx2 LINE L1 5030 5671 -212 3 701 1161 61 0 7 chr3 15277432 15277580 -144322203 - B1_Mm SINE Alu 0 147 1 3 701 4136 112 11 91 chr3 15277580 15278104 -144321679 + Lx2 LINE L1 5672 6132 -865 3 701 189 250 92 0 chr3 15278151 15278227 -144321556 + MIR SINE MIR 16 98 -110 3 701 1360 256 78 7 chr3 15280346 15280767 -144319016 - Lx2B LINE L1 -14 6986 6536 3 701 21 71 0 0 chr3 15280792 15280834 -144318949 + AT_rich Low_complexity Low_complexity 1 42 0 3 701 372 133 0 0 chr3 15280895 15280955 -144318828 + (TCC)n Simple_repeat Simple_repeat 2 61 0 3 701 828 303 30 88 chr3 15281229 15281594 -144318189 + MTE2a LTR MaLR 15 358 -21 3 701 3787 112 46 0 chr3 15281824 15282393 -144317390 + Lx LINE L1 6055 6649 -5 3 701 5626 141 3 1 chr3 15285655 15286847 -144312936 + Lx3B LINE L1 5309 6500 -473 3 701 10997 95 13 1 chr3 15286904 15288567 -144311216 + L1Md_F2 LINE L1 3902 5585 -298 3 701 8188 36 4 1 chr3 15288568 15289549 -144310234 + L1Md_F2 LINE L1 5587 6570 -12 3 701 517 320 32 43 chr3 15289692 15289878 -144309905 - MTE2b LTR MaLR -9 370 187 3 701 2699 236 32 58 chr3 15289908 15290825 -144308958 + Lx2B LINE L1 6023 7006 -52 3 701 34 24 0 0 chr3 15290825 15290866 -144308917 + AT_rich Low_complexity Low_complexity 1 41 0 3 701 802 264 177 6 chr3 15291109 15291425 -144308358 + ORR1D1 LTR MaLR 1 370 -4 3 701 323 296 80 0 chr3 15292894 15293019 -144306764 - MLT1B LTR MaLR -248 142 8 3 701 36 40 0 0 chr3 15295080 15295130 -144304653 + AT_rich Low_complexity Low_complexity 1 50 0 3 701 1966 161 3 3 chr3 15295862 15296180 -144303603 + ORR1A3 LTR MaLR 1 318 -8 3 701 990 323 68 9 chr3 15296184 15296524 -144303259 + ORR1D2 LTR MaLR 3 362 -8 4 701 477 0 0 0 chr3 15296905 15296958 -144302825 + (CATTT)n Simple_repeat Simple_repeat 1 53 0 4 701 822 289 66 106 chr3 15296997 15297480 -144302303 + RMER5 LTR ERV1 24 487 -47 4 701 430 333 7 59 chr3 15297989 15298142 -144301641 + ID_B1 SINE B4 3 147 -77 4 701 398 362 59 88 chr3 15298180 15298581 -144301202 + MTE2a LTR MaLR 3 404 -15 4 701 21 0 0 0 chr3 15299281 15299302 -144300481 + AT_rich Low_complexity Low_complexity 1 21 0 4 701 189 258 0 0 chr3 15299418 15299484 -144300299 + T-rich Low_complexity Low_complexity 1 66 0 4 701 330 297 78 13 chr3 15299573 15299821 -144299962 + L1M5 LINE L1 3237 3498 -2648 4 701 186 43 0 0 chr3 15300392 15300415 -144299368 + (TG)n Simple_repeat Simple_repeat 2 24 0 4 701 531 45 0 0 chr3 15300415 15300480 -144299303 + (TA)n Simple_repeat Simple_repeat 1 66 0 4 701 10144 121 6 1 chr3 15300694 15302535 -144297248 - L1Md_F LINE L1 -3000 2883 1035 4 701 16155 53 0 0 chr3 15302535 15304665 -144295118 + L1Md_F2 LINE L1 3456 5585 -298 4 701 8003 48 3 4 chr3 15304666 15305659 -144294124 + L1Md_F2 LINE L1 5587 6578 -4 4 701 1818 189 11 0 chr3 15305667 15306038 -144293745 - L1Md_F LINE L1 -5567 1049 675 4 701 2186 108 5 16 chr3 15306077 15306444 -144293339 + L1_Mus3 LINE L1 2105 2467 -3416 4 701 1191 55 7 0 chr3 15306447 15306593 -144293190 + B1_Mm SINE Alu 1 147 0 4 701 305 72 0 68 chr3 15306593 15306667 -144293116 + (CAAAA)n Simple_repeat Simple_repeat 1 69 0 4 701 36439 12 0 7 chr3 15306697 15312121 -144287662 + L1Md_A LINE L1 205 5586 -297 4 701 8805 15 0 1 chr3 15312121 15313118 -144286665 + L1Md_A LINE L1 5587 6582 0 4 701 17676 146 24 21 chr3 15313121 15315710 -144284073 + L1_Mus3 LINE L1 2470 5110 -773 4 701 1902 68 8 4 chr3 15315710 15315960 -144283823 + L1_Mus1 LINE L1 6314 6564 -3 4 701 17676 126 17 25 chr3 15315960 15316919 -144282864 + L1_Mus3 LINE L1 5111 6027 -611 4 701 2145 99 74 6 chr3 15316919 15317243 -144282540 + ORR1A1 LTR MaLR 1 346 0 4 701 6509 105 9 30 chr3 15317243 15317854 -144281929 + L1_Mus3 LINE L1 6028 6636 -2 4 701 228 261 81 38 chr3 15318436 15318553 -144281230 - MIR3 SINE MIR -71 197 81 4 701 188 103 0 49 chr3 15319043 15319084 -144280699 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 4 701 224 367 55 11 chr3 15319507 15319598 -144280185 + MIR3 SINE MIR 10 104 -104 4 701 8508 236 52 79 chr3 15321862 15322982 -144276801 + L1_Mur3 LINE L1 897 2048 -3829 4 701 504 0 0 0 chr3 15322982 15323038 -144276745 + (CA)n Simple_repeat Simple_repeat 2 57 0 4 701 8508 218 60 83 chr3 15323038 15323098 -144276685 + L1_Mur3 LINE L1 2049 2101 -3776 4 701 3103 66 13 0 chr3 15323098 15323493 -144276290 + MTB LTR MaLR 1 400 0 4 701 8508 218 60 83 chr3 15323493 15325973 -144273810 + L1_Mur3 LINE L1 2102 4464 -1413 4 701 4873 68 6 3 chr3 15325974 15326607 -144273176 + L1_Mus2 LINE L1 5932 6566 0 4 701 525 173 38 30 chr3 15326645 15326776 -144273007 + Lx9 LINE L1 7513 7644 0 4 701 466 154 22 0 chr3 15326786 15326877 -144272906 + L1_Mur3 LINE L1 4442 4534 -1343 4 701 220 354 113 56 chr3 15328793 15329470 -144270313 + L2a LINE L2 2579 3411 -15 4 701 239 172 52 0 chr3 15330669 15330727 -144269056 + Lx9 LINE L1 7433 7493 -151 4 701 324 48 0 0 chr3 15330732 15330774 -144269009 + (TG)n Simple_repeat Simple_repeat 2 43 0 4 701 788 306 58 18 chr3 15331244 15331587 -144268196 + MLT1B LTR MaLR 34 390 0 4 701 687 355 33 46 chr3 15332836 15333143 -144266640 + MTE2a LTR MaLR 56 358 -21 4 701 2865 117 41 9 chr3 15333187 15333651 -144266132 - Lx2 LINE L1 0 6997 6519 4 701 997 93 0 0 chr3 15333707 15333847 -144265936 - L1_Mus2 LINE L1 0 6566 6427 4 701 381 354 65 16 chr3 15334149 15334333 -144265450 + MTE2b LTR MaLR 8 200 -219 4 701 566 186 29 0 chr3 15334342 15334444 -144265339 + PB1D9 SINE Alu 1 105 -15 4 701 285 260 7 118 chr3 15334867 15335011 -144264772 + L1VL1 LINE L1 237 364 -6058 4 701 2267 42 22 31 chr3 15335011 15335329 -144264454 + IAPLTR2_Mm LTR ERVK 1 315 -160 4 87 2541 102 3 0 chr3 15335329 15335701 -144264082 - MusHAL1 LINE L1 -915 1797 1425 4 702 3164 100 24 2 chr3 15335700 15336211 -144263572 - L1_Mm LINE L1 -4128 1755 1234 4 702 5721 92 9 0 chr3 15336217 15337003 -144262780 + L1_Mus1 LINE L1 5773 6565 -2 4 702 11272 100 7 1 chr3 15337019 15339366 -144260417 + L1_Mus2 LINE L1 4203 6566 0 4 702 300 267 34 25 chr3 15339469 15339588 -144260195 + CT-rich Low_complexity Low_complexity 4 123 0 4 702 236 366 12 0 chr3 15339601 15339683 -144260100 - ID2 SINE ID 0 83 1 4 702 23 0 0 0 chr3 15340061 15340084 -144259699 + AT_rich Low_complexity Low_complexity 1 23 0 4 702 478 274 156 21 chr3 15340150 15340388 -144259395 - ORR1D1 LTR MaLR -46 313 37 4 702 551 330 94 14 chr3 15340391 15340603 -144259180 + MTE2b LTR MaLR 151 379 0 4 702 229 343 68 10 chr3 15340695 15340798 -144258985 + L1MCa LINE L1 496 604 -5904 4 702 195 168 20 40 chr3 15340858 15340957 -144258826 + (TA)n Simple_repeat Simple_repeat 2 98 0 4 702 206 153 26 53 chr3 15341006 15341082 -144258701 + A-rich Low_complexity Low_complexity 2 75 0 4 702 223 274 0 35 chr3 15341182 15341269 -144258514 + (TATG)n Simple_repeat Simple_repeat 3 86 0 4 702 1847 205 10 8 chr3 15341799 15342192 -144257591 + ORR1B1 LTR MaLR 1 394 0 4 702 586 326 77 4 chr3 15342643 15342902 -144256881 - MLT1B LTR MaLR -52 338 61 4 702 8093 47 3 3 chr3 15343275 15344849 -144254934 - L1Md_F2 LINE L1 -1 6581 5008 4 702 201 74 0 0 chr3 15345534 15345561 -144254222 + (TA)n Simple_repeat Simple_repeat 1 27 0 4 702 1267 96 72 14 chr3 15345924 15346145 -144253638 + L1_Mus4 LINE L1 6399 6632 -4 4 702 213 367 33 7 chr3 15347234 15347385 -144252398 - L2a LINE L2 0 3426 3272 4 702 284 0 28 0 chr3 15347400 15347436 -144252347 + (TA)n Simple_repeat Simple_repeat 1 37 0 4 702 3749 62 0 0 chr3 15347510 15348007 -144251776 + L1Md_F2 LINE L1 6101 6582 0 4 702 823 187 0 6 chr3 15348147 15348314 -144251469 - L1_Mur2 LINE L1 -628 5252 5087 4 702 7385 75 18 0 chr3 15348310 15349325 -144250458 - L1_Mus2 LINE L1 0 6566 5533 4 702 2948 206 14 18 chr3 15349316 15349978 -144249805 - L1_Mur2 LINE L1 -1162 4715 4057 4 702 2333 230 32 10 chr3 15349993 15350577 -144249206 + L1_Mur2 LINE L1 5255 5851 -26 4 702 936 380 22 67 chr3 15350600 15351156 -144248627 + Lx5 LINE L1 6486 7016 -34 4 702 980 283 76 19 chr3 15351208 15351456 -144248327 + L1_Rod LINE L1 1916 2174 -3673 4 702 2964 67 36 0 chr3 15351456 15351842 -144247941 - MTB LTR MaLR 0 400 1 4 702 980 283 76 19 chr3 15351842 15352025 -144247758 + L1_Rod LINE L1 2175 2372 -3475 4 702 7296 113 23 19 chr3 15352404 15354489 -144245294 + Lx4A LINE L1 504 2330 -1584 4 702 1516 259 58 64 chr3 15354585 15355338 -144244445 - L1_Rod LINE L1 -1222 4625 3889 4 702 1051 112 0 12 chr3 15355338 15355510 -144244273 + (TTTCC)n Simple_repeat Simple_repeat 2 171 0 4 702 1516 259 58 64 chr3 15355510 15355589 -144244194 - L1_Rod LINE L1 -1959 3888 3799 4 702 216 0 0 0 chr3 15355597 15355621 -144244162 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 4 702 1935 183 10 18 chr3 15355621 15356016 -144243767 + Lx4A LINE L1 6665 7056 -2 4 702 261 155 0 0 chr3 15356027 15356085 -144243698 + A-rich Low_complexity Low_complexity 1 58 0 4 702 1651 269 53 36 chr3 15356275 15356916 -144242867 - Lx7 LINE L1 -1315 6381 5730 4 702 247 208 0 40 chr3 15356929 15356979 -144242804 - URR1B DNA MER1_type 0 225 178 4 702 1317 231 106 42 chr3 15357144 15357615 -144242168 - Lx7 LINE L1 -967 4913 4413 4 702 400 340 40 54 chr3 15357615 15357839 -144241944 - RMER12 LTR ERVK 0 1322 1102 4 702 2795 132 19 2 chr3 15358049 15358512 -144241271 - RLTR22_Mur LTR ERVK -993 855 385 4 702 7708 88 5 0 chr3 15358521 15360173 -144239610 - L1_Mus1 LINE L1 0 6567 4922 4 702 902 121 0 13 chr3 15360173 15360324 -144239459 + L1Md_F2 LINE L1 6430 6578 -4 4 702 2143 146 5 69 chr3 15360310 15360714 -144239069 - L1_Mus1 LINE L1 -934 4949 4572 4 702 1657 187 7 82 chr3 15360714 15361120 -144238663 - RLTR22_Mur LTR ERVK -1453 395 35 4 702 20104 117 16 17 chr3 15361120 15364888 -144234895 + L1_Mus2 LINE L1 2531 6290 -276 4 702 230 136 23 0 chr3 15365508 15365552 -144234231 + A-rich Low_complexity Low_complexity 1 45 0 4 702 449 299 7 20 chr3 15365708 15365855 -144233928 + B1_Mur2 SINE Alu 5 149 0 4 702 237 128 0 0 chr3 15365993 15366040 -144233743 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 4 702 3716 135 10 0 chr3 15366297 15366873 -144232910 - MT2B2 LTR ERVL 0 584 3 4 702 647 130 171 6 chr3 15366874 15367044 -144232739 - MERVL-int LTR ERVL 0 5761 5564 4 702 6577 194 7 6 chr3 15367129 15368268 -144231515 - MERVL-int LTR ERVL -365 5396 4257 4 702 10014 170 22 3 chr3 15368267 15370000 -144229783 - MERVL-int LTR ERVL -1523 3962 2196 4 702 3534 225 14 3 chr3 15370580 15371522 -144228261 - MERVL-int LTR ERVL -3452 2309 1237 4 702 493 150 53 14 chr3 15371522 15371656 -144228127 - MT2B2 LTR ERVL -333 142 2 4 702 2524 176 25 73 chr3 15372369 15373495 -144226288 + L1_Mus2 LINE L1 272 1400 -2514 4 702 3195 85 20 0 chr3 15373494 15373943 -144225840 - L1_Mm LINE L1 -1332 4551 4094 4 702 8090 98 2 1 chr3 15373943 15375741 -144224042 + L1_Mus1 LINE L1 4766 6564 -3 4 702 5286 107 7 4 chr3 15375769 15376611 -144223172 + L1_Mus2 LINE L1 1397 2241 -3642 4 702 7795 114 13 5 chr3 15376606 15378461 -144221322 + L1_Mus2 LINE L1 4695 6563 -3 4 702 648 324 74 37 chr3 15378616 15378969 -144220814 + ORR1D2 LTR MaLR 3 368 -2 4 702 4689 174 15 6 chr3 15379267 15380158 -144219625 + L1_Mur2 LINE L1 4893 5791 -86 4 702 12091 135 38 17 chr3 15380157 15382315 -144217468 + L1VL2 LINE L1 1 2128 -1570 4 702 378 0 0 0 chr3 15382315 15382357 -144217426 + (CA)n Simple_repeat Simple_repeat 2 43 0 4 702 12091 115 40 9 chr3 15382357 15382880 -144216903 + L1VL2 LINE L1 2129 2648 -1050 4 702 213 39 0 0 chr3 15382880 15382906 -144216877 + (GAAA)n Simple_repeat Simple_repeat 3 28 0 4 702 12091 115 40 9 chr3 15382906 15383069 -144216714 + L1VL2 LINE L1 2649 2832 -866 4 702 264 59 0 0 chr3 15383069 15383103 -144216680 + (CAA)n Simple_repeat Simple_repeat 3 36 0 4 702 12091 115 40 9 chr3 15383103 15383306 -144216477 + L1VL2 LINE L1 2833 3064 -634 4 702 22 35 0 0 chr3 15383744 15383773 -144216010 + AT_rich Low_complexity Low_complexity 1 29 0 4 702 27 49 0 0 chr3 15383875 15383916 -144215867 + AT_rich Low_complexity Low_complexity 1 41 0 4 702 14084 127 56 9 chr3 15383916 15385657 -144214126 + L1_Mur1 LINE L1 644 2457 -3429 4 702 270 21 20 41 chr3 15385657 15385706 -144214077 + (CAAAA)n Simple_repeat Simple_repeat 2 49 0 4 702 14084 112 10 7 chr3 15385706 15386660 -144213123 + L1_Mur1 LINE L1 2458 3424 -2462 4 702 1427 12 0 0 chr3 15386660 15386820 -144212963 + L1Md_A LINE L1 5427 5586 -297 4 702 8607 22 0 0 chr3 15386820 15387816 -144211967 + L1Md_A LINE L1 5587 6582 0 4 702 481 96 0 0 chr3 15387831 15387904 -144211879 + L1_Mur1 LINE L1 3411 3483 -2403 4 702 30270 80 2 0 chr3 15387905 15393085 -144206698 + L1Md_F2 LINE L1 399 5585 -298 4 702 7809 62 4 1 chr3 15393086 15394077 -144205706 + L1Md_F2 LINE L1 5587 6580 -2 4 702 8020 106 2 1 chr3 15394080 15395342 -144204441 + L1_Mur1 LINE L1 3475 4738 -1148 4 702 2888 106 23 7 chr3 15395342 15395771 -144204012 + Lx3_Mus LINE L1 6567 7002 -7 4 702 23097 174 31 52 chr3 15395807 15397152 -144202631 + L1_Mus3 LINE L1 378 1719 -4164 4 702 3524 53 0 0 chr3 15397152 15397586 -144202197 + L1Md_T LINE L1 6149 6582 0 4 702 23097 139 13 48 chr3 15397586 15402539 -144197244 + L1_Mus3 LINE L1 1720 6635 -3 4 702 222 37 0 0 chr3 15403253 15403280 -144196503 + (A)n Simple_repeat Simple_repeat 1 27 0 4 702 6032 195 24 27 chr3 15403281 15404561 -144195222 + Lx4A LINE L1 5783 7058 0 5 702 757 73 0 0 chr3 15404567 15404676 -144195107 - L1_Mm LINE L1 -3346 2537 2429 5 702 2842 67 38 8 chr3 15404676 15405069 -144194714 + L1Md_F2 LINE L1 6178 6582 0 5 702 2464 85 122 8 chr3 15405201 15405579 -144194204 - BGLII LTR ERVK 0 421 1 5 702 679 311 88 76 chr3 15405583 15406059 -144193724 + RMER5 LTR ERV1 52 533 -1 5 702 690 278 90 83 chr3 15406805 15407193 -144192590 + MTE2a LTR MaLR 17 403 -16 5 702 2282 129 15 113 chr3 15407877 15408585 -144191198 + Lx LINE L1 5354 5957 -1040 5 702 3400 126 6 4 chr3 15408580 15409112 -144190671 + Lx LINE L1 6114 6646 -8 5 702 22 56 0 0 chr3 15409558 15409594 -144190189 + AT_rich Low_complexity Low_complexity 1 36 0 5 702 423 0 0 0 chr3 15409974 15410021 -144189762 + (TG)n Simple_repeat Simple_repeat 2 48 0 5 702 577 96 11 11 chr3 15412004 15412099 -144187684 + (TTCC)n Simple_repeat Simple_repeat 3 97 0 5 702 2395 204 32 4 chr3 15412754 15413260 -144186523 + RLTR28 LTR ERVL 1 520 -4 5 702 180 324 59 0 chr3 15413421 15413489 -144186294 + MIRb SINE MIR 104 175 -93 5 702 218 303 79 0 chr3 15413553 15413642 -144186141 + MIRb SINE MIR 88 183 -85 5 702 201 336 70 9 chr3 15414951 15415065 -144184718 + MIR3 SINE MIR 10 130 -78 5 702 410 291 59 59 chr3 15415329 15415618 -144184165 + Lx6 LINE L1 5947 6235 -1225 5 702 39 38 0 0 chr3 15415696 15415749 -144184034 + AT_rich Low_complexity Low_complexity 1 53 0 5 702 1079 278 207 49 chr3 15418132 15418154 -144181629 + RMER12 LTR ERVK 753 769 -553 5 702 564 121 0 0 chr3 15418154 15418245 -144181538 + (TCCA)n Simple_repeat Simple_repeat 1 91 0 5 702 1079 278 207 49 chr3 15418245 15418359 -144181424 + RMER12 LTR ERVK 770 963 -359 5 702 600 14 0 0 chr3 15418359 15418428 -144181355 + (TA)n Simple_repeat Simple_repeat 2 70 0 5 702 1079 278 207 49 chr3 15418428 15418782 -144181001 + RMER12 LTR ERVK 964 1322 0 5 702 655 274 32 8 chr3 15419340 15419590 -144180193 + Lx5 LINE L1 909 1164 -6564 5 702 603 208 19 19 chr3 15419601 15419758 -144180025 + Lx5 LINE L1 5814 5970 -1080 5 702 1299 231 3 0 chr3 15419821 15420119 -144179664 + Lx2 LINE L1 395 693 -6393 5 702 679 217 65 0 chr3 15420119 15420303 -144179480 + Lx2 LINE L1 4800 4995 -882 5 702 10628 168 64 5 chr3 15420301 15422206 -144177577 - L1_Mur1 LINE L1 -1209 4677 2659 5 702 288 0 0 0 chr3 15422206 15422238 -144177545 + (TA)n Simple_repeat Simple_repeat 2 33 0 5 702 10628 168 64 5 chr3 15422238 15422550 -144177233 - L1_Mur1 LINE L1 -3228 2658 2332 5 702 6024 153 25 4 chr3 15422550 15424021 -144175762 + Lx LINE L1 5142 6648 -6 5 702 189 0 0 0 chr3 15424143 15424164 -144175619 + (CAAAA)n Simple_repeat Simple_repeat 3 23 0 5 702 6887 153 20 55 chr3 15424167 15425988 -144173795 + Lx2 LINE L1 4975 6994 -3 5 702 755 316 44 47 chr3 15427049 15427345 -144172438 + MTE2a LTR MaLR 61 355 -24 5 702 571 126 0 0 chr3 15427659 15427746 -144172037 - L1Md_F2 LINE L1 -209 6788 6702 5 702 1072 164 39 0 chr3 15427746 15427954 -144171829 + Lx2 LINE L1 6778 6993 -4 5 702 210 128 0 0 chr3 15427954 15427993 -144171790 + (TGAA)n Simple_repeat Simple_repeat 3 41 0 5 702 186 71 0 0 chr3 15428925 15428953 -144170830 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 5 702 3298 151 7 20 chr3 15428970 15429530 -144170253 - Lx LINE L1 0 6654 6102 5 702 1762 130 0 11 chr3 15429531 15429811 -144169972 + L1_Mm LINE L1 5409 5685 -198 5 702 31947 83 3 2 chr3 15429831 15436055 -144163728 - L1Md_F2 LINE L1 -2 6580 353 5 702 958 73 7 0 chr3 15436052 15436188 -144163595 + L1_Mus4 LINE L1 5673 5809 -827 5 702 2196 132 11 24 chr3 15436188 15436561 -144163222 + Lx2 LINE L1 6630 6997 0 5 702 2500 182 24 0 chr3 15436667 15437128 -144162655 + Lx3B LINE L1 6502 6973 0 5 702 541 275 147 45 chr3 15437356 15437642 -144162141 + MLT-int LTR MaLR 1400 1714 -21 5 702 3486 97 65 2 chr3 15437751 15438305 -144161478 + L1_Mus3 LINE L1 6098 6638 0 5 702 446 270 79 79 chr3 15438537 15438790 -144160993 + LTR48 LTR ERV1 532 784 -3 5 702 226 305 0 24 chr3 15438790 15438874 -144160909 + CT-rich Low_complexity Low_complexity 1 82 0 5 702 313 286 11 38 chr3 15438877 15438988 -144160795 - ID4_ SINE ID -45 107 1 5 702 1014 88 130 40 chr3 15439387 15439564 -144160219 + B2_Mm2 SINE B2 2 194 -1 5 702 996 313 27 18 chr3 15439948 15440283 -144159500 - MTE2b LTR MaLR -3 376 39 5 702 674 257 187 13 chr3 15440453 15440768 -144159015 + ORR1D1 LTR MaLR 1 370 -4 5 702 1688 225 40 8 chr3 15440789 15441161 -144158622 + ORR1B1 LTR MaLR 5 388 -6 5 702 538 316 137 7 chr3 15441443 15441742 -144158041 - MLT1B LTR MaLR -52 338 1 5 702 3650 91 0 2 chr3 15441964 15442459 -144157324 - L1_Mus2 LINE L1 0 6566 6073 5 702 904 181 13 124 chr3 15444091 15444324 -144155459 + RMER19C LTR ERVK 1 207 -404 5 702 29171 140 15 14 chr3 15444345 15449399 -144150384 + L1_Mus1 LINE L1 217 5323 -560 5 702 2456 134 40 78 chr3 15449399 15449900 -144149883 + RLTR45 LTR ERVK 1 482 0 5 702 29171 85 11 16 chr3 15449900 15451144 -144148639 + L1_Mus1 LINE L1 5324 6555 -12 5 702 1275 257 84 92 chr3 15451165 15451655 -144148128 + RMER19C LTR ERVK 176 737 0 5 702 516 84 0 0 chr3 15451912 15451995 -144147788 + (TTTTG)n Simple_repeat Simple_repeat 1 83 0 5 702 1023 95 0 7 chr3 15451996 15452144 -144147639 - B1_Mm SINE Alu 0 147 1 5 702 188 377 17 9 chr3 15452761 15452876 -144146907 - L2a LINE L2 0 3426 3311 5 702 456 19 0 0 chr3 15453001 15453054 -144146729 + (TA)n Simple_repeat Simple_repeat 1 53 0 5 702 4429 236 19 43 chr3 15453209 15453430 -144146353 - L1_Mur2 LINE L1 -627 5250 5051 5 702 1070 67 0 0 chr3 15453430 15453564 -144146219 + B1_Mm SINE Alu 1 134 -13 5 702 213 39 0 0 chr3 15453567 15453593 -144146190 + (CAAAA)n Simple_repeat Simple_repeat 3 28 0 5 702 4429 236 19 43 chr3 15453593 15453961 -144145822 - L1_Mur2 LINE L1 -827 5050 4695 5 702 980 117 0 52 chr3 15453961 15454114 -144145669 + B1_Mus1 SINE Alu 2 146 -2 5 702 4429 236 19 43 chr3 15454114 15454763 -144145020 - L1_Mur2 LINE L1 -1183 4694 4037 5 702 927 175 103 0 chr3 15454761 15454955 -144144828 + L1_Mur3 LINE L1 5256 5469 -411 5 702 993 164 0 0 chr3 15454956 15455115 -144144668 + B2_Mm2 SINE B2 3 161 -34 5 702 273 57 0 0 chr3 15455116 15455151 -144144632 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 5 702 1742 248 10 5 chr3 15455155 15455565 -144144218 + L1_Mur3 LINE L1 5460 5871 -9 5 702 1118 348 52 17 chr3 15455576 15456099 -144143684 + Lx5 LINE L1 6492 7032 -18 5 702 444 342 61 4 chr3 15456154 15456433 -144143350 + L1_Rod LINE L1 1914 2208 -3639 5 702 5934 87 13 20 chr3 15456434 15457266 -144142517 - L1_Mur1 LINE L1 -1573 4313 3479 5 702 206 32 0 31 chr3 15457266 15457298 -144142485 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 5 702 5934 87 13 20 chr3 15457298 15457364 -144142419 - L1_Mur1 LINE L1 -2408 3478 3421 5 702 183 42 0 0 chr3 15457854 15457878 -144141905 + (CAAAAA)n Simple_repeat Simple_repeat 2 25 0 5 702 1656 161 46 68 chr3 15457885 15458228 -144141555 - L1_Mur2 LINE L1 -93 5784 5453 5 702 311 0 0 25 chr3 15458228 15458268 -144141515 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 5 702 1656 161 46 68 chr3 15458268 15458290 -144141493 - L1_Mur2 LINE L1 -425 5452 5427 5 702 3085 72 0 12 chr3 15458319 15458738 -144141045 - L1Md_F2 LINE L1 0 6582 6169 5 702 851 104 0 0 chr3 15458738 15458853 -144140930 - B1_Mm SINE Alu -13 134 20 5 702 2017 33 0 0 chr3 15458849 15459094 -144140689 - MTA_Mm LTR MaLR -151 245 1 5 702 195 306 50 50 chr3 15460933 15461074 -144138709 + L2 LINE L2 2579 2719 -700 5 702 9390 103 6 1 chr3 15461701 15463813 -144135970 + L1_Mus2 LINE L1 4444 6566 0 5 702 314 259 34 25 chr3 15463916 15464035 -144135748 + CT-rich Low_complexity Low_complexity 4 123 0 5 702 239 333 12 0 chr3 15464048 15464129 -144135654 - ID4_ SINE ID 0 83 2 5 702 23 0 0 0 chr3 15464508 15464531 -144135252 + AT_rich Low_complexity Low_complexity 1 23 0 5 702 595 265 178 12 chr3 15464575 15464860 -144134923 - ORR1D1 LTR MaLR -24 354 12 5 702 313 275 0 32 chr3 15465026 15465120 -144134663 + MTE2b LTR MaLR 289 379 0 5 702 231 343 68 10 chr3 15465212 15465315 -144134468 + L1MCa LINE L1 496 604 -5904 5 702 321 157 17 34 chr3 15465375 15465494 -144134289 + (TA)n Simple_repeat Simple_repeat 2 118 0 5 702 33 100 0 0 chr3 15465543 15465653 -144134130 + AT_rich Low_complexity Low_complexity 1 110 0 5 702 223 274 0 35 chr3 15465718 15465805 -144133978 + (TATG)n Simple_repeat Simple_repeat 3 86 0 5 87 1846 205 10 8 chr3 15466336 15466729 -144133054 + ORR1B1 LTR MaLR 1 394 0 5 703 585 312 85 12 chr3 15467167 15467426 -144132357 - MLT1B LTR MaLR -52 338 61 5 703 8016 54 5 0 chr3 15467799 15469367 -144130416 - L1Md_F2 LINE L1 0 6582 5008 5 703 275 136 17 0 chr3 15470032 15470091 -144129692 + (TA)n Simple_repeat Simple_repeat 1 60 0 5 703 1261 110 64 5 chr3 15470457 15470677 -144129106 + L1_Mus4 LINE L1 6399 6631 -5 5 703 202 367 33 7 chr3 15471765 15471916 -144127867 - L2a LINE L2 0 3426 3272 5 703 234 0 0 0 chr3 15471931 15471957 -144127826 + (TA)n Simple_repeat Simple_repeat 2 27 0 5 703 3762 70 0 0 chr3 15472030 15472512 -144127271 + L1Md_F2 LINE L1 6101 6582 0 5 703 809 187 0 6 chr3 15472662 15472829 -144126954 - L1_Mur2 LINE L1 -628 5252 5087 5 703 7363 76 18 0 chr3 15472825 15473840 -144125943 - L1_Mus2 LINE L1 0 6566 5533 5 703 2844 210 18 26 chr3 15473831 15474495 -144125288 - L1_Mur2 LINE L1 -1162 4715 4057 5 703 2368 232 32 10 chr3 15474510 15475094 -144124689 + L1_Mur2 LINE L1 5255 5851 -26 5 703 909 366 31 75 chr3 15475117 15475673 -144124110 + Lx5 LINE L1 6486 7016 -34 5 703 917 276 83 20 chr3 15475725 15475973 -144123810 + L1_Rod LINE L1 1916 2174 -3673 5 703 2931 70 36 0 chr3 15475973 15476359 -144123424 - MTB LTR MaLR 0 400 1 5 703 917 276 83 20 chr3 15476359 15476505 -144123278 + L1_Rod LINE L1 2175 2335 -3512 5 703 1354 190 44 18 chr3 15476859 15477132 -144122651 + Lx4A LINE L1 6329 6608 -450 5 703 7381 100 26 15 chr3 15477131 15478932 -144120851 + L1VL2 LINE L1 205 2031 -1584 5 703 693 274 56 34 chr3 15479014 15479422 -144120361 - L1_Mur3 LINE L1 -1217 4663 4247 5 703 230 183 42 14 chr3 15479506 15479578 -144120205 - L1_Rod LINE L1 -1976 3871 3798 5 703 486 0 0 0 chr3 15479585 15479639 -144120144 + (CAAAA)n Simple_repeat Simple_repeat 2 55 0 5 703 1973 186 10 15 chr3 15479639 15480033 -144119750 + Lx4A LINE L1 6665 7056 -2 5 703 312 127 0 0 chr3 15480044 15480099 -144119684 + (A)n Simple_repeat Simple_repeat 1 55 0 6 703 1386 265 63 54 chr3 15480289 15480935 -144118848 - Lx7 LINE L1 -1315 6381 5730 6 703 1405 224 107 34 chr3 15481162 15481629 -144118154 - Lx7 LINE L1 -967 4913 4413 6 703 363 330 53 71 chr3 15481629 15481854 -144117929 - RMER12 LTR ERVK 0 1322 1102 6 703 2896 143 10 4 chr3 15482051 15482536 -144117247 - RLTR22_Mur LTR ERVK -993 855 368 6 703 8191 91 1 8 chr3 15482539 15484182 -144115601 - L1_Mus1 LINE L1 0 6567 4922 6 703 803 104 104 0 chr3 15484182 15484317 -144115466 + L1Md_F2 LINE L1 6430 6578 -4 6 703 8191 136 2 19 chr3 15484317 15484692 -144115091 - L1_Mus1 LINE L1 -962 4921 4572 6 703 1620 165 3 72 chr3 15484692 15485025 -144114758 - RLTR22_Mur LTR ERVK -1453 395 86 6 703 20387 123 22 17 chr3 15485033 15485555 -144114228 + L1_Mus2 LINE L1 2466 2988 -2895 6 703 860 80 22 7 chr3 15485555 15485693 -144114090 + L1Md_F2 LINE L1 6443 6582 0 6 703 20387 116 19 14 chr3 15485693 15488979 -144110804 + L1_Mus2 LINE L1 2989 6290 -276 6 703 230 136 23 0 chr3 15489598 15489642 -144110141 + A-rich Low_complexity Low_complexity 1 45 0 6 703 400 312 7 20 chr3 15489798 15489945 -144109838 + B1_Mur2 SINE Alu 5 149 0 6 703 243 140 0 0 chr3 15490082 15490132 -144109651 + (TTTG)n Simple_repeat Simple_repeat 3 52 0 6 703 3744 136 9 0 chr3 15490388 15490967 -144108816 - MT2B2 LTR ERVL 0 584 1 6 703 265 79 0 0 chr3 15490967 15491005 -144108778 - MERVL-int LTR ERVL 0 5485 5448 6 703 246 206 13 27 chr3 15491005 15491080 -144108703 - ORR1A3-int LTR MaLR -1323 640 567 6 703 308 73 91 0 chr3 15491086 15491141 -144108642 - MERVL-int LTR ERVL -138 5623 5564 6 703 6551 189 14 6 chr3 15491226 15492357 -144107426 - MERVL-int LTR ERVL -365 5396 4257 6 703 9752 174 24 6 chr3 15492356 15494092 -144105691 - MERVL-int LTR ERVL -1523 3962 2196 6 703 3611 224 11 5 chr3 15494673 15495618 -144104165 - MERVL-int LTR ERVL -3452 2309 1237 6 703 503 168 31 14 chr3 15495618 15495754 -144104029 - MT2B2 LTR ERVL -333 142 2 6 703 2564 178 24 74 chr3 15496476 15497602 -144102181 + L1Md_F LINE L1 175 1303 -2514 6 703 3217 82 20 0 chr3 15497601 15498050 -144101733 - L1_Mm LINE L1 -1332 4551 4094 6 703 8158 98 2 1 chr3 15498050 15499849 -144099934 + L1_Mus1 LINE L1 4766 6566 -1 6 703 180 0 0 0 chr3 15499855 15499875 -144099908 + (GAAAA)n Simple_repeat Simple_repeat 1 20 0 6 703 594 139 25 0 chr3 15499875 15499997 -144099786 + L1Md_F LINE L1 1295 1419 -2398 6 703 4486 116 6 1 chr3 15500000 15500720 -144099063 + L1_Mus2 LINE L1 1519 2241 -3642 1 703 7708 117 14 6 chr3 15500715 15502571 -144097212 + L1_Mus2 LINE L1 4695 6563 -3 1 703 590 310 77 37 chr3 15502726 15503078 -144096705 + ORR1D2 LTR MaLR 3 368 -2 2 703 4735 175 14 6 chr3 15503376 15504268 -144095515 + L1_Mur2 LINE L1 4893 5791 -86 3 703 12145 121 25 46 chr3 15504269 15506323 -144093460 + L1VL2 LINE L1 67 2045 -1570 4 703 360 0 0 0 chr3 15506323 15506363 -144093420 + (CA)n Simple_repeat Simple_repeat 2 41 0 5 703 12145 117 35 7 chr3 15506363 15506884 -144092899 + L1VL2 LINE L1 2046 2565 -1050 4 703 213 39 0 0 chr3 15506884 15506910 -144092873 + (GAAA)n Simple_repeat Simple_repeat 3 28 0 6 703 12145 117 35 7 chr3 15506910 15507075 -144092708 + L1VL2 LINE L1 2566 2751 -864 4 703 369 43 0 0 chr3 15507075 15507122 -144092661 + (CAA)n Simple_repeat Simple_repeat 2 48 0 7 703 12145 117 35 7 chr3 15507122 15507324 -144092459 + L1VL2 LINE L1 2752 2980 -635 4 703 27 49 0 0 chr3 15507894 15507935 -144091848 + AT_rich Low_complexity Low_complexity 1 41 0 8 703 14130 131 58 19 chr3 15507941 15509670 -144090113 + L1_Mur1 LINE L1 651 2459 -3427 9 703 362 0 69 0 chr3 15509670 15509728 -144090055 + (CAA)n Simple_repeat Simple_repeat 2 63 0 1 703 14130 115 10 17 chr3 15509728 15510772 -144089011 + L1_Mur1 LINE L1 2460 3483 -2403 9 703 6618 72 1 1 chr3 15510772 15512336 -144087447 + L1Md_F LINE L1 400 1963 -3920 1 703 4820 70 0 0 chr3 15512334 15512978 -144086805 + L1Md_F LINE L1 3730 4373 -1510 1 703 5559 24 0 48 chr3 15512979 15513743 -144086040 + L1Md_A LINE L1 643 1361 -4522 1 703 236 327 0 0 chr3 15514369 15514470 -144085313 + MurSatRep1 Unknown Unknown 628 728 -1409 1 703 924 169 0 0 chr3 15514860 15515232 -144084551 + MMSAT4 Satellite Satellite 1 372 0 1 703 1094 179 20 8 chr3 15515247 15515906 -144083877 + MMSAT4 Satellite Satellite 1 666 0 1 703 707 317 12 16 chr3 15516418 15516665 -144083118 + RMER15 LTR ERVL 231 476 -99 1 703 36387 14 0 0 chr3 15516677 15520917 -144078866 + L1Md_A LINE L1 1346 5586 -297 1 703 8694 19 0 0 chr3 15520917 15521912 -144077871 + L1Md_A LINE L1 5587 6581 -1 1 703 8548 93 21 1 chr3 15521912 15523112 -144076671 + L1Md_F2 LINE L1 4362 5585 -298 1 703 8079 50 2 1 chr3 15523113 15524105 -144075678 + L1Md_F2 LINE L1 5587 6579 -3 1 703 16054 103 13 4 chr3 15524108 15525990 -144073793 + Lx3_Mus LINE L1 3475 5359 -527 1 703 7276 49 1 0 chr3 15525990 15526888 -144072895 + L1Md_F2 LINE L1 5684 6582 0 1 703 16054 103 13 4 chr3 15526888 15527197 -144072586 + Lx3_Mus LINE L1 5360 5682 -204 1 703 180 0 0 0 chr3 15527197 15527217 -144072566 + (TG)n Simple_repeat Simple_repeat 1 20 0 2 703 16054 107 15 55 chr3 15527217 15528610 -144071173 + Lx3_Mus LINE L1 5680 7001 -8 1 703 25520 151 28 12 chr3 15528640 15534637 -144065146 + L1_Mus3 LINE L1 543 6635 -3 2 703 26 82 0 0 chr3 15535291 15535352 -144064431 + AT_rich Low_complexity Low_complexity 1 61 0 2 703 5998 201 24 23 chr3 15535360 15536635 -144063148 + Lx4A LINE L1 5783 7058 0 2 703 464 62 0 0 chr3 15536641 15536705 -144063078 - MusHAL1 LINE L1 -1378 1334 1271 2 703 1003 9 0 0 chr3 15536702 15536814 -144062969 - L1_Mm LINE L1 -974 4909 4798 2 703 1358 111 10 20 chr3 15536889 15537267 -144062516 - BGLII LTR ERVK 0 421 1 2 703 712 308 86 75 chr3 15537271 15537748 -144062035 + RMER5 LTR ERV1 52 533 -1 2 703 707 276 89 83 chr3 15538485 15538882 -144060901 + MTE2a LTR MaLR 10 403 -16 2 703 4030 143 138 118 chr3 15539567 15540783 -144059000 + L1_Mus4 LINE L1 5354 6628 -8 2 703 486 0 0 0 chr3 15541713 15541767 -144058016 + (TG)n Simple_repeat Simple_repeat 1 54 0 3 703 784 55 9 9 chr3 15543751 15543862 -144055921 + (TTCC)n Simple_repeat Simple_repeat 3 113 0 3 703 2428 200 32 4 chr3 15544517 15545023 -144054760 + RLTR28 LTR ERVL 1 520 -4 3 703 1412 34 79 0 chr3 15545063 15545222 -144054561 + B2_Mm1t SINE B2 2 160 -33 3 703 315 0 0 0 chr3 15545222 15545257 -144054526 + (TAAA)n Simple_repeat Simple_repeat 3 37 0 3 703 1412 34 79 0 chr3 15545257 15545275 -144054508 + B2_Mm1t SINE B2 161 191 -2 3 703 218 341 56 35 chr3 15545542 15545685 -144054098 + MIRb SINE MIR 88 233 -35 3 703 209 321 79 18 chr3 15546427 15546541 -144053242 + MIR3 SINE MIR 10 130 -78 3 703 533 279 59 62 chr3 15546805 15547095 -144052688 + Lx6 LINE L1 5947 6235 -1225 3 703 2066 35 119 0 chr3 15547841 15548102 -144051681 + RLTR10B LTR ERVK 1 292 0 3 703 319 297 40 102 chr3 15548153 15548378 -144051405 + L1M4c LINE L1 1277 1487 -4897 3 703 480 149 0 0 chr3 15549766 15549860 -144049923 + (TCCA)n Simple_repeat Simple_repeat 1 94 0 4 703 1184 272 195 37 chr3 15549860 15549993 -144049790 + RMER12 LTR ERVK 758 963 -359 4 703 396 0 0 0 chr3 15549993 15550037 -144049746 + (TA)n Simple_repeat Simple_repeat 2 45 0 4 703 1184 272 195 37 chr3 15550037 15550391 -144049392 + RMER12 LTR ERVK 964 1322 0 4 703 279 0 0 0 chr3 15550920 15550951 -144048832 + (A)n Simple_repeat Simple_repeat 1 31 0 4 703 721 275 36 8 chr3 15550974 15551223 -144048560 + Lx5 LINE L1 909 1164 -6564 4 703 661 208 19 13 chr3 15551234 15551390 -144048393 + Lx5 LINE L1 5814 5970 -1080 4 703 4585 180 16 12 chr3 15551453 15553306 -144046477 + L1_Mur2 LINE L1 378 1946 -3931 4 703 9269 154 17 112 chr3 15553303 15554361 -144045422 + L1_Mur2 LINE L1 3232 4210 -1667 4 703 3219 127 0 2 chr3 15554361 15554850 -144044933 - L1_Mus4 LINE L1 -5 6631 6144 4 703 9269 154 17 112 chr3 15554850 15556045 -144043738 + L1_Mur2 LINE L1 4211 5272 -605 4 703 21712 36 0 69 chr3 15556043 15559049 -144040734 + L1Md_F2 LINE L1 2786 5585 -298 4 703 7864 54 3 2 chr3 15559050 15560031 -144039752 + L1Md_F2 LINE L1 5587 6568 -14 4 703 2547 176 49 10 chr3 15560035 15560541 -144039242 + L1_Mur2 LINE L1 5280 5805 -72 4 703 256 163 122 0 chr3 15560539 15560588 -144039195 - L1_Mur2 LINE L1 -807 5070 5016 4 703 2931 189 40 8 chr3 15560613 15561206 -144038577 + Lx4A LINE L1 6445 7056 -2 4 703 244 164 16 16 chr3 15561338 15561400 -144038383 + Lx5 LINE L1 1107 1168 -6560 5 703 932 287 51 39 chr3 15561387 15561832 -144037951 + Lx5 LINE L1 5795 6262 -788 5 703 27 29 0 0 chr3 15561910 15561944 -144037839 + AT_rich Low_complexity Low_complexity 1 34 0 5 703 24 32 0 0 chr3 15561994 15562025 -144037758 + AT_rich Low_complexity Low_complexity 1 31 0 5 703 10239 137 73 11 chr3 15562719 15563697 -144036086 + L1Md_F LINE L1 157 1594 -4289 5 703 3060 37 0 13 chr3 15563697 15564079 -144035704 + L1Md_F3 LINE L1 6208 6584 0 5 703 10239 104 16 22 chr3 15564079 15565324 -144034459 + L1Md_F LINE L1 1595 2841 -3042 5 703 5599 103 5 43 chr3 15566167 15567055 -144032728 + L1_Mus3 LINE L1 5779 6632 -6 5 703 357 24 0 0 chr3 15567680 15567722 -144032061 + (TG)n Simple_repeat Simple_repeat 1 42 0 5 703 236 210 0 90 chr3 15567726 15567815 -144031968 + GA-rich Low_complexity Low_complexity 4 84 0 5 703 504 48 0 0 chr3 15568087 15568150 -144031633 + (GAAA)n Simple_repeat Simple_repeat 2 64 0 5 703 836 136 22 22 chr3 15568150 15568330 -144031453 + GA-rich Low_complexity Low_complexity 1 180 0 5 703 686 124 18 0 chr3 15568332 15568445 -144031338 - MusHAL1 LINE L1 -302 2410 2296 6 703 1959 190 9 5 chr3 15568465 15568894 -144030889 + Lx2 LINE L1 4565 4995 -882 6 703 10330 182 73 12 chr3 15568892 15571104 -144028679 - L1_Mur2 LINE L1 -1209 4668 2321 6 703 6512 144 31 3 chr3 15571104 15572563 -144027220 + Lx LINE L1 5142 6647 -7 6 703 7159 155 20 65 chr3 15572709 15574548 -144025235 + Lx2 LINE L1 4975 6994 -3 6 703 826 315 40 47 chr3 15575593 15575893 -144023890 + MTE2a LTR MaLR 61 358 -21 6 703 625 105 0 0 chr3 15576185 15576271 -144023512 - Lx2 LINE L1 -209 6788 6703 6 703 1006 179 39 0 chr3 15576271 15576478 -144023305 + Lx2 LINE L1 6777 6991 -6 6 703 408 104 0 0 chr3 15576480 15576547 -144023236 + (TGAA)n Simple_repeat Simple_repeat 3 69 0 6 703 32788 86 17 1 chr3 15577118 15582758 -144017025 - L1Md_F LINE L1 -2 5881 155 6 703 1030 66 7 0 chr3 15582759 15582896 -144016887 + L1_Mus4 LINE L1 5672 5809 -827 6 703 1981 140 53 22 chr3 15582896 15583137 -144016646 + Lx2 LINE L1 6630 6866 -131 6 703 234 0 0 0 chr3 15583137 15583163 -144016620 + (TGGG)n Simple_repeat Simple_repeat 4 29 0 7 703 1981 140 53 22 chr3 15583163 15583278 -144016505 + Lx2 LINE L1 6867 6996 -1 6 703 2409 176 28 4 chr3 15583386 15583847 -144015936 + Lx3B LINE L1 6502 6973 0 7 703 555 279 146 43 chr3 15584048 15584377 -144015406 + MLT-int LTR MaLR 1352 1714 -21 7 703 3479 95 65 2 chr3 15584486 15584990 -144014793 + L1_Mus3 LINE L1 6098 6633 -5 7 703 600 125 0 0 chr3 15585016 15585112 -144014671 + (GAAAA)n Simple_repeat Simple_repeat 3 98 0 7 703 419 262 153 32 chr3 15585348 15585537 -144014246 + LTR48 LTR ERV1 532 743 -44 7 703 285 287 9 36 chr3 15585584 15585696 -144014087 + CT-rich Low_complexity Low_complexity 4 112 0 7 703 269 308 0 0 chr3 15585716 15585781 -144014002 - tRNA-Ala-GCY_ tRNA tRNA -5 70 6 7 703 222 329 0 45 chr3 15585781 15585797 -144013986 - B4 SINE B4 -207 61 1 7 703 1009 105 118 34 chr3 15586190 15586368 -144013415 + B2_Mm2 SINE B2 2 194 -1 7 703 1028 307 27 18 chr3 15586755 15587090 -144012693 - MTE2b LTR MaLR -3 376 39 8 703 671 242 188 28 chr3 15587261 15587580 -144012203 + ORR1D1 LTR MaLR 1 370 -4 8 703 1620 226 40 35 chr3 15587583 15587959 -144011824 + ORR1B1 LTR MaLR 14 391 -3 8 703 540 309 149 7 chr3 15588246 15588542 -144011241 - MLT1B LTR MaLR -52 338 1 8 703 3602 95 0 2 chr3 15588767 15589262 -144010521 - L1_Mus2 LINE L1 0 6566 6073 8 703 914 181 13 124 chr3 15590899 15591132 -144008651 + RMER19C LTR ERVK 1 207 -404 8 703 29082 146 18 14 chr3 15591153 15596210 -144003573 + L1_Mus1 LINE L1 217 5323 -560 8 703 2468 122 48 84 chr3 15596210 15596710 -144003073 + RLTR45 LTR ERVK 1 482 0 8 87 29082 91 12 16 chr3 15596710 15597963 -144001820 + L1_Mus1 LINE L1 5324 6567 0 8 704 795 289 85 13 chr3 15597973 15598441 -144001342 + RMER19C LTR ERVK 176 698 -39 8 704 231 282 34 8 chr3 15598611 15598706 -144001077 + MTC LTR MaLR 272 407 -14 8 704 468 72 0 0 chr3 15598721 15598790 -144000993 + (GTTTG)n Simple_repeat Simple_repeat 2 70 0 8 704 983 82 0 7 chr3 15598791 15598927 -144000856 - B1_Mm SINE Alu -12 135 1 9 704 210 37 0 0 chr3 15599388 15599415 -144000368 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 9 704 242 357 73 33 chr3 15599682 15599957 -143999826 - L2a LINE L2 -33 3393 3108 9 704 4107 230 19 75 chr3 15599960 15600183 -143999600 - L1_Mur3 LINE L1 -626 5254 5051 9 704 1121 68 0 20 chr3 15600183 15600333 -143999450 + B1_Mm SINE Alu 1 147 0 9 704 4107 230 19 75 chr3 15600333 15600707 -143999076 - L1_Mur3 LINE L1 -830 5050 4693 9 704 869 100 92 0 chr3 15600707 15600837 -143998946 + B1_Mus1 SINE Alu 2 143 -5 9 704 4107 230 19 75 chr3 15600837 15601327 -143998456 - L1_Mur3 LINE L1 -1188 4692 4204 9 704 438 20 0 0 chr3 15601327 15601378 -143998405 + (TA)n Simple_repeat Simple_repeat 2 52 0 9 704 4107 230 19 75 chr3 15601378 15601578 -143998205 - L1_Mur3 LINE L1 -1677 4203 4038 9 704 954 170 103 0 chr3 15601576 15601770 -143998013 + L1_Mur3 LINE L1 5256 5469 -411 9 704 1040 169 21 5 chr3 15601771 15601961 -143997822 + B2_Mm2 SINE B2 3 195 0 9 704 1821 238 10 5 chr3 15601966 15602376 -143997407 + L1_Mur3 LINE L1 5460 5871 -9 9 704 1109 351 50 17 chr3 15602387 15602911 -143996872 + Lx5 LINE L1 6492 7032 -18 9 704 474 338 61 4 chr3 15602966 15603245 -143996538 + L1_Rod LINE L1 1914 2208 -3639 1 704 5964 91 11 5 chr3 15603246 15604066 -143995717 - L1_Mur1 LINE L1 -1573 4313 3488 1 704 262 43 0 60 chr3 15604066 15604116 -143995667 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 1 704 5964 91 11 5 chr3 15604116 15604182 -143995601 - L1_Mur1 LINE L1 -2399 3487 3422 1 704 252 0 0 0 chr3 15604685 15604713 -143995070 + (CAAAAA)n Simple_repeat Simple_repeat 4 31 0 1 704 1703 178 41 39 chr3 15604720 15605125 -143994658 - L1_Mur2 LINE L1 -93 5784 5435 1 704 3134 68 0 7 chr3 15605125 15605541 -143994242 - L1Md_F2 LINE L1 0 6582 6170 1 704 1002 92 0 0 chr3 15605541 15605672 -143994111 - B1_Mm SINE Alu -12 135 5 1 704 1549 228 58 156 chr3 15605672 15605998 -143993785 - L1_Mur2 LINE L1 -430 5453 5130 1 704 380 141 14 0 chr3 15605994 15606065 -143993718 + Lx4A LINE L1 5804 5875 -1183 1 704 2763 209 9 2 chr3 15606071 15606609 -143993174 + Lx4A LINE L1 6514 7055 -3 1 704 5428 136 25 3 chr3 15606634 15607667 -143992116 + L1VL2 LINE L1 112 1170 -2445 1 704 6579 144 64 35 chr3 15607656 15608919 -143990864 + L1_Mm LINE L1 3092 4397 -1486 1 704 3139 82 12 0 chr3 15608919 15609348 -143990435 - L1_Mus1 LINE L1 -1 6566 6133 1 704 6579 144 64 35 chr3 15609348 15609407 -143990376 + L1_Mm LINE L1 4398 4453 -1430 1 704 1440 164 18 0 chr3 15609402 15609688 -143990095 + MusHAL1 LINE L1 1987 2277 -435 1 704 5256 138 43 9 chr3 15609690 15610690 -143989093 + L1VL1 LINE L1 193 1218 -2480 1 704 7451 99 4 1 chr3 15660690 15662482 -143937301 + L1_Mus2 LINE L1 4769 6566 0 1 704 289 267 34 25 chr3 15662587 15662706 -143937077 + CT-rich Low_complexity Low_complexity 4 123 0 1 704 239 333 12 0 chr3 15662719 15662800 -143936983 - ID4_ SINE ID 0 83 2 1 704 595 265 178 12 chr3 15663247 15663532 -143936251 - ORR1D1 LTR MaLR -24 354 12 1 704 313 275 0 32 chr3 15663698 15663792 -143935991 + MTE2b LTR MaLR 289 379 0 1 704 231 343 68 10 chr3 15663884 15663987 -143935796 + L1MCa LINE L1 496 604 -5904 1 704 552 133 14 27 chr3 15664047 15664194 -143935589 + (TA)n Simple_repeat Simple_repeat 2 146 0 1 704 33 100 0 0 chr3 15664243 15664353 -143935430 + AT_rich Low_complexity Low_complexity 1 110 0 1 704 223 274 0 35 chr3 15664418 15664505 -143935278 + (TATG)n Simple_repeat Simple_repeat 3 86 0 1 704 1846 205 10 8 chr3 15665037 15665430 -143934353 + ORR1B1 LTR MaLR 1 394 0 1 704 197 33 33 0 chr3 15665657 15665687 -143934096 + (CAA)n Simple_repeat Simple_repeat 2 32 0 1 704 596 316 85 12 chr3 15665875 15666134 -143933649 - MLT1B LTR MaLR -52 338 61 1 704 8207 48 3 0 chr3 15666507 15668076 -143931707 - L1Md_F2 LINE L1 -1 6581 5008 1 704 746 64 9 0 chr3 15668742 15668851 -143930932 + (TA)n Simple_repeat Simple_repeat 1 110 0 1 704 1243 114 64 5 chr3 15669221 15669441 -143930342 + L1_Mus4 LINE L1 6399 6631 -5 1 704 186 362 40 7 chr3 15670530 15670680 -143929103 - L2a LINE L2 0 3426 3272 1 704 405 0 0 0 chr3 15670695 15670740 -143929043 + (TA)n Simple_repeat Simple_repeat 1 45 0 1 704 3665 68 0 0 chr3 15670814 15671311 -143928472 + L1Md_F2 LINE L1 6101 6582 0 1 704 809 187 0 6 chr3 15671451 15671618 -143928165 - L1_Mur2 LINE L1 -628 5252 5087 1 704 7488 72 17 0 chr3 15671614 15672630 -143927153 - L1_Mus2 LINE L1 0 6566 5533 1 704 2991 207 12 18 chr3 15672621 15673284 -143926499 - L1_Mur2 LINE L1 -1162 4715 4057 1 704 2418 227 32 10 chr3 15673299 15673883 -143925900 + L1_Mur2 LINE L1 5255 5851 -26 1 704 952 375 19 64 chr3 15673945 15674458 -143925325 + Lx5 LINE L1 6527 7016 -34 1 704 973 283 76 19 chr3 15674510 15674758 -143925025 + L1_Rod LINE L1 1916 2174 -3673 1 704 2912 75 36 0 chr3 15674758 15675144 -143924639 - MTB LTR MaLR 0 400 1 1 704 973 283 76 19 chr3 15675144 15675327 -143924456 + L1_Rod LINE L1 2175 2372 -3475 1 704 7263 116 23 22 chr3 15675704 15677817 -143921966 + Lx4A LINE L1 504 2397 -3769 1 704 1654 262 41 53 chr3 15677907 15678638 -143921145 - L1_Rod LINE L1 -1236 4611 3889 1 704 1127 112 0 11 chr3 15678638 15678818 -143920965 + (TTTCC)n Simple_repeat Simple_repeat 3 180 0 1 704 1654 262 41 53 chr3 15678818 15678910 -143920873 - L1_Rod LINE L1 -1959 3888 3798 1 704 216 0 0 0 chr3 15678918 15678942 -143920841 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1 704 1930 189 13 15 chr3 15678942 15679335 -143920448 + Lx4A LINE L1 6665 7056 -2 1 704 205 152 21 21 chr3 15679337 15679384 -143920399 + A-rich Low_complexity Low_complexity 4 50 0 1 704 1523 254 63 54 chr3 15679576 15680222 -143919561 - Lx7 LINE L1 -1315 6381 5730 1 704 1351 226 106 48 chr3 15680450 15680924 -143918859 - Lx7 LINE L1 -967 4913 4413 1 704 392 338 36 53 chr3 15680924 15681149 -143918634 - RMER12 LTR ERVK 0 1322 1102 1 704 2924 128 11 2 chr3 15681346 15681814 -143917969 - RLTR22_Mur LTR ERVK -993 855 384 1 704 8332 85 2 7 chr3 15681822 15683480 -143916303 - L1_Mus1 LINE L1 0 6567 4922 1 704 946 87 20 13 chr3 15683480 15683632 -143916151 + L1Md_F2 LINE L1 6430 6582 0 1 704 8332 130 3 18 chr3 15683632 15684005 -143915778 - L1_Mus1 LINE L1 -962 4921 4572 1 704 1602 165 3 72 chr3 15684005 15684338 -143915445 - RLTR22_Mur LTR ERVK -1453 395 86 1 704 20071 123 23 22 chr3 15684346 15684868 -143914915 + L1_Mus2 LINE L1 2466 2988 -2895 1 704 853 81 22 7 chr3 15684868 15685005 -143914778 + L1Md_F2 LINE L1 6443 6581 -1 1 704 20071 115 21 18 chr3 15685005 15688303 -143911480 + L1_Mus2 LINE L1 2989 6290 -276 1 704 230 136 23 0 chr3 15688914 15688958 -143910825 + A-rich Low_complexity Low_complexity 1 45 0 1 704 439 306 7 20 chr3 15689114 15689261 -143910522 + B1_Mur2 SINE Alu 5 149 0 1 704 210 207 0 0 chr3 15689393 15689451 -143910332 + T-rich Low_complexity Low_complexity 1 58 0 1 704 3744 136 9 0 chr3 15689708 15690287 -143909496 - MT2B2 LTR ERVL 0 584 1 1 704 265 79 0 0 chr3 15690287 15690325 -143909458 - MERVL-int LTR ERVL 0 5485 5448 1 704 246 206 13 27 chr3 15690325 15690400 -143909383 - ORR1A3-int LTR MaLR -1323 640 567 1 704 7024 196 40 4 chr3 15690406 15691726 -143908057 - MERVL-int LTR ERVL -138 5623 4257 1 704 9909 172 22 5 chr3 15691725 15693462 -143906321 - MERVL-int LTR ERVL -1523 3962 2196 1 704 369 0 0 0 chr3 15693802 15693843 -143905940 + (A)n Simple_repeat Simple_repeat 1 41 0 1 704 226 324 68 34 chr3 15693891 15694038 -143905745 + RLTR41 LTR ERV1 264 415 -31 1 704 3571 226 11 5 chr3 15694067 15695012 -143904771 - MERVL-int LTR ERVL -3452 2309 1237 1 704 503 168 31 14 chr3 15695012 15695148 -143904635 - MT2B2 LTR ERVL -333 142 2 1 704 2588 171 24 75 chr3 15695861 15696988 -143902795 + L1_Mus2 LINE L1 272 1400 -2514 1 704 3179 83 22 0 chr3 15696987 15697435 -143902348 - L1_Mm LINE L1 -1332 4551 4094 1 704 8043 102 2 1 chr3 15697435 15699236 -143900547 + L1_Mus1 LINE L1 4766 6567 0 1 704 180 0 0 0 chr3 15699242 15699262 -143900521 + (GAAAA)n Simple_repeat Simple_repeat 1 20 0 1 704 4988 122 9 4 chr3 15699262 15700107 -143899676 + L1_Mus2 LINE L1 1392 2241 -3642 1 704 7681 118 13 6 chr3 15700102 15701960 -143897823 + L1_Mus2 LINE L1 4695 6563 -3 1 704 556 330 77 31 chr3 15702115 15702465 -143897318 + ORR1D2 LTR MaLR 3 368 -2 1 704 4601 183 14 6 chr3 15702763 15703655 -143896128 + L1_Mur2 LINE L1 4893 5791 -86 1 704 12252 119 24 48 chr3 15703656 15705695 -143894088 + L1VL2 LINE L1 67 2045 -1570 1 704 369 0 0 0 chr3 15705695 15705736 -143894047 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 704 12252 112 33 12 chr3 15705736 15706451 -143893332 + L1VL2 LINE L1 2046 2750 -865 1 704 318 50 0 0 chr3 15706451 15706491 -143893292 + (CAA)n Simple_repeat Simple_repeat 3 42 0 1 704 12252 112 33 12 chr3 15706491 15706694 -143893089 + L1VL2 LINE L1 2751 2982 -633 1 704 22 35 0 0 chr3 15707132 15707161 -143892622 + AT_rich Low_complexity Low_complexity 1 29 0 1 704 27 49 0 0 chr3 15707264 15707305 -143892478 + AT_rich Low_complexity Low_complexity 1 41 0 1 704 14348 123 36 18 chr3 15707305 15710095 -143889688 + L1_Mur1 LINE L1 644 3483 -2403 1 704 31565 83 2 1 chr3 15710096 15715281 -143884502 + L1Md_F2 LINE L1 399 5585 -298 1 704 7808 61 4 1 chr3 15715282 15716273 -143883510 + L1Md_F2 LINE L1 5587 6580 -2 1 704 8414 109 2 1 chr3 15716276 15717539 -143882244 + L1_Mur1 LINE L1 3475 4738 -1148 1 704 2847 115 24 0 chr3 15717539 15717965 -143881818 + Lx3_Mus LINE L1 6567 7002 -7 1 704 20385 174 35 61 chr3 15718001 15719346 -143880437 + L1_Mus3 LINE L1 555 1710 -4173 1 704 3411 65 0 0 chr3 15719346 15719780 -143880003 + L1Md_T LINE L1 6149 6582 0 1 704 20385 142 26 49 chr3 15719780 15724677 -143875106 + L1_Mus3 LINE L1 1711 6635 -3 1 704 22 35 0 0 chr3 15725330 15725359 -143874424 + AT_rich Low_complexity Low_complexity 1 29 0 1 704 6115 189 41 29 chr3 15725399 15726660 -143873123 + Lx4A LINE L1 5783 7058 0 1 704 464 62 0 0 chr3 15726665 15726729 -143873054 - MusHAL1 LINE L1 -1378 1334 1271 1 704 986 18 0 0 chr3 15726726 15726838 -143872945 - L1_Mm LINE L1 -974 4909 4798 1 704 1358 111 10 20 chr3 15726913 15727291 -143872492 - BGLII LTR ERVK 0 421 1 1 704 601 335 65 60 chr3 15727295 15727775 -143872008 + RMER5 LTR ERV1 52 533 -1 1 10 688 282 88 80 chr3 15728520 15728908 -143870875 + MTE2a LTR MaLR 16 403 -16 1 705 4005 142 139 113 chr3 15729593 15730803 -143868980 + L1_Mus4 LINE L1 5354 6628 -8 1 705 216 0 0 0 chr3 15731733 15731757 -143868026 + (TG)n Simple_repeat Simple_repeat 1 24 0 1 705 712 59 10 10 chr3 15733741 15733844 -143865939 + (TTCC)n Simple_repeat Simple_repeat 3 105 0 1 705 2249 218 32 4 chr3 15734500 15735006 -143864777 + RLTR28 LTR ERVL 1 520 -4 1 705 180 339 0 0 chr3 15735178 15735237 -143864546 + MIRb SINE MIR 117 175 -93 1 705 196 283 79 0 chr3 15735301 15735390 -143864393 + MIR SINE MIR 81 183 -85 1 705 523 298 48 48 chr3 15737101 15737390 -143862393 + Lx6 LINE L1 5947 6235 -1225 1 705 230 281 51 20 chr3 15737574 15737672 -143862111 - MLT1D LTR MaLR 0 505 405 1 705 325 244 45 120 chr3 15738197 15738397 -143861386 + L1M4c LINE L1 1303 1487 -4897 1 705 330 195 0 0 chr3 15739911 15739993 -143859790 + (TCCA)n Simple_repeat Simple_repeat 1 82 0 1 705 1300 273 181 35 chr3 15739993 15740486 -143859297 + RMER12 LTR ERVK 758 1322 0 1 705 744 281 28 8 chr3 15741043 15741294 -143858489 + Lx5 LINE L1 909 1164 -6564 1 705 661 208 19 7 chr3 15741305 15741460 -143858323 + Lx5 LINE L1 5814 5970 -1080 1 705 1397 242 3 0 chr3 15741522 15741820 -143857963 + Lx2 LINE L1 395 693 -6393 1 705 708 224 71 5 chr3 15741820 15742004 -143857779 + Lx2 LINE L1 4800 4995 -882 1 705 11457 164 63 8 chr3 15742002 15743909 -143855874 - L1_Mur1 LINE L1 -1209 4677 2659 1 705 396 0 0 0 chr3 15743909 15743953 -143855830 + (TA)n Simple_repeat Simple_repeat 2 45 0 1 705 11457 164 63 8 chr3 15743953 15744271 -143855512 - L1_Mur1 LINE L1 -3228 2658 2332 1 705 6389 147 30 5 chr3 15744271 15745738 -143854045 + Lx LINE L1 5142 6647 -7 1 705 299 45 0 22 chr3 15745860 15745906 -143853877 + (CAAAA)n Simple_repeat Simple_repeat 3 47 0 1 705 8250 150 15 50 chr3 15745911 15747995 -143851788 + Lx2 LINE L1 4999 6994 -3 1 705 818 328 27 33 chr3 15749051 15749351 -143850432 + MTE2a LTR MaLR 61 358 -21 1 705 617 103 0 0 chr3 15749662 15749749 -143850034 - Lx LINE L1 -209 6788 6702 2 705 962 188 39 0 chr3 15749749 15749957 -143849826 + Lx2 LINE L1 6778 6993 -4 2 705 219 103 0 0 chr3 15749957 15749996 -143849787 + (TGAA)n Simple_repeat Simple_repeat 3 41 0 2 705 212 169 51 0 chr3 15750900 15750959 -143848824 + T-rich Low_complexity Low_complexity 2 63 0 2 705 3470 135 9 11 chr3 15750967 15751521 -143848262 - Lx LINE L1 0 6654 6102 2 705 2768 112 20 0 chr3 15751522 15751915 -143847868 + L1_Mm LINE L1 5409 5809 -74 2 705 1829 155 64 22 chr3 15751915 15752272 -143847511 + Lx LINE L1 6282 6653 -1 2 705 2642 155 28 4 chr3 15752377 15752838 -143846945 + Lx3B LINE L1 6502 6973 0 2 705 392 108 0 35 chr3 15752838 15752924 -143846859 + (A)n Simple_repeat Simple_repeat 1 83 0 2 705 611 284 144 39 chr3 15753073 15753406 -143846377 + MLT1A-int LTR MaLR 1346 1713 -22 2 705 274 291 66 127 chr3 15753406 15753516 -143846267 + MLT1A LTR MaLR 1 112 -262 2 705 3519 90 68 2 chr3 15753516 15754019 -143845764 + L1_Mus3 LINE L1 6098 6633 -5 2 705 274 291 66 127 chr3 15754019 15754045 -143845738 + MLT1A LTR MaLR 113 128 -246 2 705 1107 80 0 0 chr3 15754045 15754196 -143845587 + (GAAAA)n Simple_repeat Simple_repeat 3 153 0 2 705 274 291 66 127 chr3 15754196 15754255 -143845528 + MLT1A LTR MaLR 129 184 -190 2 705 415 271 127 98 chr3 15754432 15754677 -143845106 + LTR48 LTR ERV1 533 784 -3 2 705 239 286 10 39 chr3 15754677 15754779 -143845004 + CT-rich Low_complexity Low_complexity 4 102 0 2 705 245 323 0 0 chr3 15754801 15754866 -143844917 - tRNA-Ala-GCY_ tRNA tRNA -7 68 4 2 705 220 318 0 45 chr3 15754866 15754880 -143844903 - B4 SINE B4 -207 54 1 2 705 1035 99 118 34 chr3 15755273 15755451 -143844332 + B2_Mm2 SINE B2 2 194 -1 2 705 1010 307 27 18 chr3 15755835 15756170 -143843613 - MTE2b LTR MaLR -3 376 39 2 705 657 255 191 16 chr3 15756341 15756656 -143843127 + ORR1D1 LTR MaLR 1 370 -4 2 705 1572 211 45 16 chr3 15756677 15757053 -143842730 + ORR1B1 LTR MaLR 5 391 -3 2 705 413 319 96 22 chr3 15757341 15757637 -143842146 - MLT1B LTR MaLR -52 338 1 2 705 3767 77 0 2 chr3 15757860 15758355 -143841428 - L1_Mus2 LINE L1 0 6566 6073 2 705 230 295 60 60 chr3 15758657 15758669 -143841114 - ID4_ SINE ID 0 83 44 2 705 244 254 16 33 chr3 15758669 15758730 -143841053 - tRNA-Ala-GCA tRNA tRNA -14 61 2 2 705 16808 128 4 15 chr3 15759150 15761271 -143838512 + L1_Mus1 LINE L1 3226 5323 -560 2 705 2568 130 58 26 chr3 15761271 15761738 -143838045 + RLTR45 LTR ERVK 1 482 0 2 705 16808 86 12 24 chr3 15761738 15763000 -143836783 + L1_Mus1 LINE L1 5324 6567 0 2 705 1291 258 79 92 chr3 15763008 15763500 -143836283 + RMER19C LTR ERVK 175 677 -60 2 705 687 69 0 0 chr3 15763757 15763859 -143835924 + (GTTTG)n Simple_repeat Simple_repeat 2 103 0 2 705 1004 86 0 7 chr3 15763859 15763999 -143835784 - B1_Mm SINE Alu -8 139 1 2 705 186 43 0 0 chr3 15764851 15764874 -143834909 + (TA)n Simple_repeat Simple_repeat 1 23 0 2 705 4183 237 29 45 chr3 15765029 15765249 -143834534 - L1_Mur2 LINE L1 -627 5250 5051 2 705 1038 75 0 0 chr3 15765249 15765383 -143834400 + B1_Mm SINE Alu 1 134 -13 2 705 297 0 0 0 chr3 15765386 15765419 -143834364 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 2 705 4183 237 29 45 chr3 15765419 15765788 -143833995 - L1_Mur2 LINE L1 -827 5050 4695 2 705 998 117 0 40 chr3 15765788 15765939 -143833844 + B1_Mus1 SINE Alu 2 146 -2 2 705 4183 237 29 45 chr3 15765939 15766429 -143833354 - L1_Mur2 LINE L1 -1183 4694 4199 2 705 579 96 0 0 chr3 15766429 15766512 -143833271 + (TA)n Simple_repeat Simple_repeat 2 84 0 2 705 4183 237 29 45 chr3 15766512 15766660 -143833123 - L1_Mur2 LINE L1 -1679 4198 4039 2 705 2566 227 18 38 chr3 15766658 15766853 -143832930 + L1_Mur3 LINE L1 5256 5440 -440 2 705 1076 148 0 6 chr3 15766853 15767029 -143832754 + B2_Mm2 SINE B2 3 177 -18 2 705 2566 227 18 38 chr3 15767029 15767461 -143832322 + L1_Mur3 LINE L1 5441 5870 -10 2 705 1090 357 50 13 chr3 15767473 15767995 -143831788 + Lx5 LINE L1 6492 7032 -18 2 705 385 342 57 7 chr3 15768049 15768332 -143831451 + L1_Rod LINE L1 1913 2209 -3638 2 705 1132 83 0 0 chr3 15768331 15768488 -143831295 - L1_Mur1 LINE L1 -1573 4313 4157 2 705 39602 30 0 6 chr3 15768485 15774635 -143825148 - L1Md_T LINE L1 0 6582 474 2 705 5074 88 18 0 chr3 15774640 15775320 -143824463 - L1_Mur1 LINE L1 -1714 4172 3480 2 705 204 40 0 0 chr3 15775320 15775345 -143824438 + (TTTG)n Simple_repeat Simple_repeat 4 28 0 2 705 5074 88 18 0 chr3 15775345 15775403 -143824380 - L1_Mur1 LINE L1 -2407 3479 3422 2 705 2829 166 47 96 chr3 15775935 15776185 -143823598 - L1_Mur2 LINE L1 -90 5787 5540 2 705 243 0 0 0 chr3 15776185 15776212 -143823571 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2 705 2829 166 47 96 chr3 15776212 15776327 -143823456 - L1_Mur2 LINE L1 -338 5539 5440 2 705 958 99 7 34 chr3 15776327 15776474 -143823309 - B1_Mm SINE Alu 0 147 5 2 705 2829 166 47 96 chr3 15776474 15776808 -143822975 - L1_Mur2 LINE L1 -438 5439 5121 2 705 246 146 0 0 chr3 15776799 15776840 -143822943 + Lx4A LINE L1 5801 5841 -1217 2 705 2788 203 9 11 chr3 15776851 15777394 -143822389 + Lx4A LINE L1 6514 7055 -3 2 705 14692 153 22 31 chr3 15777419 15779361 -143820422 + L1VL2 LINE L1 411 2310 -3573 2 705 2062 44 0 0 chr3 15779361 15779609 -143820174 - L1Md_T LINE L1 0 6582 6335 2 705 14692 162 14 55 chr3 15779609 15780437 -143819346 + L1VL2 LINE L1 2311 3080 -2803 2 705 5819 42 0 0 chr3 15780437 15781134 -143818649 + L1Md_F2 LINE L1 5886 6582 0 2 705 14692 162 14 55 chr3 15781134 15782460 -143817323 + L1VL2 LINE L1 3081 4393 -1490 2 705 3183 75 14 0 chr3 15782460 15782888 -143816895 - L1_Mus1 LINE L1 -1 6566 6133 2 705 14692 162 14 55 chr3 15782888 15782947 -143816836 + L1VL2 LINE L1 4394 4453 -1430 2 705 1374 150 14 30 chr3 15782942 15783238 -143816545 + MusHAL1 LINE L1 1987 2277 -435 2 705 5210 118 35 16 chr3 15783240 15784522 -143815261 + L1VL1 LINE L1 193 1489 -2209 2 705 2654 61 12 0 chr3 15784528 15784870 -143814913 - ORR1A0 LTR MaLR 0 346 1 2 705 474 35 0 0 chr3 15784870 15784927 -143814856 - ORR1A0-int LTR MaLR 0 1792 1736 2 705 4082 61 12 28 chr3 15784927 15785501 -143814282 + L1_Mus1 LINE L1 5739 6303 -264 2 705 2721 159 30 26 chr3 15785498 15786182 -143813601 + L1_Mur1 LINE L1 1138 1818 -4068 2 705 1642 146 0 0 chr3 15786179 15786459 -143813324 - L1_Mur1 LINE L1 -5835 1147 868 2 705 1546 102 27 0 chr3 15786459 15786684 -143813099 + L1_Mus2 LINE L1 6336 6566 0 2 705 1044 92 43 0 chr3 15786711 15786852 -143812931 + B1_Mus2 SINE Alu 1 147 0 2 705 355 77 246 0 chr3 15786861 15786926 -143812857 - L1_Mur1 LINE L1 -683 5203 5123 2 705 734 48 9 28 chr3 15786930 15787037 -143812746 - B1_Mm SINE Alu -1 146 42 2 705 214 0 0 157 chr3 15787040 15787142 -143812641 + (CTCTG)n Simple_repeat Simple_repeat 5 90 0 2 705 337 85 0 106 chr3 15787143 15787209 -143812574 - B1_Mus2 SINE Alu -88 59 1 2 705 997 86 0 0 chr3 15787209 15787360 -143812423 - L1_Mur1 LINE L1 -752 5134 4984 2 705 1491 109 9 0 chr3 15787362 15787591 -143812192 - L1Md_F2 LINE L1 0 6582 6352 2 705 1042 176 10 0 chr3 15787592 15787791 -143811992 + L1_Mur1 LINE L1 5312 5512 -374 2 705 400 56 0 0 chr3 15787790 15787844 -143811939 + L1_Mm LINE L1 2613 2666 -3217 2 705 243 178 0 0 chr3 15787849 15787894 -143811889 + L1_Mur1 LINE L1 5514 5558 -328 2 705 16253 132 10 8 chr3 15787891 15791167 -143808616 - L1VL4 LINE L1 -1849 4034 744 2 705 225 238 0 91 chr3 15791180 15791268 -143808515 - LTR87 LTR ERVL? -467 157 78 2 705 207 0 0 0 chr3 15791302 15791325 -143808458 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2 705 297 128 0 0 chr3 15791419 15791466 -143808317 + (T)n Simple_repeat Simple_repeat 1 47 0 2 705 3317 97 0 2 chr3 15792893 15793378 -143806405 - L1_Mus1 LINE L1 -650 5233 4750 2 705 7247 77 3 3 chr3 15793375 15794701 -143805082 + L1_Mus1 LINE L1 5240 6566 -1 2 705 30 27 0 0 chr3 15794745 15794782 -143805001 + AT_rich Low_complexity Low_complexity 1 37 0 2 705 351 294 78 151 chr3 15795250 15795447 -143804336 + MER20 DNA MER1_type 1 187 -32 2 705 287 303 0 0 chr3 15795447 15795523 -143804260 + ID4 SINE ID 5 80 -3 2 705 351 294 78 151 chr3 15795523 15795557 -143804226 + MER20 DNA MER1_type 188 215 -4 2 705 1926 204 76 170 chr3 15795905 15796577 -143803206 + RMER19C LTR ERVK 1 609 -2 2 705 2337 202 26 16 chr3 15796579 15797081 -143802702 + MurERV4_19-int LTR ERVK 1 507 -5273 2 705 1010 291 23 20 chr3 15797081 15797382 -143802401 + RLTR16 LTR ERVK 1 302 -203 2 705 4024 211 22 9 chr3 15797646 15798534 -143801249 + MurERV4_19-int LTR ERVK 501 1400 -4380 2 705 15637 167 19 16 chr3 15798540 15802783 -143797000 + L1VL4 LINE L1 356 4599 -1287 2 705 842 216 170 47 chr3 15802784 15803148 -143796635 + RLTR9E LTR ERVK 1 409 0 2 705 4011 158 57 70 chr3 15803165 15804448 -143795335 + ETnERV2-int LTR ERVK 17 2085 -5321 2 705 3617 161 66 67 chr3 15804473 15805436 -143794347 + ETnERV2-int LTR ERVK 2012 3441 -3965 2 705 6901 143 20 29 chr3 15805690 15807895 -143791888 + ETnERV2-int LTR ERVK 6101 7143 -263 2 705 817 196 221 65 chr3 15807896 15808279 -143791504 + RLTR13D6 LTR ERVK 93 537 -365 2 705 2809 61 0 0 chr3 15808300 15808678 -143791105 + L1Md_F3 LINE L1 5209 5586 -297 2 705 8091 43 1 2 chr3 15808679 15809663 -143790120 + L1Md_F3 LINE L1 5588 6570 -14 2 705 21 71 0 0 chr3 15810028 15810070 -143789713 + AT_rich Low_complexity Low_complexity 1 42 0 2 705 1596 114 0 4 chr3 15810351 15810588 -143789195 + L1_Mus4 LINE L1 6397 6632 -4 2 705 195 354 24 35 chr3 15811683 15811853 -143787930 - L2a LINE L2 0 3426 3259 2 705 22 56 0 0 chr3 15811859 15811895 -143787888 + AT_rich Low_complexity Low_complexity 1 36 0 2 705 4811 214 17 11 chr3 15812009 15813197 -143786586 - L1_Mur2 LINE L1 -627 5250 4056 2 705 2436 221 27 7 chr3 15813211 15813807 -143785976 + L1_Mur2 LINE L1 5255 5862 -15 2 705 1194 327 20 25 chr3 15813810 15814353 -143785430 + Lx5 LINE L1 6486 7015 -35 2 705 885 151 0 0 chr3 15814356 15814508 -143785275 + G-rich Low_complexity Low_complexity 5 156 0 2 705 1248 91 0 0 chr3 15814517 15814693 -143785090 + (GAGAA)n Simple_repeat Simple_repeat 2 177 0 2 705 950 306 34 5 chr3 15814782 15815225 -143784558 + L1_Rod LINE L1 1916 2371 -3476 2 705 3464 169 91 103 chr3 15815626 15816532 -143783251 - RMER17A2 LTR ERVK 0 906 12 2 705 3865 168 25 13 chr3 15816541 15817257 -143782526 + Lx4A LINE L1 6332 7056 -2 2 705 1349 277 74 31 chr3 15817479 15818057 -143781726 - Lx7 LINE L1 -1315 6381 5779 2 705 5897 48 0 3 chr3 15818089 15818806 -143780977 + L1Md_F2 LINE L1 5856 6570 -12 2 705 905 327 61 6 chr3 15819039 15819399 -143780384 + MLT1B LTR MaLR 1 380 -10 2 705 573 331 55 58 chr3 15820678 15820935 -143778848 + MTE2a LTR MaLR 58 313 -66 2 705 347 117 3 0 chr3 15821379 15821438 -143778345 + MTE2a LTR MaLR 288 358 -21 2 705 310 94 7 0 chr3 15821731 15821779 -143778004 + tRNA-Lys-AAG tRNA tRNA 1 50 -26 2 705 457 238 9 0 chr3 15822016 15822121 -143777662 + PB1D9 SINE Alu 1 106 -14 2 705 26 0 0 0 chr3 15822231 15822257 -143777526 + AT_rich Low_complexity Low_complexity 1 26 0 2 705 36468 43 0 3 chr3 15822544 15829064 -143770719 - L1Md_T LINE L1 0 6585 26 2 705 708 45 0 0 chr3 15829120 15829208 -143770575 + (TTTC)n Simple_repeat Simple_repeat 4 91 0 2 705 817 112 76 53 chr3 15829208 15829340 -143770443 - B1_Mm SINE Alu -12 135 1 2 705 26403 81 2 3 chr3 15829468 15834619 -143765164 + L1Md_F2 LINE L1 446 5585 -298 2 705 7769 64 5 8 chr3 15834620 15835527 -143764256 + L1Md_F2 LINE L1 5587 6495 -87 2 705 3277 46 5 0 chr3 15835527 15835921 -143763862 - MTA_Mm LTR MaLR 0 396 1 3 705 7769 64 5 8 chr3 15835921 15836009 -143763774 + L1Md_F2 LINE L1 6496 6579 -3 2 705 537 198 0 0 chr3 15836135 15836246 -143763537 + (TA)n Simple_repeat Simple_repeat 1 111 0 3 705 198 192 0 0 chr3 15836913 15836965 -143762818 + GA-rich Low_complexity Low_complexity 3 54 0 3 705 3959 100 28 2 chr3 15837239 15837821 -143761962 - L1_Mus3 LINE L1 -5 6633 6037 3 705 2500 94 0 0 chr3 15837839 15838178 -143761605 - L1_Mus1 LINE L1 -1 6566 6228 3 705 734 210 30 18 chr3 15839865 15840030 -143759753 - Lx4A LINE L1 -447 6611 6445 3 705 890 246 115 39 chr3 15840030 15840394 -143759389 + Lx2B LINE L1 6607 6998 -2 3 705 1089 218 6 77 chr3 15840403 15840741 -143759042 + L1_Mur1 LINE L1 3 316 -6668 3 705 3312 117 64 20 chr3 15840824 15841778 -143758005 + L1_Mur1 LINE L1 676 1686 -4200 3 705 1325 100 0 35 chr3 15842974 15843202 -143756581 - MusHAL1 LINE L1 -627 2085 1866 3 705 4440 112 17 40 chr3 15843203 15843957 -143755826 + RMER17D LTR ERVK 2 738 -151 3 705 1128 139 28 0 chr3 15843957 15844172 -143755611 - MusHAL1 LINE L1 -1267 1445 1225 3 705 1514 132 115 30 chr3 15844152 15844448 -143755335 + L1VL2 LINE L1 297 617 -5718 3 705 209 121 43 43 chr3 15844449 15844518 -143755265 + (TAGA)n Simple_repeat Simple_repeat 2 70 0 3 705 589 89 0 0 chr3 15844543 15844622 -143755161 + RMER17D LTR ERVK 188 266 -623 3 705 5932 103 5 7 chr3 15844622 15845593 -143754190 + MusHAL1 LINE L1 245 1213 -1499 3 705 547 142 319 0 chr3 15845594 15845735 -143754048 - MERVL_2A-int LTR ERVL -3052 2433 2248 3 705 5526 171 14 1 chr3 15845736 15846718 -143753065 - MERVL_2A-int LTR ERVL -3460 2301 1307 3 705 519 250 56 28 chr3 15846718 15846862 -143752921 - MT2B2 LTR ERVL -435 149 2 3 705 478 338 62 23 chr3 15847695 15848049 -143751734 + ORR1D2 LTR MaLR 3 370 0 3 705 1406 146 25 14 chr3 15848342 15848621 -143751162 + L1_Mur2 LINE L1 4893 5174 -703 3 705 1918 43 0 0 chr3 15848625 15848860 -143750923 - MTA_Mm LTR MaLR -161 235 1 3 705 7208 195 23 7 chr3 15848860 15850334 -143749449 + Lx4A LINE L1 5554 7051 -7 3 705 1391 35 0 6 chr3 15850335 15850509 -143749274 + (GAAA)n Simple_repeat Simple_repeat 2 174 0 3 705 1029 282 68 78 chr3 15850636 15851124 -143748659 + RMER5 LTR ERV1 52 534 0 3 705 6936 93 21 7 chr3 15851470 15852550 -143747233 + L1_Mur1 LINE L1 4712 5807 -79 3 705 310 230 38 45 chr3 15852735 15852867 -143746916 + RLTR43A LTR ERVK 201 331 -33 3 705 243 146 0 0 chr3 15852878 15852919 -143746864 + (TC)n Simple_repeat Simple_repeat 2 42 0 3 705 5646 122 8 23 chr3 15852953 15853883 -143745900 + Lx3A LINE L1 5790 6705 -276 3 705 1150 107 0 8 chr3 15854168 15854403 -143745380 + (TTTC)n Simple_repeat Simple_repeat 1 233 0 3 705 345 47 0 0 chr3 15854404 15854447 -143745336 + (TTCC)n Simple_repeat Simple_repeat 3 45 0 3 705 4584 157 34 12 chr3 15854871 15855708 -143744075 + RLTR13A LTR ERVK 1 855 0 3 705 7035 125 9 2 chr3 15855896 15856830 -143742953 + Lx3B LINE L1 5445 6377 -596 3 705 7140 110 8 4 chr3 15856830 15857849 -143741934 + RLTR13D2 LTR ERVK 1 1023 0 3 705 7035 136 11 3 chr3 15857849 15858206 -143741577 + Lx3B LINE L1 6378 6742 -231 3 705 1147 213 20 8 chr3 15859321 15859567 -143740216 + Lx3B LINE L1 6720 6968 -5 3 705 420 20 0 0 chr3 15859600 15859649 -143740134 + (TAA)n Simple_repeat Simple_repeat 1 49 0 3 706 232 296 70 0 chr3 15860951 15861022 -143738761 - MIRb SINE MIR -98 170 95 3 706 184 308 25 13 chr3 15861068 15861147 -143738636 - MIRm SINE MIR -81 195 116 3 706 214 273 222 20 chr3 15862348 15862501 -143737282 + MIR3 SINE MIR 10 193 -15 3 706 582 148 93 54 chr3 15863906 15864224 -143735559 - IAPLTR2b LTR ERVK 0 475 211 3 706 19967 17 0 0 chr3 15864224 15867295 -143732488 - L1Md_A LINE L1 -26 6556 3486 3 706 875 44 9 0 chr3 15867307 15867420 -143732363 + B1_Mus2 SINE Alu 34 147 0 3 706 369 141 26 0 chr3 15867459 15867537 -143732246 + L1Md_A LINE L1 6503 6582 0 3 706 333 107 35 23 chr3 15869293 15869379 -143730404 + (CAGA)n Simple_repeat Simple_repeat 2 88 0 3 706 5816 86 15 1 chr3 15869566 15870568 -143729215 + MusHAL1 LINE L1 579 1593 -1760 3 706 3259 94 24 2 chr3 15870570 15871037 -143728746 + L1_Mus3 LINE L1 6156 6632 -6 3 706 1392 115 39 0 chr3 15871047 15871240 -143728543 + BGLII LTR ERVK 1 194 -227 3 706 663 48 0 0 chr3 15871240 15871323 -143728460 + (GGGAA)n Simple_repeat Simple_repeat 1 83 0 3 706 1392 115 39 0 chr3 15871323 15871342 -143728441 + BGLII LTR ERVK 195 219 -202 3 706 1178 85 11 0 chr3 15871342 15871518 -143728265 + (GGAGA)n Simple_repeat Simple_repeat 1 178 0 3 706 1392 115 39 0 chr3 15871518 15871538 -143728245 + BGLII LTR ERVK 220 240 -181 3 706 2054 191 119 72 chr3 15871576 15872212 -143727571 + RMER3D-int LTR ERVK 1014 1679 -1163 3 706 2611 226 33 47 chr3 15872230 15873160 -143726623 + RMER3D-int LTR ERVK 1925 2841 -1 3 706 2598 107 47 0 chr3 15873161 15873563 -143726220 + BGLII LTR ERVK 1 421 0 3 706 10707 88 28 18 chr3 15873578 15874533 -143725250 + MusHAL1 LINE L1 947 1927 -785 3 706 207 0 0 0 chr3 15874533 15874556 -143725227 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 3 706 10707 88 28 18 chr3 15874556 15875338 -143724445 + MusHAL1 LINE L1 1928 2702 -10 3 706 2354 198 68 16 chr3 15875356 15876175 -143723608 + Lx7 LINE L1 5262 6122 -1574 3 706 1477 203 0 0 chr3 15876175 15876431 -143723352 + MTC LTR MaLR 53 308 -113 3 706 728 281 114 51 chr3 15876461 15877085 -143722698 + L1M2 LINE L1 4440 5120 -760 3 706 210 37 0 0 chr3 15877116 15877143 -143722640 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3 706 230 268 37 0 chr3 15877163 15877245 -143722538 + L1M2 LINE L1 5245 5329 -551 3 706 201 159 0 0 chr3 15877939 15877983 -143721800 + (TAG)n Simple_repeat Simple_repeat 1 44 0 3 706 1152 214 20 4 chr3 15877992 15878236 -143721547 - Lx3B LINE L1 -5 6968 6721 3 706 1693 16 0 0 chr3 15878456 15878645 -143721138 + B2_Mm1t SINE B2 1 189 -4 3 706 6902 95 65 8 chr3 15878689 15880423 -143719360 - L1Md_F LINE L1 -3539 2344 510 3 706 273 246 0 0 chr3 15880420 15880481 -143719302 - L1Md_F LINE L1 -6394 222 162 3 706 2052 155 14 0 chr3 15881334 15881689 -143718094 - Lx3B LINE L1 -231 6742 6383 3 706 6363 100 6 11 chr3 15881691 15882599 -143717184 - RLTR13D2 LTR ERVK 0 1023 121 3 706 264 170 97 0 chr3 15883430 15883492 -143716291 - MIRc SINE MIR -112 164 92 3 706 191 269 47 13 chr3 15883541 15883617 -143716166 - MIRb SINE MIR -83 193 116 3 706 23298 66 2 0 chr3 15884139 15888039 -143711744 - L1Md_F2 LINE L1 -1 6581 2675 3 706 3731 78 2 1 chr3 15888025 15888973 -143710810 + L1Md_Gf LINE L1 700 1745 -4141 3 706 249 57 0 0 chr3 15891944 15891979 -143707804 + (TCCA)n Simple_repeat Simple_repeat 1 35 0 3 706 1078 283 175 28 chr3 15891983 15892005 -143707778 + RMER12 LTR ERVK 793 814 -508 3 706 243 0 0 0 chr3 15892005 15892032 -143707751 + (TG)n Simple_repeat Simple_repeat 2 28 0 3 706 1078 283 175 28 chr3 15892032 15892116 -143707667 + RMER12 LTR ERVK 815 938 -384 3 706 990 69 0 0 chr3 15892116 15892247 -143707536 + (TAGA)n Simple_repeat Simple_repeat 4 134 0 3 706 1078 283 175 28 chr3 15892247 15892601 -143707182 + RMER12 LTR ERVK 939 1321 -1 3 706 244 361 53 0 chr3 15893151 15893359 -143706424 + L1_Mur3 LINE L1 876 1094 -6618 3 706 1151 75 7 0 chr3 15895014 15895160 -143704623 + B1_Mus2 SINE Alu 1 147 0 3 706 1076 95 0 33 chr3 15895335 15895487 -143704296 + B1_Mus2 SINE Alu 1 147 0 3 706 219 36 0 0 chr3 15895494 15895522 -143704261 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 3 706 393 125 42 0 chr3 15895525 15895597 -143704186 + L1_Mus2 LINE L1 6492 6566 0 3 706 480 18 0 0 chr3 15895940 15895997 -143703786 + (TA)n Simple_repeat Simple_repeat 1 57 0 3 706 323 310 62 52 chr3 15896239 15896433 -143703350 + HAL1-3A_ME LINE L1 2244 2439 -419 3 706 1458 185 147 19 chr3 15896488 15896958 -143702825 + RMER3D-int LTR ERVK 1014 1543 -1299 3 706 589 183 41 21 chr3 15896978 15897123 -143702660 + RMER3D-int LTR ERVK 1532 1679 -1163 3 706 2831 212 35 46 chr3 15897141 15898069 -143701714 + RMER3D-int LTR ERVK 1925 2841 -1 3 706 2570 118 40 0 chr3 15898070 15898475 -143701308 + BGLII LTR ERVK 1 421 0 3 706 10331 94 44 8 chr3 15898490 15899448 -143700335 + MusHAL1 LINE L1 947 1927 -785 3 706 243 0 0 0 chr3 15899448 15899475 -143700308 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3 706 10331 94 44 8 chr3 15899475 15899502 -143700281 + MusHAL1 LINE L1 1928 1959 -753 3 706 2458 152 28 79 chr3 15899502 15900010 -143699773 + RLTR45 LTR ERVK 1 482 0 3 706 10331 94 44 8 chr3 15900010 15900718 -143699065 + MusHAL1 LINE L1 1960 2701 -11 3 706 2263 209 68 15 chr3 15900731 15901552 -143698231 + Lx7 LINE L1 5259 6122 -1574 3 706 931 196 0 0 chr3 15901552 15901710 -143698073 + MTC LTR MaLR 53 210 -211 3 706 6161 39 2 0 chr3 15901711 15902579 -143697204 - L1Md_F2 LINE L1 -623 5959 5091 3 706 2871 56 8 5 chr3 15902579 15902953 -143696830 + L1Md_F2 LINE L1 6207 6581 -1 3 706 731 150 0 0 chr3 15902987 15903100 -143696683 + MTC LTR MaLR 196 308 -113 3 706 643 253 124 67 chr3 15903130 15903643 -143696140 + L1M2 LINE L1 4440 5036 -1107 3 706 223 26 24 49 chr3 15903748 15903789 -143695994 + (CAAAA)n Simple_repeat Simple_repeat 5 44 0 3 706 325 152 45 0 chr3 15904281 15904347 -143695436 + L1M2 LINE L1 5366 5434 -446 3 706 1819 142 64 82 chr3 15904353 15904743 -143695040 + RLTR23 LTR ERV1 1 383 -47 3 706 255 61 0 0 chr3 15904745 15904778 -143695005 + (GAAA)n Simple_repeat Simple_repeat 2 34 0 3 706 500 128 0 11 chr3 15904776 15904816 -143694967 + (GGGA)n Simple_repeat Simple_repeat 3 41 0 3 706 938 103 0 7 chr3 15904816 15904962 -143694821 + (GAAA)n Simple_repeat Simple_repeat 4 148 0 3 706 500 128 0 11 chr3 15904962 15905016 -143694767 + (GGGA)n Simple_repeat Simple_repeat 2 55 0 3 706 4318 160 109 16 chr3 15905016 15905909 -143693874 + Lx2 LINE L1 6021 6996 -1 3 706 665 333 45 66 chr3 15906931 15907272 -143692511 + MTE2a LTR MaLR 53 357 -64 3 706 613 103 0 0 chr3 15907585 15907672 -143692111 - Lx2 LINE L1 -209 6788 6702 3 706 1305 122 28 0 chr3 15907672 15907886 -143691897 + Lx2 LINE L1 6778 6997 0 3 706 207 0 0 0 chr3 15907886 15907909 -143691874 + (TAAA)n Simple_repeat Simple_repeat 1 23 0 3 706 972 112 0 0 chr3 15908995 15909129 -143690654 - B2_Mm2 SINE B2 -61 134 1 3 706 2266 157 5 2 chr3 15909129 15909526 -143690257 - Lx2 LINE L1 -643 6354 5957 3 706 231 53 0 0 chr3 15909525 15909563 -143690220 + Lx2 LINE L1 6957 6994 -3 3 706 222 37 0 0 chr3 15909564 15909591 -143690192 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 3 706 2491 36 2 259 chr3 15909615 15910140 -143689643 - RLTR10 LTR ERVK 0 390 1 3 706 14355 26 45 33 chr3 15910142 15912065 -143687718 - RLTR10-int LTR ERVK -3 1984 40 3 706 2488 36 2 259 chr3 15912074 15912599 -143687184 - RLTR10 LTR ERVK 0 390 1 3 706 1036 303 35 29 chr3 15912604 15912951 -143686832 + MTEb LTR MaLR 22 370 -9 3 706 549 235 87 10 chr3 15912956 15913162 -143686621 + L1MA6 LINE L1 5683 5904 -396 3 706 369 272 15 102 chr3 15913332 15913580 -143686203 + L1VL1 LINE L1 45 387 -6035 3 706 504 276 47 16 chr3 15913997 15914126 -143685657 - ETnERV2-int LTR ERVK -204 7202 7070 3 706 657 196 111 117 chr3 15914138 15914462 -143685321 - RLTRETN_Mm LTR ERVK 0 322 1 3 706 281 323 15 8 chr3 15914495 15914629 -143685154 + L1Md_F LINE L1 675 809 -5807 4 706 2082 168 44 61 chr3 15914631 15915082 -143684701 + L1Md_F LINE L1 725 1167 -5449 4 706 297 0 61 20 chr3 15915082 15915131 -143684652 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 4 706 27233 124 6 9 chr3 15915131 15919765 -143680018 + L1Md_F LINE L1 1168 5786 -97 4 706 4839 91 6 1 chr3 15919780 15920464 -143679319 + L1_Mus1 LINE L1 5880 6566 -1 4 706 6631 97 10 5 chr3 15920858 15921790 -143677993 - RLTR13D5 LTR ERVK 0 1023 88 4 706 908 298 70 24 chr3 15921895 15922264 -143677519 + MLT1B LTR MaLR 1 501 -4 4 706 4087 98 20 3 chr3 15922727 15923319 -143676464 - L1_Mus3 LINE L1 -6 6632 6031 4 706 1187 119 0 0 chr3 15923337 15923514 -143676269 - L1_Mus1 LINE L1 -1 6566 6390 4 706 824 224 192 16 chr3 15923672 15923990 -143675793 + ORR1D1 LTR MaLR 1 374 0 4 706 512 202 10 0 chr3 15924007 15924106 -143675677 + ORR1B1 LTR MaLR 5 104 -290 4 706 1797 252 67 81 chr3 15924105 15924670 -143675113 + RMER19C LTR ERVK 55 611 0 4 706 321 311 74 92 chr3 15925180 15925506 -143674277 + RLTR46 LTR ERVK 1 320 0 4 706 186 288 173 12 chr3 15925533 15925614 -143674169 - MIR SINE MIR -136 126 33 4 706 295 172 19 19 chr3 15926184 15926264 -143673519 + L1Md_F LINE L1 764 824 -5795 4 706 7336 136 7 30 chr3 15926266 15926954 -143672829 - L1_Mm LINE L1 -351 5532 4860 4 706 230 0 33 0 chr3 15926954 15926984 -143672799 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 4 706 7336 136 7 30 chr3 15926984 15927653 -143672130 - L1_Mm LINE L1 -1024 4859 4206 4 706 791 279 62 9 chr3 15927656 15927866 -143671917 + RMER12 LTR ERVK 1102 1322 0 4 706 214 76 43 43 chr3 15927964 15928033 -143671750 + T-rich Low_complexity Low_complexity 4 72 0 4 706 554 130 139 0 chr3 15928033 15928141 -143671642 - ETnERV2-int LTR ERVK -4789 2617 2495 4 706 2040 140 20 23 chr3 15928133 15928527 -143671256 - ETnERV2-int LTR ERVK -5162 2244 1852 4 706 29873 89 16 42 chr3 15928530 15933210 -143666573 + L1VL1 LINE L1 405 5072 -811 4 706 963 99 14 7 chr3 15933210 15933352 -143666431 + B2_Mm1t SINE B2 5 147 -46 4 706 29873 89 16 42 chr3 15933352 15934154 -143665629 + L1VL1 LINE L1 5073 5874 -9 4 706 3745 47 0 0 chr3 15934154 15934601 -143665182 + L1Md_F2 LINE L1 6122 6568 -14 4 706 9288 91 23 173 chr3 15934617 15935982 -143663801 + L1Md_F2 LINE L1 3804 5192 -691 4 706 1666 115 264 3 chr3 15935982 15936331 -143663452 - RLTR44E LTR ERVK -12 440 1 4 706 9288 91 23 173 chr3 15936331 15936716 -143663067 + L1Md_F2 LINE L1 5193 5586 -297 4 706 6950 91 13 7 chr3 15936716 15937704 -143662079 + L1Md_F2 LINE L1 5587 6580 -2 4 706 3285 166 57 51 chr3 15937727 15938528 -143661255 - ETnERV2-int LTR ERVK -5548 1858 1053 4 706 23 68 0 0 chr3 15938539 15938583 -143661200 + AT_rich Low_complexity Low_complexity 1 44 0 4 706 300 295 9 18 chr3 15938667 15938781 -143661002 - ETnERV2-int LTR ERVK -3090 224 112 4 706 764 161 0 7 chr3 15938812 15938930 -143660853 + polypyrimidine Low_complexity Low_complexity 31 148 0 4 706 1326 78 0 0 chr3 15938930 15939110 -143660673 + (TCC)n Simple_repeat Simple_repeat 1 180 0 4 706 764 161 0 7 chr3 15939110 15939135 -143660648 + polypyrimidine Low_complexity Low_complexity 6 30 0 4 706 204 67 0 0 chr3 15939145 15939175 -143660608 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 4 706 711 112 16 65 chr3 15939175 15939187 -143660596 - B1_Mus1 SINE Alu -9 139 133 4 706 3443 30 0 2 chr3 15939187 15939584 -143660199 - MTA_Mm LTR MaLR 0 396 1 4 706 711 112 16 65 chr3 15939584 15939684 -143660099 - B1_Mus1 SINE Alu -16 132 31 4 706 2368 114 79 20 chr3 15939774 15940167 -143659616 - RLTR9B2 LTR ERVK -4 416 1 4 706 2238 163 18 3 chr3 15940487 15940875 -143658908 - ORR1B1 LTR MaLR 0 394 1 4 706 3697 200 42 12 chr3 15940875 15941734 -143658049 - ORR1B1-int LTR MaLR 0 1509 705 4 706 22 35 0 0 chr3 15941907 15941936 -143657847 + AT_rich Low_complexity Low_complexity 1 29 0 4 706 262 361 0 30 chr3 15942057 15942157 -143657626 + MER102b DNA MER1_type 159 255 -86 4 706 334 343 86 36 chr3 15942908 15943047 -143656736 - RSINE1 SINE B4 0 165 20 4 706 378 266 75 45 chr3 15943786 15943920 -143655863 + MT2B LTR ERVL 454 591 -10 4 706 213 152 128 21 chr3 15944242 15944289 -143655494 + B3 SINE B2 1 52 -164 4 706 4657 112 19 0 chr3 15944743 15945586 -143654197 - Lx LINE L1 -678 5976 5109 4 706 1124 48 7 0 chr3 15946051 15946196 -143653587 + L1Md_F2 LINE L1 6436 6581 -1 4 706 449 17 17 0 chr3 15946253 15946311 -143653472 + (TG)n Simple_repeat Simple_repeat 2 60 0 4 706 1060 241 81 21 chr3 15946371 15946655 -143653128 - RMER5 LTR ERV1 -219 315 15 4 706 250 316 154 0 chr3 15946668 15946834 -143652949 - B4A SINE B4 -87 205 1 4 706 594 0 0 0 chr3 15946871 15946937 -143652846 + (GA)n Simple_repeat Simple_repeat 1 66 0 4 706 405 0 0 0 chr3 15947755 15947800 -143651983 + (TC)n Simple_repeat Simple_repeat 2 46 0 4 706 306 67 0 0 chr3 15947801 15947846 -143651937 + (TCTG)n Simple_repeat Simple_repeat 2 46 0 4 706 535 197 148 0 chr3 15948125 15948247 -143651536 - B1_Mur2 SINE Alu -1 148 9 4 706 204 40 0 0 chr3 15948395 15948420 -143651363 + (TTCA)n Simple_repeat Simple_repeat 4 28 0 4 706 258 32 0 0 chr3 15948501 15948532 -143651251 + (TG)n Simple_repeat Simple_repeat 1 31 0 4 706 228 67 0 0 chr3 15948533 15948563 -143651220 + (TA)n Simple_repeat Simple_repeat 2 31 0 4 706 264 240 373 0 chr3 15948563 15948638 -143651145 - B3A SINE B2 -93 105 3 4 706 8552 152 72 48 chr3 15949224 15951702 -143648081 + L1VL4 LINE L1 394 2918 -2965 4 706 10207 118 35 33 chr3 15951707 15953923 -143645860 + L1Md_A LINE L1 238 2458 -3425 4 706 2982 28 0 0 chr3 15953923 15954245 -143645538 + RLTRETN_Mm LTR ERVK 1 322 0 4 706 41192 37 2 9 chr3 15954245 15959124 -143640659 + MMETn-int LTR ERVK 1 4844 0 4 706 2883 43 0 0 chr3 15959124 15959446 -143640337 + RLTRETN_Mm LTR ERVK 1 322 0 4 706 27651 45 2 1 chr3 15959446 15962795 -143636988 + L1Md_A LINE L1 2453 5805 -78 4 706 2916 47 41 6 chr3 15962795 15963160 -143636623 + L1Md_F3 LINE L1 6205 6582 -2 4 706 18080 115 55 8 chr3 15963206 15965164 -143634619 + L1_Mus1 LINE L1 2909 4865 -1018 4 706 1995 152 64 81 chr3 15965164 15965586 -143634197 - RLTR9F LTR ERVK 0 415 1 4 706 18080 93 57 6 chr3 15965586 15967123 -143632660 + L1_Mus1 LINE L1 4866 6567 0 4 706 355 274 36 95 chr3 15967115 15967252 -143632531 + LSU-rRNA_Hsa rRNA rRNA 415 543 -4492 4 706 1166 88 0 7 chr3 15968032 15968180 -143631603 + B1_Mus1 SINE Alu 2 148 0 4 706 182 61 82 0 chr3 15968185 15968234 -143631549 + (CAAAA)n Simple_repeat Simple_repeat 3 55 0 4 706 219 258 0 16 chr3 15968344 15968407 -143631376 + GA-rich Low_complexity Low_complexity 1 62 0 4 706 378 107 0 0 chr3 15969083 15969139 -143630644 + (CATA)n Simple_repeat Simple_repeat 4 59 0 4 706 360 43 0 0 chr3 15969323 15969369 -143630414 + (CA)n Simple_repeat Simple_repeat 1 46 0 4 706 1015 186 5 35 chr3 15969615 15969815 -143629968 + RLTR33 LTR ERVK 1 194 -484 4 706 439 151 27 0 chr3 15969809 15969882 -143629901 + RLTR33 LTR ERVK 354 428 -250 4 706 495 142 0 0 chr3 15969882 15969988 -143629795 + (TG)n Simple_repeat Simple_repeat 2 107 0 4 706 335 25 0 0 chr3 15969993 15970033 -143629750 - HAL1-3A_ME LINE L1 -844 2014 1975 4 706 210 136 0 0 chr3 15970039 15970083 -143629700 + (TG)n Simple_repeat Simple_repeat 1 44 0 4 706 570 29 0 0 chr3 15970297 15970365 -143629418 + (TG)n Simple_repeat Simple_repeat 2 69 0 4 706 367 209 180 9 chr3 15970568 15970679 -143629104 - B1_Mur4 SINE Alu -2 148 19 4 706 477 0 0 0 chr3 15970692 15970745 -143629038 + (TA)n Simple_repeat Simple_repeat 1 53 0 4 706 284 321 0 0 chr3 15970761 15970842 -143628941 - B1_Mus2 SINE Alu 0 147 67 4 706 255 204 20 0 chr3 15971193 15971242 -143628541 - RLTR42-int LTR ERVK -3763 1759 1710 4 706 473 288 62 35 chr3 15971492 15971636 -143628147 + B1_Mur1 SINE Alu 1 148 -1 4 706 1103 75 0 6 chr3 15972563 15972723 -143627060 + (TTTC)n Simple_repeat Simple_repeat 3 161 0 4 706 204 188 0 0 chr3 15972828 15972860 -143626923 + (CAG)n Simple_repeat Simple_repeat 1 32 0 4 706 206 227 30 0 chr3 15973516 15973550 -143626233 + (TAAAG)n Simple_repeat Simple_repeat 1 34 0 4 706 1242 48 0 7 chr3 15973550 15973697 -143626086 + B1_Mus2 SINE Alu 2 147 0 4 706 206 227 30 0 chr3 15973697 15973728 -143626055 + (TAAAG)n Simple_repeat Simple_repeat 3 35 0 4 706 288 281 18 81 chr3 15974030 15974158 -143625625 - B1_Mur2 SINE Alu -1 148 21 4 706 1364 102 32 11 chr3 15974164 15974352 -143625431 + B2_Mm2 SINE B2 3 194 -1 4 706 334 233 39 94 chr3 15974399 15974527 -143625256 - L1MEf LINE L1 -4137 2063 1943 4 706 402 21 0 0 chr3 15974544 15974591 -143625192 + (TG)n Simple_repeat Simple_repeat 1 47 0 4 706 1245 68 0 0 chr3 15975117 15975265 -143624518 - B1_Mus1 SINE Alu 0 148 1 4 706 262 235 0 0 chr3 15975287 15975338 -143624445 + ID_B1 SINE B4 90 140 -84 4 706 218 143 41 0 chr3 15975338 15975387 -143624396 + (CA)n Simple_repeat Simple_repeat 2 52 0 4 706 396 0 0 0 chr3 15975492 15975536 -143624247 + (TG)n Simple_repeat Simple_repeat 2 45 0 4 706 285 29 0 0 chr3 15975536 15975570 -143624213 + (TTG)n Simple_repeat Simple_repeat 2 35 0 4 706 204 40 0 0 chr3 15975668 15975693 -143624090 + (CA)n Simple_repeat Simple_repeat 2 26 0 4 706 285 51 0 0 chr3 15975773 15975812 -143623971 + (CAGA)n Simple_repeat Simple_repeat 2 40 0 4 706 239 276 46 0 chr3 15975827 15975914 -143623869 + L1_Rod LINE L1 2921 3011 -2836 4 706 857 146 7 0 chr3 15975915 15976066 -143623717 + GA-rich Low_complexity Low_complexity 4 155 0 4 706 403 275 0 35 chr3 15976284 15976397 -143623386 - B1_Mur3 SINE Alu 0 149 41 4 706 471 35 0 0 chr3 15976423 15976480 -143623303 + (TTTC)n Simple_repeat Simple_repeat 3 59 0 4 706 514 216 68 17 chr3 15977169 15977287 -143622496 - ID_B1 SINE B4 -15 209 86 4 706 4695 65 11 4 chr3 15977315 15977875 -143621908 + LTRIS2 LTR ERV1 1 564 0 4 706 1336 27 0 0 chr3 15977957 15978104 -143621679 + B1_Mm SINE Alu 1 147 0 4 706 285 98 0 0 chr3 15978544 15978585 -143621198 + (TTTA)n Simple_repeat Simple_repeat 3 43 0 4 706 396 0 0 0 chr3 15978592 15978636 -143621147 + (TA)n Simple_repeat Simple_repeat 2 45 0 4 706 496 202 0 10 chr3 15978695 15978795 -143620988 - RLTR33 LTR ERVK -363 315 217 4 706 210 143 0 0 chr3 15978843 15978878 -143620905 + (GGA)n Simple_repeat Simple_repeat 2 36 0 4 706 429 270 72 99 chr3 15978961 15979266 -143620517 + RMER2 LTR ERV1 2 360 -207 4 706 821 318 97 48 chr3 15980483 15981275 -143618508 + MMERGLN-int LTR ERV1 1041 1871 -5685 5 706 946 345 63 58 chr3 15981412 15982691 -143617092 + MMERGLN-int LTR ERV1 2125 3394 -4384 5 706 296 200 17 0 chr3 15983363 15983423 -143616360 + RLTR42-int LTR ERVK 1699 1759 -3763 5 706 1512 94 5 0 chr3 15983892 15984084 -143615699 + B2_Mm1t SINE B2 1 193 0 5 706 291 175 0 0 chr3 15984093 15984150 -143615633 + (TAAA)n Simple_repeat Simple_repeat 1 57 0 5 706 259 297 99 0 chr3 15984181 15984272 -143615511 + B1_Mur4 SINE Alu 46 145 -5 5 706 303 272 114 46 chr3 15984370 15984501 -143615282 + ID_B1 SINE B4 4 143 -81 5 706 528 106 0 0 chr3 15984522 15984616 -143615167 + (GA)n Simple_repeat Simple_repeat 2 95 0 5 706 210 37 0 0 chr3 15984841 15984868 -143614915 + (CA)n Simple_repeat Simple_repeat 2 28 0 5 706 251 113 19 0 chr3 15984949 15985002 -143614781 + (GA)n Simple_repeat Simple_repeat 1 54 0 5 706 232 212 83 48 chr3 15985009 15985093 -143614690 + L1_Rod LINE L1 2925 3011 -2836 5 706 865 169 0 17 chr3 15985095 15985276 -143614507 + GA-rich Low_complexity Low_complexity 1 178 0 5 706 955 244 196 50 chr3 15985395 15985732 -143614051 + RMER2 LTR ERV1 1 386 -181 5 706 3016 171 191 21 chr3 15985729 15986435 -143613348 + RLTR13D3 LTR ERVK 289 1114 0 5 706 6424 114 28 5 chr3 15986990 15988592 -143611191 + L1VL2 LINE L1 9 1536 -2079 5 88 36058 43 2 4 chr3 15988589 15993804 -143605979 + L1Md_T LINE L1 287 5589 -297 5 707 8946 34 0 7 chr3 15993804 15994807 -143604976 + L1Md_T LINE L1 5590 6585 0 5 707 9316 108 13 11 chr3 15994816 15996271 -143603512 + L1VL2 LINE L1 1525 2982 -633 5 707 259 229 73 127 chr3 15996399 15996509 -143603274 - MLT1L LTR MaLR -112 498 395 5 707 758 102 8 0 chr3 15996584 15996702 -143603081 + (GGAA)n Simple_repeat Simple_repeat 3 121 0 5 707 260 206 153 12 chr3 15996716 15996796 -143602987 + PB1D9 SINE Alu 4 95 -25 5 707 233 260 170 57 chr3 15996722 15996828 -143602955 + B4 SINE B4 96 213 -79 5 707 2489 182 120 46 chr3 15997195 15997760 -143602023 + RLTR33 LTR ERVK 1 607 -71 5 707 219 217 0 0 chr3 15997834 15997880 -143601903 + (CCTG)n Simple_repeat Simple_repeat 2 47 0 5 707 357 336 0 8 chr3 15997893 15998010 -143601773 - B3 SINE B2 -44 172 57 5 707 235 308 0 0 chr3 15998799 15998851 -143600932 + B1_Mm SINE Alu 59 110 -37 5 707 34 24 0 0 chr3 15998851 15998892 -143600891 + AT_rich Low_complexity Low_complexity 1 41 0 5 707 203 157 20 0 chr3 15998901 15998952 -143600831 + (TCTG)n Simple_repeat Simple_repeat 3 54 0 5 707 1333 175 14 0 chr3 15999707 15999924 -143599859 + LSU-rRNA_Hsa rRNA rRNA 3725 3944 -1091 5 707 249 33 0 0 chr3 16000020 16000050 -143599733 + (ATG)n Simple_repeat Simple_repeat 1 30 0 1 707 852 155 23 0 chr3 16000148 16000322 -143599461 + GA-rich Low_complexity Low_complexity 1 178 0 2 707 381 268 9 35 chr3 16000452 16000568 -143599215 + ID_B1 SINE B4 33 145 -79 3 707 490 299 136 44 chr3 16002032 16002326 -143597457 + RLTR4_MM-int LTR ERV1 4111 4431 -3170 4 707 883 293 27 18 chr3 16002694 16003008 -143596775 + MuRRS4-int LTR ERV1 3533 3960 -730 5 707 234 136 0 0 chr3 16003028 16003072 -143596711 + (CTAA)n Simple_repeat Simple_repeat 1 44 0 6 707 21 95 0 0 chr3 16003102 16003165 -143596618 + AT_rich Low_complexity Low_complexity 1 63 0 7 707 265 238 16 0 chr3 16003348 16003411 -143596372 - RLTR42-int LTR ERVK -3761 1761 1698 8 707 422 240 109 34 chr3 16003546 16003684 -143596099 + B1_Mur2 SINE Alu 1 150 0 9 707 242 208 0 0 chr3 16004300 16004353 -143595430 + (TCTG)n Simple_repeat Simple_repeat 2 54 0 1 707 260 232 71 40 chr3 16004737 16004836 -143594947 + PB1D9 SINE Alu 10 111 -9 1 707 847 241 55 14 chr3 16004933 16005152 -143594631 - RLTR11A LTR ERVK 0 528 301 1 707 530 210 89 74 chr3 16005170 16005333 -143594450 + B2_Mm2 SINE B2 1 163 -32 1 707 186 71 0 0 chr3 16005333 16005361 -143594422 + (TTAA)n Simple_repeat Simple_repeat 4 31 0 1 707 530 210 89 74 chr3 16005361 16005387 -143594396 + B2_Mm2 SINE B2 164 193 -2 1 707 419 250 0 37 chr3 16005415 16005523 -143594260 + B1_Mur3 SINE Alu 46 149 0 1 707 262 302 0 30 chr3 16005540 16005639 -143594144 - L1_Rod LINE L1 -1872 3975 3880 1 707 570 124 0 0 chr3 16005680 16005769 -143594014 + (TTCC)n Simple_repeat Simple_repeat 4 92 0 1 707 372 43 0 0 chr3 16005809 16005855 -143593928 + (TC)n Simple_repeat Simple_repeat 1 46 0 1 707 180 111 0 0 chr3 16006417 16006444 -143593339 + (TTA)n Simple_repeat Simple_repeat 3 29 0 1 707 240 197 41 43 chr3 16006448 16006540 -143593243 - B1F2 SINE Alu -16 133 36 2 707 192 182 0 0 chr3 16006561 16006605 -143593178 + (TCTA)n Simple_repeat Simple_repeat 1 44 0 2 707 303 288 0 0 chr3 16006620 16006700 -143593083 - B1_Mur4 SINE Alu 0 150 71 2 707 25 51 0 0 chr3 16006850 16006889 -143592894 + AT_rich Low_complexity Low_complexity 1 39 0 2 707 402 21 0 0 chr3 16007236 16007283 -143592500 + (GA)n Simple_repeat Simple_repeat 2 48 0 2 707 270 244 80 120 chr3 16007424 16007564 -143592219 + B1_Mur1 SINE Alu 5 146 -1 2 707 280 152 30 0 chr3 16008225 16008291 -143591492 + (ATG)n Simple_repeat Simple_repeat 3 70 0 2 707 459 0 0 0 chr3 16008291 16008342 -143591441 + (TAG)n Simple_repeat Simple_repeat 2 52 0 2 707 258 32 0 0 chr3 16008847 16008878 -143590905 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2 707 630 0 0 0 chr3 16009076 16009146 -143590637 + (GGAA)n Simple_repeat Simple_repeat 3 72 0 2 707 298 295 16 54 chr3 16009263 16009392 -143590391 + ID_B1 SINE B4 50 173 -51 3 707 263 311 21 123 chr3 16009566 16009753 -143590030 + FordPrefect DNA Tip100 786 953 -730 3 707 1152 89 0 16 chr3 16010085 16010268 -143589515 + (TC)n Simple_repeat Simple_repeat 1 180 0 3 707 1604 174 47 0 chr3 16010896 16011171 -143588612 + SSU-rRNA_Hsa rRNA rRNA 852 1139 -730 3 707 922 156 28 0 chr3 16011163 16011304 -143588479 + SSU-rRNA_Hsa rRNA rRNA 1428 1572 -297 3 707 310 341 59 59 chr3 16011639 16011826 -143587957 + B3A SINE B2 2 188 -10 3 707 222 91 0 0 chr3 16013135 16013168 -143586615 + (TCTA)n Simple_repeat Simple_repeat 4 36 0 3 707 640 261 28 11 chr3 16013210 16013388 -143586395 - B3A SINE B2 -16 182 2 3 707 180 0 0 0 chr3 16014561 16014581 -143585202 + (TTG)n Simple_repeat Simple_repeat 1 20 0 3 707 221 40 58 39 chr3 16014656 16014708 -143585075 + (CAAAA)n Simple_repeat Simple_repeat 2 54 0 3 707 275 228 0 50 chr3 16015659 16015719 -143584064 + MMVL30-int LTR ERV1 1294 1350 -2348 3 707 405 149 0 0 chr3 16015832 16015899 -143583884 - B2_Mm2 SINE B2 -126 69 3 4 707 705 199 0 14 chr3 16016264 16016402 -143583381 + B1_Mus1 SINE Alu 12 147 -1 4 707 371 205 122 66 chr3 16016865 16017027 -143582756 - RLTR13D3 LTR ERVK 0 1114 981 4 707 249 167 0 0 chr3 16017278 16017320 -143582463 - B2_Mm2 SINE B2 -153 42 1 4 707 315 79 15 45 chr3 16018141 16018207 -143581576 + (TCTG)n Simple_repeat Simple_repeat 4 67 0 4 707 306 70 0 136 chr3 16018584 16018650 -143581133 + MMVL30-int LTR ERV1 772 828 -2870 4 707 456 252 48 87 chr3 16018721 16018951 -143580832 + MMVL30-int LTR ERV1 832 1052 -2646 4 707 595 200 114 20 chr3 16019245 16019455 -143580328 + MMVL30-int LTR ERV1 1301 1538 -6063 4 707 367 88 0 0 chr3 16019892 16019949 -143579834 + MMVL30-int LTR ERV1 1455 1511 -2187 4 707 354 45 0 0 chr3 16020054 16020098 -143579685 + (GA)n Simple_repeat Simple_repeat 1 44 0 4 707 225 228 34 34 chr3 16020170 16020229 -143579554 + B1F SINE Alu 1 59 -90 4 707 198 71 0 0 chr3 16020383 16020411 -143579372 + (TAAAA)n Simple_repeat Simple_repeat 2 29 0 4 707 883 151 30 12 chr3 16020415 16020583 -143579200 + MMVL30-int LTR ERV1 1612 1782 -1916 4 707 949 305 80 75 chr3 16020593 16021566 -143578217 + MuLV-int LTR ERV1 3864 4810 -2642 5 707 557 265 29 58 chr3 16022320 16022528 -143577255 + B3 SINE B2 2 203 -13 5 707 386 168 162 90 chr3 16022557 16022668 -143577115 - PB1D9 SINE Alu 0 120 2 5 707 241 164 40 2 chr3 16022707 16022763 -143577020 + B1_Mur2 SINE Alu 90 148 -1 5 707 410 304 0 5 chr3 16022844 16022967 -143576816 + B1F SINE Alu 1 120 0 5 707 290 228 271 45 chr3 16023140 16023273 -143576510 + RSINE1 SINE B4 3 165 0 5 707 761 178 14 7 chr3 16023567 16023714 -143576069 + B1_Mur4 SINE Alu 1 148 -2 5 707 279 258 15 15 chr3 16023917 16023984 -143575799 + ID SINE ID 12 78 -146 5 707 25 31 0 0 chr3 16023984 16024016 -143575767 + AT_rich Low_complexity Low_complexity 1 32 0 5 707 324 280 97 7 chr3 16024207 16024351 -143575432 + L1MA7 LINE L1 6099 6255 -36 5 707 1927 182 58 61 chr3 16024547 16024975 -143574808 - RLTR23 LTR ERV1 -2 428 2 6 707 2234 156 27 22 chr3 16025367 16025774 -143574009 - RLTR9E LTR ERVK 0 409 1 6 707 2201 146 45 5 chr3 16028235 16028633 -143571150 + MTC LTR MaLR 2 415 -6 6 707 360 0 0 0 chr3 16029090 16029130 -143570653 + (CA)n Simple_repeat Simple_repeat 2 41 0 6 707 217 333 27 0 chr3 16029317 16029392 -143570391 + B2_Mm2 SINE B2 50 126 -69 6 707 321 227 113 0 chr3 16029364 16029461 -143570322 + B3 SINE B2 109 216 0 6 707 288 0 0 0 chr3 16029999 16030031 -143569752 + (CA)n Simple_repeat Simple_repeat 2 33 0 6 707 192 200 96 96 chr3 16030728 16030811 -143568972 + MIRc SINE MIR 65 147 -121 6 707 739 156 44 0 chr3 16030889 16031024 -143568759 + B1_Mur4 SINE Alu 5 145 -5 6 707 537 178 120 9 chr3 16031035 16031130 -143568653 + PB1D9 SINE Alu 1 108 -12 6 707 393 22 0 0 chr3 16031130 16031176 -143568607 + (TAAAA)n Simple_repeat Simple_repeat 5 50 0 7 707 537 178 120 9 chr3 16031176 16031188 -143568595 + PB1D9 SINE Alu 109 120 0 6 707 261 0 0 0 chr3 16031270 16031299 -143568484 + (TTTA)n Simple_repeat Simple_repeat 4 32 0 7 707 386 301 88 16 chr3 16031355 16031480 -143568303 - RSINE1 SINE B4 -31 134 1 7 707 482 198 72 0 chr3 16031480 16031588 -143568195 + ID_B1 SINE B4 107 222 -2 7 707 235 245 284 14 chr3 16031592 16031733 -143568050 + ID_B1 SINE B4 36 214 -10 7 707 243 0 0 0 chr3 16031733 16031760 -143568023 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 7 707 235 323 146 0 chr3 16031802 16031898 -143567885 + PB1D9 SINE Alu 3 112 -8 7 707 369 0 0 0 chr3 16032669 16032710 -143567073 + (TC)n Simple_repeat Simple_repeat 2 42 0 7 707 426 20 0 0 chr3 16032710 16032760 -143567023 + (TG)n Simple_repeat Simple_repeat 2 52 0 7 707 593 229 58 19 chr3 16032802 16032958 -143566825 - RSINE1 SINE B4 -2 163 2 7 707 357 187 319 0 chr3 16033074 16033165 -143566618 - PB1D7 SINE Alu 0 120 1 8 707 293 276 70 20 chr3 16033639 16033739 -143566044 + B1F1 SINE Alu 1 105 -44 8 707 183 239 22 0 chr3 16034431 16034477 -143565306 + MIRm SINE MIR 105 151 -125 8 707 445 312 22 65 chr3 16035479 16035664 -143564119 + ID_B1 SINE B4 8 184 -40 8 707 466 221 53 9 chr3 16035774 16035888 -143563895 + RSINE1 SINE B4 3 121 -44 8 707 306 308 157 8 chr3 16036362 16036496 -143563287 + L1MD2 LINE L1 6192 6345 -14 8 707 1021 218 14 5 chr3 16037079 16037286 -143562497 + B3 SINE B2 8 216 0 8 707 857 283 82 15 chr3 16037383 16037652 -143562131 + B4A SINE B4 2 288 -4 8 707 246 156 0 0 chr3 16037672 16037717 -143562066 + (CA)n Simple_repeat Simple_repeat 1 45 0 8 707 1239 265 40 35 chr3 16037717 16038089 -143561694 - ORR1D1 LTR MaLR 0 374 1 8 707 1323 152 22 45 chr3 16039041 16039310 -143560473 - L1Md_F2 LINE L1 0 6582 6320 9 707 372 187 141 11 chr3 16039825 16039917 -143559866 + MTA_Mm LTR MaLR 3 106 -290 9 707 21658 123 64 56 chr3 16039958 16041264 -143558519 - L1_Mus2 LINE L1 -1 6565 5230 9 707 5434 30 0 0 chr3 16041264 16041889 -143557894 + L1Md_T LINE L1 5958 6582 0 9 707 21658 140 15 21 chr3 16041889 16041918 -143557865 - L1_Mm LINE L1 -654 5229 5229 9 707 1755 144 81 91 chr3 16041918 16042315 -143557468 + RLTR9C LTR ERVK 1 393 0 9 707 21658 140 15 21 chr3 16042315 16042593 -143557190 - L1_Mus2 LINE L1 -654 5229 4960 9 707 3786 97 6 0 chr3 16042593 16043110 -143556673 + L1_Mus1 LINE L1 6048 6567 0 9 707 21658 140 15 21 chr3 16043110 16043125 -143556658 - L1_Mus2 LINE L1 -924 4959 4952 9 707 1193 75 0 0 chr3 16043125 16043272 -143556511 + B1_Mm SINE Alu 1 147 0 9 707 21658 140 15 21 chr3 16043272 16043503 -143556280 - L1_Mus2 LINE L1 -932 4951 4729 9 707 198 0 0 0 chr3 16043503 16043525 -143556258 + (TTTTG)n Simple_repeat Simple_repeat 3 24 0 9 707 21658 140 15 21 chr3 16043525 16045995 -143553788 - L1_Mus2 LINE L1 -1155 4728 2242 9 707 11104 154 49 88 chr3 16045995 16046084 -143553699 + L1_Mur2 LINE L1 1832 1908 -3969 9 707 1028 59 66 7 chr3 16046084 16046221 -143553562 + B1_Mus2 SINE Alu 3 147 0 1 707 11104 154 49 88 chr3 16046221 16046421 -143553362 + L1_Mur2 LINE L1 1909 2060 -3817 9 707 195 42 0 0 chr3 16046421 16046445 -143553338 + (CCA)n Simple_repeat Simple_repeat 3 26 0 1 707 11104 154 49 88 chr3 16046445 16047434 -143552349 + L1_Mur2 LINE L1 2061 2999 -2878 9 707 742 99 359 7 chr3 16047434 16047576 -143552207 + B2_Mm2 SINE B2 2 193 -2 1 707 11104 154 49 88 chr3 16047576 16048930 -143550853 + L1_Mur2 LINE L1 3000 4364 -1513 9 707 905 172 0 6 chr3 16048939 16049109 -143550674 + L1_Mur2 LINE L1 4838 5006 -871 9 707 985 234 197 26 chr3 16049120 16049552 -143550231 + Lx4B LINE L1 6552 7057 -1 1 707 3940 230 91 15 chr3 16049533 16050561 -143549222 + Lx5 LINE L1 5945 7050 0 1 707 309 284 149 27 chr3 16050953 16051141 -143548642 + B3 SINE B2 1 211 -5 1 707 21 0 0 0 chr3 16051565 16051586 -143548197 + AT_rich Low_complexity Low_complexity 1 21 0 1 707 416 252 20 27 chr3 16051655 16051802 -143547981 + A-rich Low_complexity Low_complexity 3 148 0 1 707 204 97 0 0 chr3 16053119 16053150 -143546633 + (G)n Simple_repeat Simple_repeat 1 31 0 1 707 1078 98 23 0 chr3 16053667 16053840 -143545943 + (CATA)n Simple_repeat Simple_repeat 4 180 0 1 707 272 242 0 0 chr3 16054105 16054167 -143545616 - B3 SINE B2 -5 211 150 1 707 289 286 104 18 chr3 16054579 16054743 -143545040 - L1M4 LINE L1 -344 5840 5663 1 707 432 0 0 0 chr3 16055576 16055624 -143544159 + (TC)n Simple_repeat Simple_repeat 1 48 0 1 707 268 48 62 16 chr3 16055624 16055687 -143544096 + (CA)n Simple_repeat Simple_repeat 1 67 0 1 707 261 317 47 33 chr3 16056818 16056968 -143542815 + LTRIS2 LTR ERV1 360 511 -53 1 707 235 224 17 0 chr3 16057969 16058027 -143541756 + (TG)n Simple_repeat Simple_repeat 1 59 0 1 707 2416 52 10 1 chr3 16059002 16059326 -143540457 - MTA_Mm LTR MaLR -76 343 1 1 707 336 24 0 0 chr3 16059618 16059659 -143540124 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 707 279 0 0 0 chr3 16059659 16059689 -143540094 + (GA)n Simple_repeat Simple_repeat 2 32 0 1 707 2774 154 103 6 chr3 16059809 16060497 -143539286 - Lx2B LINE L1 -1011 5989 5246 1 707 2275 93 93 0 chr3 16060527 16060891 -143538892 - RLTR47_MM LTR ERV1 -134 398 1 1 707 281 29 0 0 chr3 16061963 16061998 -143537785 - RLTR1D LTR ERV1 0 605 571 1 707 462 36 0 0 chr3 16061998 16062054 -143537729 + (GA)n Simple_repeat Simple_repeat 1 56 0 1 707 301 47 0 0 chr3 16062054 16062097 -143537686 - RLTR1D LTR ERV1 -562 43 1 1 707 710 238 41 35 chr3 16062219 16062389 -143537394 + ORR1D1 LTR MaLR 1 171 -203 1 707 541 232 22 44 chr3 16062385 16062520 -143537263 - RLTR25B LTR ERVK -13 1015 884 1 707 527 197 106 197 chr3 16062495 16062855 -143536928 - RLTR25B LTR ERVK -255 773 447 1 707 816 241 37 44 chr3 16062674 16062969 -143536814 - ORR1A3-int LTR MaLR -1009 954 662 1 707 1247 192 57 36 chr3 16062863 16063111 -143536672 - MT2B LTR ERVL -314 287 35 1 707 692 211 176 118 chr3 16062937 16063216 -143536567 - ORR1A3-int LTR MaLR -1170 793 499 1 707 2493 218 13 62 chr3 16063139 16063688 -143536095 - RLTR25A LTR ERVK -580 523 2 1 707 738 278 118 4 chr3 16063910 16064181 -143535602 + Lx8 LINE L1 6473 6774 -699 1 707 3195 137 2 2 chr3 16064181 16064687 -143535096 + RLTR19C LTR ERVK 1 506 0 1 707 3497 177 89 34 chr3 16064688 16065548 -143534235 + RLTR19-int LTR ERVK 2 909 -5228 1 707 1097 258 118 23 chr3 16065549 16065898 -143533885 + RMER12 LTR ERVK 941 1322 0 1 707 2103 132 52 7 chr3 16065898 16066317 -143533466 + RLTR19-int LTR ERVK 914 1351 -4786 1 707 311 111 0 22 chr3 16066322 16066368 -143533415 - RLTR17 LTR ERVK -550 142 98 1 707 3290 185 60 46 chr3 16066373 16067279 -143532504 - RMER3D-int LTR ERVK 0 2842 1925 1 707 2791 184 45 86 chr3 16067283 16067393 -143532390 - RMER3D-int LTR ERVK -1048 1794 1703 1 707 1568 47 0 10 chr3 16067393 16067587 -143532196 - B2_Mm1t SINE B2 0 193 2 1 707 2791 194 40 79 chr3 16067587 16068490 -143531293 - RMER3D-int LTR ERVK -1140 1702 402 1 707 398 226 45 49 chr3 16068499 16068699 -143531084 - RMER3D-int LTR ERVK -1692 1150 1014 1 707 1022 249 67 52 chr3 16068698 16069159 -143530624 - RMER3D-int LTR ERVK -2372 470 3 1 707 1004 98 28 0 chr3 16069193 16069336 -143530447 + B1_Mus1 SINE Alu 2 148 0 1 707 219 69 0 0 chr3 16069336 16069365 -143530418 + (GAAAA)n Simple_repeat Simple_repeat 5 33 0 1 707 740 231 0 0 chr3 16069378 16069525 -143530258 - RLTR17 LTR ERVK -27 665 519 1 707 408 217 11 11 chr3 16069547 16069630 -143530153 - RLTR17 LTR ERVK -324 368 286 1 707 2921 155 209 26 chr3 16069630 16070372 -143529411 + RLTR13D2 LTR ERVK 1 1023 0 1 707 8096 144 83 84 chr3 16070451 16071585 -143528198 + RLTR19-int LTR ERVK 1340 2509 -3628 1 707 182 217 46 77 chr3 16071585 16071650 -143528133 - L4 LINE RTE -4 2025 1963 1 707 8096 144 83 84 chr3 16071650 16072419 -143527364 + RLTR19-int LTR ERVK 2510 3305 -2832 1 707 2973 171 156 21 chr3 16072391 16073431 -143526352 + RLTR19-int LTR ERVK 3413 4978 -1159 1 707 248 0 31 0 chr3 16073431 16073463 -143526320 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 1 707 1082 58 14 0 chr3 16073467 16073606 -143526177 - B1_Mus1 SINE Alu -7 141 1 1 707 2973 180 75 106 chr3 16073606 16074232 -143525551 + RLTR19-int LTR ERVK 4979 5598 -539 1 707 422 316 0 0 chr3 16075072 16075205 -143524578 + RLTR4_MM-int LTR ERV1 7143 7275 -326 1 707 3155 113 34 20 chr3 16075494 16075991 -143523792 + RLTR19C LTR ERVK 1 504 -2 1 707 965 303 33 16 chr3 16075993 16076298 -143523485 + Lx8 LINE L1 6770 7079 -394 1 707 246 279 45 105 chr3 16076299 16076499 -143523284 + Lx8 LINE L1 7282 7469 -4 1 707 1294 312 73 34 chr3 16076589 16077180 -143522603 - MER82 DNA MER2_type -16 637 24 1 707 292 289 16 8 chr3 16077285 16077407 -143522376 - L1MC5 LINE L1 -59 7902 7780 1 707 236 30 0 29 chr3 16077716 16077750 -143522033 + (TTGGGG)n Simple_repeat Simple_repeat 3 35 0 1 707 2359 179 22 14 chr3 16077888 16078303 -143521480 - MTC LTR MaLR -3 418 1 1 707 372 266 74 38 chr3 16078923 16079043 -143520740 + PB1D10 SINE Alu 11 133 -17 1 707 1136 279 28 18 chr3 16079999 16080386 -143519397 - RLTR22_Mur LTR ERVK -1043 805 415 1 707 385 200 67 39 chr3 16080443 16080547 -143519236 + RLTR23 LTR ERV1 324 430 0 1 707 475 274 48 9 chr3 16080547 16080795 -143518988 + L1MD3 LINE L1 7504 7980 -15 1 707 400 370 76 60 chr3 16081349 16081599 -143518184 + MLT1J LTR MaLR 44 297 -215 1 707 495 323 30 0 chr3 16081637 16081770 -143518013 - RSINE1 SINE B4 -28 137 1 1 707 629 105 17 1 chr3 16081794 16081901 -143517882 + B1_Mus1 SINE Alu 1 114 -6 1 707 574 179 132 0 chr3 16081916 16082022 -143517761 - B1_Mur2 SINE Alu -28 121 2 1 707 279 316 50 20 chr3 16081933 16082033 -143517750 - MT2B LTR ERVL -344 257 155 1 707 311 316 88 0 chr3 16082176 16082290 -143517493 - MIRb SINE MIR -116 152 29 1 707 186 43 0 0 chr3 16083450 16083473 -143516310 + (CGG)n Simple_repeat Simple_repeat 2 24 0 1 707 24 0 0 0 chr3 16083714 16083738 -143516045 + GC_rich Low_complexity Low_complexity 1 24 0 1 707 300 297 116 85 chr3 16086865 16087064 -143512719 - MIRb SINE MIR -40 228 24 1 707 25 75 0 0 chr3 16088366 16088419 -143511364 + AT_rich Low_complexity Low_complexity 1 53 0 1 707 239 329 101 0 chr3 16088963 16089042 -143510741 + PB1D10 SINE Alu 2 88 -29 1 707 453 243 14 13 chr3 16091105 16091209 -143508574 - B3A SINE B2 -110 106 2 1 707 1219 54 0 0 chr3 16092966 16093113 -143506670 - B1_Mm SINE Alu 0 147 1 1 707 383 194 115 4 chr3 16093372 16093486 -143506297 - PB1D9 SINE Alu -7 141 17 1 707 649 254 7 7 chr3 16093762 16093905 -143505878 - B1_Mur2 SINE Alu -6 143 1 1 707 1114 55 21 0 chr3 16093931 16094076 -143505707 - B1_Mus1 SINE Alu 0 148 1 1 707 23 68 0 0 chr3 16094286 16094330 -143505453 + AT_rich Low_complexity Low_complexity 1 44 0 1 707 29 47 0 0 chr3 16094794 16094837 -143504946 + AT_rich Low_complexity Low_complexity 1 43 0 1 707 25 51 0 0 chr3 16095115 16095154 -143504629 + AT_rich Low_complexity Low_complexity 1 39 0 1 707 405 0 0 0 chr3 16095700 16095745 -143504038 + (TG)n Simple_repeat Simple_repeat 1 45 0 1 707 240 35 0 0 chr3 16095747 16095776 -143504007 + (GA)n Simple_repeat Simple_repeat 2 30 0 1 707 722 131 214 0 chr3 16095807 16095952 -143503831 - B2_Mm2 SINE B2 -18 177 2 1 707 1346 53 0 0 chr3 16096300 16096470 -143503313 + B2_Mm1a SINE B2 2 171 -22 1 707 212 0 0 35 chr3 16096476 16096505 -143503278 + (TAAA)n Simple_repeat Simple_repeat 2 29 0 1 707 1273 275 40 43 chr3 16096724 16097123 -143502660 - Lx6 LINE L1 -173 7287 6890 1 707 588 140 0 0 chr3 16097126 16097233 -143502550 + (TCCC)n Simple_repeat Simple_repeat 4 110 0 1 707 4569 198 71 80 chr3 16097233 16098144 -143501639 - Lx6 LINE L1 -579 6881 6029 1 707 4220 125 35 140 chr3 16098144 16099157 -143500626 - RMER17A2 LTR ERVK 0 906 1 1 707 6893 170 75 23 chr3 16099157 16100921 -143498862 - Lx6 LINE L1 -1432 6028 4173 1 707 1137 179 30 11 chr3 16100952 16101223 -143498560 - Lx6 LINE L1 -6611 1117 842 1 707 640 292 141 17 chr3 16101231 16101614 -143498169 - Lx6 LINE L1 -7042 686 211 1 707 285 286 84 19 chr3 16101853 16101960 -143497823 + ID_B1 SINE B4 109 222 -2 1 707 240 354 13 0 chr3 16102087 16102166 -143497617 + (CA)n Simple_repeat Simple_repeat 1 80 0 1 707 1438 271 228 45 chr3 16102396 16103150 -143496633 - Lx8 LINE L1 -348 7125 6234 1 707 21 36 0 0 chr3 16103150 16103178 -143496605 + AT_rich Low_complexity Low_complexity 1 28 0 1 707 21 57 0 0 chr3 16106816 16106851 -143492932 + AT_rich Low_complexity Low_complexity 1 35 0 1 707 22 35 0 0 chr3 16106945 16106974 -143492809 + AT_rich Low_complexity Low_complexity 1 29 0 1 707 249 281 18 0 chr3 16107669 16107726 -143492057 + ID_B1 SINE B4 81 138 -86 1 707 390 221 200 0 chr3 16107680 16107775 -143492008 + B1_Mm SINE Alu 12 125 -22 1 707 189 195 0 0 chr3 16107795 16107836 -143491947 + (CATATA)n Simple_repeat Simple_repeat 3 43 0 1 707 462 275 114 19 chr3 16108796 16108816 -143490967 + CYRA11_Mm Unknown Y-chromosome 160 388 -227 1 707 1027 138 153 0 chr3 16108816 16109005 -143490778 - URR1A DNA MER1_type -8 218 1 1 707 189 267 197 13 chr3 16109511 16109587 -143490196 - MIRm SINE MIR -88 188 99 1 707 775 235 51 5 chr3 16109768 16109965 -143489818 - B3 SINE B2 -10 206 1 1 707 183 129 0 0 chr3 16110051 16110082 -143489701 + (TC)n Simple_repeat Simple_repeat 2 32 0 1 707 427 355 112 84 chr3 16110398 16110613 -143489170 + ID_B1 SINE B4 3 223 -1 1 707 345 370 83 19 chr3 16110724 16110881 -143488902 - MLT1F2 LTR MaLR -393 167 1 1 707 22 56 0 0 chr3 16110963 16110999 -143488784 + AT_rich Low_complexity Low_complexity 1 36 0 1 707 363 167 0 0 chr3 16111027 16111093 -143488690 + (TATG)n Simple_repeat Simple_repeat 2 67 0 1 707 550 172 81 0 chr3 16111093 16111192 -143488591 + B3 SINE B2 3 109 -107 1 707 369 0 0 0 chr3 16111561 16111602 -143488181 + (TG)n Simple_repeat Simple_repeat 2 42 0 2 707 250 299 84 10 chr3 16111638 16111725 -143488058 - PB1D10 SINE Alu -15 105 16 2 707 23 86 0 0 chr3 16111854 16111912 -143487871 + AT_rich Low_complexity Low_complexity 1 58 0 2 707 231 36 0 0 chr3 16112593 16112621 -143487162 + (TA)n Simple_repeat Simple_repeat 1 28 0 2 707 225 140 40 0 chr3 16112640 16112690 -143487093 + (CA)n Simple_repeat Simple_repeat 1 52 0 2 707 362 231 117 114 chr3 16112975 16113239 -143486544 - L1MEe LINE L1 -3845 1009 745 2 707 28 0 0 0 chr3 16115422 16115450 -143484333 + AT_rich Low_complexity Low_complexity 1 28 0 2 707 24 53 0 0 chr3 16116316 16116354 -143483429 + AT_rich Low_complexity Low_complexity 1 38 0 2 707 33 0 0 0 chr3 16117239 16117272 -143482511 + AT_rich Low_complexity Low_complexity 1 33 0 2 707 447 256 235 9 chr3 16118630 16118945 -143480838 - L1MC3 LINE L1 -198 7587 7202 2 707 305 329 97 39 chr3 16119060 16119215 -143480568 + MTEa LTR MaLR 20 183 -196 2 707 1600 68 9 5 chr3 16119249 16119472 -143480311 - L1_Mus4 LINE L1 -245 6391 6168 2 707 337 247 283 13 chr3 16120938 16121168 -143478615 + Tigger13a DNA MER2_type 304 595 -176 2 707 342 36 54 0 chr3 16121243 16121299 -143478484 + (TC)n Simple_repeat Simple_repeat 1 59 0 2 707 1005 68 68 0 chr3 16121299 16121432 -143478351 - B1_Mus1 SINE Alu -5 143 2 2 708 207 0 0 0 chr3 16121927 16121950 -143477833 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 2 708 236 176 66 0 chr3 16122136 16122227 -143477556 + (TA)n Simple_repeat Simple_repeat 1 97 0 2 708 790 234 81 137 chr3 16122232 16122673 -143477110 - MT2B2 LTR ERVL -41 543 8 2 708 290 256 179 16 chr3 16122942 16123065 -143476718 - Charlie1b DNA MER1_type -9 514 372 2 708 201 39 0 0 chr3 16124104 16124130 -143475653 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 2 708 303 28 0 0 chr3 16124549 16124585 -143475198 + (TG)n Simple_repeat Simple_repeat 1 36 0 2 708 242 319 129 29 chr3 16124659 16124798 -143474985 - B4A SINE B4 -97 195 43 2 708 1392 142 92 68 chr3 16125358 16125758 -143474025 + RMER17C LTR ERVK 1 410 0 2 708 283 209 43 29 chr3 16125759 16125828 -143473955 + RMER17C-int LTR ERVK 2 71 -3167 2 708 333 297 143 9 chr3 16126137 16126249 -143473534 - RSINE1 SINE B4 0 165 39 2 708 195 281 225 21 chr3 16127742 16127884 -143471899 - MIR SINE MIR -55 207 37 2 708 293 245 29 48 chr3 16127918 16128043 -143471740 - MTEa LTR MaLR -19 360 226 2 708 286 333 40 40 chr3 16128089 16128239 -143471544 - Lx8 LINE L1 -159 7314 7165 2 708 417 340 76 27 chr3 16128244 16128468 -143471315 - Lx8 LINE L1 -275 7198 6964 2 708 598 244 66 36 chr3 16128498 16128664 -143471119 - Lx8 LINE L1 -554 6919 6749 2 708 428 261 235 30 chr3 16128729 16128895 -143470888 + MT2A LTR ERVL 266 465 -68 2 708 712 287 168 15 chr3 16128922 16129262 -143470521 - Lx8 LINE L1 -752 6721 6330 2 708 307 274 62 10 chr3 16129434 16129530 -143470253 + MTE2b LTR MaLR 1 101 -278 2 708 308 256 49 0 chr3 16129540 16129622 -143470161 - B3 SINE B2 -6 210 125 2 708 2820 182 199 43 chr3 16129629 16130376 -143469407 - RMER19B LTR ERVK -38 864 1 2 708 423 335 34 28 chr3 16130377 16130555 -143469228 - RMER4A LTR ERVK -32 434 256 2 708 260 259 19 0 chr3 16130572 16130626 -143469157 - MYSERV-int LTR ERVK -1432 5118 5064 2 708 1115 96 17 0 chr3 16130632 16130809 -143468974 - Lx2 LINE L1 -719 6278 6099 2 708 4724 108 13 11 chr3 16130809 16131523 -143468260 + Lx2 LINE L1 6282 6996 -1 2 708 268 297 68 0 chr3 16131554 16131628 -143468155 - MYSERV-int LTR ERVK -1514 5036 4958 2 708 2008 165 136 78 chr3 16131630 16132182 -143467601 - RLTR6_Mm LTR ERV1 -70 584 1 2 708 58483 36 13 0 chr3 16132182 16139749 -143460034 - RLTR6-int LTR ERV1 0 7778 1 2 708 1252 170 84 94 chr3 16139750 16140301 -143459482 - RLTR6_Mm LTR ERV1 -51 603 1 2 708 589 147 10 21 chr3 16140301 16140393 -143459390 - RMER19B LTR ERVK -324 578 488 2 708 264 190 69 0 chr3 16140421 16140479 -143459304 - MYSERV-int LTR ERVK -1592 4958 4897 2 708 773 227 70 22 chr3 16140913 16141143 -143458640 - RLTR15 LTR ERVK -118 241 1 2 708 21 36 0 0 chr3 16141465 16141493 -143458290 + AT_rich Low_complexity Low_complexity 1 28 0 2 708 309 118 0 0 chr3 16141625 16141676 -143458107 - MusHAL1 LINE L1 -1327 1385 1335 2 708 16020 166 31 7 chr3 16141675 16145591 -143454192 + L1VL4 LINE L1 563 4574 -1309 2 708 410 302 14 54 chr3 16145698 16145845 -143453938 - B3 SINE B2 0 216 76 2 708 2160 208 37 88 chr3 16145851 16146442 -143453341 + RLTR31_Mm LTR ERVK 1 561 0 2 708 408 206 14 0 chr3 16146442 16146515 -143453268 - B3 SINE B2 -141 75 2 2 708 309 352 138 24 chr3 16146698 16146951 -143452832 - L1M5 LINE L1 -465 5775 5494 2 708 535 319 127 0 chr3 16147260 16147489 -143452294 - MTE2b LTR MaLR -5 374 117 2 708 4649 62 24 31 chr3 16148257 16148894 -143450889 + L1_Mus2 LINE L1 5931 6562 -4 2 708 285 286 113 26 chr3 16149287 16149438 -143450345 - MER115 DNA Tip100 0 693 530 2 708 2077 214 59 37 chr3 16149456 16149885 -143449898 - RMER5 LTR ERV1 0 534 98 2 708 2731 71 143 139 chr3 16149885 16150395 -143449388 + RLTR1B LTR ERV1 1 512 0 2 708 2077 214 59 37 chr3 16150395 16150475 -143449308 - RMER5 LTR ERV1 -437 97 14 2 708 342 0 0 0 chr3 16150626 16150664 -143449119 + (TG)n Simple_repeat Simple_repeat 2 39 0 2 708 4661 132 31 41 chr3 16150671 16151569 -143448214 - RMER17D LTR ERVK 0 889 1 2 708 2482 116 27 32 chr3 16152475 16152886 -143446897 - RLTR9E LTR ERVK 0 409 1 2 708 490 92 0 26 chr3 16152886 16152964 -143446819 - ETnERV2-int LTR ERVK 0 7406 7331 2 708 16384 201 28 26 chr3 16153174 16158939 -143440844 - ETnERV2-int LTR ERVK -977 6429 4 2 708 2057 127 58 12 chr3 16158942 16159069 -143440714 - RLTR9E LTR ERVK 0 403 250 2 708 279 0 0 0 chr3 16159069 16159100 -143440683 + (TG)n Simple_repeat Simple_repeat 1 31 0 2 708 207 0 0 0 chr3 16159100 16159123 -143440660 + (GGGTG)n Simple_repeat Simple_repeat 3 25 0 2 708 2057 103 36 6 chr3 16159123 16159368 -143440415 - RLTR9E LTR ERVK -160 249 3 2 708 235 331 119 0 chr3 16159631 16159782 -143440001 - MER5A DNA MER1_type -13 176 8 2 708 381 278 99 33 chr3 16159821 16160003 -143439780 + MIR SINE MIR 53 246 -16 2 708 2852 88 7 12 chr3 16160247 16160651 -143439132 - RLTR9D LTR ERVK -1 402 1 2 708 393 143 0 14 chr3 16160654 16160725 -143439058 - ETnERV2-int LTR ERVK -6 7400 7331 2 708 1037 178 72 27 chr3 16160938 16161307 -143438476 - ETnERV2-int LTR ERVK -981 6425 6096 2 708 10336 189 93 62 chr3 16161312 16163901 -143435882 - ETnERV2-int LTR ERVK -1153 4655 2254 2 708 192 320 51 51 chr3 16163901 16163980 -143435803 + L4 LINE RTE 1010 1088 -941 2 708 10336 189 93 62 chr3 16163980 16165254 -143434529 - ETnERV2-int LTR ERVK -1153 2253 1071 2 708 781 273 37 63 chr3 16165257 16165640 -143434143 - ETnERV2-int LTR ERVK -2915 399 27 2 708 2738 107 23 5 chr3 16165667 16166063 -143433720 - RLTR9D LTR ERVK 0 403 1 2 708 190 372 49 35 chr3 16166847 16166989 -143432794 + L2 LINE L2 2704 2847 -572 2 708 401 255 64 101 chr3 16167152 16167370 -143432413 + B3 SINE B2 1 210 -6 2 708 308 309 17 86 chr3 16167932 16168049 -143431734 - Tigger5 DNA MER2_type -2253 153 45 2 708 267 31 0 0 chr3 16168049 16168081 -143431702 + (TA)n Simple_repeat Simple_repeat 1 32 0 2 708 2311 198 40 139 chr3 16168099 16169327 -143430456 + L1Md_F LINE L1 123 1240 -5301 2 708 2088 126 0 0 chr3 16169325 16169675 -143430108 + MusHAL1 LINE L1 1059 1408 -1304 2 708 2248 147 22 0 chr3 16169674 16170076 -143429707 - L1_Mm LINE L1 -2003 3880 3470 2 708 30921 99 11 9 chr3 16170093 16176266 -143423517 - L1Md_F2 LINE L1 -15 6567 380 2 708 300 278 52 0 chr3 16176273 16176388 -143423395 - L1M5 LINE L1 -752 5442 5322 2 708 649 241 0 8 chr3 16176866 16177000 -143422783 - B1_Mur1 SINE Alu 0 149 17 2 708 21 0 0 0 chr3 16177042 16177063 -143422720 + AT_rich Low_complexity Low_complexity 1 21 0 2 708 2504 188 31 72 chr3 16177399 16178036 -143421747 + RMER19C LTR ERVK 1 611 0 2 708 266 269 104 0 chr3 16178054 16178121 -143421662 + ID_B1 SINE B4 69 142 -82 2 708 429 210 12 0 chr3 16178064 16178145 -143421638 + B1_Mur4 SINE Alu 6 87 -63 2 708 2480 213 61 95 chr3 16178153 16178551 -143421232 - Lx5 LINE L1 -818 6232 5792 2 708 189 0 0 0 chr3 16178551 16178572 -143421211 + (TTTTC)n Simple_repeat Simple_repeat 4 24 0 2 708 2480 212 10 82 chr3 16178572 16178621 -143421162 - L1_Mur3 LINE L1 -89 5791 5791 2 708 1030 113 7 0 chr3 16178621 16178762 -143421021 - B1_Mus1 SINE Alu -6 142 1 2 708 2485 209 12 9 chr3 16178762 16179353 -143420430 - Lx5 LINE L1 -89 5791 5201 2 708 4101 174 43 17 chr3 16179501 16180237 -143419546 - Lx5 LINE L1 -1256 4621 3854 2 708 1353 75 5 36 chr3 16180237 16180430 -143419353 - B2_Mm1a SINE B2 -6 187 1 2 708 4101 174 43 17 chr3 16180430 16180637 -143419146 - Lx5 LINE L1 -2024 3853 3653 2 708 2250 80 0 0 chr3 16180644 16180946 -143418837 - L1_Mus1 LINE L1 0 6567 6266 2 708 391 105 0 0 chr3 16180946 16181003 -143418780 - L1_Mus1 LINE L1 -427 6140 6084 2 708 269 208 41 14 chr3 16181004 16181077 -143418706 - Lx5 LINE L1 -2222 3655 3581 2 708 3294 163 36 72 chr3 16181077 16181328 -143418455 - RMER6A LTR ERVK 0 756 500 2 708 1144 91 17 0 chr3 16181328 16181503 -143418280 + (TCTCCC)n Simple_repeat Simple_repeat 1 178 0 2 708 3294 163 36 72 chr3 16181503 16182030 -143417753 - RMER6A LTR ERVK -257 499 6 2 708 6624 193 99 86 chr3 16182034 16182559 -143417224 - Lx5 LINE L1 -2290 3587 2958 2 708 246 212 80 34 chr3 16182559 16182647 -143417136 + RLTR13C2 LTR ERVK 153 244 -564 2 708 6624 193 99 86 chr3 16182647 16182969 -143416814 - Lx5 LINE L1 -2290 2957 2570 2 708 1331 105 11 0 chr3 16182969 16183160 -143416623 - B2_Mm1t SINE B2 0 193 1 2 708 6624 193 99 86 chr3 16183160 16183669 -143416114 - Lx5 LINE L1 -3308 2569 2081 2 708 191 36 36 0 chr3 16183669 16183697 -143416086 + (TTG)n Simple_repeat Simple_repeat 1 29 0 2 708 6624 193 99 86 chr3 16183697 16184131 -143415652 - Lx5 LINE L1 -3797 2080 1677 2 708 1012 109 0 39 chr3 16184131 16184284 -143415499 - B1_Mus1 SINE Alu 0 148 2 2 708 6624 190 97 71 chr3 16184284 16184797 -143414986 - Lx5 LINE L1 -4201 1676 1153 2 708 32684 68 3 2 chr3 16184831 16190040 -143409743 + L1Md_F3 LINE L1 413 5586 -297 2 708 7927 49 1 3 chr3 16190041 16191028 -143408755 + L1Md_F3 LINE L1 5588 6572 -12 2 708 463 189 0 10 chr3 16191030 16191126 -143408657 + L1_Mur2 LINE L1 2141 2235 -3642 2 708 279 310 142 29 chr3 16191185 16191431 -143408352 - MYSERV-int LTR ERVK -59 3179 2906 2 708 276 30 0 0 chr3 16191443 16191476 -143408307 + (CA)n Simple_repeat Simple_repeat 2 34 0 2 708 557 272 32 16 chr3 16191490 16191677 -143408106 - MYSERV-int LTR ERVK -769 5781 5626 2 708 6343 52 24 0 chr3 16192208 16192997 -143406786 - RLTR13C2 LTR ERVK 0 808 1 2 708 307 290 73 95 chr3 16193108 16193287 -143406496 - MLT1J2 LTR MaLR -200 248 74 2 708 231 295 49 49 chr3 16193856 16193938 -143405845 - RSINE1 SINE B4 -8 157 76 2 708 243 371 51 8 chr3 16194034 16194151 -143405632 - B4 SINE B4 -169 123 2 2 708 598 52 41 0 chr3 16194847 16194944 -143404839 + (TCTA)n Simple_repeat Simple_repeat 4 104 0 2 708 198 393 53 18 chr3 16195358 16195472 -143404311 - L2b LINE L2 -34 3341 3224 2 708 2566 108 77 0 chr3 16195546 16195963 -143403820 - RLTR47_MM LTR ERV1 -83 449 1 2 708 858 302 45 24 chr3 16195963 16196425 -143403358 - MuRRS4-int LTR ERV1 -42 5021 4550 2 708 552 219 44 0 chr3 16196471 16196585 -143403198 + ETnERV2-int LTR ERVK 7070 7188 -218 2 708 340 311 11 16 chr3 16197166 16197349 -143402434 + RMER16-int LTR ERVK 185 366 -6878 2 708 567 0 0 0 chr3 16197493 16197556 -143402227 + (GA)n Simple_repeat Simple_repeat 1 63 0 2 708 1691 169 123 13 chr3 16197556 16198054 -143401729 + RMER16-int LTR ERVK 192 670 -4736 2 708 535 147 128 0 chr3 16198057 16198166 -143401617 + RMER16-int LTR ERVK 938 1060 -5077 2 708 7433 140 49 71 chr3 16198181 16199951 -143399832 + ETnERV2-int LTR ERVK 2935 4382 -3024 3 708 1812 298 36 46 chr3 16200066 16201376 -143398407 - MuRRS4-int LTR ERV1 -2298 5308 3532 3 708 1024 326 78 33 chr3 16201468 16202711 -143397072 - MuRRS4-int LTR ERV1 -5191 2415 1040 3 708 360 327 65 40 chr3 16203073 16203350 -143396433 - MuRRS4-int LTR ERV1 -6747 809 526 3 708 554 161 136 0 chr3 16203760 16203878 -143395905 - RLTR47_MM LTR ERV1 0 532 399 3 708 4040 181 3 31 chr3 16203882 16204432 -143395351 - L1_Mur2 LINE L1 -481 5396 4864 3 708 222 105 0 0 chr3 16204432 16204470 -143395313 + (TTG)n Simple_repeat Simple_repeat 2 39 0 3 708 4040 181 3 31 chr3 16204470 16204824 -143394959 - L1_Mur2 LINE L1 -1014 4863 4518 3 708 264 154 0 0 chr3 16204825 16204877 -143394906 + (TA)n Simple_repeat Simple_repeat 2 53 0 3 708 597 28 0 0 chr3 16205032 16205103 -143394680 + (GA)n Simple_repeat Simple_repeat 2 72 0 3 708 4805 146 9 21 chr3 16205185 16206116 -143393667 + L1MA4A LINE L1 5008 5959 -344 3 708 29 28 0 0 chr3 16206152 16206188 -143393595 + AT_rich Low_complexity Low_complexity 1 36 0 3 708 348 370 35 9 chr3 16207093 16207319 -143392464 - MIRb SINE MIR -29 239 3 3 708 667 76 0 0 chr3 16207446 16207538 -143392245 - L1VL2 LINE L1 -5675 660 569 3 708 12520 98 12 12 chr3 16207598 16210300 -143389483 + L1VL2 LINE L1 283 2982 -633 3 708 23 0 0 0 chr3 16210303 16210326 -143389457 + AT_rich Low_complexity Low_complexity 1 23 0 3 708 22 56 0 0 chr3 16210621 16210657 -143389126 + AT_rich Low_complexity Low_complexity 1 36 0 3 708 26 88 0 0 chr3 16210849 16210917 -143388866 + AT_rich Low_complexity Low_complexity 1 68 0 3 708 627 144 25 0 chr3 16211450 16211568 -143388215 + URR1B DNA MER1_type 105 225 0 3 708 291 234 61 30 chr3 16211568 16211582 -143388201 - CYRA11_Mm Unknown Y-chromosome -325 292 157 3 708 383 351 68 15 chr3 16211613 16211818 -143387965 - B3 SINE B2 0 216 1 3 708 190 89 0 62 chr3 16212384 16212432 -143387351 + A-rich Low_complexity Low_complexity 4 48 0 3 708 326 214 374 25 chr3 16213016 16213169 -143386614 - B3 SINE B2 0 216 10 3 708 449 347 27 34 chr3 16213476 16213625 -143386158 - B1_Mur1 SINE Alu -1 148 1 3 708 23 0 0 0 chr3 16213807 16213830 -143385953 + AT_rich Low_complexity Low_complexity 1 23 0 3 708 905 351 7 0 chr3 16214025 16214296 -143385487 + B4A SINE B4 2 274 -18 3 708 444 19 0 0 chr3 16214336 16214389 -143385394 + (CA)n Simple_repeat Simple_repeat 1 53 0 3 708 395 380 48 34 chr3 16214611 16214818 -143384965 - L1MB5 LINE L1 -75 6099 5890 3 708 587 290 40 40 chr3 16214871 16215144 -143384639 + Lx8 LINE L1 6882 7154 -319 3 708 1809 111 0 11 chr3 16215305 16215569 -143384214 + RLTR9E LTR ERVK 1 261 -148 3 708 15019 51 2 1 chr3 16215572 16218274 -143381509 - L1Md_F3 LINE L1 -2 6582 3879 3 708 12631 69 4 11 chr3 16218272 16219199 -143380584 - L1Md_F3 LINE L1 -2843 3040 2118 3 708 1626 32 0 0 chr3 16219199 16219388 -143380395 + B2_Mm1a SINE B2 1 189 -4 3 708 12631 112 6 20 chr3 16219388 16221089 -143378694 - L1Md_F3 LINE L1 -3766 2117 446 3 708 628 193 9 69 chr3 16221090 16221292 -143378491 + RLTR9E LTR ERVK 226 409 0 3 708 634 235 15 62 chr3 16221294 16221557 -143378226 + MMETn-int LTR ERVK 2 317 -2997 3 708 335 156 0 15 chr3 16221606 16221671 -143378112 + RLTR45-int LTR ERVK 2086 2149 -5095 3 708 262 125 0 0 chr3 16222113 16222161 -143377622 + RMER16-int LTR ERVK 141 188 -5218 3 708 1799 175 94 17 chr3 16222146 16222616 -143377167 + ETnERV2-int LTR ERVK 1590 2095 -5311 3 708 553 289 5 37 chr3 16222607 16222794 -143376989 + ETnERV2-int LTR ERVK 2428 2608 -4798 3 708 20868 116 27 19 chr3 16222794 16225440 -143374343 + ETnERV2-int LTR ERVK 3055 5778 -1628 3 708 243 0 0 0 chr3 16225440 16225467 -143374316 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 3 708 20868 116 27 19 chr3 16225467 16226159 -143373624 + ETnERV2-int LTR ERVK 5779 6422 -984 3 708 472 96 0 14 chr3 16226374 16226448 -143373335 + ETnERV2-int LTR ERVK 7331 7403 -3 3 708 2093 152 29 32 chr3 16226450 16226859 -143372924 + RLTR9E LTR ERVK 1 408 -1 3 708 267 31 0 0 chr3 16226867 16226899 -143372884 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 3 708 213 108 0 0 chr3 16227036 16227073 -143372710 + (TCTG)n Simple_repeat Simple_repeat 2 38 0 3 708 328 305 92 8 chr3 16227075 16227194 -143372589 - B1_Mur1 SINE Alu -20 129 1 3 708 405 276 74 35 chr3 16227302 16227531 -143372252 + L1MB7 LINE L1 5900 6137 -47 3 708 24 32 0 0 chr3 16227896 16227927 -143371856 + AT_rich Low_complexity Low_complexity 1 31 0 3 708 307 194 0 63 chr3 16227928 16228017 -143371766 - PB1D10 SINE Alu 0 127 32 3 708 4989 30 17 0 chr3 16228178 16228771 -143371012 - L1Md_F3 LINE L1 -13 6571 5969 3 708 24 32 0 0 chr3 16229879 16229910 -143369873 + AT_rich Low_complexity Low_complexity 1 31 0 3 708 939 342 29 60 chr3 16230115 16230628 -143369155 + RLTR17 LTR ERVK 125 621 -71 3 708 312 191 32 0 chr3 16230599 16230662 -143369121 + RLTR31_Mur LTR ERVK 489 553 0 3 708 1759 138 7 28 chr3 16230662 16230952 -143368831 - ORR1A3 LTR MaLR -42 284 1 3 708 9356 156 55 75 chr3 16230952 16232954 -143366829 - ORR1A3-int LTR MaLR 0 1963 1 3 708 884 168 18 22 chr3 16232958 16233228 -143366555 - ORR1A3 LTR MaLR -8 318 14 3 708 1943 165 148 116 chr3 16233527 16234027 -143365756 - RMER20A LTR ERVK 0 516 1 3 708 211 346 93 31 chr3 16234033 16234227 -143365556 - MIRb SINE MIR -8 260 55 3 708 258 172 0 30 chr3 16234666 16234732 -143365051 + (TTTG)n Simple_repeat Simple_repeat 1 64 0 3 708 372 321 17 26 chr3 16234737 16234852 -143364931 - PB1D10 SINE Alu -2 115 2 3 708 2385 187 28 6 chr3 16236281 16236782 -143363001 - Lx LINE L1 -16 6638 6127 3 708 2796 121 18 2 chr3 16236784 16237354 -143362429 - Lx LINE L1 -665 5989 5413 3 708 617 184 31 75 chr3 16237364 16237428 -143362355 - B1_Mus1 SINE Alu -1 148 89 3 708 1305 83 0 0 chr3 16237428 16237608 -143362175 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 3 708 617 84 21 10 chr3 16237608 16237696 -143362087 - B1_Mus1 SINE Alu -60 88 1 3 708 14795 64 3 0 chr3 16237725 16240472 -143359311 - L1Md_F2 LINE L1 -13 6569 3818 3 708 696 358 8 49 chr3 16240513 16240760 -143359023 - B4A SINE B4 -2 290 54 3 708 3795 232 58 28 chr3 16240888 16241866 -143357917 - RMER1A Other Other -21 1009 2 3 708 314 301 0 0 chr3 16241953 16242036 -143357747 - RMER1A Other Other -647 383 301 3 708 1278 320 50 0 chr3 16242010 16242413 -143357370 - RMER1B Other Other -640 426 4 3 708 216 0 0 0 chr3 16242721 16242745 -143357038 + (CCCTAA)n Simple_repeat Simple_repeat 3 26 0 3 708 490 130 0 0 chr3 16242745 16242822 -143356961 - L1_Mur1 LINE L1 -2090 3796 3720 3 708 246 62 0 0 chr3 16242836 16242868 -143356915 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 3 708 4656 130 16 22 chr3 16242868 16243320 -143356463 - Lx3A LINE L1 -12 6969 6519 3 708 215 31 0 30 chr3 16243320 16243353 -143356430 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 3 708 1100 65 14 0 chr3 16243353 16243492 -143356291 - B1_Mur4 SINE Alu -9 141 1 3 708 4656 130 16 22 chr3 16243492 16243721 -143356062 - Lx3A LINE L1 -463 6518 6288 3 708 2958 83 5 2 chr3 16243721 16244120 -143355663 - MTB LTR MaLR 0 400 1 3 708 4656 130 16 22 chr3 16244120 16244206 -143355577 - Lx3A LINE L1 -694 6287 6206 3 708 795 101 7 0 chr3 16244210 16244348 -143355435 - MusHAL1 LINE L1 -2675 679 541 3 708 1523 153 30 4 chr3 16244358 16244621 -143355162 - L1VL2 LINE L1 -5766 569 300 3 708 657 225 104 36 chr3 16244621 16244842 -143354941 - L1VL2 LINE L1 -5938 397 162 3 708 1906 144 41 3 chr3 16244958 16245298 -143354485 + Lx LINE L1 6268 6620 -34 3 708 233 269 9 5 chr3 16245303 16245377 -143354406 - B2_Mm2 SINE B2 -140 76 2 3 708 296 362 54 0 chr3 16246020 16246146 -143353637 - MER74A LTR ERVL -390 232 42 3 708 434 18 18 0 chr3 16246155 16246210 -143353573 + (CA)n Simple_repeat Simple_repeat 2 57 0 3 708 387 0 0 0 chr3 16246211 16246254 -143353529 + (TC)n Simple_repeat Simple_repeat 1 43 0 3 708 2123 96 88 17 chr3 16246254 16246605 -143353178 - RLTR10A LTR ERVK -29 382 7 3 708 810 47 0 0 chr3 16246605 16246712 -143353071 + (TC)n Simple_repeat Simple_repeat 1 107 0 3 708 324 35 34 34 chr3 16246719 16246778 -143353005 + (CCAA)n Simple_repeat Simple_repeat 1 59 0 3 708 405 0 0 0 chr3 16247020 16247065 -143352718 + (TC)n Simple_repeat Simple_repeat 1 45 0 3 708 252 0 0 0 chr3 16247065 16247092 -143352691 + (CA)n Simple_repeat Simple_repeat 1 28 0 3 708 1582 216 19 125 chr3 16247128 16247352 -143352431 - MTC LTR MaLR 0 421 251 3 708 1238 83 29 6 chr3 16247352 16247522 -143352261 - B2_Mm2 SINE B2 -17 178 5 3 708 1582 216 19 125 chr3 16247522 16247768 -143352015 - MTC LTR MaLR -171 250 1 3 708 3057 155 11 2 chr3 16247800 16248342 -143351441 - Lx2 LINE L1 -187 5696 5150 3 708 4454 132 82 6 chr3 16248334 16248910 -143350873 + Lx2 LINE L1 5710 6328 -669 3 708 6423 107 63 2 chr3 16248910 16249883 -143349900 - RLTR13D4 LTR ERVK -1 1032 1 3 708 4454 137 12 19 chr3 16249883 16250550 -143349233 + Lx2 LINE L1 6329 6992 -5 3 708 6157 73 2 0 chr3 16250566 16251410 -143348373 - L1_Mus1 LINE L1 0 6567 5722 3 88 36790 46 23 13 chr3 16251437 16257761 -143342022 - L1Md_T LINE L1 -4 6578 192 3 709 1475 120 13 0 chr3 16257762 16257995 -143341788 - L1_Mm LINE L1 -141 5742 5507 3 709 3402 94 4 2 chr3 16258001 16258504 -143341279 + L1_Mm LINE L1 4992 5495 -388 3 709 294 29 0 0 chr3 16258966 16259001 -143340782 + (TC)n Simple_repeat Simple_repeat 1 35 0 3 709 29 70 0 0 chr3 16259285 16259342 -143340441 + AT_rich Low_complexity Low_complexity 1 57 0 3 709 254 341 95 50 chr3 16260328 16260534 -143339249 + ORR1E LTR MaLR 22 238 -121 3 709 2893 81 2 93 chr3 16260534 16260812 -143338971 + BGLII LTR ERVK 1 245 -176 3 709 1204 89 0 11 chr3 16260812 16260994 -143338789 + (GGA)n Simple_repeat Simple_repeat 1 180 0 3 709 2893 81 2 93 chr3 16260994 16261178 -143338605 + BGLII LTR ERVK 246 421 0 3 709 254 341 95 50 chr3 16261178 16261193 -143338590 + ORR1E LTR MaLR 239 252 -107 3 709 229 311 11 22 chr3 16261248 16261340 -143338443 + ORR1E LTR MaLR 289 379 0 3 709 306 0 0 0 chr3 16261542 16261576 -143338207 + (TTTA)n Simple_repeat Simple_repeat 4 37 0 3 709 449 290 84 28 chr3 16261601 16261743 -143338040 - RSINE1 SINE B4 -2 163 14 3 709 243 0 0 0 chr3 16262036 16262063 -143337720 + (T)n Simple_repeat Simple_repeat 1 27 0 3 709 24 0 0 0 chr3 16262195 16262219 -143337564 + AT_rich Low_complexity Low_complexity 1 24 0 3 709 27 0 0 0 chr3 16262708 16262735 -143337048 + AT_rich Low_complexity Low_complexity 1 27 0 3 709 2241 216 66 158 chr3 16262953 16264004 -143335779 - RMER17B LTR ERVK 0 958 5 3 709 414 0 0 0 chr3 16264005 16264051 -143335732 + (CA)n Simple_repeat Simple_repeat 2 47 0 3 709 214 247 24 47 chr3 16266201 16266286 -143333497 + CT-rich Low_complexity Low_complexity 2 84 0 3 709 700 198 59 88 chr3 16266315 16266553 -143333230 + L1_Mur2 LINE L1 2073 2303 -3574 3 709 11540 116 7 23 chr3 16266524 16268488 -143331295 + L1_Mm LINE L1 1997 3928 -1955 3 709 2390 292 51 47 chr3 16268606 16268806 -143330977 - Lx7 LINE L1 -336 7360 7163 3 709 7499 41 40 1 chr3 16268806 16269728 -143330055 - RLTR13A2 LTR ERVK 0 958 1 3 709 2390 292 51 47 chr3 16269728 16270489 -143329294 - Lx7 LINE L1 -534 7162 6395 3 709 23 0 0 0 chr3 16270503 16270526 -143329257 + AT_rich Low_complexity Low_complexity 1 23 0 3 709 1561 218 58 12 chr3 16270590 16270933 -143328850 - ORR1B2 LTR MaLR -8 359 1 4 709 12200 166 23 18 chr3 16271289 16274715 -143325068 - Lx LINE L1 -5 6649 3197 4 709 6756 101 5 12 chr3 16274727 16276363 -143323420 - L1_Mus2 LINE L1 -2 6564 4938 4 709 1219 91 0 0 chr3 16276361 16276548 -143323235 - L1_Mus2 LINE L1 -1739 4144 3958 4 709 402 21 0 0 chr3 16276743 16276790 -143322993 + (TA)n Simple_repeat Simple_repeat 2 48 0 4 709 244 236 0 35 chr3 16278218 16278275 -143321508 + MTD LTR MaLR 1 55 -366 4 709 1483 174 106 45 chr3 16278264 16278662 -143321121 + MTC-int LTR MaLR 835 1256 -2 4 709 1614 214 25 8 chr3 16278664 16279037 -143320746 + MTC LTR MaLR 1 409 -12 4 709 712 173 205 0 chr3 16279311 16279496 -143320287 + URR1A DNA MER1_type 1 223 -3 4 709 633 262 412 45 chr3 16279930 16280211 -143319572 - ORR1C2 LTR MaLR 0 384 1 4 709 1023 90 0 0 chr3 16280241 16280386 -143319397 + L1Md_F2 LINE L1 6092 6236 -346 4 709 2970 67 2 32 chr3 16280388 16280788 -143318995 - RLTR10 LTR ERVK -2 388 1 4 709 14454 42 25 40 chr3 16280788 16282767 -143317016 - RLTR10-int LTR ERVK -1 1986 39 4 709 3129 47 2 32 chr3 16282777 16283177 -143316606 - RLTR10 LTR ERVK -2 388 1 4 709 2399 79 29 9 chr3 16283177 16283521 -143316262 + L1Md_F2 LINE L1 6231 6581 -1 4 709 285 292 9 0 chr3 16283578 16283684 -143316099 + L1MB4 LINE L1 5711 5817 -372 4 709 394 311 80 80 chr3 16283777 16283886 -143315897 + L1MB4 LINE L1 5841 5946 -234 4 709 516 181 176 63 chr3 16283886 16284045 -143315738 - B2_Mm2 SINE B2 -15 180 4 4 709 394 311 80 80 chr3 16284045 16284274 -143315509 + L1MB4 LINE L1 5947 6179 -1 4 709 1370 221 163 3 chr3 16284839 16285170 -143314613 + MTD LTR MaLR 13 396 -23 4 709 453 19 0 0 chr3 16285279 16285333 -143314450 + (CA)n Simple_repeat Simple_repeat 2 55 0 4 709 747 280 2 112 chr3 16285392 16285867 -143313916 + Lx7 LINE L1 4505 4927 -1216 4 709 22 0 0 0 chr3 16286033 16286055 -143313728 + AT_rich Low_complexity Low_complexity 1 22 0 4 709 1311 276 46 4 chr3 16286194 16286675 -143313108 + L1_Mur3 LINE L1 4908 5408 -472 4 709 3063 278 43 16 chr3 16286781 16287762 -143312021 + RMER1B Other Other 60 1066 0 4 709 337 274 175 0 chr3 16287766 16287994 -143311789 + Lx7 LINE L1 5447 5685 -2011 4 709 1017 247 14 5 chr3 16288004 16288224 -143311559 + MT2A LTR ERVL 4 225 -308 4 709 335 250 7 50 chr3 16288284 16288423 -143311360 + L1_Rod LINE L1 5655 5787 -60 4 709 625 197 13 6 chr3 16288583 16288686 -143311097 + polypurine Low_complexity Low_complexity 2 106 0 4 709 1151 102 6 0 chr3 16288686 16288863 -143310920 + (GAAA)n Simple_repeat Simple_repeat 3 180 0 4 709 625 197 13 6 chr3 16288863 16288917 -143310866 + polypurine Low_complexity Low_complexity 107 159 0 4 709 249 337 28 19 chr3 16288950 16289056 -143310727 - MER3 DNA MER1_type -86 123 17 4 709 234 0 0 0 chr3 16289388 16289414 -143310369 + (TTTTTG)n Simple_repeat Simple_repeat 3 28 0 4 709 5020 88 4 3 chr3 16289725 16290417 -143309366 + L1_Mus3 LINE L1 5944 6636 -2 4 709 974 318 31 14 chr3 16291665 16291952 -143307831 + B4A SINE B4 1 292 0 4 709 32799 71 2 11 chr3 16293485 16299679 -143300104 - L1Md_F2 LINE L1 -13 6572 340 4 709 6547 124 38 5 chr3 16300235 16301749 -143298034 - Lx LINE L1 -1 6653 5081 4 709 441 0 0 0 chr3 16301923 16301972 -143297811 + (TC)n Simple_repeat Simple_repeat 2 50 0 4 709 441 0 0 0 chr3 16301973 16302022 -143297761 + (TA)n Simple_repeat Simple_repeat 2 50 0 4 709 396 0 0 0 chr3 16302193 16302237 -143297546 + (TA)n Simple_repeat Simple_repeat 2 45 0 4 709 189 0 0 0 chr3 16302238 16302259 -143297524 + (GA)n Simple_repeat Simple_repeat 1 21 0 4 709 4545 137 47 24 chr3 16302815 16303606 -143296177 - RMER17D2 LTR ERVK 0 809 1 4 709 375 224 43 8 chr3 16304195 16304312 -143295471 - Lx9 LINE L1 -7 7637 7517 4 709 423 0 0 0 chr3 16304314 16304361 -143295422 + (CA)n Simple_repeat Simple_repeat 2 48 0 4 709 1819 221 117 0 chr3 16304366 16304845 -143294938 - Lx9 LINE L1 -180 7464 6930 4 709 1125 209 138 0 chr3 16304856 16305153 -143294630 + Lx9 LINE L1 6589 6926 -718 4 709 679 330 79 42 chr3 16305156 16305650 -143294133 - RMER5 LTR ERV1 -20 514 3 4 709 246 116 0 0 chr3 16305818 16305861 -143293922 + (GA)n Simple_repeat Simple_repeat 1 43 0 4 709 275 227 15 0 chr3 16306478 16306544 -143293239 - MLT1E2 LTR MaLR 0 627 561 4 709 610 275 79 19 chr3 16306856 16307071 -143292712 + Lx8 LINE L1 6978 7205 -268 4 709 3760 113 50 14 chr3 16307168 16308019 -143291764 - Lx3C LINE L1 -815 6161 5288 4 709 447 371 6 17 chr3 16308045 16308226 -143291557 + MLT1K LTR MaLR 417 595 0 4 709 233 188 0 77 chr3 16308313 16308365 -143291418 + PB1D10 SINE Alu 70 117 0 4 709 1162 75 0 7 chr3 16308632 16308780 -143291003 + B1_Mm SINE Alu 1 147 0 4 709 195 42 0 0 chr3 16308785 16308809 -143290974 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 4 709 337 320 162 0 chr3 16308809 16309006 -143290777 + L1MD LINE L1 2864 3092 -3054 4 709 1345 183 23 19 chr3 16309083 16309345 -143290438 + ORR1D1 LTR MaLR 4 266 -108 4 709 619 283 127 54 chr3 16309494 16309859 -143289924 + RMER13A LTR ERVK 182 596 -31 4 709 434 210 80 37 chr3 16309969 16310168 -143289615 + ORR1D1 LTR MaLR 156 376 -8 4 709 277 295 30 56 chr3 16310998 16311267 -143288516 - L1M2 LINE L1 -2427 3716 3455 4 709 4331 12 2 24 chr3 16311464 16311968 -143287815 + MT2_Mm LTR ERVL 1 493 0 4 709 622 295 0 0 chr3 16313261 16313410 -143286373 + B1_Mur2 SINE Alu 1 149 0 4 709 336 197 14 0 chr3 16313832 16313903 -143285880 - Lx2A1 LINE L1 -14 6994 6923 4 709 262 215 0 30 chr3 16313905 16313972 -143285811 + Lx2B LINE L1 6865 6929 -71 4 709 3893 112 9 50 chr3 16315216 16315877 -143283906 + MMVL30-int LTR ERV1 2988 3621 -77 4 709 659 93 6 56 chr3 16315868 16316010 -143283773 + RLTR1B-int LTR ERV1 3221 3299 0 4 709 4128 48 4 4 chr3 16316010 16316512 -143283271 + RLTR1C LTR ERV1 1 502 -1 4 709 885 293 85 50 chr3 16316682 16317045 -143282738 - MTD LTR MaLR -43 376 1 4 709 2385 36 3 0 chr3 16317443 16317787 -143281996 - L1Md_F2 LINE L1 0 6582 6258 4 709 3115 34 0 0 chr3 16317781 16318169 -143281614 - L1Md_F2 LINE L1 -591 5991 5604 4 709 30742 77 3 3 chr3 16318680 16323956 -143275827 + L1Md_F2 LINE L1 219 5589 -297 4 709 7692 58 12 2 chr3 16323956 16324929 -143274854 + L1Md_F2 LINE L1 5590 6572 -13 4 709 2983 205 16 20 chr3 16325266 16325964 -143273819 + L1_Mur2 LINE L1 2139 2833 -3044 4 709 670 367 54 18 chr3 16326883 16327163 -143272620 + B4 SINE B4 1 290 -2 4 709 1003 123 0 7 chr3 16329477 16329624 -143270159 + B1_Mus1 SINE Alu 2 147 -1 4 709 184 321 253 13 chr3 16330612 16330691 -143269092 - MIR3 SINE MIR -96 112 15 4 709 22 70 0 0 chr3 16330982 16331025 -143268758 + AT_rich Low_complexity Low_complexity 1 43 0 4 709 660 44 53 0 chr3 16332115 16332228 -143267555 + (GA)n Simple_repeat Simple_repeat 1 119 0 4 709 2747 198 58 76 chr3 16332766 16333400 -143266383 - RMER20B LTR ERVK -4 623 1 4 709 30086 75 5 21 chr3 16334478 16336082 -143263701 + L1Md_F2 LINE L1 392 1967 -3916 4 709 243 0 0 0 chr3 16336082 16336109 -143263674 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 4 709 30086 81 7 1 chr3 16336109 16339703 -143260080 + L1Md_F2 LINE L1 1968 5585 -298 4 709 7935 59 0 0 chr3 16339703 16340685 -143259098 + L1Md_F2 LINE L1 5587 6568 -14 4 709 2023 158 25 14 chr3 16341887 16342252 -143257531 + Lx4A LINE L1 6185 6553 -505 4 709 192 152 0 0 chr3 16342279 16342312 -143257471 + (TG)n Simple_repeat Simple_repeat 2 34 0 4 709 680 253 47 52 chr3 16342393 16342585 -143257198 - B3 SINE B2 -6 210 20 4 709 44 80 0 0 chr3 16342612 16342712 -143257071 + AT_rich Low_complexity Low_complexity 1 100 0 4 709 2759 77 24 51 chr3 16342712 16343123 -143256660 - L1_Mus2 LINE L1 0 6566 6167 4 709 288 77 0 0 chr3 16343930 16343969 -143255814 + (TC)n Simple_repeat Simple_repeat 2 40 0 4 709 249 322 85 0 chr3 16343970 16344029 -143255754 - RSINE1 SINE B4 0 165 102 4 709 21 57 0 0 chr3 16344162 16344197 -143255586 + AT_rich Low_complexity Low_complexity 1 35 0 4 709 279 269 76 9 chr3 16344243 16344348 -143255435 + Lx8 LINE L1 6808 6919 -554 4 709 477 339 84 14 chr3 16344427 16344786 -143254997 + Lx8 LINE L1 7047 7430 -43 4 709 25 0 0 0 chr3 16344819 16344844 -143254939 + AT_rich Low_complexity Low_complexity 1 25 0 4 709 2106 294 59 19 chr3 16345125 16346159 -143253624 + RMER1A Other Other 51 812 -530 4 709 17243 122 10 8 chr3 16346157 16350264 -143249519 - L1Md_F LINE L1 -1967 3916 98 4 709 1018 304 52 29 chr3 16350319 16351190 -143248593 - L1MB3 LINE L1 -117 6066 5174 4 709 1348 6 22 11 chr3 16351899 16352077 -143247706 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 4 709 827 113 15 0 chr3 16352128 16352261 -143247522 + (TTTC)n Simple_repeat Simple_repeat 3 137 0 4 709 377 352 43 14 chr3 16352261 16352402 -143247381 - RSINE1 SINE B4 -17 148 4 4 709 242 296 58 9 chr3 16352602 16352746 -143247037 - L1MB3 LINE L1 -1545 4598 4450 4 709 622 232 183 50 chr3 16353066 16353306 -143246477 + RLTR10A LTR ERVK 140 411 0 4 709 356 211 61 52 chr3 16353322 16353437 -143246346 + RLTR10-int LTR ERVK 318 433 -1554 4 709 314 261 47 47 chr3 16353631 16353780 -143246003 + RLTR45-int LTR ERVK 2241 2389 -4153 4 709 1369 303 60 42 chr3 16353787 16355730 -143244053 + RLTR45-int LTR ERVK 3511 5080 -1462 4 709 1616 221 11 29 chr3 16355858 16356346 -143243437 + RLTR45-int LTR ERVK 6590 7042 -202 4 709 619 237 183 50 chr3 16356386 16356626 -143243157 + RLTR10A LTR ERVK 140 411 0 4 709 469 261 85 0 chr3 16356903 16357068 -143242715 - L1MB3 LINE L1 -1688 4452 4274 4 709 192 40 0 0 chr3 16357439 16357464 -143242319 + (A)n Simple_repeat Simple_repeat 1 25 0 4 709 22 0 0 0 chr3 16358200 16358222 -143241561 + AT_rich Low_complexity Low_complexity 1 22 0 4 709 1875 231 70 18 chr3 16358746 16359301 -143240482 - RLTR31A_Mm LTR ERVK 0 584 1 4 709 22 35 0 0 chr3 16359614 16359643 -143240140 + AT_rich Low_complexity Low_complexity 1 29 0 4 709 387 0 0 0 chr3 16360160 16360203 -143239580 + (TA)n Simple_repeat Simple_repeat 1 43 0 4 709 207 0 0 0 chr3 16360363 16360386 -143239397 + (TTTA)n Simple_repeat Simple_repeat 1 23 0 4 709 26 50 0 0 chr3 16360600 16360640 -143239143 + AT_rich Low_complexity Low_complexity 1 40 0 4 709 396 0 0 0 chr3 16360642 16360686 -143239097 + (TG)n Simple_repeat Simple_repeat 1 44 0 4 709 692 343 0 6 chr3 16360688 16360867 -143238916 - B3A SINE B2 -20 178 1 4 709 683 229 89 81 chr3 16360869 16361116 -143238667 + RLTR22_Mur LTR ERVK 536 784 -1064 4 709 8215 81 5 12 chr3 16361116 16362126 -143237657 + Lx3A LINE L1 4920 5913 -1068 4 709 198 0 0 0 chr3 16362126 16362148 -143237635 + (GAAAA)n Simple_repeat Simple_repeat 2 23 0 4 709 8215 117 15 29 chr3 16362148 16363208 -143236575 + Lx3A LINE L1 5914 6968 -13 4 709 321 26 0 0 chr3 16363208 16363246 -143236537 + (TAA)n Simple_repeat Simple_repeat 2 39 0 4 709 4588 125 55 12 chr3 16363282 16364057 -143235726 + RMER17D2 LTR ERVK 1 809 0 4 709 552 300 118 85 chr3 16364182 16364513 -143235270 + RMER12 LTR ERVK 981 1322 0 4 709 180 0 0 0 chr3 16364662 16364682 -143235101 + (TTAAA)n Simple_repeat Simple_repeat 1 20 0 5 709 25 0 0 0 chr3 16364721 16364746 -143235037 + AT_rich Low_complexity Low_complexity 1 25 0 5 709 471 195 0 0 chr3 16365745 16365873 -143233910 + (CA)n Simple_repeat Simple_repeat 1 128 0 5 709 2165 68 20 3 chr3 16366194 16366487 -143233296 + L1_Mus1 LINE L1 6270 6567 0 5 709 359 183 0 12 chr3 16366946 16367029 -143232754 + GA-rich Low_complexity Low_complexity 3 84 0 5 709 367 317 21 37 chr3 16367267 16367457 -143232326 - MER5A DNA MER1_type -1 188 2 5 709 261 340 75 12 chr3 16367842 16367925 -143231858 + MIR SINE MIR 87 170 -92 5 709 414 0 0 0 chr3 16367925 16367971 -143231812 + (TG)n Simple_repeat Simple_repeat 2 47 0 5 709 261 340 75 12 chr3 16367971 16368048 -143231735 + MIR SINE MIR 171 257 -5 5 709 4383 125 81 93 chr3 16368245 16369162 -143230621 + RMER17A2 LTR ERVK 1 906 0 5 709 491 325 44 12 chr3 16369660 16369994 -143229789 - L1MC1 LINE L1 -33 6311 5951 5 709 365 272 57 19 chr3 16370335 16370440 -143229343 - B2_Mm2 SINE B2 -78 117 9 5 709 188 297 113 47 chr3 16370856 16370962 -143228821 - MER5A DNA MER1_type -67 122 10 5 709 199 365 69 46 chr3 16371030 16371205 -143228578 - MIR SINE MIR -3 259 81 5 709 402 21 0 0 chr3 16371342 16371389 -143228394 + (TA)n Simple_repeat Simple_repeat 1 47 0 5 709 546 266 59 43 chr3 16371413 16371706 -143228077 + ORR1E LTR MaLR 6 367 -12 5 709 1650 206 57 11 chr3 16371933 16372302 -143227481 + MTB LTR MaLR 1 386 -14 5 709 219 387 41 27 chr3 16373008 16373154 -143226629 + MIR SINE MIR 33 180 -82 5 709 33306 45 6 6 chr3 16373556 16378749 -143221034 + L1Md_T LINE L1 298 5589 -297 5 709 8379 34 5 0 chr3 16378749 16379740 -143220043 + L1Md_T LINE L1 5590 6585 0 5 709 1554 223 30 24 chr3 16380158 16380530 -143219253 + ORR1D1 LTR MaLR 1 374 0 5 709 910 253 47 0 chr3 16380533 16380766 -143219017 + ORR1D1-int LTR MaLR 4 247 -1123 5 709 893 190 32 32 chr3 16380760 16380950 -143218833 + ORR1D1 LTR MaLR 185 374 0 5 709 244 353 89 34 chr3 16381198 16381377 -143218406 - L2 LINE L2 -1261 2158 1970 5 709 371 350 49 0 chr3 16381398 16381521 -143218262 + RSINE1 SINE B4 4 132 -33 5 709 38 61 0 0 chr3 16381844 16381910 -143217873 + AT_rich Low_complexity Low_complexity 1 66 0 5 709 665 352 51 20 chr3 16381961 16382216 -143217567 + B4A SINE B4 5 267 -25 5 709 4278 137 72 37 chr3 16382524 16383360 -143216423 + RLTR13D6 LTR ERVK 1 893 0 5 709 378 303 29 148 chr3 16383595 16383839 -143215944 + MLT1B LTR MaLR 167 381 -9 5 710 513 58 0 0 chr3 16384622 16384691 -143215092 + (TG)n Simple_repeat Simple_repeat 1 69 0 5 710 180 263 130 83 chr3 16385227 16385335 -143214448 - L2 LINE L2 -3250 169 57 5 710 1037 106 12 0 chr3 16385614 16385775 -143214008 + (GAAA)n Simple_repeat Simple_repeat 2 164 0 5 710 22 35 0 0 chr3 16386209 16386238 -143213545 + AT_rich Low_complexity Low_complexity 1 29 0 5 710 967 149 0 12 chr3 16386370 16386540 -143213243 - RMER6B LTR ERVK -216 245 78 5 710 257 394 0 0 chr3 16387100 16387166 -143212617 + tRNA-Ala-GCA tRNA tRNA 3 68 -7 5 710 719 124 0 16 chr3 16387166 16387289 -143212494 + (GAAA)n Simple_repeat Simple_repeat 2 122 0 5 710 2302 100 39 0 chr3 16387460 16387791 -143211992 + L1_Mus3 LINE L1 6293 6636 -2 5 710 5281 113 12 32 chr3 16388181 16389005 -143210778 + RLTR13C2 LTR ERVK 1 808 0 5 710 224 340 83 45 chr3 16389685 16389842 -143209941 - MIRb SINE MIR -58 210 48 5 710 194 0 0 37 chr3 16389974 16390001 -143209782 + (CAAAAA)n Simple_repeat Simple_repeat 2 27 0 5 710 917 264 49 18 chr3 16390324 16390609 -143209174 - RLTR16 LTR ERVK -208 297 4 5 710 38345 6 0 0 chr3 16391425 16397003 -143202780 + L1Md_A LINE L1 8 5586 -297 5 710 9034 2 0 0 chr3 16397003 16397999 -143201784 + L1Md_A LINE L1 5587 6582 0 5 710 315 0 0 0 chr3 16398188 16398223 -143201560 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 5 710 218 407 62 40 chr3 16399228 16399502 -143200281 + L2b LINE L2 3096 3375 0 5 710 859 140 11 17 chr3 16400213 16400377 -143199406 + CT-rich Low_complexity Low_complexity 18 180 0 5 710 1039 129 6 6 chr3 16400377 16400556 -143199227 + (TTCC)n Simple_repeat Simple_repeat 2 180 0 5 710 859 140 11 17 chr3 16400556 16400572 -143199211 + polypyrimidine Low_complexity Low_complexity 2 17 0 5 710 1096 102 11 11 chr3 16400589 16400767 -143199016 + (TTTC)n Simple_repeat Simple_repeat 3 180 0 5 710 875 156 0 6 chr3 16400784 16400945 -143198838 + CT-rich Low_complexity Low_complexity 2 161 0 5 710 977 117 0 0 chr3 16400970 16401107 -143198676 + B1_Mm SINE Alu 1 137 -10 5 710 329 17 16 49 chr3 16401107 16401168 -143198615 + (CAAAA)n Simple_repeat Simple_repeat 2 60 0 5 710 180 0 0 0 chr3 16401234 16401254 -143198529 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 5 710 1508 41 21 0 chr3 16401256 16401450 -143198333 - L1Md_F3 LINE L1 0 6584 6387 5 710 20824 86 5 2 chr3 16401685 16402750 -143197033 - L1_Mus2 LINE L1 0 6566 5503 5 710 2953 56 56 0 chr3 16402750 16403125 -143196658 + MTA_Mm LTR MaLR 1 396 0 5 710 20824 118 7 16 chr3 16403125 16406065 -143193718 - L1_Mus2 LINE L1 -381 5502 2587 5 710 4872 9 21 2 chr3 16406061 16406627 -143193156 - L1_Mm LINE L1 -176 5707 5131 5 710 897 94 0 7 chr3 16406622 16406761 -143193022 - MusHAL1 LINE L1 -1323 1389 1252 5 710 822 105 0 0 chr3 16406792 16406906 -143192877 - B1_Mm SINE Alu -8 139 26 5 710 7813 129 6 35 chr3 16406906 16408687 -143191096 - L1_Mus2 LINE L1 -3420 2463 734 5 710 434 282 20 13 chr3 16408694 16408845 -143190938 - L1_Mus2 LINE L1 -5802 814 663 5 710 460 283 49 98 chr3 16408870 16409230 -143190553 - L1VL1 LINE L1 -5838 580 56 5 710 235 320 13 0 chr3 16409976 16410054 -143189729 + MIR SINE MIR 183 261 -1 5 710 758 103 34 20 chr3 16410332 16410480 -143189303 + T-rich Low_complexity Low_complexity 2 151 0 5 710 495 0 0 0 chr3 16412392 16412447 -143187336 + (TC)n Simple_repeat Simple_repeat 2 56 0 5 710 318 67 0 0 chr3 16412535 16412580 -143187203 + (TCTA)n Simple_repeat Simple_repeat 2 46 0 5 710 911 67 0 0 chr3 16412584 16412703 -143187080 - B1_Mm SINE Alu 0 147 29 5 710 6133 148 15 8 chr3 16412742 16413791 -143185992 + Lx4A LINE L1 4843 5903 -1155 5 710 1957 137 133 28 chr3 16413791 16414220 -143185563 - IAPLTR2_Mm LTR ERVK 0 475 2 5 710 2969 137 26 16 chr3 16414220 16414412 -143185371 + Lx4A LINE L1 5904 6090 -968 5 710 338 282 251 14 chr3 16414413 16414636 -143185147 - B4 SINE B4 -16 276 1 5 710 259 286 138 55 chr3 16414636 16415170 -143184613 - L1M4 LINE L1 -1969 4177 3604 5 710 216 0 0 0 chr3 16415282 16415306 -143184477 + (T)n Simple_repeat Simple_repeat 1 24 0 5 710 1158 43 0 0 chr3 16415308 16415448 -143184335 - B1_Mus2 SINE Alu -7 140 1 5 710 1321 216 141 20 chr3 16415585 16415939 -143183844 + MTD LTR MaLR 3 399 -20 5 710 518 214 3 0 chr3 16416312 16416412 -143183371 - B1F2 SINE Alu -6 114 13 5 710 8081 120 37 9 chr3 16417052 16418487 -143181296 + Lx3A LINE L1 5499 6981 0 5 710 192 77 0 0 chr3 16418488 16418514 -143181269 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 5 710 735 158 129 25 chr3 16418632 16418872 -143180911 + Lx9 LINE L1 7379 7643 -1 5 710 388 223 48 0 chr3 16419911 16420014 -143179769 - ORR1C2 LTR MaLR -13 371 264 5 710 653 36 12 0 chr3 16420062 16420146 -143179637 + (GA)n Simple_repeat Simple_repeat 2 86 0 5 710 571 340 136 24 chr3 16420147 16420442 -143179341 + ORR1D2 LTR MaLR 35 362 -8 5 710 13736 185 54 39 chr3 16420518 16420701 -143179082 + Lx5 LINE L1 1516 1682 -4195 5 710 1112 130 0 6 chr3 16420701 16420879 -143178904 + B2_Mm2 SINE B2 1 177 -18 5 710 13736 185 54 39 chr3 16420879 16421271 -143178512 + Lx5 LINE L1 1683 2053 -3824 5 710 407 35 18 0 chr3 16421271 16421328 -143178455 + (CA)n Simple_repeat Simple_repeat 2 59 0 5 710 13736 185 54 39 chr3 16421328 16424015 -143175768 + Lx5 LINE L1 2054 4829 -1048 5 710 6632 172 53 80 chr3 16424019 16425244 -143174539 - Lx3C LINE L1 -2 6974 5792 5 710 7053 60 4 17 chr3 16425244 16426148 -143173635 - RLTR13B1 LTR ERVK 0 893 1 5 710 6632 156 44 44 chr3 16426148 16427203 -143172580 - Lx3C LINE L1 -92 5794 4735 5 710 309 26 0 0 chr3 16427203 16427241 -143172542 + (TTTTG)n Simple_repeat Simple_repeat 3 40 0 5 710 6632 174 38 149 chr3 16427241 16427485 -143172298 - Lx3C LINE L1 -1152 4734 4532 5 710 384 260 30 72 chr3 16427485 16427651 -143172132 - RLTR10A LTR ERVK -113 298 140 5 710 6632 174 38 149 chr3 16427651 16428078 -143171705 - Lx3C LINE L1 -1152 4531 4175 5 710 242 323 52 64 chr3 16428425 16428597 -143171186 - RLTR20D LTR ERVK -340 228 59 5 710 10046 174 179 21 chr3 16428608 16429140 -143170643 - L1VL4 LINE L1 -1697 4189 3640 5 710 194 0 39 0 chr3 16429140 16429166 -143170617 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 5 710 10046 174 179 21 chr3 16429166 16429983 -143169800 - L1VL4 LINE L1 -2247 3639 2815 5 710 221 0 35 0 chr3 16429983 16430012 -143169771 + (TTG)n Simple_repeat Simple_repeat 3 32 0 5 710 10046 187 157 17 chr3 16430012 16431559 -143168224 - L1VL4 LINE L1 -3072 2814 879 5 710 2708 232 9 5 chr3 16431696 16432338 -143167445 + Lx5 LINE L1 4818 5462 -415 5 710 3664 249 41 13 chr3 16432335 16433520 -143166263 + Lx5 LINE L1 5794 7041 -9 5 710 1406 247 55 24 chr3 16433647 16434066 -143165717 - Tigger6a DNA MER2_type -181 902 471 5 710 272 343 88 6 chr3 16434142 16434324 -143165459 - Tigger6a DNA MER2_type -731 352 156 5 710 267 31 0 0 chr3 16434357 16434389 -143165394 + (CA)n Simple_repeat Simple_repeat 1 32 0 5 710 478 313 22 15 chr3 16434397 16434533 -143165250 - B1_Mur1 SINE Alu -8 141 5 5 710 283 302 31 0 chr3 16435364 16435460 -143164323 + Lx7 LINE L1 7223 7321 -375 5 710 3195 171 34 0 chr3 16436038 16436687 -143163096 - L1_Mur3 LINE L1 -2955 2925 2255 5 710 1583 248 16 73 chr3 16436687 16437183 -143162600 + RMER6D LTR ERVK 249 716 -4 5 710 3514 184 97 95 chr3 16437302 16437795 -143161988 - RMER19B LTR ERVK 0 902 358 5 710 579 29 0 0 chr3 16437795 16437864 -143161919 + (TA)n Simple_repeat Simple_repeat 1 69 0 5 710 3514 184 97 95 chr3 16437864 16438271 -143161512 - RMER19B LTR ERVK -545 357 2 5 710 261 298 106 0 chr3 16438327 16438421 -143161362 - MIRb SINE MIR -108 160 57 5 710 21 0 0 0 chr3 16438498 16438519 -143161264 + AT_rich Low_complexity Low_complexity 1 21 0 5 710 232 214 186 0 chr3 16438529 16438599 -143161184 - L1MA6 LINE L1 -81 6219 6137 5 710 26 0 0 0 chr3 16438613 16438639 -143161144 + AT_rich Low_complexity Low_complexity 1 26 0 5 710 214 350 17 0 chr3 16438885 16438945 -143160838 + B1F1 SINE Alu 1 61 -88 5 710 994 323 21 42 chr3 16438962 16439340 -143160443 - ORR1D2 LTR MaLR 0 370 1 5 710 5903 77 97 1 chr3 16439667 16440482 -143159301 + RLTR13B1 LTR ERVK 1 893 0 5 710 7303 87 1 2 chr3 16440506 16441761 -143158022 - L1Md_F2 LINE L1 -18 6564 5313 6 710 20145 118 27 17 chr3 16441767 16445920 -143153863 - L1Md_F2 LINE L1 -1500 4383 203 6 710 387 0 0 0 chr3 16445976 16446019 -143153764 + (CA)n Simple_repeat Simple_repeat 2 44 0 6 710 10414 207 62 40 chr3 16446019 16448990 -143150793 - L1_Mm LINE L1 -139 5744 2709 6 710 726 118 100 23 chr3 16449006 16449136 -143150647 - B1_Mus1 SINE Alu 0 148 9 6 710 9265 168 8 43 chr3 16449136 16451841 -143147942 + Lx2 LINE L1 4033 6643 -354 6 710 1164 164 13 27 chr3 16451842 16452067 -143147716 + Lx2 LINE L1 6776 6997 0 6 710 2594 236 110 19 chr3 16452089 16452895 -143146888 + Lx9 LINE L1 6759 7638 -6 6 710 303 299 100 100 chr3 16453486 16453616 -143146167 - B4 SINE B4 -153 139 10 6 710 3498 181 45 23 chr3 16453838 16454530 -143145253 - Lx3B LINE L1 -4 6969 6263 6 710 1721 148 60 13 chr3 16454530 16454838 -143144945 + Lx3B LINE L1 5939 6262 -711 6 710 501 180 18 17 chr3 16456702 16456830 -143142953 + MT2B LTR ERVL 1 131 -402 6 710 24 0 0 0 chr3 16457836 16457860 -143141923 + AT_rich Low_complexity Low_complexity 1 24 0 6 710 549 42 0 0 chr3 16457900 16457972 -143141811 + (GA)n Simple_repeat Simple_repeat 2 73 0 6 710 255 226 0 31 chr3 16457976 16458040 -143141743 + (CATATA)n Simple_repeat Simple_repeat 6 67 0 6 710 1366 270 17 11 chr3 16460373 16460733 -143139050 + Lx6 LINE L1 7098 7459 -1 6 710 2611 244 145 30 chr3 16461237 16462164 -143137619 + Lx6 LINE L1 5473 6511 -949 6 710 185 196 21 42 chr3 16462348 16462396 -143137387 + L3 LINE CR1 3352 3398 -1091 6 710 530 291 148 14 chr3 16463734 16463957 -143135826 + Lx8 LINE L1 6651 6903 -570 6 710 16526 114 40 112 chr3 16463955 16464247 -143135536 + L1Md_F2 LINE L1 996 1249 -5475 6 710 405 0 0 0 chr3 16464247 16464292 -143135491 + (CA)n Simple_repeat Simple_repeat 2 46 0 6 710 20172 115 37 1 chr3 16464292 16468130 -143131653 + L1Md_F2 LINE L1 1250 5585 -298 6 710 7075 86 7 12 chr3 16468131 16469129 -143130654 + L1Md_F2 LINE L1 5587 6579 -3 6 710 1091 230 20 162 chr3 16469132 16469631 -143130152 + L1_Mur3 LINE L1 3382 3809 -2071 6 710 28887 142 20 24 chr3 16469634 16474309 -143125474 + L1_Mus2 LINE L1 225 4865 -1018 6 710 2248 85 71 15 chr3 16474309 16474645 -143125138 - L1Md_F2 LINE L1 -11 6571 6217 6 710 28887 115 12 15 chr3 16474645 16476351 -143123432 + L1_Mus2 LINE L1 4866 6564 -2 6 710 3942 207 67 41 chr3 16476363 16477473 -143122310 + L1_Mur3 LINE L1 3807 4944 -936 6 710 946 334 81 18 chr3 16477624 16478118 -143121665 + RMER1B Other Other 1 525 -541 6 710 38481 7 0 1 chr3 16478316 16484104 -143115679 + L1Md_A LINE L1 1 5586 -297 6 710 8832 12 0 0 chr3 16484104 16485132 -143114651 + L1Md_A LINE L1 5587 6582 0 6 710 235 328 31 0 chr3 16485329 16485393 -143114390 - MER5B DNA MER1_type -7 171 106 6 710 1983 194 52 0 chr3 16486859 16487394 -143112389 + Lx5 LINE L1 866 1424 -2490 6 710 1932 220 53 66 chr3 16487398 16487929 -143111854 - RLTR31_Mur LTR ERVK -3 550 27 6 710 2454 256 87 59 chr3 16487936 16489158 -143110625 - RMER3D-int LTR ERVK -192 2650 1395 6 710 877 191 0 6 chr3 16489224 16489403 -143110380 + Lx5 LINE L1 1416 1593 -4293 6 710 818 141 0 0 chr3 16489399 16489520 -143110263 - Lx3A LINE L1 -420 6561 6441 6 710 2798 105 2 19 chr3 16489520 16489936 -143109847 + Lx3A LINE L1 6569 6977 -4 6 710 20142 180 30 29 chr3 16489954 16494398 -143105385 + Lx5 LINE L1 1578 6021 -1029 6 710 942 324 47 10 chr3 16494388 16494931 -143104852 - L1MA9 LINE L1 -404 5908 5347 6 710 2228 208 111 32 chr3 16494968 16495590 -143104193 - RMER6C LTR ERVK 0 690 20 6 710 668 301 19 8 chr3 16495874 16496135 -143103648 - L1MA9 LINE L1 -1260 4883 4620 6 710 238 317 9 46 chr3 16496140 16496249 -143103534 + MER63B DNA AcHobo 282 386 -50 6 710 220 234 0 0 chr3 16496850 16496897 -143102886 + A-rich Low_complexity Low_complexity 1 47 0 6 710 814 321 89 24 chr3 16498145 16498483 -143101300 + MLT1A0 LTR MaLR 6 365 0 6 710 185 345 22 54 chr3 16499405 16499497 -143100286 - L2c LINE L2 -248 3139 3051 6 710 200 242 104 15 chr3 16499671 16499738 -143100045 + L3 LINE CR1 4397 4469 -20 6 710 1401 278 100 38 chr3 16501353 16501460 -143098323 - RLTR20A2 LTR ERVK -15 563 462 1 710 3444 67 2 2 chr3 16501460 16501911 -143097872 - L1_Mus2 LINE L1 0 6566 6116 2 710 1401 278 100 38 chr3 16501911 16502333 -143097450 - RLTR20A2 LTR ERVK -117 461 1 1 710 296 72 28 28 chr3 16502393 16502464 -143097319 + (TTTTG)n Simple_repeat Simple_repeat 2 72 0 3 710 192 386 48 35 chr3 16502833 16503064 -143096719 - L2a LINE L2 -100 3326 3093 4 710 29 0 0 0 chr3 16503524 16503553 -143096230 + AT_rich Low_complexity Low_complexity 1 29 0 5 710 297 311 50 16 chr3 16505349 16505470 -143094313 + Arthur1 DNA Tip100 24 148 -3799 6 710 1915 216 115 12 chr3 16505814 16506416 -143093367 - Lx9 LINE L1 -1 7643 6980 7 710 2902 170 35 8 chr3 16506611 16507127 -143092656 - Lx4A LINE L1 0 7058 6529 8 710 7446 166 50 16 chr3 16507128 16508502 -143091281 + Lx4A LINE L1 5637 7056 -2 9 710 286 282 128 47 chr3 16508531 16508829 -143090954 + Arthur1 DNA Tip100 3536 3857 -90 6 710 25 31 0 0 chr3 16509446 16509478 -143090305 + AT_rich Low_complexity Low_complexity 1 32 0 1 710 605 301 50 5 chr3 16509480 16509700 -143090083 + L1MA4 LINE L1 5695 5924 -376 1 710 533 255 58 69 chr3 16510017 16510190 -143089593 + MTEa LTR MaLR 2 172 -207 1 710 9960 103 18 1 chr3 16510196 16511880 -143087903 - L1_Mus2 LINE L1 -495 6071 4352 1 710 3497 99 2 0 chr3 16511880 16512365 -143087418 + L1_Mus2 LINE L1 6080 6565 -1 1 710 610 266 47 47 chr3 16512374 16512587 -143087196 + MTEa LTR MaLR 167 379 0 1 710 331 336 55 14 chr3 16512588 16512805 -143086978 - L1MC4 LINE L1 -698 7344 7119 1 710 3031 113 28 17 chr3 16512967 16513434 -143086349 - Lx3_Mus LINE L1 -470 6539 6068 1 710 356 253 42 76 chr3 16513723 16513899 -143085884 + RLTR11B LTR ERVK 288 519 -9 1 710 703 253 170 59 chr3 16514135 16514576 -143085207 - RMER17C-int LTR ERVK -141 3097 2608 1 710 333 169 0 94 chr3 16514662 16514747 -143085036 - RLTR19-int LTR ERVK -2880 3257 3181 1 711 286 235 44 0 chr3 16515314 16515382 -143084401 - MYSERV-int LTR ERVK -795 5755 5685 1 711 318 0 354 0 chr3 16516060 16516187 -143083596 + (ACTAG)n Simple_repeat Simple_repeat 2 173 0 2 711 1594 223 5 71 chr3 16516733 16517158 -143082625 - RMER10B LTR ERVL 0 398 2 2 711 1172 244 54 36 chr3 16517171 16517503 -143082280 + RLTR20A LTR ERVK 1 338 -203 2 711 4066 194 48 35 chr3 16518334 16519275 -143080508 + MYSERV16_I-int LTR ERVK 6 935 -1391 2 711 545 93 12 0 chr3 16519286 16519372 -143080411 + MYSERV16_I-int LTR ERVK 1075 1161 -1165 2 711 4244 170 44 14 chr3 16519372 16520275 -143079508 + MYSERV16_I-int LTR ERVK 1320 2249 -77 2 711 326 306 34 40 chr3 16520275 16520452 -143079331 - L1_Rod LINE L1 -125 5722 5547 2 711 31523 74 10 2 chr3 16520485 16525455 -143074328 - L1Md_T LINE L1 -12 6570 1566 2 711 3462 51 0 5 chr3 16525455 16525889 -143073894 - L1Md_F2 LINE L1 0 6582 6151 2 711 31523 31 1 0 chr3 16525889 16528316 -143071467 - L1Md_T LINE L1 0 5883 1534 2 711 34845 37 21 46 chr3 16528301 16533491 -143066292 - L1Md_T LINE L1 -2 6580 1520 2 711 8104 47 1 0 chr3 16533491 16534486 -143065297 + L1Md_T LINE L1 5587 6582 0 2 711 34845 55 8 50 chr3 16534486 16535561 -143064222 - L1Md_T LINE L1 -4364 1519 495 2 711 4525 141 7 22 chr3 16535554 16536720 -143063063 - L1Md_A LINE L1 -4307 1576 218 2 711 566 123 74 14 chr3 16536751 16536899 -143062884 + CT-rich Low_complexity Low_complexity 2 158 0 2 711 869 177 0 0 chr3 16536900 16537047 -143062736 - B1_Mus1 SINE Alu 0 148 2 3 711 728 329 47 30 chr3 16537050 16537705 -143062078 - L1_Rod LINE L1 -351 5496 4831 2 711 24034 159 27 7 chr3 16537921 16543139 -143056644 + Lx3_Mus LINE L1 382 5702 -181 3 711 189 0 0 0 chr3 16543139 16543160 -143056623 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 3 711 24034 171 31 10 chr3 16543160 16543361 -143056422 + Lx3_Mus LINE L1 5703 5910 -1099 3 711 1612 116 8 8 chr3 16543361 16543614 -143056169 + L1_Mus3 LINE L1 6384 6636 -2 3 711 1461 213 29 17 chr3 16543614 16543641 -143056142 + Lx3_Mus LINE L1 5911 5935 -1074 3 711 9635 169 24 13 chr3 16543996 16545896 -143053887 + L1_Mur2 LINE L1 3102 5022 -855 3 711 3386 142 55 113 chr3 16545899 16546648 -143053135 - RLTR13D6 LTR ERVK -197 705 1 3 711 5064 150 8 8 chr3 16546648 16547801 -143051982 + Lx LINE L1 5227 6377 -277 3 711 338 267 115 49 chr3 16547824 16548068 -143051715 - L1M5 LINE L1 -2213 3933 3674 3 711 23 0 0 0 chr3 16548237 16548260 -143051523 + AT_rich Low_complexity Low_complexity 1 23 0 3 711 339 298 61 0 chr3 16548393 16548524 -143051259 - L1MD LINE L1 -3246 2900 2762 3 711 2148 63 56 3 chr3 16550007 16550311 -143049472 + MTA_Mm LTR MaLR 1 320 -76 4 711 2282 230 53 24 chr3 16550566 16551004 -143048779 - RLTR20B1 LTR ERVK 0 563 110 4 711 3432 79 48 8 chr3 16551004 16551501 -143048282 + L1_Mus4 LINE L1 6120 6636 0 4 711 2282 230 53 24 chr3 16551501 16551609 -143048174 - RLTR20B1 LTR ERVK -454 109 1 4 711 11509 99 7 2 chr3 16551889 16554290 -143045493 - L1_Mus1 LINE L1 0 6567 4155 4 711 471 280 111 19 chr3 16554620 16554848 -143044935 + Lx8 LINE L1 6180 6485 -1159 4 711 21 36 0 0 chr3 16555479 16555507 -143044276 + AT_rich Low_complexity Low_complexity 1 28 0 4 711 554 206 41 0 chr3 16555507 16555653 -143044130 - Lx9 LINE L1 -10 7634 7483 4 711 502 296 12 6 chr3 16555653 16555813 -143043970 - Lx9 LINE L1 -272 7372 7212 4 711 395 19 0 19 chr3 16555943 16555996 -143043787 + (TAA)n Simple_repeat Simple_repeat 2 53 0 4 711 1148 299 98 39 chr3 16556059 16556317 -143043466 - Lx7 LINE L1 -396 7300 7018 4 711 246 62 0 0 chr3 16556317 16556349 -143043434 + (TGG)n Simple_repeat Simple_repeat 1 32 0 4 711 378 0 0 0 chr3 16556351 16556393 -143043390 + (TG)n Simple_repeat Simple_repeat 1 42 0 5 711 1148 299 98 39 chr3 16556393 16556642 -143043141 - Lx7 LINE L1 -679 7017 6760 4 711 297 0 0 0 chr3 16557687 16557720 -143042063 + (TG)n Simple_repeat Simple_repeat 1 33 0 5 711 587 103 0 10 chr3 16557892 16557990 -143041793 + (TC)n Simple_repeat Simple_repeat 2 98 0 5 711 2418 327 73 15 chr3 16558132 16559392 -143040391 - Lx8 LINE L1 0 7473 6141 5 711 292 285 32 24 chr3 16559391 16559517 -143040266 - Lx8 LINE L1 -1 7472 7346 5 711 333 0 0 0 chr3 16559518 16559555 -143040228 + (TG)n Simple_repeat Simple_repeat 2 38 0 5 711 257 75 25 0 chr3 16559555 16559594 -143040189 + (TA)n Simple_repeat Simple_repeat 2 42 0 5 711 1739 275 34 23 chr3 16559637 16560169 -143039614 - Lx8 LINE L1 -562 6911 6374 5 711 35237 17 3 71 chr3 16560196 16561051 -143038732 - L1_Mus2 LINE L1 0 5883 5328 5 711 4942 71 3 14 chr3 16561051 16561712 -143038071 + L1_Mus2 LINE L1 5910 6563 -3 5 711 35237 17 3 71 chr3 16561712 16565554 -143034229 - L1_Mm LINE L1 -556 5327 1504 5 711 1863 10 0 0 chr3 16565575 16565783 -143034000 + L1Md_A LINE L1 5379 5586 -297 5 711 8991 4 0 0 chr3 16565783 16566779 -143033004 + L1Md_A LINE L1 5587 6582 0 5 711 423 98 0 0 chr3 16567369 16567430 -143032353 + (CA)n Simple_repeat Simple_repeat 1 61 0 5 711 227 319 94 34 chr3 16567797 16567914 -143031869 + RMER2 LTR ERV1 403 526 -41 6 711 910 324 93 55 chr3 16567966 16568155 -143031628 - L1_Mur3 LINE L1 -442 5435 5229 6 711 384 22 0 0 chr3 16568155 16568200 -143031583 + (TA)n Simple_repeat Simple_repeat 2 46 0 6 711 1346 318 88 51 chr3 16568200 16568344 -143031439 - L1_Mur3 LINE L1 -649 5228 5086 6 711 2731 58 6 6 chr3 16568344 16568690 -143031093 + ORR1A1 LTR MaLR 1 346 0 6 711 1346 311 81 47 chr3 16568690 16569738 -143030045 - L1_Mur3 LINE L1 -794 5086 4000 6 711 447 19 0 0 chr3 16570868 16570920 -143028863 + (CA)n Simple_repeat Simple_repeat 2 53 0 6 711 20323 129 21 23 chr3 16571477 16572449 -143027334 - L1_Mus4 LINE L1 -258 6378 5477 6 711 910 72 0 39 chr3 16572449 16572579 -143027204 - B1_Mus1 SINE Alu -2 146 22 6 711 20323 129 21 23 chr3 16572579 16572648 -143027135 - L1_Mus4 LINE L1 -258 5476 5412 6 711 1072 62 7 27 chr3 16572648 16572797 -143026986 - B1_Mus1 SINE Alu -2 146 1 6 711 20323 183 26 67 chr3 16572797 16574666 -143025117 - L1_Mus4 LINE L1 -472 5411 3489 6 711 248 0 0 30 chr3 16574666 16574699 -143025084 + (TTA)n Simple_repeat Simple_repeat 2 33 0 6 711 20323 176 21 47 chr3 16574699 16577851 -143021932 - L1_Mus4 LINE L1 -2395 3488 363 6 711 567 223 36 0 chr3 16578133 16578272 -143021511 + Lx3A LINE L1 6825 6968 -13 6 711 339 85 0 0 chr3 16578272 16578319 -143021464 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 7 711 1114 102 6 6 chr3 16578828 16579005 -143020778 + (TTC)n Simple_repeat Simple_repeat 3 179 0 7 711 820 186 6 6 chr3 16579010 16579188 -143020595 + CT-rich Low_complexity Low_complexity 2 179 0 7 711 4129 36 0 2 chr3 16579593 16580091 -143019692 - L1Md_F3 LINE L1 0 6584 6088 7 711 2164 20 0 0 chr3 16580091 16580342 -143019441 + L1Md_F3 LINE L1 5829 6079 -505 7 711 26 0 0 0 chr3 16580350 16580376 -143019407 + AT_rich Low_complexity Low_complexity 1 26 0 7 711 180 385 81 25 chr3 16581758 16581955 -143017828 - L4 LINE RTE -829 1200 993 7 711 384 59 0 0 chr3 16582251 16582302 -143017481 + (TG)n Simple_repeat Simple_repeat 2 52 0 7 711 27 0 0 0 chr3 16582438 16582465 -143017318 + AT_rich Low_complexity Low_complexity 1 27 0 7 711 30 0 0 0 chr3 16582868 16582898 -143016885 + AT_rich Low_complexity Low_complexity 1 30 0 7 711 3035 183 60 10 chr3 16582902 16583481 -143016302 - Lx4A LINE L1 -2 7056 6449 7 711 338 145 129 0 chr3 16583477 16583539 -143016244 - Lx4A LINE L1 -1149 5909 5840 7 711 1302 169 4 30 chr3 16583550 16583819 -143015964 - L1_Mur2 LINE L1 -2391 3486 3225 8 711 585 74 0 0 chr3 16583835 16583930 -143015853 - L1_Mur2 LINE L1 -3232 2645 2551 8 711 2210 205 39 4 chr3 16583899 16584432 -143015351 - L1_Mur3 LINE L1 -1534 4346 3795 8 711 659 355 110 40 chr3 16584494 16585111 -143014672 - Lx7 LINE L1 -2 7471 6812 8 711 526 319 71 6 chr3 16585240 16585423 -143014360 - Lx7 LINE L1 -915 6558 6364 8 711 1542 213 143 29 chr3 16585432 16585809 -143013974 - MTC LTR MaLR -1 420 1 8 711 234 325 153 19 chr3 16585819 16585899 -143013884 - Lx7 LINE L1 -1123 6350 6255 8 711 233 29 29 0 chr3 16585899 16585933 -143013850 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 8 711 234 325 153 19 chr3 16585933 16586009 -143013774 - Lx7 LINE L1 -1219 6254 6173 8 711 1046 298 66 45 chr3 16586038 16586708 -143013075 - Lx7 LINE L1 -1507 6189 5447 8 711 452 106 43 0 chr3 16586796 16586890 -143012893 + (TA)n Simple_repeat Simple_repeat 2 99 0 8 711 411 320 32 14 chr3 16586902 16587114 -143012669 - Lx8 LINE L1 -252 7221 6989 8 711 765 61 0 0 chr3 16588389 16588488 -143011295 + (TTTC)n Simple_repeat Simple_repeat 2 100 0 8 711 21 57 0 0 chr3 16590171 16590206 -143009577 + AT_rich Low_complexity Low_complexity 1 35 0 8 711 392 0 21 0 chr3 16591473 16591521 -143008262 + (TTTTC)n Simple_repeat Simple_repeat 2 50 0 8 711 911 102 12 18 chr3 16591526 16591696 -143008087 + (TTTCC)n Simple_repeat Simple_repeat 3 171 0 9 711 12253 45 5 7 chr3 16591710 16592829 -143006954 - L1Md_F2 LINE L1 -17 6565 5412 9 711 1243 34 0 0 chr3 16592829 16592976 -143006807 - B1_Mm SINE Alu 0 147 1 9 711 12253 77 26 1 chr3 16592976 16594220 -143005563 - L1Md_F2 LINE L1 -472 5411 4166 9 711 22012 130 38 40 chr3 16594213 16599332 -143000451 - L1Md_F LINE L1 -136 5747 637 9 711 2143 129 212 28 chr3 16599441 16599904 -142999879 + RLTR6_Mm LTR ERV1 37 584 -70 9 711 2133 125 0 0 chr3 16599904 16600207 -142999576 - L1Md_F LINE L1 -5976 640 338 9 711 240 163 0 0 chr3 16600208 16600251 -142999532 + T-rich Low_complexity Low_complexity 1 43 0 9 711 212 122 0 47 chr3 16600900 16600943 -142998840 + A-rich Low_complexity Low_complexity 1 41 0 9 711 228 356 161 4 chr3 16600979 16601233 -142998550 + L4 LINE RTE 1372 1665 -364 9 711 226 295 77 0 chr3 16601653 16601731 -142998052 + B1F SINE Alu 40 123 -26 9 711 474 238 25 23 chr3 16601768 16601899 -142997884 - Lx7 LINE L1 -381 5790 5640 9 711 1129 62 0 20 chr3 16602736 16602884 -142996899 + B1_Mus1 SINE Alu 2 146 -2 1 711 336 24 0 0 chr3 16602888 16602929 -142996854 + (CAAAA)n Simple_repeat Simple_repeat 4 44 0 1 711 468 0 0 0 chr3 16604487 16604539 -142995244 + (TC)n Simple_repeat Simple_repeat 1 52 0 1 711 424 267 112 0 chr3 16605351 16605512 -142994271 + MER2 DNA MER2_type 56 234 -111 1 711 213 146 0 0 chr3 16606494 16606542 -142993241 + (T)n Simple_repeat Simple_repeat 1 48 0 1 711 2394 211 259 29 chr3 16609107 16609833 -142989950 - RMER1B Other Other 0 1066 174 1 711 11120 171 11 44 chr3 16609833 16611908 -142987875 + Lx LINE L1 3242 5168 -1486 1 711 198 0 0 0 chr3 16611908 16611930 -142987853 + (A)n Simple_repeat Simple_repeat 1 22 0 1 711 11120 171 11 44 chr3 16611930 16613521 -142986262 + Lx LINE L1 5169 6647 -7 1 711 1373 89 6 0 chr3 16613531 16613858 -142985925 + (GAAA)n Simple_repeat Simple_repeat 1 328 0 1 711 6992 89 18 3 chr3 16613932 16614981 -142984802 + L1_Mus1 LINE L1 5506 6567 0 1 711 528 219 88 7 chr3 16615742 16615889 -142983894 - Lx2B LINE L1 -18 6982 6824 1 711 267 31 0 0 chr3 16616070 16616102 -142983681 + (CA)n Simple_repeat Simple_repeat 1 32 0 1 711 233 229 21 0 chr3 16616219 16616267 -142983516 - RMER15 LTR ERVL -526 49 1 1 711 26 30 0 0 chr3 16616324 16616357 -142983426 + AT_rich Low_complexity Low_complexity 1 33 0 1 711 363 297 18 88 chr3 16618091 16618261 -142981522 + MLT1A LTR MaLR 21 178 -196 1 711 1687 256 42 0 chr3 16618342 16618725 -142981058 - MTD LTR MaLR -14 405 7 1 711 267 54 0 0 chr3 16618728 16618765 -142981018 + (CAAA)n Simple_repeat Simple_repeat 1 37 0 1 711 886 230 194 11 chr3 16619494 16619865 -142979918 - RLTR18 LTR ERVK -7 609 171 1 711 21 0 0 0 chr3 16620202 16620223 -142979560 + AT_rich Low_complexity Low_complexity 1 21 0 1 711 432 276 121 35 chr3 16620247 16620420 -142979363 + MER92B LTR ERV1 54 241 -395 1 711 345 252 70 0 chr3 16620585 16620700 -142979083 + MER92B LTR ERV1 290 412 0 1 711 21 0 0 0 chr3 16620885 16620906 -142978877 + AT_rich Low_complexity Low_complexity 1 21 0 1 711 1862 159 50 22 chr3 16621096 16621500 -142978283 + ETnERV2-int LTR ERVK 1671 2085 -5321 1 711 1619 189 206 27 chr3 16621497 16621972 -142977811 + ETnERV2-int LTR ERVK 2428 2987 -4419 1 711 4155 179 34 38 chr3 16621988 16623682 -142976101 + ETnERV2-int LTR ERVK 2356 4085 -3321 1 711 1521 165 45 17 chr3 16623651 16624009 -142975774 + ETnERV2-int LTR ERVK 6127 6449 -957 1 711 1618 125 12 8 chr3 16623983 16624233 -142975550 + ETnERV3-int LTR ERVK 5530 5780 -28 1 711 2003 186 148 8 chr3 16624242 16624715 -142975068 + RLTR13D6 LTR ERVK 1 539 -363 1 711 501 82 0 27 chr3 16624715 16624790 -142974993 + ETnERV2-int LTR ERVK 7331 7403 -3 1 711 1858 153 117 27 chr3 16624792 16625167 -142974616 + RLTR9E LTR ERVK 1 409 0 1 711 26 50 0 0 chr3 16625220 16625260 -142974523 + AT_rich Low_complexity Low_complexity 1 40 0 1 711 539 328 19 10 chr3 16625468 16625674 -142974109 + B3 SINE B2 4 211 -5 1 711 282 160 0 0 chr3 16625903 16625953 -142973830 + T-rich Low_complexity Low_complexity 1 50 0 1 711 502 331 148 4 chr3 16625953 16626217 -142973566 - MTB_Mm LTR MaLR -53 354 53 1 711 761 71 0 9 chr3 16626253 16626367 -142973416 + (GGAA)n Simple_repeat Simple_repeat 3 115 0 1 711 12136 108 20 3 chr3 16626370 16628942 -142970841 - L1VL4 LINE L1 -731 2828 213 1 711 250 265 0 0 chr3 16628944 16628993 -142970790 - L1VL4 LINE L1 -6066 236 188 1 711 381 75 0 0 chr3 16629190 16629243 -142970540 + (TC)n Simple_repeat Simple_repeat 2 54 0 1 711 560 361 52 72 chr3 16629248 16629538 -142970245 - B4 SINE B4 0 292 9 1 711 1713 310 36 15 chr3 16629895 16630725 -142969058 - Lx5 LINE L1 0 7050 6429 1 711 1208 236 16 0 chr3 16630737 16631059 -142968724 - L1_Mur3 LINE L1 -4090 1796 1470 1 711 794 239 49 36 chr3 16631043 16631484 -142968299 - L1_Mur3 LINE L1 -6422 1306 892 1 711 2932 71 5 0 chr3 16631869 16632250 -142967533 - L1_Mus2 LINE L1 -1 6565 6183 1 711 491 317 20 7 chr3 16634673 16634819 -142964964 - RSINE1 SINE B4 -15 150 3 1 711 301 207 49 49 chr3 16634857 16634979 -142964804 - Lx9 LINE L1 0 7644 7523 1 711 369 0 0 0 chr3 16635212 16635253 -142964530 + (TTTA)n Simple_repeat Simple_repeat 2 42 0 1 711 228 86 0 0 chr3 16635616 16635651 -142964132 + (TTG)n Simple_repeat Simple_repeat 2 36 0 1 711 3033 71 2 5 chr3 16636355 16636752 -142963031 - MTA_Mm LTR MaLR 0 396 1 1 711 270 0 0 0 chr3 16637027 16637057 -142962726 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 1 711 21 0 0 0 chr3 16637064 16637085 -142962698 + AT_rich Low_complexity Low_complexity 1 21 0 1 711 203 307 13 0 chr3 16637291 16637366 -142962417 + CT-rich Low_complexity Low_complexity 2 77 0 1 711 961 158 58 0 chr3 16637374 16637545 -142962238 - B2_Mm2 SINE B2 -14 181 1 1 711 13682 153 20 13 chr3 16637548 16640981 -142958802 - L1_Mus4 LINE L1 -5 6631 3167 1 711 3066 197 73 34 chr3 16640988 16641629 -142958154 + L1_Mus2 LINE L1 410 1075 -5541 1 711 2106 84 3 0 chr3 16641629 16641913 -142957870 + L1_Mus1 LINE L1 6283 6567 0 1 711 23424 135 31 60 chr3 16641913 16644308 -142955475 + L1_Mus2 LINE L1 1076 3524 -3042 1 711 1213 274 53 7 chr3 16644308 16644609 -142955174 - RLTR26 LTR ERVK -1 641 327 1 88 23424 135 31 60 chr3 16644609 16647581 -142952202 + L1_Mus2 LINE L1 3525 6566 0 1 712 7734 167 13 132 chr3 16647589 16650089 -142949694 - L1VL4 LINE L1 -2706 3177 997 1 712 2105 102 12 32 chr3 16650089 16650435 -142949348 + ETnERV3-int LTR ERVK 3648 3986 -3258 1 712 8514 138 19 30 chr3 16650427 16651948 -142947835 + ETnERV3-int LTR ERVK 4297 5800 -8 1 712 1596 234 142 80 chr3 16651955 16652804 -142946979 + RLTR13D6 LTR ERVK 1 902 0 1 712 221 321 62 35 chr3 16652963 16653076 -142946707 + L2b LINE L2 3030 3145 -230 1 712 2026 60 8 4 chr3 16653619 16653885 -142945898 + MTA_Mm LTR MaLR 130 396 0 1 712 7529 90 21 4 chr3 16653885 16654964 -142944819 + MTA_Mm-int LTR MaLR 1 1098 0 1 712 3310 41 5 0 chr3 16654964 16655358 -142944425 + MTA_Mm LTR MaLR 1 396 0 1 712 1534 199 5 91 chr3 16655468 16655843 -142943940 + ORR1B1 LTR MaLR 41 383 -11 1 712 364 332 98 49 chr3 16655996 16656199 -142943584 + MLT1D LTR MaLR 288 500 -5 1 712 1475 128 20 0 chr3 16656520 16656769 -142943014 - Lx2B LINE L1 -1073 5927 5674 1 712 2002 189 162 2 chr3 16656764 16657253 -142942530 - L1_Mur2 LINE L1 -963 4914 4348 1 712 5317 176 33 14 chr3 16657259 16658297 -142941486 + Lx2B LINE L1 5936 6992 -8 1 712 502 355 23 27 chr3 16659612 16659832 -142939951 - MIR SINE MIR -38 224 6 1 712 240 350 58 71 chr3 16660072 16660312 -142939471 - ORR1E LTR MaLR -41 318 82 1 712 32 0 0 0 chr3 16661284 16661316 -142938467 + AT_rich Low_complexity Low_complexity 1 32 0 1 712 284 45 0 43 chr3 16661342 16661389 -142938394 + (CAGAGA)n Simple_repeat Simple_repeat 2 46 0 1 712 345 303 117 24 chr3 16661389 16661602 -142938181 + HAL1-3A_ME LINE L1 1993 2225 -633 1 712 2257 89 9 3 chr3 16661689 16662015 -142937768 + L1_Mus3 LINE L1 6310 6637 -1 1 712 650 240 24 7 chr3 16662146 16662321 -142937462 - Lx7 LINE L1 -1 7695 7534 1 712 3620 269 75 28 chr3 16662342 16663503 -142936280 - Lx7 LINE L1 -489 7207 5993 1 712 7205 204 90 48 chr3 16663512 16664192 -142935591 - L1_Mur3 LINE L1 -429 5451 4751 1 712 518 15 30 0 chr3 16664192 16664258 -142935525 + (TTTTG)n Simple_repeat Simple_repeat 3 70 0 1 712 7205 204 90 48 chr3 16664258 16664371 -142935412 - L1_Mur3 LINE L1 -1130 4750 4628 1 712 378 0 0 0 chr3 16664371 16664413 -142935370 + (TG)n Simple_repeat Simple_repeat 2 43 0 1 712 7205 204 90 48 chr3 16664413 16664662 -142935121 - L1_Mur3 LINE L1 -1253 4627 4365 1 712 1157 75 0 0 chr3 16664662 16664808 -142934975 + B1_Mm SINE Alu 2 147 0 1 712 7205 204 90 48 chr3 16664808 16665900 -142933883 - L1_Mur3 LINE L1 -1516 4364 3228 1 712 5355 148 54 8 chr3 16665918 16665940 -142933843 - Lx3_Mus LINE L1 -6 7003 6987 1 712 216 0 0 0 chr3 16665940 16665964 -142933819 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 1 712 5355 148 54 8 chr3 16665964 16666938 -142932845 - Lx3_Mus LINE L1 -23 6986 5961 1 712 3774 86 15 2 chr3 16666939 16667519 -142932264 + Lx3A LINE L1 5365 5946 -1035 1 712 2516 201 53 50 chr3 16667519 16668068 -142931715 - L1_Mur3 LINE L1 -2687 3193 2644 1 712 351 0 0 0 chr3 16668068 16668107 -142931676 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 712 2516 201 53 50 chr3 16668107 16668312 -142931471 - L1_Mur3 LINE L1 -3237 2643 2437 1 712 1613 211 13 11 chr3 16668310 16668770 -142931013 - L1_Mur3 LINE L1 -4096 1784 1324 1 712 2770 78 36 0 chr3 16668976 16669362 -142930421 + MTB LTR MaLR 1 400 0 1 712 210 156 0 0 chr3 16669473 16669518 -142930265 + (CAAA)n Simple_repeat Simple_repeat 2 46 0 1 712 1044 246 91 6 chr3 16669610 16670104 -142929679 - L1_Mur3 LINE L1 -5758 1328 860 1 712 1169 254 12 12 chr3 16670339 16670663 -142929120 - L1_Mur3 LINE L1 -6809 919 608 1 712 247 158 0 0 chr3 16671721 16671759 -142928024 + B2_Mm2 SINE B2 1 38 -157 1 712 2132 38 0 0 chr3 16671759 16672022 -142927761 + L1Md_F2 LINE L1 5325 5587 -296 1 712 7911 58 2 0 chr3 16672023 16673015 -142926768 + L1Md_F2 LINE L1 5589 6582 0 1 712 630 244 9 32 chr3 16673020 16673194 -142926589 + B3 SINE B2 27 190 -3 1 712 189 224 0 0 chr3 16673258 16673316 -142926467 + (TG)n Simple_repeat Simple_repeat 1 58 0 1 712 275 261 25 127 chr3 16673839 16673918 -142925865 - B1F SINE Alu -3 117 47 1 712 21 0 0 0 chr3 16673930 16673951 -142925832 + AT_rich Low_complexity Low_complexity 1 21 0 1 712 12524 188 116 7 chr3 16673999 16675951 -142923832 - Lx LINE L1 -2 6652 4067 1 712 6572 67 3 52 chr3 16675951 16676891 -142922892 + L1Md_F2 LINE L1 5689 6582 0 1 712 14448 107 16 2 chr3 16676891 16679207 -142920576 - Lx LINE L1 -1812 4071 1725 1 712 12976 114 14 7 chr3 16679202 16681685 -142918098 - L1VL4 LINE L1 -1933 3953 1454 1 712 3220 88 9 5 chr3 16681685 16682132 -142917651 + RLTR13D5 LTR ERVK 1 449 -574 1 712 350 82 78 52 chr3 16682132 16682209 -142917574 - L1M3 LINE L1 -558 5610 5532 1 712 3758 89 82 7 chr3 16682399 16682963 -142916820 + RLTR13D5 LTR ERVK 418 1023 0 1 712 6184 113 2 20 chr3 16682965 16684070 -142915713 - L1VL4 LINE L1 -2457 1457 376 1 712 5490 121 30 2 chr3 16684120 16684966 -142914817 - L1_Mus4 LINE L1 -11 6625 5757 1 712 225 0 0 0 chr3 16685855 16685880 -142913903 + (T)n Simple_repeat Simple_repeat 1 25 0 1 712 4167 130 101 10 chr3 16686238 16686914 -142912869 + RMER19A LTR ERVK 1 737 0 1 712 288 77 0 0 chr3 16686944 16686983 -142912800 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 712 240 368 0 33 chr3 16687000 16687090 -142912693 - ID_B1 SINE B4 -47 177 91 1 712 1504 300 32 9 chr3 16687149 16687714 -142912069 - Lx9 LINE L1 -595 7049 6472 1 712 24 0 0 0 chr3 16687760 16687784 -142911999 + AT_rich Low_complexity Low_complexity 1 24 0 1 712 236 30 30 0 chr3 16687820 16687853 -142911930 + (TA)n Simple_repeat Simple_repeat 2 35 0 1 712 706 124 7 20 chr3 16688892 16689040 -142910743 - L1_Mus4 LINE L1 0 6636 6491 1 712 5963 33 0 5 chr3 16689245 16690000 -142909783 + L1Md_F2 LINE L1 4836 5586 -297 1 712 7693 50 2 48 chr3 16690000 16691044 -142908739 + L1Md_F2 LINE L1 5587 6582 0 1 712 454 165 36 24 chr3 16691176 16691344 -142908439 + (CAGAGA)n Simple_repeat Simple_repeat 4 173 0 1 712 504 231 20 27 chr3 16691939 16692086 -142907697 + MLT1C LTR MaLR 300 445 -22 1 712 2924 59 203 9 chr3 16692529 16692958 -142906825 + RLTR1B LTR ERV1 1 512 0 1 712 63726 19 1 0 chr3 16692958 16700513 -142899270 + MMERGLN-int LTR ERV1 1 7556 0 1 712 2908 66 200 9 chr3 16700513 16700943 -142898840 + RLTR1B LTR ERV1 1 512 0 1 712 375 78 0 0 chr3 16701315 16701366 -142898417 + (TC)n Simple_repeat Simple_repeat 1 51 0 1 712 1575 157 119 62 chr3 16701384 16701771 -142898012 + RLTR9E LTR ERVK 1 409 0 1 712 1380 191 12 107 chr3 16701775 16702185 -142897598 - Lx LINE L1 0 6654 6284 2 712 353 58 0 19 chr3 16704044 16704097 -142895686 + (TA)n Simple_repeat Simple_repeat 2 53 0 2 712 970 249 211 7 chr3 16704451 16704754 -142895029 - ORR1D2 LTR MaLR 0 370 6 2 712 27 62 0 0 chr3 16705123 16705171 -142894612 + AT_rich Low_complexity Low_complexity 1 48 0 2 712 712 246 201 19 chr3 16705305 16705719 -142894064 - L1M4c LINE L1 -1119 5257 4769 2 712 1216 271 73 77 chr3 16705724 16706465 -142893318 - L1M4c LINE L1 -1897 4479 3742 2 712 724 307 78 43 chr3 16706534 16707239 -142892544 - L1M4c LINE L1 -3292 3084 2355 2 712 390 333 18 80 chr3 16707270 16707544 -142892239 - L1M4c LINE L1 -4144 2240 1984 2 712 521 216 446 0 chr3 16707658 16707806 -142891977 - B3 SINE B2 -1 215 2 2 712 27 0 0 0 chr3 16708015 16708042 -142891741 + AT_rich Low_complexity Low_complexity 1 27 0 2 712 811 53 0 1 chr3 16708042 16708160 -142891623 + L1Md_F2 LINE L1 5830 5946 -636 2 712 200 342 161 42 chr3 16708164 16708616 -142891167 - L2 LINE L2 -603 2816 2311 2 712 528 340 67 27 chr3 16709021 16709351 -142890432 - L3b LINE CR1 -92 390 48 2 712 190 137 0 73 chr3 16709628 16709683 -142890100 + (TATG)n Simple_repeat Simple_repeat 1 51 0 2 712 233 55 71 18 chr3 16710938 16710994 -142888789 + (CAAAAA)n Simple_repeat Simple_repeat 2 60 0 2 712 414 57 0 0 chr3 16712751 16712804 -142886979 + (CA)n Simple_repeat Simple_repeat 2 54 0 2 712 326 277 44 9 chr3 16712808 16712921 -142886862 - Lx7 LINE L1 -375 7321 7205 2 712 191 146 24 0 chr3 16712975 16713016 -142886767 + (TTCA)n Simple_repeat Simple_repeat 3 44 0 2 712 1734 272 14 12 chr3 16713026 16713514 -142886269 - Lx6 LINE L1 -177 7283 6795 2 712 1069 215 36 29 chr3 16713511 16713818 -142885965 - L1_Mur3 LINE L1 -7 5873 5565 2 712 236 133 17 0 chr3 16714846 16714906 -142884877 + (TTTG)n Simple_repeat Simple_repeat 1 61 0 2 712 21 0 0 0 chr3 16716524 16716545 -142883238 + AT_rich Low_complexity Low_complexity 1 21 0 2 712 21 0 0 0 chr3 16718510 16718531 -142881252 + AT_rich Low_complexity Low_complexity 1 21 0 2 712 369 0 0 0 chr3 16719929 16719970 -142879813 + (TG)n Simple_repeat Simple_repeat 2 42 0 2 712 231 36 0 0 chr3 16721699 16721727 -142878056 + (CA)n Simple_repeat Simple_repeat 1 28 0 2 712 482 79 0 0 chr3 16723248 16723311 -142876472 - U6 snRNA snRNA -43 64 2 2 712 321 272 0 0 chr3 16723436 16723517 -142876266 - MTD LTR MaLR -338 81 1 2 712 477 308 147 2 chr3 16723524 16723749 -142876034 - B4 SINE B4 -14 278 7 2 712 387 0 0 0 chr3 16724286 16724329 -142875454 + (TC)n Simple_repeat Simple_repeat 2 44 0 2 712 1080 92 0 0 chr3 16724329 16724470 -142875313 - B1_Mus1 SINE Alu -7 141 1 2 712 251 305 139 12 chr3 16725499 16725665 -142874118 - MTE2b LTR MaLR 0 379 193 2 712 1178 55 0 7 chr3 16725672 16725819 -142873964 + B1_Mus2 SINE Alu 1 146 -1 2 712 249 57 0 0 chr3 16725819 16725854 -142873929 + (CAAT)n Simple_repeat Simple_repeat 2 36 0 2 712 240 86 0 0 chr3 16725867 16725902 -142873881 + (TCC)n Simple_repeat Simple_repeat 3 37 0 2 712 745 278 5 11 chr3 16725904 16726093 -142873690 - MTE2b LTR MaLR -191 188 1 2 712 363 375 22 17 chr3 16726652 16726831 -142872952 + MER105 DNA DNA 18 197 -7 2 712 400 356 60 90 chr3 16726959 16727292 -142872491 + ORR1E LTR MaLR 35 357 -2 2 712 459 363 130 17 chr3 16727438 16727668 -142872115 - MLT1K LTR MaLR -250 345 90 2 712 985 61 13 7 chr3 16728426 16728575 -142871208 + L1_Mus3 LINE L1 6487 6636 -2 2 712 733 292 20 17 chr3 16728745 16728981 -142870802 + MTD LTR MaLR 9 244 -175 2 712 945 257 52 186 chr3 16729020 16729437 -142870346 + MTD-int LTR MaLR 1 330 -928 2 712 1306 267 29 63 chr3 16729437 16729989 -142869794 + MT2A LTR ERVL 1 533 0 2 712 945 284 47 147 chr3 16729989 16730335 -142869448 + MTD-int LTR MaLR 331 571 -687 2 712 2081 328 87 71 chr3 16730356 16731093 -142868690 - Lx8 LINE L1 -6 7467 6692 2 712 224 309 16 0 chr3 16731093 16731168 -142868615 - B1F1 SINE Alu -41 76 1 2 712 2081 328 87 71 chr3 16731168 16732335 -142867448 - Lx8 LINE L1 -6 6691 5462 2 712 225 329 13 0 chr3 16732370 16732446 -142867337 - RMER1C Other Other -20 1322 1246 2 712 380 319 30 0 chr3 16732524 16732659 -142867124 - Lx8 LINE L1 -225 7248 7110 2 712 611 163 46 8 chr3 16732657 16732787 -142866996 - L1_Mur3 LINE L1 -433 5447 5313 2 712 270 0 0 0 chr3 16732788 16732818 -142866965 + (TG)n Simple_repeat Simple_repeat 2 31 0 2 712 4950 176 7 14 chr3 16732818 16733686 -142866097 + Lx3C LINE L1 6094 6955 -21 2 712 486 307 8 91 chr3 16733703 16733968 -142865815 - L1_Mur3 LINE L1 -594 5286 5044 2 712 33083 89 10 12 chr3 16733970 16739339 -142860444 + L1Md_F2 LINE L1 411 5761 -122 2 712 3353 50 0 0 chr3 16739339 16739755 -142860028 + L1Md_A LINE L1 6167 6582 0 2 712 6135 67 0 4 chr3 16739752 16740547 -142859236 + L1Md_F2 LINE L1 5783 6574 -8 2 712 327 274 111 46 chr3 16740615 16740768 -142859015 + MTD-int LTR MaLR 1088 1250 -8 2 712 834 319 67 26 chr3 16740779 16741091 -142858692 + MTD LTR MaLR 10 334 -85 2 712 23 33 0 0 chr3 16741152 16741182 -142858601 + AT_rich Low_complexity Low_complexity 1 30 0 2 712 3671 269 32 19 chr3 16741186 16742025 -142857758 - Lx6 LINE L1 -16 7444 6600 2 712 189 0 0 0 chr3 16742025 16742046 -142857737 + (TTAA)n Simple_repeat Simple_repeat 1 21 0 2 712 3671 269 32 19 chr3 16742046 16742151 -142857632 - Lx6 LINE L1 -861 6599 6488 2 712 257 345 73 29 chr3 16742242 16742448 -142857335 + Lx7 LINE L1 7088 7302 -394 2 712 1598 128 0 23 chr3 16742786 16743049 -142856734 + Lx LINE L1 6372 6628 -26 2 712 405 0 0 0 chr3 16743051 16743096 -142856687 + (TA)n Simple_repeat Simple_repeat 2 46 0 2 712 283 283 103 26 chr3 16743352 16743508 -142856275 - Lx8 LINE L1 0 7473 7306 2 712 222 210 24 24 chr3 16743567 16743585 -142856198 + (TA)n Simple_repeat Simple_repeat 1 18 0 2 712 426 20 0 0 chr3 16743585 16743636 -142856147 + (TG)n Simple_repeat Simple_repeat 2 52 0 2 712 222 210 24 24 chr3 16743636 16743700 -142856083 + (TA)n Simple_repeat Simple_repeat 1 64 0 2 712 213 340 100 9 chr3 16744020 16744130 -142855653 + L2a LINE L2 3263 3382 -44 2 712 241 271 7 7 chr3 16744267 16744412 -142855371 + (TA)n Simple_repeat Simple_repeat 1 145 0 2 712 27 29 0 0 chr3 16746235 16746269 -142853514 + AT_rich Low_complexity Low_complexity 1 34 0 2 712 217 203 0 33 chr3 16747938 16747999 -142851784 + T-rich Low_complexity Low_complexity 2 60 0 2 712 3006 65 25 0 chr3 16749131 16749528 -142850255 - L1_Mus1 LINE L1 0 6567 6161 2 712 21 0 0 0 chr3 16750624 16750645 -142849138 + AT_rich Low_complexity Low_complexity 1 21 0 2 712 645 298 14 58 chr3 16751503 16751514 -142848269 - B3A SINE B2 0 198 189 2 712 387 0 0 0 chr3 16751514 16751557 -142848226 + (TA)n Simple_repeat Simple_repeat 2 44 0 2 712 645 298 14 58 chr3 16751557 16751752 -142848031 - B3A SINE B2 -10 188 1 2 712 1222 104 27 5 chr3 16751812 16751996 -142847787 - B2_Mm2 SINE B2 -6 189 2 2 712 759 259 46 0 chr3 16752501 16752698 -142847085 + B3 SINE B2 1 206 -10 2 712 204 40 0 0 chr3 16755813 16755838 -142843945 + (T)n Simple_repeat Simple_repeat 1 25 0 2 712 21 0 0 0 chr3 16756528 16756549 -142843234 + AT_rich Low_complexity Low_complexity 1 21 0 2 712 22 56 0 0 chr3 16756624 16756660 -142843123 + AT_rich Low_complexity Low_complexity 1 36 0 2 712 835 322 147 9 chr3 16758931 16759391 -142840392 + MER74A LTR ERVL 22 544 -14 2 712 207 146 42 0 chr3 16759422 16759470 -142840313 + (TG)n Simple_repeat Simple_repeat 1 50 0 2 712 630 243 7 33 chr3 16760851 16761004 -142838779 + B1_Mur2 SINE Alu 1 149 0 2 712 1323 276 85 64 chr3 16762313 16763095 -142836688 - RMER13A LTR ERVK -20 840 1 2 712 1578 322 118 21 chr3 16763699 16764634 -142835149 + Lx8 LINE L1 6250 7274 -199 2 712 3957 127 47 13 chr3 16767069 16767705 -142832078 + Lx LINE L1 5996 6653 -1 2 712 262 261 0 0 chr3 16768336 16768401 -142831382 + CT-rich Low_complexity Low_complexity 1 65 0 2 712 369 0 0 0 chr3 16772050 16772091 -142827692 + (TC)n Simple_repeat Simple_repeat 2 42 0 2 712 354 98 0 0 chr3 16772091 16772141 -142827642 + (TG)n Simple_repeat Simple_repeat 2 52 0 2 712 216 0 0 0 chr3 16773031 16773055 -142826728 + (A)n Simple_repeat Simple_repeat 1 24 0 2 712 438 20 0 0 chr3 16773135 16773186 -142826597 + (GA)n Simple_repeat Simple_repeat 2 52 0 2 712 2949 80 0 8 chr3 16773740 16774141 -142825642 + L1Md_F2 LINE L1 6185 6582 0 2 712 1493 53 11 0 chr3 16774672 16774862 -142824921 + B2_Mm1t SINE B2 2 193 0 2 712 264 59 0 0 chr3 16776180 16776214 -142823569 + (TG)n Simple_repeat Simple_repeat 1 34 0 2 712 228 35 0 0 chr3 16776294 16776323 -142823460 + (CA)n Simple_repeat Simple_repeat 2 30 0 2 1 24 53 0 0 chr3 16777184 16777222 -142822561 + AT_rich Low_complexity Low_complexity 1 38 0 2 713 212 186 0 23 chr3 16777295 16777339 -142822444 + CT-rich Low_complexity Low_complexity 2 44 0 2 713 192 295 103 0 chr3 16777698 16777776 -142822007 - L3 LINE CR1 -3360 1129 1044 2 713 313 313 110 36 chr3 16779625 16779649 -142820134 - L1MD3 LINE L1 -137 7858 7835 2 713 3081 84 82 44 chr3 16779649 16780147 -142819636 + MURVY-LTR LTR ERV1 1 517 -2 2 713 313 313 110 36 chr3 16780147 16780341 -142819442 - L1MD3 LINE L1 -161 7834 7624 2 713 328 158 13 13 chr3 16782387 16782464 -142817319 + CT-rich Low_complexity Low_complexity 3 79 0 2 713 26 0 0 0 chr3 16783477 16783503 -142816280 + AT_rich Low_complexity Low_complexity 1 26 0 2 713 306 0 0 0 chr3 16783676 16783710 -142816073 + (TTTTC)n Simple_repeat Simple_repeat 5 38 0 2 713 835 322 78 106 chr3 16783830 16784518 -142815265 + RMER13A LTR ERVK 95 763 -97 2 713 7685 213 192 52 chr3 16784832 16787700 -142812083 + Lx6 LINE L1 1459 4730 -1150 2 713 2613 199 29 7 chr3 16787703 16788265 -142811518 + Lx6 LINE L1 5185 5758 -122 2 713 1207 195 162 108 chr3 16788265 16788702 -142811081 - RMER6B LTR ERVK 0 461 1 2 713 1216 261 161 18 chr3 16788705 16789153 -142810630 + Lx6 LINE L1 5758 6269 -1191 2 713 1259 289 124 20 chr3 16789157 16789955 -142809828 + Lx6 LINE L1 6557 7437 -23 2 713 336 243 14 0 chr3 16790137 16790207 -142809576 + RSINE1 SINE B4 44 114 -51 2 713 486 0 0 0 chr3 16790207 16790261 -142809522 + (TC)n Simple_repeat Simple_repeat 1 54 0 2 713 447 19 0 0 chr3 16790261 16790312 -142809471 + (CA)n Simple_repeat Simple_repeat 1 52 0 2 713 380 258 41 18 chr3 16790741 16790901 -142808882 - L1ME1 LINE L1 -304 5936 5774 2 713 373 292 77 42 chr3 16790943 16791204 -142808579 - L1ME1 LINE L1 -510 5669 5400 2 713 310 232 43 0 chr3 16791804 16791873 -142807910 + RMER15-int LTR ERVL 1142 1213 -3786 3 713 843 326 147 57 chr3 16792117 16792773 -142807010 + Lx8 LINE L1 6212 6926 -547 3 713 228 337 193 57 chr3 16792918 16793081 -142806702 + RLTR26 LTR ERVK 165 341 -301 3 713 1059 101 107 0 chr3 16793081 16793250 -142806533 + B2_Mm1t SINE B2 4 190 -3 3 713 228 337 193 57 chr3 16793250 16793366 -142806417 + RLTR26 LTR ERVK 342 482 -160 3 713 514 339 97 19 chr3 16793556 16793805 -142805978 + Lx8 LINE L1 6933 7202 -271 3 713 351 0 0 0 chr3 16793805 16793844 -142805939 + (CA)n Simple_repeat Simple_repeat 2 40 0 3 713 514 339 97 19 chr3 16793844 16793904 -142805879 + Lx8 LINE L1 7203 7265 -208 3 713 412 278 50 43 chr3 16793904 16794043 -142805740 + RMER15 LTR ERVL 403 542 -33 3 713 318 245 148 62 chr3 16794072 16794281 -142805502 - L1MC LINE L1 -1136 5010 4784 3 713 349 343 84 16 chr3 16794326 16794575 -142805208 - L1MD LINE L1 -1721 4425 4160 3 713 3743 46 0 2 chr3 16794631 16795090 -142804693 - L1Md_F2 LINE L1 -1 6581 6124 3 713 23 0 0 0 chr3 16795114 16795137 -142804646 + AT_rich Low_complexity Low_complexity 1 23 0 3 713 22 88 0 0 chr3 16795400 16795457 -142804326 + AT_rich Low_complexity Low_complexity 1 57 0 3 713 21 0 0 0 chr3 16796045 16796066 -142803717 + AT_rich Low_complexity Low_complexity 1 21 0 3 713 22 70 0 0 chr3 16796633 16796676 -142803107 + AT_rich Low_complexity Low_complexity 1 43 0 3 713 1013 217 47 155 chr3 16796995 16797459 -142802324 + Lx9 LINE L1 7227 7640 -4 3 713 18400 58 2 19 chr3 16797470 16800629 -142799154 + L1Md_A LINE L1 478 3576 -2307 3 713 877 92 0 8 chr3 16800623 16800743 -142799040 - L1_Mus2 LINE L1 -400 6166 6048 3 713 2662 118 0 0 chr3 16800745 16801126 -142798657 - L1_Mus2 LINE L1 -27 5856 5476 3 713 2797 62 0 11 chr3 16801126 16801498 -142798285 + L1Md_F2 LINE L1 6215 6582 0 3 713 351 370 60 16 chr3 16802006 16802190 -142797593 - ORR1E LTR MaLR -167 192 1 3 713 26 30 0 0 chr3 16802642 16802675 -142797108 + AT_rich Low_complexity Low_complexity 1 33 0 3 713 252 0 0 0 chr3 16804446 16804474 -142795309 + (CA)n Simple_repeat Simple_repeat 1 28 0 3 713 249 268 23 11 chr3 16804477 16804564 -142795219 - Lx9 LINE L1 -188 7456 7369 3 713 510 248 8 0 chr3 16804563 16804680 -142795103 + Lx9 LINE L1 7076 7193 -451 3 713 249 350 39 55 chr3 16804821 16804948 -142794835 - Charlie16a DNA MER1_type -215 127 3 3 713 1029 208 42 5 chr3 16805813 16806030 -142793753 + URR1B DNA MER1_type 1 225 0 3 713 2436 213 73 22 chr3 16807530 16808595 -142791188 + L1Md_F LINE L1 217 1280 -5806 3 713 14207 115 3 4 chr3 16808600 16810922 -142788861 + L1Md_F LINE L1 1108 3426 -2457 3 713 297 0 0 0 chr3 16810927 16810960 -142788823 + (T)n Simple_repeat Simple_repeat 1 33 0 3 713 21 36 0 0 chr3 16811175 16811203 -142788580 + AT_rich Low_complexity Low_complexity 1 28 0 3 713 6679 56 1 0 chr3 16811362 16812199 -142787584 - L1Md_F2 LINE L1 0 6582 5745 3 713 4544 118 5 8 chr3 16812199 16813002 -142786781 + L1Md_F2 LINE L1 3377 4130 -1753 3 713 24 53 0 0 chr3 16815810 16815848 -142783935 + AT_rich Low_complexity Low_complexity 1 38 0 3 713 289 276 70 39 chr3 16816316 16816444 -142783339 - MLT1N2 LTR MaLR 0 562 431 3 713 276 234 104 0 chr3 16817132 16817209 -142782574 - MER46C DNA MER2_type -11 327 243 3 713 183 42 0 0 chr3 16817817 16817841 -142781942 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 3 713 330 26 0 0 chr3 16817841 16817879 -142781904 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 3 713 1086 97 0 0 chr3 16817879 16818024 -142781759 - B1_Mus1 SINE Alu -2 146 2 3 713 271 346 54 32 chr3 16818025 16818210 -142781573 - MIR SINE MIR -38 224 36 3 713 360 0 0 0 chr3 16818265 16818305 -142781478 + (TG)n Simple_repeat Simple_repeat 1 40 0 3 713 423 38 0 0 chr3 16818511 16818564 -142781219 + (TG)n Simple_repeat Simple_repeat 1 53 0 3 713 597 155 23 0 chr3 16820502 16820631 -142779152 + CT-rich Low_complexity Low_complexity 2 133 0 3 713 735 87 0 0 chr3 16824392 16824496 -142775287 + (TC)n Simple_repeat Simple_repeat 2 105 0 3 713 716 111 0 8 chr3 16826106 16826224 -142773559 + (GAAA)n Simple_repeat Simple_repeat 4 120 0 3 713 4128 171 21 5 chr3 16826258 16827005 -142772778 - Lx2B LINE L1 -4 6996 6238 3 713 1695 204 37 45 chr3 16827017 16827504 -142772279 - L1_Mur2 LINE L1 -950 4927 4445 3 713 8722 172 26 27 chr3 16827499 16827597 -142772186 - L1VL4 LINE L1 -817 2798 2707 3 713 1318 85 0 11 chr3 16827597 16827787 -142771996 - L1Md_F2 LINE L1 0 6582 6395 3 713 8722 172 26 27 chr3 16827787 16828774 -142771009 - L1VL4 LINE L1 -909 2706 1744 3 713 354 23 0 0 chr3 16828774 16828817 -142770966 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 713 8722 184 17 27 chr3 16828817 16830119 -142769664 - L1VL4 LINE L1 -1872 1743 443 3 713 315 0 0 0 chr3 16830223 16830258 -142769525 + (TG)n Simple_repeat Simple_repeat 2 36 0 3 713 868 307 71 59 chr3 16830891 16832020 -142767763 + L1MB8 LINE L1 4535 5667 -517 3 713 307 303 45 0 chr3 16832029 16832161 -142767622 + L1M4 LINE L1 5158 5295 -851 3 713 1259 235 34 6 chr3 16832306 16832627 -142767156 + L1MB8 LINE L1 5847 6176 -2 3 713 200 34 0 33 chr3 16833184 16833214 -142766569 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 3 713 28 48 0 0 chr3 16833221 16833263 -142766520 + AT_rich Low_complexity Low_complexity 1 42 0 3 713 483 18 0 0 chr3 16833295 16833351 -142766432 + (TG)n Simple_repeat Simple_repeat 2 57 0 3 713 448 301 77 13 chr3 16833370 16833525 -142766258 - B4A SINE B4 -16 276 112 3 713 468 51 0 0 chr3 16833843 16833902 -142765881 + (TG)n Simple_repeat Simple_repeat 2 60 0 3 713 281 295 25 13 chr3 16834189 16834268 -142765515 - PB1D7 SINE Alu -40 80 1 3 713 30 27 0 0 chr3 16834286 16834323 -142765460 + AT_rich Low_complexity Low_complexity 1 37 0 3 713 878 201 24 182 chr3 16834323 16834683 -142765100 - Lx9 LINE L1 -14 7630 7335 3 713 5385 87 11 1 chr3 16834683 16835416 -142764367 - L1_Mus2 LINE L1 0 6566 5827 3 713 878 201 24 182 chr3 16835416 16835468 -142764315 - Lx9 LINE L1 -310 7334 7283 3 713 591 15 0 0 chr3 16835520 16835588 -142764195 + (TC)n Simple_repeat Simple_repeat 1 68 0 3 713 198 0 0 0 chr3 16835823 16835845 -142763938 + (TC)n Simple_repeat Simple_repeat 1 22 0 3 713 225 0 0 0 chr3 16835845 16835869 -142763914 + (CA)n Simple_repeat Simple_repeat 1 25 0 3 713 1091 112 71 0 chr3 16836778 16836948 -142762835 - B2_Mm1t SINE B2 -10 183 2 3 713 26 30 0 0 chr3 16838084 16838117 -142761666 + AT_rich Low_complexity Low_complexity 1 33 0 3 713 414 0 0 0 chr3 16840452 16840498 -142759285 + (TG)n Simple_repeat Simple_repeat 1 46 0 3 713 603 40 0 0 chr3 16840568 16840642 -142759141 + (TTCC)n Simple_repeat Simple_repeat 3 76 0 3 713 23 0 0 0 chr3 16842184 16842207 -142757576 + AT_rich Low_complexity Low_complexity 1 23 0 3 713 319 306 116 0 chr3 16843383 16843504 -142756279 + B1F SINE Alu 8 142 -7 3 713 233 246 45 15 chr3 16843872 16843938 -142755845 + ID4 SINE ID 3 70 -13 3 713 393 22 0 0 chr3 16844074 16844120 -142755663 + (TA)n Simple_repeat Simple_repeat 2 47 0 3 713 216 127 55 0 chr3 16844222 16844277 -142755506 + C-rich Low_complexity Low_complexity 6 63 0 3 713 1164 126 39 0 chr3 16846332 16846514 -142753269 - B2_Mm2 SINE B2 -2 193 5 3 713 21094 169 17 15 chr3 16846521 16850990 -142748793 - L1_Mus4 LINE L1 -1 6635 2143 3 713 2525 65 15 3 chr3 16850990 16851327 -142748456 - L1_Mus2 LINE L1 0 6566 6226 3 713 21094 185 17 19 chr3 16851327 16851670 -142748113 - L1_Mus4 LINE L1 -3744 2142 1828 3 713 1476 70 4 70 chr3 16851670 16851899 -142747884 - L1_Mus2 LINE L1 0 6566 6353 3 713 21094 203 34 54 chr3 16851899 16853451 -142746332 - L1_Mus4 LINE L1 -4059 1827 300 3 713 1019 245 35 29 chr3 16853467 16853778 -142746005 - L1VL2 LINE L1 -5936 399 87 3 713 260 358 0 0 chr3 16854436 16854517 -142745266 + ID4 SINE ID 3 83 0 3 713 274 98 19 19 chr3 16855314 16855366 -142744417 + (CGTG)n Simple_repeat Simple_repeat 1 52 0 3 713 739 318 93 8 chr3 16855369 16855616 -142744167 - B4A SINE B4 -23 269 2 3 713 498 68 14 0 chr3 16855882 16855956 -142743827 - B1_Mm SINE Alu 0 147 73 3 713 245 285 20 25 chr3 16856463 16856585 -142743198 + GA-rich Low_complexity Low_complexity 1 121 0 3 713 32469 75 1 0 chr3 16857032 16862376 -142737407 - L1Md_F2 LINE L1 0 6585 1237 3 713 4069 120 7 83 chr3 16862378 16863167 -142736616 - L1Md_F2 LINE L1 -5458 1161 335 3 713 21252 82 24 6 chr3 16863167 16866424 -142733359 - L1Md_F LINE L1 -1413 4470 1154 3 713 5657 128 4 3 chr3 16866426 16867550 -142732233 - L1Md_F LINE L1 -5670 946 98 3 713 39 0 0 0 chr3 16868456 16868495 -142731288 + AT_rich Low_complexity Low_complexity 1 39 0 3 713 766 309 19 55 chr3 16868904 16869161 -142730622 + B4A SINE B4 3 250 -42 3 713 186 43 0 0 chr3 16869232 16869255 -142730528 + (CA)n Simple_repeat Simple_repeat 2 24 0 3 713 576 146 0 0 chr3 16869336 16869439 -142730344 + (CA)n Simple_repeat Simple_repeat 2 104 0 3 713 868 280 139 30 chr3 16869959 16870290 -142729493 - MTE2a LTR MaLR 0 379 13 3 713 180 0 0 0 chr3 16870423 16870443 -142729340 + (T)n Simple_repeat Simple_repeat 1 20 0 3 713 301 351 87 36 chr3 16870574 16870769 -142729014 + MLT1J2 LTR MaLR 101 305 -143 3 713 21 0 0 0 chr3 16871130 16871151 -142728632 + AT_rich Low_complexity Low_complexity 1 21 0 3 713 551 287 66 52 chr3 16871248 16871535 -142728248 - MER33 DNA MER1_type -19 305 15 3 713 1255 309 189 12 chr3 16872024 16873151 -142726632 - Lx9 LINE L1 -689 6955 5630 3 713 396 326 83 102 chr3 16873186 16873715 -142726068 + Lx9 LINE L1 6923 7441 -203 3 713 249 291 0 0 chr3 16873940 16874043 -142725740 + T-rich Low_complexity Low_complexity 1 103 0 3 713 315 0 0 0 chr3 16874513 16874548 -142725235 + (TTA)n Simple_repeat Simple_repeat 2 36 0 3 713 366 80 0 0 chr3 16874557 16874607 -142725176 + (TG)n Simple_repeat Simple_repeat 2 51 0 3 713 215 175 0 66 chr3 16874831 16874845 -142724938 + A-rich Low_complexity Low_complexity 1 14 0 3 713 3943 107 17 3 chr3 16874845 16875471 -142724312 + L1_Mus3 LINE L1 6049 6638 0 3 713 27 73 0 0 chr3 16876150 16876205 -142723578 + AT_rich Low_complexity Low_complexity 1 55 0 3 713 180 0 0 0 chr3 16876469 16876489 -142723294 + (TAAAA)n Simple_repeat Simple_repeat 2 21 0 3 713 261 0 0 0 chr3 16876667 16876696 -142723087 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 3 713 1619 279 128 12 chr3 16877055 16878026 -142721757 + RMER1A Other Other 1 469 -561 3 713 1996 238 79 73 chr3 16878043 16879099 -142720684 + RMER1B Other Other 6 1062 -4 4 713 4876 37 8 0 chr3 16880075 16880664 -142719119 + L1Md_F3 LINE L1 5988 6581 -3 4 713 390 147 0 0 chr3 16881571 16881639 -142718144 + (A)n Simple_repeat Simple_repeat 1 68 0 4 713 441 0 0 0 chr3 16881725 16881774 -142718009 + (GA)n Simple_repeat Simple_repeat 1 49 0 4 713 3622 198 83 47 chr3 16882013 16882995 -142716788 + RLTR25A LTR ERVK 1 1002 -26 4 713 3595 130 51 58 chr3 16883101 16883842 -142715941 + RMER17A LTR ERVK 1 736 -15 4 713 800 284 96 58 chr3 16883861 16884224 -142715559 + RLTR28B LTR ERVL 101 477 -4 4 713 41 21 0 0 chr3 16884396 16884444 -142715339 + AT_rich Low_complexity Low_complexity 1 48 0 4 713 1635 151 14 0 chr3 16886176 16886461 -142713322 - L1_Mus3 LINE L1 -3 6635 6347 4 713 2894 169 22 0 chr3 16886462 16887001 -142712782 + L1_Mur2 LINE L1 5031 5581 -296 4 713 7566 65 2 6 chr3 16887001 16887986 -142711797 + L1Md_F2 LINE L1 5588 6568 -14 4 713 3904 118 2 2 chr3 16887987 16888561 -142711222 + L1_Mus4 LINE L1 5766 6338 -298 4 713 756 304 38 68 chr3 16888627 16888920 -142710863 + B4A SINE B4 1 284 -8 4 713 393 22 0 0 chr3 16888920 16888966 -142710817 + (TG)n Simple_repeat Simple_repeat 2 47 0 4 713 3152 181 30 38 chr3 16889332 16889987 -142709796 + L1VL1 LINE L1 192 841 -5581 4 713 1125 202 129 36 chr3 16889987 16890290 -142709493 - IAPEY3_LTR LTR ERVK -1 331 1 4 713 1407 195 55 15 chr3 16890290 16890633 -142709150 - IAPEz-int LTR ERVK 0 6481 6125 4 713 1549 117 100 30 chr3 16890650 16890967 -142708816 - IAPEY3-int LTR ERVK -342 7338 6965 4 713 1071 142 0 0 chr3 16891032 16891194 -142708589 - IAPEz-int LTR ERVK -1374 5168 5007 4 713 373 140 0 0 chr3 16891194 16891251 -142708532 - IAPEz-int LTR ERVK -6039 503 447 4 713 267 270 49 20 chr3 16891268 16891370 -142708413 - RLTR19-int LTR ERVK -6015 1566 1462 4 713 280 192 58 0 chr3 16891433 16891485 -142708298 - RLTR19-int LTR ERVK -983 1004 950 4 713 621 221 238 17 chr3 16891480 16891715 -142708068 - RLTR19-int LTR ERVK -5475 662 376 4 713 787 211 117 0 chr3 16891683 16891854 -142707929 - RMER16-int LTR ERVK -4903 503 313 4 713 844 122 27 0 chr3 16891837 16891985 -142707798 - MMERVK10C-int LTR ERVK -6722 859 708 4 713 2839 121 2 9 chr3 16892088 16892513 -142707270 - MMERVK10C-int LTR ERVK -7159 422 1 4 713 978 211 143 37 chr3 16892513 16892813 -142706970 - IAPEY3_LTR LTR ERVK 0 332 1 4 713 7820 100 36 7 chr3 16892813 16894143 -142705640 + L1VL1 LINE L1 814 2219 -1479 4 713 1226 118 49 5 chr3 16894139 16894344 -142705439 + L1_Mus3 LINE L1 5756 5969 -669 4 713 19837 144 82 5 chr3 16894350 16899869 -142699914 + L1Md_Gf LINE L1 1 5592 -297 4 713 8391 35 0 0 chr3 16899869 16900865 -142698918 + L1Md_T LINE L1 5587 6582 0 4 713 552 321 27 0 chr3 16905068 16905255 -142694528 + MLT1B LTR MaLR 190 381 -9 4 713 441 0 0 0 chr3 16906180 16906229 -142693554 + (CA)n Simple_repeat Simple_repeat 2 50 0 4 713 952 334 27 30 chr3 16906411 16906781 -142693002 - MTEa LTR MaLR -5 374 6 4 713 4721 152 12 4 chr3 16907193 16908007 -142691776 + Lx2 LINE L1 6176 6996 -1 4 713 671 125 274 14 chr3 16908120 16908266 -142691517 + B2_Mm2 SINE B2 3 186 -9 4 89 303 71 0 0 chr3 16908270 16908312 -142691471 + (TA)n Simple_repeat Simple_repeat 2 43 0 4 714 3202 124 6 16 chr3 16908312 16908804 -142690979 - L1_Mus4 LINE L1 -14 6622 6136 4 714 7534 88 14 4 chr3 16908824 16909920 -142689863 - L1_Mus1 LINE L1 0 7000 5506 4 714 2716 120 207 9 chr3 16909903 16910585 -142689198 + L1_Mus1 LINE L1 4561 5545 -341 4 714 305 100 16 5 chr3 16910627 16910680 -142689103 - Lx LINE L1 -520 6118 6064 4 714 308 324 36 0 chr3 16911460 16911571 -142688212 - PB1D10 SINE Alu -1 116 2 4 714 345 268 43 26 chr3 16911665 16911734 -142688049 - URR1B DNA MER1_type 0 225 155 4 714 2105 200 61 28 chr3 16911734 16912239 -142687544 + RLTR11A2 LTR ERVK 1 522 -5 4 714 507 203 186 0 chr3 16912247 16912365 -142687418 - URR1B DNA MER1_type -85 140 1 4 714 247 283 135 21 chr3 16912365 16912387 -142687396 + CYRA11_Mm Unknown Y-chromosome 258 413 -204 4 714 246 81 0 0 chr3 16913692 16913729 -142686054 + (CA)n Simple_repeat Simple_repeat 2 38 0 4 714 780 323 97 24 chr3 16916471 16917099 -142682684 - L1MD1 LINE L1 -117 6125 5452 4 714 558 265 15 7 chr3 16917113 16917250 -142682533 - RMER15 LTR ERVL -48 527 390 4 714 286 276 53 26 chr3 16917621 16917838 -142681945 - L1MD1 LINE L1 -902 5457 5184 4 714 307 252 37 46 chr3 16918030 16918138 -142681645 - L1MD1 LINE L1 -1037 5109 5003 4 714 746 255 129 8 chr3 16918157 16918529 -142681254 - L1MD1 LINE L1 -1264 4882 4466 4 714 884 128 0 51 chr3 16918554 16918711 -142681072 + RMER19A LTR ERVK 1 149 -588 4 714 2458 76 3 3 chr3 16918711 16919039 -142680744 - L1_Mm LINE L1 -268 5615 5288 4 714 15408 14 0 0 chr3 16919033 16921490 -142678293 - L1Md_A LINE L1 -1 6581 4125 4 714 7224 104 1 24 chr3 16921490 16922588 -142677195 - L1_Mm LINE L1 -594 5289 4217 4 714 3029 284 74 18 chr3 16922593 16923499 -142676284 - Lx5 LINE L1 -94 6956 6000 4 714 17953 201 63 21 chr3 16923515 16923882 -142675901 - L1_Mur3 LINE L1 0 5877 5488 4 714 1052 285 72 20 chr3 16923882 16924422 -142675361 + RLTR12A LTR ERVK 1 568 0 4 714 17953 201 63 21 chr3 16924422 16926393 -142673390 - L1_Mur3 LINE L1 -390 5487 3461 4 714 324 0 0 0 chr3 16926393 16926429 -142673354 + (GTTTG)n Simple_repeat Simple_repeat 3 38 0 4 714 17953 212 58 22 chr3 16926429 16928887 -142670896 - L1_Mur3 LINE L1 -2417 3460 894 4 714 298 222 23 16 chr3 16929180 16929223 -142670560 + ORR1B1-int LTR MaLR 605 648 -861 4 714 623 69 0 0 chr3 16929223 16929310 -142670473 + B1_Mus2 SINE Alu 2 88 -59 4 714 3652 72 33 0 chr3 16929864 16930350 -142669433 + L1_Mus2 LINE L1 6065 6566 0 4 714 317 335 27 91 chr3 16931066 16931253 -142668530 + B3 SINE B2 17 191 -4 4 714 221 171 24 0 chr3 16931888 16931929 -142667854 + (TG)n Simple_repeat Simple_repeat 1 42 0 4 714 438 322 164 88 chr3 16932184 16932751 -142667032 + L1MC4a LINE L1 7001 7611 -271 4 714 225 260 25 38 chr3 16932751 16932831 -142666952 + ID2 SINE ID 2 80 -3 4 714 438 322 164 88 chr3 16932831 16933035 -142666748 + L1MC4a LINE L1 7612 7831 -51 4 714 302 279 109 67 chr3 16935029 16935194 -142664589 - MIR3 SINE MIR -7 201 30 4 714 463 308 157 4 chr3 16936200 16936461 -142663322 - RMER15 LTR ERVL 0 575 275 4 714 450 0 0 0 chr3 16936674 16936724 -142663059 + (TA)n Simple_repeat Simple_repeat 2 51 0 4 714 423 0 0 0 chr3 16936724 16936770 -142663013 + (TG)n Simple_repeat Simple_repeat 2 48 0 4 714 8730 156 8 17 chr3 16937378 16939686 -142660097 - Lx LINE L1 -115 6539 4260 4 714 314 167 0 0 chr3 16939691 16939751 -142660032 + L1_Mur2 LINE L1 3959 4018 -1859 4 714 34 42 0 0 chr3 16942021 16942069 -142657714 + AT_rich Low_complexity Low_complexity 1 48 0 4 714 1308 309 24 0 chr3 16942302 16942677 -142657106 - Lx8 LINE L1 -867 6606 6223 4 714 507 275 102 15 chr3 16942714 16942910 -142656873 - B3 SINE B2 -3 213 1 4 714 22 0 0 0 chr3 16942918 16942940 -142656843 + AT_rich Low_complexity Low_complexity 1 22 0 4 714 549 30 0 0 chr3 16943109 16943176 -142656607 + (TATG)n Simple_repeat Simple_repeat 2 68 0 4 714 377 123 15 0 chr3 16943224 16943289 -142656494 + (TCTA)n Simple_repeat Simple_repeat 4 69 0 4 714 603 265 16 39 chr3 16943398 16943716 -142656067 - Lx8 LINE L1 -1727 5917 5602 4 714 8329 111 22 3 chr3 16944117 16946047 -142653736 - L1_Mus2 LINE L1 0 6654 4607 4 714 3673 153 51 86 chr3 16946047 16946849 -142652934 + RLTR13D6 LTR ERVK 127 900 -2 4 714 19846 148 35 29 chr3 16946849 16951181 -142648602 - L1_Mus2 LINE L1 -1271 4612 249 4 714 342 333 84 21 chr3 16951213 16951691 -142648092 + L1M5 LINE L1 3491 3998 -2148 4 714 497 327 75 0 chr3 16951868 16952027 -142647756 + MTD LTR MaLR 42 212 -207 4 714 342 0 0 0 chr3 16952038 16952076 -142647707 + (TG)n Simple_repeat Simple_repeat 2 39 0 4 714 983 242 35 8 chr3 16952080 16952338 -142647445 + Lx9 LINE L1 6772 7036 -608 4 714 10474 164 43 15 chr3 16952608 16955219 -142644564 + L1VL4 LINE L1 443 3126 -489 4 714 4072 119 123 62 chr3 16955257 16956027 -142643756 - L1_Mus3 LINE L1 -3 6635 5819 4 714 3038 128 84 10 chr3 16956026 16956537 -142643246 + L1_Mus3 LINE L1 5250 5798 -85 4 714 10163 196 63 29 chr3 16956534 16957427 -142642356 + Lx2B LINE L1 3406 4301 -1576 4 714 528 45 0 0 chr3 16957427 16957494 -142642289 + (CA)n Simple_repeat Simple_repeat 2 68 0 4 714 10163 196 63 29 chr3 16957494 16958147 -142641636 + Lx2B LINE L1 4302 5024 -853 4 714 6146 71 11 98 chr3 16958147 16959125 -142640658 - RLTR13B1 LTR ERVK 0 893 1 4 714 10163 183 38 15 chr3 16959125 16961055 -142638728 + Lx2B LINE L1 5025 6995 -5 4 714 238 65 0 0 chr3 16961058 16961089 -142638694 + (GA)n Simple_repeat Simple_repeat 2 32 0 4 714 822 160 0 0 chr3 16961090 16961240 -142638543 + GA-rich Low_complexity Low_complexity 3 152 0 4 714 1853 214 111 43 chr3 16961245 16961820 -142637963 + Lx9 LINE L1 7024 7637 -7 4 714 707 326 0 0 chr3 16961982 16962160 -142637623 + MTD LTR MaLR 13 190 -229 4 714 413 276 60 8 chr3 16962159 16962276 -142637507 + MTD LTR MaLR 297 419 0 4 714 843 224 71 5 chr3 16962276 16962480 -142637303 + MTD LTR MaLR 202 419 0 4 714 291 271 17 8 chr3 16962727 16962846 -142636937 + L1M5 LINE L1 4254 4373 -1773 4 714 231 360 8 53 chr3 16964212 16964344 -142635439 - MLT1F1 LTR MaLR -438 131 6 4 714 22 56 0 0 chr3 16964898 16964934 -142634849 + AT_rich Low_complexity Low_complexity 1 36 0 4 714 563 294 89 23 chr3 16965598 16965926 -142633857 - L1MA6 LINE L1 -5 6286 5948 4 714 1068 102 7 0 chr3 16966830 16966977 -142632806 + B1_Mus1 SINE Alu 1 148 0 4 714 580 112 41 12 chr3 16967002 16967174 -142632609 + A-rich Low_complexity Low_complexity 1 177 0 4 714 1570 126 0 43 chr3 16967236 16967494 -142632289 + L1Md_F2 LINE L1 6324 6570 -12 4 714 315 0 0 0 chr3 16967970 16968005 -142631778 + (T)n Simple_repeat Simple_repeat 1 35 0 4 714 198 0 0 0 chr3 16968929 16968951 -142630832 + (CA)n Simple_repeat Simple_repeat 1 22 0 4 714 1787 259 83 0 chr3 16969066 16969521 -142630262 + Lx5 LINE L1 6549 7041 -9 4 714 22 35 0 0 chr3 16969528 16969557 -142630226 + AT_rich Low_complexity Low_complexity 1 29 0 4 714 967 275 78 35 chr3 16969961 16970361 -142629422 + MTD LTR MaLR 3 419 0 4 714 437 50 17 0 chr3 16970572 16970632 -142629151 + (CA)n Simple_repeat Simple_repeat 1 61 0 4 714 275 338 25 0 chr3 16970773 16970853 -142628930 + MER20B DNA MER1_type 366 447 -336 4 714 2429 103 148 10 chr3 16971791 16972184 -142627599 + RLTR44B LTR ERVK 3 449 0 4 714 698 207 7 0 chr3 16972203 16972353 -142627430 + Lx2 LINE L1 4177 4327 -1559 4 714 3472 180 30 67 chr3 16972354 16972753 -142627030 + Lx2 LINE L1 5075 5431 -446 4 714 3683 90 14 8 chr3 16972753 16973269 -142626514 + L1_Mus1 LINE L1 6049 6567 0 4 714 6250 182 28 31 chr3 16973269 16974622 -142625161 + Lx2 LINE L1 5432 6796 -201 4 714 2260 118 8 24 chr3 16974611 16974984 -142624799 + L1_Mm LINE L1 4355 4721 -1162 4 714 2457 130 25 2 chr3 16974984 16975384 -142624399 + L1_Mus3 LINE L1 6224 6632 -6 4 714 21 0 0 0 chr3 16979697 16979718 -142620065 + AT_rich Low_complexity Low_complexity 1 21 0 5 714 235 343 66 60 chr3 16980883 16981066 -142618717 + Lx8 LINE L1 7156 7339 -134 5 714 289 282 13 0 chr3 16981146 16981224 -142618559 + PB1D9 SINE Alu 22 100 -20 5 714 483 48 0 0 chr3 16981224 16981286 -142618497 + (CA)n Simple_repeat Simple_repeat 1 62 0 5 714 618 300 109 18 chr3 16981542 16981919 -142617864 + Lx5 LINE L1 6621 6785 -265 5 714 951 72 12 23 chr3 16981924 16982096 -142617687 + (TCTA)n Simple_repeat Simple_repeat 1 170 0 5 714 443 0 53 0 chr3 16982096 16982153 -142617630 + (GGAAA)n Simple_repeat Simple_repeat 4 63 0 5 714 252 319 75 0 chr3 16982589 16982683 -142617100 - Tigger7 DNA MER2_type -24 2467 2367 5 714 2031 83 41 3 chr3 16982702 16982993 -142616790 - L1_Mus4 LINE L1 -8 6628 6327 5 714 5381 100 6 3 chr3 16982993 16983788 -142615995 + L1_Mus4 LINE L1 5537 6334 -302 5 714 359 306 39 47 chr3 16984258 16984385 -142615398 - ID_B1 SINE B4 -14 210 85 5 714 8179 50 2 2 chr3 16984587 16986260 -142613523 - L1Md_F2 LINE L1 0 6582 4912 5 714 1124 105 60 6 chr3 16986272 16986454 -142613329 - Lx3_Mus LINE L1 -8 7001 6810 5 714 9106 115 5 7 chr3 16986471 16988398 -142611385 - Lx3_Mus LINE L1 -577 6432 4514 5 714 22 0 0 0 chr3 16988653 16988675 -142611108 + AT_rich Low_complexity Low_complexity 1 22 0 5 714 227 294 12 40 chr3 16989074 16989157 -142610626 + ID4 SINE ID 1 82 -1 5 714 189 107 0 0 chr3 16989278 16989306 -142610477 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 5 714 551 15 15 0 chr3 16989632 16989700 -142610083 + (TCTA)n Simple_repeat Simple_repeat 1 69 0 5 714 23 0 0 0 chr3 16990953 16990976 -142608807 + AT_rich Low_complexity Low_complexity 1 23 0 5 714 1301 207 151 9 chr3 16991052 16991139 -142608644 - RLTR12A LTR ERVK -157 371 261 5 714 414 0 0 0 chr3 16991139 16991185 -142608598 + (TC)n Simple_repeat Simple_repeat 2 47 0 5 714 1301 188 113 0 chr3 16991185 16991415 -142608368 - RLTR12A LTR ERVK -308 260 4 5 714 307 282 82 19 chr3 16992070 16992229 -142607554 - RMER15 LTR ERVL -5 570 402 5 714 374 320 37 42 chr3 16992530 16992745 -142607038 + B3 SINE B2 3 216 0 5 714 203 0 37 0 chr3 16992840 16992867 -142606916 + (TTTG)n Simple_repeat Simple_repeat 4 31 0 5 714 390 21 0 0 chr3 16993403 16993450 -142606333 + (TG)n Simple_repeat Simple_repeat 2 48 0 5 714 1059 301 117 13 chr3 16995771 16996223 -142603560 - Lx LINE L1 -7 7466 6968 5 714 2612 93 6 0 chr3 16996239 16996605 -142603178 - L1Md_A LINE L1 -1 6581 6214 5 714 765 213 46 6 chr3 16996621 16996796 -142602987 + Lx8 LINE L1 6661 6842 -631 5 714 189 0 0 0 chr3 16996965 16996986 -142602797 + (TTTTTG)n Simple_repeat Simple_repeat 2 22 0 5 714 29 0 0 0 chr3 16997711 16997740 -142602043 + AT_rich Low_complexity Low_complexity 1 29 0 5 714 2185 243 64 35 chr3 16997755 16998381 -142601402 - Lx LINE L1 -1 6653 6010 5 714 8040 37 1 16 chr3 16998377 16999432 -142600351 - L1Md_F2 LINE L1 -13 6569 5538 5 714 638 39 0 0 chr3 16999428 16999506 -142600277 + L1Md_F2 LINE L1 5464 5541 -342 5 714 1692 134 50 0 chr3 16999498 16999781 -142600002 - Lx LINE L1 -629 6025 5729 5 714 216 0 0 0 chr3 16999781 16999805 -142599978 + (TC)n Simple_repeat Simple_repeat 2 25 0 5 714 1512 31 5 5 chr3 16999807 17000000 -142599783 - L1Md_F3 LINE L1 -14 6570 6378 5 714 1749 38 0 0 chr3 17000001 17000214 -142599569 - L1Md_F2 LINE L1 -205 6377 6165 1 714 1956 161 6 3 chr3 17000216 17000572 -142599211 - L1_Mm LINE L1 -148 5735 5379 2 714 468 91 0 0 chr3 17000584 17000650 -142599133 + (GA)n Simple_repeat Simple_repeat 1 66 0 3 714 665 265 82 0 chr3 17000654 17000850 -142598933 + Lx6 LINE L1 6514 6725 -735 4 714 942 67 0 62 chr3 17000866 17001058 -142598725 + (TG)n Simple_repeat Simple_repeat 1 180 0 5 714 451 300 62 40 chr3 17001498 17001675 -142598108 + MER82 DNA MER2_type 3 183 -470 6 714 287 197 25 17 chr3 17001757 17001876 -142597907 + (TAGA)n Simple_repeat Simple_repeat 3 122 0 7 714 8543 121 21 1 chr3 17001987 17003052 -142596731 - Lx3_Mus LINE L1 -8 7001 5921 8 714 204 40 0 0 chr3 17003052 17003077 -142596706 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 9 714 8543 102 23 7 chr3 17003077 17004303 -142595480 - Lx3_Mus LINE L1 -1089 5920 4668 8 714 2771 138 18 11 chr3 17004300 17004900 -142594883 - Lx3_Mus LINE L1 -5664 1320 658 8 714 482 200 0 28 chr3 17004946 17005054 -142594729 - Lx3_Mus LINE L1 -6672 312 208 8 714 274 360 51 86 chr3 17005086 17005320 -142594463 + MER82 DNA MER2_type 281 506 -147 6 714 4754 42 0 0 chr3 17005462 17006033 -142593750 + L1Md_T LINE L1 6012 6582 0 1 714 289 319 117 18 chr3 17006034 17006197 -142593586 - RMER20B LTR ERVK -216 411 233 1 714 3003 76 2 5 chr3 17006372 17006769 -142593014 + MTA_Mm LTR MaLR 1 396 0 1 714 258 280 25 25 chr3 17007051 17007172 -142592611 + MER33 DNA MER1_type 177 297 -27 1 714 448 322 34 0 chr3 17007398 17007516 -142592267 + B3 SINE B2 2 123 -93 1 714 2126 78 17 13 chr3 17007521 17007821 -142591962 - L1_Mus1 LINE L1 0 6567 6267 1 714 3243 70 97 0 chr3 17007835 17008465 -142591318 + L1_Mus1 LINE L1 5590 6280 -287 1 714 366 359 9 0 chr3 17008465 17008571 -142591212 + B3 SINE B2 105 211 -5 1 714 25 0 0 0 chr3 17008571 17008596 -142591187 + AT_rich Low_complexity Low_complexity 1 25 0 1 714 201 74 0 0 chr3 17010180 17010207 -142589576 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 714 22 0 0 0 chr3 17010256 17010278 -142589505 + AT_rich Low_complexity Low_complexity 1 22 0 1 714 3494 14 163 0 chr3 17010526 17010950 -142588833 - MT2_Mm LTR ERVL 0 493 1 1 714 21 57 0 0 chr3 17011933 17011968 -142587815 + AT_rich Low_complexity Low_complexity 1 35 0 2 714 1082 224 47 17 chr3 17012023 17012255 -142587528 + ORR1B2 LTR MaLR 78 316 -51 2 714 7591 139 15 15 chr3 17012255 17014230 -142585553 + Lx3B LINE L1 5006 6968 -5 2 714 4891 221 64 38 chr3 17014317 17014589 -142585194 + ORR1B2-int LTR MaLR 1 286 -1223 2 714 191 36 0 35 chr3 17014589 17014618 -142585165 + (TAA)n Simple_repeat Simple_repeat 2 29 0 2 714 4891 221 64 38 chr3 17014618 17015089 -142584694 + ORR1B2-int LTR MaLR 287 785 -724 2 714 378 0 0 0 chr3 17015089 17015131 -142584652 + (TAAA)n Simple_repeat Simple_repeat 1 42 0 2 714 4891 221 64 38 chr3 17015131 17015203 -142584580 + ORR1B2-int LTR MaLR 786 830 -679 2 714 2157 89 0 0 chr3 17015203 17015494 -142584289 - L1_Mus1 LINE L1 0 6567 6277 2 714 4891 221 64 38 chr3 17015494 17015959 -142583824 + ORR1B2-int LTR MaLR 831 1315 -194 2 714 1886 188 51 42 chr3 17015959 17016387 -142583396 + RLTR20C LTR ERVK 1 432 -102 2 714 360 0 0 0 chr3 17016387 17016427 -142583356 + (TG)n Simple_repeat Simple_repeat 2 41 0 2 714 630 132 0 0 chr3 17016430 17016566 -142583217 + (GA)n Simple_repeat Simple_repeat 1 136 0 2 714 283 286 11 32 chr3 17016567 17016661 -142583122 + RLTR20C LTR ERVK 487 578 0 2 714 474 142 53 3 chr3 17016661 17016760 -142583023 + ORR1B1-int LTR MaLR 1311 1408 -101 2 714 2874 113 11 48 chr3 17016760 17017235 -142582548 - Lx3_Mus LINE L1 0 7009 6553 3 714 383 219 64 48 chr3 17017235 17017258 -142582525 + ORR1B1-int LTR MaLR 1278 1300 -70 2 714 1899 172 124 30 chr3 17017251 17017742 -142582041 + RMER17D2 LTR ERVK 273 809 0 3 714 372 59 0 0 chr3 17018303 17018354 -142581429 + (T)n Simple_repeat Simple_repeat 1 51 0 3 714 4324 124 29 0 chr3 17018385 17019076 -142580707 + L1VL1 LINE L1 193 903 -5519 3 714 1517 41 20 0 chr3 17019074 17019270 -142580513 - L1_Mm LINE L1 -300 5583 5384 3 714 558 147 9 0 chr3 17019252 17019361 -142580422 - L1Md_F2 LINE L1 -3901 1982 1873 3 714 20404 126 64 12 chr3 17019355 17021954 -142577829 + L1Md_F2 LINE L1 1987 4729 -1154 3 714 288 0 0 0 chr3 17021954 17021986 -142577797 + (CAAAA)n Simple_repeat Simple_repeat 3 34 0 3 714 20404 108 61 8 chr3 17021986 17023242 -142576541 + L1Md_F2 LINE L1 4730 6037 -529 3 714 806 104 70 13 chr3 17023244 17023337 -142576446 - L1_Mus3 LINE L1 0 6638 6541 3 714 203 0 37 0 chr3 17023337 17023364 -142576419 + (CCCCCA)n Simple_repeat Simple_repeat 3 30 0 3 714 806 104 70 13 chr3 17023364 17023426 -142576357 - L1_Mus3 LINE L1 -98 6540 6475 3 714 1533 75 0 0 chr3 17024378 17024578 -142575205 - L1_Mus1 LINE L1 -1 6566 6367 3 714 4220 63 8 69 chr3 17024580 17025246 -142574537 - L1_Mm LINE L1 -96 5787 5163 3 714 3615 74 16 8 chr3 17025247 17025737 -142574046 + L1Md_F2 LINE L1 6084 6577 -5 3 714 25 31 0 0 chr3 17025738 17025770 -142574013 + AT_rich Low_complexity Low_complexity 1 32 0 4 714 795 321 145 37 chr3 17025781 17026711 -142573072 - Lx8 LINE L1 -725 6748 5718 4 714 225 132 0 0 chr3 17026897 17026935 -142572848 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 4 714 941 303 46 69 chr3 17026936 17027657 -142572126 + Lx2A LINE L1 2196 2899 -2981 4 714 387 0 0 0 chr3 17027662 17027705 -142572078 + (CA)n Simple_repeat Simple_repeat 2 44 0 4 714 1353 222 52 6 chr3 17027717 17028062 -142571721 + Lx9 LINE L1 6741 7101 -543 4 714 1347 145 100 0 chr3 17028074 17028315 -142571468 + ORR1A2 LTR MaLR 61 325 -2 4 714 307 305 61 0 chr3 17028317 17028448 -142571335 + Lx9 LINE L1 7281 7419 -225 4 714 7315 50 7 0 chr3 17028521 17029469 -142570314 - L1Md_F2 LINE L1 -1 6581 5627 4 714 1057 81 0 0 chr3 17029459 17029608 -142570175 + L1_Mm LINE L1 5110 5258 -625 4 714 1790 221 152 49 chr3 17029700 17030494 -142569289 + RMER6C LTR ERVK 1 720 0 4 714 1122 115 0 0 chr3 17030674 17030848 -142568935 + (TTCCC)n Simple_repeat Simple_repeat 4 177 0 5 714 478 132 83 32 chr3 17030848 17031005 -142568778 + CT-rich Low_complexity Low_complexity 1 165 0 5 714 930 272 78 3 chr3 17031029 17031313 -142568470 - Lx6 LINE L1 -1 7459 7155 5 714 231 45 0 62 chr3 17031320 17031368 -142568415 + (CAAAAA)n Simple_repeat Simple_repeat 4 48 0 5 714 272 269 106 15 chr3 17031419 17031551 -142568232 - Lx2B LINE L1 -650 6350 6207 5 714 271 204 33 22 chr3 17031545 17031635 -142568148 + Lx4B LINE L1 6959 7049 -9 5 714 2188 169 61 26 chr3 17032112 17032316 -142567467 + Lx2A LINE L1 3823 4036 -1841 4 714 2976 39 0 0 chr3 17032316 17032671 -142567112 + L1Md_T LINE L1 6228 6582 0 5 714 2188 169 61 26 chr3 17032671 17032959 -142566824 + Lx2A LINE L1 4037 4332 -1545 4 714 6588 114 29 8 chr3 17032962 17034039 -142565744 + Lx LINE L1 5550 6648 -6 5 714 7722 161 11 13 chr3 17034033 17035709 -142564074 + Lx2A LINE L1 4326 6002 -1006 4 714 2715 32 16 68 chr3 17035709 17036074 -142563709 + ORR1A0 LTR MaLR 1 346 0 5 714 3475 124 7 11 chr3 17036074 17036226 -142563557 + Lx2A LINE L1 6003 6152 -856 4 714 932 173 0 0 chr3 17036223 17036396 -142563387 - L1_Mur1 LINE L1 -6136 846 674 5 714 733 266 3 83 chr3 17036446 17036758 -142563025 - L1_Mur1 LINE L1 -6667 315 29 5 714 12575 146 139 140 chr3 17036760 17038146 -142561637 - L1_Mur2 LINE L1 -510 5367 3917 6 714 5782 150 24 45 chr3 17038146 17039226 -142560557 - Lx2 LINE L1 -7 6990 5934 6 89 12575 146 139 140 chr3 17039226 17039709 -142560074 - L1_Mur2 LINE L1 -1961 3916 3678 6 715 446 0 0 0 chr3 17039709 17039762 -142560021 - 7SK RNA RNA -268 63 11 6 715 12575 146 139 140 chr3 17039762 17040250 -142559533 - L1_Mur2 LINE L1 -1961 3677 3437 6 715 8282 36 1 3 chr3 17040250 17041244 -142558539 + L1Md_F2 LINE L1 5587 6578 -4 6 715 12575 146 139 140 chr3 17041244 17042083 -142557700 - L1_Mur2 LINE L1 -2441 3436 2577 6 715 345 47 0 0 chr3 17042083 17042126 -142557657 + (TG)n Simple_repeat Simple_repeat 2 44 0 6 715 12575 145 147 119 chr3 17042126 17043072 -142556711 - L1_Mur2 LINE L1 -3301 2576 1174 6 715 6299 129 23 13 chr3 17043081 17044135 -142555648 - Lx3_Mus LINE L1 -9 7000 5937 6 715 6830 119 87 9 chr3 17044139 17045619 -142554164 - L1_Mur2 LINE L1 -157 5729 4406 6 715 7002 59 2 0 chr3 17045870 17047303 -142552480 - L1Md_F2 LINE L1 -201 6381 4946 6 715 12086 71 5 2 chr3 17047301 17049003 -142550780 + L1Md_F2 LINE L1 3310 5015 -868 6 715 333 302 35 103 chr3 17049042 17049061 -142550722 - B2_Mm2 SINE B2 -1 194 178 6 715 507 45 0 0 chr3 17049061 17049127 -142550656 + (TTTA)n Simple_repeat Simple_repeat 4 69 0 6 715 602 302 35 103 chr3 17049127 17049310 -142550473 - B3A SINE B2 -18 177 6 6 715 207 88 0 0 chr3 17049352 17049386 -142550397 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 7 715 257 321 95 0 chr3 17049426 17049510 -142550273 - B4A SINE B4 -152 140 49 7 715 6858 78 6 13 chr3 17050451 17051427 -142548356 + L1_Mus1 LINE L1 5599 6567 0 7 715 466 332 85 25 chr3 17052582 17052865 -142546918 + MER34A LTR ERV1 1 298 -244 7 715 534 174 0 0 chr3 17052872 17052981 -142546802 + (CA)n Simple_repeat Simple_repeat 2 110 0 7 715 2146 220 10 75 chr3 17052983 17053106 -142546677 - RMER1B Other Other -14 1052 940 7 715 414 0 0 0 chr3 17053106 17053152 -142546631 + (CA)n Simple_repeat Simple_repeat 2 47 0 7 715 2146 220 10 75 chr3 17053152 17053239 -142546544 - RMER1B Other Other -127 939 876 7 715 517 132 59 44 chr3 17053239 17053374 -142546409 - Lx2 LINE L1 -15 6982 6846 7 715 2146 220 10 75 chr3 17053374 17053765 -142546018 - RMER1B Other Other -191 875 489 7 715 1108 332 45 38 chr3 17054699 17055405 -142544378 - Lx8 LINE L1 -199 7274 6580 7 715 765 142 0 0 chr3 17055520 17055647 -142544136 + (GAA)n Simple_repeat Simple_repeat 3 129 0 7 715 363 208 0 0 chr3 17055793 17055865 -142543918 - Lx3B LINE L1 -1 6972 6901 8 715 24 0 0 0 chr3 17056568 17056592 -142543191 + AT_rich Low_complexity Low_complexity 1 24 0 8 715 441 54 0 0 chr3 17056719 17056775 -142543008 + (TTTTC)n Simple_repeat Simple_repeat 4 59 0 8 715 1213 130 6 5 chr3 17057301 17057582 -142542201 - L1_Mur1 LINE L1 -987 4899 4492 8 715 8185 5 0 0 chr3 17057924 17058842 -142540941 - L1Md_A LINE L1 0 5883 4966 8 715 5946 19 0 0 chr3 17058842 17059523 -142540260 + L1Md_A LINE L1 5902 6582 0 8 715 3835 109 19 104 chr3 17061560 17062380 -142537403 - RMER17A LTR ERVK 0 751 1 8 715 318 50 0 0 chr3 17062778 17062818 -142536965 + (TG)n Simple_repeat Simple_repeat 1 40 0 8 715 368 256 11 34 chr3 17063240 17063329 -142536454 - MLT1A1 LTR MaLR -295 113 27 8 715 315 106 0 0 chr3 17064867 17064914 -142534869 - ORR1B1 LTR MaLR -8 386 340 8 715 7561 125 7 2 chr3 17064914 17066162 -142533621 - L1_Mus3 LINE L1 0 6638 5385 8 715 6687 1 0 0 chr3 17066162 17066900 -142532883 + L1Md_A LINE L1 5845 6582 0 9 715 7561 117 2 0 chr3 17066900 17067504 -142532279 - L1_Mus3 LINE L1 -499 5384 4779 8 715 363 392 13 25 chr3 17067593 17067750 -142532033 - RSINE1 SINE B4 -6 159 5 9 715 503 350 25 0 chr3 17067768 17067965 -142531818 + MER2 DNA MER2_type 88 289 -56 9 715 314 266 0 11 chr3 17069294 17069389 -142530394 - L1M2 LINE L1 -1287 4856 4763 9 715 2319 275 16 40 chr3 17069461 17070159 -142529624 + Lx8 LINE L1 6645 7325 -148 9 715 207 0 0 0 chr3 17070221 17070244 -142529539 + (CA)n Simple_repeat Simple_repeat 2 24 0 9 715 431 299 9 9 chr3 17072629 17072737 -142527046 - RSINE1 SINE B4 0 165 58 9 715 539 296 41 50 chr3 17072773 17072994 -142526789 - L1M4 LINE L1 -357 5817 5602 9 715 2637 166 56 0 chr3 17072994 17073459 -142526324 - Lx4A LINE L1 0 7058 6568 9 715 539 296 41 50 chr3 17073459 17073575 -142526208 - L1M4 LINE L1 -573 5601 5483 9 715 222 91 0 0 chr3 17073577 17073610 -142526173 + (CTG)n Simple_repeat Simple_repeat 3 35 0 9 715 207 0 0 0 chr3 17073616 17073639 -142526144 + (TGG)n Simple_repeat Simple_repeat 1 23 0 1 715 270 313 110 73 chr3 17073639 17073884 -142525899 + MTE2a LTR MaLR 2 255 -124 1 715 289 22 43 22 chr3 17074380 17074426 -142525357 + (TTTTG)n Simple_repeat Simple_repeat 2 48 0 1 715 3726 87 17 17 chr3 17074466 17075002 -142524781 + Lx3_Mus LINE L1 6466 7001 -8 1 715 21 36 0 0 chr3 17076676 17076704 -142523079 + AT_rich Low_complexity Low_complexity 1 28 0 1 715 290 289 125 20 chr3 17076705 17076857 -142522926 - MTE2b LTR MaLR -11 368 201 1 715 21 0 0 0 chr3 17076975 17076996 -142522787 + AT_rich Low_complexity Low_complexity 1 21 0 1 715 820 206 163 5 chr3 17077811 17078001 -142521782 - RMER15 LTR ERVL 0 575 356 1 715 1324 251 128 33 chr3 17077981 17078487 -142521296 - RLTR26 LTR ERVK -31 611 31 1 715 1260 235 56 63 chr3 17078501 17078896 -142520887 - RMER15 LTR ERVL -180 395 4 1 715 315 413 26 62 chr3 17079073 17079300 -142520483 + ID_B1 SINE B4 1 219 -5 1 715 317 274 30 68 chr3 17079504 17079637 -142520146 - RMER10B LTR ERVL 0 398 271 1 715 30 0 0 0 chr3 17079940 17079970 -142519813 + AT_rich Low_complexity Low_complexity 1 30 0 1 715 765 216 22 0 chr3 17080332 17080471 -142519312 + B1_Mus1 SINE Alu 7 148 0 1 715 22 56 0 0 chr3 17080986 17081022 -142518761 + AT_rich Low_complexity Low_complexity 1 36 0 1 715 3698 171 32 25 chr3 17081235 17081658 -142518125 - RMER6A LTR ERVK 0 756 343 1 715 657 58 0 0 chr3 17081658 17081744 -142518039 + (TCC)n Simple_repeat Simple_repeat 2 87 0 1 715 3698 171 32 25 chr3 17081744 17082065 -142517718 - RMER6A LTR ERVK -414 342 7 1 715 540 116 0 0 chr3 17082068 17082154 -142517629 + (CA)n Simple_repeat Simple_repeat 2 87 0 1 715 17644 60 2 14 chr3 17082357 17085418 -142514365 + L1Md_A LINE L1 441 3459 -2424 1 715 9620 100 14 31 chr3 17085418 17087574 -142512209 + L1Md_Gf LINE L1 423 2488 -3398 1 715 8248 49 3 0 chr3 17087563 17088611 -142511172 + L1Md_Gf LINE L1 3151 4201 -1685 1 715 3417 49 52 28 chr3 17088611 17089075 -142510708 + IAPLTR2_Mm LTR ERVK 1 475 0 1 715 3523 89 17 32 chr3 17089077 17089909 -142509874 + IAPEz-int LTR ERVK 3 662 -5819 1 715 2608 73 0 3 chr3 17089909 17090252 -142509531 + IAPEz-int LTR ERVK 1359 1700 -4781 1 715 6567 50 11 11 chr3 17090247 17091074 -142508709 + IAPEz-int LTR ERVK 5653 6479 -2 1 715 2386 93 88 26 chr3 17091076 17091463 -142508320 + IAPLTR2_Mm LTR ERVK 1 411 0 1 715 11093 41 14 1 chr3 17091463 17092838 -142506945 + L1Md_F2 LINE L1 4193 5586 -297 1 715 7850 51 2 15 chr3 17092838 17093846 -142505937 + L1Md_F2 LINE L1 5587 6581 -1 1 715 31 92 0 0 chr3 17093886 17093973 -142505810 + AT_rich Low_complexity Low_complexity 1 87 0 1 715 1271 213 47 50 chr3 17094020 17094381 -142505402 + Lx2B LINE L1 6630 6989 -11 1 715 285 89 0 0 chr3 17094577 17094622 -142505161 + (TCTCTG)n Simple_repeat Simple_repeat 4 48 0 1 715 310 280 74 25 chr3 17094920 17095041 -142504742 - Lx9 LINE L1 -272 7372 7246 1 715 32669 88 5 2 chr3 17095160 17096985 -142502798 - L1Md_F2 LINE L1 -16 6566 4738 1 715 564 15 0 0 chr3 17096985 17097050 -142502733 + (TTTTG)n Simple_repeat Simple_repeat 2 66 0 1 715 32669 99 16 1 chr3 17097050 17101362 -142498421 - L1Md_F2 LINE L1 -1146 4737 355 1 715 411 296 53 60 chr3 17101368 17101501 -142498282 + B1_Mur2 SINE Alu 18 149 0 1 715 423 315 80 12 chr3 17102537 17102776 -142497007 + MIR SINE MIR 6 262 0 1 715 1739 108 8 0 chr3 17103796 17104054 -142495729 - L1_Mus4 LINE L1 -5 6631 6372 1 715 2857 111 12 0 chr3 17104054 17104477 -142495306 + L1_Mus4 LINE L1 5950 6377 -259 1 715 5829 118 14 35 chr3 17104886 17105268 -142494515 - L1_Mm LINE L1 -231 5652 5299 1 715 2653 88 3 13 chr3 17105268 17105646 -142494137 - L1_Mus1 LINE L1 0 6567 6194 1 715 5829 118 14 35 chr3 17105646 17106224 -142493559 - L1_Mm LINE L1 -585 5298 4713 1 715 1129 101 0 17 chr3 17107736 17107917 -142491866 + (GAGAA)n Simple_repeat Simple_repeat 3 180 0 1 715 1950 214 52 31 chr3 17108291 17108807 -142490976 + RLTR11A2 LTR ERVK 1 527 0 1 715 33 66 0 0 chr3 17110827 17110888 -142488895 + AT_rich Low_complexity Low_complexity 1 61 0 1 715 26 0 0 0 chr3 17112279 17112305 -142487478 + AT_rich Low_complexity Low_complexity 1 26 0 1 715 222 37 0 0 chr3 17112433 17112460 -142487323 + (TTA)n Simple_repeat Simple_repeat 1 27 0 1 715 21 36 0 0 chr3 17113811 17113839 -142485944 + AT_rich Low_complexity Low_complexity 1 28 0 1 715 225 94 0 0 chr3 17117147 17117179 -142482604 + (TTCA)n Simple_repeat Simple_repeat 4 35 0 1 715 27 29 0 0 chr3 17117563 17117597 -142482186 + AT_rich Low_complexity Low_complexity 1 34 0 1 715 207 0 0 0 chr3 17119292 17119315 -142480468 + (CA)n Simple_repeat Simple_repeat 2 24 0 1 715 306 0 0 0 chr3 17119315 17119348 -142480435 + (TA)n Simple_repeat Simple_repeat 2 35 0 1 715 1757 215 66 52 chr3 17119947 17120374 -142479409 - Lx5 LINE L1 -483 6567 6135 1 715 35331 35 0 0 chr3 17120414 17125756 -142474027 + L1Md_T LINE L1 150 5589 -297 1 715 8946 6 0 0 chr3 17125757 17126752 -142473031 + L1Md_T LINE L1 5591 6585 0 1 715 3505 172 58 0 chr3 17126765 17127624 -142472159 - Lx5 LINE L1 -962 6088 5171 1 715 50 0 0 0 chr3 17127701 17127751 -142472032 + AT_rich Low_complexity Low_complexity 1 50 0 1 715 21 36 0 0 chr3 17127909 17127937 -142471846 + AT_rich Low_complexity Low_complexity 1 28 0 1 715 2236 132 0 0 chr3 17127944 17128263 -142471520 - ORR1A2 LTR MaLR -8 319 1 1 715 581 256 71 50 chr3 17128694 17129066 -142470717 - L1MA8 LINE L1 -23 6289 5902 1 715 265 277 75 41 chr3 17129082 17129229 -142470554 + L1MA8 LINE L1 6081 6232 -59 1 715 253 88 35 17 chr3 17132405 17132463 -142467320 + (CAAA)n Simple_repeat Simple_repeat 2 60 0 1 715 878 359 33 30 chr3 17133483 17134117 -142465666 - Lx9 LINE L1 0 7473 6800 1 715 254 125 21 0 chr3 17134121 17134169 -142465614 + (TA)n Simple_repeat Simple_repeat 1 49 0 1 715 216 86 0 0 chr3 17134211 17134246 -142465537 + (TAAAAA)n Simple_repeat Simple_repeat 3 37 0 1 715 2028 125 22 56 chr3 17134269 17134625 -142465158 - L1_Mus4 LINE L1 -295 5588 5245 1 715 7491 89 10 11 chr3 17134625 17135663 -142464120 + L1_Mus4 LINE L1 5593 6629 -7 1 715 1533 304 63 17 chr3 17135666 17136202 -142463581 - Lx9 LINE L1 -726 6918 6358 1 715 384 71 0 0 chr3 17136221 17136277 -142463506 + (CA)n Simple_repeat Simple_repeat 2 57 0 1 715 450 0 0 0 chr3 17136277 17136327 -142463456 + (TA)n Simple_repeat Simple_repeat 1 50 0 1 715 367 326 10 64 chr3 17136448 17136651 -142463132 - Lx9 LINE L1 -1618 6026 5835 1 715 1254 296 44 30 chr3 17137113 17137615 -142462168 + Lx9 LINE L1 6934 7442 -202 1 715 29 60 0 0 chr3 17137615 17137665 -142462118 + AT_rich Low_complexity Low_complexity 1 50 0 1 715 592 284 21 79 chr3 17138620 17138861 -142460922 + RLTR9A LTR ERVK 142 368 0 1 715 318 50 0 0 chr3 17139174 17139214 -142460569 + (TAAAA)n Simple_repeat Simple_repeat 1 40 0 1 715 253 43 65 0 chr3 17139264 17139310 -142460473 + (CAGAGA)n Simple_repeat Simple_repeat 3 51 0 1 715 1141 159 91 126 chr3 17139310 17139684 -142460099 + RLTR45-int LTR ERVK 2080 2440 -4804 1 715 3014 83 37 0 chr3 17139693 17140256 -142459527 - L1_Mus2 LINE L1 -547 6019 5432 1 715 3831 93 2 8 chr3 17140256 17140777 -142459006 + L1_Mus2 LINE L1 6046 6563 -3 1 715 3780 152 36 19 chr3 17140798 17141547 -142458236 + ETnERV2-int LTR ERVK 1424 2185 -5221 1 715 1209 48 0 0 chr3 17141659 17141805 -142457978 + B1_Mus2 SINE Alu 2 147 0 1 715 4070 242 88 50 chr3 17141817 17142362 -142457421 + ETnERV2-int LTR ERVK 2189 2574 -4832 1 715 756 0 0 0 chr3 17142362 17142446 -142457337 + (CCTTG)n Simple_repeat Simple_repeat 3 86 0 1 715 4070 214 94 58 chr3 17142446 17143298 -142456485 + ETnERV2-int LTR ERVK 2575 3497 -3909 1 715 675 236 43 0 chr3 17143483 17143623 -142456160 - Lx9 LINE L1 -345 7299 7154 1 715 541 236 0 89 chr3 17143808 17143966 -142455817 + B1_Mus2 SINE Alu 2 145 -2 1 715 288 130 0 0 chr3 17143978 17144024 -142455759 + (TAA)n Simple_repeat Simple_repeat 2 47 0 1 715 302 396 88 30 chr3 17144147 17144545 -142455238 - MLT1C LTR MaLR -10 457 37 1 715 1366 173 153 19 chr3 17144557 17144864 -142454919 - ORR1B1 LTR MaLR -8 386 39 1 715 22 94 0 0 chr3 17145211 17145275 -142454508 + AT_rich Low_complexity Low_complexity 1 64 0 1 715 30 45 0 0 chr3 17145417 17145461 -142454322 + AT_rich Low_complexity Low_complexity 1 44 0 1 715 21 0 0 0 chr3 17145498 17145519 -142454264 + AT_rich Low_complexity Low_complexity 1 21 0 1 715 1795 288 62 11 chr3 17145948 17146499 -142453284 + Lx9 LINE L1 6581 7159 -485 1 715 519 249 81 9 chr3 17146563 17146786 -142452997 + Lx9 LINE L1 7404 7642 -2 1 715 32 26 0 0 chr3 17146836 17146875 -142452908 + AT_rich Low_complexity Low_complexity 1 39 0 1 715 236 100 25 0 chr3 17146891 17146931 -142452852 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 715 443 338 105 36 chr3 17147014 17147371 -142452412 + L1M5 LINE L1 2984 3359 -2787 1 715 324 0 0 0 chr3 17147371 17147407 -142452376 + (TA)n Simple_repeat Simple_repeat 2 37 0 1 715 443 338 105 36 chr3 17147407 17147460 -142452323 + L1M5 LINE L1 3360 3421 -2725 1 715 7342 132 35 47 chr3 17147524 17147943 -142451840 - MusHAL1 LINE L1 -526 2186 1793 1 715 789 102 26 26 chr3 17147943 17148094 -142451689 - Lx2 LINE L1 -7 6990 6840 1 715 7342 132 35 47 chr3 17148094 17148444 -142451339 - MusHAL1 LINE L1 -920 1792 1452 1 715 495 0 0 0 chr3 17148444 17148499 -142451284 + (TA)n Simple_repeat Simple_repeat 2 56 0 1 715 7342 132 35 47 chr3 17148499 17149144 -142450639 - MusHAL1 LINE L1 -1261 1451 787 1 715 323 77 0 0 chr3 17149145 17149197 -142450586 + Lx2 LINE L1 6946 6997 0 1 715 3558 257 41 28 chr3 17149499 17150662 -142449121 - RMER1A Other Other 0 1030 3 1 715 396 0 0 0 chr3 17150662 17150706 -142449077 + (CA)n Simple_repeat Simple_repeat 2 45 0 1 715 871 307 224 40 chr3 17150706 17151127 -142448656 - RMER1B Other Other -541 525 1 1 715 201 74 0 0 chr3 17151273 17151300 -142448483 + (ATTTG)n Simple_repeat Simple_repeat 2 28 0 1 715 675 329 29 14 chr3 17151748 17151955 -142447828 - B3 SINE B2 -6 210 1 1 715 324 120 0 0 chr3 17152164 17152214 -142447569 + (TTTG)n Simple_repeat Simple_repeat 4 53 0 1 715 1536 236 79 24 chr3 17152247 17152663 -142447120 - RMER10A LTR ERVL 0 442 4 1 715 5043 236 45 27 chr3 17152668 17154668 -142445115 - L1_Mur3 LINE L1 -3077 2803 767 1 715 2563 180 40 39 chr3 17154656 17155712 -142444071 - L1_Mur1 LINE L1 -4513 1373 13 1 715 252 222 16 0 chr3 17155711 17155774 -142444009 - Lx7 LINE L1 -1949 5747 5684 1 715 862 229 36 96 chr3 17155779 17156194 -142443589 - L1_Mur3 LINE L1 -2445 3435 3046 1 715 1843 288 125 19 chr3 17156230 17157056 -142442727 - Lx8 LINE L1 -339 7134 6222 1 715 613 292 42 66 chr3 17160395 17160681 -142439102 + Lx8 LINE L1 7189 7467 -6 1 715 1382 23 1 2 chr3 17160926 17161104 -142438679 - Lx7 LINE L1 -284 5596 5420 1 715 9017 2 0 0 chr3 17161104 17162099 -142437684 + L1Md_A LINE L1 5588 6582 0 1 715 316 330 195 11 chr3 17162376 17162681 -142437102 + L1ME1 LINE L1 5572 5925 -239 1 715 222 37 0 0 chr3 17163347 17163374 -142436409 + (A)n Simple_repeat Simple_repeat 1 27 0 1 715 1049 300 72 92 chr3 17163487 17164397 -142435386 - L1MEc LINE L1 -4708 1707 740 1 715 251 333 118 22 chr3 17164445 17164580 -142435203 - B3 SINE B2 -68 148 1 2 715 2106 163 40 58 chr3 17164912 17165381 -142434402 - RMER6B LTR ERVK 0 461 1 2 715 1226 309 45 10 chr3 17165541 17165937 -142433846 - MTD LTR MaLR -7 412 3 2 715 589 217 61 46 chr3 17165942 17166163 -142433620 - MTD-int LTR MaLR -3 1255 905 2 715 31 26 0 0 chr3 17166679 17166717 -142433066 + AT_rich Low_complexity Low_complexity 1 38 0 2 715 1145 40 29 11 chr3 17166763 17166938 -142432845 + (TCTA)n Simple_repeat Simple_repeat 1 178 0 2 715 208 139 0 0 chr3 17167046 17167082 -142432701 + (T)n Simple_repeat Simple_repeat 1 36 0 2 715 531 310 91 18 chr3 17167091 17167311 -142432472 - Lx8 LINE L1 -597 6876 6641 2 715 6712 196 43 105 chr3 17167329 17169400 -142430383 - ORR1B1-int LTR MaLR 0 1963 8 2 716 423 0 0 0 chr3 17171237 17171284 -142428499 + (TAA)n Simple_repeat Simple_repeat 2 48 0 2 716 548 245 35 41 chr3 17171292 17171437 -142428346 - ORR1B1-int LTR MaLR -1579 384 241 2 716 461 202 125 0 chr3 17171441 17171545 -142428238 - ORR1B1-int LTR MaLR -1390 119 3 2 716 1412 199 15 82 chr3 17171547 17171895 -142427888 - ORR1B1 LTR MaLR -8 386 42 2 716 654 304 35 30 chr3 17171910 17172298 -142427485 - Lx8 LINE L1 -853 6620 6192 2 716 2889 211 50 40 chr3 17172345 17173018 -142426765 - Lx5 LINE L1 0 7050 6371 2 716 2832 215 88 8 chr3 17173023 17173670 -142426113 + Lx5 LINE L1 5679 6377 -673 2 716 306 374 0 0 chr3 17174798 17174913 -142424870 + L1_Mur3 LINE L1 481 595 -7117 2 716 442 290 36 14 chr3 17174916 17175056 -142424727 - L1_Mur3 LINE L1 -7542 170 28 2 716 1362 117 25 0 chr3 17175076 17175272 -142424511 + L1_Mus3 LINE L1 6327 6527 -111 2 716 18417 117 60 36 chr3 17175270 17175940 -142423843 + L1_Mus2 LINE L1 2611 3269 -2614 2 716 1025 103 7 0 chr3 17175940 17176086 -142423697 + B1_Mus1 SINE Alu 2 148 0 2 716 18417 109 44 27 chr3 17176086 17179290 -142420493 + L1_Mus2 LINE L1 3270 6565 -1 2 716 1285 62 6 11 chr3 17179558 17179739 -142420044 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 2 716 22 35 0 0 chr3 17179921 17179950 -142419833 + AT_rich Low_complexity Low_complexity 1 29 0 2 716 22 35 0 0 chr3 17180507 17180536 -142419247 + AT_rich Low_complexity Low_complexity 1 29 0 2 716 24 32 0 0 chr3 17180986 17181017 -142418766 + AT_rich Low_complexity Low_complexity 1 31 0 2 716 21 36 0 0 chr3 17181053 17181081 -142418702 + AT_rich Low_complexity Low_complexity 1 28 0 2 716 193 262 91 15 chr3 17181775 17181841 -142417942 + MIRb SINE MIR 186 256 -12 2 716 216 217 16 32 chr3 17184350 17184412 -142415371 + T-rich Low_complexity Low_complexity 2 62 0 2 716 336 143 0 0 chr3 17184497 17184553 -142415230 + (A)n Simple_repeat Simple_repeat 1 56 0 2 716 495 352 44 6 chr3 17185545 17185728 -142414055 + B4A SINE B4 103 292 0 2 716 5111 54 5 19 chr3 17185988 17186654 -142413129 - L1Md_F2 LINE L1 0 6582 5927 2 716 216 0 0 0 chr3 17186945 17186969 -142412814 + (TTAA)n Simple_repeat Simple_repeat 3 26 0 2 716 3162 189 22 53 chr3 17186983 17187526 -142412257 - Lx4B LINE L1 -38 7020 6496 2 716 189 0 0 0 chr3 17187526 17187547 -142412236 + (TTA)n Simple_repeat Simple_repeat 1 21 0 2 716 4873 145 9 1 chr3 17187548 17188321 -142411462 - Lx3C LINE L1 -2 6974 6196 2 716 3162 189 22 53 chr3 17188321 17188441 -142411342 - Lx4B LINE L1 -563 6495 6375 2 716 1368 124 0 51 chr3 17188450 17188687 -142411096 + L1Md_F2 LINE L1 6358 6582 0 2 716 294 217 0 0 chr3 17188818 17188938 -142410845 + CT-rich Low_complexity Low_complexity 2 121 0 2 716 3588 133 7 7 chr3 17189047 17189606 -142410177 + Lx LINE L1 6090 6648 -6 2 716 271 249 85 36 chr3 17190237 17190356 -142409427 - MER102b DNA MER1_type -184 157 28 2 716 280 359 27 38 chr3 17190538 17190799 -142408984 + L1M6 LINE L1 533 790 -5706 2 716 3234 46 5 0 chr3 17191272 17191666 -142408117 - MTA_Mm LTR MaLR 0 396 1 2 716 8602 59 5 0 chr3 17191666 17192759 -142407024 - MTA_Mm-int LTR MaLR 0 1098 1 2 716 3260 51 2 0 chr3 17192759 17193154 -142406629 - MTA_Mm LTR MaLR 0 396 1 2 716 307 291 109 17 chr3 17193221 17193340 -142406443 - MER102b DNA MER1_type -184 157 28 2 716 376 316 60 0 chr3 17193666 17193783 -142406000 - RSINE1 SINE B4 -38 127 4 2 716 38360 7 0 0 chr3 17193799 17199034 -142400749 + L1Md_A LINE L1 351 5586 -297 2 716 8991 4 0 0 chr3 17199034 17200030 -142399753 + L1Md_A LINE L1 5587 6582 0 2 716 572 181 0 9 chr3 17200218 17200324 -142399459 + L1VL1 LINE L1 187 291 -6131 2 716 28928 88 5 44 chr3 17200317 17203353 -142396430 + L1Md_Gf LINE L1 792 3723 -2163 2 716 414 0 0 0 chr3 17203353 17203399 -142396384 + (TA)n Simple_repeat Simple_repeat 1 46 0 2 716 28928 87 5 49 chr3 17203399 17205174 -142394609 + L1Md_Gf LINE L1 3724 5503 -383 2 716 358 335 10 57 chr3 17205174 17205260 -142394523 + ID_B1 SINE B4 17 99 -125 2 716 7650 65 5 5 chr3 17205260 17206254 -142393529 + L1Md_F2 LINE L1 5588 6581 -1 2 716 358 335 10 57 chr3 17206254 17206269 -142393514 + ID_B1 SINE B4 100 215 -9 2 716 710 121 0 33 chr3 17206269 17206376 -142393407 + B1_Mm SINE Alu 32 138 -9 2 716 317 32 47 31 chr3 17206376 17206440 -142393343 + (CAAA)n Simple_repeat Simple_repeat 2 66 0 2 716 710 121 0 33 chr3 17206440 17206452 -142393331 + B1_Mm SINE Alu 139 147 0 2 716 296 156 62 75 chr3 17206577 17206723 -142393060 + Lx9 LINE L1 7481 7624 -20 2 716 616 331 12 0 chr3 17206740 17206898 -142392885 + B3 SINE B2 1 160 -56 2 716 459 48 0 0 chr3 17206898 17206960 -142392823 + (CA)n Simple_repeat Simple_repeat 1 62 0 2 716 24 0 0 0 chr3 17207675 17207699 -142392084 + AT_rich Low_complexity Low_complexity 1 24 0 2 716 1910 227 248 2 chr3 17208241 17208798 -142390985 - Lx2A1 LINE L1 0 7008 6315 2 716 1536 166 24 3 chr3 17208788 17209079 -142390704 + L1_Mus4 LINE L1 3944 4240 -1637 2 716 4993 156 0 2 chr3 17209068 17209861 -142389922 - Lx LINE L1 -205 6449 5659 2 716 7655 157 23 5 chr3 17209869 17211268 -142388515 + Lx LINE L1 4211 5642 -994 2 716 1377 175 4 4 chr3 17211273 17211520 -142388263 + L1_Mur2 LINE L1 4923 5169 -708 2 716 405 237 47 12 chr3 17212566 17212737 -142387046 + (TA)n Simple_repeat Simple_repeat 1 177 0 2 716 347 213 57 29 chr3 17212649 17212789 -142386994 + (TATATG)n Simple_repeat Simple_repeat 6 149 0 2 716 350 136 63 25 chr3 17212796 17212955 -142386828 + (TTATA)n Simple_repeat Simple_repeat 5 169 0 2 716 1568 318 45 16 chr3 17213525 17214082 -142385701 - Lx5 LINE L1 0 7050 6478 2 716 1593 123 12 12 chr3 17214129 17214383 -142385400 - Lx2 LINE L1 -1 6996 6743 2 716 2876 134 21 0 chr3 17214383 17214817 -142384966 - Lx2 LINE L1 -457 6540 6098 2 716 666 325 59 4 chr3 17215067 17215305 -142384478 - B4A SINE B4 -41 251 1 2 716 1196 64 6 0 chr3 17216555 17216712 -142383071 - B2_Mm2 SINE B2 -37 158 1 2 716 24 32 0 0 chr3 17217455 17217486 -142382297 + AT_rich Low_complexity Low_complexity 1 31 0 2 716 26 0 0 0 chr3 17218519 17218545 -142381238 + AT_rich Low_complexity Low_complexity 1 26 0 2 716 189 0 0 0 chr3 17221512 17221533 -142378250 + (T)n Simple_repeat Simple_repeat 1 21 0 2 716 189 0 0 0 chr3 17223379 17223400 -142376383 + (A)n Simple_repeat Simple_repeat 1 21 0 2 716 198 0 0 0 chr3 17225799 17225821 -142373962 + (TCTA)n Simple_repeat Simple_repeat 4 25 0 2 716 23 33 0 0 chr3 17225821 17225851 -142373932 + AT_rich Low_complexity Low_complexity 1 30 0 2 716 348 64 0 0 chr3 17226407 17226454 -142373329 + (TG)n Simple_repeat Simple_repeat 2 48 0 2 716 216 97 0 0 chr3 17226567 17226598 -142373185 + (A)n Simple_repeat Simple_repeat 1 31 0 2 716 25 0 0 0 chr3 17227337 17227362 -142372421 + AT_rich Low_complexity Low_complexity 1 25 0 2 716 21 36 0 0 chr3 17228426 17228454 -142371329 + AT_rich Low_complexity Low_complexity 1 28 0 2 716 315 0 0 0 chr3 17229731 17229766 -142370017 + (TC)n Simple_repeat Simple_repeat 1 35 0 2 716 25 65 0 0 chr3 17231546 17231592 -142368191 + AT_rich Low_complexity Low_complexity 1 46 0 2 716 279 79 0 0 chr3 17233014 17233052 -142366731 + (CA)n Simple_repeat Simple_repeat 1 38 0 2 716 225 378 0 13 chr3 17233200 17233275 -142366508 + RLTR41 LTR ERV1 34 107 -339 2 716 22 80 0 0 chr3 17233699 17233749 -142366034 + AT_rich Low_complexity Low_complexity 1 50 0 2 716 240 143 0 0 chr3 17233922 17233964 -142365819 + (CA)n Simple_repeat Simple_repeat 1 42 0 2 716 290 67 22 0 chr3 17234081 17234126 -142365657 + (TTCA)n Simple_repeat Simple_repeat 3 48 0 2 716 1578 236 46 39 chr3 17234128 17234516 -142365267 - Lx6 LINE L1 -169 7291 6901 2 716 579 15 0 0 chr3 17234516 17234584 -142365199 + (TA)n Simple_repeat Simple_repeat 1 68 0 2 716 23 33 0 0 chr3 17235622 17235652 -142364131 + AT_rich Low_complexity Low_complexity 1 30 0 2 716 402 115 0 0 chr3 17235837 17235898 -142363885 + (TG)n Simple_repeat Simple_repeat 1 61 0 2 716 3581 125 3 12 chr3 17236340 17236907 -142362876 + L1_Mus3 LINE L1 6076 6637 -1 2 716 263 268 0 10 chr3 17236992 17237090 -142362693 + (TATATG)n Simple_repeat Simple_repeat 6 102 0 2 716 237 65 0 0 chr3 17237096 17237127 -142362656 + (CAGA)n Simple_repeat Simple_repeat 2 32 0 2 716 21 36 0 0 chr3 17237511 17237539 -142362244 + AT_rich Low_complexity Low_complexity 1 28 0 2 716 26 0 0 0 chr3 17237562 17237588 -142362195 + AT_rich Low_complexity Low_complexity 1 26 0 2 716 1137 62 0 0 chr3 17237588 17237732 -142362051 + B1_Mm SINE Alu 1 144 -3 2 716 243 0 0 0 chr3 17237732 17237759 -142362024 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2 716 22 0 0 30 chr3 17237896 17237911 -142361872 + AT_rich Low_complexity Low_complexity 1 15 0 2 716 2239 78 120 11 chr3 17237911 17238261 -142361522 + RLTR10 LTR ERVK 3 390 0 2 716 22 0 0 30 chr3 17238261 17238278 -142361505 + AT_rich Low_complexity Low_complexity 1 17 0 2 716 222 152 65 0 chr3 17238876 17238968 -142360815 + (TA)n Simple_repeat Simple_repeat 1 98 0 2 716 333 0 0 0 chr3 17239966 17240003 -142359780 + (TA)n Simple_repeat Simple_repeat 2 38 0 2 716 1039 99 7 0 chr3 17240011 17240153 -142359630 - B1_Mus2 SINE Alu -4 143 1 2 716 21 57 0 0 chr3 17240178 17240213 -142359570 + AT_rich Low_complexity Low_complexity 1 35 0 2 716 21 0 0 0 chr3 17240288 17240309 -142359474 + AT_rich Low_complexity Low_complexity 1 21 0 2 716 333 351 66 18 chr3 17240324 17240597 -142359186 + B4A SINE B4 1 286 -6 2 716 459 0 0 0 chr3 17240905 17240956 -142358827 + (TA)n Simple_repeat Simple_repeat 1 51 0 2 716 329 339 63 0 chr3 17240970 17241097 -142358686 + RSINE1 SINE B4 12 146 -19 2 716 396 71 0 0 chr3 17241106 17241162 -142358621 + (CA)n Simple_repeat Simple_repeat 1 56 0 2 716 921 177 15 19 chr3 17241167 17241428 -142358355 + GA-rich Low_complexity Low_complexity 1 259 0 2 716 268 24 49 0 chr3 17242188 17242229 -142357554 + (TTTA)n Simple_repeat Simple_repeat 4 46 0 3 716 291 98 20 0 chr3 17242521 17242572 -142357211 + Lx2 LINE L1 6935 6986 -11 3 716 1167 117 0 0 chr3 17242584 17242764 -142357019 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 3 716 228 67 0 0 chr3 17242767 17242797 -142356986 + (CAAAG)n Simple_repeat Simple_repeat 3 32 0 3 716 266 358 58 21 chr3 17244646 17244837 -142354946 + Lx9 LINE L1 7158 7355 -289 3 716 22 0 0 0 chr3 17245940 17245962 -142353821 + AT_rich Low_complexity Low_complexity 1 22 0 3 716 371 311 40 40 chr3 17246501 17246625 -142353158 + B1F SINE Alu 3 126 -23 3 716 22 35 0 0 chr3 17246638 17246667 -142353116 + AT_rich Low_complexity Low_complexity 1 29 0 3 716 22 0 0 0 chr3 17246763 17246785 -142352998 + AT_rich Low_complexity Low_complexity 1 22 0 3 716 21 0 0 0 chr3 17246917 17246938 -142352845 + AT_rich Low_complexity Low_complexity 1 21 0 3 716 2542 234 41 79 chr3 17246949 17248076 -142351707 + L1Md_F LINE L1 163 1099 -5438 3 716 862 156 0 1 chr3 17248122 17248304 -142351479 + L1Md_F LINE L1 1000 1180 -5380 3 716 22820 132 9 13 chr3 17248304 17249464 -142350319 + L1_Mus2 LINE L1 2124 3250 -2633 3 716 1104 114 0 0 chr3 17249464 17249631 -142350152 + (GAAA)n Simple_repeat Simple_repeat 2 168 0 3 716 22820 132 9 13 chr3 17249631 17249859 -142349924 + L1_Mus2 LINE L1 3251 3476 -2407 3 716 324 0 0 0 chr3 17249859 17249895 -142349888 + (CAA)n Simple_repeat Simple_repeat 1 36 0 3 716 22820 122 16 9 chr3 17249895 17252929 -142346854 + L1_Mus2 LINE L1 3477 6562 -4 3 716 25 0 0 0 chr3 17252929 17252954 -142346829 + AT_rich Low_complexity Low_complexity 1 25 0 3 716 399 343 24 32 chr3 17253710 17253960 -142345823 - Lx8 LINE L1 -384 7089 6842 3 716 369 87 0 0 chr3 17253984 17254030 -142345753 + L1Md_F2 LINE L1 5541 5586 -297 3 716 8188 39 1 11 chr3 17254030 17255036 -142344747 + L1Md_F2 LINE L1 5587 6582 0 3 716 1212 330 42 5 chr3 17255048 17255495 -142344288 - Lx8 LINE L1 -625 6848 6385 3 716 429 314 91 16 chr3 17255531 17255774 -142344009 + Lx8 LINE L1 7154 7414 -59 3 716 195 246 0 0 chr3 17255783 17255840 -142343943 + GA-rich Low_complexity Low_complexity 2 58 0 3 716 256 274 79 24 chr3 17255840 17255967 -142343816 + Lx8 LINE L1 7334 7467 -6 3 716 202 244 26 0 chr3 17257582 17257660 -142342123 + (TA)n Simple_repeat Simple_repeat 1 80 0 3 716 2701 56 0 0 chr3 17257660 17257998 -142341785 + ORR1A1 LTR MaLR 1 338 -8 3 716 371 273 24 18 chr3 17258029 17258193 -142341590 - Lx9 LINE L1 -121 7523 7359 3 716 233 315 45 18 chr3 17258847 17258957 -142340826 + MER57C2 LTR ERV1 318 430 -4 3 716 1027 84 0 19 chr3 17259071 17259229 -142340554 + (GAAA)n Simple_repeat Simple_repeat 1 155 0 3 716 7976 195 36 105 chr3 17262064 17262957 -142336826 + Lx LINE L1 1132 2019 -3867 3 716 441 0 0 0 chr3 17262957 17263006 -142336777 + (GA)n Simple_repeat Simple_repeat 1 49 0 3 716 7976 224 44 137 chr3 17263006 17263304 -142336479 + Lx LINE L1 2020 2264 -3622 3 716 3418 61 2 11 chr3 17263304 17263749 -142336034 + L1Md_F2 LINE L1 6142 6582 0 3 716 9797 168 52 48 chr3 17263749 17263899 -142335884 + Lx LINE L1 2265 2420 -3466 3 716 2544 45 3 37 chr3 17263899 17264249 -142335534 + RLTR10 LTR ERVK 1 338 -52 3 716 9797 168 52 48 chr3 17264249 17265270 -142334513 + Lx LINE L1 2421 3488 -2398 3 716 243 0 0 0 chr3 17265270 17265297 -142334486 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3 716 9797 147 38 10 chr3 17265297 17267253 -142332530 + Lx LINE L1 3480 6646 -8 3 716 7977 168 58 5 chr3 17267270 17269071 -142330712 + Lx4A LINE L1 4306 6191 -867 3 716 3700 97 30 0 chr3 17269071 17269598 -142330185 + L1_Mus1 LINE L1 6024 6566 -1 3 716 6868 175 85 8 chr3 17269598 17270356 -142329427 + Lx4A LINE L1 6192 7047 -11 3 716 281 266 32 0 chr3 17270866 17270960 -142328823 + (TATG)n Simple_repeat Simple_repeat 4 100 0 3 716 364 316 31 0 chr3 17271216 17271314 -142328469 - PB1D10 SINE Alu -14 103 3 3 716 2407 44 10 0 chr3 17271566 17271860 -142327923 - L1Md_F2 LINE L1 0 6582 6286 3 716 609 227 12 6 chr3 17273068 17273232 -142326551 - RMER1A Other Other -1 1029 865 3 716 1050 139 0 0 chr3 17273217 17273382 -142326401 - L1_Mm LINE L1 -791 5092 4928 3 716 5921 79 0 3 chr3 17273383 17274190 -142325593 + L1_Mus1 LINE L1 5780 6567 0 3 716 233 0 62 0 chr3 17274217 17274249 -142325534 + (CAAA)n Simple_repeat Simple_repeat 1 34 0 3 716 5841 163 31 20 chr3 17274249 17275389 -142324394 + L1Md_T LINE L1 3309 4460 -1420 3 716 20422 128 20 20 chr3 17275410 17278866 -142320917 + Lx LINE L1 395 3862 -2021 3 716 504 45 0 0 chr3 17278866 17278933 -142320850 + (CA)n Simple_repeat Simple_repeat 2 68 0 3 716 20422 168 34 11 chr3 17278933 17281649 -142318134 + Lx LINE L1 3863 6652 -2 3 716 1069 135 0 6 chr3 17281665 17281836 -142317947 + L1_Mm LINE L1 4445 4614 -1269 3 716 35306 75 6 3 chr3 17281836 17288834 -142310949 + L1Md_T LINE L1 236 5589 -297 3 716 8990 5 0 0 chr3 17288834 17289830 -142309953 + L1Md_T LINE L1 5590 6585 0 3 716 1115 235 52 26 chr3 17289844 17290150 -142309633 + Lx3C LINE L1 6661 6974 -2 3 716 24 53 0 0 chr3 17290150 17290188 -142309595 + AT_rich Low_complexity Low_complexity 1 38 0 3 716 24 53 0 0 chr3 17290230 17290268 -142309515 + AT_rich Low_complexity Low_complexity 1 38 0 3 716 3970 133 20 2 chr3 17290268 17290877 -142308906 - Lx2 LINE L1 -13 6984 6365 3 716 9190 137 68 8 chr3 17290888 17293773 -142306010 + Lx3_Mus LINE L1 3927 7005 -4 3 716 1170 75 0 0 chr3 17293780 17293926 -142305857 + B1_Mm SINE Alu 1 146 -1 3 716 220 216 0 0 chr3 17293928 17293979 -142305804 + A-rich Low_complexity Low_complexity 1 51 0 3 716 26 0 0 0 chr3 17294006 17294032 -142305751 + AT_rich Low_complexity Low_complexity 1 26 0 3 716 217 298 141 12 chr3 17294581 17294666 -142305117 + PB1D10 SINE Alu 5 100 -17 3 716 180 0 0 0 chr3 17294670 17294690 -142305093 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 3 716 235 268 68 68 chr3 17294767 17294959 -142304824 + L1M4 LINE L1 3028 3219 -2927 3 716 771 112 7 29 chr3 17294967 17295105 -142304678 - L1_Mus2 LINE L1 -1 6565 6431 3 716 479 102 0 11 chr3 17295666 17295755 -142304028 + (TTTTG)n Simple_repeat Simple_repeat 3 90 0 3 716 210 26 77 0 chr3 17295822 17295861 -142303922 + (CAAAA)n Simple_repeat Simple_repeat 2 43 0 3 716 6958 146 21 42 chr3 17297659 17299783 -142300000 + L1VL4 LINE L1 245 2381 -3502 3 716 555 203 6 19 chr3 17299956 17300112 -142299671 + (CATATA)n Simple_repeat Simple_repeat 1 154 0 3 716 631 153 0 13 chr3 17300081 17300233 -142299550 + (TA)n Simple_repeat Simple_repeat 2 151 0 3 716 354 310 152 0 chr3 17300250 17300395 -142299388 + Lx8 LINE L1 6993 7159 -314 3 716 1129 296 137 9 chr3 17300867 17301327 -142298456 + MER82 DNA MER2_type 35 553 -100 3 89 1085 89 0 7 chr3 17301394 17301541 -142298242 + B1_Mus2 SINE Alu 1 146 -1 3 717 192 111 0 0 chr3 17301543 17301579 -142298204 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 3 717 549 297 174 22 chr3 17301622 17302550 -142297233 + L1M4 LINE L1 3762 4830 -1316 3 717 849 181 34 0 chr3 17302559 17302736 -142297047 - L1_Mur3 LINE L1 -4056 1824 1642 3 717 845 265 80 154 chr3 17302744 17303192 -142296591 + Lx7 LINE L1 7152 7559 -137 3 717 1078 108 0 0 chr3 17303192 17303340 -142296443 + B1_Mus1 SINE Alu 1 148 0 3 717 845 265 80 154 chr3 17303340 17303480 -142296303 + Lx7 LINE L1 7560 7696 0 3 717 248 272 22 72 chr3 17303938 17304160 -142295623 - Lx9 LINE L1 -15 7629 7419 3 717 480 313 103 92 chr3 17304132 17304586 -142295197 - Lx9 LINE L1 -126 7518 7060 3 717 329 311 66 0 chr3 17304571 17304693 -142295090 + Lx9 LINE L1 6822 6951 -693 3 717 287 262 211 16 chr3 17304999 17305127 -142294656 + L1M4 LINE L1 5433 5585 -655 3 717 662 350 93 14 chr3 17305148 17305581 -142294202 - Lx8 LINE L1 -10 7463 6997 3 717 455 17 34 0 chr3 17305711 17305770 -142294013 + (CATA)n Simple_repeat Simple_repeat 3 63 0 3 717 722 278 61 32 chr3 17305856 17306317 -142293466 + L1MB8 LINE L1 5631 6104 -74 3 717 676 274 118 94 chr3 17306652 17306982 -142292801 + MLT1D LTR MaLR 3 340 -165 3 717 202 222 0 47 chr3 17307538 17307623 -142292160 + (TAAG)n Simple_repeat Simple_repeat 3 83 0 3 717 212 299 0 29 chr3 17308212 17308281 -142291502 + G-rich Low_complexity Low_complexity 4 70 0 3 717 392 277 71 0 chr3 17308549 17308704 -142291079 - L1MC2 LINE L1 -151 6193 6028 3 717 28761 93 51 6 chr3 17309739 17314697 -142285086 + L1Md_F2 LINE L1 399 5584 -299 3 717 7190 90 2 5 chr3 17314699 17315686 -142284097 + L1Md_F2 LINE L1 5587 6570 -12 3 717 21 0 0 0 chr3 17315716 17315737 -142284046 + AT_rich Low_complexity Low_complexity 1 21 0 3 717 970 284 47 29 chr3 17315747 17316251 -142283532 + Lx7 LINE L1 4727 5259 -621 3 717 288 272 65 39 chr3 17316264 17316417 -142283366 + Lx8 LINE L1 7258 7414 -59 3 717 315 285 0 28 chr3 17316614 17316762 -142283021 + Lx7 LINE L1 5552 5705 -1991 3 717 22 0 0 0 chr3 17317105 17317127 -142282656 + AT_rich Low_complexity Low_complexity 1 22 0 3 717 7955 138 5 5 chr3 17317287 17318490 -142281293 + L1VL4 LINE L1 29 1222 -2337 3 717 1087 75 0 40 chr3 17318490 17318642 -142281141 - B1_Mus2 SINE Alu 0 147 2 3 717 7955 106 10 16 chr3 17318642 17319509 -142280274 + L1VL4 LINE L1 1223 2094 -1465 3 717 249 57 0 0 chr3 17319509 17319544 -142280239 + (T)n Simple_repeat Simple_repeat 1 35 0 3 717 37161 42 10 4 chr3 17319563 17325689 -142274094 - L1Md_T LINE L1 -5 6580 323 3 717 17101 166 21 4 chr3 17325686 17329807 -142269976 + L1_Mus4 LINE L1 2446 6631 -5 3 717 260 286 72 56 chr3 17329840 17330001 -142269782 + L1M2 LINE L1 2915 3076 -3067 3 717 288 0 0 0 chr3 17330001 17330033 -142269750 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 3 717 260 286 72 56 chr3 17330033 17330300 -142269483 + L1M2 LINE L1 3077 3350 -2793 3 717 493 294 101 71 chr3 17330739 17331006 -142268777 - B4A SINE B4 -16 276 2 3 717 1237 288 94 13 chr3 17331308 17331841 -142267942 - Lx6 LINE L1 -74 7386 6454 3 717 184 143 18 18 chr3 17331925 17331982 -142267801 + T-rich Low_complexity Low_complexity 3 59 0 3 717 1574 289 44 21 chr3 17331984 17332707 -142267076 - Lx6 LINE L1 -710 6750 5757 3 717 5041 84 99 0 chr3 17332736 17333464 -142266319 - L1_Mus3 LINE L1 -5 6633 5834 3 717 1631 89 0 0 chr3 17333464 17333688 -142266095 + ORR1A1 LTR MaLR 2 225 -121 3 717 6618 215 20 12 chr3 17333688 17335271 -142264512 - L1_Mur3 LINE L1 -1902 3978 2384 3 717 7254 79 12 1 chr3 17335242 17336241 -142263542 - L1Md_F2 LINE L1 -806 5077 4068 3 717 4003 79 0 2 chr3 17336233 17336766 -142263017 + L1Md_F2 LINE L1 5052 5583 -300 3 717 7575 63 7 29 chr3 17336768 17337774 -142262009 + L1Md_F2 LINE L1 5587 6582 0 3 717 3066 221 45 125 chr3 17337774 17338454 -142261329 - L1_Mur3 LINE L1 -3460 2420 1787 3 717 207 0 0 0 chr3 17338454 17338477 -142261306 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 3 717 3066 221 45 125 chr3 17338477 17338748 -142261035 - L1_Mur3 LINE L1 -4094 1786 1520 3 717 1133 113 6 0 chr3 17338748 17338925 -142260858 + (TTC)n Simple_repeat Simple_repeat 2 179 0 3 717 3066 221 45 125 chr3 17338925 17339155 -142260628 - L1_Mur3 LINE L1 -4361 1519 1333 3 717 386 247 39 49 chr3 17339660 17339762 -142260021 - B3A SINE B2 -5 193 93 3 717 38340 6 0 0 chr3 17341280 17346662 -142253121 + L1Md_A LINE L1 203 5586 -297 3 717 9000 4 0 0 chr3 17346662 17347658 -142252125 + L1Md_A LINE L1 5587 6582 0 3 717 258 280 35 4 chr3 17348477 17348569 -142251214 + PB1D10 SINE Alu 24 120 0 3 717 291 302 16 79 chr3 17348700 17348826 -142250957 - MTEa LTR MaLR -235 144 27 4 717 6149 167 53 27 chr3 17348840 17350628 -142249155 + Lx3C LINE L1 5150 6974 -2 4 717 32 26 0 0 chr3 17351183 17351222 -142248561 + AT_rich Low_complexity Low_complexity 1 39 0 4 717 968 75 7 14 chr3 17351897 17352045 -142247738 + L1Md_F2 LINE L1 6423 6569 -13 4 717 270 247 31 16 chr3 17353020 17353143 -142246640 - L1M1 LINE L1 -637 5654 5526 4 717 8107 41 1 4 chr3 17354072 17355189 -142244594 - L1Md_F2 LINE L1 0 6582 5471 4 717 23 0 0 0 chr3 17355530 17355553 -142244230 + AT_rich Low_complexity Low_complexity 1 23 0 4 717 2533 269 75 54 chr3 17356011 17356728 -142243055 + RCHARR1 DNA MER1_type 4 758 -216 4 717 1824 63 4 4 chr3 17356728 17356966 -142242817 + L1Md_F2 LINE L1 6326 6563 -19 4 717 2533 269 75 54 chr3 17356966 17357199 -142242584 + RCHARR1 DNA MER1_type 759 974 0 4 717 6152 139 19 33 chr3 17358324 17359362 -142240421 - Lx LINE L1 -6 6648 5625 4 717 6263 147 15 34 chr3 17359364 17360519 -142239264 + Lx LINE L1 4478 5610 -273 4 717 243 0 0 0 chr3 17362399 17362426 -142237357 + (TG)n Simple_repeat Simple_repeat 2 28 0 4 717 22 0 0 0 chr3 17363805 17363827 -142235956 + AT_rich Low_complexity Low_complexity 1 22 0 4 717 4462 172 26 33 chr3 17364680 17365785 -142233998 - Lx3C LINE L1 -503 6473 5371 4 717 822 160 6 40 chr3 17365785 17365961 -142233822 - L1Md_F2 LINE L1 -3 6579 6410 4 717 4749 42 0 2 chr3 17365961 17366533 -142233250 + L1Md_F2 LINE L1 6008 6578 -4 4 717 3106 164 11 62 chr3 17366533 17366610 -142233173 - Lx3C LINE L1 -516 5370 5295 4 717 408 40 0 0 chr3 17366615 17366665 -142233118 + (TTA)n Simple_repeat Simple_repeat 2 51 0 4 717 8859 102 34 24 chr3 17366665 17368987 -142230796 - Lx3A LINE L1 -12 6969 4595 4 717 2878 102 7 2 chr3 17368982 17369415 -142230368 - Lx3A LINE L1 -1725 4161 3727 4 717 362 329 81 19 chr3 17369524 17369735 -142230048 + L1ME2 LINE L1 5779 6002 -162 4 717 24 32 0 0 chr3 17370152 17370183 -142229600 + AT_rich Low_complexity Low_complexity 1 31 0 4 717 480 245 36 9 chr3 17370827 17370938 -142228845 - B1F SINE Alu 0 149 36 4 717 1635 189 54 69 chr3 17371095 17371487 -142228296 + ORR1B1 LTR MaLR 1 386 -8 4 717 1861 42 13 0 chr3 17372029 17372266 -142227517 - L1Md_F3 LINE L1 -2 6582 6343 4 717 1327 118 0 39 chr3 17372324 17372553 -142227230 - Lx LINE L1 -7 6647 6428 4 717 258 105 0 0 chr3 17372690 17372728 -142227055 + (T)n Simple_repeat Simple_repeat 1 38 0 4 717 1154 69 0 0 chr3 17372729 17372873 -142226910 - B1_Mus2 SINE Alu -2 145 2 4 717 21 0 0 0 chr3 17372907 17372928 -142226855 + AT_rich Low_complexity Low_complexity 1 21 0 4 717 214 465 0 15 chr3 17376004 17376135 -142223648 + B1_Mur4 SINE Alu 10 138 -12 4 717 545 0 15 0 chr3 17376140 17376205 -142223578 + (TAGA)n Simple_repeat Simple_repeat 4 69 0 4 717 32073 82 12 17 chr3 17376637 17381273 -142218510 - L1Md_F2 LINE L1 -14 6568 1963 4 717 441 0 0 0 chr3 17381273 17381322 -142218461 + (TC)n Simple_repeat Simple_repeat 2 50 0 4 717 32073 131 17 35 chr3 17381322 17382787 -142216996 - L1Md_F2 LINE L1 -3921 1962 525 4 717 1444 78 10 0 chr3 17382787 17382991 -142216792 - L1_Mus1 LINE L1 -9 6558 6353 4 717 4153 222 104 20 chr3 17383024 17383161 -142216622 + Lx3C LINE L1 5727 5881 -1095 4 717 3222 48 5 0 chr3 17383161 17383555 -142216228 + MTA_Mm LTR MaLR 1 396 0 4 717 4153 222 104 20 chr3 17383555 17384573 -142215210 + Lx3C LINE L1 5882 6995 -5 4 717 7140 106 6 4 chr3 17384698 17385732 -142214051 + L1_Mus3 LINE L1 5603 6638 0 4 717 5499 162 31 26 chr3 17385735 17386772 -142213011 + Lx2B LINE L1 5959 7000 0 4 717 1484 183 80 114 chr3 17388144 17388521 -142211262 - ORR1B2 LTR MaLR -3 364 1 4 717 710 188 45 13 chr3 17391682 17391838 -142207945 + RLTR15 LTR ERVK 1 161 -198 4 717 2436 18 0 0 chr3 17391838 17392114 -142207669 + L1Md_F2 LINE L1 5311 5586 -297 4 717 8071 42 9 7 chr3 17392114 17393108 -142206675 + L1Md_F2 LINE L1 5587 6582 0 4 717 1274 132 34 0 chr3 17393113 17393317 -142206466 + RLTR15 LTR ERVK 149 359 0 4 717 22 0 0 0 chr3 17393457 17393479 -142206304 + AT_rich Low_complexity Low_complexity 1 22 0 4 717 338 336 63 13 chr3 17393508 17393807 -142205976 + L1M2 LINE L1 3570 3883 -2260 4 717 625 43 21 0 chr3 17394036 17394129 -142205654 - L1_Mus2 LINE L1 0 6566 6472 4 717 1495 286 79 86 chr3 17394550 17395224 -142204559 + Lx8 LINE L1 6354 7022 -451 4 717 768 209 86 35 chr3 17395252 17395392 -142204391 + ORR1C1 LTR MaLR 168 323 -55 4 717 1215 190 40 18 chr3 17395392 17395665 -142204118 + Lx2B LINE L1 6722 7000 0 4 717 768 209 86 35 chr3 17395665 17395722 -142204061 + ORR1C1 LTR MaLR 324 375 -3 4 717 306 0 0 0 chr3 17396112 17396146 -142203637 + (CA)n Simple_repeat Simple_repeat 1 34 0 4 717 294 367 155 10 chr3 17396607 17396904 -142202879 + MLT2D LTR ERVL 47 386 -28 4 717 1616 202 116 5 chr3 17397534 17397913 -142201870 - MTC LTR MaLR 0 421 1 4 717 235 287 67 38 chr3 17398002 17398050 -142201733 - MER54A LTR ERVL -790 111 61 4 717 207 0 0 0 chr3 17398050 17398073 -142201710 + (CAA)n Simple_repeat Simple_repeat 2 24 0 4 717 235 287 67 38 chr3 17398073 17398129 -142201654 - MER54A LTR ERVL -841 60 5 4 717 1911 274 14 45 chr3 17399426 17400113 -142199670 + Lx6 LINE L1 6455 7434 -26 4 717 423 339 87 50 chr3 17400317 17400559 -142199224 + B4A SINE B4 25 275 -17 4 717 23 0 0 0 chr3 17400894 17400917 -142198866 + AT_rich Low_complexity Low_complexity 1 23 0 4 717 204 118 0 0 chr3 17401067 17401073 -142198710 + (A)n Simple_repeat Simple_repeat 1 6 0 4 717 3311 50 14 0 chr3 17401073 17401519 -142198264 + L1Md_F3 LINE L1 6146 6584 0 4 717 1532 266 52 12 chr3 17402168 17402591 -142197192 - Lx6 LINE L1 -896 6564 6125 4 717 472 125 56 11 chr3 17402655 17402744 -142197039 + L1_Mur3 LINE L1 3909 4001 -1879 4 717 632 115 97 0 chr3 17402746 17402859 -142196924 + L1_Mur3 LINE L1 4871 4994 -886 4 717 895 186 132 4 chr3 17402886 17403113 -142196670 - L1_Mur3 LINE L1 -1984 3896 3641 4 717 1639 237 25 12 chr3 17403112 17403515 -142196268 + Lx6 LINE L1 6555 6972 -724 4 717 4298 97 13 2 chr3 17403515 17404127 -142195656 + Lx3_Mus LINE L1 6391 7009 0 4 717 1462 262 43 21 chr3 17404127 17404169 -142195614 + Lx6 LINE L1 6973 7022 -674 4 717 1410 56 0 0 chr3 17404169 17404349 -142195434 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 4 717 1462 262 43 21 chr3 17404349 17404370 -142195413 + Lx6 LINE L1 7023 7043 -653 4 717 2878 212 67 11 chr3 17404448 17405087 -142194696 + ORR1C2-int LTR MaLR 835 1509 0 4 717 1227 215 124 40 chr3 17405087 17405441 -142194342 + ORR1C2 LTR MaLR 1 384 0 4 717 1047 278 120 22 chr3 17405457 17405825 -142193958 - MTD LTR MaLR 0 419 16 4 717 3457 144 43 5 chr3 17407183 17407762 -142192021 - Lx3A LINE L1 -9 6972 6372 4 717 2990 123 5 9 chr3 17407763 17408244 -142191539 + Lx2 LINE L1 5447 5922 -1078 4 717 698 270 0 0 chr3 17408793 17408930 -142190853 + B1_Mur2 SINE Alu 6 142 -7 4 717 3785 40 2 0 chr3 17409870 17410325 -142189458 + L1Md_F2 LINE L1 6124 6579 -3 4 717 303 250 105 0 chr3 17410365 17410441 -142189342 + Lx7 LINE L1 6103 6186 -1510 4 717 3250 240 38 22 chr3 17410500 17411322 -142188461 + Lx7 LINE L1 6178 7012 -684 4 717 1205 274 99 4 chr3 17411314 17411801 -142187982 + Lx7 LINE L1 7118 7650 -46 4 717 533 168 9 0 chr3 17411814 17411921 -142187862 + GA-rich Low_complexity Low_complexity 1 108 0 4 717 385 214 35 18 chr3 17411921 17412035 -142187748 + Lx7 LINE L1 7578 7693 -3 4 717 3809 142 35 24 chr3 17412220 17412882 -142186901 + Lx2 LINE L1 6329 6997 0 4 717 501 168 34 0 chr3 17413232 17413351 -142186432 + Lx LINE L1 6532 6654 0 4 717 22080 162 50 10 chr3 17413653 17419583 -142180200 + L1Md_F2 LINE L1 366 6542 -40 4 717 342 49 32 16 chr3 17419583 17419645 -142180138 + (TAAA)n Simple_repeat Simple_repeat 1 63 0 4 717 1980 237 12 163 chr3 17421445 17422115 -142177668 + Lx5 LINE L1 6473 7041 -9 4 717 9041 127 85 62 chr3 17423153 17424503 -142175280 + L1_Mm LINE L1 3437 4906 -977 4 717 229 228 120 65 chr3 17424503 17424611 -142175172 - RMER20A LTR ERVK -217 299 186 4 717 9041 127 85 62 chr3 17424611 17424909 -142174874 + L1_Mm LINE L1 4907 5232 -651 4 717 24 32 0 0 chr3 17425032 17425063 -142174720 + AT_rich Low_complexity Low_complexity 1 31 0 4 717 1521 223 55 33 chr3 17425828 17426194 -142173589 + ORR1D1 LTR MaLR 1 374 0 4 717 180 176 0 0 chr3 17427092 17427126 -142172657 + (CA)n Simple_repeat Simple_repeat 2 35 0 4 717 425 303 119 10 chr3 17427233 17427543 -142172240 + L1MB7 LINE L1 5621 5964 -220 4 717 330 129 0 0 chr3 17427543 17427605 -142172178 + (GA)n Simple_repeat Simple_repeat 2 63 0 4 717 958 121 13 0 chr3 17427608 17427757 -142172026 - L1_Mus2 LINE L1 -445 6121 5971 4 717 2716 85 6 6 chr3 17427731 17428194 -142171589 + L1_Mus2 LINE L1 5487 5949 -617 4 717 1227 188 9 0 chr3 17428213 17428437 -142171346 - URR1A DNA MER1_type 0 226 1 4 717 540 0 0 0 chr3 17428616 17428676 -142171107 + (TAGA)n Simple_repeat Simple_repeat 2 61 0 4 717 677 300 18 26 chr3 17428727 17428953 -142170830 + RMER1B Other Other 91 314 -752 4 717 328 250 53 21 chr3 17429118 17429212 -142170571 + MER5A1 DNA MER1_type 67 163 -3 4 717 1148 265 53 85 chr3 17429815 17430359 -142169424 - RLTR11A2 LTR ERVK 0 527 1 4 717 25 0 0 0 chr3 17430411 17430436 -142169347 + AT_rich Low_complexity Low_complexity 1 25 0 4 717 294 98 0 0 chr3 17431185 17431236 -142168547 + (CAAA)n Simple_repeat Simple_repeat 4 54 0 4 718 435 299 71 50 chr3 17433642 17433783 -142166000 - RSINE1 SINE B4 -15 150 7 4 718 668 312 84 19 chr3 17433794 17434061 -142165722 + MLT1A0 LTR MaLR 80 388 -2 4 718 364 271 31 10 chr3 17434532 17434629 -142165154 - MLT2B2 LTR ERVL -414 101 3 4 718 453 19 0 0 chr3 17434826 17434880 -142164903 + (TG)n Simple_repeat Simple_repeat 1 54 0 4 718 299 23 47 0 chr3 17434882 17434925 -142164858 + (CAGAGA)n Simple_repeat Simple_repeat 2 46 0 4 718 368 232 273 0 chr3 17434930 17435029 -142164754 - RLTR16 LTR ERVK -379 126 1 4 718 7883 135 78 19 chr3 17435058 17435863 -142163920 - L1_Mur2 LINE L1 -3006 2871 2016 4 718 276 100 0 0 chr3 17435863 17435903 -142163880 + (TGG)n Simple_repeat Simple_repeat 1 40 0 4 718 333 47 0 0 chr3 17435905 17435948 -142163835 + (TG)n Simple_repeat Simple_repeat 2 44 0 4 718 7883 161 67 16 chr3 17435948 17437329 -142162454 - L1_Mur2 LINE L1 -3862 2015 566 4 718 3058 62 15 0 chr3 17437343 17437733 -142162050 + MTA_Mm LTR MaLR 1 396 0 4 718 360 354 0 0 chr3 17438122 17438235 -142161548 - PB1D10 SINE Alu -4 113 1 4 718 217 51 51 0 chr3 17438247 17438286 -142161497 + (TTTTG)n Simple_repeat Simple_repeat 2 42 0 4 718 1057 90 14 0 chr3 17438318 17438462 -142161321 - B1_Mus1 SINE Alu -2 146 1 5 718 25 0 0 0 chr3 17438462 17438487 -142161296 + AT_rich Low_complexity Low_complexity 1 25 0 5 718 26 30 0 0 chr3 17438508 17438541 -142161242 + AT_rich Low_complexity Low_complexity 1 33 0 5 718 3732 45 9 2 chr3 17438701 17439164 -142160619 - L1Md_F2 LINE L1 -1 6581 6116 5 718 864 302 64 4 chr3 17439234 17439470 -142160313 + B4A SINE B4 24 273 -19 5 718 2397 194 55 2 chr3 17440550 17441025 -142158758 + RLTR16 LTR ERVK 6 505 0 5 718 249 184 20 0 chr3 17442032 17442081 -142157702 - RMER21B LTR ERV1 -271 571 522 5 718 1054 345 108 105 chr3 17442819 17442866 -142156917 + MTE-int LTR MaLR 144 189 -1391 5 718 938 183 117 19 chr3 17442866 17443072 -142156711 + URR1A DNA MER1_type 1 226 0 5 718 1054 345 108 105 chr3 17443072 17444366 -142155417 + MTE-int LTR MaLR 190 1489 -91 5 718 276 374 20 61 chr3 17444578 17444618 -142155165 + ORR1E LTR MaLR 11 50 -309 5 718 609 336 51 35 chr3 17444618 17444696 -142155087 - MTE2a LTR MaLR -3 376 302 5 718 675 25 0 0 chr3 17444696 17444777 -142155006 + (TTTTC)n Simple_repeat Simple_repeat 5 85 0 5 718 609 336 51 35 chr3 17444777 17445068 -142154715 - MTE2a LTR MaLR -78 301 2 5 718 276 374 20 61 chr3 17445068 17445175 -142154608 + ORR1E LTR MaLR 51 152 -207 5 718 513 346 39 0 chr3 17445182 17445338 -142154445 + B3A SINE B2 1 162 -36 5 718 6929 111 20 6 chr3 17445340 17446457 -142153326 + L1_Mus4 LINE L1 5505 6636 0 5 718 354 45 0 0 chr3 17446686 17446730 -142153053 + (CA)n Simple_repeat Simple_repeat 1 44 0 5 718 239 71 24 0 chr3 17446731 17446773 -142153010 + (GA)n Simple_repeat Simple_repeat 2 44 0 5 718 483 60 0 0 chr3 17448887 17448954 -142150829 + (TG)n Simple_repeat Simple_repeat 2 68 0 5 718 275 98 0 38 chr3 17449044 17449097 -142150686 + (TTTG)n Simple_repeat Simple_repeat 2 52 0 5 718 593 27 13 0 chr3 17449513 17449588 -142150195 + (TAGA)n Simple_repeat Simple_repeat 3 78 0 5 718 558 269 39 93 chr3 17449877 17450082 -142149701 - B3A SINE B2 0 198 5 5 718 364 342 78 108 chr3 17450115 17450396 -142149387 - ORR1E LTR MaLR -6 353 89 5 718 2554 69 0 47 chr3 17450396 17450530 -142149253 - L1Md_F2 LINE L1 0 6582 6464 5 718 2631 81 78 5 chr3 17450530 17450913 -142148870 + RLTR10A LTR ERVK 1 411 0 5 718 2554 69 0 47 chr3 17450913 17451158 -142148625 - L1Md_F2 LINE L1 -119 6463 6221 5 718 364 342 78 108 chr3 17451158 17451237 -142148546 - ORR1E LTR MaLR -271 88 5 5 718 339 298 112 14 chr3 17451344 17451487 -142148296 - MIRb SINE MIR -29 239 83 5 718 24 32 0 0 chr3 17452172 17452203 -142147580 + AT_rich Low_complexity Low_complexity 1 31 0 5 718 240 370 39 8 chr3 17452873 17453001 -142146782 - L2a LINE L2 -1 3425 3294 5 718 314 58 0 37 chr3 17457859 17457913 -142141870 + (TTTG)n Simple_repeat Simple_repeat 1 52 0 5 718 233 279 36 60 chr3 17459242 17459326 -142140457 - Tigger5 DNA MER2_type -2321 85 4 5 718 931 173 6 13 chr3 17459529 17459687 -142140096 + RLTR17 LTR ERVK 1 157 -535 5 718 241 208 0 20 chr3 17459687 17459736 -142140047 + B3 SINE B2 161 208 -8 5 718 2778 121 62 9 chr3 17459803 17460268 -142139515 + Lx LINE L1 6161 6650 -4 5 718 272 359 87 22 chr3 17460517 17460702 -142139081 + L2 LINE L2 1857 2053 -1366 5 718 460 327 207 36 chr3 17460788 17461105 -142138678 + ORR1E LTR MaLR 4 370 0 5 718 315 0 0 0 chr3 17462596 17462631 -142137152 + (TG)n Simple_repeat Simple_repeat 2 36 0 5 718 447 185 0 0 chr3 17462633 17462725 -142137058 + (TA)n Simple_repeat Simple_repeat 2 93 0 5 718 25 31 0 0 chr3 17462985 17463017 -142136766 + AT_rich Low_complexity Low_complexity 1 32 0 5 718 288 0 0 0 chr3 17463168 17463200 -142136583 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 5 718 556 191 29 58 chr3 17463200 17463339 -142136444 - B1_Mus1 SINE Alu -13 135 1 5 718 255 200 0 0 chr3 17463843 17463893 -142135890 + MT2B2 LTR ERVL 1 50 -483 5 718 6981 110 20 3 chr3 17463982 17464046 -142135737 - L1_Mus4 LINE L1 -6 6630 6567 5 718 283 23 45 0 chr3 17464046 17464090 -142135693 + (CAAAA)n Simple_repeat Simple_repeat 1 46 0 5 718 6981 110 20 3 chr3 17464090 17465050 -142134733 - L1_Mus4 LINE L1 -70 6566 5589 5 718 593 268 81 23 chr3 17465075 17465362 -142134421 + MT2B2 LTR ERVL 70 520 -64 5 718 405 0 0 0 chr3 17465390 17465435 -142134348 + (TG)n Simple_repeat Simple_repeat 2 46 0 5 718 724 284 40 25 chr3 17465628 17465830 -142133953 + B3 SINE B2 1 205 -11 5 718 370 346 24 84 chr3 17467206 17467373 -142132410 + B4A SINE B4 14 170 -122 5 718 414 0 0 0 chr3 17467445 17467491 -142132292 + (CA)n Simple_repeat Simple_repeat 2 47 0 5 718 246 32 0 0 chr3 17467493 17467524 -142132259 + (TA)n Simple_repeat Simple_repeat 1 31 0 5 718 836 224 6 6 chr3 17468981 17469143 -142130640 + Lx4A LINE L1 6757 6918 -140 5 718 444 245 10 0 chr3 17469137 17469235 -142130548 + Lx9 LINE L1 7101 7199 -445 5 718 483 336 34 93 chr3 17469236 17469472 -142130311 - B4 SINE B4 -65 227 6 5 718 23 78 0 0 chr3 17469566 17469617 -142130166 + AT_rich Low_complexity Low_complexity 1 51 0 5 718 506 299 106 19 chr3 17470545 17470705 -142129078 + B4 SINE B4 85 258 -34 5 718 684 36 0 0 chr3 17470716 17470799 -142128984 + (CA)n Simple_repeat Simple_repeat 2 84 0 5 718 3249 36 0 0 chr3 17471011 17471398 -142128385 + L1Md_A LINE L1 6196 6582 0 5 718 371 319 82 0 chr3 17471596 17471731 -142128052 - RMER1C Other Other -782 560 415 5 718 1284 206 62 131 chr3 17471717 17472137 -142127646 + RMER1C Other Other 824 1214 -128 5 718 219 88 0 0 chr3 17472137 17472171 -142127612 + (TCC)n Simple_repeat Simple_repeat 1 34 0 5 718 1254 67 0 0 chr3 17472171 17472336 -142127447 + (TTC)n Simple_repeat Simple_repeat 2 166 0 5 718 633 324 115 19 chr3 17472744 17473163 -142126620 + L1MEg LINE L1 855 1313 -4771 5 718 4516 78 137 3 chr3 17473208 17473901 -142125882 - L1_Mus3 LINE L1 0 6638 5853 5 718 3222 124 79 0 chr3 17473901 17474418 -142125365 + L1_Mus3 LINE L1 5297 5854 -29 5 718 300 83 0 0 chr3 17474426 17474474 -142125309 + (TTTG)n Simple_repeat Simple_repeat 2 49 0 5 718 241 308 39 65 chr3 17474523 17474676 -142125107 + MLT1E3 LTR MaLR 98 246 -378 5 718 1248 27 0 0 chr3 17476507 17476653 -142123130 + B1_Mus2 SINE Alu 2 147 0 5 718 211 136 36 36 chr3 17476759 17476843 -142122940 + A-rich Low_complexity Low_complexity 3 86 0 5 718 3184 165 52 59 chr3 17476891 17477586 -142122197 + RMER6C LTR ERVK 1 690 0 5 718 597 284 76 20 chr3 17477786 17478088 -142121695 + L1MA6 LINE L1 5628 5946 -354 5 718 256 314 101 85 chr3 17478217 17478346 -142121437 - B1F1 SINE Alu -7 142 12 5 718 483 291 159 11 chr3 17478354 17478618 -142121165 + Lx8 LINE L1 7169 7471 -2 5 718 1134 251 132 0 chr3 17478774 17479144 -142120639 + MTD LTR MaLR 1 419 0 5 718 773 188 14 0 chr3 17479155 17479293 -142120490 - B1_Mur2 SINE Alu -6 143 4 5 718 23 54 0 0 chr3 17479294 17479331 -142120452 + AT_rich Low_complexity Low_complexity 1 37 0 5 718 705 282 62 94 chr3 17479544 17479978 -142119805 - RLTR12B LTR ERVK -31 497 78 5 718 633 287 97 8 chr3 17480804 17481071 -142118712 + B4A SINE B4 2 292 0 5 718 321 118 0 0 chr3 17481096 17481147 -142118636 + (TCCC)n Simple_repeat Simple_repeat 3 53 0 5 718 200 250 109 43 chr3 17482178 17482270 -142117513 + L3 LINE CR1 2057 2154 -2335 5 718 294 131 17 161 chr3 17483863 17483981 -142115802 - Lx4B LINE L1 0 7058 6958 5 718 646 229 7 53 chr3 17483973 17484125 -142115658 + Lx4B LINE L1 6810 6954 -104 5 718 21 0 0 0 chr3 17484440 17484461 -142115322 + AT_rich Low_complexity Low_complexity 1 21 0 5 718 390 21 0 0 chr3 17485269 17485316 -142114467 + (CA)n Simple_repeat Simple_repeat 2 48 0 5 718 306 0 0 0 chr3 17485328 17485362 -142114421 + (TAAA)n Simple_repeat Simple_repeat 1 34 0 5 718 353 310 174 27 chr3 17485538 17486159 -142113624 + L1MB7 LINE L1 5263 5974 -210 5 718 185 281 116 75 chr3 17486595 17486768 -142113015 + MIR SINE MIR 1 180 -82 5 718 1074 230 5 0 chr3 17487174 17487378 -142112405 - B3 SINE B2 -6 210 6 5 718 387 41 0 0 chr3 17487943 17487992 -142111791 + (TA)n Simple_repeat Simple_repeat 1 49 0 5 718 901 168 6 6 chr3 17488247 17488427 -142111356 + CT-rich Low_complexity Low_complexity 1 180 0 5 718 222 37 0 0 chr3 17488427 17488454 -142111329 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 5 718 24 32 0 0 chr3 17488583 17488614 -142111169 + AT_rich Low_complexity Low_complexity 1 31 0 5 718 485 336 61 13 chr3 17488809 17489038 -142110745 + B4 SINE B4 2 241 -51 5 718 191 365 27 13 chr3 17491014 17491089 -142108694 + MIR3 SINE MIR 87 162 -46 5 718 200 227 0 0 chr3 17491522 17491566 -142108217 + A-rich Low_complexity Low_complexity 1 44 0 5 718 29 47 0 0 chr3 17491587 17491630 -142108153 + AT_rich Low_complexity Low_complexity 1 43 0 5 718 285 265 0 38 chr3 17492191 17492297 -142107486 + T-rich Low_complexity Low_complexity 3 104 0 5 718 22 35 0 0 chr3 17492989 17493018 -142106765 + AT_rich Low_complexity Low_complexity 1 29 0 5 718 536 85 0 0 chr3 17494796 17494878 -142104905 - L1_Mus3 LINE L1 -4 6634 6553 5 718 1014 325 23 31 chr3 17495127 17495511 -142104272 + Lx8 LINE L1 6814 7194 -279 5 718 360 0 0 0 chr3 17495716 17495756 -142104027 + (TA)n Simple_repeat Simple_repeat 2 41 0 5 718 3859 223 38 60 chr3 17495971 17496907 -142102876 + RMER13B LTR ERVK 1 908 0 5 718 289 250 0 16 chr3 17497081 17497142 -142102641 + B4A SINE B4 24 83 -209 5 718 342 0 0 0 chr3 17497192 17497230 -142102553 + (TTG)n Simple_repeat Simple_repeat 2 39 0 5 718 3984 43 2 6 chr3 17497245 17497742 -142102041 - L1Md_F2 LINE L1 -1 6581 6087 5 718 555 359 99 23 chr3 17498267 17498529 -142101254 + B4 SINE B4 8 289 -3 5 718 1739 231 51 13 chr3 17499167 17499557 -142100226 + MTD LTR MaLR 1 405 -14 5 718 225 0 0 0 chr3 17500173 17500198 -142099585 + (T)n Simple_repeat Simple_repeat 1 25 0 1 718 1135 62 7 0 chr3 17500200 17500345 -142099438 - B1_Mm SINE Alu 0 147 2 2 718 268 318 61 56 chr3 17500966 17501146 -142098637 + RLTR42-int LTR ERVK 1157 1337 -4185 3 718 393 22 0 0 chr3 17502725 17502771 -142097012 + (TA)n Simple_repeat Simple_repeat 2 47 0 4 718 23 0 0 0 chr3 17502969 17502992 -142096791 + AT_rich Low_complexity Low_complexity 1 23 0 5 718 319 245 40 30 chr3 17503812 17503913 -142095870 - MTEa LTR MaLR 0 379 278 6 718 180 184 0 0 chr3 17504418 17504467 -142095316 + (CA)n Simple_repeat Simple_repeat 1 49 0 7 718 252 0 0 0 chr3 17504468 17504496 -142095287 + (TAAA)n Simple_repeat Simple_repeat 4 31 0 8 718 216 312 0 49 chr3 17504770 17504851 -142094932 + ID4 SINE ID 3 79 -4 9 718 643 346 11 79 chr3 17505175 17505364 -142094419 - B4A SINE B4 -35 257 85 1 718 270 56 0 0 chr3 17505364 17505400 -142094383 + (CA)n Simple_repeat Simple_repeat 2 37 0 1 718 643 346 11 79 chr3 17505400 17505477 -142094306 - B4A SINE B4 -208 84 9 1 718 2033 105 88 0 chr3 17506303 17506713 -142093070 - L1_Mm LINE L1 -2151 3735 3207 1 718 2634 81 2 66 chr3 17506713 17507109 -142092674 + L1_Mus2 LINE L1 6196 6566 0 1 718 3175 102 25 4 chr3 17507911 17508386 -142091397 - L1_Mus4 LINE L1 -7 6629 6145 1 718 8124 142 41 18 chr3 17508386 17510194 -142089589 + L1_Mus4 LINE L1 4284 6145 -491 1 718 243 204 19 0 chr3 17510874 17510928 -142088855 + CT-rich Low_complexity Low_complexity 3 57 0 1 718 538 313 46 5 chr3 17510938 17511134 -142088649 - ID_B1 SINE B4 -17 207 4 1 718 402 21 0 0 chr3 17511474 17511521 -142088262 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 718 269 170 64 0 chr3 17511535 17511582 -142088201 - B1F2 SINE Alu -90 59 10 1 718 22 0 0 0 chr3 17511641 17511663 -142088120 + AT_rich Low_complexity Low_complexity 1 22 0 1 718 3620 42 20 2 chr3 17511893 17512342 -142087441 + L1Md_F3 LINE L1 6128 6584 0 2 718 276 221 161 49 chr3 17512813 17512894 -142086889 + RSINE1 SINE B4 12 101 -64 2 718 185 0 0 39 chr3 17512909 17512935 -142086848 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 2 718 288 200 0 0 chr3 17513516 17513591 -142086192 + (CAGAGA)n Simple_repeat Simple_repeat 3 77 0 2 718 236 53 26 0 chr3 17513764 17513802 -142085981 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 2 718 1697 29 0 0 chr3 17513861 17514065 -142085718 + L1Md_A LINE L1 6379 6582 0 2 718 1923 205 8 59 chr3 17514218 17514493 -142085290 + L1_Mur1 LINE L1 877 1134 -5850 2 718 974 73 6 112 chr3 17514493 17514663 -142085120 - L1_Mus2 LINE L1 -1 6565 6414 2 718 3044 150 12 17 chr3 17514663 17515296 -142084487 + L1_Mur1 LINE L1 1135 1767 -4119 2 718 4312 182 61 23 chr3 17515290 17516206 -142083577 + Lx3C LINE L1 5854 6804 -172 2 718 24 32 0 0 chr3 17518366 17518397 -142081386 + AT_rich Low_complexity Low_complexity 1 31 0 2 718 220 224 0 0 chr3 17523703 17523752 -142076031 + A-rich Low_complexity Low_complexity 1 49 0 3 718 23 0 0 0 chr3 17523968 17523991 -142075792 + AT_rich Low_complexity Low_complexity 1 23 0 3 718 2584 134 22 33 chr3 17524235 17524690 -142075093 - Lx LINE L1 -2 6652 6203 3 718 1100 221 152 3 chr3 17525440 17525735 -142074048 + Lx4B LINE L1 6720 7058 0 3 718 180 0 0 0 chr3 17525817 17525837 -142073946 + (TA)n Simple_repeat Simple_repeat 2 21 0 3 718 333 0 0 0 chr3 17525837 17525873 -142073910 + (TG)n Simple_repeat Simple_repeat 2 38 0 3 718 2707 103 52 12 chr3 17526387 17526402 -142073381 - Lx3A LINE L1 -1 6980 6966 3 718 183 80 0 0 chr3 17526402 17526427 -142073356 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 3 718 2707 103 52 12 chr3 17526427 17526834 -142072949 - Lx3A LINE L1 -16 6965 6541 3 718 2441 99 21 10 chr3 17528318 17528707 -142071076 - L1_Mus4 LINE L1 0 6636 6244 3 718 613 236 141 68 chr3 17529623 17529800 -142069983 - B3A SINE B2 0 198 9 3 718 23 0 0 0 chr3 17531175 17531198 -142068585 + AT_rich Low_complexity Low_complexity 1 23 0 4 718 23 0 0 0 chr3 17532426 17532449 -142067334 + AT_rich Low_complexity Low_complexity 1 23 0 4 718 420 71 0 0 chr3 17532536 17532592 -142067191 + (TAAA)n Simple_repeat Simple_repeat 1 56 0 4 718 27 29 0 0 chr3 17533137 17533171 -142066612 + AT_rich Low_complexity Low_complexity 1 34 0 4 718 328 251 164 50 chr3 17533403 17533584 -142066199 + B3A SINE B2 3 215 -1 4 718 3368 149 32 2 chr3 17534907 17535466 -142064317 + Lx4A LINE L1 6480 7055 -3 4 718 546 16 0 0 chr3 17536310 17536373 -142063410 + (GA)n Simple_repeat Simple_repeat 1 63 0 4 718 639 0 0 0 chr3 17536934 17537005 -142062778 + (TC)n Simple_repeat Simple_repeat 1 71 0 4 718 233 312 0 0 chr3 17537063 17537140 -142062643 - Lx9 LINE L1 -363 7281 7205 4 718 243 79 0 0 chr3 17537410 17537448 -142062335 + (CA)n Simple_repeat Simple_repeat 2 39 0 4 718 198 91 0 0 chr3 17538402 17538435 -142061348 + (TG)n Simple_repeat Simple_repeat 2 34 0 5 718 1698 160 48 20 chr3 17538591 17538942 -142060841 + Lx3B LINE L1 6606 6966 -7 5 718 21 0 0 0 chr3 17538947 17538968 -142060815 + AT_rich Low_complexity Low_complexity 1 21 0 5 718 7005 31 4 0 chr3 17541249 17542074 -142057709 - L1Md_T LINE L1 -111 6471 5644 5 718 723 21 0 0 chr3 17542074 17542170 -142057613 + L1Md_T LINE L1 6486 6581 -1 5 718 566 307 37 29 chr3 17542265 17542614 -142057169 - L1ME1 LINE L1 -291 6061 5710 5 718 626 280 43 0 chr3 17542607 17542818 -142056965 - L1ME1 LINE L1 -3817 2502 2283 5 718 212 154 19 0 chr3 17542988 17543040 -142056743 + (TA)n Simple_repeat Simple_repeat 2 54 0 5 718 438 266 205 20 chr3 17543096 17543452 -142056331 - L1ME1 LINE L1 -4318 2082 1661 5 718 1810 131 67 38 chr3 17543658 17543999 -142055784 - Lx LINE L1 -7 6647 6297 5 718 312 120 0 0 chr3 17544223 17544273 -142055510 + (TA)n Simple_repeat Simple_repeat 2 51 0 5 718 239 279 74 0 chr3 17544324 17544446 -142055337 - L1ME1 LINE L1 -5484 916 786 5 718 230 275 10 71 chr3 17544449 17544475 -142055308 + RMER19C LTR ERVK 183 204 -407 5 718 555 0 26 13 chr3 17544475 17544551 -142055232 + (TAGA)n Simple_repeat Simple_repeat 4 80 0 5 718 230 275 10 71 chr3 17544551 17544622 -142055161 + RMER19C LTR ERVK 205 274 -337 5 718 638 303 58 49 chr3 17544732 17544975 -142054808 + MTE2a LTR MaLR 135 379 0 6 718 210 156 0 0 chr3 17545283 17545328 -142054455 + CT-rich Low_complexity Low_complexity 2 46 0 6 718 2430 82 95 109 chr3 17545856 17546351 -142053432 + RLTR44C LTR ERVK 1 488 -14 6 718 649 332 73 29 chr3 17546358 17546699 -142053084 - MLT1B LTR MaLR -28 362 7 6 718 408 20 0 0 chr3 17547449 17547498 -142052285 + (TG)n Simple_repeat Simple_repeat 2 50 0 6 718 395 344 53 86 chr3 17547617 17547919 -142051864 - B4A SINE B4 0 292 1 6 718 222 366 228 32 chr3 17547919 17548107 -142051676 - B4 SINE B4 -66 226 2 6 718 750 249 32 46 chr3 17548389 17548608 -142051175 - B3 SINE B2 0 216 1 6 718 35470 45 0 3 chr3 17549277 17554534 -142045249 + L1Md_T LINE L1 252 5588 -298 6 718 8354 31 5 0 chr3 17554535 17555526 -142044257 + L1Md_T LINE L1 5590 6585 0 6 718 5348 37 8 0 chr3 17555530 17556176 -142043607 + L1Md_T LINE L1 5932 6582 0 6 718 397 308 0 8 chr3 17556540 17556658 -142043125 + MLT2B4 LTR ERVL 1 117 -439 7 718 231 319 124 54 chr3 17556745 17556884 -142042899 + MLT2B4 LTR ERVL 310 475 -81 7 718 314 316 14 22 chr3 17556906 17557045 -142042738 + CT-rich Low_complexity Low_complexity 2 139 0 7 718 722 201 0 0 chr3 17557433 17557567 -142042216 - B1_Mus2 SINE Alu -13 134 1 7 718 316 196 87 26 chr3 17557774 17557889 -142041894 - Lx9 LINE L1 0 7644 7523 7 718 12077 89 30 2 chr3 17557933 17559720 -142040063 - L1VL4 LINE L1 -4 3555 1719 7 718 3973 163 32 142 chr3 17559720 17560547 -142039236 + RLTR13D6 LTR ERVK 1 726 -176 7 718 1154 48 14 0 chr3 17560547 17560692 -142039091 - B1_Mm SINE Alu 0 147 1 7 718 3973 163 32 142 chr3 17560692 17560878 -142038905 + RLTR13D6 LTR ERVK 727 902 0 7 718 5843 97 21 3 chr3 17560879 17562363 -142037420 - L1VL4 LINE L1 -1835 1724 218 7 718 277 62 42 0 chr3 17562562 17562610 -142037173 + (TA)n Simple_repeat Simple_repeat 2 51 0 7 718 318 50 0 0 chr3 17562767 17562807 -142036976 + (TA)n Simple_repeat Simple_repeat 1 40 0 7 719 352 214 0 0 chr3 17563715 17563785 -142035998 + L1MA5 LINE L1 6204 6273 -27 7 719 311 309 0 20 chr3 17563890 17563989 -142035794 + GA-rich Low_complexity Low_complexity 3 99 0 8 719 219 36 0 0 chr3 17564080 17564108 -142035675 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 8 719 186 337 60 12 chr3 17564767 17564851 -142034932 - L2 LINE L2 -2821 598 511 8 719 3343 82 99 0 chr3 17564934 17565410 -142034373 - L1_Mus3 LINE L1 -7 6631 6109 8 719 270 311 87 43 chr3 17566221 17566359 -142033424 + B1F1 SINE Alu 6 149 0 8 719 22 0 0 0 chr3 17566442 17566464 -142033319 + AT_rich Low_complexity Low_complexity 1 22 0 8 719 225 393 0 45 chr3 17566533 17566621 -142033162 + B1F1 SINE Alu 1 84 -65 8 719 4034 51 0 4 chr3 17567798 17568309 -142031474 + L1Md_F2 LINE L1 6074 6582 0 8 719 351 320 0 0 chr3 17569134 17569231 -142030552 - B1_Mur1 SINE Alu -17 132 36 8 719 1549 316 34 24 chr3 17569622 17570128 -142029655 + RMER1B Other Other 8 518 -548 8 719 712 314 14 40 chr3 17571323 17571545 -142028238 - B3A SINE B2 0 216 1 9 719 1418 262 71 8 chr3 17571705 17572070 -142027713 - MTD LTR MaLR 0 419 32 9 719 3861 254 80 47 chr3 17572102 17573300 -142026483 - MTD-int LTR MaLR -1 1257 20 9 719 657 224 154 8 chr3 17573315 17573557 -142026226 - MTD LTR MaLR -13 406 13 9 719 254 304 76 29 chr3 17573829 17573934 -142025849 + L2 LINE L2 2772 2881 -538 9 719 961 141 13 0 chr3 17574108 17574337 -142025446 + CT-rich Low_complexity Low_complexity 1 232 0 9 719 1153 92 11 11 chr3 17574364 17574550 -142025233 - L1_Mus3 LINE L1 -1 6637 6452 9 719 2968 63 77 2 chr3 17574667 17575081 -142024702 - L1Md_F2 LINE L1 0 6582 6138 9 719 7412 133 28 1 chr3 17575592 17576777 -142023006 + Lx2 LINE L1 5775 6991 -6 9 719 441 330 11 58 chr3 17576779 17576969 -142022814 + B3A SINE B2 18 198 0 9 719 6263 238 88 25 chr3 17576972 17577583 -142022200 - Lx6 LINE L1 -12 7448 6785 9 719 4877 135 51 32 chr3 17577583 17578468 -142021315 - RMER17A2 LTR ERVK -4 902 1 9 719 6263 238 88 25 chr3 17578468 17579510 -142020273 - Lx6 LINE L1 -676 6784 5691 9 719 40449 16 0 6 chr3 17579512 17585683 -142014100 - L1Md_A LINE L1 0 6582 452 1 719 921 228 0 11 chr3 17585684 17585875 -142013908 - Lx6 LINE L1 -181 5699 5511 9 719 21 0 0 0 chr3 17586981 17587002 -142012781 + AT_rich Low_complexity Low_complexity 1 21 0 1 719 21 0 0 0 chr3 17588872 17588893 -142010890 + AT_rich Low_complexity Low_complexity 1 21 0 1 719 280 321 0 12 chr3 17589501 17589586 -142010197 + GA-rich Low_complexity Low_complexity 2 85 0 1 719 1207 118 0 0 chr3 17590267 17590437 -142009346 - Lx3C LINE L1 -191 5695 5526 1 719 7146 123 77 33 chr3 17590436 17591669 -142008114 + Lx3C LINE L1 5670 6956 -20 1 719 263 160 20 0 chr3 17591669 17591719 -142008064 + Lx3C LINE L1 6924 6974 -2 1 719 31 26 0 0 chr3 17591720 17591758 -142008025 + AT_rich Low_complexity Low_complexity 1 38 0 1 719 1124 80 12 0 chr3 17592206 17592368 -142007415 - L1_Mus1 LINE L1 0 6567 6404 1 719 274 309 19 93 chr3 17592370 17592477 -142007306 + PB1D7 SINE Alu 21 119 -1 1 719 733 247 26 0 chr3 17592816 17593010 -142006773 + Lx6 LINE L1 28 226 -7502 1 719 1135 176 65 19 chr3 17593009 17593270 -142006513 + Lx6 LINE L1 4268 4540 -1340 1 719 830 211 0 51 chr3 17593277 17593363 -142006420 + Lx6 LINE L1 4908 4992 -888 1 719 4104 83 2 21 chr3 17593363 17593944 -142005839 + L1Md_F2 LINE L1 6001 6570 -12 1 719 6303 182 12 43 chr3 17593944 17594277 -142005506 + Lx6 LINE L1 4505 5111 -769 1 719 1681 52 0 0 chr3 17594277 17594488 -142005295 + L1Md_T LINE L1 6372 6582 0 1 719 6303 171 16 40 chr3 17594488 17595544 -142004239 + Lx6 LINE L1 4742 5773 -107 1 719 868 181 6 39 chr3 17595539 17595717 -142004066 - Lx6 LINE L1 -616 6844 6673 1 719 4450 245 39 21 chr3 17595732 17596883 -142002900 + Lx6 LINE L1 5791 6962 -498 1 719 936 79 0 0 chr3 17596957 17597084 -142002699 - B1_Mus1 SINE Alu 0 148 22 1 719 3227 129 64 7 chr3 17597145 17597708 -142002075 - Lx3_Mus LINE L1 -17 6992 6398 1 719 243 232 0 0 chr3 17597709 17597765 -142002018 - Lx3_Mus LINE L1 -1133 5876 5821 1 719 988 260 38 11 chr3 17597755 17598016 -142001767 + Lx6 LINE L1 7190 7457 -3 1 719 30 45 0 0 chr3 17598302 17598346 -142001437 + AT_rich Low_complexity Low_complexity 1 44 0 1 719 505 225 135 5 chr3 17599019 17599211 -142000572 + Lx9 LINE L1 7421 7637 -7 1 719 610 294 0 16 chr3 17599846 17600036 -141999747 + Lx7 LINE L1 7145 7331 -365 1 719 298 74 37 0 chr3 17600038 17600092 -141999691 + (GTTTG)n Simple_repeat Simple_repeat 4 59 0 1 719 306 193 44 22 chr3 17600188 17600278 -141999505 + Lx7 LINE L1 7605 7696 0 1 719 5249 216 38 41 chr3 17600347 17600624 -141999159 - Lx6 LINE L1 -4 7456 7141 1 719 485 221 157 52 chr3 17600624 17600758 -141999025 + B1_Mur4 SINE Alu 1 148 -2 1 719 5249 216 38 41 chr3 17600758 17601636 -141998147 - Lx6 LINE L1 -320 7140 6304 1 719 21 57 0 0 chr3 17601740 17601775 -141998008 + AT_rich Low_complexity Low_complexity 1 35 0 1 719 275 296 92 9 chr3 17602225 17602334 -141997449 + MER5A1 DNA MER1_type 42 159 -7 1 719 21 71 0 0 chr3 17602670 17602712 -141997071 + AT_rich Low_complexity Low_complexity 1 42 0 1 719 710 281 36 106 chr3 17603069 17603600 -141996183 - Lx6 LINE L1 -1769 5927 5440 1 719 213 94 0 0 chr3 17603600 17603632 -141996151 + (TG)n Simple_repeat Simple_repeat 2 33 0 1 719 710 291 42 114 chr3 17603632 17603687 -141996096 - Lx6 LINE L1 -441 5439 5385 1 719 9819 163 13 49 chr3 17603813 17605168 -141994615 + L1VL4 LINE L1 275 1576 -1983 1 719 3758 58 19 0 chr3 17605168 17605634 -141994149 - MT2C_Mm LTR ERVL 0 475 1 1 719 9819 144 17 11 chr3 17605634 17606708 -141993075 + L1VL4 LINE L1 1577 2650 -909 1 719 5717 123 46 5 chr3 17606705 17607821 -141991962 + L1VL2 LINE L1 363 1532 -2382 1 719 3000 84 12 2 chr3 17607821 17608237 -141991546 + L1_Mus3 LINE L1 6213 6632 -6 1 719 2790 92 27 9 chr3 17608237 17608360 -141991423 + L1VL2 LINE L1 1533 1656 -2258 1 719 960 121 72 6 chr3 17608358 17608538 -141991245 + L1VL2 LINE L1 2488 2703 -3443 1 719 3339 270 54 37 chr3 17608793 17609060 -141990723 - Lx6 LINE L1 -1213 4667 4406 1 719 192 40 0 0 chr3 17609060 17609085 -141990698 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 1 719 3339 270 54 37 chr3 17609085 17610288 -141989495 - Lx6 LINE L1 -1475 4405 3171 1 719 21 36 0 0 chr3 17610644 17610672 -141989111 + AT_rich Low_complexity Low_complexity 1 28 0 1 719 207 0 0 0 chr3 17610694 17610717 -141989066 + (T)n Simple_repeat Simple_repeat 1 23 0 1 719 263 0 0 0 chr3 17611302 17611347 -141988436 + B2_Mm1t SINE B2 148 192 -1 1 719 1633 32 0 0 chr3 17611347 17611537 -141988246 + B2_Mm1t SINE B2 2 191 -2 1 719 253 329 13 0 chr3 17611607 17611683 -141988100 - B4A SINE B4 -23 269 193 1 719 1728 184 13 10 chr3 17611767 17612080 -141987703 + ORR1B1 LTR MaLR 41 354 -40 1 719 3769 105 13 10 chr3 17612081 17612676 -141987107 - L1_Mus1 LINE L1 -311 5572 4976 1 719 7615 52 0 11 chr3 17612680 17613672 -141986111 + L1_Mus1 LINE L1 5587 6567 0 1 719 316 118 78 0 chr3 17613672 17613723 -141986060 + ORR1B1 LTR MaLR 340 394 0 1 719 851 217 0 0 chr3 17613723 17613884 -141985899 + ORR1B1-int LTR MaLR 1 161 -1348 1 719 262 361 129 52 chr3 17613884 17614363 -141985420 + L2 LINE L2 1049 1564 -1855 1 719 286 143 0 39 chr3 17614371 17614422 -141985361 + MTC LTR MaLR 373 421 0 1 719 1313 173 0 74 chr3 17614527 17614851 -141984932 + MusHAL1 LINE L1 821 1120 -1592 1 719 1233 180 32 29 chr3 17614853 17615133 -141984650 + Lx2B LINE L1 6720 7000 0 1 719 3063 216 67 37 chr3 17615147 17615269 -141984514 - MTC-int LTR MaLR 0 1258 1130 1 719 1063 82 0 0 chr3 17615269 17615404 -141984379 - B1_Mus1 SINE Alu -9 139 5 1 719 3063 216 67 37 chr3 17615404 17616042 -141983741 - MTC-int LTR MaLR -129 1129 475 1 719 331 397 55 28 chr3 17616050 17616449 -141983334 - L2 LINE L2 -2572 847 438 1 719 1526 271 82 23 chr3 17616703 17617611 -141982172 - L1MA7 LINE L1 -24 6288 5342 1 719 21 0 0 0 chr3 17617774 17617795 -141981988 + AT_rich Low_complexity Low_complexity 1 21 0 1 719 2428 313 48 24 chr3 17617862 17618738 -141981045 + Lx9 LINE L1 6398 7261 -383 1 719 4254 57 2 2 chr3 17618738 17619270 -141980513 + L1Md_F2 LINE L1 6048 6579 -3 1 719 2428 313 48 24 chr3 17619270 17619477 -141980306 + Lx9 LINE L1 7262 7500 -144 1 719 528 16 0 0 chr3 17619477 17619538 -141980245 + (TG)n Simple_repeat Simple_repeat 1 61 0 1 719 2428 313 48 24 chr3 17619538 17619645 -141980138 + Lx9 LINE L1 7501 7616 -28 1 719 21 36 0 0 chr3 17619681 17619709 -141980074 + AT_rich Low_complexity Low_complexity 1 28 0 1 719 333 310 39 20 chr3 17619729 17619831 -141979952 + PB1D10 SINE Alu 9 112 -5 1 719 1174 247 126 5 chr3 17619833 17620215 -141979568 + Lx2B LINE L1 6572 6999 -1 1 719 227 41 39 39 chr3 17620215 17620266 -141979517 + (TAA)n Simple_repeat Simple_repeat 1 51 0 1 719 331 288 17 35 chr3 17620430 17620545 -141979238 - L1MA7 LINE L1 -968 5175 5063 1 719 21 36 0 0 chr3 17621064 17621092 -141978691 + AT_rich Low_complexity Low_complexity 1 28 0 1 719 223 276 52 41 chr3 17621727 17621867 -141977916 + MIRc SINE MIR 62 206 -62 1 719 3679 45 0 0 chr3 17621945 17622390 -141977393 - L1Md_T LINE L1 0 6582 6138 1 719 882 198 0 0 chr3 17622732 17622899 -141976884 - URR1B DNA MER1_type -2 223 57 1 719 438 312 39 5 chr3 17622997 17623203 -141976580 - L1MA4A LINE L1 -380 5923 5711 1 719 5938 97 20 9 chr3 17623433 17624346 -141975437 - Lx3_Mus LINE L1 -273 5613 4691 1 719 3183 122 49 11 chr3 17624353 17624630 -141975153 + Lx3_Mus LINE L1 5631 5907 -1102 1 719 441 0 0 0 chr3 17624630 17624679 -141975104 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 1 719 5012 102 40 5 chr3 17624679 17625663 -141974120 + Lx3_Mus LINE L1 5908 7002 -7 1 719 40 49 0 0 chr3 17625929 17625990 -141973793 + AT_rich Low_complexity Low_complexity 1 61 0 1 719 450 0 0 0 chr3 17626358 17626408 -141973375 + (TA)n Simple_repeat Simple_repeat 2 51 0 1 719 602 251 26 26 chr3 17626424 17626616 -141973167 + L1_Mur3 LINE L1 4373 4564 -1316 1 719 317 282 11 34 chr3 17626699 17626787 -141972996 - PB1D10 SINE Alu -3 114 29 1 719 26 30 0 0 chr3 17627516 17627549 -141972234 + AT_rich Low_complexity Low_complexity 1 33 0 1 719 623 276 25 0 chr3 17627609 17627808 -141971975 - L1MC2 LINE L1 -122 6222 6019 1 719 37279 72 2 22 chr3 17627820 17635321 -141964462 - L1Md_T LINE L1 0 6582 98 1 719 4863 55 11 3 chr3 17635431 17636046 -141963737 + L1_Mus2 LINE L1 5947 6566 0 1 719 1446 215 65 0 chr3 17636063 17636356 -141963427 + MTC LTR MaLR 110 421 0 1 719 536 261 182 0 chr3 17637064 17637240 -141962543 - B3 SINE B2 -8 208 1 1 719 4871 73 1 0 chr3 17637255 17637960 -141961823 + L1_Mus2 LINE L1 5548 6253 -313 1 719 563 142 74 8 chr3 17637960 17638081 -141961702 + L1_Mus1 LINE L1 6439 6567 0 1 719 487 296 86 62 chr3 17638558 17638767 -141961016 + B3 SINE B2 3 216 0 1 719 293 259 0 26 chr3 17638779 17638894 -141960889 + Lx9 LINE L1 7481 7592 -52 1 719 1403 91 31 9 chr3 17640181 17640403 -141959380 - L1_Mus3 LINE L1 -2 6636 6410 1 719 367 289 163 8 chr3 17640408 17640537 -141959246 + ID_B1 SINE B4 60 208 -16 1 719 242 311 65 50 chr3 17640436 17640575 -141959208 + B1_Mur4 SINE Alu 9 149 -1 1 719 312 324 88 20 chr3 17640664 17640824 -141958959 - MIRb SINE MIR -91 177 3 1 719 1357 117 40 5 chr3 17640941 17641165 -141958618 - RMER19A LTR ERVK -503 234 3 1 719 21 0 0 0 chr3 17641264 17641285 -141958498 + AT_rich Low_complexity Low_complexity 1 21 0 1 719 303 299 237 21 chr3 17641414 17641650 -141958133 - L2a LINE L2 -1 3425 3139 1 719 900 49 0 0 chr3 17642926 17643048 -141956735 + (TC)n Simple_repeat Simple_repeat 1 122 0 1 719 758 259 48 10 chr3 17643071 17643278 -141956505 - MTC LTR MaLR -57 364 150 1 719 2841 238 67 6 chr3 17643326 17644040 -141955743 - Lx6 LINE L1 -179 7281 6524 1 719 1796 197 53 11 chr3 17644539 17645264 -141954519 + Lx5 LINE L1 887 1644 -4233 1 719 19011 182 34 85 chr3 17645273 17648731 -141951052 + L1Md_F LINE L1 220 3625 -2261 1 719 1087 104 4 30 chr3 17648731 17648994 -141950789 + MTA_Mm LTR MaLR 13 396 0 1 719 19011 182 34 85 chr3 17648994 17651252 -141948531 + L1Md_F LINE L1 3626 5851 -35 1 719 7712 51 13 2 chr3 17651252 17652226 -141947557 + L1Md_F2 LINE L1 5597 6581 -1 1 719 19011 176 34 82 chr3 17652226 17652239 -141947544 + L1Md_F LINE L1 5852 5861 -25 1 719 5519 75 21 5 chr3 17652434 17653189 -141946594 + L1_Mus2 LINE L1 5800 6566 0 1 719 10771 177 50 42 chr3 17653189 17653626 -141946157 + Lx5 LINE L1 1638 2049 -3828 1 719 351 0 0 0 chr3 17653626 17653665 -141946118 + (CA)n Simple_repeat Simple_repeat 1 39 0 1 719 10771 177 50 42 chr3 17653665 17655877 -141943906 + Lx5 LINE L1 2050 4308 -1569 1 719 2743 105 7 8 chr3 17655881 17656382 -141943401 - Lx2 LINE L1 -1000 5997 5497 1 719 3977 136 15 1 chr3 17656375 17657039 -141942744 + Lx2 LINE L1 5972 6644 -353 1 719 1096 158 67 0 chr3 17657038 17657247 -141942536 + Lx2 LINE L1 6775 6997 0 1 719 3733 181 17 17 chr3 17657241 17658054 -141941729 + Lx5 LINE L1 4303 5115 -762 1 719 2769 95 2 24 chr3 17658054 17658288 -141941495 - MTB LTR MaLR 0 400 176 1 719 733 178 0 14 chr3 17658288 17658436 -141941347 - L1Md_T LINE L1 0 6582 6437 1 719 2769 95 2 24 chr3 17658436 17658610 -141941173 - MTB LTR MaLR -225 175 1 1 719 4949 228 67 26 chr3 17658610 17660351 -141939432 + Lx5 LINE L1 5111 6942 -108 1 719 1579 212 50 11 chr3 17660345 17660603 -141939180 - L1_Mur3 LINE L1 -4189 1691 1435 1 719 399 21 0 0 chr3 17660603 17660651 -141939132 + (TTTG)n Simple_repeat Simple_repeat 2 49 0 1 719 1579 199 49 98 chr3 17660651 17661060 -141938723 - L1_Mur3 LINE L1 -4446 1434 1051 1 719 278 0 54 0 chr3 17661078 17661115 -141938668 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 1 719 631 230 59 0 chr3 17661511 17661646 -141938137 + B1_Mur3 SINE Alu 3 145 -4 1 719 1313 281 18 9 chr3 17661944 17662379 -141937404 - Lx8 LINE L1 -319 7154 6716 1 719 265 204 0 0 chr3 17662422 17662476 -141937307 + Lx8 LINE L1 7270 7323 -150 1 719 1353 209 4 0 chr3 17662507 17662765 -141937018 + RLTR14 LTR ERV1 1 259 -123 2 719 1252 68 0 0 chr3 17662767 17662930 -141936853 + L1_Mus2 LINE L1 6404 6566 0 2 719 521 242 28 83 chr3 17662949 17663093 -141936690 + RLTR14 LTR ERV1 247 382 0 2 719 185 418 0 0 chr3 17663899 17663978 -141935805 - MIR3 SINE MIR 0 208 130 2 719 3759 68 2 97 chr3 17664431 17664997 -141934786 - RLTR1B LTR ERV1 0 512 1 2 719 257 289 86 32 chr3 17665469 17665562 -141934221 + PB1D10 SINE Alu 1 98 -19 2 719 5511 147 12 1 chr3 17665673 17666608 -141933175 + L1VL4 LINE L1 1 906 -5396 2 719 3095 164 46 59 chr3 17666633 17667734 -141932049 + L1VL4 LINE L1 492 1424 -2393 2 719 8271 136 14 5 chr3 17667740 17669943 -141929840 + L1_Mus4 LINE L1 4407 6629 -7 2 719 264 122 0 0 chr3 17671812 17671853 -141927930 + (TCC)n Simple_repeat Simple_repeat 2 42 0 2 719 185 146 21 0 chr3 17672647 17672695 -141927088 + T-rich Low_complexity Low_complexity 3 51 0 2 719 1209 89 50 6 chr3 17674349 17674529 -141925254 - B2_Mm2 SINE B2 -7 188 1 2 719 217 244 0 0 chr3 17674601 17674642 -141925141 + (TATG)n Simple_repeat Simple_repeat 1 41 0 2 719 240 407 58 10 chr3 17675982 17676179 -141923604 - MIRm SINE MIR -39 229 22 2 719 205 288 40 14 chr3 17677004 17677078 -141922705 + MIR SINE MIR 184 259 -3 2 719 203 61 30 0 chr3 17678242 17678275 -141921508 + (TTTTG)n Simple_repeat Simple_repeat 5 38 0 2 719 182 397 18 101 chr3 17679592 17679760 -141920023 + MIRm SINE MIR 24 177 -99 2 719 204 56 56 0 chr3 17679936 17679972 -141919811 + (TA)n Simple_repeat Simple_repeat 1 38 0 2 719 459 0 0 0 chr3 17680121 17680172 -141919611 + (GA)n Simple_repeat Simple_repeat 2 52 0 2 719 222 283 0 0 chr3 17680595 17680648 -141919135 + GA-rich Low_complexity Low_complexity 2 54 0 2 719 561 15 0 0 chr3 17683891 17683957 -141915826 + (TG)n Simple_repeat Simple_repeat 1 66 0 2 719 408 40 0 0 chr3 17687154 17687204 -141912579 + (GGA)n Simple_repeat Simple_repeat 2 51 0 2 719 378 0 0 0 chr3 17689697 17689739 -141910044 + (GA)n Simple_repeat Simple_repeat 1 42 0 2 719 891 0 0 0 chr3 17689776 17689875 -141909908 + (GGAGA)n Simple_repeat Simple_repeat 2 100 0 2 719 216 0 0 0 chr3 17690714 17690738 -141909045 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2 719 540 0 0 0 chr3 17690795 17690855 -141908928 + (TG)n Simple_repeat Simple_repeat 1 60 0 2 719 216 0 0 0 chr3 17691318 17691342 -141908441 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2 719 24 67 0 0 chr3 17693005 17693050 -141906733 + AT_rich Low_complexity Low_complexity 1 45 0 2 719 26 0 0 0 chr3 17693183 17693209 -141906574 + AT_rich Low_complexity Low_complexity 1 26 0 2 720 195 220 0 0 chr3 17696487 17696537 -141903246 + CT-rich Low_complexity Low_complexity 2 51 0 2 720 279 0 0 0 chr3 17697838 17697869 -141901914 + (A)n Simple_repeat Simple_repeat 1 31 0 2 720 21 36 0 0 chr3 17698118 17698146 -141901637 + AT_rich Low_complexity Low_complexity 1 28 0 2 720 24 32 0 0 chr3 17698257 17698288 -141901495 + AT_rich Low_complexity Low_complexity 1 31 0 2 720 30 0 0 0 chr3 17698840 17698870 -141900913 + AT_rich Low_complexity Low_complexity 1 30 0 2 720 35 78 0 0 chr3 17699601 17699678 -141900105 + AT_rich Low_complexity Low_complexity 1 77 0 2 720 369 0 0 0 chr3 17699869 17699910 -141899873 + (TTATG)n Simple_repeat Simple_repeat 2 42 0 2 720 402 21 0 0 chr3 17700155 17700202 -141899581 + (TAA)n Simple_repeat Simple_repeat 2 48 0 2 720 301 164 27 0 chr3 17700228 17700301 -141899482 + GA-rich Low_complexity Low_complexity 2 76 0 2 720 243 204 18 53 chr3 17701833 17701890 -141897893 - ID4 SINE ID -24 59 5 2 720 823 92 6 38 chr3 17701896 17702054 -141897729 + Lx LINE L1 6502 6654 0 2 720 187 370 19 39 chr3 17702630 17702734 -141897049 - L2a LINE L2 -20 3406 3305 2 720 591 173 0 0 chr3 17703140 17703250 -141896533 + (TTTA)n Simple_repeat Simple_repeat 2 111 0 2 720 832 280 124 27 chr3 17703273 17703530 -141896253 - B4A SINE B4 0 292 11 2 720 21 0 0 0 chr3 17704859 17704880 -141894903 + AT_rich Low_complexity Low_complexity 1 21 0 2 720 346 291 19 0 chr3 17704973 17705076 -141894707 - MLT1I LTR MaLR -11 400 296 2 720 266 319 0 0 chr3 17705184 17705253 -141894530 - MLT1I LTR MaLR -242 169 101 2 720 296 330 45 9 chr3 17705522 17705632 -141894151 + MIR3 SINE MIR 68 181 -27 2 720 250 324 28 56 chr3 17706207 17706315 -141893468 + PB1D10 SINE Alu 2 106 -11 2 720 6859 86 0 1 chr3 17707046 17707963 -141891820 - L1_Mus1 LINE L1 0 6567 5652 2 720 21 0 0 0 chr3 17708276 17708297 -141891486 + AT_rich Low_complexity Low_complexity 1 21 0 2 720 743 176 21 0 chr3 17709651 17709793 -141889990 + URR1A DNA MER1_type 82 226 0 2 720 345 369 30 30 chr3 17709982 17710116 -141889667 - B1F SINE Alu -7 142 9 2 720 180 200 0 0 chr3 17710942 17710982 -141888801 + GA-rich Low_complexity Low_complexity 1 40 0 2 720 339 347 53 6 chr3 17711107 17711278 -141888505 + MIR SINE MIR 78 256 -6 2 720 267 31 0 0 chr3 17711963 17711995 -141887788 + (TTG)n Simple_repeat Simple_repeat 2 33 0 2 720 195 395 56 40 chr3 17712054 17712252 -141887531 - MIR SINE MIR -3 259 59 2 720 432 279 10 0 chr3 17712293 17712397 -141887386 + PB1D9 SINE Alu 3 107 -13 2 720 435 63 0 0 chr3 17712399 17712462 -141887321 + (CAAAT)n Simple_repeat Simple_repeat 2 64 0 2 720 3025 36 0 0 chr3 17712601 17712963 -141886820 + L1Md_T LINE L1 6220 6581 -1 2 720 396 0 0 0 chr3 17713042 17713086 -141886697 + (CA)n Simple_repeat Simple_repeat 1 44 0 2 720 426 186 0 0 chr3 17713086 17713172 -141886611 + (TA)n Simple_repeat Simple_repeat 1 86 0 2 720 222 128 0 0 chr3 17713255 17713294 -141886489 + (GGGAGA)n Simple_repeat Simple_repeat 3 41 0 2 720 25 51 0 0 chr3 17714078 17714117 -141885666 + AT_rich Low_complexity Low_complexity 1 39 0 2 720 401 153 50 10 chr3 17715432 17715531 -141884252 - Lx9 LINE L1 -6 7638 7536 2 720 757 209 117 0 chr3 17715597 17715760 -141884023 + Lx5 LINE L1 6477 6658 -392 2 720 737 279 0 56 chr3 17715777 17715993 -141883790 + Lx7 LINE L1 7118 7321 -375 2 720 312 225 56 0 chr3 17716013 17716102 -141883681 + Lx7 LINE L1 7602 7695 -1 2 720 2577 72 0 93 chr3 17716743 17717139 -141882644 - L1_Mus2 LINE L1 -3 6563 6205 2 720 343 296 71 8 chr3 17717355 17717481 -141882302 - MLT2B2 LTR ERVL -8 554 421 2 720 1538 212 75 3 chr3 17717626 17717972 -141881811 - ORR1D1 LTR MaLR -3 371 1 2 720 1044 276 65 6 chr3 17718255 17718580 -141881203 - Lx8 LINE L1 -258 7215 6872 2 720 219 183 14 40 chr3 17718623 17718697 -141881086 + A-rich Low_complexity Low_complexity 5 76 0 2 720 258 132 0 0 chr3 17718868 17718921 -141880862 + (T)n Simple_repeat Simple_repeat 1 53 0 2 720 1432 265 53 41 chr3 17719476 17719913 -141879870 - Lx6 LINE L1 -2 7458 7017 2 720 497 343 11 34 chr3 17720007 17720182 -141879601 + MER20 DNA MER1_type 35 205 -14 2 720 1860 191 107 31 chr3 17720514 17721028 -141878755 - Lx9 LINE L1 -6 7638 7086 2 720 242 247 12 12 chr3 17721237 17721323 -141878460 + T-rich Low_complexity Low_complexity 1 86 0 2 720 460 279 140 35 chr3 17722082 17722253 -141877530 + B4 SINE B4 10 198 -94 2 720 261 0 0 0 chr3 17722305 17722334 -141877449 + (CA)n Simple_repeat Simple_repeat 1 29 0 2 720 237 321 27 45 chr3 17722440 17722551 -141877232 - PB1D10 SINE Alu 0 117 9 2 720 23 0 0 0 chr3 17723018 17723041 -141876742 + AT_rich Low_complexity Low_complexity 1 23 0 2 720 874 173 0 51 chr3 17723063 17723221 -141876562 + B1_Mur4 SINE Alu 1 150 0 2 720 279 280 118 27 chr3 17723278 17723388 -141876395 + B4A SINE B4 4 123 -169 2 720 230 233 0 0 chr3 17723837 17723880 -141875903 + polypyrimidine Low_complexity Low_complexity 1 43 0 2 720 227 103 26 0 chr3 17725590 17725629 -141874154 + (TCCCC)n Simple_repeat Simple_repeat 1 40 0 2 720 692 328 28 78 chr3 17725744 17726028 -141873755 - B4A SINE B4 -22 270 1 2 720 247 276 9 133 chr3 17726871 17726984 -141872799 + MTEb LTR MaLR 268 366 -13 2 720 259 278 36 24 chr3 17728446 17728566 -141871217 + ID4 SINE ID 10 128 -24 2 720 321 185 0 0 chr3 17729070 17729135 -141870648 + (TA)n Simple_repeat Simple_repeat 2 66 0 2 720 1056 145 40 53 chr3 17729284 17729465 -141870318 + BGLII_B LTR ERVK 1 187 -254 2 720 1834 148 47 3 chr3 17729465 17729763 -141870020 - RLTR10E LTR ERVK 0 311 1 2 720 1056 145 40 53 chr3 17729763 17729781 -141870002 + BGLII_B LTR ERVK 188 200 -241 2 720 369 0 0 0 chr3 17729781 17729822 -141869961 + (CA)n Simple_repeat Simple_repeat 2 42 0 2 720 531 0 0 0 chr3 17729822 17729880 -141869903 + (GA)n Simple_repeat Simple_repeat 2 60 0 2 720 1056 248 192 41 chr3 17729880 17730245 -141869538 + BGLII_B LTR ERVK 107 548 -5 2 720 1028 291 87 13 chr3 17730503 17731318 -141868465 - Charlie1a DNA MER1_type -16 1439 484 2 720 525 330 90 62 chr3 17731329 17731652 -141868131 - Charlie1a DNA MER1_type -1121 334 3 2 720 8070 34 0 0 chr3 17732146 17733093 -141866690 + L1Md_T LINE L1 5636 6582 0 2 720 545 314 31 82 chr3 17733449 17733840 -141865943 - MTEb LTR MaLR -6 353 5 2 720 444 19 0 0 chr3 17733868 17733921 -141865862 + (CA)n Simple_repeat Simple_repeat 2 54 0 2 720 212 324 9 89 chr3 17734999 17735111 -141864672 - MIRb SINE MIR -85 183 81 2 720 594 258 7 0 chr3 17735212 17735363 -141864420 - Lx5 LINE L1 -339 6711 6560 2 720 9576 106 35 10 chr3 17735415 17737649 -141862134 + L1_Mus2 LINE L1 4232 6523 -43 2 720 3925 76 25 2 chr3 17737647 17738200 -141861583 - L1_Mm LINE L1 -206 5677 5112 2 720 23 0 0 0 chr3 17738442 17738465 -141861318 + AT_rich Low_complexity Low_complexity 1 23 0 2 720 1397 151 59 0 chr3 17738492 17738730 -141861053 - ORR1A2 LTR MaLR -8 319 68 2 720 696 311 35 45 chr3 17738730 17739016 -141860767 + RLTR20D LTR ERVK 1 283 -285 3 720 512 270 0 90 chr3 17739006 17739173 -141860610 + RLTR20D LTR ERVK 423 574 -4 3 720 522 186 61 35 chr3 17739132 17739294 -141860489 - ORR1B1 LTR MaLR -205 141 4 3 720 6770 155 38 45 chr3 17739294 17740615 -141859168 - ORR1B1-int LTR MaLR -34 1929 619 3 720 1093 107 107 0 chr3 17740632 17740801 -141858982 - B2_Mm2 SINE B2 -8 187 1 3 720 278 47 0 44 chr3 17740815 17740860 -141858923 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 3 720 597 144 246 0 chr3 17740881 17740999 -141858784 - B1_Mus1 SINE Alu 0 148 2 3 720 22 0 0 0 chr3 17741460 17741482 -141858301 + AT_rich Low_complexity Low_complexity 1 22 0 3 720 373 294 28 113 chr3 17741544 17741686 -141858097 + B1F SINE Alu 1 130 -19 3 720 325 333 0 9 chr3 17741953 17742065 -141857718 + MLT1A0 LTR MaLR 248 358 -7 3 720 558 82 0 0 chr3 17743133 17743218 -141856565 + (GA)n Simple_repeat Simple_repeat 1 85 0 3 720 250 264 164 94 chr3 17743381 17743540 -141856243 - L2c LINE L2 -1 3386 3217 3 720 875 94 8 0 chr3 17743752 17743879 -141855904 - L1_Mus2 LINE L1 -3 6563 6436 3 720 234 0 0 0 chr3 17743978 17744004 -141855779 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 3 720 459 52 0 0 chr3 17744225 17744283 -141855500 + (CA)n Simple_repeat Simple_repeat 1 58 0 3 720 306 67 0 0 chr3 17744284 17744329 -141855454 + (CAGA)n Simple_repeat Simple_repeat 2 46 0 3 720 412 227 56 118 chr3 17744693 17744888 -141854895 + RLTR8 LTR ERVK 182 365 0 3 720 377 359 87 68 chr3 17744991 17745359 -141854424 - MLT1G LTR MaLR -184 411 32 3 720 575 324 144 56 chr3 17745791 17746111 -141853672 + ORR1E LTR MaLR 8 355 -4 3 720 425 294 71 8 chr3 17746116 17746243 -141853540 + ORR1E-int LTR MaLR 2 136 -1444 3 720 376 375 35 7 chr3 17746470 17746615 -141853168 + B4A SINE B4 1 149 -143 3 720 532 244 8 8 chr3 17746947 17747067 -141852716 - MER34A LTR ERV1 -438 133 14 3 720 1151 75 0 0 chr3 17749077 17749224 -141850559 - B1_Mus2 SINE Alu 0 147 1 3 720 201 175 0 0 chr3 17749314 17749354 -141850429 + CT-rich Low_complexity Low_complexity 1 40 0 3 720 259 327 59 0 chr3 17749385 17749486 -141850297 + Lx8 LINE L1 7188 7294 -179 3 720 513 0 0 0 chr3 17752172 17752229 -141847554 + (GA)n Simple_repeat Simple_repeat 2 58 0 3 720 467 45 80 0 chr3 17752375 17752463 -141847320 + (TTTG)n Simple_repeat Simple_repeat 2 96 0 3 720 676 218 0 11 chr3 17752487 17752663 -141847120 + CT-rich Low_complexity Low_complexity 1 174 0 3 720 1202 262 59 59 chr3 17752663 17753105 -141846678 - Lx6 LINE L1 0 7460 7019 3 720 606 346 90 19 chr3 17753139 17753436 -141846347 + MLT1A0 LTR MaLR 39 366 -8 3 720 1161 95 0 0 chr3 17753448 17753805 -141845978 + (TG)n Simple_repeat Simple_repeat 1 357 0 3 720 299 323 71 171 chr3 17755152 17755492 -141844291 - ORR1E LTR MaLR -51 308 3 3 720 207 286 175 8 chr3 17755495 17755615 -141844168 - MIRb SINE MIR -12 256 117 3 720 856 108 7 7 chr3 17755963 17756103 -141843680 + (GAAA)n Simple_repeat Simple_repeat 2 141 0 3 720 390 91 0 0 chr3 17756103 17756158 -141843625 + (GGGA)n Simple_repeat Simple_repeat 2 56 0 3 720 418 123 47 39 chr3 17756156 17756283 -141843500 + GA-rich Low_complexity Low_complexity 2 129 0 3 720 1684 179 93 48 chr3 17757068 17757489 -141842294 + RMER10A LTR ERVL 1 440 -2 3 720 361 286 33 0 chr3 17757525 17757616 -141842167 + PB1D10 SINE Alu 4 97 -20 3 720 889 346 68 42 chr3 17757984 17758488 -141841295 + MT2A LTR ERVL 1 517 -16 3 720 182 299 121 65 chr3 17758516 17758806 -141840977 + L2 LINE L2 2665 2970 -449 3 720 227 311 154 11 chr3 17759036 17759127 -141840656 - B1_Mm SINE Alu -13 134 31 3 720 2037 177 61 83 chr3 17760623 17761079 -141838704 - RLTR41 LTR ERV1 0 446 1 3 720 2488 193 64 51 chr3 17761477 17761794 -141837989 + RLTR20A LTR ERVK 1 343 -198 3 720 207 0 0 0 chr3 17761794 17761817 -141837966 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 3 720 2488 193 64 51 chr3 17761817 17762033 -141837750 + RLTR20A LTR ERVK 344 541 0 3 720 264 30 0 0 chr3 17762906 17762939 -141836844 + (TTTTG)n Simple_repeat Simple_repeat 3 35 0 3 720 249 349 117 13 chr3 17763829 17763983 -141835800 - MIR SINE MIR -32 230 61 3 720 423 294 24 40 chr3 17764315 17764439 -141835344 - RSINE1 SINE B4 -43 122 1 3 720 255 277 46 0 chr3 17764439 17764504 -141835279 - B1_Mur2 SINE Alu -1 148 81 3 720 342 298 0 56 chr3 17764446 17764535 -141835248 - ID_B1 SINE B4 -8 216 133 3 720 302 269 128 11 chr3 17764589 17764683 -141835100 - PB1D10 SINE Alu 0 117 13 3 720 189 0 0 0 chr3 17764684 17764705 -141835078 + (CA)n Simple_repeat Simple_repeat 1 21 0 3 720 327 302 111 90 chr3 17765998 17766187 -141833596 - B4A SINE B4 0 292 100 3 720 225 140 53 0 chr3 17767514 17767571 -141832212 + CT-rich Low_complexity Low_complexity 2 61 0 3 720 867 307 47 25 chr3 17768090 17768364 -141831419 + B4A SINE B4 10 289 -3 3 720 497 330 80 4 chr3 17768409 17768634 -141831149 + MER2 DNA MER2_type 101 342 -3 3 720 490 330 44 49 chr3 17768766 17768992 -141830791 - MLT1C LTR MaLR -3 464 240 3 720 7424 43 1 12 chr3 17768993 17770317 -141829466 - L1Md_F2 LINE L1 0 6582 5280 3 720 305 344 24 16 chr3 17770317 17770444 -141829339 - MLT1C LTR MaLR -214 253 126 3 720 279 182 204 0 chr3 17770515 17770603 -141829180 + MER2 DNA MER2_type 102 207 -138 3 720 396 0 0 0 chr3 17771687 17771731 -141828052 + (TG)n Simple_repeat Simple_repeat 2 45 0 3 720 253 234 62 15 chr3 17771993 17772058 -141827725 + B1F SINE Alu 17 84 -65 3 720 1073 223 30 117 chr3 17772099 17772399 -141827384 + RLTR18B LTR ERVK 1 274 -238 3 720 623 227 57 0 chr3 17772399 17772540 -141827243 + RLTR18B LTR ERVK 121 269 -243 3 720 18568 104 10 6 chr3 17772545 17776250 -141823533 - L1_Mus1 LINE L1 -2 6565 2840 3 720 228 68 0 0 chr3 17776253 17776297 -141823486 - L1_Mus4 LINE L1 0 6636 6593 3 720 3046 42 0 0 chr3 17776297 17776651 -141823132 + IAPEY2_LTR LTR ERVK 1 354 -3 3 720 374 205 61 69 chr3 17776651 17776782 -141823001 + IAPLTR4_I LTR ERVK 17 146 -1324 3 720 2839 129 9 0 chr3 17776781 17777245 -141822538 + IAPLTR4_I LTR ERVK 571 1038 -432 3 720 797 126 0 0 chr3 17777240 17777359 -141822424 + IAPEy-int LTR ERVK 1236 1354 -6159 3 720 7384 87 20 2 chr3 17780011 17781132 -141818651 - MusHAL1 LINE L1 -559 2153 1013 3 720 1301 95 0 10 chr3 17781134 17781336 -141818447 + L1_Mus4 LINE L1 6434 6633 -3 3 720 2709 159 10 26 chr3 17781418 17781498 -141818285 + Lx4A LINE L1 6571 6643 -415 3 720 3004 26 79 35 chr3 17781498 17781892 -141817891 + IAPLTR2a LTR ERVK 1 411 0 3 720 2709 159 10 26 chr3 17781892 17782307 -141817476 + Lx4A LINE L1 6644 7058 0 3 720 186 189 0 0 chr3 17782501 17782538 -141817245 + A-rich Low_complexity Low_complexity 1 37 0 3 720 234 355 26 66 chr3 17783007 17783158 -141816625 - MIRm SINE MIR -130 146 2 3 720 853 340 49 27 chr3 17785007 17785376 -141814407 + MTEb LTR MaLR 3 379 0 3 720 915 184 5 44 chr3 17785842 17786047 -141813736 + Lx4B LINE L1 6512 6708 -350 3 720 31 26 0 0 chr3 17786126 17786164 -141813619 + AT_rich Low_complexity Low_complexity 1 38 0 3 720 22077 166 29 12 chr3 17786199 17787452 -141812331 + Lx2 LINE L1 767 2064 -3822 3 720 2914 91 15 2 chr3 17787452 17787847 -141811936 + MTB LTR MaLR 1 400 0 3 720 22077 159 37 21 chr3 17787847 17791711 -141808072 + Lx2 LINE L1 2065 5980 -1017 3 720 4640 131 57 6 chr3 17791711 17792488 -141807295 + Lx3_Mus LINE L1 6186 7001 -8 3 720 7165 150 33 50 chr3 17792488 17793376 -141806407 + Lx2 LINE L1 5981 6855 -142 3 720 1558 183 39 78 chr3 17793376 17793785 -141805998 + RLTR9C LTR ERVK 1 393 0 3 720 7165 150 33 50 chr3 17793785 17793937 -141805846 + Lx2 LINE L1 6856 6997 0 3 720 23 33 0 0 chr3 17794108 17794138 -141805645 + AT_rich Low_complexity Low_complexity 1 30 0 3 720 24 32 0 0 chr3 17794380 17794411 -141805372 + AT_rich Low_complexity Low_complexity 1 31 0 3 720 23 33 0 0 chr3 17794832 17794862 -141804921 + AT_rich Low_complexity Low_complexity 1 30 0 3 720 1735 219 98 8 chr3 17797698 17798076 -141801707 - MTD LTR MaLR -7 412 1 3 720 2389 87 19 106 chr3 17799678 17800102 -141799681 + L1_Mus3 LINE L1 6247 6633 -5 3 720 687 321 39 41 chr3 17800288 17800427 -141799356 - L1MA4A LINE L1 -371 5932 5794 3 720 348 24 0 0 chr3 17800427 17800468 -141799315 + (TG)n Simple_repeat Simple_repeat 2 42 0 3 720 687 312 63 40 chr3 17800468 17800900 -141798883 - L1MA4A LINE L1 -507 5793 5353 3 720 207 0 0 0 chr3 17800900 17800923 -141798860 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 3 720 681 312 63 40 chr3 17800923 17800951 -141798832 - L1MA4A LINE L1 -948 5352 5321 3 720 300 294 92 31 chr3 17800997 17801127 -141798656 - L1MA4A LINE L1 -878 5265 5128 3 720 347 351 21 11 chr3 17801162 17801257 -141798526 - RSINE1 SINE B4 -62 103 8 3 720 222 167 18 18 chr3 17801263 17801318 -141798465 + (TTTG)n Simple_repeat Simple_repeat 2 56 0 3 720 1466 49 21 16 chr3 17801483 17801671 -141798112 - B2_Mm2 SINE B2 -6 189 1 3 720 244 322 96 6 chr3 17801704 17801996 -141797787 - L1MA4A LINE L1 -1710 4433 4090 3 720 1305 193 45 32 chr3 17801997 17802308 -141797475 + Lx4B LINE L1 6739 7053 -5 3 720 628 53 44 18 chr3 17802407 17802521 -141797262 + (TAGA)n Simple_repeat Simple_repeat 1 117 0 3 720 39441 6 1 1 chr3 17802814 17809803 -141789980 - L1Md_A LINE L1 0 6582 1 3 720 433 288 89 60 chr3 17809803 17810313 -141789470 - L1MA4A LINE L1 -2134 4006 3496 3 720 423 0 0 0 chr3 17810557 17810604 -141789179 + (CA)n Simple_repeat Simple_repeat 1 47 0 3 720 3301 34 18 0 chr3 17810627 17811014 -141788769 + MTA_Mm LTR MaLR 1 394 -2 3 720 637 327 145 10 chr3 17811151 17811550 -141788233 - L1MA4A LINE L1 -2663 3480 3028 3 720 255 173 0 0 chr3 17811606 17811658 -141788125 + (TA)n Simple_repeat Simple_repeat 2 53 0 3 720 348 162 53 26 chr3 17811671 17811785 -141787998 + Lx9 LINE L1 7486 7602 -42 3 720 1572 214 83 35 chr3 17812734 17813106 -141786677 - RLTR16 LTR ERVK 0 505 116 3 720 6237 148 72 29 chr3 17813127 17813869 -141785914 - Lx2 LINE L1 0 6997 6254 3 720 2214 129 72 8 chr3 17813869 17814245 -141785538 + RLTR9D LTR ERVK 1 400 -3 3 720 6237 148 72 29 chr3 17814245 17814664 -141785119 - Lx2 LINE L1 -744 6253 5786 3 720 1929 161 39 0 chr3 17814666 17815052 -141784731 - Lx2 LINE L1 -572 5314 4914 3 720 1156 217 4 0 chr3 17815062 17815306 -141784477 - L1VL4 LINE L1 -5864 438 194 3 720 602 320 50 5 chr3 17815592 17815793 -141783990 - B3 SINE B2 -6 210 1 3 720 22 43 0 21 chr3 17815955 17815987 -141783796 + AT_rich Low_complexity Low_complexity 1 32 0 4 720 756 69 0 0 chr3 17815987 17816089 -141783694 + L1_Mus2 LINE L1 6462 6563 -3 4 720 22 43 0 21 chr3 17816089 17816103 -141783680 + AT_rich Low_complexity Low_complexity 1 14 0 4 720 28 61 0 0 chr3 17816187 17816236 -141783547 + AT_rich Low_complexity Low_complexity 1 49 0 4 720 595 269 22 22 chr3 17816259 17816396 -141783387 + B1_Mur3 SINE Alu 2 138 -11 4 720 345 93 0 0 chr3 17816396 17816450 -141783333 + (CCAA)n Simple_repeat Simple_repeat 2 55 0 4 720 21 0 0 0 chr3 17816463 17816484 -141783299 + AT_rich Low_complexity Low_complexity 1 21 0 4 720 407 369 80 17 chr3 17816528 17817162 -141782621 + L1MEc LINE L1 137 810 -5590 4 720 330 298 84 45 chr3 17817267 17817446 -141782337 + L1MEc LINE L1 935 1120 -5280 4 720 329 219 107 25 chr3 17817456 17817578 -141782205 + L1VL2 LINE L1 62 193 -6142 4 720 15540 134 55 24 chr3 17817585 17821974 -141777809 + L1_Mus3 LINE L1 556 5426 -457 4 720 3861 66 4 4 chr3 17821974 17822477 -141777306 - RLTR1C LTR ERV1 0 503 1 4 720 5855 105 83 2 chr3 17822477 17823599 -141776184 + L1_Mus3 LINE L1 5423 6634 -4 4 720 186 279 72 41 chr3 17825051 17825148 -141774635 - MIRm SINE MIR -86 190 91 4 720 783 303 61 18 chr3 17825323 17825666 -141774117 + Lx8 LINE L1 6637 6994 -479 4 721 558 0 0 0 chr3 17825983 17826045 -141773738 + (GA)n Simple_repeat Simple_repeat 1 62 0 4 721 343 303 42 11 chr3 17826325 17826515 -141773268 + L1M4 LINE L1 3930 4125 -2021 4 721 2487 206 80 43 chr3 17826506 17826644 -141773139 + Lx7 LINE L1 6738 6875 -821 4 721 752 83 9 0 chr3 17826644 17826753 -141773030 + (GA)n Simple_repeat Simple_repeat 2 111 0 4 721 2487 206 80 43 chr3 17826753 17827280 -141772503 + Lx7 LINE L1 6876 7426 -270 4 721 494 191 28 44 chr3 17827302 17827483 -141772300 + CT-rich Low_complexity Low_complexity 3 180 0 4 721 455 292 0 11 chr3 17827534 17827714 -141772069 + CT-rich Low_complexity Low_complexity 1 178 0 4 721 202 273 61 0 chr3 17827717 17827783 -141772000 + C-rich Low_complexity Low_complexity 1 70 0 4 721 324 213 18 36 chr3 17827783 17827895 -141771888 + CT-rich Low_complexity Low_complexity 4 113 0 4 721 634 157 128 44 chr3 17827907 17828133 -141771650 + Lx7 LINE L1 7443 7687 -9 4 721 1195 251 42 42 chr3 17828235 17828613 -141771170 + MTEa LTR MaLR 2 379 0 4 721 644 221 26 7 chr3 17828821 17828976 -141770807 + Lx6 LINE L1 7293 7450 -10 4 721 5701 242 53 21 chr3 17828978 17829640 -141770143 - Lx6 LINE L1 -8 7452 6744 4 721 354 23 0 0 chr3 17829640 17829683 -141770100 + (TG)n Simple_repeat Simple_repeat 2 44 0 4 721 5701 242 53 21 chr3 17829683 17830612 -141769171 - Lx6 LINE L1 -717 6743 5810 4 721 729 275 35 7 chr3 17830631 17830917 -141768866 - L1_Mur3 LINE L1 -2043 3837 3544 4 721 5739 164 18 0 chr3 17830927 17831921 -141767862 - Lx2 LINE L1 0 6997 5986 4 721 3558 78 4 6 chr3 17831924 17832412 -141767371 + RLTR1C LTR ERV1 1 487 -16 4 721 5354 135 18 5 chr3 17832431 17833538 -141766245 - Lx2 LINE L1 -1014 5983 4857 4 721 1485 152 4 0 chr3 17833541 17833805 -141765978 - L1_Mur2 LINE L1 -824 5053 4789 4 721 8479 137 4 11 chr3 17833806 17835227 -141764556 - Lx2 LINE L1 0 6997 5587 4 721 277 302 27 7 chr3 17835244 17835358 -141764425 - PB1D10 SINE Alu -6 143 27 4 721 278 186 26 85 chr3 17836466 17836619 -141763164 + T-rich Low_complexity Low_complexity 2 145 0 4 721 225 0 0 0 chr3 17836944 17836969 -141762814 + (T)n Simple_repeat Simple_repeat 1 25 0 4 721 574 324 70 65 chr3 17837047 17837484 -141762299 + RLTR12B LTR ERVK 25 352 -216 4 721 484 347 61 20 chr3 17837503 17837650 -141762133 - B4A SINE B4 -121 171 19 4 721 648 295 84 16 chr3 17837684 17837901 -141761882 - L1_Mur2 LINE L1 -1013 4864 4620 4 721 252 0 0 0 chr3 17837901 17837929 -141761854 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 4 721 648 295 84 16 chr3 17837929 17838149 -141761634 - L1_Mur2 LINE L1 -1258 4619 4397 4 721 403 289 52 54 chr3 17838270 17838409 -141761374 + RLTR17 LTR ERVK 60 219 -358 4 721 225 0 0 0 chr3 17838409 17838434 -141761349 + (GA)n Simple_repeat Simple_repeat 1 25 0 4 721 403 297 112 122 chr3 17838434 17838785 -141760998 + RLTR17 LTR ERVK 208 566 -126 4 721 2011 209 53 35 chr3 17838951 17839502 -141760281 + RLTR31_Mm LTR ERVK 1 561 0 4 721 22 56 0 0 chr3 17839695 17839731 -141760052 + AT_rich Low_complexity Low_complexity 1 36 0 4 721 330 285 102 9 chr3 17839816 17840059 -141759724 + Lx7 LINE L1 5704 5969 -1675 4 721 23 0 0 0 chr3 17840795 17840818 -141758965 + AT_rich Low_complexity Low_complexity 1 23 0 4 721 665 311 81 37 chr3 17841063 17841360 -141758423 - MT2A LTR ERVL -138 395 86 4 721 379 238 14 19 chr3 17843126 17843225 -141756558 - ORR1E LTR MaLR 0 379 263 4 721 3908 139 79 5 chr3 17843225 17843869 -141755914 - RLTR17 LTR ERVK 0 692 1 4 721 592 253 103 13 chr3 17843879 17844035 -141755748 - ORR1E LTR MaLR -110 249 80 4 721 3960 95 2 3 chr3 17844085 17844685 -141755098 + Lx3B LINE L1 5325 5921 -1052 4 721 744 271 23 101 chr3 17844859 17845167 -141754616 - Lx9 LINE L1 -960 6684 6401 4 721 261 337 24 0 chr3 17845507 17845590 -141754193 - MLT1H2 LTR MaLR -317 172 88 4 721 21 0 0 0 chr3 17845685 17845706 -141754077 + AT_rich Low_complexity Low_complexity 1 21 0 4 721 263 370 16 8 chr3 17845884 17846012 -141753771 - MLT1H2-int LTR MaLR -265 1224 1096 4 721 3244 92 258 1 chr3 17846270 17846735 -141753048 - L1_Mus1 LINE L1 -679 5888 5284 4 721 213 39 0 0 chr3 17846735 17846761 -141753022 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 4 721 3244 84 268 0 chr3 17846761 17846900 -141752883 - L1_Mus1 LINE L1 -603 5283 5134 4 721 7192 105 39 1 chr3 17846900 17847977 -141751806 + Lx3_Mus LINE L1 5884 7001 -8 4 721 352 236 105 35 chr3 17848130 17848244 -141751539 - ORR1D1 LTR MaLR -28 346 225 4 721 226 253 85 37 chr3 17848332 17848414 -141751369 - RLTR20D LTR ERVK -409 154 69 4 721 1552 103 11 45 chr3 17849109 17849374 -141750409 - L1_Mus3 LINE L1 -2 6636 6381 4 721 948 348 36 30 chr3 17849818 17850183 -141749600 - MTE2b LTR MaLR -12 367 1 4 721 528 267 80 40 chr3 17850278 17850477 -141749306 + RMER15 LTR ERVL 299 505 -70 4 721 400 219 10 30 chr3 17850456 17850555 -141749228 - RLTR20D LTR ERVK -471 97 1 4 721 186 43 0 0 chr3 17851073 17851096 -141748687 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 4 721 4377 143 7 23 chr3 17851100 17851825 -141747958 - Lx2 LINE L1 -1 6996 6284 4 721 539 194 68 29 chr3 17852603 17852784 -141746999 - ORR1D2 LTR MaLR -14 405 231 4 721 27 0 0 0 chr3 17853049 17853076 -141746707 + AT_rich Low_complexity Low_complexity 1 27 0 4 721 3586 195 40 4 chr3 17853303 17854137 -141745646 + L1_Mur2 LINE L1 2235 3098 -2779 4 721 2545 115 51 40 chr3 17854142 17854612 -141745171 - IAPLTR2_Mm LTR ERVK 0 475 1 4 721 24919 18 4 0 chr3 17854612 17857556 -141742227 - IAPEz-int LTR ERVK 0 6481 3525 4 721 885 73 24 0 chr3 17857556 17857679 -141742104 - IAPEz-int LTR ERVK -2770 4910 4785 4 721 1706 123 4 4 chr3 17857676 17857938 -141741845 - IAPEz-int LTR ERVK -5183 2497 2236 4 721 424 38 0 0 chr3 17857937 17857990 -141741793 - IAPEz-int LTR ERVK -5070 1411 1359 4 721 5030 43 6 14 chr3 17857990 17858650 -141741133 - IAPEz-int LTR ERVK -5819 662 8 4 721 2545 115 51 40 chr3 17858650 17859120 -141740663 - IAPLTR2_Mm LTR ERVK 0 475 1 4 721 4934 160 38 5 chr3 17859124 17859838 -141739945 + L1_Mur2 LINE L1 3102 3843 -2034 4 721 261 0 0 0 chr3 17859838 17859867 -141739916 + (CAA)n Simple_repeat Simple_repeat 2 30 0 4 721 4934 160 38 5 chr3 17859867 17860144 -141739639 + L1_Mur2 LINE L1 3844 4125 -1752 4 721 22469 70 11 1 chr3 17860153 17863995 -141735788 - L1Md_F2 LINE L1 -1 6581 2700 4 721 19240 111 8 7 chr3 17864021 17867833 -141731950 + L1_Mus1 LINE L1 2754 6567 0 4 721 4645 202 73 15 chr3 17867828 17868961 -141730822 + Lx4B LINE L1 5783 6981 -77 4 721 184 252 20 20 chr3 17869570 17869639 -141730144 + (TATG)n Simple_repeat Simple_repeat 4 74 0 4 721 2871 6 3 0 chr3 17869639 17869960 -141729823 + RLTRETN_Mm LTR ERVK 1 322 0 4 721 184 252 20 20 chr3 17869960 17869991 -141729792 + (TATG)n Simple_repeat Simple_repeat 2 31 0 4 721 470 165 0 10 chr3 17870062 17870166 -141729617 + (TG)n Simple_repeat Simple_repeat 2 104 0 4 721 463 225 0 26 chr3 17870183 17870338 -141729445 + (TATATG)n Simple_repeat Simple_repeat 6 156 0 4 721 1016 267 32 43 chr3 17871053 17871331 -141728452 - ORR1D2 LTR MaLR -95 275 1 4 721 885 122 6 13 chr3 17871547 17871705 -141728078 + (CCCCCT)n Simple_repeat Simple_repeat 1 157 0 4 721 772 38 0 19 chr3 17871691 17871797 -141727986 + (TTC)n Simple_repeat Simple_repeat 3 106 0 4 721 982 135 22 6 chr3 17871810 17871989 -141727794 - Lx3_Mus LINE L1 -2 6979 6798 4 721 5082 84 2 14 chr3 17871989 17872829 -141726954 - Lx3_Mus LINE L1 -1027 5982 5159 4 721 2939 98 9 2 chr3 17872828 17873324 -141726459 - Lx3_Mus LINE L1 -4175 1711 1203 4 721 5902 137 36 32 chr3 17873402 17873522 -141726261 - Lx LINE L1 -6 6648 6535 4 721 180 0 0 0 chr3 17873522 17873542 -141726241 + (CCCA)n Simple_repeat Simple_repeat 2 21 0 4 721 5902 135 29 19 chr3 17873542 17874701 -141725082 - Lx LINE L1 -120 6534 5357 4 721 36207 31 1 0 chr3 17874702 17881589 -141718194 - L1Md_T LINE L1 0 6585 2 4 721 4190 149 7 9 chr3 17881590 17882355 -141717428 - Lx LINE L1 -515 5368 4606 4 721 4006 137 26 11 chr3 17882358 17883081 -141716702 + Lx LINE L1 3887 4620 -1263 4 721 4976 134 195 45 chr3 17883070 17883305 -141716478 - Lx3_Mus LINE L1 -5713 1271 1078 4 721 4849 38 3 0 chr3 17883305 17883888 -141715895 - L1Md_F3 LINE L1 -1 6583 5999 4 721 4976 134 195 45 chr3 17883888 17884754 -141715029 - Lx3_Mus LINE L1 -5907 1077 4 4 721 2092 77 30 20 chr3 17885191 17885495 -141714288 - IAPLTR2b LTR ERVK -20 307 1 4 721 198 375 0 24 chr3 17886134 17886216 -141713567 - L2b LINE L2 -220 3155 3076 4 721 200 111 0 27 chr3 17887620 17887657 -141712126 + (TTA)n Simple_repeat Simple_repeat 1 36 0 4 721 398 277 164 62 chr3 17887693 17887839 -141711944 - RSINE1 SINE B4 -1 164 4 4 721 1456 101 9 9 chr3 17887928 17888148 -141711635 + L1_Mus3 LINE L1 6413 6632 -6 4 721 22 0 0 0 chr3 17888153 17888175 -141711608 + AT_rich Low_complexity Low_complexity 1 22 0 4 721 317 326 23 23 chr3 17888958 17889053 -141710730 + L1MCc LINE L1 19 115 -6308 4 721 3141 125 58 18 chr3 17889053 17889566 -141710217 - Lx LINE L1 0 6654 6121 4 721 317 326 23 23 chr3 17889566 17889602 -141710181 + L1MCc LINE L1 116 150 -6273 4 721 297 0 0 0 chr3 17889635 17889668 -141710115 + (CAA)n Simple_repeat Simple_repeat 2 34 0 4 721 4372 52 0 9 chr3 17889711 17890255 -141709528 + L1Md_F2 LINE L1 6030 6568 -14 4 721 22 0 0 0 chr3 17890376 17890398 -141709385 + AT_rich Low_complexity Low_complexity 1 22 0 4 721 642 329 50 14 chr3 17890532 17890813 -141708970 + MER68 LTR ERVL 264 554 -9 4 721 388 229 42 34 chr3 17890820 17890967 -141708816 + L1M5 LINE L1 5435 5593 -740 4 721 438 318 50 41 chr3 17891066 17891286 -141708497 + L1MD1 LINE L1 5733 5954 -288 4 721 34403 45 0 5 chr3 17891328 17896475 -141703308 + L1Md_A LINE L1 531 5589 -297 4 721 8565 27 0 0 chr3 17896476 17897471 -141702312 + L1Md_A LINE L1 5591 6585 0 4 721 23 68 0 0 chr3 17897473 17897517 -141702266 + AT_rich Low_complexity Low_complexity 1 44 0 4 721 1137 105 6 0 chr3 17897559 17897721 -141702062 + B2_Mm1t SINE B2 1 163 -30 4 721 807 11 0 0 chr3 17897721 17897813 -141701970 + (GAAA)n Simple_repeat Simple_repeat 2 93 0 4 721 548 269 8 0 chr3 17897813 17897943 -141701840 + ID_B1 SINE B4 74 204 -20 4 721 432 0 0 0 chr3 17897946 17897994 -141701789 + (TTG)n Simple_repeat Simple_repeat 2 49 0 5 721 21 71 0 0 chr3 17898324 17898366 -141701417 + AT_rich Low_complexity Low_complexity 1 42 0 5 721 432 0 0 0 chr3 17898370 17898418 -141701365 + (TA)n Simple_repeat Simple_repeat 2 49 0 5 721 546 16 0 0 chr3 17898743 17898806 -141700977 + (TA)n Simple_repeat Simple_repeat 1 63 0 5 721 549 250 88 60 chr3 17899751 17900036 -141699747 + RLTR10D LTR ERVK 1 293 -66 5 721 186 43 0 0 chr3 17901667 17901690 -141698093 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 5 721 1840 173 112 2 chr3 17901703 17902097 -141697686 - Lx3C LINE L1 -7 6969 6533 5 721 1820 132 72 3 chr3 17902094 17902414 -141697369 - L1_Mur1 LINE L1 -142 5744 5403 5 721 265 337 68 40 chr3 17903698 17903874 -141695909 + MIR SINE MIR 26 206 -56 5 721 1032 192 42 5 chr3 17903941 17904155 -141695628 - URR1B DNA MER1_type -3 222 1 5 721 1378 209 19 15 chr3 17904273 17904535 -141695248 + RMER4A LTR ERVK 8 270 -196 5 721 3988 236 85 76 chr3 17904562 17905826 -141693957 + MYSERV16_I-int LTR ERVK 334 1570 -756 5 721 6640 48 1 0 chr3 17905826 17906631 -141693152 - L1_Mus1 LINE L1 -1 6566 5761 5 721 3988 236 85 76 chr3 17906631 17907132 -141692651 + MYSERV16_I-int LTR ERVK 1571 2114 -212 5 721 1015 139 19 0 chr3 17907168 17907326 -141692457 - ORR1B1 LTR MaLR -49 345 185 5 721 283 185 123 0 chr3 17907330 17907411 -141692372 + MYSERV6-int LTR ERVK 8799 8889 -70 5 721 1771 167 22 25 chr3 17907455 17907811 -141691972 + RLTR15 LTR ERVK 1 355 -4 5 721 438 238 48 16 chr3 17907826 17907903 -141691880 + RMER4A LTR ERVK 270 345 -121 5 721 732 80 0 0 chr3 17907903 17908003 -141691780 + (TCTCCC)n Simple_repeat Simple_repeat 3 102 0 5 721 438 238 48 16 chr3 17908003 17908049 -141691734 + RMER4A LTR ERVK 346 397 -69 5 721 2849 177 76 16 chr3 17908049 17908756 -141691027 - L1_Mur3 LINE L1 -2840 3040 2291 5 721 213 213 0 0 chr3 17909500 17909547 -141690236 + GA-rich Low_complexity Low_complexity 1 47 0 5 721 237 254 16 0 chr3 17909584 17909647 -141690136 + GA-rich Low_complexity Low_complexity 1 64 0 5 721 1010 201 85 139 chr3 17911512 17911684 -141688099 - L1_Mur3 LINE L1 -3566 2314 2138 5 721 1067 159 9 14 chr3 17911684 17911894 -141687889 + Lx2 LINE L1 6789 6997 0 5 721 1010 201 85 139 chr3 17911894 17912100 -141687683 - L1_Mur3 LINE L1 -3743 2137 1948 5 721 1075 88 0 0 chr3 17912100 17912236 -141687547 + B1_Mus2 SINE Alu 2 137 -10 5 721 207 0 0 0 chr3 17912236 17912259 -141687524 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 5 721 1010 201 85 139 chr3 17912259 17912339 -141687444 - L1_Mur3 LINE L1 -3933 1947 1880 5 721 433 246 158 79 chr3 17912339 17912542 -141687241 + RMER20B LTR ERVK 1 219 -408 5 721 207 0 0 0 chr3 17912599 17912622 -141687161 + (A)n Simple_repeat Simple_repeat 1 23 0 5 721 408 228 98 10 chr3 17912626 17912728 -141687055 + RMER20B LTR ERVK 147 257 -370 5 721 231 275 32 32 chr3 17912781 17912875 -141686908 + RMER20B LTR ERVK 329 422 -94 5 721 1503 205 22 0 chr3 17913059 17913415 -141686368 - L1_Mur3 LINE L1 -3996 1884 1521 5 721 360 326 29 0 chr3 17913414 17913552 -141686231 - L1_Mur3 LINE L1 -7218 510 369 5 721 956 33 0 8 chr3 17913657 17913778 -141686005 - B1_Mus1 SINE Alu 0 148 29 5 721 731 324 10 43 chr3 17913784 17914376 -141685407 - L1M3 LINE L1 -852 5025 4452 5 721 751 280 97 73 chr3 17915728 17916098 -141683685 - MTEb LTR MaLR 0 379 1 5 721 468 0 0 0 chr3 17916492 17916544 -141683239 + (TTG)n Simple_repeat Simple_repeat 2 53 0 5 721 1575 156 152 22 chr3 17916575 17916890 -141682893 + ORR1B1 LTR MaLR 39 394 0 5 721 27 0 0 0 chr3 17916995 17917022 -141682761 + AT_rich Low_complexity Low_complexity 1 27 0 5 721 4251 69 4 2 chr3 17917145 17917699 -141682084 + L1_Mus2 LINE L1 6011 6565 -1 5 721 301 244 158 38 chr3 17918074 17918257 -141681526 - L1M2 LINE L1 -2916 3227 3023 5 721 1132 83 0 0 chr3 17918278 17918423 -141681360 - B1_Mus2 SINE Alu -2 145 1 5 721 378 314 56 13 chr3 17919393 17919696 -141680087 - L1MC3 LINE L1 -8 7777 7462 5 721 4727 156 30 18 chr3 17919850 17920690 -141679093 + Lx2 LINE L1 6148 6997 0 5 721 212 174 130 0 chr3 17920824 17920870 -141678913 + ID4_ SINE ID 1 52 -31 5 721 2880 58 13 3 chr3 17920931 17921311 -141678472 - MTB LTR MaLR -16 384 1 5 721 409 280 43 0 chr3 17922193 17922286 -141677497 + PB1D10 SINE Alu 3 99 -18 5 721 521 97 21 0 chr3 17922286 17922379 -141677404 + (TCTG)n Simple_repeat Simple_repeat 2 96 0 5 721 372 22 0 0 chr3 17922379 17922424 -141677359 + (CA)n Simple_repeat Simple_repeat 1 45 0 5 721 468 0 0 0 chr3 17922621 17922673 -141677110 + (GGAA)n Simple_repeat Simple_repeat 4 55 0 5 721 309 261 87 35 chr3 17922676 17922791 -141676992 + HAL1-3A_ME LINE L1 2284 2404 -454 5 721 201 108 0 0 chr3 17922930 17922967 -141676816 + (A)n Simple_repeat Simple_repeat 1 37 0 5 721 309 215 207 0 chr3 17923057 17923178 -141676605 + L1M3c LINE L1 1434 1579 -4562 5 721 340 330 21 0 chr3 17923180 17923274 -141676509 + ID_B1 SINE B4 98 193 -31 5 721 260 137 20 0 chr3 17923312 17923363 -141676420 + GA-rich Low_complexity Low_complexity 4 55 0 5 721 542 348 78 28 chr3 17923365 17923687 -141676096 + L1M4c LINE L1 1273 1610 -4774 5 721 650 259 276 6 chr3 17923705 17924024 -141675759 + MTD LTR MaLR 15 419 0 5 721 624 290 69 16 chr3 17924203 17924219 -141675564 + L1MB1 LINE L1 5602 5617 -551 5 721 4746 55 5 0 chr3 17924219 17924803 -141674980 - LTRIS_Mus LTR ERV1 0 587 1 5 721 624 290 69 16 chr3 17924803 17925105 -141674678 + L1MB1 LINE L1 5618 5937 -231 5 721 298 330 96 48 chr3 17925111 17925340 -141674443 + B4 SINE B4 26 265 -27 5 721 182 105 26 0 chr3 17928032 17928070 -141671713 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 5 721 460 275 38 107 chr3 17928231 17928390 -141671393 - RSINE1 SINE B4 -2 163 16 5 721 21 0 0 0 chr3 17929292 17929313 -141670470 + AT_rich Low_complexity Low_complexity 1 21 0 5 721 824 320 15 6 chr3 17929485 17929818 -141669965 - Lx7 LINE L1 -396 7300 6965 5 721 971 182 45 10 chr3 17929833 17930033 -141669750 + Lx7 LINE L1 6638 6844 -852 5 721 416 147 50 25 chr3 17930064 17930183 -141669600 + CT-rich Low_complexity Low_complexity 5 126 0 5 721 1916 231 9 106 chr3 17930197 17930724 -141669059 + RMER19C LTR ERVK 3 478 -133 5 721 6835 110 19 7 chr3 17930756 17932279 -141667504 - L1_Mus4 LINE L1 -9 6627 5092 5 721 37512 29 1 6 chr3 17932285 17938274 -141661509 - L1Md_T LINE L1 0 6582 631 5 721 2268 138 31 17 chr3 17938275 17938696 -141661087 - L1_Mur2 LINE L1 -778 5099 4673 5 721 342 0 0 0 chr3 17939812 17939850 -141659933 + (CA)n Simple_repeat Simple_repeat 1 38 0 5 721 243 226 0 0 chr3 17939877 17939930 -141659853 + (TG)n Simple_repeat Simple_repeat 2 54 0 5 721 708 291 73 54 chr3 17939942 17940203 -141659580 + B4A SINE B4 5 270 -22 5 721 21 36 0 0 chr3 17940287 17940315 -141659468 + AT_rich Low_complexity Low_complexity 1 28 0 5 721 31 44 0 0 chr3 17940473 17940518 -141659265 + AT_rich Low_complexity Low_complexity 1 45 0 5 721 301 336 20 0 chr3 17940612 17940758 -141659025 + (TATG)n Simple_repeat Simple_repeat 3 151 0 5 721 518 320 49 34 chr3 17940777 17940814 -141658969 - B3 SINE B2 -9 207 166 5 721 393 22 0 0 chr3 17940814 17940860 -141658923 + (TG)n Simple_repeat Simple_repeat 2 47 0 5 721 573 286 25 25 chr3 17940860 17941026 -141658757 - B3A SINE B2 -51 165 1 5 721 24 0 0 0 chr3 17941694 17941718 -141658065 + AT_rich Low_complexity Low_complexity 1 24 0 5 721 347 262 49 1 chr3 17941937 17942032 -141657751 - PB1D10 SINE Alu -29 118 19 5 721 296 137 19 19 chr3 17942045 17942097 -141657686 - B3 SINE B2 -160 56 5 5 721 183 162 0 0 chr3 17942130 17942167 -141657616 + (TTA)n Simple_repeat Simple_repeat 3 39 0 5 721 703 279 117 19 chr3 17943036 17943292 -141656491 - B4A SINE B4 -2 290 10 5 721 21 0 0 0 chr3 17943488 17943509 -141656274 + AT_rich Low_complexity Low_complexity 1 21 0 5 721 260 306 20 20 chr3 17945704 17945804 -141653979 - PB1D7 SINE Alu -20 100 1 5 721 296 60 40 0 chr3 17946677 17946727 -141653056 + (TTTG)n Simple_repeat Simple_repeat 2 53 0 5 721 402 21 0 0 chr3 17948133 17948180 -141651603 + (TC)n Simple_repeat Simple_repeat 1 47 0 5 721 357 82 0 0 chr3 17948184 17948233 -141651550 + (TA)n Simple_repeat Simple_repeat 1 49 0 5 721 21 0 0 0 chr3 17948233 17948254 -141651529 + AT_rich Low_complexity Low_complexity 1 21 0 5 721 228 309 0 0 chr3 17954608 17954676 -141645107 + GA-rich Low_complexity Low_complexity 1 68 0 5 721 207 139 0 0 chr3 17955375 17955411 -141644372 + (CGG)n Simple_repeat Simple_repeat 2 37 0 5 722 183 100 0 0 chr3 17959769 17959799 -141639984 + (CA)n Simple_repeat Simple_repeat 2 31 0 5 722 1131 77 0 0 chr3 17963899 17964054 -141635729 + (TG)n Simple_repeat Simple_repeat 2 156 0 5 722 24 85 0 0 chr3 17964428 17964487 -141635296 + AT_rich Low_complexity Low_complexity 1 59 0 5 722 208 260 0 0 chr3 17965282 17965332 -141634451 + (TATATG)n Simple_repeat Simple_repeat 2 51 0 5 722 272 329 51 0 chr3 17965337 17965416 -141634367 - RSINE1 SINE B4 0 165 83 5 722 28 61 0 0 chr3 17965579 17965628 -141634155 + AT_rich Low_complexity Low_complexity 1 49 0 5 722 1412 318 31 34 chr3 17965846 17966494 -141633289 + Lx8 LINE L1 6172 6817 -656 5 722 288 354 40 10 chr3 17966503 17966703 -141633080 + Lx8 LINE L1 7209 7414 -59 5 722 367 264 77 98 chr3 17966760 17966903 -141632880 - B3A SINE B2 -4 194 55 5 722 685 144 0 8 chr3 17966903 17967022 -141632761 - L1_Mur2 LINE L1 -2002 3875 3758 5 722 336 130 0 0 chr3 17967022 17967091 -141632692 + (T)n Simple_repeat Simple_repeat 1 69 0 5 722 2488 77 0 0 chr3 17967119 17967446 -141632337 - Lx3_Mus LINE L1 -358 6651 6325 5 722 3182 228 93 54 chr3 17967445 17968620 -141631163 + Lx4B LINE L1 5836 7056 -2 5 722 304 261 26 86 chr3 17969030 17969181 -141630602 + L1MA9 LINE L1 6014 6155 -157 5 722 3156 24 45 8 chr3 17969275 17969657 -141630126 + MTA_Mm LTR MaLR 1 396 0 5 722 7801 82 19 3 chr3 17969657 17970737 -141629046 + MTA_Mm-int LTR MaLR 1 1098 0 5 722 3419 30 0 2 chr3 17970737 17971134 -141628649 + MTA_Mm LTR MaLR 1 396 0 5 722 257 298 12 23 chr3 17972985 17973071 -141626712 - MLT1A1 LTR MaLR -19 389 305 5 722 594 0 0 0 chr3 17973381 17973447 -141626336 + (TA)n Simple_repeat Simple_repeat 1 66 0 5 722 7216 74 6 1 chr3 17974695 17976405 -141623378 - L1_Mus2 LINE L1 -1 6565 4846 5 722 1127 48 14 7 chr3 17977625 17977771 -141622012 - B1_Mm SINE Alu 0 147 1 6 722 1011 52 90 0 chr3 17979119 17979253 -141620530 - B1_Mm SINE Alu 0 147 2 6 722 375 23 0 0 chr3 17983198 17983242 -141616541 + (CA)n Simple_repeat Simple_repeat 1 44 0 6 722 483 48 0 0 chr3 17983681 17983743 -141616040 + (TG)n Simple_repeat Simple_repeat 1 62 0 6 722 246 279 16 0 chr3 17983786 17983847 -141615936 - RSINE1 SINE B4 -102 63 2 6 722 324 284 0 12 chr3 17984034 17984116 -141615667 - ID2 SINE ID -1 82 2 6 722 301 316 13 0 chr3 17984182 17984258 -141615525 - ID SINE ID -136 88 12 6 722 891 71 21 0 chr3 17984287 17984428 -141615355 + (TCCC)n Simple_repeat Simple_repeat 1 144 0 6 722 255 316 13 0 chr3 17984451 17984530 -141615253 - PB1D10 SINE Alu -14 103 24 6 722 215 260 48 72 chr3 17985054 17985137 -141614646 + MER5B DNA MER1_type 17 97 -81 6 722 499 234 115 19 chr3 17985163 17985320 -141614463 + MER5B DNA MER1_type 2 173 -5 6 722 248 338 0 12 chr3 17985599 17985680 -141614103 + ID4 SINE ID 1 80 -3 6 722 4733 198 45 3 chr3 17986677 17987798 -141611985 + Lx6 LINE L1 298 1469 -4411 6 722 3410 158 38 1 chr3 17987793 17988501 -141611282 + Lx6 LINE L1 3156 3889 -1991 6 722 8277 91 26 35 chr3 17988490 17990320 -141609463 + Lx3_Mus LINE L1 5192 6998 -11 6 722 189 0 0 0 chr3 17990332 17990353 -141609430 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 6 722 7184 197 42 41 chr3 17990359 17992201 -141607582 + Lx6 LINE L1 3886 5729 -151 6 722 824 252 70 0 chr3 17992199 17992441 -141607342 + Lx6 LINE L1 6019 6277 -1183 6 722 1401 258 178 8 chr3 17992439 17992970 -141606813 + Lx6 LINE L1 6520 7135 -325 6 722 198 71 0 0 chr3 17992970 17992998 -141606785 + (TG)n Simple_repeat Simple_repeat 2 29 0 6 722 1340 271 87 18 chr3 17992998 17993271 -141606512 + Lx6 LINE L1 7136 7434 -26 6 722 2681 109 10 2 chr3 17993421 17993818 -141605965 + MTB LTR MaLR 1 400 0 6 722 239 33 0 0 chr3 17994582 17994612 -141605171 - L1_Mm LINE L1 -1034 4849 4820 6 722 8286 23 0 1 chr3 17994612 17995566 -141604217 + L1Md_T LINE L1 5630 6582 0 6 722 205 317 0 24 chr3 17995908 17995992 -141603791 + CT-rich Low_complexity Low_complexity 2 83 0 6 722 269 109 0 21 chr3 17998347 17998394 -141601389 + (TCTCCC)n Simple_repeat Simple_repeat 3 48 0 6 722 236 200 20 20 chr3 17999247 17999298 -141600485 + CT-rich Low_complexity Low_complexity 2 52 0 6 722 902 313 57 4 chr3 17999623 17999886 -141599897 - B4A SINE B4 -12 280 4 6 722 269 304 127 0 chr3 18001991 18002070 -141597713 - PB1D10 SINE Alu 0 117 29 1 722 666 118 0 0 chr3 18002073 18002175 -141597608 + (CACG)n Simple_repeat Simple_repeat 1 102 0 2 722 641 228 25 0 chr3 18002388 18002550 -141597233 - Lx5 LINE L1 0 7050 6885 3 722 312 328 49 56 chr3 18003061 18003203 -141596580 + Kanga11a DNA Tc2 15 155 -815 4 722 853 230 71 0 chr3 18004322 18004518 -141595265 - B3 SINE B2 -3 213 4 5 722 1090 285 123 20 chr3 18004597 18004955 -141594828 + MTD LTR MaLR 18 412 -7 6 722 24 67 0 0 chr3 18005854 18005899 -141593884 + AT_rich Low_complexity Low_complexity 1 45 0 7 722 387 0 0 0 chr3 18006340 18006383 -141593400 + (TG)n Simple_repeat Simple_repeat 1 43 0 8 722 558 0 0 0 chr3 18006383 18006444 -141593339 + (GA)n Simple_repeat Simple_repeat 1 62 0 9 722 211 243 75 75 chr3 18006682 18006762 -141593021 - PB1D7 SINE Alu -38 82 3 1 722 366 397 14 7 chr3 18006875 18007017 -141592766 - B4A SINE B4 -4 288 146 1 722 508 262 97 0 chr3 18007071 18007216 -141592567 - B4A SINE B4 -131 161 3 1 722 431 272 152 26 chr3 18008396 18008494 -141591289 + B3 SINE B2 47 140 -76 1 722 405 39 0 0 chr3 18008494 18008545 -141591238 + (TG)n Simple_repeat Simple_repeat 2 52 0 1 722 431 272 152 26 chr3 18008545 18008561 -141591222 + B3 SINE B2 141 174 -42 1 722 2786 109 20 10 chr3 18008561 18008960 -141590823 + MTB_Mm LTR MaLR 5 407 0 1 722 431 272 152 26 chr3 18008960 18008995 -141590788 + B3 SINE B2 175 214 -2 1 722 1002 151 0 0 chr3 18009938 18010110 -141589673 + T-rich Low_complexity Low_complexity 2 173 0 1 722 1139 62 7 14 chr3 18010156 18010304 -141589479 - B1_Mm SINE Alu 0 147 1 1 722 952 157 33 6 chr3 18010315 18010495 -141589288 - Lx LINE L1 -7 6647 6463 1 722 586 252 232 8 chr3 18012470 18012850 -141586933 + L1MC LINE L1 3476 3940 -2206 1 722 657 278 130 29 chr3 18012907 18013377 -141586406 + L1MB1 LINE L1 5049 5585 -598 2 722 939 85 0 0 chr3 18013377 18013507 -141586276 + (GAA)n Simple_repeat Simple_repeat 2 131 0 2 722 638 275 68 23 chr3 18013507 18013771 -141586012 + L1MB1 LINE L1 5587 5862 -306 2 722 7312 77 0 1 chr3 18013804 18015080 -141584703 + L1_Mus1 LINE L1 5294 6567 0 2 722 362 346 11 5 chr3 18015096 18015285 -141584498 + L1MB1 LINE L1 5858 6047 -121 2 722 465 236 55 39 chr3 18015288 18015416 -141584367 + B3 SINE B2 87 216 0 2 722 261 226 51 171 chr3 18015434 18015610 -141584173 + L1MC LINE L1 4316 4470 -1676 1 722 403 300 125 7 chr3 18015647 18015952 -141583831 + L1MC LINE L1 4611 4951 -1195 1 722 264 270 77 17 chr3 18015976 18016093 -141583690 + L1MC LINE L1 4987 5110 -1036 1 722 424 278 90 8 chr3 18016109 18016243 -141583540 + Charlie1 DNA MER1_type 893 1037 -1744 2 722 1101 82 3 7 chr3 18016559 18016856 -141582927 + (TCTA)n Simple_repeat Simple_repeat 1 295 0 2 722 226 320 0 0 chr3 18016997 18017097 -141582686 + T-rich Low_complexity Low_complexity 1 100 0 2 722 508 285 173 18 chr3 18018194 18018362 -141581421 - B3 SINE B2 -8 208 15 2 722 721 286 190 43 chr3 18020589 18020889 -141578894 - MTEa LTR MaLR -35 344 1 2 722 1488 141 215 4 chr3 18021279 18021549 -141578234 + ORR1A2 LTR MaLR 1 327 0 2 722 3242 43 2 10 chr3 18021811 18022210 -141577573 + MTA_Mm LTR MaLR 1 396 0 3 722 3032 196 55 44 chr3 18022269 18022977 -141576806 + Lx5 LINE L1 6260 6975 -75 3 722 215 135 0 26 chr3 18023007 18023045 -141576738 + (CAAA)n Simple_repeat Simple_repeat 3 39 0 3 722 307 316 26 17 chr3 18024595 18024711 -141575072 + MLT1A0 LTR MaLR 1 117 -248 3 722 2136 178 7 30 chr3 18024705 18025133 -141574650 + ORR1A2-int LTR MaLR 987 1404 -105 2 722 1637 166 10 0 chr3 18025134 18025448 -141574335 + MusHAL1 LINE L1 1697 2013 -699 3 722 766 222 8 1 chr3 18025449 18025621 -141574162 + Lx4B LINE L1 6323 6492 -516 3 722 225 0 0 0 chr3 18025720 18025745 -141574038 + (A)n Simple_repeat Simple_repeat 1 25 0 3 722 312 280 9 57 chr3 18026597 18026703 -141573080 - PB1 SINE Alu -2 125 25 3 722 1888 191 82 8 chr3 18026720 18027121 -141572662 + RLTR25B LTR ERVK 594 1024 -4 3 722 216 315 53 27 chr3 18027140 18027215 -141572568 + L2b LINE L2 3297 3373 -2 3 722 396 0 0 0 chr3 18027962 18028006 -141571777 + (TCTA)n Simple_repeat Simple_repeat 3 46 0 4 722 197 309 86 0 chr3 18028073 18028154 -141571629 - MIRb SINE MIR -11 257 170 4 722 426 112 56 0 chr3 18028219 18028326 -141571457 + (CAGA)n Simple_repeat Simple_repeat 2 114 0 4 722 4295 55 13 7 chr3 18028378 18028930 -141570853 + L1_Mus3 LINE L1 6076 6630 -8 4 722 1972 218 58 36 chr3 18029029 18029533 -141570250 - RMER1B Other Other 0 1066 552 4 722 557 135 67 0 chr3 18030072 18030161 -141569622 + MTC LTR MaLR 1 95 -326 4 722 650 239 206 6 chr3 18030298 18030609 -141569174 + RMER1B Other Other 6 380 -686 4 722 997 216 30 13 chr3 18030641 18030871 -141568912 + RMER1A Other Other 782 1015 -15 4 722 2021 147 16 9 chr3 18030888 18031204 -141568579 + MTC LTR MaLR 104 421 0 4 722 1367 77 56 0 chr3 18031442 18031637 -141568146 + L1_Mus2 LINE L1 6360 6565 -1 4 722 681 101 0 0 chr3 18032337 18032436 -141567347 + (TTTCC)n Simple_repeat Simple_repeat 2 100 0 4 722 671 265 10 8 chr3 18035135 18035326 -141564457 + MLT2C1 LTR ERVL 8 202 -212 4 722 547 277 69 8 chr3 18035323 18035454 -141564329 + B4 SINE B4 5 143 -149 5 722 383 106 15 0 chr3 18035519 18035585 -141564198 + (CA)n Simple_repeat Simple_repeat 1 67 0 5 722 232 295 12 49 chr3 18035591 18035622 -141564161 + polypurine Low_complexity Low_complexity 4 35 0 5 722 1229 61 0 22 chr3 18035622 18035806 -141563977 + (GGGGA)n Simple_repeat Simple_repeat 1 180 0 5 722 2232 84 132 11 chr3 18035807 18036155 -141563628 + RLTR10 LTR ERVK 1 390 0 5 722 232 295 12 49 chr3 18036155 18036203 -141563580 + polypurine Low_complexity Low_complexity 36 82 0 5 722 415 278 71 37 chr3 18036215 18036484 -141563299 + L1MA6 LINE L1 6022 6299 -1 5 722 323 316 132 0 chr3 18036489 18036625 -141563158 + MLT2C1 LTR ERVL 189 342 -55 4 722 267 289 24 12 chr3 18039552 18039636 -141560147 + GA-rich Low_complexity Low_complexity 1 85 0 5 722 477 255 0 9 chr3 18040330 18040437 -141559346 + B1_Mur1 SINE Alu 23 128 -21 5 722 354 45 0 0 chr3 18040446 18040490 -141559293 + (TTTG)n Simple_repeat Simple_repeat 2 45 0 5 722 276 315 101 14 chr3 18040986 18041134 -141558649 - MER5B DNA MER1_type -16 162 2 6 722 850 292 98 25 chr3 18041754 18042122 -141557661 + MER97c DNA MER1_type? 1 395 -695 6 722 223 222 12 12 chr3 18042158 18042240 -141557543 + CT-rich Low_complexity Low_complexity 5 86 0 6 722 396 40 0 0 chr3 18042248 18042298 -141557485 + (TG)n Simple_repeat Simple_repeat 1 50 0 6 722 3176 130 41 21 chr3 18042602 18043137 -141556646 + Lx LINE L1 6109 6654 0 6 722 337 272 176 19 chr3 18043162 18043424 -141556359 + MER97c DNA MER1_type? 511 813 -81 6 722 595 32 0 21 chr3 18043424 18043519 -141556264 - L1Md_F3 LINE L1 -22 6562 6470 6 722 300 266 25 12 chr3 18044408 18044488 -141555295 + L2c LINE L2 3307 3387 0 6 722 331 244 119 24 chr3 18045783 18045867 -141553916 - B3A SINE B2 -104 94 3 6 722 222 37 0 0 chr3 18047028 18047055 -141552728 + (TTCA)n Simple_repeat Simple_repeat 3 29 0 6 722 282 56 0 0 chr3 18047158 18047194 -141552589 + (TG)n Simple_repeat Simple_repeat 1 36 0 6 722 804 94 0 0 chr3 18047194 18047321 -141552462 + (GA)n Simple_repeat Simple_repeat 1 128 0 7 722 300 370 14 42 chr3 18047373 18047517 -141552266 - ID_B1 SINE B4 -81 143 4 7 722 222 37 0 0 chr3 18048425 18048452 -141551331 + (T)n Simple_repeat Simple_repeat 1 27 0 7 722 330 266 55 14 chr3 18049466 18049610 -141550173 + MIR SINE MIR 25 182 -86 7 722 363 283 34 1 chr3 18049860 18049973 -141549810 - B1F1 SINE Alu 0 117 1 7 722 929 259 91 28 chr3 18050124 18050588 -141549195 + L1MB7 LINE L1 5484 5976 -208 7 722 818 229 86 5 chr3 18051793 18051991 -141547792 - B3 SINE B2 -2 214 1 7 722 213 299 20 112 chr3 18052356 18052454 -141547329 + ID_B1 SINE B4 49 137 -87 7 722 285 325 0 0 chr3 18052501 18052581 -141547202 + ID4 SINE ID 2 81 -2 7 722 24 32 0 0 chr3 18052974 18053005 -141546778 + AT_rich Low_complexity Low_complexity 1 31 0 7 722 2126 83 86 0 chr3 18053905 18054206 -141545577 + ORR1A2 LTR MaLR 1 327 0 8 722 281 337 0 0 chr3 18055529 18055627 -141544156 + (CATATA)n Simple_repeat Simple_repeat 5 102 0 8 722 2595 172 72 8 chr3 18056536 18057063 -141542720 + RLTR31_Mm LTR ERVK 1 561 0 8 722 416 259 123 0 chr3 18057531 18057701 -141542082 + Charlie10 DNA MER1_type 2632 2822 0 8 722 467 264 84 21 chr3 18058150 18058293 -141541490 + LFSINE_Vert SINE SINE 224 375 -84 8 722 183 42 0 0 chr3 18058697 18058721 -141541062 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 8 722 201 275 96 63 chr3 18059136 18059278 -141540505 - MIRm SINE MIR -45 163 15 8 722 495 0 0 0 chr3 18060412 18060467 -141539316 + (GA)n Simple_repeat Simple_repeat 2 56 0 8 722 417 20 0 0 chr3 18060599 18060649 -141539134 + (TG)n Simple_repeat Simple_repeat 2 51 0 8 722 24 0 0 0 chr3 18060737 18060761 -141539022 + AT_rich Low_complexity Low_complexity 1 24 0 8 722 249 318 0 0 chr3 18062747 18062813 -141536970 + (CA)n Simple_repeat Simple_repeat 1 66 0 9 722 23 33 0 0 chr3 18064909 18064939 -141534844 + AT_rich Low_complexity Low_complexity 1 30 0 9 722 342 0 0 0 chr3 18067361 18067399 -141532384 + (TG)n Simple_repeat Simple_repeat 1 38 0 9 722 1004 83 6 0 chr3 18067399 18067555 -141532228 + (GA)n Simple_repeat Simple_repeat 1 158 0 9 722 254 164 0 18 chr3 18068124 18068180 -141531603 + (TA)n Simple_repeat Simple_repeat 2 56 0 9 722 806 56 0 0 chr3 18069990 18070098 -141529685 - B1_Mm SINE Alu 0 147 40 9 722 758 210 0 7 chr3 18070146 18070285 -141529498 + ORR1D1 LTR MaLR 3 140 -234 9 722 1607 148 231 3 chr3 18070291 18070624 -141529159 + MT2B LTR ERVL 193 601 0 9 722 6224 94 11 0 chr3 18070792 18071721 -141528062 - MusHAL1 LINE L1 -484 2228 1290 9 722 509 115 0 0 chr3 18071714 18071792 -141527991 + L1_Mus4 LINE L1 4419 4496 -1387 9 722 2618 34 0 0 chr3 18071792 18072112 -141527671 + MTA_Mm LTR MaLR 1 320 -76 1 722 3558 49 6 8 chr3 18072095 18072569 -141527214 + MTA_Mm-int LTR MaLR 626 1098 0 1 722 3495 23 0 0 chr3 18072569 18072965 -141526818 + MTA_Mm LTR MaLR 1 396 0 1 722 7486 130 38 3 chr3 18072965 18075026 -141524757 + L1_Mus4 LINE L1 4492 6634 -2 9 722 25 65 0 0 chr3 18075027 18075073 -141524710 + AT_rich Low_complexity Low_complexity 1 46 0 1 722 386 274 150 64 chr3 18075130 18075317 -141524466 - ORR1D2 LTR MaLR 0 370 168 1 722 677 177 48 0 chr3 18075326 18075473 -141524310 + Lx3C LINE L1 6818 6971 -5 1 722 476 182 27 0 chr3 18075488 18075598 -141524185 + GA-rich Low_complexity Low_complexity 3 115 0 1 722 1567 124 101 0 chr3 18075598 18075855 -141523928 + ORR1A3-int LTR MaLR 1029 1311 -652 1 722 640 322 0 32 chr3 18075890 18076076 -141523707 - ORR1D2 LTR MaLR -190 180 1 1 722 22 0 0 0 chr3 18076561 18076583 -141523200 + AT_rich Low_complexity Low_complexity 1 22 0 1 722 1134 296 54 95 chr3 18077205 18077461 -141522322 - RMER5 LTR ERV1 0 534 297 1 722 1411 37 0 0 chr3 18077461 18077625 -141522158 - U1 snRNA snRNA -1 164 1 1 722 1134 296 54 95 chr3 18077625 18077884 -141521899 - RMER5 LTR ERV1 -238 296 40 1 722 237 257 108 0 chr3 18078798 18078872 -141520911 + L2a LINE L2 3341 3422 -4 1 722 213 286 0 0 chr3 18078924 18078980 -141520803 + (CATA)n Simple_repeat Simple_repeat 1 56 0 1 722 444 321 131 28 chr3 18079606 18080003 -141519780 + L1MEc LINE L1 928 1365 -5035 1 722 243 314 56 61 chr3 18080221 18080401 -141519382 - MIR SINE MIR -75 187 9 1 722 649 246 52 77 chr3 18080434 18080628 -141519155 + B4 SINE B4 104 292 0 1 722 1178 277 166 29 chr3 18081488 18082108 -141517675 + MER44D DNA MER2_type 1 705 0 1 722 22 0 0 0 chr3 18082226 18082248 -141517535 + AT_rich Low_complexity Low_complexity 1 22 0 1 722 944 302 55 40 chr3 18082332 18082968 -141516815 - Lx7 LINE L1 -1603 6093 5414 1 722 509 316 25 0 chr3 18082990 18083148 -141516635 + B3A SINE B2 1 162 -36 1 722 494 318 34 11 chr3 18083214 18083392 -141516391 - B3A SINE B2 -16 182 1 1 722 5387 148 61 21 chr3 18083575 18084593 -141515190 + Lx2 LINE L1 5899 6957 -40 1 722 234 62 0 0 chr3 18085503 18085535 -141514248 + (A)n Simple_repeat Simple_repeat 1 32 0 1 722 22 56 0 0 chr3 18087608 18087644 -141512139 + AT_rich Low_complexity Low_complexity 1 36 0 1 722 708 200 229 0 chr3 18087645 18087820 -141511963 - B3 SINE B2 0 216 2 1 723 442 281 23 0 chr3 18088622 18088750 -141511033 + B1F SINE Alu 15 145 -4 1 723 221 0 35 0 chr3 18089803 18089832 -141509951 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 1 723 302 337 23 11 chr3 18090891 18090978 -141508805 - PB1D10 SINE Alu -20 97 10 1 723 426 183 35 0 chr3 18091165 18091334 -141508449 + CT-rich Low_complexity Low_complexity 3 177 0 1 723 188 185 19 0 chr3 18091346 18091400 -141508383 + CT-rich Low_complexity Low_complexity 3 57 0 1 723 528 225 86 18 chr3 18093173 18093336 -141506447 - Tigger7 DNA MER2_type -39 2452 2279 1 723 409 234 62 9 chr3 18093351 18093463 -141506320 - Tigger7 DNA MER2_type -2352 139 22 1 723 439 323 86 53 chr3 18093517 18093726 -141506057 - ID_B1 SINE B4 -7 217 2 1 723 26 0 0 0 chr3 18094252 18094278 -141505505 + AT_rich Low_complexity Low_complexity 1 26 0 1 723 2692 70 3 0 chr3 18095450 18095793 -141503990 - ORR1A1 LTR MaLR 0 346 3 1 723 252 120 0 0 chr3 18095968 18096018 -141503765 + (A)n Simple_repeat Simple_repeat 1 50 0 1 723 33571 89 13 7 chr3 18096021 18102310 -141497473 + L1Md_F2 LINE L1 207 6529 -53 1 723 603 202 97 11 chr3 18102356 18102541 -141497242 + L1MC LINE L1 4420 4620 -1526 1 723 637 275 7 21 chr3 18102973 18103118 -141496665 + B1_Mur3 SINE Alu 1 143 -6 1 723 419 52 0 17 chr3 18103121 18103180 -141496603 + (GGGA)n Simple_repeat Simple_repeat 4 61 0 1 723 860 272 8 16 chr3 18103181 18103439 -141496344 + L1_Mur3 LINE L1 2178 2433 -3447 1 723 628 226 93 58 chr3 18103627 18103918 -141495865 - Lx9 LINE L1 -34 7610 7310 1 723 198 190 93 81 chr3 18104032 18104118 -141495665 - L3b LINE CR1 -246 236 150 1 723 225 94 0 0 chr3 18104208 18104240 -141495543 + (TG)n Simple_repeat Simple_repeat 1 32 0 1 723 776 200 197 16 chr3 18110447 18110630 -141489153 + B3 SINE B2 1 216 0 1 723 241 318 60 98 chr3 18110840 18111157 -141488626 - L1M5 LINE L1 -218 5906 5602 1 723 384 22 0 0 chr3 18111968 18112013 -141487770 + (GA)n Simple_repeat Simple_repeat 1 45 0 1 723 273 29 0 0 chr3 18112013 18112046 -141487737 + (TG)n Simple_repeat Simple_repeat 2 35 0 1 723 748 229 93 31 chr3 18112359 18112553 -141487230 + B4A SINE B4 83 288 -4 1 723 314 320 116 104 chr3 18113278 18113613 -141486170 - MER58D DNA MER1_type -44 342 4 1 723 409 263 211 0 chr3 18115971 18116127 -141483656 + B4A SINE B4 91 279 -13 1 723 231 211 82 55 chr3 18116243 18116353 -141483430 + Lx7 LINE L1 7565 7677 -19 1 723 1745 57 0 13 chr3 18116372 18116603 -141483180 + L1Md_F2 LINE L1 6348 6575 -7 1 723 4526 85 5 10 chr3 18116823 18117451 -141482332 - L1_Mus3 LINE L1 -3 6635 6011 1 723 4315 100 38 0 chr3 18117451 18118305 -141481478 + L1_Mus3 LINE L1 5167 6043 -595 1 723 328 295 105 9 chr3 18118332 18118561 -141481222 + L1MA9 LINE L1 5959 6209 -103 1 723 659 306 16 42 chr3 18118603 18118642 -141481141 - B3 SINE B2 -17 199 167 1 723 621 40 0 0 chr3 18118642 18118718 -141481065 + (TG)n Simple_repeat Simple_repeat 1 76 0 1 723 659 306 16 42 chr3 18118718 18118869 -141480914 - B3 SINE B2 -50 166 14 1 723 3394 50 0 2 chr3 18119804 18120221 -141479562 - L1Md_F2 LINE L1 -3 6579 6164 1 723 245 98 0 47 chr3 18120275 18120339 -141479444 - L1Md_F3 LINE L1 0 6584 6524 1 723 2953 72 34 12 chr3 18120726 18121137 -141478646 - L1Md_F2 LINE L1 -12 6570 6151 1 723 186 208 0 0 chr3 18121381 18121429 -141478354 + T-rich Low_complexity Low_complexity 1 48 0 1 723 276 30 0 0 chr3 18121430 18121463 -141478320 + (TTG)n Simple_repeat Simple_repeat 1 33 0 1 723 846 153 7 59 chr3 18121519 18121672 -141478111 - B1_Mur4 SINE Alu 0 150 6 1 723 486 261 6 71 chr3 18121525 18121694 -141478089 - ID_B1 SINE B4 0 224 67 1 723 318 224 16 16 chr3 18122008 18122135 -141477648 + CT-rich Low_complexity Low_complexity 3 129 0 1 723 2672 83 44 5 chr3 18124016 18124401 -141475382 - MTB LTR MaLR 0 400 1 1 723 294 304 106 61 chr3 18124861 18125106 -141474677 + L2 LINE L2 1087 1342 -2077 1 723 1856 192 149 71 chr3 18125114 18125737 -141474046 - RMER6C LTR ERVK -16 674 3 1 723 322 342 27 0 chr3 18127115 18127226 -141472557 - PB1D10 SINE Alu 0 117 4 1 723 1054 51 0 21 chr3 18127469 18127610 -141472173 + B1_Mus1 SINE Alu 11 148 0 1 723 219 36 0 0 chr3 18127610 18127638 -141472145 + (A)n Simple_repeat Simple_repeat 1 28 0 1 723 235 311 45 54 chr3 18127896 18128008 -141471775 - L2a LINE L2 -39 3387 3277 1 723 759 73 0 8 chr3 18128239 18128363 -141471420 + L1_Mus4 LINE L1 6512 6634 -2 1 723 26 0 0 0 chr3 18128369 18128395 -141471388 + AT_rich Low_complexity Low_complexity 1 26 0 1 723 218 321 24 0 chr3 18130501 18130585 -141469198 + (TA)n Simple_repeat Simple_repeat 2 87 0 1 723 23 0 0 0 chr3 18131484 18131507 -141468276 + AT_rich Low_complexity Low_complexity 1 23 0 1 723 409 286 146 85 chr3 18131516 18131715 -141468068 - B4A SINE B4 0 292 82 1 723 820 145 30 8 chr3 18131710 18131842 -141467941 - B1_Mus2 SINE Alu -3 144 10 1 723 627 204 43 43 chr3 18131712 18131876 -141467907 - ID_B1 SINE B4 -4 220 57 1 723 875 112 0 14 chr3 18132696 18132841 -141466942 - L1Md_F2 LINE L1 -7 6575 6433 1 723 21 89 0 0 chr3 18133146 18133202 -141466581 + AT_rich Low_complexity Low_complexity 1 56 0 1 723 594 293 19 79 chr3 18133967 18134182 -141465601 - MLT1D LTR MaLR -52 453 252 1 723 545 318 87 41 chr3 18134425 18134479 -141465304 - B4A SINE B4 -4 288 231 1 723 918 207 36 234 chr3 18134479 18134945 -141464838 - ORR1D1 LTR MaLR 0 374 1 1 723 545 318 87 41 chr3 18134945 18135156 -141464627 - B4A SINE B4 -62 230 11 1 723 282 222 36 82 chr3 18135402 18135554 -141464229 + L1MA4 LINE L1 5785 5936 -361 1 723 1072 253 72 91 chr3 18135580 18136041 -141463742 - RLTR20D LTR ERVK 0 568 117 1 723 413 144 0 11 chr3 18136488 18136579 -141463204 + CT-rich Low_complexity Low_complexity 1 90 0 1 723 570 29 0 0 chr3 18136659 18136727 -141463056 + (GA)n Simple_repeat Simple_repeat 1 68 0 1 723 21 57 0 0 chr3 18136937 18136972 -141462811 + AT_rich Low_complexity Low_complexity 1 35 0 1 723 1061 234 9 5 chr3 18137286 18137501 -141462282 + B3 SINE B2 1 216 0 1 723 702 303 75 17 chr3 18137933 18138614 -141461169 + L1MC LINE L1 5089 5820 -524 1 723 227 130 0 0 chr3 18138858 18138904 -141460879 + B3 SINE B2 170 215 -1 1 723 597 94 0 0 chr3 18140281 18140366 -141459417 + (TTTC)n Simple_repeat Simple_repeat 4 88 0 1 723 879 192 0 0 chr3 18140389 18140566 -141459217 + CT-rich Low_complexity Low_complexity 2 178 0 1 723 774 169 0 111 chr3 18140607 18140760 -141459023 - B1_Mur4 SINE Alu -13 137 2 1 723 283 261 0 0 chr3 18140846 18140911 -141458872 + ID4_ SINE ID 3 67 -16 1 723 416 51 17 0 chr3 18141086 18141145 -141458638 + (TC)n Simple_repeat Simple_repeat 2 61 0 1 723 342 0 0 0 chr3 18141145 18141183 -141458600 + (CA)n Simple_repeat Simple_repeat 1 38 0 1 723 202 174 0 42 chr3 18141198 18141246 -141458537 + (CAGAGA)n Simple_repeat Simple_repeat 2 47 0 1 723 342 0 0 0 chr3 18141422 18141460 -141458323 + (TG)n Simple_repeat Simple_repeat 2 39 0 1 723 209 222 87 135 chr3 18142601 18142705 -141457078 - MIRc SINE MIR -55 213 115 1 723 208 254 14 29 chr3 18143343 18143412 -141456371 + (CCCCG)n Simple_repeat Simple_repeat 3 70 0 1 723 1007 184 281 22 chr3 18144296 18144655 -141455128 - RLTR24 LTR ERV1 -72 457 6 1 723 204 67 0 0 chr3 18144667 18144697 -141455086 + (A)n Simple_repeat Simple_repeat 1 30 0 2 723 1594 38 0 0 chr3 18144700 18144885 -141454898 + B2_Mm1t SINE B2 2 186 -7 2 723 21 0 0 0 chr3 18144887 18144908 -141454875 + AT_rich Low_complexity Low_complexity 1 21 0 2 723 1736 274 36 33 chr3 18145107 18146045 -141453738 + Lx6 LINE L1 6170 7401 -59 2 723 1607 196 80 39 chr3 18146999 18147387 -141452396 - MTD LTR MaLR -6 413 10 2 723 241 306 92 92 chr3 18147639 18147923 -141451860 - MLT2E LTR ERVL -96 533 220 2 723 1478 231 72 25 chr3 18147926 18148326 -141451457 + MTD LTR MaLR 1 419 0 2 723 1574 256 67 34 chr3 18148475 18149072 -141450711 - Charlie2b DNA MER1_type -19 2763 2147 2 723 1122 268 141 2 chr3 18149729 18150148 -141449635 - Lx8 LINE L1 -358 7115 6639 2 723 285 330 22 0 chr3 18151229 18151320 -141448463 - Helitron3Na_Mam RC Helitron -163 323 231 2 723 264 30 0 0 chr3 18151719 18151752 -141448031 + (TAGA)n Simple_repeat Simple_repeat 4 36 0 2 723 2038 152 70 3 chr3 18151808 18152177 -141447606 + ORR1B1 LTR MaLR 1 394 0 2 723 361 374 52 90 chr3 18152215 18152580 -141447203 - MLT1A0 LTR MaLR 0 365 15 2 723 288 111 0 0 chr3 18153339 18153393 -141446390 + (A)n Simple_repeat Simple_repeat 1 54 0 2 723 322 256 14 92 chr3 18153397 18153495 -141446288 + RMER15-int LTR ERVL 2320 2418 -2581 2 723 1086 149 39 6 chr3 18153495 18153677 -141446106 + B2_Mm2 SINE B2 1 188 -7 2 723 322 256 14 92 chr3 18153677 18153720 -141446063 + RMER15-int LTR ERVL 2419 2450 -2549 2 723 1223 61 0 0 chr3 18154022 18154169 -141445614 + B1_Mus2 SINE Alu 1 147 0 2 723 472 315 34 43 chr3 18154316 18154525 -141445258 + RMER15-int LTR ERVL 4451 4657 -342 2 723 289 308 0 11 chr3 18154798 18154890 -141444893 + Lx8 LINE L1 6963 7053 -420 2 723 361 313 39 25 chr3 18155844 18156036 -141443747 - B3 SINE B2 -2 196 2 2 723 228 155 102 17 chr3 18156060 18156119 -141443664 - L1_Mur2 LINE L1 -446 5431 5368 2 723 245 290 58 0 chr3 18156154 18156292 -141443491 - L1MD LINE L1 -755 5391 5246 2 723 195 42 0 0 chr3 18156292 18156316 -141443467 + (CA)n Simple_repeat Simple_repeat 1 24 0 2 723 414 0 0 0 chr3 18156316 18156361 -141443422 + (GA)n Simple_repeat Simple_repeat 2 47 0 2 723 2358 123 27 35 chr3 18156520 18156924 -141442859 - RLTR9E LTR ERVK 0 409 9 2 723 336 265 126 117 chr3 18157032 18157263 -141442520 - L1M2 LINE L1 -958 5185 4953 2 723 1231 295 39 6 chr3 18157791 18158146 -141441637 - ORR1D2 LTR MaLR -3 367 1 2 723 303 113 0 0 chr3 18158320 18158373 -141441410 + (GGA)n Simple_repeat Simple_repeat 3 55 0 2 723 885 68 0 0 chr3 18159049 18159166 -141440617 + (TC)n Simple_repeat Simple_repeat 1 117 0 2 723 1006 141 95 33 chr3 18159539 18159784 -141439999 - ORR1B2 LTR MaLR -85 274 3 2 723 336 217 58 0 chr3 18159823 18159892 -141439891 - Lx6 LINE L1 -1262 6198 6126 2 723 2231 138 55 3 chr3 18159895 18160258 -141439525 - ORR1B1 LTR MaLR -8 386 5 2 723 438 302 6 6 chr3 18160263 18160426 -141439357 - Lx6 LINE L1 -1330 6130 5968 2 723 3134 181 48 25 chr3 18160412 18160722 -141439061 - L1_Mur3 LINE L1 -1274 4606 4282 2 723 189 74 0 0 chr3 18160722 18160749 -141439034 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2 723 3134 181 48 25 chr3 18160749 18161202 -141438581 - L1_Mur3 LINE L1 -1599 4281 3826 2 723 2995 87 5 12 chr3 18161202 18161612 -141438171 + MTB_Mm LTR MaLR 1 407 0 2 723 4385 187 44 28 chr3 18161612 18162539 -141437244 + MTB_Mm-int LTR MaLR 3 1115 -255 2 723 6331 145 29 9 chr3 18162539 18163874 -141435909 - Lx LINE L1 -26 6628 5286 2 723 3309 117 31 26 chr3 18163874 18164416 -141435367 - Lx LINE L1 -3 6651 6107 2 723 6331 158 6 35 chr3 18164416 18165046 -141434737 - Lx LINE L1 -598 5285 4662 2 723 293 326 137 35 chr3 18165928 18166154 -141433629 + Ricksha_c DNA MuDR 415 663 -1385 2 723 29 28 0 0 chr3 18166422 18166458 -141433325 + AT_rich Low_complexity Low_complexity 1 36 0 2 723 993 293 178 48 chr3 18166779 18167047 -141432736 - L1MDa LINE L1 -4516 2041 1738 2 723 351 0 0 0 chr3 18167047 18167086 -141432697 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 2 723 250 286 196 53 chr3 18167086 18167679 -141432104 - L1MDa LINE L1 -4896 1737 1028 2 723 346 274 0 0 chr3 18168023 18168118 -141431665 - L1MDa LINE L1 -6235 398 304 2 723 1102 335 110 74 chr3 18168570 18169457 -141430326 + MTE-int LTR MaLR 58 1014 -566 2 723 1592 278 112 9 chr3 18169853 18170390 -141429393 + MTE-int LTR MaLR 933 1524 -56 2 723 848 267 25 5 chr3 18170905 18171101 -141428682 + B3 SINE B2 17 216 0 2 723 9376 78 1 21 chr3 18171123 18172454 -141427329 - L1_Mm LINE L1 -1457 4426 3123 2 723 265 83 0 0 chr3 18172450 18172486 -141427297 + L1_Mur2 LINE L1 4417 4452 -1425 2 723 4784 88 0 16 chr3 18172486 18173156 -141426627 + L1_Mus1 LINE L1 5909 6567 0 2 723 892 312 69 34 chr3 18173215 18174232 -141425551 - L1M2 LINE L1 -3465 3380 2322 2 723 612 249 111 30 chr3 18174232 18174431 -141425352 - B3 SINE B2 -1 215 1 2 723 428 301 98 58 chr3 18174431 18174456 -141425327 - L1M2 LINE L1 -4528 2321 2300 2 723 256 307 22 11 chr3 18174604 18174693 -141425090 + ORR1E LTR MaLR 1 90 -269 2 723 2561 317 40 4 chr3 18175204 18176044 -141423739 - Lx8 LINE L1 -318 7155 6285 2 723 30055 119 22 11 chr3 18176092 18182086 -141417697 + L1_Mus2 LINE L1 509 6566 0 2 723 35 41 0 0 chr3 18182088 18182137 -141417646 + AT_rich Low_complexity Low_complexity 1 49 0 2 723 444 329 63 52 chr3 18182281 18182644 -141417139 - Lx8 LINE L1 -1181 6292 5926 2 723 227 208 0 0 chr3 18182642 18182695 -141417088 + L1M LINE L1 5285 5337 -954 2 723 1391 244 43 66 chr3 18182717 18182905 -141416878 - Lx8 LINE L1 -626 5221 5040 2 723 1111 75 0 20 chr3 18182905 18183055 -141416728 - B1_Mus2 SINE Alu 0 147 1 2 723 1391 244 43 66 chr3 18183055 18183317 -141416466 - Lx8 LINE L1 -808 5039 4781 2 723 2340 106 73 43 chr3 18183317 18183712 -141416071 - MTB_Mm LTR MaLR 0 407 1 2 723 1391 244 43 66 chr3 18183712 18183790 -141415993 - Lx8 LINE L1 -1067 4780 4704 2 723 2130 250 18 38 chr3 18183794 18184459 -141415324 - Lx8 LINE L1 -1304 4543 3892 2 723 342 322 37 16 chr3 18184457 18184661 -141415122 - L1_Rod LINE L1 -6734 438 130 2 723 2120 289 150 37 chr3 18184705 18186636 -141413147 - Lx8 LINE L1 -2466 3414 1282 2 723 27 29 0 0 chr3 18187845 18187879 -141411904 + AT_rich Low_complexity Low_complexity 1 34 0 2 723 186 68 67 22 chr3 18187879 18187924 -141411859 + (TAGA)n Simple_repeat Simple_repeat 4 50 0 2 723 294 227 58 22 chr3 18188442 18188552 -141411231 + MLT1D LTR MaLR 427 502 -3 2 723 1113 246 26 30 chr3 18188711 18188979 -141410804 + RMER1C Other Other 740 1006 -336 2 723 3044 53 80 0 chr3 18188993 18189392 -141410391 - L1Md_F2 LINE L1 -12 6570 6140 2 723 4120 39 67 74 chr3 18189392 18190001 -141409782 + RLTR6_Mm LTR ERV1 1 605 -49 2 723 4324 39 2 1 chr3 18190001 18190728 -141409055 + MMVL30-int LTR ERV1 1 747 -2951 2 723 228 118 0 0 chr3 18190728 18190762 -141409021 + tRNA-Arg-AGG tRNA tRNA 43 76 0 2 723 869 111 322 21 chr3 18190762 18190942 -141408841 + MMVL30-int LTR ERV1 185 418 -7138 2 723 5994 66 10 15 chr3 18190983 18192419 -141407364 + MMVL30-int LTR ERV1 738 2013 -1685 2 723 19066 77 3 1 chr3 18192421 18195008 -141404775 - L1Md_F LINE L1 -572 5311 2720 2 723 6358 62 40 4 chr3 18195004 18195948 -141403835 - L1Md_F LINE L1 -4515 1368 392 2 723 2689 78 0 0 chr3 18196726 18197072 -141402711 + ORR1A0 LTR MaLR 1 346 0 2 723 252 0 0 0 chr3 18197445 18197473 -141402310 + (TG)n Simple_repeat Simple_repeat 2 29 0 2 723 1736 191 67 14 chr3 18198191 18198530 -141401253 + RMER1B Other Other 672 1033 -33 2 723 261 0 0 0 chr3 18198530 18198559 -141401224 + (CA)n Simple_repeat Simple_repeat 1 29 0 2 723 1736 191 67 14 chr3 18198559 18198580 -141401203 + RMER1B Other Other 1034 1051 -15 2 723 304 274 46 28 chr3 18198762 18198871 -141400912 - RLTR42-int LTR ERVK -4134 1388 1278 2 723 342 0 0 0 chr3 18200748 18200786 -141398997 + (TG)n Simple_repeat Simple_repeat 1 38 0 2 723 258 335 103 77 chr3 18200826 18201098 -141398685 - B4 SINE B4 -12 280 2 2 723 205 338 56 14 chr3 18201882 18201954 -141397829 + MIR SINE MIR 66 140 -122 2 723 5979 116 37 3 chr3 18203217 18204829 -141394954 + L1VL2 LINE L1 64 1730 -1885 2 723 7346 89 4 10 chr3 18204845 18206390 -141393393 - L1_Mus1 LINE L1 -3 6564 5028 2 723 4917 92 19 3 chr3 18206390 18207090 -141392693 + L1_Mus1 LINE L1 4332 5042 -841 2 723 15966 183 25 25 chr3 18207073 18207378 -141392405 + L1_Mur1 LINE L1 2002 2304 -3582 2 723 2360 57 91 3 chr3 18207378 18207696 -141392087 + ORR1A1 LTR MaLR 1 346 0 2 723 15966 183 25 25 chr3 18207696 18208166 -141391617 + L1_Mur1 LINE L1 2305 2793 -3093 2 723 195 42 0 0 chr3 18208166 18208190 -141391593 + (CAA)n Simple_repeat Simple_repeat 1 24 0 2 723 15966 183 25 25 chr3 18208190 18208693 -141391090 + L1_Mur1 LINE L1 2794 3305 -2581 2 723 1070 76 28 0 chr3 18208693 18208837 -141390946 + B1_Mus1 SINE Alu 1 148 0 2 723 15966 183 25 25 chr3 18208837 18209060 -141390723 + L1_Mur1 LINE L1 3306 3485 -2401 2 723 351 0 0 0 chr3 18209060 18209099 -141390684 + (TA)n Simple_repeat Simple_repeat 1 39 0 2 723 15966 183 25 25 chr3 18209099 18210939 -141388844 + L1_Mur1 LINE L1 3486 5345 -541 2 723 23 0 0 0 chr3 18210989 18211012 -141388771 + AT_rich Low_complexity Low_complexity 1 23 0 2 723 8692 85 7 1 chr3 18211082 18212994 -141386789 + L1_Mus2 LINE L1 4641 6565 -1 2 723 984 39 0 68 chr3 18213561 18213753 -141386030 + (CA)n Simple_repeat Simple_repeat 2 180 0 2 723 41 66 0 0 chr3 18214546 18214622 -141385161 + AT_rich Low_complexity Low_complexity 1 76 0 2 723 280 244 22 0 chr3 18214625 18214715 -141385068 - Lx9 LINE L1 -35 7609 7518 2 723 218 74 89 36 chr3 18214716 18214799 -141384984 + (TATAA)n Simple_repeat Simple_repeat 1 87 0 2 723 681 220 83 17 chr3 18214799 18214979 -141384804 - Lx9 LINE L1 -151 7493 7302 2 723 332 193 0 0 chr3 18214975 18215032 -141384751 + Lx9 LINE L1 6737 6793 -851 2 723 7072 133 24 3 chr3 18215125 18216278 -141383505 - L1_Mm LINE L1 -411 5472 4296 2 723 2548 151 162 37 chr3 18216268 18216804 -141382979 + L1_Mus2 LINE L1 5963 6565 -1 2 723 30 45 0 0 chr3 18216804 18216848 -141382935 + AT_rich Low_complexity Low_complexity 1 44 0 2 90 1976 127 41 13 chr3 18218906 18219224 -141380559 - ORR1A2 LTR MaLR 0 327 1 2 724 994 176 92 10 chr3 18219710 18219917 -141379866 - URR1B DNA MER1_type 0 225 2 2 724 570 305 121 8 chr3 18220142 18220406 -141379377 - MTE2a LTR MaLR -16 363 70 2 724 216 179 0 0 chr3 18220723 18220762 -141379021 + (TTTAG)n Simple_repeat Simple_repeat 3 41 0 2 724 1467 88 142 0 chr3 18220854 18221093 -141378690 - Lx3_Mus LINE L1 0 7009 6737 2 724 4863 147 110 33 chr3 18221094 18222702 -141377081 - L1_Mur1 LINE L1 -3946 1940 209 2 724 26 30 0 0 chr3 18222714 18222747 -141377036 + AT_rich Low_complexity Low_complexity 1 33 0 2 724 1053 211 30 89 chr3 18222976 18223346 -141376437 - L1_Mur3 LINE L1 -1144 4736 4389 2 724 332 320 0 48 chr3 18223358 18223463 -141376320 - MTEb-int LTR MaLR -518 1062 963 2 724 1089 335 104 20 chr3 18223439 18224037 -141375746 - MTEb-int LTR MaLR -806 774 127 2 724 1982 169 48 6 chr3 18224048 18224400 -141375383 - ORR1B1 LTR MaLR 0 394 28 2 724 888 193 0 0 chr3 18224400 18224545 -141375238 - Lx LINE L1 -451 6203 6059 2 724 1851 179 6 3 chr3 18224544 18224885 -141374898 + Lx LINE L1 6201 6542 -112 2 724 499 281 131 46 chr3 18224900 18225075 -141374708 - ID_B1 SINE B4 -34 190 1 3 724 357 297 208 18 chr3 18225120 18225496 -141374287 - Lx8 LINE L1 -32 7441 6994 3 724 356 96 0 0 chr3 18225534 18225586 -141374197 - ORR1B1 LTR MaLR -342 52 1 3 724 462 282 26 0 chr3 18225586 18225703 -141374080 - MTEb-int LTR MaLR -1460 120 1 2 724 534 205 43 53 chr3 18225704 18225888 -141373895 - MTEb LTR MaLR -14 405 242 2 724 1479 287 116 45 chr3 18226362 18226758 -141373025 - L1_Mur3 LINE L1 -1019 4861 4439 3 724 690 311 0 0 chr3 18226758 18226941 -141372842 + B3A SINE B2 1 183 -15 3 724 1479 287 116 45 chr3 18226941 18227575 -141372208 - L1_Mur3 LINE L1 -1442 4438 3757 3 724 26 30 0 0 chr3 18227689 18227722 -141372061 + AT_rich Low_complexity Low_complexity 1 33 0 3 724 21 57 0 0 chr3 18227944 18227979 -141371804 + AT_rich Low_complexity Low_complexity 1 35 0 3 724 1063 65 0 28 chr3 18228087 18228229 -141371554 + B1_Mm SINE Alu 1 138 -9 3 724 13605 92 15 14 chr3 18228473 18230642 -141369141 - L1VL2 LINE L1 -628 2987 819 3 724 1339 87 0 0 chr3 18230642 18230825 -141368958 - L1_Mus2 LINE L1 0 6566 6384 3 724 5653 122 3 94 chr3 18230825 18231632 -141368151 - L1VL2 LINE L1 -5517 818 94 3 724 469 99 19 19 chr3 18233743 18233846 -141365937 + (TCTCTG)n Simple_repeat Simple_repeat 4 106 0 3 724 830 316 92 18 chr3 18233855 18234127 -141365656 - B4A SINE B4 0 292 2 3 724 27 0 0 0 chr3 18234295 18234322 -141365461 + AT_rich Low_complexity Low_complexity 1 27 0 3 724 5379 258 83 3 chr3 18235060 18236485 -141363298 + Lx6 LINE L1 5913 7451 -9 3 724 285 146 0 0 chr3 18237561 18237609 -141362174 + (A)n Simple_repeat Simple_repeat 1 48 0 3 724 283 304 63 0 chr3 18237773 18237852 -141361931 + B3A SINE B2 87 170 -46 3 724 243 0 0 0 chr3 18237858 18237885 -141361898 + (CA)n Simple_repeat Simple_repeat 1 27 0 3 724 22 0 0 0 chr3 18238382 18238404 -141361379 + AT_rich Low_complexity Low_complexity 1 22 0 3 724 733 237 86 5 chr3 18238458 18238564 -141361219 + B3 SINE B2 15 122 -94 3 724 414 0 0 0 chr3 18238564 18238610 -141361173 + (CA)n Simple_repeat Simple_repeat 2 47 0 3 724 733 237 86 5 chr3 18238610 18238690 -141361093 + B3 SINE B2 123 215 -1 3 724 289 131 0 32 chr3 18240159 18240222 -141359561 + GA-rich Low_complexity Low_complexity 5 65 0 3 724 602 199 0 12 chr3 18242337 18242505 -141357278 + (CATA)n Simple_repeat Simple_repeat 4 169 0 3 724 183 222 0 0 chr3 18243356 18243392 -141356391 - MIR SINE MIR -220 42 7 3 724 590 304 68 6 chr3 18243922 18244084 -141355699 - B3A SINE B2 -16 182 11 3 724 311 247 0 99 chr3 18244131 18244212 -141355571 - B1_Mur1 SINE Alu -8 141 69 3 724 20209 117 17 3 chr3 18244218 18248178 -141351605 - L1_Mus3 LINE L1 0 6638 2620 3 724 34904 45 2 3 chr3 18248177 18253247 -141346536 + L1Md_T LINE L1 426 5589 -297 3 724 8506 28 1 0 chr3 18253247 18254242 -141345541 + L1Md_T LINE L1 5590 6585 0 3 724 6974 88 7 35 chr3 18254243 18255257 -141344526 + L1Md_F2 LINE L1 4601 5586 -297 3 724 7184 78 10 30 chr3 18255258 18256273 -141343510 + L1Md_F2 LINE L1 5588 6582 0 3 724 612 325 99 20 chr3 18256289 18256792 -141342991 - L1M2 LINE L1 -2221 3922 3357 3 724 483 182 37 29 chr3 18256820 18256956 -141342827 - L1Md_T LINE L1 -1 6581 6445 3 724 5477 57 13 31 chr3 18256956 18257728 -141342055 - RLTR13C2 LTR ERVK -14 888 1 3 724 560 72 0 0 chr3 18257728 18257797 -141341986 - L1_Mus1 LINE L1 -110 6457 6389 3 724 462 209 0 23 chr3 18257803 18257891 -141341892 + tRNA-Leu-TTA tRNA tRNA 1 86 0 3 724 379 322 67 31 chr3 18257926 18258530 -141341253 - L1_Mur3 LINE L1 -2522 3325 2715 3 724 249 224 0 0 chr3 18258531 18258580 -141341203 - B3 SINE B2 -166 50 2 3 724 21 0 0 0 chr3 18258960 18258981 -141340802 + AT_rich Low_complexity Low_complexity 1 21 0 3 724 1234 34 0 0 chr3 18259085 18259232 -141340551 + B1_Mus2 SINE Alu 1 147 0 3 724 186 43 0 0 chr3 18259235 18259258 -141340525 + (A)n Simple_repeat Simple_repeat 1 23 0 3 724 182 62 0 30 chr3 18259784 18259817 -141339966 + (TTGG)n Simple_repeat Simple_repeat 2 33 0 3 724 1132 50 0 7 chr3 18259817 18259957 -141339826 - B1_Mm SINE Alu -8 139 1 3 724 289 332 155 32 chr3 18260116 18260523 -141339260 - L1MEc LINE L1 -5895 505 49 3 724 220 362 40 7 chr3 18260692 18260842 -141338941 + L2a LINE L2 1403 1557 -1862 3 724 304 317 40 0 chr3 18261153 18261254 -141338529 + L2a LINE L2 2834 2938 -481 3 724 541 26 52 0 chr3 18261530 18261607 -141338176 + (TTTTA)n Simple_repeat Simple_repeat 2 82 0 3 724 244 322 65 16 chr3 18261610 18261733 -141338050 + L2a LINE L2 3296 3424 -2 3 724 21 0 0 0 chr3 18262141 18262162 -141337621 + AT_rich Low_complexity Low_complexity 1 21 0 3 724 330 26 0 0 chr3 18262531 18262570 -141337213 + (T)n Simple_repeat Simple_repeat 1 39 0 3 724 1258 20 0 0 chr3 18262570 18262717 -141337066 - B1_Mm SINE Alu 0 147 1 3 724 400 358 46 20 chr3 18263446 18263597 -141336186 - RSINE1 SINE B4 -5 160 6 3 724 581 76 0 11 chr3 18263597 18263690 -141336093 + (TCTA)n Simple_repeat Simple_repeat 4 95 0 3 724 1750 285 68 32 chr3 18263713 18264359 -141335424 - Lx8 LINE L1 0 7473 6805 3 724 775 197 7 7 chr3 18264390 18264538 -141335245 + B1_Mur4 SINE Alu 2 149 -1 3 724 248 371 0 0 chr3 18265211 18265273 -141334510 + tRNA-Ala-GCY_ tRNA tRNA 2 63 -12 3 724 420 138 0 0 chr3 18265343 18265408 -141334375 - Lx3B LINE L1 -1159 5814 5750 3 724 3183 237 40 10 chr3 18265408 18266291 -141333492 + Lx2B LINE L1 6051 6974 -2 3 724 931 126 35 0 chr3 18266920 18267063 -141332720 - B1_Mus1 SINE Alu 0 148 1 3 724 519 322 85 5 chr3 18267190 18267390 -141332393 + B4A SINE B4 1 216 -76 3 724 213 119 0 0 chr3 18267396 18267438 -141332345 + (T)n Simple_repeat Simple_repeat 1 42 0 3 724 7885 47 1 1 chr3 18267462 18268430 -141331353 - L1Md_F2 LINE L1 0 6582 5615 3 724 207 69 0 0 chr3 18270484 18270513 -141329270 + (TAAA)n Simple_repeat Simple_repeat 3 31 0 3 724 349 293 58 155 chr3 18271960 18272186 -141327597 + MLT2B2 LTR ERVL 4 207 -308 3 724 517 279 55 48 chr3 18272179 18272450 -141327333 + RLTR15 LTR ERVK 72 344 -15 3 724 180 0 0 0 chr3 18272463 18272483 -141327300 + (CAAAA)n Simple_repeat Simple_repeat 3 22 0 3 724 329 344 95 71 chr3 18272483 18272693 -141327090 + MLT2B1 LTR ERVL 130 344 -176 3 724 21 36 0 0 chr3 18272739 18272767 -141327016 + AT_rich Low_complexity Low_complexity 1 28 0 3 724 477 189 170 0 chr3 18272789 18272895 -141326888 - B3 SINE B2 -90 126 3 3 724 32 0 0 0 chr3 18272926 18272958 -141326825 + AT_rich Low_complexity Low_complexity 1 32 0 3 724 978 149 25 0 chr3 18273207 18273368 -141326415 - URR1B DNA MER1_type -2 223 59 3 724 292 194 4 12 chr3 18274210 18274272 -141325511 + LTR48B LTR ERV1 1 60 -727 3 724 263 299 102 10 chr3 18274675 18274773 -141325010 - PB1D10 SINE Alu -8 109 3 3 724 1095 83 14 0 chr3 18275247 18275392 -141324391 - B1_Mm SINE Alu 0 147 1 3 724 410 306 6 23 chr3 18275421 18275598 -141324185 + T-rich Low_complexity Low_complexity 2 175 0 3 724 225 24 47 23 chr3 18276106 18276149 -141323634 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 3 724 495 316 69 6 chr3 18276315 18276490 -141323293 + MLT1D LTR MaLR 310 495 -10 3 724 25 31 0 0 chr3 18277191 18277223 -141322560 + AT_rich Low_complexity Low_complexity 1 32 0 3 724 616 107 0 0 chr3 18277235 18277319 -141322464 - Lx9 LINE L1 -215 7429 7346 3 724 1115 71 7 0 chr3 18277791 18277932 -141321851 + B1_Mus1 SINE Alu 2 143 -5 3 724 207 0 0 0 chr3 18277937 18277960 -141321823 + (TAAAAA)n Simple_repeat Simple_repeat 2 24 0 3 724 342 89 0 0 chr3 18279484 18279529 -141320254 + B3 SINE B2 1 45 -171 3 724 281 234 99 36 chr3 18279603 18279714 -141320069 + L1M4 LINE L1 5065 5182 -964 3 724 9685 8 0 0 chr3 18279732 18280847 -141318936 - L1Md_A LINE L1 -1496 4387 3273 3 724 10767 5 0 0 chr3 18280830 18282036 -141317747 + L1Md_A LINE L1 4381 5586 -297 3 724 8670 17 1 0 chr3 18282036 18283031 -141316752 + L1Md_A LINE L1 5587 6582 0 3 724 23 68 0 0 chr3 18283243 18283287 -141316496 + AT_rich Low_complexity Low_complexity 1 44 0 3 724 1422 237 37 0 chr3 18283385 18283710 -141316073 - Lx6 LINE L1 -10 7450 7114 3 724 3691 178 77 4 chr3 18283715 18284517 -141315266 - L1_Mur3 LINE L1 -427 5453 4593 3 724 741 148 0 0 chr3 18284768 18284910 -141314873 + (TTCC)n Simple_repeat Simple_repeat 4 145 0 3 724 6869 113 4 48 chr3 18284941 18285457 -141314326 - L1_Mus4 LINE L1 -9 6627 6132 3 724 1170 62 0 0 chr3 18285457 18285601 -141314182 + B1_Mus1 SINE Alu 2 145 -3 3 724 8090 200 165 68 chr3 18285601 18289496 -141310287 - L1_Mus4 LINE L1 -505 6131 1829 3 724 38244 48 7 8 chr3 18289498 18295679 -141304104 - L1_Mus2 LINE L1 -3 6563 391 3 724 410 171 66 0 chr3 18295677 18295753 -141304030 + L1_Mur2 LINE L1 5300 5380 -497 3 724 2713 45 3 0 chr3 18295753 18296090 -141303693 + ORR1A0 LTR MaLR 1 338 -8 3 724 1912 112 30 20 chr3 18296092 18296393 -141303390 + L1_Mur2 LINE L1 5374 5677 -200 3 724 421 291 0 0 chr3 18296386 18296520 -141303263 - L1M2 LINE L1 -1448 4695 4562 3 724 502 328 28 34 chr3 18296565 18296742 -141303041 - B3 SINE B2 -23 193 18 3 724 633 306 163 13 chr3 18296807 18297354 -141302429 - L1M2 LINE L1 -1941 4202 3574 3 724 3380 189 74 4 chr3 18298431 18298964 -141300819 - L1_Mur2 LINE L1 -109 5768 5192 3 724 252 0 0 0 chr3 18298964 18298992 -141300791 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 3 724 3380 189 74 4 chr3 18298992 18299147 -141300636 - L1_Mur2 LINE L1 -686 5191 5033 3 724 414 0 0 0 chr3 18299505 18299551 -141300232 + (TA)n Simple_repeat Simple_repeat 2 47 0 3 724 918 205 125 0 chr3 18299551 18299751 -141300032 - URR1B DNA MER1_type 0 225 1 3 724 189 107 0 0 chr3 18299857 18299885 -141299898 + (CA)n Simple_repeat Simple_repeat 1 28 0 3 724 4177 246 101 26 chr3 18299885 18301368 -141298415 - Lx9 LINE L1 -179 7465 5762 3 724 1984 209 72 22 chr3 18301563 18302066 -141297717 + RLTR11A LTR ERVK 1 528 0 3 724 428 295 109 44 chr3 18302086 18302380 -141297403 + L1M2 LINE L1 3760 4072 -2071 3 724 487 277 31 6 chr3 18302820 18302980 -141296803 + L1M2 LINE L1 4774 4937 -1206 3 724 27 29 0 0 chr3 18303021 18303055 -141296728 + AT_rich Low_complexity Low_complexity 1 34 0 3 724 378 269 99 99 chr3 18303184 18303567 -141296216 + L1M4c LINE L1 1979 2361 -4023 3 724 615 254 156 25 chr3 18303729 18304089 -141295694 + L1M4c LINE L1 4507 4913 -1469 3 724 22 56 0 0 chr3 18304303 18304339 -141295444 + AT_rich Low_complexity Low_complexity 1 36 0 4 724 21 71 0 0 chr3 18304363 18304405 -141295378 + AT_rich Low_complexity Low_complexity 1 42 0 4 724 24307 128 21 42 chr3 18304421 18310872 -141288911 + L1_Mus1 LINE L1 98 5407 -476 4 724 288 0 0 0 chr3 18310872 18310904 -141288879 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 4 724 15479 82 16 15 chr3 18310904 18312754 -141287029 + L1_Mus1 LINE L1 4733 6567 0 4 724 863 281 54 11 chr3 18312832 18313135 -141286648 + Lx9 LINE L1 6889 7336 -308 4 724 7187 107 18 16 chr3 18313162 18314515 -141285268 + Lx LINE L1 5300 6654 0 4 724 237 269 164 5 chr3 18314510 18314730 -141285053 + Lx9 LINE L1 7351 7605 -39 4 724 24 67 0 0 chr3 18314834 18314879 -141284904 + AT_rich Low_complexity Low_complexity 1 45 0 4 724 24 0 0 0 chr3 18314964 18314988 -141284795 + AT_rich Low_complexity Low_complexity 1 24 0 4 724 372 368 38 45 chr3 18315347 18315637 -141284146 + B4A SINE B4 3 290 -2 4 724 21 0 0 0 chr3 18315831 18315852 -141283931 + AT_rich Low_complexity Low_complexity 1 21 0 4 724 657 272 140 42 chr3 18315852 18316237 -141283546 + L1M4 LINE L1 2389 2822 -3324 4 724 4106 133 76 3 chr3 18316237 18316924 -141282859 - RMER19A LTR ERVK 0 737 1 4 724 657 272 140 42 chr3 18316924 18317302 -141282481 + L1M4 LINE L1 2823 3227 -2919 4 724 671 238 0 8 chr3 18317302 18317433 -141282350 + B3 SINE B2 1 130 -86 4 724 265 154 13 23 chr3 18317478 18317556 -141282227 + L1M4 LINE L1 3207 3280 -2860 4 724 710 291 119 11 chr3 18318244 18318306 -141281477 + L1MA4 LINE L1 4714 4776 -1367 4 724 357 24 0 0 chr3 18318306 18318348 -141281435 + (CA)n Simple_repeat Simple_repeat 1 42 0 4 724 710 291 119 11 chr3 18318348 18318737 -141281046 + L1MA4 LINE L1 4777 5213 -930 4 724 380 325 17 0 chr3 18318854 18318971 -141280812 - MER44D DNA MER2_type -586 119 1 4 724 574 267 84 9 chr3 18319725 18319988 -141279795 + L1MA4 LINE L1 5628 5932 -359 4 724 247 260 39 59 chr3 18320212 18320314 -141279469 - RMER4B LTR ERVK -474 111 12 4 724 234 0 0 0 chr3 18321557 18321583 -141278200 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 4 724 220 127 17 68 chr3 18321664 18321723 -141278060 + T-rich Low_complexity Low_complexity 3 58 0 4 724 234 0 0 0 chr3 18322593 18322619 -141277164 + (T)n Simple_repeat Simple_repeat 1 26 0 4 724 1165 202 4 30 chr3 18322992 18323222 -141276561 - URR1B DNA MER1_type 0 225 2 4 724 593 306 104 48 chr3 18324598 18324828 -141274955 + B4A SINE B4 24 266 -26 4 724 333 47 0 0 chr3 18324837 18324880 -141274903 + (CA)n Simple_repeat Simple_repeat 1 43 0 4 724 23 97 0 0 chr3 18325220 18325292 -141274491 + AT_rich Low_complexity Low_complexity 1 72 0 4 724 1658 208 47 11 chr3 18326251 18326610 -141273173 + ORR1D1 LTR MaLR 3 374 0 4 724 222 426 44 7 chr3 18326967 18327104 -141272679 + B1F1 SINE Alu 1 142 -7 4 724 468 0 0 0 chr3 18329848 18329900 -141269883 + (TA)n Simple_repeat Simple_repeat 2 53 0 4 724 182 286 63 0 chr3 18329994 18330057 -141269726 + L2c LINE L2 3313 3379 -8 4 724 841 271 15 0 chr3 18330502 18330701 -141269082 + B3 SINE B2 5 206 -10 4 724 1161 132 21 16 chr3 18330715 18330907 -141268876 - B2_Mm2 SINE B2 -2 193 1 4 724 279 281 210 29 chr3 18330970 18331208 -141268575 - MER44A DNA MER2_type -27 312 32 4 724 33934 42 0 3 chr3 18331266 18336512 -141263271 + L1Md_T LINE L1 262 5589 -297 4 724 8388 37 0 0 chr3 18336512 18337508 -141262275 + L1Md_T LINE L1 5590 6585 0 4 724 690 154 20 0 chr3 18338313 18338462 -141261321 + GA-rich Low_complexity Low_complexity 2 153 0 4 724 22 56 0 0 chr3 18338616 18338652 -141261131 + AT_rich Low_complexity Low_complexity 1 36 0 4 724 5986 65 5 29 chr3 18339826 18340683 -141259100 + L1_Mus2 LINE L1 5730 6565 -1 4 724 372 237 79 63 chr3 18340920 18341002 -141258781 + PB1D9 SINE Alu 3 85 -65 4 724 357 43 0 0 chr3 18341002 18341049 -141258734 + (CAGAGA)n Simple_repeat Simple_repeat 2 48 0 4 724 372 237 79 63 chr3 18341049 18341092 -141258691 + PB1D9 SINE Alu 85 130 -20 4 724 660 137 0 0 chr3 18341092 18341231 -141258552 + (GA)n Simple_repeat Simple_repeat 2 140 0 4 724 30582 85 40 1 chr3 18342370 18348318 -141251465 - L1Md_F2 LINE L1 -13 6569 217 4 724 553 37 12 36 chr3 18348519 18348603 -141251180 - L1_Mus1 LINE L1 -1 6566 6485 4 724 2889 39 0 0 chr3 18348923 18349255 -141250528 - IAPEY3_LTR LTR ERVK 0 332 1 4 90 5643 108 1 0 chr3 18349351 18350213 -141249570 - L1_Mm LINE L1 -824 5059 4197 4 725 864 298 101 40 chr3 18351462 18351689 -141248094 + ORR1D2 LTR MaLR 1 244 -126 4 725 3807 28 5 0 chr3 18351689 18352123 -141247660 - RLTR10C LTR ERVK 0 436 1 4 725 864 298 101 40 chr3 18352123 18352241 -141247542 + ORR1D2 LTR MaLR 245 367 -3 4 725 982 262 16 35 chr3 18352245 18352502 -141247281 + ORR1D2-int LTR MaLR 2 253 -1117 4 725 235 342 186 18 chr3 18352533 18352866 -141246917 + L2a LINE L2 3035 3423 -3 4 725 759 186 7 14 chr3 18353061 18353208 -141246575 + B1_Mur2 SINE Alu 2 147 -2 4 725 207 0 0 0 chr3 18356762 18356785 -141242998 + (GTTTG)n Simple_repeat Simple_repeat 2 24 0 4 725 264 30 0 0 chr3 18357345 18357378 -141242405 + (TATAA)n Simple_repeat Simple_repeat 2 34 0 4 725 5450 203 60 26 chr3 18357387 18357552 -141242231 - Lx7 LINE L1 -184 7512 7362 4 725 375 41 0 0 chr3 18357552 18357601 -141242182 + (CA)n Simple_repeat Simple_repeat 2 50 0 4 725 5450 216 101 35 chr3 18357601 18358952 -141240831 - Lx7 LINE L1 -335 7361 5901 4 725 786 314 32 39 chr3 18359072 18359354 -141240429 + MER21B LTR ERV1 345 624 -239 4 725 440 313 104 33 chr3 18359355 18359680 -141240103 - MLT1A1 LTR MaLR -12 396 19 4 725 395 322 107 0 chr3 18359728 18359877 -141239906 + MER21B LTR ERV1 663 827 -36 4 725 349 353 152 28 chr3 18360191 18360474 -141239309 - MER90a LTR ERV1 -294 320 3 4 725 414 0 0 0 chr3 18361421 18361467 -141238316 + (TA)n Simple_repeat Simple_repeat 2 47 0 4 725 566 283 6 32 chr3 18362825 18362982 -141236801 - B4A SINE B4 0 292 140 4 725 1733 55 0 9 chr3 18364008 18364230 -141235553 + L1_Mus1 LINE L1 6347 6566 -1 4 725 364 308 56 19 chr3 18364396 18364558 -141235225 + L1MC4a LINE L1 6449 6616 -1266 4 725 401 0 20 0 chr3 18364560 18364609 -141235174 + (TAGA)n Simple_repeat Simple_repeat 1 50 0 4 725 219 36 0 0 chr3 18364708 18364736 -141235047 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 4 725 387 0 0 0 chr3 18364767 18364810 -141234973 + (CA)n Simple_repeat Simple_repeat 2 44 0 4 725 462 18 0 0 chr3 18365295 18365350 -141234433 + (TG)n Simple_repeat Simple_repeat 2 56 0 4 725 1263 289 77 17 chr3 18366154 18366632 -141233151 + Lx8 LINE L1 6225 6731 -742 4 725 2837 196 21 12 chr3 18366658 18367216 -141232567 + RLTR20B1 LTR ERVK 1 563 0 4 725 1100 308 77 33 chr3 18367217 18367900 -141231883 + Lx8 LINE L1 6742 7473 0 4 725 21 36 0 0 chr3 18368546 18368574 -141231209 + AT_rich Low_complexity Low_complexity 1 28 0 4 725 544 239 35 21 chr3 18369993 18370138 -141229645 + B1_Mur1 SINE Alu 1 147 -2 4 725 3368 165 63 24 chr3 18371489 18372155 -141227628 + RLTR17 LTR ERVK 1 692 0 4 725 248 290 101 25 chr3 18373486 18373645 -141226138 + Lx8 LINE L1 7295 7465 -8 4 725 366 267 7 15 chr3 18373878 18374015 -141225768 + L1MA5A LINE L1 5020 5155 -988 4 725 1637 229 65 16 chr3 18374170 18374556 -141225227 + MTD LTR MaLR 1 405 -14 4 725 1149 250 97 38 chr3 18374588 18375240 -141224543 + L1MA5A LINE L1 5188 5889 -408 4 725 2853 243 35 18 chr3 18375816 18376586 -141223197 + Lx7 LINE L1 6488 7270 -426 4 725 255 31 0 0 chr3 18376613 18376645 -141223138 + (ATTG)n Simple_repeat Simple_repeat 4 35 0 4 725 375 155 0 0 chr3 18376744 18376828 -141222955 + (TG)n Simple_repeat Simple_repeat 2 85 0 4 725 259 312 112 0 chr3 18376881 18377041 -141222742 + Lx7 LINE L1 7515 7692 -4 4 725 1239 103 0 0 chr3 18377069 18377243 -141222540 - L1_Mus2 LINE L1 -6 6560 6387 4 725 306 298 78 42 chr3 18378694 18378978 -141220805 + L1M2a LINE L1 1974 2288 -4880 4 725 242 293 48 12 chr3 18379746 18379829 -141219954 + MTE2a LTR MaLR 279 364 -15 4 725 26 0 0 0 chr3 18380068 18380094 -141219689 + AT_rich Low_complexity Low_complexity 1 26 0 4 725 235 343 104 9 chr3 18380598 18380704 -141219079 + L2a LINE L2 1258 1373 -2046 4 725 571 333 138 37 chr3 18380769 18381529 -141218254 + L2a LINE L2 1911 2747 -672 4 725 185 318 73 92 chr3 18381735 18381953 -141217830 + L2a LINE L2 3165 3378 -48 4 725 1174 82 0 0 chr3 18382419 18382566 -141217217 + B1_Mus1 SINE Alu 1 147 -1 4 725 180 0 0 0 chr3 18382570 18382590 -141217193 + (GAAAA)n Simple_repeat Simple_repeat 1 20 0 4 725 207 0 0 0 chr3 18382676 18382699 -141217084 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 4 725 278 228 99 0 chr3 18383195 18383296 -141216487 - L1M3 LINE L1 -1588 4552 4442 4 725 1516 219 47 42 chr3 18383380 18383694 -141216089 - Lx7 LINE L1 -203 7493 7181 4 725 1641 159 30 100 chr3 18383694 18384135 -141215648 - RMER17C LTR ERVK 0 410 1 4 725 1516 219 47 42 chr3 18384135 18384268 -141215515 - Lx7 LINE L1 -516 7180 7044 4 725 632 56 0 11 chr3 18384600 18384690 -141215093 + (GA)n Simple_repeat Simple_repeat 2 90 0 4 725 1066 278 65 42 chr3 18384829 18385381 -141214402 + L1M3 LINE L1 4704 5268 -872 4 725 876 128 43 0 chr3 18385379 18385543 -141214240 - L1_Mur2 LINE L1 -3628 2249 2079 4 725 270 0 0 0 chr3 18385563 18385593 -141214190 + (TG)n Simple_repeat Simple_repeat 1 30 0 4 725 2120 237 44 30 chr3 18385599 18386173 -141213610 + Lx5 LINE L1 6466 7047 -3 4 725 729 110 0 23 chr3 18386554 18386684 -141213099 + (GGGA)n Simple_repeat Simple_repeat 4 130 0 4 725 245 221 26 13 chr3 18386686 18386764 -141213019 + GA-rich Low_complexity Low_complexity 1 79 0 4 725 273 233 105 50 chr3 18387485 18387666 -141212117 + MER53 DNA hAT 1 191 -2 4 725 261 0 0 0 chr3 18389168 18389197 -141210586 + (CA)n Simple_repeat Simple_repeat 1 29 0 4 725 314 295 0 21 chr3 18389683 18389780 -141210003 - PB1D10 SINE Alu -8 109 15 4 725 28 0 0 0 chr3 18390135 18390163 -141209620 + AT_rich Low_complexity Low_complexity 1 28 0 4 725 624 332 101 50 chr3 18390232 18390677 -141209106 + L1M4 LINE L1 53 526 -6016 4 725 1347 72 0 0 chr3 18390677 18390857 -141208926 + (CA)n Simple_repeat Simple_repeat 1 180 0 4 725 624 332 101 50 chr3 18390857 18391245 -141208538 + L1M4 LINE L1 527 928 -5614 4 725 339 289 51 22 chr3 18391339 18391477 -141208306 + L1M4 LINE L1 3685 3826 -2818 4 725 24 53 0 0 chr3 18391496 18391534 -141208249 + AT_rich Low_complexity Low_complexity 1 38 0 4 725 265 253 129 7 chr3 18391728 18391875 -141207908 + L1M4 LINE L1 4156 4320 -2324 4 725 640 304 120 38 chr3 18392113 18392506 -141207277 - Arthur1B DNA Tip100 -206 1019 595 4 725 21 0 0 0 chr3 18392951 18392972 -141206811 + AT_rich Low_complexity Low_complexity 1 21 0 4 725 35 54 0 0 chr3 18395285 18395341 -141204442 + AT_rich Low_complexity Low_complexity 1 56 0 4 725 267 185 40 122 chr3 18396821 18396895 -141202888 + MER5A DNA MER1_type 1 68 -121 5 725 1404 35 0 0 chr3 18396903 18397073 -141202710 + (TTCTCC)n Simple_repeat Simple_repeat 6 175 0 5 725 952 159 84 11 chr3 18397105 18397283 -141202500 - Lx4A LINE L1 -2 7056 6866 5 725 2865 254 53 34 chr3 18397285 18398292 -141201491 - RMER1B Other Other -113 953 65 5 725 372 271 120 40 chr3 18398616 18398766 -141201017 + MTD LTR MaLR 1 162 -257 5 725 603 237 42 37 chr3 18398766 18398981 -141200802 - RLTR12A LTR ERVK 0 568 353 5 725 1204 149 42 9 chr3 18398992 18399208 -141200575 - RLTR12A LTR ERVK -345 223 1 5 725 855 230 164 19 chr3 18399211 18399424 -141200359 + MTD LTR MaLR 161 404 -15 5 725 1748 252 125 63 chr3 18399438 18400508 -141199275 + MTD-int LTR MaLR 6 1258 0 5 725 1309 300 37 8 chr3 18400508 18400915 -141198868 + MTD LTR MaLR 1 405 -14 5 725 334 260 9 63 chr3 18401084 18401195 -141198588 + ORR1D2 LTR MaLR 192 296 -74 5 725 845 241 25 10 chr3 18401453 18401654 -141198129 - MTEb LTR MaLR -2 377 174 5 725 498 318 33 33 chr3 18401698 18401939 -141197844 - RLTR15 LTR ERVK -71 288 48 5 725 2796 248 14 22 chr3 18402010 18402756 -141197027 - MYSERV-int LTR ERVK -303 6247 5523 5 725 25100 133 24 55 chr3 18402758 18409234 -141190549 + L1_Mus3 LINE L1 361 6638 0 5 725 671 194 68 44 chr3 18409252 18409306 -141190477 - MYSERV-int LTR ERVK -1040 5510 5449 5 725 432 0 0 0 chr3 18409306 18409354 -141190429 + (GA)n Simple_repeat Simple_repeat 2 49 0 5 725 671 194 68 44 chr3 18409354 18409449 -141190334 - MYSERV-int LTR ERVK -1102 5448 5358 5 725 2300 105 49 40 chr3 18409449 18409854 -141189929 + RLTR9E LTR ERVK 1 409 0 5 725 671 194 68 44 chr3 18409854 18409908 -141189875 - MYSERV-int LTR ERVK -1193 5357 5301 5 725 414 256 152 24 chr3 18409908 18410072 -141189711 - RMER4A LTR ERVK -27 439 255 5 725 1429 264 30 15 chr3 18410073 18410451 -141189332 - MYSERV-int LTR ERVK -403 5377 4749 5 725 1066 37 0 0 chr3 18410457 18410592 -141189191 - B1_Mus1 SINE Alu 0 148 14 5 725 1701 244 52 32 chr3 18410781 18411507 -141188276 - MYSERV6-int LTR ERVK -223 2954 1736 5 725 256 307 81 62 chr3 18411508 18411668 -141188115 - RLTR15 LTR ERVK -154 205 43 5 725 614 276 84 54 chr3 18411744 18411947 -141187836 - MTEb LTR MaLR -170 209 1 5 725 391 317 64 41 chr3 18412140 18412311 -141187472 + LTR86C LTR ERVL 136 310 -311 5 725 745 188 29 0 chr3 18412376 18412514 -141187269 - MTD LTR MaLR -266 153 12 5 725 614 148 78 0 chr3 18412935 18413063 -141186720 + Lx2 LINE L1 6860 6997 0 5 725 336 210 0 0 chr3 18413196 18413258 -141186525 + MTEb LTR MaLR 5 66 -313 5 725 988 283 38 48 chr3 18413260 18413553 -141186230 + MTEb LTR MaLR 35 324 -55 5 725 540 279 12 36 chr3 18413921 18414088 -141185695 + RSINE1 SINE B4 3 165 0 5 725 2962 164 38 33 chr3 18414318 18414892 -141184891 - Lx2B LINE L1 -2 6974 6398 5 725 5817 171 51 4 chr3 18414886 18416289 -141183494 - Lx2B LINE L1 -706 6294 4802 5 725 1324 118 0 14 chr3 18416281 18416496 -141183287 - Lx2B LINE L1 -3167 2719 2508 5 725 7902 57 5 1 chr3 18416498 18417475 -141182308 + L1_Mus1 LINE L1 5587 6567 0 5 725 973 87 13 7 chr3 18417503 18417653 -141182130 + (GAAA)n Simple_repeat Simple_repeat 2 152 0 5 725 6585 177 17 17 chr3 18417653 18419302 -141180481 - Lx2B LINE L1 -3367 2519 866 5 725 1289 232 56 36 chr3 18420101 18420512 -141179271 + L1_Mur3 LINE L1 885 1305 -6423 5 725 207 0 0 0 chr3 18420512 18420535 -141179248 + (CA)n Simple_repeat Simple_repeat 2 24 0 5 725 1289 216 46 39 chr3 18420535 18420931 -141178852 + L1_Mur3 LINE L1 1306 1632 -4248 5 725 904 219 87 17 chr3 18420933 18421174 -141178609 + L1_Mur3 LINE L1 4287 4544 -1336 5 725 1301 253 24 122 chr3 18421155 18421516 -141178267 + Lx7 LINE L1 6448 6784 -912 5 725 1116 63 28 0 chr3 18421516 18421659 -141178124 + B1_Mus2 SINE Alu 1 147 0 5 725 1301 262 249 41 chr3 18421659 18421974 -141177809 + Lx7 LINE L1 6785 7154 -542 5 725 460 59 162 0 chr3 18422047 18422115 -141177668 - L1_Mus3 LINE L1 -542 6096 6018 5 725 384 22 0 0 chr3 18422414 18422459 -141177324 + (TATG)n Simple_repeat Simple_repeat 3 47 0 5 725 451 329 91 59 chr3 18423430 18423737 -141176046 + ORR1E LTR MaLR 7 323 -36 5 725 387 0 0 0 chr3 18425175 18425218 -141174565 + (CA)n Simple_repeat Simple_repeat 2 44 0 5 725 572 306 19 13 chr3 18425488 18425647 -141174136 - RSINE1 SINE B4 -2 163 4 5 725 21 0 0 0 chr3 18426212 18426233 -141173550 + AT_rich Low_complexity Low_complexity 1 21 0 5 725 372 43 0 0 chr3 18427718 18427764 -141172019 + (TA)n Simple_repeat Simple_repeat 2 47 0 5 725 35 24 0 0 chr3 18427920 18427962 -141171821 + AT_rich Low_complexity Low_complexity 1 42 0 5 725 374 286 47 23 chr3 18429212 18429341 -141170442 + MLT1A1 LTR MaLR 277 408 0 5 725 778 174 0 14 chr3 18430326 18430472 -141169311 - Lx7 LINE L1 -2 7694 7551 5 725 498 33 0 0 chr3 18430478 18430538 -141169245 + (TA)n Simple_repeat Simple_repeat 1 60 0 5 725 662 48 19 0 chr3 18430552 18430655 -141169128 - L1Md_F2 LINE L1 -3 6579 6475 5 725 363 23 0 0 chr3 18430687 18430731 -141169052 + (TA)n Simple_repeat Simple_repeat 1 44 0 5 725 636 182 18 72 chr3 18430739 18430905 -141168878 - Lx7 LINE L1 -185 7511 7355 5 725 256 196 0 19 chr3 18430967 18431019 -141168764 - Lx7 LINE L1 -346 7350 7300 5 725 456 297 162 6 chr3 18431019 18431249 -141168534 - Lx5 LINE L1 -600 6860 6442 5 725 4248 169 63 7 chr3 18431318 18432170 -141167613 - L1_Mur3 LINE L1 -88 5792 4893 5 725 1033 116 0 13 chr3 18432330 18432479 -141167304 + B1_Mus2 SINE Alu 1 147 0 5 725 233 89 0 22 chr3 18432479 18432525 -141167258 + (CAAAA)n Simple_repeat Simple_repeat 4 48 0 5 725 1544 221 114 6 chr3 18432551 18433134 -141166649 + L1_Mur3 LINE L1 1898 2594 -3286 5 725 277 24 48 0 chr3 18434691 18434733 -141165050 + (TTTG)n Simple_repeat Simple_repeat 3 46 0 5 725 3396 30 5 0 chr3 18434780 18435174 -141164609 - MTA_Mm LTR MaLR 0 396 1 5 725 374 298 197 27 chr3 18436180 18436515 -141163268 + L1MDa LINE L1 940 1331 -5302 5 725 1171 299 45 8 chr3 18436524 18436881 -141162902 - ORR1D2 LTR MaLR 0 370 1 5 725 219 108 0 0 chr3 18436895 18436910 -141162873 + (CAA)n Simple_repeat Simple_repeat 2 16 0 5 725 306 0 0 0 chr3 18436910 18436944 -141162839 + (CCA)n Simple_repeat Simple_repeat 1 34 0 5 725 219 108 0 0 chr3 18436944 18436965 -141162818 + (CAA)n Simple_repeat Simple_repeat 2 22 0 5 725 394 259 177 6 chr3 18437230 18437241 -141162542 + L1MDa LINE L1 1658 1673 -4960 5 725 225 0 0 0 chr3 18437241 18437266 -141162517 + (CA)n Simple_repeat Simple_repeat 2 26 0 5 725 394 259 177 6 chr3 18437266 18437565 -141162218 + L1MDa LINE L1 1674 2021 -4612 5 725 2320 219 106 41 chr3 18437575 18438140 -141161643 - RMER20B LTR ERVK -25 602 1 5 725 755 281 146 62 chr3 18438309 18438711 -141161072 + L1MDa LINE L1 4060 4499 -2038 5 725 681 47 0 0 chr3 18438711 18438796 -141160987 + (TC)n Simple_repeat Simple_repeat 2 86 0 5 725 755 281 146 62 chr3 18438796 18439262 -141160521 + L1MDa LINE L1 4500 5001 -1536 5 725 306 315 8 77 chr3 18439549 18439666 -141160117 - RSINE1 SINE B4 -2 163 55 5 725 1101 280 36 22 chr3 18439687 18440052 -141159731 - ORR1D2 LTR MaLR 0 370 1 5 725 298 331 72 20 chr3 18440211 18440543 -141159240 + L1MDa LINE L1 5806 6160 -590 5 725 7137 115 34 2 chr3 18440734 18442409 -141157374 - L1_Mus3 LINE L1 -1 6637 4926 5 725 1050 69 0 20 chr3 18442396 18442543 -141157240 + L1_Mm LINE L1 4449 4592 -1291 5 725 366 206 29 0 chr3 18442545 18442613 -141157170 + RSINE1 SINE B4 58 127 -38 5 725 3112 153 48 11 chr3 18442613 18443135 -141156648 + RLTR20A LTR ERVK 1 541 0 5 725 2660 184 115 2 chr3 18443447 18443746 -141156037 - RMER6C LTR ERVK 0 690 375 5 725 660 59 0 0 chr3 18443746 18443831 -141155952 + (TC)n Simple_repeat Simple_repeat 2 86 0 5 725 2660 184 115 2 chr3 18443831 18444131 -141155652 - RMER6C LTR ERVK -316 374 23 5 725 1099 137 53 14 chr3 18444098 18444306 -141155477 - RMER6C LTR ERVK -473 217 2 5 725 450 0 0 0 chr3 18444359 18444409 -141155374 + (TG)n Simple_repeat Simple_repeat 2 51 0 5 725 1151 112 0 6 chr3 18444645 18444825 -141154958 + (GAA)n Simple_repeat Simple_repeat 1 179 0 5 725 16550 88 24 26 chr3 18446408 18447880 -141151903 - L1VL4 LINE L1 -4 3555 2046 5 725 1620 62 0 86 chr3 18447880 18448125 -141151658 + L1_Mus2 LINE L1 6342 6565 -1 5 725 16550 85 20 21 chr3 18448125 18449460 -141150323 - L1VL4 LINE L1 -1514 2045 753 5 725 39368 6 0 0 chr3 18449460 18456042 -141143741 - L1Md_A LINE L1 0 6582 1 5 725 5562 50 1 16 chr3 18456031 18457079 -141142704 - L1Md_A LINE L1 -5972 752 1 5 725 3441 130 19 3 chr3 18457077 18457649 -141142134 - L1VL4 LINE L1 -5535 767 187 5 725 2924 49 0 0 chr3 18458248 18458594 -141141189 + ORR1A0 LTR MaLR 1 346 0 5 725 585 42 0 0 chr3 18458662 18458734 -141141049 + (TG)n Simple_repeat Simple_repeat 2 73 0 5 725 202 118 29 0 chr3 18458965 18458999 -141140784 + (CAAAT)n Simple_repeat Simple_repeat 2 36 0 5 725 3103 231 28 14 chr3 18459144 18460188 -141139595 + RMER1A Other Other 9 875 -155 5 725 450 53 0 0 chr3 18460191 18460248 -141139535 + (CTTG)n Simple_repeat Simple_repeat 4 60 0 5 725 2221 206 30 94 chr3 18460266 18460840 -141138943 + RMER19C LTR ERVK 75 611 0 5 725 348 333 65 45 chr3 18460931 18461212 -141138571 + L1MEg LINE L1 1752 2014 -4619 5 725 666 240 116 49 chr3 18461217 18461545 -141138238 + Lx9 LINE L1 7289 7638 -6 5 725 402 21 0 0 chr3 18461827 18461874 -141137909 + (TC)n Simple_repeat Simple_repeat 1 47 0 5 725 1135 237 70 8 chr3 18462040 18462372 -141137411 + Lx3C LINE L1 752 1103 -5881 5 725 243 88 0 0 chr3 18462372 18462406 -141137377 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 5 725 2326 156 521 47 chr3 18462406 18462584 -141137199 + Lx3C LINE L1 1104 1343 -4543 5 725 3758 42 20 0 chr3 18462584 18463042 -141136741 + L1Md_F3 LINE L1 6104 6570 -14 5 725 2326 138 168 56 chr3 18463042 18463503 -141136280 + Lx3C LINE L1 1344 1880 -4006 5 725 2555 62 0 26 chr3 18463507 18463854 -141135929 - ORR1A1 LTR MaLR -8 338 1 5 725 1097 174 0 9 chr3 18463856 18464082 -141135701 + Lx3C LINE L1 1878 2101 -3785 5 725 2134 146 48 0 chr3 18464080 18464492 -141135291 + Lx3C LINE L1 3508 3939 -1947 5 725 10196 141 48 10 chr3 18466153 18467835 -141131948 + Lx3C LINE L1 3928 5687 -199 5 725 4533 172 150 23 chr3 18467835 18468824 -141130959 + RLTR13D3 LTR ERVK 1 1114 0 5 725 10196 158 30 10 chr3 18468824 18470089 -141129694 + Lx3C LINE L1 5685 6973 -3 5 725 350 326 0 10 chr3 18470212 18470308 -141129475 + PB1D10 SINE Alu 1 95 -22 5 725 484 296 0 29 chr3 18470223 18470359 -141129424 + ID_B1 SINE B4 93 224 0 5 725 624 27 0 0 chr3 18470583 18470657 -141129126 + (TC)n Simple_repeat Simple_repeat 1 74 0 5 725 590 286 49 6 chr3 18470657 18470819 -141128964 + MTEa LTR MaLR 211 379 0 5 725 2429 252 39 25 chr3 18471097 18471808 -141127975 + Lx6 LINE L1 6084 6804 -656 5 725 368 300 114 0 chr3 18472038 18472178 -141127605 + L1MA4 LINE L1 4341 4496 -1647 5 725 1386 260 45 30 chr3 18472179 18472516 -141127267 - MTC LTR MaLR 0 421 80 5 725 685 29 29 0 chr3 18472593 18472697 -141127086 + L1Md_T LINE L1 6475 6581 -1 5 725 412 218 46 0 chr3 18473009 18473096 -141126687 - MTC LTR MaLR -330 91 1 5 725 1031 279 110 12 chr3 18473132 18473462 -141126321 + MTD LTR MaLR 18 405 -14 5 725 1392 169 40 14 chr3 18473476 18473753 -141126030 + RLTR31_Mm LTR ERVK 1 284 -277 5 725 502 204 41 0 chr3 18473740 18473838 -141125945 - RLTR31_Mm LTR ERVK -459 102 1 5 725 5394 172 56 40 chr3 18473839 18475119 -141124664 - RMER3D-int LTR ERVK -1 2841 1541 5 725 1450 267 68 41 chr3 18475147 18475349 -141124434 + L1MA4 LINE L1 4542 4740 -1403 5 725 451 250 71 9 chr3 18475349 18475462 -141124321 + PB1D7 SINE Alu 1 120 0 5 725 1450 280 87 34 chr3 18475462 18476565 -141123218 + L1MA4 LINE L1 4741 5917 -383 5 725 441 312 82 5 chr3 18476992 18477198 -141122585 - MER2 DNA MER2_type -7 338 117 5 725 1189 183 0 0 chr3 18477251 18477464 -141122319 - L1_Mur2 LINE L1 -648 5229 5017 5 725 5968 111 19 0 chr3 18477461 18478360 -141121423 + L1_Mus4 LINE L1 5717 6632 -4 6 725 24 32 0 0 chr3 18478365 18478396 -141121387 + AT_rich Low_complexity Low_complexity 1 31 0 6 725 562 300 40 0 chr3 18479956 18480106 -141119677 - RSINE1 SINE B4 -7 158 3 6 725 1987 158 22 3 chr3 18480277 18480645 -141119138 + Lx LINE L1 6279 6653 -1 6 725 237 200 0 0 chr3 18480651 18480691 -141119092 + LSU-rRNA_Hsa rRNA rRNA 1778 1817 -3218 6 90 2785 124 35 34 chr3 18480778 18481292 -141118491 + MMETn-int LTR ERVK 4309 4814 -30 6 726 188 0 74 0 chr3 18481292 18481319 -141118464 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 6 726 2785 124 35 34 chr3 18481319 18481339 -141118444 + MMETn-int LTR ERVK 4815 4843 -1 6 726 1905 116 6 59 chr3 18481339 18481679 -141118104 + RLTRETN_Mm LTR ERVK 1 322 0 6 726 455 222 24 49 chr3 18481818 18481941 -141117842 - Lx9 LINE L1 -329 7315 7196 6 726 5647 95 32 14 chr3 18482215 18483051 -141116732 - RLTR13D5 LTR ERVK 0 1023 173 6 726 2517 203 38 46 chr3 18483052 18483433 -141116350 + Lx9 LINE L1 6716 7089 -555 6 726 320 59 20 0 chr3 18483433 18483484 -141116299 + (CAAA)n Simple_repeat Simple_repeat 1 52 0 6 726 2517 203 38 46 chr3 18483484 18483728 -141116055 + Lx9 LINE L1 7090 7336 -308 6 726 923 188 50 0 chr3 18483745 18483926 -141115857 + URR1B DNA MER1_type 36 225 0 6 726 246 352 37 32 chr3 18483763 18483951 -141115832 - CYRA11_Mm Unknown Y-chromosome -280 337 149 6 726 613 193 155 57 chr3 18483951 18484102 -141115681 + Lx9 LINE L1 7354 7505 -139 6 726 1870 120 120 0 chr3 18484102 18484393 -141115390 + ORR1A2 LTR MaLR 2 327 0 6 726 613 193 155 57 chr3 18484393 18484505 -141115278 + Lx9 LINE L1 7506 7643 -1 6 726 25 65 0 0 chr3 18484537 18484583 -141115200 + AT_rich Low_complexity Low_complexity 1 46 0 6 726 34784 33 2 0 chr3 18484630 18489808 -141109975 + L1Md_T LINE L1 441 5586 -297 6 726 8511 29 1 0 chr3 18489809 18490803 -141108980 + L1Md_T LINE L1 5588 6582 0 6 726 464 302 0 41 chr3 18490817 18490962 -141108821 + B1_Mur1 SINE Alu 2 140 -9 6 726 27 0 0 0 chr3 18491404 18491431 -141108352 + AT_rich Low_complexity Low_complexity 1 27 0 6 726 351 75 0 0 chr3 18491453 18491506 -141108277 + L1Md_F3 LINE L1 6518 6570 -14 6 726 21 0 0 0 chr3 18491558 18491579 -141108204 + AT_rich Low_complexity Low_complexity 1 21 0 6 726 315 0 0 0 chr3 18492624 18492659 -141107124 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 6 726 770 139 0 32 chr3 18492659 18492785 -141106998 - B1_Mur4 SINE Alu -9 141 20 6 726 277 247 0 124 chr3 18492699 18492796 -141106987 - MT2B LTR ERVL -344 257 173 6 726 24 0 0 0 chr3 18492930 18492954 -141106829 + AT_rich Low_complexity Low_complexity 1 24 0 6 726 322 224 6 50 chr3 18492954 18493114 -141106669 + G-rich Low_complexity Low_complexity 4 156 0 6 726 1071 235 97 37 chr3 18494304 18494684 -141105099 - Lx8 LINE L1 0 7473 7071 6 726 460 261 37 56 chr3 18494996 18495046 -141104737 - CYRA11_Mm Unknown Y-chromosome -242 375 197 6 726 905 153 6 6 chr3 18495046 18495204 -141104579 + URR1A DNA MER1_type 69 226 0 6 726 420 260 87 0 chr3 18495211 18495338 -141104445 - RLTR40 LTR ERVK -218 599 462 6 726 823 193 60 88 chr3 18495789 18496039 -141103744 - RLTR40 LTR ERVK -574 243 1 6 726 222 116 0 0 chr3 18496183 18496226 -141103557 + (A)n Simple_repeat Simple_repeat 1 43 0 6 726 1690 127 124 0 chr3 18497081 18497372 -141102411 + IAPEY3_LTR LTR ERVK 1 327 -5 6 726 891 96 20 33 chr3 18497375 18497526 -141102257 + IAPEY3-int LTR ERVK 1 149 -7531 6 726 1052 114 22 82 chr3 18497524 18497854 -141101929 + IAPEY3-int LTR ERVK 538 952 -6629 6 726 1522 183 106 37 chr3 18497976 18498427 -141101356 + RMER16-int LTR ERVK 255 659 -4747 6 726 288 139 0 0 chr3 18498463 18498506 -141101277 + RLTR10-int LTR ERVK 950 992 -995 6 726 265 299 17 8 chr3 18498646 18498764 -141101019 + IAPEY3-int LTR ERVK 822 940 -5602 6 726 251 258 0 0 chr3 18498825 18498891 -141100892 + IAPEY3-int LTR ERVK 1499 1564 -6017 6 726 965 161 0 0 chr3 18498965 18499127 -141100656 + IAP-d-int LTR ERVK 5007 5168 -1374 6 726 1583 136 52 2 chr3 18499191 18499522 -141100261 + IAPEY3-int LTR ERVK 6965 7338 -342 6 726 1245 205 58 18 chr3 18499539 18499882 -141099901 + IAPEz-int LTR ERVK 6125 6481 0 6 726 667 136 127 0 chr3 18499882 18500000 -141099783 + IAPEY3_LTR LTR ERVK 1 133 -199 6 726 1026 121 121 0 chr3 18500000 18500173 -141099610 + IAPEY3_LTR LTR ERVK 134 327 -5 1 726 662 311 24 0 chr3 18500393 18500599 -141099184 + B3 SINE B2 1 211 -5 2 726 13169 95 11 7 chr3 18500884 18503682 -141096101 - L1_Mus1 LINE L1 -1 6566 3759 3 726 180 0 0 0 chr3 18504238 18504258 -141095525 + (GTTTG)n Simple_repeat Simple_repeat 5 24 0 4 726 207 0 0 0 chr3 18504258 18504281 -141095502 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 5 726 5630 80 12 11 chr3 18504283 18505115 -141094668 - Lx3_Mus LINE L1 -23 6986 6154 6 726 9090 76 34 5 chr3 18505150 18506481 -141093302 - L1_Mur1 LINE L1 0 5886 4517 7 726 346 305 257 30 chr3 18506989 18507428 -141092355 + L1MEg LINE L1 760 1298 -4786 8 726 1367 228 66 10 chr3 18507814 18508116 -141091667 + ORR1B1 LTR MaLR 76 394 0 9 726 312 102 0 0 chr3 18508224 18508273 -141091510 + (A)n Simple_repeat Simple_repeat 1 49 0 1 726 1183 177 158 0 chr3 18508390 18508656 -141091127 - RLTR24 LTR ERV1 -2 527 220 1 726 2660 126 60 24 chr3 18508656 18509121 -141090662 - RLTR45 LTR ERVK 0 482 1 1 726 6612 51 8 5 chr3 18509121 18509962 -141089821 - RLTR45-int LTR ERVK 0 7244 6401 1 726 243 302 35 106 chr3 18509962 18510103 -141089680 + LTR50 LTR ERVL 136 266 -529 1 726 470 299 0 13 chr3 18510103 18510262 -141089521 - RNERVK23-int LTR ERVK -673 7544 7388 1 726 2511 61 3 9 chr3 18510611 18510941 -141088842 - RLTR45-int LTR ERVK -5599 1645 1318 1 726 327 309 24 24 chr3 18511192 18511361 -141088422 - SRV_MM-int LTR ERVK -3623 2544 2376 1 726 693 120 8 0 chr3 18511809 18511926 -141087857 - RLTR45-int LTR ERVK -6214 1030 913 1 726 1606 87 0 0 chr3 18512056 18512275 -141087508 - RLTR45-int LTR ERVK -6334 910 692 1 726 4705 67 28 13 chr3 18512631 18513313 -141086470 - RLTR45-int LTR ERVK -6552 692 1 1 726 2538 135 30 79 chr3 18513313 18513820 -141085963 - RLTR45 LTR ERVK 0 482 1 1 726 1138 182 147 13 chr3 18513820 18514093 -141085690 - RLTR24 LTR ERV1 -235 294 1 1 726 325 349 39 23 chr3 18515092 18515221 -141084562 + MIRb SINE MIR 98 228 -40 1 726 419 268 235 18 chr3 18516302 18516519 -141083264 - RMER15 LTR ERVL -3 572 309 1 726 823 299 72 33 chr3 18516666 18517026 -141082757 - RMER15-int LTR ERVL -3 4996 4623 1 726 540 221 0 0 chr3 18517274 18517360 -141082423 + B1_Mur3 SINE Alu 1 86 -63 1 726 381 43 0 0 chr3 18517360 18517407 -141082376 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 726 405 0 0 0 chr3 18517407 18517451 -141082332 + (GA)n Simple_repeat Simple_repeat 2 46 0 2 726 3469 196 66 26 chr3 18517528 18518405 -141081378 + RMER13A LTR ERVK 5 892 -16 2 726 254 284 81 0 chr3 18518422 18518540 -141081243 - Lx7 LINE L1 -780 6693 6559 2 726 506 16 16 0 chr3 18518816 18518879 -141080904 + (GA)n Simple_repeat Simple_repeat 1 64 0 2 726 2191 301 64 34 chr3 18519547 18520522 -141079261 - RMER15-int LTR ERVL -3526 1473 470 1 726 2675 183 105 20 chr3 18520543 18521135 -141078648 + RLTR26 LTR ERVK 1 642 0 2 726 492 370 24 20 chr3 18521138 18521389 -141078394 - RMER15-int LTR ERVL -4553 446 195 1 726 560 337 68 30 chr3 18521437 18521703 -141078080 - RMER15 LTR ERVL -1 574 299 1 726 308 337 47 9 chr3 18522550 18522691 -141077092 + ORR1C1 LTR MaLR 31 179 -195 2 726 705 331 29 65 chr3 18523029 18523304 -141076479 + B4A SINE B4 1 265 -27 2 726 309 51 0 0 chr3 18523353 18523392 -141076391 + (CA)n Simple_repeat Simple_repeat 2 40 0 2 726 297 0 0 0 chr3 18523392 18523424 -141076359 + (GA)n Simple_repeat Simple_repeat 2 34 0 2 726 180 176 0 0 chr3 18525280 18525314 -141074469 + CT-rich Low_complexity Low_complexity 3 36 0 2 726 237 119 0 0 chr3 18527337 18527379 -141072404 + (CA)n Simple_repeat Simple_repeat 2 43 0 3 726 321 327 50 0 chr3 18527884 18527985 -141071798 + Tigger7 DNA MER2_type 56 161 -2330 3 726 263 264 117 88 chr3 18528056 18528193 -141071590 - B1F1 SINE Alu -1 148 8 3 726 615 286 43 0 chr3 18528249 18528410 -141071373 - Tigger7 DNA MER2_type -2168 323 156 3 726 232 275 61 24 chr3 18529748 18529830 -141069953 + MIR SINE MIR 107 191 -71 3 726 384 22 0 0 chr3 18530037 18530082 -141069701 + (CA)n Simple_repeat Simple_repeat 2 46 0 3 726 241 283 150 62 chr3 18530203 18530316 -141069467 + MIRm SINE MIR 63 185 -91 3 726 440 345 60 63 chr3 18530396 18530681 -141069102 + B4A SINE B4 9 292 0 3 726 203 128 51 0 chr3 18530684 18530723 -141069060 + (CAGA)n Simple_repeat Simple_repeat 4 44 0 3 726 23 54 0 0 chr3 18531537 18531574 -141068209 + AT_rich Low_complexity Low_complexity 1 37 0 3 726 22 35 0 0 chr3 18532417 18532446 -141067337 + AT_rich Low_complexity Low_complexity 1 29 0 4 726 1287 72 33 22 chr3 18532541 18532725 -141067058 + B2_Mm2 SINE B2 2 187 -8 4 726 259 63 46 31 chr3 18532925 18532990 -141066793 + (TTA)n Simple_repeat Simple_repeat 2 67 0 4 726 27 0 0 0 chr3 18534042 18534069 -141065714 + AT_rich Low_complexity Low_complexity 1 27 0 4 726 579 326 90 36 chr3 18534380 18534657 -141065126 - MER2 DNA MER2_type -27 318 27 4 726 7486 89 8 3 chr3 18535778 18537094 -141062689 + L1_Mus4 LINE L1 5301 6628 -8 4 726 337 55 18 35 chr3 18537094 18537151 -141062632 + (TAGA)n Simple_repeat Simple_repeat 4 59 0 4 726 21 71 0 0 chr3 18537225 18537267 -141062516 + AT_rich Low_complexity Low_complexity 1 42 0 4 726 225 338 0 0 chr3 18537882 18537953 -141061830 + MER33 DNA MER1_type 11 81 -243 4 726 288 0 0 0 chr3 18538022 18538054 -141061729 + (TA)n Simple_repeat Simple_repeat 2 33 0 4 726 216 0 0 0 chr3 18538850 18538874 -141060909 + (A)n Simple_repeat Simple_repeat 1 24 0 5 726 382 60 23 35 chr3 18542214 18542300 -141057483 + (CAAA)n Simple_repeat Simple_repeat 4 88 0 5 726 303 71 0 0 chr3 18542562 18542604 -141057179 + (TTG)n Simple_repeat Simple_repeat 2 43 0 5 726 256 335 194 6 chr3 18542927 18543107 -141056676 + MIR SINE MIR 41 254 -8 5 726 239 269 88 48 chr3 18544327 18544452 -141055331 + LTR48 LTR ERV1 1 130 -657 5 726 24 0 0 0 chr3 18544961 18544985 -141054798 + AT_rich Low_complexity Low_complexity 1 24 0 5 726 252 0 0 0 chr3 18545289 18545317 -141054466 + (CA)n Simple_repeat Simple_repeat 2 29 0 5 726 868 111 14 0 chr3 18547356 18547500 -141052283 + (TCC)n Simple_repeat Simple_repeat 3 148 0 5 726 241 302 80 86 chr3 18547684 18547847 -141051936 - MLT1J LTR MaLR -17 495 334 5 726 265 303 40 0 chr3 18548054 18548130 -141051653 - MER5A DNA MER1_type -75 114 36 5 726 293 326 190 61 chr3 18548910 18549237 -141050546 + MLT1E1A LTR MaLR 312 680 0 6 726 718 200 200 0 chr3 18549351 18549496 -141050287 - B3 SINE B2 -14 202 29 6 726 27 0 0 0 chr3 18549638 18549665 -141050118 + AT_rich Low_complexity Low_complexity 1 27 0 6 726 1366 76 16 5 chr3 18549838 18550023 -141049760 + B2_Mm2 SINE B2 2 188 -7 6 726 1075 64 0 0 chr3 18550026 18550166 -141049617 + B1_Mus2 SINE Alu 8 147 0 6 726 209 258 59 29 chr3 18550795 18550863 -141048920 + MIRc SINE MIR 79 148 -120 6 726 450 49 0 0 chr3 18551237 18551298 -141048485 + (TAGA)n Simple_repeat Simple_repeat 3 63 0 6 726 489 104 0 0 chr3 18551792 18551869 -141047914 + (CA)n Simple_repeat Simple_repeat 2 78 0 6 726 387 0 0 0 chr3 18553895 18553938 -141045845 + (TG)n Simple_repeat Simple_repeat 1 43 0 6 726 644 74 11 0 chr3 18554130 18554225 -141045558 + (TC)n Simple_repeat Simple_repeat 1 96 0 6 726 241 298 7 114 chr3 18554486 18554626 -141045157 - MER2 DNA MER2_type -124 221 97 7 726 896 320 7 19 chr3 18554714 18554985 -141044798 - MLT1D LTR MaLR 0 505 238 7 726 437 265 8 20 chr3 18554985 18555087 -141044696 + PB1D7 SINE Alu 5 113 -14 7 726 1092 131 0 0 chr3 18555090 18555265 -141044518 + (GAA)n Simple_repeat Simple_repeat 2 176 0 7 726 473 32 0 16 chr3 18555266 18555330 -141044453 + (GGA)n Simple_repeat Simple_repeat 1 63 0 7 726 236 0 67 22 chr3 18556048 18556093 -141043690 + (TG)n Simple_repeat Simple_repeat 2 48 0 7 726 319 178 33 0 chr3 18556104 18556194 -141043589 + GA-rich Low_complexity Low_complexity 1 93 0 7 726 833 272 100 62 chr3 18556223 18556513 -141043270 - MTEa LTR MaLR -78 301 1 7 726 24 0 0 0 chr3 18556841 18556865 -141042918 + AT_rich Low_complexity Low_complexity 1 24 0 7 726 683 279 165 54 chr3 18557262 18557550 -141042233 - MLT1C LTR MaLR -16 451 117 7 726 2725 144 112 52 chr3 18557550 18557729 -141042054 + RMER15 LTR ERVL 1 168 -407 8 726 443 18 0 18 chr3 18557729 18557786 -141041997 + (CAAAA)n Simple_repeat Simple_repeat 3 58 0 8 726 2725 144 112 52 chr3 18557786 18558148 -141041635 + RMER15 LTR ERVL 169 575 0 8 726 683 279 165 54 chr3 18558148 18558265 -141041518 - MLT1C LTR MaLR -351 116 1 7 726 3704 43 0 0 chr3 18559208 18559653 -141040130 - L1Md_F2 LINE L1 -14 6568 6124 8 726 4294 66 0 0 chr3 18560432 18560964 -141038819 - L1_Mus2 LINE L1 0 6566 6035 8 726 1680 266 101 14 chr3 18561504 18561594 -141038189 + Lx LINE L1 5900 5997 -657 8 726 465 0 0 0 chr3 18561594 18561654 -141038129 - L1Md_T LINE L1 0 6582 6523 8 726 4171 49 0 0 chr3 18561654 18562187 -141037596 + L1Md_T LINE L1 6008 6540 -42 8 726 648 118 242 8 chr3 18563102 18563222 -141036561 + B1_Mus1 SINE Alu 1 148 0 8 726 355 309 0 0 chr3 18563496 18563580 -141036203 + PB1D10 SINE Alu 6 89 -28 8 726 225 176 27 13 chr3 18563614 18563689 -141036094 + GA-rich Low_complexity Low_complexity 4 79 0 8 726 1021 304 104 25 chr3 18563697 18564129 -141035654 - Lx9 LINE L1 -837 6807 6342 8 726 564 29 0 0 chr3 18564135 18564205 -141035578 + (CA)n Simple_repeat Simple_repeat 1 70 0 9 726 259 65 21 21 chr3 18564208 18564255 -141035528 + (GA)n Simple_repeat Simple_repeat 2 48 0 9 726 182 167 28 0 chr3 18565847 18565883 -141033900 + L2b LINE L2 3333 3369 -6 9 726 1217 61 0 0 chr3 18566519 18566667 -141033116 - B1_Mus1 SINE Alu 0 148 1 9 726 478 280 83 8 chr3 18567257 18567390 -141032393 + ID_B1 SINE B4 82 224 0 9 726 664 266 117 34 chr3 18567501 18567766 -141032017 + B4A SINE B4 2 288 -4 9 726 195 139 0 0 chr3 18570816 18570852 -141028931 + (GAGAA)n Simple_repeat Simple_repeat 2 37 0 9 726 256 378 34 34 chr3 18572107 18572255 -141027528 - Tigger7 DNA MER2_type -2204 287 140 9 726 293 296 24 12 chr3 18572267 18572349 -141027434 - Tigger7 DNA MER2_type -2404 87 5 9 726 201 312 0 0 chr3 18572401 18572449 -141027334 + polypurine Low_complexity Low_complexity 1 48 0 9 726 400 130 22 0 chr3 18573015 18573107 -141026676 + (TCTA)n Simple_repeat Simple_repeat 2 95 0 9 726 189 0 0 0 chr3 18573746 18573767 -141026016 + (A)n Simple_repeat Simple_repeat 1 21 0 1 726 26 30 0 0 chr3 18573925 18573958 -141025825 + AT_rich Low_complexity Low_complexity 1 33 0 1 726 1170 48 0 20 chr3 18573959 18574109 -141025674 + B1_Mus2 SINE Alu 1 147 0 1 726 198 0 0 0 chr3 18574109 18574131 -141025652 + (A)n Simple_repeat Simple_repeat 1 22 0 1 726 21 0 0 0 chr3 18574378 18574399 -141025384 + AT_rich Low_complexity Low_complexity 1 21 0 1 726 627 315 41 33 chr3 18575334 18575577 -141024206 + MLT1D LTR MaLR 261 505 0 1 726 591 263 0 0 chr3 18575797 18575915 -141023868 + B1_Mm SINE Alu 3 120 -27 1 726 264 287 35 0 chr3 18576522 18576637 -141023146 + ERVL-B4-int LTR ERVL 5590 5708 -6 1 726 996 321 29 74 chr3 18576643 18577087 -141022696 + MLT2B2 LTR ERVL 1 424 -91 1 726 434 103 13 0 chr3 18577141 18577219 -141022564 + (TC)n Simple_repeat Simple_repeat 2 80 0 1 726 207 100 0 0 chr3 18577219 18577249 -141022534 + (CA)n Simple_repeat Simple_repeat 1 30 0 1 726 246 200 40 0 chr3 18577278 18577328 -141022455 + MLT2B2 LTR ERVL 499 550 -6 1 726 355 263 40 0 chr3 18577357 18577456 -141022327 + MLT1D LTR MaLR 403 505 0 1 726 308 326 98 73 chr3 18577467 18577894 -141021889 - L1MEf LINE L1 -3318 2828 2391 1 726 312 70 0 0 chr3 18577896 18577939 -141021844 + (TG)n Simple_repeat Simple_repeat 1 43 0 1 726 186 43 0 0 chr3 18578274 18578297 -141021486 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 1 726 351 250 58 14 chr3 18578297 18578435 -141021348 - L1MEf LINE L1 -4249 1993 1850 1 726 635 265 135 0 chr3 18578779 18579009 -141020774 - L1MB7 LINE L1 -188 5996 5736 1 726 1167 230 32 59 chr3 18580231 18580569 -141019214 - Lx8 LINE L1 -4 7469 7141 1 726 352 319 43 43 chr3 18580899 18581063 -141018720 - LTR90B LTR LTR -476 320 157 1 726 569 14 14 0 chr3 18581643 18581713 -141018070 + (GAAA)n Simple_repeat Simple_repeat 2 72 0 1 726 504 0 0 0 chr3 18581713 18581769 -141018014 + (GGGA)n Simple_repeat Simple_repeat 3 58 0 1 726 1072 119 6 6 chr3 18581770 18581948 -141017835 + (GGAA)n Simple_repeat Simple_repeat 3 180 0 1 726 315 0 0 0 chr3 18581949 18581984 -141017799 + (GAAA)n Simple_repeat Simple_repeat 1 35 0 1 726 322 306 62 87 chr3 18582367 18582528 -141017255 + MLT1J1 LTR MaLR 44 200 -244 1 726 243 0 0 0 chr3 18583217 18583244 -141016539 + (CA)n Simple_repeat Simple_repeat 2 28 0 1 726 378 0 0 0 chr3 18583321 18583363 -141016420 + (TG)n Simple_repeat Simple_repeat 2 43 0 1 726 255 103 0 0 chr3 18584170 18584209 -141015574 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 726 1067 301 3 35 chr3 18584481 18584763 -141015020 + B4A SINE B4 14 286 -6 1 726 437 0 19 0 chr3 18585942 18585995 -141013788 + (CAAAA)n Simple_repeat Simple_repeat 2 55 0 1 726 291 244 155 0 chr3 18586112 18586232 -141013551 - MIR SINE MIR -85 183 44 1 726 567 0 0 0 chr3 18586479 18586542 -141013241 + (TTTC)n Simple_repeat Simple_repeat 4 66 0 1 726 1129 184 127 46 chr3 18586957 18587264 -141012519 + IAPEY3_LTR LTR ERVK 1 332 0 1 726 556 264 80 40 chr3 18587473 18587674 -141012109 - B3 SINE B2 -6 210 2 1 726 306 341 123 0 chr3 18588197 18588335 -141011448 - HAL1-3A_ME LINE L1 -420 2438 2284 1 726 2340 104 3 24 chr3 18588397 18588731 -141011052 + ORR1A2 LTR MaLR 1 327 0 1 726 3378 233 56 9 chr3 18588878 18589922 -141009861 + RMER1B Other Other 49 1065 -1 1 726 244 185 101 58 chr3 18589953 18590022 -141009761 + ORR1B1 LTR MaLR 286 357 -37 1 726 968 201 63 55 chr3 18590088 18590582 -141009201 + RMER17C LTR ERVK 3 410 0 1 726 384 22 0 0 chr3 18590804 18590849 -141008934 + (CA)n Simple_repeat Simple_repeat 1 45 0 1 726 431 295 11 0 chr3 18591103 18591198 -141008585 + PB1D10 SINE Alu 15 110 -7 1 726 403 352 27 40 chr3 18592161 18592309 -141007474 + RSINE1 SINE B4 12 157 -8 1 726 455 340 77 58 chr3 18592716 18592975 -141006808 + MLT1A0 LTR MaLR 32 295 -70 1 726 668 310 183 10 chr3 18593372 18593662 -141006121 + MER21B LTR ERV1 19 358 -505 1 726 887 174 307 9 chr3 18593719 18593947 -141005836 - RLTR14 LTR ERV1 -85 297 2 1 726 735 267 27 18 chr3 18594319 18594540 -141005243 - LTRIS4 LTR ERV1 0 507 285 1 726 522 129 0 0 chr3 18594883 18594968 -141004815 + (TG)n Simple_repeat Simple_repeat 2 86 0 1 726 195 236 53 35 chr3 18595366 18595423 -141004360 + MIRb SINE MIR 65 122 -146 1 726 313 250 0 15 chr3 18596224 18596289 -141003494 + ID4_ SINE ID 9 72 -11 1 726 1028 51 0 14 chr3 18596293 18596433 -141003350 + (GAAA)n Simple_repeat Simple_repeat 4 141 0 1 726 198 103 0 0 chr3 18596433 18596462 -141003321 + (GGGA)n Simple_repeat Simple_repeat 2 30 0 1 726 4139 61 40 9 chr3 18596520 18597063 -141002720 - LTRIS2 LTR ERV1 0 564 5 1 726 230 337 76 0 chr3 18597764 18597856 -141001927 + ORR1E LTR MaLR 4 102 -257 1 726 1502 204 46 41 chr3 18597983 18598351 -141001432 - ORR1D1 LTR MaLR 0 374 5 1 726 316 336 48 0 chr3 18598438 18598542 -141001241 - PB1D10 SINE Alu -8 109 1 1 726 689 292 40 28 chr3 18601480 18601730 -140998053 + MER2 DNA MER2_type 85 337 -8 1 726 315 265 15 0 chr3 18602374 18602442 -140997341 + MIR3 SINE MIR 90 158 -50 1 726 482 268 71 0 chr3 18602576 18602688 -140997095 - ID_B1 SINE B4 0 224 105 1 726 240 304 38 158 chr3 18602688 18602709 -140997074 - PB1D10 SINE Alu 0 117 1 1 726 3914 100 32 0 chr3 18603184 18603742 -140996041 + L1_Mus3 LINE L1 6056 6631 -7 1 726 303 28 0 0 chr3 18603965 18604001 -140995782 + (GA)n Simple_repeat Simple_repeat 1 36 0 1 726 287 356 121 32 chr3 18605713 18606084 -140993699 - L2 LINE L2 -463 2956 2553 1 726 414 323 133 8 chr3 18606943 18607071 -140992712 + RSINE1 SINE B4 4 147 -18 1 726 292 22 22 22 chr3 18607215 18607261 -140992522 + (CAAAAA)n Simple_repeat Simple_repeat 4 49 0 1 726 622 196 86 0 chr3 18607298 18607461 -140992322 + Lx2B LINE L1 6824 7000 0 1 726 1633 222 30 9 chr3 18609440 18609771 -140990012 + ORR1D1 LTR MaLR 37 374 0 1 726 1075 257 50 25 chr3 18610463 18610870 -140988913 + L1_Rod LINE L1 5429 5827 -20 1 726 334 111 49 0 chr3 18611363 18611444 -140988339 + T-rich Low_complexity Low_complexity 5 89 0 1 727 198 0 0 0 chr3 18614614 18614636 -140985147 + (A)n Simple_repeat Simple_repeat 1 22 0 1 727 320 0 0 24 chr3 18615535 18615576 -140984207 + (CAAA)n Simple_repeat Simple_repeat 2 41 0 1 727 236 191 131 0 chr3 18615873 18615957 -140983826 - RLTR13D1 LTR ERVK -300 506 412 1 727 23 68 0 0 chr3 18616522 18616566 -140983217 + AT_rich Low_complexity Low_complexity 1 44 0 1 727 36202 31 0 0 chr3 18616969 18623332 -140976451 - L1Md_T LINE L1 0 6585 126 1 727 450 237 487 15 chr3 18623917 18624045 -140975738 + MTEa LTR MaLR 3 192 -167 1 727 198 0 0 0 chr3 18624045 18624067 -140975716 + (TC)n Simple_repeat Simple_repeat 2 23 0 1 727 216 0 0 0 chr3 18624067 18624090 -140975693 + (TG)n Simple_repeat Simple_repeat 1 24 0 1 727 617 185 115 23 chr3 18624090 18624233 -140975550 + MTEa LTR MaLR 193 375 -4 1 727 3646 216 3 6 chr3 18624364 18625129 -140974654 + Lx5 LINE L1 6221 7049 -1 1 727 207 0 0 0 chr3 18625985 18626008 -140973775 + (A)n Simple_repeat Simple_repeat 1 23 0 1 727 375 29 0 92 chr3 18626054 18626130 -140973653 + (TTTTG)n Simple_repeat Simple_repeat 2 70 0 1 727 25 0 0 0 chr3 18626437 18626462 -140973321 + AT_rich Low_complexity Low_complexity 1 25 0 1 727 478 279 23 0 chr3 18626671 18626800 -140972983 - MER94 DNA AcHobo 0 134 3 1 727 2246 97 65 8 chr3 18627267 18627622 -140972161 - L1_Mus3 LINE L1 -1 6637 6263 1 727 321 230 170 0 chr3 18627641 18627741 -140972042 - L2c LINE L2 -4 3383 3267 1 727 261 57 0 0 chr3 18628065 18628100 -140971683 + (TGG)n Simple_repeat Simple_repeat 3 37 0 1 727 195 174 72 0 chr3 18628598 18628667 -140971116 + CT-rich Low_complexity Low_complexity 3 76 0 1 727 297 316 13 0 chr3 18629329 18629405 -140970378 - ID4 SINE ID -5 78 2 1 727 622 268 53 94 chr3 18629432 18629835 -140969948 - RMER15 LTR ERVL -45 530 25 1 727 565 210 64 21 chr3 18629872 18630013 -140969770 - B1F1 SINE Alu -1 148 2 1 727 252 0 0 0 chr3 18630441 18630469 -140969314 + (T)n Simple_repeat Simple_repeat 1 28 0 1 727 244 172 224 0 chr3 18631010 18631068 -140968715 - PB1D9 SINE Alu -8 112 42 1 727 823 170 227 16 chr3 18632045 18632230 -140967553 - URR1A DNA MER1_type -2 224 1 1 727 225 0 100 0 chr3 18633054 18633094 -140966689 + (GTTTG)n Simple_repeat Simple_repeat 2 45 0 1 727 908 111 26 7 chr3 18633124 18633278 -140966505 - L1_Mus3 LINE L1 -6 6632 6476 1 727 804 281 102 12 chr3 18633584 18633840 -140965943 + Tigger9b DNA MER2_type 1 279 -345 1 727 286 308 57 23 chr3 18634581 18634757 -140965026 - L1MEd LINE L1 -4869 1250 1069 1 727 21 36 0 0 chr3 18635467 18635495 -140964288 + AT_rich Low_complexity Low_complexity 1 28 0 1 727 276 370 156 11 chr3 18636200 18636809 -140962974 + L2 LINE L2 2279 2975 -444 1 727 335 276 0 54 chr3 18638823 18638934 -140960849 - RMER12 LTR ERVK -478 844 740 1 727 376 326 68 37 chr3 18640842 18641033 -140958750 - MLT1K LTR MaLR -22 573 377 1 727 552 369 132 7 chr3 18641238 18641519 -140958264 + LTR33B LTR ERVL 2 317 -186 1 727 443 304 151 11 chr3 18642103 18642289 -140957494 + Lx9 LINE L1 6365 6576 -1068 1 727 561 125 0 0 chr3 18642476 18642564 -140957219 + (TAG)n Simple_repeat Simple_repeat 2 89 0 1 727 887 349 91 30 chr3 18642828 18643289 -140956494 + MER82 DNA MER2_type 165 653 0 1 727 188 337 0 34 chr3 18643810 18643899 -140955884 - MIRc SINE MIR -17 251 166 2 727 297 0 0 0 chr3 18643919 18643952 -140955831 + (CA)n Simple_repeat Simple_repeat 2 34 0 2 727 22 70 0 0 chr3 18644935 18644978 -140954805 + AT_rich Low_complexity Low_complexity 1 43 0 2 727 180 0 0 0 chr3 18645001 18645021 -140954762 + (TGG)n Simple_repeat Simple_repeat 1 20 0 2 727 342 394 49 49 chr3 18645036 18645199 -140954584 - RSINE1 SINE B4 0 165 3 2 727 594 305 92 17 chr3 18645612 18645852 -140953931 - MER2 DNA MER2_type -63 282 25 2 727 397 271 57 0 chr3 18645955 18646077 -140953706 + MER58C DNA MER1_type 71 199 -16 2 727 6005 76 2 5 chr3 18647255 18648153 -140951630 - L1_Mus4 LINE L1 -234 6402 5507 2 727 1559 101 21 4 chr3 18648153 18648391 -140951392 + L1_Mus4 LINE L1 6383 6624 -12 2 727 798 293 66 69 chr3 18652139 18652487 -140947296 - ORR1E LTR MaLR -7 352 6 2 727 513 110 0 0 chr3 18652510 18652601 -140947182 + (TTGG)n Simple_repeat Simple_repeat 1 91 0 2 727 373 293 49 0 chr3 18652602 18652725 -140947058 - B1F SINE Alu -2 147 19 2 727 1027 309 142 28 chr3 18654294 18654766 -140945017 + MER44B DNA MER2_type 24 549 -1 2 727 324 322 207 22 chr3 18655034 18655302 -140944481 - MLT1C LTR MaLR -36 431 114 2 727 399 41 0 0 chr3 18656138 18656187 -140943596 + (TCTA)n Simple_repeat Simple_repeat 2 50 0 2 727 219 277 0 15 chr3 18656188 18656254 -140943529 + (TG)n Simple_repeat Simple_repeat 2 66 0 2 727 734 225 96 5 chr3 18658060 18658248 -140941535 + B3 SINE B2 2 206 -10 2 727 22 0 0 0 chr3 18658296 18658318 -140941465 + AT_rich Low_complexity Low_complexity 1 22 0 2 727 254 174 73 104 chr3 18660074 18660170 -140939613 + MLT1I LTR MaLR 283 375 -36 2 727 966 83 0 8 chr3 18660954 18661088 -140938695 + B1_Mm SINE Alu 14 146 -1 2 727 1290 87 21 21 chr3 18661398 18661586 -140938197 - B2_Mm2 SINE B2 -6 189 2 2 727 286 250 68 0 chr3 18661595 18661683 -140938100 - MLT1A1 LTR MaLR -2 406 313 2 727 4470 124 32 10 chr3 18662206 18662889 -140936894 + Lx4A LINE L1 6361 7058 0 2 727 22 0 0 0 chr3 18662923 18662945 -140936838 + AT_rich Low_complexity Low_complexity 1 22 0 2 727 375 288 218 82 chr3 18663241 18663498 -140936285 + B4A SINE B4 1 292 0 2 727 841 144 11 17 chr3 18663506 18663683 -140936100 + (TATATG)n Simple_repeat Simple_repeat 3 178 0 2 727 189 234 123 15 chr3 18665210 18665275 -140934508 - L2a LINE L2 0 3426 3355 2 727 693 306 12 0 chr3 18665405 18665565 -140934218 + B3A SINE B2 3 164 -34 2 727 651 241 0 0 chr3 18665587 18666165 -140933618 + (TG)n Simple_repeat Simple_repeat 1 578 0 2 727 387 0 0 0 chr3 18667741 18667784 -140931999 + (CA)n Simple_repeat Simple_repeat 1 43 0 2 727 251 300 111 6 chr3 18667991 18668101 -140931682 + MLT1A LTR MaLR 1 124 -284 2 727 464 228 46 23 chr3 18668121 18668251 -140931532 + MLT1A LTR MaLR 241 373 -1 2 727 424 315 74 15 chr3 18668512 18668715 -140931068 - MIRb SINE MIR -27 241 27 2 727 2676 150 134 19 chr3 18668728 18669252 -140930531 - RLTR31A_Mm LTR ERVK 0 584 1 2 727 1117 294 95 25 chr3 18670246 18670960 -140928823 - L1MA6 LINE L1 -150 6150 5387 2 727 1024 205 11 0 chr3 18671066 18671242 -140928541 - ORR1C1 LTR MaLR 0 378 201 2 727 4249 77 179 9 chr3 18671242 18671935 -140927848 + RLTR22_Mus LTR ERVK 1 811 -997 2 727 1491 137 23 35 chr3 18672205 18672462 -140927321 + RLTR22_Mur LTR ERVK 1591 1844 -4 2 727 864 273 29 10 chr3 18672603 18672810 -140926973 + B3 SINE B2 3 213 -3 2 727 1146 210 34 57 chr3 18672832 18673095 -140926688 + ORR1C1 LTR MaLR 1 257 -121 2 727 1053 265 54 13 chr3 18673127 18673575 -140926208 - L1MA6 LINE L1 -949 5194 4729 2 727 388 273 115 13 chr3 18673596 18673752 -140926031 + L1M2 LINE L1 4341 4512 -1631 2 727 2117 130 17 6 chr3 18673829 18674184 -140925599 + RLTR15 LTR ERVK 1 359 0 2 727 868 233 45 9 chr3 18674193 18674414 -140925369 - Lx8 LINE L1 -617 6856 6628 2 727 1066 224 4 43 chr3 18674430 18674687 -140925096 - Lx8 LINE L1 -928 6545 6299 2 727 445 292 10 0 chr3 18674717 18674813 -140924970 - PB1D10 SINE Alu -20 97 1 2 727 470 269 29 0 chr3 18674824 18674928 -140924855 - PB1D7 SINE Alu -13 107 1 2 727 236 309 8 86 chr3 18674833 18674950 -140924833 - MT2B2 LTR ERVL -333 251 144 2 727 299 320 20 0 chr3 18675245 18675345 -140924438 - MIR SINE MIR -3 259 158 2 727 724 289 48 62 chr3 18675379 18675670 -140924113 - MLT1B LTR MaLR 0 390 104 2 727 231 343 14 20 chr3 18675780 18675820 -140923963 + polypurine Low_complexity Low_complexity 5 44 0 2 727 313 317 10 0 chr3 18675820 18675921 -140923862 + PB1D10 SINE Alu 2 103 -14 2 727 231 343 14 20 chr3 18675921 18676026 -140923757 + GA-rich Low_complexity Low_complexity 45 148 0 2 727 459 0 0 0 chr3 18676040 18676091 -140923692 + (CA)n Simple_repeat Simple_repeat 2 52 0 2 727 336 245 171 5 chr3 18676096 18676313 -140923470 + L1MA9 LINE L1 5868 6120 -192 2 727 245 230 108 0 chr3 18676458 18676532 -140923251 - MLT1B LTR MaLR -296 94 13 2 727 626 250 27 20 chr3 18679994 18680141 -140919642 + B1_Mur1 SINE Alu 2 149 0 2 727 1989 271 138 6 chr3 18680269 18681001 -140918782 + Lx8 LINE L1 6643 7471 -2 2 727 33 80 0 0 chr3 18681125 18681200 -140918583 + AT_rich Low_complexity Low_complexity 1 75 0 2 727 1408 302 73 48 chr3 18681200 18682188 -140917595 + L1_Mur3 LINE L1 3318 4330 -1550 2 727 542 303 39 36 chr3 18682230 18682590 -140917193 + Lx8 LINE L1 4800 5160 -687 2 727 4790 221 59 29 chr3 18682590 18683709 -140916074 + Lx9 LINE L1 6331 7458 -186 2 727 275 65 22 0 chr3 18683709 18683755 -140916028 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 2 727 1114 80 0 0 chr3 18683755 18683892 -140915891 - B1_Mus1 SINE Alu -9 139 3 2 727 4790 221 59 29 chr3 18683892 18684036 -140915747 + Lx9 LINE L1 7459 7633 -11 2 727 1120 281 104 15 chr3 18684045 18684537 -140915246 + Lx8 LINE L1 5335 5903 -1793 2 727 284 340 0 0 chr3 18684674 18684777 -140915006 - Lx6 LINE L1 -1065 6395 6293 2 727 810 232 115 12 chr3 18684792 18685036 -140914747 + Lx6 LINE L1 7180 7448 -12 2 727 2342 284 97 28 chr3 18685144 18686156 -140913627 + Lx8 LINE L1 6100 7181 -292 2 727 186 43 0 0 chr3 18686176 18686199 -140913584 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2 727 297 156 62 0 chr3 18686438 18686502 -140913281 + L1MA4 LINE L1 4884 4951 -1192 2 727 418 288 182 35 chr3 18686561 18687167 -140912616 + L1MA4 LINE L1 5006 5765 -538 2 727 268 235 61 3 chr3 18687188 18687279 -140912504 + L1MA4 LINE L1 5809 5930 -370 2 727 954 204 39 60 chr3 18688309 18688543 -140911240 - MTD LTR MaLR -190 229 1 2 727 226 309 82 75 chr3 18689126 18689154 -140910629 + MER3 DNA MER1_type 1 27 -182 2 727 4313 46 40 9 chr3 18689154 18689697 -140910086 + LTRIS2 LTR ERV1 5 564 0 2 727 226 309 82 75 chr3 18689697 18689815 -140909968 + MER3 DNA MER1_type 28 148 -61 2 727 517 138 154 68 chr3 18690048 18690102 -140909681 - B1_Mus1 SINE Alu 0 148 81 2 727 351 0 0 0 chr3 18690102 18690141 -140909642 + (TC)n Simple_repeat Simple_repeat 1 39 0 2 727 252 0 0 0 chr3 18690141 18690168 -140909615 + (CA)n Simple_repeat Simple_repeat 1 28 0 2 727 517 138 154 68 chr3 18690168 18690229 -140909554 - B1_Mus1 SINE Alu -68 80 23 2 727 702 290 122 75 chr3 18690413 18690838 -140908945 - MLT1D LTR MaLR -56 449 5 2 727 7790 195 36 37 chr3 18691043 18692794 -140906989 + Lx6 LINE L1 5378 7112 -348 2 727 471 113 0 0 chr3 18692794 18692865 -140906918 + (TA)n Simple_repeat Simple_repeat 2 72 0 2 727 7790 209 44 42 chr3 18692865 18693180 -140906603 + Lx6 LINE L1 7113 7457 -3 2 727 672 232 14 0 chr3 18694227 18694369 -140905414 - B1_Mur1 SINE Alu -4 145 2 2 727 240 265 29 29 chr3 18694421 18694491 -140905292 - ORR1E LTR MaLR -23 356 287 2 727 486 309 26 13 chr3 18694524 18694675 -140905108 - ORR1E LTR MaLR -206 153 1 2 727 36 40 0 0 chr3 18694935 18694985 -140904798 + AT_rich Low_complexity Low_complexity 1 50 0 2 727 870 279 24 16 chr3 18695253 18695501 -140904282 + Lx6 LINE L1 7042 7291 -169 2 727 338 61 20 0 chr3 18695509 18695558 -140904225 + (TGAA)n Simple_repeat Simple_repeat 3 52 0 2 727 1895 216 56 19 chr3 18695763 18696193 -140903590 + RLTR41 LTR ERV1 1 446 0 2 727 1862 269 101 90 chr3 18697815 18698747 -140901036 + Lx8 LINE L1 6521 7462 -11 2 727 9266 10 1 0 chr3 18699393 18700492 -140899291 - L1Md_T LINE L1 -94 5789 4690 2 727 6607 35 0 1 chr3 18700492 18701273 -140898510 + L1Md_T LINE L1 5803 6582 0 2 727 213 39 0 0 chr3 18701392 18701418 -140898365 + (A)n Simple_repeat Simple_repeat 1 26 0 2 727 322 154 91 15 chr3 18701850 18701916 -140897867 - MLT1J LTR MaLR -340 172 102 2 727 734 297 71 15 chr3 18705038 18705448 -140894335 + L1MC4 LINE L1 6658 7090 -952 2 727 394 344 60 18 chr3 18705486 18705871 -140893912 + L1MC4 LINE L1 7262 7662 -380 2 727 272 233 34 20 chr3 18706148 18706222 -140893561 + B1F SINE Alu 17 118 -31 2 727 356 40 20 0 chr3 18706234 18706284 -140893499 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 2 727 7133 66 18 11 chr3 18706343 18707595 -140892188 + L1_Mus1 LINE L1 5306 6566 -1 2 727 706 282 171 16 chr3 18708280 18708469 -140891314 + B4 SINE B4 6 224 -68 2 727 264 59 0 0 chr3 18708469 18708503 -140891280 + (CATA)n Simple_repeat Simple_repeat 3 36 0 2 727 706 282 171 16 chr3 18708503 18708558 -140891225 + B4 SINE B4 225 288 -4 2 727 186 354 30 15 chr3 18708625 18708691 -140891092 - MIR SINE MIR -165 97 31 2 727 192 240 140 0 chr3 18708671 18708721 -140891062 - L2 LINE L2 -3355 64 8 2 727 300 266 41 41 chr3 18708722 18708820 -140890963 + L3 LINE CR1 3426 3523 -966 2 727 13097 98 13 7 chr3 18709259 18712223 -140887560 + L1VL2 LINE L1 1 2983 -632 2 727 675 136 0 0 chr3 18712300 18712410 -140887373 + (GGAA)n Simple_repeat Simple_repeat 3 112 0 2 727 567 294 0 0 chr3 18712545 18712705 -140887078 + L1M1 LINE L1 5523 5682 -618 2 727 24 0 0 0 chr3 18712911 18712935 -140886848 + AT_rich Low_complexity Low_complexity 1 24 0 2 727 432 313 117 33 chr3 18713577 18713973 -140885810 - L1MD1 LINE L1 -220 6139 5696 2 727 384 338 77 56 chr3 18714026 18714365 -140885418 + L1MC4 LINE L1 7695 8040 -2 2 727 288 246 0 0 chr3 18714512 18714581 -140885202 - ID4 SINE ID -12 71 3 2 727 940 146 172 0 chr3 18714749 18714941 -140884842 - URR1B DNA MER1_type 0 225 1 2 727 235 310 153 15 chr3 18714942 18715073 -140884710 + MIR SINE MIR 31 179 -83 2 727 2387 146 23 5 chr3 18716868 18717255 -140882528 - ORR1B1 LTR MaLR 0 394 1 3 727 534 308 21 7 chr3 18717369 18717513 -140882270 - RSINE1 SINE B4 0 165 20 3 727 252 0 0 0 chr3 18719005 18719033 -140880750 + (A)n Simple_repeat Simple_repeat 1 28 0 3 727 518 341 167 18 chr3 18719047 18719322 -140880461 - MTD LTR MaLR -92 327 12 3 727 320 277 108 14 chr3 18719327 18719466 -140880317 - MTD-int LTR MaLR -4 1254 1103 3 727 1116 95 0 20 chr3 18719466 18719616 -140880167 + B1_Mus1 SINE Alu 1 147 -1 3 727 226 174 87 0 chr3 18719631 18719677 -140880106 + B3 SINE B2 65 114 -102 3 727 26 0 0 0 chr3 18719692 18719718 -140880065 + AT_rich Low_complexity Low_complexity 1 26 0 3 727 2599 138 44 2 chr3 18720038 18720495 -140879288 - Lx2 LINE L1 -276 5607 5132 3 727 5972 152 13 7 chr3 18720491 18721524 -140878259 + Lx2 LINE L1 5596 6634 -363 3 727 1482 138 4 0 chr3 18721524 18721756 -140878027 + Lx2 LINE L1 6765 6997 0 3 727 227 325 65 41 chr3 18722111 18722281 -140877502 - LTRIS_Mus LTR ERV1 -54 533 360 3 727 261 0 0 0 chr3 18722485 18722514 -140877269 + (TTG)n Simple_repeat Simple_repeat 2 30 0 3 727 363 314 104 5 chr3 18722548 18722750 -140877033 + L1_Mur2 LINE L1 1700 1921 -3959 3 727 509 249 99 6 chr3 18723037 18723219 -140876564 + L1_Mur2 LINE L1 2135 2333 -3547 3 727 524 242 53 1 chr3 18723216 18723398 -140876385 + L1_Mur2 LINE L1 2463 2652 -3228 3 727 3418 79 71 0 chr3 18723399 18723879 -140875904 - MT2B2 LTR ERVL 0 584 71 3 727 679 243 48 45 chr3 18723879 18724189 -140875594 - L1_Mur3 LINE L1 -1508 4372 4062 3 727 3433 35 196 18 chr3 18724238 18724734 -140875049 - RLTR6_Mm LTR ERV1 -70 584 1 3 727 1786 270 52 101 chr3 18724734 18725996 -140873787 - L1_Mur3 LINE L1 -1970 3910 2711 3 727 270 288 0 0 chr3 18726603 18726669 -140873114 + RMER1B Other Other 1 66 -1000 3 727 2368 245 21 132 chr3 18726682 18727841 -140871942 + RMER1A Other Other 34 755 -275 3 727 560 253 63 24 chr3 18727870 18728150 -140871633 + Lx8 LINE L1 5630 5959 -1685 3 727 405 0 0 0 chr3 18728412 18728457 -140871326 + (TTTTG)n Simple_repeat Simple_repeat 2 46 0 3 727 1080 95 0 7 chr3 18728457 18728596 -140871187 - B1_Mm SINE Alu -8 139 1 3 727 3123 110 48 29 chr3 18728601 18729125 -140870658 + RLTR13D1 LTR ERVK 10 543 -359 3 727 3732 74 25 25 chr3 18729102 18729672 -140870111 + RLTR13D1 LTR ERVK 231 893 0 3 727 1078 261 310 0 chr3 18729917 18730253 -140869530 + Lx8 LINE L1 6203 6642 -831 3 727 185 258 97 0 chr3 18730305 18730367 -140869416 - L3 LINE CR1 -4310 179 112 3 727 469 152 114 0 chr3 18731595 18731674 -140868109 + PB1D10 SINE Alu 3 90 -27 3 727 256 336 81 8 chr3 18731683 18731941 -140867842 - L1MA5 LINE L1 -241 6059 5783 3 727 307 269 9 9 chr3 18731943 18732052 -140867731 + (TG)n Simple_repeat Simple_repeat 2 110 0 3 727 429 141 0 0 chr3 18732053 18732124 -140867659 + (TA)n Simple_repeat Simple_repeat 2 72 0 3 727 470 239 49 6 chr3 18732147 18732332 -140867451 + (TG)n Simple_repeat Simple_repeat 1 192 0 3 727 208 212 21 35 chr3 18732407 18732549 -140867234 + (TG)n Simple_repeat Simple_repeat 1 140 0 3 727 271 366 67 18 chr3 18733308 18733472 -140866311 + LTR40a LTR ERVL 33 204 -315 3 727 342 0 0 0 chr3 18733554 18733592 -140866191 + (CA)n Simple_repeat Simple_repeat 2 39 0 3 727 378 325 150 26 chr3 18733718 18733952 -140865831 + L1M5 LINE L1 3588 3850 -2296 3 727 425 302 133 7 chr3 18733961 18734111 -140865672 + B3A SINE B2 14 182 -16 3 727 23 0 0 0 chr3 18734198 18734221 -140865562 + AT_rich Low_complexity Low_complexity 1 23 0 3 727 363 78 0 0 chr3 18736164 18736215 -140863568 + (TA)n Simple_repeat Simple_repeat 1 51 0 3 727 2918 103 0 0 chr3 18737172 18737568 -140862215 - MTB LTR MaLR -2 398 3 3 727 5348 166 127 18 chr3 18737575 18737964 -140861819 - MTB-int LTR MaLR -5 1253 779 3 727 2207 86 16 7 chr3 18737964 18738270 -140861513 + RLTR27 LTR ERVK 1 309 0 3 727 5348 166 127 18 chr3 18738270 18739010 -140860773 - MTB-int LTR MaLR -480 778 1 3 727 2083 114 26 0 chr3 18739014 18739320 -140860463 - MTB LTR MaLR -8 319 6 3 727 273 289 26 0 chr3 18739926 18740002 -140859781 - MLT1A0 LTR MaLR -17 348 271 3 727 314 315 44 26 chr3 18740033 18740147 -140859636 + MLT1F2 LTR MaLR 1 116 -444 3 727 354 272 99 11 chr3 18740156 18740338 -140859445 - Kanga2_a DNA Tc2 -198 690 493 3 727 313 307 119 21 chr3 18740742 18741142 -140858641 - L1MA8 LINE L1 -292 6008 5571 3 727 585 345 116 10 chr3 18741152 18741541 -140858242 - MLT1D LTR MaLR -45 460 31 3 727 267 79 0 0 chr3 18741985 18742023 -140857760 + (CA)n Simple_repeat Simple_repeat 2 39 0 3 727 299 162 66 105 chr3 18742100 18742176 -140857607 + RLTR25B LTR ERVK 437 509 -519 3 727 851 29 0 0 chr3 18742116 18742219 -140857564 + B1_Mus2 SINE Alu 45 147 0 3 727 439 54 27 13 chr3 18742219 18742294 -140857489 + (CAAAA)n Simple_repeat Simple_repeat 5 80 0 3 727 350 274 50 39 chr3 18742435 18742586 -140857197 + PB1D10 SINE Alu 3 149 0 3 727 438 301 53 42 chr3 18742644 18743004 -140856779 + L1MEc LINE L1 1777 2140 -4260 3 90 2062 157 80 16 chr3 18743087 18743474 -140856309 - MTC LTR MaLR -9 412 1 3 728 228 167 0 0 chr3 18743533 18743581 -140856202 + (CATATA)n Simple_repeat Simple_repeat 3 50 0 3 728 843 324 52 20 chr3 18743645 18744184 -140855599 + L1MA9 LINE L1 5757 6312 0 3 728 339 264 11 44 chr3 18744219 18744310 -140855473 + B1F SINE Alu 23 110 -37 3 728 600 284 77 83 chr3 18745189 18745538 -140854245 - ORR1E LTR MaLR -2 357 11 3 728 192 40 0 0 chr3 18745541 18745566 -140854217 + (TA)n Simple_repeat Simple_repeat 2 26 0 3 728 28 29 0 0 chr3 18745566 18745601 -140854182 + AT_rich Low_complexity Low_complexity 1 35 0 3 728 252 118 32 113 chr3 18745601 18745725 -140854058 + (CATAT)n Simple_repeat Simple_repeat 2 115 0 3 728 639 293 115 20 chr3 18745767 18745893 -140853890 - MTE2b-int LTR MaLR -96 1484 1343 3 728 239 0 32 0 chr3 18745893 18745924 -140853859 + (TAAAA)n Simple_repeat Simple_repeat 5 36 0 3 728 639 293 115 20 chr3 18745924 18746041 -140853742 - MTE2b-int LTR MaLR -238 1342 1218 3 728 673 288 43 64 chr3 18746062 18746457 -140853326 - RLTR33 LTR ERVK -30 648 175 3 728 637 356 121 33 chr3 18746513 18747001 -140852782 - MT2A LTR ERVL -1 532 2 3 728 1155 339 49 41 chr3 18747001 18747509 -140852274 - MTE2b-int LTR MaLR -371 1209 698 3 728 3648 214 82 35 chr3 18747552 18748537 -140851246 - Lx9 LINE L1 -5 7639 6609 3 728 258 354 0 0 chr3 18748537 18748616 -140851167 - MTE2b-int LTR MaLR -908 672 594 3 728 853 283 63 38 chr3 18748628 18748944 -140850839 - MTE2b-int LTR MaLR -1029 551 228 3 728 834 275 85 69 chr3 18749012 18749461 -140850322 - RLTR12B LTR ERVK -31 497 42 3 728 297 0 0 0 chr3 18749524 18749557 -140850226 + (TTTA)n Simple_repeat Simple_repeat 1 33 0 3 728 2475 240 16 14 chr3 18749569 18750127 -140849656 - Lx5 LINE L1 -46 7004 6446 3 728 629 250 47 32 chr3 18750127 18750317 -140849466 - MTE2b-int LTR MaLR -1386 194 2 3 728 321 308 7 103 chr3 18750295 18750440 -140849343 - MTE2b LTR MaLR -3 376 246 3 728 565 228 85 37 chr3 18750507 18750671 -140849112 - Lx6 LINE L1 -1193 6267 6096 3 728 1505 178 49 3 chr3 18750680 18750967 -140848816 + Lx6 LINE L1 7156 7455 -5 3 728 260 258 37 102 chr3 18751011 18751119 -140848664 - MTE2b LTR MaLR -253 106 1 3 728 447 19 0 0 chr3 18751125 18751177 -140848606 + (TG)n Simple_repeat Simple_repeat 1 52 0 3 728 351 0 0 0 chr3 18751177 18751215 -140848568 + (GA)n Simple_repeat Simple_repeat 1 39 0 3 728 273 331 37 0 chr3 18751273 18751409 -140848374 + L1ME2 LINE L1 6011 6151 -13 3 728 931 290 110 35 chr3 18751592 18752100 -140847683 - Lx8 LINE L1 -221 7252 6707 3 728 29 0 0 0 chr3 18752366 18752395 -140847388 + AT_rich Low_complexity Low_complexity 1 29 0 3 728 189 327 26 88 chr3 18752628 18752742 -140847041 - L2 LINE L2 -913 2506 2400 3 728 36492 15 2 7 chr3 18752742 18758333 -140841450 + L1Md_A LINE L1 25 5586 -297 3 728 8817 15 0 0 chr3 18758333 18759389 -140840394 + L1Md_A LINE L1 5587 6582 0 3 728 975 118 3 0 chr3 18759393 18759554 -140840229 - Lx LINE L1 -528 6108 5945 3 728 7239 94 17 1 chr3 18759555 18760940 -140838843 - L1_Mus3 LINE L1 -7 6631 5231 3 728 1033 139 0 0 chr3 18760935 18761101 -140838682 - Lx LINE L1 -681 5973 5808 3 728 4428 136 17 4 chr3 18761104 18761907 -140837876 - L1_Mur2 LINE L1 -1451 4426 3613 3 728 386 225 0 0 chr3 18761907 18761978 -140837805 - ORR1D1 LTR MaLR -303 71 1 3 728 310 148 19 0 chr3 18762079 18762133 -140837650 + B3A SINE B2 3 57 -141 3 728 21 36 0 0 chr3 18762163 18762191 -140837592 + AT_rich Low_complexity Low_complexity 1 28 0 3 728 524 317 7 20 chr3 18762361 18762509 -140837274 + ORR1E LTR MaLR 4 149 -210 3 728 337 312 39 80 chr3 18762507 18762779 -140837004 + MTEa LTR MaLR 89 379 0 3 728 283 23 22 22 chr3 18763419 18763464 -140836319 + (TTTG)n Simple_repeat Simple_repeat 4 48 0 3 728 202 234 221 18 chr3 18763606 18763719 -140836064 - MIR SINE MIR -72 190 55 3 728 227 222 0 16 chr3 18765634 18765698 -140834085 + (TTTA)n Simple_repeat Simple_repeat 3 65 0 3 728 938 231 31 116 chr3 18766298 18766617 -140833166 + B4 SINE B4 1 292 0 3 728 685 210 0 16 chr3 18766657 18766783 -140833000 - MTC LTR MaLR 0 421 298 3 728 732 333 91 18 chr3 18766830 18767042 -140832741 - MLT2B2 LTR ERVL -220 295 86 3 728 441 0 0 0 chr3 18767042 18767091 -140832692 + (CA)n Simple_repeat Simple_repeat 1 49 0 3 728 732 333 91 18 chr3 18767091 18767153 -140832630 - MLT2B2 LTR ERVL -430 85 2 3 728 644 233 128 117 chr3 18767266 18767641 -140832142 + MTE2a LTR MaLR 1 379 0 3 728 549 341 159 38 chr3 18768625 18769556 -140830227 - L2a LINE L2 -56 3370 2324 3 728 609 273 40 14 chr3 18769642 18769865 -140829918 + Charlie1b DNA MER1_type 70 298 -225 3 728 604 338 93 11 chr3 18770121 18770390 -140829393 + B4A SINE B4 2 292 0 3 728 232 313 0 0 chr3 18770394 18770461 -140829322 + (CATA)n Simple_repeat Simple_repeat 3 69 0 3 728 246 81 0 0 chr3 18770462 18770499 -140829284 + (GA)n Simple_repeat Simple_repeat 2 38 0 3 728 22 56 0 0 chr3 18770509 18770545 -140829238 + AT_rich Low_complexity Low_complexity 1 36 0 3 728 1928 293 88 21 chr3 18770546 18771354 -140828429 + Lx8 LINE L1 6191 7052 -421 3 728 13644 145 5 41 chr3 18771358 18773923 -140825860 + L1VL4 LINE L1 356 2889 -2997 3 728 378 0 0 0 chr3 18773923 18773965 -140825818 + (TC)n Simple_repeat Simple_repeat 2 43 0 3 728 372 22 0 0 chr3 18773965 18774009 -140825774 + (TG)n Simple_repeat Simple_repeat 2 46 0 3 728 341 217 15 37 chr3 18774009 18774143 -140825640 + RMER17B LTR ERVK 328 458 -500 3 728 842 0 10 0 chr3 18774143 18774241 -140825542 + (GA)n Simple_repeat Simple_repeat 2 100 0 3 728 13644 157 6 62 chr3 18774241 18775377 -140824406 + L1VL4 LINE L1 2890 4021 -1865 3 728 899 184 117 56 chr3 18775380 18775576 -140824207 - MT2B LTR ERVL -321 280 73 3 728 1430 190 44 22 chr3 18775442 18775807 -140823976 - ORR1A1-int LTR MaLR -1163 800 459 4 728 264 305 109 32 chr3 18775808 18775964 -140823819 - L2a LINE L2 -1856 1563 1396 3 728 376 280 68 8 chr3 18775964 18776097 -140823686 + B1F SINE Alu 1 141 -8 4 728 243 0 0 0 chr3 18776211 18776238 -140823545 + (GA)n Simple_repeat Simple_repeat 2 28 0 4 728 258 218 30 0 chr3 18777288 18777375 -140822408 + L1MB3 LINE L1 5870 5962 -221 4 728 228 269 73 44 chr3 18777422 18777558 -140822225 + L1MB3 LINE L1 6037 6176 -7 4 728 689 253 0 58 chr3 18778559 18778731 -140821052 - RSINE1 SINE B4 0 165 4 4 728 369 0 0 0 chr3 18778794 18778835 -140820948 + (TG)n Simple_repeat Simple_repeat 2 42 0 4 728 223 260 0 0 chr3 18779370 18779420 -140820363 + L2 LINE L2 2710 2759 -660 4 728 242 265 101 10 chr3 18779894 18779993 -140819790 - MLT1A1 LTR MaLR -298 110 3 4 728 1567 263 45 15 chr3 18780097 18780498 -140819285 - MTC LTR MaLR -8 413 1 4 728 328 308 0 0 chr3 18780582 18780673 -140819110 + MLT1C LTR MaLR 55 145 -322 4 728 249 33 0 0 chr3 18781721 18781751 -140818032 + (C)n Simple_repeat Simple_repeat 1 30 0 4 728 372 43 0 0 chr3 18782174 18782220 -140817563 + (TTTA)n Simple_repeat Simple_repeat 2 47 0 4 728 2456 187 44 40 chr3 18784223 18784720 -140815063 - RLTR19 LTR ERVK 0 499 1 4 728 556 243 57 35 chr3 18784720 18784861 -140814922 + B3A SINE B2 55 198 0 4 728 573 297 5 77 chr3 18784933 18785141 -140814642 - B3A SINE B2 -3 195 3 4 728 1547 186 14 77 chr3 18785355 18785704 -140814079 + ORR1A4 LTR MaLR 1 327 -2 4 728 9255 140 48 134 chr3 18785707 18786888 -140812895 + ORR1A4-int LTR MaLR 2 1090 -873 4 728 189 0 0 0 chr3 18786888 18786909 -140812874 + (CA)n Simple_repeat Simple_repeat 2 22 0 4 728 9255 140 48 134 chr3 18786909 18787858 -140811925 + ORR1A4-int LTR MaLR 1091 1948 -15 4 728 1868 152 3 73 chr3 18787867 18788221 -140811562 + ORR1A4 LTR MaLR 1 329 0 4 728 971 262 91 14 chr3 18789133 18789298 -140810485 + MTEb LTR MaLR 1 181 -198 4 728 825 11 0 0 chr3 18789298 18789392 -140810391 + (GAGAA)n Simple_repeat Simple_repeat 1 94 0 4 728 971 262 91 14 chr3 18789392 18789578 -140810205 + MTEb LTR MaLR 182 378 -1 4 728 671 357 93 49 chr3 18790834 18791179 -140808604 + MER77 LTR ERVL 41 400 -207 4 728 988 240 15 0 chr3 18791306 18791506 -140808277 - MTEb LTR MaLR -7 372 170 4 728 2329 221 124 59 chr3 18791615 18792293 -140807490 + RMER13A LTR ERVK 76 860 0 4 728 485 257 0 19 chr3 18792293 18792400 -140807383 - MTEb LTR MaLR -266 113 9 4 728 207 69 0 0 chr3 18792612 18792641 -140807142 + (TAA)n Simple_repeat Simple_repeat 2 30 0 4 728 267 339 69 23 chr3 18793180 18793310 -140806473 + RSINE1 SINE B4 2 137 -28 4 728 21 36 0 0 chr3 18793821 18793849 -140805934 + AT_rich Low_complexity Low_complexity 1 28 0 4 728 1695 263 16 24 chr3 18793849 18793890 -140805893 - Lx6 LINE L1 -26 7434 7398 4 728 3261 33 10 0 chr3 18793890 18794282 -140805501 + MTA_Mm LTR MaLR 1 396 0 4 728 8751 46 13 4 chr3 18794282 18795370 -140804413 + MTA_Mm-int LTR MaLR 1 1098 0 4 728 3349 35 5 0 chr3 18795370 18795764 -140804019 + MTA_Mm LTR MaLR 1 396 0 4 728 1695 263 16 24 chr3 18795764 18796211 -140803572 - Lx6 LINE L1 -63 7397 6950 4 728 2130 123 3 59 chr3 18796261 18796599 -140803184 - ORR1A2 LTR MaLR -8 319 1 4 728 394 246 24 66 chr3 18796832 18797045 -140802738 - Lx9 LINE L1 -49 7595 7392 4 728 325 328 107 74 chr3 18797264 18797369 -140802414 + LTR78 LTR ERV1 270 376 -928 4 728 1360 240 79 10 chr3 18797369 18797761 -140802022 + MTD LTR MaLR 1 419 0 4 728 325 328 107 74 chr3 18797761 18797899 -140801884 + LTR78 LTR ERV1 377 521 -783 4 728 25911 129 24 13 chr3 18797919 18803894 -140795889 + L1_Mus3 LINE L1 611 6637 -1 4 728 501 338 60 23 chr3 18804065 18804413 -140795370 - MLT1A0 LTR MaLR -4 361 1 4 728 281 333 42 0 chr3 18807171 18807291 -140792492 - MER5A1 DNA MER1_type -41 125 1 4 728 344 152 0 15 chr3 18808192 18808259 -140791524 + CT-rich Low_complexity Low_complexity 3 68 0 4 728 2148 256 62 16 chr3 18809106 18809730 -140790053 + Lx6 LINE L1 6797 7449 -11 4 728 1988 151 0 62 chr3 18810288 18810726 -140789057 + ORR1A3 LTR MaLR 1 326 0 4 728 1052 263 50 14 chr3 18810726 18811003 -140788780 + ORR1D1 LTR MaLR 88 374 0 4 728 475 322 97 23 chr3 18811463 18811771 -140788012 - L1MEf LINE L1 -3229 3613 3283 4 728 407 262 101 162 chr3 18811977 18812323 -140787460 - RMER20A LTR ERVK -70 557 233 4 728 407 319 134 33 chr3 18812507 18813381 -140786402 - L1MEf LINE L1 -3536 3309 1917 4 728 302 279 0 0 chr3 18813659 18813720 -140786063 + tRNA-Ala-GCA tRNA tRNA 6 66 -9 4 728 302 333 0 0 chr3 18813720 18813731 -140786052 + ID4_ SINE ID 12 83 0 4 728 22 0 0 0 chr3 18813731 18813753 -140786030 + AT_rich Low_complexity Low_complexity 1 22 0 4 728 438 69 0 0 chr3 18813980 18814038 -140785745 + (TA)n Simple_repeat Simple_repeat 2 59 0 4 728 271 0 25 25 chr3 18814181 18814221 -140785562 + (TTTTG)n Simple_repeat Simple_repeat 2 41 0 4 728 412 276 77 51 chr3 18814302 18814654 -140785129 - L1MC5 LINE L1 -517 7444 7084 4 728 200 56 0 77 chr3 18815429 18815468 -140784315 + (TAAAA)n Simple_repeat Simple_repeat 2 37 0 4 728 522 329 32 49 chr3 18815747 18815993 -140783790 + MLT1C LTR MaLR 157 398 -69 4 728 1676 252 63 16 chr3 18816076 18816568 -140783215 - Lx7 LINE L1 -531 7165 6651 4 728 1717 244 41 29 chr3 18816561 18817156 -140782627 - Lx7 LINE L1 -1750 5946 5362 4 728 1894 211 48 10 chr3 18817158 18817556 -140782227 - MTC LTR MaLR -8 413 1 4 728 431 207 41 7 chr3 18817559 18817705 -140782078 - Lx7 LINE L1 -515 5365 5215 4 728 1320 253 49 6 chr3 18817705 18818031 -140781752 - ORR1D1 LTR MaLR 0 374 35 4 728 3335 185 167 111 chr3 18818079 18818446 -140781337 - Lx7 LINE L1 -726 5154 4667 4 728 197 33 33 0 chr3 18818446 18818476 -140781307 + (TG)n Simple_repeat Simple_repeat 2 32 0 4 728 3335 185 167 111 chr3 18818476 18819005 -140780778 - Lx7 LINE L1 -1214 4666 4189 4 728 2566 61 58 0 chr3 18819005 18819332 -140780451 + ORR1A1 LTR MaLR 1 346 0 4 728 3335 185 167 111 chr3 18819332 18819589 -140780194 - Lx7 LINE L1 -1692 4188 3922 4 728 531 45 0 0 chr3 18819589 18819655 -140780128 + (CTTG)n Simple_repeat Simple_repeat 2 67 0 4 728 571 272 7 7 chr3 18819656 18819793 -140779990 - B1_Mur4 SINE Alu -10 140 4 4 728 3335 185 167 111 chr3 18819793 18819985 -140779798 - Lx7 LINE L1 -1959 3921 3730 4 728 1523 96 4 0 chr3 18819971 18820220 -140779563 - MusHAL1 LINE L1 -2175 537 288 4 728 30721 80 7 10 chr3 18820209 18821224 -140778559 - L1Md_F2 LINE L1 -12 6570 5570 4 728 7105 26 8 0 chr3 18821224 18822064 -140777719 - L1Md_F3 LINE L1 -1 6583 5737 4 728 30721 77 24 1 chr3 18822064 18826202 -140773581 - L1Md_F2 LINE L1 -314 5569 1332 4 728 1648 156 58 8 chr3 18826200 18826582 -140773201 - Lx7 LINE L1 -4102 1778 1378 4 728 4367 191 33 39 chr3 18826659 18827700 -140772083 - RMER12 LTR ERVK -165 1407 1 4 728 748 205 104 29 chr3 18827700 18827819 -140771964 - Lx7 LINE L1 -4491 1386 1272 4 728 375 23 0 0 chr3 18827819 18827863 -140771920 + (TG)n Simple_repeat Simple_repeat 2 45 0 4 728 748 205 124 33 chr3 18827863 18828060 -140771723 - Lx7 LINE L1 -5815 1271 1047 4 728 287 295 83 30 chr3 18830122 18830255 -140769528 + MIRc SINE MIR 20 159 -109 4 728 263 351 14 0 chr3 18830478 18830552 -140769231 + ID SINE ID 3 77 -147 4 728 362 240 47 40 chr3 18830647 18830755 -140769028 - PB1D10 SINE Alu -16 133 17 4 728 893 310 97 21 chr3 18830922 18831261 -140768522 + MLT1A0 LTR MaLR 1 365 0 4 728 252 0 0 0 chr3 18832388 18832416 -140767367 + (A)n Simple_repeat Simple_repeat 1 28 0 4 728 275 266 32 11 chr3 18832566 18832647 -140767136 + (CATATA)n Simple_repeat Simple_repeat 6 88 0 4 728 276 30 0 0 chr3 18832647 18832680 -140767103 + (TG)n Simple_repeat Simple_repeat 2 34 0 4 728 275 266 32 11 chr3 18832680 18832693 -140767090 + (CATATA)n Simple_repeat Simple_repeat 5 17 0 4 728 427 303 85 52 chr3 18834466 18834678 -140765105 - MIR SINE MIR -39 223 5 4 728 21 36 0 0 chr3 18834932 18834960 -140764823 + AT_rich Low_complexity Low_complexity 1 28 0 4 728 239 300 28 101 chr3 18836117 18836295 -140763488 + L2 LINE L2 2426 2590 -829 4 728 653 254 5 107 chr3 18838659 18838875 -140760908 + B3A SINE B2 3 196 -2 4 728 614 289 116 16 chr3 18838880 18839402 -140760381 + L1MB1 LINE L1 5597 6167 -16 4 728 753 324 45 0 chr3 18840089 18840419 -140759364 + MER2 DNA MER2_type 1 345 0 4 728 256 274 235 0 chr3 18842703 18842856 -140756927 + Lx8 LINE L1 7281 7469 -4 4 728 329 323 93 42 chr3 18842863 18843099 -140756684 + L1MEd LINE L1 1007 1254 -4882 4 728 21 0 0 0 chr3 18843665 18843686 -140756097 + AT_rich Low_complexity Low_complexity 1 21 0 4 728 438 20 0 0 chr3 18843931 18843982 -140755801 + (TC)n Simple_repeat Simple_repeat 1 51 0 4 728 216 0 0 0 chr3 18843982 18844005 -140755778 + (CA)n Simple_repeat Simple_repeat 1 24 0 4 728 1127 296 130 12 chr3 18844024 18844802 -140754981 - L1MB7 LINE L1 -56 6128 5259 4 728 228 240 0 0 chr3 18844880 18844930 -140754853 + L1MEd LINE L1 4559 4608 -1538 4 728 28 29 0 0 chr3 18846263 18846298 -140753485 + AT_rich Low_complexity Low_complexity 1 35 0 4 728 275 291 48 57 chr3 18847126 18847250 -140752533 + ORR1E LTR MaLR 220 342 -17 4 728 6115 78 4 0 chr3 18847598 18848391 -140751392 - Lx3_Mus LINE L1 0 7009 6214 4 728 216 0 0 0 chr3 18849518 18849542 -140750241 + (CA)n Simple_repeat Simple_repeat 1 24 0 4 728 718 303 133 24 chr3 18849693 18849987 -140749796 - MER44A DNA MER2_type -7 332 7 4 728 1411 258 101 93 chr3 18850265 18850638 -140749145 - RLTR18 LTR ERVK 0 616 233 4 728 1933 109 10 26 chr3 18850638 18850940 -140748843 + L1_Mus3 LINE L1 6339 6635 -3 4 728 243 0 0 0 chr3 18850947 18850974 -140748809 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 4 728 1411 258 101 93 chr3 18850974 18851195 -140748588 - RLTR18 LTR ERVK -391 225 9 4 728 1209 54 0 0 chr3 18851235 18851382 -140748401 + B1_Mus2 SINE Alu 1 147 0 4 728 218 399 32 51 chr3 18851510 18851666 -140748117 + L2b LINE L2 3020 3172 -203 4 728 2371 86 0 12 chr3 18851817 18852158 -140747625 + L1_Mus4 LINE L1 6298 6634 -2 4 728 372 178 0 0 chr3 18852158 18852231 -140747552 + GA-rich Low_complexity Low_complexity 1 73 0 4 728 290 288 178 0 chr3 18852261 18852334 -140747449 + ID_B1 SINE B4 87 172 -52 4 728 248 350 143 10 chr3 18852334 18852355 -140747428 + B1_Mus2 SINE Alu 6 112 -35 4 728 885 169 73 0 chr3 18852459 18852636 -140747147 + URR1A DNA MER1_type 33 222 -4 4 728 719 249 91 11 chr3 18853448 18853635 -140746148 + B3 SINE B2 9 210 -6 4 728 21 57 0 0 chr3 18853897 18853932 -140745851 + AT_rich Low_complexity Low_complexity 1 35 0 4 728 480 292 58 0 chr3 18854376 18854496 -140745287 - ID_B1 SINE B4 -14 210 84 4 728 28 29 0 0 chr3 18854575 18854610 -140745173 + AT_rich Low_complexity Low_complexity 1 35 0 4 728 1373 233 28 28 chr3 18854642 18855074 -140744709 + L1VL4 LINE L1 301 732 -5570 4 728 17322 201 67 32 chr3 18855062 18860171 -140739612 + Lx5 LINE L1 1338 6620 -430 5 728 434 269 29 147 chr3 18860778 18860948 -140738835 + RLTR18B LTR ERVK 48 197 -315 5 728 873 274 52 93 chr3 18861081 18861463 -140738320 + RLTR18 LTR ERVK 110 616 0 5 728 218 364 179 0 chr3 18861517 18861690 -140738093 - L2a LINE L2 -257 3169 2966 5 728 281 316 25 34 chr3 18862502 18862620 -140737163 - MTE2a LTR MaLR -30 349 233 5 728 194 346 39 29 chr3 18862969 18863073 -140736710 + MIRb SINE MIR 130 234 -34 5 728 361 183 48 0 chr3 18863443 18863547 -140736236 - Lx9 LINE L1 -6 7638 7530 5 728 189 0 0 0 chr3 18863756 18863777 -140736006 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 5 728 363 269 67 0 chr3 18863824 18863928 -140735855 - Lx7 LINE L1 -387 7309 7199 5 728 687 224 5 47 chr3 18864030 18864241 -140735542 - Lx9 LINE L1 -87 7557 7356 5 728 260 232 36 0 chr3 18864292 18864348 -140735435 - RLTR14 LTR ERV1 -324 58 1 5 728 287 309 42 11 chr3 18864944 18865039 -140734744 + RMER20B LTR ERVK 523 620 -7 5 728 28394 59 16 12 chr3 18865214 18866918 -140732865 - L1Md_T LINE L1 -2 6583 4890 5 728 8484 33 0 0 chr3 18866918 18867914 -140731869 + L1Md_T LINE L1 5587 6582 0 5 728 28394 84 20 24 chr3 18867914 18872772 -140727011 - L1Md_T LINE L1 -997 4889 1 5 728 1150 92 81 0 chr3 18872780 18872953 -140726830 - B2_Mm2 SINE B2 -8 187 1 5 728 422 306 304 3 chr3 18873019 18873308 -140726475 - MTE2b LTR MaLR -1 378 3 5 11 12258 94 20 39 chr3 18874147 18877108 -140722675 + L1VL2 LINE L1 75 2983 -632 5 729 31859 78 9 7 chr3 18877242 18882771 -140717012 + L1Md_T LINE L1 98 5585 -298 5 729 8817 17 0 0 chr3 18882772 18883768 -140716015 + L1Md_T LINE L1 5587 6582 0 5 729 4047 85 2 9 chr3 18883769 18884349 -140715434 + L1Md_F2 LINE L1 5011 5586 -297 5 729 7579 64 9 3 chr3 18884350 18885327 -140714456 + L1Md_F2 LINE L1 5588 6570 -12 5 729 233 316 41 0 chr3 18885495 18885593 -140714190 - L2a LINE L2 -27 3399 3298 5 729 646 285 31 148 chr3 18886010 18886237 -140713546 + B4 SINE B4 1 219 -73 5 729 675 239 6 52 chr3 18886237 18886409 -140713374 + RSINE1 SINE B4 2 165 0 5 729 646 285 31 148 chr3 18886409 18886506 -140713277 + B4 SINE B4 220 287 -5 5 729 675 286 40 0 chr3 18886628 18886803 -140712980 + B3A SINE B2 1 182 -16 5 729 245 84 113 0 chr3 18886843 18886914 -140712869 + (TA)n Simple_repeat Simple_repeat 2 80 0 5 729 22 0 0 0 chr3 18887150 18887172 -140712611 + AT_rich Low_complexity Low_complexity 1 22 0 5 729 230 0 0 32 chr3 18887196 18887227 -140712556 + (TC)n Simple_repeat Simple_repeat 1 30 0 5 729 475 288 185 23 chr3 18887525 18887794 -140711989 + L1MC4 LINE L1 6765 7091 -951 5 729 248 91 23 0 chr3 18887794 18887838 -140711945 + (TGGA)n Simple_repeat Simple_repeat 4 48 0 5 729 475 288 185 23 chr3 18887838 18887920 -140711863 + L1MC4 LINE L1 7092 7173 -869 5 729 517 261 21 28 chr3 18888022 18888164 -140711619 + B4A SINE B4 2 142 -150 5 729 304 320 37 37 chr3 18888266 18888428 -140711355 + L1MC4 LINE L1 7341 7502 -540 5 729 1250 49 6 0 chr3 18888499 18888661 -140711122 + (GAAA)n Simple_repeat Simple_repeat 4 166 0 5 729 450 0 0 0 chr3 18888661 18888711 -140711072 + (GGGA)n Simple_repeat Simple_repeat 1 50 0 5 729 357 106 0 0 chr3 18888946 18888993 -140710790 + L1MC4 LINE L1 7856 7902 -140 5 729 234 135 0 0 chr3 18889018 18889055 -140710728 + L1MC4 LINE L1 7998 8034 -8 5 729 993 60 0 0 chr3 18889535 18889668 -140710115 + (GAA)n Simple_repeat Simple_repeat 3 135 0 5 729 248 259 0 17 chr3 18892359 18892418 -140707365 + GA-rich Low_complexity Low_complexity 3 60 0 5 729 699 234 48 6 chr3 18892927 18893095 -140706688 - RMER5 LTR ERV1 -327 207 33 5 729 387 0 0 0 chr3 18893626 18893669 -140706114 + (TG)n Simple_repeat Simple_repeat 2 44 0 5 729 478 309 145 38 chr3 18894451 18894740 -140705043 + MLT1A0 LTR MaLR 24 343 -22 5 729 775 232 14 120 chr3 18894757 18894973 -140704810 + B3A SINE B2 2 194 -1 5 729 933 308 97 23 chr3 18895400 18895959 -140703824 - Lx8 LINE L1 -173 7300 6660 5 729 433 258 133 0 chr3 18895985 18896105 -140703678 + ID_B1 SINE B4 81 216 -8 5 729 202 56 27 27 chr3 18897062 18897099 -140702684 + (TAAAA)n Simple_repeat Simple_repeat 3 39 0 5 729 551 265 43 98 chr3 18897560 18897794 -140701989 + RCHARR1 DNA MER1_type 35 255 -719 5 729 282 257 29 0 chr3 18897779 18897849 -140701934 + RCHARR1 DNA MER1_type 175 246 -728 5 729 2560 221 69 17 chr3 18897912 18898575 -140701208 + RCHARR1 DNA MER1_type 175 872 -102 5 729 939 257 9 33 chr3 18898586 18898799 -140700984 + B3 SINE B2 1 208 -8 5 729 276 308 0 21 chr3 18899797 18899890 -140699893 + GA-rich Low_complexity Low_complexity 4 94 0 5 729 426 39 0 0 chr3 18899897 18899949 -140699834 + (TA)n Simple_repeat Simple_repeat 2 53 0 5 729 197 364 0 0 chr3 18900254 18900309 -140699474 - L2b LINE L2 -20 3355 3301 5 729 349 339 0 0 chr3 18901396 18901514 -140698269 + MER2 DNA MER2_type 109 226 -119 5 729 198 0 0 0 chr3 18901902 18901924 -140697859 + (T)n Simple_repeat Simple_repeat 1 22 0 5 729 478 254 82 83 chr3 18903035 18903239 -140696544 + B3 SINE B2 2 195 0 5 729 497 213 18 6 chr3 18905513 18905683 -140694100 + CT-rich Low_complexity Low_complexity 2 173 0 5 729 292 258 66 47 chr3 18905774 18905880 -140693903 + MTEa LTR MaLR 272 379 0 5 729 343 289 3 0 chr3 18905935 18906024 -140693759 + ID4_ SINE ID 16 105 -47 5 729 625 215 96 7 chr3 18906353 18906489 -140693294 + B1F2 SINE Alu 1 148 -1 5 729 880 255 29 0 chr3 18906606 18906810 -140692973 + B3 SINE B2 5 214 -2 5 729 610 301 0 35 chr3 18908550 18908719 -140691064 - RSINE1 SINE B4 0 165 3 5 729 312 303 101 0 chr3 18909098 18909197 -140690586 + PB1D10 SINE Alu 4 112 -5 5 729 293 298 87 56 chr3 18909237 18909525 -140690258 + L1M4 LINE L1 494 790 -5752 5 729 353 153 40 16 chr3 18909525 18909651 -140690132 + (CA)n Simple_repeat Simple_repeat 1 129 0 5 729 209 234 0 15 chr3 18909671 18909736 -140690047 + (CA)n Simple_repeat Simple_repeat 1 64 0 5 729 592 198 24 15 chr3 18909753 18910092 -140689691 + (CA)n Simple_repeat Simple_repeat 1 341 0 5 729 1004 259 68 56 chr3 18910116 18910615 -140689168 + L1M4 LINE L1 797 1301 -5241 5 729 2547 265 79 25 chr3 18910623 18911392 -140688391 + Lx8 LINE L1 6346 7156 -317 5 729 1910 268 114 16 chr3 18911393 18911973 -140687810 + Lx8 LINE L1 6690 7326 -147 5 729 372 43 0 0 chr3 18912103 18912149 -140687634 + (GTTTG)n Simple_repeat Simple_repeat 2 47 0 5 729 1683 208 62 8 chr3 18912172 18912559 -140687224 + MTD LTR MaLR 12 419 0 5 729 375 172 10 106 chr3 18912767 18912871 -140686912 + MER31B LTR ERV1 373 466 0 5 729 1124 153 10 21 chr3 18912938 18913131 -140686652 + Lx4B LINE L1 6854 7044 -14 5 729 273 57 0 0 chr3 18913131 18913166 -140686617 + (TTAA)n Simple_repeat Simple_repeat 3 37 0 5 729 1182 95 0 0 chr3 18913262 18913409 -140686374 + B1_Mus1 SINE Alu 2 148 0 5 729 23 0 0 0 chr3 18913475 18913498 -140686285 + AT_rich Low_complexity Low_complexity 1 23 0 5 729 261 281 0 0 chr3 18913966 18914048 -140685735 + L1M4 LINE L1 3897 3978 -2666 5 729 386 356 85 22 chr3 18914579 18914803 -140684980 + MLT1D LTR MaLR 268 505 0 5 729 394 329 40 34 chr3 18914824 18915000 -140684783 + MLT1D-int LTR MaLR 19 195 -1294 5 729 377 296 68 62 chr3 18915046 18915208 -140684575 + B4A SINE B4 105 267 -25 5 729 345 82 0 0 chr3 18915217 18915266 -140684517 + (CA)n Simple_repeat Simple_repeat 1 49 0 5 729 345 259 63 78 chr3 18915545 18915750 -140684033 + MLT1D-int LTR MaLR 405 606 -883 5 729 186 103 0 0 chr3 18915803 18915832 -140683951 + (A)n Simple_repeat Simple_repeat 1 29 0 5 729 38473 14 2 11 chr3 18915905 18921134 -140678649 + L1Md_A LINE L1 411 5586 -297 5 729 9336 15 0 1 chr3 18921134 18922131 -140677652 + L1Md_A LINE L1 5587 6582 0 5 729 395 300 230 16 chr3 18922177 18922434 -140677349 + MLT1D-int LTR MaLR 877 1188 -301 5 729 900 249 34 55 chr3 18922433 18922726 -140677057 + RLTR14 LTR ERV1 44 330 -52 5 729 16306 88 3 4 chr3 18922751 18925694 -140674089 + L1_Mus2 LINE L1 3620 6560 -6 5 729 3608 33 5 0 chr3 18926044 18926438 -140673345 + MTA_Mm LTR MaLR 1 396 0 5 729 302 313 45 45 chr3 18926447 18926604 -140673179 + RMER15 LTR ERVL 351 507 -68 5 729 1548 81 5 14 chr3 18926748 18926962 -140672821 + L1Md_F2 LINE L1 6360 6571 -11 5 729 321 47 0 0 chr3 18927006 18927049 -140672734 + (TTTA)n Simple_repeat Simple_repeat 1 43 0 5 729 686 229 0 30 chr3 18927413 18927548 -140672235 + B1_Mur2 SINE Alu 2 132 -17 5 729 3329 48 8 5 chr3 18927960 18928355 -140671428 + MTA_Mm LTR MaLR 1 396 0 5 729 3278 227 40 7 chr3 18928517 18929505 -140670278 + Lx5 LINE L1 5965 7049 -1 5 729 21 0 0 0 chr3 18929506 18929527 -140670256 + AT_rich Low_complexity Low_complexity 1 21 0 5 729 669 276 46 28 chr3 18929782 18929998 -140669785 + Lx8 LINE L1 6894 7113 -360 5 729 341 219 0 0 chr3 18930090 18930154 -140669629 + RMER15 LTR ERVL 403 466 -109 5 729 201 138 0 0 chr3 18930820 18930849 -140668934 + (CA)n Simple_repeat Simple_repeat 1 29 0 5 729 653 223 152 0 chr3 18931529 18931713 -140668070 + B3 SINE B2 3 214 -2 5 729 202 273 0 0 chr3 18933224 18933279 -140666504 + T-rich Low_complexity Low_complexity 4 58 0 5 729 1825 141 0 17 chr3 18933519 18933807 -140665976 - Lx LINE L1 -1 6653 6371 5 729 183 203 0 0 chr3 18933811 18933880 -140665903 + GA-rich Low_complexity Low_complexity 1 69 0 5 729 468 346 51 36 chr3 18934144 18934420 -140665363 - B4A SINE B4 -10 282 3 5 729 1306 232 171 6 chr3 18935158 18935504 -140664279 - MTD LTR MaLR -16 403 1 5 729 518 112 133 0 chr3 18935504 18935602 -140664181 - RCHARR1 DNA MER1_type -388 586 476 5 729 527 62 0 0 chr3 18935604 18935669 -140664114 - L1Md_F3 LINE L1 -547 6037 5973 5 729 4086 25 2 2 chr3 18935669 18936118 -140663665 + L1Md_F3 LINE L1 6134 6582 -2 5 729 1729 273 56 11 chr3 18936118 18936373 -140663410 - RCHARR1 DNA MER1_type -485 489 217 5 729 342 0 0 0 chr3 18936373 18936411 -140663372 + (TC)n Simple_repeat Simple_repeat 1 38 0 5 729 411 21 0 0 chr3 18936411 18936458 -140663325 + (CA)n Simple_repeat Simple_repeat 1 48 0 5 729 1729 273 56 11 chr3 18936458 18936667 -140663116 - RCHARR1 DNA MER1_type -758 216 4 5 729 698 221 15 0 chr3 18936912 18937043 -140662740 + RSINE1 SINE B4 2 134 -31 5 729 29 0 0 0 chr3 18937046 18937075 -140662708 + AT_rich Low_complexity Low_complexity 1 29 0 5 729 340 299 97 7 chr3 18937286 18937441 -140662342 + L1MB1 LINE L1 5781 5949 -219 5 729 682 257 131 0 chr3 18937442 18937625 -140662158 + B3 SINE B2 1 207 -9 5 729 192 40 0 0 chr3 18937631 18937656 -140662127 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 5 729 21 0 0 0 chr3 18937932 18937953 -140661830 + AT_rich Low_complexity Low_complexity 1 21 0 5 729 334 244 0 49 chr3 18938021 18938103 -140661680 + PB1D10 SINE Alu 40 117 0 6 729 507 319 66 28 chr3 18938215 18938428 -140661355 + ID_B1 SINE B4 1 221 -3 6 729 356 288 101 43 chr3 18939448 18939655 -140660128 - L2a LINE L2 -4 3422 3204 6 729 305 271 0 28 chr3 18939702 18939774 -140660009 + B3A SINE B2 1 70 -128 6 729 426 53 0 0 chr3 18939829 18939886 -140659897 + (CA)n Simple_repeat Simple_repeat 1 57 0 6 729 856 181 352 120 chr3 18940951 18941263 -140658520 + ORR1C2 LTR MaLR 1 384 0 6 729 361 147 36 9 chr3 18941405 18941515 -140658268 + (TG)n Simple_repeat Simple_repeat 1 113 0 6 729 487 219 11 17 chr3 18941592 18941773 -140658010 + (TG)n Simple_repeat Simple_repeat 1 180 0 6 729 313 45 23 0 chr3 18941826 18941854 -140657929 + HAL1-3A_ME LINE L1 1979 2007 -851 6 729 327 49 0 0 chr3 18941854 18941895 -140657888 + (TA)n Simple_repeat Simple_repeat 1 41 0 6 729 313 45 23 0 chr3 18941895 18941910 -140657873 + HAL1-3A_ME LINE L1 2008 2022 -836 6 729 620 277 174 43 chr3 18941921 18942174 -140657609 - B4A SINE B4 -6 286 1 6 729 207 0 0 0 chr3 18943534 18943557 -140656226 + (A)n Simple_repeat Simple_repeat 1 23 0 6 729 294 95 0 0 chr3 18943557 18943599 -140656184 + (TAGA)n Simple_repeat Simple_repeat 4 45 0 6 729 202 298 0 17 chr3 18943720 18943778 -140656005 + GA-rich Low_complexity Low_complexity 6 62 0 6 729 1282 49 0 0 chr3 18944037 18944180 -140655603 - B1_Mus1 SINE Alu -5 143 1 6 729 1140 264 66 30 chr3 18944355 18944719 -140655064 - MTE2a LTR MaLR -2 377 1 6 729 413 331 55 0 chr3 18944942 18945069 -140654714 + RSINE1 SINE B4 2 135 -30 6 729 688 215 46 63 chr3 18945263 18945437 -140654346 + B3 SINE B2 46 216 0 6 729 198 103 0 0 chr3 18945456 18945485 -140654298 + (A)n Simple_repeat Simple_repeat 1 29 0 6 729 513 187 75 25 chr3 18945557 18945689 -140654094 - B1_Mur2 SINE Alu -4 146 9 6 729 581 245 36 0 chr3 18945971 18946110 -140653673 + Lx8 LINE L1 6987 7130 -343 6 729 248 256 79 49 chr3 18946134 18946298 -140653485 + Lx8 LINE L1 7301 7469 -4 6 729 429 259 19 81 chr3 18947353 18947513 -140652270 + MLT1E2 LTR MaLR 394 543 -84 6 729 739 282 148 34 chr3 18947679 18948119 -140651664 - L1MC1 LINE L1 -18 6315 5826 6 729 948 210 155 93 chr3 18948229 18948630 -140651153 - MT2B LTR ERVL -55 546 13 6 729 828 146 14 21 chr3 18948906 18949046 -140650737 + B1_Mur2 SINE Alu 11 149 0 6 729 353 262 23 9 chr3 18949319 18949467 -140650316 - L1MC1 LINE L1 -836 5310 5158 6 729 1679 167 14 69 chr3 18949496 18949843 -140649940 - Lx4B LINE L1 -2 7056 6729 6 729 938 259 23 8 chr3 18949842 18950103 -140649680 - L1MC1 LINE L1 -980 5166 4902 6 729 710 280 67 67 chr3 18950529 18950724 -140649059 + B3A SINE B2 1 195 0 6 729 210 71 0 0 chr3 18950747 18950775 -140649008 + (ATG)n Simple_repeat Simple_repeat 2 29 0 6 729 518 246 81 51 chr3 18950789 18950986 -140648797 + B3 SINE B2 11 213 -3 6 729 320 341 112 0 chr3 18951520 18951641 -140648142 - B1F1 SINE Alu -11 138 6 6 729 31 0 0 0 chr3 18951713 18951744 -140648039 + AT_rich Low_complexity Low_complexity 1 31 0 6 729 1132 188 28 14 chr3 18951751 18951962 -140647821 + B3 SINE B2 3 216 0 6 729 7252 58 56 1 chr3 18952262 18953225 -140646558 + L1_Mus2 LINE L1 5551 6566 0 6 729 467 285 142 19 chr3 18955468 18955808 -140643975 - MLT1D LTR MaLR 0 505 87 6 729 351 44 0 0 chr3 18956715 18956760 -140643023 + (GGGA)n Simple_repeat Simple_repeat 3 47 0 6 729 3165 66 43 2 chr3 18957278 18957674 -140642109 - L1_Mus1 LINE L1 0 6567 6156 6 729 3212 99 0 0 chr3 18957674 18958117 -140641666 + L1_Mm LINE L1 4939 5381 -502 6 729 462 293 16 8 chr3 18959414 18959538 -140640245 + PB1 SINE Alu 1 125 -2 6 729 233 29 29 0 chr3 18961263 18961297 -140638486 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 6 729 234 0 0 0 chr3 18961352 18961378 -140638405 + (TG)n Simple_repeat Simple_repeat 2 27 0 6 729 261 0 0 0 chr3 18962100 18962129 -140637654 + (CCA)n Simple_repeat Simple_repeat 2 30 0 6 729 200 56 83 0 chr3 18962293 18962329 -140637454 + (TTTTTA)n Simple_repeat Simple_repeat 2 40 0 6 729 375 275 38 0 chr3 18962621 18962701 -140637082 + RSINE1 SINE B4 82 164 -1 6 729 200 286 0 0 chr3 18962713 18962755 -140637028 + (CA)n Simple_repeat Simple_repeat 2 43 0 6 729 22 0 0 0 chr3 18963258 18963280 -140636503 + AT_rich Low_complexity Low_complexity 1 22 0 6 729 363 181 26 77 chr3 18964008 18964086 -140635697 - tRNA-Ala-GCY_ tRNA tRNA 0 75 2 6 729 301 378 59 5 chr3 18964328 18964530 -140635253 + MLT1J LTR MaLR 124 336 -176 6 729 14816 78 16 5 chr3 18964669 18967393 -140632390 - L1VL2 LINE L1 -626 2989 236 6 729 1674 233 143 94 chr3 18968368 18969111 -140630672 + RLTR40 LTR ERVK 1 779 -38 6 729 263 242 0 0 chr3 18969240 18969302 -140630481 + L1MA5 LINE L1 6208 6269 -31 6 729 1374 244 91 31 chr3 18969319 18969737 -140630046 + Lx9 LINE L1 6138 6580 -1064 6 729 1415 261 66 167 chr3 18969736 18970361 -140629422 + L1_Mus1 LINE L1 217 747 -5891 6 729 1323 34 0 0 chr3 18970361 18970508 -140629275 + B1_Mus2 SINE Alu 1 147 0 6 729 21911 103 175 22 chr3 18970508 18975555 -140624228 + L1_Mus1 LINE L1 726 6567 0 6 729 429 179 47 12 chr3 18975606 18975691 -140624092 - B3 SINE B2 -6 210 123 6 729 15353 152 20 26 chr3 18975691 18977881 -140621902 + Lx LINE L1 3106 5287 -596 6 729 1299 48 0 0 chr3 18977881 18978028 -140621755 + B1_Mus2 SINE Alu 1 147 0 6 729 15353 98 39 16 chr3 18978028 18979369 -140620414 + Lx LINE L1 5288 6654 0 6 729 550 262 24 0 chr3 18979376 18979502 -140620281 - B3 SINE B2 -82 134 6 6 729 33 43 0 0 chr3 18979502 18979549 -140620234 + AT_rich Low_complexity Low_complexity 1 47 0 6 729 189 0 0 0 chr3 18979681 18979702 -140620081 + (TAGG)n Simple_repeat Simple_repeat 4 24 0 6 729 1115 89 6 0 chr3 18979702 18979881 -140619902 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 6 729 1027 255 14 0 chr3 18980497 18980709 -140619074 + B3 SINE B2 2 216 0 6 729 581 278 23 0 chr3 18981436 18981569 -140618214 + B1F SINE Alu 5 140 -9 6 729 403 187 35 22 chr3 18981569 18981666 -140618117 + Lx6 LINE L1 7069 7156 -304 6 729 249 33 0 0 chr3 18981686 18981716 -140618067 + (TG)n Simple_repeat Simple_repeat 1 30 0 6 729 537 76 33 0 chr3 18981759 18981851 -140617932 + (GA)n Simple_repeat Simple_repeat 2 96 0 6 729 537 298 77 6 chr3 18981864 18982046 -140617737 + Lx6 LINE L1 7236 7430 -30 6 729 258 32 0 0 chr3 18982383 18982414 -140617369 + (CA)n Simple_repeat Simple_repeat 2 32 0 6 729 363 44 0 0 chr3 18982414 18982458 -140617325 + (TA)n Simple_repeat Simple_repeat 1 45 0 6 729 244 222 0 22 chr3 18982520 18982566 -140617217 - ID_B1 SINE B4 -7 217 173 6 729 461 104 13 0 chr3 18982603 18982680 -140617103 + (CA)n Simple_repeat Simple_repeat 1 78 0 6 729 268 206 0 42 chr3 18982715 18982786 -140616997 - Lx7 LINE L1 -13 7683 7616 6 729 411 21 0 0 chr3 18982790 18982838 -140616945 + (TC)n Simple_repeat Simple_repeat 1 48 0 6 729 1015 250 88 20 chr3 18982851 18982891 -140616892 - Lx7 LINE L1 -333 7363 7313 6 729 1543 70 16 0 chr3 18982891 18983077 -140616706 + B2_Mm2 SINE B2 2 190 -5 6 729 231 103 0 0 chr3 18983078 18983117 -140616666 + (CA)n Simple_repeat Simple_repeat 2 40 0 6 729 1015 250 88 20 chr3 18983117 18983368 -140616415 - Lx7 LINE L1 -384 7312 7050 6 729 843 308 151 28 chr3 18983374 18983731 -140616052 - MLT1F LTR MaLR -62 486 86 6 729 972 258 69 0 chr3 18984810 18985027 -140614756 + B4A SINE B4 1 232 -60 6 729 905 224 48 29 chr3 18985029 18985236 -140614547 + B3 SINE B2 1 211 -5 6 729 753 139 82 20 chr3 18985284 18985431 -140614352 + MTB_Mm LTR MaLR 1 156 -265 6 729 3142 128 6 4 chr3 18985433 18985919 -140613864 + RLTR1C LTR ERV1 1 487 -16 6 729 1429 200 33 4 chr3 18985919 18986195 -140613588 + MTB_Mm LTR MaLR 124 407 0 6 729 243 0 0 0 chr3 18986275 18986302 -140613481 + (GA)n Simple_repeat Simple_repeat 2 28 0 6 729 184 30 0 57 chr3 18986635 18986670 -140613113 + (GTTTG)n Simple_repeat Simple_repeat 2 34 0 6 729 1202 241 171 0 chr3 18986813 18987141 -140612642 + Lx9 LINE L1 6359 6742 -902 6 729 2528 102 6 0 chr3 18987434 18987759 -140612024 - ORR1A2 LTR MaLR 0 327 1 6 729 7913 148 63 28 chr3 18987759 18989273 -140610510 - ORR1A2-int LTR MaLR 0 1963 396 6 729 1152 104 142 0 chr3 18989265 18989448 -140610335 - ORR1A2 LTR MaLR -114 213 5 6 729 10562 86 11 1 chr3 18989480 18991636 -140608147 + L1_Mus2 LINE L1 4386 6566 0 6 729 1631 247 142 32 chr3 18992170 18992216 -140607567 + Lx9 LINE L1 6958 7003 -641 6 729 381 22 0 0 chr3 18992216 18992262 -140607521 + (CA)n Simple_repeat Simple_repeat 2 47 0 6 729 1631 247 142 32 chr3 18992262 18992710 -140607073 + Lx9 LINE L1 7004 7507 -137 6 729 240 59 0 0 chr3 18992710 18992744 -140607039 + (TG)n Simple_repeat Simple_repeat 1 34 0 6 729 216 0 0 0 chr3 18992744 18992767 -140607016 + (GA)n Simple_repeat Simple_repeat 1 24 0 6 729 1631 247 142 32 chr3 18992767 18992889 -140606894 + Lx9 LINE L1 7508 7642 -2 6 729 228 280 107 0 chr3 18993205 18993280 -140606503 + L3 LINE CR1 4258 4340 -149 6 729 3479 142 31 14 chr3 18993677 18994249 -140605534 + RMER4B LTR ERVK 1 582 -3 6 729 34584 57 18 29 chr3 18994685 19000000 -140599783 + L1Md_F LINE L1 101 5359 -524 6 729 2064 13 0 0 chr3 19000000 19000227 -140599556 + L1Md_A LINE L1 5360 5586 -297 1 729 8740 28 0 0 chr3 19000227 19001223 -140598560 + L1Md_A LINE L1 5587 6582 0 1 729 661 221 78 7 chr3 19001223 19001364 -140598419 + B3 SINE B2 50 200 -16 2 729 438 20 0 0 chr3 19001364 19001415 -140598368 + (TAAA)n Simple_repeat Simple_repeat 3 53 0 3 729 230 336 25 42 chr3 19001767 19001885 -140597898 - RSINE1 SINE B4 -46 119 4 4 729 287 309 0 0 chr3 19002250 19002334 -140597449 - MER58C DNA MER1_type 0 215 132 5 729 343 324 98 47 chr3 19002715 19002990 -140596793 + LTR40c LTR ERVL 173 461 -4 6 729 418 215 21 11 chr3 19003086 19003180 -140596603 + RMER5 LTR ERV1 413 507 -27 7 729 449 275 213 16 chr3 19003253 19003497 -140596286 + B4A SINE B4 1 292 0 8 729 715 101 0 28 chr3 19003502 19003645 -140596138 + (CAGAGA)n Simple_repeat Simple_repeat 6 144 0 9 729 379 306 0 0 chr3 19003646 19003803 -140595980 + (CA)n Simple_repeat Simple_repeat 2 158 0 1 729 366 235 0 0 chr3 19003820 19003969 -140595814 + (CA)n Simple_repeat Simple_repeat 2 150 0 1 729 391 255 75 14 chr3 19004132 19004279 -140595504 + RMER5 LTR ERV1 33 188 -346 1 729 258 246 39 104 chr3 19004594 19004738 -140595045 + Charlie1a DNA MER1_type 1044 1178 -277 1 729 1680 188 82 36 chr3 19004738 19005103 -140594680 + RLTR14 LTR ERV1 1 382 0 1 730 202 266 0 15 chr3 19005604 19005669 -140594114 + (TGG)n Simple_repeat Simple_repeat 1 64 0 1 730 378 0 0 0 chr3 19005673 19005715 -140594068 + (TG)n Simple_repeat Simple_repeat 2 43 0 1 730 242 204 0 0 chr3 19006060 19006104 -140593679 + MER58B DNA MER1_type 220 263 -78 1 730 772 281 36 0 chr3 19006580 19006801 -140592982 + MamRep137 DNA TcMar? 134 362 -82 1 730 3929 164 52 7 chr3 19007533 19008238 -140591545 - RMER19A LTR ERVK 0 737 1 1 730 334 231 81 95 chr3 19008255 19008403 -140591380 + B1F SINE Alu 1 146 -3 1 730 763 194 14 0 chr3 19008588 19008727 -140591056 + B1_Mur1 SINE Alu 1 141 -8 2 730 25 0 0 0 chr3 19008727 19008752 -140591031 + AT_rich Low_complexity Low_complexity 1 25 0 2 730 489 308 44 19 chr3 19008769 19008928 -140590855 - B3A SINE B2 -16 182 20 2 730 21 0 0 0 chr3 19009249 19009270 -140590513 + AT_rich Low_complexity Low_complexity 1 21 0 2 730 5195 133 25 59 chr3 19009362 19010296 -140589487 + RLTR13D6 LTR ERVK 1 902 0 2 730 543 291 8 0 chr3 19011048 19011182 -140588601 - RSINE1 SINE B4 -22 143 9 2 730 5397 116 5 19 chr3 19011465 19012301 -140587482 - MYSERV6-int LTR ERVK -7048 1911 1088 2 730 1523 162 39 29 chr3 19012304 19012616 -140587167 - RLTR46 LTR ERVK -5 315 1 2 730 33365 219 28 8 chr3 19012616 19015230 -140584553 - IAPEY3-int LTR ERVK 0 7680 5020 2 730 3171 58 0 10 chr3 19015230 19015667 -140584116 + L1Md_F2 LINE L1 6171 6582 0 2 730 33365 219 28 8 chr3 19015667 19020051 -140579732 - IAPEY3-int LTR ERVK -2661 5019 536 2 730 481 233 29 122 chr3 19020047 19020252 -140579531 - IAPEY3-int LTR ERVK -7494 186 1 2 730 1525 156 39 29 chr3 19020260 19020571 -140579212 - RLTR46 LTR ERVK -6 314 1 2 730 4319 149 81 41 chr3 19020571 19021624 -140578159 - MYSERV6-int LTR ERVK -7862 1097 3 2 730 249 83 0 0 chr3 19021633 19021669 -140578114 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 3 730 9392 88 25 15 chr3 19021669 19023328 -140576455 - Lx3A LINE L1 -13 6968 5295 3 730 8568 78 22 27 chr3 19023330 19023982 -140575801 + L1_Mur1 LINE L1 4022 4655 -1231 3 730 3266 94 40 19 chr3 19023982 19024458 -140575325 - L1_Mus3 LINE L1 -1 6637 6152 3 730 8568 78 22 27 chr3 19024458 19024540 -140575243 + L1_Mur1 LINE L1 4656 4736 -1150 3 730 212 0 0 35 chr3 19024540 19024569 -140575214 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 3 730 8568 78 22 27 chr3 19024569 19025092 -140574691 + L1_Mur1 LINE L1 4737 5273 -613 3 730 1755 144 128 63 chr3 19025146 19025575 -140574208 - RMER6B LTR ERVK -4 457 1 3 730 208 273 0 0 chr3 19026023 19026078 -140573705 + MER5B DNA MER1_type 102 156 -22 3 730 1058 188 198 62 chr3 19026087 19026455 -140573328 + Lx9 LINE L1 7218 7635 -9 3 730 22 35 0 0 chr3 19026456 19026485 -140573298 + AT_rich Low_complexity Low_complexity 1 29 0 3 730 579 15 0 0 chr3 19026595 19026663 -140573120 + (TG)n Simple_repeat Simple_repeat 2 69 0 3 730 326 176 43 14 chr3 19026666 19026735 -140573048 - B3A SINE B2 -41 157 87 4 730 346 251 175 30 chr3 19026866 19027038 -140572745 + L1_Mm LINE L1 5425 5610 -276 4 730 396 0 0 0 chr3 19027038 19027082 -140572701 + (CA)n Simple_repeat Simple_repeat 1 44 0 4 730 778 199 51 34 chr3 19027123 19027300 -140572483 - MTE2b LTR MaLR -18 361 182 4 730 622 289 123 81 chr3 19027303 19027797 -140571986 - RMER20A LTR ERVK 0 516 2 4 730 715 217 41 18 chr3 19027810 19027979 -140571804 - MTE2b LTR MaLR -204 175 3 4 730 3772 23 5 7 chr3 19028015 19028453 -140571330 + L1Md_F3 LINE L1 6148 6584 0 4 730 227 231 176 0 chr3 19028471 19028529 -140571254 + L1_Mm LINE L1 5722 5784 -516 4 730 342 0 0 0 chr3 19028529 19028567 -140571216 + (CA)n Simple_repeat Simple_repeat 1 38 0 4 730 227 231 176 0 chr3 19028567 19028599 -140571184 + L1_Mm LINE L1 5785 5827 -473 4 730 537 288 41 2 chr3 19028607 19028786 -140570997 + B3A SINE B2 1 185 -31 4 730 3342 205 85 28 chr3 19029191 19030038 -140569745 + Lx2B LINE L1 6083 6977 -23 4 730 1305 59 24 0 chr3 19030054 19030223 -140569560 - L1_Mm LINE L1 -1457 4426 4254 4 730 2970 83 5 0 chr3 19030223 19030618 -140569165 + L1_Mus1 LINE L1 6171 6567 0 5 730 229 247 183 0 chr3 19030770 19030863 -140568920 - L1MC4 LINE L1 -17 8025 7916 5 730 471 295 58 39 chr3 19031050 19031205 -140568578 + RSINE1 SINE B4 2 159 -6 5 730 392 260 146 0 chr3 19031663 19031786 -140567997 + B1F SINE Alu 1 141 -8 5 730 189 0 0 0 chr3 19031854 19031875 -140567908 + (CA)n Simple_repeat Simple_repeat 1 21 0 5 730 616 268 33 0 chr3 19031912 19032065 -140567718 + B3A SINE B2 3 160 -38 5 730 239 0 32 0 chr3 19032070 19032101 -140567682 + (TGGA)n Simple_repeat Simple_repeat 4 35 0 5 730 21 0 0 0 chr3 19032112 19032133 -140567650 + AT_rich Low_complexity Low_complexity 1 21 0 5 730 526 170 131 9 chr3 19035563 19035670 -140564113 - B1_Mur4 SINE Alu -30 120 1 5 730 256 276 67 22 chr3 19035862 19035951 -140563832 + MER58B DNA MER1_type 194 286 -55 5 730 490 176 28 132 chr3 19035996 19036122 -140563661 + RMER1C Other Other 1213 1328 -14 6 730 977 101 7 0 chr3 19036122 19036260 -140563523 + B1_Mus1 SINE Alu 1 139 -9 6 730 220 27 54 0 chr3 19036260 19036297 -140563486 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 6 730 490 176 28 132 chr3 19036297 19036313 -140563470 + RMER1C Other Other 1329 1340 -2 6 730 4302 132 29 35 chr3 19036464 19037225 -140562558 + RMER6A LTR ERVK 1 756 0 6 730 212 264 19 0 chr3 19037516 19037569 -140562214 - B4A SINE B4 -212 80 27 6 730 708 254 30 24 chr3 19038096 19038265 -140561518 + B3 SINE B2 3 172 -44 6 730 343 247 6 1 chr3 19038474 19038559 -140561224 + MTEb LTR MaLR 272 367 -12 6 730 377 328 102 88 chr3 19038559 19039026 -140560757 + L1MEc LINE L1 261 736 -5664 6 730 523 167 165 53 chr3 19039026 19039159 -140560624 + B1_Mus1 SINE Alu 1 148 0 6 730 377 328 102 88 chr3 19039159 19039239 -140560544 + L1MEc LINE L1 737 816 -5584 6 730 369 314 135 37 chr3 19039312 19039749 -140560034 + L1MEc LINE L1 928 1407 -4993 6 730 431 395 0 19 chr3 19040152 19040383 -140559400 + G-rich Low_complexity Low_complexity 1 226 0 6 730 287 246 46 28 chr3 19040580 19040701 -140559082 + PB1D7 SINE Alu 3 120 0 7 730 410 223 144 9 chr3 19040888 19041025 -140558758 + L1MEc LINE L1 3368 3517 -2796 6 730 338 264 149 62 chr3 19041301 19041495 -140558288 + RMER10B LTR ERVL 188 398 0 7 730 3900 93 0 13 chr3 19041568 19041708 -140558075 + L1_Mus4 LINE L1 5355 5490 -393 7 730 2449 52 3 0 chr3 19041708 19042014 -140557769 + L1Md_F2 LINE L1 6276 6582 0 7 730 8132 73 7 6 chr3 19042014 19043159 -140556624 + L1_Mus4 LINE L1 5491 6636 0 7 730 503 255 16 37 chr3 19043238 19043429 -140556354 + L1MEc LINE L1 3525 3711 -2608 6 730 221 61 0 0 chr3 19043446 19043479 -140556304 + B3A SINE B2 1 33 -165 7 730 654 239 67 38 chr3 19043608 19043927 -140555856 + L1MEc LINE L1 5540 5918 -429 6 730 216 0 0 0 chr3 19044526 19044550 -140555233 + (A)n Simple_repeat Simple_repeat 1 24 0 7 730 290 315 86 53 chr3 19044681 19044832 -140554951 + ID_B1 SINE B4 1 156 -68 7 730 1558 49 16 0 chr3 19044940 19045124 -140554659 - B2_Mm2 SINE B2 -6 189 3 7 730 899 152 151 5 chr3 19045174 19045366 -140554417 + ORR1B2 LTR MaLR 3 222 -145 7 730 1135 74 14 0 chr3 19045625 19045773 -140554010 + B1_Mur4 SINE Alu 1 150 0 7 730 690 75 0 0 chr3 19047205 19047298 -140552485 + (TGGG)n Simple_repeat Simple_repeat 4 96 0 8 730 21 36 0 0 chr3 19047692 19047720 -140552063 + AT_rich Low_complexity Low_complexity 1 28 0 8 730 35 24 0 0 chr3 19047779 19047821 -140551962 + AT_rich Low_complexity Low_complexity 1 42 0 8 730 832 219 35 5 chr3 19047847 19048044 -140551739 - B3 SINE B2 -5 211 9 8 730 217 292 53 53 chr3 19048060 19048154 -140551629 - PB1D7 SINE Alu -26 94 1 8 730 253 224 0 33 chr3 19048154 19048205 -140551578 - B1_Mur4 SINE Alu -101 49 1 8 730 282 56 0 0 chr3 19048574 19048610 -140551173 + (CA)n Simple_repeat Simple_repeat 2 37 0 8 730 453 333 7 0 chr3 19048611 19048752 -140551031 + ID_B1 SINE B4 14 155 -69 8 730 532 182 91 0 chr3 19049182 19049292 -140550491 + B1_Mus2 SINE Alu 6 125 -22 8 730 508 254 30 7 chr3 19050030 19050165 -140549618 + B1F SINE Alu 4 141 -8 8 730 3350 188 97 92 chr3 19050439 19051329 -140548454 + RMER1B Other Other 28 921 -145 9 730 449 266 18 9 chr3 19051785 19051895 -140547888 + RSINE1 SINE B4 19 129 -36 9 730 228 67 0 0 chr3 19051935 19051965 -140547818 + (CA)n Simple_repeat Simple_repeat 1 30 0 9 730 671 224 14 7 chr3 19052024 19052172 -140547611 + B1F SINE Alu 1 149 0 9 730 592 162 135 23 chr3 19052474 19052607 -140547176 + B1_Mur1 SINE Alu 2 149 0 9 730 342 217 0 14 chr3 19052703 19052773 -140547010 + B1F2 SINE Alu 1 69 -80 9 730 195 283 96 21 chr3 19053443 19053537 -140546246 + L2 LINE L2 1192 1292 -2127 9 730 263 286 6 0 chr3 19054009 19054085 -140545698 - PB1D10 SINE Alu -57 92 14 9 730 380 250 83 33 chr3 19054235 19054355 -140545428 - B1_Mus2 SINE Alu -19 128 3 9 730 597 243 20 54 chr3 19054480 19054628 -140545155 - B1_Mur1 SINE Alu 0 149 7 9 730 413 325 6 49 chr3 19054694 19054856 -140544927 - RSINE1 SINE B4 -6 159 5 1 730 234 245 0 0 chr3 19054934 19054983 -140544800 - B3 SINE B2 -153 63 15 1 730 2122 177 75 13 chr3 19055157 19055549 -140544234 + RLTR16 LTR ERVK 1 412 -93 1 730 333 0 0 0 chr3 19055549 19055586 -140544197 + (TG)n Simple_repeat Simple_repeat 2 38 0 1 730 2122 177 75 13 chr3 19055586 19055657 -140544126 + RLTR16 LTR ERVK 413 493 -12 1 730 412 281 73 49 chr3 19055937 19056246 -140543537 + L1MB7 LINE L1 5745 6061 -117 1 730 276 232 89 44 chr3 19056276 19056366 -140543417 + PB1D10 SINE Alu 24 117 0 1 730 326 254 63 39 chr3 19056366 19056493 -140543290 + L1MB7 LINE L1 6047 6176 -8 1 730 351 299 85 23 chr3 19056494 19056624 -140543159 + B1F1 SINE Alu 1 138 -11 1 730 1114 72 0 0 chr3 19057014 19057152 -140542631 + B1_Mus1 SINE Alu 1 138 -10 1 730 247 286 57 9 chr3 19058369 19058475 -140541308 + PB1D7 SINE Alu 2 112 -8 1 730 407 297 21 21 chr3 19058649 19058790 -140540993 + RSINE1 SINE B4 25 165 0 1 730 402 21 0 0 chr3 19058819 19058866 -140540917 + (CA)n Simple_repeat Simple_repeat 1 47 0 1 730 261 309 103 0 chr3 19059402 19059499 -140540284 - PB1D10 SINE Alu -7 110 4 1 730 699 228 55 66 chr3 19059692 19059875 -140539908 + B3A SINE B2 1 181 -14 1 730 381 309 91 13 chr3 19060189 19060343 -140539440 + B4 SINE B4 2 167 -125 1 730 627 253 69 69 chr3 19060443 19060732 -140539051 + B4A SINE B4 4 292 0 1 730 792 167 131 6 chr3 19061149 19061324 -140538459 + B3 SINE B2 1 197 -19 1 730 26 0 0 0 chr3 19061325 19061351 -140538432 + AT_rich Low_complexity Low_complexity 1 26 0 1 730 244 0 56 0 chr3 19061501 19061537 -140538246 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 1 730 303 288 117 0 chr3 19061919 19062030 -140537753 - B1_Mur1 SINE Alu -21 128 5 1 730 310 257 43 26 chr3 19062075 19062191 -140537592 - MER5A1 DNA MER1_type -5 161 44 1 730 216 319 0 105 chr3 19064001 19064106 -140535677 + PB1D7 SINE Alu 27 120 0 1 730 180 0 0 0 chr3 19064107 19064127 -140535656 + (GAA)n Simple_repeat Simple_repeat 2 21 0 1 730 1444 71 43 0 chr3 19065294 19065478 -140534305 + B2_Mm2 SINE B2 1 192 -3 1 730 1584 147 251 29 chr3 19065485 19065828 -140533955 - MTC LTR MaLR 0 421 3 1 730 518 279 95 69 chr3 19065838 19065951 -140533832 - L1MA4 LINE L1 -370 5930 5817 1 730 1168 74 0 0 chr3 19065951 19066099 -140533684 + B1_Mus1 SINE Alu 1 148 0 1 730 518 279 95 69 chr3 19066099 19066247 -140533536 - L1MA4 LINE L1 -484 5816 5662 1 730 543 276 202 36 chr3 19066238 19066498 -140533285 - L1M2 LINE L1 -303 5577 5272 1 730 1070 53 46 7 chr3 19066498 19066651 -140533132 - L1Md_F3 LINE L1 0 6584 6426 1 730 601 277 198 36 chr3 19066651 19066977 -140532806 - L1M2 LINE L1 -609 5271 4904 1 730 2532 89 3 0 chr3 19066977 19067303 -140532480 - ORR1A2 LTR MaLR 0 327 1 1 730 1221 212 182 20 chr3 19067653 19068005 -140531778 - MTD LTR MaLR 0 421 13 1 730 4451 220 43 68 chr3 19068020 19069308 -140530475 - MTD-int LTR MaLR 0 1258 2 1 730 1262 204 70 30 chr3 19069309 19069680 -140530103 - MTD LTR MaLR 0 419 3 1 730 218 197 79 32 chr3 19069784 19069847 -140529936 + RSINE1 SINE B4 76 141 -24 1 730 480 100 0 0 chr3 19069889 19069969 -140529814 + (TC)n Simple_repeat Simple_repeat 2 81 0 1 730 261 0 0 0 chr3 19069969 19069998 -140529785 + (CA)n Simple_repeat Simple_repeat 1 29 0 1 730 213 322 0 0 chr3 19070006 19070065 -140529718 + B4A SINE B4 87 145 -147 1 730 437 293 10 0 chr3 19070109 19070208 -140529575 + RSINE1 SINE B4 48 147 -18 1 730 217 254 68 0 chr3 19070255 19070314 -140529469 + ID4 SINE ID 10 72 -11 1 730 327 49 0 0 chr3 19070530 19070571 -140529212 + (GGGA)n Simple_repeat Simple_repeat 2 42 0 1 730 467 198 308 14 chr3 19071060 19071190 -140528593 + B3A SINE B2 1 168 -30 1 730 240 35 0 0 chr3 19071196 19071225 -140528558 + (TTA)n Simple_repeat Simple_repeat 3 31 0 1 730 180 0 0 0 chr3 19071231 19071251 -140528532 + (CAG)n Simple_repeat Simple_repeat 1 20 0 1 730 776 221 0 0 chr3 19071279 19071428 -140528355 + B1_Mur2 SINE Alu 1 149 0 1 730 571 47 47 0 chr3 19071434 19071519 -140528264 + (GAGAA)n Simple_repeat Simple_repeat 4 92 0 1 730 222 69 0 0 chr3 19071520 19071549 -140528234 + (GA)n Simple_repeat Simple_repeat 2 30 0 1 730 627 288 32 16 chr3 19071562 19071749 -140528034 + B3A SINE B2 9 198 0 1 730 520 262 0 41 chr3 19071770 19071917 -140527866 + B1_Mus2 SINE Alu 7 147 0 1 730 1543 284 138 6 chr3 19071954 19072771 -140527012 + Lx8 LINE L1 6336 7260 -213 1 730 2546 97 6 3 chr3 19072848 19073191 -140526592 - ORR1A1 LTR MaLR -2 344 1 1 730 869 192 102 10 chr3 19073194 19073399 -140526384 - URR1A DNA MER1_type -2 224 1 1 730 1290 239 130 42 chr3 19073500 19073976 -140525807 - RLTR18 LTR ERVK -5 611 94 1 730 444 133 0 0 chr3 19073983 19074058 -140525725 - RMER19B LTR ERVK 0 902 828 1 730 283 238 143 0 chr3 19074059 19074143 -140525640 - RLTR18 LTR ERVK -413 99 4 1 730 246 143 0 0 chr3 19074148 19074189 -140525594 - ORR1C2 LTR MaLR -10 374 334 1 730 2132 82 6 59 chr3 19074189 19074485 -140525298 + ORR1A2 LTR MaLR 1 278 -49 1 730 1190 222 82 26 chr3 19074485 19074837 -140524946 - ORR1D1 LTR MaLR 0 374 3 1 730 895 210 84 0 chr3 19074853 19075067 -140524716 + MT2A LTR ERVL 300 531 -2 1 730 264 218 18 0 chr3 19075068 19075123 -140524660 + PB1D10 SINE Alu 40 95 -22 1 730 259 292 73 0 chr3 19075345 19075441 -140524342 + PB1D9 SINE Alu 10 112 -8 1 730 497 229 183 84 chr3 19075447 19075638 -140524145 + B3 SINE B2 1 210 -6 1 730 748 205 111 6 chr3 19075818 19075990 -140523793 - B3 SINE B2 -7 209 20 1 730 1359 181 167 14 chr3 19076138 19076492 -140523291 - MTD LTR MaLR -11 408 1 1 730 201 196 0 0 chr3 19076661 19076717 -140523066 + CT-rich Low_complexity Low_complexity 1 56 0 1 730 456 302 60 56 chr3 19077880 19078203 -140521580 + ORR1E LTR MaLR 9 326 -44 1 730 1020 205 0 26 chr3 19078181 19078376 -140521407 - B3 SINE B2 -25 191 2 1 730 292 297 96 52 chr3 19078952 19079087 -140520696 + ID_B1 SINE B4 81 221 -3 1 730 381 304 122 21 chr3 19079100 19079386 -140520397 + L1MC5 LINE L1 7246 7560 -401 1 730 229 233 55 0 chr3 19079579 19079652 -140520131 + PB1D10 SINE Alu 40 116 -1 1 730 242 285 204 38 chr3 19079795 19079981 -140519802 + ID_B1 SINE B4 8 224 0 1 730 419 302 9 0 chr3 19080092 19080208 -140519575 + RSINE1 SINE B4 4 120 -45 1 730 6319 164 38 8 chr3 19080210 19081381 -140518402 + Lx2B LINE L1 5796 7000 0 1 730 411 21 0 0 chr3 19081446 19081494 -140518289 + (CA)n Simple_repeat Simple_repeat 1 48 0 1 730 22 0 0 0 chr3 19081501 19081523 -140518260 + AT_rich Low_complexity Low_complexity 1 22 0 1 730 791 140 102 7 chr3 19082040 19082177 -140517606 + B1_Mur4 SINE Alu 1 150 0 1 730 465 228 128 96 chr3 19082275 19082556 -140517227 - B4A SINE B4 0 292 3 1 730 1735 143 21 0 chr3 19083201 19083488 -140516295 - ORR1A4 LTR MaLR -35 294 2 1 730 385 315 38 8 chr3 19083937 19084068 -140515715 - MLT1F2 LTR MaLR -103 457 323 1 730 283 265 100 25 chr3 19084368 19084488 -140515295 + B3A SINE B2 1 129 -69 1 730 304 301 8 47 chr3 19084484 19084613 -140515170 + B4A SINE B4 168 291 -1 1 730 958 184 16 26 chr3 19084641 19084831 -140514952 - B2_Mm2 SINE B2 -6 189 2 1 730 392 281 127 32 chr3 19084875 19085033 -140514750 + L1MC3 LINE L1 6653 6825 -960 1 730 342 0 0 0 chr3 19085343 19085381 -140514402 + (CA)n Simple_repeat Simple_repeat 2 39 0 1 730 581 245 148 53 chr3 19085442 19085680 -140514103 + L1MC3 LINE L1 7355 7619 -166 1 730 1806 192 29 53 chr3 19085680 19086097 -140513686 - MTB_Mm LTR MaLR 0 407 1 1 730 581 245 148 53 chr3 19086097 19086216 -140513567 + L1MC3 LINE L1 7620 7746 -39 1 730 1144 75 0 20 chr3 19086250 19086400 -140513383 + B1_Mus1 SINE Alu 2 148 0 1 730 209 33 0 32 chr3 19086407 19086438 -140513345 + (CAAAG)n Simple_repeat Simple_repeat 2 31 0 1 730 186 71 0 0 chr3 19086763 19086791 -140512992 + (CAAAT)n Simple_repeat Simple_repeat 2 29 0 1 730 216 0 0 0 chr3 19087220 19087244 -140512539 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 1 730 228 282 0 13 chr3 19087469 19087548 -140512235 - PB1D10 SINE Alu -37 80 3 1 730 189 0 0 0 chr3 19087885 19087906 -140511877 + (CTAGG)n Simple_repeat Simple_repeat 3 23 0 1 730 365 296 15 15 chr3 19088722 19088859 -140510924 - ID_B1 SINE B4 -4 220 84 1 730 278 232 96 48 chr3 19088915 19089019 -140510764 - B1F SINE Alu 0 149 41 1 730 1662 192 130 16 chr3 19089344 19089768 -140510015 + RMER19B LTR ERVK 1 472 -430 1 730 501 233 36 36 chr3 19089850 19089988 -140509795 - B1_Mur2 SINE Alu -2 147 10 1 730 614 218 166 43 chr3 19090168 19090320 -140509463 + B3 SINE B2 1 176 -40 1 730 219 36 0 0 chr3 19090320 19090348 -140509435 + (TATATG)n Simple_repeat Simple_repeat 3 30 0 1 730 614 218 166 43 chr3 19090348 19090382 -140509401 + B3 SINE B2 177 210 -6 1 730 2334 93 52 82 chr3 19090786 19091252 -140508531 - RLTR11B LTR ERVK 0 453 2 1 730 477 302 39 6 chr3 19091298 19091478 -140508305 + B4A SINE B4 64 249 -43 1 730 1536 187 113 6 chr3 19091481 19091826 -140507957 - Lx9 LINE L1 -685 6959 6578 1 730 508 195 18 92 chr3 19091820 19091942 -140507841 + Lx9 LINE L1 7366 7482 -162 1 730 891 138 21 0 chr3 19091942 19092087 -140507696 - B1_Mus1 SINE Alu 0 148 1 1 730 508 195 18 92 chr3 19092087 19092128 -140507655 + Lx9 LINE L1 7483 7517 -127 1 730 1542 162 241 27 chr3 19092129 19092454 -140507329 - MT2A LTR ERVL 0 533 117 1 730 2259 105 6 24 chr3 19092454 19092787 -140506996 - ORR1A2 LTR MaLR 0 327 1 1 730 1542 162 241 27 chr3 19092787 19092900 -140506883 - MT2A LTR ERVL -417 116 1 1 730 329 243 64 73 chr3 19093206 19093410 -140506373 - L1M5 LINE L1 -2768 3378 3177 1 730 207 133 0 0 chr3 19093418 19093463 -140506320 + (TA)n Simple_repeat Simple_repeat 2 46 0 2 730 342 286 0 0 chr3 19093471 19093555 -140506228 - PB1D10 SINE Alu -33 84 1 2 730 1081 97 14 0 chr3 19093646 19093790 -140505993 - B1_Mus1 SINE Alu -1 147 2 2 730 236 161 0 35 chr3 19093888 19093946 -140505837 + (TATG)n Simple_repeat Simple_repeat 4 59 0 2 730 22 0 0 0 chr3 19093992 19094014 -140505769 + AT_rich Low_complexity Low_complexity 1 22 0 2 730 259 257 95 0 chr3 19094022 19094096 -140505687 - RSINE1 SINE B4 -75 90 10 2 730 221 209 0 0 chr3 19094411 19094454 -140505329 - B1_Mus1 SINE Alu -104 44 2 2 730 213 39 0 0 chr3 19095425 19095451 -140504332 + (TTTTG)n Simple_repeat Simple_repeat 3 28 0 2 730 250 318 47 0 chr3 19095451 19095558 -140504225 - B1F SINE Alu -12 137 26 2 730 571 206 101 78 chr3 19095631 19095810 -140503973 - B3 SINE B2 -7 209 27 2 730 325 276 123 9 chr3 19095804 19095910 -140503873 + ID_B1 SINE B4 100 217 -7 2 730 1345 53 30 51 chr3 19096288 19096485 -140503298 + B2_Mm2 SINE B2 1 193 -2 2 730 420 240 9 28 chr3 19096748 19096855 -140502928 - B1_Mur1 SINE Alu -2 147 43 2 730 307 151 0 0 chr3 19097237 19097290 -140502493 - ID_B1 SINE B4 -4 220 168 2 730 586 97 11 11 chr3 19097290 19097384 -140502399 + B1_Mur1 SINE Alu 19 112 -37 2 730 210 105 0 0 chr3 19097386 19097424 -140502359 + (T)n Simple_repeat Simple_repeat 1 38 0 2 730 616 226 51 19 chr3 19097459 19097617 -140502166 + RLTR28B LTR ERVL 9 171 -310 2 730 378 233 68 0 chr3 19097630 19097733 -140502050 - ID_B1 SINE B4 -20 204 95 2 730 467 281 41 51 chr3 19097971 19098166 -140501617 + B3A SINE B2 2 194 -4 2 730 261 164 0 0 chr3 19098227 19098300 -140501483 + (TA)n Simple_repeat Simple_repeat 2 74 0 2 730 324 319 81 94 chr3 19098300 19098449 -140501334 + B4 SINE B4 128 274 -18 2 730 548 231 74 51 chr3 19098486 19098779 -140501004 + L1MC1 LINE L1 5709 6019 -325 2 730 531 148 18 73 chr3 19098781 19098890 -140500893 + B1_Mus1 SINE Alu 40 142 -6 2 730 221 244 122 49 chr3 19098928 19099010 -140500773 - PB1D10 SINE Alu -12 105 18 2 730 1128 62 21 0 chr3 19099330 19099475 -140500308 - B1_Mus1 SINE Alu 0 148 1 2 730 465 256 52 8 chr3 19099711 19099845 -140499938 - B1_Mur2 SINE Alu 0 149 10 2 730 33 0 0 0 chr3 19100457 19100490 -140499293 + AT_rich Low_complexity Low_complexity 1 33 0 2 730 735 188 14 7 chr3 19100579 19100724 -140499059 - B1_Mus1 SINE Alu 0 148 3 2 730 447 241 18 71 chr3 19100724 19100747 -140499036 - ID_B1 SINE B4 0 222 64 2 730 25 0 0 0 chr3 19100751 19100776 -140499007 + AT_rich Low_complexity Low_complexity 1 25 0 2 730 265 264 31 0 chr3 19100776 19100852 -140498931 - B1F SINE Alu -16 133 55 2 730 371 231 87 0 chr3 19101152 19101256 -140498527 - RSINE1 SINE B4 -48 117 5 2 730 314 269 13 0 chr3 19101278 19101356 -140498427 - ID4_ SINE ID -4 79 1 2 730 432 266 30 45 chr3 19101387 19101521 -140498262 - RSINE1 SINE B4 0 165 34 2 730 311 266 136 30 chr3 19102113 19102245 -140497538 - B1_Mur2 SINE Alu -2 147 2 2 730 859 221 9 46 chr3 19102272 19102490 -140497293 - B3 SINE B2 -5 211 2 2 730 1659 42 0 0 chr3 19102741 19102934 -140496849 - B2_Mm1a SINE B2 0 193 1 2 730 379 187 36 10 chr3 19102934 19103020 -140496763 - PB1D10 SINE Alu -11 106 17 2 730 235 373 91 26 chr3 19106025 19106179 -140493604 + RSINE1 SINE B4 2 165 0 2 730 373 274 75 0 chr3 19107015 19107121 -140492662 + RSINE1 SINE B4 37 150 -15 2 730 324 0 0 0 chr3 19107126 19107162 -140492621 + (CA)n Simple_repeat Simple_repeat 1 36 0 2 730 283 258 74 19 chr3 19107318 19107427 -140492356 + B1F1 SINE Alu 10 117 0 2 730 426 128 16 81 chr3 19108998 19109111 -140490672 - B1_Mur4 SINE Alu 0 150 9 2 730 569 231 163 11 chr3 19109134 19109318 -140490465 - B3 SINE B2 -2 214 3 2 730 294 298 72 63 chr3 19109347 19109458 -140490325 - RSINE1 SINE B4 0 165 54 2 730 234 330 68 0 chr3 19109547 19109650 -140490133 - PB1D9 SINE Alu -6 114 5 2 730 315 252 26 70 chr3 19110090 19110205 -140489578 - BC1_Mm scRNA scRNA -42 110 1 2 730 418 292 95 7 chr3 19110562 19110754 -140489029 - MTEb LTR MaLR -33 346 142 2 730 450 252 17 25 chr3 19110767 19110885 -140488898 - B1_Mur1 SINE Alu 0 149 33 2 730 304 269 64 0 chr3 19111127 19111205 -140488578 - ID4_ SINE ID 0 83 1 2 730 21 0 0 0 chr3 19111682 19111703 -140488080 + AT_rich Low_complexity Low_complexity 1 21 0 2 730 1364 168 58 29 chr3 19112029 19112305 -140487478 - MTC LTR MaLR -84 337 54 2 730 1302 133 14 14 chr3 19112287 19112508 -140487275 + URR1B DNA MER1_type 5 225 0 2 730 404 154 39 0 chr3 19112511 19112589 -140487194 - MTC LTR MaLR -340 81 1 2 730 684 304 65 0 chr3 19112943 19113190 -140486593 - B4 SINE B4 -18 274 12 2 730 548 316 13 44 chr3 19113193 19113418 -140486365 - ID_B1 SINE B4 -5 219 2 2 730 1867 152 121 13 chr3 19113725 19114112 -140485671 - BGLII_B LTR ERVK -12 429 1 2 730 192 40 0 0 chr3 19115253 19115278 -140484505 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 2 730 480 260 32 0 chr3 19116722 19116845 -140482938 - B1F2 SINE Alu -6 143 17 2 730 200 184 0 0 chr3 19117214 19117252 -140482531 + C-rich Low_complexity Low_complexity 5 42 0 2 730 476 178 136 23 chr3 19117634 19117766 -140482017 - B1_Mus2 SINE Alu 0 147 1 2 730 401 309 41 0 chr3 19117803 19117926 -140481857 - RSINE1 SINE B4 -27 138 11 2 730 358 291 37 7 chr3 19118449 19118584 -140481199 - ID_B1 SINE B4 -2 222 84 2 730 2257 124 90 8 chr3 19119783 19120172 -140479611 - MTC LTR MaLR 0 421 1 2 730 21 36 0 0 chr3 19120754 19120782 -140479001 + AT_rich Low_complexity Low_complexity 1 28 0 2 730 1366 72 44 0 chr3 19120917 19121098 -140478685 - B2_Mm1t SINE B2 -3 190 2 2 730 1039 81 55 55 chr3 19121105 19121287 -140478496 - B2_Mm2 SINE B2 -7 188 7 2 730 219 219 0 45 chr3 19122726 19122793 -140476990 - BC1_Mm scRNA scRNA -87 65 2 2 730 237 324 68 62 chr3 19122858 19123019 -140476764 + MLT1A0 LTR MaLR 69 230 -135 2 730 22 0 0 0 chr3 19123120 19123142 -140476641 + AT_rich Low_complexity Low_complexity 1 22 0 2 730 1093 69 28 0 chr3 19124128 19124272 -140475511 + B1_Mus1 SINE Alu 1 148 0 2 730 244 281 67 0 chr3 19125024 19125113 -140474670 + MamRep605 Unknown Unknown 459 553 -323 2 730 494 169 0 31 chr3 19125304 19125402 -140474381 + MER33 DNA MER1_type 27 121 -203 2 730 286 172 133 0 chr3 19125623 19125708 -140474075 + B1_Mus2 SINE Alu 10 108 -41 2 730 231 269 26 0 chr3 19126606 19126684 -140473099 + (CA)n Simple_repeat Simple_repeat 2 81 0 2 730 27 29 0 0 chr3 19128206 19128240 -140471543 + AT_rich Low_complexity Low_complexity 1 34 0 2 730 444 180 143 9 chr3 19128269 19128381 -140471402 - RSINE1 SINE B4 -37 128 2 2 730 233 254 84 0 chr3 19128402 19128473 -140471310 - ID_B1 SINE B4 -48 176 100 2 730 485 229 161 12 chr3 19128517 19128685 -140471098 - B3A SINE B2 -2 196 4 2 730 578 282 71 10 chr3 19131596 19131793 -140467990 + B3 SINE B2 1 209 -7 2 730 313 260 65 52 chr3 19131971 19132125 -140467658 + RSINE1 SINE B4 4 159 -6 2 730 441 255 0 0 chr3 19132693 19132791 -140466992 - B3 SINE B2 -118 98 1 2 730 1058 50 50 0 chr3 19132829 19132969 -140466814 - B1_Mus2 SINE Alu 0 147 1 2 730 724 256 26 48 chr3 19133431 19133620 -140466163 - B4 SINE B4 -10 282 98 2 730 2095 171 129 81 chr3 19134343 19135209 -140464574 + RLTR13D6 LTR ERVK 1 855 -47 2 730 481 86 43 72 chr3 19135216 19135354 -140464429 + CT-rich Low_complexity Low_complexity 2 135 0 2 730 384 280 10 10 chr3 19135441 19135542 -140464241 - B1F SINE Alu -48 101 1 2 731 21 36 0 0 chr3 19137879 19137907 -140461876 + AT_rich Low_complexity Low_complexity 1 28 0 2 731 291 254 232 58 chr3 19137950 19138088 -140461695 - RSINE1 SINE B4 -1 164 3 2 731 659 231 13 39 chr3 19138343 19138496 -140461287 + B1_Mur2 SINE Alu 1 149 0 2 731 584 208 23 17 chr3 19138503 19138859 -140460924 + GA-rich Low_complexity Low_complexity 1 357 0 2 731 203 138 0 0 chr3 19139815 19139844 -140459939 + (GAAA)n Simple_repeat Simple_repeat 3 31 0 2 731 397 307 19 56 chr3 19140132 19140294 -140459489 + RSINE1 SINE B4 1 156 -9 2 731 314 280 52 8 chr3 19141352 19141471 -140458312 - B1F1 SINE Alu 0 120 1 2 731 537 157 19 19 chr3 19141900 19142004 -140457779 - PB1D9 SINE Alu 0 120 17 2 731 226 229 13 114 chr3 19141934 19142013 -140457770 - MT2B LTR ERVL -360 241 171 2 731 838 198 58 5 chr3 19143316 19143504 -140456279 - B3 SINE B2 -6 210 13 2 731 498 17 0 0 chr3 19143720 19143779 -140456004 + (CA)n Simple_repeat Simple_repeat 2 60 0 2 731 312 172 0 0 chr3 19143901 19143959 -140455824 + (TA)n Simple_repeat Simple_repeat 1 58 0 2 731 223 213 13 13 chr3 19144307 19144383 -140455400 + CT-rich Low_complexity Low_complexity 3 78 0 2 731 562 141 12 0 chr3 19144584 19144669 -140455114 - Lx7 LINE L1 -774 6922 6837 2 731 210 37 0 0 chr3 19145032 19145059 -140454724 + (TCTG)n Simple_repeat Simple_repeat 2 28 0 3 731 186 43 0 0 chr3 19146027 19146050 -140453733 + (TTC)n Simple_repeat Simple_repeat 2 24 0 3 731 1254 41 0 0 chr3 19146051 19146198 -140453585 - B1_Mus2 SINE Alu 0 147 1 3 731 235 275 121 10 chr3 19146431 19146555 -140453228 + MIRc SINE MIR 10 143 -125 3 731 1094 46 0 0 chr3 19146690 19146820 -140452963 + B1_Mus2 SINE Alu 2 131 -16 3 731 369 43 0 0 chr3 19146826 19146873 -140452910 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 3 731 22 35 0 0 chr3 19146876 19146905 -140452878 + AT_rich Low_complexity Low_complexity 1 29 0 3 731 636 195 0 8 chr3 19147247 19147371 -140452412 - B1_Mur3 SINE Alu -9 140 18 3 731 570 290 39 0 chr3 19147789 19147944 -140451839 - RSINE1 SINE B4 -2 163 3 3 731 442 204 88 39 chr3 19148042 19148144 -140451639 - RSINE1 SINE B4 -54 111 5 3 731 3546 18 0 0 chr3 19148317 19148774 -140451009 - L1Md_F2 LINE L1 -597 5985 5529 3 731 5032 42 5 0 chr3 19148774 19149376 -140450407 + L1Md_F2 LINE L1 5978 6582 0 3 731 974 168 164 0 chr3 19149924 19150132 -140449651 + RLTR11A2 LTR ERVK 1 242 -285 3 731 5133 153 83 5 chr3 19150132 19151155 -140448628 - RLTR25A LTR ERVK 0 1103 1 3 731 533 203 14 21 chr3 19151155 19151292 -140448491 + RLTR11A2 LTR ERVK 220 355 -98 3 731 351 0 0 0 chr3 19151342 19151381 -140448402 + (TG)n Simple_repeat Simple_repeat 1 39 0 3 731 468 294 123 0 chr3 19151525 19151712 -140448071 - B4A SINE B4 -74 218 9 3 731 22 56 0 0 chr3 19151894 19151930 -140447853 + AT_rich Low_complexity Low_complexity 1 36 0 3 731 932 55 0 8 chr3 19152122 19152251 -140447532 - B2_Mm2 SINE B2 -67 128 1 3 731 535 279 20 7 chr3 19152387 19152523 -140447260 - ID_B1 SINE B4 -76 216 82 3 731 379 212 59 0 chr3 19152577 19152662 -140447121 - B1F SINE Alu -59 90 1 3 731 1820 80 46 0 chr3 19153956 19154219 -140445564 + ORR1A3 LTR MaLR 1 275 -51 3 731 24 91 0 0 chr3 19154258 19154324 -140445459 + AT_rich Low_complexity Low_complexity 1 66 0 3 731 201 74 0 0 chr3 19154657 19154684 -140445099 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 3 731 285 241 36 12 chr3 19154905 19154989 -140444794 - L1MEg LINE L1 -2255 3891 3806 3 731 269 309 43 7 chr3 19155386 19155526 -140444257 - L1MEg LINE L1 -4819 1423 1279 3 731 248 322 11 0 chr3 19155624 19155714 -140444069 + LTR40c LTR ERVL 38 128 -337 3 731 670 260 43 19 chr3 19156330 19156538 -140443245 + ID_B1 SINE B4 4 216 -8 3 731 197 355 32 0 chr3 19157545 19157638 -140442145 - MIRc SINE MIR -120 148 53 3 731 373 346 117 14 chr3 19157950 19158344 -140441439 - L2a LINE L2 -202 3224 2788 3 731 201 74 0 0 chr3 19158964 19158991 -140440792 + (CATA)n Simple_repeat Simple_repeat 2 28 0 3 731 1427 175 85 12 chr3 19159113 19159590 -140440193 + RLTR12A LTR ERVK 36 568 0 3 731 1286 96 6 17 chr3 19159903 19160084 -140439699 + B2_Mm1t SINE B2 1 179 -14 3 731 363 125 0 0 chr3 19160131 19160187 -140439596 + B2_Mm2 SINE B2 47 102 -93 3 731 249 170 0 70 chr3 19161064 19161121 -140438662 + B1F2 SINE Alu 1 53 -96 3 731 214 372 21 21 chr3 19161148 19161288 -140438495 + L2a LINE L2 3284 3423 -3 3 731 577 257 27 34 chr3 19161511 19161660 -140438123 + RSINE1 SINE B4 7 154 -11 3 731 234 0 0 0 chr3 19161661 19161687 -140438096 + (CA)n Simple_repeat Simple_repeat 1 26 0 3 731 643 215 50 43 chr3 19161701 19161842 -140437941 - B1_Mur1 SINE Alu -6 143 2 3 731 306 0 0 0 chr3 19161846 19161880 -140437903 + (TG)n Simple_repeat Simple_repeat 2 35 0 3 731 730 239 129 26 chr3 19162291 19162523 -140437260 - B4 SINE B4 -9 283 28 3 731 180 286 81 10 chr3 19163808 19163907 -140435876 - MIR SINE MIR -38 224 119 3 731 338 143 16 0 chr3 19166208 19166271 -140433512 + GA-rich Low_complexity Low_complexity 1 64 0 3 731 183 403 0 0 chr3 19167509 19167576 -140432207 - L2c LINE L2 -30 3357 3291 3 731 231 36 0 0 chr3 19168568 19168596 -140431187 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 3 731 382 260 135 24 chr3 19168607 19168733 -140431050 + RSINE1 SINE B4 11 150 -15 3 731 292 194 0 82 chr3 19168747 19168820 -140430963 - URR1B DNA MER1_type -48 177 111 3 731 6900 108 25 2 chr3 19169729 19170735 -140429048 + Lx LINE L1 5626 6654 0 3 731 280 280 122 28 chr3 19170896 19171109 -140428674 + L1M5 LINE L1 5677 5909 -331 3 731 978 172 53 24 chr3 19172158 19172367 -140427416 - MTC LTR MaLR 0 421 207 3 731 858 173 123 50 chr3 19172351 19172570 -140427213 - MT2B LTR ERVL -366 235 1 3 731 610 273 71 28 chr3 19172606 19172817 -140426966 + ID_B1 SINE B4 2 221 -3 3 731 314 67 0 0 chr3 19173835 19173880 -140425903 + ORR1B2 LTR MaLR 1 45 -339 3 731 571 125 52 0 chr3 19173880 19173976 -140425807 + IAPEY3_LTR LTR ERVK 1 101 -231 3 731 3557 70 0 16 chr3 19174156 19174606 -140425177 + MMERVK10C-int LTR ERVK 5203 5645 -1936 3 731 10869 117 26 28 chr3 19174594 19176461 -140423322 + MMERVK10C-int LTR ERVK 5761 7338 -342 3 731 1729 126 86 0 chr3 19176461 19176762 -140423021 + IAPEY3_LTR LTR ERVK 1 327 -5 3 731 1692 146 14 27 chr3 19176780 19177075 -140422708 + ORR1B2 LTR MaLR 35 325 -42 3 731 887 220 53 34 chr3 19177072 19177279 -140422504 + B3 SINE B2 6 216 0 3 731 299 109 0 127 chr3 19177299 19177362 -140422421 + ORR1C2 LTR MaLR 330 384 0 3 731 5434 81 28 30 chr3 19177404 19178290 -140421493 - Lx4A LINE L1 -1057 6001 5099 3 731 6142 144 23 15 chr3 19178290 19179089 -140420694 + Lx4A LINE L1 6007 6816 -242 3 731 1979 114 32 81 chr3 19179089 19179433 -140420350 - ORR1A2 LTR MaLR 0 327 1 3 731 6142 144 23 15 chr3 19179433 19179676 -140420107 + Lx4A LINE L1 6817 7057 -1 3 731 228 228 35 0 chr3 19179825 19179882 -140419901 + L1MB4 LINE L1 6007 6065 -115 3 731 1183 55 0 7 chr3 19179923 19180070 -140419713 + B1_Mus2 SINE Alu 2 147 0 3 731 276 318 0 76 chr3 19180328 19180420 -140419363 - RSINE1 SINE B4 -2 163 79 3 731 276 77 0 0 chr3 19181021 19181060 -140418723 + (CA)n Simple_repeat Simple_repeat 2 40 0 3 731 636 269 95 39 chr3 19181063 19181566 -140418217 + L1_Mur3 LINE L1 2541 3107 -2740 3 731 1401 264 98 47 chr3 19181603 19182221 -140417562 + RLTR18B LTR ERVK 4 613 -3 3 731 1822 269 179 17 chr3 19182234 19183348 -140416435 + L1_Mur3 LINE L1 3135 4429 -1451 3 731 386 293 63 0 chr3 19183389 19183563 -140416220 + L1M2 LINE L1 4635 4819 -1324 3 731 368 265 19 56 chr3 19183716 19183824 -140415959 - RMER15 LTR ERVL -109 466 363 3 731 2409 281 61 32 chr3 19183824 19184628 -140415155 - Lx8 LINE L1 -256 7217 6391 3 731 536 307 15 31 chr3 19184922 19185117 -140414666 - B3A SINE B2 -6 192 1 3 731 377 299 13 0 chr3 19185146 19185300 -140414483 + L1MB7 LINE L1 6027 6182 -2 3 731 482 297 47 86 chr3 19185492 19185875 -140413908 - L1M4 LINE L1 -1203 4943 4576 3 731 1404 270 76 39 chr3 19186031 19186433 -140413350 - L1M4 LINE L1 -1779 4367 3963 3 731 1606 170 134 18 chr3 19186433 19186768 -140413015 + ORR1D1 LTR MaLR 1 374 0 3 731 1404 271 77 39 chr3 19186768 19186964 -140412819 - L1M4 LINE L1 -2184 3962 3753 3 731 963 221 54 5 chr3 19186964 19187169 -140412614 - B3 SINE B2 -1 215 1 3 731 870 292 119 46 chr3 19187169 19187281 -140412502 - L1M4 LINE L1 -2381 3759 3599 3 731 391 78 31 0 chr3 19187617 19187681 -140412102 + (TCCA)n Simple_repeat Simple_repeat 4 69 0 3 731 404 19 19 0 chr3 19187698 19187751 -140412032 + (TATG)n Simple_repeat Simple_repeat 2 55 0 3 731 1170 78 0 0 chr3 19187751 19187930 -140411853 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 3 731 215 283 17 0 chr3 19187938 19187998 -140411785 - RSINE1 SINE B4 -93 72 12 3 731 314 384 68 0 chr3 19188102 19188279 -140411504 + MER63A DNA AcHobo 5 193 -17 3 731 279 0 0 0 chr3 19188587 19188618 -140411165 + (TG)n Simple_repeat Simple_repeat 2 32 0 3 731 219 219 0 0 chr3 19189303 19189344 -140410439 + (TG)n Simple_repeat Simple_repeat 1 41 0 3 731 572 210 69 48 chr3 19189784 19189929 -140409854 + B1_Mur2 SINE Alu 1 148 -1 3 731 469 96 24 24 chr3 19189929 19190014 -140409769 + (GAAA)n Simple_repeat Simple_repeat 1 85 0 3 731 828 211 29 0 chr3 19190094 19190269 -140409514 + ID_B1 SINE B4 43 222 -2 3 731 257 255 61 0 chr3 19191676 19191774 -140408009 + HAL1b LINE L1 1893 1996 -13 3 731 535 254 166 0 chr3 19192238 19192419 -140407364 - B3 SINE B2 -5 211 1 3 731 753 183 49 7 chr3 19193059 19193202 -140406581 + B1_Mur2 SINE Alu 1 149 0 3 731 4782 35 0 16 chr3 19193929 19194503 -140405280 - L1Md_F2 LINE L1 0 6582 6018 3 731 1153 48 21 0 chr3 19195224 19195369 -140404414 + B1_Mus1 SINE Alu 1 148 0 3 731 189 0 0 0 chr3 19195369 19195390 -140404393 + (A)n Simple_repeat Simple_repeat 1 21 0 3 731 1964 263 135 12 chr3 19195826 19196546 -140403237 + Lx9 LINE L1 6364 7171 -473 3 731 795 21 0 0 chr3 19196565 19196658 -140403125 + (CCA)n Simple_repeat Simple_repeat 2 94 0 3 731 2375 190 27 2 chr3 19196772 19197258 -140402525 + RLTR16 LTR ERVK 1 498 -7 3 731 235 294 0 0 chr3 19197699 19197750 -140402033 + PB1D9 SINE Alu 1 51 -69 3 731 295 309 0 0 chr3 19197960 19198044 -140401739 + BC1_Mm scRNA scRNA 3 86 -66 3 731 591 317 6 18 chr3 19198132 19198299 -140401484 + RSINE1 SINE B4 1 165 0 3 731 246 32 0 0 chr3 19198345 19198376 -140401407 + (CA)n Simple_repeat Simple_repeat 1 31 0 3 731 1023 37 0 7 chr3 19198376 19198511 -140401272 + B1_Mm SINE Alu 14 147 0 3 731 530 271 49 33 chr3 19198618 19198801 -140400982 + B3 SINE B2 3 188 -28 3 731 304 235 0 29 chr3 19199245 19199262 -140400521 + ID SINE ID 68 82 -142 3 731 293 271 129 0 chr3 19199262 19199347 -140400436 + B1F1 SINE Alu 2 97 -52 3 731 3803 74 26 0 chr3 19199515 19200015 -140399768 - L1_Mus1 LINE L1 0 6567 6055 3 731 501 265 45 32 chr3 19200020 19200176 -140399607 - RSINE1 SINE B4 -4 161 4 3 731 468 111 0 0 chr3 19200303 19200375 -140399408 + (TG)n Simple_repeat Simple_repeat 1 72 0 3 731 308 292 68 23 chr3 19200375 19200508 -140399275 - B3A SINE B2 -44 154 16 4 731 2006 155 88 0 chr3 19200847 19201209 -140398574 - ORR1B1 LTR MaLR 0 394 1 4 731 742 247 24 0 chr3 19201257 19201427 -140398356 - B3 SINE B2 -42 174 1 4 731 306 201 13 94 chr3 19201457 19201620 -140398163 + PB1D9 SINE Alu 1 136 -13 4 731 273 241 62 12 chr3 19201916 19201996 -140397787 + MTEb LTR MaLR 294 377 -2 4 731 804 117 35 0 chr3 19202063 19202208 -140397575 - Lx3C LINE L1 -1 6975 6826 4 731 30 0 0 0 chr3 19202296 19202326 -140397457 + AT_rich Low_complexity Low_complexity 1 30 0 4 731 445 313 71 12 chr3 19202464 19202632 -140397151 - ID_B1 SINE B4 -1 223 46 4 731 319 218 13 0 chr3 19203063 19203141 -140396642 + ID4 SINE ID 1 79 -4 4 731 1151 68 0 0 chr3 19204950 19205096 -140394687 + B1_Mus2 SINE Alu 2 147 0 4 731 469 279 33 0 chr3 19206737 19206859 -140392924 + ID_B1 SINE B4 93 218 -6 4 731 1162 207 170 12 chr3 19207164 19207487 -140392296 - MTD LTR MaLR -14 405 32 4 731 180 0 0 0 chr3 19208173 19208193 -140391590 + (TG)n Simple_repeat Simple_repeat 1 20 0 4 731 447 19 0 0 chr3 19208193 19208244 -140391539 + (GA)n Simple_repeat Simple_repeat 1 52 0 4 731 249 333 42 0 chr3 19208255 19208351 -140391432 - RSINE1 SINE B4 -22 143 44 4 731 232 239 155 0 chr3 19209928 19209999 -140389784 + B1F SINE Alu 13 94 -55 4 731 246 62 0 0 chr3 19210035 19210067 -140389716 + (TGGA)n Simple_repeat Simple_repeat 4 35 0 4 731 23 0 0 0 chr3 19210277 19210300 -140389483 + AT_rich Low_complexity Low_complexity 1 23 0 4 731 39 38 0 0 chr3 19211067 19211120 -140388663 + GC_rich Low_complexity Low_complexity 1 53 0 4 731 29 0 0 0 chr3 19211436 19211465 -140388318 + GC_rich Low_complexity Low_complexity 1 29 0 4 731 228 35 0 0 chr3 19211514 19211543 -140388240 + (CCGCG)n Simple_repeat Simple_repeat 3 31 0 4 731 204 40 0 0 chr3 19212244 19212269 -140387514 + (CCCCCA)n Simple_repeat Simple_repeat 2 26 0 4 731 439 294 7 40 chr3 19212783 19212932 -140386851 + B1F1 SINE Alu 4 147 -2 4 731 576 282 177 29 chr3 19213292 19213686 -140386097 - MLT2C2 LTR ERVL -8 456 1 4 731 299 288 29 43 chr3 19214021 19214159 -140385624 - LTR33C LTR ERVL -19 610 475 4 731 496 325 144 30 chr3 19214692 19215121 -140384662 - ERVL-E-int LTR ERVL -78 5589 5112 4 731 279 260 27 14 chr3 19215273 19215347 -140384436 - ERVL-E-int LTR ERVL -783 4884 4810 4 731 1212 253 58 55 chr3 19215562 19215926 -140383857 + Lx8 LINE L1 7047 7411 -62 4 731 191 32 65 0 chr3 19216046 19216077 -140383706 + (CACCC)n Simple_repeat Simple_repeat 3 35 0 4 731 21 0 0 0 chr3 19216821 19216842 -140382941 + AT_rich Low_complexity Low_complexity 1 21 0 4 731 690 240 7 14 chr3 19216986 19217134 -140382649 + RSINE1 SINE B4 2 148 -17 4 731 386 262 19 10 chr3 19218839 19218943 -140380840 + PB1D10 SINE Alu 1 105 -12 4 731 434 234 37 0 chr3 19219020 19219127 -140380656 + PB1D10 SINE Alu 5 115 -2 4 731 1388 283 67 42 chr3 19219236 19219804 -140379979 + L1MB4 LINE L1 5417 5998 -182 4 731 342 250 83 38 chr3 19219806 19219939 -140379844 - MLT1A1 LTR MaLR 0 408 270 4 731 508 311 0 24 chr3 19220183 19220351 -140379432 + L1MB3 LINE L1 5990 6153 -30 4 731 653 235 17 67 chr3 19220789 19220967 -140378816 - B3 SINE B2 0 216 48 4 731 231 125 0 0 chr3 19220981 19221021 -140378762 + (T)n Simple_repeat Simple_repeat 1 40 0 4 731 1081 65 0 19 chr3 19221033 19221189 -140378594 - L1Md_F2 LINE L1 -3 6579 6427 4 731 258 136 0 0 chr3 19221501 19221545 -140378238 + (TG)n Simple_repeat Simple_repeat 1 44 0 4 731 535 290 23 58 chr3 19221545 19221717 -140378066 - B3A SINE B2 -13 203 38 4 731 1265 41 0 0 chr3 19221926 19222072 -140377711 - B1_Mus2 SINE Alu -1 146 1 4 731 1085 259 91 14 chr3 19224105 19224469 -140375314 - L1MA4 LINE L1 -354 5946 5555 4 731 671 282 41 16 chr3 19224468 19224782 -140375001 + L1M2 LINE L1 5016 5337 -806 4 731 210 71 0 0 chr3 19224792 19224820 -140374963 + (T)n Simple_repeat Simple_repeat 1 28 0 4 731 1134 109 0 0 chr3 19224822 19224969 -140374814 - B1_Mus1 SINE Alu 0 148 2 4 731 242 272 21 32 chr3 19225038 19225133 -140374650 + L1M2 LINE L1 5417 5510 -790 4 731 186 133 0 0 chr3 19225152 19225182 -140374601 + (TTTC)n Simple_repeat Simple_repeat 2 31 0 4 731 696 77 0 0 chr3 19225183 19225274 -140374509 - B1_Mm SINE Alu -56 91 1 4 731 2314 293 76 71 chr3 19225277 19225702 -140374081 - L1MA4 LINE L1 -2361 3782 3320 4 731 1024 93 161 0 chr3 19225702 19225863 -140373920 + B2_Mm2 SINE B2 1 187 -8 4 731 2314 293 76 71 chr3 19225863 19226464 -140373319 - L1MA4 LINE L1 -2824 3319 2744 4 731 1316 104 11 5 chr3 19226464 19226648 -140373135 + B2_Mm1a SINE B2 2 186 -7 4 731 2314 293 76 71 chr3 19226648 19226738 -140373045 - L1MA4 LINE L1 -3400 2743 2656 4 731 225 0 0 0 chr3 19226738 19226763 -140373020 + (TC)n Simple_repeat Simple_repeat 2 26 0 4 731 297 0 0 0 chr3 19226763 19226795 -140372988 + (TA)n Simple_repeat Simple_repeat 2 34 0 4 731 2314 293 76 71 chr3 19226795 19227012 -140372771 - L1MA4 LINE L1 -3488 2655 2459 4 731 216 0 0 0 chr3 19227012 19227036 -140372747 + (TA)n Simple_repeat Simple_repeat 1 24 0 4 731 2314 293 76 71 chr3 19227036 19227324 -140372459 - L1MA4 LINE L1 -3685 2458 2150 4 731 538 268 83 15 chr3 19227930 19228106 -140371677 - B3 SINE B2 -10 206 23 4 731 808 196 132 32 chr3 19228114 19228304 -140371479 - B3 SINE B2 -6 210 2 4 731 188 105 33 50 chr3 19228315 19228375 -140371408 + T-rich Low_complexity Low_complexity 4 62 0 4 731 1083 106 43 12 chr3 19228416 19228579 -140371204 - B2_Mm2 SINE B2 -25 170 3 4 731 3268 82 49 5 chr3 19228631 19229059 -140370724 + Lx3_Mus LINE L1 6563 7009 0 4 731 25 0 0 0 chr3 19229059 19229084 -140370699 + AT_rich Low_complexity Low_complexity 1 25 0 4 731 360 0 0 0 chr3 19229118 19229158 -140370625 + (TA)n Simple_repeat Simple_repeat 2 41 0 4 731 1191 78 0 0 chr3 19229161 19229303 -140370480 - B1_Mus1 SINE Alu -5 143 2 4 731 1936 181 37 42 chr3 19229351 19229731 -140370052 + ORR1C1 LTR MaLR 1 378 0 4 731 423 0 0 0 chr3 19230248 19230295 -140369488 + (TC)n Simple_repeat Simple_repeat 2 48 0 4 731 208 367 0 0 chr3 19230625 19230715 -140369068 + A-rich Low_complexity Low_complexity 4 93 0 4 731 754 312 22 9 chr3 19230773 19230999 -140368784 + 7SK RNA RNA 2 230 -101 4 731 851 248 0 0 chr3 19231024 19231181 -140368602 + RSINE1 SINE B4 3 159 -6 4 731 323 202 0 12 chr3 19231285 19231365 -140368418 + GA-rich Low_complexity Low_complexity 3 81 0 4 731 545 221 55 8 chr3 19231538 19231666 -140368117 - B1_Mur2 SINE Alu -5 144 11 4 731 513 0 0 0 chr3 19232404 19232461 -140367322 + (CA)n Simple_repeat Simple_repeat 2 58 0 4 731 403 285 70 111 chr3 19232771 19233125 -140366658 - RLTR17 LTR ERVK -265 427 126 4 731 507 264 159 13 chr3 19233156 19233313 -140366470 - B3 SINE B2 -5 211 32 4 731 737 234 20 60 chr3 19233344 19233544 -140366239 - B4 SINE B4 -100 192 1 4 731 285 319 14 0 chr3 19234662 19234734 -140365049 - MTE-int LTR MaLR -42 1538 1466 4 731 491 282 8 21 chr3 19234801 19234947 -140364836 + MTEa LTR MaLR 236 379 0 4 731 328 267 12 0 chr3 19234947 19235033 -140364750 + L1MC LINE L1 5583 5669 -664 4 731 1026 245 5 24 chr3 19235162 19235375 -140364408 + B3 SINE B2 2 210 -6 4 731 305 260 105 9 chr3 19236111 19236216 -140363567 - PB1 SINE Alu -4 123 9 4 731 23 0 0 0 chr3 19236284 19236307 -140363476 + AT_rich Low_complexity Low_complexity 1 23 0 4 731 331 218 57 11 chr3 19236425 19236513 -140363270 - Charlie1 DNA MER1_type -242 2539 2448 4 731 697 292 76 8 chr3 19236556 19236818 -140362965 - Charlie1 DNA MER1_type -772 2009 1730 4 731 627 139 0 0 chr3 19237080 19237209 -140362574 + (CAGAGA)n Simple_repeat Simple_repeat 2 130 0 4 731 717 247 58 21 chr3 19237456 19237646 -140362137 - B3 SINE B2 0 216 20 4 731 431 354 100 60 chr3 19238014 19238483 -140361300 + MTE-int LTR MaLR 2 489 -1091 4 731 1034 53 0 8 chr3 19238496 19238630 -140361153 - B1_Mus1 SINE Alu 0 148 16 4 731 254 318 154 83 chr3 19238821 19239216 -140360567 + MTE-int LTR MaLR 738 1160 -420 4 731 219 167 47 125 chr3 19239238 19239430 -140360353 + (AGTAG)n Simple_repeat Simple_repeat 4 180 0 4 731 1387 214 283 57 chr3 19239636 19240020 -140359763 - Lx7 LINE L1 -22 7674 7206 4 731 315 0 0 0 chr3 19240020 19240055 -140359728 + (TTTA)n Simple_repeat Simple_repeat 1 35 0 4 731 1387 189 106 36 chr3 19240055 19240181 -140359602 - Lx7 LINE L1 -491 7205 7068 4 731 1610 227 152 28 chr3 19240179 19240863 -140358920 - L1MC LINE L1 -978 5168 4400 4 731 279 0 0 0 chr3 19240931 19240962 -140358821 + (TC)n Simple_repeat Simple_repeat 2 32 0 4 731 288 0 0 0 chr3 19240962 19240993 -140358790 + (TA)n Simple_repeat Simple_repeat 1 32 0 4 731 681 277 28 6 chr3 19240999 19241177 -140358606 - B3A SINE B2 -16 182 1 4 731 222 333 99 15 chr3 19241248 19241379 -140358404 + MIRb SINE MIR 28 169 -99 4 731 1359 32 0 4 chr3 19241653 19241833 -140357950 - L1Md_F2 LINE L1 -702 5882 5708 4 731 5023 113 0 6 chr3 19241833 19242529 -140357254 + L1Md_F2 LINE L1 5881 6572 -10 4 731 26 0 0 0 chr3 19242529 19242555 -140357228 + AT_rich Low_complexity Low_complexity 1 26 0 4 731 334 282 115 71 chr3 19243110 19243293 -140356490 - B3A SINE B2 -7 191 1 4 731 2331 174 34 38 chr3 19243312 19243755 -140356028 - Lx4A LINE L1 0 7058 6618 4 731 1057 130 0 0 chr3 19243883 19244029 -140355754 + B1_Mus1 SINE Alu 1 146 -2 4 731 202 216 0 0 chr3 19244032 19244069 -140355714 + GA-rich Low_complexity Low_complexity 2 38 0 4 731 456 276 52 0 chr3 19244454 19244588 -140355195 - MIRb SINE MIR -40 228 88 4 731 573 15 0 0 chr3 19245050 19245116 -140354667 + (TC)n Simple_repeat Simple_repeat 1 66 0 4 731 580 237 115 29 chr3 19245117 19245256 -140354527 - B3A SINE B2 -47 151 1 4 731 3157 205 20 20 chr3 19245271 19245475 -140354308 - Lx5 LINE L1 -4 7046 6834 4 731 192 97 0 0 chr3 19245475 19245506 -140354277 + (TGG)n Simple_repeat Simple_repeat 3 33 0 5 731 3157 205 20 20 chr3 19245506 19245897 -140353886 - Lx5 LINE L1 -217 6833 6452 4 731 662 55 11 0 chr3 19245913 19246004 -140353779 + (TCTA)n Simple_repeat Simple_repeat 2 93 0 5 731 1144 213 195 25 chr3 19246623 19246946 -140352837 + MTEa LTR MaLR 2 379 0 5 731 204 40 0 0 chr3 19248137 19248162 -140351621 + (TTC)n Simple_repeat Simple_repeat 2 26 0 5 731 970 62 3 6 chr3 19248164 19248297 -140351486 - B1_Mus2 SINE Alu 0 147 18 5 731 261 179 143 0 chr3 19248601 19248657 -140351126 + ID4 SINE ID 18 81 -2 5 731 272 219 12 0 chr3 19248740 19248822 -140350961 + (TA)n Simple_repeat Simple_repeat 2 84 0 5 731 267 31 0 0 chr3 19248842 19248874 -140350909 + (TAAA)n Simple_repeat Simple_repeat 4 35 0 5 731 211 305 0 33 chr3 19249458 19249519 -140350264 + B4A SINE B4 84 142 -150 5 731 392 323 0 0 chr3 19249466 19249562 -140350221 + PB1D10 SINE Alu 7 102 -15 5 731 378 0 0 0 chr3 19249568 19249610 -140350173 + (CAA)n Simple_repeat Simple_repeat 2 43 0 5 731 648 276 7 0 chr3 19249778 19249923 -140349860 - B1_Mus2 SINE Alu 0 147 2 5 731 380 354 68 20 chr3 19250498 19250749 -140349034 + Arthur1B DNA Tip100 19 281 -944 5 731 315 276 0 50 chr3 19250789 19250869 -140348914 - MER2B DNA MER2_type -64 272 197 5 731 914 352 80 33 chr3 19251084 19251851 -140347932 + Arthur1B DNA Tip100 308 1110 -115 5 731 228 86 0 0 chr3 19251859 19251894 -140347889 + (TG)n Simple_repeat Simple_repeat 1 35 0 5 731 219 36 0 0 chr3 19251894 19251921 -140347862 + (GA)n Simple_repeat Simple_repeat 1 28 0 5 731 543 328 94 43 chr3 19251926 19252115 -140347668 - B4A SINE B4 0 292 85 5 731 2350 50 7 4 chr3 19252115 19252395 -140347388 - L1_Mus2 LINE L1 -2 6564 6284 5 731 543 328 94 43 chr3 19252395 19252482 -140347301 - B4A SINE B4 -208 84 2 5 731 617 197 207 6 chr3 19252741 19252920 -140346863 + B3 SINE B2 2 216 0 5 731 548 239 80 0 chr3 19253167 19253305 -140346478 - B1F2 SINE Alu 0 149 1 5 731 330 26 0 0 chr3 19254107 19254146 -140345637 + (TG)n Simple_repeat Simple_repeat 1 39 0 5 731 663 306 61 5 chr3 19254166 19254363 -140345420 + B4A SINE B4 5 212 -80 5 731 361 40 0 39 chr3 19254477 19254529 -140345254 + HAL1-3A_ME LINE L1 1976 2025 -833 5 731 677 241 53 79 chr3 19255017 19255206 -140344577 - ID_B1 SINE B4 -7 217 34 5 731 277 241 11 11 chr3 19255224 19255312 -140344471 + (TATATG)n Simple_repeat Simple_repeat 3 90 0 5 731 21 57 0 0 chr3 19255372 19255407 -140344376 + AT_rich Low_complexity Low_complexity 1 35 0 5 731 297 208 72 10 chr3 19255782 19255879 -140343904 + L1M4 LINE L1 5592 5694 -490 5 731 18809 70 15 0 chr3 19255878 19259342 -140340441 + L1Md_F LINE L1 98 3525 -2358 5 731 650 13 0 0 chr3 19259342 19259419 -140340364 + L1Md_T LINE L1 6506 6582 0 5 731 486 284 148 56 chr3 19259502 19259773 -140340010 + L1MB8 LINE L1 5807 6114 -64 5 731 621 206 41 28 chr3 19259773 19259918 -140339865 - B1_Mus2 SINE Alu 0 147 1 5 731 486 284 148 56 chr3 19259918 19259985 -140339798 + L1MB8 LINE L1 6115 6176 -2 5 731 393 254 190 22 chr3 19259996 19260133 -140339650 + RSINE1 SINE B4 5 164 -1 5 731 1405 293 72 3 chr3 19260664 19261054 -140338729 - MER21B LTR ERV1 -371 492 76 5 731 1135 252 74 19 chr3 19261595 19261906 -140337877 + MTE2a LTR MaLR 1 328 -51 5 731 6430 75 5 16 chr3 19261906 19262884 -140336899 - L1_Mus1 LINE L1 0 6567 5718 5 731 16866 105 17 7 chr3 19262880 19266063 -140333720 - L1Md_F LINE L1 -2265 3618 404 5 731 258 231 0 0 chr3 19266064 19266116 -140333667 + MTE2a LTR MaLR 324 375 -4 5 731 857 295 89 17 chr3 19266267 19266676 -140333107 + L1MB3 LINE L1 5726 6157 -26 5 731 424 340 19 0 chr3 19267066 19267225 -140332558 + MER5A1 DNA MER1_type 1 162 -4 5 91 262 262 39 62 chr3 19267525 19267655 -140332128 - Lx8 LINE L1 -1 7472 7346 5 732 387 41 0 0 chr3 19268426 19268475 -140331308 + (TG)n Simple_repeat Simple_repeat 1 49 0 5 732 315 280 0 85 chr3 19268477 19268559 -140331224 - RSINE1 SINE B4 -6 159 85 5 732 351 232 60 2 chr3 19268603 19268686 -140331097 - RSINE1 SINE B4 -202 90 4 5 732 295 292 29 14 chr3 19268713 19268852 -140330931 + L1M4 LINE L1 5532 5672 -502 5 732 286 299 99 126 chr3 19268978 19269338 -140330445 - MTEa LTR MaLR 0 379 20 5 732 1899 236 48 36 chr3 19270201 19270591 -140329192 - Lx8 LINE L1 -162 7311 6914 5 732 2156 199 47 10 chr3 19270591 19270997 -140328786 - MTC LTR MaLR 0 421 1 5 732 1899 236 48 36 chr3 19270997 19271111 -140328672 - Lx8 LINE L1 -560 6913 6801 5 732 925 294 20 30 chr3 19271175 19271440 -140328343 + B4A SINE B4 1 265 -27 5 732 180 0 0 0 chr3 19271440 19271460 -140328323 + (TG)n Simple_repeat Simple_repeat 2 21 0 5 732 925 294 20 30 chr3 19271460 19271489 -140328294 + B4A SINE B4 266 292 0 5 732 1182 95 0 0 chr3 19272119 19272266 -140327517 + B1_Mus1 SINE Alu 2 148 0 5 732 255 54 17 67 chr3 19272269 19272329 -140327454 + (CAAAAA)n Simple_repeat Simple_repeat 4 60 0 5 732 2823 78 67 5 chr3 19272852 19273225 -140326558 + MTA_Mm LTR MaLR 1 396 0 5 732 2257 101 3 3 chr3 19273331 19273650 -140326133 - ORR1A2 LTR MaLR -8 319 1 5 732 378 0 0 0 chr3 19274097 19274139 -140325644 + (TA)n Simple_repeat Simple_repeat 2 43 0 5 732 2079 208 39 61 chr3 19274150 19274798 -140324985 + L1VL4 LINE L1 67 874 -5484 5 732 1474 117 117 4 chr3 19274803 19274859 -140324924 + BGLII LTR ERVK 127 207 -214 5 732 1037 72 7 0 chr3 19274859 19275011 -140324772 + (GA)n Simple_repeat Simple_repeat 1 153 0 5 732 1474 117 117 4 chr3 19275011 19275219 -140324564 + BGLII LTR ERVK 208 421 0 5 732 621 178 105 31 chr3 19275573 19275718 -140324065 + RMER3D-int LTR ERVK 432 584 -2258 5 732 1210 73 11 11 chr3 19275718 19275897 -140323886 + (GGAAA)n Simple_repeat Simple_repeat 2 180 0 5 732 621 178 105 31 chr3 19275897 19275942 -140323841 + RMER3D-int LTR ERVK 585 635 -2207 5 732 2052 179 107 17 chr3 19275940 19276415 -140323368 + RMER3D-int LTR ERVK 1016 1533 -1309 5 732 680 161 43 55 chr3 19276447 19276611 -140323172 + RMER3D-int LTR ERVK 1532 1693 -1149 5 732 3732 198 44 42 chr3 19276580 19277530 -140322253 + RMER3D-int LTR ERVK 1891 2842 0 5 732 1491 85 52 28 chr3 19277532 19277805 -140321978 + BGLII LTR ERVK 3 259 -162 5 732 1386 120 19 98 chr3 19277792 19278107 -140321676 + BGLII LTR ERVK 132 421 0 5 732 16836 157 12 4 chr3 19278107 19281382 -140318401 + L1Md_F LINE L1 1189 4490 -1396 5 732 356 323 102 8 chr3 19281401 19281529 -140318254 - MER20 DNA MER1_type -1 218 79 5 732 269 369 71 34 chr3 19281596 19281865 -140317918 - MTEa LTR MaLR -1 358 80 5 732 404 319 207 42 chr3 19281942 19282348 -140317435 + MLT1D LTR MaLR 23 495 -10 5 732 478 287 59 14 chr3 19282417 19282636 -140317147 + L1M4 LINE L1 5366 5594 -584 5 732 301 256 25 25 chr3 19282768 19282888 -140316895 + L1M4 LINE L1 5651 5770 -408 5 732 249 436 18 6 chr3 19284257 19284421 -140315362 - MT2A LTR ERVL -73 460 295 5 732 648 217 0 37 chr3 19284481 19284615 -140315168 + MTD LTR MaLR 7 135 -286 5 732 1552 223 239 0 chr3 19284619 19285041 -140314742 + RMER15 LTR ERVL 3 525 -50 5 732 1388 195 62 4 chr3 19285078 19285335 -140314448 + MTD LTR MaLR 134 405 -14 5 732 411 297 136 51 chr3 19285405 19285678 -140314105 + RMER10B LTR ERVL 103 398 0 5 732 347 219 0 0 chr3 19285690 19285763 -140314020 + MTD-int LTR MaLR 1 73 -1185 5 732 1915 230 119 67 chr3 19286393 19287394 -140312389 + MTD-int LTR MaLR 79 1256 -2 5 732 1847 210 18 25 chr3 19287396 19287791 -140311992 + MTD LTR MaLR 1 392 -27 5 732 420 262 48 32 chr3 19287921 19288047 -140311736 - MTEa LTR MaLR -251 128 1 5 732 180 252 320 10 chr3 19288190 19288290 -140311493 - L2 LINE L2 -1547 1872 1742 5 732 243 0 0 0 chr3 19288363 19288390 -140311393 + (CA)n Simple_repeat Simple_repeat 1 27 0 5 732 1119 64 0 0 chr3 19288979 19289119 -140310664 + B1_Mus1 SINE Alu 2 141 -7 5 732 287 0 53 0 chr3 19289120 19289158 -140310625 + (CAAA)n Simple_repeat Simple_repeat 1 40 0 5 732 294 143 0 0 chr3 19289455 19289504 -140310279 + (CATAT)n Simple_repeat Simple_repeat 2 50 0 5 732 676 172 278 0 chr3 19289922 19290091 -140309692 - B3 SINE B2 0 216 1 5 732 301 255 20 16 chr3 19290247 19290356 -140309427 + PB1D9 SINE Alu 35 147 -2 5 732 348 331 83 12 chr3 19291044 19291212 -140308571 + LTR33 LTR ERVL 324 503 -12 5 732 1089 259 38 17 chr3 19291854 19292200 -140307583 + RMER15 LTR ERVL 221 573 -2 5 732 42 82 0 0 chr3 19292272 19292370 -140307413 + AT_rich Low_complexity Low_complexity 1 98 0 5 732 13187 86 13 10 chr3 19292868 19295718 -140304065 - L1VL2 LINE L1 -632 2983 124 5 732 718 284 34 34 chr3 19295797 19296005 -140303778 - B3 SINE B2 -8 208 1 5 732 401 371 20 5 chr3 19296018 19296213 -140303570 - HAL1 LINE L1 -892 1615 1418 5 732 254 221 29 0 chr3 19297392 19297460 -140302323 - L1M7 LINE L1 -6065 153 84 5 732 334 279 0 12 chr3 19297655 19297735 -140302048 - ID4 SINE ID -3 80 2 5 732 2585 52 153 0 chr3 19298469 19298816 -140300967 + MTB LTR MaLR 1 400 0 5 732 255 248 115 14 chr3 19298926 19299071 -140300712 - L1M4b LINE L1 -1220 5786 5629 5 732 24 32 0 0 chr3 19299336 19299367 -140300416 + AT_rich Low_complexity Low_complexity 1 31 0 5 732 748 236 43 48 chr3 19299396 19299583 -140300200 - B3 SINE B2 -30 186 1 5 732 757 174 83 0 chr3 19299691 19299823 -140299960 + B1_Mur4 SINE Alu 2 144 -6 5 732 199 50 75 0 chr3 19299842 19299882 -140299901 + (CAAA)n Simple_repeat Simple_repeat 1 43 0 5 732 273 273 33 33 chr3 19299969 19300060 -140299723 - B1_Mur1 SINE Alu 0 149 59 5 732 798 291 102 31 chr3 19300207 19300778 -140299005 - L1M4b LINE L1 -2096 4910 4300 5 732 337 292 18 0 chr3 19300780 19300893 -140298890 - B1F2 SINE Alu -1 148 34 5 732 460 273 98 19 chr3 19300910 19301175 -140298608 - L1M4b LINE L1 -2704 4302 4017 5 732 440 313 82 7 chr3 19301206 19301341 -140298442 - RSINE1 SINE B4 -15 150 6 5 732 671 275 226 29 chr3 19301347 19302098 -140297685 - L1M4b LINE L1 -4859 2475 1511 5 732 477 266 40 59 chr3 19302098 19302250 -140297533 - B1_Mur1 SINE Alu 0 149 1 5 732 671 275 226 29 chr3 19302250 19302686 -140297097 - L1M4b LINE L1 -5824 1510 1054 5 732 414 39 0 0 chr3 19302790 19302842 -140296941 + (TG)n Simple_repeat Simple_repeat 1 52 0 5 732 837 216 114 0 chr3 19302890 19303066 -140296717 - B4 SINE B4 -87 205 10 5 732 898 308 176 54 chr3 19303084 19303778 -140296005 - L1M4b LINE L1 -6425 909 126 5 732 495 73 0 0 chr3 19303778 19303846 -140295937 + (CATA)n Simple_repeat Simple_repeat 1 68 0 5 732 898 308 176 54 chr3 19303846 19303928 -140295855 - L1M4b LINE L1 -7209 125 39 5 732 386 287 78 35 chr3 19304213 19304354 -140295429 - RSINE1 SINE B4 -17 148 2 5 732 270 290 137 20 chr3 19304720 19304822 -140294961 - B1F SINE Alu -35 114 1 5 732 24 0 0 0 chr3 19305669 19305693 -140294090 + AT_rich Low_complexity Low_complexity 1 24 0 5 732 773 235 55 5 chr3 19307213 19307414 -140292369 - B3 SINE B2 -1 215 5 5 732 229 270 81 0 chr3 19307451 19307525 -140292258 - ID4 SINE ID -3 80 1 5 732 231 278 85 85 chr3 19307920 19308097 -140291686 + MamGypLTR1b LTR Gypsy 606 782 0 6 732 495 0 0 0 chr3 19308137 19308192 -140291591 + (GA)n Simple_repeat Simple_repeat 1 55 0 6 732 444 318 65 37 chr3 19308509 19308858 -140290925 - MLT1B LTR MaLR -106 361 18 6 732 1357 72 22 0 chr3 19309126 19309306 -140290477 + B2_Mm2 SINE B2 3 186 -9 6 732 334 219 8 34 chr3 19309733 19309851 -140289932 + MYSERV16_I-int LTR ERVK 1071 1185 -1141 6 732 6167 73 31 1 chr3 19309978 19310810 -140288973 - L1_Mus3 LINE L1 -7 6631 5775 6 732 2785 187 72 24 chr3 19312353 19312935 -140286848 + RMER19B LTR ERVK 217 826 -76 6 732 293 178 80 15 chr3 19314066 19314203 -140285580 + (TGAG)n Simple_repeat Simple_repeat 2 147 0 6 732 360 0 0 0 chr3 19314327 19314367 -140285416 + (GA)n Simple_repeat Simple_repeat 1 40 0 6 732 502 97 0 0 chr3 19314515 19314587 -140285196 + RMER19B LTR ERVK 819 890 -12 6 732 217 196 53 18 chr3 19314607 19314658 -140285125 + CT-rich Low_complexity Low_complexity 7 60 0 6 732 748 127 17 8 chr3 19314658 19314777 -140285006 - PB1D9 SINE Alu 0 120 1 6 732 528 93 0 0 chr3 19314783 19314858 -140284925 + (CAAT)n Simple_repeat Simple_repeat 2 76 0 6 732 3836 186 51 31 chr3 19314865 19315836 -140283947 - Lx6 LINE L1 -941 6519 5531 6 732 477 0 0 0 chr3 19316132 19316185 -140283598 + (CA)n Simple_repeat Simple_repeat 2 54 0 6 732 312 337 0 56 chr3 19316739 19316846 -140282937 - RMER15 LTR ERVL -104 471 371 6 732 1693 306 44 24 chr3 19316853 19317560 -140282223 - Lx8 LINE L1 -247 7226 6506 6 732 4036 130 83 44 chr3 19317802 19318169 -140281614 - RMER17D2 LTR ERVK 0 809 453 6 732 423 0 0 0 chr3 19318169 19318216 -140281567 + (GA)n Simple_repeat Simple_repeat 2 48 0 6 732 4036 130 83 44 chr3 19318216 19318626 -140281157 - RMER17D2 LTR ERVK -357 452 1 6 732 2846 89 8 2 chr3 19319084 19319477 -140280306 + L1_Mus4 LINE L1 6241 6635 -1 6 732 207 0 0 0 chr3 19319788 19319811 -140279972 + (T)n Simple_repeat Simple_repeat 1 23 0 6 732 1660 139 16 120 chr3 19320178 19320545 -140279238 + ORR1A4 LTR MaLR 1 329 0 6 732 229 319 134 0 chr3 19321274 19321393 -140278390 + ORR1E LTR MaLR 1 135 -224 6 732 279 340 53 40 chr3 19321824 19321974 -140277809 + MIRb SINE MIR 8 159 -109 6 732 597 276 91 5 chr3 19322041 19322238 -140277545 - LTR87 LTR ERVL? -84 540 327 6 732 961 318 73 42 chr3 19322336 19323023 -140276760 + L1MC2 LINE L1 5622 6329 -15 6 732 324 370 64 92 chr3 19323043 19323148 -140276635 - LTR87 LTR ERVL? -303 321 191 6 732 353 240 40 0 chr3 19323148 19323223 -140276560 + B1_Mur2 SINE Alu 70 147 -2 6 732 324 370 64 92 chr3 19323223 19323370 -140276413 - LTR87 LTR ERVL? -303 190 4 6 732 186 269 58 0 chr3 19323373 19323425 -140276358 + MIR SINE MIR 160 214 -48 6 732 378 275 79 10 chr3 19323518 19323720 -140276063 + L1MA6 LINE L1 6085 6300 0 6 732 21 0 0 0 chr3 19323979 19324000 -140275783 + AT_rich Low_complexity Low_complexity 1 21 0 6 732 1754 172 53 25 chr3 19324040 19324254 -140275529 - RMER17C LTR ERVK 0 410 194 6 732 1219 0 47 0 chr3 19324254 19324425 -140275358 + (GA)n Simple_repeat Simple_repeat 1 179 0 6 732 1754 172 53 25 chr3 19324425 19324609 -140275174 - RMER17C LTR ERVK -217 193 2 6 732 230 314 102 23 chr3 19324625 19324713 -140275070 + LTR16D2 LTR ERVL 111 205 -367 6 732 2046 205 39 2 chr3 19324739 19325145 -140274638 - MTC LTR MaLR 0 421 1 6 732 203 216 59 0 chr3 19327199 19327250 -140272533 + (TATATG)n Simple_repeat Simple_repeat 4 57 0 6 732 459 325 45 42 chr3 19327257 19327546 -140272237 - B4A SINE B4 -2 290 1 6 732 467 259 62 108 chr3 19327702 19327795 -140271988 - CYRA11_Mm Unknown Y-chromosome -144 473 395 6 732 1303 126 28 14 chr3 19327795 19328013 -140271770 + URR1A DNA MER1_type 1 221 -5 6 732 1420 71 11 5 chr3 19328747 19328932 -140270851 - B2_Mm2 SINE B2 -9 186 1 6 732 700 220 0 0 chr3 19329236 19329377 -140270406 + B1_Mur2 SINE Alu 1 141 -8 6 732 493 333 30 24 chr3 19330451 19330620 -140269163 + MLT1I LTR MaLR 48 217 -194 6 732 289 301 82 17 chr3 19330621 19330882 -140268901 - MER33 DNA MER1_type -1 323 18 6 732 639 269 35 30 chr3 19330882 19331085 -140268698 - MER2 DNA MER2_type -1 344 141 6 732 245 372 43 0 chr3 19331110 19331204 -140268579 - PB1D10 SINE Alu -15 102 5 6 732 749 222 0 0 chr3 19331243 19331378 -140268405 + B1_Mus2 SINE Alu 1 135 -12 6 732 401 306 40 16 chr3 19331403 19331529 -140268254 - B1F SINE Alu -9 140 12 6 732 1465 179 63 20 chr3 19331535 19331882 -140267901 + Lx5 LINE L1 5955 6316 -734 6 732 2779 147 33 21 chr3 19331911 19332433 -140267350 - L1_Mur2 LINE L1 0 5877 5350 6 732 6460 144 25 105 chr3 19332452 19334487 -140265296 - Lx LINE L1 0 6654 4938 6 732 1588 31 0 0 chr3 19334487 19334679 -140265104 + L1Md_A LINE L1 6391 6582 0 6 732 5328 151 40 217 chr3 19334679 19335269 -140264514 - Lx LINE L1 -949 4937 4352 6 732 8576 81 36 11 chr3 19335267 19337087 -140262696 + L1VL4 LINE L1 413 2276 -1283 6 732 799 134 7 13 chr3 19337078 19337229 -140262554 - L1_Mur2 LINE L1 -516 5361 5212 6 732 1250 180 0 0 chr3 19337230 19337436 -140262347 + ORR1B2 LTR MaLR 162 367 0 6 732 225 286 54 0 chr3 19337658 19337714 -140262069 - MTE-int LTR MaLR -1458 122 64 6 732 233 20 102 0 chr3 19337748 19337797 -140261986 + (TTTTG)n Simple_repeat Simple_repeat 2 55 0 6 732 445 265 77 4 chr3 19338086 19338270 -140261513 - ORR1E LTR MaLR -185 199 1 6 732 223 337 0 0 chr3 19338309 19338392 -140261391 + L2 LINE L2 894 976 -2443 6 732 297 304 62 62 chr3 19338534 19338678 -140261105 + MLT1B LTR MaLR 1 144 -323 6 732 214 50 50 0 chr3 19338690 19338730 -140261053 + (TTTTG)n Simple_repeat Simple_repeat 2 43 0 6 732 764 297 94 47 chr3 19338735 19339074 -140260709 - RMER5 LTR ERV1 -36 498 144 6 732 299 257 132 69 chr3 19339098 19339257 -140260526 + MLT1B LTR MaLR 167 335 -55 6 732 225 376 40 23 chr3 19339739 19339913 -140259870 + L2 LINE L2 2765 2941 -478 6 732 1288 165 23 0 chr3 19339995 19340213 -140259570 - URR1B DNA MER1_type -2 223 1 6 732 1438 201 68 14 chr3 19340288 19340641 -140259142 - L1_Rod LINE L1 -168 5679 5308 6 732 7283 83 14 10 chr3 19340647 19341917 -140257866 - L1_Mus4 LINE L1 -7 6629 5355 6 732 27 0 0 0 chr3 19341917 19341944 -140257839 + AT_rich Low_complexity Low_complexity 1 27 0 6 732 1989 217 16 24 chr3 19341957 19342381 -140257402 - MTC LTR MaLR 0 421 1 6 732 544 147 45 40 chr3 19342406 19342583 -140257200 + CT-rich Low_complexity Low_complexity 3 180 0 6 732 691 272 34 40 chr3 19342616 19342792 -140256991 - B3A SINE B2 -23 175 1 6 732 1003 221 55 13 chr3 19342797 19343108 -140256675 - L1_Rod LINE L1 -543 5304 4981 6 732 228 250 54 0 chr3 19343161 19343217 -140256566 - L1_Mur2 LINE L1 -1813 4064 4006 6 732 5929 244 93 35 chr3 19343200 19345776 -140254007 - L1_Rod LINE L1 -1886 3961 1237 6 732 308 200 31 10 chr3 19345784 19345880 -140253903 - Lx6 LINE L1 -7 7453 7356 6 732 2480 242 19 41 chr3 19345939 19346458 -140253325 - Lx6 LINE L1 -61 7399 6884 6 732 441 0 0 0 chr3 19346458 19346507 -140253276 + (TTCC)n Simple_repeat Simple_repeat 1 49 0 6 732 540 0 0 0 chr3 19346507 19346566 -140253217 + (TC)n Simple_repeat Simple_repeat 2 61 0 6 732 2480 242 19 41 chr3 19346566 19346660 -140253123 - Lx6 LINE L1 -577 6883 6799 6 732 635 270 7 0 chr3 19347409 19347546 -140252237 - ID_B1 SINE B4 -1 223 86 6 732 845 120 137 44 chr3 19348689 19348916 -140250867 + Lx9 LINE L1 7396 7643 -1 6 732 527 322 59 28 chr3 19348960 19349315 -140250468 + Lx8 LINE L1 6806 7171 -302 6 732 3864 221 44 22 chr3 19349655 19350617 -140249166 - Lx2B LINE L1 -5 6995 6013 6 732 407 233 47 0 chr3 19351078 19351164 -140248619 + MLT1H LTR MaLR 119 208 -341 6 732 435 234 78 72 chr3 19351192 19351372 -140248411 + MLT1H LTR MaLR 369 549 0 6 732 431 331 110 0 chr3 19351608 19351735 -140248048 + RSINE1 SINE B4 1 141 -24 6 732 378 0 0 0 chr3 19351741 19351783 -140248000 + (CA)n Simple_repeat Simple_repeat 2 43 0 6 732 27 49 0 0 chr3 19352141 19352182 -140247601 + AT_rich Low_complexity Low_complexity 1 41 0 6 732 203 132 12 50 chr3 19352213 19352293 -140247490 + (TATAA)n Simple_repeat Simple_repeat 2 78 0 6 732 5020 66 20 1 chr3 19352308 19352962 -140246821 + L1_Mus1 LINE L1 5900 6565 -2 6 732 195 42 0 0 chr3 19352976 19353000 -140246783 + (TAA)n Simple_repeat Simple_repeat 2 25 0 6 732 214 235 14 14 chr3 19353065 19353134 -140246649 + T-rich Low_complexity Low_complexity 2 70 0 6 732 234 0 0 0 chr3 19355197 19355223 -140244560 + (CAAA)n Simple_repeat Simple_repeat 1 26 0 6 732 804 242 92 9 chr3 19355664 19355881 -140243902 - Lx6 LINE L1 -93 7367 7133 6 732 23 54 0 0 chr3 19357337 19357374 -140242409 + AT_rich Low_complexity Low_complexity 1 37 0 6 732 998 231 29 5 chr3 19357431 19357640 -140242143 - B3 SINE B2 0 216 3 6 732 416 279 48 42 chr3 19357658 19357823 -140241960 + Lx8 LINE L1 6789 6954 -519 6 732 465 19 0 0 chr3 19359708 19359762 -140240021 + (TTCC)n Simple_repeat Simple_repeat 2 55 0 6 732 345 75 0 0 chr3 19359766 19359819 -140239964 + (TCTCTG)n Simple_repeat Simple_repeat 2 54 0 6 732 795 177 0 0 chr3 19361146 19361287 -140238496 - B1_Mus1 SINE Alu -7 141 1 6 732 36863 5 0 0 chr3 19362153 19367507 -140232276 + L1Md_A LINE L1 232 5586 -297 6 732 9014 5 0 0 chr3 19367507 19368503 -140231280 + L1Md_A LINE L1 5587 6582 0 6 732 312 27 0 0 chr3 19369288 19369325 -140230458 + (TAAA)n Simple_repeat Simple_repeat 2 38 0 6 732 12924 88 17 5 chr3 19369358 19371654 -140228129 + L1VL4 LINE L1 214 2541 -1018 6 732 717 97 0 0 chr3 19371654 19371757 -140228026 + (TTTC)n Simple_repeat Simple_repeat 2 104 0 6 732 12924 86 12 6 chr3 19371757 19372043 -140227740 + L1VL4 LINE L1 2542 2830 -729 6 732 1087 102 6 11 chr3 19372075 19372253 -140227530 + (TTTC)n Simple_repeat Simple_repeat 3 179 0 6 732 563 234 136 29 chr3 19372286 19372544 -140227239 + MTD LTR MaLR 50 367 -52 6 732 228 370 30 0 chr3 19373032 19373132 -140226651 + MIRb SINE MIR 150 252 -16 6 732 14232 124 24 33 chr3 19374335 19377438 -140222345 + L1VL4 LINE L1 143 3206 -353 6 732 1747 48 0 0 chr3 19377439 19377670 -140222113 - L1_Mm LINE L1 -1660 4223 3993 6 732 8031 56 2 3 chr3 19377669 19378737 -140221046 + L1Md_F2 LINE L1 4520 5586 -297 6 732 7561 69 9 3 chr3 19378737 19379725 -140220058 + L1Md_F2 LINE L1 5587 6580 -2 6 732 1016 225 58 25 chr3 19379922 19380200 -140219583 - RMER17C LTR ERVK 0 410 124 6 732 1574 166 0 17 chr3 19380200 19380494 -140219289 - RMER17C-int LTR ERVK -1057 2181 1893 6 732 351 0 0 0 chr3 19380505 19380544 -140219239 + (TTTA)n Simple_repeat Simple_repeat 3 41 0 7 732 1107 94 12 12 chr3 19380544 19380705 -140219078 - B2_Mm2 SINE B2 -34 161 1 7 732 3465 140 115 64 chr3 19380721 19381528 -140218255 - RMER17C-int LTR ERVK -1353 1885 1038 6 732 607 249 82 128 chr3 19381946 19382494 -140217289 - RMER17C-int LTR ERVK -2714 524 2 6 732 589 234 92 62 chr3 19382495 19382787 -140216996 - RMER17C LTR ERVK 0 410 110 6 732 577 248 114 15 chr3 19383438 19383569 -140216214 + RSINE1 SINE B4 3 146 -19 7 732 425 261 17 0 chr3 19383611 19383726 -140216057 + Lx7 LINE L1 6357 6473 -1223 7 732 279 271 74 0 chr3 19383728 19383850 -140215933 + Lx7 LINE L1 7286 7416 -280 7 732 366 263 7 42 chr3 19383916 19384059 -140215724 + Lx7 LINE L1 7559 7696 0 7 732 978 135 11 6 chr3 19384582 19384761 -140215022 + CT-rich Low_complexity Low_complexity 1 180 0 7 732 444 37 0 0 chr3 19384761 19384814 -140214969 + (TTTC)n Simple_repeat Simple_repeat 4 57 0 7 732 225 0 0 0 chr3 19385590 19385615 -140214168 + (CA)n Simple_repeat Simple_repeat 1 25 0 7 732 230 297 142 17 chr3 19385851 19385971 -140213812 + MIR3 SINE MIR 60 194 -14 7 732 859 266 98 8 chr3 19387811 19388069 -140211714 + ORR1E LTR MaLR 1 301 -78 7 732 471 231 11 0 chr3 19388074 19388165 -140211618 + B3 SINE B2 1 92 -124 7 732 6886 205 58 15 chr3 19388706 19391160 -140208623 + Lx7 LINE L1 4549 7115 -581 7 732 329 362 10 42 chr3 19391258 19391451 -140208332 - RMER4B LTR ERVK -395 190 4 7 732 554 273 0 0 chr3 19391531 19391652 -140208131 + Lx7 LINE L1 7118 7238 -458 7 732 234 0 0 0 chr3 19391757 19391783 -140208000 + (TTG)n Simple_repeat Simple_repeat 3 28 0 7 732 315 0 0 0 chr3 19391783 19391818 -140207965 + (TGG)n Simple_repeat Simple_repeat 1 35 0 7 732 226 175 0 0 chr3 19391818 19391858 -140207925 + RLTR20A LTR ERVK 447 486 -55 7 732 1647 303 72 36 chr3 19391894 19392001 -140207782 - L1M2 LINE L1 -743 5400 5291 7 732 213 65 0 0 chr3 19392001 19392032 -140207751 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 7 732 1647 303 72 36 chr3 19392032 19392876 -140206907 - L1M2 LINE L1 -853 5290 4414 7 732 6403 113 6 34 chr3 19395352 19396351 -140203432 + Lx2 LINE L1 5745 6715 -282 7 732 2120 47 63 45 chr3 19396352 19396684 -140203099 + ORR1A1 LTR MaLR 1 338 -8 7 732 2095 84 7 0 chr3 19396687 19396972 -140202811 + Lx2 LINE L1 6711 6997 0 7 732 225 94 0 0 chr3 19397431 19397463 -140202320 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 7 732 732 251 112 23 chr3 19397806 19398116 -140201667 - MLT1A1 LTR MaLR -33 375 1 7 91 1555 256 59 7 chr3 19398540 19398981 -140200802 + Lx2B LINE L1 6531 6994 -6 7 733 414 304 91 63 chr3 19398987 19399208 -140200575 + B4A SINE B4 3 229 -63 7 733 22 70 0 0 chr3 19400252 19400295 -140199488 + AT_rich Low_complexity Low_complexity 1 43 0 7 733 246 262 33 0 chr3 19400299 19400360 -140199423 + ID4_ SINE ID 2 64 -19 7 733 233 212 30 0 chr3 19400380 19400446 -140199337 + GA-rich Low_complexity Low_complexity 5 72 0 7 733 7074 58 24 0 chr3 19400616 19401488 -140198295 - RLTR13B1 LTR ERVK 0 893 1 7 733 657 271 77 0 chr3 19401545 19401715 -140198068 + Lx8 LINE L1 7152 7334 -139 7 733 218 207 17 0 chr3 19401715 19401773 -140198010 + (CAT)n Simple_repeat Simple_repeat 3 61 0 7 733 24 0 0 0 chr3 19401894 19401918 -140197865 + AT_rich Low_complexity Low_complexity 1 24 0 7 733 361 224 98 49 chr3 19401928 19402050 -140197733 + B3A SINE B2 2 129 -69 7 733 742 162 0 0 chr3 19402095 19402206 -140197577 + B1_Mur2 SINE Alu 1 111 -38 7 733 260 235 241 9 chr3 19402204 19402320 -140197463 + MER2 DNA MER2_type 9 151 -194 7 733 464 235 186 15 chr3 19402335 19402534 -140197249 - MER2 DNA MER2_type -112 233 1 7 733 348 24 0 0 chr3 19402538 19402579 -140197204 + (CA)n Simple_repeat Simple_repeat 1 41 0 7 733 8190 41 0 0 chr3 19403460 19404679 -140195104 - L1Md_T LINE L1 0 6582 5364 7 733 11437 20 0 0 chr3 19404676 19405998 -140193785 + L1_Mm LINE L1 3003 4324 -1559 7 733 259 234 154 70 chr3 19405994 19406150 -140193633 - L1MC LINE L1 -2105 5777 5609 7 733 465 276 98 42 chr3 19406372 19406565 -140193218 + MIRc SINE MIR 45 248 -20 7 733 1899 125 3 65 chr3 19407225 19407421 -140192362 - ORR1A4 LTR MaLR 0 329 135 7 733 7178 39 6 2 chr3 19407421 19408277 -140191506 + L1Md_F2 LINE L1 5710 6568 -14 7 733 1899 125 3 65 chr3 19408277 19408431 -140191352 - ORR1A4 LTR MaLR -195 134 1 7 733 830 10 0 0 chr3 19409829 19409932 -140189851 - B1_Mus2 SINE Alu 0 147 45 7 733 492 317 65 22 chr3 19410666 19410880 -140188903 + B4A SINE B4 2 224 -68 7 733 291 54 0 0 chr3 19410880 19410917 -140188866 + (ATG)n Simple_repeat Simple_repeat 3 39 0 7 733 492 317 65 22 chr3 19410917 19410979 -140188804 + B4A SINE B4 225 290 -2 7 733 1050 8 0 0 chr3 19414917 19415036 -140184747 + (TTCTC)n Simple_repeat Simple_repeat 1 119 0 7 733 1012 134 6 11 chr3 19415068 19415249 -140184534 + C-rich Low_complexity Low_complexity 1 180 0 7 733 412 0 73 0 chr3 19415252 19415320 -140184463 + (TC)n Simple_repeat Simple_repeat 1 73 0 7 733 450 278 0 0 chr3 19415355 19415463 -140184320 - PB1D7 SINE Alu -6 114 7 7 733 264 258 90 38 chr3 19415935 19416068 -140183715 - L1ME3 LINE L1 -1 6161 6022 7 733 351 0 0 0 chr3 19416157 19416196 -140183587 + (TG)n Simple_repeat Simple_repeat 2 40 0 7 733 609 256 155 6 chr3 19416514 19416652 -140183131 + B3 SINE B2 1 145 -71 7 733 261 0 0 0 chr3 19416652 19416681 -140183102 + (CA)n Simple_repeat Simple_repeat 2 30 0 7 733 609 256 155 6 chr3 19416681 19416723 -140183060 + B3 SINE B2 146 208 -8 7 733 721 233 74 5 chr3 19416724 19416914 -140182869 + Lx9 LINE L1 7259 7461 -183 7 733 387 0 0 0 chr3 19416923 19416966 -140182817 + (TG)n Simple_repeat Simple_repeat 2 44 0 7 733 363 179 105 0 chr3 19416971 19417066 -140182717 + Lx9 LINE L1 7532 7636 -8 7 733 222 269 138 9 chr3 19418029 19418145 -140181638 - L3 LINE CR1 -2227 2262 2132 7 733 570 270 162 50 chr3 19419193 19419552 -140180231 - MLT2D LTR ERVL -11 403 5 7 733 185 297 109 11 chr3 19419648 19419740 -140180043 - MIR SINE MIR -66 142 42 7 733 2078 158 83 25 chr3 19422523 19422918 -140176865 - MTC LTR MaLR 0 421 4 7 733 1460 88 0 10 chr3 19424723 19424919 -140174864 - B2_Mm2 SINE B2 0 195 2 7 733 370 262 169 62 chr3 19425233 19425363 -140174420 + RSINE1 SINE B4 4 147 -18 7 733 255 189 0 0 chr3 19425937 19425990 -140173793 + CT-rich Low_complexity Low_complexity 3 55 0 7 733 655 185 67 30 chr3 19426007 19426141 -140173642 - B1_Mur2 SINE Alu -9 140 2 7 733 489 189 63 38 chr3 19426150 19426309 -140173474 - Lx7 LINE L1 -5 7691 7529 7 733 207 162 0 0 chr3 19426324 19426361 -140173422 + (CA)n Simple_repeat Simple_repeat 1 37 0 7 733 367 199 17 10 chr3 19427500 19427603 -140172180 - MTEb LTR MaLR 0 419 278 7 733 275 343 95 34 chr3 19427685 19427833 -140171950 - MTEb LTR MaLR -208 162 6 7 733 2850 167 83 5 chr3 19427996 19428549 -140171234 - RLTR17 LTR ERVK -96 596 1 7 733 414 218 131 11 chr3 19428702 19428831 -140170952 - MTEb LTR MaLR 0 379 239 7 733 877 217 51 67 chr3 19428900 19429256 -140170527 + RLTR15 LTR ERVK 1 350 -9 7 733 332 294 59 0 chr3 19429293 19429395 -140170388 - MTEb LTR MaLR -251 108 1 7 733 1489 208 30 53 chr3 19434440 19434801 -140164982 + ORR1E LTR MaLR 1 353 -6 7 733 600 246 91 43 chr3 19436010 19436240 -140163543 + B4A SINE B4 3 243 -49 7 733 380 277 43 0 chr3 19436669 19436763 -140163020 + B1F SINE Alu 1 98 -51 7 733 607 266 92 15 chr3 19436829 19437024 -140162759 + MTD LTR MaLR 1 210 -209 7 733 428 143 0 0 chr3 19437025 19437102 -140162681 + Lx9 LINE L1 7423 7499 -145 7 733 1549 171 92 27 chr3 19437230 19437567 -140162216 + ORR1B2 LTR MaLR 1 359 -8 7 733 647 183 15 8 chr3 19438172 19438304 -140161479 - L1MA8 LINE L1 -29 6262 6130 7 733 207 0 0 0 chr3 19438371 19438394 -140161389 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 7 733 1010 131 0 0 chr3 19438601 19438739 -140161044 + B1_Mus1 SINE Alu 2 139 -9 7 733 269 0 56 0 chr3 19438739 19438775 -140161008 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 7 733 1245 104 65 16 chr3 19439604 19439789 -140159994 - B2_Mm2 SINE B2 -1 194 1 7 733 504 0 0 0 chr3 19439861 19439917 -140159866 + (TG)n Simple_repeat Simple_repeat 2 57 0 7 733 1049 299 78 21 chr3 19440325 19440799 -140158984 - L1MA4 LINE L1 -384 5916 5416 7 733 1327 135 9 18 chr3 19440803 19441030 -140158753 - ORR1A3 LTR MaLR -8 318 94 7 733 7606 65 18 8 chr3 19441031 19441050 -140158733 - L1Md_F2 LINE L1 0 6582 6564 7 733 281 24 49 0 chr3 19441050 19441091 -140158692 + (TTTAA)n Simple_repeat Simple_repeat 3 45 0 7 733 10072 64 8 40 chr3 19441091 19443161 -140156622 - L1Md_F2 LINE L1 -19 6563 4559 7 733 536 109 15 66 chr3 19443162 19443298 -140156485 - ORR1A3 LTR MaLR -253 141 1 7 733 395 322 76 79 chr3 19443456 19444187 -140155596 - L1MEg LINE L1 -3922 2161 1041 7 733 1069 269 104 12 chr3 19444918 19445264 -140154519 + MTE2b LTR MaLR 2 379 0 7 733 409 280 32 0 chr3 19446244 19446337 -140153446 - RSINE1 SINE B4 -2 163 68 7 733 298 353 39 0 chr3 19449112 19449265 -140150518 + L1MDb LINE L1 140 298 -6242 7 733 303 391 78 28 chr3 19449348 19449632 -140150151 + L1MDb LINE L1 374 671 -5869 7 733 1017 207 39 0 chr3 19449709 19449917 -140149866 + B3 SINE B2 1 216 0 7 733 833 281 102 29 chr3 19449962 19450989 -140148794 + L1MDb LINE L1 898 2008 -4625 7 733 369 43 0 0 chr3 19451014 19451061 -140148722 + (CA)n Simple_repeat Simple_repeat 2 48 0 7 733 485 257 105 97 chr3 19451285 19451552 -140148231 + L1MDb LINE L1 2256 2524 -4109 7 733 1183 48 7 0 chr3 19451567 19451713 -140148070 + B1_Mus1 SINE Alu 2 148 0 7 733 270 57 18 36 chr3 19451717 19451772 -140148011 + (CAAAA)n Simple_repeat Simple_repeat 2 55 0 7 733 1040 265 151 17 chr3 19451957 19452256 -140147527 + ORR1E LTR MaLR 19 357 -2 7 733 2151 87 28 43 chr3 19453569 19453893 -140145890 - ORR1A2 LTR MaLR -8 319 1 7 733 251 213 66 0 chr3 19454377 19454438 -140145345 - LTR88b LTR Gypsy? -656 181 117 7 733 444 298 0 66 chr3 19455524 19455646 -140144137 + PB1D7 SINE Alu 6 119 -1 7 733 718 226 67 26 chr3 19455697 19455892 -140143891 - B3 SINE B2 -11 205 3 7 733 236 272 161 0 chr3 19458050 19458131 -140141652 - B4 SINE B4 -89 203 110 7 733 654 289 135 35 chr3 19458537 19459054 -140140729 + L1M4 LINE L1 503 1071 -5471 7 733 1112 270 44 86 chr3 19459278 19459711 -140140072 + Lx8 LINE L1 7036 7450 -23 7 733 1361 55 0 0 chr3 19460252 19460416 -140139367 + U1 snRNA snRNA 1 164 -1 8 733 570 274 20 7 chr3 19460528 19460675 -140139108 + B1F1 SINE Alu 1 149 0 8 733 3480 60 7 18 chr3 19461815 19462270 -140137513 - L1_Mus2 LINE L1 0 6566 6117 8 733 964 272 68 76 chr3 19463162 19463620 -140136163 - LTR55 LTR ERV -83 465 12 8 733 613 138 14 35 chr3 19463820 19463963 -140135820 + GA-rich Low_complexity Low_complexity 5 144 0 8 733 425 289 129 28 chr3 19464126 19464293 -140135490 + ID_B1 SINE B4 55 238 -54 8 733 218 236 48 8 chr3 19465288 19465412 -140134371 + (TA)n Simple_repeat Simple_repeat 1 129 0 8 733 769 200 0 0 chr3 19466213 19466353 -140133430 + B1_Mus2 SINE Alu 2 141 -6 8 733 581 0 14 0 chr3 19466355 19466424 -140133359 + (TAGA)n Simple_repeat Simple_repeat 1 70 0 8 733 195 100 0 0 chr3 19467583 19467613 -140132170 + (A)n Simple_repeat Simple_repeat 1 30 0 8 733 216 204 0 0 chr3 19467667 19467711 -140132072 + T-rich Low_complexity Low_complexity 1 44 0 8 733 398 322 129 84 chr3 19467791 19467954 -140131829 + L2 LINE L2 2030 2189 -1230 8 733 255 61 0 0 chr3 19467954 19467987 -140131796 + (TTTTG)n Simple_repeat Simple_repeat 3 35 0 8 733 398 322 129 84 chr3 19467987 19468379 -140131404 + L2 LINE L2 2190 2610 -809 8 733 275 217 122 65 chr3 19468549 19468672 -140131111 + MIR SINE MIR 25 154 -108 8 733 631 297 52 0 chr3 19469281 19469436 -140130347 + RSINE1 SINE B4 1 163 -2 8 733 239 176 0 0 chr3 19469465 19469499 -140130284 + BC1_Mm scRNA scRNA 44 77 -75 8 733 255 283 109 79 chr3 19469489 19469654 -140130129 - MLT1D LTR MaLR -77 428 259 8 733 5250 222 38 45 chr3 19469655 19471929 -140127854 - Lx4B LINE L1 -94 6964 4715 8 733 327 191 0 0 chr3 19472403 19472471 -140127312 + GA-rich Low_complexity Low_complexity 1 68 0 8 733 234 0 0 0 chr3 19472627 19472653 -140127130 + (A)n Simple_repeat Simple_repeat 1 26 0 8 733 4547 166 68 11 chr3 19472654 19473616 -140126167 - Lx4B LINE L1 -1167 4710 3695 8 733 23 33 0 0 chr3 19475218 19475248 -140124535 + AT_rich Low_complexity Low_complexity 1 30 0 8 733 22 0 0 0 chr3 19475523 19475545 -140124238 + AT_rich Low_complexity Low_complexity 1 22 0 8 733 229 99 47 47 chr3 19475644 19475729 -140124054 + (TATATG)n Simple_repeat Simple_repeat 5 89 0 8 733 6171 44 8 0 chr3 19475803 19476555 -140123228 + L1Md_F2 LINE L1 5825 6582 0 8 733 211 261 0 0 chr3 19478978 19479024 -140120759 + (CTG)n Simple_repeat Simple_repeat 1 46 0 8 733 258 349 142 23 chr3 19479987 19480163 -140119620 - LTR84a LTR ERVL -104 653 457 8 733 4820 174 79 22 chr3 19480704 19481676 -140118107 + RLTR25B LTR ERVK 1 1028 0 8 733 452 312 190 16 chr3 19482288 19482608 -140117175 - Arthur1 DNA Tip100 -8 3939 3565 8 733 249 83 0 0 chr3 19482608 19482644 -140117139 + (TTA)n Simple_repeat Simple_repeat 1 36 0 8 733 452 312 190 16 chr3 19482644 19482707 -140117076 - Arthur1 DNA Tip100 -383 3564 3489 8 733 669 348 155 11 chr3 19482706 19483061 -140116722 - Arthur1 DNA Tip100 -3379 568 163 8 733 375 294 92 0 chr3 19483794 19483947 -140115836 - Lx8 LINE L1 -337 7136 6970 8 733 1120 165 42 5 chr3 19483957 19484170 -140115613 - URR1B DNA MER1_type 0 225 5 8 733 337 285 112 11 chr3 19484172 19484360 -140115423 + Lx8 LINE L1 7267 7473 0 8 733 648 101 0 9 chr3 19484388 19484498 -140115285 + Lx LINE L1 6544 6652 -2 8 733 28 61 0 0 chr3 19484558 19484607 -140115176 + AT_rich Low_complexity Low_complexity 1 49 0 8 733 319 53 17 34 chr3 19484919 19484978 -140114805 + (CAAA)n Simple_repeat Simple_repeat 2 59 0 8 733 216 0 0 0 chr3 19486513 19486537 -140113246 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 8 733 814 281 44 74 chr3 19486558 19486854 -140112929 + RLTR20D LTR ERVK 1 287 -281 8 733 422 244 76 97 chr3 19486840 19486895 -140112888 + RLTR20D LTR ERVK 423 478 -100 8 733 369 0 0 0 chr3 19486895 19486936 -140112847 + (TG)n Simple_repeat Simple_repeat 2 42 0 8 733 422 244 76 97 chr3 19486936 19487025 -140112758 + RLTR20D LTR ERVK 479 563 -15 8 733 1585 43 0 0 chr3 19487685 19487871 -140111912 - B2_Mm1a SINE B2 -6 187 2 8 733 3807 197 61 22 chr3 19487873 19488909 -140110874 + MYSERV16_I-int LTR ERVK 1 1393 -1449 8 733 1166 101 119 0 chr3 19488892 19489111 -140110672 + MYSERV16_I-int LTR ERVK 1067 1311 -1015 8 733 2065 126 3 33 chr3 19489116 19489445 -140110338 + ORR1A2 LTR MaLR 1 319 -8 8 733 9879 137 99 11 chr3 19489449 19491252 -140108531 + ORR1A2-int LTR MaLR 1 1963 0 8 733 1698 165 58 0 chr3 19491252 19491561 -140108222 + ORR1A2 LTR MaLR 1 327 0 8 733 854 112 149 0 chr3 19491561 19491749 -140108034 + MYSERV16_I-int LTR ERVK 1358 1573 -753 8 733 12511 153 31 4 chr3 19491750 19494910 -140104873 - Lx LINE L1 -6 6648 3392 8 733 32823 55 1 0 chr3 19494913 19500000 -140099783 - L1Md_F2 LINE L1 0 6582 1493 8 733 5123 106 11 27 chr3 19500000 19501142 -140098641 - L1Md_F LINE L1 -4391 1492 390 1 733 14488 92 34 5 chr3 19501149 19503918 -140095865 - L1VL4 LINE L1 -510 3049 193 2 733 3009 187 31 3 chr3 19503919 19504530 -140095253 + MYSERV16_I-int LTR ERVK 1562 2189 -137 3 733 716 151 87 0 chr3 19504529 19504701 -140095082 + MYSERV16_I-int LTR ERVK 2105 2291 -35 3 733 767 293 24 54 chr3 19504753 19505049 -140094734 + RLTR20D LTR ERVK 1 287 -281 4 733 342 303 82 19 chr3 19505024 19505091 -140094692 + RLTR20D LTR ERVK 411 489 -89 4 733 423 0 0 0 chr3 19505091 19505138 -140094645 + (TG)n Simple_repeat Simple_repeat 2 48 0 5 733 342 303 82 19 chr3 19505138 19505228 -140094555 + RLTR20D LTR ERVK 490 577 -1 4 733 1060 136 0 17 chr3 19506273 19506423 -140093360 + B2_Mm2 SINE B2 5 154 -41 6 733 303 49 0 0 chr3 19506423 19506464 -140093319 + (CAAT)n Simple_repeat Simple_repeat 1 41 0 7 733 1060 136 0 17 chr3 19506464 19506492 -140093291 + B2_Mm2 SINE B2 155 180 -15 6 733 387 0 0 0 chr3 19506629 19506672 -140093111 + (TG)n Simple_repeat Simple_repeat 1 43 0 8 733 387 307 72 31 chr3 19507285 19507507 -140092276 + L1MB5 LINE L1 5857 6087 -87 9 733 212 137 20 0 chr3 19507570 19507621 -140092162 + (TTTA)n Simple_repeat Simple_repeat 4 55 0 1 733 5564 129 15 3 chr3 19507621 19508507 -140091276 - L1_Mur2 LINE L1 -1159 4718 3823 1 733 445 330 90 35 chr3 19508769 19509193 -140090590 - L1ME3B LINE L1 -414 5826 5380 1 733 321 279 0 0 chr3 19509271 19509339 -140090444 + B4 SINE B4 223 290 -2 1 733 382 317 38 11 chr3 19509466 19509651 -140090132 - L1ME3B LINE L1 -4945 1191 1002 1 733 2121 145 82 6 chr3 19512279 19512479 -140087304 - ORR1B2 LTR MaLR 0 367 157 1 733 351 0 0 0 chr3 19512479 19512518 -140087265 + (GA)n Simple_repeat Simple_repeat 2 40 0 1 733 2121 145 82 6 chr3 19512518 19512658 -140087125 - ORR1B2 LTR MaLR -211 156 2 1 733 4541 225 19 27 chr3 19512658 19514172 -140085611 - ORR1B2-int LTR MaLR 0 1509 90 1 733 213 159 0 0 chr3 19514216 19514260 -140085523 + CT-rich Low_complexity Low_complexity 2 45 0 1 733 258 56 0 0 chr3 19515210 19515246 -140084537 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 1 733 260 173 39 0 chr3 19515253 19515305 -140084478 - Lx LINE L1 -377 7319 7266 1 733 835 178 181 6 chr3 19515293 19515505 -140084278 + Lx7 LINE L1 5651 5881 -1815 1 733 327 243 73 55 chr3 19515713 19515822 -140083961 + MLT1D LTR MaLR 253 363 -142 2 733 1798 210 40 15 chr3 19516175 19516571 -140083212 - Lx LINE L1 -1 6653 6248 1 733 3185 162 34 87 chr3 19516574 19517252 -140082531 + RLTR26 LTR ERVK 1 642 0 2 733 1920 99 29 4 chr3 19517255 19517528 -140082255 - Lx LINE L1 -406 6248 5969 1 733 5895 101 45 6 chr3 19517522 19518797 -140080986 - L1VL4 LINE L1 -2226 1333 1 2 733 373 157 197 14 chr3 19518806 19518877 -140080906 - URR1B DNA MER1_type -141 84 1 2 733 205 302 148 50 chr3 19518956 19519057 -140080726 + L2c LINE L2 3271 3381 -6 2 733 1205 233 45 27 chr3 19520146 19520500 -140079283 - MT2A LTR ERVL -124 477 2 2 733 3598 36 2 0 chr3 19521026 19521419 -140078364 - MTA_Mm LTR MaLR -2 394 1 2 733 746 200 77 0 chr3 19521513 19521643 -140078140 + B1_Mur1 SINE Alu 2 141 -8 2 733 302 351 153 19 chr3 19521840 19522049 -140077734 - MIR SINE MIR -18 244 8 2 733 2942 145 110 58 chr3 19522793 19523703 -140076080 - RLTR13D1 LTR ERVK 0 893 1 2 733 225 250 0 170 chr3 19524220 19524326 -140075457 - MER34 LTR ERV1 -251 320 233 3 733 276 338 0 0 chr3 19524402 19524482 -140075301 - MER34 LTR ERV1 -462 80 1 3 733 338 326 88 0 chr3 19524482 19524625 -140075158 - MER82 DNA MER2_type -43 610 455 3 733 340 308 43 25 chr3 19524721 19524884 -140074899 + RLTR23 LTR ERV1 265 430 0 3 733 819 241 58 120 chr3 19525032 19525306 -140074477 - MTE2a LTR MaLR -122 257 1 3 733 387 0 0 0 chr3 19525531 19525574 -140074209 + (TC)n Simple_repeat Simple_repeat 2 44 0 3 733 1198 231 95 43 chr3 19526022 19526370 -140073413 - ORR1D1 LTR MaLR -8 366 1 3 733 642 41 0 0 chr3 19527958 19528031 -140071752 - tRNA-Arg-CGY_ tRNA tRNA -3 73 1 3 733 539 14 0 215 chr3 19528354 19528447 -140071336 + tRNA-Tyr-TAC tRNA tRNA 1 73 -3 3 733 584 0 0 180 chr3 19528781 19528870 -140070913 + tRNA-Tyr-TAC tRNA tRNA 1 73 -3 3 733 616 68 0 0 chr3 19528994 19529067 -140070716 + tRNA-Ala-GCY tRNA tRNA 1 73 -3 3 733 195 42 0 0 chr3 19529478 19529502 -140070281 + (CAAAC)n Simple_repeat Simple_repeat 1 24 0 4 733 225 0 0 0 chr3 19529499 19529524 -140070259 + (A)n Simple_repeat Simple_repeat 1 25 0 4 734 294 143 0 0 chr3 19529939 19529988 -140069795 + (TG)n Simple_repeat Simple_repeat 1 49 0 4 734 1185 88 0 0 chr3 19530951 19531099 -140068684 + B1_Mus1 SINE Alu 1 148 0 4 734 263 117 19 46 chr3 19531549 19531657 -140068126 + A-rich Low_complexity Low_complexity 1 105 0 4 734 212 304 62 25 chr3 19532167 19532248 -140067535 - PB1D10 SINE Alu -19 98 15 4 734 243 0 0 0 chr3 19532280 19532307 -140067476 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 4 734 636 264 89 45 chr3 19533472 19533674 -140066109 + MTEa LTR MaLR 8 218 -161 4 734 619 247 28 116 chr3 19533736 19533951 -140065832 + MTEa LTR MaLR 184 379 0 4 734 265 213 67 0 chr3 19534351 19534426 -140065357 - MER3 DNA MER1_type -7 202 123 4 734 289 180 40 0 chr3 19535235 19535285 -140064498 - MER3 DNA MER1_type -149 60 9 4 734 401 352 83 76 chr3 19535526 19535935 -140063848 + MER77 LTR ERVL 96 507 -100 4 734 411 211 0 0 chr3 19535967 19536062 -140063721 + (TA)n Simple_repeat Simple_repeat 2 96 0 5 734 608 278 226 26 chr3 19536070 19536340 -140063443 - ORR1E LTR MaLR -2 357 34 5 734 293 316 75 25 chr3 19536418 19536538 -140063245 + MER21B LTR ERV1 488 613 -250 5 734 369 365 35 53 chr3 19538155 19538381 -140061402 - RMER12 LTR ERVK 0 1322 1101 5 734 5267 99 30 44 chr3 19538582 19539449 -140060334 - RLTR22_Mur LTR ERVK -993 855 1 5 734 888 223 24 0 chr3 19540676 19540842 -140058941 + B3 SINE B2 2 171 -45 5 734 192 40 0 0 chr3 19540857 19540882 -140058901 + (TAAAA)n Simple_repeat Simple_repeat 2 26 0 5 734 238 265 34 57 chr3 19541341 19541429 -140058354 + MTEa LTR MaLR 6 91 -288 5 734 445 196 0 28 chr3 19542431 19542573 -140057210 + (CCAA)n Simple_repeat Simple_repeat 2 139 0 5 734 233 281 0 0 chr3 19542582 19542639 -140057144 + ORR1E LTR MaLR 297 353 -6 5 734 473 352 45 15 chr3 19542718 19542983 -140056800 + MTE-int LTR MaLR 82 354 -1226 6 734 357 297 0 41 chr3 19542990 19543113 -140056670 + RMER10A LTR ERVL 324 441 -1 6 734 546 321 73 33 chr3 19543562 19543836 -140055947 + B4A SINE B4 2 286 -6 6 734 204 182 0 0 chr3 19543843 19543887 -140055896 + (CA)n Simple_repeat Simple_repeat 1 44 0 6 734 1490 164 130 24 chr3 19545702 19545900 -140053883 + RMER17C LTR ERVK 2 218 -192 6 734 378 0 0 0 chr3 19545900 19545942 -140053841 + (TC)n Simple_repeat Simple_repeat 1 42 0 6 734 1490 164 130 24 chr3 19545942 19546113 -140053670 + RMER17C LTR ERVK 219 409 -1 6 734 2295 180 90 6 chr3 19546955 19547464 -140052319 + Lx9 LINE L1 7064 7615 -29 6 734 405 0 0 0 chr3 19548388 19548433 -140051350 + (TG)n Simple_repeat Simple_repeat 1 45 0 6 734 859 243 154 29 chr3 19548476 19548722 -140051061 - B4A SINE B4 -14 278 2 6 734 27 0 0 0 chr3 19548745 19548772 -140051011 + AT_rich Low_complexity Low_complexity 1 27 0 6 734 1110 121 164 4 chr3 19548861 19549123 -140050660 - Lx4A LINE L1 -2 7056 6753 7 734 351 0 0 0 chr3 19549254 19549293 -140050490 + (TTTTA)n Simple_repeat Simple_repeat 5 43 0 7 734 1127 231 0 5 chr3 19549294 19549494 -140050289 - B3 SINE B2 -17 199 1 7 734 223 270 55 98 chr3 19550039 19550203 -140049580 - MIRm SINE MIR -118 158 2 7 734 7735 62 10 6 chr3 19551402 19551475 -140048308 - L1_Mus1 LINE L1 0 6567 6500 7 734 378 0 0 0 chr3 19551475 19551517 -140048266 + (CA)n Simple_repeat Simple_repeat 2 43 0 7 734 31515 94 19 5 chr3 19551517 19555421 -140044362 - L1_Mus1 LINE L1 -68 6499 2518 7 734 2565 66 17 38 chr3 19555421 19555767 -140044016 - L1Md_F3 LINE L1 0 6584 6246 7 734 31515 108 24 6 chr3 19555767 19557166 -140042617 - L1_Mus1 LINE L1 -3366 2517 1123 7 734 479 88 0 62 chr3 19557166 19557263 -140042520 - L1Md_F2 LINE L1 0 6582 6492 7 734 4193 158 50 29 chr3 19557263 19557926 -140041857 - L1_Mus1 LINE L1 -5494 1122 426 7 734 417 20 0 0 chr3 19558360 19558410 -140041373 + (TG)n Simple_repeat Simple_repeat 2 51 0 7 734 567 171 9 35 chr3 19558423 19558538 -140041245 - RSINE1 SINE B4 -46 119 8 7 734 333 0 0 0 chr3 19562418 19562455 -140037328 + (TG)n Simple_repeat Simple_repeat 2 38 0 8 734 244 219 92 61 chr3 19562455 19562488 -140037295 - L1ME5 LINE L1 -221 5973 5942 8 734 1555 180 135 15 chr3 19562488 19562821 -140036962 - ORR1D1 LTR MaLR -1 373 1 8 734 244 219 92 61 chr3 19562821 19562918 -140036865 - L1ME5 LINE L1 -253 5941 5839 8 734 321 266 0 12 chr3 19563815 19563895 -140035888 + ID_B1 SINE B4 83 161 -63 8 734 24 0 0 0 chr3 19563896 19563920 -140035863 + AT_rich Low_complexity Low_complexity 1 24 0 8 734 377 236 75 9 chr3 19564240 19564347 -140035436 - PB1D10 SINE Alu -2 115 2 8 734 321 204 426 0 chr3 19565946 19566061 -140033722 - Lx8 LINE L1 -910 6563 6400 8 734 237 65 0 0 chr3 19566122 19566153 -140033630 + (GA)n Simple_repeat Simple_repeat 2 32 0 8 734 327 130 0 0 chr3 19566167 19566221 -140033562 + (CA)n Simple_repeat Simple_repeat 1 54 0 8 734 228 35 0 0 chr3 19566459 19566488 -140033295 + (TTTTTG)n Simple_repeat Simple_repeat 4 32 0 8 734 692 168 53 15 chr3 19568291 19568424 -140031359 + B1_Mur4 SINE Alu 11 148 -2 9 734 242 160 20 0 chr3 19568424 19568474 -140031309 + (CAA)n Simple_repeat Simple_repeat 1 51 0 9 734 1437 257 128 55 chr3 19568512 19568760 -140031023 - Lx8 LINE L1 -6 7467 7187 9 734 2868 157 50 7 chr3 19568760 19569298 -140030485 + RLTR31_Mm LTR ERVK 1 561 0 9 734 1437 257 128 55 chr3 19569298 19569617 -140030166 - Lx8 LINE L1 -287 7186 6858 9 734 535 222 114 36 chr3 19569652 19569792 -140029991 + Lx8 LINE L1 6671 6821 -652 9 734 402 21 0 0 chr3 19569995 19570042 -140029741 + (TG)n Simple_repeat Simple_repeat 1 47 0 9 734 662 288 0 0 chr3 19570465 19570604 -140029179 - B3 SINE B2 -76 140 2 9 734 231 159 14 68 chr3 19570612 19570686 -140029097 + (TTTG)n Simple_repeat Simple_repeat 2 71 0 9 734 273 207 0 0 chr3 19572753 19572835 -140026948 + GA-rich Low_complexity Low_complexity 3 84 0 9 734 264 59 0 0 chr3 19573723 19573757 -140026026 + (A)n Simple_repeat Simple_repeat 1 34 0 9 734 189 171 0 0 chr3 19574188 19574223 -140025560 + CT-rich Low_complexity Low_complexity 2 36 0 1 734 947 78 70 0 chr3 19577456 19577585 -140022198 - B1_Mm SINE Alu -9 138 1 1 734 362 313 60 0 chr3 19578653 19578787 -140020996 - L1ME1 LINE L1 0 6179 6038 1 734 316 200 67 0 chr3 19578887 19578962 -140020821 - L1M4 LINE L1 -1052 5094 5015 1 734 745 309 74 39 chr3 19579263 19580057 -140019726 - L1MC LINE L1 -2913 3233 2412 1 734 596 287 63 30 chr3 19580441 19580710 -140019073 - L1ME1 LINE L1 -527 5652 5375 1 734 333 68 0 0 chr3 19581202 19581246 -140018537 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 734 1359 82 55 0 chr3 19583738 19583920 -140015863 - B2_Mm2 SINE B2 -2 193 2 1 734 291 85 0 0 chr3 19586518 19586565 -140013218 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 1 734 784 295 93 66 chr3 19586606 19587133 -140012650 - L1MB2 LINE L1 -36 6135 5595 1 734 21 0 0 0 chr3 19587134 19587155 -140012628 + AT_rich Low_complexity Low_complexity 1 21 0 1 734 553 219 31 8 chr3 19587179 19587308 -140012475 - RSINE1 SINE B4 -31 134 3 1 734 232 366 30 35 chr3 19587526 19587724 -140012059 - Charlie24 DNA MER1_type -2200 250 54 1 734 180 268 0 0 chr3 19587964 19588035 -140011748 + GA-rich Low_complexity Low_complexity 4 74 0 1 734 1059 258 24 61 chr3 19588035 19588073 -140011710 - MTEa LTR MaLR -54 325 292 1 734 2735 90 134 0 chr3 19588073 19588542 -140011241 - RLTR47_MM LTR ERV1 0 532 1 1 734 1059 258 24 61 chr3 19588542 19588833 -140010950 - MTEa LTR MaLR -88 291 8 1 734 186 43 0 0 chr3 19589467 19589490 -140010293 + (CAA)n Simple_repeat Simple_repeat 2 24 0 1 734 61 27 0 0 chr3 19589594 19589669 -140010114 + AT_rich Low_complexity Low_complexity 1 75 0 1 734 378 213 75 0 chr3 19589718 19589812 -140009971 - ID_B1 SINE B4 -1 223 123 1 734 448 100 93 0 chr3 19590145 19590285 -140009498 + (CCCCAG)n Simple_repeat Simple_repeat 4 156 0 1 734 414 0 0 0 chr3 19590457 19590503 -140009280 + (TA)n Simple_repeat Simple_repeat 2 47 0 1 734 227 269 30 0 chr3 19591020 19591087 -140008696 - ID4_ SINE ID -1 82 14 1 734 417 202 16 24 chr3 19592392 19592519 -140007264 + CT-rich Low_complexity Low_complexity 1 126 0 1 734 423 291 57 0 chr3 19592959 19593100 -140006683 + RSINE1 SINE B4 4 152 -13 1 734 22 0 0 0 chr3 19593411 19593433 -140006350 + AT_rich Low_complexity Low_complexity 1 22 0 1 734 244 200 0 35 chr3 19595240 19595297 -140004486 + T-rich Low_complexity Low_complexity 1 55 0 1 734 211 146 0 24 chr3 19597708 19597750 -140002033 + A-rich Low_complexity Low_complexity 1 41 0 1 734 534 98 0 0 chr3 19598147 19598229 -140001554 + (CA)n Simple_repeat Simple_repeat 1 82 0 1 734 456 100 0 0 chr3 19598229 19598309 -140001474 + (GA)n Simple_repeat Simple_repeat 1 80 0 1 734 233 305 84 19 chr3 19598673 19598780 -140001003 + PB1D10 SINE Alu 1 114 -3 1 734 309 262 53 53 chr3 19598962 19599075 -140000708 + L1MA7 LINE L1 6126 6238 -53 1 734 2302 193 36 31 chr3 19599719 19600275 -139999508 - RLTR20B2 LTR ERVK 0 560 2 1 734 288 0 0 0 chr3 19600899 19600931 -139998852 + (CA)n Simple_repeat Simple_repeat 2 33 0 1 734 234 380 0 0 chr3 19602858 19602950 -139996833 + MLT1A0 LTR MaLR 64 155 -210 1 734 348 271 17 45 chr3 19602995 19603118 -139996665 + MLT1A0 LTR MaLR 226 352 -56 1 734 453 49 0 0 chr3 19603441 19603502 -139996281 - L1_Mus1 LINE L1 0 6567 6507 1 734 267 279 35 35 chr3 19603748 19603863 -139995920 - MIRb SINE MIR -91 177 63 1 734 2560 127 14 19 chr3 19604900 19605405 -139994378 - LTRIS4 LTR ERV1 0 512 1 1 734 235 287 143 25 chr3 19605967 19606128 -139993655 + MIR SINE MIR 44 223 -39 1 734 240 304 75 60 chr3 19606831 19606964 -139992819 - LTR50 LTR ERVL -279 516 382 1 734 324 292 188 13 chr3 19607052 19607201 -139992582 - LTR50 LTR ERVL -535 260 86 1 734 208 180 0 57 chr3 19609604 19609657 -139990126 + A-rich Low_complexity Low_complexity 2 51 0 1 734 364 278 92 18 chr3 19609679 19609906 -139989877 + HAL1 LINE L1 1122 1365 -1142 1 734 282 366 147 21 chr3 19610084 19610274 -139989509 + FordPrefect DNA Tip100 212 425 -1258 1 734 33 0 0 0 chr3 19610276 19610309 -139989474 + AT_rich Low_complexity Low_complexity 1 33 0 1 734 1004 123 0 0 chr3 19610309 19610455 -139989328 - B1_Mus2 SINE Alu 0 147 2 1 734 242 336 40 24 chr3 19610476 19610601 -139989182 - MLT1A1 LTR MaLR -12 396 270 1 734 848 232 171 29 chr3 19610669 19610805 -139988978 - ORR1D1 LTR MaLR -60 314 178 1 734 342 0 0 0 chr3 19610805 19610843 -139988940 + (CA)n Simple_repeat Simple_repeat 1 38 0 1 734 848 232 171 29 chr3 19610843 19610981 -139988802 - ORR1D1 LTR MaLR -197 177 1 1 734 933 344 115 6 chr3 19611137 19611651 -139988132 + FordPrefect DNA Tip100 658 1227 -456 1 734 257 350 85 7 chr3 19611812 19611953 -139987830 + FordPrefect DNA Tip100 1456 1607 -76 1 734 24 32 0 0 chr3 19614719 19614750 -139985033 + AT_rich Low_complexity Low_complexity 1 31 0 1 734 22 35 0 0 chr3 19615878 19615907 -139983876 + AT_rich Low_complexity Low_complexity 1 29 0 1 734 534 244 60 9 chr3 19616179 19616295 -139983488 + RSINE1 SINE B4 2 123 -42 1 734 3772 178 16 25 chr3 19616317 19617124 -139982659 + Lx9 LINE L1 6633 7432 -212 1 734 235 352 0 0 chr3 19617125 19617179 -139982604 + RSINE1 SINE B4 112 165 0 1 734 869 250 39 0 chr3 19617218 19617426 -139982357 + B3 SINE B2 1 216 0 1 734 1353 32 16 4 chr3 19618381 19618628 -139981155 + (GAAA)n Simple_repeat Simple_repeat 1 250 0 1 734 224 355 86 0 chr3 19618812 19618905 -139980878 + MIRc SINE MIR 49 149 -119 1 734 3156 143 21 19 chr3 19619764 19620396 -139979387 - L1_Mur3 LINE L1 -2545 3335 2703 1 734 1257 108 0 16 chr3 19620513 19620701 -139979082 - B2_Mm2 SINE B2 -9 186 2 1 734 404 305 146 9 chr3 19620763 19620975 -139978808 - L1ME3A LINE L1 -77 6096 5856 1 734 189 94 0 0 chr3 19622034 19622066 -139977717 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 1 734 374 313 53 62 chr3 19622598 19622816 -139976967 + MIR SINE MIR 3 233 -35 1 734 252 196 36 0 chr3 19623095 19623151 -139976632 - RMER12 LTR ERVK -100 1222 1165 1 734 5859 152 92 45 chr3 19623152 19623436 -139976347 - RMER12 LTR ERVK -56 1266 970 1 734 243 0 0 0 chr3 19623436 19623463 -139976320 + (CA)n Simple_repeat Simple_repeat 1 27 0 1 734 5859 152 92 45 chr3 19623463 19624387 -139975396 - RMER12 LTR ERVK -353 969 2 1 734 860 309 111 22 chr3 19624954 19625361 -139974422 - Tigger12c DNA MER2_type -40 694 252 1 734 258 56 0 0 chr3 19626661 19626697 -139973086 + (TG)n Simple_repeat Simple_repeat 2 37 0 1 734 423 328 104 22 chr3 19626702 19626970 -139972813 - B4 SINE B4 -2 290 1 1 734 185 234 75 45 chr3 19627290 19627357 -139972426 + L3 LINE CR1 2793 2861 -1628 1 734 583 307 63 59 chr3 19627856 19628126 -139971657 + LTR16B LTR ERVL 193 463 0 1 734 543 303 0 0 chr3 19628411 19628533 -139971250 + ID_B1 SINE B4 80 201 -23 1 734 243 0 0 0 chr3 19628535 19628562 -139971221 + (CAGA)n Simple_repeat Simple_repeat 2 28 0 1 734 211 208 0 0 chr3 19628569 19628617 -139971166 + GA-rich Low_complexity Low_complexity 2 49 0 1 734 243 315 0 0 chr3 19628825 19628879 -139970904 - B3A SINE B2 -121 77 24 1 734 492 324 118 47 chr3 19630000 19630365 -139969418 - LTR16B LTR ERVL -2 461 36 1 734 834 331 31 15 chr3 19631097 19631358 -139968425 + B4 SINE B4 1 265 -27 1 734 390 57 0 0 chr3 19631362 19631415 -139968368 + (CA)n Simple_repeat Simple_repeat 2 54 0 1 734 507 224 151 35 chr3 19631429 19631669 -139968114 - Lx7 LINE L1 -1801 5895 5631 1 734 340 286 69 28 chr3 19631726 19631870 -139967913 + MER5A1 DNA MER1_type 9 158 -8 1 734 182 254 132 15 chr3 19631887 19631955 -139967828 + MIRm SINE MIR 95 170 -106 1 734 310 355 142 8 chr3 19632724 19632971 -139966812 + B4A SINE B4 1 280 -12 1 734 322 194 0 31 chr3 19633018 19633102 -139966681 + GA-rich Low_complexity Low_complexity 2 82 0 1 734 513 0 0 0 chr3 19633102 19633159 -139966624 + (TG)n Simple_repeat Simple_repeat 2 58 0 1 734 322 194 0 31 chr3 19633159 19633170 -139966613 + polypurine Low_complexity Low_complexity 83 93 0 1 734 1006 265 69 62 chr3 19633285 19633691 -139966092 - MLT2D LTR ERVL -2 412 4 1 734 2088 91 9 51 chr3 19633925 19634261 -139965522 - RLTRETN_Mm LTR ERVK 0 322 1 1 734 6323 25 26 0 chr3 19634386 19635121 -139964662 - L1Md_F2 LINE L1 -2 6580 5827 1 734 180 0 0 0 chr3 19635333 19635353 -139964430 + (CTG)n Simple_repeat Simple_repeat 3 22 0 1 734 27 0 0 0 chr3 19635533 19635560 -139964223 + AT_rich Low_complexity Low_complexity 1 27 0 1 734 4667 153 59 45 chr3 19635560 19635724 -139964059 - Lx3C LINE L1 -2 6974 6809 1 734 1216 54 0 0 chr3 19635724 19635872 -139963911 + B1_Mus1 SINE Alu 1 148 0 1 734 4667 153 59 45 chr3 19635872 19636719 -139963064 - Lx3C LINE L1 -168 6808 5948 1 734 2332 194 85 47 chr3 19636773 19637302 -139962481 + Lx5 LINE L1 6498 7046 -4 1 734 412 289 128 86 chr3 19637473 19637856 -139961927 + Arthur1 DNA Tip100 3513 3911 -36 1 734 25 0 0 0 chr3 19638268 19638293 -139961490 + AT_rich Low_complexity Low_complexity 1 25 0 1 734 318 218 0 2 chr3 19638518 19638598 -139961185 + L1MA8 LINE L1 6092 6170 -142 1 734 3478 23 2 0 chr3 19638600 19638995 -139960788 - MTA_Mm LTR MaLR 0 396 1 1 734 280 243 58 116 chr3 19639985 19640106 -139959677 - PB1D10 SINE Alu -3 114 1 1 734 265 231 46 37 chr3 19640177 19640285 -139959498 + L1MA8 LINE L1 6180 6288 -3 1 734 278 287 99 0 chr3 19640487 19640588 -139959195 - PB1D7 SINE Alu -9 111 1 1 734 212 335 88 58 chr3 19641782 19641953 -139957830 + L2c LINE L2 3029 3204 -183 1 734 567 294 76 49 chr3 19641986 19642211 -139957572 + MER2 DNA MER2_type 7 237 -108 1 734 559 208 9 0 chr3 19642230 19642336 -139957447 + MTD LTR MaLR 1 107 -312 1 734 4323 122 15 71 chr3 19642558 19643346 -139956437 + RLTR13D6 LTR ERVK 1 744 -158 1 734 971 67 7 76 chr3 19643347 19643492 -139956291 + B1_Mus1 SINE Alu 14 148 0 1 734 224 0 0 61 chr3 19643492 19643525 -139956258 + (CAAAAA)n Simple_repeat Simple_repeat 6 36 0 2 734 675 203 73 20 chr3 19643525 19643676 -139956107 + RLTR13D6 LTR ERVK 863 1021 -2 1 734 2680 71 145 139 chr3 19643676 19644185 -139955598 - RLTR1B LTR ERV1 0 512 1 2 734 1612 21 11 0 chr3 19644476 19644665 -139955118 + B2_Mm1a SINE B2 2 192 -1 2 734 341 313 21 124 chr3 19646491 19646536 -139953247 + ID_B1 SINE B4 49 215 -9 2 734 641 223 0 78 chr3 19646536 19646677 -139953106 + B1_Mur1 SINE Alu 11 140 -9 2 734 483 155 0 0 chr3 19646677 19646761 -139953022 + (CAA)n Simple_repeat Simple_repeat 1 84 0 2 734 204 132 26 0 chr3 19648115 19648153 -139951630 + CT-rich Low_complexity Low_complexity 2 40 0 2 734 2295 98 67 18 chr3 19648228 19648570 -139951213 - RLTR10D LTR ERVK 0 359 1 2 734 7992 38 6 0 chr3 19648581 19649551 -139950232 + L1Md_F3 LINE L1 5609 6584 0 2 734 1083 63 14 7 chr3 19649842 19649986 -139949797 - B1_Mm SINE Alu 0 147 3 2 734 428 293 76 81 chr3 19649996 19650193 -139949590 - B3A SINE B2 -2 196 1 2 734 227 264 56 0 chr3 19650201 19650273 -139949510 - MLT1A1 LTR MaLR 0 408 333 2 734 1795 209 93 19 chr3 19650273 19650345 -139949438 - Lx6 LINE L1 -4 7456 7374 2 734 4316 40 0 2 chr3 19650345 19650849 -139948934 + RLTR1C LTR ERV1 1 503 0 2 734 1795 209 93 19 chr3 19650849 19651240 -139948543 - Lx6 LINE L1 -87 7373 6959 2 734 439 274 93 115 chr3 19651243 19651556 -139948227 - MLT1A1 LTR MaLR -59 306 1 2 734 212 297 139 35 chr3 19651971 19652086 -139947697 + L2b LINE L2 3246 3372 -3 2 734 304 307 106 62 chr3 19652739 19652899 -139946884 - MLT1A0 LTR MaLR -86 279 113 2 734 1818 231 20 8 chr3 19654036 19654433 -139945350 + MTD LTR MaLR 1 402 -17 2 734 492 32 0 0 chr3 19655586 19655648 -139944135 + (CA)n Simple_repeat Simple_repeat 1 62 0 2 734 203 61 0 29 chr3 19655663 19655697 -139944086 + (CAGA)n Simple_repeat Simple_repeat 2 34 0 2 734 246 32 0 0 chr3 19655708 19655739 -139944044 + (CA)n Simple_repeat Simple_repeat 2 32 0 2 734 559 287 96 27 chr3 19655796 19655998 -139943785 + B4A SINE B4 2 216 -76 2 734 243 88 0 0 chr3 19655998 19656032 -139943751 + (TAA)n Simple_repeat Simple_repeat 3 36 0 2 734 559 287 96 27 chr3 19656032 19656090 -139943693 + B4A SINE B4 217 280 -12 2 734 1002 248 42 99 chr3 19656457 19656811 -139942972 - ORR1E LTR MaLR 0 359 26 2 734 667 253 22 17 chr3 19657431 19657612 -139942171 - B3A SINE B2 -16 182 1 2 734 535 265 154 39 chr3 19657656 19657895 -139941888 + B4A SINE B4 2 273 -19 2 734 261 119 0 0 chr3 19657895 19657937 -139941846 + (CATA)n Simple_repeat Simple_repeat 2 43 0 2 734 535 265 154 39 chr3 19657937 19657956 -139941827 + B4A SINE B4 274 290 -2 2 734 213 238 0 0 chr3 19657964 19658044 -139941739 + GA-rich Low_complexity Low_complexity 1 80 0 2 734 306 417 24 16 chr3 19658303 19658554 -139941229 + AmnSINE1 SINE SINE 295 547 -28 2 734 185 119 0 23 chr3 19658940 19658983 -139940800 + (TTTTG)n Simple_repeat Simple_repeat 4 45 0 2 734 414 239 94 81 chr3 19659333 19659556 -139940227 + RLTR14 LTR ERV1 154 379 -3 2 734 2974 32 0 3 chr3 19659749 19660096 -139939687 + ORR1A0 LTR MaLR 1 346 0 2 735 254 320 56 28 chr3 19660926 19661106 -139938677 - L1MD1 LINE L1 -249 5993 5809 2 735 2033 168 120 24 chr3 19661133 19661590 -139938193 + RLTR16 LTR ERVK 1 501 -4 2 735 292 244 10 62 chr3 19661715 19661811 -139937972 + RMER3D-int LTR ERVK 100 190 -2652 2 735 389 169 21 43 chr3 19661968 19662061 -139937722 + RMER3D-int LTR ERVK 1021 1111 -1731 2 735 845 220 8 46 chr3 19662246 19662508 -139937275 + RMER3D-int LTR ERVK 1112 1363 -1479 2 735 4636 148 66 96 chr3 19662505 19662931 -139936852 + MYSERV16_I-int LTR ERVK 1101 1513 -813 2 735 189 0 0 0 chr3 19662931 19662952 -139936831 + (TG)n Simple_repeat Simple_repeat 2 22 0 2 735 4636 148 66 96 chr3 19662952 19663787 -139935996 + MYSERV16_I-int LTR ERVK 1514 2324 -2 2 735 2133 175 122 9 chr3 19663789 19664238 -139935545 + RLTR16 LTR ERVK 1 500 -5 2 735 909 248 191 39 chr3 19664312 19665358 -139934425 - L1MDa LINE L1 -3016 3521 2317 2 735 235 217 0 0 chr3 19665388 19665434 -139934349 - L1MDa LINE L1 -5819 814 769 2 735 479 299 59 55 chr3 19665514 19665918 -139933865 - L1MDa LINE L1 -6227 406 1 2 735 968 128 21 0 chr3 19665920 19666061 -139933722 + B1_Mur4 SINE Alu 1 144 -6 2 735 459 0 0 0 chr3 19666074 19666125 -139933658 + (CA)n Simple_repeat Simple_repeat 2 52 0 2 735 2559 164 45 133 chr3 19666296 19666966 -139932817 + RMER19C LTR ERVK 1 611 0 2 735 1652 89 8 8 chr3 19666968 19667205 -139932578 + L1_Mus3 LINE L1 6396 6632 -6 2 735 385 400 11 31 chr3 19667217 19667408 -139932375 + L3 LINE CR1 4297 4483 -6 2 735 231 36 0 0 chr3 19667486 19667514 -139932269 + (TAA)n Simple_repeat Simple_repeat 2 29 0 2 735 351 242 248 8 chr3 19667634 19667767 -139932016 - LTR82A LTR ERVL -125 747 583 2 735 414 0 0 0 chr3 19667769 19667815 -139931968 + (TAA)n Simple_repeat Simple_repeat 2 47 0 2 735 322 322 199 48 chr3 19667815 19667971 -139931812 - LTR82B Low_complexity ERVL -288 542 348 2 735 2260 137 43 14 chr3 19667971 19668342 -139931441 - ORR1C2 LTR MaLR 0 384 3 2 735 322 322 199 48 chr3 19668342 19668397 -139931386 - LTR82B Low_complexity ERVL -483 347 298 2 735 270 0 0 0 chr3 19668404 19668434 -139931349 + (A)n Simple_repeat Simple_repeat 1 30 0 2 735 387 0 0 0 chr3 19668562 19668605 -139931178 + (TG)n Simple_repeat Simple_repeat 2 44 0 2 735 282 261 129 11 chr3 19668670 19668763 -139931020 + RLTR12B LTR ERVK 47 150 -378 2 735 413 290 55 68 chr3 19669724 19670088 -139929695 + RLTR12B LTR ERVK 94 485 -43 2 735 272 322 58 25 chr3 19670203 19670324 -139929459 + L2a LINE L2 3051 3175 -251 2 735 228 259 9 26 chr3 19670717 19670832 -139928951 + (CATATA)n Simple_repeat Simple_repeat 6 118 0 2 735 283 313 30 90 chr3 19671149 19671349 -139928434 - B2_Mm2 SINE B2 0 195 8 2 735 2155 294 61 16 chr3 19671614 19672462 -139927321 + Lx8 LINE L1 6588 7473 0 2 735 1724 49 0 13 chr3 19672617 19672843 -139926940 + L1Md_A LINE L1 6360 6582 0 2 735 2319 123 0 0 chr3 19672937 19673263 -139926520 - ORR1A3 LTR MaLR 0 326 1 2 735 1023 246 174 14 chr3 19673831 19674119 -139925664 + MTD LTR MaLR 1 334 -85 2 735 236 189 0 19 chr3 19674137 19674191 -139925592 + (TTTG)n Simple_repeat Simple_repeat 2 54 0 2 735 349 139 30 62 chr3 19674199 19674275 -139925508 + MTD LTR MaLR 303 419 0 2 735 226 253 96 0 chr3 19674873 19674956 -139924827 + Charlie9 DNA MER1_type 2666 2756 -1 2 735 1677 234 71 48 chr3 19674973 19675494 -139924289 + MT2A LTR ERVL 1 533 0 2 735 213 154 0 0 chr3 19676602 19676641 -139923142 + (TAGA)n Simple_repeat Simple_repeat 4 42 0 2 735 2198 273 20 34 chr3 19676644 19677276 -139922507 + Lx5 LINE L1 6454 7049 -1 2 735 867 247 12 0 chr3 19677401 19677567 -139922216 + B3A SINE B2 1 168 -30 2 735 261 0 0 0 chr3 19677599 19677628 -139922155 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 2 735 829 275 7 167 chr3 19677640 19677744 -139922039 + B4 SINE B4 1 88 -204 2 735 553 248 72 0 chr3 19677744 19677869 -139921914 + B1_Mur2 SINE Alu 2 135 -14 2 735 495 107 0 0 chr3 19677869 19677944 -139921839 + (CAGT)n Simple_repeat Simple_repeat 4 78 0 2 735 829 275 7 167 chr3 19677944 19678126 -139921657 + B4 SINE B4 89 241 -51 2 735 1525 126 16 86 chr3 19678126 19678429 -139921354 + RMER15 LTR ERVL 4 285 -290 2 735 391 297 81 7 chr3 19679248 19679397 -139920386 + MamRep605 Unknown Unknown 13 172 -704 2 735 333 236 272 31 chr3 19679529 19679691 -139920092 + MLT1A1 LTR MaLR 1 201 -207 2 735 286 291 109 0 chr3 19680293 19680403 -139919380 + LTR33 LTR ERVL 383 504 -11 2 735 3051 76 14 5 chr3 19681541 19681965 -139917818 + L1_Mus1 LINE L1 5790 6217 -350 2 735 1959 58 4 0 chr3 19681965 19682254 -139917529 + L1_Mus1 LINE L1 6320 6567 0 2 735 696 182 52 7 chr3 19682563 19682782 -139917001 - RLTR28 LTR ERVL 0 524 338 2 735 518 0 16 0 chr3 19683291 19683353 -139916430 + (GA)n Simple_repeat Simple_repeat 1 63 0 2 735 1750 152 41 17 chr3 19683407 19683702 -139916081 - RLTR41 LTR ERV1 0 446 145 2 735 761 287 82 79 chr3 19683737 19684028 -139915755 + B4A SINE B4 1 292 0 2 735 379 255 48 48 chr3 19684313 19684416 -139915367 + PB1D10 SINE Alu 1 103 -14 2 735 729 245 57 38 chr3 19684835 19685047 -139914736 - B3 SINE B2 0 216 1 2 735 604 258 129 16 chr3 19685078 19685271 -139914512 - B3 SINE B2 0 216 2 2 735 864 340 93 32 chr3 19685330 19685781 -139914002 + MLT2B1 LTR ERVL 15 496 -24 2 735 213 39 0 0 chr3 19685781 19685807 -139913976 + (TCCC)n Simple_repeat Simple_repeat 2 27 0 2 735 864 340 93 32 chr3 19685807 19685826 -139913957 + MLT2B1 LTR ERVL 497 514 -6 2 735 2258 39 7 21 chr3 19686176 19686462 -139913321 - L1Md_F2 LINE L1 0 6582 6301 2 735 282 125 0 0 chr3 19686918 19686966 -139912817 + (TCTCCC)n Simple_repeat Simple_repeat 5 52 0 2 735 564 91 0 0 chr3 19686970 19687058 -139912725 + (TG)n Simple_repeat Simple_repeat 1 88 0 2 735 567 283 188 13 chr3 19687066 19687295 -139912488 - B4A SINE B4 -23 269 1 2 735 182 327 142 0 chr3 19687335 19687448 -139912335 + L2a LINE L2 3267 3395 -31 2 735 351 315 146 0 chr3 19689781 19689911 -139909872 - MER58B DNA MER1_type -17 324 176 2 735 2332 106 23 3 chr3 19689911 19690261 -139909522 + IAPEY2_LTR LTR ERVK 1 357 0 2 735 214 296 56 0 chr3 19690334 19690405 -139909378 + L2a LINE L2 3331 3405 -21 2 735 618 270 113 35 chr3 19690483 19690906 -139908877 + L1MB8 LINE L1 5714 6169 -9 2 735 2415 101 3 0 chr3 19691082 19691408 -139908375 + ORR1A2 LTR MaLR 1 327 0 2 735 22 35 0 0 chr3 19691621 19691650 -139908133 + AT_rich Low_complexity Low_complexity 1 29 0 2 735 288 0 0 0 chr3 19691671 19691703 -139908080 + (T)n Simple_repeat Simple_repeat 1 32 0 2 735 600 243 28 42 chr3 19691840 19691982 -139907801 + B1F1 SINE Alu 10 149 0 2 735 466 189 68 20 chr3 19692003 19692149 -139907634 + L1ME2z LINE L1 6143 6295 -149 2 735 371 117 13 25 chr3 19692868 19692947 -139906836 - L1Md_F2 LINE L1 0 6582 6505 2 735 452 289 114 31 chr3 19692952 19693206 -139906577 + L1MEg LINE L1 883 1157 -5085 2 735 26 30 0 0 chr3 19693345 19693378 -139906405 + AT_rich Low_complexity Low_complexity 1 33 0 2 735 490 296 65 57 chr3 19693380 19693642 -139906141 + L1MEg LINE L1 4473 4736 -1410 2 735 377 349 152 11 chr3 19693645 19693909 -139905874 + L1MC LINE L1 5287 5587 -757 3 735 482 228 48 29 chr3 19694297 19694401 -139905382 - B1F SINE Alu -43 106 1 3 735 398 332 134 14 chr3 19694484 19694707 -139905076 - L1M5 LINE L1 -1163 4983 4734 3 735 379 275 129 93 chr3 19694762 19695194 -139904589 - RMER20B LTR ERVK 0 516 63 3 735 4416 108 25 35 chr3 19695231 19695977 -139903806 - RMER17A LTR ERVK 0 751 13 3 735 347 152 34 0 chr3 19696174 19696233 -139903550 - RMER20B LTR ERVK -566 61 1 3 735 984 30 0 36 chr3 19696385 19696522 -139903261 + L1_Mus1 LINE L1 6436 6567 0 3 735 409 307 122 36 chr3 19697054 19697250 -139902533 - MIRb SINE MIR -8 260 48 3 735 2677 170 87 25 chr3 19697347 19697877 -139901906 - RLTR12A LTR ERVK -5 563 1 3 735 550 187 0 164 chr3 19698263 19698391 -139901392 + PB1D10 SINE Alu 10 116 -1 3 735 242 289 7 71 chr3 19700631 19700718 -139899065 - L2b LINE L2 -181 3206 3118 3 735 508 275 114 40 chr3 19700752 19700928 -139898855 + B3 SINE B2 1 192 -24 3 735 1582 148 184 9 chr3 19700928 19701255 -139898528 - ORR1C2 LTR MaLR 0 384 1 3 735 508 275 114 40 chr3 19701255 19701279 -139898504 + B3 SINE B2 193 216 0 3 735 6770 102 24 7 chr3 19701283 19702273 -139897510 - L1_Mus4 LINE L1 -6 6630 5622 3 735 3429 10 31 0 chr3 19702273 19702657 -139897126 + MTA_Mm LTR MaLR 1 396 0 3 735 6770 149 15 10 chr3 19702657 19702962 -139896821 - L1_Mus4 LINE L1 -262 5621 5314 3 735 4683 78 31 9 chr3 19702961 19703703 -139896080 - MusHAL1 LINE L1 -1469 1243 486 3 735 11167 162 24 44 chr3 19703704 19706135 -139893648 + ETnERV2-int LTR ERVK 1278 3659 -3747 3 735 1698 140 30 103 chr3 19706156 19706553 -139893230 + RLTR9A LTR ERVK 1 368 0 3 735 6911 157 30 9 chr3 19706553 19708771 -139891012 + Lx3C LINE L1 4683 6956 -20 3 735 229 352 0 79 chr3 19708966 19709080 -139890703 - MLT1C LTR MaLR -349 118 14 3 735 768 301 145 16 chr3 19709091 19709456 -139890327 + MER31A LTR ERV1 24 435 -50 3 735 457 347 59 92 chr3 19709557 19709928 -139889855 + ORR1E LTR MaLR 1 359 0 3 735 513 281 82 66 chr3 19711827 19712209 -139887574 + MLT1D LTR MaLR 4 370 -20 3 735 180 102 20 39 chr3 19712409 19712460 -139887323 + T-rich Low_complexity Low_complexity 2 51 0 3 735 289 268 81 20 chr3 19712461 19712560 -139887223 - PB1D10 SINE Alu 0 117 13 3 735 227 185 19 0 chr3 19712578 19712632 -139887151 + MLT1D LTR MaLR 336 390 -18 3 735 401 196 127 71 chr3 19713080 19713206 -139886577 - B4 SINE B4 -14 278 146 3 735 1396 88 73 0 chr3 19713414 19713619 -139886164 + Lx2A1 LINE L1 6639 6858 -150 3 735 567 43 0 0 chr3 19713619 19713689 -139886094 + (GA)n Simple_repeat Simple_repeat 1 70 0 3 735 3425 77 32 4 chr3 19713689 19714158 -139885625 + RLTR45 LTR ERVK 1 482 0 3 735 4049 77 107 17 chr3 19714158 19714793 -139884990 + RLTR45-int LTR ERVK 1 692 -6552 3 735 1070 58 0 0 chr3 19715096 19715234 -139884549 + RLTR45-int LTR ERVK 681 818 -6426 3 735 254 239 22 22 chr3 19715635 19715725 -139884058 + MMTV-int LTR ERVK 2415 2504 -4749 3 735 10942 43 49 12 chr3 19716019 19717843 -139881940 + RLTR45-int LTR ERVK 1322 3212 -4032 3 735 3629 89 35 28 chr3 19717813 19718416 -139881367 + RLTR45-int LTR ERVK 3380 3986 -3258 3 735 4319 79 39 30 chr3 19718409 19719381 -139880402 + RLTR45-int LTR ERVK 4298 6072 -1172 3 735 2034 104 10 3 chr3 19719403 19719703 -139880080 + RLTR13B1 LTR ERVK 207 508 -385 3 735 7320 42 3 4 chr3 19719703 19720616 -139879167 + RLTR45-int LTR ERVK 6333 7244 0 3 735 3406 73 39 2 chr3 19720616 19721080 -139878703 + RLTR45 LTR ERVK 1 481 -1 3 735 198 0 0 0 chr3 19721080 19721102 -139878681 + (GA)n Simple_repeat Simple_repeat 2 23 0 3 735 387 0 0 0 chr3 19721102 19721144 -139878639 + (TG)n Simple_repeat Simple_repeat 1 43 0 3 735 652 107 17 43 chr3 19721145 19721262 -139878521 + Lx2A LINE L1 6886 6999 -9 3 735 1047 76 76 0 chr3 19723120 19723252 -139876531 + B1_Mus2 SINE Alu 1 142 -5 3 735 1927 269 48 70 chr3 19723281 19723715 -139876068 - Lx5 LINE L1 -8 7042 6595 3 735 351 0 0 0 chr3 19723715 19723754 -139876029 + (TTA)n Simple_repeat Simple_repeat 1 39 0 3 735 1884 66 0 0 chr3 19723754 19723981 -139875802 - L1_Mus1 LINE L1 -10 6557 6331 3 735 1927 269 48 70 chr3 19723981 19724128 -139875655 - Lx5 LINE L1 -456 6594 6474 3 735 556 186 25 8 chr3 19724158 19724277 -139875506 - RMER1B Other Other -1 1065 945 3 735 447 269 94 30 chr3 19724483 19724717 -139875066 - L1_Mur3 LINE L1 -1605 4275 4027 3 735 311 296 54 24 chr3 19725088 19725254 -139874529 - L1M5 LINE L1 -758 5436 5266 3 735 756 238 64 86 chr3 19725560 19725873 -139873910 + MTD LTR MaLR 6 311 -108 3 735 5573 94 48 32 chr3 19725890 19726616 -139873167 - L1_Mus4 LINE L1 0 6636 5906 3 735 6876 58 10 1 chr3 19726616 19727417 -139872366 + RLTR13C2 LTR ERVK 1 808 0 3 735 5573 94 48 32 chr3 19727417 19727505 -139872278 - L1_Mus4 LINE L1 -731 5905 5809 3 735 347 264 144 32 chr3 19727993 19728118 -139871665 - RSINE1 SINE B4 -25 140 2 3 735 344 193 63 74 chr3 19729075 19729170 -139870613 - B1F1 SINE Alu -51 98 5 3 735 242 289 51 82 chr3 19729092 19729190 -139870593 - B4A SINE B4 -125 167 73 3 735 1444 275 142 36 chr3 19729278 19729995 -139869788 - L1MD3 LINE L1 0 7995 7203 3 735 297 277 109 0 chr3 19730709 19730810 -139868973 - PB1D10 SINE Alu -1 116 5 3 735 525 250 103 30 chr3 19730852 19731017 -139868766 - B4A SINE B4 -33 259 83 3 735 284 253 171 38 chr3 19731865 19732118 -139867665 - L1M6 LINE L1 -4772 1724 1610 3 735 24 0 0 0 chr3 19732529 19732553 -139867230 + AT_rich Low_complexity Low_complexity 1 24 0 3 735 436 203 0 0 chr3 19732596 19732670 -139867113 + B1_Mur4 SINE Alu 67 140 -10 3 735 252 0 0 0 chr3 19732917 19732945 -139866838 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 3 735 241 343 30 0 chr3 19733185 19733252 -139866531 - RSINE1 SINE B4 -90 75 7 3 735 181 305 120 38 chr3 19734195 19734328 -139865455 - L2c LINE L2 -3 3384 3241 3 735 188 243 108 0 chr3 19735400 19735437 -139864346 + MIRm SINE MIR 211 251 -25 3 735 189 0 0 0 chr3 19735627 19735648 -139864135 + (A)n Simple_repeat Simple_repeat 1 21 0 3 735 180 111 0 0 chr3 19736460 19736487 -139863296 + (TTTTC)n Simple_repeat Simple_repeat 3 29 0 3 735 285 371 102 15 chr3 19736578 19736775 -139863008 - L2c LINE L2 -731 2688 2475 3 735 408 40 0 0 chr3 19737029 19737079 -139862704 + (TC)n Simple_repeat Simple_repeat 2 51 0 3 735 316 68 33 17 chr3 19737141 19737201 -139862582 + (CAAAA)n Simple_repeat Simple_repeat 1 61 0 3 735 494 154 143 9 chr3 19737267 19737372 -139862411 - RLTR18B LTR ERVK -107 405 287 3 735 3965 129 57 2 chr3 19737374 19737988 -139861795 + L1VL4 LINE L1 190 837 -5465 3 735 8343 128 44 62 chr3 19737987 19740709 -139859074 + L1_Mur1 LINE L1 55 2742 -1170 3 735 4353 137 84 6 chr3 19740711 19741591 -139858192 + Lx2 LINE L1 5942 6999 -1 3 735 1247 164 14 0 chr3 19741612 19741820 -139857963 - RLTR18B LTR ERVK -232 280 70 3 735 1892 137 110 108 chr3 19741820 19742294 -139857489 - IAPLTR2_Mm LTR ERVK 0 475 1 3 735 7476 64 9 14 chr3 19742294 19743257 -139856526 - IAPEz-int LTR ERVK 0 6481 5524 3 735 2048 28 5 0 chr3 19743336 19743578 -139856205 - IAPEz-int LTR ERVK -955 5526 5290 3 735 416 117 77 13 chr3 19743593 19743671 -139856112 - IAPEy-int LTR ERVK -7430 83 1 3 735 1088 88 64 7 chr3 19743671 19743849 -139855934 - IAPLTR2b LTR ERVK 0 357 146 3 735 416 270 35 43 chr3 19744628 19744744 -139855039 - PB1D10 SINE Alu 0 117 3 3 735 291 188 219 0 chr3 19744777 19744841 -139854942 + ID2 SINE ID 3 80 -3 3 735 1154 261 123 12 chr3 19744992 19745318 -139854465 - MTE2b LTR MaLR -13 366 5 3 735 194 277 150 9 chr3 19745405 19745518 -139854265 - MIRb SINE MIR -80 188 60 3 735 282 264 118 76 chr3 19746093 19746379 -139853404 + L1M5 LINE L1 5541 5830 -2052 3 735 292 161 79 93 chr3 19746401 19746508 -139853275 + B1F1 SINE Alu 2 149 0 3 735 495 180 28 92 chr3 19746899 19747040 -139852743 + Lx4B LINE L1 6919 7050 -8 3 735 4746 115 81 12 chr3 19747093 19747850 -139851933 + RMER17D2 LTR ERVK 1 809 0 3 735 188 226 94 0 chr3 19749056 19749109 -139850674 - MIR SINE MIR -3 259 202 3 735 279 281 48 23 chr3 19749613 19749725 -139850058 + PB1D10 SINE Alu 16 136 -13 3 735 946 32 0 0 chr3 19749788 19749911 -139849872 - B2_Mm1t SINE B2 0 193 71 3 735 323 47 0 0 chr3 19749943 19749986 -139849797 + L1Md_T LINE L1 2150 2192 -3691 3 735 29293 32 0 0 chr3 19749998 19753435 -139846348 + L1Md_T LINE L1 2150 5586 -297 3 735 9520 8 0 0 chr3 19753435 19754430 -139845353 + L1Md_T LINE L1 5587 6581 -1 3 735 1586 50 0 0 chr3 19754430 19754609 -139845174 - B2_Mm1t SINE B2 -14 179 1 3 735 596 282 22 33 chr3 19757711 19757891 -139841892 - MLT1A1 LTR MaLR -4 404 227 3 735 183 328 0 33 chr3 19758084 19758144 -139841639 - MIRm SINE MIR -16 260 203 3 735 213 39 0 0 chr3 19758357 19758383 -139841400 + (TTCA)n Simple_repeat Simple_repeat 1 26 0 3 735 5845 53 27 30 chr3 19759248 19759983 -139839800 + L1Md_F2 LINE L1 5838 6570 -12 3 735 189 294 0 19 chr3 19760075 19760127 -139839656 + MIRb SINE MIR 123 173 -95 3 735 236 311 53 53 chr3 19761191 19761286 -139838497 - ORR1B1 LTR MaLR -196 198 104 3 735 1580 200 21 109 chr3 19761563 19761984 -139837799 + ORR1C2 LTR MaLR 1 384 0 3 735 617 172 0 0 chr3 19762090 19762189 -139837594 - B1_Mur2 SINE Alu -38 111 13 3 735 2293 197 9 9 chr3 19762243 19762664 -139837119 + MTC LTR MaLR 1 421 0 3 735 977 154 0 0 chr3 19763103 19763239 -139836544 - B1_Mus1 SINE Alu -12 136 1 3 735 213 308 0 15 chr3 19764522 19764588 -139835195 + MIR3 SINE MIR 15 79 -129 3 735 396 212 50 0 chr3 19764708 19764788 -139834995 + B4A SINE B4 3 86 -206 3 735 321 316 25 34 chr3 19764805 19764923 -139834860 - Lx9 LINE L1 -916 6728 6612 3 735 571 309 0 0 chr3 19764926 19765078 -139834705 + Lx9 LINE L1 6731 6882 -762 3 735 532 326 90 30 chr3 19765086 19765320 -139834463 + Lx8 LINE L1 7080 7327 -146 3 735 198 71 0 0 chr3 19765322 19765350 -139834433 + (TAGG)n Simple_repeat Simple_repeat 4 31 0 3 735 835 225 0 34 chr3 19765533 19765708 -139834075 - B3 SINE B2 -1 215 47 3 735 297 270 261 31 chr3 19766169 19766364 -139833419 + RMER21B LTR ERV1 328 567 -275 3 735 429 290 66 37 chr3 19766461 19766597 -139833186 - B1F2 SINE Alu -9 140 1 3 735 1620 2 0 0 chr3 19766601 19767129 -139832654 + (TG)n Simple_repeat Simple_repeat 1 528 0 3 735 486 0 0 0 chr3 19767129 19767182 -139832601 + (GA)n Simple_repeat Simple_repeat 1 54 0 3 735 410 355 138 32 chr3 19767226 19767479 -139832304 - B4A SINE B4 -11 281 2 3 735 2028 226 129 1 chr3 19767562 19768079 -139831704 + RMER1B Other Other 205 855 -211 4 735 2190 131 117 10 chr3 19768081 19768475 -139831308 + BGLII_B LTR ERVK 6 441 0 4 735 441 141 42 0 chr3 19768476 19768547 -139831236 + RMER1B Other Other 860 933 -133 4 735 4256 74 11 2 chr3 19768581 19769111 -139830672 - L1_Mus2 LINE L1 -1 6565 6031 4 735 9423 112 18 2 chr3 19769111 19771046 -139828737 - L1Md_F LINE L1 -3319 2564 598 4 735 585 196 87 0 chr3 19771047 19771185 -139828598 + RMER1B Other Other 913 1062 -4 4 735 378 0 0 0 chr3 19771670 19771712 -139828071 + (GA)n Simple_repeat Simple_repeat 2 43 0 4 735 207 0 0 0 chr3 19772847 19772870 -139826913 + (TTTTTG)n Simple_repeat Simple_repeat 4 26 0 4 735 19279 92 17 39 chr3 19773080 19773764 -139826019 + L1VL2 LINE L1 584 1272 -5362 4 735 1245 82 0 0 chr3 19773764 19773910 -139825873 + B1_Mus1 SINE Alu 2 147 -1 4 735 19279 162 22 43 chr3 19773910 19774317 -139825466 + L1VL2 LINE L1 1267 1652 -4234 4 735 541 70 0 0 chr3 19774317 19774388 -139825395 + B2_Mm2 SINE B2 2 72 -123 4 735 180 0 0 0 chr3 19774388 19774408 -139825375 + (TAAA)n Simple_repeat Simple_repeat 3 22 0 4 735 19279 159 20 37 chr3 19774408 19777749 -139822034 + L1VL2 LINE L1 1653 5007 -879 4 735 1972 105 38 56 chr3 19777752 19778094 -139821689 + Lx LINE L1 6313 6648 -6 4 735 900 111 13 7 chr3 19778099 19778253 -139821530 + (GGAA)n Simple_repeat Simple_repeat 3 157 0 4 735 917 206 88 0 chr3 19778618 19778812 -139820971 - B3 SINE B2 -5 211 1 4 735 194 293 52 26 chr3 19779957 19780034 -139819749 + L2b LINE L2 3263 3341 -34 4 735 875 209 58 5 chr3 19780224 19780412 -139819371 + B3A SINE B2 1 198 0 4 735 270 81 0 0 chr3 19780515 19780552 -139819231 + (TGAA)n Simple_repeat Simple_repeat 4 40 0 4 735 248 208 38 0 chr3 19780808 19780861 -139818922 - ORR1C1 LTR MaLR 0 378 324 4 735 255 312 14 41 chr3 19781178 19781325 -139818458 + L1M5 LINE L1 2300 2442 -3773 4 735 1288 97 11 0 chr3 19781856 19782032 -139817751 + B2_Mm1t SINE B2 2 179 -14 4 735 252 200 0 35 chr3 19782098 19782155 -139817628 + B2_Mm2 SINE B2 47 101 -94 4 735 1070 90 14 0 chr3 19782202 19782346 -139817437 + B1_Mus2 SINE Alu 2 147 0 4 735 441 0 0 0 chr3 19782393 19782442 -139817341 + (GGAA)n Simple_repeat Simple_repeat 4 52 0 4 735 900 183 45 15 chr3 19782442 19782742 -139817041 - ORR1C1 LTR MaLR -64 314 6 4 735 915 181 58 11 chr3 19782794 19782984 -139816799 + URR1B DNA MER1_type 1 199 -26 4 735 799 277 19 10 chr3 19783619 19783868 -139815915 + B4A SINE B4 1 257 -35 4 735 399 41 0 0 chr3 19783868 19783917 -139815866 + (GA)n Simple_repeat Simple_repeat 1 49 0 4 735 535 117 11 11 chr3 19783918 19783949 -139815834 + (GGAGAA)n Simple_repeat Simple_repeat 6 36 0 4 735 1191 78 0 22 chr3 19783949 19784133 -139815650 + (GAA)n Simple_repeat Simple_repeat 1 180 0 4 735 535 117 11 11 chr3 19784133 19784196 -139815587 + (GGAGAA)n Simple_repeat Simple_repeat 1 64 0 4 735 1050 117 6 11 chr3 19784196 19784377 -139815406 + (GAA)n Simple_repeat Simple_repeat 1 180 0 4 735 8572 137 17 20 chr3 19784970 19786772 -139813011 - Lx2 LINE L1 -52 6945 5150 4 735 1645 80 5 0 chr3 19786773 19786997 -139812786 - ORR1A2 LTR MaLR -41 286 62 4 735 4665 153 43 18 chr3 19787014 19787841 -139811942 - RMER13A LTR ERVK -12 848 1 4 735 376 114 29 0 chr3 19787841 19787907 -139811876 - ORR1A2 LTR MaLR -259 68 1 4 735 540 261 1 4 chr3 19787908 19788029 -139811754 - RSINE1 SINE B4 -42 123 5 4 735 347 319 25 41 chr3 19788073 19788194 -139811589 - LTR80A LTR ERVL -123 460 342 4 735 22 0 0 0 chr3 19788247 19788269 -139811514 + AT_rich Low_complexity Low_complexity 1 22 0 4 735 272 154 0 156 chr3 19788773 19788850 -139810933 - RLTR33 LTR ERVK -157 521 457 4 735 1918 171 85 8 chr3 19788853 19789218 -139810565 + ORR1B1 LTR MaLR 1 393 -1 4 735 1239 222 147 41 chr3 19789218 19789874 -139809909 + ORR1A3-int LTR MaLR 12 775 -734 4 735 31 26 0 0 chr3 19790093 19790131 -139809652 + AT_rich Low_complexity Low_complexity 1 38 0 4 735 616 289 66 39 chr3 19790614 19790873 -139808910 + B4A SINE B4 2 267 -25 4 735 1032 145 93 5 chr3 19790875 19791069 -139808714 + URR1B DNA MER1_type 5 215 -10 4 735 2086 157 65 3 chr3 19791080 19791451 -139808332 - ORR1B1 LTR MaLR 0 394 1 4 735 214 359 0 0 chr3 19791762 19791826 -139807957 + RSINE1 SINE B4 100 163 -2 4 736 1257 103 11 5 chr3 19792032 19792218 -139807565 + B2_Mm1t SINE B2 2 188 -5 4 736 300 341 22 0 chr3 19793387 19793478 -139806305 + ID_B1 SINE B4 86 178 -46 4 736 387 258 43 0 chr3 19793512 19793605 -139806178 - ID_B1 SINE B4 -47 177 81 4 736 313 355 32 0 chr3 19793743 19793867 -139805916 + ID_B1 SINE B4 78 205 -19 4 736 671 46 0 0 chr3 19795855 19795942 -139803841 + B2_Mm2 SINE B2 1 87 -108 4 736 25 31 0 0 chr3 19795942 19795974 -139803809 + AT_rich Low_complexity Low_complexity 1 32 0 4 736 229 262 75 0 chr3 19796726 19796806 -139802977 - B1F SINE Alu -31 118 33 4 736 1564 173 79 9 chr3 19796969 19797284 -139802499 + RMER3D-int LTR ERVK 2506 2842 0 4 736 1577 206 239 25 chr3 19797284 19797774 -139802009 + RLTR17 LTR ERVK 1 595 -97 4 736 6926 133 88 19 chr3 19797775 19798479 -139801304 - Lx3C LINE L1 -393 6583 5826 4 736 4918 46 5 2 chr3 19798479 19799064 -139800719 + LTRIS_Mus LTR ERV1 1 587 0 4 736 6926 127 55 119 chr3 19799064 19799553 -139800230 - Lx3C LINE L1 -58 5828 5371 4 736 1149 61 0 7 chr3 19799553 19799701 -139800082 - B1_Mus2 SINE Alu 0 147 1 4 736 6926 127 55 119 chr3 19799701 19799820 -139799963 - Lx3C LINE L1 -516 5370 5235 4 736 257 75 25 0 chr3 19799820 19799860 -139799923 + (TAGA)n Simple_repeat Simple_repeat 2 42 0 4 736 6926 127 55 119 chr3 19799860 19800134 -139799649 - Lx3C LINE L1 -652 5234 4940 4 736 8089 64 12 3 chr3 19800134 19801148 -139798635 + RLTR13D2 LTR ERVK 1 1023 0 4 736 6926 127 55 119 chr3 19801148 19801413 -139798370 - Lx3C LINE L1 -947 4939 4686 4 736 198 0 0 0 chr3 19801421 19801443 -139798340 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 4 736 638 45 0 11 chr3 19801443 19801523 -139798260 - B1_Mm SINE Alu -8 139 60 4 736 6926 127 55 119 chr3 19801523 19801711 -139798072 - Lx3C LINE L1 -1201 4685 4496 4 736 911 198 65 20 chr3 19803417 19803618 -139796165 - B3 SINE B2 -6 210 1 4 736 234 116 139 0 chr3 19804270 19804313 -139795470 - B3 SINE B2 -167 49 1 4 736 2804 57 16 0 chr3 19805131 19805517 -139794266 + MTB LTR MaLR 3 394 -6 4 736 1147 52 0 0 chr3 19805518 19805654 -139794129 + B1_Mus1 SINE Alu 1 136 -12 4 736 882 29 0 0 chr3 19805671 19805776 -139794007 + (GAAA)n Simple_repeat Simple_repeat 4 108 0 4 736 5913 67 18 3 chr3 19805790 19806677 -139793106 + ORR1A1-int LTR MaLR 2 901 -891 4 736 214 143 20 20 chr3 19807263 19807313 -139792470 + A-rich Low_complexity Low_complexity 3 52 0 4 736 1166 83 12 0 chr3 19807314 19807482 -139792301 + B2_Mm1t SINE B2 2 171 -22 4 736 371 107 0 0 chr3 19807516 19807572 -139792211 + B2_Mm2 SINE B2 46 101 -94 4 736 22 35 0 0 chr3 19807596 19807625 -139792158 + AT_rich Low_complexity Low_complexity 1 29 0 4 736 341 307 42 73 chr3 19808269 19808434 -139791349 + RSINE1 SINE B4 2 161 -4 4 736 2367 204 57 46 chr3 19809959 19810628 -139789155 + ORR1B1-int LTR MaLR 569 1244 -265 4 736 1495 50 0 25 chr3 19810628 19810855 -139788928 - L1Md_F3 LINE L1 0 6584 6381 4 736 4835 45 0 2 chr3 19810903 19811483 -139788300 + L1Md_T LINE L1 6004 6582 0 4 736 26 0 0 0 chr3 19811887 19811913 -139787870 + AT_rich Low_complexity Low_complexity 1 26 0 4 736 6894 28 5 3 chr3 19812185 19813149 -139786634 - L1Md_F3 LINE L1 -193 6391 5425 4 736 1202 150 105 4 chr3 19813149 19813397 -139786386 + ORR1B1-int LTR MaLR 1237 1509 0 4 736 2097 142 116 0 chr3 19813397 19813750 -139786033 + ORR1B1 LTR MaLR 1 394 0 4 736 491 0 0 17 chr3 19814989 19815049 -139784734 + (GA)n Simple_repeat Simple_repeat 2 60 0 4 736 813 164 77 62 chr3 19815093 19815288 -139784495 + RLTR16 LTR ERVK 1 198 -307 4 736 1083 219 64 62 chr3 19815325 19815942 -139783841 - RMER12 LTR ERVK -5 1317 580 4 736 7695 80 27 9 chr3 19815978 19817162 -139782621 - L1_Mus3 LINE L1 0 6638 5440 4 736 2417 182 80 4 chr3 19817162 19817702 -139782081 - RMER12 LTR ERVK -741 581 1 4 736 2917 36 0 0 chr3 19817760 19818097 -139781686 - IAPLTR1a_Mm LTR ERVK 0 337 1 4 736 21526 14 2 0 chr3 19818097 19820450 -139779333 - IAPEz-int LTR ERVK 0 6481 4123 4 736 953 80 24 0 chr3 19820452 19820577 -139779206 - IAPEz-int LTR ERVK -2770 4910 4783 4 736 1834 123 4 4 chr3 19820572 19820834 -139778949 - IAPEz-int LTR ERVK -5183 2497 2236 4 736 454 66 0 32 chr3 19820823 19820886 -139778897 - IAPEz-int LTR ERVK -5062 1419 1359 4 736 5047 62 0 54 chr3 19820886 19821586 -139778197 - IAPEz-int LTR ERVK -5819 662 1 4 736 2593 28 0 0 chr3 19821587 19821913 -139777870 - IAPLTR1a_Mm LTR ERVK -11 326 1 4 736 187 200 0 0 chr3 19822268 19822308 -139777475 - MIRc SINE MIR -148 120 81 4 736 1726 215 28 73 chr3 19822403 19822829 -139776954 + RMER1B Other Other 42 448 -618 4 736 542 169 39 46 chr3 19822869 19822999 -139776784 + RLTR11A2 LTR ERVK 1 129 -324 4 736 36846 64 6 10 chr3 19823000 19829106 -139770677 - L1Md_F2 LINE L1 0 6582 508 4 736 931 241 84 4 chr3 19829119 19829394 -139770389 + RLTR11A2 LTR ERVK 137 433 -94 4 736 960 53 0 0 chr3 19829392 19829523 -139770260 + B1_Mm SINE Alu 9 139 -8 4 736 909 99 0 26 chr3 19829523 19829678 -139770105 + (GAAA)n Simple_repeat Simple_repeat 2 152 0 4 736 1555 140 66 7 chr3 19829701 19830003 -139769780 + L1_Mur2 LINE L1 3044 3363 -2514 4 736 2625 208 40 26 chr3 19830717 19831343 -139768440 + MYSERV-int LTR ERVK 5913 6547 -3 4 736 1103 99 5 59 chr3 19831347 19831539 -139768244 + RLTR11B LTR ERVK 1 181 -272 4 736 389 97 0 46 chr3 19831539 19831604 -139768179 - ORR1A2 LTR MaLR 0 329 268 4 736 1132 113 16 21 chr3 19831592 19831781 -139768002 - B2_Mm2 SINE B2 -6 189 2 4 736 1597 141 10 66 chr3 19831788 19832091 -139767692 - ORR1A2 LTR MaLR -41 286 1 4 736 472 226 0 46 chr3 19832099 19832229 -139767554 + RLTR11B LTR ERVK 187 310 -143 4 736 2223 107 28 0 chr3 19832827 19833144 -139766639 + ORR1A2 LTR MaLR 1 326 -1 4 736 191 116 47 0 chr3 19833618 19833661 -139766122 + CT-rich Low_complexity Low_complexity 4 48 0 4 736 671 184 8 46 chr3 19833661 19833792 -139765991 - B1_Mus2 SINE Alu -21 126 1 4 736 1072 203 7 13 chr3 19834763 19835709 -139764074 + MMSAT4 Satellite Satellite 1 940 0 4 736 294 335 20 99 chr3 19836192 19836394 -139763389 + RMER15 LTR ERVL 258 443 -132 4 736 3165 136 14 30 chr3 19836419 19836884 -139762899 + L1_Mur1 LINE L1 3133 3600 -2286 4 736 2494 88 14 17 chr3 19836884 19837233 -139762550 + L1_Mus2 LINE L1 6219 6566 0 4 736 3165 136 14 30 chr3 19837233 19837395 -139762388 + L1_Mur1 LINE L1 3601 3750 -2136 4 736 31250 70 1 2 chr3 19837396 19842435 -139757348 + L1Md_F2 LINE L1 554 5586 -297 4 736 8075 46 0 2 chr3 19842435 19843418 -139756365 + L1Md_F2 LINE L1 5587 6567 -15 4 736 464 125 0 0 chr3 19843442 19843514 -139756269 + L1_Mur1 LINE L1 3732 3803 -2074 4 736 1076 82 14 0 chr3 19843518 19843664 -139756119 - MT2B LTR ERVL -451 150 3 4 736 2279 230 51 19 chr3 19843667 19844239 -139755544 + Lx5 LINE L1 6450 7039 -11 4 736 2504 184 55 13 chr3 19844537 19845011 -139754772 + RLTR16 LTR ERVK 12 505 0 4 736 315 109 0 0 chr3 19845022 19845068 -139754715 - ORR1B2 LTR MaLR -8 386 341 5 736 1508 201 46 52 chr3 19845146 19845472 -139754311 - ORR1B2 LTR MaLR -43 324 1 5 736 2924 174 99 7 chr3 19845472 19846057 -139753726 - ORR1B2-int LTR MaLR 0 1509 871 5 736 713 167 31 8 chr3 19846056 19846183 -139753600 + RLTR33 LTR ERVK 193 322 -356 5 736 292 322 39 19 chr3 19846718 19846873 -139752910 + RLTR33 LTR ERVK 494 651 -27 5 736 3790 192 49 5 chr3 19846892 19847680 -139752103 - ORR1B2-int LTR MaLR -611 898 75 5 736 2120 142 79 3 chr3 19847680 19848046 -139751737 + ORR1B1 LTR MaLR 1 394 0 5 736 6293 201 62 13 chr3 19848046 19849442 -139750341 + ORR1B1-int LTR MaLR 1 1465 -44 5 736 535 151 32 21 chr3 19849461 19849556 -139750227 - ORR1B2 LTR MaLR -61 266 171 5 736 996 106 40 0 chr3 19849526 19849677 -139750106 - ORR1B2 LTR MaLR -61 266 110 5 736 722 223 27 59 chr3 19849659 19849845 -139749938 - ORR1B2 LTR MaLR -76 253 74 5 736 1918 175 70 8 chr3 19849871 19850240 -139749543 + ORR1B1 LTR MaLR 3 394 0 5 736 302 263 31 21 chr3 19850240 19850337 -139749446 + Lx8 LINE L1 6210 6307 -1166 5 736 281 0 82 0 chr3 19850342 19850391 -139749392 + (TTTTTG)n Simple_repeat Simple_repeat 2 54 0 5 736 568 167 49 54 chr3 19850392 19850595 -139749188 - RMER17C LTR ERVK -137 273 72 5 736 1784 304 112 25 chr3 19850597 19851430 -139748353 + Lx8 LINE L1 6299 7203 -270 5 736 1616 220 19 63 chr3 19851433 19851811 -139747972 + ORR1D1 LTR MaLR 14 374 0 5 736 259 350 7 14 chr3 19851811 19851950 -139747833 + Lx8 LINE L1 7184 7321 -152 5 736 437 306 85 24 chr3 19851959 19852123 -139747660 + MLT1D LTR MaLR 323 496 -9 5 736 2615 109 65 5 chr3 19852362 19852759 -139747024 + Lx3C LINE L1 6554 6974 -2 5 736 497 323 102 64 chr3 19852927 19853241 -139746542 + MER74A LTR ERVL 165 490 -68 5 736 551 210 46 46 chr3 19853457 19853587 -139746196 + B1F2 SINE Alu 9 138 -11 5 736 405 254 164 0 chr3 19853614 19853736 -139746047 + B1F SINE Alu 1 142 -7 5 736 226 259 0 156 chr3 19855482 19855546 -139744237 + ID2 SINE ID 13 66 -17 5 736 468 0 0 0 chr3 19855553 19855605 -139744178 + (CA)n Simple_repeat Simple_repeat 2 53 0 5 736 180 138 0 0 chr3 19855666 19855695 -139744088 - MIRc SINE MIR -125 143 115 5 736 197 293 66 13 chr3 19855832 19855908 -139743875 + L2a LINE L2 3341 3420 -6 5 736 459 147 19 10 chr3 19856243 19856346 -139743437 + CT-rich Low_complexity Low_complexity 2 105 0 5 736 1408 80 11 0 chr3 19856452 19856640 -139743143 - B2_Mm1t SINE B2 -2 191 2 5 736 23 33 0 0 chr3 19856752 19856782 -139743001 + AT_rich Low_complexity Low_complexity 1 30 0 5 736 210 368 21 21 chr3 19856895 19856992 -139742791 - MIRm SINE MIR -19 257 161 5 736 357 260 108 92 chr3 19857840 19858035 -139741748 + MIRb SINE MIR 70 267 -1 5 736 251 257 57 0 chr3 19859353 19859423 -139740360 - MER57E1 LTR ERV1 -210 162 89 5 736 310 243 27 13 chr3 19859551 19859626 -139740157 - MER57E1 LTR ERV1 -294 78 3 5 736 24 0 0 0 chr3 19859635 19859659 -139740124 + AT_rich Low_complexity Low_complexity 1 24 0 5 736 761 266 112 48 chr3 19859695 19860070 -139739713 + RMER10A LTR ERVL 19 417 -25 5 736 227 305 0 33 chr3 19860064 19860125 -139739658 + ID_B1 SINE B4 156 214 -10 5 736 684 349 76 30 chr3 19860627 19861023 -139738760 + MLT1E2 LTR MaLR 196 609 -18 5 736 402 21 0 0 chr3 19861246 19861293 -139738490 + (TTG)n Simple_repeat Simple_repeat 2 48 0 5 736 576 260 91 58 chr3 19863682 19863956 -139735827 + B4A SINE B4 3 285 -7 5 736 389 230 139 10 chr3 19864985 19865086 -139734697 + RSINE1 SINE B4 50 163 -2 5 736 25 31 0 0 chr3 19865098 19865130 -139734653 + AT_rich Low_complexity Low_complexity 1 32 0 5 736 251 324 72 86 chr3 19865146 19865298 -139734485 - RMER15 LTR ERVL 0 575 426 5 736 297 296 0 0 chr3 19865387 19865475 -139734308 - Lx8 LINE L1 -349 7124 7037 5 736 255 256 48 60 chr3 19865627 19865793 -139733990 + L1MC5 LINE L1 7697 7860 -101 5 736 315 145 0 0 chr3 19866494 19866563 -139733220 + (T)n Simple_repeat Simple_repeat 1 69 0 5 736 4966 51 9 8 chr3 19866715 19867349 -139732434 - L1Md_F2 LINE L1 0 6582 5948 5 736 1713 158 181 3 chr3 19868335 19868677 -139731106 - MTC LTR MaLR 0 421 19 5 736 304 361 15 8 chr3 19869552 19869686 -139730097 + MER117 DNA MER1_type 58 192 -5 5 736 469 264 20 7 chr3 19871101 19871355 -139728428 - L1M4 LINE L1 -753 5421 5164 5 736 837 225 0 13 chr3 19871480 19871633 -139728150 + RSINE1 SINE B4 11 161 -4 5 736 322 362 55 6 chr3 19871849 19872013 -139727770 + L2 LINE L2 2330 2501 -918 5 736 541 302 44 6 chr3 19872410 19872570 -139727213 + RCHARR1 DNA MER1_type 5 170 -804 5 736 238 303 124 24 chr3 19873163 19873332 -139726451 + MIR SINE MIR 75 260 -2 5 736 23 33 0 0 chr3 19874295 19874325 -139725458 + AT_rich Low_complexity Low_complexity 1 30 0 5 736 237 302 70 0 chr3 19874344 19874430 -139725353 + MIRc SINE MIR 63 154 -114 5 736 24 0 0 0 chr3 19875148 19875172 -139724611 + AT_rich Low_complexity Low_complexity 1 24 0 5 736 278 340 0 20 chr3 19875198 19875297 -139724486 + PB1D10 SINE Alu 2 98 -19 5 736 608 251 22 10 chr3 19875490 19875637 -139724146 + ID_B1 SINE B4 80 223 -69 5 736 255 298 109 41 chr3 19875505 19875652 -139724131 - YREP_Mm Unknown Unknown -1504 308 152 5 736 753 196 6 51 chr3 19875728 19875884 -139723899 + B1_Mur3 SINE Alu 1 149 0 5 736 289 360 50 7 chr3 19875929 19876069 -139723714 - RMER15 LTR ERVL -6 569 424 5 736 318 280 17 10 chr3 19876442 19876539 -139723244 - MTEb LTR MaLR -12 367 253 5 736 212 227 29 57 chr3 19876650 19876720 -139723063 + GA-rich Low_complexity Low_complexity 6 73 0 5 736 226 296 56 0 chr3 19876772 19876843 -139722940 - MTEb LTR MaLR -284 75 1 5 736 422 190 0 12 chr3 19877517 19877597 -139722186 - B1_Mur3 SINE Alu -5 144 66 5 736 552 172 0 0 chr3 19877619 19877735 -139722048 + GA-rich Low_complexity Low_complexity 2 117 0 5 736 399 338 34 47 chr3 19877798 19877947 -139721836 - RSINE1 SINE B4 -17 148 2 5 736 625 291 34 6 chr3 19877952 19878128 -139721655 + MER5A DNA MER1_type 3 183 -6 5 736 2059 183 65 12 chr3 19879090 19879489 -139720294 - MTC LTR MaLR -1 420 1 5 736 1274 114 5 20 chr3 19879546 19879742 -139720041 - B2_Mm2 SINE B2 -2 193 1 5 736 486 0 0 0 chr3 19879834 19879888 -139719895 + (TG)n Simple_repeat Simple_repeat 1 54 0 5 736 468 0 0 0 chr3 19879888 19879939 -139719844 + (GA)n Simple_repeat Simple_repeat 1 52 0 5 736 183 80 0 0 chr3 19880555 19880580 -139719203 + (T)n Simple_repeat Simple_repeat 1 25 0 5 736 225 94 0 0 chr3 19882219 19882251 -139717532 + (GGAAA)n Simple_repeat Simple_repeat 3 34 0 5 736 348 133 0 0 chr3 19882514 19882574 -139717209 + (TA)n Simple_repeat Simple_repeat 2 61 0 5 736 1092 105 111 0 chr3 19882733 19882905 -139716878 - URR1B DNA MER1_type 0 225 35 5 736 387 251 47 105 chr3 19882747 19882938 -139716845 + CYRA11_Mm Unknown Y-chromosome 217 396 -221 5 736 331 214 14 0 chr3 19886200 19886270 -139713513 - Lx4B LINE L1 -268 6790 6720 5 736 697 171 120 28 chr3 19886268 19886485 -139713298 + Lx4B LINE L1 6765 7001 -57 5 736 350 336 8 0 chr3 19889608 19889730 -139710053 + (TG)n Simple_repeat Simple_repeat 1 123 0 5 736 1074 179 39 0 chr3 19890071 19890278 -139709505 + URR1B DNA MER1_type 7 221 -4 5 736 721 181 25 100 chr3 19890302 19890462 -139709321 + B3 SINE B2 2 149 -67 5 736 261 0 0 0 chr3 19890471 19890500 -139709283 + (CA)n Simple_repeat Simple_repeat 2 30 0 5 736 623 58 23 0 chr3 19890540 19890627 -139709156 + (GGAA)n Simple_repeat Simple_repeat 3 91 0 5 736 414 57 0 0 chr3 19890627 19890680 -139709103 + (GGA)n Simple_repeat Simple_repeat 1 53 0 5 736 245 89 0 22 chr3 19891068 19891114 -139708669 + (CAAAA)n Simple_repeat Simple_repeat 2 46 0 5 736 852 219 6 0 chr3 19891882 19892042 -139707741 - B3 SINE B2 -5 211 51 5 736 638 104 179 0 chr3 19892735 19892869 -139706914 + RMER17B LTR ERVK 306 463 -495 5 736 22 0 0 0 chr3 19892869 19892891 -139706892 + AT_rich Low_complexity Low_complexity 1 22 0 5 736 316 251 328 0 chr3 19893324 19893482 -139706301 + B3 SINE B2 2 211 -5 5 736 6607 53 6 5 chr3 19893765 19894549 -139705234 - L1_Mus2 LINE L1 0 6566 5782 5 736 6583 59 48 11 chr3 19894725 19895579 -139704204 - Lx3_Mus LINE L1 -5 7004 6119 5 736 2005 77 13 1 chr3 19895846 19896140 -139703643 + L1_Mm LINE L1 5564 5869 -11 5 736 739 300 19 66 chr3 19897710 19897967 -139701816 + B4A SINE B4 2 246 -46 5 736 235 159 60 60 chr3 19897968 19898035 -139701748 + GA-rich Low_complexity Low_complexity 1 67 0 5 736 456 295 0 0 chr3 19898036 19898128 -139701655 + A-rich Low_complexity Low_complexity 1 92 0 5 736 1259 61 0 0 chr3 19898128 19898275 -139701508 + B1_Mm SINE Alu 1 147 0 5 736 456 295 0 0 chr3 19898275 19898355 -139701428 + A-rich Low_complexity Low_complexity 93 172 0 5 736 502 326 47 0 chr3 19898643 19898815 -139700968 + B3A SINE B2 1 180 -18 5 736 297 0 0 0 chr3 19898856 19898889 -139700894 + (CA)n Simple_repeat Simple_repeat 1 33 0 5 736 21 0 0 0 chr3 19899173 19899194 -139700589 + AT_rich Low_complexity Low_complexity 1 21 0 5 736 541 276 60 27 chr3 19899391 19899540 -139700243 + RSINE1 SINE B4 12 165 0 5 736 252 280 148 44 chr3 19899540 19899574 -139700209 + B3 SINE B2 11 212 -4 5 736 608 287 84 38 chr3 19899579 19899840 -139699943 + B4A SINE B4 2 274 -18 5 736 22 56 0 0 chr3 19900085 19900121 -139699662 + AT_rich Low_complexity Low_complexity 1 36 0 5 736 733 216 101 17 chr3 19900141 19900320 -139699463 + B3 SINE B2 23 216 0 5 736 353 301 155 14 chr3 19900418 19900566 -139699217 + MER20 DNA MER1_type 1 169 -50 5 736 710 239 22 0 chr3 19900640 19900770 -139699013 + RSINE1 SINE B4 4 136 -29 5 736 782 173 7 15 chr3 19900770 19900905 -139698878 + MT2A LTR ERVL 1 134 -399 5 736 255 309 0 42 chr3 19900899 19900970 -139698813 + MT2A LTR ERVL 94 161 -372 5 736 226 298 16 109 chr3 19901024 19901152 -139698631 + MT2A LTR ERVL 144 259 -274 5 736 752 219 20 15 chr3 19901444 19901604 -139698179 + MT2A LTR ERVL 338 495 -38 5 736 369 62 0 0 chr3 19901604 19901652 -139698131 + (CA)n Simple_repeat Simple_repeat 1 48 0 5 736 752 219 20 15 chr3 19901652 19901686 -139698097 + MT2A LTR ERVL 496 532 -1 5 736 1197 103 98 0 chr3 19902901 19903075 -139696708 + B2_Mm1t SINE B2 1 191 -2 5 736 207 0 0 0 chr3 19903651 19903674 -139696109 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 5 736 717 73 0 0 chr3 19903789 19903885 -139695898 + (GA)n Simple_repeat Simple_repeat 1 96 0 6 736 2434 137 27 55 chr3 19904035 19904474 -139695309 + RMER1B Other Other 640 1066 0 6 736 354 257 20 10 chr3 19904598 19904700 -139695083 + MTD LTR MaLR 270 372 -47 6 736 2445 71 6 10 chr3 19905017 19905373 -139694410 - L1Md_A LINE L1 0 6582 6273 6 736 253 213 49 0 chr3 19905891 19905952 -139693831 + B1F SINE Alu 85 148 -1 6 736 1894 229 102 21 chr3 19906570 19907293 -139692490 + L1_Rod LINE L1 1448 2229 -3618 6 736 481 250 0 0 chr3 19907599 19907679 -139692104 - PB1D10 SINE Alu -37 80 1 6 736 234 318 10 83 chr3 19907679 19907695 -139692088 - MT2B2 LTR ERVL -346 238 150 6 736 888 37 0 0 chr3 19908138 19908246 -139691537 + (GAAAA)n Simple_repeat Simple_repeat 4 111 0 6 736 597 28 0 0 chr3 19909182 19909253 -139690530 + (AATAG)n Simple_repeat Simple_repeat 1 71 0 6 736 654 158 10 0 chr3 19909658 19909759 -139690024 - PB1D9 SINE Alu -18 102 1 6 736 586 277 81 0 chr3 19909773 19909921 -139689862 - RSINE1 SINE B4 -2 163 4 6 736 1771 21 5 0 chr3 19909950 19910141 -139689642 - B2_Mm1t SINE B2 0 193 2 6 736 1575 73 5 0 chr3 19910227 19910419 -139689364 + B2_Mm1t SINE B2 1 193 0 6 736 607 293 128 16 chr3 19910441 19910691 -139689092 + B4 SINE B4 1 278 -14 6 736 189 0 0 0 chr3 19911821 19911842 -139687941 + (CA)n Simple_repeat Simple_repeat 2 22 0 6 736 2246 75 49 3 chr3 19913343 19913650 -139686133 + Lx LINE L1 6327 6647 -7 6 736 22 0 0 0 chr3 19914382 19914404 -139685379 + AT_rich Low_complexity Low_complexity 1 22 0 6 736 2736 204 92 26 chr3 19914505 19914937 -139684846 + RMER1B Other Other 357 832 -234 6 736 907 95 11 174 chr3 19914937 19915115 -139684668 - B1_Mur3 SINE Alu 0 149 1 6 736 2736 204 92 26 chr3 19915115 19915346 -139684437 + RMER1B Other Other 833 1064 -2 6 736 632 211 220 12 chr3 19916154 19916346 -139683437 - MTD LTR MaLR -14 405 165 6 736 630 256 81 66 chr3 19916387 19916584 -139683199 - B3 SINE B2 -9 207 8 6 736 978 218 21 0 chr3 19916540 19916733 -139683050 - MTD LTR MaLR -202 217 21 6 736 397 0 42 42 chr3 19916734 19916805 -139682978 + (CAAAA)n Simple_repeat Simple_repeat 1 71 0 6 736 270 258 110 98 chr3 19917328 19917564 -139682219 + L1MC4 LINE L1 7434 7672 -370 6 736 733 252 217 31 chr3 19918087 19918441 -139681342 - MTD LTR MaLR 0 419 1 6 736 789 252 80 10 chr3 19920025 19920225 -139679558 + ID_B1 SINE B4 2 215 -9 6 736 880 141 7 40 chr3 19920670 19920818 -139678965 + B1_Mus1 SINE Alu 6 148 0 6 736 1206 68 0 13 chr3 19921398 19921548 -139678235 + B1_Mus1 SINE Alu 1 148 0 6 736 293 182 30 0 chr3 19921585 19921647 -139678136 + B1F SINE Alu 53 119 -30 6 736 1472 84 10 16 chr3 19921679 19921873 -139677910 + B2_Mm1t SINE B2 1 193 0 6 736 1041 157 178 0 chr3 19921931 19922122 -139677661 - URR1B DNA MER1_type 0 225 1 6 736 2049 176 103 18 chr3 19922249 19922637 -139677146 - MTC LTR MaLR 0 421 1 6 737 235 320 13 13 chr3 19923566 19923642 -139676141 + RMER15 LTR ERVL 178 253 -322 6 737 494 243 48 0 chr3 19923646 19923749 -139676034 + B1_Mur2 SINE Alu 1 108 -41 6 737 1336 181 94 8 chr3 19924087 19924354 -139675429 + ORR1B1 LTR MaLR 1 290 -104 6 737 251 118 0 0 chr3 19924355 19924389 -139675394 + ORR1B1 LTR MaLR 257 290 -104 6 737 266 276 0 0 chr3 19924401 19924459 -139675324 + ORR1B1 LTR MaLR 233 290 -104 6 737 266 276 0 0 chr3 19924471 19924529 -139675254 + ORR1A4 LTR MaLR 233 290 -104 6 737 900 130 6 38 chr3 19924511 19924671 -139675112 + ORR1A4 LTR MaLR 175 329 0 6 737 828 175 166 79 chr3 19924779 19924850 -139674933 - ORR1D1 LTR MaLR 0 374 306 6 737 877 171 14 14 chr3 19924850 19924998 -139674785 + B1_Mus1 SINE Alu 1 148 0 6 737 828 175 166 79 chr3 19924998 19925155 -139674628 - ORR1D1 LTR MaLR -69 305 126 6 737 404 284 90 51 chr3 19925170 19925348 -139674435 + MTEa LTR MaLR 137 321 -58 6 737 505 276 108 4 chr3 19926243 19926494 -139673289 - MER33 DNA MER1_type -6 318 42 6 737 543 231 71 82 chr3 19926965 19927149 -139672634 + B3A SINE B2 16 197 -1 6 737 236 366 47 31 chr3 19927167 19927359 -139672424 - L2a LINE L2 -268 3158 2964 6 737 1940 123 101 6 chr3 19927655 19927983 -139671800 - RLTR15 LTR ERVK 0 359 1 6 737 181 319 42 0 chr3 19928240 19928312 -139671471 + MER5B DNA MER1_type 22 96 -82 6 737 739 273 36 71 chr3 19928333 19928558 -139671225 - ID_B1 SINE B4 0 224 8 6 737 239 396 11 0 chr3 19928616 19928707 -139671076 - L3 LINE CR1 -1057 3432 3341 6 737 1596 221 62 11 chr3 19929389 19929746 -139670037 - MTD LTR MaLR 0 419 45 6 737 207 0 0 0 chr3 19929746 19929769 -139670014 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 6 737 457 244 73 15 chr3 19929919 19930056 -139669727 + B1F1 SINE Alu 3 147 -2 6 737 6844 53 28 1 chr3 19931845 19932691 -139667092 + L1_Mus2 LINE L1 5698 6566 0 6 737 506 43 14 0 chr3 19932731 19932800 -139666983 + (TTCC)n Simple_repeat Simple_repeat 3 72 0 6 737 348 298 69 119 chr3 19932808 19933143 -139666640 + MTEa LTR MaLR 1 306 -73 6 737 797 90 23 29 chr3 19933371 19933542 -139666241 + (GGGAGA)n Simple_repeat Simple_repeat 5 174 0 6 737 551 299 102 0 chr3 19934715 19934892 -139664891 - ID_B1 SINE B4 0 224 30 6 737 1384 0 0 0 chr3 19935541 19935694 -139664089 - L1Md_T LINE L1 0 6582 6430 6 737 24 0 0 0 chr3 19935816 19935840 -139663943 + AT_rich Low_complexity Low_complexity 1 24 0 6 737 683 318 162 12 chr3 19936604 19936642 -139663141 - MTEa LTR MaLR -2 377 330 6 737 2392 118 122 71 chr3 19936642 19937051 -139662732 + RLTR23 LTR ERV1 1 430 0 6 737 683 318 162 12 chr3 19937051 19937340 -139662443 - MTEa LTR MaLR -50 329 2 6 737 833 264 69 77 chr3 19937461 19937810 -139661973 - MLT1B LTR MaLR -3 387 42 6 737 1781 145 11 95 chr3 19937810 19937854 -139661929 - ORR1A4 LTR MaLR 0 329 288 6 737 8510 68 8 2 chr3 19937854 19938871 -139660912 + RLTR13D5 LTR ERVK 1 1023 0 6 737 1781 145 11 95 chr3 19938871 19939185 -139660598 - ORR1A4 LTR MaLR -42 287 1 6 737 2197 164 78 0 chr3 19939364 19939724 -139660059 + ORR1B1 LTR MaLR 3 390 -4 6 737 3250 186 200 42 chr3 19939726 19940634 -139659149 + RLTR21 LTR ERVK 7 1058 -514 6 737 2743 115 152 0 chr3 19940946 19941408 -139658375 - RLTR47_MM LTR ERV1 0 532 1 6 737 1870 125 33 58 chr3 19941437 19941767 -139658016 - RLTRETN_Mm LTR ERVK 0 322 1 6 737 3038 65 3 0 chr3 19941798 19942154 -139657629 - IAPEY2_LTR LTR ERVK 0 357 1 6 737 9490 88 44 15 chr3 19942157 19943584 -139656199 - MusHAL1 LINE L1 -1152 1560 93 6 737 716 12 0 0 chr3 19943586 19943668 -139656115 - RLTRETN_Mm LTR ERVK -250 82 1 6 737 8062 102 14 22 chr3 19943675 19944987 -139654796 - MMETn-int LTR ERVK -31 4813 3512 6 737 22345 55 4 31 chr3 19945043 19948244 -139651539 - MMETn-int LTR ERVK -1703 3141 26 6 737 1789 116 9 73 chr3 19948252 19948265 -139651518 - RLTRETN_Mm LTR ERVK 0 322 314 6 737 2793 55 145 139 chr3 19948265 19948774 -139651009 + RLTR1B LTR ERV1 1 512 0 6 737 1789 116 9 73 chr3 19948774 19949104 -139650679 - RLTRETN_Mm LTR ERVK -9 313 1 6 737 265 183 99 0 chr3 19949104 19949164 -139650619 + PB1D10 SINE Alu 51 117 0 6 737 180 77 0 0 chr3 19949447 19949473 -139650310 + (TTGG)n Simple_repeat Simple_repeat 2 27 0 6 737 602 214 56 14 chr3 19949473 19949615 -139650168 - B1_Mur3 SINE Alu -1 148 1 6 737 328 308 126 95 chr3 19949736 19950030 -139649753 + RMER10A LTR ERVL 121 423 -19 6 737 1796 130 102 42 chr3 19950403 19950746 -139649037 + RMER10A LTR ERVL 60 426 -16 6 737 270 106 0 0 chr3 19950746 19950793 -139648990 + (TCTG)n Simple_repeat Simple_repeat 2 48 0 6 737 1796 130 102 42 chr3 19950793 19950810 -139648973 + RMER10A LTR ERVL 427 442 0 6 737 22 0 0 0 chr3 19950818 19950840 -139648943 + AT_rich Low_complexity Low_complexity 1 22 0 6 737 252 0 0 0 chr3 19950958 19950986 -139648797 + (CA)n Simple_repeat Simple_repeat 1 28 0 6 737 396 291 47 8 chr3 19950999 19951127 -139648656 - ORR1D2 LTR MaLR -43 327 195 6 737 322 292 0 73 chr3 19951265 19951292 -139648491 - B1F SINE Alu -60 89 69 6 737 6253 60 4 30 chr3 19951292 19952117 -139647666 - RLTR13B4 LTR ERVK 0 803 1 6 737 322 292 0 73 chr3 19952117 19952185 -139647598 - B1F SINE Alu -81 68 1 6 737 874 159 15 0 chr3 19952215 19952347 -139647436 - B1_Mur4 SINE Alu -11 139 6 6 737 234 283 145 94 chr3 19952407 19952641 -139647142 + L2 LINE L2 2172 2417 -1002 6 737 301 352 70 38 chr3 19953086 19953272 -139646511 - L2b LINE L2 -211 3164 2973 6 737 724 112 84 0 chr3 19953510 19953617 -139646166 + B2_Mm2 SINE B2 1 116 -79 6 737 589 196 0 10 chr3 19953799 19953902 -139645881 - B3 SINE B2 -112 104 3 6 737 6557 104 34 15 chr3 19954549 19955546 -139644237 + RLTR13D5 LTR ERVK 1 1016 -7 6 737 232 266 12 25 chr3 19955810 19955891 -139643892 + BC1_Mm scRNA scRNA 21 100 -52 6 737 274 246 0 34 chr3 19956023 19956082 -139643701 + ID4_ SINE ID 2 58 -25 6 737 1220 271 85 28 chr3 19956108 19956579 -139643204 + RMER5 LTR ERV1 33 530 -4 6 737 775 47 157 37 chr3 19957033 19957167 -139642616 + L1Md_F2 LINE L1 6433 6582 0 6 737 213 139 0 0 chr3 19958208 19958251 -139641532 + (G)n Simple_repeat Simple_repeat 1 43 0 6 737 700 123 139 0 chr3 19958644 19958766 -139641017 + B1_Mus1 SINE Alu 4 142 -6 6 737 366 41 0 0 chr3 19958796 19958845 -139640938 + B1_Mm SINE Alu 99 147 0 6 737 189 0 0 0 chr3 19959479 19959500 -139640283 + (TA)n Simple_repeat Simple_repeat 1 21 0 6 737 660 26 0 0 chr3 19959645 19959723 -139640060 + (TTTTC)n Simple_repeat Simple_repeat 2 79 0 6 737 545 276 66 11 chr3 19959801 19959984 -139639799 + B3A SINE B2 1 193 -5 6 737 198 0 0 0 chr3 19960038 19960060 -139639723 + (TA)n Simple_repeat Simple_repeat 2 23 0 6 737 279 0 0 0 chr3 19960060 19960090 -139639693 + (TG)n Simple_repeat Simple_repeat 2 32 0 6 737 1614 32 0 0 chr3 19960305 19960490 -139639293 - B2_Mm1t SINE B2 -8 185 1 6 737 411 247 0 13 chr3 19960568 19960646 -139639137 - B1F1 SINE Alu -40 109 33 7 737 183 42 0 0 chr3 19961369 19961393 -139638390 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 7 737 910 79 87 0 chr3 19961393 19961520 -139638263 - B1_Mus1 SINE Alu -9 139 2 7 737 1230 97 0 11 chr3 19961737 19961914 -139637869 + B2_Mm2 SINE B2 1 175 -20 7 737 1095 70 0 0 chr3 19962018 19962160 -139637623 - B1_Mus2 SINE Alu 0 147 6 7 737 1185 257 92 46 chr3 19962256 19962693 -139637090 - Lx8 LINE L1 -820 6653 6197 7 737 307 128 0 41 chr3 19962701 19962750 -139637033 + HAL1-3A_ME LINE L1 1966 2012 -846 7 737 341 188 0 12 chr3 19962756 19962837 -139636946 + (CA)n Simple_repeat Simple_repeat 1 80 0 7 737 441 283 142 20 chr3 19962876 19963290 -139636493 - Lx8 LINE L1 -1597 6099 5642 7 737 652 272 32 55 chr3 19963472 19963690 -139636093 + ID_B1 SINE B4 2 214 -10 7 737 292 188 92 81 chr3 19964229 19964316 -139635467 - PB1D10 SINE Alu -21 96 9 7 737 312 226 55 37 chr3 19964314 19964419 -139635364 - B1_Mus1 SINE Alu -15 105 8 7 737 484 269 71 30 chr3 19965391 19965566 -139634217 - ID_B1 SINE B4 -18 274 92 7 737 366 236 99 94 chr3 19965801 19965993 -139633790 - MER2 DNA MER2_type -69 276 84 7 737 1413 46 12 0 chr3 19966568 19966741 -139633042 + B2_Mm2 SINE B2 2 176 -19 7 737 26 88 0 0 chr3 19967432 19967500 -139632283 + AT_rich Low_complexity Low_complexity 1 68 0 7 737 24 53 0 0 chr3 19967526 19967564 -139632219 + AT_rich Low_complexity Low_complexity 1 38 0 7 737 1104 79 26 0 chr3 19967600 19967752 -139632031 - B2_Mm2 SINE B2 -3 192 37 7 737 399 21 0 0 chr3 19967752 19967800 -139631983 + (CA)n Simple_repeat Simple_repeat 1 48 0 7 737 1030 84 0 0 chr3 19967829 19967971 -139631812 - B1_Mus1 SINE Alu 0 148 7 7 737 404 250 49 63 chr3 19967980 19968185 -139631598 - L1MA4 LINE L1 -365 5935 5734 7 737 1058 71 21 0 chr3 19968187 19968328 -139631455 - B2_Mm2 SINE B2 -15 180 37 7 737 206 79 0 50 chr3 19968329 19968369 -139631414 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 7 737 1172 75 0 0 chr3 19968369 19968515 -139631268 - B1_Mus2 SINE Alu 0 147 2 7 737 180 0 0 0 chr3 19969275 19969295 -139630488 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 7 737 1735 16 0 0 chr3 19970464 19970657 -139629126 - B2_Mm1a SINE B2 0 193 1 7 737 325 283 81 24 chr3 19971138 19971261 -139628522 - MTEb LTR MaLR -65 314 185 7 737 235 339 60 38 chr3 19971365 19971549 -139628234 - Charlie1 DNA MER1_type -791 1990 1803 7 737 289 79 0 0 chr3 19971550 19971588 -139628195 + (TG)n Simple_repeat Simple_repeat 1 38 0 7 737 486 188 0 0 chr3 19971588 19971684 -139628099 + (TA)n Simple_repeat Simple_repeat 1 96 0 7 737 491 127 64 0 chr3 19971689 19971799 -139627984 + Lx9 LINE L1 7477 7593 -51 7 737 348 94 0 0 chr3 19971876 19971929 -139627854 + (CA)n Simple_repeat Simple_repeat 2 54 0 7 737 630 176 0 0 chr3 19972486 19972605 -139627178 + CT-rich Low_complexity Low_complexity 2 120 0 7 737 369 107 176 33 chr3 19972608 19972719 -139627064 - B2_Mm2 SINE B2 -1 194 47 7 737 1181 107 12 0 chr3 19972804 19972973 -139626810 - B2_Mm1t SINE B2 -14 179 9 7 737 714 222 22 7 chr3 19973110 19973246 -139626537 + B1_Mur2 SINE Alu 10 147 -2 7 737 294 73 0 0 chr3 19973285 19973326 -139626457 + (CA)n Simple_repeat Simple_repeat 2 42 0 7 737 371 118 9 30 chr3 19973342 19973453 -139626330 - ORR1D1 LTR MaLR 0 384 199 7 737 477 0 0 0 chr3 19973461 19973514 -139626269 + (GGGA)n Simple_repeat Simple_repeat 2 54 0 7 737 22 0 0 0 chr3 19973842 19973864 -139625919 + AT_rich Low_complexity Low_complexity 1 22 0 7 737 4317 78 37 0 chr3 19973922 19974617 -139625166 + L1_Mus4 LINE L1 5499 6219 -417 7 737 1585 52 0 5 chr3 19975538 19975733 -139624050 + B2_Mm2 SINE B2 2 195 0 7 737 180 0 0 0 chr3 19976134 19976154 -139623629 + (TTTA)n Simple_repeat Simple_repeat 3 22 0 7 737 1349 38 0 0 chr3 19976154 19976314 -139623469 - B2_Mm1a SINE B2 -33 160 1 7 737 1021 88 175 0 chr3 19976795 19976955 -139622828 + B2_Mm2 SINE B2 2 189 -6 7 737 1547 57 0 0 chr3 19977115 19977307 -139622476 - B2_Mm1a SINE B2 0 193 2 7 737 1079 170 43 24 chr3 19977309 19977520 -139622263 - B3 SINE B2 0 216 2 7 737 216 86 0 0 chr3 19977527 19977562 -139622221 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 7 737 927 155 0 33 chr3 19977575 19977728 -139622055 - B1_Mus1 SINE Alu 0 148 1 7 737 478 307 65 7 chr3 19977944 19978098 -139621685 - MIR SINE MIR -93 169 7 7 737 306 314 147 17 chr3 19978592 19979240 -139620543 - L1M2 LINE L1 -3952 2597 1921 7 737 2352 144 252 21 chr3 19979354 19980012 -139619771 - Lx3C LINE L1 0 6976 6167 7 737 225 0 0 0 chr3 19980244 19980269 -139619514 + (TTTG)n Simple_repeat Simple_repeat 4 28 0 7 737 300 241 174 41 chr3 19980723 19980844 -139618939 - HAL1-3A_ME LINE L1 -748 2110 1974 7 737 362 85 17 0 chr3 19980846 19980905 -139618878 + (GA)n Simple_repeat Simple_repeat 1 60 0 7 737 183 156 0 0 chr3 19981000 19981032 -139618751 + (TA)n Simple_repeat Simple_repeat 2 33 0 7 737 21 0 0 0 chr3 19983645 19983666 -139616117 + AT_rich Low_complexity Low_complexity 1 21 0 7 737 3385 31 3 0 chr3 19983903 19984294 -139615489 + MTA_Mm LTR MaLR 1 392 -4 7 737 609 301 62 36 chr3 19984795 19984988 -139614795 + B3A SINE B2 1 198 0 7 737 794 291 50 75 chr3 19984997 19985107 -139614676 + MTEb LTR MaLR 95 216 -163 7 737 483 84 0 0 chr3 19985107 19985178 -139614605 - L1Md_F2 LINE L1 -12 6570 6500 7 737 794 291 50 75 chr3 19985178 19985341 -139614442 + MTEb LTR MaLR 217 361 -18 7 737 1723 249 61 21 chr3 19985341 19985816 -139613967 + MTEb-int LTR MaLR 1 494 -1086 7 737 664 202 1 13 chr3 19985840 19985960 -139613823 - B1_Mur3 SINE Alu -100 211 10 7 737 270 353 65 36 chr3 19986558 19986696 -139613087 - MIR SINE MIR -106 156 15 7 737 243 0 0 0 chr3 19986713 19986740 -139613043 + (C)n Simple_repeat Simple_repeat 1 27 0 7 737 212 175 0 0 chr3 19987303 19987343 -139612440 + T-rich Low_complexity Low_complexity 1 40 0 7 737 238 132 59 24 chr3 19987444 19987529 -139612254 + (TAAA)n Simple_repeat Simple_repeat 4 91 0 7 737 1159 174 32 5 chr3 19987651 19987870 -139611913 - URR1B DNA MER1_type 0 225 1 7 737 216 0 0 0 chr3 19988023 19988047 -139611736 + (TG)n Simple_repeat Simple_repeat 2 25 0 7 737 697 265 13 7 chr3 19988056 19988208 -139611575 - B3A SINE B2 -42 156 4 7 737 2978 116 99 30 chr3 19989233 19989788 -139609995 - RLTR1D LTR ERV1 -7 617 1 7 737 1829 184 63 22 chr3 19989849 19990309 -139609474 + MMETn-int LTR ERVK 4366 4844 0 7 737 1729 135 35 16 chr3 19990309 19990625 -139609158 + RLTRETN_Mm LTR ERVK 1 322 0 7 737 884 148 7 0 chr3 19990634 19990776 -139609007 + URR1B DNA MER1_type 83 225 0 7 737 241 281 31 0 chr3 19991154 19991218 -139608565 + B4 SINE B4 80 145 -147 7 737 290 290 81 15 chr3 19991164 19991298 -139608485 + B1F2 SINE Alu 6 149 0 7 737 21 0 0 0 chr3 19991643 19991664 -139608119 + AT_rich Low_complexity Low_complexity 1 21 0 7 737 290 26 0 25 chr3 19991668 19991708 -139608075 + (TCTG)n Simple_repeat Simple_repeat 4 42 0 7 737 549 276 9 0 chr3 19991735 19991851 -139607932 - B3A SINE B2 -80 118 2 7 737 585 344 105 16 chr3 19992916 19993173 -139606610 - B4A SINE B4 -5 287 8 7 737 463 272 93 26 chr3 19993214 19993514 -139606269 - L1MA6 LINE L1 -25 6275 5952 7 737 351 0 0 0 chr3 19993535 19993574 -139606209 + (TG)n Simple_repeat Simple_repeat 1 39 0 7 737 367 316 130 36 chr3 19993577 19993715 -139606068 - RSINE1 SINE B4 -11 154 4 7 737 7570 47 0 5 chr3 19993752 19995408 -139604375 - L1Md_F2 LINE L1 0 6582 4938 7 737 314 224 0 0 chr3 19995415 19995482 -139604301 - L1M2 LINE L1 -1527 4616 4550 7 737 2160 127 9 6 chr3 19995482 19995807 -139603976 - ORR1A3 LTR MaLR 0 326 1 7 737 204 185 0 0 chr3 19996207 19996261 -139603522 + T-rich Low_complexity Low_complexity 1 54 0 7 737 232 191 44 0 chr3 19996401 19996469 -139603314 - Lx7 LINE L1 -16 7680 7610 7 737 393 211 27 9 chr3 19996469 19996579 -139603204 - L1M2 LINE L1 -1599 4544 4433 7 737 291 217 43 0 chr3 19996651 19996720 -139603063 + L1M2 LINE L1 4275 4346 -1797 7 737 1475 192 48 6 chr3 19996721 19997051 -139602732 + RLTR18-int LTR ERVK 5018 5361 0 7 737 219 120 39 39 chr3 19997097 19997149 -139602634 + T-rich Low_complexity Low_complexity 6 57 0 7 737 1191 62 0 0 chr3 19997149 19997295 -139602488 - B1_Mus2 SINE Alu 0 147 2 7 737 1668 246 143 26 chr3 19997296 19997800 -139601983 + RLTR18 LTR ERVK 43 605 -11 7 737 335 215 15 15 chr3 19997953 19998019 -139601764 + ID4 SINE ID 13 78 -5 7 737 202 288 0 29 chr3 19999248 19999316 -139600467 + C-rich Low_complexity Low_complexity 1 66 0 7 737 1148 106 6 0 chr3 20000100 20000279 -139599504 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 1 737 213 94 0 0 chr3 20000786 20000818 -139598965 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 2 737 1224 260 50 65 chr3 20001176 20001438 -139598345 + MTEa-int LTR MaLR 441 689 -891 3 737 1166 75 0 14 chr3 20001438 20001586 -139598197 + B1_Mm SINE Alu 1 146 -1 4 737 240 59 0 0 chr3 20001588 20001622 -139598161 + (CAA)n Simple_repeat Simple_repeat 2 35 0 5 737 1224 260 50 65 chr3 20001622 20001772 -139598011 + MTEa-int LTR MaLR 690 850 -730 3 737 245 111 37 0 chr3 20001813 20001867 -139597916 + (TTTTTG)n Simple_repeat Simple_repeat 3 58 0 6 737 1240 75 0 0 chr3 20001867 20002014 -139597769 - B1_Mus1 SINE Alu 0 148 2 7 737 324 18 0 18 chr3 20002021 20002077 -139597706 - B2_Mm2 SINE B2 -2 193 139 8 737 782 122 9 0 chr3 20002122 20002237 -139597546 - B2_Mm1t SINE B2 -14 179 64 9 737 2363 252 105 6 chr3 20002236 20002902 -139596881 + MTEa-int LTR MaLR 847 1578 -2 3 737 740 260 116 4 chr3 20002906 20003138 -139596645 + MTEa LTR MaLR 3 260 -119 3 737 25 0 0 0 chr3 20003736 20003761 -139596022 + AT_rich Low_complexity Low_complexity 1 25 0 1 737 1055 148 56 0 chr3 20004860 20005056 -139594727 + ORR1B2 LTR MaLR 1 207 -160 1 737 227 114 23 0 chr3 20005357 20005401 -139594382 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 737 25 0 0 0 chr3 20005882 20005907 -139593876 + AT_rich Low_complexity Low_complexity 1 25 0 1 737 469 250 132 46 chr3 20005908 20006059 -139593724 - RSINE1 SINE B4 0 165 2 1 737 41 0 0 0 chr3 20006811 20006852 -139592931 + AT_rich Low_complexity Low_complexity 1 41 0 1 737 1149 137 142 0 chr3 20007446 20007643 -139592140 - URR1A DNA MER1_type 0 226 2 1 737 1284 48 0 0 chr3 20008382 20008529 -139591254 + B1_Mm SINE Alu 1 147 0 1 737 420 111 0 0 chr3 20008529 20008592 -139591191 + (A)n Simple_repeat Simple_repeat 1 63 0 1 737 201 132 0 0 chr3 20009525 20009563 -139590220 + (CAAAA)n Simple_repeat Simple_repeat 4 41 0 1 737 311 141 85 49 chr3 20009596 20009678 -139590105 - MIRb SINE MIR -96 172 88 2 737 723 315 46 36 chr3 20010529 20010809 -139588974 - B4A SINE B4 0 292 10 2 737 592 253 125 11 chr3 20010856 20011032 -139588751 - B3A SINE B2 0 198 3 2 737 396 198 112 56 chr3 20011043 20011150 -139588633 - B1_Mus2 SINE Alu 0 120 8 2 737 229 162 152 59 chr3 20011187 20011305 -139588478 - Lx9 LINE L1 0 7644 7516 2 737 4369 136 91 77 chr3 20011327 20012250 -139587533 - RMER21A LTR ERV1 -9 938 3 2 737 1184 153 67 5 chr3 20012261 20012484 -139587299 - Lx9 LINE L1 -142 7502 7266 2 737 389 195 0 25 chr3 20012479 20012558 -139587225 + Lx9 LINE L1 7191 7267 -377 2 737 276 284 42 83 chr3 20013704 20013896 -139585887 - L1MB4 LINE L1 -37 6143 5960 2 737 377 177 0 48 chr3 20014903 20014986 -139584797 + B3A SINE B2 65 143 -55 2 737 261 43 64 0 chr3 20014994 20015041 -139584742 + (TC)n Simple_repeat Simple_repeat 2 51 0 2 737 198 71 0 0 chr3 20015041 20015069 -139584714 + (CA)n Simple_repeat Simple_repeat 1 28 0 2 737 713 293 45 5 chr3 20015163 20015362 -139584421 - B4 SINE B4 -36 256 50 3 737 282 355 35 23 chr3 20016011 20016184 -139583599 + RMER12 LTR ERVK 690 864 -458 3 737 23 54 0 0 chr3 20018334 20018371 -139581412 + AT_rich Low_complexity Low_complexity 1 37 0 3 737 1684 231 141 63 chr3 20019027 20019987 -139579796 - RMER17B LTR ERVK -9 899 1 3 737 4907 59 3 13 chr3 20020185 20020786 -139578997 + L1Md_F2 LINE L1 5987 6581 -1 3 737 469 319 24 18 chr3 20021072 20021241 -139578542 + MLT1F LTR MaLR 6 175 -373 3 737 21 0 0 0 chr3 20023629 20023650 -139576133 + AT_rich Low_complexity Low_complexity 1 21 0 3 737 495 222 104 1 chr3 20025898 20026080 -139573703 - L1MA6 LINE L1 -17 6274 6072 3 737 571 268 65 7 chr3 20026151 20026290 -139573493 + B3A SINE B2 24 170 -28 3 737 340 267 43 58 chr3 20026382 20026521 -139573262 - B4A SINE B4 -4 288 152 3 737 1003 202 49 5 chr3 20026674 20026858 -139572925 + B3 SINE B2 1 192 -24 4 737 418 303 27 33 chr3 20026955 20027105 -139572678 + B1F1 SINE Alu 1 149 0 4 737 182 276 217 54 chr3 20027363 20027455 -139572328 - MIRb SINE MIR -136 132 26 4 737 183 250 0 0 chr3 20027665 20027697 -139572086 - MIRm SINE MIR -24 252 221 4 737 472 183 192 0 chr3 20029248 20029352 -139570431 - URR1A DNA MER1_type -102 124 1 4 737 4838 184 46 89 chr3 20030466 20031540 -139568243 + RMER1A Other Other 2 881 -185 4 737 2575 107 0 0 chr3 20031540 20031867 -139567916 + ORR1A2 LTR MaLR 1 327 0 4 737 4838 181 56 32 chr3 20031867 20032094 -139567689 + RMER1A Other Other 820 1026 -4 4 737 396 91 0 0 chr3 20032401 20032467 -139567316 + (A)n Simple_repeat Simple_repeat 1 66 0 4 737 365 314 14 95 chr3 20033200 20033220 -139566563 + ID_B1 SINE B4 61 196 -28 4 737 555 229 0 78 chr3 20033220 20033348 -139566435 + B1F SINE Alu 1 118 -31 4 737 580 321 222 8 chr3 20033598 20034308 -139565475 + L2 LINE L2 1563 2424 -995 5 737 252 322 134 46 chr3 20034437 20034720 -139565063 - Lx8 LINE L1 -143 7330 7023 5 737 742 155 0 28 chr3 20037460 20037639 -139562144 + GA-rich Low_complexity Low_complexity 2 175 0 5 737 293 308 15 100 chr3 20038205 20038335 -139561448 - L2b LINE L2 -9 3378 3260 5 737 657 219 12 141 chr3 20038642 20038812 -139560971 + B1F SINE Alu 1 148 -1 5 737 312 27 0 0 chr3 20039056 20039093 -139560690 + (TG)n Simple_repeat Simple_repeat 2 38 0 5 737 229 259 35 0 chr3 20039563 20039621 -139560162 + MLT1A0 LTR MaLR 1 60 -314 5 737 275 377 72 10 chr3 20039644 20039837 -139559946 + MLT1A0 LTR MaLR 130 334 -31 5 737 1253 261 176 20 chr3 20040072 20040628 -139559155 + L1MD2 LINE L1 5701 6343 -16 5 737 21 36 0 0 chr3 20041096 20041124 -139558659 + AT_rich Low_complexity Low_complexity 1 28 0 5 737 317 305 0 0 chr3 20041468 20041550 -139558233 - ID2 SINE ID 0 83 2 5 737 444 319 29 0 chr3 20042087 20042225 -139557558 - ID_B1 SINE B4 -14 210 69 6 737 360 255 71 0 chr3 20043023 20043121 -139556662 + MER5A1 DNA MER1_type 30 134 -32 6 737 405 0 0 0 chr3 20043125 20043170 -139556613 + (CA)n Simple_repeat Simple_repeat 1 45 0 6 737 624 224 52 0 chr3 20045975 20046109 -139553674 - B1F2 SINE Alu -7 142 2 6 737 218 154 45 63 chr3 20046135 20046230 -139553553 + (TA)n Simple_repeat Simple_repeat 1 97 0 6 737 475 249 241 6 chr3 20046230 20046400 -139553383 + B3 SINE B2 2 211 -5 6 737 218 154 45 63 chr3 20046400 20046415 -139553368 + (TA)n Simple_repeat Simple_repeat 1 12 0 6 737 58 0 0 0 chr3 20046427 20046485 -139553298 + AT_rich Low_complexity Low_complexity 1 58 0 6 737 294 29 0 0 chr3 20047504 20047539 -139552244 + (GA)n Simple_repeat Simple_repeat 2 36 0 6 737 840 314 31 31 chr3 20047552 20047812 -139551971 - B4A SINE B4 -30 262 3 6 737 244 236 28 184 chr3 20047982 20048091 -139551692 + PB1D10 SINE Alu 29 120 0 7 737 287 264 123 65 chr3 20048466 20048604 -139551179 - B4A SINE B4 -146 146 1 7 737 215 333 0 0 chr3 20049023 20049080 -139550703 + ID4 SINE ID 27 83 0 7 737 1661 269 77 2 chr3 20049123 20049589 -139550194 + RLTR18B LTR ERVK 5 505 -7 7 737 579 202 9 9 chr3 20050138 20050243 -139549540 + ID_B1 SINE B4 116 220 -4 7 737 360 0 0 0 chr3 20050296 20050336 -139549447 + (TG)n Simple_repeat Simple_repeat 1 40 0 7 737 261 0 0 0 chr3 20050336 20050364 -139549419 + (GA)n Simple_repeat Simple_repeat 1 29 0 7 737 805 308 8 31 chr3 20051315 20051570 -139548213 - B4A SINE B4 -9 283 35 7 738 537 300 98 16 chr3 20055799 20055992 -139543791 + Tigger5 DNA MER2_type 4 212 -2194 7 738 854 96 8 8 chr3 20056588 20056714 -139543069 - B1_Mus1 SINE Alu 0 148 23 7 738 207 200 0 0 chr3 20057038 20057083 -139542700 + A-rich Low_complexity Low_complexity 1 45 0 8 738 1033 92 92 0 chr3 20057087 20057251 -139542532 + MTB_Mm LTR MaLR 1 179 -228 8 738 942 82 14 7 chr3 20057251 20057398 -139542385 + (GA)n Simple_repeat Simple_repeat 2 149 0 8 738 551 207 54 0 chr3 20057695 20057806 -139541977 + RSINE1 SINE B4 3 119 -46 8 738 2025 161 248 63 chr3 20058089 20058819 -139540964 + RMER6C LTR ERVK 1 714 -6 8 738 1420 54 5 11 chr3 20058940 20059126 -139540657 + B2_Mm2 SINE B2 2 186 -9 8 738 958 220 33 14 chr3 20059131 20059343 -139540440 - B3 SINE B2 0 216 1 8 738 384 43 0 0 chr3 20059731 20059778 -139540005 - ORR1A2 LTR MaLR -8 318 272 8 738 207 0 0 0 chr3 20059778 20059801 -139539982 + (T)n Simple_repeat Simple_repeat 1 23 0 8 738 1148 88 0 0 chr3 20059839 20059987 -139539796 - B1_Mus1 SINE Alu 0 148 1 8 738 10259 133 45 35 chr3 20059988 20061012 -139538771 - ORR1A2-int LTR MaLR -44 1919 58 8 738 1089 80 0 0 chr3 20061012 20061150 -139538633 + B1_Mm SINE Alu 1 138 -9 9 738 231 36 0 0 chr3 20061158 20061186 -139538597 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 9 738 10259 138 53 40 chr3 20061186 20061771 -139538012 - ORR1A2-int LTR MaLR -888 1075 463 8 738 3848 122 172 11 chr3 20061771 20062098 -139537685 - RMER17D2 LTR ERVK 0 809 485 9 738 798 41 0 0 chr3 20062098 20062196 -139537587 + (GA)n Simple_repeat Simple_repeat 1 98 0 9 738 3848 122 172 11 chr3 20062196 20062565 -139537218 - RMER17D2 LTR ERVK -325 484 1 9 738 10259 138 53 40 chr3 20062565 20063024 -139536759 - ORR1A2-int LTR MaLR -1501 462 1 8 738 2256 90 15 50 chr3 20063024 20063363 -139536420 - ORR1A2 LTR MaLR 0 327 1 8 738 4418 34 0 0 chr3 20063374 20063877 -139535906 + RLTR1C LTR ERV1 1 503 0 9 738 510 242 62 31 chr3 20064208 20064336 -139535447 + MT2B2 LTR ERVL 1 132 -401 9 738 550 240 39 0 chr3 20064355 20064484 -139535299 + MT2B2 LTR ERVL 91 224 -309 9 738 306 0 0 0 chr3 20064518 20064552 -139535231 + (TG)n Simple_repeat Simple_repeat 2 35 0 9 738 510 17 0 0 chr3 20064554 20064613 -139535170 + (GA)n Simple_repeat Simple_repeat 2 60 0 9 738 254 180 0 0 chr3 20064634 20064684 -139535099 + MT2B2 LTR ERVL 535 584 0 9 738 3831 204 82 18 chr3 20064694 20065716 -139534067 + MERVL_2A-int LTR ERVL 21 1174 -4587 9 738 358 158 51 38 chr3 20065732 20065811 -139533972 - B2_Mm2 SINE B2 0 195 116 9 738 944 263 35 73 chr3 20065810 20066151 -139533632 + MT2B2 LTR ERVL 257 584 0 9 738 864 280 44 49 chr3 20066849 20067258 -139532525 - L1M4 LINE L1 -887 5259 4853 1 738 1632 204 71 7 chr3 20067690 20068139 -139531644 + Lx9 LINE L1 7160 7637 -7 1 738 4746 147 14 24 chr3 20068222 20069018 -139530765 + Lx4A LINE L1 6271 7058 0 1 738 21 0 0 0 chr3 20069018 20069039 -139530744 + AT_rich Low_complexity Low_complexity 1 21 0 1 738 243 0 0 0 chr3 20069039 20069066 -139530717 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 738 562 292 8 30 chr3 20069129 20069263 -139530520 + RSINE1 SINE B4 18 148 -17 1 738 216 97 0 0 chr3 20069304 20069335 -139530448 + (TCTA)n Simple_repeat Simple_repeat 1 31 0 1 738 1378 57 0 0 chr3 20070190 20070367 -139529416 + L1Md_T LINE L1 6405 6581 -1 1 738 343 205 0 24 chr3 20070713 20070798 -139528985 - Lx5 LINE L1 -1189 5861 5779 1 738 1369 212 37 44 chr3 20070793 20071202 -139528581 - RMER1C Other Other -13 1329 924 1 738 3783 185 69 58 chr3 20071226 20072068 -139527715 - RMER13B LTR ERVK -53 855 5 1 738 1439 290 14 43 chr3 20072079 20072875 -139526908 - RMER1C Other Other -413 929 163 1 738 357 286 8 53 chr3 20073140 20073273 -139526510 - RMER1C Other Other -1038 304 178 1 738 1263 82 0 0 chr3 20073278 20073448 -139526335 + Lx LINE L1 6036 6205 -449 1 738 3323 219 77 58 chr3 20073447 20075265 -139524518 - L1_Mur3 LINE L1 -3646 2234 380 1 738 236 320 26 7 chr3 20075510 20075661 -139524122 - L1ME1 LINE L1 -238 5941 5788 1 738 826 194 22 11 chr3 20075725 20075907 -139523876 + Lx7 LINE L1 7253 7436 -260 1 738 307 293 13 26 chr3 20075917 20076068 -139523715 + (TATG)n Simple_repeat Simple_repeat 4 152 0 1 738 415 234 0 38 chr3 20076129 20076262 -139523521 + Lx7 LINE L1 7569 7696 0 1 738 1842 173 36 71 chr3 20076690 20077083 -139522700 - RLTR30 LTR ERV1 0 379 1 1 738 934 182 56 19 chr3 20077335 20077548 -139522235 - MTC-int LTR MaLR -1037 221 1 1 738 2035 173 79 10 chr3 20077548 20077940 -139521843 - MTC LTR MaLR 0 421 3 1 738 443 246 133 16 chr3 20078734 20078862 -139520921 + B1_Mur1 SINE Alu 1 143 -6 1 738 270 0 0 0 chr3 20079045 20079075 -139520708 + (TG)n Simple_repeat Simple_repeat 1 30 0 1 738 432 0 0 0 chr3 20079075 20079122 -139520661 + (GA)n Simple_repeat Simple_repeat 1 48 0 1 738 240 193 35 0 chr3 20079122 20079179 -139520604 + GA-rich Low_complexity Low_complexity 4 62 0 1 738 479 100 28 14 chr3 20079493 20079564 -139520219 + tRNA-Glu-GAG_ tRNA tRNA 1 72 -3 1 738 3833 42 8 41 chr3 20079610 20080101 -139519682 - IAPLTR2_Mm LTR ERVK 0 475 1 1 738 297 0 0 0 chr3 20080246 20080279 -139519504 + (GA)n Simple_repeat Simple_repeat 2 34 0 1 738 470 173 104 12 chr3 20080281 20080445 -139519338 + RMER17C LTR ERVK 95 273 -137 1 738 1147 215 106 14 chr3 20080769 20081061 -139518722 - RLTR30 LTR ERV1 0 379 61 1 738 258 32 0 0 chr3 20081589 20081620 -139518163 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1 738 579 256 137 36 chr3 20081879 20082098 -139517685 + RLTR18 LTR ERVK 43 283 -333 1 738 384 284 48 19 chr3 20082284 20082388 -139517395 - PB1D9 SINE Alu -7 113 7 1 738 244 326 11 33 chr3 20082307 20082399 -139517384 - ID_B1 SINE B4 -59 165 76 1 738 294 215 0 0 chr3 20082613 20082692 -139517091 + CT-rich Low_complexity Low_complexity 3 81 0 1 738 327 154 0 0 chr3 20082862 20082927 -139516856 + CT-rich Low_complexity Low_complexity 3 67 0 1 738 1168 184 13 27 chr3 20083809 20084033 -139515750 - URR1B DNA MER1_type -4 221 1 1 738 897 216 18 6 chr3 20084155 20084323 -139515460 - MTEb LTR MaLR 0 379 210 1 738 353 212 15 0 chr3 20084326 20084392 -139515391 - MTEa LTR MaLR -103 276 210 1 738 353 212 15 0 chr3 20084395 20084461 -139515322 - MTEa LTR MaLR -103 276 210 1 738 345 227 15 0 chr3 20084464 20084530 -139515253 - MTEa LTR MaLR -103 276 210 1 738 1212 254 30 0 chr3 20084533 20084801 -139514982 - MTEa LTR MaLR -103 276 1 1 738 230 205 11 152 chr3 20085077 20085169 -139514614 - MLT1A1 LTR MaLR -7 401 323 1 738 1172 273 81 14 chr3 20085224 20085570 -139514213 - ORR1D2 LTR MaLR -1 369 1 1 738 22 0 0 0 chr3 20085854 20085876 -139513907 + AT_rich Low_complexity Low_complexity 1 22 0 1 738 267 326 0 107 chr3 20085998 20086101 -139513682 - PB1D7 SINE Alu -28 92 1 1 738 712 268 74 47 chr3 20086101 20086342 -139513441 - L1MC LINE L1 -958 5188 4945 1 738 1020 67 11 53 chr3 20086342 20086530 -139513253 + (TATATG)n Simple_repeat Simple_repeat 1 180 0 1 738 712 268 74 47 chr3 20086530 20086652 -139513131 - L1MC LINE L1 -1202 4944 4815 1 738 234 174 0 0 chr3 20086836 20086882 -139512901 - L1_Mm LINE L1 -486 5397 5352 1 738 271 257 40 60 chr3 20086969 20087118 -139512665 - L1M2 LINE L1 -861 5282 5137 1 738 351 0 0 0 chr3 20087261 20087300 -139512483 + (TTTA)n Simple_repeat Simple_repeat 3 41 0 1 738 291 302 0 40 chr3 20087340 20087464 -139512319 - L1_Mur1 LINE L1 -862 5024 4906 1 738 492 223 51 6 chr3 20087441 20087599 -139512184 - L1MC LINE L1 -1354 4792 4628 1 738 753 300 81 49 chr3 20087671 20088015 -139511768 + MLT1A0 LTR MaLR 11 365 0 1 738 397 220 83 17 chr3 20088018 20088138 -139511645 - L1MC LINE L1 -1618 4528 4401 1 738 720 301 25 40 chr3 20088145 20088177 -139511606 - B3A SINE B2 0 198 170 1 738 384 59 0 0 chr3 20088177 20088228 -139511555 + (TG)n Simple_repeat Simple_repeat 1 51 0 1 738 720 301 25 40 chr3 20088228 20088396 -139511387 - B3A SINE B2 -29 169 1 1 738 335 250 100 0 chr3 20088396 20088516 -139511267 - L1MC LINE L1 -1729 4417 4286 1 738 424 317 33 46 chr3 20089820 20089972 -139509811 - RSINE1 SINE B4 -5 160 11 1 738 1305 78 0 0 chr3 20090011 20090216 -139509567 + (CA)n Simple_repeat Simple_repeat 1 205 0 1 738 213 208 38 0 chr3 20091250 20091303 -139508480 + CT-rich Low_complexity Low_complexity 1 55 0 1 738 281 254 0 17 chr3 20091341 20091401 -139508382 - RMER15 LTR ERVL -113 462 404 1 738 24 32 0 0 chr3 20091521 20091552 -139508231 + AT_rich Low_complexity Low_complexity 1 31 0 1 738 1184 97 16 36 chr3 20091586 20091778 -139508005 - B2_Mm2 SINE B2 -6 189 2 1 738 1640 26 5 0 chr3 20091886 20092077 -139507706 - B2_Mm1t SINE B2 0 193 2 1 738 6642 140 16 10 chr3 20092587 20094392 -139505391 + Lx LINE L1 4834 6654 0 1 738 234 0 0 0 chr3 20094871 20094897 -139504886 + (GTTTG)n Simple_repeat Simple_repeat 5 30 0 1 738 552 318 84 53 chr3 20095371 20095597 -139504186 + B4 SINE B4 53 285 -7 1 738 381 74 52 21 chr3 20098865 20098962 -139500821 + (CAAAA)n Simple_repeat Simple_repeat 2 101 0 1 738 585 194 174 0 chr3 20099433 20099588 -139500195 - B3 SINE B2 -3 213 32 1 738 350 263 8 136 chr3 20099792 20099924 -139499859 - RLTR11A2 LTR ERVK -406 121 7 1 738 2173 96 19 0 chr3 20099928 20100241 -139499542 + ORR1A2 LTR MaLR 1 319 -8 1 738 611 130 28 7 chr3 20100724 20100854 -139498929 - MTB LTR MaLR -6 401 267 1 738 2551 218 16 32 chr3 20100860 20101429 -139498354 + Lx6 LINE L1 6731 7290 -170 1 738 423 56 0 0 chr3 20101435 20101489 -139498294 + (TGAA)n Simple_repeat Simple_repeat 3 56 0 1 738 378 269 19 0 chr3 20101532 20101636 -139498147 + Lx7 LINE L1 7193 7298 -398 1 738 29 70 0 0 chr3 20101862 20101919 -139497864 + AT_rich Low_complexity Low_complexity 1 57 0 1 738 3830 179 37 21 chr3 20102119 20103162 -139496621 - Lx6 LINE L1 -1364 6096 5019 1 738 333 300 41 8 chr3 20103162 20103283 -139496500 - RMER10B LTR ERVL 0 398 274 1 738 2000 218 35 2 chr3 20104251 20104647 -139495136 + MTD LTR MaLR 9 417 -2 1 738 229 204 23 0 chr3 20104788 20104832 -139494951 + CT-rich Low_complexity Low_complexity 2 46 0 1 738 2136 113 44 12 chr3 20105343 20105683 -139494100 - Lx LINE L1 -202 6452 6102 1 738 6991 57 37 8 chr3 20105683 20106603 -139493180 + RLTR13D3 LTR ERVK 1 947 -167 1 738 1056 16 0 0 chr3 20106603 20106725 -139493058 + (TTC)n Simple_repeat Simple_repeat 2 123 0 1 738 273 397 7 26 chr3 20107238 20107393 -139492390 - RSINE1 SINE B4 -2 163 12 1 738 208 254 138 20 chr3 20107481 20107587 -139492196 - MIRm SINE MIR -134 142 28 1 738 225 316 13 13 chr3 20107788 20107865 -139491918 + ID SINE ID 2 78 -146 1 738 1068 124 42 36 chr3 20107985 20108180 -139491603 + RLTR13D3 LTR ERVK 940 1114 0 1 738 361 135 13 17 chr3 20108180 20108249 -139491534 - Lx LINE L1 -547 6107 6052 1 738 1893 212 79 6 chr3 20108440 20108910 -139490873 - Lx6 LINE L1 -1 7459 6956 1 738 27857 58 7 6 chr3 20108957 20115066 -139484717 - L1Md_F3 LINE L1 -14 6570 465 1 738 269 51 0 25 chr3 20115074 20115114 -139484669 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 1 738 659 272 180 63 chr3 20115982 20116237 -139483546 + B4A SINE B4 8 292 0 1 738 24 0 0 0 chr3 20116253 20116277 -139483506 + AT_rich Low_complexity Low_complexity 1 24 0 1 738 238 305 28 9 chr3 20117496 20117602 -139482181 - L1MDa LINE L1 -4561 2072 1965 1 738 1626 231 112 70 chr3 20117877 20118181 -139481602 - Lx6 LINE L1 -1 7459 7152 1 738 501 32 0 0 chr3 20118181 20118244 -139481539 + (CA)n Simple_repeat Simple_repeat 2 64 0 1 738 318 26 0 0 chr3 20118247 20118286 -139481497 + (CAAAC)n Simple_repeat Simple_repeat 1 39 0 1 738 1626 231 112 70 chr3 20118286 20118475 -139481308 - Lx6 LINE L1 -309 7151 6941 1 738 286 278 121 11 chr3 20118870 20118961 -139480822 + MER58B DNA MER1_type 196 296 -45 1 738 25 51 0 0 chr3 20119778 20119817 -139479966 + AT_rich Low_complexity Low_complexity 1 39 0 1 738 841 250 19 19 chr3 20119949 20120157 -139479626 - B3 SINE B2 -6 210 3 1 738 21 36 0 0 chr3 20120614 20120642 -139479141 + AT_rich Low_complexity Low_complexity 1 28 0 1 738 596 194 56 35 chr3 20121538 20121682 -139478101 + B1F SINE Alu 2 148 -1 1 738 1020 47 46 6 chr3 20121727 20121900 -139477883 + (GA)n Simple_repeat Simple_repeat 1 180 0 1 738 414 0 0 0 chr3 20121933 20121979 -139477804 + (TTTA)n Simple_repeat Simple_repeat 4 49 0 1 738 697 302 70 9 chr3 20123288 20123619 -139476164 + Lx7 LINE L1 6948 7298 -398 1 738 222 37 0 0 chr3 20123636 20123663 -139476120 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 1 738 763 279 98 43 chr3 20125608 20125863 -139473920 - B4A SINE B4 -16 276 8 1 738 252 172 0 0 chr3 20126054 20126112 -139473671 + (CAAAG)n Simple_repeat Simple_repeat 2 59 0 2 738 288 0 0 0 chr3 20126183 20126215 -139473568 + (TG)n Simple_repeat Simple_repeat 1 32 0 2 738 471 60 0 0 chr3 20126218 20126285 -139473498 + (GA)n Simple_repeat Simple_repeat 1 67 0 2 738 210 122 0 47 chr3 20127378 20127421 -139472362 + (CAAA)n Simple_repeat Simple_repeat 2 42 0 2 738 663 309 10 26 chr3 20127427 20127595 -139472188 + B3A SINE B2 1 169 -29 2 738 387 105 0 0 chr3 20127595 20127652 -139472131 + (CATA)n Simple_repeat Simple_repeat 2 58 0 2 738 663 309 10 26 chr3 20127652 20127676 -139472107 + B3A SINE B2 170 190 -8 2 738 552 312 51 0 chr3 20127702 20127840 -139471943 + RSINE1 SINE B4 7 151 -14 2 738 411 262 96 12 chr3 20129315 20129481 -139470302 + Charlie5 DNA MER1_type 2433 2612 -12 2 738 25 51 0 0 chr3 20130128 20130167 -139469616 + AT_rich Low_complexity Low_complexity 1 39 0 2 738 426 300 46 8 chr3 20130170 20130301 -139469482 - RSINE1 SINE B4 -29 136 1 2 738 30 0 0 0 chr3 20130820 20130850 -139468933 + AT_rich Low_complexity Low_complexity 1 30 0 2 738 582 54 0 0 chr3 20130990 20131064 -139468719 + (TTC)n Simple_repeat Simple_repeat 2 75 0 2 738 255 341 54 23 chr3 20131825 20131954 -139467829 + MIRb SINE MIR 56 188 -80 2 738 188 336 40 72 chr3 20132866 20132991 -139466792 + L3 LINE CR1 2112 2232 -2257 2 738 261 243 0 0 chr3 20133460 20133530 -139466253 + (TATG)n Simple_repeat Simple_repeat 4 73 0 2 738 620 26 13 0 chr3 20133530 20133608 -139466175 + (GA)n Simple_repeat Simple_repeat 1 79 0 2 738 200 135 27 0 chr3 20134469 20134506 -139465277 + T-rich Low_complexity Low_complexity 4 41 0 2 738 1302 269 109 72 chr3 20135697 20136291 -139463492 + RLTR18 LTR ERVK 1 616 0 2 738 357 24 0 0 chr3 20136471 20136513 -139463270 + (T)n Simple_repeat Simple_repeat 1 42 0 2 738 896 50 0 0 chr3 20136513 20136632 -139463151 - B1_Mm SINE Alu 0 147 29 2 738 405 0 0 0 chr3 20136909 20136954 -139462829 + (CA)n Simple_repeat Simple_repeat 2 46 0 2 738 528 234 38 67 chr3 20137220 20137404 -139462379 + Lx9 LINE L1 5812 6001 -1695 2 738 1024 269 141 46 chr3 20137426 20137903 -139461880 + Lx9 LINE L1 6097 6752 -892 2 738 199 151 75 0 chr3 20137922 20137975 -139461808 + CT-rich Low_complexity Low_complexity 4 60 0 2 738 1026 141 0 0 chr3 20137994 20138164 -139461619 + (TTTC)n Simple_repeat Simple_repeat 4 173 0 2 738 362 115 0 16 chr3 20138164 20138226 -139461557 + (CCCCCT)n Simple_repeat Simple_repeat 6 66 0 2 738 787 167 16 0 chr3 20138257 20138383 -139461400 - B1_Mur2 SINE Alu -20 129 2 2 738 233 342 0 0 chr3 20138388 20138461 -139461322 + Lx8 LINE L1 6610 6682 -791 2 738 607 165 26 0 chr3 20138479 20138594 -139461189 - URR1B DNA MER1_type -25 200 83 2 738 1251 349 33 40 chr3 20138639 20139368 -139460415 + Lx8 LINE L1 6731 7454 -19 2 738 332 317 211 30 chr3 20139635 20139801 -139459982 + B4A SINE B4 78 273 -19 2 738 579 323 0 79 chr3 20142514 20142692 -139457091 - RSINE1 SINE B4 0 165 2 2 738 22 35 0 0 chr3 20142768 20142797 -139456986 + AT_rich Low_complexity Low_complexity 1 29 0 2 738 802 153 80 0 chr3 20142797 20142934 -139456849 - B1_Mus1 SINE Alu 0 148 1 2 738 1266 100 0 0 chr3 20143001 20143364 -139456419 + (TTC)n Simple_repeat Simple_repeat 1 363 0 2 738 849 71 0 0 chr3 20143364 20143477 -139456306 + (TCC)n Simple_repeat Simple_repeat 2 114 0 2 738 22 35 0 0 chr3 20143603 20143632 -139456151 + AT_rich Low_complexity Low_complexity 1 29 0 2 738 355 281 0 0 chr3 20144345 20144427 -139455356 + RSINE1 SINE B4 36 117 -48 2 738 726 117 0 0 chr3 20144734 20144845 -139454938 + (TTCC)n Simple_repeat Simple_repeat 3 113 0 2 738 465 19 0 0 chr3 20145289 20145343 -139454440 + (TC)n Simple_repeat Simple_repeat 1 54 0 2 738 377 163 12 0 chr3 20145354 20145440 -139454343 - L1Md_A LINE L1 -4 6578 6492 2 738 432 54 0 0 chr3 20145440 20145496 -139454287 + L1_Mus1 LINE L1 6058 6113 -454 2 738 452 18 0 17 chr3 20145722 20145780 -139454003 + (TAA)n Simple_repeat Simple_repeat 2 58 0 2 738 195 42 0 0 chr3 20146459 20146483 -139453300 + (ATTG)n Simple_repeat Simple_repeat 1 24 0 2 738 401 253 43 11 chr3 20146483 20146575 -139453208 - RSINE1 SINE B4 -4 161 67 2 738 1514 64 5 0 chr3 20146689 20146893 -139452890 - L1_Mus2 LINE L1 0 6566 6362 2 738 38 0 0 0 chr3 20147786 20147824 -139451959 + AT_rich Low_complexity Low_complexity 1 38 0 2 738 222 62 0 0 chr3 20148082 20148114 -139451669 + (CA)n Simple_repeat Simple_repeat 2 33 0 2 738 281 211 59 18 chr3 20148790 20148959 -139450824 + (TTATA)n Simple_repeat Simple_repeat 2 177 0 2 738 333 0 0 0 chr3 20148982 20149019 -139450764 + (CA)n Simple_repeat Simple_repeat 1 37 0 2 738 319 212 36 36 chr3 20150126 20150209 -139449574 - ID4 SINE ID 0 83 1 2 738 218 319 74 49 chr3 20150303 20150425 -139449358 - L2b LINE L2 -1 3374 3250 2 738 363 254 0 14 chr3 20150853 20150925 -139448858 - B3 SINE B2 -81 135 65 2 738 343 320 13 13 chr3 20151088 20151240 -139448543 - Lx7 LINE L1 -1790 5906 5755 2 738 228 283 0 0 chr3 20152931 20152984 -139446799 - PB1D10 SINE Alu -21 96 44 2 738 831 96 22 0 chr3 20154975 20155111 -139444672 + (TC)n Simple_repeat Simple_repeat 2 140 0 2 738 275 229 102 71 chr3 20155127 20155254 -139444529 - MER20 DNA MER1_type -54 165 35 2 738 425 290 73 17 chr3 20155411 20155590 -139444193 + MER53 DNA hAT 1 189 -4 2 738 275 164 0 16 chr3 20155850 20155912 -139443871 + CT-rich Low_complexity Low_complexity 2 62 0 2 738 566 228 47 0 chr3 20155952 20156078 -139443705 - B1_Mur2 SINE Alu -1 148 15 2 738 5978 156 15 36 chr3 20156482 20157045 -139442738 + Lx6 LINE L1 4762 5304 -576 2 738 1099 83 14 0 chr3 20157045 20157190 -139442593 - B1_Mus1 SINE Alu 0 148 2 2 738 5978 197 44 81 chr3 20157190 20158142 -139441641 + Lx6 LINE L1 5305 6308 -1388 2 738 686 201 0 59 chr3 20158142 20158295 -139441488 + ORR1B2 LTR MaLR 1 144 -223 2 738 5978 197 44 81 chr3 20158295 20158458 -139441325 + Lx6 LINE L1 6309 6482 -1214 2 738 8067 43 8 0 chr3 20158458 20159446 -139440337 + L1Md_F2 LINE L1 5587 6582 0 2 738 5106 216 50 25 chr3 20159446 20160404 -139439379 + Lx6 LINE L1 6467 7457 -3 2 738 22 35 0 0 chr3 20160701 20160730 -139439053 + AT_rich Low_complexity Low_complexity 1 29 0 2 738 544 246 102 46 chr3 20160796 20160992 -139438791 + ORR1E LTR MaLR 153 359 0 2 738 449 110 14 0 chr3 20161149 20161222 -139438561 + (CA)n Simple_repeat Simple_repeat 1 74 0 2 738 234 0 0 0 chr3 20161538 20161564 -139438219 + (A)n Simple_repeat Simple_repeat 1 26 0 2 738 906 39 24 0 chr3 20161700 20161827 -139437956 + (TCTA)n Simple_repeat Simple_repeat 4 133 0 2 738 22 56 0 0 chr3 20162089 20162125 -139437658 + AT_rich Low_complexity Low_complexity 1 36 0 2 738 416 339 20 30 chr3 20162978 20163179 -139436604 - L1MD3 LINE L1 -42 7953 7755 2 738 406 269 46 0 chr3 20163210 20163318 -139436465 - ID_B1 SINE B4 -18 206 94 2 738 497 311 58 9 chr3 20163502 20163845 -139435938 - L1MD3 LINE L1 -505 7377 7020 2 738 230 226 24 0 chr3 20164094 20164178 -139435605 + (TATG)n Simple_repeat Simple_repeat 1 86 0 2 738 936 126 0 14 chr3 20165793 20165938 -139433845 - B2_Mm2 SINE B2 0 195 53 2 738 324 0 0 0 chr3 20165947 20165983 -139433800 + (TAA)n Simple_repeat Simple_repeat 2 37 0 2 738 1093 211 10 5 chr3 20166241 20166446 -139433337 - B3 SINE B2 -9 207 2 2 738 682 263 34 22 chr3 20167531 20167710 -139432073 + B3A SINE B2 2 182 -16 2 738 190 337 56 11 chr3 20167869 20167959 -139431824 - MIRc SINE MIR -111 157 64 2 738 229 248 116 124 chr3 20168126 20168255 -139431528 - RMER6D LTR ERVK -6 714 587 2 738 315 191 0 0 chr3 20168687 20168750 -139431033 + CT-rich Low_complexity Low_complexity 2 64 0 2 738 652 294 44 60 chr3 20169502 20169752 -139430031 + B4A SINE B4 39 284 -8 2 738 238 287 77 29 chr3 20170885 20170989 -139428794 + L3 LINE CR1 1972 2080 -2409 2 738 585 317 30 5 chr3 20171011 20171214 -139428569 + ID_B1 SINE B4 5 212 -12 2 738 212 311 108 26 chr3 20171598 20171793 -139427990 + L3 LINE CR1 2466 2676 -1813 2 738 284 250 122 20 chr3 20172107 20172205 -139427578 - MIR SINE MIR -47 215 108 2 738 399 271 13 5 chr3 20172321 20172419 -139427364 + B3 SINE B2 27 123 -93 2 738 210 304 0 28 chr3 20173526 20173585 -139426198 + (TGGA)n Simple_repeat Simple_repeat 4 61 0 2 738 441 0 0 0 chr3 20173585 20173634 -139426149 + (TG)n Simple_repeat Simple_repeat 2 50 0 2 738 210 304 0 28 chr3 20173634 20173645 -139426138 + (TGGA)n Simple_repeat Simple_repeat 2 12 0 2 738 597 313 108 18 chr3 20174860 20175406 -139424377 - L1ME2 LINE L1 -21 6143 5550 2 738 307 326 144 10 chr3 20175418 20175613 -139424170 - L1ME2 LINE L1 -1405 4741 4521 2 738 333 357 119 89 chr3 20175679 20176048 -139423735 - LTR40a LTR ERVL -40 479 100 2 738 270 231 0 0 chr3 20176995 20177060 -139422723 + (CATA)n Simple_repeat Simple_repeat 3 67 0 2 738 587 168 0 8 chr3 20177065 20177185 -139422598 + (TG)n Simple_repeat Simple_repeat 2 120 0 2 738 270 218 18 0 chr3 20177194 20177247 -139422536 - MTC LTR MaLR 0 419 366 2 738 533 31 0 0 chr3 20177247 20177312 -139422471 - RLTR45 LTR ERVK 0 482 418 2 738 303 24 0 0 chr3 20177313 20177355 -139422428 - L1_Mm LINE L1 -1207 4676 4635 2 738 8111 39 7 1 chr3 20177361 20178351 -139421432 + L1Md_F2 LINE L1 5587 6582 0 2 738 2225 117 67 45 chr3 20178356 20178777 -139421006 - RLTR45 LTR ERVK -52 430 1 2 738 2020 147 88 8 chr3 20178777 20179122 -139420661 - MTC LTR MaLR -48 373 1 2 738 391 274 0 0 chr3 20179122 20179195 -139420588 - RSINE1 SINE B4 -25 140 68 2 738 227 329 27 74 chr3 20179294 20179442 -139420341 + RLTR20D LTR ERVK 76 216 -352 2 738 453 19 0 0 chr3 20180008 20180062 -139419721 + (GA)n Simple_repeat Simple_repeat 2 55 0 2 738 225 340 67 10 chr3 20180255 20180359 -139419424 - PB1D9 SINE Alu 0 120 11 2 738 1788 175 12 43 chr3 20180621 20181020 -139418763 - L1_Mur2 LINE L1 -208 5669 5283 2 738 397 198 0 0 chr3 20181028 20181109 -139418674 + Lx4B LINE L1 6858 6938 -120 2 738 3139 192 48 25 chr3 20181112 20182449 -139417334 + L1_Mur3 LINE L1 517 1875 -4005 3 738 4471 67 12 2 chr3 20182629 20183210 -139416573 - L1_Mus3 LINE L1 -6 6632 6046 3 738 30 45 0 0 chr3 20183449 20183493 -139416290 + AT_rich Low_complexity Low_complexity 1 44 0 3 738 265 265 24 12 chr3 20183538 20183622 -139416161 + CT-rich Low_complexity Low_complexity 4 88 0 3 738 762 303 5 13 chr3 20183623 20183847 -139415936 - ID_B1 SINE B4 -2 222 1 3 738 303 258 102 11 chr3 20183999 20184129 -139415654 + MER34A1 LTR ERV1 4 144 -443 3 738 330 281 12 0 chr3 20184379 20184461 -139415322 + ID2 SINE ID 1 83 0 3 738 342 0 0 0 chr3 20184494 20184532 -139415251 + (CCAA)n Simple_repeat Simple_repeat 2 39 0 3 738 1075 92 37 0 chr3 20184852 20185016 -139414767 - ORR1A3 LTR MaLR 0 326 157 3 739 257 261 146 69 chr3 20185262 20185406 -139414377 - RSINE1 SINE B4 -7 158 4 3 739 742 226 51 23 chr3 20186574 20186791 -139412992 + RCHARR1 DNA MER1_type 500 722 -252 3 739 189 0 0 0 chr3 20186876 20186897 -139412886 + (T)n Simple_repeat Simple_repeat 1 21 0 3 739 537 16 0 0 chr3 20187038 20187100 -139412683 + (TA)n Simple_repeat Simple_repeat 2 63 0 3 739 198 240 0 0 chr3 20187100 20187150 -139412633 + (TG)n Simple_repeat Simple_repeat 2 51 0 3 739 192 155 82 49 chr3 20187417 20187478 -139412305 + L3 LINE CR1 906 968 -3521 3 739 23 54 0 0 chr3 20188519 20188556 -139411227 + AT_rich Low_complexity Low_complexity 1 37 0 3 739 791 179 8 0 chr3 20188563 20188697 -139411086 - B1_Mur1 SINE Alu -9 140 6 3 739 500 274 7 40 chr3 20188697 20188708 -139411075 - ID_B1 SINE B4 -2 175 76 3 739 187 191 0 78 chr3 20188753 20188804 -139410979 - MIRm SINE MIR -9 267 221 3 739 504 130 0 0 chr3 20188891 20188983 -139410800 + (CAT)n Simple_repeat Simple_repeat 1 92 0 3 739 25 0 0 0 chr3 20189372 20189397 -139410386 + AT_rich Low_complexity Low_complexity 1 25 0 3 739 3022 76 75 19 chr3 20190186 20190600 -139409183 - RLTR9B LTR ERVK 0 437 1 3 739 704 287 77 29 chr3 20191006 20191214 -139408569 - MTE2a LTR MaLR -25 354 137 3 739 359 309 32 58 chr3 20191237 20191426 -139408357 - RLTR23 LTR ERV1 0 430 247 3 739 287 221 54 75 chr3 20191754 20191847 -139407936 + RLTR23 LTR ERV1 340 430 0 3 739 2315 110 71 92 chr3 20191861 20192353 -139407430 - RLTR45 LTR ERVK 0 482 1 3 739 1710 131 34 179 chr3 20192365 20192830 -139406953 - RMER10B LTR ERVL 0 398 1 3 739 443 353 21 25 chr3 20193033 20193271 -139406512 + Charlie4a DNA MER1_type 4 240 -268 3 739 22 70 0 0 chr3 20194363 20194406 -139405377 + AT_rich Low_complexity Low_complexity 1 43 0 3 739 472 315 259 11 chr3 20195484 20195741 -139404042 + ORR1D2 LTR MaLR 6 355 -15 3 739 1688 104 47 32 chr3 20196041 20196319 -139403464 - Lx LINE L1 -6 6648 6367 3 739 3509 18 2 0 chr3 20196443 20196838 -139402945 - MTA_Mm LTR MaLR 0 396 1 3 739 414 100 0 0 chr3 20197549 20197609 -139402174 + (TAGA)n Simple_repeat Simple_repeat 4 63 0 3 739 309 109 0 0 chr3 20198167 20198213 -139401570 + (TA)n Simple_repeat Simple_repeat 2 47 0 3 739 7488 62 0 1 chr3 20198583 20199807 -139399976 + L1Md_F2 LINE L1 5337 6559 -23 3 739 3439 35 0 0 chr3 20199807 20200203 -139399580 - MTA_Mm LTR MaLR 0 396 1 3 739 12193 78 3 55 chr3 20200215 20202856 -139396927 - L1Md_A LINE L1 -2982 2901 447 3 739 1709 199 16 21 chr3 20202865 20203250 -139396533 - Lx5 LINE L1 -1081 5969 5587 3 739 484 199 93 62 chr3 20203264 20203372 -139396411 + Lx6 LINE L1 6191 6308 -742 3 739 3023 92 2 2 chr3 20203372 20203777 -139396006 - MTB_Mm LTR MaLR -2 405 1 3 739 484 199 93 62 chr3 20203777 20203829 -139395954 + Lx6 LINE L1 6309 6356 -694 3 739 1241 287 113 12 chr3 20204590 20205116 -139394667 + Lx6 LINE L1 6507 7460 0 3 739 2082 215 16 8 chr3 20205369 20205946 -139393837 + Lx4B LINE L1 6307 6974 -84 3 739 641 276 12 47 chr3 20206782 20206953 -139392830 - RSINE1 SINE B4 0 165 1 3 739 441 298 110 18 chr3 20207532 20207696 -139392087 - MER20 DNA MER1_type -9 210 32 3 739 1224 160 25 8 chr3 20209230 20209500 -139390283 - L1_Mur3 LINE L1 -886 5414 5107 3 739 743 174 6 67 chr3 20209501 20209680 -139390103 - RMER17C LTR ERVK -242 168 1 3 739 5262 182 85 12 chr3 20209680 20210957 -139388826 - L1_Mur3 LINE L1 -1517 4363 2994 3 739 632 124 9 0 chr3 20210957 20211062 -139388721 + (TTTC)n Simple_repeat Simple_repeat 3 108 0 3 739 431 157 36 0 chr3 20211062 20211145 -139388638 - L1_Mur3 LINE L1 -2872 3008 2923 3 739 1378 225 58 11 chr3 20211137 20211497 -139388286 - L1_Mur3 LINE L1 -7047 681 305 3 739 26 0 0 0 chr3 20212249 20212275 -139387508 + AT_rich Low_complexity Low_complexity 1 26 0 3 739 21 57 0 0 chr3 20212717 20212752 -139387031 + AT_rich Low_complexity Low_complexity 1 35 0 3 739 511 256 112 32 chr3 20212923 20213048 -139386735 + RSINE1 SINE B4 6 140 -25 3 739 907 151 10 98 chr3 20213135 20213340 -139386443 + B2_Mm2 SINE B2 1 187 -8 3 739 334 0 43 0 chr3 20214029 20214075 -139385708 + (CAA)n Simple_repeat Simple_repeat 1 48 0 3 739 579 29 0 0 chr3 20216597 20216666 -139383117 + (TC)n Simple_repeat Simple_repeat 2 70 0 3 739 6758 98 21 10 chr3 20216835 20217874 -139381909 - L1_Mus3 LINE L1 0 6638 5588 3 739 18672 109 28 9 chr3 20217882 20221751 -139378032 - L1Md_F2 LINE L1 0 6582 2638 3 739 344 22 22 0 chr3 20221883 20221928 -139377855 + (TTTTA)n Simple_repeat Simple_repeat 1 46 0 3 739 1450 210 153 9 chr3 20222601 20222947 -139376836 + MTC LTR MaLR 18 413 -8 3 739 418 250 131 21 chr3 20224461 20224684 -139375099 + L1MA6 LINE L1 6028 6284 -16 3 739 192 328 57 74 chr3 20224831 20224953 -139374830 + MIRc SINE MIR 32 151 -117 3 739 281 109 0 18 chr3 20225913 20225969 -139373814 + (CCAA)n Simple_repeat Simple_repeat 1 55 0 3 739 519 279 22 7 chr3 20226120 20226257 -139373526 - RSINE1 SINE B4 0 165 27 3 739 2052 116 54 6 chr3 20226513 20226844 -139372939 + L1_Mus4 LINE L1 6290 6636 0 3 739 627 219 47 47 chr3 20227256 20227428 -139372355 - B3A SINE B2 0 198 27 3 739 288 0 0 0 chr3 20227447 20227479 -139372304 + (TC)n Simple_repeat Simple_repeat 2 33 0 3 739 187 386 0 0 chr3 20227819 20227889 -139371894 + MIRc SINE MIR 56 125 -143 3 739 791 212 87 15 chr3 20228727 20228923 -139370860 - B3 SINE B2 -6 210 1 3 739 503 164 279 0 chr3 20229197 20229301 -139370482 + B2_Mm2 SINE B2 3 135 -60 3 739 1334 30 12 0 chr3 20229309 20229475 -139370308 + (TTTC)n Simple_repeat Simple_repeat 2 169 0 3 739 1094 52 0 0 chr3 20229476 20229610 -139370173 - B1_Mm SINE Alu -13 134 1 3 739 198 143 0 0 chr3 20229773 20229808 -139369975 + (ATTG)n Simple_repeat Simple_repeat 2 36 0 3 739 703 229 29 77 chr3 20229815 20229871 -139369912 - RSINE1 SINE B4 0 165 122 3 739 4209 110 29 70 chr3 20229871 20230654 -139369129 + RMER17A LTR ERVK 1 751 0 3 739 703 229 29 77 chr3 20230654 20230767 -139369016 - RSINE1 SINE B4 -44 121 4 3 739 482 291 85 63 chr3 20231003 20231319 -139368464 - MER33 DNA MER1_type 0 324 2 3 739 331 254 93 43 chr3 20231346 20231486 -139368297 + MER5A DNA MER1_type 18 164 -25 3 739 204 40 0 0 chr3 20232243 20232268 -139367515 + (TA)n Simple_repeat Simple_repeat 2 26 0 3 739 23 33 0 0 chr3 20233360 20233390 -139366393 + AT_rich Low_complexity Low_complexity 1 30 0 3 739 642 138 0 0 chr3 20234138 20234247 -139365536 + (TC)n Simple_repeat Simple_repeat 1 109 0 3 739 735 256 34 11 chr3 20235080 20235258 -139364525 - B3A SINE B2 0 198 17 3 739 601 301 48 0 chr3 20235421 20235627 -139364156 - ID_B1 SINE B4 -4 220 5 3 739 22 0 0 0 chr3 20236538 20236560 -139363223 + AT_rich Low_complexity Low_complexity 1 22 0 3 739 646 297 100 40 chr3 20237766 20238054 -139361729 + Lx9 LINE L1 6922 7323 -321 3 739 1532 258 77 3 chr3 20238129 20238517 -139361266 - MTD LTR MaLR 0 419 3 3 739 448 279 44 10 chr3 20239289 20239492 -139360291 - L1MEc LINE L1 -5547 853 644 3 739 466 337 66 36 chr3 20239545 20239908 -139359875 - L1MEc LINE L1 -5993 407 34 3 739 4381 100 2 5 chr3 20240231 20240835 -139358948 + L1_Mus1 LINE L1 5966 6567 0 3 739 11263 210 65 121 chr3 20241130 20242127 -139357656 + Lx2B LINE L1 2258 3252 -2634 3 739 710 269 145 34 chr3 20242127 20242423 -139357360 + RLTR17 LTR ERVK 69 397 -295 3 739 11263 210 65 121 chr3 20242423 20242434 -139357349 + Lx2B LINE L1 3253 3262 -2624 3 739 424 228 169 8 chr3 20242434 20242558 -139357225 + RLTR17 LTR ERVK 470 613 -79 3 739 11263 210 65 121 chr3 20242558 20242768 -139357015 + Lx2B LINE L1 3263 3475 -2411 3 739 207 0 0 0 chr3 20242768 20242791 -139356992 + (CCAA)n Simple_repeat Simple_repeat 3 25 0 3 739 11263 171 84 23 chr3 20242791 20242826 -139356957 + Lx2B LINE L1 3476 3493 -2393 3 739 282 95 0 0 chr3 20242826 20242868 -139356915 + (CCAA)n Simple_repeat Simple_repeat 2 43 0 3 739 11263 165 79 20 chr3 20242868 20245174 -139354609 + Lx2B LINE L1 3494 5972 -1028 3 739 3127 191 30 80 chr3 20245186 20245807 -139353976 + MusHAL1 LINE L1 562 1168 -2747 3 739 1117 58 0 0 chr3 20245807 20245945 -139353838 + B1_Mm SINE Alu 1 138 -9 3 739 26626 133 23 8 chr3 20245945 20250456 -139349327 + MusHAL1 LINE L1 1169 5724 -159 3 739 3924 101 53 1 chr3 20250456 20251073 -139348710 + L1_Mus3 LINE L1 5535 6175 -463 3 739 1339 96 54 9 chr3 20251073 20251295 -139348488 + L1_Mus3 LINE L1 6395 6626 -12 3 739 810 30 0 0 chr3 20251297 20251398 -139348385 + (GGGAGA)n Simple_repeat Simple_repeat 3 103 0 3 739 906 139 11 53 chr3 20251400 20251590 -139348193 + Lx2B LINE L1 5971 6152 -848 3 739 425 243 85 0 chr3 20251592 20251761 -139348022 + MYSERV16_I-int LTR ERVK 2154 2324 -2 3 739 478 58 14 0 chr3 20251762 20251826 -139347957 + RLTR15 LTR ERVK 1 65 -294 3 739 875 191 21 21 chr3 20251826 20252013 -139347770 + B2_Mm2 SINE B2 2 188 -7 3 739 1655 150 37 0 chr3 20252008 20252308 -139347475 + RLTR15 LTR ERVK 49 359 0 3 739 1615 220 82 18 chr3 20252800 20253189 -139346594 - MTD LTR MaLR -5 414 1 3 739 406 290 0 0 chr3 20253505 20253598 -139346185 + PB1D10 SINE Alu 19 111 -6 3 739 597 83 0 0 chr3 20254204 20254288 -139345495 + (TA)n Simple_repeat Simple_repeat 2 85 0 3 739 1812 253 45 10 chr3 20254303 20254821 -139344962 - Lx9 LINE L1 -3 7641 6919 3 739 320 352 45 56 chr3 20255873 20256141 -139343642 - L1M5 LINE L1 -306 5818 5554 3 739 1368 234 30 19 chr3 20256771 20257141 -139342642 + ORR1D1 LTR MaLR 1 374 0 4 739 218 138 33 33 chr3 20257155 20257215 -139342568 + (TA)n Simple_repeat Simple_repeat 2 61 0 4 739 6162 67 1 14 chr3 20257452 20258326 -139341457 + L1_Mus2 LINE L1 5522 6384 -182 4 739 213 226 0 0 chr3 20258326 20258379 -139341404 + A-rich Low_complexity Low_complexity 1 53 0 4 739 285 351 74 25 chr3 20258460 20258641 -139341142 + MIR SINE MIR 3 197 -71 4 739 263 189 0 0 chr3 20258689 20258742 -139341041 - L1_Mur3 LINE L1 -1289 4591 4539 4 739 665 294 63 12 chr3 20258734 20258989 -139340794 + L1M3 LINE L1 5508 5775 -393 4 739 387 0 0 0 chr3 20259381 20259424 -139340359 + (CAAAA)n Simple_repeat Simple_repeat 2 44 0 4 739 5447 5 0 0 chr3 20259629 20260275 -139339508 + L1Md_A LINE L1 5977 6582 0 4 739 229 208 0 0 chr3 20260635 20260688 -139339095 + T-rich Low_complexity Low_complexity 1 53 0 4 739 234 0 0 0 chr3 20260805 20260831 -139338952 + (T)n Simple_repeat Simple_repeat 1 26 0 4 739 645 299 90 20 chr3 20261034 20261235 -139338548 - B3 SINE B2 0 216 2 4 739 207 0 0 0 chr3 20262285 20262308 -139337475 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 4 739 1479 140 97 27 chr3 20262494 20262919 -139336864 + RMER17C LTR ERVK 25 439 -519 4 739 349 339 92 0 chr3 20264522 20264552 -139335231 - ID_B1 SINE B4 -2 222 82 4 739 357 289 20 20 chr3 20264552 20264651 -139335132 - PB1D10 SINE Alu -18 99 1 4 739 198 128 0 0 chr3 20266777 20266816 -139332967 + (T)n Simple_repeat Simple_repeat 1 39 0 4 739 966 126 21 0 chr3 20266817 20266960 -139332823 - B1_Mus1 SINE Alu 0 148 3 4 739 5607 182 45 13 chr3 20266960 20267920 -139331863 + Lx6 LINE L1 5017 6029 -1431 4 739 537 16 0 0 chr3 20267920 20267982 -139331801 + (TG)n Simple_repeat Simple_repeat 2 63 0 4 739 5607 215 80 14 chr3 20267982 20268302 -139331481 + Lx6 LINE L1 6030 6393 -1067 4 739 315 0 0 0 chr3 20268302 20268337 -139331446 + (CA)n Simple_repeat Simple_repeat 1 35 0 4 739 5607 215 80 14 chr3 20268337 20268686 -139331097 + Lx6 LINE L1 6394 6748 -712 4 739 315 0 0 0 chr3 20268686 20268721 -139331062 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 4 739 5607 215 80 14 chr3 20268721 20268958 -139330825 + Lx6 LINE L1 6749 6990 -470 4 739 2443 35 0 0 chr3 20269268 20269555 -139330228 + L1Md_F2 LINE L1 5300 5586 -297 4 739 8286 41 0 2 chr3 20269555 20270552 -139329231 + L1Md_F2 LINE L1 5587 6581 -1 4 739 17554 91 26 9 chr3 20271326 20273134 -139326649 + L1VL4 LINE L1 194 1997 -1562 4 739 1959 180 93 99 chr3 20273134 20273670 -139326113 + RMER16 LTR ERVK 1 533 0 4 739 17554 82 38 3 chr3 20273670 20275109 -139324674 + L1VL4 LINE L1 1998 3520 -39 4 739 1110 210 53 65 chr3 20275607 20275928 -139323855 + Lx4B LINE L1 6722 7038 -20 4 739 219 36 0 0 chr3 20275928 20275956 -139323827 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 4 739 344 179 211 18 chr3 20276062 20276176 -139323607 - MER58B DNA MER1_type -126 215 80 4 739 710 284 36 60 chr3 20276360 20276611 -139323172 + MTE2b LTR MaLR 135 379 0 4 739 604 331 0 0 chr3 20276690 20276841 -139322942 + B3A SINE B2 1 151 -47 4 739 14552 92 25 1 chr3 20276899 20279689 -139320094 + L1Md_F LINE L1 366 3224 -2659 4 739 2528 216 108 68 chr3 20279697 20280553 -139319230 - RLTR13D6 LTR ERVK -12 890 1 4 739 6173 86 8 0 chr3 20280553 20281413 -139318370 + L1_Mm LINE L1 3220 4086 -1797 4 739 6004 80 0 4 chr3 20281411 20282211 -139317572 + L1_Mm LINE L1 4924 5720 -163 4 739 5649 93 24 62 chr3 20282211 20283967 -139315816 - L1Md_F LINE L1 -3935 1948 263 4 739 400 117 0 0 chr3 20283968 20284028 -139315755 - L1Md_F LINE L1 -6291 325 266 4 739 6099 116 19 3 chr3 20284016 20284952 -139314831 - L1_Mm LINE L1 -886 4997 4047 4 739 3833 124 0 2 chr3 20284949 20285516 -139314267 + L1_Mm LINE L1 5213 5778 -105 4 739 7999 62 6 7 chr3 20285513 20286561 -139313222 + L1Md_F2 LINE L1 4540 5586 -297 4 739 7772 63 0 3 chr3 20286562 20287550 -139312233 + L1Md_F2 LINE L1 5588 6572 -10 4 739 259 371 83 35 chr3 20287821 20287966 -139311817 - RSINE1 SINE B4 -6 159 8 4 739 7024 65 5 26 chr3 20288396 20289352 -139310431 + L1Md_F2 LINE L1 5634 6569 -13 4 739 2407 232 52 13 chr3 20289394 20289936 -139309847 - Lx5 LINE L1 -11 7039 6477 4 739 2954 217 62 14 chr3 20290887 20292430 -139307353 - Lx5 LINE L1 -141 6909 5222 4 739 2337 190 30 63 chr3 20292426 20293026 -139306757 + Lx5 LINE L1 4616 5195 -682 4 739 798 270 109 27 chr3 20293011 20293519 -139306264 + Lx9 LINE L1 5452 6028 -1616 4 739 214 235 10 10 chr3 20293670 20293773 -139306010 + (TA)n Simple_repeat Simple_repeat 1 103 0 4 739 1948 307 108 25 chr3 20293787 20294727 -139305056 + Lx9 LINE L1 6358 7375 -269 4 739 867 292 61 30 chr3 20295038 20295366 -139304417 + MTC-int LTR MaLR 525 862 -396 4 739 385 175 82 10 chr3 20295393 20295491 -139304292 + MTC-int LTR MaLR 922 1026 -232 4 739 22 0 0 0 chr3 20295569 20295591 -139304192 + AT_rich Low_complexity Low_complexity 1 22 0 4 739 946 195 40 9 chr3 20296087 20296315 -139303468 + L1_Mur3 LINE L1 1561 1795 -4085 4 739 231 36 0 0 chr3 20296404 20296432 -139303351 + (TAA)n Simple_repeat Simple_repeat 1 28 0 4 739 1087 222 51 49 chr3 20296440 20296790 -139302993 - Lx5 LINE L1 -1457 4423 4073 4 739 263 24 0 0 chr3 20297264 20297306 -139302477 + Lx2 LINE L1 6956 6997 0 4 739 1698 318 31 18 chr3 20297297 20297913 -139301870 + Lx5 LINE L1 6455 7049 -1 4 739 488 352 60 15 chr3 20298020 20298219 -139301564 + ID_B1 SINE B4 6 213 -11 4 739 29 28 0 0 chr3 20298758 20298794 -139300989 + AT_rich Low_complexity Low_complexity 1 36 0 4 739 479 359 35 62 chr3 20299006 20299347 -139300436 - Lx9 LINE L1 -845 6799 6468 4 739 739 247 26 106 chr3 20299390 20299693 -139300090 + Lx9 LINE L1 6805 7083 -561 4 739 477 47 0 0 chr3 20300124 20300188 -139299595 + (TG)n Simple_repeat Simple_repeat 1 64 0 4 739 217 402 0 0 chr3 20300408 20300500 -139299283 - B4A SINE B4 -199 93 2 4 739 272 333 0 0 chr3 20300546 20300633 -139299150 + MTE2b LTR MaLR 1 87 -292 4 739 558 357 28 24 chr3 20300643 20300890 -139298893 + MTE2b LTR MaLR 58 305 -74 4 739 203 207 40 32 chr3 20300898 20301023 -139298760 + (TATAA)n Simple_repeat Simple_repeat 3 128 0 4 739 328 264 33 0 chr3 20301050 20301141 -139298642 + MTE-int LTR MaLR 9 102 -1478 4 739 254 315 0 0 chr3 20302065 20302138 -139297645 + (CATATA)n Simple_repeat Simple_repeat 6 78 0 4 739 467 324 295 6 chr3 20302889 20303207 -139296576 + ORR1D2 LTR MaLR 10 419 0 4 739 201 182 0 22 chr3 20303747 20303792 -139295991 + T-rich Low_complexity Low_complexity 2 45 0 4 739 33 25 0 0 chr3 20303898 20303938 -139295845 + AT_rich Low_complexity Low_complexity 1 40 0 4 739 269 271 27 36 chr3 20303938 20304049 -139295734 - RMER1B Other Other -116 950 841 4 739 4267 108 22 3 chr3 20304042 20304663 -139295120 + Lx3A LINE L1 6247 6879 -102 4 739 213 65 0 0 chr3 20304819 20304850 -139294933 + (GAAA)n Simple_repeat Simple_repeat 2 32 0 4 739 480 306 138 0 chr3 20305452 20305612 -139294171 - B3 SINE B2 -34 182 1 4 739 313 349 8 15 chr3 20306024 20306155 -139293628 - B1F SINE Alu 0 149 20 4 739 237 33 0 0 chr3 20306431 20306461 -139293322 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 4 739 817 206 120 48 chr3 20306533 20306742 -139293041 + URR1A DNA MER1_type 1 224 -2 4 739 2405 216 65 6 chr3 20307027 20307549 -139292234 + Lx4B LINE L1 6501 7053 -5 4 739 243 179 14 29 chr3 20307570 20307639 -139292144 + A-rich Low_complexity Low_complexity 4 71 0 4 739 192 265 149 47 chr3 20310572 20310679 -139289104 + L2 LINE L2 807 924 -2495 4 739 277 236 40 27 chr3 20311110 20311184 -139288599 + Lx9 LINE L1 6863 6937 -707 4 739 513 337 32 25 chr3 20311195 20311633 -139288150 + Lx9 LINE L1 7053 7493 -151 4 739 6127 87 12 2 chr3 20311819 20312653 -139287130 + Lx3_Mus LINE L1 6168 7009 0 4 739 517 120 98 0 chr3 20312844 20312977 -139286806 + L1_Mus3 LINE L1 6493 6638 0 4 739 29 47 0 0 chr3 20314026 20314069 -139285714 + AT_rich Low_complexity Low_complexity 1 43 0 4 92 25443 25 1 0 chr3 20314091 20317779 -139282004 - L1Md_A LINE L1 -2 6580 2891 4 740 2472 63 3 0 chr3 20317780 20318099 -139281684 - L1Md_A LINE L1 -5627 989 670 4 740 958 198 0 5 chr3 20318091 20318284 -139281499 - L1Md_A LINE L1 -6282 334 143 4 740 10770 79 4 3 chr3 20318374 20320521 -139279262 - L1Md_F2 LINE L1 -4 6578 4431 4 740 450 0 0 0 chr3 20321204 20321254 -139278529 + (TA)n Simple_repeat Simple_repeat 2 51 0 4 740 3320 62 2 0 chr3 20322419 20322841 -139276942 + L1Md_F2 LINE L1 5164 5586 -297 4 740 7575 62 14 5 chr3 20322842 20323828 -139275955 + L1Md_F2 LINE L1 5588 6582 0 4 740 2748 169 41 36 chr3 20323950 20324431 -139275352 + Lx4B LINE L1 2974 3476 -2401 4 740 234 0 0 0 chr3 20324431 20324457 -139275326 + (TTAA)n Simple_repeat Simple_repeat 1 26 0 4 740 2748 169 41 36 chr3 20324457 20324582 -139275201 + Lx4B LINE L1 3477 3583 -2294 4 740 4468 187 26 10 chr3 20324581 20325632 -139274151 + Lx4B LINE L1 5450 6536 -522 4 740 3232 72 130 2 chr3 20325642 20326119 -139273664 + L1_Mm LINE L1 4907 5444 -439 4 740 1300 247 20 7 chr3 20326101 20326399 -139273384 + Lx4B LINE L1 6540 6841 -159 4 740 345 280 0 39 chr3 20326798 20326902 -139272881 + PB1D10 SINE Alu 18 117 0 4 740 547 272 26 45 chr3 20327480 20327634 -139272149 - B3 SINE B2 -3 213 63 4 740 3529 147 34 8 chr3 20328770 20329387 -139270396 - Lx2 LINE L1 0 6997 6365 4 740 186 43 0 0 chr3 20329586 20329609 -139270174 + (CA)n Simple_repeat Simple_repeat 2 24 0 4 740 198 0 0 0 chr3 20330708 20330730 -139269053 + (TA)n Simple_repeat Simple_repeat 2 23 0 4 740 189 0 0 0 chr3 20331398 20331419 -139268364 + (TG)n Simple_repeat Simple_repeat 2 22 0 4 740 1335 96 17 0 chr3 20331496 20331674 -139268109 - B2_Mm2 SINE B2 -13 182 2 4 740 7496 159 31 11 chr3 20331685 20333017 -139266766 - Lx2B LINE L1 -3 6997 5638 4 740 216 143 0 0 chr3 20333152 20333194 -139266589 + (CA)n Simple_repeat Simple_repeat 1 42 0 4 740 1307 73 0 0 chr3 20333256 20333421 -139266362 - Lx3_Mus LINE L1 -337 6672 6508 4 740 4384 80 21 22 chr3 20333421 20334215 -139265568 + Lx3_Mus LINE L1 5280 6048 -961 4 740 203 216 0 19 chr3 20334259 20334311 -139265472 + (TA)n Simple_repeat Simple_repeat 1 51 0 4 740 183 80 0 0 chr3 20334341 20334366 -139265417 + (TATG)n Simple_repeat Simple_repeat 4 28 0 4 740 783 252 60 60 chr3 20334392 20334550 -139265233 + Lx7 LINE L1 7364 7508 -188 4 740 753 43 0 0 chr3 20334550 20334643 -139265140 + (CTATT)n Simple_repeat Simple_repeat 4 96 0 4 740 783 252 60 60 chr3 20334643 20334684 -139265099 + Lx7 LINE L1 7509 7562 -134 4 740 1051 92 0 0 chr3 20334684 20334826 -139264957 - B1_Mm SINE Alu -4 143 2 4 740 783 252 60 60 chr3 20334826 20334958 -139264825 + Lx7 LINE L1 7563 7695 -1 4 740 620 264 80 20 chr3 20335953 20336154 -139263629 + MTEb LTR MaLR 156 368 -11 4 740 11953 100 18 2 chr3 20337018 20338217 -139261566 + L1Md_F2 LINE L1 3805 5018 -865 5 740 225 108 0 0 chr3 20338217 20338254 -139261529 + (TAA)n Simple_repeat Simple_repeat 2 38 0 5 740 11953 100 18 2 chr3 20338254 20338671 -139261112 + L1Md_F2 LINE L1 5019 5440 -443 5 740 3939 50 0 0 chr3 20338671 20339154 -139260629 + L1Md_T LINE L1 6099 6581 -1 5 740 11953 100 18 2 chr3 20339154 20339288 -139260495 + L1Md_F2 LINE L1 5441 5582 -301 5 740 7383 75 4 3 chr3 20339289 20340272 -139259511 + L1Md_F2 LINE L1 5587 6570 -12 5 740 6006 72 3 1 chr3 20340270 20341050 -139258733 + L1_Mus1 LINE L1 5783 6563 -4 5 740 21 36 0 0 chr3 20341050 20341078 -139258705 + AT_rich Low_complexity Low_complexity 1 28 0 5 740 812 89 8 0 chr3 20341564 20341687 -139258096 + (GA)n Simple_repeat Simple_repeat 2 125 0 5 740 627 244 23 0 chr3 20342483 20342614 -139257169 + B1_Mur4 SINE Alu 7 140 -10 5 740 25 51 0 0 chr3 20342633 20342672 -139257111 + AT_rich Low_complexity Low_complexity 1 39 0 5 740 478 22 86 21 chr3 20343072 20343165 -139256618 + (CAGAGA)n Simple_repeat Simple_repeat 2 100 0 5 740 684 317 5 42 chr3 20343165 20343377 -139256406 + MTE2a LTR MaLR 171 375 -4 5 740 681 98 10 19 chr3 20344426 20344530 -139255253 + B1_Mm SINE Alu 45 147 0 5 740 2559 188 48 106 chr3 20345015 20346131 -139253652 + L1_Mur1 LINE L1 3 1489 -4397 5 740 315 0 0 0 chr3 20346131 20346166 -139253617 + (A)n Simple_repeat Simple_repeat 1 35 0 5 740 33189 75 4 4 chr3 20346166 20351492 -139248291 + L1Md_F2 LINE L1 307 5585 -298 5 740 7962 49 1 7 chr3 20351493 20352495 -139247288 + L1Md_F2 LINE L1 5587 6582 0 5 740 1960 141 41 28 chr3 20352497 20352891 -139246892 + L1_Mur1 LINE L1 1613 2011 -3875 5 740 6848 146 22 22 chr3 20352884 20353805 -139245978 + L1_Mur1 LINE L1 4287 5209 -677 5 740 2582 76 38 55 chr3 20353805 20354223 -139245560 - RLTR9F LTR ERVK -4 411 1 5 740 6848 146 22 22 chr3 20354223 20354553 -139245230 + L1_Mur1 LINE L1 5210 5539 -347 5 740 1332 228 19 29 chr3 20354552 20354859 -139244924 - Lx2B LINE L1 -354 6646 6343 5 740 532 101 22 0 chr3 20354869 20354958 -139244825 + (GA)n Simple_repeat Simple_repeat 2 92 0 5 740 4049 156 21 5 chr3 20354960 20355813 -139243970 - Lx2B LINE L1 -662 6338 5468 5 740 258 105 0 0 chr3 20356129 20356167 -139243616 + (T)n Simple_repeat Simple_repeat 1 38 0 5 740 331 73 0 35 chr3 20356431 20356488 -139243295 + (GAAAA)n Simple_repeat Simple_repeat 1 55 0 5 740 1012 311 84 40 chr3 20358503 20359287 -139240496 - Lx9 LINE L1 -10 7634 6816 5 740 442 324 39 62 chr3 20361140 20361402 -139238381 - MTEb LTR MaLR -130 249 1 5 740 450 230 104 1 chr3 20362216 20362331 -139237452 - B1_Mur3 SINE Alu -19 131 4 5 740 237 363 33 11 chr3 20362252 20362344 -139237439 - B4A SINE B4 -125 167 74 5 740 324 0 0 0 chr3 20363449 20363485 -139236298 + (TA)n Simple_repeat Simple_repeat 1 36 0 5 740 21 36 0 0 chr3 20365471 20365499 -139234284 + AT_rich Low_complexity Low_complexity 1 28 0 5 740 285 98 0 0 chr3 20365778 20365819 -139233964 + (TTCA)n Simple_repeat Simple_repeat 4 44 0 5 740 571 226 109 6 chr3 20365820 20365976 -139233807 - Lx4B LINE L1 -18 7040 6869 5 740 767 66 9 0 chr3 20366483 20366589 -139233194 + (TTTC)n Simple_repeat Simple_repeat 1 107 0 5 740 207 88 0 0 chr3 20366700 20366734 -139233049 + (T)n Simple_repeat Simple_repeat 1 34 0 5 740 1353 268 25 0 chr3 20367040 20367365 -139232418 - Lx5 LINE L1 -3 7047 6715 5 740 1315 232 12 70 chr3 20367364 20367776 -139232007 + RMER1B Other Other 675 1062 -4 5 740 196 320 37 67 chr3 20367890 20368024 -139231759 + L3 LINE CR1 2155 2284 -2205 5 740 941 296 23 44 chr3 20368722 20369110 -139230673 - Lx9 LINE L1 -460 7184 6805 5 740 394 314 0 8 chr3 20369326 20369445 -139230338 + Lx9 LINE L1 6682 6799 -845 5 740 1574 210 34 18 chr3 20369909 20370086 -139229697 + L1_Mur3 LINE L1 4070 4244 -1636 5 740 2255 69 7 0 chr3 20370086 20370377 -139229406 - L1_Mus1 LINE L1 0 6567 6275 5 740 1574 210 34 18 chr3 20370377 20370640 -139229143 + L1_Mur3 LINE L1 4245 4517 -1363 5 740 416 245 10 0 chr3 20370701 20370799 -139228984 - Lx9 LINE L1 -444 7200 7102 5 740 336 243 116 14 chr3 20370793 20370931 -139228852 + Lx9 LINE L1 7197 7348 -296 5 740 1273 281 85 10 chr3 20370940 20371551 -139228232 - L1_Mur3 LINE L1 -3663 2217 1561 5 740 442 299 0 22 chr3 20372252 20372389 -139227394 - IAP-d-int LTR ERVK -22 6520 6387 5 740 324 360 34 22 chr3 20372565 20372886 -139226897 - RLTR19-int LTR ERVK -339 5067 4743 5 740 2554 158 19 16 chr3 20373266 20373696 -139226087 - RLTR19-int LTR ERVK -1728 4409 3979 5 740 543 31 0 0 chr3 20373867 20373932 -139225851 + (TA)n Simple_repeat Simple_repeat 1 65 0 5 740 1313 120 139 7 chr3 20374380 20374818 -139224965 - RLTR19-int LTR ERVK -2157 3980 3485 5 740 1485 34 0 0 chr3 20375137 20375316 -139224467 + (TCTCCC)n Simple_repeat Simple_repeat 1 179 0 5 740 201 194 0 0 chr3 20375316 20375347 -139224436 + C-rich Low_complexity Low_complexity 8 38 0 5 740 290 244 89 59 chr3 20375423 20375558 -139224225 - IAP-d-int LTR ERVK -17 6525 6387 5 740 1414 188 63 9 chr3 20376091 20376439 -139223344 - L1_Mur2 LINE L1 -883 4994 4628 5 740 511 178 22 37 chr3 20376442 20376540 -139223243 + L1_Mur2 LINE L1 5221 5316 -561 5 740 2913 80 10 0 chr3 20376540 20376929 -139222854 - L1_Mus1 LINE L1 -1 6566 6174 5 740 511 178 22 37 chr3 20376929 20376964 -139222819 + L1_Mur2 LINE L1 5317 5352 -525 5 740 1076 298 80 45 chr3 20378943 20379748 -139220035 - Lx9 LINE L1 -2 7642 6810 5 740 469 274 82 84 chr3 20381512 20381770 -139218013 - MTEb LTR MaLR -127 252 1 5 740 310 148 363 33 chr3 20382588 20382679 -139217104 - B1_Mur3 SINE Alu -18 131 11 5 740 2199 111 83 3 chr3 20382902 20383303 -139216480 - Lx LINE L1 -701 5953 5526 5 740 3463 136 41 20 chr3 20383325 20383912 -139215871 + Lx LINE L1 5965 6563 -91 5 740 14973 9 0 0 chr3 20383906 20385614 -139214169 - L1Md_A LINE L1 -508 5375 3668 5 740 2008 22 0 0 chr3 20385612 20385840 -139213943 + L1Md_A LINE L1 5359 5586 -297 5 740 8786 14 0 0 chr3 20385840 20386835 -139212948 + L1Md_A LINE L1 5587 6581 -1 5 740 375 102 48 58 chr3 20386840 20386944 -139212839 + L1_Mus4 LINE L1 6534 6636 0 5 740 28 61 0 0 chr3 20387544 20387593 -139212190 + AT_rich Low_complexity Low_complexity 1 49 0 5 740 321 292 31 20 chr3 20389952 20390050 -139209733 + B3 SINE B2 60 158 -58 5 740 797 276 37 45 chr3 20390203 20390446 -139209337 - Lx5 LINE L1 -95 6955 6715 5 740 797 267 71 42 chr3 20390443 20390868 -139208915 + RMER1B Other Other 615 1338 -4 5 740 983 313 73 22 chr3 20391447 20391803 -139207980 - MTD LTR MaLR 0 419 46 5 740 390 243 8 59 chr3 20391817 20391935 -139207848 - ORR1D2 LTR MaLR -5 365 254 5 740 616 253 18 18 chr3 20391935 20392104 -139207679 + L1_Rod LINE L1 4982 5150 -697 5 740 1260 153 86 8 chr3 20392106 20392363 -139207420 - L1_Mur1 LINE L1 -396 5490 5214 5 740 388 211 106 26 chr3 20392364 20392515 -139207268 - L1_Rod LINE L1 -533 5314 5152 5 740 198 0 0 0 chr3 20392743 20392765 -139207018 + (T)n Simple_repeat Simple_repeat 1 22 0 5 740 1493 257 37 106 chr3 20393009 20393583 -139206200 + RLTR20A LTR ERVK 1 534 -7 5 740 226 373 0 0 chr3 20393797 20393872 -139205911 + ID4 SINE ID 9 83 0 5 740 704 313 62 22 chr3 20395116 20395485 -139204298 - MuRRS4-int LTR ERV1 -167 4896 4569 5 740 6437 194 35 10 chr3 20398084 20399866 -139199917 + Lx5 LINE L1 4580 6423 -627 5 740 297 0 0 0 chr3 20399866 20399899 -139199884 + (GA)n Simple_repeat Simple_repeat 1 33 0 5 740 4002 221 53 16 chr3 20399899 20400025 -139199758 + Lx5 LINE L1 6424 6557 -493 5 740 2678 134 0 12 chr3 20400165 20400572 -139199211 - MTB_Mm LTR MaLR 0 407 6 5 740 473 290 0 0 chr3 20401378 20401502 -139198281 - RMER15-int LTR ERVL -3859 1140 1017 5 740 768 152 0 0 chr3 20403250 20403382 -139196401 + CT-rich Low_complexity Low_complexity 4 135 0 5 740 1105 122 0 7 chr3 20403382 20403531 -139196252 - B1_Mus1 SINE Alu 0 148 1 5 740 183 254 82 27 chr3 20404356 20404429 -139195354 - L2 LINE L2 -511 2908 2832 5 740 307 241 0 0 chr3 20404887 20404945 -139194838 + L2a LINE L2 3363 3420 -6 5 740 204 291 0 0 chr3 20405444 20405499 -139194284 + (TG)n Simple_repeat Simple_repeat 2 56 0 5 740 182 119 48 0 chr3 20405508 20405550 -139194233 + T-rich Low_complexity Low_complexity 3 46 0 5 740 7282 102 23 1 chr3 20405569 20406902 -139192881 - L1_Mus4 LINE L1 -1 6635 5279 5 740 233 278 146 0 chr3 20406906 20407008 -139192775 - L2a LINE L2 -21 3405 3241 5 740 815 98 8 0 chr3 20407820 20407943 -139191840 + (TTCC)n Simple_repeat Simple_repeat 4 127 0 5 740 198 0 0 0 chr3 20408073 20408095 -139191688 + (TAAAA)n Simple_repeat Simple_repeat 5 26 0 5 740 183 250 113 32 chr3 20408386 20408448 -139191335 - L2c LINE L2 -7 3380 3314 5 740 521 88 12 0 chr3 20408573 20408653 -139191130 + (GA)n Simple_repeat Simple_repeat 2 82 0 5 740 315 295 93 21 chr3 20408710 20408807 -139190976 + PB1D10 SINE Alu 7 110 -7 5 740 21 0 0 0 chr3 20408881 20408902 -139190881 + AT_rich Low_complexity Low_complexity 1 21 0 5 740 214 372 31 41 chr3 20408910 20409008 -139190775 - MIRm SINE MIR -89 187 91 5 740 719 136 102 0 chr3 20409453 20409571 -139190212 + B1_Mus2 SINE Alu 13 142 -5 5 740 1383 41 0 0 chr3 20409864 20410034 -139189749 + (TCTCCC)n Simple_repeat Simple_repeat 5 174 0 5 740 210 37 0 0 chr3 20412528 20412555 -139187228 + (CA)n Simple_repeat Simple_repeat 2 28 0 5 740 327 25 0 0 chr3 20412555 20412594 -139187189 + (GA)n Simple_repeat Simple_repeat 2 41 0 5 740 275 194 113 41 chr3 20412598 20412695 -139187088 - MIRb SINE MIR -84 184 81 5 740 464 248 27 18 chr3 20413596 20413707 -139186076 - PB1 SINE Alu -3 124 13 5 740 932 31 15 30 chr3 20413733 20413867 -139185916 - L1Md_F3 LINE L1 -1 6583 6452 5 740 455 292 192 43 chr3 20413994 20414316 -139185467 - HAL1 LINE L1 -622 1885 1516 5 740 423 0 0 0 chr3 20414349 20414396 -139185387 + (TG)n Simple_repeat Simple_repeat 2 48 0 5 740 271 254 0 0 chr3 20414396 20414451 -139185332 - RSINE1 SINE B4 -41 124 70 5 740 443 250 30 0 chr3 20414485 20414585 -139185198 - B1_Mur4 SINE Alu -7 143 41 5 740 264 254 16 0 chr3 20414546 20414609 -139185174 - 4.5SRNA scRNA scRNA -18 76 13 5 740 255 289 65 29 chr3 20414916 20415055 -139184728 - HAL1 LINE L1 -1003 1504 1361 5 740 1267 57 6 11 chr3 20415310 20415488 -139184295 + (TTTCC)n Simple_repeat Simple_repeat 3 179 0 5 740 291 225 0 0 chr3 20415591 20415662 -139184121 + CT-rich Low_complexity Low_complexity 4 74 0 5 740 399 303 17 6 chr3 20415765 20415941 -139183842 + (TG)n Simple_repeat Simple_repeat 1 178 0 6 740 320 27 0 0 chr3 20416013 20416050 -139183733 - HAL1-3A_ME LINE L1 -847 2011 1975 6 740 559 219 6 6 chr3 20416164 20416343 -139183440 + (TG)n Simple_repeat Simple_repeat 2 180 0 6 740 778 135 7 7 chr3 20417004 20417146 -139182637 + (TTTC)n Simple_repeat Simple_repeat 3 144 0 6 740 186 43 0 0 chr3 20417154 20417177 -139182606 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 6 740 665 166 67 67 chr3 20417182 20417331 -139182452 - B1_Mur2 SINE Alu 0 149 1 6 740 244 185 0 36 chr3 20417341 20417397 -139182386 + CT-rich Low_complexity Low_complexity 2 55 0 6 740 762 225 0 0 chr3 20417397 20417539 -139182244 - B1_Mus1 SINE Alu -5 143 2 6 740 276 91 0 0 chr3 20418253 20418297 -139181486 + (CAGT)n Simple_repeat Simple_repeat 2 45 0 6 740 2015 130 35 7 chr3 20418550 20418860 -139180923 - ORR1A2 LTR MaLR -8 319 1 6 740 282 255 67 67 chr3 20418871 20418976 -139180807 + MIR SINE MIR 31 135 -127 6 740 220 127 36 0 chr3 20419007 20419062 -139180721 + (TA)n Simple_repeat Simple_repeat 2 58 0 6 740 2311 203 96 16 chr3 20419096 20419499 -139180284 + RLTR20A LTR ERVK 2 439 -102 6 740 402 39 0 0 chr3 20419499 20419551 -139180232 + (TG)n Simple_repeat Simple_repeat 2 53 0 6 740 2311 203 96 16 chr3 20419551 20419647 -139180136 + RLTR20A LTR ERVK 440 540 -1 6 740 591 286 295 0 chr3 20420116 20420333 -139179450 - B4A SINE B4 -10 282 2 6 740 730 289 124 41 chr3 20420649 20420916 -139178867 - B4 SINE B4 0 292 4 6 740 2384 146 46 17 chr3 20420929 20421313 -139178470 + RMER2 LTR ERV1 133 535 -32 6 740 339 65 0 0 chr3 20421313 20421359 -139178424 + (TG)n Simple_repeat Simple_repeat 1 46 0 6 740 2384 146 46 17 chr3 20421359 20421384 -139178399 + RMER2 LTR ERV1 536 553 -14 6 740 258 328 84 37 chr3 20421628 20421818 -139177965 - MLT1K LTR MaLR -11 584 386 6 740 737 222 82 0 chr3 20422093 20422228 -139177555 + B1_Mur4 SINE Alu 2 147 -3 6 740 1732 21 5 10 chr3 20422230 20422423 -139177360 + B2_Mm1t SINE B2 2 193 0 6 740 725 289 88 25 chr3 20422837 20423075 -139176708 - ORR1D2 LTR MaLR 0 370 118 6 740 450 0 0 0 chr3 20423399 20423449 -139176334 + (GGAA)n Simple_repeat Simple_repeat 3 52 0 6 740 243 254 96 27 chr3 20423523 20423596 -139176187 - B1F SINE Alu -67 82 5 6 740 1169 59 0 0 chr3 20423738 20423874 -139175909 + B1_Mus1 SINE Alu 1 136 -12 6 740 735 44 0 0 chr3 20423874 20423965 -139175818 + (GA)n Simple_repeat Simple_repeat 2 92 0 6 740 948 140 0 7 chr3 20424069 20424213 -139175570 + B1_Mur4 SINE Alu 7 149 -1 6 740 23 33 0 0 chr3 20424273 20424303 -139175480 + AT_rich Low_complexity Low_complexity 1 30 0 6 740 2514 69 156 8 chr3 20424340 20424719 -139175064 - RLTR44C LTR ERVK -67 435 1 6 740 2548 58 24 18 chr3 20425257 20425588 -139174195 - L1_Mus1 LINE L1 -1 6566 6234 6 740 1381 50 0 0 chr3 20425588 20425749 -139174034 + L1_Mus1 LINE L1 6106 6266 -301 6 740 673 306 127 29 chr3 20426112 20426489 -139173294 - MLT1D LTR MaLR -62 443 30 6 740 1381 211 47 39 chr3 20426576 20426960 -139172823 - RMER16 LTR ERVK 0 533 147 6 740 6855 120 46 24 chr3 20426999 20427734 -139172049 - RMER16-int LTR ERVK -9 5397 4682 6 740 6877 62 10 2 chr3 20427734 20428536 -139171247 - RLTR13C2 LTR ERVK 0 808 1 6 740 6855 120 46 24 chr3 20428536 20428867 -139170916 - RMER16-int LTR ERVK -725 4681 4308 6 740 14481 141 2 44 chr3 20428867 20430749 -139169034 + L1_Mm LINE L1 3099 4922 -961 6 740 3782 20 0 0 chr3 20430749 20431145 -139168638 + MTA_Mm LTR MaLR 1 396 0 6 740 14481 141 2 44 chr3 20431145 20431838 -139167945 + L1_Mm LINE L1 4923 5566 -317 6 740 286 237 125 69 chr3 20432548 20432721 -139167062 + IAP-d-int LTR ERVK 6386 6525 -17 6 740 4244 138 112 74 chr3 20433018 20433431 -139166352 + RLTR19-int LTR ERVK 3485 3966 -2169 6 740 353 138 17 0 chr3 20433431 20433489 -139166294 - L1_Mm LINE L1 -998 4885 4827 6 740 5168 36 119 2 chr3 20433491 20434106 -139165677 + L1Md_F2 LINE L1 5893 6579 -3 6 740 4244 138 112 74 chr3 20434106 20434494 -139165289 + RLTR19-int LTR ERVK 3969 4378 -1759 6 740 309 247 0 63 chr3 20434501 20434596 -139165187 - MYSERV16_I-int LTR ERVK -378 1948 1860 6 740 2574 94 103 6 chr3 20434603 20435098 -139164685 + RMER16-int LTR ERVK 889 1431 -3975 6 740 868 184 154 51 chr3 20435144 20435380 -139164403 + RMER16-int LTR ERVK 1313 1537 -3869 6 740 6249 230 58 65 chr3 20435468 20436052 -139163731 + RMER16-int LTR ERVK 2188 2615 -4791 6 740 1267 130 0 40 chr3 20436052 20436276 -139163507 - L1_Mus3 LINE L1 -5 6633 6419 6 740 6811 153 68 27 chr3 20436276 20437379 -139162404 + RMER16-int LTR ERVK 1570 3739 -3667 6 740 1256 222 233 21 chr3 20437379 20437816 -139161967 - RMER16 LTR ERVK -1 532 3 6 740 6811 151 68 25 chr3 20437816 20438020 -139161763 + RMER16-int LTR ERVK 2675 2870 -2536 6 740 693 126 0 47 chr3 20438027 20438177 -139161606 + (TCTCTG)n Simple_repeat Simple_repeat 2 144 0 6 740 3355 137 86 23 chr3 20438179 20438828 -139160955 + RMER16-int LTR ERVK 2863 3552 -1854 6 740 744 236 57 33 chr3 20438831 20439058 -139160725 - LTRIS4 LTR ERV1 0 519 298 6 740 624 332 42 13 chr3 20439205 20439590 -139160193 + SRV_MM-int LTR ERVK 4979 5374 -793 6 740 22 0 0 0 chr3 20440521 20440543 -139159240 + AT_rich Low_complexity Low_complexity 1 22 0 6 740 280 352 8 23 chr3 20440884 20441015 -139158768 + RLTR42-int LTR ERVK 4579 4707 -815 6 740 370 261 16 16 chr3 20440901 20441022 -139158761 + RLTR6-int LTR ERV1 7341 7461 -317 6 740 1875 45 0 9 chr3 20441077 20441472 -139158311 - L1Md_F3 LINE L1 0 6584 6361 6 740 261 319 9 9 chr3 20441532 20441646 -139158137 + RLTR42-int LTR ERVK 5775 5888 -279 6 740 310 237 40 115 chr3 20442239 20442387 -139157396 + RLTR43A LTR ERVK 228 364 0 6 740 200 267 13 26 chr3 20442448 20442525 -139157258 + (TG)n Simple_repeat Simple_repeat 1 76 0 6 740 186 143 0 0 chr3 20442536 20442571 -139157212 + (TG)n Simple_repeat Simple_repeat 1 35 0 6 740 907 165 119 28 chr3 20442872 20443221 -139156562 - RLTR9E LTR ERVK -4 405 1 6 740 583 348 84 14 chr3 20443269 20443555 -139156228 + MTE2b LTR MaLR 67 372 -7 6 740 239 320 0 0 chr3 20444610 20444688 -139155095 + (TA)n Simple_repeat Simple_repeat 1 78 0 6 740 1019 282 35 75 chr3 20445321 20445693 -139154090 + ORR1D2 LTR MaLR 1 357 -13 6 740 1085 296 82 23 chr3 20445711 20446064 -139153719 + MTD LTR MaLR 46 419 0 6 740 1119 225 9 137 chr3 20446636 20447080 -139152703 - RMER1B Other Other -5 1061 675 6 92 1235 264 51 13 chr3 20447084 20447398 -139152385 + Lx5 LINE L1 6720 7045 -5 6 741 21 0 0 0 chr3 20448418 20448439 -139151344 + AT_rich Low_complexity Low_complexity 1 21 0 6 741 332 292 33 22 chr3 20448446 20448537 -139151246 - B3 SINE B2 -57 159 68 6 741 989 67 37 0 chr3 20448542 20448677 -139151106 - ORR1A2 LTR MaLR 0 327 188 6 741 4308 128 30 7 chr3 20449675 20450367 -139149416 - Lx2 LINE L1 0 6997 6290 6 741 461 286 12 6 chr3 20450397 20450562 -139149221 - L1VL4 LINE L1 -5943 359 194 6 741 225 94 0 0 chr3 20450564 20450596 -139149187 + (CATATA)n Simple_repeat Simple_repeat 2 33 0 6 741 2218 174 35 9 chr3 20451219 20451649 -139148134 - BGLII_B LTR ERVK 0 441 1 6 741 11156 60 7 0 chr3 20451665 20453311 -139146472 - L1Md_F2 LINE L1 -567 6015 4355 6 741 3751 65 32 40 chr3 20453311 20453842 -139145941 + L1Md_F2 LINE L1 6054 6580 -2 6 741 240 35 0 0 chr3 20454246 20454275 -139145508 + (CA)n Simple_repeat Simple_repeat 2 30 0 6 741 258 32 0 0 chr3 20454277 20454308 -139145475 + (TG)n Simple_repeat Simple_repeat 2 32 0 6 741 27 73 0 0 chr3 20455589 20455644 -139144139 + AT_rich Low_complexity Low_complexity 1 55 0 6 741 1947 131 192 5 chr3 20456289 20456689 -139143094 + IAPLTR2_Mm LTR ERVK 1 475 0 6 741 297 0 0 0 chr3 20457514 20457547 -139142236 + (CAAAAA)n Simple_repeat Simple_repeat 3 35 0 6 741 377 252 127 16 chr3 20457709 20458024 -139141759 - L1_Mur3 LINE L1 -2400 3480 3131 6 741 1599 214 100 18 chr3 20458218 20458598 -139141185 + MTC LTR MaLR 2 412 -9 6 741 402 296 111 17 chr3 20458606 20458963 -139140820 - L1_Mur3 LINE L1 -2978 2899 2502 6 741 1312 271 102 5 chr3 20458964 20459346 -139140437 - MTD LTR MaLR 0 419 1 6 741 280 273 0 0 chr3 20459348 20459436 -139140347 - L1_Mur3 LINE L1 -3365 2515 2428 6 741 440 145 24 0 chr3 20459449 20459532 -139140251 + (TATATG)n Simple_repeat Simple_repeat 2 86 0 6 741 625 292 79 13 chr3 20459536 20459851 -139139932 - L1_Mur3 LINE L1 -3398 2449 2119 6 741 3027 170 115 33 chr3 20460057 20460716 -139139067 - RMER6D LTR ERVK -6 714 2 6 741 268 288 23 60 chr3 20460894 20461027 -139138756 - L1_Mur3 LINE L1 -4225 1655 1528 6 741 279 0 0 0 chr3 20461027 20461058 -139138725 + (T)n Simple_repeat Simple_repeat 1 31 0 6 741 1208 54 0 0 chr3 20461058 20461205 -139138578 - B1_Mm SINE Alu 0 147 1 6 741 288 0 0 0 chr3 20461536 20461568 -139138215 + (TTA)n Simple_repeat Simple_repeat 2 33 0 6 741 307 205 0 37 chr3 20462090 20462171 -139137612 + (TGG)n Simple_repeat Simple_repeat 1 78 0 6 741 308 208 17 0 chr3 20463692 20463758 -139136025 + PB1D10 SINE Alu 1 67 -82 6 741 353 319 53 5 chr3 20463772 20463980 -139135803 + L1MA6 LINE L1 5946 6163 -137 6 741 189 0 0 0 chr3 20464144 20464165 -139135618 + (TG)n Simple_repeat Simple_repeat 1 21 0 6 741 754 20 20 0 chr3 20464165 20464264 -139135519 + (GA)n Simple_repeat Simple_repeat 1 102 0 6 741 1050 192 4 54 chr3 20464883 20465125 -139134658 - Lx5 LINE L1 -696 6354 6125 6 741 226 270 26 51 chr3 20465137 20465215 -139134568 - Lx7 LINE L1 -994 6702 6627 6 741 479 323 81 8 chr3 20465348 20465692 -139134091 - Lx7 LINE L1 -1258 6438 6056 6 741 1360 202 32 3 chr3 20465876 20466184 -139133599 + Lx4B LINE L1 6737 7053 -5 6 741 643 271 31 41 chr3 20466187 20466480 -139133303 - Lx7 LINE L1 -1778 5918 5629 6 741 1702 273 90 32 chr3 20466526 20467348 -139132435 - Lx7 LINE L1 -507 5373 4504 6 741 751 262 3 86 chr3 20467348 20467562 -139132221 - MTD LTR MaLR -231 188 9 6 741 333 0 0 0 chr3 20467604 20467641 -139132142 + (CAA)n Simple_repeat Simple_repeat 2 38 0 6 741 8248 28 4 5 chr3 20467714 20468694 -139131089 + L1Md_F3 LINE L1 5592 6570 -14 6 741 8162 144 24 3 chr3 20468732 20470363 -139129420 - Lx2A1 LINE L1 0 7008 5345 6 741 2719 184 91 14 chr3 20471144 20471782 -139128001 - RMER6C LTR ERVK 0 690 4 6 741 721 184 6 19 chr3 20472031 20472192 -139127591 + L1_Mur2 LINE L1 4011 4169 -1708 6 741 2050 135 0 10 chr3 20472192 20472506 -139127277 - RLTR10E LTR ERVK 0 311 1 6 741 3660 125 17 1 chr3 20472506 20473179 -139126604 - IAPEY3-int LTR ERVK 0 7680 6965 6 741 1378 116 112 0 chr3 20473179 20473403 -139126380 - IAP-d-int LTR ERVK -1287 5255 5007 6 741 334 175 0 0 chr3 20473403 20473460 -139126323 - IAP-d-int LTR ERVK -6039 503 447 6 741 390 312 19 19 chr3 20473479 20473728 -139126055 - IAPEY3-int LTR ERVK -5481 1061 889 6 741 283 119 0 0 chr3 20473898 20473940 -139125843 - IAPEY3-int LTR ERVK -996 991 950 6 741 1395 176 129 18 chr3 20473935 20474372 -139125411 - IAPEY3-int LTR ERVK -5475 662 192 6 741 1312 122 60 8 chr3 20474352 20474601 -139125182 - MMERVK10C-int LTR ERVK -6712 869 608 6 741 1456 135 0 5 chr3 20474601 20474817 -139124966 - RLTR10E LTR ERVK -96 215 1 6 741 3085 152 11 5 chr3 20474817 20475387 -139124396 + L1_Mur2 LINE L1 4164 4736 -1141 6 741 1294 150 0 0 chr3 20475391 20475598 -139124185 + Lx2 LINE L1 6439 6645 -352 7 741 1151 174 23 0 chr3 20475596 20475814 -139123969 + Lx2 LINE L1 6775 6997 0 7 741 296 256 113 28 chr3 20475823 20475964 -139123819 + L1MC4a LINE L1 7683 7835 -47 7 741 216 0 0 0 chr3 20476002 20476026 -139123757 + (CAAAA)n Simple_repeat Simple_repeat 1 24 0 7 741 7824 172 28 18 chr3 20476026 20477394 -139122389 + Lx2A1 LINE L1 4737 6129 -879 7 741 546 57 0 0 chr3 20477394 20477464 -139122319 + (TA)n Simple_repeat Simple_repeat 2 71 0 7 741 7824 143 22 28 chr3 20477464 20478346 -139121437 + Lx2A1 LINE L1 6130 7002 -6 7 741 15977 195 50 52 chr3 20478368 20480165 -139119618 + Lx6 LINE L1 1474 3278 -2602 7 741 1105 119 40 6 chr3 20480165 20480342 -139119441 + B2_Mm2 SINE B2 2 184 -11 7 741 15977 195 50 52 chr3 20480342 20481720 -139118063 + Lx6 LINE L1 3279 4636 -1244 7 741 392 0 21 0 chr3 20481720 20481768 -139118015 + (CA)n Simple_repeat Simple_repeat 2 50 0 7 741 15977 214 52 44 chr3 20481768 20483486 -139116297 + Lx6 LINE L1 4637 6392 -1068 7 741 557 28 14 0 chr3 20483495 20483566 -139116217 + (TC)n Simple_repeat Simple_repeat 2 73 0 7 741 351 0 0 0 chr3 20483581 20483620 -139116163 + (GA)n Simple_repeat Simple_repeat 2 40 0 7 741 1048 241 106 12 chr3 20483625 20483980 -139115803 + Lx6 LINE L1 6889 7541 -155 7 741 1001 247 81 0 chr3 20483977 20484297 -139115486 - Lx9 LINE L1 -2 7642 7297 7 741 255 31 0 0 chr3 20484315 20484347 -139115436 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 7 741 2807 55 0 14 chr3 20484365 20484716 -139115067 + ORR1A1 LTR MaLR 1 346 0 7 741 1814 58 58 4 chr3 20484716 20484974 -139114809 + ORR1A1-int LTR MaLR 2 273 -1519 7 741 7675 39 6 0 chr3 20484984 20486201 -139113582 - L1Md_F2 LINE L1 -13 6569 5343 7 741 1396 87 41 6 chr3 20486201 20486544 -139113239 + ORR1A1 LTR MaLR 184 435 -1357 7 741 584 282 141 14 chr3 20486550 20486913 -139112870 - L1M4 LINE L1 -2262 3884 3476 7 741 435 259 0 0 chr3 20486935 20487051 -139112732 + Lx6 LINE L1 7345 7460 0 7 741 1393 184 141 12 chr3 20487166 20487408 -139112375 - ORR1B2 LTR MaLR 0 367 104 7 741 2015 183 60 18 chr3 20487408 20487843 -139111940 + RLTR11B LTR ERVK 1 453 0 7 741 1393 184 141 12 chr3 20487843 20487920 -139111863 - ORR1B2 LTR MaLR -264 103 7 7 741 1281 73 39 11 chr3 20487990 20488170 -139111613 - B2_Mm2 SINE B2 -9 186 2 7 741 195 129 0 0 chr3 20489949 20489980 -139109803 + (TG)n Simple_repeat Simple_repeat 2 32 0 7 741 400 337 95 30 chr3 20490016 20490230 -139109553 - B3A SINE B2 -4 212 2 7 741 529 333 6 48 chr3 20490230 20490375 -139109408 - B4A SINE B4 -71 221 84 7 741 379 63 0 31 chr3 20490376 20490441 -139109342 + (TA)n Simple_repeat Simple_repeat 1 63 0 7 741 268 343 20 29 chr3 20490449 20490551 -139109232 - B4A SINE B4 -191 101 1 7 741 295 288 89 22 chr3 20491868 20492003 -139107780 + MIRb SINE MIR 24 167 -101 7 741 1987 170 84 43 chr3 20493163 20493605 -139106178 + RLTR11A LTR ERVK 1 460 -68 7 741 13509 40 8 2 chr3 20493627 20496025 -139103758 - L1Md_F2 LINE L1 0 6582 4190 7 741 427 359 81 9 chr3 20496533 20496744 -139103039 - MER47B DNA MER2_type -180 238 13 7 741 596 259 11 45 chr3 20497077 20497255 -139102528 - RMER15 LTR ERVL -16 559 388 7 741 1468 261 50 30 chr3 20497555 20497954 -139101829 - MTD LTR MaLR -7 412 6 7 741 467 304 132 64 chr3 20498172 20498343 -139101440 - RMER20B LTR ERVK -94 533 342 7 741 3268 53 2 0 chr3 20498343 20498738 -139101045 + MTA_Mm LTR MaLR 1 396 0 7 741 467 313 107 68 chr3 20498738 20498891 -139100892 - RMER20B LTR ERVK -286 341 168 7 741 333 172 0 0 chr3 20499063 20499121 -139100662 - L1_Mur2 LINE L1 -703 5174 5117 7 741 4820 66 6 1 chr3 20499121 20500000 -139099783 + L1_Mus1 LINE L1 5168 6051 -516 7 741 4234 54 0 25 chr3 20500000 20500529 -139099254 + L1_Mus1 LINE L1 6052 6567 0 1 741 229 140 35 0 chr3 20500529 20500586 -139099197 + (TAGA)n Simple_repeat Simple_repeat 3 61 0 2 741 318 234 0 59 chr3 20500958 20501026 -139098757 + Lx7 LINE L1 6568 6631 -1065 3 741 381 129 50 15 chr3 20501160 20501239 -139098544 + ORR1A2 LTR MaLR 1 89 -305 4 741 207 0 0 0 chr3 20501874 20501897 -139097886 + (TTTG)n Simple_repeat Simple_repeat 1 23 0 5 741 278 26 0 25 chr3 20502086 20502126 -139097657 + (TA)n Simple_repeat Simple_repeat 1 39 0 6 741 21 0 0 0 chr3 20502990 20503011 -139096772 + AT_rich Low_complexity Low_complexity 1 21 0 7 741 264 59 0 0 chr3 20503620 20503654 -139096129 + (T)n Simple_repeat Simple_repeat 1 34 0 8 741 266 326 11 0 chr3 20503702 20503797 -139095986 - ID_B1 SINE B4 0 224 129 9 741 1334 212 68 11 chr3 20503855 20504136 -139095647 + ORR1B2 LTR MaLR 71 367 0 1 741 227 279 11 92 chr3 20504162 20504249 -139095534 - MTEa LTR MaLR -106 253 174 1 741 424 191 30 69 chr3 20504262 20504363 -139095420 - MTEa LTR MaLR -267 112 16 1 741 743 319 73 11 chr3 20505475 20505735 -139094048 + B4 SINE B4 9 284 -8 1 741 267 280 25 147 chr3 20505874 20506071 -139093712 - MTEb LTR MaLR -9 370 198 1 741 2082 213 22 42 chr3 20506770 20507265 -139092518 - RMER13B LTR ERVK -147 761 277 1 741 989 218 50 31 chr3 20507269 20507682 -139092101 - RMER17B LTR ERVK -712 246 1 1 741 810 255 81 35 chr3 20508355 20508615 -139091168 - B4A SINE B4 -18 274 3 1 741 291 270 16 0 chr3 20508680 20508743 -139091040 + ID SINE ID 7 70 -154 1 741 265 298 20 41 chr3 20508743 20508778 -139091005 + BC1_Mm scRNA scRNA 7 102 -50 1 741 2628 203 90 110 chr3 20508893 20509804 -139089979 + RLTR13D6 LTR ERVK 10 902 0 1 741 228 192 192 0 chr3 20510838 20510890 -139088893 + B4 SINE B4 1 62 -230 2 741 282 116 0 0 chr3 20510890 20510933 -139088850 + (TTTC)n Simple_repeat Simple_repeat 4 46 0 2 741 1707 70 0 5 chr3 20510940 20511156 -139088627 - L1_Mus1 LINE L1 0 6567 6353 2 741 7481 166 42 15 chr3 20511670 20513327 -139086456 - Lx2 LINE L1 0 6997 5304 2 741 5417 101 23 67 chr3 20513327 20514167 -139085616 + RLTR13B4 LTR ERVK 1 803 0 2 741 5551 187 18 5 chr3 20514167 20514629 -139085154 - Lx2 LINE L1 -580 5303 4823 2 741 707 325 109 4 chr3 20514732 20515007 -139084776 - MLT2B2 LTR ERVL -128 387 84 2 741 628 229 27 27 chr3 20515010 20515158 -139084625 + RLTR22_Mur LTR ERVK 4 151 -1697 2 741 405 0 0 0 chr3 20515158 20515203 -139084580 + (TCTA)n Simple_repeat Simple_repeat 3 47 0 2 741 5533 82 55 14 chr3 20515224 20516030 -139083753 - MusHAL1 LINE L1 -71 2641 1803 2 741 567 211 95 0 chr3 20516030 20516177 -139083606 + RLTR22_Mur LTR ERVK 263 423 -1425 2 741 41931 7 0 1 chr3 20516180 20522967 -139076816 - L1Md_A LINE L1 0 6582 1 2 741 577 153 56 8 chr3 20522967 20523092 -139076691 + RLTR22_Mus LTR ERVK 412 542 -1266 3 741 1683 99 13 4 chr3 20523092 20523325 -139076458 + L1_Mus3 LINE L1 6391 6625 -13 3 741 1397 241 104 43 chr3 20523332 20524033 -139075750 + Lx7 LINE L1 5415 6179 -1517 3 741 205 239 15 15 chr3 20524041 20524109 -139075674 + (TA)n Simple_repeat Simple_repeat 1 68 0 3 741 300 359 8 33 chr3 20524523 20524644 -139075139 + Charlie1a DNA MER1_type 42 159 -1296 3 741 802 250 15 5 chr3 20524903 20525099 -139074684 + Charlie1a DNA MER1_type 507 704 -751 3 741 636 307 188 25 chr3 20525099 20525626 -139074157 - MER45B DNA Tip100 0 1040 428 3 741 292 308 8 70 chr3 20526223 20526352 -139073431 - MER45B DNA Tip100 -873 167 52 3 741 276 340 80 6 chr3 20526397 20526560 -139073223 + Charlie1a DNA MER1_type 714 888 -567 3 741 913 167 156 13 chr3 20526579 20526810 -139072973 + RLTR30 LTR ERV1 116 379 0 3 741 625 275 13 22 chr3 20526815 20527042 -139072741 - L1_Mur3 LINE L1 -299 5581 5357 3 741 2119 238 59 9 chr3 20527042 20527569 -139072214 - ORR1C2-int LTR MaLR -956 553 1 3 741 979 228 139 6 chr3 20527574 20527741 -139072042 - ORR1C2 LTR MaLR -13 371 148 3 741 590 39 13 0 chr3 20527741 20527818 -139071965 + (GA)n Simple_repeat Simple_repeat 1 78 0 3 741 979 243 132 28 chr3 20527818 20527930 -139071853 - ORR1C2 LTR MaLR -208 176 52 3 741 1044 211 114 28 chr3 20527931 20528185 -139071598 + ORR1B2 LTR MaLR 1 276 -91 4 741 2296 182 75 87 chr3 20528186 20528762 -139071021 - RMER4B LTR ERVK -16 569 1 4 741 980 181 46 5 chr3 20528830 20529024 -139070759 + ORR1B2-int LTR MaLR 31 232 -1277 4 741 3278 82 0 7 chr3 20529792 20530200 -139069583 - L1_Mus1 LINE L1 0 6567 6163 4 741 258 232 0 18 chr3 20530520 20530577 -139069206 + ORR1B2-int LTR MaLR 218 273 -1097 4 741 10510 20 0 0 chr3 20530577 20531765 -139068018 + L1_Mm LINE L1 4514 5701 -182 4 741 2055 109 264 29 chr3 20531765 20532209 -139067574 - RLTR6_Mm LTR ERV1 -70 584 37 4 741 239 220 211 39 chr3 20532211 20532315 -139067468 - RLTR6_Mm LTR ERV1 -532 122 1 4 741 17457 51 1 0 chr3 20532315 20534378 -139065405 - RLTR6-int LTR ERV1 0 7778 5715 4 741 14248 68 44 8 chr3 20534366 20536403 -139063380 - RLTR6-int LTR ERV1 -5553 2225 23 4 741 2027 124 251 34 chr3 20536406 20536872 -139062911 - RLTR6_Mm LTR ERV1 -51 603 37 4 741 8068 29 0 0 chr3 20536977 20537863 -139061920 + L1Md_T LINE L1 5697 6582 0 4 741 2732 201 64 68 chr3 20537864 20538552 -139061231 + ORR1B2-int LTR MaLR 820 1504 -5 4 741 1901 215 25 6 chr3 20538557 20538917 -139060866 + ORR1B2 LTR MaLR 1 367 0 4 741 341 284 45 0 chr3 20538919 20539007 -139060776 - ORR1C2 LTR MaLR -278 96 5 3 741 200 143 24 0 chr3 20539288 20539330 -139060453 + CT-rich Low_complexity Low_complexity 1 43 0 4 741 24 0 0 0 chr3 20540568 20540592 -139059191 + AT_rich Low_complexity Low_complexity 1 24 0 4 741 2335 147 7 0 chr3 20540951 20541353 -139058430 + L1_Mus4 LINE L1 5511 5935 -701 5 741 405 0 0 0 chr3 20541365 20541410 -139058373 + (TAAAA)n Simple_repeat Simple_repeat 2 46 0 5 741 1780 264 36 101 chr3 20541419 20541928 -139057855 + Lx5 LINE L1 6461 6952 -98 5 741 7630 59 14 0 chr3 20541928 20542809 -139056974 + RLTR13B1 LTR ERVK 1 893 0 5 741 1780 264 36 101 chr3 20542809 20542930 -139056853 + Lx5 LINE L1 6953 7050 0 5 741 823 330 7 66 chr3 20543041 20543346 -139056437 - B4A SINE B4 0 292 6 5 741 21 36 0 0 chr3 20543467 20543495 -139056288 + AT_rich Low_complexity Low_complexity 1 28 0 5 741 23 78 0 0 chr3 20544639 20544690 -139055093 + AT_rich Low_complexity Low_complexity 1 51 0 5 741 30 27 0 0 chr3 20544812 20544849 -139054934 + AT_rich Low_complexity Low_complexity 1 37 0 5 741 372 328 112 10 chr3 20544909 20545106 -139054677 - MLT1F2 LTR MaLR -32 528 312 5 741 279 292 14 0 chr3 20545196 20545268 -139054515 - MTD LTR MaLR 0 419 347 5 741 937 177 8 104 chr3 20545282 20545522 -139054261 - RLTR28 LTR ERVL -14 510 294 6 741 21 0 0 0 chr3 20545525 20545546 -139054237 + AT_rich Low_complexity Low_complexity 1 21 0 6 741 188 133 0 43 chr3 20545546 20545593 -139054190 + (ATG)n Simple_repeat Simple_repeat 3 47 0 6 741 645 208 17 0 chr3 20545593 20545713 -139054070 - B1_Mur4 SINE Alu 0 150 29 6 741 1007 167 52 0 chr3 20545706 20545898 -139053885 - RLTR28 LTR ERVL -240 284 83 6 741 345 263 126 42 chr3 20546257 20546400 -139053383 + MLT1A1 LTR MaLR 254 408 0 6 741 408 253 29 23 chr3 20547380 20547485 -139052298 + (TG)n Simple_repeat Simple_repeat 2 108 0 6 741 249 108 0 0 chr3 20547485 20547522 -139052261 + (TA)n Simple_repeat Simple_repeat 2 38 0 6 741 408 253 29 23 chr3 20547522 20547590 -139052193 + (TG)n Simple_repeat Simple_repeat 2 69 0 6 741 305 204 67 22 chr3 20547566 20547701 -139052082 + (TATATG)n Simple_repeat Simple_repeat 2 142 0 6 741 340 234 25 6 chr3 20547704 20547867 -139051916 + (TG)n Simple_repeat Simple_repeat 2 167 0 6 741 247 221 25 49 chr3 20548068 20548149 -139051634 + (TG)n Simple_repeat Simple_repeat 2 80 0 7 741 234 0 0 0 chr3 20548977 20549003 -139050780 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 7 741 322 363 89 0 chr3 20549043 20549167 -139050616 - B4 SINE B4 -4 288 154 7 741 2318 255 116 65 chr3 20549160 20550065 -139049718 - RMER17B LTR ERVK -7 951 1 7 741 299 309 0 30 chr3 20550098 20550198 -139049585 - B4 SINE B4 -192 100 4 7 741 355 313 77 27 chr3 20550728 20550891 -139048892 + MIRb SINE MIR 60 239 -29 7 741 26 0 0 0 chr3 20551017 20551043 -139048740 + AT_rich Low_complexity Low_complexity 1 26 0 7 741 732 299 19 19 chr3 20551062 20551277 -139048506 - B3 SINE B2 0 216 2 7 741 839 268 0 25 chr3 20551291 20551494 -139048289 - B3A SINE B2 0 198 1 7 741 345 292 66 16 chr3 20551554 20551676 -139048107 + MLT1A1 LTR MaLR 3 130 -278 7 741 306 327 19 29 chr3 20551846 20551950 -139047833 + RMER15 LTR ERVL 296 398 -177 7 741 2007 189 133 68 chr3 20552317 20552773 -139047010 + RLTR20D LTR ERVK 1 476 -92 8 741 387 0 0 0 chr3 20552773 20552816 -139046967 + (TG)n Simple_repeat Simple_repeat 2 44 0 8 741 2007 189 133 68 chr3 20552816 20552892 -139046891 + RLTR20D LTR ERVK 477 568 0 8 741 8863 81 51 7 chr3 20556229 20557671 -139042112 + Lx3_Mus LINE L1 5502 7001 -8 8 741 570 273 13 58 chr3 20557841 20558013 -139041770 + B3A SINE B2 6 168 -30 8 741 691 273 21 29 chr3 20558133 20558342 -139041441 + B3A SINE B2 16 216 0 8 741 210 37 0 0 chr3 20558611 20558638 -139041145 + (TTG)n Simple_repeat Simple_repeat 1 27 0 8 741 1022 90 0 0 chr3 20558638 20558771 -139041012 - B1_Mus1 SINE Alu -13 135 3 8 741 700 274 64 137 chr3 20558920 20559496 -139040287 - RMER20B LTR ERVK -15 612 30 8 741 214 308 0 58 chr3 20561864 20561933 -139037850 + MIRc SINE MIR 118 182 -86 8 741 278 265 47 24 chr3 20562004 20562089 -139037694 + B3A SINE B2 3 89 -109 8 741 506 201 240 0 chr3 20563136 20563290 -139036493 - RMER1C Other Other -8 1334 1144 9 741 1639 187 77 53 chr3 20563409 20563748 -139036035 - ORR1B1 LTR MaLR -47 347 1 9 741 942 132 28 0 chr3 20564545 20564689 -139035094 - ORR1A2 LTR MaLR -87 240 93 9 741 7200 178 52 67 chr3 20564699 20566898 -139032885 - Lx2 LINE L1 -1 6996 5079 9 741 1260 132 16 0 chr3 20566898 20567088 -139032695 - B2_Mm2 SINE B2 -1 194 2 9 741 4670 210 84 165 chr3 20567088 20567655 -139032128 - Lx2 LINE L1 -799 5078 4496 9 741 5359 51 19 3 chr3 20567655 20568340 -139031443 - L1Md_F2 LINE L1 0 6582 5887 9 741 4670 210 84 165 chr3 20568340 20569542 -139030241 - Lx2 LINE L1 -1382 4495 3222 9 741 2662 248 30 46 chr3 20569678 20570668 -139029115 - L1VL2 LINE L1 -5512 823 9 9 741 732 84 9 0 chr3 20570668 20570775 -139029008 - ORR1A2 LTR MaLR -219 108 1 9 741 9936 138 54 83 chr3 20570777 20572796 -139026987 - ORR1A2-int LTR MaLR -2 1961 2 9 741 366 82 0 0 chr3 20572797 20572846 -139026937 - ORR1A2 LTR MaLR 0 326 278 9 741 2484 77 48 3 chr3 20572842 20573196 -139026587 + MTA_Mm LTR MaLR 27 396 0 9 741 1545 179 57 22 chr3 20573150 20573464 -139026319 - ORR1A2 LTR MaLR -2 325 1 9 741 203 175 0 0 chr3 20573486 20573526 -139026257 + (TTTG)n Simple_repeat Simple_repeat 1 40 0 1 741 678 213 28 14 chr3 20573526 20573669 -139026114 - B1_Mur4 SINE Alu 0 150 6 1 741 741 183 27 27 chr3 20573824 20573970 -139025813 - B1_Mus1 SINE Alu 0 148 3 1 741 778 275 21 11 chr3 20575636 20575827 -139023956 + RLTR18B LTR ERVK 1 193 -319 1 741 271 250 14 27 chr3 20575934 20576008 -139023775 + RLTR18 LTR ERVK 120 192 -424 1 741 559 317 169 8 chr3 20576004 20576252 -139023531 + RLTR18B LTR ERVK 116 403 -109 1 741 28 63 0 37 chr3 20576252 20576334 -139023449 + AT_rich Low_complexity Low_complexity 1 79 0 1 741 408 40 0 0 chr3 20576404 20576454 -139023329 + (TA)n Simple_repeat Simple_repeat 2 51 0 1 741 220 325 118 31 chr3 20576501 20576628 -139023155 - B1_Mur4 SINE Alu 0 150 13 1 741 473 362 59 22 chr3 20576774 20577096 -139022687 - Lx8 LINE L1 -153 7320 6987 1 741 706 161 114 0 chr3 20577137 20577348 -139022435 - Lx9 LINE L1 -1 7643 7409 1 741 734 221 63 0 chr3 20577342 20577532 -139022251 + Lx3C LINE L1 6773 6974 -2 1 741 1284 203 104 13 chr3 20577565 20577864 -139021919 - ORR1C2 LTR MaLR -22 362 37 1 741 30 27 0 0 chr3 20578103 20578140 -139021643 + AT_rich Low_complexity Low_complexity 1 37 0 1 742 2450 214 174 56 chr3 20578327 20578600 -139021183 + RLTR40 LTR ERVK 1 319 -498 1 742 727 154 17 0 chr3 20578600 20578717 -139021066 + PB1D9 SINE Alu 1 119 -1 1 742 2450 214 174 56 chr3 20578717 20579174 -139020609 + RLTR40 LTR ERVK 320 817 0 1 742 509 299 58 7 chr3 20580275 20580413 -139019370 - B3A SINE B2 -53 145 1 1 742 304 290 73 34 chr3 20580413 20580587 -139019196 - B4 SINE B4 -62 230 2 1 742 23 68 0 0 chr3 20581112 20581156 -139018627 + AT_rich Low_complexity Low_complexity 1 44 0 1 742 308 293 32 16 chr3 20582476 20582601 -139017182 + MIRc SINE MIR 98 224 -44 1 742 227 300 14 0 chr3 20583353 20583423 -139016360 - ID4 SINE ID -11 72 2 1 742 1147 57 0 6 chr3 20584072 20584231 -139015552 + L1Md_F2 LINE L1 6423 6580 -2 1 742 23 78 0 0 chr3 20584436 20584487 -139015296 + AT_rich Low_complexity Low_complexity 1 51 0 1 742 786 89 0 0 chr3 20585330 20585442 -139014341 + (GA)n Simple_repeat Simple_repeat 2 113 0 1 742 291 369 9 35 chr3 20585748 20585863 -139013920 - B4A SINE B4 -140 152 41 1 742 278 302 57 57 chr3 20586028 20586151 -139013632 - MT2B2 LTR ERVL -319 265 143 1 742 22 0 0 0 chr3 20586191 20586213 -139013570 + AT_rich Low_complexity Low_complexity 1 22 0 1 742 2356 62 18 33 chr3 20586911 20587243 -139012540 + IAPLTR2b LTR ERVK 1 327 0 1 742 50979 30 15 19 chr3 20587244 20593821 -139005962 + IAPEz-int LTR ERVK 9 6479 -2 1 742 2358 62 18 33 chr3 20593823 20594155 -139005628 + IAPLTR2b LTR ERVK 1 327 0 1 742 324 221 0 0 chr3 20594176 20594253 -139005530 + (TG)n Simple_repeat Simple_repeat 2 78 0 1 742 877 263 98 47 chr3 20594710 20594965 -139004818 - MTD LTR MaLR -16 403 136 1 742 201 154 0 0 chr3 20595031 20595070 -139004713 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 1 742 239 266 16 0 chr3 20595193 20595257 -139004526 + B4 SINE B4 11 75 -217 1 742 644 302 151 9 chr3 20595262 20595586 -139004197 + ORR1D2 LTR MaLR 1 370 0 1 742 727 162 176 0 chr3 20596490 20596638 -139003145 - URR1A DNA MER1_type -52 174 1 1 742 1082 80 0 0 chr3 20596741 20596879 -139002904 - B1_Mus2 SINE Alu -7 140 3 1 742 204 40 0 0 chr3 20597030 20597055 -139002728 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 1 742 1700 308 110 37 chr3 20597239 20598265 -139001518 - Lx8 LINE L1 -123 7350 6250 1 742 620 154 48 8 chr3 20598724 20598848 -139000935 + Lx2 LINE L1 6866 6994 -3 1 742 1339 293 27 48 chr3 20599215 20599775 -139000008 + L1_Mur3 LINE L1 4714 5261 -619 1 742 2277 201 80 77 chr3 20600143 20600757 -138999026 + RLTR18 LTR ERVK 1 616 0 1 742 835 299 60 53 chr3 20601048 20601397 -138998386 - ORR1E LTR MaLR 0 379 1 1 742 207 329 12 0 chr3 20601634 20601716 -138998067 + (CATATA)n Simple_repeat Simple_repeat 2 84 0 1 742 231 215 0 0 chr3 20601722 20601787 -138997996 + (TA)n Simple_repeat Simple_repeat 2 66 0 1 742 300 235 13 25 chr3 20601874 20602031 -138997752 + (CATATA)n Simple_repeat Simple_repeat 6 160 0 1 742 7981 112 59 8 chr3 20602137 20603460 -138996323 + Lx2A LINE L1 5628 6999 -9 1 742 321 89 0 0 chr3 20603892 20603937 -138995846 + (GGA)n Simple_repeat Simple_repeat 3 47 0 1 742 731 278 54 54 chr3 20604464 20604836 -138994947 + L1ME2z LINE L1 5791 6162 -282 1 742 1049 309 8 34 chr3 20604842 20605161 -138994622 + MTE2b LTR MaLR 2 335 -84 1 742 4135 87 32 2 chr3 20605291 20605893 -138993890 - L1_Mus3 LINE L1 -354 6284 5665 1 742 2231 108 6 11 chr3 20605893 20606241 -138993542 + L1_Mus3 LINE L1 6292 6637 -1 1 742 5564 54 9 0 chr3 20606556 20607256 -138992527 - L1Md_F2 LINE L1 -7 6575 5870 1 742 360 165 0 0 chr3 20607564 20607655 -138992128 + T-rich Low_complexity Low_complexity 1 91 0 1 742 262 270 43 43 chr3 20610668 20610761 -138989022 + MTEa LTR MaLR 1 93 -286 1 742 443 220 184 0 chr3 20610838 20610979 -138988804 + MTEa LTR MaLR 211 377 -2 1 742 423 252 182 19 chr3 20610979 20611188 -138988595 - MER110A LTR ERV1 -186 282 39 1 742 235 93 36 36 chr3 20611690 20611746 -138988037 + (TCTCTG)n Simple_repeat Simple_repeat 4 59 0 1 742 426 154 0 0 chr3 20611768 20611846 -138987937 + (TG)n Simple_repeat Simple_repeat 2 79 0 1 742 741 60 51 0 chr3 20612255 20612372 -138987411 + (TTTC)n Simple_repeat Simple_repeat 4 126 0 1 742 576 130 0 0 chr3 20612388 20612480 -138987303 + (TCCC)n Simple_repeat Simple_repeat 4 95 0 1 742 588 298 0 65 chr3 20612664 20612833 -138986950 + B3 SINE B2 1 158 -58 1 742 587 257 51 28 chr3 20612901 20613077 -138986706 - MTE2b LTR MaLR 0 379 200 1 742 662 272 15 56 chr3 20613169 20613364 -138986419 - MTE2b LTR MaLR -178 201 15 1 742 346 323 65 35 chr3 20613850 20614020 -138985763 + MER58A DNA MER1_type 7 181 -43 1 742 630 99 0 0 chr3 20614224 20614315 -138985468 + (CA)n Simple_repeat Simple_repeat 1 91 0 1 742 319 381 19 9 chr3 20614938 20615044 -138984739 + PB1D10 SINE Alu 1 107 -10 1 742 2146 255 16 24 chr3 20615221 20615772 -138984011 - Lx6 LINE L1 -1 7459 6913 1 742 2715 258 83 13 chr3 20615791 20616583 -138983200 - Lx6 LINE L1 -758 6702 5855 1 742 2677 146 76 43 chr3 20616591 20617013 -138982770 - RMER16 LTR ERVK 0 533 93 1 742 3009 62 31 5 chr3 20617013 20617399 -138982384 + MTA_Mm LTR MaLR 1 396 0 1 742 2677 146 76 43 chr3 20617399 20617492 -138982291 - RMER16 LTR ERVK -441 92 1 1 742 1887 191 47 14 chr3 20617499 20617923 -138981860 - Lx6 LINE L1 -36 5844 5407 1 742 3342 200 36 23 chr3 20617919 20618222 -138981561 - Lx4B LINE L1 -428 6630 6332 1 742 1872 103 78 62 chr3 20618222 20618543 -138981240 + ORR1A3 LTR MaLR 1 326 0 1 742 3342 200 36 23 chr3 20618543 20619017 -138980766 - Lx4B LINE L1 -727 6331 5843 1 742 4140 156 38 69 chr3 20619027 20619971 -138979812 - Lx4B LINE L1 -315 5562 4648 1 742 284 229 14 0 chr3 20619973 20620043 -138979740 - Lx6 LINE L1 -783 5097 5027 1 742 22 0 0 0 chr3 20620533 20620555 -138979228 + AT_rich Low_complexity Low_complexity 1 22 0 1 742 405 0 0 0 chr3 20620574 20620619 -138979164 + (TA)n Simple_repeat Simple_repeat 1 45 0 1 742 1607 264 66 19 chr3 20620622 20621155 -138978628 - Lx8 LINE L1 -37 7436 6879 1 742 1333 127 5 5 chr3 20621241 20621463 -138978320 - L1_Mus4 LINE L1 -2 6634 6413 1 742 694 363 71 17 chr3 20621531 20621884 -138977899 + MT2A LTR ERVL 20 391 -142 1 742 234 0 0 0 chr3 20621886 20621912 -138977871 + (GA)n Simple_repeat Simple_repeat 1 26 0 1 742 234 346 60 36 chr3 20622557 20622725 -138977058 - L2 LINE L2 -849 2570 2399 1 742 1112 88 58 0 chr3 20623563 20623734 -138976049 - L1Md_F2 LINE L1 -23 6559 6379 1 742 780 99 75 0 chr3 20624487 20624621 -138975162 - L1_Mm LINE L1 -1020 4863 4723 1 742 219 36 0 0 chr3 20624621 20624649 -138975134 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 1 742 255 270 113 28 chr3 20624706 20624847 -138974936 - L1MC4a LINE L1 -47 7835 7683 1 742 297 0 0 0 chr3 20625583 20625616 -138974167 + (TG)n Simple_repeat Simple_repeat 1 33 0 1 742 1598 239 66 18 chr3 20626251 20626643 -138973140 + MTD LTR MaLR 1 411 -8 1 742 227 306 42 0 chr3 20626687 20626759 -138973024 - ID2 SINE ID -5 78 4 1 742 639 292 129 47 chr3 20626771 20626903 -138972880 - L1M2 LINE L1 -1817 4326 4181 1 742 216 0 0 0 chr3 20626903 20626927 -138972856 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 1 742 639 292 129 47 chr3 20626927 20627476 -138972307 - L1M2 LINE L1 -1963 4180 3590 1 742 210 71 0 0 chr3 20627997 20628025 -138971758 + (A)n Simple_repeat Simple_repeat 1 28 0 1 742 26 0 0 0 chr3 20628202 20628228 -138971555 + AT_rich Low_complexity Low_complexity 1 26 0 1 742 380 340 50 50 chr3 20628295 20628436 -138971347 + B3A SINE B2 21 166 -32 1 742 1508 209 52 121 chr3 20628436 20628601 -138971182 + RLTR41 LTR ERV1 1 156 -290 1 742 360 0 0 0 chr3 20628601 20628641 -138971142 + (TG)n Simple_repeat Simple_repeat 1 40 0 1 742 1508 209 52 121 chr3 20628641 20628954 -138970829 + RLTR41 LTR ERV1 157 446 0 1 742 380 340 50 50 chr3 20628954 20628973 -138970810 + B3A SINE B2 167 181 -17 1 742 243 0 0 0 chr3 20628985 20629012 -138970771 + (CA)n Simple_repeat Simple_repeat 2 28 0 1 742 387 0 0 0 chr3 20629012 20629054 -138970729 + (GA)n Simple_repeat Simple_repeat 2 44 0 1 742 519 292 137 0 chr3 20629132 20629300 -138970483 + B3 SINE B2 16 206 -10 1 742 297 0 0 0 chr3 20630355 20630388 -138969395 + (CA)n Simple_repeat Simple_repeat 2 34 0 1 742 379 358 0 0 chr3 20630551 20630671 -138969112 + B1_Mur1 SINE Alu 23 142 -7 1 742 41 21 0 0 chr3 20630700 20630748 -138969035 + AT_rich Low_complexity Low_complexity 1 48 0 1 742 282 309 0 0 chr3 20630748 20630829 -138968954 - ID4 SINE ID 0 83 3 1 742 195 114 0 0 chr3 20631441 20631476 -138968307 + (TCTCTG)n Simple_repeat Simple_repeat 2 36 0 1 742 432 37 0 0 chr3 20631478 20631532 -138968251 + (CA)n Simple_repeat Simple_repeat 1 54 0 1 742 22 80 0 0 chr3 20632069 20632119 -138967664 + AT_rich Low_complexity Low_complexity 1 50 0 1 742 632 318 20 0 chr3 20632187 20632335 -138967448 + RSINE1 SINE B4 15 165 0 1 742 264 277 0 0 chr3 20633215 20633280 -138966503 + CT-rich Low_complexity Low_complexity 2 66 0 1 742 351 0 0 0 chr3 20635434 20635473 -138964310 + (CA)n Simple_repeat Simple_repeat 2 40 0 2 742 905 182 113 5 chr3 20635491 20635695 -138964088 - URR1A DNA MER1_type 0 226 1 2 742 240 302 16 0 chr3 20636072 20636135 -138963648 - RSINE1 SINE B4 -24 141 78 2 742 420 227 68 0 chr3 20636264 20636352 -138963431 - B4A SINE B4 -196 96 3 2 742 233 211 118 0 chr3 20636656 20636732 -138963051 - L1M3 LINE L1 -558 5631 5547 2 742 6480 120 32 1 chr3 20636850 20637852 -138961931 + Lx2 LINE L1 5961 6993 -4 2 742 191 36 36 0 chr3 20637852 20637880 -138961903 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 2 742 684 292 32 32 chr3 20637995 20638211 -138961572 - B3A SINE B2 0 216 1 2 742 546 281 64 26 chr3 20638662 20638929 -138960854 - L1MD LINE L1 -679 5680 5404 2 742 201 175 0 0 chr3 20638951 20638991 -138960792 + (TATG)n Simple_repeat Simple_repeat 4 43 0 2 742 458 300 109 50 chr3 20639019 20639240 -138960543 - B4A SINE B4 0 292 59 2 742 499 254 91 5 chr3 20639337 20639535 -138960248 - L1MD LINE L1 -828 5318 5104 2 742 5169 168 23 29 chr3 20639535 20640848 -138958935 + L1Md_F LINE L1 2 1108 -5411 2 742 15705 194 3 148 chr3 20640854 20642602 -138957181 + L1Md_T LINE L1 1170 2786 -3094 2 742 5150 9 0 0 chr3 20642602 20643173 -138956610 + L1Md_T LINE L1 6012 6582 0 2 742 27002 29 0 4 chr3 20643173 20646598 -138953185 + L1Md_T LINE L1 2248 5586 -297 2 742 8024 55 0 0 chr3 20646598 20647594 -138952189 + L1Md_T LINE L1 5587 6582 0 2 742 360 238 11 1 chr3 20647607 20647723 -138952060 - L1_Mur3 LINE L1 -1738 4405 4263 2 742 207 0 0 0 chr3 20647793 20647816 -138951967 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 2 742 245 263 170 19 chr3 20647957 20648116 -138951667 - L1MD LINE L1 -1238 4908 4726 2 742 1367 247 127 6 chr3 20648119 20648461 -138951322 + MTD LTR MaLR 1 386 -33 2 742 279 0 0 0 chr3 20648461 20648492 -138951291 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2 742 1367 247 127 6 chr3 20648492 20648511 -138951272 + MTD LTR MaLR 387 405 -14 2 742 31942 89 10 4 chr3 20648596 20654755 -138945028 - L1Md_F2 LINE L1 -7 6575 380 2 742 813 65 0 0 chr3 20654928 20655036 -138944747 + (TTTC)n Simple_repeat Simple_repeat 1 108 0 2 742 338 290 45 45 chr3 20655320 20655432 -138944351 - B1F2 SINE Alu -3 146 35 2 742 406 351 46 29 chr3 20655403 20655576 -138944207 - MLT1A0 LTR MaLR -162 203 28 2 742 459 0 0 0 chr3 20656086 20656137 -138943646 + (TC)n Simple_repeat Simple_repeat 2 52 0 2 742 240 100 0 0 chr3 20656137 20656176 -138943607 + (TG)n Simple_repeat Simple_repeat 1 40 0 2 742 415 302 122 0 chr3 20656179 20656318 -138943465 - RSINE1 SINE B4 -5 160 5 2 742 235 333 47 111 chr3 20656865 20657037 -138942746 - B3 SINE B2 -29 187 27 2 742 31973 74 6 2 chr3 20657079 20663230 -138936553 - L1Md_F2 LINE L1 -14 6568 396 2 742 454 103 23 0 chr3 20664397 20664484 -138935299 + (TA)n Simple_repeat Simple_repeat 2 90 0 2 742 1290 119 27 5 chr3 20664528 20664748 -138935035 + Lx LINE L1 6425 6649 -5 2 742 235 318 37 0 chr3 20664908 20665015 -138934768 + L1M2 LINE L1 5681 5791 -509 2 742 235 224 35 0 chr3 20665031 20665089 -138934694 - PB1 SINE Alu -56 71 12 2 742 4873 109 24 1 chr3 20665519 20666395 -138933388 + L1VL4 LINE L1 536 1436 -2478 2 742 5534 132 32 1 chr3 20666515 20667393 -138932390 - Lx LINE L1 0 6654 5750 2 742 4573 87 24 17 chr3 20667393 20668147 -138931636 + L1VL4 LINE L1 1423 2172 -1742 2 742 6438 128 32 2 chr3 20668144 20669490 -138930293 + Lx2 LINE L1 5261 6643 -354 2 742 1327 149 5 0 chr3 20669490 20669712 -138930071 + Lx2 LINE L1 6775 6997 0 2 742 1301 307 63 10 chr3 20669855 20670393 -138929390 - Lx8 LINE L1 -349 7124 6564 2 742 413 338 38 57 chr3 20670426 20670571 -138929212 - ID_B1 SINE B4 -45 179 38 2 742 742 259 172 46 chr3 20670571 20670943 -138928840 + ORR1C1 LTR MaLR 1 364 -14 2 742 725 312 17 0 chr3 20671496 20671672 -138928111 - 7SLRNA srpRNA srpRNA -111 203 25 2 742 900 326 130 39 chr3 20671723 20672598 -138927185 - L1MEf LINE L1 -4594 1606 652 2 742 330 306 82 8 chr3 20672605 20672727 -138927056 - B1F1 SINE Alu -2 147 17 2 742 2040 189 5 29 chr3 20673474 20673560 -138926223 - ORR1B1-int LTR MaLR -127 1382 1303 2 742 497 256 157 74 chr3 20673560 20673898 -138925885 - RLTR9A LTR ERVK 0 368 3 2 742 2040 189 5 29 chr3 20673898 20674219 -138925564 - ORR1B1-int LTR MaLR -207 1302 985 2 742 356 287 137 67 chr3 20674217 20674516 -138925267 + MLT1B LTR MaLR 61 380 -10 2 742 231 295 40 111 chr3 20674635 20674761 -138925022 + LTR41 LTR ERVL 83 199 -569 2 742 279 281 62 62 chr3 20676596 20676725 -138923058 - MLT1A LTR MaLR -24 341 213 2 742 314 249 16 24 chr3 20676799 20676884 -138922899 - MLT1A LTR MaLR -314 94 7 2 742 789 158 0 0 chr3 20677387 20677526 -138922257 + CT-rich Low_complexity Low_complexity 3 141 0 2 742 752 199 102 6 chr3 20678296 20678473 -138921310 - B3 SINE B2 0 216 23 2 742 26 30 0 0 chr3 20678517 20678550 -138921233 + AT_rich Low_complexity Low_complexity 1 33 0 2 742 2059 276 120 19 chr3 20678731 20679540 -138920243 - Lx8 LINE L1 -265 7208 6318 2 742 3505 18 2 0 chr3 20679582 20679977 -138919806 + MTA_Mm LTR MaLR 1 396 0 2 742 314 26 0 0 chr3 20679977 20680015 -138919768 - ORR1A0 LTR MaLR -308 38 1 2 742 766 276 188 78 chr3 20680048 20680511 -138919272 - RLTR20C LTR ERVK -20 514 1 2 742 452 185 0 9 chr3 20680665 20680774 -138919009 + (TG)n Simple_repeat Simple_repeat 1 108 0 2 742 977 144 10 5 chr3 20680820 20681016 -138918767 - RLTR42-int LTR ERVK -3203 2319 2123 2 742 454 169 8 87 chr3 20681061 20681243 -138918540 - RLTR42-int LTR ERVK -3396 2126 1913 2 742 240 111 0 0 chr3 20682073 20682109 -138917674 + (TAA)n Simple_repeat Simple_repeat 1 36 0 2 742 435 170 0 11 chr3 20683392 20683481 -138916302 - RLTR42-int LTR ERVK -3895 1627 1540 2 742 1200 237 48 31 chr3 20683560 20683974 -138915809 - RLTR42-int LTR ERVK -3997 1525 1105 2 742 252 158 0 0 chr3 20684957 20684995 -138914788 - ORR1C2 LTR MaLR -346 38 1 2 742 522 0 0 0 chr3 20685318 20685376 -138914407 + (TC)n Simple_repeat Simple_repeat 2 59 0 2 742 302 341 55 39 chr3 20685376 20685504 -138914279 - B1F SINE Alu -3 146 17 2 742 420 377 24 12 chr3 20685390 20685554 -138914229 - ID_B1 SINE B4 -12 212 47 2 742 1922 282 53 40 chr3 20685630 20686865 -138912918 + RMER1A Other Other 12 794 -236 2 742 1912 168 74 33 chr3 20687115 20687478 -138912305 - ORR1C1 LTR MaLR 0 378 1 2 742 328 298 137 57 chr3 20687487 20687925 -138911858 + L1MEf LINE L1 1623 2095 -4147 2 742 305 338 42 30 chr3 20687983 20688151 -138911632 + L1MEf LINE L1 2166 2335 -3811 2 742 315 104 0 0 chr3 20688208 20688256 -138911527 + (TAAA)n Simple_repeat Simple_repeat 1 48 0 2 742 27 0 0 0 chr3 20688464 20688491 -138911292 + AT_rich Low_complexity Low_complexity 1 27 0 2 742 3118 32 62 0 chr3 20688517 20688890 -138910893 - MTA_Mm LTR MaLR 0 396 1 2 742 853 332 64 38 chr3 20689445 20689946 -138909837 - Lx8 LINE L1 -35 7438 6925 2 742 429 339 20 6 chr3 20689945 20690163 -138909620 + Lx8 LINE L1 6665 6897 -576 2 742 419 329 49 68 chr3 20690163 20690489 -138909294 + L1MEf LINE L1 2768 3087 -3059 2 742 387 0 0 0 chr3 20692164 20692207 -138907576 + (TG)n Simple_repeat Simple_repeat 1 43 0 2 742 238 292 15 0 chr3 20692244 20692309 -138907474 - ID4_ SINE ID -17 66 1 2 742 311 294 71 66 chr3 20692981 20693163 -138906620 - Tigger15a DNA TcMar -432 283 101 2 742 4200 75 0 0 chr3 20694880 20695454 -138904329 - L1_Mus1 LINE L1 0 6567 6029 2 742 435 191 352 0 chr3 20695502 20695669 -138904114 - ORR1C1 LTR MaLR -151 227 2 2 742 244 342 65 42 chr3 20696642 20696810 -138902973 + MER5A DNA MER1_type 16 187 -2 2 742 483 18 0 0 chr3 20697414 20697470 -138902313 + (GA)n Simple_repeat Simple_repeat 1 56 0 2 742 314 304 20 0 chr3 20697644 20697746 -138902037 + L1MEb LINE L1 343 446 -5648 2 742 207 100 75 0 chr3 20697784 20697824 -138901959 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 2 742 300 333 92 5 chr3 20698143 20698339 -138901444 + L1MEb LINE L1 741 953 -5247 2 742 24 32 0 0 chr3 20698792 20698823 -138900960 + AT_rich Low_complexity Low_complexity 1 31 0 2 742 1885 171 74 33 chr3 20698935 20699298 -138900485 + ORR1C1 LTR MaLR 1 378 0 2 742 1922 287 50 35 chr3 20699548 20700783 -138899000 - RMER1A Other Other -236 794 12 2 742 420 377 24 12 chr3 20700859 20701023 -138898760 + ID_B1 SINE B4 47 212 -12 2 742 302 341 55 39 chr3 20700909 20701037 -138898746 + B1F SINE Alu 17 146 -3 2 742 396 0 0 0 chr3 20701037 20701081 -138898702 + (GA)n Simple_repeat Simple_repeat 2 45 0 2 742 252 158 0 0 chr3 20701404 20701442 -138898341 + ORR1C2 LTR MaLR 1 38 -346 2 742 1200 237 48 31 chr3 20702425 20702839 -138896944 + RLTR42-int LTR ERVK 1105 1525 -3997 2 742 435 170 0 11 chr3 20702918 20703007 -138896776 + RLTR42-int LTR ERVK 1540 1627 -3895 2 742 240 111 0 0 chr3 20704290 20704326 -138895457 + (TTA)n Simple_repeat Simple_repeat 1 36 0 2 742 454 169 8 87 chr3 20705156 20705338 -138894445 + RLTR42-int LTR ERVK 1913 2126 -3396 2 742 977 144 10 5 chr3 20705383 20705579 -138894204 + RLTR42-int LTR ERVK 2123 2319 -3203 2 742 360 103 0 0 chr3 20705625 20705683 -138894100 + (CA)n Simple_repeat Simple_repeat 1 58 0 2 742 318 161 143 0 chr3 20705709 20705765 -138894018 + HAL1-3A_ME LINE L1 1982 2045 -813 2 742 764 276 196 78 chr3 20705898 20706358 -138893425 + RLTR20D LTR ERVK 1 514 -20 2 742 2769 40 0 23 chr3 20706391 20706429 -138893354 + ORR1A0 LTR MaLR 1 38 -308 2 742 3475 18 5 0 chr3 20706429 20706823 -138892960 - MTA_Mm LTR MaLR 0 396 1 2 742 9408 20 6 2 chr3 20706823 20707917 -138891866 - MTA_Mm-int LTR MaLR 0 1098 1 2 742 3517 13 5 0 chr3 20707917 20708311 -138891472 - MTA_Mm LTR MaLR 0 396 1 2 742 2769 40 0 23 chr3 20708311 20708624 -138891159 + ORR1A0 LTR MaLR 39 344 -2 2 742 679 343 60 56 chr3 20708625 20709091 -138890692 + MLT2B1 LTR ERVL 17 484 -36 2 742 207 0 0 0 chr3 20709119 20709142 -138890641 + (CA)n Simple_repeat Simple_repeat 1 23 0 2 743 515 261 0 113 chr3 20710298 20710351 -138889432 + MTEb LTR MaLR 1 46 -333 2 743 781 216 107 15 chr3 20710351 20710548 -138889235 + B3 SINE B2 2 216 0 2 743 515 261 0 113 chr3 20710548 20710645 -138889138 + MTEb LTR MaLR 47 134 -245 2 743 2767 189 13 10 chr3 20710647 20711170 -138888613 - RLTR11A LTR ERVK -3 525 1 2 743 952 238 23 14 chr3 20711178 20711395 -138888388 + MTEb LTR MaLR 154 372 -7 2 743 1124 75 7 0 chr3 20711397 20711543 -138888240 + B1_Mm SINE Alu 1 147 0 2 743 264 137 0 0 chr3 20711545 20711596 -138888187 + (A)n Simple_repeat Simple_repeat 1 51 0 2 743 878 317 77 13 chr3 20712201 20712591 -138887192 + Lx8 LINE L1 6210 6624 -849 2 743 1351 132 118 0 chr3 20712591 20712819 -138886964 - ORR1A4 LTR MaLR 0 329 75 2 743 9223 164 75 16 chr3 20712853 20714705 -138885078 - ORR1A4-int LTR MaLR 0 1963 3 2 743 980 112 7 0 chr3 20714707 20714850 -138884933 - ORR1A4 LTR MaLR 0 329 186 2 743 276 50 25 0 chr3 20714845 20714885 -138884898 - ORR1A4 LTR MaLR -288 41 1 2 743 646 268 31 14 chr3 20715019 20715242 -138884541 + Lx8 LINE L1 6728 6954 -519 2 743 764 243 5 21 chr3 20715252 20715441 -138884342 - ORR1D1 LTR MaLR -7 367 182 2 743 1213 264 101 12 chr3 20715530 20715856 -138883927 - ORR1D1 LTR MaLR -5 369 15 3 743 232 264 32 21 chr3 20715871 20715964 -138883819 + Lx8 LINE L1 6977 7070 -403 2 743 333 348 43 0 chr3 20715992 20716130 -138883653 + Lx8 LINE L1 7132 7275 -198 2 743 215 256 36 12 chr3 20716436 20716519 -138883264 + (CATA)n Simple_repeat Simple_repeat 3 87 0 3 743 667 67 0 0 chr3 20716731 20716836 -138882947 + L1_Mus3 LINE L1 6534 6638 0 3 743 282 277 46 0 chr3 20717603 20717668 -138882115 - B1F SINE Alu -72 77 10 3 743 207 186 0 0 chr3 20717833 20717876 -138881907 + (TCCA)n Simple_repeat Simple_repeat 4 46 0 3 743 229 337 77 22 chr3 20718099 20718190 -138881593 + MER5A DNA MER1_type 7 102 -87 3 743 350 326 17 79 chr3 20719020 20719230 -138880553 + B3A SINE B2 8 204 -12 3 743 228 262 24 36 chr3 20719338 20719421 -138880362 - LTR88c LTR Genie? -3 859 778 3 743 459 0 0 0 chr3 20719902 20719953 -138879830 + (CA)n Simple_repeat Simple_repeat 2 52 0 3 743 207 0 0 0 chr3 20720089 20720112 -138879671 + (TTTG)n Simple_repeat Simple_repeat 3 25 0 3 743 263 169 0 14 chr3 20721126 20721198 -138878585 + GA-rich Low_complexity Low_complexity 3 73 0 3 743 281 333 11 0 chr3 20721491 20721578 -138878205 - ORSL-2b DNA Tip100 0 508 421 3 743 404 347 25 8 chr3 20721816 20721935 -138877848 - B4 SINE B4 -169 123 3 3 743 201 293 17 0 chr3 20722482 20722540 -138877243 + MIRm SINE MIR 13 71 -205 3 743 375 309 159 35 chr3 20722636 20722837 -138876946 + MLT1C LTR MaLR 45 270 -197 3 743 1777 256 40 2 chr3 20723237 20723636 -138876147 - MTC LTR MaLR -7 414 1 3 743 309 298 80 51 chr3 20724033 20724171 -138875612 - RMER15 LTR ERVL -12 563 422 3 743 241 299 72 103 chr3 20724181 20724375 -138875408 - Lx8 LINE L1 -224 7249 7062 3 743 226 326 40 59 chr3 20724436 20724537 -138875246 + MLT1G3 LTR MaLR 215 313 -282 3 743 224 287 64 7 chr3 20724719 20724841 -138874942 + MIR3 SINE MIR 83 211 -57 3 743 1054 244 9 0 chr3 20725545 20725762 -138874021 + URR1B DNA MER1_type 7 225 0 3 743 245 332 176 53 chr3 20727723 20728025 -138871758 - LTR85a LTR Gypsy? -349 353 15 3 743 180 0 0 0 chr3 20728903 20728923 -138870860 + (T)n Simple_repeat Simple_repeat 1 20 0 3 743 228 273 15 0 chr3 20729176 20729242 -138870541 - MER53 DNA hAT -116 77 11 3 743 287 108 0 3 chr3 20731439 20731502 -138868281 - L1_Mus2 LINE L1 0 6582 6518 3 743 35113 49 0 3 chr3 20732455 20737940 -138861843 + L1Md_T LINE L1 26 5589 -297 3 743 8432 32 0 0 chr3 20737940 20738936 -138860847 + L1Md_T LINE L1 5590 6585 0 3 743 350 269 111 42 chr3 20738952 20739169 -138860614 - L1M5 LINE L1 -3099 3047 2816 3 743 413 349 82 0 chr3 20739284 20739430 -138860353 - RSINE1 SINE B4 -6 159 2 3 743 212 171 77 26 chr3 20739528 20739606 -138860177 + T-rich Low_complexity Low_complexity 4 85 0 3 743 836 155 0 0 chr3 20739862 20740017 -138859766 + Lx2 LINE L1 6842 6996 -1 3 743 283 364 100 25 chr3 20740122 20740401 -138859382 - L2 LINE L2 -752 2667 2368 3 743 32811 26 4 0 chr3 20742693 20747304 -138852479 - L1Md_A LINE L1 0 6582 1952 3 743 40566 14 2 6 chr3 20747311 20753455 -138846328 - L1Md_A LINE L1 -2 6580 468 3 743 4066 199 33 44 chr3 20754099 20755008 -138844775 + RMER13B LTR ERVK 1 899 -9 3 743 405 0 0 0 chr3 20755026 20755071 -138844712 + (CA)n Simple_repeat Simple_repeat 2 46 0 3 743 4127 56 4 0 chr3 20755839 20756340 -138843443 - RLTR1C LTR ERV1 0 503 1 3 743 208 70 47 0 chr3 20756493 20756536 -138843247 + (TTTG)n Simple_repeat Simple_repeat 2 46 0 3 743 2984 135 12 10 chr3 20756841 20757335 -138842448 - Lx2 LINE L1 -4 6993 6499 3 743 344 306 18 9 chr3 20757909 20758021 -138841762 + MIRb SINE MIR 111 223 -45 3 743 1221 303 61 22 chr3 20758195 20758816 -138840967 - MER45R DNA Tip100 -3 1578 934 3 743 2354 258 201 29 chr3 20758816 20759659 -138840124 - RMER1B Other Other -18 1048 61 3 743 233 254 0 16 chr3 20759701 20759765 -138840018 - MER45R DNA Tip100 -619 962 900 3 743 6905 206 37 26 chr3 20759776 20760968 -138838815 - Lx5 LINE L1 0 7050 5831 3 743 3887 149 41 19 chr3 20760968 20761647 -138838136 - Lx2 LINE L1 0 6997 6304 3 743 6905 164 43 29 chr3 20761647 20762599 -138837184 - Lx5 LINE L1 -44 5833 4854 3 743 805 318 100 9 chr3 20763843 20764262 -138835521 + RMER5 LTR ERV1 41 497 -37 3 743 360 0 0 0 chr3 20764616 20764656 -138835127 + (TG)n Simple_repeat Simple_repeat 2 41 0 3 743 1150 79 127 0 chr3 20764720 20764885 -138834898 - B2_Mm2 SINE B2 -9 186 1 3 743 280 249 7 2 chr3 20764976 20765049 -138834734 - PB1D10 SINE Alu -34 86 12 3 743 3417 150 58 26 chr3 20765363 20765967 -138833816 + Lx4A LINE L1 6435 7057 -1 3 743 208 85 20 60 chr3 20765967 20766017 -138833766 + A-rich Low_complexity Low_complexity 1 48 0 3 743 7440 159 31 6 chr3 20766361 20767647 -138832136 - Lx2B LINE L1 -2 6998 5681 3 743 219 114 0 0 chr3 20767912 20767947 -138831836 + (TA)n Simple_repeat Simple_repeat 1 35 0 3 743 21 36 0 0 chr3 20769206 20769234 -138830549 + AT_rich Low_complexity Low_complexity 1 28 0 3 743 323 364 35 46 chr3 20769433 20769606 -138830177 + MIRb SINE MIR 54 224 -44 3 743 779 215 28 95 chr3 20769820 20770031 -138829752 + B3A SINE B2 2 198 0 3 743 257 382 107 0 chr3 20770217 20770348 -138829435 + RSINE1 SINE B4 3 147 -18 3 743 264 91 0 0 chr3 20771139 20771183 -138828600 + (A)n Simple_repeat Simple_repeat 1 44 0 3 743 486 0 0 0 chr3 20771353 20771407 -138828376 + (TAGA)n Simple_repeat Simple_repeat 1 54 0 3 743 2012 229 47 38 chr3 20771487 20772019 -138827764 - RMER19C LTR ERVK 0 737 177 3 743 6974 136 35 43 chr3 20772020 20773418 -138826365 - MurERV4_19-int LTR ERVK -11 5769 4231 3 743 306 348 50 25 chr3 20773567 20773726 -138826057 - Lx8 LINE L1 -264 7209 7047 3 743 21 0 0 0 chr3 20773759 20773780 -138826003 + AT_rich Low_complexity Low_complexity 1 21 0 3 743 257 0 30 0 chr3 20775126 20775159 -138824624 + (CAAAAA)n Simple_repeat Simple_repeat 2 35 0 3 743 510 362 45 45 chr3 20775196 20775572 -138824211 - L1MC2 LINE L1 -44 6718 6343 3 743 1271 246 77 26 chr3 20775572 20775923 -138823860 + MTEb LTR MaLR 1 369 -10 3 743 633 299 99 28 chr3 20776141 20777030 -138822753 - L1MC2 LINE L1 -641 6121 5168 3 743 486 372 0 0 chr3 20777342 20777525 -138822258 + B3A SINE B2 1 183 -15 3 743 1002 25 0 0 chr3 20777533 20777654 -138822129 - L1Md_T LINE L1 -429 5454 5334 3 743 1234 35 0 0 chr3 20777650 20777795 -138821988 + L1Md_T LINE L1 5442 5586 -297 3 743 8415 30 3 0 chr3 20777795 20778787 -138820996 + L1Md_T LINE L1 5587 6581 -1 3 743 391 304 72 75 chr3 20778827 20779345 -138820438 - L1MC2 LINE L1 -1704 4860 4316 3 743 816 40 0 0 chr3 20780374 20780474 -138819309 + (CAAAC)n Simple_repeat Simple_repeat 5 104 0 3 743 518 302 139 31 chr3 20780960 20781911 -138817872 - L1MC2 LINE L1 -5125 1626 480 3 743 3331 75 0 0 chr3 20782120 20782558 -138817225 - L1_Mm LINE L1 -659 5224 4787 3 743 3789 67 12 2 chr3 20782558 20783049 -138816734 + L1_Mm LINE L1 5295 5790 -93 3 743 477 163 11 21 chr3 20783049 20783143 -138816640 + MMETn-int LTR ERVK 4412 4504 -340 3 743 460 259 185 8 chr3 20783143 20783381 -138816402 + RLTR13D6 LTR ERVK 158 437 -465 3 743 2032 168 13 43 chr3 20783401 20783794 -138815989 - Lx4B LINE L1 -246 6812 6432 3 743 8207 43 5 0 chr3 20783890 20785122 -138814661 - L1Md_F2 LINE L1 -2 6580 5344 3 743 242 322 38 76 chr3 20785122 20785253 -138814530 - MER90 LTR ERV1 -446 129 4 3 743 236 354 72 16 chr3 20785257 20785564 -138814219 - L1MEg LINE L1 -3321 2825 2502 3 743 21 0 0 0 chr3 20785576 20785597 -138814186 + AT_rich Low_complexity Low_complexity 1 21 0 3 743 22 56 0 0 chr3 20786102 20786138 -138813645 + AT_rich Low_complexity Low_complexity 1 36 0 3 743 1514 204 70 0 chr3 20786171 20786528 -138813255 - ORR1C2 LTR MaLR 0 384 3 3 743 691 191 102 26 chr3 20786531 20786742 -138813041 - ORR1C2-int LTR MaLR -1 1508 1319 3 743 3216 88 14 2 chr3 20786742 20787300 -138812483 - Lx LINE L1 -629 6025 5464 3 743 3417 141 30 36 chr3 20787300 20787876 -138811907 + Lx LINE L1 6079 6650 -4 3 743 2115 179 114 13 chr3 20787879 20788348 -138811435 - ORR1C2-int LTR MaLR -172 1337 723 3 743 383 272 22 0 chr3 20788355 20788447 -138811336 - ORR1C2 LTR MaLR -278 96 3 3 743 233 263 125 28 chr3 20788725 20788901 -138810882 - L1MEg LINE L1 -4873 1369 1177 3 743 686 12 12 0 chr3 20789845 20789928 -138809855 + (TC)n Simple_repeat Simple_repeat 2 85 0 3 743 261 0 0 0 chr3 20789928 20789956 -138809827 + (TG)n Simple_repeat Simple_repeat 2 30 0 3 743 357 358 7 13 chr3 20789963 20790113 -138809670 - RSINE1 SINE B4 -15 150 2 3 743 239 300 98 22 chr3 20790178 20790270 -138809513 - B3 SINE B2 0 216 118 3 743 765 266 103 47 chr3 20791063 20791276 -138808507 + B4 SINE B4 68 292 0 3 743 324 0 0 0 chr3 20791298 20791334 -138808449 + (TC)n Simple_repeat Simple_repeat 1 36 0 3 743 306 0 0 0 chr3 20791334 20791367 -138808416 + (CA)n Simple_repeat Simple_repeat 1 34 0 3 743 432 0 0 0 chr3 20791367 20791414 -138808369 + (GA)n Simple_repeat Simple_repeat 2 49 0 3 743 207 209 0 0 chr3 20793164 20793207 -138806576 + T-rich Low_complexity Low_complexity 1 43 0 3 743 186 398 64 40 chr3 20793292 20793465 -138806318 - L2 LINE L2 -376 3043 2867 3 743 762 267 143 7 chr3 20794452 20794731 -138805052 - MTE2a LTR MaLR -35 344 28 3 743 726 291 117 7 chr3 20794757 20795048 -138804735 + Arthur1B DNA Tip100 671 993 -232 3 743 216 170 0 0 chr3 20796155 20796208 -138803575 + T-rich Low_complexity Low_complexity 1 53 0 3 743 38618 37 2 7 chr3 20796211 20802387 -138797396 - L1Md_T LINE L1 0 6582 440 3 743 189 0 0 0 chr3 20802407 20802428 -138797355 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 3 743 2450 167 7 46 chr3 20802736 20803373 -138796410 + L1_Mur2 LINE L1 1044 1665 -4212 3 743 1063 66 0 14 chr3 20803373 20803511 -138796272 + B1_Mus1 SINE Alu 3 138 -10 3 743 236 30 30 0 chr3 20803511 20803544 -138796239 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 3 743 2450 166 8 60 chr3 20803544 20803649 -138796134 + L1_Mur2 LINE L1 1666 1756 -4121 3 743 6115 193 70 16 chr3 20803647 20805003 -138794780 + Lx4B LINE L1 5628 7056 -2 3 743 396 59 0 0 chr3 20805073 20805124 -138794659 + (T)n Simple_repeat Simple_repeat 1 51 0 3 743 844 191 0 7 chr3 20805124 20805272 -138794511 - B1_Mus2 SINE Alu 0 147 1 3 743 1782 152 38 6 chr3 20805439 20805758 -138794025 - ORR1A4 LTR MaLR 0 329 1 3 743 454 364 45 37 chr3 20807345 20807451 -138792332 - B4A SINE B4 -15 277 177 3 743 188 0 74 0 chr3 20807451 20807478 -138792305 + (TTTTG)n Simple_repeat Simple_repeat 3 31 0 4 743 454 364 45 37 chr3 20807478 20807639 -138792144 - B4A SINE B4 -116 176 8 3 743 5501 182 57 21 chr3 20807733 20807847 -138791936 - L1_Mur2 LINE L1 -931 4949 4834 4 743 495 0 0 0 chr3 20807847 20807902 -138791881 + (TG)n Simple_repeat Simple_repeat 2 56 0 4 743 5501 182 57 21 chr3 20807902 20809028 -138790755 - L1_Mur2 LINE L1 -1047 4833 3665 4 743 3188 212 20 16 chr3 20809028 20809770 -138790013 - L1_Mur2 LINE L1 -3438 2439 1695 4 743 36434 54 2 2 chr3 20809765 20814366 -138785417 - L1Md_F2 LINE L1 -3 6579 1981 4 743 2632 75 3 0 chr3 20814366 20814697 -138785086 - IAPEY3_LTR LTR ERVK 0 332 1 4 743 36434 123 105 18 chr3 20814697 20816188 -138783595 - L1Md_F2 LINE L1 -3903 1980 355 4 743 2234 207 26 34 chr3 20816188 20817122 -138782661 - L1_Mur2 LINE L1 -4145 1732 811 4 743 23 86 0 0 chr3 20817555 20817613 -138782170 + AT_rich Low_complexity Low_complexity 1 58 0 4 743 1348 86 30 5 chr3 20817613 20817812 -138781971 - L1_Mus2 LINE L1 0 6566 6363 4 743 5080 195 39 78 chr3 20817812 20818778 -138781005 - L1_Mur3 LINE L1 -2894 2986 2066 4 743 753 71 0 0 chr3 20818778 20818891 -138780892 + (TC)n Simple_repeat Simple_repeat 2 114 0 4 743 5080 195 39 78 chr3 20818891 20819060 -138780723 - L1_Mur3 LINE L1 -3815 2065 1907 4 743 1084 75 0 33 chr3 20819060 20819211 -138780572 - B1_Mus1 SINE Alu 0 148 3 4 743 5080 195 39 78 chr3 20819211 20819494 -138780289 - L1_Mur3 LINE L1 -3974 1906 1621 4 743 1083 221 169 16 chr3 20820133 20820819 -138778964 - L1_Mur3 LINE L1 -4263 1617 875 4 743 343 255 93 31 chr3 20821205 20821399 -138778384 - L1_Mur2 LINE L1 -5783 929 724 4 743 590 322 81 38 chr3 20823196 20823432 -138776351 - B4 SINE B4 -5 287 42 4 743 1015 180 14 120 chr3 20824925 20825200 -138774583 + RMER19C LTR ERVK 1 245 -492 4 743 332 306 26 65 chr3 20825278 20825432 -138774351 - ORR1E LTR MaLR -210 149 2 4 743 314 281 12 0 chr3 20825664 20825746 -138774037 + ID4_ SINE ID 1 83 0 4 743 530 325 112 31 chr3 20826099 20826556 -138773227 + Charlie2a DNA MER1_type 1639 2132 -729 4 743 419 0 20 0 chr3 20827038 20827089 -138772694 + (CA)n Simple_repeat Simple_repeat 2 53 0 4 743 533 216 10 0 chr3 20827107 20827209 -138772574 + B1_Mur4 SINE Alu 2 104 -46 4 743 373 246 7 78 chr3 20827214 20827368 -138772415 - L1_Mur2 LINE L1 -2990 2887 2745 4 743 6127 218 26 5 chr3 20827359 20828736 -138771047 + Lx5 LINE L1 4262 5667 -210 4 743 615 339 93 3 chr3 20828748 20829038 -138770745 + Lx5 LINE L1 6041 6356 -694 4 743 1379 313 52 39 chr3 20829050 20829589 -138770194 + Lx5 LINE L1 6487 7032 -18 4 743 704 43 0 11 chr3 20830024 20830117 -138769666 + (TTCC)n Simple_repeat Simple_repeat 1 92 0 4 743 24 0 0 0 chr3 20830666 20830690 -138769093 + AT_rich Low_complexity Low_complexity 1 24 0 4 743 422 267 0 0 chr3 20830746 20830832 -138768951 - MTD LTR MaLR -96 323 238 4 743 32139 63 13 3 chr3 20830841 20836173 -138763610 + L1Md_F3 LINE L1 220 5589 -297 4 743 7940 44 14 0 chr3 20836173 20837157 -138762626 + L1Md_F3 LINE L1 5590 6587 0 4 743 3450 116 53 6 chr3 20837168 20837715 -138762068 - Lx3_Mus LINE L1 -850 6159 5587 4 743 5377 135 16 15 chr3 20837736 20838595 -138761188 + Lx3A LINE L1 6122 6981 0 4 743 562 154 27 0 chr3 20838879 20838989 -138760794 + RMER1B Other Other 945 1057 -9 4 743 313 304 153 15 chr3 20839750 20839887 -138759896 + HAL1-3A_ME LINE L1 2284 2439 -419 4 743 394 307 26 7 chr3 20839887 20840038 -138759745 + GA-rich Low_complexity Low_complexity 2 155 0 4 743 369 0 0 0 chr3 20840320 20840361 -138759422 + (TTA)n Simple_repeat Simple_repeat 1 41 0 4 92 463 268 21 14 chr3 20840364 20840504 -138759279 - Lx7 LINE L1 -435 7261 7121 4 744 4832 200 49 13 chr3 20840507 20842238 -138757545 - Lx7 LINE L1 -1102 6594 4795 4 744 3838 71 1 16 chr3 20843510 20844059 -138755724 - L1_Mus2 LINE L1 -659 5907 5367 4 744 4579 75 55 14 chr3 20844059 20844712 -138755071 + L1_Mus2 LINE L1 5887 6566 0 4 744 225 0 0 0 chr3 20844836 20844861 -138754922 + (GGAAA)n Simple_repeat Simple_repeat 4 28 0 4 744 363 345 129 45 chr3 20845109 20845373 -138754410 - B4A SINE B4 -4 288 3 4 744 22 0 0 0 chr3 20846323 20846345 -138753438 + AT_rich Low_complexity Low_complexity 1 22 0 4 744 769 332 47 85 chr3 20846382 20846810 -138752973 + MTD LTR MaLR 7 404 -15 4 744 362 336 67 49 chr3 20846847 20847132 -138752651 - L1M2 LINE L1 -1096 5047 4758 4 744 7577 69 7 3 chr3 20847950 20849292 -138750491 - L1Md_F2 LINE L1 0 6582 5359 4 744 5433 81 1 1 chr3 20849290 20850034 -138749749 - L1Md_F2 LINE L1 -1002 4881 4138 4 744 1137 197 12 4 chr3 20850043 20850288 -138749495 + L1_Mur2 LINE L1 544 790 -5922 4 744 5353 180 51 27 chr3 20850306 20852111 -138747672 + L1VL4 LINE L1 6 1844 -1715 4 744 15582 120 9 3 chr3 20852109 20854673 -138745110 + L1_Mus3 LINE L1 3396 5971 -667 4 744 275 54 0 0 chr3 20854673 20854710 -138745073 - MusHAL1 LINE L1 -2049 663 627 4 744 1018 110 0 6 chr3 20854710 20854866 -138744917 + L1_Mus1 LINE L1 6413 6567 0 4 744 4463 117 13 3 chr3 20854876 20855546 -138744237 + L1_Mus3 LINE L1 5956 6632 -6 4 744 549 28 14 0 chr3 20855551 20855622 -138744161 + B1_Mus2 SINE Alu 76 147 0 4 744 273 57 57 0 chr3 20855651 20855704 -138744079 + L1_Mur2 LINE L1 710 765 -5947 4 744 1634 199 12 9 chr3 20855713 20856032 -138743751 + ORR1A4 LTR MaLR 10 329 0 4 744 8965 170 39 45 chr3 20856034 20856868 -138742915 + L1_Mur2 LINE L1 1203 2054 -3823 4 744 186 103 0 0 chr3 20856868 20856897 -138742886 + (CA)n Simple_repeat Simple_repeat 1 29 0 4 744 8965 170 39 45 chr3 20856897 20857257 -138742526 + L1_Mur2 LINE L1 2055 2431 -3446 4 744 1093 95 0 0 chr3 20857257 20857404 -138742379 - B1_Mus1 SINE Alu 0 148 2 4 744 8965 170 39 45 chr3 20857404 20858242 -138741541 + L1_Mur2 LINE L1 2432 3224 -2653 4 744 2402 236 8 4 chr3 20858269 20858770 -138741013 + Lx5 LINE L1 6544 7046 -4 4 744 550 287 66 66 chr3 20858786 20858969 -138740814 + MTD LTR MaLR 197 379 -40 4 744 8717 169 22 112 chr3 20858991 20859382 -138740401 + L1_Mm LINE L1 1309 1694 -4189 4 744 426 39 0 0 chr3 20859382 20859434 -138740349 + (TA)n Simple_repeat Simple_repeat 2 53 0 4 744 495 0 0 0 chr3 20859441 20859496 -138740287 + (GA)n Simple_repeat Simple_repeat 2 56 0 4 744 8717 169 22 112 chr3 20859496 20860056 -138739727 + L1_Mm LINE L1 1695 2038 -3845 4 744 5170 53 6 1 chr3 20860056 20860711 -138739072 + L1Md_F2 LINE L1 5925 6582 0 4 744 8717 169 22 112 chr3 20860711 20861923 -138737860 + L1_Mm LINE L1 2039 3285 -2598 4 744 207 0 0 0 chr3 20861993 20862016 -138737767 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 4 744 1352 164 8 17 chr3 20862025 20862260 -138737523 + ORR1A3 LTR MaLR 94 326 0 4 744 291 331 99 0 chr3 20863388 20863530 -138736253 - MLT2D LTR ERVL -258 156 1 4 744 791 289 89 19 chr3 20863598 20863869 -138735914 - B4A SINE B4 -2 290 1 4 744 263 401 26 7 chr3 20864508 20864661 -138735122 - MIRb SINE MIR -9 259 104 4 744 21 0 0 0 chr3 20865199 20865220 -138734563 + AT_rich Low_complexity Low_complexity 1 21 0 4 744 198 174 0 0 chr3 20865283 20865329 -138734454 + A-rich Low_complexity Low_complexity 6 51 0 4 744 182 0 0 97 chr3 20866003 20866034 -138733749 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 4 744 12489 61 2 0 chr3 20866894 20869212 -138730571 - L1Md_F2 LINE L1 -1 6581 4261 4 744 7028 95 1 12 chr3 20869214 20870635 -138729148 + L1Md_F LINE L1 244 1648 -4235 4 744 201 188 0 55 chr3 20870915 20870988 -138728795 + A-rich Low_complexity Low_complexity 4 72 0 4 744 208 95 48 0 chr3 20870933 20870975 -138728808 + (CAA)n Simple_repeat Simple_repeat 2 45 0 4 744 464 247 173 17 chr3 20872183 20872356 -138727427 + B3 SINE B2 17 216 0 4 744 378 0 0 0 chr3 20872735 20872777 -138727006 + (TG)n Simple_repeat Simple_repeat 2 43 0 4 744 22 70 0 0 chr3 20873565 20873608 -138726175 + AT_rich Low_complexity Low_complexity 1 43 0 4 744 221 189 40 13 chr3 20873672 20873747 -138726036 + (TA)n Simple_repeat Simple_repeat 2 78 0 4 744 594 0 0 0 chr3 20873747 20873813 -138725970 + (CATATA)n Simple_repeat Simple_repeat 2 67 0 4 744 378 0 0 0 chr3 20873813 20873855 -138725928 + (TG)n Simple_repeat Simple_repeat 2 43 0 4 744 524 261 365 11 chr3 20873910 20874054 -138725729 - ORR1E LTR MaLR -2 368 175 4 744 540 0 0 0 chr3 20874054 20874114 -138725669 + (GA)n Simple_repeat Simple_repeat 1 60 0 4 744 524 332 19 24 chr3 20874114 20874287 -138725496 - ORR1E LTR MaLR -185 174 2 4 744 741 293 210 21 chr3 20874551 20874970 -138724813 + MLT2B1 LTR ERVL 1 498 -22 4 744 2198 267 70 26 chr3 20874970 20875596 -138724187 + Lx6 LINE L1 6806 7459 -1 4 744 245 172 105 31 chr3 20875627 20875706 -138724077 - MT2B LTR ERVL -449 84 1 4 744 294 29 0 0 chr3 20875879 20875914 -138723869 + (CA)n Simple_repeat Simple_repeat 2 36 0 4 744 342 0 0 0 chr3 20876389 20876427 -138723356 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 4 744 1123 49 0 14 chr3 20876427 20876573 -138723210 - B1_Mus2 SINE Alu -3 144 1 4 744 33 0 0 0 chr3 20876573 20876606 -138723177 + AT_rich Low_complexity Low_complexity 1 33 0 4 744 401 360 28 35 chr3 20876629 20876770 -138723013 - RSINE1 SINE B4 -22 143 4 4 744 2311 184 58 21 chr3 20877976 20878062 -138721721 - RLTR20C LTR ERVK 0 534 446 4 744 201 39 0 0 chr3 20878062 20878088 -138721695 + (CA)n Simple_repeat Simple_repeat 2 27 0 4 744 2311 184 58 21 chr3 20878088 20878516 -138721267 - RLTR20C LTR ERVK -89 445 3 4 744 212 167 0 0 chr3 20878531 20878567 -138721216 + CT-rich Low_complexity Low_complexity 2 37 0 4 744 546 320 56 6 chr3 20878699 20878928 -138720855 - MIRb SINE MIR 0 268 12 4 744 638 305 148 0 chr3 20879211 20879434 -138720349 - B4A SINE B4 -32 260 5 4 744 1122 278 57 15 chr3 20880245 20880578 -138719205 - MTEa LTR MaLR 0 379 33 4 744 378 0 0 0 chr3 20882023 20882065 -138717718 + (TTTTA)n Simple_repeat Simple_repeat 2 43 0 4 744 1246 171 123 24 chr3 20883439 20883828 -138715955 - RMER17C LTR ERVK -519 439 16 4 744 453 19 0 0 chr3 20883843 20883897 -138715886 + (TG)n Simple_repeat Simple_repeat 2 55 0 4 744 796 327 52 30 chr3 20883912 20884183 -138715600 - B4 SINE B4 -14 278 2 4 744 249 220 0 0 chr3 20888392 20888442 -138711341 + L1VL2 LINE L1 519 568 -5767 4 744 16628 179 58 145 chr3 20888578 20890850 -138708933 + Lx2A1 LINE L1 742 3100 -2777 4 744 1117 62 14 7 chr3 20890850 20890997 -138708786 + B1_Mus1 SINE Alu 1 148 0 4 744 16628 179 33 170 chr3 20890997 20891420 -138708363 + Lx2A1 LINE L1 3101 3483 -2394 4 744 207 0 0 0 chr3 20891420 20891443 -138708340 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 4 744 16628 179 33 170 chr3 20891443 20891812 -138707971 + Lx2A1 LINE L1 3484 3826 -2051 4 744 3779 152 77 20 chr3 20891812 20892523 -138707260 - RLTR13C1 LTR ERVK -231 752 1 4 744 16628 179 33 170 chr3 20892523 20893394 -138706389 + Lx2A1 LINE L1 3827 4637 -1240 4 744 225 0 0 0 chr3 20893394 20893419 -138706364 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 4 744 16628 157 36 121 chr3 20893419 20894637 -138705146 + Lx2A1 LINE L1 4638 5961 -1047 4 744 535 254 48 16 chr3 20895034 20895158 -138704625 - ETnERV2-int LTR ERVK -209 7197 7070 4 744 5288 191 4 49 chr3 20895158 20896238 -138703545 + Lx2 LINE L1 5959 6989 -8 5 744 1097 290 50 86 chr3 20896334 20896927 -138702856 - Lx6 LINE L1 -30 7430 6482 5 744 1631 270 74 12 chr3 20896929 20897480 -138702303 - Lx6 LINE L1 -689 6361 5748 5 744 5905 205 24 3 chr3 20897457 20897641 -138702142 + L1_Mur2 LINE L1 3666 3857 -2020 5 744 471 18 0 0 chr3 20897641 20897697 -138702086 + (CA)n Simple_repeat Simple_repeat 2 57 0 5 744 5905 205 24 3 chr3 20897697 20898763 -138701020 + L1_Mur2 LINE L1 3858 4941 -936 5 744 3236 99 21 0 chr3 20899531 20900053 -138699730 - L1_Mus4 LINE L1 -729 5907 5375 5 744 2099 138 15 80 chr3 20900051 20900349 -138699434 + L1_Mm LINE L1 4230 4532 -1351 5 744 1127 97 80 0 chr3 20900349 20900525 -138699258 + L1Md_F2 LINE L1 6388 6577 -5 5 744 2099 138 15 80 chr3 20900525 20900637 -138699146 + L1_Mm LINE L1 4533 4613 -1270 5 744 38284 51 13 3 chr3 20900639 20906896 -138692887 - L1Md_T LINE L1 0 6582 307 5 744 2452 161 25 0 chr3 20906896 20907342 -138692441 + L1_Mm LINE L1 4608 5064 -819 5 744 781 280 9 19 chr3 20908506 20908717 -138691066 - B3 SINE B2 -6 210 2 5 744 218 304 245 0 chr3 20909818 20909920 -138689863 + MIR SINE MIR 73 199 -63 5 744 1093 89 0 7 chr3 20910417 20910564 -138689219 - B1_Mus2 SINE Alu 0 147 2 5 744 291 295 25 18 chr3 20910806 20910912 -138688871 + PB1D10 SINE Alu 10 119 -1 5 744 423 0 0 0 chr3 20910937 20910984 -138688799 + (GTTTG)n Simple_repeat Simple_repeat 2 48 0 5 744 1318 85 14 0 chr3 20911099 20911294 -138688489 + Lx LINE L1 5601 5830 -514 5 744 4216 134 18 13 chr3 20911295 20911969 -138687814 + Lx LINE L1 5972 6648 -6 5 744 2149 114 12 38 chr3 20912476 20912822 -138686961 - IAPLTR1a_Mm LTR ERVK 0 337 1 5 744 6376 32 4 19 chr3 20912824 20913607 -138686176 - IAPEz-int LTR ERVK -2 6479 5709 5 744 3086 22 0 0 chr3 20913598 20913955 -138685828 - IAPEz-int LTR ERVK -2124 4357 4001 5 744 20867 54 39 19 chr3 20913953 20916667 -138683116 - IAPEz-int LTR ERVK -3707 2774 8 5 744 2149 114 12 38 chr3 20916667 20917013 -138682770 - IAPLTR1a_Mm LTR ERVK 0 337 1 5 744 362 235 10 0 chr3 20917269 20917371 -138682412 + (TATATG)n Simple_repeat Simple_repeat 6 108 0 5 744 398 331 16 47 chr3 20917375 20917502 -138682281 - ORR1E LTR MaLR -7 372 250 5 744 2020 178 148 2 chr3 20917538 20917977 -138681806 - RLTR12B LTR ERVK -25 503 1 5 744 760 231 77 29 chr3 20918281 20918490 -138681293 - ORR1E LTR MaLR -111 248 30 5 744 525 261 78 0 chr3 20918609 20918762 -138681021 + MER2 DNA MER2_type 131 295 -50 5 744 24 32 0 0 chr3 20920395 20920426 -138679357 + AT_rich Low_complexity Low_complexity 1 31 0 5 744 26 82 0 0 chr3 20920502 20920563 -138679220 + AT_rich Low_complexity Low_complexity 1 61 0 5 744 180 0 0 0 chr3 20920670 20920690 -138679093 + (TTG)n Simple_repeat Simple_repeat 2 21 0 5 744 324 0 0 0 chr3 20920691 20920727 -138679056 + (TGG)n Simple_repeat Simple_repeat 3 38 0 5 744 608 283 49 8 chr3 20920745 20920991 -138678792 - Lx9 LINE L1 -155 7489 7234 5 744 1723 291 72 35 chr3 20921015 20921663 -138678120 - Lx9 LINE L1 -474 7170 6499 5 744 1586 251 92 79 chr3 20921659 20922055 -138677728 + Lx9 LINE L1 5092 5514 -333 5 744 1759 142 26 70 chr3 20922055 20922397 -138677386 - ORR1A4 LTR MaLR 0 329 3 5 744 1586 284 99 77 chr3 20922397 20923354 -138676429 + Lx9 LINE L1 5515 6495 -1149 5 744 27 0 0 0 chr3 20924043 20924070 -138675713 + AT_rich Low_complexity Low_complexity 1 27 0 5 744 186 43 0 0 chr3 20924582 20924605 -138675178 + (T)n Simple_repeat Simple_repeat 1 23 0 5 744 200 59 29 0 chr3 20925132 20925166 -138674617 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 5 744 396 0 0 0 chr3 20925600 20925644 -138674139 + (GA)n Simple_repeat Simple_repeat 1 44 0 5 744 1679 223 99 5 chr3 20925922 20926305 -138673478 + MTD LTR MaLR 1 419 0 5 744 463 329 121 85 chr3 20926350 20926632 -138673151 - B4 SINE B4 0 292 1 5 744 416 339 101 87 chr3 20927019 20927465 -138672318 + MLT1D LTR MaLR 5 456 -49 5 744 23 33 0 0 chr3 20928359 20928389 -138671394 + AT_rich Low_complexity Low_complexity 1 30 0 5 744 1076 248 62 106 chr3 20928393 20928781 -138671002 + MTE2a LTR MaLR 4 374 -5 5 744 214 188 88 59 chr3 20929306 20929374 -138670409 + B3 SINE B2 2 71 -145 5 744 464 356 75 33 chr3 20929920 20930225 -138669558 + L1MD LINE L1 4890 5207 -939 5 744 288 258 9 76 chr3 20930227 20930332 -138669451 - B4A SINE B4 -151 141 44 5 744 236 188 90 45 chr3 20930415 20930504 -138669279 + L1MD1 LINE L1 6150 6242 0 5 744 289 299 0 0 chr3 20930530 20930597 -138669186 + RSINE1 SINE B4 44 110 -55 5 744 1191 50 0 0 chr3 20930618 20930777 -138669006 + (CA)n Simple_repeat Simple_repeat 2 160 0 5 744 210 143 0 0 chr3 20931253 20931288 -138668495 + (TA)n Simple_repeat Simple_repeat 2 36 0 5 744 526 298 110 85 chr3 20931301 20931583 -138668200 - B4A SINE B4 -1 291 3 5 744 180 0 0 0 chr3 20932455 20932475 -138667308 + (TA)n Simple_repeat Simple_repeat 2 21 0 5 744 572 308 27 7 chr3 20934634 20934781 -138665002 + RSINE1 SINE B4 3 152 -13 5 744 803 134 7 0 chr3 20935645 20935787 -138663996 + (TTCC)n Simple_repeat Simple_repeat 1 143 0 5 744 303 283 0 34 chr3 20935790 20935907 -138663876 - BC1_Mm scRNA scRNA -18 134 22 5 744 199 122 0 39 chr3 20936105 20936156 -138663627 + A-rich Low_complexity Low_complexity 2 50 0 5 744 306 123 0 0 chr3 20936189 20936246 -138663537 + (GA)n Simple_repeat Simple_repeat 2 58 0 5 744 1969 309 73 61 chr3 20936260 20936379 -138663404 - Lx7 LINE L1 -396 7300 7202 5 744 3858 77 29 0 chr3 20936379 20936899 -138662884 - L1_Mus1 LINE L1 0 6567 6033 5 744 1969 309 73 61 chr3 20936899 20937740 -138662043 - Lx7 LINE L1 -495 7201 6329 5 744 279 286 14 0 chr3 20937899 20937969 -138661814 - ID4 SINE ID -10 73 3 5 744 26 64 0 0 chr3 20938494 20938541 -138661242 + AT_rich Low_complexity Low_complexity 1 47 0 5 744 409 336 34 0 chr3 20938584 20938703 -138661080 + RSINE1 SINE B4 3 125 -40 5 744 1255 291 55 73 chr3 20938747 20939278 -138660505 - Lx8 LINE L1 -200 7273 6753 5 744 780 224 194 6 chr3 20941027 20941207 -138658576 + B3 SINE B2 1 214 -2 5 744 206 347 0 62 chr3 20941554 20941634 -138658149 - MER5A DNA MER1_type -54 135 61 5 744 1324 277 78 60 chr3 20941660 20942389 -138657394 - L1MA6 LINE L1 -6 6294 5553 5 744 472 296 95 0 chr3 20942712 20942901 -138656882 + B3 SINE B2 4 210 -6 5 744 796 296 60 19 chr3 20943029 20943442 -138656341 + L1MA5A LINE L1 5460 5889 -408 5 744 371 285 53 8 chr3 20943987 20944118 -138655665 + B1F2 SINE Alu 5 141 -8 5 744 687 25 0 0 chr3 20944119 20944200 -138655583 + (TA)n Simple_repeat Simple_repeat 1 81 0 5 744 340 130 29 0 chr3 20944504 20944573 -138655210 + A-rich Low_complexity Low_complexity 2 72 0 5 744 545 293 43 25 chr3 20945376 20945537 -138654246 - B4A SINE B4 -128 164 1 5 744 876 310 149 6 chr3 20945694 20946044 -138653739 + MTD LTR MaLR 18 417 -2 5 744 1125 38 0 0 chr3 20946301 20946432 -138653351 - L1_Mm LINE L1 -184 5699 5569 5 744 468 323 94 31 chr3 20946432 20946656 -138653127 - B4 SINE B4 -49 243 6 5 744 4904 154 75 26 chr3 20946697 20948369 -138651414 + L1_Mur1 LINE L1 207 2221 -3665 5 744 264 333 9 0 chr3 20950026 20950134 -138649649 + PB1D10 SINE Alu 2 110 -7 5 744 449 239 9 9 chr3 20950288 20950398 -138649385 + PB1D9 SINE Alu 5 114 -6 5 744 711 250 50 0 chr3 20950414 20950574 -138649209 + B3 SINE B2 37 204 -12 5 744 996 82 0 64 chr3 20950942 20951099 -138648684 + B1_Mm SINE Alu 1 147 0 5 744 216 0 0 0 chr3 20951099 20951123 -138648660 + (A)n Simple_repeat Simple_repeat 1 24 0 5 744 1049 95 0 26 chr3 20951466 20951617 -138648166 - B1_Mus1 SINE Alu 0 148 2 5 744 651 168 43 58 chr3 20952118 20952257 -138647526 + B1_Mur4 SINE Alu 6 142 -8 5 744 789 215 21 42 chr3 20952278 20952467 -138647316 - B3 SINE B2 -17 199 15 5 744 9743 92 14 14 chr3 20953375 20954856 -138644927 + Lx3_Mus LINE L1 2208 3688 -2198 5 744 6760 101 1 4 chr3 20954848 20956101 -138643682 - L1Md_F2 LINE L1 -7 6575 5328 5 744 34201 85 6 7 chr3 20956102 20962168 -138637615 - L1Md_F2 LINE L1 -12 6570 514 5 744 6431 98 15 2 chr3 20962166 20963115 -138636668 - L1_Mm LINE L1 -541 5342 4382 5 744 1589 185 85 3 chr3 20963114 20963444 -138636339 - L1Md_F LINE L1 -5880 639 283 5 744 14449 105 24 10 chr3 20963450 20966743 -138633040 + Lx3_Mus LINE L1 3677 7009 0 5 744 240 312 0 13 chr3 20966941 20967019 -138632764 + CT-rich Low_complexity Low_complexity 2 78 0 5 744 352 262 50 76 chr3 20967751 20967949 -138631834 + RMER15 LTR ERVL 350 542 -33 5 744 232 352 50 53 chr3 20968018 20968357 -138631426 + L3 LINE CR1 2733 3070 -1419 5 744 1149 294 100 28 chr3 20969281 20969959 -138629824 - L1MA9 LINE L1 -243 6069 5343 5 744 186 43 0 0 chr3 20970050 20970073 -138629710 + (TTG)n Simple_repeat Simple_repeat 2 24 0 5 744 313 285 34 68 chr3 20970080 20970257 -138629526 - L1MA9 LINE L1 -918 5222 5052 5 744 629 286 107 0 chr3 20970421 20970599 -138629184 - B3 SINE B2 -19 197 1 5 744 192 77 0 0 chr3 20971121 20971147 -138628636 + (TTTA)n Simple_repeat Simple_repeat 1 26 0 5 745 1881 222 43 12 chr3 20971612 20972032 -138627751 + RMER6D LTR ERVK 1 433 -287 5 745 1044 24 0 0 chr3 20972036 20972159 -138627624 + (GGGAGA)n Simple_repeat Simple_repeat 5 127 0 5 745 3307 199 47 14 chr3 20972664 20973496 -138626287 + Lx5 LINE L1 2288 3146 -2734 5 745 4884 236 122 24 chr3 20973496 20975687 -138624096 + Lx5 LINE L1 4301 6896 -564 5 745 1625 170 156 11 chr3 20975704 20976151 -138623632 + ORR1B1-int LTR MaLR 878 1389 -120 5 745 954 91 0 22 chr3 20976190 20976313 -138623470 + B1_Mm SINE Alu 16 138 -9 5 745 198 0 0 0 chr3 20976313 20976335 -138623448 + (CAAAC)n Simple_repeat Simple_repeat 2 23 0 5 745 954 91 0 22 chr3 20976335 20976346 -138623437 + B1_Mm SINE Alu 139 147 0 5 745 820 62 0 58 chr3 20976730 20976884 -138622899 + (GA)n Simple_repeat Simple_repeat 1 145 0 5 745 2411 122 61 5 chr3 20976894 20977305 -138622478 - RMER17D2 LTR ERVK -375 434 1 5 745 33 0 0 0 chr3 20977554 20977587 -138622196 + AT_rich Low_complexity Low_complexity 1 33 0 5 745 261 326 128 31 chr3 20977701 20977897 -138621886 - MIR SINE MIR -11 251 37 5 745 929 255 255 33 chr3 20977965 20978335 -138621448 - Lx8 LINE L1 -934 6539 6088 5 745 363 168 14 7 chr3 20978384 20978453 -138621330 + MTE2a LTR MaLR 3 73 -348 5 745 807 166 21 0 chr3 20978458 20978603 -138621180 + ORR1B2-int LTR MaLR 1361 1508 -1 6 745 1554 216 66 3 chr3 20978616 20978951 -138620832 + ORR1B2 LTR MaLR 4 359 -8 6 745 732 348 11 7 chr3 20979199 20979480 -138620303 - B4A SINE B4 -10 282 1 6 745 25 31 0 0 chr3 20980342 20980374 -138619409 + AT_rich Low_complexity Low_complexity 1 32 0 6 745 21 0 0 0 chr3 20982280 20982301 -138617482 + AT_rich Low_complexity Low_complexity 1 21 0 6 745 331 282 0 0 chr3 20982301 20982312 -138617471 + ID SINE ID 73 83 -141 6 745 343 269 132 19 chr3 20982312 20982418 -138617365 + PB1D7 SINE Alu 3 120 0 6 745 22 35 0 0 chr3 20983127 20983156 -138616627 + AT_rich Low_complexity Low_complexity 1 29 0 6 745 8304 150 9 13 chr3 20983446 20985381 -138614402 + L1VL4 LINE L1 400 2309 -1250 6 745 641 255 72 46 chr3 20985405 20985557 -138614226 - RSINE1 SINE B4 0 165 10 6 745 976 289 84 3 chr3 20985783 20986068 -138613715 + MTEa LTR MaLR 72 379 0 6 745 298 131 36 0 chr3 20987048 20987132 -138612651 + (CAAA)n Simple_repeat Simple_repeat 2 88 0 6 745 570 174 16 0 chr3 20987299 20987420 -138612363 - Lx9 LINE L1 -8 7636 7514 6 745 201 94 0 0 chr3 20987423 20987455 -138612328 + (TA)n Simple_repeat Simple_repeat 2 33 0 6 745 313 131 66 0 chr3 20987458 20987519 -138612264 - Lx9 LINE L1 -177 7467 7403 6 745 1111 250 186 40 chr3 20987524 20988021 -138611762 + RMER4B LTR ERVK 17 611 0 6 745 3585 237 38 1 chr3 20988021 20988815 -138610968 - Lx9 LINE L1 -233 7411 6589 6 745 435 290 76 11 chr3 20988895 20989157 -138610626 - L1M2 LINE L1 -3561 2582 2304 6 745 1267 301 47 22 chr3 20989343 20989748 -138610035 + MTD LTR MaLR 5 419 0 6 745 5394 39 1 0 chr3 20989876 20990522 -138609261 - L1Md_T LINE L1 0 6582 5936 6 745 367 169 39 0 chr3 20990630 20990707 -138609076 + L1_Mus2 LINE L1 6487 6566 0 6 745 210 275 0 0 chr3 20992623 20992692 -138607091 + (CAT)n Simple_repeat Simple_repeat 1 69 0 6 745 226 242 97 0 chr3 20992698 20992760 -138607023 + RMER15 LTR ERVL 495 562 -13 6 745 233 330 150 22 chr3 20992793 20993019 -138606764 - MLT1E1 LTR MaLR -42 638 384 6 745 391 321 48 18 chr3 20993095 20993263 -138606520 - MLT1E1 LTR MaLR -481 173 1 6 745 342 0 0 0 chr3 20993959 20993997 -138605786 + (TG)n Simple_repeat Simple_repeat 1 38 0 6 745 405 0 0 0 chr3 20994003 20994048 -138605735 + (TA)n Simple_repeat Simple_repeat 1 45 0 6 745 522 91 0 0 chr3 20994473 20994550 -138605233 + (CA)n Simple_repeat Simple_repeat 1 77 0 6 745 781 157 0 0 chr3 20994646 20994780 -138605003 + Lx2 LINE L1 6861 6994 -3 6 745 8708 111 25 7 chr3 20994784 20996300 -138603483 + Lx3A LINE L1 5430 6978 -3 6 745 25 0 0 0 chr3 20996301 20996326 -138603457 + AT_rich Low_complexity Low_complexity 1 25 0 6 745 605 14 14 0 chr3 20996799 20996873 -138602910 + (TAGA)n Simple_repeat Simple_repeat 3 77 0 6 745 415 302 50 0 chr3 20996900 20997039 -138602744 + Lx6 LINE L1 7145 7290 -170 6 745 255 93 0 0 chr3 20997045 20997088 -138602695 + (TGAA)n Simple_repeat Simple_repeat 2 44 0 6 745 318 333 24 8 chr3 20997127 20997251 -138602532 + Lx7 LINE L1 7189 7314 -382 6 745 5197 150 149 2 chr3 20998767 20999745 -138600038 - Lx2 LINE L1 -11 6986 5865 6 745 1933 46 0 0 chr3 20999753 20999990 -138599793 - L1Md_F3 LINE L1 -14 6570 6334 6 745 21725 179 17 17 chr3 21000000 21000174 -138599609 - L1VL4 LINE L1 -17 5869 5678 1 745 1014 131 0 0 chr3 21000174 21000319 -138599464 + B1_Mus1 SINE Alu 2 146 -2 2 745 21725 179 17 17 chr3 21000319 21000912 -138598871 - L1VL4 LINE L1 -209 5677 5126 1 745 5019 36 18 0 chr3 21000912 21001516 -138598267 - L1Md_F2 LINE L1 -14 6568 5954 3 745 21725 178 17 18 chr3 21001516 21005533 -138594250 - L1VL4 LINE L1 -761 5125 1100 1 745 1271 85 57 0 chr3 21005533 21005710 -138594073 - B2_Mm2 SINE B2 -8 187 1 4 745 5399 155 21 20 chr3 21005710 21006436 -138593347 - L1VL4 LINE L1 -5558 1099 357 1 745 423 38 0 0 chr3 21008289 21008342 -138591441 + (GA)n Simple_repeat Simple_repeat 2 54 0 5 745 1404 203 109 6 chr3 21008466 21008754 -138591029 + RMER20B LTR ERVK 21 330 -297 6 745 531 0 0 0 chr3 21008754 21008813 -138590970 + (GA)n Simple_repeat Simple_repeat 1 59 0 7 745 1404 238 505 21 chr3 21008813 21009008 -138590775 + RMER20B LTR ERVK 331 627 0 6 745 306 0 0 0 chr3 21009513 21009547 -138590236 + (TG)n Simple_repeat Simple_repeat 2 35 0 8 745 292 366 11 0 chr3 21009631 21009724 -138590059 - B4 SINE B4 -155 137 44 9 745 279 271 77 24 chr3 21009755 21009925 -138589858 + L1M2 LINE L1 2599 2777 -4072 1 745 28 48 0 0 chr3 21010253 21010295 -138589488 + AT_rich Low_complexity Low_complexity 1 42 0 1 745 1582 175 84 12 chr3 21010584 21010919 -138588864 - RLTR15 LTR ERVK 0 359 1 1 745 36 40 0 0 chr3 21011438 21011488 -138588295 + AT_rich Low_complexity Low_complexity 1 50 0 1 745 409 284 151 84 chr3 21011579 21011766 -138588017 + B3A SINE B2 1 201 -15 1 745 497 306 0 46 chr3 21012195 21012325 -138587458 + RSINE1 SINE B4 2 125 -40 1 745 572 271 37 8 chr3 21012331 21012465 -138587318 + RMER20B LTR ERVK 10 147 -480 1 745 1539 138 40 0 chr3 21012928 21013204 -138586579 - Lx3B LINE L1 -42 6931 6645 1 745 259 231 15 30 chr3 21014947 21015014 -138584769 + GA-rich Low_complexity Low_complexity 3 68 0 1 745 226 309 66 85 chr3 21015173 21015279 -138584504 + U6 snRNA snRNA 1 104 -3 1 745 495 267 133 27 chr3 21015365 21015658 -138584125 + L1MB2 LINE L1 5838 6161 -10 2 745 22 0 0 0 chr3 21015676 21015698 -138584085 + AT_rich Low_complexity Low_complexity 1 22 0 2 745 496 391 22 0 chr3 21015943 21016127 -138583656 + B4A SINE B4 2 189 -103 2 745 321 314 68 0 chr3 21016242 21016360 -138583423 - MIRb SINE MIR -59 209 84 2 745 392 302 9 152 chr3 21016903 21017126 -138582657 - RMER30 DNA MER1_type -2 200 10 2 745 259 419 23 11 chr3 21017556 21017730 -138582053 + LTR82A LTR ERVL 354 529 -343 2 745 193 229 81 16 chr3 21018146 21018208 -138581575 + L4 LINE RTE 1449 1514 -515 2 745 279 0 0 0 chr3 21018567 21018598 -138581185 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 2 745 321 26 0 0 chr3 21018779 21018817 -138580966 + (CAA)n Simple_repeat Simple_repeat 2 39 0 2 745 302 299 23 0 chr3 21018847 21018934 -138580849 + ORR1E LTR MaLR 271 359 0 2 745 418 316 98 57 chr3 21019427 21019762 -138580021 - MLT1A0 LTR MaLR -3 362 14 3 745 350 156 111 0 chr3 21019831 21019921 -138579862 + Lx3C LINE L1 2792 2891 -2995 3 745 372 77 0 0 chr3 21019923 21019975 -138579808 + (GAAA)n Simple_repeat Simple_repeat 3 54 0 3 745 11475 173 125 5 chr3 21019975 21021516 -138578267 + Lx3C LINE L1 2863 4673 -1204 3 745 296 111 16 0 chr3 21021516 21021579 -138578204 + (CA)n Simple_repeat Simple_repeat 2 65 0 3 745 11475 180 75 3 chr3 21021579 21023796 -138575987 + Lx3C LINE L1 4674 6974 -2 3 745 616 266 140 6 chr3 21023879 21024057 -138575726 + B3 SINE B2 9 210 -6 3 745 613 310 112 27 chr3 21024586 21024845 -138574938 + MLT1A0 LTR MaLR 85 365 0 3 745 253 296 55 27 chr3 21025074 21025147 -138574636 + ID4 SINE ID 1 75 -8 3 745 606 236 0 0 chr3 21025683 21025793 -138573990 + PB1D9 SINE Alu 6 115 -5 3 745 950 0 9 0 chr3 21025813 21025923 -138573860 + (GAGAA)n Simple_repeat Simple_repeat 4 114 0 3 745 234 311 95 13 chr3 21026486 21026717 -138573066 + L1MD LINE L1 2718 2967 -3179 3 745 373 311 11 11 chr3 21026834 21026925 -138572858 - RSINE1 SINE B4 -20 145 55 4 745 408 301 87 49 chr3 21026947 21027500 -138572283 + L1M5 LINE L1 3068 3674 -2472 4 745 270 0 0 0 chr3 21028068 21028098 -138571685 + (CAAA)n Simple_repeat Simple_repeat 1 30 0 4 745 2066 273 118 101 chr3 21028110 21029410 -138570373 + RMER12 LTR ERVK 1 1322 0 4 745 842 221 9 80 chr3 21029825 21030051 -138569732 + B3 SINE B2 1 210 -6 4 745 297 75 0 0 chr3 21030064 21030104 -138569679 + (TG)n Simple_repeat Simple_repeat 1 40 0 4 745 698 301 0 0 chr3 21030109 21030262 -138569521 - B3A SINE B2 -38 160 8 4 745 21 0 0 0 chr3 21031199 21031220 -138568563 + AT_rich Low_complexity Low_complexity 1 21 0 4 745 26 50 0 0 chr3 21031944 21031984 -138567799 + AT_rich Low_complexity Low_complexity 1 40 0 4 745 4619 97 27 33 chr3 21032922 21033922 -138565861 - L1_Mus1 LINE L1 -6 6632 5652 4 745 627 275 114 35 chr3 21033940 21034212 -138565571 - ORR1D2 LTR MaLR -31 343 51 5 745 244 125 196 0 chr3 21034333 21034389 -138565394 + RMER1B Other Other 844 910 -156 5 745 894 10 0 0 chr3 21034402 21034505 -138565278 + (GGAA)n Simple_repeat Simple_repeat 2 104 0 5 745 477 0 0 0 chr3 21034672 21034725 -138565058 + (CA)n Simple_repeat Simple_repeat 2 54 0 5 745 25974 76 97 1 chr3 21034749 21038732 -138561051 - L1Md_F2 LINE L1 0 6582 2075 5 745 414 0 0 0 chr3 21038732 21038778 -138561005 + (TTTA)n Simple_repeat Simple_repeat 3 48 0 5 745 25974 75 62 4 chr3 21038778 21040504 -138559279 - L1Md_F2 LINE L1 -3809 2074 351 5 745 521 313 25 30 chr3 21040520 21040721 -138559062 - MTD LTR MaLR -219 200 1 5 745 1102 70 7 0 chr3 21042688 21042831 -138556952 + B1_Mus1 SINE Alu 5 148 0 5 745 688 272 14 62 chr3 21042886 21043094 -138556689 + B3A SINE B2 1 198 0 5 745 417 290 48 5 chr3 21043302 21043510 -138556273 - L1M2 LINE L1 -3466 2677 2461 5 745 381 22 0 0 chr3 21043510 21043556 -138556227 + (CA)n Simple_repeat Simple_repeat 2 47 0 6 745 1183 236 49 16 chr3 21043575 21043963 -138555820 + L1M2 LINE L1 4454 4854 -1289 6 745 788 312 31 41 chr3 21044002 21044296 -138555487 - B4A SINE B4 0 292 2 6 745 1444 189 102 19 chr3 21044402 21044726 -138555057 + ORR1B1 LTR MaLR 44 394 0 6 745 354 268 67 0 chr3 21044740 21044904 -138554879 + L1M2 LINE L1 4947 5121 -1022 6 745 214 310 0 14 chr3 21044905 21044977 -138554806 + B1_Mur2 SINE Alu 79 149 0 6 745 803 273 114 20 chr3 21044983 21045333 -138554450 + L1_Mur3 LINE L1 3544 3937 -1943 6 745 1877 243 9 7 chr3 21045333 21045752 -138554031 - MTC LTR MaLR 0 421 2 6 745 803 273 114 20 chr3 21045752 21045794 -138553989 + L1_Mur3 LINE L1 3938 3973 -1907 6 745 2280 303 92 37 chr3 21045790 21046153 -138553630 + Lx8 LINE L1 5761 6135 -1338 6 745 1962 158 63 32 chr3 21046153 21046337 -138553446 + ORR1B1 LTR MaLR 1 189 -205 6 745 246 62 0 0 chr3 21046337 21046369 -138553414 + (CA)n Simple_repeat Simple_repeat 1 32 0 6 745 1962 158 63 32 chr3 21046369 21046564 -138553219 + ORR1B1 LTR MaLR 190 392 -2 6 745 2280 303 92 37 chr3 21046564 21047386 -138552397 + Lx8 LINE L1 6136 7011 -462 6 745 2033 199 31 33 chr3 21047488 21047910 -138551873 + MTC LTR MaLR 1 421 0 7 745 223 354 89 0 chr3 21048333 21048412 -138551371 + L2b LINE L2 3228 3313 -62 7 745 261 263 87 3 chr3 21048572 21048663 -138551120 + MIR SINE MIR 68 164 -104 7 745 234 287 21 21 chr3 21048869 21048965 -138550818 + CT-rich Low_complexity Low_complexity 3 98 0 7 745 571 234 161 7 chr3 21049079 21049234 -138550549 + ID_B1 SINE B4 38 216 -8 7 745 668 23 12 0 chr3 21049955 21050041 -138549742 + (GA)n Simple_repeat Simple_repeat 2 88 0 7 745 1028 192 205 0 chr3 21050110 21050339 -138549444 + ORR1B1 LTR MaLR 1 276 -118 7 745 232 338 0 0 chr3 21052436 21052510 -138547273 + LSU-rRNA_Hsa rRNA rRNA 2880 2953 -2082 7 745 481 178 0 90 chr3 21052644 21052755 -138547028 - ORR1A4 LTR MaLR -228 101 1 7 745 5448 128 11 20 chr3 21052987 21053901 -138545882 + RMER17A2 LTR ERVK 1 906 0 7 745 377 296 59 17 chr3 21054117 21054456 -138545327 + MERVK26-int LTR ERVK 4512 4827 -2092 8 745 28 0 0 0 chr3 21054540 21054568 -138545215 + AT_rich Low_complexity Low_complexity 1 28 0 8 745 283 267 120 22 chr3 21055482 21055574 -138544209 - RLTR23 LTR ERV1 -2 428 328 8 745 2228 87 51 0 chr3 21055590 21055901 -138543882 - IAPLTR2b LTR ERVK 0 327 1 8 745 5034 81 25 14 chr3 21055903 21056692 -138543091 - IAPEz-int LTR ERVK -22 6799 5653 8 745 2674 22 9 61 chr3 21056712 21057057 -138542726 - IAPLTR2b LTR ERVK 0 327 1 8 745 6111 65 12 0 chr3 21057057 21057876 -138541907 - IAPEz-int LTR ERVK 0 6481 5653 8 745 2521 70 0 3 chr3 21057871 21058214 -138541569 - IAPEz-int LTR ERVK -4781 1700 1359 8 745 3281 84 13 20 chr3 21058214 21059026 -138540757 - IAPEz-int LTR ERVK -5819 662 9 8 745 2161 97 51 0 chr3 21059027 21059338 -138540445 - IAPLTR2b LTR ERVK 0 327 1 8 745 1282 232 101 11 chr3 21059382 21059748 -138540035 + RLTR22_Mur LTR ERVK 410 808 -1040 8 745 494 214 59 17 chr3 21059796 21059915 -138539868 + RLTR22_Mur LTR ERVK 1590 1713 -135 8 745 341 328 57 21 chr3 21061040 21061180 -138538603 + MIRb SINE MIR 3 147 -121 8 745 249 57 0 0 chr3 21061208 21061243 -138538540 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 8 745 636 83 0 0 chr3 21061711 21061807 -138537976 + L1_Mus2 LINE L1 6471 6566 0 8 745 2323 110 52 82 chr3 21061871 21062276 -138537507 - RLTR9C LTR ERVK 0 393 1 8 745 478 107 0 0 chr3 21062277 21062352 -138537431 - ETnERV2-int LTR ERVK -1 7405 7331 8 745 3801 185 21 37 chr3 21062566 21064620 -138535163 - ETnERV2-int LTR ERVK -3321 4085 2356 8 745 1142 99 0 27 chr3 21065255 21065442 -138534341 - RLTR13D1 LTR ERVK -156 650 469 9 745 1506 133 163 50 chr3 21065446 21066103 -138533680 - MMETn-int LTR ERVK -4297 3109 2494 9 745 2830 218 50 106 chr3 21066117 21067387 -138532396 - MMETn-int LTR ERVK -3538 1306 108 9 745 342 176 132 0 chr3 21067424 21067515 -138532268 - MMETn-int LTR ERVK -4740 104 2 9 745 2452 78 54 86 chr3 21067517 21067923 -138531860 - RLTR9C LTR ERVK 0 393 1 9 745 256 288 54 14 chr3 21067928 21068002 -138531781 + B4A SINE B4 43 119 -173 9 745 29 60 0 0 chr3 21068935 21068985 -138530798 + AT_rich Low_complexity Low_complexity 1 50 0 9 745 313 303 18 18 chr3 21069597 21069708 -138530075 + PB1D10 SINE Alu 5 115 -2 9 745 392 0 0 20 chr3 21069826 21069875 -138529908 + (TTTC)n Simple_repeat Simple_repeat 2 49 0 9 745 1202 48 0 0 chr3 21069900 21070045 -138529738 - B1_Mus2 SINE Alu 0 147 3 9 745 240 367 22 11 chr3 21070387 21070478 -138529305 - MIR SINE MIR -162 100 9 9 745 574 320 11 60 chr3 21070825 21071008 -138528775 + ID_B1 SINE B4 43 216 -8 9 745 848 245 113 141 chr3 21071985 21072375 -138527408 - MTE2a LTR MaLR 0 379 1 9 745 275 349 0 0 chr3 21073576 21073642 -138526141 - tRNA-Ala-GCG tRNA tRNA -8 67 2 1 745 301 335 46 13 chr3 21074189 21074340 -138525443 + MamRep605 Unknown Unknown 121 276 -600 1 745 513 307 79 0 chr3 21074989 21075129 -138524654 + B4A SINE B4 1 151 -141 1 745 367 260 222 24 chr3 21075229 21075355 -138524428 + B4 SINE B4 142 292 0 1 745 245 301 0 0 chr3 21075418 21075491 -138524292 - RMER15 LTR ERVL -40 535 463 1 745 251 292 73 28 chr3 21075531 21075640 -138524143 - RMER15 LTR ERVL -459 116 3 1 745 25 65 0 0 chr3 21075877 21075923 -138523860 + AT_rich Low_complexity Low_complexity 1 46 0 1 745 21 82 0 0 chr3 21076007 21076056 -138523727 + AT_rich Low_complexity Low_complexity 1 49 0 1 745 630 232 28 32 chr3 21076893 21077142 -138522641 + L1M5 LINE L1 3741 3988 -2158 1 745 314 291 143 17 chr3 21077208 21077383 -138522400 + L1M5 LINE L1 4159 4355 -1791 1 745 504 273 86 0 chr3 21077435 21077563 -138522220 + RSINE1 SINE B4 13 151 -14 1 745 274 226 190 29 chr3 21077828 21078033 -138521750 + L1M5 LINE L1 5652 5889 -290 1 745 348 296 67 39 chr3 21078499 21078678 -138521105 - B3A SINE B2 -14 184 1 1 745 24 53 0 0 chr3 21078796 21078834 -138520949 + AT_rich Low_complexity Low_complexity 1 38 0 1 745 319 234 88 39 chr3 21078959 21079141 -138520642 - L1MEc LINE L1 -2955 3366 3176 1 745 287 231 53 42 chr3 21079751 21079846 -138519937 - L1MEc LINE L1 -4373 2029 1934 1 745 451 305 92 23 chr3 21079873 21080108 -138519675 - L1MEc LINE L1 -4556 1846 1538 1 745 267 289 81 20 chr3 21080188 21080386 -138519397 - L1MEc LINE L1 -4962 1440 1231 1 745 252 0 0 0 chr3 21080893 21080921 -138518862 + (T)n Simple_repeat Simple_repeat 1 28 0 1 745 532 345 53 15 chr3 21081016 21081222 -138518561 + B3A SINE B2 3 216 0 1 745 547 269 0 0 chr3 21081898 21082028 -138517755 + B1_Mur1 SINE Alu 5 134 -15 1 745 183 129 0 0 chr3 21082032 21082063 -138517720 + (TTA)n Simple_repeat Simple_repeat 2 32 0 1 745 828 25 0 33 chr3 21083018 21083140 -138516643 + L1Md_F3 LINE L1 6455 6572 -12 1 745 488 45 0 15 chr3 21083838 21083906 -138515877 + (GGGA)n Simple_repeat Simple_repeat 2 68 0 1 745 1300 216 23 3 chr3 21084428 21084778 -138515005 + L1VL4 LINE L1 798 1168 -5489 1 745 2661 190 56 60 chr3 21084780 21084871 -138514912 - RLTR20D LTR ERVK 0 568 470 1 745 450 0 0 0 chr3 21084871 21084921 -138514862 + (CA)n Simple_repeat Simple_repeat 1 50 0 1 745 468 0 0 0 chr3 21084921 21084972 -138514811 + (GA)n Simple_repeat Simple_repeat 2 53 0 1 745 2661 200 61 60 chr3 21084972 21085493 -138514290 - RLTR20D LTR ERVK -99 469 2 1 745 4936 196 60 32 chr3 21085493 21086250 -138513533 + L1VL4 LINE L1 1232 1991 -3895 1 745 3441 33 0 0 chr3 21086250 21086646 -138513137 - MTA_Mm LTR MaLR 0 396 1 1 745 8233 65 7 17 chr3 21086646 21087755 -138512028 - MTA_Mm-int LTR MaLR 0 1098 1 1 745 3214 63 0 0 chr3 21087755 21088151 -138511632 - MTA_Mm LTR MaLR 0 396 1 1 745 4936 196 60 32 chr3 21088151 21088588 -138511195 + L1VL4 LINE L1 1992 2459 -3427 1 745 6088 43 1 4 chr3 21088588 21089332 -138510451 + L1Md_F2 LINE L1 5829 6570 -12 1 745 4936 196 60 32 chr3 21089332 21089518 -138510265 + L1VL4 LINE L1 2460 2651 -3235 1 745 830 273 15 38 chr3 21089522 21089785 -138509998 + L1VL4 LINE L1 29 285 -6017 1 745 4739 125 9 0 chr3 21089774 21090835 -138508948 + L1VL4 LINE L1 169 1240 -2319 1 745 36748 7 0 1 chr3 21090837 21096624 -138503159 + L1Md_A LINE L1 1 5586 -297 1 745 9063 2 0 0 chr3 21096624 21097665 -138502118 + L1Md_A LINE L1 5587 6582 0 1 745 6729 120 11 51 chr3 21097667 21098944 -138500839 + L1VL4 LINE L1 1223 2448 -1111 1 745 1405 166 0 0 chr3 21098964 21099223 -138500560 + L1_Mm LINE L1 4914 5172 -711 1 745 829 146 0 14 chr3 21099227 21099373 -138500410 + L1Md_F LINE L1 237 380 -6258 1 93 21419 104 47 22 chr3 21099371 21103749 -138496034 + L1Md_F LINE L1 244 4713 -1170 1 746 3386 96 4 8 chr3 21103749 21104230 -138495553 + L1_Mus2 LINE L1 6088 6566 0 1 746 14501 162 29 8 chr3 21104232 21108038 -138491745 + L1_Mus4 LINE L1 2728 6628 -8 1 746 10612 175 39 27 chr3 21108023 21108870 -138490913 + L1_Mur2 LINE L1 2608 3476 -2401 1 746 620 45 11 0 chr3 21108870 21108958 -138490825 + (TAAAA)n Simple_repeat Simple_repeat 2 90 0 1 746 10612 175 39 27 chr3 21108958 21110344 -138489439 + L1_Mur2 LINE L1 3477 4853 -1024 1 746 279 0 0 0 chr3 21110344 21110375 -138489408 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1 746 10612 175 39 27 chr3 21110375 21110656 -138489127 + L1_Mur2 LINE L1 4854 5150 -727 1 746 28554 116 43 8 chr3 21110674 21116603 -138483180 + Lx4B LINE L1 450 6589 -469 1 746 426 223 0 21 chr3 21117444 21117540 -138482243 - MER5B DNA MER1_type -78 100 7 1 746 478 285 125 27 chr3 21118211 21118395 -138481388 + B4A SINE B4 1 202 -90 1 746 572 282 106 31 chr3 21118553 21118875 -138480908 + Lx8 LINE L1 7121 7466 -7 1 746 337 237 13 0 chr3 21118876 21118952 -138480831 + B4A SINE B4 216 292 0 1 746 27 62 0 0 chr3 21119459 21119507 -138480276 + AT_rich Low_complexity Low_complexity 1 48 0 1 746 796 311 96 8 chr3 21119555 21119940 -138479843 + Lx8 LINE L1 6828 7246 -227 1 746 256 255 43 43 chr3 21120846 21120961 -138478822 + Lx9 LINE L1 6884 6998 -646 1 746 243 79 0 0 chr3 21120962 21121000 -138478783 + (T)n Simple_repeat Simple_repeat 1 38 0 1 746 201 133 0 0 chr3 21121069 21121099 -138478684 + (CA)n Simple_repeat Simple_repeat 1 30 0 1 746 365 331 15 0 chr3 21121771 21121904 -138477879 - ID_B1 SINE B4 -1 223 89 1 746 22 56 0 0 chr3 21122034 21122070 -138477713 + AT_rich Low_complexity Low_complexity 1 36 0 1 746 339 255 20 0 chr3 21122070 21122172 -138477611 - L1MA7 LINE L1 -15 6276 6173 1 746 3186 213 82 86 chr3 21122470 21123470 -138476313 - RMER1A Other Other -4 1026 31 1 746 1087 302 28 56 chr3 21123476 21124057 -138475726 - RMER1B Other Other -635 431 7 1 746 299 359 81 55 chr3 21124707 21124943 -138474840 + MER74B LTR ERVL 58 299 -323 1 746 333 307 129 18 chr3 21125969 21126147 -138473636 - MIR SINE MIR -62 206 2 1 746 26426 78 23 10 chr3 21126373 21127644 -138472139 - L1Md_F2 LINE L1 -1 6581 5294 1 746 1583 72 5 5 chr3 21127644 21127866 -138471917 - L1Md_F2 LINE L1 0 6582 6361 1 746 26426 83 3 4 chr3 21127866 21130799 -138468984 - L1Md_F2 LINE L1 -590 5293 2364 1 746 7303 21 0 0 chr3 21130799 21131621 -138468162 - RLTR13B2 LTR ERVK 0 822 1 1 746 26426 83 3 4 chr3 21131621 21131947 -138467836 - L1Md_F2 LINE L1 -3520 2363 2039 1 746 4141 141 82 9 chr3 21131947 21133187 -138466596 - L1Md_F2 LINE L1 -4374 1509 193 1 746 26 30 0 0 chr3 21133462 21133495 -138466288 + AT_rich Low_complexity Low_complexity 1 33 0 1 746 388 260 0 0 chr3 21133512 21133589 -138466194 - B3A SINE B2 -121 77 1 1 746 2186 269 65 5 chr3 21134046 21134641 -138465142 + Lx6 LINE L1 6829 7459 -1 1 746 4952 89 11 0 chr3 21134665 21135331 -138464452 + Lx3_Mus LINE L1 6331 7003 -6 1 746 25 0 0 0 chr3 21135864 21135889 -138463894 + AT_rich Low_complexity Low_complexity 1 25 0 1 746 427 252 61 0 chr3 21136066 21136165 -138463618 - MTD LTR MaLR -36 383 279 1 746 216 0 0 0 chr3 21136244 21136268 -138463515 + (T)n Simple_repeat Simple_repeat 1 24 0 1 746 358 313 68 50 chr3 21136842 21137209 -138462574 + L1M4b LINE L1 1467 1802 -5532 1 746 239 333 114 0 chr3 21137406 21137511 -138462272 - MTD LTR MaLR -301 118 2 1 746 1588 170 31 11 chr3 21137665 21137951 -138461832 + ORR1B2 LTR MaLR 1 292 -75 1 746 462 118 0 0 chr3 21138173 21138241 -138461542 + ORR1B2 LTR MaLR 300 367 0 1 746 258 336 41 16 chr3 21139586 21139707 -138460076 + B4A SINE B4 1 124 -168 1 746 1004 143 7 0 chr3 21139749 21140030 -138459753 + (TATG)n Simple_repeat Simple_repeat 1 283 0 1 746 277 102 50 17 chr3 21140030 21140131 -138459652 + (TCTA)n Simple_repeat Simple_repeat 1 104 0 1 746 186 43 0 0 chr3 21140157 21140180 -138459603 + (TA)n Simple_repeat Simple_repeat 1 23 0 1 746 234 0 0 0 chr3 21140536 21140562 -138459221 + (T)n Simple_repeat Simple_repeat 1 26 0 1 746 30 45 0 0 chr3 21141320 21141364 -138458419 + AT_rich Low_complexity Low_complexity 1 44 0 1 746 210 37 0 0 chr3 21141376 21141403 -138458380 + (CA)n Simple_repeat Simple_repeat 2 28 0 1 746 288 0 0 0 chr3 21142998 21143030 -138456753 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 1 746 1812 40 0 0 chr3 21143244 21143468 -138456315 + L1Md_A LINE L1 6359 6582 0 1 746 1126 92 49 0 chr3 21144092 21144256 -138455527 - L1_Mus2 LINE L1 0 6566 6395 1 746 818 283 14 0 chr3 21144556 21144775 -138455008 + ID_B1 SINE B4 3 224 0 1 746 233 324 0 13 chr3 21145196 21145271 -138454512 + CT-rich Low_complexity Low_complexity 1 74 0 1 746 376 385 73 0 chr3 21145307 21145486 -138454297 - B4 SINE B4 -100 192 1 1 746 740 244 181 4 chr3 21146104 21146330 -138453453 + ORR1D2 LTR MaLR 105 370 0 1 746 14956 3 0 0 chr3 21146384 21148140 -138451643 + L1Md_A LINE L1 3831 5586 -297 1 746 9018 4 0 0 chr3 21148140 21149135 -138450648 + L1Md_A LINE L1 5587 6581 -1 1 746 23 33 0 0 chr3 21149140 21149170 -138450613 + AT_rich Low_complexity Low_complexity 1 30 0 1 746 328 270 68 47 chr3 21149634 21149817 -138449966 + L1VL2 LINE L1 84 379 -6039 1 746 353 310 0 0 chr3 21149984 21150113 -138449670 + L1VL4 LINE L1 578 706 -5813 1 746 2455 143 5 65 chr3 21150121 21150866 -138448917 + L1VL4 LINE L1 628 1331 -2486 1 746 512 65 0 38 chr3 21150866 21150946 -138448837 - Lx2B LINE L1 -590 6410 6334 1 746 363 215 0 0 chr3 21150946 21151011 -138448772 - MT2B2 LTR ERVL -389 195 131 1 746 3713 204 16 5 chr3 21150961 21151696 -138448087 - ORR1A4-int LTR MaLR -1219 744 2 1 746 1468 185 67 16 chr3 21151697 21152010 -138447773 - ORR1A4 LTR MaLR 0 329 1 1 746 640 180 149 0 chr3 21152010 21152171 -138447612 + Lx5 LINE L1 5296 5480 -397 1 746 735 261 15 147 chr3 21152178 21152519 -138447264 - RLTR23 LTR ERV1 -127 303 8 1 746 5890 229 39 9 chr3 21152549 21153960 -138445823 + Lx5 LINE L1 5587 7039 -11 1 746 29 47 0 0 chr3 21153962 21154005 -138445778 + AT_rich Low_complexity Low_complexity 1 43 0 1 746 233 210 0 31 chr3 21154075 21154139 -138445644 + A-rich Low_complexity Low_complexity 4 65 0 1 746 1245 223 75 55 chr3 21154536 21154734 -138445049 - RMER17C LTR ERVK -3 407 202 1 746 542 15 15 0 chr3 21154734 21154801 -138444982 + (GAGAA)n Simple_repeat Simple_repeat 4 71 0 1 746 1245 223 75 55 chr3 21154801 21155001 -138444782 - RMER17C LTR ERVK -209 201 1 1 746 7341 196 59 62 chr3 21155045 21157965 -138441818 + L1VL4 LINE L1 550 3487 -2390 1 746 437 219 0 0 chr3 21157962 21158067 -138441716 - L1_Mur1 LINE L1 -1231 4655 4551 1 746 15739 120 19 18 chr3 21158065 21161589 -138438194 - L1VL1 LINE L1 -1917 3966 441 1 746 5463 135 130 3 chr3 21161591 21162758 -138437025 + Lx2 LINE L1 5669 6983 -14 1 746 2401 165 85 28 chr3 21162769 21163069 -138436714 - RMER17C-int LTR ERVK -36 3202 2900 1 746 216 0 0 0 chr3 21163069 21163093 -138436690 + (CA)n Simple_repeat Simple_repeat 2 25 0 1 746 336 24 0 0 chr3 21163093 21163134 -138436649 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 746 2401 165 85 28 chr3 21163134 21163182 -138436601 - RMER17C-int LTR ERVK -339 2899 2825 1 746 3032 58 8 5 chr3 21163182 21163577 -138436206 - MTA_Mm LTR MaLR 0 396 1 1 746 2401 165 85 28 chr3 21163577 21163755 -138436028 - RMER17C-int LTR ERVK -414 2824 2646 1 746 6882 156 25 47 chr3 21163750 21165253 -138434530 - RMER17C-int LTR ERVK -752 2486 1097 1 746 209 351 0 0 chr3 21165543 21165620 -138434163 + GA-rich Low_complexity Low_complexity 6 82 0 1 746 1462 246 56 84 chr3 21165639 21166247 -138433536 - RMER17C-int LTR ERVK -2647 591 1 1 746 688 221 65 145 chr3 21166248 21166649 -138433134 - RMER17C LTR ERVK 0 410 42 1 746 308 365 96 0 chr3 21168698 21168813 -138430970 - B1F1 SINE Alu 0 149 24 1 746 216 255 0 0 chr3 21169067 21169114 -138430669 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 746 847 278 109 12 chr3 21169130 21169378 -138430405 - B4A SINE B4 0 292 21 1 746 254 184 0 13 chr3 21170160 21170237 -138429546 + (TCTCTG)n Simple_repeat Simple_repeat 2 77 0 1 746 404 341 45 19 chr3 21170238 21170395 -138429388 - B4 SINE B4 -44 248 92 1 746 21 0 0 0 chr3 21170594 21170615 -138429168 + AT_rich Low_complexity Low_complexity 1 21 0 2 746 235 270 22 146 chr3 21170722 21170804 -138428979 - YREP_Mm Unknown Unknown -1435 377 318 2 746 499 196 21 0 chr3 21170804 21170901 -138428882 + B1F1 SINE Alu 2 100 -49 2 746 448 93 27 0 chr3 21171927 21172002 -138427781 + (TC)n Simple_repeat Simple_repeat 1 77 0 2 746 568 295 88 0 chr3 21172010 21172203 -138427580 - ID_B1 SINE B4 -12 212 3 2 746 333 341 56 54 chr3 21172475 21172767 -138427016 - MLT1F2 LTR MaLR -42 463 209 2 746 699 316 45 78 chr3 21172814 21173171 -138426612 + ORR1E LTR MaLR 15 359 0 2 746 492 321 29 0 chr3 21173171 21173307 -138426476 - MLT1F2 LTR MaLR -420 140 1 2 746 487 285 19 19 chr3 21173456 21173617 -138426166 - Lx9 LINE L1 -372 7272 7112 2 746 227 353 134 29 chr3 21173718 21173890 -138425893 - MLT1F2-int LTR MaLR -255 1234 1045 2 746 693 92 0 0 chr3 21173904 21174002 -138425781 + (TTCC)n Simple_repeat Simple_repeat 3 100 0 2 746 497 312 134 42 chr3 21174093 21174354 -138425429 - MLT1F2-int LTR MaLR -1145 344 60 2 746 309 259 224 27 chr3 21174537 21174684 -138425099 + MTEb LTR MaLR 204 379 0 2 746 292 158 229 12 chr3 21175709 21175792 -138423991 + PB1D10 SINE Alu 3 103 -14 2 746 234 0 0 0 chr3 21176732 21176758 -138423025 + (TGG)n Simple_repeat Simple_repeat 1 26 0 2 746 306 0 0 0 chr3 21176759 21176793 -138422990 + (TTGG)n Simple_repeat Simple_repeat 2 35 0 2 746 1149 89 82 27 chr3 21176809 21176826 -138422957 - B2_Mm2 SINE B2 0 195 181 2 746 198 0 0 0 chr3 21176826 21176848 -138422935 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 2 746 1149 89 82 27 chr3 21176848 21177014 -138422769 - B2_Mm2 SINE B2 -15 180 2 2 746 22 70 0 0 chr3 21177368 21177411 -138422372 + AT_rich Low_complexity Low_complexity 1 43 0 2 746 311 318 143 29 chr3 21177952 21178024 -138421759 + L1MA4A LINE L1 5504 5587 -260 2 746 804 258 159 67 chr3 21178024 21178369 -138421414 - MTE2a LTR MaLR -2 377 1 2 746 532 323 52 8 chr3 21178369 21178678 -138421105 + L1MA4A LINE L1 5588 5994 -162 2 746 1757 197 33 11 chr3 21178949 21179308 -138420475 + ORR1B2 LTR MaLR 1 367 0 2 746 28217 85 7 82 chr3 21179480 21185192 -138414591 + L1Md_F2 LINE L1 307 5585 -298 2 746 7683 62 4 16 chr3 21185193 21186201 -138413582 + L1Md_F2 LINE L1 5587 6582 0 2 746 1203 284 11 7 chr3 21186739 21187016 -138412767 + B4 SINE B4 15 292 0 2 746 253 272 122 64 chr3 21187412 21187608 -138412175 - MIRc SINE MIR -29 233 19 2 746 1148 278 85 12 chr3 21188700 21189042 -138410741 + MTEa LTR MaLR 1 367 -12 2 746 259 333 33 0 chr3 21189099 21189189 -138410594 + BC1_Mm scRNA scRNA 6 98 -54 2 746 703 318 5 0 chr3 21189659 21189848 -138409935 + ID_B1 SINE B4 1 190 -34 2 746 219 286 20 0 chr3 21189966 21190015 -138409768 + ID4 SINE ID 18 67 -16 2 746 277 311 73 40 chr3 21190273 21190397 -138409386 - MTE2a LTR MaLR -172 207 80 2 746 651 301 86 75 chr3 21190494 21190532 -138409251 + B4 SINE B4 4 37 -255 2 746 1259 242 41 67 chr3 21190532 21190921 -138408862 - MTE2b LTR MaLR 0 379 1 2 746 651 301 86 75 chr3 21190921 21191162 -138408621 + B4 SINE B4 38 286 -6 2 746 288 0 0 0 chr3 21191166 21191198 -138408585 + (CA)n Simple_repeat Simple_repeat 1 32 0 2 746 615 291 13 33 chr3 21191229 21191382 -138408401 + RSINE1 SINE B4 3 152 -13 2 746 24 0 0 0 chr3 21191445 21191469 -138408314 + AT_rich Low_complexity Low_complexity 1 24 0 2 746 25 51 0 0 chr3 21191502 21191541 -138408242 + AT_rich Low_complexity Low_complexity 1 39 0 2 746 676 321 34 7 chr3 21192073 21192371 -138407412 + MER33 DNA MER1_type 19 324 0 2 746 404 252 49 108 chr3 21192487 21192775 -138407008 + MTEa LTR MaLR 5 341 -38 2 746 485 316 44 6 chr3 21193601 21193627 -138406156 - B3A SINE B2 -6 192 167 2 746 384 22 0 0 chr3 21193627 21193672 -138406111 + (TG)n Simple_repeat Simple_repeat 2 46 0 2 746 485 258 71 3 chr3 21193672 21193818 -138405965 - B3A SINE B2 -32 166 13 2 746 1023 218 276 0 chr3 21193813 21194106 -138405677 + MTD LTR MaLR 34 407 -12 2 746 565 45 34 0 chr3 21194119 21194207 -138405576 + (TAAA)n Simple_repeat Simple_repeat 2 92 0 2 746 353 315 9 9 chr3 21195291 21195400 -138404383 - PB1D10 SINE Alu -8 109 1 2 746 309 109 0 0 chr3 21197500 21197555 -138402228 + (GA)n Simple_repeat Simple_repeat 2 56 0 2 746 405 0 0 0 chr3 21197960 21198005 -138401778 + (TC)n Simple_repeat Simple_repeat 2 46 0 2 746 279 130 0 0 chr3 21198005 21198058 -138401725 + (TG)n Simple_repeat Simple_repeat 1 54 0 2 746 918 28 0 0 chr3 21198058 21198166 -138401617 + (GA)n Simple_repeat Simple_repeat 1 109 0 2 746 517 323 77 5 chr3 21198258 21198454 -138401329 - B3 SINE B2 -5 211 2 2 746 306 233 14 0 chr3 21199480 21199553 -138400230 + B3A SINE B2 84 157 -41 2 746 414 0 0 0 chr3 21199569 21199615 -138400168 + (CA)n Simple_repeat Simple_repeat 2 47 0 2 746 431 270 72 7 chr3 21199858 21200011 -138399772 + L1_Mus1 LINE L1 663 825 -5791 2 746 29639 116 14 14 chr3 21200024 21205924 -138393859 + L1_Mus1 LINE L1 675 6567 0 2 746 630 89 0 0 chr3 21205937 21206027 -138393756 + (GGA)n Simple_repeat Simple_repeat 1 90 0 2 746 380 321 108 30 chr3 21206080 21206247 -138393536 + B4 SINE B4 1 180 -112 2 746 387 0 0 0 chr3 21206263 21206306 -138393477 + (CA)n Simple_repeat Simple_repeat 2 44 0 2 746 260 338 0 0 chr3 21206330 21206404 -138393379 + (CA)n Simple_repeat Simple_repeat 1 74 0 2 746 2849 96 36 59 chr3 21207275 21207751 -138392032 - Lx3B LINE L1 -4 6969 6505 2 746 437 90 15 0 chr3 21207751 21207818 -138391965 - Lx3_Mus LINE L1 -1134 5875 5808 2 746 687 122 95 11 chr3 21207898 21208046 -138391737 - MTD LTR MaLR 0 419 230 2 746 22 35 0 0 chr3 21208084 21208113 -138391670 + AT_rich Low_complexity Low_complexity 1 29 0 2 746 1223 251 33 79 chr3 21208173 21208592 -138391191 - MTE2a LTR MaLR -2 417 1 2 746 22 56 0 0 chr3 21209543 21209579 -138390204 + AT_rich Low_complexity Low_complexity 1 36 0 2 746 420 20 0 0 chr3 21211027 21211076 -138388707 + (TTTTG)n Simple_repeat Simple_repeat 4 52 0 2 746 681 272 57 97 chr3 21211680 21212030 -138387753 + RMER5 LTR ERV1 181 516 -18 2 746 315 0 0 0 chr3 21214176 21214211 -138385572 + (CA)n Simple_repeat Simple_repeat 2 36 0 2 746 343 319 0 0 chr3 21214820 21214911 -138384872 + MER5B DNA MER1_type 1 91 -87 2 746 281 172 126 0 chr3 21215349 21215436 -138384347 + MER96B DNA hAT 59 156 -261 2 746 271 315 21 43 chr3 21216101 21216194 -138383589 + B1F SINE Alu 10 100 -49 2 746 779 21 0 10 chr3 21216251 21216349 -138383434 + (CA)n Simple_repeat Simple_repeat 1 97 0 2 746 381 93 0 0 chr3 21216439 21216493 -138383290 + (T)n Simple_repeat Simple_repeat 1 54 0 2 746 41187 6 0 1 chr3 21216710 21223537 -138376246 - L1Md_A LINE L1 0 6582 1 2 746 779 249 19 28 chr3 21224086 21224297 -138375486 + B3 SINE B2 5 213 -3 2 746 231 152 0 0 chr3 21224297 21224343 -138375440 + (TA)n Simple_repeat Simple_repeat 1 46 0 2 746 306 0 0 0 chr3 21225023 21225057 -138374726 + (CA)n Simple_repeat Simple_repeat 2 35 0 2 746 1037 209 0 5 chr3 21225515 21225717 -138374066 - B3 SINE B2 -8 208 8 2 746 343 262 192 23 chr3 21226073 21226344 -138373439 - L1ME2 LINE L1 -427 6017 5705 2 746 511 249 85 106 chr3 21226672 21226861 -138372922 - B3A SINE B2 0 198 14 2 746 512 319 108 39 chr3 21226969 21227432 -138372351 - L1ME2 LINE L1 -2569 3577 3083 2 746 4914 109 25 29 chr3 21227452 21228209 -138371574 + Lx3A LINE L1 6222 6975 -6 2 746 266 53 34 51 chr3 21228437 21228488 -138371295 + (TTTG)n Simple_repeat Simple_repeat 2 52 0 2 746 1124 62 7 7 chr3 21228488 21228635 -138371148 - B1_Mus1 SINE Alu 0 148 2 2 746 266 53 34 51 chr3 21228635 21228642 -138371141 + (TTTG)n Simple_repeat Simple_repeat 3 9 0 2 746 22 35 0 0 chr3 21229561 21229590 -138370193 + AT_rich Low_complexity Low_complexity 1 29 0 2 746 317 353 78 60 chr3 21230643 21230764 -138369019 - L1ME2 LINE L1 -4915 1327 1217 2 746 405 0 0 0 chr3 21230764 21230809 -138368974 + (TG)n Simple_repeat Simple_repeat 2 46 0 2 746 317 353 78 60 chr3 21230809 21230970 -138368813 - L1ME2 LINE L1 -5026 1216 1040 2 746 450 0 0 0 chr3 21231178 21231228 -138368555 + (CA)n Simple_repeat Simple_repeat 1 50 0 2 746 22 35 0 0 chr3 21231448 21231477 -138368306 + AT_rich Low_complexity Low_complexity 1 29 0 2 746 288 20 40 20 chr3 21232445 21232495 -138367288 + (TTTG)n Simple_repeat Simple_repeat 2 52 0 2 746 268 281 0 24 chr3 21232819 21232903 -138366880 + GA-rich Low_complexity Low_complexity 2 83 0 2 746 673 238 153 45 chr3 21233036 21233238 -138366545 + B4A SINE B4 1 224 -68 2 746 453 316 36 22 chr3 21233241 21233253 -138366530 + ID_B1 SINE B4 78 145 -79 2 746 709 205 0 0 chr3 21233253 21233370 -138366413 + B1_Mur4 SINE Alu 10 126 -24 2 746 303 321 35 70 chr3 21233375 21233603 -138366180 - RMER12 LTR ERVK -360 962 743 2 93 980 103 7 58 chr3 21233622 21233777 -138366006 + B1_Mus1 SINE Alu 2 148 0 2 747 1019 276 83 46 chr3 21233969 21234318 -138365465 - MTE2a LTR MaLR -1 378 17 2 747 274 329 64 45 chr3 21234330 21234486 -138365297 - RLTR14 LTR ERV1 0 382 224 2 747 207 250 0 19 chr3 21234890 21234943 -138364840 + MIR SINE MIR 103 154 -108 2 747 737 76 0 9 chr3 21235751 21235857 -138363926 + (TTCC)n Simple_repeat Simple_repeat 3 107 0 2 747 1404 70 0 11 chr3 21236823 21237010 -138362773 + B2_Mm2 SINE B2 2 186 -9 2 747 787 286 100 50 chr3 21237176 21237396 -138362387 - MTEa LTR MaLR 0 379 132 2 747 242 0 61 0 chr3 21237396 21237429 -138362354 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 2 747 1131 65 0 0 chr3 21237429 21237567 -138362216 - B1_Mus1 SINE Alu -9 139 2 2 747 787 286 100 50 chr3 21237567 21237706 -138362077 - MTEa LTR MaLR -248 131 2 2 747 36 23 0 0 chr3 21239181 21239224 -138360559 + AT_rich Low_complexity Low_complexity 1 43 0 2 747 3039 294 71 13 chr3 21239225 21240419 -138359364 - Lx8 LINE L1 -9 7464 6201 2 747 464 184 0 10 chr3 21240449 21240553 -138359230 + (TA)n Simple_repeat Simple_repeat 2 104 0 2 747 552 188 163 8 chr3 21241408 21241537 -138358246 + B1_Mur2 SINE Alu 1 149 0 2 747 195 42 0 0 chr3 21241537 21241561 -138358222 + (CAAAAA)n Simple_repeat Simple_repeat 1 24 0 2 747 488 349 73 70 chr3 21242120 21242450 -138357333 - MER121 Unknown Unknown -52 360 30 3 747 1531 251 97 47 chr3 21243505 21244041 -138355742 + RMER2 LTR ERV1 5 567 0 3 747 457 340 186 18 chr3 21244135 21244521 -138355262 + L2a LINE L2 2433 2883 -536 3 747 349 344 108 22 chr3 21244542 21244765 -138355018 + L2a LINE L2 3157 3398 -28 3 747 617 355 68 49 chr3 21244846 21245377 -138354406 - L1MC1 LINE L1 0 6333 5793 3 747 460 329 24 30 chr3 21245421 21245590 -138354193 + B3A SINE B2 1 168 -30 3 747 399 41 0 0 chr3 21245599 21245648 -138354135 + (CA)n Simple_repeat Simple_repeat 2 50 0 3 747 334 339 139 5 chr3 21245673 21245860 -138353923 - L1MC1 LINE L1 -547 5797 5586 3 747 309 232 133 126 chr3 21245891 21246034 -138353749 - L1MC1 LINE L1 -837 5496 5353 3 747 627 274 17 51 chr3 21246062 21246239 -138353544 - B3A SINE B2 -11 187 17 3 747 579 257 22 0 chr3 21246262 21246441 -138353342 - L1MC1 LINE L1 -788 5358 5176 3 747 4610 145 115 15 chr3 21246500 21247241 -138352542 - Lx LINE L1 -2 6652 5822 3 747 3652 42 9 0 chr3 21247241 21247673 -138352110 + RLTR10C LTR ERVK 1 436 0 3 747 4610 145 115 15 chr3 21247673 21247818 -138351965 - Lx LINE L1 -833 5821 5677 3 747 613 284 118 10 chr3 21247934 21248137 -138351646 + B4 SINE B4 24 248 -44 3 747 961 8 8 16 chr3 21248182 21248305 -138351478 + (TAGA)n Simple_repeat Simple_repeat 4 125 0 3 747 189 349 79 0 chr3 21249315 21249378 -138350405 + MIRb SINE MIR 122 189 -79 3 747 989 268 58 60 chr3 21249630 21250027 -138349756 - MTE2a LTR MaLR -13 406 1 3 747 240 313 12 0 chr3 21251490 21251573 -138348210 + GA-rich Low_complexity Low_complexity 2 85 0 3 747 198 143 0 0 chr3 21251598 21251633 -138348150 + (TTTA)n Simple_repeat Simple_repeat 3 37 0 3 747 27 0 0 0 chr3 21251904 21251931 -138347852 + AT_rich Low_complexity Low_complexity 1 27 0 3 747 521 309 155 20 chr3 21252146 21252397 -138347386 + B4 SINE B4 5 289 -3 3 747 2456 147 64 112 chr3 21253365 21253947 -138345836 + Lx3C LINE L1 6423 6976 0 3 747 200 238 0 0 chr3 21254060 21254102 -138345681 + (TATATG)n Simple_repeat Simple_repeat 1 42 0 3 747 420 20 0 0 chr3 21255699 21255748 -138344035 + (TC)n Simple_repeat Simple_repeat 1 49 0 3 747 24 32 0 0 chr3 21255775 21255806 -138343977 + AT_rich Low_complexity Low_complexity 1 31 0 3 747 201 147 0 0 chr3 21255889 21255923 -138343860 + (CA)n Simple_repeat Simple_repeat 2 35 0 3 747 284 231 76 13 chr3 21256947 21257026 -138342757 - MTEa LTR MaLR 0 379 296 3 747 2452 234 66 5 chr3 21257094 21257686 -138342097 + RMER1A Other Other 74 701 -329 3 747 493 160 0 0 chr3 21257675 21257769 -138342014 + RMER1B Other Other 968 1061 -5 3 747 320 239 15 0 chr3 21257813 21257880 -138341903 - ORR1E LTR MaLR -285 74 7 3 747 192 276 73 37 chr3 21258278 21258328 -138341455 + MIRc SINE MIR 21 72 -196 3 747 880 108 0 13 chr3 21258328 21258478 -138341305 + (TTTCC)n Simple_repeat Simple_repeat 3 150 0 3 747 192 320 60 60 chr3 21258478 21258614 -138341169 + MIR3 SINE MIR 67 207 -1 3 747 41 58 0 0 chr3 21260603 21260672 -138339111 + AT_rich Low_complexity Low_complexity 1 69 0 3 747 21 57 0 0 chr3 21260778 21260813 -138338970 + AT_rich Low_complexity Low_complexity 1 35 0 3 747 412 275 85 50 chr3 21261000 21261199 -138338584 + ID_B1 SINE B4 2 207 -17 3 747 389 279 94 29 chr3 21261279 21261449 -138338334 - MIR SINE MIR -75 187 7 3 747 381 371 13 38 chr3 21261640 21261797 -138337986 + RSINE1 SINE B4 9 161 -4 3 747 224 269 15 15 chr3 21261801 21261869 -138337914 + (CA)n Simple_repeat Simple_repeat 2 69 0 3 747 1079 94 0 0 chr3 21264181 21264319 -138335464 - B1_Mus2 SINE Alu -9 138 1 3 747 342 100 0 0 chr3 21264595 21264655 -138335128 + (GA)n Simple_repeat Simple_repeat 1 60 0 3 747 239 232 29 14 chr3 21265219 21265277 -138334506 - Tigger7 DNA MER2_type -1975 516 458 3 747 385 333 28 9 chr3 21265277 21265383 -138334400 + PB1 SINE Alu 1 108 -19 3 747 648 337 124 5 chr3 21265427 21265821 -138333962 - Tigger7 DNA MER2_type -2027 464 23 3 747 291 104 0 0 chr3 21267556 21267604 -138332179 + (TA)n Simple_repeat Simple_repeat 2 49 0 3 747 3278 43 5 0 chr3 21267604 21267997 -138331786 - MTA_Mm LTR MaLR -1 395 1 3 747 8372 60 7 4 chr3 21267997 21269091 -138330692 - MTA_Mm-int LTR MaLR 0 1098 1 3 747 3135 63 5 0 chr3 21269091 21269485 -138330298 - MTA_Mm LTR MaLR 0 396 1 3 747 234 91 0 0 chr3 21269552 21269585 -138330198 + (CCTG)n Simple_repeat Simple_repeat 2 34 0 3 747 300 27 0 0 chr3 21269589 21269626 -138330157 + (TG)n Simple_repeat Simple_repeat 1 37 0 3 747 543 103 0 0 chr3 21269626 21269723 -138330060 + (GA)n Simple_repeat Simple_repeat 2 98 0 3 747 381 328 46 23 chr3 21269725 21269736 -138330047 - ID_B1 SINE B4 -12 212 203 3 747 486 33 0 0 chr3 21269736 21269796 -138329987 + (TG)n Simple_repeat Simple_repeat 2 61 0 3 747 381 328 46 23 chr3 21269796 21269915 -138329868 - ID_B1 SINE B4 -22 202 79 3 747 267 103 0 0 chr3 21270653 21270692 -138329091 + (TTTTC)n Simple_repeat Simple_repeat 2 40 0 3 747 732 66 0 36 chr3 21270694 21270804 -138328979 - B1_Mus2 SINE Alu 0 147 42 3 747 225 157 107 89 chr3 21270736 21270848 -138328935 - RLTR25B LTR ERVK -518 510 397 3 747 331 73 35 35 chr3 21270844 21270901 -138328882 - B1_Mur4 SINE Alu -90 60 4 3 747 2178 167 29 36 chr3 21270931 21271377 -138328406 - Lx4B LINE L1 -6 7052 6610 3 747 3610 45 16 0 chr3 21271379 21271827 -138327956 - L1Md_F2 LINE L1 0 6582 6128 3 747 5054 168 42 4 chr3 21271828 21272856 -138326927 - Lx4B LINE L1 -436 6622 5546 3 747 201 94 0 0 chr3 21273466 21273498 -138326285 + (TTTTTA)n Simple_repeat Simple_repeat 5 36 0 3 747 384 77 0 0 chr3 21274151 21274203 -138325580 + (T)n Simple_repeat Simple_repeat 1 52 0 3 747 261 319 109 20 chr3 21274203 21274497 -138325286 - L1M5 LINE L1 -3556 2590 2271 3 747 279 279 0 0 chr3 21274644 21274712 -138325071 - ID4_ SINE ID -14 69 2 3 747 742 309 70 73 chr3 21274935 21275361 -138324422 - MLT1D LTR MaLR -7 498 74 3 747 180 0 0 0 chr3 21275857 21275877 -138323906 + (GA)n Simple_repeat Simple_repeat 2 21 0 3 747 232 277 23 98 chr3 21276603 21276735 -138323048 + RMER12 LTR ERVK 494 615 -707 3 747 345 47 0 0 chr3 21277232 21277275 -138322508 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 747 686 242 0 0 chr3 21277317 21277441 -138322342 - B3A SINE B2 -73 125 2 3 747 815 287 19 0 chr3 21277709 21277925 -138321858 + ID_B1 SINE B4 3 222 -2 3 747 223 237 0 0 chr3 21279301 21279360 -138320423 + (TCTCTG)n Simple_repeat Simple_repeat 6 64 0 3 747 730 306 24 48 chr3 21279365 21279660 -138320123 - B4 SINE B4 0 292 5 3 747 5144 120 20 5 chr3 21279902 21281502 -138318281 + L1VL4 LINE L1 42 1671 -1888 3 747 34539 48 15 3 chr3 21281504 21286866 -138312917 + L1Md_T LINE L1 160 5586 -297 3 747 8018 55 0 0 chr3 21286866 21287862 -138311921 + L1Md_T LINE L1 5587 6582 0 3 747 31220 58 6 1 chr3 21287862 21288220 -138311563 + L1Md_F2 LINE L1 1302 1659 -4224 3 747 207 25 0 70 chr3 21288220 21288263 -138311520 + (TAA)n Simple_repeat Simple_repeat 3 42 0 3 747 31220 58 6 1 chr3 21288263 21292169 -138307614 + L1Md_F2 LINE L1 1660 5584 -299 3 747 7605 69 1 0 chr3 21292171 21293145 -138306638 + L1Md_F2 LINE L1 5589 6563 -19 3 747 26 0 0 0 chr3 21293145 21293171 -138306612 + AT_rich Low_complexity Low_complexity 1 26 0 3 747 237 368 0 0 chr3 21293510 21293605 -138306178 + (TG)n Simple_repeat Simple_repeat 2 96 0 3 747 338 184 61 0 chr3 21294275 21294373 -138305410 + Lx5 LINE L1 6947 7050 0 3 747 405 0 0 0 chr3 21294493 21294538 -138305245 + (CA)n Simple_repeat Simple_repeat 2 46 0 3 747 611 81 10 0 chr3 21294570 21294669 -138305114 + (TC)n Simple_repeat Simple_repeat 2 101 0 3 747 360 0 0 0 chr3 21294669 21294709 -138305074 + (CA)n Simple_repeat Simple_repeat 1 40 0 3 747 525 16 0 0 chr3 21295635 21295697 -138304086 + (TG)n Simple_repeat Simple_repeat 1 62 0 3 747 1016 39 0 8 chr3 21297988 21298118 -138301665 + (TTCC)n Simple_repeat Simple_repeat 4 132 0 3 747 311 324 143 7 chr3 21298123 21298135 -138301648 - RSINE1 SINE B4 -4 161 150 3 747 234 0 0 0 chr3 21298135 21298161 -138301622 + (TA)n Simple_repeat Simple_repeat 1 26 0 3 747 311 324 143 7 chr3 21298161 21298288 -138301495 - RSINE1 SINE B4 -16 149 3 3 747 408 40 0 0 chr3 21298411 21298461 -138301322 + (TAG)n Simple_repeat Simple_repeat 1 50 0 3 747 310 237 113 119 chr3 21298664 21299009 -138300774 - RMER17C LTR ERVK -61 349 7 3 747 528 231 87 23 chr3 21299036 21299209 -138300574 - RMER17C-int LTR ERVK -13 3225 3042 3 747 461 339 20 50 chr3 21300152 21300450 -138299333 - B4 SINE B4 0 292 4 3 747 293 286 26 0 chr3 21300696 21300773 -138299010 + MER67A LTR ERV1 3 81 -462 3 747 547 58 0 88 chr3 21301019 21301132 -138298651 - L1Md_F2 LINE L1 0 6582 6480 3 747 1076 62 0 7 chr3 21301132 21301277 -138298506 + L1_Mm LINE L1 5540 5683 -200 3 747 374 51 51 0 chr3 21301430 21301489 -138298294 + (TTTTG)n Simple_repeat Simple_repeat 1 62 0 3 747 285 29 0 0 chr3 21301498 21301532 -138298251 + (TGG)n Simple_repeat Simple_repeat 1 34 0 3 747 1092 81 0 26 chr3 21301532 21301674 -138298109 - B1_Mus1 SINE Alu -6 142 1 3 747 4483 53 0 4 chr3 21301719 21302271 -138297512 - L1Md_F2 LINE L1 -12 6570 6021 3 747 1049 287 26 44 chr3 21303044 21303430 -138296353 + MTEa LTR MaLR 1 379 0 3 747 252 0 0 0 chr3 21303597 21303625 -138296158 + (A)n Simple_repeat Simple_repeat 1 28 0 3 747 186 103 0 0 chr3 21303669 21303698 -138296085 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 3 747 2222 211 49 21 chr3 21305140 21305504 -138294279 + Lx7 LINE L1 6865 7247 -449 3 747 384 119 0 0 chr3 21305504 21305563 -138294220 + (TG)n Simple_repeat Simple_repeat 2 60 0 3 747 2222 211 49 21 chr3 21305563 21305726 -138294057 + Lx7 LINE L1 7248 7407 -289 3 747 388 293 75 41 chr3 21305994 21306140 -138293643 - RSINE1 SINE B4 -3 162 12 3 747 876 269 75 100 chr3 21306948 21307337 -138292446 - MTE2a LTR MaLR 0 379 1 3 747 271 136 0 0 chr3 21307338 21307382 -138292401 + MT2A LTR ERVL 490 533 0 3 747 215 343 68 10 chr3 21307852 21307955 -138291828 - L2a LINE L2 -61 3365 3257 3 747 421 371 113 45 chr3 21308010 21308495 -138291288 - MLT1F2 LTR MaLR -16 544 27 3 747 666 78 0 0 chr3 21308648 21308750 -138291033 + (TG)n Simple_repeat Simple_repeat 2 103 0 3 747 303 179 0 0 chr3 21309496 21309563 -138290220 + (CA)n Simple_repeat Simple_repeat 2 68 0 3 747 196 113 0 54 chr3 21311284 21311340 -138288443 + T-rich Low_complexity Low_complexity 2 54 0 3 747 208 412 32 13 chr3 21311486 21311641 -138288142 - MIRc SINE MIR -85 183 26 4 747 186 43 0 0 chr3 21311869 21311892 -138287891 + (GTTTG)n Simple_repeat Simple_repeat 2 24 0 4 747 555 312 106 16 chr3 21311895 21312084 -138287699 - ID_B1 SINE B4 -8 216 11 4 747 2284 233 18 29 chr3 21312334 21312891 -138286892 + Lx9 LINE L1 6349 6899 -745 4 747 1146 243 70 50 chr3 21312882 21313285 -138286498 + Lx9 LINE L1 7225 7635 -9 4 747 217 290 105 35 chr3 21313390 21313533 -138286250 - MIRb SINE MIR -63 205 53 4 747 224 344 24 23 chr3 21314469 21314599 -138285184 - MIRc SINE MIR -80 188 61 4 747 397 292 125 69 chr3 21314791 21315151 -138284632 - L1MC4 LINE L1 -100 7942 7563 4 747 1266 278 83 13 chr3 21315372 21315759 -138284024 - MTD LTR MaLR -5 414 1 4 747 781 303 85 66 chr3 21315807 21316163 -138283620 + MTE2a LTR MaLR 1 368 -51 4 747 306 0 0 0 chr3 21316163 21316197 -138283586 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 4 747 781 291 84 71 chr3 21316197 21316239 -138283544 + MTE2a LTR MaLR 330 374 -5 4 747 294 254 0 14 chr3 21316328 21316400 -138283383 + (CATA)n Simple_repeat Simple_repeat 4 74 0 4 747 240 259 35 53 chr3 21317171 21317285 -138282498 + L1_Mur3 LINE L1 5303 5414 -466 4 747 893 166 0 6 chr3 21317312 21317482 -138282301 + GA-rich Low_complexity Low_complexity 2 170 0 4 747 513 0 0 0 chr3 21317484 21317541 -138282242 + (GGAA)n Simple_repeat Simple_repeat 1 57 0 4 747 504 302 53 25 chr3 21317577 21317926 -138281857 + L1MA4 LINE L1 5560 5928 -369 4 747 22 0 0 0 chr3 21318040 21318062 -138281721 + AT_rich Low_complexity Low_complexity 1 22 0 4 747 720 318 77 13 chr3 21319490 21319866 -138279917 - Arthur1 DNA Tip100 -116 3831 3432 4 747 23 0 0 0 chr3 21320712 21320735 -138279048 + AT_rich Low_complexity Low_complexity 1 23 0 4 747 250 250 30 50 chr3 21321149 21321250 -138278533 - MER57A-int LTR ERV1 -291 5896 5798 4 747 270 0 0 0 chr3 21321803 21321833 -138277950 + (TAAAA)n Simple_repeat Simple_repeat 5 34 0 4 747 2087 205 76 22 chr3 21323556 21324055 -138275728 + RLTR24 LTR ERV1 1 526 -3 4 747 324 295 196 54 chr3 21324069 21324273 -138275510 - RMER2 LTR ERV1 0 567 335 4 747 408 161 0 0 chr3 21325459 21325540 -138274243 + (CA)n Simple_repeat Simple_repeat 1 81 0 4 747 294 365 37 48 chr3 21325874 21326102 -138273681 + MIR SINE MIR 38 256 -6 4 747 1098 244 110 23 chr3 21326959 21327294 -138272489 + MTD LTR MaLR 46 395 -24 4 747 492 265 96 16 chr3 21328077 21328265 -138271518 + B3 SINE B2 1 203 -13 4 747 338 277 56 35 chr3 21328763 21328905 -138270878 - Kanga1a DNA Tc2 -25 729 585 4 747 1795 32 0 0 chr3 21329109 21329326 -138270457 + L1Md_F3 LINE L1 6115 6331 -253 4 747 513 303 8 15 chr3 21329372 21329506 -138270277 - ID_B1 SINE B4 -13 211 79 4 747 492 296 157 20 chr3 21329499 21329805 -138269978 - Kanga1a DNA Tc2 -393 361 14 4 747 793 318 163 17 chr3 21330199 21330660 -138269123 - MT2A LTR ERVL 0 533 6 4 747 431 100 0 14 chr3 21330982 21331053 -138268730 + (CA)n Simple_repeat Simple_repeat 2 71 0 4 747 207 242 16 16 chr3 21331449 21331512 -138268271 + CT-rich Low_complexity Low_complexity 2 64 0 4 747 357 259 0 49 chr3 21332150 21332272 -138267511 - L1MA4A LINE L1 -379 5924 5809 4 747 489 34 0 0 chr3 21332282 21332341 -138267442 + (TC)n Simple_repeat Simple_repeat 2 60 0 4 747 277 340 132 83 chr3 21332746 21333012 -138266771 + ORR1E LTR MaLR 81 359 0 4 747 1029 282 134 11 chr3 21333221 21333594 -138266189 - MTD LTR MaLR 0 419 1 4 747 180 0 0 0 chr3 21333875 21333895 -138265888 + (T)n Simple_repeat Simple_repeat 1 20 0 4 747 569 265 48 6 chr3 21335224 21335391 -138264392 + MER121 Unknown Unknown 65 238 -174 4 747 442 289 35 105 chr3 21335758 21335986 -138263797 - B4 SINE B4 -77 215 4 4 747 998 221 163 28 chr3 21336188 21336514 -138263269 - ORR1D2 LTR MaLR 0 370 1 4 747 225 279 116 75 chr3 21336555 21336702 -138263081 + MIR SINE MIR 18 170 -92 4 747 229 216 24 119 chr3 21336726 21336810 -138262973 - L2 LINE L2 -2790 629 554 4 747 980 273 62 12 chr3 21337179 21337435 -138262348 - MTEb LTR MaLR -4 375 107 4 747 477 299 289 25 chr3 21337828 21338146 -138261637 - MTD LTR MaLR 0 419 18 4 747 187 286 47 16 chr3 21338738 21338802 -138260981 + MIRm SINE MIR 91 156 -120 4 747 205 88 29 0 chr3 21339666 21339700 -138260083 + (CAAAA)n Simple_repeat Simple_repeat 3 37 0 4 747 572 243 274 0 chr3 21340837 21341156 -138258627 - MTD LTR MaLR -1 418 13 4 747 522 283 64 37 chr3 21341219 21341406 -138258377 - MTEa LTR MaLR -65 314 123 4 747 252 323 188 23 chr3 21341862 21341918 -138257865 - MT2A LTR ERVL -378 155 1 4 747 305 286 0 0 chr3 21341918 21341995 -138257788 - MTEa LTR MaLR -302 77 1 4 747 1045 286 50 7 chr3 21342530 21342808 -138256975 + B4 SINE B4 1 290 -2 4 747 709 301 57 0 chr3 21343267 21343476 -138256307 - ID_B1 SINE B4 0 224 4 4 747 345 140 0 0 chr3 21344195 21344252 -138255531 + (TA)n Simple_repeat Simple_repeat 1 57 0 4 747 227 333 14 0 chr3 21344414 21344486 -138255297 - MIRm SINE MIR -1 275 203 4 747 2088 74 30 23 chr3 21344814 21345119 -138254664 + IAPLTR2b LTR ERVK 1 307 -20 4 747 237 65 0 0 chr3 21345269 21345300 -138254483 + (CCA)n Simple_repeat Simple_repeat 1 31 0 4 747 578 318 30 139 chr3 21345998 21346301 -138253482 + B4A SINE B4 15 284 -8 4 747 288 0 0 0 chr3 21346337 21346369 -138253414 + (CA)n Simple_repeat Simple_repeat 1 32 0 4 747 528 305 57 95 chr3 21346375 21346585 -138253198 + B3A SINE B2 15 216 0 4 747 243 254 0 0 chr3 21347687 21347742 -138252041 - MER117 DNA MER1_type -96 101 47 4 747 224 342 134 20 chr3 21347872 21348021 -138251762 - ID_B1 SINE B4 -40 184 19 4 747 1054 90 13 40 chr3 21349028 21349178 -138250605 - B1_Mus2 SINE Alu 0 147 2 4 747 8573 39 1 5 chr3 21349188 21350900 -138248883 - L1Md_F3 LINE L1 -13 6571 4867 4 747 37848 22 3 8 chr3 21350897 21356110 -138243673 + L1Md_A LINE L1 409 5586 -297 4 747 8957 32 4 0 chr3 21356111 21357102 -138242681 + L1Md_A LINE L1 5588 6582 0 4 747 192 77 0 0 chr3 21357224 21357250 -138242533 + (A)n Simple_repeat Simple_repeat 1 26 0 4 747 2493 63 3 0 chr3 21357250 21357568 -138242215 - L1Md_F3 LINE L1 -1007 4876 4558 4 747 1286 186 14 164 chr3 21357994 21358193 -138241590 + RMER17C LTR ERVK 1 180 -230 4 747 837 99 0 0 chr3 21358193 21358314 -138241469 + (TTC)n Simple_repeat Simple_repeat 3 123 0 4 747 1286 186 14 164 chr3 21358314 21358552 -138241231 + RMER17C LTR ERVK 181 372 -38 4 747 2045 154 0 10 chr3 21358552 21358866 -138240917 - RLTR10E LTR ERVK 0 311 1 4 747 1415 154 25 92 chr3 21359025 21359340 -138240443 + RMER17C-int LTR ERVK 228 521 -2717 4 747 324 250 41 124 chr3 21359336 21359490 -138240293 + RMER17C-int LTR ERVK 464 599 -2639 4 747 252 0 0 0 chr3 21359490 21359518 -138240265 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 4 747 324 250 41 124 chr3 21359518 21359532 -138240251 + RMER17C-int LTR ERVK 600 617 -2621 4 747 2473 88 153 0 chr3 21359535 21359954 -138239829 + RLTR47_MM LTR ERV1 1 483 -49 4 747 3964 157 59 41 chr3 21360483 21361262 -138238521 + RMER17C-int LTR ERVK 1112 1904 -1334 4 747 1025 131 6 19 chr3 21361254 21361410 -138238373 + RMER17C-int LTR ERVK 2075 2228 -1010 4 747 1013 269 101 37 chr3 21361602 21361950 -138237833 + ORR1D2 LTR MaLR 1 370 0 4 747 23 33 0 0 chr3 21362039 21362069 -138237714 + AT_rich Low_complexity Low_complexity 1 30 0 4 747 420 20 0 0 chr3 21362113 21362162 -138237621 + (TC)n Simple_repeat Simple_repeat 1 49 0 4 747 489 76 0 0 chr3 21362162 21362227 -138237556 + (CA)n Simple_repeat Simple_repeat 1 66 0 4 747 1646 146 83 107 chr3 21362276 21362651 -138237132 - ORR1B1 LTR MaLR -2 392 27 4 747 1543 260 52 8 chr3 21363565 21363953 -138235830 - MTD LTR MaLR -14 405 1 4 747 275 89 0 43 chr3 21363958 21364005 -138235778 + B4 SINE B4 42 86 -206 4 747 490 244 62 121 chr3 21364024 21364248 -138235535 + B3 SINE B2 1 211 -5 4 747 932 271 10 14 chr3 21364274 21364486 -138235297 + B4 SINE B4 66 292 0 4 93 756 289 58 46 chr3 21364550 21364898 -138234885 + MLT1A0 LTR MaLR 9 360 -5 4 748 2368 181 31 42 chr3 21365222 21365701 -138234082 + RLTR20B1 LTR ERVK 1 474 -89 4 748 288 111 0 0 chr3 21365701 21365755 -138234028 + (TC)n Simple_repeat Simple_repeat 1 54 0 4 748 441 0 0 0 chr3 21365755 21365804 -138233979 + (TG)n Simple_repeat Simple_repeat 2 50 0 4 748 279 318 22 11 chr3 21365804 21365893 -138233890 + RLTR20B1 LTR ERVK 467 556 -4 4 748 1431 65 32 16 chr3 21366192 21366381 -138233402 - B2_Mm1t SINE B2 -1 192 1 4 748 990 280 64 49 chr3 21366768 21367095 -138232688 + MTEa LTR MaLR 22 353 -26 4 748 232 290 158 12 chr3 21367098 21367269 -138232514 - Arthur1 DNA Tip100 -96 3851 3656 4 748 247 300 101 43 chr3 21367350 21367538 -138232245 - Arthur1 DNA Tip100 -452 3495 3297 4 748 284 346 30 30 chr3 21367537 21367671 -138232112 - Arthur1 DNA Tip100 -3306 641 508 4 748 1316 260 72 17 chr3 21367698 21368046 -138231737 + MTE2b LTR MaLR 12 378 -1 4 748 180 0 0 0 chr3 21368487 21368507 -138231276 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 4 748 248 77 26 0 chr3 21368892 21368931 -138230852 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 4 748 618 126 0 0 chr3 21369234 21369337 -138230446 + (TC)n Simple_repeat Simple_repeat 1 103 0 4 748 702 266 83 29 chr3 21369408 21369613 -138230170 - B3 SINE B2 0 216 1 4 748 295 320 31 0 chr3 21369841 21369938 -138229845 - Lx8 LINE L1 -245 7228 7129 4 748 569 226 133 0 chr3 21369986 21370167 -138229616 + Lx6 LINE L1 7245 7449 -11 4 748 404 37 0 18 chr3 21370196 21370251 -138229532 + (TG)n Simple_repeat Simple_repeat 2 55 0 4 748 529 272 164 33 chr3 21370253 21370405 -138229378 - B3A SINE B2 -25 173 2 4 748 436 301 207 26 chr3 21370526 21371136 -138228647 - L1MC4 LINE L1 -202 7840 7121 4 748 722 259 221 30 chr3 21371366 21371511 -138228272 - MTE-int LTR MaLR -174 1406 1256 4 748 4422 49 62 9 chr3 21371511 21372043 -138227740 + LTRIS2 LTR ERV1 5 564 0 4 748 722 259 221 30 chr3 21372043 21372227 -138227556 - MTE-int LTR MaLR -325 1255 1014 4 748 223 174 0 0 chr3 21372708 21372780 -138227003 + T-rich Low_complexity Low_complexity 1 72 0 4 748 1207 88 0 0 chr3 21372782 21372929 -138226854 - B1_Mus1 SINE Alu 0 148 2 4 748 953 144 0 0 chr3 21373094 21373240 -138226543 + B2_Mm2 SINE B2 16 161 -34 4 748 180 0 0 0 chr3 21373240 21373260 -138226523 + (TAAA)n Simple_repeat Simple_repeat 3 22 0 5 748 302 300 130 0 chr3 21373394 21373494 -138226289 - L1M5 LINE L1 -395 5729 5617 5 748 23 54 0 0 chr3 21373752 21373789 -138225994 + AT_rich Low_complexity Low_complexity 1 37 0 5 748 22 35 0 0 chr3 21374295 21374324 -138225459 + AT_rich Low_complexity Low_complexity 1 29 0 5 748 275 161 18 0 chr3 21374853 21374909 -138224874 + (TAGA)n Simple_repeat Simple_repeat 1 57 0 5 748 234 0 0 0 chr3 21375375 21375401 -138224382 + (TG)n Simple_repeat Simple_repeat 2 27 0 5 748 2506 28 14 14 chr3 21375708 21375996 -138223787 - L1Md_F2 LINE L1 -5 6577 6290 5 748 510 335 19 96 chr3 21377272 21377480 -138222303 + B4 SINE B4 63 254 -38 5 748 216 0 0 0 chr3 21377753 21377777 -138222006 + (T)n Simple_repeat Simple_repeat 1 24 0 5 748 203 291 0 0 chr3 21378763 21378818 -138220965 + A-rich Low_complexity Low_complexity 1 55 0 5 748 795 232 113 0 chr3 21378897 21379082 -138220701 + ID_B1 SINE B4 2 207 -17 5 748 687 281 78 15 chr3 21379656 21379862 -138219921 - ID_B1 SINE B4 -3 221 3 5 748 901 336 18 76 chr3 21379882 21380340 -138219443 + MER31A LTR ERV1 33 463 -22 5 748 1290 278 30 52 chr3 21380476 21380841 -138218942 - ORR1E LTR MaLR -2 357 1 5 748 383 227 12 18 chr3 21381005 21381171 -138218612 + (CATATA)n Simple_repeat Simple_repeat 2 166 0 5 748 204 40 0 0 chr3 21381188 21381213 -138218570 + (CATA)n Simple_repeat Simple_repeat 4 28 0 5 748 1292 274 32 35 chr3 21381228 21381572 -138218211 + ORR1D2 LTR MaLR 1 343 -27 5 748 462 222 13 160 chr3 21383557 21383707 -138216076 + B1F SINE Alu 1 128 -21 5 748 943 182 14 0 chr3 21384399 21384542 -138215241 - B1_Mur2 SINE Alu 0 149 5 5 748 866 322 34 10 chr3 21384553 21384851 -138214932 + RCHARR1 DNA MER1_type 4 308 -666 5 748 1269 264 110 16 chr3 21384881 21385428 -138214355 + RCHARR1 DNA MER1_type 376 973 -1 5 748 198 71 0 0 chr3 21385492 21385520 -138214263 + (A)n Simple_repeat Simple_repeat 1 28 0 5 748 252 0 0 0 chr3 21385912 21385940 -138213843 + (A)n Simple_repeat Simple_repeat 1 28 0 5 748 1071 283 71 57 chr3 21386829 21386886 -138212897 + MTE2b LTR MaLR 1 61 -318 5 748 1204 28 0 20 chr3 21386886 21387086 -138212697 + L1Md_F2 LINE L1 6420 6582 0 5 748 1071 283 71 57 chr3 21387086 21387392 -138212391 + MTE2b LTR MaLR 62 372 -7 5 748 1131 80 0 0 chr3 21387393 21387530 -138212253 + B1_Mm SINE Alu 2 138 -9 5 748 342 0 0 0 chr3 21387561 21387599 -138212184 + (GAAAA)n Simple_repeat Simple_repeat 2 39 0 5 748 276 289 45 38 chr3 21387696 21387829 -138211954 + L1MEc LINE L1 135 268 -6132 5 748 954 206 119 12 chr3 21387940 21388191 -138211592 + MTEb LTR MaLR 102 379 0 5 748 189 152 28 75 chr3 21388233 21388340 -138211443 + (CAGAGA)n Simple_repeat Simple_repeat 4 105 0 5 748 349 362 81 0 chr3 21388534 21388708 -138211075 + MER58A DNA MER1_type 11 198 -26 5 748 239 351 43 75 chr3 21388745 21388826 -138210957 + L1MEc LINE L1 599 682 -5718 5 748 3551 23 2 0 chr3 21388826 21389221 -138210562 - MTA_Mm LTR MaLR 0 396 1 5 748 239 351 43 75 chr3 21389221 21389327 -138210456 + L1MEc LINE L1 683 780 -5620 5 748 26 30 0 0 chr3 21389328 21389361 -138210422 + AT_rich Low_complexity Low_complexity 1 33 0 5 748 492 290 77 93 chr3 21389423 21389695 -138210088 + B4A SINE B4 1 282 -10 5 748 216 0 0 0 chr3 21389905 21389929 -138209854 + (GA)n Simple_repeat Simple_repeat 2 25 0 5 748 267 31 0 0 chr3 21389929 21389960 -138209823 + (TG)n Simple_repeat Simple_repeat 2 33 0 5 748 474 230 117 15 chr3 21389963 21390100 -138209683 - B3A SINE B2 -46 152 2 5 748 284 0 0 27 chr3 21390101 21390138 -138209645 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 5 748 263 283 53 46 chr3 21390834 21390986 -138208797 - L1MCc LINE L1 -6251 172 20 5 748 439 278 153 0 chr3 21391290 21391466 -138208317 - RMER15 LTR ERVL -37 538 336 5 748 344 258 195 19 chr3 21392129 21392283 -138207500 + B3A SINE B2 1 181 -17 5 748 305 222 264 11 chr3 21393246 21393337 -138206446 + PB1D10 SINE Alu 3 116 -1 5 748 219 370 12 0 chr3 21393358 21393482 -138206301 - MIRb SINE MIR -86 176 49 5 748 495 0 0 0 chr3 21394999 21395054 -138204729 + (TC)n Simple_repeat Simple_repeat 2 56 0 5 748 387 0 0 0 chr3 21395055 21395098 -138204685 + (TG)n Simple_repeat Simple_repeat 2 44 0 5 748 645 303 126 0 chr3 21395394 21395648 -138204135 - B4A SINE B4 -6 286 1 5 748 1527 279 60 34 chr3 21397657 21399115 -138200668 + RMER1A Other Other 1 479 -587 5 748 3750 192 63 1 chr3 21399084 21399794 -138199989 + RMER1A Other Other 276 1029 -1 5 748 22 0 0 0 chr3 21399805 21399827 -138199956 + AT_rich Low_complexity Low_complexity 1 22 0 5 748 200 336 0 50 chr3 21401690 21401740 -138198043 + polypyrimidine Low_complexity Low_complexity 68 113 0 5 748 402 21 0 0 chr3 21401740 21401787 -138197996 + (TC)n Simple_repeat Simple_repeat 2 48 0 5 748 210 304 12 25 chr3 21401787 21401870 -138197913 + CT-rich Low_complexity Low_complexity 1 81 0 5 748 231 250 0 51 chr3 21401789 21401848 -138197935 + C-rich Low_complexity Low_complexity 2 57 0 5 748 7436 180 26 33 chr3 21401872 21403476 -138196307 - Lx4B LINE L1 -2 7056 5454 5 748 2438 109 161 4 chr3 21403476 21403936 -138195847 - RLTR47_MM LTR ERV1 0 532 1 5 748 446 356 11 18 chr3 21404035 21404307 -138195476 - MuRRS4-int LTR ERV1 -131 4932 4663 5 748 1865 258 15 2 chr3 21405141 21405595 -138194188 - MuRRS4-int LTR ERV1 -1049 4014 3555 5 748 464 351 72 36 chr3 21405968 21406414 -138193369 - RLTR4_MM-int LTR ERV1 -3170 4431 3970 5 748 793 323 97 75 chr3 21406470 21407693 -138192090 - MuRRS4-int LTR ERV1 -5243 2535 1287 5 748 459 298 35 48 chr3 21408169 21408430 -138191353 - MuRRS4-int LTR ERV1 -3788 902 526 5 748 2326 125 136 0 chr3 21408798 21409261 -138190522 - RLTR47_MM LTR ERV1 -6 526 1 5 748 8930 133 49 14 chr3 21409261 21410058 -138189725 - L1_Mur2 LINE L1 -420 5457 4633 5 748 228 35 0 0 chr3 21410058 21410087 -138189696 + (TTG)n Simple_repeat Simple_repeat 2 30 0 5 748 8930 133 49 14 chr3 21410087 21410828 -138188955 - L1_Mur2 LINE L1 -1245 4632 3865 5 748 596 334 25 21 chr3 21411340 21411645 -138188138 - RMER19C LTR ERVK -126 485 220 5 748 40437 27 1 6 chr3 21411716 21417899 -138181884 - L1Md_A LINE L1 0 6582 441 5 748 1740 204 7 7 chr3 21417907 21418287 -138181496 - L1M4c LINE L1 -3497 2885 2461 5 748 5001 113 37 1 chr3 21418297 21419025 -138180758 - Lx LINE L1 -4 6650 5897 5 748 4921 159 1 0 chr3 21419025 21419844 -138179939 + L1_Mur2 LINE L1 5058 5877 0 5 748 3246 183 22 27 chr3 21419843 21420581 -138179202 - L1M4c LINE L1 -3636 2477 1273 5 748 466 336 0 27 chr3 21421483 21421630 -138178153 + B3A SINE B2 20 162 -36 5 748 2821 30 108 0 chr3 21421876 21422247 -138177536 + IAPLTR2a LTR ERVK 1 411 0 5 748 517 335 54 0 chr3 21422389 21422556 -138177227 - B3A SINE B2 -22 176 1 5 748 803 307 38 8 chr3 21422956 21423222 -138176561 - B4 SINE B4 -16 276 3 5 748 398 271 195 39 chr3 21423397 21423654 -138176129 + LTR88b LTR Gypsy? 30 326 -511 5 748 491 199 76 31 chr3 21425204 21425354 -138174429 + MTD LTR MaLR 3 147 -260 5 748 318 214 157 39 chr3 21425648 21425750 -138174033 + B4A SINE B4 108 221 -71 5 748 459 313 88 16 chr3 21426088 21426270 -138173513 + B3A SINE B2 4 198 0 5 748 3771 114 40 33 chr3 21426284 21426864 -138172919 + MT2B2 LTR ERVL 1 584 0 5 748 366 295 9 9 chr3 21427493 21427599 -138172184 - B4A SINE B4 0 292 187 5 748 855 211 111 64 chr3 21427757 21428055 -138171728 - RLTR11A LTR ERVK -201 327 16 5 748 346 312 78 63 chr3 21428090 21428360 -138171423 - B4A SINE B4 -15 277 4 5 748 23 54 0 0 chr3 21428854 21428891 -138170892 + AT_rich Low_complexity Low_complexity 1 37 0 5 748 697 259 49 15 chr3 21430412 21430616 -138169167 + Lx5 LINE L1 6826 7036 -14 5 748 192 97 0 0 chr3 21430616 21430647 -138169136 + (TTAA)n Simple_repeat Simple_repeat 3 33 0 5 748 1816 138 4 187 chr3 21431444 21431926 -138167857 - RMER10B LTR ERVL 0 398 5 5 748 274 261 146 14 chr3 21431964 21432108 -138167675 - RMER17C-int LTR ERVK -86 3152 2990 5 748 523 250 79 70 chr3 21432183 21432424 -138167359 - RMER17C-int LTR ERVK -364 2874 2632 5 748 2037 197 71 54 chr3 21432593 21433129 -138166654 - RLTR19-int LTR ERVK -3130 3007 2463 5 748 2100 140 51 38 chr3 21433731 21434124 -138165659 - RMER10B LTR ERVL 0 398 1 5 748 351 125 0 0 chr3 21434459 21434531 -138165252 + (T)n Simple_repeat Simple_repeat 1 72 0 5 748 331 271 18 27 chr3 21434531 21434641 -138165142 - PB1D10 SINE Alu 0 117 9 5 748 1212 48 0 0 chr3 21435844 21435990 -138163793 + B1_Mus2 SINE Alu 2 147 0 5 748 1404 62 45 0 chr3 21436342 21436521 -138163262 - B2_Mm1a SINE B2 -5 188 2 5 748 340 235 32 41 chr3 21437183 21437293 -138162490 + B1F1 SINE Alu 39 149 0 5 748 638 247 127 34 chr3 21439171 21439376 -138160407 - ID_B1 SINE B4 0 224 1 5 748 458 46 15 0 chr3 21439505 21439570 -138160213 + (CA)n Simple_repeat Simple_repeat 1 66 0 5 748 303 28 0 0 chr3 21439571 21439607 -138160176 + (GA)n Simple_repeat Simple_repeat 2 37 0 5 748 3381 99 2 35 chr3 21439760 21440251 -138159532 + MT2C_Mm LTR ERVL 1 475 0 5 748 1170 51 0 0 chr3 21441456 21441594 -138158189 + B1_Mus1 SINE Alu 1 138 -10 5 748 261 0 0 0 chr3 21441594 21441623 -138158160 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 5 748 520 323 39 19 chr3 21441623 21441828 -138157955 - ID_B1 SINE B4 -14 210 2 5 748 21 0 0 0 chr3 21442205 21442226 -138157557 + AT_rich Low_complexity Low_complexity 1 21 0 5 748 297 0 0 0 chr3 21443768 21443801 -138155982 + (CA)n Simple_repeat Simple_repeat 1 33 0 5 748 582 261 85 0 chr3 21443897 21444027 -138155756 + B1F1 SINE Alu 9 149 0 5 748 2478 164 60 2 chr3 21444208 21444677 -138155106 - RLTR28 LTR ERVL -26 498 3 5 748 804 275 184 0 chr3 21445843 21446076 -138153707 - B4A SINE B4 -9 283 8 5 748 239 288 55 46 chr3 21446096 21446205 -138153578 - L1M3 LINE L1 -604 5585 5476 6 748 189 282 192 0 chr3 21446254 21446332 -138153451 + L2c LINE L2 3241 3333 -54 6 748 855 263 29 14 chr3 21446508 21446716 -138153067 - MTEb LTR MaLR -66 313 103 6 748 568 296 112 32 chr3 21446744 21447027 -138152756 + L1MA4 LINE L1 4620 4944 -1199 6 748 220 307 119 0 chr3 21447040 21447141 -138152642 + RSINE1 SINE B4 53 165 0 6 748 717 270 98 61 chr3 21447150 21447477 -138152306 + L1MA4 LINE L1 5602 5940 -360 6 748 183 80 0 0 chr3 21447724 21447749 -138152034 + (TTTTC)n Simple_repeat Simple_repeat 5 29 0 6 748 631 250 13 17 chr3 21447750 21447903 -138151880 - ID_B1 SINE B4 -46 246 94 6 748 332 305 54 47 chr3 21448353 21448501 -138151282 + MTEa LTR MaLR 230 378 -1 6 748 221 286 0 0 chr3 21449343 21449399 -138150384 + (TA)n Simple_repeat Simple_repeat 1 56 0 6 748 470 259 176 0 chr3 21449594 21449725 -138150058 + ID_B1 SINE B4 70 223 -1 6 748 360 303 59 68 chr3 21450291 21450468 -138149315 + B4 SINE B4 36 258 -34 6 748 405 0 0 0 chr3 21450470 21450515 -138149268 + (CA)n Simple_repeat Simple_repeat 1 45 0 6 748 238 428 76 0 chr3 21450909 21451040 -138148743 - RSINE1 SINE B4 -13 152 12 6 748 243 39 57 38 chr3 21451047 21451100 -138148683 + (CAAAAA)n Simple_repeat Simple_repeat 1 54 0 6 748 224 313 11 78 chr3 21451158 21451248 -138148535 - B1F SINE Alu -46 103 20 6 748 214 275 0 0 chr3 21451215 21451255 -138148528 - PB1D10 SINE Alu -65 52 13 6 748 279 0 0 0 chr3 21451402 21451433 -138148350 + (TG)n Simple_repeat Simple_repeat 1 31 0 6 748 506 316 135 33 chr3 21451546 21451791 -138147992 + B4A SINE B4 2 271 -21 6 748 225 94 0 0 chr3 21451850 21451882 -138147901 + (GGGA)n Simple_repeat Simple_repeat 4 35 0 6 748 191 369 71 18 chr3 21451934 21452047 -138147736 + MIR SINE MIR 43 161 -101 6 748 776 225 153 16 chr3 21453110 21453300 -138146483 + B3 SINE B2 1 216 0 6 748 944 243 52 0 chr3 21453344 21453554 -138146229 + ID_B1 SINE B4 1 221 -3 6 748 548 95 12 0 chr3 21454419 21454503 -138145280 + (TA)n Simple_repeat Simple_repeat 1 85 0 6 748 4244 42 17 0 chr3 21454618 21455100 -138144683 - L1Md_F2 LINE L1 -2 6580 6091 6 748 1608 212 22 16 chr3 21455154 21455470 -138144313 - MTC LTR MaLR 0 421 104 6 748 405 0 0 0 chr3 21455476 21455521 -138144262 + (TG)n Simple_repeat Simple_repeat 2 46 0 6 748 583 216 55 16 chr3 21455542 21455669 -138144114 + ID_B1 SINE B4 88 219 -5 6 748 413 283 134 141 chr3 21456430 21456646 -138143137 - B4 SINE B4 -14 278 48 6 748 189 74 0 0 chr3 21456646 21456673 -138143110 + (TTG)n Simple_repeat Simple_repeat 1 27 0 6 748 413 283 134 141 chr3 21456673 21456686 -138143097 - B4 SINE B4 -245 47 47 6 748 222 37 0 0 chr3 21456686 21456713 -138143070 + (GTTTG)n Simple_repeat Simple_repeat 2 28 0 6 748 413 283 134 141 chr3 21456713 21456758 -138143025 - B4 SINE B4 -245 47 5 6 748 461 235 16 32 chr3 21457897 21458020 -138141763 + RSINE1 SINE B4 45 165 0 6 748 253 387 0 70 chr3 21458560 21458660 -138141123 + RSINE1 SINE B4 53 145 -20 6 748 21 0 0 0 chr3 21458716 21458737 -138141046 + AT_rich Low_complexity Low_complexity 1 21 0 6 748 1002 302 25 7 chr3 21458864 21459147 -138140636 - B4 SINE B4 -4 288 1 6 748 873 264 75 47 chr3 21460343 21460661 -138139122 + MTEa LTR MaLR 3 329 -50 6 748 214 234 0 60 chr3 21460794 21460844 -138138939 + polypurine Low_complexity Low_complexity 2 48 0 6 748 415 299 134 0 chr3 21460905 21461032 -138138751 + ID_B1 SINE B4 77 220 -4 6 748 662 278 15 0 chr3 21461128 21461261 -138138522 + RSINE1 SINE B4 11 145 -20 6 748 222 37 0 0 chr3 21461264 21461291 -138138492 + (CA)n Simple_repeat Simple_repeat 2 28 0 6 748 243 0 0 0 chr3 21462860 21462887 -138136896 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 6 748 549 0 0 0 chr3 21464094 21464155 -138135628 + (GA)n Simple_repeat Simple_repeat 1 61 0 6 748 394 209 127 37 chr3 21464173 21464307 -138135476 + B1F SINE Alu 3 148 -1 6 748 228 277 0 15 chr3 21465223 21465289 -138134494 - RMER15 LTR ERVL -108 467 403 6 748 278 268 24 12 chr3 21465299 21465382 -138134401 - Lx8 LINE L1 -217 7256 7173 6 748 573 266 62 20 chr3 21465795 21465941 -138133842 + ID_B1 SINE B4 1 152 -72 6 748 594 28 0 0 chr3 21466059 21466131 -138133652 + (TG)n Simple_repeat Simple_repeat 1 72 0 6 748 894 244 30 5 chr3 21466189 21466387 -138133396 + B3 SINE B2 2 204 -12 6 748 283 261 19 132 chr3 21466546 21466652 -138133131 - PB1D10 SINE Alu -8 109 16 6 748 501 248 153 37 chr3 21466562 21466725 -138133058 - ID_B1 SINE B4 -42 182 1 6 748 466 307 30 6 chr3 21466728 21466895 -138132888 + L1MC3 LINE L1 7010 7180 -605 6 748 313 319 35 9 chr3 21467270 21467384 -138132399 + L1MC3 LINE L1 7507 7623 -162 6 748 2127 187 65 10 chr3 21467394 21467793 -138131990 + MTC LTR MaLR 1 421 0 6 748 332 276 39 16 chr3 21468134 21468263 -138131520 + L1MC3 LINE L1 7653 7784 -1 6 748 393 304 13 7 chr3 21468289 21468438 -138131345 + GA-rich Low_complexity Low_complexity 2 151 0 6 748 415 296 133 0 chr3 21469831 21469966 -138129817 + ID_B1 SINE B4 5 157 -67 6 748 834 311 33 22 chr3 21469972 21470248 -138129535 + B4 SINE B4 12 290 -2 6 748 402 181 27 14 chr3 21470307 21470380 -138129403 + ID_B1 SINE B4 141 214 -10 6 748 251 256 57 23 chr3 21470650 21470738 -138129045 - MIR SINE MIR -101 161 71 6 748 223 127 16 16 chr3 21471423 21471487 -138128296 + T-rich Low_complexity Low_complexity 6 69 0 6 748 743 85 0 28 chr3 21471489 21471598 -138128185 - B1_Mus2 SINE Alu 0 147 42 6 748 294 182 0 18 chr3 21471588 21471644 -138128139 - MTC LTR MaLR -366 55 1 6 748 230 143 0 39 chr3 21471928 21471979 -138127804 + (TTTG)n Simple_repeat Simple_repeat 1 49 0 6 748 1014 224 97 4 chr3 21471979 21472226 -138127557 + RLTR20C LTR ERVK 95 364 -170 6 748 256 204 0 18 chr3 21472232 21472287 -138127496 - RLTR20B2 LTR ERVK -132 428 375 6 748 951 252 29 19 chr3 21472285 21472495 -138127288 + B4 SINE B4 5 216 -76 6 748 395 210 37 57 chr3 21472506 21472626 -138127157 - RLTR20A LTR ERVK 0 563 441 6 748 24 0 0 0 chr3 21472641 21472665 -138127118 + AT_rich Low_complexity Low_complexity 1 24 0 6 748 549 319 0 12 chr3 21474030 21474195 -138125588 - MTEa LTR MaLR -2 377 215 6 748 1506 231 62 53 chr3 21474195 21474227 -138125556 + ORR1D1 LTR MaLR 1 32 -342 6 748 1119 75 8 0 chr3 21474227 21474361 -138125422 + B1_Mus1 SINE Alu 2 136 -12 6 748 798 11 0 0 chr3 21474361 21474452 -138125331 + (GAAA)n Simple_repeat Simple_repeat 4 94 0 6 748 1506 231 62 53 chr3 21474452 21474775 -138125008 + ORR1D1 LTR MaLR 33 359 -15 6 748 735 290 46 102 chr3 21474949 21475233 -138124550 + B4 SINE B4 2 269 -23 6 748 441 36 0 0 chr3 21475235 21475290 -138124493 + (CA)n Simple_repeat Simple_repeat 2 56 0 6 748 369 0 0 0 chr3 21475291 21475332 -138124451 + (TA)n Simple_repeat Simple_repeat 1 41 0 6 748 711 98 0 0 chr3 21475332 21475454 -138124329 + (CAGAGA)n Simple_repeat Simple_repeat 4 126 0 6 748 539 41 0 27 chr3 21475469 21475544 -138124239 + (GGGGA)n Simple_repeat Simple_repeat 3 75 0 6 748 651 171 32 70 chr3 21475619 21475776 -138124007 - Lx6 LINE L1 -3 7457 7307 6 748 1820 256 82 92 chr3 21475775 21477176 -138122607 - RMER1A Other Other -1 1029 1 6 748 1473 224 14 0 chr3 21477427 21477704 -138122079 - Lx6 LINE L1 -119 7341 7061 6 748 824 304 30 32 chr3 21477702 21478107 -138121676 - L1_Mur3 LINE L1 -7263 449 46 6 748 2022 170 64 9 chr3 21478355 21478699 -138121084 - ORR1B2 LTR MaLR 0 367 5 6 748 360 325 47 28 chr3 21478913 21479125 -138120658 + L1ME1 LINE L1 5851 6066 -113 6 748 640 296 76 107 chr3 21479182 21479276 -138120507 + B4 SINE B4 3 96 -196 6 748 525 248 261 0 chr3 21479276 21479437 -138120346 + B3 SINE B2 1 203 -13 6 748 640 296 76 107 chr3 21479437 21479633 -138120150 + B4 SINE B4 97 284 -8 6 748 234 333 29 118 chr3 21480020 21480122 -138119661 + LTR16A1 LTR ERVL 133 225 -231 6 748 554 128 0 11 chr3 21480226 21480321 -138119462 + (TCC)n Simple_repeat Simple_repeat 3 96 0 6 748 2084 150 28 3 chr3 21480683 21481037 -138118746 + RLTR14 LTR ERV1 17 379 -3 6 748 1447 247 146 29 chr3 21481037 21481382 -138118401 + RLTR14-int LTR ERV1 1 386 -4931 6 748 504 45 0 0 chr3 21481382 21481449 -138118334 + (TG)n Simple_repeat Simple_repeat 2 68 0 6 748 1509 221 228 67 chr3 21481449 21482062 -138117721 + RLTR14-int LTR ERV1 387 1098 -4219 6 748 3553 30 2 8 chr3 21483083 21483480 -138116303 - MTA_Mm LTR MaLR 0 396 2 6 748 464 250 59 59 chr3 21483499 21483703 -138116080 + RodERV21-int LTR ERV1 3359 3562 -1429 6 748 1256 267 29 29 chr3 21483702 21484087 -138115696 + RodERV21-int LTR ERV1 4409 4793 -198 6 748 283 315 101 16 chr3 21484142 21484271 -138115512 + RMER4B LTR ERVK 347 486 -99 6 748 555 16 0 0 chr3 21484453 21484517 -138115266 + (TC)n Simple_repeat Simple_repeat 2 65 0 6 748 427 121 209 0 chr3 21484741 21484832 -138114951 + RLTR14-int LTR ERV1 1285 1394 -3923 6 748 1387 183 8 21 chr3 21485290 21485524 -138114259 + RLTR14-int LTR ERV1 1389 1619 -3698 6 748 7963 160 135 24 chr3 21485513 21487983 -138111800 + RLTR14-int LTR ERV1 2576 5317 0 6 748 758 208 6 6 chr3 21488003 21488163 -138111620 + RLTR14 LTR ERV1 3 162 -220 6 748 1968 79 0 0 chr3 21488252 21488506 -138111277 - L1_Mm LINE L1 -338 5545 5292 6 748 6158 29 6 4 chr3 21488510 21489203 -138110580 - L1Md_F2 LINE L1 -6 6576 5883 6 748 7511 91 10 2 chr3 21489206 21490329 -138109454 - L1_Mus3 LINE L1 -42 6596 5466 6 748 5101 195 122 8 chr3 21490867 21491966 -138107817 - Lx5 LINE L1 0 7050 5821 6 748 21 0 0 0 chr3 21492080 21492101 -138107682 + AT_rich Low_complexity Low_complexity 1 21 0 6 748 195 42 0 0 chr3 21492289 21492313 -138107470 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 6 748 5890 162 50 5 chr3 21492314 21492420 -138107363 - Lx LINE L1 -16 6638 6534 6 748 450 0 0 0 chr3 21492420 21492470 -138107313 + (CA)n Simple_repeat Simple_repeat 2 51 0 6 93 15007 149 18 128 chr3 21492470 21496325 -138103458 - Lx LINE L1 -121 6533 3134 6 749 234 0 0 0 chr3 21496325 21496351 -138103432 + (TTG)n Simple_repeat Simple_repeat 2 27 0 6 749 15007 146 12 152 chr3 21496351 21496629 -138103154 - Lx LINE L1 -2750 3133 2854 6 749 378 250 25 213 chr3 21496671 21496915 -138102868 + B3A SINE B2 1 198 0 7 749 740 272 41 131 chr3 21498354 21498909 -138100874 + RLTR18 LTR ERVK 10 496 -16 7 749 482 322 40 40 chr3 21499689 21499915 -138099868 - RMER15 LTR ERVL -13 562 337 7 749 1645 26 0 5 chr3 21500139 21500332 -138099451 + B2_Mm1a SINE B2 2 193 0 1 749 270 56 0 0 chr3 21500375 21500411 -138099372 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 2 749 348 24 0 0 chr3 21500502 21500543 -138099240 + (TTC)n Simple_repeat Simple_repeat 2 42 0 3 749 342 0 0 0 chr3 21500597 21500635 -138099148 + (TG)n Simple_repeat Simple_repeat 2 39 0 4 749 650 286 14 58 chr3 21500644 21500867 -138098916 - ID_B1 SINE B4 -10 214 2 5 749 450 0 0 0 chr3 21500892 21500942 -138098841 + (TC)n Simple_repeat Simple_repeat 2 51 0 6 749 742 291 79 16 chr3 21501143 21501420 -138098363 - ORR1D2 LTR MaLR -82 285 4 7 749 683 312 0 0 chr3 21502460 21502617 -138097166 + B3A SINE B2 3 159 -39 8 749 408 88 0 0 chr3 21502620 21502677 -138097106 + (CA)n Simple_repeat Simple_repeat 1 57 0 9 749 1554 195 91 6 chr3 21503367 21503551 -138096232 - ORR1C2 LTR MaLR 0 384 173 1 749 186 43 0 0 chr3 21503551 21503574 -138096209 + (GA)n Simple_repeat Simple_repeat 2 24 0 1 749 1554 195 91 6 chr3 21503574 21503739 -138096044 - ORR1C2 LTR MaLR -212 172 6 1 749 224 276 52 0 chr3 21505366 21505424 -138094359 + RSINE1 SINE B4 2 62 -103 1 749 185 0 71 48 chr3 21505425 21505467 -138094316 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 1 749 365 340 10 10 chr3 21505467 21505565 -138094218 + RSINE1 SINE B4 66 163 -2 1 749 457 356 73 6 chr3 21505786 21505964 -138093819 - B4A SINE B4 -13 279 90 1 749 22409 147 18 5 chr3 21506063 21508448 -138091335 + Lx LINE L1 434 2885 -2998 1 749 1301 68 6 0 chr3 21508448 21508625 -138091158 + (GAAA)n Simple_repeat Simple_repeat 3 180 0 1 749 22409 169 25 8 chr3 21508625 21509125 -138090658 + Lx LINE L1 2886 3383 -2500 1 749 2245 121 128 8 chr3 21509125 21509515 -138090268 - RLTR9B LTR ERVK 0 437 1 1 749 22409 157 27 8 chr3 21509515 21512725 -138087058 + Lx LINE L1 3384 6636 -18 1 749 861 131 0 0 chr3 21512752 21512889 -138086894 + L1_Mm LINE L1 4449 4585 -1298 1 749 2078 47 0 4 chr3 21512889 21513147 -138086636 + L1Md_T LINE L1 6326 6582 0 1 749 263 36 52 35 chr3 21513187 21513245 -138086538 + (CAAAA)n Simple_repeat Simple_repeat 2 60 0 2 749 278 214 0 0 chr3 21513245 21513315 -138086468 + L1_Mm LINE L1 4570 4639 -1244 1 749 393 111 13 40 chr3 21513335 21513410 -138086373 + Lx LINE L1 6570 6642 -12 2 749 186 43 0 0 chr3 21513413 21513436 -138086347 + (GAAAA)n Simple_repeat Simple_repeat 2 24 0 2 749 2689 173 62 38 chr3 21513822 21514369 -138085414 - RLTR20B2 LTR ERVK 0 560 1 2 749 12354 79 15 13 chr3 21515919 21518801 -138080982 + Lx3_Mus LINE L1 4104 6990 -19 2 749 201 129 0 0 chr3 21519074 21519105 -138080678 + (CA)n Simple_repeat Simple_repeat 2 32 0 2 749 342 349 30 15 chr3 21519114 21519248 -138080535 + Tigger5 DNA MER2_type 16 151 -2255 2 749 267 357 16 57 chr3 21519296 21519418 -138080365 + Tigger5 DNA MER2_type 2290 2406 0 2 749 375 295 25 51 chr3 21519729 21519886 -138079897 + RSINE1 SINE B4 3 155 -10 2 749 26 30 0 0 chr3 21519906 21519939 -138079844 + AT_rich Low_complexity Low_complexity 1 33 0 2 749 204 189 36 36 chr3 21520085 21520140 -138079643 + T-rich Low_complexity Low_complexity 3 57 0 2 749 248 297 38 38 chr3 21520283 21520388 -138079395 + MIRc SINE MIR 22 126 -142 3 749 638 318 38 35 chr3 21520754 21521073 -138078710 - RLTR15 LTR ERVK -39 320 1 3 749 913 220 33 5 chr3 21521130 21521340 -138078443 - B3 SINE B2 0 216 1 3 749 375 308 40 32 chr3 21521505 21521629 -138078154 + PB1 SINE Alu 3 127 0 3 749 896 87 11 39 chr3 21522070 21522250 -138077533 + (GGGGA)n Simple_repeat Simple_repeat 3 177 0 3 749 730 294 24 47 chr3 21522751 21522961 -138076822 - B4 SINE B4 -5 287 83 3 749 823 285 42 121 chr3 21522961 21523340 -138076443 - MTE2a LTR MaLR -2 377 29 3 749 240 35 0 0 chr3 21523380 21523409 -138076374 + (TTG)n Simple_repeat Simple_repeat 2 30 0 3 749 1069 97 0 0 chr3 21523409 21523548 -138076235 - B1_Mus2 SINE Alu -6 141 3 3 749 287 325 12 0 chr3 21523589 21523672 -138076111 - B4 SINE B4 -208 84 1 3 749 932 349 71 3 chr3 21524076 21524430 -138075353 - MTEa LTR MaLR -1 378 1 3 749 191 32 65 0 chr3 21524714 21524745 -138075038 + (CAAAAA)n Simple_repeat Simple_repeat 2 34 0 4 749 871 225 141 124 chr3 21525633 21525783 -138074000 + MTE2a LTR MaLR 1 121 -258 4 749 483 45 0 29 chr3 21525783 21525867 -138073916 - L1Md_F2 LINE L1 0 6582 6507 4 749 871 225 141 124 chr3 21525867 21525904 -138073879 + MTE2a LTR MaLR 122 180 -199 4 749 2727 95 39 5 chr3 21525904 21526294 -138073489 - RLTR9D LTR ERVK 0 403 1 4 749 871 225 141 124 chr3 21526294 21526474 -138073309 + MTE2a LTR MaLR 181 374 -5 4 749 349 302 23 0 chr3 21526650 21526736 -138073047 + MTD LTR MaLR 124 211 -208 4 749 278 259 154 41 chr3 21526735 21526904 -138072879 - ORR1D1 LTR MaLR -84 290 103 4 749 785 257 14 45 chr3 21527216 21527256 -138072527 - ORR1D1 LTR MaLR -161 213 176 4 749 262 59 38 38 chr3 21527256 21527309 -138072474 + (CAGAGA)n Simple_repeat Simple_repeat 2 54 0 4 749 785 257 14 45 chr3 21527309 21527488 -138072295 - ORR1D1 LTR MaLR -199 175 1 4 749 3349 84 4 4 chr3 21527916 21528392 -138071391 - L1Md_F2 LINE L1 -84 6498 6023 4 749 200 86 0 28 chr3 21528449 21528485 -138071298 + (CA)n Simple_repeat Simple_repeat 2 36 0 4 749 263 357 16 81 chr3 21528530 21528716 -138071067 + MARNA DNA Mariner 285 458 -128 5 749 802 270 44 15 chr3 21528954 21529157 -138070626 + B3 SINE B2 2 210 -6 5 749 3907 275 48 15 chr3 21530065 21530614 -138069169 - Lx8 LINE L1 -2 7471 6896 5 749 1825 177 21 97 chr3 21530614 21531045 -138068738 - RMER10B LTR ERVL 0 398 1 5 749 3907 275 48 15 chr3 21531045 21531084 -138068699 - Lx8 LINE L1 -578 6895 6859 5 749 1007 117 0 6 chr3 21531084 21531247 -138068536 + (GGAAA)n Simple_repeat Simple_repeat 4 165 0 5 749 3907 275 48 15 chr3 21531247 21531900 -138067883 - Lx8 LINE L1 -615 6858 6190 5 749 237 33 0 0 chr3 21532554 21532584 -138067199 + (TC)n Simple_repeat Simple_repeat 1 30 0 5 749 200 31 62 0 chr3 21533329 21533361 -138066422 + (TAAAA)n Simple_repeat Simple_repeat 2 35 0 5 749 393 244 70 0 chr3 21533527 21533613 -138066170 + PB1D7 SINE Alu 10 101 -19 5 749 539 312 13 0 chr3 21533826 21533980 -138065803 + MER57E2 LTR ERV1 82 237 -165 5 749 1508 257 52 16 chr3 21534199 21534642 -138065141 + Lx7 LINE L1 6909 7367 -329 5 749 727 193 0 18 chr3 21534646 21534815 -138064968 + CT-rich Low_complexity Low_complexity 2 167 0 6 749 200 180 0 39 chr3 21534829 21534881 -138064902 + T-rich Low_complexity Low_complexity 1 50 0 6 749 486 0 0 0 chr3 21534942 21534996 -138064787 + (TG)n Simple_repeat Simple_repeat 2 55 0 6 749 700 246 23 6 chr3 21535008 21535180 -138064603 + Lx9 LINE L1 7129 7303 -341 6 749 1691 135 75 99 chr3 21535188 21535550 -138064233 - ORR1B1 LTR MaLR 0 394 42 6 749 544 173 193 0 chr3 21535556 21535757 -138064026 + Lx9 LINE L1 7388 7627 -17 6 749 183 186 0 0 chr3 21535925 21535968 -138063815 + CT-rich Low_complexity Low_complexity 3 45 0 6 749 288 53 0 0 chr3 21536189 21536227 -138063556 + (CA)n Simple_repeat Simple_repeat 2 39 0 6 749 575 266 116 45 chr3 21536944 21537212 -138062571 - B4 SINE B4 -4 288 2 6 749 232 282 176 17 chr3 21537897 21538016 -138061767 - B4A SINE B4 -153 139 2 6 749 324 310 73 73 chr3 21539571 21539707 -138060076 + B3A SINE B2 56 191 -7 6 749 3956 257 93 24 chr3 21540045 21541208 -138058575 + Lx6 LINE L1 6218 7460 0 7 749 830 260 30 90 chr3 21541240 21541608 -138058175 + L1M2 LINE L1 4884 5229 -914 7 749 258 135 0 71 chr3 21541766 21541822 -138057961 + L1M2 LINE L1 5219 5270 -873 7 749 1259 295 25 33 chr3 21541929 21542413 -138057370 - Lx8 LINE L1 -153 7320 6841 7 749 682 289 26 48 chr3 21542401 21542670 -138057113 - Lx8 LINE L1 -1010 6463 6201 7 749 370 335 78 7 chr3 21543141 21543294 -138056489 - MamRep605 Unknown Unknown -255 621 458 7 749 1082 266 82 25 chr3 21543941 21544257 -138055526 + ORR1E LTR MaLR 5 338 -21 7 749 294 50 0 0 chr3 21545225 21545265 -138054518 + (T)n Simple_repeat Simple_repeat 1 40 0 7 749 713 312 108 28 chr3 21546359 21546682 -138053101 - MLT1A0 LTR MaLR -13 352 4 7 749 1877 169 69 12 chr3 21546808 21547196 -138052587 + RLTR20D LTR ERVK 1 398 -107 7 749 216 0 0 0 chr3 21547196 21547220 -138052563 + (TG)n Simple_repeat Simple_repeat 2 25 0 7 749 762 273 107 83 chr3 21547220 21547279 -138052504 + RLTR20D LTR ERVK 399 436 -69 7 749 26 30 0 0 chr3 21548821 21548854 -138050929 + AT_rich Low_complexity Low_complexity 1 33 0 7 749 191 306 0 0 chr3 21549722 21549758 -138050025 - L2b LINE L2 -82 3293 3258 8 749 534 49 37 0 chr3 21550168 21550250 -138049533 + (TA)n Simple_repeat Simple_repeat 2 86 0 8 749 26 30 0 0 chr3 21550309 21550342 -138049441 + AT_rich Low_complexity Low_complexity 1 33 0 8 749 397 244 48 109 chr3 21550715 21550862 -138048921 - MT2A LTR ERVL -48 553 416 8 749 557 294 35 53 chr3 21551179 21551405 -138048378 - RLTR16 LTR ERVK -261 244 23 8 749 578 314 40 60 chr3 21551413 21551714 -138048069 - MT2A LTR ERVL -238 295 1 8 749 240 130 22 0 chr3 21551716 21551762 -138048021 - MTE-int LTR MaLR -2 1578 1532 8 749 6221 198 32 54 chr3 21551762 21553212 -138046571 - MERVL_2A-int LTR ERVL -48 5713 4296 8 749 379 235 0 64 chr3 21553215 21553324 -138046459 - MERVL_2A-int LTR ERVL -2777 2984 2883 8 749 403 164 0 0 chr3 21553325 21553392 -138046391 + MERVL_2A-int LTR ERVL 2770 2836 -2925 8 749 468 256 13 93 chr3 21553392 21553543 -138046240 - MT2B LTR ERVL -296 305 167 8 749 861 104 0 0 chr3 21553430 21553545 -138046238 - B1_Mus2 SINE Alu -32 115 1 8 749 183 42 0 0 chr3 21553556 21553580 -138046203 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 9 749 1228 55 0 0 chr3 21553627 21553773 -138046010 - B1_Mm SINE Alu -1 146 1 9 749 287 346 116 54 chr3 21553842 21554178 -138045605 + ORR1E LTR MaLR 1 357 -2 9 749 201 283 83 83 chr3 21554853 21554928 -138044855 + MIRc SINE MIR 37 117 -151 9 749 1774 189 53 6 chr3 21554928 21555289 -138044494 - ORR1C1 LTR MaLR 0 378 1 9 749 201 283 83 83 chr3 21555289 21555321 -138044462 + MIRc SINE MIR 118 144 -124 9 749 3680 293 59 23 chr3 21556001 21557277 -138042506 - Lx7 LINE L1 -29 7444 6133 9 749 2268 96 15 18 chr3 21557283 21557623 -138042160 - L1_Mus3 LINE L1 0 6638 6300 9 749 22 0 0 0 chr3 21557875 21557897 -138041886 + AT_rich Low_complexity Low_complexity 1 22 0 9 749 638 152 5 33 chr3 21558296 21558480 -138041303 + GA-rich Low_complexity Low_complexity 2 180 0 9 749 643 264 63 9 chr3 21558739 21558961 -138040822 + LTRIS4 LTR ERV1 274 507 0 9 749 327 253 0 108 chr3 21558996 21559098 -138040685 - RMER13A LTR ERVK 0 860 770 1 749 6732 176 32 3 chr3 21559098 21559329 -138040454 + Lx6 LINE L1 4487 4723 -1157 1 749 216 0 0 0 chr3 21559329 21559353 -138040430 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 1 749 6732 176 32 3 chr3 21559353 21560406 -138039377 + Lx6 LINE L1 4724 5807 -73 1 749 1684 145 11 0 chr3 21560411 21560673 -138039110 - Lx5 LINE L1 -485 6565 6301 1 749 9858 20 1 0 chr3 21560675 21562473 -138037310 - L1Md_T LINE L1 0 6582 4783 1 749 918 232 33 66 chr3 21562472 21562716 -138037067 - Lx5 LINE L1 -739 6311 6076 1 749 2338 202 32 26 chr3 21562723 21563191 -138036592 + Lx5 LINE L1 6580 7050 0 1 749 6525 246 26 34 chr3 21563194 21564290 -138035493 + Lx6 LINE L1 5825 6906 -554 1 749 4203 65 40 9 chr3 21564290 21564833 -138034950 + LTRIS2 LTR ERV1 5 564 0 1 749 6525 246 26 34 chr3 21564833 21565373 -138034410 + Lx6 LINE L1 6907 7447 -13 1 749 492 18 0 0 chr3 21566344 21566401 -138033382 + (GGA)n Simple_repeat Simple_repeat 3 59 0 1 749 242 227 30 15 chr3 21568072 21568139 -138031644 + (CATA)n Simple_repeat Simple_repeat 1 68 0 1 749 719 299 73 26 chr3 21568253 21568374 -138031409 + MER31A LTR ERV1 114 242 -243 1 749 734 254 20 15 chr3 21568374 21568570 -138031213 + RMER30 DNA MER1_type 2 198 -4 1 749 719 299 73 26 chr3 21568570 21568750 -138031033 + MER31A LTR ERV1 243 428 -57 1 749 24 32 0 0 chr3 21568863 21568894 -138030889 + AT_rich Low_complexity Low_complexity 1 31 0 1 749 753 12 0 0 chr3 21569817 21569903 -138029880 + (CTG)n Simple_repeat Simple_repeat 1 86 0 1 749 332 288 24 41 chr3 21569939 21570062 -138029721 + RLTR14 LTR ERV1 262 382 0 1 749 180 97 0 0 chr3 21571283 21571314 -138028469 + (C)n Simple_repeat Simple_repeat 1 31 0 1 749 1439 217 78 75 chr3 21572504 21572942 -138026841 + RMER10A LTR ERVL 2 440 -2 1 749 447 336 21 14 chr3 21574496 21574641 -138025142 - RSINE1 SINE B4 -17 148 3 1 749 486 290 21 14 chr3 21574668 21574808 -138024975 + B1_Mur1 SINE Alu 2 142 -7 1 749 258 32 0 0 chr3 21574811 21574842 -138024941 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1 749 186 133 0 0 chr3 21575071 21575101 -138024682 + (TGG)n Simple_repeat Simple_repeat 3 32 0 1 749 1524 135 73 63 chr3 21575110 21575427 -138024356 - ORR1A4 LTR MaLR -7 322 3 1 749 207 0 0 0 chr3 21575427 21575450 -138024333 + (TG)n Simple_repeat Simple_repeat 1 23 0 1 749 509 229 18 0 chr3 21575515 21575624 -138024159 - B3A SINE B2 -86 112 2 1 749 366 317 13 27 chr3 21575654 21575803 -138023980 + B1F SINE Alu 1 147 -2 1 749 214 364 0 25 chr3 21575811 21575890 -138023893 + ID4 SINE ID 6 82 -1 1 749 615 292 101 87 chr3 21576157 21576269 -138023514 - Lx8 LINE L1 -6 7467 7328 1 749 216 0 0 0 chr3 21576269 21576293 -138023490 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 1 749 615 292 101 87 chr3 21576293 21576547 -138023236 - Lx8 LINE L1 -146 7327 7097 1 749 631 320 75 43 chr3 21576597 21576972 -138022811 + Lx8 LINE L1 6700 7086 -387 1 749 244 292 33 93 chr3 21577525 21577676 -138022107 + MLT1B LTR MaLR 168 309 -81 1 749 472 306 60 56 chr3 21577747 21578014 -138021769 - L1M5 LINE L1 -398 5766 5499 1 749 610 177 80 0 chr3 21578705 21578818 -138020965 - MTE2a LTR MaLR -243 136 15 1 749 3918 265 123 38 chr3 21578858 21580080 -138019703 + MTEa-int LTR MaLR 1 1350 -230 1 749 195 100 0 0 chr3 21580080 21580110 -138019673 + (TTGG)n Simple_repeat Simple_repeat 2 31 0 1 749 3918 265 123 38 chr3 21580110 21580329 -138019454 + MTEa-int LTR MaLR 1351 1565 -15 1 749 615 325 112 35 chr3 21580343 21580690 -138019093 + MTEa LTR MaLR 1 374 -5 1 749 495 123 0 0 chr3 21580974 21581055 -138018728 + (TCC)n Simple_repeat Simple_repeat 2 82 0 1 749 229 304 44 15 chr3 21581239 21581376 -138018407 - L1MEc LINE L1 -5624 776 636 1 749 334 298 70 39 chr3 21581669 21581798 -138017985 - L1MEc LINE L1 -6159 241 109 1 749 7886 68 4 4 chr3 21581818 21582843 -138016940 - L1_Mus1 LINE L1 0 6567 5543 1 749 1193 62 0 0 chr3 21582895 21583040 -138016743 + B1_Mm SINE Alu 3 147 0 1 749 387 300 27 0 chr3 21583894 21584004 -138015779 + ID_B1 SINE B4 3 115 -109 1 749 352 219 74 66 chr3 21584084 21584206 -138015577 + MER103 DNA DNA 33 155 -11 1 749 1970 92 3 71 chr3 21584292 21584642 -138015141 - IAPLTR1a_Mm LTR ERVK -11 326 1 1 749 29844 9 1 0 chr3 21584642 21587876 -138011907 - IAPEz-int LTR ERVK 0 6481 3244 1 749 24562 12 12 4 chr3 21587868 21590598 -138009185 - IAPEz-int LTR ERVK -3730 2751 1 1 749 1959 95 3 71 chr3 21590599 21590949 -138008834 - IAPLTR1a_Mm LTR ERVK -11 326 1 1 749 207 262 110 40 chr3 21591021 21591209 -138008574 + MIRc SINE MIR 3 206 -62 1 749 720 281 62 0 chr3 21591319 21591399 -138008384 + ID_B1 SINE B4 3 93 -131 1 749 283 272 106 88 chr3 21591399 21591512 -138008271 + PB1D7 SINE Alu 4 118 -2 1 749 463 291 16 16 chr3 21592478 21592670 -138007113 - MER53 DNA hAT -1 192 1 1 749 263 336 52 7 chr3 21592889 21593024 -138006759 + MIRb SINE MIR 35 175 -93 1 749 211 206 29 14 chr3 21594087 21594156 -138005627 + GA-rich Low_complexity Low_complexity 3 72 0 1 749 645 340 38 116 chr3 21594384 21594677 -138005106 + B4 SINE B4 1 270 -22 1 749 222 171 0 0 chr3 21594914 21594955 -138004828 + (CAA)n Simple_repeat Simple_repeat 2 42 0 1 749 249 323 103 89 chr3 21595028 21595242 -138004541 + B4A SINE B4 2 218 -74 1 749 11677 81 35 7 chr3 21595525 21597365 -138002418 - L1_Mus2 LINE L1 0 6566 4677 1 749 801 0 0 0 chr3 21597365 21597454 -138002329 + (TTAGGG)n Simple_repeat Simple_repeat 2 90 0 1 749 11677 94 8 11 chr3 21597454 21597898 -138001885 - L1_Mus2 LINE L1 -1207 4676 4233 1 749 307 284 0 13 chr3 21598855 21598930 -138000853 + ID_B1 SINE B4 134 207 -17 1 749 314 23 23 0 chr3 21598951 21598994 -138000789 + (TG)n Simple_repeat Simple_repeat 1 44 0 1 749 819 277 0 45 chr3 21599885 21600108 -137999675 + B3 SINE B2 4 216 0 1 749 407 170 0 11 chr3 21600126 21600162 -137999621 + polypurine Low_complexity Low_complexity 2 37 0 1 749 2164 88 6 56 chr3 21600162 21600500 -137999283 - RLTRETN_Mm LTR ERVK 0 322 2 1 749 1307 62 0 6 chr3 21600500 21600679 -137999104 + (GGAA)n Simple_repeat Simple_repeat 3 180 0 1 749 407 170 0 11 chr3 21600679 21600730 -137999053 + polypurine Low_complexity Low_complexity 38 88 0 1 749 680 281 61 9 chr3 21600749 21600961 -137998822 + ID_B1 SINE B4 2 224 0 1 749 1315 205 139 50 chr3 21601202 21601582 -137998201 + MTD LTR MaLR 6 419 0 1 749 1212 255 3 10 chr3 21601994 21602283 -137997500 - MTE2b LTR MaLR 0 379 93 1 749 802 301 18 5 chr3 21602978 21603202 -137996581 + B4 SINE B4 1 227 -65 1 749 210 37 0 0 chr3 21603470 21603497 -137996286 + (CA)n Simple_repeat Simple_repeat 1 27 0 1 749 240 333 0 14 chr3 21603519 21603589 -137996194 + B4 SINE B4 220 288 -4 1 749 180 97 0 0 chr3 21603645 21603676 -137996107 + (TTTTTA)n Simple_repeat Simple_repeat 4 34 0 1 749 2495 126 7 26 chr3 21604139 21604556 -137995227 - RLTR9E LTR ERVK 0 409 1 1 749 479 101 0 71 chr3 21604556 21604641 -137995142 - ETnERV2-int LTR ERVK -1 7405 7327 1 749 5639 107 4 16 chr3 21604852 21605787 -137993996 - ETnERV2-int LTR ERVK -1179 6227 5543 1 749 1758 241 8 13 chr3 21605968 21606347 -137993436 + RMER1C Other Other 625 1001 -341 1 749 4331 51 2 0 chr3 21606357 21606868 -137992915 + LTRIS3 LTR ERV1 1 512 0 1 749 302 207 25 75 chr3 21606868 21606988 -137992795 + RLTR1B-int LTR ERV1 1 114 -3584 1 749 721 111 60 17 chr3 21607017 21607188 -137992595 + RLTR1B-int LTR ERV1 63 293 -3006 1 749 1026 124 66 17 chr3 21607536 21607717 -137992066 + RMER16-int LTR ERVK 142 331 -5075 1 749 3040 118 146 0 chr3 21607698 21608269 -137991514 + RMER16-int LTR ERVK 685 1339 -4067 1 749 4866 125 100 24 chr3 21608301 21610374 -137989409 + RLTR1B-int LTR ERV1 783 2555 -744 1 749 1294 285 85 14 chr3 21610361 21610774 -137989009 + RLTR1B-int LTR ERV1 3705 4146 -917 1 749 990 204 50 0 chr3 21610867 21611087 -137988696 + RLTR1B-int LTR ERV1 4791 5021 -42 1 749 4372 47 2 0 chr3 21611088 21611599 -137988184 + LTRIS3 LTR ERV1 1 512 0 1 749 1723 155 66 3 chr3 21611599 21611917 -137987866 + RMER1C Other Other 1005 1342 0 1 749 901 182 203 0 chr3 21611970 21612157 -137987626 + URR1A DNA MER1_type 2 226 0 1 749 23 0 0 0 chr3 21612448 21612471 -137987312 + AT_rich Low_complexity Low_complexity 1 23 0 1 749 232 244 130 109 chr3 21614980 21615072 -137984711 + PB1D7 SINE Alu 18 111 -9 1 749 497 317 0 0 chr3 21615026 21615146 -137984637 + B4A SINE B4 173 292 0 1 749 197 108 27 0 chr3 21615266 21615303 -137984480 + (TTTA)n Simple_repeat Simple_repeat 3 40 0 1 749 648 73 188 0 chr3 21615834 21615930 -137983853 - Lx2 LINE L1 -1173 5824 5711 1 749 798 167 70 7 chr3 21615935 21616116 -137983667 + Lx LINE L1 6432 6638 -16 1 749 486 0 0 0 chr3 21616116 21616170 -137983613 + (GA)n Simple_repeat Simple_repeat 1 54 0 1 749 919 309 23 53 chr3 21616816 21617209 -137982574 + RodERV21-int LTR ERV1 684 1064 -3927 1 749 5785 278 24 41 chr3 21617267 21618099 -137981684 + RodERV21-int LTR ERV1 1098 1917 -3074 1 749 2397 166 26 127 chr3 21618099 21618595 -137981188 + RLTR41 LTR ERV1 1 446 0 1 749 5785 278 24 41 chr3 21618595 21619462 -137980321 + RodERV21-int LTR ERV1 1918 2767 -2224 1 749 327 65 0 0 chr3 21619637 21619683 -137980100 + (A)n Simple_repeat Simple_repeat 1 46 0 1 749 207 100 0 0 chr3 21620574 21620604 -137979179 + (A)n Simple_repeat Simple_repeat 1 30 0 1 749 507 271 162 60 chr3 21620714 21621048 -137978735 + RLTR9A LTR ERVK 1 368 0 1 749 1765 333 59 10 chr3 21621817 21622633 -137977150 + RodERV21-int LTR ERV1 3941 4796 -195 1 749 245 169 0 17 chr3 21623496 21623556 -137976227 + GA-rich Low_complexity Low_complexity 6 64 0 1 749 25 0 0 0 chr3 21624222 21624247 -137975536 + AT_rich Low_complexity Low_complexity 1 25 0 1 749 585 282 113 85 chr3 21624251 21624534 -137975249 + B4A SINE B4 2 292 0 1 749 661 302 99 29 chr3 21625109 21625382 -137974401 + B4A SINE B4 1 292 0 1 749 217 163 20 20 chr3 21626255 21626305 -137973478 + MIRc SINE MIR 154 203 -65 1 749 180 0 0 0 chr3 21626383 21626403 -137973380 + (A)n Simple_repeat Simple_repeat 1 20 0 1 750 180 238 0 0 chr3 21628232 21628295 -137971488 + (CA)n Simple_repeat Simple_repeat 2 64 0 1 750 2272 181 30 18 chr3 21629138 21629538 -137970245 + MTB_Mm LTR MaLR 3 407 0 1 750 2062 180 21 24 chr3 21629629 21630004 -137969779 + ORR1D1 LTR MaLR 1 374 0 1 750 257 0 60 40 chr3 21630229 21630279 -137969504 + (TTTTTG)n Simple_repeat Simple_repeat 2 52 0 1 750 317 278 20 40 chr3 21631243 21631344 -137968439 + RSINE1 SINE B4 67 165 0 1 750 1196 82 0 0 chr3 21632720 21632867 -137966916 + B1_Mus1 SINE Alu 2 148 0 1 750 231 114 0 0 chr3 21633203 21633238 -137966545 + (TG)n Simple_repeat Simple_repeat 2 36 0 1 750 668 355 5 10 chr3 21633324 21633523 -137966260 - B4A SINE B4 -87 205 8 1 750 338 339 33 25 chr3 21634095 21634216 -137965567 - ID_B1 SINE B4 -1 223 102 1 750 1956 117 59 269 chr3 21634547 21635157 -137964626 - RLTR45 LTR ERVK 0 482 1 1 750 1076 277 147 14 chr3 21636290 21636725 -137963058 + RMER5 LTR ERV1 42 534 0 1 750 2029 136 35 9 chr3 21637076 21637395 -137962388 - ORR1A2 LTR MaLR 0 327 1 2 750 375 23 0 0 chr3 21637766 21637810 -137961973 + (TTTTG)n Simple_repeat Simple_repeat 3 46 0 2 750 408 260 0 13 chr3 21637859 21637937 -137961846 - ID4 SINE ID -2 81 5 2 750 901 208 10 30 chr3 21638121 21638319 -137961464 - ORR1C2 LTR MaLR -159 225 32 2 750 1309 277 123 37 chr3 21638392 21639289 -137960494 - L1MA5 LINE L1 -1596 6100 5187 2 750 212 136 45 0 chr3 21640639 21640683 -137959100 + (TA)n Simple_repeat Simple_repeat 1 46 0 2 750 393 22 0 0 chr3 21641934 21641980 -137957803 + (TG)n Simple_repeat Simple_repeat 2 47 0 2 750 303 71 0 0 chr3 21642184 21642226 -137957557 + (TTTA)n Simple_repeat Simple_repeat 2 43 0 2 750 234 170 0 60 chr3 21642250 21642300 -137957483 - B2_Mm2 SINE B2 -99 96 50 2 750 1116 175 11 0 chr3 21642350 21642527 -137957256 - B2_Mm1t SINE B2 -14 179 1 2 750 1156 96 11 0 chr3 21642572 21642749 -137957034 + (CCA)n Simple_repeat Simple_repeat 1 179 0 2 750 2419 191 30 101 chr3 21642758 21643363 -137956420 + RMER15 LTR ERVL 9 570 -5 2 750 382 358 32 45 chr3 21644057 21644212 -137955571 - B4 SINE B4 -3 289 137 2 750 649 341 0 35 chr3 21644301 21644474 -137955309 - B4 SINE B4 -120 172 6 2 750 846 297 28 42 chr3 21645291 21645589 -137954194 - MTEb LTR MaLR -4 375 26 2 750 2277 123 3 9 chr3 21645788 21646117 -137953666 + ORR1A2 LTR MaLR 1 327 0 2 750 4765 147 117 74 chr3 21646225 21647206 -137952577 + RLTR13D2 LTR ERVK 1 1023 0 2 750 237 65 0 0 chr3 21647481 21647512 -137952271 + (TG)n Simple_repeat Simple_repeat 1 31 0 2 750 766 277 6 11 chr3 21648247 21648426 -137951357 + B3A SINE B2 3 180 -18 2 750 529 154 17 17 chr3 21650451 21650570 -137949213 + (CATATA)n Simple_repeat Simple_repeat 2 120 0 2 750 5490 111 9 27 chr3 21650666 21650978 -137948805 - Lx LINE L1 -6 6648 6346 2 750 2659 120 26 130 chr3 21650978 21651515 -137948268 + RLTR45 LTR ERVK 1 481 -1 2 750 5490 111 9 27 chr3 21651515 21651990 -137947793 - Lx LINE L1 -309 6345 5875 2 750 11054 156 12 6 chr3 21653417 21654043 -137945740 - Lx LINE L1 0 5883 5260 2 750 1297 109 16 11 chr3 21654043 21654228 -137945555 - B2_Mm2 SINE B2 -8 187 2 2 750 11054 156 12 6 chr3 21654228 21655441 -137944342 - Lx LINE L1 -624 5259 4032 2 750 7467 114 3 10 chr3 21655441 21657194 -137942589 - L1VL4 LINE L1 -1664 1895 156 2 750 500 320 36 87 chr3 21657896 21658091 -137941692 - B3 SINE B2 -10 185 1 2 750 334 272 66 28 chr3 21658091 21658197 -137941586 + MTE2a LTR MaLR 83 192 -187 2 750 7652 68 0 1 chr3 21658197 21659156 -137940627 + L1_Mus1 LINE L1 5610 6567 0 2 750 629 245 164 39 chr3 21659162 21659375 -137940408 + MTE2a LTR MaLR 177 418 -1 2 750 225 310 164 39 chr3 21659550 21659654 -137940129 - L2c LINE L2 -235 3152 3036 2 750 782 263 20 45 chr3 21661912 21662111 -137937672 + B3A SINE B2 5 198 0 2 750 774 0 0 0 chr3 21662240 21662326 -137937457 + (GAAA)n Simple_repeat Simple_repeat 3 88 0 2 750 854 301 103 43 chr3 21662327 21662810 -137936973 - RMER5 LTR ERV1 -20 514 3 2 750 1079 115 16 0 chr3 21662810 21663055 -137936728 + (TTTC)n Simple_repeat Simple_repeat 1 249 0 2 750 234 0 0 0 chr3 21664328 21664354 -137935429 + (A)n Simple_repeat Simple_repeat 1 26 0 2 750 2440 171 118 4 chr3 21664395 21664870 -137934913 - RMER4B LTR ERVK 0 585 57 2 750 1303 38 0 0 chr3 21664870 21665029 -137934754 + B2_Mm1a SINE B2 2 160 -33 2 750 414 0 0 0 chr3 21665029 21665075 -137934708 + (TAAA)n Simple_repeat Simple_repeat 3 48 0 2 750 325 169 0 0 chr3 21665075 21665140 -137934643 - RMER4B LTR ERVK -516 69 5 2 750 841 217 7 0 chr3 21665697 21665840 -137933943 - B1_Mur1 SINE Alu -1 148 5 2 750 769 305 30 88 chr3 21666744 21666994 -137932789 + B4A SINE B4 1 234 -58 2 750 2102 194 2 58 chr3 21666994 21667394 -137932389 + ORR1C1 LTR MaLR 1 378 0 2 750 782 305 30 88 chr3 21667394 21667438 -137932345 + B4A SINE B4 235 278 -14 2 750 225 0 0 0 chr3 21667448 21667473 -137932310 + (CA)n Simple_repeat Simple_repeat 1 25 0 2 750 464 276 44 15 chr3 21668064 21668200 -137931583 + Lx9 LINE L1 7140 7279 -365 2 750 377 255 94 0 chr3 21668331 21668437 -137931346 - PB1D10 SINE Alu 0 117 2 2 750 2412 242 77 5 chr3 21669482 21670117 -137929666 + RCHARR1 DNA MER1_type 65 745 -229 2 750 180 111 0 0 chr3 21670522 21670549 -137929234 + (GGAA)n Simple_repeat Simple_repeat 1 27 0 2 750 306 182 29 57 chr3 21671572 21671642 -137928141 + ID_B1 SINE B4 142 209 -15 2 750 516 282 15 0 chr3 21672218 21672349 -137927434 - ID_B1 SINE B4 -8 216 84 2 750 276 269 0 56 chr3 21672590 21672661 -137927122 - B1F SINE Alu -61 88 22 2 750 755 57 9 0 chr3 21672974 21673079 -137926704 + (GAAA)n Simple_repeat Simple_repeat 3 108 0 2 750 297 198 216 10 chr3 21673915 21674012 -137925771 - PB1D10 SINE Alu 0 117 1 2 750 411 282 206 0 chr3 21674031 21674162 -137925621 - B3A SINE B2 -2 196 39 2 750 5981 80 24 15 chr3 21674580 21676132 -137923651 + L1VL2 LINE L1 271 1836 -1779 2 750 291 315 0 0 chr3 21676270 21676359 -137923424 - PB1D10 SINE Alu -2 115 27 2 750 1053 79 0 0 chr3 21676770 21676909 -137922874 - B1_Mus1 SINE Alu 0 148 10 2 750 22 80 0 0 chr3 21677224 21677274 -137922509 + AT_rich Low_complexity Low_complexity 1 50 0 2 750 24 53 0 0 chr3 21677428 21677466 -137922317 + AT_rich Low_complexity Low_complexity 1 38 0 2 750 4124 207 59 33 chr3 21678255 21679286 -137920497 + Lx9 LINE L1 6579 7636 -8 2 750 243 224 36 227 chr3 21679458 21679568 -137920215 - B1_Mus1 SINE Alu -33 115 27 2 750 634 246 65 0 chr3 21679476 21679614 -137920169 - ID_B1 SINE B4 -23 201 55 2 750 268 295 162 4 chr3 21680206 21680434 -137919349 + L1ME4a LINE L1 5643 5906 -218 2 750 198 0 0 0 chr3 21680439 21680461 -137919322 + (A)n Simple_repeat Simple_repeat 1 22 0 2 750 1626 193 111 33 chr3 21680618 21681041 -137918742 - Lx5 LINE L1 -3 7047 6592 2 750 1973 216 38 47 chr3 21681043 21681549 -137918234 - Lx5 LINE L1 -563 6487 5987 2 750 2893 48 3 3 chr3 21681549 21681923 -137917860 + L1Md_F2 LINE L1 5213 5586 -297 2 750 8051 44 0 22 chr3 21681924 21682940 -137916843 + L1Md_F2 LINE L1 5588 6581 -1 2 750 20676 157 51 53 chr3 21682955 21685501 -137914282 - Lx5 LINE L1 -1058 5992 3562 2 750 3793 125 98 8 chr3 21685501 21686123 -137913660 + RLTR33 LTR ERVK 1 678 0 2 750 20676 164 52 54 chr3 21686123 21688710 -137911073 - Lx5 LINE L1 -2316 3561 878 2 750 22 35 0 0 chr3 21689093 21689122 -137910661 + AT_rich Low_complexity Low_complexity 1 29 0 2 750 1159 296 7 4 chr3 21689126 21689407 -137910376 - ORR1D2 LTR MaLR 0 370 89 2 750 1642 233 52 50 chr3 21689931 21690455 -137909328 - RLTR20B3 LTR ERVK -33 544 20 2 750 658 233 9 0 chr3 21690666 21690782 -137909001 + RSINE1 SINE B4 3 119 -46 2 750 185 31 94 0 chr3 21690851 21690883 -137908900 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 2 750 388 197 127 20 chr3 21691542 21691692 -137908091 + Lx9 LINE L1 7478 7643 -1 2 750 248 233 41 0 chr3 21692147 21692220 -137907563 + Lx8 LINE L1 7391 7466 -7 2 750 306 246 119 3 chr3 21692882 21692997 -137906786 - B4A SINE B4 -161 131 7 2 750 373 279 16 148 chr3 21693093 21693121 -137906662 - RSINE1 SINE B4 0 165 144 2 750 186 43 0 0 chr3 21693121 21693144 -137906639 + (CAGAGA)n Simple_repeat Simple_repeat 2 24 0 2 750 373 279 16 148 chr3 21693144 21693304 -137906479 - RSINE1 SINE B4 -22 143 2 2 750 422 281 102 0 chr3 21694055 21694104 -137905679 + ID_B1 SINE B4 32 93 -131 2 750 332 269 112 28 chr3 21694104 21694211 -137905572 + PB1D10 SINE Alu 1 116 -1 2 750 444 285 124 36 chr3 21694250 21694581 -137905202 + BLACKJACK DNA AcHobo 1556 1915 -1029 2 750 323 333 38 56 chr3 21694812 21694999 -137904784 + BLACKJACK DNA AcHobo 1937 2119 -825 2 750 2146 239 77 24 chr3 21694999 21695440 -137904343 + RLTR20B1 LTR ERVK 1 455 -108 2 750 405 0 0 0 chr3 21695440 21695485 -137904298 + (TC)n Simple_repeat Simple_repeat 2 46 0 2 750 510 17 0 0 chr3 21695485 21695543 -137904240 + (TG)n Simple_repeat Simple_repeat 2 60 0 2 750 2146 239 77 24 chr3 21695543 21695635 -137904148 + RLTR20B1 LTR ERVK 456 562 -1 2 750 461 301 192 26 chr3 21695658 21696327 -137903456 + BLACKJACK DNA AcHobo 2156 2934 -10 2 750 297 0 0 0 chr3 21696328 21696361 -137903422 + (TG)n Simple_repeat Simple_repeat 2 34 0 2 750 341 177 12 135 chr3 21696376 21696546 -137903237 + Lx9 LINE L1 7465 7613 -31 2 750 354 264 360 18 chr3 21696786 21696995 -137902788 - B4A SINE B4 -9 283 2 2 750 677 286 73 50 chr3 21697680 21697989 -137901794 - MTE2a LTR MaLR -128 291 1 2 750 261 0 0 0 chr3 21698083 21698112 -137901671 + (TG)n Simple_repeat Simple_repeat 1 29 0 2 750 437 262 333 0 chr3 21698113 21698260 -137901523 - B3 SINE B2 -20 196 1 2 750 431 305 113 12 chr3 21698540 21698885 -137900898 - L1MEf LINE L1 -4208 2532 2153 2 750 1120 131 12 0 chr3 21698893 21699053 -137900730 - RLTR14 LTR ERV1 0 382 221 2 750 687 254 5 92 chr3 21699053 21699270 -137900513 - RLTR31_Mm LTR ERVK 0 561 364 2 750 2033 177 71 36 chr3 21699266 21699789 -137899994 - RLTR31_Mm LTR ERVK -20 541 1 2 750 1236 190 4 13 chr3 21699789 21700015 -137899768 - RLTR14 LTR ERV1 -156 226 3 2 750 312 370 113 31 chr3 21700171 21700353 -137899430 - L1MEf LINE L1 -4789 1951 1765 2 750 630 246 96 30 chr3 21700353 21700550 -137899233 - B3 SINE B2 -6 210 1 2 750 337 344 85 9 chr3 21700550 21700811 -137898972 - L1MEf LINE L1 -4976 1764 1397 2 750 906 211 48 124 chr3 21700815 21701166 -137898617 - RLTRETN_Mm LTR ERVK 0 409 1 2 750 7530 113 8 27 chr3 21701175 21702624 -137897159 - L1Md_F LINE L1 -3423 2460 1073 2 750 2347 179 26 0 chr3 21702623 21703092 -137896691 - L1Md_F LINE L1 -5411 1205 725 2 750 364 286 15 8 chr3 21703094 21703228 -137896555 - L1Md_F LINE L1 -5807 809 675 2 750 387 259 22 19 chr3 21703290 21703476 -137896307 - L1VL1 LINE L1 -6040 382 87 2 750 1073 276 82 75 chr3 21703616 21704122 -137895661 + RMER19C LTR ERVK 36 490 -121 2 750 727 343 31 81 chr3 21704912 21705296 -137894487 + LTR40a LTR ERVL 2 366 -153 2 750 576 0 0 0 chr3 21706112 21706176 -137893607 + (TC)n Simple_repeat Simple_repeat 1 64 0 2 750 225 65 0 0 chr3 21706490 21706521 -137893262 + (CTAA)n Simple_repeat Simple_repeat 1 31 0 2 750 446 288 32 8 chr3 21706522 21706648 -137893135 - B1F2 SINE Alu -14 135 7 2 750 296 349 29 65 chr3 21706658 21706796 -137892987 - MLT1G LTR MaLR -401 168 36 2 750 595 294 0 0 chr3 21706828 21706947 -137892836 + B1F2 SINE Alu 2 120 -29 2 750 1172 172 15 5 chr3 21707113 21707317 -137892466 + URR1A DNA MER1_type 1 206 -20 3 750 253 293 33 99 chr3 21708405 21708496 -137891287 - B4A SINE B4 -149 143 59 3 750 348 281 61 30 chr3 21709543 21709675 -137890108 + RMER15 LTR ERVL 337 472 -103 3 750 667 270 119 50 chr3 21710220 21710497 -137889286 + RMER15 LTR ERVL 267 562 -13 3 750 280 348 0 22 chr3 21710757 21710892 -137888891 - L1MA10 LINE L1 -52 6282 6151 3 750 768 264 75 13 chr3 21710937 21711255 -137888528 + RLTR11A2 LTR ERVK 7 344 -183 3 750 259 247 13 0 chr3 21711668 21711745 -137888038 - L1MA10 LINE L1 -315 5976 5899 3 750 325 346 10 0 chr3 21711798 21711899 -137887884 + MLT1F2 LTR MaLR 2 103 -457 3 750 266 264 149 32 chr3 21712170 21712264 -137887519 + MLT1F2 LTR MaLR 416 520 -40 3 750 238 333 52 10 chr3 21712301 21712398 -137887385 + LTR81A LTR ERV1? 1230 1330 -20 3 750 548 284 6 31 chr3 21713147 21713307 -137886476 + RSINE1 SINE B4 5 160 -5 3 750 24 85 0 0 chr3 21713571 21713630 -137886153 + AT_rich Low_complexity Low_complexity 1 59 0 3 750 202 56 56 0 chr3 21714244 21714280 -137885503 + (TA)n Simple_repeat Simple_repeat 2 39 0 3 750 2071 104 24 59 chr3 21715166 21715504 -137884279 + ORR1A3 LTR MaLR 1 326 0 3 750 21 0 0 0 chr3 21715537 21715558 -137884225 + AT_rich Low_complexity Low_complexity 1 21 0 3 750 267 314 92 81 chr3 21718066 21718239 -137881544 + LFSINE_Vert SINE SINE 8 182 -277 3 750 282 281 0 0 chr3 21718391 21718448 -137881335 + tRNA-Ala-GCY_ tRNA tRNA 12 68 -7 3 750 888 251 17 0 chr3 21718397 21718576 -137881207 + ID_B1 SINE B4 25 206 -18 3 750 213 235 0 0 chr3 21718883 21718934 -137880849 + (TA)n Simple_repeat Simple_repeat 1 51 0 3 750 216 0 0 0 chr3 21719470 21719494 -137880289 + (TTTC)n Simple_repeat Simple_repeat 1 24 0 3 750 618 310 30 151 chr3 21719772 21720103 -137879680 - B4 SINE B4 0 292 2 3 750 211 28 27 27 chr3 21720105 21720142 -137879641 + (TTTTTG)n Simple_repeat Simple_repeat 3 39 0 3 750 211 28 27 27 chr3 21720193 21720230 -137879553 + (TTTTTG)n Simple_repeat Simple_repeat 3 39 0 3 750 30 0 0 0 chr3 21721083 21721113 -137878670 + AT_rich Low_complexity Low_complexity 1 30 0 3 750 279 227 0 120 chr3 21721186 21721261 -137878522 + MER2B DNA MER2_type 258 323 -13 3 750 236 284 12 58 chr3 21721788 21721874 -137877909 + ID4 SINE ID 1 82 -1 3 750 590 216 48 73 chr3 21722502 21722667 -137877116 + RSINE1 SINE B4 5 165 0 3 750 842 214 99 19 chr3 21722843 21723105 -137876678 - B4A SINE B4 -8 284 2 3 750 525 141 0 0 chr3 21724919 21725018 -137874765 + (TC)n Simple_repeat Simple_repeat 1 99 0 3 750 405 0 0 0 chr3 21725018 21725063 -137874720 + (TG)n Simple_repeat Simple_repeat 2 46 0 3 750 267 193 22 11 chr3 21725794 21725883 -137873900 + CT-rich Low_complexity Low_complexity 3 92 0 3 750 454 232 21 0 chr3 21725994 21726089 -137873694 - ID_B1 SINE B4 -20 204 108 3 750 320 292 62 0 chr3 21726000 21726113 -137873670 - B1F2 SINE Alu -29 120 1 3 750 682 327 0 20 chr3 21726120 21726323 -137873460 - B3 SINE B2 0 216 18 3 750 486 296 61 0 chr3 21727481 21727596 -137872187 + RMER1B Other Other 593 714 -352 3 750 1113 208 0 43 chr3 21727759 21727990 -137871793 + RMER1C Other Other 14 234 -1108 3 750 387 0 0 0 chr3 21727990 21728033 -137871750 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 750 317 324 19 0 chr3 21728215 21728320 -137871463 + RMER1C Other Other 34 140 -1202 3 750 372 22 0 0 chr3 21728332 21728377 -137871406 + (TTG)n Simple_repeat Simple_repeat 2 46 0 3 750 3733 265 41 52 chr3 21728405 21729638 -137870145 + RMER1C Other Other 189 1334 -8 3 750 966 278 51 21 chr3 21729640 21729974 -137869809 + ORR1E LTR MaLR 16 359 0 3 750 2041 181 88 5 chr3 21730119 21730507 -137869276 - MTC LTR MaLR 0 421 2 3 750 923 62 30 15 chr3 21731830 21731961 -137867822 + B1_Mm SINE Alu 5 137 -10 3 750 212 0 36 0 chr3 21731961 21731989 -137867794 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 3 750 456 278 31 16 chr3 21732088 21732216 -137867567 + B4 SINE B4 64 193 -99 3 750 183 80 0 0 chr3 21732244 21732269 -137867514 + (CG)n Simple_repeat Simple_repeat 1 25 0 3 750 234 0 0 0 chr3 21732269 21732294 -137867489 + (CA)n Simple_repeat Simple_repeat 1 26 0 3 750 595 239 52 0 chr3 21732354 21732488 -137867295 + B1_Mus2 SINE Alu 1 141 -6 3 750 925 116 6 6 chr3 21732525 21732681 -137867102 + (GGGA)n Simple_repeat Simple_repeat 3 158 0 3 750 40 0 0 0 chr3 21732922 21732962 -137866821 + AT_rich Low_complexity Low_complexity 1 40 0 3 750 718 296 18 18 chr3 21733318 21733538 -137866245 - ID_B1 SINE B4 -1 223 4 3 750 1661 221 31 35 chr3 21735340 21735791 -137863992 + RLTR16 LTR ERVK 31 479 -26 3 750 315 267 169 68 chr3 21735848 21736025 -137863758 + B4 SINE B4 24 218 -74 3 750 278 328 16 16 chr3 21736052 21736173 -137863610 + RSINE1 SINE B4 39 159 -6 3 750 1456 222 34 17 chr3 21736887 21737244 -137862539 - ORR1B2 LTR MaLR 0 367 5 3 750 586 292 157 20 chr3 21738422 21738670 -137861113 + MTE2b LTR MaLR 8 289 -90 3 750 182 37 0 36 chr3 21738693 21738721 -137861062 + (CCCCCA)n Simple_repeat Simple_repeat 1 27 0 3 750 267 31 0 0 chr3 21740250 21740282 -137859501 + (T)n Simple_repeat Simple_repeat 1 32 0 3 750 234 0 0 0 chr3 21740327 21740353 -137859430 + (TG)n Simple_repeat Simple_repeat 2 27 0 3 750 408 229 50 13 chr3 21740768 21740927 -137858856 + (CA)n Simple_repeat Simple_repeat 2 166 0 3 750 215 220 35 35 chr3 21741008 21741153 -137858630 + (CA)n Simple_repeat Simple_repeat 1 145 0 3 750 470 324 27 66 chr3 21742992 21743293 -137856490 - B4A SINE B4 0 292 4 3 750 841 169 100 11 chr3 21743332 21743512 -137856271 + ORR1B2 LTR MaLR 8 203 -164 3 750 1603 192 60 23 chr3 21743537 21743889 -137855894 + ORR1B2 LTR MaLR 1 365 -2 3 750 264 329 7 27 chr3 21743957 21744104 -137855679 + MIR SINE MIR 110 253 -9 3 750 787 283 84 86 chr3 21744776 21745186 -137854597 + MTE2a LTR MaLR 9 406 -13 3 750 1710 158 56 53 chr3 21745990 21746350 -137853433 + ORR1B2 LTR MaLR 3 363 -4 3 750 182 281 94 0 chr3 21746645 21746741 -137853042 - MIR SINE MIR -72 190 86 3 750 902 213 7 4 chr3 21746892 21747140 -137852643 + GA-rich Low_complexity Low_complexity 1 248 0 3 750 3599 50 2 0 chr3 21747189 21747628 -137852155 + L1Md_F2 LINE L1 5147 5586 -297 3 750 7971 36 22 33 chr3 21747629 21748571 -137851212 + L1Md_F2 LINE L1 5588 6551 -31 3 750 1746 16 0 0 chr3 21748571 21748764 -137851019 + B2_Mm1a SINE B2 1 193 0 3 750 7971 36 22 33 chr3 21748764 21748827 -137850956 + L1Md_F2 LINE L1 6552 6582 0 3 750 333 0 0 0 chr3 21749172 21749209 -137850574 + (GA)n Simple_repeat Simple_repeat 1 37 0 3 750 1289 298 85 37 chr3 21749920 21750485 -137849298 + Lx8 LINE L1 6880 7471 -2 3 750 1240 286 36 22 chr3 21750698 21751063 -137848720 - MTEa LTR MaLR -5 374 5 3 750 450 301 51 14 chr3 21751645 21751783 -137848000 - MTE2b LTR MaLR -220 159 17 3 750 838 233 34 14 chr3 21751849 21751909 -137847874 - ID_B1 SINE B4 0 224 160 3 750 6281 37 61 5 chr3 21751909 21752674 -137847109 - RLTR13C2 LTR ERVK 0 808 1 3 750 838 233 34 14 chr3 21752674 21752822 -137846961 - ID_B1 SINE B4 -65 159 12 3 750 440 313 8 8 chr3 21754161 21754293 -137845490 + ID_B1 SINE B4 39 170 -54 3 750 552 316 32 81 chr3 21754359 21754704 -137845079 - ORR1E LTR MaLR 0 359 32 3 750 22 0 0 0 chr3 21754915 21754937 -137844846 + AT_rich Low_complexity Low_complexity 1 22 0 3 750 396 0 0 0 chr3 21754995 21755039 -137844744 + (TG)n Simple_repeat Simple_repeat 1 44 0 3 750 282 116 0 0 chr3 21755041 21755084 -137844699 + (GA)n Simple_repeat Simple_repeat 2 44 0 3 750 542 316 77 35 chr3 21755133 21755392 -137844391 - B4A SINE B4 -18 274 5 3 750 1478 190 30 21 chr3 21755527 21755866 -137843917 + RLTR15 LTR ERVK 1 342 -17 3 750 448 208 10 20 chr3 21755994 21756092 -137843691 + MTEb LTR MaLR 19 115 -264 3 750 191 312 0 0 chr3 21756135 21756183 -137843600 - MIRb SINE MIR -194 74 27 3 750 746 233 129 0 chr3 21756275 21756485 -137843298 + MTEb LTR MaLR 126 362 -17 3 750 481 95 0 0 chr3 21756642 21756716 -137843067 - MTB_Mm LTR MaLR -10 397 324 3 750 212 303 0 15 chr3 21756841 21756908 -137842875 + ID4 SINE ID 2 67 -16 3 750 23 68 0 0 chr3 21757015 21757059 -137842724 + AT_rich Low_complexity Low_complexity 1 44 0 3 750 515 324 21 0 chr3 21757067 21757212 -137842571 - RSINE1 SINE B4 -15 150 3 3 93 937 233 139 22 chr3 21757710 21758058 -137841725 - MTD LTR MaLR -13 408 7 3 751 263 260 12 49 chr3 21758099 21758180 -137841603 + ID4_ SINE ID 2 79 -4 3 751 240 299 214 61 chr3 21759375 21759571 -137840212 - B4A SINE B4 -64 228 3 3 751 305 335 23 58 chr3 21760298 21760472 -137839311 + MIR3 SINE MIR 38 205 -3 3 751 1009 282 18 40 chr3 21761216 21761604 -137838179 + Lx6 LINE L1 6462 7218 -242 3 751 243 236 101 28 chr3 21761611 21761720 -137838063 + Lx6 LINE L1 7344 7460 0 3 751 360 59 0 0 chr3 21761759 21761810 -137837973 + (CA)n Simple_repeat Simple_repeat 2 52 0 3 751 236 255 20 0 chr3 21761906 21761957 -137837826 + (CA)n Simple_repeat Simple_repeat 1 52 0 3 751 1606 210 82 17 chr3 21762006 21762508 -137837275 - RMER4B LTR ERVK -12 573 1 3 751 380 325 0 0 chr3 21762743 21762860 -137836923 + PB1D10 SINE Alu 1 117 0 3 751 948 262 65 72 chr3 21763373 21763628 -137836155 - MTE2b LTR MaLR -3 371 116 3 751 345 107 0 0 chr3 21763628 21763684 -137836099 + Lx LINE L1 6587 6642 -12 3 751 948 281 50 109 chr3 21763684 21763796 -137835987 - MTE2b LTR MaLR -264 115 27 3 751 2583 272 129 21 chr3 21763806 21764581 -137835202 - MTE2b-int LTR MaLR -2 1578 710 3 751 2194 112 15 12 chr3 21764581 21764907 -137834876 - ORR1A2 LTR MaLR 0 327 1 3 751 2583 272 129 21 chr3 21764907 21765020 -137834763 - MTE2b-int LTR MaLR -871 709 594 3 751 225 195 25 25 chr3 21765268 21765347 -137834436 + T-rich Low_complexity Low_complexity 3 81 0 3 751 194 241 102 87 chr3 21765371 21765498 -137834285 - MIRm SINE MIR -127 149 21 3 751 280 286 33 11 chr3 21766784 21766876 -137832907 + B4A SINE B4 4 97 -195 4 751 1135 258 102 17 chr3 21767739 21768101 -137831682 - Lx8 LINE L1 -325 7148 6756 4 751 2591 142 34 10 chr3 21768323 21768734 -137831049 - MTC LTR MaLR 0 421 1 4 751 879 305 7 18 chr3 21769460 21769734 -137830049 - B4 SINE B4 -18 274 4 4 751 773 258 42 14 chr3 21769740 21769952 -137829831 - ID_B1 SINE B4 0 224 7 4 751 762 259 117 38 chr3 21770042 21770359 -137829424 + ORR1D2 LTR MaLR 9 350 -9 4 751 21 82 0 0 chr3 21770555 21770604 -137829179 + AT_rich Low_complexity Low_complexity 1 49 0 4 751 702 270 202 4 chr3 21771288 21771526 -137828257 - B4A SINE B4 -7 285 1 4 751 671 273 48 0 chr3 21771937 21772102 -137827681 + B3A SINE B2 5 177 -21 4 751 757 213 302 52 chr3 21772103 21772605 -137827178 + RMER20B LTR ERVK 1 627 0 4 751 519 351 30 24 chr3 21772874 21773043 -137826740 - ID_B1 SINE B4 -43 181 12 4 751 1303 243 12 122 chr3 21773277 21773703 -137826080 + MTE2b LTR MaLR 1 379 0 4 751 2252 228 51 15 chr3 21773832 21774300 -137825483 + Lx6 LINE L1 6799 7283 -177 4 751 387 0 0 0 chr3 21774307 21774350 -137825433 + (TGAA)n Simple_repeat Simple_repeat 3 45 0 4 751 340 306 24 24 chr3 21774404 21774528 -137825255 + Lx7 LINE L1 7205 7328 -368 4 751 231 88 0 0 chr3 21774566 21774600 -137825183 + (TTTG)n Simple_repeat Simple_repeat 3 36 0 4 751 275 286 78 23 chr3 21774668 21774797 -137824986 + Lx7 LINE L1 7559 7694 -2 4 751 452 331 22 0 chr3 21775599 21775738 -137824045 + ID_B1 SINE B4 53 194 -30 4 751 230 152 44 29 chr3 21775912 21775965 -137823818 + (TCTCTG)n Simple_repeat Simple_repeat 5 60 0 4 751 300 27 0 0 chr3 21775965 21776002 -137823781 + (TG)n Simple_repeat Simple_repeat 2 38 0 4 751 230 152 44 29 chr3 21776002 21776016 -137823767 + (TCTCTG)n Simple_repeat Simple_repeat 4 16 0 4 751 255 368 72 14 chr3 21776035 21776242 -137823541 + MLT1F1 LTR MaLR 259 477 -92 4 751 1336 230 57 24 chr3 21776239 21776573 -137823210 + ORR1D2 LTR MaLR 17 361 -9 4 751 293 292 0 0 chr3 21776770 21776835 -137822948 - RSINE1 SINE B4 -99 66 2 4 751 499 281 99 52 chr3 21776884 21777117 -137822666 - B4A SINE B4 -44 248 5 4 751 460 289 24 0 chr3 21777672 21777808 -137821975 + ID_B1 SINE B4 77 214 -10 4 751 766 251 12 12 chr3 21777825 21777986 -137821797 + RSINE1 SINE B4 5 165 0 4 751 273 57 0 0 chr3 21777991 21778026 -137821757 + (CATA)n Simple_repeat Simple_repeat 2 36 0 4 751 24 77 0 0 chr3 21778057 21778109 -137821674 + AT_rich Low_complexity Low_complexity 1 52 0 4 751 1269 61 0 0 chr3 21778821 21778969 -137820814 + B1_Mus1 SINE Alu 1 148 0 4 751 216 0 0 0 chr3 21778969 21778993 -137820790 + (A)n Simple_repeat Simple_repeat 1 24 0 4 751 466 239 36 9 chr3 21779004 21779114 -137820669 + ID_B1 SINE B4 3 115 -109 4 751 358 331 134 0 chr3 21779137 21779279 -137820504 - Tigger12c DNA MER2_type -553 181 21 4 751 710 306 28 28 chr3 21780053 21780342 -137819441 + B4 SINE B4 4 292 0 4 751 330 115 0 0 chr3 21780356 21780408 -137819375 + (CATA)n Simple_repeat Simple_repeat 3 54 0 4 751 373 253 115 0 chr3 21782025 21782112 -137817671 - RSINE1 SINE B4 -66 99 3 4 751 951 241 67 35 chr3 21782140 21782424 -137817359 + L1MC1 LINE L1 5318 5610 -723 4 751 984 300 3 79 chr3 21782459 21782651 -137817132 - B4 SINE B4 0 292 110 4 751 1365 53 35 0 chr3 21782651 21782820 -137816963 + L1_Mus1 LINE L1 6393 6567 0 4 751 984 300 3 79 chr3 21782820 21782931 -137816852 - B4 SINE B4 -183 109 12 4 751 304 331 137 8 chr3 21782963 21783094 -137816689 - B1F SINE Alu 0 149 2 4 751 1225 301 73 17 chr3 21783094 21783669 -137816114 + L1MC1 LINE L1 5605 6211 -122 4 751 279 314 221 20 chr3 21783951 21784204 -137815579 - L2c LINE L2 -2 3385 3082 4 751 1561 239 65 16 chr3 21784336 21784722 -137815061 - MTD LTR MaLR -14 405 1 4 751 848 288 24 5 chr3 21785904 21786110 -137813673 - ID_B1 SINE B4 0 224 15 4 751 654 192 0 40 chr3 21786381 21786506 -137813277 + PB1D9 SINE Alu 1 120 0 4 751 305 324 38 38 chr3 21786535 21786641 -137813142 + B1F1 SINE Alu 1 106 -43 4 751 834 219 194 28 chr3 21786642 21786895 -137812888 + ORR1D2 LTR MaLR 3 297 -73 4 751 810 266 134 73 chr3 21787220 21787548 -137812235 - ORR1E LTR MaLR -4 355 8 4 751 711 330 136 19 chr3 21788473 21788834 -137810949 + Lx8 LINE L1 6855 7257 -216 4 751 249 213 0 0 chr3 21788852 21788899 -137810884 + RMER15 LTR ERVL 425 471 -104 4 751 1808 87 12 12 chr3 21788923 21789168 -137810615 - L1_Mus1 LINE L1 0 6567 6323 4 751 405 309 69 35 chr3 21789813 21789957 -137809826 - RSINE1 SINE B4 -14 151 3 4 751 5357 55 17 9 chr3 21790140 21790795 -137808988 + L1_Mus1 LINE L1 5908 6567 0 4 751 957 290 24 24 chr3 21792560 21792850 -137806933 + B4 SINE B4 1 290 -2 4 751 216 0 0 0 chr3 21793136 21793160 -137806623 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 4 751 413 241 130 0 chr3 21793199 21793307 -137806476 - ID_B1 SINE B4 -2 222 101 4 751 791 201 42 37 chr3 21793537 21793754 -137806029 + Lx8 LINE L1 7256 7473 0 4 751 327 297 78 54 chr3 21793798 21794129 -137805654 - L1MD3 LINE L1 0 7995 7657 4 751 1608 58 21 0 chr3 21794151 21794339 -137805444 - B2_Mm1t SINE B2 0 193 2 4 751 184 283 16 16 chr3 21794754 21794815 -137804968 - MIRm SINE MIR -17 259 199 4 751 186 103 0 0 chr3 21795371 21795400 -137804383 + (TTA)n Simple_repeat Simple_repeat 2 30 0 4 751 852 246 107 75 chr3 21795571 21795852 -137803931 - B4A SINE B4 -1 291 2 4 751 309 210 16 0 chr3 21796271 21796333 -137803450 + MER82 DNA MER2_type 49 111 -542 4 751 531 333 0 7 chr3 21796593 21796741 -137803042 - RSINE1 SINE B4 -10 155 9 4 751 451 270 92 25 chr3 21796774 21796937 -137802846 - MTEa LTR MaLR 0 379 206 4 751 494 341 75 84 chr3 21797128 21797370 -137802413 + MER82 DNA MER2_type 323 571 -82 4 751 621 279 118 21 chr3 21797370 21797557 -137802226 + ID_B1 SINE B4 5 209 -15 4 751 494 341 75 84 chr3 21797557 21797647 -137802136 + MER82 DNA MER2_type 572 652 -1 4 751 558 256 101 0 chr3 21798091 21798220 -137801563 + RSINE1 SINE B4 5 146 -19 4 751 315 49 0 0 chr3 21798227 21798268 -137801515 + (CA)n Simple_repeat Simple_repeat 1 41 0 4 751 480 284 38 91 chr3 21798411 21798620 -137801163 + B3A SINE B2 1 198 0 4 751 867 152 52 94 chr3 21798711 21798792 -137800991 - Lx4B LINE L1 0 7058 6980 4 751 1491 157 12 201 chr3 21798792 21799295 -137800488 + RMER17C LTR ERVK 3 410 0 4 751 867 152 52 94 chr3 21799295 21799446 -137800337 - Lx4B LINE L1 -79 6979 6836 4 751 520 157 0 0 chr3 21799450 21799533 -137800250 - L1_Mur2 LINE L1 -426 5451 5369 4 751 717 70 10 0 chr3 21799528 21799628 -137800155 + L1_Mur2 LINE L1 5195 5295 -582 4 751 534 95 107 0 chr3 21799631 21799715 -137800068 + B1_Mm SINE Alu 1 93 -54 4 751 367 238 58 19 chr3 21799715 21799731 -137800052 + B4A SINE B4 86 189 -103 4 751 16632 122 31 29 chr3 21799732 21801480 -137798303 - L1_Mur2 LINE L1 -710 5167 3454 4 751 1242 75 0 0 chr3 21801480 21801627 -137798156 - B1_Mus2 SINE Alu 0 147 1 4 751 16632 122 31 29 chr3 21801627 21802622 -137797161 - L1_Mur2 LINE L1 -2424 3453 2418 4 751 891 285 16 112 chr3 21803063 21803375 -137796408 - B4 SINE B4 -8 284 3 4 751 1101 243 65 24 chr3 21803931 21804272 -137795511 - ORR1E LTR MaLR -4 355 1 4 751 626 187 0 36 chr3 21805207 21805346 -137794437 - Lx7 LINE L1 0 7696 7563 4 751 1116 249 57 15 chr3 21806036 21806301 -137793482 - B4 SINE B4 -8 284 9 4 751 710 321 24 0 chr3 21806999 21807211 -137792572 - ID_B1 SINE B4 -6 218 2 4 751 446 235 133 0 chr3 21807880 21807978 -137791805 - RSINE1 SINE B4 -33 132 22 4 751 673 240 51 62 chr3 21808496 21808691 -137791092 + B3A SINE B2 4 196 -2 4 751 947 275 9 5 chr3 21809084 21809307 -137790476 - ID_B1 SINE B4 0 224 1 4 751 480 292 29 51 chr3 21809695 21809832 -137789951 + ID_B1 SINE B4 91 224 0 4 751 283 303 143 42 chr3 21809967 21810184 -137789599 - MLT1G1 LTR MaLR -18 561 323 4 751 240 337 61 0 chr3 21810310 21810408 -137789375 - MLT1G1 LTR MaLR -473 118 15 4 751 219 289 54 32 chr3 21810419 21810434 -137789349 + B1F SINE Alu 54 144 -1 4 751 237 311 14 0 chr3 21810434 21810508 -137789275 + ID_B1 SINE B4 148 222 -2 4 751 332 286 0 50 chr3 21810621 21810761 -137789022 + L1M5 LINE L1 3406 3538 -2608 4 751 284 281 76 32 chr3 21810817 21810975 -137788808 + Lx6 LINE L1 47 211 -7517 4 751 742 149 35 7 chr3 21810969 21811111 -137788672 + Lx6 LINE L1 2157 2302 -3578 4 751 13236 161 55 14 chr3 21811106 21811941 -137787842 + Lx6 LINE L1 3341 4196 -1684 4 751 432 0 0 0 chr3 21811941 21811989 -137787794 + (ATATG)n Simple_repeat Simple_repeat 2 49 0 4 751 13236 192 76 14 chr3 21811989 21815031 -137784752 + Lx6 LINE L1 4197 7445 -15 4 751 222 191 0 0 chr3 21815070 21815117 -137784666 + GA-rich Low_complexity Low_complexity 2 48 0 4 751 325 292 79 0 chr3 21815235 21815324 -137784459 + PB1D7 SINE Alu 17 112 -8 4 751 25 0 0 0 chr3 21815324 21815349 -137784434 + AT_rich Low_complexity Low_complexity 1 25 0 4 751 439 275 18 0 chr3 21815917 21816026 -137783757 + B4 SINE B4 110 220 -72 4 751 537 58 0 0 chr3 21816027 21816096 -137783687 + (GA)n Simple_repeat Simple_repeat 2 70 0 4 751 1026 279 60 0 chr3 21816097 21816362 -137783421 + B4A SINE B4 7 287 -5 4 751 664 291 32 23 chr3 21817113 21817331 -137782452 - B4A SINE B4 -71 221 2 4 751 850 261 17 64 chr3 21818412 21818645 -137781138 + ID_B1 SINE B4 2 223 -1 4 751 1691 272 66 76 chr3 21818908 21819556 -137780227 + Lx8 LINE L1 6432 7073 -400 4 751 183 333 0 15 chr3 21819805 21819872 -137779911 - L2b LINE L2 -4 3371 3306 4 751 746 138 0 47 chr3 21820374 21820503 -137779280 - B1_Mus2 SINE Alu 0 147 25 4 751 814 264 9 92 chr3 21820623 21820840 -137778943 - ID_B1 SINE B4 -21 203 5 5 751 714 311 49 89 chr3 21820931 21821002 -137778781 + Tigger7 DNA MER2_type 7 79 -2412 5 751 1447 70 49 0 chr3 21821002 21821187 -137778596 + B2_Mm2 SINE B2 2 195 0 5 751 714 311 49 89 chr3 21821187 21821464 -137778319 + Tigger7 DNA MER2_type 80 341 -2150 5 751 1095 135 17 0 chr3 21821643 21821821 -137777962 + URR1A DNA MER1_type 46 226 0 5 751 382 322 28 14 chr3 21822127 21822272 -137777511 + B1F2 SINE Alu 1 147 -2 5 751 568 230 212 0 chr3 21822444 21822609 -137777174 + ID_B1 SINE B4 12 211 -13 5 751 527 324 21 0 chr3 21822634 21822776 -137777007 + RSINE1 SINE B4 5 149 -16 5 751 288 53 0 0 chr3 21822776 21822814 -137776969 + (CA)n Simple_repeat Simple_repeat 1 38 0 5 751 185 62 108 15 chr3 21822867 21822891 -137776892 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 5 751 1208 75 0 7 chr3 21822891 21823039 -137776744 - B1_Mus1 SINE Alu -1 147 1 5 751 185 62 108 15 chr3 21823039 21823079 -137776704 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 5 751 700 112 0 0 chr3 21823322 21823429 -137776354 - B1_Mus1 SINE Alu -41 107 1 5 751 799 259 31 119 chr3 21823543 21823863 -137775920 - B4A SINE B4 0 292 1 5 751 369 320 40 14 chr3 21824074 21824274 -137775509 - B4A SINE B4 -10 282 42 5 751 36 53 0 0 chr3 21824417 21824474 -137775309 + AT_rich Low_complexity Low_complexity 1 57 0 5 751 322 245 144 31 chr3 21824506 21824603 -137775180 - PB1D10 SINE Alu 0 117 10 5 751 214 287 73 94 chr3 21824527 21824623 -137775160 - B4A SINE B4 -118 174 81 5 751 21 57 0 0 chr3 21824782 21824817 -137774966 + AT_rich Low_complexity Low_complexity 1 35 0 5 751 255 224 17 0 chr3 21825158 21825216 -137774567 - MLT1A0 LTR MaLR -29 379 321 5 751 329 289 69 23 chr3 21825274 21825330 -137774453 + RSINE1 SINE B4 11 73 -92 5 751 2193 173 84 10 chr3 21825330 21825722 -137774061 - MTC LTR MaLR 0 421 1 5 751 329 289 69 23 chr3 21825722 21825796 -137773987 + RSINE1 SINE B4 74 146 -19 5 751 453 289 52 26 chr3 21825832 21825985 -137773798 - MLT1A0 LTR MaLR -208 157 1 5 751 237 308 0 0 chr3 21825985 21826050 -137773733 + MIRb SINE MIR 158 222 -46 5 751 705 262 6 70 chr3 21826088 21826200 -137773583 + RSINE1 SINE B4 2 106 -59 5 751 754 214 209 0 chr3 21826200 21826387 -137773396 + URR1A DNA MER1_type 1 226 0 5 751 705 262 6 70 chr3 21826387 21826446 -137773337 + RSINE1 SINE B4 107 162 -3 5 751 276 250 75 67 chr3 21826747 21826867 -137772916 - RMER15 LTR ERVL -129 446 326 5 751 2568 148 40 0 chr3 21826884 21827263 -137772520 + ORR1B1 LTR MaLR 1 394 0 5 751 342 296 111 8 chr3 21827542 21827668 -137772115 + Charlie2b DNA MER1_type 1 139 -2643 5 751 383 262 213 49 chr3 21827813 21827985 -137771798 + Charlie2b DNA MER1_type 1810 2033 -749 5 751 306 0 0 0 chr3 21827985 21828019 -137771764 + (TG)n Simple_repeat Simple_repeat 1 34 0 5 751 383 262 213 49 chr3 21828019 21828175 -137771608 + Charlie2b DNA MER1_type 2034 2192 -590 5 751 897 280 9 30 chr3 21828164 21828390 -137771393 + B4A SINE B4 10 230 -62 5 751 532 247 86 33 chr3 21828390 21828541 -137771242 + RSINE1 SINE B4 3 161 -4 5 751 220 311 168 113 chr3 21828541 21828575 -137771208 + B3 SINE B2 2 196 -20 5 751 650 280 42 5 chr3 21828708 21828923 -137770860 + Charlie2b DNA MER1_type 2462 2684 -98 5 751 764 127 15 7 chr3 21829030 21829165 -137770618 - URR1B DNA MER1_type -1 224 89 5 751 430 253 63 31 chr3 21829165 21829181 -137770602 + CYRA11_Mm Unknown Y-chromosome 210 327 -290 5 751 565 202 0 19 chr3 21829289 21829395 -137770388 + B1_Mus2 SINE Alu 4 107 -40 5 751 328 20 41 0 chr3 21829430 21829479 -137770304 + (TTTTTG)n Simple_repeat Simple_repeat 3 53 0 5 751 590 282 24 24 chr3 21829491 21829658 -137770125 - ID_B1 SINE B4 -49 175 9 5 751 686 84 0 9 chr3 21829771 21829879 -137769904 + (TTTC)n Simple_repeat Simple_repeat 2 108 0 5 751 276 254 101 12 chr3 21830183 21830288 -137769495 - PB1D10 SINE Alu -1 119 5 5 751 361 294 144 25 chr3 21830413 21830829 -137768954 - Lx7 LINE L1 -1540 6156 5652 5 751 255 292 35 78 chr3 21830843 21830958 -137768825 + PB1D7 SINE Alu 1 110 -10 5 751 429 237 100 7 chr3 21831429 21831509 -137768274 - RMER30 DNA MER1_type -3 199 117 5 751 270 0 0 0 chr3 21831509 21831539 -137768244 + (ATTG)n Simple_repeat Simple_repeat 2 31 0 5 751 2380 81 3 48 chr3 21831548 21831885 -137767898 - RLTRETN_Mm LTR ERVK 0 322 1 5 751 429 237 100 7 chr3 21831885 21831934 -137767849 - RMER30 DNA MER1_type -103 99 48 5 751 545 219 6 18 chr3 21832316 21832479 -137767304 + (TA)n Simple_repeat Simple_repeat 1 161 0 5 751 483 261 34 55 chr3 21832704 21832850 -137766933 - RSINE1 SINE B4 -18 147 5 5 751 554 285 57 36 chr3 21832989 21833182 -137766601 + B4 SINE B4 2 198 -94 5 751 397 349 0 0 chr3 21833200 21833329 -137766454 + B3A SINE B2 27 155 -43 5 751 447 63 0 0 chr3 21833329 21833392 -137766391 + (CATA)n Simple_repeat Simple_repeat 4 66 0 5 751 21 0 0 0 chr3 21833943 21833964 -137765819 + GC_rich Low_complexity Low_complexity 1 21 0 5 751 180 0 0 0 chr3 21836551 21836571 -137763212 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 5 751 512 237 59 0 chr3 21837658 21837776 -137762007 + RSINE1 SINE B4 1 125 -40 5 751 360 0 0 0 chr3 21837814 21837854 -137761929 + (CA)n Simple_repeat Simple_repeat 2 41 0 5 751 898 147 12 0 chr3 21837858 21838021 -137761762 - ORR1C2 LTR MaLR -218 166 2 5 751 254 29 0 28 chr3 21838149 21838185 -137761598 + (TTGG)n Simple_repeat Simple_repeat 2 36 0 5 751 241 267 222 0 chr3 21838187 21838277 -137761506 - PB1D10 SINE Alu -7 110 1 5 751 1100 101 0 0 chr3 21838322 21838461 -137761322 - B1_Mus1 SINE Alu -9 139 1 5 751 184 284 90 49 chr3 21839006 21839128 -137760655 + L2 LINE L2 1887 2013 -1406 5 751 928 245 9 40 chr3 21839239 21839464 -137760319 - ID_B1 SINE B4 -1 223 6 5 751 513 47 0 0 chr3 21839534 21839598 -137760185 + (TTGG)n Simple_repeat Simple_repeat 4 67 0 5 751 493 241 69 0 chr3 21839604 21839737 -137760046 - ID_B1 SINE B4 -20 204 67 5 751 356 332 84 34 chr3 21839820 21840082 -137759701 + L2 LINE L2 2686 2960 -459 5 751 527 277 85 24 chr3 21840831 21841042 -137758741 - B4A SINE B4 -66 226 3 5 751 514 133 310 0 chr3 21841499 21841612 -137758171 + B1_Mur4 SINE Alu 1 148 -2 5 751 319 296 15 13 chr3 21841729 21841842 -137757941 - B1F2 SINE Alu -29 120 2 5 751 258 295 195 47 chr3 21842550 21842678 -137757105 + RSINE1 SINE B4 19 165 0 5 751 329 340 102 75 chr3 21842773 21842915 -137756868 - MLT2D LTR ERVL -143 271 112 5 751 297 228 37 25 chr3 21842915 21842996 -137756787 + ID4 SINE ID 2 83 0 5 751 329 340 102 75 chr3 21842996 21843107 -137756676 - MLT2D LTR ERVL -303 111 11 5 751 396 0 0 0 chr3 21843222 21843266 -137756517 + (TG)n Simple_repeat Simple_repeat 1 44 0 5 751 260 83 21 0 chr3 21843268 21843316 -137756467 + (GA)n Simple_repeat Simple_repeat 2 50 0 5 751 376 224 82 0 chr3 21843321 21843406 -137756377 - B4 SINE B4 -25 267 176 5 751 331 271 62 62 chr3 21843868 21844045 -137755738 - MARNA DNA Mariner -141 445 269 5 751 1169 261 17 17 chr3 21844074 21844366 -137755417 + B4 SINE B4 1 292 0 5 751 273 209 0 0 chr3 21844371 21844438 -137755345 + (CA)n Simple_repeat Simple_repeat 2 68 0 5 751 714 353 33 7 chr3 21844534 21844805 -137754978 - B4 SINE B4 -12 280 3 5 751 2222 264 86 21 chr3 21845009 21845722 -137754061 + Lx8 LINE L1 6351 7109 -364 5 751 604 278 0 110 chr3 21845956 21846138 -137753645 + RSINE1 SINE B4 4 165 0 5 751 244 215 45 15 chr3 21846190 21846256 -137753527 + Lx8 LINE L1 7395 7462 -11 5 751 280 288 15 0 chr3 21847683 21847749 -137752034 - RSINE1 SINE B4 -17 148 82 5 751 723 280 20 31 chr3 21847861 21848056 -137751727 - ID_B1 SINE B4 -26 198 6 5 751 264 91 0 0 chr3 21848509 21848553 -137751230 + (CCTG)n Simple_repeat Simple_repeat 1 44 0 5 751 450 0 0 0 chr3 21848899 21848949 -137750834 + (TC)n Simple_repeat Simple_repeat 1 50 0 5 751 671 263 34 53 chr3 21850201 21850294 -137749489 + B4A SINE B4 2 94 -198 5 751 198 0 0 0 chr3 21850294 21850316 -137749467 + (TTG)n Simple_repeat Simple_repeat 2 23 0 5 751 671 263 34 53 chr3 21850316 21850431 -137749352 + B4A SINE B4 95 206 -86 5 751 255 61 0 0 chr3 21850946 21850979 -137748804 + (TTTTG)n Simple_repeat Simple_repeat 3 35 0 5 751 1003 126 0 0 chr3 21850979 21851122 -137748661 - B1_Mus2 SINE Alu -4 143 1 5 751 567 107 0 0 chr3 21851178 21851262 -137748521 + (GGGA)n Simple_repeat Simple_repeat 1 84 0 5 751 213 108 0 0 chr3 21852677 21852714 -137747069 + (A)n Simple_repeat Simple_repeat 1 37 0 5 751 1169 75 0 7 chr3 21852900 21853048 -137746735 - B1_Mm SINE Alu 0 147 1 5 751 555 290 27 7 chr3 21853291 21853437 -137746346 - RSINE1 SINE B4 -14 151 3 5 751 267 264 28 0 chr3 21853585 21853657 -137746126 + (TGGA)n Simple_repeat Simple_repeat 4 77 0 5 751 432 0 0 0 chr3 21853678 21853726 -137746057 + (TAGA)n Simple_repeat Simple_repeat 3 50 0 5 751 186 133 0 0 chr3 21853763 21853793 -137745990 + (TGGA)n Simple_repeat Simple_repeat 4 33 0 5 751 227 154 26 0 chr3 21854916 21854955 -137744828 + ID4 SINE ID 6 45 -38 5 751 3411 33 5 0 chr3 21855025 21855419 -137744364 - MTA_Mm LTR MaLR 0 396 1 5 751 1986 75 3 105 chr3 21855419 21855551 -137744232 - MTA_Mm-int LTR MaLR 0 1098 991 5 751 1177 28 13 40 chr3 21855551 21855701 -137744082 - B1_Mus2 SINE Alu 0 147 2 5 751 1986 75 3 105 chr3 21855701 21855931 -137743852 - MTA_Mm-int LTR MaLR -108 990 774 5 751 1621 132 15 68 chr3 21855931 21856271 -137743512 - RLTRETN_Mm LTR ERVK 0 322 1 5 751 5687 45 18 0 chr3 21856271 21857035 -137742748 - MTA_Mm-int LTR MaLR -320 778 1 5 751 4022 38 13 0 chr3 21857037 21857506 -137742277 - MT2C_Mm LTR ERVL 0 475 1 5 751 187 330 170 0 chr3 21857550 21857662 -137742121 - MIR SINE MIR -89 173 43 5 751 29 0 0 0 chr3 21858154 21858183 -137741600 + AT_rich Low_complexity Low_complexity 1 29 0 5 751 1113 268 64 14 chr3 21858404 21858749 -137741034 - MTEa LTR MaLR -10 369 8 5 751 320 306 59 7 chr3 21859571 21859706 -137740077 - B1F SINE Alu -2 147 6 5 751 702 288 15 20 chr3 21859595 21859790 -137739993 - ID_B1 SINE B4 -26 198 5 5 751 332 286 0 0 chr3 21861242 21861326 -137738457 - B4A SINE B4 -49 243 160 6 751 421 167 24 12 chr3 21861644 21861729 -137738054 - B4 SINE B4 -204 88 3 6 751 42 20 0 0 chr3 21863304 21863353 -137736430 + AT_rich Low_complexity Low_complexity 1 49 0 6 751 206 146 24 0 chr3 21863790 21863831 -137735952 + (CAAA)n Simple_repeat Simple_repeat 1 42 0 6 751 308 43 22 0 chr3 21865035 21865081 -137734702 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 6 751 731 88 9 0 chr3 21865593 21865706 -137734077 + (TC)n Simple_repeat Simple_repeat 2 115 0 6 751 239 269 0 0 chr3 21865706 21865784 -137733999 + (TG)n Simple_repeat Simple_repeat 2 79 0 6 751 713 277 71 46 chr3 21866129 21866409 -137733374 + B4A SINE B4 6 292 0 6 751 729 107 14 7 chr3 21868003 21868144 -137731639 + (TG)n Simple_repeat Simple_repeat 2 143 0 6 751 542 284 53 87 chr3 21868163 21868429 -137731354 - B4A SINE B4 -35 257 1 6 751 219 211 16 66 chr3 21868484 21868545 -137731238 + ID4 SINE ID 9 66 -17 6 751 240 246 61 15 chr3 21868917 21868983 -137730800 - MamSINE1 SINE tRNA -208 82 14 6 751 252 268 11 58 chr3 21869892 21869979 -137729804 + MIRc SINE MIR 71 153 -115 6 751 201 121 0 0 chr3 21870184 21870217 -137729566 + (CA)n Simple_repeat Simple_repeat 1 33 0 6 751 746 259 60 34 chr3 21870235 21870503 -137729280 - B4A SINE B4 -16 276 2 6 751 2068 155 11 8 chr3 21870679 21871037 -137728746 + ORR1B2 LTR MaLR 1 359 -8 6 751 207 0 0 0 chr3 21871353 21871376 -137728407 + (CAA)n Simple_repeat Simple_repeat 3 25 0 6 751 479 268 35 42 chr3 21871843 21871987 -137727796 - B1F SINE Alu 0 149 7 6 751 973 231 5 5 chr3 21871860 21872064 -137727719 - ID_B1 SINE B4 -11 213 10 6 751 711 301 34 47 chr3 21872692 21872988 -137726795 + B4 SINE B4 1 292 0 6 751 1185 274 42 72 chr3 21873196 21873628 -137726155 - MTD LTR MaLR 0 419 1 6 751 1218 251 74 26 chr3 21873628 21873966 -137725817 + MTEa LTR MaLR 12 365 -14 6 751 465 252 22 52 chr3 21874247 21874381 -137725402 + RSINE1 SINE B4 3 132 -33 6 751 405 58 0 0 chr3 21874389 21874441 -137725342 + (CA)n Simple_repeat Simple_repeat 2 53 0 6 751 29 0 0 0 chr3 21874464 21874493 -137725290 + AT_rich Low_complexity Low_complexity 1 29 0 6 751 323 260 79 43 chr3 21874624 21874815 -137724968 + L1M4 LINE L1 4155 4344 -1799 6 751 204 40 0 0 chr3 21875409 21875434 -137724349 + (TTCC)n Simple_repeat Simple_repeat 4 28 0 6 751 3439 232 60 84 chr3 21876006 21877071 -137722712 + RMER1C Other Other 376 1218 -124 6 751 201 74 0 0 chr3 21877071 21877098 -137722685 + (TTTAA)n Simple_repeat Simple_repeat 3 29 0 6 751 3439 227 51 82 chr3 21877098 21877220 -137722563 + RMER1C Other Other 1219 1342 0 6 751 22 0 0 0 chr3 21877234 21877256 -137722527 + AT_rich Low_complexity Low_complexity 1 22 0 6 751 469 352 47 61 chr3 21877259 21877555 -137722228 + B4A SINE B4 1 292 0 6 751 216 0 0 0 chr3 21877573 21877597 -137722186 + (CA)n Simple_repeat Simple_repeat 2 25 0 6 751 719 266 94 0 chr3 21877632 21877835 -137721948 + ID_B1 SINE B4 3 224 0 6 751 298 184 0 26 chr3 21877842 21877863 -137721920 + polypurine Low_complexity Low_complexity 4 24 0 6 751 1289 17 40 0 chr3 21877863 21878036 -137721747 + (GGGA)n Simple_repeat Simple_repeat 1 180 0 6 751 298 184 0 26 chr3 21878036 21878092 -137721691 + GA-rich Low_complexity Low_complexity 25 79 0 6 751 328 197 26 26 chr3 21878565 21878643 -137721140 - PB1D10 SINE Alu -17 100 23 6 751 380 323 19 19 chr3 21879349 21879510 -137720273 + GA-rich Low_complexity Low_complexity 5 165 0 6 751 493 276 0 0 chr3 21879743 21879848 -137719935 - RSINE1 SINE B4 -15 150 46 6 751 354 303 187 11 chr3 21879904 21880091 -137719692 + ID_B1 SINE B4 3 222 -2 6 751 313 200 23 12 chr3 21880091 21880177 -137719606 + GA-rich Low_complexity Low_complexity 1 87 0 6 751 459 243 95 48 chr3 21880280 21880581 -137719202 + ORR1E LTR MaLR 6 353 -26 6 751 349 250 14 0 chr3 21880604 21880676 -137719107 + ID SINE ID 6 78 -146 6 751 234 288 91 73 chr3 21880697 21880862 -137718921 + MLT2B4 LTR ERVL 314 481 -75 6 751 281 250 0 0 chr3 21880896 21880952 -137718831 + RSINE1 SINE B4 10 65 -100 6 751 288 0 0 0 chr3 21881095 21881127 -137718656 + (CA)n Simple_repeat Simple_repeat 2 33 0 6 751 273 311 19 0 chr3 21881194 21881300 -137718483 + L1M7 LINE L1 1406 1513 -4705 6 751 629 301 23 32 chr3 21881571 21881787 -137717996 + ID_B1 SINE B4 11 224 0 6 751 1552 42 0 0 chr3 21881820 21882012 -137717771 - L1Md_A LINE L1 0 6582 6391 6 751 336 218 27 13 chr3 21882462 21882564 -137717219 - L1MA5 LINE L1 -4 6296 6191 6 751 718 251 126 0 chr3 21882674 21882857 -137716926 - ID_B1 SINE B4 0 224 19 6 751 659 311 31 27 chr3 21883737 21883998 -137715785 + B4A SINE B4 15 276 -16 6 751 234 0 0 0 chr3 21884001 21884027 -137715756 + (CA)n Simple_repeat Simple_repeat 2 27 0 6 751 259 258 486 11 chr3 21884214 21884391 -137715392 - MER47B DNA MER2_type -2 416 156 6 751 195 42 0 0 chr3 21884512 21884536 -137715247 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 6 751 462 329 24 0 chr3 21884690 21884857 -137714926 - ID_B1 SINE B4 -53 171 1 6 751 423 248 28 28 chr3 21886151 21886259 -137713524 + ID_B1 SINE B4 2 109 -115 6 751 528 308 51 10 chr3 21886555 21886752 -137713031 - MLT2D LTR ERVL -198 216 12 6 751 573 314 41 50 chr3 21888338 21888556 -137711227 - ID_B1 SINE B4 -8 216 1 6 751 273 296 80 15 chr3 21888829 21888966 -137710817 + Charlie19a DNA Charlie 91 236 -150 6 752 319 349 0 38 chr3 21889314 21889445 -137710338 + RSINE1 SINE B4 11 136 -29 6 752 420 241 45 27 chr3 21889730 21889841 -137709942 - PB1D10 SINE Alu 0 117 5 6 752 404 343 35 10 chr3 21890015 21890218 -137709565 + ID_B1 SINE B4 2 209 -15 6 752 270 0 0 0 chr3 21890301 21890331 -137709452 + (CA)n Simple_repeat Simple_repeat 2 31 0 6 752 892 249 86 0 chr3 21890347 21890580 -137709203 + B4A SINE B4 2 254 -38 6 752 1047 44 66 0 chr3 21891451 21891587 -137708196 + B1_Mm SINE Alu 1 145 -2 6 752 183 42 0 0 chr3 21891587 21891611 -137708172 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 6 752 407 306 0 26 chr3 21891688 21891826 -137707957 - B1F SINE Alu -20 129 1 6 752 568 140 9 9 chr3 21891838 21891946 -137707837 + CT-rich Low_complexity Low_complexity 1 108 0 6 752 355 256 0 23 chr3 21891953 21892041 -137707742 - B4A SINE B4 -12 280 195 6 752 356 258 21 0 chr3 21893467 21893560 -137706223 - ID_B1 SINE B4 0 224 130 6 752 1012 149 0 0 chr3 21893835 21893983 -137705800 - B1_Mur3 SINE Alu 0 149 2 6 752 714 267 64 5 chr3 21894015 21894203 -137705580 + ID_B1 SINE B4 12 210 -14 6 752 236 53 26 0 chr3 21894439 21894477 -137705306 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 6 752 341 311 86 20 chr3 21895142 21895293 -137704490 + ID_B1 SINE B4 2 162 -62 6 752 1177 81 0 0 chr3 21895299 21895460 -137704323 + B2_Mm2 SINE B2 1 161 -34 6 752 270 0 0 0 chr3 21895463 21895493 -137704290 + (TAAA)n Simple_repeat Simple_repeat 4 33 0 6 752 639 98 0 0 chr3 21895494 21895586 -137704197 + (GA)n Simple_repeat Simple_repeat 2 93 0 6 752 642 26 0 0 chr3 21895616 21895692 -137704091 + (GGAA)n Simple_repeat Simple_repeat 4 79 0 6 752 239 200 40 0 chr3 21895694 21895744 -137704039 + GA-rich Low_complexity Low_complexity 5 56 0 6 752 376 170 21 21 chr3 21896197 21896293 -137703490 + (TATG)n Simple_repeat Simple_repeat 3 98 0 6 752 551 301 72 0 chr3 21896293 21896446 -137703337 - RSINE1 SINE B4 0 165 2 6 752 2886 79 2 25 chr3 21897247 21897293 -137702490 - RMER16 LTR ERVK 0 533 494 6 752 3417 17 17 2 chr3 21897293 21897698 -137702085 + IAPLTR2a LTR ERVK 1 411 0 6 752 2886 79 2 25 chr3 21897698 21898082 -137701701 - RMER16 LTR ERVK -40 493 113 6 752 749 250 5 52 chr3 21898106 21898300 -137701483 - ID_B1 SINE B4 -39 185 1 6 752 247 218 105 84 chr3 21898527 21898622 -137701161 + MT2B LTR ERVL 151 247 -354 6 752 365 202 0 203 chr3 21898563 21898706 -137701077 + B1_Mur4 SINE Alu 37 150 0 6 752 1101 108 0 0 chr3 21899477 21899635 -137700148 + B2_Mm2 SINE B2 2 159 -36 6 752 477 0 0 0 chr3 21899635 21899688 -137700095 + (TAAAA)n Simple_repeat Simple_repeat 5 57 0 6 752 253 0 0 51 chr3 21900057 21900096 -137699687 + (TTTTTG)n Simple_repeat Simple_repeat 6 42 0 6 752 1150 41 7 7 chr3 21900096 21900242 -137699541 - B1_Mm SINE Alu 0 147 2 6 752 183 256 111 0 chr3 21900269 21900359 -137699424 - MIRc SINE MIR -41 227 128 6 752 241 296 41 50 chr3 21901159 21901280 -137698503 + RSINE1 SINE B4 5 124 -41 6 752 309 26 0 0 chr3 21901280 21901318 -137698465 + (CA)n Simple_repeat Simple_repeat 2 39 0 6 752 25 0 0 0 chr3 21901333 21901358 -137698425 + AT_rich Low_complexity Low_complexity 1 25 0 6 752 2170 101 3 89 chr3 21901783 21901834 -137697949 - ORR1A2 LTR MaLR 0 327 277 6 752 1366 96 5 0 chr3 21901834 21902022 -137697761 - B2_Mm1a SINE B2 -4 189 1 6 752 2170 101 3 89 chr3 21902022 21902328 -137697455 - ORR1A2 LTR MaLR -51 276 1 6 752 227 220 0 39 chr3 21902731 21902800 -137696983 + PB1D7 SINE Alu 22 88 -29 6 752 1644 311 58 27 chr3 21902849 21903450 -137696333 + Lx8 LINE L1 6616 7235 -238 6 752 408 261 50 34 chr3 21903744 21903863 -137695920 + ID_B1 SINE B4 95 215 -9 6 752 727 270 49 0 chr3 21904210 21904414 -137695369 + B3 SINE B2 1 214 -2 7 752 2025 176 58 32 chr3 21904470 21904905 -137694878 + RLTR41 LTR ERV1 1 446 0 7 752 388 315 68 36 chr3 21904962 21905212 -137694571 - MLT1E1A LTR MaLR -8 672 415 7 752 219 114 0 0 chr3 21905498 21905533 -137694250 + (GGGAGA)n Simple_repeat Simple_repeat 4 38 0 7 752 416 286 35 18 chr3 21905546 21905660 -137694123 + PB1D10 SINE Alu 2 117 0 7 752 668 54 97 9 chr3 21906094 21906207 -137693576 - L1_Mus1 LINE L1 -3 6564 6442 7 752 523 235 0 25 chr3 21906207 21906329 -137693454 + B1_Mur2 SINE Alu 31 149 0 7 752 1125 80 0 0 chr3 21906330 21906468 -137693315 + B1_Mus1 SINE Alu 1 138 -10 7 752 209 33 33 0 chr3 21906468 21906498 -137693285 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 7 752 448 237 136 62 chr3 21906623 21906785 -137692998 - MTEa LTR MaLR -190 189 16 7 752 300 256 129 41 chr3 21906784 21906955 -137692828 - RMER10A LTR ERVL -25 417 232 7 752 311 271 7 11 chr3 21907662 21907772 -137692011 + MLT2D LTR ERVL 3 115 -349 7 752 443 100 0 14 chr3 21907895 21907966 -137691817 + (TTTC)n Simple_repeat Simple_repeat 3 72 0 7 752 464 0 18 0 chr3 21908092 21908148 -137691635 + (TAGA)n Simple_repeat Simple_repeat 2 58 0 7 752 330 222 12 24 chr3 21908230 21908313 -137691470 - B3 SINE B2 -1 215 134 7 752 686 291 27 6 chr3 21908451 21908634 -137691149 - ID_B1 SINE B4 -23 201 15 7 752 285 146 0 0 chr3 21908657 21908705 -137691078 + (T)n Simple_repeat Simple_repeat 1 48 0 7 752 391 325 77 34 chr3 21908738 21908945 -137690838 + MLT2D LTR ERVL 155 370 -44 7 752 3519 18 5 0 chr3 21909763 21910157 -137689626 - MTA_Mm LTR MaLR 0 396 1 7 752 9287 36 2 2 chr3 21910157 21911255 -137688528 - MTA_Mm-int LTR MaLR 0 1098 1 7 752 3509 18 5 0 chr3 21911256 21911649 -137688134 - MTA_Mm LTR MaLR -1 395 1 7 752 276 53 0 0 chr3 21911676 21911714 -137688069 + (TAA)n Simple_repeat Simple_repeat 2 39 0 7 752 469 291 6 87 chr3 21911726 21911899 -137687884 + RSINE1 SINE B4 7 165 0 7 752 2712 68 0 21 chr3 21912641 21913015 -137686768 + L1Md_F2 LINE L1 6216 6581 -1 7 752 1222 36 0 0 chr3 21913035 21913175 -137686608 + B1_Mus1 SINE Alu 1 140 -8 7 752 341 32 47 16 chr3 21913183 21913247 -137686536 + (CAAA)n Simple_repeat Simple_repeat 1 66 0 7 752 385 223 165 26 chr3 21913255 21913370 -137686413 + ID_B1 SINE B4 93 223 -1 7 752 1930 245 7 0 chr3 21913440 21913857 -137685926 - MTC LTR MaLR -1 420 1 7 752 1378 85 11 0 chr3 21914485 21914673 -137685110 - B2_Mm1a SINE B2 -3 190 1 7 752 218 271 10 133 chr3 21914684 21914782 -137685001 - PB1D10 SINE Alu -5 112 27 7 752 601 267 21 48 chr3 21914700 21914889 -137684894 - ID_B1 SINE B4 -40 184 1 7 752 501 270 153 51 chr3 21915058 21915312 -137684471 + B4A SINE B4 1 280 -12 7 752 554 255 50 35 chr3 21915847 21916046 -137683737 + ORR1E LTR MaLR 1 202 -157 7 752 354 283 20 20 chr3 21916061 21916162 -137683621 + ORR1E LTR MaLR 270 370 -9 7 752 322 221 0 14 chr3 21916385 21916454 -137683329 + B1F1 SINE Alu 41 108 -41 7 752 360 43 0 0 chr3 21917415 21917461 -137682322 + (TG)n Simple_repeat Simple_repeat 2 47 0 7 752 22 70 0 0 chr3 21917517 21917560 -137682223 + AT_rich Low_complexity Low_complexity 1 43 0 7 752 226 150 0 0 chr3 21917651 21917691 -137682092 - MTD LTR MaLR 0 419 380 7 752 1632 162 53 79 chr3 21917698 21918053 -137681730 + ORR1B1 LTR MaLR 41 386 -8 7 752 1411 228 85 16 chr3 21918050 21918415 -137681368 - MTD LTR MaLR -29 390 1 7 752 307 296 25 0 chr3 21918415 21918493 -137681290 - RSINE1 SINE B4 -84 81 2 7 752 439 301 52 31 chr3 21918493 21918657 -137681126 - B4 SINE B4 -60 232 65 7 752 2249 104 3 49 chr3 21918775 21919120 -137680663 + ORR1A4 LTR MaLR 1 329 0 7 752 1221 54 0 0 chr3 21919176 21919323 -137680460 - B1_Mus2 SINE Alu 0 147 1 7 752 844 218 95 11 chr3 21919379 21919569 -137680214 + ID_B1 SINE B4 2 207 -17 7 752 366 91 0 0 chr3 21921790 21921845 -137677938 + (TA)n Simple_repeat Simple_repeat 2 56 0 7 752 241 333 75 34 chr3 21922513 21922752 -137677031 + MamRep137 DNA TcMar? 70 318 -126 7 752 473 335 69 15 chr3 21923444 21923647 -137676136 + B4A SINE B4 56 269 -23 7 752 390 91 0 0 chr3 21923716 21923771 -137676012 + (GAAA)n Simple_repeat Simple_repeat 2 56 0 7 752 342 286 10 20 chr3 21923794 21923894 -137675889 + B3A SINE B2 35 133 -65 7 752 23 33 0 0 chr3 21923907 21923937 -137675846 + AT_rich Low_complexity Low_complexity 1 30 0 7 752 22 56 0 0 chr3 21924035 21924071 -137675712 + AT_rich Low_complexity Low_complexity 1 36 0 7 752 508 250 17 0 chr3 21924207 21924327 -137675456 + ID_B1 SINE B4 84 205 -19 7 752 414 0 0 0 chr3 21924337 21924383 -137675400 + (CA)n Simple_repeat Simple_repeat 2 47 0 7 752 2174 163 26 52 chr3 21924446 21924911 -137674872 + RLTR11B LTR ERVK 1 453 0 7 752 199 87 21 42 chr3 21924980 21925028 -137674755 + (TTG)n Simple_repeat Simple_repeat 3 49 0 7 752 1758 179 34 36 chr3 21925038 21925426 -137674357 - MTB_Mm LTR MaLR -20 387 1 7 752 243 351 25 42 chr3 21925484 21925603 -137674180 - PB1D7 SINE Alu -3 117 1 7 752 307 270 53 91 chr3 21925894 21926102 -137673681 + L1M5 LINE L1 4453 4652 -1494 7 752 395 240 0 68 chr3 21926106 21926209 -137673574 + RSINE1 SINE B4 2 97 -68 7 752 237 65 0 0 chr3 21926538 21926569 -137673214 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 7 752 297 0 0 0 chr3 21926590 21926623 -137673160 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 7 752 487 111 0 53 chr3 21926631 21926726 -137673057 - B1_Mur4 SINE Alu -18 132 43 7 752 234 0 0 158 chr3 21926729 21926843 -137672940 + (CTCTG)n Simple_repeat Simple_repeat 5 100 0 7 752 442 219 16 32 chr3 21926944 21927067 -137672716 - ID_B1 SINE B4 -1 223 103 7 752 250 220 0 0 chr3 21927108 21927158 -137672625 + MLT1F LTR MaLR 499 548 0 7 752 1546 43 38 0 chr3 21927231 21927415 -137672368 + B2_Mm2 SINE B2 2 192 -3 7 752 358 311 82 75 chr3 21927565 21927833 -137671950 - MLT2F LTR ERVL -271 392 123 7 752 589 227 8 0 chr3 21927853 21927972 -137671811 - ID_B1 SINE B4 -12 212 93 7 752 291 312 96 54 chr3 21927928 21928094 -137671689 - MLT2F LTR ERVL -490 173 1 7 752 1662 214 111 40 chr3 21928322 21928798 -137670985 + RLTR20B3 LTR ERVK 21 530 -47 7 752 358 272 76 46 chr3 21928828 21928959 -137670824 + ID_B1 SINE B4 85 219 -5 7 752 450 217 225 0 chr3 21929102 21929222 -137670561 + B1F1 SINE Alu 3 149 0 7 752 497 193 9 9 chr3 21929390 21929505 -137670278 + RLTR28B LTR ERVL 69 183 -298 7 752 305 132 14 81 chr3 21929659 21929733 -137670050 + RLTR28B LTR ERVL 442 510 -14 7 752 186 43 0 0 chr3 21930007 21930030 -137669753 + (CAAAA)n Simple_repeat Simple_repeat 4 26 0 7 752 287 263 0 0 chr3 21930067 21930143 -137669640 + PB1D10 SINE Alu 42 117 0 7 752 474 101 0 0 chr3 21930147 21930216 -137669567 + (GGGA)n Simple_repeat Simple_repeat 4 72 0 7 752 601 286 25 38 chr3 21930336 21930496 -137669287 + RSINE1 SINE B4 8 165 0 7 752 1057 108 0 0 chr3 21930538 21930686 -137669097 - B1_Mus1 SINE Alu 0 148 1 7 752 636 275 160 35 chr3 21930798 21931054 -137668729 + B4A SINE B4 5 292 0 7 752 441 311 125 41 chr3 21931098 21931443 -137668340 + L1M5 LINE L1 5428 5801 -378 7 752 890 251 134 41 chr3 21931489 21931642 -137668141 - ORR1E LTR MaLR -4 355 187 7 752 378 0 0 0 chr3 21931642 21931684 -137668099 + (GA)n Simple_repeat Simple_repeat 2 43 0 7 752 890 251 134 41 chr3 21931684 21931850 -137667933 - ORR1E LTR MaLR -173 186 6 7 752 321 310 163 0 chr3 21932178 21932307 -137667476 + ID_B1 SINE B4 22 171 -53 7 752 1359 74 0 0 chr3 21932483 21932672 -137667111 + MT2C_Mm LTR ERVL 2 190 -285 7 752 305 237 24 84 chr3 21933373 21933456 -137666327 - ID4 SINE ID -4 79 2 7 752 307 269 157 0 chr3 21933516 21933619 -137666164 + B1_Mus1 SINE Alu 3 122 -26 7 752 207 0 0 0 chr3 21933619 21933642 -137666141 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 7 752 254 200 43 188 chr3 21934100 21934217 -137665566 + PB1D10 SINE Alu 11 110 -7 7 752 390 204 106 10 chr3 21934639 21934743 -137665040 + MTE2b LTR MaLR 1 114 -265 7 752 1019 169 15 125 chr3 21934756 21935020 -137664763 + RMER15 LTR ERVL 43 277 -298 7 752 1162 192 4 22 chr3 21935099 21935328 -137664455 + URR1B DNA MER1_type 1 225 0 7 752 317 236 136 16 chr3 21935944 21936069 -137663714 + B1F1 SINE Alu 2 141 -8 7 752 390 129 0 0 chr3 21936287 21936349 -137663434 + (TG)n Simple_repeat Simple_repeat 1 62 0 7 752 1144 82 0 0 chr3 21936548 21936694 -137663089 + B1_Mus2 SINE Alu 2 147 0 7 752 2415 105 34 49 chr3 21936996 21937405 -137662378 + RLTR9D LTR ERVK 1 403 0 7 752 1160 202 60 114 chr3 21937423 21937808 -137661975 - RLTR19-int LTR ERVK -1757 4380 4017 7 752 1690 214 63 56 chr3 21937785 21938349 -137661434 - RLTR19-int LTR ERVK -2176 3961 3559 7 752 452 16 0 31 chr3 21938386 21938451 -137661332 - B1_Mm SINE Alu 0 147 85 7 752 3125 160 26 14 chr3 21938430 21939008 -137660775 + RLTR17 LTR ERVK 12 596 -96 7 752 243 0 0 0 chr3 21939036 21939063 -137660720 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 7 752 1680 248 111 87 chr3 21939082 21940360 -137659423 - RLTR19-int LTR ERVK -2573 3564 2014 7 752 195 125 0 0 chr3 21940371 21940411 -137659372 + (TTTTTG)n Simple_repeat Simple_repeat 1 40 0 7 752 243 0 0 0 chr3 21940416 21940443 -137659340 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 7 752 982 89 30 0 chr3 21940443 21940578 -137659205 - B1_Mus1 SINE Alu -8 140 2 7 752 533 212 13 27 chr3 21940578 21940728 -137659055 - RLTR19-int LTR ERVK -3505 2017 1870 7 752 1127 266 195 98 chr3 21940922 21941033 -137658750 - MTC-int LTR MaLR -33 1225 1145 7 752 1211 55 0 0 chr3 21941033 21941179 -137658604 - B1_Mm SINE Alu 0 147 2 7 752 1127 266 195 98 chr3 21941179 21941338 -137658445 - MTC-int LTR MaLR -114 1144 1015 7 752 198 0 0 0 chr3 21941338 21941360 -137658423 + (TAAAA)n Simple_repeat Simple_repeat 2 23 0 8 752 1127 266 195 98 chr3 21941360 21941781 -137658002 - MTC-int LTR MaLR -244 1014 466 7 752 529 199 52 98 chr3 21941781 21941954 -137657829 - RLTR19-int LTR ERVK -4977 1160 996 7 752 255 218 71 18 chr3 21941944 21942000 -137657783 - RLTR42-int LTR ERVK -3727 1795 1737 8 752 693 218 95 108 chr3 21942246 21942385 -137657398 - RLTR42-int LTR ERVK -4188 1334 1189 8 752 1220 68 82 33 chr3 21942385 21942568 -137657215 - B2_Mm1t SINE B2 0 193 2 8 752 693 218 95 108 chr3 21942568 21942659 -137657124 - RLTR42-int LTR ERVK -4334 1188 1107 8 752 273 176 33 66 chr3 21942759 21942850 -137656933 - RLTR42-int LTR ERVK -5252 885 798 8 752 328 220 96 29 chr3 21943763 21943899 -137655884 + Lx7 LINE L1 7514 7658 -38 8 752 901 117 0 0 chr3 21944052 21944180 -137655603 - L1_Mus4 LINE L1 -470 6166 6039 8 752 228 86 0 0 chr3 21944246 21944281 -137655502 + (CA)n Simple_repeat Simple_repeat 2 36 0 8 752 588 87 0 0 chr3 21944281 21944373 -137655410 + (GA)n Simple_repeat Simple_repeat 1 92 0 8 752 1214 54 0 0 chr3 21944550 21944697 -137655086 - B1_Mus2 SINE Alu 0 147 1 8 752 890 162 202 16 chr3 21944929 21945117 -137654666 + URR1B DNA MER1_type 2 224 -1 8 752 1353 86 27 0 chr3 21945686 21945872 -137653911 - B2_Mm1t SINE B2 -2 191 1 8 752 396 317 16 0 chr3 21945993 21946116 -137653667 + ID_B1 SINE B4 92 216 -8 8 752 1763 106 293 8 chr3 21946189 21946541 -137653242 + RLTR44E LTR ERVK 1 452 0 8 752 285 51 0 0 chr3 21946665 21946704 -137653079 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 8 752 280 253 32 32 chr3 21946935 21947029 -137652754 - B1F SINE Alu -7 142 49 8 752 287 290 0 0 chr3 21947153 21947222 -137652561 + ID4_ SINE ID 1 69 -14 8 752 180 111 0 0 chr3 21947223 21947250 -137652533 + (ATGGTG)n Simple_repeat Simple_repeat 4 30 0 8 752 1787 176 35 43 chr3 21947461 21947489 -137652294 - ORR1D1 LTR MaLR 0 374 347 8 752 192 77 0 0 chr3 21947489 21947515 -137652268 + (CAA)n Simple_repeat Simple_repeat 2 27 0 8 752 1787 176 35 43 chr3 21947515 21947859 -137651924 - ORR1D1 LTR MaLR -28 346 6 8 752 198 0 0 0 chr3 21947885 21947907 -137651876 + (TTCC)n Simple_repeat Simple_repeat 1 22 0 8 752 725 195 0 12 chr3 21947907 21948073 -137651710 + CT-rich Low_complexity Low_complexity 1 164 0 8 752 581 272 13 13 chr3 21948073 21948222 -137651561 - B1_Mur4 SINE Alu 0 150 2 8 752 256 222 42 0 chr3 21948797 21948869 -137650914 + RLTR25B LTR ERVK 410 484 -544 8 752 594 149 9 36 chr3 21948826 21948922 -137650861 + B1_Mus2 SINE Alu 40 136 -11 8 752 234 0 0 0 chr3 21948922 21948948 -137650835 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 8 752 594 149 9 36 chr3 21948948 21948962 -137650821 + B1_Mus2 SINE Alu 137 147 0 8 752 312 276 29 39 chr3 21948982 21949084 -137650699 + ID_B1 SINE B4 9 109 -115 8 752 210 273 0 0 chr3 21949386 21949441 -137650342 + T-rich Low_complexity Low_complexity 1 55 0 8 752 310 263 0 13 chr3 21949555 21949632 -137650151 - ID4_ SINE ID -6 77 2 8 752 4706 172 39 55 chr3 21949843 21950759 -137649024 - RMER19B LTR ERVK 0 902 1 8 752 22 0 0 0 chr3 21951479 21951501 -137648282 + AT_rich Low_complexity Low_complexity 1 22 0 8 752 233 271 11 23 chr3 21951661 21951748 -137648035 + Lx8 LINE L1 7386 7471 -2 8 752 448 281 40 110 chr3 21951887 21952087 -137647696 + B3A SINE B2 1 186 -9 8 752 802 184 43 0 chr3 21952098 21952239 -137647544 + B1_Mur4 SINE Alu 2 148 -2 8 752 240 35 0 0 chr3 21952600 21952629 -137647154 + (CA)n Simple_repeat Simple_repeat 1 29 0 8 752 416 288 104 0 chr3 21952823 21952948 -137646835 + B1_Mus2 SINE Alu 1 138 -9 8 752 707 108 9 0 chr3 21952962 21953073 -137646710 + (GGA)n Simple_repeat Simple_repeat 3 114 0 8 752 198 0 0 0 chr3 21953172 21953194 -137646589 + (CAAAAA)n Simple_repeat Simple_repeat 2 23 0 8 752 198 103 0 0 chr3 21953203 21953232 -137646551 + (CA)n Simple_repeat Simple_repeat 1 29 0 8 752 1483 211 70 46 chr3 21953306 21953679 -137646104 + ORR1C2 LTR MaLR 3 384 0 8 752 31 0 0 0 chr3 21953730 21953761 -137646022 + AT_rich Low_complexity Low_complexity 1 31 0 8 752 511 204 0 23 chr3 21953775 21953946 -137645837 + (TG)n Simple_repeat Simple_repeat 2 168 0 8 752 385 295 115 0 chr3 21953959 21954098 -137645685 - RSINE1 SINE B4 -6 159 5 8 752 266 266 242 11 chr3 21954121 21954216 -137645567 - ID_B1 SINE B4 -5 219 103 8 752 663 249 48 16 chr3 21954809 21954997 -137644786 + ID_B1 SINE B4 8 201 -23 8 752 21 0 0 0 chr3 21954999 21955020 -137644763 + AT_rich Low_complexity Low_complexity 1 21 0 8 752 21 0 0 0 chr3 21955123 21955144 -137644639 + AT_rich Low_complexity Low_complexity 1 21 0 8 752 1847 140 16 0 chr3 21955183 21955497 -137644286 - ORR1A2 LTR MaLR -8 319 1 8 752 218 362 36 30 chr3 21955637 21955802 -137643981 - L3b LINE CR1 -47 435 270 8 752 2856 75 5 29 chr3 21956200 21956659 -137643124 - RMER16 LTR ERVK 0 533 1 8 752 540 190 103 0 chr3 21956830 21956946 -137642837 - B1_Mur2 SINE Alu -7 142 15 8 752 680 220 7 0 chr3 21957003 21957144 -137642639 + B1_Mur4 SINE Alu 1 142 -8 8 752 231 36 0 0 chr3 21957144 21957172 -137642611 + (CCAA)n Simple_repeat Simple_repeat 2 29 0 8 752 230 170 63 99 chr3 21957923 21958034 -137641749 - Lx9 LINE L1 -130 7514 7408 8 752 2114 66 17 3 chr3 21958153 21958460 -137641323 + L1_Mus2 LINE L1 6267 6566 0 8 752 228 246 87 0 chr3 21958579 21958648 -137641135 + B3A SINE B2 27 101 -97 8 752 475 234 279 34 chr3 21959152 21959356 -137640427 + RodERV21-int LTR ERV1 11 264 -4727 8 752 426 291 92 56 chr3 21959354 21959605 -137640178 + RodERV21-int LTR ERV1 460 719 -4272 8 752 313 343 37 0 chr3 21959917 21960025 -137639758 + ID_B1 SINE B4 3 114 -110 8 752 378 42 0 0 chr3 21960683 21960731 -137639052 + (TG)n Simple_repeat Simple_repeat 2 49 0 8 752 578 238 165 6 chr3 21961336 21961518 -137638265 + ID_B1 SINE B4 5 215 -9 8 752 207 0 0 0 chr3 21961892 21961915 -137637868 + (T)n Simple_repeat Simple_repeat 1 23 0 8 752 324 0 0 0 chr3 21961916 21961952 -137637831 + (TG)n Simple_repeat Simple_repeat 2 37 0 8 752 222 116 0 0 chr3 21962272 21962315 -137637468 + (T)n Simple_repeat Simple_repeat 1 43 0 8 752 1010 82 0 7 chr3 21962315 21962462 -137637321 - B1_Mus1 SINE Alu 0 148 3 8 752 27 73 0 0 chr3 21962486 21962541 -137637242 + AT_rich Low_complexity Low_complexity 1 55 0 8 752 240 194 83 0 chr3 21962658 21962730 -137637053 + L1M2 LINE L1 2745 2822 -3321 8 752 872 263 76 12 chr3 21962743 21962994 -137636789 - ORR1E LTR MaLR -87 292 1 8 752 460 326 131 34 chr3 21963396 21963717 -137636066 + MLT1A0 LTR MaLR 1 352 -13 8 752 584 308 36 50 chr3 21963757 21963976 -137635807 - B3A SINE B2 0 216 1 8 752 281 281 11 43 chr3 21964144 21964237 -137635546 - ID_B1 SINE B4 -2 222 133 8 752 218 299 156 0 chr3 21964312 21964389 -137635394 + RSINE1 SINE B4 1 89 -76 8 752 324 213 16 0 chr3 21964657 21964718 -137635065 - B1_Mur4 SINE Alu -88 62 1 8 752 314 296 53 4 chr3 21964854 21964960 -137634823 - B1F1 SINE Alu -9 108 1 8 752 312 295 27 21 chr3 21965304 21965466 -137634317 - ID_B1 SINE B4 -30 194 2 8 752 183 156 0 0 chr3 21965481 21965513 -137634270 + T-rich Low_complexity Low_complexity 1 32 0 8 752 275 337 42 0 chr3 21965740 21965835 -137633948 + MLT1A LTR MaLR 242 340 -34 8 752 220 267 171 38 chr3 21966005 21966110 -137633673 + PB1D9 SINE Alu 1 119 -1 8 752 489 286 16 16 chr3 21966121 21966249 -137633534 + ID_B1 SINE B4 81 208 -16 8 752 260 70 0 23 chr3 21966254 21966298 -137633485 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 8 752 289 333 0 0 chr3 21966444 21966519 -137633264 - RSINE1 SINE B4 0 165 91 8 752 207 286 153 22 chr3 21966552 21966781 -137633002 + L2a LINE L2 2329 2587 -832 8 752 316 287 70 0 chr3 21966811 21966926 -137632857 + B1F SINE Alu 14 136 -13 8 752 285 299 105 33 chr3 21967571 21967723 -137632060 - RSINE1 SINE B4 0 165 3 8 752 229 152 87 0 chr3 21967752 21967798 -137631985 - B4 SINE B4 -242 50 1 8 752 1280 151 46 19 chr3 21967918 21968181 -137631602 + ORR1A4 LTR MaLR 1 270 -59 8 752 2807 34 0 0 chr3 21968183 21968507 -137631276 + L1Md_F2 LINE L1 5263 5586 -297 8 752 8354 41 2 2 chr3 21968508 21969502 -137630281 + L1Md_F2 LINE L1 5588 6581 -1 8 752 260 235 14 14 chr3 21969502 21969571 -137630212 + ORR1A4 LTR MaLR 261 329 0 8 752 251 301 43 17 chr3 21969588 21969703 -137630080 - ID_B1 SINE B4 0 224 107 8 752 230 272 173 10 chr3 21969828 21969932 -137629851 + L2a LINE L2 3302 3422 -4 8 752 458 195 145 34 chr3 21970248 21970365 -137629418 - B1_Mur3 SINE Alu 0 149 20 8 752 481 213 18 18 chr3 21970372 21970482 -137629301 - B1F SINE Alu -6 143 34 8 752 262 237 0 33 chr3 21970574 21970635 -137629148 - RLTR28 LTR ERVL -20 504 446 8 752 486 133 0 0 chr3 21971303 21971393 -137628390 + (GA)n Simple_repeat Simple_repeat 1 90 0 8 752 541 315 67 0 chr3 21971495 21971673 -137628110 - ID_B1 SINE B4 -22 202 13 8 752 522 270 0 0 chr3 21971934 21972045 -137627738 + B3A SINE B2 5 115 -83 8 752 414 0 0 0 chr3 21972045 21972091 -137627692 + (CA)n Simple_repeat Simple_repeat 2 47 0 8 752 2222 176 105 30 chr3 21972094 21972620 -137627163 + RMER15 LTR ERVL 2 566 -9 8 752 360 0 0 0 chr3 21972623 21972663 -137627120 + (CA)n Simple_repeat Simple_repeat 2 41 0 8 752 315 0 0 0 chr3 21972750 21972785 -137626998 + (TG)n Simple_repeat Simple_repeat 2 36 0 8 752 300 239 127 122 chr3 21972819 21973000 -137626783 - B4 SINE B4 0 292 111 8 752 396 228 89 0 chr3 21972912 21973013 -137626770 - B1_Mur1 SINE Alu -27 122 13 8 752 212 270 112 0 chr3 21973134 21973223 -137626560 + PB1 SINE Alu 29 127 0 8 752 396 256 11 74 chr3 21975117 21975436 -137624347 + C-rich Low_complexity Low_complexity 1 299 0 8 752 281 165 21 32 chr3 21975468 21975562 -137624221 + C-rich Low_complexity Low_complexity 3 95 0 8 752 21 36 0 0 chr3 21975880 21975908 -137623875 + GC_rich Low_complexity Low_complexity 1 28 0 8 752 228 183 16 16 chr3 21976158 21976219 -137623564 + G-rich Low_complexity Low_complexity 4 64 0 9 752 234 0 0 0 chr3 21976447 21976473 -137623310 + (T)n Simple_repeat Simple_repeat 1 26 0 9 752 387 238 12 0 chr3 21977683 21977763 -137622020 - ID4 SINE ID 0 83 3 9 752 573 15 0 0 chr3 21979249 21979315 -137620468 + (TTC)n Simple_repeat Simple_repeat 2 67 0 9 752 237 182 0 0 chr3 21979432 21979487 -137620296 + CT-rich Low_complexity Low_complexity 3 57 0 9 752 673 188 13 98 chr3 21981720 21981873 -137617910 - B1_Mur4 SINE Alu -10 140 1 9 752 217 216 49 98 chr3 21982518 21982600 -137617183 - PB1D9 SINE Alu -8 112 35 9 752 244 315 36 9 chr3 21983250 21983362 -137616421 - PB1D10 SINE Alu 0 117 3 9 752 373 242 21 42 chr3 21983423 21983518 -137616265 - ID_B1 SINE B4 -54 170 78 9 752 218 288 97 35 chr3 21984003 21984147 -137615636 - RSINE1 SINE B4 -10 155 3 9 752 301 283 36 45 chr3 21984384 21984495 -137615288 - RSINE1 SINE B4 0 165 56 9 752 22 0 0 0 chr3 21984517 21984539 -137615244 + AT_rich Low_complexity Low_complexity 1 22 0 9 752 22 0 0 0 chr3 21984698 21984720 -137615063 + AT_rich Low_complexity Low_complexity 1 22 0 9 752 387 239 104 17 chr3 21984720 21984835 -137614948 - RSINE1 SINE B4 -38 127 3 9 752 452 163 29 48 chr3 21984874 21984977 -137614806 + PB1D9 SINE Alu 20 120 0 9 752 315 312 31 10 chr3 21985035 21985132 -137614651 + B1F SINE Alu 1 99 -50 9 752 649 234 28 14 chr3 21985274 21985417 -137614366 - B1_Mur1 SINE Alu 0 149 5 9 752 1350 120 0 5 chr3 21985494 21985687 -137614096 - B2_Mm2 SINE B2 -2 193 2 9 752 332 152 17 0 chr3 21985955 21986014 -137613769 - B3A SINE B2 -95 103 44 9 752 645 31 31 0 chr3 21986110 21986206 -137613577 + (TTTTG)n Simple_repeat Simple_repeat 2 100 0 9 752 732 41 0 0 chr3 21986206 21986303 -137613480 - B1_Mus2 SINE Alu -10 137 41 9 752 216 0 0 0 chr3 21986315 21986339 -137613444 + (T)n Simple_repeat Simple_repeat 1 24 0 9 752 249 219 54 14 chr3 21986357 21986431 -137613352 - ID_B1 SINE B4 -5 219 143 9 752 504 117 0 0 chr3 21986565 21986642 -137613141 + (TTTC)n Simple_repeat Simple_repeat 3 79 0 9 752 645 80 0 0 chr3 21986642 21986730 -137613053 + (TCC)n Simple_repeat Simple_repeat 3 90 0 9 752 224 220 0 0 chr3 21986995 21987045 -137612738 + CT-rich Low_complexity Low_complexity 2 51 0 9 752 2433 268 93 44 chr3 21987064 21987927 -137611856 - Lx8 LINE L1 -153 7320 6416 9 752 305 294 22 0 chr3 21988140 21988232 -137611551 - PB1D10 SINE Alu -23 94 1 9 752 373 284 37 15 chr3 21989810 21989946 -137609837 + RSINE1 SINE B4 20 158 -7 9 752 349 282 8 46 chr3 21990378 21990508 -137609275 - B1F2 SINE Alu 0 149 25 9 752 1115 146 333 0 chr3 21990715 21991003 -137608780 - RLTR23 LTR ERV1 0 430 47 9 752 905 117 52 0 chr3 21991002 21991156 -137608627 - B2_Mm1a SINE B2 -31 162 1 9 752 342 100 0 0 chr3 21991156 21991206 -137608577 - RLTR23 LTR ERV1 -370 60 11 9 752 412 232 10 29 chr3 21991409 21991511 -137608272 + B1_Mur2 SINE Alu 43 142 -7 9 752 337 331 108 0 chr3 21991528 21991658 -137608125 + ID_B1 SINE B4 80 223 -1 9 752 1187 112 5 41 chr3 21992319 21992514 -137607269 + B2_Mm2 SINE B2 1 188 -7 9 752 701 90 26 18 chr3 21993434 21993547 -137606236 + B1_Mur4 SINE Alu 24 137 -13 9 752 502 250 137 0 chr3 21993588 21993756 -137606027 - B3A SINE B2 -6 192 2 9 752 221 256 82 68 chr3 21993872 21994019 -137605764 - B1F SINE Alu 0 149 1 9 752 1091 43 65 30 chr3 21994463 21994631 -137605152 + B2_Mm2 SINE B2 13 186 -9 9 752 512 190 134 47 chr3 21996056 21996147 -137603636 - B1_Mur2 SINE Alu -1 148 41 9 752 2131 112 18 15 chr3 21996147 21996473 -137603310 - ORR1A2 LTR MaLR 0 327 1 9 752 512 190 134 47 chr3 21996473 21996508 -137603275 - B1_Mur2 SINE Alu -109 40 11 9 752 261 0 0 0 chr3 21997137 21997166 -137602617 + (TTG)n Simple_repeat Simple_repeat 3 31 0 9 752 294 29 0 0 chr3 21997166 21997201 -137602582 + (TGG)n Simple_repeat Simple_repeat 1 35 0 9 752 1078 278 132 38 chr3 21997888 21998576 -137601207 - L1MC1 LINE L1 -220 6113 5361 9 752 690 254 114 43 chr3 21998665 21998875 -137600908 - B4A SINE B4 -67 225 1 9 752 472 265 140 20 chr3 21998957 21999250 -137600533 - L1MC1 LINE L1 -868 5278 4951 9 752 422 172 10 0 chr3 21999281 21999380 -137600403 + C-rich Low_complexity Low_complexity 3 102 0 9 752 402 241 0 0 chr3 21999449 21999528 -137600255 - B3 SINE B2 -121 95 17 9 752 627 249 131 35 chr3 21999624 21999907 -137599876 - L1MC1 LINE L1 -1347 4799 4490 9 752 247 319 17 58 chr3 22000351 22000471 -137599312 + PB1D10 SINE Alu 1 115 -2 1 752 315 49 0 0 chr3 22000471 22000512 -137599271 + (CA)n Simple_repeat Simple_repeat 2 42 0 2 752 1559 12 92 0 chr3 22000528 22000701 -137599082 - B2_Mm1a SINE B2 -3 190 2 3 752 974 177 0 0 chr3 22001508 22001655 -137598128 - B1_Mur4 SINE Alu -2 148 2 4 752 239 268 0 101 chr3 22002097 22002176 -137597607 + RMER12 LTR ERVK 743 813 -509 5 752 31 0 0 24 chr3 22002255 22002280 -137597503 + AT_rich Low_complexity Low_complexity 1 25 0 6 752 1286 48 0 0 chr3 22002280 22002427 -137597356 - B1_Mus2 SINE Alu 0 147 1 7 752 31 0 0 24 chr3 22002427 22002443 -137597340 + AT_rich Low_complexity Low_complexity 1 16 0 8 752 22 35 0 0 chr3 22002630 22002659 -137597124 + AT_rich Low_complexity Low_complexity 1 29 0 9 752 189 0 0 0 chr3 22002729 22002750 -137597033 + (A)n Simple_repeat Simple_repeat 1 21 0 1 752 297 310 50 10 chr3 22003219 22003320 -137596463 - Kanga1b DNA Tc2 -365 414 310 1 752 403 222 208 38 chr3 22003508 22003667 -137596116 + MTD LTR MaLR 221 406 -13 1 752 754 239 27 77 chr3 22004003 22004225 -137595558 - ID_B1 SINE B4 -12 212 2 1 752 241 300 55 0 chr3 22004665 22004752 -137595031 - PB1D10 SINE Alu -47 102 9 1 752 308 298 17 119 chr3 22005294 22005412 -137594371 - RMER12 LTR ERVK -471 851 746 1 752 239 194 92 46 chr3 22005382 22005447 -137594336 - ID4_ SINE ID -7 76 9 1 752 245 306 71 0 chr3 22005529 22005627 -137594156 - PB1D10 SINE Alu -8 109 5 1 752 429 333 104 47 chr3 22005727 22006182 -137593601 - L1MEc LINE L1 -3485 2834 2342 1 752 250 182 248 20 chr3 22006328 22006429 -137593354 - L1MEc LINE L1 -4581 1819 1696 1 752 2068 200 30 2 chr3 22006432 22006838 -137592945 + MTC LTR MaLR 3 419 -2 1 752 1065 289 117 45 chr3 22007311 22007784 -137591999 - L1MA5 LINE L1 -379 6623 6011 2 752 335 23 0 22 chr3 22007784 22007829 -137591954 + (TAA)n Simple_repeat Simple_repeat 3 46 0 2 752 828 265 25 10 chr3 22007829 22008031 -137591752 - B3 SINE B2 -11 205 1 2 752 1388 290 135 72 chr3 22008031 22008651 -137591132 - L1MA5 LINE L1 -572 6010 5398 2 752 1043 195 58 0 chr3 22008651 22008841 -137590942 - B3 SINE B2 -15 201 1 2 752 1388 289 132 73 chr3 22008841 22008855 -137590928 - L1MA5 LINE L1 -1418 5427 5415 2 752 491 240 45 30 chr3 22008855 22008988 -137590795 - B1F1 SINE Alu -14 135 1 2 752 1388 289 132 73 chr3 22008988 22010073 -137589710 - L1MA5 LINE L1 -1431 5414 4200 2 752 1003 234 40 36 chr3 22010073 22010348 -137589435 - MT2B LTR ERVL 0 601 326 2 752 333 0 0 0 chr3 22010360 22010397 -137589386 + (CA)n Simple_repeat Simple_repeat 1 37 0 2 752 329 309 100 42 chr3 22010987 22011418 -137588365 - L1MA5 LINE L1 -4253 2596 2136 2 752 22 0 0 0 chr3 22011576 22011598 -137588185 + AT_rich Low_complexity Low_complexity 1 22 0 2 752 230 179 149 0 chr3 22011754 22011821 -137587962 - L1MA5 LINE L1 -5135 1714 1638 2 752 209 194 0 0 chr3 22012076 22012112 -137587671 + T-rich Low_complexity Low_complexity 3 38 0 2 752 386 337 0 37 chr3 22012129 22012237 -137587546 + PB1D10 SINE Alu 2 105 -12 2 752 3377 36 15 44 chr3 22013207 22013615 -137586168 + MTA_Mm LTR MaLR 1 396 0 3 752 30 27 0 0 chr3 22014158 22014195 -137585588 + AT_rich Low_complexity Low_complexity 1 37 0 3 752 315 0 0 0 chr3 22014469 22014504 -137585279 + (TG)n Simple_repeat Simple_repeat 2 36 0 3 752 21 57 0 0 chr3 22015879 22015914 -137583869 + AT_rich Low_complexity Low_complexity 1 35 0 3 752 3455 151 90 19 chr3 22016631 22017319 -137582464 - RMER6A LTR ERVK 0 756 20 3 752 565 292 124 5 chr3 22017498 22017691 -137582092 - ID_B1 SINE B4 -8 216 1 3 752 473 209 47 134 chr3 22017875 22018024 -137581759 - B1_Mur1 SINE Alu -13 136 1 3 752 778 261 56 47 chr3 22018237 22018450 -137581333 + B3 SINE B2 2 216 0 3 752 315 197 49 0 chr3 22018560 22018621 -137581162 + B3A SINE B2 104 167 -31 3 752 710 237 72 0 chr3 22019140 22019292 -137580491 + RSINE1 SINE B4 3 165 0 3 752 296 229 78 87 chr3 22019693 22019808 -137579975 - PB1D9 SINE Alu -3 117 4 4 752 207 339 16 0 chr3 22019836 22019898 -137579885 + (TG)n Simple_repeat Simple_repeat 1 63 0 4 752 460 278 8 16 chr3 22019937 22020065 -137579718 - B1_Mur2 SINE Alu 0 149 23 4 753 2537 108 14 39 chr3 22020607 22021020 -137578763 - RLTR9D LTR ERVK 0 403 1 4 753 581 218 226 17 chr3 22023915 22024092 -137575691 + B3 SINE B2 2 215 -1 4 753 492 294 29 7 chr3 22024262 22024399 -137575384 - B1_Mur1 SINE Alu -7 142 3 4 753 236 287 33 33 chr3 22024821 22024911 -137574872 - L1M4 LINE L1 -1015 5131 5042 4 753 232 307 67 0 chr3 22025013 22025088 -137574695 - B1F SINE Alu -65 84 5 4 753 283 239 41 114 chr3 22025690 22025813 -137573970 - B4 SINE B4 -163 129 16 4 753 222 309 44 0 chr3 22026119 22026187 -137573596 - ID2 SINE ID -2 81 11 4 753 400 287 40 47 chr3 22026448 22026598 -137573185 + B1F1 SINE Alu 1 149 0 5 753 2047 134 65 9 chr3 22026778 22027118 -137572665 - ORR1B2 LTR MaLR -8 359 1 5 753 1633 170 79 9 chr3 22028250 22028565 -137571218 + ORR1B2 LTR MaLR 1 337 -30 5 753 214 304 0 42 chr3 22028979 22029051 -137570732 + CT-rich Low_complexity Low_complexity 1 69 0 5 753 219 125 0 0 chr3 22030410 22030450 -137569333 + (CACAG)n Simple_repeat Simple_repeat 3 42 0 5 753 881 232 94 105 chr3 22030600 22030622 -137569161 - MT2B LTR ERVL -2 599 583 5 753 729 171 290 6 chr3 22030622 22030798 -137568985 - URR1A DNA MER1_type 0 226 1 5 753 881 232 94 105 chr3 22030798 22030826 -137568957 - MT2B LTR ERVL -19 582 560 5 753 249 33 0 0 chr3 22030826 22030856 -137568927 + (TATG)n Simple_repeat Simple_repeat 4 33 0 5 753 881 253 95 94 chr3 22030856 22031286 -137568497 - MT2B LTR ERVL -42 559 36 5 753 371 322 33 7 chr3 22031412 22031562 -137568221 - ORR1D2 LTR MaLR -6 364 211 5 753 219 154 0 0 chr3 22031593 22031632 -137568151 + (TG)n Simple_repeat Simple_repeat 1 39 0 5 753 387 0 0 0 chr3 22031687 22031730 -137568053 + (CA)n Simple_repeat Simple_repeat 1 43 0 6 753 2022 222 18 20 chr3 22031730 22032175 -137567608 - RLTR20B1 LTR ERVK -119 444 1 6 753 267 336 16 16 chr3 22032329 22032453 -137567330 + B1F SINE Alu 10 133 -16 6 753 297 0 0 0 chr3 22032457 22032490 -137567293 + (CAGC)n Simple_repeat Simple_repeat 2 34 0 6 753 309 330 22 0 chr3 22033050 22033141 -137566642 - PB1D10 SINE Alu -22 95 3 6 753 6774 115 32 16 chr3 22033196 22034382 -137565401 - Lx LINE L1 0 6654 5437 6 753 25 0 0 0 chr3 22035036 22035061 -137564722 + AT_rich Low_complexity Low_complexity 1 25 0 6 753 562 256 16 0 chr3 22035272 22035393 -137564390 - B3 SINE B2 -5 211 89 6 753 279 0 0 0 chr3 22035393 22035424 -137564359 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 6 753 1158 86 0 0 chr3 22035424 22035564 -137564219 - B1_Mus1 SINE Alu -8 140 1 6 753 225 0 0 0 chr3 22035564 22035589 -137564194 + (T)n Simple_repeat Simple_repeat 1 25 0 7 753 1455 89 16 5 chr3 22035611 22035802 -137563981 - B2_Mm2 SINE B2 -1 194 2 7 753 266 189 19 0 chr3 22035833 22035886 -137563897 - B3A SINE B2 -144 54 1 6 753 25 31 0 0 chr3 22036014 22036046 -137563737 + AT_rich Low_complexity Low_complexity 1 32 0 7 753 738 200 24 18 chr3 22037979 22038147 -137561636 - RMER5 LTR ERV1 -16 518 350 7 753 360 0 0 0 chr3 22038761 22038801 -137560982 + (TG)n Simple_repeat Simple_repeat 2 41 0 7 753 340 245 147 39 chr3 22038803 22038905 -137560878 - RSINE1 SINE B4 -41 124 12 7 753 739 182 21 0 chr3 22041114 22041257 -137558526 - URR1A DNA MER1_type 0 226 81 7 753 343 212 112 0 chr3 22041911 22041991 -137557792 - PB1D10 SINE Alu 0 117 29 7 753 423 38 0 0 chr3 22042421 22042474 -137557309 + (TG)n Simple_repeat Simple_repeat 2 54 0 7 753 21 36 0 0 chr3 22043106 22043134 -137556649 + AT_rich Low_complexity Low_complexity 1 28 0 7 753 207 209 0 0 chr3 22043976 22044019 -137555764 + T-rich Low_complexity Low_complexity 1 43 0 8 753 744 62 0 0 chr3 22044172 22044268 -137555515 - B1_Mm SINE Alu -13 134 39 8 753 301 232 9 124 chr3 22044199 22044312 -137555471 - RLTR25B LTR ERVK -521 507 408 8 753 401 37 19 0 chr3 22045028 22045082 -137554701 - B1_Mm SINE Alu -1 146 92 8 753 283 211 0 53 chr3 22045167 22045242 -137554541 - B1_Mus2 SINE Alu -34 113 43 8 753 301 224 83 110 chr3 22045228 22045376 -137554407 + B3A SINE B2 67 213 -3 8 753 2224 272 105 47 chr3 22045936 22046758 -137553025 - Lx6 LINE L1 -47 7413 6545 8 753 2915 183 79 13 chr3 22046766 22047374 -137552409 + L1_Mur3 LINE L1 4484 5131 -749 8 753 1623 208 28 28 chr3 22048117 22048473 -137551310 - ORR1D1 LTR MaLR -8 366 11 8 753 410 222 18 18 chr3 22049080 22049190 -137550593 - PB1D9 SINE Alu 0 120 11 8 753 341 317 10 0 chr3 22049227 22049328 -137550455 - Lx8 LINE L1 -176 7297 7196 9 753 355 324 69 69 chr3 22049399 22049610 -137550173 + Tigger7 DNA MER2_type 1 242 -2249 9 753 433 275 70 81 chr3 22050383 22050429 -137549354 - B4 SINE B4 -18 274 91 9 753 633 201 29 43 chr3 22050429 22050569 -137549214 - B1_Mur1 SINE Alu -6 143 6 9 753 342 290 84 0 chr3 22050954 22051061 -137548722 - L1MC5 LINE L1 -524 7437 7322 9 753 948 39 54 8 chr3 22051528 22051657 -137548126 - B1_Mus1 SINE Alu -6 142 8 9 753 891 83 58 0 chr3 22051656 22051776 -137548007 + B1_Mus2 SINE Alu 12 138 -9 9 753 208 0 62 0 chr3 22051776 22051808 -137547975 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 9 753 420 20 0 0 chr3 22052355 22052404 -137547379 + (TATG)n Simple_repeat Simple_repeat 3 51 0 9 753 293 221 88 0 chr3 22052404 22052472 -137547311 - PB1D10 SINE Alu -33 84 11 9 753 356 239 45 0 chr3 22052982 22053070 -137546713 + B3 SINE B2 123 214 -2 1 753 862 266 181 6 chr3 22053763 22054232 -137545551 - L1_Mur3 LINE L1 -1700 4147 3592 1 753 307 0 0 44 chr3 22054644 22054689 -137545094 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 1 753 2453 71 0 27 chr3 22054789 22055121 -137544662 - MTA_Mm LTR MaLR -2 394 72 1 753 2323 80 80 29 chr3 22055251 22055625 -137544158 - RLTR9E LTR ERVK -16 393 1 1 753 374 316 114 37 chr3 22055636 22056119 -137543664 - L1M2 LINE L1 -3119 3024 2505 1 753 9981 183 88 57 chr3 22056151 22057051 -137542732 - L1_Mur3 LINE L1 -1880 4000 3056 1 753 246 32 0 0 chr3 22057051 22057082 -137542701 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1 753 9981 183 88 57 chr3 22057082 22058106 -137541677 - L1_Mur3 LINE L1 -2825 3055 2023 1 753 273 57 0 0 chr3 22058106 22058141 -137541642 + (TTCA)n Simple_repeat Simple_repeat 4 38 0 1 753 1210 50 0 7 chr3 22058143 22058285 -137541498 - B1_Mus2 SINE Alu -6 141 1 1 753 9981 183 88 57 chr3 22058285 22058840 -137540943 - L1_Mur3 LINE L1 -3858 2022 1427 1 753 1168 95 0 0 chr3 22058840 22058987 -137540796 - B1_Mus1 SINE Alu 0 148 2 1 753 9981 214 102 26 chr3 22058987 22059482 -137540301 - L1_Mur3 LINE L1 -4454 1426 889 1 753 21 0 0 0 chr3 22060186 22060207 -137539576 + AT_rich Low_complexity Low_complexity 1 21 0 1 753 1019 101 0 12 chr3 22060345 22060505 -137539278 + (TCCC)n Simple_repeat Simple_repeat 4 161 0 1 753 347 267 59 0 chr3 22061556 22061657 -137538126 - PB1 SINE Alu -8 119 13 1 753 623 336 51 20 chr3 22063101 22063356 -137536427 + B4A SINE B4 4 266 -26 1 753 315 0 0 0 chr3 22063373 22063408 -137536375 + (CA)n Simple_repeat Simple_repeat 1 35 0 1 753 1480 155 14 153 chr3 22063913 22064278 -137535505 - ORR1A4 LTR MaLR -8 321 8 1 753 281 216 145 26 chr3 22064610 22064686 -137535097 + RSINE1 SINE B4 80 164 -1 1 753 643 165 0 25 chr3 22066209 22066327 -137533456 - B1_Mur2 SINE Alu -1 148 34 1 753 647 126 0 93 chr3 22066599 22066739 -137533044 - BC1_Mm scRNA scRNA -25 127 1 1 753 270 215 44 44 chr3 22067284 22067352 -137532431 - MLT2B2 LTR ERVL -80 482 415 1 753 935 163 212 0 chr3 22068083 22068267 -137531516 + URR1B DNA MER1_type 3 225 0 1 753 226 239 22 0 chr3 22068846 22068892 -137530891 - ID SINE ID -141 83 37 1 753 1488 192 87 77 chr3 22069268 22069646 -137530137 - RMER10B LTR ERVL -11 387 6 1 753 251 265 60 0 chr3 22069651 22069734 -137530049 + MLT1A0 LTR MaLR 10 97 -268 1 753 225 219 0 0 chr3 22069738 22069779 -137530004 - Lx8 LINE L1 -1321 6152 6112 1 753 1413 180 96 28 chr3 22071772 22072126 -137527657 - RMER17C LTR ERVK -32 378 1 1 753 228 67 0 0 chr3 22072215 22072245 -137527538 + (CTAAT)n Simple_repeat Simple_repeat 4 33 0 1 753 435 217 245 0 chr3 22072250 22072356 -137527427 - B1_Mm SINE Alu -14 133 2 1 753 681 279 130 10 chr3 22072367 22072559 -137527224 - B3 SINE B2 -1 215 1 1 753 189 0 0 0 chr3 22073094 22073115 -137526668 + (TTG)n Simple_repeat Simple_repeat 2 22 0 1 753 529 244 98 13 chr3 22073173 22073397 -137526386 - Charlie1a DNA MER1_type -135 1320 1078 1 753 305 300 11 43 chr3 22073736 22073830 -137525953 - B1_Mur2 SINE Alu -57 92 2 1 753 761 118 0 8 chr3 22073892 22074012 -137525771 + B2_Mm2 SINE B2 72 190 -5 1 753 317 313 100 46 chr3 22074030 22074271 -137525512 - Charlie1a DNA MER1_type -696 759 506 1 753 204 40 0 0 chr3 22074876 22074901 -137524882 + (TTTTTG)n Simple_repeat Simple_repeat 2 26 0 1 753 423 270 18 9 chr3 22075613 22075725 -137524058 + PB1D9 SINE Alu 2 114 -6 1 753 194 0 0 37 chr3 22076354 22076381 -137523402 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 1 753 367 301 82 62 chr3 22076393 22076588 -137523195 - MLT1B LTR MaLR -7 383 185 1 753 372 250 135 0 chr3 22077380 22077528 -137522255 + MER58B DNA MER1_type 173 340 -1 1 753 23 0 0 0 chr3 22078645 22078668 -137521115 + AT_rich Low_complexity Low_complexity 1 23 0 1 753 299 232 71 24 chr3 22079720 22079804 -137519979 + ID_B1 SINE B4 137 224 0 1 753 372 259 66 41 chr3 22080241 22080362 -137519421 + RSINE1 SINE B4 4 127 -38 1 753 234 91 0 0 chr3 22080646 22080679 -137519104 + (TATG)n Simple_repeat Simple_repeat 4 36 0 1 753 510 202 40 10 chr3 22081496 22081596 -137518187 + PB1D9 SINE Alu 1 103 -17 1 753 1110 83 0 46 chr3 22083881 22084033 -137515750 - B1_Mus2 SINE Alu -1 146 2 1 753 21 71 0 0 chr3 22085258 22085300 -137514483 + AT_rich Low_complexity Low_complexity 1 42 0 1 753 28 61 0 0 chr3 22086206 22086255 -137513528 + AT_rich Low_complexity Low_complexity 1 49 0 1 753 849 209 0 13 chr3 22086370 22086520 -137513263 + B1_Mur4 SINE Alu 1 148 -2 1 753 432 290 107 14 chr3 22086623 22086763 -137513020 - ID_B1 SINE B4 -3 221 69 1 753 396 59 0 0 chr3 22087594 22087645 -137512138 + (TG)n Simple_repeat Simple_repeat 2 52 0 1 753 3199 50 40 5 chr3 22089022 22089402 -137510381 - MTA_Mm LTR MaLR -3 393 1 1 753 201 265 175 25 chr3 22092293 22092413 -137507370 + MIRc SINE MIR 12 149 -119 1 753 299 258 100 30 chr3 22092687 22092787 -137506996 - PB1 SINE Alu -20 107 1 1 753 273 286 103 24 chr3 22093939 22094104 -137505679 - L1MD LINE L1 -654 5588 5411 1 753 798 318 74 48 chr3 22094133 22094404 -137505379 - B4A SINE B4 -7 285 8 1 753 1045 226 55 29 chr3 22094692 22095038 -137504745 - RLTR31_Mur LTR ERVK -160 393 39 1 753 1637 200 93 14 chr3 22095105 22095460 -137504323 - ORR1C2 LTR MaLR -1 383 1 1 753 2138 100 23 0 chr3 22096116 22096426 -137503357 + ORR1A2 LTR MaLR 3 319 -8 1 753 21 0 0 0 chr3 22096469 22096490 -137503293 + AT_rich Low_complexity Low_complexity 1 21 0 1 753 3491 188 87 48 chr3 22096497 22097255 -137502528 - Lx5 LINE L1 0 7050 6263 1 753 40 59 0 0 chr3 22097479 22097547 -137502236 + AT_rich Low_complexity Low_complexity 1 68 0 1 753 650 235 17 60 chr3 22098930 22099089 -137500694 + B3 SINE B2 1 157 -38 1 753 342 0 0 0 chr3 22099089 22099127 -137500656 + (TGAA)n Simple_repeat Simple_repeat 3 40 0 1 753 426 268 58 85 chr3 22099127 22099155 -137500628 + B2_Mm2 SINE B2 158 182 -13 1 753 435 233 8 65 chr3 22099648 22099772 -137500011 - B1_Mur2 SINE Alu 0 149 33 1 753 271 275 107 3 chr3 22099990 22100072 -137499711 - MLT2B1 LTR ERVL -59 503 411 1 753 620 289 204 3 chr3 22100072 22100186 -137499597 - ORR1D1 LTR MaLR 0 359 233 1 753 248 0 0 30 chr3 22100186 22100219 -137499564 + (CAGG)n Simple_repeat Simple_repeat 4 35 0 1 753 740 219 119 16 chr3 22100219 22100403 -137499380 - ORR1D1 LTR MaLR -127 232 1 1 753 286 224 117 36 chr3 22100993 22101104 -137498679 - PB1D7 SINE Alu 0 120 1 1 753 180 0 0 0 chr3 22101692 22101712 -137498071 + (CCTA)n Simple_repeat Simple_repeat 1 20 0 1 753 318 26 0 0 chr3 22101845 22101884 -137497899 + (TTA)n Simple_repeat Simple_repeat 1 39 0 1 753 26 0 0 0 chr3 22102491 22102517 -137497266 + AT_rich Low_complexity Low_complexity 1 26 0 1 753 983 124 0 21 chr3 22103804 22103944 -137495839 - B1_Mus2 SINE Alu -10 137 1 1 753 322 251 206 30 chr3 22104143 22104621 -137495162 - L1MA4 LINE L1 -374 5926 5353 1 753 387 328 26 9 chr3 22108272 22108386 -137491397 - Lx8 LINE L1 -206 7267 7152 1 753 198 0 0 0 chr3 22110115 22110137 -137489646 + (TG)n Simple_repeat Simple_repeat 1 22 0 1 753 31 0 0 0 chr3 22110370 22110401 -137489382 + AT_rich Low_complexity Low_complexity 1 31 0 1 753 1232 54 0 20 chr3 22110863 22111013 -137488770 - B1_Mm SINE Alu 0 147 1 1 753 21 36 0 0 chr3 22111159 22111187 -137488596 + AT_rich Low_complexity Low_complexity 1 28 0 1 753 30 0 0 0 chr3 22111663 22111693 -137488090 + AT_rich Low_complexity Low_complexity 1 30 0 1 753 201 94 0 0 chr3 22111988 22112020 -137487763 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 1 753 315 0 0 0 chr3 22114082 22114117 -137485666 + (TG)n Simple_repeat Simple_repeat 2 36 0 1 753 23 0 0 0 chr3 22115471 22115494 -137484289 + AT_rich Low_complexity Low_complexity 1 23 0 1 753 377 179 196 9 chr3 22115971 22116078 -137483705 + ID_B1 SINE B4 86 212 -12 1 753 231 275 105 29 chr3 22116619 22116724 -137483059 + MIR SINE MIR 114 226 -36 1 753 186 133 0 0 chr3 22116880 22116910 -137482873 + (TCTCCC)n Simple_repeat Simple_repeat 2 31 0 1 753 279 93 0 0 chr3 22116928 22116971 -137482812 + (GA)n Simple_repeat Simple_repeat 2 44 0 1 753 1194 187 106 40 chr3 22116971 22117331 -137482452 - MT2B LTR ERVL -65 536 1 1 753 210 297 12 119 chr3 22117387 22117471 -137482312 - PB1D10 SINE Alu -42 75 1 1 753 219 289 12 116 chr3 22117402 22117488 -137482295 - B4A SINE B4 -147 145 69 1 753 1730 137 40 28 chr3 22118162 22118484 -137481299 + ORR1A3 LTR MaLR 1 326 0 1 753 1615 194 73 9 chr3 22118839 22119182 -137480601 - ORR1D1 LTR MaLR -7 367 3 1 753 572 116 0 0 chr3 22119239 22119325 -137480458 - B2_Mm2 SINE B2 -38 157 72 1 753 339 321 38 91 chr3 22119325 22119534 -137480249 + RLTR25A LTR ERVK 1 198 -905 1 753 300 217 90 14 chr3 22119550 22119574 -137480209 + ORR1A3-int LTR MaLR 598 620 -889 1 753 720 35 17 26 chr3 22119574 22119690 -137480093 + L1Md_F3 LINE L1 6470 6584 0 1 753 300 217 90 14 chr3 22119690 22119810 -137479973 + ORR1A3-int LTR MaLR 621 753 -756 1 753 998 61 0 0 chr3 22119717 22119849 -137479934 + B1_Mus1 SINE Alu 15 146 -2 1 753 798 77 39 0 chr3 22119849 22119979 -137479804 + (GAAA)n Simple_repeat Simple_repeat 2 136 0 1 753 226 189 28 42 chr3 22120137 22120209 -137479574 + GA-rich Low_complexity Low_complexity 2 72 0 1 753 594 75 0 0 chr3 22120344 22120424 -137479359 - B2_Mm2 SINE B2 -115 80 1 1 753 474 65 0 0 chr3 22120587 22120649 -137479134 + (A)n Simple_repeat Simple_repeat 1 62 0 1 753 4685 156 58 22 chr3 22121151 22122023 -137477760 - RMER13B LTR ERVK 0 908 5 1 753 1269 191 198 5 chr3 22122883 22123251 -137476532 + ORR1A1-int LTR MaLR 1 439 -1353 2 753 1427 165 66 97 chr3 22123200 22123550 -137476233 - ORR1B1 LTR MaLR -15 379 41 2 753 396 0 0 0 chr3 22123725 22123769 -137476014 + (GA)n Simple_repeat Simple_repeat 2 45 0 2 753 257 293 56 72 chr3 22124017 22124212 -137475571 - L1MD LINE L1 -759 5600 5409 2 753 441 0 0 0 chr3 22124279 22124328 -137475455 + (CA)n Simple_repeat Simple_repeat 1 49 0 2 753 239 202 55 5 chr3 22124737 22124830 -137474953 + PB1D9 SINE Alu 21 119 -1 2 753 1285 79 0 10 chr3 22124835 22125027 -137474756 + B2_Mm2 SINE B2 2 191 -4 2 753 261 83 0 0 chr3 22125256 22125292 -137474491 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 2 753 3089 174 101 11 chr3 22125292 22125905 -137473878 - Lx5 LINE L1 -19 7031 6364 2 753 3630 154 92 49 chr3 22125906 22126762 -137473021 + Lx5 LINE L1 5440 6353 -697 2 753 186 71 0 0 chr3 22126916 22126944 -137472839 + (T)n Simple_repeat Simple_repeat 1 28 0 2 753 647 231 0 0 chr3 22127516 22127646 -137472137 + B1_Mus2 SINE Alu 9 138 -9 2 753 253 333 47 9 chr3 22127778 22127884 -137471899 - RSINE1 SINE B4 -4 161 52 2 753 1469 137 67 136 chr3 22127889 22128268 -137471515 - RLTR19A LTR ERVK 0 496 146 2 753 1812 196 93 28 chr3 22128268 22128772 -137471011 + RLTR31_Mm LTR ERVK 1 537 -24 2 753 554 230 67 105 chr3 22128770 22128979 -137470804 + RLTR31_Mm LTR ERVK 361 561 0 2 753 896 132 26 7 chr3 22128979 22129127 -137470656 - RLTR19A LTR ERVK -345 151 1 2 753 1087 210 92 51 chr3 22129633 22129969 -137469814 - MTEb LTR MaLR -12 367 18 2 753 373 262 12 0 chr3 22130945 22131025 -137468758 - PB1D7 SINE Alu 0 120 40 2 753 603 304 79 31 chr3 22131109 22131401 -137468382 - L1ME3A LINE L1 -182 5991 5686 2 753 350 287 147 46 chr3 22131483 22131569 -137468214 + MER57D LTR ERV1 4 92 -319 2 753 342 0 0 0 chr3 22131569 22131607 -137468176 + (TG)n Simple_repeat Simple_repeat 1 38 0 2 753 350 287 147 46 chr3 22131607 22131717 -137468066 + MER57D LTR ERV1 93 220 -191 2 753 992 312 30 18 chr3 22131738 22132077 -137467706 - ORR1E LTR MaLR -2 357 15 2 753 687 242 16 43 chr3 22132232 22132418 -137467365 + B3 SINE B2 6 186 -30 2 753 441 258 109 43 chr3 22132446 22132746 -137467037 - L1MB2 LINE L1 -79 6092 5772 2 753 611 87 98 0 chr3 22132818 22132910 -137466873 + L1_Mur2 LINE L1 5241 5341 -536 2 753 560 91 0 0 chr3 22132928 22133005 -137466778 - ETnERV2-int LTR ERVK 0 7406 7330 2 753 16451 193 36 22 chr3 22133118 22138631 -137461152 - ETnERV2-int LTR ERVK -1183 6223 2 2 753 2471 111 2 27 chr3 22138639 22139045 -137460738 - RLTR9E LTR ERVK -5 404 9 2 753 351 0 0 0 chr3 22139471 22139510 -137460273 + (CAA)n Simple_repeat Simple_repeat 3 41 0 2 753 39285 47 2 14 chr3 22139726 22146033 -137453750 - L1Md_A LINE L1 0 6582 355 2 753 651 187 0 22 chr3 22146034 22146171 -137453612 + B1_Mur3 SINE Alu 14 147 -2 2 753 284 312 61 22 chr3 22146205 22146385 -137453398 + L1_Mur3 LINE L1 2206 2392 -3488 2 753 399 301 28 34 chr3 22146437 22146616 -137453167 - RMER15 LTR ERVL -53 522 345 2 753 3329 134 54 9 chr3 22147290 22147846 -137451937 - Lx4A LINE L1 -4 7054 6474 2 753 2701 69 0 0 chr3 22147846 22148178 -137451605 - IAPEY3_LTR LTR ERVK 0 332 1 2 753 4996 60 47 0 chr3 22148178 22149074 -137450709 - IAPEY3-int LTR ERVK 0 7680 6743 2 753 3599 79 0 2 chr3 22149064 22149519 -137450264 - IAPEY3-int LTR ERVK -1367 6214 5761 2 753 3452 82 0 16 chr3 22149507 22149956 -137449827 - IAPEY3-int LTR ERVK -1936 5645 5204 2 753 361 103 59 82 chr3 22150212 22150297 -137449486 - IAPEY3-int LTR ERVK -2911 4670 4588 2 753 412 97 0 31 chr3 22150459 22150523 -137449260 - MMVL30-int LTR ERV1 -2354 1344 1283 2 753 1592 174 101 41 chr3 22150512 22150877 -137448906 - RMER16-int LTR ERVK -4769 637 251 2 94 4195 150 29 54 chr3 22150986 22151804 -137447979 - IAPEY3-int LTR ERVK -6629 952 14 2 754 348 260 10 20 chr3 22151804 22151818 -137447965 - L1_Mus3 LINE L1 -493 6145 6132 2 754 2732 72 0 0 chr3 22151818 22152150 -137447633 - IAPEY3_LTR LTR ERVK 0 332 1 2 754 8163 118 28 5 chr3 22152150 22153981 -137445802 - Lx4A LINE L1 -579 6479 4595 2 754 26645 107 89 33 chr3 22153976 22159304 -137440479 - L1_Mus1 LINE L1 -614 5953 307 2 754 3846 156 36 11 chr3 22159287 22160239 -137439544 - Lx4A LINE L1 -4265 1612 633 2 754 2034 239 49 97 chr3 22160239 22160911 -137438872 - RLTR26 LTR ERVK 0 642 3 2 754 483 189 28 0 chr3 22160913 22161019 -137438764 - Lx4A LINE L1 -6448 638 530 2 754 462 246 28 47 chr3 22161105 22161320 -137438463 + MT2A LTR ERVL 3 316 -268 2 754 2226 176 57 50 chr3 22161320 22161896 -137437887 - RMER6C LTR ERVK 0 690 111 2 754 2608 149 17 33 chr3 22161914 22162393 -137437390 - Lx2 LINE L1 0 6997 6527 2 754 1026 115 6 0 chr3 22162837 22162994 -137436789 + RLTR1B LTR ERV1 355 512 0 2 754 5929 176 99 47 chr3 22162994 22164093 -137435690 + RLTR1B-int LTR ERV1 1 1138 -2161 2 754 549 0 0 0 chr3 22164093 22164154 -137435629 + (GA)n Simple_repeat Simple_repeat 1 61 0 2 754 11044 57 63 11 chr3 22164154 22166115 -137433668 + RLTR1B-int LTR ERV1 1139 3299 0 2 754 1185 51 83 14 chr3 22166115 22166455 -137433328 + RLTR1B LTR ERV1 1 410 -102 2 754 488 183 21 0 chr3 22166459 22166552 -137433231 + RLTR1B LTR ERV1 343 437 -75 2 754 180 0 0 0 chr3 22166585 22166605 -137433178 + (CAA)n Simple_repeat Simple_repeat 2 21 0 2 754 209 122 49 0 chr3 22166750 22166791 -137432992 + GA-rich Low_complexity Low_complexity 3 45 0 2 754 442 308 55 0 chr3 22167669 22167815 -137431968 + B3A SINE B2 40 193 -5 2 754 586 0 0 26 chr3 22167959 22168035 -137431748 + (TCTA)n Simple_repeat Simple_repeat 2 75 0 2 754 361 269 39 0 chr3 22168037 22168141 -137431642 - ID_B1 SINE B4 -26 198 91 2 754 416 308 84 0 chr3 22169323 22169466 -137430317 - RSINE1 SINE B4 -6 159 5 2 754 34225 70 2 43 chr3 22169604 22176174 -137423609 - L1Md_F2 LINE L1 -1 6584 199 2 754 413 328 24 19 chr3 22176190 22176395 -137423388 - L1MA8 LINE L1 -141 6150 5945 2 754 220 267 33 16 chr3 22176403 22176464 -137423319 - ID4 SINE ID -11 72 11 2 754 286 211 0 0 chr3 22176465 22176517 -137423266 - L1MA8 LINE L1 -352 5939 5888 2 754 686 241 19 112 chr3 22176532 22176738 -137423045 - B3A SINE B2 -3 195 9 2 754 571 273 81 0 chr3 22176762 22176923 -137422860 - B3A SINE B2 -24 174 1 2 754 2648 157 81 136 chr3 22176944 22177667 -137422116 + RMER19B LTR ERVK 59 902 0 2 754 246 267 215 8 chr3 22177668 22177789 -137421994 - L1MA8 LINE L1 -414 5877 5732 2 754 37509 61 5 2 chr3 22177863 22183999 -137415784 - L1Md_F3 LINE L1 -14 6570 469 2 754 318 228 0 0 chr3 22184162 22184219 -137415564 + B3 SINE B2 15 71 -145 2 754 314 127 18 0 chr3 22184236 22184291 -137415492 + B3 SINE B2 158 213 -3 2 754 664 298 156 8 chr3 22184529 22184881 -137414902 + MER34 LTR ERV1 119 522 -20 2 754 512 218 18 9 chr3 22185111 22185222 -137414561 + Lx7 LINE L1 5633 5744 -1952 2 754 24 53 0 0 chr3 22185275 22185313 -137414470 + AT_rich Low_complexity Low_complexity 1 38 0 2 754 180 77 0 0 chr3 22185313 22185339 -137414444 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 2 754 3489 152 75 22 chr3 22185618 22186205 -137413578 + Lx3C LINE L1 6351 6968 -8 2 754 927 255 25 0 chr3 22186349 22186549 -137413234 - B3 SINE B2 -1 215 11 2 754 304 204 0 18 chr3 22186540 22186595 -137413188 + ORR1A4 LTR MaLR 276 329 0 2 754 551 252 0 80 chr3 22186595 22186660 -137413123 + B4A SINE B4 143 203 -89 2 754 3244 80 2 0 chr3 22186660 22187059 -137412724 + MTB LTR MaLR 1 400 0 2 754 551 252 0 80 chr3 22187059 22187106 -137412677 + B4A SINE B4 204 244 -48 2 754 318 221 51 25 chr3 22187162 22187241 -137412542 - RLTR28B LTR ERVL -10 514 434 2 754 249 57 0 0 chr3 22187271 22187306 -137412477 + (CAT)n Simple_repeat Simple_repeat 1 35 0 2 754 204 40 0 0 chr3 22187325 22187350 -137412433 + (CAAG)n Simple_repeat Simple_repeat 2 26 0 2 754 644 230 231 16 chr3 22187355 22187611 -137412172 - RLTR28B LTR ERVL -152 329 19 2 754 318 225 0 0 chr3 22188184 22188295 -137411488 + GA-rich Low_complexity Low_complexity 1 111 0 2 754 804 135 267 11 chr3 22188441 22188621 -137411162 - URR1A DNA MER1_type 0 226 1 2 754 201 288 41 0 chr3 22189240 22189313 -137410470 + CT-rich Low_complexity Low_complexity 6 81 0 2 754 462 250 9 36 chr3 22189699 22189811 -137409972 - PB1D10 SINE Alu -7 110 2 2 754 371 349 144 41 chr3 22190196 22190516 -137409267 + LTR16C LTR ERVL 137 489 0 2 754 722 294 12 12 chr3 22191389 22191554 -137408229 + ID_B1 SINE B4 7 171 -53 2 754 294 95 0 0 chr3 22191698 22191740 -137408043 + (CA)n Simple_repeat Simple_repeat 2 43 0 2 754 577 48 12 23 chr3 22191814 22191900 -137407883 + (TCTA)n Simple_repeat Simple_repeat 4 88 0 2 754 334 247 39 46 chr3 22192001 22192019 -137407764 + L1M4 LINE L1 5251 5268 -878 2 754 501 106 12 0 chr3 22192019 22192104 -137407679 - Lx LINE L1 -2 6652 6567 2 754 1476 95 5 0 chr3 22192104 22192314 -137407469 + L1_Mm LINE L1 5239 5449 -434 2 754 2429 126 74 28 chr3 22192314 22192705 -137407078 - RLTR9E LTR ERVK 0 409 1 2 754 344 97 145 0 chr3 22192715 22192777 -137407006 - ETnERV2-int LTR ERVK -5 7401 7331 2 754 2492 184 41 98 chr3 22192979 22194299 -137405484 - ETnERV2-int LTR ERVK -1153 4655 2696 2 754 7543 72 0 15 chr3 22194314 22195279 -137404504 + L1Md_F2 LINE L1 5645 6582 0 2 754 5669 144 67 23 chr3 22195280 22196307 -137403476 - ETnERV2-int LTR ERVK -5263 2143 1072 2 754 926 236 107 47 chr3 22196318 22196682 -137403101 - ETnERV2-int LTR ERVK -2927 387 2 2 754 2320 118 88 60 chr3 22196683 22197081 -137402702 - RLTR9E LTR ERVK 0 409 1 2 754 7952 84 3 3 chr3 22197081 22198269 -137401514 + L1_Mus4 LINE L1 5444 6633 -3 2 754 596 342 70 4 chr3 22198280 22198553 -137401230 + MLT1B LTR MaLR 89 379 -11 2 754 393 306 66 0 chr3 22198875 22198996 -137400787 - ID_B1 SINE B4 -5 219 91 2 754 23 0 0 0 chr3 22199002 22199025 -137400758 + AT_rich Low_complexity Low_complexity 1 23 0 2 754 223 205 0 0 chr3 22199050 22199089 -137400694 + B3A SINE B2 2 40 -158 2 754 641 250 15 0 chr3 22199091 22199223 -137400560 + B1F2 SINE Alu 3 136 -13 2 754 360 0 0 0 chr3 22199224 22199264 -137400519 + (TAAAA)n Simple_repeat Simple_repeat 2 41 0 2 754 359 353 109 74 chr3 22199267 22199524 -137400259 + B4A SINE B4 27 292 0 2 754 283 239 0 27 chr3 22199529 22199602 -137400181 + (CATA)n Simple_repeat Simple_repeat 4 74 0 2 754 1339 231 37 118 chr3 22200381 22200789 -137398994 + MTE2a LTR MaLR 5 379 0 2 754 210 235 0 19 chr3 22201544 22201596 -137398187 + CT-rich Low_complexity Low_complexity 3 53 0 2 754 331 341 50 11 chr3 22201652 22201833 -137397950 + Charlie26a DNA MER1_type 30 217 -108 2 754 633 212 64 23 chr3 22202227 22202401 -137397382 + B4 SINE B4 3 211 -81 2 754 609 190 152 53 chr3 22202614 22202861 -137396922 - RMER21B LTR ERV1 -320 627 272 2 754 1748 228 56 3 chr3 22203423 22203797 -137395986 - MTD LTR MaLR -14 405 12 2 754 870 181 279 30 chr3 22204107 22204340 -137395443 + B4 SINE B4 1 291 -1 3 754 240 35 0 0 chr3 22204349 22204378 -137395405 + (CA)n Simple_repeat Simple_repeat 1 29 0 3 754 507 94 21 10 chr3 22204504 22204601 -137395182 + (CA)n Simple_repeat Simple_repeat 1 98 0 3 754 3711 48 0 7 chr3 22204754 22205176 -137394607 + L1Md_F3 LINE L1 6140 6560 -24 3 754 486 0 0 0 chr3 22205176 22205230 -137394553 + (TA)n Simple_repeat Simple_repeat 2 55 0 3 754 3711 48 0 7 chr3 22205230 22205243 -137394540 + L1Md_F3 LINE L1 6561 6572 -12 3 754 222 374 12 24 chr3 22205456 22205470 -137394313 - ID SINE ID -137 87 4 3 754 239 366 0 0 chr3 22205470 22205541 -137394242 - ID4_ SINE ID -9 74 4 3 754 827 238 46 9 chr3 22206299 22206515 -137393268 + B4 SINE B4 1 224 -68 3 754 586 218 24 37 chr3 22207423 22207558 -137392225 + ID_B1 SINE B4 84 224 0 3 754 213 348 43 33 chr3 22208783 22208875 -137390908 - PB1D7 SINE Alu -27 93 1 3 754 670 289 73 133 chr3 22208921 22209138 -137390645 - B4 SINE B4 -10 282 81 3 754 1940 200 171 39 chr3 22209138 22209605 -137390178 + MT2A LTR ERVL 1 529 -4 3 754 670 289 73 133 chr3 22209605 22209687 -137390096 - B4 SINE B4 -212 80 1 3 754 1383 196 78 35 chr3 22210112 22210456 -137389327 - ORR1E LTR MaLR 0 359 1 3 754 235 233 0 0 chr3 22210914 22210974 -137388809 + A-rich Low_complexity Low_complexity 1 60 0 3 754 199 98 19 38 chr3 22210985 22211038 -137388745 + A-rich Low_complexity Low_complexity 3 54 0 3 754 224 30 0 29 chr3 22211230 22211264 -137388519 + (TTTTTA)n Simple_repeat Simple_repeat 4 36 0 3 754 329 215 120 60 chr3 22212168 22212308 -137387475 + MTEa LTR MaLR 18 183 -196 3 754 974 252 25 5 chr3 22212334 22212537 -137387246 + MTD LTR MaLR 1 207 -212 3 754 4906 67 2 0 chr3 22213251 22213837 -137385946 + L1Md_F2 LINE L1 5996 6582 0 3 754 1552 98 13 4 chr3 22213851 22214076 -137385707 + L1_Mus3 LINE L1 6411 6637 -1 3 754 1479 87 16 0 chr3 22214312 22214497 -137385286 + B2_Mm2 SINE B2 1 188 -7 3 754 356 327 19 38 chr3 22214505 22214610 -137385173 + PB1 SINE Alu 1 103 -24 3 754 604 286 16 149 chr3 22214895 22215216 -137384567 + B4A SINE B4 1 278 -14 3 754 278 26 0 25 chr3 22215290 22215330 -137384453 + (CCAA)n Simple_repeat Simple_repeat 2 40 0 3 754 237 33 0 0 chr3 22216578 22216608 -137383175 + (CAAAC)n Simple_repeat Simple_repeat 1 30 0 3 754 282 150 0 91 chr3 22216679 22216745 -137383038 + B1_Mus1 SINE Alu 1 60 -88 3 754 254 0 0 159 chr3 22216746 22216872 -137382911 + (CAGAG)n Simple_repeat Simple_repeat 5 110 0 3 754 579 129 67 38 chr3 22216875 22216980 -137382803 + B1_Mur4 SINE Alu 43 150 0 3 754 1689 21 32 0 chr3 22218021 22218207 -137381576 + B2_Mm1t SINE B2 1 192 -1 3 754 483 323 15 0 chr3 22218286 22218416 -137381367 + B4A SINE B4 4 135 -157 3 754 281 286 71 71 chr3 22218371 22218484 -137381299 + PB1D10 SINE Alu 5 117 0 3 754 222 128 0 0 chr3 22218542 22218581 -137381202 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 3 754 258 292 28 0 chr3 22218613 22218685 -137381098 + B4A SINE B4 213 286 -6 3 754 423 0 0 0 chr3 22218718 22218765 -137381018 + (CA)n Simple_repeat Simple_repeat 2 48 0 3 754 406 242 66 23 chr3 22218874 22219030 -137380753 - ORR1D2 LTR MaLR -15 404 231 3 754 276 305 78 84 chr3 22219004 22219158 -137380625 - RLTR8 LTR ERVK -21 344 192 3 754 403 292 146 49 chr3 22219427 22219632 -137380151 - ORR1D2 LTR MaLR -127 243 19 3 754 829 186 0 0 chr3 22219986 22220115 -137379668 + B1_Mur2 SINE Alu 2 130 -19 3 754 458 314 8 32 chr3 22220239 22220364 -137379419 - B1F SINE Alu -8 141 20 3 754 305 397 6 62 chr3 22220364 22220393 -137379390 - ID_B1 SINE B4 -1 198 72 3 754 396 0 0 0 chr3 22220649 22220693 -137379090 + (TA)n Simple_repeat Simple_repeat 2 45 0 3 754 527 100 0 0 chr3 22220693 22220763 -137379020 - L1_Mus2 LINE L1 -5 6561 6492 3 754 1264 48 0 0 chr3 22221391 22221537 -137378246 - B1_Mus2 SINE Alu 0 147 2 3 754 329 335 40 75 chr3 22221920 22221933 -137377850 - B4A SINE B4 -44 248 238 3 754 826 268 53 14 chr3 22221933 22222141 -137377642 - ID_B1 SINE B4 -4 220 5 3 754 538 327 6 18 chr3 22222141 22222301 -137377482 - ID_B1 SINE B4 -55 237 81 3 754 285 367 77 22 chr3 22222347 22222406 -137377377 + B4A SINE B4 22 184 -108 3 754 324 305 44 79 chr3 22222406 22222520 -137377263 + PB1D9 SINE Alu 3 112 -8 3 754 996 151 22 6 chr3 22222532 22222712 -137377071 + B2_Mm2 SINE B2 5 187 -8 3 754 1232 266 38 81 chr3 22222738 22223483 -137376300 + L1_Rod LINE L1 3798 4516 -1364 3 754 4934 94 57 4 chr3 22223490 22224971 -137374812 - L1VL2 LINE L1 -1864 1751 197 3 754 24 32 0 0 chr3 22225503 22225534 -137374249 + AT_rich Low_complexity Low_complexity 1 31 0 3 754 5278 106 17 3 chr3 22225543 22226301 -137373482 - L1Md_F2 LINE L1 -12 6570 5802 3 754 388 0 0 0 chr3 22226301 22226348 -137373435 + L1_Mm LINE L1 5761 5807 -76 3 754 393 274 61 31 chr3 22227439 22227593 -137372190 + MER102a DNA MER1_type 54 211 -119 3 754 333 100 0 0 chr3 22227842 22227892 -137371891 + (TG)n Simple_repeat Simple_repeat 2 51 0 3 754 437 344 32 19 chr3 22227900 22228057 -137371726 - B4 SINE B4 -51 241 83 3 754 562 169 37 0 chr3 22228174 22228310 -137371473 - Lx9 LINE L1 -7 7637 7497 3 754 231 61 0 0 chr3 22228320 22228353 -137371430 + (TCTCTG)n Simple_repeat Simple_repeat 2 34 0 3 754 2375 189 41 20 chr3 22228353 22228892 -137370891 - Lx9 LINE L1 -398 7246 6697 3 754 438 143 0 0 chr3 22228984 22229047 -137370736 + B1_Mur1 SINE Alu 77 139 -10 3 754 537 16 0 0 chr3 22229047 22229109 -137370674 + (CAAAC)n Simple_repeat Simple_repeat 2 63 0 3 754 1050 88 0 0 chr3 22229374 22229521 -137370262 + (TTCTC)n Simple_repeat Simple_repeat 2 148 0 3 754 886 70 148 0 chr3 22229539 22229667 -137370116 - B1_Mus1 SINE Alu 0 148 2 3 754 801 84 0 0 chr3 22230164 22230283 -137369500 + (GA)n Simple_repeat Simple_repeat 2 120 0 3 754 336 164 0 0 chr3 22230298 22230365 -137369418 + (CAGAGA)n Simple_repeat Simple_repeat 6 72 0 3 754 828 0 0 0 chr3 22230808 22230900 -137368883 + (TTTC)n Simple_repeat Simple_repeat 3 94 0 3 754 672 234 29 7 chr3 22230902 22231040 -137368743 - B1_Mur1 SINE Alu -8 141 1 3 754 532 284 59 50 chr3 22231041 22231263 -137368520 - ID_B1 SINE B4 0 224 1 3 754 21 57 0 0 chr3 22231442 22231477 -137368306 + AT_rich Low_complexity Low_complexity 1 35 0 3 754 276 226 0 31 chr3 22231486 22231582 -137368201 - Lx9 LINE L1 -16 7628 7536 3 754 387 0 0 0 chr3 22231609 22231652 -137368131 + (CA)n Simple_repeat Simple_repeat 2 44 0 3 754 1318 235 46 37 chr3 22231652 22232085 -137367698 - Lx9 LINE L1 -243 7401 6965 3 754 326 321 53 6 chr3 22232834 22233003 -137366780 - MER31B LTR ERV1 0 466 290 3 754 251 167 15 0 chr3 22233200 22233266 -137366517 + GA-rich Low_complexity Low_complexity 1 67 0 3 754 302 233 181 19 chr3 22233865 22233970 -137365813 - MER31B LTR ERV1 -343 123 2 3 754 275 268 0 14 chr3 22234088 22234160 -137365623 + MER92C LTR ERV1 484 554 0 3 754 4012 191 11 1 chr3 22234237 22234998 -137364785 + L1_Mus2 LINE L1 356 1123 -5534 3 754 35310 31 2 7 chr3 22234998 22240383 -137359400 + L1Md_T LINE L1 232 5586 -297 3 754 8269 38 1 1 chr3 22240383 22241377 -137358406 + L1Md_T LINE L1 5587 6580 -2 3 754 22171 82 7 24 chr3 22241388 22241663 -137358120 + L1_Mus2 LINE L1 1108 1372 -4514 3 754 4319 74 25 3 chr3 22241663 22242235 -137357548 + L1Md_F2 LINE L1 5987 6570 -12 3 754 22171 156 26 16 chr3 22242235 22247368 -137352415 + L1_Mus2 LINE L1 1373 6565 -1 3 754 1753 116 205 0 chr3 22247380 22247707 -137352076 + L1_Mm LINE L1 5287 5680 -203 3 754 276 30 0 0 chr3 22247707 22247740 -137352043 + (TTTTA)n Simple_repeat Simple_repeat 2 34 0 3 754 3439 30 0 0 chr3 22248042 22248438 -137351345 - MTA_Mm LTR MaLR 0 396 1 3 754 5014 79 10 3 chr3 22248677 22249388 -137350395 + L1_Mus4 LINE L1 5671 6386 -250 3 754 333 314 0 0 chr3 22249897 22249967 -137349816 + B3A SINE B2 15 84 -114 3 754 666 0 0 0 chr3 22249973 22250047 -137349736 + (TC)n Simple_repeat Simple_repeat 1 74 0 3 754 180 0 0 0 chr3 22250141 22250161 -137349622 + (CCAA)n Simple_repeat Simple_repeat 2 21 0 3 754 234 0 0 0 chr3 22250168 22250194 -137349589 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 3 754 554 192 6 0 chr3 22251401 22251562 -137348221 + GA-rich Low_complexity Low_complexity 1 162 0 3 754 294 295 50 118 chr3 22252266 22252362 -137347421 + B1F2 SINE Alu 39 135 -14 3 754 858 90 0 0 chr3 22252362 22252496 -137347287 + (CCAA)n Simple_repeat Simple_repeat 2 135 0 3 754 294 295 50 118 chr3 22252496 22252518 -137347265 + B1F2 SINE Alu 136 149 0 3 754 201 74 0 0 chr3 22252556 22252583 -137347200 + (CAAAA)n Simple_repeat Simple_repeat 4 30 0 3 754 23 33 0 0 chr3 22252593 22252623 -137347160 + AT_rich Low_complexity Low_complexity 1 30 0 3 754 278 226 16 0 chr3 22252687 22252749 -137347034 - RMER15 LTR ERVL -105 470 408 3 754 437 269 51 25 chr3 22252777 22252895 -137346888 - Lx8 LINE L1 -253 7220 7100 3 754 4777 64 5 3 chr3 22252937 22253545 -137346238 - L1Md_F2 LINE L1 -12 6570 5962 3 754 261 221 34 34 chr3 22253889 22253978 -137345805 - LTR33A_ LTR ERVL 0 531 443 3 754 2221 152 8 19 chr3 22254511 22254886 -137344897 - ORR1B1 LTR MaLR 0 394 24 3 754 242 244 244 0 chr3 22255027 22255142 -137344641 - B1F2 SINE Alu -6 143 1 3 754 321 333 75 8 chr3 22255469 22255602 -137344181 - L1ME3 LINE L1 -67 6095 5954 3 754 301 287 167 0 chr3 22255708 22255858 -137343925 + MLT1J LTR MaLR 24 198 -167 3 754 362 361 61 34 chr3 22256203 22256498 -137343285 + MLT1J LTR MaLR 210 512 0 3 754 387 73 0 0 chr3 22257048 22257103 -137342680 + (TC)n Simple_repeat Simple_repeat 2 56 0 3 754 27 0 0 0 chr3 22257107 22257134 -137342649 + AT_rich Low_complexity Low_complexity 1 27 0 3 754 1336 52 0 6 chr3 22257451 22257624 -137342159 + L1_Mus1 LINE L1 6396 6567 0 3 754 473 0 18 0 chr3 22258121 22258178 -137341605 + (TCTA)n Simple_repeat Simple_repeat 4 61 0 3 754 1946 195 47 9 chr3 22259036 22259461 -137340322 - BGLII_B LTR ERVK 0 441 1 3 754 837 133 96 10 chr3 22259461 22259658 -137340125 - MYSERV16_I-int LTR ERVK 0 2326 2113 3 754 6756 83 13 0 chr3 22259664 22260919 -137338864 - L1Md_A LINE L1 -19 6563 5289 3 754 37461 32 2 6 chr3 22260902 22267091 -137332692 - L1Md_A LINE L1 0 6582 423 3 754 26226 94 11 1 chr3 22267093 22271728 -137328055 - L1VL1 LINE L1 -561 5322 639 4 754 618 117 0 0 chr3 22271724 22271818 -137327965 - L1VL1 LINE L1 -6131 507 414 4 754 5172 158 44 13 chr3 22271824 22272900 -137326883 - MYSERV16_I-int LTR ERVK -207 2119 1011 3 754 2747 39 9 152 chr3 22272902 22273355 -137326428 + RLTR10 LTR ERVK 1 388 -2 4 754 15770 24 3 52 chr3 22273357 22275444 -137324339 + RLTR10-int LTR ERVK 1 1984 -3 4 754 2767 39 9 152 chr3 22275446 22275901 -137323882 + RLTR10 LTR ERVK 1 390 0 4 754 1403 249 60 70 chr3 22275901 22276519 -137323264 - MYSERV16_I-int LTR ERVK -1314 1012 401 3 754 4212 86 61 8 chr3 22276566 22277175 -137322608 - L1_Mus1 LINE L1 0 6567 5927 4 754 4241 167 68 23 chr3 22277175 22278038 -137321745 + RLTR13D6 LTR ERVK 1 902 0 4 754 2503 87 0 0 chr3 22278040 22278457 -137321326 - L1_Mus1 LINE L1 -637 5930 5514 4 94 18275 131 10 25 chr3 22278457 22282354 -137317429 - L1_Mus1 LINE L1 -1654 4229 387 4 755 780 270 103 17 chr3 22282369 22282727 -137317056 + MYSERV16_I-int LTR ERVK 1580 1968 -358 4 755 23306 65 14 4 chr3 22282729 22285978 -137313805 + L1Md_F3 LINE L1 2304 5586 -297 4 755 7794 44 25 2 chr3 22285978 22286952 -137312831 + L1Md_F3 LINE L1 5587 6582 -2 4 755 945 83 8 0 chr3 22286953 22287086 -137312697 + L1Md_F2 LINE L1 5452 5585 -298 4 755 7593 71 9 0 chr3 22287087 22288074 -137311709 + L1Md_F2 LINE L1 5587 6582 0 4 755 665 236 69 21 chr3 22288694 22288910 -137310873 + RMER1A Other Other 188 476 -590 4 755 2763 188 57 9 chr3 22288910 22289453 -137310330 + RMER1B Other Other 345 913 -153 4 755 539 156 0 22 chr3 22289452 22289544 -137310239 + Lx LINE L1 6167 6256 -398 4 755 667 194 21 28 chr3 22289915 22290058 -137309725 + B1_Mus2 SINE Alu 5 146 -1 4 755 1223 294 34 14 chr3 22290871 22291226 -137308557 + MTEa LTR MaLR 18 379 0 4 755 1426 295 147 25 chr3 22291238 22292196 -137307587 + MTEa-int LTR MaLR 14 1120 -460 4 755 376 387 24 0 chr3 22292181 22292305 -137307478 - B4A SINE B4 -165 127 1 4 755 670 291 18 76 chr3 22293287 22293534 -137306249 - B4 SINE B4 -10 282 79 4 755 245 343 0 14 chr3 22293573 22293644 -137306139 - RSINE1 SINE B4 -85 80 11 4 755 772 243 104 18 chr3 22293921 22294250 -137305533 - MTEb LTR MaLR -2 377 1 4 755 646 260 7 7 chr3 22294466 22294621 -137305162 + RSINE1 SINE B4 2 156 -9 4 755 739 325 35 31 chr3 22295852 22296141 -137303642 + B4A SINE B4 1 290 -2 4 755 788 78 17 0 chr3 22299191 22299307 -137300476 + (TTTC)n Simple_repeat Simple_repeat 1 118 0 4 755 655 245 147 5 chr3 22299308 22299505 -137300278 - Lx5 LINE L1 0 7050 6826 4 755 598 361 9 5 chr3 22299760 22299980 -137299803 + B4A SINE B4 16 236 -56 4 755 537 30 0 0 chr3 22300069 22300136 -137299647 + (CA)n Simple_repeat Simple_repeat 2 68 0 4 755 225 0 0 0 chr3 22300863 22300888 -137298895 + (TC)n Simple_repeat Simple_repeat 2 26 0 4 755 230 217 14 0 chr3 22300888 22300957 -137298826 + (TA)n Simple_repeat Simple_repeat 2 71 0 4 755 532 323 19 0 chr3 22301067 22301228 -137298555 - RSINE1 SINE B4 0 165 2 4 755 704 192 134 0 chr3 22301330 22301502 -137298281 - RMER1B Other Other -11 1055 861 4 755 4290 105 8 2 chr3 22301511 22302140 -137297643 - L1_Mus4 LINE L1 0 6636 6004 4 755 756 33 0 0 chr3 22302141 22302232 -137297551 + (TTTTC)n Simple_repeat Simple_repeat 4 94 0 4 755 7899 103 11 1 chr3 22302236 22304182 -137295601 - L1_Mus1 LINE L1 0 6567 4602 4 755 6975 37 16 0 chr3 22304194 22305079 -137294704 - L1Md_F2 LINE L1 -13 6569 5671 4 755 912 202 0 27 chr3 22305075 22305294 -137294489 - L1VL1 LINE L1 -6209 213 1 4 755 3521 111 15 26 chr3 22305293 22306133 -137293650 - L1Md_F LINE L1 -5393 1223 621 4 755 6537 76 98 2 chr3 22306134 22307094 -137292689 - MTA_Mm-int LTR MaLR -46 1052 1 4 755 3285 43 8 0 chr3 22307094 22307487 -137292296 - MTA_Mm LTR MaLR 0 396 1 4 755 505 370 109 3 chr3 22307487 22308106 -137291677 - RMER1A Other Other -584 446 1 4 755 943 277 120 12 chr3 22308091 22308424 -137291359 - RMER1B Other Other -651 415 47 4 755 3124 58 2 21 chr3 22310225 22310648 -137289135 - L1Md_F2 LINE L1 -2 6580 6166 4 755 2651 173 97 133 chr3 22310795 22311544 -137288239 - RLTR13D6 LTR ERVK 0 902 188 4 755 3258 44 0 0 chr3 22311544 22311932 -137287851 + L1Md_F3 LINE L1 6180 6567 -17 4 755 198 0 0 0 chr3 22311938 22311960 -137287823 + (TAAAA)n Simple_repeat Simple_repeat 2 23 0 4 755 2651 173 97 133 chr3 22311960 22312129 -137287654 - RLTR13D6 LTR ERVK -725 177 11 4 755 21 0 0 0 chr3 22312303 22312324 -137287459 + AT_rich Low_complexity Low_complexity 1 21 0 4 755 33540 44 1 3 chr3 22312343 22317576 -137282207 + L1Md_Gf LINE L1 263 5581 -305 4 755 10692 27 1 0 chr3 22317573 22318888 -137280895 + L1Md_A LINE L1 4270 5586 -297 4 755 8407 37 0 0 chr3 22318889 22319884 -137279899 + L1Md_A LINE L1 5588 6582 0 4 755 8286 41 1 0 chr3 22319909 22320950 -137278833 + L1Md_T LINE L1 5587 6582 0 4 755 647 302 78 82 chr3 22321712 22322218 -137277565 - MT2A LTR ERVL -44 511 4 4 755 481 220 0 10 chr3 22322758 22322859 -137276924 - MTE2b LTR MaLR -6 373 274 4 755 897 218 116 72 chr3 22322858 22323150 -137276633 + RLTR20C LTR ERVK 8 312 -222 4 755 327 180 0 16 chr3 22323147 22323209 -137276574 + RLTR20C LTR ERVK 423 483 -95 4 755 746 275 31 18 chr3 22324356 22324519 -137275264 - RSINE1 SINE B4 0 165 1 4 755 215 93 23 0 chr3 22324632 22324675 -137275108 + (TTTG)n Simple_repeat Simple_repeat 2 45 0 4 755 5670 94 17 16 chr3 22325102 22325942 -137273841 - L1_Mus3 LINE L1 -6 6632 5792 4 755 431 66 0 0 chr3 22325942 22326003 -137273780 + L1_Mus3 LINE L1 5736 5796 -840 4 755 2483 134 7 15 chr3 22326001 22326455 -137273328 - L1_Mm LINE L1 -1596 4287 3838 4 755 6621 126 31 18 chr3 22326463 22327548 -137272235 - Lx3_Mus LINE L1 0 7009 5910 4 755 7427 58 6 8 chr3 22327578 22328807 -137270976 - L1Md_F2 LINE L1 0 6582 5357 4 755 8598 6 0 0 chr3 22328819 22330168 -137269615 - L1Md_A LINE L1 0 6582 5249 4 755 926 75 0 7 chr3 22330169 22330304 -137269479 - ORR1A1 LTR MaLR -210 136 3 4 755 7439 79 18 2 chr3 22330306 22331342 -137268441 - ORR1A1-int LTR MaLR 0 1792 740 4 755 1288 123 0 35 chr3 22331342 22331570 -137268213 - L1VL4 LINE L1 -1402 2157 1938 4 755 691 176 0 46 chr3 22331570 22331701 -137268082 - RMER17B LTR ERVK 0 958 834 4 755 2769 92 5 10 chr3 22331686 22332081 -137267702 - RMER17B LTR ERVK -565 393 1 4 755 6738 124 13 10 chr3 22332081 22333716 -137266067 - L1VL4 LINE L1 -1616 1943 303 4 755 441 81 0 0 chr3 22333854 22333916 -137265867 + (TG)n Simple_repeat Simple_repeat 1 62 0 4 755 477 47 0 0 chr3 22333916 22333979 -137265804 + (GA)n Simple_repeat Simple_repeat 1 64 0 4 755 714 124 0 0 chr3 22334123 22334244 -137265539 + (TG)n Simple_repeat Simple_repeat 1 121 0 4 755 634 327 6 0 chr3 22334247 22334403 -137265380 - B3A SINE B2 -37 161 5 4 755 1023 305 72 9 chr3 22334733 22335276 -137264507 - L1MA4 LINE L1 -373 5927 5351 4 755 657 287 92 94 chr3 22335321 22335530 -137264253 + MTD LTR MaLR 27 269 -150 4 755 1128 124 0 0 chr3 22335530 22335708 -137264075 + (TTCC)n Simple_repeat Simple_repeat 3 180 0 4 755 657 273 50 100 chr3 22335708 22335857 -137263926 + MTD LTR MaLR 270 415 -4 4 755 308 259 113 6 chr3 22335882 22336041 -137263742 - L1MA4 LINE L1 -845 5298 5123 4 755 230 325 125 25 chr3 22336458 22336578 -137263205 - B4 SINE B4 0 292 161 4 755 293 301 0 27 chr3 22336635 22336710 -137263073 - B4A SINE B4 -217 75 3 4 755 396 245 32 0 chr3 22337491 22337585 -137262198 + B1F2 SINE Alu 1 97 -52 4 755 784 266 21 233 chr3 22337713 22337781 -137262002 - ORR1D1 LTR MaLR 0 378 308 4 755 312 86 103 0 chr3 22337781 22337839 -137261944 + L1_Mus2 LINE L1 6502 6565 -1 4 755 1004 239 14 133 chr3 22337839 22338250 -137261533 - ORR1D1 LTR MaLR -71 307 1 4 755 26 30 0 0 chr3 22338354 22338387 -137261396 + AT_rich Low_complexity Low_complexity 1 33 0 4 755 3751 50 35 4 chr3 22338693 22339174 -137260609 + L1Md_F2 LINE L1 6085 6580 -2 4 755 329 344 23 8 chr3 22339436 22339565 -137260218 - MTEb LTR MaLR 0 379 249 4 755 644 262 152 15 chr3 22339618 22339816 -137259967 + ORR1E LTR MaLR 31 255 -104 4 755 497 202 133 0 chr3 22339843 22340031 -137259752 - Lx9 LINE L1 -8 7636 7424 4 755 350 255 21 11 chr3 22340031 22340126 -137259657 + ORR1E LTR MaLR 284 379 0 4 755 1112 264 57 26 chr3 22340871 22341136 -137258647 + B4A SINE B4 1 273 -19 4 755 315 0 0 0 chr3 22341137 22341172 -137258611 + (CA)n Simple_repeat Simple_repeat 1 35 0 4 755 324 0 0 0 chr3 22341226 22341262 -137258521 + (CA)n Simple_repeat Simple_repeat 2 37 0 4 755 372 304 55 75 chr3 22341291 22341490 -137258293 + MLT1E2 LTR MaLR 15 209 -418 4 755 247 284 81 0 chr3 22341595 22341669 -137258114 + MLT1E2 LTR MaLR 383 462 -43 4 755 225 159 0 0 chr3 22342709 22342753 -137257030 + CT-rich Low_complexity Low_complexity 5 48 0 4 755 250 312 125 83 chr3 22343117 22343132 -137256651 - B4A SINE B4 -55 237 182 4 755 391 271 136 56 chr3 22343132 22343257 -137256526 - B1F1 SINE Alu -7 142 8 4 755 250 312 125 83 chr3 22343257 22343285 -137256498 - B4A SINE B4 -55 181 63 4 755 257 312 41 10 chr3 22344334 22344431 -137255352 - Cheshire DNA MER1_type -2147 273 174 4 755 1062 330 70 42 chr3 22344501 22345042 -137254741 - Lx5 LINE L1 -13 7037 6482 4 755 706 296 18 0 chr3 22345039 22345297 -137254486 - Lx5 LINE L1 -874 6586 6108 4 755 650 291 19 14 chr3 22345540 22345749 -137254034 - B3 SINE B2 -5 211 2 4 755 6051 66 14 36 chr3 22345769 22346604 -137253179 - L1_Mus2 LINE L1 0 6566 5750 4 755 342 254 45 0 chr3 22346984 22347085 -137252698 - ID4_ SINE ID -45 107 5 4 755 37255 28 1 9 chr3 22347095 22352613 -137247170 - L1Md_A LINE L1 -1 6581 1108 4 755 37274 60 1 23 chr3 22352629 22359509 -137240274 - L1Md_T LINE L1 0 6582 99 4 755 3723 57 0 4 chr3 22359504 22360013 -137239770 - L1Md_A LINE L1 -5596 1128 622 4 755 326 323 101 6 chr3 22360240 22360399 -137239384 - RMER15 LTR ERVL -1 574 401 4 755 729 258 30 6 chr3 22360423 22360591 -137239192 + B3 SINE B2 41 212 -4 4 755 432 318 70 0 chr3 22361781 22361910 -137237873 - ID_B1 SINE B4 0 224 87 4 755 5723 242 71 38 chr3 22361919 22362139 -137237644 - Lx6 LINE L1 -15 7445 7232 4 755 7063 62 12 0 chr3 22362139 22363017 -137236766 - RLTR13B1 LTR ERVK -4 889 1 4 755 5723 242 71 38 chr3 22363017 22364409 -137235374 - Lx6 LINE L1 -229 7231 5780 4 755 189 0 0 0 chr3 22364409 22364430 -137235353 + (T)n Simple_repeat Simple_repeat 1 21 0 4 755 3384 157 58 46 chr3 22364430 22365045 -137234738 - L1_Mur3 LINE L1 -1454 4426 3819 4 755 516 32 0 0 chr3 22365045 22365107 -137234676 + (TCTA)n Simple_repeat Simple_repeat 4 65 0 4 755 3384 157 58 46 chr3 22365107 22365341 -137234442 - L1_Mur3 LINE L1 -2062 3818 3568 4 755 3748 247 80 22 chr3 22365319 22367263 -137232520 - L1_Mur3 LINE L1 -3976 1904 18 4 755 567 309 23 68 chr3 22367987 22368206 -137231577 - B3 SINE B2 -7 209 1 4 755 1086 100 0 0 chr3 22368345 22368657 -137231126 + (TG)n Simple_repeat Simple_repeat 1 312 0 4 755 688 239 31 49 chr3 22368657 22368807 -137230976 - B3A SINE B2 -44 154 4 4 755 421 344 105 30 chr3 22369026 22369293 -137230490 - B4 SINE B4 -1 291 5 4 755 295 310 84 15 chr3 22369828 22369959 -137229824 - MTEa LTR MaLR 0 379 240 4 755 235 278 0 18 chr3 22370161 22370216 -137229567 - MTEa LTR MaLR -305 54 1 4 755 237 321 18 18 chr3 22370218 22370332 -137229451 + B4A SINE B4 1 114 -178 5 755 6867 36 0 0 chr3 22371302 22372182 -137227601 - L1Md_T LINE L1 0 6582 5722 5 755 191 140 0 20 chr3 22372344 22372395 -137227388 + (CAA)n Simple_repeat Simple_repeat 2 51 0 5 755 818 274 9 61 chr3 22372408 22372637 -137227146 - B4 SINE B4 -70 222 6 5 755 316 169 13 13 chr3 22373960 22374038 -137225745 + CT-rich Low_complexity Low_complexity 3 80 0 5 755 792 294 91 36 chr3 22374097 22374372 -137225411 - B4 SINE B4 0 292 3 5 755 516 81 0 0 chr3 22374407 22374481 -137225302 + (TAG)n Simple_repeat Simple_repeat 3 76 0 5 755 674 309 142 42 chr3 22375274 22375534 -137224249 + B4 SINE B4 7 292 0 5 755 310 341 8 0 chr3 22376860 22376989 -137222794 + MIR SINE MIR 100 229 -33 5 755 234 182 30 15 chr3 22377150 22377217 -137222566 + (TA)n Simple_repeat Simple_repeat 1 68 0 5 755 288 279 81 0 chr3 22378992 22379103 -137220680 - L1MA4 LINE L1 -359 5941 5822 5 755 194 237 41 0 chr3 22379137 22379234 -137220549 + (TA)n Simple_repeat Simple_repeat 1 101 0 5 755 21 57 0 0 chr3 22379234 22379269 -137220514 + AT_rich Low_complexity Low_complexity 1 35 0 5 755 629 274 110 39 chr3 22379271 22379708 -137220075 - L1MA4 LINE L1 -516 5784 5314 5 755 347 215 47 47 chr3 22380036 22380163 -137219620 - L1MA4 LINE L1 -997 5146 5020 5 755 675 238 101 20 chr3 22380440 22380788 -137218995 - L1MA4 LINE L1 -1710 4433 4058 5 755 183 42 0 0 chr3 22380795 22380819 -137218964 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 5 755 1188 43 0 0 chr3 22380819 22380957 -137218826 - B1_Mm SINE Alu -9 138 1 5 755 467 358 47 21 chr3 22381320 22381511 -137218272 + B3A SINE B2 3 198 0 5 755 535 301 55 21 chr3 22381632 22381961 -137217822 - L1MA4 LINE L1 -3550 2593 2254 5 755 489 265 0 0 chr3 22381979 22382077 -137217706 + B1F1 SINE Alu 1 98 -51 5 755 335 282 9 72 chr3 22382077 22382090 -137217693 + ID_B1 SINE B4 82 185 -39 5 755 552 30 0 0 chr3 22382095 22382161 -137217622 + (CCAA)n Simple_repeat Simple_repeat 2 67 0 5 755 254 306 78 35 chr3 22382173 22382288 -137217495 - B1F SINE Alu -7 142 23 5 755 31477 99 32 9 chr3 22382313 22388514 -137211269 - L1Md_F2 LINE L1 0 6582 242 5 755 376 339 35 29 chr3 22388853 22389023 -137210760 - B3A SINE B2 0 198 28 5 755 405 169 0 0 chr3 22389510 22389593 -137210190 + (CA)n Simple_repeat Simple_repeat 2 84 0 5 755 863 294 53 29 chr3 22390186 22390523 -137209260 - ORR1E LTR MaLR 0 370 1 5 755 210 50 23 91 chr3 22390573 22390598 -137209185 + T-rich Low_complexity Low_complexity 18 42 0 5 755 1031 101 29 0 chr3 22390598 22390737 -137209046 - B1_Mus1 SINE Alu -5 143 1 5 755 210 50 23 91 chr3 22390737 22390755 -137209028 + T-rich Low_complexity Low_complexity 2 17 0 5 755 586 137 131 46 chr3 22390781 22390913 -137208870 - B1_Mus1 SINE Alu 0 148 12 5 755 764 290 99 39 chr3 22392374 22392406 -137207377 + MTD LTR MaLR 18 55 -364 5 755 765 0 0 0 chr3 22392406 22392491 -137207292 + (GAA)n Simple_repeat Simple_repeat 1 85 0 5 755 764 290 99 39 chr3 22392491 22392820 -137206963 + MTD LTR MaLR 56 401 -18 5 755 1895 177 31 11 chr3 22393363 22393716 -137206067 - ORR1B1 LTR MaLR 0 394 35 5 755 1112 169 14 28 chr3 22393716 22393839 -137205944 - ORR1B1-int LTR MaLR 0 1963 1845 5 755 2822 84 18 8 chr3 22393839 22394235 -137205548 + MTB LTR MaLR 1 400 0 5 755 1112 138 44 35 chr3 22394235 22394375 -137205408 - ORR1B1-int LTR MaLR -119 1844 1754 5 755 1034 237 48 154 chr3 22394375 22394973 -137204810 - L1VL4 LINE L1 -5569 733 199 5 755 697 180 53 0 chr3 22394983 22395133 -137204650 - Lx5 LINE L1 -1016 6034 5877 5 755 27798 94 4 48 chr3 22395131 22399797 -137199986 + L1Md_F2 LINE L1 1128 5585 -298 5 755 7259 76 14 5 chr3 22399798 22400785 -137198998 + L1Md_F2 LINE L1 5587 6582 0 5 755 513 238 134 23 chr3 22400794 22400966 -137198817 - Lx9 LINE L1 -664 6980 6790 5 755 1924 232 84 12 chr3 22400963 22401543 -137198240 + Lx9 LINE L1 7015 7636 -8 5 755 6252 210 72 40 chr3 22402115 22404807 -137194976 - Lx6 LINE L1 0 7460 4625 5 755 663 72 27 0 chr3 22404807 22404918 -137194865 + (TG)n Simple_repeat Simple_repeat 2 115 0 5 755 5180 190 44 58 chr3 22404918 22404964 -137194819 - Lx6 LINE L1 -1256 4624 4593 5 755 1039 76 14 7 chr3 22404964 22405110 -137194673 + B1_Mus1 SINE Alu 2 148 0 5 755 5180 190 44 58 chr3 22405110 22405293 -137194490 - Lx6 LINE L1 -1288 4592 4460 5 755 7000 133 15 5 chr3 22405317 22407289 -137192494 - Lx LINE L1 0 6654 4660 5 755 211 273 154 13 chr3 22407385 22407463 -137192320 - MIRc SINE MIR -122 146 58 5 755 188 333 0 68 chr3 22407589 22407663 -137192120 - MIR SINE MIR -178 84 16 5 755 187 198 50 0 chr3 22408789 22408841 -137190942 + (TG)n Simple_repeat Simple_repeat 2 58 0 5 755 879 53 0 0 chr3 22408841 22408954 -137190829 + (GA)n Simple_repeat Simple_repeat 1 113 0 5 755 187 198 50 0 chr3 22408954 22409002 -137190781 + (TG)n Simple_repeat Simple_repeat 2 49 0 5 755 534 270 127 99 chr3 22409010 22409294 -137190489 - B4A SINE B4 0 292 1 5 755 4227 201 88 33 chr3 22410061 22411197 -137188586 - Lx2B LINE L1 -18 6982 5784 5 755 2461 34 0 0 chr3 22411761 22412052 -137187731 + L1Md_T LINE L1 6291 6581 -1 5 755 3170 216 63 76 chr3 22412059 22413152 -137186631 + L1VL1 LINE L1 31 1109 -5313 5 94 4169 116 0 6 chr3 22413152 22413829 -137185954 - L1_Mm LINE L1 -3160 2723 2051 5 756 37791 26 0 6 chr3 22413829 22420014 -137179769 - L1Md_A LINE L1 0 6582 441 5 756 1193 140 18 0 chr3 22420021 22420250 -137179533 - MusHAL1 LINE L1 -1853 859 627 5 756 19907 110 16 33 chr3 22420250 22420736 -137179047 + L1_Mus1 LINE L1 1247 1703 -4180 5 756 1029 93 0 0 chr3 22420736 22420875 -137178908 - B1_Mus2 SINE Alu -7 140 2 5 756 19907 110 16 33 chr3 22420875 22421254 -137178529 + L1_Mus1 LINE L1 1704 2070 -3813 5 756 272 27 27 0 chr3 22421254 22421291 -137178492 + (CAA)n Simple_repeat Simple_repeat 2 39 0 5 756 19907 110 16 33 chr3 22421291 22423851 -137175932 + L1_Mus1 LINE L1 2071 4613 -1270 5 756 202 173 0 37 chr3 22425757 22425811 -137173972 + T-rich Low_complexity Low_complexity 2 53 0 5 756 519 17 0 0 chr3 22425899 22425959 -137173824 + (GA)n Simple_repeat Simple_repeat 2 61 0 5 756 8980 84 9 2 chr3 22425960 22427903 -137171880 + L1_Mus1 LINE L1 4607 6567 0 5 756 4986 106 65 6 chr3 22427925 22428731 -137171052 + L1_Mus3 LINE L1 5786 6638 0 5 756 21 0 0 0 chr3 22428823 22428844 -137170939 + AT_rich Low_complexity Low_complexity 1 21 0 5 756 544 118 0 38 chr3 22429152 22429258 -137170525 + GA-rich Low_complexity Low_complexity 2 103 0 5 756 961 61 2 2 chr3 22430425 22430562 -137169221 - B1_Mus1 SINE Alu 0 149 13 5 756 198 171 0 0 chr3 22431132 22431173 -137168610 + GA-rich Low_complexity Low_complexity 2 42 0 5 756 6318 62 9 6 chr3 22432012 22432818 -137166965 + RLTR13C2 LTR ERVK 1 808 0 5 756 750 78 0 0 chr3 22433338 22433440 -137166343 + (TTCC)n Simple_repeat Simple_repeat 4 105 0 5 756 201 74 0 0 chr3 22433440 22433467 -137166316 + (TC)n Simple_repeat Simple_repeat 1 27 0 5 756 277 278 32 43 chr3 22434195 22434289 -137165494 - PB1D10 SINE Alu -12 105 13 5 756 1090 181 5 73 chr3 22434665 22434885 -137164898 - ORR1C1 LTR MaLR 0 378 174 5 756 449 115 0 13 chr3 22434900 22434979 -137164804 + (GGGA)n Simple_repeat Simple_repeat 3 80 0 5 756 782 222 169 15 chr3 22434979 22435058 -137164725 - ORR1C1 LTR MaLR -119 265 164 5 756 282 73 0 0 chr3 22435058 22435099 -137164684 + (CAGA)n Simple_repeat Simple_repeat 1 41 0 5 756 782 204 118 18 chr3 22435099 22435244 -137164539 - ORR1C1 LTR MaLR -215 163 1 5 756 420 123 0 0 chr3 22435250 22435323 -137164460 + (CCA)n Simple_repeat Simple_repeat 1 73 0 5 756 398 335 85 35 chr3 22435370 22435563 -137164220 + MTEa-int LTR MaLR 720 922 -658 5 756 361 287 48 67 chr3 22435563 22435793 -137163990 + RLTR16 LTR ERVK 3 279 -413 5 756 2087 307 36 7 chr3 22436214 22436827 -137162956 + MTEa-int LTR MaLR 948 1578 -2 5 756 1099 300 78 64 chr3 22436829 22437134 -137162649 + MTEa LTR MaLR 1 312 -67 5 756 1034 262 43 74 chr3 22437134 22437525 -137162258 + MTE2b LTR MaLR 1 379 0 5 756 1099 300 78 64 chr3 22437525 22437593 -137162190 + MTEa LTR MaLR 313 379 0 5 756 482 340 59 31 chr3 22437682 22437904 -137161879 - ORR1E LTR MaLR -127 232 5 5 756 385 294 44 31 chr3 22437922 22438147 -137161636 - L1M2 LINE L1 -1290 4853 4626 5 756 653 262 80 49 chr3 22438161 22438386 -137161397 + RMER2 LTR ERV1 116 347 -220 5 756 961 133 25 0 chr3 22438600 22438758 -137161025 + B2_Mm2 SINE B2 23 184 -11 5 756 465 261 102 52 chr3 22438868 22439272 -137160511 - L1M2 LINE L1 -1651 4492 4069 5 756 988 263 99 49 chr3 22439282 22439626 -137160157 - MTEb LTR MaLR -18 361 1 5 756 757 296 109 47 chr3 22439649 22440231 -137159552 - L1M2 LINE L1 -2121 4022 3375 5 756 5718 95 5 27 chr3 22440231 22441079 -137158704 + L1_Mus3 LINE L1 5808 6636 -2 5 756 757 296 109 47 chr3 22441079 22441383 -137158400 - L1M2 LINE L1 -2769 3374 3081 5 756 270 318 35 35 chr3 22441507 22441569 -137158214 - L1M2 LINE L1 -3812 2331 2271 5 756 1172 106 0 6 chr3 22441569 22441749 -137158034 + (TTC)n Simple_repeat Simple_repeat 2 180 0 5 756 270 318 35 35 chr3 22441749 22441888 -137157895 - L1M2 LINE L1 -3873 2270 2130 5 756 18950 104 6 3 chr3 22442803 22444888 -137154895 - L1Md_F LINE L1 -1661 4222 2162 5 756 1350 85 11 0 chr3 22444888 22445076 -137154707 - B2_Mm1t SINE B2 -2 191 2 5 756 18950 131 10 50 chr3 22445076 22446565 -137153218 - L1Md_F LINE L1 -3722 2161 725 5 756 414 260 16 8 chr3 22446573 22446701 -137153082 - L1Md_F LINE L1 -5813 803 675 5 756 366 186 93 157 chr3 22446774 22446946 -137152837 - L1VL1 LINE L1 -6060 362 202 5 756 507 107 0 0 chr3 22446955 22447030 -137152753 + (TTCC)n Simple_repeat Simple_repeat 2 76 0 5 756 522 147 184 0 chr3 22447032 22447141 -137152642 - ORR1B1 LTR MaLR -51 343 215 5 756 4330 71 7 41 chr3 22447156 22447760 -137152023 - L1_Mus1 LINE L1 0 6567 5985 5 756 5274 164 65 5 chr3 22447760 22449425 -137150358 + Lx LINE L1 4883 6649 -5 5 756 207 167 0 0 chr3 22449427 22449469 -137150314 + A-rich Low_complexity Low_complexity 1 42 0 5 756 1163 126 33 0 chr3 22449717 22449899 -137149884 - B2_Mm2 SINE B2 -7 188 1 5 756 220 247 69 69 chr3 22449904 22449991 -137149792 - PB1D9 SINE Alu 0 120 34 5 756 183 344 45 22 chr3 22450069 22450203 -137149580 + MIRb SINE MIR 132 268 0 5 756 2524 86 0 96 chr3 22451779 22452176 -137147607 + RLTR10D LTR ERVK 1 359 0 5 756 221 193 32 81 chr3 22452648 22452710 -137147073 + L2a LINE L2 3367 3425 -1 5 756 649 247 36 0 chr3 22453237 22453403 -137146380 + L1VL4 LINE L1 616 787 -5515 5 756 684 209 153 13 chr3 22453397 22453625 -137146158 + L1_Mur3 LINE L1 1203 1462 -4415 5 756 1691 155 14 0 chr3 22453616 22453913 -137145870 - L1_Mur2 LINE L1 -1663 4214 3914 5 756 1652 156 46 16 chr3 22453913 22454220 -137145563 + Lx LINE L1 6332 6647 -7 5 756 240 35 0 0 chr3 22454252 22454281 -137145502 + (TA)n Simple_repeat Simple_repeat 1 29 0 5 756 2171 220 44 7 chr3 22454558 22455131 -137144652 + L1_Mur3 LINE L1 1436 2029 -3851 5 756 189 0 0 0 chr3 22455132 22455153 -137144630 + (CA)n Simple_repeat Simple_repeat 2 22 0 5 756 937 195 25 109 chr3 22455200 22455522 -137144261 + MMETn-int LTR ERVK 2 296 -4548 5 756 341 152 0 17 chr3 22455515 22455575 -137144208 + ETnERV2-int LTR ERVK 2091 2149 -5095 6 756 254 133 0 0 chr3 22456016 22456061 -137143722 + RLTR19-int LTR ERVK 144 188 -5218 6 756 645 192 25 0 chr3 22456136 22456256 -137143527 + RLTR19-int LTR ERVK 938 1060 -5077 6 756 554 271 0 49 chr3 22456269 22456432 -137143351 + ETnERV2-int LTR ERVK 2454 2608 -4798 6 756 6016 172 42 31 chr3 22456432 22458446 -137141337 + ETnERV2-int LTR ERVK 1995 4085 -3321 6 756 1282 168 34 11 chr3 22458586 22458849 -137140934 + ETnERV2-int LTR ERVK 6222 6451 -955 6 756 311 109 0 68 chr3 22458925 22458984 -137140799 + RLTR45-int LTR ERVK 6017 6071 -1173 6 756 1671 124 4 4 chr3 22458998 22459248 -137140535 + ETnERV3-int LTR ERVK 5529 5778 -30 6 756 1832 189 86 3 chr3 22459261 22459644 -137140139 + RLTR13D6 LTR ERVK 1 415 -487 6 756 306 157 127 14 chr3 22459661 22459732 -137140051 + RLTR13D6 LTR ERVK 459 537 -365 6 756 512 41 26 64 chr3 22459732 22459810 -137139973 + ETnERV2-int LTR ERVK 7329 7403 -3 6 756 1575 135 199 20 chr3 22459812 22460159 -137139624 + RLTR9E LTR ERVK 1 409 0 6 756 1065 209 93 21 chr3 22460168 22460190 -137139593 + Lx4B LINE L1 2027 2049 -3837 6 756 387 0 0 0 chr3 22460190 22460233 -137139550 + (CA)n Simple_repeat Simple_repeat 2 44 0 6 756 1298 181 37 1 chr3 22460233 22460499 -137139284 + Lx4B LINE L1 2050 2336 -3550 6 756 7290 97 24 7 chr3 22460502 22461754 -137138029 - L1_Mus3 LINE L1 0 6638 5371 6 756 1614 179 10 0 chr3 22461744 22462052 -137137731 + L1_Mm LINE L1 5094 5404 -479 6 756 12984 164 47 36 chr3 22462037 22462962 -137136821 + Lx4B LINE L1 2305 3222 -2655 6 756 366 23 0 0 chr3 22462962 22463005 -137136778 + (GA)n Simple_repeat Simple_repeat 1 43 0 6 756 12984 164 47 36 chr3 22463005 22463230 -137136553 + Lx4B LINE L1 3223 3466 -2411 6 756 4272 140 31 107 chr3 22463230 22464206 -137135577 + RLTR13D6 LTR ERVK 1 902 0 6 756 12984 164 47 36 chr3 22464206 22464760 -137135023 + Lx4B LINE L1 3467 4074 -1803 6 756 375 23 0 0 chr3 22464760 22464804 -137134979 + (TC)n Simple_repeat Simple_repeat 2 45 0 6 756 12984 164 47 36 chr3 22464804 22465328 -137134455 + Lx4B LINE L1 4075 4605 -1272 6 756 365 157 0 0 chr3 22465328 22465379 -137134404 - 5S rRNA rRNA -70 51 1 6 756 12984 164 47 36 chr3 22465379 22465783 -137134000 + Lx4B LINE L1 4606 5017 -860 6 756 33080 75 4 16 chr3 22465802 22470977 -137128806 + L1Md_F2 LINE L1 477 5586 -297 6 756 7756 61 2 0 chr3 22470977 22471959 -137127824 + L1Md_F2 LINE L1 5587 6570 -12 6 756 1114 146 10 0 chr3 22471983 22472175 -137127608 - L1_Mur2 LINE L1 -1595 4282 4089 6 756 5423 182 35 17 chr3 22472154 22473712 -137126071 + Lx4B LINE L1 5052 6654 -404 6 756 21 57 0 0 chr3 22473854 22473889 -137125894 + AT_rich Low_complexity Low_complexity 1 35 0 6 756 526 231 99 33 chr3 22473895 22474016 -137125767 + RSINE1 SINE B4 6 134 -31 6 756 382 376 141 9 chr3 22474062 22474403 -137125380 - MLT1I LTR MaLR -2 409 24 6 756 1097 286 54 35 chr3 22475006 22475466 -137124317 + Lx9 LINE L1 7003 7471 -173 6 756 1029 157 55 15 chr3 22475487 22475687 -137124096 + RMER17D2 LTR ERVK 602 809 0 6 756 1757 161 55 0 chr3 22475801 22476111 -137123672 - ORR1A2 LTR MaLR 0 327 1 6 756 24 85 0 0 chr3 22476861 22476920 -137122863 + AT_rich Low_complexity Low_complexity 1 59 0 6 756 630 0 0 0 chr3 22476964 22477034 -137122749 + (GA)n Simple_repeat Simple_repeat 1 70 0 6 756 1380 302 59 12 chr3 22477803 22478382 -137121401 + Lx8 LINE L1 6792 7397 -76 6 756 234 116 0 0 chr3 22478641 22478684 -137121099 + (TATG)n Simple_repeat Simple_repeat 2 44 0 6 756 1054 40 28 28 chr3 22478684 22478863 -137120920 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 6 756 482 346 24 49 chr3 22478894 22479058 -137120725 - RSINE1 SINE B4 -4 161 2 6 756 16370 184 19 39 chr3 22479081 22483672 -137116111 - Lx5 LINE L1 -4 7046 2502 6 756 291 85 0 0 chr3 22483678 22483725 -137116058 + (TTTA)n Simple_repeat Simple_repeat 1 47 0 6 756 6715 134 11 12 chr3 22483725 22485466 -137114317 - L1_Mus4 LINE L1 -33 6603 4865 6 756 296 299 12 99 chr3 22485496 22485667 -137114116 + L1_Mus1 LINE L1 453 608 -6030 6 756 26418 112 58 7 chr3 22485745 22490871 -137108912 + L1_Mus1 LINE L1 1152 6567 0 6 756 17596 177 31 10 chr3 22490889 22495112 -137104671 - L1VL4 LINE L1 -1008 4878 562 6 756 1735 222 36 47 chr3 22495119 22495166 -137104617 - L1_Mur3 LINE L1 -1117 4763 4726 6 756 207 0 0 0 chr3 22495166 22495189 -137104594 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 6 756 1735 222 36 47 chr3 22495189 22495275 -137104508 - L1_Mur3 LINE L1 -1155 4725 4630 6 756 333 0 0 0 chr3 22495275 22495312 -137104471 + (TC)n Simple_repeat Simple_repeat 2 38 0 6 756 300 27 0 0 chr3 22495312 22495348 -137104435 + (TG)n Simple_repeat Simple_repeat 2 38 0 6 756 1735 222 36 47 chr3 22495348 22495766 -137104017 - L1_Mur3 LINE L1 -1251 4629 4218 6 756 294 56 0 0 chr3 22495791 22495827 -137103956 + Lx3B LINE L1 6361 6396 -577 6 756 4555 208 118 4 chr3 22495827 22496812 -137102971 + Lx5 LINE L1 5954 7050 0 6 756 432 0 0 0 chr3 22496949 22496997 -137102786 + (TTA)n Simple_repeat Simple_repeat 2 49 0 6 756 315 209 66 31 chr3 22496999 22497142 -137102641 + Lx7 LINE L1 7566 7692 -4 6 756 22 35 0 0 chr3 22497297 22497326 -137102457 + AT_rich Low_complexity Low_complexity 1 29 0 6 756 3361 70 2 0 chr3 22497347 22497775 -137102008 - L1_Mus1 LINE L1 0 6567 6139 6 756 994 321 60 27 chr3 22498079 22498562 -137101221 + L1MA4 LINE L1 5430 5928 -372 6 756 534 143 0 0 chr3 22498782 22498887 -137100896 + (CA)n Simple_repeat Simple_repeat 1 105 0 6 756 55 29 0 0 chr3 22498949 22499018 -137100765 + AT_rich Low_complexity Low_complexity 1 69 0 6 756 25 51 0 0 chr3 22499367 22499406 -137100377 + AT_rich Low_complexity Low_complexity 1 39 0 6 756 294 167 0 0 chr3 22499407 22499467 -137100316 + (TA)n Simple_repeat Simple_repeat 2 61 0 6 756 709 329 35 54 chr3 22499519 22499749 -137100034 - B4A SINE B4 -22 270 44 6 756 606 78 0 33 chr3 22499749 22499869 -137099914 - L1_Mus3 LINE L1 -6 6632 6517 6 756 709 329 35 54 chr3 22499869 22499898 -137099885 - B4A SINE B4 -249 43 16 6 756 330 248 38 8 chr3 22500021 22500162 -137099621 + L1M3 LINE L1 4158 4304 -1839 1 756 1929 200 16 13 chr3 22500334 22500714 -137099069 + RLTR11A2 LTR ERVK 1 381 -146 2 756 1685 42 0 5 chr3 22500763 22500980 -137098803 - L1Md_F2 LINE L1 0 6582 6367 3 756 712 129 45 0 chr3 22500984 22501116 -137098667 + RLTR11A2 LTR ERVK 390 527 0 2 756 317 333 37 0 chr3 22501213 22501321 -137098462 + MTEb LTR MaLR 251 362 -17 4 756 292 325 69 124 chr3 22503583 22503619 -137096164 - B3 SINE B2 0 216 187 5 756 261 0 0 0 chr3 22503619 22503648 -137096135 + (TC)n Simple_repeat Simple_repeat 2 30 0 6 756 299 325 69 124 chr3 22503648 22503829 -137095954 - B3A SINE B2 -30 186 11 5 756 7953 159 12 7 chr3 22503830 22505335 -137094448 - L1_Mus4 LINE L1 -333 5550 4038 7 756 6778 119 4 3 chr3 22505336 22506376 -137093407 + L1_Mus4 LINE L1 5589 6629 -7 7 756 208 250 40 0 chr3 22506507 22506583 -137093200 + CT-rich Low_complexity Low_complexity 2 80 0 8 756 307 286 35 23 chr3 22506638 22506724 -137093059 + ORR1E LTR MaLR 273 359 0 9 756 389 323 117 9 chr3 22507120 22507351 -137092432 + L1MD2 LINE L1 636 891 -5656 1 756 1486 237 64 135 chr3 22507580 22508238 -137091545 + RMER19C LTR ERVK 1 611 0 1 756 746 117 0 43 chr3 22508354 22508541 -137091242 + (TCTCTG)n Simple_repeat Simple_repeat 2 180 0 1 756 2127 184 31 20 chr3 22508561 22509009 -137090774 - RLTR11B LTR ERVK 0 453 1 1 756 370 341 100 4 chr3 22509190 22509522 -137090261 + L1MD2 LINE L1 5505 5865 -711 1 756 508 271 34 8 chr3 22509672 22509791 -137089992 - B3 SINE B2 -93 123 2 1 756 703 283 13 95 chr3 22509821 22510050 -137089733 - B3A SINE B2 0 216 1 1 756 38541 18 1 6 chr3 22510925 22517121 -137082662 - L1Md_A LINE L1 -1 6581 420 1 756 258 81 0 0 chr3 22517229 22517266 -137082517 + (TG)n Simple_repeat Simple_repeat 2 38 0 1 756 866 298 28 16 chr3 22517389 22517638 -137082145 - MTD LTR MaLR -155 264 13 1 756 1307 279 275 30 chr3 22517647 22518606 -137081177 - MTD-int LTR MaLR 0 1258 63 1 756 1089 302 43 38 chr3 22518639 22519056 -137080727 - MTD LTR MaLR 0 419 1 1 756 35158 33 4 7 chr3 22520309 22525889 -137073894 + L1Md_T LINE L1 28 5585 -298 2 756 8258 42 0 0 chr3 22525891 22526886 -137072897 + L1Md_T LINE L1 5588 6582 0 2 756 1583 239 31 33 chr3 22527634 22528054 -137071729 - MTD LTR MaLR 0 419 1 2 756 219 139 0 0 chr3 22528210 22528246 -137071537 + (TTTA)n Simple_repeat Simple_repeat 4 39 0 2 756 227 227 0 0 chr3 22528469 22528513 -137071270 + (TAA)n Simple_repeat Simple_repeat 2 45 0 2 756 213 39 0 0 chr3 22528903 22528929 -137070854 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 2 756 2223 61 3 33 chr3 22529855 22530158 -137069625 - L1_Mus1 LINE L1 0 6567 6274 2 756 207 105 26 0 chr3 22530732 22530770 -137069013 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 2 756 22 0 0 0 chr3 22532265 22532287 -137067496 + AT_rich Low_complexity Low_complexity 1 22 0 2 756 2337 251 115 34 chr3 22532290 22533087 -137066696 - Lx7 LINE L1 -2 7694 6833 2 756 1300 306 34 58 chr3 22533803 22534025 -137065758 + MER44B DNA MER2_type 6 236 -314 2 756 366 123 0 0 chr3 22534025 22534082 -137065701 + (TCCA)n Simple_repeat Simple_repeat 3 59 0 3 756 1300 306 34 58 chr3 22534082 22534394 -137065389 + MER44B DNA MER2_type 237 527 -23 2 756 183 42 0 0 chr3 22534445 22534469 -137065314 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 3 756 250 249 131 10 chr3 22534523 22534643 -137065140 + MIRb SINE MIR 41 175 -93 3 756 1069 268 78 24 chr3 22535212 22535545 -137064238 + ORR1E LTR MaLR 5 355 -4 3 756 1010 260 87 45 chr3 22535725 22536080 -137063703 + ORR1D2 LTR MaLR 1 370 0 3 756 21 0 0 0 chr3 22536602 22536623 -137063160 + AT_rich Low_complexity Low_complexity 1 21 0 3 756 3301 74 2 7 chr3 22536623 22537059 -137062724 - L1_Mus1 LINE L1 -1 6566 6133 3 756 1392 95 0 0 chr3 22537066 22537277 -137062506 + L1_Mm LINE L1 2683 2893 -2990 3 756 31 44 0 0 chr3 22538575 22538620 -137061163 + AT_rich Low_complexity Low_complexity 1 45 0 3 756 324 188 0 0 chr3 22539531 22539600 -137060183 - RLTR12B LTR ERVK -459 69 1 3 756 4470 144 32 4 chr3 22540025 22540913 -137058870 - Lx3C LINE L1 -1055 5921 5000 4 756 7352 67 2 5 chr3 22540912 22542524 -137057259 - L1Md_F2 LINE L1 -1 6581 4973 4 94 13381 131 2 62 chr3 22542522 22546221 -137053562 - L1Md_F2 LINE L1 0 6582 3125 4 757 4541 104 3 13 chr3 22546222 22546933 -137052850 - L1Md_F2 LINE L1 -895 4988 4285 4 757 19864 91 52 1 chr3 22546931 22551463 -137048320 - L1Md_T LINE L1 0 6582 1468 4 757 26 30 0 0 chr3 22551463 22551496 -137048287 + AT_rich Low_complexity Low_complexity 1 33 0 4 757 923 68 7 33 chr3 22551497 22551648 -137048135 - L1_Mus2 LINE L1 -1 6565 6419 4 757 35836 48 0 3 chr3 22551775 22558255 -137041528 - L1Md_T LINE L1 0 6585 29 4 757 6268 142 23 3 chr3 22558244 22559503 -137040280 - L1Md_F LINE L1 -4404 1479 169 4 757 1578 112 21 0 chr3 22559489 22559730 -137040053 - L1_Mur1 LINE L1 -867 5019 4774 4 757 2678 128 21 27 chr3 22559729 22560211 -137039572 + Lx3C LINE L1 5916 6394 -582 4 757 191 60 19 57 chr3 22560211 22560264 -137039519 + (CAAA)n Simple_repeat Simple_repeat 3 53 0 5 757 3353 126 36 11 chr3 22560266 22560798 -137038985 + Lx3C LINE L1 6381 6925 -51 4 757 495 280 90 7 chr3 22561592 22561736 -137038047 - RSINE1 SINE B4 -4 161 6 5 757 1432 250 50 13 chr3 22562566 22562954 -137036829 - MTD LTR MaLR -14 405 11 5 757 929 81 7 0 chr3 22563301 22563437 -137036346 + (TC)n Simple_repeat Simple_repeat 1 137 0 5 757 5569 47 0 2 chr3 22563773 22564412 -137035371 - L1Md_F3 LINE L1 -14 6570 5933 5 757 656 296 79 14 chr3 22564713 22564923 -137034860 + MT2A LTR ERVL 294 517 -16 5 757 1118 155 122 20 chr3 22564923 22565127 -137034656 + URR1A DNA MER1_type 1 225 -1 5 757 1467 203 37 134 chr3 22565728 22566049 -137033734 - RMER10B LTR ERVL 0 398 102 5 757 2027 149 34 12 chr3 22566049 22566369 -137033414 - ORR1A2 LTR MaLR 0 327 1 5 757 1467 203 37 134 chr3 22566369 22566479 -137033304 - RMER10B LTR ERVL -297 101 9 5 757 347 357 105 52 chr3 22567639 22567982 -137031801 + MTEa LTR MaLR 10 379 0 5 757 273 308 0 13 chr3 22568269 22568348 -137031435 - ID4 SINE ID 0 83 6 6 757 35 0 0 0 chr3 22568531 22568566 -137031217 + AT_rich Low_complexity Low_complexity 1 35 0 6 757 41515 13 0 6 chr3 22568607 22575000 -137024783 - L1Md_A LINE L1 0 6582 232 6 757 261 393 0 0 chr3 22575097 22575186 -137024597 - MLT1J LTR MaLR -327 185 97 6 757 22 0 0 0 chr3 22575766 22575788 -137023995 + AT_rich Low_complexity Low_complexity 1 22 0 6 757 978 261 20 0 chr3 22576750 22576949 -137022834 + B3 SINE B2 2 204 -12 6 757 683 335 51 51 chr3 22576991 22577218 -137022565 + Lx8 LINE L1 7051 7272 -201 6 757 1329 271 10 109 chr3 22577218 22577629 -137022154 + ORR1D2 LTR MaLR 1 370 0 6 757 683 335 51 51 chr3 22577629 22577816 -137021967 + Lx8 LINE L1 7273 7465 -8 6 757 947 284 99 40 chr3 22577825 22577963 -137021820 - Lx9 LINE L1 -3 7641 7509 6 757 416 105 0 13 chr3 22577963 22578040 -137021743 + (CA)n Simple_repeat Simple_repeat 2 77 0 6 757 947 284 99 40 chr3 22578040 22578397 -137021386 - Lx9 LINE L1 -136 7508 7118 6 757 730 271 61 36 chr3 22578440 22578743 -137021040 + L1_Mur3 LINE L1 4315 4655 -1488 7 757 530 301 7 59 chr3 22578806 22578958 -137020825 + RSINE1 SINE B4 4 147 -18 7 757 414 0 0 0 chr3 22578958 22579004 -137020779 + (TG)n Simple_repeat Simple_repeat 2 47 0 7 757 737 51 10 0 chr3 22579011 22579109 -137020674 + (GA)n Simple_repeat Simple_repeat 2 100 0 7 757 801 294 138 17 chr3 22579656 22579947 -137019836 + ORR1E LTR MaLR 23 348 -11 7 757 246 206 0 0 chr3 22580743 22580811 -137018972 + (TG)n Simple_repeat Simple_repeat 2 69 0 7 757 472 261 28 42 chr3 22581047 22581407 -137018376 + (CACAG)n Simple_repeat Simple_repeat 1 354 0 7 757 256 299 16 54 chr3 22581310 22581494 -137018289 + (CAGTA)n Simple_repeat Simple_repeat 1 177 0 7 757 373 185 111 0 chr3 22581847 22581928 -137017855 + MTE2b LTR MaLR 290 379 0 7 757 31 26 0 0 chr3 22583124 22583162 -137016621 + AT_rich Low_complexity Low_complexity 1 38 0 7 757 662 280 49 24 chr3 22583880 22584085 -137015698 - B3 SINE B2 -4 212 3 8 757 469 269 146 17 chr3 22584382 22584468 -137015315 - RMER30 DNA MER1_type 0 202 109 8 757 378 0 0 0 chr3 22584468 22584510 -137015273 + (GA)n Simple_repeat Simple_repeat 1 42 0 8 757 469 269 146 17 chr3 22584510 22584601 -137015182 - RMER30 DNA MER1_type -94 108 2 8 757 257 340 21 0 chr3 22584695 22584789 -137014994 + B3 SINE B2 3 98 -118 8 757 390 42 0 0 chr3 22584821 22584869 -137014914 + (CA)n Simple_repeat Simple_repeat 2 49 0 8 757 351 295 27 226 chr3 22584895 22585088 -137014695 - RMER20A LTR ERVK -23 604 450 8 757 636 14 0 0 chr3 22585088 22585161 -137014622 + (TGG)n Simple_repeat Simple_repeat 2 74 0 8 757 351 295 27 226 chr3 22585161 22585209 -137014574 - RMER20A LTR ERVK -178 449 426 8 757 1174 88 7 0 chr3 22585209 22585356 -137014427 - B1_Mus1 SINE Alu 0 148 1 8 757 426 278 57 113 chr3 22585356 22585755 -137014028 - RMER20A LTR ERVK -202 425 1 8 757 2089 38 0 0 chr3 22585877 22586113 -137013670 + L1Md_T LINE L1 6346 6581 -1 8 757 188 35 35 0 chr3 22586123 22586152 -137013631 + (TAAAA)n Simple_repeat Simple_repeat 4 33 0 8 757 279 319 165 24 chr3 22586161 22586325 -137013458 - MER5A DNA MER1_type -2 187 1 9 757 270 258 30 0 chr3 22586421 22586487 -137013296 - MIRb SINE MIR -73 195 128 9 757 341 288 89 22 chr3 22586485 22586620 -137013163 + L2c LINE L2 3243 3386 -1 9 757 483 305 64 29 chr3 22586848 22587009 -137012774 - Lx9 LINE L1 -15 7629 7463 9 757 561 30 0 0 chr3 22587009 22587076 -137012707 + (TCTA)n Simple_repeat Simple_repeat 4 70 0 9 757 483 305 64 29 chr3 22587076 22587225 -137012558 - Lx9 LINE L1 -182 7462 7308 9 757 1041 273 140 52 chr3 22587231 22587303 -137012480 - Tigger6a DNA MER2_type -2 1081 1012 9 757 2352 160 11 35 chr3 22587303 22587679 -137012104 - ORR1B2 LTR MaLR 0 367 1 9 757 1041 273 140 52 chr3 22587679 22588015 -137011768 - Tigger6a DNA MER2_type -72 1011 622 9 757 744 71 0 0 chr3 22588015 22588114 -137011669 + (TCCC)n Simple_repeat Simple_repeat 4 102 0 9 757 1041 273 140 52 chr3 22588114 22588284 -137011499 - Tigger6a DNA MER2_type -462 621 451 9 757 661 293 48 99 chr3 22588282 22588676 -137011107 - Tigger6b DNA MER2_type -707 890 517 9 757 549 72 36 0 chr3 22588703 22588786 -137010997 - B2_Mm1t SINE B2 -6 187 102 9 757 35626 73 1 24 chr3 22588803 22595023 -137004760 - L1Md_F2 LINE L1 0 6582 505 1 757 457 314 78 105 chr3 22595059 22595387 -137004396 - Tigger6b DNA MER2_type -1143 454 133 9 757 1695 139 40 7 chr3 22595387 22595662 -137004121 - Lx LINE L1 -4 6650 6367 1 757 457 314 78 105 chr3 22595662 22595742 -137004041 - Tigger6b DNA MER2_type -1465 132 57 9 757 232 265 59 0 chr3 22596074 22596142 -137003641 + MTE-int LTR MaLR 561 632 -948 1 757 225 287 23 0 chr3 22596259 22596346 -137003437 + A-rich Low_complexity Low_complexity 1 89 0 1 757 298 356 91 0 chr3 22596536 22596668 -137003115 + Lx8 LINE L1 7032 7175 -298 1 757 407 278 74 0 chr3 22596691 22596799 -137002984 + RMER15 LTR ERVL 371 486 -89 1 757 198 0 0 0 chr3 22596801 22596823 -137002960 + (TTTTG)n Simple_repeat Simple_repeat 4 25 0 1 757 762 199 13 40 chr3 22597705 22597857 -137001926 + B1_Mus1 SINE Alu 1 148 0 1 757 186 43 0 0 chr3 22597918 22597941 -137001842 + (CCA)n Simple_repeat Simple_repeat 3 25 0 1 757 1017 212 93 21 chr3 22599650 22599886 -136999897 + RMER10B LTR ERVL 1 253 -145 1 757 5576 51 0 0 chr3 22600364 22600988 -136998795 + RLTR1 LTR ERV1 1 624 0 1 757 2067 209 96 21 chr3 22600990 22601551 -136998232 + MMERGLN-int LTR ERV1 3 605 -6951 1 757 3418 41 5 0 chr3 22601551 22601939 -136997844 - RLTR10 LTR ERVK 0 390 1 1 757 11338 94 57 59 chr3 22601941 22603896 -136995887 - RLTR10-int LTR ERVK -3 1984 34 1 757 3397 42 5 0 chr3 22603904 22604290 -136995493 - RLTR10 LTR ERVK -2 388 1 1 757 307 91 0 22 chr3 22604290 22604335 -136995448 + RLTR1B-int LTR ERV1 428 471 -2828 1 757 890 186 30 95 chr3 22604651 22604913 -136994870 + RLTR1B-int LTR ERV1 535 779 -2520 1 757 369 194 9 114 chr3 22605014 22605119 -136994664 + RLTR1B-int LTR ERV1 1068 1161 -2537 1 757 12219 101 126 127 chr3 22605192 22605618 -136994165 + RLTR1B-int LTR ERV1 783 1138 -2161 1 757 519 17 0 0 chr3 22605618 22605678 -136994105 + (GA)n Simple_repeat Simple_repeat 1 60 0 1 757 12219 101 126 127 chr3 22605678 22607763 -136992020 + RLTR1B-int LTR ERV1 1139 3290 -9 1 757 5371 60 7 0 chr3 22607771 22608391 -136991392 + RLTR1 LTR ERV1 1 624 0 1 757 343 167 0 53 chr3 22608391 22608456 -136991327 + RLTR18B LTR ERVK 90 152 -464 1 757 2042 217 59 35 chr3 22608456 22608540 -136991243 - RLTR20A1 LTR ERVK 0 551 465 1 757 414 0 0 0 chr3 22608540 22608586 -136991197 + (CA)n Simple_repeat Simple_repeat 2 47 0 1 757 2042 217 59 35 chr3 22608586 22609012 -136990771 - RLTR20A1 LTR ERVK -87 464 29 1 757 239 200 0 22 chr3 22609027 22609073 -136990710 + RLTR18B LTR ERVK 147 191 -425 1 757 375 328 47 8 chr3 22609309 22609438 -136990345 + RLTR18B LTR ERVK 379 512 0 1 757 285 236 233 41 chr3 22609592 22609658 -136990125 + B4 SINE B4 2 73 -219 1 757 369 0 0 0 chr3 22609658 22609699 -136990084 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 757 285 236 233 41 chr3 22609699 22609778 -136990005 + B4 SINE B4 74 175 -117 1 757 281 293 65 43 chr3 22610148 22610287 -136989496 - RLTR23 LTR ERV1 -1 429 288 1 757 22 0 0 0 chr3 22610808 22610830 -136988953 + AT_rich Low_complexity Low_complexity 1 22 0 1 757 943 224 20 60 chr3 22610876 22611333 -136988450 - RMER10A LTR ERVL 0 398 1 1 757 369 34 51 0 chr3 22612390 22612449 -136987334 + (CA)n Simple_repeat Simple_repeat 1 62 0 1 757 400 192 10 10 chr3 22612449 22612549 -136987234 + GA-rich Low_complexity Low_complexity 1 100 0 1 757 208 378 71 0 chr3 22612560 22612658 -136987125 + MIR SINE MIR 24 128 -134 1 757 36758 6 1 0 chr3 22614228 22619806 -136979977 + L1Md_A LINE L1 7 5586 -297 1 757 9056 2 0 0 chr3 22619806 22620801 -136978982 + L1Md_A LINE L1 5587 6581 -1 1 757 402 184 0 35 chr3 22621281 22621394 -136978389 + CT-rich Low_complexity Low_complexity 1 109 0 1 757 432 331 35 0 chr3 22621733 22621875 -136977908 - B1F1 SINE Alu 0 149 3 1 757 1847 118 14 0 chr3 22622088 22622368 -136977415 - Lx3_Mus LINE L1 -2 7007 6724 1 757 245 27 54 0 chr3 22622374 22622411 -136977372 + (TTTTTG)n Simple_repeat Simple_repeat 4 42 0 1 757 1143 75 7 0 chr3 22622411 22622557 -136977226 - B1_Mm SINE Alu 0 147 1 1 757 915 87 1 9 chr3 22622576 22622727 -136977056 - Lx3_Mus LINE L1 -1153 5905 5761 1 757 285 55 18 53 chr3 22622700 22622757 -136977026 - L1_Mus2 LINE L1 0 6566 6512 1 757 207 152 0 0 chr3 22622764 22622810 -136976973 + T-rich Low_complexity Low_complexity 1 46 0 1 757 973 79 28 7 chr3 22622813 22622954 -136976829 - B1_Mus1 SINE Alu 0 148 5 1 757 39246 10 0 1 chr3 22622965 22630170 -136969613 - L1Md_A LINE L1 0 6582 1 1 757 5411 50 1 16 chr3 22630159 22631174 -136968609 - L1Md_A LINE L1 -5972 752 1 1 757 17892 36 3 12 chr3 22631173 22634301 -136965482 - L1Md_A LINE L1 -2422 3461 368 1 757 195 139 0 0 chr3 22634438 22634474 -136965309 + (CATAA)n Simple_repeat Simple_repeat 4 39 0 1 757 22 0 0 0 chr3 22635245 22635267 -136964516 + AT_rich Low_complexity Low_complexity 1 22 0 1 757 214 105 105 0 chr3 22635272 22635310 -136964473 - B3 SINE B2 -173 43 2 1 757 1144 216 232 0 chr3 22636288 22636701 -136963082 - Lx9 LINE L1 -8 7636 7128 1 757 282 230 23 0 chr3 22637530 22637617 -136962166 + (TCTG)n Simple_repeat Simple_repeat 4 92 0 1 757 577 270 17 0 chr3 22638472 22638646 -136961137 + L1M2 LINE L1 5347 5523 -777 1 757 1020 253 97 20 chr3 22640517 22640819 -136958964 - RLTR20B3 LTR ERVK -42 535 240 1 757 807 246 67 40 chr3 22640798 22641104 -136958679 - RLTR20B3 LTR ERVK -242 335 1 1 757 202 364 263 35 chr3 22641499 22641934 -136957849 - L2 LINE L2 -905 2514 1981 1 757 1703 179 20 116 chr3 22642812 22643216 -136956567 - ORR1B2 LTR MaLR -2 365 1 1 757 221 197 16 0 chr3 22643415 22643476 -136956307 + CT-rich Low_complexity Low_complexity 4 65 0 1 757 553 304 72 5 chr3 22643501 22643709 -136956074 - ID_B1 SINE B4 -1 223 2 1 757 31 26 0 0 chr3 22645508 22645546 -136954237 + AT_rich Low_complexity Low_complexity 1 38 0 1 757 1588 236 16 21 chr3 22645628 22646122 -136953661 + L1VL4 LINE L1 512 987 -5573 1 757 8036 115 27 15 chr3 22646128 22648239 -136951544 - L1_Mus2 LINE L1 0 6566 4446 1 757 432 97 0 0 chr3 22648239 22648301 -136951482 + (TC)n Simple_repeat Simple_repeat 2 63 0 1 757 4785 93 18 6 chr3 22648344 22649017 -136950766 + L1_Mus3 LINE L1 5952 6632 -6 1 757 668 253 151 32 chr3 22649036 22649408 -136950375 - L1MD LINE L1 -1550 4596 4181 1 757 3622 136 23 3 chr3 22649693 22650300 -136949483 - Lx3C LINE L1 -1 6975 6357 1 757 8100 24 1 0 chr3 22650321 22651993 -136947790 - L1Md_T LINE L1 0 6582 4910 1 757 2478 140 0 0 chr3 22652131 22652532 -136947251 + L1_Mm LINE L1 5453 5853 -30 1 757 34424 37 3 8 chr3 22652556 22657751 -136942032 + L1Md_T LINE L1 422 5586 -297 1 757 8446 36 0 0 chr3 22657751 22658745 -136941038 + L1Md_T LINE L1 5587 6580 -2 1 757 191 114 23 0 chr3 22658758 22658802 -136940981 + (CAAAAA)n Simple_repeat Simple_repeat 3 47 0 1 757 5665 166 31 24 chr3 22658804 22659930 -136939853 + Lx2 LINE L1 5862 6995 -2 1 757 535 304 64 12 chr3 22660026 22660199 -136939584 + B3A SINE B2 1 182 -16 1 757 1138 282 45 16 chr3 22660566 22660948 -136938835 + RMER5 LTR ERV1 112 504 -30 1 757 570 314 10 5 chr3 22660998 22661203 -136938580 + Lx6 LINE L1 7244 7449 -11 1 757 2352 113 8 11 chr3 22661521 22661886 -136937897 - RLTR13D2 LTR ERVK 0 1023 660 1 757 2344 114 29 3 chr3 22661882 22662226 -136937557 - RLTR13D2 LTR ERVK -670 353 1 1 757 865 258 25 101 chr3 22662262 22662716 -136937067 + RLTR11B LTR ERVK 1 412 -29 1 757 24 77 0 0 chr3 22663682 22663734 -136936049 + AT_rich Low_complexity Low_complexity 1 52 0 1 757 258 244 85 23 chr3 22664038 22664168 -136935615 + L1M2 LINE L1 5365 5502 -789 1 757 291 114 0 0 chr3 22664243 22664287 -136935496 + (CAA)n Simple_repeat Simple_repeat 1 44 0 1 757 23 78 0 0 chr3 22664522 22664573 -136935210 + AT_rich Low_complexity Low_complexity 1 51 0 1 757 285 305 101 41 chr3 22666356 22666603 -136933180 + L1M5 LINE L1 5504 5765 -475 1 757 605 331 45 15 chr3 22667861 22668128 -136931655 + B4 SINE B4 2 276 -16 1 757 1450 209 104 80 chr3 22668189 22668564 -136931219 + ORR1B1 LTR MaLR 3 386 -8 1 757 459 0 0 0 chr3 22668565 22668616 -136931167 + (CA)n Simple_repeat Simple_repeat 2 52 0 1 757 341 82 34 45 chr3 22668619 22668708 -136931075 + (CAGAGA)n Simple_repeat Simple_repeat 2 89 0 1 757 33 43 0 0 chr3 22669467 22669514 -136930269 + AT_rich Low_complexity Low_complexity 1 47 0 1 757 2215 55 0 0 chr3 22669522 22669793 -136929990 - L1_Mus1 LINE L1 -689 5878 5608 1 757 1006 58 7 0 chr3 22669793 22669932 -136929851 + L1_Mus1 LINE L1 6427 6566 -1 1 757 6695 92 36 0 chr3 22670210 22671732 -136928051 - L1_Mus1 LINE L1 0 6567 4991 1 757 4729 75 0 9 chr3 22671747 22672383 -136927400 - L1Md_F2 LINE L1 0 6582 5953 1 757 247 196 20 0 chr3 22672383 22672434 -136927349 + L1_Mus4 LINE L1 5669 5720 -916 1 757 9334 108 33 0 chr3 22672417 22674569 -136925214 - L1Md_F LINE L1 -3300 2583 360 1 94 20517 129 6 43 chr3 22674569 22678168 -136921615 - L1_Mus1 LINE L1 -884 4999 1534 1 758 902 135 88 75 chr3 22678219 22678459 -136921324 + RMER3D-int LTR ERVK 1919 2161 -681 1 758 258 276 0 0 chr3 22678516 22678574 -136921209 - RMER1B Other Other -773 293 236 1 758 416 298 17 26 chr3 22678574 22678691 -136921092 - RSINE1 SINE B4 -46 119 4 1 758 375 23 0 0 chr3 22679106 22679150 -136920633 + (CA)n Simple_repeat Simple_repeat 1 44 0 1 758 414 0 0 0 chr3 22679150 22679195 -136920588 + (TA)n Simple_repeat Simple_repeat 2 47 0 1 758 1916 194 33 0 chr3 22679222 22679588 -136920195 - ORR1C1 LTR MaLR 0 378 1 1 758 3395 180 83 10 chr3 22679588 22680263 -136919520 - ORR1C1-int LTR MaLR 0 1509 786 1 758 1708 178 20 0 chr3 22680275 22680567 -136919216 + ORR1A4 LTR MaLR 1 298 -31 1 758 7681 182 50 67 chr3 22680567 22682306 -136917477 + ORR1A4-int LTR MaLR 1 1709 -254 1 758 211 113 19 19 chr3 22682375 22682429 -136917354 + T-rich Low_complexity Low_complexity 2 55 0 1 758 8238 44 0 1 chr3 22682432 22683522 -136916261 - L1Md_F2 LINE L1 -1 6581 5493 1 758 6313 48 0 0 chr3 22683520 22684298 -136915485 + L1Md_F2 LINE L1 4697 5474 -409 1 758 4281 129 11 11 chr3 22684300 22684967 -136914816 - Lx LINE L1 -15 6639 5973 1 758 1027 138 337 0 chr3 22684969 22685165 -136914618 + ORR1A4-int LTR MaLR 1695 1956 -7 1 758 1656 163 15 78 chr3 22685188 22685521 -136914262 + ORR1A4 LTR MaLR 15 326 0 1 758 3151 204 8 11 chr3 22685541 22686162 -136913621 - ORR1C1-int LTR MaLR -887 622 4 1 758 1686 225 19 3 chr3 22686165 22686535 -136913248 - ORR1C1 LTR MaLR 0 378 3 1 758 344 276 215 40 chr3 22686564 22686862 -136912921 - L1MCa LINE L1 -5134 1374 1025 1 758 360 291 80 20 chr3 22687787 22687938 -136911845 + MLT1D LTR MaLR 342 501 -4 1 758 505 152 20 20 chr3 22688587 22688688 -136911095 - L1_Mm LINE L1 -1170 4713 4613 1 758 3364 83 23 52 chr3 22688688 22688911 -136910872 + L1_Mus2 LINE L1 6063 6283 -283 1 758 3948 178 52 65 chr3 22688911 22689907 -136909876 - RLTR13C1 LTR ERVK 0 983 1 1 758 3364 83 23 52 chr3 22689907 22690202 -136909581 + L1_Mus2 LINE L1 6284 6566 0 1 758 314 121 15 0 chr3 22690625 22690691 -136909092 + (CATA)n Simple_repeat Simple_repeat 1 67 0 1 758 1042 295 92 44 chr3 22691329 22692197 -136907586 - L1_Rod LINE L1 -565 5726 4802 1 758 229 271 98 0 chr3 22692423 22692497 -136907286 + MIR SINE MIR 116 215 -53 2 758 331 284 178 17 chr3 22692828 22692946 -136906837 + B3A SINE B2 12 148 -50 2 758 438 36 0 0 chr3 22692947 22693003 -136906780 + (CA)n Simple_repeat Simple_repeat 2 57 0 2 758 1219 275 20 54 chr3 22693087 22693440 -136906343 + MTE2a LTR MaLR 10 350 -29 2 758 354 385 32 13 chr3 22693823 22693981 -136905802 - ID_B1 SINE B4 -55 169 9 2 758 375 336 15 0 chr3 22693991 22694125 -136905658 - B1F2 SINE Alu -10 139 4 2 758 243 210 9 57 chr3 22694133 22694239 -136905544 + (TTATA)n Simple_repeat Simple_repeat 4 104 0 2 758 21 0 0 0 chr3 22694474 22694495 -136905288 + AT_rich Low_complexity Low_complexity 1 21 0 2 758 291 93 0 0 chr3 22695390 22695433 -136904350 + (TG)n Simple_repeat Simple_repeat 2 44 0 2 758 2387 268 39 20 chr3 22695543 22696289 -136903494 + Lx7 LINE L1 5867 6626 -1070 2 758 458 99 0 0 chr3 22696337 22696408 -136903375 + MusHAL1 LINE L1 1359 1429 -1283 2 758 8008 47 2 2 chr3 22696418 22697628 -136902155 - L1Md_F2 LINE L1 -15 6567 5357 2 758 15597 173 28 26 chr3 22697619 22698483 -136901300 + L1_Mur2 LINE L1 2621 3460 -2417 2 758 180 0 0 0 chr3 22698483 22698503 -136901280 + (CAA)n Simple_repeat Simple_repeat 2 21 0 2 758 15597 173 28 26 chr3 22698503 22700482 -136899301 + L1_Mur2 LINE L1 3461 5439 -438 2 758 431 0 37 0 chr3 22700482 22700536 -136899247 + (CAAAA)n Simple_repeat Simple_repeat 3 58 0 2 758 15597 173 28 26 chr3 22700536 22700898 -136898885 + L1_Mur2 LINE L1 5440 5835 -42 2 758 25156 134 28 3 chr3 22700917 22703261 -136896522 - L1_Mus3 LINE L1 -15 6623 4199 2 758 565 49 0 24 chr3 22703261 22703344 -136896439 + (TA)n Simple_repeat Simple_repeat 1 81 0 2 758 25156 155 29 5 chr3 22703344 22704052 -136895731 - L1_Mus3 LINE L1 -1685 4198 3494 2 758 261 0 0 0 chr3 22704052 22704081 -136895702 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 2 758 25156 155 29 5 chr3 22704081 22706205 -136893578 - L1_Mus3 LINE L1 -2390 3493 1308 2 758 2609 123 5 14 chr3 22706205 22706618 -136893165 + RLTR9E LTR ERVK 1 409 0 2 758 25156 175 83 16 chr3 22706618 22707026 -136892757 - L1_Mus3 LINE L1 -4576 1307 836 2 758 3557 68 2 125 chr3 22707026 22707610 -136892173 + RLTR1B LTR ERV1 1 512 0 2 758 4004 181 102 20 chr3 22707610 22708018 -136891765 - L1_Mus3 LINE L1 -5799 835 413 2 758 5519 190 34 20 chr3 22708021 22709173 -136890610 + Lx2B LINE L1 5828 6995 -5 2 758 576 280 14 27 chr3 22709896 22710043 -136889740 + B3A SINE B2 1 145 -53 2 758 684 24 0 0 chr3 22710086 22710168 -136889615 + (CA)n Simple_repeat Simple_repeat 2 83 0 2 758 1564 214 80 38 chr3 22710221 22710682 -136889101 + RMER19B LTR ERVK 137 664 -238 2 758 512 303 68 89 chr3 22710729 22711055 -136888728 - LTR37A LTR ERV1 -91 335 17 2 758 405 0 0 0 chr3 22711954 22711999 -136887784 + (TA)n Simple_repeat Simple_repeat 1 45 0 2 758 8002 164 18 21 chr3 22712193 22713615 -136886168 - Lx4A LINE L1 -9 7049 5632 2 758 725 273 23 64 chr3 22713658 22713877 -136885906 + ORR1E LTR MaLR 22 231 -128 2 758 696 290 47 31 chr3 22713892 22714084 -136885699 - B3A SINE B2 -1 197 3 2 758 2120 78 3 0 chr3 22715412 22715694 -136884089 - L1_Mus1 LINE L1 0 6567 6285 2 758 563 226 0 0 chr3 22715694 22715809 -136883974 - Lx5 LINE L1 -1271 5779 5665 2 758 405 373 60 28 chr3 22715896 22716111 -136883672 + B4A SINE B4 1 222 -70 2 758 230 136 0 22 chr3 22716353 22716392 -136883391 + GA-rich Low_complexity Low_complexity 3 41 0 2 758 243 88 0 0 chr3 22716392 22716426 -136883357 + (CAA)n Simple_repeat Simple_repeat 3 36 0 2 758 482 336 68 40 chr3 22716998 22717246 -136882537 - B4A SINE B4 -1 291 37 2 758 573 310 143 29 chr3 22717302 22717511 -136882272 - B4A SINE B4 -59 233 1 2 758 6319 52 0 12 chr3 22717736 22718536 -136881247 + L1Md_F2 LINE L1 5793 6582 0 2 758 575 285 48 16 chr3 22721044 22721220 -136878563 - B3 SINE B2 -17 178 1 2 758 446 333 7 0 chr3 22721758 22721905 -136877878 - B1F SINE Alu 0 149 2 2 758 396 0 0 0 chr3 22722822 22722866 -136876917 + (TA)n Simple_repeat Simple_repeat 2 45 0 2 758 672 267 123 65 chr3 22723149 22723425 -136876358 + B4A SINE B4 1 292 0 2 758 4772 151 80 13 chr3 22723573 22724499 -136875284 + Lx3B LINE L1 5985 6972 -1 2 758 21 0 0 0 chr3 22724502 22724523 -136875260 + AT_rich Low_complexity Low_complexity 1 21 0 2 758 397 351 40 7 chr3 22724562 22724704 -136875079 + MLT2D LTR ERVL 1 147 -267 2 758 652 282 121 11 chr3 22724704 22724933 -136874850 + ORR1B1 LTR MaLR 1 281 -103 2 758 1622 156 83 3 chr3 22724933 22725235 -136874548 + ORR1B1 LTR MaLR 1 326 -68 2 758 270 193 0 66 chr3 22725247 22725308 -136874475 + ORR1D1 LTR MaLR 260 316 -58 2 758 3036 61 13 8 chr3 22726190 22726584 -136873199 + MTA_Mm LTR MaLR 1 396 0 2 758 305 329 25 13 chr3 22726588 22726745 -136873038 + (TATATG)n Simple_repeat Simple_repeat 5 163 0 2 758 481 323 86 60 chr3 22726757 22726937 -136872846 - B4A SINE B4 -6 286 98 2 758 492 62 0 0 chr3 22726937 22727001 -136872782 + (TG)n Simple_repeat Simple_repeat 2 65 0 2 758 481 323 86 60 chr3 22727001 22727087 -136872696 - B4A SINE B4 -195 97 13 2 758 6598 111 35 28 chr3 22727302 22728579 -136871204 - L1_Mus2 LINE L1 0 6566 5297 2 758 3809 77 0 10 chr3 22728579 22729093 -136870690 - L1Md_F2 LINE L1 -11 6571 6063 2 758 6598 133 4 51 chr3 22729093 22729617 -136870166 - L1_Mus2 LINE L1 -587 5296 4795 2 758 234 0 0 0 chr3 22729626 22729652 -136870131 + (TTAA)n Simple_repeat Simple_repeat 3 28 0 2 758 25931 115 48 19 chr3 22729667 22733352 -136866431 - L1Md_F2 LINE L1 -11 6571 2634 2 758 2993 40 8 0 chr3 22733352 22733706 -136866077 + IAPEY2_LTR LTR ERVK 1 357 0 2 758 25931 125 55 21 chr3 22733706 22735466 -136864317 - L1Md_F2 LINE L1 -3250 2633 949 2 758 737 275 123 18 chr3 22735464 22735749 -136864034 - L1Md_F2 LINE L1 -5780 836 522 2 758 716 271 14 86 chr3 22736013 22736235 -136863548 + B3 SINE B2 11 216 0 2 758 296 371 24 16 chr3 22736258 22736384 -136863399 + PB1 SINE Alu 1 127 0 2 758 22 70 0 0 chr3 22736736 22736779 -136863004 + AT_rich Low_complexity Low_complexity 1 43 0 2 758 928 167 40 0 chr3 22738347 22738521 -136861262 + B2_Mm2 SINE B2 1 181 -14 2 758 304 327 65 54 chr3 22738575 22738743 -136861040 - MER58A DNA MER1_type -4 220 51 2 758 328 335 98 51 chr3 22738786 22739000 -136860783 - RMER15 LTR ERVL -52 523 300 2 758 240 263 63 71 chr3 22739042 22739169 -136860614 - RMER15 LTR ERVL -445 130 5 2 758 2090 223 55 32 chr3 22739763 22740236 -136859547 + RLTR12A LTR ERVK 85 568 0 2 758 683 187 212 47 chr3 22740346 22740477 -136859306 - Lx9 LINE L1 -6 7638 7475 2 758 369 0 0 0 chr3 22740477 22740518 -136859265 + (TG)n Simple_repeat Simple_repeat 2 42 0 2 758 683 187 212 47 chr3 22740518 22740622 -136859161 - Lx9 LINE L1 -170 7474 7364 2 758 669 13 0 0 chr3 22740773 22740851 -136858932 + (TC)n Simple_repeat Simple_repeat 1 78 0 2 758 210 37 0 0 chr3 22740851 22740877 -136858906 + (CA)n Simple_repeat Simple_repeat 1 27 0 2 758 682 293 87 41 chr3 22742502 22743308 -136856475 - L1MD3 LINE L1 -2047 5948 5099 2 758 510 70 0 0 chr3 22743464 22743535 -136856248 + (CA)n Simple_repeat Simple_repeat 2 72 0 2 758 1218 32 0 0 chr3 22743662 22743817 -136855966 - ORR1A1 LTR MaLR -191 155 1 2 758 4530 66 19 6 chr3 22743817 22744436 -136855347 - ORR1A1-int LTR MaLR 0 1792 1166 2 758 7109 92 9 69 chr3 22744436 22745592 -136854191 + MT-int LTR MaLR 2 1087 -11 2 758 228 35 0 0 chr3 22745704 22745733 -136854050 + (CAA)n Simple_repeat Simple_repeat 1 29 0 2 758 513 0 0 0 chr3 22746285 22746342 -136853441 + (GA)n Simple_repeat Simple_repeat 2 58 0 2 758 398 244 52 30 chr3 22747373 22747508 -136852275 - Lx7 LINE L1 0 7696 7559 2 758 25 0 0 0 chr3 22747576 22747601 -136852182 + AT_rich Low_complexity Low_complexity 1 25 0 2 758 351 0 0 0 chr3 22747618 22747657 -136852126 + (TG)n Simple_repeat Simple_repeat 1 39 0 2 758 1029 261 162 116 chr3 22747787 22748149 -136851634 + MTD LTR MaLR 1 378 -1 2 758 1233 150 5 27 chr3 22748170 22748389 -136851394 + Lx5 LINE L1 5491 5704 -173 2 758 2052 199 62 63 chr3 22748390 22748894 -136850889 + RLTR31A_Mm LTR ERVK 1 503 -81 2 758 259 167 0 36 chr3 22748873 22748929 -136850854 + RLTR17 LTR ERVK 639 692 0 2 758 3523 229 31 44 chr3 22748929 22750194 -136849589 + Lx5 LINE L1 5706 7049 -1 2 758 606 174 52 46 chr3 22751208 22751341 -136848442 - Lx5 LINE L1 -368 6608 6468 2 758 252 0 0 0 chr3 22752853 22752881 -136846902 + (TA)n Simple_repeat Simple_repeat 1 28 0 2 758 198 0 0 0 chr3 22753017 22753039 -136846744 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 2 758 355 268 47 47 chr3 22753042 22753171 -136846612 - B1F1 SINE Alu -16 133 5 2 758 216 176 38 38 chr3 22753603 22753656 -136846127 + (TATG)n Simple_repeat Simple_repeat 2 54 0 2 758 24 0 0 0 chr3 22754639 22754663 -136845120 + AT_rich Low_complexity Low_complexity 1 24 0 2 758 357 332 143 5 chr3 22755779 22756003 -136843780 - L3 LINE CR1 -17 4472 4218 2 758 1051 190 54 0 chr3 22756333 22756554 -136843229 + Lx2A1 LINE L1 6767 6999 -9 2 758 1097 333 68 35 chr3 22756587 22757399 -136842384 + L1MA5 LINE L1 5459 6297 -3 2 758 266 250 0 16 chr3 22757475 22757536 -136842247 + ID SINE ID 2 61 -163 2 758 1154 197 62 12 chr3 22757548 22757790 -136841993 + MTC LTR MaLR 2 255 -166 2 758 21 57 0 0 chr3 22758371 22758406 -136841377 + AT_rich Low_complexity Low_complexity 1 35 0 2 758 210 171 0 0 chr3 22758445 22758480 -136841303 + (TTA)n Simple_repeat Simple_repeat 3 37 0 2 758 1362 56 0 0 chr3 22758768 22758948 -136840835 - L1Md_F2 LINE L1 -1 6581 6402 2 758 223 408 56 0 chr3 22759671 22759796 -136839987 + L4 LINE RTE 1116 1247 -782 2 758 231 324 83 56 chr3 22759796 22759976 -136839807 - MLT2B5 LTR ERVL -295 306 122 2 758 1220 243 4 0 chr3 22760050 22760289 -136839494 - Lx5 LINE L1 -688 6362 6123 2 758 497 292 88 15 chr3 22760291 22760496 -136839287 + ORR1D2 LTR MaLR 149 368 -2 2 758 350 187 67 0 chr3 22760501 22760576 -136839207 + MTEb LTR MaLR 300 379 0 2 758 644 296 44 0 chr3 22761181 22761384 -136838399 - B3 SINE B2 0 216 5 2 758 802 218 48 4 chr3 22763838 22763944 -136835839 - L1_Mur3 LINE L1 -2757 3123 3012 2 758 3205 124 86 4 chr3 22763944 22764477 -136835306 - Lx3_Mus LINE L1 0 7009 6433 3 758 802 218 48 4 chr3 22764477 22764600 -136835183 - L1_Mur3 LINE L1 -2869 3011 2885 2 758 506 296 21 21 chr3 22764598 22764788 -136834995 + Lx6 LINE L1 5785 5974 -1722 3 758 29 47 0 0 chr3 22764852 22764895 -136834888 + AT_rich Low_complexity Low_complexity 1 43 0 3 758 344 359 56 70 chr3 22765109 22765627 -136834156 - L1M5 LINE L1 -465 5775 5265 3 758 2138 115 45 151 chr3 22765683 22766214 -136833569 - IAPLTR2_Mm LTR ERVK 0 475 1 3 758 6878 35 2 17 chr3 22766216 22767057 -136832726 - IAPEz-int LTR ERVK -2 6479 5651 3 758 2610 79 0 3 chr3 22767050 22767393 -136832390 - IAPEz-int LTR ERVK -4781 1700 1359 3 758 3581 58 1 16 chr3 22767393 22767971 -136831812 - IAPEz-int LTR ERVK -5819 662 168 3 758 245 309 0 0 chr3 22767971 22768026 -136831757 - RLTR27 LTR ERVK -34 275 221 3 758 1005 66 9 201 chr3 22768026 22768255 -136831528 - IAPEz-int LTR ERVK -6288 193 9 3 758 2138 115 45 151 chr3 22768256 22768787 -136830996 - IAPLTR2_Mm LTR ERVK 0 475 1 3 758 412 285 126 0 chr3 22769142 22769293 -136830490 - Lx8 LINE L1 -359 7114 6945 3 758 204 122 0 0 chr3 22769731 22769772 -136830011 + (T)n Simple_repeat Simple_repeat 1 41 0 3 758 324 351 118 24 chr3 22769954 22770123 -136829660 + MTEa LTR MaLR 195 379 0 3 758 507 297 28 0 chr3 22770170 22770315 -136829468 + B1_Mur2 SINE Alu 1 149 0 3 758 22 35 0 0 chr3 22770542 22770571 -136829212 + AT_rich Low_complexity Low_complexity 1 29 0 3 758 213 39 0 0 chr3 22770712 22770738 -136829045 + (TATATG)n Simple_repeat Simple_repeat 2 27 0 3 758 906 190 6 0 chr3 22770826 22771005 -136828778 + L1_Mur3 LINE L1 5203 5382 -498 3 758 1902 233 57 35 chr3 22771007 22771539 -136828244 + Lx6 LINE L1 6725 7534 -162 3 758 1232 242 58 56 chr3 22771937 22772004 -136827779 - Lx7 LINE L1 -199 7497 7439 3 758 321 82 0 0 chr3 22772004 22772053 -136827730 + (CA)n Simple_repeat Simple_repeat 2 50 0 3 758 1232 242 58 56 chr3 22772053 22772397 -136827386 - Lx7 LINE L1 -258 7438 7085 3 758 2107 250 136 38 chr3 22772398 22772900 -136826883 + Lx7 LINE L1 6328 6891 -805 3 758 750 32 0 0 chr3 22772900 22772993 -136826790 + (GA)n Simple_repeat Simple_repeat 1 93 0 3 758 2107 250 136 38 chr3 22772993 22773181 -136826602 + Lx7 LINE L1 6892 7085 -611 3 758 724 300 72 46 chr3 22773287 22773757 -136826026 - L1M4 LINE L1 -5978 564 88 3 758 578 39 13 0 chr3 22773757 22773834 -136825949 + (TC)n Simple_repeat Simple_repeat 1 78 0 3 758 724 300 72 46 chr3 22773834 22773908 -136825875 - L1M4 LINE L1 -6455 87 6 3 758 345 278 30 162 chr3 22773916 22774170 -136825613 - B3A SINE B2 -1 215 2 3 758 180 111 0 0 chr3 22774899 22774926 -136824857 + (GGGAA)n Simple_repeat Simple_repeat 3 29 0 3 758 273 109 0 0 chr3 22774994 22775040 -136824743 + (TTTTG)n Simple_repeat Simple_repeat 2 47 0 3 758 738 233 33 16 chr3 22775143 22775326 -136824457 - RLTR28B LTR ERVL -295 186 1 3 758 807 337 115 6 chr3 22775542 22775873 -136823910 + MTEa LTR MaLR 1 367 -12 3 758 579 337 30 57 chr3 22776359 22776658 -136823125 - B4 SINE B4 0 292 2 3 758 1313 281 79 48 chr3 22777460 22777678 -136822105 + RMER5 LTR ERV1 3 237 -297 3 758 372 71 0 0 chr3 22777678 22777734 -136822049 + (TCCA)n Simple_repeat Simple_repeat 1 56 0 3 758 1300 281 79 48 chr3 22777734 22778019 -136821764 + RMER5 LTR ERV1 238 522 -12 3 758 655 322 32 27 chr3 22778640 22778860 -136820923 + MTD LTR MaLR 105 325 -94 3 758 439 387 67 0 chr3 22778991 22779185 -136820598 + B4A SINE B4 2 208 -84 3 758 462 18 0 0 chr3 22779235 22779290 -136820493 + (CA)n Simple_repeat Simple_repeat 1 55 0 3 758 1306 55 28 6 chr3 22779357 22779538 -136820245 - L1Md_F3 LINE L1 0 6584 6400 3 758 774 84 0 0 chr3 22780465 22780572 -136819211 + (GGGAGA)n Simple_repeat Simple_repeat 6 112 0 3 758 384 315 69 8 chr3 22781262 22781393 -136818390 - B4A SINE B4 -153 139 1 3 758 615 355 16 16 chr3 22781878 22782133 -136817650 + B4A SINE B4 3 257 -35 3 758 189 0 0 0 chr3 22782140 22782161 -136817622 + (TG)n Simple_repeat Simple_repeat 2 22 0 3 758 414 39 0 0 chr3 22782194 22782246 -136817537 + (CA)n Simple_repeat Simple_repeat 2 53 0 3 758 732 304 85 12 chr3 22782662 22782908 -136816875 + MTE2b LTR MaLR 101 364 -15 3 758 2881 50 3 0 chr3 22783292 22783649 -136816134 + L1Md_F2 LINE L1 6213 6570 -12 3 758 2564 207 75 13 chr3 22783869 22783968 -136815815 + RLTR17 LTR ERVK 5 116 -576 3 758 5259 65 4 4 chr3 22783968 22784651 -136815132 + L1Md_F2 LINE L1 5888 6570 -12 3 758 2564 207 75 13 chr3 22784651 22785099 -136814684 + RLTR17 LTR ERVK 117 585 -107 3 758 999 226 10 10 chr3 22785683 22785889 -136813894 + B3 SINE B2 4 209 -7 3 758 230 238 54 87 chr3 22787322 22787414 -136812369 - Charlie22a DNA MER1_type 0 491 403 3 758 528 30 0 0 chr3 22787695 22787761 -136812022 + (CA)n Simple_repeat Simple_repeat 1 66 0 3 758 441 0 0 0 chr3 22787761 22787809 -136811974 + (GA)n Simple_repeat Simple_repeat 2 50 0 3 758 365 314 33 44 chr3 22788039 22788219 -136811564 - MER5B DNA MER1_type 0 178 1 3 758 27 0 0 0 chr3 22788426 22788453 -136811330 + AT_rich Low_complexity Low_complexity 1 27 0 3 758 624 314 91 47 chr3 22788741 22789015 -136810768 - B4A SINE B4 -1 291 6 3 758 658 290 0 27 chr3 22789007 22789156 -136810627 - B4A SINE B4 -58 234 90 3 758 1506 257 13 5 chr3 22789397 22789777 -136810006 - Lx5 LINE L1 -11 7039 6657 3 758 997 191 0 5 chr3 22790088 22790272 -136809511 + URR1B DNA MER1_type 42 224 -1 3 758 270 0 0 0 chr3 22792234 22792264 -136807519 + (A)n Simple_repeat Simple_repeat 1 30 0 3 758 360 0 0 0 chr3 22792370 22792410 -136807373 + (CA)n Simple_repeat Simple_repeat 2 41 0 3 758 227 226 0 16 chr3 22794143 22794206 -136805577 + (TA)n Simple_repeat Simple_repeat 2 63 0 3 758 1926 296 73 32 chr3 22794342 22795179 -136804604 - Lx8 LINE L1 -362 7111 6241 3 758 229 254 121 17 chr3 22795457 22795573 -136804210 - Lx8 LINE L1 -1566 5907 5780 3 758 1119 48 0 7 chr3 22795687 22795834 -136803949 + L1_Mus1 LINE L1 6418 6563 -4 3 758 243 0 0 0 chr3 22796576 22796603 -136803180 + (TG)n Simple_repeat Simple_repeat 2 28 0 3 758 23 0 0 0 chr3 22797269 22797292 -136802491 + AT_rich Low_complexity Low_complexity 1 23 0 3 758 295 262 12 0 chr3 22797592 22797670 -136802113 - PB1 SINE Alu -7 120 42 3 758 671 277 98 37 chr3 22797670 22797884 -136801899 + ORR1E LTR MaLR 1 227 -132 3 758 1077 266 150 72 chr3 22798078 22798166 -136801617 - RLTR20B3 LTR ERVK 0 541 440 3 758 444 67 0 0 chr3 22798166 22798226 -136801557 + (CA)n Simple_repeat Simple_repeat 2 61 0 3 758 1109 234 89 37 chr3 22798226 22798636 -136801147 - RLTR20B3 LTR ERVK -102 439 4 3 758 2299 131 34 53 chr3 22798887 22799300 -136800483 + RLTR44B LTR ERVK 1 405 0 3 758 421 73 0 0 chr3 22799301 22799356 -136800427 + RLTR44-int LTR ERVK 2 56 -2756 3 758 1100 52 0 0 chr3 22799367 22799503 -136800280 - B1_Mm SINE Alu 0 147 12 3 758 828 154 0 0 chr3 22799511 22799660 -136800123 + RLTR44-int LTR ERVK 76 224 -2588 3 758 378 115 0 32 chr3 22799663 22799726 -136800057 + RLTR44-int LTR ERVK 877 937 -1875 3 758 4351 108 3 1 chr3 22799792 22800450 -136799333 + RLTR44-int LTR ERVK 704 1489 -1323 3 758 19456 30 12 1 chr3 22800468 22803624 -136796159 - L1Md_A LINE L1 0 6582 3390 3 758 1804 91 86 17 chr3 22803624 22803925 -136795858 - RLTRETN_Mm LTR ERVK 0 322 1 3 94 17614 126 23 19 chr3 22803925 22807817 -136791966 - ETnERV2-int LTR ERVK -172 7234 2859 3 759 13985 138 23 13 chr3 22807989 22810681 -136789102 - ETnERV2-int LTR ERVK -3573 2594 1 3 759 1888 99 31 22 chr3 22810681 22811000 -136788783 - RLTRETN_Mm LTR ERVK 0 322 1 3 759 17155 37 1 13 chr3 22811000 22813988 -136785795 - L1Md_A LINE L1 -2488 3395 451 3 759 427 278 6 44 chr3 22814013 22814171 -136785612 + RLTR44-int LTR ERVK 906 1057 -5485 3 759 6488 137 14 25 chr3 22814633 22815890 -136783893 + RLTR44-int LTR ERVK 1520 2811 -1 3 759 2577 131 92 5 chr3 22815891 22816304 -136783479 + RLTR44B LTR ERVK 1 449 0 3 759 213 175 0 0 chr3 22816563 22816603 -136783180 + T-rich Low_complexity Low_complexity 1 40 0 3 759 1435 152 78 0 chr3 22817136 22817392 -136782391 - RLTR31A_Mm LTR ERVK -308 276 1 3 759 729 287 73 51 chr3 22817969 22818319 -136781464 + ORR1E LTR MaLR 1 359 0 3 759 449 357 48 60 chr3 22819351 22819601 -136780182 + MTD LTR MaLR 24 270 -149 3 759 552 236 27 20 chr3 22819653 22819786 -136779997 + MTD LTR MaLR 262 397 -22 3 759 369 43 0 0 chr3 22819786 22819833 -136779950 + (CAAAA)n Simple_repeat Simple_repeat 4 50 0 3 759 552 236 27 20 chr3 22819833 22819846 -136779937 + MTD LTR MaLR 398 408 -11 3 759 194 310 56 72 chr3 22820685 22820810 -136778973 - MIRc SINE MIR -96 172 50 3 759 744 297 48 62 chr3 22821573 22821946 -136777837 - RLTR28B LTR ERVL -38 443 76 3 759 1955 190 16 47 chr3 22822146 22822593 -136777190 + RMER10A LTR ERVL 7 439 -3 3 759 856 300 39 21 chr3 22822778 22823064 -136776719 + B4A SINE B4 2 292 0 3 759 435 349 57 23 chr3 22823725 22823901 -136775882 + B4 SINE B4 5 186 -106 3 759 324 120 0 0 chr3 22823948 22823998 -136775785 + (TA)n Simple_repeat Simple_repeat 2 51 0 3 759 180 0 0 0 chr3 22823998 22824017 -136775766 + (TG)n Simple_repeat Simple_repeat 1 20 0 3 759 1253 228 94 196 chr3 22824127 22824205 -136775578 - RMER6C LTR ERVK -13 707 629 3 759 603 0 0 0 chr3 22824205 22824272 -136775511 + (TTTC)n Simple_repeat Simple_repeat 2 68 0 3 759 1253 228 94 196 chr3 22824272 22824305 -136775478 - RMER6C LTR ERVK -92 628 612 3 759 3792 35 4 2 chr3 22824305 22824762 -136775021 - L1Md_F3 LINE L1 0 6584 6127 3 759 2026 206 151 45 chr3 22824762 22825436 -136774347 - RMER6C LTR ERVK -38 652 1 3 759 671 309 11 6 chr3 22826987 22827163 -136772620 + B4 SINE B4 116 292 0 3 759 188 122 0 24 chr3 22827176 22827218 -136772565 + (GA)n Simple_repeat Simple_repeat 2 42 0 3 759 223 376 62 23 chr3 22827894 22828071 -136771712 - L2b LINE L2 -105 3270 3087 3 759 570 287 120 40 chr3 22828430 22828655 -136771128 + B4A SINE B4 1 243 -49 3 759 256 359 68 0 chr3 22828789 22828906 -136770877 - ID_B1 SINE B4 -32 192 68 3 759 33531 49 0 5 chr3 22831555 22836999 -136762784 + L1Md_A LINE L1 76 5589 -297 3 759 8487 31 0 0 chr3 22836999 22837995 -136761788 + L1Md_A LINE L1 5590 6585 0 3 759 182 105 26 0 chr3 22838324 22838362 -136761421 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 3 759 6644 9 0 0 chr3 22839462 22840202 -136759581 + L1Md_T LINE L1 5843 6582 0 3 759 225 154 0 0 chr3 22840654 22840693 -136759090 + (CATATA)n Simple_repeat Simple_repeat 3 41 0 3 759 648 140 0 0 chr3 22840692 22840799 -136758984 + (TG)n Simple_repeat Simple_repeat 2 108 0 3 759 317 353 55 82 chr3 22840947 22841311 -136758472 - MLT1A LTR MaLR 0 374 21 3 759 594 310 121 83 chr3 22841485 22842112 -136757671 + RMER13A LTR ERVK 2 652 -208 3 759 822 340 64 21 chr3 22842271 22842601 -136757182 + ORR1E LTR MaLR 6 349 -10 3 759 953 58 0 0 chr3 22842694 22842814 -136756969 + B1_Mus1 SINE Alu 23 142 -6 3 759 231 61 0 0 chr3 22842817 22842850 -136756933 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 3 759 315 0 0 0 chr3 22844121 22844156 -136755627 + (TG)n Simple_repeat Simple_repeat 2 36 0 3 759 6186 99 95 6 chr3 22844213 22845153 -136754630 - RLTR13D5 LTR ERVK 0 1023 1 3 759 843 194 5 30 chr3 22845579 22845776 -136754007 - L1Md_F3 LINE L1 -8 6576 6385 3 759 247 355 88 31 chr3 22846545 22846645 -136753138 - MER47B DNA MER2_type -160 258 159 3 759 279 0 0 0 chr3 22846645 22846676 -136753107 + (CA)n Simple_repeat Simple_repeat 2 32 0 3 759 477 0 0 0 chr3 22846676 22846728 -136753055 + (GA)n Simple_repeat Simple_repeat 2 54 0 4 759 247 355 88 31 chr3 22846728 22846818 -136752965 - MER47B DNA MER2_type -260 158 57 3 759 205 91 0 57 chr3 22846853 22846888 -136752895 - MIRm SINE MIR -118 158 126 4 759 819 119 0 0 chr3 22846979 22847105 -136752678 + (TTTC)n Simple_repeat Simple_repeat 3 128 0 4 759 38729 18 2 6 chr3 22847959 22854342 -136745441 - L1Md_A LINE L1 -1 6581 232 4 759 26 82 0 0 chr3 22856014 22856075 -136743708 + AT_rich Low_complexity Low_complexity 1 61 0 4 759 321 219 37 47 chr3 22856824 22856960 -136742823 - MIR SINE MIR -62 200 73 4 759 234 343 0 14 chr3 22857347 22857418 -136742365 + MLT1H LTR MaLR 50 119 -430 4 759 476 268 225 0 chr3 22857657 22857795 -136741988 - MTE2b LTR MaLR -209 170 2 4 759 451 302 66 23 chr3 22857809 22858114 -136741669 - L1MC3 LINE L1 -155 7630 7313 4 759 2317 295 131 24 chr3 22858749 22859856 -136739927 - Lx8 LINE L1 -129 7344 6119 4 759 571 235 63 106 chr3 22859867 22860245 -136739538 - RMER16 LTR ERVK -78 455 1 4 759 930 127 7 13 chr3 22860245 22860397 -136739386 - RMER16-int LTR ERVK 0 5406 5256 4 759 36019 16 1 9 chr3 22860398 22865608 -136734175 + L1Md_A LINE L1 422 5586 -297 4 759 8669 22 1 0 chr3 22865608 22866603 -136733180 + L1Md_A LINE L1 5587 6582 0 4 759 3017 119 4 0 chr3 22866687 22867148 -136732635 - RMER16-int LTR ERVK -137 5269 4807 4 759 324 0 0 0 chr3 22867240 22867276 -136732507 + (TG)n Simple_repeat Simple_repeat 2 37 0 4 759 243 204 0 0 chr3 22867497 22867551 -136732232 + (TATATG)n Simple_repeat Simple_repeat 4 57 0 4 759 333 278 111 19 chr3 22867573 22867933 -136731850 - L1M4 LINE L1 -394 5790 5394 4 759 863 91 201 0 chr3 22868495 22868649 -136731134 - B2_Mm2 SINE B2 -3 192 8 4 759 3355 31 5 0 chr3 22869128 22869520 -136730263 + MTA_Mm LTR MaLR 1 394 -2 4 759 4774 63 3 2 chr3 22869520 22870153 -136729630 + MTA_Mm-int LTR MaLR 1 634 -464 4 759 447 191 0 0 chr3 22870187 22870271 -136729512 + MT2A LTR ERVL 1 84 -449 4 759 3220 128 47 2 chr3 22870311 22870827 -136728956 - Lx LINE L1 0 6654 6116 4 759 784 255 60 0 chr3 22870827 22871011 -136728772 + MT2A LTR ERVL 72 266 -267 4 759 247 209 308 0 chr3 22871017 22871108 -136728675 - ORR1D1 LTR MaLR -253 121 3 4 759 198 0 0 0 chr3 22871186 22871208 -136728575 + (CA)n Simple_repeat Simple_repeat 1 22 0 4 759 246 135 0 0 chr3 22871208 22871245 -136728538 + MT2A LTR ERVL 497 533 0 4 759 252 280 172 15 chr3 22871245 22871376 -136728407 + MER31A LTR ERV1 135 286 -199 4 759 2781 156 51 16 chr3 22871537 22872257 -136727526 - Lx2 LINE L1 -354 6643 6024 4 759 335 317 83 0 chr3 22873662 22873782 -136726001 + MLT1A0 LTR MaLR 12 141 -224 4 759 1371 244 86 122 chr3 22873965 22874256 -136725527 - RLTR20B3 LTR ERVK -43 534 298 4 759 4919 64 11 2 chr3 22874256 22874884 -136724899 - L1_Mus1 LINE L1 -12 6555 5922 4 759 1371 236 87 125 chr3 22874884 22875173 -136724610 - RLTR20B3 LTR ERVK -274 303 5 4 759 334 376 28 14 chr3 22875201 22875344 -136724439 - B4A SINE B4 -147 145 1 4 759 905 202 5 57 chr3 22877833 22878027 -136721756 + ORR1C2 LTR MaLR 1 184 -200 4 759 479 142 9 0 chr3 22878036 22878142 -136721641 + CT-rich Low_complexity Low_complexity 2 108 0 4 759 2586 182 42 18 chr3 22878187 22878691 -136721092 + RMER20A LTR ERVK 1 516 0 4 759 182 197 0 29 chr3 22878691 22878759 -136721024 + (TCTG)n Simple_repeat Simple_repeat 3 68 0 4 759 829 232 42 42 chr3 22878785 22879001 -136720782 + ORR1C2 LTR MaLR 167 382 -2 4 759 895 277 138 14 chr3 22879751 22880165 -136719618 + L1MA5 LINE L1 5542 6006 -294 4 759 394 359 83 55 chr3 22880938 22881156 -136718627 + B4A SINE B4 7 230 -62 4 759 1630 161 209 29 chr3 22882262 22882640 -136717143 + RLTR41 LTR ERV1 1 446 0 4 759 218 205 0 43 chr3 22883379 22883425 -136716358 + MIR SINE MIR 78 121 -141 4 759 7146 100 20 3 chr3 22883571 22885377 -136714406 - L1_Mus2 LINE L1 0 6566 4732 4 759 210 154 0 0 chr3 22885377 22885416 -136714367 + T-rich Low_complexity Low_complexity 1 39 0 4 759 7831 42 1 1 chr3 22885419 22886468 -136713315 - L1Md_F2 LINE L1 0 6582 5535 4 759 8414 113 26 0 chr3 22886468 22887830 -136711953 - L1_Mus2 LINE L1 -1138 4745 3349 4 759 3403 200 181 18 chr3 22889042 22889990 -136709793 + RLTR25A LTR ERVK 1 1103 0 4 759 32 26 0 0 chr3 22890228 22890267 -136709516 + AT_rich Low_complexity Low_complexity 1 39 0 4 759 3909 43 6 14 chr3 22890267 22890762 -136709021 - L1Md_F3 LINE L1 -12 6572 6082 4 759 446 281 57 7 chr3 22891814 22891954 -136707829 + MIRb SINE MIR 115 261 -7 4 759 392 328 164 27 chr3 22892844 22893202 -136706581 + MLT2B4 LTR ERVL 1 547 -9 4 759 4501 58 0 3 chr3 22895027 22895595 -136704188 - L1Md_F2 LINE L1 -1 6581 6016 4 759 318 271 23 30 chr3 22896227 22896360 -136703423 - L1M4b LINE L1 -4634 2700 2569 4 759 186 191 0 0 chr3 22896572 22896614 -136703169 + (TTG)n Simple_repeat Simple_repeat 2 43 0 4 759 371 21 21 0 chr3 22897004 22897052 -136702731 + (TC)n Simple_repeat Simple_repeat 2 50 0 4 759 244 0 56 0 chr3 22897160 22897196 -136702587 + (TTG)n Simple_repeat Simple_repeat 2 39 0 4 759 1097 80 0 0 chr3 22897196 22897334 -136702449 - B1_Mm SINE Alu -8 139 2 4 759 594 230 183 19 chr3 22897520 22897728 -136702055 - Lx8 LINE L1 -1 7472 7231 4 759 684 315 75 71 chr3 22898250 22898530 -136701253 + B4A SINE B4 1 281 -11 4 759 201 225 0 0 chr3 22898542 22898582 -136701201 + (CA)n Simple_repeat Simple_repeat 1 40 0 4 759 331 347 17 8 chr3 22899037 22899156 -136700627 - PB1 SINE Alu -7 120 1 4 759 261 0 0 0 chr3 22900612 22900641 -136699142 + (CA)n Simple_repeat Simple_repeat 2 30 0 4 759 21 0 0 0 chr3 22900761 22900782 -136699001 + AT_rich Low_complexity Low_complexity 1 21 0 4 759 21 36 0 0 chr3 22900924 22900952 -136698831 + AT_rich Low_complexity Low_complexity 1 28 0 4 759 394 314 124 12 chr3 22901396 22901557 -136698226 - B3A SINE B2 -16 182 4 4 759 699 319 4 46 chr3 22901602 22901865 -136697918 - ORR1D2 LTR MaLR -16 354 103 4 759 402 291 39 0 chr3 22902007 22902110 -136697673 + RSINE1 SINE B4 59 165 0 4 759 309 327 0 18 chr3 22902353 22902462 -136697321 - RMER30 DNA MER1_type -7 195 89 4 759 253 263 83 10 chr3 22902516 22902612 -136697171 + L1M4 LINE L1 4571 4673 -1473 4 759 306 318 20 0 chr3 22902977 22903172 -136696611 + L1M4 LINE L1 5078 5276 -870 4 759 300 53 0 0 chr3 22903185 22903223 -136696560 + (GA)n Simple_repeat Simple_repeat 2 39 0 4 759 364 283 16 48 chr3 22903393 22903519 -136696264 - B3 SINE B2 0 216 95 4 759 356 232 43 0 chr3 22903530 22903599 -136696184 + B3 SINE B2 69 140 -76 4 759 237 303 0 0 chr3 22903637 22903713 -136696070 + L1M4 LINE L1 5623 5698 -746 4 759 10974 24 0 0 chr3 22903911 22905198 -136694585 - L1_Mm LINE L1 -682 5201 3915 4 759 3763 75 0 0 chr3 22905198 22905689 -136694094 + L1Md_T LINE L1 6092 6582 0 4 759 1224 153 9 5 chr3 22906273 22906496 -136693287 - Lx LINE L1 -4 6650 6427 4 759 37454 59 9 5 chr3 22906496 22914001 -136685782 - L1Md_T LINE L1 -354 6646 298 4 759 17562 181 27 7 chr3 22914003 22917548 -136682235 - L1_Mur1 LINE L1 -516 5370 1755 4 759 34782 75 4 5 chr3 22917549 22923733 -136676050 - L1Md_F2 LINE L1 -4 6578 398 4 759 2068 103 3 7 chr3 22923733 22924037 -136675746 - L1Md_F2 LINE L1 -10 6572 6270 4 759 5854 94 6 30 chr3 22924037 22924050 -136675733 - L1Md_F2 LINE L1 -6219 397 386 4 759 5612 126 8 51 chr3 22924054 22925525 -136674258 - L1VL4 LINE L1 -2150 1409 10 4 759 1484 43 0 32 chr3 22925749 22925939 -136673844 + B2_Mm1a SINE B2 1 184 -9 4 759 23 68 0 0 chr3 22926014 22926058 -136673725 + AT_rich Low_complexity Low_complexity 1 44 0 4 759 203 295 51 0 chr3 22926140 22926218 -136673565 + GA-rich Low_complexity Low_complexity 3 84 0 4 759 958 197 21 64 chr3 22926253 22926486 -136673297 - RMER1C Other Other -74 1268 1046 4 759 26 64 0 0 chr3 22926486 22926533 -136673250 + AT_rich Low_complexity Low_complexity 1 47 0 4 759 551 237 31 75 chr3 22926533 22926761 -136673022 - RMER17C LTR ERVK -129 281 64 4 759 244 247 71 83 chr3 22926761 22926845 -136672938 - RMER1C Other Other -300 1042 960 4 759 1728 82 37 18 chr3 22926836 22927108 -136672675 + L1VL4 LINE L1 598 874 -5428 4 759 35 0 0 0 chr3 22927108 22927143 -136672640 + AT_rich Low_complexity Low_complexity 1 35 0 4 759 691 221 0 20 chr3 22927147 22927299 -136672484 + B1_Mur4 SINE Alu 1 149 -1 4 759 183 42 0 0 chr3 22928039 22928063 -136671720 + (CA)n Simple_repeat Simple_repeat 2 25 0 4 759 377 139 49 8 chr3 22928066 22928189 -136671594 + (TA)n Simple_repeat Simple_repeat 1 128 0 4 759 503 328 133 28 chr3 22928264 22928835 -136670948 - L1M5 LINE L1 -1971 4175 3545 4 759 225 175 127 0 chr3 22928925 22928988 -136670795 - L1M5 LINE L1 -2706 3440 3370 4 759 488 252 84 49 chr3 22929329 22929471 -136670312 - B3 SINE B2 -4 212 66 4 759 369 329 153 13 chr3 22929491 22929941 -136669842 - L1M5 LINE L1 -3090 3056 2544 4 759 24 0 0 0 chr3 22930020 22930044 -136669739 + AT_rich Low_complexity Low_complexity 1 24 0 4 759 2285 227 80 17 chr3 22933423 22934183 -136665600 - Lx7 LINE L1 -1764 5932 5143 4 759 986 281 164 9 chr3 22934336 22934684 -136665099 - MTD LTR MaLR 0 419 18 4 759 21 57 0 0 chr3 22935162 22935197 -136664586 + AT_rich Low_complexity Low_complexity 1 35 0 4 759 2160 77 87 0 chr3 22936090 22936348 -136663435 + ORR1A1 LTR MaLR 1 278 -68 4 759 219 36 0 0 chr3 22936348 22936376 -136663407 + (TTG)n Simple_repeat Simple_repeat 2 29 0 4 759 2160 77 87 0 chr3 22936376 22936428 -136663355 + ORR1A1 LTR MaLR 279 337 -9 4 759 11140 74 28 115 chr3 22936432 22937419 -136662364 + ORR1A1-int LTR MaLR 1 867 -925 4 94 7922 40 3 12 chr3 22937419 22938412 -136661371 + L1Md_F3 LINE L1 5587 6570 -14 4 760 11140 74 28 115 chr3 22938412 22939386 -136660397 + ORR1A1-int LTR MaLR 868 1792 0 4 760 2575 55 61 3 chr3 22939386 22939713 -136660070 + ORR1A1 LTR MaLR 1 346 0 4 760 361 300 11 0 chr3 22939954 22940044 -136659739 + RSINE1 SINE B4 44 134 -31 4 760 449 115 13 0 chr3 22940165 22940243 -136659540 + (TG)n Simple_repeat Simple_repeat 1 79 0 4 760 429 354 0 23 chr3 22940245 22940378 -136659405 - RSINE1 SINE B4 -22 143 14 4 760 229 401 46 7 chr3 22940902 22941055 -136658728 - L2a LINE L2 -298 3128 2970 4 760 364 332 20 35 chr3 22941133 22941333 -136658450 + L1MA6 LINE L1 6076 6272 -28 4 760 278 358 123 11 chr3 22941474 22941759 -136658024 - L2a LINE L2 -685 2734 2418 4 760 825 268 0 0 chr3 22942167 22942361 -136657422 + B3 SINE B2 4 197 -19 4 760 330 212 38 0 chr3 22942854 22942934 -136656849 + RMER17A-int LTR ERVK 988 1070 -658 4 760 5011 82 34 0 chr3 22942940 22943626 -136656157 + L1_Mus4 LINE L1 5928 6636 0 5 760 288 0 0 0 chr3 22943642 22943674 -136656109 + (CAA)n Simple_repeat Simple_repeat 2 33 0 5 760 1472 238 73 112 chr3 22943832 22944499 -136655284 + RMER17A-int LTR ERVK 1084 1724 -4 4 760 2586 246 147 24 chr3 22944505 22945255 -136654528 + RMER13A LTR ERVK 19 860 0 4 760 216 0 0 0 chr3 22946093 22946117 -136653666 + (TG)n Simple_repeat Simple_repeat 1 24 0 5 760 770 141 0 7 chr3 22946117 22946260 -136653523 + (TA)n Simple_repeat Simple_repeat 1 142 0 5 760 1371 261 96 11 chr3 22947062 22947531 -136652252 - Lx9 LINE L1 -1 7643 7135 5 760 6948 86 19 3 chr3 22947543 22948501 -136651282 - L1_Mus3 LINE L1 -9 6629 5657 5 760 302 256 85 0 chr3 22948499 22948581 -136651202 - Lx9 LINE L1 -449 7195 7107 5 760 284 336 113 28 chr3 22948893 22949034 -136650749 + RSINE1 SINE B4 9 161 -4 5 760 732 279 63 58 chr3 22949553 22949915 -136649868 - L1M2 LINE L1 -566 5734 5371 5 760 1116 133 0 0 chr3 22949916 22950096 -136649687 + (TTC)n Simple_repeat Simple_repeat 1 180 0 5 760 314 98 0 19 chr3 22950098 22950150 -136649633 + (TCC)n Simple_repeat Simple_repeat 3 53 0 5 760 394 351 45 0 chr3 22952022 22952176 -136647607 + RSINE1 SINE B4 3 163 -2 5 760 25 31 0 0 chr3 22952194 22952226 -136647557 + AT_rich Low_complexity Low_complexity 1 32 0 5 760 189 0 0 0 chr3 22952398 22952419 -136647364 + (CA)n Simple_repeat Simple_repeat 1 21 0 5 760 414 0 0 0 chr3 22952419 22952465 -136647318 + (TG)n Simple_repeat Simple_repeat 2 47 0 5 760 341 357 21 0 chr3 22952919 22953059 -136646724 + MIR SINE MIR 87 229 -33 5 760 672 330 27 0 chr3 22953217 22953441 -136646342 + Lx5 LINE L1 6724 6953 -97 5 760 585 168 0 0 chr3 22953711 22953818 -136645965 + (TA)n Simple_repeat Simple_repeat 1 107 0 5 760 405 58 0 0 chr3 22955733 22955785 -136643998 + (TCTA)n Simple_repeat Simple_repeat 1 52 0 5 760 229 337 91 10 chr3 22955789 22955888 -136643895 - B1F1 SINE Alu -31 118 12 5 760 349 282 50 76 chr3 22955802 22955921 -136643862 - ID_B1 SINE B4 -41 183 68 5 760 287 304 0 12 chr3 22955874 22955954 -136643829 - ID4_ SINE ID 0 83 5 5 760 292 303 40 20 chr3 22957077 22957178 -136642605 + B2_Mm2 SINE B2 1 103 -92 5 760 191 288 34 0 chr3 22957610 22957669 -136642114 - L2 LINE L2 -520 2899 2839 5 760 2650 226 27 31 chr3 22958132 22958862 -136640921 + RLTR22_Mur LTR ERVK 26 752 -1096 5 760 5495 144 19 16 chr3 22958875 22960562 -136639221 + L1VL4 LINE L1 298 2010 -1807 5 760 30 0 0 0 chr3 22963231 22963261 -136636522 + AT_rich Low_complexity Low_complexity 1 30 0 5 760 764 227 17 72 chr3 22963465 22963703 -136636080 + Lx4A LINE L1 6831 7050 0 5 760 27 49 0 0 chr3 22963805 22963846 -136635937 + AT_rich Low_complexity Low_complexity 1 41 0 5 760 3480 183 60 31 chr3 22963849 22964423 -136635360 + Lx LINE L1 548 1122 -5535 5 760 1075 73 0 0 chr3 22964423 22964560 -136635223 + B1_Mm SINE Alu 1 137 -10 5 760 212 0 36 0 chr3 22964560 22964588 -136635195 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 5 760 16753 195 53 50 chr3 22964588 22966008 -136633775 + Lx LINE L1 1123 2568 -3315 5 760 4975 68 27 1 chr3 22966008 22966670 -136633113 + L1_Mus1 LINE L1 5889 6567 0 5 760 16753 182 45 40 chr3 22966670 22970728 -136629055 + Lx LINE L1 2569 6633 -21 5 760 26 30 0 0 chr3 22970729 22970762 -136629021 + AT_rich Low_complexity Low_complexity 1 33 0 5 760 1365 267 106 20 chr3 22970764 22971253 -136628530 - Lx9 LINE L1 -62 7582 7052 5 760 191 242 0 61 chr3 22971892 22971958 -136627825 + L3 LINE CR1 1664 1725 -2764 5 760 762 157 50 7 chr3 22972419 22972560 -136627223 - B1_Mus1 SINE Alu -1 147 1 5 760 824 88 0 39 chr3 22972575 22972753 -136627030 + (TCTA)n Simple_repeat Simple_repeat 1 171 0 5 760 515 322 33 7 chr3 22972757 22972910 -136626873 - RSINE1 SINE B4 0 165 9 5 760 332 309 24 20 chr3 22973907 22974006 -136625777 - PB1D10 SINE Alu -8 109 11 5 760 374 274 53 41 chr3 22974626 22974797 -136624986 + LTR33A LTR ERVL 342 514 -6 5 760 276 337 11 0 chr3 22975732 22975821 -136623962 - Lx7 LINE L1 -2015 5681 5592 5 760 259 65 21 21 chr3 22975936 22975983 -136623800 + (CAA)n Simple_repeat Simple_repeat 1 47 0 5 760 37633 42 0 3 chr3 22976091 22982184 -136617599 - L1Md_T LINE L1 -2 6583 408 5 760 760 297 88 24 chr3 22982209 22982582 -136617201 - Kanga11a DNA Tc2 -181 789 393 5 760 262 282 56 0 chr3 22982624 22982695 -136617088 - Kanga11a DNA Tc2 -849 121 47 5 760 180 253 0 0 chr3 22982714 22982789 -136616994 + (CA)n Simple_repeat Simple_repeat 2 76 0 5 760 585 226 0 0 chr3 22982802 22982979 -136616804 + (CA)n Simple_repeat Simple_repeat 2 178 0 5 760 639 206 0 0 chr3 22982993 22983168 -136616615 + (CA)n Simple_repeat Simple_repeat 1 175 0 5 760 1839 184 20 31 chr3 22983518 22983876 -136615907 - ORR1B1 LTR MaLR 0 394 41 5 760 238 340 20 0 chr3 22985310 22985410 -136614373 - PB1D10 SINE Alu -15 102 1 5 760 38 39 0 0 chr3 22986474 22986526 -136613257 + AT_rich Low_complexity Low_complexity 1 52 0 5 760 801 291 134 34 chr3 22986956 22987082 -136612701 - MTEa LTR MaLR -27 352 193 5 760 459 0 0 0 chr3 22987082 22987133 -136612650 + (CA)n Simple_repeat Simple_repeat 2 52 0 5 760 801 291 134 34 chr3 22987133 22987326 -136612457 - MTEa LTR MaLR -187 192 1 5 760 242 330 39 0 chr3 22988855 22988958 -136610825 - PB1D10 SINE Alu -6 111 5 5 760 244 322 81 16 chr3 22989238 22989361 -136610422 - LTR33C LTR ERVL -15 614 484 5 760 363 339 65 73 chr3 22989461 22989709 -136610074 - MLT2E LTR ERVL -363 265 20 5 760 204 158 0 0 chr3 22990156 22990194 -136609589 + A-rich Low_complexity Low_complexity 1 38 0 5 760 257 319 18 18 chr3 22990786 22990949 -136608834 + L1MC LINE L1 4903 5065 -1081 5 760 276 257 50 125 chr3 22991201 22991321 -136608462 - PB1D7 SINE Alu -7 113 3 5 760 741 259 6 0 chr3 22991486 22991656 -136608127 + RMER15 LTR ERVL 3 173 -402 5 760 822 66 175 0 chr3 22991657 22992137 -136607646 + L1_Mus3 LINE L1 6467 6638 0 5 760 961 252 181 31 chr3 22992146 22992433 -136607350 + RMER15 LTR ERVL 223 552 -23 5 760 286 186 0 106 chr3 22992433 22992499 -136607284 + RMER15 LTR ERVL 515 573 -2 5 760 2138 109 134 5 chr3 22992901 22993297 -136606486 + RLTR47_MM LTR ERV1 1 447 -85 5 760 346 351 21 5 chr3 22994375 22994564 -136605219 - B3A SINE B2 -6 192 1 5 760 235 350 112 52 chr3 22994564 22994806 -136604977 + L4 LINE RTE 1554 1812 -217 5 760 1400 246 91 134 chr3 22994808 22995414 -136604369 - RMER20B LTR ERVK 0 627 48 5 760 22 0 0 0 chr3 22995874 22995896 -136603887 + AT_rich Low_complexity Low_complexity 1 22 0 5 760 182 62 31 0 chr3 22996124 22996156 -136603627 + (TTTTG)n Simple_repeat Simple_repeat 3 35 0 5 760 373 316 8 33 chr3 22996511 22996632 -136603151 + RMER15 LTR ERVL 312 429 -146 5 760 234 307 134 35 chr3 22996709 22996851 -136602932 + RMER15 LTR ERVL 417 572 -3 5 760 183 186 0 0 chr3 22997156 22997199 -136602584 + (CA)n Simple_repeat Simple_repeat 1 43 0 5 760 7538 48 2 3 chr3 22997398 22998340 -136601443 - L1Md_F2 LINE L1 0 6582 5642 5 760 3690 39 0 0 chr3 22998339 22998804 -136600979 + L1_Mm LINE L1 2917 3381 -2502 5 760 387 41 0 0 chr3 22998991 22999040 -136600743 + (TG)n Simple_repeat Simple_repeat 2 50 0 5 760 210 365 8 34 chr3 22999044 22999059 -136600724 - ID_B1 SINE B4 -9 215 159 5 760 368 225 33 22 chr3 22999059 22999150 -136600633 - B1_Mur1 SINE Alu -26 123 32 5 760 406 293 15 83 chr3 22999142 22999316 -136600467 - B3A SINE B2 -54 162 4 5 760 210 365 8 34 chr3 22999150 22999163 -136600620 - ID_B1 SINE B4 -9 158 100 5 760 560 291 39 33 chr3 23000000 23000103 -136599680 + B3 SINE B2 61 165 -51 1 760 2123 196 41 90 chr3 23000103 23000659 -136599124 - RLTR24 LTR ERV1 0 529 1 2 760 560 291 39 33 chr3 23000659 23000708 -136599075 + B3 SINE B2 166 214 -2 1 760 353 385 94 23 chr3 23001005 23001356 -136598427 - MER110 LTR ERV1 -22 469 94 3 760 22 35 0 0 chr3 23001825 23001854 -136597929 + AT_rich Low_complexity Low_complexity 1 29 0 4 760 507 304 52 52 chr3 23002046 23002296 -136597487 - MLT2B4 LTR ERVL -305 251 2 5 760 311 253 108 0 chr3 23002665 23002748 -136597035 + RSINE1 SINE B4 20 111 -54 6 760 642 26 0 0 chr3 23002768 23002844 -136596939 + (TA)n Simple_repeat Simple_repeat 2 77 0 7 760 643 309 109 27 chr3 23002883 23003212 -136596571 - ORR1E LTR MaLR 0 359 4 8 760 545 310 116 119 chr3 23003472 23003765 -136596018 + B4A SINE B4 1 292 0 9 760 1083 268 94 67 chr3 23004017 23004374 -136595409 + MTD LTR MaLR 5 377 -42 1 760 186 71 0 0 chr3 23004382 23004410 -136595373 + (GTTTG)n Simple_repeat Simple_repeat 2 29 0 1 760 888 168 0 0 chr3 23004410 23004550 -136595233 - B1_Mur4 SINE Alu -8 142 3 1 760 1083 268 94 67 chr3 23004550 23004596 -136595187 + MTD LTR MaLR 378 419 0 1 760 2190 230 41 10 chr3 23004847 23005483 -136594300 - RMER13A LTR ERVK 0 860 158 1 760 486 46 0 0 chr3 23005483 23005548 -136594235 + (CA)n Simple_repeat Simple_repeat 2 66 0 1 760 2190 212 54 2 chr3 23005548 23005612 -136594171 - RMER13A LTR ERVK -703 157 83 1 760 21 0 0 0 chr3 23005856 23005877 -136593906 + AT_rich Low_complexity Low_complexity 1 21 0 1 760 383 102 0 33 chr3 23005936 23005997 -136593786 - ORR1A1 LTR MaLR 0 346 288 1 760 2031 230 68 21 chr3 23006089 23006617 -136593166 + RLTR12A LTR ERVK 1 553 -15 1 760 258 32 0 0 chr3 23007504 23007535 -136592248 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 1 760 713 264 48 71 chr3 23007970 23008391 -136591392 + MYSERV-int LTR ERVK 3774 4020 -2530 1 760 1201 209 18 94 chr3 23008470 23008904 -136590879 + MYSERV16_I-int LTR ERVK 1015 1415 -911 2 760 269 53 0 0 chr3 23008905 23008943 -136590840 + MusHAL1 LINE L1 1908 1945 -767 2 760 607 169 16 28 chr3 23009914 23010096 -136589687 + (TA)n Simple_repeat Simple_repeat 1 180 0 2 760 387 60 0 0 chr3 23010098 23010148 -136589635 + (TG)n Simple_repeat Simple_repeat 1 50 0 2 760 572 336 90 50 chr3 23010476 23010931 -136588852 + MER110 LTR ERV1 1 473 -18 2 760 925 304 20 8 chr3 23011180 23011435 -136588348 + B4 SINE B4 29 286 -6 2 760 185 226 18 54 chr3 23011828 23011884 -136587899 + L3 LINE CR1 2108 2161 -2328 2 760 21 0 0 0 chr3 23012083 23012104 -136587679 + AT_rich Low_complexity Low_complexity 1 21 0 2 760 2068 136 12 0 chr3 23012175 23012498 -136587285 - ORR1A2 LTR MaLR 0 327 1 2 760 277 299 0 0 chr3 23013483 23013560 -136586223 - PB1D10 SINE Alu -29 88 12 2 760 2750 135 28 5 chr3 23013579 23014002 -136585781 - RLTR10C LTR ERVK -3 433 1 3 760 2408 164 122 100 chr3 23014259 23014857 -136584926 + RMER19C LTR ERVK 1 611 0 3 760 485 316 107 101 chr3 23015550 23015916 -136583867 - MTE2a LTR MaLR -6 373 6 3 760 447 145 0 0 chr3 23016472 23016555 -136583228 + (TC)n Simple_repeat Simple_repeat 2 84 0 3 760 188 163 0 23 chr3 23016598 23016642 -136583141 + CT-rich Low_complexity Low_complexity 2 44 0 3 760 7400 54 2 9 chr3 23017408 23018356 -136581427 - L1Md_F2 LINE L1 -1 6581 5641 3 760 1815 125 27 17 chr3 23018462 23018763 -136581020 - L1_Mus3 LINE L1 -4 6634 6331 3 760 3853 98 2 0 chr3 23018763 23019296 -136580487 + L1_Mus3 LINE L1 5734 6267 -371 3 760 298 329 147 49 chr3 23019466 23019629 -136580154 - Lx8 LINE L1 -209 7264 7086 3 760 252 86 0 0 chr3 23020746 23020781 -136579002 + (TC)n Simple_repeat Simple_repeat 2 36 0 3 760 477 0 0 0 chr3 23020781 23020834 -136578949 + (CA)n Simple_repeat Simple_repeat 2 54 0 3 760 276 380 49 35 chr3 23020846 23021130 -136578653 + B4A SINE B4 1 288 -4 4 760 216 257 0 41 chr3 23021132 23021205 -136578578 + (CATA)n Simple_repeat Simple_repeat 1 70 0 4 760 237 33 0 0 chr3 23021982 23022012 -136577771 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 4 760 1012 247 67 18 chr3 23023355 23023639 -136576144 - MTD LTR MaLR -119 300 3 4 760 260 350 103 0 chr3 23024024 23024121 -136575662 - ID_B1 SINE B4 -115 109 3 4 760 209 275 188 0 chr3 23024265 23024345 -136575438 - MIRb SINE MIR -110 158 64 4 760 557 345 18 5 chr3 23025820 23026041 -136573742 - ID_B1 SINE B4 0 224 1 4 760 331 296 0 0 chr3 23026944 23027015 -136572768 + ID4_ SINE ID 13 83 0 4 760 448 45 30 0 chr3 23027182 23027249 -136572534 + (TCTA)n Simple_repeat Simple_repeat 2 70 0 4 760 381 164 110 0 chr3 23027314 23027387 -136572396 + B3A SINE B2 2 82 -116 4 760 924 253 213 13 chr3 23027419 23027720 -136572063 - Lx9 LINE L1 -179 7465 7105 5 760 874 292 14 5 chr3 23027998 23028208 -136571575 - B4 SINE B4 -79 213 2 5 760 228 372 0 25 chr3 23028306 23028386 -136571397 - MLT1H LTR MaLR -377 172 95 5 760 415 327 83 48 chr3 23028981 23029209 -136570574 + RLTR18 LTR ERVK 53 288 -328 5 760 574 316 67 42 chr3 23029361 23029599 -136570184 + RLTR18 LTR ERVK 369 612 -4 5 760 317 328 77 8 chr3 23029726 23029843 -136569940 + PB1 SINE Alu 1 125 -2 5 760 277 329 28 35 chr3 23030046 23030191 -136569592 - L1MEd LINE L1 -5415 704 561 5 760 278 93 37 0 chr3 23030895 23030949 -136568834 + (CAAA)n Simple_repeat Simple_repeat 2 57 0 5 760 664 217 23 0 chr3 23031141 23031270 -136568513 + Lx9 LINE L1 6643 6774 -870 5 760 316 270 141 90 chr3 23031270 23031604 -136568179 + RMER17C LTR ERVK 1 351 -59 5 760 3384 206 67 13 chr3 23031628 23032463 -136567320 + Lx9 LINE L1 6765 7644 0 5 760 183 162 0 0 chr3 23032782 23032819 -136566964 + (CA)n Simple_repeat Simple_repeat 2 38 0 5 760 384 345 101 7 chr3 23033228 23033377 -136566406 + ID_B1 SINE B4 54 216 -8 6 760 209 200 0 0 chr3 23033377 23033417 -136566366 + (CAT)n Simple_repeat Simple_repeat 3 42 0 6 760 264 366 46 17 chr3 23034072 23034247 -136565536 + L2 LINE L2 2004 2183 -1236 6 760 243 0 0 0 chr3 23034473 23034500 -136565283 + (CA)n Simple_repeat Simple_repeat 2 28 0 6 760 329 286 86 112 chr3 23035113 23035310 -136564473 - B3A SINE B2 0 198 7 6 760 243 88 0 0 chr3 23035488 23035522 -136564261 + (A)n Simple_repeat Simple_repeat 1 34 0 6 760 261 0 0 0 chr3 23036178 23036207 -136563576 + (TTTG)n Simple_repeat Simple_repeat 4 32 0 6 760 377 287 15 23 chr3 23036207 23036339 -136563444 - L1MC4 LINE L1 -1103 6939 6809 6 760 187 327 0 0 chr3 23036806 23036858 -136562925 - MIRb SINE MIR -72 196 145 6 760 727 281 30 83 chr3 23038297 23038658 -136561125 - RMER17C LTR ERVK -68 342 1 6 760 566 324 136 19 chr3 23039096 23039883 -136559900 + L1MDa LINE L1 966 1844 -4789 7 760 370 308 62 15 chr3 23039978 23040126 -136559657 - MTEa LTR MaLR -1 378 223 7 760 353 315 193 7 chr3 23040137 23040287 -136559496 - MTEa LTR MaLR -196 183 6 7 760 566 296 8 17 chr3 23040365 23040602 -136559181 + L1MDa LINE L1 2006 2240 -4393 7 760 404 417 39 5 chr3 23040602 23040807 -136558976 + B4A SINE B4 1 212 -80 7 760 303 301 48 48 chr3 23040950 23041177 -136558606 + L1MDa LINE L1 3937 4163 -2374 7 760 577 359 24 10 chr3 23041248 23041456 -136558327 - ID_B1 SINE B4 -8 216 6 7 760 277 306 108 37 chr3 23041464 23041678 -136558105 + L1MD1 LINE L1 5921 6149 -93 7 760 302 309 12 0 chr3 23041945 23042026 -136557757 + LTR84a LTR ERVL 670 751 -6 7 760 26 30 0 0 chr3 23042887 23042920 -136556863 + AT_rich Low_complexity Low_complexity 1 33 0 7 760 32 26 0 0 chr3 23043797 23043836 -136555947 + AT_rich Low_complexity Low_complexity 1 39 0 7 760 2862 236 156 20 chr3 23043837 23044601 -136555182 - Lx5 LINE L1 -15 7035 6168 7 760 244 18 69 52 chr3 23044668 23044726 -136555057 + (TTTTTG)n Simple_repeat Simple_repeat 1 59 0 7 760 24 67 0 0 chr3 23044918 23044963 -136554820 + AT_rich Low_complexity Low_complexity 1 45 0 8 760 193 133 0 48 chr3 23045055 23045118 -136554665 + T-rich Low_complexity Low_complexity 1 60 0 8 760 925 148 35 0 chr3 23045119 23045261 -136554522 - B1_Mus1 SINE Alu 0 148 2 8 760 24 53 0 0 chr3 23045514 23045552 -136554231 + AT_rich Low_complexity Low_complexity 1 38 0 8 760 537 92 0 0 chr3 23045557 23045633 -136554150 + (TA)n Simple_repeat Simple_repeat 1 76 0 8 760 26 0 0 0 chr3 23045854 23045880 -136553903 + AT_rich Low_complexity Low_complexity 1 26 0 8 760 302 322 97 32 chr3 23046072 23046226 -136553557 - RSINE1 SINE B4 0 165 2 8 760 1786 153 118 21 chr3 23046778 23047151 -136552632 + RLTR9E LTR ERVK 1 409 0 8 760 971 39 19 25 chr3 23047860 23048017 -136551766 + (TTCTC)n Simple_repeat Simple_repeat 5 160 0 8 760 494 68 27 0 chr3 23048179 23048253 -136551530 + (TCCC)n Simple_repeat Simple_repeat 1 76 0 8 760 480 234 112 0 chr3 23049107 23049214 -136550569 + RSINE1 SINE B4 11 129 -36 9 760 581 49 0 12 chr3 23049259 23049341 -136550442 + (CA)n Simple_repeat Simple_repeat 2 82 0 9 760 386 146 10 0 chr3 23049423 23049519 -136550264 + GA-rich Low_complexity Low_complexity 1 97 0 9 760 2141 147 33 14 chr3 23049921 23050001 -136549782 - Lx2 LINE L1 -1109 5949 5865 9 760 387 0 0 0 chr3 23050001 23050044 -136549739 + (TC)n Simple_repeat Simple_repeat 2 44 0 9 760 351 0 0 0 chr3 23050044 23050082 -136549701 + (TG)n Simple_repeat Simple_repeat 2 40 0 9 760 3711 179 3 0 chr3 23050082 23050737 -136549046 - Lx2 LINE L1 -19 5864 5208 9 760 356 169 28 0 chr3 23050733 23050747 -136549036 + Lx2 LINE L1 5895 5910 -1090 9 760 357 43 0 0 chr3 23050747 23050794 -136548989 + (CAA)n Simple_repeat Simple_repeat 2 48 0 9 760 356 169 28 0 chr3 23050794 23050850 -136548933 + Lx2 LINE L1 5911 5966 -1034 9 760 2494 125 7 28 chr3 23050853 23051280 -136548503 + Lx2 LINE L1 6580 6997 0 9 760 364 308 42 42 chr3 23051355 23051545 -136548238 - B3A SINE B2 -8 190 1 9 760 394 178 112 0 chr3 23052242 23052349 -136547434 + Lx9 LINE L1 7524 7642 -2 9 760 22 0 0 0 chr3 23052484 23052506 -136547277 + AT_rich Low_complexity Low_complexity 1 22 0 9 760 355 299 121 44 chr3 23053099 23053305 -136546478 - L1MD LINE L1 -963 5183 4962 1 760 616 286 126 20 chr3 23053478 23053978 -136545805 - L1MD LINE L1 -1400 4746 4194 1 760 350 221 40 24 chr3 23053996 23054121 -136545662 - Lx9 LINE L1 -27 7617 7491 1 760 314 311 95 24 chr3 23054369 23054537 -136545246 - MLT-int LTR MaLR -1417 318 139 1 760 1696 279 12 30 chr3 23054566 23054638 -136545145 - Lx6 LINE L1 -28 7432 7363 1 760 2368 196 21 156 chr3 23054638 23055344 -136544439 - RMER19C LTR ERVK 0 611 1 1 760 1696 289 35 23 chr3 23055344 23056023 -136543760 - Lx6 LINE L1 -98 7362 6427 1 760 2972 209 72 45 chr3 23056042 23056134 -136543649 - L1_Mur3 LINE L1 -3736 2144 2055 1 760 306 67 0 0 chr3 23056134 23056179 -136543604 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 760 2972 219 57 58 chr3 23056179 23057374 -136542409 - L1_Mur3 LINE L1 -3826 2054 876 1 760 318 167 6 0 chr3 23057458 23057520 -136542263 + L1_Mur2 LINE L1 2080 2144 -3736 1 760 834 235 0 0 chr3 23057518 23057701 -136542082 + L1_Mur2 LINE L1 5528 5710 -167 1 760 1971 168 6 0 chr3 23058075 23058402 -136541381 + ORR1A4 LTR MaLR 1 329 0 1 760 1782 222 36 85 chr3 23058403 23058620 -136541163 + ORR1A4-int LTR MaLR 2 229 -1734 1 760 455 84 12 146 chr3 23058620 23058732 -136541051 + L1_Mus3 LINE L1 6550 6638 0 1 760 1782 222 36 85 chr3 23058732 23058987 -136540796 + ORR1A4-int LTR MaLR 230 451 -1512 1 760 212 224 20 0 chr3 23059670 23059719 -136540064 + (TA)n Simple_repeat Simple_repeat 1 50 0 1 760 330 348 26 9 chr3 23060709 23060822 -136538961 + RSINE1 SINE B4 38 152 -13 1 760 283 314 0 28 chr3 23061200 23061308 -136538475 + CT-rich Low_complexity Low_complexity 4 108 0 1 760 421 366 73 20 chr3 23061409 23061710 -136538073 - MER74C LTR ERVL -81 379 63 1 760 1224 147 32 9 chr3 23061847 23062066 -136537717 - Lx2 LINE L1 -292 6705 6482 1 760 787 166 6 25 chr3 23062046 23062207 -136537576 + Lx2 LINE L1 6772 6929 -68 1 760 369 102 18 36 chr3 23062211 23062323 -136537460 + T-rich Low_complexity Low_complexity 3 112 0 1 760 1082 84 14 0 chr3 23062325 23062467 -136537316 - B1_Mus1 SINE Alu 0 148 5 1 760 252 0 0 0 chr3 23066733 23066761 -136533022 + (TTAA)n Simple_repeat Simple_repeat 3 30 0 1 760 3561 97 19 28 chr3 23066761 23067293 -136532490 - Lx3_Mus LINE L1 -23 6986 6458 1 760 303 307 45 26 chr3 23068493 23068647 -136531136 + MMERGLN-int LTR ERV1 649 805 -6751 1 761 235 305 0 0 chr3 23068870 23068929 -136530854 + C-rich Low_complexity Low_complexity 1 59 0 1 761 2758 329 73 50 chr3 23069363 23072532 -136527251 + MMERGLN-int LTR ERV1 1180 4421 -3135 1 761 2665 31 46 3 chr3 23072624 23072947 -136526836 + IAPLTR1a_Mm LTR ERVK 1 337 0 1 761 53145 23 12 6 chr3 23072947 23079382 -136520401 + IAPEz-int LTR ERVK 8 6481 0 1 761 2665 31 46 3 chr3 23079382 23079705 -136520078 + IAPLTR1a_Mm LTR ERVK 1 337 0 1 761 1104 102 0 0 chr3 23079794 23079941 -136519842 + B1_Mm SINE Alu 1 147 0 1 761 1418 289 15 4 chr3 23080213 23080668 -136519115 + MuRRS4-int LTR ERV1 3555 4014 -1049 1 761 368 287 16 24 chr3 23080862 23080987 -136518796 + MMERGLN-int LTR ERV1 5487 5610 -1991 1 761 577 308 27 27 chr3 23082483 23082783 -136517000 + RLTR6-int LTR ERV1 7341 7640 -138 1 761 514 136 0 0 chr3 23083451 23083539 -136516244 - Lx3_Mus LINE L1 -847 6162 6075 1 761 682 234 0 0 chr3 23083540 23083664 -136516119 - B1_Mus2 SINE Alu -10 137 14 1 761 302 169 32 117 chr3 23083594 23083688 -136516095 - MT2B LTR ERVL -361 240 155 1 761 1358 202 122 6 chr3 23084318 23084600 -136515183 + ORR1D1 LTR MaLR 1 310 -64 1 761 369 0 0 0 chr3 23084600 23084641 -136515142 + (TTTTA)n Simple_repeat Simple_repeat 5 45 0 1 761 1358 202 122 6 chr3 23084641 23084686 -136515097 + ORR1D1 LTR MaLR 311 365 -9 1 761 423 132 0 0 chr3 23085104 23085172 -136514611 + (A)n Simple_repeat Simple_repeat 1 68 0 1 761 570 314 23 69 chr3 23086475 23086691 -136513092 - B3A SINE B2 -2 214 9 1 761 547 334 95 44 chr3 23086816 23087132 -136512651 + MLT1B LTR MaLR 41 372 -18 1 761 849 283 14 25 chr3 23088314 23088593 -136511190 + B4A SINE B4 1 276 -16 1 761 1023 231 91 37 chr3 23089465 23089816 -136509967 + Lx9 LINE L1 6308 6677 -967 1 761 836 203 162 3 chr3 23089809 23089967 -136509816 + Lx9 LINE L1 7302 7477 -167 1 761 261 57 0 0 chr3 23089967 23090002 -136509781 + (TG)n Simple_repeat Simple_repeat 2 36 0 1 761 836 203 162 3 chr3 23090002 23090139 -136509644 + Lx9 LINE L1 7478 7643 -1 1 761 1173 65 117 6 chr3 23090614 23090785 -136508998 - B2_Mm2 SINE B2 -4 191 2 1 761 769 249 76 0 chr3 23090794 23090991 -136508792 - B3 SINE B2 0 216 5 1 761 713 327 25 53 chr3 23093132 23093413 -136506370 + B4A SINE B4 11 283 -9 1 761 239 239 0 0 chr3 23094057 23094124 -136505659 + T-rich Low_complexity Low_complexity 4 70 0 1 761 517 265 15 7 chr3 23094126 23094263 -136505520 - B1_Mur3 SINE Alu -7 142 5 1 761 297 0 0 0 chr3 23094372 23094405 -136505378 + (CA)n Simple_repeat Simple_repeat 1 33 0 1 761 327 352 18 48 chr3 23095903 23096130 -136503653 + MIRb SINE MIR 38 257 -11 1 761 282 29 0 0 chr3 23096520 23096555 -136503228 + (TTTG)n Simple_repeat Simple_repeat 3 37 0 1 761 256 183 61 0 chr3 23096983 23097065 -136502718 - Lx9 LINE L1 -6 7638 7552 1 761 288 70 0 0 chr3 23097091 23097134 -136502649 + (CAGA)n Simple_repeat Simple_repeat 4 46 0 1 761 379 236 37 9 chr3 23097134 23097241 -136502542 - Lx9 LINE L1 -183 7461 7352 1 761 242 308 115 41 chr3 23097245 23097367 -136502416 - B3 SINE B2 -10 206 76 1 761 402 289 55 55 chr3 23098522 23098705 -136501078 + B2_Mm2 SINE B2 4 186 -9 1 761 3567 95 73 11 chr3 23100605 23101136 -136498647 + L1_Mus4 LINE L1 6066 6629 -7 1 761 2947 84 5 5 chr3 23101839 23102235 -136497548 - MTA_Mm LTR MaLR 0 396 1 1 761 994 102 7 0 chr3 23102466 23102603 -136497180 - B1_Mus1 SINE Alu -6 142 5 1 761 223 352 46 0 chr3 23103925 23104033 -136495750 - L3 LINE CR1 -257 4232 4120 1 761 711 201 0 0 chr3 23104338 23104517 -136495266 + (CA)n Simple_repeat Simple_repeat 2 180 0 1 761 22 56 0 0 chr3 23104690 23104726 -136495057 + AT_rich Low_complexity Low_complexity 1 36 0 1 761 4747 85 1 12 chr3 23105438 23106102 -136493681 + L1Md_F2 LINE L1 5926 6582 0 1 761 667 348 76 19 chr3 23108664 23109280 -136490503 + Lx8 LINE L1 6823 7473 0 1 761 21 0 0 0 chr3 23109600 23109621 -136490162 + AT_rich Low_complexity Low_complexity 1 21 0 1 761 270 351 35 9 chr3 23109635 23109750 -136490033 + B3A SINE B2 25 142 -56 1 761 405 58 43 0 chr3 23109754 23109823 -136489960 + (TCC)n Simple_repeat Simple_repeat 2 73 0 1 761 510 61 0 0 chr3 23109824 23109890 -136489893 + (TC)n Simple_repeat Simple_repeat 1 66 0 1 761 21 0 0 0 chr3 23110459 23110480 -136489303 + AT_rich Low_complexity Low_complexity 1 21 0 1 761 1522 281 65 65 chr3 23110564 23111070 -136488713 + RLTR11A LTR ERVK 6 511 -17 1 761 205 152 0 0 chr3 23111089 23111122 -136488661 + (TG)n Simple_repeat Simple_repeat 2 34 0 1 761 796 318 99 53 chr3 23111144 23111514 -136488269 - Lx9 LINE L1 -76 7568 7196 1 761 2425 99 13 52 chr3 23111514 23111898 -136487885 - L1_Mus2 LINE L1 0 6566 6198 1 761 999 318 99 53 chr3 23111898 23112287 -136487496 - Lx9 LINE L1 -449 7195 6774 1 761 612 286 29 115 chr3 23112287 23112326 -136487457 - B3A SINE B2 -4 194 168 1 761 545 42 14 0 chr3 23112326 23112398 -136487385 + (TG)n Simple_repeat Simple_repeat 1 73 0 1 761 612 286 29 115 chr3 23112398 23112567 -136487216 - B3A SINE B2 -31 167 4 1 761 545 42 14 0 chr3 23113076 23113148 -136486635 + (TTTC)n Simple_repeat Simple_repeat 2 74 0 1 761 827 37 0 0 chr3 23113154 23113263 -136486520 - L1Md_F2 LINE L1 -14 6568 6460 1 761 739 12 0 0 chr3 23113263 23113348 -136486435 + L1Md_F2 LINE L1 5986 6070 -512 1 761 27 29 0 0 chr3 23113975 23114009 -136485774 + AT_rich Low_complexity Low_complexity 1 34 0 1 761 1127 81 0 0 chr3 23114020 23114168 -136485615 - B1_Mus1 SINE Alu 0 148 1 1 761 304 277 129 45 chr3 23114692 23114847 -136484936 + L1M5 LINE L1 5341 5508 -656 1 761 330 87 0 0 chr3 23115467 23115513 -136484270 + (CAAA)n Simple_repeat Simple_repeat 2 47 0 1 761 274 291 88 35 chr3 23115832 23116003 -136483780 - L1MA6 LINE L1 -9 6291 6112 1 761 788 265 82 32 chr3 23116122 23116438 -136483345 - Lx9 LINE L1 -151 7493 7162 1 761 1502 0 12 0 chr3 23117784 23117957 -136481826 + (TCTCCC)n Simple_repeat Simple_repeat 1 175 0 1 761 386 234 90 0 chr3 23117958 23118069 -136481714 - Lx9 LINE L1 -160 7484 7364 1 761 1213 278 54 86 chr3 23118146 23118486 -136481297 - RLTR11A LTR ERVK -9 519 216 1 761 606 28 0 0 chr3 23118486 23118558 -136481225 + (TCC)n Simple_repeat Simple_repeat 1 72 0 1 761 1213 278 54 86 chr3 23118558 23118753 -136481030 - RLTR11A LTR ERVK -313 215 2 1 761 226 191 203 16 chr3 23120445 23120509 -136479274 - B3A SINE B2 -112 86 11 1 761 192 125 0 0 chr3 23120683 23120715 -136479068 + (TTA)n Simple_repeat Simple_repeat 2 33 0 1 761 215 103 26 0 chr3 23120717 23120756 -136479027 + (TA)n Simple_repeat Simple_repeat 1 40 0 1 761 1094 279 31 39 chr3 23120781 23121139 -136478644 - Lx9 LINE L1 -206 7438 7084 1 761 455 200 146 0 chr3 23121222 23121407 -136478376 - Lx9 LINE L1 -23 7621 7410 1 761 1567 302 121 22 chr3 23121781 23122424 -136477359 + Lx9 LINE L1 6373 7079 -565 1 761 1691 215 78 3 chr3 23122954 23123313 -136476470 + ORR1B1 LTR MaLR 1 386 -8 1 761 497 273 52 26 chr3 23124168 23124322 -136475461 - B4 SINE B4 0 292 135 1 761 35253 66 3 0 chr3 23124564 23130164 -136469619 - L1Md_F2 LINE L1 -12 6573 861 1 761 2081 360 31 24 chr3 23130164 23131012 -136468771 + MTE-int LTR MaLR 700 1553 -27 1 761 661 203 85 237 chr3 23131019 23131348 -136468435 + MT2A LTR ERVL 1 279 -254 1 761 234 186 0 0 chr3 23131350 23131393 -136468390 + MT2A LTR ERVL 491 533 0 1 761 460 301 52 66 chr3 23131396 23131609 -136468174 + ORR1E LTR MaLR 32 241 -118 1 761 518 346 99 47 chr3 23131757 23132270 -136467513 - L1M5 LINE L1 -2254 3892 3353 1 761 3852 66 6 12 chr3 23132398 23132905 -136466878 + L1_Mus2 LINE L1 6063 6566 0 1 761 296 322 26 0 chr3 23133182 23133297 -136466486 - RMER15 LTR ERVL -36 539 422 1 761 541 69 11 11 chr3 23133808 23133896 -136465887 + (TC)n Simple_repeat Simple_repeat 2 89 0 1 761 398 154 0 13 chr3 23133897 23133976 -136465807 + (CA)n Simple_repeat Simple_repeat 2 79 0 1 761 271 194 15 15 chr3 23135261 23135329 -136464454 - L1M5 LINE L1 -736 5443 5376 1 761 344 284 19 29 chr3 23135356 23135461 -136464322 - B1_Mur1 SINE Alu -27 122 19 1 761 273 57 0 0 chr3 23135463 23135498 -136464285 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 2 761 5907 189 17 6 chr3 23135547 23136649 -136463134 - Lx4A LINE L1 0 7058 5945 2 761 23 68 0 0 chr3 23137240 23137284 -136462499 + AT_rich Low_complexity Low_complexity 1 44 0 2 761 1056 193 39 5 chr3 23137448 23137651 -136462132 - MTC LTR MaLR -52 369 160 2 761 553 300 148 11 chr3 23138066 23138349 -136461434 + Lx9 LINE L1 6729 7050 -594 2 761 27 29 0 0 chr3 23138756 23138790 -136460993 + AT_rich Low_complexity Low_complexity 1 34 0 2 761 3635 67 2 2 chr3 23138920 23139402 -136460381 + L1Md_F2 LINE L1 6096 6577 -5 2 761 26 0 0 0 chr3 23139414 23139440 -136460343 + AT_rich Low_complexity Low_complexity 1 26 0 2 761 306 360 68 98 chr3 23139509 23139805 -136459978 - B4A SINE B4 -4 288 2 2 761 2645 147 114 9 chr3 23139835 23140615 -136459168 + L1_Mur2 LINE L1 632 1514 -4363 2 761 11911 137 26 22 chr3 23140615 23142765 -136457018 + L1_Mur2 LINE L1 3633 5791 -86 2 761 7897 73 0 0 chr3 23142765 23143788 -136455995 + L1Md_F2 LINE L1 4563 5585 -298 2 761 7980 54 0 1 chr3 23143789 23144790 -136454993 + L1Md_F2 LINE L1 5587 6582 0 2 761 6761 176 18 4 chr3 23144803 23146052 -136453731 + Lx4A LINE L1 5785 7051 -7 2 761 813 97 35 0 chr3 23146096 23146210 -136453573 - Lx LINE L1 -507 6147 6030 2 761 2671 144 55 2 chr3 23146214 23146687 -136453096 + Lx LINE L1 6154 6651 -3 2 761 528 65 0 0 chr3 23146912 23146989 -136452794 + (GA)n Simple_repeat Simple_repeat 2 78 0 2 761 3963 290 91 17 chr3 23146989 23148337 -136451446 - Lx6 LINE L1 -21 7439 5992 2 761 1237 185 24 16 chr3 23148333 23148586 -136451197 - L1_Mur2 LINE L1 -1539 4338 4084 2 761 604 167 0 0 chr3 23149001 23149097 -136450686 + MTC LTR MaLR 1 96 -325 2 761 454 255 83 25 chr3 23149097 23149254 -136450529 + Lx5 LINE L1 6885 7050 0 2 761 1388 232 6 32 chr3 23149271 23149457 -136450326 + MTC LTR MaLR 105 285 -136 2 761 4459 129 77 8 chr3 23149457 23150213 -136449570 - RMER17D2 LTR ERVK 0 809 2 2 761 1388 232 6 32 chr3 23150213 23150338 -136449445 + MTC LTR MaLR 286 408 -13 2 761 4554 144 126 1 chr3 23150899 23151694 -136448089 - Lx LINE L1 0 6654 5761 2 761 984 147 59 0 chr3 23151700 23151870 -136447913 + RMER17A2 LTR ERVK 727 906 0 2 761 1381 82 10 10 chr3 23151870 23152079 -136447704 + L1_Mus3 LINE L1 6425 6633 -5 2 761 450 0 0 0 chr3 23152759 23152809 -136446974 + (GA)n Simple_repeat Simple_repeat 1 50 0 2 761 2240 327 70 46 chr3 23153532 23153843 -136445940 + Lx8 LINE L1 6189 6528 -945 2 761 489 17 0 0 chr3 23153843 23153901 -136445882 + (CTAAA)n Simple_repeat Simple_repeat 3 60 0 2 761 2240 327 70 46 chr3 23153901 23154830 -136444953 + Lx8 LINE L1 6529 7461 -12 2 761 2843 34 8 19 chr3 23154830 23155194 -136444589 - L1Md_F3 LINE L1 -1 6583 6224 2 761 25 51 0 0 chr3 23155761 23155800 -136443983 + AT_rich Low_complexity Low_complexity 1 39 0 2 761 23 0 0 0 chr3 23156496 23156519 -136443264 + AT_rich Low_complexity Low_complexity 1 23 0 2 761 38267 40 1 1 chr3 23157006 23163175 -136436608 - L1Md_T LINE L1 -12 6570 439 2 761 231 362 45 51 chr3 23163408 23163565 -136436218 + Tigger5 DNA MER2_type 9 164 -2242 2 761 815 170 6 24 chr3 23163753 23163922 -136435861 + L1_Mur1 LINE L1 5143 5308 -578 2 761 3809 137 8 3 chr3 23163967 23164589 -136435194 - L1_Mur1 LINE L1 -704 5182 4558 2 761 192 77 0 0 chr3 23164712 23164738 -136435045 + (TATG)n Simple_repeat Simple_repeat 2 27 0 2 761 507 123 0 0 chr3 23164888 23164969 -136434814 + (TA)n Simple_repeat Simple_repeat 2 82 0 2 761 265 396 36 57 chr3 23164973 23165166 -136434617 + B4A SINE B4 104 292 0 2 761 22 35 0 0 chr3 23165937 23165966 -136433817 + AT_rich Low_complexity Low_complexity 1 29 0 2 761 405 102 0 0 chr3 23166651 23166710 -136433073 + (TA)n Simple_repeat Simple_repeat 2 60 0 2 761 240 35 0 0 chr3 23166710 23166738 -136433045 + (TG)n Simple_repeat Simple_repeat 2 30 0 2 761 5161 216 129 8 chr3 23167323 23168918 -136430865 - Lx6 LINE L1 -198 5682 3895 2 761 1235 222 91 31 chr3 23168919 23169168 -136430615 + Lx6 LINE L1 5677 5951 -1509 2 761 1454 211 63 29 chr3 23169168 23169549 -136430234 + ORR1B1 LTR MaLR 1 394 0 2 761 1235 222 91 31 chr3 23169549 23169717 -136430066 + Lx6 LINE L1 5952 6119 -1341 2 761 3287 43 2 2 chr3 23169718 23170114 -136429669 - MTA_Mm LTR MaLR 0 396 1 2 761 7592 71 11 6 chr3 23170114 23171176 -136428607 - MTA_Mm-int LTR MaLR 0 1098 31 2 761 3864 73 72 8 chr3 23171178 23171704 -136428079 + LTRIS2 LTR ERV1 5 564 0 2 761 676 90 0 2 chr3 23171915 23172024 -136427759 + RLTR1B-int LTR ERV1 139 293 -3006 2 761 838 133 68 19 chr3 23172368 23172529 -136427254 + RMER16-int LTR ERVK 142 310 -5096 2 761 189 0 0 0 chr3 23172530 23172551 -136427232 + (TAAAA)n Simple_repeat Simple_repeat 4 24 0 2 761 4022 148 52 15 chr3 23172551 23173267 -136426516 + RMER16-int LTR ERVK 703 1444 -3962 2 761 8507 131 71 72 chr3 23173258 23175553 -136424230 + RLTR1B-int LTR ERV1 760 2526 -773 2 761 2670 63 11 3 chr3 23175553 23175936 -136423847 - MTA_Mm LTR MaLR -21 400 1 2 761 803 240 26 73 chr3 23175947 23176338 -136423445 + Lx6 LINE L1 6128 6736 -724 2 761 420 281 19 70 chr3 23176376 23176533 -136423250 + Lx6 LINE L1 6699 6847 -613 2 761 1089 299 22 16 chr3 23176567 23176931 -136422852 + Lx6 LINE L1 7033 7398 -62 2 761 21 36 0 0 chr3 23177352 23177380 -136422403 + AT_rich Low_complexity Low_complexity 1 28 0 2 761 346 309 32 0 chr3 23177383 23177477 -136422306 - B1F2 SINE Alu -52 97 1 2 761 222 346 56 56 chr3 23177477 23177490 -136422293 - ID_B1 SINE B4 -49 175 69 2 761 469 303 38 13 chr3 23178479 23178636 -136421147 + RSINE1 SINE B4 1 161 -4 2 761 200 191 58 14 chr3 23178697 23178766 -136421017 + (TAGA)n Simple_repeat Simple_repeat 2 73 0 2 761 423 152 0 0 chr3 23178766 23178845 -136420938 + (CA)n Simple_repeat Simple_repeat 2 80 0 2 761 245 51 0 25 chr3 23180833 23180873 -136418910 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 2 761 1103 80 0 0 chr3 23180873 23181011 -136418772 - B1_Mus2 SINE Alu -9 138 1 2 761 180 0 0 0 chr3 23182864 23182884 -136416899 + (TA)n Simple_repeat Simple_repeat 2 21 0 2 761 2398 198 120 0 chr3 23183666 23184095 -136415688 + RLTR20A2 LTR ERVK 1 479 -99 2 761 414 0 0 0 chr3 23184095 23184141 -136415642 + (TG)n Simple_repeat Simple_repeat 2 47 0 2 761 2398 198 120 0 chr3 23184141 23184227 -136415556 + RLTR20A2 LTR ERVK 480 577 -1 2 761 1228 250 71 136 chr3 23184383 23184777 -136415006 + RLTR11A2 LTR ERVK 1 382 -145 2 761 2132 96 0 79 chr3 23184777 23185117 -136414666 + L1_Mus2 LINE L1 6240 6552 -14 2 761 720 89 0 0 chr3 23185121 23185222 -136414561 + (GAAA)n Simple_repeat Simple_repeat 4 104 0 2 761 1228 250 71 136 chr3 23185222 23185382 -136414401 + RLTR11A2 LTR ERVK 383 524 -3 2 761 5099 139 82 11 chr3 23185574 23186420 -136413363 + RMER17A2 LTR ERVK 1 906 0 2 761 207 0 0 0 chr3 23186894 23186917 -136412866 + (TA)n Simple_repeat Simple_repeat 2 24 0 2 761 21 0 0 0 chr3 23187029 23187050 -136412733 + AT_rich Low_complexity Low_complexity 1 21 0 2 761 5434 130 14 3 chr3 23187346 23188194 -136411589 - L1_Mus4 LINE L1 -5 6631 5775 2 761 5423 176 63 17 chr3 23188194 23189431 -136410352 - L1_Mus4 LINE L1 -467 5416 4123 2 761 929 207 31 152 chr3 23189435 23189789 -136409994 + RLTRETN_Mm LTR ERVK 12 322 0 2 761 6682 171 19 13 chr3 23189790 23190207 -136409576 - L1_Mur1 LINE L1 -1755 4131 3722 2 761 4053 144 45 52 chr3 23190207 23191021 -136408762 - RMER17D2 LTR ERVK 0 809 1 2 761 6682 171 19 13 chr3 23191021 23191718 -136408065 - L1_Mur1 LINE L1 -2165 3721 3009 2 761 231 36 0 0 chr3 23191718 23191746 -136408037 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 2 761 6682 171 19 13 chr3 23191746 23191838 -136407945 - L1_Mur1 LINE L1 -2878 3008 2918 2 761 252 0 0 0 chr3 23191848 23191876 -136407907 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 2 761 1007 124 0 20 chr3 23191876 23192013 -136407770 - B1_Mus2 SINE Alu -12 135 1 2 761 6682 171 19 13 chr3 23192013 23192212 -136407571 - L1_Mur1 LINE L1 -2969 2917 2717 2 761 5961 52 8 14 chr3 23192212 23192988 -136406795 - L1Md_F2 LINE L1 0 6582 5812 2 761 2067 62 0 0 chr3 23192988 23193280 -136406503 - MusHAL1 LINE L1 -2293 419 128 2 761 347 301 48 27 chr3 23193963 23194110 -136405673 + MamRep605 Unknown Unknown 27 176 -700 2 761 27 0 0 0 chr3 23194307 23194334 -136405449 + AT_rich Low_complexity Low_complexity 1 27 0 2 761 261 0 0 0 chr3 23196716 23196745 -136403038 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 2 761 3453 211 15 4 chr3 23197800 23198485 -136401298 - RLTR17 LTR ERVK 0 692 1 2 761 251 252 22 73 chr3 23198944 23199055 -136400728 + B1F SINE Alu 9 149 0 2 762 37816 22 1 0 chr3 23200963 23206644 -136393139 - L1Md_A LINE L1 -1 6581 892 2 762 36657 9 0 0 chr3 23206645 23212225 -136387558 + L1Md_A LINE L1 7 5586 -297 2 762 9031 4 0 0 chr3 23212225 23213221 -136386562 + L1Md_A LINE L1 5587 6582 0 2 762 3435 56 19 2 chr3 23213225 23213707 -136386076 - L1Md_A LINE L1 -5819 905 416 2 762 18085 123 8 1 chr3 23214068 23217806 -136381977 - L1_Mus2 LINE L1 -2 6564 2798 2 762 33243 76 6 15 chr3 23217798 23224021 -136375762 - L1Md_F2 LINE L1 -6 6576 412 2 762 4292 140 54 1 chr3 23224017 23224795 -136374988 - L1_Mus2 LINE L1 -3076 2807 1989 2 762 28 79 0 0 chr3 23224999 23225062 -136374721 + AT_rich Low_complexity Low_complexity 1 63 0 2 762 1312 259 65 39 chr3 23225784 23226215 -136373568 + RMER10A LTR ERVL 1 442 0 2 762 180 234 0 0 chr3 23226247 23226294 -136373489 + (TTTA)n Simple_repeat Simple_repeat 1 47 0 2 762 1501 154 116 3 chr3 23227443 23227737 -136372046 - IAPEY3_LTR LTR ERVK -5 327 1 2 762 7317 86 4 2 chr3 23227875 23229462 -136370321 - L1Md_F2 LINE L1 -6 6576 4987 2 762 198 0 0 0 chr3 23229462 23229484 -136370299 + (T)n Simple_repeat Simple_repeat 1 22 0 2 762 3140 73 2 0 chr3 23229512 23229923 -136369860 - L1Md_A LINE L1 -1 6581 6170 2 762 452 137 14 0 chr3 23229930 23230003 -136369780 - L1Md_F2 LINE L1 -884 4999 4926 2 762 2841 85 0 0 chr3 23230000 23230400 -136369383 + L1_Mm LINE L1 1833 2232 -3651 2 762 189 121 0 0 chr3 23230878 23230911 -136368872 + (A)n Simple_repeat Simple_repeat 1 33 0 2 762 648 270 67 118 chr3 23231106 23231598 -136368185 + RLTR19-int LTR ERVK 2532 2998 -3139 2 762 3398 61 9 7 chr3 23231680 23232127 -136367656 - L1Md_F2 LINE L1 -1 6581 6134 2 762 320 164 29 29 chr3 23232384 23232453 -136367330 + RLTR19-int LTR ERVK 3189 3257 -2880 2 762 280 48 71 0 chr3 23233082 23233124 -136366659 + RLTR19-int LTR ERVK 3529 3573 -2564 2 762 1342 181 145 27 chr3 23233127 23233423 -136366360 - RLTR23 LTR ERV1 -2 428 98 2 762 223 207 0 17 chr3 23233452 23233511 -136366272 + T-rich Low_complexity Low_complexity 2 59 0 2 762 697 82 10 0 chr3 23233518 23233615 -136366168 - RLTR23 LTR ERV1 -326 104 7 2 762 658 212 53 63 chr3 23233665 23233871 -136365912 + RLTR19-int LTR ERVK 3600 3803 -2334 2 762 398 283 88 54 chr3 23233931 23234170 -136365613 + RMER17C-int LTR ERVK 2627 2873 -365 2 762 3593 65 2 0 chr3 23234469 23234915 -136364868 - LTRIS5 LTR ERV1 0 447 1 2 762 1483 216 43 70 chr3 23234942 23235411 -136364372 + RLTR41 LTR ERV1 1 414 -32 2 762 324 0 0 0 chr3 23235411 23235447 -136364336 + (TG)n Simple_repeat Simple_repeat 2 37 0 2 762 1483 221 44 91 chr3 23235447 23235483 -136364300 + RLTR41 LTR ERV1 415 446 0 2 762 1764 224 22 56 chr3 23235483 23235927 -136363856 + RMER10A LTR ERVL 13 441 -1 2 762 297 0 0 0 chr3 23236860 23236893 -136362890 + (CA)n Simple_repeat Simple_repeat 2 34 0 2 762 1322 38 0 0 chr3 23237071 23237231 -136362552 + B2_Mm1t SINE B2 1 160 -33 3 762 432 0 0 0 chr3 23237231 23237279 -136362504 + (TAAA)n Simple_repeat Simple_repeat 3 50 0 3 762 439 308 8 16 chr3 23237697 23237819 -136361964 + RSINE1 SINE B4 2 122 -43 3 762 1145 111 0 11 chr3 23237878 23238060 -136361723 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 3 762 910 148 11 0 chr3 23238062 23238238 -136361545 + CT-rich Low_complexity Low_complexity 1 178 0 3 762 293 327 97 103 chr3 23238318 23238608 -136361175 - B4 SINE B4 -2 290 3 3 762 3659 127 93 14 chr3 23239707 23240404 -136359379 - RMER17D2 LTR ERVK -57 752 1 3 762 5182 131 51 7 chr3 23240406 23241307 -136358476 - RMER17A-int LTR ERVK -2 1726 786 3 762 657 0 0 0 chr3 23241696 23241769 -136358014 + (GA)n Simple_repeat Simple_repeat 1 73 0 3 762 282 192 19 0 chr3 23241774 23241826 -136357957 - RMER17A-int LTR ERVK -1673 55 3 3 762 301 141 30 30 chr3 23241828 23241894 -136357889 - RMER17D2 LTR ERVK 0 809 744 3 762 1224 190 155 0 chr3 23242263 23242534 -136357249 - RLTR17 LTR ERVK 0 692 380 3 762 24071 126 15 8 chr3 23242534 23247154 -136352629 + L1_Mus2 LINE L1 1916 6566 0 3 762 965 238 20 8 chr3 23247279 23247533 -136352250 - L1_Mur2 LINE L1 -534 5343 5087 3 762 1147 320 83 63 chr3 23247601 23248265 -136351518 + Lx8 LINE L1 6356 7032 -441 3 762 575 206 45 52 chr3 23248336 23248490 -136351293 + MTEa LTR MaLR 224 376 -3 3 762 1586 186 63 0 chr3 23249301 23249651 -136350132 + MYSERV16_I-int LTR ERVK 1951 2322 -4 3 762 1902 165 157 3 chr3 23249655 23250037 -136349746 + BGLII_B LTR ERVK 1 441 0 3 762 2301 185 32 35 chr3 23250037 23250570 -136349213 + MYSERV16_I-int LTR ERVK 1791 2322 -4 3 762 1520 221 100 48 chr3 23250570 23250989 -136348794 + BGLII_B LTR ERVK 1 441 0 3 762 462 322 32 36 chr3 23251159 23251407 -136348376 - B4A SINE B4 -43 249 3 3 762 24 32 0 0 chr3 23251702 23251733 -136348050 + AT_rich Low_complexity Low_complexity 1 31 0 3 762 260 303 61 0 chr3 23252365 23252431 -136347352 - B1F SINE Alu -26 123 54 3 762 253 315 14 14 chr3 23252366 23252440 -136347343 - ID_B1 SINE B4 -24 200 127 3 762 35287 35 1 0 chr3 23252472 23257894 -136341889 + L1Md_T LINE L1 67 5589 -297 3 762 8866 8 0 5 chr3 23257894 23258895 -136340888 + L1Md_T LINE L1 5590 6585 0 3 762 546 146 0 0 chr3 23259480 23259576 -136340207 + (TA)n Simple_repeat Simple_repeat 2 97 0 3 762 486 363 30 34 chr3 23259752 23260017 -136339766 - MT2A LTR ERVL -160 373 110 3 762 7062 30 5 7 chr3 23260126 23260969 -136338814 - L1Md_A LINE L1 -1 6581 5741 3 762 303 374 63 19 chr3 23261443 23261713 -136338070 + L1ME1 LINE L1 5697 5978 -201 3 762 1849 179 14 19 chr3 23262471 23262888 -136336895 + Lx5 LINE L1 2862 3276 -2601 3 762 1441 237 65 28 chr3 23262943 23263342 -136336441 - RMER20A LTR ERVK -92 424 11 3 762 5008 178 65 2 chr3 23263349 23264404 -136335379 + Lx5 LINE L1 3274 4394 -1483 3 762 5883 193 14 6 chr3 23264396 23265014 -136334769 + Lx5 LINE L1 5398 6032 -1018 3 762 618 14 0 0 chr3 23265014 23265085 -136334698 + (GA)n Simple_repeat Simple_repeat 1 71 0 3 762 5883 205 57 11 chr3 23265085 23265892 -136333891 + Lx5 LINE L1 6033 6884 -166 3 762 232 327 9 63 chr3 23266104 23266215 -136333568 - LTR40b LTR ERVL -320 142 38 3 762 395 308 25 8 chr3 23266878 23266996 -136332787 + ID_B1 SINE B4 99 218 -6 3 762 22 35 0 0 chr3 23267079 23267108 -136332675 + AT_rich Low_complexity Low_complexity 1 29 0 3 762 24 0 0 0 chr3 23267213 23267237 -136332546 + AT_rich Low_complexity Low_complexity 1 24 0 3 762 1283 312 66 7 chr3 23268436 23269021 -136330762 - Lx5 LINE L1 -708 6752 5902 3 762 1230 178 39 101 chr3 23269022 23269359 -136330424 + RMER17C LTR ERVK 2 317 -93 3 762 6444 205 41 28 chr3 23269359 23270914 -136328869 - Lx5 LINE L1 -11 5869 4294 3 762 1582 291 50 13 chr3 23270914 23271542 -136328241 + Lx6 LINE L1 6454 7460 0 3 762 225 178 0 0 chr3 23274767 23274812 -136324971 + (TCTA)n Simple_repeat Simple_repeat 1 45 0 3 762 21 57 0 0 chr3 23275110 23275145 -136324638 + AT_rich Low_complexity Low_complexity 1 35 0 3 762 2971 41 5 0 chr3 23275184 23275553 -136324230 + MTA_Mm LTR MaLR 26 396 0 3 762 27 29 0 0 chr3 23275708 23275742 -136324041 + AT_rich Low_complexity Low_complexity 1 34 0 3 762 266 355 46 74 chr3 23275758 23275974 -136323809 - L2a LINE L2 -3 3423 3214 3 762 5214 61 6 10 chr3 23276014 23276690 -136323093 + L1_Mus1 LINE L1 5893 6565 -2 3 762 225 256 0 0 chr3 23276951 23276994 -136322789 - RMER13B LTR ERVK -7 901 859 3 762 3512 217 43 12 chr3 23277012 23277757 -136322026 - RMER13B LTR ERVK -136 772 5 3 762 24 32 0 0 chr3 23278381 23278412 -136321371 + AT_rich Low_complexity Low_complexity 1 31 0 3 762 5928 129 15 16 chr3 23279077 23280892 -136318891 + L1Md_F LINE L1 212 2021 -3865 3 762 1346 212 40 25 chr3 23280892 23281246 -136318537 - RLTR10D LTR ERVK 0 359 1 3 762 4695 199 3 45 chr3 23281246 23281508 -136318275 + L1Md_F LINE L1 2022 2280 -3606 3 762 260 329 19 83 chr3 23283393 23283549 -136316234 - MIR SINE MIR 0 262 117 3 762 1313 222 176 15 chr3 23283581 23283978 -136315805 + RMER6B LTR ERVK 1 461 0 3 762 657 279 40 28 chr3 23284341 23284592 -136315191 + L1_Mur3 LINE L1 4859 5112 -768 3 762 229 311 63 70 chr3 23284758 23284900 -136314883 + RLTR22_Mus LTR ERVK 1206 1346 -462 3 762 462 362 65 0 chr3 23284920 23285119 -136314664 - B4A SINE B4 -73 219 8 3 762 231 163 0 0 chr3 23285191 23285234 -136314549 - L1MEc LINE L1 -5631 769 727 3 762 21 36 0 0 chr3 23285308 23285336 -136314447 + AT_rich Low_complexity Low_complexity 1 28 0 3 762 2316 124 19 8 chr3 23285336 23285711 -136314072 + L1_Mus3 LINE L1 6253 6631 -7 3 762 330 123 0 0 chr3 23285884 23285941 -136313842 + (CCAA)n Simple_repeat Simple_repeat 1 57 0 3 762 405 0 0 0 chr3 23285954 23285999 -136313784 + (TAAAA)n Simple_repeat Simple_repeat 1 45 0 3 762 760 244 34 17 chr3 23286082 23286261 -136313522 - Lx6 LINE L1 -1108 6352 6171 3 762 444 163 0 0 chr3 23286263 23286349 -136313434 + (TA)n Simple_repeat Simple_repeat 2 87 0 3 762 10467 224 104 34 chr3 23286352 23286727 -136313056 - Lx6 LINE L1 -1540 6156 5520 3 762 964 94 0 16 chr3 23286727 23286910 -136312873 + (CAAAA)n Simple_repeat Simple_repeat 1 180 0 3 762 10467 218 101 34 chr3 23286910 23288710 -136311073 - Lx6 LINE L1 -360 5520 3483 3 762 1671 70 9 9 chr3 23288710 23288942 -136310841 - L1_Mus2 LINE L1 0 6566 6335 3 762 10467 218 101 34 chr3 23288942 23289389 -136310394 - L1_Mur3 LINE L1 -2398 3482 2999 3 762 3012 136 47 2 chr3 23289389 23289874 -136309909 - Lx2 LINE L1 0 6997 6491 3 762 10467 233 97 39 chr3 23289874 23292037 -136307746 - Lx6 LINE L1 -2882 2998 610 3 762 333 313 26 17 chr3 23292190 23292307 -136307476 + MER58B DNA MER1_type 176 293 -48 3 762 1439 53 0 0 chr3 23293176 23293363 -136306420 - L1Md_F2 LINE L1 0 6582 6396 3 762 449 19 0 0 chr3 23293363 23293417 -136306366 + L1Md_F LINE L1 823 876 -5643 3 762 4233 154 13 6 chr3 23293630 23294334 -136305449 - Lx2 LINE L1 -3 6994 6286 3 762 1028 92 168 0 chr3 23294334 23294519 -136305264 - BGLII_A LTR ERVK -1 444 229 3 762 1351 201 36 30 chr3 23294516 23294819 -136304964 + RLTR31_Mur LTR ERVK 239 543 -10 3 762 5153 174 31 1 chr3 23294822 23296211 -136303572 - Lx2 LINE L1 -698 6299 4883 3 762 414 0 0 0 chr3 23296218 23296264 -136303519 + (TG)n Simple_repeat Simple_repeat 2 47 0 3 762 329 342 0 51 chr3 23296299 23296416 -136303367 - RSINE1 SINE B4 -52 113 3 3 762 219 103 0 0 chr3 23296534 23296573 -136303210 + (TCTG)n Simple_repeat Simple_repeat 2 40 0 3 762 228 67 0 0 chr3 23296573 23296603 -136303180 + (TTCA)n Simple_repeat Simple_repeat 3 32 0 3 762 953 100 0 0 chr3 23296610 23296750 -136303033 - B1_Mus1 SINE Alu 0 148 9 3 762 2171 80 0 23 chr3 23297944 23298250 -136301533 + L1_Mus1 LINE L1 6268 6566 -1 3 762 3457 75 2 36 chr3 23298341 23298412 -136301371 - L1_Mus2 LINE L1 -499 6067 6005 3 762 680 0 0 12 chr3 23298412 23298493 -136301290 + (TTTC)n Simple_repeat Simple_repeat 1 80 0 3 762 3529 78 2 26 chr3 23298493 23299088 -136300695 - L1_Mus1 LINE L1 -562 6004 5418 3 762 3217 103 26 0 chr3 23299088 23299552 -136300231 + L1_Mus1 LINE L1 6091 6566 -1 3 762 1290 164 46 0 chr3 23300090 23300328 -136299455 - Lx3B LINE L1 0 6973 6725 3 762 208 128 51 0 chr3 23300838 23300877 -136298906 + (TTTA)n Simple_repeat Simple_repeat 3 43 0 3 762 201 309 0 0 chr3 23301355 23301410 -136298373 + (CATA)n Simple_repeat Simple_repeat 4 58 0 3 762 1829 182 56 8 chr3 23301681 23302057 -136297726 - ORR1B1 LTR MaLR 0 394 1 3 762 3289 192 23 8 chr3 23303479 23304088 -136295695 - RLTR17 LTR ERVK -74 618 1 3 762 4204 105 19 3 chr3 23304102 23304733 -136295050 + L1_Mus3 LINE L1 5998 6638 0 3 762 25 108 0 0 chr3 23304901 23305003 -136294780 + AT_rich Low_complexity Low_complexity 1 102 0 3 762 3021 56 13 10 chr3 23305650 23306045 -136293738 + MTA_Mm LTR MaLR 1 396 0 3 762 2051 155 11 6 chr3 23307595 23307945 -136291838 - Lx3B LINE L1 -2 6971 6620 3 762 29 28 0 0 chr3 23308084 23308120 -136291663 + AT_rich Low_complexity Low_complexity 1 36 0 3 762 1010 104 0 0 chr3 23309080 23309215 -136290568 + B1_Mus2 SINE Alu 1 135 -12 3 762 339 25 0 0 chr3 23309217 23309257 -136290526 + (CAAAA)n Simple_repeat Simple_repeat 2 41 0 3 762 1848 265 103 14 chr3 23309508 23310200 -136289583 - Lx5 LINE L1 -733 6727 5759 3 762 464 242 34 1 chr3 23311665 23311800 -136287983 + L1_Rod LINE L1 2191 2334 -3809 3 762 6581 200 81 71 chr3 23311896 23314302 -136285481 + L1_Mur3 LINE L1 924 3353 -2527 3 762 790 332 32 92 chr3 23314309 23314710 -136285073 + MTE2a LTR MaLR 2 378 -1 3 762 1770 210 5 5 chr3 23315036 23315414 -136284369 + Lx LINE L1 6276 6653 -1 3 762 373 381 72 76 chr3 23316110 23316360 -136283423 - MamGypLTR3 LTR Gypsy -478 361 113 3 762 251 320 106 10 chr3 23316632 23316736 -136283047 + MLT1F2 LTR MaLR 44 157 -403 3 762 213 121 0 0 chr3 23316799 23316832 -136282951 + (A)n Simple_repeat Simple_repeat 1 33 0 3 762 207 0 0 0 chr3 23317417 23317440 -136282343 + (TTTTG)n Simple_repeat Simple_repeat 5 27 0 3 762 5548 100 9 0 chr3 23318207 23318980 -136280803 - L1_Mus4 LINE L1 -137 6499 5720 3 762 637 63 0 0 chr3 23318981 23319076 -136280707 + L1_Mus4 LINE L1 6519 6613 -23 3 762 531 98 0 0 chr3 23319922 23320014 -136279769 + (CAAAC)n Simple_repeat Simple_repeat 3 94 0 3 762 195 69 0 0 chr3 23320041 23320070 -136279713 + (T)n Simple_repeat Simple_repeat 1 29 0 3 762 21 36 0 0 chr3 23320138 23320166 -136279617 + AT_rich Low_complexity Low_complexity 1 28 0 3 762 407 331 74 15 chr3 23320321 23320456 -136279327 - B1F1 SINE Alu 0 149 7 3 762 405 247 0 0 chr3 23320884 23320969 -136278814 - MTD LTR MaLR 0 419 335 4 762 215 158 52 17 chr3 23320976 23321034 -136278749 + (CTATA)n Simple_repeat Simple_repeat 2 61 0 4 762 664 290 43 5 chr3 23321036 23321223 -136278560 - MTD LTR MaLR -108 311 118 4 762 726 224 103 83 chr3 23321220 23321532 -136278251 - MTC-int LTR MaLR -936 322 5 4 762 35 24 0 0 chr3 23321642 23321684 -136278099 + AT_rich Low_complexity Low_complexity 1 42 0 4 762 1625 326 60 94 chr3 23321933 23322990 -136276793 - Lx8 LINE L1 -155 7318 6298 4 762 415 250 93 8 chr3 23323015 23323144 -136276639 + ORR1B2-int LTR MaLR 538 677 -832 4 762 189 107 0 0 chr3 23323145 23323173 -136276610 + (TTTTC)n Simple_repeat Simple_repeat 3 30 0 4 762 575 238 23 16 chr3 23323173 23323301 -136276482 + B1_Mus1 SINE Alu 19 147 -1 4 762 458 275 6 0 chr3 23323301 23323351 -136276432 + ORR1B2-int LTR MaLR 665 843 -666 4 762 2631 190 27 25 chr3 23323351 23323902 -136275881 + ORR1B2-int LTR MaLR 958 1509 0 4 762 1133 213 60 21 chr3 23323905 23324140 -136275643 + ORR1B2 LTR MaLR 7 250 -117 4 762 299 231 179 19 chr3 23324435 23324541 -136275242 + RMER21A LTR ERV1 560 682 -265 4 762 489 208 20 0 chr3 23324601 23324702 -136275081 + ORR1B2 LTR MaLR 253 355 -12 4 762 276 30 0 0 chr3 23324762 23324795 -136274988 + (TC)n Simple_repeat Simple_repeat 2 34 0 4 762 276 170 0 0 chr3 23324798 23324851 -136274932 + (TG)n Simple_repeat Simple_repeat 2 54 0 4 762 405 0 0 0 chr3 23324851 23324896 -136274887 + (GA)n Simple_repeat Simple_repeat 1 45 0 4 762 1880 34 4 4 chr3 23325171 23325406 -136274377 + L1Md_F3 LINE L1 6350 6584 0 4 762 2613 120 5 41 chr3 23325954 23326372 -136273411 + RLTR9D LTR ERVK 1 403 0 4 762 327 49 0 0 chr3 23326415 23326456 -136273327 + (CATA)n Simple_repeat Simple_repeat 2 42 0 4 762 273 355 24 0 chr3 23326564 23326688 -136273095 + RMER15 LTR ERVL 392 518 -57 4 762 675 240 70 45 chr3 23326936 23327137 -136272646 + B3 SINE B2 3 208 -8 4 762 239 0 0 31 chr3 23327137 23327169 -136272614 + (TAA)n Simple_repeat Simple_repeat 2 32 0 4 762 307 320 128 1 chr3 23327304 23327406 -136272377 + B1F SINE Alu 1 111 -6 4 762 3351 215 32 56 chr3 23328201 23328461 -136271322 + RLTR40 LTR ERVK 1 240 -577 4 762 1557 190 39 9 chr3 23328461 23328791 -136270992 - Lx3C LINE L1 -2 6974 6635 4 762 3351 215 32 56 chr3 23328791 23329354 -136270429 + RLTR40 LTR ERVK 241 804 -13 4 762 268 274 0 0 chr3 23329472 23329545 -136270238 + GA-rich Low_complexity Low_complexity 2 74 0 4 763 21 36 0 0 chr3 23330961 23330989 -136268794 + AT_rich Low_complexity Low_complexity 1 28 0 4 763 795 291 201 3 chr3 23331621 23331945 -136267838 - MTD LTR MaLR -31 388 1 4 763 579 322 39 17 chr3 23332125 23332305 -136267478 + B4A SINE B4 34 217 -75 4 763 758 139 0 7 chr3 23332367 23332519 -136267264 + (TAGA)n Simple_repeat Simple_repeat 2 152 0 4 763 1302 300 64 28 chr3 23334403 23335041 -136264742 + L1MA6 LINE L1 5341 6001 -299 4 763 261 215 0 0 chr3 23336055 23336120 -136263663 - L1_Mur2 LINE L1 -1224 4653 4589 4 763 7203 144 59 71 chr3 23336121 23337431 -136262352 + Lx3C LINE L1 5461 6757 -219 4 763 513 0 0 0 chr3 23337431 23337488 -136262295 + (CA)n Simple_repeat Simple_repeat 2 58 0 4 763 7203 135 64 62 chr3 23337488 23337683 -136262100 + Lx3C LINE L1 6758 6973 -3 4 763 1078 86 0 0 chr3 23338528 23338668 -136261115 + B1_Mus1 SINE Alu 2 141 -7 4 763 540 0 0 0 chr3 23338670 23338730 -136261053 + (CAAAA)n Simple_repeat Simple_repeat 3 62 0 4 763 1048 297 51 19 chr3 23338957 23339372 -136260411 - Lx8 LINE L1 -238 7235 6808 4 763 523 301 16 11 chr3 23339535 23339695 -136260088 - ID_B1 SINE B4 0 224 68 4 763 571 312 56 25 chr3 23339929 23340126 -136259657 - B3A SINE B2 -5 211 9 4 763 23 0 0 0 chr3 23340129 23340152 -136259631 + AT_rich Low_complexity Low_complexity 1 23 0 4 763 22 0 0 0 chr3 23340782 23340804 -136258979 + AT_rich Low_complexity Low_complexity 1 22 0 4 763 221 20 74 56 chr3 23342250 23342304 -136257479 + (CAAA)n Simple_repeat Simple_repeat 2 56 0 4 763 683 298 106 67 chr3 23342492 23342640 -136257143 - Lx8 LINE L1 -1141 6332 6183 4 763 537 58 0 0 chr3 23342640 23342709 -136257074 + (CATA)n Simple_repeat Simple_repeat 3 71 0 4 763 683 294 108 59 chr3 23342709 23343441 -136256342 - Lx8 LINE L1 -1291 6182 5414 4 763 716 253 40 10 chr3 23343541 23343745 -136256038 - ERVL-int LTR ERVL -924 4833 4614 4 763 14502 180 92 67 chr3 23343746 23348460 -136251323 - Lx LINE L1 -663 5991 1173 4 763 324 70 0 0 chr3 23348460 23348503 -136251280 + (TG)n Simple_repeat Simple_repeat 2 44 0 4 763 2638 195 9 11 chr3 23348503 23349051 -136250732 - Lx LINE L1 -5411 1205 675 4 763 547 339 136 52 chr3 23349506 23350283 -136249500 + L1M5 LINE L1 3023 3865 -2281 4 763 385 261 69 0 chr3 23350403 23350533 -136249250 + L1MC LINE L1 4065 4203 -1943 4 763 481 329 37 25 chr3 23351652 23351814 -136247969 + RSINE1 SINE B4 2 165 0 4 763 5493 49 6 11 chr3 23351892 23352599 -136247184 + L1Md_F2 LINE L1 5880 6582 0 4 763 3897 86 6 7 chr3 23354163 23354704 -136245079 + L1Md_F2 LINE L1 6042 6581 -1 4 763 967 252 7 54 chr3 23354779 23355073 -136244710 - Lx2B LINE L1 0 7000 6721 4 763 2330 97 28 8 chr3 23357530 23357883 -136241900 + Lx3_Mus LINE L1 6650 7009 0 4 763 3061 78 0 5 chr3 23358818 23359216 -136240567 + MTA_Mm LTR MaLR 1 396 0 4 763 347 233 149 8 chr3 23359321 23359455 -136240328 - Lx7 LINE L1 -341 7355 7203 4 763 393 284 35 41 chr3 23360657 23360826 -136238957 - RLTR6-int LTR ERV1 -189 7589 7422 4 763 797 297 40 16 chr3 23361439 23361770 -136238013 - RLTR6-int LTR ERV1 -2454 5324 4931 4 763 265 128 419 10 chr3 23361782 23361859 -136237924 + MTC-int LTR MaLR 463 558 -700 4 763 38559 35 3 7 chr3 23362062 23368308 -136231475 - L1Md_T LINE L1 0 6582 422 4 763 289 323 81 41 chr3 23368308 23368506 -136231277 - RLTR6-int LTR ERV1 -1392 3671 3482 4 763 1416 357 73 64 chr3 23368983 23371858 -136227925 - RLTR4_MM-int LTR ERV1 -3406 4195 1401 4 763 25 31 0 0 chr3 23373515 23373547 -136226236 + AT_rich Low_complexity Low_complexity 1 32 0 4 763 27 0 0 0 chr3 23373589 23373616 -136226167 + AT_rich Low_complexity Low_complexity 1 27 0 4 763 1833 224 24 29 chr3 23373616 23374029 -136225754 - Lx5 LINE L1 -11 7039 6629 4 763 944 98 12 12 chr3 23374306 23374472 -136225311 + (TTCC)n Simple_repeat Simple_repeat 3 168 0 4 763 1049 262 12 0 chr3 23375221 23375469 -136224314 + Lx6 LINE L1 7202 7452 -8 4 763 38 61 0 0 chr3 23375469 23375535 -136224248 + AT_rich Low_complexity Low_complexity 1 66 0 4 763 359 290 41 46 chr3 23375548 23375743 -136224040 - B3A SINE B2 -2 196 3 4 763 250 222 95 0 chr3 23376025 23376088 -136223695 - MER34 LTR ERV1 -471 71 3 4 763 311 374 55 19 chr3 23376231 23376542 -136223241 + L1M4 LINE L1 3945 4266 -1880 4 763 1656 245 37 32 chr3 23376584 23376926 -136222857 - MTD LTR MaLR -16 403 58 4 763 5058 72 20 26 chr3 23376926 23377627 -136222156 + L1Md_F2 LINE L1 5884 6580 -2 4 763 1656 245 37 32 chr3 23377627 23377685 -136222098 - MTD LTR MaLR -362 57 1 4 763 381 325 61 49 chr3 23377696 23378207 -136221576 + L1M4 LINE L1 4317 4833 -1313 4 763 1428 328 66 28 chr3 23378231 23378367 -136221416 - Lx8 LINE L1 0 7473 7336 4 763 297 0 0 0 chr3 23378367 23378400 -136221383 + (CAAAA)n Simple_repeat Simple_repeat 2 34 0 4 763 1428 328 66 28 chr3 23378400 23378946 -136220837 - Lx8 LINE L1 -138 7335 6766 4 763 268 372 44 0 chr3 23379001 23379138 -136220645 - Lx8 LINE L1 -802 6671 6529 4 763 1368 113 7 3 chr3 23379141 23379352 -136220431 - L1_Mm LINE L1 -1004 5136 4898 4 763 475 60 12 24 chr3 23379354 23379439 -136220344 + L1Md_F2 LINE L1 6499 6582 0 4 763 657 345 54 30 chr3 23379439 23379931 -136219852 - Lx8 LINE L1 -1087 6557 5997 4 763 2828 51 11 0 chr3 23380281 23380653 -136219130 + RLTR10 LTR ERVK 1 376 -14 4 763 606 119 34 8 chr3 23381083 23381202 -136218581 + GA-rich Low_complexity Low_complexity 3 124 0 4 763 12155 192 66 40 chr3 23381592 23383113 -136216670 - Lx4B LINE L1 -6 7052 5421 4 763 240 59 0 0 chr3 23383113 23383147 -136216636 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 4 763 12155 191 25 105 chr3 23383147 23383928 -136215855 - Lx4B LINE L1 -457 5420 4630 4 763 252 0 0 0 chr3 23383928 23383956 -136215827 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 4 763 12155 191 25 105 chr3 23383956 23386177 -136213606 - Lx4B LINE L1 -1248 4629 2710 4 763 714 12 0 0 chr3 23387408 23387491 -136212292 + (GAAA)n Simple_repeat Simple_repeat 4 86 0 4 763 3563 50 0 0 chr3 23388815 23389255 -136210528 - L1Md_F2 LINE L1 -12 6570 6131 4 763 6532 55 1 5 chr3 23389258 23390081 -136209702 + L1Md_F2 LINE L1 5747 6566 -16 4 763 5552 62 84 0 chr3 23390083 23390829 -136208954 + L1Md_F2 LINE L1 5032 5840 -43 4 763 243 91 0 0 chr3 23390819 23390852 -136208931 + L1Md_F2 LINE L1 6099 6131 -451 4 763 243 0 0 0 chr3 23391167 23391194 -136208589 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 4 763 21 57 0 0 chr3 23391446 23391481 -136208302 + AT_rich Low_complexity Low_complexity 1 35 0 4 763 25 0 0 0 chr3 23391654 23391679 -136208104 + AT_rich Low_complexity Low_complexity 1 25 0 4 763 255 318 18 0 chr3 23391800 23391910 -136207873 - L1MA4A LINE L1 -371 5932 5821 4 763 369 0 0 0 chr3 23391965 23392006 -136207777 + (TC)n Simple_repeat Simple_repeat 2 42 0 4 763 312 120 0 0 chr3 23392006 23392055 -136207728 + (TG)n Simple_repeat Simple_repeat 1 50 0 4 763 269 26 0 26 chr3 23392751 23392790 -136206993 + (TTTTG)n Simple_repeat Simple_repeat 3 40 0 4 763 859 94 16 0 chr3 23392811 23392938 -136206845 - B1_Mus1 SINE Alu -1 147 19 4 763 310 241 10 94 chr3 23392854 23392950 -136206833 - MT2B LTR ERVL -344 257 170 4 763 9076 65 3 2 chr3 23393582 23395430 -136204353 - L1Md_F2 LINE L1 -12 6570 4721 4 763 13565 179 92 32 chr3 23395420 23399535 -136200248 + Lx5 LINE L1 2701 7046 -4 4 763 3524 60 0 9 chr3 23399616 23400069 -136199714 - L1_Mus1 LINE L1 -4 6563 6115 4 763 21 57 0 0 chr3 23400820 23400855 -136198928 + AT_rich Low_complexity Low_complexity 1 35 0 4 763 846 316 3 17 chr3 23400994 23401287 -136198496 - B4A SINE B4 0 292 4 4 763 302 318 48 11 chr3 23401691 23401872 -136197911 - MLT1B LTR MaLR -3 464 270 4 763 393 22 0 0 chr3 23402200 23402246 -136197537 + (TG)n Simple_repeat Simple_repeat 1 46 0 4 763 616 335 0 0 chr3 23402516 23402686 -136197097 + B3 SINE B2 6 175 -41 4 763 35795 65 6 3 chr3 23402689 23408893 -136190890 - L1Md_F2 LINE L1 -6 6579 262 4 763 25 0 0 0 chr3 23409036 23409061 -136190722 + AT_rich Low_complexity Low_complexity 1 25 0 4 763 28 48 0 0 chr3 23409278 23409320 -136190463 + AT_rich Low_complexity Low_complexity 1 42 0 5 763 396 155 0 0 chr3 23409329 23409400 -136190383 + (TG)n Simple_repeat Simple_repeat 1 71 0 5 763 594 311 11 0 chr3 23409401 23409581 -136190202 - B3A SINE B2 -15 183 2 5 763 282 29 0 0 chr3 23409603 23409638 -136190145 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 5 763 417 360 109 36 chr3 23410600 23410874 -136188909 + MLT1F2 LTR MaLR 263 556 -4 5 763 200 41 19 75 chr3 23411222 23411275 -136188508 + (TTTG)n Simple_repeat Simple_repeat 2 51 0 5 763 7402 84 5 1 chr3 23411281 23412268 -136187515 - L1_Mus3 LINE L1 -1 6637 5647 5 763 2157 141 14 120 chr3 23412274 23412758 -136187025 + L1_Mus3 LINE L1 5214 5646 -237 5 763 27 29 0 0 chr3 23413436 23413470 -136186313 + AT_rich Low_complexity Low_complexity 1 34 0 5 763 541 295 52 57 chr3 23413860 23414054 -136185729 - B3A SINE B2 -2 196 4 5 763 565 347 156 3 chr3 23414191 23414486 -136185297 - Lx8 LINE L1 -194 7279 6940 5 763 253 180 60 0 chr3 23414508 23414558 -136185225 - Lx8 LINE L1 -639 6834 6782 5 763 243 385 108 74 chr3 23414565 23414815 -136184968 + L2a LINE L2 2562 2814 -605 5 763 1080 95 0 26 chr3 23414815 23414966 -136184817 + B1_Mus2 SINE Alu 1 147 0 5 763 322 388 80 49 chr3 23414966 23415506 -136184277 + L2a LINE L2 2815 3379 -47 5 763 1190 42 0 0 chr3 23415769 23415911 -136183872 + B1_Mm SINE Alu 1 142 -5 5 763 22 0 0 0 chr3 23416030 23416052 -136183731 + AT_rich Low_complexity Low_complexity 1 22 0 5 763 1718 240 8 177 chr3 23416468 23417203 -136182580 - RMER19C LTR ERVK 0 611 1 5 763 317 43 21 0 chr3 23417275 23417322 -136182461 + (TTTTTG)n Simple_repeat Simple_repeat 1 48 0 5 763 227 307 80 0 chr3 23417322 23417397 -136182386 - ID4_ SINE ID -1 82 2 5 763 286 203 0 0 chr3 23419837 23419896 -136179887 + ID_B1 SINE B4 166 224 0 5 763 225 315 33 33 chr3 23420008 23420100 -136179683 + L1MEc LINE L1 392 483 -5917 5 763 204 67 0 0 chr3 23420173 23420203 -136179580 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 5 763 483 207 0 0 chr3 23420402 23420489 -136179294 + L1_Mur3 LINE L1 41 127 -7601 5 763 3100 244 26 6 chr3 23420534 23421374 -136178409 - Lx4B LINE L1 -5 6995 6129 5 763 1912 161 28 3 chr3 23421375 23421709 -136178074 + Lx3_Mus LINE L1 6646 6988 -21 5 763 234 0 0 0 chr3 23421709 23421735 -136178048 + (TTAA)n Simple_repeat Simple_repeat 1 26 0 5 763 1912 161 28 3 chr3 23421735 23421754 -136178029 + Lx3_Mus LINE L1 6989 7007 -2 5 763 4669 204 41 25 chr3 23421761 23422939 -136176844 + L1_Mur3 LINE L1 1208 2404 -3476 5 763 2201 254 40 65 chr3 23422964 23423667 -136176116 + Lx6 LINE L1 6202 6886 -574 5 763 1260 68 0 0 chr3 23423670 23423902 -136175881 + (CA)n Simple_repeat Simple_repeat 1 232 0 5 763 504 0 0 0 chr3 23423902 23423957 -136175826 + (GA)n Simple_repeat Simple_repeat 2 57 0 5 763 22 0 0 0 chr3 23424270 23424292 -136175491 + AT_rich Low_complexity Low_complexity 1 22 0 5 763 1415 80 0 0 chr3 23424688 23424876 -136174907 - L1_Mus1 LINE L1 -1 6566 6379 5 763 1399 83 0 5 chr3 23425545 23425731 -136174052 - L1_Mus1 LINE L1 -156 6411 6226 5 763 1089 87 0 42 chr3 23425731 23425899 -136173884 + L1_Mus1 LINE L1 6406 6566 -1 5 763 247 173 13 26 chr3 23427474 23427551 -136172232 + (CATA)n Simple_repeat Simple_repeat 4 79 0 5 763 21 36 0 0 chr3 23427825 23427853 -136171930 + AT_rich Low_complexity Low_complexity 1 28 0 5 763 299 250 47 23 chr3 23427864 23427950 -136171833 + PB1D10 SINE Alu 24 111 -6 5 763 273 279 10 41 chr3 23428073 23428170 -136171613 - L1M5 LINE L1 -1137 5009 4916 5 763 1625 299 109 22 chr3 23428583 23429315 -136170468 + Lx8 LINE L1 6660 7455 -18 5 763 210 37 0 0 chr3 23429568 23429595 -136170188 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 5 763 4001 278 44 48 chr3 23429847 23431469 -136168314 + RMER1C Other Other 28 1341 -1 5 763 419 186 52 0 chr3 23431480 23431577 -136168206 - L1MA7 LINE L1 -21 6270 6169 5 763 252 0 0 0 chr3 23431581 23431609 -136168174 + (TG)n Simple_repeat Simple_repeat 1 28 0 5 763 431 285 143 78 chr3 23431702 23431995 -136167788 - ORR1E LTR MaLR -47 312 1 5 763 823 307 89 53 chr3 23432552 23432834 -136166949 + Tigger7 DNA MER2_type 39 332 -2159 5 763 4130 41 0 0 chr3 23432834 23433323 -136166460 + L1Md_T LINE L1 6092 6580 -2 5 763 823 307 89 53 chr3 23433323 23433477 -136166306 + Tigger7 DNA MER2_type 333 491 -2000 5 763 395 309 8 31 chr3 23433650 23433777 -136166006 + MTE2a LTR MaLR 3 126 -253 5 763 289 291 9 46 chr3 23433793 23433901 -136165882 + MTE2a LTR MaLR 273 376 -3 5 763 501 326 122 25 chr3 23435200 23435445 -136164338 + Lx8 LINE L1 6241 6509 -964 5 763 27 0 0 0 chr3 23435751 23435778 -136164005 + AT_rich Low_complexity Low_complexity 1 27 0 5 763 1271 286 58 2 chr3 23435786 23436196 -136163587 + L1_Mur3 LINE L1 88 520 -7208 5 763 271 268 0 53 chr3 23436194 23436269 -136163514 + L1_Mur3 LINE L1 630 700 -7028 5 763 21783 22 2 0 chr3 23436264 23438885 -136160898 - L1_Mm LINE L1 -2026 3857 1232 5 763 3127 14 0 0 chr3 23438884 23439241 -136160542 + L1Md_A LINE L1 5229 5585 -298 5 763 8274 41 0 0 chr3 23439242 23440238 -136159545 + L1Md_A LINE L1 5587 6582 0 5 763 740 69 0 29 chr3 23440240 23440345 -136159438 + RLTR1B LTR ERV1 335 436 -76 5 763 195 42 0 0 chr3 23440391 23440415 -136159368 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 5 763 2586 207 41 8 chr3 23440417 23441140 -136158643 + L1_Mur3 LINE L1 699 1445 -4435 5 763 240 248 177 41 chr3 23441329 23441476 -136158307 - RLTR11A LTR ERVK -235 293 127 5 763 264 0 0 0 chr3 23441478 23441509 -136158274 + MTA_Mm LTR MaLR 377 407 0 5 763 7412 57 103 3 chr3 23441509 23442507 -136157276 + MTA_Mm-int LTR MaLR 1 1098 0 5 763 2990 41 5 88 chr3 23442507 23442698 -136157085 + MTA_Mm LTR MaLR 1 192 -204 5 763 690 40 0 0 chr3 23442698 23442797 -136156986 + L1Md_F3 LINE L1 6470 6568 -16 5 763 2990 41 5 88 chr3 23442797 23443037 -136156746 + MTA_Mm LTR MaLR 193 396 0 5 763 387 52 0 0 chr3 23443049 23443107 -136156676 - Lx3B LINE L1 -877 6096 6039 5 763 1557 167 11 7 chr3 23443106 23443378 -136156405 - L1_Mur1 LINE L1 -124 5762 5490 5 763 6851 244 63 185 chr3 23443487 23444061 -136155722 + L1_Mur3 LINE L1 1466 2050 -3827 5 763 450 114 0 0 chr3 23444061 23444131 -136155652 + (CA)n Simple_repeat Simple_repeat 2 71 0 5 763 6851 244 63 185 chr3 23444131 23444355 -136155428 + L1_Mur3 LINE L1 2051 2235 -3642 5 763 306 0 0 0 chr3 23444355 23444389 -136155394 + (CA)n Simple_repeat Simple_repeat 1 34 0 5 763 6851 244 63 185 chr3 23444389 23445092 -136154691 + L1_Mur3 LINE L1 2236 2878 -2999 5 763 4707 76 0 16 chr3 23445092 23445734 -136154049 + L1Md_F2 LINE L1 5948 6579 -3 5 763 6851 244 63 185 chr3 23445734 23445839 -136153944 + L1_Mur3 LINE L1 2879 2985 -2892 5 763 309 51 0 0 chr3 23445839 23445878 -136153905 + (TA)n Simple_repeat Simple_repeat 2 40 0 5 763 6851 244 63 185 chr3 23445878 23446282 -136153501 + L1_Mur3 LINE L1 2986 3311 -2566 5 763 1003 129 0 7 chr3 23446282 23446430 -136153353 - B1_Mus1 SINE Alu -1 147 1 5 763 8025 221 82 80 chr3 23446430 23448219 -136151564 + L1_Mur3 LINE L1 3312 4632 -1245 5 763 405 0 0 0 chr3 23448219 23448264 -136151519 + (CA)n Simple_repeat Simple_repeat 2 46 0 5 763 8025 212 96 8 chr3 23448264 23449240 -136150543 + L1_Mur3 LINE L1 4615 5708 -456 5 763 27062 152 63 22 chr3 23449710 23452035 -136147748 + L1_Mur1 LINE L1 211 2643 -3243 5 763 234 62 0 0 chr3 23452035 23452067 -136147716 + (CAA)n Simple_repeat Simple_repeat 2 33 0 5 763 27062 104 15 12 chr3 23452067 23454884 -136144899 + L1_Mur1 LINE L1 2644 5456 -430 5 763 1344 145 34 27 chr3 23454884 23455146 -136144637 + Lx3_Mus LINE L1 6746 7009 0 5 763 1107 303 170 91 chr3 23455250 23456099 -136143684 + Lx6 LINE L1 6243 7430 -30 5 763 1029 274 68 41 chr3 23456427 23456796 -136142987 + MTE2b LTR MaLR 1 379 0 5 763 1075 325 11 35 chr3 23456801 23457177 -136142606 + MTE2b-int LTR MaLR 8 374 -1206 5 763 683 351 49 35 chr3 23457159 23457445 -136142338 + MTE2b-int LTR MaLR 482 771 -809 5 763 260 362 110 28 chr3 23457998 23458041 -136141742 + B4 SINE B4 43 97 -195 5 763 471 229 61 26 chr3 23458041 23458154 -136141629 + B1_Mus1 SINE Alu 1 117 -31 5 763 285 329 18 49 chr3 23458855 23459018 -136140765 + MLT1H LTR MaLR 383 540 -9 5 763 27 62 0 0 chr3 23459594 23459642 -136140141 + AT_rich Low_complexity Low_complexity 1 48 0 5 763 492 254 53 0 chr3 23460961 23461075 -136138708 + RSINE1 SINE B4 8 127 -38 5 764 253 288 55 0 chr3 23461996 23462069 -136137714 + MLT1H2 LTR MaLR 61 137 -352 5 764 1857 184 33 74 chr3 23462510 23462565 -136137218 - ORR1C1 LTR MaLR 0 378 331 5 764 375 189 11 0 chr3 23462565 23462655 -136137128 - L1Md_F2 LINE L1 0 6582 6492 5 764 1857 184 33 74 chr3 23462655 23462993 -136136790 - ORR1C1 LTR MaLR -48 330 1 5 764 36 23 0 0 chr3 23463136 23463179 -136136604 + AT_rich Low_complexity Low_complexity 1 43 0 5 764 1550 149 334 5 chr3 23463264 23463663 -136136120 + RLTR47_MM LTR ERV1 2 532 0 5 764 608 181 8 8 chr3 23463671 23463787 -136135996 + MTC LTR MaLR 3 118 -303 5 764 1392 173 215 9 chr3 23463787 23464126 -136135657 - RLTR25A LTR ERVK 0 1103 695 5 764 8686 82 6 0 chr3 23464152 23465344 -136134439 - L1Md_F2 LINE L1 -820 5063 3865 5 764 6098 78 0 1 chr3 23465345 23466344 -136133439 + L1Md_F2 LINE L1 5075 6072 -510 5 764 2460 70 3 52 chr3 23466344 23466707 -136133076 + RLTR1C LTR ERV1 1 345 -158 5 764 260 182 0 18 chr3 23466725 23466781 -136133002 - RLTR1B-int LTR ERV1 -2768 531 477 5 764 644 286 9 45 chr3 23466842 23466866 -136132917 + RLTR1D LTR ERV1 391 413 -211 5 764 237 33 0 0 chr3 23466866 23466896 -136132887 + (TTG)n Simple_repeat Simple_repeat 2 31 0 5 764 820 251 11 11 chr3 23466896 23467112 -136132671 + RLTR1D LTR ERV1 414 605 0 5 764 1482 229 123 117 chr3 23467115 23467732 -136132051 + MMERGLN-int LTR ERV1 3 623 -6933 5 764 274 182 0 18 chr3 23467846 23467902 -136131881 + MMVL30-int LTR ERV1 477 531 -2768 5 764 2434 138 10 18 chr3 23468322 23468712 -136131071 + MMVL30-int LTR ERV1 1068 1454 -2244 5 764 707 149 27 117 chr3 23468796 23469084 -136130699 + MMVL30-int LTR ERV1 961 1511 -2187 5 764 504 0 0 0 chr3 23469192 23469248 -136130535 + (GA)n Simple_repeat Simple_repeat 1 56 0 5 764 2002 102 0 42 chr3 23469365 23469672 -136130111 + L1Md_F2 LINE L1 6276 6569 -13 5 764 321 26 0 0 chr3 23469690 23469728 -136130055 + (CAAAC)n Simple_repeat Simple_repeat 3 40 0 5 764 249 119 0 0 chr3 23469728 23469770 -136130013 + (A)n Simple_repeat Simple_repeat 1 42 0 5 764 4756 122 34 21 chr3 23469814 23470619 -136129164 + MMVL30-int LTR ERV1 1513 2654 -2409 5 764 579 267 15 15 chr3 23471188 23471321 -136128462 - ETnERV2-int LTR ERVK -204 7202 7070 5 764 5010 207 42 31 chr3 23471323 23472656 -136127127 + MMVL30-int LTR ERV1 2874 4273 -790 5 764 624 39 0 0 chr3 23472712 23472789 -136126994 + RLTR1B-int LTR ERV1 3223 3299 0 5 764 2768 145 28 44 chr3 23472789 23473293 -136126490 + RLTR1C LTR ERV1 1 496 -7 5 764 3694 86 0 19 chr3 23473301 23473862 -136125921 + L1Md_F2 LINE L1 6069 6582 0 5 764 3075 177 53 34 chr3 23473868 23474493 -136125290 - RLTR25A LTR ERVK -466 637 1 5 764 1390 200 28 60 chr3 23474493 23474812 -136124971 + MTC LTR MaLR 113 421 0 5 764 557 228 272 0 chr3 23474905 23475067 -136124716 + B3 SINE B2 1 206 -10 5 764 23 0 0 0 chr3 23475477 23475500 -136124283 + AT_rich Low_complexity Low_complexity 1 23 0 5 764 375 314 117 42 chr3 23476897 23477180 -136122603 + L1_Mur3 LINE L1 5343 5646 -234 5 764 240 364 41 25 chr3 23477674 23477715 -136122068 - B3A SINE B2 -75 123 1 5 764 284 266 38 12 chr3 23477715 23477795 -136121988 - B4A SINE B4 -210 82 1 5 764 34950 45 2 3 chr3 23478416 23483641 -136116142 + L1Md_T LINE L1 275 5588 -298 5 764 8358 36 0 0 chr3 23483642 23484635 -136115148 + L1Md_T LINE L1 5590 6582 -3 5 764 300 214 24 12 chr3 23485109 23485194 -136114589 + L1M3 LINE L1 4928 5013 -1127 6 764 24 0 0 0 chr3 23485597 23485621 -136114162 + AT_rich Low_complexity Low_complexity 1 24 0 6 764 372 301 18 26 chr3 23485902 23486016 -136113767 + B4A SINE B4 2 104 -188 6 764 696 321 19 45 chr3 23486016 23486394 -136113389 + ORR1D2 LTR MaLR 3 370 0 6 764 328 374 41 118 chr3 23486394 23486594 -136113189 + B4 SINE B4 105 292 0 6 764 543 157 0 0 chr3 23486598 23486706 -136113077 + (CA)n Simple_repeat Simple_repeat 2 109 0 6 764 190 295 25 13 chr3 23487260 23487339 -136112444 + MIRb SINE MIR 109 188 -80 6 764 971 294 113 16 chr3 23487544 23487914 -136111869 - MTD LTR MaLR 0 419 14 6 764 460 340 21 0 chr3 23488388 23488529 -136111254 - RSINE1 SINE B4 -19 146 3 6 764 249 83 0 0 chr3 23488539 23488575 -136111208 + (T)n Simple_repeat Simple_repeat 1 36 0 6 764 2834 0 0 0 chr3 23488582 23488898 -136110885 - L1Md_T LINE L1 -1 6581 6266 6 764 327 333 18 0 chr3 23490149 23490263 -136109520 - Tigger5 DNA MER2_type 0 2406 2291 6 764 296 360 27 81 chr3 23490271 23490492 -136109291 - Tigger5 DNA MER2_type -2184 222 14 6 764 467 278 15 8 chr3 23490719 23490853 -136108930 - B4A SINE B4 -151 141 7 6 764 243 245 0 0 chr3 23491147 23491200 -136108583 + MTE2b LTR MaLR 9 61 -318 6 764 1102 172 0 0 chr3 23492039 23492231 -136107552 - B2_Mm2 SINE B2 -3 192 1 6 764 1131 207 161 22 chr3 23492814 23493384 -136106399 + L1_Mur2 LINE L1 834 1482 -4395 6 764 968 199 126 19 chr3 23493382 23493653 -136106130 + L1_Mur2 LINE L1 1761 2060 -3817 6 764 1447 164 44 4 chr3 23493666 23493936 -136105847 + RLTR22_Mur LTR ERVK 1 281 -1567 6 764 6020 127 61 26 chr3 23493956 23495251 -136104532 - L1_Mus3 LINE L1 0 6638 5286 6 764 12691 85 45 3 chr3 23495243 23496653 -136103130 - L1Md_F2 LINE L1 -2 6580 4917 6 764 6307 58 8 22 chr3 23496653 23497486 -136102297 + RLTR13B2 LTR ERVK 1 822 0 6 764 12691 141 24 8 chr3 23497486 23498185 -136101598 - L1Md_F2 LINE L1 -967 4916 4208 6 764 600 84 0 0 chr3 23498185 23498268 -136101515 + (TA)n Simple_repeat Simple_repeat 1 83 0 6 764 12691 141 24 8 chr3 23498268 23499405 -136100378 - L1Md_F2 LINE L1 -1676 4210 3041 6 764 2803 132 79 3 chr3 23499397 23500000 -136099783 - L1VL1 LINE L1 -2470 1228 580 6 764 2054 180 10 57 chr3 23500000 23500406 -136099377 - L1VL1 LINE L1 -5843 579 193 1 764 3298 116 11 11 chr3 23500406 23500945 -136098838 + RLTR22_Mur LTR ERVK 267 805 -1043 2 764 1280 172 29 107 chr3 23501135 23501415 -136098368 + RLTR22_Mur LTR ERVK 1591 1848 0 2 764 1750 201 42 20 chr3 23501423 23501828 -136097955 + Lx5 LINE L1 2061 2474 -3403 3 764 3792 223 109 10 chr3 23501825 23503414 -136096369 + Lx5 LINE L1 5310 7050 0 3 764 1465 256 84 66 chr3 23503908 23504335 -136095448 - RLTR18B LTR ERVK -77 435 1 4 764 881 255 150 41 chr3 23504360 23504691 -136095092 - MTD LTR MaLR -23 396 56 5 764 2608 138 12 7 chr3 23505167 23505596 -136094187 - Lx2A LINE L1 -11 6997 6567 6 764 417 39 0 0 chr3 23505789 23505840 -136093943 + (TA)n Simple_repeat Simple_repeat 1 51 0 7 764 39 92 0 0 chr3 23506053 23506162 -136093621 + AT_rich Low_complexity Low_complexity 1 109 0 8 764 1287 261 76 9 chr3 23506495 23506824 -136092959 - MTC LTR MaLR -70 351 1 9 764 2193 215 67 34 chr3 23507076 23507614 -136092169 + RMER2 LTR ERV1 1 556 -11 1 764 2009 150 11 38 chr3 23507699 23508066 -136091717 + Lx3C LINE L1 6612 6968 -8 1 764 24 0 0 0 chr3 23509673 23509697 -136090086 + AT_rich Low_complexity Low_complexity 1 24 0 1 764 316 242 101 70 chr3 23509795 23509924 -136089859 + B3A SINE B2 84 216 0 1 764 438 20 0 0 chr3 23509926 23509977 -136089806 + (TA)n Simple_repeat Simple_repeat 1 51 0 1 764 271 316 50 42 chr3 23510111 23510230 -136089553 + PB1 SINE Alu 1 120 -7 1 764 1930 196 51 124 chr3 23510844 23511415 -136088368 - RLTR24 LTR ERV1 0 529 1 1 764 234 0 0 0 chr3 23511649 23511675 -136088108 + (CA)n Simple_repeat Simple_repeat 1 26 0 1 764 325 181 24 12 chr3 23512629 23512713 -136087070 + A-rich Low_complexity Low_complexity 4 88 0 1 764 1523 217 57 20 chr3 23512739 23513143 -136086640 - MTD LTR MaLR 0 419 1 1 764 261 242 170 38 chr3 23513630 23513789 -136085994 + L1M5 LINE L1 5358 5537 -907 2 764 4167 188 45 3 chr3 23513869 23514649 -136085134 + Lx4A LINE L1 6244 7056 -2 2 764 682 271 12 6 chr3 23515925 23516085 -136083698 - RSINE1 SINE B4 -2 163 3 2 764 272 406 10 10 chr3 23516668 23516765 -136083018 - RSINE1 SINE B4 -15 150 54 2 764 486 268 132 0 chr3 23516877 23517067 -136082716 + B3 SINE B2 2 216 0 2 764 380 111 17 15 chr3 23517073 23517156 -136082627 + Lx2B LINE L1 3553 3640 -2506 2 764 6854 150 31 55 chr3 23517149 23519468 -136080315 + Lx2B LINE L1 4488 6713 -287 2 764 1968 199 58 41 chr3 23519469 23519936 -136079847 - RLTR20B2 LTR ERVK -85 475 1 2 764 2665 309 96 26 chr3 23519969 23521944 -136077839 - Lx8 LINE L1 -10 7463 5332 2 764 253 323 0 0 chr3 23522384 23522449 -136077334 + (TCTCTG)n Simple_repeat Simple_repeat 2 66 0 2 764 26 88 0 0 chr3 23522499 23522567 -136077216 + AT_rich Low_complexity Low_complexity 1 68 0 2 764 281 176 0 98 chr3 23523180 23523208 -136076575 + A-rich Low_complexity Low_complexity 1 21 0 3 764 1157 82 0 0 chr3 23523208 23523355 -136076428 + B1_Mus2 SINE Alu 1 147 0 3 764 281 176 0 98 chr3 23523355 23523408 -136076375 + A-rich Low_complexity Low_complexity 22 74 0 3 764 250 143 0 0 chr3 23523481 23523523 -136076260 - PB1D9 SINE Alu -45 75 34 3 764 24 53 0 0 chr3 23523927 23523965 -136075818 + AT_rich Low_complexity Low_complexity 1 38 0 3 764 513 58 0 0 chr3 23525359 23525428 -136074355 + (CA)n Simple_repeat Simple_repeat 2 70 0 3 764 230 130 43 0 chr3 23525435 23525481 -136074302 + (CAGAGA)n Simple_repeat Simple_repeat 6 53 0 3 764 243 114 0 0 chr3 23525489 23525533 -136074250 + (GA)n Simple_repeat Simple_repeat 2 45 0 3 764 274 333 20 20 chr3 23525779 23525880 -136073903 + B2_Mm2 SINE B2 2 102 -93 3 764 621 40 0 0 chr3 23525928 23526004 -136073779 + (CA)n Simple_repeat Simple_repeat 1 76 0 3 764 236 222 19 0 chr3 23527139 23527193 -136072590 + L1_Mur3 LINE L1 2306 2360 -3520 4 764 537 311 139 41 chr3 23527369 23528516 -136071267 + L1M2 LINE L1 2567 3825 -2318 4 764 234 62 0 0 chr3 23528529 23528561 -136071222 + (CA)n Simple_repeat Simple_repeat 1 32 0 4 764 222 176 0 0 chr3 23528597 23528648 -136071135 + (ATATG)n Simple_repeat Simple_repeat 1 51 0 4 764 386 343 80 21 chr3 23528648 23528934 -136070849 + L1_Rod LINE L1 3820 4122 -1725 4 764 3889 65 0 0 chr3 23528934 23529500 -136070283 + L1_Mus1 LINE L1 6073 6567 0 4 764 404 296 10 2 chr3 23529597 23529707 -136070076 - B3A SINE B2 -78 117 3 4 764 893 106 18 18 chr3 23529935 23530098 -136069685 + (GAAA)n Simple_repeat Simple_repeat 2 164 0 4 764 462 349 71 0 chr3 23530398 23530596 -136069187 - MER20 DNA MER1_type -5 214 3 4 764 245 328 31 39 chr3 23531324 23531451 -136068332 + RSINE1 SINE B4 18 143 -22 4 764 1473 321 59 102 chr3 23531631 23532154 -136067629 - Lx8 LINE L1 -223 7250 6706 5 764 1042 77 28 7 chr3 23532154 23532298 -136067485 + B1_Mus1 SINE Alu 2 148 0 5 764 1473 321 59 102 chr3 23532298 23532781 -136067002 - Lx8 LINE L1 -768 6705 6288 5 764 225 217 24 12 chr3 23532886 23532894 -136066889 + (TA)n Simple_repeat Simple_repeat 1 8 0 5 764 396 0 0 0 chr3 23532894 23532938 -136066845 + (TG)n Simple_repeat Simple_repeat 1 44 0 5 764 225 217 24 12 chr3 23532938 23533013 -136066770 + (TA)n Simple_repeat Simple_repeat 2 78 0 5 764 3137 220 93 39 chr3 23533015 23533811 -136065972 + RMER13B LTR ERVK 1 839 -69 5 764 3717 14 121 0 chr3 23533893 23534333 -136065450 - MT2_Mm LTR ERVL 0 493 1 5 764 222 171 0 0 chr3 23534518 23534559 -136065224 + (CAAA)n Simple_repeat Simple_repeat 2 42 0 5 764 400 346 33 6 chr3 23534560 23534743 -136065040 - Lx6 LINE L1 -140 7320 7133 5 764 990 311 151 72 chr3 23534847 23535167 -136064616 - Lx6 LINE L1 -344 7116 6743 5 764 389 67 33 0 chr3 23535167 23535227 -136064556 + (TATG)n Simple_repeat Simple_repeat 2 63 0 5 764 990 319 98 53 chr3 23535227 23535665 -136064118 - Lx6 LINE L1 -718 6742 6097 5 764 2334 218 80 3 chr3 23535668 23536112 -136063671 - L1_Mur3 LINE L1 -3989 1891 1449 6 764 426 20 0 0 chr3 23536112 23536163 -136063620 + (TG)n Simple_repeat Simple_repeat 2 52 0 6 764 2334 218 80 3 chr3 23536163 23536307 -136063476 - L1_Mur3 LINE L1 -4432 1448 1259 6 764 763 215 202 6 chr3 23536318 23536491 -136063292 - B3 SINE B2 -9 207 1 6 764 988 225 58 121 chr3 23536540 23537020 -136062763 - L1_Mur3 LINE L1 -6432 1296 847 6 764 326 258 74 52 chr3 23537615 23537750 -136062033 - L3 LINE CR1 -3370 1119 982 6 764 216 0 0 0 chr3 23538564 23538588 -136061195 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 6 764 361 76 30 0 chr3 23538600 23538666 -136061117 + (CAAAC)n Simple_repeat Simple_repeat 2 69 0 6 764 224 30 30 0 chr3 23540271 23540304 -136059479 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 6 764 312 322 130 55 chr3 23540695 23540743 -136059040 - ORR1D2 LTR MaLR -18 352 298 6 764 390 74 0 0 chr3 23540743 23540797 -136058986 + (TTTA)n Simple_repeat Simple_repeat 3 56 0 6 764 312 322 130 55 chr3 23540797 23541001 -136058782 - ORR1D2 LTR MaLR -73 297 82 6 764 246 32 0 0 chr3 23541374 23541405 -136058378 + (CA)n Simple_repeat Simple_repeat 2 32 0 6 764 593 322 44 6 chr3 23542240 23542421 -136057362 + MER5A DNA MER1_type 1 188 -1 7 764 3827 265 79 18 chr3 23542672 23544273 -136055510 + Lx6 LINE L1 17 1328 -4552 7 764 1044 93 0 0 chr3 23544273 23544412 -136055371 + B1_Mm SINE Alu 1 139 -8 7 764 2716 216 96 53 chr3 23544412 23545245 -136054538 + Lx6 LINE L1 1329 2225 -3655 7 764 879 272 78 34 chr3 23545331 23545697 -136054086 - RMER6B LTR ERVK -2 459 7 7 764 247 167 0 0 chr3 23545703 23545751 -136054032 + Lx6 LINE L1 2435 2482 -3398 7 764 4665 201 102 30 chr3 23545766 23545855 -136053928 + Lx6 LINE L1 4592 4674 -1206 7 764 1017 109 0 0 chr3 23545855 23545992 -136053791 + B1_Mus2 SINE Alu 1 137 -10 7 764 225 0 0 0 chr3 23545992 23546017 -136053766 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 7 764 4665 201 102 30 chr3 23546017 23547017 -136052766 + Lx6 LINE L1 4675 5783 -97 7 764 1146 55 7 0 chr3 23547017 23547162 -136052621 + B1_Mus1 SINE Alu 3 148 0 7 764 657 0 0 0 chr3 23547163 23547236 -136052547 + (GAAA)n Simple_repeat Simple_repeat 3 75 0 7 764 4665 202 77 46 chr3 23547236 23547384 -136052399 + Lx6 LINE L1 5784 5922 -1538 7 764 4652 159 72 33 chr3 23547384 23548330 -136051453 + RLTR13C1 LTR ERVK 1 983 0 7 764 1438 207 10 88 chr3 23548330 23548372 -136051411 + Lx6 LINE L1 5923 5956 -1504 7 764 1404 244 32 118 chr3 23548399 23548669 -136051114 + Lx6 LINE L1 6484 6753 -707 7 764 675 67 0 0 chr3 23548669 23548758 -136051025 + (GA)n Simple_repeat Simple_repeat 2 90 0 7 764 1404 244 32 118 chr3 23548758 23549053 -136050730 + Lx6 LINE L1 6754 7000 -460 7 764 296 206 54 0 chr3 23549024 23549116 -136050667 + Lx7 LINE L1 5945 6041 -1655 8 764 656 238 272 0 chr3 23549111 23549317 -136050466 + Lx7 LINE L1 6429 6690 -1006 8 764 220 127 36 0 chr3 23551712 23551767 -136048016 + A-rich Low_complexity Low_complexity 2 58 0 8 764 425 252 20 0 chr3 23551771 23551870 -136047913 + ID_B1 SINE B4 104 204 -20 8 764 342 357 0 48 chr3 23552216 23552381 -136047402 - RSINE1 SINE B4 -5 160 4 8 764 180 0 0 0 chr3 23552584 23552604 -136047179 + (TA)n Simple_repeat Simple_repeat 2 21 0 8 764 4845 139 99 2 chr3 23552604 23553475 -136046308 + RMER17B LTR ERVK 4 958 0 8 764 3291 98 10 4 chr3 23553607 23554086 -136045697 + L1_Mus3 LINE L1 6156 6637 -1 8 764 22 0 0 0 chr3 23554260 23554282 -136045501 + AT_rich Low_complexity Low_complexity 1 22 0 8 764 6399 50 16 1 chr3 23554968 23555764 -136044019 - RLTR13C2 LTR ERVK 0 808 1 8 764 242 200 15 51 chr3 23556401 23556538 -136043245 + CT-rich Low_complexity Low_complexity 5 136 0 8 764 219 230 10 39 chr3 23556557 23556661 -136043122 + CT-rich Low_complexity Low_complexity 3 103 0 8 764 252 100 0 0 chr3 23556681 23556721 -136043062 + (TCC)n Simple_repeat Simple_repeat 3 42 0 9 764 2041 188 58 13 chr3 23556817 23557285 -136042498 - Lx4B LINE L1 -630 6428 5940 9 764 1344 278 24 17 chr3 23557286 23557795 -136041988 + Lx4B LINE L1 6450 6965 -11 9 764 289 322 68 0 chr3 23557852 23557970 -136041813 + MLT1B LTR MaLR 263 388 -2 9 764 659 311 133 44 chr3 23557980 23558770 -136041013 + L1MC4a LINE L1 6783 7642 -400 9 764 279 0 0 0 chr3 23559122 23559153 -136040630 + (T)n Simple_repeat Simple_repeat 1 31 0 9 764 1160 68 0 0 chr3 23559159 23559306 -136040477 - B1_Mus2 SINE Alu 0 147 1 9 764 230 361 101 36 chr3 23559391 23559727 -136040056 + L2 LINE L2 1715 2072 -1347 9 764 220 344 176 16 chr3 23559795 23560040 -136039743 + L2 LINE L2 2243 2526 -893 9 764 254 87 0 21 chr3 23560170 23560217 -136039566 + (TTTTTG)n Simple_repeat Simple_repeat 2 47 0 9 764 551 358 121 22 chr3 23560219 23560542 -136039241 - MER88 LTR ERVL -102 362 8 9 764 28 0 0 0 chr3 23560552 23560580 -136039203 + AT_rich Low_complexity Low_complexity 1 28 0 9 764 295 295 49 66 chr3 23561014 23561257 -136038526 - RLTR15 LTR ERVK -66 293 55 1 764 1046 262 23 49 chr3 23561373 23561758 -136038025 + ORR1C1 LTR MaLR 1 375 -3 1 764 31 68 0 0 chr3 23561892 23561951 -136037832 + AT_rich Low_complexity Low_complexity 1 59 0 1 764 322 202 250 0 chr3 23562078 23562162 -136037621 + PB1D10 SINE Alu 7 111 -6 1 764 22 80 0 0 chr3 23562257 23562307 -136037476 + AT_rich Low_complexity Low_complexity 1 50 0 1 764 621 117 11 0 chr3 23563422 23563516 -136036267 + RMER19B LTR ERVK 807 901 -1 1 764 884 157 18 3 chr3 23563556 23563892 -136035891 + CT-rich Low_complexity Low_complexity 1 341 0 1 764 607 312 36 44 chr3 23563892 23564117 -136035666 - B4 SINE B4 -67 225 3 1 764 370 295 45 0 chr3 23564484 23564596 -136035187 + B4 SINE B4 114 230 -62 1 764 466 29 29 0 chr3 23566337 23566405 -136033378 + (CA)n Simple_repeat Simple_repeat 2 71 0 1 764 251 47 70 0 chr3 23567073 23567116 -136032667 + (TTTTG)n Simple_repeat Simple_repeat 5 50 0 1 764 306 175 0 0 chr3 23567330 23567410 -136032373 + T-rich Low_complexity Low_complexity 1 80 0 1 764 30 0 0 0 chr3 23567828 23567858 -136031925 + AT_rich Low_complexity Low_complexity 1 30 0 1 764 5509 141 13 17 chr3 23568167 23569067 -136030716 - Lx2 LINE L1 0 6997 6101 1 764 483 359 85 37 chr3 23569758 23570134 -136029649 - MLT2B4 LTR ERVL -51 505 112 1 764 243 211 12 62 chr3 23570159 23570240 -136029543 - L1MD3 LINE L1 -1015 6980 6904 1 764 480 324 52 97 chr3 23570364 23570408 -136029375 - ORR1E LTR MaLR -26 333 294 1 764 1445 58 5 25 chr3 23570408 23570604 -136029179 + B2_Mm1t SINE B2 1 192 -1 1 764 480 324 52 97 chr3 23570604 23570908 -136028875 - ORR1E LTR MaLR -66 293 1 1 764 1527 343 46 32 chr3 23570908 23571570 -136028213 - MTE-int LTR MaLR -53 1527 857 1 764 287 322 28 0 chr3 23571581 23571724 -136028059 + L1M2 LINE L1 5729 5875 -437 1 764 3132 41 7 53 chr3 23571811 23571831 -136027952 - MTA_Mm LTR MaLR 0 396 378 1 764 621 0 0 0 chr3 23571831 23571900 -136027883 + (TA)n Simple_repeat Simple_repeat 2 70 0 1 764 3132 41 7 53 chr3 23571900 23572294 -136027489 - MTA_Mm LTR MaLR -19 377 1 1 764 578 349 84 70 chr3 23572530 23572654 -136027129 - Lx9 LINE L1 -8 7465 7330 1 764 498 17 0 0 chr3 23572654 23572713 -136027070 + (CA)n Simple_repeat Simple_repeat 2 60 0 1 764 1196 315 45 67 chr3 23572713 23573158 -136026625 - Lx9 LINE L1 -219 7425 6863 1 764 1412 87 58 0 chr3 23573158 23573366 -136026417 + L1_Mus1 LINE L1 6348 6567 0 1 764 1196 313 43 67 chr3 23573366 23573622 -136026161 - Lx9 LINE L1 -639 7005 6765 1 764 225 336 50 16 chr3 23573794 23573915 -136025868 - L1MCa LINE L1 -6372 136 12 1 764 3906 95 19 17 chr3 23574445 23575025 -136024758 + L1_Mus3 LINE L1 6053 6633 -5 1 764 261 119 0 0 chr3 23575055 23575097 -136024686 + (TTG)n Simple_repeat Simple_repeat 1 42 0 1 764 273 273 92 83 chr3 23575196 23575316 -136024467 + B1F1 SINE Alu 2 122 -27 1 764 291 289 121 86 chr3 23575316 23575336 -136024447 + ID_B1 SINE B4 84 231 -61 1 764 31 0 0 0 chr3 23575569 23575600 -136024183 + AT_rich Low_complexity Low_complexity 1 31 0 1 764 393 321 24 30 chr3 23575643 23575807 -136023976 - RSINE1 SINE B4 0 165 3 1 764 236 284 15 0 chr3 23575852 23575919 -136023864 + ID4 SINE ID 3 70 -13 1 764 489 336 53 61 chr3 23576646 23576869 -136022914 + B4A SINE B4 1 222 -70 1 764 330 87 0 0 chr3 23576869 23576915 -136022868 + (CAAG)n Simple_repeat Simple_repeat 2 47 0 1 764 629 277 106 15 chr3 23576919 23577117 -136022666 + B3 SINE B2 1 216 0 1 764 234 312 0 21 chr3 23577205 23577300 -136022483 + (CA)n Simple_repeat Simple_repeat 2 94 0 1 764 477 156 0 0 chr3 23577308 23577404 -136022379 + Lx LINE L1 6559 6654 0 1 764 4442 195 31 34 chr3 23577404 23578315 -136021468 - RMER13B LTR ERVK 0 908 1 1 764 305 119 34 0 chr3 23578332 23578391 -136021392 + (TTATA)n Simple_repeat Simple_repeat 2 62 0 1 764 234 222 56 0 chr3 23578826 23578916 -136020867 + (TA)n Simple_repeat Simple_repeat 1 95 0 1 764 219 221 14 42 chr3 23579353 23579424 -136020359 + (TAAA)n Simple_repeat Simple_repeat 2 70 0 1 764 420 71 0 0 chr3 23581259 23581315 -136018468 + (TCTA)n Simple_repeat Simple_repeat 4 59 0 1 764 459 327 18 22 chr3 23581315 23581530 -136018253 - ID_B1 SINE B4 -8 216 1 1 764 403 278 9 0 chr3 23581937 23582052 -136017731 - L1M2 LINE L1 -679 5633 5518 1 764 737 256 15 66 chr3 23582373 23582645 -136017138 + L1M3 LINE L1 4959 5216 -924 1 764 1101 133 6 0 chr3 23582815 23582996 -136016787 + L1_Mm LINE L1 5140 5321 -562 1 764 8256 31 0 0 chr3 23582995 23584370 -136015413 - L1Md_T LINE L1 0 6582 5208 1 764 3284 50 73 20 chr3 23584370 23584821 -136014962 - IAPLTR2_Mm LTR ERVK 0 475 1 1 764 6290 60 12 18 chr3 23584823 23585657 -136014126 - IAPEz-int LTR ERVK -2 6479 5651 1 764 2606 73 3 3 chr3 23585650 23585992 -136013791 - IAPEz-int LTR ERVK -4781 1700 1359 1 764 4301 79 17 32 chr3 23585992 23586747 -136013036 - IAPEz-int LTR ERVK -5819 662 9 1 764 3426 61 34 17 chr3 23586748 23587215 -136012568 - IAPLTR2_Mm LTR ERVK 0 475 1 1 764 32779 37 0 0 chr3 23587215 23591258 -136008525 - L1Md_F LINE L1 -670 5213 1170 1 764 3956 117 190 26 chr3 23591264 23592007 -136007776 - L1Md_F LINE L1 -5411 1205 341 1 95 7587 83 5 0 chr3 23592005 23593256 -136006527 + L1_Mus1 LINE L1 5311 6567 0 1 765 312 229 0 0 chr3 23593478 23593587 -136006196 + GA-rich Low_complexity Low_complexity 2 110 0 1 765 1793 203 53 0 chr3 23594395 23594754 -136005029 - ORR1C1 LTR MaLR 0 378 1 1 765 1623 192 91 20 chr3 23594756 23594962 -136004821 - ORR1C1-int LTR MaLR -2 1507 1294 1 765 261 0 0 0 chr3 23594962 23594991 -136004792 + (TA)n Simple_repeat Simple_repeat 1 29 0 1 765 1623 192 91 20 chr3 23594991 23595193 -136004590 - ORR1C1-int LTR MaLR -216 1293 1071 1 765 305 324 26 26 chr3 23595214 23595328 -136004455 - ORR1C1-int LTR MaLR -1013 950 837 1 765 603 256 132 30 chr3 23595349 23595496 -136004287 - Lx5 LINE L1 -3 7047 6880 1 765 3906 222 21 22 chr3 23595496 23596451 -136003332 - RMER17B LTR ERVK -4 954 1 1 765 2065 245 245 24 chr3 23596451 23597021 -136002762 - Lx5 LINE L1 -171 6879 6189 1 765 2740 231 34 10 chr3 23597025 23597637 -136002146 - ORR1C1-int LTR MaLR -882 627 1 1 765 1685 195 19 111 chr3 23597637 23598053 -136001730 - ORR1C1 LTR MaLR 0 378 1 1 765 21 0 0 0 chr3 23598727 23598748 -136001035 + AT_rich Low_complexity Low_complexity 1 21 0 1 765 2911 60 39 3 chr3 23598863 23599245 -136000538 - MTA_Mm LTR MaLR 0 396 1 1 765 22 56 0 0 chr3 23600314 23600350 -135999433 + AT_rich Low_complexity Low_complexity 1 36 0 1 765 1568 107 0 0 chr3 23600491 23600715 -135999068 - MTB_Mm LTR MaLR 0 407 184 1 765 2874 59 3 11 chr3 23600715 23601089 -135998694 - L1Md_F2 LINE L1 -38 6544 6174 1 765 328 120 0 0 chr3 23601082 23601132 -135998651 + L1Md_F LINE L1 646 695 -5824 1 765 1341 88 10 25 chr3 23601136 23601334 -135998449 - MTB_Mm LTR MaLR -212 195 1 1 765 692 281 24 0 chr3 23602798 23603008 -135996775 - B3 SINE B2 -1 215 1 1 765 1013 108 6 17 chr3 23603479 23603658 -135996125 + (GGA)n Simple_repeat Simple_repeat 3 179 0 1 765 684 67 0 0 chr3 23603665 23603755 -135996028 + (GAAA)n Simple_repeat Simple_repeat 4 93 0 1 765 571 84 10 10 chr3 23604647 23604743 -135995040 + (TA)n Simple_repeat Simple_repeat 2 97 0 1 765 24 32 0 0 chr3 23604829 23604860 -135994923 + AT_rich Low_complexity Low_complexity 1 31 0 1 765 2378 58 3 0 chr3 23606586 23606896 -135992887 + IAPLTR4 LTR ERVK 1 311 -34 1 765 217 362 58 0 chr3 23607979 23608048 -135991735 + RSINE1 SINE B4 72 144 -21 1 765 405 0 0 0 chr3 23608058 23608103 -135991680 + (TA)n Simple_repeat Simple_repeat 1 45 0 1 765 727 343 88 8 chr3 23608159 23608512 -135991271 + MER68 LTR ERVL 66 446 -117 1 765 522 225 0 9 chr3 23608834 23608946 -135990837 - ORR1D1 LTR MaLR 0 374 264 1 765 991 220 55 39 chr3 23608949 23609244 -135990539 + RMER19B LTR ERVK 334 902 0 1 765 939 233 95 37 chr3 23611845 23612193 -135987590 - RLTR9A LTR ERVK 0 368 1 1 765 438 20 0 0 chr3 23612657 23612708 -135987075 + (TG)n Simple_repeat Simple_repeat 2 52 0 1 765 210 171 0 0 chr3 23613161 23613202 -135986581 + (TAA)n Simple_repeat Simple_repeat 2 42 0 1 765 24 32 0 0 chr3 23614077 23614108 -135985675 + AT_rich Low_complexity Low_complexity 1 31 0 1 765 267 354 0 47 chr3 23614328 23614414 -135985369 + RSINE1 SINE B4 82 163 -2 1 765 1026 75 0 0 chr3 23614629 23614763 -135985020 + B1_Mus2 SINE Alu 1 134 -13 1 765 242 29 29 0 chr3 23614763 23614798 -135984985 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 1 765 1815 98 0 10 chr3 23615002 23615290 -135984493 - BGLII LTR ERVK 0 421 137 1 765 774 236 335 4 chr3 23615395 23615670 -135984113 + ORR1D1 LTR MaLR 1 366 -4 1 765 731 233 18 7 chr3 23615703 23615876 -135983907 - Lx9 LINE L1 -972 6672 6360 1 765 391 358 50 8 chr3 23616096 23616266 -135983517 + B3A SINE B2 36 214 -2 1 765 362 330 0 8 chr3 23616430 23616549 -135983234 + PB1D9 SINE Alu 2 119 -1 1 765 844 101 14 0 chr3 23617313 23617451 -135982332 + (GAA)n Simple_repeat Simple_repeat 3 142 0 1 765 226 328 73 44 chr3 23618374 23618511 -135981272 + B3A SINE B2 58 198 0 1 765 317 281 36 12 chr3 23618568 23618651 -135981132 + B1_Mus2 SINE Alu 9 93 -27 1 765 200 200 18 0 chr3 23618656 23618711 -135981072 + GA-rich Low_complexity Low_complexity 4 59 0 1 765 1095 270 87 138 chr3 23619162 23619202 -135980581 + RMER1B Other Other 44 83 -983 1 765 477 0 0 0 chr3 23619202 23619255 -135980528 + (GA)n Simple_repeat Simple_repeat 1 53 0 1 765 3166 261 54 38 chr3 23619255 23620674 -135979109 + RMER1B Other Other 1 1065 -1 1 765 5994 133 59 25 chr3 23621245 23622307 -135977476 + Lx3A LINE L1 5869 6966 -15 1 765 993 17 0 0 chr3 23622309 23622424 -135977359 + (GAAA)n Simple_repeat Simple_repeat 3 117 0 1 765 28 29 0 0 chr3 23623205 23623240 -135976543 + AT_rich Low_complexity Low_complexity 1 35 0 1 765 213 118 59 0 chr3 23623331 23623382 -135976401 + T-rich Low_complexity Low_complexity 4 57 0 1 765 294 29 0 0 chr3 23623384 23623419 -135976364 + (CA)n Simple_repeat Simple_repeat 2 36 0 1 765 1744 305 109 27 chr3 23623581 23624458 -135975325 - Lx9 LINE L1 -297 7347 6399 1 765 363 157 0 0 chr3 23624543 23624613 -135975170 + (TA)n Simple_repeat Simple_repeat 1 70 0 1 765 25 75 0 0 chr3 23624614 23624667 -135975116 + AT_rich Low_complexity Low_complexity 1 53 0 1 765 454 178 11 0 chr3 23624843 23624933 -135974850 + L1_Rod LINE L1 5127 5217 -630 1 765 325 70 35 0 chr3 23624958 23625015 -135974768 + (CAAA)n Simple_repeat Simple_repeat 2 60 0 2 765 440 261 0 57 chr3 23625074 23625196 -135974587 + MT2A LTR ERVL 13 127 -406 2 765 219 114 0 0 chr3 23625206 23625241 -135974542 + (TTG)n Simple_repeat Simple_repeat 2 36 0 2 765 45 34 0 0 chr3 23625698 23625757 -135974026 + AT_rich Low_complexity Low_complexity 1 59 0 2 765 258 135 68 0 chr3 23625881 23625955 -135973828 + (CATATA)n Simple_repeat Simple_repeat 6 84 0 2 765 278 288 23 8 chr3 23626877 23627010 -135972773 + (TAGA)n Simple_repeat Simple_repeat 4 138 0 2 765 235 264 68 83 chr3 23628281 23628413 -135971370 + MLT1A LTR MaLR 2 131 -243 2 765 745 318 29 91 chr3 23628540 23628966 -135970817 - MTEa LTR MaLR -1 418 1 2 765 525 275 25 0 chr3 23628993 23629113 -135970670 + Lx8 LINE L1 7120 7242 -231 2 765 22 0 0 0 chr3 23629352 23629374 -135970409 + AT_rich Low_complexity Low_complexity 1 22 0 2 765 1087 188 56 46 chr3 23630227 23630511 -135969272 - Lx7 LINE L1 -50 7646 7360 2 765 447 204 34 0 chr3 23630665 23630905 -135968878 + (CA)n Simple_repeat Simple_repeat 1 248 0 2 765 24 0 0 0 chr3 23632609 23632633 -135967150 + AT_rich Low_complexity Low_complexity 1 24 0 2 765 233 283 171 17 chr3 23632911 23633209 -135966574 + Charlie1 DNA MER1_type 2363 2706 -75 2 765 701 327 5 0 chr3 23633231 23633433 -135966350 - B3 SINE B2 0 216 14 2 765 470 346 75 5 chr3 23633850 23634036 -135965747 + ID_B1 SINE B4 6 204 -20 2 765 477 0 0 0 chr3 23634246 23634299 -135965484 + (CA)n Simple_repeat Simple_repeat 2 54 0 2 765 401 316 121 63 chr3 23634815 23635021 -135964762 + ID_B1 SINE B4 3 220 -4 2 765 1817 132 39 13 chr3 23635637 23635945 -135963838 - L1Md_F2 LINE L1 -1 6581 6266 2 765 800 268 94 25 chr3 23635945 23636351 -135963432 + L1MDa LINE L1 1086 1519 -5114 2 765 1181 138 21 0 chr3 23636480 23636669 -135963114 + B2_Mm2 SINE B2 3 195 0 2 765 360 148 0 0 chr3 23636776 23636837 -135962946 + (TG)n Simple_repeat Simple_repeat 1 61 0 2 765 883 357 15 8 chr3 23636855 23637123 -135962660 - B4 SINE B4 -16 276 7 2 765 424 323 94 33 chr3 23637128 23637490 -135962293 + L1MDa LINE L1 1786 2169 -4464 2 765 393 308 119 8 chr3 23637665 23637799 -135961984 + RSINE1 SINE B4 4 152 -13 2 765 560 266 69 23 chr3 23637896 23638069 -135961714 + ID_B1 SINE B4 44 224 0 2 765 623 213 2 12 chr3 23638103 23638223 -135961560 + B1_Mus1 SINE Alu 3 120 -29 2 765 2578 53 0 0 chr3 23638344 23638666 -135961117 - L1Md_F3 LINE L1 -14 6570 6249 2 765 522 31 0 0 chr3 23638680 23638744 -135961039 + (CA)n Simple_repeat Simple_repeat 2 65 0 2 765 1461 269 87 78 chr3 23638766 23639396 -135960387 + RLTR26 LTR ERVK 2 637 -5 2 765 272 262 66 72 chr3 23639517 23639698 -135960085 + L1MDa LINE L1 3322 3501 -3036 2 765 272 299 132 60 chr3 23639838 23639929 -135959854 - Lx8 LINE L1 -29 7444 7327 2 765 432 51 0 0 chr3 23639929 23639988 -135959795 + (TCTCTG)n Simple_repeat Simple_repeat 2 60 0 2 765 387 0 0 0 chr3 23639990 23640033 -135959750 + (CA)n Simple_repeat Simple_repeat 1 43 0 2 765 272 299 132 60 chr3 23640033 23640187 -135959596 - Lx8 LINE L1 -147 7326 7178 2 765 229 282 38 13 chr3 23640258 23640337 -135959446 + L1MD2 LINE L1 6259 6339 -20 2 765 1194 206 156 122 chr3 23640886 23641328 -135958455 + RMER6B LTR ERVK 3 459 -2 2 765 1607 131 123 22 chr3 23643508 23643906 -135955877 + Lx3A LINE L1 5405 5899 -1082 2 765 2525 140 183 80 chr3 23643906 23644573 -135955210 + RMER17D2 LTR ERVK 1 796 -13 2 765 5983 141 46 9 chr3 23644597 23645646 -135954137 + Lx3A LINE L1 5888 6974 -7 2 765 180 0 0 0 chr3 23645715 23645735 -135954048 + (A)n Simple_repeat Simple_repeat 1 20 0 2 765 462 361 82 0 chr3 23646347 23646505 -135953278 + B3A SINE B2 1 171 -27 2 765 5950 140 5 0 chr3 23646509 23647436 -135952347 + L1_Mur1 LINE L1 4885 5816 -70 2 765 705 99 0 9 chr3 23647442 23647554 -135952229 - Lx3A LINE L1 -920 6061 5951 2 765 3637 41 2 5 chr3 23648232 23648673 -135951110 - L1Md_F3 LINE L1 -14 6570 6131 2 765 296 266 16 0 chr3 23648912 23648976 -135950807 - ID_B1 SINE B4 -65 159 95 2 765 477 254 97 0 chr3 23649208 23649342 -135950441 + B1_Mur4 SINE Alu 1 147 -3 2 765 507 17 0 0 chr3 23649353 23649413 -135950370 + (GA)n Simple_repeat Simple_repeat 2 61 0 2 765 335 145 14 0 chr3 23650713 23650782 -135949001 + (TG)n Simple_repeat Simple_repeat 2 71 0 2 765 406 233 226 30 chr3 23650816 23650984 -135948799 - B3 SINE B2 -14 202 2 2 765 1599 203 60 6 chr3 23651120 23651467 -135948316 - ORR1B2 LTR MaLR 0 367 2 2 765 1061 199 23 228 chr3 23651892 23652327 -135947456 - RLTR40 LTR ERVK -17 800 455 2 765 225 83 0 0 chr3 23652327 23652363 -135947420 + (T)n Simple_repeat Simple_repeat 1 36 0 2 765 9317 68 0 1 chr3 23652374 23653574 -135946209 - L1Md_F2 LINE L1 -45 5838 4640 2 765 3007 62 34 0 chr3 23653572 23653960 -135945823 + L1Md_F2 LINE L1 5821 6221 -361 2 765 1345 121 44 0 chr3 23653960 23654166 -135945617 + L1_Mus1 LINE L1 6353 6567 0 2 765 1517 245 56 22 chr3 23654187 23654637 -135945146 - RLTR40 LTR ERVK -351 466 2 2 765 239 79 0 26 chr3 23654910 23654949 -135944834 + (CAAAC)n Simple_repeat Simple_repeat 2 39 0 2 765 250 309 12 12 chr3 23656831 23656913 -135942870 - MLT2B4 LTR ERVL -350 206 125 2 765 311 337 0 0 chr3 23657212 23657310 -135942473 + MTE2b LTR MaLR 1 98 -281 2 765 720 322 45 79 chr3 23657341 23657671 -135942112 + MTE2a LTR MaLR 48 366 -13 2 765 195 419 74 29 chr3 23658046 23658358 -135941425 - L3 LINE CR1 -404 4085 3760 2 765 1051 275 158 3 chr3 23658663 23659010 -135940773 + MTD LTR MaLR 5 405 -14 2 765 1128 318 30 48 chr3 23659034 23659473 -135940310 + MTD-int LTR MaLR 1 431 -827 2 765 857 216 70 47 chr3 23659479 23659693 -135940090 - RMER6B LTR ERVK 0 461 243 2 765 4122 187 0 12 chr3 23659699 23660461 -135939322 - Lx2B LINE L1 -444 6556 5804 2 765 1289 72 3 0 chr3 23660456 23660636 -135939147 + Lx2A1 LINE L1 5613 5828 -505 2 765 27 0 0 0 chr3 23660636 23660663 -135939120 + AT_rich Low_complexity Low_complexity 1 27 0 2 765 1475 141 97 0 chr3 23660677 23660925 -135938858 - ORR1A3 LTR MaLR -28 298 27 2 765 1504 128 8 8 chr3 23660916 23661153 -135938630 - ORR1A3-int LTR MaLR -170 1793 1557 2 765 633 175 25 16 chr3 23661153 23661275 -135938508 - RLTR26 LTR ERVK 0 642 520 2 765 791 165 91 8 chr3 23661275 23661536 -135938247 - RLTR26 LTR ERVK -301 341 1 2 765 3186 129 24 2 chr3 23661536 23662027 -135937756 - ORR1A3-int LTR MaLR -401 1562 1061 2 765 9927 145 24 32 chr3 23662027 23664117 -135935666 - L1_Mur2 LINE L1 -2764 3113 1041 2 765 642 91 0 0 chr3 23664117 23664216 -135935567 + (TG)n Simple_repeat Simple_repeat 2 100 0 2 765 3125 172 25 30 chr3 23664216 23664549 -135935234 - L1_Mur2 LINE L1 -6046 1040 705 2 765 28 0 0 0 chr3 23664560 23664588 -135935195 + AT_rich Low_complexity Low_complexity 1 28 0 2 765 1692 241 115 76 chr3 23664608 23665425 -135934358 - RLTR19-int LTR ERVK -4845 1292 444 2 765 285 105 0 0 chr3 23665425 23665463 -135934320 - RLTR19-int LTR ERVK -5811 326 289 2 765 556 253 85 163 chr3 23666022 23666069 -135933714 - RLTR23 LTR ERV1 0 430 379 2 765 3434 18 5 5 chr3 23666069 23666465 -135933318 + MTA_Mm LTR MaLR 1 396 0 2 765 556 253 85 163 chr3 23666465 23666876 -135932907 - RLTR23 LTR ERV1 -52 378 8 2 765 3747 170 80 1 chr3 23666898 23667663 -135932120 - MYSERV6-int LTR ERVK -7776 1183 359 2 765 1001 272 24 67 chr3 23667663 23667994 -135931789 + MTC-int LTR MaLR 759 1075 -183 2 765 2089 114 0 13 chr3 23667997 23668309 -135931474 - Lx2A1 LINE L1 -1088 5920 5613 2 765 922 153 434 0 chr3 23668309 23668537 -135931246 + MTB_Mm LTR MaLR 1 327 0 2 765 4921 169 17 65 chr3 23668539 23669642 -135930141 + MTB_Mm-int LTR MaLR 1 1050 -48 2 765 7941 25 57 57 chr3 23669642 23670011 -135929772 + L1_Mm LINE L1 4499 4890 -993 2 765 225 183 46 77 chr3 23670011 23670076 -135929707 - RMER20A LTR ERVK -268 248 186 2 765 7941 25 57 57 chr3 23670076 23670729 -135929054 + L1_Mm LINE L1 4891 5585 -298 2 765 8901 10 0 0 chr3 23670730 23671726 -135928057 + L1Md_T LINE L1 5587 6582 0 2 765 320 206 0 0 chr3 23671728 23671791 -135927992 + MTB_Mm-int LTR MaLR 1196 1258 0 2 765 2642 127 2 36 chr3 23671794 23671911 -135927872 + MTB_Mm LTR MaLR 4 120 -287 2 765 3070 42 42 0 chr3 23671911 23672291 -135927492 + MTA_Mm LTR MaLR 1 396 0 2 765 2642 127 2 36 chr3 23672291 23672591 -135927192 + MTB_Mm LTR MaLR 121 407 0 2 765 5151 195 132 9 chr3 23672591 23673206 -135926577 - Lx2A1 LINE L1 -266 5617 4891 2 765 2643 23 2 248 chr3 23673206 23673723 -135926060 + RLTR10 LTR ERVK 1 390 0 2 765 5151 195 132 9 chr3 23673723 23674333 -135925450 - Lx2A1 LINE L1 -993 4890 4241 2 765 279 271 0 28 chr3 23674335 23674358 -135925425 + MTD LTR MaLR 175 196 -223 2 765 4932 169 42 16 chr3 23674358 23675345 -135924438 + Lx2A1 LINE L1 5997 7008 0 2 765 279 271 0 28 chr3 23675345 23675393 -135924390 + MTD LTR MaLR 197 244 -175 2 765 568 319 3 0 chr3 23675427 23675584 -135924199 - B3 SINE B2 -37 161 1 2 765 530 236 81 0 chr3 23675589 23675750 -135924033 + MTD-int LTR MaLR 1081 1254 -4 2 765 636 302 226 21 chr3 23675760 23676003 -135923780 + MTD LTR MaLR 5 297 -122 2 765 204 205 0 0 chr3 23676502 23676541 -135923242 + (TG)n Simple_repeat Simple_repeat 2 40 0 2 765 29 0 0 0 chr3 23677487 23677516 -135922267 + AT_rich Low_complexity Low_complexity 1 29 0 2 765 2607 23 0 0 chr3 23677774 23678073 -135921710 - L1Md_A LINE L1 -246 6336 6038 2 765 2187 4 0 0 chr3 23678073 23678318 -135921465 + L1Md_A LINE L1 6338 6582 0 2 765 429 315 65 139 chr3 23678320 23678707 -135921076 + ORR1D1 LTR MaLR 17 374 0 2 765 1091 298 47 8 chr3 23680257 23680616 -135919167 - Lx9 LINE L1 -595 7049 6677 2 765 464 194 136 0 chr3 23680634 23680737 -135919046 - B1_Mm SINE Alu -22 125 9 2 765 1220 253 73 3 chr3 23680744 23681030 -135918753 - Lx9 LINE L1 -956 6688 6383 2 765 1647 211 92 32 chr3 23681173 23681253 -135918530 - RMER6B LTR ERVK 0 461 382 2 765 324 0 0 0 chr3 23681253 23681289 -135918494 + (GA)n Simple_repeat Simple_repeat 1 36 0 2 765 1647 211 92 32 chr3 23681289 23681643 -135918140 - RMER6B LTR ERVK -80 381 3 2 765 782 144 0 193 chr3 23681646 23681895 -135917888 - MYSERV6-int LTR ERVK -1196 7763 7563 2 765 335 145 0 0 chr3 23681895 23681957 -135917826 + MYSERV6-int LTR ERVK 7006 7067 -1892 2 765 315 195 0 72 chr3 23681989 23682072 -135917711 - PB1D9 SINE Alu 0 120 44 2 765 1022 164 5 65 chr3 23682121 23682177 -135917606 + MYSERV6-int LTR ERVK 7049 7105 -1854 2 765 279 0 0 0 chr3 23682177 23682208 -135917575 + (CA)n Simple_repeat Simple_repeat 2 32 0 2 765 1022 164 5 65 chr3 23682208 23682366 -135917417 + MYSERV6-int LTR ERVK 7106 7250 -1709 2 765 1742 188 11 59 chr3 23682423 23682632 -135917151 - MYSERV6-int LTR ERVK -2160 6799 6606 2 765 213 39 0 0 chr3 23682632 23682658 -135917125 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 2 765 1742 188 11 59 chr3 23682658 23682890 -135916893 - MYSERV6-int LTR ERVK -2354 6605 6379 2 765 317 232 27 80 chr3 23682902 23682977 -135916806 - PB1D7 SINE Alu -49 71 1 2 765 620 218 22 48 chr3 23682977 23683249 -135916534 - MYSERV6-int LTR ERVK -3126 5833 5690 2 765 3445 178 32 22 chr3 23683336 23684062 -135915721 - MYSERV6-int LTR ERVK -4277 4682 3950 2 765 1162 132 29 0 chr3 23684060 23684265 -135915518 - MYSERV6-int LTR ERVK -5217 3742 3532 2 765 4168 193 43 18 chr3 23684294 23685905 -135913878 - MYSERV6-int LTR ERVK -5520 3439 1689 2 765 573 276 47 32 chr3 23685905 23686249 -135913534 - L1_Mur3 LINE L1 -1563 4317 3969 2 765 476 327 29 24 chr3 23686347 23686554 -135913229 - Lx6 LINE L1 -26 7434 7227 2 765 1343 242 63 18 chr3 23686586 23686918 -135912865 + ORR1B1 LTR MaLR 5 351 -43 2 765 705 275 56 10 chr3 23686947 23687290 -135912493 - L1_Rod LINE L1 -4317 1530 1176 2 765 547 216 7 63 chr3 23687290 23687433 -135912350 + MERVL_2A-int LTR ERVL 5554 5688 -73 3 765 459 175 8 70 chr3 23687456 23687585 -135912198 + MERVL_2A-int LTR ERVL 5641 5761 0 3 765 915 283 88 71 chr3 23687585 23688079 -135911704 + MT2B LTR ERVL 1 601 0 3 765 2275 278 95 26 chr3 23688079 23688957 -135910826 - L1_Rod LINE L1 -3394 2453 1490 3 765 1052 102 0 7 chr3 23688957 23689105 -135910678 - B1_Mus1 SINE Alu -1 147 1 3 765 2275 279 83 21 chr3 23689105 23689458 -135910325 - L1_Rod LINE L1 -4358 1489 1140 3 765 2200 114 11 17 chr3 23689546 23689895 -135909888 + L1_Mus3 LINE L1 6292 6638 0 3 765 5136 143 16 2 chr3 23690143 23691017 -135908766 - Lx LINE L1 -14 6570 5631 3 765 764 283 84 4 chr3 23691025 23691252 -135908531 - RMER12 LTR ERVK -93 1229 985 3 765 1056 109 0 0 chr3 23691259 23691406 -135908377 + B1_Mm SINE Alu 1 147 0 3 765 212 0 0 35 chr3 23691438 23691467 -135908316 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 3 765 2334 103 20 86 chr3 23691616 23692021 -135907762 + RLTR1B LTR ERV1 135 512 0 3 765 357 279 0 11 chr3 23692044 23692131 -135907652 - RMER12 LTR ERVK -408 914 829 3 765 369 62 0 0 chr3 23692134 23692182 -135907601 + (CA)n Simple_repeat Simple_repeat 2 49 0 3 765 447 19 0 0 chr3 23692187 23692239 -135907544 + (TGGA)n Simple_repeat Simple_repeat 1 52 0 3 765 2471 231 79 24 chr3 23692264 23692969 -135906814 - RMER12 LTR ERVK -578 744 1 3 765 500 308 55 33 chr3 23692979 23693254 -135906529 - L1_Rod LINE L1 -6489 683 403 3 765 886 185 129 10 chr3 23693503 23693705 -135906078 - URR1A DNA MER1_type 0 226 1 3 765 1621 115 144 59 chr3 23693852 23694193 -135905590 + RLTR47_MM LTR ERV1 69 438 -94 3 765 27 73 0 0 chr3 23694490 23694545 -135905238 + AT_rich Low_complexity Low_complexity 1 55 0 3 765 1507 226 46 0 chr3 23694729 23695057 -135904726 + ORR1B2 LTR MaLR 3 345 -22 3 765 423 307 13 0 chr3 23695554 23695704 -135904079 - L1_Mur3 LINE L1 -1583 4297 4146 3 765 826 306 46 18 chr3 23695714 23696150 -135903633 + L1_Mur3 LINE L1 3409 3856 -2024 3 765 22 0 0 0 chr3 23696982 23697004 -135902779 + AT_rich Low_complexity Low_complexity 1 22 0 3 765 30 45 0 0 chr3 23697653 23697697 -135902086 + AT_rich Low_complexity Low_complexity 1 44 0 3 765 213 121 0 0 chr3 23700228 23700261 -135899522 + (TTA)n Simple_repeat Simple_repeat 1 33 0 3 765 309 312 72 28 chr3 23700438 23700619 -135899164 - B2_Mm2 SINE B2 -6 189 1 3 765 259 291 47 46 chr3 23704547 23704680 -135895103 + MTD LTR MaLR 19 159 -262 3 765 298 270 78 20 chr3 23704731 23704833 -135894950 + MTD LTR MaLR 311 418 -1 3 765 252 0 0 0 chr3 23704836 23704864 -135894919 + (T)n Simple_repeat Simple_repeat 1 28 0 3 765 265 271 0 0 chr3 23705723 23705793 -135893990 - Lx7 LINE L1 -1787 5909 5840 3 765 240 325 35 51 chr3 23705801 23705997 -135893786 - L1M2 LINE L1 -732 5565 5375 3 765 1138 71 0 0 chr3 23705997 23706138 -135893645 + B1_Mus2 SINE Alu 2 142 -5 3 765 360 111 0 0 chr3 23706138 23706192 -135893591 + (TA)n Simple_repeat Simple_repeat 2 55 0 3 765 229 325 35 51 chr3 23706192 23706250 -135893533 - L1M2 LINE L1 -923 5374 5315 3 765 317 268 163 12 chr3 23706264 23706430 -135893353 - L1M2 LINE L1 -863 5280 5090 3 765 4166 209 27 1 chr3 23707042 23707862 -135891921 - Lx2 LINE L1 -14 6983 6143 3 765 2214 157 31 0 chr3 23707862 23708245 -135891538 + Lx2 LINE L1 5739 6133 -864 3 765 24 53 0 0 chr3 23708757 23708795 -135890988 + AT_rich Low_complexity Low_complexity 1 38 0 3 765 4418 168 73 1 chr3 23711505 23712311 -135887472 - Lx2B LINE L1 -4 6996 6133 3 765 6560 175 22 0 chr3 23712311 23713584 -135886199 - L1_Mur1 LINE L1 -1154 4732 3432 3 765 274 197 96 0 chr3 23713581 23713694 -135886089 - L1_Mur1 LINE L1 -6485 499 375 3 765 243 226 0 0 chr3 23713841 23713894 -135885889 - L1_Mur1 LINE L1 -6231 753 701 3 765 522 0 0 0 chr3 23713894 23713952 -135885831 + (GA)n Simple_repeat Simple_repeat 1 58 0 3 765 327 346 68 0 chr3 23714196 23714329 -135885454 + MLT1H LTR MaLR 408 549 0 3 765 238 386 84 32 chr3 23714619 23714868 -135884915 + MLT1A LTR MaLR 91 352 -22 3 765 935 303 32 109 chr3 23715410 23715821 -135883962 + MTEa LTR MaLR 1 379 0 3 765 1799 60 4 0 chr3 23716080 23716314 -135883469 - L1Md_F2 LINE L1 0 6582 6348 3 765 904 120 0 0 chr3 23716363 23716496 -135883287 + B1_Mus1 SINE Alu 1 133 -15 3 765 507 263 91 100 chr3 23716503 23716755 -135883028 + RLTR11A LTR ERVK 202 456 -72 3 765 354 23 0 0 chr3 23716755 23716798 -135882985 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 765 507 263 91 100 chr3 23716798 23716875 -135882908 + RLTR11A LTR ERVK 457 528 0 3 765 501 309 33 13 chr3 23716875 23717023 -135882760 - MTEa LTR MaLR -228 151 1 3 765 268 281 57 19 chr3 23717111 23717216 -135882567 - MTD LTR MaLR -18 403 295 3 765 642 293 20 39 chr3 23717218 23717411 -135882372 + ORR1D1 LTR MaLR 2 222 -137 3 765 329 102 0 17 chr3 23717411 23717471 -135882312 + (CA)n Simple_repeat Simple_repeat 1 59 0 3 765 556 323 134 34 chr3 23717471 23717598 -135882185 + ORR1D1 LTR MaLR 223 353 -6 3 765 1327 228 32 11 chr3 23717598 23717882 -135881901 - MTD LTR MaLR -129 290 1 3 765 374 311 89 64 chr3 23718219 23718501 -135881282 + B4A SINE B4 2 290 -2 3 765 257 369 56 40 chr3 23718703 23719025 -135880758 + Tigger13a DNA MER2_type 295 621 -150 3 765 328 310 14 14 chr3 23720459 23720606 -135879177 + (CATATA)n Simple_repeat Simple_repeat 2 148 0 3 765 7547 156 19 3 chr3 23721000 23722242 -135877541 + Lx3C LINE L1 5714 6974 -2 3 765 640 243 36 51 chr3 23722323 23722518 -135877265 + B2_Mm2 SINE B2 1 192 -3 3 765 602 354 71 46 chr3 23722642 23723119 -135876664 + MER34 LTR ERV1 53 541 -1 3 766 2580 239 83 59 chr3 23725917 23726949 -135872834 + RMER12B LTR ERVK 1 988 -334 3 766 276 279 0 0 chr3 23726949 23727071 -135872712 + (TA)n Simple_repeat Simple_repeat 2 123 0 3 766 721 293 79 105 chr3 23727103 23727650 -135872133 + RLTR21 LTR ERVK 745 1568 -4 3 766 778 299 102 5 chr3 23727801 23728055 -135871728 - B4A SINE B4 -1 291 2 3 766 1537 158 21 14 chr3 23728338 23728627 -135871156 + Lx2 LINE L1 6706 6996 -1 3 766 28 0 0 0 chr3 23729210 23729238 -135870545 + AT_rich Low_complexity Low_complexity 1 28 0 3 766 269 327 74 0 chr3 23729502 23729664 -135870119 - Lx7 LINE L1 -1788 5908 5735 3 766 310 287 109 50 chr3 23729804 23730108 -135869675 - MER33 DNA MER1_type 0 324 1 3 766 262 311 0 13 chr3 23730645 23730720 -135869063 - ID2 SINE ID -6 77 4 3 766 241 312 53 44 chr3 23731804 23731918 -135867865 + MLT1A1 LTR MaLR 287 401 -7 3 766 27 73 0 0 chr3 23732148 23732203 -135867580 + AT_rich Low_complexity Low_complexity 1 55 0 3 766 629 226 22 8 chr3 23732232 23732366 -135867417 - RMER5 LTR ERV1 -30 504 369 3 766 304 271 106 0 chr3 23732396 23732481 -135867302 - RMER5 LTR ERV1 -221 313 220 3 766 250 410 73 45 chr3 23732539 23732658 -135867125 - Tigger7 DNA MER2_type -2211 280 153 3 766 5705 62 25 4 chr3 23732658 23733416 -135866367 + L1Md_F2 LINE L1 5809 6582 0 3 766 250 410 73 45 chr3 23733416 23733516 -135866267 - Tigger7 DNA MER2_type -2339 152 55 3 766 984 97 0 27 chr3 23733759 23733895 -135865888 + B1_Mm SINE Alu 3 138 -9 3 766 282 29 0 0 chr3 23733895 23733930 -135865853 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 3 766 984 97 0 27 chr3 23733930 23733942 -135865841 + B1_Mm SINE Alu 139 147 0 3 766 21 0 0 0 chr3 23733978 23733999 -135865784 + AT_rich Low_complexity Low_complexity 1 21 0 3 766 1812 178 65 70 chr3 23734092 23734479 -135865304 + ORR1B1 LTR MaLR 1 385 -9 3 766 4721 216 56 55 chr3 23734485 23735746 -135864037 + ORR1B1-int LTR MaLR 2 1264 -699 3 766 363 44 0 0 chr3 23735997 23736042 -135863741 + (TTTTG)n Simple_repeat Simple_repeat 1 45 0 3 766 1093 67 0 0 chr3 23736042 23736177 -135863606 - B1_Mus1 SINE Alu -13 135 1 3 766 450 0 0 0 chr3 23736191 23736241 -135863542 + (TC)n Simple_repeat Simple_repeat 2 51 0 3 766 388 382 98 26 chr3 23736254 23736407 -135863376 - RSINE1 SINE B4 0 165 2 3 766 372 77 0 0 chr3 23736676 23736728 -135863055 + (TG)n Simple_repeat Simple_repeat 1 52 0 3 766 455 328 58 108 chr3 23736912 23737189 -135862594 - MTD LTR MaLR -149 270 8 3 766 222 128 0 0 chr3 23738230 23738269 -135861514 + (A)n Simple_repeat Simple_repeat 1 39 0 3 766 392 319 14 0 chr3 23738293 23738500 -135861283 + L1MC LINE L1 4975 5184 -962 3 766 496 299 122 17 chr3 23738882 23739319 -135860464 + L1MC LINE L1 5184 5661 -636 3 766 8110 93 9 19 chr3 23739337 23740546 -135859237 + L1_Mur1 LINE L1 4653 5849 -37 3 766 8578 7 0 0 chr3 23740534 23741766 -135858017 - L1Md_A LINE L1 -428 6154 4923 3 766 3894 11 2 0 chr3 23741766 23742210 -135857573 + L1Md_A LINE L1 6138 6582 0 3 766 225 0 0 0 chr3 23742219 23742244 -135857539 + (A)n Simple_repeat Simple_repeat 1 25 0 3 766 6906 129 18 33 chr3 23742244 23743442 -135856341 + Lx3_Mus LINE L1 5827 7007 -2 3 766 181 367 83 17 chr3 23744300 23744480 -135855303 - L3 LINE CR1 -101 4388 4197 3 766 220 315 108 11 chr3 23746165 23746258 -135853525 + B1F2 SINE Alu 42 143 -6 3 766 293 0 0 26 chr3 23746259 23746297 -135853486 + (TAAA)n Simple_repeat Simple_repeat 4 40 0 3 766 225 361 98 29 chr3 23746621 23746795 -135852988 + MIR SINE MIR 27 212 -50 3 766 870 60 0 0 chr3 23747576 23747693 -135852090 + (TG)n Simple_repeat Simple_repeat 2 118 0 3 766 493 232 8 67 chr3 23747697 23747817 -135851966 - RSINE1 SINE B4 -41 124 12 3 766 22 0 0 0 chr3 23747923 23747945 -135851838 + AT_rich Low_complexity Low_complexity 1 22 0 3 766 216 0 0 0 chr3 23749373 23749397 -135850386 + (CAAAA)n Simple_repeat Simple_repeat 3 26 0 3 766 185 65 0 31 chr3 23749934 23749966 -135849817 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 3 766 1145 238 103 47 chr3 23752163 23752502 -135847281 + ORR1D2 LTR MaLR 11 368 -2 3 766 497 332 19 28 chr3 23752684 23752895 -135846888 - B3 SINE B2 -7 209 1 3 766 700 350 18 35 chr3 23754893 23755177 -135844606 + B4 SINE B4 8 286 -6 3 766 321 82 0 0 chr3 23755223 23755272 -135844511 + (CA)n Simple_repeat Simple_repeat 1 49 0 3 766 28 0 0 0 chr3 23755361 23755389 -135844394 + AT_rich Low_complexity Low_complexity 1 28 0 3 766 409 275 10 62 chr3 23756553 23756650 -135843133 - RSINE1 SINE B4 0 165 74 3 766 852 280 24 28 chr3 23756660 23756947 -135842836 - RLTR40 LTR ERVK -9 808 523 3 766 32936 92 11 3 chr3 23757052 23763064 -135836719 + L1Md_F2 LINE L1 391 6459 -123 3 766 294 106 0 0 chr3 23763074 23763121 -135836662 + (TATG)n Simple_repeat Simple_repeat 1 47 0 3 766 1790 240 44 30 chr3 23763128 23763631 -135836152 - RLTR40 LTR ERVK -307 510 1 3 766 22 70 0 0 chr3 23764399 23764442 -135835341 + AT_rich Low_complexity Low_complexity 1 43 0 3 766 616 362 76 18 chr3 23764620 23764963 -135834820 + MLT1A0 LTR MaLR 3 365 0 3 766 297 51 0 0 chr3 23765090 23765129 -135834654 + (TAAAA)n Simple_repeat Simple_repeat 2 40 0 4 766 507 33 0 0 chr3 23766110 23766171 -135833612 + (GGAA)n Simple_repeat Simple_repeat 1 61 0 4 766 1874 236 101 13 chr3 23766238 23766762 -135833021 + Lx5 LINE L1 6481 7050 0 4 766 3272 99 2 32 chr3 23766984 23767476 -135832307 - L1_Mus4 LINE L1 0 6636 6160 4 766 3088 91 7 0 chr3 23767477 23767897 -135831886 + L1_Mus4 LINE L1 5759 6181 -455 4 766 29 28 0 0 chr3 23768909 23768945 -135830838 + AT_rich Low_complexity Low_complexity 1 36 0 4 766 24 0 0 0 chr3 23769167 23769191 -135830592 + AT_rich Low_complexity Low_complexity 1 24 0 4 766 186 43 0 0 chr3 23770486 23770509 -135829274 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 4 766 2094 43 4 0 chr3 23770511 23770768 -135829015 - L1Md_F2 LINE L1 -19 6563 6306 4 766 292 390 65 0 chr3 23770926 23771080 -135828703 - MIRb SINE MIR -6 262 99 4 766 383 339 130 0 chr3 23772403 23772595 -135827188 - MIR SINE MIR -2 260 44 4 766 25 0 0 0 chr3 23772868 23772893 -135826890 + AT_rich Low_complexity Low_complexity 1 25 0 4 766 466 208 18 36 chr3 23773225 23773335 -135826448 - MTE2b LTR MaLR -72 307 200 4 766 14119 54 12 2 chr3 23773336 23775886 -135823897 - L1Md_F2 LINE L1 0 6582 4019 4 766 671 269 12 133 chr3 23775886 23776126 -135823657 - MTE2b LTR MaLR -168 211 1 4 766 312 336 132 74 chr3 23777002 23777259 -135822524 + B4A SINE B4 4 275 -17 4 766 450 0 0 0 chr3 23777316 23777366 -135822417 + (CA)n Simple_repeat Simple_repeat 1 50 0 4 766 4315 188 52 3 chr3 23778321 23779216 -135820567 - Lx5 LINE L1 -60 5817 4879 4 766 3173 207 128 10 chr3 23779208 23780250 -135819533 + Lx5 LINE L1 5831 7029 -29 4 766 641 13 13 0 chr3 23780268 23780346 -135819437 + (TA)n Simple_repeat Simple_repeat 1 79 0 4 766 207 0 0 0 chr3 23780369 23780392 -135819391 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 4 766 278 384 15 22 chr3 23780422 23780558 -135819225 + ID_B1 SINE B4 88 222 -2 4 766 442 325 91 24 chr3 23781208 23781416 -135818367 + ID_B1 SINE B4 3 224 0 4 766 500 0 17 0 chr3 23781634 23781694 -135818089 + (TCTA)n Simple_repeat Simple_repeat 3 63 0 4 766 223 423 12 47 chr3 23782264 23782435 -135817348 - MIR3 SINE MIR -4 204 40 4 766 26 0 0 0 chr3 23782520 23782546 -135817237 + AT_rich Low_complexity Low_complexity 1 26 0 4 766 216 250 0 0 chr3 23782600 23782656 -135817127 + (TG)n Simple_repeat Simple_repeat 1 56 0 4 766 579 268 43 32 chr3 23782663 23782848 -135816935 - B4 SINE B4 0 292 106 4 766 558 291 6 6 chr3 23782993 23783137 -135816646 + B3A SINE B2 3 147 -51 4 766 182 65 0 61 chr3 23783137 23783170 -135816613 + (CATA)n Simple_repeat Simple_repeat 4 34 0 4 766 558 291 6 6 chr3 23783170 23783205 -135816578 + B3A SINE B2 148 181 -17 4 766 231 167 0 0 chr3 23783411 23783453 -135816330 + (TATATG)n Simple_repeat Simple_repeat 5 46 0 4 766 37 69 0 0 chr3 23783453 23783525 -135816258 + AT_rich Low_complexity Low_complexity 1 72 0 4 766 224 245 41 0 chr3 23783560 23783609 -135816174 + B3A SINE B2 1 51 -147 4 766 222 129 32 16 chr3 23783641 23783704 -135816079 + (TA)n Simple_repeat Simple_repeat 2 65 0 4 766 21 57 0 0 chr3 23783809 23783844 -135815939 + AT_rich Low_complexity Low_complexity 1 35 0 4 766 390 331 33 8 chr3 23784001 23784123 -135815660 + RSINE1 SINE B4 3 127 -38 4 766 226 209 0 0 chr3 23784393 23784436 -135815347 + (TG)n Simple_repeat Simple_repeat 1 43 0 4 766 1336 233 65 3 chr3 23784451 23784744 -135815039 + ORR1B2 LTR MaLR 1 311 -56 4 766 233 375 12 0 chr3 23784968 23785048 -135814735 - ID4_ SINE ID 0 83 3 4 766 3698 135 145 17 chr3 23786251 23786636 -135813147 + RMER17D2 LTR ERVK 1 476 -333 4 766 1004 59 7 0 chr3 23786636 23786772 -135813011 + (TC)n Simple_repeat Simple_repeat 2 138 0 4 766 3698 135 145 17 chr3 23786772 23787103 -135812680 + RMER17D2 LTR ERVK 477 809 0 4 766 393 156 0 0 chr3 23787412 23787489 -135812294 + (TA)n Simple_repeat Simple_repeat 2 78 0 4 766 209 224 26 26 chr3 23787538 23787616 -135812167 + (TA)n Simple_repeat Simple_repeat 1 78 0 4 766 23 0 0 0 chr3 23788312 23788335 -135811448 + AT_rich Low_complexity Low_complexity 1 23 0 4 766 25 51 0 0 chr3 23788436 23788475 -135811308 + AT_rich Low_complexity Low_complexity 1 39 0 4 766 22 35 0 0 chr3 23788645 23788674 -135811109 + AT_rich Low_complexity Low_complexity 1 29 0 4 766 1638 186 53 0 chr3 23788745 23789084 -135810699 - RLTR15 LTR ERVK -2 357 1 4 766 1917 206 15 24 chr3 23790820 23791188 -135808595 + L1VL4 LINE L1 800 1166 -5816 4 766 3457 82 38 4 chr3 23791188 23791689 -135808094 + L1_Mus3 LINE L1 6114 6631 -7 4 766 3521 192 11 42 chr3 23791689 23792079 -135807704 + L1VL4 LINE L1 1167 1550 -2362 4 766 393 22 0 0 chr3 23792079 23792125 -135807658 + (TAAA)n Simple_repeat Simple_repeat 3 48 0 4 766 3521 190 11 45 chr3 23792125 23792649 -135807134 + L1VL4 LINE L1 1551 2045 -1867 4 766 239 151 37 19 chr3 23792651 23792705 -135807078 + L1_Mur1 LINE L1 3637 3691 -2195 4 766 229 200 0 0 chr3 23792699 23792735 -135807048 + Lx3C LINE L1 4380 4415 -1465 4 766 2613 105 36 10 chr3 23792735 23793119 -135806664 + MTA_Mm LTR MaLR 1 394 -2 4 766 12608 51 1 1 chr3 23793119 23794694 -135805089 + L1Md_F3 LINE L1 4011 5586 -297 4 766 7864 53 8 8 chr3 23794695 23795692 -135804091 + L1Md_F3 LINE L1 5588 6584 0 4 766 1621 179 31 34 chr3 23795698 23796051 -135803732 + Lx3C LINE L1 4387 4738 -1139 4 766 29628 100 23 6 chr3 23796052 23799831 -135799952 + L1Md_F2 LINE L1 355 4193 -1690 4 766 568 50 9 38 chr3 23799831 23799936 -135799847 + (TA)n Simple_repeat Simple_repeat 2 103 0 4 766 29628 94 11 8 chr3 23799936 23801317 -135798466 + L1Md_F2 LINE L1 4194 5584 -299 4 766 7152 89 2 7 chr3 23801318 23802319 -135797464 + L1Md_F2 LINE L1 5587 6582 0 4 766 6035 197 32 5 chr3 23802439 23803970 -135795813 + Lx3C LINE L1 4726 6308 -668 4 766 3298 41 5 0 chr3 23803970 23804364 -135795419 - MTA_Mm LTR MaLR 0 396 1 4 766 6035 218 32 17 chr3 23804364 23805029 -135794754 + Lx3C LINE L1 6309 6974 -2 4 766 3006 170 61 38 chr3 23805042 23805698 -135794085 + RLTR25A LTR ERVK 320 990 -113 4 766 721 204 6 6 chr3 23805835 23806008 -135793775 + (TATATG)n Simple_repeat Simple_repeat 3 175 0 4 766 368 260 43 58 chr3 23806077 23806216 -135793567 + MER67C LTR ERV1 148 284 -427 4 766 22 56 0 0 chr3 23806287 23806323 -135793460 + AT_rich Low_complexity Low_complexity 1 36 0 4 766 504 0 0 0 chr3 23806466 23806522 -135793261 + (GA)n Simple_repeat Simple_repeat 1 56 0 4 766 23 0 0 0 chr3 23807792 23807815 -135791968 + AT_rich Low_complexity Low_complexity 1 23 0 4 766 355 288 34 59 chr3 23808490 23808608 -135791175 + B3A SINE B2 80 194 -4 4 766 1174 86 40 0 chr3 23808851 23809025 -135790758 - B2_Mm2 SINE B2 -3 192 12 4 766 25 31 0 0 chr3 23809038 23809070 -135790713 + AT_rich Low_complexity Low_complexity 1 32 0 4 766 3158 131 54 0 chr3 23809814 23809901 -135789882 + Lx LINE L1 6089 6191 -463 4 766 666 91 0 0 chr3 23809901 23810000 -135789783 + (CA)n Simple_repeat Simple_repeat 2 100 0 4 766 3158 131 54 0 chr3 23810000 23810445 -135789338 + Lx LINE L1 6192 6649 -5 4 766 2477 96 137 35 chr3 23810603 23811034 -135788749 + IAPLTR2_Mm LTR ERVK 1 475 0 4 766 4798 59 5 37 chr3 23811044 23811693 -135788090 + IAPEz-int LTR ERVK 35 662 -5819 4 766 442 66 0 32 chr3 23811693 23811756 -135788027 + IAPEz-int LTR ERVK 1359 1419 -5062 4 766 1813 119 4 4 chr3 23811745 23812007 -135787776 + IAPEz-int LTR ERVK 2236 2497 -5183 4 766 919 81 24 0 chr3 23812004 23812127 -135787656 + IAPEz-int LTR ERVK 4785 4910 -2770 4 766 26419 12 3 0 chr3 23812127 23815076 -135784707 + IAPEz-int LTR ERVK 3525 6481 0 4 766 2448 96 140 33 chr3 23815076 23815505 -135784278 + IAPLTR2_Mm LTR ERVK 1 475 0 4 766 21 36 0 0 chr3 23815636 23815664 -135784119 + AT_rich Low_complexity Low_complexity 1 28 0 4 766 198 0 0 0 chr3 23816393 23816415 -135783368 + (CATG)n Simple_repeat Simple_repeat 1 22 0 4 766 295 316 50 33 chr3 23816543 23816664 -135783119 - B4A SINE B4 -169 123 1 4 766 6680 137 23 2 chr3 23819124 23820432 -135779351 + Lx LINE L1 5302 6642 -12 4 766 271 268 101 20 chr3 23820965 23821064 -135778719 + MIRb SINE MIR 103 209 -59 4 766 5028 91 12 0 chr3 23822030 23822047 -135777736 - L1_Mm LINE L1 -2823 3060 3040 4 766 3633 83 24 0 chr3 23822047 23822540 -135777243 - L1_Mus1 LINE L1 0 6567 6063 4 766 5028 91 12 0 chr3 23822540 23823244 -135776539 - L1_Mm LINE L1 -2844 3039 2331 4 766 205 171 0 0 chr3 23824211 23824246 -135775537 + A-rich Low_complexity Low_complexity 2 36 0 4 766 407 378 36 18 chr3 23825024 23825191 -135774592 - B4A SINE B4 -87 205 36 4 766 29 0 0 0 chr3 23825209 23825238 -135774545 + AT_rich Low_complexity Low_complexity 1 29 0 4 766 4649 92 137 36 chr3 23826129 23826933 -135772850 - RMER17D LTR ERVK -4 885 1 4 766 258 316 0 0 chr3 23829786 23829843 -135769940 - B3A SINE B2 -118 80 24 4 766 354 264 72 48 chr3 23831585 23831752 -135768031 + RLTR15 LTR ERVK 1 171 -188 4 766 344 283 62 80 chr3 23831721 23832009 -135767774 + RLTR15 LTR ERVK 72 354 -5 4 766 361 169 42 0 chr3 23832529 23832600 -135767183 - Lx9 LINE L1 -409 7235 7162 4 766 883 218 120 0 chr3 23832602 23832827 -135766956 + Lx9 LINE L1 7249 7500 -144 4 766 183 246 0 0 chr3 23832838 23832895 -135766888 + (CATA)n Simple_repeat Simple_repeat 2 58 0 4 766 257 197 67 53 chr3 23832948 23833023 -135766760 + Lx9 LINE L1 7562 7637 -7 4 766 26 30 0 0 chr3 23833173 23833206 -135766577 + AT_rich Low_complexity Low_complexity 1 33 0 4 766 219 105 53 0 chr3 23833207 23833264 -135766519 + (TA)n Simple_repeat Simple_repeat 1 60 0 4 766 358 280 216 16 chr3 23833334 23833519 -135766264 - ID_B1 SINE B4 -2 222 1 4 766 1350 330 31 39 chr3 23833533 23834078 -135765705 - Lx5 LINE L1 -3 7047 6507 4 766 3146 194 10 68 chr3 23834089 23834815 -135764968 + L1_Mur3 LINE L1 4978 5661 -219 4 766 22 35 0 0 chr3 23835950 23835979 -135763804 + AT_rich Low_complexity Low_complexity 1 29 0 4 766 245 51 0 25 chr3 23836051 23836091 -135763692 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 4 766 584 293 89 28 chr3 23836915 23837094 -135762689 + B4A SINE B4 96 285 -7 4 766 230 258 90 15 chr3 23837195 23837262 -135762521 + B4 SINE B4 1 72 -220 4 766 220 277 0 35 chr3 23837426 23837512 -135762271 + (CATATA)n Simple_repeat Simple_repeat 1 83 0 4 766 3231 99 10 22 chr3 23837661 23837783 -135762000 - Lx3_Mus LINE L1 -8 7001 6888 4 766 5027 112 30 41 chr3 23837783 23838680 -135761103 - RMER17D LTR ERVK -2 887 1 4 766 3231 99 10 22 chr3 23838680 23839054 -135760729 - Lx3_Mus LINE L1 -122 6887 6511 4 766 3528 118 44 2 chr3 23839054 23839599 -135760184 + Lx3_Mus LINE L1 5970 6537 -472 4 766 21 57 0 0 chr3 23840256 23840291 -135759492 + AT_rich Low_complexity Low_complexity 1 35 0 4 766 22 0 0 0 chr3 23840497 23840519 -135759264 + AT_rich Low_complexity Low_complexity 1 22 0 4 766 648 263 185 56 chr3 23841518 23841788 -135757995 + MTE2b LTR MaLR 12 316 -63 4 766 378 100 0 0 chr3 23842014 23842074 -135757709 + (TG)n Simple_repeat Simple_repeat 2 61 0 4 766 25 31 0 0 chr3 23843536 23843568 -135756215 + AT_rich Low_complexity Low_complexity 1 32 0 4 766 855 210 63 0 chr3 23843582 23843787 -135755996 - Lx9 LINE L1 -160 7484 7267 4 766 337 291 56 146 chr3 23844105 23844318 -135755465 - B3A SINE B2 0 198 5 5 766 396 0 0 0 chr3 23846050 23846094 -135753689 + (CA)n Simple_repeat Simple_repeat 2 45 0 5 766 19743 53 2 3 chr3 23846274 23848809 -135750974 + L1Md_F3 LINE L1 3055 5586 -297 5 766 8194 34 7 1 chr3 23848809 23849801 -135749982 + L1Md_F3 LINE L1 5587 6584 0 5 766 2294 134 43 20 chr3 23849822 23850094 -135749689 + Lx LINE L1 6247 6518 -136 5 766 183 80 0 0 chr3 23850094 23850119 -135749664 + (TGGG)n Simple_repeat Simple_repeat 1 25 0 5 766 2294 134 43 20 chr3 23850119 23850243 -135749540 + Lx LINE L1 6519 6650 -4 5 766 278 373 0 0 chr3 23850474 23850549 -135749234 + RSINE1 SINE B4 4 78 -87 5 766 677 227 6 0 chr3 23850565 23850737 -135749046 + GA-rich Low_complexity Low_complexity 3 175 0 5 766 21 71 0 0 chr3 23850809 23850851 -135748932 + AT_rich Low_complexity Low_complexity 1 42 0 5 766 214 162 0 0 chr3 23852315 23852352 -135747431 + (CATA)n Simple_repeat Simple_repeat 2 38 0 5 766 1030 98 0 0 chr3 23852895 23853038 -135746745 - B1_Mus1 SINE Alu -5 143 1 5 766 261 0 0 0 chr3 23853049 23853078 -135746705 + (T)n Simple_repeat Simple_repeat 1 29 0 5 766 21 0 0 0 chr3 23853789 23853810 -135745973 + AT_rich Low_complexity Low_complexity 1 21 0 5 766 21 71 0 0 chr3 23854199 23854241 -135745542 + AT_rich Low_complexity Low_complexity 1 42 0 5 766 277 319 0 0 chr3 23854510 23854604 -135745179 + (TATG)n Simple_repeat Simple_repeat 3 96 0 5 766 25 51 0 0 chr3 23854951 23854990 -135744793 + AT_rich Low_complexity Low_complexity 1 39 0 5 95 4692 173 60 33 chr3 23855036 23856345 -135743438 + L1VL1 LINE L1 3 1348 -2350 5 767 17021 144 11 34 chr3 23856338 23858789 -135740994 + L1_Mus3 LINE L1 2870 5234 -649 5 767 540 0 0 0 chr3 23858789 23858849 -135740934 + (TCTA)n Simple_repeat Simple_repeat 2 61 0 5 767 17021 124 12 13 chr3 23858849 23860225 -135739558 + L1_Mus3 LINE L1 5235 6634 -4 5 767 180 0 0 0 chr3 23861281 23861301 -135738482 + (TTG)n Simple_repeat Simple_repeat 2 21 0 5 767 2466 165 64 69 chr3 23862165 23862743 -135737040 - RMER15 LTR ERVL 0 575 1 5 767 1089 260 35 32 chr3 23862931 23863304 -135736479 - ORR1D1 LTR MaLR 0 374 1 5 767 486 0 0 0 chr3 23863356 23863410 -135736373 + (TA)n Simple_repeat Simple_repeat 1 54 0 5 767 252 0 0 0 chr3 23864006 23864034 -135735749 + (TAAA)n Simple_repeat Simple_repeat 3 30 0 5 767 3045 91 4 48 chr3 23865306 23865782 -135734001 - Lx3_Mus LINE L1 -253 5633 5179 5 767 8642 103 51 16 chr3 23865781 23865971 -135733812 + Lx3_Mus LINE L1 5610 5788 -1221 5 767 1312 108 5 0 chr3 23865971 23866157 -135733626 + B2_Mm1t SINE B2 1 187 -6 5 767 8642 103 51 16 chr3 23866157 23867319 -135732464 + Lx3_Mus LINE L1 5789 7009 0 5 767 4474 75 21 7 chr3 23868332 23868939 -135730844 + L1Md_F2 LINE L1 5952 6567 -15 5 767 429 103 0 0 chr3 23869153 23869221 -135730562 + (TG)n Simple_repeat Simple_repeat 2 69 0 5 767 2537 27 0 0 chr3 23869222 23869518 -135730265 + L1Md_A LINE L1 5291 5586 -297 5 767 8384 33 0 2 chr3 23869519 23870516 -135729267 + L1Md_A LINE L1 5588 6582 0 5 767 244 378 0 0 chr3 23870551 23870633 -135729150 - B1F SINE Alu -61 88 7 5 767 437 336 114 45 chr3 23870634 23870933 -135728850 - L1ME1 LINE L1 -66 6113 5811 5 767 3055 68 5 0 chr3 23870933 23871327 -135728456 - MTA_Mm LTR MaLR 0 396 1 5 767 437 307 189 21 chr3 23871327 23871547 -135728236 - L1ME1 LINE L1 -374 5810 5547 5 767 22 0 0 0 chr3 23871585 23871607 -135728176 + AT_rich Low_complexity Low_complexity 1 22 0 5 767 339 323 40 35 chr3 23871843 23872016 -135727767 + MLT1B LTR MaLR 209 382 -8 5 767 180 0 0 0 chr3 23872187 23872207 -135727576 + (A)n Simple_repeat Simple_repeat 1 20 0 5 767 925 132 0 15 chr3 23872856 23873120 -135726663 + (TG)n Simple_repeat Simple_repeat 1 259 0 5 767 263 247 82 0 chr3 23874577 23874650 -135725133 + MTEb LTR MaLR 1 79 -300 5 767 645 273 25 15 chr3 23874812 23875013 -135724770 + MTEb LTR MaLR 177 379 0 5 767 1051 171 5 0 chr3 23875453 23875646 -135724137 + L1_Mur2 LINE L1 5105 5298 -579 5 767 2982 33 3 3 chr3 23875646 23876008 -135723775 - L1Md_F2 LINE L1 -568 6014 5653 5 767 4143 76 6 4 chr3 23876008 23876550 -135723233 + L1Md_F2 LINE L1 6021 6563 -19 5 767 6294 121 87 3 chr3 23876561 23877824 -135721959 + Lx LINE L1 5296 6644 -10 5 767 23 0 0 0 chr3 23877984 23878007 -135721776 + AT_rich Low_complexity Low_complexity 1 23 0 5 767 379 0 19 19 chr3 23878399 23878451 -135721332 + (TAGA)n Simple_repeat Simple_repeat 1 52 0 5 767 216 163 0 0 chr3 23878688 23878731 -135721052 + (CA)n Simple_repeat Simple_repeat 2 44 0 5 767 264 120 0 0 chr3 23879168 23879218 -135720565 + (TC)n Simple_repeat Simple_repeat 2 51 0 5 767 2491 217 58 16 chr3 23879554 23879850 -135719933 + L1_Mur1 LINE L1 686 1015 -5969 5 767 4266 138 41 35 chr3 23879850 23880314 -135719469 + RMER17D2 LTR ERVK 1 469 -340 5 767 243 0 0 0 chr3 23880314 23880341 -135719442 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 5 767 1124 70 14 0 chr3 23880341 23880484 -135719299 - B1_Mm SINE Alu -2 145 1 5 767 4266 138 41 35 chr3 23880484 23880822 -135718961 + RMER17D2 LTR ERVK 470 808 -1 5 767 12966 209 63 35 chr3 23880822 23881837 -135717946 + L1_Mur1 LINE L1 1016 2023 -3863 5 767 3335 175 40 2 chr3 23881837 23882460 -135717323 + Lx2B LINE L1 6354 7000 0 5 767 12966 207 64 39 chr3 23882460 23885549 -135714234 + L1_Mur1 LINE L1 2024 5211 -675 5 767 236 310 67 22 chr3 23885549 23885638 -135714145 + ORR1E LTR MaLR 267 359 0 5 767 28 29 0 0 chr3 23885816 23885851 -135713932 + AT_rich Low_complexity Low_complexity 1 35 0 5 767 433 292 84 5 chr3 23885972 23886175 -135713608 + L1MA5 LINE L1 5696 5914 -386 5 767 189 107 0 0 chr3 23886188 23886216 -135713567 + (TATG)n Simple_repeat Simple_repeat 4 31 0 5 767 483 173 194 30 chr3 23886216 23886412 -135713371 + RLTR11A2 LTR ERVK 4 237 -291 5 767 3683 88 6 4 chr3 23886816 23887341 -135712442 - L1_Mm LINE L1 -433 5450 4925 5 767 5932 102 11 0 chr3 23887329 23888161 -135711622 + L1_Mus1 LINE L1 5725 6565 -2 5 767 387 0 0 0 chr3 23888734 23888777 -135711006 + (T)n Simple_repeat Simple_repeat 1 43 0 5 767 347 309 121 79 chr3 23890088 23890244 -135709539 - B3A SINE B2 0 198 42 5 767 204 40 0 0 chr3 23890244 23890269 -135709514 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 5 767 347 309 121 79 chr3 23890269 23890302 -135709481 - B3A SINE B2 -157 41 1 5 767 23 78 0 0 chr3 23890438 23890489 -135709294 + AT_rich Low_complexity Low_complexity 1 51 0 5 767 311 86 0 49 chr3 23890978 23891039 -135708744 + (TA)n Simple_repeat Simple_repeat 2 59 0 5 767 249 57 0 0 chr3 23891232 23891267 -135708516 + (GAAA)n Simple_repeat Simple_repeat 2 36 0 5 767 1127 307 69 25 chr3 23892143 23892550 -135707233 + Lx9 LINE L1 6358 6782 -862 5 767 654 306 218 37 chr3 23892571 23892917 -135706866 + Lx9 LINE L1 6872 7299 -345 5 767 477 0 0 0 chr3 23892917 23892970 -135706813 + (CA)n Simple_repeat Simple_repeat 2 54 0 5 767 654 306 218 37 chr3 23892970 23893133 -135706650 + Lx9 LINE L1 7300 7473 -171 5 767 270 179 0 0 chr3 23893142 23893198 -135706585 + (CA)n Simple_repeat Simple_repeat 2 57 0 5 767 24 53 0 0 chr3 23894591 23894629 -135705154 + AT_rich Low_complexity Low_complexity 1 38 0 5 767 23 0 0 0 chr3 23894836 23894859 -135704924 + AT_rich Low_complexity Low_complexity 1 23 0 5 767 29 47 0 0 chr3 23895370 23895413 -135704370 + AT_rich Low_complexity Low_complexity 1 43 0 5 767 387 0 0 0 chr3 23895662 23895705 -135704078 + (TA)n Simple_repeat Simple_repeat 1 43 0 5 767 5397 124 32 33 chr3 23896252 23897997 -135701786 + L1Md_F2 LINE L1 244 1979 -3904 5 767 192 40 0 0 chr3 23897997 23898022 -135701761 + (CAAA)n Simple_repeat Simple_repeat 3 27 0 5 767 5397 86 8 25 chr3 23898022 23898066 -135701717 + L1Md_F2 LINE L1 1980 2021 -3862 5 767 8985 97 32 0 chr3 23898069 23899383 -135700400 + L1Md_F2 LINE L1 4230 5585 -298 5 767 7144 75 9 23 chr3 23899384 23900394 -135699389 + L1Md_F2 LINE L1 5587 6582 0 5 767 237 291 18 0 chr3 23900466 23900576 -135699207 + (TA)n Simple_repeat Simple_repeat 1 112 0 5 767 410 272 0 46 chr3 23901278 23901386 -135698397 + RSINE1 SINE B4 13 115 -50 5 767 26 0 0 0 chr3 23902054 23902080 -135697703 + AT_rich Low_complexity Low_complexity 1 26 0 5 767 1982 229 26 2 chr3 23902444 23902870 -135696913 - RMER1B Other Other -191 875 249 5 767 508 168 134 64 chr3 23902874 23903046 -135696737 + MTC-int LTR MaLR 1069 1252 -6 5 767 1884 187 77 13 chr3 23903056 23903435 -135696348 + MTC LTR MaLR 11 413 -8 5 767 215 177 31 31 chr3 23903471 23903535 -135696248 + (TAGA)n Simple_repeat Simple_repeat 3 66 0 5 767 234 0 0 0 chr3 23904454 23904480 -135695303 + (CA)n Simple_repeat Simple_repeat 2 27 0 5 767 1089 85 0 0 chr3 23904840 23905016 -135694767 + (TC)n Simple_repeat Simple_repeat 1 176 0 5 767 421 331 21 0 chr3 23905029 23905171 -135694612 - B1_Mur3 SINE Alu -4 145 1 5 767 21 36 0 0 chr3 23905539 23905567 -135694216 + AT_rich Low_complexity Low_complexity 1 28 0 5 767 207 69 0 0 chr3 23906522 23906551 -135693232 + (CTTA)n Simple_repeat Simple_repeat 4 32 0 5 767 1967 133 9 3 chr3 23906639 23906956 -135692827 - L1_Mus3 LINE L1 -3 6635 6317 5 767 31 26 0 0 chr3 23908462 23908500 -135691283 + AT_rich Low_complexity Low_complexity 1 38 0 5 767 354 195 0 0 chr3 23908500 23908577 -135691206 + (TG)n Simple_repeat Simple_repeat 2 78 0 5 767 223 339 21 71 chr3 23909320 23909460 -135690323 - ID_B1 SINE B4 -8 216 84 5 767 239 346 55 18 chr3 23909519 23909628 -135690155 - PB1D7 SINE Alu -5 115 3 5 767 21 36 0 0 chr3 23909892 23909920 -135689863 + AT_rich Low_complexity Low_complexity 1 28 0 5 767 183 140 43 85 chr3 23910130 23910177 -135689606 + L3 LINE CR1 2533 2577 -1912 5 767 658 40 50 0 chr3 23910423 23910522 -135689261 + L1Md_T LINE L1 6478 6581 -1 5 767 402 330 9 0 chr3 23910545 23910651 -135689132 + RSINE1 SINE B4 5 111 -54 5 767 231 114 0 0 chr3 23910671 23910706 -135689077 + (CA)n Simple_repeat Simple_repeat 2 36 0 5 767 741 23 0 0 chr3 23910706 23910792 -135688991 + (GA)n Simple_repeat Simple_repeat 2 88 0 5 767 454 118 0 0 chr3 23911201 23911277 -135688506 + L1_Mus2 LINE L1 6490 6565 -1 5 767 204 67 0 0 chr3 23911282 23911312 -135688471 + (TAAAA)n Simple_repeat Simple_repeat 2 31 0 5 767 467 183 65 0 chr3 23911320 23911413 -135688370 + Lx7 LINE L1 7127 7225 -471 5 767 766 258 12 0 chr3 23911575 23911742 -135688041 + B3 SINE B2 38 206 -10 5 767 229 239 75 0 chr3 23911799 23911866 -135687917 - L1M5 LINE L1 -503 5621 5550 5 767 443 211 171 67 chr3 23911932 23912201 -135687582 + Lx7 LINE L1 7206 7502 -194 5 767 450 0 0 0 chr3 23912211 23912261 -135687522 + (GA)n Simple_repeat Simple_repeat 2 51 0 5 767 248 192 71 82 chr3 23912265 23912350 -135687433 + Lx7 LINE L1 7612 7695 -1 5 767 6475 127 89 32 chr3 23914863 23916068 -135683715 + Lx3A LINE L1 5706 6978 -3 5 767 24 32 0 0 chr3 23916069 23916100 -135683683 + AT_rich Low_complexity Low_complexity 1 31 0 5 767 430 391 7 0 chr3 23916523 23916674 -135683109 + 7SK RNA RNA 61 212 -119 6 767 38345 60 12 4 chr3 23917055 23923606 -135676177 - L1Md_T LINE L1 -1 6581 98 6 767 415 151 67 0 chr3 23923631 23923750 -135676033 + Lx9 LINE L1 7514 7640 -4 6 767 352 41 0 0 chr3 23924161 23924210 -135675573 + L1_Mus3 LINE L1 6578 6626 -12 6 767 36 40 0 0 chr3 23924785 23924835 -135674948 + AT_rich Low_complexity Low_complexity 1 50 0 6 767 552 30 0 0 chr3 23924836 23924902 -135674881 + (TAGA)n Simple_repeat Simple_repeat 1 66 0 6 767 777 98 0 0 chr3 23925396 23925508 -135674275 + (TA)n Simple_repeat Simple_repeat 2 113 0 6 767 895 240 25 0 chr3 23926522 23926726 -135673057 - Lx9 LINE L1 -347 7297 7089 6 767 227 267 8 48 chr3 23927464 23927590 -135672193 + A-rich Low_complexity Low_complexity 2 122 0 6 767 39 0 0 0 chr3 23929535 23929574 -135670209 + AT_rich Low_complexity Low_complexity 1 39 0 6 767 577 297 18 1 chr3 23930014 23930182 -135669601 + Lx6 LINE L1 7179 7338 -122 6 767 2916 178 32 34 chr3 23930186 23930807 -135668976 + RLTR26 LTR ERVK 23 642 0 6 767 249 220 0 33 chr3 23931233 23931294 -135668489 + CT-rich Low_complexity Low_complexity 3 61 0 6 767 243 0 0 0 chr3 23931430 23931457 -135668326 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 6 767 937 252 64 17 chr3 23931692 23931926 -135667857 - RLTR20B3 LTR ERVK -10 567 323 6 767 232 188 0 0 chr3 23931926 23931974 -135667809 - RLTR20B3 LTR ERVK -527 50 3 6 767 477 0 0 0 chr3 23933442 23933495 -135666288 + (TC)n Simple_repeat Simple_repeat 2 54 0 6 767 1005 113 0 0 chr3 23933495 23933636 -135666147 - B1_Mus1 SINE Alu -7 141 1 6 767 23 33 0 0 chr3 23934050 23934080 -135665703 + AT_rich Low_complexity Low_complexity 1 30 0 6 767 25 83 0 0 chr3 23934210 23934270 -135665513 + AT_rich Low_complexity Low_complexity 1 60 0 6 767 3214 110 10 1 chr3 23934617 23935231 -135664552 + L1_Mus4 LINE L1 5409 6036 -600 6 767 1150 154 17 50 chr3 23935236 23935475 -135664308 + L1_Mus4 LINE L1 6417 6647 -7 6 767 306 0 0 0 chr3 23936615 23936649 -135663134 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 6 767 264 235 14 14 chr3 23937122 23937191 -135662592 + B3 SINE B2 36 104 -112 6 767 25 0 0 0 chr3 23937333 23937358 -135662425 + AT_rich Low_complexity Low_complexity 1 25 0 6 767 252 143 0 0 chr3 23938734 23938776 -135661007 + (GGAA)n Simple_repeat Simple_repeat 3 44 0 6 767 207 108 0 26 chr3 23939069 23939107 -135660676 + (TTTTTG)n Simple_repeat Simple_repeat 4 40 0 6 767 1157 176 65 38 chr3 23939108 23939398 -135660385 - Lx4B LINE L1 0 7058 6761 6 767 30 77 0 0 chr3 23940161 23940226 -135659557 + AT_rich Low_complexity Low_complexity 1 65 0 6 767 467 232 319 0 chr3 23940404 23940631 -135659152 - Lx9 LINE L1 -8 7636 7338 6 767 3771 9 43 0 chr3 23940631 23941389 -135658394 + MERVL-int LTR ERVL 295 1085 -4400 6 767 2347 7 4 0 chr3 23941389 23941664 -135658119 - MT2_Mm LTR ERVL -214 279 4 6 767 639 339 16 10 chr3 23941941 23942135 -135657648 - B4A SINE B4 -96 196 2 6 767 448 307 83 16 chr3 23942282 23942474 -135657309 + B3 SINE B2 5 209 -7 6 767 420 99 0 0 chr3 23942546 23942617 -135657166 + (CA)n Simple_repeat Simple_repeat 2 72 0 6 767 691 259 120 48 chr3 23943061 23943415 -135656368 + MTD LTR MaLR 6 406 -13 6 767 350 359 54 5 chr3 23943413 23943634 -135656149 - MER2 DNA MER2_type -11 334 103 6 767 21 36 0 0 chr3 23943639 23943667 -135656116 + AT_rich Low_complexity Low_complexity 1 28 0 6 767 251 54 0 26 chr3 23943889 23943927 -135655856 + (TTTC)n Simple_repeat Simple_repeat 4 40 0 6 767 395 197 25 0 chr3 23944369 23944466 -135655317 + B1_Mur3 SINE Alu 47 149 0 6 767 346 271 29 7 chr3 23945098 23945219 -135654564 - L1MA4 LINE L1 -241 5939 5817 6 767 252 268 0 15 chr3 23945804 23945893 -135653890 - L1MA4 LINE L1 -1807 4336 4234 6 767 491 291 56 14 chr3 23946234 23946377 -135653406 + B1_Mur4 SINE Alu 1 149 -1 6 767 339 25 0 0 chr3 23946384 23946424 -135653359 + (GA)n Simple_repeat Simple_repeat 2 41 0 6 767 243 0 0 0 chr3 23946422 23946449 -135653334 + (GGA)n Simple_repeat Simple_repeat 3 29 0 6 767 235 211 19 0 chr3 23947081 23947133 -135652650 - MTE2b LTR MaLR 0 379 327 6 767 634 284 52 90 chr3 23947145 23947489 -135652294 + RLTR18 LTR ERVK 1 331 -285 6 767 628 320 39 22 chr3 23947506 23947813 -135651970 + RLTR18B LTR ERVK 177 591 -25 6 767 415 295 179 51 chr3 23947830 23948116 -135651667 - MTE2b LTR MaLR -39 340 17 6 767 3019 67 13 5 chr3 23948116 23948509 -135651274 + MTA_Mm LTR MaLR 1 396 0 6 767 260 299 88 61 chr3 23948509 23948521 -135651262 - MTE2b LTR MaLR -363 16 5 6 767 37 23 0 0 chr3 23948864 23948908 -135650875 + AT_rich Low_complexity Low_complexity 1 44 0 6 767 279 321 86 19 chr3 23949829 23949991 -135649792 + Charlie1 DNA MER1_type 2401 2573 -208 6 767 638 320 41 41 chr3 23950178 23950448 -135649335 - B4 SINE B4 -18 274 5 6 767 22 80 0 0 chr3 23950500 23950550 -135649233 + AT_rich Low_complexity Low_complexity 1 50 0 6 767 647 199 102 8 chr3 23950786 23950913 -135648870 - B1_Mur4 SINE Alu -11 139 1 6 767 2817 141 22 11 chr3 23951213 23951664 -135648119 - Lx2B LINE L1 -362 6638 6183 6 767 904 200 17 4 chr3 23951655 23951910 -135647873 + Lx2B LINE L1 6641 6996 -4 6 767 539 314 32 0 chr3 23953076 23953232 -135646551 + MER44B DNA MER2_type 14 174 -376 6 767 498 304 91 49 chr3 23953259 23953546 -135646237 + MER44B DNA MER2_type 248 546 -4 6 767 191 344 61 30 chr3 23954034 23954166 -135645617 + MIRb SINE MIR 16 151 -117 6 767 248 257 18 90 chr3 23954254 23954365 -135645418 - ORR1E LTR MaLR -15 364 262 6 767 277 339 87 46 chr3 23954415 23954588 -135645195 - ORR1E LTR MaLR -179 180 1 6 767 310 434 28 0 chr3 23955876 23956019 -135643764 + RSINE1 SINE B4 4 150 -15 6 767 551 27 14 0 chr3 23957465 23957538 -135642245 + (CA)n Simple_repeat Simple_repeat 2 75 0 6 767 577 120 8 53 chr3 23958374 23958506 -135641277 + L1_Mus3 LINE L1 6512 6637 -1 6 767 239 274 16 31 chr3 23959603 23959731 -135640052 + T-rich Low_complexity Low_complexity 3 128 0 6 767 714 289 59 37 chr3 23960677 23960950 -135638833 + RMER1C Other Other 18 296 -1046 6 767 1691 267 107 19 chr3 23961176 23961748 -135638035 + RMER1C Other Other 708 1329 -13 6 767 3049 122 0 70 chr3 23961746 23962277 -135637506 + L1_Mm LINE L1 4669 5162 -721 6 767 207 214 48 10 chr3 23962650 23962697 -135637086 + (CAAA)n Simple_repeat Simple_repeat 1 47 0 6 767 750 114 119 15 chr3 23962697 23962831 -135636952 + B1_Mus1 SINE Alu 1 148 0 6 767 207 214 48 10 chr3 23962831 23962887 -135636896 + (CAAA)n Simple_repeat Simple_repeat 4 63 0 6 767 533 295 48 16 chr3 23962933 23963119 -135636664 + ID_B1 SINE B4 26 217 -7 6 767 479 333 59 8 chr3 23963195 23963585 -135636198 + L1M2 LINE L1 2157 2566 -4283 6 767 517 349 20 0 chr3 23964070 23964216 -135635567 + RSINE1 SINE B4 8 156 -9 6 767 248 269 0 13 chr3 23964363 23964442 -135635341 + L1M2 LINE L1 4053 4130 -2715 6 767 297 176 158 26 chr3 23964443 23964519 -135635264 + RLTR25B LTR ERVK 424 509 -519 6 767 723 79 0 0 chr3 23964460 23964561 -135635222 + B1_Mm SINE Alu 46 146 -1 6 767 288 262 10 37 chr3 23964663 23964801 -135634982 + L1_Mur1 LINE L1 3516 3651 -2226 6 767 397 250 31 22 chr3 23964818 23965003 -135634780 + L1M2 LINE L1 4435 4650 -2195 6 767 23 0 0 0 chr3 23965081 23965104 -135634679 + AT_rich Low_complexity Low_complexity 1 23 0 6 767 724 153 17 12 chr3 23966525 23966697 -135633086 + GA-rich Low_complexity Low_complexity 2 174 0 6 767 186 43 0 0 chr3 23967344 23967367 -135632416 + (TG)n Simple_repeat Simple_repeat 1 23 0 6 767 1899 189 38 3 chr3 23967550 23967916 -135631867 + RLTR30 LTR ERV1 1 379 0 6 767 405 329 34 34 chr3 23967938 23968086 -135631697 + B1F SINE Alu 1 148 -1 6 767 725 57 0 0 chr3 23968089 23968195 -135631588 + L1Md_F2 LINE L1 6465 6570 -12 6 767 252 294 47 12 chr3 23968639 23968725 -135631058 + MLT2B4 LTR ERVL 163 251 -305 6 767 277 316 43 68 chr3 23968860 23969023 -135630760 - MLT1A0 LTR MaLR -165 200 42 6 767 25 51 0 0 chr3 23969166 23969205 -135630578 + AT_rich Low_complexity Low_complexity 1 39 0 6 767 180 97 0 0 chr3 23969699 23969730 -135630053 + (TAAAA)n Simple_repeat Simple_repeat 4 34 0 6 767 240 35 0 0 chr3 23970508 23970537 -135629246 + (A)n Simple_repeat Simple_repeat 1 29 0 6 767 305 101 0 71 chr3 23970633 23970718 -135629065 + T-rich Low_complexity Low_complexity 2 80 0 6 767 341 58 0 19 chr3 23971638 23971691 -135628092 + (TA)n Simple_repeat Simple_repeat 2 53 0 6 767 23 97 0 0 chr3 23971723 23971795 -135627988 + AT_rich Low_complexity Low_complexity 1 72 0 6 767 24 32 0 0 chr3 23971895 23971926 -135627857 + AT_rich Low_complexity Low_complexity 1 31 0 6 767 29 28 0 0 chr3 23972016 23972052 -135627731 + AT_rich Low_complexity Low_complexity 1 36 0 6 767 10023 115 15 5 chr3 23972368 23973971 -135625812 - MusHAL1 LINE L1 -634 2078 460 6 767 6034 146 50 3 chr3 23973969 23975659 -135624124 - L1_Mus4 LINE L1 -7 6629 4862 6 767 1683 202 3 6 chr3 23975674 23976012 -135623771 + L1Md_F LINE L1 258 594 -5925 6 767 575 187 149 55 chr3 23976012 23976193 -135623590 + RLTR26 LTR ERVK 266 463 -179 6 767 324 0 0 0 chr3 23976384 23976420 -135623363 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 6 767 313 360 53 20 chr3 23976428 23976578 -135623205 + Lx8 LINE L1 6961 7115 -358 6 767 23 33 0 0 chr3 23976902 23976932 -135622851 + AT_rich Low_complexity Low_complexity 1 30 0 6 767 1747 203 98 8 chr3 23977519 23977896 -135621887 - MTC LTR MaLR -10 411 1 6 767 440 239 228 1 chr3 23978139 23978312 -135621471 - MTD LTR MaLR -14 405 208 6 767 2596 120 43 15 chr3 23978722 23979120 -135620663 + RLTR9E LTR ERVK 1 409 0 6 767 4105 93 45 0 chr3 23980898 23981234 -135618549 + L1_Mm LINE L1 2296 2632 -3251 6 767 249 83 0 0 chr3 23981234 23981270 -135618513 + (TA)n Simple_repeat Simple_repeat 1 36 0 6 767 4105 93 45 0 chr3 23981270 23981535 -135618248 + L1_Mm LINE L1 2633 2922 -2961 6 95 31919 89 4 8 chr3 23981537 23986616 -135613167 + L1Md_F2 LINE L1 533 5586 -297 6 768 7736 61 1 3 chr3 23986617 23987613 -135612170 + L1Md_F2 LINE L1 5588 6581 -1 6 768 302 193 30 0 chr3 23987633 23987703 -135612080 - MTEa LTR MaLR -13 366 290 6 768 36773 30 1 7 chr3 23987703 23992878 -135606905 + L1Md_T LINE L1 448 5586 -297 7 768 8450 32 0 0 chr3 23992878 23993874 -135605909 + L1Md_T LINE L1 5587 6582 0 7 768 709 293 108 30 chr3 23993877 23994173 -135605610 - MTEa LTR MaLR -59 320 2 6 768 237 163 0 0 chr3 23994293 23994342 -135605441 + (CA)n Simple_repeat Simple_repeat 2 50 0 7 768 254 125 21 0 chr3 23995149 23995197 -135604586 + (GGA)n Simple_repeat Simple_repeat 3 51 0 7 768 522 305 116 22 chr3 23995285 23995466 -135604317 + B3A SINE B2 1 198 0 7 768 205 267 127 51 chr3 23995858 23995937 -135603846 + MIRb SINE MIR 41 125 -143 7 768 567 29 0 0 chr3 23996046 23996115 -135603668 + (CA)n Simple_repeat Simple_repeat 2 70 0 7 768 625 308 40 11 chr3 23996951 23997125 -135602658 + B3A SINE B2 1 179 -19 7 768 21 0 0 0 chr3 23997862 23997883 -135601900 + AT_rich Low_complexity Low_complexity 1 21 0 7 768 260 340 89 13 chr3 23998349 23998507 -135601276 + MIRc SINE MIR 81 250 -18 7 768 820 232 108 0 chr3 23998567 23998761 -135601022 + B3 SINE B2 2 216 0 7 768 233 241 0 17 chr3 23999618 23999677 -135600106 + MER92C LTR ERV1 486 543 -11 7 768 232 330 11 22 chr3 24001342 24001432 -135598351 + B3 SINE B2 125 213 -3 1 768 22 0 0 0 chr3 24001835 24001857 -135597926 + AT_rich Low_complexity Low_complexity 1 22 0 2 768 28 0 0 0 chr3 24002223 24002251 -135597532 + AT_rich Low_complexity Low_complexity 1 28 0 3 768 311 356 131 19 chr3 24002547 24002753 -135597030 + MIRb SINE MIR 25 253 -15 4 768 813 266 0 5 chr3 24003196 24003389 -135596394 + Lx9 LINE L1 7210 7401 -243 5 768 312 83 0 0 chr3 24003435 24003483 -135596300 + (CA)n Simple_repeat Simple_repeat 1 48 0 6 768 27 0 0 0 chr3 24003488 24003515 -135596268 + AT_rich Low_complexity Low_complexity 1 27 0 7 768 258 32 0 0 chr3 24004048 24004079 -135595704 + (CA)n Simple_repeat Simple_repeat 1 31 0 8 768 1068 237 55 0 chr3 24004081 24004338 -135595445 - Lx9 LINE L1 -168 7476 7206 9 768 421 239 79 10 chr3 24004338 24004466 -135595317 + Lx9 LINE L1 6639 6893 -751 1 768 498 75 64 0 chr3 24004879 24004973 -135594810 + (CAGAGA)n Simple_repeat Simple_repeat 6 105 0 1 768 438 306 73 15 chr3 24005115 24005251 -135594532 + RSINE1 SINE B4 1 144 -21 1 768 852 288 83 54 chr3 24005706 24006245 -135593538 + RLTR20D LTR ERVK 1 578 0 1 768 357 290 58 64 chr3 24006328 24006516 -135593267 + Lx9 LINE L1 7285 7471 -2 1 768 22 35 0 0 chr3 24007048 24007077 -135592706 + AT_rich Low_complexity Low_complexity 1 29 0 1 768 222 37 0 0 chr3 24007394 24007421 -135592362 + (TTTAA)n Simple_repeat Simple_repeat 4 30 0 1 768 7218 68 19 4 chr3 24007422 24008962 -135590821 - L1Md_F2 LINE L1 -16 6566 5005 1 768 2858 108 0 0 chr3 24008950 24009357 -135590426 + L1Md_F2 LINE L1 4587 4993 -890 1 768 375 200 27 0 chr3 24011377 24011452 -135588331 + MTE2a LTR MaLR 294 370 -9 1 768 42 77 0 0 chr3 24012895 24012986 -135586797 + AT_rich Low_complexity Low_complexity 1 91 0 1 768 275 237 103 37 chr3 24013170 24013306 -135586477 + MER3 DNA MER1_type 65 209 0 1 768 598 301 102 116 chr3 24013309 24013644 -135586139 + MTE2a LTR MaLR 1 330 -49 2 768 250 253 161 0 chr3 24013875 24013962 -135585821 + RMER10A LTR ERVL 322 422 -20 2 768 227 143 17 51 chr3 24014759 24014818 -135584965 + T-rich Low_complexity Low_complexity 2 58 0 2 768 580 275 21 14 chr3 24014837 24014981 -135584802 + B1_Mur1 SINE Alu 5 149 0 2 768 763 350 25 70 chr3 24015497 24015896 -135583887 - MLT1B LTR MaLR -2 388 8 2 768 503 340 192 6 chr3 24016009 24016163 -135583620 - MTEb LTR MaLR -3 376 224 2 768 185 0 0 39 chr3 24016163 24016189 -135583594 + (GA)n Simple_repeat Simple_repeat 2 26 0 2 768 503 340 192 6 chr3 24016189 24016351 -135583432 - MTEb LTR MaLR -156 223 3 2 768 225 330 222 0 chr3 24016461 24016637 -135583146 - MIR SINE MIR -1 261 47 2 768 1120 270 37 56 chr3 24016970 24017346 -135582437 - RMER13B LTR ERVK -9 899 531 2 768 549 85 37 0 chr3 24017346 24017428 -135582355 - L1_Mus3 LINE L1 -785 5853 5769 2 768 4122 110 42 32 chr3 24017466 24018150 -135581633 + L1_Mus3 LINE L1 5948 6638 0 3 768 816 98 98 0 chr3 24018499 24018622 -135581161 - L1_Mus3 LINE L1 -376 6262 6128 3 768 22 35 0 0 chr3 24020181 24020210 -135579573 + AT_rich Low_complexity Low_complexity 1 29 0 3 768 241 98 0 68 chr3 24020570 24020614 -135579169 - MLT1H2 LTR MaLR -64 425 385 3 768 736 295 50 9 chr3 24020776 24020995 -135578788 + MTE2b LTR MaLR 3 230 -149 3 768 402 176 0 0 chr3 24021083 24021168 -135578615 + (CA)n Simple_repeat Simple_repeat 2 86 0 3 768 660 361 47 33 chr3 24021172 24021536 -135578247 - MLT2B4 LTR ERVL -66 490 122 3 768 334 305 12 20 chr3 24021678 24021815 -135577968 - B4A SINE B4 -29 263 127 3 768 413 248 103 0 chr3 24022122 24022239 -135577544 - B1_Mur2 SINE Alu 0 149 21 3 768 391 325 227 27 chr3 24022574 24022879 -135576904 + MLT1K LTR MaLR 229 594 -1 3 768 312 370 41 26 chr3 24023204 24023398 -135576385 + MIR SINE MIR 13 209 -53 4 768 1045 165 11 5 chr3 24023427 24023616 -135576167 + Lx2 LINE L1 6808 6997 0 4 768 31 0 0 0 chr3 24023671 24023702 -135576081 + AT_rich Low_complexity Low_complexity 1 31 0 4 768 501 306 7 30 chr3 24025589 24025775 -135574008 - MLT1B LTR MaLR -199 175 1 4 768 1184 218 60 121 chr3 24026217 24026544 -135573239 + ORR1A4 LTR MaLR 47 355 -39 4 768 265 0 24 48 chr3 24026544 24026586 -135573197 + (TTTG)n Simple_repeat Simple_repeat 2 42 0 4 768 1070 59 15 0 chr3 24026586 24026721 -135573062 - B1_Mm SINE Alu -9 138 2 4 768 1184 218 60 121 chr3 24026721 24026757 -135573026 + ORR1A4 LTR MaLR 356 388 -6 4 768 3143 184 41 30 chr3 24026762 24027399 -135572384 + ORR1A4-int LTR MaLR 1 644 -1319 4 768 4573 193 43 38 chr3 24027766 24029193 -135570590 + ORR1A4-int LTR MaLR 647 1792 0 4 768 1725 201 3 9 chr3 24029193 24029524 -135570259 + ORR1A4 LTR MaLR 1 329 0 4 768 23 0 0 0 chr3 24030552 24030575 -135569208 + AT_rich Low_complexity Low_complexity 1 23 0 4 768 323 309 16 16 chr3 24031436 24031564 -135568219 + ID_B1 SINE B4 88 215 -9 4 768 240 255 82 31 chr3 24031479 24031576 -135568207 + B1F SINE Alu 48 149 0 4 768 21 0 0 0 chr3 24032349 24032370 -135567413 + AT_rich Low_complexity Low_complexity 1 21 0 5 768 27 0 0 0 chr3 24032761 24032788 -135566995 + AT_rich Low_complexity Low_complexity 1 27 0 5 768 648 261 89 0 chr3 24032957 24033114 -135566669 + B3 SINE B2 2 172 -44 5 768 1118 188 54 0 chr3 24033391 24033615 -135566168 + Lx2 LINE L1 6761 6996 -1 5 768 3258 175 3 7 chr3 24033646 24034215 -135565568 + ORR1A3-int LTR MaLR 1031 1597 -366 5 768 1035 88 0 7 chr3 24034215 24034363 -135565420 + L1_Mus1 LINE L1 6415 6561 -6 5 768 1134 61 0 0 chr3 24034407 24034554 -135565229 + (GAAA)n Simple_repeat Simple_repeat 3 149 0 5 768 202 248 41 53 chr3 24034594 24034605 -135565178 + (CATATA)n Simple_repeat Simple_repeat 1 8 0 5 768 240 35 0 0 chr3 24034605 24034634 -135565149 + (TC)n Simple_repeat Simple_repeat 2 30 0 5 768 317 107 90 28 chr3 24034634 24034849 -135564934 + (TA)n Simple_repeat Simple_repeat 1 228 0 5 768 37 39 0 0 chr3 24034849 24034900 -135564883 + AT_rich Low_complexity Low_complexity 1 51 0 6 768 321 26 0 0 chr3 24035869 24035907 -135563876 + (CAAAA)n Simple_repeat Simple_repeat 3 40 0 6 768 4028 252 52 46 chr3 24036007 24037206 -135562577 + Lx7 LINE L1 6206 7411 -285 6 768 618 155 0 0 chr3 24037206 24037322 -135562461 + (TG)n Simple_repeat Simple_repeat 2 117 0 6 768 1032 75 0 81 chr3 24037380 24037540 -135562243 - B1_Mm SINE Alu 0 147 1 6 768 4530 59 2 0 chr3 24037904 24038479 -135561304 + L1Md_F2 LINE L1 6007 6582 0 6 768 382 78 0 0 chr3 24038494 24038545 -135561238 + Lx7 LINE L1 6632 6682 -1014 6 768 567 271 33 42 chr3 24039373 24039674 -135560109 + MTEb LTR MaLR 1 377 -2 6 768 22 0 0 0 chr3 24039756 24039778 -135560005 + AT_rich Low_complexity Low_complexity 1 22 0 6 768 25 0 0 0 chr3 24039840 24039865 -135559918 + AT_rich Low_complexity Low_complexity 1 25 0 6 768 296 381 63 0 chr3 24040101 24040227 -135559556 + RSINE1 SINE B4 3 136 -29 7 768 32 57 0 0 chr3 24040232 24040285 -135559498 + AT_rich Low_complexity Low_complexity 1 53 0 7 768 216 0 0 0 chr3 24041614 24041638 -135558145 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 7 768 31 0 0 0 chr3 24042724 24042755 -135557028 + AT_rich Low_complexity Low_complexity 1 31 0 7 768 1185 74 0 0 chr3 24042870 24043018 -135556765 + B1_Mus1 SINE Alu 1 148 0 7 768 225 0 0 0 chr3 24043169 24043194 -135556589 + (CA)n Simple_repeat Simple_repeat 2 26 0 7 768 258 156 0 0 chr3 24043768 24043813 -135555970 + T-rich Low_complexity Low_complexity 1 45 0 7 768 22 35 0 0 chr3 24043986 24044015 -135555768 + AT_rich Low_complexity Low_complexity 1 29 0 7 768 321 26 0 0 chr3 24044666 24044704 -135555079 + (TG)n Simple_repeat Simple_repeat 2 39 0 7 768 1406 282 33 83 chr3 24045004 24045488 -135554295 + RLTR18 LTR ERVK 153 612 -4 7 768 1912 73 0 0 chr3 24045507 24045754 -135554029 + L1_Mus1 LINE L1 6321 6567 0 8 768 23 0 0 0 chr3 24045754 24045777 -135554006 + AT_rich Low_complexity Low_complexity 1 23 0 8 768 3589 57 20 0 chr3 24046612 24047069 -135552714 - L1Md_F2 LINE L1 -368 6214 5749 8 768 2536 85 0 17 chr3 24047069 24047428 -135552355 + L1Md_F2 LINE L1 6217 6569 -13 8 768 185 132 26 0 chr3 24047728 24047766 -135552017 + (TTTA)n Simple_repeat Simple_repeat 4 42 0 8 768 410 316 43 0 chr3 24047813 24047952 -135551831 - RSINE1 SINE B4 -17 148 4 8 768 921 287 68 25 chr3 24048104 24048429 -135551354 - Lx8 LINE L1 -22 7451 7113 8 768 225 0 0 0 chr3 24048834 24048859 -135550924 + (A)n Simple_repeat Simple_repeat 1 25 0 8 768 1112 117 14 0 chr3 24048898 24049155 -135550628 - MusHAL1 LINE L1 -2503 850 588 8 768 1322 205 261 41 chr3 24049159 24049626 -135550157 - RMER6C LTR ERVK -120 570 1 8 768 304 119 0 0 chr3 24049976 24050018 -135549765 - RLTR9E LTR ERVK -331 78 37 8 768 1556 169 72 19 chr3 24050013 24050332 -135549451 - RLTR9E LTR ERVK -73 336 1 9 768 517 68 0 40 chr3 24050334 24050410 -135549373 - ETnERV2-int LTR ERVK -3 7403 7331 9 768 1569 181 107 9 chr3 24050410 24050831 -135548952 - RLTR13D6 LTR ERVK -363 539 51 9 768 405 0 0 0 chr3 24050887 24050932 -135548851 + (CA)n Simple_repeat Simple_repeat 2 46 0 9 768 929 155 0 7 chr3 24051108 24051257 -135548526 + B1_Mus1 SINE Alu 1 148 0 9 768 1021 329 68 58 chr3 24052135 24052838 -135546945 + Lx8 LINE L1 6733 7442 -31 9 768 310 358 83 28 chr3 24053361 24053542 -135546241 - MLT1A0 LTR MaLR -13 352 162 9 768 663 13 0 0 chr3 24053569 24053645 -135546138 + (TTTC)n Simple_repeat Simple_repeat 2 77 0 9 768 823 108 0 0 chr3 24053645 24053765 -135546018 - B1_Mm SINE Alu -9 138 19 9 768 552 100 0 0 chr3 24054005 24054085 -135545698 + (CA)n Simple_repeat Simple_repeat 2 81 0 9 768 445 329 25 19 chr3 24055162 24055320 -135544463 - RSINE1 SINE B4 0 165 7 9 768 531 31 0 0 chr3 24055647 24055712 -135544071 + (CA)n Simple_repeat Simple_repeat 2 66 0 1 768 356 213 16 16 chr3 24055713 24055837 -135543946 + GA-rich Low_complexity Low_complexity 2 125 0 1 768 306 0 0 0 chr3 24057009 24057043 -135542740 + (TC)n Simple_repeat Simple_repeat 1 34 0 1 768 207 0 0 0 chr3 24057043 24057065 -135542718 + (CA)n Simple_repeat Simple_repeat 1 23 0 1 768 1803 217 71 14 chr3 24058106 24058531 -135541252 + Lx7 LINE L1 6164 6612 -1084 1 768 789 31 0 0 chr3 24058824 24058920 -135540863 + (TC)n Simple_repeat Simple_repeat 1 96 0 1 768 207 171 0 0 chr3 24059835 24059870 -135539913 + (CATA)n Simple_repeat Simple_repeat 4 38 0 1 768 22 0 0 0 chr3 24059896 24059918 -135539865 + AT_rich Low_complexity Low_complexity 1 22 0 1 768 309 256 0 83 chr3 24060637 24060734 -135539049 - B3A SINE B2 -125 91 2 1 768 1421 60 22 0 chr3 24061715 24061898 -135537885 - B2_Mm1t SINE B2 -6 187 1 1 768 578 108 0 0 chr3 24061946 24062029 -135537754 - tRNA-Leu-CTG tRNA tRNA -3 83 1 1 768 257 313 48 0 chr3 24062221 24062304 -135537479 - Lx8 LINE L1 -219 7254 7168 1 768 1657 242 24 5 chr3 24064307 24064718 -135535065 + MTD LTR MaLR 1 419 0 1 768 29 0 0 0 chr3 24065349 24065378 -135534405 + AT_rich Low_complexity Low_complexity 1 29 0 1 768 1152 236 48 150 chr3 24065995 24066408 -135533375 - ORR1D1 LTR MaLR -3 371 1 1 768 22 0 0 0 chr3 24066793 24066815 -135532968 + AT_rich Low_complexity Low_complexity 1 22 0 1 768 227 244 0 0 chr3 24066841 24066917 -135532866 + (CA)n Simple_repeat Simple_repeat 1 76 0 1 768 699 158 0 0 chr3 24067540 24067667 -135532116 + (TG)n Simple_repeat Simple_repeat 2 128 0 1 768 336 64 0 1 chr3 24067770 24067820 -135531963 + L1Md_F3 LINE L1 6510 6560 -22 1 768 423 0 0 0 chr3 24067820 24067867 -135531916 + (TAA)n Simple_repeat Simple_repeat 2 48 0 1 768 332 104 0 15 chr3 24067867 24067884 -135531899 + L1Md_F3 LINE L1 6561 6577 -5 1 768 246 62 0 0 chr3 24067912 24067944 -135531839 + (A)n Simple_repeat Simple_repeat 1 32 0 1 768 23 33 0 0 chr3 24068289 24068319 -135531464 + AT_rich Low_complexity Low_complexity 1 30 0 1 768 1074 277 87 48 chr3 24068569 24068982 -135530801 + Lx8 LINE L1 7040 7468 -5 1 768 25 65 0 0 chr3 24068982 24069028 -135530755 + AT_rich Low_complexity Low_complexity 1 46 0 1 768 418 287 52 0 chr3 24070251 24070366 -135529417 + B1F2 SINE Alu 19 139 -10 1 768 212 0 0 35 chr3 24070366 24070395 -135529388 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 1 768 23 0 0 0 chr3 24070418 24070441 -135529342 + AT_rich Low_complexity Low_complexity 1 23 0 1 768 203 136 45 0 chr3 24072294 24072338 -135527445 + (CATATA)n Simple_repeat Simple_repeat 3 48 0 1 768 26 64 0 0 chr3 24072437 24072484 -135527299 + AT_rich Low_complexity Low_complexity 1 47 0 1 768 225 232 98 55 chr3 24072542 24072706 -135527077 - Charlie23a DNA MER1_type -71 268 98 1 768 21 36 0 0 chr3 24072837 24072865 -135526918 + AT_rich Low_complexity Low_complexity 1 28 0 1 768 624 330 39 5 chr3 24073285 24073492 -135526291 - B3 SINE B2 -1 215 2 1 768 189 342 12 12 chr3 24073725 24073805 -135525978 + L2 LINE L2 1346 1425 -1994 1 768 377 283 170 0 chr3 24075365 24075471 -135524312 + RSINE1 SINE B4 2 125 -40 1 768 315 0 0 0 chr3 24075895 24075930 -135523853 + (TTTTA)n Simple_repeat Simple_repeat 3 37 0 1 768 349 310 16 41 chr3 24076407 24076528 -135523255 + RSINE1 SINE B4 3 120 -45 1 768 300 148 0 0 chr3 24076537 24076598 -135523185 + (TC)n Simple_repeat Simple_repeat 2 62 0 1 768 553 222 0 16 chr3 24077087 24077270 -135522513 + (TA)n Simple_repeat Simple_repeat 1 180 0 1 768 439 268 54 0 chr3 24078038 24078150 -135521633 - B3 SINE B2 -8 208 91 1 768 466 362 0 0 chr3 24078201 24078328 -135521455 + RSINE1 SINE B4 15 141 -24 1 768 567 245 80 117 chr3 24078967 24079231 -135520552 - Lx3C LINE L1 -2 6974 6721 1 768 239 345 36 0 chr3 24079804 24079888 -135519895 - B4A SINE B4 -204 88 2 1 768 388 213 16 113 chr3 24079908 24080056 -135519727 - B4A SINE B4 -59 233 97 1 768 338 314 19 13 chr3 24080135 24080293 -135519490 - L1M5 LINE L1 -2056 4090 3932 1 768 2363 153 23 2 chr3 24080434 24080828 -135518955 + ORR1A2-int LTR MaLR 159 560 -1403 1 768 2768 83 3 0 chr3 24080842 24081215 -135518568 + MTA_Mm LTR MaLR 23 396 0 1 768 557 180 0 133 chr3 24081215 24081336 -135518447 + MT2B LTR ERVL 184 287 -314 1 768 7105 153 14 7 chr3 24081295 24082532 -135517251 + ORR1A2-int LTR MaLR 718 1963 0 1 768 2117 138 16 0 chr3 24082532 24082850 -135516933 + ORR1A2 LTR MaLR 1 323 -4 1 768 366 80 0 0 chr3 24083061 24083111 -135516672 + (TA)n Simple_repeat Simple_repeat 1 50 0 1 768 991 324 3 31 chr3 24083575 24083866 -135515917 - B4 SINE B4 -2 290 8 1 768 3429 208 57 19 chr3 24083866 24084645 -135515138 + RMER13B LTR ERVK 1 808 -100 1 768 41157 5 0 0 chr3 24086095 24092463 -135507320 - L1Md_A LINE L1 0 6582 214 1 768 283 323 50 10 chr3 24093940 24094040 -135505743 + B1F2 SINE Alu 1 104 -45 1 768 1038 61 0 0 chr3 24094052 24094199 -135505584 + (TCTA)n Simple_repeat Simple_repeat 4 150 0 1 768 240 125 53 40 chr3 24094201 24094276 -135505507 + (TATATG)n Simple_repeat Simple_repeat 5 80 0 1 768 360 0 0 0 chr3 24096424 24096464 -135503319 + (TG)n Simple_repeat Simple_repeat 1 40 0 1 768 198 0 0 0 chr3 24096464 24096485 -135503298 + (CG)n Simple_repeat Simple_repeat 2 23 0 1 768 477 0 0 0 chr3 24097016 24097069 -135502714 + (TA)n Simple_repeat Simple_repeat 1 53 0 1 768 233 278 88 44 chr3 24097070 24097183 -135502600 - L1ME2 LINE L1 -92 6072 5955 1 768 2072 206 75 34 chr3 24098780 24099286 -135500497 + RLTR11A2 LTR ERVK 1 527 0 1 768 513 0 0 0 chr3 24101169 24101226 -135498557 + (TA)n Simple_repeat Simple_repeat 2 58 0 1 768 4934 46 3 0 chr3 24101226 24101831 -135497952 - L1Md_F2 LINE L1 -21 6561 5955 1 768 8379 60 1 4 chr3 24101821 24102891 -135496892 - L1_Mm LINE L1 -309 5574 4508 1 768 357 86 0 0 chr3 24104503 24104561 -135495222 + (GTTTG)n Simple_repeat Simple_repeat 2 59 0 1 768 343 287 48 48 chr3 24105807 24105972 -135493811 + RSINE1 SINE B4 1 165 0 1 768 249 33 0 0 chr3 24105983 24106013 -135493770 + (GA)n Simple_repeat Simple_repeat 2 31 0 1 768 270 73 0 0 chr3 24106293 24106334 -135493449 + (A)n Simple_repeat Simple_repeat 1 41 0 1 768 375 260 93 159 chr3 24108470 24108772 -135491011 + B4 SINE B4 4 285 -7 1 768 225 65 0 0 chr3 24109418 24109449 -135490334 + (CAAA)n Simple_repeat Simple_repeat 1 31 0 1 768 423 373 30 0 chr3 24109659 24109828 -135489955 - MER45A DNA Tip100 0 178 5 1 768 265 232 11 99 chr3 24110363 24110454 -135489329 - B4 SINE B4 -68 224 142 1 768 4119 187 23 5 chr3 24110975 24111767 -135488016 - Lx5 LINE L1 -213 5664 4859 1 768 6164 213 41 15 chr3 24111764 24113077 -135486706 + Lx5 LINE L1 5656 7002 -48 1 768 32 81 0 0 chr3 24113760 24113834 -135485949 + AT_rich Low_complexity Low_complexity 1 74 0 1 768 414 326 40 11 chr3 24114246 24114423 -135485360 + B3A SINE B2 1 182 -16 1 768 441 0 0 0 chr3 24114722 24114771 -135485012 + (TC)n Simple_repeat Simple_repeat 2 50 0 1 768 354 23 0 0 chr3 24114771 24114813 -135484970 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 768 645 326 76 47 chr3 24115567 24116053 -135483730 + Lx9 LINE L1 6873 7372 -272 1 768 180 200 0 0 chr3 24116134 24116209 -135483574 + (TCTA)n Simple_repeat Simple_repeat 2 76 0 1 768 234 91 0 0 chr3 24116221 24116254 -135483529 + (CA)n Simple_repeat Simple_repeat 2 34 0 1 768 861 211 53 19 chr3 24116484 24116692 -135483091 + B3 SINE B2 1 215 -1 1 769 7771 194 31 19 chr3 24117970 24120565 -135479218 - Lx2B LINE L1 0 7000 4355 1 769 21 0 0 0 chr3 24121943 24121964 -135477819 + AT_rich Low_complexity Low_complexity 1 21 0 1 769 2931 183 14 23 chr3 24123517 24124076 -135475707 + RLTR20B3 LTR ERVK 21 574 -3 1 769 945 321 40 74 chr3 24124332 24124712 -135475071 + MTEa LTR MaLR 1 367 -12 1 769 405 329 22 0 chr3 24124760 24124897 -135474886 + Lx9 LINE L1 6427 6566 -1078 1 769 272 48 0 23 chr3 24125276 24125319 -135474464 + (TTTG)n Simple_repeat Simple_repeat 2 43 0 1 769 364 373 55 30 chr3 24125875 24126074 -135473709 + Lx9 LINE L1 6372 6575 -1069 1 769 10727 37 1 2 chr3 24126119 24127427 -135472356 + L1Md_F2 LINE L1 4280 5586 -297 1 769 8073 46 2 1 chr3 24127428 24128422 -135471361 + L1Md_F2 LINE L1 5588 6582 0 1 769 251 71 24 0 chr3 24128432 24128474 -135471309 + (CAA)n Simple_repeat Simple_repeat 2 44 0 1 769 719 321 59 21 chr3 24128481 24128856 -135470927 + Lx8 LINE L1 6431 6819 -654 1 769 209 139 28 0 chr3 24129339 24129375 -135470408 + (TATAA)n Simple_repeat Simple_repeat 5 41 0 1 769 468 0 0 0 chr3 24129377 24129429 -135470354 + (TA)n Simple_repeat Simple_repeat 1 52 0 1 769 355 285 15 75 chr3 24130750 24130883 -135468900 - RMER20B LTR ERVK -502 125 1 1 769 3074 79 27 107 chr3 24131186 24131710 -135468073 + RLTR45 LTR ERVK 1 482 0 1 769 4296 72 109 16 chr3 24131710 24132343 -135467440 + RLTR45-int LTR ERVK 1 692 -6552 1 769 1132 51 0 0 chr3 24132641 24132779 -135467004 + RLTR45-int LTR ERVK 681 818 -6426 1 769 269 275 11 11 chr3 24133171 24133263 -135466520 + MMTV-int LTR ERVK 2413 2504 -4749 1 769 11818 40 40 7 chr3 24133556 24135387 -135464396 + RLTR45-int LTR ERVK 1322 3212 -4032 1 769 4005 77 33 30 chr3 24135357 24135962 -135463821 + RLTR45-int LTR ERVK 3380 3986 -3258 1 769 8161 45 2 7 chr3 24135955 24136968 -135462815 + RLTR45-int LTR ERVK 5065 6072 -1172 1 769 2053 97 10 3 chr3 24136990 24137290 -135462493 + RLTR13B1 LTR ERVK 207 508 -385 1 769 7171 49 0 6 chr3 24137290 24138153 -135461630 + RLTR45-int LTR ERVK 6333 7190 -54 1 769 36437 49 22 4 chr3 24138153 24143567 -135456216 + L1Md_T LINE L1 98 5586 -297 1 769 7996 56 0 0 chr3 24143567 24144563 -135455220 + L1Md_T LINE L1 5587 6582 0 1 769 490 32 0 0 chr3 24144601 24144663 -135455120 + RLTR45-int LTR ERVK 7183 7244 0 1 769 3002 88 27 107 chr3 24144663 24145187 -135454596 + RLTR45 LTR ERVK 1 482 0 1 769 231 260 20 10 chr3 24145224 24145325 -135454458 - Lx9 LINE L1 0 7644 7543 1 769 1612 258 14 20 chr3 24145597 24146123 -135453660 + Lx9 LINE L1 5392 5949 -1695 1 769 491 325 48 111 chr3 24146123 24146200 -135453583 + MT2A LTR ERVL 2 82 -451 1 769 246 81 0 0 chr3 24146200 24146237 -135453546 + (TTTG)n Simple_repeat Simple_repeat 4 40 0 1 769 491 325 49 106 chr3 24146237 24146658 -135453125 + MT2A LTR ERVL 83 535 -49 1 769 240 35 0 0 chr3 24146658 24146687 -135453096 + (CA)n Simple_repeat Simple_repeat 1 29 0 2 769 359 326 68 20 chr3 24146687 24146729 -135453054 + MT2A LTR ERVL 536 584 0 1 769 337 155 158 42 chr3 24146765 24146851 -135452932 + B1_Mur4 SINE Alu 49 150 0 2 769 483 48 0 0 chr3 24146855 24146917 -135452866 + (CA)n Simple_repeat Simple_repeat 1 62 0 2 769 353 294 11 0 chr3 24147043 24147160 -135452623 + Lx9 LINE L1 6955 7057 -416 1 769 471 250 81 9 chr3 24147157 24147367 -135452416 + Lx9 LINE L1 7263 7487 -157 1 769 186 71 0 0 chr3 24147498 24147526 -135452257 + (TTTTA)n Simple_repeat Simple_repeat 2 29 0 2 769 1050 331 38 32 chr3 24147612 24148142 -135451641 + MER67C LTR ERV1 179 711 0 2 769 180 219 0 0 chr3 24148512 24148553 -135451230 + GA-rich Low_complexity Low_complexity 1 41 0 2 769 206 227 15 0 chr3 24148556 24148622 -135451161 + (TG)n Simple_repeat Simple_repeat 2 68 0 2 769 469 336 61 29 chr3 24148639 24148884 -135450899 - B4A SINE B4 -12 280 28 2 769 536 353 25 69 chr3 24148963 24149240 -135450543 - MTEa LTR MaLR -6 373 109 2 769 432 0 0 0 chr3 24149258 24149306 -135450477 + (TA)n Simple_repeat Simple_repeat 1 48 0 2 769 635 214 0 0 chr3 24149309 24149421 -135450362 + B1_Mur4 SINE Alu 30 141 -9 2 769 184 137 39 0 chr3 24149436 24149487 -135450296 + (TA)n Simple_repeat Simple_repeat 1 53 0 2 769 983 304 25 41 chr3 24150261 24150628 -135449155 + MTE2b LTR MaLR 7 367 -12 2 769 651 268 40 1 chr3 24151103 24151282 -135448501 - B3A SINE B2 -27 189 2 2 769 530 194 32 115 chr3 24151844 24152001 -135447782 - ORR1A0 LTR MaLR 0 346 203 2 769 32 26 0 0 chr3 24154444 24154483 -135445300 + AT_rich Low_complexity Low_complexity 1 39 0 2 769 428 252 44 53 chr3 24155190 24155303 -135444480 + RLTR23 LTR ERV1 8 119 -311 2 769 686 324 60 54 chr3 24155362 24155695 -135444088 + RLTR23 LTR ERV1 93 427 -3 2 769 11744 115 20 8 chr3 24155756 24158417 -135441366 - L1_Mus3 LINE L1 0 6638 3927 2 769 3198 153 24 15 chr3 24158411 24159465 -135440318 + L1VL4 LINE L1 257 1321 -2238 2 769 25 99 0 0 chr3 24159465 24159546 -135440237 + AT_rich Low_complexity Low_complexity 1 81 0 2 769 999 56 14 14 chr3 24160992 24161138 -135438645 + L1Md_F3 LINE L1 6438 6583 -1 2 769 216 0 0 0 chr3 24161541 24161565 -135438218 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2 769 1154 75 0 0 chr3 24161736 24161883 -135437900 - B1_Mm SINE Alu 0 147 1 2 769 25 31 0 0 chr3 24162550 24162582 -135437201 + AT_rich Low_complexity Low_complexity 1 32 0 2 769 553 299 132 36 chr3 24162589 24162891 -135436892 - Lx8 LINE L1 -31 7442 7112 2 769 356 55 18 0 chr3 24163244 24163299 -135436484 + (TTTTG)n Simple_repeat Simple_repeat 2 57 0 2 769 321 47 0 0 chr3 24163728 24163771 -135436012 + (CA)n Simple_repeat Simple_repeat 2 44 0 2 769 2284 192 6 15 chr3 24163874 24164345 -135435438 - Lx LINE L1 0 6654 6188 2 769 201 186 41 41 chr3 24165945 24166018 -135433765 + (TTTG)n Simple_repeat Simple_repeat 2 74 0 2 769 722 228 49 36 chr3 24166747 24166970 -135432813 - URR1A DNA MER1_type 0 226 1 2 769 6379 223 39 8 chr3 24167072 24168447 -135431336 + Lx5 LINE L1 5621 7037 -13 2 769 30 45 0 0 chr3 24168447 24168491 -135431292 + AT_rich Low_complexity Low_complexity 1 44 0 2 769 302 225 0 0 chr3 24169490 24169570 -135430213 + Lx3C LINE L1 6894 6973 -3 2 769 27 0 0 0 chr3 24169572 24169599 -135430184 + AT_rich Low_complexity Low_complexity 1 27 0 2 769 593 343 0 24 chr3 24170096 24170266 -135429517 - MTEa LTR MaLR -212 167 2 2 769 362 197 84 0 chr3 24171179 24171250 -135428533 - 4.5SRNA scRNA scRNA -15 79 3 2 769 3612 169 61 19 chr3 24171252 24171953 -135427830 + Lx3B LINE L1 6238 6968 -5 2 769 3330 92 30 8 chr3 24171973 24172443 -135427340 + L1Md_F2 LINE L1 6101 6580 -2 2 769 25 0 0 0 chr3 24172443 24172468 -135427315 + AT_rich Low_complexity Low_complexity 1 25 0 2 769 1720 201 16 91 chr3 24172938 24173346 -135426437 + ORR1B1 LTR MaLR 18 392 -2 2 769 6176 212 28 53 chr3 24173348 24174898 -135424885 + ORR1B1-int LTR MaLR 1 1511 -452 2 769 454 192 20 10 chr3 24174896 24174996 -135424787 + ORR1B1 LTR MaLR 267 367 0 2 769 220 368 28 28 chr3 24175075 24175184 -135424599 + ID_B1 SINE B4 91 199 -25 2 769 1524 227 6 6 chr3 24175862 24176194 -135423589 - Lx2B LINE L1 0 7000 6669 2 769 392 253 0 0 chr3 24177238 24177313 -135422470 + URR1A DNA MER1_type 5 79 -147 2 769 521 177 0 9 chr3 24179100 24179214 -135420569 + GA-rich Low_complexity Low_complexity 4 116 0 2 769 510 126 0 0 chr3 24179489 24179576 -135420207 + MusHAL1 LINE L1 2205 2291 -421 2 769 306 0 0 0 chr3 24179576 24179610 -135420173 + (A)n Simple_repeat Simple_repeat 1 34 0 2 769 370 407 26 17 chr3 24179626 24179856 -135419927 - MLT1F2 LTR MaLR -279 281 50 2 769 21 57 0 0 chr3 24182976 24183011 -135416772 + AT_rich Low_complexity Low_complexity 1 35 0 2 769 369 306 44 85 chr3 24183582 24183900 -135415883 - L1MC5 LINE L1 -738 7223 6919 2 769 26 0 0 0 chr3 24183966 24183992 -135415791 + AT_rich Low_complexity Low_complexity 1 26 0 2 769 623 334 54 22 chr3 24185914 24186324 -135413459 - L1M2 LINE L1 -1688 4455 4033 2 769 27 49 0 0 chr3 24186465 24186506 -135413277 + AT_rich Low_complexity Low_complexity 1 41 0 2 769 277 197 28 14 chr3 24187623 24187695 -135412088 + CT-rich Low_complexity Low_complexity 2 74 0 2 769 269 333 48 0 chr3 24187701 24187785 -135411998 + LTR40a LTR ERVL 58 145 -374 2 769 893 260 148 43 chr3 24187828 24188266 -135411517 + RLTR20B2 LTR ERVK 20 503 -57 2 769 25 0 0 0 chr3 24188279 24188304 -135411479 + AT_rich Low_complexity Low_complexity 1 25 0 2 769 31708 87 14 6 chr3 24188304 24193451 -135406332 + L1Md_F2 LINE L1 398 5585 -298 2 769 6805 78 54 4 chr3 24193452 24194401 -135405382 + L1Md_F2 LINE L1 5587 6582 0 2 769 284 377 12 6 chr3 24195346 24195514 -135404269 + CT-rich Low_complexity Low_complexity 3 171 0 2 769 957 323 8 0 chr3 24195717 24195977 -135403806 + MTE2b LTR MaLR 3 264 -115 2 769 248 154 19 0 chr3 24196130 24196182 -135403601 + CT-rich Low_complexity Low_complexity 2 54 0 2 769 267 31 0 0 chr3 24196183 24196215 -135403568 + (TG)n Simple_repeat Simple_repeat 1 32 0 2 769 404 362 24 0 chr3 24196219 24196346 -135403437 - RSINE1 SINE B4 -18 147 18 2 769 1969 239 15 114 chr3 24196417 24197093 -135402690 + RMER19C LTR ERVK 1 609 -2 2 769 2121 200 7 8 chr3 24197406 24197893 -135401890 + L1VL4 LINE L1 481 954 -5348 2 769 426 160 93 19 chr3 24197893 24198001 -135401782 + URR1B DNA MER1_type 110 225 0 2 769 484 216 21 0 chr3 24198001 24198098 -135401685 + MTE2b LTR MaLR 286 384 0 2 769 348 281 0 43 chr3 24198186 24198279 -135401504 + B4A SINE B4 2 90 -202 2 769 21 0 0 0 chr3 24198409 24198430 -135401353 + AT_rich Low_complexity Low_complexity 1 21 0 2 769 207 278 181 0 chr3 24198721 24198793 -135400990 - L2c LINE L2 0 3426 3328 2 769 23 33 0 0 chr3 24198947 24198977 -135400806 + AT_rich Low_complexity Low_complexity 1 30 0 2 769 492 330 40 35 chr3 24199419 24199465 -135400318 - B4A SINE B4 -93 199 153 2 769 2989 167 104 34 chr3 24199465 24200090 -135399693 + RLTR17 LTR ERVK 3 677 -15 2 769 234 62 0 0 chr3 24200090 24200122 -135399661 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 2 769 2989 167 104 34 chr3 24200122 24200140 -135399643 + RLTR17 LTR ERVK 678 691 -1 2 769 492 330 40 35 chr3 24200140 24200291 -135399492 - B4A SINE B4 -140 152 1 2 769 290 308 139 27 chr3 24200887 24201074 -135398709 + ID_B1 SINE B4 4 211 -13 2 769 369 0 0 0 chr3 24201074 24201115 -135398668 + (TAAAA)n Simple_repeat Simple_repeat 1 41 0 2 769 392 309 78 70 chr3 24201266 24201537 -135398246 - B4 SINE B4 -17 275 3 2 769 29 70 0 0 chr3 24201659 24201716 -135398067 + AT_rich Low_complexity Low_complexity 1 57 0 2 769 25 51 0 0 chr3 24201948 24201987 -135397796 + AT_rich Low_complexity Low_complexity 1 39 0 2 769 1086 301 97 13 chr3 24203028 24203480 -135396303 + Lx8 LINE L1 6738 7227 -246 2 769 1159 198 120 43 chr3 24203653 24204027 -135395756 - RMER6B LTR ERVK -58 403 1 2 769 25 65 0 0 chr3 24206602 24206648 -135393135 + AT_rich Low_complexity Low_complexity 1 46 0 2 769 220 320 32 0 chr3 24207300 24207456 -135392327 + (CATATA)n Simple_repeat Simple_repeat 6 166 0 2 769 258 32 0 0 chr3 24208988 24209019 -135390764 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2 769 587 198 10 0 chr3 24209029 24209130 -135390653 - B1_Mur4 SINE Alu -48 102 1 2 769 24 67 0 0 chr3 24209270 24209315 -135390468 + AT_rich Low_complexity Low_complexity 1 45 0 2 769 442 299 14 19 chr3 24209381 24209532 -135390251 + PB1D9 SINE Alu 3 148 -2 2 769 1999 171 18 5 chr3 24210766 24211153 -135388630 + Lx LINE L1 6263 6654 0 2 769 180 77 0 0 chr3 24212720 24212746 -135387037 + (TG)n Simple_repeat Simple_repeat 1 26 0 2 769 943 276 26 29 chr3 24212808 24213080 -135386703 - B4A SINE B4 -20 272 2 2 769 21 57 0 0 chr3 24213214 24213249 -135386534 + AT_rich Low_complexity Low_complexity 1 35 0 2 769 1001 78 0 0 chr3 24213459 24213600 -135386183 - L1_Mus1 LINE L1 0 6567 6427 2 769 451 45 30 0 chr3 24215142 24215208 -135384575 + (CA)n Simple_repeat Simple_repeat 2 69 0 2 769 575 51 0 12 chr3 24216074 24216154 -135383629 + (TC)n Simple_repeat Simple_repeat 1 79 0 2 769 297 0 0 0 chr3 24216154 24216186 -135383597 + (CA)n Simple_repeat Simple_repeat 1 33 0 2 769 256 290 43 0 chr3 24216617 24216710 -135383073 + LTR52 LTR ERVL 1 97 -324 2 769 516 227 124 75 chr3 24216767 24216953 -135382830 + ORR1B1 LTR MaLR 200 394 0 2 769 237 359 73 32 chr3 24217294 24217513 -135382270 + MLT1C LTR MaLR 216 443 -24 2 769 291 54 0 0 chr3 24217733 24217770 -135382013 + (CA)n Simple_repeat Simple_repeat 2 38 0 2 769 1766 32 0 5 chr3 24219030 24219248 -135380535 + L1_Mus1 LINE L1 6351 6567 0 2 769 561 157 111 0 chr3 24219997 24220105 -135379678 - B3 SINE B2 -96 120 1 2 769 392 307 159 15 chr3 24220461 24220656 -135379127 - ID_B1 SINE B4 0 224 2 2 769 207 0 0 0 chr3 24221491 24221514 -135378269 + (TCTG)n Simple_repeat Simple_repeat 2 24 0 3 769 1044 115 112 22 chr3 24221620 24221777 -135378006 + B2_Mm2 SINE B2 2 174 -21 3 769 477 0 0 0 chr3 24221777 24221830 -135377953 + (TG)n Simple_repeat Simple_repeat 2 54 0 3 769 1044 115 112 22 chr3 24221830 24221850 -135377933 + B2_Mm2 SINE B2 175 194 -1 3 769 315 71 0 0 chr3 24221875 24221917 -135377866 + (T)n Simple_repeat Simple_repeat 1 42 0 3 769 526 314 93 19 chr3 24221975 24222189 -135377594 + B4 SINE B4 51 280 -12 3 769 330 337 48 19 chr3 24222727 24222933 -135376850 - MLT1B LTR MaLR -2 388 177 3 769 24 0 0 0 chr3 24225140 24225164 -135374619 + AT_rich Low_complexity Low_complexity 1 24 0 3 769 357 168 113 104 chr3 24225340 24225446 -135374337 + MER3 DNA MER1_type 97 203 -6 3 769 557 250 121 0 chr3 24225722 24225854 -135373929 + Lx6 LINE L1 7008 7155 -305 3 769 371 291 62 158 chr3 24225992 24226315 -135373468 - RMER20B LTR ERVK -114 513 222 3 769 367 276 0 11 chr3 24226336 24226424 -135373359 - B3A SINE B2 -111 87 1 3 769 203 0 37 0 chr3 24226978 24227005 -135372778 + (TTTG)n Simple_repeat Simple_repeat 3 30 0 3 769 182 305 0 48 chr3 24227125 24227187 -135372596 + MIRc SINE MIR 113 171 -97 3 769 407 362 52 31 chr3 24227200 24227394 -135372389 + B3A SINE B2 1 198 0 3 769 34 55 0 0 chr3 24227425 24227480 -135372303 + AT_rich Low_complexity Low_complexity 1 55 0 3 769 516 68 0 0 chr3 24227564 24227637 -135372146 + (TG)n Simple_repeat Simple_repeat 1 73 0 3 769 365 280 191 8 chr3 24227639 24227765 -135372018 - B3A SINE B2 -42 156 8 3 769 3113 195 9 25 chr3 24228192 24228834 -135370949 + Lx4B LINE L1 6422 7053 -5 3 769 23 33 0 0 chr3 24229492 24229522 -135370261 + AT_rich Low_complexity Low_complexity 1 30 0 3 769 351 270 40 0 chr3 24229970 24230070 -135369713 - ID_B1 SINE B4 -9 215 112 3 769 25 0 0 0 chr3 24230123 24230148 -135369635 + AT_rich Low_complexity Low_complexity 1 25 0 3 769 331 320 49 0 chr3 24230576 24230698 -135369085 - MER5A DNA MER1_type 0 189 62 3 769 315 0 0 0 chr3 24232474 24232509 -135367274 + (A)n Simple_repeat Simple_repeat 1 35 0 3 769 285 51 0 0 chr3 24233827 24233866 -135365917 + (TG)n Simple_repeat Simple_repeat 2 40 0 3 769 1411 252 67 18 chr3 24234415 24234803 -135364980 - MTD LTR MaLR -2 417 11 3 769 368 320 41 73 chr3 24234892 24235111 -135364672 - Lx8 LINE L1 -3 7470 7259 3 769 240 246 190 25 chr3 24235121 24235242 -135364541 - Lx9 LINE L1 -436 7208 7068 3 769 609 69 0 0 chr3 24235863 24235950 -135363833 + (CA)n Simple_repeat Simple_repeat 1 87 0 3 769 324 187 26 13 chr3 24235967 24236043 -135363740 - MTD LTR MaLR 0 419 343 3 769 181 0 33 33 chr3 24236198 24236228 -135363555 + (TAAAA)n Simple_repeat Simple_repeat 1 30 0 3 769 364 337 29 41 chr3 24236817 24236987 -135362796 + RMER30 DNA MER1_type 5 172 -30 3 769 2044 125 78 16 chr3 24237167 24237590 -135362193 + RLTR44D LTR ERVK 1 438 -14 3 769 1290 267 23 34 chr3 24237938 24238287 -135361496 + MTD LTR MaLR 46 390 -29 3 769 356 103 17 0 chr3 24239169 24239227 -135360556 + (TCTA)n Simple_repeat Simple_repeat 4 62 0 3 769 268 330 50 8 chr3 24239272 24239391 -135360392 + ID_B1 SINE B4 79 202 -22 3 769 272 250 12 0 chr3 24240166 24240246 -135359537 - MTE2b LTR MaLR 0 379 299 3 769 2203 196 93 57 chr3 24240250 24240718 -135359065 + RLTR20A2 LTR ERVK 1 491 -87 3 769 456 19 0 0 chr3 24240718 24240771 -135359012 + (TG)n Simple_repeat Simple_repeat 2 54 0 3 769 2203 196 93 57 chr3 24240771 24240848 -135358935 + RLTR20A2 LTR ERVK 492 566 -12 3 769 917 308 20 8 chr3 24240859 24241114 -135358669 - MTE2b LTR MaLR -121 258 1 3 769 21 71 0 0 chr3 24241589 24241631 -135358152 + AT_rich Low_complexity Low_complexity 1 42 0 3 769 300 312 84 35 chr3 24242608 24242751 -135357032 + MLT1B LTR MaLR 17 166 -224 3 769 277 330 33 33 chr3 24242761 24242852 -135356931 + B4 SINE B4 5 95 -197 3 769 338 91 0 0 chr3 24242852 24242896 -135356887 + L1Md_F2 LINE L1 5543 5586 -297 3 769 7939 50 3 6 chr3 24242897 24243895 -135355888 + L1Md_F2 LINE L1 5588 6582 0 3 769 372 278 41 6 chr3 24243903 24244073 -135355710 + L1MC LINE L1 5176 5351 -795 3 769 659 12 0 12 chr3 24244073 24244154 -135355629 + (GAA)n Simple_repeat Simple_repeat 3 82 0 3 769 356 364 31 8 chr3 24244155 24244285 -135355498 + B4 SINE B4 86 218 -74 3 769 387 0 0 0 chr3 24244399 24244442 -135355341 + (CA)n Simple_repeat Simple_repeat 2 44 0 3 769 191 36 0 35 chr3 24245009 24245038 -135354745 + (TTG)n Simple_repeat Simple_repeat 3 30 0 3 769 1084 281 16 22 chr3 24245047 24245360 -135354423 + MTD LTR MaLR 12 322 -97 3 769 333 103 0 0 chr3 24245412 24245470 -135354313 + L1_Mus4 LINE L1 6577 6634 -2 3 769 22 0 0 0 chr3 24245470 24245492 -135354291 + AT_rich Low_complexity Low_complexity 1 22 0 3 769 276 77 0 0 chr3 24245591 24245630 -135354153 + (TTTC)n Simple_repeat Simple_repeat 2 40 0 3 769 1132 71 0 0 chr3 24245633 24245774 -135354009 - B1_Mus2 SINE Alu -6 141 1 3 769 212 310 48 96 chr3 24245970 24246095 -135353688 + PB1D9 SINE Alu 1 119 -1 3 769 763 193 15 7 chr3 24246103 24246239 -135353544 + B1F2 SINE Alu 12 148 -1 3 769 7349 114 86 23 chr3 24246270 24247502 -135352281 + Lx3B LINE L1 5664 6973 0 3 769 198 0 0 0 chr3 24247502 24247524 -135352259 + (A)n Simple_repeat Simple_repeat 1 22 0 3 769 27 49 0 0 chr3 24247555 24247596 -135352187 + AT_rich Low_complexity Low_complexity 1 41 0 3 770 3109 47 8 0 chr3 24248947 24249332 -135350451 + L1Md_F2 LINE L1 6182 6569 -13 3 770 423 260 58 63 chr3 24249457 24249662 -135350121 - Lx9 LINE L1 -1546 6098 5895 3 770 215 286 0 0 chr3 24250443 24250520 -135349263 + T-rich Low_complexity Low_complexity 1 77 0 3 770 1155 69 0 0 chr3 24250521 24250666 -135349117 - B1_Mm SINE Alu -2 145 1 3 770 1760 171 9 3 chr3 24251566 24251901 -135347882 - Lx2 LINE L1 -14 6983 6647 3 770 1167 256 122 33 chr3 24252540 24252968 -135346815 + Lx7 LINE L1 7029 7494 -202 3 770 393 22 0 0 chr3 24252981 24253027 -135346756 + (GA)n Simple_repeat Simple_repeat 1 46 0 3 770 265 230 101 22 chr3 24254035 24254124 -135345659 + MTE2b LTR MaLR 171 266 -113 3 770 230 146 24 0 chr3 24254117 24254158 -135345625 + MTE2a LTR MaLR 214 255 -124 3 770 236 186 0 0 chr3 24254153 24254196 -135345587 + MTE2a LTR MaLR 213 255 -124 3 770 212 189 0 0 chr3 24255218 24255255 -135344528 + (TA)n Simple_repeat Simple_repeat 1 37 0 3 770 1184 86 11 0 chr3 24255269 24255443 -135344340 + (GGGGA)n Simple_repeat Simple_repeat 3 178 0 3 770 1110 89 0 51 chr3 24255691 24255868 -135343915 - B2_Mm2 SINE B2 -1 194 27 3 770 1604 21 21 0 chr3 24255882 24256071 -135343712 - B2_Mm1a SINE B2 0 193 1 3 770 32 0 0 0 chr3 24256115 24256147 -135343636 + AT_rich Low_complexity Low_complexity 1 32 0 3 770 7588 72 19 5 chr3 24256171 24257202 -135342581 - L1Md_F2 LINE L1 -6 6576 5553 3 770 22 0 0 0 chr3 24257552 24257574 -135342209 + AT_rich Low_complexity Low_complexity 1 22 0 3 770 412 151 27 0 chr3 24258077 24258150 -135341633 - RMER17B LTR ERVK -1 957 883 3 770 694 282 58 37 chr3 24258166 24258409 -135341374 - Lx6 LINE L1 -26 7434 7187 3 770 544 214 87 11 chr3 24258411 24258533 -135341250 - Lx9 LINE L1 -24 7620 7495 3 770 2988 76 2 2 chr3 24258533 24258929 -135340854 + MTA_Mm LTR MaLR 1 396 0 3 770 544 214 87 11 chr3 24258929 24258990 -135340793 - Lx9 LINE L1 -150 7494 7424 3 770 396 247 0 10 chr3 24258994 24259092 -135340691 + Lx9 LINE L1 6975 7071 -573 3 770 21 0 0 0 chr3 24259996 24260017 -135339766 + AT_rich Low_complexity Low_complexity 1 21 0 3 770 21 36 0 0 chr3 24260206 24260234 -135339549 + AT_rich Low_complexity Low_complexity 1 28 0 3 770 429 310 44 33 chr3 24260365 24260555 -135339228 + MTEa LTR MaLR 164 379 0 3 770 4776 140 8 24 chr3 24261524 24262329 -135337454 + RLTR13D1 LTR ERVK 1 792 -14 3 770 233 242 94 105 chr3 24262513 24262684 -135337099 + LTR73 LTR ERV1 137 305 -267 3 770 366 349 34 0 chr3 24262602 24262751 -135337032 - MLT1A0 LTR MaLR -13 352 199 3 770 554 294 8 0 chr3 24262925 24263044 -135336739 - B1_Mur2 SINE Alu -29 120 1 3 770 227 227 33 22 chr3 24263221 24263311 -135336472 - Lx9 LINE L1 -23 7621 7531 3 770 206 191 32 0 chr3 24263327 24263339 -135336444 + (CAGA)n Simple_repeat Simple_repeat 4 15 0 3 770 444 93 0 0 chr3 24263339 24263414 -135336369 + (CAGAGA)n Simple_repeat Simple_repeat 2 76 0 3 770 206 191 32 0 chr3 24263414 24263464 -135336319 + (CAGA)n Simple_repeat Simple_repeat 4 55 0 3 770 567 285 8 0 chr3 24263640 24263763 -135336020 + RSINE1 SINE B4 9 132 -33 3 770 910 84 53 0 chr3 24263814 24264043 -135335740 + (TAGA)n Simple_repeat Simple_repeat 1 241 0 3 770 243 0 0 0 chr3 24264566 24264593 -135335190 + (TG)n Simple_repeat Simple_repeat 2 28 0 3 770 543 194 5 30 chr3 24264706 24264914 -135334869 + C-rich Low_complexity Low_complexity 1 202 0 3 770 976 96 0 48 chr3 24264915 24265101 -135334682 + (TCTCCC)n Simple_repeat Simple_repeat 2 178 0 3 770 4974 67 3 0 chr3 24265365 24266005 -135333778 - L1Md_F2 LINE L1 0 6582 5941 3 770 360 0 0 0 chr3 24266227 24266267 -135333516 + (TTTA)n Simple_repeat Simple_repeat 2 41 0 3 770 451 280 24 16 chr3 24266278 24266405 -135333378 - B1_Mm SINE Alu -1 146 19 3 770 22 70 0 0 chr3 24266752 24266795 -135332988 + AT_rich Low_complexity Low_complexity 1 43 0 3 770 24296 127 72 14 chr3 24267179 24273233 -135326550 + L1_Mus3 LINE L1 217 6638 0 3 770 247 294 77 22 chr3 24273675 24273856 -135325927 - L1M5 LINE L1 -297 5867 5677 3 770 246 235 24 0 chr3 24274189 24274274 -135325509 + (TG)n Simple_repeat Simple_repeat 1 87 0 3 770 279 161 0 0 chr3 24275208 24275264 -135324519 + (TGGA)n Simple_repeat Simple_repeat 2 57 0 4 770 234 128 0 0 chr3 24275502 24275541 -135324242 + (CA)n Simple_repeat Simple_repeat 1 39 0 4 770 23 33 0 0 chr3 24276255 24276285 -135323498 + AT_rich Low_complexity Low_complexity 1 30 0 4 770 191 268 10 0 chr3 24276435 24276532 -135323251 + (TG)n Simple_repeat Simple_repeat 2 99 0 4 770 24 32 0 0 chr3 24276832 24276863 -135322920 + AT_rich Low_complexity Low_complexity 1 31 0 4 770 11400 176 87 27 chr3 24277523 24278229 -135321554 + Lx5 LINE L1 892 1708 -4169 4 770 1138 68 7 0 chr3 24278229 24278375 -135321408 + B1_Mm SINE Alu 1 147 0 4 770 11400 176 103 53 chr3 24278375 24280960 -135318823 + Lx5 LINE L1 1709 4438 -1439 4 770 6363 210 24 19 chr3 24280964 24282503 -135317280 + Lx5 LINE L1 5405 6964 -86 4 770 484 59 0 0 chr3 24282503 24282571 -135317212 - L1Md_F2 LINE L1 -12 6570 6503 4 770 6363 224 27 23 chr3 24282571 24282664 -135317119 + Lx5 LINE L1 6965 7050 0 4 770 7894 93 11 2 chr3 24284423 24286206 -135313577 - L1Md_F2 LINE L1 -8 6574 4754 4 770 6993 83 23 8 chr3 24286403 24287429 -135312354 - L1_Mus1 LINE L1 -2 6565 5526 4 770 21 36 0 0 chr3 24287436 24287464 -135312319 + AT_rich Low_complexity Low_complexity 1 28 0 4 770 389 371 0 0 chr3 24287759 24287875 -135311908 + RSINE1 SINE B4 2 117 -48 4 770 189 0 0 0 chr3 24287923 24287944 -135311839 + (CA)n Simple_repeat Simple_repeat 1 21 0 4 770 23 33 0 0 chr3 24287947 24287977 -135311806 + AT_rich Low_complexity Low_complexity 1 30 0 4 770 26 0 0 0 chr3 24288032 24288058 -135311725 + AT_rich Low_complexity Low_complexity 1 26 0 4 770 741 79 0 0 chr3 24288069 24288170 -135311613 + (TA)n Simple_repeat Simple_repeat 2 102 0 4 770 515 235 37 36 chr3 24288266 24288499 -135311284 + L1_Mur3 LINE L1 4177 4419 -1721 4 770 980 301 87 19 chr3 24288637 24289216 -135310567 + L1_Mur3 LINE L1 5078 5724 -156 4 770 511 279 21 99 chr3 24289544 24289612 -135310171 + B3A SINE B2 7 68 -130 4 770 387 0 0 0 chr3 24289612 24289655 -135310128 + (TTTTG)n Simple_repeat Simple_repeat 2 44 0 4 770 511 278 74 98 chr3 24289655 24289801 -135309982 + B3A SINE B2 69 216 0 4 770 531 333 32 18 chr3 24289820 24290037 -135309746 + B4A SINE B4 3 222 -70 4 770 311 96 0 0 chr3 24290049 24290101 -135309682 + Lx2 LINE L1 6946 6997 0 4 770 369 58 0 0 chr3 24290222 24290274 -135309509 + (CA)n Simple_repeat Simple_repeat 1 52 0 4 770 243 173 0 0 chr3 24291831 24291883 -135307900 + T-rich Low_complexity Low_complexity 1 52 0 4 770 31 0 0 0 chr3 24292178 24292209 -135307574 + AT_rich Low_complexity Low_complexity 1 31 0 4 770 21 0 0 0 chr3 24293329 24293350 -135306433 + AT_rich Low_complexity Low_complexity 1 21 0 4 770 3254 138 72 7 chr3 24293398 24293951 -135305832 + Lx LINE L1 6064 6652 -2 4 770 1699 266 24 4 chr3 24293975 24294428 -135305355 - Lx7 LINE L1 -1193 6503 6042 4 770 414 222 20 0 chr3 24294648 24294747 -135305036 + Lx6 LINE L1 6725 6825 -635 4 770 21 0 0 0 chr3 24294856 24294877 -135304906 + AT_rich Low_complexity Low_complexity 1 21 0 4 770 1149 244 40 22 chr3 24294894 24295167 -135304616 + Lx5 LINE L1 6628 6905 -145 4 770 22 94 0 0 chr3 24295416 24295480 -135304303 + AT_rich Low_complexity Low_complexity 1 64 0 4 770 31 26 0 0 chr3 24295553 24295591 -135304192 + AT_rich Low_complexity Low_complexity 1 38 0 4 770 25 65 0 0 chr3 24296062 24296108 -135303675 + AT_rich Low_complexity Low_complexity 1 46 0 4 770 3135 53 0 2 chr3 24296278 24296677 -135303106 + L1Md_F2 LINE L1 6185 6582 0 4 770 705 250 13 0 chr3 24296677 24296829 -135302954 - Lx6 LINE L1 -921 6539 6386 4 770 2671 207 47 23 chr3 24296831 24297390 -135302393 - RMER4B LTR ERVK -13 572 1 4 770 1400 301 38 40 chr3 24297390 24297889 -135301894 - Lx6 LINE L1 -1069 6391 5894 4 770 1558 110 4 0 chr3 24297889 24298117 -135301666 + L1_Mus3 LINE L1 5654 5882 -756 4 770 4398 16 0 0 chr3 24298117 24298610 -135301173 + MT2_Mm LTR ERVL 1 493 0 4 770 40645 15 14 0 chr3 24298610 24303908 -135295875 + MERVL-int LTR ERVL 1 5371 -114 4 770 363 151 13 40 chr3 24303908 24303984 -135295799 + ORR1A3-int LTR MaLR 567 640 -1323 4 770 314 0 0 0 chr3 24303984 24304022 -135295761 + MERVL-int LTR ERVL 5448 5485 0 4 770 4398 16 0 0 chr3 24304022 24304515 -135295268 + MT2_Mm LTR ERVL 1 493 0 4 770 5348 87 13 7 chr3 24304516 24305272 -135294511 + L1_Mus3 LINE L1 5878 6638 0 4 770 5235 199 51 9 chr3 24305297 24306471 -135293312 - Lx6 LINE L1 0 5880 4658 4 770 1585 211 31 66 chr3 24306464 24306845 -135292938 - Lx2B LINE L1 -95 6905 6538 4 770 225 284 18 49 chr3 24307150 24307313 -135292470 + T-rich Low_complexity Low_complexity 2 159 0 4 770 43 76 0 0 chr3 24307680 24307772 -135292011 + AT_rich Low_complexity Low_complexity 1 92 0 4 770 427 361 0 0 chr3 24307826 24307956 -135291827 - RSINE1 SINE B4 -33 132 3 4 770 21 0 0 0 chr3 24308519 24308540 -135291243 + AT_rich Low_complexity Low_complexity 1 21 0 4 770 853 297 48 4 chr3 24308683 24308953 -135290830 + Lx8 LINE L1 6309 6590 -883 4 770 241 265 0 0 chr3 24309013 24309062 -135290721 - B3A SINE B2 -143 55 7 4 770 36 40 0 0 chr3 24309076 24309126 -135290657 + AT_rich Low_complexity Low_complexity 1 50 0 4 770 903 259 167 86 chr3 24309230 24309787 -135289996 + RMER20B LTR ERVK 1 602 -25 4 770 240 35 0 0 chr3 24310017 24310046 -135289737 + (TA)n Simple_repeat Simple_repeat 1 29 0 4 770 5668 183 7 10 chr3 24310194 24311319 -135288464 + L1_Mur2 LINE L1 3185 4306 -1571 4 770 759 52 0 0 chr3 24311327 24311423 -135288360 + (TC)n Simple_repeat Simple_repeat 1 96 0 4 770 381 253 36 0 chr3 24311454 24311537 -135288246 - B1F2 SINE Alu -61 88 3 4 770 255 292 58 85 chr3 24311537 24311599 -135288184 - MT2B LTR ERVL -424 160 104 4 770 270 0 0 0 chr3 24312166 24312196 -135287587 + (TC)n Simple_repeat Simple_repeat 1 30 0 4 770 2149 102 52 26 chr3 24312581 24312925 -135286858 - MTB_Mm LTR MaLR 0 407 55 4 770 979 109 7 0 chr3 24312976 24313101 -135286682 + L1_Mm LINE L1 5461 5586 -297 4 770 8252 37 4 1 chr3 24313101 24314096 -135285687 + L1Md_F3 LINE L1 5587 6584 0 4 770 979 109 7 0 chr3 24314096 24314108 -135285675 + L1_Mm LINE L1 5587 5598 -285 4 770 22 70 0 0 chr3 24314370 24314413 -135285370 + AT_rich Low_complexity Low_complexity 1 43 0 4 770 315 390 32 23 chr3 24314586 24314804 -135284979 - MTE2a LTR MaLR -158 221 2 4 770 213 303 11 11 chr3 24314969 24315059 -135284724 + (TG)n Simple_repeat Simple_repeat 1 90 0 4 770 24 85 0 0 chr3 24315254 24315313 -135284470 + AT_rich Low_complexity Low_complexity 1 59 0 4 770 234 217 72 65 chr3 24315605 24315743 -135284040 - RLTR40 LTR ERVK -118 699 561 4 770 432 0 0 0 chr3 24317111 24317159 -135282624 + (CA)n Simple_repeat Simple_repeat 1 48 0 4 770 344 344 68 6 chr3 24317229 24317390 -135282393 + B4A SINE B4 106 276 -16 4 770 332 336 13 14 chr3 24317540 24317692 -135282091 - MLT1A LTR MaLR 0 374 239 4 770 603 81 0 0 chr3 24317723 24317809 -135281974 + (GA)n Simple_repeat Simple_repeat 1 86 0 4 770 356 311 77 43 chr3 24318096 24318331 -135281452 + Lx9 LINE L1 7122 7364 -280 4 770 195 129 0 0 chr3 24318461 24318492 -135281291 + (TG)n Simple_repeat Simple_repeat 2 32 0 4 770 25 51 0 0 chr3 24318685 24318724 -135281059 + AT_rich Low_complexity Low_complexity 1 39 0 4 770 366 315 38 89 chr3 24318769 24318926 -135280857 - RSINE1 SINE B4 0 165 17 4 770 238 260 60 40 chr3 24318899 24318999 -135280784 - MamGypLTR1a LTR Gypsy -635 149 48 4 770 21 0 0 0 chr3 24319012 24319033 -135280750 + AT_rich Low_complexity Low_complexity 1 21 0 4 770 459 0 0 0 chr3 24319835 24319886 -135279897 + (TG)n Simple_repeat Simple_repeat 1 51 0 4 770 378 0 0 0 chr3 24320405 24320447 -135279336 + (CA)n Simple_repeat Simple_repeat 2 43 0 4 770 676 297 99 43 chr3 24320573 24320784 -135278999 + MTE2a LTR MaLR 56 278 -101 4 770 423 0 0 0 chr3 24320862 24320909 -135278874 + (TCTA)n Simple_repeat Simple_repeat 1 47 0 4 770 1891 132 3 16 chr3 24320915 24321223 -135278560 - Lx3A LINE L1 -16 6965 6662 4 770 302 298 128 0 chr3 24321967 24322061 -135277722 + PB1D9 SINE Alu 3 108 -12 4 770 417 39 0 0 chr3 24322991 24323042 -135276741 + (TA)n Simple_repeat Simple_repeat 2 52 0 4 770 279 0 0 0 chr3 24323042 24323072 -135276711 + (TG)n Simple_repeat Simple_repeat 2 32 0 4 770 333 0 0 0 chr3 24324450 24324487 -135275296 + (TG)n Simple_repeat Simple_repeat 2 38 0 4 770 390 85 0 0 chr3 24325266 24325325 -135274458 + (CA)n Simple_repeat Simple_repeat 2 60 0 4 770 15410 175 64 110 chr3 24325734 24326808 -135272975 + L1_Mus4 LINE L1 1994 3080 -2803 4 770 2732 71 13 38 chr3 24326808 24326904 -135272879 + IAPEY_LTR LTR ERVK 1 100 -285 4 770 5595 37 0 9 chr3 24326904 24327586 -135272197 + L1Md_T LINE L1 5907 6582 0 4 770 2732 71 13 38 chr3 24327586 24327884 -135271899 + IAPEY_LTR LTR ERVK 101 385 0 4 770 15410 175 64 110 chr3 24327884 24329501 -135270282 + L1_Mus4 LINE L1 3081 4730 -1153 4 770 264 59 0 0 chr3 24329501 24329535 -135270248 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 4 770 15410 161 38 75 chr3 24329535 24330721 -135269062 + L1_Mus4 LINE L1 4731 6078 -558 4 770 1861 111 38 71 chr3 24330720 24331060 -135268723 + L1_Mus4 LINE L1 6320 6648 -6 4 770 259 261 14 0 chr3 24333055 24333124 -135266659 + (TATG)n Simple_repeat Simple_repeat 3 72 0 4 770 429 70 0 0 chr3 24333127 24333184 -135266599 + (TG)n Simple_repeat Simple_repeat 1 57 0 4 770 360 352 5 93 chr3 24333204 24333398 -135266385 - B4A SINE B4 -9 283 107 4 770 399 382 64 27 chr3 24333574 24333902 -135265881 + ORR1D2 LTR MaLR 19 358 -12 4 770 667 335 76 27 chr3 24334052 24334380 -135265403 + MLT1A0 LTR MaLR 22 365 0 4 770 22 0 0 0 chr3 24334765 24334787 -135264996 + AT_rich Low_complexity Low_complexity 1 22 0 4 770 396 0 0 0 chr3 24335575 24335619 -135264164 + (CA)n Simple_repeat Simple_repeat 1 44 0 4 770 450 0 0 0 chr3 24335619 24335668 -135264115 + (GA)n Simple_repeat Simple_repeat 2 51 0 4 770 6001 186 92 16 chr3 24335724 24337203 -135262580 + Lx3C LINE L1 5407 6974 -2 4 770 551 272 25 0 chr3 24337282 24337440 -135262343 - Lx9 LINE L1 -1073 6571 6410 4 770 315 264 11 21 chr3 24337713 24337806 -135261977 - Lx9 LINE L1 -1668 5976 5885 4 770 216 67 0 0 chr3 24337806 24337836 -135261947 + (AGGGGG)n Simple_repeat Simple_repeat 4 33 0 4 770 27 62 0 0 chr3 24337977 24338025 -135261758 + AT_rich Low_complexity Low_complexity 1 48 0 4 770 1105 318 40 29 chr3 24338335 24338829 -135260954 + Lx9 LINE L1 6712 7296 -348 4 770 468 51 0 0 chr3 24338849 24338908 -135260875 + (TG)n Simple_repeat Simple_repeat 2 60 0 5 770 355 248 0 50 chr3 24341119 24341238 -135258545 - L1M3 LINE L1 -517 5780 5668 5 770 294 244 26 0 chr3 24341252 24341330 -135258453 + (TATATG)n Simple_repeat Simple_repeat 5 84 0 5 770 265 308 0 0 chr3 24342031 24342135 -135257648 - L1M3 LINE L1 -1339 4801 4698 5 770 702 333 23 13 chr3 24342346 24342656 -135257127 - Lx7 LINE L1 -329 7367 7055 5 770 21 0 0 0 chr3 24343347 24343368 -135256415 + AT_rich Low_complexity Low_complexity 1 21 0 5 770 4205 59 2 4 chr3 24343529 24344058 -135255725 - L1Md_F2 LINE L1 -1 6581 6054 5 770 529 253 106 33 chr3 24345042 24345222 -135254561 - B3A SINE B2 -5 193 1 5 770 21 0 0 0 chr3 24347172 24347193 -135252590 + AT_rich Low_complexity Low_complexity 1 21 0 5 770 225 211 0 0 chr3 24347729 24347781 -135252002 + GA-rich Low_complexity Low_complexity 5 56 0 5 770 296 167 30 0 chr3 24347804 24347870 -135251913 + G-rich Low_complexity Low_complexity 6 73 0 5 770 185 245 0 0 chr3 24348230 24348279 -135251504 + L2 LINE L2 2783 2831 -588 5 770 369 216 0 0 chr3 24348292 24348380 -135251403 + (TAGA)n Simple_repeat Simple_repeat 4 91 0 5 770 426 20 0 0 chr3 24348504 24348555 -135251228 + (TG)n Simple_repeat Simple_repeat 1 51 0 5 770 284 341 9 6 chr3 24348555 24348649 -135251134 - B3 SINE B2 -77 121 27 5 770 279 322 54 71 chr3 24349548 24349732 -135250051 - B3A SINE B2 -16 182 2 5 770 250 256 12 12 chr3 24349823 24349906 -135249877 + GA-rich Low_complexity Low_complexity 1 83 0 5 770 508 360 50 50 chr3 24349916 24350176 -135249607 - B4 SINE B4 -16 276 17 5 770 1984 101 3 14 chr3 24350544 24350835 -135248948 + L1Md_F2 LINE L1 6295 6582 0 5 770 369 357 29 0 chr3 24351433 24351573 -135248210 + RSINE1 SINE B4 9 152 -13 5 770 376 243 7 14 chr3 24351842 24351980 -135247803 + (TATATG)n Simple_repeat Simple_repeat 3 139 0 5 770 23 68 0 0 chr3 24352089 24352133 -135247650 + AT_rich Low_complexity Low_complexity 1 44 0 5 770 315 65 87 0 chr3 24352834 24352880 -135246903 + HAL1-3A_ME LINE L1 1963 2012 -846 5 770 690 230 0 0 chr3 24352880 24353054 -135246729 + (TA)n Simple_repeat Simple_repeat 1 174 0 5 770 192 279 0 0 chr3 24353071 24353132 -135246651 + (CATA)n Simple_repeat Simple_repeat 2 62 0 5 770 230 358 47 47 chr3 24353133 24353303 -135246480 - RLTR22_Mur LTR ERVK -388 1460 1291 5 770 213 197 0 0 chr3 24353305 24353366 -135246417 + GA-rich Low_complexity Low_complexity 1 61 0 5 770 22 35 0 0 chr3 24354009 24354038 -135245745 + AT_rich Low_complexity Low_complexity 1 29 0 5 770 23 33 0 0 chr3 24355637 24355667 -135244116 + AT_rich Low_complexity Low_complexity 1 30 0 5 770 3239 113 19 0 chr3 24356057 24356590 -135243193 + MusHAL1 LINE L1 440 982 -1730 5 770 6234 163 6 14 chr3 24356577 24357969 -135241814 + Lx2 LINE L1 5262 6643 -354 5 770 1360 138 28 0 chr3 24357969 24358186 -135241597 + Lx2 LINE L1 6775 6997 0 5 770 459 0 0 0 chr3 24358531 24358582 -135241201 + (TCTA)n Simple_repeat Simple_repeat 4 54 0 5 770 1097 118 6 0 chr3 24358703 24358864 -135240919 + B2_Mm1t SINE B2 1 162 -31 5 770 225 342 12 25 chr3 24360140 24360221 -135239562 + ID4_ SINE ID 2 81 -2 5 770 2728 110 2 2 chr3 24361576 24361976 -135237807 - MTB LTR MaLR 0 400 1 5 770 321 26 0 0 chr3 24362450 24362488 -135237295 + (TG)n Simple_repeat Simple_repeat 2 39 0 5 770 206 182 23 0 chr3 24362685 24362729 -135237054 + (TA)n Simple_repeat Simple_repeat 1 45 0 5 770 267 54 0 0 chr3 24363286 24363323 -135236460 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 5 770 508 215 11 21 chr3 24363350 24363445 -135236338 - B1_Mur2 SINE Alu -8 141 48 5 770 1726 144 132 3 chr3 24365724 24366064 -135233719 + ORR1C2 LTR MaLR 1 384 0 5 770 1476 300 53 34 chr3 24366082 24366996 -135232787 + Lx9 LINE L1 5319 6088 -1556 5 770 558 346 130 32 chr3 24367012 24367382 -135232401 + MER21B LTR ERV1 409 814 -49 5 770 226 204 18 36 chr3 24368119 24368175 -135231608 + tRNA-Cys-TGY tRNA tRNA 2 56 -19 5 770 486 0 0 0 chr3 24369554 24369608 -135230175 + (TA)n Simple_repeat Simple_repeat 1 54 0 5 770 8137 43 3 5 chr3 24369610 24371070 -135228713 - L1Md_F3 LINE L1 -25 6559 5103 5 770 325 299 144 8 chr3 24371187 24371423 -135228360 + L1M2 LINE L1 4305 4572 -1571 5 770 1757 204 99 5 chr3 24371423 24371808 -135227975 + MTC LTR MaLR 1 421 0 5 770 3749 221 151 22 chr3 24371808 24372917 -135226866 + MTC-int LTR MaLR 2 1255 -3 5 770 1933 201 56 10 chr3 24372920 24373316 -135226467 + MTC LTR MaLR 1 414 -7 5 770 397 269 149 11 chr3 24373336 24373618 -135226165 + L1M2 LINE L1 4610 4930 -1213 5 770 2894 229 66 73 chr3 24373762 24374671 -135225112 - RMER13B LTR ERVK -1 907 5 5 770 403 328 23 8 chr3 24374718 24374850 -135224933 + ID_B1 SINE B4 91 224 0 5 770 25 0 0 0 chr3 24376652 24376677 -135223106 + AT_rich Low_complexity Low_complexity 1 25 0 5 770 200 34 0 33 chr3 24376900 24376930 -135222853 + (TTTC)n Simple_repeat Simple_repeat 3 31 0 5 770 1252 78 0 16 chr3 24376938 24377121 -135222662 - L1Md_F2 LINE L1 -5 6577 6398 5 770 2040 75 0 0 chr3 24377121 24377389 -135222394 - L1_Mus1 LINE L1 -40 6527 6260 5 770 1133 64 0 0 chr3 24377389 24377530 -135222253 - B1_Mus1 SINE Alu -7 141 1 5 770 29 60 0 0 chr3 24377549 24377599 -135222184 + AT_rich Low_complexity Low_complexity 1 50 0 5 770 784 227 45 4 chr3 24377749 24377945 -135221838 - RLTR18B LTR ERVK -419 197 1 5 770 249 33 0 0 chr3 24378458 24378488 -135221295 + (CAAA)n Simple_repeat Simple_repeat 3 32 0 5 770 416 311 42 58 chr3 24378842 24379033 -135220750 - B4A SINE B4 -23 269 82 5 96 268 388 52 0 chr3 24379323 24379457 -135220326 - Lx7 LINE L1 -583 7113 6973 5 771 1495 270 32 37 chr3 24379457 24379918 -135219865 + RLTR16 LTR ERVK 4 462 -43 5 771 256 273 15 0 chr3 24380020 24380086 -135219697 - Lx8 LINE L1 -502 6971 6905 5 771 240 357 48 52 chr3 24380203 24380454 -135219329 + Tigger8 DNA MER2_type 211 460 -206 5 771 1614 222 13 34 chr3 24380599 24380981 -135218802 + ORR1C1 LTR MaLR 1 374 -4 5 771 7133 85 9 21 chr3 24381027 24382196 -135217587 - L1_Mus2 LINE L1 0 6566 5412 5 771 218 173 19 19 chr3 24382593 24382646 -135217137 + (TTATA)n Simple_repeat Simple_repeat 4 56 0 5 771 441 0 0 0 chr3 24382648 24382697 -135217086 + (TC)n Simple_repeat Simple_repeat 2 50 0 5 771 345 47 0 0 chr3 24382698 24382741 -135217042 + (TG)n Simple_repeat Simple_repeat 2 44 0 5 771 524 365 86 12 chr3 24382763 24383018 -135216765 - B4A SINE B4 -8 284 11 5 771 3088 127 7 0 chr3 24383287 24383751 -135216032 + Lx2A LINE L1 6542 7008 0 5 771 653 259 47 12 chr3 24383853 24384025 -135215758 + B3 SINE B2 38 215 -1 5 771 391 286 98 0 chr3 24384883 24385016 -135214767 + MLT1D LTR MaLR 10 155 -350 5 771 447 211 0 0 chr3 24385199 24385355 -135214428 + GA-rich Low_complexity Low_complexity 1 156 0 5 771 186 326 70 20 chr3 24386676 24386776 -135213007 - MIRm SINE MIR -140 136 27 5 771 578 284 20 15 chr3 24387000 24387204 -135212579 + L1M2 LINE L1 5393 5597 -703 5 771 364 232 11 0 chr3 24387298 24387393 -135212390 + L1M2 LINE L1 5652 5747 -553 5 771 583 322 108 42 chr3 24387455 24387695 -135212088 - B4A SINE B4 -6 286 31 5 771 312 342 33 0 chr3 24387738 24387858 -135211925 + MER58B DNA MER1_type 218 341 0 5 771 555 53 0 0 chr3 24388159 24388234 -135211549 + (TATG)n Simple_repeat Simple_repeat 2 76 0 5 771 508 338 13 13 chr3 24388257 24388413 -135211370 - B3A SINE B2 -41 157 2 5 771 1032 249 66 107 chr3 24388497 24388938 -135210845 + RLTR23 LTR ERV1 8 430 0 5 771 211 204 0 0 chr3 24389205 24389259 -135210524 + T-rich Low_complexity Low_complexity 1 54 0 5 771 593 74 0 21 chr3 24389324 24389421 -135210362 + (CAGAGA)n Simple_repeat Simple_repeat 2 96 0 5 771 26 0 0 0 chr3 24389922 24389948 -135209835 + AT_rich Low_complexity Low_complexity 1 26 0 5 771 181 322 178 0 chr3 24389951 24390041 -135209742 - L2c LINE L2 -5 3382 3277 5 771 2420 157 0 44 chr3 24390622 24391075 -135208708 + L1_Mur2 LINE L1 4339 4771 -1106 5 771 23 54 0 0 chr3 24392414 24392451 -135207332 + AT_rich Low_complexity Low_complexity 1 37 0 5 771 812 295 132 29 chr3 24393420 24393762 -135206021 + MTE2a LTR MaLR 1 377 -2 5 771 3214 127 53 2 chr3 24394169 24394365 -135205418 - L1_Mm LINE L1 -97 5786 5566 5 771 2131 89 27 32 chr3 24394365 24394703 -135205080 - L1Md_F2 LINE L1 0 6582 6247 5 771 3214 127 53 2 chr3 24394703 24395011 -135204772 - L1_Mm LINE L1 -318 5565 5257 5 771 5430 92 9 12 chr3 24395016 24395793 -135203990 + L1_Mus1 LINE L1 5793 6567 0 5 771 243 0 0 0 chr3 24395932 24395959 -135203824 + (TG)n Simple_repeat Simple_repeat 1 27 0 5 771 24 0 0 0 chr3 24396074 24396098 -135203685 + AT_rich Low_complexity Low_complexity 1 24 0 5 771 261 188 118 59 chr3 24396369 24396471 -135203312 + MER2 DNA MER2_type 69 176 -169 5 771 214 148 82 0 chr3 24397137 24397198 -135202585 + (TCTA)n Simple_repeat Simple_repeat 4 69 0 5 771 24 32 0 0 chr3 24397562 24397593 -135202190 + AT_rich Low_complexity Low_complexity 1 31 0 5 771 5969 188 32 59 chr3 24397773 24399811 -135199972 + Lx2 LINE L1 4254 6224 -773 5 771 872 74 98 0 chr3 24399811 24399933 -135199850 - B1_Mus2 SINE Alu -13 134 1 5 771 3918 145 3 2 chr3 24399964 24400594 -135199189 + Lx LINE L1 6024 6654 0 5 771 231 349 0 0 chr3 24400789 24400872 -135198911 - L1M1 LINE L1 -371 5929 5847 5 771 422 170 93 36 chr3 24400959 24401077 -135198706 - Lx9 LINE L1 0 7644 7519 5 771 333 68 0 0 chr3 24401077 24401121 -135198662 + (TG)n Simple_repeat Simple_repeat 2 45 0 5 771 634 238 300 15 chr3 24401121 24401445 -135198338 - Lx9 LINE L1 -126 7518 7104 5 771 233 274 0 0 chr3 24401648 24401699 -135198084 + (TGG)n Simple_repeat Simple_repeat 1 51 0 5 771 396 111 0 0 chr3 24401700 24401763 -135198020 + (TG)n Simple_repeat Simple_repeat 1 63 0 6 771 197 159 23 0 chr3 24401763 24401807 -135197976 + GA-rich Low_complexity Low_complexity 2 46 0 6 771 971 228 5 0 chr3 24404391 24404580 -135195203 + RMER19C LTR ERVK 422 611 0 6 771 213 39 0 0 chr3 24404600 24404626 -135195157 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 6 771 596 205 17 0 chr3 24404627 24404744 -135195039 - B1_Mus2 SINE Alu -12 135 17 6 771 232 295 25 37 chr3 24405151 24405232 -135194551 - MER5B DNA MER1_type -4 174 95 6 771 271 338 86 20 chr3 24405755 24405906 -135193877 - MIR SINE MIR -36 226 66 6 771 183 80 0 0 chr3 24405948 24405973 -135193810 + (T)n Simple_repeat Simple_repeat 1 25 0 6 771 197 222 0 43 chr3 24406299 24406346 -135193437 - MER5B DNA MER1_type -39 139 95 6 771 840 314 90 11 chr3 24406498 24406775 -135193008 + MTD LTR MaLR 61 359 -60 6 771 198 0 0 0 chr3 24406790 24406812 -135192971 + (CAA)n Simple_repeat Simple_repeat 3 24 0 6 771 32 0 0 0 chr3 24407071 24407103 -135192680 + AT_rich Low_complexity Low_complexity 1 32 0 6 771 351 0 0 0 chr3 24407268 24407307 -135192476 + (CA)n Simple_repeat Simple_repeat 2 40 0 6 771 22 56 0 0 chr3 24407310 24407346 -135192437 + AT_rich Low_complexity Low_complexity 1 36 0 6 771 247 250 0 0 chr3 24408087 24408135 -135191648 + polypurine Low_complexity Low_complexity 3 50 0 6 771 238 298 73 101 chr3 24408136 24408315 -135191468 - ORR1D2 LTR MaLR -189 181 8 6 771 3367 45 2 7 chr3 24408387 24408808 -135190975 + L1Md_F2 LINE L1 6152 6570 -12 6 771 307 311 145 50 chr3 24409023 24409223 -135190560 + ID_B1 SINE B4 2 220 -4 6 771 244 258 14 57 chr3 24409296 24409366 -135190417 - ID4_ SINE ID -4 79 13 6 771 1702 36 40 0 chr3 24409387 24409610 -135190173 - L1Md_A LINE L1 -2 6580 6349 6 771 1193 48 21 0 chr3 24409610 24409755 -135190028 + L1_Mm LINE L1 5543 5690 -193 6 771 310 219 0 0 chr3 24409757 24409821 -135189962 + MTC LTR MaLR 10 73 -348 6 771 345 225 12 0 chr3 24409821 24409901 -135189882 + Lx5 LINE L1 5977 6057 -993 6 771 381 341 15 0 chr3 24409899 24410034 -135189749 + Lx5 LINE L1 6907 7043 -7 6 771 624 59 0 0 chr3 24410050 24410135 -135189648 + (GGAA)n Simple_repeat Simple_repeat 3 87 0 6 771 357 260 55 80 chr3 24410148 24410311 -135189472 + MTC LTR MaLR 71 229 -192 6 771 1781 148 7 7 chr3 24410311 24410610 -135189173 + Lx LINE L1 6323 6621 -33 6 771 7313 93 14 4 chr3 24410606 24412191 -135187592 + L1_Mus2 LINE L1 4999 6643 -11 6 771 905 214 36 10 chr3 24412206 24412400 -135187383 + MTC LTR MaLR 223 421 0 6 771 412 18 35 0 chr3 24412833 24412890 -135186893 + (TTTTC)n Simple_repeat Simple_repeat 2 60 0 6 771 274 319 41 25 chr3 24413046 24413168 -135186615 + L2a LINE L2 3294 3417 -9 6 771 870 266 24 30 chr3 24414818 24415235 -135184548 + L1M2 LINE L1 5191 5612 -688 6 771 239 244 105 53 chr3 24416573 24416668 -135183115 + Lx8 LINE L1 7290 7389 -84 6 771 253 203 95 0 chr3 24416761 24416835 -135182948 + PB1D9 SINE Alu 40 120 0 6 771 570 63 0 0 chr3 24417540 24417619 -135182164 - L1_Mus1 LINE L1 0 6567 6489 6 771 450 0 0 0 chr3 24417690 24417740 -135182043 + (CA)n Simple_repeat Simple_repeat 1 50 0 6 771 210 118 0 0 chr3 24417817 24417851 -135181932 + (TG)n Simple_repeat Simple_repeat 1 34 0 6 771 26 64 0 0 chr3 24418185 24418232 -135181551 + AT_rich Low_complexity Low_complexity 1 47 0 6 771 291 337 91 5 chr3 24418667 24418864 -135180919 + L3b LINE CR1 112 325 -157 6 771 1741 137 45 104 chr3 24419409 24419783 -135180000 - Lx2 LINE L1 0 6997 6646 6 771 222 37 0 0 chr3 24420111 24420138 -135179645 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 6 771 1310 291 46 75 chr3 24420853 24421413 -135178370 - Lx6 LINE L1 -26 7434 6510 6 771 213 356 78 70 chr3 24422525 24422809 -135176974 - B4A SINE B4 -4 288 3 6 771 320 246 61 9 chr3 24424408 24424523 -135175260 + L1MA9 LINE L1 4343 4463 -1677 6 771 1120 211 7 32 chr3 24424700 24424984 -135174799 - L1_Mur3 LINE L1 -1510 4370 4094 6 771 1479 329 76 35 chr3 24424992 24425678 -135174105 + Lx5 LINE L1 6319 7032 -18 6 771 282 270 94 40 chr3 24425728 24425952 -135173831 + L1MA9 LINE L1 5029 5264 -876 6 771 1784 209 18 52 chr3 24425989 24426373 -135173410 + ORR1C1 LTR MaLR 8 378 0 6 771 256 319 65 7 chr3 24426516 24426655 -135173128 + L1MA9 LINE L1 5448 5594 -718 6 771 1346 222 90 29 chr3 24426687 24427108 -135172675 - Lx9 LINE L1 -5 7639 7193 6 771 634 273 159 22 chr3 24427103 24427380 -135172403 + Lx9 LINE L1 6841 7155 -489 6 771 373 291 64 84 chr3 24427385 24427682 -135172101 + L1MA9 LINE L1 5652 5942 -370 6 771 513 0 0 0 chr3 24427686 24427743 -135172040 + (TA)n Simple_repeat Simple_repeat 2 58 0 6 771 205 215 11 11 chr3 24427973 24428067 -135171716 + CT-rich Low_complexity Low_complexity 1 94 0 6 771 291 307 113 14 chr3 24429657 24429872 -135169911 + Lx7 LINE L1 6929 7156 -540 6 771 237 297 96 35 chr3 24430264 24430379 -135169404 - RMER13A LTR ERVK -399 461 340 6 771 363 272 50 22 chr3 24430406 24430545 -135169238 + Lx7 LINE L1 7553 7695 -1 6 771 1131 119 0 0 chr3 24433550 24433726 -135166057 + (TTTC)n Simple_repeat Simple_repeat 3 178 0 6 771 453 190 8 41 chr3 24434724 24434845 -135164938 - Lx6 LINE L1 0 7460 7344 6 771 251 344 60 42 chr3 24435651 24435818 -135163965 + LTR40b LTR ERVL 53 222 -297 6 771 3079 133 4 4 chr3 24435930 24436390 -135163393 + Lx LINE L1 6081 6540 -114 6 771 474 113 36 45 chr3 24436479 24436590 -135163193 + Lx LINE L1 6545 6654 0 6 771 427 287 67 6 chr3 24436603 24436767 -135163016 + LTR40b LTR ERVL 329 517 -2 6 771 465 259 106 45 chr3 24438554 24438752 -135161031 + B3 SINE B2 1 210 -6 6 771 351 0 0 0 chr3 24440596 24440635 -135159148 + (TG)n Simple_repeat Simple_repeat 1 39 0 6 771 265 347 51 0 chr3 24441344 24441442 -135158341 + B1F SINE Alu 27 129 -20 6 771 335 162 12 0 chr3 24441519 24441599 -135158184 + GA-rich Low_complexity Low_complexity 2 82 0 6 771 293 333 0 9 chr3 24443260 24443369 -135156414 + Lx6 LINE L1 6255 6362 -688 6 771 863 306 147 33 chr3 24443372 24443900 -135155883 + Lx6 LINE L1 6484 7433 -27 6 771 24 32 0 0 chr3 24443957 24443988 -135155795 + AT_rich Low_complexity Low_complexity 1 31 0 6 771 189 271 41 41 chr3 24444428 24444501 -135155282 + L3 LINE CR1 85 157 -4332 6 771 1147 197 24 20 chr3 24444664 24444913 -135154870 + L1_Mur3 LINE L1 4500 4749 -1131 6 771 234 266 49 37 chr3 24445053 24445135 -135154648 + RMER15 LTR ERVL 403 485 -90 6 771 254 318 66 80 chr3 24445263 24445400 -135154383 - RMER30 DNA MER1_type -17 185 51 6 771 343 290 75 22 chr3 24445770 24445904 -135153879 - MTC-int LTR MaLR -1117 141 1 6 771 489 268 10 12 chr3 24445904 24446037 -135153746 - MTC LTR MaLR 0 421 248 6 771 513 32 0 0 chr3 24446037 24446100 -135153683 + (A)n Simple_repeat Simple_repeat 1 63 0 6 771 341 290 10 61 chr3 24446100 24446199 -135153584 - MTC LTR MaLR -120 301 208 6 771 1074 48 27 0 chr3 24446211 24446428 -135153355 - L1Md_F3 LINE L1 0 6584 6419 6 771 349 259 99 18 chr3 24446428 24446610 -135153173 - MTC LTR MaLR -192 229 12 6 771 25 0 0 0 chr3 24446955 24446980 -135152803 + AT_rich Low_complexity Low_complexity 1 25 0 6 771 3498 226 116 1 chr3 24447198 24447999 -135151784 + Lx5 LINE L1 6149 7041 -9 6 771 232 312 121 48 chr3 24448166 24448331 -135151452 + LTR33A LTR ERVL 18 194 -326 6 771 498 322 74 19 chr3 24448529 24448798 -135150985 + B4A SINE B4 1 284 -8 6 771 3524 62 0 4 chr3 24448886 24449338 -135150445 - L1Md_F2 LINE L1 0 6582 6133 6 771 416 351 128 27 chr3 24451099 24451357 -135148426 + B4A SINE B4 3 286 -6 6 771 324 0 0 0 chr3 24451388 24451424 -135148359 + (CA)n Simple_repeat Simple_repeat 1 36 0 6 771 2881 188 41 11 chr3 24451425 24451980 -135147803 + RMER19A LTR ERVK 135 706 -31 6 771 381 70 0 0 chr3 24452059 24452116 -135147667 + (CA)n Simple_repeat Simple_repeat 2 58 0 6 771 423 0 0 0 chr3 24452116 24452162 -135147621 + (GA)n Simple_repeat Simple_repeat 2 48 0 6 771 681 338 66 24 chr3 24453643 24454098 -135145685 - Lx8 LINE L1 -327 7146 6673 6 771 603 325 96 76 chr3 24454100 24454416 -135145367 + Lx8 LINE L1 5842 6166 -1307 6 771 384 22 0 0 chr3 24454416 24454461 -135145322 + (CA)n Simple_repeat Simple_repeat 2 46 0 6 771 261 0 0 0 chr3 24454461 24454489 -135145294 + (GA)n Simple_repeat Simple_repeat 2 30 0 6 771 603 325 96 76 chr3 24454489 24454747 -135145036 + Lx8 LINE L1 6167 6427 -1046 6 771 2734 176 19 39 chr3 24454813 24455385 -135144398 + RLTR31_Mm LTR ERVK 1 561 0 6 771 307 300 140 0 chr3 24455386 24455486 -135144297 + B3 SINE B2 25 138 -78 6 771 520 281 49 88 chr3 24456132 24456358 -135143425 + ORR1E LTR MaLR 143 359 0 6 771 420 228 40 12 chr3 24457967 24458140 -135141643 + (TA)n Simple_repeat Simple_repeat 2 179 0 6 771 24 85 0 0 chr3 24458155 24458214 -135141569 + AT_rich Low_complexity Low_complexity 1 59 0 6 771 2461 42 13 16 chr3 24458455 24458773 -135141010 + L1Md_F2 LINE L1 6265 6581 -1 6 771 965 293 111 23 chr3 24458958 24459311 -135140472 - MTD LTR MaLR -14 405 22 6 771 212 175 0 0 chr3 24459313 24459353 -135140430 + A-rich Low_complexity Low_complexity 1 40 0 6 771 415 337 75 32 chr3 24459663 24459850 -135139933 + B4A SINE B4 44 238 -54 6 771 300 53 0 0 chr3 24460254 24460292 -135139491 + (TATG)n Simple_repeat Simple_repeat 3 40 0 6 771 320 264 148 8 chr3 24460308 24460430 -135139353 - B3A SINE B2 -57 141 3 6 771 32 43 0 0 chr3 24460430 24460476 -135139307 + AT_rich Low_complexity Low_complexity 1 46 0 6 771 21 0 0 0 chr3 24460641 24460662 -135139121 + AT_rich Low_complexity Low_complexity 1 21 0 6 771 792 94 0 0 chr3 24460996 24461102 -135138681 + U6 snRNA snRNA 2 107 0 6 771 708 138 0 0 chr3 24461623 24461739 -135138044 + (TC)n Simple_repeat Simple_repeat 2 117 0 6 771 559 299 16 0 chr3 24461739 24461866 -135137917 + ETnERV2-int LTR ERVK 7074 7202 -204 6 771 320 306 25 13 chr3 24462418 24462577 -135137206 + RMER16-int LTR ERVK 169 329 -6915 6 771 648 0 0 0 chr3 24462759 24462831 -135136952 + (GA)n Simple_repeat Simple_repeat 1 72 0 6 771 1924 171 157 24 chr3 24462831 24463323 -135136460 + RMER16-int LTR ERVK 263 819 -4587 6 771 494 154 133 9 chr3 24463328 24463433 -135136350 + RMER16-int LTR ERVK 1089 1206 -4200 6 771 1027 254 70 21 chr3 24463450 24463736 -135136047 + ETnERV2-int LTR ERVK 2454 2753 -4653 6 771 5820 164 54 117 chr3 24463771 24465292 -135134491 + RLTR45-int LTR ERVK 4296 5712 -1532 7 771 1587 37 0 5 chr3 24465292 24465483 -135134300 + B2_Mm1t SINE B2 2 191 -2 7 771 5820 174 65 89 chr3 24465483 24465896 -135133887 + RLTR45-int LTR ERVK 5713 5907 -1337 7 771 879 275 15 12 chr3 24465885 24466240 -135133543 + RLTR45-int LTR ERVK 7506 7826 -391 7 771 4258 174 27 14 chr3 24466267 24466653 -135133130 + ETnERV2-int LTR ERVK 6493 6876 -530 7 771 1008 71 19 13 chr3 24466653 24466809 -135132974 - L1Md_F3 LINE L1 0 6584 6428 7 771 4258 174 27 14 chr3 24466809 24467123 -135132660 + ETnERV2-int LTR ERVK 6877 7202 -204 7 771 414 0 0 0 chr3 24467508 24467554 -135132229 + (TC)n Simple_repeat Simple_repeat 1 46 0 7 771 532 248 120 29 chr3 24467561 24467769 -135132014 + Lx8 LINE L1 7247 7473 0 7 771 242 116 23 0 chr3 24469076 24469119 -135130664 + (TTTG)n Simple_repeat Simple_repeat 4 47 0 7 771 289 77 0 71 chr3 24470186 24470270 -135129513 + (TTTTTG)n Simple_repeat Simple_repeat 2 79 0 7 771 363 366 92 0 chr3 24471037 24471179 -135128604 + RSINE1 SINE B4 1 155 -10 7 771 252 0 0 0 chr3 24471195 24471223 -135128560 + (CA)n Simple_repeat Simple_repeat 1 28 0 7 771 402 21 0 0 chr3 24471223 24471269 -135128514 + (GA)n Simple_repeat Simple_repeat 2 48 0 7 771 1162 75 0 0 chr3 24472455 24472602 -135127181 + B1_Mus2 SINE Alu 1 147 0 7 771 216 0 0 0 chr3 24472602 24472626 -135127157 + (A)n Simple_repeat Simple_repeat 1 24 0 7 771 189 0 0 0 chr3 24472628 24472649 -135127134 + (CAA)n Simple_repeat Simple_repeat 1 21 0 7 771 456 19 0 0 chr3 24473130 24473183 -135126600 + (CA)n Simple_repeat Simple_repeat 2 54 0 7 771 432 0 0 0 chr3 24473183 24473230 -135126553 + (TA)n Simple_repeat Simple_repeat 2 49 0 7 771 205 161 0 0 chr3 24473244 24473275 -135126508 + (CA)n Simple_repeat Simple_repeat 2 32 0 7 771 7820 59 0 3 chr3 24474241 24475295 -135124488 - L1Md_F2 LINE L1 -12 6570 5521 7 771 266 188 0 0 chr3 24475347 24475395 -135124388 + RLTR20C LTR ERVK 1 48 -493 7 771 524 230 85 14 chr3 24475398 24475539 -135124244 + RLTR20C LTR ERVK 384 534 0 7 771 234 320 37 37 chr3 24476939 24477046 -135122737 + Lx8 LINE L1 7214 7320 -153 7 771 219 88 0 0 chr3 24477877 24477911 -135121872 + (TG)n Simple_repeat Simple_repeat 2 35 0 7 771 456 247 218 17 chr3 24478345 24478476 -135121307 + L1M4 LINE L1 5105 5268 -878 7 771 309 26 0 0 chr3 24478476 24478514 -135121269 + (TA)n Simple_repeat Simple_repeat 2 39 0 7 771 456 247 218 17 chr3 24478514 24478621 -135121162 + L1M4 LINE L1 5269 5391 -755 7 771 228 248 151 17 chr3 24478850 24478969 -135120814 - MER2 DNA MER2_type -131 214 80 7 771 465 225 70 17 chr3 24478971 24479143 -135120640 + L1M4 LINE L1 5636 5816 -362 7 771 793 322 88 8 chr3 24479158 24479509 -135120274 + Lx8 LINE L1 6997 7375 -98 7 771 294 95 0 0 chr3 24479943 24479985 -135119798 + (TG)n Simple_repeat Simple_repeat 1 42 0 7 771 21 71 0 0 chr3 24480199 24480241 -135119542 + AT_rich Low_complexity Low_complexity 1 42 0 7 771 459 35 0 0 chr3 24480254 24480311 -135119472 + (CA)n Simple_repeat Simple_repeat 2 58 0 7 771 5315 70 4 3 chr3 24481262 24481959 -135117824 - L1_Mus2 LINE L1 -1 6565 5868 7 771 3178 97 0 0 chr3 24481959 24482393 -135117390 + L1_Mus2 LINE L1 5431 5864 -19 7 771 353 264 45 9 chr3 24482750 24482861 -135116922 + Kanga1d DNA Tc2 321 435 -174 7 771 363 161 16 0 chr3 24483437 24483499 -135116284 + HAL1-3A_ME LINE L1 1950 2012 -846 7 771 477 90 0 0 chr3 24483499 24483566 -135116217 + (CATATA)n Simple_repeat Simple_repeat 3 69 0 7 771 312 27 0 0 chr3 24484050 24484087 -135115696 + (TAAA)n Simple_repeat Simple_repeat 2 38 0 7 771 735 185 0 0 chr3 24484610 24484756 -135115027 + CT-rich Low_complexity Low_complexity 4 149 0 7 771 4069 130 3 2 chr3 24484848 24485471 -135114312 + Lx2 LINE L1 6370 6993 -4 7 771 432 209 144 23 chr3 24485543 24485675 -135114108 - Lx9 LINE L1 -1107 6537 6390 7 771 1359 226 255 10 chr3 24485677 24486081 -135113702 + Lx9 LINE L1 6526 7028 -616 7 771 578 196 281 0 chr3 24486107 24486306 -135113477 + Lx9 LINE L1 7375 7629 -15 7 771 1434 258 74 18 chr3 24487876 24488267 -135111516 - MTC LTR MaLR -8 413 1 7 771 479 31 15 0 chr3 24488267 24488332 -135111451 + (TCTA)n Simple_repeat Simple_repeat 2 67 0 7 771 2640 190 12 0 chr3 24489348 24489637 -135110146 - Lx5 LINE L1 -969 6081 5790 7 771 374 0 0 21 chr3 24489637 24489684 -135110099 + (TTTG)n Simple_repeat Simple_repeat 3 48 0 7 771 2640 194 49 0 chr3 24489684 24489975 -135109808 - Lx5 LINE L1 -1261 5789 5447 7 771 3928 220 60 27 chr3 24489974 24490890 -135108893 + Lx5 LINE L1 6095 7040 -10 7 771 213 39 0 0 chr3 24490890 24490916 -135108867 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 7 771 183 156 0 0 chr3 24492517 24492549 -135107234 + (TG)n Simple_repeat Simple_repeat 1 32 0 7 771 445 306 78 56 chr3 24492583 24492815 -135106968 - B4A SINE B4 0 292 56 7 771 1070 116 0 0 chr3 24492862 24493009 -135106774 - B1_Mm SINE Alu 0 147 1 7 771 792 0 0 0 chr3 24493011 24493099 -135106684 + (TTTC)n Simple_repeat Simple_repeat 1 88 0 7 771 24 0 0 0 chr3 24493245 24493269 -135106514 + AT_rich Low_complexity Low_complexity 1 24 0 7 771 21 0 0 0 chr3 24494688 24494709 -135105074 + AT_rich Low_complexity Low_complexity 1 21 0 7 771 204 40 0 0 chr3 24495447 24495472 -135104311 + (TTTG)n Simple_repeat Simple_repeat 3 27 0 7 771 18742 150 14 14 chr3 24496252 24500000 -135099783 + L1_Mus4 LINE L1 2434 6171 -465 7 771 2954 117 29 2 chr3 24500000 24500446 -135099337 + L1_Mus4 LINE L1 6172 6629 -7 1 771 693 73 0 0 chr3 24501036 24501132 -135098651 + (CA)n Simple_repeat Simple_repeat 2 97 0 2 771 426 121 0 0 chr3 24501737 24501803 -135097980 + (TAAA)n Simple_repeat Simple_repeat 1 66 0 3 771 24 32 0 0 chr3 24501841 24501872 -135097911 + AT_rich Low_complexity Low_complexity 1 31 0 4 771 6356 138 18 7 chr3 24501911 24503179 -135096604 - Lx LINE L1 -4 6650 5359 5 771 384 314 24 8 chr3 24505955 24506080 -135093703 - B1F SINE Alu 0 149 23 6 771 459 35 0 0 chr3 24506437 24506494 -135093289 + (TAGA)n Simple_repeat Simple_repeat 4 60 0 7 771 3401 20 5 0 chr3 24506621 24507015 -135092768 - MTA_Mm LTR MaLR 0 396 1 8 771 186 212 0 0 chr3 24507592 24507625 -135092158 - L3 LINE CR1 -281 4208 4176 9 771 213 159 23 0 chr3 24508520 24508564 -135091219 + T-rich Low_complexity Low_complexity 1 45 0 1 771 630 89 0 0 chr3 24509105 24509195 -135090588 + (CA)n Simple_repeat Simple_repeat 2 91 0 1 771 1010 144 21 5 chr3 24509342 24509530 -135090253 - Lx2 LINE L1 -1 6996 6806 1 96 708 269 52 40 chr3 24510377 24510833 -135088950 + L1MA9 LINE L1 4540 5006 -1134 1 772 251 323 37 49 chr3 24510930 24511174 -135088609 + L1MA9 LINE L1 5303 5543 -748 1 772 7317 86 3 14 chr3 24511235 24512812 -135086971 + L1_Mus2 LINE L1 5008 6566 0 1 772 241 318 63 19 chr3 24512832 24513037 -135086746 + L1MA9 LINE L1 5571 5784 -528 1 772 470 275 15 15 chr3 24513078 24513211 -135086572 + B1_Mur1 SINE Alu 9 141 -8 1 772 349 353 60 14 chr3 24513237 24513654 -135086129 + L1MA9 LINE L1 5810 6245 -67 1 772 528 347 56 30 chr3 24513827 24514130 -135085653 - Lx8 LINE L1 -729 6744 6434 1 772 769 283 53 0 chr3 24515433 24515620 -135084163 - ID_B1 SINE B4 -11 213 17 1 772 3159 72 5 5 chr3 24515686 24516106 -135083677 - L1_Mus1 LINE L1 0 6567 6148 1 772 26 30 0 0 chr3 24516580 24516613 -135083170 + AT_rich Low_complexity Low_complexity 1 33 0 1 772 396 0 0 0 chr3 24516886 24516930 -135082853 + (GA)n Simple_repeat Simple_repeat 1 44 0 2 772 239 51 0 25 chr3 24517049 24517055 -135082728 + (TAAAAA)n Simple_repeat Simple_repeat 4 9 0 2 772 1103 88 0 0 chr3 24517055 24517202 -135082581 + B1_Mus2 SINE Alu 1 147 0 2 772 239 51 0 25 chr3 24517202 24517235 -135082548 + (TAAAAA)n Simple_repeat Simple_repeat 4 35 0 2 772 25 31 0 0 chr3 24517303 24517335 -135082448 + AT_rich Low_complexity Low_complexity 1 32 0 2 772 35 71 0 0 chr3 24517462 24517532 -135082251 + AT_rich Low_complexity Low_complexity 1 70 0 2 772 345 262 74 18 chr3 24520408 24520571 -135079212 + Lx9 LINE L1 5940 6111 -1533 2 772 2037 264 53 30 chr3 24520634 24521260 -135078523 + Lx9 LINE L1 6383 7022 -622 2 772 180 0 0 0 chr3 24521261 24521281 -135078502 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 2 772 419 320 45 0 chr3 24521327 24521527 -135078256 + Lx9 LINE L1 7304 7512 -132 2 772 666 223 23 11 chr3 24521510 24521687 -135078096 + Lx9 LINE L1 7458 7636 -8 2 772 35777 41 3 20 chr3 24521694 24526802 -135072981 + L1Md_A LINE L1 569 5586 -297 2 772 8216 42 0 0 chr3 24526803 24527787 -135071996 + L1Md_A LINE L1 5588 6571 -11 2 772 220 196 0 0 chr3 24529445 24529491 -135070292 + (CAAA)n Simple_repeat Simple_repeat 3 48 0 2 772 279 0 0 0 chr3 24529658 24529689 -135070094 + (CAGA)n Simple_repeat Simple_repeat 4 34 0 3 772 314 341 40 17 chr3 24531890 24532066 -135067717 + B3A SINE B2 1 180 -18 3 772 24 32 0 0 chr3 24532084 24532115 -135067668 + AT_rich Low_complexity Low_complexity 1 31 0 3 772 205 180 16 32 chr3 24532319 24532382 -135067401 + T-rich Low_complexity Low_complexity 1 62 0 3 772 1720 247 83 8 chr3 24532461 24532943 -135066840 - Lx9 LINE L1 -6 7638 7121 3 772 258 237 59 8 chr3 24532994 24533113 -135066670 + (TTATA)n Simple_repeat Simple_repeat 5 129 0 3 772 491 330 153 22 chr3 24533497 24533903 -135065880 + MER44B DNA MER2_type 78 536 -14 3 772 350 326 50 35 chr3 24534535 24534735 -135065048 - MamSINE1 SINE tRNA -85 205 3 3 772 23 0 0 0 chr3 24536548 24536571 -135063212 + AT_rich Low_complexity Low_complexity 1 23 0 3 772 1080 123 38 22 chr3 24537657 24537840 -135061943 + B2_Mm2 SINE B2 2 187 -8 3 772 342 0 0 0 chr3 24539295 24539333 -135060450 + (TG)n Simple_repeat Simple_repeat 2 39 0 4 772 23 33 0 0 chr3 24540671 24540701 -135059082 + AT_rich Low_complexity Low_complexity 1 30 0 4 772 845 117 0 0 chr3 24541181 24541301 -135058482 - Lx2 LINE L1 -639 6358 6239 4 772 2341 183 166 6 chr3 24541299 24541817 -135057966 + Lx LINE L1 6048 6648 -6 4 772 276 385 48 27 chr3 24542403 24542550 -135057233 - MLT1B LTR MaLR -2 388 239 4 772 675 329 69 60 chr3 24543347 24543799 -135055984 - Lx8 LINE L1 -7 7466 7011 4 772 1223 102 0 0 chr3 24543999 24544175 -135055608 - L1_Mus1 LINE L1 -2 6565 6390 4 772 22 0 0 0 chr3 24544770 24544792 -135054991 + AT_rich Low_complexity Low_complexity 1 22 0 4 772 449 283 0 4 chr3 24545254 24545367 -135054416 + B3 SINE B2 2 111 -84 4 772 632 111 0 11 chr3 24545367 24545458 -135054325 - L1_Mur2 LINE L1 -1121 4756 4667 4 772 6161 168 14 5 chr3 24545448 24546626 -135053157 + L1_Mur2 LINE L1 3460 4648 -1229 4 772 3786 103 18 12 chr3 24547411 24547981 -135051802 + L1_Mus3 LINE L1 6059 6631 -7 5 772 516 16 0 0 chr3 24549086 24549147 -135050636 + (TTTC)n Simple_repeat Simple_repeat 2 62 0 5 772 4814 57 7 3 chr3 24549417 24550032 -135049751 - L1Md_F2 LINE L1 -2 6580 5964 5 772 724 74 14 147 chr3 24551253 24551396 -135048387 - L1_Mus1 LINE L1 -493 6073 5950 5 772 3652 73 2 0 chr3 24551396 24551876 -135047907 + L1_Mus1 LINE L1 6085 6565 -2 5 772 390 42 0 0 chr3 24553208 24553256 -135046527 + (CA)n Simple_repeat Simple_repeat 1 48 0 5 772 8295 48 17 54 chr3 24553455 24553582 -135046201 + L1Md_A LINE L1 205 333 -6391 5 772 3325 61 0 2 chr3 24553582 24554011 -135045772 + L1Md_F2 LINE L1 6155 6582 0 5 772 34300 15 1 4 chr3 24554011 24559310 -135040473 + L1Md_A LINE L1 334 5586 -297 5 772 8642 19 1 0 chr3 24559311 24560303 -135039480 + L1Md_A LINE L1 5588 6580 -2 5 772 340 314 137 0 chr3 24560976 24561100 -135038683 + B3A SINE B2 3 143 -55 5 772 1166 73 0 0 chr3 24561222 24561373 -135038410 + B2_Mm2 SINE B2 2 152 -43 5 772 405 58 0 0 chr3 24561414 24561466 -135038317 + (CATA)n Simple_repeat Simple_repeat 1 52 0 5 772 1977 174 50 8 chr3 24563187 24563564 -135036219 - Lx4A LINE L1 -576 6482 6090 6 772 2038 54 0 4 chr3 24563727 24563987 -135035796 - L1Md_F3 LINE L1 -1 6583 6325 6 772 297 0 0 0 chr3 24564152 24564185 -135035598 + (TA)n Simple_repeat Simple_repeat 2 34 0 6 772 25 51 0 0 chr3 24565137 24565176 -135034607 + AT_rich Low_complexity Low_complexity 1 39 0 6 772 22 0 0 0 chr3 24565334 24565356 -135034427 + AT_rich Low_complexity Low_complexity 1 22 0 6 772 1052 207 88 0 chr3 24565656 24565873 -135033910 + Lx2A1 LINE L1 6767 7002 -6 6 772 21 0 0 0 chr3 24566844 24566865 -135032918 + AT_rich Low_complexity Low_complexity 1 21 0 6 772 960 274 5 0 chr3 24566901 24567116 -135032667 - B3 SINE B2 0 216 1 6 772 473 314 189 39 chr3 24567129 24567622 -135032161 - Charlie13a DNA Charlie -862 652 86 6 772 306 384 8 8 chr3 24567705 24567839 -135031944 - MER5A DNA MER1_type -55 134 1 6 772 336 282 0 0 chr3 24568901 24568986 -135030797 + MTEa LTR MaLR 1 85 -294 7 772 1144 84 5 96 chr3 24569040 24569238 -135030545 - L1_Mus2 LINE L1 0 6566 6387 7 772 878 244 113 42 chr3 24569238 24569521 -135030262 + MTEa LTR MaLR 75 377 -2 7 772 224 59 0 29 chr3 24569769 24569804 -135029979 + (GGA)n Simple_repeat Simple_repeat 3 36 0 7 772 352 342 144 0 chr3 24569989 24570176 -135029607 + ID_B1 SINE B4 5 218 -6 7 772 4484 86 7 11 chr3 24570518 24571131 -135028652 + L1Md_F2 LINE L1 5961 6570 -12 7 772 493 275 129 40 chr3 24571675 24572024 -135027759 - L1MA7 LINE L1 -2 6289 5910 7 772 284 273 38 38 chr3 24572824 24572904 -135026879 + PB1D7 SINE Alu 39 118 -2 7 772 507 361 50 13 chr3 24573077 24573345 -135026438 - MLT1E1 LTR MaLR -8 672 396 7 772 284 307 95 38 chr3 24573415 24573625 -135026158 - Ricksha DNA MuDR -8 3238 3017 7 772 189 180 0 0 chr3 24573718 24573768 -135026015 + T-rich Low_complexity Low_complexity 1 50 0 7 772 5168 60 1 1 chr3 24573771 24574421 -135025362 - L1Md_F2 LINE L1 -4 6578 5929 8 772 581 296 0 29 chr3 24574452 24574591 -135025192 - B1_Mur1 SINE Alu -9 140 6 8 772 186 133 0 0 chr3 24574619 24574649 -135025134 + (GGAA)n Simple_repeat Simple_repeat 2 31 0 8 772 294 234 0 0 chr3 24574666 24574730 -135025053 + Ricksha_0 DNA MuDR 1306 1369 -364 8 772 512 309 63 17 chr3 24574882 24575092 -135024691 - Ricksha DNA MuDR -610 2636 2416 7 772 2304 32 14 3 chr3 24575092 24575374 -135024409 + L1Md_F3 LINE L1 6298 6582 -2 8 772 512 309 63 17 chr3 24575374 24575450 -135024333 - Ricksha DNA MuDR -831 2415 2337 7 772 437 227 85 64 chr3 24575958 24576146 -135023637 - B3A SINE B2 -6 192 1 8 772 486 33 0 0 chr3 24576375 24576435 -135023348 + (TG)n Simple_repeat Simple_repeat 1 60 0 8 772 522 0 0 0 chr3 24576435 24576492 -135023291 + (GA)n Simple_repeat Simple_repeat 1 58 0 8 772 1043 97 7 0 chr3 24577874 24578018 -135021765 - B1_Mus1 SINE Alu -2 146 2 8 772 842 158 8 0 chr3 24578170 24578318 -135021465 + Lx4A LINE L1 5508 5660 -2036 8 772 7186 160 11 10 chr3 24578476 24579696 -135020087 + Lx4A LINE L1 5620 6841 -217 8 772 1888 89 28 7 chr3 24579706 24579978 -135019805 + L1Md_F2 LINE L1 6282 6559 -23 9 772 405 0 0 0 chr3 24579978 24580023 -135019760 + (TAA)n Simple_repeat Simple_repeat 1 45 0 9 772 309 266 59 50 chr3 24581384 24581499 -135018284 + MTEa LTR MaLR 18 133 -246 9 772 1365 224 114 0 chr3 24581499 24581548 -135018235 - ORR1C2 LTR MaLR 0 384 334 9 772 2784 179 59 8 chr3 24581548 24582076 -135017707 + Lx LINE L1 6099 6653 -1 9 772 1365 224 114 0 chr3 24582076 24582369 -135017414 - ORR1C2 LTR MaLR -51 333 5 9 772 33 25 0 0 chr3 24582511 24582551 -135017232 + AT_rich Low_complexity Low_complexity 1 40 0 9 772 3418 25 2 0 chr3 24585101 24585496 -135014287 - MTA_Mm LTR MaLR 0 396 1 9 772 813 71 8 16 chr3 24585735 24585863 -135013920 + (GAAA)n Simple_repeat Simple_repeat 1 127 0 9 772 393 22 0 0 chr3 24585863 24585909 -135013874 + (GGGA)n Simple_repeat Simple_repeat 1 46 0 9 772 23 33 0 0 chr3 24586423 24586453 -135013330 + AT_rich Low_complexity Low_complexity 1 30 0 9 772 321 47 0 0 chr3 24587690 24587733 -135012050 + (TA)n Simple_repeat Simple_repeat 2 44 0 1 772 1034 68 62 0 chr3 24587835 24587981 -135011802 + L1_Mus2 LINE L1 6412 6566 0 1 772 203 406 0 0 chr3 24588424 24588493 -135011290 - L2 LINE L2 -672 2747 2679 1 772 371 317 24 30 chr3 24588503 24588672 -135011111 + L2 LINE L2 1298 1465 -1954 1 772 228 244 191 34 chr3 24589202 24589291 -135010492 + MLT1F LTR MaLR 189 291 -257 1 772 1093 299 134 75 chr3 24590196 24590746 -135009037 - RMER1C Other Other -307 1035 453 1 772 183 80 0 0 chr3 24591341 24591366 -135008417 + (T)n Simple_repeat Simple_repeat 1 25 0 1 772 820 286 74 78 chr3 24591606 24592106 -135007677 + RLTR12B LTR ERVK 1 498 -30 1 772 531 227 53 32 chr3 24592839 24593026 -135006757 + Lx7 LINE L1 7506 7696 0 1 772 297 369 20 47 chr3 24593686 24593834 -135005949 + RSINE1 SINE B4 22 165 0 1 772 21 0 0 0 chr3 24596031 24596052 -135003731 + AT_rich Low_complexity Low_complexity 1 21 0 1 772 30 45 0 0 chr3 24596500 24596544 -135003239 + AT_rich Low_complexity Low_complexity 1 44 0 1 772 3570 286 101 47 chr3 24597533 24599963 -134999820 + Lx8 LINE L1 3383 5976 -1668 1 772 348 24 0 0 chr3 24600159 24600200 -134999583 + (TA)n Simple_repeat Simple_repeat 1 41 0 1 772 292 43 43 0 chr3 24600277 24600323 -134999460 + (CAAA)n Simple_repeat Simple_repeat 3 50 0 1 772 559 281 82 58 chr3 24600404 24600835 -134998948 - MT2B LTR ERVL 0 493 13 1 772 1319 360 49 29 chr3 24600846 24601656 -134998127 + Lx8 LINE L1 6343 7175 -298 1 772 2149 161 40 0 chr3 24601656 24602035 -134997748 + ORR1B1 LTR MaLR 1 394 0 1 772 1319 351 68 45 chr3 24602035 24602178 -134997605 + Lx8 LINE L1 7176 7457 -187 1 772 525 92 0 0 chr3 24602178 24602254 -134997529 + (TA)n Simple_repeat Simple_repeat 1 76 0 1 772 3147 9 0 0 chr3 24602864 24603210 -134996573 - ORR1A0 LTR MaLR 0 346 1 1 772 744 114 0 0 chr3 24603405 24603545 -134996238 + (TC)n Simple_repeat Simple_repeat 1 140 0 1 772 546 16 0 0 chr3 24603545 24603608 -134996175 + (TG)n Simple_repeat Simple_repeat 2 64 0 1 772 410 290 21 0 chr3 24603613 24603706 -134996077 - RSINE1 SINE B4 -35 130 36 1 772 208 307 39 85 chr3 24604635 24604788 -134994995 + MIRc SINE MIR 79 224 -38 1 772 184 211 0 0 chr3 24605508 24605546 -134994237 - L2a LINE L2 0 3426 3389 1 772 688 260 140 84 chr3 24606227 24606655 -134993128 - RMER13A LTR ERVK -408 452 1 1 772 198 0 0 0 chr3 24606718 24606740 -134993043 + (TTA)n Simple_repeat Simple_repeat 2 23 0 1 772 225 0 0 0 chr3 24607029 24607054 -134992729 + (A)n Simple_repeat Simple_repeat 1 25 0 1 772 420 320 132 66 chr3 24607762 24608080 -134991703 + MLT1A0 LTR MaLR 14 352 -13 1 772 194 62 31 0 chr3 24608249 24608281 -134991502 + (CAA)n Simple_repeat Simple_repeat 1 33 0 1 772 198 0 0 0 chr3 24608337 24608359 -134991424 + (TTA)n Simple_repeat Simple_repeat 2 23 0 1 772 1259 136 14 14 chr3 24608359 24608576 -134991207 - Lx3A LINE L1 -12 6969 6753 1 772 1411 253 220 14 chr3 24608596 24609014 -134990769 + RMER5 LTR ERV1 15 518 -16 1 772 5965 208 48 8 chr3 24609043 24610319 -134989464 + Lx2B LINE L1 5664 6990 -10 1 772 22 0 0 0 chr3 24610543 24610565 -134989218 + AT_rich Low_complexity Low_complexity 1 22 0 1 772 333 0 0 0 chr3 24610805 24610842 -134988941 + (TA)n Simple_repeat Simple_repeat 2 38 0 1 772 420 20 0 0 chr3 24610842 24610890 -134988893 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 772 391 300 65 84 chr3 24611945 24612099 -134987684 - B3A SINE B2 -9 186 36 1 772 518 330 36 5 chr3 24612168 24612360 -134987423 - B3 SINE B2 -10 206 9 1 772 242 0 0 57 chr3 24613327 24613362 -134986421 + (CAAAA)n Simple_repeat Simple_repeat 1 33 0 1 772 561 55 0 0 chr3 24614173 24614246 -134985537 + (TG)n Simple_repeat Simple_repeat 1 73 0 1 772 491 290 62 82 chr3 24614310 24614554 -134985229 - B4A SINE B4 -46 246 8 1 772 232 137 0 19 chr3 24614817 24614869 -134984914 + L1Md_T LINE L1 6525 6575 -7 1 772 3998 40 0 0 chr3 24615301 24615779 -134984004 - L1Md_T LINE L1 0 6582 6105 1 772 421 286 0 113 chr3 24615780 24615922 -134983861 + B4 SINE B4 167 292 0 1 772 884 85 15 0 chr3 24616550 24616680 -134983103 + (GAAAA)n Simple_repeat Simple_repeat 4 135 0 1 772 373 375 60 22 chr3 24617116 24617348 -134982435 + Lx8 LINE L1 7117 7357 -116 1 772 699 212 7 0 chr3 24617464 24617615 -134982168 - Lx6 LINE L1 -5 7455 7304 1 772 942 248 38 5 chr3 24617648 24617859 -134981924 + 7SK RNA RNA 15 232 -99 1 772 324 64 0 0 chr3 24617950 24617997 -134981786 + (TG)n Simple_repeat Simple_repeat 1 47 0 1 772 21 36 0 0 chr3 24618647 24618675 -134981108 + AT_rich Low_complexity Low_complexity 1 28 0 1 772 22 0 0 0 chr3 24619032 24619054 -134980729 + AT_rich Low_complexity Low_complexity 1 22 0 1 772 24 67 0 0 chr3 24619689 24619734 -134980049 + AT_rich Low_complexity Low_complexity 1 45 0 1 772 324 328 79 68 chr3 24619795 24619985 -134979798 + B3A SINE B2 1 192 -6 1 772 288 0 0 0 chr3 24620295 24620327 -134979456 + (TAAA)n Simple_repeat Simple_repeat 1 32 0 1 772 180 0 0 0 chr3 24621180 24621200 -134978583 + (TTTTG)n Simple_repeat Simple_repeat 3 22 0 1 772 228 204 204 0 chr3 24621201 24621250 -134978533 - PB1D9 SINE Alu -10 110 52 1 772 425 326 14 47 chr3 24621484 24621632 -134978151 + RSINE1 SINE B4 2 144 -21 1 772 315 71 0 0 chr3 24621670 24621712 -134978071 + (TAA)n Simple_repeat Simple_repeat 3 44 0 1 772 802 282 106 49 chr3 24621742 24622148 -134977635 + RMER1A Other Other 16 506 -560 1 772 3362 231 121 29 chr3 24622159 24622974 -134976809 + RMER1A Other Other 1 879 -151 1 772 342 45 0 0 chr3 24622974 24623018 -134976765 + (TGG)n Simple_repeat Simple_repeat 1 44 0 1 772 3362 231 121 29 chr3 24623018 24623140 -134976643 + RMER1A Other Other 880 1024 -6 1 772 190 266 88 29 chr3 24623215 24623344 -134976439 - MIRc SINE MIR -48 214 79 1 772 1668 44 0 0 chr3 24624272 24624478 -134975305 + ORR1A1 LTR MaLR 141 346 0 1 772 12860 64 31 3 chr3 24624478 24626221 -134973562 + ORR1A1-int LTR MaLR 1 1792 0 1 772 2259 39 18 0 chr3 24626221 24626507 -134973276 + ORR1A1 LTR MaLR 1 291 -55 1 772 639 322 41 41 chr3 24627203 24627446 -134972337 + B4 SINE B4 48 290 -2 1 772 49 103 0 0 chr3 24627871 24628046 -134971737 + AT_rich Low_complexity Low_complexity 1 175 0 1 772 282 326 57 57 chr3 24628965 24629105 -134970678 + Tigger7 DNA MER2_type 271 410 -2081 1 772 26 64 0 0 chr3 24629475 24629522 -134970261 + AT_rich Low_complexity Low_complexity 1 47 0 1 772 860 286 36 52 chr3 24629715 24630099 -134969684 + MTEb LTR MaLR 2 379 0 1 772 457 294 130 100 chr3 24630147 24630854 -134968929 - RMER13A LTR ERVK -103 757 30 1 772 250 362 107 30 chr3 24630911 24631079 -134968704 + MLT1H LTR MaLR 13 193 -356 1 772 26 64 0 0 chr3 24631925 24631972 -134967811 + AT_rich Low_complexity Low_complexity 1 47 0 1 772 445 345 57 17 chr3 24632009 24632186 -134967597 - B3A SINE B2 -10 188 5 1 772 264 246 33 0 chr3 24633249 24633310 -134966473 + CT-rich Low_complexity Low_complexity 2 64 0 1 772 293 147 0 26 chr3 24633416 24633493 -134966290 + (TCTG)n Simple_repeat Simple_repeat 4 78 0 1 772 1063 234 150 51 chr3 24633885 24634218 -134965565 + ORR1D1 LTR MaLR 9 374 0 1 772 6852 171 95 39 chr3 24635419 24636457 -134963326 + RLTR21 LTR ERVK 1 1126 -446 1 772 477 50 0 0 chr3 24636457 24636517 -134963266 + (TG)n Simple_repeat Simple_repeat 1 60 0 1 772 6852 171 95 39 chr3 24636517 24636562 -134963221 + RLTR21 LTR ERVK 1127 1169 -403 1 772 417 110 0 0 chr3 24636562 24636635 -134963148 + (TATG)n Simple_repeat Simple_repeat 2 74 0 1 772 6852 171 95 39 chr3 24636635 24637039 -134962744 + RLTR21 LTR ERVK 1170 1571 -1 1 772 221 404 9 9 chr3 24637113 24637218 -134962565 - PB1D10 SINE Alu -8 109 5 1 772 24 32 0 0 chr3 24637223 24637254 -134962529 + AT_rich Low_complexity Low_complexity 1 31 0 1 772 25 51 0 0 chr3 24637305 24637344 -134962439 + AT_rich Low_complexity Low_complexity 1 39 0 1 772 429 297 9 18 chr3 24638246 24638359 -134961424 + B1F1 SINE Alu 17 128 -21 1 772 22 0 0 0 chr3 24640119 24640141 -134959642 + AT_rich Low_complexity Low_complexity 1 22 0 1 772 1781 163 10 3 chr3 24640458 24640760 -134959023 + MT2B LTR ERVL 298 601 0 1 772 22 70 0 0 chr3 24640771 24640814 -134958969 + AT_rich Low_complexity Low_complexity 1 43 0 1 773 276 390 12 78 chr3 24643678 24643765 -134956018 + RSINE1 SINE B4 4 90 -75 1 773 3541 32 0 14 chr3 24643765 24644206 -134955577 + L1Md_F2 LINE L1 6148 6582 0 1 773 276 390 12 78 chr3 24644206 24644285 -134955498 + RSINE1 SINE B4 91 159 -6 1 773 198 71 0 0 chr3 24644329 24644357 -134955426 + (TG)n Simple_repeat Simple_repeat 1 28 0 1 773 478 140 98 45 chr3 24644476 24644588 -134955195 + Lx2 LINE L1 6880 6997 0 1 773 21 71 0 0 chr3 24644950 24644992 -134954791 + AT_rich Low_complexity Low_complexity 1 42 0 1 773 1901 163 6 0 chr3 24645186 24645511 -134954272 - ORR1A2 LTR MaLR 0 327 1 1 773 314 311 0 0 chr3 24646093 24646167 -134953616 - RSINE1 SINE B4 -17 148 75 1 773 1382 262 78 10 chr3 24647988 24648373 -134951410 + MTD LTR MaLR 1 411 -8 1 773 4222 78 14 7 chr3 24648767 24649346 -134950437 + L1Md_F2 LINE L1 5988 6570 -12 1 773 991 126 23 0 chr3 24651427 24651602 -134948181 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 1 773 203 0 37 0 chr3 24651837 24651864 -134947919 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 1 773 387 41 0 0 chr3 24652165 24652214 -134947569 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 773 387 0 0 0 chr3 24653875 24653918 -134945865 + (TA)n Simple_repeat Simple_repeat 1 43 0 1 773 478 280 22 61 chr3 24654010 24654238 -134945545 + Lx7 LINE L1 7144 7362 -334 1 773 266 307 61 47 chr3 24654212 24654424 -134945359 + Lx7 LINE L1 7482 7696 0 1 773 210 128 0 0 chr3 24654470 24654509 -134945274 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 773 379 351 40 50 chr3 24654511 24654814 -134944969 + MLT1C LTR MaLR 168 467 0 2 773 27 49 0 0 chr3 24655911 24655952 -134943831 + AT_rich Low_complexity Low_complexity 1 41 0 2 773 22 0 0 0 chr3 24656588 24656610 -134943173 + AT_rich Low_complexity Low_complexity 1 22 0 2 773 889 315 18 25 chr3 24657689 24657972 -134941811 - B4 SINE B4 -4 288 8 2 773 15709 144 87 75 chr3 24658417 24659880 -134939903 + Lx4A LINE L1 583 2049 -3828 2 773 234 0 0 0 chr3 24659880 24659906 -134939877 + (CA)n Simple_repeat Simple_repeat 1 26 0 2 773 531 0 0 0 chr3 24659906 24659964 -134939819 + (GA)n Simple_repeat Simple_repeat 2 60 0 2 773 15709 150 55 109 chr3 24659964 24662538 -134937245 + Lx4A LINE L1 2050 4642 -1238 2 773 2659 124 2 17 chr3 24662538 24662947 -134936836 - MTB_Mm LTR MaLR -4 403 1 2 773 15709 150 55 109 chr3 24662947 24663539 -134936244 + Lx4A LINE L1 4643 5240 -640 2 773 507 33 0 0 chr3 24663539 24663600 -134936183 + (TA)n Simple_repeat Simple_repeat 2 62 0 2 773 13039 187 65 50 chr3 24663600 24665090 -134934693 + Lx4A LINE L1 5241 6792 -266 2 773 351 0 0 0 chr3 24666852 24666891 -134932892 + (CA)n Simple_repeat Simple_repeat 2 40 0 2 773 311 315 33 11 chr3 24667126 24667216 -134932567 + PB1D10 SINE Alu 17 108 -9 2 773 226 388 12 0 chr3 24667934 24668014 -134931769 - ID4_ SINE ID -1 82 2 2 773 335 235 153 40 chr3 24668029 24668153 -134931630 - B1F1 SINE Alu -8 141 4 2 773 25 31 0 0 chr3 24669411 24669443 -134930340 + AT_rich Low_complexity Low_complexity 1 32 0 2 773 21 36 0 0 chr3 24672806 24672834 -134926949 + AT_rich Low_complexity Low_complexity 1 28 0 2 773 21 0 0 0 chr3 24675003 24675024 -134924759 + AT_rich Low_complexity Low_complexity 1 21 0 2 773 255 262 0 0 chr3 24675259 24675339 -134924444 + (CATA)n Simple_repeat Simple_repeat 1 80 0 2 773 216 0 0 0 chr3 24675341 24675365 -134924418 + (TATG)n Simple_repeat Simple_repeat 1 24 0 2 773 24 53 0 0 chr3 24676548 24676586 -134923197 + AT_rich Low_complexity Low_complexity 1 38 0 2 773 271 105 17 17 chr3 24679255 24679313 -134920470 + (TA)n Simple_repeat Simple_repeat 2 59 0 2 773 240 290 21 11 chr3 24679345 24679439 -134920344 - MLT1A1 LTR MaLR -12 396 302 2 773 249 311 147 13 chr3 24679469 24679619 -134920164 - MLT1A1 LTR MaLR -196 212 43 2 773 516 32 0 0 chr3 24679921 24679983 -134919800 + (TTCC)n Simple_repeat Simple_repeat 3 64 0 2 773 848 174 8 4 chr3 24679995 24680249 -134919534 + CT-rich Low_complexity Low_complexity 1 255 0 2 773 614 248 21 0 chr3 24680253 24680394 -134919389 - B1F SINE Alu -5 144 1 2 773 34 42 0 0 chr3 24680422 24680470 -134919313 + AT_rich Low_complexity Low_complexity 1 48 0 2 773 23 0 0 0 chr3 24681401 24681424 -134918359 + AT_rich Low_complexity Low_complexity 1 23 0 2 773 21 0 0 0 chr3 24681746 24681767 -134918016 + AT_rich Low_complexity Low_complexity 1 21 0 2 773 201 121 0 0 chr3 24682742 24682775 -134917008 + (T)n Simple_repeat Simple_repeat 1 33 0 2 773 260 320 0 0 chr3 24682857 24682954 -134916829 + T-rich Low_complexity Low_complexity 1 97 0 2 773 26 0 0 0 chr3 24683014 24683040 -134916743 + AT_rich Low_complexity Low_complexity 1 26 0 2 773 335 303 64 0 chr3 24683061 24683170 -134916613 - PB1D10 SINE Alu -1 116 1 2 773 319 310 38 0 chr3 24683205 24683323 -134916460 + B1_Mur1 SINE Alu 7 128 -21 2 773 353 22 0 21 chr3 24683615 24683662 -134916121 + (TA)n Simple_repeat Simple_repeat 1 46 0 2 773 2596 62 3 0 chr3 24683777 24684102 -134915681 - L1_Mus1 LINE L1 -323 6244 5919 2 773 2463 66 0 12 chr3 24684102 24684425 -134915358 + L1_Mus1 LINE L1 6248 6566 -1 2 773 739 103 0 70 chr3 24684447 24684604 -134915179 + L1_Mus4 LINE L1 6491 6636 0 2 773 546 286 22 6 chr3 24684700 24684879 -134914904 - B3A SINE B2 -16 182 1 2 773 346 373 77 34 chr3 24685524 24685732 -134914051 - B4A SINE B4 -74 218 2 2 773 353 304 0 56 chr3 24686187 24686295 -134913488 + RSINE1 SINE B4 34 135 -30 2 773 387 0 0 0 chr3 24686740 24686783 -134913000 + (CA)n Simple_repeat Simple_repeat 1 43 0 2 773 360 64 0 0 chr3 24688454 24688501 -134911282 + (GAAA)n Simple_repeat Simple_repeat 2 48 0 2 773 21 36 0 0 chr3 24688526 24688554 -134911229 + AT_rich Low_complexity Low_complexity 1 28 0 2 773 26 30 0 0 chr3 24688642 24688675 -134911108 + AT_rich Low_complexity Low_complexity 1 33 0 2 773 210 290 129 0 chr3 24689572 24689634 -134910149 - ID4 SINE ID -11 72 3 2 773 526 301 77 52 chr3 24690403 24691141 -134908642 + L1MA5A LINE L1 5062 5857 -1616 2 773 5033 104 19 4 chr3 24691368 24692111 -134907672 - L1Md_F2 LINE L1 0 6582 5829 2 773 228 154 0 0 chr3 24692222 24692274 -134907509 + T-rich Low_complexity Low_complexity 1 52 0 2 773 499 128 118 9 chr3 24692276 24692386 -134907397 + L1_Mur2 LINE L1 5177 5298 -579 2 773 6590 85 30 10 chr3 24692386 24693301 -134906482 + L1_Mus2 LINE L1 5633 6565 -1 2 773 1267 131 0 0 chr3 24693295 24693493 -134906290 + L1_Mur2 LINE L1 5282 5479 -398 2 773 454 314 102 63 chr3 24693535 24694075 -134905708 - L1MEc LINE L1 -4070 2330 1770 2 773 273 29 0 0 chr3 24694114 24694148 -134905635 + (T)n Simple_repeat Simple_repeat 1 34 0 2 773 2757 78 3 18 chr3 24694158 24694549 -134905234 - L1Md_F2 LINE L1 0 6582 6198 2 773 307 302 87 12 chr3 24694780 24694941 -134904842 - L1MEc LINE L1 -4908 1507 1335 2 773 2482 61 9 3 chr3 24695041 24695371 -134904412 - L1_Mus2 LINE L1 0 6566 6235 2 773 227 298 24 47 chr3 24696103 24696230 -134903553 - L1MEc LINE L1 -6138 262 139 2 773 21 0 0 0 chr3 24696344 24696365 -134903418 + AT_rich Low_complexity Low_complexity 1 21 0 2 773 24 32 0 0 chr3 24696397 24696428 -134903355 + AT_rich Low_complexity Low_complexity 1 31 0 2 773 791 292 199 30 chr3 24696507 24696934 -134902849 - Tigger1 DNA MER2_type -163 2255 1735 2 773 2057 40 0 0 chr3 24696934 24697184 -134902599 - L1Md_A LINE L1 0 6582 6333 2 773 791 292 199 30 chr3 24697184 24697258 -134902525 - Tigger1 DNA MER2_type -684 1734 1670 2 773 277 303 130 33 chr3 24697440 24697492 -134902291 - ID_B1 SINE B4 -41 183 134 2 773 483 18 0 0 chr3 24697492 24697548 -134902235 + (TC)n Simple_repeat Simple_repeat 2 57 0 2 773 277 303 130 33 chr3 24697548 24697587 -134902196 - ID_B1 SINE B4 -91 133 83 2 773 830 338 34 15 chr3 24697709 24697976 -134901807 - B4A SINE B4 -20 272 1 2 773 363 320 63 16 chr3 24697977 24698104 -134901679 - Tigger1 DNA MER2_type -942 1476 1344 2 773 641 334 91 24 chr3 24698127 24698467 -134901316 - Tigger1 DNA MER2_type -1138 1280 918 2 773 841 309 91 21 chr3 24698895 24699315 -134900468 - Tigger1 DNA MER2_type -1507 911 463 2 773 300 351 4 12 chr3 24699318 24699413 -134900370 + PB1D10 SINE Alu 1 97 -52 2 773 495 365 76 7 chr3 24699633 24699909 -134899874 - Tigger1 DNA MER2_type -2109 309 15 2 773 261 57 0 0 chr3 24700047 24700082 -134899701 + (TG)n Simple_repeat Simple_repeat 1 35 0 2 773 459 52 0 0 chr3 24700082 24700139 -134899644 + (GA)n Simple_repeat Simple_repeat 1 58 0 2 773 7706 152 22 8 chr3 24700819 24703160 -134896623 - Lx3C LINE L1 -2 6974 4600 2 773 669 25 0 0 chr3 24703903 24703982 -134895801 + (TCTA)n Simple_repeat Simple_repeat 4 82 0 2 773 529 306 99 111 chr3 24704225 24704740 -134895043 + RLTR11A2 LTR ERVK 10 518 -9 2 773 235 176 14 42 chr3 24704788 24704859 -134894924 + (TA)n Simple_repeat Simple_repeat 1 69 0 2 773 633 231 94 19 chr3 24705447 24705659 -134894124 + Lx2B LINE L1 6760 6987 -13 2 773 642 28 47 0 chr3 24705674 24705781 -134894002 - L1Md_F3 LINE L1 -2 6582 6471 2 773 5898 90 35 31 chr3 24706251 24707141 -134892642 + L1_Mus3 LINE L1 5740 6632 -6 2 773 477 110 0 0 chr3 24707612 24707685 -134892098 + (GGAA)n Simple_repeat Simple_repeat 4 76 0 2 773 1233 285 32 10 chr3 24707741 24708145 -134891638 + Lx9 LINE L1 6312 6724 -920 2 773 393 282 32 16 chr3 24708515 24708641 -134891142 + MLT2B2 LTR ERVL 434 561 -1 2 773 3608 22 57 13 chr3 24709042 24709497 -134890286 + IAPLTR2_Mm LTR ERVK 1 475 0 2 773 22 35 0 0 chr3 24710380 24710409 -134889374 + AT_rich Low_complexity Low_complexity 1 29 0 2 773 577 215 227 0 chr3 24710433 24710596 -134889187 - B3 SINE B2 -16 200 1 2 773 201 156 0 0 chr3 24711841 24711873 -134887910 + CT-rich Low_complexity Low_complexity 2 33 0 2 773 194 372 74 37 chr3 24712591 24712806 -134886977 - MIRb SINE MIR -8 260 38 2 773 36 40 0 0 chr3 24712837 24712887 -134886896 + AT_rich Low_complexity Low_complexity 1 50 0 2 773 234 372 58 7 chr3 24712952 24713090 -134886693 + Lx8 LINE L1 7150 7294 -179 2 773 512 273 133 41 chr3 24713504 24713917 -134885866 - Arthur1 DNA Tip100 -46 3901 3451 2 773 21 36 0 0 chr3 24714456 24714484 -134885299 + AT_rich Low_complexity Low_complexity 1 28 0 2 773 1895 233 30 41 chr3 24714632 24715196 -134884587 - L1_Rod LINE L1 -10 5837 5280 2 773 581 323 91 59 chr3 24715205 24715676 -134884107 + Lx9 LINE L1 6953 7438 -206 2 773 423 68 0 0 chr3 24715697 24715756 -134884027 + (TG)n Simple_repeat Simple_repeat 2 60 0 2 773 23 78 0 0 chr3 24715865 24715916 -134883867 + AT_rich Low_complexity Low_complexity 1 51 0 2 773 449 345 56 14 chr3 24716345 24716489 -134883294 + RSINE1 SINE B4 2 151 -14 2 773 387 0 0 0 chr3 24716495 24716538 -134883245 + (CA)n Simple_repeat Simple_repeat 2 44 0 2 773 240 35 0 0 chr3 24717172 24717201 -134882582 + (TAA)n Simple_repeat Simple_repeat 2 30 0 2 773 281 326 11 11 chr3 24718453 24718546 -134881237 + RSINE1 SINE B4 3 95 -70 2 773 475 175 63 72 chr3 24718554 24718665 -134881118 + Lx7 LINE L1 6644 6753 -943 2 773 432 53 13 39 chr3 24718682 24718760 -134881023 + (TTTTTG)n Simple_repeat Simple_repeat 2 77 0 2 773 1946 213 55 28 chr3 24718760 24719229 -134880554 + Lx7 LINE L1 6760 7241 -455 2 773 300 133 0 0 chr3 24719290 24719350 -134880433 + (TC)n Simple_repeat Simple_repeat 2 61 0 2 773 783 226 111 22 chr3 24719357 24719583 -134880200 - RMER1C Other Other -27 1315 1070 2 773 500 293 151 25 chr3 24719580 24719825 -134879958 + Lx6 LINE L1 7177 7452 -8 2 773 261 311 0 0 chr3 24719868 24719942 -134879841 + Lx7 LINE L1 7276 7349 -347 2 773 491 169 32 0 chr3 24719944 24720068 -134879715 + (TA)n Simple_repeat Simple_repeat 2 129 0 2 773 230 204 0 0 chr3 24720075 24720124 -134879659 + Lx7 LINE L1 7355 7403 -293 2 773 211 342 0 0 chr3 24720465 24720544 -134879239 + (CA)n Simple_repeat Simple_repeat 1 79 0 2 773 2576 197 29 31 chr3 24721348 24721797 -134877986 + RLTR11A2 LTR ERVK 1 452 -75 2 773 746 131 20 7 chr3 24721797 24721943 -134877840 - Lx LINE L1 -3 6651 6504 2 773 2576 197 29 31 chr3 24721943 24722012 -134877771 + RLTR11A2 LTR ERVK 453 518 -9 2 773 334 336 95 54 chr3 24722303 24722451 -134877332 - RSINE1 SINE B4 -4 161 8 2 773 243 0 0 0 chr3 24722477 24722504 -134877279 + (TG)n Simple_repeat Simple_repeat 1 27 0 2 773 1491 180 201 0 chr3 24722993 24723332 -134876451 + L1_Mur1 LINE L1 4139 4545 -1341 3 773 4708 176 2 1 chr3 24723332 24724149 -134875634 + Lx LINE L1 5823 6640 -14 3 773 2512 104 3 6 chr3 24724144 24724503 -134875280 + L1_Mus2 LINE L1 6207 6564 -2 3 773 233 368 0 0 chr3 24724651 24724719 -134875064 - ID2 SINE ID -4 79 12 3 773 189 0 0 0 chr3 24724836 24724857 -134874926 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 3 773 5211 58 1 1 chr3 24726882 24727543 -134872240 + L1_Mus1 LINE L1 5907 6567 0 3 773 6596 135 25 13 chr3 24727702 24728802 -134870981 + Lx2 LINE L1 5884 6997 0 3 773 24 67 0 0 chr3 24729327 24729372 -134870411 + AT_rich Low_complexity Low_complexity 1 45 0 3 773 32 26 0 0 chr3 24729392 24729431 -134870352 + AT_rich Low_complexity Low_complexity 1 39 0 3 773 204 40 0 0 chr3 24729448 24729473 -134870310 + (TC)n Simple_repeat Simple_repeat 2 26 0 3 773 339 25 0 0 chr3 24729473 24729513 -134870270 + (TG)n Simple_repeat Simple_repeat 2 41 0 3 773 549 313 11 27 chr3 24729535 24729719 -134870064 - B3A SINE B2 -15 183 3 3 773 390 21 0 0 chr3 24729898 24729945 -134869838 + (CA)n Simple_repeat Simple_repeat 2 48 0 3 773 23 0 0 0 chr3 24730707 24730730 -134869053 + AT_rich Low_complexity Low_complexity 1 23 0 3 773 402 303 136 5 chr3 24730742 24730941 -134868842 - ORR1D2 LTR MaLR -4 366 142 3 773 227 190 0 23 chr3 24731064 24731107 -134868676 + (CA)n Simple_repeat Simple_repeat 1 42 0 3 773 27 29 0 0 chr3 24731113 24731147 -134868636 + AT_rich Low_complexity Low_complexity 1 34 0 3 773 1914 117 37 0 chr3 24731967 24732265 -134867518 - L1_Mus4 LINE L1 -6 6630 6322 3 773 22 0 0 0 chr3 24732329 24732351 -134867432 + AT_rich Low_complexity Low_complexity 1 22 0 3 773 228 250 0 0 chr3 24732647 24732711 -134867072 + L1_Rod LINE L1 5691 5754 -93 3 773 333 100 0 0 chr3 24732781 24732831 -134866952 + (CA)n Simple_repeat Simple_repeat 1 50 0 3 773 626 335 75 52 chr3 24733343 24733960 -134865823 + Lx9 LINE L1 6976 7606 -38 3 773 21 36 0 0 chr3 24733961 24733989 -134865794 + AT_rich Low_complexity Low_complexity 1 28 0 3 773 577 241 52 22 chr3 24733994 24734130 -134865653 + B1_Mus1 SINE Alu 6 145 -3 3 773 26 0 0 0 chr3 24734140 24734166 -134865617 + AT_rich Low_complexity Low_complexity 1 26 0 3 773 333 0 0 0 chr3 24734518 24734555 -134865228 + (TTTA)n Simple_repeat Simple_repeat 1 37 0 3 773 394 382 0 0 chr3 24734918 24735049 -134864734 - RSINE1 SINE B4 -33 132 2 3 773 258 310 35 0 chr3 24736051 24736138 -134863645 - MLT1A0 LTR MaLR -274 91 2 3 773 24 32 0 0 chr3 24736528 24736559 -134863224 + AT_rich Low_complexity Low_complexity 1 31 0 3 773 21 57 0 0 chr3 24738897 24738932 -134860851 + AT_rich Low_complexity Low_complexity 1 35 0 3 773 1067 257 65 49 chr3 24739005 24739373 -134860410 - ORR1D1 LTR MaLR 0 374 1 3 773 254 185 31 0 chr3 24739463 24739528 -134860255 + (TATG)n Simple_repeat Simple_repeat 2 68 0 3 773 206 262 12 12 chr3 24739546 24739627 -134860156 + (TA)n Simple_repeat Simple_repeat 1 81 0 3 773 276 154 0 0 chr3 24739629 24739681 -134860102 + (CA)n Simple_repeat Simple_repeat 2 53 0 3 773 1783 265 19 102 chr3 24739882 24740420 -134859363 - RLTR18B LTR ERVK -5 507 15 3 773 740 333 18 21 chr3 24740910 24741192 -134858591 + B4A SINE B4 2 282 -10 3 773 366 322 194 5 chr3 24742069 24742275 -134857508 - B4A SINE B4 -6 286 42 3 773 188 111 28 0 chr3 24742973 24743009 -134856774 + (TAAA)n Simple_repeat Simple_repeat 3 39 0 3 773 545 399 14 5 chr3 24743852 24744066 -134855717 + ID_B1 SINE B4 1 216 -8 3 773 289 230 126 0 chr3 24744710 24744797 -134854986 + RSINE1 SINE B4 5 102 -63 3 773 888 236 45 0 chr3 24745040 24745239 -134854544 + B3 SINE B2 1 208 -8 3 773 414 67 27 62 chr3 24745486 24745598 -134854185 + A-rich Low_complexity Low_complexity 2 109 0 3 773 258 250 127 42 chr3 24745641 24745712 -134854071 + ID4_ SINE ID 5 81 -2 3 773 234 208 0 117 chr3 24745659 24745719 -134854064 + ID SINE ID 33 85 -139 3 773 648 236 21 0 chr3 24746029 24746173 -134853610 + B1_Mur4 SINE Alu 3 149 -1 3 773 378 0 0 0 chr3 24746312 24746354 -134853429 + (TG)n Simple_repeat Simple_repeat 1 42 0 3 773 2122 204 30 2 chr3 24749030 24749427 -134850356 + MTC LTR MaLR 14 421 0 3 773 565 305 31 41 chr3 24749905 24750100 -134849683 - B3A SINE B2 -5 193 1 3 773 182 293 164 41 chr3 24750987 24751133 -134848650 - L2a LINE L2 -10 3416 3253 3 773 563 244 55 89 chr3 24751571 24751828 -134847955 + L1MB8 LINE L1 5798 6045 -133 3 773 1139 221 115 107 chr3 24751840 24752128 -134847655 + ORR1C1 LTR MaLR 11 332 -46 3 773 784 204 0 0 chr3 24752128 24752270 -134847513 + B1_Mur4 SINE Alu 2 143 -7 3 773 1139 221 115 107 chr3 24752270 24752346 -134847437 + ORR1C1 LTR MaLR 333 378 0 3 773 590 39 0 13 chr3 24754319 24754397 -134845386 + (TAAA)n Simple_repeat Simple_repeat 3 79 0 3 773 294 29 0 0 chr3 24756205 24756240 -134843543 + (CA)n Simple_repeat Simple_repeat 1 35 0 3 773 299 145 0 73 chr3 24756449 24756531 -134843252 - L1Md_F2 LINE L1 0 6584 6509 3 773 1836 64 0 8 chr3 24756533 24756768 -134843015 + L1Md_F2 LINE L1 6176 6408 -174 3 773 21 36 0 0 chr3 24758630 24758658 -134841125 + AT_rich Low_complexity Low_complexity 1 28 0 3 773 11341 140 42 13 chr3 24758872 24761996 -134837787 + Lx4A LINE L1 3837 7053 -5 3 773 3339 33 0 0 chr3 24762019 24762414 -134837369 - L1Md_F2 LINE L1 -593 5989 5595 3 773 4794 48 7 5 chr3 24762414 24763022 -134836761 + L1Md_F2 LINE L1 5972 6580 -2 3 773 463 313 23 107 chr3 24763031 24763419 -134836364 + MTD LTR MaLR 68 404 -17 3 773 198 369 81 0 chr3 24764254 24764365 -134835418 + L2a LINE L2 3303 3422 -4 3 773 282 336 0 0 chr3 24765989 24766093 -134833690 + PB1D10 SINE Alu 1 104 -13 3 773 465 50 0 0 chr3 24766187 24766247 -134833536 + (GA)n Simple_repeat Simple_repeat 1 60 0 3 773 744 163 0 0 chr3 24769452 24769575 -134830208 + Lx3C LINE L1 4944 5066 -820 3 773 5885 209 19 20 chr3 24769576 24770848 -134828935 + Lx3C LINE L1 5701 6970 -6 3 773 239 184 0 0 chr3 24772174 24772212 -134827571 - Lx9 LINE L1 -1007 6637 6600 3 96 1209 301 38 20 chr3 24772216 24772667 -134827116 - Lx9 LINE L1 -1599 6045 5587 3 774 23885 62 19 0 chr3 24772688 24776423 -134823360 + L1Md_F2 LINE L1 2779 6562 -20 3 774 288 91 0 0 chr3 24777615 24777659 -134822124 + (TCC)n Simple_repeat Simple_repeat 2 45 0 3 774 456 316 62 98 chr3 24778497 24779128 -134820655 - RLTR18 LTR ERVK -4 612 5 3 774 1006 271 41 37 chr3 24779299 24779594 -134820189 + ORR1D2 LTR MaLR 75 370 0 3 774 459 0 0 0 chr3 24779840 24779891 -134819892 + (TC)n Simple_repeat Simple_repeat 2 52 0 3 774 582 82 0 0 chr3 24779891 24779975 -134819808 + (TG)n Simple_repeat Simple_repeat 2 86 0 3 774 248 137 20 0 chr3 24782373 24782424 -134817359 + (TG)n Simple_repeat Simple_repeat 2 53 0 3 774 432 0 0 0 chr3 24782940 24782988 -134816795 + (TG)n Simple_repeat Simple_repeat 2 49 0 3 774 26 30 0 0 chr3 24783055 24783088 -134816695 + AT_rich Low_complexity Low_complexity 1 33 0 3 774 430 319 22 16 chr3 24783127 24783312 -134816471 + L1_Rod LINE L1 68 253 -6919 3 774 505 306 25 35 chr3 24783306 24783509 -134816274 + L1_Rod LINE L1 17 217 -6955 3 774 1684 192 35 13 chr3 24783514 24783825 -134815958 + RLTR41 LTR ERV1 129 446 0 3 774 428 274 95 7 chr3 24783825 24783946 -134815837 - RLTR18B LTR ERVK -330 182 49 3 774 3357 271 115 42 chr3 24783946 24785015 -134814768 + L1_Rod LINE L1 2612 3709 -2138 3 774 210 0 16 139 chr3 24785015 24785137 -134814646 + (CTAAA)n Simple_repeat Simple_repeat 3 109 0 3 774 3357 271 115 42 chr3 24785137 24786209 -134813574 + L1_Rod LINE L1 3710 4915 -932 3 774 221 57 0 28 chr3 24786209 24786245 -134813538 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 3 774 3357 271 115 42 chr3 24786245 24786278 -134813505 + L1_Rod LINE L1 4916 4946 -901 3 774 428 248 37 22 chr3 24786303 24786439 -134813344 + L1_Rod LINE L1 5037 5174 -673 3 774 428 91 30 0 chr3 24786451 24786517 -134813266 + B2_Mm2 SINE B2 1 68 -127 3 774 230 282 23 12 chr3 24786517 24786537 -134813246 + B4A SINE B4 1 87 -205 3 774 765 170 57 38 chr3 24786537 24786696 -134813087 + L1_Rod LINE L1 5462 5623 -224 3 774 1046 293 67 33 chr3 24787058 24788214 -134811569 + RMER1A Other Other 3 517 -549 3 774 236 111 0 22 chr3 24788214 24788260 -134811523 + (CA)n Simple_repeat Simple_repeat 2 46 0 3 774 21 57 0 0 chr3 24790741 24790776 -134809007 + AT_rich Low_complexity Low_complexity 1 35 0 3 774 327 364 0 24 chr3 24791346 24791470 -134808313 + RSINE1 SINE B4 7 127 -38 3 774 477 0 0 0 chr3 24791734 24791787 -134807996 + (TC)n Simple_repeat Simple_repeat 1 53 0 3 774 441 36 0 0 chr3 24792313 24792368 -134807415 + (TAGA)n Simple_repeat Simple_repeat 2 56 0 3 774 355 143 26 13 chr3 24792507 24792585 -134807198 + (CATATA)n Simple_repeat Simple_repeat 3 81 0 3 774 378 0 0 0 chr3 24793725 24793767 -134806016 + (TA)n Simple_repeat Simple_repeat 2 43 0 3 774 3608 155 9 9 chr3 24793767 24794346 -134805437 - Lx2B LINE L1 -365 6635 6057 3 774 691 312 21 32 chr3 24794502 24794830 -134804953 + MTD LTR MaLR 1 417 -2 3 774 2055 25 0 0 chr3 24794930 24795172 -134804611 - L1Md_T LINE L1 -622 5960 5719 3 774 4319 41 0 0 chr3 24795172 24795688 -134804095 + L1Md_T LINE L1 6067 6582 0 3 774 290 299 43 7 chr3 24795762 24795900 -134803883 - L1MA6 LINE L1 -12 6288 6146 3 774 245 0 153 0 chr3 24795900 24795985 -134803798 + (TA)n Simple_repeat Simple_repeat 2 99 0 3 774 627 14 0 0 chr3 24796174 24796246 -134803537 + (TG)n Simple_repeat Simple_repeat 1 72 0 3 774 307 347 15 76 chr3 24796246 24796377 -134803406 - RSINE1 SINE B4 -34 131 9 3 774 366 204 0 0 chr3 24796788 24796886 -134802897 + (TA)n Simple_repeat Simple_repeat 1 98 0 3 774 323 329 54 30 chr3 24796909 24797075 -134802708 - RLTR21 LTR ERVK -319 1253 1084 3 774 41 48 0 0 chr3 24797311 24797373 -134802410 + AT_rich Low_complexity Low_complexity 1 62 0 4 774 21 0 0 0 chr3 24797492 24797513 -134802270 + AT_rich Low_complexity Low_complexity 1 21 0 4 774 357 43 0 0 chr3 24797513 24797560 -134802223 + (TG)n Simple_repeat Simple_repeat 2 48 0 4 774 343 369 81 19 chr3 24798314 24798474 -134801309 + MER5A DNA MER1_type 14 183 -6 4 774 8219 2 0 0 chr3 24798768 24799677 -134800106 + L1Md_A LINE L1 5674 6582 0 4 774 357 207 64 17 chr3 24800180 24800352 -134799431 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 4 774 768 159 0 0 chr3 24800403 24800541 -134799242 + (TGGA)n Simple_repeat Simple_repeat 3 140 0 4 774 1028 308 67 16 chr3 24801824 24802207 -134797576 - MTD LTR MaLR -16 403 17 4 774 201 74 0 0 chr3 24802473 24802500 -134797283 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 4 774 632 260 82 0 chr3 24802663 24802859 -134796924 - Lx9 LINE L1 -1675 5969 5758 4 774 1317 270 46 24 chr3 24802856 24803273 -134796510 + Lx9 LINE L1 6607 7032 -612 4 774 1834 210 49 0 chr3 24803289 24803655 -134796128 - ORR1C2 LTR MaLR 0 384 1 4 774 708 273 69 18 chr3 24803676 24803952 -134795831 + Lx9 LINE L1 7058 7347 -297 4 774 226 169 42 14 chr3 24804096 24804168 -134795615 + (TTATA)n Simple_repeat Simple_repeat 5 78 0 4 774 203 133 66 13 chr3 24804181 24804257 -134795526 + (TTATA)n Simple_repeat Simple_repeat 5 84 0 4 774 34 79 0 0 chr3 24804290 24804366 -134795417 + AT_rich Low_complexity Low_complexity 1 76 0 4 774 27 62 0 0 chr3 24804430 24804478 -134795305 + AT_rich Low_complexity Low_complexity 1 48 0 4 774 1788 305 86 39 chr3 24804523 24805543 -134794240 + Lx9 LINE L1 6557 7624 -20 4 774 310 364 13 19 chr3 24806233 24806390 -134793393 - RSINE1 SINE B4 -8 157 2 4 774 369 136 0 0 chr3 24807641 24807707 -134792076 + (CA)n Simple_repeat Simple_repeat 1 66 0 4 774 270 0 0 0 chr3 24808478 24808508 -134791275 + (A)n Simple_repeat Simple_repeat 1 30 0 4 774 1458 289 71 13 chr3 24808757 24809219 -134790564 + Lx6 LINE L1 6966 7454 -6 4 774 362 261 18 6 chr3 24809228 24809394 -134790389 + GA-rich Low_complexity Low_complexity 2 169 0 4 774 2512 222 105 18 chr3 24809502 24810180 -134789603 - RMER19A LTR ERVK 0 737 1 4 774 26 50 0 0 chr3 24812545 24812585 -134787198 + AT_rich Low_complexity Low_complexity 1 40 0 4 774 840 232 5 25 chr3 24812986 24813189 -134786594 + ORR1B1 LTR MaLR 1 199 -195 4 774 564 15 0 0 chr3 24813274 24813339 -134786444 + (TAGA)n Simple_repeat Simple_repeat 1 65 0 4 774 249 319 11 0 chr3 24813963 24814057 -134785726 + CT-rich Low_complexity Low_complexity 3 97 0 4 774 23 0 0 0 chr3 24814881 24814904 -134784879 + AT_rich Low_complexity Low_complexity 1 23 0 4 774 195 42 0 0 chr3 24814924 24814948 -134784835 + (CCA)n Simple_repeat Simple_repeat 1 24 0 4 774 508 278 82 12 chr3 24815527 24815698 -134784085 - MLT1E3 LTR MaLR -436 188 6 4 774 359 391 12 18 chr3 24816812 24816976 -134782807 - RSINE1 SINE B4 -2 163 1 4 774 3316 35 5 0 chr3 24817139 24817533 -134782250 + MTA_Mm LTR MaLR 1 396 0 4 774 308 317 132 32 chr3 24818172 24818452 -134781331 - L1M4 LINE L1 -870 5276 4969 4 774 3168 233 29 97 chr3 24818885 24819855 -134779928 + RMER13B LTR ERVK 5 908 0 4 774 29 60 0 0 chr3 24819930 24819980 -134779803 + AT_rich Low_complexity Low_complexity 1 50 0 4 774 189 0 0 0 chr3 24820708 24820729 -134779054 + (A)n Simple_repeat Simple_repeat 1 21 0 4 774 339 330 0 0 chr3 24820922 24821010 -134778773 + MTEa LTR MaLR 15 102 -277 4 774 456 369 103 57 chr3 24822127 24822639 -134777144 + L1ME2 LINE L1 5500 6035 -129 4 774 28 105 0 0 chr3 24822889 24822994 -134776789 + AT_rich Low_complexity Low_complexity 1 105 0 4 774 331 237 70 85 chr3 24824007 24824136 -134775647 + B1F SINE Alu 23 149 0 4 774 352 211 0 14 chr3 24824524 24824596 -134775187 + HAL1-3A_ME LINE L1 1975 2045 -813 4 774 3765 116 45 5 chr3 24826390 24826988 -134772795 - L1_Mm LINE L1 -517 5366 4745 4 774 2921 59 16 0 chr3 24826988 24827362 -134772421 + L1_Mus1 LINE L1 6188 6567 0 4 774 21 36 0 0 chr3 24830350 24830378 -134769405 + AT_rich Low_complexity Low_complexity 1 28 0 4 774 24 32 0 0 chr3 24831083 24831114 -134768669 + AT_rich Low_complexity Low_complexity 1 31 0 4 774 2073 212 89 91 chr3 24831517 24832102 -134767681 + RMER19C LTR ERVK 1 584 -27 4 774 4097 61 0 0 chr3 24832102 24832623 -134767160 - L1_Mm LINE L1 -878 5005 4485 4 774 6369 75 9 2 chr3 24832623 24833471 -134766312 + L1Md_F2 LINE L1 5729 6582 0 4 774 28 86 0 0 chr3 24833604 24833674 -134766109 + AT_rich Low_complexity Low_complexity 1 70 0 4 774 268 24 0 47 chr3 24835171 24835214 -134764569 + (TA)n Simple_repeat Simple_repeat 2 42 0 4 774 2867 282 93 20 chr3 24835316 24836327 -134763456 - Lx9 LINE L1 -171 7473 6389 4 774 22 56 0 0 chr3 24836967 24837003 -134762780 + AT_rich Low_complexity Low_complexity 1 36 0 4 774 903 112 0 0 chr3 24838279 24838422 -134761361 + (TC)n Simple_repeat Simple_repeat 2 144 0 4 774 486 0 0 0 chr3 24838422 24838475 -134761308 + (TG)n Simple_repeat Simple_repeat 1 54 0 4 774 276 326 93 51 chr3 24838522 24838783 -134761000 - B4 SINE B4 -16 276 5 4 774 1177 94 47 6 chr3 24838798 24838969 -134760814 - B2_Mm2 SINE B2 -14 181 4 4 774 757 240 114 34 chr3 24839576 24839813 -134759970 + MTD LTR MaLR 20 275 -144 4 774 504 0 0 0 chr3 24839819 24839875 -134759908 + (TC)n Simple_repeat Simple_repeat 1 56 0 4 774 279 0 0 0 chr3 24839875 24839905 -134759878 + (CA)n Simple_repeat Simple_repeat 1 31 0 4 774 194 315 19 0 chr3 24839915 24839969 -134759814 + L2a LINE L2 3301 3355 -71 4 774 865 277 131 45 chr3 24840319 24840701 -134759082 + MTD LTR MaLR 5 419 0 4 774 273 232 29 14 chr3 24840816 24840886 -134758897 + C-rich Low_complexity Low_complexity 6 76 0 4 774 270 56 0 0 chr3 24840886 24840922 -134758861 + (TG)n Simple_repeat Simple_repeat 1 36 0 4 774 1006 225 182 78 chr3 24841952 24842376 -134757407 + RMER21B LTR ERV1 1 468 -374 4 774 686 330 45 110 chr3 24843390 24843771 -134756012 - MTE2b LTR MaLR -12 367 12 4 774 783 40 0 0 chr3 24843772 24843871 -134755912 + (GA)n Simple_repeat Simple_repeat 2 100 0 4 774 359 331 114 19 chr3 24844019 24844281 -134755502 + B4 SINE B4 3 289 -3 4 774 1194 139 11 5 chr3 24844488 24844676 -134755107 + B2_Mm2 SINE B2 4 192 -3 4 774 442 330 26 36 chr3 24845993 24846185 -134753598 + B3A SINE B2 1 190 -8 4 774 421 312 22 49 chr3 24846206 24846432 -134753351 - Lx8 LINE L1 -816 6657 6438 4 774 551 296 36 61 chr3 24846652 24846929 -134752854 - L1_Mur3 LINE L1 -1915 3965 3696 4 774 37860 43 2 3 chr3 24846958 24853150 -134746633 - L1Md_T LINE L1 0 6585 301 4 774 5598 191 53 32 chr3 24853146 24853266 -134746517 + Lx7 LINE L1 4499 4624 -1256 4 774 180 0 0 0 chr3 24853266 24853286 -134746497 + (CA)n Simple_repeat Simple_repeat 2 21 0 4 774 5598 191 53 32 chr3 24853286 24854507 -134745276 + Lx7 LINE L1 4625 5867 -13 4 774 405 0 0 0 chr3 24854507 24854552 -134745231 + (TA)n Simple_repeat Simple_repeat 2 46 0 4 774 2199 242 103 56 chr3 24854552 24855063 -134744720 + Lx7 LINE L1 5871 6415 -1281 4 774 649 329 112 11 chr3 24855063 24855410 -134744373 + Lx7 LINE L1 6976 7357 -339 4 774 335 241 17 59 chr3 24855410 24855529 -134744254 - L1M2 LINE L1 -2810 3333 3220 4 774 534 206 86 0 chr3 24855586 24855761 -134744022 - Lx9 LINE L1 -43 7601 7412 4 774 448 288 36 103 chr3 24855802 24856240 -134743543 - L1_Mur3 LINE L1 -2809 3071 2663 4 774 22 0 0 0 chr3 24856790 24856812 -134742971 + AT_rich Low_complexity Low_complexity 1 22 0 4 774 804 143 0 33 chr3 24856873 24857025 -134742758 + Lx LINE L1 6501 6647 -7 4 774 24 32 0 0 chr3 24857032 24857063 -134742720 + AT_rich Low_complexity Low_complexity 1 31 0 4 774 26 0 0 0 chr3 24857331 24857357 -134742426 + AT_rich Low_complexity Low_complexity 1 26 0 4 774 1001 293 49 46 chr3 24857501 24857870 -134741913 + ORR1D2 LTR MaLR 1 370 0 4 774 351 0 0 0 chr3 24857987 24858026 -134741757 + (TG)n Simple_repeat Simple_repeat 2 40 0 4 774 480 214 8 67 chr3 24858144 24858316 -134741467 + L1_Mur1 LINE L1 210 410 -6572 4 774 2294 104 39 3 chr3 24858321 24858677 -134741106 + L1_Mus4 LINE L1 6266 6634 -2 4 774 37982 31 0 0 chr3 24861386 24868021 -134731762 - L1Md_T LINE L1 0 6585 1 4 774 322 308 53 0 chr3 24868028 24868161 -134731622 - Lx8 LINE L1 -130 7343 7204 4 774 998 298 87 18 chr3 24868191 24868581 -134731202 + MTD LTR MaLR 1 417 -2 4 774 282 247 157 0 chr3 24868609 24868698 -134731085 - Kanga1 DNA Tc2 -1475 270 168 4 774 300 269 136 65 chr3 24868741 24868896 -134730887 - Lx8 LINE L1 -444 7029 6864 4 774 1247 278 17 7 chr3 24868920 24869308 -134730475 - Lx7 LINE L1 -1741 5955 5589 4 774 342 0 0 0 chr3 24869382 24869420 -134730363 + (TG)n Simple_repeat Simple_repeat 1 38 0 4 774 331 326 115 11 chr3 24869461 24869644 -134730139 - L1M5 LINE L1 -886 5260 5059 4 774 731 326 120 57 chr3 24870235 24870800 -134728983 - Lx8 LINE L1 -55 7418 6818 4 774 219 69 0 0 chr3 24870970 24870999 -134728784 + (CATA)n Simple_repeat Simple_repeat 2 30 0 4 774 438 20 0 0 chr3 24871032 24871083 -134728700 + (TG)n Simple_repeat Simple_repeat 2 52 0 4 774 3028 105 111 21 chr3 24872486 24872972 -134726811 + Lx LINE L1 6116 6645 -9 4 774 315 0 0 0 chr3 24872972 24873007 -134726776 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 4 774 372 243 0 0 chr3 24873759 24873907 -134725876 + (CA)n Simple_repeat Simple_repeat 2 149 0 4 774 321 292 7 33 chr3 24873932 24874084 -134725699 + (CATA)n Simple_repeat Simple_repeat 4 151 0 4 774 328 241 96 26 chr3 24875372 24875487 -134724296 + L1M2 LINE L1 5439 5561 -736 4 774 239 0 0 31 chr3 24877164 24877196 -134722587 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 4 774 240 122 0 0 chr3 24877769 24877810 -134721973 + (TG)n Simple_repeat Simple_repeat 1 41 0 5 774 410 219 14 14 chr3 24878557 24878705 -134721078 + GA-rich Low_complexity Low_complexity 2 149 0 5 774 939 246 121 26 chr3 24878737 24879051 -134720732 + MTD LTR MaLR 77 406 -13 5 774 423 290 61 61 chr3 24879345 24879477 -134720306 + RSINE1 SINE B4 1 132 -33 5 774 231 342 59 20 chr3 24879828 24879980 -134719803 - Tigger7 DNA MER2_type -6 2485 2328 5 774 219 329 211 52 chr3 24882303 24882611 -134717172 + L2a LINE L2 3051 3407 -19 5 774 728 22 11 0 chr3 24882856 24882946 -134716837 + (TC)n Simple_repeat Simple_repeat 1 91 0 5 774 26 30 0 0 chr3 24883237 24883270 -134716513 + AT_rich Low_complexity Low_complexity 1 33 0 5 774 7928 6 0 0 chr3 24883594 24884482 -134715301 + L1Md_Gf LINE L1 255 1142 -5380 5 774 12858 21 0 0 chr3 24887331 24888832 -134710951 + L1Md_T LINE L1 4086 5586 -297 5 774 8877 7 0 0 chr3 24888832 24889852 -134709931 + L1Md_T LINE L1 5587 6582 0 5 774 213 39 0 0 chr3 24889865 24889891 -134709892 + (A)n Simple_repeat Simple_repeat 1 26 0 5 774 249 0 48 24 chr3 24891399 24891441 -134708342 + (TTTTTG)n Simple_repeat Simple_repeat 6 48 0 5 774 454 274 41 22 chr3 24892913 24893160 -134706623 - Lx8 LINE L1 -1487 5986 5738 5 774 1401 339 54 21 chr3 24893261 24893876 -134705907 + Lx8 LINE L1 6257 6891 -582 5 774 2165 119 6 3 chr3 24893877 24894206 -134705577 + L1_Mus3 LINE L1 6292 6621 -17 5 774 5296 84 2 1 chr3 24894206 24895168 -134704615 - L1_Mus4 LINE L1 -380 6256 5294 5 774 378 0 0 0 chr3 24895168 24895210 -134704573 + (TTTA)n Simple_repeat Simple_repeat 4 45 0 5 774 656 73 10 30 chr3 24895210 24895309 -134704474 - B1_Mm SINE Alu -20 127 31 5 774 474 151 12 0 chr3 24895309 24895395 -134704388 - L1_Mur1 LINE L1 -580 5306 5220 5 774 3941 158 38 50 chr3 24895395 24896018 -134703765 + RLTR13C2 LTR ERVK 1 610 -198 5 774 1331 100 9 9 chr3 24896018 24896230 -134703553 + L1Md_F2 LINE L1 6369 6580 -2 5 774 3941 158 38 50 chr3 24896230 24896424 -134703359 + RLTR13C2 LTR ERVK 611 808 0 5 774 4252 162 28 7 chr3 24896426 24897238 -134702545 - L1_Mus4 LINE L1 -663 5220 4392 5 774 399 21 0 0 chr3 24897252 24897300 -134702483 + (TTTG)n Simple_repeat Simple_repeat 1 48 0 5 774 257 164 62 62 chr3 24898807 24898872 -134700911 - MERVK26-int LTR ERVK -1781 5138 5074 5 774 22 35 0 0 chr3 24899244 24899273 -134700510 + AT_rich Low_complexity Low_complexity 1 29 0 5 774 32 0 0 0 chr3 24899315 24899347 -134700436 + AT_rich Low_complexity Low_complexity 1 32 0 5 774 212 29 86 0 chr3 24899367 24899402 -134700381 + (TTTTTG)n Simple_repeat Simple_repeat 3 40 0 5 774 872 69 9 0 chr3 24899403 24899519 -134700264 - B1_Mm SINE Alu 0 147 31 5 774 433 173 12 0 chr3 24899524 24899605 -134700178 - L1_Mm LINE L1 -585 5298 5217 5 774 3037 113 8 39 chr3 24899605 24900094 -134699689 + RLTR13C2 LTR ERVK 1 474 -334 5 774 4945 77 55 1 chr3 24901013 24901703 -134698080 - L1_Mus3 LINE L1 0 6638 5912 5 774 2287 109 84 100 chr3 24902055 24902545 -134697238 + RLTR45 LTR ERVK 1 482 0 5 774 2886 242 41 2 chr3 24902784 24903417 -134696366 + Lx5 LINE L1 6393 7050 0 5 774 273 57 0 0 chr3 24903418 24903453 -134696330 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 5 774 613 292 41 10 chr3 24903461 24903658 -134696125 + B3 SINE B2 5 207 -9 5 775 2892 107 54 7 chr3 24903843 24903949 -134695834 - Lx3A LINE L1 0 6981 6879 5 775 203 0 0 36 chr3 24903949 24903977 -134695806 + (CACCC)n Simple_repeat Simple_repeat 3 29 0 5 775 2892 107 54 7 chr3 24903977 24904311 -134695472 - Lx3A LINE L1 -103 6878 6522 5 775 213 129 47 56 chr3 24904561 24904668 -134695115 + A-rich Low_complexity Low_complexity 3 108 0 5 775 980 99 7 0 chr3 24904805 24904956 -134694827 + (TTCCC)n Simple_repeat Simple_repeat 4 155 0 5 775 394 76 0 43 chr3 24905014 24905083 -134694700 + (TTCC)n Simple_repeat Simple_repeat 3 68 0 5 775 4035 106 35 25 chr3 24905260 24906345 -134693438 - RLTR13D1 LTR ERVK -14 792 1 5 775 471 280 74 78 chr3 24906712 24906773 -134693010 + Lx9 LINE L1 6945 7017 -627 5 775 1728 157 28 101 chr3 24906773 24907128 -134692655 - ORR1A4 LTR MaLR 0 329 1 5 775 471 280 74 78 chr3 24907128 24907310 -134692473 + Lx9 LINE L1 7018 7187 -457 5 775 21 71 0 0 chr3 24907617 24907659 -134692124 + AT_rich Low_complexity Low_complexity 1 42 0 5 775 242 305 98 59 chr3 24910495 24910781 -134689002 - L1MA4A LINE L1 -368 5935 5639 5 775 3940 65 2 13 chr3 24910781 24911307 -134688476 + L1Md_F2 LINE L1 6061 6580 -2 5 775 519 317 111 24 chr3 24911532 24911996 -134687787 - L1MA4A LINE L1 -495 5385 4912 5 775 3565 64 6 6 chr3 24912938 24913407 -134686376 + L1Md_F2 LINE L1 6114 6582 0 5 775 188 348 91 35 chr3 24913426 24913569 -134686214 - L3b LINE CR1 -107 375 225 5 775 435 220 149 54 chr3 24913728 24913949 -134685834 + L1_Mur3 LINE L1 5176 5417 -463 5 775 405 0 0 0 chr3 24914497 24914542 -134685241 + (CTTG)n Simple_repeat Simple_repeat 4 48 0 5 775 330 115 0 0 chr3 24914597 24914649 -134685134 + (CA)n Simple_repeat Simple_repeat 2 53 0 5 775 188 348 91 35 chr3 24914967 24915110 -134684673 + L3b LINE CR1 225 375 -107 5 775 2690 57 8 8 chr3 24915128 24915481 -134684302 - L1Md_F2 LINE L1 0 6582 6230 5 775 795 313 12 4 chr3 24915543 24915787 -134683996 + Lx8 LINE L1 6372 6617 -856 5 775 932 330 66 34 chr3 24915798 24916391 -134683392 + Lx8 LINE L1 6662 7273 -200 5 775 1575 273 58 11 chr3 24917075 24917942 -134681841 + L1MA6 LINE L1 5352 6284 -16 5 775 692 226 0 7 chr3 24919516 24919663 -134680120 + B1_Mus1 SINE Alu 3 148 0 5 775 183 80 0 0 chr3 24919698 24919723 -134680060 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 5 775 365 306 0 0 chr3 24920007 24920121 -134679662 + MER68 LTR ERVL 197 354 -253 5 775 182 37 37 0 chr3 24920577 24920604 -134679179 + (TA)n Simple_repeat Simple_repeat 2 29 0 5 775 2213 52 7 24 chr3 24920616 24920913 -134678870 - L1_Mus1 LINE L1 -5 6562 6271 5 775 13240 66 1 0 chr3 24922589 24925084 -134674699 - L1Md_F2 LINE L1 0 6582 4152 5 775 267 365 36 54 chr3 24925084 24925252 -134674531 + MER20 DNA MER1_type 48 212 -7 5 775 648 70 0 0 chr3 24926132 24926218 -134673565 + (TC)n Simple_repeat Simple_repeat 1 86 0 5 775 2934 179 95 25 chr3 24926895 24927495 -134672288 + RLTR26 LTR ERVK 1 642 0 5 775 260 27 27 0 chr3 24927509 24927546 -134672237 + (CAAAA)n Simple_repeat Simple_repeat 3 40 0 5 775 483 287 0 0 chr3 24927623 24927724 -134672059 + RSINE1 SINE B4 11 111 -54 5 775 300 27 0 0 chr3 24927752 24927789 -134671994 + (CA)n Simple_repeat Simple_repeat 1 37 0 5 775 192 361 63 24 chr3 24931312 24931519 -134668264 - MIR SINE MIR -30 232 18 5 775 613 284 50 14 chr3 24931824 24932045 -134667738 - Tigger10 DNA Tigger -1572 271 43 5 775 3077 96 29 4 chr3 24932521 24932973 -134666810 + Lx3_Mus LINE L1 6536 6998 -11 5 775 35414 47 0 3 chr3 24933069 24938502 -134661281 + L1Md_T LINE L1 77 5589 -297 5 775 8427 33 0 0 chr3 24938503 24939498 -134660285 + L1Md_T LINE L1 5591 6585 0 5 775 236 282 112 45 chr3 24939501 24939590 -134660193 + MTE2a LTR MaLR 17 111 -268 5 775 801 249 86 18 chr3 24939605 24939826 -134659957 + MTE2a LTR MaLR 143 378 -1 5 775 198 0 0 0 chr3 24939848 24939870 -134659913 + (CCA)n Simple_repeat Simple_repeat 1 22 0 5 775 514 291 116 47 chr3 24940020 24940704 -134659079 + L1M2 LINE L1 4135 4865 -1278 5 775 2291 210 52 10 chr3 24940850 24941351 -134658432 + RLTR12B LTR ERVK 1 522 -6 5 775 318 282 8 25 chr3 24941447 24941567 -134658216 + L1M2 LINE L1 5651 5768 -523 5 775 3370 139 49 7 chr3 24942364 24942938 -134656845 + Lx4A LINE L1 5865 6462 -596 5 775 22 0 0 0 chr3 24948942 24948964 -134650819 + AT_rich Low_complexity Low_complexity 1 22 0 5 775 23 33 0 0 chr3 24954651 24954681 -134645102 + AT_rich Low_complexity Low_complexity 1 30 0 5 775 306 0 0 0 chr3 24955634 24955668 -134644115 + (TAA)n Simple_repeat Simple_repeat 1 34 0 5 775 22 0 0 0 chr3 24955668 24955690 -134644093 + AT_rich Low_complexity Low_complexity 1 22 0 5 775 567 93 0 0 chr3 24955847 24955933 -134643850 + L1_Mus2 LINE L1 6481 6566 0 5 775 25 51 0 0 chr3 24956319 24956358 -134643425 + AT_rich Low_complexity Low_complexity 1 39 0 5 775 358 358 58 37 chr3 24958670 24958911 -134640872 + MLT1A0 LTR MaLR 1 246 -119 5 775 554 247 96 27 chr3 24959749 24959936 -134639847 + RMER30 DNA MER1_type 1 200 -2 5 775 317 318 0 43 chr3 24959940 24960032 -134639751 - Tigger5 DNA MER2_type -2185 221 134 5 775 1277 244 150 3 chr3 24960036 24960369 -134639414 - MTD LTR MaLR -37 382 1 5 775 282 240 118 13 chr3 24960708 24960784 -134638999 + MER34 LTR ERV1 375 458 -84 5 775 21 0 0 0 chr3 24961186 24961207 -134638576 + AT_rich Low_complexity Low_complexity 1 21 0 5 775 23 54 0 0 chr3 24961242 24961279 -134638504 + AT_rich Low_complexity Low_complexity 1 37 0 5 775 1093 75 7 0 chr3 24963487 24963633 -134636150 - B1_Mm SINE Alu 0 147 1 5 775 2676 248 135 69 chr3 24964412 24965232 -134634551 + Lx7 LINE L1 6432 7369 -327 5 775 315 0 0 0 chr3 24965232 24965267 -134634516 + (TTA)n Simple_repeat Simple_repeat 2 36 0 5 775 2676 248 135 69 chr3 24965267 24965537 -134634246 + Lx7 LINE L1 7370 7594 -102 5 775 25 31 0 0 chr3 24965551 24965583 -134634200 + AT_rich Low_complexity Low_complexity 1 32 0 5 775 21 0 0 0 chr3 24966089 24966110 -134633673 + AT_rich Low_complexity Low_complexity 1 21 0 5 775 578 311 47 0 chr3 24966390 24966538 -134633245 - B3 SINE B2 -9 207 53 5 775 338 164 33 0 chr3 24966531 24966592 -134633191 - B3 SINE B2 -101 115 53 5 775 398 234 93 0 chr3 24966585 24966692 -134633091 - B3A SINE B2 -81 117 1 5 775 241 320 73 109 chr3 24967676 24967813 -134631970 + B1F2 SINE Alu 2 133 -16 5 775 330 215 0 0 chr3 24967816 24967895 -134631888 + (CCA)n Simple_repeat Simple_repeat 2 80 0 5 775 287 308 19 9 chr3 24967895 24968000 -134631783 + Lx7 LINE L1 6776 6881 -815 5 775 2337 102 6 3 chr3 24968000 24968346 -134631437 + L1_Mus3 LINE L1 6292 6638 0 5 775 353 227 200 17 chr3 24969054 24969229 -134630554 + HAL1 LINE L1 1480 1686 -821 6 775 1762 69 4 17 chr3 24969508 24969745 -134630038 + L1_Mus1 LINE L1 6333 6566 -1 6 775 2060 265 116 10 chr3 24970817 24971404 -134628379 - RMER1B Other Other -417 649 1 6 775 405 39 0 0 chr3 24971612 24971663 -134628120 + (TG)n Simple_repeat Simple_repeat 2 52 0 6 775 264 319 0 0 chr3 24971671 24971743 -134628040 - ID4 SINE ID -11 72 1 6 775 279 167 0 0 chr3 24972095 24972161 -134627622 + (TG)n Simple_repeat Simple_repeat 1 66 0 6 775 425 157 0 37 chr3 24972213 24972306 -134627477 - B1_Mur1 SINE Alu -22 127 13 6 775 1190 0 0 0 chr3 24972400 24972534 -134627249 + B1_Mus2 SINE Alu 5 138 -9 6 775 344 0 65 0 chr3 24972534 24972580 -134627203 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 6 775 395 179 21 0 chr3 24973466 24973561 -134626222 + CT-rich Low_complexity Low_complexity 1 97 0 6 775 25 0 0 0 chr3 24974349 24974374 -134625409 + AT_rich Low_complexity Low_complexity 1 25 0 6 775 333 198 8 8 chr3 24974748 24974877 -134624906 + (TG)n Simple_repeat Simple_repeat 1 129 0 6 775 963 224 63 0 chr3 24975118 24975436 -134624347 - Lx9 LINE L1 -48 7596 7191 6 775 970 262 27 39 chr3 24975433 24975766 -134624017 + Lx9 LINE L1 6822 7150 -494 6 775 405 0 0 0 chr3 24975942 24975987 -134623796 + (TCTA)n Simple_repeat Simple_repeat 3 47 0 6 775 191 265 57 29 chr3 24977223 24977293 -134622490 + MIR SINE MIR 184 255 -7 6 775 288 91 0 0 chr3 24977531 24977575 -134622208 + (TA)n Simple_repeat Simple_repeat 1 44 0 6 775 405 0 0 0 chr3 24979159 24979204 -134620579 + (TG)n Simple_repeat Simple_repeat 2 46 0 6 775 293 276 164 87 chr3 24980034 24980177 -134619606 - B4A SINE B4 -94 198 37 6 775 1330 271 57 10 chr3 24980177 24980579 -134619204 - MTC LTR MaLR 0 421 1 6 775 293 276 164 87 chr3 24980579 24980618 -134619165 - B4A SINE B4 -256 36 2 6 775 267 340 85 0 chr3 24980762 24980903 -134618880 + Lx8 LINE L1 6616 6768 -705 6 775 14702 194 47 15 chr3 24980914 24984283 -134615500 + L1_Mur3 LINE L1 2285 5760 -120 6 775 428 116 0 0 chr3 24984287 24984356 -134615427 - L1Md_F2 LINE L1 -12 6570 6502 6 775 900 302 25 11 chr3 24986154 24986432 -134613351 + B4 SINE B4 1 282 -10 6 775 368 328 16 31 chr3 24986929 24987058 -134612725 - RSINE1 SINE B4 -36 129 3 6 775 252 305 187 41 chr3 24988125 24988248 -134611535 - MLT1A LTR MaLR -11 363 223 6 775 2490 77 77 0 chr3 24988417 24988781 -134611002 - MTA_Mm LTR MaLR -3 393 2 6 775 477 50 0 0 chr3 24989103 24989163 -134610620 + (TA)n Simple_repeat Simple_repeat 2 61 0 6 775 266 50 25 0 chr3 24989356 24989396 -134610387 + (TAAA)n Simple_repeat Simple_repeat 2 42 0 6 775 315 0 0 0 chr3 24989396 24989430 -134610353 + (GA)n Simple_repeat Simple_repeat 2 36 0 6 775 441 0 0 0 chr3 24989548 24989597 -134610186 + (TC)n Simple_repeat Simple_repeat 2 50 0 6 775 366 23 0 0 chr3 24989597 24989639 -134610144 + (TG)n Simple_repeat Simple_repeat 2 44 0 6 775 658 212 20 183 chr3 24989639 24989841 -134609942 + ORR1C2 LTR MaLR 216 384 0 6 775 675 279 61 5 chr3 24989860 24990058 -134609725 - B3 SINE B2 -2 214 6 6 775 1913 160 47 11 chr3 24990104 24990484 -134609299 - Lx4A LINE L1 -4 7054 6661 6 775 2449 153 21 5 chr3 24990484 24990905 -134608878 + Lx4A LINE L1 5789 6216 -842 6 775 185 86 57 0 chr3 24990924 24990959 -134608824 + (TTTTTG)n Simple_repeat Simple_repeat 2 38 0 6 775 2798 140 42 15 chr3 24990989 24991446 -134608337 + Lx4A LINE L1 6224 6692 -366 6 775 695 298 22 22 chr3 24991451 24991674 -134608109 - B4 SINE B4 -69 223 1 6 775 324 311 136 5 chr3 24992080 24992264 -134607519 + L1ME1 LINE L1 5856 6063 -116 6 775 368 273 24 18 chr3 24993381 24993501 -134606282 - B1_Mur1 SINE Alu -1 148 1 6 775 336 357 30 35 chr3 24993727 24993930 -134605853 - Lx9 LINE L1 -242 7402 7201 6 775 241 275 0 0 chr3 24993929 24993998 -134605785 + Lx9 LINE L1 7405 7473 -171 6 775 318 26 0 0 chr3 24993999 24994038 -134605745 + (CA)n Simple_repeat Simple_repeat 1 39 0 6 775 24 32 0 0 chr3 24994335 24994366 -134605417 + AT_rich Low_complexity Low_complexity 1 31 0 6 775 21 71 0 0 chr3 24996323 24996365 -134603418 + AT_rich Low_complexity Low_complexity 1 42 0 6 775 424 312 149 38 chr3 24996461 24996791 -134602992 + L1M5 LINE L1 3089 3458 -2688 6 775 3069 61 8 2 chr3 24996791 24997185 -134602598 + MTA_Mm LTR MaLR 1 396 0 6 775 424 312 149 38 chr3 24997185 24997297 -134602486 + L1M5 LINE L1 3459 3580 -2566 6 775 564 311 15 0 chr3 24997310 24997445 -134602338 + RSINE1 SINE B4 4 140 -25 6 775 354 45 0 0 chr3 24997446 24997490 -134602293 + (CA)n Simple_repeat Simple_repeat 1 44 0 6 775 189 0 0 0 chr3 24997490 24997510 -134602273 + (GA)n Simple_repeat Simple_repeat 2 22 0 6 775 253 236 0 27 chr3 24997512 24997529 -134602254 + (CAGA)n Simple_repeat Simple_repeat 3 18 0 6 775 183 80 0 0 chr3 24997529 24997554 -134602229 + (CA)n Simple_repeat Simple_repeat 2 26 0 6 775 253 236 0 27 chr3 24997554 24997610 -134602173 + (CAGA)n Simple_repeat Simple_repeat 3 58 0 6 775 462 205 23 8 chr3 24997633 24997761 -134602022 + GA-rich Low_complexity Low_complexity 2 131 0 6 775 1311 92 16 11 chr3 24997761 24997948 -134601835 - B2_Mm2 SINE B2 -7 188 1 6 775 261 298 134 22 chr3 24998091 24998225 -134601558 + B1F SINE Alu 1 149 0 6 775 193 91 0 64 chr3 24998228 24998275 -134601508 + A-rich Low_complexity Low_complexity 3 46 0 6 775 245 218 8 151 chr3 24998426 24998545 -134601238 + MT2B LTR ERVL 163 264 -337 6 775 670 165 8 52 chr3 24998440 24998574 -134601209 + B1_Mur3 SINE Alu 13 140 -9 6 775 201 74 0 0 chr3 24998574 24998601 -134601182 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 6 775 23 33 0 0 chr3 24998699 24998729 -134601054 + AT_rich Low_complexity Low_complexity 1 30 0 6 775 2149 186 65 23 chr3 24998735 24998826 -134600957 - RLTR16 LTR ERVK -2 503 413 6 775 201 74 0 0 chr3 24998826 24998853 -134600930 + (CA)n Simple_repeat Simple_repeat 2 28 0 6 775 2149 186 65 23 chr3 24998853 24999239 -134600544 - RLTR16 LTR ERVK -93 412 6 6 775 404 87 29 0 chr3 24999580 24999649 -134600134 + (TATG)n Simple_repeat Simple_repeat 4 74 0 6 775 460 284 18 0 chr3 24999656 24999765 -134600018 - B3A SINE B2 -56 142 32 6 775 831 35 61 0 chr3 24999886 25000000 -134599783 + L1Md_A LINE L1 423 543 -6181 6 775 36330 12 1 7 chr3 25000000 25005291 -134594492 + L1Md_A LINE L1 336 5586 -297 1 775 8827 15 0 0 chr3 25005291 25006286 -134593497 + L1Md_A LINE L1 5587 6581 -1 1 775 213 164 0 56 chr3 25006454 25006525 -134593258 + A-rich Low_complexity Low_complexity 4 70 0 2 775 265 236 52 65 chr3 25007026 25007103 -134592680 + PB1D7 SINE Alu 40 115 -5 3 775 230 170 0 159 chr3 25007048 25007111 -134592672 + ID_B1 SINE B4 172 224 0 4 775 472 239 0 17 chr3 25007458 25007577 -134592206 - Lx9 LINE L1 -696 6948 6832 5 775 325 241 316 0 chr3 25007584 25007755 -134592028 + Lx9 LINE L1 7350 7574 -70 6 775 26 64 0 0 chr3 25007773 25007820 -134591963 + AT_rich Low_complexity Low_complexity 1 47 0 7 775 21 0 0 0 chr3 25008574 25008595 -134591188 + AT_rich Low_complexity Low_complexity 1 21 0 8 775 180 0 0 0 chr3 25010453 25010473 -134589310 + (TTG)n Simple_repeat Simple_repeat 2 21 0 9 775 415 374 52 69 chr3 25010750 25011169 -134588614 + MTE-int LTR MaLR 91 502 -1078 1 775 381 359 12 36 chr3 25011475 25011640 -134588143 + MTE-int LTR MaLR 1367 1527 -53 1 775 229 224 11 56 chr3 25012497 25012587 -134587196 + T-rich Low_complexity Low_complexity 2 87 0 1 775 266 254 16 100 chr3 25013332 25013437 -134586346 - B1F SINE Alu 0 149 53 1 775 255 132 0 0 chr3 25013450 25013488 -134586295 - Lx9 LINE L1 -395 7249 7212 1 775 1025 193 161 3 chr3 25013508 25013825 -134585958 + Lx9 LINE L1 7268 7634 -10 1 775 534 254 43 12 chr3 25016355 25016512 -134583271 + B3 SINE B2 24 195 0 1 775 306 333 33 13 chr3 25018616 25018768 -134581015 - Lx8 LINE L1 -249 7224 7070 1 775 5766 43 8 0 chr3 25018771 25019541 -134580242 - L1Md_F2 LINE L1 0 6582 5873 1 775 1138 51 0 0 chr3 25019541 25019678 -134580105 - B1_Mus2 SINE Alu -8 139 3 1 775 203 149 37 86 chr3 25019678 25019689 -134580094 + T-rich Low_complexity Low_complexity 3 12 0 1 775 1418 227 10 0 chr3 25021146 25021445 -134578338 + Lx7 LINE L1 6553 6854 -842 2 775 22 0 0 0 chr3 25022377 25022399 -134577384 + AT_rich Low_complexity Low_complexity 1 22 0 2 775 272 352 130 37 chr3 25022846 25023008 -134576775 + MLT1J LTR MaLR 1 177 -335 2 775 337 307 0 26 chr3 25023612 25023689 -134576094 + ID4 SINE ID 6 80 -3 2 775 3891 150 75 45 chr3 25023960 25024834 -134574949 - RMER17A2 LTR ERVK -5 901 1 2 775 5530 19 0 0 chr3 25024991 25025620 -134574163 - L1Md_A LINE L1 0 6582 5954 2 775 313 399 98 0 chr3 25025700 25025833 -134573950 - RSINE1 SINE B4 -17 148 3 2 775 23 0 0 0 chr3 25026676 25026699 -134573084 + AT_rich Low_complexity Low_complexity 1 23 0 2 775 462 280 102 53 chr3 25026941 25027186 -134572597 + RMER2 LTR ERV1 290 546 -21 2 775 2814 31 131 0 chr3 25028195 25028545 -134571238 - MTA_Mm LTR MaLR 0 396 1 2 775 232 206 80 93 chr3 25029544 25029619 -134570164 + B4 SINE B4 4 77 -215 3 775 482 279 142 23 chr3 25029552 25029728 -134570055 + B3 SINE B2 10 206 -10 3 775 285 135 0 0 chr3 25029728 25029780 -134570003 + (GA)n Simple_repeat Simple_repeat 1 52 0 3 775 916 96 44 7 chr3 25029819 25029955 -134569828 + B1_Mus1 SINE Alu 2 142 -6 3 775 225 0 0 0 chr3 25029957 25029982 -134569801 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 3 775 204 125 0 0 chr3 25031555 25031587 -134568196 + (TAA)n Simple_repeat Simple_repeat 3 34 0 3 775 721 237 108 25 chr3 25031660 25031946 -134567837 - Lx8 LINE L1 -4 7469 7160 3 775 235 250 11 11 chr3 25032161 25032250 -134567533 + (TA)n Simple_repeat Simple_repeat 2 90 0 3 775 346 186 0 14 chr3 25032656 25032727 -134567056 + Lx7 LINE L1 7627 7696 0 3 775 21 0 0 0 chr3 25032728 25032749 -134567034 + AT_rich Low_complexity Low_complexity 1 21 0 3 775 180 0 0 0 chr3 25033834 25033854 -134565929 + (A)n Simple_repeat Simple_repeat 1 20 0 4 775 1260 204 27 33 chr3 25034132 25034461 -134565322 + Lx7 LINE L1 6846 7172 -524 4 776 216 0 0 0 chr3 25034975 25034999 -134564784 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 4 776 319 247 25 62 chr3 25035848 25036008 -134563775 - Lx9 LINE L1 -2 7642 7489 4 776 301 270 136 29 chr3 25036273 25036376 -134563407 + RMER2 LTR ERV1 346 459 -108 4 776 354 197 0 13 chr3 25036493 25036570 -134563213 - Lx9 LINE L1 -196 7448 7373 4 776 216 326 122 7 chr3 25036633 25036781 -134563002 + MIR SINE MIR 97 261 -1 4 776 3523 5 8 0 chr3 25036988 25037381 -134562402 + MTA_Mm LTR MaLR 1 396 0 4 776 9269 24 8 1 chr3 25037381 25038471 -134561312 + MTA_Mm-int LTR MaLR 1 1098 0 4 776 3510 8 8 0 chr3 25038471 25038864 -134560919 + MTA_Mm LTR MaLR 1 396 0 4 776 462 272 133 114 chr3 25039712 25040392 -134559391 + Lx8 LINE L1 5287 5961 -1512 4 776 754 262 214 27 chr3 25040741 25041152 -134558631 + Lx8 LINE L1 6347 6834 -639 4 776 208 267 57 47 chr3 25041511 25041617 -134558166 + L2a LINE L2 2440 2546 -873 4 776 412 314 133 27 chr3 25041604 25042022 -134557761 + L2a LINE L2 2724 3176 -250 4 776 236 291 181 19 chr3 25042035 25042140 -134557643 + L2a LINE L2 3273 3394 -32 4 776 311 250 85 64 chr3 25043493 25043634 -134556149 + B1F2 SINE Alu 1 144 -5 4 776 291 54 0 0 chr3 25044669 25044706 -134555077 + (A)n Simple_repeat Simple_repeat 1 37 0 5 776 350 329 16 144 chr3 25045281 25045469 -134554314 + B4A SINE B4 48 211 -81 5 776 2067 155 146 48 chr3 25045445 25045905 -134553878 + RLTR28 LTR ERVL 20 524 0 5 776 387 213 115 21 chr3 25046697 25046793 -134552990 - B3 SINE B2 -82 134 30 5 776 322 326 55 6 chr3 25047009 25047191 -134552592 - L1MB3 LINE L1 -306 5877 5687 5 776 321 380 94 29 chr3 25047191 25047362 -134552421 + MER21B LTR ERV1 498 679 -184 5 776 4223 64 7 4 chr3 25047374 25047920 -134551863 + L1Md_F2 LINE L1 6035 6582 0 5 776 334 302 25 25 chr3 25047996 25048159 -134551624 - L1M2 LINE L1 -687 5613 5451 5 776 1532 165 73 88 chr3 25048159 25048558 -134551225 + RLTR9C LTR ERVK 1 393 0 5 776 320 218 28 56 chr3 25048559 25048666 -134551117 + MMETn-int LTR ERVK 1 104 -4740 5 776 3659 186 49 86 chr3 25048701 25049804 -134549979 + MMETn-int LTR ERVK 108 1169 -3675 5 776 2400 184 28 6 chr3 25049831 25050328 -134549455 + ETnERV2-int LTR ERVK 2496 3003 -4403 5 776 655 151 13 10 chr3 25050328 25050443 -134549340 + RLTR13D1 LTR ERVK 502 603 -203 6 776 3793 185 47 42 chr3 25051001 25053010 -134546773 + ETnERV2-int LTR ERVK 2356 4085 -3321 5 776 436 123 0 0 chr3 25053228 25053301 -134546482 + ETnERV2-int LTR ERVK 7333 7405 -1 5 776 1812 171 30 64 chr3 25053301 25053708 -134546075 + RLTR9C LTR ERVK 1 393 0 5 776 219 154 0 0 chr3 25053791 25053830 -134545953 + T-rich Low_complexity Low_complexity 1 39 0 6 776 235 245 75 9 chr3 25053830 25053937 -134545846 - L1MB3 LINE L1 -1439 4701 4588 5 776 3518 73 30 2 chr3 25054040 25054509 -134545274 + RLTR45 LTR ERVK 1 482 0 6 776 3367 72 66 15 chr3 25054509 25055141 -134544642 + RLTR45-int LTR ERVK 1 692 -6552 6 776 1069 51 0 0 chr3 25055447 25055585 -134544198 + RLTR45-int LTR ERVK 681 818 -6426 6 776 10914 44 50 7 chr3 25056244 25058022 -134541761 + RLTR45-int LTR ERVK 1358 3212 -4032 6 776 3667 82 39 16 chr3 25057992 25058560 -134541223 + RLTR45-int LTR ERVK 3380 3960 -3284 6 776 7842 45 1 8 chr3 25058558 25059577 -134540206 + RLTR45-int LTR ERVK 5061 6072 -1172 6 776 2032 105 13 7 chr3 25059591 25059898 -134539885 + RLTR13B1 LTR ERVK 200 508 -385 6 776 7419 43 0 3 chr3 25059898 25060813 -134538970 + RLTR45-int LTR ERVK 6333 7244 0 6 776 3539 70 30 2 chr3 25060813 25061282 -134538501 + RLTR45 LTR ERVK 1 482 0 6 776 490 331 99 36 chr3 25061288 25061651 -134538132 - L1MB3 LINE L1 -1652 4494 4109 5 776 29 94 0 0 chr3 25061711 25061796 -134537987 + AT_rich Low_complexity Low_complexity 1 85 0 6 776 411 298 72 8 chr3 25061991 25062116 -134537667 - RMER10B LTR ERVL 0 398 266 6 776 189 139 0 0 chr3 25062507 25062550 -134537233 + (CTTA)n Simple_repeat Simple_repeat 3 45 0 6 776 2352 112 25 11 chr3 25062711 25063073 -134536710 - RLTR9A LTR ERVK 0 368 2 6 776 355 74 0 36 chr3 25063093 25063149 -134536634 - ETnERV2-int LTR ERVK -22 7384 7331 6 776 270 284 33 33 chr3 25063353 25063473 -134536310 - ETnERV2-int LTR ERVK -981 6425 6306 6 776 6192 168 10 21 chr3 25063598 25064780 -134535003 - ETnERV2-int LTR ERVK -3331 4075 2872 6 776 333 0 0 0 chr3 25064780 25064817 -134534966 + (CA)n Simple_repeat Simple_repeat 2 38 0 6 776 6192 201 55 89 chr3 25064817 25066628 -134533155 - ETnERV2-int LTR ERVK -3477 3929 1549 6 776 657 0 0 0 chr3 25066628 25066701 -134533082 + (GAA)n Simple_repeat Simple_repeat 1 73 0 6 776 531 326 52 4 chr3 25066701 25066825 -134532958 - ETnERV2-int LTR ERVK -1766 1548 1416 6 776 3693 221 82 38 chr3 25066940 25068088 -134531695 - RMER16-int LTR ERVK -3869 1537 340 7 776 315 0 0 0 chr3 25068099 25068134 -134531649 + (TC)n Simple_repeat Simple_repeat 2 36 0 7 776 243 0 0 0 chr3 25068170 25068197 -134531586 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 7 776 2274 134 5 8 chr3 25068532 25068901 -134530882 - RLTR9A LTR ERVK 0 368 1 7 776 729 229 46 54 chr3 25068905 25069145 -134530638 - RMER15 LTR ERVL -14 561 324 7 776 336 148 0 0 chr3 25069606 25069667 -134530116 + RLTR12A LTR ERVK 4 64 -504 7 776 2924 168 10 87 chr3 25069667 25069980 -134529803 - RLTR12A LTR ERVK -2 566 256 7 776 360 55 82 0 chr3 25069980 25070053 -134529730 + (TCTG)n Simple_repeat Simple_repeat 2 80 0 7 776 2924 168 10 87 chr3 25070053 25070352 -134529431 - RLTR12A LTR ERVK -313 255 1 7 776 817 349 147 19 chr3 25070604 25071080 -134528703 + MLT1F2 LTR MaLR 24 560 0 7 776 242 358 68 80 chr3 25071279 25071516 -134528267 - LTR52 LTR ERVL -175 246 13 7 776 373 231 0 0 chr3 25073279 25073344 -134526439 + ID_B1 SINE B4 142 206 -18 8 776 4306 127 52 44 chr3 25073380 25074612 -134525171 + L1_Mus1 LINE L1 5267 6526 -41 8 776 1044 24 0 0 chr3 25074652 25074775 -134525008 + (GAAA)n Simple_repeat Simple_repeat 2 124 0 8 776 532 106 0 0 chr3 25074935 25075029 -134524754 + L1_Mus3 LINE L1 6545 6638 0 8 776 21 36 0 0 chr3 25075289 25075317 -134524466 + AT_rich Low_complexity Low_complexity 1 28 0 8 776 363 304 78 0 chr3 25076480 25076582 -134523201 - ID_B1 SINE B4 -8 216 107 8 776 854 279 0 0 chr3 25077120 25077328 -134522455 - B3 SINE B2 -8 208 1 8 776 361 93 0 36 chr3 25077452 25077508 -134522275 - HAL1-3A_ME LINE L1 -830 2028 1975 8 776 672 167 0 0 chr3 25077517 25077661 -134522122 + (TG)n Simple_repeat Simple_repeat 2 145 0 8 776 519 354 41 7 chr3 25077883 25078173 -134521610 - Lx8 LINE L1 -185 7288 6989 8 776 778 277 131 47 chr3 25078190 25078634 -134521149 + Lx8 LINE L1 6503 6983 -490 9 776 26 50 0 0 chr3 25079197 25079237 -134520546 + AT_rich Low_complexity Low_complexity 1 40 0 9 776 1082 268 108 20 chr3 25079975 25080280 -134519503 - MTD LTR MaLR 0 419 88 9 776 28 0 0 0 chr3 25080289 25080317 -134519466 + AT_rich Low_complexity Low_complexity 1 28 0 9 776 216 281 85 92 chr3 25080479 25080498 -134519285 - ID_B1 SINE B4 -3 221 196 9 776 405 0 0 0 chr3 25080498 25080543 -134519240 + (TG)n Simple_repeat Simple_repeat 2 46 0 9 776 216 281 85 92 chr3 25080543 25080664 -134519119 - ID_B1 SINE B4 -29 195 82 9 776 499 357 78 37 chr3 25081234 25081255 -134518528 - B4A SINE B4 0 292 272 9 776 492 18 0 0 chr3 25081255 25081312 -134518471 + (CA)n Simple_repeat Simple_repeat 2 58 0 9 776 499 357 78 37 chr3 25081312 25081547 -134518236 - B4A SINE B4 -21 271 26 9 776 790 263 255 21 chr3 25081547 25081873 -134517910 - MTB_Mm LTR MaLR 0 407 6 9 776 690 13 0 0 chr3 25082250 25082329 -134517454 + (TATATG)n Simple_repeat Simple_repeat 6 84 0 9 776 243 235 119 36 chr3 25082826 25082910 -134516873 - LTR33B LTR ERVL -8 495 405 1 776 1237 65 0 29 chr3 25083469 25083642 -134516141 - B2_Mm2 SINE B2 -26 169 2 1 776 225 314 27 73 chr3 25083827 25083937 -134515846 + MamGypLTR2 LTR Gypsy 56 160 -1029 1 776 633 214 60 22 chr3 25083940 25084074 -134515709 - B1_Mur1 SINE Alu -8 141 3 1 776 22 35 0 0 chr3 25084246 25084275 -134515508 + AT_rich Low_complexity Low_complexity 1 29 0 1 776 254 184 89 38 chr3 25084319 25084398 -134515385 - MER2 DNA MER2_type -160 185 103 1 776 561 125 0 0 chr3 25084404 25084492 -134515291 + (CA)n Simple_repeat Simple_repeat 1 88 0 1 776 570 188 102 0 chr3 25084841 25084969 -134514814 + Lx2 LINE L1 6478 6618 -379 1 776 288 347 30 61 chr3 25085068 25085200 -134514583 + LTR33B LTR ERVL 138 265 -238 1 776 291 319 0 11 chr3 25085189 25085281 -134514502 + LTR33B LTR ERVL 405 495 -8 1 776 3058 184 29 12 chr3 25085400 25085984 -134513799 - Lx2 LINE L1 0 6997 6404 1 776 1095 101 0 0 chr3 25085984 25086143 -134513640 + (TTTC)n Simple_repeat Simple_repeat 2 160 0 1 776 4335 105 2 0 chr3 25086148 25086765 -134513018 - L1_Mus1 LINE L1 -1 6566 5949 1 776 212 171 0 0 chr3 25086778 25086819 -134512964 + T-rich Low_complexity Low_complexity 1 41 0 1 776 983 78 0 0 chr3 25086838 25086966 -134512817 - B1_Mm SINE Alu -1 146 19 1 776 407 220 51 76 chr3 25086882 25087000 -134512783 - MT2B LTR ERVL -344 257 143 1 776 13783 116 116 1 chr3 25087017 25091318 -134508465 - L1VL1 LINE L1 -2 5881 404 1 776 4476 169 24 12 chr3 25091318 25092469 -134507314 - Lx2 LINE L1 -583 6414 5214 1 776 1096 95 0 20 chr3 25092482 25092632 -134507151 - B1_Mm SINE Alu 0 147 1 1 776 14206 179 19 24 chr3 25092632 25093821 -134505962 - Lx2 LINE L1 -1540 4346 3164 1 776 288 53 0 0 chr3 25093821 25093859 -134505924 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 1 776 14206 179 21 24 chr3 25093859 25095938 -134503845 - Lx2 LINE L1 -2723 3163 1084 1 776 2766 79 0 46 chr3 25095938 25096349 -134503434 - L1Md_F2 LINE L1 0 6582 6191 1 776 3414 198 72 20 chr3 25096349 25096962 -134502821 - Lx2 LINE L1 -5551 1083 436 1 776 412 298 0 0 chr3 25096985 25097106 -134502677 - Lx2 LINE L1 -6154 480 360 1 776 3478 54 7 11 chr3 25097150 25097596 -134502187 + L1Md_F2 LINE L1 6138 6581 -1 1 776 1366 282 32 13 chr3 25098196 25098570 -134501213 - MTD LTR MaLR -19 400 20 1 776 491 0 17 0 chr3 25098735 25098794 -134500989 + (CA)n Simple_repeat Simple_repeat 2 61 0 1 776 328 346 33 14 chr3 25099021 25099235 -134500548 + HERV16-int LTR ERVL 2614 2831 -2165 1 776 429 273 82 57 chr3 25099547 25099706 -134500077 + RSINE1 SINE B4 3 165 0 1 776 286 280 80 47 chr3 25100451 25100601 -134499182 + LTR41 LTR ERVL 559 713 -55 1 776 387 0 0 0 chr3 25100745 25100788 -134498995 + (CA)n Simple_repeat Simple_repeat 1 43 0 1 776 624 350 17 0 chr3 25100855 25101035 -134498748 - B3A SINE B2 -15 183 1 1 776 25 31 0 0 chr3 25102168 25102200 -134497583 + AT_rich Low_complexity Low_complexity 1 32 0 1 776 4312 30 0 0 chr3 25102725 25103223 -134496560 + L1Md_T LINE L1 6084 6581 -1 1 776 349 274 9 0 chr3 25104699 25104812 -134494971 - L1MA4 LINE L1 -417 5883 5770 1 776 21 0 0 0 chr3 25105374 25105395 -134494388 + AT_rich Low_complexity Low_complexity 1 21 0 1 776 348 24 0 0 chr3 25106782 25106823 -134492960 + (TAA)n Simple_repeat Simple_repeat 3 43 0 1 776 302 96 0 71 chr3 25107043 25107099 -134492684 + HAL1-3A_ME LINE L1 1977 2028 -830 1 776 242 362 12 0 chr3 25107499 25107579 -134492204 + MIR SINE MIR 63 143 -119 1 776 483 312 97 97 chr3 25107584 25107964 -134491819 - MER47B DNA MER2_type 0 418 39 1 776 331 307 188 0 chr3 25108211 25108387 -134491396 + ID_B1 SINE B4 2 210 -14 1 776 183 162 0 0 chr3 25108399 25108436 -134491347 + GA-rich Low_complexity Low_complexity 3 39 0 1 776 249 83 0 0 chr3 25108506 25108542 -134491241 + (CAA)n Simple_repeat Simple_repeat 3 38 0 1 776 4528 72 31 3 chr3 25108761 25109374 -134490409 - L1Md_F2 LINE L1 0 6582 5953 1 776 2138 55 14 0 chr3 25109374 25109666 -134490117 + L1Md_F2 LINE L1 5669 5964 -618 1 776 295 315 38 45 chr3 25111653 25111786 -134487997 - MER77 LTR ERVL -414 193 62 1 776 252 312 53 28 chr3 25111978 25112102 -134487681 - PB1D10 SINE Alu -17 132 1 1 776 279 0 0 0 chr3 25112820 25112851 -134486932 + (TC)n Simple_repeat Simple_repeat 2 32 0 1 776 279 0 0 0 chr3 25112851 25112881 -134486902 + (TG)n Simple_repeat Simple_repeat 2 32 0 1 776 26 0 0 0 chr3 25113011 25113037 -134486746 + AT_rich Low_complexity Low_complexity 1 26 0 1 776 30 45 0 0 chr3 25113075 25113119 -134486664 + AT_rich Low_complexity Low_complexity 1 44 0 1 776 598 289 211 7 chr3 25113215 25113504 -134486279 - MTE2b LTR MaLR -20 359 12 1 776 414 114 0 0 chr3 25113661 25113740 -134486043 + (A)n Simple_repeat Simple_repeat 1 79 0 1 776 531 0 0 0 chr3 25114477 25114536 -134485247 + (TAA)n Simple_repeat Simple_repeat 2 60 0 1 776 248 53 0 26 chr3 25114999 25115038 -134484745 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 1 776 410 230 342 0 chr3 25115050 25115211 -134484572 - B3 SINE B2 0 216 1 1 776 252 0 0 0 chr3 25115224 25115252 -134484531 + (TTG)n Simple_repeat Simple_repeat 3 30 0 1 776 216 0 0 0 chr3 25115252 25115276 -134484507 + (TGG)n Simple_repeat Simple_repeat 2 25 0 1 776 234 128 0 0 chr3 25115596 25115635 -134484148 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 1 776 21 36 0 0 chr3 25116039 25116067 -134483716 + AT_rich Low_complexity Low_complexity 1 28 0 1 776 712 273 66 48 chr3 25116112 25116489 -134483294 + L1MA6 LINE L1 5637 6020 -280 1 776 198 0 0 0 chr3 25116722 25116744 -134483039 + (TA)n Simple_repeat Simple_repeat 2 23 0 1 776 387 0 0 0 chr3 25116880 25116923 -134482860 + (TTTTA)n Simple_repeat Simple_repeat 2 44 0 1 776 1033 86 0 41 chr3 25116923 25117068 -134482715 - B1_Mus1 SINE Alu -9 139 1 1 776 2455 189 19 15 chr3 25117293 25117815 -134481968 - RLTR28 LTR ERVL 0 524 1 1 776 300 27 0 0 chr3 25118190 25118227 -134481556 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 776 273 98 0 0 chr3 25119059 25119100 -134480683 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 776 438 127 0 0 chr3 25119123 25119194 -134480589 + (TG)n Simple_repeat Simple_repeat 2 72 0 1 776 482 308 144 42 chr3 25119203 25119675 -134480108 - L1ME3A LINE L1 -29 6144 5625 1 776 666 152 0 0 chr3 25120543 25120668 -134479115 + CT-rich Low_complexity Low_complexity 4 128 0 1 776 21 0 0 0 chr3 25121097 25121118 -134478665 + AT_rich Low_complexity Low_complexity 1 21 0 1 776 441 185 22 0 chr3 25121181 25121273 -134478510 - Lx9 LINE L1 -563 7081 6988 1 776 664 251 27 36 chr3 25121269 25121492 -134478291 + Lx9 LINE L1 7182 7402 -242 1 776 4925 160 21 31 chr3 25121501 25122566 -134477217 + L1Md_T LINE L1 152 1205 -5411 1 776 34771 32 0 0 chr3 25122572 25126988 -134472795 + L1Md_T LINE L1 1170 5585 -298 1 776 8074 53 0 0 chr3 25126990 25127985 -134471798 + L1Md_T LINE L1 5588 6582 0 1 776 251 298 0 0 chr3 25127989 25128046 -134471737 + (TATATG)n Simple_repeat Simple_repeat 5 61 0 1 776 31 82 0 0 chr3 25128116 25128189 -134471594 + AT_rich Low_complexity Low_complexity 1 73 0 1 776 243 306 14 0 chr3 25128343 25128415 -134471368 + (CA)n Simple_repeat Simple_repeat 2 74 0 1 776 356 229 12 12 chr3 25128644 25128728 -134471055 - RMER12 LTR ERVK -472 850 767 1 776 314 305 38 0 chr3 25128753 25128858 -134470925 + B3 SINE B2 108 216 0 1 776 335 306 32 8 chr3 25129330 25129455 -134470328 + L1MEf LINE L1 1485 1612 -4630 1 776 230 116 23 0 chr3 25129732 25129775 -134470008 + (GA)n Simple_repeat Simple_repeat 1 44 0 1 776 339 264 72 31 chr3 25129865 25130215 -134469568 + L1MEf LINE L1 2211 2581 -3565 1 776 5449 250 39 48 chr3 25130375 25130644 -134469139 - Lx6 LINE L1 -1 7459 7203 1 776 1217 21 14 0 chr3 25130644 25130789 -134468994 + B1_Mus2 SINE Alu 1 147 0 1 776 5449 250 39 48 chr3 25130789 25132214 -134467569 - Lx6 LINE L1 -258 7202 5780 1 776 348 222 0 0 chr3 25132211 25132283 -134467500 - RMER1C Other Other -18 1324 1253 1 776 1396 181 0 4 chr3 25132449 25132709 -134467074 - Lx6 LINE L1 -98 5782 5524 1 776 242 356 102 33 chr3 25132830 25133045 -134466738 + MLT1A0 LTR MaLR 10 239 -126 1 776 1053 228 24 0 chr3 25133045 25133256 -134466527 + URR1B DNA MER1_type 1 216 -9 1 776 591 139 0 0 chr3 25133490 25133605 -134466178 + (TC)n Simple_repeat Simple_repeat 1 115 0 1 776 911 319 58 8 chr3 25133726 25134086 -134465697 - Lx7 LINE L1 -561 7135 6758 1 776 908 192 22 34 chr3 25134106 25134284 -134465499 - ORR1B2 LTR MaLR -186 181 6 1 776 402 216 233 6 chr3 25134348 25134511 -134465272 - MER2 DNA MER2_type -114 231 32 1 776 22 56 0 0 chr3 25134694 25134730 -134465053 + AT_rich Low_complexity Low_complexity 1 36 0 1 776 7404 152 24 19 chr3 25134791 25135882 -134463901 - Lx2 LINE L1 0 6997 5909 1 776 221 30 0 57 chr3 25135882 25135917 -134463866 + (TTTG)n Simple_repeat Simple_repeat 4 36 0 1 776 12196 177 20 9 chr3 25135917 25138531 -134461252 - Lx2 LINE L1 -1089 5908 3254 1 776 661 306 75 58 chr3 25138531 25138823 -134460960 - RLTR12B LTR ERVK -200 328 32 1 776 3870 205 67 43 chr3 25138830 25139835 -134459948 - MYSERV6-int LTR ERVK -26 8933 7922 1 776 369 0 0 0 chr3 25139835 25139876 -134459907 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 776 3870 205 67 43 chr3 25139876 25140013 -134459770 - MYSERV6-int LTR ERVK -1038 7921 7765 1 776 383 266 85 40 chr3 25140015 25140191 -134459592 - RMER4A LTR ERVK -27 439 256 1 776 645 243 26 26 chr3 25140227 25140421 -134459362 - MYSERV-int LTR ERVK -1514 5036 4843 1 776 2051 283 50 26 chr3 25140527 25141366 -134458417 - MYSERV-int LTR ERVK -1752 4798 3940 1 776 284 73 0 0 chr3 25141373 25141414 -134458369 - MYSERV6-int LTR ERVK -587 4673 4633 1 776 6433 208 14 40 chr3 25141460 25141602 -134458181 - MYSERV6-int LTR ERVK -5136 3823 3691 1 776 276 53 0 0 chr3 25141609 25141647 -134458136 + (TTTTG)n Simple_repeat Simple_repeat 2 39 0 1 776 1207 41 0 0 chr3 25141647 25141784 -134457999 - B1_Mus2 SINE Alu -9 138 2 1 776 6433 208 14 40 chr3 25141784 25141954 -134457829 - MYSERV6-int LTR ERVK -5269 3690 3525 1 776 3188 43 10 2 chr3 25141954 25142347 -134457436 - MTA_Mm LTR MaLR 0 396 1 1 776 6433 208 14 40 chr3 25142347 25143214 -134456569 - MYSERV6-int LTR ERVK -5435 3524 2668 1 776 866 169 52 42 chr3 25143214 25143406 -134456377 - B2_Mm2 SINE B2 -1 194 1 1 776 6433 234 16 37 chr3 25143406 25144307 -134455476 - MYSERV6-int LTR ERVK -2041 3219 2100 1 776 387 308 73 29 chr3 25144307 25144444 -134455339 + B3A SINE B2 67 209 -7 1 776 514 326 44 69 chr3 25144512 25144716 -134455067 - ID_B1 SINE B4 -21 203 5 1 776 198 103 0 0 chr3 25145107 25145136 -134454647 + (CAT)n Simple_repeat Simple_repeat 2 30 0 1 776 207 209 0 0 chr3 25145980 25146023 -134453760 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 2 776 1617 5 0 0 chr3 25146061 25146246 -134453537 - L1Md_A LINE L1 0 6582 6398 2 776 543 209 22 36 chr3 25146275 25146414 -134453369 - RMER10B LTR ERVL -48 350 214 2 776 674 53 11 0 chr3 25146420 25146515 -134453268 + (GA)n Simple_repeat Simple_repeat 2 97 0 2 776 935 214 54 16 chr3 25146535 25146777 -134453006 - Lx5 LINE L1 -1 7049 6799 2 776 964 258 122 68 chr3 25146790 25147233 -134452550 - RMER12 LTR ERVK -301 1547 729 2 776 1062 274 77 100 chr3 25147225 25148065 -134451718 - RMER12 LTR ERVK -998 810 1 2 776 212 275 0 42 chr3 25148348 25148443 -134451340 + A-rich Low_complexity Low_complexity 5 95 0 2 776 1461 223 48 53 chr3 25148509 25148888 -134450895 - ORR1C1 LTR MaLR 0 378 2 2 776 7355 70 1 22 chr3 25148951 25149742 -134450041 + L1Md_T LINE L1 88 859 -5663 2 776 3208 30 26 39 chr3 25149742 25150158 -134449625 - IAPLTR2a LTR ERVK 0 411 1 2 776 33826 44 0 1 chr3 25150158 25154794 -134444989 + L1Md_T LINE L1 860 5589 -297 2 776 8412 36 0 0 chr3 25154794 25155790 -134443993 + L1Md_T LINE L1 5590 6585 0 2 776 268 397 27 60 chr3 25156496 25156646 -134443137 + B3A SINE B2 36 180 -18 2 776 899 251 19 11 chr3 25157173 25157551 -134442232 + L1_Mur3 LINE L1 889 1259 -6469 2 776 1634 222 39 6 chr3 25157551 25158071 -134441712 + L1_Mur3 LINE L1 1220 1756 -4124 2 776 2569 199 16 121 chr3 25158055 25158209 -134441574 + L1_Mur3 LINE L1 2217 2351 -3526 2 776 969 147 25 0 chr3 25158209 25158366 -134441417 - L1_Mus1 LINE L1 -1 6566 6406 2 776 2569 199 16 121 chr3 25158366 25159084 -134440699 + L1_Mur3 LINE L1 2352 2997 -2880 2 776 5869 98 8 11 chr3 25159089 25160041 -134439742 + MusHAL1 LINE L1 125 1074 -1638 2 776 632 106 0 42 chr3 25160041 25160159 -134439624 + Lx LINE L1 6536 6648 -6 2 776 213 65 0 0 chr3 25160213 25160244 -134439539 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 2 776 5133 214 22 49 chr3 25160244 25161733 -134438050 + L1_Mur3 LINE L1 3282 4730 -1150 2 776 227 292 63 55 chr3 25161754 25161881 -134437902 + Lx6 LINE L1 6044 6171 -1289 2 776 7443 100 27 6 chr3 25161894 25163265 -134436518 + L1Md_F LINE L1 98 1412 -4471 2 776 2271 45 11 0 chr3 25163265 25163552 -134436231 + RLTR10-int LTR ERVK 703 992 -995 2 776 415 311 21 17 chr3 25163692 25163931 -134435852 + IAP-d-int LTR ERVK 822 1061 -5481 2 776 343 140 0 0 chr3 25163988 25164045 -134435738 + RLTR10-int LTR ERVK 447 503 -6039 2 776 7798 40 6 7 chr3 25164028 25165028 -134434755 + RLTR10-int LTR ERVK 988 1986 -1 2 776 2670 83 2 79 chr3 25165028 25165448 -134434335 + RLTR10 LTR ERVK 1 388 -2 2 777 8517 76 3 8 chr3 25165999 25167212 -134432571 + L1Md_F2 LINE L1 4380 5586 -297 2 777 7632 68 2 4 chr3 25167212 25168204 -134431579 + L1Md_F2 LINE L1 5587 6576 -6 2 777 586 275 0 7 chr3 25168206 25168356 -134431427 + Lx6 LINE L1 6215 6363 -687 2 777 1026 309 62 61 chr3 25168362 25168937 -134430846 + Lx6 LINE L1 6488 7434 -26 2 777 788 57 9 0 chr3 25169125 25169231 -134430552 + (TTTC)n Simple_repeat Simple_repeat 2 108 0 2 777 2019 262 146 80 chr3 25169606 25170843 -134428940 + RMER12 LTR ERVK 4 1322 0 2 777 389 302 50 0 chr3 25170845 25170931 -134428852 - Lx5 LINE L1 -324 6726 6641 2 777 441 0 0 0 chr3 25170931 25170980 -134428803 + (TG)n Simple_repeat Simple_repeat 2 50 0 2 777 389 302 50 0 chr3 25170980 25171012 -134428771 - Lx5 LINE L1 -410 6640 6603 2 777 1147 61 0 7 chr3 25171047 25171195 -134428588 - B2_Mm2 SINE B2 -43 152 6 2 777 384 218 0 10 chr3 25171195 25171297 -134428486 - L1_Mur3 LINE L1 -622 5258 5158 2 777 497 357 6 77 chr3 25171523 25171627 -134428156 + RSINE1 SINE B4 8 109 -56 2 777 2254 198 91 64 chr3 25171627 25172298 -134427485 - RMER6C LTR ERVK -1 689 1 2 777 497 357 6 77 chr3 25172298 25172363 -134427420 + RSINE1 SINE B4 110 165 0 2 777 243 0 0 0 chr3 25172903 25172930 -134426853 + (A)n Simple_repeat Simple_repeat 1 27 0 2 777 652 281 18 98 chr3 25173494 25173881 -134425902 + L1_Mur3 LINE L1 4614 4969 -911 2 777 1875 136 86 109 chr3 25174871 25175357 -134424426 + IAPLTR2_Mm LTR ERVK 1 475 0 2 777 907 123 94 0 chr3 25175358 25175529 -134424254 + IAPEz-int LTR ERVK 9 195 -6286 2 777 252 283 0 0 chr3 25175529 25175582 -134424201 + RLTR27 LTR ERVK 223 275 -34 2 777 3241 97 18 38 chr3 25175582 25176236 -134423547 + IAPEz-int LTR ERVK 168 662 -5819 2 777 2475 82 0 3 chr3 25176236 25176579 -134423204 + IAPEz-int LTR ERVK 1359 1700 -4781 2 777 5877 72 12 8 chr3 25176574 25177400 -134422383 + IAPEz-int LTR ERVK 5653 6481 0 2 777 1773 122 75 181 chr3 25177400 25177931 -134421852 + IAPLTR2_Mm LTR ERVK 1 475 0 2 777 319 243 28 18 chr3 25178111 25178220 -134421563 + RMER16-int LTR ERVK 3231 3340 -2066 2 777 218 81 27 0 chr3 25179709 25179746 -134420037 + (TTCA)n Simple_repeat Simple_repeat 3 40 0 2 777 1969 136 52 0 chr3 25179967 25180275 -134419508 - ORR1A3 LTR MaLR -2 324 1 2 777 783 287 34 10 chr3 25180282 25180486 -134419297 - B3 SINE B2 -6 210 2 2 777 5199 157 70 10 chr3 25181358 25182479 -134417304 - MYSERV16_I-int LTR ERVK -71 2255 1067 2 777 1218 195 31 86 chr3 25182460 25182785 -134416998 - MYSERV16_I-int LTR ERVK -1364 962 656 2 777 2270 186 11 7 chr3 25182793 25183280 -134416503 - MYSERV16_I-int LTR ERVK -1840 486 5 2 777 282 209 0 110 chr3 25183339 25183457 -134416326 - RMER3D-int LTR ERVK -1626 1216 1112 2 777 324 0 0 0 chr3 25184493 25184529 -134415254 + (TTTTTG)n Simple_repeat Simple_repeat 3 38 0 2 777 1273 240 137 32 chr3 25184597 25185111 -134414672 - RLTR20B3 LTR ERVK 0 541 1 2 777 293 0 27 0 chr3 25186428 25186465 -134413318 + (TTG)n Simple_repeat Simple_repeat 2 39 0 2 777 14508 59 7 1 chr3 25186518 25189171 -134410612 - L1Md_F2 LINE L1 -12 6570 3904 2 777 36782 5 0 0 chr3 25189170 25194221 -134405562 + L1Md_A LINE L1 535 5586 -297 2 777 9078 2 0 0 chr3 25194221 25195217 -134404566 + L1Md_A LINE L1 5587 6582 0 2 777 1960 70 0 0 chr3 25195223 25195496 -134404287 - L1Md_F2 LINE L1 -1967 3916 3644 2 777 1752 154 67 15 chr3 25195843 25196326 -134403457 - RLTR12A LTR ERVK -16 552 1 2 777 305 43 0 42 chr3 25197975 25198023 -134401760 + (TCTCTG)n Simple_repeat Simple_repeat 3 48 0 2 777 294 29 0 0 chr3 25198033 25198068 -134401715 + (TATG)n Simple_repeat Simple_repeat 4 38 0 2 777 1010 340 50 11 chr3 25198225 25198784 -134400999 + L1_Mur3 LINE L1 59 639 -7089 2 777 1053 227 52 100 chr3 25198838 25199062 -134400721 + L1_Mur3 LINE L1 815 1005 -6723 2 777 4369 51 4 16 chr3 25199062 25199624 -134400159 + L1Md_F3 LINE L1 6016 6570 -14 2 777 2419 223 58 24 chr3 25199624 25200569 -134399214 + L1_Mur3 LINE L1 939 1938 -3942 2 777 21 82 0 0 chr3 25200632 25200681 -134399102 + AT_rich Low_complexity Low_complexity 1 49 0 2 777 1582 321 62 72 chr3 25201062 25201272 -134398511 - Lx LINE L1 -3 7047 6824 2 777 3107 63 0 10 chr3 25201272 25201672 -134398111 + MTA_Mm LTR MaLR 1 396 0 2 777 7924 174 25 7 chr3 25201672 25204185 -134395598 - Lx LINE L1 -227 6823 4318 2 777 3235 103 0 7 chr3 25204179 25204777 -134395006 - MusHAL1 LINE L1 -2172 1181 589 2 777 37434 28 1 6 chr3 25204792 25210829 -134388954 - L1Md_A LINE L1 -2 6580 586 2 777 2288 204 64 42 chr3 25210829 25211442 -134388341 - L1VL4 LINE L1 -5495 807 182 2 777 15877 158 26 42 chr3 25211437 25215381 -134384402 - Lx5 LINE L1 -446 6604 2708 2 777 894 228 0 0 chr3 25215385 25215569 -134384214 - Lx5 LINE L1 -6111 975 792 2 777 394 219 218 7 chr3 25215542 25215689 -134384094 - Lx5 LINE L1 -6446 640 463 2 777 459 286 18 6 chr3 25215688 25215853 -134383930 + L1_Mur2 LINE L1 524 690 -6396 2 777 2125 302 30 54 chr3 25215860 25217066 -134382717 + MYSERV-int LTR ERVK 3981 5157 -1393 2 777 711 156 11 57 chr3 25217084 25217261 -134382522 + MYSERV6-int LTR ERVK 7823 7991 -968 2 777 527 233 3 0 chr3 25217277 25217416 -134382367 + L1_Mur2 LINE L1 2993 3132 -2745 2 777 1172 196 13 66 chr3 25217409 25217710 -134382073 + L1_Mur2 LINE L1 3354 3638 -2242 2 777 1308 237 41 3 chr3 25217710 25218049 -134381734 + Lx7 LINE L1 6842 7193 -503 2 777 3119 131 19 14 chr3 25218053 25218571 -134381212 + RLTR1C LTR ERV1 1 506 -1 2 777 793 150 45 7 chr3 25218571 25218725 -134381058 + MMERGLN-int LTR ERV1 16 175 -7381 2 777 250 132 0 0 chr3 25218725 25218763 -134381020 + MMERGLN-int LTR ERV1 103 140 -3159 2 777 584 242 56 0 chr3 25218781 25218942 -134380841 + Lx7 LINE L1 7198 7367 -329 2 777 456 19 0 0 chr3 25218976 25219029 -134380754 + (TC)n Simple_repeat Simple_repeat 2 54 0 2 777 683 291 12 6 chr3 25219389 25219555 -134380228 - B3A SINE B2 -30 168 2 2 777 182 37 37 0 chr3 25219690 25219717 -134380066 + (TTTA)n Simple_repeat Simple_repeat 4 31 0 2 777 1644 197 55 31 chr3 25220360 25220743 -134379040 + RLTR11A LTR ERVK 7 398 -130 2 777 550 165 12 31 chr3 25220743 25220906 -134378877 + GA-rich Low_complexity Low_complexity 1 160 0 2 777 387 371 62 0 chr3 25221516 25221772 -134378011 + MamGyp-int LTR Gypsy 2067 2338 -2724 2 777 240 366 44 52 chr3 25222277 25222548 -134377235 + MLT1B LTR MaLR 67 335 -55 2 777 384 324 113 36 chr3 25222832 25223053 -134376730 + MLT1A0 LTR MaLR 125 362 -3 2 777 459 0 0 0 chr3 25223084 25223135 -134376648 + (TA)n Simple_repeat Simple_repeat 2 52 0 2 777 471 204 11 11 chr3 25223145 25223239 -134376544 - MTE2a LTR MaLR -6 373 280 2 777 3743 70 74 0 chr3 25223263 25223792 -134375991 + L1_Mus4 LINE L1 6069 6636 0 2 777 628 246 128 0 chr3 25223863 25224058 -134375725 - L1_Mur3 LINE L1 -7379 333 114 2 777 405 297 83 52 chr3 25225621 25225813 -134373970 + MT2A LTR ERVL 228 425 -108 2 777 2596 143 56 31 chr3 25225832 25226316 -134373467 + RLTR19A LTR ERVK 1 496 0 2 777 212 79 0 73 chr3 25226402 25226443 -134373340 + T-rich Low_complexity Low_complexity 2 39 0 2 777 794 143 7 54 chr3 25226624 25226772 -134373011 - B1_Mus2 SINE Alu -6 141 1 2 777 264 252 56 9 chr3 25227203 25227311 -134372472 - Lx9 LINE L1 0 7644 7532 2 777 180 0 0 0 chr3 25227343 25227363 -134372420 + (CTTTG)n Simple_repeat Simple_repeat 2 21 0 2 777 510 61 0 0 chr3 25227371 25227437 -134372346 + (TTCC)n Simple_repeat Simple_repeat 4 69 0 2 777 5054 43 5 2 chr3 25227462 25228084 -134371699 - L1Md_F2 LINE L1 -3 6579 5956 2 777 563 298 94 27 chr3 25228381 25228860 -134370923 - L1_Rod LINE L1 -620 5671 5097 2 777 335 303 114 43 chr3 25228853 25229177 -134370606 + L1M2 LINE L1 4290 4636 -1507 2 777 948 334 23 46 chr3 25229247 25229727 -134370056 - Lx9 LINE L1 -275 7369 6901 2 777 952 304 88 20 chr3 25229728 25230071 -134369712 - Lx9 LINE L1 -872 6772 6407 2 777 525 32 0 0 chr3 25230108 25230171 -134369612 + (TA)n Simple_repeat Simple_repeat 1 63 0 2 777 955 269 95 22 chr3 25230426 25230890 -134368893 - Lx9 LINE L1 -1683 5961 5429 2 777 514 181 47 9 chr3 25230891 25230997 -134368786 + RMER6C LTR ERVK 1 110 -580 2 777 309 243 14 0 chr3 25230986 25231056 -134368727 + MT2B LTR ERVL 185 255 -346 2 777 898 283 80 23 chr3 25231061 25231488 -134368295 - L1_Mur3 LINE L1 -1767 4113 3663 2 777 240 35 0 0 chr3 25231488 25231517 -134368266 + (TG)n Simple_repeat Simple_repeat 1 29 0 2 777 605 71 20 0 chr3 25231523 25231622 -134368161 + (TAGA)n Simple_repeat Simple_repeat 4 104 0 2 777 4163 114 23 0 chr3 25231732 25232348 -134367435 - Lx3_Mus LINE L1 -8 7001 6372 2 777 2477 79 12 3 chr3 25232348 25232692 -134367091 - L1_Mur1 LINE L1 -846 5040 4694 2 777 4918 81 0 20 chr3 25232693 25233427 -134366356 - L1_Mur1 LINE L1 -1815 4071 3353 2 777 446 233 16 16 chr3 25233438 25233560 -134366223 - L1_Mur1 LINE L1 -6860 122 1 2 777 2678 239 51 30 chr3 25233599 25234611 -134365172 - L1_Rod LINE L1 -2276 3571 2538 2 777 243 356 45 5 chr3 25235146 25235366 -134364417 + L1MC3 LINE L1 5694 5922 -1863 2 777 303 28 0 0 chr3 25236125 25236161 -134363622 + (TTA)n Simple_repeat Simple_repeat 1 36 0 2 777 1019 77 21 0 chr3 25236162 25236305 -134363478 - B1_Mm SINE Alu 0 147 2 2 777 580 158 122 0 chr3 25236310 25236449 -134363334 - Lx9 LINE L1 -2 7642 7487 2 777 2661 214 21 11 chr3 25236477 25237035 -134362748 - Lx9 LINE L1 -674 6970 6407 2 777 1051 91 0 7 chr3 25237238 25237382 -134362401 - B1_Mus1 SINE Alu 0 148 6 3 777 186 43 0 0 chr3 25238157 25238180 -134361603 + (CAAA)n Simple_repeat Simple_repeat 3 25 0 3 777 21 0 0 0 chr3 25239118 25239139 -134360644 + AT_rich Low_complexity Low_complexity 1 21 0 3 777 412 353 31 79 chr3 25239175 25239499 -134360284 - B4A SINE B4 -15 277 3 3 777 2755 131 9 13 chr3 25239578 25240026 -134359757 - Lx3_Mus LINE L1 0 7009 6564 3 777 204 200 0 0 chr3 25240026 25240061 -134359722 + polypyrimidine Low_complexity Low_complexity 3 37 0 3 777 6482 192 32 7 chr3 25240077 25241733 -134358050 - Lx3C LINE L1 -2 6974 5277 3 777 185 0 40 0 chr3 25241733 25241758 -134358025 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 3 777 3917 170 22 9 chr3 25241758 25241903 -134357880 - Lx3C LINE L1 -610 5276 5131 3 777 34304 33 0 0 chr3 25241908 25246706 -134353077 - L1Md_T LINE L1 0 6582 1783 3 777 1437 189 4 0 chr3 25246699 25246963 -134352820 - Lx3C LINE L1 -734 5152 4888 3 777 10816 192 36 19 chr3 25246963 25249787 -134349996 - Lx3C LINE L1 -2199 3687 804 3 777 8307 32 7 0 chr3 25250343 25251316 -134348467 + L1Md_F2 LINE L1 5588 6567 -15 3 777 23 54 0 0 chr3 25251316 25251353 -134348430 + AT_rich Low_complexity Low_complexity 1 37 0 3 777 215 125 25 0 chr3 25251463 25251503 -134348280 + (TTTC)n Simple_repeat Simple_repeat 2 42 0 3 777 759 158 0 0 chr3 25253450 25253570 -134346213 + MTC LTR MaLR 1 120 -301 3 777 279 0 0 0 chr3 25253570 25253601 -134346182 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 3 777 7488 78 0 6 chr3 25253605 25254251 -134345532 - L1_Mus1 LINE L1 -2 6565 5925 3 777 2832 58 0 0 chr3 25254251 25254597 -134345186 - ORR1A0 LTR MaLR 0 346 1 3 777 7488 87 0 8 chr3 25254597 25255326 -134344457 - L1_Mus1 LINE L1 -643 5924 5202 3 777 1553 182 61 7 chr3 25255327 25255620 -134344163 + MTC LTR MaLR 111 419 -2 3 777 308 330 103 79 chr3 25255670 25255923 -134343860 - MTE2a LTR MaLR -2 377 119 3 777 384 277 132 25 chr3 25255918 25256077 -134343706 + RMER15 LTR ERVL 254 429 -146 3 777 235 275 43 38 chr3 25256369 25256554 -134343229 - RLTR21 LTR ERVK -318 1254 1069 3 777 562 375 120 8 chr3 25257539 25257789 -134341994 - B4 SINE B4 0 292 15 3 777 402 85 0 0 chr3 25257816 25257875 -134341908 + (CA)n Simple_repeat Simple_repeat 2 60 0 3 777 892 238 185 131 chr3 25257875 25258296 -134341487 - MT2A LTR ERVL -89 444 1 3 777 301 262 122 8 chr3 25258297 25258420 -134341363 + RMER15-int LTR ERVL 4226 4362 -637 3 777 302 214 38 19 chr3 25258438 25258543 -134341240 + (TA)n Simple_repeat Simple_repeat 2 108 0 3 777 22 80 0 0 chr3 25260416 25260466 -134339317 + AT_rich Low_complexity Low_complexity 1 50 0 3 777 363 303 157 6 chr3 25260598 25260764 -134339019 + RMER30 DNA MER1_type 1 191 -11 3 777 193 75 50 0 chr3 25262130 25262170 -134337613 + (CA)n Simple_repeat Simple_repeat 1 42 0 3 777 283 374 8 25 chr3 25263696 25263814 -134335969 - ID_B1 SINE B4 -25 199 84 3 777 23 33 0 0 chr3 25263940 25263970 -134335813 + AT_rich Low_complexity Low_complexity 1 30 0 3 777 311 180 31 39 chr3 25264859 25264986 -134334797 + RMER17A LTR ERVK 335 460 -291 3 777 468 0 0 0 chr3 25265298 25265350 -134334433 + (GA)n Simple_repeat Simple_repeat 1 52 0 3 777 316 0 22 22 chr3 25265686 25265731 -134334052 + (TTTG)n Simple_repeat Simple_repeat 2 46 0 3 777 282 350 148 33 chr3 25265936 25266119 -134333664 + MER77 LTR ERVL 350 553 -54 3 777 1594 201 58 0 chr3 25266260 25266568 -134333215 + ORR1A3 LTR MaLR 1 326 0 3 777 3014 168 24 13 chr3 25266568 25267122 -134332661 + ORR1A3-int LTR MaLR 1 560 -1403 3 777 783 173 0 13 chr3 25267140 25267298 -134332485 + Lx4A LINE L1 4344 4499 -1378 3 777 3867 174 29 19 chr3 25267300 25268453 -134331330 + Lx4A LINE L1 5149 6316 -742 3 777 3613 171 32 5 chr3 25268452 25269074 -134330709 + Lx4A LINE L1 6420 7058 0 3 777 255 290 86 0 chr3 25269272 25269365 -134330418 + BC1_Mm scRNA scRNA 2 102 -50 3 777 528 299 40 136 chr3 25269659 25269887 -134329896 - MTEb LTR MaLR -133 246 41 3 777 250 219 31 15 chr3 25269944 25270009 -134329774 + MLT1C LTR MaLR 59 124 -343 3 777 863 273 164 25 chr3 25270026 25270169 -134329614 - MTE2b LTR MaLR -8 371 216 3 777 2042 72 7 46 chr3 25270169 25270476 -134329307 + L1_Mus2 LINE L1 6272 6566 0 3 777 863 273 164 25 chr3 25270476 25270655 -134329128 - MTE2b LTR MaLR -164 215 6 3 777 3193 43 8 2 chr3 25270655 25271049 -134328734 + MTA_Mm LTR MaLR 1 396 0 3 777 373 265 0 0 chr3 25271425 25271508 -134328275 - MTEb LTR MaLR -296 83 1 3 777 447 171 9 19 chr3 25272884 25272991 -134326792 + (TA)n Simple_repeat Simple_repeat 2 107 0 3 777 251 122 20 0 chr3 25272997 25273046 -134326737 + (CA)n Simple_repeat Simple_repeat 1 50 0 3 777 222 61 0 58 chr3 25273682 25273734 -134326049 + (CAAAAA)n Simple_repeat Simple_repeat 2 50 0 3 777 2267 216 21 94 chr3 25274165 25274824 -134324959 + RMER19C LTR ERVK 1 611 0 3 777 22 56 0 0 chr3 25275112 25275148 -134324635 + AT_rich Low_complexity Low_complexity 1 36 0 3 777 294 194 0 14 chr3 25275176 25275249 -134324534 - Lx9 LINE L1 0 7644 7573 3 777 486 223 31 0 chr3 25275252 25275382 -134324401 - Lx9 LINE L1 -33 7611 7478 3 777 2433 231 66 57 chr3 25275438 25276154 -134323629 - Lx9 LINE L1 -162 7482 6761 3 777 254 345 8 66 chr3 25276155 25276276 -134323507 - PB1D10 SINE Alu -3 114 1 3 777 1201 284 45 11 chr3 25276466 25276819 -134322964 + MTEb LTR MaLR 15 379 0 3 777 327 222 0 0 chr3 25276819 25276900 -134322883 + (CA)n Simple_repeat Simple_repeat 2 82 0 3 777 25 75 0 0 chr3 25277353 25277406 -134322377 + AT_rich Low_complexity Low_complexity 1 53 0 3 777 584 242 149 11 chr3 25277579 25277767 -134322016 + B3 SINE B2 2 215 -1 3 777 724 261 109 10 chr3 25277891 25278193 -134321590 - Lx9 LINE L1 0 7644 7313 3 777 318 342 34 0 chr3 25278672 25278789 -134320994 - MLT1K LTR MaLR -10 585 465 3 777 327 49 0 0 chr3 25279069 25279110 -134320673 + (TG)n Simple_repeat Simple_repeat 1 41 0 3 777 1348 180 16 0 chr3 25280617 25280862 -134318921 - Lx9 LINE L1 -429 7215 6967 3 777 303 225 68 59 chr3 25280968 25281086 -134318697 - L1_Rod LINE L1 -1410 4437 4319 3 777 335 264 11 33 chr3 25281944 25282034 -134317749 - PB1D10 SINE Alu -1 116 29 3 777 339 339 74 102 chr3 25282486 25282877 -134316906 + MLT1A1 LTR MaLR 21 400 -8 3 777 330 392 27 5 chr3 25283003 25283190 -134316593 + ORR1E LTR MaLR 1 191 -168 3 777 42 20 0 0 chr3 25283405 25283454 -134316329 + AT_rich Low_complexity Low_complexity 1 49 0 3 777 870 258 59 65 chr3 25283504 25283988 -134315795 + L1_Mur3 LINE L1 2669 3148 -2732 3 777 396 0 0 0 chr3 25283988 25284032 -134315751 + (GA)n Simple_repeat Simple_repeat 2 45 0 3 777 870 258 59 65 chr3 25284032 25284074 -134315709 + L1_Mur3 LINE L1 3149 3192 -2688 3 777 370 310 91 8 chr3 25284070 25284311 -134315472 + L1M2 LINE L1 3508 3768 -2375 3 777 197 318 35 92 chr3 25284491 25284633 -134315150 + L2a LINE L2 3293 3426 0 3 777 1655 176 79 9 chr3 25284956 25285272 -134314511 + Lx4B LINE L1 6717 7054 -4 3 777 295 320 0 115 chr3 25286011 25286124 -134313659 - RSINE1 SINE B4 -1 164 65 3 777 342 378 46 27 chr3 25286467 25286728 -134313055 - MLT1E LTR MaLR -47 633 368 3 777 643 210 6 6 chr3 25286733 25286910 -134312873 + CT-rich Low_complexity Low_complexity 3 179 0 3 777 204 40 0 0 chr3 25286913 25286938 -134312845 + (TCCCC)n Simple_repeat Simple_repeat 1 25 0 3 777 974 287 95 66 chr3 25286989 25287474 -134312309 - RLTR20B3 LTR ERVK -56 521 23 3 777 495 48 0 0 chr3 25287480 25287542 -134312241 + (TG)n Simple_repeat Simple_repeat 2 63 0 3 777 462 18 0 0 chr3 25287931 25287986 -134311797 + (TG)n Simple_repeat Simple_repeat 2 56 0 3 777 700 371 31 8 chr3 25287988 25288249 -134311534 - B4A SINE B4 -23 269 3 3 777 232 156 25 38 chr3 25288558 25288638 -134311145 + T-rich Low_complexity Low_complexity 2 80 0 3 777 246 32 0 0 chr3 25288894 25288925 -134310858 + (TTG)n Simple_repeat Simple_repeat 3 33 0 3 777 520 332 94 18 chr3 25289907 25290131 -134309652 + MIRb SINE MIR 23 263 -5 3 777 302 0 26 0 chr3 25291130 25291168 -134308615 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 3 777 850 370 70 28 chr3 25291208 25291819 -134307964 - Lx8 LINE L1 -183 7290 6646 3 777 1393 146 66 22 chr3 25291819 25292092 -134307691 - Lx3B LINE L1 -6 6967 6683 3 777 850 370 70 28 chr3 25292092 25292233 -134307550 - Lx8 LINE L1 -828 6645 6507 3 777 2462 137 7 28 chr3 25292248 25292683 -134307100 - Lx2B LINE L1 -2 6998 6573 3 777 1820 183 31 54 chr3 25292685 25293234 -134306549 - RLTR26 LTR ERVK 0 642 1 3 777 2088 199 0 0 chr3 25293241 25293617 -134306166 - Lx2B LINE L1 -432 6568 6193 3 777 2276 171 24 5 chr3 25293616 25294033 -134305750 + Lx2 LINE L1 5770 6194 -803 3 777 804 329 21 14 chr3 25294026 25294316 -134305467 - Lx8 LINE L1 -955 6518 6227 3 777 315 0 0 0 chr3 25294896 25294931 -134304852 + (TG)n Simple_repeat Simple_repeat 2 36 0 3 777 472 285 37 37 chr3 25295439 25295683 -134304100 - RLTR15 LTR ERVK -68 291 48 3 777 520 148 19 0 chr3 25296475 25296583 -134303200 + CT-rich Low_complexity Low_complexity 1 110 0 3 777 274 189 53 59 chr3 25296590 25296742 -134303041 + A-rich Low_complexity Low_complexity 2 152 0 3 97 1703 307 48 84 chr3 25296779 25297007 -134302776 - Lx7 LINE L1 -459 7237 7016 3 778 5078 127 89 9 chr3 25297007 25297382 -134302401 + RMER17B LTR ERVK 1 399 -559 3 778 717 12 0 0 chr3 25297382 25297464 -134302319 + (TC)n Simple_repeat Simple_repeat 2 83 0 3 778 5078 127 89 9 chr3 25297464 25297975 -134301808 + RMER17B LTR ERVK 400 957 -1 3 778 1703 307 48 84 chr3 25297975 25298328 -134301455 - Lx7 LINE L1 -681 7015 6642 3 778 1294 100 5 10 chr3 25298328 25298530 -134301253 - Lx LINE L1 -6 6648 6448 3 778 1703 307 48 84 chr3 25298530 25298732 -134301051 - Lx7 LINE L1 -1055 6641 6481 3 778 369 58 0 0 chr3 25298767 25298819 -134300964 + (T)n Simple_repeat Simple_repeat 1 52 0 3 778 27 62 0 0 chr3 25299763 25299811 -134299972 + AT_rich Low_complexity Low_complexity 1 48 0 3 778 618 264 26 67 chr3 25300120 25300315 -134299468 - B3A SINE B2 -1 197 11 3 778 4974 151 49 3 chr3 25300669 25301534 -134298249 - Lx2 LINE L1 -3 6994 6091 3 778 967 341 57 30 chr3 25301651 25302192 -134297591 - Lx9 LINE L1 -223 7421 6866 3 778 21 36 0 0 chr3 25302376 25302404 -134297379 + AT_rich Low_complexity Low_complexity 1 28 0 3 778 21 0 0 0 chr3 25302471 25302492 -134297291 + AT_rich Low_complexity Low_complexity 1 21 0 3 778 286 419 48 55 chr3 25303244 25303641 -134296142 + LTR33A LTR ERVL 116 509 -11 3 778 274 284 124 1 chr3 25304483 25304592 -134295191 - PB1 SINE Alu -2 125 4 4 778 524 341 40 85 chr3 25305896 25306018 -134293765 - ID_B1 SINE B4 -9 215 104 4 778 1570 37 0 5 chr3 25306018 25306209 -134293574 + B2_Mm1a SINE B2 3 192 -1 4 778 524 341 40 85 chr3 25306209 25306310 -134293473 - ID_B1 SINE B4 -121 103 2 4 778 302 355 84 53 chr3 25306316 25306506 -134293277 + MLT1A1 LTR MaLR 213 408 0 4 778 901 288 77 49 chr3 25306710 25307075 -134292708 - Lx9 LINE L1 -453 7191 6817 4 778 390 42 0 0 chr3 25308196 25308244 -134291539 + (CA)n Simple_repeat Simple_repeat 1 48 0 4 778 26 30 0 0 chr3 25308244 25308277 -134291506 + AT_rich Low_complexity Low_complexity 1 33 0 4 778 513 214 14 97 chr3 25309077 25309222 -134290561 + ORR1C1 LTR MaLR 11 143 -224 4 778 2415 43 3 26 chr3 25309222 25309534 -134290249 + L1_Mus1 LINE L1 6263 6567 0 4 778 686 195 16 87 chr3 25309610 25309795 -134289988 + ORR1C1 LTR MaLR 143 314 -64 4 778 7041 29 2 5 chr3 25310012 25310836 -134288947 + RLTR13B2 LTR ERVK 1 822 0 4 778 3717 236 60 42 chr3 25311483 25312737 -134287046 - L1_Rod LINE L1 -3128 2719 1444 4 778 4578 182 140 2 chr3 25312773 25312913 -134286870 + RLTR25A LTR ERVK 1 141 -962 4 778 1193 61 0 0 chr3 25312913 25313060 -134286723 - B1_Mm SINE Alu 0 147 1 4 778 4578 182 140 2 chr3 25313060 25313888 -134285895 + RLTR25A LTR ERVK 142 1102 -1 4 778 3684 53 14 34 chr3 25313984 25314490 -134285293 + LTRIS2 LTR ERV1 69 564 0 4 778 1517 265 47 58 chr3 25314493 25315049 -134284734 - L1_Rod LINE L1 -6293 1315 766 4 778 392 259 147 66 chr3 25315267 25315553 -134284230 + L1MA6 LINE L1 5948 6256 -44 4 778 257 214 71 0 chr3 25315634 25315690 -134284093 + MTEb LTR MaLR 3 62 -317 4 778 2852 55 0 11 chr3 25315769 25316140 -134283643 + IAPLTR1_Mm LTR ERVK 1 367 0 4 778 25326 25 27 10 chr3 25316140 25319156 -134280627 + IAPEz-int LTR ERVK 8 3076 -3405 4 778 7215 31 2 7 chr3 25319142 25319998 -134279785 + IAPEz-int LTR ERVK 5630 6481 0 4 778 2843 57 0 11 chr3 25319998 25320369 -134279414 + IAPLTR1_Mm LTR ERVK 1 367 0 4 778 340 251 171 43 chr3 25320376 25320581 -134279202 + MTEb LTR MaLR 109 341 -38 4 778 372 314 109 23 chr3 25320759 25321034 -134278749 + L1M5 LINE L1 5274 5571 -2311 4 778 219 69 0 0 chr3 25321330 25321359 -134278424 + (TTG)n Simple_repeat Simple_repeat 2 30 0 4 778 198 103 0 0 chr3 25321949 25321978 -134277805 + (TTG)n Simple_repeat Simple_repeat 2 30 0 4 778 303 247 0 45 chr3 25322588 25322677 -134277106 + CT-rich Low_complexity Low_complexity 4 88 0 4 778 333 283 98 30 chr3 25322981 25323145 -134276638 - L1M5 LINE L1 -1041 5105 4931 4 778 224 271 0 20 chr3 25323484 25323533 -134276250 - ID_B1 SINE B4 -95 129 82 4 778 206 162 0 26 chr3 25323607 25323645 -134276138 + CT-rich Low_complexity Low_complexity 2 38 0 4 778 234 196 20 0 chr3 25323769 25323820 -134275963 + PB1D9 SINE Alu 48 99 -21 4 778 207 0 0 0 chr3 25324566 25324589 -134275194 + (GTTTG)n Simple_repeat Simple_repeat 2 24 0 4 778 411 21 0 0 chr3 25324592 25324640 -134275143 + (TG)n Simple_repeat Simple_repeat 1 48 0 4 778 306 0 0 0 chr3 25324645 25324679 -134275104 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 4 778 191 116 0 44 chr3 25325102 25325147 -134274636 + T-rich Low_complexity Low_complexity 2 44 0 4 778 24 53 0 0 chr3 25326479 25326517 -134273266 + AT_rich Low_complexity Low_complexity 1 38 0 4 778 874 173 192 16 chr3 25326566 25326748 -134273035 + B3 SINE B2 1 214 -2 4 778 212 0 0 35 chr3 25327119 25327148 -134272635 + (CAAAAA)n Simple_repeat Simple_repeat 2 29 0 4 778 21 0 0 0 chr3 25327378 25327399 -134272384 + AT_rich Low_complexity Low_complexity 1 21 0 4 778 438 271 98 30 chr3 25327770 25327903 -134271880 - B1_Mm SINE Alu -5 142 1 4 778 225 0 0 0 chr3 25328029 25328054 -134271729 + (T)n Simple_repeat Simple_repeat 1 25 0 4 778 261 0 0 0 chr3 25330644 25330673 -134269110 + (A)n Simple_repeat Simple_repeat 1 29 0 4 778 212 158 0 0 chr3 25330691 25330729 -134269054 + T-rich Low_complexity Low_complexity 2 39 0 4 778 260 70 23 0 chr3 25332171 25332214 -134267569 + (TTTTTG)n Simple_repeat Simple_repeat 2 45 0 4 778 1101 59 0 0 chr3 25333493 25333628 -134266155 + B1_Mus1 SINE Alu 2 136 -12 4 778 293 0 0 26 chr3 25333631 25333669 -134266114 + (CAAAA)n Simple_repeat Simple_repeat 2 38 0 4 778 367 347 13 46 chr3 25333865 25334016 -134265767 + RSINE1 SINE B4 16 161 -4 4 778 219 207 52 0 chr3 25334028 25334086 -134265697 + (CA)n Simple_repeat Simple_repeat 1 61 0 4 778 22 0 0 0 chr3 25336486 25336508 -134263275 + AT_rich Low_complexity Low_complexity 1 22 0 4 778 353 316 36 84 chr3 25337704 25337870 -134261913 + B3A SINE B2 25 182 -16 4 778 4483 71 20 3 chr3 25339335 25339928 -134259855 + L1Md_F2 LINE L1 5980 6582 0 4 778 248 281 0 17 chr3 25340336 25340394 -134259389 + B1_Mm SINE Alu 55 111 -36 4 778 203 88 0 29 chr3 25341449 25341484 -134258299 + (CCCCCT)n Simple_repeat Simple_repeat 5 38 0 4 778 333 283 49 16 chr3 25341504 25341626 -134258157 - MTD LTR MaLR -293 126 1 4 778 421 310 70 23 chr3 25341630 25341978 -134257805 + L1M3 LINE L1 5350 5728 -461 4 778 1278 257 55 63 chr3 25342542 25343053 -134256730 + RLTR40 LTR ERVK 188 694 -123 4 778 674 347 42 44 chr3 25343223 25343702 -134256081 + Lx7 LINE L1 6774 7262 -211 4 778 306 321 78 30 chr3 25344159 25344326 -134255457 - L1MC4 LINE L1 -428 7614 7440 4 778 23 0 0 0 chr3 25344555 25344578 -134255205 + AT_rich Low_complexity Low_complexity 1 23 0 4 778 863 255 77 80 chr3 25344831 25345169 -134254614 + ORR1E LTR MaLR 4 348 -31 4 778 851 307 26 17 chr3 25346796 25347028 -134252755 - B4A SINE B4 -9 283 50 4 778 910 319 73 25 chr3 25347550 25347987 -134251796 + Lx8 LINE L1 7014 7471 -2 4 778 231 88 0 0 chr3 25348783 25348817 -134250966 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 4 778 2587 82 45 25 chr3 25349510 25349911 -134249872 + RLTR9E LTR ERVK 1 409 0 4 778 209 33 33 0 chr3 25350451 25350481 -134249302 + (TTTTG)n Simple_repeat Simple_repeat 5 35 0 4 778 228 336 77 101 chr3 25350517 25350815 -134248968 + B4A SINE B4 2 292 0 4 778 243 201 25 31 chr3 25350829 25350988 -134248795 + (CA)n Simple_repeat Simple_repeat 1 158 0 4 778 253 275 26 60 chr3 25351031 25351147 -134248636 - MIRb SINE MIR -8 260 149 4 778 3298 169 153 72 chr3 25352037 25352860 -134246923 - RMER19B LTR ERVK -12 890 1 4 778 206 128 26 0 chr3 25353213 25353252 -134246531 + (TTATA)n Simple_repeat Simple_repeat 5 44 0 4 778 180 0 0 0 chr3 25354419 25354439 -134245344 + (TA)n Simple_repeat Simple_repeat 2 21 0 4 778 258 81 0 0 chr3 25355916 25355953 -134243830 + (TG)n Simple_repeat Simple_repeat 2 38 0 4 778 686 288 69 49 chr3 25355988 25356233 -134243550 - B4A SINE B4 -2 290 41 4 778 180 0 0 0 chr3 25357427 25357447 -134242336 + (A)n Simple_repeat Simple_repeat 1 20 0 4 778 444 37 0 0 chr3 25357917 25357971 -134241812 + (CA)n Simple_repeat Simple_repeat 2 55 0 4 778 5167 219 39 29 chr3 25358405 25359803 -134239980 + L1_Rod LINE L1 1229 2640 -3207 4 778 25 51 0 0 chr3 25360109 25360148 -134239635 + AT_rich Low_complexity Low_complexity 1 39 0 4 778 244 213 0 16 chr3 25360828 25360890 -134238893 + Lx9 LINE L1 7575 7635 -9 4 778 5510 119 11 14 chr3 25361107 25361959 -134237824 - Lx LINE L1 -2 6652 5804 4 778 2907 126 11 2 chr3 25361961 25362406 -134237377 + Lx LINE L1 5256 5704 -179 4 778 8439 52 1 2 chr3 25362718 25363767 -134236016 - L1Md_F2 LINE L1 -251 5632 4584 4 778 7737 43 5 3 chr3 25363767 25364722 -134235061 + L1Md_F2 LINE L1 5625 6581 -1 4 778 24 53 0 0 chr3 25366056 25366094 -134233689 + AT_rich Low_complexity Low_complexity 1 38 0 4 778 3160 46 8 8 chr3 25366123 25366519 -134233264 + MTA_Mm LTR MaLR 1 396 0 4 778 301 291 58 51 chr3 25367018 25367158 -134232625 - MIR SINE MIR -125 143 4 4 778 1767 287 89 41 chr3 25368219 25368482 -134231301 + Lx9 LINE L1 6099 6387 -1257 4 778 1126 195 23 0 chr3 25368482 25368703 -134231080 - URR1A DNA MER1_type 0 226 1 4 778 1767 287 89 41 chr3 25368703 25369191 -134230592 + Lx9 LINE L1 6388 6886 -758 4 778 197 251 101 45 chr3 25369506 25369630 -134230153 + MIR SINE MIR 23 160 -48 4 778 1128 82 0 0 chr3 25370964 25371110 -134228673 + B1_Mus1 SINE Alu 3 148 0 4 778 207 69 0 0 chr3 25371715 25371744 -134228039 + (CCCTAA)n Simple_repeat Simple_repeat 3 31 0 4 778 41222 5 0 0 chr3 25371813 25378186 -134221597 - L1Md_A LINE L1 0 6582 209 4 778 24 53 0 0 chr3 25378567 25378605 -134221178 + AT_rich Low_complexity Low_complexity 1 38 0 4 778 277 390 38 25 chr3 25378607 25378765 -134221018 - RSINE1 SINE B4 -3 162 3 4 778 410 194 58 10 chr3 25379257 25379361 -134220422 + Lx9 LINE L1 7528 7636 -8 4 778 316 103 17 17 chr3 25380158 25380217 -134219566 + (TATG)n Simple_repeat Simple_repeat 1 59 0 4 778 292 345 95 0 chr3 25380220 25380336 -134219447 - B3 SINE B2 -89 127 1 4 778 23 33 0 0 chr3 25380580 25380610 -134219173 + AT_rich Low_complexity Low_complexity 1 30 0 4 778 411 341 98 43 chr3 25380695 25381063 -134218720 + MLT1C LTR MaLR 56 443 -24 4 778 715 113 24 0 chr3 25382744 25382868 -134216915 + (GAAA)n Simple_repeat Simple_repeat 2 128 0 4 778 646 268 14 0 chr3 25383042 25383180 -134216603 + B3A SINE B2 2 141 -57 4 778 366 80 0 0 chr3 25383195 25383245 -134216538 + (CA)n Simple_repeat Simple_repeat 1 50 0 4 778 22 35 0 0 chr3 25383253 25383282 -134216501 + AT_rich Low_complexity Low_complexity 1 29 0 4 778 246 136 0 0 chr3 25383807 25383851 -134215932 + (TA)n Simple_repeat Simple_repeat 1 44 0 4 778 435 303 74 22 chr3 25384705 25384840 -134214943 + RSINE1 SINE B4 7 148 -17 4 778 209 328 120 44 chr3 25385163 25385311 -134214472 + MIRc SINE MIR 3 157 -51 4 778 981 102 7 0 chr3 25386365 25386502 -134213281 + B1_Mus2 SINE Alu 2 139 -8 4 778 590 332 108 19 chr3 25386522 25386937 -134212846 + Lx9 LINE L1 6985 7436 -208 4 778 201 191 21 0 chr3 25387086 25387133 -134212650 + A-rich Low_complexity Low_complexity 3 50 0 4 778 236 351 178 26 chr3 25387169 25387400 -134212383 + MLT1D LTR MaLR 130 395 -110 5 778 264 59 0 0 chr3 25387794 25387828 -134211955 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 5 778 195 69 0 0 chr3 25387867 25387896 -134211887 + (T)n Simple_repeat Simple_repeat 1 29 0 5 778 1222 297 11 49 chr3 25388223 25388588 -134211195 - ORR1E LTR MaLR 0 359 9 5 778 537 59 0 0 chr3 25388786 25388854 -134210929 - L1Md_T LINE L1 -435 6147 6080 5 778 3817 33 0 0 chr3 25388854 25389304 -134210479 + L1Md_T LINE L1 6132 6581 -1 5 778 44 0 0 0 chr3 25389304 25389348 -134210435 + AT_rich Low_complexity Low_complexity 1 44 0 5 778 953 272 81 62 chr3 25390636 25390809 -134208974 + MTEb LTR MaLR 1 192 -187 5 778 1634 131 128 0 chr3 25390809 25391083 -134208700 + RLTR27 LTR ERVK 1 309 0 5 778 953 272 81 62 chr3 25391083 25391281 -134208502 + MTEb LTR MaLR 193 379 0 5 778 1070 100 32 3 chr3 25391306 25391494 -134208289 + L1_Mus1 LINE L1 5997 6186 -452 5 778 463 216 120 0 chr3 25392171 25392296 -134207487 + Lx7 LINE L1 7540 7679 -17 5 778 1135 59 0 0 chr3 25392405 25392541 -134207242 + B1_Mus1 SINE Alu 4 139 -9 5 778 564 56 0 0 chr3 25392650 25392722 -134207061 + (TG)n Simple_repeat Simple_repeat 1 72 0 5 778 261 352 96 7 chr3 25392902 25393048 -134206735 - B4A SINE B4 -130 162 4 5 778 305 62 30 45 chr3 25393219 25393286 -134206497 + (CAAAA)n Simple_repeat Simple_repeat 2 67 0 5 778 22 0 0 0 chr3 25393369 25393391 -134206392 + AT_rich Low_complexity Low_complexity 1 22 0 5 778 31 0 0 0 chr3 25394375 25394406 -134205377 + AT_rich Low_complexity Low_complexity 1 31 0 5 778 420 45 68 0 chr3 25395608 25395696 -134204087 + (CAAAAA)n Simple_repeat Simple_repeat 3 96 0 5 778 493 220 20 0 chr3 25396600 25396700 -134203083 + B1F2 SINE Alu 48 149 0 5 778 253 286 40 0 chr3 25397055 25397152 -134202631 + ID4_ SINE ID 13 116 -36 5 778 182 342 81 14 chr3 25399612 25399686 -134200097 + MIR SINE MIR 22 100 -162 5 778 202 342 26 0 chr3 25399711 25399787 -134199996 + MIRb SINE MIR 190 267 -1 5 778 23 33 0 0 chr3 25400151 25400181 -134199602 + AT_rich Low_complexity Low_complexity 1 30 0 5 778 621 209 0 0 chr3 25400284 25400394 -134199389 + MTC LTR MaLR 1 110 -311 5 778 1844 201 16 37 chr3 25400394 25400824 -134198959 + Lx4B LINE L1 6636 7056 -2 5 778 246 192 0 0 chr3 25400824 25400876 -134198907 + (TAGA)n Simple_repeat Simple_repeat 1 52 0 5 778 277 269 0 119 chr3 25400876 25400994 -134198789 - RMER12 LTR ERVK -486 836 733 5 778 705 200 20 20 chr3 25401315 25401463 -134198320 - B1_Mur2 SINE Alu -1 148 1 5 778 237 280 71 51 chr3 25401564 25401662 -134198121 + MLT1N2 LTR MaLR 417 516 -46 5 778 478 282 105 60 chr3 25401832 25402197 -134197586 + MTEa LTR MaLR 1 375 -4 5 778 252 366 21 0 chr3 25403941 25404034 -134195749 + PB1D7 SINE Alu 18 112 -8 5 778 366 249 7 14 chr3 25404159 25404260 -134195523 + ORR1D2 LTR MaLR 251 349 -30 5 778 1537 292 61 18 chr3 25404258 25404830 -134194953 + ORR1D2-int LTR MaLR 5 641 -939 5 778 541 288 91 42 chr3 25404846 25405053 -134194730 - MTD LTR MaLR -14 405 200 5 778 1064 100 0 0 chr3 25405071 25405211 -134194572 + B1_Mus2 SINE Alu 2 141 -6 5 778 24 0 0 0 chr3 25405213 25405237 -134194546 + AT_rich Low_complexity Low_complexity 1 24 0 5 778 194 370 29 20 chr3 25405878 25405980 -134193803 + L2a LINE L2 3324 3426 0 5 778 413 256 63 128 chr3 25406221 25406400 -134193383 - B3A SINE B2 -3 213 43 5 778 436 210 0 0 chr3 25406646 25406727 -134193056 + MTC LTR MaLR 1 81 -340 5 778 270 174 130 0 chr3 25406757 25406826 -134192957 + Lx9 LINE L1 7567 7644 0 5 778 1909 213 0 11 chr3 25406844 25407200 -134192583 + MTC LTR MaLR 70 421 0 5 778 803 312 10 17 chr3 25407817 25408110 -134191673 + B4 SINE B4 2 292 0 5 778 243 88 0 0 chr3 25408647 25408681 -134191102 + (A)n Simple_repeat Simple_repeat 1 34 0 5 778 242 271 32 8 chr3 25408717 25408840 -134190943 + (TA)n Simple_repeat Simple_repeat 2 127 0 5 778 2262 67 17 0 chr3 25408964 25409261 -134190522 - L1_Mus3 LINE L1 -62 6576 6275 5 778 243 271 0 17 chr3 25409306 25409366 -134190417 - PB1 SINE Alu -2 125 67 5 778 210 229 104 91 chr3 25409466 25409543 -134190240 + ID2 SINE ID 6 83 0 5 778 293 214 99 14 chr3 25409580 25409651 -134190132 + RMER15 LTR ERVL 400 476 -99 5 778 1567 275 66 27 chr3 25409693 25410359 -134189424 + L1MA6 LINE L1 5369 6060 -240 5 778 932 149 20 0 chr3 25410635 25410783 -134189000 - RMER1C Other Other -138 1204 1054 5 778 404 48 0 46 chr3 25410798 25410863 -134188920 - B1_Mus2 SINE Alu -1 146 85 5 778 619 205 0 54 chr3 25410863 25410992 -134188791 - RMER1C Other Other -308 1034 913 5 778 259 342 48 24 chr3 25412357 25412522 -134187261 + Tigger14a DNA MER2_type 107 275 -49 5 778 967 301 47 78 chr3 25413251 25413633 -134186150 - MTE2b LTR MaLR -8 371 2 5 778 230 327 76 87 chr3 25414482 25414666 -134185117 - L2b LINE L2 -1 3374 3193 5 778 492 349 152 7 chr3 25414952 25415365 -134184418 + Lx8 LINE L1 6811 7283 -190 5 778 326 247 13 0 chr3 25415444 25415521 -134184262 + Lx7 LINE L1 6906 6983 -713 5 778 231 245 20 0 chr3 25415520 25415569 -134184214 - RMER1C Other Other -802 540 491 5 778 2362 275 50 16 chr3 25415563 25416236 -134183547 + RMER1C Other Other 639 1334 -8 5 778 780 11 0 0 chr3 25416241 25416330 -134183453 + (GAA)n Simple_repeat Simple_repeat 3 91 0 5 778 399 383 17 0 chr3 25416724 25416904 -134182879 + B3A SINE B2 1 183 -15 5 778 519 208 0 0 chr3 25416920 25417040 -134182743 + (CA)n Simple_repeat Simple_repeat 2 121 0 5 778 23 0 0 0 chr3 25417824 25417847 -134181936 + AT_rich Low_complexity Low_complexity 1 23 0 5 778 188 67 0 32 chr3 25418517 25418548 -134181235 + (TTTG)n Simple_repeat Simple_repeat 3 32 0 5 778 500 328 7 7 chr3 25419054 25419189 -134180594 + ID_B1 SINE B4 81 215 -9 5 778 583 229 9 0 chr3 25419693 25419814 -134179969 + B1_Mur2 SINE Alu 17 138 -11 5 778 234 290 64 96 chr3 25420037 25420224 -134179559 - L2 LINE L2 -674 2745 2565 5 778 918 301 94 3 chr3 25420667 25420964 -134178819 + MTE2b LTR MaLR 1 324 -55 5 778 517 307 15 0 chr3 25421302 25421439 -134178344 - RSINE1 SINE B4 -19 146 8 5 778 327 85 0 0 chr3 25421927 25421974 -134177809 + (TTG)n Simple_repeat Simple_repeat 2 48 0 5 778 291 54 0 0 chr3 25422027 25422064 -134177719 + (TTTA)n Simple_repeat Simple_repeat 1 37 0 5 778 577 291 91 0 chr3 25422370 25422545 -134177238 + B4A SINE B4 102 292 0 5 778 225 0 0 0 chr3 25422560 25422585 -134177198 + (CA)n Simple_repeat Simple_repeat 2 26 0 5 778 22 35 0 0 chr3 25422685 25422714 -134177069 + AT_rich Low_complexity Low_complexity 1 29 0 5 778 270 314 56 47 chr3 25424269 25424376 -134175407 + B3 SINE B2 27 134 -82 5 778 378 61 0 0 chr3 25424418 25424467 -134175316 + (CA)n Simple_repeat Simple_repeat 2 50 0 5 778 210 71 0 0 chr3 25424486 25424514 -134175269 + (AGGGGG)n Simple_repeat Simple_repeat 6 33 0 5 778 586 290 31 31 chr3 25424567 25424759 -134175024 + B3 SINE B2 10 201 -15 5 778 570 215 9 0 chr3 25424741 25424848 -134174935 + B1_Mur1 SINE Alu 30 137 -12 5 778 23 33 0 0 chr3 25425194 25425224 -134174559 + AT_rich Low_complexity Low_complexity 1 30 0 5 778 1102 91 7 0 chr3 25425243 25425386 -134174397 - B1_Mus1 SINE Alu 0 148 5 5 778 180 0 0 0 chr3 25425879 25425899 -134173884 + (TG)n Simple_repeat Simple_repeat 1 20 0 5 778 349 322 42 7 chr3 25425948 25426092 -134173691 - B4A SINE B4 -17 275 127 5 778 3422 169 47 6 chr3 25426275 25426918 -134172865 + Lx2B LINE L1 6331 6999 -1 5 779 3162 175 5 27 chr3 25431572 25432155 -134167628 + Lx4A LINE L1 6489 7058 0 5 779 219 173 0 0 chr3 25433058 25433110 -134166673 + (CA)n Simple_repeat Simple_repeat 1 52 0 5 779 249 146 35 35 chr3 25433117 25433174 -134166609 + (CAGAGA)n Simple_repeat Simple_repeat 4 60 0 5 779 674 341 54 29 chr3 25433843 25434121 -134165662 + B4A SINE B4 8 292 0 5 779 2238 195 100 51 chr3 25434722 25435332 -134164451 + RLTR26 LTR ERVK 3 642 0 5 779 279 0 0 0 chr3 25435718 25435749 -134164034 + (A)n Simple_repeat Simple_repeat 1 31 0 5 779 342 0 0 0 chr3 25436386 25436424 -134163359 + (TG)n Simple_repeat Simple_repeat 2 39 0 5 779 212 336 136 27 chr3 25436547 25436657 -134163126 - B4A SINE B4 -169 123 2 5 779 387 0 0 0 chr3 25437301 25437344 -134162439 + (CA)n Simple_repeat Simple_repeat 2 44 0 5 779 298 71 71 0 chr3 25437350 25437406 -134162377 + (CAGAGA)n Simple_repeat Simple_repeat 1 60 0 5 779 1851 226 27 7 chr3 25437958 25438364 -134161419 - MTD LTR MaLR -5 414 1 5 779 406 316 26 0 chr3 25439111 25439228 -134160555 + ID_B1 SINE B4 91 210 -14 5 779 501 133 0 0 chr3 25439233 25439331 -134160452 + (GA)n Simple_repeat Simple_repeat 1 98 0 5 779 450 289 0 0 chr3 25439468 25439558 -134160225 + B3A SINE B2 1 90 -108 5 779 29 60 0 0 chr3 25441100 25441150 -134158633 + AT_rich Low_complexity Low_complexity 1 50 0 5 779 21 36 0 0 chr3 25441558 25441586 -134158197 + AT_rich Low_complexity Low_complexity 1 28 0 5 779 371 329 87 79 chr3 25441685 25441848 -134157935 + B4A SINE B4 37 202 -90 5 779 416 314 191 60 chr3 25441848 25442183 -134157600 - MTE2a LTR MaLR 0 379 1 5 779 371 329 87 79 chr3 25442183 25442273 -134157510 + B4A SINE B4 203 292 0 5 779 268 257 115 29 chr3 25443508 25443612 -134156171 - Lx7 LINE L1 -21 7675 7563 5 779 1516 244 49 10 chr3 25443613 25444002 -134155781 + Lx7 LINE L1 6922 7325 -371 5 779 261 260 0 27 chr3 25444603 25444678 -134155105 - RSINE1 SINE B4 -49 116 44 6 779 296 318 22 11 chr3 25444941 25445030 -134154753 + 5S rRNA rRNA 1 90 -31 6 779 706 333 10 31 chr3 25445237 25445531 -134154252 - B4A SINE B4 -4 288 1 6 779 241 346 13 0 chr3 25445718 25445796 -134153987 + MER20 DNA MER1_type 2 80 -139 6 779 22 35 0 0 chr3 25446390 25446419 -134153364 + AT_rich Low_complexity Low_complexity 1 29 0 6 779 324 317 75 48 chr3 25448473 25448619 -134151164 + MER102b DNA MER1_type 4 153 -188 6 779 270 73 0 0 chr3 25448630 25448671 -134151112 + (T)n Simple_repeat Simple_repeat 1 41 0 6 779 319 312 62 0 chr3 25449458 25449570 -134150213 - Tigger7 DNA MER2_type -2131 360 242 6 779 1153 283 61 3 chr3 25449595 25449925 -134149858 - MTE2b LTR MaLR -14 365 17 6 779 263 273 76 68 chr3 25450071 25450189 -134149594 + ORR1E LTR MaLR 79 197 -162 6 779 270 0 0 0 chr3 25450442 25450472 -134149311 + (TA)n Simple_repeat Simple_repeat 2 31 0 6 779 584 328 234 9 chr3 25450929 25451271 -134148512 + MTD LTR MaLR 1 419 0 6 779 714 105 0 0 chr3 25451492 25451606 -134148177 + (TTTC)n Simple_repeat Simple_repeat 1 114 0 6 779 599 267 15 0 chr3 25451614 25451749 -134148034 - B1_Mus2 SINE Alu -10 137 1 6 779 21 36 0 0 chr3 25454015 25454043 -134145740 + AT_rich Low_complexity Low_complexity 1 28 0 6 779 217 304 17 67 chr3 25454211 25454331 -134145452 + MIR SINE MIR 102 215 -47 6 779 234 0 0 0 chr3 25454653 25454679 -134145104 + (CAA)n Simple_repeat Simple_repeat 2 27 0 6 779 235 261 54 0 chr3 25455383 25455494 -134144289 + L1MC1 LINE L1 5190 5306 -840 6 779 1173 305 85 15 chr3 25455591 25456263 -134143520 + L1MC1 LINE L1 5452 6170 -163 6 779 616 260 20 0 chr3 25456386 25456532 -134143251 - B1_Mur1 SINE Alu 0 149 1 6 779 229 255 208 0 chr3 25456548 25456654 -134143129 + Lx9 LINE L1 7322 7449 -195 6 779 42 20 0 0 chr3 25456670 25456719 -134143064 + AT_rich Low_complexity Low_complexity 1 49 0 6 779 350 289 12 0 chr3 25457597 25457680 -134142103 + B3A SINE B2 90 173 -25 6 779 2785 56 3 19 chr3 25457704 25458068 -134141715 + L1_Mus1 LINE L1 6210 6567 0 6 779 423 91 0 13 chr3 25458097 25458175 -134141608 - L1Md_F2 LINE L1 -2 6580 6504 6 779 2024 60 0 0 chr3 25458181 25458432 -134141351 - L1Md_F2 LINE L1 -274 6308 6058 6 779 2467 46 0 0 chr3 25458430 25458732 -134141051 + L1Md_F2 LINE L1 5758 6059 -523 6 779 203 178 22 0 chr3 25459628 25459673 -134140110 + (CA)n Simple_repeat Simple_repeat 1 46 0 6 779 195 42 0 0 chr3 25459691 25459715 -134140068 + (CG)n Simple_repeat Simple_repeat 2 25 0 6 779 348 24 0 0 chr3 25459715 25459755 -134140028 + (CA)n Simple_repeat Simple_repeat 1 41 0 6 779 329 62 0 20 chr3 25460716 25460765 -134139018 + (GGA)n Simple_repeat Simple_repeat 3 50 0 6 779 312 209 39 50 chr3 25461029 25461210 -134138573 + (CA)n Simple_repeat Simple_repeat 1 179 0 6 779 234 228 96 16 chr3 25461145 25461270 -134138513 + (CATAC)n Simple_repeat Simple_repeat 1 135 0 6 779 415 204 37 45 chr3 25461295 25461654 -134138129 + (CA)n Simple_repeat Simple_repeat 1 355 0 6 779 26 0 0 0 chr3 25461879 25461905 -134137878 + AT_rich Low_complexity Low_complexity 1 26 0 6 779 34 0 0 0 chr3 25462648 25462682 -134137101 + AT_rich Low_complexity Low_complexity 1 34 0 6 779 251 175 0 34 chr3 25463493 25463552 -134136231 + A-rich Low_complexity Low_complexity 4 60 0 6 779 2084 179 58 10 chr3 25464681 25464861 -134134922 - MTC LTR MaLR -2 419 240 6 779 297 0 0 0 chr3 25464861 25464894 -134134889 + (CTTG)n Simple_repeat Simple_repeat 2 34 0 6 779 2084 179 58 10 chr3 25464894 25465113 -134134670 - MTC LTR MaLR -182 239 3 6 779 382 0 0 94 chr3 25465271 25465335 -134134448 + (TA)n Simple_repeat Simple_repeat 2 59 0 6 779 329 246 35 56 chr3 25465482 25465624 -134134159 + Lx9 LINE L1 7495 7633 -11 6 779 183 42 0 0 chr3 25465624 25465648 -134134135 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 6 779 329 117 17 0 chr3 25467292 25467352 -134132431 + (TG)n Simple_repeat Simple_repeat 1 61 0 6 779 378 0 0 0 chr3 25467352 25467393 -134132390 + (GA)n Simple_repeat Simple_repeat 1 42 0 6 779 477 220 0 0 chr3 25467727 25467836 -134131947 + (TATG)n Simple_repeat Simple_repeat 2 110 0 6 779 346 252 42 59 chr3 25468884 25469002 -134130781 - PB1D10 SINE Alu -1 116 1 6 779 1153 70 0 0 chr3 25469780 25469922 -134129861 - B1_Mus2 SINE Alu -5 142 1 6 779 2252 159 44 24 chr3 25469996 25470409 -134129374 + MTC LTR MaLR 1 421 0 6 779 217 185 29 58 chr3 25471790 25471859 -134127924 + (CAGAGA)n Simple_repeat Simple_repeat 6 72 0 6 779 330 45 0 0 chr3 25473066 25473110 -134126673 + (CA)n Simple_repeat Simple_repeat 2 45 0 6 779 1043 308 33 21 chr3 25475741 25476073 -134123710 + MTE2b LTR MaLR 5 340 -39 6 779 340 326 31 120 chr3 25476771 25477137 -134122646 + Lx8 LINE L1 6819 7172 -301 6 779 539 57 0 0 chr3 25477136 25477206 -134122577 + L1_Mur1 LINE L1 2961 3030 -2856 6 779 3403 68 0 7 chr3 25477204 25477664 -134122119 + L1_Mur1 LINE L1 3841 4297 -1589 6 779 733 88 0 0 chr3 25477659 25477761 -134122022 + L1_Mur1 LINE L1 5351 5452 -434 6 779 6645 92 55 0 chr3 25477762 25478732 -134121051 + Lx3_Mus LINE L1 5979 7001 -8 6 779 22 56 0 0 chr3 25479545 25479581 -134120202 + AT_rich Low_complexity Low_complexity 1 36 0 6 779 403 365 53 29 chr3 25479623 25479810 -134119973 + B3A SINE B2 3 192 -24 6 779 980 158 12 0 chr3 25479824 25480066 -134119717 + (TCTA)n Simple_repeat Simple_repeat 1 245 0 6 779 438 364 24 5 chr3 25480415 25480622 -134119161 + ID_B1 SINE B4 7 217 -7 6 779 733 266 52 52 chr3 25481201 25481487 -134118296 - B4A SINE B4 -4 288 3 6 779 279 319 21 0 chr3 25481630 25481724 -134118059 + MIRc SINE MIR 136 231 -37 6 779 370 363 0 65 chr3 25482369 25482537 -134117246 + B4A SINE B4 132 288 -4 6 779 243 317 210 31 chr3 25482631 25482950 -134116833 + L1_Rod LINE L1 2077 2452 -3395 6 779 755 90 8 0 chr3 25483003 25483125 -134116658 + (TTTC)n Simple_repeat Simple_repeat 4 126 0 6 779 1585 216 102 0 chr3 25484070 25484404 -134115379 + ORR1C1 LTR MaLR 1 368 -10 6 779 21 36 0 0 chr3 25484585 25484613 -134115170 + AT_rich Low_complexity Low_complexity 1 28 0 6 779 24 0 0 0 chr3 25485762 25485786 -134113997 + AT_rich Low_complexity Low_complexity 1 24 0 6 779 5634 36 0 0 chr3 25486966 25487633 -134112150 + L1Md_T LINE L1 5916 6582 0 6 779 309 331 50 7 chr3 25487830 25487970 -134111813 + MER2 DNA MER2_type 93 238 -107 6 779 23 33 0 0 chr3 25488118 25488148 -134111635 + AT_rich Low_complexity Low_complexity 1 30 0 6 779 312 189 0 0 chr3 25488593 25488667 -134111116 + GA-rich Low_complexity Low_complexity 2 75 0 6 779 600 50 0 0 chr3 25488730 25488810 -134110973 + (GTTTG)n Simple_repeat Simple_repeat 2 81 0 6 779 7794 99 7 2 chr3 25490024 25491713 -134108070 + L1_Mus3 LINE L1 4933 6632 -6 6 779 225 0 0 0 chr3 25491729 25491754 -134108029 + (CA)n Simple_repeat Simple_repeat 2 26 0 6 779 258 273 0 0 chr3 25491830 25491885 -134107898 - Lx9 LINE L1 -451 7193 7139 6 779 201 128 85 0 chr3 25491885 25491932 -134107851 + A-rich Low_complexity Low_complexity 5 55 0 6 779 1018 213 15 0 chr3 25491934 25492136 -134107647 + URR1A DNA MER1_type 6 210 -16 6 779 390 222 59 67 chr3 25492146 25492281 -134107502 + MTD LTR MaLR 240 373 -46 6 779 504 188 51 8 chr3 25492290 25492408 -134107375 + Lx9 LINE L1 7014 7136 -508 6 779 321 267 0 0 chr3 25492503 25492619 -134107164 + (TATATG)n Simple_repeat Simple_repeat 2 117 0 6 779 21 36 0 0 chr3 25493092 25493120 -134106663 + AT_rich Low_complexity Low_complexity 1 28 0 6 779 1321 254 30 69 chr3 25493383 25493819 -134105964 + MTC LTR MaLR 1 419 -2 6 779 44 0 0 0 chr3 25494694 25494738 -134105045 + AT_rich Low_complexity Low_complexity 1 44 0 6 779 295 289 147 59 chr3 25495400 25495536 -134104247 + B4A SINE B4 5 152 -140 6 779 607 252 19 19 chr3 25495537 25495695 -134104088 - RMER19C LTR ERVK 0 611 454 6 779 257 305 64 64 chr3 25497374 25497450 -134102333 - RMER12 LTR ERVK -474 848 771 6 779 315 0 0 0 chr3 25497450 25497485 -134102298 + (TC)n Simple_repeat Simple_repeat 1 35 0 6 779 257 305 64 64 chr3 25497485 25497548 -134102235 - RMER12 LTR ERVK -552 770 710 6 779 261 0 0 0 chr3 25497994 25498023 -134101760 + (A)n Simple_repeat Simple_repeat 1 29 0 6 779 537 345 108 50 chr3 25498159 25498336 -134101447 + MER57E1 LTR ERV1 22 198 -174 6 779 1127 62 21 0 chr3 25498336 25498481 -134101302 - B1_Mus1 SINE Alu 0 148 1 6 779 537 345 108 50 chr3 25498481 25498626 -134101157 + MER57E1 LTR ERV1 199 363 -9 6 779 276 276 17 0 chr3 25498774 25498832 -134100951 + RSINE1 SINE B4 70 128 -37 6 779 4271 19 0 0 chr3 25499507 25499989 -134099794 + LTRIS_Mm LTR ERV1 1 482 0 6 779 1995 266 51 29 chr3 25500053 25500351 -134099432 - ORR1D1-int LTR MaLR -626 744 441 1 779 405 0 0 0 chr3 25500351 25500396 -134099387 + (TA)n Simple_repeat Simple_repeat 2 46 0 2 779 1995 266 51 29 chr3 25500396 25500719 -134099064 - ORR1D1-int LTR MaLR -930 440 109 1 779 1083 84 0 0 chr3 25500720 25500863 -134098920 + B1_Mus2 SINE Alu 2 144 -3 3 779 260 19 36 55 chr3 25500866 25500921 -134098862 + (CAAA)n Simple_repeat Simple_repeat 2 55 0 4 779 307 250 90 0 chr3 25500968 25501068 -134098715 - RLTR25A LTR ERVK -474 629 521 5 779 3542 193 59 50 chr3 25501016 25501830 -134097953 - ORR1A4-int LTR MaLR -1142 821 1 6 779 1665 163 66 0 chr3 25501834 25502135 -134097648 - ORR1A4 LTR MaLR -8 321 1 6 779 639 316 53 25 chr3 25502191 25502434 -134097349 - ORR1D1 LTR MaLR -96 278 29 1 779 362 189 9 0 chr3 25502668 25502779 -134097004 + CT-rich Low_complexity Low_complexity 1 112 0 7 779 504 0 0 0 chr3 25502895 25502951 -134096832 + (TTTA)n Simple_repeat Simple_repeat 4 59 0 8 779 249 30 30 0 chr3 25502998 25503031 -134096752 - U2 snRNA snRNA -154 34 1 9 779 21 0 0 0 chr3 25504353 25504374 -134095409 + AT_rich Low_complexity Low_complexity 1 21 0 1 779 1484 248 161 11 chr3 25504378 25504851 -134094932 - Lx9 LINE L1 0 7644 7101 1 779 399 291 101 45 chr3 25504843 25505041 -134094742 - Tigger2b DNA MER2_type -510 216 8 1 779 464 128 18 0 chr3 25505252 25505361 -134094422 + (TCTG)n Simple_repeat Simple_repeat 2 112 0 1 779 366 23 0 0 chr3 25505362 25505405 -134094378 + (CA)n Simple_repeat Simple_repeat 1 43 0 1 779 4812 107 7 17 chr3 25506231 25506943 -134092840 + Lx LINE L1 5948 6652 -2 1 779 270 116 0 0 chr3 25507147 25507190 -134092593 + (GA)n Simple_repeat Simple_repeat 1 43 0 1 779 296 24 24 0 chr3 25507383 25507424 -134092359 + (TTTG)n Simple_repeat Simple_repeat 2 43 0 1 779 1063 88 0 0 chr3 25507424 25507561 -134092222 - B1_Mm SINE Alu -10 137 1 1 779 1772 66 0 12 chr3 25507586 25507830 -134091953 - L1Md_F2 LINE L1 0 6582 6342 1 779 312 48 0 0 chr3 25508730 25508772 -134091011 + (CA)n Simple_repeat Simple_repeat 1 42 0 2 779 26 0 0 0 chr3 25508957 25508983 -134090800 + AT_rich Low_complexity Low_complexity 1 26 0 2 779 216 315 0 33 chr3 25509495 25509587 -134090196 + CT-rich Low_complexity Low_complexity 2 90 0 2 779 262 43 0 80 chr3 25509595 25509645 -134090138 + (TTCC)n Simple_repeat Simple_repeat 3 48 0 2 779 224 188 0 40 chr3 25511589 25511639 -134088144 + (TATATG)n Simple_repeat Simple_repeat 4 51 0 2 779 206 366 127 39 chr3 25513419 25513780 -134086003 - L2c LINE L2 -1 3386 2994 2 779 348 43 0 0 chr3 25515486 25515532 -134084251 + (TTGTG)n Simple_repeat Simple_repeat 4 49 0 2 779 1071 52 0 0 chr3 25515532 25515668 -134084115 - B1_Mus2 SINE Alu -3 144 9 2 779 222 156 22 0 chr3 25515904 25515949 -134083834 + (TTTG)n Simple_repeat Simple_repeat 2 47 0 2 779 219 200 109 0 chr3 25516269 25516324 -134083459 + MIR SINE MIR 136 196 -66 2 779 233 336 15 53 chr3 25518089 25518221 -134081562 - Lx8 LINE L1 -102 7371 7245 3 779 543 157 8 24 chr3 25518532 25518656 -134081127 + CT-rich Low_complexity Low_complexity 3 124 0 3 779 1760 75 29 0 chr3 25520967 25521206 -134078577 - L1_Mus1 LINE L1 0 6567 6322 3 779 3550 74 2 0 chr3 25521206 25521665 -134078118 - L1_Mm LINE L1 -47 5836 5377 3 779 368 296 143 57 chr3 25522026 25522291 -134077492 + Lx6 LINE L1 7111 7398 -62 3 779 4651 58 0 5 chr3 25522819 25523408 -134076375 - L1Md_F2 LINE L1 -12 6570 5985 3 779 201 74 0 0 chr3 25523714 25523741 -134076042 + (TTG)n Simple_repeat Simple_repeat 1 27 0 3 779 244 128 105 0 chr3 25523748 25523810 -134075973 - B1_Mur4 SINE Alu -7 143 45 3 779 226 211 41 27 chr3 25525949 25526022 -134073761 + T-rich Low_complexity Low_complexity 4 77 0 3 779 1616 129 0 15 chr3 25526030 25526289 -134073494 - L1Md_F2 LINE L1 -14 6568 6314 3 779 9370 60 1 0 chr3 25526290 25527932 -134071851 + L1Md_F2 LINE L1 4685 6328 -254 3 779 251 290 104 110 chr3 25528168 25528184 -134071599 - B4A SINE B4 -47 245 86 4 779 317 331 69 41 chr3 25528184 25528329 -134071454 - B1F2 SINE Alu 0 149 1 4 779 455 290 43 0 chr3 25528559 25528697 -134071086 + B1F SINE Alu 1 144 -5 4 779 558 338 7 0 chr3 25528747 25528898 -134070885 + RSINE1 SINE B4 13 164 -1 4 779 279 0 0 0 chr3 25528902 25528933 -134070850 + (TAAA)n Simple_repeat Simple_repeat 1 31 0 4 779 27 87 0 0 chr3 25529563 25529632 -134070151 + AT_rich Low_complexity Low_complexity 1 69 0 4 779 392 283 56 56 chr3 25529637 25529798 -134069985 - RSINE1 SINE B4 -2 163 3 4 779 278 206 31 16 chr3 25530550 25530614 -134069169 + RSINE1 SINE B4 56 120 -45 4 779 347 340 56 28 chr3 25530817 25531032 -134068751 + Lx8 LINE L1 7253 7473 0 4 779 594 39 0 0 chr3 25531329 25531406 -134068377 + (CA)n Simple_repeat Simple_repeat 1 77 0 4 779 1229 213 82 7 chr3 25531884 25532154 -134067629 - ORR1B1 LTR MaLR -62 332 43 5 779 463 340 65 36 chr3 25532278 25532525 -134067258 - Arthur1C DNA Tip100 -109 254 1 5 779 647 257 18 154 chr3 25533812 25533852 -134065931 + B3A SINE B2 4 37 -161 5 779 1128 69 0 0 chr3 25533852 25533996 -134065787 + B1_Mus1 SINE Alu 5 148 0 5 779 647 257 18 154 chr3 25533996 25534176 -134065607 + B3A SINE B2 38 194 -4 5 779 996 244 30 13 chr3 25534642 25534945 -134064838 + L1VL4 LINE L1 510 817 -5485 5 779 5508 181 22 96 chr3 25534913 25535588 -134064195 + Lx3C LINE L1 1839 2514 -3372 5 779 1928 137 18 50 chr3 25535588 25535926 -134063857 - ORR1A2 LTR MaLR 0 327 1 5 779 5508 181 22 96 chr3 25535926 25536275 -134063508 + Lx3C LINE L1 2515 2874 -3012 5 779 1249 67 6 16 chr3 25536275 25536457 -134063326 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 5 779 5508 181 22 96 chr3 25536457 25536873 -134062910 + Lx3C LINE L1 2875 3172 -2714 5 779 219 36 0 0 chr3 25536879 25536907 -134062876 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 5 779 1433 233 99 60 chr3 25536939 25537436 -134062347 + RLTR20A LTR ERVK 11 526 -15 5 779 7844 159 19 19 chr3 25537438 25538941 -134060842 + Lx3C LINE L1 3167 4670 -1207 5 779 2962 156 53 16 chr3 25538910 25539244 -134060539 + Lx3C LINE L1 5305 5661 -225 5 779 1895 202 87 75 chr3 25539244 25539821 -134059962 - RLTR31A_Mm LTR ERVK 0 584 1 6 779 2962 158 75 16 chr3 25539821 25540238 -134059545 + Lx3C LINE L1 5659 6118 -858 5 779 22 56 0 0 chr3 25540350 25540386 -134059397 + AT_rich Low_complexity Low_complexity 1 36 0 6 779 372 43 0 0 chr3 25541034 25541080 -134058703 + (TG)n Simple_repeat Simple_repeat 1 46 0 6 779 261 0 0 0 chr3 25542145 25542174 -134057609 + (TC)n Simple_repeat Simple_repeat 2 30 0 6 779 438 20 0 0 chr3 25542174 25542224 -134057559 + (TG)n Simple_repeat Simple_repeat 2 52 0 6 779 242 316 124 54 chr3 25542356 25542520 -134057263 - MIRb SINE MIR -73 195 19 6 779 243 0 0 0 chr3 25542809 25542836 -134056947 + (CA)n Simple_repeat Simple_repeat 2 28 0 6 779 546 16 0 0 chr3 25542836 25542898 -134056885 + (GA)n Simple_repeat Simple_repeat 2 64 0 6 779 626 308 50 32 chr3 25543317 25543535 -134056248 - B4A SINE B4 -68 224 3 6 779 2764 40 0 9 chr3 25543610 25543959 -134055824 + L1_Mus1 LINE L1 6222 6567 0 6 779 1743 10 0 0 chr3 25544663 25544867 -134054916 + L1Md_T LINE L1 6379 6582 0 7 779 213 39 0 0 chr3 25544873 25544899 -134054884 + (A)n Simple_repeat Simple_repeat 1 26 0 7 779 362 70 35 0 chr3 25546479 25546536 -134053247 + (TAAAA)n Simple_repeat Simple_repeat 1 59 0 7 779 239 343 0 0 chr3 25546886 25546956 -134052827 + ID4_ SINE ID 5 74 -9 7 779 2671 207 123 17 chr3 25546997 25547632 -134052151 + RMER1B Other Other 362 1063 -3 7 779 310 347 51 40 chr3 25547825 25548002 -134051781 - Lx8 LINE L1 -153 7320 7142 7 779 21 0 0 0 chr3 25548463 25548484 -134051299 + AT_rich Low_complexity Low_complexity 1 21 0 7 779 270 283 7 42 chr3 25548737 25548881 -134050902 + T-rich Low_complexity Low_complexity 2 140 0 7 779 195 42 0 0 chr3 25549254 25549278 -134050505 + (TG)n Simple_repeat Simple_repeat 1 24 0 7 779 499 303 5 73 chr3 25549287 25549479 -134050304 - B3A SINE B2 -19 179 1 7 779 1447 214 51 69 chr3 25549735 25550126 -134049657 - ORR1C2 LTR MaLR 0 384 1 8 779 1604 194 138 9 chr3 25550329 25550678 -134049105 + ORR1B1 LTR MaLR 1 394 0 8 779 736 269 26 26 chr3 25550678 25550863 -134048920 - B3A SINE B2 -11 187 2 8 779 378 330 0 0 chr3 25551154 25551269 -134048514 - B4A SINE B4 0 292 178 8 779 441 54 0 0 chr3 25551528 25551584 -134048199 + (TA)n Simple_repeat Simple_repeat 2 57 0 8 779 3277 230 140 32 chr3 25551612 25552535 -134047248 - RMER1B Other Other 0 1066 45 8 779 1320 219 126 21 chr3 25554444 25554700 -134045083 + Lx9 LINE L1 7217 7503 -141 8 779 369 0 0 0 chr3 25554700 25554741 -134045042 + (TG)n Simple_repeat Simple_repeat 2 42 0 8 779 1320 219 126 21 chr3 25554741 25554866 -134044917 + Lx9 LINE L1 7504 7637 -7 8 779 333 0 0 0 chr3 25554964 25555001 -134044782 + (TG)n Simple_repeat Simple_repeat 1 37 0 8 779 698 322 32 57 chr3 25555004 25555251 -134044532 - B4 SINE B4 -51 241 1 8 97 470 401 38 28 chr3 25558896 25559183 -134040600 + B4A SINE B4 3 292 0 9 780 25 0 0 0 chr3 25559236 25559261 -134040522 + AT_rich Low_complexity Low_complexity 1 25 0 9 780 214 308 48 32 chr3 25559285 25559409 -134040374 - MIR SINE MIR 0 262 137 9 780 546 191 0 0 chr3 25560645 25560771 -134039012 + (TG)n Simple_repeat Simple_repeat 1 126 0 9 780 1913 66 0 4 chr3 25560937 25561194 -134038589 - L1_Mus2 LINE L1 -201 6365 6110 9 780 1213 66 6 0 chr3 25561194 25561484 -134038299 + L1_Mus2 LINE L1 6396 6566 0 9 780 23 68 0 0 chr3 25561600 25561644 -134038139 + AT_rich Low_complexity Low_complexity 1 44 0 9 780 285 135 173 13 chr3 25563705 25563780 -134036003 + Lx2B LINE L1 6910 6996 -4 9 780 468 276 8 41 chr3 25564209 25564330 -134035453 + PB1D10 SINE Alu 1 117 0 9 780 365 256 100 8 chr3 25564849 25564979 -134034804 + B1F SINE Alu 1 142 -7 9 780 37 52 0 0 chr3 25566825 25566883 -134032900 + AT_rich Low_complexity Low_complexity 1 58 0 9 780 13540 184 81 11 chr3 25567297 25568196 -134031587 + L1_Mur2 LINE L1 391 1304 -5782 1 780 1179 36 0 0 chr3 25568196 25568334 -134031449 + B1_Mus1 SINE Alu 1 138 -10 1 780 428 0 19 0 chr3 25568334 25568386 -134031397 + (CAAAA)n Simple_repeat Simple_repeat 2 54 0 1 780 13540 128 52 44 chr3 25568386 25569126 -134030657 + L1_Mur2 LINE L1 1305 2058 -3819 1 780 516 16 0 0 chr3 25569126 25569187 -134030596 + (CA)n Simple_repeat Simple_repeat 1 61 0 1 780 13540 128 52 44 chr3 25569187 25569559 -134030224 + L1_Mur2 LINE L1 2059 2442 -3435 1 780 1163 75 0 0 chr3 25569559 25569705 -134030078 - B1_Mus2 SINE Alu 0 147 2 1 780 13540 128 52 44 chr3 25569705 25570522 -134029261 + L1_Mur2 LINE L1 2443 3218 -2659 1 780 468 0 0 0 chr3 25570522 25570574 -134029209 + (GA)n Simple_repeat Simple_repeat 1 52 0 1 780 13540 128 52 44 chr3 25570574 25571255 -134028528 + L1_Mur2 LINE L1 3219 3942 -1935 1 780 1165 222 20 40 chr3 25571261 25571557 -134028226 + Lx4B LINE L1 6767 7056 -2 1 780 296 77 0 19 chr3 25571580 25571633 -134028150 + (CAAAA)n Simple_repeat Simple_repeat 2 53 0 1 780 270 0 0 0 chr3 25571795 25571825 -134027958 + (TG)n Simple_repeat Simple_repeat 2 31 0 1 780 270 0 0 0 chr3 25571983 25572013 -134027770 + (T)n Simple_repeat Simple_repeat 1 30 0 1 780 335 362 69 43 chr3 25572775 25573006 -134026777 + MIRb SINE MIR 4 240 -28 1 780 364 189 94 0 chr3 25573274 25573380 -134026403 - Lx9 LINE L1 0 7644 7529 1 780 690 164 0 0 chr3 25573436 25573582 -134026201 + (CA)n Simple_repeat Simple_repeat 1 146 0 1 780 255 288 114 29 chr3 25573590 25573765 -134026018 - Lx9 LINE L1 -225 7419 7230 1 780 225 336 42 76 chr3 25573768 25573887 -134025896 - ID_B1 SINE B4 -109 115 1 1 780 482 163 474 7 chr3 25573919 25574073 -134025710 - URR1A DNA MER1_type 0 226 1 1 780 535 300 94 0 chr3 25574095 25574255 -134025528 + B3 SINE B2 42 216 0 1 780 23 0 0 0 chr3 25574313 25574336 -134025447 + AT_rich Low_complexity Low_complexity 1 23 0 1 780 616 252 62 6 chr3 25575501 25575661 -134024122 - B4A SINE B4 -6 286 118 1 780 453 351 65 32 chr3 25576368 25576615 -134023168 - B4 SINE B4 -17 275 21 1 780 423 308 148 19 chr3 25577532 25577694 -134022089 + B3A SINE B2 2 184 -32 1 780 243 0 0 0 chr3 25577706 25577733 -134022050 + (CA)n Simple_repeat Simple_repeat 1 27 0 1 780 22 35 0 0 chr3 25577738 25577767 -134022016 + AT_rich Low_complexity Low_complexity 1 29 0 1 780 341 261 241 48 chr3 25577864 25578176 -134021607 + Lx8 LINE L1 6867 7238 -235 1 780 216 245 38 0 chr3 25578219 25578272 -134021511 - B3A SINE B2 -114 84 30 1 780 427 275 191 9 chr3 25579180 25579411 -134020372 - L1MCa LINE L1 -3743 2578 2306 1 780 288 0 0 0 chr3 25579791 25579823 -134019960 + (TTAG)n Simple_repeat Simple_repeat 4 35 0 1 780 368 341 75 33 chr3 25579952 25580258 -134019525 - L1MCa LINE L1 -4621 1887 1569 1 780 507 101 0 0 chr3 25581155 25581234 -134018549 + (GA)n Simple_repeat Simple_repeat 2 80 0 1 780 689 253 27 0 chr3 25581420 25581570 -134018213 + ORR1D1 LTR MaLR 35 188 -186 1 780 212 212 35 59 chr3 25581833 25581918 -134017865 + T-rich Low_complexity Low_complexity 5 87 0 1 780 452 146 0 10 chr3 25581926 25582030 -134017753 + GA-rich Low_complexity Low_complexity 2 104 0 1 780 1133 71 0 0 chr3 25583056 25583197 -134016586 - B1_Mus1 SINE Alu -6 142 2 1 780 1537 97 0 13 chr3 25583225 25583455 -134016328 - L1Md_F2 LINE L1 0 6582 6356 1 780 325 109 31 0 chr3 25583914 25583978 -134015805 + (TG)n Simple_repeat Simple_repeat 2 67 0 1 780 240 285 23 8 chr3 25584433 25584564 -134015219 + (TA)n Simple_repeat Simple_repeat 2 134 0 1 780 2965 231 33 22 chr3 25584702 25585425 -134014358 + Lx5 LINE L1 6317 7047 -3 1 780 538 300 7 0 chr3 25585624 25585764 -134014019 - B1_Mur1 SINE Alu -7 142 2 1 780 343 364 5 19 chr3 25585854 25585994 -134013789 + PB1D7 SINE Alu 1 136 -13 1 780 401 290 191 46 chr3 25588735 25589064 -134010719 + MTEb LTR MaLR 4 380 -4 1 780 231 333 8 23 chr3 25590898 25591027 -134008756 + CT-rich Low_complexity Low_complexity 2 128 0 1 780 1206 271 43 43 chr3 25591639 25592013 -134007770 + MTEb LTR MaLR 3 376 -3 1 780 29 84 0 0 chr3 25593053 25593124 -134006659 + AT_rich Low_complexity Low_complexity 1 71 0 1 780 459 278 56 15 chr3 25594913 25595110 -134004673 + L1MA5 LINE L1 6061 6265 -35 1 780 212 371 56 0 chr3 25595485 25595574 -134004209 - ID_B1 SINE B4 -99 125 32 1 780 320 369 93 7 chr3 25595900 25596050 -134003733 - LTR88c LTR Genie? -461 401 239 1 780 243 136 0 78 chr3 25596444 25596508 -134003275 + CT-rich Low_complexity Low_complexity 2 60 0 1 780 645 14 0 0 chr3 25596509 25596583 -134003200 + (TTTCC)n Simple_repeat Simple_repeat 1 74 0 1 780 978 68 20 7 chr3 25596584 25596732 -134003051 + (TTTC)n Simple_repeat Simple_repeat 3 152 0 1 780 1146 288 58 36 chr3 25597121 25597485 -134002298 - MTE2b LTR MaLR -7 372 1 1 780 225 370 54 23 chr3 25597497 25597627 -134002156 + MLT1A LTR MaLR 119 252 -122 1 780 4844 79 1 8 chr3 25597982 25598636 -134001147 + L1Md_F2 LINE L1 5933 6582 0 1 780 267 370 47 0 chr3 25599001 25599128 -134000655 - MIRb SINE MIR -48 220 88 1 780 6838 84 14 6 chr3 25599858 25601360 -133998423 + L1_Mus1 LINE L1 5054 6567 0 1 780 636 209 70 0 chr3 25601577 25601692 -133998091 + B3 SINE B2 8 130 -86 1 780 328 312 26 0 chr3 25602743 25602820 -133996963 - Charlie12 DNA MER1_type -2794 79 1 1 780 678 333 48 30 chr3 25603465 25603832 -133995951 - Lx7 LINE L1 -251 7222 6855 1 780 296 77 19 0 chr3 25603832 25603884 -133995899 + (TG)n Simple_repeat Simple_repeat 1 53 0 1 780 678 332 50 31 chr3 25603884 25604020 -133995763 - Lx7 LINE L1 -842 6854 6699 1 780 21 0 0 0 chr3 25604264 25604285 -133995498 + AT_rich Low_complexity Low_complexity 1 21 0 1 780 293 0 27 0 chr3 25604285 25604322 -133995461 + (TCTA)n Simple_repeat Simple_repeat 4 41 0 1 780 708 307 32 43 chr3 25606733 25607015 -133992768 + B4A SINE B4 1 279 -13 1 780 23 0 0 0 chr3 25607883 25607906 -133991877 + AT_rich Low_complexity Low_complexity 1 23 0 1 780 185 211 19 0 chr3 25608485 25608537 -133991246 + (TA)n Simple_repeat Simple_repeat 2 54 0 1 780 891 113 7 0 chr3 25609481 25609623 -133990160 - L1_Mus2 LINE L1 0 6566 6424 1 780 2795 85 3 3 chr3 25609624 25610015 -133989768 + L1_Mm LINE L1 5345 5735 -148 1 780 367 316 114 61 chr3 25610262 25610508 -133989275 + MLT1A LTR MaLR 116 374 0 1 780 528 292 96 53 chr3 25610726 25610833 -133988950 + B4A SINE B4 97 211 -81 1 780 4437 127 65 9 chr3 25610833 25611599 -133988184 - RMER17D2 LTR ERVK 0 809 1 1 780 528 292 96 53 chr3 25611599 25611679 -133988104 + B4A SINE B4 212 291 -1 1 780 243 0 0 0 chr3 25611702 25611729 -133988054 + (CA)n Simple_repeat Simple_repeat 2 28 0 1 780 747 22 0 0 chr3 25611729 25611818 -133987965 + (GA)n Simple_repeat Simple_repeat 2 90 0 1 780 531 272 86 29 chr3 25611837 25612011 -133987772 + RMER13B LTR ERVK 5 188 -720 1 780 961 261 28 64 chr3 25612011 25612368 -133987415 + RLTR26 LTR ERVK 299 642 0 1 780 340 319 22 22 chr3 25612993 25613131 -133986652 - B1_Mus1 SINE Alu 0 148 11 1 780 429 321 0 3 chr3 25613496 25613630 -133986153 + B1_Mur3 SINE Alu 17 149 0 1 780 600 312 43 75 chr3 25613705 25614051 -133985732 - MLT1B LTR MaLR -14 376 42 1 780 764 259 30 40 chr3 25614779 25614980 -133984803 - ID_B1 SINE B4 -2 222 24 1 780 324 280 53 11 chr3 25617224 25617318 -133982465 - MER5A1 DNA MER1_type -68 98 1 1 780 786 284 160 21 chr3 25617688 25618019 -133981764 + MTEa LTR MaLR 3 379 0 1 780 228 35 0 0 chr3 25618211 25618240 -133981543 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1 780 203 273 30 15 chr3 25618392 25618459 -133981324 - MER5B DNA MER1_type 0 178 111 1 780 324 309 70 120 chr3 25618743 25618901 -133980882 + B4A SINE B4 6 155 -137 1 780 411 83 0 0 chr3 25619584 25619644 -133980139 + (TG)n Simple_repeat Simple_repeat 1 60 0 1 780 299 352 51 15 chr3 25619646 25619920 -133979863 - B4A SINE B4 -8 284 1 1 780 443 277 78 6 chr3 25620676 25620843 -133978940 - MARNA DNA Mariner -231 355 177 1 780 243 229 0 0 chr3 25621966 25622027 -133977756 + (TA)n Simple_repeat Simple_repeat 1 61 0 1 780 252 0 0 0 chr3 25622027 25622055 -133977728 + (TG)n Simple_repeat Simple_repeat 1 28 0 1 780 25 31 0 0 chr3 25622584 25622616 -133977167 + AT_rich Low_complexity Low_complexity 1 32 0 1 780 461 328 8 0 chr3 25624045 25624167 -133975616 - RSINE1 SINE B4 -37 128 6 1 780 515 287 70 25 chr3 25624202 25624376 -133975407 - MER3 DNA MER1_type 0 209 26 1 780 2838 56 0 3 chr3 25624376 25624733 -133975050 - L1_Mus1 LINE L1 -1 6566 6211 1 780 515 287 70 25 chr3 25624733 25624758 -133975025 - MER3 DNA MER1_type -184 25 1 1 780 759 298 9 23 chr3 25624907 25625127 -133974656 + B4 SINE B4 8 224 -68 1 780 388 312 96 59 chr3 25625140 25625412 -133974371 + B4 SINE B4 3 284 -8 1 780 180 77 0 0 chr3 25625584 25625610 -133974173 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 1 780 1055 76 7 7 chr3 25625612 25625758 -133974025 - B1_Mm SINE Alu 0 147 2 1 780 331 301 71 0 chr3 25625856 25625969 -133973814 - Lx8 LINE L1 -638 6835 6715 1 780 21 36 0 0 chr3 25626258 25626286 -133973497 + AT_rich Low_complexity Low_complexity 1 28 0 1 780 2626 44 0 0 chr3 25626820 25627138 -133972645 + L1Md_F2 LINE L1 6252 6569 -13 1 780 336 285 220 9 chr3 25627922 25628145 -133971638 + Lx8 LINE L1 7200 7469 -4 1 780 381 22 0 0 chr3 25628244 25628290 -133971493 + (CA)n Simple_repeat Simple_repeat 2 47 0 1 780 194 62 31 0 chr3 25628317 25628349 -133971434 + (CAAA)n Simple_repeat Simple_repeat 3 35 0 1 780 188 35 35 0 chr3 25628479 25628508 -133971275 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 1 780 239 282 31 69 chr3 25628509 25628669 -133971114 - Lx7 LINE L1 -400 7296 7143 1 780 216 0 0 0 chr3 25630889 25630913 -133968870 + (CAAAAA)n Simple_repeat Simple_repeat 2 25 0 2 780 261 0 0 0 chr3 25631534 25631563 -133968220 + (A)n Simple_repeat Simple_repeat 1 29 0 2 780 323 352 41 68 chr3 25631564 25631924 -133967859 - MLT1C LTR MaLR -27 363 24 2 780 546 298 152 14 chr3 25632500 25632711 -133967072 + ORR1D2 LTR MaLR 1 240 -130 2 780 493 264 39 31 chr3 25633850 25633979 -133965804 - RSINE1 SINE B4 -33 132 3 2 780 1872 138 77 3 chr3 25634118 25634431 -133965352 - Lx2B LINE L1 -15 6985 6650 2 780 3212 148 58 2 chr3 25634432 25635002 -133964781 + Lx2B LINE L1 6060 6661 -339 2 780 231 125 0 0 chr3 25635034 25635074 -133964709 + (TG)n Simple_repeat Simple_repeat 2 41 0 2 780 574 256 0 8 chr3 25635108 25635234 -133964549 - B3A SINE B2 -73 125 1 2 780 242 299 77 55 chr3 25636861 25637134 -133962649 + L1M5 LINE L1 5606 5884 -240 2 780 3495 198 28 6 chr3 25637137 25637814 -133961969 + RLTR17 LTR ERVK 1 692 0 2 780 219 387 40 60 chr3 25638494 25638945 -133960838 + L2c LINE L2 2139 2580 -839 2 780 471 35 0 0 chr3 25639350 25639407 -133960376 + (TG)n Simple_repeat Simple_repeat 2 58 0 2 780 213 356 51 17 chr3 25639436 25639553 -133960230 + L2c LINE L2 3262 3382 -5 2 780 1773 322 84 26 chr3 25639807 25640113 -133959670 + L1M3 LINE L1 3090 3398 -2742 2 780 2567 112 27 20 chr3 25640113 25640514 -133959269 + Lx3_Mus LINE L1 6606 7009 0 2 780 1773 322 84 26 chr3 25640514 25642183 -133957600 + L1M3 LINE L1 3399 5179 -961 2 780 243 146 0 0 chr3 25642183 25642224 -133957559 + (A)n Simple_repeat Simple_repeat 1 41 0 2 780 755 243 130 5 chr3 25642310 25642525 -133957258 + Lx4B LINE L1 6779 7020 -38 2 780 315 65 0 0 chr3 25642544 25642590 -133957193 + (CAAT)n Simple_repeat Simple_repeat 2 47 0 2 780 222 118 0 0 chr3 25642801 25642835 -133956948 + (ATG)n Simple_repeat Simple_repeat 3 36 0 2 780 198 103 0 0 chr3 25643071 25643100 -133956683 + (CAA)n Simple_repeat Simple_repeat 2 30 0 2 780 2664 253 48 14 chr3 25643137 25643782 -133956001 + Lx6 LINE L1 6786 7452 -8 2 780 43 20 0 0 chr3 25645097 25645147 -133954636 + AT_rich Low_complexity Low_complexity 1 50 0 2 780 21 57 0 0 chr3 25646046 25646081 -133953702 + AT_rich Low_complexity Low_complexity 1 35 0 2 780 344 318 46 13 chr3 25646647 25646800 -133952983 - MER5A DNA MER1_type -28 161 4 2 780 477 0 0 0 chr3 25647693 25647746 -133952037 + (TG)n Simple_repeat Simple_repeat 2 54 0 2 780 4056 105 18 10 chr3 25648213 25648838 -133950945 + L1_Mus3 LINE L1 5990 6619 -19 2 780 6993 40 0 4 chr3 25648823 25649666 -133950117 + L1Md_F2 LINE L1 5731 6570 -12 2 780 23 0 0 0 chr3 25649686 25649709 -133950074 + AT_rich Low_complexity Low_complexity 1 23 0 2 780 365 273 132 0 chr3 25649779 25649900 -133949883 - MIR SINE MIR -121 141 5 2 780 22 35 0 0 chr3 25651076 25651105 -133948678 + AT_rich Low_complexity Low_complexity 1 29 0 2 780 567 0 0 0 chr3 25651931 25651994 -133947789 + (TC)n Simple_repeat Simple_repeat 2 64 0 2 780 794 191 7 0 chr3 25652012 25652153 -133947630 - B1_Mur3 SINE Alu -6 143 2 2 780 462 379 79 11 chr3 25654358 25654737 -133945046 + Lx8 LINE L1 6815 7219 -254 2 780 963 26 0 0 chr3 25655170 25655284 -133944499 + (TC)n Simple_repeat Simple_repeat 1 114 0 2 780 1503 343 96 11 chr3 25655308 25656090 -133943693 + Lx8 LINE L1 6555 7402 -71 2 780 307 306 121 34 chr3 25656878 25657027 -133942756 + MIR SINE MIR 101 262 0 2 780 303 279 80 20 chr3 25657738 25657888 -133941895 + L1M6 LINE L1 46 204 -6292 2 780 492 18 0 0 chr3 25659334 25659391 -133940392 + (TG)n Simple_repeat Simple_repeat 2 58 0 2 780 21 0 0 0 chr3 25662095 25662116 -133937667 + AT_rich Low_complexity Low_complexity 1 21 0 2 780 1033 333 22 44 chr3 25662321 25662732 -133937051 + Lx8 LINE L1 6824 7225 -248 2 780 369 341 30 65 chr3 25663662 25663766 -133936017 + Cheshire DNA MER1_type 7 98 -2322 2 780 6325 48 1 21 chr3 25663766 25664584 -133935199 - L1Md_F2 LINE L1 0 6582 5781 2 780 369 341 30 65 chr3 25664584 25664742 -133935041 + Cheshire DNA MER1_type 99 260 -2160 2 780 550 294 0 0 chr3 25665942 25666078 -133933705 - B1F2 SINE Alu -9 140 5 2 780 238 246 132 14 chr3 25666155 25666249 -133933534 + ID4 SINE ID 9 110 -42 2 780 605 320 85 12 chr3 25666910 25667157 -133932626 - B4 SINE B4 -23 269 5 2 780 1263 245 80 42 chr3 25668535 25668935 -133930848 - Lx6 LINE L1 -1135 6325 5911 2 780 1031 250 136 18 chr3 25668953 25669291 -133930492 + Lx6 LINE L1 6847 7224 -236 2 780 877 203 118 10 chr3 25669291 25669495 -133930288 - URR1A DNA MER1_type 0 226 1 2 780 283 294 29 19 chr3 25669568 25669672 -133930111 + Lx7 LINE L1 7539 7643 -53 2 780 2205 206 84 12 chr3 25670801 25671054 -133928729 - RMER6A LTR ERVK 0 756 503 2 780 594 39 0 0 chr3 25671054 25671131 -133928652 + (TC)n Simple_repeat Simple_repeat 2 78 0 2 780 2205 206 84 12 chr3 25671131 25671388 -133928395 - RMER6A LTR ERVK -254 502 210 2 780 287 257 142 9 chr3 25671319 25671425 -133928358 - B4A SINE B4 -39 253 134 2 780 270 0 0 0 chr3 25672006 25672036 -133927747 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 2 780 1021 106 0 21 chr3 25672039 25672183 -133927600 - B1_Mus1 SINE Alu -7 141 1 2 780 198 0 0 0 chr3 25674787 25674809 -133924974 + (TG)n Simple_repeat Simple_repeat 1 22 0 2 780 1104 59 0 0 chr3 25674809 25674961 -133924822 + (GA)n Simple_repeat Simple_repeat 1 153 0 2 780 455 107 13 0 chr3 25678193 25678268 -133921515 + (TAGA)n Simple_repeat Simple_repeat 3 78 0 2 780 406 310 103 6 chr3 25678968 25679124 -133920659 - MLT1I LTR MaLR -236 175 5 2 780 226 336 130 20 chr3 25679316 25679462 -133920321 - RSINE1 SINE B4 0 165 4 2 780 34 0 0 0 chr3 25679748 25679782 -133920001 + AT_rich Low_complexity Low_complexity 1 34 0 2 780 497 283 0 19 chr3 25679866 25679974 -133919809 - B3A SINE B2 -92 106 1 2 780 279 196 18 18 chr3 25680015 25680129 -133919654 + CT-rich Low_complexity Low_complexity 2 115 0 2 780 23 33 0 0 chr3 25680393 25680423 -133919360 + AT_rich Low_complexity Low_complexity 1 30 0 2 780 330 175 38 0 chr3 25682296 25682376 -133917407 - Lx9 LINE L1 -46 7598 7516 2 780 441 0 0 0 chr3 25682388 25682437 -133917346 + (TG)n Simple_repeat Simple_repeat 2 50 0 2 780 933 150 19 0 chr3 25682437 25682597 -133917186 - Lx9 LINE L1 -181 7463 7301 2 780 472 246 38 15 chr3 25682624 25682756 -133917027 - Lx9 LINE L1 -405 7239 7105 2 780 1055 251 86 107 chr3 25683088 25683472 -133916311 - MTE2a LTR MaLR -3 376 1 2 780 782 311 20 34 chr3 25684441 25684734 -133915049 + B4A SINE B4 2 290 -2 2 780 600 138 0 0 chr3 25684775 25684905 -133914878 + (TC)n Simple_repeat Simple_repeat 1 130 0 2 780 390 322 27 20 chr3 25685302 25685451 -133914332 - MTEa LTR MaLR -12 367 218 2 780 560 114 26 26 chr3 25685459 25685612 -133914171 + (CAGA)n Simple_repeat Simple_repeat 4 156 0 2 780 515 323 35 5 chr3 25685624 25685826 -133913957 - MTEa LTR MaLR -156 223 16 2 780 860 301 70 93 chr3 25685826 25686211 -133913572 - MTE2a LTR MaLR -2 377 2 2 780 1892 194 37 42 chr3 25686750 25687280 -133912503 + RLTR31A_Mm LTR ERVK 1 561 0 2 780 798 208 116 10 chr3 25687497 25687696 -133912087 - Lx5 LINE L1 -3 7047 6828 2 780 1789 238 2 44 chr3 25687938 25688390 -133911393 + RMER10A LTR ERVL 3 435 -7 2 780 1647 203 14 26 chr3 25688839 25689026 -133910757 + RMER17C LTR ERVK 1 187 -223 2 780 1067 68 0 13 chr3 25689026 25689176 -133910607 + (TTCTC)n Simple_repeat Simple_repeat 5 152 0 2 780 1647 203 14 26 chr3 25689176 25689403 -133910380 + RMER17C LTR ERVK 188 410 0 2 780 228 122 0 0 chr3 25689713 25689754 -133910029 + (TG)n Simple_repeat Simple_repeat 1 41 0 2 780 213 317 12 12 chr3 25689930 25690013 -133909770 - B4A SINE B4 -208 84 2 2 781 36 23 0 0 chr3 25690162 25690205 -133909578 + AT_rich Low_complexity Low_complexity 1 43 0 2 781 26 0 0 0 chr3 25690297 25690323 -133909460 + AT_rich Low_complexity Low_complexity 1 26 0 2 781 368 103 0 37 chr3 25691056 25691137 -133908646 + (T)n Simple_repeat Simple_repeat 1 78 0 2 781 242 375 72 56 chr3 25691137 25691293 -133908490 + L2a LINE L2 2958 3120 -306 2 781 2648 73 0 0 chr3 25691293 25691636 -133908147 - L1_Mus1 LINE L1 0 6567 6225 2 781 242 375 72 56 chr3 25691636 25691674 -133908109 + L2a LINE L2 3121 3155 -271 2 781 226 0 0 56 chr3 25691982 25692018 -133907765 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 2 781 1022 279 101 6 chr3 25692245 25692591 -133907192 + MTE2b LTR MaLR 1 379 0 2 781 26 0 0 0 chr3 25693268 25693294 -133906489 + AT_rich Low_complexity Low_complexity 1 26 0 2 781 493 271 42 94 chr3 25694276 25694488 -133905295 + RMER20B LTR ERVK 398 598 -29 2 781 21 0 0 0 chr3 25694732 25694753 -133905030 + AT_rich Low_complexity Low_complexity 1 21 0 2 781 571 296 32 16 chr3 25694785 25694974 -133904809 + B3A SINE B2 1 192 -6 2 781 277 258 0 0 chr3 25695229 25695291 -133904492 + ID4_ SINE ID 2 63 -20 2 781 307 246 104 90 chr3 25695357 25695491 -133904292 - RMER20B LTR ERVK -259 368 233 2 781 524 116 12 0 chr3 25695790 25695876 -133903907 + (TCTA)n Simple_repeat Simple_repeat 4 90 0 2 781 327 342 48 42 chr3 25697282 25697447 -133902336 + B4A SINE B4 113 278 -14 2 781 23 0 0 0 chr3 25697601 25697624 -133902159 + AT_rich Low_complexity Low_complexity 1 23 0 2 781 365 336 118 29 chr3 25698349 25698932 -133900851 - Charlie2b DNA MER1_type -326 2456 1822 2 781 281 239 22 33 chr3 25699518 25699609 -133900174 + GA-rich Low_complexity Low_complexity 1 90 0 2 781 540 0 0 0 chr3 25699832 25699892 -133899891 + (TA)n Simple_repeat Simple_repeat 2 61 0 2 781 227 292 188 0 chr3 25699911 25700007 -133899776 + PB1D7 SINE Alu 5 118 -2 2 781 452 139 58 19 chr3 25700134 25700237 -133899546 + Lx9 LINE L1 7394 7500 -144 2 781 263 140 20 0 chr3 25700237 25700287 -133899496 + (CA)n Simple_repeat Simple_repeat 2 52 0 2 781 202 247 21 0 chr3 25700265 25700358 -133899425 + (TA)n Simple_repeat Simple_repeat 1 95 0 2 781 3689 94 0 2 chr3 25700576 25701085 -133898698 - L1_Mm LINE L1 -155 5728 5221 3 781 355 187 71 12 chr3 25701092 25701260 -133898523 + (TA)n Simple_repeat Simple_repeat 2 179 0 3 781 301 198 11 11 chr3 25701602 25701694 -133898089 + (TA)n Simple_repeat Simple_repeat 2 93 0 3 781 260 248 267 0 chr3 25701840 25701941 -133897842 - RSINE1 SINE B4 -35 130 3 3 781 342 45 0 0 chr3 25704009 25704053 -133895730 + (TG)n Simple_repeat Simple_repeat 1 44 0 3 781 717 103 0 0 chr3 25704053 25704178 -133895605 + (GA)n Simple_repeat Simple_repeat 1 126 0 3 781 739 265 29 0 chr3 25704228 25704432 -133895351 + B3 SINE B2 2 211 -5 3 781 328 273 57 57 chr3 25705803 25705962 -133893821 - MIRm SINE MIR -95 181 23 3 781 193 133 0 0 chr3 25707376 25707406 -133892377 - MIRc SINE MIR -110 158 129 3 781 238 179 29 15 chr3 25707994 25708062 -133891721 + A-rich Low_complexity Low_complexity 6 74 0 3 781 231 114 0 0 chr3 25708937 25708972 -133890811 + (TCTCCC)n Simple_repeat Simple_repeat 2 36 0 3 781 22 0 0 0 chr3 25709906 25709928 -133889855 + AT_rich Low_complexity Low_complexity 1 22 0 3 781 225 302 16 16 chr3 25711395 25711459 -133888324 + RSINE1 SINE B4 4 67 -98 3 781 360 0 0 0 chr3 25711498 25711538 -133888245 + (CA)n Simple_repeat Simple_repeat 2 41 0 3 781 343 368 27 14 chr3 25711695 25711841 -133887942 + MIRb SINE MIR 2 149 -119 3 781 473 0 18 0 chr3 25716449 25716506 -133883277 + (GA)n Simple_repeat Simple_repeat 1 58 0 3 781 929 285 48 118 chr3 25717018 25717614 -133882169 + Lx5 LINE L1 6523 7456 -4 3 781 282 212 33 58 chr3 25717908 25718028 -133881755 + MamRep4096 DNA hAT? 60 176 -250 3 781 545 45 45 0 chr3 25718672 25718761 -133881022 + (TA)n Simple_repeat Simple_repeat 2 94 0 3 781 1082 75 7 0 chr3 25718878 25719024 -133880759 + B1_Mus1 SINE Alu 2 148 0 3 781 405 177 0 0 chr3 25719415 25719494 -133880289 + (TA)n Simple_repeat Simple_repeat 1 79 0 3 781 254 316 20 20 chr3 25722222 25722322 -133877461 + MLT1E2 LTR MaLR 1 100 -527 3 781 528 284 174 0 chr3 25724681 25724836 -133874947 + ID_B1 SINE B4 43 224 0 3 781 1220 292 52 13 chr3 25724894 25725275 -133874508 - Lx6 LINE L1 -1093 6367 5972 3 781 3211 262 77 4 chr3 25725272 25726113 -133873670 + Lx6 LINE L1 6558 7460 0 3 781 351 44 0 0 chr3 25728880 25728925 -133870858 + (CA)n Simple_repeat Simple_repeat 1 45 0 3 781 341 324 84 0 chr3 25729087 25729229 -133870554 - RSINE1 SINE B4 -6 159 6 3 781 375 339 25 25 chr3 25730405 25730523 -133869260 + RSINE1 SINE B4 19 136 -29 3 781 27 73 0 0 chr3 25731469 25731524 -133868259 + AT_rich Low_complexity Low_complexity 1 55 0 3 781 444 135 0 0 chr3 25731672 25731746 -133868037 + (GGA)n Simple_repeat Simple_repeat 3 76 0 3 781 820 53 9 9 chr3 25731746 25731861 -133867922 + (GAAA)n Simple_repeat Simple_repeat 3 117 0 3 781 26 0 0 0 chr3 25735676 25735702 -133864081 + AT_rich Low_complexity Low_complexity 1 26 0 3 781 4219 96 28 26 chr3 25735702 25736353 -133863430 + Lx LINE L1 5988 6639 -15 3 781 486 144 11 22 chr3 25736456 25736548 -133863235 + RMER16 LTR ERVK 318 408 -125 3 781 378 0 0 0 chr3 25736563 25736605 -133863178 + (TAAA)n Simple_repeat Simple_repeat 3 44 0 3 781 3032 122 60 2 chr3 25736657 25737157 -133862626 + Lx3B LINE L1 6443 6971 -2 3 781 195 42 0 0 chr3 25737162 25737186 -133862597 + (TAA)n Simple_repeat Simple_repeat 2 25 0 3 781 938 109 0 7 chr3 25737186 25737333 -133862450 + (GAA)n Simple_repeat Simple_repeat 2 147 0 3 781 316 305 126 40 chr3 25737337 25737535 -133862248 + B3 SINE B2 2 216 0 3 781 574 282 72 33 chr3 25739123 25739303 -133860480 + Lx8 LINE L1 7155 7341 -132 3 781 249 321 0 27 chr3 25739570 25739682 -133860101 + Lx8 LINE L1 7359 7467 -6 3 781 22 35 0 0 chr3 25739686 25739715 -133860068 + AT_rich Low_complexity Low_complexity 1 29 0 3 781 1712 264 57 32 chr3 25740076 25740570 -133859213 + Lx6 LINE L1 6935 7440 -20 3 781 23 33 0 0 chr3 25740570 25740600 -133859183 + AT_rich Low_complexity Low_complexity 1 30 0 3 781 27 62 0 0 chr3 25740742 25740790 -133858993 + AT_rich Low_complexity Low_complexity 1 48 0 3 781 522 305 107 34 chr3 25740919 25741221 -133858562 - L1MC4a LINE L1 -75 7807 7491 3 781 297 0 0 0 chr3 25741221 25741254 -133858529 + (TTG)n Simple_repeat Simple_repeat 3 35 0 3 781 522 305 107 34 chr3 25741254 25741511 -133858272 - L1MC4a LINE L1 -392 7490 7208 3 781 378 0 0 0 chr3 25741638 25741680 -133858103 + (TA)n Simple_repeat Simple_repeat 2 43 0 3 781 307 125 0 0 chr3 25743242 25743290 -133856493 + HAL1-3A_ME LINE L1 1970 2017 -841 3 781 566 222 8 4 chr3 25743292 25743560 -133856223 + (CA)n Simple_repeat Simple_repeat 1 269 0 3 781 574 156 0 76 chr3 25744155 25744273 -133855510 + MTB_Mm LTR MaLR 1 109 -298 3 781 2194 157 85 3 chr3 25744366 25744755 -133855028 + MTC LTR MaLR 1 421 0 3 781 315 0 0 0 chr3 25745562 25745597 -133854186 + (TC)n Simple_repeat Simple_repeat 2 36 0 3 781 1139 89 6 0 chr3 25745608 25745787 -133853996 + (TG)n Simple_repeat Simple_repeat 1 180 0 3 781 1341 74 0 0 chr3 25745801 25746198 -133853585 + (TG)n Simple_repeat Simple_repeat 1 397 0 3 781 25 0 0 0 chr3 25746513 25746538 -133853245 + AT_rich Low_complexity Low_complexity 1 25 0 3 781 818 227 87 19 chr3 25748159 25748366 -133851417 - RMER1C Other Other -20 1322 1102 3 781 605 278 4 102 chr3 25748383 25748630 -133851153 - RMER1C Other Other -652 690 491 3 781 7833 63 1 7 chr3 25750459 25752078 -133847705 - L1Md_F2 LINE L1 -11 6571 4963 3 781 487 354 48 0 chr3 25752089 25752236 -133847547 + RSINE1 SINE B4 10 163 -2 3 781 213 39 0 0 chr3 25752804 25752830 -133846953 + (TG)n Simple_repeat Simple_repeat 1 26 0 3 781 628 224 6 11 chr3 25752849 25753025 -133846758 + CT-rich Low_complexity Low_complexity 2 176 0 3 781 1232 247 76 38 chr3 25753048 25753444 -133846339 + RMER1C Other Other 786 1196 -146 3 781 402 320 65 26 chr3 25756130 25756284 -133843499 - RSINE1 SINE B4 0 165 6 3 781 201 39 0 0 chr3 25756329 25756355 -133843428 + (A)n Simple_repeat Simple_repeat 1 26 0 3 781 6572 120 19 14 chr3 25756569 25757601 -133842182 + Lx2B LINE L1 5877 6913 -87 3 781 1183 203 52 3 chr3 25758100 25758406 -133841377 + Lx9 LINE L1 7323 7643 -1 3 781 411 99 59 0 chr3 25759235 25759336 -133840447 + (TA)n Simple_repeat Simple_repeat 1 107 0 3 781 1277 265 60 29 chr3 25759881 25760366 -133839417 + RCHARR1 DNA MER1_type 162 661 -313 3 781 272 272 49 129 chr3 25760363 25760587 -133839196 + RCHARR1 DNA MER1_type 769 974 0 3 781 636 234 0 62 chr3 25761129 25761275 -133838508 - B1_Mus2 SINE Alu 0 147 11 3 781 461 345 20 26 chr3 25761490 25761642 -133838141 + RSINE1 SINE B4 3 153 -12 3 781 238 262 0 16 chr3 25761650 25761729 -133838054 + (CA)n Simple_repeat Simple_repeat 1 77 0 3 781 31 26 0 0 chr3 25761731 25761769 -133838014 + AT_rich Low_complexity Low_complexity 1 38 0 3 781 747 284 10 14 chr3 25763779 25763986 -133835797 - B3 SINE B2 -10 206 1 3 781 279 0 0 0 chr3 25764165 25764196 -133835587 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 3 781 520 300 0 0 chr3 25764434 25764564 -133835219 + B3 SINE B2 5 134 -82 3 781 410 128 53 0 chr3 25764587 25764701 -133835082 - L1_Mus3 LINE L1 0 6638 6540 3 781 801 323 88 5 chr3 25766934 25767366 -133832417 + Lx8 LINE L1 6876 7343 -130 3 781 489 165 0 0 chr3 25767367 25767464 -133832319 + (TG)n Simple_repeat Simple_repeat 1 97 0 3 781 213 39 0 0 chr3 25767543 25767569 -133832214 + (TATG)n Simple_repeat Simple_repeat 3 28 0 3 781 285 29 0 0 chr3 25768476 25768510 -133831273 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 3 781 273 157 47 24 chr3 25768538 25768623 -133831160 + GA-rich Low_complexity Low_complexity 5 91 0 3 781 531 98 0 0 chr3 25768645 25768737 -133831046 + (GA)n Simple_repeat Simple_repeat 1 92 0 3 781 435 287 16 16 chr3 25768750 25768874 -133830909 + ID_B1 SINE B4 90 213 -11 3 781 546 16 0 0 chr3 25768875 25768938 -133830845 + (CA)n Simple_repeat Simple_repeat 1 63 0 3 781 388 256 0 17 chr3 25769750 25769869 -133829914 - Lx9 LINE L1 -652 6992 6876 3 781 1358 248 64 31 chr3 25769851 25770301 -133829482 + Lx9 LINE L1 7171 7635 -9 3 781 3157 126 9 0 chr3 25770717 25771184 -133828599 + Lx2 LINE L1 6175 6645 -352 3 781 628 181 165 0 chr3 25771182 25771315 -133828468 + Lx2 LINE L1 6775 6929 -68 3 781 827 311 96 27 chr3 25772638 25773474 -133826309 - L1_Rod LINE L1 -1447 4699 3815 3 781 369 319 111 6 chr3 25773506 25773686 -133826097 - B3 SINE B2 -17 199 1 3 781 360 214 121 28 chr3 25773737 25773895 -133825888 - L1_Rod LINE L1 -2288 3852 3688 3 781 459 0 0 0 chr3 25774966 25775017 -133824766 + (CA)n Simple_repeat Simple_repeat 2 52 0 3 781 382 197 62 2 chr3 25775417 25775571 -133824212 + Lx LINE L1 6024 6087 -567 3 781 3040 94 21 5 chr3 25775572 25776008 -133823775 + L1_Mus4 LINE L1 6187 6629 -7 3 781 485 311 58 38 chr3 25776077 25776585 -133823198 + L1MA4 LINE L1 5436 5975 -325 3 781 259 371 0 11 chr3 25777188 25777278 -133822505 + B3 SINE B2 60 148 -68 3 781 405 70 0 0 chr3 25777296 25777353 -133822430 + (CA)n Simple_repeat Simple_repeat 2 58 0 3 781 25 0 0 0 chr3 25777353 25777378 -133822405 + AT_rich Low_complexity Low_complexity 1 25 0 3 781 3695 34 2 0 chr3 25777505 25777947 -133821836 + L1Md_F2 LINE L1 5143 5585 -298 3 781 7784 46 24 4 chr3 25777948 25778923 -133820860 + L1Md_F2 LINE L1 5587 6580 -2 3 781 1101 108 0 0 chr3 25778935 25779083 -133820700 + B1_Mus1 SINE Alu 1 148 0 3 781 420 118 0 0 chr3 25779086 25779154 -133820629 + (A)n Simple_repeat Simple_repeat 1 68 0 3 781 254 355 131 22 chr3 25779854 25780076 -133819707 - MIR SINE MIR -2 260 15 3 781 394 287 188 27 chr3 25780175 25780361 -133819422 - B3 SINE B2 0 216 1 3 781 576 91 0 0 chr3 25780988 25781076 -133818707 + (CA)n Simple_repeat Simple_repeat 1 88 0 3 781 222 37 0 0 chr3 25781081 25781108 -133818675 + (GA)n Simple_repeat Simple_repeat 2 28 0 3 781 304 40 0 123 chr3 25781637 25781694 -133818089 - L1_Mus2 LINE L1 0 6566 6517 4 781 422 357 13 30 chr3 25781724 25781958 -133817825 + Lx8 LINE L1 7169 7398 -75 4 781 426 339 38 164 chr3 25782190 25782483 -133817300 + B4A SINE B4 37 292 0 4 781 950 132 0 6 chr3 25782524 25782684 -133817099 + (TTCC)n Simple_repeat Simple_repeat 3 161 0 4 781 1118 29 7 0 chr3 25782686 25782824 -133816959 + (TTTCC)n Simple_repeat Simple_repeat 1 139 0 4 781 1872 68 0 0 chr3 25782824 25783059 -133816724 - L1_Mus1 LINE L1 -72 6495 6261 4 781 215 301 84 0 chr3 25783059 25783142 -133816641 - BC1_Mm scRNA scRNA -57 95 6 4 781 561 42 0 0 chr3 25783419 25783491 -133816292 + (TCTA)n Simple_repeat Simple_repeat 2 73 0 4 781 247 280 271 31 chr3 25785180 25785309 -133814474 + RSINE1 SINE B4 2 161 -4 4 781 1223 85 11 0 chr3 25785921 25786098 -133813685 + (TTCC)n Simple_repeat Simple_repeat 2 180 0 4 781 291 28 0 0 chr3 25786319 25786355 -133813428 + (TG)n Simple_repeat Simple_repeat 1 36 0 4 781 617 94 19 0 chr3 25786357 25786463 -133813320 + (CAGAGA)n Simple_repeat Simple_repeat 2 109 0 4 781 29 0 0 0 chr3 25786625 25786654 -133813129 + AT_rich Low_complexity Low_complexity 1 29 0 4 781 1294 262 63 48 chr3 25786672 25787069 -133812714 - Lx6 LINE L1 -46 7414 7012 4 781 1177 170 8 21 chr3 25787060 25787157 -133812626 - L1_Mur2 LINE L1 -1253 4624 4531 4 781 4124 106 2 2 chr3 25787157 25787741 -133812042 + MT2B2 LTR ERVL 1 584 0 4 781 1177 170 8 21 chr3 25787741 25787877 -133811906 - L1_Mur2 LINE L1 -1347 4530 4394 4 781 963 185 10 0 chr3 25787871 25788076 -133811707 - L1_Mur2 LINE L1 -2152 3725 3519 4 781 25 83 0 0 chr3 25790537 25790597 -133809186 + AT_rich Low_complexity Low_complexity 1 60 0 4 781 655 306 54 9 chr3 25791366 25791587 -133808196 - ORR1E-int LTR MaLR -1349 231 1 4 781 487 332 75 52 chr3 25791591 25791940 -133807843 - ORR1E LTR MaLR -2 357 1 4 781 852 151 14 7 chr3 25792023 25792170 -133807613 + B1_Mus1 SINE Alu 1 148 0 4 781 658 129 6 66 chr3 25792179 25792362 -133807421 + GA-rich Low_complexity Low_complexity 4 175 0 4 781 201 182 0 0 chr3 25792362 25792395 -133807388 + A-rich Low_complexity Low_complexity 1 33 0 4 781 393 244 50 8 chr3 25793189 25793309 -133806474 + MLT2B2 LTR ERVL 24 148 -367 4 781 332 167 71 12 chr3 25793369 25793454 -133806329 - Lx9 LINE L1 -22 7622 7533 4 781 1012 88 0 0 chr3 25793612 25793749 -133806034 - B1_Mus1 SINE Alu -10 138 2 4 781 252 361 74 15 chr3 25793833 25793968 -133805815 + MLT2B2 LTR ERVL 326 468 -87 4 781 287 0 53 0 chr3 25793975 25794013 -133805770 + (TCTCTG)n Simple_repeat Simple_repeat 3 42 0 4 781 267 31 0 0 chr3 25794013 25794044 -133805739 + (CA)n Simple_repeat Simple_repeat 1 32 0 4 781 369 164 0 0 chr3 25794044 25794117 -133805666 + GA-rich Low_complexity Low_complexity 1 73 0 4 781 284 361 83 0 chr3 25795288 25795396 -133804387 + RSINE1 SINE B4 3 119 -46 4 781 369 0 0 0 chr3 25795398 25795439 -133804344 + (CA)n Simple_repeat Simple_repeat 1 41 0 4 781 29 0 0 0 chr3 25796070 25796099 -133803684 + AT_rich Low_complexity Low_complexity 1 29 0 4 781 868 275 76 62 chr3 25796259 25796616 -133803167 + Charlie7 DNA MER1_type 306 667 -1945 4 781 396 224 59 7 chr3 25796768 25796888 -133802895 - Lx9 LINE L1 -1 7643 7517 4 781 279 0 0 0 chr3 25796888 25796919 -133802864 + (CA)n Simple_repeat Simple_repeat 2 32 0 4 781 444 159 49 0 chr3 25796919 25797002 -133802781 - Lx9 LINE L1 -128 7516 7385 4 781 4552 165 107 38 chr3 25797382 25798339 -133801444 + RLTR13D2 LTR ERVK 1 1023 0 4 781 486 83 0 0 chr3 25798427 25798499 -133801284 + (CA)n Simple_repeat Simple_repeat 1 72 0 4 781 387 0 0 0 chr3 25798499 25798541 -133801242 + (GA)n Simple_repeat Simple_repeat 2 44 0 4 781 270 151 0 86 chr3 25800615 25800673 -133799110 + RSINE1 SINE B4 72 124 -41 4 781 275 286 26 13 chr3 25801062 25801140 -133798643 + ORR1E LTR MaLR 281 359 0 4 781 474 18 0 0 chr3 25801349 25801404 -133798379 + (TTTTG)n Simple_repeat Simple_repeat 1 55 0 4 781 799 56 0 9 chr3 25801404 25801512 -133798271 - B1_Mm SINE Alu -13 134 28 4 781 1166 249 10 41 chr3 25801525 25801818 -133797965 + Lx6 LINE L1 7137 7420 -40 4 781 252 257 0 0 chr3 25801818 25801888 -133797895 + A-rich Low_complexity Low_complexity 1 70 0 4 781 207 0 0 0 chr3 25801952 25801975 -133797808 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 4 781 198 0 0 0 chr3 25802881 25802903 -133796880 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 4 781 190 0 32 32 chr3 25803445 25803476 -133796307 + (CAAAAA)n Simple_repeat Simple_repeat 5 35 0 4 781 3483 107 30 24 chr3 25804009 25804547 -133795236 + L1_Mus3 LINE L1 6092 6632 -6 4 781 268 242 18 43 chr3 25805770 25805934 -133793849 - Lx9 LINE L1 0 7644 7485 4 781 891 356 59 51 chr3 25806600 25807257 -133792526 + Lx8 LINE L1 6454 7113 -360 4 781 1582 90 53 8 chr3 25807257 25807503 -133792280 - L1_Mus3 LINE L1 -7 6631 6375 4 781 891 356 59 51 chr3 25807503 25807745 -133792038 + Lx8 LINE L1 7114 7360 -113 4 781 288 0 0 0 chr3 25808268 25808300 -133791483 + (TA)n Simple_repeat Simple_repeat 1 32 0 4 781 880 254 18 14 chr3 25809354 25809577 -133790206 - URR1B DNA MER1_type 0 225 2 4 781 207 0 0 0 chr3 25813029 25813052 -133786731 + (TCTG)n Simple_repeat Simple_repeat 2 24 0 4 781 22 0 0 0 chr3 25813088 25813110 -133786673 + AT_rich Low_complexity Low_complexity 1 22 0 4 781 525 213 37 0 chr3 25813408 25813516 -133786267 - B3 SINE B2 -103 113 2 4 781 22 0 0 0 chr3 25816499 25816521 -133783262 + AT_rich Low_complexity Low_complexity 1 22 0 4 781 288 38 0 19 chr3 25816691 25816745 -133783038 - L1Md_F3 LINE L1 0 6584 6532 4 781 1490 44 0 0 chr3 25816744 25816925 -133782858 + L1Md_F3 LINE L1 6114 6294 -290 4 781 278 285 105 53 chr3 25816931 25817083 -133782700 - B3A SINE B2 -1 197 38 4 781 1842 216 11 3 chr3 25817083 25817450 -133782333 + ORR1C1 LTR MaLR 1 370 -8 4 781 24 0 0 0 chr3 25817867 25817891 -133781892 + AT_rich Low_complexity Low_complexity 1 24 0 4 781 264 313 105 42 chr3 25818240 25818430 -133781353 - B3 SINE B2 -6 210 9 4 781 225 163 0 0 chr3 25819440 25819489 -133780294 + T-rich Low_complexity Low_complexity 1 49 0 4 97 7122 18 2 1 chr3 25820515 25821342 -133778441 - L1Md_A LINE L1 0 6582 5755 4 782 904 19 0 0 chr3 25821350 25821455 -133778328 + L1Md_A LINE L1 373 477 -6247 4 782 22 56 0 0 chr3 25822826 25822862 -133776921 + AT_rich Low_complexity Low_complexity 1 36 0 4 782 201 309 81 81 chr3 25825608 25825756 -133774027 - L2c LINE L2 -3 3384 3237 4 782 26 0 0 0 chr3 25827014 25827040 -133772743 + AT_rich Low_complexity Low_complexity 1 26 0 4 782 216 0 0 0 chr3 25827399 25827423 -133772360 + (T)n Simple_repeat Simple_repeat 1 24 0 4 782 1435 269 86 46 chr3 25827803 25828348 -133771435 + RMER2 LTR ERV1 1 567 0 4 782 645 291 6 16 chr3 25829228 25829410 -133770373 + Lx8 LINE L1 6345 6524 -949 4 782 630 230 36 0 chr3 25829473 25829612 -133770171 - URR1B DNA MER1_type -11 214 71 4 782 935 342 92 22 chr3 25829659 25830215 -133769568 + Lx8 LINE L1 6596 7190 -283 4 782 445 266 12 163 chr3 25830219 25830385 -133769398 + RMER19C LTR ERVK 329 469 -142 4 782 345 152 0 0 chr3 25830389 25830448 -133769335 + RLTR11A LTR ERVK 1 59 -469 4 782 1749 213 38 15 chr3 25830466 25830862 -133768921 + RLTR11A LTR ERVK 107 511 -17 4 782 600 147 122 15 chr3 25830884 25831015 -133768768 + RMER19B LTR ERVK 758 902 0 4 782 22 0 0 0 chr3 25831264 25831286 -133768497 + AT_rich Low_complexity Low_complexity 1 22 0 4 782 450 0 0 0 chr3 25832307 25832357 -133767426 + (TA)n Simple_repeat Simple_repeat 1 50 0 4 782 208 245 0 0 chr3 25833687 25833736 -133766047 + (CATATA)n Simple_repeat Simple_repeat 5 53 0 4 782 764 294 5 5 chr3 25833831 25834019 -133765764 + B3 SINE B2 23 210 -6 4 782 225 94 0 0 chr3 25834343 25834375 -133765408 + (TAGG)n Simple_repeat Simple_repeat 1 32 0 4 782 362 39 19 0 chr3 25834376 25834428 -133765355 + (GA)n Simple_repeat Simple_repeat 2 54 0 4 782 1187 58 18 18 chr3 25834494 25834774 -133765009 + (TAGA)n Simple_repeat Simple_repeat 1 280 0 4 782 327 130 0 0 chr3 25834979 25835033 -133764750 + (TG)n Simple_repeat Simple_repeat 2 55 0 4 782 364 312 39 8 chr3 25835519 25835648 -133764135 - B3 SINE B2 0 216 84 4 782 243 0 0 0 chr3 25835665 25835692 -133764091 + (A)n Simple_repeat Simple_repeat 1 27 0 4 782 238 295 11 133 chr3 25835721 25835811 -133763972 - B3A SINE B2 -119 79 1 4 782 917 324 26 38 chr3 25836746 25837089 -133762694 + MTE2b LTR MaLR 28 366 -13 4 782 228 35 0 0 chr3 25838542 25838571 -133761212 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 4 782 474 159 0 0 chr3 25838649 25838737 -133761046 + (TG)n Simple_repeat Simple_repeat 2 89 0 4 782 618 312 84 22 chr3 25838744 25839019 -133760764 - B4 SINE B4 0 292 1 4 782 407 19 19 0 chr3 25839824 25839876 -133759907 + (TAGA)n Simple_repeat Simple_repeat 4 56 0 4 782 180 143 0 0 chr3 25840095 25840137 -133759646 + (TC)n Simple_repeat Simple_repeat 2 43 0 4 782 480 280 162 35 chr3 25840176 25840435 -133759348 - B4A SINE B4 0 292 1 4 782 894 19 0 0 chr3 25840494 25840598 -133759185 + (TTTCC)n Simple_repeat Simple_repeat 2 105 0 4 782 567 53 0 0 chr3 25840602 25840677 -133759106 + (TTTC)n Simple_repeat Simple_repeat 2 76 0 4 782 26 30 0 0 chr3 25842029 25842062 -133757721 + AT_rich Low_complexity Low_complexity 1 33 0 4 782 361 274 50 33 chr3 25842137 25842258 -133757525 + MTD LTR MaLR 5 127 -292 4 782 381 224 86 24 chr3 25842263 25842411 -133757372 - L1MA6 LINE L1 -360 5940 5785 4 782 1447 185 142 13 chr3 25842470 25842788 -133756995 + ORR1B2 LTR MaLR 1 359 -8 4 782 579 313 11 0 chr3 25843863 25844042 -133755741 - B3A SINE B2 -16 182 2 4 782 652 143 8 60 chr3 25845530 25845664 -133754119 + RMER19C LTR ERVK 1 127 -484 4 782 203 231 15 15 chr3 25845888 25845954 -133753829 + A-rich Low_complexity Low_complexity 5 70 0 4 782 189 107 0 0 chr3 25845994 25846022 -133753761 + (T)n Simple_repeat Simple_repeat 1 28 0 5 782 4300 43 0 0 chr3 25846094 25846609 -133753174 - L1Md_T LINE L1 0 6582 6068 5 782 246 105 0 0 chr3 25848488 25848526 -133751257 + (CA)n Simple_repeat Simple_repeat 2 39 0 5 782 201 39 0 0 chr3 25848527 25848553 -133751230 + (CAT)n Simple_repeat Simple_repeat 1 26 0 5 782 1058 87 0 0 chr3 25848598 25848736 -133751047 + B1_Mus2 SINE Alu 1 138 -9 5 782 347 17 67 0 chr3 25848736 25848796 -133750987 + (CAAAA)n Simple_repeat Simple_repeat 2 65 0 5 782 39 38 0 0 chr3 25849051 25849104 -133750679 + AT_rich Low_complexity Low_complexity 1 53 0 5 782 725 311 14 29 chr3 25849736 25849942 -133749841 - B3A SINE B2 -12 204 1 5 782 1103 255 54 115 chr3 25851082 25851472 -133748311 + MTE2a LTR MaLR 1 366 -13 5 782 261 0 0 0 chr3 25852624 25852653 -133747130 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 5 782 21 0 0 0 chr3 25852670 25852691 -133747092 + AT_rich Low_complexity Low_complexity 1 21 0 5 782 30 69 0 0 chr3 25853065 25853123 -133746660 + AT_rich Low_complexity Low_complexity 1 58 0 5 782 24 32 0 0 chr3 25853174 25853205 -133746578 + AT_rich Low_complexity Low_complexity 1 31 0 5 782 33 43 0 0 chr3 25853594 25853641 -133746142 + AT_rich Low_complexity Low_complexity 1 47 0 5 782 441 257 191 35 chr3 25853748 25853978 -133745805 + Lx9 LINE L1 7069 7334 -310 5 782 309 260 96 13 chr3 25854375 25854531 -133745252 + Lx9 LINE L1 7475 7643 -1 5 782 442 284 207 10 chr3 25856148 25856443 -133743340 - ORR1E LTR MaLR -2 357 5 5 782 13298 102 21 8 chr3 25857022 25860042 -133739741 + Lx3A LINE L1 3919 6977 -4 5 782 801 103 0 0 chr3 25860052 25860169 -133739614 + (GGAA)n Simple_repeat Simple_repeat 1 117 0 5 782 1084 93 0 0 chr3 25860169 25860308 -133739475 + B1_Mus1 SINE Alu 1 139 -9 5 782 958 87 0 26 chr3 25860323 25860476 -133739307 + (GAAA)n Simple_repeat Simple_repeat 2 150 0 5 782 1633 218 63 8 chr3 25861258 25861655 -133738128 - MTD LTR MaLR 0 419 1 5 782 463 358 21 5 chr3 25861736 25861930 -133737853 + ORR1E LTR MaLR 1 197 -162 5 782 282 143 0 0 chr3 25862010 25862059 -133737724 + (TCCC)n Simple_repeat Simple_repeat 4 52 0 5 782 204 125 0 0 chr3 25862378 25862410 -133737373 + (AGGGGG)n Simple_repeat Simple_repeat 2 33 0 5 782 472 29 29 14 chr3 25864717 25864787 -133734996 + (TCTA)n Simple_repeat Simple_repeat 1 71 0 5 782 2883 186 90 17 chr3 25864823 25865410 -133734373 + Lx4B LINE L1 6424 7053 -5 5 782 25 0 0 0 chr3 25867059 25867084 -133732699 + AT_rich Low_complexity Low_complexity 1 25 0 5 782 729 80 71 9 chr3 25867452 25867558 -133732225 + B1_Mm SINE Alu 8 121 -26 5 782 3280 47 7 0 chr3 25867558 25867964 -133731819 + L1Md_F2 LINE L1 6172 6580 -2 5 782 23 33 0 0 chr3 25868141 25868171 -133731612 + AT_rich Low_complexity Low_complexity 1 30 0 5 782 3818 271 67 20 chr3 25868698 25870122 -133729661 - L1_Mur3 LINE L1 -1004 4876 3386 5 782 261 295 113 63 chr3 25870157 25870316 -133729467 + RLTR21 LTR ERVK 1087 1253 -319 5 782 216 0 0 0 chr3 25870316 25870340 -133729443 + (TA)n Simple_repeat Simple_repeat 2 25 0 5 782 286 308 14 14 chr3 25870341 25870486 -133729297 + L1_Mur3 LINE L1 4732 4876 -1004 5 782 22 35 0 0 chr3 25870496 25870525 -133729258 + AT_rich Low_complexity Low_complexity 1 29 0 5 782 268 292 58 0 chr3 25870529 25870700 -133729083 - L1_Mur3 LINE L1 -2549 3331 3151 5 782 426 271 91 23 chr3 25870706 25870838 -133728945 - B1_Mur2 SINE Alu -8 141 1 5 782 1648 278 79 45 chr3 25870873 25871721 -133728062 + Lx8 LINE L1 4880 5756 -124 5 782 222 37 0 0 chr3 25871740 25871767 -133728016 + (CA)n Simple_repeat Simple_repeat 2 28 0 5 782 279 113 0 0 chr3 25871775 25871828 -133727955 + (GA)n Simple_repeat Simple_repeat 1 53 0 5 782 1743 330 73 60 chr3 25871831 25872483 -133727300 + Lx8 LINE L1 6203 6888 -585 5 782 1094 88 0 13 chr3 25872483 25872623 -133727160 + B1_Mus2 SINE Alu 1 140 -7 5 782 293 0 27 0 chr3 25872623 25872660 -133727123 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 5 782 1743 330 73 60 chr3 25872668 25873232 -133726551 + Lx8 LINE L1 6889 7435 -38 5 782 238 351 0 0 chr3 25873527 25873625 -133726158 + B1F1 SINE Alu 23 120 -29 5 782 270 0 0 0 chr3 25873659 25873689 -133726094 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 5 782 1064 88 0 33 chr3 25873811 25873963 -133725820 + B1_Mus2 SINE Alu 1 147 0 5 782 7526 163 20 85 chr3 25873977 25874937 -133724846 + Lx LINE L1 4365 5329 -546 5 782 894 96 5 0 chr3 25874937 25875072 -133724711 + B1_Mus1 SINE Alu 4 144 -6 5 782 1182 53 0 0 chr3 25875074 25875224 -133724559 + (GAAA)n Simple_repeat Simple_repeat 1 150 0 5 782 7526 152 9 32 chr3 25875224 25876530 -133723253 + Lx LINE L1 5332 6653 -1 5 782 209 383 107 16 chr3 25877830 25878138 -133721645 - L2a LINE L2 0 3426 3091 5 782 661 294 34 15 chr3 25878313 25878517 -133721266 - B3 SINE B2 -6 210 3 5 782 635 279 39 78 chr3 25878545 25878751 -133721032 - B3 SINE B2 -8 208 11 5 782 486 251 99 12 chr3 25879214 25879375 -133720408 - MTEa LTR MaLR -4 375 201 5 782 929 109 7 0 chr3 25879649 25879787 -133719996 + B1_Mus1 SINE Alu 2 140 -8 5 782 366 146 24 12 chr3 25879787 25879870 -133719913 + GA-rich Low_complexity Low_complexity 1 84 0 5 782 322 323 95 65 chr3 25880336 25880505 -133719278 + B3 SINE B2 9 182 -34 5 782 327 85 0 0 chr3 25880511 25880558 -133719225 + (CA)n Simple_repeat Simple_repeat 1 47 0 5 782 504 122 0 0 chr3 25880558 25880640 -133719143 + (GA)n Simple_repeat Simple_repeat 1 82 0 5 782 337 420 20 5 chr3 25880660 25880861 -133718922 + ID_B1 SINE B4 1 204 -20 5 782 266 0 0 29 chr3 25881120 25881155 -133718628 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 5 782 1158 44 0 0 chr3 25881155 25881292 -133718491 - B1_Mus2 SINE Alu -10 137 1 5 782 24 0 0 0 chr3 25881535 25881559 -133718224 + AT_rich Low_complexity Low_complexity 1 24 0 5 782 852 72 0 0 chr3 25881576 25881701 -133718082 + (TG)n Simple_repeat Simple_repeat 2 126 0 5 782 509 68 14 0 chr3 25883079 25883153 -133716630 + (CA)n Simple_repeat Simple_repeat 1 75 0 5 782 3450 112 91 30 chr3 25883608 25884310 -133715473 + Lx LINE L1 5825 6635 -1 5 782 1666 253 49 21 chr3 25885081 25885601 -133714182 + RLTR11A2 LTR ERVK 1 527 0 5 782 246 125 0 0 chr3 25886742 25886790 -133712993 + (CAAAAA)n Simple_repeat Simple_repeat 3 50 0 5 782 5709 3 0 0 chr3 25888219 25888850 -133710933 - L1Md_A LINE L1 -365 6217 5587 5 782 3254 3 0 0 chr3 25888862 25889251 -133710532 + L1Md_A LINE L1 6220 6582 0 5 782 266 254 0 0 chr3 25889990 25890049 -133709734 + RMER15 LTR ERVL 1 59 -516 5 782 1892 269 44 17 chr3 25890102 25890627 -133709156 + RMER15 LTR ERVL 37 575 0 5 782 223 286 0 16 chr3 25890630 25890694 -133709089 + GA-rich Low_complexity Low_complexity 4 66 0 5 782 188 210 24 24 chr3 25890764 25890847 -133708936 + GA-rich Low_complexity Low_complexity 4 86 0 5 782 387 0 0 0 chr3 25892175 25892218 -133707565 + (TA)n Simple_repeat Simple_repeat 2 44 0 5 782 977 103 13 0 chr3 25892476 25892631 -133707152 + L1_Mus3 LINE L1 6475 6631 -7 5 782 200 250 18 0 chr3 25894065 25894121 -133705662 + T-rich Low_complexity Low_complexity 2 58 0 5 782 1989 202 44 17 chr3 25896144 25896741 -133703042 + Lx7 LINE L1 5545 6167 -1529 5 782 239 335 83 11 chr3 25896813 25896994 -133702789 + L1M3 LINE L1 4769 4962 -1178 5 782 246 338 11 98 chr3 25897057 25897231 -133702552 + L1MB8 LINE L1 5908 6066 -112 5 782 339 276 122 20 chr3 25897238 25897386 -133702397 + RSINE1 SINE B4 3 165 0 5 782 250 226 9 9 chr3 25897387 25897494 -133702289 + (CA)n Simple_repeat Simple_repeat 2 108 0 5 782 225 0 0 0 chr3 25898338 25898363 -133701420 + (CA)n Simple_repeat Simple_repeat 1 25 0 5 782 192 200 12 24 chr3 25898386 25898468 -133701315 + GA-rich Low_complexity Low_complexity 1 81 0 5 782 771 338 45 7 chr3 25899570 25899856 -133699927 + MTE2b LTR MaLR 1 297 -82 5 782 202 89 67 0 chr3 25901396 25901441 -133698342 + A-rich Low_complexity Low_complexity 2 49 0 5 782 526 300 75 10 chr3 25903892 25904097 -133695686 - B3A SINE B2 0 216 2 5 782 293 118 20 0 chr3 25904367 25904418 -133695365 + (TA)n Simple_repeat Simple_repeat 1 52 0 5 782 493 27 55 0 chr3 25904818 25904891 -133694892 + (TAGA)n Simple_repeat Simple_repeat 1 77 0 5 782 618 148 8 15 chr3 25904891 25905012 -133694771 + Lx9 LINE L1 7515 7636 -8 5 782 185 35 0 65 chr3 25906658 25906689 -133693094 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 5 782 21 0 0 0 chr3 25907307 25907328 -133692455 + AT_rich Low_complexity Low_complexity 1 21 0 5 782 24 53 0 0 chr3 25908547 25908585 -133691198 + AT_rich Low_complexity Low_complexity 1 38 0 5 782 295 253 177 0 chr3 25908665 25908744 -133691039 + PB1 SINE Alu 21 113 -14 5 782 603 74 0 0 chr3 25908757 25908838 -133690945 + (TTGGGG)n Simple_repeat Simple_repeat 5 85 0 5 782 21 57 0 0 chr3 25909674 25909709 -133690074 + AT_rich Low_complexity Low_complexity 1 35 0 5 782 486 0 0 0 chr3 25909803 25909857 -133689926 + (TA)n Simple_repeat Simple_repeat 2 55 0 5 782 21 0 0 0 chr3 25911117 25911138 -133688645 + AT_rich Low_complexity Low_complexity 1 21 0 5 782 217 109 43 0 chr3 25911178 25911224 -133688559 + (CAAA)n Simple_repeat Simple_repeat 4 51 0 5 782 526 294 42 31 chr3 25913052 25913263 -133686520 + Lx6 LINE L1 6121 6371 -679 5 782 1165 255 87 65 chr3 25913263 25913804 -133685979 + Lx6 LINE L1 6504 7433 -27 5 782 197 366 60 12 chr3 25913863 25913946 -133685837 - MIR SINE MIR -2 260 174 5 782 487 359 42 19 chr3 25914119 25914335 -133685448 + B4A SINE B4 5 225 -67 5 782 302 305 58 17 chr3 25914450 25914570 -133685213 - RSINE1 SINE B4 -26 139 15 5 782 276 233 67 0 chr3 25915258 25915348 -133684435 + Zaphod DNA Tip100 3867 3962 -69 5 782 335 324 73 45 chr3 25916024 25916202 -133683581 - B3A SINE B2 -8 190 8 5 782 266 357 54 0 chr3 25916757 25916869 -133682914 + RSINE1 SINE B4 44 161 -4 6 782 231 36 0 0 chr3 25916873 25916901 -133682882 + (TTAA)n Simple_repeat Simple_repeat 1 28 0 6 782 276 308 48 0 chr3 25917615 25917719 -133682064 - PB1D10 SINE Alu -8 109 1 6 782 796 286 9 0 chr3 25918123 25918336 -133681447 - B3 SINE B2 0 216 2 6 782 25 0 0 0 chr3 25918475 25918500 -133681283 + AT_rich Low_complexity Low_complexity 1 25 0 6 782 285 393 11 22 chr3 25919012 25919194 -133680589 + B4A SINE B4 2 181 -111 6 782 1664 195 35 83 chr3 25919526 25919900 -133679883 + ORR1B1 LTR MaLR 39 394 0 6 782 198 103 0 0 chr3 25921892 25921921 -133677862 + (T)n Simple_repeat Simple_repeat 1 29 0 6 782 323 385 64 92 chr3 25922736 25923160 -133676623 - MLT1D LTR MaLR -24 481 70 6 782 21 36 0 0 chr3 25923422 25923450 -133676333 + AT_rich Low_complexity Low_complexity 1 28 0 6 782 231 356 64 36 chr3 25924547 25924687 -133675096 + B4A SINE B4 15 158 -134 6 782 770 257 58 31 chr3 25924855 25925080 -133674703 + MTE2b LTR MaLR 138 368 -11 6 782 594 211 0 0 chr3 25925700 25925880 -133673903 + (TG)n Simple_repeat Simple_repeat 1 180 0 6 782 204 226 28 19 chr3 25925858 25925966 -133673817 + (TATG)n Simple_repeat Simple_repeat 4 112 0 6 782 417 228 0 27 chr3 25925963 25926148 -133673635 + (TG)n Simple_repeat Simple_repeat 1 180 0 6 782 354 284 0 12 chr3 25926148 25926230 -133673553 - B3A SINE B2 -16 182 102 6 782 1848 298 131 29 chr3 25926301 25927189 -133672594 + Lx9 LINE L1 6522 7499 -145 6 782 29 78 0 0 chr3 25927214 25927278 -133672505 + AT_rich Low_complexity Low_complexity 1 64 0 6 782 297 221 31 23 chr3 25927348 25927478 -133672305 + (TA)n Simple_repeat Simple_repeat 2 132 0 6 782 27 29 0 0 chr3 25927557 25927591 -133672192 + AT_rich Low_complexity Low_complexity 1 34 0 6 782 382 254 276 6 chr3 25927597 25927767 -133672016 + B3 SINE B2 1 216 0 6 782 25 0 0 0 chr3 25928147 25928172 -133671611 + AT_rich Low_complexity Low_complexity 1 25 0 6 782 827 139 57 57 chr3 25928181 25928357 -133671426 - Lx3B LINE L1 -2 6971 6796 6 782 36 53 0 0 chr3 25928439 25928496 -133671287 + AT_rich Low_complexity Low_complexity 1 57 0 6 782 30 45 0 0 chr3 25928533 25928577 -133671206 + AT_rich Low_complexity Low_complexity 1 44 0 6 782 555 277 0 51 chr3 25928927 25929083 -133670700 + B1_Mur1 SINE Alu 2 149 0 6 782 5036 134 42 61 chr3 25930410 25931387 -133668396 - RMER17B LTR ERVK 0 958 1 6 782 2295 299 94 40 chr3 25931807 25932920 -133666863 - Lx8 LINE L1 -6 7467 6294 6 782 265 357 31 8 chr3 25934499 25934626 -133665157 + MTE2b LTR MaLR 12 141 -280 6 782 2202 225 79 17 chr3 25934629 25935159 -133664624 + RLTR12A LTR ERVK 1 563 -5 6 782 467 320 28 28 chr3 25935265 25935445 -133664338 + MTE2b LTR MaLR 195 374 -5 6 782 484 241 37 0 chr3 25935840 25935948 -133663835 + PB1D9 SINE Alu 5 116 -4 6 782 210 37 0 0 chr3 25936085 25936112 -133663671 + (TTTTG)n Simple_repeat Simple_repeat 4 30 0 6 782 21 57 0 0 chr3 25937627 25937662 -133662121 + AT_rich Low_complexity Low_complexity 1 35 0 6 782 710 286 66 34 chr3 25937845 25938259 -133661524 + Lx8 LINE L1 5455 5881 -422 6 782 255 339 15 0 chr3 25939680 25939745 -133660038 + ID4_ SINE ID 12 77 -6 6 782 22 0 0 0 chr3 25940129 25940151 -133659632 + AT_rich Low_complexity Low_complexity 1 22 0 6 782 495 275 68 27 chr3 25941614 25941760 -133658023 - MTC LTR MaLR -13 394 243 6 782 577 313 67 47 chr3 25941770 25942068 -133657715 - MTC LTR MaLR -113 308 5 6 782 1065 251 48 108 chr3 25942178 25942575 -133657208 + MTE2a LTR MaLR 5 377 -2 6 782 21 36 0 0 chr3 25942728 25942756 -133657027 + AT_rich Low_complexity Low_complexity 1 28 0 6 782 307 162 25 0 chr3 25942809 25942889 -133656894 + CT-rich Low_complexity Low_complexity 2 83 0 6 782 314 176 103 0 chr3 25943262 25943330 -133656453 + HAL1-3A_ME LINE L1 1980 2054 -804 6 782 922 187 121 5 chr3 25944361 25944560 -133655223 + URR1A DNA MER1_type 1 222 -4 6 782 1083 100 0 0 chr3 25944591 25944933 -133654850 + (TG)n Simple_repeat Simple_repeat 1 342 0 6 782 474 18 0 0 chr3 25945375 25945430 -133654353 + (TC)n Simple_repeat Simple_repeat 2 56 0 6 782 339 25 0 0 chr3 25945430 25945469 -133654314 + (TG)n Simple_repeat Simple_repeat 1 40 0 6 782 464 319 74 23 chr3 25945529 25945721 -133654062 - B3A SINE B2 -9 186 2 6 782 578 275 149 10 chr3 25945730 25945925 -133653858 - B4 SINE B4 -67 225 4 6 782 204 67 0 0 chr3 25946988 25947018 -133652765 + (A)n Simple_repeat Simple_repeat 1 30 0 6 782 252 0 0 0 chr3 25948489 25948517 -133651266 + (CAAAG)n Simple_repeat Simple_repeat 2 29 0 6 782 458 283 0 9 chr3 25949015 25949122 -133650661 + B1F SINE Alu 1 106 -43 6 782 216 328 46 23 chr3 25949211 25949342 -133650441 - MIR SINE MIR -69 193 60 6 782 21 0 0 0 chr3 25950836 25950857 -133648926 + AT_rich Low_complexity Low_complexity 1 21 0 6 782 248 257 34 38 chr3 25951180 25951280 -133648503 - MTD LTR MaLR -15 404 276 6 782 547 206 61 18 chr3 25951345 25951508 -133648275 - L1MD2 LINE L1 -399 5960 5791 6 97 285 342 65 65 chr3 25952178 25952456 -133647327 - B4 SINE B4 -14 278 1 6 783 209 119 24 0 chr3 25952523 25952565 -133647218 + (CA)n Simple_repeat Simple_repeat 2 44 0 6 783 3300 33 2 34 chr3 25953090 25953499 -133646284 - MTA_Mm LTR MaLR 0 396 1 6 783 197 329 58 77 chr3 25954118 25954273 -133645510 + L4 LINE RTE 464 615 -1414 6 783 4194 136 10 96 chr3 25954659 25955544 -133644239 + RMER17D2 LTR ERVK 1 809 0 6 783 672 58 0 0 chr3 25955978 25956064 -133643719 - BC1_Mm scRNA scRNA -66 86 1 6 783 877 259 90 0 chr3 25956398 25956664 -133643119 + B4A SINE B4 1 290 -2 6 783 201 121 0 0 chr3 25956692 25956725 -133643058 + (CA)n Simple_repeat Simple_repeat 1 33 0 6 783 641 340 50 97 chr3 25958380 25958576 -133641207 + MLT1C LTR MaLR 2 183 -284 6 783 756 22 0 0 chr3 25958576 25958666 -133641117 + (TCTCC)n Simple_repeat Simple_repeat 2 91 0 6 783 641 340 50 97 chr3 25958666 25958695 -133641088 + MLT1C LTR MaLR 184 203 -264 6 783 225 0 0 0 chr3 25958695 25958720 -133641063 + (CA)n Simple_repeat Simple_repeat 2 26 0 6 783 641 340 50 97 chr3 25958720 25958978 -133640805 + MLT1C LTR MaLR 204 463 -4 6 783 1364 31 0 0 chr3 25959007 25959170 -133640613 + B2_Mm1t SINE B2 3 165 -28 6 783 22 0 0 0 chr3 25959170 25959192 -133640591 + AT_rich Low_complexity Low_complexity 1 22 0 6 783 283 0 23 45 chr3 25959192 25959236 -133640547 + (TAAA)n Simple_repeat Simple_repeat 3 45 0 6 783 1946 0 0 0 chr3 25959236 25959455 -133640328 + L1Md_A LINE L1 6364 6582 0 6 783 252 213 0 16 chr3 25959707 25959769 -133640014 + Lx9 LINE L1 7209 7269 -375 6 783 1476 82 9 14 chr3 25960118 25960339 -133639444 + L1_Mus3 LINE L1 6419 6638 0 6 783 288 77 0 0 chr3 25960397 25960436 -133639347 + (TATG)n Simple_repeat Simple_repeat 2 40 0 6 783 22 0 0 0 chr3 25961168 25961190 -133638593 + AT_rich Low_complexity Low_complexity 1 22 0 6 783 675 272 18 6 chr3 25962537 25962700 -133637083 + RSINE1 SINE B4 1 165 0 6 783 255 173 0 0 chr3 25962703 25962755 -133637028 + (TGAA)n Simple_repeat Simple_repeat 3 54 0 6 783 363 341 96 0 chr3 25963030 25963165 -133636618 - ID_B1 SINE B4 0 224 77 6 783 1637 178 79 3 chr3 25963184 25963499 -133636284 - ORR1B1 LTR MaLR -55 339 1 6 783 1671 83 16 44 chr3 25963500 25963751 -133636032 - L1Md_F2 LINE L1 -7 6575 6332 6 783 226 376 45 9 chr3 25965040 25965150 -133634633 - MIRb SINE MIR -129 139 26 6 783 630 262 91 58 chr3 25965275 25965641 -133634142 + MTD LTR MaLR 11 379 0 6 783 306 360 75 38 chr3 25965722 25965881 -133633902 - MER20 DNA MER1_type -13 206 42 6 783 498 288 166 51 chr3 25967049 25967518 -133632265 + MT2A LTR ERVL 1 523 -10 6 783 1335 61 33 6 chr3 25967705 25967886 -133631897 + B2_Mm2 SINE B2 3 188 -7 6 783 441 0 0 0 chr3 25969746 25969795 -133629988 + (TA)n Simple_repeat Simple_repeat 2 50 0 6 783 22 0 0 0 chr3 25970999 25971021 -133628762 + AT_rich Low_complexity Low_complexity 1 22 0 6 783 486 333 131 4 chr3 25972000 25972229 -133627554 - Lx8 LINE L1 -667 6806 6549 6 783 894 309 124 2 chr3 25972231 25972627 -133627156 + Lx8 LINE L1 6823 7266 -207 6 783 262 70 53 53 chr3 25972960 25973036 -133626747 + A-rich Low_complexity Low_complexity 2 77 0 6 783 26 50 0 0 chr3 25973978 25974018 -133625765 + AT_rich Low_complexity Low_complexity 1 40 0 6 783 523 269 137 47 chr3 25974185 25974419 -133625364 + B4A SINE B4 24 278 -14 6 783 345 100 0 0 chr3 25974466 25974516 -133625267 + (TAAA)n Simple_repeat Simple_repeat 1 50 0 6 783 531 0 0 0 chr3 25974592 25974651 -133625132 + (TCTA)n Simple_repeat Simple_repeat 2 60 0 6 783 576 130 157 0 chr3 25974969 25975084 -133624699 + BC1_Mm scRNA scRNA 2 134 -18 6 783 369 380 8 0 chr3 25975726 25975855 -133623928 - MLT1H1 LTR MaLR -414 141 12 6 783 180 0 0 0 chr3 25976183 25976203 -133623580 + (TA)n Simple_repeat Simple_repeat 2 21 0 6 783 615 194 65 0 chr3 25976701 25976825 -133622958 + B1_Mur4 SINE Alu 1 132 -18 6 783 551 62 12 0 chr3 25976825 25976905 -133622878 + (TAGA)n Simple_repeat Simple_repeat 2 82 0 6 783 548 340 17 34 chr3 25976912 25977204 -133622579 + B4A SINE B4 4 290 -2 6 783 203 61 0 29 chr3 25978505 25978539 -133621244 + (TAAAAA)n Simple_repeat Simple_repeat 5 37 0 6 783 22 70 0 0 chr3 25978686 25978729 -133621054 + AT_rich Low_complexity Low_complexity 1 43 0 6 783 1352 302 51 40 chr3 25978823 25979709 -133620074 + L1MA5A LINE L1 4539 5434 -446 6 783 443 227 10 0 chr3 25979725 25979822 -133619961 - Lx9 LINE L1 -290 7354 7257 7 783 431 147 13 0 chr3 25979830 25979905 -133619878 + Lx9 LINE L1 7389 7464 -180 7 783 609 194 0 0 chr3 25979916 25980096 -133619687 + GA-rich Low_complexity Low_complexity 1 180 0 7 783 815 267 58 41 chr3 25980208 25980571 -133619212 + L1MA5A LINE L1 5477 5845 -452 6 783 189 0 0 0 chr3 25980925 25980946 -133618837 + (TG)n Simple_repeat Simple_repeat 2 22 0 7 783 239 313 8 38 chr3 25981325 25981458 -133618325 + GA-rich Low_complexity Low_complexity 6 134 0 7 783 312 158 68 68 chr3 25981635 25981723 -133618060 - Lx7 LINE L1 -325 7371 7284 7 783 540 325 104 25 chr3 25981944 25982260 -133617523 - Lx8 LINE L1 -2 7471 7131 7 783 224 298 0 0 chr3 25982985 25983042 -133616741 - MIRc SINE MIR -105 163 107 7 783 702 89 10 0 chr3 25984131 25984232 -133615551 - Lx LINE L1 -575 6079 5978 7 783 3927 99 34 2 chr3 25984212 25984769 -133615014 + Lx LINE L1 6047 6621 -33 7 783 274 61 0 39 chr3 25984769 25984820 -133614963 + (TAAA)n Simple_repeat Simple_repeat 1 49 0 7 783 180 111 0 0 chr3 25984829 25984856 -133614927 + (CA)n Simple_repeat Simple_repeat 2 28 0 7 783 1775 62 0 4 chr3 25985338 25985563 -133614220 - L1_Mus1 LINE L1 -1 6566 6343 7 783 1728 70 4 0 chr3 25985563 25985793 -133613990 + L1_Mus1 LINE L1 6103 6333 -234 7 783 14617 50 1 0 chr3 25988130 25990630 -133609153 - L1Md_F2 LINE L1 -6 6576 4076 7 783 894 247 25 5 chr3 25991438 25991637 -133608146 + Lx5 LINE L1 6843 7045 -5 7 783 515 229 7 0 chr3 25991641 25991785 -133607998 + GA-rich Low_complexity Low_complexity 2 146 0 7 783 180 111 0 0 chr3 25992762 25992789 -133606994 + (ATTG)n Simple_repeat Simple_repeat 4 30 0 7 783 393 206 0 0 chr3 25993791 25993898 -133605885 + CT-rich Low_complexity Low_complexity 3 109 0 7 783 647 206 6 0 chr3 25993921 25994096 -133605687 + CT-rich Low_complexity Low_complexity 2 177 0 7 783 445 259 153 0 chr3 25994599 25994730 -133605053 + B3A SINE B2 4 154 -44 7 783 554 289 63 103 chr3 25995461 25995696 -133604087 + B4 SINE B4 4 222 -70 7 783 459 63 0 0 chr3 25995696 25995759 -133604024 + (TAGA)n Simple_repeat Simple_repeat 4 66 0 7 783 554 289 63 103 chr3 25995759 25995824 -133603959 + B4 SINE B4 223 292 0 7 783 8819 25 0 0 chr3 25995920 25997632 -133602151 - L1Md_T LINE L1 0 6582 4871 7 783 1876 43 0 0 chr3 25997628 25997859 -133601924 + L1Md_T LINE L1 4634 4864 -1019 7 783 26 74 0 0 chr3 25998454 25998508 -133601275 + AT_rich Low_complexity Low_complexity 1 54 0 7 783 203 0 37 0 chr3 25999934 25999961 -133599822 + (CAA)n Simple_repeat Simple_repeat 3 30 0 7 783 520 266 25 10 chr3 26000073 26000274 -133599509 + L1MA9 LINE L1 5573 5776 -536 1 783 374 228 8 0 chr3 26000326 26000453 -133599330 + GA-rich Low_complexity Low_complexity 1 128 0 2 783 501 365 24 7 chr3 26000498 26000912 -133598871 + L1MA9 LINE L1 5829 6249 -63 1 783 371 261 107 25 chr3 26000919 26001041 -133598742 + B1F SINE Alu 1 132 -17 3 783 755 97 0 9 chr3 26001144 26001259 -133598524 + (GAAAA)n Simple_repeat Simple_repeat 2 115 0 4 783 261 0 0 0 chr3 26001285 26001314 -133598469 + (A)n Simple_repeat Simple_repeat 1 29 0 5 783 320 319 103 69 chr3 26001580 26001725 -133598058 + B4A SINE B4 2 151 -141 6 783 324 0 0 0 chr3 26002037 26002073 -133597710 + (TA)n Simple_repeat Simple_repeat 2 37 0 7 783 432 0 0 0 chr3 26002505 26002553 -133597230 + (TAAA)n Simple_repeat Simple_repeat 2 49 0 8 783 324 0 0 0 chr3 26002838 26002874 -133596909 + (TG)n Simple_repeat Simple_repeat 1 36 0 9 783 369 0 0 0 chr3 26002874 26002914 -133596869 + (GA)n Simple_repeat Simple_repeat 1 41 0 1 783 306 0 0 0 chr3 26004109 26004143 -133595640 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 1 783 299 315 25 85 chr3 26004188 26004362 -133595421 - MIR3 SINE MIR -3 205 46 1 783 36258 29 0 0 chr3 26005681 26012335 -133587448 - L1Md_T LINE L1 0 6585 1 1 783 246 357 151 5 chr3 26013988 26014174 -133585609 + MIR SINE MIR 12 224 -38 1 783 370 348 80 25 chr3 26014554 26014716 -133585067 - MER45A DNA Tip100 -4 174 4 1 783 441 336 7 0 chr3 26015262 26015399 -133584384 + RSINE1 SINE B4 28 165 0 1 783 192 273 0 0 chr3 26015401 26015489 -133584294 + (CA)n Simple_repeat Simple_repeat 1 88 0 1 783 217 224 0 0 chr3 26015510 26015559 -133584224 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 783 297 75 0 0 chr3 26015712 26015752 -133584031 + (TA)n Simple_repeat Simple_repeat 2 41 0 1 783 492 18 0 0 chr3 26016374 26016431 -133583352 + (TG)n Simple_repeat Simple_repeat 1 57 0 1 783 190 310 0 17 chr3 26016735 26016794 -133582989 - L2b LINE L2 -325 3050 2993 2 783 2348 135 41 38 chr3 26016906 26017323 -133582460 - Lx4A LINE L1 -16 7042 6625 2 783 442 288 83 0 chr3 26017439 26017658 -133582125 + L1MA4A LINE L1 5626 5933 -370 2 783 21 0 0 0 chr3 26017915 26017936 -133581847 + AT_rich Low_complexity Low_complexity 1 21 0 2 783 207 173 39 0 chr3 26018201 26018253 -133581530 + T-rich Low_complexity Low_complexity 2 55 0 2 783 369 246 643 11 chr3 26018354 26018527 -133581256 + B4 SINE B4 10 292 0 2 783 720 111 0 0 chr3 26018546 26018663 -133581120 + (CA)n Simple_repeat Simple_repeat 2 118 0 2 783 3467 280 95 24 chr3 26019527 26021025 -133578758 + Lx7 LINE L1 5630 7233 -463 2 783 285 376 98 6 chr3 26022761 26022935 -133576848 + MLT1C LTR MaLR 3 192 -275 2 783 697 250 80 35 chr3 26022935 26023134 -133576649 + B3 SINE B2 9 216 0 2 783 242 309 93 80 chr3 26023127 26023289 -133576494 + MLT1C LTR MaLR 163 326 -64 2 783 260 375 110 52 chr3 26023386 26023676 -133576107 + MLT1C LTR MaLR 88 394 -73 3 783 304 339 50 0 chr3 26023798 26024037 -133575746 + L1MA6 LINE L1 5934 6184 -116 3 783 748 327 58 36 chr3 26024181 26024457 -133575326 + B4 SINE B4 11 292 0 3 783 26 30 0 0 chr3 26024503 26024536 -133575247 + AT_rich Low_complexity Low_complexity 1 33 0 3 783 1028 8 0 8 chr3 26024766 26024888 -133574895 + (GGAAA)n Simple_repeat Simple_repeat 4 124 0 3 783 1118 71 0 0 chr3 26024891 26025032 -133574751 + B1_Mus2 SINE Alu 1 141 -6 3 783 322 147 0 60 chr3 26025035 26025151 -133574632 + A-rich Low_complexity Low_complexity 1 109 0 3 783 22 0 0 0 chr3 26027277 26027299 -133572484 + AT_rich Low_complexity Low_complexity 1 22 0 3 783 243 303 22 11 chr3 26027324 26027414 -133572369 + L2a LINE L2 3335 3425 -1 3 783 444 330 97 11 chr3 26028473 26028648 -133571135 - B4A SINE B4 -99 193 4 3 783 180 170 62 21 chr3 26028710 26028758 -133571025 + MIR SINE MIR 163 212 -50 4 783 181 364 0 0 chr3 26029153 26029208 -133570575 + L2a LINE L2 3301 3355 -71 4 783 435 302 13 67 chr3 26029577 26029726 -133570057 - ID_B1 SINE B4 -6 218 78 4 783 225 0 0 0 chr3 26030566 26030591 -133569192 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 4 783 801 320 83 32 chr3 26035317 26035595 -133564188 + B4A SINE B4 1 292 0 4 783 1643 267 111 64 chr3 26035858 26036170 -133563613 + RLTR40 LTR ERVK 1 350 -467 4 783 1123 82 0 7 chr3 26036170 26036317 -133563466 - B1_Mus1 SINE Alu 0 148 3 4 783 1643 267 111 64 chr3 26036317 26036781 -133563002 + RLTR40 LTR ERVK 351 813 -4 4 783 1041 265 127 15 chr3 26036837 26037167 -133562616 + ORR1D2 LTR MaLR 1 367 -3 4 783 24 0 0 0 chr3 26037709 26037733 -133562050 + AT_rich Low_complexity Low_complexity 1 24 0 4 783 271 222 0 0 chr3 26038138 26038192 -133561591 - MIRm SINE MIR 0 276 223 4 783 433 269 101 0 chr3 26038305 26038424 -133561359 + RSINE1 SINE B4 4 134 -31 5 783 28 0 0 0 chr3 26040059 26040087 -133559696 + AT_rich Low_complexity Low_complexity 1 28 0 5 783 187 104 42 0 chr3 26040505 26040553 -133559230 + (CAAAAA)n Simple_repeat Simple_repeat 6 55 0 5 783 396 336 8 0 chr3 26041174 26041296 -133558487 + ID_B1 SINE B4 86 208 -16 5 783 360 0 0 0 chr3 26042105 26042145 -133557638 + (TC)n Simple_repeat Simple_repeat 1 40 0 5 783 432 0 0 0 chr3 26042145 26042192 -133557591 + (CA)n Simple_repeat Simple_repeat 1 48 0 5 783 1875 169 110 48 chr3 26042309 26042625 -133557158 + RMER4A LTR ERVK 4 346 -120 5 783 507 60 0 0 chr3 26042625 26042692 -133557091 + (TCCC)n Simple_repeat Simple_repeat 3 69 0 5 783 1875 169 110 48 chr3 26042692 26042811 -133556972 + RMER4A LTR ERVK 347 465 -1 5 783 420 162 73 0 chr3 26043108 26043244 -133556539 + Lx9 LINE L1 7491 7636 -8 5 783 180 94 62 0 chr3 26043342 26043374 -133556409 - L3 LINE CR1 -3105 1384 1351 5 783 283 345 187 22 chr3 26044471 26044744 -133555039 - LFSINE_Vert SINE SINE -120 339 22 6 783 217 0 0 57 chr3 26045096 26045131 -133554652 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 6 783 25 51 0 0 chr3 26045843 26045882 -133553901 + AT_rich Low_complexity Low_complexity 1 39 0 6 783 1030 130 0 11 chr3 26046545 26046724 -133553059 + (GGAA)n Simple_repeat Simple_repeat 3 179 0 6 783 189 0 0 0 chr3 26046724 26046745 -133553038 + (GGGA)n Simple_repeat Simple_repeat 1 21 0 6 783 230 51 51 0 chr3 26046746 26046785 -133552998 + (GAAA)n Simple_repeat Simple_repeat 2 42 0 6 783 1345 172 146 67 chr3 26046787 26047192 -133552591 - RMER10A LTR ERVL -5 437 1 6 783 217 133 48 32 chr3 26047494 26047556 -133552227 + (TAAA)n Simple_repeat Simple_repeat 2 64 0 6 783 693 151 13 7 chr3 26047978 26048131 -133551652 + GA-rich Low_complexity Low_complexity 3 156 0 6 783 22 0 0 0 chr3 26052381 26052403 -133547380 + AT_rich Low_complexity Low_complexity 1 22 0 6 783 219 226 38 0 chr3 26052733 26052786 -133546997 + CT-rich Low_complexity Low_complexity 2 56 0 7 783 201 147 0 0 chr3 26052820 26052854 -133546929 + (A)n Simple_repeat Simple_repeat 1 34 0 7 783 306 0 0 0 chr3 26053273 26053307 -133546476 + (CA)n Simple_repeat Simple_repeat 1 34 0 7 783 505 329 6 6 chr3 26053471 26053630 -133546153 - RSINE1 SINE B4 -4 161 3 7 783 412 369 42 46 chr3 26053646 26053862 -133545921 - B3 SINE B2 0 216 2 7 783 288 238 143 0 chr3 26054097 26054181 -133545602 - MER5A1 DNA MER1_type -21 145 50 7 783 300 284 14 0 chr3 26054324 26054398 -133545385 + MIR SINE MIR 37 111 -97 7 783 329 302 86 64 chr3 26054458 26054860 -133544923 + L1M4 LINE L1 4549 4970 -1176 7 783 671 270 33 38 chr3 26055454 26055666 -133544117 + B3 SINE B2 5 215 -1 7 783 23 0 0 0 chr3 26055961 26055984 -133543799 + AT_rich Low_complexity Low_complexity 1 23 0 7 783 6087 255 70 31 chr3 26056118 26056769 -133543014 - Lx6 LINE L1 -8 7452 6748 8 783 191 32 0 61 chr3 26056769 26056802 -133542981 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 8 783 6087 223 44 18 chr3 26056802 26058836 -133540947 - Lx6 LINE L1 -713 6747 4673 8 783 498 33 0 0 chr3 26061027 26061087 -133538696 + (TG)n Simple_repeat Simple_repeat 2 61 0 8 783 195 162 0 0 chr3 26061090 26061127 -133538656 + (TTG)n Simple_repeat Simple_repeat 2 38 0 8 783 44 0 0 0 chr3 26061371 26061415 -133538368 + AT_rich Low_complexity Low_complexity 1 44 0 8 783 430 305 44 44 chr3 26061644 26061802 -133537981 - B4 SINE B4 -16 276 119 8 783 192 217 0 0 chr3 26061810 26061856 -133537927 + CT-rich Low_complexity Low_complexity 2 47 0 8 783 25 0 0 0 chr3 26062043 26062068 -133537715 + AT_rich Low_complexity Low_complexity 1 25 0 8 783 401 328 69 32 chr3 26063427 26063853 -133535930 + MLT1D LTR MaLR 20 502 -3 8 783 608 282 53 87 chr3 26063891 26064097 -133535686 + B3 SINE B2 2 200 -16 8 783 3359 142 132 5 chr3 26064102 26064716 -133535067 + RLTR17 LTR ERVK 1 692 0 9 783 296 257 90 34 chr3 26064742 26064807 -133534976 - Charlie5 DNA MER1_type 0 2624 2555 9 783 231 36 0 0 chr3 26064807 26064835 -133534948 + (TG)n Simple_repeat Simple_repeat 1 28 0 9 783 296 257 90 34 chr3 26064835 26064946 -133534837 - Charlie5 DNA MER1_type -70 2554 2439 9 783 202 338 137 72 chr3 26065125 26065649 -133534134 + L3 LINE CR1 2508 3065 -1424 9 783 255 337 11 11 chr3 26067873 26067966 -133531817 + MER5B DNA MER1_type 81 173 -5 9 783 282 286 100 0 chr3 26068427 26068497 -133531286 + ID4_ SINE ID 4 80 -3 9 783 356 190 0 12 chr3 26068797 26068882 -133530901 + C-rich Low_complexity Low_complexity 6 89 0 9 783 255 317 16 0 chr3 26070836 26070959 -133528824 + Lx9 LINE L1 7387 7511 -133 9 783 349 205 125 0 chr3 26070989 26071101 -133528682 + L1MA7 LINE L1 6164 6289 -2 9 783 21 0 0 0 chr3 26071310 26071331 -133528452 + AT_rich Low_complexity Low_complexity 1 21 0 9 783 198 0 0 0 chr3 26072889 26072911 -133526872 + (T)n Simple_repeat Simple_repeat 1 22 0 1 783 447 263 41 33 chr3 26073627 26073749 -133526034 - B1F2 SINE Alu -10 139 17 1 783 32 43 0 0 chr3 26074286 26074332 -133525451 + AT_rich Low_complexity Low_complexity 1 46 0 1 783 201 318 87 70 chr3 26074605 26074720 -133525063 - L2 LINE L2 -467 2952 2836 1 783 2685 189 109 43 chr3 26074767 26075813 -133523970 + Lx7 LINE L1 5216 6355 -1341 1 783 459 314 113 8 chr3 26077646 26077884 -133521899 + Lx7 LINE L1 7014 7276 -420 1 783 213 0 81 0 chr3 26077939 26077976 -133521807 + (CAAAA)n Simple_repeat Simple_repeat 2 41 0 1 783 215 159 23 0 chr3 26078505 26078549 -133521234 + T-rich Low_complexity Low_complexity 1 45 0 1 783 249 83 0 0 chr3 26078973 26079009 -133520774 + (TGGA)n Simple_repeat Simple_repeat 3 38 0 1 783 351 0 0 0 chr3 26079023 26079062 -133520721 + (CAGA)n Simple_repeat Simple_repeat 2 40 0 1 783 318 200 56 43 chr3 26079208 26079370 -133520413 + (TAGA)n Simple_repeat Simple_repeat 3 166 0 1 783 247 308 95 8 chr3 26080218 26080480 -133519303 + L1ME3 LINE L1 2128 2412 -3734 1 783 1219 306 37 33 chr3 26080686 26081227 -133518556 + Lx9 LINE L1 6897 7439 -205 1 783 372 77 0 0 chr3 26081246 26081298 -133518485 + (TC)n Simple_repeat Simple_repeat 1 52 0 1 783 441 0 0 0 chr3 26081300 26081349 -133518434 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 783 30 0 0 0 chr3 26081493 26081523 -133518260 + AT_rich Low_complexity Low_complexity 1 30 0 1 783 456 351 63 7 chr3 26081546 26081833 -133517950 + L1ME3 LINE L1 2736 3038 -3108 1 783 211 244 0 0 chr3 26082354 26082399 -133517384 + (TA)n Simple_repeat Simple_repeat 1 45 0 1 783 323 320 169 64 chr3 26082407 26082968 -133516815 + L1ME3 LINE L1 5336 5976 -186 1 97 261 119 0 0 chr3 26083320 26083362 -133516421 + (CA)n Simple_repeat Simple_repeat 1 42 0 1 784 280 313 119 0 chr3 26084494 26084628 -133515155 - MER5A1 DNA MER1_type -4 162 13 1 784 22 35 0 0 chr3 26085792 26085821 -133513962 + AT_rich Low_complexity Low_complexity 1 29 0 1 784 588 233 113 44 chr3 26086612 26086815 -133512968 - Lx8 LINE L1 -402 7071 6852 1 784 233 29 0 29 chr3 26086815 26086850 -133512933 + (TAAAA)n Simple_repeat Simple_repeat 5 38 0 1 784 588 233 113 44 chr3 26086850 26086875 -133512908 - Lx8 LINE L1 -622 6851 6827 1 784 360 64 0 0 chr3 26088700 26088747 -133511036 + (CA)n Simple_repeat Simple_repeat 1 47 0 1 784 2203 34 0 0 chr3 26088898 26089161 -133510622 + L1Md_A LINE L1 6320 6582 0 1 784 226 278 14 14 chr3 26089581 26089654 -133510129 - B4A SINE B4 -210 82 10 1 784 2344 156 8 12 chr3 26089862 26090264 -133509519 + Lx2 LINE L1 6584 6983 -14 1 784 204 40 0 0 chr3 26090428 26090453 -133509330 + (TAA)n Simple_repeat Simple_repeat 2 26 0 1 784 498 227 58 8 chr3 26091707 26091827 -133507956 - RSINE1 SINE B4 -31 134 9 1 784 419 35 18 0 chr3 26092943 26093000 -133506783 + (CA)n Simple_repeat Simple_repeat 1 58 0 1 784 1026 71 0 0 chr3 26093037 26093177 -133506606 + L1_Mus2 LINE L1 6426 6565 -1 1 784 215 160 0 39 chr3 26093422 26093474 -133506309 + CT-rich Low_complexity Low_complexity 2 51 0 1 784 588 29 0 0 chr3 26095018 26095088 -133504695 + (TG)n Simple_repeat Simple_repeat 1 70 0 1 784 38 0 0 0 chr3 26095312 26095350 -133504433 + AT_rich Low_complexity Low_complexity 1 38 0 1 784 487 262 57 0 chr3 26095633 26095774 -133504009 + B3 SINE B2 57 205 -11 1 784 231 350 79 65 chr3 26095745 26095959 -133503824 - RMER12 LTR ERVK -467 855 639 1 784 1080 103 0 7 chr3 26096827 26096974 -133502809 - B1_Mus2 SINE Alu 0 147 2 1 784 2951 66 5 12 chr3 26097119 26097518 -133502265 + MTA_Mm LTR MaLR 1 396 0 1 784 874 340 43 5 chr3 26097825 26098200 -133501583 + ERVL-B4-int LTR ERVL 2929 3317 -2397 1 784 3112 112 8 13 chr3 26099818 26100290 -133499493 - L1_Mus3 LINE L1 0 6638 6169 1 784 27 62 0 0 chr3 26102058 26102106 -133497677 + AT_rich Low_complexity Low_complexity 1 48 0 1 784 6224 53 0 8 chr3 26102616 26103408 -133496375 + L1Md_F2 LINE L1 5795 6580 -2 1 784 548 332 82 50 chr3 26103484 26103763 -133496020 + B4A SINE B4 2 289 -3 1 784 196 93 45 23 chr3 26105142 26105186 -133494597 + A-rich Low_complexity Low_complexity 3 47 0 1 784 21 36 0 0 chr3 26105355 26105383 -133494400 + AT_rich Low_complexity Low_complexity 1 28 0 1 784 342 61 0 0 chr3 26106416 26106465 -133493318 + (TA)n Simple_repeat Simple_repeat 1 49 0 1 784 10346 153 10 3 chr3 26106465 26108222 -133491561 - L1_Mur2 LINE L1 -625 5252 3484 1 784 206 321 13 13 chr3 26108605 26108684 -133491099 - L2 LINE L2 -792 2627 2549 1 784 657 223 11 39 chr3 26109807 26109989 -133489794 + L1_Rod LINE L1 4748 4924 -923 1 784 1181 211 0 63 chr3 26110000 26110268 -133489515 + Lx3B LINE L1 6717 6967 -6 1 784 423 0 0 0 chr3 26110278 26110325 -133489458 + (TAA)n Simple_repeat Simple_repeat 3 49 0 1 784 698 265 90 21 chr3 26110325 26110660 -133489123 + L1_Rod LINE L1 4930 5287 -560 1 784 1808 287 41 36 chr3 26110852 26111401 -133488382 + Lx9 LINE L1 6893 7434 -210 1 784 351 0 0 0 chr3 26111401 26111440 -133488343 + (TC)n Simple_repeat Simple_repeat 2 40 0 1 784 579 15 0 0 chr3 26111440 26111507 -133488276 + (TG)n Simple_repeat Simple_repeat 1 68 0 1 784 1808 287 41 36 chr3 26111507 26111704 -133488079 + Lx9 LINE L1 7435 7643 -1 1 784 1137 295 59 22 chr3 26112327 26112971 -133486812 + L1MC1 LINE L1 4663 5330 -816 1 784 971 219 115 4 chr3 26112974 26113253 -133486530 + Lx9 LINE L1 7332 7641 -3 1 784 878 321 81 82 chr3 26113330 26113813 -133485970 + L1MC1 LINE L1 5396 5858 -475 1 784 1961 53 4 0 chr3 26113813 26114060 -133485723 - L1_Mus1 LINE L1 0 6567 6320 1 784 878 321 81 82 chr3 26114060 26114445 -133485338 + L1MC1 LINE L1 5859 6263 -70 1 784 280 328 51 17 chr3 26114660 26114778 -133485005 - RSINE1 SINE B4 -42 123 2 1 784 276 190 24 12 chr3 26116010 26116095 -133483688 + (TA)n Simple_repeat Simple_repeat 2 87 0 1 784 419 353 78 70 chr3 26116111 26116470 -133483313 + MLT1A0 LTR MaLR 4 365 0 1 784 1143 75 0 0 chr3 26117635 26117781 -133482002 - B1_Mus1 SINE Alu 0 148 3 1 784 402 21 0 0 chr3 26117781 26117828 -133481955 + (TA)n Simple_repeat Simple_repeat 1 47 0 1 784 24 0 0 0 chr3 26118764 26118788 -133480995 + AT_rich Low_complexity Low_complexity 1 24 0 1 784 602 321 94 79 chr3 26121209 26121590 -133478193 + L1MA6 LINE L1 5357 5766 -534 1 784 1790 187 0 3 chr3 26121590 26121923 -133477860 + Lx LINE L1 6316 6647 -7 1 784 602 321 94 79 chr3 26121923 26122200 -133477583 + L1MA6 LINE L1 5767 6025 -275 1 784 26 0 0 0 chr3 26122321 26122347 -133477436 + AT_rich Low_complexity Low_complexity 1 26 0 1 784 1726 177 68 113 chr3 26123010 26123125 -133476658 - MTC LTR MaLR -5 416 336 1 784 4877 56 3 3 chr3 26123125 26123739 -133476044 - L1Md_F2 LINE L1 -12 6570 5957 1 784 1726 177 68 113 chr3 26123739 26124049 -133475734 - MTC LTR MaLR -86 335 10 1 784 3219 31 3 10 chr3 26124553 26124944 -133474839 + L1Md_F3 LINE L1 6196 6583 -1 1 784 468 0 0 0 chr3 26125314 26125366 -133474417 + (CA)n Simple_repeat Simple_repeat 1 52 0 1 784 218 216 59 0 chr3 26128000 26128051 -133471732 + L2b LINE L2 3318 3371 -4 1 784 369 0 0 0 chr3 26128211 26128252 -133471531 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 784 290 169 22 22 chr3 26128252 26128343 -133471440 + (TA)n Simple_repeat Simple_repeat 1 91 0 1 784 242 116 23 0 chr3 26128440 26128483 -133471300 + (TA)n Simple_repeat Simple_repeat 1 44 0 1 784 408 40 0 0 chr3 26128492 26128542 -133471241 + (TG)n Simple_repeat Simple_repeat 1 50 0 1 784 888 134 21 0 chr3 26128545 26128687 -133471096 - B1_Mur4 SINE Alu -5 145 1 1 784 25 0 0 0 chr3 26128759 26128784 -133470999 + AT_rich Low_complexity Low_complexity 1 25 0 1 784 26 30 0 0 chr3 26130706 26130739 -133469044 + AT_rich Low_complexity Low_complexity 1 33 0 1 784 21 0 0 0 chr3 26130892 26130913 -133468870 + AT_rich Low_complexity Low_complexity 1 21 0 1 784 2273 265 67 2 chr3 26130950 26131532 -133468251 - Lx6 LINE L1 -27 7433 6814 1 784 1437 73 5 5 chr3 26132362 26132554 -133467229 - B2_Mm2 SINE B2 -3 192 1 1 784 1644 138 59 14 chr3 26132920 26133207 -133466576 - Lx4A LINE L1 -3 7055 6756 1 784 982 109 7 0 chr3 26133449 26133596 -133466187 + URR1A DNA MER1_type 79 226 0 1 784 26 0 0 0 chr3 26133754 26133780 -133466003 + AT_rich Low_complexity Low_complexity 1 26 0 1 784 23 0 0 0 chr3 26133903 26133926 -133465857 + AT_rich Low_complexity Low_complexity 1 23 0 1 784 470 400 7 0 chr3 26135182 26135322 -133464461 - RSINE1 SINE B4 -22 143 3 1 784 1357 185 46 0 chr3 26135715 26135974 -133463809 + Lx9 LINE L1 7150 7420 -224 1 784 257 109 107 18 chr3 26135986 26136042 -133463741 + Lx9 LINE L1 7583 7643 -1 1 784 394 296 89 46 chr3 26136875 26137155 -133462628 + L1MC LINE L1 3056 3347 -2799 1 784 319 281 130 21 chr3 26137414 26137637 -133462146 + L1M4 LINE L1 3650 3885 -2261 1 784 359 318 89 48 chr3 26137908 26138179 -133461604 + L1M4 LINE L1 3971 4252 -1894 1 784 478 335 91 27 chr3 26138378 26139046 -133460737 + L1M4 LINE L1 4451 5161 -985 1 784 483 305 161 37 chr3 26139165 26139383 -133460400 + B4 SINE B4 2 246 -46 1 784 441 0 0 0 chr3 26139426 26139475 -133460308 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 784 242 236 62 23 chr3 26140055 26140185 -133459598 + (TAGA)n Simple_repeat Simple_repeat 4 138 0 1 784 386 338 56 28 chr3 26141187 26141403 -133458380 + MIRb SINE MIR 47 268 0 1 784 492 358 0 0 chr3 26141567 26141704 -133458079 - ID_B1 SINE B4 -10 214 78 1 784 242 349 39 31 chr3 26142468 26142598 -133457185 - MIRb SINE MIR -4 264 134 1 784 477 0 0 0 chr3 26143437 26143490 -133456293 + (CA)n Simple_repeat Simple_repeat 2 54 0 1 784 249 307 0 0 chr3 26144657 26144732 -133455051 + L1M5 LINE L1 2967 3041 -3105 1 784 423 0 0 0 chr3 26144773 26144820 -133454963 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 784 456 19 0 0 chr3 26144820 26144872 -133454911 + (GA)n Simple_repeat Simple_repeat 2 54 0 1 784 737 289 25 11 chr3 26144898 26145210 -133454573 + L1MA4 LINE L1 5602 5956 -233 1 784 380 208 83 0 chr3 26146016 26146136 -133453647 - Lx9 LINE L1 -1 7643 7514 1 784 231 88 0 0 chr3 26146537 26146571 -133453212 + (TTG)n Simple_repeat Simple_repeat 3 36 0 1 784 264 230 54 0 chr3 26146844 26146918 -133452865 - L1M2 LINE L1 -315 5874 5797 2 784 332 260 79 88 chr3 26147297 26147512 -133452271 - L1M2 LINE L1 -792 5351 5139 2 784 574 322 13 0 chr3 26147712 26147861 -133451922 + RSINE1 SINE B4 3 153 -12 2 784 674 278 33 9 chr3 26148099 26148310 -133451473 + ID_B1 SINE B4 1 216 -8 2 784 21 0 0 0 chr3 26148324 26148345 -133451438 + AT_rich Low_complexity Low_complexity 1 21 0 2 784 226 361 14 0 chr3 26148466 26148538 -133451245 + AluG_3 SINE Alu 152 224 -87 2 784 339 335 27 44 chr3 26150123 26150348 -133449435 + L1M5 LINE L1 5425 5645 -479 2 784 33 25 0 0 chr3 26150567 26150607 -133449176 + AT_rich Low_complexity Low_complexity 1 40 0 2 784 519 182 5 0 chr3 26151004 26151217 -133448566 + (TG)n Simple_repeat Simple_repeat 1 214 0 2 784 430 323 42 97 chr3 26151217 26151526 -133448257 - B4A SINE B4 0 292 1 2 784 258 198 23 23 chr3 26151659 26151747 -133448036 + Lx4B LINE L1 6967 7054 -4 2 784 258 106 0 0 chr3 26152902 26152949 -133446834 + (CAGA)n Simple_repeat Simple_repeat 4 50 0 2 784 336 102 0 0 chr3 26153282 26153331 -133446452 + (TCC)n Simple_repeat Simple_repeat 3 51 0 2 784 203 329 116 7 chr3 26153473 26153611 -133446172 + L2 LINE L2 1770 1922 -1497 2 784 314 318 78 19 chr3 26155361 26155515 -133444268 - L2a LINE L2 -13 3413 3251 2 784 333 0 0 0 chr3 26155807 26155844 -133443939 + (TG)n Simple_repeat Simple_repeat 2 38 0 2 784 468 0 0 0 chr3 26155844 26155895 -133443888 + (TA)n Simple_repeat Simple_repeat 1 52 0 2 784 371 248 46 0 chr3 26156572 26156681 -133443102 + Lx6 LINE L1 7341 7454 -6 2 784 1119 282 68 78 chr3 26157270 26157696 -133442087 + Lx8 LINE L1 6787 7208 -265 2 784 458 285 29 7 chr3 26159234 26159372 -133440411 - B1F SINE Alu -8 141 1 2 784 340 319 92 103 chr3 26159397 26159455 -133440328 + MLT1C LTR MaLR 35 92 -298 2 784 2123 178 10 13 chr3 26159455 26159847 -133439936 + ORR1B1 LTR MaLR 4 394 0 2 784 398 303 171 44 chr3 26159847 26160148 -133439635 + MLT1C LTR MaLR 93 467 0 2 784 351 348 14 22 chr3 26160687 26160825 -133438958 + B4A SINE B4 3 139 -153 2 784 187 355 137 11 chr3 26160918 26161100 -133438683 - MIR SINE MIR -4 258 54 2 784 1477 267 78 37 chr3 26161254 26161744 -133438039 + Lx8 LINE L1 6092 6601 -872 2 784 1587 88 4 30 chr3 26161734 26161969 -133437814 - L1_Mus4 LINE L1 -188 6448 6220 2 784 1026 96 0 51 chr3 26161969 26162145 -133437638 + L1_Mus4 LINE L1 6464 6630 -6 2 784 822 291 95 25 chr3 26162146 26162513 -133437270 + Lx8 LINE L1 6584 6976 -497 2 784 967 266 111 92 chr3 26162603 26162645 -133437138 - MT2A LTR ERVL 0 533 494 2 784 234 0 0 0 chr3 26162645 26162671 -133437112 + (CAGA)n Simple_repeat Simple_repeat 2 27 0 2 784 967 266 111 92 chr3 26162671 26162704 -133437079 - MT2A LTR ERVL -40 493 467 2 784 451 78 13 13 chr3 26162704 26162782 -133437001 + (TG)n Simple_repeat Simple_repeat 1 78 0 2 784 597 64 0 0 chr3 26162782 26162859 -133436924 + (GA)n Simple_repeat Simple_repeat 1 78 0 2 784 967 266 111 92 chr3 26162859 26163116 -133436667 - MT2A LTR ERVL -67 466 175 2 784 2918 70 19 12 chr3 26163116 26163534 -133436249 + BGLII LTR ERVK 1 421 0 2 784 967 266 111 92 chr3 26163534 26163719 -133436064 - MT2A LTR ERVL -359 174 5 2 784 6617 62 42 2 chr3 26163752 26164521 -133435262 + Lx3_Mus LINE L1 6089 6874 -135 2 784 198 0 0 0 chr3 26164521 26164543 -133435240 + (TGGGGG)n Simple_repeat Simple_repeat 3 24 0 2 784 6617 62 42 2 chr3 26164543 26164659 -133435124 + Lx3_Mus LINE L1 6875 7008 -1 2 784 2335 256 5 12 chr3 26164679 26165245 -133434538 + Lx9 LINE L1 6791 7352 -292 2 784 199 299 31 112 chr3 26166170 26166268 -133433515 - L2c LINE L2 -17 3370 3281 2 784 390 296 59 65 chr3 26166439 26166609 -133433174 + ID_B1 SINE B4 48 216 -8 2 784 297 128 0 0 chr3 26166610 26166657 -133433126 + (TAA)n Simple_repeat Simple_repeat 1 47 0 2 784 817 171 432 4 chr3 26166693 26166945 -133432838 + Lx9 LINE L1 7284 7643 -1 2 784 543 377 34 8 chr3 26167082 26167349 -133432434 + B4A SINE B4 1 274 -18 2 784 339 113 0 0 chr3 26167364 26167417 -133432366 + (CA)n Simple_repeat Simple_repeat 1 53 0 2 784 236 213 16 0 chr3 26168187 26168248 -133431535 + GA-rich Low_complexity Low_complexity 4 65 0 2 784 236 388 6 18 chr3 26168403 26168566 -133431217 + Tigger15a DNA TcMar 551 711 -4 2 784 1091 261 40 26 chr3 26168966 26169269 -133430514 - MTEb LTR MaLR -2 377 71 2 784 24 0 0 0 chr3 26169309 26169333 -133430450 + AT_rich Low_complexity Low_complexity 1 24 0 2 784 589 283 108 31 chr3 26170998 26171385 -133428398 - Charlie1a DNA MER1_type -7 1448 1032 2 784 832 219 91 5 chr3 26172380 26172586 -133427197 - L1_Rod LINE L1 -323 5856 5559 2 784 507 217 17 17 chr3 26172582 26172699 -133427084 + L1_Rod LINE L1 5089 5205 -642 2 784 191 239 0 21 chr3 26173561 26173608 -133426175 - MIRm SINE MIR -11 265 220 2 784 54 56 0 0 chr3 26173822 26173911 -133425872 + AT_rich Low_complexity Low_complexity 1 89 0 2 784 196 306 0 40 chr3 26173950 26174025 -133425758 - MIR SINE MIR -66 196 125 2 784 210 118 0 0 chr3 26175222 26175256 -133424527 + (GGGA)n Simple_repeat Simple_repeat 1 34 0 2 784 675 130 0 0 chr3 26175509 26175632 -133424151 + (TG)n Simple_repeat Simple_repeat 2 124 0 2 784 455 265 93 20 chr3 26175638 26175788 -133423995 - RSINE1 SINE B4 -1 164 4 2 784 22 0 0 0 chr3 26176257 26176279 -133423504 + AT_rich Low_complexity Low_complexity 1 22 0 2 784 246 32 0 0 chr3 26176737 26176768 -133423015 + (TG)n Simple_repeat Simple_repeat 1 31 0 2 784 519 17 0 0 chr3 26176768 26176827 -133422956 + (GA)n Simple_repeat Simple_repeat 1 60 0 2 784 221 136 0 43 chr3 26177441 26177487 -133422296 + (TTA)n Simple_repeat Simple_repeat 1 44 0 2 784 371 228 76 0 chr3 26177488 26177567 -133422216 - B4 SINE B4 -73 219 135 2 784 218 281 124 10 chr3 26177509 26177606 -133422177 - B1F SINE Alu -41 108 1 2 784 894 242 207 53 chr3 26177879 26178198 -133421585 + ORR1D2 LTR MaLR 1 368 -2 2 784 486 340 46 31 chr3 26178321 26178533 -133421250 - B3A SINE B2 -14 202 1 2 784 858 202 13 51 chr3 26179423 26179658 -133420125 + URR1A DNA MER1_type 1 226 0 2 784 1071 234 34 31 chr3 26179816 26180138 -133419645 + RMER6A LTR ERVK 292 614 -142 2 784 182 139 47 0 chr3 26180211 26180254 -133419529 + (TAGA)n Simple_repeat Simple_repeat 4 48 0 2 784 454 343 134 0 chr3 26180335 26180469 -133419314 + RSINE1 SINE B4 6 157 -8 2 784 4813 57 0 0 chr3 26181408 26182005 -133417778 + L1_Mus1 LINE L1 5971 6567 0 2 784 21 57 0 0 chr3 26182173 26182208 -133417575 + AT_rich Low_complexity Low_complexity 1 35 0 2 784 1433 114 60 28 chr3 26182269 26182521 -133417262 + ORR1A4 LTR MaLR 1 260 -69 2 784 543 101 0 0 chr3 26182523 26182602 -133417181 + (GGAA)n Simple_repeat Simple_repeat 2 80 0 2 784 1185 63 29 0 chr3 26182604 26182778 -133417005 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 2 784 444 37 0 0 chr3 26182794 26182848 -133416935 + ORR1A4 LTR MaLR 268 321 -8 2 784 21 36 0 0 chr3 26183103 26183131 -133416652 + AT_rich Low_complexity Low_complexity 1 28 0 2 784 410 375 13 34 chr3 26183145 26183294 -133416489 + RSINE1 SINE B4 8 153 -12 2 784 341 207 118 52 chr3 26183387 26183540 -133416243 + Lx9 LINE L1 7477 7639 -5 2 784 309 219 0 0 chr3 26183649 26183722 -133416061 + (TA)n Simple_repeat Simple_repeat 1 73 0 2 784 1066 139 36 0 chr3 26184246 26184440 -133415343 - Lx2 LINE L1 -4 6993 6793 2 784 256 161 0 0 chr3 26184442 26184498 -133415285 + Lx2 LINE L1 6942 6997 0 2 784 249 167 461 0 chr3 26185588 26185690 -133414093 + Lx4B LINE L1 6907 7055 -3 2 784 8268 54 3 1 chr3 26187437 26189179 -133410604 - L1Md_F2 LINE L1 -1 6581 4836 2 784 31304 78 5 6 chr3 26189303 26194348 -133405435 + L1Md_F2 LINE L1 548 5586 -297 2 784 7142 89 3 14 chr3 26194348 26195348 -133404435 + L1Md_F2 LINE L1 5587 6575 -7 2 784 27 0 0 0 chr3 26197921 26197948 -133401835 + AT_rich Low_complexity Low_complexity 1 27 0 2 784 395 199 116 34 chr3 26199148 26199294 -133400489 + L1MC1 LINE L1 4999 5156 -990 2 784 993 81 0 0 chr3 26199464 26199600 -133400183 + (GGAA)n Simple_repeat Simple_repeat 1 136 0 2 784 225 174 158 32 chr3 26199607 26199702 -133400081 + Lx8 LINE L1 7362 7468 -5 2 784 1375 289 102 53 chr3 26199743 26200831 -133398952 + L1MC1 LINE L1 5158 6329 -4 2 784 357 310 15 58 chr3 26201376 26201513 -133398270 - L1MC4 LINE L1 -1097 6945 6815 2 784 220 111 44 0 chr3 26201735 26201780 -133398003 + (TA)n Simple_repeat Simple_repeat 1 47 0 2 784 21 0 0 0 chr3 26202327 26202348 -133397435 + AT_rich Low_complexity Low_complexity 1 21 0 2 784 828 381 37 14 chr3 26202746 26203265 -133396518 + L2b LINE L2 2276 2806 -613 2 784 181 329 39 13 chr3 26203363 26203440 -133396343 + L2b LINE L2 2999 3077 -298 2 784 326 205 29 57 chr3 26203678 26203818 -133395965 + (TATATG)n Simple_repeat Simple_repeat 2 137 0 2 784 557 312 75 56 chr3 26203821 26204125 -133395658 - B4 SINE B4 -11 281 5 2 784 476 315 19 58 chr3 26204538 26204693 -133395090 - B3A SINE B2 -10 188 40 2 784 257 200 33 0 chr3 26204709 26204769 -133395014 - MTD LTR MaLR -20 399 338 2 784 649 198 8 0 chr3 26204776 26204902 -133394881 - RLTR15 LTR ERVK -232 127 1 2 784 1174 62 0 0 chr3 26204974 26205120 -133394663 + B1_Mus1 SINE Alu 1 146 -2 2 784 239 50 0 48 chr3 26205122 26205164 -133394619 + (CAAAAA)n Simple_repeat Simple_repeat 2 41 0 2 784 206 81 0 26 chr3 26205519 26205557 -133394226 + (TTTG)n Simple_repeat Simple_repeat 1 37 0 2 784 777 51 0 0 chr3 26205789 26205887 -133393896 + (GA)n Simple_repeat Simple_repeat 2 99 0 2 784 1110 77 34 18 chr3 26206690 26207017 -133392766 + (TAGA)n Simple_repeat Simple_repeat 1 332 0 2 784 321 26 0 0 chr3 26207552 26207590 -133392193 + (TG)n Simple_repeat Simple_repeat 2 39 0 2 784 641 224 40 20 chr3 26207592 26207742 -133392041 + ID_B1 SINE B4 51 203 -21 2 784 890 146 28 0 chr3 26207845 26207989 -133391794 - B1_Mus1 SINE Alu 0 148 1 2 784 1775 291 76 41 chr3 26209492 26210322 -133389461 - Lx7 LINE L1 -25 5855 4997 2 784 233 282 39 0 chr3 26210318 26210396 -133389387 + Lx7 LINE L1 5834 5914 -1782 2 784 995 306 107 57 chr3 26210598 26211235 -133388548 + Lx8 LINE L1 6122 6790 -683 2 784 7228 134 17 10 chr3 26211214 26213240 -133386543 + Lx LINE L1 4605 6648 -6 2 784 1387 328 72 8 chr3 26213236 26213875 -133385908 + Lx8 LINE L1 6765 7444 -29 2 784 255 93 0 0 chr3 26213947 26213990 -133385793 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 3 12 253 208 83 0 chr3 26214331 26214403 -133385380 + (TGGA)n Simple_repeat Simple_repeat 4 81 0 3 785 337 235 135 19 chr3 26215037 26215141 -133384642 - PB1D10 SINE Alu -2 118 3 3 785 249 83 0 0 chr3 26216752 26216788 -133382995 + (A)n Simple_repeat Simple_repeat 1 36 0 3 785 338 206 0 21 chr3 26217150 26217244 -133382539 + GA-rich Low_complexity Low_complexity 2 93 0 3 785 239 178 44 0 chr3 26217364 26217409 -133382374 + PB1 SINE Alu 53 99 -28 3 785 217 323 119 30 chr3 26217481 26217615 -133382168 - MIRb SINE MIR -17 251 106 3 785 1023 283 61 33 chr3 26219141 26219505 -133380278 - MTD LTR MaLR -4 415 20 3 785 3754 164 17 18 chr3 26219849 26220543 -133379240 + Lx4B LINE L1 6279 7051 -7 3 785 180 0 0 0 chr3 26220577 26220597 -133379186 + (A)n Simple_repeat Simple_repeat 1 20 0 3 785 24 0 0 0 chr3 26220621 26220645 -133379138 + AT_rich Low_complexity Low_complexity 1 24 0 3 785 367 206 0 0 chr3 26221621 26221689 -133378094 + ID4_ SINE ID 5 72 -11 3 785 23 54 0 0 chr3 26221936 26221973 -133377810 + AT_rich Low_complexity Low_complexity 1 37 0 3 785 403 305 84 111 chr3 26222763 26223313 -133376470 + Kanga1a DNA Tc2 216 750 -4 3 785 423 0 0 0 chr3 26223973 26224020 -133375763 + (TG)n Simple_repeat Simple_repeat 1 47 0 3 785 255 61 0 0 chr3 26224643 26224676 -133375107 + (CA)n Simple_repeat Simple_repeat 1 33 0 3 785 272 280 21 84 chr3 26226066 26226164 -133373619 - ID4 SINE ID -59 93 2 3 785 436 280 132 56 chr3 26227150 26227347 -133372436 + MER20 DNA MER1_type 8 219 0 3 785 360 0 0 0 chr3 26228389 26228429 -133371354 + (TAGA)n Simple_repeat Simple_repeat 2 41 0 3 785 198 103 0 0 chr3 26229349 26229378 -133370405 + (CA)n Simple_repeat Simple_repeat 1 29 0 3 785 801 31 0 0 chr3 26229647 26229743 -133370040 + (GA)n Simple_repeat Simple_repeat 1 96 0 3 785 279 93 0 0 chr3 26231303 26231346 -133368437 + (TTG)n Simple_repeat Simple_repeat 3 45 0 3 785 297 109 0 0 chr3 26232278 26232324 -133367459 + (CA)n Simple_repeat Simple_repeat 1 46 0 3 785 387 187 18 38 chr3 26233844 26233944 -133365839 + B1_Mm SINE Alu 24 119 -1 3 785 261 247 98 12 chr3 26234344 26234426 -133365357 + MTE2a LTR MaLR 1 89 -290 3 785 383 304 0 10 chr3 26234511 26234614 -133365169 - B3A SINE B2 -17 181 80 3 785 787 278 85 4 chr3 26234674 26234909 -133364874 + MTE2a LTR MaLR 126 379 0 3 785 226 298 75 0 chr3 26235014 26235108 -133364675 + MIR SINE MIR 118 218 -44 3 785 522 86 32 11 chr3 26235294 26235388 -133364395 + (TTTTC)n Simple_repeat Simple_repeat 3 98 0 3 785 469 295 39 0 chr3 26235393 26235522 -133364261 - ID_B1 SINE B4 -1 223 90 3 785 279 93 0 0 chr3 26235842 26235885 -133363898 + (TTTA)n Simple_repeat Simple_repeat 4 46 0 3 785 330 87 0 0 chr3 26237512 26237558 -133362225 + (GGGA)n Simple_repeat Simple_repeat 4 49 0 3 785 189 171 0 0 chr3 26238030 26238065 -133361718 + (TATG)n Simple_repeat Simple_repeat 2 36 0 3 785 942 234 5 0 chr3 26241189 26241390 -133358393 + B3 SINE B2 5 206 -10 3 785 816 266 60 38 chr3 26242139 26242506 -133357277 + MTEb LTR MaLR 1 375 -4 3 785 432 67 0 0 chr3 26242532 26242592 -133357191 + (TC)n Simple_repeat Simple_repeat 1 60 0 3 785 279 0 0 0 chr3 26242592 26242623 -133357160 + (TG)n Simple_repeat Simple_repeat 2 32 0 3 785 490 310 8 85 chr3 26243292 26243517 -133356266 + MLT2B4 LTR ERVL 2 207 -313 3 785 1247 21 0 7 chr3 26244609 26244755 -133355028 + B1_Mm SINE Alu 1 145 -2 3 785 882 29 0 0 chr3 26244765 26244870 -133354913 + (GAAA)n Simple_repeat Simple_repeat 3 107 0 3 785 2728 19 5 121 chr3 26245779 26246194 -133353589 + IAPLTR1_Mm LTR ERVK 1 367 0 3 785 52444 31 9 2 chr3 26246194 26252624 -133347159 + IAPEz-int LTR ERVK 8 6481 0 3 785 2714 22 5 121 chr3 26252624 26253039 -133346744 + IAPLTR1_Mm LTR ERVK 1 367 0 3 785 363 262 71 0 chr3 26253039 26253123 -133346660 + RSINE1 SINE B4 38 127 -38 3 785 366 257 69 10 chr3 26253388 26253490 -133346293 + B1_Mur3 SINE Alu 2 109 -40 3 785 658 327 14 0 chr3 26253493 26253704 -133346079 + ID_B1 SINE B4 10 223 -1 3 785 456 51 0 0 chr3 26254331 26254390 -133345393 + (CA)n Simple_repeat Simple_repeat 1 59 0 3 785 233 333 92 33 chr3 26254548 26254700 -133345083 - Tigger10 DNA Tigger -1312 531 371 3 785 233 351 70 35 chr3 26255506 26255677 -133344106 - L2 LINE L2 -2133 1286 1110 3 785 188 281 78 0 chr3 26257321 26257385 -133342398 + L2c LINE L2 3244 3312 -75 3 785 11555 68 68 2 chr3 26257997 26260392 -133339391 - L1Md_F2 LINE L1 -14 6568 3986 3 785 370 221 78 26 chr3 26260710 26260826 -133338957 - MLT1A1 LTR MaLR -2 406 285 3 785 1074 305 59 24 chr3 26261922 26262433 -133337350 + Lx8 LINE L1 6945 7473 0 3 785 26 64 0 0 chr3 26262653 26262700 -133337083 + AT_rich Low_complexity Low_complexity 1 47 0 3 785 747 324 73 47 chr3 26262878 26263260 -133336523 - MT2A LTR ERVL -141 392 1 3 785 216 0 0 0 chr3 26264590 26264614 -133335169 + (TG)n Simple_repeat Simple_repeat 2 25 0 3 785 553 242 60 90 chr3 26264782 26264982 -133334801 - B3A SINE B2 0 198 5 3 785 9935 56 0 0 chr3 26266576 26267875 -133331908 + L1Md_F2 LINE L1 4288 5586 -297 3 785 7888 52 4 2 chr3 26267875 26268869 -133330914 + L1Md_F2 LINE L1 5587 6582 0 3 785 3785 111 13 48 chr3 26268909 26269269 -133330514 - Lx LINE L1 -630 6024 5685 3 785 1382 50 0 6 chr3 26269269 26269450 -133330333 + L1Md_F3 LINE L1 6402 6581 -3 3 785 3785 145 9 32 chr3 26269450 26269933 -133329850 - Lx LINE L1 -199 5684 5196 3 785 3537 149 30 16 chr3 26269938 26270546 -133329237 + Lx LINE L1 6039 6654 0 3 785 835 278 70 12 chr3 26270721 26270979 -133328804 + B4A SINE B4 2 274 -18 3 785 201 121 0 0 chr3 26271018 26271051 -133328732 + (CATG)n Simple_repeat Simple_repeat 1 33 0 3 785 390 74 0 0 chr3 26271052 26271106 -133328677 + (CATA)n Simple_repeat Simple_repeat 1 54 0 3 785 468 72 0 0 chr3 26271107 26271176 -133328607 + (GA)n Simple_repeat Simple_repeat 2 70 0 3 785 438 282 107 41 chr3 26271850 26271989 -133327794 - Lx8 LINE L1 -2 7471 7324 3 785 435 38 0 0 chr3 26271989 26272042 -133327741 + (TCC)n Simple_repeat Simple_repeat 2 54 0 3 785 438 282 107 41 chr3 26272042 26272146 -133327637 - Lx8 LINE L1 -150 7323 7213 3 785 895 214 71 0 chr3 26272392 26272588 -133327195 - URR1A DNA MER1_type 0 226 17 3 785 800 63 9 0 chr3 26273437 26273548 -133326235 + (TCC)n Simple_repeat Simple_repeat 2 113 0 3 785 263 383 0 9 chr3 26274826 26274942 -133324841 + PB1D10 SINE Alu 3 117 0 3 785 223 294 0 0 chr3 26275199 26275250 -133324533 + (CA)n Simple_repeat Simple_repeat 2 52 0 3 785 1385 195 10 40 chr3 26275271 26275567 -133324216 + RMER10B LTR ERVL 2 288 -110 3 785 510 238 0 39 chr3 26275567 26275694 -133324089 + RLTR20C LTR ERVK 1 122 -412 3 785 929 254 44 111 chr3 26275883 26276388 -133323395 + RMER17C-int LTR ERVK 2627 3097 -141 3 785 662 230 46 67 chr3 26276584 26276822 -133322961 - RCHARR1 DNA MER1_type -15 959 727 3 785 366 23 0 0 chr3 26277804 26277847 -133321936 + (CA)n Simple_repeat Simple_repeat 2 44 0 3 785 355 313 38 25 chr3 26278854 26279090 -133320693 + L1M3c LINE L1 963 1201 -4940 3 785 369 43 0 0 chr3 26281798 26281845 -133317938 + (TG)n Simple_repeat Simple_repeat 2 48 0 3 785 1079 176 5 0 chr3 26281847 26282040 -133317743 - Lx2 LINE L1 -39 6958 6765 3 785 4815 132 13 21 chr3 26282029 26282803 -133316980 - Lx2 LINE L1 -352 6645 5878 3 785 1075 99 0 0 chr3 26282820 26282982 -133316801 - MusHAL1 LINE L1 -754 1958 1797 3 785 1057 149 58 0 chr3 26282973 26283147 -133316636 - L1VL4 LINE L1 -5928 374 191 3 785 401 272 72 62 chr3 26284878 26285086 -133314697 + Charlie1b DNA MER1_type 101 310 -213 3 785 239 209 0 0 chr3 26285086 26285129 -133314654 - Lx5 LINE L1 -364 6686 6644 3 785 3157 118 18 16 chr3 26285260 26286148 -133313635 + RLTR13C1 LTR ERVK 1 983 0 3 785 432 326 68 20 chr3 26286148 26286292 -133313491 - B3A SINE B2 -46 152 2 3 785 2207 181 42 46 chr3 26287223 26287699 -133312084 + Lx LINE L1 6181 6654 0 3 785 483 18 0 0 chr3 26288117 26288173 -133311610 + (TG)n Simple_repeat Simple_repeat 2 57 0 3 785 204 216 0 0 chr3 26288976 26289027 -133310756 + (TATATG)n Simple_repeat Simple_repeat 3 53 0 3 785 2021 179 14 19 chr3 26289043 26289413 -133310370 - ORR1C1 LTR MaLR -1 377 10 3 785 3156 199 206 6 chr3 26289417 26290199 -133309584 - ORR1C1-int LTR MaLR -484 1025 88 3 785 41210 5 0 0 chr3 26290206 26296562 -133303221 - L1Md_A LINE L1 0 6582 226 3 785 324 256 133 0 chr3 26296565 26296655 -133303128 - ORR1C1-int LTR MaLR -1268 102 1 3 785 1598 204 63 3 chr3 26296655 26297005 -133302778 - ORR1C1 LTR MaLR 0 378 8 3 785 408 40 0 0 chr3 26297012 26297062 -133302721 + (TG)n Simple_repeat Simple_repeat 2 51 0 3 785 393 314 0 0 chr3 26297150 26297255 -133302528 - B3A SINE B2 -91 107 3 3 785 1027 272 101 43 chr3 26298673 26298983 -133300800 - L1MA4A LINE L1 -375 5928 5605 3 785 645 14 0 0 chr3 26298983 26299057 -133300726 + (TTCTC)n Simple_repeat Simple_repeat 2 75 0 3 785 1027 274 112 35 chr3 26299057 26300008 -133299775 - L1MA4A LINE L1 -699 5604 4565 3 785 4683 145 81 27 chr3 26300515 26301192 -133298591 + Lx3C LINE L1 5728 6520 -461 3 785 2852 167 14 32 chr3 26301192 26301755 -133298028 - RLTR31_Mur LTR ERVK 0 553 1 3 785 4683 127 60 29 chr3 26301755 26302130 -133297653 + Lx3C LINE L1 6521 6888 -93 3 785 30 27 0 0 chr3 26302153 26302190 -133297593 + AT_rich Low_complexity Low_complexity 1 37 0 3 785 483 346 18 24 chr3 26303013 26303147 -133296636 + B3A SINE B2 18 153 -45 3 785 709 114 16 0 chr3 26303147 26303270 -133296513 + (CA)n Simple_repeat Simple_repeat 2 126 0 3 785 483 346 18 24 chr3 26303270 26303301 -133296482 + B3A SINE B2 154 182 -16 3 785 191 202 32 11 chr3 26303302 26303397 -133296386 + (CA)n Simple_repeat Simple_repeat 1 97 0 3 785 27 29 0 0 chr3 26303598 26303632 -133296151 + AT_rich Low_complexity Low_complexity 1 34 0 3 785 407 356 8 15 chr3 26303635 26303769 -133296014 + ID_B1 SINE B4 86 218 -6 3 785 476 156 0 0 chr3 26303862 26303958 -133295825 + Lx4A LINE L1 6963 7058 0 3 785 183 42 0 0 chr3 26303976 26304000 -133295783 + (TAAAAA)n Simple_repeat Simple_repeat 2 25 0 4 785 4169 239 43 8 chr3 26304791 26305907 -133293876 - Lx3C LINE L1 -2 6974 5820 4 785 18238 184 41 11 chr3 26305906 26310129 -133289654 - L1VL4 LINE L1 -674 5203 854 4 785 21 0 0 0 chr3 26310548 26310569 -133289214 + AT_rich Low_complexity Low_complexity 1 21 0 4 785 588 173 30 0 chr3 26310633 26310766 -133289017 - Lx9 LINE L1 -6 7638 7502 4 785 536 339 25 7 chr3 26310922 26311201 -133288582 + L1MA6 LINE L1 5617 5900 -400 4 785 322 276 69 20 chr3 26311241 26311444 -133288339 + L1MA6 LINE L1 6062 6274 -26 4 785 543 315 28 0 chr3 26312264 26312407 -133287376 + B3 SINE B2 13 159 -57 4 785 21 36 0 0 chr3 26312569 26312597 -133287186 + AT_rich Low_complexity Low_complexity 1 28 0 4 785 208 309 29 0 chr3 26312797 26312865 -133286918 + MIR SINE MIR 122 191 -71 4 785 197 301 27 95 chr3 26313003 26313150 -133286633 + L2 LINE L2 2810 2946 -473 4 785 351 0 0 0 chr3 26313345 26313384 -133286399 + (TTA)n Simple_repeat Simple_repeat 1 39 0 4 785 439 369 50 50 chr3 26313392 26313654 -133286129 + LTR33 LTR ERVL 1 262 -253 4 785 251 324 76 0 chr3 26313679 26313784 -133285999 + MER5A1 DNA MER1_type 8 120 -46 4 785 303 393 9 0 chr3 26314054 26314166 -133285617 - RSINE1 SINE B4 -51 114 2 4 785 595 301 142 22 chr3 26314201 26314517 -133285266 + Lx9 LINE L1 7074 7427 -217 4 785 330 115 0 0 chr3 26314522 26314574 -133285209 + (TG)n Simple_repeat Simple_repeat 2 53 0 4 785 5233 71 0 0 chr3 26314809 26315487 -133284296 - L1_Mm LINE L1 -553 5330 4653 4 785 5604 55 6 3 chr3 26315487 26316202 -133283581 + L1Md_F2 LINE L1 5864 6580 -2 4 785 260 152 51 0 chr3 26316463 26316522 -133283261 + CT-rich Low_complexity Low_complexity 3 64 0 4 785 1580 256 79 54 chr3 26316542 26317075 -133282708 - Lx7 LINE L1 -267 7429 6884 4 785 266 306 0 0 chr3 26317588 26317650 -133282133 + polypurine Low_complexity Low_complexity 4 65 0 4 785 305 237 0 0 chr3 26317702 26317761 -133282022 - PB1D7 SINE Alu -61 59 1 4 785 230 186 42 28 chr3 26317787 26317859 -133281924 + (CACTA)n Simple_repeat Simple_repeat 5 77 0 4 785 2170 297 138 84 chr3 26317870 26318847 -133280936 - Lx5 LINE L1 -16 7444 6143 4 785 3546 60 2 17 chr3 26318847 26319307 -133280476 - L1_Mus1 LINE L1 -1 6566 6114 4 785 2953 237 87 42 chr3 26319307 26320406 -133279377 - Lx5 LINE L1 -1106 6354 5270 4 785 13902 217 47 126 chr3 26320485 26323562 -133276221 + Lx3C LINE L1 802 3486 -2397 4 785 351 0 0 0 chr3 26323562 26323601 -133276182 + (TAA)n Simple_repeat Simple_repeat 1 39 0 4 785 13902 214 50 138 chr3 26323601 26324421 -133275362 + Lx3C LINE L1 3487 4292 -1591 4 785 1157 55 7 0 chr3 26324421 26324566 -133275217 + B1_Mus2 SINE Alu 1 146 -1 4 785 13902 218 75 60 chr3 26324566 26327112 -133272671 + Lx3C LINE L1 4293 7006 -2 4 785 261 304 108 30 chr3 26327101 26327267 -133272516 + L1M3 LINE L1 3504 3682 -2458 4 785 321 283 136 21 chr3 26327337 26327579 -133272204 + L1M3 LINE L1 4074 4343 -1797 4 785 576 291 7 21 chr3 26327651 26327795 -133271988 + ID_B1 SINE B4 82 223 -1 4 785 22 35 0 0 chr3 26327799 26327828 -133271955 + AT_rich Low_complexity Low_complexity 1 29 0 4 785 444 261 26 9 chr3 26328003 26328119 -133271664 + RSINE1 SINE B4 2 119 -46 4 785 207 0 0 0 chr3 26328250 26328273 -133271510 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 4 785 258 283 34 0 chr3 26328296 26328413 -133271370 + L1M3 LINE L1 4634 4767 -1379 4 785 345 305 92 75 chr3 26328398 26328970 -133270813 + L1M3 LINE L1 4646 5234 -912 4 785 201 74 0 0 chr3 26329027 26329054 -133270729 + (TA)n Simple_repeat Simple_repeat 2 28 0 4 785 729 287 51 51 chr3 26329083 26329516 -133270267 + L1M3 LINE L1 5319 5751 -432 4 785 291 28 0 0 chr3 26329791 26329827 -133269956 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 4 785 423 0 0 0 chr3 26330289 26330336 -133269447 + (TC)n Simple_repeat Simple_repeat 2 48 0 4 785 208 214 0 0 chr3 26330360 26330402 -133269381 + (CA)n Simple_repeat Simple_repeat 1 42 0 4 785 241 276 94 31 chr3 26330430 26330557 -133269226 + RMER12 LTR ERVK 695 829 -493 4 785 3588 268 38 17 chr3 26330562 26331609 -133268174 + Lx9 LINE L1 6350 7418 -226 4 785 525 16 0 0 chr3 26331609 26331671 -133268112 + (TG)n Simple_repeat Simple_repeat 2 63 0 4 785 793 273 117 25 chr3 26332002 26332276 -133267507 - RMER13A LTR ERVK -466 394 96 4 785 513 368 70 7 chr3 26333273 26333544 -133266239 + L4 LINE RTE 1462 1749 -280 4 785 216 0 0 0 chr3 26333826 26333850 -133265933 + (T)n Simple_repeat Simple_repeat 1 24 0 4 785 1216 285 34 27 chr3 26333883 26334330 -133265453 + Lx7 LINE L1 6144 6593 -1103 4 785 681 199 21 7 chr3 26334331 26334482 -133265301 + RLTR26 LTR ERVK 1 146 -760 4 785 1624 293 35 73 chr3 26334564 26335274 -133264509 + Lx7 LINE L1 6589 7271 -425 4 785 885 251 69 119 chr3 26335633 26335995 -133263788 - MTE2a LTR MaLR -35 344 1 4 785 21 36 0 0 chr3 26336119 26336147 -133263636 + AT_rich Low_complexity Low_complexity 1 28 0 4 785 560 271 15 89 chr3 26336323 26336582 -133263201 + Lx9 LINE L1 6899 7138 -506 4 785 327 132 0 0 chr3 26336799 26336867 -133262916 + (TCTG)n Simple_repeat Simple_repeat 4 71 0 4 785 3130 217 78 16 chr3 26337003 26337770 -133262013 + Lx5 LINE L1 6228 7042 -8 4 785 456 293 24 103 chr3 26337789 26337954 -133261829 - B4A SINE B4 -95 197 42 4 785 3338 35 2 2 chr3 26337954 26338350 -133261433 + MTA_Mm LTR MaLR 1 396 0 4 785 456 293 24 103 chr3 26338350 26338397 -133261386 - B4A SINE B4 -251 41 2 4 785 40 105 0 0 chr3 26339265 26339417 -133260366 + AT_rich Low_complexity Low_complexity 1 152 0 4 785 26 30 0 0 chr3 26339451 26339484 -133260299 + AT_rich Low_complexity Low_complexity 1 33 0 4 785 620 297 13 0 chr3 26339484 26339639 -133260144 - RSINE1 SINE B4 -6 159 3 4 785 308 351 0 0 chr3 26339759 26339833 -133259950 + ID SINE ID 4 77 -147 4 785 281 278 0 82 chr3 26339769 26339867 -133259916 + BC1_Mm scRNA scRNA 14 103 -49 4 785 284 271 0 54 chr3 26340153 26340227 -133259556 + ID4 SINE ID 4 73 -10 4 785 341 75 0 19 chr3 26340230 26340284 -133259499 + (TAA)n Simple_repeat Simple_repeat 1 53 0 4 785 833 309 138 50 chr3 26340619 26340889 -133258894 + MER44D DNA MER2_type 56 363 -342 4 785 486 0 0 0 chr3 26340889 26340943 -133258840 + (TAAA)n Simple_repeat Simple_repeat 3 56 0 4 785 833 309 138 50 chr3 26340943 26341268 -133258515 + MER44D DNA MER2_type 364 703 -2 4 785 437 262 118 8 chr3 26341325 26341452 -133258331 - B1_Mur2 SINE Alu -6 143 3 4 785 207 0 0 0 chr3 26341635 26341658 -133258125 + (TTG)n Simple_repeat Simple_repeat 2 24 0 4 785 282 73 0 0 chr3 26342318 26342359 -133257424 + (CA)n Simple_repeat Simple_repeat 1 41 0 4 785 504 304 106 50 chr3 26342414 26342594 -133257189 - MTE2a LTR MaLR -5 374 177 4 785 488 16 16 0 chr3 26342594 26342655 -133257128 + (TC)n Simple_repeat Simple_repeat 2 63 0 4 785 504 313 112 51 chr3 26342655 26342839 -133256944 - MTE2a LTR MaLR -198 221 25 4 785 334 267 33 11 chr3 26342872 26342963 -133256820 + URR1A DNA MER1_type 2 94 -132 4 98 39498 4 0 0 chr3 26342965 26349468 -133250315 - L1Md_A LINE L1 0 6582 80 4 786 697 216 8 52 chr3 26349468 26349685 -133250098 + URR1A DNA MER1_type 26 224 -2 4 786 369 237 47 61 chr3 26349553 26349701 -133250082 - CYRA11_Mm Unknown Y-chromosome -315 302 157 4 786 469 160 19 0 chr3 26350523 26350629 -133249154 + (CA)n Simple_repeat Simple_repeat 1 108 0 4 786 1472 275 81 11 chr3 26350931 26351634 -133248149 + RMER1B Other Other 7 502 -564 4 786 3261 177 67 22 chr3 26351602 26352319 -133247464 + RMER1A Other Other 282 1030 0 4 786 21 57 0 0 chr3 26352462 26352497 -133247286 + AT_rich Low_complexity Low_complexity 1 35 0 4 786 25 0 0 0 chr3 26353065 26353090 -133246693 + AT_rich Low_complexity Low_complexity 1 25 0 4 786 259 78 39 0 chr3 26353162 26353213 -133246570 + (TA)n Simple_repeat Simple_repeat 2 54 0 4 786 316 200 122 0 chr3 26353216 26353306 -133246477 + RMER1A Other Other 789 889 -141 4 786 699 189 3 0 chr3 26353314 26353621 -133246162 + (TAGA)n Simple_repeat Simple_repeat 1 307 0 4 786 663 205 31 0 chr3 26353623 26353750 -133246033 - B1_Mur2 SINE Alu -17 132 2 4 786 212 346 65 0 chr3 26355261 26355368 -133244415 - MIR SINE MIR -37 225 112 4 786 27 73 0 0 chr3 26355390 26355445 -133244338 + AT_rich Low_complexity Low_complexity 1 55 0 4 786 268 190 19 65 chr3 26355520 26355627 -133244156 + A-rich Low_complexity Low_complexity 5 106 0 4 786 414 321 7 0 chr3 26355713 26355850 -133243933 + B1F SINE Alu 5 142 -7 4 786 205 350 28 65 chr3 26355871 26355978 -133243805 - MIRb SINE MIR -140 128 26 4 786 207 0 0 0 chr3 26356735 26356758 -133243025 + (TCCC)n Simple_repeat Simple_repeat 1 23 0 4 786 892 169 6 6 chr3 26356758 26356937 -133242846 + CT-rich Low_complexity Low_complexity 2 180 0 4 786 554 350 29 69 chr3 26356949 26357225 -133242558 + B4 SINE B4 17 281 -11 4 786 419 155 0 12 chr3 26357278 26357363 -133242420 + (CA)n Simple_repeat Simple_repeat 2 85 0 4 786 183 80 0 0 chr3 26357737 26357762 -133242021 + (CCCCCT)n Simple_repeat Simple_repeat 2 26 0 4 786 200 278 122 27 chr3 26357820 26357894 -133241889 - L3 LINE CR1 -1102 3387 3307 4 786 314 245 73 65 chr3 26358397 26358590 -133241193 - LTR41 LTR ERVL -2 766 569 4 786 398 251 221 79 chr3 26358575 26358765 -133241018 + B4 SINE B4 56 272 -20 4 786 492 18 0 0 chr3 26358773 26358830 -133240953 + (CA)n Simple_repeat Simple_repeat 1 57 0 4 786 376 295 63 0 chr3 26358833 26358928 -133240855 - LTR41 LTR ERVL -151 617 517 4 786 382 323 74 60 chr3 26358928 26359211 -133240572 - RLTR12B LTR ERVK 0 528 242 4 786 783 237 124 52 chr3 26359232 26359295 -133240488 - RLTR12B LTR ERVK -254 314 246 4 786 750 78 0 0 chr3 26359295 26359397 -133240386 + (TC)n Simple_repeat Simple_repeat 1 102 0 4 786 783 226 113 51 chr3 26359397 26359610 -133240173 - RLTR12B LTR ERVK -323 245 11 4 786 477 360 121 16 chr3 26359622 26359879 -133239904 - LTR41 LTR ERVL -249 519 236 4 786 414 308 42 47 chr3 26362269 26362460 -133237323 - ORR1E LTR MaLR -167 192 3 4 786 566 185 127 48 chr3 26363462 26363627 -133236156 + B3A SINE B2 5 182 -16 4 786 219 167 0 0 chr3 26363627 26363669 -133236114 + (CA)n Simple_repeat Simple_repeat 1 42 0 4 786 677 340 45 0 chr3 26365210 26365410 -133234373 - ID_B1 SINE B4 -5 219 11 4 786 1597 202 14 62 chr3 26365581 26366002 -133233781 - Lx2B LINE L1 -2 6998 6598 4 786 1109 309 43 34 chr3 26366101 26366862 -133232921 + Lx9 LINE L1 6449 7234 -239 4 786 267 141 14 40 chr3 26366864 26366938 -133232845 + T-rich Low_complexity Low_complexity 2 73 0 5 786 969 265 166 19 chr3 26367039 26367382 -133232401 + MTD LTR MaLR 5 413 -6 5 786 291 316 0 0 chr3 26367382 26367461 -133232322 + (CGTG)n Simple_repeat Simple_repeat 2 80 0 5 786 318 364 80 8 chr3 26368123 26368361 -133231422 - L3 LINE CR1 -721 3768 3514 5 786 1381 229 88 75 chr3 26368890 26369483 -133230300 + RLTR31_Mur LTR ERVK 39 534 -19 5 786 22 0 0 0 chr3 26369486 26369508 -133230275 + AT_rich Low_complexity Low_complexity 1 22 0 5 786 284 278 55 96 chr3 26370021 26370218 -133229565 + MIRc SINE MIR 3 186 -90 5 786 222 257 0 0 chr3 26370256 26370404 -133229379 + (CCTG)n Simple_repeat Simple_repeat 1 148 0 5 786 261 0 0 0 chr3 26373373 26373402 -133226381 + (A)n Simple_repeat Simple_repeat 1 29 0 5 786 934 243 93 177 chr3 26373616 26374312 -133225471 - RMER1C Other Other -71 1271 634 5 786 297 292 41 7 chr3 26376062 26376207 -133223576 - L1MC4 LINE L1 -131 7911 7762 5 786 423 0 0 0 chr3 26376637 26376684 -133223099 + (TA)n Simple_repeat Simple_repeat 1 47 0 5 786 524 299 55 74 chr3 26376835 26377052 -133222731 - B3A SINE B2 -1 215 3 5 786 189 74 0 0 chr3 26377377 26377404 -133222379 + (CA)n Simple_repeat Simple_repeat 2 28 0 5 786 243 0 0 0 chr3 26378263 26378290 -133221493 + (TA)n Simple_repeat Simple_repeat 2 28 0 5 786 307 343 130 11 chr3 26379066 26379243 -133220540 + MLT1D LTR MaLR 3 200 -305 5 786 410 301 115 70 chr3 26379271 26379471 -133220312 + MLT1D LTR MaLR 278 486 -19 5 786 388 307 143 16 chr3 26380195 26380377 -133219406 + MIR SINE MIR 15 219 -43 5 786 7209 95 10 7 chr3 26381153 26382909 -133216874 + L1_Mus3 LINE L1 4870 6631 -7 5 786 198 0 0 0 chr3 26382909 26382931 -133216852 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 5 786 342 281 149 19 chr3 26383321 26383585 -133216198 + B4A SINE B4 4 287 -5 5 786 486 115 50 25 chr3 26383625 26383785 -133215998 + (CA)n Simple_repeat Simple_repeat 1 164 0 5 786 560 105 45 45 chr3 26383812 26383991 -133215792 + (CA)n Simple_repeat Simple_repeat 2 180 0 5 786 584 116 45 28 chr3 26384059 26384236 -133215547 + (CA)n Simple_repeat Simple_repeat 1 180 0 5 786 456 373 63 68 chr3 26384510 26384924 -133214859 + MLT1D-int LTR MaLR 8 419 -968 5 786 272 261 51 25 chr3 26385521 26385639 -133214144 - L1MD LINE L1 -2694 3452 3332 5 786 1425 238 10 7 chr3 26385692 26385997 -133213786 + RLTR11A LTR ERVK 220 525 -3 5 786 279 0 0 0 chr3 26386051 26386082 -133213701 + (TC)n Simple_repeat Simple_repeat 2 32 0 5 786 303 28 0 0 chr3 26386082 26386117 -133213666 + (TG)n Simple_repeat Simple_repeat 1 36 0 5 786 630 344 57 22 chr3 26386142 26386543 -133213240 - Lx8 LINE L1 -153 7320 6906 5 786 405 229 42 28 chr3 26386711 26386855 -133212928 - L1MDa LINE L1 -3127 3417 3272 5 786 236 309 73 47 chr3 26386901 26387244 -133212539 - L1MDa LINE L1 -5259 1381 1030 5 786 232 284 0 12 chr3 26387372 26387454 -133212329 - L1MDa LINE L1 -5672 875 795 5 786 450 0 0 0 chr3 26387457 26387507 -133212276 + (CA)n Simple_repeat Simple_repeat 1 50 0 5 786 189 0 0 0 chr3 26387511 26387532 -133212251 + (TG)n Simple_repeat Simple_repeat 2 22 0 5 786 3303 34 13 0 chr3 26387533 26387916 -133211867 - MTA_Mm LTR MaLR -4 392 5 5 786 648 70 0 0 chr3 26387916 26388002 -133211781 + (TA)n Simple_repeat Simple_repeat 2 87 0 5 786 763 62 4 7 chr3 26388954 26389074 -133210709 - B1_Mm SINE Alu -9 140 23 5 786 222 239 0 0 chr3 26389396 26389467 -133210316 + (CA)n Simple_repeat Simple_repeat 1 71 0 5 786 23 0 0 0 chr3 26389737 26389760 -133210023 + AT_rich Low_complexity Low_complexity 1 23 0 5 786 201 108 0 0 chr3 26389838 26389875 -133209908 + (CATA)n Simple_repeat Simple_repeat 2 38 0 5 786 243 0 0 0 chr3 26391018 26391045 -133208738 + (TA)n Simple_repeat Simple_repeat 1 27 0 5 786 282 56 0 0 chr3 26391045 26391081 -133208702 + (GA)n Simple_repeat Simple_repeat 1 36 0 5 786 186 43 0 0 chr3 26392175 26392198 -133207585 + (CA)n Simple_repeat Simple_repeat 1 23 0 5 786 29813 66 4 6 chr3 26392436 26397135 -133202648 + L1Md_F2 LINE L1 498 5183 -700 5 786 7850 59 1 3 chr3 26397142 26398135 -133201648 + L1Md_F2 LINE L1 5587 6577 -5 5 786 982 236 19 48 chr3 26398302 26398573 -133201210 - Lx5 LINE L1 0 7050 6788 5 786 216 0 0 0 chr3 26400237 26400261 -133199522 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 5 786 267 322 52 5 chr3 26400918 26401130 -133198653 - L1M1 LINE L1 -415 5888 5667 5 786 288 367 132 5 chr3 26401387 26401584 -133198199 - B4A SINE B4 -10 282 61 5 786 553 182 71 28 chr3 26401593 26401734 -133198049 + RLTR31_Mur LTR ERVK 1 147 -406 5 786 781 213 32 114 chr3 26401720 26402001 -133197782 + RLTR31_Mur LTR ERVK 292 549 -4 5 786 3399 23 8 0 chr3 26403327 26403720 -133196063 - MTA_Mm LTR MaLR 0 396 1 5 786 271 259 24 12 chr3 26404502 26404584 -133195199 - ID_B1 SINE B4 -18 206 124 5 786 832 171 104 0 chr3 26404605 26404769 -133195014 - B2_Mm2 SINE B2 -14 181 1 5 786 332 22 0 22 chr3 26404945 26404991 -133194792 + (TG)n Simple_repeat Simple_repeat 2 46 0 5 786 397 304 126 13 chr3 26404992 26405304 -133194479 - Lx9 LINE L1 -237 7407 7061 5 786 359 296 0 0 chr3 26405339 26405420 -133194363 - ID SINE ID -142 82 2 5 786 1677 56 0 5 chr3 26405925 26406141 -133193642 + L1_Mus2 LINE L1 6352 6566 0 5 786 2655 62 79 3 chr3 26406159 26406528 -133193255 + L1_Mus3 LINE L1 6242 6638 0 5 786 414 0 0 0 chr3 26406609 26406655 -133193128 + (CA)n Simple_repeat Simple_repeat 2 47 0 5 786 280 35 86 0 chr3 26408403 26408461 -133191322 + (TAA)n Simple_repeat Simple_repeat 3 65 0 5 786 200 305 17 0 chr3 26408823 26408882 -133190901 - L2c LINE L2 -39 3348 3289 5 786 848 258 188 4 chr3 26410194 26410466 -133189317 - MTEa LTR MaLR 0 379 58 5 786 528 280 38 0 chr3 26411236 26411368 -133188415 + RSINE1 SINE B4 4 140 -25 5 786 308 391 17 9 chr3 26411767 26411883 -133187900 + B3A SINE B2 2 118 -80 5 786 272 306 0 0 chr3 26411930 26412002 -133187781 + B4A SINE B4 198 269 -23 5 786 333 0 0 0 chr3 26412074 26412111 -133187672 + (CA)n Simple_repeat Simple_repeat 1 37 0 5 786 22 35 0 0 chr3 26412611 26412640 -133187143 + AT_rich Low_complexity Low_complexity 1 29 0 5 786 315 0 0 0 chr3 26412640 26412675 -133187108 + (CAA)n Simple_repeat Simple_repeat 2 36 0 5 786 841 255 19 14 chr3 26412763 26412978 -133186805 + B3 SINE B2 1 216 0 5 786 233 321 42 9 chr3 26413097 26413311 -133186472 + L1MEe LINE L1 929 1149 -3705 5 786 437 158 10 0 chr3 26413445 26413546 -133186237 + (TG)n Simple_repeat Simple_repeat 2 103 0 5 786 252 0 0 0 chr3 26413658 26413686 -133186097 + (TAGA)n Simple_repeat Simple_repeat 3 30 0 5 786 21 36 0 0 chr3 26413738 26413766 -133186017 + AT_rich Low_complexity Low_complexity 1 28 0 5 786 254 216 154 51 chr3 26413960 26414077 -133185706 - MLT1B LTR MaLR -215 175 47 5 786 233 316 24 37 chr3 26414238 26414320 -133185463 - ID4 SINE ID -2 81 1 5 786 468 259 43 96 chr3 26414540 26414728 -133185055 + B4A SINE B4 2 179 -113 5 786 2917 94 7 15 chr3 26414754 26415164 -133184619 + MTB_Mm LTR MaLR 1 407 0 5 786 2148 81 84 43 chr3 26415196 26415543 -133184240 - RLTR10B2 LTR ERVK 0 365 5 5 786 281 28 0 0 chr3 26415542 26415578 -133184205 - RLTR10B2 LTR ERVK -256 36 1 5 786 459 0 0 0 chr3 26415768 26415819 -133183964 + (TTTA)n Simple_repeat Simple_repeat 2 52 0 5 786 1088 94 0 0 chr3 26415819 26415957 -133183826 - B1_Mus1 SINE Alu -10 138 1 5 786 390 338 7 73 chr3 26416254 26416404 -133183379 - RSINE1 SINE B4 0 165 26 5 786 409 327 123 25 chr3 26416738 26417186 -133182597 + L1M5 LINE L1 3015 3506 -2640 5 786 343 277 158 34 chr3 26417289 26417498 -133182285 + B4A SINE B4 35 269 -23 5 786 450 161 0 0 chr3 26417542 26417654 -133182129 + CT-rich Low_complexity Low_complexity 1 112 0 5 786 194 0 39 0 chr3 26418635 26418661 -133181122 + (TTA)n Simple_repeat Simple_repeat 1 27 0 5 786 3673 83 2 22 chr3 26418661 26419203 -133180580 - L1Md_F2 LINE L1 -23 6559 6029 5 786 310 339 17 42 chr3 26419499 26419619 -133180164 + B3 SINE B2 10 126 -90 5 786 227 292 41 10 chr3 26420683 26420780 -133179003 + L1M5 LINE L1 4201 4300 -1846 5 786 398 350 61 14 chr3 26420796 26421074 -133178709 + B4A SINE B4 2 292 0 5 786 3680 214 62 80 chr3 26421082 26422016 -133177767 + RMER13B LTR ERVK 2 908 0 5 786 455 171 14 0 chr3 26422018 26422088 -133177695 - tRNA-Lys-AAG tRNA tRNA 0 76 6 5 786 766 299 118 69 chr3 26422217 26422565 -133177218 - MTE2a LTR MaLR -9 370 6 5 786 408 274 34 8 chr3 26422647 26422765 -133177018 + B3 SINE B2 96 216 0 5 786 235 375 18 46 chr3 26422906 26423015 -133176768 + RMER12 LTR ERVK 746 851 -471 5 786 207 0 0 0 chr3 26423015 26423038 -133176745 + (CA)n Simple_repeat Simple_repeat 2 24 0 5 786 333 0 0 0 chr3 26423037 26423074 -133176709 + (TA)n Simple_repeat Simple_repeat 1 37 0 5 786 219 125 0 0 chr3 26423178 26423218 -133176565 + (TA)n Simple_repeat Simple_repeat 2 41 0 5 786 306 0 0 0 chr3 26423294 26423328 -133176455 + (TA)n Simple_repeat Simple_repeat 1 34 0 5 786 314 295 15 127 chr3 26423698 26423958 -133175825 + L1M5 LINE L1 5036 5266 -880 5 786 252 270 61 45 chr3 26424182 26424314 -133175469 + L1M5 LINE L1 5535 5668 -511 5 786 209 167 19 0 chr3 26424331 26424385 -133175398 + GA-rich Low_complexity Low_complexity 2 56 0 5 786 318 289 9 28 chr3 26424398 26424505 -133175278 + GA-rich Low_complexity Low_complexity 3 107 0 5 786 891 0 0 0 chr3 26425282 26425381 -133174402 + (TTC)n Simple_repeat Simple_repeat 3 101 0 5 786 693 49 29 0 chr3 26425384 26425486 -133174297 + (TC)n Simple_repeat Simple_repeat 1 105 0 5 786 302 357 38 22 chr3 26426085 26426400 -133173383 + L1M5 LINE L1 5522 5841 -399 5 786 21 36 0 0 chr3 26426542 26426570 -133173213 + AT_rich Low_complexity Low_complexity 1 28 0 5 786 1139 75 0 0 chr3 26426861 26427007 -133172776 + B1_Mm SINE Alu 2 147 0 5 786 210 37 0 0 chr3 26427225 26427252 -133172531 + (TTTTTG)n Simple_repeat Simple_repeat 4 30 0 5 786 390 351 22 22 chr3 26428449 26428583 -133171200 - RSINE1 SINE B4 -28 137 4 5 786 825 272 15 0 chr3 26428675 26428881 -133170902 - B3 SINE B2 -6 210 2 5 786 252 59 0 0 chr3 26429073 26429107 -133170676 + (TTTTG)n Simple_repeat Simple_repeat 3 36 0 6 786 419 342 65 20 chr3 26429444 26429644 -133170139 - B4A SINE B4 -76 216 8 6 786 254 372 83 6 chr3 26431438 26431595 -133168188 + MER5A DNA MER1_type 21 189 0 6 786 1038 271 45 0 chr3 26431798 26432067 -133167716 - B4A SINE B4 -4 288 8 6 786 253 330 99 44 chr3 26432200 26432381 -133167402 + MER21B LTR ERV1 55 245 -618 6 786 377 288 126 0 chr3 26432602 26432713 -133167070 + MER21B LTR ERV1 544 668 -195 6 786 323 316 191 54 chr3 26432930 26433228 -133166555 + MLT1A LTR MaLR 35 373 -1 6 786 664 330 155 49 chr3 26433295 26433945 -133165838 + MLT-int LTR MaLR 78 796 -939 6 786 389 281 62 0 chr3 26434069 26434165 -133165618 - PB1 SINE Alu -11 116 15 6 786 337 295 52 64 chr3 26434810 26434939 -133164844 + B1F SINE Alu 24 148 -1 6 786 315 49 0 0 chr3 26435582 26435623 -133164160 + (TC)n Simple_repeat Simple_repeat 2 42 0 6 786 303 149 0 0 chr3 26435623 26435697 -133164086 + (TA)n Simple_repeat Simple_repeat 2 75 0 6 786 232 250 139 0 chr3 26436365 26436473 -133163310 - Tigger6b DNA MER2_type -7 1590 1468 6 786 696 294 28 0 chr3 26436478 26436658 -133163125 + ID_B1 SINE B4 2 186 -38 6 786 5011 124 10 44 chr3 26436658 26437295 -133162488 + L1VL2 LINE L1 177 796 -5539 6 786 2438 114 5 3 chr3 26437295 26437674 -133162109 + L1_Mus3 LINE L1 6258 6637 -1 6 786 7311 111 18 8 chr3 26437674 26439039 -133160744 + L1VL2 LINE L1 797 2165 -1450 6 786 7762 42 1 0 chr3 26439036 26440399 -133159384 - L1Md_F2 LINE L1 -1 6581 5216 6 786 13697 128 26 3 chr3 26440401 26442783 -133157000 + L1_Mus3 LINE L1 2477 4913 -970 6 786 29 70 0 0 chr3 26442851 26442908 -133156875 + AT_rich Low_complexity Low_complexity 1 57 0 6 786 1088 140 5 0 chr3 26443561 26443754 -133156029 + L1_Mus3 LINE L1 4913 5106 -777 6 786 551 56 0 0 chr3 26443751 26443823 -133155960 + L1_Mus2 LINE L1 5841 5912 -726 6 786 3554 86 15 37 chr3 26443827 26444370 -133155413 + L1_Mus2 LINE L1 6036 6566 0 6 786 7150 95 22 6 chr3 26444740 26446255 -133153528 + L1_Mus3 LINE L1 5091 6638 0 6 786 10762 102 20 16 chr3 26446244 26448054 -133151729 + MusHAL1 LINE L1 144 1961 -751 6 786 234 125 0 0 chr3 26448054 26448102 -133151681 + (A)n Simple_repeat Simple_repeat 1 48 0 6 786 2576 121 9 24 chr3 26448105 26448528 -133151255 + Lx3B LINE L1 6556 6972 -1 6 786 433 0 17 17 chr3 26448533 26448591 -133151192 + (TAA)n Simple_repeat Simple_repeat 2 59 0 6 786 346 193 12 12 chr3 26448728 26448812 -133150971 + Lx7 LINE L1 7613 7696 0 6 786 288 388 0 33 chr3 26449335 26449455 -133150328 + ID_B1 SINE B4 94 209 -15 6 786 384 22 0 0 chr3 26449456 26449501 -133150282 + (TTTG)n Simple_repeat Simple_repeat 1 45 0 6 786 248 279 33 55 chr3 26449518 26449609 -133150174 - Tigger6b DNA MER2_type -275 1322 1234 6 786 1575 300 162 38 chr3 26449685 26450850 -133148933 + Lx9 LINE L1 6320 7629 -15 6 786 341 275 58 0 chr3 26450889 26451009 -133148774 - Tigger6b DNA MER2_type -370 1227 1101 6 786 1134 313 72 12 chr3 26451183 26451694 -133148089 - Tigger6a DNA MER2_type -469 614 73 6 786 846 291 32 48 chr3 26451956 26452270 -133147513 + MTE-int LTR MaLR 1204 1512 -68 6 786 2416 76 24 6 chr3 26452801 26453134 -133146649 - L1_Mus1 LINE L1 0 6567 6229 6 786 228 106 61 0 chr3 26453159 26453225 -133146558 + T-rich Low_complexity Low_complexity 2 71 0 6 786 207 0 0 0 chr3 26453384 26453407 -133146376 + (CA)n Simple_repeat Simple_repeat 2 24 0 6 786 1056 101 0 0 chr3 26454955 26455094 -133144689 + B1_Mus2 SINE Alu 3 141 -6 6 786 23 0 0 0 chr3 26455104 26455127 -133144656 + AT_rich Low_complexity Low_complexity 1 23 0 6 786 737 148 134 37 chr3 26455787 26456004 -133143779 - Lx2 LINE L1 0 6997 6760 6 786 184 93 70 0 chr3 26456088 26456131 -133143652 + A-rich Low_complexity Low_complexity 4 49 0 6 786 458 259 58 53 chr3 26456221 26456401 -133143382 + MER5A1 DNA MER1_type 7 189 0 6 786 365 267 6 0 chr3 26456853 26457018 -133142765 + (TG)n Simple_repeat Simple_repeat 1 166 0 6 786 227 167 56 0 chr3 26457039 26457093 -133142690 + GA-rich Low_complexity Low_complexity 5 61 0 6 786 3076 249 55 23 chr3 26457645 26458517 -133141266 + Lx6 LINE L1 6392 7291 -169 6 786 270 0 0 0 chr3 26458526 26458556 -133141227 + (TGAA)n Simple_repeat Simple_repeat 1 30 0 6 786 279 304 22 0 chr3 26458613 26458705 -133141078 + Lx7 LINE L1 7206 7299 -397 6 786 315 0 0 0 chr3 26458726 26458761 -133141022 + (TTTTG)n Simple_repeat Simple_repeat 5 39 0 6 786 455 0 18 0 chr3 26458762 26458817 -133140966 + (TG)n Simple_repeat Simple_repeat 2 57 0 6 786 44 20 0 0 chr3 26458986 26459037 -133140746 + AT_rich Low_complexity Low_complexity 1 51 0 6 786 677 269 121 56 chr3 26459993 26460326 -133139457 - MTE2b LTR MaLR 0 379 5 6 786 427 152 27 86 chr3 26460774 26461022 -133138761 + (AGCTG)n Simple_repeat Simple_repeat 1 233 0 6 786 370 171 28 66 chr3 26461053 26461235 -133138548 + (AGCTG)n Simple_repeat Simple_repeat 3 177 0 6 786 320 195 29 63 chr3 26461247 26461422 -133138361 + (AGCTG)n Simple_repeat Simple_repeat 3 171 0 6 786 771 84 0 0 chr3 26461749 26461856 -133137927 - Lx3_Mus LINE L1 -1155 5854 5748 6 786 6510 137 13 25 chr3 26461856 26462961 -133136822 + Lx3A LINE L1 5879 6969 -12 6 786 270 0 0 0 chr3 26462961 26462991 -133136792 + (TTAA)n Simple_repeat Simple_repeat 1 30 0 6 786 22 0 0 0 chr3 26462993 26463015 -133136768 + AT_rich Low_complexity Low_complexity 1 22 0 6 786 7779 42 7 3 chr3 26463171 26464299 -133135484 - L1Md_F2 LINE L1 -1 6581 5446 6 786 339 167 0 0 chr3 26464327 26464393 -133135390 + CT-rich Low_complexity Low_complexity 2 67 0 6 786 635 54 11 0 chr3 26464417 26464509 -133135274 + (TCTA)n Simple_repeat Simple_repeat 2 94 0 6 786 235 261 46 0 chr3 26464526 26464591 -133135192 + (TCTCTG)n Simple_repeat Simple_repeat 3 70 0 6 786 510 330 29 32 chr3 26464858 26465202 -133134581 + MER31-int LTR ERV1 594 936 -4000 6 786 1560 268 43 62 chr3 26465363 26466040 -133133743 + MER31-int LTR ERV1 3545 4208 -728 6 786 685 368 103 10 chr3 26466283 26466670 -133133113 - MLT2B2 LTR ERVL -71 444 22 6 786 459 0 0 0 chr3 26467024 26467075 -133132708 + (CATA)n Simple_repeat Simple_repeat 2 52 0 6 786 194 0 0 37 chr3 26467157 26467184 -133132599 + (TTA)n Simple_repeat Simple_repeat 2 27 0 6 786 414 0 0 0 chr3 26467675 26467721 -133132062 + (TG)n Simple_repeat Simple_repeat 2 47 0 6 786 537 281 12 18 chr3 26468067 26468230 -133131553 + RSINE1 SINE B4 2 163 -2 6 786 743 196 15 0 chr3 26468287 26468420 -133131363 + ORR1B2 LTR MaLR 9 143 -224 6 786 2938 32 12 0 chr3 26468423 26468765 -133131018 - ORR1A0 LTR MaLR 0 346 1 6 786 5998 46 14 1 chr3 26468765 26469529 -133130254 - ORR1A0-int LTR MaLR 0 1792 1019 6 786 1116 48 0 0 chr3 26469518 26469663 -133130120 - ORR1A0-int LTR MaLR -1647 145 1 6 786 2779 33 0 9 chr3 26469667 26470008 -133129775 - ORR1A0 LTR MaLR -8 338 1 6 786 1090 204 26 13 chr3 26470008 26470231 -133129552 + ORR1B2 LTR MaLR 142 367 0 6 786 2492 181 16 33 chr3 26470231 26470741 -133129042 + ORR1B2-int LTR MaLR 1 501 -1008 6 786 2083 109 3 70 chr3 26470737 26471093 -133128690 - IAPLTR1a_Mm LTR ERVK -5 332 1 6 98 55178 14 2 0 chr3 26471093 26477527 -133122256 - IAPEz-int LTR ERVK 0 6481 35 6 787 2103 106 3 70 chr3 26477539 26477895 -133121888 - IAPLTR1a_Mm LTR ERVK -5 332 1 6 787 2373 232 107 18 chr3 26477895 26478523 -133121260 + ORR1B2-int LTR MaLR 490 1181 -328 6 787 628 45 23 0 chr3 26478523 26478611 -133121172 + (TGGA)n Simple_repeat Simple_repeat 1 90 0 6 787 2373 232 107 18 chr3 26478611 26478665 -133121118 + ORR1B2-int LTR MaLR 1182 1233 -276 6 787 65 14 0 0 chr3 26478962 26479034 -133120749 + AT_rich Low_complexity Low_complexity 1 72 0 6 787 491 344 86 0 chr3 26479250 26479413 -133120370 + ORR1B2 LTR MaLR 10 186 -173 6 787 1824 173 56 3 chr3 26479511 26479848 -133119935 - ORR1B2 LTR MaLR -12 355 1 6 787 331 200 0 0 chr3 26479854 26479914 -133119869 - ORR1B2-int LTR MaLR -6 1364 1305 6 787 4192 199 85 10 chr3 26479915 26481298 -133118485 - Lx6 LINE L1 -771 6689 4948 6 787 321 323 76 38 chr3 26481985 26482117 -133117666 + ID_B1 SINE B4 81 217 -7 6 787 324 0 0 0 chr3 26482531 26482567 -133117216 + (TG)n Simple_repeat Simple_repeat 2 37 0 6 787 320 322 67 0 chr3 26482574 26482664 -133117119 - RSINE1 SINE B4 -48 117 22 6 787 540 301 44 14 chr3 26483267 26483480 -133116303 - MIRc SINE MIR -19 249 39 6 787 193 324 67 13 chr3 26483728 26483803 -133115980 + MIRb SINE MIR 47 125 -143 6 787 485 273 96 22 chr3 26484182 26484317 -133115466 + RSINE1 SINE B4 7 151 -14 6 787 396 0 0 0 chr3 26484317 26484361 -133115422 + (CA)n Simple_repeat Simple_repeat 2 45 0 6 787 209 281 15 15 chr3 26484539 26484604 -133115179 + CT-rich Low_complexity Low_complexity 1 65 0 6 787 297 275 0 42 chr3 26484677 26484772 -133115011 + MLT1A1 LTR MaLR 300 390 -18 6 787 250 328 43 0 chr3 26485143 26485259 -133114524 + (TG)n Simple_repeat Simple_repeat 2 122 0 6 787 679 278 47 67 chr3 26485317 26485614 -133114169 - B4A SINE B4 0 292 2 6 787 1800 195 70 16 chr3 26485753 26486139 -133113644 - MTB_Mm LTR MaLR 0 407 1 6 787 333 294 46 0 chr3 26486941 26487050 -133112733 - ORR1E LTR MaLR -242 117 4 6 787 544 247 111 5 chr3 26487050 26487239 -133112544 - ORR1E-int LTR MaLR -50 1530 1343 6 787 427 294 89 11 chr3 26487239 26487418 -133112365 + B3A SINE B2 4 196 -2 6 787 29 28 0 0 chr3 26487427 26487463 -133112320 + AT_rich Low_complexity Low_complexity 1 36 0 6 787 1249 187 74 0 chr3 26487514 26487597 -133112186 - Lx9 LINE L1 -127 7517 7431 6 787 330 26 0 0 chr3 26487597 26487636 -133112147 + (TG)n Simple_repeat Simple_repeat 2 40 0 6 787 1249 218 37 4 chr3 26487636 26488085 -133111698 - Lx9 LINE L1 -214 7430 6930 6 787 5346 118 8 19 chr3 26488178 26489642 -133110141 + L1VL1 LINE L1 205 1650 -2048 6 787 1755 308 65 86 chr3 26489701 26490597 -133109186 - ORR1E-int LTR MaLR -432 938 62 6 787 779 308 92 12 chr3 26490660 26490986 -133108797 - ORR1E LTR MaLR -3 356 5 6 787 5467 31 0 0 chr3 26491259 26491896 -133107887 - L1Md_T LINE L1 -1 6581 5945 6 787 5496 20 0 1 chr3 26491897 26492598 -133107185 + L1Md_T LINE L1 5223 5922 -660 6 787 245 229 99 14 chr3 26493048 26493119 -133106664 + MTD LTR MaLR 18 94 -327 6 787 547 244 127 6 chr3 26493122 26493287 -133106496 + MTD LTR MaLR 235 419 0 6 787 201 197 0 0 chr3 26493466 26493537 -133106246 + (TA)n Simple_repeat Simple_repeat 1 71 0 6 787 21 0 0 0 chr3 26493748 26493769 -133106014 + AT_rich Low_complexity Low_complexity 1 21 0 6 787 2419 236 105 133 chr3 26494523 26495727 -133104056 + RMER1A Other Other 16 868 -162 6 787 405 58 0 0 chr3 26495727 26495779 -133104004 + (TGG)n Simple_repeat Simple_repeat 1 52 0 6 787 2419 231 64 154 chr3 26495779 26495916 -133103867 + RMER1A Other Other 869 1024 -6 6 787 222 239 0 0 chr3 26495939 26496010 -133103773 + (TA)n Simple_repeat Simple_repeat 1 71 0 6 787 38 68 0 0 chr3 26496215 26496288 -133103495 + AT_rich Low_complexity Low_complexity 1 73 0 6 787 251 301 151 62 chr3 26496355 26496660 -133103123 - Zaphod DNA Tip100 -3232 799 468 6 787 316 342 76 51 chr3 26496825 26496982 -133102801 - Zaphod DNA Tip100 -3796 235 75 6 787 22 0 0 0 chr3 26497454 26497476 -133102307 + AT_rich Low_complexity Low_complexity 1 22 0 6 787 357 145 0 0 chr3 26497835 26497897 -133101886 + (TA)n Simple_repeat Simple_repeat 2 63 0 6 787 25 0 0 0 chr3 26497996 26498021 -133101762 + AT_rich Low_complexity Low_complexity 1 25 0 6 787 456 19 0 0 chr3 26498544 26498597 -133101186 + (CA)n Simple_repeat Simple_repeat 2 54 0 6 787 441 0 0 0 chr3 26499105 26499154 -133100629 + (CA)n Simple_repeat Simple_repeat 2 50 0 7 787 395 19 19 0 chr3 26499241 26499293 -133100490 + (TTG)n Simple_repeat Simple_repeat 2 54 0 7 787 1479 6 0 0 chr3 26499661 26499834 -133099949 - L1Md_T LINE L1 0 6582 6410 7 787 335 342 47 51 chr3 26500064 26500320 -133099463 + L1MCa LINE L1 771 1025 -5483 1 787 244 326 44 59 chr3 26501418 26501757 -133098026 + L1MCa LINE L1 1128 1461 -4956 1 787 332 192 10 0 chr3 26501900 26502004 -133097779 + (TG)n Simple_repeat Simple_repeat 1 105 0 2 787 242 304 137 60 chr3 26502021 26502041 -133097742 - B3A SINE B2 -16 182 164 3 787 924 131 0 0 chr3 26502041 26502216 -133097567 + (TG)n Simple_repeat Simple_repeat 2 176 0 4 787 242 304 137 60 chr3 26502216 26502363 -133097420 - B3A SINE B2 -35 163 2 3 787 615 156 0 0 chr3 26502531 26502653 -133097130 + (CA)n Simple_repeat Simple_repeat 1 122 0 5 787 298 29 0 0 chr3 26502706 26502741 -133097042 + L1Md_A LINE L1 5552 5586 -297 6 787 8806 15 0 0 chr3 26502741 26503737 -133096046 + L1Md_A LINE L1 5587 6582 0 6 787 864 265 111 25 chr3 26503866 26504209 -133095574 - MTC LTR MaLR -31 390 22 7 787 294 303 128 25 chr3 26504309 26504474 -133095309 + ORR1E LTR MaLR 1 181 -189 8 787 393 286 65 52 chr3 26504906 26505061 -133094722 + MER117 DNA MER1_type 6 162 -35 9 787 504 285 109 104 chr3 26505217 26505620 -133094163 - ORR1E LTR MaLR -2 368 9 1 787 247 253 120 54 chr3 26505730 26505822 -133093961 + MTEa LTR MaLR 22 119 -302 1 787 523 283 0 9 chr3 26505834 26505941 -133093842 - B1F SINE Alu -41 108 3 1 787 463 321 95 32 chr3 26506017 26506429 -133093354 - Lx9 LINE L1 -29 7615 7178 1 787 468 302 0 8 chr3 26507496 26507616 -133092167 - ID_B1 SINE B4 -25 199 81 1 787 384 289 50 97 chr3 26507658 26507935 -133091848 + MTEa LTR MaLR 88 379 0 1 787 236 238 0 0 chr3 26508634 26508697 -133091086 + RCHARR1 DNA MER1_type 761 823 -151 1 787 1706 160 17 17 chr3 26508700 26509044 -133090739 - RMER1C Other Other -1 1341 998 1 787 321 26 0 0 chr3 26509071 26509109 -133090674 + (TA)n Simple_repeat Simple_repeat 2 39 0 1 787 1025 99 0 0 chr3 26509193 26509345 -133090438 - L1_Mus2 LINE L1 0 6566 6415 1 787 365 264 115 0 chr3 26509355 26509503 -133090280 - RMER1C Other Other -359 983 819 1 787 263 164 12 48 chr3 26509932 26510015 -133089768 + (TATAA)n Simple_repeat Simple_repeat 4 83 0 2 787 3577 65 11 2 chr3 26510029 26510490 -133089293 - L1_Mus1 LINE L1 0 6567 6103 2 787 4478 100 26 57 chr3 26510490 26510734 -133089049 + L1_Mus1 LINE L1 5136 5379 -504 2 787 6823 34 6 0 chr3 26510734 26511547 -133088236 + L1Md_F3 LINE L1 5752 6569 -15 2 787 4478 67 8 19 chr3 26511547 26512250 -133087533 + L1_Mus1 LINE L1 5380 6059 -508 2 787 365 302 11 55 chr3 26512250 26512432 -133087351 - Kanga1 DNA Tc2 -35 1710 1537 2 787 343 313 158 51 chr3 26512405 26512678 -133087105 - Kanga1 DNA Tc2 -1432 313 11 2 787 440 321 25 146 chr3 26512868 26513189 -133086594 - B4A SINE B4 -10 282 1 2 787 1010 47 16 2 chr3 26513510 26513646 -133086137 - MTA_Mm LTR MaLR 0 396 236 2 787 2433 27 0 0 chr3 26513646 26513938 -133085845 - L1Md_F2 LINE L1 -175 5708 5417 2 787 6830 50 2 2 chr3 26513938 26514791 -133084992 + L1Md_F2 LINE L1 5712 6564 -18 2 787 375 41 0 0 chr3 26514791 26514840 -133084943 + (TA)n Simple_repeat Simple_repeat 1 49 0 2 787 2318 48 3 0 chr3 26514840 26515129 -133084654 - MTA_Mm LTR MaLR -106 290 1 2 787 9147 39 0 1 chr3 26515129 26516228 -133083555 - MTA_Mm-int LTR MaLR 0 1098 1 2 787 3459 20 5 0 chr3 26516228 26516622 -133083161 - MTA_Mm LTR MaLR 0 396 1 2 787 327 49 0 0 chr3 26516730 26516771 -133083012 + (GA)n Simple_repeat Simple_repeat 2 42 0 2 787 477 0 0 0 chr3 26516771 26516824 -133082959 + (GGAA)n Simple_repeat Simple_repeat 2 54 0 3 787 1487 11 11 0 chr3 26516841 26517017 -133082766 + (GAAA)n Simple_repeat Simple_repeat 3 180 0 3 787 453 289 72 95 chr3 26517021 26517368 -133082415 - MLT1F2 LTR MaLR -120 440 21 3 787 28 48 0 0 chr3 26518309 26518351 -133081432 + AT_rich Low_complexity Low_complexity 1 42 0 3 787 21 0 0 0 chr3 26519064 26519085 -133080698 + AT_rich Low_complexity Low_complexity 1 21 0 3 787 497 106 21 0 chr3 26519121 26519215 -133080568 + (TCTA)n Simple_repeat Simple_repeat 2 97 0 3 787 979 123 141 0 chr3 26520516 26520686 -133079097 - B2_Mm2 SINE B2 -1 194 1 3 787 607 309 54 8 chr3 26520965 26521181 -133078602 + B3A SINE B2 2 216 0 3 787 235 255 216 20 chr3 26521684 26521832 -133077951 + L2 LINE L2 1284 1460 -1959 3 787 492 18 0 0 chr3 26521856 26521913 -133077870 + (GA)n Simple_repeat Simple_repeat 1 57 0 3 787 942 171 0 0 chr3 26522007 26522183 -133077600 + CT-rich Low_complexity Low_complexity 3 178 0 4 787 410 260 65 8 chr3 26522216 26522340 -133077443 - ID_B1 SINE B4 0 224 94 4 787 180 332 119 81 chr3 26522496 26523017 -133076766 + L2 LINE L2 1964 2504 -915 3 787 234 300 12 0 chr3 26523071 26523151 -133076632 + (TATG)n Simple_repeat Simple_repeat 3 83 0 4 787 1646 250 148 33 chr3 26523195 26523683 -133076100 - RMER19B LTR ERVK 0 902 359 4 787 598 277 28 0 chr3 26525085 26525262 -133074521 - MER53 DNA hAT 0 193 12 4 787 573 298 82 0 chr3 26525335 26525493 -133074290 - ID_B1 SINE B4 -49 175 5 4 787 700 248 146 55 chr3 26526469 26526810 -133072973 + MLT2B4 LTR ERVL 223 680 -37 4 787 202 200 62 26 chr3 26526820 26526933 -133072850 + (TCTA)n Simple_repeat Simple_repeat 1 117 0 4 787 238 380 0 17 chr3 26527410 26527525 -133072258 + MER63B DNA AcHobo 288 400 -36 4 787 355 261 94 78 chr3 26528618 26528809 -133070974 + B3A SINE B2 1 194 -4 4 787 22 0 0 0 chr3 26530035 26530057 -133069726 + AT_rich Low_complexity Low_complexity 1 22 0 5 787 953 50 43 0 chr3 26530132 26530293 -133069490 + (TAGA)n Simple_repeat Simple_repeat 1 168 0 5 787 376 51 34 0 chr3 26530310 26530369 -133069414 + (TAGA)n Simple_repeat Simple_repeat 4 64 0 5 787 1036 50 31 0 chr3 26530386 26530546 -133069237 + (TAGA)n Simple_repeat Simple_repeat 4 168 0 5 787 1043 45 26 0 chr3 26530563 26530717 -133069066 + (TAGA)n Simple_repeat Simple_repeat 4 161 0 5 787 570 127 24 0 chr3 26530729 26530855 -133068928 + (TAGA)n Simple_repeat Simple_repeat 1 129 0 5 787 1950 57 8 0 chr3 26530906 26531171 -133068612 - L1_Mus3 LINE L1 -686 5952 5686 5 787 4730 97 6 1 chr3 26531171 26531835 -133067948 + L1_Mus3 LINE L1 5969 6635 -3 5 787 2249 303 81 15 chr3 26531835 26532963 -133066820 + Lx8 LINE L1 6247 7448 -25 5 787 426 295 71 84 chr3 26533051 26533373 -133066410 + L1MD LINE L1 3737 4054 -2092 5 787 1485 252 13 54 chr3 26533384 26533529 -133066254 + ORR1D2 LTR MaLR 1 143 -227 5 787 1498 199 57 19 chr3 26533529 26533897 -133065886 + RLTR14 LTR ERV1 1 382 0 5 787 1485 242 6 117 chr3 26533897 26534145 -133065638 + ORR1D2 LTR MaLR 144 379 0 5 787 489 331 58 28 chr3 26534213 26534881 -133064902 + L1M5 LINE L1 4127 4814 -1332 5 787 1041 111 13 7 chr3 26534881 26535183 -133064600 + (GA)n Simple_repeat Simple_repeat 1 304 0 5 787 984 309 46 7 chr3 26535600 26535880 -133063903 + B4 SINE B4 1 291 -1 5 787 225 0 0 0 chr3 26536521 26536546 -133063237 + (T)n Simple_repeat Simple_repeat 1 25 0 6 787 506 250 31 39 chr3 26537149 26537278 -133062505 + B1F SINE Alu 2 129 -20 6 787 342 0 0 0 chr3 26537327 26537365 -133062418 + (CA)n Simple_repeat Simple_repeat 2 39 0 6 787 1103 175 0 98 chr3 26537377 26537611 -133062172 - URR1A DNA MER1_type -14 212 2 6 787 249 335 77 24 chr3 26538636 26538844 -133060939 + Lx8 LINE L1 7253 7471 -2 6 787 213 261 0 0 chr3 26540254 26540300 -133059483 + C-rich Low_complexity Low_complexity 1 46 0 6 787 616 302 22 0 chr3 26541603 26541785 -133057998 + B3 SINE B2 1 186 -30 6 787 441 54 0 0 chr3 26541785 26541841 -133057942 + (CA)n Simple_repeat Simple_repeat 2 57 0 6 787 395 348 26 10 chr3 26542193 26542604 -133057179 - L1MEg LINE L1 -590 5583 5167 6 787 277 325 53 48 chr3 26543154 26543361 -133056422 - L1MEg LINE L1 -1274 4872 4665 6 787 364 359 59 53 chr3 26543379 26543700 -133056083 - L1MEg LINE L1 -3382 2764 2442 6 787 230 333 35 0 chr3 26543979 26544066 -133055717 + RMER15 LTR ERVL 381 470 -105 6 787 571 252 16 0 chr3 26544171 26544294 -133055489 + RSINE1 SINE B4 25 149 -16 7 787 279 0 0 0 chr3 26544300 26544331 -133055452 + (CA)n Simple_repeat Simple_repeat 1 31 0 7 787 376 43 0 0 chr3 26544370 26544416 -133055367 + L1Md_A LINE L1 5541 5586 -297 7 787 8798 14 1 0 chr3 26544416 26545409 -133054374 + L1Md_A LINE L1 5587 6580 -2 7 787 29 0 0 0 chr3 26545466 26545495 -133054288 + AT_rich Low_complexity Low_complexity 1 29 0 7 787 394 296 139 22 chr3 26545814 26545994 -133053789 - LTR50 LTR ERVL -594 201 1 7 787 396 297 57 23 chr3 26546035 26546300 -133053483 - L1MEg LINE L1 -3804 2362 2089 6 787 380 278 48 37 chr3 26546603 26546790 -133052993 - L1MEg LINE L1 -4280 1962 1774 6 787 2769 264 83 25 chr3 26546823 26547806 -133051977 - Lx8 LINE L1 -2 7471 6432 7 787 331 319 79 7 chr3 26547979 26548118 -133051665 - L1MEg LINE L1 -5110 1132 984 6 787 3780 159 11 19 chr3 26548140 26548805 -133050978 - Lx LINE L1 0 6654 5996 7 787 255 59 49 0 chr3 26548811 26548856 -133050927 - Lx2 LINE L1 -1093 5915 5861 7 787 8489 85 57 15 chr3 26548852 26550092 -133049691 - L1VL4 LINE L1 -1227 2332 1031 7 787 469 42 0 27 chr3 26550092 26550166 -133049617 + (TTTTG)n Simple_repeat Simple_repeat 2 73 0 7 787 8489 110 29 5 chr3 26550166 26550940 -133048843 - L1VL4 LINE L1 -2529 1030 243 7 787 258 285 47 58 chr3 26550942 26551132 -133048651 - L1MEg LINE L1 -5268 974 787 6 787 284 236 165 22 chr3 26551334 26551425 -133048358 - B1_Mur2 SINE Alu -45 104 1 8 787 1417 210 163 0 chr3 26551446 26551784 -133047999 - MTD LTR MaLR 0 419 27 8 787 229 262 58 109 chr3 26551667 26551791 -133047992 - MT2A LTR ERVL -395 138 21 8 787 651 26 0 0 chr3 26551791 26551868 -133047915 + (GAAA)n Simple_repeat Simple_repeat 4 80 0 8 787 229 262 58 109 chr3 26551868 26551880 -133047903 - MT2A LTR ERVL -513 20 9 8 787 399 311 15 0 chr3 26553336 26553468 -133046315 + (TATG)n Simple_repeat Simple_repeat 2 135 0 8 787 413 322 97 28 chr3 26553469 26553686 -133046097 - B4A SINE B4 -4 288 57 8 787 224 100 0 24 chr3 26553976 26554017 -133045766 + (TA)n Simple_repeat Simple_repeat 2 41 0 8 787 248 268 14 0 chr3 26554450 26554521 -133045262 + L1MC4 LINE L1 7539 7610 -432 8 787 1112 144 119 0 chr3 26554522 26554724 -133045059 + URR1A DNA MER1_type 1 226 0 8 787 348 349 54 104 chr3 26554725 26555167 -133044616 + L1MC4 LINE L1 7605 8024 -18 8 787 198 0 0 0 chr3 26555440 26555462 -133044321 + (TG)n Simple_repeat Simple_repeat 2 23 0 8 787 2303 265 21 34 chr3 26555475 26556178 -133043605 + Lx9 LINE L1 6683 7376 -268 9 787 211 205 0 0 chr3 26557511 26557550 -133042233 + B1_Mus2 SINE Alu 16 54 -93 9 787 222 213 0 0 chr3 26557554 26557601 -133042182 + GA-rich Low_complexity Low_complexity 4 50 0 9 787 635 124 0 20 chr3 26557603 26557702 -133042081 + B1_Mur4 SINE Alu 43 139 -11 9 787 222 332 196 31 chr3 26557932 26558249 -133041534 - L2 LINE L2 -682 2737 2369 9 787 2109 179 10 21 chr3 26558769 26559158 -133040625 - MTC LTR MaLR -33 388 4 9 787 361 287 60 30 chr3 26561525 26561658 -133038125 + B1F SINE Alu 13 149 0 9 787 686 244 126 22 chr3 26561686 26561908 -133037875 + Lx9 LINE L1 5791 6035 -1609 9 787 2562 134 104 0 chr3 26561918 26562352 -133037431 + Lx9 LINE L1 7159 7637 -7 9 787 1062 225 39 27 chr3 26562461 26562721 -133037062 - Lx9 LINE L1 -271 7373 7111 9 787 463 173 58 0 chr3 26562721 26562825 -133036958 + Lx9 LINE L1 7534 7643 -1 1 787 321 155 0 0 chr3 26563682 26563740 -133036043 + (CA)n Simple_repeat Simple_repeat 1 58 0 1 787 261 0 0 0 chr3 26564509 26564538 -133035245 + (TC)n Simple_repeat Simple_repeat 2 30 0 1 787 351 0 0 0 chr3 26564538 26564576 -133035207 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 787 606 292 71 36 chr3 26564576 26564800 -133034983 - B4A SINE B4 -26 266 35 1 787 198 0 0 0 chr3 26564952 26564974 -133034809 + (T)n Simple_repeat Simple_repeat 1 22 0 1 787 1005 33 0 0 chr3 26567977 26568098 -133031685 + (GA)n Simple_repeat Simple_repeat 2 122 0 1 787 308 141 0 30 chr3 26568605 26568671 -133031112 + C-rich Low_complexity Low_complexity 1 64 0 1 787 189 109 61 30 chr3 26569226 26569292 -133030491 + (TA)n Simple_repeat Simple_repeat 1 68 0 1 787 588 134 16 89 chr3 26569679 26569802 -133029981 + ORR1C1 LTR MaLR 1 114 -280 1 787 1282 152 159 9 chr3 26569860 26570093 -133029690 - ORR1C1 LTR MaLR 0 378 111 1 787 549 273 65 1 chr3 26570246 26570391 -133029392 + B3A SINE B2 2 160 -56 1 787 279 0 0 0 chr3 26570391 26570422 -133029361 + (CA)n Simple_repeat Simple_repeat 2 32 0 1 787 470 315 82 16 chr3 26570422 26570460 -133029323 + B3 SINE B2 161 197 -19 1 787 270 68 102 0 chr3 26570463 26570522 -133029261 + (CAGAGA)n Simple_repeat Simple_repeat 2 66 0 1 787 270 306 62 62 chr3 26571190 26571319 -133028464 + MER5A1 DNA MER1_type 31 159 -7 1 787 2081 199 20 5 chr3 26571887 26572292 -133027491 - MTD LTR MaLR -8 411 1 1 787 263 50 50 0 chr3 26572401 26572441 -133027342 + (CAAAAA)n Simple_repeat Simple_repeat 2 43 0 1 787 323 305 145 7 chr3 26572450 26572602 -133027181 - Charlie18a DNA MER1_type -169 173 1 1 787 347 219 0 10 chr3 26573142 26573239 -133026544 + (TA)n Simple_repeat Simple_repeat 2 97 0 1 787 210 37 0 0 chr3 26573289 26573316 -133026467 + (CA)n Simple_repeat Simple_repeat 2 28 0 1 787 478 290 161 44 chr3 26573316 26573462 -133026321 - Lx8 LINE L1 -1564 5909 5761 1 787 606 63 0 0 chr3 26573462 26573541 -133026242 + (TA)n Simple_repeat Simple_repeat 2 80 0 1 787 478 313 191 31 chr3 26573541 26573778 -133026005 - Lx8 LINE L1 -120 5760 5465 1 787 440 242 41 41 chr3 26573829 26574001 -133025782 + L1M2 LINE L1 5272 5443 -848 1 787 1562 311 101 29 chr3 26575335 26576193 -133023590 - Lx8 LINE L1 -2 7471 6552 1 787 248 298 84 28 chr3 26577841 26577948 -133021835 + PB1D7 SINE Alu 7 119 -1 1 787 24 0 0 0 chr3 26579266 26579290 -133020493 + AT_rich Low_complexity Low_complexity 1 24 0 1 787 353 216 11 0 chr3 26579387 26579475 -133020308 + (TA)n Simple_repeat Simple_repeat 2 90 0 1 787 2265 300 104 18 chr3 26579757 26579777 -133020006 - Lx9 LINE L1 -139 7505 7486 1 787 606 82 0 0 chr3 26579777 26579862 -133019921 + (TG)n Simple_repeat Simple_repeat 2 86 0 1 787 258 32 0 0 chr3 26579870 26579901 -133019882 + (CA)n Simple_repeat Simple_repeat 2 32 0 1 787 2265 300 104 18 chr3 26579901 26580891 -133018892 - Lx9 LINE L1 -167 7477 6401 1 787 310 243 1 61 chr3 26581055 26581148 -133018635 + B4 SINE B4 3 91 -201 1 787 269 304 29 0 chr3 26581189 26581258 -133018525 + RSINE1 SINE B4 79 149 -16 1 787 190 228 19 29 chr3 26582230 26582334 -133017449 + GA-rich Low_complexity Low_complexity 1 103 0 1 787 509 259 0 6 chr3 26582715 26582890 -133016893 + GA-rich Low_complexity Low_complexity 3 176 0 1 787 191 36 36 0 chr3 26584694 26584722 -133015061 + (GAAA)n Simple_repeat Simple_repeat 4 32 0 1 787 636 81 0 0 chr3 26584776 26584863 -133014920 + (TA)n Simple_repeat Simple_repeat 2 88 0 1 787 9803 111 11 4 chr3 26586390 26588569 -133011214 - L1_Mus3 LINE L1 -6 6632 4439 1 787 9653 122 12 19 chr3 26588561 26590899 -133008884 - L1VL2 LINE L1 -1227 2388 61 1 787 294 81 31 31 chr3 26591091 26591155 -133008628 + (TTTTTG)n Simple_repeat Simple_repeat 3 66 0 1 787 248 333 104 7 chr3 26591262 26591416 -133008367 - MIR SINE MIR -81 181 13 1 787 1338 92 0 0 chr3 26592416 26592677 -133007106 + (GGA)n Simple_repeat Simple_repeat 1 261 0 1 787 404 267 116 32 chr3 26593242 26593397 -133006386 - B4 SINE B4 -18 274 107 1 787 351 0 0 0 chr3 26593609 26593648 -133006135 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 787 342 341 192 19 chr3 26593925 26594248 -133005535 - MLT1D LTR MaLR -4 501 123 1 787 414 314 114 59 chr3 26594423 26594677 -133005106 - LTR40b LTR ERVL -29 433 166 1 787 665 254 293 10 chr3 26594689 26595000 -133004783 + MTD LTR MaLR 19 417 -2 1 787 240 331 68 38 chr3 26595006 26595138 -133004645 - LTR40b LTR ERVL -295 167 32 1 787 322 236 14 0 chr3 26596259 26596331 -133003452 + PB1D10 SINE Alu 24 96 -21 1 787 236 300 19 39 chr3 26596339 26596431 -133003352 + B4 SINE B4 1 90 -202 1 787 3506 159 29 43 chr3 26596431 26597082 -133002701 + RLTR26 LTR ERVK 1 642 0 1 787 662 320 13 27 chr3 26597082 26597287 -133002496 + B4A SINE B4 87 288 -4 1 787 221 0 35 0 chr3 26598004 26598033 -133001750 + (TTTG)n Simple_repeat Simple_repeat 3 32 0 1 787 35354 75 20 10 chr3 26598036 26604038 -132995745 - L1Md_F2 LINE L1 -12 6570 503 1 787 1565 165 0 0 chr3 26604034 26604301 -132995482 - L1Md_F2 LINE L1 -5986 630 364 1 787 296 250 0 0 chr3 26605419 26605499 -132994284 + Lx7 LINE L1 7601 7680 -16 1 787 415 325 0 31 chr3 26605714 26605844 -132993939 + RSINE1 SINE B4 39 164 -1 1 787 621 305 44 68 chr3 26606413 26606708 -132993075 + MER115 DNA Tip100 406 693 0 1 787 846 258 162 78 chr3 26607098 26607498 -132992285 - Lx8 LINE L1 -2 7471 7038 1 788 206 116 23 0 chr3 26608374 26608417 -132991366 + (TCTCCC)n Simple_repeat Simple_repeat 6 49 0 1 788 237 270 27 13 chr3 26608918 26608993 -132990790 + CT-rich Low_complexity Low_complexity 2 77 0 1 788 516 16 0 0 chr3 26609679 26609740 -132990043 + (CA)n Simple_repeat Simple_repeat 1 61 0 1 788 704 292 33 19 chr3 26610005 26610218 -132989565 - ID_B1 SINE B4 -1 223 8 1 788 634 218 0 22 chr3 26610642 26610825 -132988958 + (CATA)n Simple_repeat Simple_repeat 1 179 0 1 788 288 283 0 0 chr3 26610828 26610888 -132988895 + (CA)n Simple_repeat Simple_repeat 1 60 0 1 788 198 0 0 0 chr3 26611935 26611957 -132987826 + (A)n Simple_repeat Simple_repeat 1 22 0 1 788 1280 165 14 19 chr3 26611967 26612183 -132987600 + B3 SINE B2 2 216 0 1 788 333 0 0 0 chr3 26612606 26612643 -132987140 + (TAAA)n Simple_repeat Simple_repeat 1 37 0 1 788 332 314 146 17 chr3 26612810 26612988 -132986795 + MIRb SINE MIR 56 256 -12 1 788 249 109 18 35 chr3 26616491 26616548 -132983235 + GA-rich Low_complexity Low_complexity 2 57 0 1 788 268 288 83 83 chr3 26616751 26616895 -132982888 + MIRb SINE MIR 117 260 -8 1 788 234 259 68 17 chr3 26617973 26618032 -132981751 + tRNA-Ala-GCY_ tRNA tRNA 5 66 -9 1 788 220 296 111 96 chr3 26618665 26618886 -132980897 + MIRc SINE MIR 16 250 -18 1 788 392 166 86 0 chr3 26619283 26619446 -132980337 + (CTAGG)n Simple_repeat Simple_repeat 4 180 0 1 788 225 358 47 9 chr3 26619447 26619554 -132980229 - B1_Mur2 SINE Alu -37 112 2 1 788 609 272 40 29 chr3 26619554 26619636 -132980147 - B4 SINE B4 -208 84 1 1 788 369 232 20 59 chr3 26619825 26619926 -132979857 + PB1D10 SINE Alu 21 117 0 1 788 627 130 0 0 chr3 26620040 26620140 -132979643 + (GGAA)n Simple_repeat Simple_repeat 2 101 0 1 788 24 0 0 0 chr3 26620392 26620416 -132979367 + AT_rich Low_complexity Low_complexity 1 24 0 1 788 839 236 199 4 chr3 26620804 26621055 -132978728 + ORR1D1 LTR MaLR 75 374 0 1 788 663 84 0 0 chr3 26621517 26621612 -132978171 + (GA)n Simple_repeat Simple_repeat 2 96 0 1 788 1335 207 83 48 chr3 26622466 26622817 -132976966 - ORR1D2 LTR MaLR -7 363 1 1 788 473 182 14 35 chr3 26623000 26623087 -132976696 + polypurine Low_complexity Low_complexity 1 84 0 1 788 282 87 0 0 chr3 26623087 26623133 -132976650 + (TG)n Simple_repeat Simple_repeat 1 46 0 1 788 473 182 14 35 chr3 26623133 26623187 -132976596 + polypurine Low_complexity Low_complexity 85 138 0 1 788 605 263 0 0 chr3 26623227 26623341 -132976442 - B1_Mur3 SINE Alu -29 120 7 1 788 1806 126 89 0 chr3 26623345 26623647 -132976136 + ORR1A4 LTR MaLR 1 329 0 1 788 324 281 83 35 chr3 26623667 26623811 -132975972 - L1MD LINE L1 -3324 2822 2672 1 788 1034 49 19 14 chr3 26623811 26624020 -132975763 + (CTGTG)n Simple_repeat Simple_repeat 1 210 0 1 788 1166 29 22 17 chr3 26624065 26624243 -132975540 + (CTGTG)n Simple_repeat Simple_repeat 2 180 0 1 788 1325 29 21 4 chr3 26624259 26624543 -132975240 + (CTGTG)n Simple_repeat Simple_repeat 1 289 0 1 788 275 303 93 19 chr3 26625088 26625260 -132974523 - ORR1E LTR MaLR -167 192 8 1 788 243 0 0 0 chr3 26625683 26625710 -132974073 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 788 1020 62 47 0 chr3 26625710 26625839 -132973944 - B1_Mus1 SINE Alu -9 139 5 1 788 195 186 0 0 chr3 26627446 26627489 -132972294 + (CATATA)n Simple_repeat Simple_repeat 5 47 0 1 788 329 247 20 27 chr3 26627494 26627644 -132972139 - Lx9 LINE L1 -129 7515 7367 1 788 23 0 0 0 chr3 26627662 26627685 -132972098 + AT_rich Low_complexity Low_complexity 1 23 0 1 788 6649 167 52 28 chr3 26627685 26629034 -132970749 - Lx4A LINE L1 -3 7055 5675 1 788 2725 128 10 6 chr3 26629031 26629512 -132970271 - Lx4A LINE L1 -800 5077 4595 1 788 1710 294 142 23 chr3 26629503 26630574 -132969209 - Lx9 LINE L1 -289 7355 6158 1 788 538 294 20 0 chr3 26631055 26631208 -132968575 + LTR90B LTR LTR 641 796 0 1 788 213 39 0 0 chr3 26632034 26632060 -132967723 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 1 788 6467 103 45 4 chr3 26632572 26632788 -132966995 - L1_Mus3 LINE L1 -4 6634 6386 1 788 405 0 0 0 chr3 26632788 26632833 -132966950 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 788 6467 107 42 4 chr3 26632833 26633682 -132966101 - L1_Mus3 LINE L1 -253 6385 5528 1 788 13634 132 165 28 chr3 26633684 26638219 -132961564 - L1_Mus3 LINE L1 -1089 4797 366 1 788 275 71 24 0 chr3 26639116 26639158 -132960625 + (ATG)n Simple_repeat Simple_repeat 3 45 0 1 788 588 294 16 5 chr3 26641794 26641982 -132957801 + Lx8 LINE L1 6806 6995 -478 1 788 237 357 38 53 chr3 26641982 26642115 -132957668 + RLTR26 LTR ERVK 482 612 -30 1 788 364 331 118 15 chr3 26642118 26642388 -132957395 + Lx8 LINE L1 7147 7444 -29 1 788 6092 83 104 51 chr3 26643559 26644068 -132955715 - RLTR13D5 LTR ERVK -4 1019 430 2 788 716 144 17 8 chr3 26644068 26644187 -132955596 + PB1D9 SINE Alu 1 120 0 2 788 6092 83 104 51 chr3 26644187 26644644 -132955139 - RLTR13D5 LTR ERVK -594 429 1 2 788 1177 272 47 11 chr3 26644946 26645306 -132954477 + Lx8 LINE L1 6728 7100 -373 2 788 836 239 45 160 chr3 26645384 26645600 -132954183 + ORR1D2 LTR MaLR 1 174 -196 2 788 546 16 0 0 chr3 26645600 26645663 -132954120 + (TC)n Simple_repeat Simple_repeat 1 63 0 2 788 836 239 45 160 chr3 26645663 26645864 -132953919 + ORR1D2 LTR MaLR 175 370 0 2 788 735 116 0 0 chr3 26645961 26646073 -132953710 + (CA)n Simple_repeat Simple_repeat 1 112 0 2 788 22 99 0 0 chr3 26646227 26646298 -132953485 + AT_rich Low_complexity Low_complexity 1 71 0 2 788 224 211 0 14 chr3 26646498 26646570 -132953213 + GA-rich Low_complexity Low_complexity 1 71 0 2 788 440 274 53 0 chr3 26646609 26646722 -132953061 - PB1 SINE Alu -7 120 2 2 788 527 306 177 20 chr3 26647510 26647854 -132951929 - Lx8 LINE L1 -244 7229 6832 2 788 695 246 10 12 chr3 26647872 26648034 -132951749 - ID_B1 SINE B4 -41 251 88 2 788 21 0 0 0 chr3 26649005 26649026 -132950757 + AT_rich Low_complexity Low_complexity 1 21 0 2 788 343 247 169 62 chr3 26649460 26649637 -132950146 - B3A SINE B2 -1 197 2 2 788 3189 242 91 34 chr3 26649699 26650775 -132949008 - Charlie1a DNA MER1_type -5 1450 314 2 788 1947 296 69 35 chr3 26651336 26651694 -132948089 + Lx8 LINE L1 6411 6776 -697 2 788 3436 15 5 12 chr3 26651694 26652093 -132947690 - MTA_Mm LTR MaLR 0 396 1 2 788 1947 296 69 35 chr3 26652093 26652638 -132947145 + Lx8 LINE L1 6777 7344 -129 2 788 1052 255 47 4 chr3 26652690 26652946 -132946837 + ORR1D2 LTR MaLR 1 267 -103 2 788 289 290 43 0 chr3 26653142 26653211 -132946572 + tRNA-Ala-GCG tRNA tRNA 1 72 -3 2 788 246 258 32 0 chr3 26653778 26653840 -132945943 + L2b LINE L2 3308 3371 -4 2 788 194 200 0 48 chr3 26656439 26656481 -132943302 - L3 LINE CR1 -2752 1737 1698 2 788 440 217 0 9 chr3 26656824 26656931 -132942852 - L1MB2 LINE L1 -28 6143 6038 2 788 1776 153 60 0 chr3 26656931 26657245 -132942538 + ORR1B2 LTR MaLR 27 359 -8 2 788 362 211 22 39 chr3 26657778 26657960 -132941823 + (TATG)n Simple_repeat Simple_repeat 2 180 0 2 788 225 197 0 0 chr3 26657987 26658048 -132941735 + (TG)n Simple_repeat Simple_repeat 2 62 0 2 788 886 283 44 91 chr3 26658176 26658561 -132941222 - MTE2a LTR MaLR -10 369 3 2 788 413 302 82 35 chr3 26658570 26658924 -132940859 - L1M3 LINE L1 -544 5645 5272 2 788 267 324 8 67 chr3 26659734 26659853 -132939930 + LTR40b LTR ERVL 346 457 -5 2 788 298 341 154 22 chr3 26659887 26660160 -132939623 - L3 LINE CR1 -35 4454 4146 2 788 3711 74 71 2 chr3 26660381 26660905 -132938878 + RLTR13C2 LTR ERVK 1 872 -242 2 788 37247 45 12 3 chr3 26660905 26667116 -132932667 - L1Md_T LINE L1 -33 6549 323 2 788 1830 102 31 41 chr3 26667116 26667433 -132932350 + RLTR13C2 LTR ERVK 495 808 0 2 788 585 0 0 0 chr3 26668093 26668158 -132931625 + (TC)n Simple_repeat Simple_repeat 1 65 0 2 788 595 325 68 21 chr3 26668467 26668975 -132930808 + L1M5 LINE L1 4140 4658 -1488 2 788 670 248 14 0 chr3 26669191 26669332 -132930451 + B1_Mur1 SINE Alu 7 149 0 2 788 292 231 92 0 chr3 26669411 26669476 -132930307 + PB1D7 SINE Alu 10 80 -40 2 788 302 306 15 15 chr3 26669482 26669618 -132930165 + L1M5 LINE L1 5529 5664 -515 2 788 2360 265 19 15 chr3 26670245 26671084 -132928699 + RMER1C Other Other 53 997 -345 2 788 819 301 24 16 chr3 26671119 26671372 -132928411 + MER2 DNA MER2_type 91 345 0 2 788 24 0 0 0 chr3 26671480 26671504 -132928279 + AT_rich Low_complexity Low_complexity 1 24 0 2 788 2442 199 44 23 chr3 26672165 26672736 -132927047 + Lx9 LINE L1 7062 7644 0 2 788 21 0 0 0 chr3 26676064 26676085 -132923698 + AT_rich Low_complexity Low_complexity 1 21 0 2 788 25 0 0 0 chr3 26677030 26677055 -132922728 + AT_rich Low_complexity Low_complexity 1 25 0 2 788 181 0 69 0 chr3 26677681 26677710 -132922073 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2 788 1037 264 70 12 chr3 26677814 26678071 -132921712 + B4A SINE B4 5 276 -16 2 788 420 55 0 0 chr3 26678086 26678141 -132921642 + (CA)n Simple_repeat Simple_repeat 2 56 0 2 788 504 149 0 0 chr3 26678459 26678553 -132921230 + (TTGG)n Simple_repeat Simple_repeat 2 95 0 2 788 821 155 0 8 chr3 26679498 26679628 -132920155 - B1_Mur4 SINE Alu -21 129 1 2 788 405 242 22 101 chr3 26679505 26679643 -132920140 - MT2B LTR ERVL -323 278 152 2 788 261 248 35 0 chr3 26679861 26679937 -132919846 - L1MA9 LINE L1 -379 5933 5848 2 788 618 280 23 0 chr3 26680122 26680297 -132919486 - L1MA9 LINE L1 -1088 5055 4877 2 788 229 235 20 0 chr3 26680297 26680348 -132919435 - B3 SINE B2 -135 81 30 2 788 546 16 0 0 chr3 26680355 26680418 -132919365 + (TG)n Simple_repeat Simple_repeat 1 63 0 2 788 3113 29 3 0 chr3 26680418 26680759 -132919024 + ORR1A0 LTR MaLR 5 346 0 2 788 684 159 0 0 chr3 26680759 26680897 -132918886 + (TG)n Simple_repeat Simple_repeat 2 139 0 2 788 683 263 37 26 chr3 26680963 26681154 -132918629 - B3A SINE B2 0 198 6 2 788 2555 292 61 55 chr3 26681189 26682766 -132917017 - L1MA9 LINE L1 -1296 4847 3261 2 788 399 320 7 7 chr3 26682768 26682916 -132916867 + L1_Mur3 LINE L1 3897 4044 -1836 2 788 33979 48 34 6 chr3 26682922 26688180 -132911603 + L1Md_T LINE L1 89 5589 -297 2 788 8967 33 0 1 chr3 26688180 26689177 -132910606 + L1Md_T LINE L1 5590 6585 0 2 788 1360 286 135 28 chr3 26689197 26689227 -132910556 + L1_Mur3 LINE L1 4034 4063 -1817 2 788 2392 84 15 61 chr3 26689227 26689570 -132910213 - ORR1A2 LTR MaLR 0 327 1 2 788 1360 286 135 28 chr3 26689570 26690117 -132909666 + L1_Mur3 LINE L1 4064 4638 -1242 2 788 8793 40 0 2 chr3 26690117 26691102 -132908681 + L1Md_F2 LINE L1 5588 6570 -12 2 788 1360 286 135 28 chr3 26691102 26691523 -132908260 + L1_Mur3 LINE L1 4639 5140 -740 2 788 885 60 0 8 chr3 26691657 26691767 -132908016 + B1_Mm SINE Alu 27 136 -11 2 788 225 65 0 0 chr3 26691767 26691798 -132907985 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 2 788 773 277 109 51 chr3 26691809 26692384 -132907399 + L1MA5A LINE L1 5311 5930 -370 2 788 216 179 0 0 chr3 26694351 26694390 -132905393 + (TG)n Simple_repeat Simple_repeat 1 39 0 2 788 765 264 0 35 chr3 26694393 26694562 -132905221 - RSINE1 SINE B4 -1 164 2 2 788 729 267 53 5 chr3 26696842 26697030 -132902753 + B3A SINE B2 1 197 -1 2 788 1422 189 14 18 chr3 26697201 26697476 -132902307 - Lx6 LINE L1 -677 6783 6510 2 788 449 293 0 0 chr3 26697743 26697835 -132901948 + B4A SINE B4 4 95 -197 2 788 680 291 21 0 chr3 26697835 26697976 -132901807 + RSINE1 SINE B4 2 145 -20 2 788 534 16 0 0 chr3 26697979 26698042 -132901741 + (CA)n Simple_repeat Simple_repeat 2 64 0 2 788 803 260 58 39 chr3 26698062 26698270 -132901513 + B4A SINE B4 81 292 0 2 788 280 319 25 49 chr3 26698638 26698760 -132901023 + MIRb SINE MIR 150 268 0 2 788 1042 236 19 0 chr3 26698791 26698999 -132900784 + B3 SINE B2 1 212 -4 2 788 402 323 76 8 chr3 26699053 26699184 -132900599 + B3 SINE B2 1 140 -76 2 788 655 131 48 12 chr3 26699190 26699593 -132900190 + GA-rich Low_complexity Low_complexity 1 417 0 2 788 313 254 0 0 chr3 26700259 26700322 -132899461 + MIRc SINE MIR 90 152 -116 2 788 1003 276 34 64 chr3 26700353 26700651 -132899132 + B4A SINE B4 4 292 0 2 788 194 303 30 0 chr3 26700690 26700756 -132899027 + MIRb SINE MIR 182 249 -19 2 788 306 303 100 55 chr3 26701240 26701460 -132898323 - L1M5 LINE L1 -820 5326 5097 2 788 1087 163 64 0 chr3 26701468 26701670 -132898113 - MTD LTR MaLR 0 419 205 2 788 1145 95 0 6 chr3 26701670 26701840 -132897943 + (TTCTC)n Simple_repeat Simple_repeat 1 169 0 2 788 1117 39 0 0 chr3 26702097 26702226 -132897557 - L1_Mm LINE L1 -300 5583 5455 2 788 2624 34 10 0 chr3 26702226 26702523 -132897260 + L1Md_F3 LINE L1 6271 6570 -14 2 788 659 267 117 14 chr3 26702530 26702733 -132897050 - MTD LTR MaLR -209 210 5 2 788 426 276 10 48 chr3 26702749 26702852 -132896931 + RSINE1 SINE B4 59 157 -8 2 788 24 0 0 0 chr3 26702854 26702878 -132896905 + AT_rich Low_complexity Low_complexity 1 24 0 2 788 395 290 63 40 chr3 26703030 26703253 -132896530 - L1M5 LINE L1 -1279 4867 4640 2 788 904 228 61 4 chr3 26703634 26703881 -132895902 + L1MC4a LINE L1 6944 7204 -678 2 788 458 252 0 71 chr3 26703879 26704020 -132895763 + L1MC1 LINE L1 1 131 -6377 2 788 549 305 77 54 chr3 26704050 26704348 -132895435 + L1MC1 LINE L1 474 778 -5730 2 788 868 285 82 10 chr3 26704363 26704668 -132895115 + L1MC1 LINE L1 828 1154 -5354 2 788 1274 158 40 9 chr3 26704696 26704919 -132894864 - Lx4B LINE L1 -305 6753 6524 2 788 985 189 47 69 chr3 26704916 26705149 -132894634 + Lx5 LINE L1 6823 7050 0 2 788 401 352 50 16 chr3 26705266 26705448 -132894335 - MLT1A1 LTR MaLR -219 189 2 2 788 1375 339 69 42 chr3 26705448 26706237 -132893546 - MLT1A1-int LTR MaLR -13 1722 856 2 788 756 226 106 26 chr3 26706265 26706529 -132893254 - MLT1A1-int LTR MaLR -1448 287 3 2 788 265 356 10 0 chr3 26706534 26706635 -132893148 - MLT1A1 LTR MaLR -3 362 261 2 788 1171 44 15 0 chr3 26706649 26706786 -132892997 + B1_Mm SINE Alu 1 139 -8 2 788 234 62 0 0 chr3 26706786 26706818 -132892965 + (TAAAA)n Simple_repeat Simple_repeat 2 33 0 2 788 509 277 96 6 chr3 26706911 26707067 -132892716 - MLT1A1 LTR MaLR -238 170 1 2 788 381 186 93 0 chr3 26707069 26707166 -132892617 + L1MC1 LINE L1 1593 1698 -4810 2 788 444 293 103 67 chr3 26707344 26707779 -132892004 + L1MC1 LINE L1 2315 2765 -3556 2 788 315 0 0 0 chr3 26707779 26707814 -132891969 + (A)n Simple_repeat Simple_repeat 1 35 0 2 788 452 270 30 35 chr3 26707818 26707987 -132891796 + L1MC1 LINE L1 2765 2932 -3389 2 788 661 254 166 0 chr3 26707990 26708171 -132891612 - ID_B1 SINE B4 -8 216 6 2 788 2101 268 122 34 chr3 26708177 26708324 -132891459 + L1MC1 LINE L1 2922 3057 -3264 2 788 2231 62 11 32 chr3 26708324 26708608 -132891175 - L1_Mus1 LINE L1 0 6567 6290 2 788 2101 268 122 34 chr3 26708608 26709480 -132890303 + L1MC1 LINE L1 3058 4031 -2290 2 788 318 209 149 0 chr3 26709597 26709664 -132890119 + RSINE1 SINE B4 75 151 -14 2 788 975 165 0 0 chr3 26709671 26709847 -132889936 + (TGGA)n Simple_repeat Simple_repeat 3 178 0 2 788 491 233 8 0 chr3 26709823 26709952 -132889831 + (CAGA)n Simple_repeat Simple_repeat 3 132 0 2 788 378 275 148 14 chr3 26710302 26710512 -132889271 + L1MC1 LINE L1 4039 4276 -2045 2 788 332 233 59 10 chr3 26710669 26710793 -132888990 - L1M2 LINE L1 -785 5515 5353 2 788 1657 280 120 63 chr3 26711023 26712211 -132887572 - L1M2 LINE L1 -803 5340 4085 2 788 742 271 115 97 chr3 26712153 26712438 -132887345 + L1MC1 LINE L1 5022 5344 -977 2 788 729 314 33 76 chr3 26712438 26712741 -132887042 + B4A SINE B4 3 292 0 2 788 742 279 93 70 chr3 26712741 26713152 -132886631 + L1MC1 LINE L1 5345 5737 -771 2 788 1032 288 129 9 chr3 26713279 26713699 -132886084 + L1MC1 LINE L1 6035 6504 -4 2 788 410 326 94 27 chr3 26714056 26714280 -132885503 + B4A SINE B4 46 284 -8 2 788 252 241 207 88 chr3 26714370 26714675 -132885108 + L1MC4a LINE L1 7542 7882 0 2 788 4125 224 21 22 chr3 26715455 26716325 -132883458 - Lx7 LINE L1 -663 7033 6165 2 788 378 0 0 0 chr3 26716737 26716779 -132883004 + (TG)n Simple_repeat Simple_repeat 1 42 0 2 788 288 0 0 0 chr3 26716957 26716989 -132882794 + (CA)n Simple_repeat Simple_repeat 1 32 0 3 788 408 20 0 0 chr3 26717756 26717805 -132881978 + (CA)n Simple_repeat Simple_repeat 1 49 0 3 788 3402 64 0 17 chr3 26719039 26719453 -132880330 + MTB_Mm LTR MaLR 1 407 0 3 788 6253 136 96 25 chr3 26719456 26720626 -132879157 + MTB_Mm-int LTR MaLR 6 1258 0 3 788 3212 72 15 17 chr3 26720626 26721034 -132878749 + MTB_Mm LTR MaLR 1 407 0 3 788 449 104 13 0 chr3 26721751 26721828 -132877955 + (TC)n Simple_repeat Simple_repeat 1 78 0 3 788 226 288 17 103 chr3 26722185 26722301 -132877482 - L2c LINE L2 -8 3379 3274 3 788 194 196 19 19 chr3 26723030 26723082 -132876701 + L2b LINE L2 3322 3373 -2 3 788 893 132 20 0 chr3 26723442 26723583 -132876200 - URR1A DNA MER1_type 0 226 83 3 788 3597 162 96 4 chr3 26723583 26724314 -132875469 + RMER13B LTR ERVK 1 798 -110 3 788 432 214 24 0 chr3 26724351 26724435 -132875348 - URR1A DNA MER1_type -140 86 1 3 788 244 273 8 8 chr3 26724636 26724758 -132875025 + GA-rich Low_complexity Low_complexity 2 123 0 3 788 332 302 0 0 chr3 26725099 26725185 -132874598 - MIR SINE MIR -142 120 35 3 788 187 248 158 0 chr3 26727793 26727894 -132871889 + L2c LINE L2 3221 3337 -50 3 788 722 255 36 20 chr3 26728768 26728964 -132870819 + MTEb LTR MaLR 5 203 -176 3 788 279 250 69 52 chr3 26729000 26729173 -132870610 + (CACTC)n Simple_repeat Simple_repeat 1 176 0 3 788 248 267 0 102 chr3 26729187 26729383 -132870400 + (CACTC)n Simple_repeat Simple_repeat 1 176 0 3 788 484 291 5 18 chr3 26729460 26729619 -132870164 + MTEb LTR MaLR 243 405 -14 3 788 593 186 0 0 chr3 26729754 26729867 -132869916 + B1_Mur4 SINE Alu 6 118 -32 3 788 405 0 0 0 chr3 26729867 26729912 -132869871 + (CA)n Simple_repeat Simple_repeat 2 46 0 3 788 212 0 36 0 chr3 26729922 26729950 -132869833 + (CAA)n Simple_repeat Simple_repeat 2 30 0 3 788 280 303 0 13 chr3 26730859 26730936 -132868847 + RSINE1 SINE B4 90 165 0 3 788 354 245 36 9 chr3 26731849 26731960 -132867823 + ID_B1 SINE B4 100 213 -11 3 788 23 0 0 0 chr3 26732010 26732033 -132867750 + AT_rich Low_complexity Low_complexity 1 23 0 3 788 309 333 72 0 chr3 26732110 26732305 -132867478 + MER3 DNA MER1_type 1 209 0 3 788 450 173 0 0 chr3 26732597 26732701 -132867082 + (TG)n Simple_repeat Simple_repeat 2 105 0 3 788 297 278 62 44 chr3 26733336 26733449 -132866334 + L3b LINE CR1 338 452 -30 3 788 322 269 18 53 chr3 26734657 26734771 -132865012 + RSINE1 SINE B4 1 110 -55 3 788 637 241 69 23 chr3 26734997 26735171 -132864612 + B3A SINE B2 1 182 -16 3 788 1287 295 65 50 chr3 26735504 26736170 -132863613 + L1MA6 LINE L1 5609 6284 -16 3 788 477 312 58 53 chr3 26736195 26736554 -132863229 - L2 LINE L2 -920 2499 2139 3 788 21 0 0 0 chr3 26737315 26737336 -132862447 + AT_rich Low_complexity Low_complexity 1 21 0 3 788 225 94 0 0 chr3 26738119 26738151 -132861632 + (TG)n Simple_repeat Simple_repeat 1 32 0 3 788 315 0 0 0 chr3 26738151 26738185 -132861598 + (GA)n Simple_repeat Simple_repeat 1 35 0 3 788 560 280 97 53 chr3 26738245 26738471 -132861312 - B4A SINE B4 -56 236 1 3 789 192 158 0 0 chr3 26740311 26740349 -132859434 + A-rich Low_complexity Low_complexity 1 38 0 3 789 393 116 0 0 chr3 26740437 26740506 -132859277 + (TATAA)n Simple_repeat Simple_repeat 4 72 0 3 789 375 284 18 0 chr3 26741382 26741491 -132858292 + PB1D10 SINE Alu 1 111 -6 3 789 623 278 89 21 chr3 26741711 26741946 -132857837 + Tigger5 DNA MER2_type 2156 2406 0 3 789 657 264 0 14 chr3 26742484 26742626 -132857157 - B3A SINE B2 -24 174 35 3 789 815 0 0 10 chr3 26742626 26742722 -132857061 + (TTTTG)n Simple_repeat Simple_repeat 2 96 0 3 789 225 0 0 0 chr3 26743203 26743228 -132856555 + (CAGA)n Simple_repeat Simple_repeat 2 26 0 3 789 1488 290 170 35 chr3 26743356 26744337 -132855446 - Charlie24 DNA MER1_type -389 2061 948 3 789 308 214 86 0 chr3 26744824 26744894 -132854889 + Tigger7 DNA MER2_type 7 82 -2409 3 789 583 256 0 0 chr3 26744896 26745029 -132854754 + B1_Mur1 SINE Alu 2 134 -15 3 789 223 333 0 0 chr3 26745039 26745093 -132854690 + G-rich Low_complexity Low_complexity 1 54 0 3 789 458 310 13 19 chr3 26745376 26745534 -132854249 + Tigger7 DNA MER2_type 2329 2485 -6 3 789 349 255 29 10 chr3 26745794 26745897 -132853886 + L1MA5 LINE L1 6192 6296 -4 3 789 836 284 54 71 chr3 26747727 26747899 -132851884 - MTE2a LTR MaLR -15 364 192 3 789 306 73 0 0 chr3 26747899 26747940 -132851843 + (CTTG)n Simple_repeat Simple_repeat 2 42 0 3 789 836 284 54 71 chr3 26747940 26748135 -132851648 - MTE2a LTR MaLR -188 191 3 3 789 5042 81 81 3 chr3 26748217 26749072 -132850711 - L1_Mus2 LINE L1 -495 6087 5161 3 789 547 123 0 0 chr3 26749074 26749155 -132850628 + L1_Mur2 LINE L1 5054 5134 -743 3 789 311 0 0 25 chr3 26750800 26750840 -132848943 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 3 789 201 229 33 0 chr3 26751628 26751689 -132848094 + (TA)n Simple_repeat Simple_repeat 1 63 0 3 789 22 35 0 0 chr3 26752780 26752809 -132846974 + AT_rich Low_complexity Low_complexity 1 29 0 3 789 353 333 10 0 chr3 26753483 26753585 -132846198 + B1F SINE Alu 1 103 -46 3 789 626 204 13 72 chr3 26753588 26753741 -132846042 + B1_Mur2 SINE Alu 6 149 0 3 789 1150 88 0 0 chr3 26753919 26754066 -132845717 - B1_Mm SINE Alu 0 147 1 3 789 2993 67 20 10 chr3 26754136 26754530 -132845253 + L1_Mus2 LINE L1 6169 6566 0 3 789 21 0 0 0 chr3 26755008 26755029 -132844754 + AT_rich Low_complexity Low_complexity 1 21 0 3 789 193 250 18 0 chr3 26755158 26755214 -132844569 + MIRb SINE MIR 154 210 -58 3 789 560 53 13 0 chr3 26755463 26755539 -132844244 + (TC)n Simple_repeat Simple_repeat 2 78 0 3 789 231 288 0 33 chr3 26755544 26755605 -132844178 - tRNA-Ala-GCY_ tRNA tRNA -11 64 6 3 789 246 289 92 42 chr3 26755632 26755751 -132844032 - PB1 SINE Alu -2 125 1 3 789 25 51 0 0 chr3 26755928 26755967 -132843816 + AT_rich Low_complexity Low_complexity 1 39 0 3 789 420 251 106 12 chr3 26756954 26757115 -132842668 - Lx8 LINE L1 0 7473 7298 3 789 38771 15 3 7 chr3 26757115 26762675 -132837108 + L1Md_A LINE L1 53 5586 -297 3 789 8901 18 0 0 chr3 26762675 26763671 -132836112 + L1Md_A LINE L1 5587 6582 0 3 789 3347 262 105 17 chr3 26763674 26763760 -132836023 - Lx8 LINE L1 -166 7307 7214 3 789 1055 67 7 0 chr3 26763760 26763909 -132835874 + (TC)n Simple_repeat Simple_repeat 2 151 0 3 789 3347 262 105 17 chr3 26763909 26764866 -132834917 - Lx8 LINE L1 -260 7213 6173 3 789 342 115 0 0 chr3 26764888 26764940 -132834843 + (TG)n Simple_repeat Simple_repeat 1 52 0 3 789 438 20 0 0 chr3 26764940 26764990 -132834793 + (GA)n Simple_repeat Simple_repeat 1 51 0 3 789 434 250 0 0 chr3 26765212 26765304 -132834479 + L1MA4 LINE L1 5568 5659 -632 3 789 2915 160 199 47 chr3 26765305 26766077 -132833706 + RMER19B LTR ERVK 1 890 -12 3 789 453 76 12 188 chr3 26766084 26766198 -132833585 + L1Md_F3 LINE L1 6503 6584 0 3 789 715 267 0 16 chr3 26766204 26766409 -132833374 + L1MA4 LINE L1 5606 5839 -461 3 789 1040 253 113 35 chr3 26766405 26766863 -132832920 + L1M2 LINE L1 3383 3876 -2267 3 789 442 198 32 42 chr3 26766864 26766959 -132832824 + L1M2 LINE L1 5531 5624 -544 3 789 8592 112 5 4 chr3 26766954 26768258 -132831525 + L1VL4 LINE L1 29 1330 -2229 3 789 239 0 0 31 chr3 26768258 26768290 -132831493 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 3 789 8592 86 14 4 chr3 26768290 26769039 -132830744 + L1VL4 LINE L1 1331 2089 -1470 3 789 7214 103 26 11 chr3 26769038 26770340 -132829443 + L1_Mus4 LINE L1 5314 6635 -1 3 789 377 264 96 37 chr3 26770809 26771048 -132828735 + L1MA4A LINE L1 5782 6027 -273 3 789 249 327 0 67 chr3 26771312 26771417 -132828366 + RSINE1 SINE B4 35 132 -33 3 789 1507 267 227 21 chr3 26771545 26772387 -132827396 + L1M2 LINE L1 3895 4909 -1234 3 789 468 295 64 40 chr3 26772388 26772561 -132827222 - Lx9 LINE L1 -809 6835 6659 3 789 523 294 75 60 chr3 26772699 26772898 -132826885 + Lx9 LINE L1 6373 6574 -1070 3 789 726 192 0 0 chr3 26773239 26773385 -132826398 + CT-rich Low_complexity Low_complexity 1 146 0 3 789 449 282 0 17 chr3 26773389 26773508 -132826275 - PB1D10 SINE Alu 0 117 1 3 789 430 284 69 29 chr3 26774074 26774248 -132825535 + MLT1B LTR MaLR 5 185 -205 3 789 577 295 28 24 chr3 26774338 26774550 -132825233 + MLT1B LTR MaLR 165 377 -13 3 789 1576 286 174 23 chr3 26775098 26776328 -132823455 + Lx8 LINE L1 4486 5902 -1571 3 789 516 313 30 85 chr3 26778081 26778409 -132821374 - ORR1E LTR MaLR -49 310 1 3 789 289 266 17 92 chr3 26780427 26780547 -132819236 - PB1D9 SINE Alu -9 111 1 3 789 667 189 18 36 chr3 26780639 26780804 -132818979 - RLTR11B LTR ERVK -15 438 277 3 789 6935 102 45 5 chr3 26781064 26781566 -132818217 - L1_Mus4 LINE L1 0 6636 6115 3 789 939 9 0 0 chr3 26781566 26781674 -132818109 + (TATATG)n Simple_repeat Simple_repeat 2 109 0 3 789 10715 141 227 19 chr3 26781674 26783796 -132815987 - L1_Mus4 LINE L1 -522 6114 3707 3 789 3388 38 2 10 chr3 26783796 26784195 -132815588 - MTA_Mm LTR MaLR 0 396 1 3 789 10715 153 284 23 chr3 26784195 26784822 -132814961 - L1_Mus4 LINE L1 -2177 3706 2681 3 789 3502 49 0 0 chr3 26784823 26785273 -132814510 - L1VL4 LINE L1 -2079 1480 1031 3 789 7647 26 11 0 chr3 26785303 26786183 -132813600 - L1Md_A LINE L1 0 6582 5693 3 789 3365 115 50 20 chr3 26786149 26786836 -132812947 - L1VL4 LINE L1 -2509 1050 335 3 789 544 231 0 53 chr3 26786836 26786987 -132812796 - RLTR11B LTR ERVK -305 148 6 3 789 314 177 24 60 chr3 26787140 26787224 -132812559 - HAL1-3A_ME LINE L1 -803 2055 1975 3 789 270 0 0 0 chr3 26787224 26787254 -132812529 + (TA)n Simple_repeat Simple_repeat 1 30 0 3 789 262 240 196 53 chr3 26787313 26787483 -132812300 - B4 SINE B4 -3 289 96 3 789 192 40 0 0 chr3 26787670 26787695 -132812088 + (GA)n Simple_repeat Simple_repeat 1 25 0 3 789 205 79 25 50 chr3 26788314 26788354 -132811429 + (TTTG)n Simple_repeat Simple_repeat 1 39 0 3 789 834 129 0 93 chr3 26788355 26788517 -132811266 - B1_Mur3 SINE Alu -2 147 1 3 789 21 57 0 0 chr3 26789274 26789309 -132810474 + AT_rich Low_complexity Low_complexity 1 35 0 3 789 402 21 0 0 chr3 26789826 26789873 -132809910 + (GGGTG)n Simple_repeat Simple_repeat 3 49 0 3 789 1960 242 71 43 chr3 26790211 26790763 -132809020 - RMER15 LTR ERVL -2 573 7 3 789 403 226 36 12 chr3 26791103 26791269 -132808514 + (TG)n Simple_repeat Simple_repeat 2 171 0 3 789 375 41 0 0 chr3 26791325 26791374 -132808409 + (TG)n Simple_repeat Simple_repeat 2 50 0 3 789 534 279 131 9 chr3 26791394 26791615 -132808168 - B4 SINE B4 -43 249 2 3 789 183 129 0 0 chr3 26791655 26791686 -132808097 + (CAGA)n Simple_repeat Simple_repeat 4 34 0 3 789 189 0 0 0 chr3 26791801 26791822 -132807961 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 4 789 992 90 8 0 chr3 26791865 26791999 -132807784 + B1_Mus2 SINE Alu 1 135 -12 4 789 957 83 0 0 chr3 26791999 26792131 -132807652 + (GAAA)n Simple_repeat Simple_repeat 1 132 0 4 789 2811 230 130 101 chr3 26792138 26792952 -132806831 + RMER1B Other Other 106 951 -115 4 789 342 0 0 0 chr3 26792952 26792990 -132806793 + (TG)n Simple_repeat Simple_repeat 1 38 0 4 789 2811 230 130 101 chr3 26792990 26793105 -132806678 + RMER1B Other Other 952 1062 -4 4 789 700 172 60 0 chr3 26793123 26793257 -132806526 + B1_Mus1 SINE Alu 6 147 -1 4 789 269 260 20 50 chr3 26793747 26793848 -132805935 + MLT1A1 LTR MaLR 311 408 0 4 789 229 305 61 0 chr3 26793921 26794003 -132805780 - L1M5 LINE L1 -240 5933 5847 4 789 674 240 25 83 chr3 26794736 26794947 -132804836 + B3 SINE B2 1 190 -5 4 789 645 311 124 62 chr3 26795108 26795740 -132804043 - L1MB3 LINE L1 0 6300 5629 4 789 327 286 10 0 chr3 26796382 26796480 -132803303 + PB1D9 SINE Alu 22 120 0 4 789 513 92 0 0 chr3 26796506 26796582 -132803201 + (TG)n Simple_repeat Simple_repeat 1 76 0 4 789 496 217 60 9 chr3 26796593 26796709 -132803074 - B3A SINE B2 -60 138 17 4 789 821 0 37 0 chr3 26796800 26796909 -132802874 + (GGGA)n Simple_repeat Simple_repeat 2 114 0 4 789 286 311 11 0 chr3 26797490 26797580 -132802203 - PB1D10 SINE Alu -12 105 15 4 789 216 0 0 0 chr3 26798214 26798238 -132801545 + (TG)n Simple_repeat Simple_repeat 1 24 0 4 789 522 0 0 0 chr3 26798238 26798295 -132801488 + (GA)n Simple_repeat Simple_repeat 1 58 0 4 789 675 282 56 103 chr3 26798633 26798973 -132800810 + ORR1E LTR MaLR 36 359 0 4 789 41339 15 1 7 chr3 26799177 26805376 -132794407 - L1Md_A LINE L1 -1 6581 422 4 789 220 180 0 20 chr3 26806181 26806198 -132793585 + A-rich Low_complexity Low_complexity 4 20 0 4 789 1145 62 21 0 chr3 26806198 26806342 -132793441 + B1_Mm SINE Alu 1 147 0 4 789 249 91 0 0 chr3 26806342 26806375 -132793408 + (A)n Simple_repeat Simple_repeat 1 33 0 4 789 978 128 6 22 chr3 26806375 26806558 -132793225 + GA-rich Low_complexity Low_complexity 1 180 0 4 789 1597 239 61 8 chr3 26806959 26807355 -132792428 - MTD LTR MaLR -2 417 1 4 789 1128 207 117 34 chr3 26807355 26807694 -132792089 - MTE2a LTR MaLR -8 371 1 4 789 806 307 34 19 chr3 26808870 26809053 -132790730 - B4A SINE B4 -19 273 85 4 789 381 86 0 0 chr3 26809053 26809111 -132790672 + (TTCA)n Simple_repeat Simple_repeat 3 60 0 4 789 806 307 34 19 chr3 26809111 26809196 -132790587 - B4A SINE B4 -208 84 2 4 789 272 320 30 0 chr3 26809607 26809707 -132790076 + PB1D10 SINE Alu 1 103 -14 4 789 924 246 157 25 chr3 26810801 26811164 -132788619 - L1_Rod LINE L1 -84 5763 5353 4 789 371 308 90 52 chr3 26811175 26811388 -132788395 - L1M2 LINE L1 -886 5257 5026 4 789 528 16 0 0 chr3 26811388 26811449 -132788334 + (TC)n Simple_repeat Simple_repeat 2 62 0 4 789 633 180 90 0 chr3 26811458 26811580 -132788203 - B1_Mus1 SINE Alu -13 135 3 4 789 371 308 90 52 chr3 26811580 26811699 -132788084 - L1M2 LINE L1 -1118 5025 4902 4 789 372 331 88 35 chr3 26812546 26812793 -132786990 + B4A SINE B4 11 271 -21 4 789 297 0 0 0 chr3 26812793 26812826 -132786957 + (TG)n Simple_repeat Simple_repeat 1 33 0 4 789 372 331 88 35 chr3 26812826 26812838 -132786945 + B4A SINE B4 272 283 -9 4 789 227 114 0 22 chr3 26813833 26813878 -132785905 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 4 789 1259 236 86 30 chr3 26814847 26815288 -132784495 - RLTR11A LTR ERVK -39 489 24 4 789 339 327 46 51 chr3 26815296 26815512 -132784271 - MLT1A LTR MaLR -22 352 138 4 789 646 204 78 0 chr3 26815537 26815679 -132784104 - MTD LTR MaLR -14 405 253 4 789 269 149 43 0 chr3 26815720 26815767 -132784016 + (TCTCTG)n Simple_repeat Simple_repeat 6 54 0 4 789 528 93 0 0 chr3 26815769 26815844 -132783939 + (TC)n Simple_repeat Simple_repeat 1 75 0 4 789 513 301 50 20 chr3 26815844 26816044 -132783739 - MTD LTR MaLR -213 206 1 4 789 342 307 8 16 chr3 26816044 26816172 -132783611 - MLT1A LTR MaLR -244 130 4 4 789 198 143 0 0 chr3 26816237 26816272 -132783511 + (CA)n Simple_repeat Simple_repeat 2 36 0 4 789 283 23 45 0 chr3 26816647 26816691 -132783092 + (TA)n Simple_repeat Simple_repeat 1 46 0 4 789 2946 52 52 0 chr3 26816691 26817060 -132782723 + RLTR10 LTR ERVK 2 389 -1 4 789 582 15 0 0 chr3 26817060 26817127 -132782656 + (TA)n Simple_repeat Simple_repeat 2 68 0 4 789 563 40 14 0 chr3 26818053 26818127 -132781656 + (TAGA)n Simple_repeat Simple_repeat 1 75 0 4 789 3646 145 9 59 chr3 26821462 26822123 -132777660 - RLTR5_Mm LTR ERV1 0 628 1 4 789 2983 121 32 26 chr3 26822182 26822265 -132777518 - RLTR20A LTR ERVK -3 538 448 4 789 492 86 0 0 chr3 26822265 26822335 -132777448 + (CA)n Simple_repeat Simple_repeat 2 71 0 4 789 2983 121 32 26 chr3 26822335 26822784 -132776999 - RLTR20A LTR ERVK -94 447 5 4 789 428 246 90 33 chr3 26822842 26822964 -132776819 + B1_Mur1 SINE Alu 1 129 -20 4 789 533 55 14 0 chr3 26822969 26823042 -132776741 + (TAGA)n Simple_repeat Simple_repeat 4 77 0 4 789 251 228 32 16 chr3 26823566 26823691 -132776092 + (TA)n Simple_repeat Simple_repeat 2 128 0 4 789 1055 48 7 20 chr3 26824703 26824851 -132774932 + L1_Mus1 LINE L1 6422 6567 0 4 789 239 280 27 0 chr3 26825064 26825139 -132774644 + (TAGA)n Simple_repeat Simple_repeat 2 78 0 4 789 315 272 105 0 chr3 26825503 26825617 -132774166 - ID_B1 SINE B4 -12 212 87 4 789 446 173 15 15 chr3 26826616 26826751 -132773032 + (TA)n Simple_repeat Simple_repeat 2 136 0 4 789 461 148 109 43 chr3 26826812 26826904 -132772879 - B1_Mm SINE Alu -32 115 18 4 789 396 317 68 51 chr3 26827693 26827869 -132771914 + B4A SINE B4 1 179 -113 4 789 258 32 0 0 chr3 26827915 26827946 -132771837 + (CA)n Simple_repeat Simple_repeat 2 32 0 4 789 189 0 0 0 chr3 26827946 26827966 -132771817 + (GA)n Simple_repeat Simple_repeat 2 22 0 4 789 1257 224 101 21 chr3 26827981 26828318 -132771465 - ORR1D1 LTR MaLR -10 364 1 4 789 1055 216 132 14 chr3 26828318 26828482 -132771301 - ORR1D1 LTR MaLR -49 325 126 4 789 1049 215 324 59 chr3 26828482 26828913 -132770870 + MT2B LTR ERVL 1 543 -58 4 789 711 65 0 0 chr3 26828913 26829006 -132770777 + (TAGA)n Simple_repeat Simple_repeat 1 93 0 4 789 1049 215 324 59 chr3 26829006 26829049 -132770734 + MT2B LTR ERVL 544 600 -1 4 789 1055 216 132 14 chr3 26829049 26829171 -132770612 - ORR1D1 LTR MaLR -249 125 4 4 789 572 265 15 8 chr3 26829381 26829514 -132770269 + RSINE1 SINE B4 20 153 -12 4 789 341 261 152 9 chr3 26830171 26830283 -132769500 - LTR50 LTR ERVL -635 160 33 4 789 1161 88 0 0 chr3 26830283 26830431 -132769352 + B1_Mus1 SINE Alu 1 148 0 4 789 300 289 94 75 chr3 26831268 26831481 -132768302 - MLT1G1 LTR MaLR -5 574 358 4 789 21 0 0 0 chr3 26832152 26832173 -132767610 + AT_rich Low_complexity Low_complexity 1 21 0 4 789 919 211 92 15 chr3 26833250 26833484 -132766299 - ORR1D1 LTR MaLR 0 374 125 4 789 360 0 0 0 chr3 26833484 26833524 -132766259 + (CA)n Simple_repeat Simple_repeat 2 41 0 4 789 919 211 92 15 chr3 26833524 26833549 -132766234 - ORR1D1 LTR MaLR -250 124 96 4 789 898 287 103 7 chr3 26833657 26833959 -132765824 - MTEa LTR MaLR -46 333 3 4 789 271 275 0 42 chr3 26834008 26834080 -132765703 + MIR3 SINE MIR 94 162 -46 4 789 190 298 0 21 chr3 26834223 26834271 -132765512 - MIR SINE MIR -109 99 53 4 789 485 240 63 76 chr3 26834535 26834693 -132765090 + B4A SINE B4 1 156 -136 4 789 438 20 0 0 chr3 26835102 26835153 -132764630 + (TG)n Simple_repeat Simple_repeat 2 52 0 4 789 266 254 267 30 chr3 26835156 26835287 -132764496 - B3 SINE B2 -53 163 2 4 789 273 338 65 44 chr3 26836850 26837079 -132762704 - ORR1E LTR MaLR -117 242 9 4 789 9169 127 12 6 chr3 26838302 26840764 -132759019 - Lx2B LINE L1 0 7000 4485 4 789 454 299 50 63 chr3 26840768 26840989 -132758794 - RMER12 LTR ERVK -4 1318 1101 4 789 4834 114 10 8 chr3 26841188 26841989 -132757794 - RLTR22_Mur LTR ERVK -1045 803 1 4 789 2187 139 9 0 chr3 26841989 26842333 -132757450 - L1_Mur2 LINE L1 -1396 4481 4135 4 789 6826 89 10 7 chr3 26842338 26843349 -132756434 + MusHAL1 LINE L1 61 1074 -1638 4 789 37249 34 3 7 chr3 26843418 26848857 -132750926 + L1Md_T LINE L1 171 5586 -297 4 789 8456 34 6 2 chr3 26848857 26849849 -132749934 + L1Md_T LINE L1 5587 6582 0 4 789 1123 58 7 0 chr3 26849860 26849999 -132749784 + L1Md_T LINE L1 5447 5586 -297 4 789 8438 36 6 0 chr3 26849999 26850989 -132748794 + L1Md_T LINE L1 5587 6582 0 4 789 15748 139 15 19 chr3 26851036 26854480 -132745303 + Lx LINE L1 3141 6566 -88 4 789 3111 40 0 0 chr3 26854497 26854868 -132744915 + L1Md_T LINE L1 6212 6582 0 4 789 1054 236 163 23 chr3 26854879 26855400 -132744383 + L1MDa LINE L1 1820 2413 -4220 4 789 806 281 125 77 chr3 26855573 26856012 -132743771 + MT2A LTR ERVL 67 526 -7 4 789 349 237 25 22 chr3 26856018 26856146 -132743637 + L1MDa LINE L1 2510 2634 -3903 4 789 487 268 73 0 chr3 26856294 26856417 -132743366 + B1F2 SINE Alu 18 149 0 4 789 30 27 0 0 chr3 26856417 26856454 -132743329 + AT_rich Low_complexity Low_complexity 1 37 0 4 789 1165 192 94 34 chr3 26856499 26856796 -132742987 - RLTR46 LTR ERVK -5 315 1 4 789 488 264 50 42 chr3 26856806 26857047 -132742736 + L1MDa LINE L1 2831 3073 -3464 4 789 1890 148 40 11 chr3 26857051 26857400 -132742383 - ORR1B2 LTR MaLR -8 359 1 4 789 1059 253 137 17 chr3 26857406 26857889 -132741894 + L1MDa LINE L1 3075 3615 -2922 4 789 216 86 0 0 chr3 26858041 26858076 -132741707 + (T)n Simple_repeat Simple_repeat 1 35 0 4 789 609 72 0 0 chr3 26858200 26858283 -132741500 + (GA)n Simple_repeat Simple_repeat 1 83 0 4 789 312 91 0 0 chr3 26858395 26858439 -132741344 + (CCCCG)n Simple_repeat Simple_repeat 1 44 0 4 789 575 322 157 29 chr3 26858588 26859167 -132740616 + L1MDa LINE L1 3632 4284 -2253 4 789 267 330 101 48 chr3 26859186 26859374 -132740409 + B4A SINE B4 7 204 -88 4 789 251 260 173 11 chr3 26859483 26859662 -132740121 + L1M4 LINE L1 4272 4479 -1667 4 789 516 252 44 44 chr3 26859832 26859966 -132739817 + B3A SINE B2 33 166 -32 4 789 324 0 0 0 chr3 26859966 26860002 -132739781 + (CA)n Simple_repeat Simple_repeat 1 36 0 4 789 516 252 44 44 chr3 26860002 26860025 -132739758 + B3A SINE B2 167 189 -9 4 789 318 268 166 47 chr3 26860356 26860700 -132739083 + L1MDa LINE L1 5247 5631 -906 4 789 5662 173 104 42 chr3 26860699 26862717 -132737066 + Lx4B LINE L1 4886 6973 0 4 789 3083 184 11 19 chr3 26862740 26863312 -132736471 + Lx4B LINE L1 6487 7053 -5 5 789 27 49 0 0 chr3 26863404 26863445 -132736338 + AT_rich Low_complexity Low_complexity 1 41 0 5 789 225 0 0 0 chr3 26863512 26863537 -132736246 + (CA)n Simple_repeat Simple_repeat 2 26 0 5 789 492 234 28 0 chr3 26863537 26863644 -132736139 + PB1D10 SINE Alu 1 110 -7 5 789 351 316 90 25 chr3 26863704 26863905 -132735878 + L1MDa LINE L1 5786 5999 -554 4 789 557 264 75 0 chr3 26864023 26864182 -132735601 + L1MDa LINE L1 5986 6156 -477 4 789 429 280 72 0 chr3 26864512 26864637 -132735146 + B1F2 SINE Alu 13 146 -3 5 789 437 373 72 0 chr3 26864804 26864882 -132734901 - MLT1A0 LTR MaLR -87 278 192 5 789 702 120 0 0 chr3 26864882 26865007 -132734776 + (TG)n Simple_repeat Simple_repeat 1 125 0 5 789 437 373 72 0 chr3 26865007 26865121 -132734662 - MLT1A0 LTR MaLR -174 191 73 5 789 684 274 6 0 chr3 26865139 26865296 -132734487 - B3A SINE B2 -32 166 9 5 789 610 200 115 88 chr3 26866170 26866362 -132733421 - B3A SINE B2 0 198 2 5 789 623 318 62 19 chr3 26866551 26866859 -132732924 - MLT1C LTR MaLR -3 464 144 5 789 589 209 111 71 chr3 26866862 26867030 -132732753 - RMER17C LTR ERVK 0 410 222 5 789 323 57 0 36 chr3 26867030 26867085 -132732698 + (CAGAGA)n Simple_repeat Simple_repeat 2 54 0 5 789 589 209 111 71 chr3 26867085 26867142 -132732641 - RMER17C LTR ERVK -189 221 176 5 789 6153 145 60 61 chr3 26867157 26867378 -132732405 - RMER17C-int LTR ERVK -437 2801 2589 5 789 250 222 0 0 chr3 26867378 26867423 -132732360 + LSU-rRNA_Hsa rRNA rRNA 4202 4246 -789 5 789 6153 145 60 61 chr3 26867423 26868651 -132731132 - RMER17C-int LTR ERVK -437 2588 1400 5 789 2234 196 28 28 chr3 26868656 26869308 -132730475 - RLTR31_Mur LTR ERVK 0 553 1 5 789 454 201 85 128 chr3 26869314 26869679 -132730104 - RMER17C-int LTR ERVK -1838 1400 1100 5 790 198 0 0 0 chr3 26869860 26869882 -132729901 + (CAGG)n Simple_repeat Simple_repeat 3 24 0 5 790 2074 201 83 134 chr3 26869925 26870107 -132729676 - RMER17C-int LTR ERVK -2496 742 595 5 790 342 0 0 0 chr3 26870107 26870145 -132729638 + (TTGG)n Simple_repeat Simple_repeat 2 39 0 5 790 2074 201 83 134 chr3 26870145 26870743 -132729040 - RMER17C-int LTR ERVK -2644 594 2 5 790 1205 172 21 176 chr3 26870765 26871196 -132728587 - RMER17C LTR ERVK -46 364 1 5 790 774 275 39 21 chr3 26871215 26871449 -132728334 + Lx8 LINE L1 6903 7140 -333 5 790 2005 162 18 24 chr3 26871490 26871848 -132727935 - ORR1C1 LTR MaLR 0 378 22 5 790 2491 38 28 9 chr3 26871848 26872168 -132727615 - L1Md_F3 LINE L1 -2 6582 6257 5 790 2005 162 18 24 chr3 26872168 26872189 -132727594 - ORR1C1 LTR MaLR -357 21 1 5 790 250 222 27 14 chr3 26872198 26872248 -132727535 + polypurine Low_complexity Low_complexity 2 53 0 5 790 1242 78 0 0 chr3 26872248 26872428 -132727355 + (GGGAGA)n Simple_repeat Simple_repeat 1 180 0 5 790 250 222 27 14 chr3 26872428 26872450 -132727333 + polypurine Low_complexity Low_complexity 54 75 0 5 790 327 161 102 80 chr3 26872673 26872761 -132727022 + ID_B1 SINE B4 8 97 -127 5 790 401 0 20 0 chr3 26872799 26872848 -132726935 + (TG)n Simple_repeat Simple_repeat 2 51 0 5 790 478 209 16 0 chr3 26872850 26872979 -132726804 + (TA)n Simple_repeat Simple_repeat 1 131 0 5 790 198 0 0 0 chr3 26873014 26873036 -132726747 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 5 790 12111 15 0 0 chr3 26873188 26874545 -132725238 + L1Md_T LINE L1 4230 5586 -297 5 790 8609 33 0 0 chr3 26874545 26875541 -132724242 + L1Md_T LINE L1 5587 6582 0 5 790 5833 84 85 5 chr3 26876400 26877918 -132721865 - L1VL2 LINE L1 -1796 1819 179 5 790 212 311 9 46 chr3 26878559 26878667 -132721116 - MIR3 SINE MIR -11 197 94 5 790 809 250 39 0 chr3 26879072 26879280 -132720503 + B3 SINE B2 1 216 0 5 790 186 43 0 0 chr3 26879727 26879750 -132720033 + (TTTTC)n Simple_repeat Simple_repeat 3 25 0 5 790 302 314 9 29 chr3 26879768 26879873 -132719910 - PB1D10 SINE Alu 0 117 15 5 790 243 57 75 0 chr3 26880953 26881006 -132718777 + (TTTG)n Simple_repeat Simple_repeat 2 58 0 5 790 767 270 95 31 chr3 26881453 26881778 -132718005 - ORR1E LTR MaLR -5 354 9 5 790 2307 181 17 33 chr3 26883049 26883570 -132716213 - RLTR28 LTR ERVL -11 513 1 5 790 233 306 53 40 chr3 26883702 26883777 -132716006 + B4A SINE B4 217 292 0 5 790 202 200 0 0 chr3 26883780 26883815 -132715968 + (CA)n Simple_repeat Simple_repeat 2 36 0 5 790 238 357 0 0 chr3 26884169 26884239 -132715544 + RMER10B LTR ERVL 272 341 -57 5 790 1559 181 165 27 chr3 26884510 26884880 -132714903 + MTC LTR MaLR 1 421 0 5 790 2246 88 82 0 chr3 26885068 26885398 -132714385 + IAPEY2_LTR LTR ERVK 1 357 0 5 790 812 223 3 0 chr3 26885452 26885642 -132714141 - B3 SINE B2 0 198 6 5 790 351 0 0 0 chr3 26885647 26885686 -132714097 + (TG)n Simple_repeat Simple_repeat 2 40 0 5 790 33 0 0 0 chr3 26885692 26885725 -132714058 + AT_rich Low_complexity Low_complexity 1 33 0 5 790 1209 54 0 7 chr3 26885728 26885877 -132713906 - B1_Mus1 SINE Alu 0 148 1 5 790 5925 82 32 11 chr3 26885879 26886714 -132713069 - L1_Mus4 LINE L1 -1 6635 5783 5 790 873 29 0 0 chr3 26887226 26887330 -132712453 + (GTTTG)n Simple_repeat Simple_repeat 4 107 0 5 790 527 272 270 9 chr3 26887458 26887777 -132712006 - MTD LTR MaLR 0 419 18 5 790 907 224 23 32 chr3 26889435 26889652 -132710131 - B3 SINE B2 0 216 2 5 790 201 147 0 0 chr3 26890069 26890103 -132709680 + (TCC)n Simple_repeat Simple_repeat 3 36 0 5 790 1265 243 157 100 chr3 26890418 26890896 -132708887 + MT2A LTR ERVL 1 517 -16 5 790 1082 139 107 15 chr3 26890896 26891101 -132708682 + URR1B DNA MER1_type 1 224 -1 5 790 1265 243 157 100 chr3 26891101 26891124 -132708659 + MT2A LTR ERVL 518 531 -2 5 790 578 268 7 7 chr3 26891166 26891305 -132708478 - ID_B1 SINE B4 0 224 86 5 790 298 282 45 78 chr3 26891205 26891359 -132708424 - MT2B LTR ERVL -341 260 112 5 790 299 308 19 83 chr3 26891404 26891560 -132708223 - B1F2 SINE Alu -2 147 2 5 790 540 335 111 33 chr3 26891634 26891967 -132707816 + ORR1E LTR MaLR 1 359 0 5 790 414 287 110 9 chr3 26891972 26892190 -132707593 + Charlie5 DNA MER1_type 2365 2604 -20 5 790 658 244 184 73 chr3 26892344 26892578 -132707205 + B4A SINE B4 33 292 0 5 790 232 239 83 14 chr3 26892534 26892606 -132707177 + B3 SINE B2 130 206 -10 5 790 939 108 1 33 chr3 26892848 26893015 -132706768 - RMER17A2 LTR ERVK -732 157 1 5 790 704 151 17 8 chr3 26893032 26893152 -132706631 + B1_Mur3 SINE Alu 29 149 0 5 790 584 297 238 24 chr3 26893483 26893824 -132705959 + MTD LTR MaLR 6 419 -2 5 790 1352 285 18 34 chr3 26894316 26894701 -132705082 + MTEa LTR MaLR 1 379 0 5 790 507 148 45 0 chr3 26894898 26894986 -132704797 + U1 snRNA snRNA 52 143 -22 5 790 789 218 39 33 chr3 26895050 26895230 -132704553 + B3A SINE B2 1 181 -17 5 790 232 258 15 15 chr3 26895333 26895400 -132704383 + ID4_ SINE ID 9 75 -8 5 790 256 197 97 14 chr3 26895344 26895416 -132704367 + B4A SINE B4 20 97 -195 5 790 1254 41 0 0 chr3 26895465 26895612 -132704171 + B1_Mm SINE Alu 1 147 0 5 790 728 302 62 31 chr3 26895852 26896177 -132703606 - MLT1A0 LTR MaLR -2 363 29 5 790 293 213 32 16 chr3 26898516 26898578 -132701205 - tRNA-Ala-GCY_ tRNA tRNA -7 68 6 5 790 221 268 36 0 chr3 26899642 26899698 -132700085 + GA-rich Low_complexity Low_complexity 2 59 0 5 790 2810 136 60 43 chr3 26899824 26900339 -132699444 + RLTR28 LTR ERVL 1 524 0 5 790 1042 220 66 51 chr3 26900467 26900740 -132699043 + Lx5 LINE L1 6058 6334 -716 5 790 1782 189 104 27 chr3 26900744 26901146 -132698637 + Lx4B LINE L1 6625 7057 -1 5 790 509 316 12 55 chr3 26901187 26901351 -132698432 + RSINE1 SINE B4 9 165 0 5 790 601 342 71 32 chr3 26901439 26901720 -132698063 + B4A SINE B4 1 292 0 5 790 1203 208 45 19 chr3 26901870 26902230 -132697553 + RMER15 LTR ERVL 28 431 -144 5 790 1298 193 206 46 chr3 26902242 26902698 -132697085 - RMER4B LTR ERVK -11 574 46 5 790 198 0 0 0 chr3 26902703 26902725 -132697058 + (TTTG)n Simple_repeat Simple_repeat 4 25 0 5 790 631 226 47 14 chr3 26902738 26902886 -132696897 + RMER15 LTR ERVL 423 575 0 5 790 276 291 167 45 chr3 26903058 26903256 -132696527 - MIRc SINE MIR -33 235 14 5 790 664 259 44 66 chr3 26903358 26903585 -132696198 - ID_B1 SINE B4 -2 222 1 5 790 449 288 45 19 chr3 26904900 26905060 -132694723 + B3A SINE B2 1 186 -12 5 790 384 22 0 0 chr3 26905060 26905105 -132694678 + (TG)n Simple_repeat Simple_repeat 2 46 0 5 790 449 284 28 21 chr3 26905105 26905116 -132694667 + B3A SINE B2 187 196 -2 5 790 664 90 81 8 chr3 26905196 26905319 -132694464 - Lx4A LINE L1 0 7058 6927 5 790 321 26 0 0 chr3 26905737 26905775 -132694008 + (ATTG)n Simple_repeat Simple_repeat 2 39 0 5 790 426 234 57 0 chr3 26905775 26905882 -132693901 - B1_Mur4 SINE Alu -9 141 10 5 790 611 286 15 51 chr3 26905910 26906105 -132693678 - B3A SINE B2 -7 191 4 5 790 2087 96 14 0 chr3 26906135 26906417 -132693366 + ORR1A2 LTR MaLR 1 286 -41 5 790 7625 74 4 1 chr3 26906417 26907758 -132692025 + L1_Mus1 LINE L1 5223 6567 0 5 790 388 43 0 0 chr3 26907772 26907819 -132691964 + ORR1A2 LTR MaLR 272 318 -8 5 790 3443 173 50 136 chr3 26907823 26908767 -132691016 + ORR1A2-int LTR MaLR 1 863 -929 5 790 4899 52 0 2 chr3 26908817 26909418 -132690365 + L1Md_F2 LINE L1 4987 5586 -297 5 790 7813 70 7 2 chr3 26909419 26910409 -132689374 + L1Md_F2 LINE L1 5588 6582 0 5 790 6112 102 34 11 chr3 26910409 26911314 -132688469 + ORR1A2-int LTR MaLR 1038 1963 0 5 790 984 162 0 0 chr3 26911314 26911468 -132688315 + ORR1A2 LTR MaLR 1 154 -173 5 790 602 111 0 0 chr3 26911465 26911555 -132688228 + ORR1A2-int LTR MaLR 1221 1310 -653 5 790 766 156 0 0 chr3 26911563 26911685 -132688098 + ORR1A2 LTR MaLR 164 285 -41 5 790 186 293 51 17 chr3 26912038 26912097 -132687686 - L3 LINE CR1 -2251 2238 2178 5 790 338 244 108 32 chr3 26912574 26912667 -132687116 - B1_Mur2 SINE Alu -46 103 4 5 790 467 123 12 0 chr3 26913255 26913336 -132686447 + (TTTC)n Simple_repeat Simple_repeat 3 84 0 5 790 465 36 0 0 chr3 26913438 26913493 -132686290 + ORR1A3 LTR MaLR 272 326 0 5 790 473 240 107 0 chr3 26914143 26914264 -132685519 - MTE2b LTR MaLR 0 379 246 5 790 2304 105 237 46 chr3 26914264 26914724 -132685059 - RLTR6_Mm LTR ERV1 -70 584 37 5 790 237 228 196 56 chr3 26914726 26914833 -132684950 - RLTR6_Mm LTR ERV1 -532 122 1 5 790 68823 16 15 2 chr3 26914833 26922516 -132677267 - RLTR6-int LTR ERV1 0 7778 1 5 790 2456 104 227 44 chr3 26922516 26922997 -132676786 - RLTR6_Mm LTR ERV1 -49 605 37 5 790 237 228 196 56 chr3 26922999 26923106 -132676677 - RLTR6_Mm LTR ERV1 -532 122 1 5 790 216 238 48 0 chr3 26923117 26923180 -132676603 + (CA)n Simple_repeat Simple_repeat 1 66 0 5 790 635 275 105 36 chr3 26923180 26923399 -132676384 - MTE2b LTR MaLR -145 234 1 5 790 902 268 22 51 chr3 26923562 26923759 -132676024 + MTEb LTR MaLR 1 194 -185 5 790 405 0 0 0 chr3 26923759 26923804 -132675979 + (TC)n Simple_repeat Simple_repeat 2 46 0 6 790 381 43 0 0 chr3 26923804 26923850 -132675933 + (TG)n Simple_repeat Simple_repeat 2 48 0 6 790 902 268 22 51 chr3 26923850 26923926 -132675857 + MTEb LTR MaLR 195 266 -113 5 790 344 187 20 20 chr3 26923939 26924092 -132675691 + (TCTCTG)n Simple_repeat Simple_repeat 4 156 0 6 790 448 209 50 81 chr3 26924108 26924269 -132675514 + MTE2b LTR MaLR 201 356 -23 6 790 335 323 53 15 chr3 26924775 26924907 -132674876 - MTEa LTR MaLR -224 155 19 6 790 288 264 87 123 chr3 26924922 26925060 -132674723 + MER58A DNA MER1_type 86 218 -6 6 790 238 339 16 0 chr3 26925241 26925303 -132674480 + ID_B1 SINE B4 34 96 -128 6 790 1170 120 0 0 chr3 26925334 26925636 -132674147 + (CTG)n Simple_repeat Simple_repeat 1 302 0 6 790 712 145 99 0 chr3 26925658 26925789 -132673994 - B1_Mur4 SINE Alu 0 150 7 6 790 1965 195 37 10 chr3 26926635 26927045 -132672738 - MTC LTR MaLR 0 421 1 6 790 294 289 78 99 chr3 26927387 26927579 -132672204 + MLT1D LTR MaLR 7 194 -311 6 790 1925 114 65 90 chr3 26928344 26928699 -132671084 + ORR1B1 LTR MaLR 41 386 -8 6 790 733 309 4 63 chr3 26929771 26930023 -132669760 + ORR1E LTR MaLR 3 239 -120 6 790 883 137 41 6 chr3 26930090 26930259 -132669524 - Lx LINE L1 0 6654 6480 6 790 4091 146 88 70 chr3 26930260 26931190 -132668593 - RMER17B LTR ERVK -10 948 2 6 790 2130 73 4 4 chr3 26931195 26931470 -132668313 - Lx LINE L1 -155 6499 6225 6 790 1405 251 153 32 chr3 26932181 26932679 -132667104 + RMER13A LTR ERVK 14 571 -289 6 790 256 288 138 43 chr3 26933144 26933282 -132666501 + MIR SINE MIR 111 261 -1 6 790 931 144 23 0 chr3 26933668 26933842 -132665941 + GA-rich Low_complexity Low_complexity 1 178 0 6 790 1810 257 63 8 chr3 26933911 26934417 -132665366 + Lx8 LINE L1 6847 7380 -93 6 790 202 193 35 0 chr3 26934417 26934474 -132665309 + GA-rich Low_complexity Low_complexity 1 59 0 6 790 537 303 43 26 chr3 26934570 26934828 -132664955 + Lx9 LINE L1 5780 6048 -1596 6 790 1830 168 231 14 chr3 26934869 26935297 -132664486 + RLTR17 LTR ERVK 172 692 0 6 790 1012 207 118 85 chr3 26935297 26935769 -132664014 + RMER3D-int LTR ERVK 1 843 -1999 6 790 8169 175 61 47 chr3 26935862 26937866 -132661917 + RMER3D-int LTR ERVK 485 2837 -5 6 790 2034 143 66 17 chr3 26937867 26938216 -132661567 + RLTR17 LTR ERVK 1 366 -326 6 790 3898 218 59 18 chr3 26938285 26939171 -132660612 + Lx9 LINE L1 6296 7217 -427 6 790 387 0 0 0 chr3 26939189 26939232 -132660551 + (GA)n Simple_repeat Simple_repeat 2 44 0 6 790 23 33 0 0 chr3 26939232 26939262 -132660521 + AT_rich Low_complexity Low_complexity 1 30 0 6 790 1715 128 80 10 chr3 26939276 26939576 -132660207 + ORR1A4 LTR MaLR 1 321 -8 6 790 23 0 0 0 chr3 26939654 26939677 -132660106 + AT_rich Low_complexity Low_complexity 1 23 0 6 790 279 0 0 0 chr3 26939741 26939772 -132660011 + (CA)n Simple_repeat Simple_repeat 2 32 0 6 790 547 51 25 0 chr3 26940656 26940735 -132659048 + (TAGA)n Simple_repeat Simple_repeat 2 82 0 6 790 378 265 112 0 chr3 26941328 26941426 -132658357 + RSINE1 SINE B4 9 117 -48 6 790 532 217 23 30 chr3 26941433 26941566 -132658217 + RSINE1 SINE B4 34 165 0 6 790 1356 223 91 43 chr3 26941663 26942038 -132657745 + MTD LTR MaLR 18 410 -9 6 790 276 139 0 0 chr3 26942532 26942575 -132657208 + ID_B1 SINE B4 177 219 -5 6 790 934 113 6 12 chr3 26942576 26942737 -132657046 + (GGGA)n Simple_repeat Simple_repeat 1 160 0 6 790 364 266 97 0 chr3 26942761 26942874 -132656909 + RMER5 LTR ERV1 144 267 -267 6 790 1579 233 83 43 chr3 26942964 26943437 -132656346 + RLTR28B LTR ERVL 1 481 0 6 790 387 0 0 0 chr3 26944634 26944677 -132655106 + (CA)n Simple_repeat Simple_repeat 1 43 0 6 790 211 140 20 20 chr3 26944935 26944986 -132654797 + (TA)n Simple_repeat Simple_repeat 1 51 0 6 790 441 36 0 0 chr3 26944999 26945054 -132654729 + (TG)n Simple_repeat Simple_repeat 2 56 0 6 790 641 250 106 26 chr3 26945175 26945446 -132654337 - L1MA4 LINE L1 -1555 5918 5638 6 790 233 118 51 139 chr3 26945567 26945646 -132654137 - Lx9 LINE L1 -2 7642 7571 6 790 2078 238 84 8 chr3 26946918 26947420 -132652363 + Lx9 LINE L1 6127 6788 -856 6 790 904 291 166 57 chr3 26947422 26947617 -132652166 - Lx9 LINE L1 -4 7640 7431 6 790 468 0 0 0 chr3 26947617 26947669 -132652114 + (TG)n Simple_repeat Simple_repeat 1 52 0 6 790 904 284 228 47 chr3 26947669 26948234 -132651549 - Lx9 LINE L1 -214 7430 6756 6 790 1003 207 8 45 chr3 26948247 26948523 -132651260 + Lx9 LINE L1 5629 5932 -1712 6 790 2073 146 55 71 chr3 26948536 26948971 -132650812 - RLTR28B LTR ERVL -5 476 49 6 790 232 282 42 14 chr3 26948978 26949050 -132650733 + Lx9 LINE L1 6749 6822 -822 6 790 319 235 23 23 chr3 26949159 26949246 -132650537 - B3 SINE B2 0 216 130 6 790 1017 255 71 100 chr3 26949276 26949542 -132650241 - RLTR12B LTR ERVK -12 516 270 6 790 1131 71 6 17 chr3 26949542 26949715 -132650068 + (TTC)n Simple_repeat Simple_repeat 3 173 0 6 790 1017 255 71 100 chr3 26949715 26949928 -132649855 - RLTR12B LTR ERVK -259 269 52 6 790 362 214 14 0 chr3 26949925 26949995 -132649788 - B3 SINE B2 -145 71 1 6 790 335 242 0 39 chr3 26950126 26950281 -132649502 + GA-rich Low_complexity Low_complexity 3 151 0 6 790 914 172 0 11 chr3 26950504 26950686 -132649097 + GA-rich Low_complexity Low_complexity 1 180 0 6 790 729 0 0 0 chr3 26950686 26950767 -132649016 + (GAA)n Simple_repeat Simple_repeat 1 81 0 6 790 898 229 168 20 chr3 26951222 26951520 -132648263 + ORR1E LTR MaLR 1 342 -17 6 790 1653 166 107 49 chr3 26951520 26951952 -132647831 + RMER16 LTR ERVK 1 533 0 6 790 297 348 34 0 chr3 26952083 26952201 -132647582 - B1F SINE Alu -4 145 24 6 790 1258 124 114 0 chr3 26952343 26952545 -132647238 - URR1B DNA MER1_type 0 225 1 6 790 514 313 25 4 chr3 26952617 26952844 -132646939 - Lx9 LINE L1 -370 5930 5680 6 790 1926 132 473 12 chr3 26952850 26953264 -132646519 + RLTR1D LTR ERV1 1 605 0 6 790 352 217 0 0 chr3 26953279 26953371 -132646412 + RLTR21 LTR ERVK 1171 1262 -310 6 790 321 145 0 0 chr3 26953371 26953433 -132646350 + (TATG)n Simple_repeat Simple_repeat 3 64 0 6 790 294 338 35 72 chr3 26953436 26953652 -132646131 - MIRb SINE MIR -63 205 1 6 790 849 147 0 0 chr3 26954202 26954372 -132645411 + (TC)n Simple_repeat Simple_repeat 1 170 0 6 790 300 91 0 0 chr3 26954372 26954416 -132645367 + (TG)n Simple_repeat Simple_repeat 1 44 0 6 790 655 284 107 37 chr3 26954424 26954695 -132645088 - B4 SINE B4 -2 290 1 6 790 636 106 0 0 chr3 26955517 26955611 -132644172 + (TCC)n Simple_repeat Simple_repeat 1 94 0 6 790 324 127 0 0 chr3 26955692 26955747 -132644036 + (TG)n Simple_repeat Simple_repeat 1 55 0 6 790 594 271 14 0 chr3 26955768 26955908 -132643875 - B3A SINE B2 -49 149 8 6 790 1814 167 47 183 chr3 26956418 26956975 -132642808 - RMER6D LTR ERVK -209 481 1 6 790 743 253 98 0 chr3 26957015 26957209 -132642574 - B3 SINE B2 -1 215 3 6 790 827 277 148 12 chr3 26957581 26957913 -132641870 - LTR82B Low_complexity ERVL -453 377 1 6 790 351 44 0 0 chr3 26958165 26958210 -132641573 + (CA)n Simple_repeat Simple_repeat 2 46 0 6 790 249 298 102 21 chr3 26960099 26960243 -132639540 + MLT1F1 LTR MaLR 21 167 -402 6 790 450 213 17 190 chr3 26960278 26960452 -132639331 - B1F2 SINE Alu 0 149 6 6 790 407 262 20 46 chr3 26960478 26960630 -132639153 - RCHARR1 DNA MER1_type -1 973 826 6 790 687 206 0 0 chr3 26960665 26960845 -132638938 + (TG)n Simple_repeat Simple_repeat 1 180 0 6 790 523 247 87 35 chr3 26960845 26961017 -132638766 - B3A SINE B2 -16 182 2 6 790 604 200 100 65 chr3 26961021 26961076 -132638707 - RCHARR1 DNA MER1_type -132 842 786 6 790 633 261 70 25 chr3 26961076 26961276 -132638507 + B3 SINE B2 1 209 -7 6 790 604 200 100 65 chr3 26961276 26961450 -132638333 - RCHARR1 DNA MER1_type -189 785 605 6 790 886 268 35 13 chr3 26961455 26961686 -132638097 - RCHARR1 DNA MER1_type -673 301 66 6 790 362 322 102 13 chr3 26961776 26961974 -132637809 - MLT2B1 LTR ERVL -40 527 310 6 790 305 324 86 26 chr3 26962027 26962179 -132637604 - MLT2B1 LTR ERVL -393 163 3 6 790 266 226 0 0 chr3 26962277 26962339 -132637444 + L1M3 LINE L1 5612 5673 -516 6 790 566 236 140 22 chr3 26962340 26962518 -132637265 + MTE2b LTR MaLR 181 379 0 6 790 1861 159 25 3 chr3 26962561 26962921 -132636862 - ORR1C1 LTR MaLR -2 376 9 6 790 575 307 0 7 chr3 26963431 26963585 -132636198 + B3A SINE B2 15 167 -31 6 790 336 48 0 0 chr3 26963586 26963628 -132636155 + (CA)n Simple_repeat Simple_repeat 1 42 0 6 790 441 238 0 0 chr3 26963669 26963749 -132636034 + ID4 SINE ID 3 82 -1 6 790 26 30 0 0 chr3 26963755 26963788 -132635995 + AT_rich Low_complexity Low_complexity 1 33 0 6 790 634 249 124 0 chr3 26963915 26964084 -132635699 + ID_B1 SINE B4 23 212 -12 6 790 425 234 70 15 chr3 26964084 26964312 -132635471 - L1MC4a LINE L1 -15 7980 7715 6 790 3193 53 2 8 chr3 26964605 26965003 -132634780 + MTA_Mm LTR MaLR 1 396 0 6 790 322 294 152 43 chr3 26965289 26965545 -132634238 - L1MC4a LINE L1 -275 7607 7324 6 790 991 259 119 47 chr3 26965660 26966033 -132633750 - L1MC4a LINE L1 -742 7140 6758 6 790 297 0 0 0 chr3 26966033 26966066 -132633717 + (TA)n Simple_repeat Simple_repeat 2 34 0 6 790 991 259 119 47 chr3 26966066 26966122 -132633661 - L1MC4a LINE L1 -1125 6757 6682 6 790 516 32 0 0 chr3 26966125 26966187 -132633596 + (TG)n Simple_repeat Simple_repeat 1 62 0 6 790 432 0 0 0 chr3 26966187 26966235 -132633548 + (GA)n Simple_repeat Simple_repeat 1 48 0 6 790 716 301 111 3 chr3 26966237 26966544 -132633239 - L1MC4a LINE L1 -1307 6575 6236 6 790 269 304 10 19 chr3 26966552 26966656 -132633127 - MTEb LTR MaLR -14 365 263 6 790 290 294 65 41 chr3 26967092 26967262 -132632521 - L1MC4a LINE L1 -2006 5876 5703 6 790 1044 250 35 113 chr3 26967379 26967785 -132631998 + MTEb LTR MaLR 6 379 0 6 790 234 81 0 0 chr3 26968521 26968558 -132631225 + (A)n Simple_repeat Simple_repeat 1 37 0 6 790 211 261 87 0 chr3 26968609 26968678 -132631105 - ID4 SINE ID -7 76 2 6 790 907 106 0 0 chr3 26969998 26970130 -132629653 + B1_Mus2 SINE Alu 11 142 -5 6 790 21 36 0 0 chr3 26970130 26970158 -132629625 + AT_rich Low_complexity Low_complexity 1 28 0 6 790 879 284 25 68 chr3 26970273 26970553 -132629230 - B4 SINE B4 -23 269 2 6 790 261 203 16 48 chr3 26971581 26971643 -132628140 + B1F1 SINE Alu 12 71 -78 6 790 673 158 17 0 chr3 26971685 26971803 -132627980 + B3 SINE B2 1 120 -96 6 790 949 219 92 18 chr3 26971803 26972099 -132627684 - ORR1B1 LTR MaLR 0 394 1 6 790 332 247 0 0 chr3 26972103 26972176 -132627607 + B3 SINE B2 138 210 -6 6 790 738 289 13 31 chr3 26972279 26972504 -132627279 + ID_B1 SINE B4 2 222 -2 7 790 213 194 0 0 chr3 26972506 26972542 -132627241 + polypurine Low_complexity Low_complexity 1 36 0 7 790 805 286 29 5 chr3 26972636 26972840 -132626943 + ID_B1 SINE B4 3 211 -13 7 790 348 302 40 67 chr3 26972880 26973029 -132626754 - RSINE1 SINE B4 -19 146 2 7 790 297 227 39 26 chr3 26973048 26973125 -132626658 - MLT1A1 LTR MaLR -154 254 177 7 790 395 307 87 0 chr3 26974576 26974703 -132625080 + RSINE1 SINE B4 11 148 -17 7 790 194 91 30 0 chr3 26974849 26974882 -132624901 + (GGA)n Simple_repeat Simple_repeat 3 36 0 7 790 2621 84 131 19 chr3 26975008 26975307 -132624476 + IAPLTR2_Mm LTR ERVK 1 324 -151 7 790 1609 36 0 20 chr3 26975307 26975505 -132624278 - B2_Mm2 SINE B2 0 195 2 7 790 2621 84 131 19 chr3 26975505 26975632 -132624151 + IAPLTR2_Mm LTR ERVK 325 474 -1 7 790 336 205 90 120 chr3 26976734 26976867 -132622916 + ORR1D2 LTR MaLR 1 129 -241 7 790 1837 161 71 14 chr3 26976887 26977252 -132622531 + ORR1B1 LTR MaLR 1 386 -8 7 790 1476 253 130 51 chr3 26977256 26977959 -132621824 + ORR1D2-int LTR MaLR 153 909 -461 7 790 757 229 121 68 chr3 26977987 26978268 -132621515 - ORR1D2 LTR MaLR -9 361 66 7 790 285 29 0 0 chr3 26978272 26978306 -132621477 + (TTTTC)n Simple_repeat Simple_repeat 2 35 0 7 790 1227 48 0 0 chr3 26978307 26978454 -132621329 - B1_Mus2 SINE Alu 0 147 1 7 790 528 211 138 0 chr3 26978784 26978893 -132620890 - RSINE1 SINE B4 -37 128 5 7 790 380 271 39 8 chr3 26979021 26979151 -132620632 - Tigger14a DNA MER2_type -128 196 63 7 790 476 226 198 31 chr3 26979467 26979659 -132620124 + ID_B1 SINE B4 1 224 0 7 790 214 140 53 0 chr3 26979659 26979716 -132620067 + GA-rich Low_complexity Low_complexity 1 60 0 7 790 294 29 0 0 chr3 26980380 26980415 -132619368 + (CA)n Simple_repeat Simple_repeat 1 35 0 7 790 362 314 105 8 chr3 26980448 26980686 -132619097 - L1MA4A LINE L1 -380 5923 5663 7 790 273 252 259 9 chr3 26980766 26980874 -132618909 + RSINE1 SINE B4 31 165 0 7 790 215 189 38 0 chr3 26980875 26980928 -132618855 + (CAGA)n Simple_repeat Simple_repeat 2 56 0 7 790 229 105 0 26 chr3 26981193 26981232 -132618551 + ID4 SINE ID 1 38 -45 7 790 226 143 24 0 chr3 26981200 26981242 -132618541 + tRNA-Ala-GCA tRNA tRNA 1 43 -32 7 790 417 20 0 0 chr3 26981472 26981522 -132618261 + (CA)n Simple_repeat Simple_repeat 2 51 0 7 790 1179 57 0 0 chr3 26982248 26982388 -132617395 + B1_Mm SINE Alu 2 141 -6 7 790 210 37 0 0 chr3 26982390 26982417 -132617366 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 7 790 1084 98 0 0 chr3 26982775 26982928 -132616855 + ORR1A3 LTR MaLR 171 323 -3 7 790 1786 211 82 40 chr3 26983171 26983729 -132616054 - Lx6 LINE L1 -5 7691 6854 7 790 226 212 197 0 chr3 26983845 26983911 -132615872 - L1M5 LINE L1 -747 5399 5321 7 790 348 43 0 0 chr3 26984356 26984402 -132615381 + (TC)n Simple_repeat Simple_repeat 1 46 0 7 790 279 0 0 0 chr3 26984402 26984432 -132615351 + (CA)n Simple_repeat Simple_repeat 1 31 0 7 790 319 248 68 19 chr3 26984494 26984597 -132615186 + PB1D10 SINE Alu 8 115 -2 7 790 231 232 14 0 chr3 26984693 26984762 -132615021 + L1MA8 LINE L1 6221 6290 -1 7 790 889 184 48 67 chr3 26984879 26985089 -132614694 + B3 SINE B2 11 216 0 7 790 527 250 15 8 chr3 26985171 26985304 -132614479 + ID_B1 SINE B4 86 219 -5 7 790 236 294 81 32 chr3 26985589 26985712 -132614071 + MLT1F-int LTR MaLR 349 477 -1012 7 790 970 296 74 28 chr3 26985839 26986263 -132613520 + MLT2B1 LTR ERVL 8 405 -9 7 790 487 275 15 8 chr3 26986269 26986401 -132613382 + ERVL-B4-int LTR ERVL 1 133 -5581 7 790 321 346 0 29 chr3 26986527 26986664 -132613119 + ERVL-B4-int LTR ERVL 296 428 -5286 7 790 334 311 19 0 chr3 26986859 26986965 -132612818 + ID_B1 SINE B4 29 136 -88 7 790 211 320 25 37 chr3 26986937 26987018 -132612765 + B1_Mus1 SINE Alu 29 108 -40 7 790 471 277 83 73 chr3 26988398 26988686 -132611097 - B4A SINE B4 0 292 2 7 790 514 105 35 0 chr3 26988731 26988817 -132610966 - B2_Mm1a SINE B2 0 193 105 7 790 32206 74 6 2 chr3 26988817 26993090 -132606693 + L1Md_F2 LINE L1 1297 5587 -296 7 790 8244 45 0 2 chr3 26993090 26994086 -132605697 + L1Md_F2 LINE L1 5588 6581 -1 7 790 1360 92 36 0 chr3 26994087 26994283 -132605500 + L1_Mus1 LINE L1 4323 4525 -1358 7 790 7729 63 9 0 chr3 26994277 26995471 -132604312 + L1_Mus1 LINE L1 5359 6567 0 7 790 23 0 0 0 chr3 26995471 26995494 -132604289 + AT_rich Low_complexity Low_complexity 1 23 0 7 790 1256 89 6 0 chr3 26997645 26997825 -132601958 - L1_Mus2 LINE L1 -3 6563 6383 7 790 392 247 0 11 chr3 26998034 26998128 -132601655 - B3A SINE B2 -105 93 1 7 790 703 177 45 15 chr3 26999379 26999511 -132600272 + B1_Mur2 SINE Alu 1 136 -13 7 790 502 229 16 33 chr3 27000374 27000496 -132599287 - PB1D9 SINE Alu 0 120 1 1 790 1039 68 113 0 chr3 27000685 27000818 -132598965 + B1_Mus1 SINE Alu 1 148 0 2 98 243 0 0 0 chr3 27000829 27000856 -132598927 + (CAAAC)n Simple_repeat Simple_repeat 3 29 0 3 791 387 298 51 38 chr3 27001012 27001169 -132598614 - B4 SINE B4 -5 287 129 4 791 359 318 34 34 chr3 27002196 27002372 -132597411 + RMER4A LTR ERVK 12 187 -279 5 791 1295 93 54 21 chr3 27002391 27002577 -132597206 - B2_Mm2 SINE B2 -3 192 1 6 791 554 275 99 16 chr3 27003757 27003949 -132595834 + B3 SINE B2 1 208 -8 7 791 362 320 25 57 chr3 27004042 27004201 -132595582 + RSINE1 SINE B4 1 154 -11 8 791 186 133 0 0 chr3 27005169 27005199 -132594584 + (A)n Simple_repeat Simple_repeat 1 30 0 9 791 688 225 99 5 chr3 27005578 27005770 -132594013 + B3 SINE B2 1 210 -6 1 791 1254 41 7 14 chr3 27005811 27005959 -132593824 + B1_Mus1 SINE Alu 2 148 0 1 791 966 186 31 104 chr3 27007242 27007464 -132592319 - B3 SINE B2 -8 208 3 1 791 288 91 0 0 chr3 27007681 27007725 -132592058 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 791 3067 227 130 43 chr3 27008456 27009395 -132590388 + RMER1B Other Other 46 1066 0 1 791 532 260 101 63 chr3 27011171 27011409 -132588374 + MTE2a LTR MaLR 51 297 -82 1 791 728 137 418 0 chr3 27011739 27011885 -132587898 + B3 SINE B2 1 207 -9 1 791 26 0 0 0 chr3 27011887 27011913 -132587870 + AT_rich Low_complexity Low_complexity 1 26 0 1 791 2174 189 18 20 chr3 27011956 27012448 -132587335 + L1Md_A LINE L1 402 892 -5832 1 791 2373 43 0 0 chr3 27012476 27012753 -132587030 + L1Md_F3 LINE L1 5310 5586 -297 1 791 8494 43 4 20 chr3 27012754 27013767 -132586016 + L1Md_F3 LINE L1 5588 6584 0 1 791 1145 50 35 0 chr3 27013783 27013924 -132585859 + B1_Mus2 SINE Alu 2 147 0 2 791 210 105 0 0 chr3 27013924 27013962 -132585821 + (CAAA)n Simple_repeat Simple_repeat 3 40 0 2 791 241 231 90 0 chr3 27014869 27014947 -132584836 - RSINE1 SINE B4 -34 131 47 2 791 229 329 0 0 chr3 27015105 27015178 -132584605 + ID2 SINE ID 5 77 -6 2 791 380 250 106 0 chr3 27015694 27015798 -132583985 - PB1D9 SINE Alu -1 119 5 2 791 560 275 25 0 chr3 27015951 27016071 -132583712 - RSINE1 SINE B4 -33 132 10 2 791 856 223 41 15 chr3 27016115 27016311 -132583472 + B3 SINE B2 1 201 -15 2 791 234 205 53 18 chr3 27017332 27017421 -132582362 + B1F SINE Alu 20 139 -10 2 791 186 43 0 0 chr3 27017426 27017449 -132582334 + (CAA)n Simple_repeat Simple_repeat 1 23 0 2 791 33 43 0 0 chr3 27017843 27017890 -132581893 + AT_rich Low_complexity Low_complexity 1 47 0 2 791 25 31 0 0 chr3 27018003 27018035 -132581748 + AT_rich Low_complexity Low_complexity 1 32 0 3 791 393 227 141 20 chr3 27018369 27018468 -132581315 + PB1D10 SINE Alu 4 114 -3 3 791 2215 149 77 10 chr3 27018619 27019011 -132580772 + MTC LTR MaLR 3 420 -1 3 791 1843 174 70 40 chr3 27019803 27020204 -132579579 + MTC LTR MaLR 1 413 -8 3 791 380 237 11 21 chr3 27020361 27020456 -132579327 + B1F SINE Alu 6 99 -50 3 791 180 0 0 0 chr3 27020568 27020588 -132579195 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 3 791 269 342 50 8 chr3 27021079 27021200 -132578583 - B3 SINE B2 -7 209 84 3 791 235 338 0 53 chr3 27023160 27023235 -132576548 + ID2 SINE ID 3 73 -10 3 791 552 274 87 4 chr3 27023515 27023697 -132576086 + B3A SINE B2 16 212 -4 3 791 803 83 0 40 chr3 27023742 27023868 -132575915 + B1_Mus1 SINE Alu 28 148 0 3 791 216 0 0 0 chr3 27023868 27023892 -132575891 + (A)n Simple_repeat Simple_repeat 1 24 0 4 791 198 0 0 0 chr3 27023955 27023977 -132575806 + (CCA)n Simple_repeat Simple_repeat 1 22 0 4 791 284 258 181 42 chr3 27025537 27025703 -132574080 + ID_B1 SINE B4 30 218 -6 4 791 218 200 0 0 chr3 27026347 27026387 -132573396 + ID4_ SINE ID 41 80 -3 4 791 494 70 0 14 chr3 27027134 27027206 -132572577 + (CA)n Simple_repeat Simple_repeat 2 72 0 4 791 273 353 58 10 chr3 27027230 27027333 -132572450 + ID_B1 SINE B4 17 124 -100 4 791 617 302 5 50 chr3 27027477 27027679 -132572104 + B3A SINE B2 2 194 -4 4 791 831 198 12 12 chr3 27027723 27027887 -132571896 + B2_Mm2 SINE B2 2 165 -30 4 791 398 187 170 32 chr3 27028133 27028227 -132571556 - PB1D7 SINE Alu -2 118 12 4 791 411 132 0 0 chr3 27028691 27028759 -132571024 + (CA)n Simple_repeat Simple_repeat 2 69 0 4 791 297 244 122 61 chr3 27029417 27029548 -132570235 - MER58A DNA MER1_type 0 224 86 5 791 1197 277 38 19 chr3 27029548 27029967 -132569816 + Lx7 LINE L1 6894 7320 -376 5 791 257 246 159 39 chr3 27029967 27030174 -132569609 + Lx7 LINE L1 7449 7680 -16 5 791 665 215 239 0 chr3 27030317 27030480 -132569303 + B3 SINE B2 2 203 -13 5 791 670 169 287 6 chr3 27031055 27031222 -132568561 + B3 SINE B2 1 214 -2 5 791 646 218 40 33 chr3 27031532 27031684 -132568099 - RSINE1 SINE B4 -10 155 3 5 791 207 182 0 0 chr3 27031699 27031732 -132568051 + A-rich Low_complexity Low_complexity 2 34 0 5 791 507 213 9 36 chr3 27031846 27031958 -132567825 + B1_Mur2 SINE Alu 41 149 0 5 791 847 65 187 0 chr3 27031976 27032099 -132567684 - B1_Mus2 SINE Alu 0 147 2 5 791 189 0 0 0 chr3 27032564 27032585 -132567198 + (CAAA)n Simple_repeat Simple_repeat 3 23 0 5 791 268 302 126 39 chr3 27032637 27032971 -132566812 + L1MD LINE L1 4947 5309 -837 5 791 327 345 67 0 chr3 27033412 27033531 -132566252 + RSINE1 SINE B4 10 136 -29 6 791 358 278 29 58 chr3 27033943 27034046 -132565737 - PB1D10 SINE Alu -17 100 1 6 791 3628 25 5 0 chr3 27034179 27034573 -132565210 + MTA_Mm LTR MaLR 1 396 0 6 791 226 349 48 48 chr3 27034684 27034976 -132564807 - B4A SINE B4 0 292 1 6 791 613 245 44 56 chr3 27035077 27035237 -132564546 + ID_B1 SINE B4 2 159 -65 6 791 442 308 7 37 chr3 27035676 27035811 -132563972 + B1F2 SINE Alu 9 139 -10 6 791 328 244 41 72 chr3 27036525 27036622 -132563161 + PB1D10 SINE Alu 15 108 -9 6 791 231 204 45 0 chr3 27036916 27036960 -132562823 + ID_B1 SINE B4 178 223 -1 6 791 735 280 130 13 chr3 27038175 27038414 -132561369 - MTEa LTR MaLR -62 317 51 6 791 383 370 26 0 chr3 27039114 27039268 -132560515 - RSINE1 SINE B4 -5 160 3 6 791 1212 22 0 0 chr3 27039298 27039432 -132560351 + B1_Mus1 SINE Alu 2 135 -13 6 791 324 0 0 0 chr3 27039432 27039468 -132560315 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 7 791 3513 41 5 0 chr3 27039590 27039984 -132559799 + MTA_Mm LTR MaLR 1 396 0 7 791 497 267 210 28 chr3 27040279 27040460 -132559323 + B3 SINE B2 3 216 0 7 791 1542 243 68 80 chr3 27040875 27041510 -132558273 + RMER13A LTR ERVK 40 666 -194 7 791 306 0 0 0 chr3 27042431 27042465 -132557318 + (TG)n Simple_repeat Simple_repeat 2 35 0 7 791 299 269 84 21 chr3 27042581 27042676 -132557107 + RSINE1 SINE B4 63 163 -2 7 791 261 330 8 92 chr3 27042761 27042844 -132556939 + PB1D10 SINE Alu 6 89 -28 7 791 345 248 145 24 chr3 27042844 27042968 -132556815 + B1_Mus1 SINE Alu 5 143 -5 7 791 261 330 8 92 chr3 27042968 27043004 -132556779 + PB1D10 SINE Alu 90 115 -2 7 791 201 74 0 0 chr3 27043216 27043243 -132556540 + (TTTTC)n Simple_repeat Simple_repeat 3 29 0 7 791 1221 82 0 0 chr3 27043243 27043389 -132556394 - B1_Mus2 SINE Alu 0 147 2 7 791 401 269 205 42 chr3 27043432 27043622 -132556161 - ID_B1 SINE B4 -2 222 2 8 791 289 244 223 16 chr3 27043703 27043824 -132555959 + B1F SINE Alu 1 146 -3 8 791 807 230 59 0 chr3 27044314 27044501 -132555282 - B3A SINE B2 0 198 1 8 791 180 0 0 0 chr3 27045082 27045102 -132554681 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 8 791 874 73 182 24 chr3 27045102 27045217 -132554566 - B1_Mus2 SINE Alu -8 139 2 8 791 1082 117 7 0 chr3 27045304 27045449 -132554334 + B1_Mus2 SINE Alu 2 147 0 8 791 216 200 0 0 chr3 27045451 27045501 -132554282 + A-rich Low_complexity Low_complexity 1 50 0 8 791 337 271 0 0 chr3 27046272 27046342 -132553441 - ID4 SINE ID -1 82 13 8 791 215 136 23 0 chr3 27046649 27046670 -132553113 + A-rich Low_complexity Low_complexity 2 22 0 8 791 818 139 64 21 chr3 27046670 27046810 -132552973 + B1_Mm SINE Alu 2 147 0 8 791 215 136 23 0 chr3 27046810 27046832 -132552951 + A-rich Low_complexity Low_complexity 23 45 0 9 791 384 251 172 134 chr3 27046927 27047299 -132552484 + MLT1B LTR MaLR 2 387 -3 9 791 322 230 0 0 chr3 27047308 27047371 -132552412 + ID4_ SINE ID 3 65 -87 9 791 21 36 0 0 chr3 27047717 27047745 -132552038 + AT_rich Low_complexity Low_complexity 1 28 0 9 791 1465 78 10 20 chr3 27048132 27048327 -132551456 + B2_Mm1t SINE B2 1 193 0 9 791 943 103 12 126 chr3 27048754 27048921 -132550862 + B1_Mur4 SINE Alu 2 149 -1 9 791 585 163 361 0 chr3 27049170 27049336 -132550447 - URR1A DNA MER1_type 0 226 1 9 791 418 206 81 25 chr3 27050744 27050875 -132548908 + Lx7 LINE L1 6712 6859 -837 9 791 426 121 0 0 chr3 27050910 27050976 -132548807 + (GGGA)n Simple_repeat Simple_repeat 3 68 0 9 791 729 224 35 0 chr3 27051030 27051173 -132548610 + B1_Mur2 SINE Alu 1 148 -1 9 791 432 259 156 36 chr3 27051704 27051896 -132547887 + ID_B1 SINE B4 3 217 -7 1 791 682 269 42 84 chr3 27053578 27053793 -132545990 - B3 SINE B2 -9 207 2 1 791 313 237 97 0 chr3 27054350 27054443 -132545340 + ID_B1 SINE B4 105 206 -18 1 791 459 274 80 0 chr3 27054702 27054815 -132544968 - RSINE1 SINE B4 -38 127 6 1 791 839 240 9 76 chr3 27054846 27055071 -132544712 + B3 SINE B2 2 211 -5 1 791 1671 170 21 42 chr3 27055609 27055989 -132543794 + RMER10B LTR ERVL 27 398 0 1 791 356 291 15 10 chr3 27056029 27056119 -132543664 + ID_B1 SINE B4 76 158 -66 1 791 1308 208 67 67 chr3 27056119 27056367 -132543416 + Lx8 LINE L1 6577 6831 -642 1 791 909 137 26 42 chr3 27056365 27056556 -132543227 - B2_Mm2 SINE B2 -6 189 2 1 791 1308 251 95 69 chr3 27056556 27056734 -132543049 + Lx8 LINE L1 6804 7009 -451 1 791 373 187 8 40 chr3 27056743 27056997 -132542786 + GA-rich Low_complexity Low_complexity 1 245 0 1 791 274 199 0 55 chr3 27057008 27057189 -132542594 + GA-rich Low_complexity Low_complexity 2 172 0 1 791 349 186 0 55 chr3 27057231 27057413 -132542370 + GA-rich Low_complexity Low_complexity 1 172 0 1 791 298 194 5 47 chr3 27057424 27057854 -132541929 + GA-rich Low_complexity Low_complexity 1 411 0 1 791 750 241 222 59 chr3 27057855 27058261 -132541522 + Lx8 LINE L1 6993 7464 -9 1 791 337 250 0 70 chr3 27058304 27058367 -132541416 + ID_B1 SINE B4 143 203 -21 1 791 3139 49 201 2 chr3 27058367 27058794 -132540989 - RLTR1B LTR ERV1 0 512 1 1 791 337 250 0 70 chr3 27058794 27058816 -132540967 + ID_B1 SINE B4 204 222 -2 1 791 745 145 33 80 chr3 27058834 27058984 -132540799 + B1_Mus1 SINE Alu 6 148 0 1 791 815 98 0 8 chr3 27058987 27059111 -132540672 + (GGAA)n Simple_repeat Simple_repeat 2 124 0 1 791 885 246 0 6 chr3 27059141 27059309 -132540474 - B3 SINE B2 -48 168 2 1 791 198 0 0 0 chr3 27059317 27059339 -132540444 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 1 791 619 259 80 20 chr3 27059639 27059840 -132539943 - ID_B1 SINE B4 -10 214 2 1 791 2543 163 69 30 chr3 27061152 27061659 -132538124 + RLTR11A2 LTR ERVK 1 527 0 1 791 1361 71 39 0 chr3 27062028 27062210 -132537573 + B2_Mm2 SINE B2 2 190 -5 1 791 691 265 58 33 chr3 27062580 27062822 -132536961 - RLTR42-int LTR ERVK -4174 1348 1101 1 791 4867 145 56 40 chr3 27063142 27064012 -132535771 + RMER19B LTR ERVK 1 884 -18 1 791 1286 34 0 0 chr3 27064012 27064159 -132535624 + B1_Mm SINE Alu 1 147 0 1 791 30 0 0 0 chr3 27064159 27064189 -132535594 + AT_rich Low_complexity Low_complexity 1 30 0 1 791 668 249 130 14 chr3 27064213 27064421 -132535362 - MTC-int LTR MaLR -279 979 748 1 791 923 234 208 13 chr3 27064411 27064719 -132535064 - MTC-int LTR MaLR -715 543 176 1 791 6479 104 1 121 chr3 27065928 27067138 -132532645 - L1_Mur2 LINE L1 -1070 4807 3743 1 791 1521 175 33 51 chr3 27067133 27067344 -132532439 + Lx5 LINE L1 5051 5261 -616 1 791 1115 81 119 23 chr3 27067344 27067521 -132532262 + B2_Mm2 SINE B2 2 195 0 1 791 1521 175 33 51 chr3 27067521 27067641 -132532142 + Lx5 LINE L1 5262 5376 -501 1 791 391 179 95 0 chr3 27067641 27067725 -132532058 - RMER17B LTR ERVK 0 958 867 1 791 491 181 58 33 chr3 27067703 27067823 -132531960 - RMER17B LTR ERVK -269 689 567 1 791 247 91 0 0 chr3 27067823 27067856 -132531927 + Lx5 LINE L1 5892 5924 -1134 1 791 1365 75 9 54 chr3 27067881 27068105 -132531678 + RLTR19-int LTR ERVK 1803 2016 -4121 1 791 782 222 47 40 chr3 27068106 27068395 -132531388 + Lx5 LINE L1 5910 6209 -849 1 791 405 178 0 0 chr3 27068465 27068538 -132531245 + ID_B1 SINE B4 86 158 -66 1 791 278 321 64 0 chr3 27068538 27068574 -132531209 + PB1D7 SINE Alu 5 120 0 1 791 446 277 25 0 chr3 27068722 27068841 -132530942 - ID_B1 SINE B4 -102 122 1 1 791 329 250 184 29 chr3 27069396 27069448 -132530335 - ID_B1 SINE B4 -2 222 166 1 791 339 44 0 0 chr3 27069448 27069493 -132530290 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 791 329 250 184 29 chr3 27069493 27069543 -132530240 - ID_B1 SINE B4 -59 165 106 1 791 300 253 136 11 chr3 27069562 27069650 -132530133 - B1F2 SINE Alu -9 140 42 1 791 6510 141 97 15 chr3 27069651 27070923 -132528860 - ORR1A2-int LTR MaLR -587 1376 1 1 791 2332 82 3 42 chr3 27070927 27071258 -132528525 - ORR1A2 LTR MaLR -8 319 2 1 791 519 238 0 0 chr3 27071258 27071361 -132528422 - ID_B1 SINE B4 -17 207 105 1 791 401 297 45 38 chr3 27071361 27071389 -132528394 - B1F SINE Alu -15 134 1 1 791 323 259 34 59 chr3 27071426 27071545 -132528238 + PB1D10 SINE Alu 1 116 -1 1 791 8214 41 4 1 chr3 27071991 27073118 -132526665 - L1Md_F2 LINE L1 -12 6570 5441 1 791 348 306 27 18 chr3 27073169 27073279 -132526504 + PB1D7 SINE Alu 5 115 -5 1 791 258 32 0 0 chr3 27073436 27073467 -132526316 + (CA)n Simple_repeat Simple_repeat 2 32 0 1 791 336 24 0 0 chr3 27073467 27073507 -132526276 + (GA)n Simple_repeat Simple_repeat 2 42 0 1 791 1977 265 112 93 chr3 27073522 27074491 -132525292 + Lx8 LINE L1 6487 7473 0 1 791 576 67 36 71 chr3 27074497 27074609 -132525174 + Lx LINE L1 6547 6654 0 1 791 271 247 24 12 chr3 27074634 27074716 -132525067 - ID2 SINE ID 0 83 1 1 791 1510 180 174 3 chr3 27075122 27075450 -132524333 - ORR1C2 LTR MaLR 0 384 1 1 791 516 244 61 8 chr3 27075488 27075620 -132524163 - ID_B1 SINE B4 -4 220 82 1 791 224 0 0 157 chr3 27075707 27075815 -132523968 + (CATAG)n Simple_repeat Simple_repeat 2 92 0 1 791 249 268 55 27 chr3 27075860 27075933 -132523850 + MT2B2 LTR ERVL 180 254 -330 1 791 223 276 36 84 chr3 27075873 27075956 -132523827 + PB1D10 SINE Alu 39 117 0 1 791 1226 222 256 69 chr3 27076262 27076299 -132523484 - MT2A LTR ERVL 0 533 499 1 791 297 0 0 0 chr3 27076299 27076332 -132523451 + (TG)n Simple_repeat Simple_repeat 2 34 0 1 791 1226 222 256 69 chr3 27076332 27076743 -132523040 - MT2A LTR ERVL -35 498 1 1 791 402 308 99 40 chr3 27076872 27077024 -132522759 - B4A SINE B4 -12 280 120 1 791 1176 106 28 0 chr3 27077044 27077223 -132522560 - B2_Mm2 SINE B2 -8 187 4 1 791 240 125 104 0 chr3 27077223 27077271 -132522512 - RMER19B LTR ERVK -849 53 1 1 791 1466 73 11 0 chr3 27077278 27077469 -132522314 - B2_Mm1t SINE B2 0 193 1 1 791 254 337 56 0 chr3 27077469 27077558 -132522225 - B4A SINE B4 -197 95 2 1 791 421 343 95 23 chr3 27077622 27077926 -132521857 + L1M2 LINE L1 4943 5268 -875 1 791 248 169 45 15 chr3 27077948 27078014 -132521769 + L1M2 LINE L1 5319 5386 -914 1 791 1211 41 7 0 chr3 27078041 27078186 -132521597 - B1_Mus2 SINE Alu 0 147 2 1 791 470 278 143 134 chr3 27078585 27079047 -132520736 + RLTR40 LTR ERVK 73 538 -279 1 791 264 100 0 0 chr3 27079127 27079167 -132520616 + (T)n Simple_repeat Simple_repeat 1 40 0 1 791 438 239 174 0 chr3 27079173 27079311 -132520472 - ID_B1 SINE B4 -59 165 4 1 791 465 180 16 16 chr3 27079410 27079534 -132520249 + CT-rich Low_complexity Low_complexity 2 125 0 1 791 790 201 8 0 chr3 27079557 27079691 -132520092 - B1_Mur1 SINE Alu -14 135 1 1 791 223 385 11 0 chr3 27079716 27079807 -132519976 + MIRb SINE MIR 151 242 -26 1 791 443 246 74 33 chr3 27079902 27080024 -132519759 + ID_B1 SINE B4 88 214 -10 1 791 224 163 70 0 chr3 27079991 27080034 -132519749 + PB1D7 SINE Alu 75 120 0 1 791 737 171 0 125 chr3 27080064 27080224 -132519559 + B1_Mur4 SINE Alu 5 144 -6 1 791 299 309 86 81 chr3 27080645 27080842 -132518941 + B3A SINE B2 1 198 0 1 791 228 315 0 64 chr3 27080880 27080958 -132518825 - ID4_ SINE ID -9 74 2 1 791 377 252 72 0 chr3 27080970 27081081 -132518702 - PB1D7 SINE Alu -1 119 1 1 791 369 0 0 0 chr3 27081142 27081183 -132518600 + (TC)n Simple_repeat Simple_repeat 2 42 0 1 791 279 93 0 0 chr3 27081183 27081225 -132518558 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 791 258 217 0 0 chr3 27081238 27081284 -132518499 - B1_Mur1 SINE Alu -26 123 78 1 791 489 246 39 31 chr3 27081466 27081596 -132518187 - ID_B1 SINE B4 0 224 94 1 791 555 218 121 0 chr3 27083208 27083332 -132516451 - B1_Mus2 SINE Alu 0 147 9 1 791 650 183 207 0 chr3 27083403 27083572 -132516211 - B3 SINE B2 -9 207 4 1 791 449 238 115 0 chr3 27083589 27083711 -132516072 - B1_Mur2 SINE Alu -1 148 13 1 791 249 334 18 0 chr3 27084633 27084708 -132515075 - ID4_ SINE ID -70 82 6 1 791 423 175 0 48 chr3 27084760 27084844 -132514939 - B1_Mur2 SINE Alu -16 133 54 1 791 701 186 28 69 chr3 27085073 27085217 -132514566 + B1_Mur2 SINE Alu 10 147 -2 1 791 221 167 0 0 chr3 27085355 27085397 -132514386 + T-rich Low_complexity Low_complexity 4 45 0 1 791 284 185 47 47 chr3 27085398 27085483 -132514300 - PB1D10 SINE Alu -2 115 31 1 791 244 284 77 137 chr3 27085401 27085634 -132514149 - ID_B1 SINE B4 -2 222 4 1 791 219 159 136 0 chr3 27085647 27085691 -132514092 - MER5B DNA MER1_type -124 54 5 1 791 230 300 100 0 chr3 27085698 27085778 -132514005 + PB1D10 SINE Alu 29 116 -1 1 791 1207 114 171 0 chr3 27085954 27086147 -132513636 + URR1A DNA MER1_type 1 226 0 1 791 515 292 161 0 chr3 27086271 27086463 -132513320 + ID_B1 SINE B4 2 224 0 1 791 310 250 69 0 chr3 27086886 27086958 -132512825 + ID4 SINE ID 7 83 0 1 791 640 290 34 58 chr3 27087021 27087226 -132512557 + B4A SINE B4 7 206 -86 1 791 216 0 0 0 chr3 27087385 27087409 -132512374 + (CTAAG)n Simple_repeat Simple_repeat 4 27 0 1 791 485 158 146 24 chr3 27087605 27087728 -132512055 - MTEa LTR MaLR -53 326 189 1 791 237 337 20 0 chr3 27088465 27088563 -132511220 + PB1D10 SINE Alu 1 100 -17 1 791 282 284 20 40 chr3 27088759 27088858 -132510925 + ID_B1 SINE B4 80 176 -48 1 791 417 263 10 10 chr3 27088773 27088873 -132510910 + PB1D10 SINE Alu 11 110 -7 1 791 297 225 70 0 chr3 27088904 27088975 -132510808 + ID4 SINE ID 5 80 -3 1 791 310 315 0 11 chr3 27089190 27089280 -132510503 + PB1D10 SINE Alu 9 97 -20 1 791 214 283 36 36 chr3 27089280 27089335 -132510448 - ID4_ SINE ID -24 59 5 1 791 247 333 11 0 chr3 27089372 27089459 -132510324 + (TG)n Simple_repeat Simple_repeat 2 89 0 1 791 580 310 97 0 chr3 27089461 27089606 -132510177 - RSINE1 SINE B4 -4 161 3 1 791 277 212 86 12 chr3 27089694 27089775 -132510008 - B4 SINE B4 -142 150 64 1 791 2108 127 31 40 chr3 27089941 27090295 -132509488 + ORR1B2 LTR MaLR 2 352 -15 2 791 303 307 90 67 chr3 27090275 27090453 -132509330 - RMER15 LTR ERVL -42 533 352 2 791 408 132 0 0 chr3 27090761 27090829 -132508954 + ID_B1 SINE B4 86 153 -71 2 791 340 253 11 11 chr3 27090829 27090853 -132508930 + PB1D10 SINE Alu 5 96 -21 2 791 442 271 91 32 chr3 27091426 27091613 -132508170 - ID_B1 SINE B4 -5 219 22 2 791 2012 87 44 88 chr3 27091689 27092031 -132507752 + ORR1A2 LTR MaLR 1 327 0 2 791 299 296 113 0 chr3 27092513 27092628 -132507155 + B1F SINE Alu 16 143 -6 2 791 200 264 78 85 chr3 27093118 27093259 -132506524 - L3 LINE CR1 -1737 2752 2613 2 791 348 241 60 0 chr3 27093428 27093511 -132506272 - PB1D10 SINE Alu -12 105 18 2 791 563 136 0 9 chr3 27093621 27093732 -132506051 + (CA)n Simple_repeat Simple_repeat 2 111 0 2 791 580 266 30 37 chr3 27093817 27093981 -132505802 - RSINE1 SINE B4 0 165 3 2 791 3259 196 67 187 chr3 27094070 27095227 -132504556 - RMER1A Other Other -3 1063 3 2 791 308 197 30 0 chr3 27095549 27095615 -132504168 + tRNA-Ala-GCA tRNA tRNA 5 72 -3 2 791 520 268 15 23 chr3 27095911 27096041 -132503742 + ID_B1 SINE B4 88 216 -8 2 791 277 231 240 0 chr3 27096181 27096285 -132503498 + B1F1 SINE Alu 1 129 -20 2 791 321 89 0 0 chr3 27096327 27096372 -132503411 + (TCTA)n Simple_repeat Simple_repeat 4 48 0 2 791 445 248 8 23 chr3 27096895 27097023 -132502760 - MER57E1 LTR ERV1 -191 181 56 2 791 673 159 125 16 chr3 27097201 27097329 -132502454 + B1_Mur2 SINE Alu 1 142 -7 2 791 215 213 21 0 chr3 27097359 27097406 -132502377 - B3 SINE B2 -69 147 100 2 791 749 207 7 0 chr3 27097406 27097546 -132502237 - B3 SINE B2 -75 141 1 2 791 255 267 82 7 chr3 27097556 27097711 -132502072 - L1MA6 LINE L1 -8 6292 6125 2 791 405 275 7 64 chr3 27097720 27097860 -132501923 - ID_B1 SINE B4 -1 223 92 2 791 251 233 0 0 chr3 27097844 27097887 -132501896 + B3A SINE B2 84 126 -72 2 791 351 0 0 0 chr3 27097912 27097951 -132501832 + (CA)n Simple_repeat Simple_repeat 2 40 0 2 791 273 316 26 9 chr3 27097965 27098080 -132501703 - L1MA6 LINE L1 -199 6101 5985 2 791 489 154 0 0 chr3 27098475 27098566 -132501217 + CT-rich Low_complexity Low_complexity 2 92 0 2 791 336 265 36 0 chr3 27098651 27098734 -132501049 + U6 snRNA snRNA 1 86 -21 2 791 610 296 26 73 chr3 27098883 27099185 -132500598 + B4A SINE B4 1 288 -4 2 791 23 33 0 0 chr3 27099202 27099232 -132500551 + AT_rich Low_complexity Low_complexity 1 30 0 2 791 1303 96 11 0 chr3 27099466 27099654 -132500129 + B2_Mm1t SINE B2 4 193 0 2 791 426 257 19 9 chr3 27099914 27100020 -132499763 - PB1D7 SINE Alu -13 107 1 2 791 347 247 97 0 chr3 27100498 27100591 -132499192 + B1F SINE Alu 46 147 -2 2 791 222 217 22 0 chr3 27101096 27101142 -132498641 + CT-rich Low_complexity Low_complexity 2 48 0 2 791 343 280 9 58 chr3 27101281 27101393 -132498390 - PB1D10 SINE Alu -3 124 9 2 791 1534 27 16 5 chr3 27101408 27101592 -132498191 - B2_Mm2 SINE B2 -8 187 2 2 791 658 232 14 0 chr3 27101600 27101738 -132498045 - B1_Mur1 SINE Alu -9 140 1 2 791 207 0 0 0 chr3 27101999 27102022 -132497761 + (CAGA)n Simple_repeat Simple_repeat 4 26 0 2 791 258 336 0 14 chr3 27102069 27102085 -132497698 - L1M2 LINE L1 -284 5840 5825 2 791 500 151 0 0 chr3 27102085 27102158 -132497625 - ID4_ SINE ID -9 74 2 2 791 631 329 29 13 chr3 27102158 27102472 -132497311 - L1M2 LINE L1 -300 5824 5504 2 791 207 100 0 0 chr3 27102472 27102502 -132497281 + (TCC)n Simple_repeat Simple_repeat 2 31 0 2 791 342 0 0 0 chr3 27102577 27102615 -132497168 + (TA)n Simple_repeat Simple_repeat 1 38 0 2 791 324 0 0 0 chr3 27102615 27102650 -132497133 + (GA)n Simple_repeat Simple_repeat 2 37 0 2 791 1040 82 0 27 chr3 27102650 27102800 -132496983 - B2_Mm2 SINE B2 -49 146 1 2 791 340 208 40 30 chr3 27102803 27102902 -132496881 - L1M2 LINE L1 -854 5437 5338 2 791 319 307 14 106 chr3 27103030 27103172 -132496611 - RSINE1 SINE B4 -9 156 28 2 791 756 316 44 3 chr3 27103250 27103548 -132496235 - L1M2 LINE L1 -959 5184 4875 2 791 1363 181 180 8 chr3 27104467 27104823 -132494960 + MTD LTR MaLR 3 419 0 2 791 813 232 103 0 chr3 27106023 27106208 -132493575 - B3 SINE B2 -6 210 7 2 791 584 298 17 45 chr3 27106872 27107048 -132492735 + B3A SINE B2 1 171 -27 2 791 374 223 296 73 chr3 27107371 27107550 -132492233 + ID_B1 SINE B4 2 220 -4 2 791 821 245 10 15 chr3 27108191 27108390 -132491393 - B3A SINE B2 0 198 1 2 791 24 32 0 0 chr3 27109089 27109120 -132490663 + AT_rich Low_complexity Low_complexity 1 31 0 2 791 592 295 87 115 chr3 27109752 27109972 -132489811 + B4A SINE B4 12 212 -80 2 791 252 0 0 0 chr3 27109972 27110000 -132489783 + (CA)n Simple_repeat Simple_repeat 1 28 0 2 791 592 295 87 115 chr3 27110000 27110066 -132489717 + B4A SINE B4 213 290 -2 2 791 491 164 26 16 chr3 27110131 27110255 -132489528 + L1M4 LINE L1 5188 5316 -1017 2 791 281 26 26 0 chr3 27111166 27111204 -132488579 + (TCTA)n Simple_repeat Simple_repeat 2 40 0 2 791 807 152 7 55 chr3 27111215 27111361 -132488422 - B1_Mus1 SINE Alu -1 147 9 2 791 189 0 0 0 chr3 27111368 27111389 -132488394 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 2 791 915 207 53 0 chr3 27111389 27111558 -132488225 - ID_B1 SINE B4 -35 189 12 2 791 641 211 37 22 chr3 27112900 27113036 -132486747 - B1_Mur2 SINE Alu 0 149 12 2 791 1337 133 5 45 chr3 27113041 27113261 -132486522 - URR1B DNA MER1_type 0 225 15 2 791 1000 259 80 72 chr3 27113306 27113680 -132486103 - MTEa LTR MaLR -2 377 1 2 791 261 244 145 12 chr3 27113978 27114041 -132485742 + PB1D10 SINE Alu 13 86 -31 2 791 501 263 41 25 chr3 27114041 27114162 -132485621 + RSINE1 SINE B4 2 124 -41 2 791 1612 177 196 8 chr3 27114162 27114515 -132485268 - MTC LTR MaLR 0 421 3 2 791 414 0 0 0 chr3 27114639 27114685 -132485098 + (CA)n Simple_repeat Simple_repeat 2 47 0 2 791 947 55 8 31 chr3 27114764 27114894 -132484889 + B1_Mur4 SINE Alu 14 140 -10 2 791 363 214 229 75 chr3 27114941 27114996 -132484787 + ID_B1 SINE B4 47 223 -69 2 791 607 176 20 0 chr3 27114996 27115098 -132484685 + PB1D10 SINE Alu 13 116 -1 2 791 574 280 128 15 chr3 27115105 27115301 -132484482 + ID_B1 SINE B4 5 222 -2 2 791 2669 220 104 39 chr3 27115358 27116081 -132483702 + RMER13A LTR ERVK 14 783 -77 2 791 225 196 0 0 chr3 27116572 27116618 -132483165 + (TCCA)n Simple_repeat Simple_repeat 3 48 0 2 791 252 0 0 0 chr3 27117054 27117082 -132482701 + (TCTG)n Simple_repeat Simple_repeat 3 30 0 2 791 215 295 88 25 chr3 27117125 27117205 -132482578 - PB1D10 SINE Alu 0 117 33 2 791 1236 123 16 21 chr3 27117274 27117465 -132482318 + B2_Mm2 SINE B2 1 190 -5 2 791 646 161 8 17 chr3 27117884 27118004 -132481779 + B1_Mur2 SINE Alu 21 139 -10 2 791 1507 74 16 0 chr3 27118166 27118356 -132481427 - B2_Mm2 SINE B2 -1 194 2 2 791 811 230 52 16 chr3 27118423 27118617 -132481166 - ID_B1 SINE B4 -8 216 16 2 791 238 222 56 0 chr3 27118671 27118725 -132481058 - B1F SINE Alu -2 147 91 2 791 616 265 27 7 chr3 27119289 27119437 -132480346 - RSINE1 SINE B4 -12 153 3 2 791 225 0 0 0 chr3 27120035 27120060 -132479723 + (T)n Simple_repeat Simple_repeat 1 25 0 2 791 435 256 70 35 chr3 27120205 27120347 -132479436 - B1F SINE Alu 0 149 3 2 791 239 100 240 0 chr3 27120677 27120727 -132479056 + B1F1 SINE Alu 83 144 -5 2 791 432 0 0 0 chr3 27120727 27120775 -132479008 + (GA)n Simple_repeat Simple_repeat 2 49 0 2 791 408 200 0 91 chr3 27120803 27120891 -132478892 + ID4 SINE ID 2 81 -2 2 791 208 308 0 13 chr3 27120939 27121018 -132478765 + G-rich Low_complexity Low_complexity 6 83 0 2 791 707 182 0 43 chr3 27121188 27121326 -132478457 + B1_Mur1 SINE Alu 1 132 -17 2 791 342 61 0 0 chr3 27121355 27121404 -132478379 + (TCTG)n Simple_repeat Simple_repeat 2 50 0 2 791 339 150 0 0 chr3 27121404 27121464 -132478319 + (CA)n Simple_repeat Simple_repeat 1 60 0 2 791 243 231 0 0 chr3 27121970 27122022 -132477761 + CT-rich Low_complexity Low_complexity 1 52 0 2 791 228 372 0 0 chr3 27122024 27122102 -132477681 - ID2 SINE ID -4 79 2 2 791 530 287 25 0 chr3 27122652 27122809 -132476974 + RSINE1 SINE B4 4 164 -1 2 791 465 232 137 27 chr3 27123072 27123119 -132476664 - MTEa LTR MaLR 0 379 326 2 791 1186 80 0 11 chr3 27123119 27123297 -132476486 + (GGAA)n Simple_repeat Simple_repeat 3 178 0 2 791 516 16 0 0 chr3 27123297 27123358 -132476425 + (CAGG)n Simple_repeat Simple_repeat 1 61 0 2 791 465 232 137 27 chr3 27123358 27123455 -132476328 - MTEa LTR MaLR -54 325 221 2 791 233 57 0 28 chr3 27123456 27123492 -132476291 + (TTG)n Simple_repeat Simple_repeat 2 36 0 2 791 472 304 95 0 chr3 27123493 27123651 -132476132 - MTEa LTR MaLR -206 173 1 2 791 209 242 91 0 chr3 27123661 27123727 -132476056 - L2c LINE L2 -38 3349 3278 2 791 969 238 44 0 chr3 27123982 27124188 -132475595 - ID_B1 SINE B4 -1 223 9 2 791 213 226 0 0 chr3 27124668 27124721 -132475062 + C-rich Low_complexity Low_complexity 2 54 0 2 791 220 295 162 0 chr3 27124753 27124858 -132474925 - ID_B1 SINE B4 -8 216 95 2 791 786 247 20 25 chr3 27125102 27125301 -132474482 - B3A SINE B2 0 198 1 2 791 24 0 0 0 chr3 27125426 27125450 -132474333 + AT_rich Low_complexity Low_complexity 1 24 0 2 791 1133 82 7 7 chr3 27125450 27125597 -132474186 - B1_Mus2 SINE Alu 0 147 1 2 791 345 264 14 0 chr3 27125674 27125746 -132474037 - ID4 SINE ID -6 77 5 3 791 180 373 144 10 chr3 27126044 27126239 -132473544 + L2a LINE L2 3200 3420 -6 3 791 578 239 28 50 chr3 27126304 27126433 -132473350 + B1F SINE Alu 10 139 -10 3 791 213 39 0 0 chr3 27126433 27126459 -132473324 + (CAA)n Simple_repeat Simple_repeat 2 27 0 3 791 578 239 28 50 chr3 27126459 27126470 -132473313 + B1F SINE Alu 140 147 -2 3 791 905 253 62 147 chr3 27126475 27126781 -132473002 + B4A SINE B4 7 286 -6 3 791 185 336 44 66 chr3 27126821 27126958 -132472825 - MIR SINE MIR -59 203 70 3 791 236 262 692 35 chr3 27128248 27128365 -132471418 - RMER30 DNA MER1_type -2 200 7 3 791 649 220 109 52 chr3 27128857 27129068 -132470715 + ID_B1 SINE B4 1 223 -1 3 791 569 127 7 106 chr3 27129789 27129930 -132469853 - MT2A LTR ERVL -2 531 405 3 791 543 31 0 0 chr3 27130490 27130555 -132469228 + (CA)n Simple_repeat Simple_repeat 1 65 0 3 791 797 303 51 7 chr3 27130938 27131214 -132468569 + B4 SINE B4 5 292 0 3 791 303 271 0 28 chr3 27131518 27131590 -132468193 - BC1_Mm scRNA scRNA -68 84 15 3 98 402 291 7 47 chr3 27131818 27131966 -132467817 - B4 SINE B4 -140 152 11 3 792 329 279 35 43 chr3 27131979 27132095 -132467688 - PB1D7 SINE Alu -5 115 1 3 792 270 73 0 0 chr3 27132353 27132394 -132467389 + (CAA)n Simple_repeat Simple_repeat 2 42 0 3 792 1094 208 19 5 chr3 27132401 27132609 -132467174 - ID_B1 SINE B4 -13 211 1 3 792 271 262 88 0 chr3 27133205 27133285 -132466498 + ID_B1 SINE B4 133 219 -5 3 792 296 290 47 24 chr3 27133768 27133895 -132465888 - B1F1 SINE Alu -3 146 17 3 792 498 278 0 0 chr3 27134153 27134268 -132465515 - ID_B1 SINE B4 -24 200 86 3 792 330 26 0 0 chr3 27134422 27134461 -132465322 + (TC)n Simple_repeat Simple_repeat 1 39 0 3 792 327 25 0 0 chr3 27134461 27134500 -132465283 + (CA)n Simple_repeat Simple_repeat 1 40 0 3 792 243 234 0 0 chr3 27134610 27134657 -132465126 - tRNA-Ala-GCA tRNA tRNA -24 51 5 3 792 211 197 14 129 chr3 27134673 27134743 -132465040 - PB1 SINE Alu 0 127 66 3 792 1384 72 5 58 chr3 27134993 27135198 -132464585 - B2_Mm2 SINE B2 0 195 2 3 792 329 260 20 50 chr3 27135239 27135254 -132464529 + B4 SINE B4 72 83 -209 3 792 463 271 23 76 chr3 27135254 27135386 -132464397 + PB1D9 SINE Alu 2 126 -23 3 792 247 298 96 8 chr3 27135473 27135598 -132464185 - B1F1 SINE Alu -13 136 1 3 792 1391 128 145 24 chr3 27135878 27136192 -132463591 + MTC LTR MaLR 3 411 -8 3 792 346 237 70 78 chr3 27136416 27136544 -132463239 - B1F SINE Alu 0 149 23 3 792 2574 178 34 20 chr3 27137268 27137767 -132462016 + RLTR18B LTR ERVK 4 509 -3 3 792 1234 270 45 19 chr3 27137842 27138201 -132461582 - MTD LTR MaLR 0 419 52 3 792 25 31 0 0 chr3 27138313 27138345 -132461438 + AT_rich Low_complexity Low_complexity 1 32 0 3 792 231 61 0 0 chr3 27139004 27139037 -132460746 + (TTTTG)n Simple_repeat Simple_repeat 3 35 0 3 792 585 261 7 22 chr3 27139038 27139175 -132460608 - ID_B1 SINE B4 -9 215 81 3 792 393 284 8 33 chr3 27139186 27139306 -132460477 - PB1D10 SINE Alu 0 117 1 3 792 261 0 0 0 chr3 27140792 27140821 -132458962 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 3 792 24 53 0 0 chr3 27141731 27141769 -132458014 + AT_rich Low_complexity Low_complexity 1 38 0 3 792 207 0 0 0 chr3 27142749 27142772 -132457011 + (TG)n Simple_repeat Simple_repeat 1 23 0 3 792 245 278 42 0 chr3 27143160 27143232 -132456551 - ID SINE ID -149 75 1 3 792 548 176 41 4 chr3 27144237 27144353 -132455430 - ORR1C2 LTR MaLR 0 394 265 3 792 4717 224 69 74 chr3 27144358 27145856 -132453927 - ORR1C2-int LTR MaLR 0 1509 19 3 792 1587 193 104 3 chr3 27145859 27146034 -132453749 - ORR1C2 LTR MaLR -12 372 191 3 792 259 42 0 78 chr3 27146034 27146085 -132453698 + (CAGAGA)n Simple_repeat Simple_repeat 4 50 0 3 792 1587 193 104 3 chr3 27146085 27146237 -132453546 - ORR1C2 LTR MaLR -194 190 12 3 792 1900 133 159 3 chr3 27146297 27146503 -132453280 + ORR1B1 LTR MaLR 1 260 -134 3 792 303 49 0 0 chr3 27146503 27146544 -132453239 + (CCTG)n Simple_repeat Simple_repeat 4 44 0 3 792 1900 133 159 3 chr3 27146544 27146677 -132453106 + ORR1B1 LTR MaLR 261 393 -1 3 792 723 258 14 32 chr3 27146904 27147124 -132452659 + ID_B1 SINE B4 5 220 -4 3 792 244 269 45 0 chr3 27147258 27147325 -132452458 - ID4 SINE ID -11 72 3 3 792 1483 72 0 25 chr3 27147367 27147566 -132452217 - B2_Mm2 SINE B2 0 195 2 3 792 597 263 57 6 chr3 27147606 27147763 -132452020 - RSINE1 SINE B4 0 165 1 3 792 642 219 7 40 chr3 27148294 27148446 -132451337 - ID_B1 SINE B4 -2 222 76 3 792 21 0 0 0 chr3 27148457 27148478 -132451305 + AT_rich Low_complexity Low_complexity 1 21 0 3 792 23 0 0 0 chr3 27148697 27148720 -132451063 + AT_rich Low_complexity Low_complexity 1 23 0 3 792 899 142 0 41 chr3 27149113 27149260 -132450523 + B1_Mur2 SINE Alu 5 145 -4 3 792 280 321 25 0 chr3 27149258 27149339 -132450444 - RSINE1 SINE B4 -81 84 2 3 792 258 317 113 47 chr3 27149434 27149540 -132450243 - ID_B1 SINE B4 -62 162 50 3 792 223 312 105 87 chr3 27149718 27149737 -132450046 - B4A SINE B4 -39 253 83 3 792 427 315 20 20 chr3 27149737 27149886 -132449897 - B1F SINE Alu 0 149 1 3 792 204 67 0 0 chr3 27149945 27149975 -132449808 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 3 792 321 26 0 0 chr3 27149992 27150030 -132449753 + (TAAAAA)n Simple_repeat Simple_repeat 6 43 0 3 792 394 211 27 63 chr3 27150825 27150936 -132448847 - B3 SINE B2 -109 107 1 3 792 1117 14 14 0 chr3 27150949 27151088 -132448695 + (TTTC)n Simple_repeat Simple_repeat 2 142 0 3 792 883 70 147 0 chr3 27151104 27151233 -132448550 - B1_Mus1 SINE Alu 0 148 1 3 792 246 326 31 31 chr3 27151237 27151335 -132448448 - MER5A1 DNA MER1_type 0 166 69 3 792 582 276 98 25 chr3 27151699 27151903 -132447880 + ID_B1 SINE B4 3 221 -3 3 792 4332 95 0 30 chr3 27152259 27152864 -132446919 - LTRIS_Mus LTR ERV1 0 587 1 3 792 605 77 99 0 chr3 27152864 27152955 -132446828 - MuRRS-int LTR ERV1 0 4690 4591 3 792 4618 122 9 23 chr3 27152976 27153664 -132446119 - MuRRS-int LTR ERV1 -73 4617 3940 3 792 12526 56 11 0 chr3 27153664 27155949 -132443834 - L1Md_F2 LINE L1 0 6582 4291 3 792 3339 163 22 8 chr3 27155949 27156842 -132442941 - MuRRS-int LTR ERV1 -1021 3669 2176 3 792 5126 154 36 139 chr3 27156830 27158094 -132441689 - MuRRS-int LTR ERV1 -2838 1852 719 3 792 607 92 9 9 chr3 27158094 27158204 -132441579 + (CA)n Simple_repeat Simple_repeat 2 111 0 3 792 1962 142 38 22 chr3 27158204 27158576 -132441207 - MuRRS-int LTR ERV1 -4684 379 3 3 792 4400 88 7 28 chr3 27158577 27159177 -132440606 - LTRIS_Mus LTR ERV1 0 587 1 3 792 369 0 0 0 chr3 27159360 27159401 -132440382 + (TG)n Simple_repeat Simple_repeat 2 42 0 3 792 374 293 0 39 chr3 27159401 27159504 -132440279 - RSINE1 SINE B4 -41 124 26 3 792 985 236 154 69 chr3 27159621 27159639 -132440144 + MTD LTR MaLR 3 21 -398 3 792 360 43 0 0 chr3 27159639 27159685 -132440098 + (TG)n Simple_repeat Simple_repeat 2 47 0 3 792 985 236 154 69 chr3 27159685 27159782 -132440001 + MTD LTR MaLR 22 120 -299 3 792 1256 34 7 0 chr3 27159782 27159928 -132439855 - B1_Mus1 SINE Alu -1 147 1 3 792 985 236 154 69 chr3 27159928 27160130 -132439653 + MTD LTR MaLR 121 347 -72 3 792 1150 274 49 12 chr3 27160120 27160449 -132439334 + MTEa LTR MaLR 6 346 -33 3 792 357 264 152 23 chr3 27161150 27161163 -132438620 + B1F2 SINE Alu 1 144 0 3 792 415 281 97 0 chr3 27161163 27161277 -132438506 + ID_B1 SINE B4 98 222 -2 3 792 24 67 0 0 chr3 27161592 27161637 -132438146 + AT_rich Low_complexity Low_complexity 1 45 0 3 792 226 308 117 32 chr3 27161637 27161731 -132438052 - B3 SINE B2 -3 213 112 3 792 520 88 37 3 chr3 27161732 27161811 -132437972 - ORR1B2 LTR MaLR 0 421 296 3 792 5890 174 59 9 chr3 27161820 27162932 -132436851 - Lx5 LINE L1 0 7050 5883 3 792 1074 186 96 43 chr3 27162940 27163285 -132436498 + RLTR26 LTR ERVK 5 403 -239 3 792 644 270 68 53 chr3 27163478 27163685 -132436098 - B3 SINE B2 -1 215 6 3 792 366 167 102 45 chr3 27163683 27163771 -132436012 + PB1D9 SINE Alu 18 110 -10 3 792 313 237 26 26 chr3 27164230 27164308 -132435475 - ID SINE ID -143 81 4 3 792 536 292 99 6 chr3 27164545 27164717 -132435066 - Tigger7 DNA MER2_type -2 2489 2302 3 792 275 154 58 0 chr3 27164744 27164796 -132434987 - B4A SINE B4 -21 271 217 3 792 304 265 76 65 chr3 27164788 27164827 -132434956 - B3A SINE B2 -1 215 176 3 792 315 0 0 0 chr3 27164827 27164862 -132434921 + (TG)n Simple_repeat Simple_repeat 2 36 0 3 792 304 264 69 67 chr3 27164862 27164972 -132434811 - B3A SINE B2 -39 177 38 3 792 563 322 0 12 chr3 27165923 27166096 -132433687 - B3A SINE B2 -13 185 15 3 792 191 388 0 0 chr3 27166257 27166342 -132433441 - MIRb SINE MIR -128 140 56 3 792 315 0 0 0 chr3 27166587 27166622 -132433161 + (TCTG)n Simple_repeat Simple_repeat 4 38 0 3 792 372 94 0 19 chr3 27167175 27167229 -132432554 - ORR1C1 LTR MaLR -22 356 304 3 792 795 121 12 25 chr3 27167187 27167374 -132432409 + B2_Mm2 SINE B2 24 203 -13 3 792 1804 153 36 52 chr3 27167398 27167744 -132432039 - ORR1B2 LTR MaLR -24 355 1 3 792 434 331 202 20 chr3 27167744 27168046 -132431737 - RMER15-int LTR ERVL -338 4661 4305 3 792 229 164 9 42 chr3 27168403 27168458 -132431325 + B3A SINE B2 2 57 -159 3 792 200 143 24 0 chr3 27168463 27168505 -132431278 + (CA)n Simple_repeat Simple_repeat 1 43 0 3 792 640 205 0 12 chr3 27168521 27168694 -132431089 + (TA)n Simple_repeat Simple_repeat 2 172 0 3 792 332 309 0 0 chr3 27168890 27168971 -132430812 + ID_B1 SINE B4 133 213 -11 3 792 3099 139 31 6 chr3 27169914 27170429 -132429354 - RLTR11A LTR ERVK 0 528 1 3 792 303 96 0 0 chr3 27170480 27170532 -132429251 + (CAGA)n Simple_repeat Simple_repeat 4 55 0 3 792 305 224 124 22 chr3 27170641 27170730 -132429053 - PB1D10 SINE Alu 0 127 19 3 792 5035 58 0 2 chr3 27170758 27171531 -132428252 + L1Md_F2 LINE L1 5439 6210 -372 3 792 219 254 0 0 chr3 27171552 27171615 -132428168 + (TA)n Simple_repeat Simple_repeat 1 63 0 4 792 3141 179 94 97 chr3 27172076 27172874 -132426909 - RLTR40 LTR ERVK -21 796 1 4 792 363 282 39 12 chr3 27172953 27173075 -132426708 + ID_B1 SINE B4 2 126 -166 4 792 416 247 0 0 chr3 27173139 27173216 -132426567 - B1F1 SINE Alu -72 77 1 4 792 538 214 107 0 chr3 27173314 27173426 -132426357 + RSINE1 SINE B4 2 125 -40 4 792 223 312 52 78 chr3 27173426 27173505 -132426278 + B2_Mm1a SINE B2 1 186 -7 4 792 551 173 0 9 chr3 27173510 27173621 -132426162 + CT-rich Low_complexity Low_complexity 3 112 0 4 792 225 204 23 0 chr3 27174295 27174339 -132425444 + CT-rich Low_complexity Low_complexity 2 46 0 4 792 2061 200 22 0 chr3 27174380 27174740 -132425043 - ORR1D1 LTR MaLR 0 374 7 4 792 1313 58 69 0 chr3 27174811 27174984 -132424799 - B2_Mm2 SINE B2 -9 186 2 4 792 305 275 62 103 chr3 27175412 27175558 -132424225 - MTE2a LTR MaLR -239 140 1 4 792 257 252 113 104 chr3 27175789 27175904 -132423879 - PB1 SINE Alu -2 125 10 4 792 442 262 19 0 chr3 27176663 27176766 -132423017 + ID_B1 SINE B4 2 106 -118 4 792 446 222 160 17 chr3 27177656 27177775 -132422008 + B1_Mur1 SINE Alu 1 136 -13 4 792 594 41 0 0 chr3 27178035 27178108 -132421675 + (TTTTG)n Simple_repeat Simple_repeat 2 74 0 4 792 392 317 0 9 chr3 27178124 27178229 -132421554 - ID_B1 SINE B4 -39 185 82 4 792 1917 113 12 59 chr3 27179022 27179360 -132420423 - RLTRETN_Mm LTR ERVK 0 322 1 4 792 617 217 59 94 chr3 27179689 27179892 -132419891 + B3A SINE B2 1 196 -2 4 792 225 0 0 0 chr3 27179947 27179972 -132419811 + (CAAAA)n Simple_repeat Simple_repeat 3 27 0 4 792 417 39 0 0 chr3 27180702 27180753 -132419030 + (TC)n Simple_repeat Simple_repeat 1 51 0 4 792 502 287 85 70 chr3 27180804 27181074 -132418709 - B4 SINE B4 -18 274 1 4 792 1014 231 0 0 chr3 27181111 27181293 -132418490 - B3 SINE B2 -34 182 1 4 792 636 296 42 14 chr3 27181317 27181533 -132418250 - ID_B1 SINE B4 -1 223 2 4 792 390 300 0 0 chr3 27182661 27182751 -132417032 + B4A SINE B4 125 214 -78 4 792 297 0 0 0 chr3 27182821 27182854 -132416929 + (TG)n Simple_repeat Simple_repeat 2 34 0 4 792 202 95 0 45 chr3 27183152 27183196 -132416587 + (TTTTG)n Simple_repeat Simple_repeat 2 43 0 4 792 28 0 0 0 chr3 27183247 27183275 -132416508 + AT_rich Low_complexity Low_complexity 1 28 0 4 792 533 232 139 6 chr3 27183280 27183453 -132416330 - B3A SINE B2 0 198 3 4 792 789 179 67 0 chr3 27183603 27183737 -132416046 - B1_Mur3 SINE Alu -1 148 6 4 792 192 97 0 0 chr3 27183829 27183860 -132415923 + (TG)n Simple_repeat Simple_repeat 2 32 0 4 792 254 241 135 28 chr3 27184371 27184512 -132415271 + L1MA4 LINE L1 5770 5925 -375 4 792 483 18 0 0 chr3 27184538 27184594 -132415189 + (GA)n Simple_repeat Simple_repeat 2 57 0 4 792 234 167 0 0 chr3 27184684 27184744 -132415039 + CT-rich Low_complexity Low_complexity 2 61 0 4 792 373 355 40 0 chr3 27184817 27185151 -132414632 + C-rich Low_complexity Low_complexity 1 347 0 4 792 591 257 83 11 chr3 27185950 27186131 -132413652 + B3A SINE B2 2 195 -3 4 792 21 57 0 0 chr3 27186199 27186234 -132413549 + AT_rich Low_complexity Low_complexity 1 35 0 4 792 350 263 297 19 chr3 27186683 27186838 -132412945 - B3A SINE B2 0 198 1 4 792 684 0 0 0 chr3 27186972 27187048 -132412735 + (TTCTC)n Simple_repeat Simple_repeat 3 78 0 4 792 1336 45 11 0 chr3 27187053 27187229 -132412554 + (TCC)n Simple_repeat Simple_repeat 3 180 0 4 792 495 132 0 0 chr3 27187247 27187338 -132412445 + (TC)n Simple_repeat Simple_repeat 2 92 0 4 792 533 275 8 8 chr3 27187341 27187462 -132412321 - RSINE1 SINE B4 -44 121 1 4 792 360 218 19 5 chr3 27188276 27188362 -132411421 - ID4_ SINE ID -51 101 15 4 792 289 217 0 62 chr3 27188310 27188374 -132411409 - ID SINE ID -157 67 8 4 792 771 201 14 0 chr3 27188389 27188533 -132411250 - B1_Mur1 SINE Alu -3 146 1 4 792 440 284 88 88 chr3 27188851 27189223 -132410560 + ORR1E LTR MaLR 1 362 -8 4 792 390 308 37 15 chr3 27189313 27189448 -132410335 - B1F SINE Alu -11 138 1 4 792 359 349 70 48 chr3 27189471 27189742 -132410041 - LTR82A LTR ERVL -339 533 257 4 792 204 67 0 0 chr3 27189759 27189789 -132409994 + (CAAAA)n Simple_repeat Simple_repeat 1 30 0 4 792 1234 41 0 13 chr3 27189798 27189947 -132409836 + B1_Mus1 SINE Alu 1 147 -1 4 792 729 106 0 9 chr3 27190017 27190131 -132409652 - ORR1B1 LTR MaLR -186 208 96 4 792 2240 112 66 71 chr3 27190404 27190798 -132408985 + ORR1B1 LTR MaLR 3 394 0 4 792 342 246 0 0 chr3 27190807 27190876 -132408907 - Lx8 LINE L1 -161 7312 7244 4 792 752 106 55 12 chr3 27190984 27191147 -132408636 + CT-rich Low_complexity Low_complexity 4 173 0 4 792 225 132 0 0 chr3 27191148 27191186 -132408597 + (CA)n Simple_repeat Simple_repeat 2 39 0 4 792 344 252 178 20 chr3 27191188 27191328 -132408455 + ID_B1 SINE B4 72 213 -11 4 792 295 246 0 0 chr3 27191522 27191583 -132408200 - ID4_ SINE ID -18 65 5 4 792 316 240 80 0 chr3 27191599 27191674 -132408109 - B1F SINE Alu -22 127 47 4 792 429 20 0 0 chr3 27192916 27192966 -132406817 + (TG)n Simple_repeat Simple_repeat 2 51 0 4 792 470 311 37 5 chr3 27193327 27193518 -132406265 - L1M5 LINE L1 -362 5762 5566 4 792 3476 118 19 4 chr3 27194495 27195023 -132404760 + Lx2A1 LINE L1 6473 7008 0 4 792 675 276 146 12 chr3 27195216 27195469 -132404314 - B4 SINE B4 0 292 6 4 792 410 268 146 43 chr3 27195721 27195885 -132403898 - B3A SINE B2 -17 181 1 4 792 219 257 0 0 chr3 27196257 27196331 -132403452 + GA-rich Low_complexity Low_complexity 2 75 0 4 792 304 279 145 14 chr3 27196331 27196469 -132403314 + HAL1-3A_ME LINE L1 2284 2439 -419 4 792 427 167 133 0 chr3 27197105 27197195 -132402588 + PB1D7 SINE Alu 13 114 -6 4 792 372 241 49 7 chr3 27197408 27197504 -132402279 - MTE2a LTR MaLR -319 102 1 4 792 243 261 0 80 chr3 27197504 27197559 -132402224 + ID_B1 SINE B4 160 211 -13 4 792 1202 62 7 0 chr3 27197559 27197705 -132402078 + B1_Mus2 SINE Alu 1 147 0 4 792 243 261 0 80 chr3 27197705 27197718 -132402065 + ID_B1 SINE B4 212 222 -2 4 792 212 77 26 0 chr3 27197720 27197759 -132402024 + (CAAAAA)n Simple_repeat Simple_repeat 2 41 0 4 792 180 0 0 0 chr3 27197777 27197797 -132401986 + (A)n Simple_repeat Simple_repeat 1 20 0 4 792 295 325 0 0 chr3 27198329 27198406 -132401377 + polypyrimidine Low_complexity Low_complexity 3 79 0 4 792 294 316 50 10 chr3 27198469 27198568 -132401215 + MTE2a LTR MaLR 19 121 -258 4 792 920 163 0 6 chr3 27198973 27199146 -132400637 + CT-rich Low_complexity Low_complexity 3 174 0 4 792 418 303 112 60 chr3 27199308 27199557 -132400226 - ORSL DNA Tip100 -13 262 1 4 792 230 353 16 40 chr3 27199591 27199715 -132400068 - MIRb SINE MIR -36 232 112 4 792 356 206 68 0 chr3 27199992 27200065 -132399718 - ID4_ SINE ID -1 82 5 4 792 180 0 0 0 chr3 27200127 27200147 -132399636 + (TTCC)n Simple_repeat Simple_repeat 1 20 0 4 792 862 157 13 16 chr3 27200147 27200381 -132399402 + CT-rich Low_complexity Low_complexity 1 233 0 4 792 1047 112 11 11 chr3 27200381 27200561 -132399222 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 4 792 239 227 0 15 chr3 27200561 27200573 -132399210 + polypyrimidine Low_complexity Low_complexity 4 15 0 4 792 815 153 11 22 chr3 27200573 27200753 -132399030 + CT-rich Low_complexity Low_complexity 3 180 0 4 792 359 39 39 0 chr3 27200758 27200810 -132398973 + (TAGA)n Simple_repeat Simple_repeat 4 57 0 4 792 769 261 13 132 chr3 27200817 27201051 -132398732 - ID_B1 SINE B4 -17 207 2 4 792 936 175 215 0 chr3 27202030 27202207 -132397576 - B3 SINE B2 -1 215 1 4 792 624 310 47 84 chr3 27203003 27203034 -132396749 - B4A SINE B4 0 292 265 4 792 315 0 0 0 chr3 27203034 27203069 -132396714 + (TG)n Simple_repeat Simple_repeat 2 36 0 4 792 624 310 47 84 chr3 27203069 27203231 -132396552 - B4A SINE B4 -28 264 107 4 792 3181 40 42 0 chr3 27203231 27203611 -132396172 - MTA_Mm LTR MaLR 0 396 1 4 792 8053 74 25 2 chr3 27203611 27204684 -132395099 - MTA_Mm-int LTR MaLR 0 1098 1 4 792 3323 33 15 15 chr3 27204684 27205080 -132394703 - MTA_Mm LTR MaLR 0 396 1 4 792 624 310 47 84 chr3 27205080 27205179 -132394604 - B4A SINE B4 -186 106 11 4 792 988 315 67 11 chr3 27205308 27205831 -132393952 - L1M2 LINE L1 -4329 2520 1969 4 792 3339 46 2 2 chr3 27207712 27208108 -132391675 - MTA_Mm LTR MaLR 0 396 1 4 792 9170 39 8 0 chr3 27208108 27209197 -132390586 - MTA_Mm-int LTR MaLR 0 1098 1 4 792 3447 25 5 2 chr3 27209197 27209592 -132390191 - MTA_Mm LTR MaLR 0 396 1 4 792 233 250 188 43 chr3 27210906 27211023 -132388760 + Tigger13a DNA MER2_type 219 352 -419 4 792 369 300 0 0 chr3 27211073 27211163 -132388620 + PB1D10 SINE Alu 21 110 -7 4 792 338 333 186 0 chr3 27211175 27211385 -132388398 - B4A SINE B4 -43 249 1 4 792 354 295 79 70 chr3 27211833 27212048 -132387735 + LTR82A LTR ERVL 95 311 -561 4 792 7829 85 13 6 chr3 27212057 27213115 -132386668 + Lx LINE L1 5588 6653 -1 4 792 247 279 29 0 chr3 27213215 27213283 -132386500 - MER58D DNA MER1_type -2 384 315 4 792 1466 272 102 20 chr3 27213410 27213902 -132385881 + Lx8 LINE L1 6870 7401 -72 4 792 1121 259 176 22 chr3 27213936 27214295 -132385488 - MTD LTR MaLR 0 419 6 4 792 483 237 109 22 chr3 27214516 27214586 -132385197 + B4A SINE B4 1 82 -210 4 792 233 289 103 28 chr3 27214586 27214693 -132385090 + PB1D7 SINE Alu 1 115 -5 4 792 1276 155 259 108 chr3 27215012 27215410 -132384373 + RMER6B LTR ERVK 1 458 -3 4 792 252 0 0 0 chr3 27215418 27215446 -132384337 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 5 792 1841 150 124 46 chr3 27215454 27215866 -132383917 - RMER1A Other Other -30 1000 557 5 792 306 0 0 0 chr3 27216529 27216563 -132383220 + (TG)n Simple_repeat Simple_repeat 2 35 0 5 792 635 216 6 0 chr3 27216564 27216731 -132383052 + GA-rich Low_complexity Low_complexity 2 169 0 5 792 274 248 61 79 chr3 27216746 27216816 -132382967 - B4A SINE B4 -18 274 204 5 792 3298 24 39 0 chr3 27216816 27217197 -132382586 + MTA_Mm LTR MaLR 1 396 0 5 792 9585 25 1 1 chr3 27217197 27218295 -132381488 + MTA_Mm-int LTR MaLR 1 1098 0 5 792 3298 24 39 0 chr3 27218295 27218676 -132381107 + MTA_Mm LTR MaLR 1 396 0 5 792 274 248 61 79 chr3 27218676 27218717 -132381066 - B4A SINE B4 -89 203 165 5 792 333 299 109 20 chr3 27218733 27218880 -132380903 - Lx8 LINE L1 -478 6995 6836 5 792 975 166 268 48 chr3 27219029 27219174 -132380609 - RMER17C LTR ERVK 0 410 217 5 792 1203 47 0 0 chr3 27219174 27219324 -132380459 + (GGGAGA)n Simple_repeat Simple_repeat 6 155 0 5 792 975 166 268 48 chr3 27219324 27219514 -132380269 - RMER17C LTR ERVK -194 216 1 5 792 560 310 118 16 chr3 27219587 27219774 -132380009 + B4A SINE B4 6 211 -81 5 792 351 0 0 0 chr3 27219779 27219818 -132379965 + (CA)n Simple_repeat Simple_repeat 1 39 0 5 792 302 288 15 0 chr3 27220582 27220648 -132379135 - B4 SINE B4 -11 281 215 5 792 270 210 5 21 chr3 27220660 27220736 -132379047 - B4 SINE B4 -44 248 176 5 792 425 171 11 0 chr3 27220799 27220887 -132378896 + CT-rich Low_complexity Low_complexity 2 90 0 5 792 546 186 16 48 chr3 27220896 27221020 -132378763 - PB1D9 SINE Alu 0 120 1 5 792 441 274 17 103 chr3 27221020 27221107 -132378676 - B4 SINE B4 -211 81 10 5 792 475 311 18 12 chr3 27221161 27221324 -132378459 - RSINE1 SINE B4 0 165 2 5 792 208 169 16 48 chr3 27222198 27222260 -132377523 + T-rich Low_complexity Low_complexity 3 62 0 5 792 587 54 33 67 chr3 27222261 27222377 -132377406 - B1_Mus2 SINE Alu -1 126 1 5 792 298 216 0 162 chr3 27222288 27222393 -132377390 - MT2B LTR ERVL -361 240 153 5 792 533 293 39 14 chr3 27223058 27223266 -132376517 + ID_B1 SINE B4 1 213 -11 5 792 342 91 0 0 chr3 27223269 27223324 -132376459 + (CTCA)n Simple_repeat Simple_repeat 1 55 0 5 792 324 250 0 0 chr3 27223426 27223506 -132376277 + PB1D9 SINE Alu 2 81 -39 5 792 306 236 27 14 chr3 27223558 27223631 -132376152 - ID4_ SINE ID -8 75 2 5 792 364 286 0 32 chr3 27223649 27223772 -132376011 - ID_B1 SINE B4 -3 221 103 5 792 335 292 42 49 chr3 27223772 27223788 -132375995 - B1F1 SINE Alu 0 144 7 5 792 191 30 0 108 chr3 27223842 27223857 -132375926 + (A)n Simple_repeat Simple_repeat 1 12 0 5 792 1251 48 0 0 chr3 27223857 27224004 -132375779 + B1_Mm SINE Alu 1 147 0 5 792 191 30 0 108 chr3 27224004 27224025 -132375758 + (A)n Simple_repeat Simple_repeat 1 21 0 5 792 3408 33 2 2 chr3 27226009 27226405 -132373378 - MTA_Mm LTR MaLR 0 396 1 5 792 190 186 33 33 chr3 27226977 27227038 -132372745 + CT-rich Low_complexity Low_complexity 4 64 0 5 792 297 159 0 0 chr3 27227581 27227644 -132372139 + (CA)n Simple_repeat Simple_repeat 1 63 0 5 792 21 0 0 0 chr3 27228681 27228702 -132371081 + AT_rich Low_complexity Low_complexity 1 21 0 5 792 613 316 16 1 chr3 27228765 27229008 -132370775 + L1MA4 LINE L1 4581 4820 -1060 5 792 2032 97 36 0 chr3 27229009 27229317 -132370466 + ORR1A2 LTR MaLR 1 319 -8 5 792 477 278 185 67 chr3 27229317 27229596 -132370187 + L1MA4 LINE L1 4813 5166 -714 5 792 321 26 0 0 chr3 27229596 27229634 -132370149 + (CA)n Simple_repeat Simple_repeat 1 38 0 5 792 509 279 184 67 chr3 27229634 27230316 -132369467 + L1MA4 LINE L1 5167 5923 -368 5 792 306 0 0 0 chr3 27231196 27231230 -132368553 + (CA)n Simple_repeat Simple_repeat 2 35 0 5 792 250 239 179 6 chr3 27231230 27231386 -132368397 - L1M1 LINE L1 -675 5625 5443 5 792 491 294 80 72 chr3 27232494 27232743 -132367040 - B4A SINE B4 -1 291 41 5 792 349 198 12 0 chr3 27232742 27232823 -132366960 - B3 SINE B2 -100 116 35 5 792 496 191 7 33 chr3 27233557 27233709 -132366074 + CT-rich Low_complexity Low_complexity 1 148 0 5 792 396 0 0 0 chr3 27233868 27233912 -132365871 + (TG)n Simple_repeat Simple_repeat 1 44 0 5 792 225 308 0 0 chr3 27234945 27234997 -132364786 + Charlie12 DNA MER1_type 20 71 -2802 5 792 309 135 0 0 chr3 27235041 27235093 -132364690 + (TG)n Simple_repeat Simple_repeat 1 52 0 5 792 377 273 141 20 chr3 27235200 27235398 -132364385 + MTE-int LTR MaLR 1078 1299 -281 5 792 348 263 109 29 chr3 27235395 27235532 -132364251 - B1F SINE Alu -1 148 1 5 792 407 315 39 0 chr3 27235416 27235546 -132364237 - ID_B1 SINE B4 -23 201 67 5 792 667 241 111 11 chr3 27235913 27236102 -132363681 + B3 SINE B2 1 208 -8 5 792 210 320 13 0 chr3 27236457 27236535 -132363248 - ID4_ SINE ID -3 80 2 5 792 1458 73 11 0 chr3 27236663 27236854 -132362929 - B2_Mm1t SINE B2 0 193 1 5 792 369 221 23 23 chr3 27238114 27238202 -132361581 - B4A SINE B4 -203 89 2 5 792 543 16 0 0 chr3 27238699 27238763 -132361020 + (TG)n Simple_repeat Simple_repeat 1 64 0 5 792 837 245 167 39 chr3 27239007 27239343 -132360440 - MTE2a LTR MaLR 0 379 1 5 792 3619 168 89 0 chr3 27239365 27240008 -132359775 - RMER1B Other Other -1 1065 366 5 792 527 335 43 0 chr3 27241591 27241800 -132357983 - MTEb LTR MaLR -161 218 1 5 792 212 195 23 85 chr3 27242028 27242157 -132357626 + (TATAA)n Simple_repeat Simple_repeat 2 122 0 5 792 366 260 21 0 chr3 27242231 27242327 -132357456 - PB1D9 SINE Alu -9 111 14 5 792 252 237 78 13 chr3 27242448 27242525 -132357258 - RSINE1 SINE B4 -62 103 22 5 792 310 320 29 10 chr3 27242686 27242790 -132356993 - PB1D10 SINE Alu -10 107 2 5 792 248 315 81 40 chr3 27243797 27243946 -132355837 - MLT1L LTR MaLR -361 249 95 5 792 405 0 0 0 chr3 27245075 27245120 -132354663 + (CA)n Simple_repeat Simple_repeat 1 45 0 5 792 187 157 0 38 chr3 27245126 27245179 -132354604 + CT-rich Low_complexity Low_complexity 1 51 0 5 792 190 116 0 44 chr3 27245336 27245381 -132354402 + CT-rich Low_complexity Low_complexity 1 43 0 5 792 279 260 6 38 chr3 27245393 27245553 -132354230 + CT-rich Low_complexity Low_complexity 1 155 0 5 792 225 0 0 0 chr3 27246026 27246051 -132353732 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 5 792 1253 175 14 0 chr3 27246481 27246698 -132353085 + ID_B1 SINE B4 5 224 0 5 792 180 0 0 0 chr3 27247380 27247400 -132352383 + (TCTG)n Simple_repeat Simple_repeat 2 21 0 5 792 640 214 42 16 chr3 27247807 27247970 -132351813 + L1_Mm LINE L1 5290 5487 -696 5 792 400 229 12 0 chr3 27249010 27249093 -132350690 - PB1D10 SINE Alu -28 89 6 5 792 412 237 74 1 chr3 27249265 27249378 -132350405 - RSINE1 SINE B4 -172 120 1 5 792 450 0 0 0 chr3 27249604 27249654 -132350129 + (TG)n Simple_repeat Simple_repeat 2 51 0 5 792 214 262 72 36 chr3 27249657 27249740 -132350043 - RSINE1 SINE B4 -36 129 44 5 792 412 223 75 0 chr3 27249730 27249824 -132349959 - RSINE1 SINE B4 -63 102 2 5 792 182 333 38 68 chr3 27250542 27250674 -132349109 - L2 LINE L2 -793 2626 2499 5 792 409 333 106 73 chr3 27250913 27251253 -132348530 - MLT2F LTR ERVL -110 553 203 5 792 423 249 373 18 chr3 27251817 27251994 -132347789 + MLT1A LTR MaLR 133 372 -2 5 792 296 261 40 71 chr3 27252070 27252115 -132347668 + HAL1 LINE L1 1653 1698 -809 5 792 1981 174 90 10 chr3 27252115 27252505 -132347278 - MTC LTR MaLR 0 421 1 5 792 296 261 40 71 chr3 27252505 27252558 -132347225 + HAL1 LINE L1 1699 1748 -759 5 792 381 93 0 0 chr3 27252656 27252710 -132347073 + (TCTG)n Simple_repeat Simple_repeat 3 56 0 5 792 619 80 73 0 chr3 27252728 27252879 -132346904 + (TCTA)n Simple_repeat Simple_repeat 4 165 0 5 792 180 158 0 0 chr3 27252879 27252917 -132346866 + (TG)n Simple_repeat Simple_repeat 2 39 0 5 792 921 220 16 5 chr3 27253272 27253464 -132346319 - B3A SINE B2 -3 195 2 5 792 572 266 50 77 chr3 27253526 27253707 -132346076 + MTEa LTR MaLR 3 183 -196 5 792 3315 26 39 0 chr3 27253707 27254088 -132345695 + MTA_Mm LTR MaLR 1 396 0 5 792 9339 38 0 1 chr3 27254088 27255187 -132344596 + MTA_Mm-int LTR MaLR 1 1098 0 5 792 3364 11 42 0 chr3 27255187 27255567 -132344216 + MTA_Mm LTR MaLR 1 396 0 5 792 572 266 50 77 chr3 27255567 27255603 -132344180 + MTEa LTR MaLR 184 214 -165 5 792 480 324 38 64 chr3 27255602 27255866 -132343917 - B4A SINE B4 -33 259 3 5 792 365 309 32 37 chr3 27256610 27256798 -132342985 - RMER15 LTR ERVL -48 527 341 5 792 672 257 39 22 chr3 27257457 27257636 -132342147 + B3A SINE B2 1 182 -16 5 792 396 0 0 0 chr3 27257657 27257701 -132342082 + (TC)n Simple_repeat Simple_repeat 1 44 0 5 792 222 37 0 0 chr3 27257701 27257727 -132342056 + (CA)n Simple_repeat Simple_repeat 1 27 0 5 792 21 0 0 0 chr3 27257730 27257751 -132342032 + AT_rich Low_complexity Low_complexity 1 21 0 5 792 208 50 0 91 chr3 27257859 27257903 -132341880 + (TTTTG)n Simple_repeat Simple_repeat 1 40 0 5 792 732 327 0 5 chr3 27257950 27258162 -132341621 - B4 SINE B4 -77 215 5 5 792 357 380 39 30 chr3 27258256 27258489 -132341294 + L1M5 LINE L1 4838 5072 -1074 5 792 237 65 0 0 chr3 27258575 27258606 -132341177 + (A)n Simple_repeat Simple_repeat 1 31 0 5 792 358 333 27 5 chr3 27258688 27258911 -132340872 + L1MC LINE L1 5260 5487 -2395 5 792 519 299 135 77 chr3 27259543 27259840 -132339943 - MER2 DNA MER2_type -31 314 1 5 792 464 272 6 29 chr3 27259901 27260075 -132339708 + Lx5 LINE L1 894 1063 -6665 5 792 7334 150 61 158 chr3 27260046 27261196 -132338587 + Lx5 LINE L1 3417 4576 -1301 5 792 2597 154 46 164 chr3 27261196 27261889 -132337894 - RMER19C LTR ERVK 0 611 1 5 792 7334 150 62 160 chr3 27261889 27262728 -132337055 + Lx5 LINE L1 4577 5209 -668 5 792 27 0 0 0 chr3 27262776 27262803 -132336980 + AT_rich Low_complexity Low_complexity 1 27 0 5 793 893 85 91 15 chr3 27263065 27263189 -132336594 + B1_Mus1 SINE Alu 2 136 -12 5 793 423 0 0 0 chr3 27263189 27263236 -132336547 + (CAA)n Simple_repeat Simple_repeat 2 48 0 5 793 1065 102 17 11 chr3 27263252 27263431 -132336352 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 5 793 645 80 0 0 chr3 27263431 27263519 -132336264 + (GAAA)n Simple_repeat Simple_repeat 1 88 0 6 793 7008 84 25 4 chr3 27263823 27264840 -132334943 - MusHAL1 LINE L1 -603 2109 1072 6 793 3339 183 48 48 chr3 27264845 27265836 -132333947 + Lx5 LINE L1 5347 6308 -742 5 793 5358 120 58 13 chr3 27265850 27266802 -132332981 - MTA_Mm-int LTR MaLR -261 997 3 6 793 3418 30 5 0 chr3 27266802 27267196 -132332587 - MTA_Mm LTR MaLR 0 396 1 6 793 359 96 19 0 chr3 27267196 27267248 -132332535 + Lx5 LINE L1 6521 6573 -887 5 793 516 101 0 0 chr3 27267380 27267469 -132332314 + (TC)n Simple_repeat Simple_repeat 1 89 0 6 793 260 53 26 0 chr3 27267469 27267507 -132332276 + (TG)n Simple_repeat Simple_repeat 1 39 0 6 793 318 300 64 87 chr3 27267576 27267668 -132332115 - B4A SINE B4 -78 214 123 6 793 186 103 0 0 chr3 27267668 27267697 -132332086 + (TAA)n Simple_repeat Simple_repeat 2 30 0 6 793 318 300 64 87 chr3 27267697 27267823 -132331960 - B4A SINE B4 -170 122 1 6 793 222 118 0 0 chr3 27268325 27268359 -132331424 + (A)n Simple_repeat Simple_repeat 1 34 0 6 793 213 65 0 0 chr3 27268712 27268743 -132331040 + (TC)n Simple_repeat Simple_repeat 2 32 0 6 793 219 260 25 25 chr3 27270415 27270494 -132329289 + GA-rich Low_complexity Low_complexity 1 79 0 6 793 22 0 0 0 chr3 27270624 27270646 -132329137 + GC_rich Low_complexity Low_complexity 1 22 0 6 793 231 229 39 71 chr3 27271566 27271693 -132328090 + (TCTCTG)n Simple_repeat Simple_repeat 3 125 0 6 793 282 299 109 20 chr3 27274308 27274509 -132325274 - Charlie5 DNA MER1_type -150 2474 2256 6 793 336 298 0 37 chr3 27274537 27274645 -132325138 - Charlie5 DNA MER1_type -2515 109 6 6 793 565 241 14 14 chr3 27276547 27276686 -132323097 + B1F SINE Alu 1 139 -10 6 793 458 100 22 0 chr3 27278650 27278740 -132321043 + (TCTG)n Simple_repeat Simple_repeat 1 92 0 6 793 632 124 47 0 chr3 27278793 27278962 -132320821 + (TCTG)n Simple_repeat Simple_repeat 4 180 0 6 793 2017 210 30 70 chr3 27279144 27279703 -132320080 - RLTR31_Mur LTR ERVK -16 537 1 6 793 299 179 0 15 chr3 27280017 27280085 -132319698 + GA-rich Low_complexity Low_complexity 2 68 0 6 793 519 247 154 11 chr3 27280254 27280442 -132319341 - B3 SINE B2 0 216 2 6 793 1872 208 105 3 chr3 27280669 27281050 -132318733 + MTC LTR MaLR 1 420 -1 6 793 481 288 65 40 chr3 27281050 27281239 -132318544 + B4A SINE B4 8 204 -88 6 793 234 0 0 0 chr3 27281279 27281305 -132318478 + (CA)n Simple_repeat Simple_repeat 2 27 0 6 793 477 222 159 0 chr3 27281959 27282085 -132317698 + B4 SINE B4 124 269 -23 6 793 315 0 0 0 chr3 27282085 27282120 -132317663 + (CA)n Simple_repeat Simple_repeat 2 36 0 6 793 317 284 28 0 chr3 27282122 27282231 -132317552 + (TA)n Simple_repeat Simple_repeat 2 113 0 6 793 181 212 13 120 chr3 27282363 27282438 -132317345 - MIR SINE MIR -87 175 109 6 793 219 146 0 0 chr3 27282474 27282515 -132317268 + (CAGA)n Simple_repeat Simple_repeat 2 42 0 6 793 631 262 5 31 chr3 27283658 27283851 -132315932 + L1MA5 LINE L1 6108 6295 -5 6 793 515 274 193 6 chr3 27283883 27284059 -132315724 + ID_B1 SINE B4 3 211 -13 6 793 2222 113 3 41 chr3 27284091 27284431 -132315352 + ORR1A2 LTR MaLR 1 327 0 6 793 286 330 90 42 chr3 27284609 27284821 -132314962 + BLACKJACK DNA AcHobo 53 274 -2670 6 793 379 338 73 93 chr3 27285172 27285720 -132314063 + BLACKJACK DNA AcHobo 967 1503 -1441 6 793 1594 219 32 87 chr3 27285755 27286191 -132313592 - RMER1B Other Other -45 1021 610 6 793 1011 271 38 19 chr3 27286190 27286510 -132313273 + Lx6 LINE L1 7108 7433 -27 6 793 569 239 7 21 chr3 27286532 27286673 -132313110 - MT2A LTR ERVL -394 139 1 6 793 499 195 16 0 chr3 27287991 27288119 -132311664 + (CCA)n Simple_repeat Simple_repeat 1 130 0 6 793 350 273 73 24 chr3 27288385 27288420 -132311363 - AmnSINE1 SINE SINE -445 130 1 6 793 518 180 11 0 chr3 27288420 27288509 -132311274 - 5S rRNA rRNA -31 90 1 6 793 684 67 0 0 chr3 27288575 27288665 -132311118 + (GA)n Simple_repeat Simple_repeat 1 90 0 6 793 274 233 109 22 chr3 27289959 27290051 -132309732 + MLT1A LTR MaLR 39 138 -236 6 793 545 271 57 19 chr3 27290072 27290230 -132309553 + RSINE1 SINE B4 2 165 0 6 793 243 335 70 41 chr3 27290322 27290493 -132309290 + MLT1A LTR MaLR 213 388 -2 6 793 1661 163 159 22 chr3 27290795 27291165 -132308618 + MTC LTR MaLR 1 421 0 6 793 495 0 0 0 chr3 27291415 27291470 -132308313 + (TC)n Simple_repeat Simple_repeat 2 56 0 6 793 625 214 71 0 chr3 27291470 27291596 -132308187 - B1F2 SINE Alu -12 137 3 6 793 198 0 0 0 chr3 27291609 27291631 -132308152 + (T)n Simple_repeat Simple_repeat 1 22 0 6 793 6731 7 0 0 chr3 27291635 27292368 -132307415 - L1Md_T LINE L1 0 6582 5850 6 793 32410 86 17 2 chr3 27293986 27298583 -132301200 - L1_Mus1 LINE L1 0 6567 1930 6 793 3449 28 5 0 chr3 27298583 27298977 -132300806 - MTA_Mm LTR MaLR 0 396 1 6 793 32410 139 35 35 chr3 27298977 27300664 -132299119 - L1_Mus1 LINE L1 -3954 1929 222 6 793 713 210 7 0 chr3 27301406 27301544 -132298239 + B1_Mur3 SINE Alu 2 140 -9 6 793 620 288 39 48 chr3 27302330 27302538 -132297245 - ID_B1 SINE B4 -13 211 6 6 793 477 197 23 100 chr3 27303038 27303128 -132296655 + B3 SINE B2 96 187 -29 6 793 198 0 0 0 chr3 27303128 27303150 -132296633 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 6 793 477 197 23 100 chr3 27303150 27303189 -132296594 + B3 SINE B2 188 215 -1 6 793 3033 147 32 9 chr3 27303528 27304058 -132295725 - Lx2B LINE L1 -551 6449 5908 6 793 762 87 77 0 chr3 27304051 27304155 -132295628 + Lx2B LINE L1 6473 6584 -416 6 793 6785 86 1 22 chr3 27304155 27305082 -132294701 + L1Md_F2 LINE L1 5675 6582 0 6 793 286 309 118 35 chr3 27305089 27305488 -132294295 + L1MC LINE L1 3291 3722 -2424 6 793 832 194 7 7 chr3 27305622 27305767 -132294016 + B1_Mur1 SINE Alu 5 149 0 6 793 282 95 0 0 chr3 27305980 27306022 -132293761 + (CAA)n Simple_repeat Simple_repeat 2 43 0 6 793 560 156 9 0 chr3 27308250 27308359 -132291424 + (CA)n Simple_repeat Simple_repeat 1 110 0 6 793 424 233 224 7 chr3 27308465 27308612 -132291171 - B3A SINE B2 -16 182 4 6 793 1156 259 70 34 chr3 27308716 27309072 -132290711 - MTEa LTR MaLR 0 379 11 6 793 334 353 51 16 chr3 27309276 27309515 -132290268 - MLT1G LTR MaLR -333 258 57 6 793 182 333 95 0 chr3 27309629 27309713 -132290070 + MIRb SINE MIR 112 203 -65 6 793 526 269 85 81 chr3 27310375 27310477 -132289306 + MTEb LTR MaLR 51 151 -228 6 793 500 0 17 0 chr3 27310477 27310537 -132289246 + (TG)n Simple_repeat Simple_repeat 2 62 0 6 793 526 269 85 81 chr3 27310537 27310681 -132289102 + MTEb LTR MaLR 152 297 -82 6 793 1252 269 102 30 chr3 27310970 27311537 -132288246 - L1MB7 LINE L1 -59 6125 5518 6 793 632 264 22 166 chr3 27311559 27311963 -132287820 - L1MB7 LINE L1 -1106 5040 4695 6 793 288 274 123 87 chr3 27312160 27312460 -132287323 - L1MB7 LINE L1 -1975 4171 3861 6 793 1354 244 15 65 chr3 27312506 27312905 -132286878 + MTEb LTR MaLR 1 379 0 6 793 226 284 50 75 chr3 27313210 27313290 -132286493 - ID_B1 SINE B4 -65 159 82 6 793 269 271 202 37 chr3 27313530 27313856 -132285927 - HAL1 LINE L1 -805 1702 1323 6 793 209 212 0 43 chr3 27314004 27314073 -132285710 + T-rich Low_complexity Low_complexity 2 67 0 6 793 600 14 0 0 chr3 27314343 27314412 -132285371 + (GAAA)n Simple_repeat Simple_repeat 1 69 0 6 793 204 310 0 66 chr3 27317028 27317104 -132282679 - MIRm SINE MIR -178 98 28 6 793 344 266 65 92 chr3 27318849 27319002 -132280781 + RMER30 DNA MER1_type 2 150 -52 6 793 718 148 17 28 chr3 27319196 27319377 -132280406 + G-rich Low_complexity Low_complexity 2 180 0 6 793 265 297 36 0 chr3 27319425 27319553 -132280230 - L1M4 LINE L1 -425 5739 5606 6 793 497 189 38 89 chr3 27319909 27320066 -132279717 + B1_Mur2 SINE Alu 1 149 0 6 793 206 81 27 0 chr3 27320066 27320103 -132279680 + (CAAA)n Simple_repeat Simple_repeat 3 40 0 6 793 624 165 120 0 chr3 27320267 27320400 -132279383 + MTC LTR MaLR 1 149 -272 6 793 945 156 0 34 chr3 27320411 27320590 -132279193 + MTC LTR MaLR 243 415 -6 6 793 359 207 23 19 chr3 27325332 27325643 -132274140 + (TCCA)n Simple_repeat Simple_repeat 1 311 0 6 793 21 57 0 0 chr3 27326225 27326260 -132273523 + AT_rich Low_complexity Low_complexity 1 35 0 6 793 396 0 0 0 chr3 27326902 27326946 -132272837 + (CA)n Simple_repeat Simple_repeat 2 45 0 6 793 260 250 158 0 chr3 27331242 27331362 -132268421 + L1MC1 LINE L1 6195 6333 0 6 793 432 0 0 0 chr3 27332250 27332298 -132267485 + (TG)n Simple_repeat Simple_repeat 1 48 0 6 793 802 237 100 0 chr3 27332723 27332913 -132266870 - B3 SINE B2 -6 210 2 6 793 230 148 19 0 chr3 27333896 27333950 -132265833 + G-rich Low_complexity Low_complexity 2 56 0 6 793 185 94 0 30 chr3 27334877 27334910 -132264873 + (GGGA)n Simple_repeat Simple_repeat 4 35 0 6 793 483 18 0 0 chr3 27335056 27335112 -132264671 + (TG)n Simple_repeat Simple_repeat 2 57 0 6 793 279 279 11 44 chr3 27335112 27335202 -132264581 - B4A SINE B4 -23 269 183 6 793 457 281 63 21 chr3 27335234 27335376 -132264407 + B1F1 SINE Alu 1 148 -1 6 793 531 118 0 0 chr3 27335376 27335461 -132264322 + (GAAA)n Simple_repeat Simple_repeat 1 85 0 6 793 252 0 0 0 chr3 27335461 27335489 -132264294 + (CA)n Simple_repeat Simple_repeat 2 29 0 6 793 181 302 123 90 chr3 27337326 27337537 -132262246 + MIRm SINE MIR 1 218 -58 6 793 1207 71 0 9 chr3 27337718 27337946 -132261837 + (TG)n Simple_repeat Simple_repeat 1 225 0 6 793 415 292 86 36 chr3 27340703 27340923 -132258860 + L1MD LINE L1 3858 4088 -2058 6 793 316 299 95 0 chr3 27341034 27341171 -132258612 + L1MD LINE L1 4456 4605 -1541 6 793 318 239 21 74 chr3 27341171 27341266 -132258517 + PB1D10 SINE Alu 27 116 -1 6 793 1427 277 54 45 chr3 27341286 27341971 -132257812 + L1MD LINE L1 4600 5290 -856 6 793 214 271 17 0 chr3 27342168 27342227 -132257556 + (TATG)n Simple_repeat Simple_repeat 1 60 0 6 793 1165 161 36 14 chr3 27343082 27343303 -132256480 + URR1A DNA MER1_type 1 226 0 6 793 183 204 107 36 chr3 27343339 27343395 -132256388 - MER5A DNA MER1_type -67 122 63 6 793 231 342 27 0 chr3 27343481 27343554 -132256229 + MIRc SINE MIR 93 167 -101 6 793 234 274 146 32 chr3 27345403 27345561 -132254222 - MIRb SINE MIR -72 196 21 6 793 185 321 57 0 chr3 27345603 27345656 -132254127 + MIRm SINE MIR 207 262 -14 6 793 438 20 0 0 chr3 27346462 27346513 -132253270 + (TG)n Simple_repeat Simple_repeat 2 52 0 6 793 451 295 33 0 chr3 27346529 27346651 -132253132 - RSINE1 SINE B4 -37 128 3 6 793 739 289 20 41 chr3 27346655 27346874 -132252909 - B3A SINE B2 -5 211 4 7 793 671 246 7 0 chr3 27346895 27347033 -132252750 - B1_Mur1 SINE Alu -1 148 10 7 793 325 288 44 120 chr3 27346896 27347054 -132252729 - B4 SINE B4 -69 223 78 7 793 450 0 0 0 chr3 27347081 27347131 -132252652 + (TC)n Simple_repeat Simple_repeat 1 50 0 7 793 348 24 0 0 chr3 27347131 27347171 -132252612 + (CA)n Simple_repeat Simple_repeat 1 41 0 7 793 806 169 203 0 chr3 27348018 27348195 -132251588 + B3 SINE B2 2 214 -2 7 793 210 108 27 0 chr3 27348438 27348475 -132251308 - B4 SINE B4 -253 39 2 7 793 374 311 90 43 chr3 27348979 27349167 -132250616 + B4 SINE B4 2 198 -94 7 793 471 228 73 13 chr3 27349184 27349299 -132250484 + B1F2 SINE Alu 42 150 0 7 793 235 273 12 105 chr3 27349350 27349436 -132250347 + B4 SINE B4 215 292 0 7 793 249 33 0 0 chr3 27349479 27349509 -132250274 + (CA)n Simple_repeat Simple_repeat 1 30 0 7 793 453 270 98 33 chr3 27351132 27351316 -132248467 - B3A SINE B2 0 198 3 7 793 198 323 79 107 chr3 27351333 27351586 -132248197 + L2 LINE L2 2837 3082 -337 7 793 440 284 149 0 chr3 27351871 27352012 -132247771 + B3 SINE B2 39 200 -16 7 793 732 239 94 20 chr3 27352776 27352977 -132246806 + B3 SINE B2 1 216 0 7 793 252 286 51 80 chr3 27354569 27354706 -132245077 + MTEb LTR MaLR 91 223 -156 7 793 859 290 21 35 chr3 27354973 27355262 -132244521 - B4A SINE B4 -6 286 2 7 793 471 35 0 0 chr3 27355758 27355815 -132243968 + (CA)n Simple_repeat Simple_repeat 1 57 0 7 793 460 262 9 9 chr3 27356418 27356526 -132243257 - PB1D10 SINE Alu -9 108 1 7 793 434 251 182 12 chr3 27357160 27357325 -132242458 - B4 SINE B4 -99 193 1 7 793 378 0 0 0 chr3 27357423 27357465 -132242318 + (CA)n Simple_repeat Simple_repeat 2 43 0 7 793 646 247 113 0 chr3 27357864 27358058 -132241725 - B3 SINE B2 0 216 1 7 793 213 39 0 0 chr3 27359745 27359771 -132240012 + (TG)n Simple_repeat Simple_repeat 2 27 0 7 793 189 107 0 0 chr3 27362321 27362349 -132237434 + (CAAAAA)n Simple_repeat Simple_repeat 3 30 0 7 793 297 89 0 0 chr3 27362504 27362549 -132237234 + (CAGA)n Simple_repeat Simple_repeat 2 46 0 7 793 317 305 0 87 chr3 27362920 27363035 -132236748 - PB1D7 SINE Alu -5 115 11 7 793 22 56 0 0 chr3 27364314 27364350 -132235433 + AT_rich Low_complexity Low_complexity 1 36 0 7 793 259 315 76 0 chr3 27365039 27365131 -132234652 + B1F SINE Alu 40 138 -11 7 793 900 51 0 0 chr3 27365134 27365252 -132234531 + (GGA)n Simple_repeat Simple_repeat 2 119 0 7 793 913 168 126 0 chr3 27365737 27365904 -132233879 + URR1B DNA MER1_type 38 225 0 7 793 430 32 0 45 chr3 27366854 27366920 -132232863 + (TCCC)n Simple_repeat Simple_repeat 3 65 0 7 793 321 254 245 34 chr3 27367160 27367307 -132232476 - MER3 DNA MER1_type -25 184 7 7 793 1135 65 0 0 chr3 27368714 27368852 -132230931 + B1_Mus2 SINE Alu 1 138 -9 7 793 356 303 82 22 chr3 27370113 27370248 -132229535 + HAL1-3A_ME LINE L1 1981 2123 -735 7 793 256 277 46 46 chr3 27370452 27370539 -132229244 - PB1D10 SINE Alu -8 109 23 7 793 584 265 0 13 chr3 27370722 27370871 -132228912 + B1F2 SINE Alu 3 149 0 7 793 527 291 87 6 chr3 27371897 27372080 -132227703 - B3A SINE B2 0 198 1 7 793 2522 74 5 49 chr3 27372157 27372290 -132227493 + MTB LTR MaLR 1 125 -275 7 793 216 0 0 0 chr3 27372290 27372314 -132227469 + (TGG)n Simple_repeat Simple_repeat 2 25 0 7 793 2522 74 5 49 chr3 27372314 27372548 -132227235 + MTB LTR MaLR 126 352 -48 7 793 1294 39 18 21 chr3 27373873 27374210 -132225573 + (GGGAA)n Simple_repeat Simple_repeat 1 335 0 7 793 372 271 320 14 chr3 27374229 27374433 -132225350 + B4 SINE B4 24 290 -2 7 793 180 0 0 0 chr3 27374840 27374860 -132224923 + (TTG)n Simple_repeat Simple_repeat 2 21 0 7 793 414 311 55 16 chr3 27376352 27376535 -132223248 + ID_B1 SINE B4 27 216 -8 7 793 993 41 0 0 chr3 27376940 27377062 -132222721 + (TC)n Simple_repeat Simple_repeat 1 122 0 7 793 338 211 14 14 chr3 27377063 27377135 -132222648 - ID4_ SINE ID -11 72 1 7 793 483 256 180 35 chr3 27377825 27378080 -132221703 + B4 SINE B4 1 292 0 7 793 528 283 71 18 chr3 27378927 27379096 -132220687 + B4A SINE B4 99 276 -16 7 793 204 97 0 0 chr3 27379145 27379176 -132220607 + (CAGA)n Simple_repeat Simple_repeat 2 32 0 7 793 1900 149 37 112 chr3 27379412 27379821 -132219962 + MTC LTR MaLR 1 378 -43 7 793 420 342 86 62 chr3 27380141 27380465 -132219318 - ORR1E LTR MaLR -22 337 6 7 793 258 95 0 0 chr3 27381077 27381119 -132218664 + (CCTG)n Simple_repeat Simple_repeat 2 43 0 7 793 1186 35 14 20 chr3 27381131 27381279 -132218504 - B1_Mm SINE Alu 0 147 1 7 793 261 0 0 0 chr3 27381555 27381584 -132218199 + (CA)n Simple_repeat Simple_repeat 2 30 0 7 793 25 31 0 0 chr3 27381690 27381722 -132218061 + AT_rich Low_complexity Low_complexity 1 32 0 7 793 216 0 0 0 chr3 27381724 27381748 -132218035 + (T)n Simple_repeat Simple_repeat 1 24 0 7 793 243 272 161 0 chr3 27382199 27382280 -132217503 + B4A SINE B4 1 94 -198 7 793 648 189 81 29 chr3 27383176 27383312 -132216471 - RSINE1 SINE B4 0 165 23 7 793 231 204 0 0 chr3 27383312 27383361 -132216422 + (TCCTG)n Simple_repeat Simple_repeat 3 51 0 7 793 813 153 0 0 chr3 27383373 27383530 -132216253 + CT-rich Low_complexity Low_complexity 2 158 0 7 793 375 341 31 0 chr3 27385003 27385132 -132214651 + B4 SINE B4 1 133 -159 7 793 225 147 3 0 chr3 27385511 27385551 -132214232 + B4 SINE B4 96 136 -156 7 793 215 150 25 0 chr3 27385799 27385839 -132213944 + B4A SINE B4 96 136 -156 7 793 745 244 44 14 chr3 27385887 27386084 -132213699 + B4 SINE B4 83 290 -2 7 793 198 233 0 0 chr3 27386096 27386156 -132213627 + (CA)n Simple_repeat Simple_repeat 1 60 0 7 793 189 121 0 0 chr3 27386831 27386864 -132212919 + (CAAGC)n Simple_repeat Simple_repeat 2 34 0 7 793 1060 192 235 153 chr3 27391284 27391586 -132208197 + MTD LTR MaLR 1 331 -88 7 793 523 136 216 52 chr3 27391586 27391702 -132208081 + B1_Mus2 SINE Alu 1 135 -12 7 793 1060 192 22 190 chr3 27391702 27391809 -132207974 + MTD LTR MaLR 332 418 -1 7 793 321 368 116 12 chr3 27391898 27392148 -132207635 + L1MC5 LINE L1 7318 7593 -368 7 793 295 259 17 0 chr3 27392423 27392481 -132207302 + tRNA-Ala-GCY_ tRNA tRNA 6 64 -11 7 793 523 202 0 0 chr3 27392716 27392800 -132206983 + RSINE1 SINE B4 48 131 -34 7 793 741 266 38 17 chr3 27393716 27393953 -132205830 - B4 SINE B4 -4 288 47 7 794 26 30 0 0 chr3 27394126 27394159 -132205624 + AT_rich Low_complexity Low_complexity 1 33 0 7 794 219 114 0 0 chr3 27394279 27394314 -132205469 + (CAG)n Simple_repeat Simple_repeat 1 35 0 7 794 335 253 116 0 chr3 27394826 27394841 -132204942 + ID_B1 SINE B4 67 92 -132 7 794 330 265 136 10 chr3 27394841 27394944 -132204839 + PB1D10 SINE Alu 2 117 0 7 794 196 28 0 77 chr3 27394944 27394983 -132204800 + (CAAAAA)n Simple_repeat Simple_repeat 5 40 0 7 794 1128 215 214 46 chr3 27394997 27395557 -132204226 + Lx9 LINE L1 6988 7641 -3 7 794 394 286 22 22 chr3 27396112 27396248 -132203535 - ID_B1 SINE B4 -1 223 88 7 794 381 265 101 14 chr3 27396294 27396432 -132203351 - RSINE1 SINE B4 -3 162 13 7 794 273 119 0 0 chr3 27397060 27397102 -132202681 + (TATG)n Simple_repeat Simple_repeat 2 43 0 7 794 213 39 0 0 chr3 27397102 27397128 -132202655 + (CA)n Simple_repeat Simple_repeat 2 27 0 7 794 207 0 0 0 chr3 27397195 27397218 -132202565 + (TG)n Simple_repeat Simple_repeat 2 24 0 7 794 839 249 92 77 chr3 27397218 27397479 -132202304 - B4A SINE B4 -27 265 1 7 794 22 0 0 0 chr3 27397479 27397501 -132202282 + AT_rich Low_complexity Low_complexity 1 22 0 7 794 22 0 0 0 chr3 27397981 27398003 -132201780 + AT_rich Low_complexity Low_complexity 1 22 0 7 794 319 276 9 28 chr3 27398259 27398367 -132201416 + PB1D10 SINE Alu 2 107 -10 7 794 286 231 36 72 chr3 27399166 27399271 -132200512 + PB1 SINE Alu 6 119 -8 7 794 216 319 0 0 chr3 27400138 27400185 -132199598 - ID4_ SINE ID -2 81 35 7 794 517 260 27 7 chr3 27401875 27402022 -132197761 + MTEb LTR MaLR 230 379 0 7 794 246 207 15 121 chr3 27405023 27405089 -132194694 - B3 SINE B2 -135 60 2 7 794 845 244 57 31 chr3 27405089 27405313 -132194470 - B4A SINE B4 -62 230 1 7 794 3311 172 82 15 chr3 27405946 27406595 -132193188 + RLTR17 LTR ERVK 1 692 0 7 794 376 236 11 11 chr3 27408800 27408894 -132190889 + PB1D10 SINE Alu 3 96 -21 7 794 226 209 11 55 chr3 27409115 27409206 -132190577 + GA-rich Low_complexity Low_complexity 2 88 0 7 794 874 55 155 16 chr3 27410584 27410713 -132189070 + B1_Mus1 SINE Alu 1 147 -1 7 794 227 268 119 40 chr3 27411167 27411268 -132188515 + MLT1A0 LTR MaLR 113 221 -144 7 794 726 280 30 63 chr3 27411407 27411483 -132188300 - B4 SINE B4 -1 291 215 7 794 399 21 0 0 chr3 27411483 27411531 -132188252 + (TTTTG)n Simple_repeat Simple_repeat 3 50 0 7 794 726 280 30 63 chr3 27411531 27411755 -132188028 - B4 SINE B4 -78 214 1 7 794 2121 298 121 25 chr3 27412509 27413393 -132186390 - RCHARR1 DNA MER1_type 0 974 6 7 794 26 0 0 0 chr3 27413514 27413540 -132186243 + AT_rich Low_complexity Low_complexity 1 26 0 7 794 229 301 55 0 chr3 27413541 27413614 -132186169 - ID4 SINE ID -5 78 2 7 794 512 327 0 13 chr3 27415520 27415672 -132184111 + RCHARR1 DNA MER1_type 2 151 -823 7 794 847 255 127 83 chr3 27415716 27416054 -132183729 + ORR1E LTR MaLR 2 354 -5 8 794 897 165 0 0 chr3 27416080 27416612 -132183171 + (CA)n Simple_repeat Simple_repeat 1 532 0 8 794 2048 240 104 3 chr3 27416691 27417267 -132182516 + RCHARR1 DNA MER1_type 315 948 -26 7 794 625 226 203 0 chr3 27417308 27417485 -132182298 + B3 SINE B2 4 216 0 8 794 200 111 0 27 chr3 27420026 27420063 -132179720 + (TTTC)n Simple_repeat Simple_repeat 1 36 0 8 794 837 0 0 0 chr3 27420099 27420192 -132179591 + (TTCTC)n Simple_repeat Simple_repeat 4 96 0 8 794 447 274 0 0 chr3 27421878 27422042 -132177741 + (CA)n Simple_repeat Simple_repeat 2 165 0 8 794 438 315 99 93 chr3 27424255 27424752 -132175031 + MLT1D LTR MaLR 1 500 -5 8 794 229 111 0 27 chr3 27425107 27425144 -132174639 + LTR9 LTR ERV1 94 129 -483 8 794 527 291 87 10 chr3 27425948 27426156 -132173627 - ID_B1 SINE B4 0 224 1 8 794 483 294 87 44 chr3 27426598 27426804 -132172979 + B4 SINE B4 1 215 -77 8 794 1418 10 0 25 chr3 27426930 27427339 -132172444 + (CA)n Simple_repeat Simple_repeat 1 398 0 8 794 278 206 101 14 chr3 27430393 27430462 -132169321 - B3 SINE B2 -4 212 138 8 794 420 86 36 24 chr3 27430519 27430602 -132169181 + (CGTG)n Simple_repeat Simple_repeat 1 84 0 8 794 365 339 0 0 chr3 27430603 27430718 -132169065 - PB1D10 SINE Alu -1 116 2 8 794 830 235 66 10 chr3 27430790 27430988 -132168795 - B3 SINE B2 -6 210 2 8 794 197 361 10 10 chr3 27431468 27431566 -132168217 - L2c LINE L2 -232 3155 3058 8 794 531 0 0 0 chr3 27431842 27431901 -132167882 + (CA)n Simple_repeat Simple_repeat 2 60 0 8 794 225 0 0 0 chr3 27431906 27431931 -132167852 + (CAGAGA)n Simple_repeat Simple_repeat 2 26 0 8 794 533 290 34 7 chr3 27432195 27432341 -132167442 + ID_B1 SINE B4 3 152 -72 8 794 184 313 35 24 chr3 27432900 27432985 -132166798 - MIRm SINE MIR -14 262 177 8 794 230 288 27 14 chr3 27433303 27433377 -132166406 - ID4_ SINE ID -8 75 1 8 794 309 125 0 0 chr3 27434307 27434363 -132165420 + (TG)n Simple_repeat Simple_repeat 1 56 0 8 794 375 137 0 0 chr3 27434363 27434436 -132165347 + (GA)n Simple_repeat Simple_repeat 2 74 0 8 794 212 328 0 0 chr3 27434611 27434675 -132165108 + FLAM_A SINE Alu 7 70 -225 8 794 2005 142 72 24 chr3 27434677 27435052 -132164731 + ORR1B1 LTR MaLR 1 393 -1 8 794 873 183 139 0 chr3 27435458 27435638 -132164145 + URR1B DNA MER1_type 1 205 -20 8 794 645 271 124 21 chr3 27435641 27435747 -132164036 + B4A SINE B4 14 132 -160 8 794 273 75 0 0 chr3 27435747 27435787 -132163996 + (CA)n Simple_repeat Simple_repeat 1 40 0 8 794 645 271 124 21 chr3 27435787 27435921 -132163862 + B4A SINE B4 133 279 -13 8 794 200 186 17 0 chr3 27435966 27436025 -132163758 + (CA)n Simple_repeat Simple_repeat 1 60 0 8 794 995 230 54 5 chr3 27437901 27438106 -132161677 - B3 SINE B2 0 216 2 8 794 1115 67 0 0 chr3 27438136 27438270 -132161513 + B1_Mus1 SINE Alu 3 136 -12 8 794 466 273 143 0 chr3 27438299 27438453 -132161330 - B3 SINE B2 -40 176 1 8 794 24 32 0 0 chr3 27438459 27438490 -132161293 + AT_rich Low_complexity Low_complexity 1 31 0 8 794 490 257 9 9 chr3 27439490 27439596 -132160187 + PB1D7 SINE Alu 14 119 -1 8 794 212 160 0 74 chr3 27439597 27439629 -132160154 + T-rich Low_complexity Low_complexity 19 50 0 8 794 997 31 139 0 chr3 27439629 27439758 -132160025 - B1_Mus1 SINE Alu 0 148 2 8 794 212 160 0 74 chr3 27439758 27439779 -132160004 + T-rich Low_complexity Low_complexity 1 18 0 8 794 221 57 29 0 chr3 27439900 27439935 -132159848 + (CAA)n Simple_repeat Simple_repeat 2 37 0 8 794 258 160 0 0 chr3 27440085 27440135 -132159648 + G-rich Low_complexity Low_complexity 2 51 0 8 794 692 252 40 10 chr3 27442436 27442636 -132157147 + B3 SINE B2 1 206 -10 8 794 2285 73 0 13 chr3 27442644 27442948 -132156835 + L1_Mus1 LINE L1 6266 6565 -2 8 794 369 0 0 0 chr3 27443514 27443555 -132156228 + (TTA)n Simple_repeat Simple_repeat 2 42 0 8 794 1329 97 0 36 chr3 27443580 27443773 -132156010 + B2_Mm2 SINE B2 1 186 -9 8 794 216 167 0 0 chr3 27444334 27444382 -132155401 + (TA)n Simple_repeat Simple_repeat 2 49 0 8 794 331 286 114 40 chr3 27444897 27445072 -132154711 + MLT1B LTR MaLR 202 389 -1 8 794 399 89 0 0 chr3 27445724 27445780 -132154003 + (CCA)n Simple_repeat Simple_repeat 1 56 0 8 794 215 200 33 0 chr3 27446523 27446583 -132153200 + A-rich Low_complexity Low_complexity 5 66 0 8 794 200 111 0 27 chr3 27447601 27447638 -132152145 + (CATG)n Simple_repeat Simple_repeat 3 38 0 8 794 336 267 171 36 chr3 27447638 27447768 -132152015 - RSINE1 SINE B4 -10 155 6 8 794 864 182 164 45 chr3 27448426 27448627 -132151156 - URR1B DNA MER1_type 0 225 1 8 794 563 282 143 51 chr3 27448699 27449035 -132150748 + MTE2b LTR MaLR 13 379 0 8 794 225 0 0 0 chr3 27449137 27449162 -132150621 + (CA)n Simple_repeat Simple_repeat 2 26 0 8 794 1260 102 32 0 chr3 27449419 27449605 -132150178 + B2_Mm2 SINE B2 3 194 -1 8 794 926 282 131 49 chr3 27449966 27450533 -132149250 - L1MB7 LINE L1 -9 6175 5563 8 794 223 139 0 0 chr3 27450839 27450875 -132148908 - PB1D10 SINE Alu -14 103 68 8 794 394 287 100 33 chr3 27451021 27451201 -132148582 - L1MB7 LINE L1 -1043 5103 4912 8 794 339 25 0 0 chr3 27451256 27451296 -132148487 + (CA)n Simple_repeat Simple_repeat 2 41 0 8 794 570 124 0 0 chr3 27451296 27451385 -132148398 + (TA)n Simple_repeat Simple_repeat 1 89 0 8 794 2336 150 44 15 chr3 27452209 27452615 -132147168 + MTC LTR MaLR 1 418 -3 8 794 207 0 0 0 chr3 27453852 27453875 -132145908 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 8 794 263 298 23 109 chr3 27454279 27454407 -132145376 + ID_B1 SINE B4 82 198 -26 8 794 609 279 54 29 chr3 27454595 27454835 -132144948 + MTD LTR MaLR 50 295 -124 8 794 273 318 18 18 chr3 27455666 27455775 -132144008 + PB1D10 SINE Alu 1 109 -8 8 794 264 388 0 0 chr3 27455804 27455889 -132143894 + ID4_ SINE ID 9 93 -59 8 794 277 246 661 0 chr3 27456068 27456186 -132143597 - ID_B1 SINE B4 -7 217 22 8 794 301 182 12 61 chr3 27457179 27457261 -132142522 + MIRb SINE MIR 90 167 -101 8 794 990 176 81 48 chr3 27457356 27457565 -132142218 - B3 SINE B2 0 216 1 8 794 1918 156 83 22 chr3 27459031 27459391 -132140392 + RLTR14 LTR ERV1 1 382 0 8 794 667 132 0 0 chr3 27459648 27459754 -132140029 + MTC LTR MaLR 223 328 -93 8 794 703 280 91 29 chr3 27459791 27460155 -132139628 + L1M4 LINE L1 4942 5331 -815 8 794 1581 168 55 37 chr3 27460155 27460557 -132139226 - RMER17C LTR ERVK 0 410 2 8 794 703 280 91 29 chr3 27460557 27460578 -132139205 + L1M4 LINE L1 5332 5351 -795 8 794 424 179 11 0 chr3 27460656 27460751 -132139032 + RLTR15 LTR ERVK 264 359 0 8 794 384 22 0 0 chr3 27461305 27461350 -132138433 + (CA)n Simple_repeat Simple_repeat 2 46 0 8 794 264 295 89 8 chr3 27463087 27463210 -132136573 - B4A SINE B4 -2 290 158 8 794 644 251 61 6 chr3 27463802 27463982 -132135801 + ID_B1 SINE B4 33 222 -2 8 794 247 302 0 0 chr3 27463983 27464046 -132135737 + GA-rich Low_complexity Low_complexity 1 63 0 8 794 28 0 0 0 chr3 27464647 27464675 -132135108 + AT_rich Low_complexity Low_complexity 1 28 0 8 794 268 292 148 40 chr3 27465632 27465882 -132133901 + B4 SINE B4 3 279 -13 8 794 35 24 0 0 chr3 27466052 27466094 -132133689 + AT_rich Low_complexity Low_complexity 1 42 0 8 794 494 309 142 9 chr3 27466499 27466731 -132133052 - B4A SINE B4 -5 287 25 8 794 225 0 0 0 chr3 27468466 27468491 -132131292 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 8 794 285 281 11 53 chr3 27468723 27468817 -132130966 - RSINE1 SINE B4 -26 139 50 8 794 711 65 0 0 chr3 27469103 27469196 -132130587 + (GAAA)n Simple_repeat Simple_repeat 3 95 0 8 794 829 219 102 16 chr3 27469578 27469764 -132130019 + B3 SINE B2 1 202 -14 8 794 474 125 0 0 chr3 27469764 27469844 -132129939 + (TAGA)n Simple_repeat Simple_repeat 1 80 0 8 794 241 26 53 0 chr3 27470435 27470473 -132129310 + (TC)n Simple_repeat Simple_repeat 2 41 0 8 794 252 0 0 0 chr3 27470474 27470502 -132129281 + (CA)n Simple_repeat Simple_repeat 2 29 0 8 794 21 0 0 0 chr3 27470623 27470644 -132129139 + AT_rich Low_complexity Low_complexity 1 21 0 8 794 301 254 45 24 chr3 27471001 27471106 -132128677 + MIR SINE MIR 56 154 -108 8 794 207 229 0 40 chr3 27471693 27471743 -132128040 + MIRm SINE MIR 209 256 -20 8 794 217 293 0 0 chr3 27474904 27474962 -132124821 - B2_Mm1t SINE B2 -135 58 1 8 794 295 235 11 23 chr3 27474986 27475073 -132124710 + (TA)n Simple_repeat Simple_repeat 2 87 0 8 794 800 331 7 29 chr3 27475697 27475971 -132123812 + B4 SINE B4 5 272 -20 8 794 287 250 10 0 chr3 27475982 27476082 -132123701 + GA-rich Low_complexity Low_complexity 1 101 0 8 794 213 108 0 0 chr3 27476083 27476120 -132123663 + (TGGA)n Simple_repeat Simple_repeat 4 40 0 8 794 21 0 0 0 chr3 27476568 27476589 -132123194 + AT_rich Low_complexity Low_complexity 1 21 0 8 794 469 281 44 0 chr3 27476606 27476741 -132123042 - RSINE1 SINE B4 -17 148 8 8 794 306 0 0 0 chr3 27477400 27477434 -132122349 + (TG)n Simple_repeat Simple_repeat 1 34 0 8 794 608 195 0 39 chr3 27477435 27477563 -132122220 - ID_B1 SINE B4 -10 214 92 8 794 777 215 68 14 chr3 27477702 27477924 -132121859 + Lx9 LINE L1 7377 7610 -34 8 794 235 263 0 0 chr3 27477946 27478003 -132121780 + (CA)n Simple_repeat Simple_repeat 2 58 0 8 794 325 260 18 80 chr3 27478079 27478192 -132121591 + L1MC4 LINE L1 6774 6879 -1163 8 794 334 187 11 42 chr3 27478443 27478538 -132121245 + RSINE1 SINE B4 39 130 -35 9 794 287 18 91 0 chr3 27479687 27479742 -132120041 + (TTTTG)n Simple_repeat Simple_repeat 1 60 0 9 794 1228 41 0 7 chr3 27479742 27479890 -132119893 - B1_Mus2 SINE Alu 0 147 1 9 794 560 81 11 0 chr3 27480461 27480548 -132119235 + (TCCC)n Simple_repeat Simple_repeat 4 91 0 9 794 438 240 9 9 chr3 27482286 27482391 -132117392 + RSINE1 SINE B4 2 106 -59 9 794 201 39 0 0 chr3 27482531 27482557 -132117226 + (GTTTG)n Simple_repeat Simple_repeat 5 30 0 9 794 859 170 0 13 chr3 27482557 27482697 -132117086 - B1_Mur2 SINE Alu -8 141 3 9 794 510 17 0 0 chr3 27483055 27483114 -132116669 + (TA)n Simple_repeat Simple_repeat 2 60 0 9 794 230 231 247 21 chr3 27483136 27483229 -132116554 + PB1D7 SINE Alu 1 114 -6 9 794 270 73 0 0 chr3 27484100 27484141 -132115642 + (T)n Simple_repeat Simple_repeat 1 41 0 9 794 198 103 0 0 chr3 27484244 27484273 -132115510 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 9 794 180 0 0 0 chr3 27485383 27485403 -132114380 + (TG)n Simple_repeat Simple_repeat 2 21 0 9 794 660 56 0 0 chr3 27485425 27485514 -132114269 + (GA)n Simple_repeat Simple_repeat 1 89 0 9 794 330 325 109 13 chr3 27485543 27485699 -132114084 - B4A SINE B4 -7 285 115 9 794 228 227 0 0 chr3 27485728 27485772 -132114011 + (TG)n Simple_repeat Simple_repeat 1 44 0 9 794 786 197 0 0 chr3 27485772 27485909 -132113874 - B1_Mus1 SINE Alu -10 138 2 9 794 366 223 10 21 chr3 27485909 27486005 -132113778 - B4A SINE B4 -197 95 1 9 794 27 29 0 0 chr3 27486026 27486060 -132113723 + AT_rich Low_complexity Low_complexity 1 34 0 9 794 21 0 0 0 chr3 27486338 27486359 -132113424 + AT_rich Low_complexity Low_complexity 1 21 0 9 794 366 225 252 24 chr3 27486408 27486531 -132113252 - B3A SINE B2 -45 153 3 9 794 195 42 0 0 chr3 27486721 27486745 -132113038 + (CA)n Simple_repeat Simple_repeat 2 25 0 9 794 531 45 0 0 chr3 27486956 27487022 -132112761 + (CA)n Simple_repeat Simple_repeat 1 66 0 9 794 439 340 11 68 chr3 27488384 27488518 -132111265 + B4A SINE B4 39 170 -122 9 794 1794 171 92 0 chr3 27488518 27488864 -132110919 - ORR1C1 LTR MaLR 0 378 1 9 794 439 340 11 68 chr3 27488864 27488988 -132110795 + B4A SINE B4 171 283 -9 9 794 234 81 0 0 chr3 27488988 27489025 -132110758 + (CAGAGA)n Simple_repeat Simple_repeat 6 42 0 9 794 336 24 0 0 chr3 27489418 27489459 -132110324 + (TTTG)n Simple_repeat Simple_repeat 1 41 0 9 794 201 74 0 0 chr3 27490592 27490619 -132109164 + (CG)n Simple_repeat Simple_repeat 2 28 0 9 794 198 0 0 0 chr3 27490619 27490640 -132109143 + (TG)n Simple_repeat Simple_repeat 2 23 0 9 794 655 188 23 15 chr3 27490692 27490822 -132108961 + B1_Mur1 SINE Alu 18 148 -1 9 794 1214 35 14 0 chr3 27490905 27491048 -132108735 - B1_Mus2 SINE Alu -2 145 1 9 794 201 94 0 0 chr3 27492288 27492320 -132107463 + (TTTG)n Simple_repeat Simple_repeat 3 34 0 9 794 449 172 131 0 chr3 27493235 27493334 -132106449 - PB1D9 SINE Alu -7 113 2 9 794 417 226 110 20 chr3 27494471 27494648 -132105135 - B4A SINE B4 -46 246 11 9 794 230 291 0 55 chr3 27495901 27496010 -132103773 + B4 SINE B4 51 153 -139 9 794 261 270 0 73 chr3 27496024 27496148 -132103635 + G-rich Low_complexity Low_complexity 5 119 0 9 794 422 270 4 79 chr3 27496168 27496393 -132103390 + B4A SINE B4 87 292 0 9 794 345 239 11 11 chr3 27497452 27497541 -132102242 + ORR1E LTR MaLR 47 135 -224 9 794 216 0 0 0 chr3 27497697 27497721 -132102062 + (T)n Simple_repeat Simple_repeat 1 24 0 9 794 25 0 0 0 chr3 27498555 27498580 -132101203 + AT_rich Low_complexity Low_complexity 1 25 0 9 794 225 0 0 0 chr3 27500575 27500600 -132099183 + (TCTA)n Simple_repeat Simple_repeat 2 26 0 1 794 3387 44 0 5 chr3 27502102 27502536 -132097247 + L1Md_F3 LINE L1 6175 6584 0 2 794 395 260 0 0 chr3 27502645 27502722 -132097061 - RSINE1 SINE B4 -88 77 1 3 794 494 288 26 64 chr3 27504147 27504303 -132095480 - B4 SINE B4 -28 264 115 4 794 731 83 0 8 chr3 27504304 27504426 -132095357 + (TCTCTG)n Simple_repeat Simple_repeat 2 122 0 5 794 545 246 17 0 chr3 27504432 27504550 -132095233 - B1_Mur1 SINE Alu -17 132 13 6 794 497 265 80 70 chr3 27504449 27504648 -132095135 - B4 SINE B4 -90 202 2 7 794 384 241 92 9 chr3 27504952 27505061 -132094722 - PB1D9 SINE Alu -1 119 2 8 794 786 331 27 57 chr3 27505149 27505447 -132094336 - B4A SINE B4 -3 289 1 9 794 579 71 0 0 chr3 27507363 27507448 -132092335 + (GGA)n Simple_repeat Simple_repeat 1 85 0 1 794 268 331 79 30 chr3 27507827 27507992 -132091791 + MER104 DNA Tc2 6 178 -3 1 794 756 33 0 0 chr3 27508528 27508619 -132091164 + (GGGA)n Simple_repeat Simple_repeat 3 93 0 1 794 662 212 83 92 chr3 27508641 27508859 -132090924 - B4 SINE B4 -4 288 73 1 794 492 18 0 0 chr3 27509858 27509915 -132089868 + (CA)n Simple_repeat Simple_repeat 2 58 0 1 794 270 0 0 0 chr3 27510698 27510728 -132089055 + (TG)n Simple_repeat Simple_repeat 1 30 0 1 794 393 22 0 0 chr3 27510728 27510773 -132089010 + (GA)n Simple_repeat Simple_repeat 1 46 0 1 794 450 53 0 0 chr3 27510858 27510915 -132088868 + (TA)n Simple_repeat Simple_repeat 1 57 0 1 794 24 0 0 0 chr3 27510921 27510945 -132088838 + AT_rich Low_complexity Low_complexity 1 24 0 1 794 230 53 79 0 chr3 27511343 27511381 -132088402 + (TTTTC)n Simple_repeat Simple_repeat 3 43 0 1 794 539 245 171 25 chr3 27511430 27511669 -132088114 - B4 SINE B4 -18 274 1 2 794 361 255 154 54 chr3 27511840 27511989 -132087794 - B3 SINE B2 -51 165 2 2 794 856 188 16 16 chr3 27512009 27512193 -132087590 + RLTR15 LTR ERVK 5 188 -171 2 794 183 100 0 0 chr3 27512565 27512595 -132087188 + (ATG)n Simple_repeat Simple_repeat 2 31 0 2 794 1090 90 14 0 chr3 27512697 27512842 -132086941 + B1_Mus1 SINE Alu 2 148 0 2 794 3397 33 8 0 chr3 27513810 27514203 -132085580 - MTA_Mm LTR MaLR 0 396 1 2 794 217 306 32 0 chr3 27515075 27515137 -132084646 + ID4_ SINE ID 5 68 -15 2 794 216 250 0 0 chr3 27515145 27515189 -132084594 + G-rich Low_complexity Low_complexity 3 46 0 2 794 491 186 33 58 chr3 27517830 27517950 -132081833 - ID_B1 SINE B4 0 224 108 2 794 235 330 94 0 chr3 27518777 27518883 -132080900 + MLT1F-int LTR MaLR 1317 1432 -57 2 794 313 293 106 33 chr3 27519067 27519247 -132080536 + MLT1E1A LTR MaLR 444 636 -44 3 794 405 0 0 0 chr3 27519330 27519375 -132080408 + (CA)n Simple_repeat Simple_repeat 2 46 0 3 794 806 235 60 5 chr3 27520648 27520849 -132078934 + B3 SINE B2 1 212 -4 3 794 1184 29 0 0 chr3 27520861 27520997 -132078786 + B1_Mus1 SINE Alu 1 136 -12 3 794 401 0 20 0 chr3 27520997 27521046 -132078737 + (TAAA)n Simple_repeat Simple_repeat 3 52 0 3 794 716 315 94 50 chr3 27521611 27521754 -132078029 + Lx8 LINE L1 6029 6198 -1498 3 794 396 0 0 0 chr3 27521754 27521798 -132077985 + (TG)n Simple_repeat Simple_repeat 2 45 0 3 794 1733 229 52 35 chr3 27521798 27522258 -132077525 + Lx8 LINE L1 6199 6659 -1037 3 794 2235 239 131 27 chr3 27522521 27522583 -132077200 - Lx8 LINE L1 -1 7472 7394 3 794 3564 18 2 0 chr3 27522583 27522978 -132076805 + MTA_Mm LTR MaLR 1 396 0 3 794 2235 239 131 27 chr3 27522978 27523650 -132076133 - Lx8 LINE L1 -80 7393 6664 3 99 364 292 10 10 chr3 27525106 27525203 -132074580 + B1_Mur1 SINE Alu 46 142 -7 3 795 674 330 0 57 chr3 27525243 27525471 -132074312 + B4 SINE B4 9 223 -69 4 795 325 272 12 0 chr3 27525958 27526039 -132073744 - ID4 SINE ID -1 82 1 4 795 357 302 6 3 chr3 27526137 27526457 -132073326 + (CA)n Simple_repeat Simple_repeat 1 321 0 4 795 1225 74 49 43 chr3 27526655 27526839 -132072944 + B2_Mm2 SINE B2 3 187 -8 4 795 522 240 77 44 chr3 27527140 27527323 -132072460 + B3A SINE B2 15 203 -13 4 795 343 352 39 22 chr3 27527487 27527667 -132072116 - MIRc SINE MIR -84 184 2 4 795 369 43 0 0 chr3 27528165 27528212 -132071571 + (GA)n Simple_repeat Simple_repeat 2 48 0 4 795 318 235 133 8 chr3 27529056 27529176 -132070607 - L1MB8 LINE L1 -4 6174 6040 4 795 477 254 74 26 chr3 27529271 27529501 -132070282 - L1MB8 LINE L1 -294 5884 5644 4 795 512 255 83 51 chr3 27529721 27529878 -132069905 + ID_B1 SINE B4 63 224 0 4 795 847 107 41 0 chr3 27530944 27531065 -132068718 - B1_Mus2 SINE Alu -13 134 9 4 795 327 252 96 48 chr3 27530974 27531078 -132068705 - B4A SINE B4 -98 194 86 5 795 329 174 14 0 chr3 27531511 27531580 -132068203 + GA-rich Low_complexity Low_complexity 1 70 0 5 795 857 286 36 55 chr3 27531628 27531902 -132067881 - B4A SINE B4 -18 274 6 5 795 26 0 0 0 chr3 27532789 27532815 -132066968 + AT_rich Low_complexity Low_complexity 1 26 0 5 795 1155 54 7 7 chr3 27532819 27532969 -132066814 + B2_Mm2 SINE B2 1 150 -45 5 795 288 0 0 0 chr3 27532972 27533004 -132066779 + (TAAA)n Simple_repeat Simple_repeat 3 34 0 5 795 227 31 31 0 chr3 27533229 27533261 -132066522 + (CAAT)n Simple_repeat Simple_repeat 4 36 0 5 795 515 236 49 28 chr3 27534143 27534287 -132065496 + MTE2b LTR MaLR 230 376 -3 5 795 213 94 0 0 chr3 27534301 27534333 -132065450 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 5 795 266 264 113 94 chr3 27534815 27534974 -132064809 - MER102b DNA MER1_type -42 299 138 5 795 539 292 28 67 chr3 27535276 27535456 -132064327 - MER2 DNA MER2_type -171 174 2 6 795 468 258 58 32 chr3 27535559 27535715 -132064068 + RSINE1 SINE B4 2 161 -4 6 795 495 0 0 0 chr3 27536568 27536623 -132063160 + (TTG)n Simple_repeat Simple_repeat 2 56 0 6 795 227 355 79 16 chr3 27537138 27537264 -132062519 + L2b LINE L2 3242 3375 0 6 795 245 133 0 32 chr3 27537964 27538026 -132061757 + A-rich Low_complexity Low_complexity 1 60 0 6 795 207 0 0 0 chr3 27538169 27538192 -132061591 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 6 795 483 224 144 7 chr3 27538581 27538734 -132061049 + MTE2b LTR MaLR 186 359 -20 6 795 903 125 7 20 chr3 27538934 27539081 -132060702 + B1_Mus1 SINE Alu 2 146 -2 6 795 449 221 42 192 chr3 27539220 27539511 -132060272 - B4 SINE B4 -2 290 49 6 795 416 299 56 41 chr3 27540817 27541012 -132058771 - B3A SINE B2 0 198 1 6 795 216 0 0 0 chr3 27541657 27541681 -132058102 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 7 795 489 239 85 8 chr3 27542327 27542445 -132057338 - B3A SINE B2 -67 131 5 7 795 1872 157 76 14 chr3 27542643 27543012 -132056771 + ORR1B1 LTR MaLR 3 394 0 7 795 443 233 163 131 chr3 27544164 27544446 -132055337 + B4 SINE B4 2 292 0 7 795 777 223 0 0 chr3 27544467 27544755 -132055028 + (CATA)n Simple_repeat Simple_repeat 1 288 0 7 795 209 231 37 37 chr3 27547697 27547778 -132052005 + (TATATG)n Simple_repeat Simple_repeat 1 81 0 7 795 219 250 94 62 chr3 27548195 27548259 -132051524 + PB1 SINE Alu 15 80 -47 7 795 1377 99 21 0 chr3 27548667 27548858 -132050925 + B2_Mm2 SINE B2 1 195 0 7 795 1006 120 0 0 chr3 27549331 27549473 -132050310 - B1_Mur4 SINE Alu 0 150 9 7 795 222 37 0 0 chr3 27549584 27549611 -132050172 + (TTTG)n Simple_repeat Simple_repeat 3 29 0 7 795 1037 215 24 0 chr3 27549614 27549819 -132049964 - B3 SINE B2 -6 210 1 8 795 360 64 0 0 chr3 27549949 27549996 -132049787 + (CA)n Simple_repeat Simple_repeat 1 47 0 8 795 236 289 0 0 chr3 27550324 27550376 -132049407 + G-rich Low_complexity Low_complexity 1 52 0 8 795 183 279 123 25 chr3 27552697 27552778 -132047005 - L3 LINE CR1 -73 4416 4328 8 795 226 150 0 91 chr3 27552961 27553049 -132046734 + (CA)n Simple_repeat Simple_repeat 1 80 0 8 795 23 0 0 0 chr3 27553705 27553728 -132046055 + AT_rich Low_complexity Low_complexity 1 23 0 8 795 486 282 141 0 chr3 27553751 27553907 -132045876 - B3A SINE B2 -16 182 5 8 795 394 270 0 10 chr3 27553953 27554054 -132045729 + Lx9 LINE L1 6959 7058 -586 8 795 333 0 0 0 chr3 27554976 27555013 -132044770 + (CA)n Simple_repeat Simple_repeat 1 37 0 8 795 226 272 50 71 chr3 27555051 27555150 -132044633 + B4 SINE B4 196 292 0 8 795 21 57 0 0 chr3 27555151 27555186 -132044597 + AT_rich Low_complexity Low_complexity 1 35 0 9 795 24 53 0 0 chr3 27555608 27555646 -132044137 + AT_rich Low_complexity Low_complexity 1 38 0 9 795 192 40 0 0 chr3 27556422 27556447 -132043336 + (TG)n Simple_repeat Simple_repeat 2 26 0 9 795 756 326 37 7 chr3 27556493 27556762 -132043021 - B4A SINE B4 -15 277 1 9 795 673 239 105 11 chr3 27556807 27556997 -132042786 + ID_B1 SINE B4 3 210 -14 9 795 252 0 0 0 chr3 27557001 27557029 -132042754 + (TAAA)n Simple_repeat Simple_repeat 4 31 0 9 795 244 271 30 50 chr3 27557933 27558034 -132041749 - BC1_Mm scRNA scRNA -48 104 6 9 795 443 301 40 34 chr3 27558041 27558189 -132041594 - B1F1 SINE Alu 0 149 1 9 795 222 197 113 70 chr3 27558208 27558279 -132041504 + ID4 SINE ID 4 77 -6 9 795 453 186 388 14 chr3 27558217 27558364 -132041419 + B3 SINE B2 15 216 0 9 795 21 0 0 0 chr3 27558593 27558614 -132041169 + AT_rich Low_complexity Low_complexity 1 21 0 1 795 526 322 86 50 chr3 27558659 27558881 -132040902 - B4A SINE B4 -55 237 8 1 795 231 333 0 0 chr3 27559277 27559352 -132040431 + ID4 SINE ID 4 78 -5 1 795 231 207 35 35 chr3 27559936 27560021 -132039762 + (CCCA)n Simple_repeat Simple_repeat 1 85 0 1 795 233 315 21 43 chr3 27561114 27561207 -132038576 + MT2B LTR ERVL 169 259 -342 1 795 630 212 18 0 chr3 27561127 27561240 -132038543 + B1_Mur4 SINE Alu 28 142 -8 1 795 800 227 84 25 chr3 27562649 27562852 -132036931 + ID_B1 SINE B4 4 218 -6 1 795 243 0 0 0 chr3 27562887 27562914 -132036869 + (CAGA)n Simple_repeat Simple_repeat 2 28 0 1 795 631 111 81 27 chr3 27565369 27565480 -132034303 + B1_Mus1 SINE Alu 32 148 0 1 795 269 233 54 14 chr3 27567240 27567314 -132032469 - B3A SINE B2 -65 133 57 1 795 763 257 93 65 chr3 27567341 27567620 -132032163 + B4A SINE B4 6 292 0 1 795 657 204 189 5 chr3 27567707 27567885 -132031898 + B3 SINE B2 17 209 -7 1 795 498 325 66 43 chr3 27568647 27568904 -132030879 + LTR40c LTR ERVL 151 413 -52 1 795 383 231 13 0 chr3 27570412 27570490 -132029293 - B3A SINE B2 -118 80 2 1 795 313 200 62 0 chr3 27570740 27570805 -132028978 + ID2 SINE ID 1 69 -14 1 795 459 0 0 0 chr3 27572365 27572416 -132027367 + (CA)n Simple_repeat Simple_repeat 1 51 0 1 795 198 0 0 0 chr3 27572932 27572954 -132026829 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 1 795 793 71 107 0 chr3 27573386 27573498 -132026285 - B1_Mus1 SINE Alu -10 138 15 1 795 310 187 120 86 chr3 27573421 27573538 -132026245 - MT2B2 LTR ERVL -327 257 137 1 795 1233 225 63 47 chr3 27575311 27575777 -132024006 + L1_Mur3 LINE L1 166 683 -7029 1 795 559 280 86 45 chr3 27577089 27577310 -132022473 + B4A SINE B4 1 230 -62 1 795 198 0 0 0 chr3 27577770 27577792 -132021991 + (T)n Simple_repeat Simple_repeat 1 22 0 1 795 1122 57 43 0 chr3 27577792 27577932 -132021851 - B1_Mm SINE Alu 0 147 2 1 795 1674 26 5 0 chr3 27578089 27578280 -132021503 + B2_Mm1t SINE B2 2 193 0 1 795 466 264 99 7 chr3 27579213 27579354 -132020429 - MER3 DNA MER1_type -51 158 5 1 795 457 278 123 5 chr3 27579397 27579592 -132020191 - ID_B1 SINE B4 -2 222 5 1 795 387 187 40 99 chr3 27580012 27580113 -132019670 + PB1D10 SINE Alu 21 115 -2 1 795 658 192 12 0 chr3 27580248 27580409 -132019374 + (TA)n Simple_repeat Simple_repeat 2 164 0 1 795 288 0 0 0 chr3 27580521 27580553 -132019230 + (TA)n Simple_repeat Simple_repeat 2 33 0 1 795 355 328 57 8 chr3 27581459 27581582 -132018201 + MIRc SINE MIR 127 255 -13 1 795 21 0 0 0 chr3 27582092 27582113 -132017670 + AT_rich Low_complexity Low_complexity 1 21 0 1 795 238 282 12 25 chr3 27582144 27582224 -132017559 + ID2 SINE ID 3 81 -2 1 795 329 0 0 24 chr3 27584534 27584576 -132015207 + (TAGA)n Simple_repeat Simple_repeat 2 42 0 1 795 1094 75 20 0 chr3 27585036 27585182 -132014601 + B1_Mur4 SINE Alu 1 149 -1 1 795 816 234 88 112 chr3 27586478 27586772 -132013011 + B4A SINE B4 6 292 0 1 795 216 221 44 0 chr3 27586772 27586840 -132012943 + (CA)n Simple_repeat Simple_repeat 1 71 0 1 795 300 269 17 3 chr3 27587212 27587316 -132012467 - MLT1A LTR MaLR -17 391 285 1 795 404 291 102 8 chr3 27587723 27587851 -132011932 + RSINE1 SINE B4 1 140 -25 1 795 423 0 0 0 chr3 27587853 27587900 -132011883 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 795 381 271 90 8 chr3 27588068 27588202 -132011581 + ID_B1 SINE B4 80 224 0 1 795 224 271 0 0 chr3 27588512 27588560 -132011223 + GA-rich Low_complexity Low_complexity 1 48 0 1 795 425 296 0 36 chr3 27588580 27588720 -132011063 + ID_B1 SINE B4 77 211 -13 1 795 24 0 0 0 chr3 27588734 27588758 -132011025 + AT_rich Low_complexity Low_complexity 1 24 0 1 795 304 316 43 57 chr3 27589526 27589667 -132010116 + RSINE1 SINE B4 27 165 0 1 795 842 226 113 0 chr3 27589745 27589931 -132009852 + ID_B1 SINE B4 12 218 -6 1 795 316 234 71 53 chr3 27590365 27590478 -132009305 - L2c LINE L2 -2 3385 3271 1 795 677 258 13 0 chr3 27590922 27591077 -132008706 + B3A SINE B2 1 157 -41 1 795 801 264 9 14 chr3 27592970 27593185 -132006598 - ID_B1 SINE B4 -9 215 2 1 795 474 65 0 0 chr3 27594010 27594072 -132005711 + (CCA)n Simple_repeat Simple_repeat 1 62 0 1 795 367 315 61 15 chr3 27594073 27594205 -132005578 - RSINE1 SINE B4 -25 140 3 1 795 241 192 19 19 chr3 27594276 27594329 -132005454 + GA-rich Low_complexity Low_complexity 5 57 0 1 795 751 208 40 0 chr3 27595779 27595928 -132003855 - B3 SINE B2 -60 156 2 1 795 340 261 147 18 chr3 27596374 27596513 -132003270 + B1F1 SINE Alu 2 144 -5 1 795 673 230 102 14 chr3 27596669 27596885 -132002898 + B4A SINE B4 1 235 -57 1 795 424 289 29 72 chr3 27598123 27598261 -132001522 + B1F SINE Alu 10 141 -8 1 795 367 196 49 7 chr3 27598283 27598427 -132001356 + (TA)n Simple_repeat Simple_repeat 2 151 0 1 795 582 256 82 22 chr3 27599780 27599964 -131999819 + ID_B1 SINE B4 5 199 -25 1 795 207 0 0 0 chr3 27600612 27600635 -131999148 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 795 860 246 123 133 chr3 27600690 27601009 -131998774 - MTD LTR MaLR -14 405 85 1 795 1248 47 0 0 chr3 27601009 27601157 -131998626 - B1_Mus1 SINE Alu 0 148 1 1 795 860 246 123 133 chr3 27601157 27601244 -131998539 - MTD LTR MaLR -335 84 3 1 795 379 273 80 38 chr3 27601426 27601639 -131998144 + ID_B1 SINE B4 1 222 -2 1 795 337 196 128 49 chr3 27601668 27601770 -131998013 + RSINE1 SINE B4 3 112 -53 1 795 200 100 75 0 chr3 27601784 27601824 -131997959 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 1 795 1249 34 0 7 chr3 27601824 27601972 -131997811 - B1_Mm SINE Alu 0 147 1 1 795 405 283 61 68 chr3 27602447 27602595 -131997188 - RSINE1 SINE B4 -17 148 2 1 795 364 355 12 40 chr3 27602744 27602917 -131996866 - B4A SINE B4 -124 168 1 1 795 574 249 46 51 chr3 27605146 27605341 -131994442 + B3A SINE B2 2 195 -3 1 795 438 250 181 25 chr3 27605437 27605675 -131994108 + B4A SINE B4 1 275 -17 1 795 663 178 0 104 chr3 27606147 27606162 -131993621 - B1_Mur2 SINE Alu -20 129 115 1 795 741 23 0 0 chr3 27606162 27606249 -131993534 + (TA)n Simple_repeat Simple_repeat 1 87 0 1 795 663 178 0 104 chr3 27606249 27606377 -131993406 - B1_Mur2 SINE Alu -35 114 1 1 795 365 263 147 0 chr3 27606602 27606697 -131993086 - B1F2 SINE Alu -40 109 1 1 795 384 22 0 0 chr3 27606997 27607042 -131992741 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 795 398 257 70 21 chr3 27607163 27607306 -131992477 - MER3 DNA MER1_type -40 169 20 1 795 319 136 233 22 chr3 27607485 27607575 -131992208 + PB1D7 SINE Alu 4 112 -8 1 795 25 31 0 0 chr3 27608962 27608994 -131990789 + GC_rich Low_complexity Low_complexity 1 32 0 1 795 23 0 0 0 chr3 27609067 27609090 -131990693 + GC_rich Low_complexity Low_complexity 1 23 0 1 795 27 49 0 0 chr3 27609157 27609198 -131990585 + GC_rich Low_complexity Low_complexity 1 41 0 1 795 22 0 0 0 chr3 27609477 27609499 -131990284 + GC_rich Low_complexity Low_complexity 1 22 0 1 795 265 245 0 30 chr3 27610084 27610185 -131989598 + (CCG)n Simple_repeat Simple_repeat 3 100 0 1 795 341 277 83 51 chr3 27610726 27610882 -131988901 - RSINE1 SINE B4 -2 163 3 1 795 702 161 11 22 chr3 27613439 27613484 -131986299 + polypurine Low_complexity Low_complexity 1 45 0 1 795 1089 101 11 11 chr3 27613484 27613664 -131986119 + (GGA)n Simple_repeat Simple_repeat 1 180 0 1 795 702 161 11 22 chr3 27613664 27613796 -131985987 + GA-rich Low_complexity Low_complexity 46 176 0 1 795 931 268 39 8 chr3 27613910 27614170 -131985613 - B4 SINE B4 -23 269 2 1 795 24 0 0 0 chr3 27614767 27614791 -131984992 + AT_rich Low_complexity Low_complexity 1 24 0 1 795 869 248 5 27 chr3 27614839 27615059 -131984724 + MTE2b LTR MaLR 3 217 -162 1 795 211 53 24 73 chr3 27615065 27615106 -131984677 + T-rich Low_complexity Low_complexity 5 43 0 1 795 663 171 7 52 chr3 27615107 27615243 -131984540 - B1_Mus2 SINE Alu -3 144 15 1 795 360 0 0 0 chr3 27615243 27615283 -131984500 + (CACAC)n Simple_repeat Simple_repeat 3 42 0 1 795 553 245 142 0 chr3 27615286 27615441 -131984342 + MTE2b LTR MaLR 201 377 -2 1 795 231 283 120 19 chr3 27615803 27615911 -131983872 - MLT1A LTR MaLR 0 374 256 1 795 228 208 236 36 chr3 27616001 27616111 -131983672 - MLT1A LTR MaLR -224 141 10 1 795 23 33 0 0 chr3 27616297 27616327 -131983456 + AT_rich Low_complexity Low_complexity 1 30 0 1 795 812 235 51 14 chr3 27617352 27617568 -131982215 - ID_B1 SINE B4 0 224 1 1 795 352 294 84 53 chr3 27618867 27619057 -131980726 + L4 LINE RTE 1654 1849 -180 1 795 1247 212 89 12 chr3 27619412 27619907 -131979876 - Lx9 LINE L1 0 7644 7075 1 795 976 104 22 0 chr3 27619909 27620044 -131979739 - B1_Mur4 SINE Alu -11 139 2 1 795 605 239 103 30 chr3 27620317 27620521 -131979262 - MLT2D LTR ERVL -105 309 93 1 795 449 281 162 12 chr3 27620937 27621110 -131978673 - ERVL-int LTR ERVL -4836 921 723 1 795 319 263 32 0 chr3 27621523 27621618 -131978165 - MLT2B4 LTR ERVL -410 146 49 1 795 588 279 14 21 chr3 27622208 27622351 -131977432 + RSINE1 SINE B4 3 144 -21 1 795 384 71 0 0 chr3 27622384 27622440 -131977343 + (CA)n Simple_repeat Simple_repeat 1 56 0 1 795 316 221 113 17 chr3 27623548 27623663 -131976120 + RMER15 LTR ERVL 435 560 -15 1 795 590 253 192 5 chr3 27623977 27624164 -131975619 - ID_B1 SINE B4 0 224 3 2 795 182 355 47 24 chr3 27624184 27624311 -131975472 - L2b LINE L2 -299 3076 2947 2 795 1197 221 88 38 chr3 27624368 27624711 -131975072 + ORR1D2 LTR MaLR 11 370 0 2 795 305 282 88 26 chr3 27625214 27625327 -131974456 - PB1D7 SINE Alu 0 120 1 2 795 216 86 0 0 chr3 27625356 27625391 -131974392 + (TG)n Simple_repeat Simple_repeat 1 35 0 2 795 354 169 0 0 chr3 27625461 27625526 -131974257 + CT-rich Low_complexity Low_complexity 3 67 0 2 795 414 320 97 6 chr3 27625528 27625704 -131974079 - B4A SINE B4 -60 232 41 2 795 298 271 115 0 chr3 27626019 27626141 -131973642 - MER121 Unknown Unknown -185 227 92 2 795 500 270 162 0 chr3 27626250 27626435 -131973348 + ID_B1 SINE B4 1 215 -9 2 795 192 77 0 0 chr3 27626435 27626461 -131973322 + (ATG)n Simple_repeat Simple_repeat 2 27 0 2 795 425 253 6 0 chr3 27626542 27626720 -131973063 + (TG)n Simple_repeat Simple_repeat 2 180 0 2 795 595 181 0 13 chr3 27626748 27626905 -131972878 + (TG)n Simple_repeat Simple_repeat 1 155 0 2 795 317 93 0 18 chr3 27627213 27627268 -131972515 + (GGA)n Simple_repeat Simple_repeat 3 56 0 2 795 180 176 0 56 chr3 27628259 27628349 -131971434 + G-rich Low_complexity Low_complexity 4 88 0 2 795 531 0 0 0 chr3 27628369 27628428 -131971355 + (GA)n Simple_repeat Simple_repeat 2 60 0 2 795 569 304 13 0 chr3 27628484 27628642 -131971141 + RSINE1 SINE B4 3 162 -3 2 795 264 186 0 0 chr3 27628661 27628720 -131971063 + (CA)n Simple_repeat Simple_repeat 2 60 0 2 795 253 283 97 19 chr3 27629178 27629196 -131970587 - B3A SINE B2 -30 168 2 2 795 534 241 15 29 chr3 27629196 27629333 -131970450 - RSINE1 SINE B4 -28 137 3 2 795 201 74 0 0 chr3 27629531 27629558 -131970225 + (CAT)n Simple_repeat Simple_repeat 2 28 0 2 795 261 0 0 0 chr3 27629619 27629648 -131970135 + (TG)n Simple_repeat Simple_repeat 2 30 0 2 795 235 382 0 26 chr3 27629658 27629736 -131970047 - RSINE1 SINE B4 -12 153 78 2 795 480 18 0 0 chr3 27629831 27629888 -131969895 + (TG)n Simple_repeat Simple_repeat 2 58 0 2 795 259 310 0 0 chr3 27629889 27629960 -131969823 - RSINE1 SINE B4 -91 74 4 2 795 227 219 31 0 chr3 27630006 27630070 -131969713 + CT-rich Low_complexity Low_complexity 1 66 0 2 795 269 265 71 24 chr3 27630070 27630155 -131969628 - PB1D7 SINE Alu -5 115 27 2 795 502 305 17 47 chr3 27630095 27630267 -131969516 - ID_B1 SINE B4 -57 167 1 2 795 229 308 144 66 chr3 27630330 27630588 -131969195 - L1M5 LINE L1 -1261 4885 4605 2 795 1515 244 42 77 chr3 27630588 27631111 -131968672 - RLTR16 LTR ERVK 0 505 1 2 795 229 308 144 66 chr3 27631111 27631172 -131968611 - L1M5 LINE L1 -1542 4604 4541 2 795 405 271 30 0 chr3 27631331 27631464 -131968319 - L1MD LINE L1 -1890 4256 4120 2 795 24 32 0 0 chr3 27631584 27631615 -131968168 + AT_rich Low_complexity Low_complexity 1 31 0 2 795 464 48 16 0 chr3 27631896 27631959 -131967824 + (TC)n Simple_repeat Simple_repeat 1 64 0 2 795 221 235 316 0 chr3 27631961 27632059 -131967724 - B1_Mur4 SINE Alu -17 133 5 2 795 716 246 84 0 chr3 27632077 27632108 -131967675 - B3 SINE B2 -7 209 173 2 795 183 100 0 0 chr3 27632108 27632138 -131967645 + (TATG)n Simple_repeat Simple_repeat 4 33 0 2 795 716 246 84 0 chr3 27632138 27632297 -131967486 - B3 SINE B2 -44 172 4 2 795 547 250 51 40 chr3 27632978 27633153 -131966630 + L1MB5 LINE L1 5870 6046 -128 2 795 329 348 38 31 chr3 27633239 27633399 -131966384 + RSINE1 SINE B4 2 162 -3 2 795 423 260 0 0 chr3 27633412 27633562 -131966221 + (CA)n Simple_repeat Simple_repeat 1 150 0 2 795 738 207 0 0 chr3 27633588 27633767 -131966016 + (CA)n Simple_repeat Simple_repeat 2 180 0 2 795 915 236 13 18 chr3 27634363 27634587 -131965196 + ID_B1 SINE B4 2 224 0 2 795 201 147 0 29 chr3 27635303 27635338 -131964445 + G-rich Low_complexity Low_complexity 1 34 0 2 795 369 109 0 0 chr3 27635607 27635662 -131964121 + (A)n Simple_repeat Simple_repeat 1 55 0 2 795 418 165 165 0 chr3 27635741 27635832 -131963951 + ID_B1 SINE B4 81 186 -38 2 795 964 129 164 46 chr3 27636327 27636522 -131963261 + URR1B DNA MER1_type 5 222 -3 2 795 397 322 5 103 chr3 27636792 27636986 -131962797 - MTEa LTR MaLR -202 177 3 2 795 235 246 46 0 chr3 27636995 27637060 -131962723 - L1MC4 LINE L1 -1204 6838 6771 2 795 523 257 120 22 chr3 27637066 27637249 -131962534 + ID_B1 SINE B4 8 208 -16 2 795 456 19 0 0 chr3 27637249 27637302 -131962481 + (GA)n Simple_repeat Simple_repeat 1 53 0 2 795 294 125 0 0 chr3 27637383 27637431 -131962352 + (GGGA)n Simple_repeat Simple_repeat 3 50 0 2 795 1085 124 0 11 chr3 27637446 27637626 -131962157 + (GGAA)n Simple_repeat Simple_repeat 3 180 0 2 795 361 216 14 0 chr3 27637686 27637760 -131962023 - L1MC4 LINE L1 -1273 6769 6695 2 795 362 312 162 22 chr3 27637755 27638076 -131961707 + L1M5 LINE L1 5419 5784 -456 2 795 195 42 0 0 chr3 27638312 27638336 -131961447 + (TTG)n Simple_repeat Simple_repeat 1 24 0 2 795 1204 258 64 3 chr3 27638349 27638706 -131961077 - MTD LTR MaLR -40 379 1 2 795 321 246 45 141 chr3 27638826 27638867 -131960916 - MTE2a LTR MaLR 0 419 386 2 795 422 244 85 30 chr3 27638867 27639066 -131960717 + B3 SINE B2 1 210 -6 2 795 432 244 57 205 chr3 27639066 27639406 -131960377 - MTE2a LTR MaLR -34 385 65 2 795 308 64 0 21 chr3 27641385 27641433 -131958350 + (TG)n Simple_repeat Simple_repeat 2 48 0 2 795 484 283 102 30 chr3 27641474 27641671 -131958112 - B4A SINE B4 -55 237 27 2 795 366 143 0 0 chr3 27643466 27643529 -131956254 + (TG)n Simple_repeat Simple_repeat 2 64 0 2 795 1794 123 91 23 chr3 27643906 27644290 -131955493 + RMER17C LTR ERVK 1 410 0 2 795 841 134 42 0 chr3 27644495 27644637 -131955146 - B1_Mur4 SINE Alu -1 149 2 2 795 191 374 12 0 chr3 27645332 27645415 -131954368 - L2a LINE L2 -30 3396 3313 2 795 946 252 27 5 chr3 27645498 27645717 -131954066 + ID_B1 SINE B4 1 224 0 2 795 617 218 65 0 chr3 27646647 27646771 -131953012 + RSINE1 SINE B4 3 134 -31 2 795 995 275 50 85 chr3 27646857 27647234 -131952549 + MTE2b LTR MaLR 16 379 0 2 795 425 314 52 11 chr3 27647234 27647401 -131952382 - ID_B1 SINE B4 -18 206 33 2 795 210 167 0 0 chr3 27647447 27647483 -131952300 + A-rich Low_complexity Low_complexity 1 36 0 2 795 550 301 66 19 chr3 27647533 27647804 -131951979 - B4A SINE B4 -8 284 1 2 795 308 336 0 111 chr3 27647981 27648098 -131951685 - ID_B1 SINE B4 -33 191 88 2 795 1602 260 50 81 chr3 27648374 27648393 -131951390 - Lx8 LINE L1 -2 7471 7457 2 795 767 215 14 7 chr3 27648393 27648538 -131951245 + B1_Mus1 SINE Alu 2 147 -1 2 795 1602 260 50 81 chr3 27648538 27648878 -131950905 - Lx8 LINE L1 -17 7456 7127 2 795 1101 75 7 0 chr3 27648878 27649024 -131950759 - B1_Mm SINE Alu 0 147 1 2 795 1602 260 50 81 chr3 27649024 27649228 -131950555 - Lx8 LINE L1 -347 7126 6925 2 795 658 81 66 23 chr3 27649479 27649785 -131949998 + (CA)n Simple_repeat Simple_repeat 1 319 0 2 795 736 106 35 12 chr3 27649859 27650031 -131949752 + (CA)n Simple_repeat Simple_repeat 1 176 0 2 795 442 276 8 8 chr3 27650274 27650391 -131949392 - PB1D10 SINE Alu 0 117 1 2 795 471 316 193 22 chr3 27650633 27651047 -131948736 - MLT1F LTR MaLR -3 545 61 2 795 306 116 69 42 chr3 27652059 27652126 -131947657 - B1F1 SINE Alu 0 149 81 2 795 2146 166 41 24 chr3 27652126 27652539 -131947244 + MTC LTR MaLR 2 421 0 2 795 637 277 6 25 chr3 27652539 27652702 -131947081 - ID_B1 SINE B4 -60 164 5 2 795 2199 151 37 12 chr3 27653129 27653532 -131946251 - MTC LTR MaLR -8 413 1 2 795 1340 252 41 14 chr3 27654732 27655094 -131944689 - Lx8 LINE L1 -89 7384 7013 2 795 955 209 242 50 chr3 27655104 27655301 -131944482 - ORR1C2 LTR MaLR 0 384 167 2 795 348 24 0 0 chr3 27655301 27655342 -131944441 + (GA)n Simple_repeat Simple_repeat 1 41 0 2 795 955 209 242 50 chr3 27655342 27655466 -131944317 - ORR1C2 LTR MaLR -218 166 1 2 795 838 247 71 20 chr3 27655483 27655799 -131943984 - Lx8 LINE L1 -1673 5971 5612 2 795 1003 222 14 0 chr3 27655814 27656026 -131943757 - ID_B1 SINE B4 -9 215 1 2 795 316 305 13 65 chr3 27656053 27656187 -131943596 + MLT-int LTR MaLR 11 146 -1589 2 796 627 256 80 18 chr3 27656281 27656444 -131943339 + B3 SINE B2 20 192 -24 2 796 495 0 0 0 chr3 27656457 27656512 -131943271 + (TCTA)n Simple_repeat Simple_repeat 3 57 0 2 796 2684 300 68 24 chr3 27656519 27657490 -131942293 - Lx8 LINE L1 -11 7462 6449 2 796 555 88 0 0 chr3 27658521 27658612 -131941171 + (TC)n Simple_repeat Simple_repeat 2 92 0 2 796 573 307 69 64 chr3 27658737 27658939 -131940844 - ID_B1 SINE B4 -16 208 6 2 796 951 221 35 0 chr3 27658957 27659156 -131940627 - B3 SINE B2 -7 209 4 2 796 555 274 95 59 chr3 27659620 27660017 -131939766 + Lx8 LINE L1 6848 7448 -25 2 796 1087 268 25 35 chr3 27660085 27660371 -131939412 + B4A SINE B4 8 290 -2 2 796 1453 250 121 23 chr3 27660619 27660979 -131938804 + Lx8 LINE L1 6944 7344 -129 2 796 290 45 0 22 chr3 27660979 27661024 -131938759 + (CAAA)n Simple_repeat Simple_repeat 2 45 0 2 796 1453 250 121 23 chr3 27661024 27661142 -131938641 + Lx8 LINE L1 7345 7468 -5 2 796 279 0 0 0 chr3 27661143 27661174 -131938609 + (CA)n Simple_repeat Simple_repeat 2 32 0 2 796 298 233 219 29 chr3 27661207 27661344 -131938439 - MLT1A0 LTR MaLR -202 163 1 2 796 307 244 63 13 chr3 27661450 27661529 -131938254 - RSINE1 SINE B4 -79 86 4 2 796 648 264 0 0 chr3 27661546 27661690 -131938093 - ID_B1 SINE B4 0 224 81 2 796 247 304 106 43 chr3 27661769 27661910 -131937873 + L2b LINE L2 3226 3375 0 2 796 213 372 0 0 chr3 27662123 27662217 -131937566 + (TG)n Simple_repeat Simple_repeat 1 94 0 2 796 248 282 38 38 chr3 27662260 27662347 -131937436 + MTE2a LTR MaLR 6 92 -287 2 796 838 272 46 21 chr3 27662353 27662638 -131937145 + MTE2a LTR MaLR 58 349 -30 2 796 188 34 0 33 chr3 27662645 27662675 -131937108 + (TTTTG)n Simple_repeat Simple_repeat 1 29 0 2 796 466 261 0 9 chr3 27662712 27662824 -131936959 - B4A SINE B4 -53 239 129 2 796 35 0 0 0 chr3 27662949 27662984 -131936799 + AT_rich Low_complexity Low_complexity 1 35 0 3 796 660 320 59 25 chr3 27663172 27663409 -131936374 + B4 SINE B4 48 292 0 3 796 654 104 0 0 chr3 27663420 27663516 -131936267 + (GA)n Simple_repeat Simple_repeat 1 96 0 3 796 387 0 0 0 chr3 27664414 27664457 -131935326 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 796 413 303 94 81 chr3 27665950 27666259 -131933524 + ORR1E LTR MaLR 46 358 -1 3 796 1999 300 127 104 chr3 27666288 27666816 -131932967 + ORR1E-int LTR MaLR 22 515 -1065 3 796 409 306 0 52 chr3 27666816 27666971 -131932812 + RSINE1 SINE B4 2 148 -17 3 796 1999 300 127 104 chr3 27666971 27667920 -131931863 + ORR1E-int LTR MaLR 516 1532 -48 3 796 453 296 99 81 chr3 27667933 27668267 -131931516 + ORR1E LTR MaLR 19 358 -1 3 796 207 0 0 0 chr3 27668279 27668302 -131931481 + (TTTTA)n Simple_repeat Simple_repeat 1 23 0 3 796 316 252 180 0 chr3 27668908 27669019 -131930764 - L1MB8 LINE L1 -275 5903 5773 3 796 304 164 32 16 chr3 27669365 27669427 -131930356 - L1MB8 LINE L1 -565 5619 5557 3 796 481 254 14 29 chr3 27669482 27669620 -131930163 + ID_B1 SINE B4 84 219 -5 3 796 1016 229 19 28 chr3 27669628 27669844 -131929939 + B3 SINE B2 1 214 -2 3 796 1137 89 0 0 chr3 27670250 27670396 -131929387 - B1_Mus1 SINE Alu -1 147 2 3 796 1055 209 31 0 chr3 27670427 27670623 -131929160 - B3 SINE B2 -14 202 1 3 796 323 114 67 120 chr3 27670774 27670924 -131928859 - HAL1-2a_MD LINE L1 -518 2506 2365 3 796 1153 35 21 0 chr3 27671370 27671512 -131928271 + B1_Mm SINE Alu 3 147 0 3 796 297 0 0 0 chr3 27671512 27671545 -131928238 + (CAAAAA)n Simple_repeat Simple_repeat 6 38 0 3 796 251 274 83 6 chr3 27671595 27671698 -131928085 + MIR SINE MIR 63 177 -99 3 796 379 59 11 76 chr3 27672568 27672660 -131927123 + (CAA)n Simple_repeat Simple_repeat 2 87 0 3 796 620 250 57 62 chr3 27673055 27673264 -131926519 - MTE2a LTR MaLR 0 379 172 3 796 3569 188 206 30 chr3 27673297 27674153 -131925630 - RMER1B Other Other 0 1066 61 3 796 383 314 57 31 chr3 27674256 27674450 -131925333 - MTE2a LTR MaLR -220 199 1 3 796 825 286 51 62 chr3 27674478 27674850 -131924933 + ORR1D2 LTR MaLR 3 370 0 3 796 931 266 9 5 chr3 27674955 27675174 -131924609 + ID_B1 SINE B4 3 222 -2 3 796 248 300 115 54 chr3 27675192 27675340 -131924443 + RSINE1 SINE B4 9 165 0 3 796 267 324 121 23 chr3 27675508 27675682 -131924101 + L1MA5 LINE L1 6065 6255 -45 3 796 1037 72 0 0 chr3 27675891 27676030 -131923753 + B1_Mus2 SINE Alu 9 147 0 3 796 411 186 0 0 chr3 27676033 27676135 -131923648 + A-rich Low_complexity Low_complexity 1 102 0 3 796 549 142 225 0 chr3 27676217 27676337 -131923446 - B1_Mus2 SINE Alu 0 147 1 3 796 245 212 14 43 chr3 27676372 27676441 -131923342 + PB1D7 SINE Alu 50 116 -4 3 796 667 256 159 36 chr3 27677202 27677453 -131922330 - B4 SINE B4 -6 286 5 3 796 418 361 0 0 chr3 27678494 27678613 -131921170 + RSINE1 SINE B4 2 120 -45 3 796 288 0 0 0 chr3 27678613 27678645 -131921138 + (CA)n Simple_repeat Simple_repeat 2 33 0 3 796 742 231 217 4 chr3 27678728 27678958 -131920825 - B4 SINE B4 -13 279 1 3 796 25 0 0 0 chr3 27679611 27679636 -131920147 + AT_rich Low_complexity Low_complexity 1 25 0 3 796 455 148 11 0 chr3 27679637 27679725 -131920058 + (TG)n Simple_repeat Simple_repeat 1 89 0 3 796 587 279 53 77 chr3 27679796 27680095 -131919688 + MLT1C LTR MaLR 35 326 -141 3 796 273 360 0 51 chr3 27680144 27680261 -131919522 + MLT1B LTR MaLR 272 382 -8 3 796 688 133 0 12 chr3 27680307 27680475 -131919308 + (TGG)n Simple_repeat Simple_repeat 3 168 0 3 796 437 202 19 0 chr3 27680476 27680580 -131919203 + G-rich Low_complexity Low_complexity 4 109 0 3 796 737 141 0 6 chr3 27680580 27680759 -131919024 + (TGG)n Simple_repeat Simple_repeat 2 179 0 3 796 251 315 132 16 chr3 27681703 27681832 -131917951 + RSINE1 SINE B4 2 145 -20 3 796 894 226 31 5 chr3 27683417 27683613 -131916170 - B3 SINE B2 -5 211 11 3 796 315 0 0 0 chr3 27683645 27683680 -131916103 + (TG)n Simple_repeat Simple_repeat 2 36 0 3 796 429 54 0 0 chr3 27683680 27683735 -131916048 + (TA)n Simple_repeat Simple_repeat 1 56 0 3 796 623 195 154 0 chr3 27683842 27683965 -131915818 + B1_Mur4 SINE Alu 2 143 -7 3 796 207 0 0 0 chr3 27683965 27683988 -131915795 + (CCAA)n Simple_repeat Simple_repeat 2 24 0 3 796 413 110 14 0 chr3 27683990 27684063 -131915720 + (CA)n Simple_repeat Simple_repeat 2 75 0 3 796 342 0 0 0 chr3 27684159 27684197 -131915586 + (TG)n Simple_repeat Simple_repeat 2 39 0 3 796 554 189 108 0 chr3 27684204 27684315 -131915468 - B3A SINE B2 -57 141 19 3 796 2141 179 88 38 chr3 27684427 27684685 -131915098 - RLTR12B LTR ERVK 0 528 264 3 796 1121 0 0 8 chr3 27684685 27684815 -131914968 + (TCTCCC)n Simple_repeat Simple_repeat 4 132 0 3 796 2141 179 88 38 chr3 27684815 27685057 -131914726 - RLTR12B LTR ERVK -265 263 5 3 796 489 265 70 6 chr3 27685300 27685471 -131914312 + ID_B1 SINE B4 1 182 -42 3 796 564 53 0 0 chr3 27685889 27685965 -131913818 + (TG)n Simple_repeat Simple_repeat 2 77 0 3 796 348 301 72 53 chr3 27686052 27686315 -131913468 + Tigger15a DNA TcMar 139 406 -309 3 796 322 310 125 14 chr3 27686568 27686712 -131913071 + RSINE1 SINE B4 4 163 -2 3 796 425 322 7 53 chr3 27686829 27686980 -131912803 + B4 SINE B4 50 193 -99 3 796 259 306 177 29 chr3 27687243 27687418 -131912365 + MER63A DNA AcHobo 4 204 -6 3 796 206 291 0 0 chr3 27687728 27687783 -131912000 + (TG)n Simple_repeat Simple_repeat 1 55 0 3 796 300 290 0 51 chr3 27687795 27687893 -131911890 - B4A SINE B4 -14 278 186 3 796 2713 166 14 14 chr3 27687942 27688444 -131911339 - RLTR20B3 LTR ERVK -75 502 1 3 796 464 277 43 80 chr3 27688446 27688634 -131911149 - B4 SINE B4 -110 182 2 3 796 668 259 141 26 chr3 27688703 27688972 -131910811 + ORR1D1 LTR MaLR 3 302 -72 3 796 624 252 70 116 chr3 27690175 27690476 -131909307 + B4A SINE B4 2 288 -4 3 796 256 369 0 9 chr3 27691104 27691216 -131908567 + MER5A1 DNA MER1_type 14 124 -42 3 796 1240 54 0 0 chr3 27691539 27691686 -131908097 - B1_Mus1 SINE Alu 0 148 2 3 796 2863 292 30 4 chr3 27691856 27692623 -131907160 + Lx8 LINE L1 6506 7292 -181 3 796 1479 234 46 22 chr3 27692682 27693049 -131906734 + MTEa LTR MaLR 1 376 -3 3 796 313 321 6 72 chr3 27693449 27693630 -131906153 + MTEb LTR MaLR 23 191 -188 3 796 465 19 0 0 chr3 27694100 27694154 -131905629 + (TTA)n Simple_repeat Simple_repeat 3 56 0 3 796 1798 167 78 17 chr3 27694342 27694689 -131905094 + MTC LTR MaLR 1 368 -53 3 796 250 254 0 0 chr3 27695198 27695253 -131904530 + B4A SINE B4 1 55 -237 3 796 223 244 0 0 chr3 27695267 27695308 -131904475 + G-rich Low_complexity Low_complexity 6 46 0 3 796 804 139 35 0 chr3 27695308 27695480 -131904303 + GA-rich Low_complexity Low_complexity 1 178 0 3 796 206 218 36 0 chr3 27695485 27695540 -131904243 + (TA)n Simple_repeat Simple_repeat 1 57 0 3 796 324 0 0 0 chr3 27695639 27695675 -131904108 + (CA)n Simple_repeat Simple_repeat 2 37 0 3 796 219 139 0 0 chr3 27695811 27695847 -131903936 + (T)n Simple_repeat Simple_repeat 1 36 0 3 796 417 280 61 72 chr3 27695980 27696161 -131903622 - B4A SINE B4 -15 277 99 3 796 234 0 0 0 chr3 27696163 27696189 -131903594 + (T)n Simple_repeat Simple_repeat 1 26 0 3 796 2320 148 35 5 chr3 27696224 27696625 -131903158 - MTC LTR MaLR -8 413 1 3 796 258 32 0 0 chr3 27696988 27697019 -131902764 + (TG)n Simple_repeat Simple_repeat 1 31 0 3 796 633 262 14 7 chr3 27697019 27697165 -131902618 - B3A SINE B2 -44 154 8 3 796 914 293 97 20 chr3 27697860 27698212 -131901571 - MTE2b LTR MaLR 0 379 1 3 796 189 0 0 0 chr3 27698614 27698635 -131901148 + (CA)n Simple_repeat Simple_repeat 2 22 0 3 796 588 217 149 63 chr3 27699314 27699535 -131900248 - MTD LTR MaLR -14 405 166 3 796 605 296 34 29 chr3 27699769 27699978 -131899805 - ID_B1 SINE B4 -14 210 1 3 796 229 313 15 0 chr3 27699979 27700046 -131899737 + (CA)n Simple_repeat Simple_repeat 1 68 0 3 796 434 272 9 0 chr3 27700644 27700758 -131899025 + PB1D7 SINE Alu 1 115 -5 3 796 296 227 11 0 chr3 27700760 27700848 -131898935 + GA-rich Low_complexity Low_complexity 2 90 0 3 796 939 99 240 6 chr3 27701281 27701464 -131898319 + URR1A DNA MER1_type 1 226 0 3 796 1206 222 45 59 chr3 27701464 27701815 -131897968 + MTEa LTR MaLR 34 379 0 3 796 974 223 28 5 chr3 27702860 27703072 -131896711 + ID_B1 SINE B4 1 217 -7 3 796 233 192 39 0 chr3 27703266 27703318 -131896465 + GA-rich Low_complexity Low_complexity 2 55 0 3 796 220 336 27 87 chr3 27703680 27703830 -131895953 + MIR3 SINE MIR 2 142 -66 3 796 259 255 0 0 chr3 27703922 27703973 -131895810 - ID SINE ID -168 56 6 3 796 1067 201 5 10 chr3 27704170 27704371 -131895412 - B3 SINE B2 -11 205 6 3 796 243 288 14 0 chr3 27704716 27704789 -131894994 + (TG)n Simple_repeat Simple_repeat 1 74 0 3 796 491 188 8 0 chr3 27704791 27704908 -131894875 + (TA)n Simple_repeat Simple_repeat 1 118 0 3 796 1097 47 0 0 chr3 27705088 27705216 -131894567 + B1_Mm SINE Alu 1 128 -19 3 796 1408 139 89 0 chr3 27706161 27706420 -131893363 - ORR1C1 LTR MaLR 0 378 97 3 796 297 0 0 0 chr3 27706420 27706453 -131893330 + (CA)n Simple_repeat Simple_repeat 1 33 0 3 796 346 241 84 110 chr3 27706530 27706721 -131893062 + B2_Mm2 SINE B2 1 186 -9 3 796 222 300 62 0 chr3 27707112 27707192 -131892591 + RSINE1 SINE B4 19 103 -62 3 796 517 224 93 0 chr3 27707369 27707476 -131892307 - MTEb LTR MaLR -256 123 7 4 796 503 210 40 0 chr3 27707572 27707672 -131892111 + B1F SINE Alu 45 148 -1 4 796 22 35 0 0 chr3 27707921 27707950 -131891833 + AT_rich Low_complexity Low_complexity 1 29 0 4 796 791 195 130 0 chr3 27708200 27708385 -131891398 - B3 SINE B2 -7 209 1 4 796 508 161 0 0 chr3 27709087 27709168 -131890615 - RMER1C Other Other -138 1204 1124 4 796 855 271 80 62 chr3 27709223 27709561 -131890222 - RMER1C Other Other -214 1128 785 4 796 263 290 29 0 chr3 27709600 27709669 -131890114 - RMER1C Other Other -1202 140 70 4 796 204 111 0 0 chr3 27709672 27709708 -131890075 + (TG)n Simple_repeat Simple_repeat 1 36 0 4 796 500 196 27 36 chr3 27709718 27709829 -131889954 - B1_Mur1 SINE Alu -29 120 11 4 796 913 221 54 5 chr3 27710178 27710383 -131889400 - B3 SINE B2 0 216 2 4 796 374 330 5 74 chr3 27710622 27710812 -131888971 + MER5B DNA MER1_type 1 177 -1 4 796 695 281 85 27 chr3 27711058 27711318 -131888465 - MLT1A0 LTR MaLR -47 318 44 4 796 180 0 0 0 chr3 27711327 27711347 -131888436 + (T)n Simple_repeat Simple_repeat 1 20 0 4 796 573 227 31 0 chr3 27711362 27711490 -131888293 - B3A SINE B2 -58 140 9 4 796 281 169 24 24 chr3 27711798 27711883 -131887900 + CT-rich Low_complexity Low_complexity 3 87 0 4 796 232 315 19 99 chr3 27711887 27712049 -131887734 - ID_B1 SINE B4 -29 195 47 4 796 332 236 83 117 chr3 27712871 27712991 -131886792 + B1_Mur1 SINE Alu 6 121 -28 4 796 456 271 75 8 chr3 27713180 27713314 -131886469 - B1F SINE Alu -6 143 1 4 796 207 0 0 0 chr3 27713328 27713351 -131886432 + (TTA)n Simple_repeat Simple_repeat 2 24 0 4 796 2144 90 0 43 chr3 27713354 27713365 -131886418 - Lx3A LINE L1 -6 6975 6967 4 796 222 37 0 0 chr3 27713365 27713392 -131886391 + (TTTA)n Simple_repeat Simple_repeat 4 30 0 4 796 2144 90 0 43 chr3 27713392 27713706 -131886077 - Lx3A LINE L1 -15 6966 6664 4 796 2077 92 28 0 chr3 27713706 27713989 -131885794 - Lx3_Mus LINE L1 -457 6552 6262 4 796 3373 227 99 54 chr3 27714028 27715047 -131884736 - RMER1B Other Other 0 1066 2 4 796 280 274 163 27 chr3 27715473 27715657 -131884126 - Lx8 LINE L1 0 7473 7265 4 796 248 220 0 0 chr3 27715661 27715718 -131884065 - ID_B1 SINE B4 -4 220 164 4 796 512 208 43 2 chr3 27715718 27715854 -131883929 - ORR1D1 LTR MaLR 0 374 223 4 796 304 167 139 0 chr3 27715854 27715926 -131883857 - L1Md_F LINE L1 -945 4935 4854 4 796 7763 53 6 23 chr3 27716260 27717384 -131882399 - L1_Mus2 LINE L1 0 6566 5595 4 796 5267 142 35 41 chr3 27717382 27717555 -131882228 - L1Md_F LINE L1 -2566 3314 3156 4 796 465 34 0 0 chr3 27717555 27717614 -131882169 + (TG)n Simple_repeat Simple_repeat 2 60 0 4 796 5267 142 35 41 chr3 27717614 27718238 -131881545 - L1Md_F LINE L1 -2725 3155 2533 4 796 4419 16 0 24 chr3 27718238 27718743 -131881040 - MT2_Mm LTR ERVL 0 493 1 4 796 5267 104 24 6 chr3 27718743 27719824 -131879959 - L1Md_F LINE L1 -3348 2532 670 4 796 334 120 0 0 chr3 27719816 27719866 -131879917 - L1Md_F LINE L1 -6282 334 285 4 796 4888 156 44 46 chr3 27719868 27720064 -131879719 - L1_Mur3 LINE L1 -3615 2265 2058 4 796 405 0 0 0 chr3 27720064 27720109 -131879674 + (TG)n Simple_repeat Simple_repeat 2 46 0 4 796 4888 160 43 50 chr3 27720109 27721020 -131878763 - L1_Mur3 LINE L1 -3823 2057 1193 4 796 1162 62 0 40 chr3 27721020 27721172 -131878611 - B1_Mm SINE Alu -1 146 1 4 796 1537 234 24 125 chr3 27721172 27721553 -131878230 - L1_Mur3 LINE L1 -6536 1192 826 4 796 674 235 115 54 chr3 27721554 27721833 -131877950 - RMER13A LTR ERVK -470 390 95 4 796 322 207 23 58 chr3 27723130 27723217 -131876566 + B3 SINE B2 133 216 0 4 796 288 261 0 52 chr3 27723553 27723650 -131876133 + MIRb SINE MIR 86 177 -91 4 796 218 296 0 0 chr3 27723921 27723975 -131875808 + G-rich Low_complexity Low_complexity 6 59 0 4 796 330 215 0 0 chr3 27724776 27724841 -131874942 - RMER15 LTR ERVL -105 470 406 4 796 826 274 157 16 chr3 27724924 27725236 -131874547 - Lx8 LINE L1 -237 7236 6881 4 796 450 0 0 0 chr3 27725605 27725655 -131874128 + (TA)n Simple_repeat Simple_repeat 2 51 0 4 796 4261 184 133 24 chr3 27725894 27726845 -131872938 - RMER1B Other Other 0 1066 12 4 796 879 169 0 20 chr3 27726859 27727010 -131872773 - B1_Mur3 SINE Alu 0 149 2 4 796 490 265 101 39 chr3 27727266 27727474 -131872309 + ID_B1 SINE B4 3 223 -1 4 796 616 284 40 57 chr3 27727962 27728190 -131871593 + B4A SINE B4 1 224 -68 4 796 566 93 12 0 chr3 27728228 27728314 -131871469 + (GGAA)n Simple_repeat Simple_repeat 2 88 0 4 796 1021 106 69 48 chr3 27728404 27728592 -131871191 + B2_Mm2 SINE B2 1 192 -3 4 796 234 93 0 104 chr3 27728603 27728651 -131871132 + (TG)n Simple_repeat Simple_repeat 1 43 0 4 796 198 0 0 0 chr3 27728651 27728673 -131871110 + (TA)n Simple_repeat Simple_repeat 1 22 0 4 796 264 30 0 0 chr3 27728708 27728741 -131871042 + (CA)n Simple_repeat Simple_repeat 2 34 0 4 796 420 20 0 0 chr3 27728808 27728857 -131870926 + (TAAAA)n Simple_repeat Simple_repeat 5 53 0 4 796 201 305 12 35 chr3 27728947 27729032 -131870751 + CT-rich Low_complexity Low_complexity 3 85 0 4 796 327 271 47 0 chr3 27729032 27729139 -131870644 - PB1D10 SINE Alu -5 112 1 4 796 360 0 0 0 chr3 27729417 27729457 -131870326 + (TG)n Simple_repeat Simple_repeat 1 40 0 4 796 582 288 101 0 chr3 27729822 27730020 -131869763 + RMER1C Other Other 545 762 -580 4 796 649 123 169 0 chr3 27730030 27730160 -131869623 + ORR1B1 LTR MaLR 1 152 -242 4 796 652 47 0 0 chr3 27730180 27730266 -131869517 - B1_Mm SINE Alu -2 145 60 4 796 1438 111 42 65 chr3 27730266 27730344 -131869439 + ORR1B1 LTR MaLR 140 211 -183 4 796 1419 79 16 0 chr3 27730344 27730534 -131869249 + B2_Mm2 SINE B2 3 195 0 4 796 1438 111 42 65 chr3 27730534 27730716 -131869067 + ORR1B1 LTR MaLR 212 393 -1 4 796 2717 265 24 34 chr3 27730724 27731436 -131868347 + RMER1C Other Other 304 1072 -270 4 796 1288 166 158 29 chr3 27731561 27731872 -131867911 - ORR1B2 LTR MaLR -16 351 1 4 796 672 299 11 5 chr3 27731874 27732062 -131867721 - ID_B1 SINE B4 -13 211 23 4 796 450 357 110 4 chr3 27732198 27732443 -131867340 - B4A SINE B4 -20 272 2 4 796 799 292 30 0 chr3 27732831 27733033 -131866750 + ID_B1 SINE B4 9 216 -8 4 796 291 28 0 0 chr3 27734681 27734717 -131865066 + (TGG)n Simple_repeat Simple_repeat 1 36 0 4 796 665 252 105 10 chr3 27734720 27734920 -131864863 - B4 SINE B4 -3 289 71 4 796 1159 68 0 14 chr3 27735043 27735191 -131864592 + B1_Mus1 SINE Alu 3 148 0 4 796 516 32 0 0 chr3 27735219 27735281 -131864502 + (GAAA)n Simple_repeat Simple_repeat 2 63 0 4 796 182 37 37 0 chr3 27735847 27735874 -131863909 + (TTA)n Simple_repeat Simple_repeat 1 28 0 4 796 626 239 35 93 chr3 27735875 27736101 -131863682 - ID_B1 SINE B4 -10 214 2 4 796 593 0 0 27 chr3 27736476 27736538 -131863245 + (TTC)n Simple_repeat Simple_repeat 3 63 0 4 796 1458 34 0 0 chr3 27736538 27736714 -131863069 + (TTCTCC)n Simple_repeat Simple_repeat 3 178 0 4 796 593 0 0 27 chr3 27736714 27736725 -131863058 + (TTC)n Simple_repeat Simple_repeat 1 11 0 4 796 359 91 18 0 chr3 27737104 27737159 -131862624 + MTD LTR MaLR 364 419 0 4 796 283 322 64 46 chr3 27737412 27737630 -131862153 + MT2A LTR ERVL 10 231 -302 4 796 2268 95 38 0 chr3 27737650 27737965 -131861818 + ORR1A2 LTR MaLR 1 327 0 4 796 312 189 0 0 chr3 27738798 27738851 -131860932 - B1F1 SINE Alu -8 141 89 4 796 468 256 37 31 chr3 27739665 27739826 -131859957 + RSINE1 SINE B4 2 163 -2 4 796 586 152 61 26 chr3 27739856 27739971 -131859812 + PB1D9 SINE Alu 1 119 -1 4 796 212 59 58 19 chr3 27739972 27740024 -131859759 + (CAAAA)n Simple_repeat Simple_repeat 1 54 0 4 796 387 298 12 62 chr3 27740062 27740223 -131859560 + RSINE1 SINE B4 13 165 0 4 796 235 296 14 0 chr3 27741547 27741618 -131858165 + ID_B1 SINE B4 151 222 -2 4 796 196 93 0 65 chr3 27741618 27741664 -131858119 + (CAAA)n Simple_repeat Simple_repeat 1 43 0 4 796 250 219 27 0 chr3 27741896 27741969 -131857814 + PB1D9 SINE Alu 1 75 -45 4 796 492 243 66 0 chr3 27742033 27742169 -131857614 + ID_B1 SINE B4 78 222 -2 4 796 339 65 0 0 chr3 27742488 27742534 -131857249 + (CA)n Simple_repeat Simple_repeat 2 47 0 4 796 438 287 31 63 chr3 27742596 27742689 -131857094 + ID SINE ID 2 87 -137 4 796 470 206 106 8 chr3 27742689 27742821 -131856962 + B1F2 SINE Alu 2 146 -3 4 796 326 42 21 0 chr3 27743397 27743445 -131856338 + (CA)n Simple_repeat Simple_repeat 2 50 0 4 796 530 304 69 24 chr3 27743451 27743741 -131856042 + L1M5 LINE L1 5004 5306 -840 4 796 556 229 72 98 chr3 27743742 27743936 -131855847 - B4 SINE B4 -102 190 2 4 796 357 275 22 0 chr3 27744308 27744399 -131855384 + RSINE1 SINE B4 1 93 -72 4 796 221 0 0 33 chr3 27744479 27744509 -131855274 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 4 796 1087 196 64 13 chr3 27744510 27744743 -131855040 + MTD LTR MaLR 20 264 -155 4 796 394 236 34 94 chr3 27745034 27745151 -131854632 - PB1D10 SINE Alu -5 112 3 4 796 542 256 34 0 chr3 27745151 27745186 -131854597 - ID SINE ID -138 86 48 4 796 697 253 52 81 chr3 27745271 27745542 -131854241 + RLTR41 LTR ERV1 184 446 0 4 796 1771 187 6 29 chr3 27745542 27745878 -131853905 + ORR1B2 LTR MaLR 32 359 -8 4 796 29529 120 20 16 chr3 27746301 27748635 -131851148 - Lx4A LINE L1 -1 7057 4724 4 796 3205 74 14 2 chr3 27748635 27749053 -131850730 - L1_Mus1 LINE L1 -4 6563 6141 4 796 29529 106 24 17 chr3 27749053 27749138 -131850645 - Lx4A LINE L1 -1154 4723 4638 4 796 261 0 0 0 chr3 27749138 27749167 -131850616 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 4 796 29529 107 28 18 chr3 27749167 27752738 -131847045 - Lx4A LINE L1 -1240 4637 1024 4 796 1927 134 14 67 chr3 27752738 27753171 -131846612 - RMER17C LTR ERVK 0 410 1 4 796 3150 127 103 31 chr3 27753171 27753481 -131846302 - Lx4A LINE L1 -6063 1023 699 4 796 409 223 15 0 chr3 27754181 27754311 -131845472 + CT-rich Low_complexity Low_complexity 2 133 0 4 796 1946 142 48 6 chr3 27754333 27754667 -131845116 - ORR1B1 LTR MaLR -5 389 42 5 796 362 278 10 20 chr3 27754683 27754782 -131845001 - PB1D10 SINE Alu -15 102 5 5 796 521 327 19 9 chr3 27754947 27755157 -131844626 - MLT1H1 LTR MaLR -3 552 341 5 796 800 293 14 0 chr3 27755392 27755600 -131844183 + ID_B1 SINE B4 5 215 -9 5 796 692 253 73 35 chr3 27755627 27755942 -131843841 + L1MD1 LINE L1 5863 6189 -53 5 796 189 0 0 0 chr3 27755942 27755963 -131843820 + (T)n Simple_repeat Simple_repeat 1 21 0 5 796 1150 82 0 0 chr3 27755963 27756110 -131843673 - B1_Mus2 SINE Alu 0 147 1 5 796 1037 252 68 81 chr3 27756219 27756603 -131843180 - MTE2a LTR MaLR 0 379 1 5 796 1185 62 0 0 chr3 27756630 27756776 -131843007 - B1_Mus2 SINE Alu 0 147 2 5 796 186 382 42 0 chr3 27757688 27757832 -131841951 - L4 LINE RTE -119 1910 1761 5 796 22 0 0 0 chr3 27758825 27758847 -131840936 + AT_rich Low_complexity Low_complexity 1 22 0 5 796 207 139 0 0 chr3 27761109 27761145 -131838638 + (GGA)n Simple_repeat Simple_repeat 3 38 0 5 796 207 342 0 0 chr3 27761594 27761667 -131838116 + CT-rich Low_complexity Low_complexity 1 73 0 5 796 202 351 90 0 chr3 27763248 27763382 -131836401 + MIRc SINE MIR 6 151 -117 5 796 345 259 75 33 chr3 27763537 27763657 -131836126 - RSINE1 SINE B4 0 165 41 5 796 523 272 25 31 chr3 27764253 27764416 -131835367 - RSINE1 SINE B4 0 165 4 5 796 709 271 28 19 chr3 27764427 27764641 -131835142 - ID_B1 SINE B4 -7 217 2 5 796 728 287 15 5 chr3 27765832 27766035 -131833748 + B4A SINE B4 2 206 -86 5 796 368 226 0 8 chr3 27766106 27766231 -131833552 + (CA)n Simple_repeat Simple_repeat 1 124 0 5 796 749 82 0 1 chr3 27766586 27766707 -131833076 - L1Md_F2 LINE L1 -299 6283 6183 5 796 424 295 134 28 chr3 27766813 27767029 -131832754 - MER58B DNA MER1_type -15 326 88 5 796 556 283 40 0 chr3 27767255 27767407 -131832376 - RSINE1 SINE B4 -4 161 4 5 796 243 0 0 0 chr3 27767446 27767473 -131832310 + (CAA)n Simple_repeat Simple_repeat 1 27 0 5 796 381 22 0 0 chr3 27767475 27767521 -131832262 + (CTA)n Simple_repeat Simple_repeat 1 46 0 5 796 180 278 0 53 chr3 27767565 27767622 -131832161 - L3 LINE CR1 -442 4047 3994 5 796 887 288 38 28 chr3 27768113 27768402 -131831381 + B4 SINE B4 1 292 0 5 796 430 319 87 31 chr3 27768593 27768916 -131830867 + Charlie21a DNA MER1_type 366 706 -507 5 796 305 296 9 61 chr3 27768920 27769035 -131830748 + PB1D10 SINE Alu 1 109 -8 5 796 267 290 104 90 chr3 27769280 27769320 -131830463 - B1F SINE Alu -3 146 118 5 796 682 67 29 0 chr3 27769320 27769424 -131830359 + (TTCC)n Simple_repeat Simple_repeat 3 109 0 5 796 267 372 19 10 chr3 27769424 27769527 -131830256 - PB1D10 SINE Alu -13 104 1 5 796 821 241 45 0 chr3 27769543 27769742 -131830041 - B3 SINE B2 -8 208 1 5 796 300 301 43 0 chr3 27769771 27769864 -131829919 - MER2 DNA MER2_type -4 341 245 5 796 1684 256 67 31 chr3 27770250 27770808 -131828975 + Lx8 LINE L1 6871 7471 -2 5 796 1868 181 30 16 chr3 27770953 27771323 -131828460 - ORR1C1 LTR MaLR 0 378 4 5 796 1226 249 74 0 chr3 27771928 27772281 -131827502 + MTEa LTR MaLR 1 379 0 5 796 355 331 8 8 chr3 27772622 27772747 -131827036 + MLT2B3 LTR ERVL 1 125 -429 5 796 296 353 0 75 chr3 27772747 27772809 -131826974 + MTEb LTR MaLR 1 173 -206 5 796 674 97 0 137 chr3 27772900 27773031 -131826752 - RMER21B LTR ERV1 -729 113 1 5 796 297 75 0 0 chr3 27773423 27773463 -131826320 + (CA)n Simple_repeat Simple_repeat 1 40 0 5 796 564 170 0 0 chr3 27773496 27773602 -131826181 + (TATATG)n Simple_repeat Simple_repeat 2 107 0 5 796 432 173 0 0 chr3 27773614 27773689 -131826094 - B3A SINE B2 -81 117 43 5 796 273 346 19 0 chr3 27773734 27773838 -131825945 - PB1D10 SINE Alu 0 117 12 5 796 1217 294 80 28 chr3 27773889 27774602 -131825181 - L1MA4 LINE L1 -365 5935 5146 5 796 216 0 0 0 chr3 27774626 27774650 -131825133 + (TCC)n Simple_repeat Simple_repeat 2 25 0 5 796 454 261 120 36 chr3 27775708 27775875 -131823908 - B4A SINE B4 -103 189 9 5 796 198 164 0 69 chr3 27775931 27776003 -131823780 + CT-rich Low_complexity Low_complexity 2 68 0 5 796 243 263 9 57 chr3 27776094 27776199 -131823584 - B1F SINE Alu -10 139 40 5 796 401 142 35 0 chr3 27777142 27777255 -131822528 + CT-rich Low_complexity Low_complexity 2 118 0 5 796 1062 124 0 0 chr3 27777274 27777555 -131822228 + (TG)n Simple_repeat Simple_repeat 1 281 0 5 796 596 245 25 13 chr3 27777579 27777736 -131822047 - B4A SINE B4 -3 289 131 5 796 245 273 118 47 chr3 27777989 27778158 -131821625 + Lx8 LINE L1 7275 7455 -18 5 796 247 237 147 49 chr3 27778255 27778357 -131821426 + PB1D9 SINE Alu 1 112 -8 5 796 200 35 35 0 chr3 27779045 27779074 -131820709 + (TGGGGG)n Simple_repeat Simple_repeat 1 30 0 5 796 381 286 62 0 chr3 27779583 27779695 -131820088 + RSINE1 SINE B4 4 122 -43 5 796 856 277 14 0 chr3 27779943 27780156 -131819627 + ID_B1 SINE B4 1 216 -8 5 796 229 345 43 34 chr3 27780224 27780341 -131819442 - MER5A DNA MER1_type -24 165 48 5 796 565 267 38 0 chr3 27780375 27780506 -131819277 + ID_B1 SINE B4 88 223 -1 5 796 1197 179 0 45 chr3 27780636 27780858 -131818925 - URR1B DNA MER1_type 0 225 14 5 796 209 256 136 23 chr3 27781585 27781673 -131818110 + MIRm SINE MIR 23 120 -156 5 796 758 284 48 9 chr3 27781694 27781904 -131817879 - ID_B1 SINE B4 -5 219 2 5 796 805 211 65 0 chr3 27782312 27782511 -131817272 + B3 SINE B2 5 216 0 5 796 582 205 93 16 chr3 27782520 27782649 -131817134 + B1F SINE Alu 10 148 -1 5 796 520 286 8 0 chr3 27782813 27782939 -131816844 + Lx8 LINE L1 7168 7294 -179 5 796 408 186 25 0 chr3 27783003 27783121 -131816662 + (CA)n Simple_repeat Simple_repeat 2 122 0 5 796 23 0 0 0 chr3 27783316 27783339 -131816444 + AT_rich Low_complexity Low_complexity 1 23 0 5 796 421 209 67 76 chr3 27784136 27784255 -131815528 - ID_B1 SINE B4 0 224 107 5 796 270 160 0 0 chr3 27784889 27784939 -131814844 + (CA)n Simple_repeat Simple_repeat 1 50 0 5 796 568 324 0 0 chr3 27785123 27785262 -131814521 + ID_B1 SINE B4 78 216 -8 5 796 513 0 0 0 chr3 27785268 27785325 -131814458 + (CA)n Simple_repeat Simple_repeat 2 58 0 5 796 990 251 75 89 chr3 27785764 27786048 -131813735 + ORR1E LTR MaLR 6 300 -59 5 796 188 35 35 0 chr3 27786048 27786077 -131813706 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 5 796 1252 34 0 0 chr3 27786077 27786223 -131813560 - B1_Mus1 SINE Alu -1 147 2 5 796 990 251 75 89 chr3 27786223 27786286 -131813497 + ORR1E LTR MaLR 301 348 -11 5 796 455 60 15 0 chr3 27786286 27786353 -131813430 + (TG)n Simple_repeat Simple_repeat 2 69 0 5 796 423 0 0 0 chr3 27786464 27786511 -131813272 + (TC)n Simple_repeat Simple_repeat 2 48 0 5 796 468 0 0 0 chr3 27786511 27786562 -131813221 + (TG)n Simple_repeat Simple_repeat 1 52 0 5 796 379 280 74 9 chr3 27786562 27786670 -131813113 - RSINE1 SINE B4 -37 128 14 5 797 527 181 0 0 chr3 27788446 27788529 -131811254 + ID_B1 SINE B4 126 208 -16 5 797 1158 306 25 68 chr3 27788531 27788899 -131810884 - ORR1E LTR MaLR -2 357 6 5 797 374 208 0 49 chr3 27789072 27789153 -131810630 + B3A SINE B2 1 77 -121 5 797 234 235 0 0 chr3 27789221 27789272 -131810511 + CT-rich Low_complexity Low_complexity 4 54 0 5 797 291 285 145 8 chr3 27790299 27790423 -131809360 - B1F2 SINE Alu -8 141 1 5 797 711 240 103 11 chr3 27790423 27790501 -131809282 - ID_B1 SINE B4 -129 95 1 5 797 229 312 38 156 chr3 27791770 27791799 -131807984 + MER31A LTR ERV1 63 88 -397 5 797 532 248 72 0 chr3 27791799 27791952 -131807831 + RSINE1 SINE B4 2 165 0 5 797 229 312 38 156 chr3 27791952 27792108 -131807675 + MER31A LTR ERV1 89 226 -259 5 797 188 316 22 133 chr3 27793109 27793244 -131806539 - L2a LINE L2 0 3426 3307 5 797 534 231 40 33 chr3 27793381 27793533 -131806250 - RSINE1 SINE B4 -11 154 2 5 797 285 280 105 72 chr3 27793535 27793611 -131806172 - L2a LINE L2 -240 3186 3116 5 797 477 253 201 16 chr3 27793611 27793800 -131805983 + ID_B1 SINE B4 1 224 0 5 797 285 298 104 65 chr3 27793800 27793965 -131805818 - L2a LINE L2 -311 3115 2927 5 797 324 158 0 0 chr3 27794369 27794426 -131805357 + (TA)n Simple_repeat Simple_repeat 1 57 0 5 797 351 261 68 0 chr3 27794771 27794859 -131804924 - B1F1 SINE Alu -51 98 5 5 797 345 245 76 109 chr3 27795815 27795934 -131803849 - B1F2 SINE Alu -2 115 1 5 797 917 205 14 24 chr3 27795975 27796185 -131803598 + B3 SINE B2 1 208 -8 5 797 315 0 0 0 chr3 27796206 27796241 -131803542 + (GA)n Simple_repeat Simple_repeat 1 35 0 5 797 237 108 0 0 chr3 27796241 27796277 -131803506 + (TG)n Simple_repeat Simple_repeat 1 37 0 5 797 355 241 0 54 chr3 27796308 27796400 -131803383 - RSINE1 SINE B4 -50 115 29 5 797 323 353 25 56 chr3 27796412 27796610 -131803173 + MIRb SINE MIR 28 219 -49 5 797 413 270 122 0 chr3 27799019 27799134 -131800649 - B1F2 SINE Alu -20 129 1 5 797 3690 105 68 20 chr3 27799171 27799755 -131800028 - Lx3C LINE L1 -1 6975 6364 5 797 1193 101 0 6 chr3 27799809 27799989 -131799794 + (GAA)n Simple_repeat Simple_repeat 1 179 0 5 797 414 159 28 0 chr3 27800186 27800293 -131799490 + CT-rich Low_complexity Low_complexity 3 112 0 5 797 297 314 72 32 chr3 27800572 27800697 -131799086 + RSINE1 SINE B4 2 131 -34 6 797 879 146 21 7 chr3 27800877 27801022 -131798761 - B3 SINE B2 0 216 70 6 797 378 341 85 69 chr3 27801110 27801604 -131798179 - Lx8 LINE L1 -2 7471 6970 6 797 866 284 135 41 chr3 27801946 27802265 -131797518 - ORR1E LTR MaLR -2 357 9 6 797 267 272 48 71 chr3 27802278 27802418 -131797365 + L2a LINE L2 3231 3393 -33 6 797 574 261 181 0 chr3 27802919 27803107 -131796676 + ID_B1 SINE B4 2 223 -1 6 797 883 152 12 12 chr3 27803109 27803282 -131796501 + GA-rich Low_complexity Low_complexity 3 175 0 6 797 412 244 0 0 chr3 27803282 27803360 -131796423 + polypurine Low_complexity Low_complexity 1 78 0 6 797 841 337 51 25 chr3 27804489 27804842 -131794941 - MTEa LTR MaLR 0 379 18 6 797 249 329 0 68 chr3 27805286 27805374 -131794409 - ID4_ SINE ID 0 83 2 6 797 930 217 133 52 chr3 27805431 27805679 -131794104 + B4A SINE B4 3 270 -22 6 797 411 73 0 0 chr3 27805679 27805734 -131794049 + (CA)n Simple_repeat Simple_repeat 1 55 0 6 797 556 301 36 54 chr3 27805749 27805970 -131793813 + ID_B1 SINE B4 1 217 -7 6 797 231 88 0 0 chr3 27805985 27806019 -131793764 + (GGGA)n Simple_repeat Simple_repeat 4 37 0 6 797 309 316 10 31 chr3 27806810 27806891 -131792892 + B4 SINE B4 88 166 -126 6 797 4032 148 62 25 chr3 27806891 27807627 -131792156 + RLTR25B LTR ERVK 1 764 -264 6 797 226 196 19 19 chr3 27807715 27807767 -131792016 + U7 snRNA snRNA 10 61 -2 6 797 234 0 0 0 chr3 27807825 27807851 -131791932 + (T)n Simple_repeat Simple_repeat 1 26 0 6 797 910 211 167 33 chr3 27807882 27808122 -131791661 + RLTR25B LTR ERVK 757 1028 0 6 797 347 243 14 0 chr3 27808133 27808207 -131791576 + B4A SINE B4 191 265 -27 6 797 396 0 0 0 chr3 27808211 27808255 -131791528 + (CA)n Simple_repeat Simple_repeat 2 45 0 6 797 27 0 0 0 chr3 27808668 27808695 -131791088 + AT_rich Low_complexity Low_complexity 1 27 0 6 797 321 259 13 26 chr3 27808863 27808948 -131790835 - ID4_ SINE ID -63 89 6 6 797 640 227 0 0 chr3 27809126 27809245 -131790538 + RSINE1 SINE B4 28 146 -19 6 797 472 312 89 66 chr3 27809338 27809359 -131790424 - ID_B1 SINE B4 -4 220 200 6 797 376 190 235 25 chr3 27809359 27809478 -131790305 + B1_Mus1 SINE Alu 5 148 0 6 797 472 312 89 66 chr3 27809478 27809624 -131790159 - ID_B1 SINE B4 -25 199 41 6 797 2209 84 17 67 chr3 27809624 27809969 -131789814 - ORR1A4 LTR MaLR 0 329 2 6 797 10469 146 24 95 chr3 27809970 27812081 -131787702 - ORR1A4-int LTR MaLR 0 1963 2 6 797 2269 93 22 9 chr3 27812083 27812407 -131787376 - ORR1A4 LTR MaLR -1 328 1 6 797 472 312 89 66 chr3 27812407 27812446 -131787337 - ID SINE ID -184 40 3 6 797 232 265 94 24 chr3 27812643 27812728 -131787055 - PB1D7 SINE Alu -3 117 27 6 797 527 117 13 0 chr3 27812792 27812869 -131786914 - BC1_Mm scRNA scRNA -74 78 1 6 797 746 270 5 5 chr3 27812894 27813091 -131786692 - B3A SINE B2 0 198 2 6 797 306 229 9 119 chr3 27813228 27813337 -131786446 + ID_B1 SINE B4 105 201 -23 6 797 589 287 71 34 chr3 27813350 27813588 -131786195 + B4A SINE B4 1 247 -45 6 797 1764 173 50 3 chr3 27813621 27813958 -131785825 - Lx5 LINE L1 -3 7047 6695 6 797 2863 55 9 0 chr3 27814008 27814351 -131785432 - ORR1A1 LTR MaLR 0 346 1 6 797 240 256 127 92 chr3 27814757 27814793 -131784990 - B1F1 SINE Alu 0 149 3 6 797 380 217 236 0 chr3 27814793 27814899 -131784884 - ID_B1 SINE B4 -10 214 84 6 797 389 141 14 0 chr3 27815102 27815173 -131784610 + CT-rich Low_complexity Low_complexity 1 72 0 6 797 819 153 0 0 chr3 27815200 27815350 -131784433 + CT-rich Low_complexity Low_complexity 3 152 0 6 797 621 240 8 0 chr3 27815461 27815590 -131784193 + B3A SINE B2 8 137 -61 6 797 2093 129 79 6 chr3 27816135 27816477 -131783306 + ORR1B2 LTR MaLR 1 367 0 6 797 492 303 14 0 chr3 27816690 27816835 -131782948 - B1F2 SINE Alu -1 148 2 6 797 482 327 50 0 chr3 27816894 27817093 -131782690 - L1MA4 LINE L1 -413 5887 5679 6 797 294 298 0 0 chr3 27817167 27817271 -131782512 + (CA)n Simple_repeat Simple_repeat 2 105 0 6 797 526 256 17 0 chr3 27817403 27817520 -131782263 - B1F SINE Alu -1 148 30 6 797 748 103 331 0 chr3 27818529 27818665 -131781118 - B2_Mm2 SINE B2 -14 181 1 6 797 198 307 193 33 chr3 27818706 27818918 -131780865 - L3 LINE CR1 -2297 2192 1947 6 797 343 269 124 45 chr3 27818927 27819129 -131780654 - ID_B1 SINE B4 -4 220 3 6 797 386 234 152 9 chr3 27819566 27819678 -131780105 - RSINE1 SINE B4 -35 130 3 6 797 211 278 79 53 chr3 27819785 27819899 -131779884 + B4 SINE B4 24 140 -152 6 797 278 295 65 40 chr3 27820261 27820377 -131779406 - PB1D7 SINE Alu 0 120 2 6 797 357 24 0 0 chr3 27820452 27820494 -131779289 + (TG)n Simple_repeat Simple_repeat 2 43 0 6 797 740 229 98 10 chr3 27820494 27820688 -131779095 - MTD LTR MaLR 0 419 209 6 797 1734 144 35 110 chr3 27820697 27821071 -131778712 + ORR1B1 LTR MaLR 41 386 -8 6 797 635 250 34 94 chr3 27821065 27821238 -131778545 - MTD LTR MaLR -196 223 48 6 797 745 168 73 0 chr3 27821238 27821375 -131778408 + B1_Mus2 SINE Alu 1 147 0 6 797 635 250 34 94 chr3 27821375 27821435 -131778348 - MTD LTR MaLR -372 47 4 6 797 373 279 61 48 chr3 27821450 27821597 -131778186 - RSINE1 SINE B4 -13 152 4 6 797 572 165 190 0 chr3 27821870 27821991 -131777792 - B1_Mur4 SINE Alu -3 147 4 6 797 1964 43 0 0 chr3 27822362 27822596 -131777187 + L1Md_T LINE L1 6349 6582 0 6 797 222 214 18 18 chr3 27822709 27822725 -131777058 + (CAAA)n Simple_repeat Simple_repeat 4 19 0 6 797 537 209 33 42 chr3 27822725 27822845 -131776938 + PB1D7 SINE Alu 1 119 -1 6 797 222 214 18 18 chr3 27822845 27822885 -131776898 + (CAAA)n Simple_repeat Simple_repeat 4 43 0 6 797 846 255 28 0 chr3 27823038 27823250 -131776533 - ID_B1 SINE B4 -6 218 1 6 797 276 270 68 17 chr3 27823371 27823488 -131776295 + MER20B DNA MER1_type 518 640 -143 6 797 287 309 79 109 chr3 27823582 27823847 -131775936 + Charlie7 DNA MER1_type 1186 1442 -1170 6 797 490 314 81 33 chr3 27823875 27824230 -131775553 + MLT2B2 LTR ERVL 35 505 -62 6 797 353 176 0 13 chr3 27824234 27824309 -131775474 + (TGG)n Simple_repeat Simple_repeat 1 74 0 6 797 356 195 381 0 chr3 27824309 27824427 -131775356 - RSINE1 SINE B4 -1 164 2 6 797 2004 130 55 99 chr3 27825125 27825509 -131774274 - ORR1B2 LTR MaLR 0 367 1 6 797 279 0 0 0 chr3 27825647 27825678 -131774105 + (CA)n Simple_repeat Simple_repeat 1 31 0 6 797 571 276 100 33 chr3 27825846 27826056 -131773727 + ID_B1 SINE B4 1 224 0 6 797 1107 12 53 0 chr3 27826361 27826530 -131773253 + (TCTA)n Simple_repeat Simple_repeat 3 180 0 6 797 382 358 17 0 chr3 27826531 27826651 -131773132 - B1F SINE Alu -10 139 18 6 797 227 336 88 26 chr3 27826896 27826932 -131772851 - RSINE1 SINE B4 -44 121 2 6 797 387 273 0 0 chr3 27826932 27827009 -131772774 - B3A SINE B2 -121 77 1 6 797 374 282 21 28 chr3 27827014 27827140 -131772643 - B1F SINE Alu -2 147 15 6 797 348 285 26 42 chr3 27827151 27827370 -131772413 + RLTR15 LTR ERVK 48 228 -131 6 797 39 60 0 0 chr3 27827379 27827446 -131772337 + AT_rich Low_complexity Low_complexity 1 67 0 6 797 204 45 43 43 chr3 27827583 27827630 -131772153 + (TTTG)n Simple_repeat Simple_repeat 1 47 0 6 797 298 276 36 54 chr3 27827958 27828069 -131771714 - PB1D9 SINE Alu -11 109 1 6 797 359 203 12 48 chr3 27827987 27828070 -131771713 - ID_B1 SINE B4 -64 160 81 6 797 747 284 78 0 chr3 27828529 27828733 -131771050 - ID_B1 SINE B4 -3 221 2 6 797 1488 201 83 83 chr3 27828786 27829117 -131770666 + ORR1D1 LTR MaLR 1 337 -37 6 797 2692 58 3 0 chr3 27829117 27829443 -131770340 + ORR1A2 LTR MaLR 1 327 0 6 797 1488 201 83 83 chr3 27829443 27829485 -131770298 + ORR1D1 LTR MaLR 338 374 0 6 797 630 126 0 0 chr3 27829492 27829595 -131770188 + (GGAA)n Simple_repeat Simple_repeat 4 106 0 6 797 248 301 0 117 chr3 27829735 27829794 -131769989 + ID_B1 SINE B4 108 220 -4 6 797 314 232 14 0 chr3 27829794 27829863 -131769920 + B1F1 SINE Alu 79 148 -1 6 797 306 345 69 14 chr3 27829914 27830058 -131769725 - L1M5 LINE L1 -683 5441 5290 6 797 355 340 7 39 chr3 27830060 27830213 -131769570 - B1_Mur1 SINE Alu -1 148 1 6 797 366 23 0 0 chr3 27830253 27830296 -131769487 + (TA)n Simple_repeat Simple_repeat 1 43 0 6 797 345 109 0 0 chr3 27830296 27830360 -131769423 + (GA)n Simple_repeat Simple_repeat 1 64 0 6 797 216 313 24 24 chr3 27830385 27830470 -131769313 - RSINE1 SINE B4 -76 89 5 6 797 825 182 19 6 chr3 27830461 27830617 -131769166 - ID_B1 SINE B4 -51 241 82 6 797 346 270 204 23 chr3 27830795 27831015 -131768768 + L1ME4a LINE L1 5798 6057 -67 6 797 360 133 0 0 chr3 27831131 27831191 -131768592 + (TTTTC)n Simple_repeat Simple_repeat 1 60 0 6 797 1323 99 16 16 chr3 27831191 27831385 -131768398 - B2_Mm2 SINE B2 0 195 2 6 797 450 138 0 24 chr3 27831868 27831994 -131767789 + T-rich Low_complexity Low_complexity 3 125 0 6 797 31 0 0 0 chr3 27832077 27832108 -131767675 + AT_rich Low_complexity Low_complexity 1 31 0 6 797 9664 61 1 0 chr3 27832160 27833355 -131766428 + L1Md_F2 LINE L1 4390 5585 -298 6 797 8061 55 2 4 chr3 27833356 27834354 -131765429 + L1Md_F2 LINE L1 5587 6582 0 6 797 549 30 0 0 chr3 27834399 27834466 -131765317 + (TCC)n Simple_repeat Simple_repeat 3 69 0 6 797 654 231 14 0 chr3 27834469 27834616 -131765167 - B1_Mur3 SINE Alu 0 149 1 6 797 401 298 22 55 chr3 27834616 27834650 -131765133 - ID_B1 SINE B4 0 224 50 6 797 1441 200 129 6 chr3 27834761 27835093 -131764690 + ORR1C1 LTR MaLR 5 377 -1 6 797 533 224 62 7 chr3 27835447 27835591 -131764192 - MTEa LTR MaLR 0 379 228 6 797 333 0 0 0 chr3 27836995 27837032 -131762751 + (CA)n Simple_repeat Simple_repeat 2 38 0 6 797 459 0 0 0 chr3 27837032 27837082 -131762701 + (GA)n Simple_repeat Simple_repeat 2 52 0 7 797 422 212 91 0 chr3 27838343 27838442 -131761341 - ID_B1 SINE B4 -5 219 112 7 797 191 103 26 0 chr3 27839476 27839515 -131760268 + (TTTTTA)n Simple_repeat Simple_repeat 3 42 0 7 797 212 288 71 63 chr3 27839742 27839868 -131759915 - B1_Mus2 SINE Alu -20 127 1 7 797 394 302 153 40 chr3 27839890 27840066 -131759717 - ID_B1 SINE B4 -25 199 4 7 797 224 0 65 0 chr3 27840275 27840306 -131759477 + (CAAA)n Simple_repeat Simple_repeat 3 35 0 7 797 204 158 0 0 chr3 27841376 27841414 -131758369 + (TCTG)n Simple_repeat Simple_repeat 3 40 0 7 797 931 150 12 0 chr3 27841449 27841622 -131758161 + CT-rich Low_complexity Low_complexity 2 176 0 7 797 805 238 31 76 chr3 27841643 27841866 -131757917 - ID_B1 SINE B4 -3 221 9 7 797 1012 191 178 0 chr3 27842552 27842777 -131757006 - MTD LTR MaLR -59 360 96 7 797 1113 83 0 0 chr3 27842825 27842981 -131756802 + ORR1A3 LTR MaLR 171 326 0 7 797 2604 129 14 0 chr3 27842981 27843398 -131756385 + ORR1A3-int LTR MaLR 1 423 -1540 7 797 1052 127 16 44 chr3 27843382 27843564 -131756219 - ORR1A2 LTR MaLR -150 177 1 7 797 712 31 0 21 chr3 27843631 27843728 -131756055 + (GAAA)n Simple_repeat Simple_repeat 1 95 0 7 797 1152 119 0 0 chr3 27843730 27843907 -131755876 + (GGAGA)n Simple_repeat Simple_repeat 4 180 0 7 797 515 207 18 0 chr3 27844271 27844382 -131755401 - ID_B1 SINE B4 -2 222 110 7 797 2077 90 23 0 chr3 27844476 27844786 -131754997 + ORR1A2 LTR MaLR 11 327 0 7 797 35 24 0 0 chr3 27844856 27844898 -131754885 + AT_rich Low_complexity Low_complexity 1 42 0 7 797 186 333 79 0 chr3 27845390 27845504 -131754279 + MIR SINE MIR 114 236 -26 7 797 296 292 0 42 chr3 27845828 27845946 -131753837 - PB1D10 SINE Alu 0 117 5 7 797 617 282 49 22 chr3 27846232 27846417 -131753366 - B4A SINE B4 0 292 103 7 797 299 317 88 88 chr3 27846514 27846787 -131752996 - B4A SINE B4 -19 273 1 7 797 257 196 0 35 chr3 27846787 27846844 -131752939 - B4A SINE B4 -196 96 42 7 797 267 229 28 14 chr3 27846840 27846911 -131752872 - ID_B1 SINE B4 -42 182 111 7 797 2805 189 95 8 chr3 27847425 27848034 -131751749 + Lx9 LINE L1 6761 7422 -222 7 797 201 74 0 0 chr3 27848285 27848312 -131751471 + (GTTTG)n Simple_repeat Simple_repeat 5 31 0 7 797 1788 137 151 37 chr3 27848727 27849105 -131750678 + MTC LTR MaLR 1 421 0 7 797 378 316 97 0 chr3 27849655 27849769 -131750014 - ID_B1 SINE B4 -19 205 81 7 797 699 194 126 40 chr3 27849891 27850090 -131749693 + B3 SINE B2 1 216 0 7 797 231 36 0 0 chr3 27851679 27851707 -131748076 + (TTG)n Simple_repeat Simple_repeat 1 28 0 7 797 388 290 83 41 chr3 27852013 27852182 -131747601 - RMER30 DNA MER1_type -25 177 2 7 797 330 266 82 101 chr3 27852278 27852437 -131747346 + MLT1A0 LTR MaLR 1 156 -209 7 797 25 51 0 0 chr3 27852456 27852495 -131747288 + AT_rich Low_complexity Low_complexity 1 39 0 7 797 248 121 69 0 chr3 27852559 27852617 -131747166 - Charlie12 DNA MER1_type -4 2869 2808 7 797 3919 159 21 36 chr3 27852663 27852694 -131747089 - RLTR17 LTR ERVK 0 692 667 7 797 1171 48 7 14 chr3 27852694 27852841 -131746942 + B1_Mm SINE Alu 1 146 -1 7 797 3919 159 21 36 chr3 27852841 27853511 -131746272 - RLTR17 LTR ERVK -26 666 1 7 797 1115 287 99 19 chr3 27853516 27854162 -131745621 - L1MC3 LINE L1 -155 7630 6933 7 797 219 69 0 0 chr3 27854183 27854212 -131745571 + (TG)n Simple_repeat Simple_repeat 2 30 0 7 797 612 101 0 0 chr3 27854276 27854365 -131745418 + (TTTC)n Simple_repeat Simple_repeat 4 92 0 7 797 186 227 0 0 chr3 27854355 27854399 -131745384 + CT-rich Low_complexity Low_complexity 4 47 0 7 797 1194 104 63 37 chr3 27854407 27854597 -131745186 - B2_Mm2 SINE B2 0 195 1 7 797 650 317 15 10 chr3 27854749 27854950 -131744833 - ID_B1 SINE B4 -15 209 8 7 797 812 282 81 76 chr3 27855734 27856103 -131743680 - MTE2b LTR MaLR -7 372 2 7 797 470 328 0 0 chr3 27856157 27856288 -131743495 + RSINE1 SINE B4 11 141 -24 7 797 932 223 0 47 chr3 27856377 27856589 -131743194 - B3 SINE B2 -12 204 3 7 797 263 259 4 71 chr3 27856616 27856729 -131743054 + PB1D10 SINE Alu 11 115 -2 7 797 243 254 15 45 chr3 27856734 27856800 -131742983 + RSINE1 SINE B4 3 66 -99 7 797 188 143 24 0 chr3 27856911 27856953 -131742830 + (CAA)n Simple_repeat Simple_repeat 3 45 0 7 797 610 265 0 0 chr3 27857274 27857421 -131742362 + B1_Mur2 SINE Alu 1 147 -2 7 797 342 0 0 0 chr3 27857983 27858021 -131741762 + (TG)n Simple_repeat Simple_repeat 2 39 0 7 797 627 247 96 19 chr3 27858024 27858181 -131741602 - B3A SINE B2 -28 170 2 7 797 1197 62 0 0 chr3 27858839 27858984 -131740799 - B1_Mm SINE Alu 0 147 3 7 797 1070 224 9 9 chr3 27859161 27859382 -131740401 + ID_B1 SINE B4 3 223 -1 7 797 306 285 147 8 chr3 27859562 27859759 -131740024 + LTR16E2 LTR ERVL 239 460 -78 7 797 736 220 124 10 chr3 27859972 27860165 -131739618 - B3 SINE B2 0 216 2 7 797 220 276 62 31 chr3 27860217 27860314 -131739469 - MIR3 SINE MIR -46 162 63 7 797 595 199 54 41 chr3 27860568 27860715 -131739068 - B1_Mur2 SINE Alu 0 149 1 7 797 603 177 18 0 chr3 27860722 27860835 -131738948 - B1_Mus2 SINE Alu 0 147 33 7 797 252 288 49 12 chr3 27861932 27862013 -131737770 - PB1D7 SINE Alu -10 110 27 7 797 576 272 0 31 chr3 27863529 27863658 -131736125 + RSINE1 SINE B4 6 130 -35 7 797 555 43 0 0 chr3 27863667 27863737 -131736046 + (CA)n Simple_repeat Simple_repeat 1 70 0 7 797 375 78 0 0 chr3 27864971 27865022 -131734761 + (TG)n Simple_repeat Simple_repeat 1 51 0 7 797 253 364 23 8 chr3 27865064 27865197 -131734586 - MLT2F LTR ERVL -517 146 12 7 797 1211 41 0 7 chr3 27865546 27865694 -131734089 - B1_Mus1 SINE Alu -1 147 1 7 797 351 150 0 0 chr3 27865746 27865806 -131733977 + (TG)n Simple_repeat Simple_repeat 1 60 0 7 797 698 250 6 36 chr3 27865806 27865972 -131733811 - RSINE1 SINE B4 -1 164 4 7 797 208 139 0 0 chr3 27866279 27866315 -131733468 + (TTTTG)n Simple_repeat Simple_repeat 3 38 0 7 797 773 209 0 20 chr3 27866354 27866505 -131733278 - B1_Mur2 SINE Alu 0 149 2 7 797 273 57 0 0 chr3 27866531 27866566 -131733217 + (TTTA)n Simple_repeat Simple_repeat 4 38 0 7 797 295 283 40 68 chr3 27866659 27866807 -131732976 - RSINE1 SINE B4 -14 151 8 7 797 683 176 15 8 chr3 27867108 27867240 -131732543 - B1_Mur2 SINE Alu 0 149 17 7 797 269 294 53 0 chr3 27867239 27867261 -131732522 - PB1D10 SINE Alu -16 101 42 7 797 273 204 19 0 chr3 27867261 27867315 -131732468 - ID_B1 SINE B4 -67 157 103 7 797 402 269 32 40 chr3 27867364 27867488 -131732295 - B4 SINE B4 -167 125 3 7 797 386 310 53 40 chr3 27868323 27868474 -131731309 - RSINE1 SINE B4 -2 163 11 7 797 526 169 127 30 chr3 27868546 27868680 -131731103 - MTD LTR MaLR -70 349 203 7 797 204 325 72 0 chr3 27868760 27868843 -131730940 + L2a LINE L2 3308 3396 -30 7 797 1353 232 46 6 chr3 27868994 27869323 -131730460 - ORR1E LTR MaLR -17 342 1 7 797 554 256 88 0 chr3 27870217 27870354 -131729429 + B1F SINE Alu 1 149 0 7 797 402 253 18 5 chr3 27870417 27870527 -131729256 - PB1D10 SINE Alu -25 124 12 7 797 280 330 11 0 chr3 27870443 27870537 -131729246 - ID_B1 SINE B4 -48 176 82 7 797 312 41 52 39 chr3 27870721 27870798 -131728985 + (TTTTG)n Simple_repeat Simple_repeat 2 79 0 7 797 759 288 24 5 chr3 27871325 27871538 -131728245 + ID_B1 SINE B4 8 224 0 7 797 336 48 0 0 chr3 27871699 27871741 -131728042 + (TG)n Simple_repeat Simple_repeat 1 42 0 7 797 815 159 28 0 chr3 27872657 27872802 -131726981 + B1_Mur3 SINE Alu 1 149 0 7 797 224 202 25 25 chr3 27872802 27872883 -131726900 + (CAA)n Simple_repeat Simple_repeat 1 81 0 7 797 216 67 0 0 chr3 27872965 27872995 -131726788 + (CA)n Simple_repeat Simple_repeat 2 31 0 7 797 456 298 192 0 chr3 27873056 27873264 -131726519 - MER47B DNA MER2_type -170 248 1 7 797 528 228 26 0 chr3 27873706 27873820 -131725963 + RSINE1 SINE B4 3 119 -46 7 797 268 225 67 0 chr3 27873822 27873911 -131725872 + (CAGAGA)n Simple_repeat Simple_repeat 1 95 0 7 797 193 299 144 0 chr3 27874202 27874299 -131725484 + L2 LINE L2 1425 1535 -1884 7 797 387 250 9 57 chr3 27874340 27874446 -131725337 - ID_B1 SINE B4 -121 103 3 7 797 334 234 87 87 chr3 27874604 27874754 -131725029 + MTD LTR MaLR 256 421 0 7 797 408 220 20 10 chr3 27874929 27875030 -131724753 - BC1_Mm scRNA scRNA -47 105 4 7 797 271 252 65 46 chr3 27875170 27875278 -131724505 + MIRb SINE MIR 93 202 -66 7 797 587 287 89 0 chr3 27875454 27875656 -131724127 - ID_B1 SINE B4 -3 221 2 7 797 1504 185 112 0 chr3 27875761 27876097 -131723686 + ORR1D1 LTR MaLR 1 419 0 7 797 535 302 17 11 chr3 27876315 27876496 -131723287 - ID_B1 SINE B4 -37 187 6 7 797 702 205 98 43 chr3 27876699 27876883 -131722900 + B3A SINE B2 3 196 -2 7 797 536 233 7 50 chr3 27877738 27877878 -131721905 - RSINE1 SINE B4 -24 141 8 7 797 387 212 0 36 chr3 27877948 27878031 -131721752 - ID_B1 SINE B4 0 224 145 7 797 353 277 92 128 chr3 27878108 27878381 -131721402 - B4 SINE B4 -2 290 28 7 797 548 278 32 32 chr3 27878416 27878572 -131721211 - RSINE1 SINE B4 -2 163 8 8 797 840 221 70 5 chr3 27878594 27878794 -131720989 - ID_B1 SINE B4 -2 222 10 8 797 280 333 60 35 chr3 27879157 27879356 -131720427 - MER2 DNA MER2_type 0 345 142 8 797 1888 44 0 0 chr3 27879830 27880057 -131719726 + L1Md_A LINE L1 6356 6582 0 8 797 779 284 37 107 chr3 27880081 27880381 -131719402 + B4 SINE B4 10 288 -4 8 797 250 232 42 42 chr3 27880507 27880579 -131719204 - RSINE1 SINE B4 -28 137 66 8 797 542 269 88 39 chr3 27880822 27881004 -131718779 - ID_B1 SINE B4 -8 216 26 8 797 369 0 0 0 chr3 27881062 27881103 -131718680 + (TTTA)n Simple_repeat Simple_repeat 3 43 0 8 797 284 279 52 31 chr3 27881108 27881204 -131718579 - PB1D10 SINE Alu -17 100 3 8 797 750 158 0 32 chr3 27882154 27882278 -131717505 + B1_Mur4 SINE Alu 11 130 -20 8 797 324 0 0 0 chr3 27882278 27882314 -131717469 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 8 797 543 267 6 39 chr3 27882317 27882473 -131717310 - RSINE1 SINE B4 -13 152 2 8 797 192 125 0 0 chr3 27883526 27883558 -131716225 + (T)n Simple_repeat Simple_repeat 1 32 0 8 797 246 176 0 0 chr3 27884331 27884382 -131715401 + (TG)n Simple_repeat Simple_repeat 1 51 0 8 797 694 206 15 0 chr3 27884712 27884843 -131714940 - B1_Mus2 SINE Alu -10 137 5 8 797 7751 70 13 15 chr3 27884881 27886433 -131713350 - L1_Mus1 LINE L1 -1 6566 5029 8 797 819 249 75 45 chr3 27888176 27888441 -131711342 + B4A SINE B4 2 274 -18 8 797 245 29 29 0 chr3 27888941 27888975 -131710808 + (TG)n Simple_repeat Simple_repeat 2 36 0 8 797 668 288 25 20 chr3 27888980 27889182 -131710601 - ID_B1 SINE B4 -19 205 3 8 797 609 274 7 0 chr3 27889243 27889389 -131710394 - B1_Mur3 SINE Alu 0 149 3 8 797 378 265 51 178 chr3 27889457 27889674 -131710109 - B4A SINE B4 -2 290 113 8 797 324 0 0 0 chr3 27889674 27889710 -131710073 + (TG)n Simple_repeat Simple_repeat 2 37 0 8 797 378 265 51 178 chr3 27889710 27889823 -131709960 - B4A SINE B4 -180 112 2 8 797 451 237 25 34 chr3 27890558 27890676 -131709107 - PB1D10 SINE Alu 0 117 1 8 797 22 0 0 0 chr3 27890678 27890700 -131709083 + AT_rich Low_complexity Low_complexity 1 22 0 8 797 223 167 0 23 chr3 27890700 27890743 -131709040 + (TG)n Simple_repeat Simple_repeat 1 42 0 8 797 301 270 192 62 chr3 27890778 27890908 -131708875 - RSINE1 SINE B4 -18 147 1 8 797 257 330 62 0 chr3 27890939 27891051 -131708732 - L1MB7 LINE L1 -25 6159 6041 8 797 230 344 52 45 chr3 27891430 27891564 -131708219 + MIRb SINE MIR 91 225 -43 8 797 201 242 11 21 chr3 27891827 27891920 -131707863 + CT-rich Low_complexity Low_complexity 2 93 0 8 797 1838 86 4 8 chr3 27891931 27892188 -131707595 - L1_Mus2 LINE L1 0 6566 6311 8 797 486 209 81 28 chr3 27892336 27892459 -131707324 - B1F2 SINE Alu -7 142 3 8 797 924 164 0 0 chr3 27892654 27892905 -131706878 + (TG)n Simple_repeat Simple_repeat 1 251 0 8 797 381 302 106 69 chr3 27893963 27894021 -131705762 + B4 SINE B4 2 74 -218 8 797 723 116 0 0 chr3 27894021 27894133 -131705650 + (CA)n Simple_repeat Simple_repeat 2 113 0 8 797 381 302 106 69 chr3 27894133 27894291 -131705492 + B4 SINE B4 75 226 -66 8 797 5279 143 48 19 chr3 27894332 27895240 -131704543 - Lx4B LINE L1 -7 7051 6117 8 797 19118 123 79 9 chr3 27895242 27895653 -131704130 - L1_Mur2 LINE L1 -1169 4708 4229 8 797 3362 28 5 5 chr3 27895653 27896049 -131703734 - MTA_Mm LTR MaLR 0 396 1 8 797 19118 123 79 9 chr3 27896049 27898078 -131701705 - L1_Mur2 LINE L1 -1649 4228 2050 8 797 279 0 0 0 chr3 27898078 27898109 -131701674 + (TG)n Simple_repeat Simple_repeat 2 32 0 8 797 19118 121 139 8 chr3 27898109 27899129 -131700654 - L1_Mur2 LINE L1 -3828 2049 943 8 797 555 284 18 6 chr3 27899279 27899442 -131700341 + B3 SINE B2 2 166 -50 8 797 1498 178 139 0 chr3 27900003 27900335 -131699448 + ORR1C2 LTR MaLR 1 378 -6 8 797 292 309 0 36 chr3 27900731 27900815 -131698968 - RSINE1 SINE B4 -84 81 1 8 797 830 209 83 28 chr3 27901152 27901369 -131698414 + B4A SINE B4 1 229 -63 8 797 605 56 11 0 chr3 27901371 27901461 -131698322 + (GA)n Simple_repeat Simple_repeat 2 92 0 8 797 723 186 100 0 chr3 27901539 27901679 -131698104 - ID_B1 SINE B4 -2 222 69 8 797 24 32 0 0 chr3 27901680 27901711 -131698072 + AT_rich Low_complexity Low_complexity 1 31 0 8 797 1234 48 0 0 chr3 27901987 27902132 -131697651 - B1_Mus2 SINE Alu 0 147 3 8 797 399 41 0 0 chr3 27902207 27902256 -131697527 + (TG)n Simple_repeat Simple_repeat 2 50 0 8 797 207 0 0 0 chr3 27902455 27902478 -131697305 + (TTTTG)n Simple_repeat Simple_repeat 5 27 0 8 797 305 47 23 0 chr3 27902530 27902573 -131697210 - ORR1B1 LTR MaLR -8 359 316 8 797 574 180 141 0 chr3 27902574 27902702 -131697081 - ORR1B1 LTR MaLR -248 146 1 8 797 344 274 116 0 chr3 27902939 27903034 -131696749 - PB1D10 SINE Alu -7 110 5 8 797 571 227 197 77 chr3 27903261 27903495 -131696288 - B4 SINE B4 -14 278 17 8 797 657 250 37 0 chr3 27904125 27904289 -131695494 + ID_B1 SINE B4 1 170 -54 8 797 3704 51 7 0 chr3 27904946 27905400 -131694383 - L1Md_F2 LINE L1 -1 6581 6125 8 797 239 0 32 0 chr3 27905803 27905834 -131693949 + (TCTA)n Simple_repeat Simple_repeat 1 32 0 8 797 744 302 69 62 chr3 27906156 27906368 -131693415 + B4 SINE B4 2 215 -77 8 797 300 53 0 0 chr3 27906368 27906406 -131693377 + (TAAA)n Simple_repeat Simple_repeat 2 39 0 8 797 744 302 69 62 chr3 27906406 27906482 -131693301 + B4 SINE B4 216 292 0 8 797 544 248 16 0 chr3 27907170 27907291 -131692492 - B1F SINE Alu -17 132 10 8 797 725 228 200 0 chr3 27907803 27907983 -131691800 - B3 SINE B2 0 216 1 8 797 332 246 66 73 chr3 27908211 27908347 -131691436 - B4 SINE B4 -63 229 95 8 797 4088 33 2 0 chr3 27908393 27908873 -131690910 + L1Md_F3 LINE L1 6104 6584 0 8 797 693 95 0 0 chr3 27909045 27909161 -131690622 + (CAGG)n Simple_repeat Simple_repeat 2 117 0 8 797 219 232 9 66 chr3 27909452 27909558 -131690225 + (TATAA)n Simple_repeat Simple_repeat 5 104 0 8 797 357 368 30 0 chr3 27909601 27909767 -131690016 + ID_B1 SINE B4 15 185 -39 8 797 356 221 0 65 chr3 27910873 27910965 -131688818 - B1_Mur4 SINE Alu -23 127 42 8 797 360 326 14 14 chr3 27910979 27911119 -131688664 - ID_B1 SINE B4 -1 223 84 8 797 395 278 0 9 chr3 27911727 27911843 -131687940 - PB1D9 SINE Alu -5 115 1 8 797 464 175 31 0 chr3 27912787 27912884 -131686899 + PB1D10 SINE Alu 18 117 0 8 797 1660 198 35 32 chr3 27913613 27913983 -131685800 + ORR1D1 LTR MaLR 4 374 0 8 797 324 158 0 0 chr3 27914047 27914104 -131685679 + (CA)n Simple_repeat Simple_repeat 1 57 0 8 797 435 261 27 0 chr3 27914104 27914215 -131685568 - B1F SINE Alu -9 140 27 8 797 472 283 0 8 chr3 27914122 27914243 -131685540 - ID_B1 SINE B4 -24 200 81 8 797 351 0 0 0 chr3 27914590 27914629 -131685154 + (TG)n Simple_repeat Simple_repeat 1 39 0 8 797 471 48 0 0 chr3 27914629 27914690 -131685093 + (GA)n Simple_repeat Simple_repeat 1 62 0 8 797 434 250 0 10 chr3 27914706 27914807 -131684976 - PB1D10 SINE Alu -16 101 2 8 797 981 226 24 0 chr3 27916093 27916301 -131683482 + B3 SINE B2 1 213 -3 8 797 1568 138 12 114 chr3 27916340 27916683 -131683100 - ORR1B2 LTR MaLR -59 308 1 8 797 469 236 118 0 chr3 27916684 27916794 -131682989 - MTE2b LTR MaLR -244 135 13 8 797 831 224 81 10 chr3 27917364 27917562 -131682221 - B3 SINE B2 0 216 5 8 798 207 162 0 0 chr3 27918631 27918668 -131681115 + A-rich Low_complexity Low_complexity 2 38 0 8 798 402 21 0 0 chr3 27918751 27918798 -131680985 + (GA)n Simple_repeat Simple_repeat 1 47 0 8 798 557 283 24 92 chr3 27919437 27919464 -131680319 + B3A SINE B2 7 32 -166 8 798 2122 126 78 20 chr3 27919464 27919821 -131679962 + ORR1C1 LTR MaLR 1 378 0 8 798 557 283 24 92 chr3 27919821 27919999 -131679784 + B3A SINE B2 33 198 0 8 798 24 32 0 0 chr3 27920413 27920444 -131679339 + AT_rich Low_complexity Low_complexity 1 31 0 8 798 183 271 0 0 chr3 27921508 27921578 -131678205 + (TG)n Simple_repeat Simple_repeat 1 70 0 8 798 422 267 35 0 chr3 27921586 27921702 -131678081 - RSINE1 SINE B4 -2 163 44 8 798 201 229 42 0 chr3 27922434 27922482 -131677301 + CT-rich Low_complexity Low_complexity 4 53 0 8 798 329 131 16 0 chr3 27922493 27922554 -131677229 + (TC)n Simple_repeat Simple_repeat 2 63 0 8 798 587 200 92 49 chr3 27922566 27922708 -131677075 - B1_Mur1 SINE Alu 0 148 1 8 798 313 276 38 0 chr3 27924522 27924627 -131675156 - PB1D10 SINE Alu -2 115 7 8 798 213 261 0 80 chr3 27924572 27924647 -131675136 - B4A SINE B4 -146 146 78 8 798 434 235 77 45 chr3 27924668 27924824 -131674959 + RSINE1 SINE B4 3 163 -2 8 798 1584 157 108 68 chr3 27924943 27925367 -131674416 + RMER10A LTR ERVL 1 441 -1 8 798 375 78 0 0 chr3 27925689 27925740 -131674043 + (A)n Simple_repeat Simple_repeat 1 51 0 8 798 350 242 119 104 chr3 27926165 27926299 -131673484 - ID_B1 SINE B4 -8 216 81 8 798 237 242 0 83 chr3 27926437 27926509 -131673274 + MIR SINE MIR 4 69 -193 8 798 709 287 72 14 chr3 27927061 27927354 -131672429 + Lx8 LINE L1 7161 7470 -3 8 798 365 208 165 10 chr3 27927817 27927914 -131671869 + ID_B1 SINE B4 104 215 -9 8 798 23 33 0 0 chr3 27927971 27928001 -131671782 + AT_rich Low_complexity Low_complexity 1 30 0 8 798 638 239 0 58 chr3 27928246 27928419 -131671364 - RSINE1 SINE B4 0 165 3 8 798 24 32 0 0 chr3 27929273 27929304 -131670479 + AT_rich Low_complexity Low_complexity 1 31 0 8 798 736 255 105 0 chr3 27929357 27929557 -131670226 + ID_B1 SINE B4 3 223 -1 9 798 769 255 161 17 chr3 27929656 27929947 -131669836 + MTE2b LTR MaLR 46 378 -1 9 798 333 0 0 0 chr3 27931085 27931122 -131668661 + (CA)n Simple_repeat Simple_repeat 2 38 0 9 798 640 284 117 12 chr3 27932032 27932288 -131667495 - B4A SINE B4 -8 284 2 9 798 337 268 115 96 chr3 27932301 27932458 -131667325 + ID_B1 SINE B4 63 222 -2 9 798 1140 52 0 0 chr3 27933416 27933551 -131666232 - B1_Mus2 SINE Alu -12 135 1 9 798 351 0 0 0 chr3 27933551 27933590 -131666193 + (T)n Simple_repeat Simple_repeat 1 39 0 9 798 22 0 0 0 chr3 27934772 27934794 -131664989 + AT_rich Low_complexity Low_complexity 1 22 0 9 798 422 277 98 33 chr3 27934797 27934950 -131664833 - RSINE1 SINE B4 0 165 3 9 798 455 314 0 0 chr3 27934960 27935065 -131664718 - B1F1 SINE Alu -7 142 38 9 798 214 257 192 41 chr3 27935098 27935171 -131664612 + RSINE1 SINE B4 17 100 -65 9 798 298 280 169 0 chr3 27935302 27935420 -131664363 - ID_B1 SINE B4 -2 222 85 9 798 257 211 208 10 chr3 27936308 27936404 -131663379 + B1F SINE Alu 2 116 -33 9 798 383 216 144 69 chr3 27936779 27936920 -131662863 - RMER20B LTR ERVK -207 420 261 9 798 608 230 180 58 chr3 27936920 27937248 -131662535 - RLTR9A LTR ERVK 0 368 1 9 798 383 216 144 69 chr3 27937248 27937280 -131662503 - RMER20B LTR ERVK -367 260 234 9 798 2617 113 58 22 chr3 27937648 27938093 -131661690 + RMER6B LTR ERVK 1 461 0 9 798 192 77 0 0 chr3 27938334 27938360 -131661423 + (TCC)n Simple_repeat Simple_repeat 2 27 0 9 798 415 254 74 68 chr3 27938363 27938511 -131661272 - ID_B1 SINE B4 0 224 76 9 798 22 35 0 0 chr3 27939201 27939230 -131660553 + AT_rich Low_complexity Low_complexity 1 29 0 9 798 331 302 139 42 chr3 27939233 27939399 -131660384 - B3A SINE B2 -16 182 1 9 798 594 263 0 8 chr3 27939516 27939650 -131660133 - ID_B1 SINE B4 -5 219 87 9 798 345 239 43 26 chr3 27940293 27940409 -131659374 - ID_B1 SINE B4 -25 199 82 9 798 785 208 87 21 chr3 27940423 27940664 -131659119 - RLTR12B LTR ERVK -6 522 266 9 798 911 250 34 44 chr3 27940679 27940976 -131658807 - RLTR12B LTR ERVK -188 340 47 9 798 347 232 60 12 chr3 27942328 27942411 -131657372 + PB1D9 SINE Alu 20 106 -14 9 798 471 264 18 0 chr3 27942604 27942714 -131657069 - PB1D7 SINE Alu -7 113 2 9 798 372 227 0 0 chr3 27942728 27942816 -131656967 + CT-rich Low_complexity Low_complexity 1 88 0 9 798 249 286 0 0 chr3 27943642 27943712 -131656071 - ID4 SINE ID -12 71 2 9 798 226 333 0 0 chr3 27944220 27944301 -131655482 - B3A SINE B2 -13 185 105 9 798 219 257 0 0 chr3 27944433 27944507 -131655276 + (TG)n Simple_repeat Simple_repeat 1 74 0 9 798 185 94 31 0 chr3 27944937 27944969 -131654814 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 9 798 422 189 156 0 chr3 27944976 27945066 -131654717 - RSINE1 SINE B4 -57 108 5 9 798 189 107 0 0 chr3 27945066 27945094 -131654689 + (T)n Simple_repeat Simple_repeat 1 28 0 9 798 342 0 0 0 chr3 27945098 27945136 -131654647 + (TG)n Simple_repeat Simple_repeat 1 38 0 9 798 306 0 0 0 chr3 27945136 27945169 -131654614 + (GA)n Simple_repeat Simple_repeat 1 34 0 9 798 1104 51 57 0 chr3 27946262 27946419 -131653364 + B2_Mm1t SINE B2 2 167 -26 9 798 268 189 0 54 chr3 27946477 27946533 -131653250 + B2_Mm2 SINE B2 49 101 -94 9 798 34 24 0 0 chr3 27946552 27946593 -131653190 + AT_rich Low_complexity Low_complexity 1 41 0 9 798 225 0 0 0 chr3 27947269 27947294 -131652489 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 9 798 615 245 7 0 chr3 27947342 27947485 -131652298 - ID_B1 SINE B4 -2 222 79 9 798 653 237 101 0 chr3 27947503 27947701 -131652082 + ID_B1 SINE B4 5 222 -2 9 798 258 125 0 0 chr3 27948028 27948076 -131651707 + (T)n Simple_repeat Simple_repeat 1 48 0 9 798 655 248 7 7 chr3 27948263 27948409 -131651374 - B1F SINE Alu -3 146 1 9 798 376 250 213 0 chr3 27948604 27948740 -131651043 - MER20 DNA MER1_type -15 204 40 9 798 217 25 73 24 chr3 27949119 27949160 -131650623 + (TTTTG)n Simple_repeat Simple_repeat 3 45 0 9 798 282 173 13 26 chr3 27949231 27949308 -131650475 + C-rich Low_complexity Low_complexity 2 77 0 9 798 277 239 146 36 chr3 27949463 27949628 -131650155 - L1MD2 LINE L1 -4877 1763 1581 9 798 351 0 0 0 chr3 27949878 27949917 -131649866 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 9 798 1093 60 0 0 chr3 27949918 27950052 -131649731 - B1_Mus2 SINE Alu -12 135 2 9 798 342 80 0 0 chr3 27950188 27950238 -131649545 + (TG)n Simple_repeat Simple_repeat 1 50 0 9 798 774 167 31 25 chr3 27950424 27950584 -131649199 - RSINE1 SINE B4 -3 162 2 9 798 256 286 0 0 chr3 27950594 27950664 -131649119 - L1MD2 LINE L1 -5214 1426 1357 9 798 548 242 15 23 chr3 27950820 27950951 -131648832 + RSINE1 SINE B4 11 140 -25 9 798 303 28 0 0 chr3 27950954 27950990 -131648793 + (CA)n Simple_repeat Simple_repeat 2 37 0 9 798 591 40 0 0 chr3 27950991 27951065 -131648718 + (GA)n Simple_repeat Simple_repeat 1 74 0 9 798 825 40 0 0 chr3 27951258 27951359 -131648424 + (TTCCC)n Simple_repeat Simple_repeat 4 104 0 9 798 857 145 20 20 chr3 27951363 27951511 -131648272 - B1_Mur3 SINE Alu -1 148 1 9 798 180 0 0 0 chr3 27951543 27951563 -131648220 + (T)n Simple_repeat Simple_repeat 1 20 0 9 798 266 198 198 0 chr3 27951632 27951728 -131648055 - B3 SINE B2 -1 215 101 9 798 659 87 0 55 chr3 27951859 27951968 -131647815 + B2_Mm2 SINE B2 14 116 -79 9 798 305 307 93 70 chr3 27951968 27952269 -131647514 - L1MD2 LINE L1 -5615 932 625 9 798 392 240 0 0 chr3 27952687 27952762 -131647021 - RSINE1 SINE B4 -89 76 2 9 798 384 353 31 5 chr3 27952840 27953031 -131646752 - L1MD LINE L1 -1827 4319 4124 9 798 426 304 19 70 chr3 27953145 27953285 -131646498 - B3A SINE B2 -4 194 63 9 798 3919 101 43 7 chr3 27953285 27954080 -131645703 - RLTR13A3 LTR ERVK 0 855 1 9 798 376 167 0 0 chr3 27954080 27954146 -131645637 - B3A SINE B2 -130 68 3 9 798 534 212 88 0 chr3 27954194 27954307 -131645476 + B3 SINE B2 7 129 -87 9 798 216 228 0 0 chr3 27955040 27955097 -131644686 + (TG)n Simple_repeat Simple_repeat 2 58 0 9 798 295 242 40 50 chr3 27955105 27955205 -131644578 - PB1D7 SINE Alu -5 115 17 9 798 451 295 73 23 chr3 27955521 27955698 -131644085 + ID_B1 SINE B4 8 193 -31 9 798 941 167 34 189 chr3 27955723 27955988 -131643795 - URR1B DNA MER1_type -1 224 1 9 798 628 321 72 25 chr3 27956120 27956398 -131643385 + B4A SINE B4 2 292 0 9 798 2365 57 181 9 chr3 27957415 27957753 -131642030 - MTA_Mm LTR MaLR 0 396 1 9 798 396 294 17 0 chr3 27957823 27957942 -131641841 - Lx9 LINE L1 -464 7180 7060 9 798 219 214 23 23 chr3 27957967 27958053 -131641730 + CT-rich Low_complexity Low_complexity 4 89 0 9 798 569 144 9 9 chr3 27958128 27958233 -131641550 - RLTR22_Mus LTR ERVK -1622 186 82 9 798 247 241 0 0 chr3 27958990 27959044 -131640739 + (TG)n Simple_repeat Simple_repeat 1 54 0 9 798 642 237 37 0 chr3 27959044 27959179 -131640604 - B1_Mur1 SINE Alu -8 141 2 9 798 1120 273 37 89 chr3 27959182 27959306 -131640477 - L1M2 LINE L1 -1155 4988 4877 9 798 180 0 0 0 chr3 27959306 27959326 -131640457 + (TTG)n Simple_repeat Simple_repeat 2 21 0 9 798 1120 273 37 89 chr3 27959326 27959743 -131640040 - L1M2 LINE L1 -1267 4876 4475 9 798 293 253 80 0 chr3 27959753 27959828 -131639955 - ID_B1 SINE B4 -15 209 129 9 798 232 305 30 22 chr3 27959928 27960062 -131639721 - L1_Rod LINE L1 -1429 4418 4284 9 798 409 294 88 42 chr3 27960649 27960912 -131638871 + B4A SINE B4 2 276 -16 9 798 425 266 86 48 chr3 27961325 27961511 -131638272 - B3A SINE B2 -2 196 4 9 798 1858 121 3 86 chr3 27961666 27962028 -131637755 - IAPLTR1_Mm LTR ERVK -5 332 1 9 798 58636 13 4 8 chr3 27962028 27968527 -131631256 - IAPEz-int LTR ERVK 0 6481 9 9 798 2016 134 41 41 chr3 27968527 27968892 -131630891 - IAPLTR1_Mm LTR ERVK -2 365 1 9 798 620 255 0 7 chr3 27969783 27969929 -131629854 - ID_B1 SINE B4 -3 221 77 9 798 719 287 85 8 chr3 27970518 27970902 -131628881 - Lx7 LINE L1 -1499 5974 5540 9 798 542 231 40 53 chr3 27970919 27971070 -131628713 - B1F2 SINE Alu 0 149 1 9 798 472 221 258 19 chr3 27971074 27971284 -131628499 - Lx7 LINE L1 -598 5591 5277 9 798 816 302 51 43 chr3 27971791 27972281 -131627502 + L1M4 LINE L1 5176 5669 -515 9 798 328 332 29 2 chr3 27972354 27972467 -131627316 + B1F SINE Alu 5 117 0 9 798 2943 165 113 21 chr3 27972481 27973100 -131626683 - RLTR17 LTR ERVK -16 676 1 9 798 243 260 0 0 chr3 27973101 27973151 -131626632 + B1F1 SINE Alu 85 134 -15 9 798 243 0 0 0 chr3 27973154 27973181 -131626602 + (TG)n Simple_repeat Simple_repeat 1 27 0 9 798 270 0 0 0 chr3 27973181 27973210 -131626573 + (GA)n Simple_repeat Simple_repeat 1 30 0 9 798 636 213 16 0 chr3 27973385 27973512 -131626271 + B1_Mur1 SINE Alu 6 134 -15 9 798 231 88 0 0 chr3 27973513 27973547 -131626236 + (GGA)n Simple_repeat Simple_repeat 1 34 0 9 798 978 297 88 16 chr3 27973547 27974157 -131625626 + L1M3 LINE L1 2932 3585 -2555 9 798 746 176 40 60 chr3 27974438 27974450 -131625333 - B1_Mur3 SINE Alu 0 149 138 9 798 215 31 0 30 chr3 27974450 27974483 -131625300 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 9 798 746 176 40 60 chr3 27974483 27974621 -131625162 - B1_Mur3 SINE Alu -12 137 3 9 798 1460 83 16 0 chr3 27974664 27974856 -131624927 - B2_Mm2 SINE B2 0 195 1 9 798 302 217 58 0 chr3 27975039 27975108 -131624675 + PB1D9 SINE Alu 14 86 -34 9 798 1057 202 155 29 chr3 27976234 27976550 -131623233 - ORR1E LTR MaLR -2 357 2 9 798 493 269 9 0 chr3 27976675 27976783 -131623000 + B1_Mur2 SINE Alu 6 114 -35 1 798 741 23 0 0 chr3 27976788 27976875 -131622908 + (GGGAGA)n Simple_repeat Simple_repeat 4 90 0 1 798 815 221 105 0 chr3 27977493 27977683 -131622100 - ID_B1 SINE B4 -8 216 7 1 798 432 37 0 0 chr3 27978483 27978537 -131621246 + (CA)n Simple_repeat Simple_repeat 2 55 0 1 798 614 309 6 0 chr3 27979398 27979560 -131620223 - RSINE1 SINE B4 0 165 3 1 798 294 261 0 0 chr3 27980233 27980302 -131619481 - B3A SINE B2 -129 69 1 1 798 269 314 35 0 chr3 27980311 27980397 -131619386 - L2a LINE L2 -5 3421 3333 1 798 410 301 73 7 chr3 27980914 27981051 -131618732 + B1F1 SINE Alu 4 149 0 1 798 367 234 39 0 chr3 27981334 27981411 -131618372 + ID4_ SINE ID 1 80 -3 1 798 387 326 90 28 chr3 27982725 27982870 -131616913 - RSINE1 SINE B4 -5 160 7 1 798 217 280 120 9 chr3 27983464 27983572 -131616211 - L2c LINE L2 -271 3116 2997 1 798 340 340 0 0 chr3 27985102 27985202 -131614581 - RMER15 LTR ERVL -105 470 371 1 798 1366 77 11 0 chr3 27985369 27985551 -131614232 + B2_Mm1t SINE B2 1 184 -9 1 798 222 37 0 0 chr3 27985803 27985830 -131613953 + (TATAG)n Simple_repeat Simple_repeat 1 27 0 1 798 207 0 0 0 chr3 27986964 27986987 -131612796 + (TTTTTA)n Simple_repeat Simple_repeat 2 24 0 1 798 236 171 4 0 chr3 27987150 27987203 -131612580 - B1F SINE Alu -7 142 60 1 798 780 266 122 20 chr3 27988495 27988741 -131611042 + B4 SINE B4 4 274 -18 1 798 341 250 194 22 chr3 27989144 27989283 -131610500 + RSINE1 SINE B4 3 165 0 1 798 1444 240 74 43 chr3 27989297 27989381 -131610402 - RLTR20B3 LTR ERVK 0 560 465 1 798 330 26 0 0 chr3 27989381 27989420 -131610363 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 798 1444 227 62 24 chr3 27989420 27989863 -131609920 - RLTR20B3 LTR ERVK -95 482 22 1 798 183 28 83 0 chr3 27990046 27990082 -131609701 + (CAAA)n Simple_repeat Simple_repeat 4 42 0 1 798 699 278 11 5 chr3 27991678 27991866 -131607917 + ID_B1 SINE B4 29 217 -7 1 798 231 240 0 0 chr3 27992218 27992268 -131607515 - ID4 SINE ID -13 70 21 1 798 430 267 46 33 chr3 27992395 27992546 -131607237 - ID_B1 SINE B4 -58 166 14 1 798 346 273 16 72 chr3 27992647 27992833 -131606950 + MIR SINE MIR 42 216 -46 1 798 403 253 95 58 chr3 27992917 27993107 -131606676 - Lx8 LINE L1 -229 7244 7036 1 798 250 179 0 0 chr3 27993104 27993143 -131606640 - Lx8 LINE L1 -520 6953 6915 1 798 313 328 89 11 chr3 27993140 27993319 -131606464 + Lx8 LINE L1 7269 7461 -12 1 798 451 251 4 0 chr3 27993326 27993436 -131606347 + ID_B1 SINE B4 81 187 -37 1 798 1026 169 21 5 chr3 27993506 27993696 -131606087 - URR1A DNA MER1_type -1 225 33 1 798 568 268 106 75 chr3 27994282 27994508 -131605275 - MTD LTR MaLR -145 274 42 1 798 1420 215 70 89 chr3 27994856 27995270 -131604513 - MTD LTR MaLR -13 406 1 1 798 1554 238 20 6 chr3 27996313 27996668 -131603115 - MTE2b LTR MaLR -4 375 16 1 798 639 0 0 0 chr3 27996806 27996877 -131602906 + (GGAA)n Simple_repeat Simple_repeat 4 74 0 1 798 1259 121 10 16 chr3 27997946 27998139 -131601644 + B2_Mm1t SINE B2 1 192 -1 1 798 240 130 0 0 chr3 27998464 27998510 -131601273 + (C)n Simple_repeat Simple_repeat 1 46 0 1 798 267 294 22 14 chr3 27999258 27999396 -131600387 - L1M4 LINE L1 -1111 5035 4897 1 798 637 268 44 31 chr3 27999773 28000000 -131599783 - MTEa LTR MaLR -2 377 148 1 798 316 324 28 14 chr3 28000002 28000146 -131599637 - MTEa LTR MaLR -233 146 1 1 798 437 216 190 0 chr3 28000403 28000519 -131599264 + B1_Mm SINE Alu 1 138 -9 2 798 282 29 0 0 chr3 28000568 28000603 -131599180 + (TC)n Simple_repeat Simple_repeat 2 36 0 3 798 459 35 0 0 chr3 28000603 28000659 -131599124 + (TA)n Simple_repeat Simple_repeat 2 58 0 4 798 281 229 13 67 chr3 28000778 28000853 -131598930 - B4 SINE B4 -220 72 2 5 798 1236 48 0 0 chr3 28002419 28002566 -131597217 + B1_Mus2 SINE Alu 1 147 0 6 798 29 28 0 0 chr3 28002591 28002627 -131597156 + AT_rich Low_complexity Low_complexity 1 36 0 7 798 424 274 34 50 chr3 28002757 28002876 -131596907 - RSINE1 SINE B4 0 165 49 8 798 777 298 65 85 chr3 28003224 28003370 -131596413 + ORR1E LTR MaLR 13 138 -221 9 798 730 262 27 54 chr3 28003370 28003592 -131596191 - ID_B1 SINE B4 -5 219 4 1 798 777 298 65 85 chr3 28003592 28003797 -131595986 + ORR1E LTR MaLR 139 357 -2 9 798 243 0 0 0 chr3 28003914 28003941 -131595842 + (CA)n Simple_repeat Simple_repeat 2 28 0 1 798 642 292 62 14 chr3 28005220 28005493 -131594290 + B4 SINE B4 3 292 0 1 798 22 56 0 0 chr3 28005532 28005568 -131594215 + AT_rich Low_complexity Low_complexity 1 36 0 1 798 31 0 0 0 chr3 28005648 28005679 -131594104 + AT_rich Low_complexity Low_complexity 1 31 0 1 798 518 106 0 34 chr3 28005685 28005773 -131594010 - B1_Mus2 SINE Alu -1 146 62 1 798 542 296 110 28 chr3 28005793 28006227 -131593556 + L1MB3 LINE L1 5701 6179 -1 1 798 382 323 53 35 chr3 28007270 28007440 -131592343 - RMER30 DNA MER1_type -20 182 10 1 798 441 291 2 66 chr3 28007603 28007758 -131592025 + RSINE1 SINE B4 3 150 -15 1 798 497 302 0 0 chr3 28007804 28007920 -131591863 + RSINE1 SINE B4 3 118 -47 1 798 279 0 0 0 chr3 28007923 28007954 -131591829 + (TC)n Simple_repeat Simple_repeat 1 31 0 2 798 294 29 0 0 chr3 28007954 28007988 -131591795 + (CA)n Simple_repeat Simple_repeat 1 35 0 2 798 24 0 0 0 chr3 28008001 28008025 -131591758 + AT_rich Low_complexity Low_complexity 1 24 0 2 798 248 258 0 0 chr3 28008234 28008296 -131591487 + (TA)n Simple_repeat Simple_repeat 1 62 0 2 798 210 37 0 0 chr3 28008940 28008967 -131590816 + (TCTCTG)n Simple_repeat Simple_repeat 2 28 0 2 798 189 214 0 0 chr3 28008970 28009012 -131590771 + C-rich Low_complexity Low_complexity 1 42 0 2 798 447 139 105 0 chr3 28009013 28009099 -131590684 - B1F2 SINE Alu -21 128 34 2 798 493 238 126 0 chr3 28009468 28009619 -131590164 - ID_B1 SINE B4 -10 214 45 2 798 26 30 0 0 chr3 28010126 28010159 -131589624 + AT_rich Low_complexity Low_complexity 1 33 0 2 798 287 296 80 60 chr3 28011259 28011410 -131588373 - MTEa LTR MaLR -161 218 65 2 798 876 275 81 49 chr3 28011942 28012792 -131586991 + L1MB7 LINE L1 5211 6109 -75 3 798 233 311 33 0 chr3 28012808 28012869 -131586914 + ID_B1 SINE B4 81 143 -81 3 798 227 300 0 14 chr3 28013120 28013191 -131586592 + ID_B1 SINE B4 148 217 -7 3 798 397 250 18 9 chr3 28013228 28013337 -131586446 + PB1D9 SINE Alu 9 118 -2 3 798 212 383 12 0 chr3 28013397 28013478 -131586305 - ID4_ SINE ID 0 83 2 3 798 664 181 93 16 chr3 28013584 28013713 -131586070 + B1_Mur2 SINE Alu 3 141 -8 3 798 242 73 24 0 chr3 28014790 28014831 -131584952 + (TTTTTG)n Simple_repeat Simple_repeat 2 43 0 3 798 342 98 0 0 chr3 28015294 28015345 -131584438 + (TCCC)n Simple_repeat Simple_repeat 4 54 0 3 798 1256 78 0 16 chr3 28015368 28015551 -131584232 + (TTCTC)n Simple_repeat Simple_repeat 1 180 0 3 798 1254 95 0 0 chr3 28015557 28016096 -131583687 + (TCTCC)n Simple_repeat Simple_repeat 1 539 0 3 798 565 132 9 19 chr3 28016097 28016177 -131583606 + polypyrimidine Low_complexity Low_complexity 31 110 0 3 798 1350 67 0 0 chr3 28016177 28016355 -131583428 + (TCTCC)n Simple_repeat Simple_repeat 3 180 0 4 798 216 0 0 0 chr3 28016355 28016378 -131583405 + (TTCTC)n Simple_repeat Simple_repeat 2 25 0 4 798 565 132 9 19 chr3 28016378 28016404 -131583379 + polypyrimidine Low_complexity Low_complexity 5 30 0 4 798 540 0 0 0 chr3 28016404 28016464 -131583319 + (TTTC)n Simple_repeat Simple_repeat 4 63 0 4 798 548 212 15 29 chr3 28016755 28016891 -131582892 - RSINE1 SINE B4 -17 148 15 4 798 253 299 26 0 chr3 28016969 28017046 -131582737 + CT-rich Low_complexity Low_complexity 5 83 0 4 798 188 215 111 97 chr3 28017091 28017163 -131582620 + MER5A DNA MER1_type 117 189 0 4 798 540 260 109 57 chr3 28017531 28017723 -131582060 + RMER30 DNA MER1_type 1 202 0 4 798 892 258 82 0 chr3 28018490 28018723 -131581060 - Lx8 LINE L1 -201 7272 7021 4 798 1092 259 63 25 chr3 28019013 28019378 -131580405 + MTD LTR MaLR 26 404 -15 4 798 207 69 0 0 chr3 28019452 28019481 -131580302 + (TG)n Simple_repeat Simple_repeat 2 30 0 5 798 3970 183 42 37 chr3 28019984 28020976 -131578807 + Lx7 LINE L1 5056 6053 -1643 5 798 5283 199 147 25 chr3 28020980 28022309 -131577474 + Lx7 LINE L1 6206 7696 0 5 798 384 311 22 63 chr3 28023222 28023445 -131576338 - MLT1L LTR MaLR -370 240 27 5 798 180 0 0 0 chr3 28023783 28023803 -131575980 + (CATA)n Simple_repeat Simple_repeat 4 23 0 5 798 302 224 65 13 chr3 28024041 28024118 -131575665 + RSINE1 SINE B4 65 145 -20 5 798 1122 273 57 61 chr3 28024608 28025206 -131574577 - RLTR18B LTR ERVK -47 569 1 5 798 908 127 0 0 chr3 28025875 28026017 -131573766 - L1_Mm LINE L1 -521 5362 5221 5 798 343 197 13 13 chr3 28026070 28026147 -131573636 - B4 SINE B4 -214 78 2 5 798 1821 156 70 20 chr3 28026289 28026630 -131573153 - RMER1B Other Other 0 1066 709 5 798 272 317 62 43 chr3 28027803 28028014 -131571769 + L1M5 LINE L1 5614 5828 -296 5 798 1149 208 14 0 chr3 28028305 28028526 -131571257 + Lx6 LINE L1 7226 7449 -11 6 798 318 337 31 66 chr3 28028826 28028995 -131570788 + MIRc SINE MIR 4 169 -99 6 798 418 203 0 0 chr3 28029499 28029573 -131570210 + ID4_ SINE ID 2 75 -8 6 798 447 267 19 0 chr3 28030186 28030291 -131569492 - PB1D10 SINE Alu -10 107 1 6 798 22 0 0 0 chr3 28032280 28032302 -131567481 + AT_rich Low_complexity Low_complexity 1 22 0 6 798 241 293 89 15 chr3 28032580 28032715 -131567068 + L2a LINE L2 3277 3421 -5 6 798 573 364 29 0 chr3 28033550 28033756 -131566027 + B4A SINE B4 21 232 -60 6 798 2497 98 8 8 chr3 28033757 28034116 -131565667 + RLTR15 LTR ERVK 1 359 0 6 798 294 152 0 0 chr3 28034729 28034775 -131565008 + B1_Mur4 SINE Alu 44 89 -61 6 798 265 180 78 20 chr3 28034906 28035008 -131564775 + MYSERV6-int LTR ERVK 6411 6518 -2441 6 798 21 0 0 0 chr3 28035058 28035079 -131564704 + AT_rich Low_complexity Low_complexity 1 21 0 7 798 526 207 8 55 chr3 28035080 28035208 -131564575 + B1_Mur3 SINE Alu 18 139 -10 7 798 189 107 0 0 chr3 28035210 28035238 -131564545 + (TAA)n Simple_repeat Simple_repeat 2 29 0 7 798 6795 239 45 60 chr3 28035455 28035658 -131564125 + MYSERV16_I-int LTR ERVK 6 206 -2120 7 798 408 40 0 0 chr3 28035658 28035708 -131564075 + (TG)n Simple_repeat Simple_repeat 2 51 0 7 798 6795 239 45 60 chr3 28035708 28037580 -131562203 + MYSERV16_I-int LTR ERVK 207 2053 -273 7 798 1212 41 7 0 chr3 28037580 28037726 -131562057 - B1_Mus1 SINE Alu 0 148 2 7 798 6795 239 45 60 chr3 28037726 28037920 -131561863 + MYSERV16_I-int LTR ERVK 2054 2240 -86 7 798 1019 108 22 17 chr3 28037957 28038135 -131561648 + RLTR15 LTR ERVK 1 179 -180 7 798 522 140 0 11 chr3 28038145 28038239 -131561544 - RLTR15 LTR ERVK -49 310 218 7 798 218 271 0 41 chr3 28038331 28038404 -131561379 + (CATA)n Simple_repeat Simple_repeat 3 72 0 7 798 40 21 0 0 chr3 28038449 28038496 -131561287 + AT_rich Low_complexity Low_complexity 1 47 0 7 798 353 284 8 49 chr3 28038636 28038758 -131561025 - B3A SINE B2 0 198 82 8 798 258 318 75 91 chr3 28038847 28039012 -131560771 - MLT1A LTR MaLR -93 315 165 8 798 1910 153 3 10 chr3 28039012 28039322 -131560461 + RLTR10E LTR ERVK 1 308 -3 8 798 254 281 120 18 chr3 28039322 28039464 -131560319 - MLT1A LTR MaLR -244 164 13 8 798 600 279 116 66 chr3 28039880 28040122 -131559661 - B4A SINE B4 -36 256 3 8 798 318 195 193 11 chr3 28040242 28040330 -131559453 + ID_B1 SINE B4 102 205 -19 8 798 21 0 0 0 chr3 28040497 28040518 -131559265 + AT_rich Low_complexity Low_complexity 1 21 0 8 798 279 0 0 0 chr3 28041747 28041778 -131558005 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 8 798 1040 44 0 0 chr3 28041778 28041913 -131557870 - B1_Mus2 SINE Alu -3 144 10 8 798 2344 82 3 109 chr3 28041942 28042310 -131557473 - ORR1A4 LTR MaLR 0 329 1 8 798 582 15 0 0 chr3 28043189 28043256 -131556527 + (GA)n Simple_repeat Simple_repeat 2 68 0 8 798 361 233 42 33 chr3 28044055 28044175 -131555608 - L1ME3A LINE L1 -3 6170 6050 9 798 332 269 9 36 chr3 28044179 28044291 -131555492 + GA-rich Low_complexity Low_complexity 1 109 0 9 798 470 275 25 81 chr3 28044752 28044877 -131554906 + L1M2 LINE L1 5552 5672 -619 9 798 1259 259 28 22 chr3 28044877 28045232 -131554551 + ORR1E LTR MaLR 3 359 0 9 798 470 275 25 81 chr3 28045232 28045304 -131554479 + L1M2 LINE L1 5673 5738 -553 9 798 1310 221 50 7 chr3 28045341 28045642 -131554141 + MT2A LTR ERVL 5 318 -215 9 798 437 200 248 0 chr3 28045643 28045768 -131554015 - B3 SINE B2 -60 156 1 9 798 578 148 21 0 chr3 28046860 28046981 -131552802 + RLTR20B1 LTR ERVK 331 466 -111 9 798 592 227 7 43 chr3 28047184 28047322 -131552461 - MLT1F LTR MaLR -285 263 131 9 798 291 250 24 24 chr3 28047658 28047740 -131552043 + B1F1 SINE Alu 62 143 -6 9 798 2513 186 29 38 chr3 28048185 28048653 -131551130 + RLTR20B1 LTR ERVK 1 471 -92 9 798 441 0 0 0 chr3 28048653 28048702 -131551081 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 798 2513 186 29 38 chr3 28048702 28048786 -131550997 + RLTR20B1 LTR ERVK 472 548 -15 9 799 368 40 0 20 chr3 28049811 28049862 -131549921 + (TTTA)n Simple_repeat Simple_repeat 3 52 0 1 799 523 182 8 8 chr3 28049870 28049997 -131549786 + (TGGA)n Simple_repeat Simple_repeat 1 127 0 1 799 2447 251 94 19 chr3 28050043 28050765 -131549018 - RMER1C Other Other -138 1204 49 1 799 523 255 39 55 chr3 28050755 28051031 -131548752 - RMER1C Other Other -1053 289 133 1 799 336 328 38 8 chr3 28051112 28051244 -131548539 - LTR16E1 LTR ERVL -6 532 397 1 799 734 112 0 9 chr3 28051244 28051352 -131548431 + L1VL1 LINE L1 160 266 -6156 1 799 21427 79 19 16 chr3 28051352 28055146 -131544637 + L1Md_F LINE L1 277 4086 -1797 1 799 1782 189 73 163 chr3 28055145 28055403 -131544380 + L1_Mur3 LINE L1 3441 3699 -2181 1 799 335 138 0 0 chr3 28055403 28055461 -131544322 + B1_Mm SINE Alu 88 145 -2 1 799 1782 189 73 163 chr3 28055461 28055673 -131544110 + L1_Mur3 LINE L1 3700 3913 -1967 1 799 3204 132 115 54 chr3 28055673 28056249 -131543534 - RMER19C LTR ERVK 0 611 1 1 799 1782 189 73 163 chr3 28056249 28056339 -131543444 + L1_Mur3 LINE L1 3914 4002 -1878 1 799 258 302 64 36 chr3 28057195 28057305 -131542478 - RMER20B LTR ERVK -38 589 477 1 799 689 242 86 14 chr3 28057349 28057571 -131542212 - RMER20B LTR ERVK -263 364 127 1 799 2406 197 37 12 chr3 28057749 28058232 -131541551 - MERVK26-int LTR ERVK -28 6891 6397 1 799 320 198 0 110 chr3 28058224 28058315 -131541468 - MYSERV-int LTR ERVK -1764 4786 4706 1 799 1272 272 79 40 chr3 28058300 28058872 -131540911 - MYSERV-int LTR ERVK -1930 4620 4124 1 799 306 0 0 0 chr3 28059200 28059234 -131540549 + (TA)n Simple_repeat Simple_repeat 2 35 0 1 799 2268 199 57 29 chr3 28059543 28059635 -131540148 - RLTR20B1 LTR ERVK 0 563 472 1 799 273 29 0 0 chr3 28059635 28059669 -131540114 + (CA)n Simple_repeat Simple_repeat 2 35 0 1 799 2268 199 57 29 chr3 28059669 28060124 -131539659 - RLTR20B1 LTR ERVK -92 471 2 1 799 405 191 11 56 chr3 28060720 28060809 -131538974 - RMER17C-int LTR ERVK -702 2536 2452 1 799 296 169 66 88 chr3 28061029 28061120 -131538663 + B4A SINE B4 1 89 -203 1 799 358 278 103 71 chr3 28061366 28061521 -131538262 + B4A SINE B4 38 197 -95 1 799 422 231 123 53 chr3 28062227 28062341 -131537442 + RSINE1 SINE B4 3 124 -41 1 799 566 305 149 33 chr3 28062983 28063407 -131536376 + L1MB7 LINE L1 5711 6183 -1 1 799 275 320 114 51 chr3 28063407 28063465 -131536318 - B3A SINE B2 -8 208 151 1 799 2421 93 6 3 chr3 28063465 28063790 -131535993 - ORR1A2 LTR MaLR 0 327 2 1 799 275 308 114 61 chr3 28063790 28063865 -131535918 - B3A SINE B2 -48 150 64 1 799 507 228 10 0 chr3 28063922 28064023 -131535760 + ID_B1 SINE B4 90 191 -33 1 799 377 299 34 0 chr3 28064023 28064039 -131535744 + B1_Mur3 SINE Alu 9 129 -20 1 799 346 283 111 0 chr3 28064161 28064260 -131535523 + PB1D9 SINE Alu 4 113 -7 1 799 210 71 0 0 chr3 28064279 28064307 -131535476 + (GGGA)n Simple_repeat Simple_repeat 2 29 0 1 799 344 250 82 12 chr3 28064413 28064498 -131535285 + B3 SINE B2 1 91 -125 1 799 549 42 0 0 chr3 28064510 28064582 -131535201 + (CA)n Simple_repeat Simple_repeat 2 73 0 1 799 905 252 72 15 chr3 28065568 28065830 -131533953 + B4 SINE B4 2 278 -14 1 799 779 254 18 53 chr3 28066135 28066360 -131533423 - ID_B1 SINE B4 -7 217 1 1 799 368 250 0 0 chr3 28067784 28067856 -131531927 - B3A SINE B2 -84 114 43 1 799 852 199 34 17 chr3 28068023 28068202 -131531581 - RMER10A LTR ERVL -260 182 1 1 799 245 284 40 0 chr3 28068314 28068388 -131531395 + MIR SINE MIR 65 141 -67 1 799 583 212 98 0 chr3 28068644 28068776 -131531007 + ID_B1 SINE B4 79 223 -1 1 799 595 188 23 12 chr3 28068886 28069058 -131530725 + GA-rich Low_complexity Low_complexity 2 175 0 1 799 631 247 111 20 chr3 28069385 28069583 -131530200 + ID_B1 SINE B4 2 217 -7 1 799 363 276 96 26 chr3 28070300 28070456 -131529327 + MER20 DNA MER1_type 20 186 -33 1 799 567 0 0 0 chr3 28071257 28071320 -131528463 + (TTTC)n Simple_repeat Simple_repeat 2 64 0 1 799 305 289 17 26 chr3 28071587 28071704 -131528079 - ID_B1 SINE B4 -2 222 107 1 799 809 188 7 0 chr3 28072214 28072358 -131527425 + URR1B DNA MER1_type 1 145 -80 1 799 250 309 6 79 chr3 28072358 28072369 -131527414 - CYRA11_Mm Unknown Y-chromosome -222 332 243 1 799 751 40 0 0 chr3 28072365 28072465 -131527318 + B1_Mm SINE Alu 47 146 -1 1 799 399 154 0 0 chr3 28072456 28072534 -131527249 + URR1B DNA MER1_type 143 220 -5 1 799 483 324 42 24 chr3 28072589 28072801 -131526982 - ID_B1 SINE B4 -7 217 2 1 799 280 229 33 0 chr3 28072826 28072887 -131526896 + MER5A DNA MER1_type 127 189 0 1 799 232 169 30 30 chr3 28073312 28073379 -131526404 + CT-rich Low_complexity Low_complexity 4 70 0 1 799 1072 117 0 16 chr3 28073397 28073486 -131526297 + (TTCC)n Simple_repeat Simple_repeat 1 88 0 1 799 1108 107 6 11 chr3 28073486 28073666 -131526117 + (TTTC)n Simple_repeat Simple_repeat 1 179 0 1 799 1072 117 0 16 chr3 28073666 28073759 -131526024 + (TTCC)n Simple_repeat Simple_repeat 1 92 0 1 799 216 274 66 77 chr3 28073773 28073864 -131525919 - PB1D10 SINE Alu -6 111 22 1 799 557 247 94 24 chr3 28073787 28073957 -131525826 - ID_B1 SINE B4 -40 184 3 1 799 420 20 0 0 chr3 28074299 28074348 -131525435 + (TG)n Simple_repeat Simple_repeat 1 49 0 1 799 778 270 133 27 chr3 28074383 28074646 -131525137 - B4A SINE B4 0 292 2 1 799 225 139 0 0 chr3 28074716 28074759 -131525024 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 799 372 152 0 0 chr3 28075115 28075181 -131524602 + GA-rich Low_complexity Low_complexity 1 66 0 1 799 420 20 0 0 chr3 28076016 28076065 -131523718 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 799 188 143 58 23 chr3 28076065 28076151 -131523632 + (TA)n Simple_repeat Simple_repeat 1 89 0 1 799 205 156 72 10 chr3 28076174 28076271 -131523512 + (TA)n Simple_repeat Simple_repeat 2 104 0 1 799 838 240 41 10 chr3 28076277 28076471 -131523312 - B3 SINE B2 -16 200 1 1 799 953 241 102 57 chr3 28076541 28076650 -131523133 + Lx8 LINE L1 7123 7236 -237 1 799 192 40 0 0 chr3 28076650 28076675 -131523108 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 1 799 953 241 102 57 chr3 28076675 28076900 -131522883 + Lx8 LINE L1 7237 7472 -1 1 799 463 274 114 53 chr3 28077710 28077898 -131521885 + RMER10A LTR ERVL 1 192 -250 1 799 189 0 0 0 chr3 28077898 28077919 -131521864 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 1 799 463 271 19 119 chr3 28077919 28078058 -131521725 + RMER10A LTR ERVL 176 298 -144 1 799 212 241 0 0 chr3 28078268 28078322 -131521461 + PB1D7 SINE Alu 19 72 -48 1 799 238 239 0 53 chr3 28078351 28078426 -131521357 + ID4 SINE ID 12 82 -1 1 799 215 291 18 0 chr3 28078426 28078481 -131521302 + GA-rich Low_complexity Low_complexity 1 56 0 1 799 21 0 0 0 chr3 28079111 28079132 -131520651 + AT_rich Low_complexity Low_complexity 1 21 0 1 799 348 238 164 0 chr3 28079484 28079606 -131520177 - MTE2b LTR MaLR -37 342 201 1 799 359 313 15 37 chr3 28079636 28079772 -131520011 - MTE-int LTR MaLR -606 974 842 1 799 214 254 0 33 chr3 28080315 28080376 -131519407 + GA-rich Low_complexity Low_complexity 4 62 0 1 799 383 266 27 9 chr3 28080431 28080541 -131519242 + ORR1E LTR MaLR 96 207 -152 1 799 21 0 0 0 chr3 28080558 28080579 -131519204 + AT_rich Low_complexity Low_complexity 1 21 0 1 799 238 100 0 0 chr3 28080605 28080645 -131519138 + ORR1E LTR MaLR 331 370 0 1 799 420 20 0 0 chr3 28081486 28081535 -131518248 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 799 275 338 0 0 chr3 28081539 28081616 -131518167 - B4 SINE B4 -2 290 214 1 799 615 253 19 157 chr3 28081624 28081840 -131517943 - B3A SINE B2 -1 194 9 1 799 704 237 35 17 chr3 28081840 28082012 -131517771 - B4 SINE B4 -86 206 32 1 799 950 254 35 35 chr3 28082020 28082305 -131517478 - ORR1D2 LTR MaLR -47 323 39 1 799 210 71 0 0 chr3 28082608 28082636 -131517147 + (GGA)n Simple_repeat Simple_repeat 2 29 0 1 799 1848 159 50 32 chr3 28083064 28083441 -131516342 - ORR1C2 LTR MaLR 0 384 1 1 799 447 238 31 23 chr3 28083553 28083682 -131516101 + B1F1 SINE Alu 18 147 -2 1 799 281 350 48 0 chr3 28083683 28083786 -131515997 + B3A SINE B2 9 116 -82 1 799 410 182 0 13 chr3 28083864 28083942 -131515841 - B1_Mus2 SINE Alu -25 122 46 1 799 247 207 24 24 chr3 28083999 28084083 -131515700 + GA-rich Low_complexity Low_complexity 4 87 0 1 799 656 148 0 8 chr3 28084274 28084397 -131515386 + (TA)n Simple_repeat Simple_repeat 2 123 0 1 799 277 288 0 0 chr3 28085213 28085286 -131514497 - Charlie8 DNA MER1_type 0 2428 2356 1 799 271 254 0 17 chr3 28085319 28085379 -131514404 + B4 SINE B4 114 172 -120 1 799 318 26 0 0 chr3 28085383 28085422 -131514361 + (CAA)n Simple_repeat Simple_repeat 2 40 0 1 799 210 37 0 0 chr3 28085523 28085550 -131514233 + (CAGAGA)n Simple_repeat Simple_repeat 2 28 0 1 799 212 333 45 36 chr3 28085623 28085735 -131514048 - MIRm SINE MIR -114 162 50 1 799 625 264 15 61 chr3 28086146 28086344 -131513439 + B3 SINE B2 3 191 -25 1 799 1445 76 0 5 chr3 28086933 28087118 -131512665 - B2_Mm2 SINE B2 -7 188 5 1 799 1437 179 142 29 chr3 28087126 28087247 -131512536 + ORR1C2 LTR MaLR 1 131 -253 1 799 378 0 0 0 chr3 28087247 28087289 -131512494 + (TG)n Simple_repeat Simple_repeat 1 42 0 1 799 1437 179 142 29 chr3 28087289 28087512 -131512271 + ORR1C2 LTR MaLR 132 383 -1 1 799 242 258 0 16 chr3 28087552 28087615 -131512168 + G-rich Low_complexity Low_complexity 4 65 0 1 799 284 194 63 16 chr3 28087822 28087885 -131511898 + L1MEc LINE L1 685 750 -5650 1 799 23 68 0 0 chr3 28088232 28088276 -131511507 + AT_rich Low_complexity Low_complexity 1 44 0 1 799 306 295 173 44 chr3 28088376 28088741 -131511042 + LTR16A1 LTR ERVL 43 454 -2 1 799 280 241 33 44 chr3 28088814 28088905 -131510878 + ERVL-B4-int LTR ERVL 2674 2763 -2904 1 799 432 231 12 149 chr3 28089388 28089556 -131510227 + RSINE1 SINE B4 4 148 -17 1 799 647 272 50 21 chr3 28089606 28089846 -131509937 + Ricksha_c DNA MuDR 1472 1718 -330 1 799 621 119 0 0 chr3 28089862 28089963 -131509820 + (TG)n Simple_repeat Simple_repeat 1 101 0 2 799 347 183 192 0 chr3 28089966 28090070 -131509713 - B3A SINE B2 -74 124 1 2 799 524 242 98 51 chr3 28090074 28090195 -131509588 + Ricksha_c DNA MuDR 1716 1860 -188 1 799 598 297 14 76 chr3 28090195 28090406 -131509377 - RMER30 DNA MER1_type -3 199 2 2 799 524 242 98 51 chr3 28090406 28090558 -131509225 + Ricksha_c DNA MuDR 1861 2002 -46 1 799 1640 309 87 12 chr3 28090593 28091384 -131508399 + ERVL-B4-int LTR ERVL 2794 3700 -2057 1 799 3917 138 14 23 chr3 28091384 28092090 -131507693 - RMER6A LTR ERVK 0 756 57 2 799 516 202 24 80 chr3 28092142 28092311 -131507472 + MTE2a LTR MaLR 204 377 -2 2 799 416 322 33 0 chr3 28092558 28092710 -131507073 + MLT2B5 LTR ERVL 24 180 -537 2 799 357 310 115 0 chr3 28092744 28092857 -131506926 + MLT2B5 LTR ERVL 295 420 -134 2 799 2142 266 84 21 chr3 28092886 28093588 -131506195 + Lx8 LINE L1 6453 7198 -275 2 799 348 326 0 0 chr3 28093598 28093696 -131506087 + B3A SINE B2 2 99 -99 2 799 334 273 97 26 chr3 28093966 28094120 -131505663 + RMER10A LTR ERVL 253 417 -25 2 799 252 247 40 61 chr3 28094131 28094230 -131505553 + B3A SINE B2 91 187 -11 2 799 288 294 11 11 chr3 28094615 28094708 -131505075 + MER21B LTR ERV1 511 603 -260 2 799 21 0 0 0 chr3 28094958 28094979 -131504804 + GC_rich Low_complexity Low_complexity 1 21 0 2 799 342 0 0 0 chr3 28095398 28095436 -131504347 + (CA)n Simple_repeat Simple_repeat 2 39 0 2 799 652 195 16 8 chr3 28095452 28095581 -131504202 - B3 SINE B2 -86 130 1 2 799 1047 181 39 5 chr3 28096263 28096468 -131503315 - B3 SINE B2 -1 215 4 2 799 727 267 58 18 chr3 28096505 28096753 -131503030 + L1MA9 LINE L1 5340 5596 -587 2 799 2161 107 12 16 chr3 28096753 28097076 -131502707 + ORR1A4 LTR MaLR 4 325 -4 2 799 586 298 47 57 chr3 28097076 28097123 -131502660 + L1MA9 LINE L1 5597 5632 -551 2 799 3057 29 10 70 chr3 28097123 28097538 -131502245 + RLTR10 LTR ERVK 1 390 0 2 799 7862 41 7 28 chr3 28097548 28098526 -131501257 + RLTR10-int LTR ERVK 41 998 -989 2 799 390 237 76 38 chr3 28098571 28098720 -131501063 + RLTR10-int LTR ERVK 1462 1594 -5987 2 799 8960 18 1 0 chr3 28098802 28099796 -131499987 + RLTR10-int LTR ERVK 990 1984 -3 2 799 3057 29 10 70 chr3 28099798 28100213 -131499570 + RLTR10 LTR ERVK 1 390 0 2 799 418 329 34 0 chr3 28100215 28100364 -131499419 + L1MA9 LINE L1 5629 5782 -509 2 799 288 0 0 0 chr3 28100364 28100396 -131499387 + (CA)n Simple_repeat Simple_repeat 2 33 0 2 799 670 112 9 18 chr3 28100441 28100550 -131499233 - B1_Mur4 SINE Alu 0 150 43 2 799 192 184 0 0 chr3 28100580 28100629 -131499154 + C-rich Low_complexity Low_complexity 5 53 0 2 799 277 77 0 0 chr3 28100629 28100668 -131499115 - PB1D9 SINE Alu -65 55 17 2 799 433 325 49 77 chr3 28100701 28100884 -131498899 + B3A SINE B2 20 197 -1 2 799 364 222 1 1 chr3 28100888 28100974 -131498809 + L1MA9 LINE L1 5809 5894 -289 2 799 710 213 15 0 chr3 28101029 28101165 -131498618 - B1_Mus1 SINE Alu 0 148 11 2 799 696 191 68 17 chr3 28101179 28101355 -131498428 + L1MA9 LINE L1 6128 6312 0 2 799 494 220 67 9 chr3 28101661 28101869 -131497914 - B4A SINE B4 -32 260 7 2 799 852 265 61 54 chr3 28102007 28102398 -131497385 - BGLII_B LTR ERVK -29 412 19 2 799 441 311 33 13 chr3 28102485 28102638 -131497145 + MER82 DNA MER2_type 436 591 -62 2 799 865 295 57 5 chr3 28102747 28103030 -131496753 + MTEa LTR MaLR 6 300 -79 2 799 547 262 9 0 chr3 28103987 28104094 -131495689 + B3A SINE B2 22 129 -69 2 799 719 215 51 6 chr3 28104097 28104275 -131495508 + MTE2a LTR MaLR 194 379 0 2 799 8557 216 100 19 chr3 28104311 28105449 -131494334 + Lx7 LINE L1 3482 4629 -1248 2 799 324 0 0 0 chr3 28105449 28105485 -131494298 + (CA)n Simple_repeat Simple_repeat 1 36 0 2 799 8557 217 95 20 chr3 28105485 28106787 -131492996 + Lx7 LINE L1 4630 6126 -1570 2 799 6352 189 62 65 chr3 28106791 28107882 -131491901 + Lx7 LINE L1 6233 7351 -345 2 799 291 54 0 0 chr3 28107882 28107919 -131491864 + (TA)n Simple_repeat Simple_repeat 2 38 0 2 799 6352 189 62 65 chr3 28107919 28108296 -131491487 + Lx7 LINE L1 7352 7696 0 2 799 219 69 0 0 chr3 28108992 28109021 -131490762 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2 799 266 239 60 120 chr3 28109243 28109343 -131490440 + PB1D7 SINE Alu 27 120 0 2 799 1148 88 0 0 chr3 28109390 28109537 -131490246 + B1_Mm SINE Alu 1 147 0 2 799 345 133 20 10 chr3 28109538 28109637 -131490146 + A-rich Low_complexity Low_complexity 3 102 0 2 799 506 313 55 43 chr3 28110840 28111181 -131488602 + MTEa LTR MaLR 9 375 -4 2 799 2097 136 81 3 chr3 28111704 28112087 -131487696 - MTC LTR MaLR -8 413 1 2 799 1478 117 0 8 chr3 28112129 28112370 -131487413 + Lx LINE L1 6410 6648 -6 2 799 312 27 0 0 chr3 28112376 28112413 -131487370 + (GAAAA)n Simple_repeat Simple_repeat 2 38 0 2 799 288 301 20 27 chr3 28112617 28112764 -131487019 + CT-rich Low_complexity Low_complexity 1 146 0 2 799 1144 117 191 0 chr3 28112887 28113075 -131486708 - URR1A DNA MER1_type -1 225 2 2 799 250 329 39 46 chr3 28113244 28113397 -131486386 + MIRb SINE MIR 25 176 -92 2 799 204 40 0 0 chr3 28113397 28113422 -131486361 + (CAA)n Simple_repeat Simple_repeat 2 26 0 2 799 1026 310 71 5 chr3 28114363 28114800 -131484983 - L1MB7 LINE L1 -68 6116 5651 2 799 1166 246 77 41 chr3 28114809 28115174 -131484609 + MTEb LTR MaLR 1 378 -1 2 799 1759 307 117 64 chr3 28115181 28116096 -131483687 + MTEb-int LTR MaLR 7 979 -601 2 799 1065 217 249 7 chr3 28116096 28116397 -131483386 + ORR1D1 LTR MaLR 1 374 0 2 799 1759 307 117 64 chr3 28116397 28116466 -131483317 + MTEb-int LTR MaLR 980 1043 -537 2 799 254 329 23 12 chr3 28116978 28117064 -131482719 + MTE-int LTR MaLR 897 983 -597 2 799 914 258 62 53 chr3 28117298 28117618 -131482165 - MTE2a LTR MaLR 0 379 57 2 799 575 172 8 0 chr3 28117623 28117757 -131482026 + GA-rich Low_complexity Low_complexity 1 135 0 2 799 633 193 22 29 chr3 28117760 28117899 -131481884 + B1_Mus2 SINE Alu 9 146 -1 2 799 279 313 91 31 chr3 28118464 28118718 -131481065 + MLT1C LTR MaLR 42 310 -157 2 799 894 272 17 99 chr3 28120746 28121159 -131478624 + MTE2a LTR MaLR 1 379 0 2 799 860 254 40 82 chr3 28121817 28122169 -131477614 + Lx8 LINE L1 7137 7473 0 2 799 330 194 55 14 chr3 28122777 28122850 -131476933 + ID4 SINE ID 8 83 0 2 799 509 299 27 21 chr3 28123141 28123329 -131476454 + MLT1H2 LTR MaLR 2 190 -299 2 799 361 269 34 51 chr3 28124519 28124695 -131475088 + L1MC4 LINE L1 7506 7678 -364 2 799 202 321 78 74 chr3 28125408 28125650 -131474133 + MIRb SINE MIR 26 268 0 2 799 1227 282 105 4 chr3 28126394 28126881 -131472902 + L1MA5A LINE L1 5386 5921 -376 2 799 387 0 0 0 chr3 28126936 28126979 -131472804 + (TG)n Simple_repeat Simple_repeat 1 43 0 2 799 539 138 18 0 chr3 28126979 28127088 -131472695 + (CAGAGA)n Simple_repeat Simple_repeat 4 114 0 2 799 407 310 54 20 chr3 28127212 28127360 -131472423 - RSINE1 SINE B4 -9 156 4 2 799 906 143 45 45 chr3 28127370 28127546 -131472237 - B2_Mm2 SINE B2 -19 176 1 2 799 376 288 42 26 chr3 28127546 28127735 -131472048 + L1MA5A LINE L1 6105 6296 -4 2 799 423 0 0 0 chr3 28128350 28128397 -131471386 + (CA)n Simple_repeat Simple_repeat 1 47 0 2 799 410 94 16 0 chr3 28128397 28128461 -131471322 + (GA)n Simple_repeat Simple_repeat 1 65 0 2 799 378 0 0 0 chr3 28129275 28129317 -131470466 + (TG)n Simple_repeat Simple_repeat 2 43 0 2 799 740 275 59 13 chr3 28129371 28129607 -131470176 + RMER5 LTR ERV1 75 321 -213 2 799 1858 205 21 45 chr3 28129613 28130032 -131469751 - MTD LTR MaLR -10 409 1 2 799 623 267 25 12 chr3 28130078 28130241 -131469542 + B3A SINE B2 1 165 -33 2 799 421 282 23 8 chr3 28130618 28130750 -131469033 + RMER5 LTR ERV1 359 492 -42 2 799 299 246 0 0 chr3 28132222 28132283 -131467500 + tRNA-Ala-GCY_ tRNA tRNA 11 71 -4 2 799 414 39 0 0 chr3 28132915 28132967 -131466816 + (CA)n Simple_repeat Simple_repeat 1 52 0 2 799 432 0 0 0 chr3 28133022 28133070 -131466713 + (TG)n Simple_repeat Simple_repeat 1 48 0 2 799 994 278 51 54 chr3 28133083 28133459 -131466324 - Lx8 LINE L1 -146 7327 6940 2 799 1286 308 87 57 chr3 28133471 28134170 -131465613 + MTE-int LTR MaLR 641 1360 -220 2 799 302 303 74 0 chr3 28134259 28134381 -131465402 + ORR1E LTR MaLR 1 131 -228 2 799 23 68 0 0 chr3 28134731 28134775 -131465008 + AT_rich Low_complexity Low_complexity 1 44 0 2 799 590 253 239 19 chr3 28135103 28135413 -131464370 + MTEb LTR MaLR 1 378 -1 2 799 345 293 2 29 chr3 28135517 28135648 -131464135 + L1MB8 LINE L1 5511 5630 -553 2 799 204 40 0 0 chr3 28135711 28135736 -131464047 + (GAA)n Simple_repeat Simple_repeat 2 26 0 2 799 297 0 0 0 chr3 28136138 28136171 -131463612 + (CA)n Simple_repeat Simple_repeat 1 33 0 2 799 480 210 94 128 chr3 28136195 28136375 -131463408 + L1MB8 LINE L1 5814 5987 -191 2 799 456 281 41 99 chr3 28137016 28137237 -131462546 + B4A SINE B4 11 218 -74 2 799 286 286 26 0 chr3 28137276 28137353 -131462430 + ID2 SINE ID 1 79 -4 2 799 1052 266 19 11 chr3 28138231 28138501 -131461282 - Lx8 LINE L1 -131 7342 7071 2 799 483 18 0 0 chr3 28138543 28138599 -131461184 + (TA)n Simple_repeat Simple_repeat 2 57 0 2 799 434 271 50 8 chr3 28138689 28138808 -131460975 - MER2 DNA MER2_type -1 344 221 2 799 383 316 76 86 chr3 28138937 28139238 -131460545 + ORR1E LTR MaLR 61 358 -1 2 799 215 252 9 0 chr3 28139991 28140102 -131459681 + (TG)n Simple_repeat Simple_repeat 1 112 0 2 799 243 212 0 0 chr3 28140156 28140236 -131459547 + (TG)n Simple_repeat Simple_repeat 2 81 0 2 799 234 184 0 20 chr3 28140295 28140345 -131459438 + (TG)n Simple_repeat Simple_repeat 2 50 0 2 799 597 284 60 23 chr3 28140367 28140583 -131459200 - B4A SINE B4 -5 287 64 2 799 269 133 33 0 chr3 28140583 28140643 -131459140 + CT-rich Low_complexity Low_complexity 4 65 0 2 799 220 189 37 19 chr3 28140689 28140743 -131459040 - B4A SINE B4 -223 69 15 2 799 682 262 46 17 chr3 28140887 28141062 -131458721 - B3A SINE B2 -16 182 3 2 799 216 97 0 0 chr3 28141152 28141183 -131458600 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 2 799 243 297 66 47 chr3 28141977 28142083 -131457700 + RSINE1 SINE B4 25 132 -33 2 799 261 0 0 0 chr3 28142108 28142137 -131457646 + (CA)n Simple_repeat Simple_repeat 2 30 0 2 799 21 0 0 0 chr3 28142145 28142166 -131457617 + AT_rich Low_complexity Low_complexity 1 21 0 2 799 298 278 10 30 chr3 28142221 28142321 -131457462 + CT-rich Low_complexity Low_complexity 2 99 0 2 799 569 83 12 0 chr3 28142323 28142407 -131457376 + (TCTA)n Simple_repeat Simple_repeat 3 87 0 2 799 274 294 59 0 chr3 28142426 28142511 -131457272 - PB1D10 SINE Alu -17 100 11 2 799 1301 159 241 3 chr3 28142629 28142919 -131456864 - ORR1B2 LTR MaLR -8 359 1 2 799 859 200 35 10 chr3 28143428 28143621 -131456162 - MTEa LTR MaLR -1 378 180 2 799 825 71 0 0 chr3 28143621 28143734 -131456049 + (TC)n Simple_repeat Simple_repeat 1 113 0 3 799 384 171 0 28 chr3 28143758 28143830 -131455953 - MTEa LTR MaLR -289 90 21 2 799 418 234 71 60 chr3 28143966 28144148 -131455635 - L1MD3 LINE L1 -458 7537 7354 3 799 257 271 80 94 chr3 28144145 28144369 -131455414 + L1MC5 LINE L1 7697 7917 -44 3 799 221 0 0 33 chr3 28144799 28144829 -131454954 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 3 799 651 301 82 36 chr3 28145193 28145524 -131454259 - MLT1A0 LTR MaLR -13 352 7 3 799 649 311 88 29 chr3 28145864 28145886 -131453897 - B4A SINE B4 -2 290 269 3 799 342 0 0 0 chr3 28145886 28145924 -131453859 + (TG)n Simple_repeat Simple_repeat 1 38 0 3 799 649 311 88 29 chr3 28145924 28146173 -131453610 - B4A SINE B4 -24 268 3 3 799 625 263 62 26 chr3 28146233 28146428 -131453355 - ID_B1 SINE B4 -21 203 2 3 799 190 115 82 0 chr3 28148160 28148221 -131451562 + (TCTA)n Simple_repeat Simple_repeat 4 69 0 3 799 594 99 0 0 chr3 28148935 28149026 -131450757 + (TG)n Simple_repeat Simple_repeat 2 92 0 3 799 595 274 160 34 chr3 28149026 28149264 -131450519 - B4A SINE B4 -23 269 2 3 799 890 348 42 10 chr3 28149312 28149695 -131450088 - Lx8 LINE L1 -561 6912 6518 3 799 510 348 43 28 chr3 28149805 28150044 -131449739 + Lx8 LINE L1 6990 7231 -242 3 799 270 0 0 0 chr3 28150044 28150074 -131449709 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 3 799 510 348 43 28 chr3 28150074 28150159 -131449624 + Lx8 LINE L1 7232 7318 -155 3 799 327 367 139 18 chr3 28150508 28150788 -131448995 + MLT1G1 LTR MaLR 88 401 -178 3 799 678 297 136 25 chr3 28150874 28151154 -131448629 + MTEa LTR MaLR 7 317 -62 3 799 649 268 56 23 chr3 28151660 28151874 -131447909 - MTEa LTR MaLR -4 375 155 3 799 352 334 124 25 chr3 28151875 28152231 -131447552 - MLT1D LTR MaLR -83 422 32 3 799 613 264 14 7 chr3 28152618 28152759 -131447024 + RSINE1 SINE B4 4 145 -20 3 799 321 89 0 0 chr3 28152771 28152816 -131446967 + (CA)n Simple_repeat Simple_repeat 1 45 0 3 799 189 74 0 0 chr3 28153019 28153046 -131446737 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 3 799 485 306 79 16 chr3 28153127 28153379 -131446404 - MLT1F LTR MaLR -2 546 279 3 799 241 366 45 40 chr3 28153399 28153601 -131446182 + MER20 DNA MER1_type 17 219 0 3 799 896 236 0 20 chr3 28153823 28154018 -131445765 - B3 SINE B2 -1 215 25 3 799 682 288 59 79 chr3 28154370 28154484 -131445299 - MTE2a LTR MaLR 0 379 268 3 799 3288 83 36 8 chr3 28154484 28154956 -131444827 + Lx3_Mus LINE L1 6519 7003 -6 3 799 682 288 59 79 chr3 28154956 28155131 -131444652 - MTE2a LTR MaLR -112 267 96 3 799 477 62 0 0 chr3 28155215 28155280 -131444503 + (TC)n Simple_repeat Simple_repeat 2 66 0 3 799 333 0 0 0 chr3 28155280 28155317 -131444466 + (CA)n Simple_repeat Simple_repeat 1 37 0 3 799 716 247 194 42 chr3 28155449 28155797 -131443986 + MTD LTR MaLR 5 405 -14 3 799 3160 133 40 0 chr3 28156091 28156571 -131443212 + Lx4A LINE L1 6560 7058 0 3 799 225 270 0 45 chr3 28156810 28156876 -131442907 + MIRc SINE MIR 40 102 -166 3 799 24 0 0 0 chr3 28156941 28156965 -131442818 + AT_rich Low_complexity Low_complexity 1 24 0 3 799 412 275 109 16 chr3 28156976 28157168 -131442615 - MLT1A1 LTR MaLR -2 406 197 3 799 1094 262 17 44 chr3 28157422 28157717 -131442066 - B4A SINE B4 0 292 6 3 799 2285 146 29 13 chr3 28159389 28159763 -131440020 - RLTR14 LTR ERV1 0 382 3 3 799 1001 113 6 0 chr3 28160366 28160525 -131439258 + (GAA)n Simple_repeat Simple_repeat 2 161 0 3 799 256 325 7 113 chr3 28160793 28160935 -131438848 + ID_B1 SINE B4 90 216 -8 3 799 450 0 0 0 chr3 28162859 28162909 -131436874 + (TG)n Simple_repeat Simple_repeat 2 51 0 3 799 636 77 0 0 chr3 28163327 28163418 -131436365 + (TG)n Simple_repeat Simple_repeat 2 92 0 3 799 186 43 0 0 chr3 28165265 28165288 -131434495 + (TGG)n Simple_repeat Simple_repeat 3 25 0 3 799 257 0 0 29 chr3 28165288 28165316 -131434467 + (TTTTTG)n Simple_repeat Simple_repeat 1 28 0 3 799 295 271 63 46 chr3 28165425 28165599 -131434184 - MIR3 SINE MIR -11 197 21 3 799 292 289 0 0 chr3 28166547 28166623 -131433160 - B4A SINE B4 0 292 217 3 799 854 210 5 22 chr3 28166630 28166815 -131432968 - B3 SINE B2 0 216 35 3 799 684 288 46 19 chr3 28166816 28167032 -131432751 - B4A SINE B4 -59 233 12 3 799 195 217 0 0 chr3 28167216 28167276 -131432507 + (TGAA)n Simple_repeat Simple_repeat 1 60 0 3 799 462 79 0 0 chr3 28167546 28167609 -131432174 + (TG)n Simple_repeat Simple_repeat 2 64 0 3 799 484 250 44 22 chr3 28167617 28167752 -131432031 - B1F1 SINE Alu 0 149 12 3 799 232 259 0 0 chr3 28167709 28167763 -131432020 - B4A SINE B4 -153 139 86 3 799 249 83 0 0 chr3 28168656 28168692 -131431091 + (CA)n Simple_repeat Simple_repeat 2 37 0 3 799 185 35 0 65 chr3 28169144 28169175 -131430608 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 3 799 237 33 0 0 chr3 28170222 28170252 -131429531 + (TG)n Simple_repeat Simple_repeat 2 31 0 3 799 204 250 0 0 chr3 28170252 28170296 -131429487 + (CATA)n Simple_repeat Simple_repeat 3 46 0 3 799 1324 206 119 48 chr3 28170432 28170810 -131428973 + MTD LTR MaLR 1 405 -14 3 799 450 305 63 5 chr3 28170868 28171059 -131428724 - MLT1F LTR MaLR -346 202 1 3 799 245 359 21 21 chr3 28172001 28172095 -131427688 + BC1_Mm scRNA scRNA 1 94 -58 3 799 224 326 53 32 chr3 28172496 28172591 -131427192 + B1F1 SINE Alu 14 110 -39 3 799 192 77 0 0 chr3 28172682 28172708 -131427075 + (CAAG)n Simple_repeat Simple_repeat 2 27 0 3 799 358 111 0 0 chr3 28172778 28172832 -131426951 + ORR1B2 LTR MaLR 5 58 -309 3 799 191 114 29 0 chr3 28172832 28172867 -131426916 + (TC)n Simple_repeat Simple_repeat 1 36 0 3 799 869 215 35 15 chr3 28172873 28173071 -131426712 + ORR1B2 LTR MaLR 157 358 -9 3 799 363 222 64 9 chr3 28173126 28173235 -131426548 + L1MB8 LINE L1 5569 5683 -491 3 799 833 248 178 44 chr3 28173324 28173662 -131426121 + MTD LTR MaLR 1 383 -36 3 799 336 247 0 0 chr3 28173744 28173825 -131425958 + L1MB8 LINE L1 5899 5979 -199 3 799 237 217 138 24 chr3 28174003 28174126 -131425657 - L1MC5 LINE L1 -114 7847 7711 3 799 1902 270 71 27 chr3 28174353 28174901 -131424882 - Lx5 LINE L1 -19 7031 6460 3 799 3109 159 183 75 chr3 28174912 28175715 -131424068 - RMER19B LTR ERVK -12 890 1 3 799 3109 254 43 24 chr3 28175715 28176124 -131423659 - Lx5 LINE L1 -679 6781 6157 3 799 4393 121 74 20 chr3 28176124 28176559 -131423224 + RMER17D2 LTR ERVK 1 466 -343 3 799 294 50 0 0 chr3 28176559 28176599 -131423184 + (TCTG)n Simple_repeat Simple_repeat 2 41 0 3 799 4393 121 74 20 chr3 28176599 28176930 -131422853 + RMER17D2 LTR ERVK 467 809 0 3 799 13278 183 89 14 chr3 28176930 28178160 -131421623 - Lx5 LINE L1 -894 6156 4846 3 799 360 0 0 0 chr3 28178160 28178200 -131421583 + (TTCC)n Simple_repeat Simple_repeat 1 40 0 3 799 1242 100 0 0 chr3 28178200 28178380 -131421403 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 3 799 13278 168 97 13 chr3 28178380 28180096 -131419687 - Lx5 LINE L1 -1032 4845 2943 3 799 1163 90 6 6 chr3 28180213 28180391 -131419392 + L1_Mus3 LINE L1 6461 6638 0 3 99 468 146 0 0 chr3 28180441 28180544 -131419239 + (CAGAGA)n Simple_repeat Simple_repeat 6 108 0 3 800 318 106 0 0 chr3 28181619 28181666 -131418117 + (TA)n Simple_repeat Simple_repeat 2 48 0 3 800 719 305 73 18 chr3 28181670 28181944 -131417839 - B4A SINE B4 -1 291 3 3 800 729 192 15 0 chr3 28182098 28182228 -131417555 + RSINE1 SINE B4 3 134 -31 3 800 615 92 0 0 chr3 28182250 28182337 -131417446 + (CA)n Simple_repeat Simple_repeat 2 88 0 3 800 885 266 51 93 chr3 28182396 28182612 -131417171 + MTE2a LTR MaLR 1 200 -179 3 800 384 97 0 0 chr3 28182612 28182674 -131417109 + (CACG)n Simple_repeat Simple_repeat 1 62 0 3 800 885 266 51 93 chr3 28182674 28182813 -131416970 + MTE2a LTR MaLR 201 341 -38 3 800 386 241 13 0 chr3 28182841 28182920 -131416863 - ID4_ SINE ID -2 81 2 3 800 26 0 0 0 chr3 28182994 28183020 -131416763 + AT_rich Low_complexity Low_complexity 1 26 0 3 800 676 247 120 5 chr3 28183735 28183926 -131415857 + ID_B1 SINE B4 1 213 -11 3 800 2150 137 22 0 chr3 28184361 28184683 -131415100 - ORR1A4 LTR MaLR 0 329 1 3 800 273 259 120 43 chr3 28184686 28184803 -131414980 - RMER30 DNA MER1_type -47 155 30 3 800 2267 154 74 0 chr3 28185390 28185780 -131414003 + MTC LTR MaLR 1 419 -2 3 800 26 0 0 0 chr3 28186394 28186420 -131413363 + AT_rich Low_complexity Low_complexity 1 26 0 3 800 339 367 61 23 chr3 28186438 28186831 -131412952 + L1MB7 LINE L1 5591 5998 -186 3 800 311 113 19 0 chr3 28187067 28187120 -131412663 + (TG)n Simple_repeat Simple_repeat 1 54 0 3 800 378 0 0 0 chr3 28187120 28187161 -131412622 + (GA)n Simple_repeat Simple_repeat 1 42 0 3 800 366 165 9 19 chr3 28187162 28187267 -131412516 + (TG)n Simple_repeat Simple_repeat 1 104 0 3 800 262 289 12 0 chr3 28187498 28187581 -131412202 + (TG)n Simple_repeat Simple_repeat 1 84 0 3 800 473 309 0 0 chr3 28187846 28187969 -131411814 - B4 SINE B4 -86 206 84 3 800 252 0 0 0 chr3 28187972 28188000 -131411783 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 3 800 904 263 56 116 chr3 28188703 28188989 -131410794 + MTE2a LTR MaLR 8 261 -118 3 800 357 24 0 0 chr3 28188989 28189031 -131410752 + (CA)n Simple_repeat Simple_repeat 2 43 0 3 800 904 263 56 116 chr3 28189031 28189140 -131410643 + MTE2a LTR MaLR 262 378 -1 3 800 1172 48 0 13 chr3 28190820 28190969 -131408814 - B1_Mus2 SINE Alu 0 147 1 3 800 294 95 0 0 chr3 28192453 28192495 -131407288 + (GA)n Simple_repeat Simple_repeat 2 43 0 3 800 884 153 213 0 chr3 28193167 28193350 -131406433 + URR1A DNA MER1_type 5 226 0 3 800 261 75 0 0 chr3 28193396 28193436 -131406347 + (T)n Simple_repeat Simple_repeat 1 40 0 3 800 22 0 0 0 chr3 28193574 28193596 -131406187 + AT_rich Low_complexity Low_complexity 1 22 0 3 800 252 0 0 0 chr3 28193694 28193722 -131406061 + (TG)n Simple_repeat Simple_repeat 1 28 0 3 800 310 326 36 7 chr3 28193732 28193871 -131405912 - Lx9 LINE L1 -183 7461 7319 3 800 687 153 53 0 chr3 28193904 28194035 -131405748 - B1_Mus2 SINE Alu -1 146 9 4 800 328 298 51 38 chr3 28194035 28194060 -131405723 - B4A SINE B4 -66 225 68 4 800 890 267 70 48 chr3 28194064 28194395 -131405388 - Lx9 LINE L1 -348 7296 6959 3 800 319 238 25 0 chr3 28194548 28194628 -131405155 - RSINE1 SINE B4 -2 163 82 4 800 1516 197 148 3 chr3 28194839 28195205 -131404578 - MTD LTR MaLR 0 419 1 4 800 363 286 71 0 chr3 28196444 28196556 -131403227 + ID_B1 SINE B4 84 203 -21 4 800 2293 70 106 42 chr3 28196627 28196987 -131402796 + L1Md_F2 LINE L1 6195 6577 -5 4 800 201 219 0 30 chr3 28197093 28197159 -131402624 + T-rich Low_complexity Low_complexity 4 67 0 4 800 381 22 0 0 chr3 28197746 28197792 -131401991 + (TA)n Simple_repeat Simple_repeat 1 46 0 4 800 248 250 0 0 chr3 28198397 28198457 -131401326 - RSINE1 SINE B4 -41 124 65 4 800 363 269 174 6 chr3 28199228 28199389 -131400394 - MER5A DNA MER1_type -1 188 1 4 800 260 145 0 208 chr3 28199717 28199813 -131399970 - L1M2 LINE L1 -678 5634 5559 4 800 378 0 0 0 chr3 28199856 28199898 -131399885 + (TG)n Simple_repeat Simple_repeat 1 42 0 4 800 306 0 0 0 chr3 28199898 28199932 -131399851 + (TGG)n Simple_repeat Simple_repeat 3 36 0 4 800 248 325 141 56 chr3 28200606 28200961 -131398822 + L2a LINE L2 2488 2872 -547 4 800 209 342 14 14 chr3 28201286 28201360 -131398423 + L2a LINE L2 3309 3382 -44 4 800 426 322 63 32 chr3 28201564 28201753 -131398030 - B3A SINE B2 -1 197 3 4 800 29 28 0 0 chr3 28202819 28202855 -131396928 + AT_rich Low_complexity Low_complexity 1 36 0 4 800 378 0 0 0 chr3 28203333 28203375 -131396408 + (CA)n Simple_repeat Simple_repeat 2 43 0 4 800 232 277 138 0 chr3 28203379 28203444 -131396339 - RSINE1 SINE B4 -43 122 49 4 800 372 176 58 19 chr3 28203554 28203710 -131396073 + (TA)n Simple_repeat Simple_repeat 2 163 0 4 800 221 125 77 33 chr3 28203738 28203829 -131395954 + (TA)n Simple_repeat Simple_repeat 2 96 0 4 800 1318 237 90 21 chr3 28204827 28205206 -131394577 + MTD LTR MaLR 1 405 -14 4 800 341 333 139 0 chr3 28205990 28206134 -131393649 - RSINE1 SINE B4 0 165 2 4 800 229 325 65 41 chr3 28206812 28206982 -131392801 + MLT1A0 LTR MaLR 126 299 -66 4 800 828 288 42 48 chr3 28207014 28207368 -131392415 - L1MB7 LINE L1 -208 5976 5625 4 800 210 143 0 0 chr3 28207412 28207447 -131392336 + (TCC)n Simple_repeat Simple_repeat 2 36 0 4 800 191 205 11 46 chr3 28209369 28209456 -131390327 + T-rich Low_complexity Low_complexity 1 84 0 4 800 362 274 85 0 chr3 28209463 28209569 -131390214 - ID_B1 SINE B4 -21 203 89 4 800 378 0 0 0 chr3 28209818 28209860 -131389923 + (TTCC)n Simple_repeat Simple_repeat 1 42 0 4 800 387 311 24 8 chr3 28209989 28210112 -131389671 - RSINE1 SINE B4 -38 127 3 4 800 572 259 32 8 chr3 28211440 28211607 -131388176 - MTEb LTR MaLR -23 356 163 4 800 270 172 34 22 chr3 28211628 28211717 -131388066 + GA-rich Low_complexity Low_complexity 4 93 0 4 800 552 121 0 0 chr3 28211709 28211800 -131387983 + (GGA)n Simple_repeat Simple_repeat 1 91 0 4 800 788 208 6 6 chr3 28211807 28211986 -131387797 - MTEb LTR MaLR -200 179 1 4 800 198 0 0 0 chr3 28212205 28212227 -131387556 + (T)n Simple_repeat Simple_repeat 1 22 0 4 800 570 305 26 2 chr3 28212387 28212570 -131387213 + B4A SINE B4 86 271 -21 4 800 668 162 0 0 chr3 28213136 28213247 -131386536 - B3 SINE B2 -104 112 2 4 800 566 287 90 42 chr3 28213455 28213644 -131386139 - B3A SINE B2 0 198 1 4 800 21 36 0 0 chr3 28213654 28213682 -131386101 + AT_rich Low_complexity Low_complexity 1 28 0 4 800 650 23 12 0 chr3 28213682 28213768 -131386015 + B1_Mus2 SINE Alu 61 147 0 4 800 1610 231 15 68 chr3 28215124 28215583 -131384200 - RMER10A LTR ERVL -7 435 1 4 800 180 0 0 0 chr3 28216688 28216708 -131383075 + (TTCA)n Simple_repeat Simple_repeat 2 21 0 4 800 527 294 95 56 chr3 28217663 28217894 -131381889 - B4 SINE B4 -52 240 1 4 800 1769 118 70 15 chr3 28218444 28218772 -131381011 - ORR1B1 LTR MaLR -8 386 41 4 800 615 222 7 36 chr3 28218826 28218966 -131380817 - B1F2 SINE Alu -2 147 12 4 800 321 312 47 54 chr3 28219510 28219716 -131380067 + MIRc SINE MIR 17 211 -57 4 800 227 267 9 62 chr3 28220027 28220139 -131379644 - HAL1 LINE L1 -2063 444 339 4 800 266 314 94 19 chr3 28220856 28221015 -131378768 - HAL1 LINE L1 -701 1806 1636 4 800 772 180 11 11 chr3 28221658 28221838 -131377945 + (TATG)n Simple_repeat Simple_repeat 1 180 0 4 800 521 242 6 0 chr3 28221826 28221991 -131377792 + (TG)n Simple_repeat Simple_repeat 1 166 0 4 800 378 0 0 0 chr3 28222868 28222910 -131376873 + (TG)n Simple_repeat Simple_repeat 2 43 0 4 800 268 336 122 67 chr3 28222910 28223165 -131376618 - B4 SINE B4 -23 269 1 4 800 27 29 0 0 chr3 28223755 28223789 -131375994 + AT_rich Low_complexity Low_complexity 1 34 0 4 800 277 325 86 0 chr3 28223800 28223917 -131375866 + PB1 SINE Alu 1 127 0 4 800 215 273 18 0 chr3 28223948 28224003 -131375780 + ID4 SINE ID 3 58 -25 4 800 578 225 23 29 chr3 28224755 28224929 -131374854 - L1M5 LINE L1 -302 5822 5650 4 800 297 0 0 0 chr3 28225012 28225045 -131374738 + (GA)n Simple_repeat Simple_repeat 2 34 0 4 800 462 187 0 0 chr3 28225158 28225249 -131374534 + (TG)n Simple_repeat Simple_repeat 1 91 0 4 800 2249 230 68 15 chr3 28225261 28225939 -131373844 - RCHARR1 DNA MER1_type -66 908 195 4 800 609 212 9 0 chr3 28225939 28226052 -131373731 + RSINE1 SINE B4 2 115 -50 4 800 231 234 62 15 chr3 28226087 28226152 -131373631 - RCHARR1 DNA MER1_type -818 156 89 4 800 210 71 0 0 chr3 28226153 28226181 -131373602 + (A)n Simple_repeat Simple_repeat 1 28 0 4 800 232 114 0 0 chr3 28226203 28226238 -131373545 - RCHARR1 DNA MER1_type -937 37 3 4 800 723 283 57 116 chr3 28226399 28226787 -131372996 - MTE2a LTR MaLR -9 370 6 4 800 29 47 0 0 chr3 28227852 28227895 -131371888 + AT_rich Low_complexity Low_complexity 1 43 0 4 800 1011 258 99 57 chr3 28229225 28229283 -131370500 + L1MB8 LINE L1 5651 5703 -475 4 800 198 0 0 0 chr3 28229283 28229305 -131370478 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 4 800 1105 67 0 0 chr3 28229305 28229440 -131370343 - B1_Mus2 SINE Alu -11 136 2 4 800 1011 258 99 57 chr3 28229440 28229774 -131370009 + L1MB8 LINE L1 5704 6042 -136 4 800 180 0 0 0 chr3 28229774 28229794 -131369989 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 4 800 1011 258 99 57 chr3 28229794 28229905 -131369878 + L1MB8 LINE L1 6043 6175 -3 4 800 501 17 0 0 chr3 28231201 28231259 -131368524 + (TG)n Simple_repeat Simple_repeat 2 59 0 4 800 994 105 115 66 chr3 28231778 28231961 -131367822 - B2_Mm2 SINE B2 -3 192 1 4 800 609 237 268 93 chr3 28232009 28232330 -131367453 + MTE2a LTR MaLR 3 379 0 4 800 811 310 88 14 chr3 28233359 28233784 -131365999 - MER34A LTR ERV1 -125 462 6 4 800 369 0 0 0 chr3 28233832 28233873 -131365910 + (CA)n Simple_repeat Simple_repeat 1 41 0 4 800 1074 240 75 82 chr3 28235189 28235579 -131364204 - MTE2b LTR MaLR 0 370 1 4 800 269 61 0 0 chr3 28236191 28236224 -131363559 + (TG)n Simple_repeat Simple_repeat 2 34 0 4 800 566 236 0 6 chr3 28236229 28236395 -131363388 + (TATG)n Simple_repeat Simple_repeat 4 168 0 4 800 363 287 99 23 chr3 28236416 28236587 -131363196 - B4A SINE B4 0 292 109 4 800 546 119 0 0 chr3 28238355 28238439 -131361344 + (CA)n Simple_repeat Simple_repeat 1 84 0 4 800 333 0 0 0 chr3 28238439 28238475 -131361308 + (GA)n Simple_repeat Simple_repeat 2 38 0 4 800 456 62 0 0 chr3 28238545 28238609 -131361174 + (CA)n Simple_repeat Simple_repeat 1 64 0 4 800 312 200 0 0 chr3 28238646 28238726 -131361057 + (CA)n Simple_repeat Simple_repeat 1 80 0 4 800 252 272 0 58 chr3 28238788 28238874 -131360909 - ID2 SINE ID -1 82 2 4 800 453 116 0 0 chr3 28239616 28239685 -131360098 + (TG)n Simple_repeat Simple_repeat 1 69 0 4 800 795 274 62 23 chr3 28239694 28239952 -131359831 - B4A SINE B4 -23 269 2 4 800 28 71 0 0 chr3 28240536 28240592 -131359191 + AT_rich Low_complexity Low_complexity 1 56 0 4 800 1173 245 38 16 chr3 28241036 28241351 -131358432 - MTD LTR MaLR -88 331 10 4 800 1113 288 84 18 chr3 28241662 28242055 -131357728 + MTD LTR MaLR 1 419 0 4 800 201 74 0 0 chr3 28242604 28242631 -131357152 + (T)n Simple_repeat Simple_repeat 1 27 0 4 800 252 253 103 0 chr3 28243063 28243150 -131356633 - MLT1I LTR MaLR -232 179 84 4 800 570 275 19 82 chr3 28243161 28243367 -131356416 + B3A SINE B2 1 193 -5 4 800 357 330 71 59 chr3 28243580 28243818 -131355965 - MLT1J LTR MaLR -33 479 239 4 800 517 253 119 8 chr3 28243907 28244110 -131355673 + MTE2b LTR MaLR 21 234 -145 4 800 427 301 113 27 chr3 28244049 28244118 -131355665 - B4A SINE B4 -129 163 85 4 800 186 43 0 0 chr3 28244118 28244141 -131355642 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 4 800 427 301 113 27 chr3 28244141 28244221 -131355562 - B4A SINE B4 -208 84 1 4 800 276 341 79 8 chr3 28245672 28245799 -131353984 + B3 SINE B2 81 216 0 4 800 23 33 0 0 chr3 28246104 28246134 -131353649 + AT_rich Low_complexity Low_complexity 1 30 0 4 800 304 288 85 41 chr3 28246694 28246826 -131352957 - MIR SINE MIR -135 141 3 4 800 374 262 13 7 chr3 28247370 28247503 -131352280 - RLTR19-int LTR ERVK -2429 3708 3621 4 800 197 298 18 0 chr3 28248038 28248095 -131351688 - MIRc SINE MIR -84 184 127 4 800 423 0 0 0 chr3 28248254 28248301 -131351482 + (CA)n Simple_repeat Simple_repeat 2 48 0 4 800 210 258 32 0 chr3 28248302 28248364 -131351419 - ID4 SINE ID -13 70 7 4 800 1215 102 0 0 chr3 28248423 28248600 -131351183 + (TTTC)n Simple_repeat Simple_repeat 1 177 0 4 800 279 79 0 0 chr3 28248601 28248639 -131351144 + (TTCC)n Simple_repeat Simple_repeat 4 41 0 4 800 1180 105 72 0 chr3 28248648 28248829 -131350954 - B2_Mm2 SINE B2 -1 194 1 4 800 291 193 65 43 chr3 28250422 28250514 -131349269 - MIRb SINE MIR -78 190 97 4 800 180 0 0 0 chr3 28250516 28250536 -131349247 + (GA)n Simple_repeat Simple_repeat 2 21 0 5 800 733 262 68 0 chr3 28250748 28250954 -131348829 + ID_B1 SINE B4 5 224 0 5 800 229 301 107 27 chr3 28250984 28251059 -131348724 + ID4 SINE ID 3 83 0 5 800 257 229 71 24 chr3 28251087 28251172 -131348611 + MIR SINE MIR 174 262 0 5 800 22 0 0 0 chr3 28251768 28251790 -131347993 + AT_rich Low_complexity Low_complexity 1 22 0 5 800 358 131 11 77 chr3 28253966 28254080 -131345703 + B1_Mm SINE Alu 14 147 0 5 800 347 262 74 93 chr3 28254095 28254352 -131345431 - RMER15 LTR ERVL -9 566 315 5 800 524 327 28 24 chr3 28254599 28254812 -131344971 - B4A SINE B4 -75 217 4 5 800 468 279 121 101 chr3 28255047 28255453 -131344330 + RMER10A LTR ERVL 12 425 -17 5 800 527 286 73 6 chr3 28255454 28255619 -131344164 + ID_B1 SINE B4 31 206 -18 5 800 23 0 0 0 chr3 28256111 28256134 -131343649 + AT_rich Low_complexity Low_complexity 1 23 0 5 800 207 0 0 0 chr3 28256153 28256176 -131343607 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 5 800 232 263 37 62 chr3 28256183 28256264 -131343519 - RSINE1 SINE B4 0 165 87 5 800 1392 208 136 6 chr3 28256770 28257123 -131342660 - MTD LTR MaLR -20 399 1 5 800 333 240 9 80 chr3 28257374 28257487 -131342296 - B4A SINE B4 0 292 188 5 800 324 308 9 0 chr3 28257500 28257607 -131342176 - B4 SINE B4 -152 140 33 5 800 1236 252 12 31 chr3 28259425 28259748 -131340035 + MTEa LTR MaLR 20 336 -43 5 800 23 33 0 0 chr3 28260498 28260528 -131339255 + AT_rich Low_complexity Low_complexity 1 30 0 5 800 908 181 155 27 chr3 28261052 28261239 -131338544 + B3 SINE B2 1 211 -5 5 800 482 256 254 45 chr3 28261677 28261964 -131337819 - ORR1D2 LTR MaLR 0 370 24 5 800 326 183 11 109 chr3 28262244 28262336 -131337447 + MTE2b LTR MaLR 10 92 -287 5 800 528 145 250 25 chr3 28262376 28262496 -131337287 - B1_Mus1 SINE Alu 0 148 2 5 800 914 234 72 26 chr3 28262517 28262781 -131337002 + MTE2b LTR MaLR 100 375 -4 5 800 182 272 125 10 chr3 28262881 28262985 -131336798 - L3 LINE CR1 -124 4365 4250 5 800 879 213 91 10 chr3 28263207 28263406 -131336377 - B3 SINE B2 -1 215 1 5 800 419 283 30 30 chr3 28264230 28264394 -131335389 + Lx8 LINE L1 6905 7068 -405 5 800 234 281 16 0 chr3 28264401 28264465 -131335318 + G-rich Low_complexity Low_complexity 3 67 0 5 800 267 103 0 0 chr3 28264478 28264517 -131335266 + (CAAT)n Simple_repeat Simple_repeat 2 40 0 5 800 1166 229 45 31 chr3 28264525 28264881 -131334902 + ORR1D2 LTR MaLR 6 366 -4 5 800 21 36 0 0 chr3 28265320 28265348 -131334435 + AT_rich Low_complexity Low_complexity 1 28 0 5 800 693 153 0 0 chr3 28265382 28265506 -131334277 + (TG)n Simple_repeat Simple_repeat 2 125 0 5 800 192 196 107 0 chr3 28266239 28266295 -131333488 + MIR SINE MIR 65 126 -136 5 800 408 284 196 4 chr3 28266339 28266569 -131333214 + Tigger5 DNA MER2_type 2133 2406 0 5 800 243 309 12 36 chr3 28266800 28266884 -131332899 - ID4 SINE ID 0 83 2 5 800 3207 190 66 79 chr3 28267466 28268418 -131331365 - RMER19B LTR ERVK -12 890 1 5 800 312 48 0 0 chr3 28269307 28269349 -131330434 + (TTA)n Simple_repeat Simple_repeat 1 42 0 5 800 586 299 34 11 chr3 28269364 28269540 -131330243 - B3A SINE B2 -16 182 3 5 800 282 148 0 0 chr3 28269582 28269636 -131330147 + (TG)n Simple_repeat Simple_repeat 1 54 0 5 800 560 280 130 45 chr3 28269644 28269913 -131329870 - B4A SINE B4 0 292 1 5 800 439 234 0 11 chr3 28270245 28270340 -131329443 - ID_B1 SINE B4 -53 171 78 5 800 181 259 153 0 chr3 28270832 28270917 -131328866 + L2c LINE L2 3270 3367 -20 5 800 322 237 131 0 chr3 28271570 28271669 -131328114 + PB1D7 SINE Alu 8 118 -2 5 800 5139 48 4 103 chr3 28272966 28273724 -131326059 - L1Md_F2 LINE L1 -1 6581 5899 5 800 243 0 0 0 chr3 28273872 28273899 -131325884 + (CA)n Simple_repeat Simple_repeat 2 28 0 5 800 230 235 32 105 chr3 28274645 28274740 -131325043 + RMER12 LTR ERVK 750 837 -485 5 800 237 65 0 0 chr3 28274768 28274799 -131324984 + (TTCA)n Simple_repeat Simple_repeat 3 33 0 5 800 1172 88 0 0 chr3 28274984 28275132 -131324651 + B1_Mus1 SINE Alu 1 148 0 5 800 318 173 0 0 chr3 28275134 28275209 -131324574 + A-rich Low_complexity Low_complexity 1 75 0 5 800 543 302 0 75 chr3 28275209 28275395 -131324388 + B3A SINE B2 27 198 0 5 800 271 224 13 38 chr3 28275498 28275577 -131324206 + PB1D10 SINE Alu 41 117 0 5 800 221 28 83 0 chr3 28276329 28276365 -131323418 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 5 800 420 232 72 0 chr3 28278698 28278823 -131320960 + MLT1A1 LTR MaLR 275 408 0 5 800 207 0 0 0 chr3 28279690 28279713 -131320070 + (TTTTTA)n Simple_repeat Simple_repeat 2 24 0 5 800 501 292 8 0 chr3 28280755 28280875 -131318908 + B3A SINE B2 61 181 -17 5 800 211 318 47 0 chr3 28281833 28281918 -131317865 + L2a LINE L2 3297 3385 -41 5 800 234 320 56 24 chr3 28282184 28282309 -131317474 + L2a LINE L2 3040 3168 -258 5 800 180 0 0 0 chr3 28282409 28282429 -131317354 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 5 800 279 309 12 0 chr3 28283965 28284046 -131315737 - ID4_ SINE ID 0 83 2 5 800 246 140 140 0 chr3 28284568 28284618 -131315165 + U2 snRNA snRNA 1 57 -131 5 800 650 306 157 2 chr3 28284753 28285225 -131314558 - L1MC3 LINE L1 -318 7467 6923 5 800 2215 30 11 4 chr3 28285249 28285517 -131314266 - L1Md_F3 LINE L1 0 6584 6315 5 800 385 303 23 8 chr3 28285526 28285659 -131314124 + CT-rich Low_complexity Low_complexity 2 136 0 5 800 189 132 0 0 chr3 28285670 28285708 -131314075 + (TTGG)n Simple_repeat Simple_repeat 2 39 0 5 800 240 200 55 0 chr3 28286230 28286285 -131313498 + GA-rich Low_complexity Low_complexity 3 60 0 5 800 648 233 31 78 chr3 28286489 28286680 -131313103 - B3A SINE B2 -16 182 1 5 800 339 25 0 0 chr3 28286885 28286925 -131312858 + (TG)n Simple_repeat Simple_repeat 1 40 0 5 800 495 0 0 0 chr3 28286925 28286979 -131312804 + (GA)n Simple_repeat Simple_repeat 1 55 0 5 800 983 198 43 0 chr3 28287573 28287780 -131312003 - B3 SINE B2 0 216 1 5 800 357 161 0 0 chr3 28287967 28288029 -131311754 + ORR1B2 LTR MaLR 1 62 -305 5 800 372 123 0 0 chr3 28288020 28288077 -131311706 + ORR1B2 LTR MaLR 311 367 0 5 800 664 296 0 58 chr3 28288567 28288775 -131311008 - B3A SINE B2 0 198 3 5 800 21 0 0 0 chr3 28288776 28288797 -131310986 + AT_rich Low_complexity Low_complexity 1 21 0 5 800 196 127 36 0 chr3 28288841 28288896 -131310887 + (TA)n Simple_repeat Simple_repeat 2 58 0 5 800 181 392 29 0 chr3 28289408 28289510 -131310273 - L2a LINE L2 -21 3405 3301 5 800 22 0 0 0 chr3 28291443 28291465 -131308318 + AT_rich Low_complexity Low_complexity 1 22 0 5 800 316 317 17 19 chr3 28292372 28292492 -131307291 + L1ME1 LINE L1 5465 5584 -596 5 800 425 198 29 34 chr3 28292671 28292806 -131306977 + L1ME1 LINE L1 5854 5989 -355 5 800 279 330 11 0 chr3 28292841 28292935 -131306848 + L1ME1 LINE L1 6064 6158 -21 5 800 249 366 22 29 chr3 28292973 28293111 -131306672 + B3A SINE B2 61 197 -1 5 800 878 85 8 0 chr3 28294091 28294220 -131305563 + (GA)n Simple_repeat Simple_repeat 1 130 0 5 800 513 271 0 0 chr3 28294797 28294904 -131304879 + RSINE1 SINE B4 30 136 -29 5 800 22 35 0 0 chr3 28294904 28294933 -131304850 + AT_rich Low_complexity Low_complexity 1 29 0 5 800 419 217 56 67 chr3 28295330 28295508 -131304275 + (ATGGTG)n Simple_repeat Simple_repeat 3 178 0 5 800 257 273 62 55 chr3 28295753 28295881 -131303902 - Charlie8 DNA MER1_type -2157 271 143 5 800 321 0 61 0 chr3 28295887 28295936 -131303847 + (TTTTTG)n Simple_repeat Simple_repeat 3 54 0 5 800 207 0 0 0 chr3 28296319 28296342 -131303441 + (GTTTG)n Simple_repeat Simple_repeat 2 24 0 5 800 294 321 119 0 chr3 28297023 28297157 -131302626 - RMER15-int LTR ERVL -325 4674 4525 5 800 22 94 0 0 chr3 28297266 28297330 -131302453 + AT_rich Low_complexity Low_complexity 1 64 0 5 800 22 0 0 0 chr3 28297428 28297450 -131302333 + AT_rich Low_complexity Low_complexity 1 22 0 5 800 1682 164 50 16 chr3 28297629 28297946 -131301837 - ORR1B1 LTR MaLR -7 387 60 5 800 387 155 0 23 chr3 28297943 28298029 -131301754 - ORR1B1 LTR MaLR -245 84 1 5 800 626 268 92 5 chr3 28298154 28298360 -131301423 - B4A SINE B4 -68 224 1 5 800 396 0 0 0 chr3 28299067 28299111 -131300672 + (TA)n Simple_repeat Simple_repeat 2 45 0 5 800 423 0 0 0 chr3 28299111 28299157 -131300626 + (TG)n Simple_repeat Simple_repeat 2 48 0 5 800 450 53 0 0 chr3 28300125 28300182 -131299601 + (CA)n Simple_repeat Simple_repeat 2 58 0 5 800 184 301 64 35 chr3 28300723 28300864 -131298919 - MIRb SINE MIR -68 200 56 5 800 341 250 216 5 chr3 28301825 28302010 -131297773 - MLT1A LTR MaLR -12 362 139 5 800 308 329 47 74 chr3 28302011 28302310 -131297473 + B4A SINE B4 2 292 0 5 800 291 28 0 0 chr3 28302347 28302383 -131297400 + (CA)n Simple_repeat Simple_repeat 2 37 0 5 800 1059 242 117 43 chr3 28302499 28302875 -131296908 + MTD LTR MaLR 13 416 -3 5 800 375 341 119 0 chr3 28303777 28303903 -131295880 - RSINE1 SINE B4 -1 164 24 5 800 650 267 41 140 chr3 28305376 28305768 -131294015 - ORR1E LTR MaLR -4 355 3 5 800 27 0 0 0 chr3 28306944 28306971 -131292812 + AT_rich Low_complexity Low_complexity 1 27 0 5 800 217 233 0 0 chr3 28308005 28308048 -131291735 + A-rich Low_complexity Low_complexity 4 46 0 5 800 270 81 0 0 chr3 28309128 28309165 -131290618 + (T)n Simple_repeat Simple_repeat 1 37 0 5 800 450 0 0 0 chr3 28309231 28309281 -131290502 + (TTTA)n Simple_repeat Simple_repeat 3 52 0 5 800 288 281 0 80 chr3 28310037 28310150 -131289633 - ID4_ SINE ID -43 109 6 6 800 186 167 50 0 chr3 28310282 28310342 -131289441 + (TA)n Simple_repeat Simple_repeat 1 63 0 6 800 543 201 6 13 chr3 28310364 28310520 -131289263 + (TA)n Simple_repeat Simple_repeat 2 156 0 6 800 265 336 89 18 chr3 28310522 28310634 -131289149 - ID_B1 SINE B4 -19 205 86 6 800 203 138 0 0 chr3 28310682 28310711 -131289072 + (CATG)n Simple_repeat Simple_repeat 2 30 0 6 800 468 145 270 9 chr3 28310721 28310832 -131288951 - B1_Mus1 SINE Alu 0 148 9 6 800 1163 158 19 0 chr3 28310872 28311087 -131288696 + URR1B DNA MER1_type 7 225 0 6 801 817 192 104 33 chr3 28312364 28312614 -131287169 - MTD LTR MaLR -14 405 142 6 801 264 242 30 15 chr3 28313641 28313708 -131286075 - ID4 SINE ID -13 70 3 6 801 491 322 134 15 chr3 28313912 28314240 -131285543 + MLT1C LTR MaLR 53 419 -48 6 801 267 185 77 0 chr3 28314714 28314779 -131285004 - MTEb LTR MaLR -9 370 301 6 801 324 115 0 19 chr3 28315257 28315310 -131284473 - HAL1-3A_ME LINE L1 -831 2027 1976 6 801 279 0 0 0 chr3 28315324 28315355 -131284428 + (GA)n Simple_repeat Simple_repeat 1 31 0 6 801 248 53 26 0 chr3 28315354 28315392 -131284391 + (TG)n Simple_repeat Simple_repeat 1 39 0 6 801 429 290 109 58 chr3 28315401 28315676 -131284107 - B4A SINE B4 0 292 4 6 801 500 333 94 17 chr3 28316351 28316586 -131283197 - B4A SINE B4 -35 257 5 6 801 405 0 0 0 chr3 28316945 28316990 -131282793 + (TA)n Simple_repeat Simple_repeat 1 45 0 6 801 758 144 56 82 chr3 28317013 28317209 -131282574 - Lx9 LINE L1 -7 7637 7447 6 801 488 135 133 0 chr3 28317230 28317392 -131282391 + Lx9 LINE L1 7233 7445 -199 6 801 384 222 88 11 chr3 28318681 28318772 -131281011 - PB1D10 SINE Alu -10 107 10 6 801 357 24 0 0 chr3 28318860 28318902 -131280881 + (TG)n Simple_repeat Simple_repeat 2 43 0 6 801 576 277 7 0 chr3 28318932 28319069 -131280714 - RSINE1 SINE B4 -16 149 12 6 801 486 273 92 6 chr3 28319212 28319385 -131280398 - Charlie1 DNA MER1_type -2564 217 30 6 801 182 37 37 0 chr3 28320005 28320032 -131279751 + (TC)n Simple_repeat Simple_repeat 2 29 0 6 801 667 258 68 15 chr3 28320054 28320259 -131279524 - B3 SINE B2 0 216 1 6 801 3377 50 0 0 chr3 28322337 28322733 -131277050 + MTA_Mm LTR MaLR 1 396 0 6 801 2260 169 10 19 chr3 28323187 28323598 -131276185 + MTB_Mm LTR MaLR 1 407 0 6 801 370 255 0 21 chr3 28323661 28323757 -131276026 - B4 SINE B4 -75 217 124 6 801 228 283 0 0 chr3 28324051 28324104 -131275679 - B4 SINE B4 -26 266 214 6 801 1049 241 108 3 chr3 28324119 28324472 -131275311 - Lx9 LINE L1 -8 7636 7247 6 801 294 286 52 185 chr3 28324499 28324731 -131275052 - B4 SINE B4 -71 221 21 6 801 743 279 66 82 chr3 28325593 28325783 -131274000 + MTE2a LTR MaLR 7 183 -196 6 801 195 42 0 0 chr3 28325783 28325807 -131273976 + (CAAG)n Simple_repeat Simple_repeat 3 26 0 6 801 743 279 66 82 chr3 28325807 28325995 -131273788 + MTE2a LTR MaLR 184 379 0 6 801 392 321 52 30 chr3 28327459 28327594 -131272189 - RSINE1 SINE B4 -25 140 3 6 801 309 278 45 18 chr3 28327975 28328085 -131271698 - B1F1 SINE Alu -36 113 1 6 801 1171 271 67 16 chr3 28329020 28329395 -131270388 + MTD LTR MaLR 11 404 -15 6 801 468 214 10 0 chr3 28330277 28330375 -131269408 + MTE2b LTR MaLR 10 108 -313 6 801 315 143 0 0 chr3 28330395 28330444 -131269339 + MTE2b LTR MaLR 75 123 -298 6 801 602 267 46 20 chr3 28331049 28331244 -131268539 + MTE2b LTR MaLR 171 370 -9 6 801 248 353 50 45 chr3 28331287 28331486 -131268297 + MLT1J2 LTR MaLR 22 221 -227 6 801 597 282 101 27 chr3 28331707 28332035 -131267748 - MER113 DNA MER1_type -43 478 127 6 801 1137 79 0 0 chr3 28332263 28332403 -131267380 + B1_Mus1 SINE Alu 1 140 -8 6 801 696 107 0 0 chr3 28332533 28332636 -131267147 + (TCTA)n Simple_repeat Simple_repeat 3 105 0 6 801 301 321 40 26 chr3 28332893 28333076 -131266707 + L1MEf LINE L1 314 500 -5594 6 801 707 250 114 27 chr3 28333130 28333393 -131266390 + ORR1D2 LTR MaLR 85 370 0 6 801 251 323 104 80 chr3 28333476 28333725 -131266058 + L1MEf LINE L1 583 837 -5363 6 801 273 323 71 0 chr3 28334809 28334936 -131264847 - B1F SINE Alu -13 136 1 6 801 669 292 14 0 chr3 28335845 28336057 -131263726 - ID_B1 SINE B4 -4 220 6 6 801 225 0 0 0 chr3 28336981 28337006 -131262777 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 6 801 187 270 104 57 chr3 28337054 28337115 -131262668 - MER5B DNA MER1_type -66 112 46 6 801 216 0 0 0 chr3 28337115 28337139 -131262644 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 6 801 187 270 104 57 chr3 28337139 28337183 -131262600 - MER5B DNA MER1_type -133 45 2 6 801 545 268 89 25 chr3 28337664 28337821 -131261962 + B3A SINE B2 1 167 -31 6 801 432 0 0 0 chr3 28337824 28337872 -131261911 + (CA)n Simple_repeat Simple_repeat 1 48 0 6 801 387 252 9 43 chr3 28337942 28338058 -131261725 + RSINE1 SINE B4 37 148 -17 6 801 258 298 52 17 chr3 28338810 28338926 -131260857 - MER5A DNA MER1_type -1 188 69 6 801 212 0 36 0 chr3 28339754 28339782 -131260001 + (CAAA)n Simple_repeat Simple_repeat 3 31 0 6 801 957 202 44 15 chr3 28339852 28340058 -131259725 - B3 SINE B2 0 216 5 6 801 263 266 65 24 chr3 28341956 28342064 -131257719 - MIRc SINE MIR -117 159 47 6 801 819 228 135 55 chr3 28342489 28342794 -131256989 + ORR1D1 LTR MaLR 1 356 -38 6 801 245 346 30 30 chr3 28343703 28343837 -131255946 - MER58B DNA MER1_type -32 309 176 6 801 286 235 12 0 chr3 28344753 28344923 -131254860 + (TG)n Simple_repeat Simple_repeat 2 173 0 6 801 826 264 14 19 chr3 28345844 28346060 -131253723 - B3 SINE B2 0 216 2 6 801 354 275 154 7 chr3 28346672 28346815 -131252968 + RSINE1 SINE B4 2 165 0 6 801 378 186 58 0 chr3 28348217 28348303 -131251480 - MTE2a LTR MaLR -29 350 260 6 801 357 247 0 73 chr3 28348716 28348812 -131250971 - B1_Mur1 SINE Alu -13 136 48 6 801 227 345 11 0 chr3 28349494 28349581 -131250202 + MER63D DNA AcHobo 279 366 -695 6 801 30 0 0 0 chr3 28350347 28350377 -131249406 + AT_rich Low_complexity Low_complexity 1 30 0 6 801 306 0 0 0 chr3 28350535 28350569 -131249214 + (TG)n Simple_repeat Simple_repeat 1 34 0 6 801 395 303 25 25 chr3 28351069 28351228 -131248555 - MIR SINE MIR -53 209 51 6 801 446 290 121 5 chr3 28353518 28353733 -131246050 - MER31B LTR ERV1 -214 252 13 6 801 2501 251 65 100 chr3 28354012 28354382 -131245401 - RCHARR1 DNA MER1_type 0 974 669 6 801 642 314 24 48 chr3 28354382 28354673 -131245110 - B4A SINE B4 -6 286 3 6 801 2501 251 65 100 chr3 28354673 28355309 -131244474 - RCHARR1 DNA MER1_type -306 668 4 6 801 1114 137 0 47 chr3 28355393 28355584 -131244199 - B2_Mm2 SINE B2 -9 186 5 6 801 239 79 26 0 chr3 28356120 28356158 -131243625 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 6 801 590 327 52 0 chr3 28357375 28357586 -131242197 - ID_B1 SINE B4 0 224 3 6 801 1013 65 65 7 chr3 28357769 28357908 -131241875 + B1_Mus1 SINE Alu 2 148 0 6 801 1099 254 41 44 chr3 28358081 28358444 -131241339 - RLTR17 LTR ERVK -226 466 105 6 801 225 0 0 0 chr3 28358710 28358735 -131241048 + (CA)n Simple_repeat Simple_repeat 2 26 0 6 801 844 251 5 0 chr3 28358739 28358926 -131240857 - B3 SINE B2 -28 188 1 6 801 360 0 0 0 chr3 28358932 28358972 -131240811 + (TG)n Simple_repeat Simple_repeat 1 40 0 6 801 525 16 0 0 chr3 28358972 28359033 -131240750 + (GA)n Simple_repeat Simple_repeat 1 62 0 6 801 719 227 13 19 chr3 28359033 28359190 -131240593 - B3 SINE B2 -57 159 4 6 801 251 298 45 160 chr3 28362740 28362896 -131236887 - MTE2b LTR MaLR -240 139 2 6 801 507 260 189 134 chr3 28363306 28363665 -131236118 - MTE2a LTR MaLR 0 379 1 6 801 1141 89 0 0 chr3 28363973 28364119 -131235664 + B1_Mus2 SINE Alu 2 147 0 6 801 363 60 0 0 chr3 28364967 28365017 -131234766 + (TC)n Simple_repeat Simple_repeat 1 50 0 6 801 327 65 0 0 chr3 28365008 28365054 -131234729 + (CA)n Simple_repeat Simple_repeat 1 46 0 6 801 598 297 58 0 chr3 28365091 28365246 -131234537 - RSINE1 SINE B4 0 165 2 6 801 702 279 58 49 chr3 28365246 28365470 -131234313 - B4 SINE B4 -66 226 1 6 801 192 216 0 0 chr3 28366357 28366408 -131233375 + CT-rich Low_complexity Low_complexity 2 52 0 6 801 258 32 0 0 chr3 28368218 28368249 -131231534 + (CA)n Simple_repeat Simple_repeat 2 32 0 6 801 436 32 32 0 chr3 28368275 28368337 -131231446 + (TG)n Simple_repeat Simple_repeat 1 64 0 6 801 386 292 251 19 chr3 28368338 28368569 -131231214 - B4 SINE B4 -6 286 2 6 801 242 306 98 76 chr3 28369173 28369245 -131230538 + B4A SINE B4 3 96 -196 6 801 378 143 0 0 chr3 28369245 28369308 -131230475 + B3 SINE B2 45 107 -109 6 801 242 306 98 76 chr3 28369308 28369449 -131230334 + B4A SINE B4 97 284 -8 6 801 761 117 8 0 chr3 28369468 28369596 -131230187 + (CATA)n Simple_repeat Simple_repeat 3 131 0 6 801 1437 260 46 49 chr3 28370639 28371071 -131228712 - Lx8 LINE L1 -178 7295 6865 6 801 246 194 0 0 chr3 28371504 28371566 -131228217 + CT-rich Low_complexity Low_complexity 4 65 0 6 801 424 258 29 2 chr3 28371572 28371687 -131228096 - PB1D10 SINE Alu -5 112 1 6 801 351 343 0 0 chr3 28372688 28372790 -131226993 + B3A SINE B2 83 184 -14 6 801 453 157 45 0 chr3 28372891 28373025 -131226758 + (TA)n Simple_repeat Simple_repeat 2 141 0 6 801 2169 98 127 12 chr3 28373031 28373432 -131226351 - RLTR47_MM LTR ERV1 -85 447 1 6 801 461 323 17 30 chr3 28373505 28373792 -131225991 - MuLV-int LTR ERV1 -80 7526 7263 6 801 559 290 52 34 chr3 28374254 28374634 -131225149 - MMERGLN-int LTR ERV1 -6798 808 428 6 801 492 143 144 1 chr3 28375082 28375219 -131224564 - RLTR47_MM LTR ERV1 0 532 311 6 801 324 0 0 0 chr3 28375233 28375269 -131224514 + (TC)n Simple_repeat Simple_repeat 2 37 0 7 801 757 172 6 6 chr3 28375269 28375427 -131224356 + (TA)n Simple_repeat Simple_repeat 1 158 0 7 801 351 44 0 0 chr3 28375704 28375749 -131224034 + (TG)n Simple_repeat Simple_repeat 1 45 0 7 801 302 238 191 0 chr3 28375768 28375852 -131223931 - B4 SINE B4 -7 285 186 7 801 465 289 65 12 chr3 28375856 28376024 -131223759 + RMER30 DNA MER1_type 7 183 -19 7 801 631 230 0 35 chr3 28376139 28376283 -131223500 - B1_Mur2 SINE Alu -2 147 9 7 801 263 190 17 0 chr3 28376567 28376625 -131223158 + MIR SINE MIR 113 171 -91 7 801 612 236 90 30 chr3 28376917 28377118 -131222665 - B3 SINE B2 -3 213 1 7 801 742 117 26 28 chr3 28377118 28377506 -131222277 + (TCTCTG)n Simple_repeat Simple_repeat 1 387 0 7 801 960 298 37 12 chr3 28379250 28379576 -131220207 - ORR1E LTR MaLR 0 359 26 7 801 198 308 95 42 chr3 28380132 28380227 -131219556 + MIR SINE MIR 127 226 -36 7 801 540 0 0 0 chr3 28380531 28380591 -131219192 + (TTCC)n Simple_repeat Simple_repeat 1 60 0 7 801 692 224 0 11 chr3 28380592 28380773 -131219010 + CT-rich Low_complexity Low_complexity 1 179 0 7 801 252 133 82 16 chr3 28381973 28382034 -131217749 - ID SINE ID -158 66 2 7 801 551 200 106 29 chr3 28382791 28382961 -131216822 - B4 SINE B4 -4 288 106 7 801 433 234 97 74 chr3 28383091 28383308 -131216475 + RMER5 LTR ERV1 293 514 -20 7 801 23 33 0 0 chr3 28383487 28383517 -131216266 + AT_rich Low_complexity Low_complexity 1 30 0 7 801 261 0 0 0 chr3 28383745 28383774 -131216009 + (TG)n Simple_repeat Simple_repeat 1 29 0 7 801 873 128 0 0 chr3 28383793 28383973 -131215810 + (GA)n Simple_repeat Simple_repeat 1 180 0 7 801 810 180 68 0 chr3 28385268 28385429 -131214354 - MTD LTR MaLR -247 172 1 7 801 567 267 47 19 chr3 28385648 28385862 -131213921 - L1M2 LINE L1 -1333 4810 4591 7 801 381 264 101 0 chr3 28386213 28386342 -131213441 - MER20 DNA MER1_type -75 144 3 7 801 627 14 0 0 chr3 28386916 28386988 -131212795 + (CTG)n Simple_repeat Simple_repeat 1 72 0 7 801 441 0 0 0 chr3 28387215 28387264 -131212519 + (TC)n Simple_repeat Simple_repeat 1 49 0 7 801 769 254 69 25 chr3 28388430 28388632 -131211151 - B3 SINE B2 -5 211 1 7 801 1177 167 39 57 chr3 28389375 28389604 -131210179 + URR1A DNA MER1_type 1 225 -1 7 801 326 208 62 38 chr3 28389743 28389823 -131209960 - ID4 SINE ID 0 83 2 7 801 183 80 0 0 chr3 28389869 28389894 -131209889 + (GAAAA)n Simple_repeat Simple_repeat 1 25 0 7 801 459 0 0 0 chr3 28390466 28390517 -131209266 + (TG)n Simple_repeat Simple_repeat 2 52 0 7 801 549 83 0 0 chr3 28391579 28391663 -131208120 + (TC)n Simple_repeat Simple_repeat 2 85 0 7 801 438 20 0 0 chr3 28391665 28391716 -131208067 + (CA)n Simple_repeat Simple_repeat 1 51 0 7 801 238 282 99 0 chr3 28392294 28392365 -131207418 - ID4_ SINE ID -4 79 2 7 801 907 36 0 0 chr3 28392549 28392660 -131207123 + B1_Mus2 SINE Alu 28 138 -9 7 801 207 0 0 0 chr3 28392660 28392683 -131207100 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 7 801 1303 241 73 14 chr3 28394305 28394659 -131205124 + MTE2b LTR MaLR 1 375 -4 7 801 627 327 0 0 chr3 28394889 28395054 -131204729 + Lx8 LINE L1 7154 7318 -155 7 801 25 0 0 0 chr3 28395159 28395184 -131204599 + AT_rich Low_complexity Low_complexity 1 25 0 7 801 369 349 68 16 chr3 28395859 28396051 -131203732 - MER105 DNA DNA -2 202 1 7 801 558 262 144 41 chr3 28396899 28397094 -131202689 + B3A SINE B2 1 215 -1 7 801 207 202 25 25 chr3 28397890 28397971 -131201812 + (TTTA)n Simple_repeat Simple_repeat 1 81 0 7 801 231 113 37 19 chr3 28397897 28397951 -131201832 + (TA)n Simple_repeat Simple_repeat 2 56 0 7 801 596 279 84 7 chr3 28398508 28398663 -131201120 + B3A SINE B2 16 182 -16 7 801 351 202 0 0 chr3 28398664 28398743 -131201040 + (CA)n Simple_repeat Simple_repeat 2 80 0 7 801 480 35 0 0 chr3 28399224 28399282 -131200501 + (CA)n Simple_repeat Simple_repeat 2 59 0 7 801 270 310 166 0 chr3 28399404 28399549 -131200234 - MIR SINE MIR -3 259 91 7 801 396 0 0 0 chr3 28399642 28399686 -131200097 + (TTTTA)n Simple_repeat Simple_repeat 3 46 0 7 801 1029 267 86 11 chr3 28402165 28402434 -131197349 + B4 SINE B4 3 291 -1 7 801 396 0 0 0 chr3 28403545 28403589 -131196194 + (CA)n Simple_repeat Simple_repeat 1 44 0 7 801 879 332 11 18 chr3 28405033 28405097 -131194686 - B4A SINE B4 -4 288 225 7 801 405 0 0 0 chr3 28405097 28405142 -131194641 + (TG)n Simple_repeat Simple_repeat 1 45 0 7 801 879 332 11 18 chr3 28405142 28405362 -131194421 - B4A SINE B4 -68 224 7 7 801 455 195 138 15 chr3 28406894 28407024 -131192759 - Lx4A LINE L1 -2 7056 6911 7 801 231 114 0 0 chr3 28407145 28407180 -131192603 + (GGGA)n Simple_repeat Simple_repeat 2 36 0 7 801 414 213 0 0 chr3 28407466 28407560 -131192223 + (TATATG)n Simple_repeat Simple_repeat 2 95 0 7 801 472 200 0 0 chr3 28407638 28407713 -131192070 - PB1D9 SINE Alu -45 75 1 7 801 231 333 11 0 chr3 28408096 28408183 -131191600 - L1MA9 LINE L1 -376 5936 5849 7 801 180 0 0 0 chr3 28408185 28408205 -131191578 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 7 801 204 40 0 0 chr3 28408207 28408232 -131191551 + (TTG)n Simple_repeat Simple_repeat 3 27 0 7 801 234 184 41 0 chr3 28408814 28408863 -131190920 + L1M2 LINE L1 5495 5545 -638 7 801 317 253 40 38 chr3 28408893 28409011 -131190772 + L1M2 LINE L1 5616 5735 -436 7 801 2685 156 93 14 chr3 28409295 28409809 -131189974 + RMER1B Other Other 511 1065 -1 7 801 338 348 77 36 chr3 28409896 28410090 -131189693 - MIRb SINE MIR -66 202 1 7 801 482 186 12 0 chr3 28410184 28410270 -131189513 + PB1D9 SINE Alu 33 119 -1 7 801 482 234 42 35 chr3 28411234 28411376 -131188407 + B4A SINE B4 1 143 -149 7 801 880 306 183 4 chr3 28412187 28412646 -131187137 + Lx8 LINE L1 6931 7471 -2 7 801 36270 35 1 0 chr3 28412759 28418610 -131181173 + L1Md_T LINE L1 1 5589 -297 7 801 9574 6 0 0 chr3 28418610 28419606 -131180177 + L1Md_T LINE L1 5590 6585 0 7 801 2413 148 55 11 chr3 28419610 28420047 -131179736 + RLTR13D1 LTR ERVK 351 806 0 7 801 657 114 0 9 chr3 28420047 28420162 -131179621 + L1_Mus4 LINE L1 6521 6634 -2 7 801 22 35 0 0 chr3 28420812 28420841 -131178942 + AT_rich Low_complexity Low_complexity 1 29 0 7 801 501 315 55 59 chr3 28421419 28421692 -131178091 - B4A SINE B4 -18 274 3 7 801 195 204 0 0 chr3 28421800 28421849 -131177934 + (TG)n Simple_repeat Simple_repeat 2 50 0 7 801 885 280 108 4 chr3 28421873 28422124 -131177659 - B4 SINE B4 -13 279 3 7 801 26 30 0 0 chr3 28422472 28422505 -131177278 + AT_rich Low_complexity Low_complexity 1 33 0 7 801 180 267 0 0 chr3 28423294 28423354 -131176429 + (TATATG)n Simple_repeat Simple_repeat 3 62 0 7 801 667 313 45 45 chr3 28424166 28424236 -131175547 - B4 SINE B4 -4 288 226 7 801 701 58 0 10 chr3 28424236 28424340 -131175443 + (TG)n Simple_repeat Simple_repeat 2 104 0 7 801 667 313 45 45 chr3 28424340 28424557 -131175226 - B4 SINE B4 -67 225 2 7 801 1776 165 54 9 chr3 28424659 28424995 -131174788 + RLTR15 LTR ERVK 1 351 -8 7 801 258 267 0 0 chr3 28424997 28425057 -131174726 + MTE2b LTR MaLR 27 86 -293 7 801 1029 299 16 0 chr3 28425063 28425314 -131174469 + MTE2b LTR MaLR 52 306 -73 7 801 917 297 114 39 chr3 28426637 28427208 -131172575 - L1MB5 LINE L1 -242 5932 5319 7 801 180 0 0 0 chr3 28427216 28427236 -131172547 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 7 801 1297 63 4 160 chr3 28427240 28427465 -131172318 - B2_Mm2 SINE B2 -5 190 1 7 801 215 233 200 0 chr3 28427492 28427552 -131172231 - PB1D7 SINE Alu -1 119 48 7 801 920 206 61 0 chr3 28427668 28427848 -131171935 + B3 SINE B2 1 191 -25 7 801 242 208 86 38 chr3 28427931 28428036 -131171747 - L1MC5 LINE L1 -225 7736 7627 7 801 544 267 80 22 chr3 28428126 28428264 -131171519 - B1_Mur3 SINE Alu -2 147 2 7 801 506 305 91 78 chr3 28428309 28428824 -131170959 - L1MC5 LINE L1 -387 7574 7053 7 801 372 217 24 12 chr3 28428824 28428908 -131170875 + B4A SINE B4 2 86 -206 7 801 352 263 0 0 chr3 28428934 28429010 -131170773 + Lx8 LINE L1 7033 7108 -365 7 801 630 99 0 0 chr3 28429079 28429170 -131170613 + (CGTG)n Simple_repeat Simple_repeat 1 91 0 7 801 324 0 0 0 chr3 28429170 28429205 -131170578 + (GA)n Simple_repeat Simple_repeat 1 36 0 7 801 588 297 41 15 chr3 28429322 28429517 -131170266 + B4A SINE B4 82 281 -11 7 801 467 223 54 62 chr3 28430003 28430132 -131169651 - B1F SINE Alu 0 149 22 7 801 607 217 9 0 chr3 28430019 28430134 -131169649 - ID_B1 SINE B4 -8 216 101 7 801 437 317 29 84 chr3 28430392 28430667 -131169116 - B4A SINE B4 -32 260 1 7 801 26 0 0 0 chr3 28430780 28430806 -131168977 + AT_rich Low_complexity Low_complexity 1 26 0 7 801 411 264 68 68 chr3 28431415 28431533 -131168250 + RSINE1 SINE B4 3 120 -45 7 801 324 0 0 0 chr3 28431541 28431577 -131168206 + (CA)n Simple_repeat Simple_repeat 2 37 0 7 801 484 168 53 8 chr3 28432140 28432387 -131167396 + (TAGA)n Simple_repeat Simple_repeat 1 258 0 7 801 2755 28 0 0 chr3 28433152 28433470 -131166313 + L1Md_F2 LINE L1 5269 5586 -297 7 801 8665 48 2 2 chr3 28433470 28434465 -131165318 + L1Md_F2 LINE L1 5587 6581 -1 7 801 372 306 86 32 chr3 28434778 28435058 -131164725 + L1M5 LINE L1 4472 4766 -1380 7 801 306 0 0 0 chr3 28435264 28435298 -131164485 + (TATG)n Simple_repeat Simple_repeat 2 35 0 7 801 606 296 28 0 chr3 28435298 28435440 -131164343 - ID_B1 SINE B4 -10 214 69 7 801 309 185 19 0 chr3 28436259 28436313 -131163470 + polypurine Low_complexity Low_complexity 3 57 0 7 801 804 186 8 11 chr3 28436313 28436572 -131163211 + GA-rich Low_complexity Low_complexity 1 257 0 7 801 210 258 0 0 chr3 28436676 28436738 -131163045 + (TG)n Simple_repeat Simple_repeat 1 62 0 8 801 546 324 6 0 chr3 28437161 28437340 -131162443 + (TG)n Simple_repeat Simple_repeat 1 180 0 8 801 404 312 64 81 chr3 28437439 28437735 -131162048 - B4 SINE B4 0 292 2 8 801 854 228 111 13 chr3 28438995 28439015 -131160768 - MTE2a LTR MaLR -17 362 330 8 801 200 0 48 48 chr3 28439015 28439057 -131160726 + (CAAA)n Simple_repeat Simple_repeat 2 43 0 8 801 854 238 88 30 chr3 28439057 28439325 -131160458 - MTE2a LTR MaLR -50 329 91 8 801 641 261 140 22 chr3 28439982 28440303 -131159480 + L1MB3 LINE L1 5719 6077 -106 8 801 1926 211 22 18 chr3 28440367 28440776 -131159007 - MTD LTR MaLR -2 417 5 8 801 279 224 0 17 chr3 28441390 28441449 -131158334 - MTD LTR MaLR -73 346 289 8 801 1918 147 12 57 chr3 28441476 28441808 -131157975 + Lx5 LINE L1 6732 7048 -2 8 801 718 270 138 19 chr3 28441941 28442202 -131157581 + B4 SINE B4 1 292 0 8 802 184 242 152 95 chr3 28442841 28442946 -131156837 - MIR SINE MIR -61 147 37 8 802 933 208 18 32 chr3 28443681 28443900 -131155883 + B3 SINE B2 1 216 0 8 802 300 182 45 0 chr3 28444592 28444658 -131155125 - HAL1-3A_ME LINE L1 -815 2043 1975 8 802 486 0 0 0 chr3 28444673 28444727 -131155056 + (TG)n Simple_repeat Simple_repeat 2 55 0 8 802 221 62 43 58 chr3 28445031 28445100 -131154683 + (TTA)n Simple_repeat Simple_repeat 2 69 0 8 802 614 275 0 82 chr3 28445209 28445403 -131154380 - B3A SINE B2 -16 182 5 8 802 1355 78 0 6 chr3 28446060 28446381 -131153402 + (CATA)n Simple_repeat Simple_repeat 1 319 0 8 802 313 290 117 27 chr3 28447282 28447470 -131152313 + MIRb SINE MIR 37 241 -27 8 802 242 403 24 0 chr3 28448030 28448154 -131151629 - MIRb SINE MIR -15 253 127 8 802 378 0 0 0 chr3 28448957 28448999 -131150784 + (TG)n Simple_repeat Simple_repeat 2 43 0 8 802 247 0 68 23 chr3 28449131 28449175 -131150608 + (CA)n Simple_repeat Simple_repeat 2 47 0 8 802 332 257 0 9 chr3 28449175 28449289 -131150494 + (TA)n Simple_repeat Simple_repeat 1 113 0 8 802 329 68 0 0 chr3 28449289 28449333 -131150450 + HAL1-3A_ME LINE L1 1975 2018 -840 8 802 213 94 0 0 chr3 28451641 28451673 -131148110 + (C)n Simple_repeat Simple_repeat 1 32 0 8 802 4480 64 12 2 chr3 28452125 28452690 -131147093 - L1_Mus2 LINE L1 -1 6565 5995 8 802 432 315 115 27 chr3 28452867 28453383 -131146400 + L1ME1 LINE L1 5623 6334 0 8 802 1571 32 0 26 chr3 28455448 28455639 -131144144 + B2_Mm1a SINE B2 2 187 -6 8 802 497 274 8 0 chr3 28456255 28456372 -131143411 - B4A SINE B4 -174 118 1 8 802 953 269 71 46 chr3 28457871 28458238 -131141545 - MTEb LTR MaLR -3 376 1 8 802 1667 274 105 11 chr3 28458241 28458812 -131140971 - MTEb-int LTR MaLR -3 1577 953 8 802 668 175 37 55 chr3 28458851 28459014 -131140769 - MTD LTR MaLR -259 160 1 8 802 465 110 0 0 chr3 28459123 28459196 -131140587 + (TG)n Simple_repeat Simple_repeat 1 73 0 8 802 569 276 22 7 chr3 28460292 28460427 -131139356 - B1F1 SINE Alu -12 137 1 8 802 201 108 0 0 chr3 28460651 28460688 -131139095 + (T)n Simple_repeat Simple_repeat 1 37 0 8 802 300 291 8 45 chr3 28461065 28461198 -131138585 - HAL1-3A_ME LINE L1 -755 2103 1976 8 802 411 290 59 35 chr3 28461211 28461509 -131138274 - B4 SINE B4 -20 272 2 8 802 840 147 0 42 chr3 28462174 28462316 -131137467 + B1_Mus1 SINE Alu 3 138 -10 8 802 567 78 0 0 chr3 28462317 28462394 -131137389 + (CAAAG)n Simple_repeat Simple_repeat 3 79 0 8 802 369 0 0 0 chr3 28462873 28462914 -131136869 + (TC)n Simple_repeat Simple_repeat 2 42 0 8 802 259 289 168 83 chr3 28464625 28464835 -131134948 + MIRb SINE MIR 31 256 -6 8 802 812 246 24 24 chr3 28465253 28465465 -131134318 - B3 SINE B2 0 216 5 8 802 315 71 0 0 chr3 28465473 28465515 -131134268 + (CATA)n Simple_repeat Simple_repeat 4 45 0 8 802 470 266 180 0 chr3 28465519 28465647 -131134136 - B3 SINE B2 -65 151 1 8 802 10047 97 64 2 chr3 28467004 28469045 -131130738 - L1_Mus3 LINE L1 0 6638 4469 8 802 201 74 0 0 chr3 28469160 28469187 -131130596 + (TA)n Simple_repeat Simple_repeat 1 27 0 8 802 294 29 0 0 chr3 28469266 28469301 -131130482 + (TA)n Simple_repeat Simple_repeat 1 35 0 8 802 1083 178 81 5 chr3 28469547 28469756 -131130027 - URR1B DNA MER1_type 0 225 1 8 802 180 176 0 0 chr3 28470720 28470754 -131129029 + CT-rich Low_complexity Low_complexity 2 35 0 8 802 208 121 0 0 chr3 28470760 28470793 -131128990 + (TG)n Simple_repeat Simple_repeat 2 34 0 8 802 980 193 123 43 chr3 28470808 28471153 -131128630 - MTD LTR MaLR -20 399 6 8 802 348 184 45 11 chr3 28471230 28471318 -131128465 - Lx7 LINE L1 0 7696 7606 8 802 892 291 13 5 chr3 28471489 28471713 -131128070 - B4 SINE B4 -66 226 1 8 802 1134 133 109 33 chr3 28471728 28471938 -131127845 + URR1A DNA MER1_type 1 226 0 8 802 553 340 61 8 chr3 28474007 28474271 -131125512 - B4 SINE B4 -12 280 3 8 802 2668 175 44 12 chr3 28474452 28474950 -131124833 + RMER20A LTR ERVK 3 516 0 8 802 396 0 0 0 chr3 28475263 28475307 -131124476 + (CA)n Simple_repeat Simple_repeat 2 45 0 8 802 214 311 14 0 chr3 28475606 28475680 -131124103 + (TG)n Simple_repeat Simple_repeat 2 76 0 8 802 369 248 54 186 chr3 28475695 28476012 -131123771 - B4 SINE B4 -17 275 1 8 802 315 0 0 0 chr3 28477426 28477461 -131122322 + (TTTA)n Simple_repeat Simple_repeat 1 35 0 8 802 451 355 113 11 chr3 28478881 28479066 -131120717 - B4 SINE B4 -6 286 83 8 802 1934 99 31 21 chr3 28479069 28479357 -131120426 - RMER1A Other Other -10 1020 730 8 802 1115 201 46 17 chr3 28479361 28479599 -131120184 - RMER1A Other Other -486 544 300 8 802 514 284 12 24 chr3 28481024 28481190 -131118593 + RSINE1 SINE B4 2 165 0 8 802 450 237 17 50 chr3 28481248 28481368 -131118415 + PB1D7 SINE Alu 4 119 -1 8 802 312 308 9 9 chr3 28481427 28481532 -131118251 + MIRb SINE MIR 88 192 -76 8 802 1571 156 117 51 chr3 28481907 28482259 -131117524 - Lx5 LINE L1 0 7050 6676 8 802 220 365 9 19 chr3 28482259 28482365 -131117418 + MIRb SINE MIR 122 226 -42 8 802 941 258 34 127 chr3 28482748 28483166 -131116617 - MTE2a LTR MaLR 0 379 1 8 802 608 311 3 8 chr3 28483435 28483610 -131116173 + ID_B1 SINE B4 69 240 -52 8 802 414 0 0 0 chr3 28485883 28485929 -131113854 + (TTG)n Simple_repeat Simple_repeat 2 47 0 8 802 1732 112 35 151 chr3 28486117 28486580 -131113203 + RMER17C LTR ERVK 2 410 0 8 802 1228 181 122 37 chr3 28486625 28486823 -131112960 - RMER17C LTR ERVK 0 410 198 8 802 525 44 0 0 chr3 28486823 28486891 -131112892 + (CA)n Simple_repeat Simple_repeat 2 69 0 8 802 1228 181 122 37 chr3 28486891 28487070 -131112713 - RMER17C LTR ERVK -213 197 2 8 802 2991 46 0 21 chr3 28487176 28487557 -131112226 + L1Md_F2 LINE L1 6201 6573 -9 8 802 1268 38 0 0 chr3 28487707 28487865 -131111918 + L1Md_F2 LINE L1 6425 6582 0 8 802 181 191 42 21 chr3 28487996 28488044 -131111739 - L4 LINE RTE -206 1823 1775 8 802 640 193 181 60 chr3 28488287 28488469 -131111314 + MTEa LTR MaLR 16 219 -160 8 802 288 219 16 0 chr3 28488484 28488548 -131111235 + MTEa LTR MaLR 315 379 0 8 802 796 241 77 98 chr3 28489120 28489497 -131110286 - MTE2a LTR MaLR -4 375 7 8 802 646 270 30 25 chr3 28489620 28489821 -131109962 + B3 SINE B2 12 213 -3 8 802 338 281 0 50 chr3 28490048 28490149 -131109634 - PB1D7 SINE Alu -2 118 23 8 802 489 165 0 0 chr3 28493968 28494065 -131105718 + (TG)n Simple_repeat Simple_repeat 2 98 0 8 802 1151 245 7 57 chr3 28495442 28495741 -131104042 + B4 SINE B4 9 292 0 8 802 979 266 36 70 chr3 28496670 28497058 -131102725 - MTEb LTR MaLR -2 377 3 8 802 280 317 18 73 chr3 28499110 28499219 -131100564 - B4A SINE B4 -177 115 13 8 802 565 284 0 0 chr3 28499630 28499757 -131100026 + RSINE1 SINE B4 1 127 -38 8 802 501 62 0 0 chr3 28499796 28499861 -131099922 + (CA)n Simple_repeat Simple_repeat 1 65 0 8 802 8121 31 0 0 chr3 28501163 28502097 -131097686 + L1Md_T LINE L1 5649 6582 0 1 802 191 114 29 0 chr3 28502910 28502945 -131096838 + (GAAAA)n Simple_repeat Simple_repeat 5 40 0 2 802 435 273 72 13 chr3 28503709 28503861 -131095922 + MER5A DNA MER1_type 29 189 0 3 802 679 284 52 24 chr3 28504987 28505200 -131094583 + B4 SINE B4 11 229 -63 4 802 501 234 16 24 chr3 28505209 28505336 -131094447 + B1_Mur1 SINE Alu 13 138 -11 5 802 848 15 0 51 chr3 28505339 28505476 -131094307 + (GGGA)n Simple_repeat Simple_repeat 4 133 0 6 802 212 333 43 0 chr3 28505485 28505578 -131094205 + MIR SINE MIR 50 146 -116 7 802 265 300 0 0 chr3 28505888 28505958 -131093825 + U4 snRNA snRNA 1 70 -75 8 802 800 262 62 37 chr3 28506702 28506944 -131092839 + B4A SINE B4 1 248 -44 9 802 324 140 34 23 chr3 28506953 28507041 -131092742 + (CAGAGA)n Simple_repeat Simple_repeat 2 90 0 1 802 255 211 0 19 chr3 28507051 28507104 -131092679 + B4A SINE B4 223 274 -18 9 802 198 71 0 0 chr3 28507118 28507146 -131092637 + (CA)n Simple_repeat Simple_repeat 1 28 0 1 802 3239 31 31 3 chr3 28507687 28508072 -131091711 - MTA_Mm LTR MaLR 0 396 1 1 802 9879 13 0 0 chr3 28508072 28509170 -131090613 - MTA_Mm-int LTR MaLR 0 1098 1 1 802 1152 64 0 6 chr3 28509170 28509328 -131090455 - MTA_Mm LTR MaLR 0 400 244 1 802 666 239 18 60 chr3 28510068 28510286 -131089497 + B3A SINE B2 5 213 -3 1 802 320 304 40 68 chr3 28512482 28512630 -131087153 + RSINE1 SINE B4 3 146 -19 1 802 658 318 31 0 chr3 28512639 28512834 -131086949 - B4A SINE B4 -81 211 11 1 802 205 207 52 0 chr3 28513208 28513266 -131086517 + (TG)n Simple_repeat Simple_repeat 1 61 0 1 802 272 230 13 13 chr3 28514279 28514354 -131085429 + B4 SINE B4 134 208 -84 1 802 405 0 0 0 chr3 28514500 28514545 -131085238 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 802 304 321 100 9 chr3 28514547 28514657 -131085126 - RSINE1 SINE B4 -41 124 5 1 802 211 315 36 36 chr3 28514742 28514854 -131084929 - MIRb SINE MIR -111 157 46 2 802 252 220 0 0 chr3 28518197 28518247 -131081536 + B3A SINE B2 88 137 -61 2 802 378 0 0 0 chr3 28518247 28518289 -131081494 + (CA)n Simple_repeat Simple_repeat 1 42 0 2 802 198 103 0 0 chr3 28518972 28519001 -131080782 + (CATA)n Simple_repeat Simple_repeat 4 32 0 2 802 967 263 160 28 chr3 28519100 28519809 -131079974 - L1MA9 LINE L1 -195 6117 5270 2 802 213 280 0 0 chr3 28521676 28521726 -131078057 + MIRb SINE MIR 209 258 -10 2 802 306 300 148 52 chr3 28522574 28522940 -131076843 - RMER10A LTR ERVL -24 418 18 2 802 464 298 212 16 chr3 28523048 28523223 -131076560 + ID_B1 SINE B4 2 214 -10 2 802 440 81 22 22 chr3 28523223 28523312 -131076471 + (TAGA)n Simple_repeat Simple_repeat 1 89 0 2 802 2517 58 54 3 chr3 28523320 28523651 -131076132 + L1_Mus1 LINE L1 6220 6567 0 2 802 365 188 12 0 chr3 28523663 28523743 -131076040 + GA-rich Low_complexity Low_complexity 3 83 0 3 802 864 29 0 0 chr3 28523745 28523848 -131075935 + (GGAAA)n Simple_repeat Simple_repeat 4 106 0 3 802 342 320 52 60 chr3 28524861 28525094 -131074689 + MIRc SINE MIR 18 248 -20 3 802 22 0 0 0 chr3 28526397 28526419 -131073364 + AT_rich Low_complexity Low_complexity 1 22 0 3 802 21 57 0 0 chr3 28527113 28527148 -131072635 + AT_rich Low_complexity Low_complexity 1 35 0 3 802 23 86 0 0 chr3 28527308 28527366 -131072417 + AT_rich Low_complexity Low_complexity 1 58 0 3 802 405 58 0 0 chr3 28528702 28528754 -131071029 + (TTTG)n Simple_repeat Simple_repeat 3 54 0 3 802 257 260 72 35 chr3 28529552 28529674 -131070109 - PB1 SINE Alu -91 220 22 3 802 279 0 0 0 chr3 28529994 28530025 -131069758 + (CA)n Simple_repeat Simple_repeat 2 32 0 3 802 207 0 0 0 chr3 28530139 28530162 -131069621 + (TATG)n Simple_repeat Simple_repeat 4 26 0 3 802 386 327 0 26 chr3 28530193 28530306 -131069477 - B4 SINE B4 -2 290 181 4 802 564 278 47 31 chr3 28531667 28531860 -131067923 + B3A SINE B2 2 197 -1 4 802 522 0 0 0 chr3 28532200 28532258 -131067525 + (TC)n Simple_repeat Simple_repeat 1 58 0 4 802 642 122 0 0 chr3 28533996 28534103 -131065680 + (GGAA)n Simple_repeat Simple_repeat 3 109 0 4 802 735 78 0 0 chr3 28534115 28534218 -131065565 + (GAAAA)n Simple_repeat Simple_repeat 5 107 0 4 802 362 163 120 20 chr3 28535106 28535206 -131064577 - Lx9 LINE L1 -1 7643 7534 4 802 743 278 27 5 chr3 28535229 28535453 -131064330 - Lx9 LINE L1 -171 7473 7245 4 802 467 288 8 0 chr3 28535453 28535571 -131064212 - PB1D9 SINE Alu 0 120 2 4 802 579 204 26 0 chr3 28536287 28536400 -131063383 + Lx8 LINE L1 6341 6456 -1017 4 802 219 280 51 51 chr3 28536497 28536576 -131063207 + ID2 SINE ID 3 81 -2 4 802 947 252 33 0 chr3 28536507 28536721 -131063062 + B4 SINE B4 13 233 -59 4 802 429 20 0 0 chr3 28536765 28536815 -131062968 + (CA)n Simple_repeat Simple_repeat 1 50 0 5 802 1078 188 41 0 chr3 28537963 28538160 -131061623 - B3 SINE B2 -10 206 2 5 802 661 338 21 21 chr3 28538415 28538699 -131061084 + B4A SINE B4 2 285 -7 5 802 1197 57 6 0 chr3 28538789 28538948 -131060835 + B2_Mm2 SINE B2 2 161 -34 5 802 369 0 0 0 chr3 28538948 28538989 -131060794 + (TAAA)n Simple_repeat Simple_repeat 1 41 0 5 802 1055 139 0 6 chr3 28538992 28539173 -131060610 + (GAA)n Simple_repeat Simple_repeat 1 180 0 5 802 1065 65 13 6 chr3 28539287 28539443 -131060340 + B2_Mm2 SINE B2 2 158 -37 5 802 297 0 0 0 chr3 28539443 28539476 -131060307 + (TAAA)n Simple_repeat Simple_repeat 2 34 0 5 802 944 134 16 38 chr3 28539476 28539505 -131060278 + B2_Mm1t SINE B2 160 183 -10 5 802 414 306 15 22 chr3 28539840 28539899 -131059884 - B4 SINE B4 -48 244 189 5 802 180 0 0 0 chr3 28539899 28539919 -131059864 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 6 802 414 312 215 11 chr3 28539919 28540073 -131059710 - B4 SINE B4 -104 188 1 5 802 709 114 8 8 chr3 28540121 28540245 -131059538 + (GGAGA)n Simple_repeat Simple_repeat 3 126 0 6 802 416 337 75 64 chr3 28540415 28540681 -131059102 + B4 SINE B4 2 270 -22 6 802 435 261 102 37 chr3 28540772 28540959 -131058824 - MLT2B4 LTR ERVL -355 201 3 6 802 228 67 0 0 chr3 28543005 28543035 -131056748 + (TTTTC)n Simple_repeat Simple_repeat 3 32 0 6 802 1227 97 0 0 chr3 28543035 28543211 -131056572 + (TCTCC)n Simple_repeat Simple_repeat 5 180 0 6 802 270 0 0 0 chr3 28543211 28543240 -131056543 + (TTTTC)n Simple_repeat Simple_repeat 1 30 0 6 802 742 293 101 49 chr3 28543252 28543384 -131056399 - MTEa LTR MaLR -34 345 219 6 802 479 31 15 0 chr3 28543384 28543449 -131056334 + (TG)n Simple_repeat Simple_repeat 2 67 0 6 802 742 293 101 49 chr3 28543449 28543643 -131056140 - MTEa LTR MaLR -161 218 2 6 802 1199 305 159 7 chr3 28543931 28544680 -131055103 + L1MA6 LINE L1 5196 6060 -240 6 802 389 20 20 0 chr3 28545141 28545191 -131054592 + (CA)n Simple_repeat Simple_repeat 1 51 0 7 802 289 309 22 50 chr3 28545858 28546001 -131053782 - MIR3 SINE MIR -46 162 31 7 802 22 0 0 0 chr3 28546781 28546803 -131052980 + AT_rich Low_complexity Low_complexity 1 22 0 7 802 919 247 29 75 chr3 28546897 28547203 -131052580 + B4A SINE B4 1 292 0 7 802 326 80 20 0 chr3 28554920 28554970 -131044813 + (CA)n Simple_repeat Simple_repeat 1 51 0 7 802 532 241 88 14 chr3 28555378 28555525 -131044258 + ID_B1 SINE B4 1 158 -66 7 802 732 158 0 0 chr3 28555563 28555696 -131044087 + (TG)n Simple_repeat Simple_repeat 1 133 0 7 802 787 271 226 19 chr3 28555725 28556136 -131043647 - MLT2B4 LTR ERVL -58 498 3 7 802 189 0 0 0 chr3 28556250 28556271 -131043512 + (CAAAAA)n Simple_repeat Simple_repeat 2 22 0 7 802 211 222 0 0 chr3 28556486 28556531 -131043252 + GA-rich Low_complexity Low_complexity 4 48 0 7 802 630 143 0 0 chr3 28557573 28557678 -131042105 + (TTCTC)n Simple_repeat Simple_repeat 4 108 0 8 802 8020 75 20 3 chr3 28557703 28559315 -131040468 - L1_Mus3 LINE L1 -7 6631 4991 8 802 7489 79 13 3 chr3 28559315 28560312 -131039471 + Lx LINE L1 5642 6648 -6 8 802 188 268 0 0 chr3 28563341 28563382 -131036401 + MIRm SINE MIR 112 152 -124 8 802 749 171 6 76 chr3 28564392 28564550 -131035233 - B1_Mur3 SINE Alu -2 147 1 8 802 234 128 0 0 chr3 28567507 28567546 -131032237 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 8 802 286 262 77 31 chr3 28572428 28572558 -131027225 + L2b LINE L2 699 834 -2585 8 802 214 303 185 17 chr3 28572672 28572910 -131026873 + L2b LINE L2 1692 1969 -1450 8 802 290 350 35 14 chr3 28573092 28573234 -131026549 + L2b LINE L2 2280 2424 -995 8 802 207 0 0 0 chr3 28573274 28573297 -131026486 + (CAAAC)n Simple_repeat Simple_repeat 2 24 0 8 802 194 347 101 12 chr3 28573477 28573646 -131026137 + L2b LINE L2 2797 2980 -439 8 803 193 284 23 58 chr3 28573721 28573807 -131025976 + L2b LINE L2 3067 3149 -277 8 803 240 341 0 23 chr3 28573875 28573962 -131025821 + L2b LINE L2 3288 3372 -3 8 803 21 36 0 0 chr3 28574658 28574686 -131025097 + AT_rich Low_complexity Low_complexity 1 28 0 8 803 1337 231 107 28 chr3 28575723 28576191 -131023592 - RLTR16 LTR ERVK 0 505 1 8 803 825 114 29 29 chr3 28576813 28576949 -131022834 - MURVY-LTR LTR ERV1 0 519 384 9 803 455 281 35 30 chr3 28577146 28577315 -131022468 - RMER15 LTR ERVL -16 559 390 9 803 205 122 49 0 chr3 28577315 28577356 -131022427 + A-rich Low_complexity Low_complexity 5 47 0 9 803 236 342 38 31 chr3 28577413 28577573 -131022210 - RMER15 LTR ERVL -414 161 1 9 803 327 293 0 0 chr3 28578243 28578318 -131021465 + B4 SINE B4 11 85 -207 9 803 207 152 43 0 chr3 28578318 28578364 -131021419 + A-rich Low_complexity Low_complexity 1 48 0 9 803 781 280 11 11 chr3 28578366 28578557 -131021226 + B4 SINE B4 97 287 -5 9 803 582 15 0 0 chr3 28578567 28578634 -131021149 + (CA)n Simple_repeat Simple_repeat 2 68 0 9 803 417 239 88 26 chr3 28582663 28582882 -131016901 + Lx8 LINE L1 5697 5931 -366 9 803 2129 228 42 101 chr3 28582885 28583530 -131016253 + RMER19C LTR ERVK 1 607 -4 9 803 315 0 0 0 chr3 28583530 28583565 -131016218 + (TG)n Simple_repeat Simple_repeat 2 36 0 9 803 2243 188 20 4 chr3 28584723 28585177 -131014606 - RLTR28 LTR ERVL -63 461 1 9 803 492 223 45 0 chr3 28586179 28586291 -131013492 + PB1D10 SINE Alu 1 117 0 1 803 390 42 0 0 chr3 28586531 28586579 -131013204 + (TTA)n Simple_repeat Simple_repeat 3 50 0 1 803 467 168 248 0 chr3 28586834 28586947 -131012836 - B1_Mur1 SINE Alu -8 141 1 1 803 1846 160 87 30 chr3 28589080 28589518 -131010265 + RLTR20B3 LTR ERVK 5 467 -110 1 803 1206 124 172 4 chr3 28589522 28589749 -131010034 + Lx2 LINE L1 6729 6993 -4 1 803 375 240 104 0 chr3 28589749 28589845 -131009938 + RLTR20B3 LTR ERVK 459 564 -13 1 803 2117 108 13 3 chr3 28590201 28590507 -131009276 + RLTR27 LTR ERVK 1 309 0 1 803 541 211 172 12 chr3 28590614 28590777 -131009006 - B3A SINE B2 -9 189 1 1 803 339 263 71 0 chr3 28590890 28590989 -131008794 + L1MDa LINE L1 18 123 -6510 1 803 315 71 0 0 chr3 28591007 28591049 -131008734 + (T)n Simple_repeat Simple_repeat 1 42 0 1 803 180 0 0 0 chr3 28591049 28591069 -131008714 + (TG)n Simple_repeat Simple_repeat 1 20 0 1 803 1171 57 0 0 chr3 28591070 28591211 -131008572 - B1_Mus2 SINE Alu -6 141 1 1 803 341 93 19 0 chr3 28591347 28591401 -131008382 + (ATGGTG)n Simple_repeat Simple_repeat 2 56 0 1 803 207 0 0 0 chr3 28591416 28591439 -131008344 + (TAA)n Simple_repeat Simple_repeat 2 24 0 1 803 633 289 32 40 chr3 28591439 28591688 -131008095 + Lx8 LINE L1 6873 7119 -354 1 803 252 254 28 14 chr3 28591710 28591782 -131008001 + L1MD1 LINE L1 6093 6165 -77 1 803 1850 137 7 10 chr3 28591783 28592093 -131007690 + Lx LINE L1 6337 6645 -9 1 803 4187 96 128 9 chr3 28592093 28592476 -131007307 - RMER17A LTR ERVK 0 751 312 1 803 1126 87 12 0 chr3 28592476 28592649 -131007134 + (GGAGA)n Simple_repeat Simple_repeat 2 176 0 1 803 4187 96 128 9 chr3 28592649 28592936 -131006847 - RMER17A LTR ERVK -440 311 2 1 803 207 0 0 0 chr3 28592937 28592960 -131006823 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 803 326 291 171 6 chr3 28593072 28593248 -131006535 - ID_B1 SINE B4 -12 212 8 1 803 3725 45 0 0 chr3 28593281 28593724 -131006059 + L1Md_T LINE L1 6140 6582 0 1 803 621 49 0 0 chr3 28595141 28595222 -131004561 + (TC)n Simple_repeat Simple_repeat 2 82 0 1 803 351 317 127 56 chr3 28595535 28595732 -131004051 + B4A SINE B4 82 292 0 1 803 249 33 0 0 chr3 28595766 28595796 -131003987 + (TGAA)n Simple_repeat Simple_repeat 2 31 0 1 803 256 266 26 44 chr3 28596095 28596209 -131003574 - PB1 SINE Alu -15 112 1 1 803 333 216 0 39 chr3 28599229 28599306 -131000477 - HAL1-3A_ME LINE L1 -809 2049 1976 1 803 480 186 36 27 chr3 28599306 28599750 -131000033 + (TG)n Simple_repeat Simple_repeat 1 447 0 1 803 544 261 18 53 chr3 28599768 28599938 -130999845 - RSINE1 SINE B4 0 165 2 1 803 381 325 93 15 chr3 28600576 28600883 -130998900 + MLT1D LTR MaLR 270 504 -120 1 803 238 198 12 24 chr3 28601403 28601486 -130998297 + GA-rich Low_complexity Low_complexity 4 85 0 1 803 354 123 0 0 chr3 28602004 28602061 -130997722 + (TA)n Simple_repeat Simple_repeat 1 57 0 1 803 4832 105 19 4 chr3 28602071 28602770 -130997013 + L1_Mus3 LINE L1 5919 6627 -11 1 803 277 329 0 0 chr3 28602913 28602992 -130996791 + ID4 SINE ID 4 82 -1 1 803 274 0 0 159 chr3 28603090 28603228 -130996555 + (CAGAG)n Simple_repeat Simple_repeat 5 120 0 1 803 319 253 0 95 chr3 28603231 28603253 -130996530 + B1_Mur1 SINE Alu 42 59 -90 1 803 996 159 0 0 chr3 28603253 28603429 -130996354 + (CAGAGA)n Simple_repeat Simple_repeat 1 176 0 1 803 319 253 0 95 chr3 28603429 28603511 -130996272 + B1_Mur1 SINE Alu 60 136 -13 1 803 185 0 0 39 chr3 28603511 28603537 -130996246 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 1 803 507 346 10 16 chr3 28604051 28604245 -130995538 + ID_B1 SINE B4 6 198 -26 1 803 453 19 0 0 chr3 28604429 28604483 -130995300 + (TTTTC)n Simple_repeat Simple_repeat 2 55 0 1 803 208 147 0 0 chr3 28605459 28605493 -130994290 + (CAGA)n Simple_repeat Simple_repeat 3 36 0 1 803 417 288 121 26 chr3 28608105 28608304 -130991479 + B3A SINE B2 3 210 -6 1 803 372 225 0 14 chr3 28608769 28608841 -130990942 - PB1D9 SINE Alu -48 72 2 1 803 300 239 0 0 chr3 28609012 28609079 -130990704 - RMER15 LTR ERVL -104 471 405 1 803 303 340 9 9 chr3 28609122 28609232 -130990551 - Lx8 LINE L1 -247 7226 7117 1 803 639 313 26 4 chr3 28609454 28609685 -130990098 - MLT1D LTR MaLR -11 494 259 1 803 1378 184 23 69 chr3 28609680 28610030 -130989753 - MTC-int LTR MaLR -122 1136 803 1 803 476 275 15 22 chr3 28610047 28610181 -130989602 + Lx8 LINE L1 7133 7265 -208 1 803 322 243 0 0 chr3 28610181 28610251 -130989532 + RMER15 LTR ERVL 402 471 -104 1 803 3653 184 49 11 chr3 28610280 28611037 -130988746 - MTC-int LTR MaLR -472 786 1 1 803 558 160 23 24 chr3 28611037 28611224 -130988559 - MTC LTR MaLR 0 421 297 1 803 306 301 188 5 chr3 28611240 28611447 -130988336 - MLT1D LTR MaLR -260 245 1 1 803 282 328 105 40 chr3 28611785 28611909 -130987874 + B1F SINE Alu 11 142 -7 1 803 441 285 8 8 chr3 28612227 28612358 -130987425 + B1F SINE Alu 16 146 -3 1 803 264 253 101 0 chr3 28612919 28612998 -130986785 + MIRc SINE MIR 75 161 -107 1 803 24 0 0 0 chr3 28614402 28614426 -130985357 + AT_rich Low_complexity Low_complexity 1 24 0 1 803 435 213 0 21 chr3 28614521 28614617 -130985166 + B3 SINE B2 1 94 -122 1 803 391 340 71 32 chr3 28614650 28614805 -130984978 + RSINE1 SINE B4 1 161 -4 1 803 4554 156 32 5 chr3 28614906 28615725 -130984058 - L1_Mur3 LINE L1 -1331 4549 3709 1 803 187 305 84 19 chr3 28616592 28616699 -130983084 + L3 LINE CR1 1666 1779 -2710 1 803 306 0 0 0 chr3 28617044 28617078 -130982705 + (TG)n Simple_repeat Simple_repeat 1 34 0 1 803 340 279 0 44 chr3 28617174 28617264 -130982519 - B4 SINE B4 -119 173 88 1 803 210 37 0 0 chr3 28618024 28618051 -130981732 + (TCTG)n Simple_repeat Simple_repeat 2 28 0 1 803 742 269 113 27 chr3 28618653 28618909 -130980874 + B4A SINE B4 14 291 -1 1 803 353 75 19 0 chr3 28619146 28619199 -130980584 + (TAGA)n Simple_repeat Simple_repeat 4 57 0 1 803 272 326 29 65 chr3 28619206 28619386 -130980397 + L1ME3A LINE L1 5516 5687 -486 1 803 869 186 14 0 chr3 28619386 28619531 -130980252 + B1_Mur2 SINE Alu 2 148 -1 1 803 272 326 29 65 chr3 28619531 28619629 -130980154 + L1ME3A LINE L1 5688 5784 -389 1 803 3307 33 2 10 chr3 28619666 28620062 -130979721 + L1Md_F2 LINE L1 6188 6580 -2 1 803 294 281 79 0 chr3 28620278 28620392 -130979391 + L1ME3A LINE L1 6048 6170 -3 1 803 315 0 0 0 chr3 28622090 28622125 -130977658 + (CA)n Simple_repeat Simple_repeat 2 36 0 1 803 225 269 0 0 chr3 28622188 28622240 -130977543 + B1F2 SINE Alu 11 62 -87 1 803 497 262 97 22 chr3 28622867 28623066 -130976717 + Lx6 LINE L1 6553 6742 -308 1 803 387 132 211 0 chr3 28623066 28623142 -130976641 - B3 SINE B2 -124 92 1 1 803 251 253 0 40 chr3 28623156 28623255 -130976528 - Lx6 LINE L1 -26 7434 7340 1 803 970 266 55 4 chr3 28623268 28623471 -130976312 + Lx6 LINE L1 7165 7368 -92 1 803 261 0 0 0 chr3 28623471 28623500 -130976283 + (TG)n Simple_repeat Simple_repeat 1 29 0 1 803 970 266 55 4 chr3 28623500 28623553 -130976230 + Lx6 LINE L1 7369 7433 -27 1 803 852 145 0 0 chr3 28623567 28623698 -130976085 + B3 SINE B2 1 131 -85 1 803 25 31 0 0 chr3 28623709 28623741 -130976042 + AT_rich Low_complexity Low_complexity 1 32 0 1 803 843 245 29 14 chr3 28623749 28623956 -130975827 + B3 SINE B2 2 211 -5 1 803 420 20 0 0 chr3 28624221 28624270 -130975513 + (TG)n Simple_repeat Simple_repeat 1 49 0 1 803 318 233 96 0 chr3 28624730 28624803 -130974980 - ID4_ SINE ID -3 80 1 1 803 219 146 0 0 chr3 28627584 28627625 -130972158 + (TGGA)n Simple_repeat Simple_repeat 4 44 0 1 803 406 297 65 7 chr3 28627901 28628040 -130971743 - B1F1 SINE Alu -1 148 2 1 803 216 0 0 0 chr3 28628118 28628142 -130971641 + (CA)n Simple_repeat Simple_repeat 2 25 0 1 803 309 51 0 0 chr3 28628142 28628181 -130971602 + (TA)n Simple_repeat Simple_repeat 1 39 0 1 803 334 255 221 6 chr3 28628644 28628802 -130970981 - MER2 DNA MER2_type -39 306 115 1 803 25 0 0 0 chr3 28629741 28629766 -130970017 + AT_rich Low_complexity Low_complexity 1 25 0 1 803 312 91 0 0 chr3 28630097 28630141 -130969642 + (CA)n Simple_repeat Simple_repeat 2 45 0 1 803 3484 116 0 16 chr3 28630320 28630836 -130968947 - Lx LINE L1 -1 6653 6146 1 803 27 92 0 0 chr3 28631153 28631229 -130968554 + AT_rich Low_complexity Low_complexity 1 76 0 1 803 401 266 12 0 chr3 28631691 28631803 -130967980 + B3 SINE B2 2 116 -79 1 803 424 86 0 28 chr3 28631803 28631875 -130967908 + (CA)n Simple_repeat Simple_repeat 1 70 0 1 803 900 210 88 109 chr3 28631985 28632339 -130967444 + MT2A LTR ERVL 1 476 -125 1 803 346 108 31 0 chr3 28632373 28632438 -130967345 + (GA)n Simple_repeat Simple_repeat 1 67 0 1 803 259 116 0 44 chr3 28632438 28632483 -130967300 + MT2A LTR ERVL 535 577 -7 1 803 649 192 23 8 chr3 28632501 28632632 -130967151 + RSINE1 SINE B4 1 133 -32 1 803 345 75 0 0 chr3 28632633 28632686 -130967097 + (CA)n Simple_repeat Simple_repeat 2 54 0 1 803 246 143 20 0 chr3 28632960 28633009 -130966774 - MLT2D LTR ERVL 0 560 511 1 803 361 357 25 39 chr3 28633042 28633246 -130966537 - MT2A LTR ERVL -270 263 63 1 803 352 304 27 0 chr3 28633401 28633513 -130966270 + PB1D10 SINE Alu 1 115 -2 1 803 197 299 38 38 chr3 28633824 28633904 -130965879 + MIRm SINE MIR 81 160 -116 1 803 784 225 77 0 chr3 28634780 28634962 -130964821 - B3 SINE B2 -6 210 15 1 803 685 279 157 59 chr3 28634973 28635465 -130964318 + L1MA4 LINE L1 5345 5884 -272 1 803 22 35 0 0 chr3 28635725 28635754 -130964029 + AT_rich Low_complexity Low_complexity 1 29 0 1 803 434 187 121 67 chr3 28637368 28637517 -130962266 - B3A SINE B2 -41 157 1 1 803 183 221 157 34 chr3 28637576 28637665 -130962118 - MIRm SINE MIR -169 107 8 1 803 733 193 120 6 chr3 28637928 28638095 -130961688 + B3 SINE B2 5 190 -26 1 803 1012 233 89 80 chr3 28638398 28638860 -130960923 - RMER4A LTR ERVK 0 466 1 2 803 192 309 77 0 chr3 28639329 28639458 -130960325 + MIR SINE MIR 41 177 -85 2 803 285 51 0 0 chr3 28639857 28639896 -130959887 + (A)n Simple_repeat Simple_repeat 1 39 0 2 803 594 163 0 0 chr3 28640095 28640236 -130959547 + (TG)n Simple_repeat Simple_repeat 2 142 0 2 803 1386 239 89 38 chr3 28640304 28640382 -130959401 - RLTR11A2 LTR ERVK 0 527 442 2 803 261 0 0 0 chr3 28640382 28640411 -130959372 + (CA)n Simple_repeat Simple_repeat 1 29 0 2 803 1386 239 89 38 chr3 28640411 28640828 -130958955 - RLTR11A2 LTR ERVK -86 441 7 2 803 22 0 0 0 chr3 28641347 28641369 -130958414 + AT_rich Low_complexity Low_complexity 1 22 0 2 803 596 256 72 53 chr3 28642103 28642367 -130957416 - B4A SINE B4 -17 275 7 2 803 408 317 66 62 chr3 28642735 28643024 -130956759 + L1MC1 LINE L1 6016 6305 -28 2 803 475 236 18 28 chr3 28643062 28643171 -130956612 + B3A SINE B2 3 110 -88 2 803 399 250 123 39 chr3 28643387 28643541 -130956242 - B3A SINE B2 -5 193 27 2 803 259 184 52 13 chr3 28643710 28643787 -130955996 - RSINE1 SINE B4 -84 81 2 2 803 360 64 0 0 chr3 28644525 28644572 -130955211 + (TG)n Simple_repeat Simple_repeat 2 48 0 2 803 511 272 9 0 chr3 28644677 28644791 -130954992 + RSINE1 SINE B4 16 130 -35 2 803 27 0 0 0 chr3 28645059 28645086 -130954697 + AT_rich Low_complexity Low_complexity 1 27 0 2 803 769 309 47 25 chr3 28645448 28645767 -130954016 + Lx8 LINE L1 6625 6950 -523 2 803 307 314 79 24 chr3 28645839 28646093 -130953690 - L1MC4 LINE L1 -421 7621 7354 2 803 41 21 0 0 chr3 28646788 28646836 -130952947 + AT_rich Low_complexity Low_complexity 1 48 0 2 803 256 278 66 11 chr3 28647002 28647093 -130952690 + B3A SINE B2 80 175 -23 2 803 348 263 63 0 chr3 28647096 28647252 -130952531 + B3 SINE B2 1 212 -4 2 803 1266 103 0 0 chr3 28647293 28647468 -130952315 + B2_Mm2 SINE B2 2 176 -19 2 803 3836 122 138 64 chr3 28647531 28648468 -130951315 + RLTR25A LTR ERVK 1 1028 0 2 803 489 288 124 17 chr3 28648488 28648898 -130950885 - L1M5 LINE L1 -1370 4776 4323 2 803 342 67 0 0 chr3 28648924 28648969 -130950814 + (TG)n Simple_repeat Simple_repeat 2 46 0 2 803 471 259 19 89 chr3 28648977 28649134 -130950649 - RSINE1 SINE B4 -17 148 3 2 803 248 273 121 94 chr3 28649295 28649732 -130950051 - L1M5 LINE L1 -1970 4176 3728 2 803 469 323 162 21 chr3 28649845 28650085 -130949698 - MLT2B2 LTR ERVL -183 332 59 2 803 391 299 125 30 chr3 28650538 28651002 -130948781 - L1_Rod LINE L1 -942 5201 4685 2 803 590 288 89 109 chr3 28651121 28651501 -130948282 + L1MA4 LINE L1 5167 5608 -692 2 803 439 256 0 33 chr3 28651501 28651622 -130948161 + PB1D9 SINE Alu 3 119 -1 2 803 590 281 88 112 chr3 28651622 28651932 -130947851 + L1MA4 LINE L1 5570 5891 -409 2 803 2970 140 249 2 chr3 28652018 28652597 -130947186 + Lx2B LINE L1 6277 6998 -2 2 803 930 240 56 15 chr3 28652851 28653118 -130946665 + MTD LTR MaLR 1 278 -141 2 803 1084 163 54 33 chr3 28653216 28653457 -130946326 - MTB_Mm LTR MaLR -77 330 85 2 803 288 73 0 0 chr3 28653491 28653505 -130946278 + (TA)n Simple_repeat Simple_repeat 2 15 0 2 803 405 0 0 0 chr3 28653505 28653550 -130946233 + (CA)n Simple_repeat Simple_repeat 2 46 0 2 803 288 73 0 0 chr3 28653550 28653576 -130946207 + (TA)n Simple_repeat Simple_repeat 2 27 0 2 803 453 292 56 0 chr3 28655800 28655944 -130943839 + B3A SINE B2 3 154 -44 2 803 192 125 0 0 chr3 28655945 28655977 -130943806 + (CA)n Simple_repeat Simple_repeat 2 33 0 2 803 412 299 24 72 chr3 28656033 28656325 -130943458 - L1M3c LINE L1 -4908 1233 956 2 803 720 312 9 0 chr3 28656337 28656558 -130943225 + Lx9 LINE L1 6605 6827 -817 2 803 384 224 0 0 chr3 28656566 28656651 -130943132 + L1M5 LINE L1 4490 4574 -1572 2 803 519 286 0 7 chr3 28656704 28656845 -130942938 + Lx9 LINE L1 6814 6953 -691 2 803 327 281 57 8 chr3 28656838 28656960 -130942823 + L1ME1 LINE L1 4446 4573 -1573 2 803 278 169 23 35 chr3 28657073 28657159 -130942624 + GA-rich Low_complexity Low_complexity 1 85 0 2 803 269 294 79 11 chr3 28657172 28657361 -130942422 + L1ME1 LINE L1 4799 5000 -1140 2 803 216 0 0 0 chr3 28657367 28657391 -130942392 + (GGGA)n Simple_repeat Simple_repeat 3 26 0 2 803 532 287 51 29 chr3 28657509 28657713 -130942070 + B3A SINE B2 9 215 -1 2 803 865 161 0 0 chr3 28657713 28657850 -130941933 + B1_Mus1 SINE Alu 1 137 -11 2 803 214 330 0 107 chr3 28657854 28657966 -130941817 + B1F SINE Alu 42 141 -8 2 803 234 348 11 0 chr3 28658091 28658180 -130941603 + L1MD LINE L1 5048 5137 -1009 2 803 743 266 122 44 chr3 28658180 28658451 -130941332 + B4 SINE B4 1 292 0 2 803 239 282 25 25 chr3 28658519 28658599 -130941184 + ID4 SINE ID 2 81 -2 2 803 1736 178 79 17 chr3 28658833 28659215 -130940568 - MTD LTR MaLR -23 396 9 2 803 183 42 0 0 chr3 28659237 28659261 -130940522 + (A)n Simple_repeat Simple_repeat 1 24 0 2 803 596 290 131 33 chr3 28659369 28659758 -130940025 + L1ME1 LINE L1 5615 6041 -138 2 803 505 264 33 0 chr3 28659999 28660120 -130939663 + L1MC4a LINE L1 6391 6515 -1367 2 803 324 343 104 56 chr3 28660403 28660690 -130939093 + MER68 LTR ERVL 157 457 -106 2 803 7900 50 7 3 chr3 28660710 28661888 -130937895 - L1Md_F2 LINE L1 -11 6571 5387 2 803 338 239 202 25 chr3 28661956 28662119 -130937664 + L1MC4a LINE L1 6656 6847 -1035 2 803 577 142 9 9 chr3 28662142 28662256 -130937527 + GA-rich Low_complexity Low_complexity 4 117 0 2 803 198 0 0 0 chr3 28662430 28662452 -130937331 + (T)n Simple_repeat Simple_repeat 1 22 0 2 803 374 203 101 0 chr3 28664353 28664422 -130935361 + RSINE1 SINE B4 4 79 -86 2 803 242 333 106 11 chr3 28664422 28664447 -130935336 + B3A SINE B2 3 105 -93 2 803 1485 231 102 107 chr3 28664507 28665201 -130934582 - Lx7 LINE L1 0 7696 7006 2 803 862 168 104 126 chr3 28665284 28665515 -130934268 - URR1A DNA MER1_type 0 226 1 2 803 271 249 76 0 chr3 28665534 28665664 -130934119 - L1MDa LINE L1 -4461 2172 2030 2 803 428 202 85 19 chr3 28665889 28665995 -130933788 - B4 SINE B4 -2 290 178 2 803 231 181 52 31 chr3 28666424 28666521 -130933262 + (TA)n Simple_repeat Simple_repeat 1 99 0 2 803 1944 148 17 139 chr3 28666612 28667028 -130932755 + RMER19B LTR ERVK 1 365 -537 2 803 423 0 0 0 chr3 28667906 28667953 -130931830 + (TC)n Simple_repeat Simple_repeat 2 48 0 2 803 330 26 0 0 chr3 28667953 28667991 -130931792 + (TG)n Simple_repeat Simple_repeat 2 40 0 2 803 1037 161 171 5 chr3 28668105 28668298 -130931485 + URR1B DNA MER1_type 1 225 0 2 803 879 191 5 31 chr3 28668728 28668922 -130930861 + Lx5 LINE L1 2371 2559 -3318 2 803 15110 146 56 85 chr3 28668922 28669053 -130930730 + Lx5 LINE L1 2757 2897 -2980 2 803 1086 82 0 0 chr3 28669053 28669188 -130930595 + B1_Mus1 SINE Alu 2 136 -12 2 803 417 39 0 0 chr3 28669189 28669240 -130930543 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 2 803 15110 146 56 85 chr3 28669240 28669345 -130930438 + Lx5 LINE L1 2898 2994 -2883 2 803 3443 60 0 5 chr3 28669345 28669747 -130930036 - MTB LTR MaLR 0 400 1 2 803 15110 146 56 85 chr3 28669747 28670383 -130929400 + Lx5 LINE L1 2995 3726 -2151 2 803 1222 68 0 0 chr3 28670383 28670529 -130929254 + B1_Mm SINE Alu 2 147 0 2 803 15110 146 56 85 chr3 28670529 28671944 -130927839 + Lx5 LINE L1 3727 5102 -774 2 803 1133 108 0 0 chr3 28671944 28672101 -130927682 + B2_Mm2 SINE B2 1 157 -38 2 803 396 0 0 0 chr3 28672102 28672146 -130927637 + (TAAA)n Simple_repeat Simple_repeat 2 45 0 2 803 15110 204 71 95 chr3 28672146 28674090 -130925693 + Lx5 LINE L1 5104 7030 -20 2 803 216 0 0 0 chr3 28674090 28674114 -130925669 + (TTAA)n Simple_repeat Simple_repeat 3 26 0 2 803 3361 241 80 101 chr3 28674114 28674135 -130925648 + Lx5 LINE L1 7031 7050 0 2 803 804 245 265 3 chr3 28674213 28674496 -130925287 + ORR1D1 LTR MaLR 1 357 -13 2 803 1759 213 95 5 chr3 28674567 28674935 -130924848 + MTD LTR MaLR 1 401 -18 2 803 3277 204 213 50 chr3 28674935 28675723 -130924060 + MTD-int LTR MaLR 1 928 -330 2 803 369 0 0 0 chr3 28675723 28675764 -130924019 + (TTTG)n Simple_repeat Simple_repeat 2 42 0 2 803 3277 204 213 50 chr3 28675764 28676055 -130923728 + MTD-int LTR MaLR 929 1256 -2 2 803 1891 185 69 71 chr3 28676056 28676117 -130923666 + MTD LTR MaLR 1 50 -369 2 803 1197 95 0 0 chr3 28676117 28676265 -130923518 - B1_Mus1 SINE Alu 0 148 1 2 803 1891 185 69 71 chr3 28676265 28676623 -130923160 + MTD LTR MaLR 51 419 0 2 803 687 306 80 40 chr3 28677266 28677593 -130922190 - ORR1E LTR MaLR -12 347 8 2 803 587 239 62 70 chr3 28677686 28677929 -130921854 + MER33 DNA MER1_type 1 241 -83 2 803 310 57 19 19 chr3 28678125 28678179 -130921604 + (TAAA)n Simple_repeat Simple_repeat 2 55 0 2 803 798 274 108 103 chr3 28678271 28678735 -130921048 - MER82 DNA MER2_type -139 514 49 2 803 201 108 0 0 chr3 28680178 28680215 -130919568 + (CGGGG)n Simple_repeat Simple_repeat 1 37 0 2 803 526 319 49 0 chr3 28681942 28682105 -130917678 - ID_B1 SINE B4 0 224 54 2 803 264 265 131 74 chr3 28682917 28683092 -130916691 + MIRb SINE MIR 2 186 -82 2 803 22 0 0 0 chr3 28683368 28683390 -130916393 + AT_rich Low_complexity Low_complexity 1 22 0 2 803 23 0 0 0 chr3 28683691 28683714 -130916069 + AT_rich Low_complexity Low_complexity 1 23 0 2 803 297 128 0 0 chr3 28683901 28683948 -130915835 + (TG)n Simple_repeat Simple_repeat 2 48 0 2 803 405 262 142 0 chr3 28684112 28684253 -130915530 - RSINE1 SINE B4 -3 162 2 2 803 291 274 72 5 chr3 28684674 28684835 -130914948 - ERVL-E-int LTR ERVL -964 4521 4344 2 803 352 319 72 14 chr3 28685315 28685522 -130914261 - ERVL-E-int LTR ERVL -2134 3533 3315 2 803 887 130 31 0 chr3 28686222 28686445 -130913338 + (TAGA)n Simple_repeat Simple_repeat 1 230 0 2 803 1085 263 68 9 chr3 28686473 28686799 -130912984 - Lx8 LINE L1 -160 7313 6969 2 803 459 245 37 19 chr3 28686820 28686928 -130912855 - PB1D10 SINE Alu -1 116 7 2 803 419 212 61 0 chr3 28686936 28687035 -130912748 - L1MC5 LINE L1 -158 7803 7699 2 803 895 53 0 0 chr3 28687511 28687625 -130912158 + B1_Mus2 SINE Alu 27 140 -7 2 803 615 123 98 15 chr3 28687667 28687800 -130911983 - B1_Mur3 SINE Alu 0 149 5 2 803 465 286 76 0 chr3 28688160 28688279 -130911504 - RSINE1 SINE B4 -36 129 2 2 803 524 143 71 0 chr3 28688746 28688844 -130910939 + RLTR31_Mur LTR ERVK 87 191 -362 2 803 5619 199 126 31 chr3 28688844 28690268 -130909515 + RMER3D-int LTR ERVK 1283 2841 -1 2 803 1761 138 68 12 chr3 28690269 28690593 -130909190 + RLTR31_Mur LTR ERVK 1 342 -211 2 803 560 259 161 34 chr3 28690593 28690885 -130908898 + L1MC4 LINE L1 7313 7641 -401 3 803 288 274 14 0 chr3 28691255 28691328 -130908455 + B3 SINE B2 1 74 -142 3 803 249 359 11 0 chr3 28691529 28691621 -130908162 + Lx8 LINE L1 7174 7266 -207 3 803 269 269 15 0 chr3 28691622 28691689 -130908094 + RMER15 LTR ERVL 404 471 -104 3 803 544 234 6 6 chr3 28691779 28691942 -130907841 + (TA)n Simple_repeat Simple_repeat 1 163 0 3 803 434 212 0 75 chr3 28692347 28692454 -130907329 - PB1D9 SINE Alu -1 119 21 3 803 423 56 0 0 chr3 28692756 28692810 -130906973 + (TG)n Simple_repeat Simple_repeat 1 54 0 3 803 218 56 28 0 chr3 28696311 28696347 -130903436 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 3 803 356 307 81 62 chr3 28696780 28696940 -130902843 - Charlie22a DNA MER1_type -327 164 2 3 803 424 190 0 12 chr3 28698814 28698894 -130900889 + PB1D10 SINE Alu 26 104 -13 3 803 562 204 18 18 chr3 28699267 28699377 -130900406 + B1_Mur1 SINE Alu 40 149 0 3 803 432 278 129 20 chr3 28699420 28699567 -130900216 + RSINE1 SINE B4 3 165 0 3 803 673 217 42 21 chr3 28700048 28700252 -130899531 - L1MEd LINE L1 -2561 3585 3373 3 803 225 0 0 0 chr3 28700307 28700332 -130899451 + (TTTTG)n Simple_repeat Simple_repeat 5 29 0 3 803 322 115 39 0 chr3 28700335 28700387 -130899396 - B1_Mus2 SINE Alu -20 127 74 3 803 208 227 0 0 chr3 28700659 28700703 -130899080 + CT-rich Low_complexity Low_complexity 1 44 0 3 803 259 309 62 0 chr3 28700898 28700979 -130898804 - PB1 SINE Alu -15 112 27 3 803 311 302 197 52 chr3 28701168 28701437 -130898346 - L1MEd LINE L1 -5237 899 592 3 803 709 223 23 0 chr3 28701757 28701887 -130897896 + B1_Mur2 SINE Alu 3 135 -14 3 803 333 0 0 0 chr3 28701887 28701924 -130897859 + (GA)n Simple_repeat Simple_repeat 2 38 0 3 803 252 120 0 0 chr3 28701973 28702023 -130897760 + (A)n Simple_repeat Simple_repeat 1 50 0 3 803 1675 171 113 32 chr3 28702046 28702390 -130897393 + ORR1D1 LTR MaLR 3 374 0 3 803 5580 76 47 14 chr3 28702606 28702728 -130897055 - Lx3_Mus LINE L1 0 7009 6868 3 803 201 39 0 0 chr3 28702728 28702754 -130897029 + (CCCCCA)n Simple_repeat Simple_repeat 5 30 0 3 803 5580 76 47 14 chr3 28702754 28703391 -130896392 - Lx3_Mus LINE L1 -142 6867 6226 3 804 485 252 30 45 chr3 28707577 28707710 -130892073 + ID_B1 SINE B4 87 217 -7 3 804 306 276 161 9 chr3 28707983 28708206 -130891577 - L2a LINE L2 -150 3276 3020 3 804 1323 65 23 6 chr3 28708563 28708734 -130891049 + L1_Mus1 LINE L1 6394 6567 0 3 804 858 303 168 15 chr3 28709369 28709412 -130890371 - MT2A LTR ERVL 0 533 490 3 804 285 100 0 0 chr3 28709412 28709462 -130890321 + (TA)n Simple_repeat Simple_repeat 2 51 0 3 804 858 303 168 15 chr3 28709462 28709817 -130889966 - MT2A LTR ERVL -44 489 76 3 804 954 160 0 32 chr3 28709819 28709974 -130889809 + B1_Mur4 SINE Alu 1 150 0 3 804 325 328 97 36 chr3 28710148 28710395 -130889388 - MER90 LTR ERV1 -313 262 1 3 804 214 182 0 0 chr3 28710427 28710471 -130889312 + A-rich Low_complexity Low_complexity 1 44 0 3 804 427 285 56 0 chr3 28710706 28710850 -130888933 + L1MD LINE L1 4639 4790 -1356 3 804 324 161 28 33 chr3 28710873 28711053 -130888730 + (TA)n Simple_repeat Simple_repeat 1 179 0 3 804 252 0 0 0 chr3 28711188 28711216 -130888567 + (TG)n Simple_repeat Simple_repeat 2 29 0 3 804 364 272 95 17 chr3 28711222 28711264 -130888519 - B4A SINE B4 -19 273 234 3 804 868 222 84 20 chr3 28711264 28711466 -130888317 - B3 SINE B2 -1 215 1 3 804 364 272 97 24 chr3 28711466 28711552 -130888231 - B4A SINE B4 -59 233 140 3 804 180 111 0 0 chr3 28712198 28712225 -130887558 + (TA)n Simple_repeat Simple_repeat 1 27 0 3 804 746 50 10 0 chr3 28712377 28712476 -130887307 + (TATATG)n Simple_repeat Simple_repeat 2 101 0 3 804 28 48 0 0 chr3 28712648 28712690 -130887093 + AT_rich Low_complexity Low_complexity 1 42 0 3 804 773 194 0 6 chr3 28712937 28713103 -130886680 + CT-rich Low_complexity Low_complexity 2 166 0 3 804 252 0 0 0 chr3 28714208 28714236 -130885547 + (GA)n Simple_repeat Simple_repeat 2 29 0 3 804 305 303 124 37 chr3 28714315 28714613 -130885170 - Lx8 LINE L1 -10 7463 7140 3 804 1948 126 28 22 chr3 28714996 28715313 -130884470 - ORR1A2 LTR MaLR -8 319 1 3 804 2084 258 157 39 chr3 28715453 28716337 -130883446 + Lx8 LINE L1 6483 7471 -2 3 804 24 0 0 0 chr3 28716339 28716363 -130883420 + AT_rich Low_complexity Low_complexity 1 24 0 3 804 279 0 0 0 chr3 28716644 28716675 -130883108 + (TTA)n Simple_repeat Simple_repeat 1 31 0 3 804 231 93 161 36 chr3 28716890 28716946 -130882837 + B3 SINE B2 153 215 -1 3 804 215 178 22 0 chr3 28717151 28717196 -130882587 - B4 SINE B4 -245 47 2 3 804 768 273 84 68 chr3 28717197 28717507 -130882276 - MTEa LTR MaLR -64 315 1 3 804 586 267 158 0 chr3 28717562 28717727 -130882056 - B3 SINE B2 -25 191 1 3 804 1417 342 111 66 chr3 28717727 28718050 -130881733 - MTEa-int LTR MaLR -26 1554 1201 3 804 3649 28 2 0 chr3 28718050 28718444 -130881339 - MTA_Mm LTR MaLR -1 395 1 3 804 1417 342 111 66 chr3 28718444 28719084 -130880699 - MTEa-int LTR MaLR -380 1200 548 3 804 839 225 31 6 chr3 28719086 28719247 -130880536 + B3A SINE B2 1 165 -33 3 804 297 75 0 0 chr3 28719265 28719305 -130880478 + (CA)n Simple_repeat Simple_repeat 1 40 0 3 804 566 337 117 35 chr3 28719354 28719815 -130879968 - MTEa-int LTR MaLR -1081 499 1 3 804 539 303 106 75 chr3 28719834 28720183 -130879600 - MTEa LTR MaLR -19 360 1 3 804 245 109 22 0 chr3 28720294 28720340 -130879443 + (CA)n Simple_repeat Simple_repeat 2 48 0 3 804 266 289 85 15 chr3 28720381 28720511 -130879272 - L1M5 LINE L1 -287 5837 5696 3 804 5655 210 39 20 chr3 28721173 28722297 -130877486 - Lx6 LINE L1 0 7460 6316 3 804 1693 252 29 36 chr3 28722300 28722777 -130877006 - RMER19C LTR ERVK 0 611 138 3 804 997 266 32 69 chr3 28723910 28724304 -130875479 - MTE2a LTR MaLR -9 410 25 3 804 1088 228 5 9 chr3 28724624 28724837 -130874946 + B3 SINE B2 5 216 0 3 804 986 174 60 20 chr3 28725189 28725388 -130874395 - B3 SINE B2 -1 215 9 3 804 705 209 7 33 chr3 28725597 28725750 -130874033 - B1_Mur2 SINE Alu 0 149 1 3 804 279 212 605 0 chr3 28725759 28725881 -130873902 - B3 SINE B2 -9 207 12 3 804 21 0 0 0 chr3 28726224 28726245 -130873538 + AT_rich Low_complexity Low_complexity 1 21 0 3 804 701 210 35 21 chr3 28726518 28726659 -130873124 - B1_Mur1 SINE Alu -2 147 5 3 804 1688 132 7 2 chr3 28726900 28727208 -130872575 - ORR1A4 LTR MaLR -8 338 36 3 804 331 324 9 9 chr3 28727225 28727331 -130872452 + PB1 SINE Alu 3 108 -19 3 804 587 218 15 22 chr3 28728527 28728663 -130871120 + ID_B1 SINE B4 88 222 -2 3 804 367 224 0 0 chr3 28728781 28728857 -130870926 + B1_Mur3 SINE Alu 1 76 -73 3 804 361 208 125 0 chr3 28729431 28729551 -130870232 + MER2 DNA MER2_type 100 234 -111 3 804 1255 34 0 0 chr3 28729851 28729998 -130869785 - B1_Mm SINE Alu 0 147 1 3 804 430 232 10 99 chr3 28730268 28730383 -130869400 - L1MA5 LINE L1 -1 6299 6196 3 804 417 39 0 0 chr3 28730383 28730434 -130869349 + (TTTC)n Simple_repeat Simple_repeat 2 52 0 3 804 1088 76 0 20 chr3 28730436 28730584 -130869199 - B1_Mus2 SINE Alu -1 146 2 3 804 430 232 10 99 chr3 28730584 28730666 -130869117 - L1MA5 LINE L1 -105 6195 6117 3 804 1481 75 27 0 chr3 28730872 28731060 -130868723 + B2_Mm2 SINE B2 2 194 -1 3 804 255 61 0 0 chr3 28731075 28731108 -130868675 + (GA)n Simple_repeat Simple_repeat 1 33 0 3 804 344 155 159 37 chr3 28731112 28731219 -130868564 + B3 SINE B2 28 147 -69 3 804 468 301 44 0 chr3 28731362 28731498 -130868285 + RSINE1 SINE B4 9 150 -15 3 804 390 42 0 0 chr3 28731510 28731558 -130868225 + (CA)n Simple_repeat Simple_repeat 2 49 0 3 804 368 155 35 23 chr3 28731593 28731679 -130868104 - Lx7 LINE L1 0 7696 7610 3 804 243 263 21 114 chr3 28731716 28731909 -130867874 + (CCCA)n Simple_repeat Simple_repeat 2 176 0 3 804 2026 266 31 49 chr3 28731968 28732616 -130867167 - Lx7 LINE L1 -206 7490 6855 3 804 291 104 0 0 chr3 28733367 28733415 -130866368 + (CA)n Simple_repeat Simple_repeat 2 49 0 3 804 3970 68 0 66 chr3 28733901 28734449 -130865334 - RLTR1B LTR ERV1 0 512 1 3 804 991 139 171 37 chr3 28735008 28735225 -130864558 - RMER6B LTR ERVK -8 453 208 3 804 289 280 206 61 chr3 28735397 28735625 -130864158 + L1MC1 LINE L1 5841 6101 -232 3 804 884 241 145 43 chr3 28735627 28736000 -130863783 - MTD LTR MaLR -2 417 7 3 804 2986 83 10 12 chr3 28736002 28736406 -130863377 + RLTR9D LTR ERVK 1 403 0 3 804 430 289 88 0 chr3 28736418 28736622 -130863161 + L1MC1 LINE L1 6099 6320 -13 3 804 570 264 54 19 chr3 28736695 28736900 -130862883 - B3 SINE B2 -2 214 3 3 804 462 288 29 7 chr3 28736942 28737082 -130862701 - B1F2 SINE Alu 0 149 7 3 804 418 68 55 0 chr3 28737535 28737608 -130862175 + (TCTCTG)n Simple_repeat Simple_repeat 2 78 0 3 804 847 182 14 0 chr3 28737613 28737761 -130862022 - B1_Mur4 SINE Alu 0 150 1 3 804 220 120 20 20 chr3 28737836 28737887 -130861896 + (TTTA)n Simple_repeat Simple_repeat 2 52 0 3 804 686 276 6 24 chr3 28737896 28738063 -130861720 - RSINE1 SINE B4 0 165 2 3 804 226 311 32 48 chr3 28738322 28738447 -130861336 + Charlie4z DNA MER1_type 39 161 -6 3 804 24 0 0 0 chr3 28738478 28738502 -130861281 + AT_rich Low_complexity Low_complexity 1 24 0 3 804 861 201 111 0 chr3 28738626 28738815 -130860968 + URR1B DNA MER1_type 16 225 0 3 804 1013 238 209 14 chr3 28738825 28739170 -130860613 + MTD LTR MaLR 6 417 -2 3 804 286 180 0 32 chr3 28740300 28740363 -130859420 + MER5A1 DNA MER1_type 56 116 -50 3 804 393 58 0 0 chr3 28740370 28740422 -130859361 + (TG)n Simple_repeat Simple_repeat 2 53 0 3 804 450 53 0 0 chr3 28740538 28740595 -130859188 + (TG)n Simple_repeat Simple_repeat 1 57 0 3 804 594 263 116 6 chr3 28740659 28740831 -130858952 + ID_B1 SINE B4 6 196 -28 4 804 228 330 156 38 chr3 28741156 28741367 -130858416 - MER74A LTR ERVL -77 481 246 4 804 374 172 23 8 chr3 28741615 28741744 -130858039 + (CA)n Simple_repeat Simple_repeat 2 132 0 4 804 3712 131 25 27 chr3 28741778 28742407 -130857376 + RLTR5_Mm LTR ERV1 1 628 0 4 804 1087 261 114 26 chr3 28742499 28742841 -130856942 + MTEa LTR MaLR 2 373 -6 4 804 2906 103 45 2 chr3 28743115 28743533 -130856250 + Lx2 LINE L1 6208 6643 -354 4 804 1330 108 14 18 chr3 28743533 28743751 -130856032 + Lx2 LINE L1 6775 6991 -6 4 804 447 277 29 14 chr3 28744114 28744253 -130855530 + B1F SINE Alu 1 141 -8 4 804 250 200 17 52 chr3 28744270 28744328 -130855455 + tRNA-Ala-GCY_ tRNA tRNA 2 57 -18 4 804 633 283 32 60 chr3 28744709 28744991 -130854792 + B4A SINE B4 1 274 -18 4 804 254 311 81 45 chr3 28746536 28746577 -130853206 - L1ME4a LINE L1 -201 5923 5884 4 804 759 282 83 23 chr3 28746577 28746842 -130852941 - B4A SINE B4 -10 282 2 4 804 254 311 81 45 chr3 28746842 28747022 -130852761 - L1ME4a LINE L1 -241 5883 5694 4 804 267 151 0 70 chr3 28747235 28747263 -130852520 + polypyrimidine Low_complexity Low_complexity 30 55 0 4 804 1247 84 6 0 chr3 28747263 28747441 -130852342 + (TTTC)n Simple_repeat Simple_repeat 1 179 0 4 804 690 194 9 22 chr3 28747441 28747598 -130852185 + polypyrimidine Low_complexity Low_complexity 1 155 0 4 804 1021 133 0 16 chr3 28747598 28747781 -130852002 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 4 804 690 203 11 11 chr3 28747781 28747830 -130851953 + polypyrimidine Low_complexity Low_complexity 2 50 0 4 804 288 212 0 0 chr3 28747838 28747904 -130851879 + CT-rich Low_complexity Low_complexity 3 68 0 4 804 201 180 0 0 chr3 28748142 28748192 -130851591 + (TCTG)n Simple_repeat Simple_repeat 3 52 0 4 804 7450 62 7 6 chr3 28748937 28749894 -130849889 - RLTR13A2 LTR ERVK 0 958 1 4 804 3083 211 40 53 chr3 28750023 28750868 -130848915 - RMER16-int LTR ERVK -31 2811 1978 4 804 4574 50 9 14 chr3 28750870 28751436 -130848347 - LTRIS2 LTR ERV1 -1 563 1 4 804 825 242 31 4 chr3 28751437 28751665 -130848118 - MuRRS4-int LTR ERV1 -42 5021 4788 4 804 8166 154 49 41 chr3 28751656 28754841 -130844942 - MuRRS4-int LTR ERV1 -792 4271 760 4 804 4796 136 36 24 chr3 28754832 28755738 -130844045 - RMER16-int LTR ERVK -3962 1444 141 4 804 4186 66 38 13 chr3 28756398 28756948 -130842835 - LTRIS2 LTR ERV1 0 564 1 4 804 3864 188 38 16 chr3 28757021 28757951 -130841832 - RMER3D-int LTR ERVK -987 1855 404 4 804 383 211 0 59 chr3 28758009 28758110 -130841673 - RMER3D-int LTR ERVK -2116 726 632 4 804 295 301 63 31 chr3 28758541 28758668 -130841115 + RLTR41 LTR ERV1 268 398 -48 4 804 495 242 116 63 chr3 28758710 28758917 -130840866 - RMER3D-int LTR ERVK -2599 243 26 4 804 244 125 0 0 chr3 28758944 28758984 -130840799 - RLTR31A_Mm LTR ERVK 0 584 545 4 804 1867 198 20 11 chr3 28759115 28759567 -130840216 - RLTR31A_Mm LTR ERVK -101 460 5 4 804 243 0 0 0 chr3 28759918 28759945 -130839838 + (TA)n Simple_repeat Simple_repeat 2 28 0 4 804 994 66 7 0 chr3 28759947 28760083 -130839700 - B1_Mm SINE Alu -5 142 6 4 804 25 31 0 0 chr3 28761464 28761496 -130838287 + AT_rich Low_complexity Low_complexity 1 32 0 4 804 2353 96 22 0 chr3 28761626 28761950 -130837833 + L1_Mus3 LINE L1 5802 6132 -506 4 804 186 43 0 0 chr3 28762725 28762748 -130837035 + (TTA)n Simple_repeat Simple_repeat 1 23 0 4 804 2033 244 61 6 chr3 28762749 28763273 -130836510 - Lx4B LINE L1 -5 7053 6501 4 804 606 228 158 49 chr3 28763558 28763761 -130836022 - URR1A DNA MER1_type 0 226 2 4 804 4225 153 39 36 chr3 28764017 28764298 -130835485 + L1Md_T LINE L1 1805 2072 -3805 4 804 294 29 0 0 chr3 28764298 28764333 -130835450 + (CCA)n Simple_repeat Simple_repeat 1 35 0 4 804 4225 169 30 28 chr3 28764333 28765725 -130834058 + L1Md_T LINE L1 2073 3778 -2099 4 804 36071 36 0 0 chr3 28765730 28771115 -130828668 + L1Md_T LINE L1 108 5589 -297 4 804 9110 8 0 0 chr3 28771115 28772111 -130827672 + L1Md_T LINE L1 5590 6585 0 4 804 2417 172 57 110 chr3 28772214 28772502 -130827281 + L1Md_T LINE L1 5092 5362 -515 4 804 6985 156 21 3 chr3 28772502 28773704 -130826079 + Lx3A LINE L1 5750 6972 -9 4 804 2417 163 52 96 chr3 28773704 28774058 -130825725 + L1Md_T LINE L1 5363 5707 -875 4 804 1167 117 0 0 chr3 28774078 28774258 -130825525 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 4 804 1961 92 108 7 chr3 28774260 28774556 -130825227 + IAPLTR3 LTR ERVK 1 326 0 4 804 33540 90 14 7 chr3 28774556 28782094 -130817689 + IAPLTR3-int LTR ERVK 1 7240 -273 4 804 2297 86 3 33 chr3 28782094 28782430 -130817353 + IAPLTR3 LTR ERVK 1 326 0 4 804 210 37 0 0 chr3 28782431 28782458 -130817325 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 4 804 628 135 12 0 chr3 28782489 28782612 -130817171 + Lx4A LINE L1 5711 5839 -1219 4 804 4079 35 14 2 chr3 28782612 28783099 -130816684 + MT2_Mm LTR ERVL 1 493 0 4 804 44136 25 9 0 chr3 28783099 28788425 -130811358 + MERVL-int LTR ERVL 1 5371 -114 4 804 371 111 26 53 chr3 28788425 28788501 -130811282 + ORR1A3-int LTR MaLR 567 640 -1323 4 804 291 26 0 0 chr3 28788501 28788539 -130811244 + MERVL-int LTR ERVL 5448 5485 0 4 804 4127 33 12 2 chr3 28788539 28789027 -130810756 + MT2_Mm LTR ERVL 1 493 0 4 804 2111 201 45 0 chr3 28789027 28789514 -130810269 + Lx4A LINE L1 5835 6343 -715 4 804 1331 190 35 35 chr3 28789529 28789818 -130809965 + Lx4A LINE L1 6638 6926 -132 4 804 681 274 183 7 chr3 28790599 28790900 -130808883 + Lx6 LINE L1 6997 7350 -110 4 804 324 0 0 0 chr3 28790917 28790953 -130808830 + (TG)n Simple_repeat Simple_repeat 2 37 0 4 804 1132 41 40 12 chr3 28791118 28791291 -130808492 + (TTTC)n Simple_repeat Simple_repeat 1 178 0 4 804 285 75 0 0 chr3 28791293 28791333 -130808450 + (TC)n Simple_repeat Simple_repeat 1 40 0 4 804 28 0 0 0 chr3 28792035 28792063 -130807720 + AT_rich Low_complexity Low_complexity 1 28 0 4 804 235 258 97 0 chr3 28793501 28793563 -130806220 - RMER10A LTR ERVL -54 388 321 4 804 235 329 41 0 chr3 28794955 28795028 -130804755 + B4A SINE B4 86 161 -131 4 804 228 421 0 0 chr3 28795028 28795069 -130804714 + PB1D10 SINE Alu 1 114 -3 4 804 276 30 0 0 chr3 28796054 28796087 -130803696 + (GTCTG)n Simple_repeat Simple_repeat 5 37 0 4 804 25 0 0 0 chr3 28796372 28796397 -130803386 + AT_rich Low_complexity Low_complexity 1 25 0 4 804 207 171 0 0 chr3 28796630 28796665 -130803118 + (TG)n Simple_repeat Simple_repeat 2 36 0 4 804 450 53 0 0 chr3 28796948 28797005 -130802778 + (CA)n Simple_repeat Simple_repeat 2 58 0 4 804 183 243 64 51 chr3 28797011 28797089 -130802694 + L3 LINE CR1 2736 2814 -1675 4 804 1609 204 22 16 chr3 28798373 28798696 -130801087 - RLTR20D LTR ERVK -65 503 179 4 804 2778 120 21 2 chr3 28799844 28800278 -130799505 - Lx3_Mus LINE L1 0 7009 6568 4 804 246 188 0 59 chr3 28800538 28800589 -130799194 - MT2B LTR ERVL 0 584 537 4 804 1925 120 64 13 chr3 28800590 28800903 -130798880 - MT2B LTR ERVL -255 346 18 4 804 234 174 0 0 chr3 28801429 28801475 -130798308 + (TA)n Simple_repeat Simple_repeat 2 47 0 4 804 1015 104 10 1 chr3 28802064 28802233 -130797550 + B2_Mm2 SINE B2 1 177 -16 4 804 21645 110 12 13 chr3 28802627 28807297 -130792486 - Lx3_Mus LINE L1 0 7009 2351 4 804 1296 67 22 7 chr3 28807492 28807944 -130791839 + (TTTC)n Simple_repeat Simple_repeat 1 459 0 4 804 360 0 0 0 chr3 28807945 28807985 -130791798 + (TTCC)n Simple_repeat Simple_repeat 1 40 0 4 804 605 93 0 20 chr3 28808220 28808319 -130791464 + (TCTA)n Simple_repeat Simple_repeat 4 100 0 4 804 261 175 18 0 chr3 28808409 28808466 -130791317 + CT-rich Low_complexity Low_complexity 1 58 0 4 804 488 294 8 31 chr3 28809769 28809899 -130789884 + B3 SINE B2 61 187 -29 4 804 255 341 0 12 chr3 28811174 28811257 -130788526 - PB1D10 SINE Alu -23 94 13 4 804 378 0 0 0 chr3 28812449 28812491 -130787292 + (TCTA)n Simple_repeat Simple_repeat 2 43 0 4 804 1967 85 0 161 chr3 28812603 28812982 -130786801 - L1_Mus1 LINE L1 0 6567 6250 4 804 23 33 0 0 chr3 28815264 28815294 -130784489 + AT_rich Low_complexity Low_complexity 1 30 0 4 804 22 0 0 0 chr3 28815383 28815405 -130784378 + AT_rich Low_complexity Low_complexity 1 22 0 4 804 711 279 39 48 chr3 28815597 28815932 -130783851 - Lx9 LINE L1 -450 7194 6863 4 804 6205 86 9 2 chr3 28817493 28818385 -130781398 - L1_Mus1 LINE L1 -2 6565 5689 4 804 282 147 0 0 chr3 28818765 28818833 -130780950 + (A)n Simple_repeat Simple_repeat 1 68 0 4 804 458 311 26 72 chr3 28818834 28819028 -130780755 - MTEa LTR MaLR -132 247 63 4 804 559 236 8 24 chr3 28819907 28820033 -130779750 - B1_Mur3 SINE Alu -18 131 8 4 804 579 15 0 0 chr3 28820845 28820913 -130778870 + (GA)n Simple_repeat Simple_repeat 1 68 0 4 804 216 0 0 0 chr3 28821676 28821700 -130778083 + (CA)n Simple_repeat Simple_repeat 2 25 0 4 804 510 114 0 0 chr3 28821702 28821781 -130778002 + (TA)n Simple_repeat Simple_repeat 1 79 0 4 804 231 260 27 0 chr3 28822041 28822114 -130777669 + RMER1A Other Other 933 1007 -23 4 804 5592 18 0 0 chr3 28822111 28822790 -130776993 - L1_Mm LINE L1 -1214 4669 3991 4 804 2666 67 0 0 chr3 28822792 28823137 -130776646 + L1Md_T LINE L1 6238 6582 0 4 804 261 128 0 0 chr3 28823177 28823224 -130776559 + (A)n Simple_repeat Simple_repeat 1 47 0 4 804 1074 284 86 27 chr3 28823356 28823693 -130776090 - MTD LTR MaLR -17 402 46 4 804 904 322 44 52 chr3 28823706 28824073 -130775710 - ORR1D2 LTR MaLR -4 366 3 4 804 211 268 14 14 chr3 28824787 28824859 -130774924 + (TA)n Simple_repeat Simple_repeat 2 73 0 4 804 522 370 51 78 chr3 28825974 28826346 -130773437 - MTE2b LTR MaLR -15 364 3 4 804 339 263 25 0 chr3 28826428 28826546 -130773237 - Lx9 LINE L1 -594 7050 6930 4 804 2937 39 8 0 chr3 28826572 28826929 -130772854 + L1Md_F3 LINE L1 6211 6570 -14 4 804 265 393 9 9 chr3 28827198 28827411 -130772372 + Lx9 LINE L1 6587 6799 -845 4 804 21 71 0 0 chr3 28827606 28827648 -130772135 + AT_rich Low_complexity Low_complexity 1 42 0 4 804 260 328 0 71 chr3 28827648 28827789 -130771994 + MER44D DNA MER2_type 5 135 -570 4 804 1293 210 55 20 chr3 28827949 28828393 -130771390 + L1_Mur3 LINE L1 4072 4529 -1351 4 804 345 210 133 8 chr3 28828521 28828641 -130771142 + Lx9 LINE L1 7199 7333 -311 4 804 479 277 98 25 chr3 28828676 28829043 -130770740 - L1_Mur3 LINE L1 -3659 2221 1828 4 804 2918 173 17 9 chr3 28829058 28829601 -130770182 + Lx3A LINE L1 6428 6974 -7 4 804 399 56 0 0 chr3 28829604 28829658 -130770125 + (TAA)n Simple_repeat Simple_repeat 3 56 0 4 804 2099 108 10 22 chr3 28829831 28830144 -130769639 - RLTR27 LTR ERVK 0 309 1 4 804 1394 161 0 26 chr3 28830144 28830412 -130769371 - MMERVK10C-int LTR ERVK 0 7581 7321 4 804 326 297 25 25 chr3 28830546 28830708 -130769075 - MMERVK10C-int LTR ERVK -512 7069 6908 4 804 2790 297 39 34 chr3 28830927 28832795 -130766988 - MMERVK10C-int LTR ERVK -2104 5477 3267 4 804 180 111 0 0 chr3 28832819 28832846 -130766937 + (T)n Simple_repeat Simple_repeat 1 27 0 4 804 267 274 0 62 chr3 28833036 28833149 -130766634 + T-rich Low_complexity Low_complexity 5 110 0 5 804 610 233 45 45 chr3 28833150 28833348 -130766435 - RLTR10-int LTR ERVK -1135 852 655 5 804 362 45 7 0 chr3 28833380 28833433 -130766350 - RLTR10-int LTR ERVK -7314 267 163 5 804 2100 111 10 22 chr3 28833457 28833770 -130766013 - RLTR27 LTR ERVK 0 309 1 5 804 392 263 5 40 chr3 28834162 28834288 -130765495 + PB1D10 SINE Alu 13 131 -18 5 804 566 262 74 42 chr3 28834471 28834686 -130765097 + Lx7 LINE L1 5625 5846 -1850 5 804 2616 216 18 7 chr3 28834984 28835553 -130764230 - Lx3B LINE L1 -6 6967 6393 5 804 437 164 76 9 chr3 28835553 28835658 -130764125 + L1_Mur2 LINE L1 2588 2699 -3178 5 100 1018 146 48 5 chr3 28835657 28835863 -130763920 + L1_Mur2 LINE L1 3535 3749 -2128 5 805 250 292 113 25 chr3 28836169 28836299 -130763484 + MIRc SINE MIR 31 174 -34 5 805 1212 7 0 0 chr3 28837591 28837728 -130762055 + (TCTCCC)n Simple_repeat Simple_repeat 3 139 0 5 805 406 0 37 0 chr3 28837860 28837914 -130761869 + (CAA)n Simple_repeat Simple_repeat 2 57 0 5 805 1916 177 75 22 chr3 28837927 28838342 -130761441 - RMER10A LTR ERVL -3 439 3 5 805 2001 226 29 95 chr3 28838350 28839004 -130760779 - RMER19C LTR ERVK 0 611 1 5 805 327 179 30 0 chr3 28840087 28840154 -130759629 + RMER19B LTR ERVK 692 760 -142 5 805 823 205 18 91 chr3 28841823 28842108 -130757675 - Lx5 LINE L1 -745 6305 6042 5 805 2848 163 51 10 chr3 28842118 28842657 -130757126 - L1_Mur2 LINE L1 -1827 4050 3482 5 805 188 34 0 33 chr3 28842657 28842687 -130757096 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 5 805 2848 163 51 10 chr3 28842687 28842760 -130757023 - L1_Mur2 LINE L1 -2396 3481 3413 5 805 897 270 26 37 chr3 28842888 28843315 -130756468 - Lx8 LINE L1 -1613 6083 5654 5 805 834 224 93 0 chr3 28843335 28843518 -130756265 + ORR1D1 LTR MaLR 15 214 -160 5 805 1493 257 49 112 chr3 28843523 28844316 -130755467 - Lx8 LINE L1 -245 5635 4893 5 805 272 395 66 55 chr3 28844404 28844677 -130755106 + B4A SINE B4 3 278 -14 5 805 389 95 16 0 chr3 28844719 28844782 -130755001 + (CA)n Simple_repeat Simple_repeat 1 64 0 5 805 517 242 70 0 chr3 28844797 28844925 -130754858 + B1_Mur3 SINE Alu 2 138 -11 5 805 4426 158 30 23 chr3 28844926 28845766 -130754017 + RLTR13A LTR ERVK 10 855 0 5 805 269 26 26 0 chr3 28845780 28845818 -130753965 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 5 805 2379 140 238 32 chr3 28846489 28847434 -130752349 - Lx LINE L1 -742 5912 4686 5 805 4233 116 1 0 chr3 28848197 28848869 -130750914 + L1_Mus1 LINE L1 2245 2917 -2966 5 805 2278 227 86 72 chr3 28848870 28849743 -130750040 - RLTR13D6 LTR ERVK -8 894 10 5 805 18225 103 6 15 chr3 28849752 28853424 -130746359 + L1_Mus1 LINE L1 2912 6564 -3 5 805 21 36 0 0 chr3 28853424 28853452 -130746331 + AT_rich Low_complexity Low_complexity 1 28 0 5 805 972 110 0 0 chr3 28853452 28853598 -130746185 + L1_Mus4 LINE L1 5645 5790 -846 5 805 3262 251 59 44 chr3 28853600 28854947 -130744836 - L1_Rod LINE L1 -51 5796 4429 5 805 541 233 104 21 chr3 28855079 28855272 -130744511 + Lx9 LINE L1 7306 7514 -130 5 805 565 272 105 76 chr3 28855301 28855808 -130743975 - L1_Rod LINE L1 -2318 3822 3289 5 805 1609 283 45 11 chr3 28855836 28856516 -130743267 - L1_Mur3 LINE L1 -7029 683 3 5 805 1311 272 105 55 chr3 28856536 28856666 -130743117 - L1_Rod LINE L1 -3632 2215 2048 5 805 311 96 19 0 chr3 28856666 28856718 -130743065 + (TG)n Simple_repeat Simple_repeat 2 54 0 5 805 1311 272 105 55 chr3 28856718 28857424 -130742359 - L1_Rod LINE L1 -3800 2047 1337 5 805 450 311 7 0 chr3 28857693 28857844 -130741939 + Lx7 LINE L1 7127 7278 -418 5 805 333 0 0 0 chr3 28857888 28857925 -130741858 + (TG)n Simple_repeat Simple_repeat 2 38 0 5 805 786 307 115 20 chr3 28858634 28858930 -130740853 + ORR1D2 LTR MaLR 1 324 -46 5 805 23 33 0 0 chr3 28859270 28859300 -130740483 + AT_rich Low_complexity Low_complexity 1 30 0 5 805 23 54 0 0 chr3 28859340 28859377 -130740406 + AT_rich Low_complexity Low_complexity 1 37 0 5 805 474 237 82 0 chr3 28859501 28859636 -130740147 + Lx6 LINE L1 7207 7352 -108 5 805 1702 182 55 101 chr3 28860429 28860523 -130739260 + RLTR31_Mm LTR ERVK 1 93 -468 5 805 561 30 0 0 chr3 28860523 28860590 -130739193 + (GA)n Simple_repeat Simple_repeat 2 68 0 5 805 1702 182 55 101 chr3 28860590 28861081 -130738702 + RLTR31_Mm LTR ERVK 94 559 -2 5 805 240 35 0 0 chr3 28861139 28861168 -130738615 + (CA)n Simple_repeat Simple_repeat 2 30 0 5 805 304 319 0 0 chr3 28861371 28861443 -130738340 + (CCCTAG)n Simple_repeat Simple_repeat 4 75 0 5 805 22 35 0 0 chr3 28861655 28861684 -130738099 + AT_rich Low_complexity Low_complexity 1 29 0 5 805 277 167 13 13 chr3 28861844 28861923 -130737860 + (TG)n Simple_repeat Simple_repeat 2 80 0 5 805 428 336 40 57 chr3 28861930 28862157 -130737626 - RMER15 LTR ERVL -3 572 350 5 805 2604 135 16 52 chr3 28862738 28863184 -130736599 + RLTR23 LTR ERV1 1 430 0 5 805 230 0 0 32 chr3 28863572 28863603 -130736180 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 5 805 3243 21 42 0 chr3 28863951 28864331 -130735452 + MTA_Mm LTR MaLR 1 396 0 5 805 251 301 14 0 chr3 28865693 28865766 -130734017 + ID4 SINE ID 8 81 -2 5 805 683 277 28 0 chr3 28865710 28865887 -130733896 + ID_B1 SINE B4 27 208 -16 5 805 585 42 0 0 chr3 28865897 28865969 -130733814 + (GGAA)n Simple_repeat Simple_repeat 1 72 0 5 805 490 233 148 57 chr3 28866349 28866687 -130733096 + Lx5 LINE L1 6683 7058 0 5 805 385 122 44 0 chr3 28866692 28866782 -130733001 + (CAGAGA)n Simple_repeat Simple_repeat 3 96 0 5 805 746 92 31 0 chr3 28867639 28867769 -130732014 + (TC)n Simple_repeat Simple_repeat 1 134 0 5 805 225 196 0 0 chr3 28868231 28868282 -130731501 + T-rich Low_complexity Low_complexity 1 51 0 5 805 27900 103 12 19 chr3 28868720 28871850 -130727933 - L1_Mus2 LINE L1 0 6566 3522 5 805 2895 61 0 3 chr3 28871850 28872226 -130727557 + L1Md_F2 LINE L1 6207 6581 -1 5 805 27900 130 14 31 chr3 28872226 28874986 -130724797 - L1_Mus2 LINE L1 -2362 3521 752 5 805 464 278 43 6 chr3 28874966 28875129 -130724654 - L1_Mus2 LINE L1 -5784 832 664 5 805 397 321 14 22 chr3 28875155 28875411 -130724372 - L1VL1 LINE L1 -5934 488 79 5 805 2959 120 11 60 chr3 28875415 28875966 -130723817 - L1_Mm LINE L1 -880 5003 4480 5 805 1676 202 58 75 chr3 28876011 28876516 -130723267 - MT2B LTR ERVL 0 601 1 5 805 1328 232 116 9 chr3 28876516 28876850 -130722933 - MTD LTR MaLR -32 387 18 5 805 310 240 85 39 chr3 28876863 28876993 -130722790 - L1MD LINE L1 -1919 4227 4092 5 805 249 302 18 59 chr3 28877139 28877308 -130722475 - L1MC LINE L1 -2287 3859 3698 5 805 384 234 0 0 chr3 28877326 28877420 -130722363 + (CATATA)n Simple_repeat Simple_repeat 2 95 0 5 805 41 36 0 0 chr3 28877676 28877731 -130722052 + AT_rich Low_complexity Low_complexity 1 55 0 5 805 1041 163 11 26 chr3 28877806 28878040 -130721743 + MT2B LTR ERVL 353 601 0 5 805 237 240 0 0 chr3 28878116 28878166 -130721617 + L2a LINE L2 3377 3426 0 5 805 445 221 0 44 chr3 28878233 28878314 -130721469 + B4 SINE B4 3 83 -209 5 805 237 33 0 0 chr3 28878314 28878344 -130721439 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 5 805 386 125 0 12 chr3 28878676 28878757 -130721026 + (TC)n Simple_repeat Simple_repeat 1 80 0 5 805 28699 66 16 9 chr3 28878766 28882312 -130717471 - L1Md_F2 LINE L1 -14 6568 3001 5 805 185 0 40 0 chr3 28882312 28882337 -130717446 + (TTG)n Simple_repeat Simple_repeat 2 27 0 5 805 28699 69 11 9 chr3 28882337 28883496 -130716287 - L1Md_F2 LINE L1 -2883 3000 1836 5 805 24 32 0 0 chr3 28883877 28883908 -130715875 + AT_rich Low_complexity Low_complexity 1 31 0 5 805 1357 157 170 11 chr3 28883929 28884199 -130715584 + ORR1A4 LTR MaLR 2 314 -15 5 805 300 127 0 0 chr3 28884281 28884336 -130715447 + (TG)n Simple_repeat Simple_repeat 1 55 0 5 805 649 258 27 48 chr3 28884342 28884529 -130715254 - B3A SINE B2 -15 183 1 5 805 21 36 0 0 chr3 28884714 28884742 -130715041 + AT_rich Low_complexity Low_complexity 1 28 0 5 805 278 266 188 31 chr3 28884803 28884931 -130714852 - RSINE1 SINE B4 -15 150 3 5 805 1673 26 0 0 chr3 28885182 28885375 -130714408 - B2_Mm1t SINE B2 0 193 1 5 805 234 0 0 0 chr3 28885535 28885561 -130714222 + (T)n Simple_repeat Simple_repeat 1 26 0 5 805 573 262 114 50 chr3 28886539 28886661 -130713122 - MTD LTR MaLR -149 270 132 5 805 248 0 0 30 chr3 28886661 28886694 -130713089 + (TAA)n Simple_repeat Simple_repeat 2 33 0 5 805 573 262 114 50 chr3 28886694 28886772 -130713011 - MTD LTR MaLR -288 131 57 5 805 1168 273 143 49 chr3 28886774 28887306 -130712477 - RLTR26 LTR ERVK -60 582 1 5 805 951 110 128 6 chr3 28887940 28888096 -130711687 - B2_Mm2 SINE B2 -19 176 2 5 805 212 246 45 30 chr3 28888681 28888748 -130711035 - RSINE1 SINE B4 0 165 98 5 805 462 304 122 49 chr3 28888717 28888921 -130710862 - B4 SINE B4 -18 274 56 5 805 602 268 25 76 chr3 28889192 28889390 -130710393 + B3A SINE B2 1 188 -10 5 805 307 329 54 7 chr3 28890015 28890162 -130709621 - L1MEg LINE L1 -5340 744 591 5 805 41397 17 1 6 chr3 28890163 28896347 -130703436 - L1Md_A LINE L1 0 6582 440 5 805 272 271 70 12 chr3 28896502 28896588 -130703195 - MTEb LTR MaLR -8 371 281 5 805 780 216 29 35 chr3 28896588 28896760 -130703023 - RMER20B LTR ERVK 0 627 457 5 805 1152 255 35 22 chr3 28896760 28897077 -130702706 + ORR1A4 LTR MaLR 1 321 -8 5 805 2239 160 19 84 chr3 28897084 28897561 -130702222 - RMER20B LTR ERVK -168 459 14 5 805 678 280 177 0 chr3 28897566 28897809 -130701974 - MTEb LTR MaLR -93 286 1 5 805 200 312 0 0 chr3 28898305 28898353 -130701430 + L3b LINE CR1 189 236 -246 5 805 393 117 0 0 chr3 28898867 28898927 -130700856 + (CACG)n Simple_repeat Simple_repeat 1 60 0 5 805 446 295 15 76 chr3 28899191 28899323 -130700460 + PB1 SINE Alu 3 126 -1 5 805 873 29 0 0 chr3 28900042 28900146 -130699637 + (TCTA)n Simple_repeat Simple_repeat 3 106 0 5 805 1120 243 160 63 chr3 28900372 28900754 -130699029 + MTD LTR MaLR 1 419 0 5 805 670 277 29 28 chr3 28902170 28902448 -130697335 + L1MB5 LINE L1 5872 6154 -20 5 805 238 359 131 75 chr3 28903291 28903490 -130696293 + MER77 LTR ERVL 147 356 -251 5 805 253 294 12 0 chr3 28903731 28903749 -130696034 + L1MB8 LINE L1 5828 5846 -332 5 805 2655 67 24 6 chr3 28903749 28904082 -130695701 - L1_Mus1 LINE L1 0 6567 6229 6 805 3324 75 0 0 chr3 28904082 28904498 -130695285 + L1Md_F2 LINE L1 5816 6231 -351 6 805 21 36 0 0 chr3 28905158 28905186 -130694597 + AT_rich Low_complexity Low_complexity 1 28 0 6 805 488 167 0 27 chr3 28905248 28905396 -130694387 + (TA)n Simple_repeat Simple_repeat 2 145 0 6 805 540 254 7 80 chr3 28905480 28905630 -130694153 + ID_B1 SINE B4 81 219 -5 6 805 266 288 77 51 chr3 28905632 28905749 -130694034 + PB1D7 SINE Alu 1 120 0 6 805 1590 225 90 14 chr3 28905901 28906266 -130693517 - MTD LTR MaLR -15 404 12 6 805 693 368 72 33 chr3 28906382 28906983 -130692800 - Lx8 LINE L1 -8 7465 6842 6 805 40714 23 1 8 chr3 28906977 28913172 -130686611 - L1Md_T LINE L1 -1 6581 440 6 805 1012 322 78 2 chr3 28913171 28913566 -130686217 - Lx8 LINE L1 -615 6858 6434 6 805 228 172 14 86 chr3 28913567 28913637 -130686146 - RMER17D LTR ERVK -283 606 542 6 805 2398 208 52 100 chr3 28913675 28914620 -130685163 + L1_Mus1 LINE L1 298 1232 -5384 6 805 29824 108 8 31 chr3 28914600 28917641 -130682142 + L1_Mus1 LINE L1 1393 4444 -1439 6 805 2205 40 0 0 chr3 28917641 28917890 -130681893 + L1Md_T LINE L1 6333 6581 -1 6 805 29824 89 10 18 chr3 28917890 28920120 -130679663 + L1_Mus1 LINE L1 4445 6567 0 6 805 609 287 84 76 chr3 28920149 28920518 -130679265 - RMER13A LTR ERVK -467 393 22 6 805 435 203 52 82 chr3 28920545 28920679 -130679104 - Lx9 LINE L1 -558 7086 6957 6 805 1025 295 79 17 chr3 28920682 28921099 -130678684 - L1MA5A LINE L1 -469 5828 5386 6 805 688 277 182 33 chr3 28921190 28921728 -130678055 + L1_Mur3 LINE L1 2484 3093 -2787 6 805 237 33 0 0 chr3 28921845 28921875 -130677908 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 6 805 1818 209 16 61 chr3 28922322 28922765 -130677018 - RMER20B LTR ERVK 0 627 205 6 805 180 0 0 0 chr3 28922769 28922789 -130676994 + (TTG)n Simple_repeat Simple_repeat 2 21 0 6 805 648 67 11 22 chr3 28922806 28922898 -130676885 - B1_Mus2 SINE Alu 0 147 57 6 805 3921 144 34 67 chr3 28923500 28924503 -130675280 - RLTR13D6 LTR ERVK 0 983 1 6 805 612 115 0 0 chr3 28924503 28924616 -130675167 + (TC)n Simple_repeat Simple_repeat 2 114 0 6 805 246 32 0 0 chr3 28925298 28925329 -130674454 + (TTG)n Simple_repeat Simple_repeat 2 32 0 6 805 21 57 0 0 chr3 28926596 28926631 -130673152 + AT_rich Low_complexity Low_complexity 1 35 0 6 805 230 420 27 61 chr3 28927132 28927279 -130672504 - B4A SINE B4 -44 248 107 6 805 234 0 0 0 chr3 28927299 28927325 -130672458 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 6 805 497 306 20 98 chr3 28927357 28927603 -130672180 + B4 SINE B4 3 229 -63 6 805 482 151 0 9 chr3 28927670 28927777 -130672006 + CT-rich Low_complexity Low_complexity 1 106 0 6 805 324 0 0 0 chr3 28927778 28927814 -130671969 + (CA)n Simple_repeat Simple_repeat 1 36 0 6 805 303 28 0 0 chr3 28927814 28927849 -130671934 + (GA)n Simple_repeat Simple_repeat 2 37 0 6 805 265 24 23 23 chr3 28928440 28928483 -130671300 + (TTTG)n Simple_repeat Simple_repeat 4 46 0 6 805 251 287 39 19 chr3 28930215 28930318 -130669465 + Lx9 LINE L1 7407 7511 -133 6 805 1380 97 49 0 chr3 28930482 28930667 -130669116 + B2_Mm2 SINE B2 2 195 0 6 805 214 174 0 0 chr3 28930669 28930715 -130669068 + A-rich Low_complexity Low_complexity 1 46 0 6 805 235 301 82 62 chr3 28930886 28931081 -130668702 - MER102b DNA MER1_type -30 311 113 6 805 492 290 31 15 chr3 28931316 28931512 -130668271 - L1M2 LINE L1 -1162 4981 4783 6 805 527 268 23 12 chr3 28931514 28931661 -130668122 - ID_B1 SINE B4 -62 230 86 6 805 262 321 149 59 chr3 28931770 28932025 -130667758 + B4 SINE B4 1 278 -14 6 805 364 319 105 24 chr3 28932056 28932351 -130667432 + L1M1 LINE L1 5412 5730 -573 6 805 298 264 63 0 chr3 28932687 28932789 -130666994 - PB1D10 SINE Alu 0 120 6 6 805 3580 26 13 0 chr3 28932937 28933328 -130666455 + MTA_Mm LTR MaLR 1 396 0 6 805 417 303 8 24 chr3 28934271 28934396 -130665387 + ID_B1 SINE B4 102 224 0 6 805 345 245 75 106 chr3 28935459 28935619 -130664164 + HAL1-3A_ME LINE L1 2284 2438 -420 6 805 649 129 10 0 chr3 28935674 28935775 -130664008 + Lx4A LINE L1 6721 6822 -236 6 805 413 134 9 102 chr3 28935776 28935884 -130663899 + Lx4A LINE L1 6961 7058 0 6 805 4337 61 0 7 chr3 28935990 28936537 -130663246 - L1_Mus3 LINE L1 -422 6216 5674 6 805 3025 99 26 2 chr3 28936537 28936953 -130662830 + L1_Mus3 LINE L1 6212 6637 -1 6 805 433 260 36 44 chr3 28937573 28937710 -130662073 + ID_B1 SINE B4 79 214 -10 6 805 4698 52 12 23 chr3 28937881 28938457 -130661326 - L1Md_F2 LINE L1 0 6582 6013 6 805 2004 42 4 0 chr3 28938457 28938697 -130661086 + L1Md_T LINE L1 5776 6016 -566 6 805 3100 156 203 27 chr3 28939713 28940340 -130659443 + RMER19A LTR ERVK 1 737 0 6 805 242 290 57 48 chr3 28941122 28941227 -130658556 + B4A SINE B4 187 292 0 6 805 1102 112 99 12 chr3 28942000 28942171 -130657612 + B2_Mm2 SINE B2 2 187 -8 6 805 610 284 14 0 chr3 28942319 28942460 -130657323 + RSINE1 SINE B4 4 146 -19 6 805 28 0 0 0 chr3 28943339 28943367 -130656416 + AT_rich Low_complexity Low_complexity 1 28 0 6 805 1000 161 199 46 chr3 28943651 28943847 -130655936 + URR1A DNA MER1_type 1 226 0 6 805 619 276 90 95 chr3 28944222 28944421 -130655362 - MTD LTR MaLR -33 386 172 6 805 2029 142 3 6 chr3 28944421 28944733 -130655050 + RLTR10E LTR ERVK 1 311 0 6 805 619 276 90 95 chr3 28944733 28944921 -130654862 - MTD LTR MaLR -248 171 1 6 805 270 81 0 0 chr3 28945115 28945152 -130654631 + (TA)n Simple_repeat Simple_repeat 2 38 0 6 805 211 146 49 0 chr3 28945722 28945763 -130654020 + CT-rich Low_complexity Low_complexity 2 44 0 6 805 669 25 0 0 chr3 28946163 28946242 -130653541 + (CAG)n Simple_repeat Simple_repeat 1 79 0 6 805 25 0 0 0 chr3 28946883 28946908 -130652875 + AT_rich Low_complexity Low_complexity 1 25 0 6 805 234 75 25 0 chr3 28946908 28946948 -130652835 - Lx9 LINE L1 -1 7643 7603 6 805 251 105 0 0 chr3 28947081 28947119 -130652664 + tRNA-Gly-GGA tRNA tRNA 1 38 -37 6 805 6872 207 58 40 chr3 28948334 28949896 -130649887 + Lx7 LINE L1 5741 7330 -366 6 805 228 35 0 0 chr3 28949950 28949979 -130649804 + (TG)n Simple_repeat Simple_repeat 2 30 0 6 805 392 216 102 23 chr3 28950074 28950202 -130649581 + Lx7 LINE L1 7559 7696 0 6 805 335 280 99 10 chr3 28950682 28950783 -130649000 - PB1 SINE Alu -2 125 16 6 805 8273 40 1 12 chr3 28950864 28951818 -130647965 - L1Md_F2 LINE L1 -9 6573 5630 6 805 3813 35 5 0 chr3 28951818 28952252 -130647531 - RLTR10C LTR ERVK 0 436 1 6 805 8273 51 1 9 chr3 28952252 28952783 -130647000 - L1Md_F2 LINE L1 -254 5629 5099 6 805 4643 164 55 24 chr3 28953306 28954187 -130645596 - RMER13B LTR ERVK 0 908 1 6 805 478 253 17 35 chr3 28954359 28954506 -130645277 - L1_Rod LINE L1 -841 5603 5421 6 805 205 384 50 14 chr3 28954597 28954737 -130645046 - MIR3 SINE MIR -21 187 43 6 805 3441 28 5 0 chr3 28955003 28955397 -130644386 + MTA_Mm LTR MaLR 1 396 0 6 805 318 67 0 0 chr3 28956019 28956064 -130643719 + (TG)n Simple_repeat Simple_repeat 1 45 0 6 805 405 0 0 0 chr3 28956124 28956169 -130643614 + (TATG)n Simple_repeat Simple_repeat 3 47 0 6 805 504 0 0 0 chr3 28956264 28956320 -130643463 + (TTCCC)n Simple_repeat Simple_repeat 1 56 0 6 805 959 139 6 0 chr3 28956320 28956485 -130643298 + (TTCC)n Simple_repeat Simple_repeat 4 170 0 6 805 2496 51 16 0 chr3 28956490 28956805 -130642978 - L1_Mus1 LINE L1 -1 6566 6247 6 805 479 330 27 16 chr3 28956960 28957145 -130642638 - MTD LTR MaLR -232 187 1 6 805 853 274 45 84 chr3 28957493 28957848 -130641935 - ORR1E LTR MaLR -4 355 15 6 805 314 131 33 0 chr3 28957899 28957960 -130641823 + CT-rich Low_complexity Low_complexity 4 66 0 6 805 239 324 54 0 chr3 28958042 28958116 -130641667 - L2a LINE L2 -5 3421 3344 6 805 355 253 188 108 chr3 28958525 28958866 -130640917 + RLTR9A LTR ERVK 1 368 0 6 805 426 314 59 28 chr3 28959530 28959849 -130639934 - L1MA4 LINE L1 -261 6039 5712 6 805 476 303 100 23 chr3 28959892 28960344 -130639439 - L1_Mur3 LINE L1 -388 5492 5007 6 805 345 47 0 0 chr3 28962469 28962512 -130637271 + (TG)n Simple_repeat Simple_repeat 2 44 0 6 805 28 0 0 0 chr3 28962584 28962612 -130637171 + AT_rich Low_complexity Low_complexity 1 28 0 6 805 3400 42 2 0 chr3 28962837 28963241 -130636542 + L1Md_F2 LINE L1 5181 5585 -298 6 805 8254 45 2 0 chr3 28963242 28964224 -130635559 + L1Md_F2 LINE L1 5587 6570 -12 6 805 288 0 0 0 chr3 28964447 28964479 -130635304 + (CTAA)n Simple_repeat Simple_repeat 4 35 0 6 805 315 0 0 0 chr3 28964479 28964513 -130635270 + (CA)n Simple_repeat Simple_repeat 2 36 0 6 805 330 26 0 0 chr3 28964513 28964551 -130635232 + (TA)n Simple_repeat Simple_repeat 1 39 0 6 805 3945 109 16 39 chr3 28964630 28965243 -130634540 - MT2B LTR ERVL -2 599 1 6 805 4128 209 30 20 chr3 28965273 28966349 -130633434 - RMER1B Other Other 0 1066 134 6 806 192 398 19 0 chr3 28968219 28968327 -130631456 + L2a LINE L2 2997 3106 -320 6 806 624 333 25 0 chr3 28968584 28968782 -130631001 - B4A SINE B4 -43 249 47 6 806 256 266 0 37 chr3 28968810 28968892 -130630891 - B4 SINE B4 -206 86 8 6 806 236 287 85 17 chr3 28969321 28969498 -130630285 - HAL1 LINE L1 -758 1749 1561 6 806 331 291 194 12 chr3 28969720 28969880 -130629903 + ID_B1 SINE B4 8 196 -28 6 806 295 302 0 25 chr3 28969885 28970004 -130629779 + GA-rich Low_complexity Low_complexity 1 116 0 6 806 276 286 16 63 chr3 28970026 28970153 -130629630 + CT-rich Low_complexity Low_complexity 3 123 0 6 806 2346 249 187 19 chr3 28970381 28970420 -130629363 - Lx9 LINE L1 -790 6854 6825 6 806 2364 110 80 11 chr3 28970420 28970796 -130628987 - RLTR44A LTR ERVK 0 405 4 6 806 2346 245 173 18 chr3 28970796 28971641 -130628142 - Lx9 LINE L1 -820 6824 5786 6 806 1504 213 154 7 chr3 28971645 28972094 -130627689 + Lx9 LINE L1 7130 7644 0 7 806 534 322 65 4 chr3 28972120 28972397 -130627386 - L1MB7 LINE L1 -30 6154 5861 7 806 302 45 23 0 chr3 28972409 28972453 -130627330 + (TTTA)n Simple_repeat Simple_repeat 4 48 0 7 806 1497 279 81 100 chr3 28972614 28973910 -130625873 + L1M3 LINE L1 2849 4119 -2021 7 806 447 290 87 73 chr3 28974062 28974337 -130625446 + RLTR19 LTR ERVK 228 506 0 7 806 561 286 75 24 chr3 28974338 28974711 -130625072 + L1M3 LINE L1 4119 4510 -1633 7 806 272 367 40 80 chr3 28974741 28974892 -130624891 + RSINE1 SINE B4 1 145 -20 7 806 225 65 0 0 chr3 28974898 28974929 -130624854 + (CA)n Simple_repeat Simple_repeat 2 32 0 7 806 689 326 75 31 chr3 28974987 28975373 -130624410 + L1M3 LINE L1 4584 4986 -1154 7 806 460 130 55 12 chr3 28975628 28975791 -130623992 + (CA)n Simple_repeat Simple_repeat 1 170 0 7 806 686 271 101 6 chr3 28975815 28976272 -130623511 + L1M3 LINE L1 4987 5490 -801 7 806 328 274 36 36 chr3 28976363 28976503 -130623280 + L1MB2 LINE L1 5991 6130 -41 7 806 955 183 67 60 chr3 28976500 28976767 -130623016 + Lx7 LINE L1 7428 7696 0 7 806 535 273 85 75 chr3 28978177 28978240 -130621543 - B4 SINE B4 -8 284 224 7 806 234 0 0 0 chr3 28978240 28978266 -130621517 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 7 806 535 273 85 75 chr3 28978266 28978483 -130621300 - B4 SINE B4 -69 223 1 7 806 973 111 12 6 chr3 28979463 28979626 -130620157 + (TTTC)n Simple_repeat Simple_repeat 1 164 0 7 806 423 0 0 0 chr3 28980111 28980158 -130619625 + (TC)n Simple_repeat Simple_repeat 1 47 0 7 806 22 0 0 0 chr3 28981434 28981456 -130618327 + GC_rich Low_complexity Low_complexity 1 22 0 7 806 342 0 0 0 chr3 28982300 28982338 -130617445 + (TG)n Simple_repeat Simple_repeat 2 39 0 7 806 546 16 0 0 chr3 28983306 28983369 -130616414 + (TG)n Simple_repeat Simple_repeat 2 64 0 7 806 623 212 7 0 chr3 28984274 28984425 -130615358 + CT-rich Low_complexity Low_complexity 2 153 0 7 806 403 303 7 53 chr3 28984425 28984575 -130615208 - ID_B1 SINE B4 0 224 82 7 806 270 217 0 48 chr3 28984899 28984962 -130614821 - PB1D10 SINE Alu -44 73 14 7 806 1488 56 61 0 chr3 28985988 28986185 -130613598 - L1_Mus2 LINE L1 0 6566 6358 7 806 1641 65 0 0 chr3 28986186 28986386 -130613397 + L1_Mus2 LINE L1 6111 6310 -256 7 806 209 308 0 15 chr3 28986737 28986803 -130612980 + CT-rich Low_complexity Low_complexity 3 67 0 7 806 41953 6 0 0 chr3 28986805 28993338 -130606445 - L1Md_A LINE L1 0 6582 50 7 806 807 310 19 55 chr3 28993683 28994183 -130605600 - Lx7 LINE L1 -1678 6018 5510 7 806 2051 144 63 20 chr3 28994194 28994590 -130605193 + MTC LTR MaLR 1 413 -8 7 806 766 316 50 57 chr3 28994643 28995308 -130604475 - Lx7 LINE L1 -471 5409 4750 7 806 1025 145 6 0 chr3 28995312 28995491 -130604292 + CT-rich Low_complexity Low_complexity 1 180 0 7 806 539 147 10 0 chr3 28995505 28995607 -130604176 + T-rich Low_complexity Low_complexity 4 106 0 7 806 787 238 67 14 chr3 28995607 28995816 -130603967 - B4A SINE B4 -68 224 5 7 806 27 29 0 0 chr3 28996276 28996310 -130603473 + AT_rich Low_complexity Low_complexity 1 34 0 7 806 23 68 0 0 chr3 28996522 28996566 -130603217 + AT_rich Low_complexity Low_complexity 1 44 0 7 806 501 329 6 53 chr3 28996770 28996940 -130602843 - B4 SINE B4 -25 267 106 7 806 438 284 50 38 chr3 28997583 28997856 -130601927 - L1MA4 LINE L1 -219 6081 5804 7 806 435 289 87 70 chr3 28998404 28998776 -130601007 - LTR40a LTR ERVL -1 518 91 7 806 208 143 29 0 chr3 29001074 29001109 -130598674 + GA-rich Low_complexity Low_complexity 1 36 0 1 806 645 14 0 0 chr3 29001390 29001464 -130598319 + (TC)n Simple_repeat Simple_repeat 2 75 0 2 806 523 274 45 5 chr3 29001640 29001842 -130597941 + L1MA9 LINE L1 6101 6310 -2 3 806 245 208 0 14 chr3 29002715 29002788 -130596995 + CT-rich Low_complexity Low_complexity 1 72 0 4 806 334 347 272 13 chr3 29002798 29003030 -130596753 - B4 SINE B4 0 292 1 5 806 2894 160 112 22 chr3 29003430 29003725 -130596058 - RMER6C LTR ERVK 0 690 359 6 806 1592 31 5 5 chr3 29003725 29003917 -130595866 + B2_Mm1a SINE B2 2 193 0 7 806 2894 160 112 22 chr3 29003917 29004254 -130595529 - RMER6C LTR ERVK -332 358 2 6 806 220 191 0 0 chr3 29005374 29005421 -130594362 + (TCTG)n Simple_repeat Simple_repeat 3 49 0 8 806 640 216 204 0 chr3 29005421 29005583 -130594200 - ORR1D1 LTR MaLR -179 195 1 9 806 509 328 37 42 chr3 29005713 29006120 -130593663 - L1MB2 LINE L1 -262 5909 5505 1 806 32 26 0 0 chr3 29006140 29006179 -130593604 + AT_rich Low_complexity Low_complexity 1 39 0 1 806 902 288 86 110 chr3 29006468 29006797 -130592986 - RLTR16 LTR ERVK -76 452 1 1 806 3505 244 20 26 chr3 29006852 29007779 -130592004 - Lx9 LINE L1 -405 7239 6318 1 806 209 109 43 21 chr3 29007935 29007982 -130591801 + T-rich Low_complexity Low_complexity 3 50 0 1 806 775 238 75 27 chr3 29008031 29008325 -130591458 - Lx9 LINE L1 -1670 5974 5667 1 806 197 65 0 31 chr3 29008640 29008672 -130591111 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1 806 671 203 80 0 chr3 29008712 29008850 -130590933 - B1_Mur4 SINE Alu 0 150 2 1 806 579 228 108 38 chr3 29010493 29010781 -130589002 + L1ME4a LINE L1 5728 6035 -89 1 806 239 232 0 12 chr3 29011341 29011424 -130588359 + CT-rich Low_complexity Low_complexity 3 84 0 1 806 462 18 0 0 chr3 29011478 29011533 -130588250 + (CA)n Simple_repeat Simple_repeat 2 56 0 1 806 568 286 33 37 chr3 29011652 29011895 -130587888 + Lx9 LINE L1 7233 7474 -170 2 806 400 181 60 8 chr3 29011973 29012090 -130587693 + Lx9 LINE L1 7516 7638 -6 2 806 218 222 0 31 chr3 29012123 29012188 -130587595 + CT-rich Low_complexity Low_complexity 3 65 0 2 806 21 57 0 0 chr3 29012570 29012605 -130587178 + AT_rich Low_complexity Low_complexity 1 35 0 2 806 1209 52 0 0 chr3 29013256 29013409 -130586374 + (TGG)n Simple_repeat Simple_repeat 2 154 0 2 806 198 103 0 0 chr3 29013883 29013912 -130585871 + (CAA)n Simple_repeat Simple_repeat 2 30 0 2 806 374 294 152 14 chr3 29014061 29014206 -130585577 - RMER30 DNA MER1_type -2 200 36 2 806 665 296 27 5 chr3 29014365 29014552 -130585231 - B3 SINE B2 -25 191 1 2 806 213 293 0 17 chr3 29014713 29014772 -130585011 + GA-rich Low_complexity Low_complexity 3 60 0 2 806 345 24 0 0 chr3 29015698 29015740 -130584043 + (TG)n Simple_repeat Simple_repeat 2 43 0 2 806 737 222 56 10 chr3 29016234 29016430 -130583353 - Lx LINE L1 -347 7126 6922 2 806 233 300 66 44 chr3 29016456 29016592 -130583191 + Lx8 LINE L1 7156 7294 -179 3 806 387 0 0 0 chr3 29019027 29019070 -130580713 + (TA)n Simple_repeat Simple_repeat 2 44 0 3 806 31 44 0 0 chr3 29019072 29019117 -130580666 + AT_rich Low_complexity Low_complexity 1 45 0 3 806 1523 192 11 26 chr3 29019117 29019465 -130580318 - Lx LINE L1 -30 6624 6282 2 806 561 278 152 77 chr3 29019465 29019801 -130579982 + MTE2a LTR MaLR 19 379 0 3 806 292 341 0 54 chr3 29020740 29020870 -130578913 - RMER12 LTR ERVK -466 856 734 3 806 613 273 154 0 chr3 29020875 29021102 -130578681 + MTEb LTR MaLR 117 378 -1 3 806 234 167 24 0 chr3 29022587 29022629 -130577154 + MTE2a LTR MaLR 1 43 -336 3 806 5908 70 0 0 chr3 29022642 29023400 -130576383 - L1Md_T LINE L1 0 6582 5825 3 806 316 279 70 26 chr3 29023433 29023547 -130576236 + B4A SINE B4 1 119 -173 3 806 235 250 33 67 chr3 29024611 29024701 -130575082 - Tigger9a DNA Tigger -401 331 245 3 806 190 179 69 35 chr3 29024801 29024859 -130574924 - MIRm SINE MIR -184 92 33 4 806 191 345 88 20 chr3 29025594 29025742 -130574041 - L4 LINE RTE -174 1855 1698 4 806 473 130 6 125 chr3 29025751 29025927 -130573856 - Lx9 LINE L1 -1 7643 7489 4 806 1085 257 17 7 chr3 29025936 29026234 -130573549 + Lx9 LINE L1 7138 7438 -206 4 806 329 352 147 43 chr3 29027068 29027463 -130572320 - L4 LINE RTE -1211 818 383 4 806 424 375 124 26 chr3 29027674 29027940 -130571843 - B4A SINE B4 0 292 1 4 806 2302 261 62 39 chr3 29028398 29029715 -130570068 + L1_Rod LINE L1 914 2256 -3591 4 806 210 102 16 48 chr3 29030238 29030300 -130569483 + T-rich Low_complexity Low_complexity 2 61 0 4 806 354 129 0 0 chr3 29030424 29030486 -130569297 + (TTTA)n Simple_repeat Simple_repeat 3 64 0 4 806 620 250 68 8 chr3 29030548 29030681 -130569102 - RSINE1 SINE B4 -22 143 3 4 806 864 0 0 0 chr3 29030930 29031026 -130568757 + (GGAGA)n Simple_repeat Simple_repeat 5 100 0 4 806 294 29 0 0 chr3 29031144 29031179 -130568604 + (CA)n Simple_repeat Simple_repeat 1 35 0 5 806 538 325 0 89 chr3 29032200 29032257 -130567526 + RSINE1 SINE B4 2 56 -109 5 806 2966 63 5 12 chr3 29032257 29032656 -130567127 + MTA_Mm LTR MaLR 1 396 0 5 806 538 325 0 89 chr3 29032656 29032751 -130567032 + RSINE1 SINE B4 57 143 -22 5 806 188 111 0 27 chr3 29032751 29032788 -130566995 + (CA)n Simple_repeat Simple_repeat 1 36 0 5 806 538 325 0 89 chr3 29032788 29032813 -130566970 + RSINE1 SINE B4 144 164 -1 5 806 1504 173 113 30 chr3 29032996 29033423 -130566360 - RLTR28 LTR ERVL 0 524 1 5 806 503 275 76 14 chr3 29036198 29036342 -130563441 - RSINE1 SINE B4 -10 155 3 5 806 261 0 0 0 chr3 29038413 29038442 -130561341 + (T)n Simple_repeat Simple_repeat 1 29 0 5 806 669 216 99 38 chr3 29038481 29038575 -130561208 + ORR1C2 LTR MaLR 144 234 -150 5 806 212 59 29 0 chr3 29038575 29038609 -130561174 + (CCTG)n Simple_repeat Simple_repeat 4 38 0 5 806 669 216 99 38 chr3 29038609 29038726 -130561057 + ORR1C2 LTR MaLR 235 368 -16 5 806 266 0 29 0 chr3 29038807 29038841 -130560942 + (TCTA)n Simple_repeat Simple_repeat 4 38 0 5 806 4618 62 10 0 chr3 29039243 29039827 -130559956 + L1_Mus1 LINE L1 5978 6567 0 6 806 375 338 39 32 chr3 29040116 29040272 -130559511 - RSINE1 SINE B4 -6 159 3 6 806 597 333 21 0 chr3 29040322 29040629 -130559154 - L1M2 LINE L1 -1157 4983 4666 6 806 203 0 0 36 chr3 29040963 29040991 -130558792 + (TTA)n Simple_repeat Simple_repeat 1 27 0 6 806 239 152 38 12 chr3 29044557 29044637 -130555146 + (TA)n Simple_repeat Simple_repeat 1 82 0 6 806 750 160 35 7 chr3 29044677 29044697 -130555086 - B1_Mur2 SINE Alu 0 149 126 6 806 351 0 0 0 chr3 29044697 29044736 -130555047 + (TG)n Simple_repeat Simple_repeat 2 40 0 6 806 750 160 35 7 chr3 29044736 29044860 -130554923 - B1_Mur2 SINE Alu -24 125 2 6 806 3205 60 44 0 chr3 29045089 29045523 -130554260 - L1Md_F2 LINE L1 -296 6286 5834 6 806 2198 77 0 3 chr3 29045523 29045811 -130553972 + L1Md_F2 LINE L1 6284 6570 -12 6 806 260 347 117 29 chr3 29046544 29046817 -130552966 + L4 LINE RTE 1669 1965 -64 6 806 912 172 43 11 chr3 29046898 29047086 -130552697 - B2_Mm2 SINE B2 0 195 2 6 806 219 22 0 118 chr3 29047169 29047220 -130552563 + (CAAAAA)n Simple_repeat Simple_repeat 5 49 0 7 806 208 232 0 35 chr3 29048179 29048237 -130551546 + (TATATG)n Simple_repeat Simple_repeat 4 59 0 7 806 882 149 0 0 chr3 29048524 29048765 -130551018 + (TG)n Simple_repeat Simple_repeat 1 241 0 7 806 854 139 0 22 chr3 29048783 29048967 -130550816 + (TG)n Simple_repeat Simple_repeat 1 180 0 7 806 428 292 103 103 chr3 29048978 29049268 -130550515 - B4 SINE B4 -1 291 2 7 806 243 0 0 0 chr3 29049295 29049322 -130550461 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 7 806 456 19 0 0 chr3 29050012 29050065 -130549718 + (TG)n Simple_repeat Simple_repeat 1 53 0 7 806 485 226 184 68 chr3 29050082 29050229 -130549554 - B3A SINE B2 -30 168 2 7 806 1248 99 119 5 chr3 29050997 29051199 -130548584 - URR1B DNA MER1_type 0 225 1 7 806 252 0 0 0 chr3 29053113 29053141 -130546642 + (T)n Simple_repeat Simple_repeat 1 28 0 7 806 353 303 42 36 chr3 29053525 29053717 -130546066 + Charlie19a DNA Charlie 179 371 -15 7 806 519 17 0 0 chr3 29055837 29055897 -130543886 + (TC)n Simple_repeat Simple_repeat 1 60 0 8 806 383 269 8 42 chr3 29057004 29057124 -130542659 + MLT1C LTR MaLR 1 116 -351 8 806 306 333 102 24 chr3 29057142 29057348 -130542435 + MLT1C LTR MaLR 179 400 -67 8 806 260 243 56 14 chr3 29058730 29058801 -130540982 - MLT1A0 LTR MaLR -276 89 16 8 806 27 49 0 0 chr3 29059487 29059528 -130540255 + AT_rich Low_complexity Low_complexity 1 41 0 8 806 831 227 18 4 chr3 29059598 29059796 -130539987 - B3 SINE B2 -1 197 1 8 806 569 196 48 38 chr3 29060911 29061097 -130538686 + Lx9 LINE L1 7455 7642 -2 8 806 251 316 30 66 chr3 29061297 29061463 -130538320 - MIR SINE MIR -50 212 53 8 806 23 0 0 29 chr3 29061583 29061603 -130538180 + AT_rich Low_complexity Low_complexity 1 20 0 8 806 982 140 98 0 chr3 29061603 29061767 -130538016 - B2_Mm2 SINE B2 -14 181 2 8 806 23 0 0 29 chr3 29061767 29061780 -130538003 + AT_rich Low_complexity Low_complexity 1 13 0 8 806 270 0 0 0 chr3 29061850 29061880 -130537903 + (CAGA)n Simple_repeat Simple_repeat 3 32 0 9 806 1104 237 154 37 chr3 29061913 29062264 -130537519 - RMER15 LTR ERVL -154 421 30 9 806 248 292 0 44 chr3 29062313 29062381 -130537402 - RMER15 LTR ERVL -510 65 1 9 806 363 348 190 35 chr3 29063223 29063595 -130536188 + MER77 LTR ERVL 175 604 -3 9 806 562 332 115 19 chr3 29064426 29064739 -130535044 + MER2 DNA MER2_type 2 344 -1 9 806 2629 148 51 0 chr3 29065931 29066383 -130533400 + Lx2 LINE L1 6523 6997 0 9 806 471 145 0 0 chr3 29066418 29066501 -130533282 + (GA)n Simple_repeat Simple_repeat 2 84 0 9 806 242 288 14 0 chr3 29066947 29067020 -130532763 + (TATG)n Simple_repeat Simple_repeat 1 74 0 9 806 477 306 7 59 chr3 29067076 29067229 -130532554 - B4A SINE B4 -39 253 109 9 806 214 325 43 61 chr3 29067347 29067511 -130532272 + L3 LINE CR1 4324 4484 -5 9 806 248 362 77 30 chr3 29069939 29070107 -130529676 - MIR SINE MIR -81 181 6 9 806 342 0 0 0 chr3 29071533 29071571 -130528212 + (TG)n Simple_repeat Simple_repeat 2 39 0 1 806 456 281 191 6 chr3 29071636 29071804 -130527979 - B4A SINE B4 -74 218 20 1 806 1805 183 148 6 chr3 29071816 29072174 -130527609 + MTC LTR MaLR 13 421 0 1 806 714 306 72 3 chr3 29072232 29072580 -130527203 - L1_Mur3 LINE L1 -814 5066 4695 1 806 207 0 0 0 chr3 29072619 29072642 -130527141 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1 806 2223 287 63 58 chr3 29072774 29073743 -130526040 + Lx8 LINE L1 6369 7341 -132 1 806 441 0 0 0 chr3 29073743 29073792 -130525991 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 806 2223 287 63 58 chr3 29073792 29073825 -130525958 + Lx8 LINE L1 7342 7376 -97 1 806 423 0 0 0 chr3 29073839 29073886 -130525897 + (TTCC)n Simple_repeat Simple_repeat 3 49 0 1 806 1059 103 14 0 chr3 29073906 29074051 -130525732 - B1_Mus1 SINE Alu 0 148 2 1 806 455 319 18 25 chr3 29074267 29074550 -130525233 + L1M3 LINE L1 3695 3975 -2165 1 806 288 264 0 14 chr3 29075157 29075230 -130524553 - ID4 SINE ID -10 73 2 1 806 248 361 16 63 chr3 29075901 29076028 -130523755 + MLT1A LTR MaLR 218 338 -36 1 806 393 323 104 14 chr3 29076686 29076906 -130522877 - MIR SINE MIR -14 248 9 1 806 416 300 32 32 chr3 29077307 29077462 -130522321 + HAL1-2a_MD LINE L1 2348 2502 -522 1 806 248 272 153 56 chr3 29078140 29078284 -130521499 + MIRb SINE MIR 84 241 -21 1 806 265 307 148 65 chr3 29078699 29078915 -130520868 + L2a LINE L2 3191 3424 -2 1 806 334 289 13 0 chr3 29079032 29079108 -130520675 - ID4 SINE ID -5 78 2 1 806 934 258 171 60 chr3 29079334 29079668 -130520115 + MTE2b LTR MaLR 1 371 -8 1 806 1769 132 5 138 chr3 29079810 29080180 -130519603 + ORR1A4 LTR MaLR 1 321 -8 1 806 237 33 0 0 chr3 29081585 29081615 -130518168 + (TCTG)n Simple_repeat Simple_repeat 2 31 0 1 806 188 331 83 57 chr3 29082710 29082867 -130516916 + MIRc SINE MIR 43 203 -65 1 806 228 212 0 0 chr3 29083993 29084059 -130515724 + (TG)n Simple_repeat Simple_repeat 2 67 0 1 806 22 0 0 0 chr3 29084689 29084711 -130515072 + AT_rich Low_complexity Low_complexity 1 22 0 1 806 393 324 54 0 chr3 29084758 29084869 -130514914 - RSINE1 SINE B4 -46 119 3 1 806 225 384 117 20 chr3 29085429 29085727 -130514056 + L2 LINE L2 2476 2802 -617 1 806 1131 254 109 19 chr3 29086541 29086862 -130512921 + ORR1E LTR MaLR 4 353 -6 1 806 1490 247 69 16 chr3 29086972 29087351 -130512432 - MTD LTR MaLR -3 416 18 1 806 886 161 11 0 chr3 29087772 29087946 -130511837 + GA-rich Low_complexity Low_complexity 3 178 0 1 806 191 167 0 23 chr3 29087964 29088007 -130511776 + GA-rich Low_complexity Low_complexity 4 45 0 1 806 433 306 27 14 chr3 29089656 29089802 -130509981 + B3A SINE B2 38 185 -13 1 806 630 274 77 31 chr3 29090163 29090359 -130509424 - B3 SINE B2 -6 210 6 1 806 450 263 51 37 chr3 29090388 29090700 -130509083 - L1MA5 LINE L1 -142 6158 5848 1 806 400 332 82 21 chr3 29090863 29091241 -130508542 - L1M2a LINE L1 -5025 2143 1743 1 806 251 306 49 44 chr3 29093171 29093376 -130506407 - L1ME2z LINE L1 -322 6122 5917 1 806 659 256 0 0 chr3 29096514 29096647 -130503136 + RSINE1 SINE B4 12 144 -21 1 806 180 176 0 0 chr3 29096666 29096700 -130503083 + (TAAA)n Simple_repeat Simple_repeat 1 34 0 1 806 261 0 0 0 chr3 29097661 29097690 -130502093 + (T)n Simple_repeat Simple_repeat 1 29 0 1 807 216 321 0 87 chr3 29098509 29098601 -130501182 - B1F2 SINE Alu -65 84 1 1 807 271 277 0 15 chr3 29098619 29098685 -130501098 + ID4 SINE ID 12 76 -7 1 807 219 299 15 0 chr3 29098718 29098785 -130500998 + GA-rich Low_complexity Low_complexity 1 68 0 1 807 28 0 0 0 chr3 29099103 29099131 -130500652 + AT_rich Low_complexity Low_complexity 1 28 0 1 807 314 45 23 0 chr3 29099509 29099553 -130500230 + (GGAA)n Simple_repeat Simple_repeat 3 47 0 1 807 431 52 0 0 chr3 29100305 29100363 -130499420 + B1_Mm SINE Alu 89 146 -1 1 807 187 104 20 20 chr3 29100364 29100413 -130499370 + (CAAAA)n Simple_repeat Simple_repeat 3 51 0 1 807 874 186 131 0 chr3 29100732 29100931 -130498852 + URR1A DNA MER1_type 1 225 -1 1 807 412 259 0 0 chr3 29102120 29102201 -130497582 + RSINE1 SINE B4 11 91 -74 1 807 506 237 8 48 chr3 29102544 29102668 -130497115 + MTC LTR MaLR 2 120 -301 1 807 678 122 0 0 chr3 29102668 29102775 -130497008 + (TTCC)n Simple_repeat Simple_repeat 1 107 0 1 807 834 150 14 36 chr3 29102776 29102914 -130496869 - B1_Mur3 SINE Alu -13 136 2 1 807 1281 196 65 8 chr3 29102925 29103169 -130496614 + MTC LTR MaLR 114 374 -47 1 807 239 0 32 0 chr3 29103169 29103200 -130496583 + (TG)n Simple_repeat Simple_repeat 1 32 0 1 807 324 0 0 0 chr3 29103200 29103235 -130496548 + (GA)n Simple_repeat Simple_repeat 1 36 0 1 807 1281 196 65 8 chr3 29103235 29103251 -130496532 + MTC LTR MaLR 375 388 -33 1 807 2742 127 0 12 chr3 29103255 29103684 -130496099 - Lx2B LINE L1 -219 6781 6358 1 807 328 106 0 28 chr3 29103685 29103742 -130496041 + MTD LTR MaLR 312 411 -8 1 807 21 0 0 0 chr3 29103981 29104002 -130495781 + AT_rich Low_complexity Low_complexity 1 21 0 1 807 579 207 21 35 chr3 29104044 29104189 -130495594 - RMER1C Other Other 0 1342 1200 1 807 315 161 0 0 chr3 29104189 29104245 -130495538 + GA-rich Low_complexity Low_complexity 1 56 0 1 807 1496 198 20 85 chr3 29104260 29104658 -130495125 - RMER1C Other Other -117 1225 854 1 807 266 208 53 40 chr3 29105436 29105511 -130494272 - MER97c DNA MER1_type? -16 1074 999 1 807 851 320 62 57 chr3 29105572 29106009 -130493774 - MER97c DNA MER1_type? -410 680 242 1 807 2156 197 17 17 chr3 29106291 29106704 -130493079 + MTC LTR MaLR 1 413 -8 1 807 2245 158 23 5 chr3 29106899 29107286 -130492497 + ORR1B1 LTR MaLR 1 394 0 1 807 316 211 65 22 chr3 29107398 29107490 -130492293 - BC1_Mm scRNA scRNA -54 98 3 1 807 910 269 116 90 chr3 29109233 29109551 -130490232 + MTD LTR MaLR 1 315 -104 1 807 1088 160 0 55 chr3 29109551 29109769 -130490014 - Lx3B LINE L1 -4 6969 6764 1 807 910 269 116 90 chr3 29109769 29109838 -130489945 + MTD LTR MaLR 316 398 -21 1 807 435 350 138 17 chr3 29111075 29111430 -130488353 + MLT1C LTR MaLR 60 457 -10 1 807 1010 138 6 12 chr3 29111458 29111626 -130488157 + URR1B DNA MER1_type 59 225 0 1 807 249 257 73 37 chr3 29112148 29112257 -130487526 + RLTR22_Mur LTR ERVK 1307 1419 -429 1 807 308 342 100 49 chr3 29112865 29113416 -130486367 - L2a LINE L2 -40 3386 2805 1 807 696 24 0 0 chr3 29116495 29116577 -130483206 + (TTTC)n Simple_repeat Simple_repeat 3 84 0 1 807 473 250 0 9 chr3 29116785 29116898 -130482885 + PB1D9 SINE Alu 2 113 -7 1 807 1408 269 0 7 chr3 29116996 29117306 -130482477 - Lx8 LINE L1 -131 7342 7035 1 807 413 318 117 33 chr3 29117512 29117879 -130481904 + L1ME1 LINE L1 45 442 -5958 1 807 297 268 42 14 chr3 29117910 29117982 -130481801 + ID_B1 SINE B4 89 162 -62 1 807 980 206 113 181 chr3 29117989 29118165 -130481618 - ORR1D1 LTR MaLR -4 370 183 1 807 405 0 0 0 chr3 29118165 29118210 -130481573 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 807 980 206 113 181 chr3 29118210 29118274 -130481509 - ORR1D1 LTR MaLR -192 182 163 1 807 686 44 11 0 chr3 29118274 29118364 -130481419 + (GAA)n Simple_repeat Simple_repeat 3 93 0 1 807 980 206 113 181 chr3 29118364 29118519 -130481264 - ORR1D1 LTR MaLR -212 162 1 1 807 245 182 0 0 chr3 29118527 29118571 -130481212 + ID_B1 SINE B4 170 213 -11 1 807 274 243 189 0 chr3 29118651 29118725 -130481058 + B1F SINE Alu 55 142 -7 1 807 590 308 105 16 chr3 29118910 29119278 -130480505 + L1ME1 LINE L1 2888 3288 -3031 1 807 438 36 0 0 chr3 29119278 29119334 -130480449 + (CAA)n Simple_repeat Simple_repeat 2 57 0 1 807 590 308 105 16 chr3 29119334 29119517 -130480266 + L1ME1 LINE L1 3289 3487 -2832 1 807 235 242 97 0 chr3 29119649 29119711 -130480072 + ID4_ SINE ID 2 69 -14 1 807 313 268 99 25 chr3 29119771 29119932 -130479851 + L1ME1 LINE L1 3667 3839 -2480 1 807 285 29 0 0 chr3 29120244 29120278 -130479505 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 1 807 468 371 38 28 chr3 29120289 29120724 -130479059 + L1ME1 LINE L1 4134 4574 -1745 1 807 1632 146 73 73 chr3 29120876 29121230 -130478553 + ORR1B1 LTR MaLR 41 394 0 1 807 1300 302 85 34 chr3 29121299 29122395 -130477388 + L1ME1 LINE L1 4693 5867 -485 1 807 586 257 144 12 chr3 29122395 29122568 -130477215 + B3A SINE B2 3 198 0 1 807 857 293 88 55 chr3 29122568 29122868 -130476915 + L1ME1 LINE L1 5868 6156 -195 1 807 19852 88 13 2 chr3 29123140 29126554 -130473229 + L1_Mus1 LINE L1 3109 6566 -1 1 807 652 289 125 20 chr3 29127071 29127375 -130472408 - MLT1B LTR MaLR -9 381 46 1 807 569 269 78 0 chr3 29129023 29129164 -130470619 - RSINE1 SINE B4 -8 157 6 1 807 306 0 0 0 chr3 29129575 29129609 -130470174 + (GA)n Simple_repeat Simple_repeat 2 35 0 1 807 235 0 57 0 chr3 29129734 29129769 -130470014 + (TTTTTG)n Simple_repeat Simple_repeat 2 38 0 1 807 182 105 26 0 chr3 29130167 29130205 -130469578 + (CAAAAA)n Simple_repeat Simple_repeat 2 40 0 1 807 519 244 167 21 chr3 29130320 29130559 -130469224 + L1MA7 LINE L1 5709 5982 -309 1 807 1072 247 113 3 chr3 29130584 29130893 -130468890 + ORR1D1 LTR MaLR 1 343 -31 1 807 21 0 0 0 chr3 29131527 29131548 -130468235 + AT_rich Low_complexity Low_complexity 1 21 0 1 807 21 0 0 0 chr3 29131883 29131904 -130467879 + AT_rich Low_complexity Low_complexity 1 21 0 1 807 210 82 38 75 chr3 29132466 29132519 -130467264 + (TTTG)n Simple_repeat Simple_repeat 2 52 0 1 807 597 219 29 21 chr3 29132527 29132667 -130467116 - B1_Mur1 SINE Alu -8 141 1 1 807 291 326 10 0 chr3 29132814 29132912 -130466871 + Lx8 LINE L1 7213 7311 -162 1 807 416 35 17 0 chr3 29133758 29133816 -130465967 + (TTTTA)n Simple_repeat Simple_repeat 2 60 0 1 807 421 242 22 0 chr3 29133818 29133918 -130465865 - B1F SINE Alu -12 108 7 1 807 432 97 0 0 chr3 29134788 29134850 -130464933 + (T)n Simple_repeat Simple_repeat 1 62 0 1 807 219 116 23 23 chr3 29137636 29137680 -130462103 + (TA)n Simple_repeat Simple_repeat 1 44 0 1 807 291 329 174 41 chr3 29139231 29139395 -130460388 + B4A SINE B4 39 201 -91 1 807 971 73 7 0 chr3 29139395 29139545 -130460238 + (GA)n Simple_repeat Simple_repeat 1 151 0 1 807 291 329 174 41 chr3 29139545 29139599 -130460184 + B4A SINE B4 202 285 -7 1 807 210 37 0 0 chr3 29139625 29139652 -130460131 + (CA)n Simple_repeat Simple_repeat 1 27 0 1 807 23 33 0 0 chr3 29139740 29139770 -130460013 + AT_rich Low_complexity Low_complexity 1 30 0 1 807 433 275 47 88 chr3 29140303 29140598 -130459185 - ORR1E LTR MaLR -1 358 2 2 807 357 289 74 86 chr3 29140728 29140891 -130458892 + RSINE1 SINE B4 5 165 0 2 807 471 35 0 0 chr3 29141255 29141312 -130458471 + (CA)n Simple_repeat Simple_repeat 2 58 0 2 807 543 96 0 0 chr3 29143247 29143330 -130456453 + (TCCC)n Simple_repeat Simple_repeat 3 85 0 2 807 351 292 160 0 chr3 29143351 29143457 -130456326 - B1_Mur2 SINE Alu -20 129 7 2 807 5931 193 88 13 chr3 29143596 29145000 -130454783 - Lx5 LINE L1 -12 7046 5510 2 807 10787 169 46 30 chr3 29144998 29145356 -130454427 - Lx5 LINE L1 -1438 4439 4079 2 807 1500 132 33 0 chr3 29145356 29145598 -130454185 - L1_Mus3 LINE L1 0 6638 6389 2 807 10787 169 46 30 chr3 29145598 29147581 -130452202 - Lx5 LINE L1 -1799 4078 2061 2 807 246 32 0 0 chr3 29147585 29147616 -130452167 + (TC)n Simple_repeat Simple_repeat 2 32 0 2 807 524 147 28 38 chr3 29147682 29147788 -130451995 - Lx5 LINE L1 -4427 1450 1346 2 807 711 112 0 0 chr3 29147790 29147897 -130451886 + (TTC)n Simple_repeat Simple_repeat 1 107 0 2 807 1625 215 33 72 chr3 29147897 29148386 -130451397 - Lx5 LINE L1 -4520 1363 893 2 807 264 368 48 14 chr3 29148894 29149040 -130450743 - RMER15 LTR ERVL -15 560 410 2 807 793 316 35 9 chr3 29149990 29150217 -130449566 + B4A SINE B4 2 234 -58 2 807 431 35 0 17 chr3 29150282 29150340 -130449443 + (TAA)n Simple_repeat Simple_repeat 2 58 0 2 807 234 238 30 60 chr3 29150340 29150407 -130449376 + B4A SINE B4 228 292 0 2 807 334 306 106 72 chr3 29150540 29150804 -130448979 + B4 SINE B4 1 273 -19 2 807 501 84 0 0 chr3 29150824 29150895 -130448888 + (CA)n Simple_repeat Simple_repeat 2 72 0 2 807 22 56 0 0 chr3 29151133 29151169 -130448614 + AT_rich Low_complexity Low_complexity 1 36 0 2 807 791 182 90 64 chr3 29151197 29151385 -130448398 - ORR1C2 LTR MaLR 0 384 192 2 807 30 0 0 0 chr3 29151547 29151577 -130448206 + AT_rich Low_complexity Low_complexity 1 30 0 2 807 574 275 131 0 chr3 29151593 29151753 -130448030 - ORR1C2 LTR MaLR -193 181 1 2 807 2458 167 12 39 chr3 29151908 29152400 -130447383 - Lx LINE L1 0 6654 6176 2 807 247 278 77 32 chr3 29152435 29152591 -130447192 + RSINE1 SINE B4 3 165 0 2 807 922 189 12 0 chr3 29153147 29153316 -130446467 + URR1A DNA MER1_type 56 226 0 2 807 354 285 78 54 chr3 29153316 29153349 -130446434 - CYRA11_Mm Unknown Y-chromosome -278 337 131 2 807 527 337 84 20 chr3 29153372 29153717 -130446066 - Lx7 LINE L1 -522 7174 6808 2 807 567 240 16 8 chr3 29153795 29153917 -130445866 - Lx8 LINE L1 -979 6494 6372 2 807 390 253 0 0 chr3 29153913 29154000 -130445783 - L1_Mur3 LINE L1 -1128 4752 4666 2 807 280 195 26 0 chr3 29154029 29154106 -130445677 - Lx9 LINE L1 -20 7624 7546 2 807 578 60 20 20 chr3 29154140 29154242 -130445541 + (TA)n Simple_repeat Simple_repeat 1 102 0 2 807 4831 267 140 41 chr3 29154258 29156061 -130443722 - L1_Mur3 LINE L1 -1588 4292 2219 2 807 207 0 0 0 chr3 29156061 29156084 -130443699 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2 807 1093 36 0 49 chr3 29156087 29156231 -130443552 - B1_Mm SINE Alu -6 141 5 2 807 4831 267 140 41 chr3 29156231 29157183 -130442600 - L1_Mur3 LINE L1 -3662 2218 1259 2 807 351 0 0 0 chr3 29157384 29157423 -130442360 + (TG)n Simple_repeat Simple_repeat 2 40 0 2 807 618 14 0 0 chr3 29157740 29157811 -130441972 + (CA)n Simple_repeat Simple_repeat 2 72 0 2 807 207 0 0 0 chr3 29157985 29158008 -130441775 + (TG)n Simple_repeat Simple_repeat 2 24 0 2 807 1552 221 20 56 chr3 29158098 29158237 -130441546 - RLTR14 LTR ERV1 0 382 244 2 807 342 0 0 0 chr3 29158237 29158275 -130441508 + (CA)n Simple_repeat Simple_repeat 2 39 0 2 807 1552 221 20 56 chr3 29158275 29158305 -130441478 - RLTR14 LTR ERV1 -139 243 228 2 807 297 0 0 0 chr3 29158305 29158338 -130441445 + (CAAA)n Simple_repeat Simple_repeat 1 33 0 2 807 1552 221 20 56 chr3 29158338 29158560 -130441223 - RLTR14 LTR ERV1 -155 227 5 2 807 260 27 0 26 chr3 29158620 29158658 -130441125 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 2 807 356 345 27 7 chr3 29158681 29158830 -130440953 - RLTR14-int LTR ERV1 -272 5045 4894 2 807 378 0 0 0 chr3 29159880 29159922 -130439861 + (T)n Simple_repeat Simple_repeat 1 42 0 2 807 247 217 72 0 chr3 29160518 29160587 -130439196 - Lx9 LINE L1 -9 7635 7562 2 807 309 194 27 14 chr3 29160588 29160661 -130439122 + Lx9 LINE L1 7391 7464 -180 2 807 526 263 112 31 chr3 29160720 29160881 -130438902 - B3A SINE B2 -16 182 9 2 807 182 37 0 36 chr3 29160976 29161004 -130438779 + (TAA)n Simple_repeat Simple_repeat 2 28 0 2 807 494 288 17 0 chr3 29161165 29161283 -130438500 - RSINE1 SINE B4 -43 122 3 2 807 1084 86 0 0 chr3 29161965 29162105 -130437678 + B1_Mus1 SINE Alu 2 141 -7 2 807 596 111 9 0 chr3 29162683 29162791 -130436992 + (TC)n Simple_repeat Simple_repeat 1 109 0 2 807 469 352 56 43 chr3 29162993 29163296 -130436487 - MLT1A0 LTR MaLR -58 307 1 2 807 674 169 133 43 chr3 29163750 29163960 -130435823 - Lx9 LINE L1 -1 7643 7415 2 807 216 0 0 0 chr3 29167053 29167077 -130432706 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 2 807 1133 268 105 30 chr3 29167390 29167516 -130432267 - Lx8 LINE L1 -11 7462 7343 2 807 506 286 80 25 chr3 29167516 29167717 -130432066 - B3 SINE B2 -4 212 1 2 807 1133 268 105 30 chr3 29167717 29168122 -130431661 - Lx8 LINE L1 -131 7342 6891 2 807 849 234 21 23 chr3 29168416 29168788 -130430995 + MERVL_2A-int LTR ERVL 108 542 -5219 2 807 1613 214 70 0 chr3 29168795 29169154 -130430629 + MERVL_2A-int LTR ERVL 2480 2863 -2898 2 807 427 260 22 27 chr3 29169180 29169319 -130430464 + MTD LTR MaLR 239 405 -14 2 807 185 62 40 40 chr3 29169375 29169425 -130430358 + (CAA)n Simple_repeat Simple_repeat 2 51 0 2 807 1390 292 100 0 chr3 29169438 29169927 -130429856 + Lx8 LINE L1 6339 6876 -597 2 807 312 263 165 58 chr3 29170238 29170359 -130429424 + MLT1A0 LTR MaLR 124 257 -108 2 807 1191 75 0 0 chr3 29170451 29170611 -130429172 + L1_Mus3 LINE L1 6144 6303 -335 2 807 839 29 27 68 chr3 29170611 29170757 -130429026 + L1_Mus3 LINE L1 6499 6638 0 2 807 283 163 36 55 chr3 29171087 29171197 -130428586 + (TA)n Simple_repeat Simple_repeat 2 109 0 2 807 24 0 0 0 chr3 29171983 29172007 -130427776 + AT_rich Low_complexity Low_complexity 1 24 0 2 807 247 282 0 14 chr3 29172332 29172404 -130427379 - Kanga1c DNA Tc2 -642 87 17 2 807 799 249 15 20 chr3 29172840 29173037 -130426746 + B3 SINE B2 6 201 -15 2 807 1230 279 21 34 chr3 29173094 29173169 -130426614 + MTEb LTR MaLR 6 78 -301 2 807 1144 238 78 67 chr3 29173169 29173543 -130426240 + ORR1C1 LTR MaLR 1 378 0 2 807 1230 279 21 34 chr3 29173543 29173846 -130425937 + MTEb LTR MaLR 79 379 0 2 807 285 233 0 0 chr3 29174031 29174121 -130425662 + (TCTA)n Simple_repeat Simple_repeat 3 92 0 2 807 205 0 0 162 chr3 29174125 29174322 -130425461 + (GCCTG)n Simple_repeat Simple_repeat 4 168 0 2 807 371 309 143 10 chr3 29176385 29176571 -130423212 + MLT1A-int LTR MaLR 302 507 -864 2 807 1296 55 0 0 chr3 29176571 29176736 -130423047 + (TAGA)n Simple_repeat Simple_repeat 4 168 0 2 807 371 309 143 10 chr3 29176736 29176856 -130422927 + MLT1A-int LTR MaLR 508 648 -723 2 807 874 292 110 35 chr3 29176919 29177292 -130422491 + MTD LTR MaLR 5 405 -14 2 807 756 295 87 45 chr3 29177536 29177845 -130421938 - RMER5 LTR ERV1 -180 354 33 2 807 467 345 91 5 chr3 29178086 29178307 -130421476 + MLT-int LTR MaLR 1356 1595 -140 2 807 32629 80 10 2 chr3 29178318 29184427 -130415356 - L1Md_F2 LINE L1 -14 6568 409 2 807 198 0 0 0 chr3 29184521 29184543 -130415240 + (T)n Simple_repeat Simple_repeat 1 22 0 2 807 589 293 84 62 chr3 29184607 29184916 -130414867 + MLT1A LTR MaLR 39 354 -20 2 807 568 350 59 28 chr3 29185427 29185680 -130414103 + B4A SINE B4 32 292 0 2 807 206 250 11 0 chr3 29185726 29185814 -130413969 + (CA)n Simple_repeat Simple_repeat 2 90 0 2 807 232 244 22 22 chr3 29185834 29185968 -130413815 + (CATATA)n Simple_repeat Simple_repeat 1 134 0 2 807 257 287 7 0 chr3 29185979 29186115 -130413668 + (CATATA)n Simple_repeat Simple_repeat 6 142 0 2 807 892 153 7 20 chr3 29188083 29188230 -130411553 + B1_Mur4 SINE Alu 1 145 -5 2 807 189 0 0 0 chr3 29188251 29188272 -130411511 + (TTTTG)n Simple_repeat Simple_repeat 3 23 0 2 807 1024 103 0 0 chr3 29188272 29188408 -130411375 - B1_Mus1 SINE Alu -11 137 2 2 807 601 324 29 6 chr3 29188877 29189051 -130410732 + ID_B1 SINE B4 4 181 -43 2 807 840 120 0 0 chr3 29189080 29189230 -130410553 + (GA)n Simple_repeat Simple_repeat 2 151 0 2 807 399 73 0 0 chr3 29189421 29189476 -130410307 + (TG)n Simple_repeat Simple_repeat 1 55 0 2 807 550 343 14 45 chr3 29189541 29189761 -130410022 - B4 SINE B4 -77 215 3 2 807 204 48 23 45 chr3 29190911 29190955 -130408828 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 2 807 4047 16 0 0 chr3 29193446 29193984 -130405799 + L1Md_A LINE L1 5400 5937 -645 2 807 1298 208 98 26 chr3 29194291 29194532 -130405251 + Lx9 LINE L1 7178 7423 -221 2 807 204 40 0 0 chr3 29194532 29194557 -130405226 + (TA)n Simple_repeat Simple_repeat 1 25 0 2 807 1298 208 98 26 chr3 29194557 29194744 -130405039 + Lx9 LINE L1 7424 7637 -7 2 807 264 301 25 106 chr3 29194983 29195143 -130404640 - B1F1 SINE Alu -1 148 2 2 807 961 197 108 23 chr3 29195255 29195562 -130404221 - Lx7 LINE L1 0 7696 7364 2 807 2075 214 74 22 chr3 29195643 29195717 -130404066 - Lx7 LINE L1 -329 7367 7292 2 807 198 0 0 0 chr3 29195717 29195739 -130404044 + (TTTA)n Simple_repeat Simple_repeat 1 22 0 2 807 2075 214 74 22 chr3 29195739 29196219 -130403564 - Lx7 LINE L1 -405 7291 6784 2 807 227 288 133 9 chr3 29197579 29197684 -130402099 + B1F SINE Alu 9 126 -23 2 807 567 43 0 0 chr3 29197723 29197793 -130401990 + (TA)n Simple_repeat Simple_repeat 1 70 0 2 807 7805 39 2 0 chr3 29197793 29198992 -130400791 - L1Md_F3 LINE L1 -22 6562 5361 2 807 447 106 0 0 chr3 29200376 29200442 -130399341 + (TTA)n Simple_repeat Simple_repeat 2 67 0 2 807 225 293 52 42 chr3 29200442 29200538 -130399245 - MT2B2 LTR ERVL -283 301 205 2 807 408 292 0 0 chr3 29200452 29200541 -130399242 - B1F2 SINE Alu -16 133 45 2 807 363 23 0 0 chr3 29200541 29200585 -130399198 + (TG)n Simple_repeat Simple_repeat 1 44 0 2 807 322 82 66 0 chr3 29200587 29200648 -130399135 + (CAGAGA)n Simple_repeat Simple_repeat 2 66 0 2 807 397 246 62 109 chr3 29200691 29200773 -130399010 - RSINE1 SINE B4 -43 122 41 2 807 1058 74 12 41 chr3 29200773 29200943 -130398840 + L1Md_F2 LINE L1 6418 6582 0 2 807 397 246 62 109 chr3 29200943 29200988 -130398795 - RSINE1 SINE B4 -125 40 1 2 807 345 313 71 0 chr3 29200988 29201077 -130398706 - B1F2 SINE Alu -39 110 15 2 807 290 345 143 11 chr3 29201355 29201537 -130398246 - L3 LINE CR1 -3468 1021 816 2 807 220 359 180 0 chr3 29201762 29201890 -130397893 - MER5B DNA MER1_type -5 173 23 2 807 260 274 144 19 chr3 29202828 29202932 -130396851 - MER5A1 DNA MER1_type -4 162 46 2 807 24 0 0 0 chr3 29203129 29203153 -130396630 + AT_rich Low_complexity Low_complexity 1 24 0 2 807 514 342 42 38 chr3 29203414 29203703 -130396080 + B4 SINE B4 3 292 0 3 807 186 150 0 0 chr3 29203708 29203748 -130396035 + (CAGAGA)n Simple_repeat Simple_repeat 4 43 0 3 807 230 367 148 0 chr3 29204360 29204488 -130395295 + MIRb SINE MIR 22 168 -100 3 807 25 0 0 0 chr3 29204498 29204523 -130395260 + AT_rich Low_complexity Low_complexity 1 25 0 3 807 192 97 0 0 chr3 29204879 29204910 -130394873 + (T)n Simple_repeat Simple_repeat 1 31 0 3 807 1166 68 0 0 chr3 29204941 29205087 -130394696 - B1_Mm SINE Alu 0 147 2 3 807 261 376 47 57 chr3 29205304 29205496 -130394287 + MER20 DNA MER1_type 30 219 0 3 807 306 332 32 108 chr3 29205556 29205806 -130393977 + MER106A DNA MER1_type 3 233 -3 3 807 224 301 11 78 chr3 29206064 29206154 -130393629 - L2a LINE L2 -101 3325 3242 3 807 215 91 67 22 chr3 29206250 29206295 -130393488 + A-rich Low_complexity Low_complexity 5 51 0 3 807 240 329 119 50 chr3 29206998 29207158 -130392625 - MIRb SINE MIR -97 171 1 3 807 216 111 0 0 chr3 29207961 29207997 -130391786 + (CA)n Simple_repeat Simple_repeat 2 37 0 3 807 2195 219 98 10 chr3 29208786 29209733 -130390050 - Lx9 LINE L1 -2 7642 6545 3 807 25 31 0 0 chr3 29209800 29209832 -130389951 + AT_rich Low_complexity Low_complexity 1 32 0 3 807 1712 221 45 20 chr3 29209876 29210320 -130389463 - Lx2B LINE L1 -157 6843 6389 3 807 23 33 0 0 chr3 29210893 29210923 -130388860 + AT_rich Low_complexity Low_complexity 1 30 0 3 807 21 0 0 0 chr3 29211166 29211187 -130388596 + AT_rich Low_complexity Low_complexity 1 21 0 3 807 219 69 0 0 chr3 29211319 29211348 -130388435 + (TTA)n Simple_repeat Simple_repeat 2 30 0 3 807 418 280 125 42 chr3 29212812 29212980 -130386803 - B3A SINE B2 -16 182 1 3 807 400 279 100 8 chr3 29213189 29213319 -130386464 - B1F SINE Alu -7 142 1 3 807 22 0 0 0 chr3 29213531 29213553 -130386230 + AT_rich Low_complexity Low_complexity 1 22 0 3 807 23 54 0 0 chr3 29213707 29213744 -130386039 + AT_rich Low_complexity Low_complexity 1 37 0 3 807 3499 34 2 0 chr3 29213744 29214157 -130385626 - L1Md_T LINE L1 -2 6580 6167 3 807 38500 17 1 6 chr3 29214289 29220489 -130379294 - L1Md_A LINE L1 -1 6581 416 3 807 486 0 0 0 chr3 29221211 29221265 -130378518 + (TAA)n Simple_repeat Simple_repeat 1 54 0 3 807 185 266 61 30 chr3 29221290 29221356 -130378427 - MIRb SINE MIR -159 109 42 3 807 22 0 0 0 chr3 29222607 29222629 -130377154 + AT_rich Low_complexity Low_complexity 1 22 0 3 807 430 281 37 11 chr3 29222965 29223120 -130376663 + B3A SINE B2 5 162 -36 3 807 399 21 0 0 chr3 29223128 29223176 -130376607 + (CA)n Simple_repeat Simple_repeat 1 48 0 3 807 237 188 0 20 chr3 29223202 29223251 -130376532 + GA-rich Low_complexity Low_complexity 3 50 0 3 807 477 34 0 0 chr3 29223251 29223310 -130376473 + (GGGGA)n Simple_repeat Simple_repeat 5 63 0 3 807 1224 101 11 0 chr3 29223310 29223499 -130376284 - L1_Mus3 LINE L1 -543 6095 5905 3 807 254 119 0 45 chr3 29224337 29224381 -130375402 + MT2A LTR ERVL 1 42 -491 3 807 319 104 21 0 chr3 29224398 29224446 -130375337 - HAL1-3A_ME LINE L1 -835 2023 1975 3 807 297 339 92 60 chr3 29225112 29225429 -130374354 - ORR1E LTR MaLR -26 333 7 3 807 1437 35 0 0 chr3 29226198 29226603 -130373180 + (TG)n Simple_repeat Simple_repeat 1 405 0 3 807 942 300 48 10 chr3 29226607 29227021 -130372762 - Lx8 LINE L1 -414 7059 6630 3 807 997 276 88 3 chr3 29227062 29227404 -130372379 - Lx8 LINE L1 -928 6545 6175 3 807 212 192 38 19 chr3 29227420 29227473 -130372310 + C-rich Low_complexity Low_complexity 5 58 0 3 807 266 271 0 0 chr3 29227513 29227572 -130372211 - B4 SINE B4 -233 59 1 3 807 201 74 0 0 chr3 29228096 29228123 -130371660 + (TG)n Simple_repeat Simple_repeat 1 27 0 3 807 406 270 80 0 chr3 29228124 29228224 -130371559 - RSINE1 SINE B4 -29 136 29 3 807 231 36 0 0 chr3 29228644 29228672 -130371111 + (TAAA)n Simple_repeat Simple_repeat 1 28 0 3 807 524 287 141 35 chr3 29228740 29228910 -130370873 + B3A SINE B2 6 193 -5 3 808 376 257 195 12 chr3 29229441 29229610 -130370173 - B3 SINE B2 -15 201 2 3 808 243 184 78 13 chr3 29230712 29230789 -130368994 - LTR37A LTR ERV1 -81 345 264 3 808 1014 128 17 6 chr3 29231272 29231452 -130368331 + L1_Mus3 LINE L1 6425 6606 -32 3 808 737 316 86 38 chr3 29231453 29231766 -130368017 - ORR1E LTR MaLR -30 329 2 3 808 218 160 20 0 chr3 29231880 29231930 -130367853 + GA-rich Low_complexity Low_complexity 2 52 0 3 808 7714 98 46 4 chr3 29231976 29233923 -130365860 - L1_Mus3 LINE L1 -7 6631 4601 3 808 316 236 0 0 chr3 29233955 29234027 -130365756 - L1VL1 LINE L1 -6342 80 9 3 808 227 314 124 98 chr3 29234027 29234291 -130365492 - RSINE1 SINE B4 -20 272 4 3 808 210 400 20 0 chr3 29235782 29235882 -130363901 + RSINE1 SINE B4 3 104 -61 3 808 300 43 0 0 chr3 29236042 29236089 -130363694 + L1Md_T LINE L1 6536 6582 0 3 808 251 104 21 0 chr3 29236550 29236598 -130363185 + (CAAA)n Simple_repeat Simple_repeat 3 51 0 3 808 213 295 16 16 chr3 29238363 29238425 -130361358 + ID_B1 SINE B4 84 145 -79 3 808 210 71 0 0 chr3 29238656 29238684 -130361099 + (TTTTC)n Simple_repeat Simple_repeat 2 29 0 3 808 1168 55 14 0 chr3 29238686 29238831 -130360952 - B1_Mus2 SINE Alu 0 147 1 3 808 427 331 40 17 chr3 29240600 29240775 -130359008 + MER104 DNA Tc2 3 181 0 3 808 357 319 0 0 chr3 29241579 29241673 -130358110 + (CA)n Simple_repeat Simple_repeat 2 95 0 3 808 189 0 0 0 chr3 29241972 29241993 -130357790 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 3 808 279 0 0 0 chr3 29242657 29242688 -130357095 + (TG)n Simple_repeat Simple_repeat 2 32 0 3 808 555 237 44 0 chr3 29243206 29243320 -130356463 - B3A SINE B2 -79 119 1 3 808 511 334 137 61 chr3 29243549 29243893 -130355890 - MLT1G1 LTR MaLR -209 370 1 3 808 911 307 3 21 chr3 29244110 29244396 -130355387 + Lx6 LINE L1 7154 7434 -26 3 808 805 305 67 42 chr3 29245444 29245713 -130354070 - ORR1E LTR MaLR -77 302 1 3 808 189 0 0 0 chr3 29246179 29246200 -130353583 + (CAA)n Simple_repeat Simple_repeat 1 21 0 3 808 206 53 79 0 chr3 29246679 29246717 -130353066 + (CAAAAA)n Simple_repeat Simple_repeat 3 43 0 3 808 216 0 0 0 chr3 29248147 29248171 -130351612 + (TGAA)n Simple_repeat Simple_repeat 4 27 0 3 808 252 325 52 0 chr3 29249589 29249666 -130350117 + ID4_ SINE ID 3 83 0 3 808 263 344 32 24 chr3 29249952 29250077 -130349706 - L2 LINE L2 -552 2867 2742 3 808 639 0 0 0 chr3 29250941 29251012 -130348771 + (GA)n Simple_repeat Simple_repeat 1 71 0 3 808 629 93 9 0 chr3 29251344 29251451 -130348332 + (TG)n Simple_repeat Simple_repeat 2 109 0 3 808 439 277 85 55 chr3 29251469 29251668 -130348115 - B4A SINE B4 -84 208 4 3 808 2668 222 56 62 chr3 29251689 29252251 -130347532 + Lx7 LINE L1 6801 7381 -315 3 808 486 0 0 0 chr3 29252251 29252305 -130347478 + (TA)n Simple_repeat Simple_repeat 1 54 0 3 808 2668 222 56 62 chr3 29252305 29252640 -130347143 + Lx7 LINE L1 7382 7691 -5 3 808 3316 261 122 20 chr3 29253142 29254595 -130345188 - Lx7 LINE L1 -331 7365 5764 3 808 1898 220 19 34 chr3 29254593 29255120 -130344663 - Lx7 LINE L1 -594 5286 4768 3 808 198 0 0 0 chr3 29256874 29256896 -130342887 + (T)n Simple_repeat Simple_repeat 1 22 0 3 808 262 257 0 0 chr3 29257565 29257635 -130342148 + (CA)n Simple_repeat Simple_repeat 2 71 0 3 808 253 262 23 45 chr3 29258661 29258749 -130341034 + B4 SINE B4 6 91 -201 3 808 296 209 117 41 chr3 29258759 29258904 -130340879 - Lx7 LINE L1 -5 7691 7536 3 808 539 94 10 0 chr3 29259103 29259199 -130340584 + (CA)n Simple_repeat Simple_repeat 2 98 0 3 808 7011 97 15 2 chr3 29261363 29262832 -130336951 + L1_Mus3 LINE L1 5120 6609 -29 3 808 372 235 86 20 chr3 29263388 29263540 -130336243 - L1M4 LINE L1 -793 5353 5192 3 808 21 0 0 0 chr3 29264507 29264528 -130335255 + AT_rich Low_complexity Low_complexity 1 21 0 3 808 344 164 0 0 chr3 29265475 29265530 -130334253 - MER112 DNA MER1_type -205 56 2 3 808 324 0 0 0 chr3 29267121 29267157 -130332626 + (TAA)n Simple_repeat Simple_repeat 2 37 0 3 808 298 267 0 0 chr3 29267388 29267463 -130332320 - B4A SINE B4 -2 290 216 3 808 375 350 0 20 chr3 29267694 29267840 -130331943 - RSINE1 SINE B4 -14 151 9 3 808 320 385 74 0 chr3 29267873 29268021 -130331762 - RSINE1 SINE B4 0 165 7 3 808 608 342 10 20 chr3 29268025 29268228 -130331555 - B4A SINE B4 -89 203 3 3 808 2614 54 0 9 chr3 29269795 29270130 -130329653 - L1Md_F3 LINE L1 -13 6571 6240 3 808 278 326 20 39 chr3 29270718 29270820 -130328963 - AmnSINE1 SINE SINE -473 102 3 3 808 392 261 11 0 chr3 29270733 29270821 -130328962 - 5S rRNA rRNA -31 90 2 3 808 917 59 29 0 chr3 29271402 29271538 -130328245 - L1Md_F2 LINE L1 0 6582 6443 3 808 531 0 0 0 chr3 29271737 29271796 -130327987 + (GA)n Simple_repeat Simple_repeat 1 59 0 3 808 237 337 0 0 chr3 29271800 29271889 -130327894 + GA-rich Low_complexity Low_complexity 3 91 0 3 808 14459 55 5 0 chr3 29272364 29275003 -130324780 - L1Md_F2 LINE L1 0 6582 3949 3 808 266 300 85 0 chr3 29275532 29275662 -130324121 - L1MA4A LINE L1 -372 5931 5791 3 808 261 319 18 0 chr3 29275671 29275784 -130323999 - L1M3 LINE L1 -518 5653 5539 3 808 260 307 13 13 chr3 29276299 29276375 -130323408 + ID4 SINE ID 1 76 -7 3 808 714 152 0 0 chr3 29277204 29277329 -130322454 + GA-rich Low_complexity Low_complexity 2 126 0 3 808 564 287 104 18 chr3 29277463 29277800 -130321983 - ERVL-int LTR ERVL -514 5243 4838 4 808 192 125 0 0 chr3 29277844 29277876 -130321907 + (CA)n Simple_repeat Simple_repeat 1 32 0 4 808 207 88 0 0 chr3 29281024 29281058 -130318725 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 4 808 752 316 29 47 chr3 29281058 29281337 -130318446 + B4A SINE B4 1 274 -18 4 808 208 250 41 14 chr3 29281355 29281428 -130318355 + (CA)n Simple_repeat Simple_repeat 1 75 0 4 808 24 0 0 0 chr3 29281537 29281561 -130318222 + AT_rich Low_complexity Low_complexity 1 24 0 4 808 296 394 0 0 chr3 29281561 29281655 -130318128 + PB1D10 SINE Alu 3 96 -21 4 808 278 233 12 0 chr3 29282282 29282368 -130317415 + (TG)n Simple_repeat Simple_repeat 2 88 0 4 808 625 274 156 36 chr3 29282411 29282661 -130317122 - B4A SINE B4 -12 280 1 4 808 401 320 39 39 chr3 29282925 29283078 -130316705 + B4 SINE B4 5 157 -135 4 808 183 130 0 53 chr3 29283456 29283513 -130316270 + CT-rich Low_complexity Low_complexity 1 54 0 4 808 1118 84 0 0 chr3 29283732 29283874 -130315909 + B1_Mus1 SINE Alu 1 142 -6 4 808 21 0 0 0 chr3 29284865 29284886 -130314897 + AT_rich Low_complexity Low_complexity 1 21 0 4 808 225 224 0 0 chr3 29284974 29285032 -130314751 + (CGTG)n Simple_repeat Simple_repeat 1 58 0 4 808 3409 46 0 22 chr3 29286261 29286705 -130313078 - L1Md_F2 LINE L1 0 6582 6149 4 808 682 79 0 0 chr3 29286706 29286795 -130312988 + L1Md_F2 LINE L1 6050 6138 -444 4 808 244 351 57 26 chr3 29287305 29287498 -130312285 - MIRb SINE MIR -13 255 57 4 808 423 0 0 0 chr3 29288364 29288411 -130311372 + (TG)n Simple_repeat Simple_repeat 2 48 0 4 808 278 87 22 0 chr3 29288524 29288570 -130311213 + (TG)n Simple_repeat Simple_repeat 1 47 0 4 808 386 318 52 29 chr3 29288689 29288825 -130310958 - B4A SINE B4 -147 145 7 4 808 560 270 82 18 chr3 29288919 29289178 -130310605 - L1MC1 LINE L1 -58 6275 6001 4 808 370 0 0 0 chr3 29289865 29289910 -130309873 + L1Md_F3 LINE L1 5754 5798 -786 4 808 6464 60 5 4 chr3 29289935 29290766 -130309017 + L1Md_F2 LINE L1 5751 6582 0 4 808 238 246 33 0 chr3 29291657 29291718 -130308065 + CT-rich Low_complexity Low_complexity 3 65 0 4 808 3063 26 0 0 chr3 29291880 29292226 -130307557 + ORR1A0 LTR MaLR 1 346 0 4 808 3069 57 2 0 chr3 29292239 29292646 -130307137 + L1Md_F2 LINE L1 5179 5586 -297 4 808 7619 70 4 5 chr3 29292647 29293643 -130306140 + L1Md_F2 LINE L1 5588 6582 0 4 808 1615 296 79 33 chr3 29294375 29295043 -130304740 - Lx9 LINE L1 -459 7185 6487 4 808 342 67 0 0 chr3 29295084 29295129 -130304654 + (CA)n Simple_repeat Simple_repeat 1 45 0 4 808 243 170 0 0 chr3 29295682 29295729 -130304054 + CT-rich Low_complexity Low_complexity 2 48 0 4 808 207 0 0 0 chr3 29296360 29296383 -130303400 + (A)n Simple_repeat Simple_repeat 1 23 0 4 808 303 329 25 0 chr3 29296878 29296957 -130302826 - Charlie12 DNA MER1_type -2792 81 1 4 808 251 300 70 0 chr3 29296974 29296986 -130302797 - LTR81C LTR ERV1? -167 986 880 4 808 266 273 57 0 chr3 29296986 29297074 -130302709 - MamGypLTR2 LTR Gypsy -203 986 894 4 808 1405 259 64 10 chr3 29297569 29297959 -130301824 + MT2A LTR ERVL 13 423 -110 4 808 538 272 11 90 chr3 29298835 29299013 -130300770 + RSINE1 SINE B4 2 165 0 4 808 287 247 106 50 chr3 29299019 29299198 -130300585 - RLTR22_Mur LTR ERVK -396 1452 1264 4 808 326 350 0 22 chr3 29299229 29299455 -130300328 + (CATA)n Simple_repeat Simple_repeat 1 221 0 4 808 451 352 0 0 chr3 29299363 29299542 -130300241 + (CA)n Simple_repeat Simple_repeat 1 179 0 4 808 474 260 22 34 chr3 29299460 29299639 -130300144 + (CATATA)n Simple_repeat Simple_repeat 2 178 0 4 808 22 35 0 0 chr3 29299668 29299697 -130300086 + AT_rich Low_complexity Low_complexity 1 29 0 4 808 1725 40 0 13 chr3 29300175 29300406 -130299377 - L1_Mus1 LINE L1 -602 5965 5738 4 808 5131 60 0 0 chr3 29300406 29301037 -130298746 + L1_Mus1 LINE L1 5937 6567 0 4 808 586 348 22 36 chr3 29301976 29302083 -130297700 - Lx9 LINE L1 -237 7407 7306 4 808 1166 64 146 0 chr3 29302083 29302254 -130297529 - L1_Mus2 LINE L1 -1 6565 6370 4 808 586 348 22 36 chr3 29302254 29302507 -130297276 - Lx9 LINE L1 -339 7305 7052 4 808 243 0 0 0 chr3 29302568 29302595 -130297188 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 4 808 202 253 28 0 chr3 29302629 29302678 -130297105 + L2b LINE L2 3303 3398 -28 4 808 351 0 0 0 chr3 29303381 29303420 -130296363 + (TG)n Simple_repeat Simple_repeat 1 39 0 4 808 485 337 69 25 chr3 29303448 29303652 -130296131 - B4A SINE B4 -8 284 72 4 808 4771 47 0 2 chr3 29304542 29305120 -130294663 - L1Md_F2 LINE L1 -13 6569 5993 4 808 6234 83 6 0 chr3 29305484 29306360 -130293423 - L1_Mus1 LINE L1 0 6567 5687 4 808 201 74 0 0 chr3 29306467 29306494 -130293289 + (TG)n Simple_repeat Simple_repeat 2 28 0 4 808 984 324 58 50 chr3 29308640 29309104 -130290679 + MLT1D LTR MaLR 36 503 -2 4 808 270 0 0 0 chr3 29309822 29309852 -130289931 + (CTG)n Simple_repeat Simple_repeat 2 31 0 4 808 448 359 85 52 chr3 29309942 29310212 -130289571 - MLT1H LTR MaLR -229 320 42 4 808 180 329 104 37 chr3 29310659 29310823 -130288960 - MER5B DNA MER1_type -2 176 2 4 808 322 256 126 73 chr3 29311639 29311789 -130287994 + B3 SINE B2 1 170 -46 4 808 22 56 0 0 chr3 29311856 29311892 -130287891 + AT_rich Low_complexity Low_complexity 1 36 0 4 808 496 270 60 90 chr3 29312669 29312836 -130286947 + RSINE1 SINE B4 4 165 0 4 808 989 32 8 0 chr3 29313448 29313573 -130286210 + (TCTCCC)n Simple_repeat Simple_repeat 1 126 0 4 808 432 0 0 0 chr3 29313590 29313638 -130286145 + (TG)n Simple_repeat Simple_repeat 2 49 0 4 808 418 197 0 0 chr3 29314724 29314795 -130284988 + PB1D10 SINE Alu 26 96 -21 4 808 717 292 68 11 chr3 29316041 29316304 -130283479 + B4 SINE B4 1 278 -14 4 808 549 294 33 6 chr3 29317646 29317819 -130281964 - MLT1A0 LTR MaLR -3 405 204 4 808 525 119 0 0 chr3 29318625 29318726 -130281057 + (TG)n Simple_repeat Simple_repeat 2 102 0 4 808 203 170 21 0 chr3 29321762 29321809 -130277974 + CT-rich Low_complexity Low_complexity 1 48 0 4 808 554 252 80 53 chr3 29321961 29322112 -130277671 - B4 SINE B4 -21 271 117 4 808 259 188 15 15 chr3 29322131 29322153 -130277630 + L1_Mus4 LINE L1 6098 6119 -517 4 808 3239 100 33 12 chr3 29322153 29322638 -130277145 - Lx LINE L1 -5 6649 6155 4 808 278 143 0 0 chr3 29322638 29322680 -130277103 + Lx LINE L1 6121 6162 -492 4 808 257 355 21 0 chr3 29322680 29322773 -130277010 - B4 SINE B4 -196 96 2 4 808 2195 151 28 18 chr3 29322949 29323348 -130276435 - Lx3B LINE L1 -4 6969 6567 4 808 1600 271 151 45 chr3 29323419 29324133 -130275650 + Lx8 LINE L1 6619 7408 -65 4 808 21 0 0 0 chr3 29324155 29324176 -130275607 + AT_rich Low_complexity Low_complexity 1 21 0 4 808 484 284 0 25 chr3 29324861 29324980 -130274803 + B3A SINE B2 4 119 -79 4 808 335 62 0 59 chr3 29324996 29325064 -130274719 + L1_Mus3 LINE L1 6572 6635 -3 4 808 423 261 33 16 chr3 29325375 29325496 -130274287 - RMER15 LTR ERVL -48 527 405 4 808 684 311 0 0 chr3 29325839 29326003 -130273780 - B3A SINE B2 -33 165 2 4 808 414 0 0 0 chr3 29326329 29326375 -130273408 + (TG)n Simple_repeat Simple_repeat 1 46 0 4 808 629 236 160 45 chr3 29326464 29326664 -130273119 - ORR1D2 LTR MaLR -4 366 144 4 808 271 150 35 59 chr3 29326667 29326752 -130273031 + T-rich Low_complexity Low_complexity 4 86 0 4 808 4894 127 13 7 chr3 29326753 29327499 -130272284 - Lx4A LINE L1 -3 7055 6305 4 808 260 154 0 0 chr3 29327506 29327545 -130272238 - ORR1D2 LTR MaLR -229 155 117 4 808 1342 200 65 35 chr3 29327545 29327835 -130271948 + RMER13B LTR ERVK 1 299 -609 4 808 2231 216 70 39 chr3 29327919 29328491 -130271292 + RMER13B LTR ERVK 310 899 -9 4 808 293 263 125 10 chr3 29328505 29328601 -130271182 - ORR1D2 LTR MaLR -259 111 5 4 808 850 292 36 70 chr3 29328689 29328991 -130270792 + B4 SINE B4 1 292 0 4 808 235 300 67 39 chr3 29329121 29329225 -130270558 - L2b LINE L2 0 3375 3269 4 808 921 281 50 21 chr3 29330264 29330544 -130269239 - B4A SINE B4 -2 290 3 4 808 205 186 0 0 chr3 29331595 29331638 -130268145 + T-rich Low_complexity Low_complexity 3 45 0 4 808 307 163 23 47 chr3 29333270 29333399 -130266384 + (TCTCTG)n Simple_repeat Simple_repeat 1 126 0 4 808 22 35 0 0 chr3 29334105 29334134 -130265649 + AT_rich Low_complexity Low_complexity 1 29 0 4 808 338 240 0 77 chr3 29334319 29334423 -130265360 - HAL1-3A_ME LINE L1 -788 2070 1975 4 808 384 308 8 0 chr3 29334423 29334543 -130265240 + (TG)n Simple_repeat Simple_repeat 2 122 0 4 808 4246 168 89 44 chr3 29334544 29335410 -130264373 - RLTR25A LTR ERVK 0 1028 136 4 808 261 0 0 0 chr3 29335410 29335439 -130264344 + (TA)n Simple_repeat Simple_repeat 1 29 0 4 808 4246 172 89 45 chr3 29335439 29335576 -130264207 - RLTR25A LTR ERVK -892 136 1 4 808 316 261 0 48 chr3 29335612 29335801 -130263982 + (TG)n Simple_repeat Simple_repeat 1 180 0 4 808 348 256 99 92 chr3 29335958 29336100 -130263683 - B4A SINE B4 -148 144 2 4 808 4030 81 20 7 chr3 29336641 29337198 -130262585 - LTRIS2 LTR ERV1 0 564 1 4 808 27 29 0 0 chr3 29337583 29337617 -130262166 + AT_rich Low_complexity Low_complexity 1 34 0 4 808 966 323 45 87 chr3 29339127 29339643 -130260140 + MLT2B2 LTR ERVL 22 515 0 4 808 262 364 27 48 chr3 29340113 29340260 -130259523 - RSINE1 SINE B4 0 165 22 4 808 21 0 0 0 chr3 29340877 29340898 -130258885 + AT_rich Low_complexity Low_complexity 1 21 0 4 808 1959 189 74 28 chr3 29342306 29342808 -130256975 - RLTR11A2 LTR ERVK -2 525 1 4 808 207 154 0 37 chr3 29342869 29342923 -130256860 + (TTTG)n Simple_repeat Simple_repeat 2 53 0 4 808 329 254 0 0 chr3 29343192 29343255 -130256528 + ID4_ SINE ID 6 68 -15 4 808 264 100 0 0 chr3 29343255 29343295 -130256488 + (TC)n Simple_repeat Simple_repeat 1 40 0 4 808 342 67 0 0 chr3 29343295 29343340 -130256443 + (TA)n Simple_repeat Simple_repeat 2 46 0 5 808 413 313 79 65 chr3 29344331 29344560 -130255223 - B4A SINE B4 -56 236 5 5 808 432 0 0 0 chr3 29344805 29344853 -130254930 + (TG)n Simple_repeat Simple_repeat 1 48 0 5 808 335 289 31 69 chr3 29345737 29345897 -130253886 + B4A SINE B4 139 292 0 5 808 459 0 0 0 chr3 29346228 29346279 -130253504 + (TCTA)n Simple_repeat Simple_repeat 2 52 0 5 808 310 237 97 142 chr3 29346286 29346399 -130253384 - L2b LINE L2 -1 3386 3279 5 808 204 40 0 0 chr3 29346715 29346740 -130253043 + (TG)n Simple_repeat Simple_repeat 2 26 0 5 808 593 61 0 12 chr3 29346898 29346981 -130252802 + (GAAAA)n Simple_repeat Simple_repeat 2 83 0 5 808 21 36 0 0 chr3 29347406 29347434 -130252349 + AT_rich Low_complexity Low_complexity 1 28 0 5 808 183 80 0 0 chr3 29348936 29348961 -130250822 + (CA)n Simple_repeat Simple_repeat 2 26 0 5 808 225 0 0 0 chr3 29348961 29348986 -130250797 + (GA)n Simple_repeat Simple_repeat 1 25 0 5 808 895 115 0 13 chr3 29348986 29349136 -130250647 + (GAA)n Simple_repeat Simple_repeat 3 150 0 5 808 4247 214 72 10 chr3 29349345 29350341 -130249442 - Lx6 LINE L1 -170 7290 6233 5 808 900 162 0 0 chr3 29350800 29350967 -130248816 + CT-rich Low_complexity Low_complexity 2 168 0 5 808 274 98 39 0 chr3 29351131 29351182 -130248601 + (GGGAGA)n Simple_repeat Simple_repeat 6 58 0 5 808 210 321 0 12 chr3 29351271 29351356 -130248427 - MIRb SINE MIR -4 258 175 5 808 1638 236 41 0 chr3 29351362 29351756 -130248027 - Lx3C LINE L1 -2 6974 6565 5 808 374 141 0 27 chr3 29351920 29351993 -130247790 + G-rich Low_complexity Low_complexity 4 74 0 5 808 4662 160 62 23 chr3 29351999 29353570 -130246213 - Lx3C LINE L1 -425 6551 4916 5 808 7563 174 35 12 chr3 29353558 29354397 -130245386 - Lx3C LINE L1 -2988 2898 2045 5 808 198 0 0 0 chr3 29354397 29354419 -130245364 + (TG)n Simple_repeat Simple_repeat 2 23 0 5 808 7563 174 35 12 chr3 29354419 29355205 -130244578 - Lx3C LINE L1 -3842 2044 1236 5 808 6513 102 22 2 chr3 29355200 29356189 -130243594 - L1_Mus3 LINE L1 -5 6633 5625 5 808 1465 216 11 0 chr3 29356188 29356549 -130243234 - Lx3C LINE L1 -5736 1248 884 5 808 324 260 8 8 chr3 29357105 29357237 -130242546 - Lx9 LINE L1 -15 7629 7498 5 808 751 284 10 83 chr3 29357784 29358084 -130241699 - B4 SINE B4 -14 278 1 5 808 1388 249 82 18 chr3 29359221 29359564 -130240219 - MTD LTR MaLR -1 418 54 5 808 431 305 0 23 chr3 29359937 29360068 -130239715 + ID_B1 SINE B4 96 223 -1 5 809 36326 30 0 0 chr3 29360390 29366795 -130232988 - L1Md_T LINE L1 0 6585 82 5 809 306 316 117 29 chr3 29366947 29367084 -130232699 - HAL1-3A_ME LINE L1 -426 2432 2284 5 809 351 0 0 0 chr3 29367383 29367422 -130232361 + (CA)n Simple_repeat Simple_repeat 1 39 0 5 809 298 79 66 0 chr3 29367422 29367498 -130232285 + (CAAAA)n Simple_repeat Simple_repeat 1 81 0 5 809 588 274 55 51 chr3 29367498 29367594 -130232189 - RMER15 LTR ERVL -46 529 431 5 809 989 81 0 7 chr3 29367594 29367744 -130232039 + L1Md_F2 LINE L1 6433 6581 -1 5 809 588 274 55 51 chr3 29367744 29367882 -130231901 - RMER15 LTR ERVL -145 430 294 5 809 510 29 58 0 chr3 29368686 29368755 -130231028 - L1_Mus4 LINE L1 -941 5695 5623 5 809 936 323 153 27 chr3 29368966 29369950 -130229833 - Lx8 LINE L1 -4 7469 6330 5 809 422 195 111 70 chr3 29370960 29371159 -130228624 + RLTR15 LTR ERVK 1 207 -152 5 809 378 0 0 0 chr3 29371446 29371488 -130228295 + (TA)n Simple_repeat Simple_repeat 1 42 0 5 809 190 29 0 81 chr3 29372289 29372326 -130227457 + (TTTTTG)n Simple_repeat Simple_repeat 1 34 0 5 809 1115 307 21 21 chr3 29372886 29373172 -130226611 + B4 SINE B4 3 288 -4 5 809 237 229 0 32 chr3 29373177 29373240 -130226543 + (CATATA)n Simple_repeat Simple_repeat 2 62 0 5 809 1716 174 16 88 chr3 29373249 29373622 -130226161 - ORR1B1 LTR MaLR -8 386 41 5 809 279 0 0 0 chr3 29373624 29373655 -130226128 + (CA)n Simple_repeat Simple_repeat 2 32 0 5 809 23 33 0 0 chr3 29373710 29373740 -130226043 + AT_rich Low_complexity Low_complexity 1 30 0 5 809 186 191 0 0 chr3 29374946 29374993 -130224790 + (TGAA)n Simple_repeat Simple_repeat 2 48 0 5 809 309 182 133 22 chr3 29376060 29376150 -130223633 + LTR37B LTR ERV1 364 463 -5 5 809 557 236 24 16 chr3 29376547 29376672 -130223111 - ORR1B1-int LTR MaLR -979 391 266 5 809 385 152 30 0 chr3 29376750 29376816 -130222967 - ORR1B1 LTR MaLR 0 370 303 5 809 938 256 54 54 chr3 29376822 29377153 -130222630 - RLTR28B LTR ERVL -148 333 3 5 809 27 0 0 0 chr3 29377460 29377487 -130222296 + AT_rich Low_complexity Low_complexity 1 27 0 5 809 263 312 0 72 chr3 29377601 29377684 -130222099 + PB1 SINE Alu 24 100 -27 5 809 962 357 3 14 chr3 29377709 29377996 -130221787 + B4A SINE B4 1 284 -8 5 809 414 85 0 0 chr3 29378502 29378561 -130221222 + (TG)n Simple_repeat Simple_repeat 1 59 0 5 809 318 26 0 0 chr3 29378713 29378752 -130221031 + (TG)n Simple_repeat Simple_repeat 1 39 0 5 809 387 295 68 99 chr3 29379221 29379443 -130220340 + LTR48B LTR ERV1 372 688 -99 5 809 9017 55 1 1 chr3 29379991 29381182 -130218601 - L1_Mm LINE L1 -130 5753 4563 5 809 11131 40 0 0 chr3 29381177 29382621 -130217162 + L1_Mm LINE L1 3113 4556 -1327 5 809 4187 87 0 5 chr3 29382760 29383327 -130216456 + L1_Mus2 LINE L1 6001 6564 -2 5 809 941 134 6 52 chr3 29384495 29384668 -130215115 - URR1A DNA MER1_type 0 226 62 5 809 1529 248 56 19 chr3 29385254 29385611 -130214172 - MTD LTR MaLR -31 388 17 5 809 327 104 0 0 chr3 29385611 29385659 -130214124 + (CAG)n Simple_repeat Simple_repeat 3 50 0 5 809 1529 248 56 19 chr3 29385659 29385675 -130214108 - MTD LTR MaLR -403 16 1 5 809 189 74 0 0 chr3 29386183 29386210 -130213573 + (CA)n Simple_repeat Simple_repeat 2 28 0 5 809 732 249 53 32 chr3 29386313 29386500 -130213283 - B3A SINE B2 -4 194 4 5 809 291 28 0 0 chr3 29386508 29386544 -130213239 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 5 809 36660 30 1 7 chr3 29386547 29392724 -130207059 - L1Md_T LINE L1 0 6582 445 5 809 3110 37 42 0 chr3 29392930 29393310 -130206473 + MTA_Mm LTR MaLR 1 396 0 5 809 401 308 83 42 chr3 29394980 29395197 -130204586 + RMER15 LTR ERVL 347 572 -3 5 809 2315 53 43 0 chr3 29396628 29396932 -130202851 + L1Md_A LINE L1 6264 6580 -2 5 809 218 340 94 13 chr3 29399255 29399404 -130200379 - MIR SINE MIR 0 262 102 5 809 828 71 0 0 chr3 29399784 29399896 -130199887 + (GGA)n Simple_repeat Simple_repeat 3 114 0 5 809 263 336 69 0 chr3 29399935 29400051 -130199732 + MLT1F1 LTR MaLR 428 551 -18 5 809 1252 34 0 0 chr3 29400074 29400221 -130199562 + B1_Mus2 SINE Alu 1 147 0 5 809 387 0 0 0 chr3 29400336 29400379 -130199404 + (CA)n Simple_repeat Simple_repeat 2 44 0 5 809 207 0 0 0 chr3 29400379 29400401 -130199382 + (GA)n Simple_repeat Simple_repeat 2 24 0 5 809 374 190 26 8 chr3 29400566 29400683 -130199100 + CT-rich Low_complexity Low_complexity 3 121 0 5 809 444 191 0 0 chr3 29401145 29401234 -130198549 + (TA)n Simple_repeat Simple_repeat 1 89 0 5 809 706 200 189 19 chr3 29401712 29401962 -130197821 - RMER13B LTR ERVK -314 328 6 5 809 461 114 34 26 chr3 29403734 29403851 -130195932 + (TA)n Simple_repeat Simple_repeat 2 119 0 5 809 31 0 0 0 chr3 29404086 29404117 -130195666 + AT_rich Low_complexity Low_complexity 1 31 0 5 809 726 285 17 17 chr3 29404157 29404332 -130195451 - B3A SINE B2 -15 183 9 5 809 22 0 0 0 chr3 29404423 29404445 -130195338 + AT_rich Low_complexity Low_complexity 1 22 0 5 809 686 335 75 0 chr3 29405319 29405546 -130194237 + B4A SINE B4 49 292 0 5 809 501 296 140 34 chr3 29405796 29405858 -130193925 + L1MC3 LINE L1 7257 7344 -441 5 809 2614 119 29 25 chr3 29405858 29406307 -130193476 - RLTR11B LTR ERVK 0 453 3 5 809 501 296 140 34 chr3 29406307 29406657 -130193126 + L1MC3 LINE L1 7345 7713 -72 5 809 23 0 0 0 chr3 29406759 29406782 -130193001 + AT_rich Low_complexity Low_complexity 1 23 0 5 809 235 277 88 0 chr3 29407024 29407161 -130192622 + L1ME3B LINE L1 1886 2034 -4208 5 809 463 318 102 44 chr3 29407713 29408006 -130191777 + L1ME3B LINE L1 2693 3002 -3144 5 809 421 330 129 85 chr3 29408164 29408621 -130191162 + MLT1H1 LTR MaLR 60 536 -19 5 809 1324 181 80 45 chr3 29408874 29409163 -130190620 + ORR1C2 LTR MaLR 86 384 0 5 809 594 131 41 0 chr3 29409208 29409353 -130190430 + (TAGA)n Simple_repeat Simple_repeat 3 153 0 5 809 29 28 0 0 chr3 29409460 29409496 -130190287 + AT_rich Low_complexity Low_complexity 1 36 0 5 809 429 20 0 0 chr3 29409698 29409748 -130190035 + (TA)n Simple_repeat Simple_repeat 2 51 0 5 809 324 314 110 60 chr3 29409805 29409871 -130189912 + L1ME3B LINE L1 3507 3574 -2572 5 809 1863 72 11 4 chr3 29409871 29410135 -130189648 + L1_Mus3 LINE L1 6367 6632 -6 5 809 324 314 110 60 chr3 29410135 29410369 -130189414 + L1ME3B LINE L1 3575 3822 -2324 5 809 411 340 66 26 chr3 29410695 29411197 -130188586 + L1ME3B LINE L1 5364 5885 -355 5 809 366 23 0 0 chr3 29411207 29411250 -130188533 + (CA)n Simple_repeat Simple_repeat 2 44 0 5 809 216 111 0 0 chr3 29411325 29411361 -130188422 + (A)n Simple_repeat Simple_repeat 1 36 0 5 809 214 306 32 0 chr3 29411459 29411521 -130188262 + ID4 SINE ID 5 68 -15 5 809 246 213 0 0 chr3 29412609 29412656 -130187127 + (CA)n Simple_repeat Simple_repeat 2 48 0 5 809 559 225 54 52 chr3 29413580 29413762 -130186021 + MIRb SINE MIR 37 223 -45 5 809 186 43 0 0 chr3 29413935 29413958 -130185825 + (TTTTTA)n Simple_repeat Simple_repeat 1 23 0 5 809 190 164 12 193 chr3 29414229 29414312 -130185471 + L3 LINE CR1 1054 1121 -3368 5 809 438 259 64 58 chr3 29415076 29415231 -130184552 - RMER5 LTR ERV1 -15 519 364 5 809 1005 235 61 49 chr3 29415231 29415699 -130184084 + RLTR20C LTR ERVK 1 551 0 5 809 286 175 15 45 chr3 29415761 29415827 -130183956 - RLTR20A1 LTR ERVK -387 164 101 5 809 186 337 66 22 chr3 29416003 29416094 -130183689 + MIRb SINE MIR 72 166 -102 5 809 423 38 0 0 chr3 29416183 29416236 -130183547 + (TG)n Simple_repeat Simple_repeat 2 54 0 5 809 497 175 10 0 chr3 29417362 29417465 -130182318 + (TA)n Simple_repeat Simple_repeat 2 105 0 5 809 441 274 58 15 chr3 29417549 29417686 -130182097 + Lx9 LINE L1 7138 7280 -364 5 809 297 286 8 8 chr3 29417726 29417853 -130181930 + Lx9 LINE L1 7361 7487 -157 5 809 33850 36 0 0 chr3 29417926 29423141 -130176642 + L1Md_T LINE L1 278 5589 -297 5 809 9010 7 0 0 chr3 29423141 29424137 -130175646 + L1Md_T LINE L1 5590 6585 0 5 809 31 44 0 0 chr3 29424187 29424232 -130175551 + AT_rich Low_complexity Low_complexity 1 45 0 6 809 1624 191 52 20 chr3 29424318 29424666 -130175117 + RLTR15 LTR ERVK 1 359 0 6 809 461 121 50 10 chr3 29425544 29425644 -130174139 + L1_Mus3 LINE L1 6523 6626 -12 6 809 421 372 31 62 chr3 29426026 29426381 -130173402 - L1MB8 LINE L1 -7 6171 5828 6 809 232 320 99 10 chr3 29426393 29426494 -130173289 - PB1D9 SINE Alu -9 111 2 6 809 25 31 0 0 chr3 29426505 29426537 -130173246 + AT_rich Low_complexity Low_complexity 1 32 0 6 809 400 151 439 0 chr3 29427047 29427190 -130172593 - Lx9 LINE L1 -12 7632 7427 6 809 619 207 0 38 chr3 29427854 29428040 -130171743 + (TA)n Simple_repeat Simple_repeat 1 179 0 6 809 189 0 0 0 chr3 29428041 29428062 -130171721 + (TG)n Simple_repeat Simple_repeat 1 21 0 6 809 840 279 5 10 chr3 29428683 29428889 -130170894 + B3 SINE B2 1 205 -11 6 809 323 296 62 31 chr3 29429363 29429492 -130170291 + ID_B1 SINE B4 92 224 0 6 809 255 372 97 89 chr3 29429753 29430248 -130169535 - LTR41 LTR ERVL -80 688 190 6 809 274 324 124 73 chr3 29430279 29430552 -130169231 - LTR41 LTR ERVL -452 316 30 6 809 252 254 0 0 chr3 29431248 29431307 -130168476 + (TTG)n Simple_repeat Simple_repeat 1 59 0 6 809 585 167 102 0 chr3 29431307 29431415 -130168368 - B1_Mur4 SINE Alu -2 148 30 6 809 1591 222 50 14 chr3 29433726 29434083 -130165700 + MTD LTR MaLR 13 382 -37 6 809 23 54 0 0 chr3 29434681 29434718 -130165065 + AT_rich Low_complexity Low_complexity 1 37 0 6 809 255 271 0 17 chr3 29435309 29435369 -130164414 + LTR85b LTR Gypsy? 726 784 0 6 809 369 0 0 0 chr3 29435610 29435651 -130164132 + (CA)n Simple_repeat Simple_repeat 2 42 0 6 809 401 360 23 53 chr3 29435657 29435874 -130163909 + B4A SINE B4 2 214 -78 6 809 221 0 35 0 chr3 29435874 29435903 -130163880 + (CAAA)n Simple_repeat Simple_repeat 3 32 0 6 809 401 360 23 53 chr3 29435903 29435984 -130163799 + B4A SINE B4 215 291 -1 6 809 531 66 0 0 chr3 29435984 29436060 -130163723 + (GA)n Simple_repeat Simple_repeat 2 77 0 6 809 276 148 0 0 chr3 29436969 29437030 -130162753 + (TCTG)n Simple_repeat Simple_repeat 2 62 0 6 809 584 14 14 0 chr3 29437177 29437250 -130162533 + (TG)n Simple_repeat Simple_repeat 2 75 0 6 809 454 248 214 0 chr3 29437262 29437379 -130162404 - B3A SINE B2 -47 151 10 6 809 251 295 62 10 chr3 29437372 29437468 -130162315 + B3 SINE B2 105 205 -11 6 809 524 251 42 72 chr3 29438023 29438216 -130161567 - RLTR23 LTR ERV1 0 430 244 6 809 1966 198 131 14 chr3 29438557 29439070 -130160713 - RMER15 LTR ERVL 0 575 3 6 809 607 12 25 0 chr3 29439335 29439415 -130160368 + (TCTA)n Simple_repeat Simple_repeat 2 83 0 6 809 560 308 13 6 chr3 29439500 29439657 -130160126 + B3A SINE B2 7 164 -34 6 809 195 114 0 0 chr3 29439657 29439692 -130160091 + (CA)n Simple_repeat Simple_repeat 2 36 0 6 809 227 250 21 0 chr3 29439933 29439981 -130159802 - MER82 DNA MER2_type -534 119 71 6 809 216 0 0 0 chr3 29440791 29440815 -130158968 + (T)n Simple_repeat Simple_repeat 1 24 0 6 809 202 29 0 54 chr3 29441102 29441139 -130158644 + (TAA)n Simple_repeat Simple_repeat 2 36 0 6 809 7066 54 14 6 chr3 29441399 29442988 -130156795 - L1Md_F2 LINE L1 -1 6581 4975 6 809 185 180 66 46 chr3 29443879 29443955 -130155828 + MIR SINE MIR 1 73 -195 6 809 450 245 19 65 chr3 29444078 29444274 -130155509 + B4A SINE B4 1 290 -2 6 809 516 315 249 4 chr3 29445741 29445959 -130153824 + B4 SINE B4 3 274 -18 6 809 342 0 0 0 chr3 29445962 29446000 -130153783 + (CA)n Simple_repeat Simple_repeat 2 39 0 6 809 244 288 127 0 chr3 29448753 29448767 -130151016 + B4 SINE B4 70 148 -144 6 809 365 258 62 0 chr3 29448767 29448864 -130150919 + PB1D10 SINE Alu 1 103 -14 6 809 238 0 0 0 chr3 29448940 29448968 -130150815 + L1Md_F2 LINE L1 6097 6124 -458 6 809 2078 48 40 7 chr3 29448968 29449240 -130150543 + L1Md_F2 LINE L1 6290 6570 -12 6 809 4478 258 41 7 chr3 29449648 29450905 -130148878 - Lx5 LINE L1 -38 7422 5727 6 809 18114 55 6 3 chr3 29450892 29454083 -130145700 - L1Md_F2 LINE L1 -1 6581 3381 6 809 7560 83 14 16 chr3 29454080 29456250 -130143533 - L1Md_F2 LINE L1 -3620 2263 98 6 809 800 179 0 7 chr3 29456258 29456404 -130143379 - Lx5 LINE L1 -1297 5753 5609 6 809 11062 181 143 14 chr3 29456402 29459503 -130140280 - Lx5 LINE L1 -1450 4427 929 6 809 233 342 79 40 chr3 29462121 29462273 -130137510 + MIRc SINE MIR 23 180 -88 6 809 235 365 84 55 chr3 29462326 29462671 -130137112 - L2c LINE L2 -58 3329 2975 6 809 636 222 0 0 chr3 29464327 29464507 -130135276 + (TG)n Simple_repeat Simple_repeat 1 180 0 6 809 931 131 26 0 chr3 29464760 29464913 -130134870 - URR1A DNA MER1_type -2 224 68 6 809 1762 206 193 9 chr3 29464913 29465343 -130134440 + RLTR12B LTR ERVK 1 509 -19 6 809 279 179 59 12 chr3 29465447 29465532 -130134251 + (TA)n Simple_repeat Simple_repeat 1 89 0 6 809 207 139 0 0 chr3 29465533 29465569 -130134214 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 6 809 1495 226 174 20 chr3 29465569 29465971 -130133812 - MT2A LTR ERVL -69 464 1 6 809 278 301 81 0 chr3 29466019 29466142 -130133641 - ORSL DNA Tip100 -142 133 1 6 809 3393 28 2 2 chr3 29467182 29467578 -130132205 + MTA_Mm LTR MaLR 1 396 0 6 809 1712 212 30 3 chr3 29467710 29468079 -130131704 + RLTR30 LTR ERV1 1 379 0 6 809 529 279 59 0 chr3 29468149 29468285 -130131498 + B1_Mur1 SINE Alu 5 148 -1 6 809 270 243 100 0 chr3 29468393 29468463 -130131320 - MTC LTR MaLR -327 94 18 6 809 459 0 0 0 chr3 29468965 29469016 -130130767 + (T)n Simple_repeat Simple_repeat 1 51 0 6 809 222 62 0 0 chr3 29469991 29470023 -130129760 + (TTTTG)n Simple_repeat Simple_repeat 3 34 0 6 809 986 92 15 0 chr3 29470029 29470159 -130129624 - B1_Mus1 SINE Alu -12 136 5 6 809 399 306 36 7 chr3 29470526 29470664 -130129119 - B1F1 SINE Alu -1 148 7 6 809 1857 146 3 73 chr3 29470764 29471118 -130128665 + ORR1A4 LTR MaLR 1 329 0 6 809 5143 219 40 13 chr3 29471184 29472319 -130127464 - Lx5 LINE L1 -15 7035 5871 6 809 1791 194 63 8 chr3 29472511 29472875 -130126908 - ORR1C2 LTR MaLR 0 384 1 6 809 2378 255 159 39 chr3 29473254 29474391 -130125392 - RMER1A Other Other -12 1018 2 6 809 252 0 0 0 chr3 29475085 29475113 -130124670 + (TC)n Simple_repeat Simple_repeat 1 28 0 6 809 423 0 0 0 chr3 29475113 29475159 -130124624 + (CA)n Simple_repeat Simple_repeat 1 47 0 6 809 231 202 0 0 chr3 29475166 29475250 -130124533 + A-rich Low_complexity Low_complexity 1 84 0 6 809 265 306 22 45 chr3 29475252 29475341 -130124442 + RSINE1 SINE B4 74 160 -5 6 809 592 243 68 24 chr3 29475730 29475937 -130123846 - B3 SINE B2 0 216 1 6 809 792 74 0 0 chr3 29476789 29476910 -130122873 + (TC)n Simple_repeat Simple_repeat 2 122 0 6 809 360 0 0 0 chr3 29476910 29476949 -130122834 + (TG)n Simple_repeat Simple_repeat 1 40 0 6 809 275 345 42 17 chr3 29477096 29477214 -130122569 + MER5A1 DNA MER1_type 16 136 -30 6 809 428 335 23 29 chr3 29477237 29477409 -130122374 + MER5B DNA MER1_type 8 178 0 6 809 390 176 0 0 chr3 29478144 29478229 -130121554 + (TG)n Simple_repeat Simple_repeat 2 86 0 6 809 22 0 0 0 chr3 29478342 29478364 -130121419 + AT_rich Low_complexity Low_complexity 1 22 0 6 809 507 279 95 15 chr3 29478532 29478732 -130121051 + B3 SINE B2 1 216 0 6 809 7330 62 3 0 chr3 29478735 29479769 -130120014 + L1_Mus1 LINE L1 5588 6567 0 6 809 36 62 0 0 chr3 29479776 29479840 -130119943 + AT_rich Low_complexity Low_complexity 1 64 0 6 809 211 309 126 51 chr3 29480071 29480286 -130119497 + L3 LINE CR1 3618 3848 -641 6 809 900 91 0 0 chr3 29480731 29480863 -130118920 + (TCCC)n Simple_repeat Simple_repeat 1 132 0 6 809 216 0 0 0 chr3 29481611 29481635 -130118148 + (A)n Simple_repeat Simple_repeat 1 24 0 6 809 22 0 0 0 chr3 29482380 29482402 -130117381 + AT_rich Low_complexity Low_complexity 1 22 0 6 809 498 17 0 0 chr3 29483109 29483168 -130116615 + (TC)n Simple_repeat Simple_repeat 1 59 0 6 809 270 333 0 85 chr3 29484108 29484226 -130115557 - PB1D10 SINE Alu -9 108 1 6 809 840 284 63 22 chr3 29484938 29485208 -130114575 + B4 SINE B4 8 288 -4 6 809 552 42 0 0 chr3 29485243 29485314 -130114469 + (CA)n Simple_repeat Simple_repeat 2 72 0 6 809 213 180 0 0 chr3 29485758 29485808 -130113975 + CT-rich Low_complexity Low_complexity 1 50 0 6 809 23 0 0 0 chr3 29486735 29486758 -130113025 + AT_rich Low_complexity Low_complexity 1 23 0 6 809 1175 62 0 14 chr3 29487918 29488066 -130111717 + B1_Mus2 SINE Alu 1 146 -1 6 809 332 357 0 0 chr3 29488095 29488221 -130111562 + (CA)n Simple_repeat Simple_repeat 2 127 0 6 809 825 74 0 0 chr3 29488901 29489023 -130110760 + (TC)n Simple_repeat Simple_repeat 2 123 0 6 809 302 349 19 13 chr3 29489120 29489274 -130110509 + MLT1A0 LTR MaLR 2 156 -209 6 809 946 232 131 10 chr3 29489702 29489866 -130109917 - Lx7 LINE L1 -6 7690 7505 6 809 645 25 0 0 chr3 29489866 29489945 -130109838 + (AGATG)n Simple_repeat Simple_repeat 5 83 0 6 101 5333 214 45 7 chr3 29489945 29491699 -130108084 - Lx7 LINE L1 -192 7504 5393 6 810 455 268 0 30 chr3 29492437 29492568 -130107215 - Lx7 LINE L1 -16 7680 7554 6 810 828 115 131 0 chr3 29492580 29492710 -130107073 + B1_Mus2 SINE Alu 1 147 0 6 810 275 49 24 0 chr3 29492713 29492754 -130107029 + (TAAA)n Simple_repeat Simple_repeat 1 42 0 6 810 1149 234 69 31 chr3 29492769 29493118 -130106665 - Lx7 LINE L1 -217 7479 7118 6 810 434 49 16 0 chr3 29493241 29493302 -130106481 + (TG)n Simple_repeat Simple_repeat 1 62 0 6 810 442 367 29 4 chr3 29493312 29493588 -130106195 - B4A SINE B4 -6 286 4 6 810 318 296 154 34 chr3 29493968 29494143 -130105640 - MER74C LTR ERVL -4 456 261 7 810 675 227 61 61 chr3 29494419 29494616 -130105167 + B3A SINE B2 1 197 -1 7 810 628 324 68 15 chr3 29496621 29496887 -130102896 + B4A SINE B4 1 280 -12 7 810 183 156 0 0 chr3 29496959 29496991 -130102792 + (CATG)n Simple_repeat Simple_repeat 1 32 0 7 810 186 43 0 0 chr3 29497159 29497182 -130102601 + (TG)n Simple_repeat Simple_repeat 2 24 0 7 810 1311 192 62 17 chr3 29497182 29497631 -130102152 - Lx9 LINE L1 -168 7476 6921 7 810 1682 222 27 5 chr3 29497695 29497754 -130102029 - ORR1C2 LTR MaLR 0 384 322 7 810 264 59 0 0 chr3 29497754 29497788 -130101995 + (TAAAA)n Simple_repeat Simple_repeat 2 35 0 7 810 1682 222 27 5 chr3 29497788 29497880 -130101903 - ORR1C2 LTR MaLR -63 321 227 7 810 279 0 0 0 chr3 29497880 29497911 -130101872 + (CTG)n Simple_repeat Simple_repeat 3 33 0 7 810 1682 222 27 5 chr3 29497911 29498134 -130101649 - ORR1C2 LTR MaLR -158 226 2 7 810 769 173 92 6 chr3 29498230 29498404 -130101379 + Lx LINE L1 6462 6650 -4 7 810 191 36 0 35 chr3 29498464 29498493 -130101290 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 7 810 539 203 136 0 chr3 29498493 29498611 -130101172 - B1_Mus2 SINE Alu -13 134 1 7 810 4269 70 45 17 chr3 29498726 29499320 -130100463 - L1Md_F2 LINE L1 -12 6570 5960 7 810 2202 234 46 28 chr3 29499393 29499996 -130099787 + Lx9 LINE L1 6317 6930 -714 7 810 24 0 0 0 chr3 29500277 29500301 -130099482 + AT_rich Low_complexity Low_complexity 1 24 0 1 810 22 35 0 0 chr3 29500618 29500647 -130099136 + AT_rich Low_complexity Low_complexity 1 29 0 2 810 2093 92 98 3 chr3 29501684 29502011 -130097772 + Lx LINE L1 6297 6654 0 3 810 331 321 58 36 chr3 29502297 29502436 -130097347 - MIRb SINE MIR -73 195 54 4 810 786 50 0 0 chr3 29502892 29502991 -130096792 + (TCTA)n Simple_repeat Simple_repeat 2 100 0 5 810 186 43 0 0 chr3 29503573 29503596 -130096187 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 6 810 501 275 337 11 chr3 29503641 29503911 -130095872 - Lx9 LINE L1 -1673 5971 5614 7 810 31 26 0 0 chr3 29503967 29504005 -130095778 + AT_rich Low_complexity Low_complexity 1 38 0 8 810 1140 82 0 0 chr3 29504081 29504227 -130095556 + B1_Mus2 SINE Alu 1 146 -1 9 810 4413 30 0 6 chr3 29504705 29505237 -130094546 - L1Md_F3 LINE L1 -1 6583 6055 1 810 3895 16 0 0 chr3 29505240 29505687 -130094096 + L1Md_F3 LINE L1 5597 6043 -541 1 810 650 145 301 6 chr3 29505803 29505976 -130093807 + URR1B DNA MER1_type 2 225 0 1 810 396 360 111 17 chr3 29506024 29506383 -130093400 - LTR16A LTR ERVL -1 450 58 1 810 193 226 8 34 chr3 29506819 29506938 -130092845 + (TG)n Simple_repeat Simple_repeat 1 116 0 1 810 393 213 12 24 chr3 29506970 29507138 -130092645 + (TA)n Simple_repeat Simple_repeat 2 167 0 1 810 215 190 17 0 chr3 29508582 29508640 -130091143 + (CA)n Simple_repeat Simple_repeat 2 60 0 1 810 342 278 192 59 chr3 29508964 29509151 -130090632 - ID_B1 SINE B4 -8 216 5 1 810 30934 101 10 4 chr3 29509826 29512877 -130086906 - L1_Mus2 LINE L1 0 6566 3495 1 810 282 29 0 0 chr3 29512877 29512912 -130086871 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1 810 30934 115 11 23 chr3 29512912 29515766 -130084017 - L1_Mus2 LINE L1 -2389 3494 670 1 810 312 91 0 0 chr3 29516448 29516492 -130083291 + (CA)n Simple_repeat Simple_repeat 1 44 0 1 810 186 118 0 0 chr3 29516740 29516774 -130083009 + (CCA)n Simple_repeat Simple_repeat 2 35 0 2 810 363 23 0 0 chr3 29516774 29516818 -130082965 + (CAA)n Simple_repeat Simple_repeat 3 46 0 2 810 271 309 15 68 chr3 29516912 29517176 -130082607 + RMER17C LTR ERVK 1 250 -160 2 810 232 200 14 14 chr3 29517774 29517845 -130081938 + (TA)n Simple_repeat Simple_repeat 2 72 0 2 810 296 175 16 0 chr3 29518996 29519059 -130080724 + (TA)n Simple_repeat Simple_repeat 2 65 0 2 810 301 255 11 0 chr3 29519458 29519552 -130080231 + (TA)n Simple_repeat Simple_repeat 2 96 0 2 810 994 31 15 0 chr3 29519552 29519682 -130080101 + (TAGA)n Simple_repeat Simple_repeat 4 135 0 2 810 367 189 115 0 chr3 29519744 29519866 -130079917 + Lx9 LINE L1 7503 7638 -6 2 810 24 53 0 0 chr3 29519922 29519960 -130079823 + AT_rich Low_complexity Low_complexity 1 38 0 2 810 315 0 0 0 chr3 29520820 29520855 -130078928 + (TG)n Simple_repeat Simple_repeat 1 35 0 2 810 310 282 99 9 chr3 29520896 29521007 -130078776 - MLT1A0 LTR MaLR 0 365 245 3 810 234 0 0 0 chr3 29521205 29521231 -130078552 + (A)n Simple_repeat Simple_repeat 1 26 0 3 810 726 225 14 0 chr3 29521432 29521570 -130078213 + B1_Mur4 SINE Alu 5 144 -6 3 810 330 263 31 19 chr3 29522168 29522327 -130077456 - L1ME4a LINE L1 -5 6119 5959 3 810 444 19 0 0 chr3 29522490 29522543 -130077240 + (TA)n Simple_repeat Simple_repeat 1 53 0 3 810 227 150 24 48 chr3 29522549 29522633 -130077150 - MT2A LTR ERVL -4 529 448 3 810 431 336 32 84 chr3 29522750 29523000 -130076783 - MT2A LTR ERVL -142 391 155 3 810 280 316 171 0 chr3 29523033 29523150 -130076633 - MTE2a LTR MaLR -242 137 1 3 810 2835 268 46 55 chr3 29523651 29524583 -130075200 - RMER1C Other Other -1 1341 418 3 810 261 361 0 0 chr3 29524770 29524878 -130074905 - RMER1B Other Other -913 153 46 3 810 768 50 0 0 chr3 29525415 29525516 -130074267 + (CA)n Simple_repeat Simple_repeat 2 102 0 3 810 1779 304 69 20 chr3 29525648 29526401 -130073382 - Lx9 LINE L1 -355 7289 6500 4 810 320 357 94 12 chr3 29526782 29526952 -130072831 + MIRc SINE MIR 35 218 -50 4 810 245 350 89 51 chr3 29527695 29527909 -130071874 + MIRb SINE MIR 24 245 -23 4 810 5838 209 30 20 chr3 29528097 29529323 -130070460 - Lx5 LINE L1 -1 7049 5809 4 810 1216 216 125 38 chr3 29529330 29529643 -130070140 + MTD LTR MaLR 80 419 0 4 810 188 375 16 24 chr3 29531394 29531517 -130068266 - L2c LINE L2 -179 3208 3087 4 810 613 326 28 5 chr3 29531963 29532179 -130067604 + Lx8 LINE L1 6922 7142 -331 4 810 248 253 64 0 chr3 29532248 29532354 -130067429 - L1M3e LINE L1 -1767 5336 5215 4 810 689 292 73 40 chr3 29532725 29533283 -130066500 - L1M3e LINE L1 -4746 2291 1698 4 810 8193 114 26 11 chr3 29533749 29535388 -130064395 - Lx3A LINE L1 -4 6977 5313 4 810 769 313 54 0 chr3 29535494 29535753 -130064030 - L1M3e LINE L1 -6752 278 6 4 810 25 0 0 0 chr3 29535823 29535848 -130063935 + AT_rich Low_complexity Low_complexity 1 25 0 4 810 209 152 43 0 chr3 29535983 29536029 -130063754 + T-rich Low_complexity Low_complexity 5 52 0 5 810 566 184 8 0 chr3 29536611 29536736 -130063047 + GA-rich Low_complexity Low_complexity 2 127 0 5 810 362 247 74 0 chr3 29537528 29537609 -130062174 + B3 SINE B2 58 144 -72 5 810 429 272 56 86 chr3 29537590 29537634 -130062149 - ORR1D1-int LTR MaLR -4 1959 1924 5 810 1024 145 350 14 chr3 29537634 29537914 -130061869 - ORR1D1 LTR MaLR 0 374 1 5 810 1481 174 42 7 chr3 29537914 29538199 -130061584 - ORR1D1-int LTR MaLR -1 1369 1076 5 810 1432 215 89 41 chr3 29538202 29538240 -130061543 - MT2B LTR ERVL -2 599 562 5 810 396 0 0 0 chr3 29538240 29538284 -130061499 + (TCTA)n Simple_repeat Simple_repeat 2 45 0 5 810 1432 214 191 178 chr3 29538284 29538712 -130061071 - MT2B LTR ERVL -40 561 1 5 810 2998 235 68 37 chr3 29538712 29539464 -130060319 - ORR1D1-int LTR MaLR -290 1080 306 5 810 38 39 0 0 chr3 29539475 29539527 -130060256 + AT_rich Low_complexity Low_complexity 1 52 0 5 810 225 0 0 0 chr3 29539621 29539646 -130060137 + (CAAA)n Simple_repeat Simple_repeat 4 28 0 5 810 22 35 0 0 chr3 29539856 29539885 -130059898 + AT_rich Low_complexity Low_complexity 1 29 0 5 810 4599 227 49 34 chr3 29539890 29540137 -130059646 - Lx6 LINE L1 -186 7274 7026 6 810 180 0 0 0 chr3 29540137 29540157 -130059626 + (TTTTG)n Simple_repeat Simple_repeat 3 22 0 6 810 4599 227 49 34 chr3 29540157 29540966 -130058817 - Lx6 LINE L1 -435 7025 6203 6 810 309 26 0 0 chr3 29540971 29541009 -130058774 + (CA)n Simple_repeat Simple_repeat 2 39 0 6 810 2317 177 133 2 chr3 29541012 29541714 -130058069 + Lx7 LINE L1 5353 6156 -1540 6 810 992 176 16 11 chr3 29541715 29541899 -130057884 - ORR1D1-int LTR MaLR -1044 326 142 5 810 578 207 8 0 chr3 29542033 29542154 -130057629 - ORR1D1-int LTR MaLR -1248 122 1 5 810 712 249 179 9 chr3 29542154 29542456 -130057327 - ORR1D1 LTR MaLR 0 370 9 5 810 286 257 0 0 chr3 29543268 29543342 -130056441 - MLT2B5 LTR ERVL -6 549 476 6 810 492 137 0 0 chr3 29543400 29543502 -130056281 + (TA)n Simple_repeat Simple_repeat 1 102 0 6 810 405 86 0 0 chr3 29543839 29543897 -130055886 + (TA)n Simple_repeat Simple_repeat 2 59 0 6 810 1502 234 22 42 chr3 29543897 29544304 -130055479 - MT2A LTR ERVL -58 543 5 6 810 366 279 37 26 chr3 29544311 29544496 -130055287 - L1MB8 LINE L1 -194 5984 5798 6 810 476 301 35 0 chr3 29544659 29544802 -130054981 - RSINE1 SINE B4 -1 164 17 6 810 615 293 108 18 chr3 29545796 29546230 -130053553 + L1MC LINE L1 3376 3848 -2298 7 810 269 254 80 133 chr3 29546230 29546242 -130053541 + ID_B1 SINE B4 82 160 -64 7 810 288 296 53 46 chr3 29546242 29546373 -130053410 + B1F SINE Alu 10 141 -8 7 810 243 265 45 66 chr3 29546768 29546966 -130052817 - RMER17C LTR ERVK -136 274 81 7 810 186 133 0 0 chr3 29547494 29547524 -130052259 + (T)n Simple_repeat Simple_repeat 1 30 0 7 810 399 314 0 8 chr3 29548020 29548142 -130051641 + RSINE1 SINE B4 2 122 -43 7 810 937 246 24 0 chr3 29548243 29548454 -130051329 - B3 SINE B2 0 216 1 7 810 551 257 69 0 chr3 29548500 29548644 -130051139 - Lx6 LINE L1 -40 7420 7267 7 810 450 203 54 48 chr3 29549151 29549337 -130050446 + Lx9 LINE L1 7458 7644 0 7 810 251 316 114 29 chr3 29549966 29550106 -130049677 - MIR3 SINE MIR -52 156 5 7 810 635 0 13 0 chr3 29551078 29551153 -130048630 + (TC)n Simple_repeat Simple_repeat 1 76 0 8 810 1181 49 0 0 chr3 29551158 29551301 -130048482 - B1_Mus1 SINE Alu -5 143 1 8 810 614 253 96 30 chr3 29551399 29551663 -130048120 + MTC LTR MaLR 2 298 -109 8 810 629 58 12 0 chr3 29551673 29551759 -130048024 + (TA)n Simple_repeat Simple_repeat 2 88 0 8 810 23 0 0 0 chr3 29553171 29553194 -130046589 + AT_rich Low_complexity Low_complexity 1 23 0 8 810 458 257 65 33 chr3 29553194 29553229 -130046554 - RSINE1 SINE B4 -6 159 120 8 810 450 0 0 0 chr3 29553229 29553279 -130046504 + (TC)n Simple_repeat Simple_repeat 2 51 0 8 810 441 0 0 0 chr3 29553279 29553327 -130046456 + (TG)n Simple_repeat Simple_repeat 2 50 0 8 810 458 257 65 33 chr3 29553327 29553443 -130046340 - RSINE1 SINE B4 -46 119 3 8 810 216 0 0 0 chr3 29553549 29553573 -130046210 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 8 810 368 303 0 10 chr3 29553610 29553710 -130046073 - B1F2 SINE Alu -50 99 1 8 810 433 265 29 0 chr3 29554149 29554251 -130045532 - B3 SINE B2 -2 214 110 9 810 348 24 0 0 chr3 29555244 29555285 -130044498 + (TCC)n Simple_repeat Simple_repeat 1 41 0 9 810 333 0 0 0 chr3 29555647 29555684 -130044099 + (CA)n Simple_repeat Simple_repeat 2 38 0 9 810 384 40 0 0 chr3 29555685 29555735 -130044048 + (GA)n Simple_repeat Simple_repeat 2 51 0 9 810 597 257 32 86 chr3 29556668 29556855 -130042928 - B3A SINE B2 -27 189 13 9 810 230 136 23 0 chr3 29557480 29557524 -130042259 + CT-rich Low_complexity Low_complexity 4 48 0 9 810 610 248 8 8 chr3 29557620 29557750 -130042033 - B1_Mus1 SINE Alu -12 136 7 9 810 351 0 0 0 chr3 29557757 29557796 -130041987 + (TC)n Simple_repeat Simple_repeat 2 40 0 9 810 414 57 0 0 chr3 29557797 29557850 -130041933 + (TATG)n Simple_repeat Simple_repeat 2 54 0 9 810 503 325 94 0 chr3 29558644 29558804 -130040979 + B4A SINE B4 1 175 -117 9 810 350 285 22 34 chr3 29558900 29559078 -130040705 + (CATA)n Simple_repeat Simple_repeat 4 179 0 1 810 346 266 28 40 chr3 29559017 29559193 -130040590 + (CATATA)n Simple_repeat Simple_repeat 6 179 0 1 810 1925 122 82 3 chr3 29559195 29559498 -130040285 + ORR1A2 LTR MaLR 1 327 0 1 810 215 283 50 10 chr3 29559572 29559672 -130040111 + (CA)n Simple_repeat Simple_repeat 1 104 0 1 810 338 61 0 20 chr3 29559862 29559912 -130039871 + (TATG)n Simple_repeat Simple_repeat 4 52 0 1 810 406 319 87 22 chr3 29562069 29562207 -130037576 + B4A SINE B4 144 290 -2 9 810 249 258 0 16 chr3 29562214 29562277 -130037506 + (CA)n Simple_repeat Simple_repeat 2 63 0 1 810 288 120 0 0 chr3 29562292 29562342 -130037441 + (CAGA)n Simple_repeat Simple_repeat 2 51 0 1 810 852 294 51 32 chr3 29562400 29563006 -130036777 - L1M2 LINE L1 -3277 2869 2257 1 810 2789 157 35 38 chr3 29563024 29563599 -130036184 - RMER15 LTR ERVL -2 573 1 1 810 342 61 0 0 chr3 29563950 29563999 -130035784 + (CAGA)n Simple_repeat Simple_repeat 4 52 0 1 810 220 62 60 40 chr3 29564018 29564068 -130035715 + (CAGAGA)n Simple_repeat Simple_repeat 2 52 0 1 810 551 314 18 6 chr3 29564093 29564263 -130035520 - B4A SINE B4 -13 279 108 1 810 670 317 97 31 chr3 29564274 29565220 -130034563 + L1MA4 LINE L1 4843 5897 -403 1 810 431 87 0 14 chr3 29566700 29566770 -130033013 + (TC)n Simple_repeat Simple_repeat 1 69 0 1 810 344 313 50 57 chr3 29566782 29566941 -130032842 - HAL1-3A_ME LINE L1 -414 2444 2287 1 810 1563 129 4 0 chr3 29567429 29567662 -130032121 - ORR1A3 LTR MaLR 0 326 93 1 810 455 18 0 0 chr3 29567726 29567781 -130032002 - B1_Mm SINE Alu -34 113 59 1 810 307 161 125 0 chr3 29567767 29567823 -130031960 - B3 SINE B2 -152 64 2 1 810 709 117 2 0 chr3 29567823 29567929 -130031854 - ORR1A3 LTR MaLR -221 108 1 1 810 345 290 87 80 chr3 29568107 29568257 -130031526 + RSINE1 SINE B4 13 163 -2 1 810 203 125 0 24 chr3 29568263 29568304 -130031479 + (TAAA)n Simple_repeat Simple_repeat 1 40 0 1 810 396 0 0 0 chr3 29569345 29569389 -130030394 + (TG)n Simple_repeat Simple_repeat 1 44 0 1 810 29908 90 14 8 chr3 29570572 29575886 -130023897 + L1Md_F2 LINE L1 238 5585 -298 1 810 7338 76 6 5 chr3 29575887 29576877 -130022906 + L1Md_F2 LINE L1 5587 6577 -5 1 810 7649 17 1 1 chr3 29577588 29578515 -130021268 + L1Md_T LINE L1 4660 5586 -297 1 810 8462 33 1 0 chr3 29578515 29579510 -130020273 + L1Md_T LINE L1 5587 6582 0 1 810 219 299 185 9 chr3 29580488 29580596 -130019187 + B1F SINE Alu 23 149 0 1 810 1915 174 43 6 chr3 29580692 29581044 -130018739 + ORR1B2 LTR MaLR 1 365 -2 1 810 1369 231 52 11 chr3 29581983 29582351 -130017432 + ORR1C2 LTR MaLR 2 384 0 1 810 248 258 140 0 chr3 29583452 29583545 -130016238 + RMER20B LTR ERVK 287 392 -235 1 810 401 235 0 12 chr3 29583851 29583933 -130015850 - B4 SINE B4 -6 286 206 1 810 502 191 138 14 chr3 29583949 29584087 -130015696 - RLTR11B LTR ERVK -15 438 284 1 810 1025 227 19 54 chr3 29584144 29584461 -130015322 - RLTR11B LTR ERVK -220 307 1 1 810 256 289 3 0 chr3 29584573 29584632 -130015151 - B4A SINE B4 -219 73 14 1 810 240 156 27 27 chr3 29584662 29584774 -130015009 + (TA)n Simple_repeat Simple_repeat 2 113 0 1 810 525 298 109 31 chr3 29584782 29585204 -130014579 + Lx8 LINE L1 7010 7464 -9 1 810 335 275 239 31 chr3 29585219 29585310 -130014473 - Lx8 LINE L1 -2 7471 7368 1 810 378 0 0 0 chr3 29585310 29585352 -130014431 + (TCCC)n Simple_repeat Simple_repeat 1 42 0 1 810 335 275 239 31 chr3 29585352 29585515 -130014268 - Lx8 LINE L1 -106 7367 7164 1 810 262 244 92 11 chr3 29586324 29586411 -130013372 - MLT1A0 LTR MaLR 0 365 272 1 810 329 319 88 63 chr3 29587432 29587776 -130012007 - MLT1C LTR MaLR -26 441 24 1 810 422 36 0 18 chr3 29591817 29591874 -130007909 + (CA)n Simple_repeat Simple_repeat 1 56 0 1 810 225 0 0 0 chr3 29591874 29591898 -130007885 + (TA)n Simple_repeat Simple_repeat 1 25 0 1 810 929 94 0 12 chr3 29591898 29592058 -130007725 + (CAGAGA)n Simple_repeat Simple_repeat 4 162 0 1 810 415 343 167 35 chr3 29592357 29592819 -130006964 - MLT1H LTR MaLR -9 540 16 1 810 1436 76 10 0 chr3 29592856 29593053 -130006730 + L1Md_A LINE L1 6382 6580 -2 1 810 216 67 0 0 chr3 29593110 29593140 -130006643 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 1 810 219 36 0 0 chr3 29594641 29594669 -130005114 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 1 810 618 14 0 0 chr3 29595439 29595510 -130004273 + (TC)n Simple_repeat Simple_repeat 2 72 0 1 810 1175 48 0 7 chr3 29595522 29595669 -130004114 - B1_Mus2 SINE Alu -1 146 1 1 810 684 288 184 28 chr3 29596666 29597154 -130002629 - MTEa-int LTR MaLR -90 1490 972 1 810 396 0 0 0 chr3 29597295 29597339 -130002444 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 810 363 283 20 0 chr3 29597370 29597469 -130002314 - RSINE1 SINE B4 -63 102 2 1 810 180 213 41 41 chr3 29597608 29597657 -130002126 + L2c LINE L2 3319 3367 -20 1 810 466 182 21 29 chr3 29598108 29598214 -130001569 + RMER10A LTR ERVL 50 156 -286 1 810 923 223 88 25 chr3 29598417 29598723 -130001060 - Lx2B LINE L1 -12 6985 6648 1 810 3734 108 58 9 chr3 29598722 29599053 -130000730 + L1_Mur2 LINE L1 4294 4637 -1240 1 810 324 0 0 0 chr3 29599053 29599089 -130000694 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 1 810 3734 108 58 9 chr3 29599089 29599394 -130000389 + L1_Mur2 LINE L1 4638 4961 -916 1 810 1501 224 69 12 chr3 29599394 29599728 -130000055 - MTD LTR MaLR -66 353 1 1 810 322 154 70 93 chr3 29599886 29599972 -129999811 + RLTR25B LTR ERVK 426 509 -519 1 810 904 43 0 0 chr3 29599900 29600015 -129999768 + B1_Mus2 SINE Alu 33 147 0 1 810 213 94 0 0 chr3 29600015 29600047 -129999736 + (A)n Simple_repeat Simple_repeat 1 32 0 1 810 187 238 27 149 chr3 29601180 29601254 -129998529 - L2c LINE L2 -233 3154 3090 1 810 234 0 0 0 chr3 29601439 29601465 -129998318 + (TG)n Simple_repeat Simple_repeat 2 27 0 1 810 866 313 25 47 chr3 29601521 29601796 -129997987 - B4A SINE B4 -21 271 3 1 810 579 53 0 0 chr3 29602118 29602193 -129997590 + (TC)n Simple_repeat Simple_repeat 1 75 0 1 810 263 314 83 25 chr3 29602465 29602660 -129997123 + MIR SINE MIR 1 205 -63 1 810 2752 231 28 109 chr3 29602662 29603797 -129995986 - L1_Mur3 LINE L1 -262 5618 4576 1 810 3559 275 82 29 chr3 29603819 29604216 -129995567 + Lx7 LINE L1 5747 6174 -1522 1 810 387 0 0 0 chr3 29604216 29604259 -129995524 + (CATA)n Simple_repeat Simple_repeat 2 44 0 1 810 3559 275 82 29 chr3 29604259 29605331 -129994452 + Lx7 LINE L1 6175 7292 -404 1 810 582 86 0 0 chr3 29605374 29605455 -129994328 + (TTTTG)n Simple_repeat Simple_repeat 5 85 0 1 810 228 35 0 0 chr3 29605457 29605486 -129994297 + (TCTCTG)n Simple_repeat Simple_repeat 2 30 0 1 810 378 57 0 0 chr3 29605491 29605544 -129994239 + (TG)n Simple_repeat Simple_repeat 2 54 0 1 810 277 216 11 33 chr3 29605595 29605686 -129994097 + Lx7 LINE L1 7596 7684 -12 1 810 207 173 0 0 chr3 29606364 29606416 -129993367 + (TAAA)n Simple_repeat Simple_repeat 3 54 0 1 810 1111 159 52 26 chr3 29606858 29607091 -129992692 + Lx3A LINE L1 6734 6972 -9 1 810 29 0 0 0 chr3 29607101 29607130 -129992653 + AT_rich Low_complexity Low_complexity 1 29 0 1 810 581 236 153 0 chr3 29607132 29607289 -129992494 + B3A SINE B2 2 182 -16 1 810 767 304 145 4 chr3 29609147 29609395 -129990388 + B4A SINE B4 6 288 -4 1 810 276 53 0 0 chr3 29609568 29609606 -129990177 + (TGG)n Simple_repeat Simple_repeat 3 40 0 1 810 468 0 0 0 chr3 29609951 29610003 -129989780 + (TG)n Simple_repeat Simple_repeat 2 53 0 1 810 473 332 45 10 chr3 29611018 29611216 -129988567 - MLT1H LTR MaLR -339 210 6 1 810 209 340 32 11 chr3 29612876 29612971 -129986812 + MER5A DNA MER1_type 93 189 0 1 810 328 362 43 0 chr3 29613219 29613357 -129986426 - L1ME3A LINE L1 -9 6164 6021 1 810 344 336 110 25 chr3 29613749 29614030 -129985753 - L1ME3A LINE L1 -439 5734 5430 1 810 4877 82 8 16 chr3 29614030 29614791 -129984992 - MusHAL1 LINE L1 -408 2304 1550 1 810 372 361 76 27 chr3 29614791 29614989 -129984794 - L1ME3A LINE L1 -872 5274 5058 1 810 1105 124 45 11 chr3 29614989 29615168 -129984615 + B2_Mm2 SINE B2 5 189 -6 1 810 372 361 76 27 chr3 29615168 29615231 -129984552 - L1ME3A LINE L1 -1089 5057 5000 1 810 401 285 22 6 chr3 29615234 29615414 -129984369 + L1M5 LINE L1 3760 3942 -2204 1 810 831 330 17 33 chr3 29615907 29616148 -129983635 + B4A SINE B4 1 237 -55 1 810 396 310 178 29 chr3 29616205 29616717 -129983066 + L1M5 LINE L1 4393 4980 -1166 1 810 894 236 28 19 chr3 29617575 29617787 -129981996 + B3 SINE B2 2 215 -1 1 101 36326 12 2 7 chr3 29618400 29623785 -129975998 + L1Md_A LINE L1 232 5586 -297 1 811 8855 13 0 0 chr3 29623785 29624781 -129975002 + L1Md_A LINE L1 5587 6582 0 1 811 1199 271 14 7 chr3 29626174 29626449 -129973334 + B4 SINE B4 1 277 -15 1 811 690 13 0 0 chr3 29626480 29626559 -129973224 + (TC)n Simple_repeat Simple_repeat 1 79 0 1 811 237 33 0 0 chr3 29626559 29626588 -129973195 + (CA)n Simple_repeat Simple_repeat 1 30 0 1 811 487 314 48 26 chr3 29627578 29627807 -129971976 - MTEa LTR MaLR -43 336 103 1 811 275 194 27 14 chr3 29627872 29627945 -129971838 - MTEa LTR MaLR -300 79 6 1 811 786 272 27 0 chr3 29628720 29628944 -129970839 + Lx7 LINE L1 5596 5825 -1871 1 811 885 89 0 0 chr3 29628946 29629070 -129970713 + (TATTG)n Simple_repeat Simple_repeat 3 126 0 1 811 755 178 6 0 chr3 29629664 29629833 -129969950 + GA-rich Low_complexity Low_complexity 2 171 0 1 811 321 286 110 55 chr3 29630035 29630235 -129969548 - Tigger7 DNA MER2_type 0 2491 2281 1 811 281 312 50 30 chr3 29630977 29631076 -129968707 - Charlie4z DNA MER1_type -64 103 3 1 811 350 346 95 36 chr3 29632086 29632392 -129967391 - L1ME3B LINE L1 -359 5881 5558 1 811 21 0 0 0 chr3 29633801 29633822 -129965961 + AT_rich Low_complexity Low_complexity 1 21 0 1 811 248 290 40 61 chr3 29633882 29633981 -129965802 - B4A SINE B4 0 292 196 1 811 201 74 0 0 chr3 29634290 29634317 -129965466 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 811 1989 24 0 0 chr3 29635347 29635598 -129964185 - L1_Mm LINE L1 -2543 3340 3090 1 811 3268 18 0 0 chr3 29635584 29635977 -129963806 + L1Md_T LINE L1 5194 5586 -297 1 811 9021 6 0 0 chr3 29635977 29636979 -129962804 + L1Md_T LINE L1 5587 6582 0 1 811 5165 14 0 0 chr3 29636979 29637575 -129962208 + L1Md_T LINE L1 6004 6582 0 1 811 4831 42 2 0 chr3 29637575 29638210 -129961573 + L1Md_T LINE L1 6004 6582 0 1 811 186 43 0 0 chr3 29639796 29639819 -129959964 + (T)n Simple_repeat Simple_repeat 1 23 0 1 811 21 0 0 0 chr3 29640641 29640662 -129959121 + AT_rich Low_complexity Low_complexity 1 21 0 2 811 938 303 43 14 chr3 29640840 29641118 -129958665 + B4A SINE B4 1 286 -6 2 811 309 51 0 0 chr3 29644157 29644196 -129955587 + (TG)n Simple_repeat Simple_repeat 2 40 0 2 811 764 354 37 30 chr3 29644214 29644485 -129955298 - B4A SINE B4 -14 278 6 2 811 399 41 0 0 chr3 29645564 29645613 -129954170 + (CA)n Simple_repeat Simple_repeat 1 49 0 2 811 233 352 0 21 chr3 29646377 29646470 -129953313 + MIR SINE MIR 141 231 -31 2 811 247 350 62 17 chr3 29646586 29646681 -129953102 - B2_Mm2 SINE B2 -10 185 1 2 811 302 284 24 12 chr3 29646681 29646763 -129953020 - B4A SINE B4 -209 83 1 2 811 189 74 0 0 chr3 29646812 29646839 -129952944 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2 811 600 287 90 14 chr3 29647615 29647894 -129951889 + Lx8 LINE L1 7170 7469 -4 2 811 1820 269 179 18 chr3 29649026 29649927 -129949856 - Lx8 LINE L1 -340 7133 6088 2 811 393 22 0 0 chr3 29649959 29650005 -129949778 + (TC)n Simple_repeat Simple_repeat 2 47 0 2 811 258 32 0 0 chr3 29650005 29650035 -129949748 + (TG)n Simple_repeat Simple_repeat 2 32 0 2 811 945 113 0 0 chr3 29650035 29650211 -129949572 + (TC)n Simple_repeat Simple_repeat 2 178 0 2 811 377 193 12 35 chr3 29650978 29651064 -129948719 - HAL1-3A_ME LINE L1 -799 2059 1976 2 811 413 254 0 8 chr3 29651067 29651335 -129948448 + (TG)n Simple_repeat Simple_repeat 1 265 0 2 811 22 70 0 0 chr3 29652631 29652674 -129947109 + AT_rich Low_complexity Low_complexity 1 43 0 2 811 420 324 35 21 chr3 29652844 29652989 -129946794 + MLT1D LTR MaLR 13 159 -346 2 811 468 0 0 0 chr3 29653008 29653060 -129946723 + (CA)n Simple_repeat Simple_repeat 2 53 0 2 811 261 219 60 24 chr3 29653153 29653237 -129946546 - Lx8 LINE L1 -94 7379 7293 2 811 1456 264 82 62 chr3 29653442 29654052 -129945731 - Lx8 LINE L1 -313 7160 6539 2 811 228 35 0 0 chr3 29658930 29658959 -129940824 + (T)n Simple_repeat Simple_repeat 1 29 0 2 811 351 0 0 0 chr3 29659230 29659269 -129940514 + (CA)n Simple_repeat Simple_repeat 1 39 0 2 811 363 254 0 0 chr3 29660056 29660178 -129939605 + (CA)n Simple_repeat Simple_repeat 2 123 0 2 811 296 306 0 0 chr3 29661346 29661431 -129938352 + (CATA)n Simple_repeat Simple_repeat 4 88 0 2 811 210 351 10 69 chr3 29661747 29661848 -129937935 + B1_Mur4 SINE Alu 30 124 -26 2 811 1855 181 13 74 chr3 29662260 29662637 -129937146 + ORR1B1 LTR MaLR 41 394 0 2 811 21 36 0 0 chr3 29662708 29662736 -129937047 + AT_rich Low_complexity Low_complexity 1 28 0 2 811 298 301 73 62 chr3 29663587 29663764 -129936019 + MIRc SINE MIR 58 236 -32 2 811 364 350 66 66 chr3 29663766 29664008 -129935775 + MER102b DNA MER1_type 2 243 -98 2 811 1118 294 34 67 chr3 29664224 29664610 -129935173 - MTE2b LTR MaLR -6 373 1 2 811 259 287 58 0 chr3 29665354 29665441 -129934342 + PB1D10 SINE Alu 3 94 -23 2 811 1641 27 0 0 chr3 29665722 29665909 -129933874 + B2_Mm1a SINE B2 2 188 -5 2 811 360 316 63 27 chr3 29665963 29666184 -129933599 - L1M5 LINE L1 -2211 3935 3707 2 811 405 0 0 0 chr3 29666559 29666604 -129933179 + (TG)n Simple_repeat Simple_repeat 1 45 0 2 811 670 220 150 18 chr3 29666604 29666771 -129933012 - B3 SINE B2 -24 192 4 2 811 565 339 33 27 chr3 29667759 29668018 -129931765 - ORR1E LTR MaLR -105 269 1 2 811 2170 138 3 0 chr3 29668184 29668510 -129931273 - ORR1A2 LTR MaLR 0 327 1 2 811 315 128 0 41 chr3 29668548 29668597 -129931186 - HAL1-3A_ME LINE L1 -837 2021 1975 2 811 504 175 0 0 chr3 29668599 29668696 -129931087 + (TA)n Simple_repeat Simple_repeat 2 98 0 2 811 234 346 47 41 chr3 29669099 29669268 -129930515 - MamRep137 DNA TcMar? -145 299 130 2 811 315 0 0 0 chr3 29669389 29669424 -129930359 + (TA)n Simple_repeat Simple_repeat 2 36 0 2 811 764 239 56 33 chr3 29669636 29669875 -129929908 - ORR1E LTR MaLR 0 379 105 2 811 603 0 0 0 chr3 29672609 29672676 -129927107 + (TAGA)n Simple_repeat Simple_repeat 4 70 0 2 811 414 341 60 78 chr3 29672757 29673040 -129926743 + B4 SINE B4 2 279 -13 2 811 459 359 6 13 chr3 29673088 29673246 -129926537 + RSINE1 SINE B4 1 157 -8 2 811 229 330 109 65 chr3 29673090 29673291 -129926492 + B3 SINE B2 2 211 -5 2 811 293 348 182 35 chr3 29674076 29674219 -129925564 - RSINE1 SINE B4 0 165 2 2 811 398 267 58 58 chr3 29674489 29674644 -129925139 + RSINE1 SINE B4 11 165 0 2 811 321 68 0 0 chr3 29674655 29674699 -129925084 + (CA)n Simple_repeat Simple_repeat 1 44 0 2 811 365 120 108 20 chr3 29675139 29675241 -129924542 - Lx9 LINE L1 -1 7643 7533 2 811 1142 62 0 7 chr3 29677051 29677196 -129922587 - B1_Mus1 SINE Alu -2 146 3 2 811 2138 122 20 6 chr3 29677451 29677805 -129921978 - RLTR15 LTR ERVK 0 359 1 2 811 24 32 0 0 chr3 29677856 29677887 -129921896 + AT_rich Low_complexity Low_complexity 1 31 0 2 811 477 0 0 0 chr3 29677892 29677945 -129921838 + (TAGA)n Simple_repeat Simple_repeat 2 54 0 2 811 2560 203 96 69 chr3 29678029 29679120 -129920663 - MYSERV6-int LTR ERVK -173 8786 7816 2 811 249 226 56 133 chr3 29679120 29679245 -129920538 - RMER4B LTR ERVK -49 536 309 2 811 1027 260 42 79 chr3 29679270 29679470 -129920313 - MYSERV6-int LTR ERVK -1429 897 706 2 811 2291 40 0 0 chr3 29679470 29679744 -129920039 - L1Md_T LINE L1 0 6582 6309 2 811 1027 260 42 79 chr3 29679744 29680039 -129919744 - MYSERV6-int LTR ERVK -1621 705 420 2 811 252 207 0 0 chr3 29680049 29680107 -129919676 - RMER3D-int LTR ERVK -1488 1354 1297 2 811 802 150 0 7 chr3 29680143 29680284 -129919499 - Lx2 LINE L1 -948 6049 5910 2 811 659 305 79 22 chr3 29680327 29680555 -129919228 + B4A SINE B4 52 292 0 2 811 198 0 0 0 chr3 29680619 29680641 -129919142 + (CA)n Simple_repeat Simple_repeat 1 22 0 2 811 3855 57 6 0 chr3 29680740 29681248 -129918535 + L1Md_F2 LINE L1 5076 5586 -297 2 811 8286 37 1 2 chr3 29681248 29682233 -129917550 + L1Md_F2 LINE L1 5587 6570 -12 2 811 3229 44 5 0 chr3 29682290 29682673 -129917110 - IAPEY_LTR LTR ERVK 0 385 1 2 811 4391 124 62 31 chr3 29682918 29684019 -129915764 + L1Md_F LINE L1 290 1407 -4476 2 811 2876 56 0 0 chr3 29684029 29684386 -129915397 + L1Md_T LINE L1 6226 6582 0 2 811 484 169 227 8 chr3 29684445 29684564 -129915219 - B1F1 SINE Alu -3 146 2 2 811 688 304 25 8 chr3 29685442 29685633 -129914150 + B3A SINE B2 1 186 -30 2 811 761 265 32 0 chr3 29686651 29686836 -129912947 - B3A SINE B2 -7 191 1 2 811 411 340 12 31 chr3 29687037 29687198 -129912585 + RSINE1 SINE B4 4 161 -4 2 811 669 92 0 0 chr3 29687205 29687303 -129912480 + (TC)n Simple_repeat Simple_repeat 1 98 0 2 811 181 302 95 0 chr3 29687751 29687814 -129911969 - L2a LINE L2 -20 3406 3338 2 811 601 307 59 22 chr3 29688502 29688775 -129911008 - Lx8 LINE L1 -240 7233 6951 2 811 21 36 0 0 chr3 29688815 29688843 -129910940 + AT_rich Low_complexity Low_complexity 1 28 0 2 811 257 311 47 0 chr3 29688857 29688937 -129910846 + PB1D7 SINE Alu 6 89 -60 2 811 207 182 0 0 chr3 29688946 29688979 -129910804 + polypurine Low_complexity Low_complexity 3 35 0 2 811 399 138 0 0 chr3 29688979 29689066 -129910717 + (TC)n Simple_repeat Simple_repeat 2 88 0 2 811 294 95 0 0 chr3 29689066 29689108 -129910675 + (CA)n Simple_repeat Simple_repeat 1 42 0 2 811 198 128 0 0 chr3 29689119 29689158 -129910625 + (CAGA)n Simple_repeat Simple_repeat 2 40 0 2 811 246 32 0 0 chr3 29689734 29689765 -129910018 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2 811 356 355 42 76 chr3 29690196 29690434 -129909349 + B4 SINE B4 43 272 -20 2 811 217 305 17 0 chr3 29690516 29690575 -129909208 + RSINE1 SINE B4 87 146 -19 2 811 365 289 8 50 chr3 29691524 29691644 -129908139 + ID_B1 SINE B4 109 223 -1 2 811 21 89 0 0 chr3 29692095 29692151 -129907632 + AT_rich Low_complexity Low_complexity 1 56 0 2 811 25 51 0 0 chr3 29692218 29692257 -129907526 + AT_rich Low_complexity Low_complexity 1 39 0 2 811 206 326 130 50 chr3 29693054 29693254 -129906529 - MIRb SINE MIR -27 241 26 2 811 420 20 0 0 chr3 29693359 29693408 -129906375 + (TG)n Simple_repeat Simple_repeat 2 50 0 2 811 412 259 45 18 chr3 29693408 29693518 -129906265 - B3 SINE B2 -51 165 53 2 811 2493 247 62 28 chr3 29695407 29696185 -129903598 + Lx7 LINE L1 6629 7432 -264 2 811 189 74 0 0 chr3 29696197 29696224 -129903559 + (TTTA)n Simple_repeat Simple_repeat 1 27 0 2 811 407 185 16 48 chr3 29696352 29696477 -129903306 + Lx7 LINE L1 7576 7696 0 2 811 479 286 132 63 chr3 29696697 29697023 -129902760 + MTE2a LTR MaLR 6 377 -2 2 811 225 0 0 0 chr3 29697122 29697147 -129902636 + (A)n Simple_repeat Simple_repeat 1 25 0 2 811 236 314 37 61 chr3 29697391 29697554 -129902229 + MER34A LTR ERV1 402 560 -11 2 811 22 0 0 0 chr3 29697760 29697782 -129902001 + AT_rich Low_complexity Low_complexity 1 22 0 2 811 1908 174 52 3 chr3 29697821 29698167 -129901616 - ORR1B2 LTR MaLR 0 367 5 2 811 507 33 0 0 chr3 29698181 29698242 -129901541 + (TA)n Simple_repeat Simple_repeat 1 61 0 2 811 239 237 50 40 chr3 29699325 29699426 -129900357 + Lx8 LINE L1 7368 7469 -4 2 811 800 145 0 7 chr3 29700991 29701137 -129898646 + CT-rich Low_complexity Low_complexity 1 145 0 2 811 207 0 0 0 chr3 29701400 29701423 -129898360 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 2 811 275 274 0 23 chr3 29702839 29702925 -129896858 - Lx7 LINE L1 -18 7678 7595 2 811 22 56 0 0 chr3 29703177 29703213 -129896570 + AT_rich Low_complexity Low_complexity 1 36 0 2 811 186 181 47 9 chr3 29703225 29703331 -129896452 + (TA)n Simple_repeat Simple_repeat 2 111 0 3 811 25 31 0 0 chr3 29703332 29703364 -129896419 + AT_rich Low_complexity Low_complexity 1 32 0 3 811 346 305 106 43 chr3 29704187 29704348 -129895435 + L1MCb LINE L1 567 737 -5308 3 811 1177 177 57 56 chr3 29704899 29705205 -129894578 + ORR1C2 LTR MaLR 2 267 -111 3 811 217 400 12 0 chr3 29705279 29705359 -129894424 + ID2 SINE ID 3 83 0 3 811 297 351 121 50 chr3 29705795 29706376 -129893407 - L2a LINE L2 -140 3286 2665 3 811 307 310 62 11 chr3 29706968 29707144 -129892639 + L1M5 LINE L1 5588 5772 -468 3 811 1019 31 8 0 chr3 29707195 29707322 -129892461 + (TAGA)n Simple_repeat Simple_repeat 2 129 0 3 811 873 253 133 78 chr3 29707414 29707694 -129892089 + Lx8 LINE L1 6927 7241 -232 3 811 3248 95 9 0 chr3 29707694 29708147 -129891636 - L1_Mus3 LINE L1 -7 6631 6175 3 811 873 253 133 78 chr3 29708147 29708377 -129891406 + Lx8 LINE L1 7242 7465 -8 3 811 763 224 57 10 chr3 29708591 29708785 -129890998 - B3 SINE B2 -10 206 4 3 811 507 314 55 14 chr3 29709696 29709929 -129889854 + B4 SINE B4 4 242 -50 3 811 249 226 0 36 chr3 29709931 29709986 -129889797 + polypurine Low_complexity Low_complexity 1 53 0 3 811 552 89 0 0 chr3 29710126 29710205 -129889578 + (CA)n Simple_repeat Simple_repeat 2 80 0 3 811 234 0 0 0 chr3 29712198 29712224 -129887559 + (TA)n Simple_repeat Simple_repeat 2 27 0 3 811 1111 62 26 13 chr3 29714673 29714981 -129884802 + (TC)n Simple_repeat Simple_repeat 1 312 0 3 811 1028 281 42 58 chr3 29715910 29716269 -129883514 + MTD LTR MaLR 23 375 -44 3 811 765 0 0 0 chr3 29716328 29716413 -129883370 + (GGAAA)n Simple_repeat Simple_repeat 2 86 0 3 811 268 340 88 0 chr3 29717041 29717079 -129882704 - L1M4 LINE L1 -1197 4949 4911 3 811 180 0 0 0 chr3 29717079 29717099 -129882684 + (TTG)n Simple_repeat Simple_repeat 2 21 0 3 811 274 269 66 16 chr3 29717099 29717220 -129882563 - L1M4 LINE L1 -1244 4902 4776 3 811 329 285 107 58 chr3 29717238 29717443 -129882340 - L1M4 LINE L1 -1435 4711 4497 3 811 234 0 0 0 chr3 29717446 29717472 -129882311 + (TTTG)n Simple_repeat Simple_repeat 1 26 0 3 811 226 325 88 9 chr3 29717510 29717737 -129882046 - L1MC1 LINE L1 0 6333 6089 3 811 518 313 49 23 chr3 29717892 29718157 -129881626 - L1MC1 LINE L1 -480 5853 5582 3 811 398 301 65 37 chr3 29718384 29718815 -129880968 - L1MC1 LINE L1 -912 5234 4792 3 811 225 216 54 0 chr3 29718838 29718912 -129880871 - L1MC1 LINE L1 -1407 4739 4662 3 811 789 337 14 53 chr3 29718970 29719252 -129880531 - B4A SINE B4 -1 291 21 3 811 647 296 166 10 chr3 29719315 29719834 -129879949 - L1MC1 LINE L1 -1525 4621 4022 3 811 281 339 32 116 chr3 29719882 29720072 -129879711 + B3A SINE B2 6 179 -19 3 811 2115 119 22 0 chr3 29722963 29723283 -129876500 - ORR1A4 LTR MaLR 0 329 3 3 811 759 308 49 12 chr3 29723345 29723588 -129876195 + B4 SINE B4 3 254 -38 3 811 486 0 0 0 chr3 29723589 29723643 -129876140 + (TC)n Simple_repeat Simple_repeat 1 54 0 3 811 351 0 0 0 chr3 29723643 29723681 -129876102 + (CA)n Simple_repeat Simple_repeat 1 39 0 3 811 186 167 0 0 chr3 29723685 29723721 -129876062 + (CCA)n Simple_repeat Simple_repeat 1 36 0 3 811 201 417 69 35 chr3 29725663 29725894 -129873889 - MIR SINE MIR -19 243 5 3 811 245 343 130 10 chr3 29726914 29727014 -129872769 - B4A SINE B4 -2 290 179 3 811 207 0 0 0 chr3 29727449 29727472 -129872311 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 3 811 237 313 82 24 chr3 29727637 29727843 -129871940 - L1MA9 LINE L1 -69 6243 6026 3 811 226 219 0 0 chr3 29727931 29727972 -129871811 + (TG)n Simple_repeat Simple_repeat 2 42 0 3 811 242 275 128 0 chr3 29727972 29728121 -129871662 - L1M3 LINE L1 -1898 4242 4075 3 811 26 50 0 0 chr3 29728165 29728205 -129871578 + AT_rich Low_complexity Low_complexity 1 40 0 3 811 728 237 81 20 chr3 29728354 29728385 -129871398 - B3 SINE B2 -6 210 180 3 811 297 0 0 0 chr3 29728385 29728418 -129871365 + (TATG)n Simple_repeat Simple_repeat 3 35 0 3 811 728 237 81 20 chr3 29728418 29728584 -129871199 - B3 SINE B2 -37 179 2 3 811 254 318 72 9 chr3 29730322 29730433 -129869350 + Tigger12 DNA MER2_type 1776 1893 -66 3 811 187 299 63 25 chr3 29730616 29730695 -129869088 - L4 LINE RTE -1082 947 866 3 811 316 244 134 0 chr3 29730785 29730867 -129868916 + MTE2b LTR MaLR 1 93 -286 3 811 235 276 0 0 chr3 29730873 29730931 -129868852 + MTE2b LTR MaLR 240 297 -82 3 811 233 200 0 22 chr3 29730916 29730962 -129868821 + MTE2b LTR MaLR 253 297 -82 3 811 479 205 0 35 chr3 29730954 29731070 -129868713 + MTE2b LTR MaLR 260 371 -8 3 811 243 0 0 0 chr3 29731479 29731506 -129868277 + (TC)n Simple_repeat Simple_repeat 1 27 0 3 811 183 42 0 0 chr3 29731506 29731530 -129868253 + (CA)n Simple_repeat Simple_repeat 1 24 0 3 811 428 0 19 0 chr3 29731890 29731942 -129867841 + (CA)n Simple_repeat Simple_repeat 2 54 0 3 811 290 304 8 16 chr3 29732071 29732198 -129867585 - L1M5 LINE L1 -1133 5013 4888 3 811 324 331 102 36 chr3 29732524 29732856 -129866927 - L1M5 LINE L1 -1642 4504 4151 3 811 238 219 31 0 chr3 29733529 29733593 -129866190 + GA-rich Low_complexity Low_complexity 2 67 0 3 811 189 74 0 0 chr3 29733593 29733620 -129866163 + (GA)n Simple_repeat Simple_repeat 2 28 0 3 811 690 162 0 0 chr3 29733638 29733798 -129865985 + GA-rich Low_complexity Low_complexity 1 160 0 3 811 22 35 0 0 chr3 29734213 29734242 -129865541 + AT_rich Low_complexity Low_complexity 1 29 0 3 811 27 29 0 0 chr3 29735596 29735630 -129864153 + AT_rich Low_complexity Low_complexity 1 34 0 3 811 2236 207 42 15 chr3 29735736 29736255 -129863528 - Lx9 LINE L1 -481 7163 6631 3 811 312 194 47 131 chr3 29736255 29736362 -129863421 + MT2B LTR ERVL 167 264 -337 3 811 899 58 0 8 chr3 29736276 29736398 -129863385 + B1_Mus1 SINE Alu 28 148 0 3 811 1080 242 16 9 chr3 29736464 29736785 -129862998 + Lx9 LINE L1 7317 7639 -5 3 811 240 35 0 0 chr3 29736849 29736878 -129862905 + (TCTA)n Simple_repeat Simple_repeat 1 29 0 3 811 3957 51 0 0 chr3 29736985 29737494 -129862289 + L1Md_F2 LINE L1 5078 5586 -297 3 811 7979 50 2 11 chr3 29737494 29738496 -129861287 + L1Md_F2 LINE L1 5587 6579 -3 3 811 272 311 0 13 chr3 29738637 29738712 -129861071 - ID4 SINE ID 0 83 10 3 811 734 32 11 0 chr3 29739914 29740007 -129859776 + (TTCTC)n Simple_repeat Simple_repeat 3 96 0 3 811 306 311 83 31 chr3 29740134 29740591 -129859192 + L1M5 LINE L1 2703 3183 -2963 3 811 219 111 0 0 chr3 29740904 29740940 -129858843 + B3 SINE B2 2 37 -179 3 811 3015 94 11 22 chr3 29740943 29741388 -129858395 + Lx LINE L1 6211 6650 -4 3 811 322 259 112 35 chr3 29741403 29741519 -129858264 + HAL1-3A_ME LINE L1 2666 2790 -68 3 811 456 125 54 15 chr3 29741524 29741654 -129858129 + GA-rich Low_complexity Low_complexity 2 136 0 3 811 785 268 77 0 chr3 29741654 29741848 -129857935 + B3 SINE B2 1 209 -7 3 811 512 80 40 0 chr3 29743118 29743218 -129856565 + (TAGA)n Simple_repeat Simple_repeat 4 107 0 3 811 262 146 0 35 chr3 29748546 29748603 -129851180 - B3 SINE B2 -7 209 155 3 811 234 286 0 14 chr3 29749843 29749914 -129849869 + (TG)n Simple_repeat Simple_repeat 2 71 0 3 811 483 219 6 27 chr3 29749929 29750112 -129849671 + (TA)n Simple_repeat Simple_repeat 1 179 0 3 811 221 289 0 26 chr3 29750123 29750201 -129849582 + (TATATG)n Simple_repeat Simple_repeat 6 81 0 3 811 235 200 0 0 chr3 29750142 29750187 -129849596 + (TG)n Simple_repeat Simple_repeat 2 46 0 3 811 314 218 85 49 chr3 29750746 29750828 -129848955 - PB1D10 SINE Alu 0 117 33 3 811 393 70 0 0 chr3 29752682 29752739 -129847044 + (CA)n Simple_repeat Simple_repeat 1 57 0 3 811 302 336 8 0 chr3 29752753 29752878 -129846905 + (CATA)n Simple_repeat Simple_repeat 1 126 0 3 101 1052 271 66 35 chr3 29753111 29753927 -129845856 - Lx9 LINE L1 -1077 6567 5564 3 812 241 280 0 0 chr3 29753961 29754011 -129845772 + MTD LTR MaLR 138 187 -232 3 812 2335 164 32 10 chr3 29754011 29754505 -129845278 + L1_Mur2 LINE L1 4596 5100 -777 3 812 3161 173 15 11 chr3 29754502 29755157 -129844626 - L1_Mur1 LINE L1 -3289 2597 1940 3 812 5208 167 34 8 chr3 29755140 29756479 -129843304 + Lx2B LINE L1 4806 6199 -801 3 812 897 205 4 103 chr3 29756675 29756909 -129842874 + B3 SINE B2 2 212 -4 3 812 495 294 18 36 chr3 29756996 29757162 -129842621 + RSINE1 SINE B4 3 165 0 3 812 372 371 46 19 chr3 29757209 29757470 -129842313 + L1ME1 LINE L1 5911 6178 -1 3 812 238 305 39 8 chr3 29757648 29757777 -129842006 - L1M1 LINE L1 -675 5625 5493 3 812 541 232 206 21 chr3 29758035 29758229 -129841554 + B4A SINE B4 1 230 -62 3 812 723 286 28 18 chr3 29758908 29759125 -129840658 + ID_B1 SINE B4 5 223 -1 3 812 225 233 14 14 chr3 29759228 29759302 -129840481 + (TA)n Simple_repeat Simple_repeat 1 74 0 3 812 701 307 35 60 chr3 29759450 29759706 -129840077 + B4 SINE B4 16 270 -22 3 812 240 35 0 0 chr3 29759706 29759735 -129840048 + (CA)n Simple_repeat Simple_repeat 1 29 0 3 812 701 307 35 60 chr3 29759735 29759762 -129840021 + B4 SINE B4 271 292 0 3 812 380 368 24 88 chr3 29760458 29760628 -129839155 - RSINE1 SINE B4 0 165 7 3 812 21 0 0 0 chr3 29760724 29760745 -129839038 + AT_rich Low_complexity Low_complexity 1 21 0 3 812 186 43 0 0 chr3 29760762 29760785 -129838998 + (TTTA)n Simple_repeat Simple_repeat 1 23 0 3 812 225 0 0 0 chr3 29760824 29760849 -129838934 + (TA)n Simple_repeat Simple_repeat 2 26 0 3 812 297 211 68 27 chr3 29760849 29760922 -129838861 - B1F SINE Alu -73 76 1 3 812 25 75 0 0 chr3 29761180 29761233 -129838550 + AT_rich Low_complexity Low_complexity 1 53 0 3 812 774 300 84 14 chr3 29761325 29761622 -129838161 + RCHARR1 DNA MER1_type 8 325 -649 3 812 1050 243 83 24 chr3 29761619 29761894 -129837889 + RCHARR1 DNA MER1_type 615 907 -67 3 812 450 0 0 0 chr3 29761894 29761944 -129837839 + (TA)n Simple_repeat Simple_repeat 1 50 0 3 812 1050 243 83 24 chr3 29761944 29762005 -129837778 + RCHARR1 DNA MER1_type 908 970 -4 3 812 23 0 0 0 chr3 29762144 29762167 -129837616 + AT_rich Low_complexity Low_complexity 1 23 0 3 812 804 311 75 12 chr3 29762623 29762945 -129836838 - MLT1A0 LTR MaLR -12 353 12 3 812 1305 240 59 3 chr3 29764067 29764520 -129835263 - Lx7 LINE L1 -1524 5949 5482 3 812 560 274 81 14 chr3 29764905 29765053 -129834730 + B4A SINE B4 113 270 -22 3 812 36300 29 0 0 chr3 29765053 29771712 -129828071 - L1Md_T LINE L1 0 6585 1 3 812 21 0 0 0 chr3 29771843 29771864 -129827919 + AT_rich Low_complexity Low_complexity 1 21 0 4 812 188 294 97 56 chr3 29773729 29773873 -129825910 - MIR SINE MIR -95 167 18 4 812 252 59 0 0 chr3 29775185 29775219 -129824564 + (CA)n Simple_repeat Simple_repeat 1 34 0 4 812 413 328 15 39 chr3 29775428 29775558 -129824225 + RSINE1 SINE B4 5 131 -34 4 812 450 0 0 0 chr3 29775592 29775642 -129824141 + (TATG)n Simple_repeat Simple_repeat 2 51 0 4 812 3392 28 8 0 chr3 29775643 29776035 -129823748 - MTA_Mm LTR MaLR 0 396 2 4 812 1040 36 36 12 chr3 29776037 29776204 -129823579 + (TCTA)n Simple_repeat Simple_repeat 4 174 0 4 812 279 0 0 0 chr3 29776672 29776703 -129823080 + (TG)n Simple_repeat Simple_repeat 2 32 0 4 812 405 95 23 23 chr3 29776703 29776789 -129822994 + (TAGA)n Simple_repeat Simple_repeat 2 87 0 4 812 302 115 0 19 chr3 29776945 29776998 -129822785 + (TA)n Simple_repeat Simple_repeat 2 53 0 4 812 22 0 0 0 chr3 29777148 29777170 -129822613 + AT_rich Low_complexity Low_complexity 1 22 0 4 812 201 228 40 40 chr3 29777729 29777880 -129821903 + (CAGAGA)n Simple_repeat Simple_repeat 3 153 0 4 812 306 0 0 0 chr3 29778185 29778219 -129821564 + (GA)n Simple_repeat Simple_repeat 1 34 0 4 812 623 185 7 0 chr3 29779481 29779632 -129820151 + (CA)n Simple_repeat Simple_repeat 1 152 0 4 812 345 274 53 9 chr3 29779805 29779919 -129819864 + ORR1D1 LTR MaLR 2 120 -254 4 812 876 193 37 56 chr3 29779888 29780102 -129819681 + RLTR20B3 LTR ERVK 22 231 -346 4 812 394 383 36 10 chr3 29780112 29780307 -129819476 + B4A SINE B4 91 290 -2 4 812 24 32 0 0 chr3 29780805 29780836 -129818947 + AT_rich Low_complexity Low_complexity 1 31 0 4 812 256 171 0 0 chr3 29781537 29781578 -129818205 + Lx LINE L1 6107 6147 -507 4 812 983 215 54 38 chr3 29781578 29781839 -129817944 + RMER19C LTR ERVK 347 611 0 4 812 446 339 28 16 chr3 29782041 29782323 -129817460 - L1MA4A LINE L1 -327 5973 5679 4 812 272 213 124 54 chr3 29782337 29782466 -129817317 - L1MA4A LINE L1 -675 5625 5488 4 812 335 292 0 74 chr3 29783164 29783286 -129816497 + PB1 SINE Alu 1 113 -14 4 812 1975 158 68 32 chr3 29783318 29783698 -129816085 - ORR1B1 LTR MaLR 0 394 1 4 812 4968 37 0 2 chr3 29783718 29784310 -129815473 + L1Md_T LINE L1 5992 6582 0 4 812 216 188 0 0 chr3 29784368 29784416 -129815367 + A-rich Low_complexity Low_complexity 1 48 0 4 812 338 0 24 0 chr3 29785505 29785547 -129814236 + (TC)n Simple_repeat Simple_repeat 2 44 0 4 812 818 310 32 14 chr3 29785823 29786042 -129813741 + ID_B1 SINE B4 2 224 0 4 812 273 119 0 0 chr3 29786053 29786095 -129813688 + (GGGA)n Simple_repeat Simple_repeat 4 45 0 4 812 785 302 138 16 chr3 29786477 29786911 -129812872 + Lx8 LINE L1 6958 7444 -29 4 812 227 333 24 12 chr3 29787124 29787209 -129812574 + MLT1A1 LTR MaLR 1 86 -322 4 812 236 289 16 90 chr3 29787268 29787469 -129812314 + MTE2a LTR MaLR 197 373 -6 4 812 719 335 20 51 chr3 29787554 29787847 -129811936 + B4A SINE B4 9 292 0 4 812 197 324 0 0 chr3 29787892 29787963 -129811820 + MIR SINE MIR 137 207 -55 4 812 396 59 0 0 chr3 29789597 29789648 -129810135 + (GA)n Simple_repeat Simple_repeat 2 52 0 4 812 564 15 0 0 chr3 29791207 29791272 -129808511 + (CA)n Simple_repeat Simple_repeat 2 66 0 4 812 485 339 30 50 chr3 29792871 29793073 -129806710 + B4 SINE B4 2 199 -93 4 812 306 0 0 0 chr3 29793141 29793175 -129806608 + (TA)n Simple_repeat Simple_repeat 2 35 0 4 812 297 0 0 0 chr3 29793175 29793207 -129806576 + (TG)n Simple_repeat Simple_repeat 2 34 0 4 812 310 279 0 34 chr3 29793497 29793586 -129806197 + GA-rich Low_complexity Low_complexity 1 86 0 4 812 224 379 81 53 chr3 29794376 29794585 -129805198 - L2a LINE L2 -183 3243 3029 4 812 3498 47 0 0 chr3 29795857 29796281 -129803502 + L1_Mus1 LINE L1 6144 6567 0 4 812 734 74 28 0 chr3 29796289 29796397 -129803386 + (GAAAA)n Simple_repeat Simple_repeat 2 112 0 4 812 24 0 0 0 chr3 29796830 29796854 -129802929 + AT_rich Low_complexity Low_complexity 1 24 0 4 812 23 0 0 0 chr3 29797531 29797554 -129802229 + AT_rich Low_complexity Low_complexity 1 23 0 4 812 250 262 90 60 chr3 29797930 29798064 -129801719 + B3A SINE B2 2 139 -59 4 812 198 0 0 0 chr3 29798842 29798864 -129800919 + (TTG)n Simple_repeat Simple_repeat 3 24 0 4 812 348 43 0 0 chr3 29799551 29799597 -129800186 + (TG)n Simple_repeat Simple_repeat 2 47 0 4 812 216 67 0 0 chr3 29800272 29800302 -129799481 + (TTTTG)n Simple_repeat Simple_repeat 4 33 0 4 812 397 284 99 33 chr3 29801150 29801332 -129798451 - B3A SINE B2 -4 194 1 4 812 2740 108 69 22 chr3 29803824 29804286 -129795497 + Lx3A LINE L1 6473 6956 -25 4 812 645 147 0 0 chr3 29804286 29804395 -129795388 + (GA)n Simple_repeat Simple_repeat 1 109 0 4 812 221 365 23 16 chr3 29805633 29805761 -129794022 + L2c LINE L2 3024 3152 -235 4 812 214 341 0 0 chr3 29805891 29805935 -129793848 + B1F SINE Alu 8 51 -98 4 812 181 377 14 0 chr3 29806966 29807035 -129792748 - L2a LINE L2 0 3426 3357 4 812 209 211 54 32 chr3 29807413 29807506 -129792277 + (TAGA)n Simple_repeat Simple_repeat 4 98 0 4 812 1128 70 17 0 chr3 29807517 29807689 -129792094 + (TAGA)n Simple_repeat Simple_repeat 2 176 0 4 812 250 281 98 33 chr3 29807730 29807822 -129791961 + LTR16A LTR ERVL 190 287 -164 4 812 313 336 35 14 chr3 29808228 29808370 -129791413 + MLT1F LTR MaLR 105 249 -299 4 812 334 319 17 19 chr3 29808661 29808802 -129790981 + PB1D10 SINE Alu 7 149 0 4 812 35670 23 1 8 chr3 29809981 29815193 -129784590 + L1Md_A LINE L1 411 5586 -297 4 812 8320 38 1 0 chr3 29815193 29816188 -129783595 + L1Md_A LINE L1 5587 6582 0 4 812 200 222 0 0 chr3 29816878 29816923 -129782860 + A-rich Low_complexity Low_complexity 1 45 0 4 812 4939 52 9 29 chr3 29817174 29817823 -129781960 - L1_Mus2 LINE L1 -1 6565 5930 4 812 2645 52 0 0 chr3 29817829 29818173 -129781610 + L1_Mus2 LINE L1 5588 5931 -635 4 812 294 227 0 0 chr3 29818313 29818388 -129781395 + (CA)n Simple_repeat Simple_repeat 2 76 0 4 812 266 400 32 32 chr3 29819212 29819496 -129780287 + ORR1E LTR MaLR 24 307 -52 4 812 5222 68 3 40 chr3 29819504 29819634 -129780149 - L1Md_F2 LINE L1 -15 6567 6446 4 812 2325 88 22 3 chr3 29819634 29819955 -129779828 + IAPLTR2b LTR ERVK 1 327 0 4 812 5222 68 3 40 chr3 29819955 29820549 -129779234 - L1Md_F2 LINE L1 -137 6445 5870 4 812 2243 91 0 6 chr3 29820549 29820874 -129778909 + L1_Mm LINE L1 4462 4785 -1098 4 812 386 306 55 37 chr3 29821184 29821455 -129778328 + L1MA9 LINE L1 5953 6228 -84 4 812 333 68 0 0 chr3 29821478 29821522 -129778261 + (TA)n Simple_repeat Simple_repeat 1 44 0 4 812 264 383 9 0 chr3 29821673 29821788 -129777995 + ERVL-B4-int LTR ERVL 4145 4260 -1454 4 812 250 379 39 0 chr3 29823058 29823161 -129776622 + LTR16A LTR ERVL 345 451 0 4 812 517 61 78 0 chr3 29823422 29823537 -129776246 + (TAGA)n Simple_repeat Simple_repeat 2 125 0 4 812 563 0 15 0 chr3 29823887 29823954 -129775829 + (GA)n Simple_repeat Simple_repeat 2 69 0 4 812 4495 99 9 19 chr3 29825896 29826574 -129773209 - L1_Mus3 LINE L1 -5 6633 5963 4 812 657 115 0 0 chr3 29826574 29826670 -129773113 + L1_Mm LINE L1 5410 5505 -378 4 812 216 67 0 0 chr3 29826985 29827015 -129772768 + (TAAAA)n Simple_repeat Simple_repeat 2 31 0 4 812 249 320 113 98 chr3 29827181 29827375 -129772408 + MER115 DNA Tip100 372 568 -125 4 812 289 216 64 51 chr3 29827758 29827836 -129771947 + RLTR25B LTR ERVK 431 509 -519 4 812 396 168 44 61 chr3 29827767 29827778 -129772005 + ID_B1 SINE B4 113 222 0 4 812 813 40 0 0 chr3 29827778 29827879 -129771904 + B1_Mus2 SINE Alu 47 147 0 4 812 189 0 0 0 chr3 29827881 29827902 -129771881 + (A)n Simple_repeat Simple_repeat 1 21 0 4 812 604 217 44 153 chr3 29828289 29828583 -129771200 - Lx6 LINE L1 -57 7403 7142 4 812 226 305 94 0 chr3 29828591 29828719 -129771064 - Lx6 LINE L1 -1415 6045 5906 4 812 185 386 62 17 chr3 29829554 29829733 -129770050 - L2 LINE L2 -564 2855 2669 4 812 407 271 40 48 chr3 29830095 29830219 -129769564 + RSINE1 SINE B4 15 137 -28 4 812 1267 265 35 58 chr3 29830228 29830453 -129769330 - MTC LTR MaLR 0 421 191 4 812 4189 74 4 16 chr3 29830453 29831016 -129768767 + L1_Mus2 LINE L1 6011 6566 0 4 812 1267 265 35 58 chr3 29831016 29831219 -129768564 - MTC LTR MaLR -231 190 3 4 812 29 28 0 0 chr3 29831219 29831255 -129768528 + AT_rich Low_complexity Low_complexity 1 36 0 4 812 319 287 54 108 chr3 29831276 29831534 -129768249 + HAL1 LINE L1 2111 2354 -153 4 812 267 269 12 25 chr3 29831668 29831748 -129768035 + B4 SINE B4 2 80 -212 4 812 2066 241 41 28 chr3 29831882 29832519 -129767264 + MYSERV-int LTR ERVK 3777 4421 -2129 4 812 710 310 25 13 chr3 29832714 29832949 -129766834 + MTE2a LTR MaLR 7 244 -135 4 812 227 292 35 70 chr3 29833049 29833163 -129766620 + B4A SINE B4 130 239 -53 4 812 246 62 0 0 chr3 29833257 29833289 -129766494 + (CA)n Simple_repeat Simple_repeat 1 32 0 4 812 235 263 91 0 chr3 29833370 29833469 -129766314 - L1ME1 LINE L1 -18 6155 6048 4 812 333 325 80 22 chr3 29833542 29833809 -129765974 - L1ME1 LINE L1 -213 5966 5686 4 812 350 345 42 46 chr3 29833827 29834067 -129765716 - L1ME1 LINE L1 -545 5628 5390 4 812 266 273 0 0 chr3 29834659 29834725 -129765058 + (CA)n Simple_repeat Simple_repeat 1 66 0 4 812 475 54 54 0 chr3 29835339 29835431 -129764352 + (CAAA)n Simple_repeat Simple_repeat 2 98 0 4 812 5157 86 72 99 chr3 29835433 29836351 -129763432 - RLTR13B1 LTR ERVK 0 893 1 4 812 409 289 75 16 chr3 29836752 29836938 -129762845 - MIR3 SINE MIR -61 207 2 4 812 351 343 28 7 chr3 29837609 29837750 -129762033 - B1F SINE Alu 0 149 6 4 812 274 320 98 20 chr3 29837878 29837980 -129761803 + PB1D10 SINE Alu 1 110 -7 4 812 183 42 0 0 chr3 29838137 29838161 -129761622 + (TCTG)n Simple_repeat Simple_repeat 1 24 0 4 812 1274 29 0 37 chr3 29838162 29838377 -129761406 + (TCTCCC)n Simple_repeat Simple_repeat 1 206 0 5 812 384 22 0 0 chr3 29838378 29838423 -129761360 + (TC)n Simple_repeat Simple_repeat 1 45 0 5 812 229 255 0 0 chr3 29838423 29838474 -129761309 + (CA)n Simple_repeat Simple_repeat 2 52 0 5 812 387 233 87 0 chr3 29839273 29839376 -129760407 - PB1 SINE Alu -5 122 11 5 812 369 62 0 0 chr3 29839455 29839503 -129760280 + (TG)n Simple_repeat Simple_repeat 2 49 0 5 812 353 349 39 31 chr3 29839549 29839679 -129760104 - B4A SINE B4 -2 290 160 5 812 273 135 0 0 chr3 29839736 29839788 -129759995 - Lx2 LINE L1 0 6997 6946 5 812 216 0 0 0 chr3 29839788 29839812 -129759971 + (GGGGA)n Simple_repeat Simple_repeat 5 28 0 5 812 436 302 68 29 chr3 29840195 29840629 -129759154 - L1MA4A LINE L1 -385 5918 5470 5 812 2728 89 43 0 chr3 29840629 29841024 -129758759 + Lx LINE L1 6241 6652 -2 5 812 378 312 69 49 chr3 29841024 29841073 -129758710 - L1MA4A LINE L1 -828 5469 5432 5 812 396 0 0 0 chr3 29841073 29841117 -129758666 + (TG)n Simple_repeat Simple_repeat 2 45 0 5 812 1474 291 36 29 chr3 29841117 29841829 -129757954 - L1MA4A LINE L1 -866 5431 4709 5 812 216 0 0 0 chr3 29841910 29841934 -129757849 + (TTTTG)n Simple_repeat Simple_repeat 4 27 0 5 812 192 343 0 29 chr3 29842031 29842100 -129757683 + L3 LINE CR1 2906 2972 -1517 5 812 2214 65 0 0 chr3 29842750 29843041 -129756742 - L1_Mus3 LINE L1 -223 5660 5370 5 812 6274 78 41 30 chr3 29843040 29843997 -129755786 + L1_Mus3 LINE L1 5672 6638 0 5 812 271 328 128 0 chr3 29844053 29844178 -129755605 + B1F SINE Alu 1 141 -8 5 812 256 322 0 0 chr3 29844198 29844257 -129755526 + ID4 SINE ID 8 66 -17 5 812 58 15 0 0 chr3 29844585 29844650 -129755133 + AT_rich Low_complexity Low_complexity 1 65 0 5 812 23 0 0 0 chr3 29844890 29844913 -129754870 + AT_rich Low_complexity Low_complexity 1 23 0 5 812 2915 58 45 0 chr3 29844925 29845304 -129754479 - MTA_Mm LTR MaLR 0 396 1 5 812 967 277 141 31 chr3 29846120 29846758 -129753025 - L1MB2 LINE L1 -4 6167 5460 5 812 216 266 88 12 chr3 29847469 29847549 -129752234 + MIRb SINE MIR 117 202 -66 5 812 306 0 0 0 chr3 29847551 29847585 -129752198 + (TAGA)n Simple_repeat Simple_repeat 1 34 0 5 812 272 271 119 0 chr3 29848043 29848102 -129751681 + tRNA-Ala-GCY_ tRNA tRNA 2 67 -8 5 812 204 40 0 0 chr3 29848377 29848402 -129751381 + (TTAA)n Simple_repeat Simple_repeat 4 28 0 5 812 234 261 90 30 chr3 29848403 29848470 -129751313 - ID4_ SINE ID -6 77 7 5 812 649 298 11 38 chr3 29849338 29849506 -129750277 + B3A SINE B2 7 170 -28 5 812 1154 78 0 6 chr3 29849506 29849687 -129750096 + (CA)n Simple_repeat Simple_repeat 1 180 0 5 812 649 298 11 38 chr3 29849687 29849703 -129750080 + B3A SINE B2 171 186 -12 5 812 438 36 0 0 chr3 29852668 29852724 -129747059 + (TG)n Simple_repeat Simple_repeat 1 56 0 5 812 540 290 12 51 chr3 29852791 29853022 -129746761 - B4 SINE B4 -12 280 14 5 812 234 0 0 0 chr3 29853560 29853586 -129746197 + (TGAA)n Simple_repeat Simple_repeat 2 27 0 5 812 387 0 0 0 chr3 29856888 29856931 -129742852 + (CA)n Simple_repeat Simple_repeat 2 44 0 5 812 199 321 117 44 chr3 29859301 29859433 -129740350 + MIR SINE MIR 58 199 -63 5 812 610 307 78 15 chr3 29859433 29859704 -129740079 + B4A SINE B4 1 288 -4 5 812 260 70 23 0 chr3 29860838 29860881 -129738902 + (TTTG)n Simple_repeat Simple_repeat 2 45 0 5 812 1259 180 277 5 chr3 29862353 29862749 -129737034 + Lx4B LINE L1 6551 7054 -4 5 812 190 290 79 79 chr3 29862886 29862987 -129736796 + MIR3 SINE MIR 94 194 -14 5 812 1077 75 0 0 chr3 29864901 29865035 -129734748 + B1_Mus2 SINE Alu 2 135 -12 5 812 292 0 0 65 chr3 29865038 29865084 -129734699 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 5 812 1394 65 27 0 chr3 29865305 29865491 -129734292 + B2_Mm2 SINE B2 2 192 -3 5 812 264 30 0 0 chr3 29866724 29866757 -129733026 + (CA)n Simple_repeat Simple_repeat 1 33 0 5 812 324 273 0 0 chr3 29868675 29868818 -129730965 + (CA)n Simple_repeat Simple_repeat 2 144 0 5 812 348 24 0 0 chr3 29868823 29868864 -129730919 + (GA)n Simple_repeat Simple_repeat 2 42 0 5 812 939 169 7 0 chr3 29869238 29869386 -129730397 - B1_Mur4 SINE Alu 0 150 2 5 812 21 36 0 0 chr3 29870671 29870699 -129729084 + AT_rich Low_complexity Low_complexity 1 28 0 5 812 251 0 0 56 chr3 29873842 29873878 -129725905 + (CAAAAA)n Simple_repeat Simple_repeat 2 35 0 5 812 26 0 0 0 chr3 29874737 29874763 -129725020 + AT_rich Low_complexity Low_complexity 1 26 0 5 812 229 299 30 0 chr3 29876974 29877041 -129722742 + ID_B1 SINE B4 116 184 -40 5 812 359 330 31 10 chr3 29877417 29877515 -129722268 - PB1D10 SINE Alu -13 104 5 5 812 702 91 0 0 chr3 29882806 29882905 -129716878 + (TTTC)n Simple_repeat Simple_repeat 3 101 0 5 812 186 43 0 0 chr3 29883241 29883264 -129716519 + (CAAA)n Simple_repeat Simple_repeat 3 25 0 5 813 518 192 26 13 chr3 29885048 29885146 -129714637 + polypurine Low_complexity Low_complexity 2 101 0 5 813 1166 102 6 0 chr3 29885146 29885322 -129714461 + (GGGA)n Simple_repeat Simple_repeat 2 178 0 5 813 518 192 26 13 chr3 29885322 29885376 -129714407 + polypurine Low_complexity Low_complexity 102 155 0 5 813 558 124 16 8 chr3 29886704 29886826 -129712957 + (CATA)n Simple_repeat Simple_repeat 2 124 0 5 813 323 86 34 17 chr3 29886827 29886886 -129712897 + (TAGA)n Simple_repeat Simple_repeat 3 62 0 5 813 320 345 114 86 chr3 29887203 29887624 -129712159 + L1MC5 LINE L1 6733 7165 -796 5 813 998 267 39 64 chr3 29888950 29889230 -129710553 + B4 SINE B4 11 283 -9 5 813 1389 57 0 0 chr3 29889271 29889519 -129710264 + (CA)n Simple_repeat Simple_repeat 1 248 0 5 813 221 200 238 48 chr3 29889718 29889802 -129709981 + RSINE1 SINE B4 12 111 -54 5 813 21 71 0 0 chr3 29890390 29890432 -129709351 + AT_rich Low_complexity Low_complexity 1 42 0 5 813 208 301 23 35 chr3 29890687 29890773 -129709010 + GA-rich Low_complexity Low_complexity 2 86 0 5 813 3937 47 2 2 chr3 29890876 29891329 -129708454 + L1Md_F2 LINE L1 6118 6570 -12 5 813 449 174 10 0 chr3 29892097 29892195 -129707588 + GA-rich Low_complexity Low_complexity 1 99 0 5 813 434 101 14 0 chr3 29892745 29892814 -129706969 + (AGGGGG)n Simple_repeat Simple_repeat 5 74 0 5 813 824 241 117 43 chr3 29892842 29893098 -129706685 - B4A SINE B4 -16 276 2 5 813 269 317 48 16 chr3 29893365 29893490 -129706293 - MIRc SINE MIR -107 161 33 5 813 230 292 135 98 chr3 29894840 29894973 -129704810 + MIRb SINE MIR 77 214 -54 5 813 462 256 0 0 chr3 29895125 29895262 -129704521 + (TG)n Simple_repeat Simple_repeat 1 137 0 5 813 592 293 63 6 chr3 29895263 29895421 -129704362 - B4 SINE B4 -94 198 32 5 813 934 237 25 0 chr3 29896067 29896265 -129703518 + B3 SINE B2 3 205 -11 5 813 366 80 0 0 chr3 29898182 29898232 -129701551 + (TGG)n Simple_repeat Simple_repeat 1 50 0 5 813 255 103 0 0 chr3 29899662 29899701 -129700082 + (T)n Simple_repeat Simple_repeat 1 39 0 5 813 211 267 16 32 chr3 29899762 29899824 -129699959 + L4 LINE RTE 1708 1768 -261 5 813 474 33 0 0 chr3 29900210 29900270 -129699513 + (TC)n Simple_repeat Simple_repeat 1 60 0 5 813 23 0 0 0 chr3 29900873 29900896 -129698887 + AT_rich Low_complexity Low_complexity 1 23 0 5 813 306 73 0 0 chr3 29901226 29901267 -129698516 + (TA)n Simple_repeat Simple_repeat 2 42 0 5 813 226 194 0 0 chr3 29902535 29902571 -129697212 + ID SINE ID 32 67 -157 5 813 450 0 0 0 chr3 29902600 29902650 -129697133 + (CA)n Simple_repeat Simple_repeat 2 51 0 5 813 501 32 0 0 chr3 29904456 29904519 -129695264 + (CA)n Simple_repeat Simple_repeat 2 64 0 5 813 423 0 0 0 chr3 29905710 29905757 -129694026 + (CA)n Simple_repeat Simple_repeat 2 48 0 5 813 185 94 31 0 chr3 29907298 29907330 -129692453 + (TA)n Simple_repeat Simple_repeat 1 33 0 5 813 182 143 0 0 chr3 29907444 29907472 -129692311 + L2b LINE L2 3337 3364 -11 5 813 32 26 0 0 chr3 29911593 29911632 -129688151 + AT_rich Low_complexity Low_complexity 1 39 0 5 813 405 0 0 0 chr3 29912404 29912449 -129687334 + (TG)n Simple_repeat Simple_repeat 1 45 0 5 813 477 0 0 0 chr3 29912449 29912501 -129687282 + (GA)n Simple_repeat Simple_repeat 1 53 0 5 813 26 0 0 0 chr3 29912714 29912740 -129687043 + AT_rich Low_complexity Low_complexity 1 26 0 5 813 369 0 0 0 chr3 29912814 29912855 -129686928 + (CA)n Simple_repeat Simple_repeat 2 42 0 5 813 186 43 0 0 chr3 29913683 29913706 -129686077 + (G)n Simple_repeat Simple_repeat 1 23 0 5 813 22 0 0 0 chr3 29913879 29913901 -129685882 + AT_rich Low_complexity Low_complexity 1 22 0 5 813 327 146 0 0 chr3 29917007 29917062 -129682721 + (GAAAA)n Simple_repeat Simple_repeat 3 57 0 5 813 203 267 152 8 chr3 29918423 29918586 -129681197 + MIRm SINE MIR 18 215 -53 5 813 800 79 8 0 chr3 29918804 29918930 -129680853 + (TC)n Simple_repeat Simple_repeat 2 128 0 5 813 225 65 0 0 chr3 29920345 29920376 -129679407 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 5 813 299 61 41 0 chr3 29921105 29921154 -129678629 + (CAAAAA)n Simple_repeat Simple_repeat 4 54 0 5 813 312 27 0 0 chr3 29922859 29922896 -129676887 + (T)n Simple_repeat Simple_repeat 1 37 0 5 813 39973 72 2 22 chr3 29922937 29930431 -129669352 - L1Md_T LINE L1 0 6582 99 5 813 521 242 127 73 chr3 29930699 29930904 -129668879 - B3 SINE B2 0 216 1 5 813 183 205 0 0 chr3 29930949 29930988 -129668795 + GA-rich Low_complexity Low_complexity 5 43 0 5 813 235 0 0 54 chr3 29931117 29931154 -129668629 + (TTTTG)n Simple_repeat Simple_repeat 4 38 0 5 813 207 0 0 0 chr3 29932055 29932078 -129667705 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 5 813 1380 84 39 17 chr3 29932089 29932270 -129667513 - B2_Mm2 SINE B2 -9 186 2 6 813 288 0 0 0 chr3 29932272 29932304 -129667479 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 6 813 551 284 7 21 chr3 29932490 29932634 -129667149 - ID_B1 SINE B4 -1 223 82 6 813 241 256 10 122 chr3 29932554 29932652 -129667131 - MT2B2 LTR ERVL -346 238 152 6 813 188 254 33 83 chr3 29933021 29933081 -129666702 - L3 LINE CR1 -3547 942 886 6 813 924 168 0 7 chr3 29933519 29933663 -129666120 + B1_Mm SINE Alu 2 144 -3 6 813 252 346 60 8 chr3 29935645 29935779 -129664004 - B1F SINE Alu -8 141 1 6 813 22 0 0 0 chr3 29936458 29936480 -129663303 + AT_rich Low_complexity Low_complexity 1 22 0 6 813 768 249 81 24 chr3 29938278 29938488 -129661295 + ID_B1 SINE B4 3 224 0 6 813 208 139 0 0 chr3 29938874 29938910 -129660873 + (A)n Simple_repeat Simple_repeat 1 36 0 6 813 845 318 95 9 chr3 29939014 29939363 -129660420 + MTEb LTR MaLR 1 379 0 6 813 2004 284 83 26 chr3 29939344 29940669 -129659114 + MTEb-int LTR MaLR 1 1580 0 6 813 1105 291 86 15 chr3 29940669 29941007 -129658776 + MTEb LTR MaLR 1 362 -17 6 813 258 32 0 0 chr3 29941313 29941344 -129658439 + (CATA)n Simple_repeat Simple_repeat 4 34 0 6 813 1112 190 60 5 chr3 29941363 29941564 -129658219 - B3 SINE B2 -4 212 1 6 813 667 277 30 55 chr3 29942559 29942711 -129657072 + B3A SINE B2 1 152 -46 6 813 675 37 0 0 chr3 29942711 29942793 -129656990 + (CA)n Simple_repeat Simple_repeat 1 82 0 6 813 667 277 30 55 chr3 29942793 29942839 -129656944 + B3A SINE B2 153 194 -4 6 813 282 260 55 0 chr3 29944274 29944347 -129655436 + ID4 SINE ID 1 77 -6 6 813 385 222 55 12 chr3 29944366 29944530 -129655253 + (CA)n Simple_repeat Simple_repeat 2 172 0 6 813 338 279 129 50 chr3 29945148 29945427 -129654356 + L1MA6 LINE L1 5947 6247 -53 6 813 246 62 0 0 chr3 29945438 29945470 -129654313 + (CA)n Simple_repeat Simple_repeat 2 33 0 6 813 182 332 82 60 chr3 29947026 29947308 -129652475 + L2 LINE L2 2113 2400 -1019 6 813 236 261 42 28 chr3 29947598 29947669 -129652114 + BC1_Mm scRNA scRNA 2 73 -79 6 813 254 132 19 0 chr3 29947698 29947751 -129652032 + (CA)n Simple_repeat Simple_repeat 2 55 0 6 813 254 164 0 18 chr3 29948154 29948210 -129651573 + (TCTG)n Simple_repeat Simple_repeat 2 56 0 6 813 394 279 48 36 chr3 29949091 29949258 -129650525 - RCHARR1 DNA MER1_type -6 968 800 6 813 1949 112 6 6 chr3 29950831 29951146 -129648637 - Lx LINE L1 0 6654 6340 6 813 407 308 124 0 chr3 29951602 29951787 -129647996 - MER3 DNA MER1_type 0 209 2 6 813 433 271 71 104 chr3 29951880 29952160 -129647623 + B4A SINE B4 1 270 -22 6 813 495 33 0 0 chr3 29952160 29952221 -129647562 + (TG)n Simple_repeat Simple_repeat 2 62 0 6 813 433 271 71 104 chr3 29952221 29952237 -129647546 + B4A SINE B4 271 286 -6 6 813 333 290 0 41 chr3 29953292 29953389 -129646394 + ID_B1 SINE B4 132 224 0 6 813 234 91 0 0 chr3 29956616 29956649 -129643134 + (A)n Simple_repeat Simple_repeat 1 33 0 6 813 565 268 204 5 chr3 29957513 29957704 -129642079 + B4A SINE B4 6 234 -58 6 813 378 0 0 0 chr3 29957716 29957758 -129642025 + (CA)n Simple_repeat Simple_repeat 1 42 0 6 813 3178 86 0 0 chr3 29960860 29961267 -129638516 + MTB_Mm LTR MaLR 1 407 0 6 813 22 0 0 0 chr3 29961544 29961566 -129638217 + AT_rich Low_complexity Low_complexity 1 22 0 6 813 1039 284 103 19 chr3 29961566 29962032 -129637751 - Lx8 LINE L1 -2 7471 6967 6 813 189 0 0 0 chr3 29962136 29962157 -129637626 + (CTTG)n Simple_repeat Simple_repeat 2 22 0 6 813 193 280 87 120 chr3 29962647 29962797 -129636986 + L4 LINE RTE 1088 1232 -797 6 813 520 218 7 13 chr3 29962955 29963104 -129636679 + GA-rich Low_complexity Low_complexity 1 148 0 6 813 309 26 0 0 chr3 29963708 29963746 -129636037 + (TTGG)n Simple_repeat Simple_repeat 2 39 0 6 813 946 143 0 20 chr3 29963746 29963885 -129635898 - B1_Mus1 SINE Alu -8 140 2 6 813 406 264 0 18 chr3 29964094 29964215 -129635568 + B1_Mur3 SINE Alu 2 115 -5 6 813 34 0 0 0 chr3 29966736 29966770 -129633013 + AT_rich Low_complexity Low_complexity 1 34 0 6 813 730 184 11 0 chr3 29967204 29967378 -129632405 + CT-rich Low_complexity Low_complexity 4 179 0 6 813 414 0 0 0 chr3 29968262 29968308 -129631475 + (ATATG)n Simple_repeat Simple_repeat 5 50 0 6 813 240 59 0 0 chr3 29969665 29969699 -129630084 + (CAAAA)n Simple_repeat Simple_repeat 1 34 0 6 813 216 0 0 0 chr3 29970580 29970604 -129629179 + (CA)n Simple_repeat Simple_repeat 2 25 0 6 813 189 107 0 0 chr3 29971394 29971422 -129628361 + (T)n Simple_repeat Simple_repeat 1 28 0 6 813 469 312 196 37 chr3 29973974 29974270 -129625513 - MER2 DNA MER2_type -1 344 2 6 813 26 30 0 0 chr3 29974383 29974416 -129625367 + AT_rich Low_complexity Low_complexity 1 33 0 6 813 213 182 73 0 chr3 29974482 29974537 -129625246 + (TAGA)n Simple_repeat Simple_repeat 2 60 0 6 813 393 22 0 0 chr3 29974586 29974632 -129625151 + (TAGA)n Simple_repeat Simple_repeat 1 46 0 6 813 1183 68 0 0 chr3 29974709 29974855 -129624928 + B1_Mus2 SINE Alu 2 147 0 6 813 444 37 0 0 chr3 29974855 29974909 -129624874 + (GAAA)n Simple_repeat Simple_repeat 3 56 0 6 813 343 313 8 34 chr3 29975167 29975286 -129624497 + MER5B DNA MER1_type 1 116 -62 6 813 193 338 61 24 chr3 29976732 29976814 -129622969 + L2 LINE L2 2998 3082 -337 6 813 587 193 108 47 chr3 29976883 29977138 -129622645 + MTD LTR MaLR 1 420 -1 6 813 1119 81 0 0 chr3 29977560 29977708 -129622075 - B1_Mus1 SINE Alu 0 148 1 6 813 234 0 0 0 chr3 29979573 29979599 -129620184 + (CG)n Simple_repeat Simple_repeat 2 27 0 6 813 297 0 0 0 chr3 29979599 29979631 -129620152 + (CA)n Simple_repeat Simple_repeat 1 33 0 6 813 22 56 0 0 chr3 29980835 29980871 -129618912 + AT_rich Low_complexity Low_complexity 1 36 0 6 813 189 0 0 0 chr3 29981079 29981100 -129618683 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 6 813 583 307 9 122 chr3 29981277 29981596 -129618187 - B4A SINE B4 -8 284 2 6 813 1086 115 0 0 chr3 29983179 29983353 -129616430 + (GA)n Simple_repeat Simple_repeat 1 174 0 6 813 201 180 57 57 chr3 29983742 29983795 -129615988 + L2b LINE L2 3323 3375 0 6 813 296 403 26 26 chr3 29983838 29983991 -129615792 + MIR SINE MIR 19 171 -91 6 813 3242 29 29 0 chr3 29986736 29987119 -129612664 + MTA_Mm LTR MaLR 3 396 0 6 813 31 26 0 0 chr3 29987511 29987549 -129612234 + AT_rich Low_complexity Low_complexity 1 38 0 6 813 414 275 85 60 chr3 29987693 29987894 -129611889 - MER121 Unknown Unknown -197 215 10 6 813 280 275 16 121 chr3 29988094 29988218 -129611565 + ID_B1 SINE B4 114 224 0 6 813 597 282 70 0 chr3 29989185 29989327 -129610456 - RSINE1 SINE B4 -12 153 2 6 813 386 274 0 0 chr3 29989767 29989862 -129609921 - RSINE1 SINE B4 -69 96 2 6 813 669 290 15 15 chr3 29989924 29990120 -129609663 + ID_B1 SINE B4 21 216 -8 6 813 199 194 48 0 chr3 29990131 29990193 -129609590 + GA-rich Low_complexity Low_complexity 2 66 0 6 813 889 141 99 6 chr3 29993334 29993505 -129606278 + B2_Mm2 SINE B2 1 187 -8 6 813 606 286 7 20 chr3 29993827 29993977 -129605806 + RSINE1 SINE B4 2 149 -16 6 813 237 200 67 0 chr3 29993992 29994067 -129605716 + (TAGA)n Simple_repeat Simple_repeat 2 81 0 6 813 214 342 16 57 chr3 29994397 29994521 -129605262 - L2a LINE L2 0 3426 3308 6 813 579 66 0 0 chr3 29995496 29995572 -129604211 + (GGGA)n Simple_repeat Simple_repeat 4 79 0 6 813 510 17 0 0 chr3 29995878 29995937 -129603846 + (CA)n Simple_repeat Simple_repeat 2 60 0 6 813 190 29 88 0 chr3 29997274 29997308 -129602475 + (GAAAA)n Simple_repeat Simple_repeat 2 38 0 6 813 587 317 94 43 chr3 29997527 29997781 -129602002 + B4A SINE B4 6 272 -20 6 813 293 279 0 23 chr3 29997789 29997877 -129601906 + (TA)n Simple_repeat Simple_repeat 1 86 0 6 813 210 309 31 39 chr3 29997955 29998083 -129601700 + GA-rich Low_complexity Low_complexity 4 130 0 6 813 456 252 0 0 chr3 29999002 29999141 -129600642 + (CA)n Simple_repeat Simple_repeat 2 140 0 6 813 483 223 57 19 chr3 29999537 29999642 -129600141 + PB1D10 SINE Alu 9 117 0 6 813 251 293 66 79 chr3 30000764 30000916 -129598867 + L2a LINE L2 3227 3376 -50 1 813 21 57 0 0 chr3 30001732 30001767 -129598016 + AT_rich Low_complexity Low_complexity 1 35 0 2 813 196 102 20 20 chr3 30002766 30002816 -129596967 + (CAAAA)n Simple_repeat Simple_repeat 2 51 0 3 813 252 0 0 0 chr3 30003253 30003281 -129596502 + (TC)n Simple_repeat Simple_repeat 2 29 0 4 813 756 33 0 0 chr3 30005237 30005328 -129594455 + (TTTC)n Simple_repeat Simple_repeat 2 92 0 5 813 216 0 0 0 chr3 30006621 30006645 -129593138 + (A)n Simple_repeat Simple_repeat 1 24 0 6 813 223 96 19 19 chr3 30006669 30006722 -129593061 + (TTTTG)n Simple_repeat Simple_repeat 4 56 0 7 813 561 15 0 0 chr3 30009483 30009549 -129590234 + (TG)n Simple_repeat Simple_repeat 2 67 0 8 813 551 267 6 45 chr3 30010032 30010189 -129589594 + ID_B1 SINE B4 7 157 -67 9 813 279 317 36 24 chr3 30010117 30010201 -129589582 + PB1D9 SINE Alu 5 89 -31 1 813 233 356 52 29 chr3 30010271 30010407 -129589376 + MIR SINE MIR 119 264 -4 1 813 262 286 132 51 chr3 30010812 30011036 -129588747 + MLT1C LTR MaLR 3 241 -149 1 813 234 105 0 0 chr3 30011212 30011250 -129588533 + (TGAA)n Simple_repeat Simple_repeat 1 38 0 1 813 460 313 65 32 chr3 30011314 30011469 -129588314 + RSINE1 SINE B4 6 165 0 1 813 21 0 0 0 chr3 30014264 30014285 -129585498 + AT_rich Low_complexity Low_complexity 1 21 0 1 813 424 300 50 8 chr3 30014573 30014694 -129585089 + RSINE1 SINE B4 4 129 -36 1 813 291 93 0 0 chr3 30014707 30014750 -129585033 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 813 896 200 62 0 chr3 30015141 30015351 -129584432 + MER121 Unknown Unknown 30 252 -160 1 814 22 0 0 0 chr3 30015776 30015798 -129583985 + AT_rich Low_complexity Low_complexity 1 22 0 1 814 243 0 0 0 chr3 30016211 30016238 -129583545 + (T)n Simple_repeat Simple_repeat 1 27 0 2 814 547 306 76 19 chr3 30016634 30016844 -129582939 - B4 SINE B4 -2 290 69 2 814 236 253 26 13 chr3 30016867 30016943 -129582840 - B4 SINE B4 -207 85 9 2 814 246 319 23 70 chr3 30019040 30019168 -129580615 + B4A SINE B4 2 123 -169 2 814 280 261 46 0 chr3 30019277 30019342 -129580441 + RSINE1 SINE B4 76 143 -22 2 814 293 169 12 35 chr3 30019373 30019459 -129580324 + C-rich Low_complexity Low_complexity 1 84 0 2 814 459 221 13 6 chr3 30019463 30019622 -129580161 + CT-rich Low_complexity Low_complexity 1 160 0 2 814 189 250 185 0 chr3 30019755 30019847 -129579936 - MIR SINE MIR -66 142 34 2 814 740 285 26 33 chr3 30020993 30021265 -129578518 + Lx9 LINE L1 7200 7469 -175 2 814 528 45 0 0 chr3 30021265 30021332 -129578451 + (TG)n Simple_repeat Simple_repeat 2 68 0 2 814 304 167 28 0 chr3 30021336 30021408 -129578375 + GA-rich Low_complexity Low_complexity 1 74 0 2 814 232 195 117 0 chr3 30021409 30021486 -129578297 + Lx9 LINE L1 7516 7601 -43 2 814 185 273 0 0 chr3 30022614 30022658 -129577125 + MIR SINE MIR 81 124 -138 3 814 386 336 35 0 chr3 30022914 30023027 -129576756 + PB1D10 SINE Alu 1 117 0 3 814 261 0 0 0 chr3 30023027 30023056 -129576727 + (TG)n Simple_repeat Simple_repeat 2 30 0 3 814 270 355 16 39 chr3 30023056 30023071 -129576712 + B1_Mm SINE Alu 114 126 -21 3 814 309 197 0 0 chr3 30023083 30023149 -129576634 + (TA)n Simple_repeat Simple_repeat 2 67 0 3 814 1067 18 29 29 chr3 30023453 30023628 -129576155 + (TTCTC)n Simple_repeat Simple_repeat 3 177 0 3 814 414 0 0 0 chr3 30023630 30023676 -129576107 + (TCCC)n Simple_repeat Simple_repeat 3 48 0 3 814 480 146 27 0 chr3 30024588 30024681 -129575102 + (TA)n Simple_repeat Simple_repeat 1 96 0 3 814 396 0 0 0 chr3 30024681 30024725 -129575058 + (TG)n Simple_repeat Simple_repeat 1 44 0 3 814 480 146 27 0 chr3 30024725 30024741 -129575042 + (TA)n Simple_repeat Simple_repeat 1 16 0 3 814 443 285 98 31 chr3 30024746 30024909 -129574874 - B3A SINE B2 -16 182 9 4 814 1753 244 24 51 chr3 30024962 30025093 -129574690 + Lx6 LINE L1 7003 7132 -328 4 814 333 47 0 0 chr3 30025093 30025136 -129574647 + (CA)n Simple_repeat Simple_repeat 2 44 0 4 814 1753 244 24 51 chr3 30025136 30025471 -129574312 + Lx6 LINE L1 7133 7456 -4 4 814 197 232 68 51 chr3 30025778 30025837 -129573946 - L4 LINE RTE -297 1732 1673 4 814 1418 204 31 28 chr3 30025880 30026206 -129573577 + ORR1D1 LTR MaLR 2 374 0 4 814 249 33 0 0 chr3 30027161 30027191 -129572592 + (TG)n Simple_repeat Simple_repeat 1 30 0 4 814 387 60 0 0 chr3 30027216 30027266 -129572517 + (CA)n Simple_repeat Simple_repeat 1 50 0 4 814 4166 128 16 3 chr3 30027835 30028447 -129571336 + Lx4A LINE L1 6438 7057 -1 4 814 446 314 59 96 chr3 30028586 30028910 -129570873 + ORR1D2 LTR MaLR 57 368 -2 4 814 195 310 17 0 chr3 30029256 30029314 -129570469 - MIR3 SINE MIR -4 204 146 4 814 1151 62 14 0 chr3 30030982 30031126 -129568657 + B1_Mus2 SINE Alu 2 147 0 5 814 255 323 10 20 chr3 30031819 30031917 -129567866 + GA-rich Low_complexity Low_complexity 3 99 0 5 814 231 348 89 75 chr3 30031918 30032210 -129567573 + MLT1J LTR MaLR 102 397 -115 5 814 435 38 0 0 chr3 30032564 30032617 -129567166 + (GA)n Simple_repeat Simple_repeat 2 54 0 5 814 294 309 9 9 chr3 30032827 30032938 -129566845 + GA-rich Low_complexity Low_complexity 4 114 0 5 814 525 32 0 0 chr3 30035737 30035800 -129563983 + (CA)n Simple_repeat Simple_repeat 2 64 0 5 814 300 174 0 0 chr3 30036263 30036355 -129563428 + (TA)n Simple_repeat Simple_repeat 2 93 0 5 814 423 0 0 0 chr3 30036358 30036405 -129563378 + (TTA)n Simple_repeat Simple_repeat 1 47 0 5 814 922 182 137 38 chr3 30036466 30036771 -129563012 + MT2A LTR ERVL 1 461 -140 5 814 681 238 78 12 chr3 30038402 30038568 -129561215 + B3 SINE B2 40 216 0 5 814 229 262 16 16 chr3 30040269 30040282 -129559501 + MER3 DNA MER1_type 35 47 -162 6 814 230 270 16 0 chr3 30040282 30040345 -129559438 - MER3 DNA MER1_type 0 209 146 6 814 335 127 0 16 chr3 30040706 30040770 -129559013 + (TC)n Simple_repeat Simple_repeat 1 63 0 6 814 214 258 0 31 chr3 30040770 30040834 -129558949 + (TATATG)n Simple_repeat Simple_repeat 2 63 0 6 814 230 222 0 0 chr3 30040771 30040816 -129558967 + (TG)n Simple_repeat Simple_repeat 2 46 0 6 814 1095 245 41 4 chr3 30040967 30041237 -129558546 + B4A SINE B4 1 280 -12 6 814 294 341 51 0 chr3 30042038 30042176 -129557607 + B1F1 SINE Alu 4 148 -1 6 814 183 42 0 0 chr3 30043772 30043796 -129555987 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 6 814 540 0 0 0 chr3 30044929 30044989 -129554794 + (TTTTG)n Simple_repeat Simple_repeat 2 61 0 6 814 414 0 0 0 chr3 30045563 30045609 -129554174 + (CA)n Simple_repeat Simple_repeat 1 46 0 6 814 273 295 93 21 chr3 30046259 30046356 -129553427 + MER5A1 DNA MER1_type 34 137 -29 7 814 191 88 0 29 chr3 30047224 30047259 -129552524 + (TAA)n Simple_repeat Simple_repeat 1 34 0 7 814 350 314 0 9 chr3 30048427 30048533 -129551250 + PB1D10 SINE Alu 3 107 -10 7 814 324 0 0 0 chr3 30051741 30051777 -129548006 + (CA)n Simple_repeat Simple_repeat 1 36 0 7 814 501 17 0 0 chr3 30052243 30052301 -129547482 + (TG)n Simple_repeat Simple_repeat 2 59 0 7 814 222 91 0 0 chr3 30053621 30053654 -129546129 + (TAAAAA)n Simple_repeat Simple_repeat 3 35 0 7 814 1624 83 0 17 chr3 30053930 30054163 -129545620 + L1Md_F2 LINE L1 6352 6580 -2 7 814 423 214 15 8 chr3 30054439 30054571 -129545212 + CT-rich Low_complexity Low_complexity 1 133 0 7 814 974 258 20 16 chr3 30054571 30054815 -129544968 - B4A SINE B4 -46 246 2 7 814 769 245 9 71 chr3 30055365 30055532 -129544251 + B3A SINE B2 1 165 -33 7 814 384 22 0 0 chr3 30055532 30055577 -129544206 + (CA)n Simple_repeat Simple_repeat 1 45 0 8 814 769 245 9 71 chr3 30055577 30055620 -129544163 + B3A SINE B2 166 198 0 7 814 445 193 25 0 chr3 30057951 30058070 -129541713 + CT-rich Low_complexity Low_complexity 6 127 0 8 814 651 268 74 53 chr3 30058320 30058604 -129541179 + B4A SINE B4 3 292 0 8 814 303 104 0 0 chr3 30058615 30058663 -129541120 + (CA)n Simple_repeat Simple_repeat 1 48 0 8 814 2360 273 37 103 chr3 30061084 30061687 -129538096 + RCHARR1 DNA MER1_type 48 659 -315 8 814 666 307 11 0 chr3 30061687 30061866 -129537917 + B3A SINE B2 2 182 -16 8 814 2360 273 37 103 chr3 30061866 30061916 -129537867 + RCHARR1 DNA MER1_type 660 660 -314 8 814 252 0 0 0 chr3 30061916 30061944 -129537839 + (TC)n Simple_repeat Simple_repeat 1 28 0 8 814 180 77 0 0 chr3 30061944 30061969 -129537814 + (CA)n Simple_repeat Simple_repeat 1 26 0 8 814 2360 273 37 103 chr3 30061969 30062302 -129537481 + RCHARR1 DNA MER1_type 660 970 -4 8 814 651 184 19 12 chr3 30062926 30063086 -129536697 + GA-rich Low_complexity Low_complexity 1 161 0 8 814 609 269 224 22 chr3 30064969 30065201 -129534582 + B4A SINE B4 2 280 -12 8 814 423 0 0 0 chr3 30065201 30065248 -129534535 + (CA)n Simple_repeat Simple_repeat 2 48 0 9 814 416 320 70 47 chr3 30065903 30066244 -129533539 - L3 LINE CR1 -303 4186 3838 9 814 240 35 0 0 chr3 30067336 30067365 -129532418 + (GA)n Simple_repeat Simple_repeat 1 29 0 9 814 476 298 24 0 chr3 30068611 30068735 -129531048 - RSINE1 SINE B4 -10 155 29 9 814 10974 13 0 1 chr3 30069246 30071192 -129528591 - L1Md_T LINE L1 0 6582 4638 9 814 538 250 142 15 chr3 30071587 30071721 -129528062 + B3A SINE B2 1 151 -47 9 814 290 232 17 26 chr3 30072609 30072724 -129527059 + (CAGAGA)n Simple_repeat Simple_repeat 6 119 0 9 814 231 279 68 68 chr3 30073467 30073540 -129526243 + ID4_ SINE ID 1 73 -10 9 814 612 304 135 51 chr3 30077613 30078087 -129521696 - L2 LINE L2 -436 2983 2470 9 814 198 0 0 0 chr3 30078105 30078127 -129521656 + (TG)n Simple_repeat Simple_repeat 1 22 0 9 814 340 373 68 12 chr3 30078277 30078440 -129521343 - B4 SINE B4 -89 203 32 1 814 382 253 66 0 chr3 30078484 30078575 -129521208 + B1_Mur2 SINE Alu 7 103 -46 1 814 348 83 0 0 chr3 30078597 30078645 -129521138 + (CA)n Simple_repeat Simple_repeat 2 49 0 1 814 320 111 0 18 chr3 30078662 30078717 -129521066 + (TGAA)n Simple_repeat Simple_repeat 4 57 0 1 814 598 301 128 50 chr3 30078771 30079131 -129520652 - L2 LINE L2 -1056 2363 1976 9 814 246 350 36 14 chr3 30079253 30079392 -129520391 + B1F1 SINE Alu 1 142 -7 1 814 374 328 0 97 chr3 30079414 30079559 -129520224 - B1F1 SINE Alu -17 132 2 1 814 354 138 0 0 chr3 30080343 30080401 -129519382 + (GGA)n Simple_repeat Simple_repeat 3 60 0 1 814 1029 152 0 7 chr3 30081464 30081610 -129518173 + B1_Mur3 SINE Alu 3 147 -2 1 814 315 0 0 0 chr3 30081953 30081988 -129517795 + (CA)n Simple_repeat Simple_repeat 1 35 0 1 814 941 168 6 0 chr3 30082828 30083007 -129516776 + GA-rich Low_complexity Low_complexity 1 180 0 1 814 216 0 0 0 chr3 30083007 30083031 -129516752 + (GGGA)n Simple_repeat Simple_repeat 1 24 0 1 814 186 103 0 0 chr3 30083357 30083386 -129516397 + (TCTCCC)n Simple_repeat Simple_repeat 4 32 0 1 814 573 303 108 65 chr3 30083416 30083695 -129516088 - B4 SINE B4 0 292 2 1 814 228 282 14 0 chr3 30084104 30084175 -129515608 - BLACKJACK DNA AcHobo 0 2944 2873 1 814 268 327 0 25 chr3 30084236 30084564 -129515219 + (CAAG)n Simple_repeat Simple_repeat 1 319 0 1 814 307 200 14 54 chr3 30085678 30085752 -129514031 - ID4_ SINE ID -10 73 3 1 814 972 71 0 0 chr3 30087668 30087795 -129511988 + B1_Mm SINE Alu 21 147 0 1 814 202 147 51 39 chr3 30088673 30088751 -129511032 + (TATG)n Simple_repeat Simple_repeat 4 82 0 1 814 499 202 36 0 chr3 30088798 30088966 -129510817 + (TATG)n Simple_repeat Simple_repeat 1 174 0 1 814 489 193 11 59 chr3 30088983 30089170 -129510613 + (TATG)n Simple_repeat Simple_repeat 3 180 0 1 814 254 239 15 15 chr3 30089171 30089239 -129510544 + (TATATG)n Simple_repeat Simple_repeat 6 73 0 1 814 357 301 126 52 chr3 30089240 30089510 -129510273 - B4A SINE B4 0 292 3 1 814 578 42 0 0 chr3 30092209 30092281 -129507502 - L1_Mm LINE L1 -1273 4610 4539 1 814 1024 144 196 5 chr3 30093668 30093857 -129505926 + URR1B DNA MER1_type 1 225 0 1 814 2274 130 16 3 chr3 30094159 30094482 -129505301 + ORR1A4 LTR MaLR 3 329 0 1 814 591 260 8 38 chr3 30095291 30095423 -129504360 + ID_B1 SINE B4 77 204 -20 1 814 458 271 38 106 chr3 30095742 30095874 -129503909 + RSINE1 SINE B4 41 163 -2 1 814 698 253 24 12 chr3 30096005 30096173 -129503610 + B3 SINE B2 47 216 0 1 814 252 86 0 0 chr3 30096315 30096350 -129503433 + (TATATG)n Simple_repeat Simple_repeat 2 36 0 1 814 215 288 67 0 chr3 30096720 30096845 -129502938 + MIR SINE MIR 74 205 -57 1 814 30 45 0 0 chr3 30097416 30097460 -129502323 + AT_rich Low_complexity Low_complexity 1 44 0 1 814 324 230 80 126 chr3 30098128 30098324 -129501459 + B1F SINE Alu 1 149 0 1 814 406 221 24 24 chr3 30099124 30099291 -129500492 + (TATG)n Simple_repeat Simple_repeat 1 167 0 1 814 407 285 78 90 chr3 30099311 30099395 -129500388 - RSINE1 SINE B4 0 165 77 1 814 324 0 0 0 chr3 30099395 30099431 -129500352 + (TG)n Simple_repeat Simple_repeat 1 36 0 1 814 407 285 78 90 chr3 30099431 30099512 -129500271 - RSINE1 SINE B4 -89 76 3 1 814 332 155 0 14 chr3 30099785 30099857 -129499926 + CT-rich Low_complexity Low_complexity 3 73 0 1 814 182 339 101 59 chr3 30100244 30100363 -129499420 - MER5B DNA MER1_type -52 126 3 1 814 816 261 25 15 chr3 30100729 30100931 -129498852 - B3 SINE B2 -7 209 6 1 814 516 243 74 42 chr3 30102082 30102271 -129497512 - B3A SINE B2 -2 196 2 1 814 641 228 66 20 chr3 30103878 30104030 -129495753 + RSINE1 SINE B4 2 160 -5 1 814 21 36 0 0 chr3 30104049 30104077 -129495706 + AT_rich Low_complexity Low_complexity 1 28 0 1 814 234 254 50 17 chr3 30104077 30104137 -129495646 + MER5A1 DNA MER1_type 63 124 -42 1 814 192 40 0 0 chr3 30104192 30104217 -129495566 + (GAGTG)n Simple_repeat Simple_repeat 4 28 0 1 814 25 31 0 0 chr3 30107558 30107590 -129492193 + AT_rich Low_complexity Low_complexity 1 32 0 1 814 1004 223 40 0 chr3 30108132 30108334 -129491449 + B3 SINE B2 7 216 0 1 814 24 0 0 0 chr3 30108341 30108365 -129491418 + AT_rich Low_complexity Low_complexity 1 24 0 1 814 414 286 61 53 chr3 30110459 30110706 -129489077 + L1MC4a LINE L1 5692 5940 -1942 1 814 282 56 0 0 chr3 30111672 30111708 -129488075 + (TG)n Simple_repeat Simple_repeat 2 37 0 1 814 289 232 174 0 chr3 30114031 30114100 -129485683 - RSINE1 SINE B4 -74 91 11 1 814 452 18 18 0 chr3 30114261 30114318 -129485465 + (TG)n Simple_repeat Simple_repeat 1 58 0 1 814 21 0 0 0 chr3 30114663 30114684 -129485099 + AT_rich Low_complexity Low_complexity 1 21 0 1 814 252 0 0 0 chr3 30114939 30114967 -129484816 + (TG)n Simple_repeat Simple_repeat 1 28 0 1 814 22 70 0 0 chr3 30116527 30116570 -129483213 + AT_rich Low_complexity Low_complexity 1 43 0 1 814 243 0 0 0 chr3 30119352 30119379 -129480404 + (A)n Simple_repeat Simple_repeat 1 27 0 1 814 471 78 0 0 chr3 30122081 30122145 -129477638 + (CA)n Simple_repeat Simple_repeat 2 65 0 1 814 1212 76 0 0 chr3 30124104 30124249 -129475534 + B1_Mus1 SINE Alu 1 145 -3 1 814 772 118 7 7 chr3 30124412 30124549 -129475234 + (TTTC)n Simple_repeat Simple_repeat 4 140 0 1 814 525 299 12 82 chr3 30124549 30124742 -129475041 - B4 SINE B4 -46 246 56 1 814 333 0 0 0 chr3 30124795 30124832 -129474951 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 814 247 297 121 48 chr3 30125800 30125924 -129473859 - MIRc SINE MIR -128 140 8 1 814 22 0 0 0 chr3 30126120 30126142 -129473641 + GC_rich Low_complexity Low_complexity 1 22 0 1 814 180 0 0 0 chr3 30126347 30126367 -129473416 + (TTC)n Simple_repeat Simple_repeat 3 22 0 1 814 796 249 42 5 chr3 30130438 30130628 -129469155 - B3A SINE B2 -1 197 1 1 814 873 204 107 5 chr3 30130849 30131036 -129468747 + B3 SINE B2 5 210 -6 1 814 351 237 174 23 chr3 30131172 30131272 -129468511 - B1_Mur2 SINE Alu -10 139 36 1 814 240 111 0 0 chr3 30131765 30131801 -129467982 + (TA)n Simple_repeat Simple_repeat 2 37 0 1 814 383 0 21 0 chr3 30131979 30132026 -129467757 + (TC)n Simple_repeat Simple_repeat 2 49 0 1 814 378 213 0 0 chr3 30132027 30132121 -129467662 + (TATG)n Simple_repeat Simple_repeat 1 94 0 1 814 184 277 43 58 chr3 30133548 30133617 -129466166 - MIRc SINE MIR -168 100 33 1 814 649 286 6 19 chr3 30134679 30134836 -129464947 + RSINE1 SINE B4 5 159 -6 1 814 247 317 131 28 chr3 30135952 30136059 -129463724 + PB1 SINE Alu 1 118 -9 1 814 23 54 0 0 chr3 30136297 30136334 -129463449 + AT_rich Low_complexity Low_complexity 1 37 0 1 814 849 252 38 30 chr3 30137893 30138105 -129461678 + B3 SINE B2 2 212 -4 1 814 275 293 24 87 chr3 30140095 30140222 -129459561 + PB1D7 SINE Alu 1 119 -1 1 814 315 0 0 0 chr3 30140738 30140773 -129459010 + (TA)n Simple_repeat Simple_repeat 1 35 0 1 814 252 0 0 0 chr3 30140773 30140800 -129458983 + (GA)n Simple_repeat Simple_repeat 2 29 0 1 814 205 161 0 0 chr3 30140805 30140836 -129458947 + (CATA)n Simple_repeat Simple_repeat 2 32 0 1 814 351 0 0 0 chr3 30143244 30143283 -129456500 + (TG)n Simple_repeat Simple_repeat 1 39 0 1 814 183 42 0 0 chr3 30146496 30146520 -129453263 + (T)n Simple_repeat Simple_repeat 1 24 0 1 815 438 154 0 0 chr3 30146897 30146975 -129452808 + (TG)n Simple_repeat Simple_repeat 1 78 0 1 815 698 313 61 22 chr3 30148057 30148335 -129451448 + MER2 DNA MER2_type 4 292 -53 1 815 207 0 0 0 chr3 30149105 30149128 -129450655 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 1 815 1050 106 7 0 chr3 30149150 30149291 -129450492 - B1_Mus1 SINE Alu -5 143 2 1 815 308 330 42 0 chr3 30151421 30151539 -129448244 + L2a LINE L2 3304 3426 0 1 815 521 253 206 11 chr3 30151657 30151837 -129447946 + ID_B1 SINE B4 1 215 -9 1 815 600 145 21 0 chr3 30151851 30151996 -129447787 + CT-rich Low_complexity Low_complexity 1 148 0 1 815 660 255 48 76 chr3 30152186 30152553 -129447230 + MER33 DNA MER1_type 5 324 0 1 815 225 212 57 34 chr3 30154630 30154718 -129445065 - Lx8 LINE L1 -31 7442 7353 1 815 23 0 0 0 chr3 30154723 30154746 -129445037 + AT_rich Low_complexity Low_complexity 1 23 0 1 815 1049 246 103 73 chr3 30154826 30155251 -129444532 - Lx7 LINE L1 -361 7335 6898 1 815 667 273 67 57 chr3 30155937 30156147 -129443636 - B4A SINE B4 -79 213 2 1 815 213 39 0 0 chr3 30156977 30157003 -129442780 + (TA)n Simple_repeat Simple_repeat 2 27 0 1 815 27 0 0 0 chr3 30158207 30158234 -129441549 + AT_rich Low_complexity Low_complexity 1 27 0 1 815 268 227 0 15 chr3 30160604 30160671 -129439112 + (CA)n Simple_repeat Simple_repeat 2 67 0 1 815 391 303 60 15 chr3 30161550 30161684 -129438099 + MIR3 SINE MIR 64 203 -5 1 815 225 0 0 0 chr3 30162579 30162604 -129437179 + (CA)n Simple_repeat Simple_repeat 2 26 0 1 815 649 298 93 54 chr3 30163513 30163793 -129435990 + B4A SINE B4 2 292 0 1 815 499 57 73 16 chr3 30164664 30164788 -129434995 + (TA)n Simple_repeat Simple_repeat 1 131 0 1 815 651 255 66 20 chr3 30164789 30164941 -129434842 - B3A SINE B2 -38 160 2 1 815 645 282 93 62 chr3 30164941 30165524 -129434259 + L1M2 LINE L1 4601 5201 -942 1 815 597 315 39 22 chr3 30165572 30165754 -129434029 + B3 SINE B2 1 185 -31 1 815 480 62 0 0 chr3 30165754 30165818 -129433965 + (TG)n Simple_repeat Simple_repeat 2 65 0 1 815 22 0 0 0 chr3 30167661 30167683 -129432100 + AT_rich Low_complexity Low_complexity 1 22 0 2 815 315 0 0 0 chr3 30167718 30167753 -129432030 + (CA)n Simple_repeat Simple_repeat 2 36 0 2 815 480 250 6 69 chr3 30168285 30168444 -129431339 + B3A SINE B2 49 197 -1 2 815 685 362 59 32 chr3 30169878 30170503 -129429280 + Lx8 LINE L1 6830 7471 -2 2 815 590 273 103 0 chr3 30171637 30171701 -129428082 + ID SINE ID 2 82 -142 2 815 293 310 24 81 chr3 30171701 30171824 -129427959 + B1_Mus2 SINE Alu 1 116 -31 2 815 364 307 33 0 chr3 30171939 30172089 -129427694 - MER5A1 DNA MER1_type -3 163 9 2 815 625 306 77 43 chr3 30172387 30172643 -129427140 + B4A SINE B4 6 292 0 2 815 2248 241 106 20 chr3 30174696 30175433 -129424350 - RCHARR1 DNA MER1_type -172 802 3 2 815 288 130 0 0 chr3 30175578 30175624 -129424159 + (ATGGTG)n Simple_repeat Simple_repeat 2 47 0 2 815 342 314 86 0 chr3 30175632 30175772 -129424011 + RSINE1 SINE B4 4 155 -10 2 815 317 136 15 0 chr3 30175794 30175860 -129423923 + (TGAA)n Simple_repeat Simple_repeat 3 69 0 2 815 429 20 0 0 chr3 30175998 30176048 -129423735 + (GA)n Simple_repeat Simple_repeat 2 51 0 2 815 225 94 0 0 chr3 30177139 30177171 -129422612 + (TGGA)n Simple_repeat Simple_repeat 4 35 0 2 815 335 277 32 0 chr3 30177954 30178048 -129421735 + PB1D10 SINE Alu 1 97 -20 2 815 480 282 45 131 chr3 30178075 30178248 -129421535 + MLT1B LTR MaLR 164 319 -71 2 815 708 281 26 10 chr3 30178248 30178442 -129421341 - B3A SINE B2 -1 197 1 2 815 480 282 45 131 chr3 30178442 30178513 -129421270 + MLT1B LTR MaLR 320 387 -3 2 815 207 184 163 0 chr3 30178770 30178819 -129420964 - L2c LINE L2 -50 3337 3281 2 815 305 143 0 31 chr3 30179072 30179137 -129420646 - B1F SINE Alu 0 149 87 2 815 272 188 0 45 chr3 30179077 30179144 -129420639 - ID_B1 SINE B4 -3 221 158 2 815 387 184 27 18 chr3 30179145 30179256 -129420527 + G-rich Low_complexity Low_complexity 3 114 0 2 815 400 159 0 0 chr3 30179256 30179319 -129420464 - PB1D9 SINE Alu -56 64 2 2 815 217 375 0 0 chr3 30179546 30179642 -129420141 + L2a LINE L2 3328 3423 -3 2 815 278 245 0 101 chr3 30179963 30180072 -129419711 + L1MA4 LINE L1 5710 5807 -490 2 815 269 287 35 9 chr3 30180072 30180188 -129419595 + (TATATG)n Simple_repeat Simple_repeat 6 124 0 2 815 350 292 7 21 chr3 30180195 30180335 -129419448 + L1MA4 LINE L1 5792 5929 -371 2 815 723 104 0 0 chr3 30180527 30180633 -129419150 + (TA)n Simple_repeat Simple_repeat 2 107 0 2 815 333 100 0 0 chr3 30180715 30180765 -129419018 + (CA)n Simple_repeat Simple_repeat 1 50 0 2 815 563 258 166 24 chr3 30181099 30181389 -129418394 - ORSL-2a DNA Tip100 -3 339 9 2 815 288 170 0 0 chr3 30183379 30183432 -129416351 + A-rich Low_complexity Low_complexity 1 53 0 2 815 336 274 117 114 chr3 30184047 30184389 -129415394 + Lx9 LINE L1 7292 7634 -10 2 815 23 0 0 0 chr3 30186009 30186032 -129413751 + AT_rich Low_complexity Low_complexity 1 23 0 2 815 333 0 0 0 chr3 30186605 30186642 -129413141 + (CA)n Simple_repeat Simple_repeat 2 38 0 2 815 537 16 0 0 chr3 30186642 30186703 -129413080 + (TA)n Simple_repeat Simple_repeat 2 63 0 2 815 287 206 127 0 chr3 30187008 30187071 -129412712 + ID4_ SINE ID 7 77 -6 2 815 555 274 0 0 chr3 30187071 30187394 -129412389 + (CA)n Simple_repeat Simple_repeat 1 323 0 2 815 416 279 17 43 chr3 30189291 30189523 -129410260 + L1M5 LINE L1 5083 5308 -838 2 815 608 135 9 0 chr3 30189803 30189914 -129409869 + (TC)n Simple_repeat Simple_repeat 1 112 0 2 815 278 267 27 0 chr3 30190344 30190419 -129409364 + L1M5 LINE L1 5747 5823 -350 2 815 315 19 58 0 chr3 30191776 30191828 -129407955 + (TTTTG)n Simple_repeat Simple_repeat 1 55 0 2 815 1715 106 115 41 chr3 30191829 30192143 -129407640 - Lx2 LINE L1 -4 6993 6657 2 815 324 0 0 0 chr3 30195830 30195866 -129403917 + (CA)n Simple_repeat Simple_repeat 2 37 0 2 815 351 0 0 0 chr3 30195991 30196030 -129403753 + (TC)n Simple_repeat Simple_repeat 1 39 0 2 815 458 141 0 27 chr3 30196030 30196176 -129403607 + (CA)n Simple_repeat Simple_repeat 2 143 0 2 815 189 0 0 0 chr3 30196327 30196348 -129403435 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 2 815 499 96 12 12 chr3 30196866 30196950 -129402833 + (TA)n Simple_repeat Simple_repeat 2 85 0 2 815 1145 78 0 0 chr3 30197547 30197689 -129402094 + B1_Mus2 SINE Alu 1 142 -5 2 815 479 78 0 13 chr3 30197689 30197767 -129402016 + (TAAA)n Simple_repeat Simple_repeat 4 80 0 2 815 307 282 13 0 chr3 30197777 30197855 -129401928 + RSINE1 SINE B4 2 80 -85 2 815 194 0 39 0 chr3 30197856 30197882 -129401901 + (GA)n Simple_repeat Simple_repeat 2 28 0 2 815 231 36 0 0 chr3 30197930 30197958 -129401825 + (CA)n Simple_repeat Simple_repeat 2 29 0 2 815 28 29 0 0 chr3 30198020 30198055 -129401728 + AT_rich Low_complexity Low_complexity 1 35 0 2 815 696 210 0 0 chr3 30201480 30201647 -129398136 + (TA)n Simple_repeat Simple_repeat 1 167 0 2 815 336 300 0 12 chr3 30204575 30204656 -129395127 + ID SINE ID 3 82 -142 2 815 28 0 0 0 chr3 30204716 30204744 -129395039 + AT_rich Low_complexity Low_complexity 1 28 0 2 815 285 280 0 13 chr3 30206456 30206532 -129393251 - B4 SINE B4 -216 76 2 2 815 776 244 18 0 chr3 30207492 30207660 -129392123 + ID_B1 SINE B4 53 223 -1 2 815 387 0 0 0 chr3 30207936 30207979 -129391804 + (TG)n Simple_repeat Simple_repeat 2 44 0 2 815 618 39 0 0 chr3 30208206 30208283 -129391500 + (TG)n Simple_repeat Simple_repeat 1 77 0 2 815 425 278 95 0 chr3 30210080 30210206 -129389577 - RSINE1 SINE B4 -24 141 4 2 815 236 147 53 0 chr3 30210284 30210359 -129389424 + CT-rich Low_complexity Low_complexity 2 80 0 2 815 667 264 66 40 chr3 30210433 30210705 -129389078 - B4A SINE B4 -8 284 6 2 815 611 270 90 0 chr3 30210725 30210903 -129388880 - ID_B1 SINE B4 -22 202 9 2 815 323 303 54 29 chr3 30211364 30211605 -129388178 + L1MA6 LINE L1 6023 6269 -31 2 815 822 254 46 9 chr3 30211768 30212026 -129387757 + MIR SINE MIR 1 267 -1 2 815 428 289 12 66 chr3 30212605 30212772 -129387011 - ID_B1 SINE B4 0 224 67 2 815 485 347 0 0 chr3 30214878 30215051 -129384732 + (TGG)n Simple_repeat Simple_repeat 1 173 0 2 815 279 140 0 0 chr3 30215085 30215135 -129384648 + (TGG)n Simple_repeat Simple_repeat 2 51 0 2 815 678 216 66 111 chr3 30216887 30217052 -129382731 + B3A SINE B2 3 161 -34 2 815 339 25 0 0 chr3 30217052 30217092 -129382691 + (CA)n Simple_repeat Simple_repeat 2 41 0 2 815 427 216 66 111 chr3 30217092 30217124 -129382659 + B2_Mm2 SINE B2 162 191 -4 2 815 618 14 0 0 chr3 30217435 30217506 -129382277 + (GA)n Simple_repeat Simple_repeat 2 72 0 2 815 797 226 19 78 chr3 30218125 30218331 -129381452 + B3A SINE B2 5 198 0 2 815 210 105 0 0 chr3 30218395 30218433 -129381350 + (T)n Simple_repeat Simple_repeat 1 38 0 2 815 566 254 31 77 chr3 30218989 30219185 -129380598 - ID_B1 SINE B4 -31 193 7 2 815 270 0 0 0 chr3 30220140 30220170 -129379613 + (CAAA)n Simple_repeat Simple_repeat 3 32 0 2 815 420 67 0 0 chr3 30221415 30221475 -129378308 + (TC)n Simple_repeat Simple_repeat 1 60 0 2 815 474 27 53 0 chr3 30223012 30223087 -129376696 + (CAAAA)n Simple_repeat Simple_repeat 2 80 0 2 815 282 287 109 99 chr3 30223708 30223909 -129375874 - B4 SINE B4 -38 254 52 2 815 190 75 24 48 chr3 30224421 30224463 -129375320 + (TTTTG)n Simple_repeat Simple_repeat 2 42 0 2 815 203 156 0 0 chr3 30225086 30225118 -129374665 + T-rich Low_complexity Low_complexity 5 36 0 2 815 558 0 0 0 chr3 30225277 30225339 -129374444 + (CA)n Simple_repeat Simple_repeat 1 62 0 2 815 201 94 0 0 chr3 30226237 30226269 -129373514 + (CAAAC)n Simple_repeat Simple_repeat 3 34 0 2 815 320 275 8 32 chr3 30226912 30227036 -129372747 + GA-rich Low_complexity Low_complexity 3 123 0 2 815 352 319 156 58 chr3 30228091 30228264 -129371519 - B3A SINE B2 -8 190 1 2 815 248 341 16 23 chr3 30229607 30229736 -129370047 + L1MEe LINE L1 191 318 -4536 2 815 405 284 8 8 chr3 30230050 30230167 -129369616 + B3A SINE B2 1 117 -81 2 815 239 235 0 0 chr3 30230256 30230307 -129369476 + PB1 SINE Alu 57 107 -20 2 815 924 167 0 0 chr3 30230523 30230691 -129369092 + (TA)n Simple_repeat Simple_repeat 1 168 0 2 815 189 0 0 0 chr3 30231915 30231936 -129367847 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 2 815 1222 35 0 0 chr3 30231940 30232081 -129367702 - B1_Mm SINE Alu -6 141 1 2 815 368 241 35 42 chr3 30234786 30234901 -129364882 + B4A SINE B4 1 121 -44 2 815 571 255 48 16 chr3 30235429 30235616 -129364167 - L3b LINE CR1 -287 195 3 2 815 382 348 5 113 chr3 30235989 30236174 -129363609 - RSINE1 SINE B4 0 165 1 2 815 1287 155 14 9 chr3 30236250 30236471 -129363312 + URR1B DNA MER1_type 1 222 -3 2 815 1196 282 13 3 chr3 30236518 30236817 -129362966 + MTE2b LTR MaLR 3 304 -75 2 815 350 337 0 0 chr3 30236904 30236993 -129362790 + 5S rRNA rRNA 2 90 -31 2 815 23 0 0 0 chr3 30239256 30239279 -129360504 + AT_rich Low_complexity Low_complexity 1 23 0 2 815 279 0 0 0 chr3 30239362 30239393 -129360390 + (CAGA)n Simple_repeat Simple_repeat 4 34 0 2 815 2498 225 82 10 chr3 30239730 30240327 -129359456 + Lx6 LINE L1 6795 7434 -26 2 815 35 41 0 0 chr3 30240403 30240452 -129359331 + AT_rich Low_complexity Low_complexity 1 49 0 2 815 531 325 99 8 chr3 30240520 30240762 -129359021 + B4A SINE B4 21 284 -8 2 815 22 0 0 0 chr3 30241534 30241556 -129358227 + AT_rich Low_complexity Low_complexity 1 22 0 2 815 206 302 0 45 chr3 30242225 30242336 -129357447 + GA-rich Low_complexity Low_complexity 2 107 0 2 815 482 302 0 0 chr3 30242338 30242457 -129357326 + RSINE1 SINE B4 4 122 -43 2 815 402 21 0 0 chr3 30242483 30242530 -129357253 + (CA)n Simple_repeat Simple_repeat 2 48 0 3 815 540 0 0 0 chr3 30242541 30242601 -129357182 + (GA)n Simple_repeat Simple_repeat 1 60 0 3 815 218 303 0 15 chr3 30242608 30242675 -129357108 + A-rich Low_complexity Low_complexity 5 70 0 3 815 292 246 102 34 chr3 30243587 30243705 -129356078 + MLT1N2 LTR MaLR 429 554 -8 3 815 382 259 35 62 chr3 30243999 30244143 -129355640 - B1F1 SINE Alu 0 149 10 3 815 795 21 0 0 chr3 30244257 30244350 -129355433 + (TG)n Simple_repeat Simple_repeat 2 94 0 3 815 578 275 39 128 chr3 30244350 30244554 -129355229 - B3 SINE B2 -30 186 1 3 815 2070 105 18 12 chr3 30244966 30245293 -129354490 + Lx LINE L1 6326 6654 0 3 815 231 0 77 0 chr3 30245451 30245490 -129354293 + (CAAAAA)n Simple_repeat Simple_repeat 2 43 0 3 815 291 339 86 47 chr3 30247244 30247476 -129352307 + ORR1E LTR MaLR 67 307 -52 3 815 430 289 12 25 chr3 30247547 30247710 -129352073 - L1MA9 LINE L1 0 6312 6152 3 815 378 178 35 35 chr3 30247745 30247914 -129351869 + (TATATG)n Simple_repeat Simple_repeat 2 170 0 3 815 386 153 45 40 chr3 30247915 30248092 -129351691 + (TG)n Simple_repeat Simple_repeat 2 179 0 3 815 226 214 0 0 chr3 30248866 30248908 -129350875 + CT-rich Low_complexity Low_complexity 4 45 0 3 815 438 20 0 0 chr3 30249073 30249124 -129350659 + (CA)n Simple_repeat Simple_repeat 2 52 0 3 815 834 244 79 0 chr3 30250627 30250862 -129348921 + MTEa LTR MaLR 1 261 -118 3 815 396 292 19 65 chr3 30250984 30251138 -129348645 + MTEa LTR MaLR 231 377 -2 3 815 348 324 9 0 chr3 30251626 30251709 -129348074 + B3A SINE B2 74 157 -41 3 815 297 89 0 0 chr3 30251709 30251754 -129348029 + (CAGA)n Simple_repeat Simple_repeat 4 48 0 3 815 348 324 9 0 chr3 30251754 30251778 -129348005 + B3A SINE B2 158 181 -17 3 815 203 229 0 0 chr3 30251778 30251813 -129347970 + (CG)n Simple_repeat Simple_repeat 2 36 0 3 815 333 45 0 22 chr3 30251813 30251859 -129347924 + HAL1-3A_ME LINE L1 1976 2020 -838 3 815 1001 283 54 70 chr3 30252016 30252493 -129347290 - L1MB3 LINE L1 -2 6181 5706 3 815 435 19 0 0 chr3 30253772 30253824 -129345959 + (TG)n Simple_repeat Simple_repeat 1 52 0 3 815 468 294 58 43 chr3 30253832 30254020 -129345763 - B4 SINE B4 -14 278 88 3 815 8905 10 3 0 chr3 30255045 30256241 -129343542 - L1Md_A LINE L1 -2 6580 5379 3 815 484 179 21 0 chr3 30256241 30256336 -129343447 - URR1A DNA MER1_type -85 141 45 3 815 468 232 54 117 chr3 30256715 30256954 -129342829 + B4 SINE B4 2 225 -67 3 815 291 247 100 11 chr3 30257016 30257106 -129342677 - PB1D9 SINE Alu -20 100 3 3 815 861 239 19 137 chr3 30257111 30257373 -129342410 - Lx8 LINE L1 -457 7016 6786 3 815 350 312 118 11 chr3 30257363 30257541 -129342242 + Lx8 LINE L1 7037 7233 -240 3 815 225 304 0 0 chr3 30257727 30257796 -129341987 + (CA)n Simple_repeat Simple_repeat 2 70 0 3 815 261 0 0 0 chr3 30258605 30258634 -129341149 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 3 815 252 0 0 0 chr3 30260524 30260552 -129339231 + (T)n Simple_repeat Simple_repeat 1 28 0 3 815 527 245 0 4 chr3 30261015 30261257 -129338526 + (CA)n Simple_repeat Simple_repeat 1 241 0 3 815 579 311 114 0 chr3 30261382 30261575 -129338208 + ID_B1 SINE B4 1 215 -9 3 815 203 133 22 0 chr3 30262520 30262526 -129337257 + (TAGA)n Simple_repeat Simple_repeat 4 9 0 3 815 261 119 0 0 chr3 30262526 30262568 -129337215 + (CAGA)n Simple_repeat Simple_repeat 3 44 0 3 815 1134 92 8 18 chr3 30262568 30262788 -129336995 + (TAGA)n Simple_repeat Simple_repeat 1 217 0 3 815 830 163 0 0 chr3 30262964 30263093 -129336690 + Lx5 LINE L1 6794 6922 -128 3 815 525 307 30 63 chr3 30264293 30264595 -129335188 + B4 SINE B4 1 292 0 3 815 273 196 0 0 chr3 30264603 30264659 -129335124 + (CA)n Simple_repeat Simple_repeat 1 56 0 3 815 338 100 0 16 chr3 30265238 30265299 -129334484 + (TTTG)n Simple_repeat Simple_repeat 1 60 0 3 815 434 259 115 74 chr3 30265339 30265556 -129334227 + MLT1K LTR MaLR 20 245 -350 3 815 249 247 63 52 chr3 30266281 30266391 -129333392 + B4A SINE B4 86 196 -96 3 815 324 0 0 0 chr3 30267048 30267084 -129332699 + (TA)n Simple_repeat Simple_repeat 1 36 0 3 815 536 286 0 134 chr3 30267200 30267386 -129332397 - B4 SINE B4 -116 176 16 3 815 441 308 30 0 chr3 30267455 30267588 -129332195 + MER5A DNA MER1_type 47 183 -6 3 815 1122 235 109 40 chr3 30269156 30269506 -129330277 + Lx8 LINE L1 7089 7462 -11 3 815 273 202 91 0 chr3 30269506 30269605 -129330178 + MER53 DNA hAT 17 124 -69 3 815 247 212 12 12 chr3 30269612 30269698 -129330085 + (TA)n Simple_repeat Simple_repeat 2 87 0 3 815 22 0 0 0 chr3 30269738 30269760 -129330023 + AT_rich Low_complexity Low_complexity 1 22 0 3 815 236 182 36 0 chr3 30269777 30269832 -129329951 + MER53 DNA hAT 137 193 0 3 815 233 29 0 29 chr3 30273050 30273085 -129326698 + (CAGA)n Simple_repeat Simple_repeat 2 35 0 3 815 267 169 42 0 chr3 30273275 30273346 -129326437 + CT-rich Low_complexity Low_complexity 1 74 0 3 815 456 312 19 13 chr3 30273504 30273663 -129326120 - RSINE1 SINE B4 -4 161 2 3 815 398 239 59 150 chr3 30273675 30273862 -129325921 - B4A SINE B4 -75 217 48 3 815 387 145 0 0 chr3 30273950 30274019 -129325764 + (TG)n Simple_repeat Simple_repeat 2 70 0 3 815 221 361 125 12 chr3 30277195 30277363 -129322420 - MIRc SINE MIR -68 200 14 3 816 261 269 93 65 chr3 30277886 30278025 -129321758 - MER5A DNA MER1_type -44 145 3 3 816 671 239 0 0 chr3 30279801 30279935 -129319848 + B1F1 SINE Alu 13 146 -3 3 816 306 164 0 0 chr3 30279936 30279991 -129319792 + (CATA)n Simple_repeat Simple_repeat 4 58 0 3 816 249 242 40 20 chr3 30280491 30280592 -129319191 - Lx7 LINE L1 -16 7680 7578 3 816 182 37 37 0 chr3 30280609 30280636 -129319147 + (TC)n Simple_repeat Simple_repeat 2 29 0 3 816 423 0 0 0 chr3 30280728 30280775 -129319008 + (GA)n Simple_repeat Simple_repeat 2 48 0 3 816 946 254 104 4 chr3 30280776 30281025 -129318758 - Lx7 LINE L1 -391 7305 7032 3 816 1606 230 131 10 chr3 30281032 30281436 -129318347 + Lx7 LINE L1 6537 6989 -707 3 816 411 219 175 8 chr3 30281552 30281672 -129318111 - B1_Mur1 SINE Alu -1 148 9 3 816 219 262 46 35 chr3 30282277 30282364 -129317419 - L2a LINE L2 -16 3410 3323 3 816 272 246 8 0 chr3 30283053 30283175 -129316608 + (CA)n Simple_repeat Simple_repeat 1 123 0 3 816 237 231 19 0 chr3 30283196 30283248 -129316535 + (CA)n Simple_repeat Simple_repeat 2 54 0 3 816 269 265 108 49 chr3 30283334 30283527 -129316256 - MIRc SINE MIR -56 206 12 3 816 213 253 161 46 chr3 30284964 30285051 -129314732 + B1F1 SINE Alu 1 97 -52 3 816 384 88 43 32 chr3 30285157 30285251 -129314532 + (TTTG)n Simple_repeat Simple_repeat 4 98 0 3 816 395 211 143 24 chr3 30286847 30286973 -129312810 - B1_Mus2 SINE Alu -5 142 2 3 816 600 232 157 22 chr3 30287612 30287797 -129311986 + B3 SINE B2 1 210 -6 3 816 432 200 0 0 chr3 30288514 30288609 -129311174 + (TTG)n Simple_repeat Simple_repeat 2 96 0 3 816 1201 270 34 53 chr3 30288877 30289148 -129310635 + MTEa LTR MaLR 3 264 -115 3 816 414 0 0 0 chr3 30289148 30289194 -129310589 + (CA)n Simple_repeat Simple_repeat 2 47 0 3 816 1201 270 34 53 chr3 30289194 30289301 -129310482 + MTEa LTR MaLR 265 373 -6 3 816 252 314 18 62 chr3 30290040 30290152 -129309631 - MER5A DNA MER1_type -76 113 7 3 816 491 310 133 4 chr3 30291969 30292209 -129307574 + B4A SINE B4 2 272 -20 3 816 450 0 0 0 chr3 30292216 30292266 -129307517 + (TC)n Simple_repeat Simple_repeat 1 50 0 3 816 279 0 0 0 chr3 30292266 30292296 -129307487 + (CA)n Simple_repeat Simple_repeat 1 31 0 3 816 23 33 0 0 chr3 30292569 30292599 -129307184 + AT_rich Low_complexity Low_complexity 1 30 0 3 816 287 219 16 0 chr3 30292780 30292844 -129306939 + B4A SINE B4 106 170 -122 3 816 252 279 0 0 chr3 30292888 30292914 -129306869 + (CA)n Simple_repeat Simple_repeat 2 27 0 3 816 189 0 0 0 chr3 30292914 30292935 -129306848 + (GA)n Simple_repeat Simple_repeat 2 22 0 3 816 252 279 0 0 chr3 30292935 30292969 -129306814 + (CA)n Simple_repeat Simple_repeat 2 35 0 3 816 378 292 38 23 chr3 30293133 30293266 -129306517 - RSINE1 SINE B4 -18 147 13 3 816 914 71 8 0 chr3 30295536 30295663 -129304120 + B1_Mus2 SINE Alu 19 146 -1 3 816 206 32 32 0 chr3 30295663 30295694 -129304089 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 3 816 514 282 104 32 chr3 30295931 30296180 -129303603 + L1MB7 LINE L1 5570 5836 -348 3 816 244 320 49 0 chr3 30296293 30296415 -129303368 + L1MB7 LINE L1 6041 6168 -16 3 816 297 301 88 27 chr3 30296918 30297065 -129302718 - MLT1B LTR MaLR -24 350 195 3 816 508 250 0 8 chr3 30297120 30297245 -129302538 - MLT1B LTR MaLR -252 138 15 3 816 368 327 111 13 chr3 30297300 30297526 -129302257 + MLT1J1 LTR MaLR 120 367 -77 3 816 650 295 123 4 chr3 30297544 30297772 -129302011 + B4 SINE B4 30 284 -8 3 816 392 177 12 12 chr3 30300448 30300528 -129299255 - PB1D10 SINE Alu -8 109 30 3 816 180 231 0 0 chr3 30302150 30302202 -129297581 + (CATATA)n Simple_repeat Simple_repeat 1 52 0 3 816 189 349 0 0 chr3 30302655 30302721 -129297062 - MIRc SINE MIR -16 252 187 3 816 352 299 126 0 chr3 30302872 30302999 -129296784 - MamRep1161 DNA TcMar -814 143 1 3 816 733 296 109 53 chr3 30303226 30303414 -129296369 + L1MA6 LINE L1 5428 5639 -661 3 816 474 125 0 0 chr3 30303414 30303494 -129296289 + (TG)n Simple_repeat Simple_repeat 1 80 0 3 816 733 296 109 53 chr3 30303494 30303529 -129296254 + L1MA6 LINE L1 5640 5659 -641 3 816 477 0 0 0 chr3 30303529 30303582 -129296201 + (TC)n Simple_repeat Simple_repeat 2 54 0 3 816 207 0 0 0 chr3 30303582 30303604 -129296179 + (TG)n Simple_repeat Simple_repeat 2 24 0 3 816 733 296 109 53 chr3 30303604 30303810 -129295973 + L1MA6 LINE L1 5660 5882 -418 3 816 331 358 92 30 chr3 30304913 30305218 -129294565 + L1ME3B LINE L1 5294 5617 -623 3 816 340 255 76 21 chr3 30305236 30305380 -129294403 + L1ME3B LINE L1 5711 5862 -378 3 816 359 267 0 10 chr3 30305535 30305637 -129294146 + PB1D7 SINE Alu 18 118 -2 3 816 380 232 39 39 chr3 30306348 30306451 -129293332 + B1_Mur4 SINE Alu 47 149 -1 3 816 390 290 0 61 chr3 30308385 30308499 -129291284 - PB1D10 SINE Alu -8 109 3 3 816 241 208 42 0 chr3 30308659 30308707 -129291076 + RSINE1 SINE B4 8 57 -108 4 816 383 270 83 65 chr3 30308828 30309058 -129290725 + B4A SINE B4 10 243 -49 4 816 255 79 0 0 chr3 30309099 30309137 -129290646 + (CA)n Simple_repeat Simple_repeat 1 38 0 4 816 186 43 0 0 chr3 30310406 30310429 -129289354 + (TATG)n Simple_repeat Simple_repeat 3 25 0 4 816 729 124 7 21 chr3 30311248 30311388 -129288395 + GA-rich Low_complexity Low_complexity 3 140 0 4 816 371 313 58 47 chr3 30313477 30313648 -129286135 + MIR SINE MIR 76 248 -14 4 816 599 103 17 8 chr3 30316379 30316496 -129283287 + L1_Mus4 LINE L1 6513 6630 -6 4 816 1010 273 58 7 chr3 30316700 30316977 -129282806 + B4A SINE B4 2 292 0 4 816 218 160 0 20 chr3 30316977 30317028 -129282755 + (CA)n Simple_repeat Simple_repeat 1 50 0 4 816 654 167 7 7 chr3 30317276 30317421 -129282362 - Lx9 LINE L1 -2 7642 7498 4 816 1957 168 39 36 chr3 30317446 30317835 -129281948 + Lx9 LINE L1 7063 7452 -192 4 816 1347 88 0 0 chr3 30318151 30318671 -129281112 + (CA)n Simple_repeat Simple_repeat 1 520 0 4 816 679 137 8 8 chr3 30319069 30319194 -129280589 + CT-rich Low_complexity Low_complexity 4 128 0 4 816 618 256 61 44 chr3 30320102 30320282 -129279501 + B3A SINE B2 1 183 -15 4 816 459 52 0 0 chr3 30320307 30320365 -129279418 + (GAAA)n Simple_repeat Simple_repeat 1 58 0 4 816 951 9 0 0 chr3 30320365 30320473 -129279310 + (GGGAA)n Simple_repeat Simple_repeat 2 109 0 4 816 722 124 0 8 chr3 30320473 30320595 -129279188 + (GGAA)n Simple_repeat Simple_repeat 1 121 0 4 816 285 29 0 0 chr3 30320845 30320879 -129278904 + (TC)n Simple_repeat Simple_repeat 2 35 0 4 816 432 0 0 0 chr3 30320879 30320926 -129278857 + (TG)n Simple_repeat Simple_repeat 1 48 0 4 816 585 270 69 0 chr3 30320927 30321116 -129278667 - B4A SINE B4 -87 205 4 4 816 4113 229 34 107 chr3 30321674 30323471 -129276312 + Lx5 LINE L1 5347 7031 -19 4 816 439 204 194 0 chr3 30324071 30324174 -129275609 + B3A SINE B2 29 151 -47 4 816 428 139 13 0 chr3 30324200 30324279 -129275504 + (TG)n Simple_repeat Simple_repeat 1 80 0 4 816 1096 260 3 30 chr3 30324296 30324505 -129275278 - B4A SINE B4 -2 290 88 4 816 270 0 0 0 chr3 30324505 30324535 -129275248 + (TTCA)n Simple_repeat Simple_repeat 1 30 0 4 816 1096 260 3 30 chr3 30324535 30324622 -129275161 - B4A SINE B4 -205 87 2 4 816 1055 222 9 5 chr3 30328190 30328403 -129271380 - B3 SINE B2 -2 214 1 4 816 869 308 87 16 chr3 30328403 30328770 -129271013 - Lx8 LINE L1 -142 7331 6939 4 816 225 211 26 26 chr3 30330945 30331023 -129268760 + (TA)n Simple_repeat Simple_repeat 1 78 0 4 816 195 162 0 0 chr3 30331681 30331718 -129268065 + (CATA)n Simple_repeat Simple_repeat 2 38 0 4 816 347 339 95 6 chr3 30332103 30332272 -129267511 + MER5A DNA MER1_type 1 184 -5 4 816 1047 228 126 14 chr3 30332276 30332625 -129267158 - MTD LTR MaLR -15 404 18 4 816 351 0 0 0 chr3 30333459 30333498 -129266285 + (CA)n Simple_repeat Simple_repeat 2 40 0 4 816 1298 128 66 0 chr3 30335824 30336035 -129263748 + URR1A DNA MER1_type 2 226 0 4 816 480 35 0 0 chr3 30337428 30337486 -129262297 + (GA)n Simple_repeat Simple_repeat 1 58 0 4 816 22 35 0 0 chr3 30337664 30337693 -129262090 + AT_rich Low_complexity Low_complexity 1 29 0 4 816 1449 210 218 4 chr3 30337810 30338288 -129261495 - Lx9 LINE L1 0 7644 7065 4 816 2609 211 42 16 chr3 30338290 30338786 -129260997 + Lx9 LINE L1 6352 6860 -784 4 816 1674 205 62 14 chr3 30339019 30339376 -129260407 + ORR1D1 LTR MaLR 1 374 0 4 816 1931 284 69 29 chr3 30339662 30340643 -129259140 + L1MA5 LINE L1 2348 3368 -2775 4 816 720 271 25 162 chr3 30340667 30341133 -129258650 + L1MA5 LINE L1 5557 5938 -362 4 816 207 88 0 0 chr3 30341639 30341673 -129258110 + (TTTTTG)n Simple_repeat Simple_repeat 3 36 0 4 816 1240 41 0 0 chr3 30341674 30341820 -129257963 - B1_Mm SINE Alu -1 146 1 4 816 1934 171 30 27 chr3 30342388 30342761 -129257022 - ORR1D1 LTR MaLR 0 374 1 4 816 341 250 181 0 chr3 30343139 30343255 -129256528 - ID_B1 SINE B4 -87 137 1 4 816 513 211 8 8 chr3 30343423 30343547 -129256236 + Lx2B LINE L1 6876 6999 -1 4 816 497 335 7 7 chr3 30343550 30343700 -129256083 + RSINE1 SINE B4 2 151 -14 4 816 21 0 0 0 chr3 30343750 30343771 -129256012 + AT_rich Low_complexity Low_complexity 1 21 0 4 816 180 111 0 0 chr3 30344703 30344730 -129255053 + (GAAA)n Simple_repeat Simple_repeat 3 29 0 4 816 633 288 57 45 chr3 30345942 30346189 -129253594 + B4 SINE B4 23 272 -20 4 816 243 88 0 0 chr3 30346193 30346227 -129253556 + (CA)n Simple_repeat Simple_repeat 1 34 0 4 816 610 100 10 10 chr3 30346227 30346319 -129253464 + (GA)n Simple_repeat Simple_repeat 1 93 0 4 816 942 58 0 0 chr3 30346319 30346440 -129253343 + (GAAA)n Simple_repeat Simple_repeat 4 124 0 4 816 610 100 10 10 chr3 30346440 30346448 -129253335 + (GA)n Simple_repeat Simple_repeat 2 9 0 4 816 345 162 0 0 chr3 30347004 30347072 -129252711 + CT-rich Low_complexity Low_complexity 2 69 0 4 816 475 200 54 26 chr3 30347106 30347230 -129252553 + PB1D9 SINE Alu 1 120 0 4 816 627 259 7 20 chr3 30347251 30347401 -129252382 + B1F SINE Alu 1 148 -1 4 816 586 93 19 0 chr3 30347914 30348022 -129251761 + (TC)n Simple_repeat Simple_repeat 2 111 0 4 816 270 0 0 0 chr3 30348022 30348052 -129251731 + (CA)n Simple_repeat Simple_repeat 1 30 0 4 816 610 257 26 39 chr3 30348770 30348913 -129250870 + RSINE1 SINE B4 2 144 -21 4 816 387 0 0 0 chr3 30348913 30348956 -129250827 + (CA)n Simple_repeat Simple_repeat 2 44 0 4 816 342 357 39 60 chr3 30349530 30349712 -129250071 - MLT1J2 LTR MaLR -13 435 258 4 816 227 312 26 0 chr3 30350043 30350120 -129249663 - MIRc SINE MIR -151 117 39 4 816 922 182 26 13 chr3 30350216 30350396 -129249387 + B3 SINE B2 4 205 -11 4 816 349 206 88 0 chr3 30350660 30350728 -129249055 + B4A SINE B4 133 206 -86 4 816 240 206 37 110 chr3 30350782 30350864 -129248919 + B4A SINE B4 217 292 0 4 816 354 23 0 0 chr3 30351077 30351120 -129248663 + HAL1-3A_ME LINE L1 1970 2012 -846 4 816 636 195 0 0 chr3 30351124 30351273 -129248510 + (CA)n Simple_repeat Simple_repeat 1 149 0 4 816 1243 230 86 112 chr3 30353278 30353708 -129246075 - MTD LTR MaLR 0 419 1 4 816 259 271 83 18 chr3 30353709 30353818 -129245965 + MamRep1161 DNA TcMar 38 153 -804 4 816 958 105 48 14 chr3 30354234 30354379 -129245404 + B1_Mur4 SINE Alu 1 150 0 4 816 561 30 0 0 chr3 30354770 30354837 -129244946 + (TAGA)n Simple_repeat Simple_repeat 4 70 0 4 816 290 262 12 12 chr3 30355435 30355520 -129244263 - MER20 DNA MER1_type 0 219 135 4 816 822 278 24 10 chr3 30355666 30355873 -129243910 + ID_B1 SINE B4 1 210 -14 4 816 604 332 44 50 chr3 30356241 30356539 -129243244 + MER121 Unknown Unknown 116 411 -1 4 816 286 205 12 12 chr3 30357734 30357818 -129241965 + CT-rich Low_complexity Low_complexity 2 85 0 4 816 253 184 97 16 chr3 30358577 30358662 -129241121 + ID2 SINE ID 7 96 -56 4 816 1171 82 0 0 chr3 30359181 30359328 -129240455 + B1_Mus1 SINE Alu 2 148 0 4 816 435 83 0 0 chr3 30359329 30359389 -129240394 + (GGA)n Simple_repeat Simple_repeat 2 61 0 4 816 477 50 0 0 chr3 30359389 30359449 -129240334 + (GA)n Simple_repeat Simple_repeat 1 60 0 4 816 405 0 0 0 chr3 30360091 30360136 -129239647 + (TC)n Simple_repeat Simple_repeat 2 46 0 4 816 27 0 0 0 chr3 30360159 30360186 -129239597 + AT_rich Low_complexity Low_complexity 1 27 0 4 816 402 57 0 0 chr3 30360326 30360379 -129239404 + (TG)n Simple_repeat Simple_repeat 2 54 0 4 816 258 312 39 0 chr3 30360382 30360459 -129239324 - ID4 SINE ID -3 80 1 4 816 778 169 41 27 chr3 30360491 30360637 -129239146 + B1_Mur3 SINE Alu 2 149 0 4 816 849 190 94 30 chr3 30360874 30361075 -129238708 - B3 SINE B2 -2 214 1 4 816 650 282 53 0 chr3 30361631 30361801 -129237982 - B3A SINE B2 -16 182 4 4 816 756 232 107 10 chr3 30361831 30362027 -129237756 + B3 SINE B2 1 215 -1 4 816 278 115 0 19 chr3 30362312 30362365 -129237418 + (TCTCCC)n Simple_repeat Simple_repeat 3 54 0 4 816 1203 83 0 0 chr3 30362502 30362671 -129237112 + (GAA)n Simple_repeat Simple_repeat 1 169 0 4 816 630 250 12 36 chr3 30363883 30364049 -129235734 + RSINE1 SINE B4 4 165 0 4 816 240 35 0 0 chr3 30364092 30364121 -129235662 + (GA)n Simple_repeat Simple_repeat 2 30 0 4 816 395 242 40 18 chr3 30364676 30364800 -129234983 - PB1D10 SINE Alu -25 122 1 4 816 591 246 20 14 chr3 30364800 30364857 -129234926 - ID SINE ID -145 79 22 4 816 356 248 43 17 chr3 30366053 30366168 -129233615 + MIR3 SINE MIR 81 198 -10 4 816 494 280 113 11 chr3 30366285 30366462 -129233321 - ID_B1 SINE B4 -29 195 1 4 816 599 226 0 0 chr3 30366764 30366870 -129232913 + RSINE1 SINE B4 3 108 -57 4 816 282 273 13 0 chr3 30366977 30367054 -129232729 + ID4 SINE ID 2 79 -4 4 816 213 298 8 53 chr3 30367693 30367728 -129232055 + polypurine Low_complexity Low_complexity 5 37 0 4 816 324 265 0 0 chr3 30367728 30367796 -129231987 + ID4 SINE ID 2 69 -14 4 816 246 282 4 55 chr3 30367796 30367893 -129231890 + GA-rich Low_complexity Low_complexity 1 92 0 4 816 541 296 6 12 chr3 30368498 30368659 -129231124 - RSINE1 SINE B4 -3 162 3 4 816 474 18 0 0 chr3 30368758 30368813 -129230970 + (TG)n Simple_repeat Simple_repeat 1 55 0 4 816 1242 95 0 0 chr3 30369971 30370150 -129229633 + (GGGAA)n Simple_repeat Simple_repeat 1 179 0 4 816 791 219 33 0 chr3 30370321 30370504 -129229279 + ID_B1 SINE B4 5 193 -31 5 816 419 177 10 0 chr3 30370613 30370709 -129229074 + G-rich Low_complexity Low_complexity 5 101 0 5 816 859 284 50 29 chr3 30374127 30374406 -129225377 - B4 SINE B4 -4 288 4 5 816 452 193 11 39 chr3 30375462 30375640 -129224143 + (TATATG)n Simple_repeat Simple_repeat 6 178 0 5 816 348 24 0 0 chr3 30375735 30375776 -129224007 + (TCC)n Simple_repeat Simple_repeat 2 42 0 5 816 21 0 0 0 chr3 30375885 30375906 -129223877 + AT_rich Low_complexity Low_complexity 1 21 0 5 816 425 229 0 8 chr3 30376769 30376901 -129222882 + (CATATA)n Simple_repeat Simple_repeat 2 132 0 5 816 344 138 15 0 chr3 30378511 30378576 -129221207 + (CA)n Simple_repeat Simple_repeat 2 67 0 5 816 331 211 0 152 chr3 30378720 30378736 -129221047 - PB1D9 SINE Alu 0 120 108 5 816 324 0 0 0 chr3 30378736 30378772 -129221011 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 5 816 331 211 0 152 chr3 30378772 30378867 -129220916 - PB1D9 SINE Alu -13 107 26 5 816 673 258 0 25 chr3 30378924 30379087 -129220696 - RSINE1 SINE B4 -4 161 3 5 816 1719 11 5 0 chr3 30379132 30379323 -129220460 + B2_Mm1a SINE B2 2 193 0 5 816 182 327 52 17 chr3 30379995 30380110 -129219673 + MIRb SINE MIR 74 192 -76 5 816 1135 43 43 0 chr3 30380473 30380614 -129219169 + B1_Mm SINE Alu 1 147 0 5 816 392 319 103 43 chr3 30380649 30381048 -129218735 - L3 LINE CR1 -400 4089 3667 5 816 326 151 110 0 chr3 30381322 30381395 -129218388 - B3 SINE B2 -6 210 130 5 816 441 0 0 0 chr3 30381523 30381572 -129218211 + (TG)n Simple_repeat Simple_repeat 2 50 0 5 816 473 281 16 0 chr3 30381573 30381694 -129218089 - B3A SINE B2 -75 123 1 5 816 932 255 228 2 chr3 30381695 30382108 -129217675 + RCHARR1 DNA MER1_type 466 971 -3 5 816 259 349 49 68 chr3 30383471 30383634 -129216149 + MLT1J2 LTR MaLR 288 447 -1 5 816 262 246 31 0 chr3 30384012 30384077 -129215706 - MLT1I LTR MaLR -4 407 341 5 816 1029 208 38 14 chr3 30384333 30384543 -129215240 + B3 SINE B2 2 216 0 5 816 215 277 73 21 chr3 30385878 30385974 -129213809 - MIRc SINE MIR -120 148 48 5 816 894 297 8 4 chr3 30386745 30387005 -129212778 - B4A SINE B4 -31 261 1 5 816 218 56 0 27 chr3 30387242 30387279 -129212504 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 5 816 508 196 14 43 chr3 30388352 30388491 -129211292 - Lx7 LINE L1 0 7696 7562 5 816 212 115 72 60 chr3 30388564 30388647 -129211136 + (TATAG)n Simple_repeat Simple_repeat 2 85 0 5 816 324 0 0 0 chr3 30390461 30390497 -129209286 + (A)n Simple_repeat Simple_repeat 1 36 0 5 816 202 282 110 37 chr3 30390726 30390862 -129208921 + MIRb SINE MIR 34 179 -89 5 816 223 331 71 16 chr3 30391127 30391253 -129208530 - MIRc SINE MIR -98 170 38 5 816 262 280 96 41 chr3 30391431 30391628 -129208155 - Lx7 LINE L1 0 7696 7489 5 816 4613 191 42 3 chr3 30391643 30392568 -129207215 - Lx7 LINE L1 -358 7338 6378 5 816 873 269 18 22 chr3 30392572 30392800 -129206983 - B4A SINE B4 -63 229 3 5 816 670 115 0 17 chr3 30393084 30393199 -129206584 + L1Md_F2 LINE L1 6458 6570 -12 5 816 608 240 162 30 chr3 30393766 30393964 -129205819 + ID_B1 SINE B4 1 224 0 5 816 285 188 0 34 chr3 30393976 30394064 -129205719 + GA-rich Low_complexity Low_complexity 3 87 0 5 816 513 314 14 14 chr3 30394506 30394648 -129205135 + RSINE1 SINE B4 3 144 -21 5 816 345 100 0 0 chr3 30394659 30394709 -129205074 + (CA)n Simple_repeat Simple_repeat 1 50 0 5 816 807 283 0 5 chr3 30394737 30394925 -129204858 + B3 SINE B2 2 188 -28 5 816 310 286 0 81 chr3 30395149 30395309 -129204474 + L2c LINE L2 3241 3387 0 5 816 418 296 91 65 chr3 30395638 30395869 -129203914 + B4 SINE B4 42 278 -14 5 816 381 123 0 0 chr3 30396525 30396590 -129203193 + (CA)n Simple_repeat Simple_repeat 1 65 0 5 816 438 172 8 33 chr3 30397840 30397960 -129201823 + (TATG)n Simple_repeat Simple_repeat 3 119 0 5 816 216 97 0 0 chr3 30398044 30398075 -129201708 + (CAA)n Simple_repeat Simple_repeat 3 33 0 5 816 514 331 36 21 chr3 30398300 30398494 -129201289 + B4A SINE B4 83 279 -13 5 816 378 0 0 0 chr3 30398512 30398554 -129201229 + (CA)n Simple_repeat Simple_repeat 2 43 0 5 816 189 74 0 0 chr3 30400236 30400263 -129199520 + (TTG)n Simple_repeat Simple_repeat 2 28 0 5 816 660 163 23 11 chr3 30400418 30400592 -129199191 + (CA)n Simple_repeat Simple_repeat 1 176 0 5 816 899 94 17 29 chr3 30401955 30402130 -129197653 + (GAAA)n Simple_repeat Simple_repeat 4 176 0 5 816 597 52 0 0 chr3 30404228 30404305 -129195478 + (GA)n Simple_repeat Simple_repeat 2 78 0 5 816 342 0 0 0 chr3 30406411 30406449 -129193334 + (CA)n Simple_repeat Simple_repeat 2 39 0 5 816 222 255 0 0 chr3 30407898 30407949 -129191834 + C-rich Low_complexity Low_complexity 1 51 0 5 816 532 161 14 0 chr3 30408458 30408601 -129191182 + CT-rich Low_complexity Low_complexity 1 145 0 5 817 225 159 0 0 chr3 30408841 30408885 -129190898 + A-rich Low_complexity Low_complexity 3 46 0 5 817 270 0 0 0 chr3 30413764 30413794 -129185989 + (A)n Simple_repeat Simple_repeat 1 30 0 5 817 584 211 0 15 chr3 30414490 30414620 -129185163 - MER5A1 DNA MER1_type -10 156 29 5 817 367 200 25 12 chr3 30415278 30415359 -129184424 - PB1D9 SINE Alu -37 83 2 5 817 180 254 212 34 chr3 30415410 30415528 -129184255 + MIRb SINE MIR 77 215 -53 5 817 1008 73 0 0 chr3 30415649 30415800 -129183983 + (TG)n Simple_repeat Simple_repeat 1 151 0 5 817 276 252 33 75 chr3 30417260 30417380 -129182403 + PB1D10 SINE Alu 1 115 -2 5 817 327 96 0 0 chr3 30417385 30417437 -129182346 + (CAAA)n Simple_repeat Simple_repeat 2 53 0 5 817 2790 199 8 118 chr3 30417896 30418643 -129181140 - RMER1B Other Other 0 1066 402 5 817 257 290 32 21 chr3 30418691 30418786 -129180997 + B1F SINE Alu 2 97 -52 5 817 195 100 0 0 chr3 30419261 30419291 -129180492 + (A)n Simple_repeat Simple_repeat 1 30 0 5 817 731 262 65 56 chr3 30419439 30419653 -129180130 + B3 SINE B2 1 216 0 5 817 1074 63 176 0 chr3 30419773 30419932 -129179851 + B2_Mm1t SINE B2 1 187 -6 5 817 7698 68 7 3 chr3 30421487 30422576 -129177207 - L1_Mus2 LINE L1 0 6566 5495 5 817 408 30 30 15 chr3 30422576 30422643 -129177140 + (TTG)n Simple_repeat Simple_repeat 2 69 0 5 817 791 223 115 16 chr3 30423865 30424056 -129175727 - B3 SINE B2 -6 210 1 5 817 1449 73 11 0 chr3 30424765 30424956 -129174827 - B2_Mm1t SINE B2 0 193 1 5 817 1713 102 41 0 chr3 30425069 30425335 -129174448 - ORR1A2 LTR MaLR -8 319 43 5 817 654 119 0 10 chr3 30425332 30425434 -129174349 + ORR1A2 LTR MaLR 158 258 -69 5 817 417 100 0 0 chr3 30425432 30425492 -129174291 - ORR1A2 LTR MaLR -267 60 1 5 817 255 61 0 0 chr3 30425724 30425757 -129174026 + (T)n Simple_repeat Simple_repeat 1 33 0 5 817 1181 68 0 0 chr3 30425757 30425903 -129173880 - B1_Mus2 SINE Alu 0 147 2 5 817 181 394 21 21 chr3 30425913 30426053 -129173730 + MER5B DNA MER1_type 8 147 -31 5 817 449 172 14 0 chr3 30426510 30426655 -129173128 + (CATATA)n Simple_repeat Simple_repeat 2 148 0 5 817 823 219 28 19 chr3 30426655 30426848 -129172935 - B3A SINE B2 -13 182 1 5 817 548 245 108 24 chr3 30426889 30427056 -129172727 + B3A SINE B2 2 182 -16 5 817 645 239 194 0 chr3 30427088 30427268 -129172515 + B3 SINE B2 2 216 0 5 817 1344 74 11 0 chr3 30428359 30428535 -129171248 + B2_Mm1t SINE B2 2 179 -14 5 817 402 73 0 0 chr3 30428563 30428618 -129171165 + B2_Mm2 SINE B2 47 101 -94 5 817 29 0 0 0 chr3 30428641 30428670 -129171113 + AT_rich Low_complexity Low_complexity 1 29 0 5 817 457 229 76 0 chr3 30429713 30429818 -129169965 + B1F SINE Alu 24 136 -13 5 817 315 0 0 0 chr3 30429906 30429941 -129169842 + (TTTA)n Simple_repeat Simple_repeat 4 38 0 5 817 686 245 7 0 chr3 30430001 30430156 -129169627 - MER2 DNA MER2_type -39 306 151 5 817 2028 115 17 111 chr3 30430290 30430651 -129169132 + ORR1A2 LTR MaLR 1 327 0 5 817 2135 133 33 66 chr3 30430958 30431351 -129168432 - ORR1C2 LTR MaLR -4 380 1 5 817 517 229 42 17 chr3 30431871 30431991 -129167792 + B3 SINE B2 1 123 -93 5 817 360 0 0 0 chr3 30432006 30432046 -129167737 + (CA)n Simple_repeat Simple_repeat 1 40 0 5 817 302 355 8 40 chr3 30432175 30432301 -129167482 + RSINE1 SINE B4 42 163 -2 5 817 2464 138 193 4 chr3 30433426 30433907 -129165876 + RMER15 LTR ERVL 1 572 -3 5 817 468 0 0 0 chr3 30434017 30434069 -129165714 + (TTTTA)n Simple_repeat Simple_repeat 4 55 0 5 817 770 174 7 7 chr3 30434073 30434218 -129165565 - B1_Mus1 SINE Alu -2 146 2 5 817 374 207 124 22 chr3 30434668 30434717 -129165066 + RMER1C Other Other 194 253 -1089 5 817 387 0 0 0 chr3 30434717 30434760 -129165023 + (TG)n Simple_repeat Simple_repeat 2 44 0 5 817 374 207 124 22 chr3 30434760 30434799 -129164984 + RMER1C Other Other 254 291 -1051 5 817 1178 262 27 0 chr3 30435052 30435353 -129164430 + RMER1C Other Other 675 983 -359 5 817 1592 157 95 7 chr3 30435372 30435667 -129164116 + Lx5 LINE L1 6730 7050 0 5 817 1517 164 174 0 chr3 30435749 30436036 -129163747 + RMER1C Other Other 1006 1342 0 5 817 688 306 78 19 chr3 30436453 30436723 -129163060 - B4A SINE B4 0 292 7 5 817 503 105 26 0 chr3 30436867 30436943 -129162840 + L1_Mur3 LINE L1 1736 1813 -4067 5 817 1247 149 5 0 chr3 30436960 30437174 -129162609 + Lx6 LINE L1 5203 5417 -463 5 817 1195 166 5 0 chr3 30437174 30437373 -129162410 + B3 SINE B2 10 209 -7 5 817 7085 171 47 13 chr3 30437395 30438143 -129161640 + Lx6 LINE L1 5406 6176 -1284 5 817 375 125 0 0 chr3 30438143 30438215 -129161568 + (TG)n Simple_repeat Simple_repeat 1 72 0 5 817 7085 204 38 30 chr3 30438215 30438728 -129161055 + Lx6 LINE L1 6177 6687 -773 5 817 752 70 254 0 chr3 30438728 30438842 -129160941 + B1_Mus1 SINE Alu 1 143 -5 6 817 270 0 0 0 chr3 30438845 30438875 -129160908 + (TAA)n Simple_repeat Simple_repeat 2 31 0 6 817 7085 204 38 30 chr3 30438875 30439278 -129160505 + Lx6 LINE L1 6688 7105 -355 5 817 749 195 78 160 chr3 30439286 30439496 -129160287 + MT2A LTR ERVL 1 191 -342 6 817 540 42 0 0 chr3 30439496 30439567 -129160216 + (TC)n Simple_repeat Simple_repeat 1 71 0 6 817 749 195 78 160 chr3 30439567 30439600 -129160183 + MT2A LTR ERVL 192 224 -309 6 817 1599 209 21 35 chr3 30439664 30440100 -129159683 - Lx6 LINE L1 -572 6888 6585 6 817 543 214 73 7 chr3 30440111 30440258 -129159525 + MT2A LTR ERVL 348 584 0 6 817 1417 273 46 73 chr3 30440259 30440847 -129158936 + Lx7 LINE L1 7125 7696 0 6 817 435 178 190 25 chr3 30440853 30440974 -129158809 - MLT1A0 LTR MaLR -224 141 1 6 817 276 130 0 0 chr3 30441186 30441232 -129158551 + (CA)n Simple_repeat Simple_repeat 2 47 0 6 817 1343 250 26 9 chr3 30441356 30441703 -129158080 + MTEb LTR MaLR 20 372 -7 6 817 262 320 67 19 chr3 30441790 30441895 -129157888 + B1F SINE Alu 19 128 -21 6 817 397 286 208 32 chr3 30442072 30442320 -129157463 + B4A SINE B4 1 292 0 6 817 396 299 0 0 chr3 30442325 30442614 -129157169 + (CA)n Simple_repeat Simple_repeat 1 289 0 6 817 1258 69 52 0 chr3 30442703 30442877 -129156906 - B2_Mm2 SINE B2 -8 187 5 6 817 432 239 107 105 chr3 30443371 30443592 -129156191 + LTR16C LTR ERVL 296 535 -3 6 817 374 286 150 40 chr3 30443680 30443880 -129155903 + B4 SINE B4 59 280 -12 6 817 435 19 0 0 chr3 30443884 30443936 -129155847 + (CA)n Simple_repeat Simple_repeat 1 52 0 6 817 289 322 52 78 chr3 30444235 30444427 -129155356 + MLT1N2 LTR MaLR 8 194 -368 6 817 245 125 0 18 chr3 30444669 30444726 -129155057 + (TTGG)n Simple_repeat Simple_repeat 2 57 0 6 817 223 169 16 33 chr3 30444726 30444779 -129155004 + T-rich Low_complexity Low_complexity 11 63 0 6 817 216 0 0 0 chr3 30444779 30444803 -129154980 + (GTTTG)n Simple_repeat Simple_repeat 1 24 0 6 817 954 243 18 61 chr3 30444837 30445065 -129154718 - ID_B1 SINE B4 -5 219 2 6 817 728 270 75 0 chr3 30447078 30447278 -129152505 + B3 SINE B2 2 216 0 6 817 450 260 40 14 chr3 30447350 30447498 -129152285 - MLT1E3 LTR MaLR 0 624 473 6 817 308 57 86 0 chr3 30447657 30447727 -129152056 + (TTTTTG)n Simple_repeat Simple_repeat 4 79 0 6 817 471 301 19 0 chr3 30448126 30448279 -129151504 + MLT1A0 LTR MaLR 1 156 -209 6 817 225 311 0 0 chr3 30448279 30448340 -129151443 + RSINE1 SINE B4 3 63 -102 6 817 276 303 60 40 chr3 30448391 30448542 -129151241 + MLT1A0 LTR MaLR 215 368 -40 6 817 219 204 0 0 chr3 30448808 30448862 -129150921 + (TG)n Simple_repeat Simple_repeat 1 54 0 6 817 234 321 0 0 chr3 30448959 30449015 -129150768 - ID_B1 SINE B4 -88 136 81 6 817 195 164 32 16 chr3 30449030 30449092 -129150691 + T-rich Low_complexity Low_complexity 5 67 0 6 817 237 219 120 40 chr3 30449113 30449213 -129150570 - L1MD LINE L1 -1796 4350 4243 6 817 31 26 0 0 chr3 30449215 30449253 -129150530 + AT_rich Low_complexity Low_complexity 1 38 0 6 817 537 235 129 0 chr3 30449305 30449437 -129150346 - B3A SINE B2 -47 151 3 6 817 435 141 0 11 chr3 30449515 30449617 -129150166 - ORR1C1 LTR MaLR -276 98 1 6 817 380 213 186 84 chr3 30449728 30449810 -129149973 - L1M2 LINE L1 -780 5363 5286 6 817 625 259 28 0 chr3 30449810 30449953 -129149830 - RSINE1 SINE B4 -18 147 1 6 817 380 213 186 84 chr3 30449953 30450096 -129149687 - L1M2 LINE L1 -858 5285 5115 6 817 5009 174 69 15 chr3 30450099 30451053 -129148730 - Lx5 LINE L1 -11 7039 6034 6 817 5486 144 33 7 chr3 30451050 30451947 -129147836 - L1_Mur2 LINE L1 -34 5843 4923 6 817 1315 212 64 0 chr3 30451947 30452244 -129147539 - MTC LTR MaLR -105 316 1 6 817 284 281 202 0 chr3 30453429 30453518 -129146265 + PB1D10 SINE Alu 1 104 -45 6 817 386 275 101 47 chr3 30453537 30453655 -129146128 + RSINE1 SINE B4 3 125 -40 6 817 363 44 0 0 chr3 30453655 30453700 -129146083 + (TG)n Simple_repeat Simple_repeat 1 45 0 6 817 386 275 101 47 chr3 30453700 30453730 -129146053 + RSINE1 SINE B4 126 159 -6 6 817 361 212 0 0 chr3 30453951 30454017 -129145766 + tRNA-Ala-GCY_ tRNA tRNA 3 68 -7 6 817 371 292 202 51 chr3 30454137 30454442 -129145341 - MTD LTR MaLR -48 371 21 6 817 25 0 0 0 chr3 30454713 30454738 -129145045 + AT_rich Low_complexity Low_complexity 1 25 0 6 817 868 181 0 26 chr3 30454739 30454892 -129144891 - B1_Mur3 SINE Alu 0 149 1 6 817 23 0 0 0 chr3 30457618 30457641 -129142142 + AT_rich Low_complexity Low_complexity 1 23 0 6 817 678 258 7 0 chr3 30457730 30457881 -129141902 + B3A SINE B2 1 152 -46 6 817 708 74 0 0 chr3 30457886 30457981 -129141802 + (CA)n Simple_repeat Simple_repeat 1 95 0 6 817 792 211 126 0 chr3 30457981 30458171 -129141612 + B3 SINE B2 3 216 0 6 817 1593 138 120 67 chr3 30458759 30459100 -129140683 + RLTR15 LTR ERVK 1 359 0 6 817 396 0 0 0 chr3 30459466 30459510 -129140273 + (TC)n Simple_repeat Simple_repeat 1 44 0 6 817 378 0 0 0 chr3 30459510 30459551 -129140232 + (CA)n Simple_repeat Simple_repeat 1 42 0 6 817 480 279 31 0 chr3 30460374 30460503 -129139280 + B1_Mus2 SINE Alu 2 134 -13 6 817 708 122 364 7 chr3 30461122 30461262 -129138521 + B2_Mm2 SINE B2 1 190 -5 6 817 912 125 0 0 chr3 30461511 30461647 -129138136 + B1_Mur3 SINE Alu 6 141 -8 6 817 180 0 0 0 chr3 30461647 30461667 -129138116 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 6 817 242 216 0 13 chr3 30461986 30462061 -129137722 + (TATG)n Simple_repeat Simple_repeat 2 75 0 6 817 2409 43 52 0 chr3 30462653 30462977 -129136806 + MTA_Mm LTR MaLR 1 341 -55 6 817 4519 10 2 0 chr3 30462977 30463469 -129136314 - MT2_Mm LTR ERVL 0 493 1 6 817 321 0 0 0 chr3 30463469 30463507 -129136276 - MERVL-int LTR ERVL 0 5485 5448 6 817 344 179 46 35 chr3 30463507 30463594 -129136189 - ORR1A3-int LTR MaLR -1323 640 553 6 817 9179 27 1 0 chr3 30463594 30464627 -129135156 - MERVL-int LTR ERVL -125 5360 4327 6 817 505 111 0 0 chr3 30464621 30464693 -129135090 + RMER16-int LTR ERVK 4105 4176 -1230 6 817 596 234 55 47 chr3 30464701 30465075 -129134708 + ETnERV2-int LTR ERVK 6097 6422 -984 6 817 335 155 40 40 chr3 30465291 30465365 -129134418 + ETnERV2-int LTR ERVK 7331 7404 -2 6 817 1981 162 22 95 chr3 30465366 30465698 -129134085 + RLTR9B LTR ERVK 1 316 -121 6 817 1241 61 0 0 chr3 30465698 30465845 -129133938 - B1_Mus2 SINE Alu 0 147 1 6 817 1981 162 22 95 chr3 30465845 30465976 -129133807 + RLTR9B LTR ERVK 317 430 -7 6 817 373 141 16 0 chr3 30465977 30466041 -129133742 - ORR1A1 LTR MaLR -106 240 176 6 817 4519 10 2 0 chr3 30466041 30466533 -129133250 - MT2_Mm LTR ERVL 0 493 1 6 817 471 33 0 0 chr3 30466533 30466593 -129133190 + MTB LTR MaLR 341 400 0 6 817 514 323 130 13 chr3 30466646 30466953 -129132830 - Lx8 LINE L1 -29 7444 7102 6 817 1059 296 116 64 chr3 30467108 30467391 -129132392 - L1MD2 LINE L1 -5 6354 6030 6 817 1225 104 49 6 chr3 30467391 30467574 -129132209 - B2_Mm2 SINE B2 -4 191 1 6 817 1059 296 116 64 chr3 30467574 30467781 -129132002 - L1MD2 LINE L1 -330 6029 5838 6 817 2027 130 12 58 chr3 30467781 30468123 -129131660 + ORR1A3 LTR MaLR 1 326 0 6 817 1059 296 116 64 chr3 30468123 30468348 -129131435 - L1MD2 LINE L1 -522 5837 5601 6 817 438 20 0 0 chr3 30468348 30468399 -129131384 + (CA)n Simple_repeat Simple_repeat 2 52 0 6 817 451 286 56 21 chr3 30468488 30468631 -129131152 + RSINE1 SINE B4 2 149 -16 6 817 1350 109 16 0 chr3 30469236 30469428 -129130355 - B2_Mm2 SINE B2 0 195 1 6 817 322 227 144 0 chr3 30469805 30469902 -129129881 + B1F1 SINE Alu 3 113 -36 6 817 254 375 0 0 chr3 30470286 30470422 -129129361 + (TGG)n Simple_repeat Simple_repeat 1 136 0 6 817 712 234 83 5 chr3 30470799 30470992 -129128791 + RLTR19-int LTR ERVK 1426 1633 -4504 6 817 894 63 0 0 chr3 30470992 30471118 -129128665 + (TAGA)n Simple_repeat Simple_repeat 2 127 0 6 817 21 0 0 0 chr3 30471190 30471211 -129128572 + AT_rich Low_complexity Low_complexity 1 21 0 6 817 428 143 20 0 chr3 30471211 30471309 -129128474 - Lx4A LINE L1 -1 7057 6958 6 817 1655 192 24 45 chr3 30471309 30471691 -129128092 + RLTR19-int LTR ERVK 1631 2004 -4133 6 817 625 250 21 32 chr3 30471907 30472097 -129127686 - L1_Mur3 LINE L1 -59 5821 5634 6 817 342 252 67 78 chr3 30472194 30472402 -129127381 - L1_Mur3 LINE L1 -461 5422 5212 6 817 2060 144 19 19 chr3 30472428 30472796 -129126987 - RLTR9A LTR ERVK 0 368 1 6 817 378 0 0 0 chr3 30472824 30472866 -129126917 + (TG)n Simple_repeat Simple_repeat 1 42 0 6 817 441 0 0 0 chr3 30472866 30472914 -129126869 + (GA)n Simple_repeat Simple_repeat 1 49 0 6 817 291 54 0 0 chr3 30473318 30473355 -129126428 + (TTCA)n Simple_repeat Simple_repeat 1 37 0 6 817 225 292 0 53 chr3 30473514 30473590 -129126193 + MTEb LTR MaLR 254 325 -54 6 817 1206 48 7 0 chr3 30473623 30473769 -129126014 - B1_Mus1 SINE Alu 0 148 2 6 817 1732 155 92 37 chr3 30474336 30474684 -129125099 + ORR1B2 LTR MaLR 1 367 0 6 817 202 319 13 7 chr3 30475404 30475507 -129124276 + MIR SINE MIR 85 180 -82 6 817 853 239 34 5 chr3 30475646 30475852 -129123931 - B3 SINE B2 -4 212 1 6 817 375 323 23 0 chr3 30476277 30476407 -129123376 + RSINE1 SINE B4 4 136 -29 6 817 876 189 0 13 chr3 30476441 30476591 -129123192 + B1_Mur4 SINE Alu 1 148 -2 6 817 711 247 103 115 chr3 30476720 30476981 -129122802 - B4A SINE B4 0 292 35 6 817 274 189 9 35 chr3 30477073 30477188 -129122595 + (TA)n Simple_repeat Simple_repeat 1 112 0 6 817 3788 20 55 13 chr3 30477901 30478357 -129121426 - IAPLTR2_Mm LTR ERVK 0 475 1 6 817 566 239 100 6 chr3 30478480 30478640 -129121143 - B3 SINE B2 -6 210 36 6 817 201 39 0 0 chr3 30478660 30478686 -129121097 + (TTG)n Simple_repeat Simple_repeat 2 27 0 6 817 249 341 159 23 chr3 30479150 30479162 -129120621 - RSINE1 SINE B4 -10 155 145 6 817 387 0 0 0 chr3 30479162 30479205 -129120578 + (TG)n Simple_repeat Simple_repeat 2 44 0 6 817 249 341 159 23 chr3 30479205 30479324 -129120459 - RSINE1 SINE B4 -21 144 6 6 817 335 293 66 73 chr3 30479449 30479600 -129120183 - MER77 LTR ERVL -248 359 210 6 817 385 264 62 23 chr3 30480021 30480149 -129119634 + B1_Mur2 SINE Alu 2 134 -15 6 817 461 253 142 77 chr3 30480376 30480650 -129119133 + B4A SINE B4 1 292 0 7 817 474 275 6 48 chr3 30481014 30481182 -129118601 - RMER4A LTR ERVK -280 186 26 7 817 6208 176 54 30 chr3 30481504 30483203 -129116580 + Lx6 LINE L1 247 2509 -3371 7 817 363 172 3 0 chr3 30483193 30483271 -129116512 + Lx6 LINE L1 4757 4844 -1042 7 817 429 176 9 18 chr3 30483274 30483384 -129116399 + GA-rich Low_complexity Low_complexity 1 109 0 7 817 4958 151 66 39 chr3 30483408 30483799 -129115984 + Lx6 LINE L1 4841 5235 -645 7 817 204 40 0 0 chr3 30483799 30483824 -129115959 + (TATATG)n Simple_repeat Simple_repeat 2 26 0 7 817 6859 200 63 48 chr3 30483824 30485158 -129114625 + Lx6 LINE L1 5236 6576 -884 7 817 2982 101 5 7 chr3 30485158 30485579 -129114204 + L1_Mus3 LINE L1 6212 6631 -7 7 817 6859 242 60 56 chr3 30485579 30485779 -129114004 + Lx6 LINE L1 6577 6738 -722 7 817 213 39 0 0 chr3 30485779 30485805 -129113978 + (TTAA)n Simple_repeat Simple_repeat 3 28 0 7 817 6859 242 60 56 chr3 30485805 30486450 -129113333 + Lx6 LINE L1 6739 7444 -16 7 817 500 281 55 18 chr3 30486532 30486695 -129113088 + MTEa LTR MaLR 9 177 -202 7 817 276 294 35 0 chr3 30486828 30486913 -129112870 - PB1D10 SINE Alu -9 108 21 7 817 1531 107 163 13 chr3 30486978 30487149 -129112634 + RMER17C LTR ERVK 1 221 -189 7 817 450 0 0 0 chr3 30487149 30487199 -129112584 + (TCC)n Simple_repeat Simple_repeat 3 52 0 7 817 360 0 0 0 chr3 30487201 30487241 -129112542 + (TC)n Simple_repeat Simple_repeat 2 41 0 7 817 1531 107 163 13 chr3 30487241 30487379 -129112404 + RMER17C LTR ERVK 222 357 -53 7 817 467 262 261 28 chr3 30487418 30487740 -129112043 - MER82 DNA MER2_type -212 441 45 7 817 1656 215 64 58 chr3 30487906 30488374 -129111409 + RMER19C LTR ERVK 141 611 0 7 817 183 129 0 0 chr3 30488637 30488668 -129111115 + (GGA)n Simple_repeat Simple_repeat 2 32 0 7 817 4261 202 12 40 chr3 30488671 30489616 -129110167 + RMER3D-int LTR ERVK 1924 2841 -1 7 817 665 153 46 7 chr3 30489616 30489767 -129110016 + RLTR31_Mur LTR ERVK 1 157 -396 7 817 416 112 56 0 chr3 30489768 30489857 -129109926 + GA-rich Low_complexity Low_complexity 1 94 0 7 817 1493 243 19 62 chr3 30489857 30490403 -129109380 + RLTR31_Mur LTR ERVK 62 549 -4 7 817 633 221 323 77 chr3 30490527 30490909 -129108874 + MT2A LTR ERVL 1 557 -44 7 817 266 82 41 0 chr3 30490909 30490958 -129108825 + (CAGAGA)n Simple_repeat Simple_repeat 2 52 0 7 817 534 234 103 34 chr3 30490958 30490994 -129108789 + MT2A LTR ERVL 558 601 0 7 817 280 265 82 0 chr3 30491207 30491305 -129108478 + PB1D10 SINE Alu 8 113 -4 7 817 506 288 104 6 chr3 30491548 30491712 -129108071 + ID_B1 SINE B4 28 207 -17 7 817 618 146 0 0 chr3 30491965 30492075 -129107708 + (GA)n Simple_repeat Simple_repeat 1 110 0 7 817 655 137 8 8 chr3 30492491 30492616 -129107167 + CT-rich Low_complexity Low_complexity 1 125 0 7 817 469 275 16 16 chr3 30492795 30492917 -129106866 - B4A SINE B4 -170 122 1 7 817 311 222 40 10 chr3 30492942 30493042 -129106741 - BC1_Mm scRNA scRNA -48 104 2 7 817 208 318 0 0 chr3 30493328 30493366 -129106417 + polypyrimidine Low_complexity Low_complexity 29 66 0 7 817 275 234 82 27 chr3 30493366 30493476 -129106307 - PB1D9 SINE Alu 0 120 5 7 817 208 318 0 0 chr3 30493476 30493503 -129106280 + polypyrimidine Low_complexity Low_complexity 2 28 0 7 817 459 205 0 59 chr3 30493513 30493528 -129106255 - B1_Mus2 SINE Alu -1 146 136 7 817 240 59 0 0 chr3 30493528 30493562 -129106221 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 7 817 508 184 10 0 chr3 30493562 30493665 -129106118 - B1_Mur3 SINE Alu -11 138 35 7 817 217 289 155 12 chr3 30493909 30493993 -129105790 + ID_B1 SINE B4 19 114 -110 7 817 26 50 0 0 chr3 30494358 30494398 -129105385 + GC_rich Low_complexity Low_complexity 1 40 0 7 817 29 28 0 0 chr3 30494445 30494481 -129105302 + GC_rich Low_complexity Low_complexity 1 36 0 7 817 198 0 0 0 chr3 30494840 30494862 -129104921 + (CA)n Simple_repeat Simple_repeat 2 23 0 7 817 440 223 0 46 chr3 30494985 30495093 -129104690 + B1_Mur2 SINE Alu 4 106 -43 7 817 259 222 63 0 chr3 30495121 30495184 -129104599 + B1F1 SINE Alu 13 79 -70 7 817 205 156 0 0 chr3 30495614 30495646 -129104137 + (CAAA)n Simple_repeat Simple_repeat 4 35 0 7 817 372 284 76 17 chr3 30496425 30496543 -129103240 + PB1 SINE Alu 1 125 -2 7 817 285 280 53 0 chr3 30496555 30496630 -129103153 + ID4 SINE ID 4 82 -1 7 817 309 51 0 0 chr3 30497748 30497787 -129101996 + (TTA)n Simple_repeat Simple_repeat 2 40 0 7 817 263 226 0 0 chr3 30497793 30497846 -129101937 - B1F1 SINE Alu -2 147 95 7 817 508 185 86 8 chr3 30497846 30497968 -129101815 + B1_Mur3 SINE Alu 13 142 -7 7 817 351 0 0 0 chr3 30497968 30498007 -129101776 + (CAGA)n Simple_repeat Simple_repeat 4 42 0 7 817 206 95 0 23 chr3 30498425 30498468 -129101315 + (TTTTTG)n Simple_repeat Simple_repeat 2 43 0 7 817 246 155 63 15 chr3 30499289 30499375 -129100408 - B1F SINE Alu 0 120 28 7 817 492 99 0 0 chr3 30499416 30499487 -129100296 + (TC)n Simple_repeat Simple_repeat 2 72 0 7 817 681 0 0 0 chr3 30500191 30500264 -129099519 + tRNA-Val-GTY tRNA tRNA 1 73 -3 1 817 227 54 0 26 chr3 30502167 30502205 -129097578 + (TTTTTG)n Simple_repeat Simple_repeat 2 38 0 2 817 203 0 37 0 chr3 30502818 30502845 -129096938 + (CA)n Simple_repeat Simple_repeat 2 29 0 3 817 608 119 0 18 chr3 30502916 30503027 -129096756 + B1_Mus1 SINE Alu 40 148 0 4 817 652 268 118 15 chr3 30503428 30503569 -129096214 + B4A SINE B4 2 172 -120 5 817 207 0 0 0 chr3 30503569 30503592 -129096191 + (CAGC)n Simple_repeat Simple_repeat 3 25 0 6 817 652 268 118 15 chr3 30503592 30503712 -129096071 + B4A SINE B4 173 290 -2 5 817 394 232 11 0 chr3 30503991 30504086 -129095697 + B1_Mur3 SINE Alu 2 97 -52 7 817 218 302 67 34 chr3 30504136 30504225 -129095558 + MIRb SINE MIR 106 197 -71 8 817 296 257 230 0 chr3 30504724 30504837 -129094946 - B1F SINE Alu 0 149 11 9 817 23 0 0 0 chr3 30505183 30505206 -129094577 + AT_rich Low_complexity Low_complexity 1 23 0 1 817 563 229 64 7 chr3 30505206 30505347 -129094436 + B1_Mur1 SINE Alu 1 149 0 1 817 235 256 20 122 chr3 30505351 30505449 -129094334 - RSINE1 SINE B4 0 165 78 1 817 182 105 0 26 chr3 30505879 30505918 -129093865 + (TTTTTG)n Simple_repeat Simple_repeat 1 38 0 1 817 264 299 65 0 chr3 30506826 30506903 -129092880 - ID4_ SINE ID 0 83 2 1 817 28 0 0 0 chr3 30506993 30507021 -129092762 + AT_rich Low_complexity Low_complexity 1 28 0 1 817 794 72 0 18 chr3 30507021 30507134 -129092649 - B1_Mus2 SINE Alu 0 147 37 1 817 335 167 0 43 chr3 30507269 30507338 -129092445 - ID4 SINE ID -11 72 7 1 817 327 298 26 9 chr3 30507353 30507468 -129092315 - PB1D10 SINE Alu 0 117 1 1 817 280 268 239 6 chr3 30508182 30508362 -129091421 + MTE-int LTR MaLR 1204 1425 -155 1 817 687 181 0 0 chr3 30508371 30508498 -129091285 - B1_Mur3 SINE Alu -2 147 21 2 817 291 235 95 87 chr3 30508393 30508519 -129091264 - MT2B LTR ERVL -320 281 155 2 817 244 294 139 52 chr3 30508896 30509068 -129090715 - MTE-int LTR MaLR -764 816 630 2 817 417 265 39 0 chr3 30509082 30509184 -129090599 - PB1D10 SINE Alu 0 117 12 2 817 345 282 0 0 chr3 30509209 30509287 -129090496 - ID4 SINE ID -4 79 2 2 817 479 345 106 7 chr3 30509343 30509626 -129090157 - MTE-int LTR MaLR -1070 510 200 2 817 325 293 142 7 chr3 30509732 30509873 -129089910 - MTE-int LTR MaLR -1380 200 41 2 817 270 225 0 66 chr3 30512085 30512161 -129087622 - ID4_ SINE ID -10 73 3 2 817 230 357 47 54 chr3 30512662 30512810 -129086973 + B4A SINE B4 78 224 -68 2 817 471 258 37 15 chr3 30512677 30512811 -129086972 + B1F SINE Alu 12 148 -1 2 817 291 323 70 16 chr3 30512839 30512968 -129086815 + RSINE1 SINE B4 30 165 0 2 817 26 0 0 0 chr3 30513114 30513140 -129086643 + AT_rich Low_complexity Low_complexity 1 26 0 2 817 2826 12 61 12 chr3 30513149 30513479 -129086304 - ORR1A0 LTR MaLR 0 346 1 3 817 863 198 18 6 chr3 30513481 30513649 -129086134 + B3 SINE B2 1 170 -46 3 817 369 0 0 0 chr3 30513662 30513703 -129086080 + (TAA)n Simple_repeat Simple_repeat 2 42 0 3 817 231 287 83 65 chr3 30513745 30513853 -129085930 + PB1D10 SINE Alu 7 116 -1 3 817 315 0 0 0 chr3 30514225 30514260 -129085523 + (TG)n Simple_repeat Simple_repeat 1 35 0 3 817 279 194 15 10 chr3 30514547 30514616 -129085167 + B1F1 SINE Alu 5 74 -43 3 817 23 0 0 0 chr3 30518268 30518291 -129081492 + AT_rich Low_complexity Low_complexity 1 23 0 3 817 314 285 50 65 chr3 30518850 30518989 -129080794 - B1F1 SINE Alu -1 148 12 3 817 434 195 41 25 chr3 30519812 30519933 -129079850 - Lx7 LINE L1 -15 7681 7559 3 817 4874 227 92 29 chr3 30519931 30520580 -129079203 - Lx7 LINE L1 -375 7321 6648 3 817 1148 178 67 0 chr3 30520580 30520788 -129078995 - URR1B DNA MER1_type 0 225 4 3 817 4874 227 92 29 chr3 30520788 30521361 -129078422 - Lx7 LINE L1 -1049 6647 6021 3 817 1536 53 5 0 chr3 30521361 30521549 -129078234 + B2_Mm1a SINE B2 1 189 -4 4 817 4874 227 92 29 chr3 30521549 30521673 -129078110 - Lx7 LINE L1 -1676 6020 5890 3 817 396 0 0 0 chr3 30521717 30521761 -129078022 + (TG)n Simple_repeat Simple_repeat 1 44 0 4 817 230 81 27 0 chr3 30521761 30521798 -129077985 + (GA)n Simple_repeat Simple_repeat 2 39 0 4 817 1062 198 92 8 chr3 30521843 30522092 -129077691 - MT2A LTR ERVL -243 290 21 4 817 1337 202 69 10 chr3 30522234 30522568 -129077215 - Lx7 LINE L1 -222 5658 5319 3 817 22 70 0 0 chr3 30523993 30524036 -129075747 + AT_rich Low_complexity Low_complexity 1 43 0 4 817 253 233 53 27 chr3 30524258 30524333 -129075450 + PB1D10 SINE Alu 9 85 -32 4 817 6208 72 57 5 chr3 30524465 30525931 -129073852 + L1VL2 LINE L1 293 1845 -1770 4 817 294 257 0 0 chr3 30526054 30526128 -129073655 - PB1D10 SINE Alu -2 115 42 4 817 21 57 0 0 chr3 30526805 30526840 -129072943 + AT_rich Low_complexity Low_complexity 1 35 0 4 817 232 219 78 0 chr3 30527111 30527175 -129072608 + L1M2 LINE L1 2745 2813 -3330 4 817 3711 197 143 12 chr3 30527567 30528575 -129071208 + L1_Mur3 LINE L1 2670 3809 -2071 5 817 575 12 48 0 chr3 30529206 30529290 -129070493 + (TC)n Simple_repeat Simple_repeat 1 88 0 5 817 418 209 0 21 chr3 30529290 30529383 -129070400 + B1_Mur4 SINE Alu 60 150 0 5 817 930 114 31 12 chr3 30529410 30529570 -129070213 - B2_Mm2 SINE B2 -32 163 1 5 817 1181 126 21 37 chr3 30529628 30529817 -129069966 - B2_Mm1t SINE B2 -6 187 2 5 817 805 225 59 20 chr3 30529860 30530064 -129069719 + B3 SINE B2 1 212 -4 5 817 281 284 57 0 chr3 30530945 30531033 -129068750 - PB1D9 SINE Alu -10 110 18 5 817 397 358 49 0 chr3 30531112 30531274 -129068509 + B4A SINE B4 48 217 -75 5 817 626 193 0 0 chr3 30532150 30532269 -129067514 - B3 SINE B2 -97 119 1 5 817 311 113 19 0 chr3 30532649 30532702 -129067081 + (TATG)n Simple_repeat Simple_repeat 3 56 0 5 817 515 250 26 45 chr3 30532721 30532876 -129066907 - RSINE1 SINE B4 -10 155 4 6 817 764 30 0 29 chr3 30532885 30532989 -129066794 - B1_Mm SINE Alu 0 147 47 6 817 237 200 0 20 chr3 30532946 30532997 -129066786 - 4.5SRNA scRNA scRNA -8 86 37 6 817 451 231 43 0 chr3 30533866 30533983 -129065800 - Lx6 LINE L1 -26 7434 7313 6 817 1048 182 19 32 chr3 30534663 30534879 -129064904 - B3 SINE B2 -3 213 1 6 817 334 306 46 9 chr3 30534971 30535080 -129064703 + PB1D10 SINE Alu 2 114 -3 6 817 757 94 0 0 chr3 30535494 30535600 -129064183 + B2_Mm2 SINE B2 2 107 -88 6 817 216 0 0 0 chr3 30535604 30535628 -129064155 + (CAA)n Simple_repeat Simple_repeat 2 25 0 6 817 265 227 321 18 chr3 30535706 30535818 -129063965 - L1MB5 LINE L1 -8 6166 6021 6 817 384 103 0 0 chr3 30535818 30535876 -129063907 + (TG)n Simple_repeat Simple_repeat 2 59 0 6 817 357 234 0 0 chr3 30535884 30535948 -129063835 - ID4 SINE ID -14 69 6 7 817 21 0 0 0 chr3 30535954 30535975 -129063808 + AT_rich Low_complexity Low_complexity 1 21 0 7 817 342 133 228 21 chr3 30535975 30536116 -129063667 + MTB_Mm LTR MaLR 193 421 0 7 817 267 292 111 11 chr3 30536120 30536210 -129063573 + RSINE1 SINE B4 67 165 0 7 817 584 238 273 18 chr3 30536289 30536516 -129063267 + B4A SINE B4 8 292 0 7 817 434 269 122 23 chr3 30536553 30536816 -129062967 + L1_Mur3 LINE L1 3118 3406 -2474 7 817 491 209 8 57 chr3 30537019 30537141 -129062642 + B1_Mur3 SINE Alu 2 117 -32 7 817 365 216 186 31 chr3 30537193 30537253 -129062530 + L1MB8 LINE L1 4849 4917 -1229 7 817 6324 34 0 1 chr3 30537253 30537989 -129061794 - L1Md_T LINE L1 0 6582 5848 7 817 365 216 186 31 chr3 30537989 30538057 -129061726 + L1MB8 LINE L1 4918 4997 -1149 7 817 440 180 202 8 chr3 30538093 30538222 -129061561 + L1MB8 LINE L1 5136 5289 -857 7 817 232 343 0 14 chr3 30538247 30538318 -129061465 + AluG_3 SINE Alu 152 221 -90 7 817 1073 238 69 36 chr3 30538539 30538824 -129060959 + L1MB8 LINE L1 5532 5836 -342 7 817 770 217 122 21 chr3 30538824 30539012 -129060771 + B3 SINE B2 1 207 -9 8 817 1073 238 69 36 chr3 30539012 30539058 -129060725 + L1MB8 LINE L1 5837 5874 -304 7 817 628 313 23 19 chr3 30539175 30539390 -129060393 + B4A SINE B4 1 216 -76 8 817 1154 28 20 34 chr3 30539462 30539596 -129060187 + B1_Mus2 SINE Alu 1 137 -10 8 817 225 0 0 0 chr3 30539596 30539621 -129060162 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 8 817 1154 28 20 34 chr3 30539621 30539633 -129060150 + B1_Mus2 SINE Alu 138 145 -2 8 102 916 123 29 14 chr3 30539674 30539814 -129059969 - B1_Mur1 SINE Alu -6 143 2 8 818 510 275 136 9 chr3 30539982 30540195 -129059588 - MTEa-int LTR MaLR -79 1501 1262 8 818 252 0 0 0 chr3 30540221 30540249 -129059534 + (TG)n Simple_repeat Simple_repeat 2 29 0 8 818 534 276 20 14 chr3 30540264 30540411 -129059372 - RSINE1 SINE B4 -7 158 11 8 818 568 299 67 33 chr3 30540409 30540564 -129059219 - MTEa-int LTR MaLR -1375 205 41 8 818 354 23 0 0 chr3 30540564 30540607 -129059176 + (TTTTG)n Simple_repeat Simple_repeat 4 46 0 8 818 568 299 67 33 chr3 30540607 30540631 -129059152 - MTEa-int LTR MaLR -1540 40 20 8 818 386 285 10 82 chr3 30540642 30540837 -129058946 - MTEa LTR MaLR 0 379 199 8 818 316 260 101 16 chr3 30540846 30540975 -129058808 - B1F SINE Alu -8 141 2 8 818 504 203 127 8 chr3 30541068 30541202 -129058581 + B3A SINE B2 1 150 -48 9 818 706 188 158 30 chr3 30541229 30541394 -129058389 + B3 SINE B2 3 188 -28 9 818 432 37 0 0 chr3 30541394 30541448 -129058335 + (CA)n Simple_repeat Simple_repeat 2 55 0 9 818 255 61 0 0 chr3 30541515 30541548 -129058235 + (TAAA)n Simple_repeat Simple_repeat 1 33 0 9 818 246 62 0 0 chr3 30542524 30542556 -129057227 + (GGA)n Simple_repeat Simple_repeat 2 33 0 9 818 784 194 0 0 chr3 30542742 30542881 -129056902 + B1_Mur4 SINE Alu 11 149 -1 9 818 230 136 0 22 chr3 30542905 30542950 -129056833 + GA-rich Low_complexity Low_complexity 4 47 0 9 818 848 268 36 101 chr3 30542961 30543318 -129056465 - MTE2a LTR MaLR -43 336 3 9 818 1668 173 107 6 chr3 30543346 30543712 -129056071 - MTD LTR MaLR -12 407 5 9 818 863 27 0 0 chr3 30543906 30544017 -129055766 - B1_Mus2 SINE Alu 0 147 37 9 818 571 269 89 48 chr3 30544779 30545048 -129054735 - B4A SINE B4 -12 280 1 1 818 415 282 0 17 chr3 30545154 30545273 -129054510 - PB1D10 SINE Alu 0 117 1 1 818 21 57 0 0 chr3 30545586 30545621 -129054162 + AT_rich Low_complexity Low_complexity 1 35 0 1 818 206 105 0 26 chr3 30547671 30547710 -129052073 + (AGGGGG)n Simple_repeat Simple_repeat 4 41 0 1 818 23 54 0 0 chr3 30548101 30548138 -129051645 + AT_rich Low_complexity Low_complexity 1 37 0 1 818 690 220 7 14 chr3 30548248 30548391 -129051392 - B1_Mur2 SINE Alu 0 149 8 1 818 562 212 7 14 chr3 30548440 30548579 -129051204 - B3A SINE B2 -36 162 25 1 818 180 0 0 0 chr3 30549952 30549972 -129049811 + (CAAAA)n Simple_repeat Simple_repeat 3 22 0 1 818 580 262 0 79 chr3 30550364 30550441 -129049342 + RSINE1 SINE B4 2 74 -91 1 818 198 0 0 0 chr3 30550441 30550463 -129049320 + (TGGGGG)n Simple_repeat Simple_repeat 4 25 0 1 818 580 262 0 79 chr3 30550463 30550563 -129049220 + RSINE1 SINE B4 75 165 0 1 818 348 94 0 0 chr3 30550958 30551011 -129048772 + (TG)n Simple_repeat Simple_repeat 2 54 0 1 818 906 237 122 50 chr3 30551124 30551502 -129048281 - MTD LTR MaLR -14 405 1 1 818 21 0 0 0 chr3 30551955 30551976 -129047807 + AT_rich Low_complexity Low_complexity 1 21 0 1 818 374 214 59 30 chr3 30552102 30552203 -129047580 + ID_B1 SINE B4 121 224 0 1 818 1333 75 17 6 chr3 30552823 30552997 -129046786 - B2_Mm2 SINE B2 -19 176 1 1 818 432 0 0 0 chr3 30554141 30554189 -129045594 + (TG)n Simple_repeat Simple_repeat 2 49 0 1 818 289 230 69 0 chr3 30554403 30554490 -129045293 - HY4 scRNA scRNA 0 93 1 1 818 207 205 0 0 chr3 30554782 30554821 -129044962 + (CA)n Simple_repeat Simple_repeat 1 39 0 1 818 243 251 56 107 chr3 30554984 30555090 -129044693 - Lx6 LINE L1 -2 7471 7373 1 818 2355 140 77 3 chr3 30555090 30555478 -129044305 - MTC LTR MaLR -2 419 3 1 818 243 251 56 107 chr3 30555478 30555549 -129044234 - Lx6 LINE L1 -101 7372 7303 1 818 1591 252 150 6 chr3 30555575 30556047 -129043736 - Lx6 LINE L1 -341 7132 6593 1 818 2123 98 6 16 chr3 30556106 30556428 -129043355 + ORR1A2 LTR MaLR 1 319 -8 1 818 23 0 0 0 chr3 30556450 30556473 -129043310 + AT_rich Low_complexity Low_complexity 1 23 0 1 818 452 275 7 58 chr3 30557187 30557326 -129042457 - MTEb LTR MaLR 0 379 248 1 818 1073 91 60 5 chr3 30557417 30557616 -129042167 - RLTR10A LTR ERVK -65 346 137 1 818 18765 160 35 61 chr3 30559123 30563017 -129036766 - Lx6 LINE L1 -902 6148 2395 1 818 1280 94 33 0 chr3 30563017 30563197 -129036586 - B2_Mm2 SINE B2 -9 186 1 1 818 18765 158 30 63 chr3 30563197 30563473 -129036310 - Lx6 LINE L1 -3486 2394 2109 1 818 342 0 0 0 chr3 30563500 30563538 -129036245 + (TG)n Simple_repeat Simple_repeat 2 39 0 1 818 1813 201 27 8 chr3 30563550 30563951 -129035832 - Lx6 LINE L1 -6428 1300 892 1 818 572 248 50 0 chr3 30564197 30564338 -129035445 - Lx8 LINE L1 -197 7276 7129 1 818 1963 275 83 68 chr3 30564341 30565383 -129034400 - MYSERV-int LTR ERVK -1427 5123 4066 1 818 1642 229 42 46 chr3 30565391 30565909 -129033874 - RLTR20A LTR ERVK 0 541 26 1 818 7137 121 27 30 chr3 30565924 30567182 -129032601 - MYSERV16_I-int LTR ERVK -6 2320 1067 1 818 4849 170 47 45 chr3 30567190 30568261 -129031522 - MYSERV16_I-int LTR ERVK -1487 1355 1 1 818 7950 44 26 2 chr3 30568272 30569457 -129030326 - L1Md_F2 LINE L1 -14 6568 5364 1 818 1480 248 22 36 chr3 30570326 30570773 -129029010 - RLTR20C LTR ERVK 0 534 94 1 818 571 160 9 0 chr3 30570789 30570895 -129028888 - MYSERV-int LTR ERVK -3112 3438 3332 1 818 300 238 45 45 chr3 30570896 30570984 -129028799 - B4A SINE B4 -203 89 2 1 818 315 281 96 53 chr3 30571331 30571519 -129028264 + L1MC5 LINE L1 7694 7889 -72 1 818 518 281 32 48 chr3 30571594 30571781 -129028002 - L1MD2 LINE L1 -105 6254 6071 1 818 445 295 52 15 chr3 30573099 30573233 -129026550 - RSINE1 SINE B4 0 165 27 1 818 284 244 149 8 chr3 30573494 30573612 -129026171 - L1MD2 LINE L1 -464 5778 5635 1 818 560 221 49 42 chr3 30573722 30573864 -129025919 - RSINE1 SINE B4 -17 148 6 1 818 7037 71 9 7 chr3 30574075 30574993 -129024790 - L1_Mus4 LINE L1 0 6636 5717 1 818 2003 118 13 0 chr3 30575248 30575561 -129024222 - ORR1A2 LTR MaLR -8 319 3 1 818 698 268 102 23 chr3 30575584 30575848 -129023935 + B4A SINE B4 4 288 -4 1 818 2063 185 30 223 chr3 30575918 30575985 -129023798 + RMER19C LTR ERVK 1 67 -544 1 818 1112 75 0 45 chr3 30575985 30576139 -129023644 - B1_Mus1 SINE Alu 0 148 2 1 818 2063 185 30 223 chr3 30576139 30576828 -129022955 + RMER19C LTR ERVK 68 611 0 1 818 919 270 24 27 chr3 30577086 30577110 -129022673 - B4 SINE B4 0 292 270 1 818 279 0 0 0 chr3 30577110 30577141 -129022642 + (TG)n Simple_repeat Simple_repeat 2 32 0 1 818 919 270 24 27 chr3 30577141 30577409 -129022374 - B4 SINE B4 -23 269 1 1 818 1261 34 0 7 chr3 30577482 30577630 -129022153 - B1_Mm SINE Alu 0 147 1 1 818 1089 167 28 14 chr3 30577630 30577843 -129021940 - URR1A DNA MER1_type -10 216 1 1 818 415 250 0 0 chr3 30578726 30578806 -129020977 - ID4_ SINE ID -2 81 2 1 818 2379 104 3 0 chr3 30578906 30579232 -129020551 + ORR1A2 LTR MaLR 1 327 0 1 818 1774 162 77 29 chr3 30580422 30580771 -129019012 + ORR1D1 LTR MaLR 5 370 -4 1 818 1503 72 0 15 chr3 30580771 30580969 -129018814 + B2_Mm2 SINE B2 1 195 0 1 818 1212 98 48 11 chr3 30581586 30581772 -129018011 - B2_Mm1t SINE B2 0 193 1 1 818 1227 281 44 79 chr3 30582541 30583113 -129016670 + MER68 LTR ERVL 5 556 -7 1 818 295 295 115 8 chr3 30583297 30583427 -129016356 - Tigger12c DNA MER2_type -526 208 65 1 818 466 167 30 40 chr3 30583481 30583581 -129016202 + ID_B1 SINE B4 126 224 0 1 818 392 224 102 0 chr3 30584209 30584307 -129015476 + PB1 SINE Alu 18 125 -2 1 818 1306 237 60 58 chr3 30584337 30584785 -129014998 - RMER4A LTR ERVK -17 449 1 1 818 3418 30 0 8 chr3 30587297 30587696 -129012087 - MTA_Mm LTR MaLR 0 396 1 1 818 231 254 0 16 chr3 30587779 30587843 -129011940 + BC1_Mm scRNA scRNA 35 97 -55 1 818 1045 199 73 67 chr3 30588363 30588707 -129011076 + RLTR15 LTR ERVK 6 351 -8 1 818 189 0 0 0 chr3 30589152 30589173 -129010610 + (TG)n Simple_repeat Simple_repeat 2 22 0 1 818 190 207 35 0 chr3 30589646 30589704 -129010079 + (TA)n Simple_repeat Simple_repeat 2 61 0 1 818 897 273 39 68 chr3 30589729 30590008 -129009775 - B4 SINE B4 -21 271 1 1 818 234 116 0 0 chr3 30590463 30590506 -129009277 + (CAAAAA)n Simple_repeat Simple_repeat 2 44 0 1 818 448 202 209 9 chr3 30590786 30590901 -129008882 - B1_Mur1 SINE Alu -9 140 3 1 818 373 287 18 27 chr3 30591619 30591730 -129008053 + RSINE1 SINE B4 1 110 -55 1 818 486 240 8 30 chr3 30591711 30591844 -129007939 + ORR1D2 LTR MaLR 16 145 -225 1 818 28 29 0 0 chr3 30591955 30591990 -129007793 + AT_rich Low_complexity Low_complexity 1 35 0 1 818 272 322 0 22 chr3 30591991 30592080 -129007703 + MLT1A1 LTR MaLR 1 87 -321 1 818 1037 196 28 14 chr3 30592080 30592292 -129007491 + B3 SINE B2 2 216 0 1 818 853 262 83 18 chr3 30592363 30592633 -129007150 + ORR1D2 LTR MaLR 1 288 -82 1 818 4412 48 3 5 chr3 30592633 30593216 -129006567 + LTRIS_Mus LTR ERV1 1 582 -5 1 818 374 256 11 11 chr3 30593203 30593294 -129006489 + ORR1D2 LTR MaLR 277 367 -3 1 818 264 308 86 59 chr3 30593294 30593437 -129006346 + MLT1A1 LTR MaLR 147 293 -81 1 818 225 0 0 0 chr3 30594024 30594049 -129005734 + (TTTTG)n Simple_repeat Simple_repeat 3 27 0 1 818 343 237 144 0 chr3 30594066 30594163 -129005620 - ID_B1 SINE B4 -18 206 96 1 818 532 264 35 0 chr3 30595063 30595207 -129004576 + B1F1 SINE Alu 1 149 0 1 818 27 29 0 0 chr3 30595884 30595918 -129003865 + AT_rich Low_complexity Low_complexity 1 34 0 1 818 219 69 0 0 chr3 30595932 30595961 -129003822 + (TTTTG)n Simple_repeat Simple_repeat 1 29 0 1 818 801 149 6 17 chr3 30596008 30596185 -129003598 + CT-rich Low_complexity Low_complexity 4 178 0 1 818 314 61 0 20 chr3 30596198 30596248 -129003535 + (TCTG)n Simple_repeat Simple_repeat 2 50 0 1 818 247 164 15 103 chr3 30597763 30597831 -129001952 - B1_Mus1 SINE Alu -83 65 4 1 818 1293 148 4 9 chr3 30597943 30598168 -129001615 - URR1B DNA MER1_type -1 224 1 1 818 417 231 111 0 chr3 30598250 30598358 -129001425 - PB1D9 SINE Alu 0 120 1 1 818 3988 57 10 0 chr3 30598950 30599445 -129000338 + L1_Mus4 LINE L1 6134 6633 -3 1 818 444 309 41 18 chr3 30600003 30600174 -128999609 + L1MB1 LINE L1 5812 5986 -182 1 818 251 207 17 0 chr3 30600369 30600427 -128999356 - Lx7 LINE L1 -2005 5691 5633 1 818 506 295 12 0 chr3 30600475 30600641 -128999142 - Lx7 LINE L1 -236 5644 5477 1 818 180 241 0 0 chr3 30600651 30600730 -128999053 + (CCCA)n Simple_repeat Simple_repeat 3 81 0 1 818 404 258 93 54 chr3 30600730 30600935 -128998848 - L1_Rod LINE L1 -392 5455 5243 1 818 448 238 152 0 chr3 30600945 30601096 -128998687 + Lx8 LINE L1 5752 5925 -1548 1 818 5265 141 25 51 chr3 30601131 30602064 -128997719 + RMER13B LTR ERVK 1 908 0 1 818 468 51 0 0 chr3 30602080 30602139 -128997644 + (GAAA)n Simple_repeat Simple_repeat 2 60 0 1 818 225 272 127 42 chr3 30602262 30602404 -128997379 - MLT1B LTR MaLR -215 175 22 1 818 342 273 110 10 chr3 30602462 30602562 -128997221 + B3A SINE B2 73 182 -16 1 818 231 188 0 0 chr3 30602562 30602610 -128997173 + (CA)n Simple_repeat Simple_repeat 1 48 0 1 818 189 0 0 0 chr3 30602684 30602705 -128997078 + (T)n Simple_repeat Simple_repeat 1 21 0 1 818 472 193 48 12 chr3 30603007 30603175 -128996608 + GA-rich Low_complexity Low_complexity 2 175 0 1 818 908 141 11 11 chr3 30603157 30603336 -128996447 + G-rich Low_complexity Low_complexity 2 180 0 1 818 638 0 39 0 chr3 30603336 30603413 -128996370 + (GAGAA)n Simple_repeat Simple_repeat 5 84 0 1 818 663 287 237 24 chr3 30603492 30603591 -128996192 - RLTR20C LTR ERVK 0 563 467 1 818 456 19 0 0 chr3 30603591 30603644 -128996139 + (CA)n Simple_repeat Simple_repeat 1 53 0 1 818 921 212 78 67 chr3 30603644 30604008 -128995775 - RLTR20C LTR ERVK -97 466 1 1 818 352 299 119 43 chr3 30604084 30604294 -128995489 + L1M4 LINE L1 4949 5174 -972 1 818 17603 131 39 13 chr3 30604333 30607094 -128992689 - MERVL_2A-int LTR ERVL -1810 3951 1119 1 818 664 268 85 51 chr3 30607143 30607438 -128992345 - MTEa LTR MaLR -74 305 1 1 818 205 312 97 0 chr3 30608180 30608273 -128991510 + MIRc SINE MIR 50 151 -117 2 818 295 293 127 89 chr3 30608770 30609050 -128990733 + MLT1B LTR MaLR 1 322 -68 2 818 483 292 44 0 chr3 30609050 30609187 -128990596 - B1F2 SINE Alu -6 143 1 2 818 295 254 97 100 chr3 30609187 30609253 -128990530 + MLT1B LTR MaLR 308 371 -3 2 818 489 254 55 21 chr3 30609299 30609444 -128990339 + ID_B1 SINE B4 67 216 -8 2 818 330 319 17 8 chr3 30609664 30609781 -128990002 - LTR84b LTR ERVL -590 171 54 2 818 550 285 101 11 chr3 30610313 30610501 -128989282 + Lx8 LINE L1 7016 7220 -253 2 818 239 273 15 0 chr3 30610542 30610608 -128989175 + RMER15 LTR ERVL 405 471 -104 2 818 1518 129 19 131 chr3 30611149 30611216 -128988567 - ORR1B1 LTR MaLR 0 394 338 2 818 1403 60 37 27 chr3 30611216 30611403 -128988380 - B2_Mm2 SINE B2 -6 189 1 2 818 1518 129 19 131 chr3 30611403 30611655 -128988128 - ORR1B1 LTR MaLR -57 337 111 2 818 195 42 0 0 chr3 30611734 30611758 -128988025 + (A)n Simple_repeat Simple_repeat 1 24 0 2 818 200 252 45 19 chr3 30612870 30613024 -128986759 + (TGAG)n Simple_repeat Simple_repeat 2 159 0 2 818 235 304 53 71 chr3 30613143 30613313 -128986470 + RLTR25A LTR ERVK 937 1103 0 2 818 476 90 0 24 chr3 30613313 30613390 -128986393 - ORR1B1 LTR MaLR -297 97 1 2 818 1704 225 53 15 chr3 30613459 30613856 -128985927 + MTD LTR MaLR 3 414 -5 2 818 965 142 14 0 chr3 30614017 30614165 -128985618 + B1_Mur4 SINE Alu 1 150 0 2 818 5953 229 50 17 chr3 30614249 30615655 -128984128 - Lx7 LINE L1 0 7696 6245 2 818 1501 250 53 14 chr3 30615671 30616089 -128983694 + Lx8 LINE L1 7035 7468 -5 2 818 1360 111 0 16 chr3 30616156 30616348 -128983435 - B2_Mm2 SINE B2 -4 191 3 2 818 880 193 15 98 chr3 30616722 30616986 -128982797 + RLTR11B LTR ERVK 1 242 -211 2 818 246 291 0 0 chr3 30616976 30617062 -128982721 + RLTR11B LTR ERVK 201 286 -167 2 818 267 307 31 88 chr3 30617066 30617259 -128982524 + RLTR11B LTR ERVK 246 427 -26 2 818 295 340 0 20 chr3 30618016 30618118 -128981665 - MLT1I LTR MaLR -200 211 112 2 818 2441 104 3 3 chr3 30618174 30618501 -128981282 + ORR1A2 LTR MaLR 1 327 0 2 818 1086 173 99 133 chr3 30618934 30619341 -128980442 + MT2A LTR ERVL 1 527 -57 2 818 285 51 0 0 chr3 30619351 30619390 -128980393 + (CATA)n Simple_repeat Simple_repeat 2 40 0 2 818 405 105 35 0 chr3 30619427 30619513 -128980270 + (TAGA)n Simple_repeat Simple_repeat 4 92 0 2 818 4307 57 16 34 chr3 30619631 30620196 -128979587 - L1_Mus2 LINE L1 0 6566 6012 2 818 401 274 115 0 chr3 30620295 30620452 -128979331 + L1MA4 LINE L1 5777 5951 -349 2 818 2714 112 58 0 chr3 30620518 30620918 -128978865 - RMER1A Other Other -10 1020 598 2 818 1529 122 36 22 chr3 30620918 30621194 -128978589 - RLTR17 LTR ERVK -412 280 1 2 818 600 238 8 15 chr3 30621205 30621337 -128978446 + RMER1A Other Other 1 131 -899 2 818 987 214 48 19 chr3 30621486 30621696 -128978087 - B3 SINE B2 0 216 1 2 818 797 207 0 52 chr3 30621859 30622032 -128977751 - RSINE1 SINE B4 0 165 2 2 818 429 20 0 0 chr3 30622638 30622688 -128977095 + (TG)n Simple_repeat Simple_repeat 1 50 0 2 818 342 269 0 25 chr3 30622704 30622784 -128976999 - ID4_ SINE ID -4 79 2 2 818 1050 105 134 6 chr3 30623888 30624060 -128975723 - B2_Mm2 SINE B2 0 195 2 2 818 372 331 29 62 chr3 30624185 30624491 -128975292 + L1MC5 LINE L1 7281 7576 -385 2 818 593 235 26 13 chr3 30624515 30624666 -128975117 + B3A SINE B2 1 153 -45 2 818 1569 87 5 14 chr3 30624747 30624969 -128974814 + L1Md_F2 LINE L1 6360 6579 -3 2 818 240 298 23 31 chr3 30625098 30625226 -128974557 + L1MC5 LINE L1 7722 7848 -113 2 818 234 0 0 0 chr3 30625321 30625347 -128974436 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 2 818 1129 320 73 2 chr3 30625349 30625884 -128973899 + L1MA5A LINE L1 5317 5889 -408 2 818 507 207 45 58 chr3 30626312 30626466 -128973317 + RSINE1 SINE B4 11 162 -3 2 818 1097 128 0 6 chr3 30626658 30626839 -128972944 + (GAA)n Simple_repeat Simple_repeat 1 180 0 2 818 237 296 45 0 chr3 30626840 30626928 -128972855 - B4A SINE B4 -49 243 152 2 818 439 294 134 22 chr3 30627053 30627321 -128972462 - MLT1C LTR MaLR -16 451 154 2 818 752 229 44 83 chr3 30627344 30627598 -128972185 - MTE2a LTR MaLR -5 416 135 2 818 323 216 319 0 chr3 30627609 30627725 -128972058 - RLTR18B LTR ERVK 0 512 360 2 818 502 273 35 41 chr3 30627741 30627913 -128971870 - MTE2a LTR MaLR -248 171 1 2 818 1148 172 160 0 chr3 30629273 30629529 -128970254 - RLTR18 LTR ERVK -315 301 5 2 818 590 13 13 0 chr3 30629589 30629665 -128970118 + L1Md_T LINE L1 6504 6580 -2 2 818 450 286 26 37 chr3 30629706 30629814 -128969969 + MTEa LTR MaLR 193 303 -76 2 818 6311 66 33 16 chr3 30629814 30630667 -128969116 - L1_Mus3 LINE L1 0 6638 5772 2 818 450 286 26 37 chr3 30630667 30630747 -128969036 + MTEa LTR MaLR 304 379 0 2 818 743 253 0 6 chr3 30630876 30631039 -128968744 - RSINE1 SINE B4 -3 162 1 2 818 204 111 0 0 chr3 30631194 30631230 -128968553 + (A)n Simple_repeat Simple_repeat 1 36 0 2 818 462 47 302 0 chr3 30631235 30631321 -128968462 + BC1_Mm scRNA scRNA 1 112 -40 2 818 514 270 105 39 chr3 30632948 30633206 -128966577 + L1MC1 LINE L1 6030 6304 -29 2 818 2993 91 7 5 chr3 30633711 30634131 -128965652 + BGLII LTR ERVK 1 421 0 2 818 1997 114 15 47 chr3 30634741 30635081 -128964702 + ORR1A4 LTR MaLR 1 329 0 2 818 1278 137 30 22 chr3 30635173 30635404 -128964379 - RMER1A Other Other -2 1028 796 2 818 773 234 91 22 chr3 30635403 30635717 -128964066 + L1MB3 LINE L1 4914 5261 -882 2 818 842 294 162 28 chr3 30635838 30636518 -128963265 + L1MB3 LINE L1 5412 6182 -1 2 818 216 0 0 0 chr3 30636866 30636890 -128962893 + (CA)n Simple_repeat Simple_repeat 2 25 0 2 818 255 207 0 49 chr3 30637642 30637703 -128962080 + ID4_ SINE ID 17 74 -9 2 818 384 138 0 0 chr3 30637719 30637784 -128961999 + (ATGGTG)n Simple_repeat Simple_repeat 2 66 0 2 818 2119 261 50 32 chr3 30637803 30638429 -128961354 + Lx8 LINE L1 6425 7061 -412 2 818 351 0 0 0 chr3 30638789 30638828 -128960955 + (CA)n Simple_repeat Simple_repeat 1 39 0 2 818 396 0 0 0 chr3 30639107 30639151 -128960632 + (TG)n Simple_repeat Simple_repeat 1 44 0 2 818 322 209 174 0 chr3 30639151 30639237 -128960546 - B3 SINE B2 -87 129 29 2 818 288 53 0 0 chr3 30640776 30640814 -128958969 + (TTTC)n Simple_repeat Simple_repeat 1 38 0 2 818 1203 97 0 0 chr3 30640832 30641008 -128958775 + (TTC)n Simple_repeat Simple_repeat 2 177 0 2 818 1002 47 70 0 chr3 30641033 30641162 -128958621 - B1_Mus1 SINE Alu -8 140 3 2 818 269 218 308 0 chr3 30641231 30641309 -128958474 - ID_B1 SINE B4 -114 110 9 2 818 2899 66 5 11 chr3 30642479 30642861 -128956922 + L1Md_F2 LINE L1 6203 6582 0 2 818 180 111 0 0 chr3 30642871 30642898 -128956885 + (A)n Simple_repeat Simple_repeat 1 27 0 2 818 281 248 56 147 chr3 30642934 30643166 -128956617 + Lx7 LINE L1 7468 7678 -18 2 818 198 103 0 0 chr3 30643182 30643211 -128956572 + (GGA)n Simple_repeat Simple_repeat 2 30 0 2 818 820 249 40 25 chr3 30643214 30643416 -128956367 + B4 SINE B4 86 290 -2 2 818 392 171 36 0 chr3 30643423 30643534 -128956249 + (CA)n Simple_repeat Simple_repeat 1 115 0 2 818 3129 129 89 13 chr3 30643880 30644552 -128955231 + RMER6A LTR ERVK 1 756 0 2 818 227 357 24 0 chr3 30645924 30646008 -128953775 - Lx8 LINE L1 -167 7306 7221 2 818 432 246 26 9 chr3 30646045 30646160 -128953623 - PB1D10 SINE Alu 0 117 1 2 818 821 241 135 11 chr3 30646858 30647118 -128952665 + B4A SINE B4 1 292 0 2 818 485 237 25 0 chr3 30647869 30647987 -128951796 + L1MC2 LINE L1 6031 6151 -193 2 818 246 253 100 33 chr3 30648032 30648122 -128951661 + L1MC2 LINE L1 6234 6329 -15 2 818 217 250 35 18 chr3 30648226 30648283 -128951500 - RSINE1 SINE B4 -13 152 95 2 818 479 180 38 30 chr3 30648323 30648455 -128951328 + Lx6 LINE L1 7328 7460 0 2 818 1396 96 16 0 chr3 30649315 30649503 -128950280 - B2_Mm2 SINE B2 0 195 5 2 818 460 295 14 14 chr3 30649662 30649803 -128949980 + B4 SINE B4 27 167 -125 2 818 378 0 0 0 chr3 30649870 30649912 -128949871 + (CA)n Simple_repeat Simple_repeat 1 42 0 2 818 477 332 24 15 chr3 30650345 30650414 -128949369 - MLT1B LTR MaLR 0 390 324 2 818 784 189 27 198 chr3 30650414 30650486 -128949297 + B3 SINE B2 3 47 -169 2 818 1215 54 0 0 chr3 30650486 30650633 -128949150 - B1_Mus2 SINE Alu 0 147 1 2 818 784 189 27 198 chr3 30650633 30650818 -128948965 + B3 SINE B2 48 216 0 2 818 477 332 24 15 chr3 30650818 30650953 -128948830 - MLT1B LTR MaLR -67 323 184 2 818 281 266 0 60 chr3 30652406 30652490 -128947293 + ID4_ SINE ID 1 79 -4 2 818 182 200 67 0 chr3 30652511 30652556 -128947227 - L2 LINE L2 -503 2916 2869 2 818 461 269 96 11 chr3 30652572 30652760 -128947023 + L1MA7 LINE L1 6065 6268 -23 2 818 245 286 32 0 chr3 30652780 30652843 -128946940 - RSINE1 SINE B4 -99 66 2 2 818 453 36 0 0 chr3 30653126 30653181 -128946602 + (TC)n Simple_repeat Simple_repeat 1 55 0 2 818 1217 68 0 0 chr3 30653526 30653674 -128946109 + B1_Mus1 SINE Alu 1 148 0 2 818 395 300 112 52 chr3 30653708 30653958 -128945825 + B4A SINE B4 22 286 -6 2 818 600 288 7 0 chr3 30654715 30654854 -128944929 + RSINE1 SINE B4 13 152 -13 2 818 1113 0 22 0 chr3 30654868 30655005 -128944778 + (TAGA)n Simple_repeat Simple_repeat 3 142 0 2 818 864 251 14 5 chr3 30655828 30656040 -128943743 - B3 SINE B2 -2 214 1 2 818 22 35 0 0 chr3 30656192 30656221 -128943562 + AT_rich Low_complexity Low_complexity 1 29 0 2 818 21 0 0 0 chr3 30656245 30656266 -128943517 + AT_rich Low_complexity Low_complexity 1 21 0 2 818 227 181 43 108 chr3 30656436 30656529 -128943254 - MTD LTR MaLR -5 365 279 2 818 515 282 69 6 chr3 30656656 30656831 -128942952 - MTD LTR MaLR -216 203 18 2 818 720 35 0 0 chr3 30657744 30657831 -128941952 + (GA)n Simple_repeat Simple_repeat 2 88 0 3 818 298 344 72 35 chr3 30657834 30658130 -128941653 + B4 SINE B4 1 274 -18 3 818 584 246 0 0 chr3 30658140 30658258 -128941525 + RSINE1 SINE B4 32 149 -16 3 818 410 79 16 0 chr3 30658259 30658322 -128941461 + (CA)n Simple_repeat Simple_repeat 2 65 0 3 818 727 291 39 6 chr3 30658325 30658505 -128941278 + B4 SINE B4 84 269 -23 3 818 324 127 0 0 chr3 30658512 30658567 -128941216 + (CA)n Simple_repeat Simple_repeat 1 55 0 3 818 324 324 31 0 chr3 30658591 30658707 -128941076 + B1F1 SINE Alu 1 119 -1 3 818 421 248 8 81 chr3 30659217 30659340 -128940443 + PB1D10 SINE Alu 4 117 0 3 818 233 246 0 16 chr3 30659767 30659829 -128939954 + ID_B1 SINE B4 141 201 -23 3 818 222 179 40 40 chr3 30661223 30661322 -128938461 + (TATAA)n Simple_repeat Simple_repeat 4 102 0 3 818 664 293 74 108 chr3 30661442 30661886 -128937897 - MER63B DNA AcHobo 0 436 8 3 818 521 311 75 35 chr3 30662069 30662269 -128937514 + B4A SINE B4 13 220 -72 3 818 1105 243 0 5 chr3 30662492 30662707 -128937076 - B3 SINE B2 0 216 3 3 818 327 274 14 0 chr3 30662725 30662798 -128936985 + PB1D10 SINE Alu 7 80 -37 3 818 329 214 131 52 chr3 30662883 30663036 -128936747 - L1MD3 LINE L1 0 7995 7831 3 818 432 0 0 0 chr3 30663555 30663603 -128936180 + (TA)n Simple_repeat Simple_repeat 1 48 0 3 818 396 0 0 0 chr3 30664927 30664971 -128934812 + (CA)n Simple_repeat Simple_repeat 2 45 0 3 818 684 231 89 0 chr3 30666602 30666771 -128933012 - B3 SINE B2 -2 214 31 3 818 2016 171 44 14 chr3 30666852 30667219 -128932564 - ORR1C1 LTR MaLR 0 378 1 3 818 527 268 16 8 chr3 30667285 30667409 -128932374 - RSINE1 SINE B4 -28 137 13 3 818 289 320 9 46 chr3 30667631 30667739 -128932044 - PB1D10 SINE Alu -11 106 3 3 818 180 0 0 0 chr3 30668198 30668218 -128931565 + (A)n Simple_repeat Simple_repeat 1 20 0 3 818 256 278 0 0 chr3 30668394 30668448 -128931335 + ID4 SINE ID 2 55 -28 3 818 234 312 78 0 chr3 30668400 30668464 -128931319 + tRNA-Ala-GCY_ tRNA tRNA 2 70 -5 3 818 216 304 101 0 chr3 30668637 30668716 -128931067 - L2b LINE L2 -36 3339 3253 3 818 435 19 0 0 chr3 30668755 30668807 -128930976 + (TG)n Simple_repeat Simple_repeat 2 53 0 3 818 1375 262 78 51 chr3 30669907 30670394 -128929389 + RLTR11A LTR ERVK 1 500 -28 3 819 486 206 2 28 chr3 30670851 30670959 -128928824 + B1_Mur4 SINE Alu 1 104 -16 3 819 2675 176 66 16 chr3 30670962 30671506 -128928277 + Lx5 LINE L1 6480 7050 0 3 819 252 86 0 0 chr3 30671997 30672032 -128927751 + (GAA)n Simple_repeat Simple_repeat 3 37 0 3 819 284 272 48 9 chr3 30672517 30672628 -128927155 - ID4_ SINE ID -32 120 5 3 819 365 345 71 54 chr3 30673082 30673321 -128926462 + LTR33 LTR ERVL 20 262 -253 3 819 1338 233 78 30 chr3 30673941 30674402 -128925381 + Lx7 LINE L1 6866 7348 -348 3 819 204 40 0 0 chr3 30674468 30674493 -128925290 + (CAGA)n Simple_repeat Simple_repeat 2 26 0 3 819 29 47 0 0 chr3 30674587 30674630 -128925153 + AT_rich Low_complexity Low_complexity 1 43 0 3 819 214 250 0 0 chr3 30675390 30675438 -128924345 + GA-rich Low_complexity Low_complexity 1 48 0 3 819 285 320 62 93 chr3 30675439 30675632 -128924151 - ORR1E LTR MaLR -169 190 4 3 819 315 260 65 0 chr3 30675656 30675733 -128924050 - B1_Mus2 SINE Alu -15 132 51 3 819 218 253 39 39 chr3 30675745 30675823 -128923960 + B2_Mm1t SINE B2 2 79 -114 3 819 428 308 97 32 chr3 30675753 30676001 -128923782 + B4A SINE B4 11 274 -18 3 819 267 103 0 0 chr3 30676044 30676083 -128923700 + (CA)n Simple_repeat Simple_repeat 1 39 0 3 819 206 271 17 0 chr3 30676120 30676179 -128923604 + (TATATG)n Simple_repeat Simple_repeat 1 60 0 3 819 1307 67 49 22 chr3 30676233 30676417 -128923366 + B2_Mm2 SINE B2 1 189 -6 3 819 389 254 54 27 chr3 30676419 30676564 -128923219 - MER57D LTR ERV1 -37 374 226 3 819 28 0 0 0 chr3 30677896 30677924 -128921859 + AT_rich Low_complexity Low_complexity 1 28 0 3 819 438 244 94 0 chr3 30677933 30678060 -128921723 + B1_Mur1 SINE Alu 3 141 -8 3 819 432 171 0 0 chr3 30678061 30678143 -128921640 + GA-rich Low_complexity Low_complexity 1 82 0 3 819 2646 40 0 6 chr3 30678218 30678543 -128921240 + L1Md_F2 LINE L1 6260 6582 0 3 819 219 69 0 0 chr3 30678565 30678594 -128921189 + (A)n Simple_repeat Simple_repeat 1 29 0 3 819 623 125 92 0 chr3 30678624 30678744 -128921039 - Lx9 LINE L1 -2 7642 7512 3 819 924 200 92 36 chr3 30678753 30678947 -128920836 - RLTR25A LTR ERVK 0 1103 906 3 819 339 25 0 0 chr3 30678947 30678987 -128920796 + (TC)n Simple_repeat Simple_repeat 1 40 0 3 819 924 200 92 36 chr3 30678987 30679041 -128920742 - RLTR25A LTR ERVK -198 905 842 3 819 289 135 200 63 chr3 30679061 30679156 -128920627 - RLTR25A LTR ERVK -186 842 735 3 819 1472 157 49 87 chr3 30679351 30679777 -128920006 - RMER17C LTR ERVK 0 410 1 3 819 3530 177 125 35 chr3 30679788 30680571 -128919212 - RLTR25B LTR ERVK -174 854 1 3 819 4016 184 22 21 chr3 30680571 30681419 -128918364 - Lx9 LINE L1 -148 7496 6648 3 819 385 245 19 15 chr3 30681751 30681865 -128917918 + B3A SINE B2 1 118 -98 3 819 495 0 0 0 chr3 30681912 30681967 -128917816 + (GA)n Simple_repeat Simple_repeat 2 56 0 3 819 868 190 48 222 chr3 30682031 30682220 -128917563 + B3 SINE B2 39 210 -6 3 819 882 56 158 16 chr3 30683376 30683503 -128916280 + B1_Mm SINE Alu 2 146 -1 3 819 295 307 58 14 chr3 30683606 30683745 -128916038 + LTR33B LTR ERVL 357 501 -2 3 819 2509 179 75 23 chr3 30683902 30684434 -128915349 - Lx5 LINE L1 -3 7047 6488 3 819 703 162 41 34 chr3 30684507 30684654 -128915129 - B1_Mur3 SINE Alu -1 148 1 3 819 22 56 0 0 chr3 30684678 30684714 -128915069 + AT_rich Low_complexity Low_complexity 1 36 0 3 819 1126 230 44 55 chr3 30684791 30684981 -128914802 - MTD LTR MaLR -18 401 211 3 819 336 48 0 0 chr3 30684981 30685023 -128914760 + (CCCCCT)n Simple_repeat Simple_repeat 3 44 0 3 819 588 168 101 0 chr3 30685033 30685152 -128914631 - B1_Mur2 SINE Alu -14 135 5 3 819 1126 227 46 57 chr3 30685152 30685222 -128914561 - MTD LTR MaLR -209 210 143 3 819 231 36 0 0 chr3 30685280 30685308 -128914475 + (CAAAA)n Simple_repeat Simple_repeat 1 28 0 3 819 694 321 93 45 chr3 30685432 30685830 -128913953 - MER34A LTR ERV1 -153 418 2 3 819 248 70 0 23 chr3 30686168 30686212 -128913571 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 3 819 1139 44 0 0 chr3 30686213 30686348 -128913435 - B1_Mm SINE Alu -12 135 1 3 819 324 319 128 64 chr3 30686392 30687021 -128912762 + L2a LINE L2 2697 3380 -46 3 819 1458 33 21 27 chr3 30687047 30687234 -128912549 + B2_Mm1a SINE B2 2 187 -6 3 819 1516 269 56 31 chr3 30688344 30688793 -128910990 + MT2A LTR ERVL 2 461 -72 3 819 996 79 14 7 chr3 30688973 30689114 -128910669 + B1_Mur4 SINE Alu 9 150 0 3 819 268 181 0 53 chr3 30689116 30689192 -128910591 + A-rich Low_complexity Low_complexity 4 75 0 3 819 10937 99 46 52 chr3 30689204 30691043 -128908740 - RLTR22_Mur LTR ERVK -5 1843 17 3 819 203 265 24 12 chr3 30691944 30692028 -128907755 + MER5A DNA MER1_type 101 185 -4 3 819 21 0 0 0 chr3 30692727 30692748 -128907035 + GC_rich Low_complexity Low_complexity 1 21 0 3 819 279 0 0 0 chr3 30693806 30693837 -128905946 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 3 819 566 275 130 34 chr3 30694233 30694410 -128905373 - B3A SINE B2 -4 194 1 3 819 359 210 136 0 chr3 30695090 30695171 -128904612 + RSINE1 SINE B4 46 137 -28 3 819 468 77 0 0 chr3 30695172 30695237 -128904546 + (CA)n Simple_repeat Simple_repeat 2 66 0 3 819 280 302 90 39 chr3 30695247 30695402 -128904381 - MIR3 SINE MIR -38 170 8 3 819 654 268 19 85 chr3 30695485 30695697 -128904086 - B3A SINE B2 0 198 1 3 819 195 42 0 0 chr3 30696057 30696081 -128903702 + (CACCC)n Simple_repeat Simple_repeat 4 27 0 3 819 49 32 0 0 chr3 30700916 30700979 -128898804 + AT_rich Low_complexity Low_complexity 1 63 0 3 819 471 228 20 0 chr3 30700979 30701080 -128898703 + ID_B1 SINE B4 122 224 0 3 819 241 325 42 17 chr3 30701346 30701479 -128898304 - MIR SINE MIR -127 141 3 3 819 528 284 64 25 chr3 30701664 30701866 -128897917 + B3 SINE B2 1 210 -6 3 819 722 260 30 10 chr3 30702203 30702405 -128897378 - B3 SINE B2 -10 206 1 3 819 1053 123 34 0 chr3 30702749 30702928 -128896855 - L1Md_F2 LINE L1 0 6582 6398 3 819 26 30 0 0 chr3 30702938 30702971 -128896812 + AT_rich Low_complexity Low_complexity 1 33 0 3 819 1204 62 0 0 chr3 30702971 30703117 -128896666 + B1_Mm SINE Alu 2 147 0 3 819 1150 130 22 6 chr3 30703122 30703300 -128896483 - B2_Mm2 SINE B2 -14 181 1 3 819 181 314 116 98 chr3 30704233 30704406 -128895377 - MIRb SINE MIR -32 236 61 3 819 783 211 128 0 chr3 30704467 30704685 -128895098 - Lx7 LINE L1 -16 7680 7435 3 819 7856 144 38 142 chr3 30704712 30705636 -128894147 - Lx7 LINE L1 -1688 6008 5131 3 819 640 193 82 25 chr3 30705636 30705758 -128894025 - B3 SINE B2 -86 130 2 3 819 7856 144 38 142 chr3 30705758 30706992 -128892791 - Lx7 LINE L1 -1688 5130 3956 3 819 1112 65 0 7 chr3 30707132 30707271 -128892512 + B1_Mus2 SINE Alu 1 138 -9 3 819 189 26 79 0 chr3 30707271 30707309 -128892474 + (CAA)n Simple_repeat Simple_repeat 2 42 0 3 819 191 36 36 0 chr3 30707323 30707351 -128892432 + (GA)n Simple_repeat Simple_repeat 2 30 0 3 819 235 289 0 13 chr3 30708801 30708878 -128890905 + GA-rich Low_complexity Low_complexity 2 77 0 3 819 192 179 0 0 chr3 30708882 30708921 -128890862 + A-rich Low_complexity Low_complexity 1 39 0 4 819 364 262 178 11 chr3 30708990 30709175 -128890608 + B3 SINE B2 1 216 0 4 819 262 318 101 67 chr3 30709623 30709832 -128889951 - MLT1J LTR MaLR -6 506 291 4 819 287 330 8 42 chr3 30709905 30710025 -128889758 - MLT1J LTR MaLR -395 117 2 4 819 324 0 0 0 chr3 30710581 30710617 -128889166 + (CA)n Simple_repeat Simple_repeat 1 36 0 4 819 601 199 71 64 chr3 30710679 30710819 -128888964 + B1_Mur1 SINE Alu 1 141 -8 4 819 409 211 0 0 chr3 30711858 30711929 -128887854 - ID4 SINE ID -10 73 3 4 819 24 0 0 0 chr3 30712296 30712320 -128887463 + AT_rich Low_complexity Low_complexity 1 24 0 4 819 222 37 0 0 chr3 30712695 30712722 -128887061 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 4 819 28 79 0 0 chr3 30713528 30713591 -128886192 + AT_rich Low_complexity Low_complexity 1 63 0 4 819 23 54 0 0 chr3 30713640 30713677 -128886106 + AT_rich Low_complexity Low_complexity 1 37 0 4 819 362 282 0 68 chr3 30713977 30714095 -128885688 - PB1D9 SINE Alu -9 111 2 4 819 1083 37 0 0 chr3 30714173 30714308 -128885475 + B1_Mus2 SINE Alu 13 147 0 4 819 22 56 0 0 chr3 30714367 30714403 -128885380 + AT_rich Low_complexity Low_complexity 1 36 0 4 819 271 286 66 9 chr3 30714637 30714743 -128885040 - MamRep1161 DNA TcMar -431 526 415 4 819 830 295 10 10 chr3 30715019 30715228 -128884555 - ID_B1 SINE B4 -8 216 8 4 819 716 212 30 0 chr3 30715971 30716103 -128883680 + B1_Mur3 SINE Alu 3 138 -11 4 819 292 74 0 69 chr3 30716103 30716161 -128883622 + (GGAA)n Simple_repeat Simple_repeat 1 54 0 4 819 216 0 0 0 chr3 30716168 30716192 -128883591 + (CAGG)n Simple_repeat Simple_repeat 2 25 0 4 819 238 270 14 113 chr3 30716235 30716275 -128883508 + MT2B2 LTR ERVL 130 155 -429 4 819 456 294 19 10 chr3 30716275 30716407 -128883376 + PB1D10 SINE Alu 1 140 -9 4 819 241 340 54 61 chr3 30716407 30716422 -128883361 + B4A SINE B4 86 231 -61 4 819 273 312 38 6 chr3 30716795 30716953 -128882830 + ORSL DNA Tip100 1 163 -112 4 819 24 0 0 0 chr3 30720154 30720178 -128879605 + AT_rich Low_complexity Low_complexity 1 24 0 4 819 1378 223 91 16 chr3 30720323 30720706 -128879077 + MER82 DNA MER2_type 1 412 -241 4 819 475 179 48 0 chr3 30720925 30721009 -128878774 - B1F2 SINE Alu -26 123 36 4 819 549 0 0 0 chr3 30721909 30721970 -128877813 + (TG)n Simple_repeat Simple_repeat 2 62 0 4 819 270 225 205 3 chr3 30721971 30722064 -128877719 - B3A SINE B2 -48 168 54 4 819 658 210 177 0 chr3 30722535 30722716 -128877067 - MTD LTR MaLR -4 415 203 4 819 537 16 0 0 chr3 30722716 30722778 -128877005 + (TC)n Simple_repeat Simple_repeat 2 63 0 4 819 5084 165 132 2 chr3 30722797 30723825 -128875958 - Lx9 LINE L1 -8 7636 6475 4 819 325 363 57 46 chr3 30724193 30724476 -128875307 + MLT1K LTR MaLR 295 580 -15 4 819 1023 45 0 0 chr3 30725432 30725566 -128874217 - B1_Mus1 SINE Alu -1 147 14 4 819 665 294 112 101 chr3 30725635 30725682 -128874101 - L1M2 LINE L1 -2873 3972 3921 4 819 270 0 0 0 chr3 30725682 30725712 -128874071 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 4 819 665 295 116 71 chr3 30725712 30727241 -128872542 - L1M2 LINE L1 -2925 3920 2396 4 819 583 78 11 11 chr3 30727386 30727477 -128872306 + (TTCC)n Simple_repeat Simple_repeat 3 93 0 4 819 283 288 66 52 chr3 30727978 30728162 -128871621 + MTE2a LTR MaLR 3 194 -185 4 819 851 275 10 0 chr3 30728168 30728368 -128871415 + B3 SINE B2 12 213 -3 4 819 418 284 42 17 chr3 30728597 30728715 -128871068 - B4 SINE B4 -168 124 4 4 819 225 182 0 0 chr3 30728715 30728759 -128871024 + (CA)n Simple_repeat Simple_repeat 2 45 0 4 819 247 105 0 0 chr3 30729315 30729353 -128870430 + B2_Mm2 SINE B2 1 38 -157 4 819 326 221 82 48 chr3 30729529 30729654 -128870129 + RLTR13D3 LTR ERVK 983 1072 -42 4 819 2385 88 19 0 chr3 30729691 30730008 -128869775 - ORR1A2 LTR MaLR -4 323 1 4 819 370 279 68 82 chr3 30731135 30731342 -128868441 - RLTR16 LTR ERVK -271 234 31 4 819 1318 77 28 0 chr3 30732311 30732492 -128867291 - B2_Mm2 SINE B2 -9 186 1 4 819 188 34 0 33 chr3 30732546 30732576 -128867207 + (TTTA)n Simple_repeat Simple_repeat 4 32 0 4 819 322 209 15 15 chr3 30733015 30733083 -128866700 - ID4_ SINE ID -15 68 1 4 819 1060 238 51 70 chr3 30733601 30733971 -128865812 + MTE2a LTR MaLR 3 365 -14 4 819 922 71 0 0 chr3 30734474 30734600 -128865183 + B2_Mm2 SINE B2 2 127 -68 4 819 560 252 116 30 chr3 30735681 30735754 -128864029 + L1MC LINE L1 5070 5144 -1002 4 819 1208 224 82 20 chr3 30735754 30736110 -128863673 - MTEa LTR MaLR 0 379 2 4 819 560 252 116 30 chr3 30736110 30736301 -128863482 + L1MC LINE L1 5145 5358 -788 4 819 1845 229 4 204 chr3 30736301 30737064 -128862719 - RMER19C LTR ERVK 0 611 2 4 819 560 139 35 92 chr3 30737064 30737120 -128862663 + L1MC LINE L1 5359 5419 -914 4 819 334 350 0 0 chr3 30737281 30737381 -128862402 - B4A SINE B4 -183 109 10 4 819 180 254 17 17 chr3 30737845 30737905 -128861878 + MIRb SINE MIR 23 82 -186 4 819 210 171 0 0 chr3 30738055 30738096 -128861687 + (TG)n Simple_repeat Simple_repeat 1 41 0 4 819 183 80 0 0 chr3 30738101 30738126 -128861657 + (CG)n Simple_repeat Simple_repeat 1 25 0 4 819 349 125 36 0 chr3 30738126 30738182 -128861601 - HAL1-3A_ME LINE L1 -847 2011 1954 4 819 564 322 72 50 chr3 30738380 30738700 -128861083 - Lx8 LINE L1 0 7473 7147 4 819 11565 205 77 118 chr3 30738709 30739580 -128860203 + Lx5 LINE L1 2248 3150 -2736 4 819 672 249 109 34 chr3 30739580 30739815 -128859968 - RLTR15 LTR ERVK -15 344 107 4 819 648 0 0 0 chr3 30739815 30739887 -128859896 + (TC)n Simple_repeat Simple_repeat 2 73 0 4 819 672 249 109 34 chr3 30739887 30739971 -128859812 - RLTR15 LTR ERVK -253 106 2 4 819 12181 162 79 39 chr3 30739971 30742754 -128857029 + Lx5 LINE L1 3138 6060 -990 4 819 2170 254 32 6 chr3 30742803 30743338 -128856445 - MERVK26-int LTR ERVK -3038 3881 3333 4 819 8107 63 20 0 chr3 30743338 30744573 -128855210 + L1_Mus1 LINE L1 5283 6567 0 4 819 3385 245 39 14 chr3 30744588 30745387 -128854396 - MERVK26-int LTR ERVK -3576 3343 2525 4 819 2358 299 58 17 chr3 30745425 30746516 -128853267 - MERVK26-int LTR ERVK -4558 2361 1226 4 819 283 161 52 35 chr3 30746829 30746887 -128852896 + MTEa LTR MaLR 7 65 -314 4 819 444 228 166 41 chr3 30746951 30747120 -128852663 + MTEa LTR MaLR 182 371 -8 4 819 809 195 7 20 chr3 30747176 30747328 -128852455 + B1_Mur4 SINE Alu 1 150 0 4 819 491 207 93 59 chr3 30747835 30748071 -128851712 - RLTR15 LTR ERVK -17 342 99 4 819 246 62 0 0 chr3 30748074 30748106 -128851677 + (TCTCCC)n Simple_repeat Simple_repeat 1 32 0 4 819 424 247 41 0 chr3 30748389 30748486 -128851297 + ORR1E LTR MaLR 8 108 -251 4 819 213 354 75 53 chr3 30748888 30749076 -128850707 - L2 LINE L2 -541 2878 2687 4 819 959 214 52 21 chr3 30749189 30749380 -128850403 - B3 SINE B2 -19 197 1 4 819 1044 185 19 14 chr3 30749541 30749755 -128850028 + B3 SINE B2 2 216 0 4 819 207 0 0 0 chr3 30749839 30749862 -128849921 + (A)n Simple_repeat Simple_repeat 1 23 0 4 819 802 148 34 34 chr3 30750005 30750137 -128849646 + B1_Mm SINE Alu 1 137 -10 4 819 420 20 0 0 chr3 30750137 30750186 -128849597 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 4 819 802 148 34 34 chr3 30750186 30750200 -128849583 + B1_Mm SINE Alu 138 147 0 4 819 269 53 0 107 chr3 30750204 30750288 -128849495 + A-rich Low_complexity Low_complexity 2 76 0 4 819 207 204 0 0 chr3 30750288 30750342 -128849441 + GA-rich Low_complexity Low_complexity 3 56 0 4 819 529 217 16 8 chr3 30750362 30750483 -128849300 + B4A SINE B4 6 127 -165 4 819 450 79 0 0 chr3 30750616 30750679 -128849104 + (CA)n Simple_repeat Simple_repeat 1 63 0 4 819 2469 144 44 7 chr3 30750807 30751213 -128848570 + MTC LTR MaLR 1 421 0 4 819 678 238 87 0 chr3 30751226 30751398 -128848385 + B3A SINE B2 2 188 -10 4 819 307 284 70 111 chr3 30751617 30752033 -128847750 + RMER10A LTR ERVL 18 416 -26 4 819 318 106 0 0 chr3 30752259 30752306 -128847477 + (T)n Simple_repeat Simple_repeat 1 47 0 4 819 1209 48 0 0 chr3 30752306 30752452 -128847331 - B1_Mus1 SINE Alu 0 148 3 4 819 336 143 0 0 chr3 30752668 30752724 -128847059 - 4.5SRNA scRNA scRNA -37 57 2 4 819 297 241 13 0 chr3 30753056 30753135 -128846648 - MTEb LTR MaLR -4 375 296 4 819 795 243 60 9 chr3 30753165 30753381 -128846402 - MTEb LTR MaLR -152 227 1 4 819 360 0 0 0 chr3 30756317 30756357 -128843426 + (CA)n Simple_repeat Simple_repeat 1 40 0 4 819 567 0 0 0 chr3 30756357 30756419 -128843364 + (GA)n Simple_repeat Simple_repeat 2 64 0 4 819 285 231 0 0 chr3 30756541 30756606 -128843177 + ID4 SINE ID 10 74 -9 4 819 1154 230 32 19 chr3 30757162 30757472 -128842311 - RMER5 LTR ERV1 -23 511 198 4 819 1265 41 0 0 chr3 30758123 30758269 -128841514 + B1_Mus2 SINE Alu 2 147 0 4 819 24 0 0 0 chr3 30758277 30758301 -128841482 + AT_rich Low_complexity Low_complexity 1 24 0 4 819 332 297 109 0 chr3 30758301 30758466 -128841317 + L1MB7 LINE L1 5726 5908 -276 4 819 1227 48 0 0 chr3 30758531 30758678 -128841105 - B1_Mus2 SINE Alu 0 147 1 4 819 6860 58 8 5 chr3 30758678 30759529 -128840254 - L1_Mus2 LINE L1 -9 6557 5703 4 819 291 225 0 0 chr3 30759627 30759698 -128840085 + CT-rich Low_complexity Low_complexity 3 73 0 4 819 2709 291 81 13 chr3 30759700 30760748 -128839035 - Lx8 LINE L1 -50 7423 6305 4 819 794 234 5 26 chr3 30761313 30761506 -128838277 - B3A SINE B2 -8 190 2 4 819 471 243 141 11 chr3 30761522 30761713 -128838070 - ID_B1 SINE B4 -5 219 4 4 819 508 233 67 8 chr3 30761779 30761913 -128837870 - B1F SINE Alu -2 147 6 4 819 415 270 55 68 chr3 30761913 30761942 -128837841 - ID_B1 SINE B4 -2 222 62 4 819 868 268 30 21 chr3 30761986 30762222 -128837561 - B4A SINE B4 -14 278 41 5 819 21 0 0 0 chr3 30762459 30762480 -128837303 + AT_rich Low_complexity Low_complexity 1 21 0 5 819 658 310 21 24 chr3 30762618 30762909 -128836874 - B4A SINE B4 -2 290 1 5 819 1442 211 148 3 chr3 30763019 30763385 -128836398 + MTD LTR MaLR 1 419 0 5 819 1419 147 184 3 chr3 30764501 30764735 -128835048 - ORR1B1 LTR MaLR -1 393 155 5 819 601 44 70 0 chr3 30764735 30764849 -128834934 + (TA)n Simple_repeat Simple_repeat 1 122 0 5 819 1419 164 150 9 chr3 30764849 30764923 -128834860 - ORR1B1 LTR MaLR -240 154 48 5 819 3306 159 78 100 chr3 30764938 30765865 -128833918 - RMER17A2 LTR ERVK 0 906 1 5 819 884 243 126 53 chr3 30766369 30766809 -128832974 - RMER5 LTR ERV1 0 534 63 5 819 285 250 83 0 chr3 30767577 30767661 -128832122 - U6 snRNA snRNA -7 100 10 5 819 244 258 52 88 chr3 30767680 30767816 -128831967 + MTEa LTR MaLR 1 131 -248 5 819 412 0 28 42 chr3 30767898 30767969 -128831814 + (GTGTG)n Simple_repeat Simple_repeat 1 70 0 5 819 247 294 221 25 chr3 30767969 30768086 -128831697 - RSINE1 SINE B4 -9 156 15 5 819 267 43 61 61 chr3 30768141 30768190 -128831593 - L1ME4a LINE L1 -97 6027 5979 5 819 381 252 50 0 chr3 30768197 30768296 -128831487 - PB1D7 SINE Alu 0 120 17 5 819 249 246 43 14 chr3 30768469 30768539 -128831244 + ID4 SINE ID 2 73 -10 5 819 935 156 95 16 chr3 30769954 30770143 -128829640 + URR1B DNA MER1_type 13 216 -9 5 819 289 296 22 94 chr3 30770277 30770415 -128829368 - B4A SINE B4 -163 129 2 5 819 232 163 47 0 chr3 30770497 30770540 -128829243 - L1M5 LINE L1 -721 5723 5679 5 819 349 267 189 16 chr3 30770535 30770725 -128829058 - L1ME1 LINE L1 -1 6178 5956 5 819 318 26 0 0 chr3 30770826 30770865 -128828918 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 5 819 466 294 32 52 chr3 30770911 30771065 -128828718 - B4A SINE B4 -140 152 2 5 819 796 287 66 42 chr3 30771223 30771500 -128828283 - L1ME1 LINE L1 -631 5728 5470 5 819 1703 200 25 8 chr3 30771500 30771868 -128827915 - ORR1D1 LTR MaLR 0 374 1 5 819 796 283 69 30 chr3 30771868 30772016 -128827767 - L1ME1 LINE L1 -710 5469 5315 5 819 1170 115 94 0 chr3 30772031 30772222 -128827561 - Lx2 LINE L1 -14 6983 6775 5 819 7600 96 11 5 chr3 30772221 30773320 -128826463 - Lx2 LINE L1 -353 6644 5539 5 819 27 29 0 0 chr3 30773321 30773355 -128826428 + AT_rich Low_complexity Low_complexity 1 34 0 5 819 186 43 0 0 chr3 30773439 30773462 -128826321 + (CA)n Simple_repeat Simple_repeat 2 24 0 5 819 2620 260 86 19 chr3 30773486 30774491 -128825292 - Lx9 LINE L1 -185 7459 6226 5 819 264 30 0 0 chr3 30774504 30774537 -128825246 + (TG)n Simple_repeat Simple_repeat 1 33 0 5 819 1312 164 133 52 chr3 30774546 30774719 -128825064 - ORR1C2 LTR MaLR -9 375 181 5 819 215 79 26 0 chr3 30774719 30774757 -128825026 + (CAGA)n Simple_repeat Simple_repeat 2 40 0 5 819 1312 164 133 52 chr3 30774757 30774930 -128824853 - ORR1C2 LTR MaLR -204 180 2 5 819 1118 271 55 24 chr3 30775000 30775420 -128824363 - Lx9 LINE L1 -1541 6103 5671 5 819 282 317 35 28 chr3 30775485 30775628 -128824155 - ORR1E LTR MaLR -162 197 54 5 819 301 238 126 0 chr3 30775781 30775924 -128823859 - L1M5 LINE L1 -667 5497 5337 5 819 297 288 109 48 chr3 30776905 30777139 -128822644 + L1M2 LINE L1 1469 1727 -5122 5 819 480 211 116 75 chr3 30777314 30777581 -128822202 + L1M2 LINE L1 1753 2030 -4819 5 819 1801 224 162 39 chr3 30777646 30777686 -128822097 + Lx9 LINE L1 6943 6976 -668 5 819 1891 201 26 44 chr3 30777686 30778071 -128821712 - ORR1C1 LTR MaLR 0 378 1 5 819 1801 224 162 39 chr3 30778071 30778642 -128821141 + Lx9 LINE L1 6977 7629 -15 5 819 671 323 53 47 chr3 30778660 30778732 -128821051 + L1M2 LINE L1 1991 2059 -4790 5 819 981 144 29 0 chr3 30778732 30778871 -128820912 + B1_Mus1 SINE Alu 1 143 -5 5 819 671 323 53 47 chr3 30778871 30779396 -128820387 + L1M2 LINE L1 2060 2592 -4257 5 819 448 262 197 15 chr3 30779402 30779534 -128820249 + RSINE1 SINE B4 3 158 -7 5 819 375 266 109 124 chr3 30779697 30780027 -128819756 - ORR1E LTR MaLR -34 325 1 5 819 522 292 180 94 chr3 30780027 30780156 -128819627 - MTE-int LTR MaLR -53 1527 1366 5 819 1184 74 0 26 chr3 30780156 30780308 -128819475 + B1_Mus1 SINE Alu 1 148 0 5 819 522 292 180 94 chr3 30780308 30780758 -128819025 - MTE-int LTR MaLR -215 1365 898 5 819 280 296 140 94 chr3 30780881 30781116 -128818667 + MTE-int LTR MaLR 770 1015 -565 5 819 233 348 43 0 chr3 30781590 30781682 -128818101 - MLT1C LTR MaLR -361 106 11 5 819 395 234 96 0 chr3 30781826 30781920 -128817863 - Lx7 LINE L1 0 7696 7594 5 819 1248 108 0 1 chr3 30782368 30783580 -128816203 + (TG)n Simple_repeat Simple_repeat 1 1211 0 5 819 555 295 44 45 chr3 30783609 30783906 -128815877 - L1M4 LINE L1 -1241 4905 4605 5 819 630 302 201 21 chr3 30784019 30784600 -128815183 - L1M4 LINE L1 -1836 4310 3625 5 819 3573 204 159 16 chr3 30784628 30785513 -128814270 - RMER1B Other Other -11 1055 44 5 819 1138 95 9 5 chr3 30785591 30785814 -128813969 + (TTTC)n Simple_repeat Simple_repeat 1 224 0 5 819 1300 40 0 0 chr3 30785814 30785962 -128813821 - B1_Mus1 SINE Alu 0 148 1 5 819 997 199 23 46 chr3 30785966 30786182 -128813601 - B3 SINE B2 -3 213 3 5 819 407 255 178 37 chr3 30786962 30787153 -128812630 - MLT1I LTR MaLR 0 411 194 5 819 457 204 18 12 chr3 30787209 30787378 -128812405 + (TG)n Simple_repeat Simple_repeat 2 171 0 5 819 551 214 30 10 chr3 30787829 30787981 -128811802 - RLTR20B3 LTR ERVK -3 525 374 5 819 621 187 75 46 chr3 30787976 30788150 -128811633 - RLTR20B3 LTR ERVK -378 199 21 5 819 501 254 119 24 chr3 30788219 30788429 -128811354 + Charlie1b DNA MER1_type 105 334 -189 5 819 186 43 0 0 chr3 30788636 30788659 -128811124 + (TTTTC)n Simple_repeat Simple_repeat 3 25 0 5 819 1339 42 6 0 chr3 30788661 30788826 -128810957 - L1Md_F2 LINE L1 -11 6571 6406 5 819 689 132 26 9 chr3 30788994 30789109 -128810674 + PB1D9 SINE Alu 2 118 -2 5 819 507 33 0 0 chr3 30789255 30789316 -128810467 + (TTA)n Simple_repeat Simple_repeat 2 62 0 5 819 543 248 95 58 chr3 30789997 30790134 -128809649 - RSINE1 SINE B4 -23 142 1 5 819 1981 307 75 16 chr3 30790977 30791735 -128808048 - Lx7 LINE L1 -359 7337 6535 5 819 2693 224 82 4 chr3 30791746 30792464 -128807319 - L1_Mur3 LINE L1 -2077 3803 3030 5 819 415 272 31 39 chr3 30792468 30792598 -128807185 - B1F2 SINE Alu -17 132 4 5 819 423 0 0 0 chr3 30792881 30792928 -128806855 + (TG)n Simple_repeat Simple_repeat 1 47 0 5 819 180 0 54 54 chr3 30793281 30793318 -128806465 + (GTTTG)n Simple_repeat Simple_repeat 2 38 0 5 819 389 243 114 63 chr3 30793420 30793566 -128806217 + L1_Mur3 LINE L1 3318 3473 -2407 5 819 1247 64 0 0 chr3 30793566 30793707 -128806076 + B1_Mus2 SINE Alu 1 141 -6 5 819 389 243 114 63 chr3 30793707 30793718 -128806065 + L1_Mur3 LINE L1 3474 3483 -2397 5 819 4125 24 2 9 chr3 30794020 30794481 -128805302 + L1Md_F2 LINE L1 6113 6570 -12 5 819 302 238 107 19 chr3 30796080 30796183 -128803600 - L1MEg LINE L1 -4091 1993 1882 5 819 1075 43 0 0 chr3 30796188 30796326 -128803457 - B1_Mus1 SINE Alu 0 148 11 5 819 452 250 41 75 chr3 30796194 30796341 -128803442 - B4A SINE B4 -71 221 80 5 819 341 194 56 0 chr3 30796524 30796596 -128803187 - MER20 DNA MER1_type -112 107 32 5 819 253 0 54 0 chr3 30796623 30796660 -128803123 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 5 819 660 264 137 22 chr3 30796802 30796984 -128802799 + ID_B1 SINE B4 3 205 -19 5 819 26 0 0 0 chr3 30798919 30798945 -128800838 + AT_rich Low_complexity Low_complexity 1 26 0 5 819 22 0 0 0 chr3 30799595 30799617 -128800166 + AT_rich Low_complexity Low_complexity 1 22 0 5 819 216 0 0 0 chr3 30799788 30799812 -128799971 + (TGG)n Simple_repeat Simple_repeat 1 24 0 5 819 916 109 29 0 chr3 30799813 30799950 -128799833 - B1_Mur3 SINE Alu -8 141 1 5 819 180 0 0 0 chr3 30800650 30800670 -128799113 + (CAA)n Simple_repeat Simple_repeat 2 21 0 5 820 252 320 93 0 chr3 30802408 30802483 -128797300 + B1F1 SINE Alu 6 87 -62 5 820 450 296 62 91 chr3 30805423 30805631 -128794152 - MER20 DNA MER1_type -17 202 1 5 820 417 308 71 59 chr3 30806918 30806996 -128792787 - ID_B1 SINE B4 -52 172 90 5 820 261 83 0 0 chr3 30806996 30807032 -128792751 + (CA)n Simple_repeat Simple_repeat 2 37 0 5 820 417 308 71 59 chr3 30807032 30807122 -128792661 - ID SINE ID -135 89 3 5 820 1087 43 29 0 chr3 30809546 30809686 -128790097 + MTB_Mm LTR MaLR 1 144 -263 5 820 6199 84 33 80 chr3 30809677 30810714 -128789069 + MTA_Mm-int LTR MaLR 111 1098 0 5 820 3509 41 5 0 chr3 30810714 30811108 -128788675 + MTA_Mm LTR MaLR 1 396 0 5 820 234 0 0 0 chr3 30811909 30811935 -128787848 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 5 820 3204 90 91 7 chr3 30812139 30812577 -128787206 + MT2C_Mm LTR ERVL 1 475 0 5 820 604 218 47 13 chr3 30813951 30814100 -128785683 + B3 SINE B2 52 205 -11 5 820 242 317 0 0 chr3 30814978 30815038 -128784745 - B3 SINE B2 -156 60 1 5 820 413 280 40 8 chr3 30815060 30815186 -128784597 + B1F2 SINE Alu 3 132 -17 5 820 32 43 0 0 chr3 30815192 30815238 -128784545 + AT_rich Low_complexity Low_complexity 1 46 0 5 820 24 0 0 0 chr3 30816004 30816028 -128783755 + AT_rich Low_complexity Low_complexity 1 24 0 5 820 207 0 0 0 chr3 30816107 30816130 -128783653 + (CCCCAA)n Simple_repeat Simple_repeat 5 27 0 5 820 278 271 0 0 chr3 30816308 30816367 -128783416 - ID SINE ID -141 83 25 5 820 257 282 155 0 chr3 30816367 30816378 -128783405 - ID4 SINE ID 0 82 2 5 820 1508 75 11 0 chr3 30816539 30816726 -128783057 + B2_Mm1t SINE B2 2 190 -3 5 820 967 238 104 19 chr3 30816745 30817015 -128782768 + Lx8 LINE L1 7179 7471 -2 5 820 408 210 48 39 chr3 30817428 30817532 -128782251 + PB1D10 SINE Alu 1 105 -12 5 820 853 62 0 0 chr3 30817661 30817773 -128782010 - MTB_Mm LTR MaLR -295 112 1 5 820 2341 132 39 113 chr3 30818482 30818995 -128780788 - IAPLTR2_Mm LTR ERVK 0 475 1 5 820 369 0 0 0 chr3 30819694 30819735 -128780048 + (TC)n Simple_repeat Simple_repeat 2 42 0 5 820 1193 68 0 7 chr3 30819736 30819883 -128779900 - B1_Mus2 SINE Alu 0 147 2 5 820 225 65 0 0 chr3 30819889 30819920 -128779863 + (TC)n Simple_repeat Simple_repeat 2 32 0 5 820 1292 77 54 0 chr3 30819921 30820089 -128779694 - B2_Mm1t SINE B2 -15 178 2 5 820 1956 145 108 51 chr3 30820187 30820622 -128779161 + RMER6B LTR ERVK 2 461 0 6 820 347 161 36 0 chr3 30820625 30820681 -128779102 - tRNA-Lys-AAG tRNA tRNA 0 76 19 6 820 344 154 0 0 chr3 30820683 30820735 -128779048 + MYSERV6-int LTR ERVK 6911 6962 -1997 6 820 42 17 0 17 chr3 30822062 30822099 -128777684 + AT_rich Low_complexity Low_complexity 1 37 0 6 820 366 302 28 9 chr3 30822099 30822206 -128777577 - PB1D10 SINE Alu -8 109 1 6 820 42 17 0 17 chr3 30822206 30822228 -128777555 + AT_rich Low_complexity Low_complexity 1 22 0 6 820 565 287 0 34 chr3 30822258 30822406 -128777377 - RSINE1 SINE B4 -17 148 6 6 820 19173 156 85 19 chr3 30822419 30823582 -128776201 + Lx5 LINE L1 1615 2879 -3001 6 820 1188 43 58 0 chr3 30823582 30823721 -128776062 + B1_Mm SINE Alu 1 147 0 6 820 19173 156 85 19 chr3 30823721 30825528 -128774255 + Lx5 LINE L1 2880 4783 -1097 6 820 1318 98 59 11 chr3 30825528 30825714 -128774069 + B2_Mm2 SINE B2 1 195 0 6 820 19173 209 91 78 chr3 30825714 30827587 -128772196 + Lx5 LINE L1 4784 6649 -401 6 820 261 0 0 0 chr3 30827587 30827616 -128772167 + (CA)n Simple_repeat Simple_repeat 2 30 0 6 820 1616 266 96 143 chr3 30827616 30827818 -128771965 + Lx5 LINE L1 6650 6858 -192 6 820 1420 100 11 0 chr3 30827818 30828008 -128771775 - B2_Mm1t SINE B2 -1 192 1 6 820 1616 266 96 143 chr3 30828008 30828200 -128771583 + Lx5 LINE L1 6859 7049 -1 6 820 904 189 0 0 chr3 30828387 30828535 -128771248 + B1_Mur4 SINE Alu 2 149 -1 6 820 458 260 9 48 chr3 30829814 30829919 -128769864 - ID_B1 SINE B4 -96 128 28 6 820 308 304 13 0 chr3 30829862 30829941 -128769842 - ID4_ SINE ID 0 83 4 6 820 495 0 0 0 chr3 30829956 30830011 -128769772 + (TG)n Simple_repeat Simple_repeat 2 56 0 6 820 762 260 66 48 chr3 30830034 30830305 -128769478 - B4A SINE B4 -16 276 1 6 820 23 86 0 0 chr3 30830486 30830544 -128769239 + AT_rich Low_complexity Low_complexity 1 58 0 6 820 405 220 54 11 chr3 30832046 30832138 -128767645 + PB1D10 SINE Alu 3 98 -19 6 820 21 0 0 0 chr3 30833391 30833412 -128766371 + AT_rich Low_complexity Low_complexity 1 21 0 6 820 26 0 0 0 chr3 30833649 30833675 -128766108 + AT_rich Low_complexity Low_complexity 1 26 0 6 820 395 221 13 0 chr3 30833802 30833879 -128765904 - ID4_ SINE ID 0 83 6 6 820 275 330 50 8 chr3 30834144 30834263 -128765520 - B1F1 SINE Alu -25 124 1 6 820 679 193 37 0 chr3 30837070 30837205 -128762578 + B1_Mur1 SINE Alu 1 140 -9 6 820 868 231 39 20 chr3 30837422 30837625 -128762158 + B3 SINE B2 3 209 -7 6 820 927 80 63 28 chr3 30837786 30837928 -128761855 + B1_Mus1 SINE Alu 2 148 0 6 820 23 0 0 0 chr3 30837950 30837973 -128761810 + AT_rich Low_complexity Low_complexity 1 23 0 6 820 502 311 20 10 chr3 30838230 30838425 -128761358 - B3A SINE B2 0 198 2 6 820 21 57 0 0 chr3 30838750 30838785 -128760998 + AT_rich Low_complexity Low_complexity 1 35 0 6 820 292 240 59 57 chr3 30838879 30839000 -128760783 + MLT1A1 LTR MaLR 15 136 -238 6 820 591 268 20 34 chr3 30839038 30839185 -128760598 + RSINE1 SINE B4 15 159 -6 6 820 247 255 0 0 chr3 30839523 30839570 -128760213 + B1F SINE Alu 42 88 -61 6 820 351 0 0 0 chr3 30839570 30839609 -128760174 + (TAAA)n Simple_repeat Simple_repeat 4 42 0 6 820 414 0 0 0 chr3 30839672 30839718 -128760065 + (TAAA)n Simple_repeat Simple_repeat 1 46 0 6 820 585 28 0 0 chr3 30840121 30840192 -128759591 + (GAAA)n Simple_repeat Simple_repeat 2 72 0 6 820 425 316 0 7 chr3 30843667 30843807 -128755976 + B1F SINE Alu 4 142 -7 6 820 441 0 0 0 chr3 30844006 30844055 -128755728 + (CA)n Simple_repeat Simple_repeat 2 50 0 6 820 486 274 32 0 chr3 30844657 30844781 -128755002 + B1_Mur1 SINE Alu 2 129 -20 6 820 207 0 0 0 chr3 30844799 30844822 -128754961 + (CATA)n Simple_repeat Simple_repeat 2 24 0 6 820 207 100 0 0 chr3 30844822 30844852 -128754931 + (TG)n Simple_repeat Simple_repeat 2 31 0 6 820 424 241 49 21 chr3 30845702 30845846 -128753937 + B1F SINE Alu 1 148 -1 6 820 276 226 234 32 chr3 30846050 30846336 -128753447 - L1MB8 LINE L1 -52 6112 5762 6 820 320 258 41 10 chr3 30846386 30846484 -128753299 - L1MB8 LINE L1 -704 5474 5374 6 820 280 302 63 89 chr3 30846454 30846512 -128753271 - L1M5 LINE L1 -744 5402 5347 6 820 583 250 70 0 chr3 30846512 30846640 -128753143 - B1_Mur2 SINE Alu -11 138 2 6 820 549 300 63 72 chr3 30846640 30846763 -128753020 - L1M5 LINE L1 -800 5346 5238 6 820 1484 70 16 0 chr3 30846763 30846949 -128752834 - B2_Mm2 SINE B2 -6 189 1 6 820 549 298 62 53 chr3 30846949 30847244 -128752539 - L1M5 LINE L1 -897 5249 4937 6 820 26 74 0 0 chr3 30849493 30849547 -128750236 + AT_rich Low_complexity Low_complexity 1 54 0 6 820 1587 21 21 11 chr3 30850284 30850474 -128749309 - B2_Mm1a SINE B2 0 193 2 6 820 271 320 65 8 chr3 30850702 30850825 -128748958 + ID_B1 SINE B4 90 219 -5 6 820 334 279 43 136 chr3 30850845 30851007 -128748776 + B1F SINE Alu 2 148 -1 6 820 565 299 52 14 chr3 30851730 30851940 -128747843 + B4A SINE B4 2 219 -73 6 820 1148 61 0 45 chr3 30852232 30852386 -128747397 + B1_Mus1 SINE Alu 2 148 0 6 820 550 145 164 31 chr3 30852694 30852822 -128746961 + B1_Mur3 SINE Alu 5 149 0 6 820 262 180 48 16 chr3 30853150 30853212 -128746571 + ID4_ SINE ID 16 79 -4 6 820 426 277 182 32 chr3 30853266 30853486 -128746297 - MLT1A LTR MaLR -121 253 1 6 820 227 347 0 84 chr3 30853740 30853847 -128745936 - B3 SINE B2 -5 211 114 6 820 201 39 0 0 chr3 30854038 30854064 -128745719 + (TTTG)n Simple_repeat Simple_repeat 1 26 0 6 820 1180 89 88 16 chr3 30854186 30854368 -128745415 + B2_Mm2 SINE B2 1 195 0 6 820 1313 111 16 0 chr3 30854384 30854573 -128745210 + B2_Mm2 SINE B2 2 193 -2 6 820 4288 153 58 26 chr3 30854600 30855478 -128744305 + Lx6 LINE L1 4981 5916 -1544 6 820 1433 208 43 29 chr3 30855485 30855831 -128743952 + Lx6 LINE L1 7092 7442 -18 6 820 814 103 32 0 chr3 30855884 30856010 -128743773 - B3 SINE B2 -86 130 1 6 820 1227 61 0 0 chr3 30856010 30856157 -128743626 - B1_Mus2 SINE Alu 0 147 1 6 820 288 170 0 0 chr3 30856175 30856228 -128743555 + GA-rich Low_complexity Low_complexity 1 53 0 6 820 255 292 39 110 chr3 30856402 30856529 -128743254 + B2_Mm2 SINE B2 2 119 -76 6 820 706 182 263 6 chr3 30856552 30856723 -128743060 + B3 SINE B2 2 216 0 6 820 260 259 0 129 chr3 30857414 30857507 -128742276 - RSINE1 SINE B4 -83 82 2 6 820 292 303 51 64 chr3 30857543 30857779 -128742004 + RLTR42-int LTR ERVK 1156 1388 -4134 6 820 775 179 175 18 chr3 30857826 30857997 -128741786 + B3A SINE B2 1 198 0 6 820 542 173 96 0 chr3 30858535 30858639 -128741144 + B1_Mur4 SINE Alu 2 115 -35 6 820 1977 197 50 7 chr3 30858644 30859088 -128740695 + RLTR11A2 LTR ERVK 65 527 0 6 820 417 260 80 114 chr3 30859132 30859431 -128740352 + B4A SINE B4 4 292 0 6 820 561 174 83 0 chr3 30859499 30859608 -128740175 + B1_Mur4 SINE Alu 1 118 -32 6 820 323 252 84 34 chr3 30859508 30859627 -128740156 + ID_B1 SINE B4 90 214 -10 6 820 517 300 8 0 chr3 30859703 30859833 -128739950 + B1_Mur1 SINE Alu 6 136 -13 6 820 835 175 7 0 chr3 30860022 30860165 -128739618 - B1_Mur4 SINE Alu -1 149 6 6 820 29 47 0 0 chr3 30860174 30860217 -128739566 + AT_rich Low_complexity Low_complexity 1 43 0 6 820 22 35 0 0 chr3 30861600 30861629 -128738154 + AT_rich Low_complexity Low_complexity 1 29 0 6 820 503 299 49 49 chr3 30861725 30861887 -128737896 - RSINE1 SINE B4 -2 163 2 6 820 348 250 221 9 chr3 30861938 30862051 -128737732 + B3 SINE B2 50 186 -30 6 820 686 232 52 0 chr3 30862091 30862246 -128737537 + B3 SINE B2 2 164 -52 6 820 198 0 0 0 chr3 30863322 30863344 -128736439 + (A)n Simple_repeat Simple_repeat 1 22 0 6 820 817 154 0 0 chr3 30863357 30863487 -128736296 + B3 SINE B2 1 130 -86 6 820 22 56 0 0 chr3 30863515 30863551 -128736232 + AT_rich Low_complexity Low_complexity 1 36 0 6 820 753 199 13 33 chr3 30863560 30863711 -128736072 + B1_Mus1 SINE Alu 1 148 0 6 820 231 336 97 39 chr3 30863825 30863980 -128735803 + MIRb SINE MIR 86 249 -19 6 820 261 276 141 26 chr3 30863987 30864143 -128735640 - MIRb SINE MIR -10 258 85 6 820 186 43 0 0 chr3 30864761 30864784 -128734999 + (TGG)n Simple_repeat Simple_repeat 3 25 0 6 820 855 223 130 24 chr3 30865189 30865442 -128734341 + Lx7 LINE L1 7144 7423 -273 6 820 429 20 0 0 chr3 30865468 30865518 -128734265 + (TTTTC)n Simple_repeat Simple_repeat 2 51 0 6 820 749 158 22 15 chr3 30865522 30865657 -128734126 - B1_Mus1 SINE Alu -7 141 6 6 820 336 285 44 50 chr3 30865678 30865837 -128733946 + Lx7 LINE L1 7539 7696 0 6 820 434 230 40 0 chr3 30865982 30866082 -128733701 - B3 SINE B2 -112 104 1 6 820 344 188 220 51 chr3 30866171 30866289 -128733494 + ID_B1 SINE B4 83 220 -4 6 820 770 168 92 40 chr3 30866328 30866502 -128733281 + B3 SINE B2 1 183 -33 6 820 226 200 0 68 chr3 30867092 30867151 -128732632 - PB1D10 SINE Alu -13 104 50 6 820 246 62 0 0 chr3 30867874 30867906 -128731877 + (CGGA)n Simple_repeat Simple_repeat 4 35 0 6 820 211 303 26 26 chr3 30868577 30868655 -128731128 + ID4_ SINE ID 4 81 -2 6 820 1019 133 71 15 chr3 30868742 30868940 -128730843 + MTC LTR MaLR 180 388 -33 6 820 229 250 15 30 chr3 30869337 30869403 -128730380 + ID_B1 SINE B4 159 223 -1 6 820 1820 152 141 3 chr3 30869630 30869993 -128729790 - MTC LTR MaLR -8 413 1 6 820 3709 173 50 14 chr3 30869993 30870767 -128729016 - MTC-int LTR MaLR 0 1258 457 6 820 928 204 87 118 chr3 30870783 30871204 -128728579 - MT2A LTR ERVL -55 546 2 6 820 1059 55 0 20 chr3 30872227 30872376 -128727407 + B1_Mus1 SINE Alu 3 148 0 6 820 272 275 43 60 chr3 30872400 30872516 -128727267 + MTD LTR MaLR 45 158 -261 6 820 279 191 0 0 chr3 30872518 30872586 -128727197 + CT-rich Low_complexity Low_complexity 2 69 0 7 820 228 180 32 32 chr3 30872693 30872756 -128727027 + MLT1A1 LTR MaLR 342 404 -4 7 820 270 276 0 0 chr3 30872893 30872951 -128726832 + ID_B1 SINE B4 110 167 -57 7 820 1113 73 144 12 chr3 30872978 30873145 -128726638 + B2_Mm2 SINE B2 5 193 -2 7 820 31 0 0 0 chr3 30874080 30874111 -128725672 + AT_rich Low_complexity Low_complexity 1 31 0 7 820 253 387 30 0 chr3 30874145 30874313 -128725470 - MIRb SINE MIR -34 234 62 7 820 21 0 0 0 chr3 30874322 30874343 -128725440 + AT_rich Low_complexity Low_complexity 1 21 0 7 820 449 231 179 0 chr3 30874343 30874477 -128725306 - RSINE1 SINE B4 0 165 8 7 820 834 289 33 26 chr3 30874634 30875073 -128724710 - L1MB7 LINE L1 -19 6165 5724 7 820 396 252 31 23 chr3 30875113 30875243 -128724540 - B4A SINE B4 -161 131 1 7 820 202 56 27 27 chr3 30875249 30875286 -128724497 + (TTTA)n Simple_repeat Simple_repeat 4 40 0 7 820 417 333 8 0 chr3 30875294 30875426 -128724357 - RSINE1 SINE B4 -30 135 3 7 820 300 207 252 0 chr3 30875436 30875547 -128724236 - L1M4 LINE L1 -717 5462 5324 7 820 252 86 0 0 chr3 30875587 30875622 -128724161 + (TTTG)n Simple_repeat Simple_repeat 1 35 0 7 820 576 184 160 0 chr3 30875623 30875748 -128724035 - B1_Mus2 SINE Alu 0 147 3 7 820 905 233 33 65 chr3 30875758 30876034 -128723749 - L1M4 LINE L1 -1019 5127 4861 7 820 288 0 0 0 chr3 30876128 30876160 -128723623 + (TG)n Simple_repeat Simple_repeat 1 32 0 7 820 192 40 0 0 chr3 30876752 30876777 -128723006 + (TTG)n Simple_repeat Simple_repeat 3 27 0 7 820 1156 82 7 0 chr3 30876777 30876924 -128722859 - B1_Mus1 SINE Alu 0 148 1 7 820 3592 103 10 8 chr3 30877018 30877527 -128722256 + L1_Mur2 LINE L1 5207 5716 -161 7 820 249 250 74 82 chr3 30877527 30877662 -128722121 + RLTR25A LTR ERVK 439 572 -531 7 820 849 68 0 0 chr3 30877590 30877701 -128722082 + B1_Mm SINE Alu 27 137 -10 7 820 279 0 0 0 chr3 30877701 30877732 -128722051 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 7 820 1717 292 155 19 chr3 30877738 30877840 -128721943 + Lx4A LINE L1 5796 5899 -1098 7 820 1407 46 80 0 chr3 30877840 30877855 -128721928 - B2_Mm1t SINE B2 -3 190 176 7 820 207 0 0 0 chr3 30877855 30877878 -128721905 + (TTTA)n Simple_repeat Simple_repeat 3 25 0 7 820 1407 46 80 0 chr3 30877878 30878037 -128721746 - B2_Mm1t SINE B2 -18 175 3 7 820 6450 124 44 16 chr3 30878037 30879087 -128720696 + Lx4A LINE L1 5900 7056 -2 7 820 23 54 0 0 chr3 30879087 30879124 -128720659 + AT_rich Low_complexity Low_complexity 1 37 0 7 820 246 263 0 0 chr3 30879156 30879213 -128720570 - PB1D9 SINE Alu -13 107 51 7 820 263 226 113 0 chr3 30879269 30879331 -128720452 + ID4_ SINE ID 5 73 -10 7 820 267 152 0 0 chr3 30879331 30879377 -128720406 + GA-rich Low_complexity Low_complexity 4 49 0 7 820 936 145 0 0 chr3 30879536 30879681 -128720102 - B1_Mus2 SINE Alu -2 145 1 7 820 252 330 19 9 chr3 30879849 30879956 -128719827 + MER5A1 DNA MER1_type 9 116 -50 7 820 1207 48 7 0 chr3 30879981 30880128 -128719655 - B1_Mus1 SINE Alu 0 148 1 7 820 659 264 0 20 chr3 30880211 30880358 -128719425 + B4 SINE B4 8 151 -141 7 820 405 0 0 0 chr3 30880464 30880509 -128719274 + (CA)n Simple_repeat Simple_repeat 2 46 0 7 820 405 0 0 0 chr3 30880509 30880553 -128719230 + (GA)n Simple_repeat Simple_repeat 2 46 0 7 820 348 255 28 28 chr3 30880717 30880826 -128718957 + RSINE1 SINE B4 28 136 -29 7 820 3049 147 22 50 chr3 30880835 30881379 -128718404 + RMER1B Other Other 533 1061 -5 7 820 2449 152 162 40 chr3 30881655 30882160 -128717623 + RMER2 LTR ERV1 1 567 0 7 820 570 221 134 32 chr3 30882762 30882949 -128716834 - B3 SINE B2 -10 206 1 7 820 697 273 22 27 chr3 30882959 30883115 -128716668 - ID_B1 SINE B4 -2 222 68 7 820 950 295 25 66 chr3 30883115 30883510 -128716273 + MTE2a LTR MaLR 1 379 0 7 820 697 273 22 27 chr3 30883510 30883575 -128716208 - ID SINE ID -157 67 2 7 820 369 125 0 0 chr3 30883610 30883666 -128716117 - ORR1B1 LTR MaLR 0 394 339 7 820 566 86 86 0 chr3 30883667 30883760 -128716023 - RLTR13A3 LTR ERVK 0 978 878 7 820 16074 60 57 23 chr3 30883760 30886125 -128713658 - ETnERV3-int LTR ERVK -3174 2634 2 7 820 611 54 21 11 chr3 30886127 30886221 -128713562 - RLTR13A3 LTR ERVK 0 978 884 7 820 826 59 17 0 chr3 30886204 30886323 -128713460 + RLTR13A3 LTR ERVK 858 978 0 7 820 1443 144 171 0 chr3 30886323 30886617 -128713166 - ORR1B1 LTR MaLR -49 345 1 7 820 323 217 14 0 chr3 30887491 30887560 -128712223 + tRNA-Ala-GCY_ tRNA tRNA 3 72 -3 7 820 1243 48 0 0 chr3 30887653 30887800 -128711983 - B1_Mus1 SINE Alu 0 148 2 7 820 288 0 0 0 chr3 30887817 30887849 -128711934 + (TC)n Simple_repeat Simple_repeat 2 33 0 7 820 198 0 0 0 chr3 30887849 30887870 -128711913 + (TG)n Simple_repeat Simple_repeat 1 22 0 7 820 279 0 0 0 chr3 30888273 30888304 -128711479 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 7 820 511 206 10 0 chr3 30888304 30888406 -128711377 - B1_Mur2 SINE Alu -11 138 36 7 820 915 278 76 27 chr3 30888450 30888712 -128711071 + B4 SINE B4 16 290 -2 7 820 333 244 11 23 chr3 30888769 30888857 -128710926 - MurSatRep1 Unknown Unknown -1902 235 149 7 820 315 0 0 0 chr3 30888860 30888895 -128710888 + (CCAA)n Simple_repeat Simple_repeat 2 36 0 7 820 35 0 0 0 chr3 30889123 30889158 -128710625 + AT_rich Low_complexity Low_complexity 1 35 0 7 820 456 129 81 12 chr3 30889249 30889335 -128710448 - B1_Mur4 SINE Alu -55 95 4 7 820 912 259 4 26 chr3 30889355 30889581 -128710202 - MTEb LTR MaLR -154 225 5 7 820 773 274 83 71 chr3 30889589 30889763 -128710020 + L1MB7 LINE L1 4270 4448 -1698 7 820 920 149 0 33 chr3 30889763 30889916 -128709867 + B1_Mur4 SINE Alu 3 150 0 7 820 773 274 83 71 chr3 30889916 30890150 -128709633 + L1MB7 LINE L1 4449 4683 -1463 7 820 506 189 11 0 chr3 30890199 30890289 -128709494 + 4.5SRNA scRNA scRNA 1 91 -3 7 820 937 137 0 20 chr3 30890289 30890438 -128709345 + B1_Mus1 SINE Alu 2 147 -1 7 820 441 279 78 72 chr3 30890481 30890685 -128709098 + L1MB7 LINE L1 5107 5307 -867 7 820 1142 111 71 11 chr3 30890685 30890868 -128708915 + B2_Mm2 SINE B2 1 194 -1 7 820 441 292 69 23 chr3 30890868 30891037 -128708746 + L1MB7 LINE L1 5308 5489 -685 7 820 432 287 14 27 chr3 30891038 30891185 -128708598 + RSINE1 SINE B4 4 148 -17 7 820 240 203 116 0 chr3 30891271 30891340 -128708443 + L1MB7 LINE L1 5547 5623 -561 7 820 891 292 80 11 chr3 30891519 30891882 -128707901 + L1MB7 LINE L1 5797 6184 0 7 820 327 296 0 0 chr3 30891989 30892070 -128707713 - PB1 SINE Alu -36 91 11 7 820 1547 189 28 50 chr3 30892114 30892476 -128707307 + ORR1B1 LTR MaLR 41 394 0 7 820 1006 238 28 5 chr3 30892625 30892836 -128706947 - B3 SINE B2 0 216 1 7 820 297 0 0 0 chr3 30892878 30892911 -128706872 + (TG)n Simple_repeat Simple_repeat 2 34 0 7 820 742 207 109 4 chr3 30893208 30893382 -128706401 + B3 SINE B2 5 189 -6 7 820 551 196 96 22 chr3 30893579 30893715 -128706068 + B1_Mus1 SINE Alu 2 147 -1 7 820 21 36 0 0 chr3 30894844 30894872 -128704911 + GC_rich Low_complexity Low_complexity 1 28 0 7 820 24 32 0 0 chr3 30896061 30896092 -128703691 + AT_rich Low_complexity Low_complexity 1 31 0 7 820 805 148 229 0 chr3 30896238 30896421 -128703362 - URR1B DNA MER1_type 0 225 1 7 820 478 303 40 0 chr3 30896684 30896859 -128702924 + B3A SINE B2 1 182 -16 7 820 189 107 0 0 chr3 30896859 30896887 -128702896 + (TG)n Simple_repeat Simple_repeat 1 28 0 7 820 1333 58 6 22 chr3 30896929 30897107 -128702676 - B2_Mm2 SINE B2 -19 176 2 7 820 506 246 191 5 chr3 30897887 30898075 -128701708 + ID_B1 SINE B4 1 223 -1 7 820 856 240 35 10 chr3 30898841 30899043 -128700740 + ID_B1 SINE B4 1 207 -17 7 820 316 258 32 0 chr3 30899254 30899347 -128700436 - B1F1 SINE Alu -37 112 17 7 820 600 286 80 5 chr3 30899412 30899612 -128700171 - ID_B1 SINE B4 -3 221 7 7 820 307 326 80 89 chr3 30900062 30900412 -128699371 - ORR1E LTR MaLR -5 354 8 7 820 316 299 28 0 chr3 30900455 30900562 -128699221 - PB1 SINE Alu -17 110 1 7 820 504 232 62 0 chr3 30900582 30900694 -128699089 - PB1D9 SINE Alu 0 120 2 7 820 972 220 9 5 chr3 30901213 30901428 -128698355 - B3 SINE B2 0 216 1 7 820 600 280 24 1 chr3 30901627 30901827 -128697956 - L1MA4 LINE L1 -373 5927 5714 7 820 244 203 125 0 chr3 30901827 30901891 -128697892 + ORR1C1 LTR MaLR 1 72 -322 7 820 545 58 93 0 chr3 30901889 30901975 -128697808 - ORR1B1-int LTR MaLR -1415 94 1 7 820 1220 121 62 9 chr3 30901980 30902277 -128697506 - ORR1B1 LTR MaLR -36 358 1 7 820 930 152 119 35 chr3 30902339 30902625 -128697158 + RLTR20A1 LTR ERVK 1 312 -222 7 820 791 204 6 24 chr3 30902617 30902783 -128697000 + RLTR20A1 LTR ERVK 416 578 0 7 820 1499 156 51 4 chr3 30902783 30903058 -128696725 + ORR1C1 LTR MaLR 91 378 0 7 820 1293 105 26 5 chr3 30903105 30903296 -128696487 - B2_Mm2 SINE B2 0 195 1 7 820 325 330 56 56 chr3 30903322 30903572 -128696211 - L1MA4 LINE L1 -572 5725 5476 7 820 225 0 0 0 chr3 30903576 30903601 -128696182 + (TTAA)n Simple_repeat Simple_repeat 2 26 0 7 820 243 173 151 4 chr3 30903601 30903676 -128696107 - B1_Mus1 SINE Alu -2 115 30 7 820 670 213 63 42 chr3 30903683 30903874 -128695909 - B3A SINE B2 -2 196 2 7 820 609 284 68 25 chr3 30903881 30904365 -128695418 - L1_Rod LINE L1 -690 5484 4922 7 820 662 240 45 0 chr3 30904416 30904570 -128695213 - RSINE1 SINE B4 0 165 5 7 820 1228 234 115 59 chr3 30904688 30905211 -128694572 - Lx9 LINE L1 -2 7642 7091 7 820 382 287 122 57 chr3 30905287 30905760 -128694023 - L1MA4 LINE L1 -1353 4790 4283 7 820 1859 198 127 16 chr3 30905849 30906346 -128693437 + RLTR12A LTR ERVK 1 552 -16 7 820 203 162 27 0 chr3 30906494 30906531 -128693252 + (TG)n Simple_repeat Simple_repeat 1 38 0 7 820 563 287 58 89 chr3 30906545 30906836 -128692947 - B4A SINE B4 -6 286 5 7 820 1204 294 128 19 chr3 30906861 30907580 -128692203 - L1MA4 LINE L1 -2167 3976 3046 7 820 751 126 163 16 chr3 30907580 30907709 -128692074 - B1_Mur4 SINE Alu -1 149 2 7 820 254 292 161 34 chr3 30907709 30907949 -128691834 - L1MA4 LINE L1 -3098 3045 2753 7 820 4149 82 0 0 chr3 30907949 30908487 -128691296 - L1Md_T LINE L1 0 6582 6045 7 820 254 292 161 34 chr3 30908487 30908692 -128691091 - L1MA4 LINE L1 -3391 2752 2539 7 820 1300 126 156 123 chr3 30908692 30909089 -128690694 + RMER17C LTR ERVK 1 410 0 8 820 254 292 161 34 chr3 30909089 30909186 -128690597 - L1MA4 LINE L1 -3605 2538 2439 7 820 387 0 0 0 chr3 30909188 30909231 -128690552 + (TCCA)n Simple_repeat Simple_repeat 2 44 0 8 820 248 266 50 12 chr3 30909237 30909317 -128690466 - ID_B1 SINE B4 -19 205 123 8 820 607 227 87 38 chr3 30909385 30909568 -128690215 - B3 SINE B2 -19 197 6 8 820 224 259 35 0 chr3 30909567 30909625 -128690158 - ID SINE ID -164 60 1 8 820 404 271 64 0 chr3 30909629 30909769 -128690014 - L1_Mur3 LINE L1 -3471 2409 2261 8 820 342 0 0 0 chr3 30909783 30909821 -128689962 + (CA)n Simple_repeat Simple_repeat 2 39 0 8 820 1087 42 27 27 chr3 30910299 30910446 -128689337 - B1_Mus2 SINE Alu 0 147 1 8 820 923 238 23 37 chr3 30910493 30910707 -128689076 - B3 SINE B2 -5 211 1 8 820 378 156 0 0 chr3 30910812 30910887 -128688896 - B1_Mur4 SINE Alu -58 91 17 8 820 1263 77 60 11 chr3 30911299 30911482 -128688301 - B2_Mm2 SINE B2 0 195 4 8 820 303 222 23 0 chr3 30912014 30912090 -128687693 + PB1D10 SINE Alu 9 88 -32 8 820 22 35 0 0 chr3 30912487 30912516 -128687267 + AT_rich Low_complexity Low_complexity 1 29 0 8 820 338 243 0 0 chr3 30912575 30912645 -128687138 + ID4_ SINE ID 12 81 -2 8 820 343 261 109 29 chr3 30912663 30912801 -128686982 - MIR SINE MIR -66 196 48 8 820 207 139 0 0 chr3 30913045 30913081 -128686702 + (TG)n Simple_repeat Simple_repeat 1 36 0 8 820 740 172 157 27 chr3 30913178 30913363 -128686420 - B3 SINE B2 -6 210 2 8 820 605 205 111 50 chr3 30913368 30913548 -128686235 - B3A SINE B2 -6 192 2 8 820 256 251 221 74 chr3 30913666 30913937 -128685846 + MLT1A0 LTR MaLR 6 316 -49 8 820 266 331 123 8 chr3 30914147 30914269 -128685514 - MLT1A1 LTR MaLR -74 334 199 8 820 2395 215 175 5 chr3 30914517 30915284 -128684499 - Lx7 LINE L1 0 7696 6799 8 820 225 149 64 0 chr3 30915278 30915325 -128684458 + Lx7 LINE L1 7628 7677 -19 8 820 1612 246 25 20 chr3 30915724 30916213 -128683570 + RMER5 LTR ERV1 33 523 -11 8 820 212 0 36 0 chr3 30916276 30916304 -128683479 + (CAA)n Simple_repeat Simple_repeat 2 30 0 8 820 306 300 0 0 chr3 30916450 30916530 -128683253 - MTE2a LTR MaLR 0 379 300 8 820 211 111 28 0 chr3 30917603 30917639 -128682144 + (CGGG)n Simple_repeat Simple_repeat 2 38 0 8 820 877 45 0 0 chr3 30917878 30917990 -128681793 - B2_Mm2 SINE B2 -82 113 2 8 820 268 143 34 51 chr3 30918314 30918373 -128681410 + B3 SINE B2 60 117 -99 8 820 182 37 0 36 chr3 30918525 30918553 -128681230 + (CCCCCA)n Simple_repeat Simple_repeat 3 29 0 8 820 674 236 51 0 chr3 30918760 30918917 -128680866 - B3 SINE B2 -8 208 44 8 820 3782 204 139 39 chr3 30918911 30920147 -128679636 + ORR1D-int LTR MaLR 11 1370 0 8 820 755 204 30 0 chr3 30921176 30921359 -128678424 + B3 SINE B2 1 198 0 8 820 307 265 165 75 chr3 30922116 30922328 -128677455 + Lx8 LINE L1 6924 7154 -319 8 820 826 224 48 24 chr3 30922510 30922720 -128677063 + B3 SINE B2 1 215 -1 8 820 588 179 28 28 chr3 30922836 30922980 -128676803 - RLTR23 LTR ERV1 0 430 287 8 820 407 19 19 0 chr3 30923006 30923058 -128676725 + (TG)n Simple_repeat Simple_repeat 1 53 0 8 820 409 115 74 84 chr3 30923163 30923258 -128676525 - RLTR23 LTR ERV1 -336 94 1 8 820 595 234 27 20 chr3 30923335 30923483 -128676300 + B1F SINE Alu 1 149 0 8 820 430 179 24 0 chr3 30923649 30923772 -128676011 + CT-rich Low_complexity Low_complexity 1 126 0 8 820 423 56 0 0 chr3 30923772 30923826 -128675957 + (TG)n Simple_repeat Simple_repeat 2 55 0 8 820 318 245 36 45 chr3 30924453 30924564 -128675219 + PB1D10 SINE Alu 4 113 -4 8 820 611 187 96 7 chr3 30925289 30925424 -128674359 - B1_Mm SINE Alu 0 147 1 8 820 1361 81 16 5 chr3 30925951 30926137 -128673646 - B2_Mm2 SINE B2 -7 188 1 8 820 310 115 0 32 chr3 30926538 30926601 -128673182 + (TA)n Simple_repeat Simple_repeat 1 61 0 8 820 540 218 206 0 chr3 30926985 30927150 -128672633 + B3 SINE B2 8 206 -10 8 820 224 311 26 51 chr3 30927190 30927268 -128672515 + ID4_ SINE ID 2 77 -6 8 820 23 0 0 0 chr3 30927479 30927502 -128672281 + AT_rich Low_complexity Low_complexity 1 23 0 8 820 305 197 29 29 chr3 30927608 30927676 -128672107 - B3A SINE B2 -86 112 45 8 820 553 244 133 30 chr3 30928963 30929166 -128670617 - MIR SINE MIR -1 261 38 8 820 225 309 44 35 chr3 30929188 30929302 -128670481 - B1F SINE Alu -6 143 29 8 820 599 182 40 0 chr3 30929718 30929844 -128669939 - B1_Mur1 SINE Alu 0 149 19 8 820 505 167 59 0 chr3 30929872 30929974 -128669809 - PB1D9 SINE Alu -12 108 1 8 820 256 259 243 7 chr3 30930296 30930444 -128669339 - L1M5 LINE L1 -339 5785 5603 8 820 544 248 135 10 chr3 30930538 30930746 -128669037 - MTD LTR MaLR -36 383 150 8 820 354 287 94 89 chr3 30931028 30931388 -128668395 + MTE2a LTR MaLR 6 367 -12 8 820 228 67 0 0 chr3 30932224 30932254 -128667529 + (TTCC)n Simple_repeat Simple_repeat 4 33 0 8 820 796 97 161 0 chr3 30932258 30932382 -128667401 - B1_Mur4 SINE Alu -6 144 1 8 821 417 138 25 12 chr3 30933184 30933265 -128666518 - B1_Mus1 SINE Alu -64 84 3 8 821 293 202 20 92 chr3 30933265 30933280 -128666503 - MT2B LTR ERVL -359 240 152 8 821 36 40 0 0 chr3 30933354 30933404 -128666379 + AT_rich Low_complexity Low_complexity 1 50 0 8 821 1441 74 16 0 chr3 30933556 30933746 -128666037 + B2_Mm1a SINE B2 1 193 0 8 821 34 65 0 0 chr3 30933823 30933885 -128665898 + AT_rich Low_complexity Low_complexity 1 62 0 8 821 212 310 59 17 chr3 30934068 30934186 -128665597 - RSINE1 SINE B4 -15 150 28 8 821 303 289 81 32 chr3 30934258 30934444 -128665339 - B3A SINE B2 -2 196 2 8 821 1329 107 21 0 chr3 30934834 30935021 -128664762 - B2_Mm2 SINE B2 -4 191 1 8 821 498 260 16 0 chr3 30935122 30935245 -128664538 - ID_B1 SINE B4 -16 208 84 8 821 649 144 16 0 chr3 30935277 30935390 -128664393 + CT-rich Low_complexity Low_complexity 14 128 0 8 821 1272 34 0 0 chr3 30935390 30935537 -128664246 - B1_Mus2 SINE Alu 0 147 1 8 821 649 144 16 0 chr3 30935537 30935548 -128664235 + polypyrimidine Low_complexity Low_complexity 3 13 0 8 821 224 255 70 43 chr3 30936226 30936341 -128663442 + B1F SINE Alu 23 140 -9 8 821 284 342 13 0 chr3 30936361 30936437 -128663346 + ID4 SINE ID 6 82 -1 8 821 226 219 0 0 chr3 30937034 30937075 -128662708 + (CA)n Simple_repeat Simple_repeat 1 41 0 8 821 251 246 0 0 chr3 30939423 30939484 -128660299 + PB1D10 SINE Alu 43 103 -14 8 821 511 261 26 21 chr3 30939621 30939769 -128660014 - PB1D10 SINE Alu 0 149 7 8 821 387 287 46 0 chr3 30939683 30939791 -128659992 - ID_B1 SINE B4 -49 175 63 8 821 264 30 0 0 chr3 30940956 30940989 -128658794 + (TTCC)n Simple_repeat Simple_repeat 2 34 0 8 821 584 190 35 0 chr3 30940997 30941113 -128658670 - B1_Mur3 SINE Alu -12 137 18 8 821 838 280 150 33 chr3 30941147 30941607 -128658176 - Lx8 LINE L1 0 7473 6953 8 821 3242 133 155 20 chr3 30941607 30942214 -128657569 - RLTR17 LTR ERVK 0 692 4 8 821 838 280 150 33 chr3 30942214 30942241 -128657542 - Lx8 LINE L1 -521 6952 6929 8 821 1434 53 42 11 chr3 30942356 30942545 -128657238 + B2_Mm2 SINE B2 1 195 0 8 821 203 266 47 0 chr3 30943507 30943571 -128656212 - MIR SINE MIR -50 212 146 8 821 646 217 160 0 chr3 30944502 30944677 -128655106 - B3 SINE B2 -13 203 1 8 821 235 147 0 0 chr3 30945132 30945166 -128654617 - ID_B1 SINE B4 -8 216 183 8 821 407 219 14 0 chr3 30946198 30946271 -128653512 - MIRb SINE MIR -79 189 116 8 821 180 319 139 17 chr3 30947499 30947614 -128652169 + MIRc SINE MIR 6 134 -134 8 821 582 198 91 0 chr3 30948556 30948677 -128651106 + B4A SINE B4 1 132 -160 8 821 32 26 0 0 chr3 30949709 30949748 -128650035 + AT_rich Low_complexity Low_complexity 1 39 0 8 821 22 0 0 0 chr3 30950018 30950040 -128649743 + AT_rich Low_complexity Low_complexity 1 22 0 8 821 25 0 0 0 chr3 30950369 30950394 -128649389 + AT_rich Low_complexity Low_complexity 1 25 0 8 821 23 68 0 0 chr3 30951612 30951656 -128648127 + AT_rich Low_complexity Low_complexity 1 44 0 8 821 1429 55 66 0 chr3 30951699 30951881 -128647902 + B2_Mm2 SINE B2 2 195 0 8 821 885 43 0 0 chr3 30951881 30951996 -128647787 + B1_Mm SINE Alu 2 116 -31 8 821 282 279 45 23 chr3 30951925 30952013 -128647770 + RLTR25A LTR ERVK 522 611 -492 8 821 248 154 0 19 chr3 30952297 30952350 -128647433 + (CA)n Simple_repeat Simple_repeat 1 52 0 8 821 933 308 95 17 chr3 30953025 30953529 -128646254 + L1MA6 LINE L1 5315 5829 -471 8 821 216 143 0 0 chr3 30953665 30953707 -128646076 + (T)n Simple_repeat Simple_repeat 1 42 0 8 821 1205 47 0 20 chr3 30953707 30953858 -128645925 - B1_Mus1 SINE Alu 0 148 1 8 821 348 293 63 24 chr3 30954132 30954258 -128645525 + ID_B1 SINE B4 81 211 -13 8 821 510 279 8 0 chr3 30954272 30954401 -128645382 + RSINE1 SINE B4 8 137 -28 8 821 249 266 49 107 chr3 30954527 30954649 -128645134 - B4 SINE B4 -2 290 176 8 821 1507 32 43 5 chr3 30954952 30955138 -128644645 - B2_Mm1a SINE B2 0 193 1 8 821 1008 256 217 66 chr3 30955150 30955632 -128644151 - Lx8 LINE L1 0 7473 6923 8 821 1232 82 70 21 chr3 30955632 30955818 -128643965 - B2_Mm2 SINE B2 0 195 1 9 821 269 236 62 54 chr3 30955818 30955876 -128643907 - Lx8 LINE L1 -551 6922 6860 8 821 210 71 0 0 chr3 30955876 30955904 -128643879 + (CAAA)n Simple_repeat Simple_repeat 4 31 0 9 821 25 31 0 0 chr3 30956815 30956847 -128642936 + AT_rich Low_complexity Low_complexity 1 32 0 9 821 798 248 69 19 chr3 30957058 30957269 -128642514 + B3 SINE B2 3 216 0 9 821 348 320 44 32 chr3 30957325 30957483 -128642300 - RSINE1 SINE B4 0 165 6 9 821 1188 68 0 0 chr3 30957507 30957654 -128642129 + B1_Mus1 SINE Alu 2 148 0 9 821 1232 107 0 6 chr3 30957982 30958151 -128641632 + B2_Mm2 SINE B2 2 169 -26 9 821 341 136 13 0 chr3 30958201 30958265 -128641518 + B2_Mm2 SINE B2 46 115 -83 9 821 1003 227 66 44 chr3 30958808 30958940 -128640843 + Lx8 LINE L1 6191 6325 -1148 9 821 444 37 0 0 chr3 30958940 30958994 -128640789 + (CA)n Simple_repeat Simple_repeat 2 55 0 9 821 1003 227 66 44 chr3 30958994 30959133 -128640650 + Lx8 LINE L1 6326 6467 -1006 9 821 307 128 0 0 chr3 30959374 30959421 -128640362 - 5S rRNA rRNA -32 89 43 9 821 1340 86 57 0 chr3 30959730 30959905 -128639878 - B2_Mm2 SINE B2 -10 185 1 9 821 22 0 0 0 chr3 30960742 30960764 -128639019 + AT_rich Low_complexity Low_complexity 1 22 0 9 821 890 226 14 37 chr3 30960768 30960984 -128638799 - B3 SINE B2 -5 211 1 9 821 1027 58 0 61 chr3 30961109 30961257 -128638526 - B1_Mm SINE Alu 0 147 9 9 821 245 186 117 17 chr3 30961397 30961457 -128638326 + MamGypLTR1d LTR Gypsy 244 309 -504 9 821 994 112 22 71 chr3 30961593 30961775 -128638008 + URR1B DNA MER1_type 29 201 -24 9 821 1195 101 31 21 chr3 30961777 30961970 -128637813 + B2_Mm2 SINE B2 1 195 0 9 821 23 0 0 0 chr3 30962258 30962281 -128637502 + AT_rich Low_complexity Low_complexity 1 23 0 9 821 1244 28 0 0 chr3 30962281 30962425 -128637358 + B1_Mm SINE Alu 1 144 -3 9 821 243 0 0 0 chr3 30962425 30962452 -128637331 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 9 821 891 171 14 0 chr3 30962622 30962768 -128637015 + B1_Mur4 SINE Alu 2 149 -1 9 821 243 0 0 0 chr3 30962837 30962864 -128636919 + (TTTTG)n Simple_repeat Simple_repeat 4 30 0 9 821 1206 50 0 0 chr3 30962866 30963007 -128636776 - B1_Mm SINE Alu -6 141 1 9 821 381 234 13 25 chr3 30963604 30963683 -128636100 - ID4 SINE ID -3 80 3 9 821 477 34 0 0 chr3 30963693 30963752 -128636031 + (TG)n Simple_repeat Simple_repeat 1 59 0 9 821 724 300 26 105 chr3 30963766 30963821 -128635962 - B4A SINE B4 -4 288 241 9 821 1092 107 82 27 chr3 30963821 30964004 -128635779 - B2_Mm2 SINE B2 -2 193 1 9 821 724 300 26 105 chr3 30964004 30964026 -128635757 - B4A SINE B4 -52 240 230 9 821 2533 83 3 3 chr3 30964026 30964353 -128635430 - ORR1A2 LTR MaLR 0 327 1 9 821 724 300 26 105 chr3 30964353 30964587 -128635196 - B4A SINE B4 -63 229 1 9 821 277 304 0 12 chr3 30965171 30965251 -128634532 + MLT1A1 LTR MaLR 297 375 -33 9 821 724 317 120 47 chr3 30965307 30965510 -128634273 + MER21B LTR ERV1 242 475 -388 9 821 216 67 0 0 chr3 30965510 30965540 -128634243 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 9 821 704 252 36 68 chr3 30965543 30965764 -128634019 - ID_B1 SINE B4 -10 214 1 9 821 724 317 120 47 chr3 30965764 30966049 -128633734 + MER21B LTR ERV1 476 769 -94 9 821 568 259 7 7 chr3 30966220 30966368 -128633415 - B1_Mur2 SINE Alu -1 148 1 9 821 3448 52 30 16 chr3 30966452 30966882 -128632901 - RLTR10C LTR ERVK 0 436 1 9 821 242 300 0 0 chr3 30966902 30966972 -128632811 - ID4 SINE ID -12 71 2 9 821 242 299 58 45 chr3 30966972 30967126 -128632657 - RLTR25B LTR ERVK -424 604 449 9 821 898 254 56 0 chr3 30967040 30967237 -128632546 - ID_B1 SINE B4 -8 216 9 9 821 42 30 0 15 chr3 30967876 30967911 -128631872 + AT_rich Low_complexity Low_complexity 1 35 0 9 821 1545 48 0 11 chr3 30967911 30968102 -128631681 - B2_Mm1a SINE B2 -4 189 1 9 821 42 30 0 15 chr3 30968102 30968133 -128631650 + AT_rich Low_complexity Low_complexity 1 31 0 9 821 1193 68 0 0 chr3 30968193 30968339 -128631444 + B1_Mus2 SINE Alu 2 147 0 9 821 345 140 0 0 chr3 30968339 30968396 -128631387 + (GAAAA)n Simple_repeat Simple_repeat 4 60 0 9 821 828 57 0 0 chr3 30968915 30969021 -128630762 - B1_Mus2 SINE Alu 0 147 42 9 821 292 148 112 56 chr3 30968958 30969065 -128630718 - RLTR25B LTR ERVK -519 509 397 9 821 216 0 316 0 chr3 30969068 30969182 -128630601 + (CCTG)n Simple_repeat Simple_repeat 2 151 0 9 821 395 0 0 163 chr3 30969150 30969581 -128630202 + (CTCTG)n Simple_repeat Simple_repeat 1 360 0 9 821 371 102 0 33 chr3 30969583 30969644 -128630139 - PB1D9 SINE Alu -61 59 1 9 821 844 284 118 4 chr3 30970757 30971019 -128628764 + B4 SINE B4 1 292 0 9 821 367 191 138 0 chr3 30971610 30971704 -128628079 + RSINE1 SINE B4 40 146 -19 9 821 224 274 16 0 chr3 30972164 30972226 -128627557 + CT-rich Low_complexity Low_complexity 4 66 0 9 821 619 225 162 0 chr3 30972371 30972513 -128627270 + MTEa LTR MaLR 1 165 -214 9 821 316 342 42 8 chr3 30972549 30972667 -128627116 + RSINE1 SINE B4 44 165 0 9 821 332 150 12 0 chr3 30972668 30972748 -128627035 + (CA)n Simple_repeat Simple_repeat 2 82 0 9 821 1223 42 0 0 chr3 30972819 30972963 -128626820 + B1_Mm SINE Alu 2 145 -2 9 821 24 0 0 0 chr3 30972963 30972987 -128626796 + AT_rich Low_complexity Low_complexity 1 24 0 9 821 378 0 0 0 chr3 30973282 30973324 -128626459 + (TTA)n Simple_repeat Simple_repeat 1 42 0 9 821 708 156 96 0 chr3 30973325 30973460 -128626323 - B1_Mur4 SINE Alu -2 148 1 9 821 659 289 30 15 chr3 30973640 30973840 -128625943 - ID_B1 SINE B4 -7 217 15 9 821 218 254 36 0 chr3 30974537 30974592 -128625191 + GA-rich Low_complexity Low_complexity 5 61 0 9 821 225 232 163 47 chr3 30974595 30974681 -128625102 - LTR86B1 LTR ERVL -107 386 291 9 821 492 274 32 16 chr3 30975153 30975279 -128624504 + RSINE1 SINE B4 3 130 -35 9 821 301 325 0 0 chr3 30975839 30975919 -128623864 - ID4 SINE ID -1 82 3 9 821 218 276 0 73 chr3 30976428 30976510 -128623273 + CT-rich Low_complexity Low_complexity 3 78 0 9 821 227 204 0 58 chr3 30976452 30976504 -128623279 + polypyrimidine Low_complexity Low_complexity 4 52 0 9 821 952 272 12 20 chr3 30976956 30977207 -128622576 + B4A SINE B4 2 250 -42 9 821 246 250 13 65 chr3 30977246 30977323 -128622460 - RMER21B LTR ERV1 -113 834 762 9 821 718 226 233 23 chr3 30977331 30977580 -128622203 - RMER21B LTR ERV1 -277 565 263 9 821 399 215 90 23 chr3 30977580 30977600 -128622183 + B1_Mur1 SINE Alu 1 139 -10 9 821 316 278 88 124 chr3 30977600 30977709 -128622074 + B4A SINE B4 107 217 -75 9 821 198 0 0 0 chr3 30977709 30977731 -128622052 + (CAAG)n Simple_repeat Simple_repeat 2 23 0 9 821 316 278 88 124 chr3 30977731 30977793 -128621990 + B4A SINE B4 218 272 -20 9 821 1073 89 0 11 chr3 30977793 30977975 -128621808 + (CA)n Simple_repeat Simple_repeat 1 180 0 9 821 316 278 88 124 chr3 30977975 30977995 -128621788 + B4A SINE B4 273 291 -1 9 821 212 93 47 0 chr3 30977998 30978041 -128621742 + (CAGA)n Simple_repeat Simple_repeat 4 48 0 9 821 1092 89 0 0 chr3 30978041 30978385 -128621398 + (CA)n Simple_repeat Simple_repeat 1 344 0 9 821 468 99 0 0 chr3 30978694 30978765 -128621018 + (TG)n Simple_repeat Simple_repeat 1 71 0 9 821 351 0 0 0 chr3 30978865 30978904 -128620879 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 9 821 1157 58 0 0 chr3 30978904 30979042 -128620741 - B1_Mus1 SINE Alu -10 138 1 9 821 1343 96 5 0 chr3 30979346 30979533 -128620250 + B2_Mm1a SINE B2 2 189 -4 9 821 809 221 142 34 chr3 30979756 30979995 -128619788 + B4 SINE B4 8 272 -20 9 821 209 196 0 19 chr3 30980056 30980108 -128619675 + GA-rich Low_complexity Low_complexity 2 52 0 9 821 484 274 211 13 chr3 30980509 30980746 -128619037 - B4A SINE B4 -8 284 1 9 821 224 316 79 0 chr3 30980874 30980950 -128618833 - ID_B1 SINE B4 -131 93 12 9 821 854 132 27 27 chr3 30981025 30981173 -128618610 - B1_Mur4 SINE Alu -1 149 2 9 821 486 241 50 33 chr3 30981846 30981966 -128617817 + PB1 SINE Alu 1 122 -5 9 821 279 250 18 91 chr3 30981974 30982061 -128617722 + BC1_Mm scRNA scRNA 1 80 -72 9 821 1297 20 0 0 chr3 30982061 30982208 -128617575 + B1_Mm SINE Alu 1 147 0 9 821 279 250 18 91 chr3 30982208 30982230 -128617553 + BC1_Mm scRNA scRNA 81 102 -50 9 821 329 314 68 10 chr3 30982256 30982359 -128617424 + B4 SINE B4 176 284 -8 9 821 280 111 0 36 chr3 30982430 30982486 -128617297 + (TTCC)n Simple_repeat Simple_repeat 2 55 0 9 821 294 290 43 11 chr3 30982851 30982945 -128616838 - MamRep605 Unknown Unknown -139 737 641 9 821 302 336 82 0 chr3 30983036 30983170 -128616613 - MamRep605 Unknown Unknown -361 515 371 9 821 441 258 73 63 chr3 30983767 30983912 -128615871 - B3A SINE B2 0 216 69 9 821 268 317 39 29 chr3 30983934 30984038 -128615745 - B2_Mm2 SINE B2 -89 106 2 9 821 861 114 42 21 chr3 30984889 30985032 -128614751 + B1_Mus2 SINE Alu 1 146 -1 9 821 414 0 0 0 chr3 30985502 30985548 -128614235 + (TG)n Simple_repeat Simple_repeat 2 47 0 9 821 420 286 22 43 chr3 30985553 30985692 -128614091 - RSINE1 SINE B4 -29 136 1 9 821 1155 62 0 20 chr3 30985755 30985904 -128613879 + B1_Mus1 SINE Alu 1 146 -2 9 821 210 111 0 43 chr3 30985908 30985955 -128613828 + (CAAA)n Simple_repeat Simple_repeat 3 47 0 9 821 438 20 0 0 chr3 30985955 30986006 -128613777 + (GAAA)n Simple_repeat Simple_repeat 2 52 0 9 821 480 234 109 17 chr3 30986059 30986233 -128613550 + MIR SINE MIR 72 261 -1 9 821 385 299 34 62 chr3 30986313 30986339 -128613444 + ID_B1 SINE B4 70 211 -13 9 821 469 261 50 8 chr3 30986339 30986459 -128613324 + B1F2 SINE Alu 12 136 -13 9 821 329 263 13 0 chr3 30987005 30987081 -128612702 + B4 SINE B4 1 77 -215 9 821 501 278 0 0 chr3 30987123 30987231 -128612552 + B4 SINE B4 183 290 -2 9 821 1042 218 14 10 chr3 30987367 30987575 -128612208 + B3 SINE B2 1 209 -7 1 821 216 135 0 0 chr3 30987962 30987999 -128611784 + (CCCCCT)n Simple_repeat Simple_repeat 6 42 0 1 821 2610 112 80 9 chr3 30988160 30988583 -128611200 - RLTR11B LTR ERVK 0 453 1 1 821 1063 58 51 0 chr3 30988615 30988752 -128611031 + B1_Mus1 SINE Alu 3 146 -2 1 821 468 0 0 0 chr3 30988752 30988804 -128610979 + (CA)n Simple_repeat Simple_repeat 2 53 0 1 821 1445 184 90 15 chr3 30990519 30990828 -128608955 + ORR1C2 LTR MaLR 51 384 0 1 821 582 278 103 41 chr3 30990851 30991046 -128608737 - B3 SINE B2 -7 209 3 1 821 940 271 21 25 chr3 30991046 30991279 -128608504 - B4A SINE B4 -58 234 3 1 821 754 259 166 24 chr3 30991312 30991569 -128608214 - ID_B1 SINE B4 0 292 3 1 821 243 88 0 0 chr3 30992581 30992615 -128607168 + (A)n Simple_repeat Simple_repeat 1 34 0 1 821 186 43 0 0 chr3 30992900 30992923 -128606860 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 1 821 218 173 22 100 chr3 30993159 30993249 -128606534 + G-rich Low_complexity Low_complexity 4 86 0 1 821 24 53 0 0 chr3 30993305 30993343 -128606440 + GC_rich Low_complexity Low_complexity 1 38 0 1 821 25 65 0 0 chr3 30993443 30993489 -128606294 + GC_rich Low_complexity Low_complexity 1 46 0 1 821 28 61 0 0 chr3 30993808 30993857 -128605926 + GC_rich Low_complexity Low_complexity 1 49 0 1 821 261 269 14 29 chr3 30994020 30994158 -128605625 + (CGG)n Simple_repeat Simple_repeat 3 138 0 1 821 241 216 20 0 chr3 30997507 30997558 -128602225 - MIRb SINE MIR -95 173 122 1 821 21 0 0 0 chr3 30998349 30998370 -128601413 + AT_rich Low_complexity Low_complexity 1 21 0 1 821 660 171 68 0 chr3 30999711 30999828 -128599955 - B3 SINE B2 -86 130 6 1 821 636 258 143 0 chr3 31000064 31000246 -128599537 + ID_B1 SINE B4 17 224 0 1 821 739 211 133 6 chr3 31000626 31000807 -128598976 + B3 SINE B2 2 205 -11 2 821 23 0 0 0 chr3 31001224 31001247 -128598536 + AT_rich Low_complexity Low_complexity 1 23 0 3 821 625 133 80 0 chr3 31001302 31001415 -128598368 - B1_Mus1 SINE Alu -25 123 2 4 821 293 247 12 47 chr3 31001339 31001424 -128598359 - B4A SINE B4 -129 163 82 5 821 230 205 49 37 chr3 31002187 31002268 -128597515 + Charlie9 DNA MER1_type 37 118 -2639 6 821 21 0 0 0 chr3 31002384 31002405 -128597378 + AT_rich Low_complexity Low_complexity 1 21 0 7 821 353 278 76 28 chr3 31002406 31002617 -128597166 + L1MEc LINE L1 2247 2467 -3933 8 821 230 231 0 15 chr3 31002653 31002719 -128597064 + (TA)n Simple_repeat Simple_repeat 2 66 0 9 821 396 103 0 0 chr3 31002740 31002798 -128596985 + (CA)n Simple_repeat Simple_repeat 2 59 0 1 821 340 246 11 0 chr3 31002803 31002889 -128596894 + B3A SINE B2 5 95 -100 1 821 953 211 186 42 chr3 31003032 31003393 -128596390 + MTD LTR MaLR 6 418 -1 1 821 1259 20 0 39 chr3 31003548 31003702 -128596081 + B1_Mus1 SINE Alu 1 148 0 1 821 574 274 38 19 chr3 31004421 31004633 -128595150 - B3 SINE B2 0 216 1 1 821 358 262 38 19 chr3 31004679 31004784 -128594999 + RSINE1 SINE B4 2 108 -57 1 821 212 22 65 22 chr3 31004796 31004842 -128594941 + (TTTTG)n Simple_repeat Simple_repeat 3 50 0 1 821 907 23 0 136 chr3 31004843 31004997 -128594786 - B1_Mm SINE Alu 0 147 15 1 821 25 0 0 0 chr3 31005188 31005213 -128594570 + AT_rich Low_complexity Low_complexity 1 25 0 1 821 1221 61 0 0 chr3 31005281 31005428 -128594355 + B1_Mm SINE Alu 1 147 0 1 821 585 86 0 0 chr3 31005454 31005547 -128594236 + (CA)n Simple_repeat Simple_repeat 2 94 0 2 821 22 0 0 0 chr3 31005809 31005831 -128593952 + AT_rich Low_complexity Low_complexity 1 22 0 2 821 539 264 263 27 chr3 31006838 31007176 -128592607 + MTD LTR MaLR 1 418 -1 2 821 522 242 2 0 chr3 31007321 31007429 -128592354 + B1_Mus2 SINE Alu 1 110 -10 2 821 708 250 17 23 chr3 31007891 31008063 -128591720 - B3 SINE B2 -10 206 36 2 821 745 163 14 21 chr3 31008584 31008728 -128591055 - B1_Mur4 SINE Alu 0 150 8 2 821 597 64 0 0 chr3 31008757 31008835 -128590948 + (TC)n Simple_repeat Simple_repeat 1 78 0 2 821 22 80 0 0 chr3 31008877 31008927 -128590856 + AT_rich Low_complexity Low_complexity 1 50 0 2 821 592 244 14 49 chr3 31008945 31009087 -128590696 - RSINE1 SINE B4 -21 144 8 2 821 238 269 30 0 chr3 31009438 31009505 -128590278 - ID4_ SINE ID -10 73 5 2 821 291 242 0 15 chr3 31010396 31010463 -128589320 + ID4_ SINE ID 2 67 -16 3 821 237 246 0 42 chr3 31010655 31010727 -128589056 + (TTTG)n Simple_repeat Simple_repeat 3 71 0 3 821 272 27 27 0 chr3 31010950 31010987 -128588796 + (TTTG)n Simple_repeat Simple_repeat 3 40 0 3 821 414 240 83 0 chr3 31010987 31011083 -128588700 - B1_Mur1 SINE Alu -32 117 14 3 821 230 288 25 88 chr3 31011012 31011092 -128588691 - MT2B LTR ERVL -360 241 167 3 821 670 224 62 50 chr3 31011351 31011530 -128588253 + Lx6 LINE L1 7167 7347 -113 3 821 390 200 0 66 chr3 31011906 31011997 -128587786 - B1F SINE Alu -9 140 56 3 821 254 278 101 87 chr3 31011997 31012044 -128587739 - ID_B1 SINE B4 -9 215 76 3 821 703 235 70 43 chr3 31013318 31013505 -128586278 + B3 SINE B2 1 192 -24 3 821 792 326 107 22 chr3 31013544 31014301 -128585482 - L1MB8 LINE L1 -49 6129 5309 3 821 287 266 173 39 chr3 31014392 31014646 -128585137 - L1MB8 LINE L1 -992 5154 4867 3 821 269 265 75 47 chr3 31014665 31014772 -128585011 - PB1D10 SINE Alu -7 110 1 4 821 304 227 71 10 chr3 31014870 31014968 -128584815 - U6 snRNA snRNA 0 107 4 4 821 412 302 194 53 chr3 31015078 31015305 -128584478 - B4 SINE B4 -4 288 30 4 821 687 240 188 27 chr3 31015310 31015683 -128584100 - L1MB8 LINE L1 -1366 4780 4348 3 821 518 150 292 0 chr3 31015999 31016112 -128583671 - B1_Mur4 SINE Alu -4 146 1 4 821 229 316 12 12 chr3 31016867 31016947 -128582836 + ID4_ SINE ID 2 81 -2 4 821 21 82 0 0 chr3 31018325 31018374 -128581409 + AT_rich Low_complexity Low_complexity 1 49 0 4 821 198 0 0 0 chr3 31020597 31020619 -128579164 + (T)n Simple_repeat Simple_repeat 1 22 0 4 821 595 229 211 6 chr3 31021587 31021758 -128578025 - B3 SINE B2 -10 206 1 4 821 728 163 73 15 chr3 31022146 31022283 -128577500 + B1_Mus2 SINE Alu 1 145 -2 4 821 253 322 44 11 chr3 31022295 31022386 -128577397 - MLT1F2 LTR MaLR -453 107 14 4 821 353 276 262 25 chr3 31022543 31023063 -128576720 - L1MB4 LINE L1 -211 5969 5327 5 821 1191 274 35 9 chr3 31023249 31023591 -128576192 - MTEa LTR MaLR -8 371 21 5 821 367 231 77 0 chr3 31023965 31024069 -128575714 - PB1D9 SINE Alu -6 114 3 5 821 714 258 110 9 chr3 31024122 31024458 -128575325 - L1MB4 LINE L1 -1501 4639 4270 5 821 288 0 0 0 chr3 31024458 31024490 -128575293 + (GA)n Simple_repeat Simple_repeat 1 32 0 5 821 680 289 106 55 chr3 31024504 31024926 -128574857 - L1MB4 LINE L1 -2632 3511 3034 5 821 232 228 227 38 chr3 31024926 31025058 -128574725 - RSINE1 SINE B4 -5 160 4 5 821 680 289 106 55 chr3 31025058 31025327 -128574456 - L1MB4 LINE L1 -3110 3033 2786 5 821 261 57 0 0 chr3 31025588 31025623 -128574160 + (TG)n Simple_repeat Simple_repeat 1 35 0 5 821 982 215 77 55 chr3 31025647 31026062 -128573721 - RLTR28B LTR ERVL -18 506 9 5 821 324 309 37 60 chr3 31026085 31026219 -128573564 - B3A SINE B2 -39 159 29 5 821 579 199 211 29 chr3 31026222 31026393 -128573390 + B3 SINE B2 1 202 -14 5 821 218 217 43 0 chr3 31026444 31026490 -128573293 + C-rich Low_complexity Low_complexity 1 48 0 5 821 241 213 0 0 chr3 31026650 31026697 -128573086 - PB1D10 SINE Alu 0 117 71 6 821 259 328 83 8 chr3 31026755 31026875 -128572908 - Lx8 LINE L1 -146 7327 7199 6 821 879 262 0 5 chr3 31026891 31027094 -128572689 + B3 SINE B2 5 206 -10 6 821 2770 276 30 65 chr3 31027119 31028065 -128571718 - Lx8 LINE L1 -354 7119 6208 6 821 265 263 132 0 chr3 31028739 31028815 -128570968 - ID_B1 SINE B4 0 224 139 6 821 414 0 0 0 chr3 31029294 31029340 -128570443 + (CA)n Simple_repeat Simple_repeat 2 47 0 6 821 1178 75 0 0 chr3 31029468 31029615 -128570168 - B1_Mus2 SINE Alu 0 147 1 6 821 21 0 0 0 chr3 31029786 31029807 -128569976 + AT_rich Low_complexity Low_complexity 1 21 0 6 821 27 0 0 0 chr3 31029962 31029989 -128569794 + AT_rich Low_complexity Low_complexity 1 27 0 6 821 573 156 47 15 chr3 31030348 31030496 -128569287 + ORR1D1 LTR MaLR 1 186 -188 6 821 214 259 8 8 chr3 31030496 31030613 -128569170 + CT-rich Low_complexity Low_complexity 1 117 0 6 821 285 259 74 0 chr3 31030613 31030694 -128569089 + ORR1D1 LTR MaLR 166 252 -122 6 821 730 283 114 9 chr3 31030842 31031167 -128568616 + ORR1E LTR MaLR 1 359 0 7 821 310 170 55 33 chr3 31031411 31031502 -128568281 - PB1D9 SINE Alu -1 119 27 7 821 259 306 104 67 chr3 31031503 31031773 -128568010 - L1MB4 LINE L1 -5378 1229 950 7 821 204 97 0 0 chr3 31031839 31031870 -128567913 + (A)n Simple_repeat Simple_repeat 1 31 0 7 821 312 271 73 67 chr3 31031983 31032183 -128567600 - L1MB4 LINE L1 -5896 711 534 7 821 352 171 0 24 chr3 31032183 31032267 -128567516 + CT-rich Low_complexity Low_complexity 4 85 0 7 821 645 233 15 0 chr3 31032269 31032402 -128567381 - ID_B1 SINE B4 -77 147 13 7 821 522 118 0 0 chr3 31032594 31032687 -128567096 + (TG)n Simple_repeat Simple_repeat 1 93 0 7 821 815 255 71 26 chr3 31032689 31032955 -128566828 - B4A SINE B4 -12 280 3 7 821 270 299 71 43 chr3 31033677 31033887 -128565896 - L1MB4 LINE L1 -6372 235 20 7 821 259 239 15 15 chr3 31034648 31034716 -128565067 + (TG)n Simple_repeat Simple_repeat 1 68 0 7 821 543 244 301 14 chr3 31034724 31034940 -128564843 - B4A SINE B4 -12 280 3 8 821 391 245 144 19 chr3 31035929 31036033 -128563750 - PB1D9 SINE Alu -2 118 2 8 821 258 32 0 0 chr3 31036042 31036073 -128563710 + (TTTG)n Simple_repeat Simple_repeat 3 33 0 8 821 1259 38 0 0 chr3 31036073 31036232 -128563551 - B2_Mm1a SINE B2 -33 160 2 8 821 554 226 105 22 chr3 31036251 31036432 -128563351 - B3A SINE B2 -2 196 1 8 821 440 189 13 32 chr3 31036648 31036806 -128562977 + (TG)n Simple_repeat Simple_repeat 2 156 0 8 821 366 347 101 13 chr3 31036824 31036973 -128562810 - RSINE1 SINE B4 -1 164 3 8 821 719 192 0 58 chr3 31037083 31037238 -128562545 + B1_Mus1 SINE Alu 1 146 -2 8 821 183 156 0 0 chr3 31037287 31037319 -128562464 + (CAG)n Simple_repeat Simple_repeat 1 32 0 8 821 672 232 29 78 chr3 31037476 31037682 -128562101 + B3A SINE B2 2 197 -1 8 821 597 81 0 0 chr3 31037708 31037795 -128561988 - L1_Mus3 LINE L1 -5 6633 6547 9 821 225 0 0 0 chr3 31037858 31037883 -128561900 + (T)n Simple_repeat Simple_repeat 1 25 0 9 821 335 3 0 5 chr3 31038033 31038084 -128561699 - B1_Mus2 SINE Alu 0 150 99 9 821 708 194 65 0 chr3 31038250 31038389 -128561394 + B1_Mur3 SINE Alu 1 148 -1 9 821 773 181 6 0 chr3 31038657 31038834 -128560949 + (CA)n Simple_repeat Simple_repeat 1 178 0 9 821 678 214 0 0 chr3 31038858 31039211 -128560572 + (CA)n Simple_repeat Simple_repeat 1 353 0 9 821 434 318 8 0 chr3 31039214 31039343 -128560440 - RSINE1 SINE B4 -32 133 4 9 821 1389 73 6 0 chr3 31039384 31039561 -128560222 - B2_Mm1t SINE B2 -14 179 2 9 821 374 277 35 18 chr3 31039718 31039832 -128559951 + PB1D7 SINE Alu 4 119 -1 9 821 544 242 72 19 chr3 31039916 31040108 -128559675 - B3A SINE B2 -2 193 8 9 821 281 268 34 43 chr3 31040435 31040552 -128559231 + Lx8 LINE L1 7352 7467 -6 9 821 247 268 0 0 chr3 31040663 31040719 -128559064 - PB1 SINE Alu -4 123 68 1 821 1646 36 5 0 chr3 31041037 31041229 -128558554 - B2_Mm1t SINE B2 0 193 1 1 821 349 36 54 0 chr3 31041428 31041484 -128558299 + (TA)n Simple_repeat Simple_repeat 2 60 0 1 821 724 33 52 55 chr3 31041486 31041784 -128557999 + (TTATA)n Simple_repeat Simple_repeat 1 296 0 1 821 213 39 0 0 chr3 31041815 31041841 -128557942 + (TA)n Simple_repeat Simple_repeat 2 27 0 1 821 1377 63 17 0 chr3 31041841 31042016 -128557767 - B2_Mm2 SINE B2 -17 178 1 1 821 1029 129 0 0 chr3 31042055 31042194 -128557589 - B1_Mur4 SINE Alu -10 140 2 1 821 7088 124 19 3 chr3 31042351 31043995 -128555788 + Lx LINE L1 4997 6654 0 1 821 1279 34 0 0 chr3 31044081 31044228 -128555555 - B1_Mm SINE Alu 0 147 1 1 821 189 0 0 0 chr3 31044279 31044300 -128555483 + (A)n Simple_repeat Simple_repeat 1 21 0 1 821 370 279 49 0 chr3 31044309 31044349 -128555434 + B3A SINE B2 1 41 -157 1 821 1385 87 32 0 chr3 31044349 31044534 -128555249 + B2_Mm1t SINE B2 2 192 -1 1 821 370 279 49 0 chr3 31044534 31044615 -128555168 + B3A SINE B2 42 127 -71 1 821 502 272 24 24 chr3 31044610 31044776 -128555007 + B4 SINE B4 127 292 0 1 821 288 48 0 23 chr3 31045268 31045311 -128554472 - U2 snRNA snRNA -146 42 1 1 821 387 60 0 0 chr3 31046179 31046229 -128553554 + (TG)n Simple_repeat Simple_repeat 1 50 0 1 821 510 238 49 7 chr3 31046750 31046894 -128552889 + RSINE1 SINE B4 6 155 -10 1 821 283 221 29 0 chr3 31047513 31047581 -128552202 + ID4 SINE ID 5 74 -9 1 821 205 162 0 0 chr3 31048090 31048127 -128551656 + (TG)n Simple_repeat Simple_repeat 1 37 0 1 821 378 270 83 87 chr3 31048129 31048417 -128551366 - B4A SINE B4 -3 289 3 1 821 183 100 0 0 chr3 31048550 31048580 -128551203 + (GA)n Simple_repeat Simple_repeat 1 30 0 1 821 211 28 56 0 chr3 31050073 31050109 -128549674 + (TGG)n Simple_repeat Simple_repeat 2 39 0 1 821 275 301 0 0 chr3 31050541 31050614 -128549169 - ID SINE ID -145 79 7 1 821 341 224 0 0 chr3 31052162 31052229 -128547554 + B1F SINE Alu 2 68 -81 1 821 448 284 86 43 chr3 31053841 31054003 -128545780 + ID_B1 SINE B4 52 220 -4 1 821 260 171 36 24 chr3 31054217 31054301 -128545482 - RMER17B LTR ERVK -499 459 375 1 821 704 227 0 6 chr3 31054309 31054486 -128545297 + CT-rich Low_complexity Low_complexity 2 177 0 1 821 1039 113 14 0 chr3 31054486 31054627 -128545156 - B1_Mur3 SINE Alu -6 143 1 1 821 262 217 33 0 chr3 31054732 31054792 -128544991 - RSINE1 SINE B4 -92 73 12 1 821 2296 24 9 76 chr3 31055499 31055816 -128543967 + L1Md_F3 LINE L1 6289 6584 0 1 821 909 57 186 0 chr3 31057343 31057467 -128542316 - B1_Mus2 SINE Alu 0 147 1 1 821 327 192 26 40 chr3 31057652 31057728 -128542055 - HAL1-3A_ME LINE L1 -808 2050 1976 1 821 237 65 0 0 chr3 31057730 31057761 -128542022 + (TG)n Simple_repeat Simple_repeat 1 31 0 1 821 655 280 77 39 chr3 31057802 31058062 -128541721 - B4A SINE B4 -21 271 2 1 821 1635 36 0 0 chr3 31058572 31058764 -128541019 + B2_Mm1a SINE B2 2 193 0 1 821 183 80 0 0 chr3 31059373 31059398 -128540385 + (TCCA)n Simple_repeat Simple_repeat 3 27 0 1 821 265 156 58 15 chr3 31060110 31060175 -128539608 + PB1 SINE Alu 76 150 0 1 821 305 306 88 15 chr3 31060708 31060844 -128538939 - MER3 DNA MER1_type -8 201 56 1 821 408 301 112 40 chr3 31060889 31061041 -128538742 + RSINE1 SINE B4 3 165 0 1 821 202 369 18 26 chr3 31061360 31061474 -128538309 - L2c LINE L2 -63 3324 3212 1 821 484 265 176 6 chr3 31061485 31061667 -128538116 + ID_B1 SINE B4 5 217 -7 1 821 415 327 100 83 chr3 31063349 31063475 -128536308 + B4A SINE B4 1 117 -175 1 821 396 0 0 0 chr3 31063475 31063519 -128536264 + (CA)n Simple_repeat Simple_repeat 1 44 0 1 821 415 327 100 83 chr3 31063519 31063622 -128536161 + B4A SINE B4 118 234 -58 1 821 694 197 45 8 chr3 31063628 31063761 -128536022 + B1_Mur4 SINE Alu 11 148 -2 1 821 306 0 0 0 chr3 31063768 31063802 -128535981 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 1 821 256 250 0 0 chr3 31063867 31063939 -128535844 + (CAGA)n Simple_repeat Simple_repeat 2 73 0 1 821 378 85 0 33 chr3 31063950 31064011 -128535772 + HAL1-3A_ME LINE L1 1976 2034 -824 1 822 745 313 70 13 chr3 31064176 31064474 -128535309 - MER33 DNA MER1_type -9 315 1 1 822 228 35 0 0 chr3 31067165 31067194 -128532589 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1 822 252 130 25 25 chr3 31067263 31067342 -128532441 + T-rich Low_complexity Low_complexity 2 80 0 1 822 960 207 29 10 chr3 31067345 31067557 -128532226 - RLTR20C LTR ERVK -103 438 230 1 822 180 356 13 27 chr3 31067776 31067851 -128531932 - L4 LINE RTE -1322 707 634 1 822 1412 89 16 5 chr3 31068161 31068354 -128531429 - B2_Mm2 SINE B2 0 195 1 1 822 420 20 0 0 chr3 31068465 31068514 -128531269 + (TG)n Simple_repeat Simple_repeat 1 49 0 1 822 516 287 70 0 chr3 31068514 31068643 -128531140 - RSINE1 SINE B4 -24 141 4 1 822 637 212 115 143 chr3 31070178 31070464 -128529319 - MTEb LTR MaLR 0 379 102 1 822 308 281 93 136 chr3 31070541 31070681 -128529102 - B1F SINE Alu -15 134 1 1 822 983 209 102 0 chr3 31070717 31070913 -128528870 + B3 SINE B2 1 216 0 1 822 522 0 0 0 chr3 31070927 31070985 -128528798 + (CAAAC)n Simple_repeat Simple_repeat 2 59 0 1 822 258 22 42 42 chr3 31070997 31071045 -128528738 + (TTTTTG)n Simple_repeat Simple_repeat 2 49 0 1 822 3313 57 38 5 chr3 31071490 31071910 -128527873 + L1Md_F2 LINE L1 6134 6567 -15 1 822 402 57 0 0 chr3 31071971 31072024 -128527759 + (TG)n Simple_repeat Simple_repeat 2 54 0 1 822 1797 192 42 105 chr3 31072052 31072277 -128527506 + MTC LTR MaLR 1 212 -209 1 822 1823 60 8 20 chr3 31072277 31072532 -128527251 + L1_Mus3 LINE L1 6386 6637 -1 1 822 1797 192 42 105 chr3 31072532 31072610 -128527173 + MTC LTR MaLR 213 287 -134 1 822 4940 103 25 23 chr3 31072610 31072752 -128527031 - RMER19A LTR ERVK 0 737 597 1 822 324 0 0 0 chr3 31072752 31072788 -128526995 + (TG)n Simple_repeat Simple_repeat 1 36 0 1 822 4940 103 25 23 chr3 31072788 31073381 -128526402 - RMER19A LTR ERVK -141 596 1 1 822 1797 192 42 105 chr3 31073381 31073525 -128526258 + MTC LTR MaLR 288 421 0 1 822 674 259 88 6 chr3 31073525 31073684 -128526099 - B4 SINE B4 -16 276 105 1 822 338 243 0 0 chr3 31073700 31073774 -128526009 - B1_Mur1 SINE Alu 0 149 76 1 822 309 333 0 29 chr3 31073896 31074069 -128525714 + (TG)n Simple_repeat Simple_repeat 1 168 0 1 822 241 301 0 52 chr3 31074093 31074170 -128525613 - B4 SINE B4 -209 83 11 1 822 458 196 105 8 chr3 31074217 31074350 -128525433 - B3 SINE B2 -6 210 1 1 822 637 291 47 24 chr3 31074536 31074747 -128525036 - Lx8 LINE L1 -326 7147 6932 1 822 264 275 87 0 chr3 31074758 31074827 -128524956 - B4 SINE B4 -216 76 2 1 822 964 221 176 4 chr3 31075003 31075248 -128524535 - RMER13B LTR ERVK 0 860 574 1 822 3284 26 39 0 chr3 31075248 31075629 -128524154 - MTA_Mm LTR MaLR 0 396 1 1 822 9168 38 5 2 chr3 31075629 31076724 -128523059 - MTA_Mm-int LTR MaLR 0 1098 1 1 822 3284 26 39 0 chr3 31076724 31077105 -128522678 - MTA_Mm LTR MaLR 0 396 1 1 822 4945 28 2 2 chr3 31077105 31077706 -128522077 - MTA_Mm-int LTR MaLR 0 1098 498 1 822 3627 12 2 2 chr3 31077696 31078115 -128521668 + MT2_Mm LTR ERVL 75 493 0 1 822 2742 173 69 94 chr3 31078115 31078751 -128521032 - RMER13B LTR ERVK -294 614 1 1 822 1272 293 92 101 chr3 31079450 31079601 -128520182 - MER45B DNA Tip100 -81 959 802 1 822 593 241 37 21 chr3 31079601 31079792 -128519991 - B3A SINE B2 0 198 5 1 822 1272 293 92 101 chr3 31079792 31079991 -128519792 - MER45B DNA Tip100 -239 801 617 1 822 586 184 91 121 chr3 31079991 31080189 -128519594 + B3A SINE B2 2 193 -5 1 822 1272 293 92 101 chr3 31080189 31080661 -128519122 - MER45B DNA Tip100 -424 616 143 1 822 3027 18 3 0 chr3 31080668 31081004 -128518779 + IAPLTR1a_Mm LTR ERVK 1 337 0 1 822 56700 21 17 6 chr3 31081004 31087409 -128512374 + IAPEz-int LTR ERVK 8 6481 0 1 822 3027 18 3 0 chr3 31087409 31087745 -128512038 + IAPLTR1a_Mm LTR ERVK 1 337 0 1 822 227 220 61 106 chr3 31088260 31088326 -128511457 - ID4_ SINE ID -16 67 5 1 822 700 287 51 0 chr3 31088341 31088536 -128511247 - ID_B1 SINE B4 -5 219 15 1 822 1304 99 15 20 chr3 31088603 31088799 -128510984 + B2_Mm2 SINE B2 1 195 0 1 822 937 148 7 7 chr3 31089015 31089165 -128510618 + B1_Mur4 SINE Alu 1 150 0 1 822 378 0 0 0 chr3 31089558 31089600 -128510183 + (TG)n Simple_repeat Simple_repeat 2 43 0 1 822 347 340 47 50 chr3 31089629 31089908 -128509875 - B4A SINE B4 -12 280 3 1 822 23 54 0 0 chr3 31089923 31089960 -128509823 + AT_rich Low_complexity Low_complexity 1 37 0 1 822 362 139 0 14 chr3 31091018 31091091 -128508692 + (CA)n Simple_repeat Simple_repeat 2 73 0 1 822 198 0 0 0 chr3 31091235 31091257 -128508526 + (CA)n Simple_repeat Simple_repeat 2 23 0 1 822 342 0 0 0 chr3 31091336 31091374 -128508409 + (CA)n Simple_repeat Simple_repeat 2 39 0 1 822 1135 287 28 0 chr3 31091995 31092284 -128507499 + Lx9 LINE L1 6608 6904 -740 1 822 273 29 0 0 chr3 31092405 31092439 -128507344 + (TG)n Simple_repeat Simple_repeat 1 34 0 1 822 504 264 87 8 chr3 31092441 31092567 -128507216 - B3A SINE B2 -55 143 8 1 822 211 114 0 43 chr3 31092571 31092617 -128507166 + CT-rich Low_complexity Low_complexity 4 47 0 1 822 293 293 12 12 chr3 31092617 31092700 -128507083 - ID4_ SINE ID 0 83 1 1 822 240 59 0 0 chr3 31092718 31092752 -128507031 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 1 822 592 311 125 36 chr3 31092806 31093149 -128506634 - Charlie7 DNA MER1_type -466 2146 1783 1 822 2820 99 23 0 chr3 31093149 31093534 -128506249 - ORR1B1 LTR MaLR 0 394 1 1 822 592 311 125 36 chr3 31093534 31093630 -128506153 - Charlie7 DNA MER1_type -830 1782 1668 1 822 21 0 0 0 chr3 31093805 31093826 -128505957 + AT_rich Low_complexity Low_complexity 1 21 0 1 822 938 294 48 45 chr3 31093831 31094057 -128505726 + B4A SINE B4 1 233 -59 1 822 2880 142 20 44 chr3 31094057 31094597 -128505186 + RLTR11A2 LTR ERVK 1 527 0 1 822 938 294 48 45 chr3 31094597 31094659 -128505124 + B4A SINE B4 234 290 -2 1 822 209 182 0 0 chr3 31094843 31094876 -128504907 + (CAATG)n Simple_repeat Simple_repeat 1 33 0 1 822 802 120 0 0 chr3 31095630 31095738 -128504045 + B3 SINE B2 8 115 -101 2 822 506 214 62 0 chr3 31095759 31095871 -128503912 - ORR1D2 LTR MaLR 0 370 252 2 822 322 312 20 61 chr3 31096015 31096162 -128503621 + RSINE1 SINE B4 7 147 -18 2 822 276 267 93 0 chr3 31096406 31096481 -128503302 + ORR1D2 LTR MaLR 243 324 -46 2 822 960 300 54 17 chr3 31096617 31096915 -128502868 + MER2 DNA MER2_type 32 340 -5 2 822 186 133 0 0 chr3 31097712 31097742 -128502041 + (TAGG)n Simple_repeat Simple_repeat 3 32 0 2 822 26 0 0 0 chr3 31097772 31097798 -128501985 + AT_rich Low_complexity Low_complexity 1 26 0 2 822 308 164 15 0 chr3 31098666 31098733 -128501050 + (TG)n Simple_repeat Simple_repeat 2 69 0 2 822 300 70 0 0 chr3 31098773 31098816 -128500967 + (TCG)n Simple_repeat Simple_repeat 2 44 0 2 822 1539 0 0 0 chr3 31098816 31098986 -128500797 + (TCC)n Simple_repeat Simple_repeat 2 172 0 2 822 417 268 79 43 chr3 31098986 31099150 -128500633 - B4A SINE B4 -122 170 1 2 822 547 291 119 27 chr3 31099334 31099670 -128500113 - L1MB2 LINE L1 -250 5921 5555 2 822 625 294 80 77 chr3 31100125 31100475 -128499308 - MER63B DNA AcHobo -1 435 85 2 822 229 418 15 0 chr3 31100519 31100653 -128499130 + MamGypLTR2 LTR Gypsy 424 559 -630 2 822 427 385 67 4 chr3 31100651 31100904 -128498879 + LTR81C LTR ERV1? 597 865 -288 2 822 269 254 17 0 chr3 31100905 31100964 -128498819 - RSINE1 SINE B4 -10 155 96 2 822 392 252 37 33 chr3 31101057 31101184 -128498599 - ID_B1 SINE B4 -41 183 60 2 822 661 240 59 20 chr3 31102956 31103160 -128496623 - B3 SINE B2 -4 212 1 2 822 259 264 128 54 chr3 31104210 31104358 -128495425 - RSINE1 SINE B4 -3 162 4 2 822 869 184 7 0 chr3 31104518 31104665 -128495118 - B1_Mus1 SINE Alu 0 148 1 2 822 443 244 28 71 chr3 31104545 31104686 -128495097 - MT2B LTR ERVL -323 278 144 2 822 1580 11 5 0 chr3 31104831 31105016 -128494767 + MTB LTR MaLR 215 400 0 2 822 1592 37 0 21 chr3 31105144 31105335 -128494448 - B2_Mm1t SINE B2 -5 188 2 2 822 220 213 21 0 chr3 31105353 31105400 -128494383 + L4 LINE RTE 1982 2029 0 2 822 564 267 133 0 chr3 31108459 31108654 -128491129 + B4 SINE B4 60 280 -12 2 822 273 29 0 0 chr3 31108712 31108746 -128491037 + (A)n Simple_repeat Simple_repeat 1 34 0 2 822 327 181 313 0 chr3 31108763 31108846 -128490937 + PB1D10 SINE Alu 9 117 0 2 822 257 279 139 0 chr3 31108982 31109061 -128490722 + MER102a DNA MER1_type 194 283 -47 2 822 1194 190 14 0 chr3 31109161 31109377 -128490406 + ORR1C1 LTR MaLR 1 219 -159 2 822 3813 148 11 2 chr3 31109377 31109951 -128489832 + MERVL_2A-int LTR ERVL 3944 4522 -1239 2 822 188 333 57 29 chr3 31110124 31110229 -128489554 + L2b LINE L2 3267 3374 -1 2 822 345 279 135 151 chr3 31110551 31110629 -128489154 + B4A SINE B4 16 73 -219 2 822 995 46 14 53 chr3 31110629 31110822 -128488961 + (TCTCTG)n Simple_repeat Simple_repeat 1 186 -214 2 822 995 46 14 53 chr3 31110827 31111046 -128488737 + (TCTCTG)n Simple_repeat Simple_repeat 187 400 0 2 822 345 279 135 151 chr3 31111046 31111205 -128488578 + B4A SINE B4 74 255 -37 2 822 243 0 0 0 chr3 31113134 31113161 -128486622 + (TG)n Simple_repeat Simple_repeat 1 27 0 2 822 621 137 0 0 chr3 31113161 31113292 -128486491 + (GA)n Simple_repeat Simple_repeat 2 132 0 2 822 744 289 62 69 chr3 31113355 31113537 -128486246 + B4A SINE B4 35 221 -71 2 822 279 0 0 0 chr3 31113537 31113568 -128486215 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 2 822 744 289 62 69 chr3 31113568 31113645 -128486138 + B4A SINE B4 222 292 0 2 822 885 134 0 0 chr3 31113683 31113855 -128485928 + (CA)n Simple_repeat Simple_repeat 1 172 0 2 822 363 253 0 12 chr3 31113999 31114079 -128485704 - ID4_ SINE ID 0 83 5 2 822 475 356 42 19 chr3 31114331 31114543 -128485240 - MARNA DNA Mariner -103 483 267 2 822 1124 291 72 63 chr3 31114543 31114821 -128484962 + L1MA4 LINE L1 5188 5484 -816 2 822 522 192 424 0 chr3 31114821 31114972 -128484811 + B3 SINE B2 2 216 0 2 822 1124 290 70 62 chr3 31114972 31115406 -128484377 + L1MA4 LINE L1 5485 5943 -357 2 822 1642 42 0 0 chr3 31115501 31115690 -128484093 - B2_Mm1t SINE B2 -3 190 2 2 822 23 0 0 0 chr3 31116882 31116905 -128482878 + AT_rich Low_complexity Low_complexity 1 23 0 2 822 621 302 9 28 chr3 31117793 31118011 -128481772 + ID_B1 SINE B4 1 214 -10 2 822 268 312 0 0 chr3 31118902 31118966 -128480817 - MER5A DNA MER1_type 0 189 126 2 822 188 250 40 105 chr3 31119058 31119134 -128480649 - MER5B DNA MER1_type -16 162 92 2 822 369 305 25 25 chr3 31119445 31119566 -128480217 - MER45A DNA Tip100 0 178 58 2 822 208 358 154 0 chr3 31119653 31119776 -128480007 + MIRc SINE MIR 2 143 -125 2 822 305 306 0 0 chr3 31119875 31119937 -128479846 - ID2 SINE ID -4 79 18 2 822 230 319 28 0 chr3 31119880 31119952 -128479831 - B4 SINE B4 -217 75 2 2 822 196 277 233 35 chr3 31119980 31120066 -128479717 + MIRm SINE MIR 53 155 -121 2 822 1073 180 78 0 chr3 31120227 31120433 -128479350 - URR1A DNA MER1_type 0 226 5 2 822 258 392 0 0 chr3 31121036 31121194 -128478589 + C-rich Low_complexity Low_complexity 4 161 0 2 822 188 204 98 39 chr3 31121263 31121314 -128478469 - L2a LINE L2 -6 3420 3367 2 822 664 152 0 0 chr3 31123455 31123561 -128476222 - Lx3C LINE L1 -143 6915 6719 2 822 29 0 0 0 chr3 31123565 31123594 -128476189 + AT_rich Low_complexity Low_complexity 1 29 0 2 822 180 77 0 0 chr3 31123627 31123653 -128476130 + (T)n Simple_repeat Simple_repeat 1 26 0 2 822 227 301 27 0 chr3 31124175 31124248 -128475535 + MER5B DNA MER1_type 78 152 -26 2 822 800 39 0 9 chr3 31124465 31124570 -128475213 + (TTTTC)n Simple_repeat Simple_repeat 4 107 0 2 822 458 196 41 102 chr3 31124570 31124814 -128474969 - RMER17A LTR ERVK -304 447 219 2 822 656 236 217 0 chr3 31125199 31125360 -128474423 + B3 SINE B2 2 197 -19 2 822 230 380 50 0 chr3 31125365 31125486 -128474297 + MIRb SINE MIR 26 152 -116 2 822 187 250 29 154 chr3 31126191 31126295 -128473488 + MIR3 SINE MIR 3 93 -115 2 822 531 45 0 0 chr3 31126335 31126401 -128473382 + (TCTA)n Simple_repeat Simple_repeat 3 68 0 2 822 243 61 0 0 chr3 31126414 31126447 -128473336 + (TG)n Simple_repeat Simple_repeat 2 34 0 2 822 316 319 42 14 chr3 31126450 31126593 -128473190 - RSINE1 SINE B4 -14 151 5 2 822 345 197 0 0 chr3 31127752 31127823 -128471960 + (TA)n Simple_repeat Simple_repeat 1 71 0 2 822 552 232 105 173 chr3 31128777 31128845 -128470938 - B4 SINE B4 -5 287 223 2 822 596 14 0 14 chr3 31128845 31128919 -128470864 + (TCC)n Simple_repeat Simple_repeat 1 73 0 2 822 552 232 105 173 chr3 31128919 31129116 -128470667 - B4 SINE B4 -70 222 40 2 822 307 188 72 0 chr3 31129632 31129701 -128470082 - ID4_ SINE ID -1 82 9 2 822 321 223 277 0 chr3 31130627 31130757 -128469026 + Charlie4a DNA MER1_type 60 225 -283 2 822 4364 88 7 0 chr3 31130771 31131360 -128468423 + Lx2 LINE L1 6056 6648 -349 2 822 1027 110 168 0 chr3 31131355 31131434 -128468349 + Lx2 LINE L1 6775 6854 -143 2 822 231 88 0 0 chr3 31131434 31131468 -128468315 + (TGGG)n Simple_repeat Simple_repeat 1 34 0 2 822 1027 110 168 0 chr3 31131468 31131561 -128468222 + Lx2 LINE L1 6855 6975 -22 2 822 304 267 118 56 chr3 31131561 31131823 -128467960 + Charlie4a DNA MER1_type 287 507 -1 2 822 1092 91 0 0 chr3 31132117 31132271 -128467512 + (TTCTCC)n Simple_repeat Simple_repeat 4 157 0 2 822 423 0 0 0 chr3 31132271 31132317 -128467466 + (CA)n Simple_repeat Simple_repeat 1 47 0 2 822 213 311 238 11 chr3 31133723 31133908 -128465875 + MIRb SINE MIR 28 254 -8 2 822 901 207 19 48 chr3 31134305 31134513 -128465270 + B3 SINE B2 2 203 -13 2 822 275 263 30 40 chr3 31135340 31135439 -128464344 + MIR3 SINE MIR 107 204 -4 2 822 294 303 145 41 chr3 31135897 31136069 -128463714 + MIRb SINE MIR 31 220 -48 2 822 198 0 0 0 chr3 31136085 31136107 -128463676 + (GA)n Simple_repeat Simple_repeat 1 22 0 2 822 282 29 0 0 chr3 31137296 31137331 -128462452 + (TC)n Simple_repeat Simple_repeat 2 36 0 2 822 297 0 0 0 chr3 31137331 31137363 -128462420 + (TG)n Simple_repeat Simple_repeat 2 34 0 2 822 338 225 14 15 chr3 31137363 31137436 -128462347 - B4A SINE B4 -93 72 1 2 822 892 258 225 12 chr3 31138580 31138913 -128460870 - MTD LTR MaLR -11 408 5 2 822 519 277 0 0 chr3 31138917 31139036 -128460747 - B1F1 SINE Alu -30 119 1 2 822 1367 211 131 15 chr3 31139392 31139728 -128460055 + Lx8 LINE L1 6968 7342 -131 2 822 678 301 25 104 chr3 31139723 31140049 -128459734 + Lx8 LINE L1 7029 7328 -145 2 822 236 332 74 102 chr3 31140067 31140282 -128459501 - ORR1E LTR MaLR -150 209 1 2 822 189 264 222 0 chr3 31140311 31140383 -128459400 - MIR SINE MIR -69 139 52 2 822 1558 225 119 13 chr3 31140588 31140967 -128458816 - MTD LTR MaLR 0 419 1 2 822 823 286 100 0 chr3 31140967 31141208 -128458575 + RCHARR1 DNA MER1_type 38 302 -672 2 822 2251 166 22 17 chr3 31141217 31141622 -128458161 + MTD LTR MaLR 1 407 -12 2 822 1089 245 85 3 chr3 31141629 31141960 -128457823 + RCHARR1 DNA MER1_type 309 666 -308 2 822 864 122 0 61 chr3 31141974 31142122 -128457661 + B1_Mus2 SINE Alu 9 147 0 2 822 343 214 178 41 chr3 31142179 31142325 -128457458 + RCHARR1 DNA MER1_type 429 594 -380 2 822 384 0 54 0 chr3 31142326 31142382 -128457401 + (TG)n Simple_repeat Simple_repeat 2 60 0 2 822 531 194 10 0 chr3 31142399 31142497 -128457286 - RSINE1 SINE B4 -64 101 3 2 822 207 205 0 0 chr3 31144388 31144427 -128455356 + CT-rich Low_complexity Low_complexity 4 42 0 2 822 667 173 36 0 chr3 31144427 31144537 -128455246 - B1_Mur2 SINE Alu -5 144 31 2 822 732 223 30 74 chr3 31144872 31145075 -128454708 - B3A SINE B2 0 198 5 2 822 762 237 76 102 chr3 31145652 31146140 -128453643 + RMER4B LTR ERVK 1 455 -11 3 822 368 298 234 90 chr3 31146127 31146260 -128453523 + B4 SINE B4 70 214 -78 3 822 297 0 0 0 chr3 31146260 31146293 -128453490 + (CA)n Simple_repeat Simple_repeat 2 34 0 3 822 368 298 234 90 chr3 31146293 31146347 -128453436 + B4 SINE B4 215 284 -8 3 822 750 226 110 59 chr3 31146560 31146832 -128452951 + RLTR14 LTR ERV1 48 333 -49 3 822 297 0 0 0 chr3 31146866 31146899 -128452884 + (CA)n Simple_repeat Simple_repeat 2 34 0 3 822 206 324 28 56 chr3 31147978 31148086 -128451697 - MIRb SINE MIR -51 217 113 3 822 278 274 182 16 chr3 31148172 31148298 -128451485 + Charlie17a DNA MER1_type 72 218 -1 3 822 274 366 38 0 chr3 31148506 31148637 -128451146 - MIR3 SINE MIR -48 160 25 3 822 228 256 2 0 chr3 31149184 31149248 -128450535 + MIRc SINE MIR 101 168 -108 3 822 413 279 115 8 chr3 31149280 31149410 -128450373 - RSINE1 SINE B4 -16 149 6 3 822 207 0 0 0 chr3 31149438 31149461 -128450322 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 3 822 716 292 84 0 chr3 31150200 31150378 -128449405 + RMER30 DNA MER1_type 5 197 -5 3 822 186 71 0 0 chr3 31150439 31150467 -128449316 + (TCTG)n Simple_repeat Simple_repeat 2 29 0 3 822 667 229 21 21 chr3 31150477 31150620 -128449163 - RSINE1 SINE B4 -19 146 4 3 822 309 271 0 133 chr3 31152150 31152205 -128447578 + L1MC LINE L1 5193 5236 -910 3 822 664 217 14 27 chr3 31152205 31152352 -128447431 + B1_Mur2 SINE Alu 1 145 -4 3 822 309 271 0 133 chr3 31152352 31152394 -128447389 + L1MC LINE L1 5237 5277 -869 3 822 543 283 93 51 chr3 31152558 31152774 -128447009 - MIRb SINE MIR -1 267 43 3 822 254 333 26 46 chr3 31152779 31152930 -128446853 + L2 LINE L2 944 1091 -2328 3 822 810 270 88 104 chr3 31154002 31154376 -128445407 + MTE2a LTR MaLR 40 419 0 3 822 21 0 0 0 chr3 31154760 31154781 -128445002 + AT_rich Low_complexity Low_complexity 1 21 0 3 822 416 152 20 20 chr3 31154856 31154957 -128444826 + CT-rich Low_complexity Low_complexity 4 104 0 3 822 1006 254 22 92 chr3 31155391 31155852 -128443931 + RLTR31_Mur LTR ERVK 8 441 -120 3 822 198 0 0 0 chr3 31156030 31156052 -128443731 + (TTTTTG)n Simple_repeat Simple_repeat 2 23 0 3 822 326 306 74 0 chr3 31156230 31156338 -128443445 + RSINE1 SINE B4 3 118 -47 3 822 256 89 35 18 chr3 31156344 31156401 -128443382 + (TAAA)n Simple_repeat Simple_repeat 3 60 0 3 822 1233 242 36 82 chr3 31157218 31157547 -128442236 - ORR1E LTR MaLR -41 318 5 3 822 446 228 33 0 chr3 31158089 31158181 -128441602 + MTD LTR MaLR 1 95 -324 3 822 1431 75 11 5 chr3 31158181 31158369 -128441414 + B2_Mm2 SINE B2 3 191 -4 3 822 439 229 20 239 chr3 31158369 31158477 -128441306 + MTD LTR MaLR 83 157 -264 3 822 241 294 57 38 chr3 31158629 31158735 -128441048 - PB1D10 SINE Alu -8 109 2 3 822 356 309 66 136 chr3 31159019 31159446 -128440337 + RMER10A LTR ERVL 18 414 -28 3 822 1236 159 23 32 chr3 31160129 31160350 -128439433 - URR1B DNA MER1_type -6 219 1 3 822 392 274 86 0 chr3 31162018 31162135 -128437648 + RSINE1 SINE B4 38 164 -1 3 822 255 170 0 0 chr3 31163067 31163114 -128436669 + CT-rich Low_complexity Low_complexity 4 50 0 3 822 683 209 18 76 chr3 31163117 31163288 -128436495 - B2_Mm2 SINE B2 -34 161 1 3 822 774 153 21 42 chr3 31163414 31163557 -128436226 - B1_Mur1 SINE Alu 0 149 10 3 822 192 40 0 0 chr3 31163596 31163621 -128436162 + (TG)n Simple_repeat Simple_repeat 2 26 0 3 822 285 357 86 16 chr3 31164437 31164565 -128435218 - ID_B1 SINE B4 -8 216 80 3 822 245 342 129 50 chr3 31165529 31165769 -128434014 + LTR33 LTR ERVL 87 345 -170 3 822 192 125 0 0 chr3 31165776 31165808 -128433975 + (TCCCC)n Simple_repeat Simple_repeat 3 34 0 3 822 576 65 0 0 chr3 31165817 31165894 -128433889 + (TCCC)n Simple_repeat Simple_repeat 1 77 0 3 822 204 185 36 18 chr3 31166389 31166444 -128433339 + CT-rich Low_complexity Low_complexity 4 59 0 3 822 214 348 11 0 chr3 31166520 31166609 -128433174 - B1F SINE Alu -59 90 1 3 822 409 230 135 26 chr3 31166609 31166763 -128433020 - MLT1D LTR MaLR -312 193 23 3 822 556 240 47 114 chr3 31167671 31167864 -128431919 - B4 SINE B4 -63 229 50 3 822 285 292 179 0 chr3 31168130 31168298 -128431485 - Helitron3Na_Mam RC Helitron 0 486 289 3 822 290 361 8 0 chr3 31168951 31169070 -128430713 + L2 LINE L2 2833 2952 -467 3 822 1085 146 16 21 chr3 31169131 31169320 -128430463 - B2_Mm2 SINE B2 -7 188 1 3 822 261 0 0 0 chr3 31169395 31169424 -128430359 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 3 822 249 182 0 0 chr3 31169492 31169547 -128430236 + (TATG)n Simple_repeat Simple_repeat 2 56 0 3 822 453 170 35 7 chr3 31169586 31169728 -128430055 + (TCTA)n Simple_repeat Simple_repeat 3 148 0 3 822 183 302 16 0 chr3 31170104 31170167 -128429616 - MIR3 SINE MIR -20 188 125 3 822 23 54 0 0 chr3 31170322 31170359 -128429424 + AT_rich Low_complexity Low_complexity 1 37 0 3 822 302 336 129 36 chr3 31170643 31170782 -128429001 + B4 SINE B4 125 276 -16 3 822 1928 163 37 8 chr3 31170813 31171165 -128428618 + ORR1B2 LTR MaLR 1 362 -5 3 822 299 320 62 0 chr3 31171579 31171676 -128428107 + Tigger5 DNA MER2_type 2304 2406 0 3 822 3247 36 36 5 chr3 31172409 31172797 -128426986 - MTB LTR MaLR 0 400 1 3 822 270 160 0 0 chr3 31173607 31173657 -128426126 + (CA)n Simple_repeat Simple_repeat 2 51 0 3 822 189 406 8 0 chr3 31173692 31173825 -128425958 - MIR SINE MIR -85 177 44 3 822 446 261 38 8 chr3 31173853 31173984 -128425799 + MER3 DNA MER1_type 21 155 -54 3 822 326 237 111 118 chr3 31173996 31174149 -128425634 - Tigger1 DNA MER2_type -14 2404 2253 3 822 359 238 378 57 chr3 31174230 31174436 -128425347 + B4 SINE B4 1 272 -20 3 822 678 236 3 0 chr3 31174468 31174825 -128424958 + (CA)n Simple_repeat Simple_repeat 1 357 0 3 822 410 202 28 28 chr3 31174830 31174937 -128424846 + (CATA)n Simple_repeat Simple_repeat 4 110 0 3 822 1127 285 27 45 chr3 31176189 31176637 -128423146 + Lx9 LINE L1 7052 7491 -153 3 822 248 312 13 0 chr3 31176847 31176924 -128422859 + ID4_ SINE ID 3 80 -3 3 822 227 318 23 12 chr3 31177203 31177289 -128422494 - MER5A1 DNA MER1_type -30 136 50 3 822 632 303 35 115 chr3 31177657 31178001 -128421782 - MT2A LTR ERVL -166 367 55 3 822 1155 68 0 7 chr3 31178001 31178149 -128421634 - B1_Mus2 SINE Alu 0 147 1 3 822 632 303 35 115 chr3 31178149 31178203 -128421580 - MT2A LTR ERVL -479 54 1 3 822 180 0 0 0 chr3 31179147 31179167 -128420616 + (TTA)n Simple_repeat Simple_repeat 2 21 0 3 822 423 0 0 0 chr3 31179241 31179288 -128420495 + (TC)n Simple_repeat Simple_repeat 1 47 0 3 822 902 261 70 36 chr3 31179447 31179917 -128419866 - L1MB7 LINE L1 -44 6140 5652 3 822 378 232 77 90 chr3 31179935 31180091 -128419692 - B3A SINE B2 -10 185 32 3 822 1319 237 86 17 chr3 31180117 31180760 -128419023 - L1MB7 LINE L1 -511 5667 4973 3 822 353 267 70 27 chr3 31180816 31181001 -128418782 + HAL1-2a_MD LINE L1 2310 2502 -522 3 822 252 0 0 0 chr3 31181273 31181301 -128418482 + (CAAT)n Simple_repeat Simple_repeat 1 28 0 3 822 312 92 30 30 chr3 31181301 31181368 -128418415 + (TCTA)n Simple_repeat Simple_repeat 4 70 0 3 822 1240 217 163 101 chr3 31181376 31181811 -128417972 - MT2A LTR ERVL -71 462 1 3 822 319 304 0 0 chr3 31182834 31182926 -128416857 + (TG)n Simple_repeat Simple_repeat 1 92 0 3 822 246 297 9 73 chr3 31183203 31183214 -128416569 - B1F1 SINE Alu -39 110 100 3 822 182 37 37 0 chr3 31183214 31183241 -128416542 + (TA)n Simple_repeat Simple_repeat 2 29 0 3 822 246 297 9 73 chr3 31183241 31183338 -128416445 - B1F1 SINE Alu -50 99 9 3 822 506 275 115 56 chr3 31183379 31183649 -128416134 - B4A SINE B4 -2 290 5 3 822 23 68 0 0 chr3 31183857 31183901 -128415882 + AT_rich Low_complexity Low_complexity 1 44 0 3 822 391 299 20 40 chr3 31183929 31184079 -128415704 - RSINE1 SINE B4 -15 150 4 3 822 489 163 0 0 chr3 31184271 31184363 -128415420 + GA-rich Low_complexity Low_complexity 2 93 0 3 822 208 91 45 0 chr3 31184679 31184723 -128415060 + (TTTTG)n Simple_repeat Simple_repeat 3 48 0 3 822 634 286 12 0 chr3 31185144 31185305 -128414478 - RSINE1 SINE B4 0 165 3 3 822 594 243 14 14 chr3 31185309 31185455 -128414328 - B1F1 SINE Alu -3 146 1 3 822 324 317 54 50 chr3 31185774 31186016 -128413767 + MIR SINE MIR 12 254 -8 3 822 251 276 154 46 chr3 31186094 31186269 -128413514 + ERVL-B4-int LTR ERVL 4947 5140 -574 3 822 323 223 96 10 chr3 31186396 31186500 -128413283 + B1F SINE Alu 25 137 -12 3 822 423 0 0 0 chr3 31186500 31186547 -128413236 + (CAG)n Simple_repeat Simple_repeat 1 47 0 3 822 647 302 117 5 chr3 31187154 31187212 -128412571 + B4A SINE B4 41 102 -190 3 822 477 0 0 0 chr3 31187212 31187265 -128412518 + (TG)n Simple_repeat Simple_repeat 1 53 0 3 822 647 302 117 5 chr3 31187265 31187429 -128412354 + B4A SINE B4 103 287 -5 3 822 606 28 0 0 chr3 31187641 31187713 -128412070 + (TTTC)n Simple_repeat Simple_repeat 1 72 0 3 822 237 256 38 13 chr3 31188595 31188674 -128411109 + ID4 SINE ID 3 83 0 3 822 681 260 41 0 chr3 31188845 31188991 -128410792 - RSINE1 SINE B4 -12 153 2 3 822 861 129 0 0 chr3 31189126 31189265 -128410518 + (TCTCC)n Simple_repeat Simple_repeat 2 140 0 3 822 2177 201 11 0 chr3 31189265 31189628 -128410155 - Lx5 LINE L1 -113 6937 6571 3 822 905 184 375 10 chr3 31189649 31189945 -128409838 + Lx5 LINE L1 6149 6552 -498 3 822 461 327 36 77 chr3 31189946 31190334 -128409449 - L1MA4 LINE L1 -239 6061 5690 3 822 498 294 30 70 chr3 31191592 31191861 -128407922 + MTE2a LTR MaLR 6 242 -137 3 822 766 235 22 16 chr3 31193257 31193439 -128406344 + B3A SINE B2 2 184 -14 4 822 666 171 0 0 chr3 31193470 31193646 -128406137 + (CA)n Simple_repeat Simple_repeat 1 176 0 4 822 453 200 0 21 chr3 31193657 31194187 -128405596 + (CA)n Simple_repeat Simple_repeat 1 518 0 4 102 1059 282 57 8 chr3 31194790 31195144 -128404639 + MTE2a LTR MaLR 3 373 -6 4 823 352 300 11 0 chr3 31196207 31196297 -128403486 - PB1D10 SINE Alu -6 111 21 4 823 1527 125 35 0 chr3 31197281 31197537 -128402246 - RMER1A Other Other 0 1030 766 4 823 1505 75 0 18 chr3 31197666 31197883 -128401900 + L1Md_F2 LINE L1 6370 6582 0 4 823 192 380 64 18 chr3 31198404 31198514 -128401269 + MIR3 SINE MIR 51 165 -43 4 823 206 292 50 50 chr3 31199174 31199275 -128400508 + MIR3 SINE MIR 87 187 -21 4 823 459 0 0 0 chr3 31199944 31199995 -128399788 + (GA)n Simple_repeat Simple_repeat 2 52 0 4 823 423 297 51 0 chr3 31200012 31200130 -128399653 - RSINE1 SINE B4 -3 162 39 4 823 1838 151 47 152 chr3 31200436 31200685 -128399098 + ORR1C2 LTR MaLR 1 194 -190 4 823 966 117 0 0 chr3 31200685 31200864 -128398919 + (TC)n Simple_repeat Simple_repeat 2 180 0 4 823 1838 151 47 152 chr3 31200864 31201043 -128398740 + ORR1C2 LTR MaLR 195 384 0 4 823 831 131 0 0 chr3 31201341 31201501 -128398282 + (TG)n Simple_repeat Simple_repeat 1 160 0 4 823 708 263 111 27 chr3 31201509 31201771 -128398012 - B4A SINE B4 -4 288 5 4 823 275 299 244 18 chr3 31203000 31203225 -128396558 - B4A SINE B4 -16 276 1 4 823 899 216 60 5 chr3 31203254 31203454 -128396329 - B3 SINE B2 -5 211 1 4 823 495 118 0 0 chr3 31205342 31205418 -128394365 + (CAAAC)n Simple_repeat Simple_repeat 2 77 0 4 823 216 0 0 0 chr3 31205634 31205658 -128394125 + (T)n Simple_repeat Simple_repeat 1 24 0 4 823 378 265 127 15 chr3 31205692 31205826 -128393957 + MER3 DNA MER1_type 56 204 -5 4 823 217 216 0 0 chr3 31209345 31209396 -128390387 + C-rich Low_complexity Low_complexity 1 51 0 4 823 1319 91 21 5 chr3 31210876 31211063 -128388720 + B2_Mm1a SINE B2 2 191 -2 4 823 3254 46 5 5 chr3 31211374 31211770 -128388013 + MTA_Mm LTR MaLR 1 396 0 4 823 262 303 294 55 chr3 31212878 31213113 -128386670 + B4A SINE B4 2 292 0 4 823 560 279 81 43 chr3 31213506 31213764 -128386019 - MER113 DNA MER1_type -150 371 104 4 823 800 244 16 11 chr3 31213877 31214059 -128385724 - B4 SINE B4 -77 215 33 4 823 183 100 0 0 chr3 31214144 31214174 -128385609 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 4 823 585 73 12 0 chr3 31214941 31215023 -128384760 - BC1_Mm scRNA scRNA -67 85 3 4 823 327 25 0 0 chr3 31215586 31215626 -128384157 + (TG)n Simple_repeat Simple_repeat 1 40 0 4 823 430 376 65 12 chr3 31215648 31215893 -128383890 + RMER15 LTR ERVL 291 548 -27 4 823 1885 158 47 73 chr3 31216340 31216781 -128383002 - ORR1B1 LTR MaLR 0 394 9 4 823 966 226 141 36 chr3 31216779 31216916 -128382867 - ORR1D1 LTR MaLR -69 305 162 4 823 213 39 0 0 chr3 31216916 31216942 -128382841 + (TG)n Simple_repeat Simple_repeat 1 26 0 4 823 966 226 141 36 chr3 31216942 31217080 -128382703 - ORR1D1 LTR MaLR -213 161 1 4 823 183 357 20 10 chr3 31217232 31217331 -128382452 + MIR3 SINE MIR 81 180 -28 4 823 329 187 13 0 chr3 31220018 31220093 -128379690 + (CA)n Simple_repeat Simple_repeat 2 77 0 4 823 474 228 44 89 chr3 31220682 31220817 -128378966 + ID_B1 SINE B4 86 214 -10 4 823 279 0 0 0 chr3 31220817 31220848 -128378935 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 4 823 642 297 46 0 chr3 31220876 31221051 -128378732 + B3A SINE B2 14 196 -2 4 823 234 0 0 0 chr3 31221097 31221123 -128378660 + (CA)n Simple_repeat Simple_repeat 1 26 0 4 823 450 0 0 0 chr3 31221123 31221172 -128378611 + (GA)n Simple_repeat Simple_repeat 2 51 0 4 823 421 317 94 72 chr3 31221772 31222037 -128377746 + B4 SINE B4 2 272 -20 4 823 524 262 13 51 chr3 31222668 31222825 -128376958 - RSINE1 SINE B4 -14 151 1 4 823 239 287 34 11 chr3 31223364 31223452 -128376331 + MIRb SINE MIR 87 176 -92 4 823 266 268 20 10 chr3 31223646 31223744 -128376039 + (TG)n Simple_repeat Simple_repeat 2 100 0 4 823 727 274 112 30 chr3 31223748 31223935 -128375848 - B4 SINE B4 -1 291 90 4 823 507 45 0 0 chr3 31223935 31224001 -128375782 + (TG)n Simple_repeat Simple_repeat 1 66 0 4 823 727 274 112 30 chr3 31224001 31224080 -128375703 - B4 SINE B4 -203 89 3 4 823 1063 91 67 22 chr3 31224264 31224443 -128375340 + ORR1A2 LTR MaLR 1 187 -140 4 823 1772 72 8 4 chr3 31224399 31224650 -128375133 + MT2B2 LTR ERVL 328 579 -5 4 823 308 83 0 20 chr3 31225023 31225072 -128374711 + (TCC)n Simple_repeat Simple_repeat 2 49 0 4 823 1271 240 150 11 chr3 31225114 31225480 -128374303 + MTD LTR MaLR 1 417 -2 4 823 441 0 0 0 chr3 31225482 31225531 -128374252 + (TG)n Simple_repeat Simple_repeat 1 49 0 4 823 405 0 0 0 chr3 31225531 31225575 -128374208 + (GA)n Simple_repeat Simple_repeat 1 45 0 4 823 285 274 133 25 chr3 31225578 31225698 -128374085 - RSINE1 SINE B4 -31 134 2 4 823 298 338 27 20 chr3 31226474 31226622 -128373161 + MLT1J LTR MaLR 307 455 -57 4 823 198 0 0 0 chr3 31227058 31227080 -128372703 + (TG)n Simple_repeat Simple_repeat 1 22 0 4 823 297 0 0 0 chr3 31228020 31228053 -128371730 + (TAGA)n Simple_repeat Simple_repeat 4 36 0 4 823 246 32 0 0 chr3 31228053 31228083 -128371700 + (CCAA)n Simple_repeat Simple_repeat 3 33 0 4 823 953 294 28 85 chr3 31228647 31228746 -128371037 + MTEb LTR MaLR 1 96 -283 4 823 1087 44 66 0 chr3 31228746 31228883 -128370900 + B1_Mus1 SINE Alu 2 147 -1 4 823 953 294 28 85 chr3 31228883 31229181 -128370602 + MTEb LTR MaLR 97 375 -4 4 823 1265 247 5 118 chr3 31229190 31229425 -128370358 + ORR1E LTR MaLR 5 197 -162 4 823 654 13 0 0 chr3 31229425 31229500 -128370283 + (TCTA)n Simple_repeat Simple_repeat 4 78 0 4 823 1265 247 5 118 chr3 31229500 31229654 -128370129 + ORR1E LTR MaLR 198 350 -9 4 823 1008 319 98 21 chr3 31230073 31230492 -128369291 - Lx8 LINE L1 -164 7309 6859 4 823 357 322 64 0 chr3 31230497 31230668 -128369115 - L1M5 LINE L1 -687 5437 5256 4 823 41 36 0 0 chr3 31230819 31230874 -128368909 + AT_rich Low_complexity Low_complexity 1 55 0 4 823 363 44 0 0 chr3 31231218 31231263 -128368520 + (TG)n Simple_repeat Simple_repeat 1 45 0 4 823 2756 134 29 41 chr3 31231279 31232123 -128367660 - L1_Mus1 LINE L1 -16 6638 5860 4 823 572 221 7 22 chr3 31232138 31232277 -128367506 - RSINE1 SINE B4 -28 137 1 4 823 3864 38 0 0 chr3 31232592 31233043 -128366740 - L1Md_T LINE L1 0 6582 6132 4 823 401 381 13 49 chr3 31233231 31233457 -128366326 + LTR16C LTR ERVL 74 291 -198 4 823 199 362 198 0 chr3 31233572 31233779 -128366004 + L2 LINE L2 2333 2580 -839 4 823 576 332 32 39 chr3 31233833 31234112 -128365671 + B4A SINE B4 2 278 -14 4 823 234 0 0 0 chr3 31234146 31234172 -128365611 + (CA)n Simple_repeat Simple_repeat 2 27 0 4 823 357 313 40 0 chr3 31234187 31234286 -128365497 + PB1 SINE Alu 5 107 -20 4 823 261 57 0 0 chr3 31234309 31234344 -128365439 + (CAA)n Simple_repeat Simple_repeat 3 37 0 4 823 188 214 235 26 chr3 31234493 31234608 -128365175 + L2 LINE L2 2814 2952 -467 4 823 300 111 0 0 chr3 31236943 31236988 -128362795 + (CAAAA)n Simple_repeat Simple_repeat 1 45 0 4 823 21 0 0 0 chr3 31237255 31237276 -128362507 + AT_rich Low_complexity Low_complexity 1 21 0 4 823 374 57 19 0 chr3 31237293 31237346 -128362437 + (TG)n Simple_repeat Simple_repeat 2 55 0 4 823 359 278 29 22 chr3 31239190 31239326 -128360457 + RMER15 LTR ERVL 426 562 -13 4 823 3506 20 5 0 chr3 31239733 31240127 -128359656 + MTA_Mm LTR MaLR 1 396 0 4 823 9775 16 1 0 chr3 31240127 31241224 -128358559 + MTA_Mm-int LTR MaLR 1 1098 0 4 823 3506 20 5 0 chr3 31241224 31241618 -128358165 + MTA_Mm LTR MaLR 1 396 0 4 823 803 276 123 21 chr3 31242601 31242927 -128356856 - ORR1E LTR MaLR 0 359 1 4 823 635 191 90 8 chr3 31242988 31243159 -128356624 - B3 SINE B2 -20 175 5 4 823 180 0 0 0 chr3 31243175 31243195 -128356588 + (A)n Simple_repeat Simple_repeat 1 20 0 4 823 802 308 60 49 chr3 31243336 31243722 -128356061 + MLT1B LTR MaLR 1 390 0 4 823 429 294 45 45 chr3 31244320 31244464 -128355319 + Lx8 LINE L1 7289 7437 -36 4 823 324 0 0 0 chr3 31244464 31244500 -128355283 + (CA)n Simple_repeat Simple_repeat 1 36 0 4 823 429 294 45 45 chr3 31244500 31244533 -128355250 + Lx8 LINE L1 7438 7466 -7 4 823 298 295 37 37 chr3 31245633 31245767 -128354016 - L2c LINE L2 -1 3386 3253 4 823 242 370 73 10 chr3 31246110 31246315 -128353468 - L2c LINE L2 -536 2883 2666 4 823 709 120 0 0 chr3 31246648 31246756 -128353027 - B1_Mus1 SINE Alu -40 108 1 4 823 3554 82 6 16 chr3 31247059 31247558 -128352225 + L1Md_F2 LINE L1 6089 6582 0 4 823 183 42 0 0 chr3 31247566 31247590 -128352193 + (TAAAA)n Simple_repeat Simple_repeat 1 24 0 4 823 222 37 0 0 chr3 31248105 31248132 -128351651 + (TG)n Simple_repeat Simple_repeat 1 27 0 4 823 450 288 76 8 chr3 31248149 31248268 -128351515 - RSINE1 SINE B4 -36 129 3 4 823 719 313 42 28 chr3 31249087 31249304 -128350479 - ID_B1 SINE B4 0 224 5 4 823 5358 151 36 43 chr3 31249564 31250611 -128349172 + L1Md_F LINE L1 166 1205 -5411 4 823 37207 32 0 1 chr3 31250617 31255034 -128344749 + L1Md_F LINE L1 1170 5586 -297 4 823 7983 62 1 0 chr3 31255034 31256029 -128343754 + L1Md_T LINE L1 5587 6582 0 4 823 424 145 0 0 chr3 31256031 31256107 -128343676 + L1_Mm LINE L1 4601 4676 -1207 4 823 2969 159 81 20 chr3 31256614 31257198 -128342585 + Lx4B LINE L1 6436 7054 -4 4 823 33577 68 15 5 chr3 31257654 31262576 -128337207 + L1Md_F2 LINE L1 618 5586 -297 4 823 8001 61 1 2 chr3 31262576 31263573 -128336210 + L1Md_F2 LINE L1 5587 6582 0 4 823 210 37 0 0 chr3 31263693 31263720 -128336063 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 4 823 261 313 12 0 chr3 31263891 31263974 -128335809 + (TATATG)n Simple_repeat Simple_repeat 3 86 0 4 823 535 226 10 19 chr3 31263975 31264389 -128335394 + (TATG)n Simple_repeat Simple_repeat 1 409 0 4 823 229 167 29 29 chr3 31264405 31264473 -128335310 + (TATG)n Simple_repeat Simple_repeat 3 70 0 4 823 234 0 0 0 chr3 31265062 31265088 -128334695 + (TTTTTG)n Simple_repeat Simple_repeat 5 30 0 4 823 1190 54 0 0 chr3 31265088 31265235 -128334548 - B1_Mm SINE Alu 0 147 1 5 823 468 0 0 0 chr3 31265610 31265662 -128334121 + (TG)n Simple_repeat Simple_repeat 1 52 0 5 823 226 343 9 56 chr3 31268263 31268371 -128331412 - MER20 DNA MER1_type -6 213 111 5 823 501 17 0 0 chr3 31268987 31269045 -128330738 + (CA)n Simple_repeat Simple_repeat 2 59 0 5 823 1724 188 93 14 chr3 31269960 31270316 -128329467 + ORR1C2 LTR MaLR 1 384 0 5 823 235 273 78 0 chr3 31271495 31271572 -128328211 - B4A SINE B4 -93 199 117 5 823 939 258 5 0 chr3 31272555 31272741 -128327042 + ID_B1 SINE B4 25 211 -13 5 823 245 267 26 13 chr3 31273416 31273480 -128326303 - MTE2a LTR MaLR -226 153 88 5 823 6524 34 7 4 chr3 31273480 31274254 -128325529 + L1Md_F3 LINE L1 5809 6584 0 5 823 245 267 26 13 chr3 31274254 31274265 -128325518 - MTE2a LTR MaLR -292 87 77 5 823 378 186 0 41 chr3 31274266 31274339 -128325444 - RMER10A LTR ERVL -372 70 1 5 823 345 323 45 4 chr3 31274806 31274963 -128324820 - MIR SINE MIR -26 242 79 5 823 182 216 15 39 chr3 31276118 31276248 -128323535 + (CA)n Simple_repeat Simple_repeat 1 127 0 5 823 302 141 16 71 chr3 31276294 31276477 -128323306 + (CA)n Simple_repeat Simple_repeat 1 173 0 5 823 285 139 43 61 chr3 31276491 31276606 -128323177 + (CA)n Simple_repeat Simple_repeat 1 113 0 5 823 325 156 46 35 chr3 31276621 31276794 -128322989 + (CA)n Simple_repeat Simple_repeat 2 176 0 5 823 263 342 149 13 chr3 31277576 31277804 -128321979 - MIR SINE MIR -3 259 1 5 823 299 182 13 0 chr3 31278016 31278093 -128321690 + C-rich Low_complexity Low_complexity 4 81 0 5 823 329 302 55 8 chr3 31278195 31278326 -128321457 - MLT1C LTR MaLR 0 467 225 5 823 298 320 51 39 chr3 31278438 31278594 -128321189 - MLT1C LTR MaLR -286 181 24 5 823 783 218 124 31 chr3 31278924 31279194 -128320589 - MTD LTR MaLR -14 405 104 5 823 26 0 0 0 chr3 31279347 31279373 -128320410 + AT_rich Low_complexity Low_complexity 1 26 0 5 823 235 72 0 45 chr3 31279373 31279417 -128320366 + (TG)n Simple_repeat Simple_repeat 1 42 0 5 823 305 240 146 54 chr3 31279421 31279578 -128320205 - B2_Mm1t SINE B2 -30 186 1 5 823 269 167 0 32 chr3 31279764 31279826 -128319957 + B1_Mus1 SINE Alu 1 60 -88 5 823 418 141 0 32 chr3 31279829 31279954 -128319829 + GA-rich Low_complexity Low_complexity 4 124 0 5 823 420 165 0 0 chr3 31279976 31280091 -128319692 + GA-rich Low_complexity Low_complexity 32 146 0 5 823 540 111 87 39 chr3 31280093 31280196 -128319587 + B1_Mur3 SINE Alu 42 149 0 5 823 246 32 0 0 chr3 31280846 31280877 -128318906 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 5 823 2193 188 197 23 chr3 31280904 31281421 -128318362 - RMER19C LTR ERVK 0 611 5 5 823 291 28 0 0 chr3 31281421 31281457 -128318326 + (TG)n Simple_repeat Simple_repeat 2 37 0 5 823 1080 133 0 0 chr3 31281590 31281755 -128318028 + Lx5 LINE L1 4461 4625 -1252 5 823 9690 127 26 6 chr3 31281757 31282931 -128316852 + L1_Mus3 LINE L1 4344 5533 -350 5 823 2365 67 45 0 chr3 31282931 31283244 -128316539 + IAPLTR2b LTR ERVK 1 327 0 5 823 9690 82 28 1 chr3 31283244 31284327 -128315456 + L1_Mus3 LINE L1 5534 6638 0 5 823 894 197 46 5 chr3 31284341 31284535 -128315248 + Lx5 LINE L1 4628 4829 -1051 5 823 3361 189 25 3 chr3 31284513 31285146 -128314637 + Lx5 LINE L1 5069 5715 -162 5 823 1308 194 43 7 chr3 31285146 31285422 -128314361 - ORR1B1 LTR MaLR -13 381 79 5 823 392 184 9 37 chr3 31285423 31285530 -128314253 - Lx6 LINE L1 -1384 6076 5973 5 823 562 191 61 0 chr3 31285548 31285663 -128314120 - ORR1B1 LTR MaLR -272 122 1 5 823 2700 251 64 46 chr3 31285666 31286575 -128313208 + Lx5 LINE L1 5716 6640 -410 5 823 23 33 0 0 chr3 31287881 31287911 -128311872 + AT_rich Low_complexity Low_complexity 1 30 0 5 823 607 191 0 9 chr3 31288511 31288617 -128311166 + ORR1D2 LTR MaLR 8 112 -247 5 823 264 77 0 0 chr3 31288676 31288715 -128311068 + (TG)n Simple_repeat Simple_repeat 2 40 0 5 823 742 312 29 12 chr3 31288743 31288983 -128310800 - B4A SINE B4 -18 274 31 5 823 686 241 197 8 chr3 31288981 31289220 -128310563 + ORR1D2 LTR MaLR 87 370 0 5 823 186 115 0 0 chr3 31289249 31289275 -128310508 - MER5B DNA MER1_type -64 114 89 5 823 1025 252 43 25 chr3 31289331 31289608 -128310175 + B4 SINE B4 9 290 -2 5 823 209 265 0 0 chr3 31289623 31289672 -128310111 + GA-rich Low_complexity Low_complexity 3 51 0 5 823 1090 256 112 6 chr3 31290673 31290995 -128308788 + ORR1E LTR MaLR 4 359 0 5 823 656 285 60 63 chr3 31291172 31291295 -128308488 + Lx9 LINE L1 7216 7352 -292 5 823 444 19 0 0 chr3 31291295 31291348 -128308435 + (GA)n Simple_repeat Simple_repeat 2 54 0 5 823 656 285 60 63 chr3 31291348 31291654 -128308129 + Lx9 LINE L1 7353 7643 -1 5 823 1249 122 32 0 chr3 31291694 31291856 -128307927 + B2_Mm2 SINE B2 2 163 -32 5 823 195 42 0 0 chr3 31291856 31291880 -128307903 + (CAAT)n Simple_repeat Simple_repeat 2 25 0 5 823 1249 122 32 0 chr3 31291880 31291905 -128307878 + B2_Mm2 SINE B2 164 194 -1 5 823 1464 172 183 3 chr3 31293923 31294267 -128305516 - MTD LTR MaLR 0 419 14 5 823 504 0 0 0 chr3 31294376 31294432 -128305351 + (CAAAA)n Simple_repeat Simple_repeat 2 57 0 5 823 625 175 119 0 chr3 31294443 31294569 -128305214 + B1_Mur2 SINE Alu 3 143 -6 5 823 243 274 41 0 chr3 31294994 31295014 -128304769 + ID_B1 SINE B4 72 145 -77 5 823 304 143 0 39 chr3 31295014 31295065 -128304718 + PB1D9 SINE Alu 11 59 -61 5 823 602 159 0 0 chr3 31295117 31295224 -128304559 + B1_Mur3 SINE Alu 42 148 -1 5 823 360 0 0 0 chr3 31295417 31295457 -128304326 + (TC)n Simple_repeat Simple_repeat 2 41 0 5 823 198 0 0 0 chr3 31295457 31295478 -128304305 + (TG)n Simple_repeat Simple_repeat 1 22 0 5 823 452 254 24 24 chr3 31295493 31295618 -128304165 - MTEa LTR MaLR -49 330 206 5 823 236 200 15 44 chr3 31296273 31296341 -128303442 - MLT1I LTR MaLR -6 405 340 5 823 322 325 44 19 chr3 31296728 31296888 -128302895 + MLT2B1 LTR ERVL 3 166 -354 5 823 1369 218 65 23 chr3 31297165 31297517 -128302266 - ORR1D2 LTR MaLR -3 367 1 5 823 5436 223 53 18 chr3 31297517 31298840 -128300943 - ORR1D2-int LTR MaLR 0 1370 2 5 823 180 0 0 0 chr3 31298866 31298886 -128300897 + (TTG)n Simple_repeat Simple_repeat 2 21 0 5 823 428 191 0 0 chr3 31298889 31298973 -128300810 - B1_Mur3 SINE Alu 0 149 66 5 823 253 109 22 0 chr3 31298983 31299029 -128300754 + RLTR16 LTR ERVK 1 47 -458 5 823 2382 217 44 35 chr3 31299030 31299627 -128300156 + RLTR1D LTR ERV1 4 605 0 5 823 1590 216 47 38 chr3 31299627 31300074 -128299709 + RLTR16 LTR ERVK 43 493 -12 5 823 394 160 27 0 chr3 31300188 31300263 -128299520 - ORR1D1 LTR MaLR -6 368 292 5 823 1761 184 6 3 chr3 31300261 31300583 -128299200 - MTD LTR MaLR -33 386 64 5 823 267 253 13 0 chr3 31300569 31300644 -128299139 - ORR1D2-int LTR MaLR -1181 77 2 5 823 251 71 24 0 chr3 31300668 31300710 -128299073 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 5 823 665 165 0 0 chr3 31300728 31300843 -128298940 - B1_Mus2 SINE Alu 0 147 33 5 823 872 294 46 29 chr3 31300875 31301155 -128298628 - ORR1D2 LTR MaLR -83 287 3 5 823 591 134 42 0 chr3 31301158 31301300 -128298483 + (TCTA)n Simple_repeat Simple_repeat 4 151 0 5 823 446 308 45 8 chr3 31302791 31302925 -128296858 + ID_B1 SINE B4 78 216 -8 5 823 429 116 0 0 chr3 31303646 31303715 -128296068 + (TG)n Simple_repeat Simple_repeat 2 70 0 5 823 385 301 130 0 chr3 31303718 31303841 -128295942 - B3A SINE B2 -38 160 22 5 823 2066 126 7 108 chr3 31303980 31304408 -128295375 + ORR1B1 LTR MaLR 1 385 -9 5 823 1045 208 169 40 chr3 31305486 31305782 -128294001 - MTE2a LTR MaLR 0 379 46 5 823 207 0 0 0 chr3 31305782 31305805 -128293978 + (CA)n Simple_repeat Simple_repeat 2 24 0 5 823 305 182 0 0 chr3 31306051 31306117 -128293666 + L1_Mus3 LINE L1 6567 6632 -6 5 823 421 322 142 20 chr3 31306269 31306627 -128293156 - MLT1D LTR MaLR 0 505 104 5 823 898 305 106 33 chr3 31306797 31307248 -128292535 - RMER5 LTR ERV1 -2 532 49 5 823 451 301 41 7 chr3 31307420 31307567 -128292216 - RSINE1 SINE B4 -2 163 12 5 823 28 48 0 0 chr3 31308149 31308191 -128291592 + AT_rich Low_complexity Low_complexity 1 42 0 5 823 720 261 8 30 chr3 31308196 31308404 -128291379 - B3A SINE B2 -11 205 1 5 823 390 257 229 17 chr3 31308423 31308724 -128291059 - Helitron1Nb_Mam RC Helitron -698 418 54 5 823 540 0 0 0 chr3 31308745 31308805 -128290978 + (CA)n Simple_repeat Simple_repeat 2 61 0 5 823 329 279 121 90 chr3 31308981 31309237 -128290546 - MLT1G3 LTR MaLR -103 492 229 5 823 664 255 20 46 chr3 31309800 31309997 -128289786 + ID_B1 SINE B4 1 192 -32 5 823 332 169 265 34 chr3 31310064 31310211 -128289572 - Lx7 LINE L1 0 7696 7516 5 823 192 217 0 0 chr3 31310345 31310391 -128289392 + GA-rich Low_complexity Low_complexity 2 47 0 5 823 3178 164 70 11 chr3 31310441 31311094 -128288689 - RLTR17 LTR ERVK 0 692 1 5 823 742 253 101 38 chr3 31312414 31312681 -128287102 + B4A SINE B4 1 284 -8 5 823 1468 175 46 104 chr3 31313339 31313734 -128286049 + ORR1C2 LTR MaLR 1 372 -12 5 823 959 183 18 18 chr3 31313742 31313959 -128285824 + ORR1C2-int LTR MaLR 1 217 -1292 5 823 3737 166 33 6 chr3 31313944 31314731 -128285052 + ORR1C2-int LTR MaLR 570 1509 0 5 823 794 195 15 80 chr3 31314732 31314933 -128284850 + ORR1C2 LTR MaLR 2 189 -185 5 823 236 174 58 0 chr3 31314934 31315020 -128284763 + (TCTCTG)n Simple_repeat Simple_repeat 6 96 0 5 823 838 207 114 0 chr3 31315023 31315216 -128284567 + ORR1C2 LTR MaLR 164 378 0 5 823 510 179 11 0 chr3 31316109 31316204 -128283579 + MTC LTR MaLR 1 96 -325 5 823 668 224 22 12 chr3 31316411 31316647 -128283136 + L1VL4 LINE L1 800 1019 -5636 5 823 4675 160 66 48 chr3 31316639 31317608 -128282175 + Lx3C LINE L1 5988 6974 -2 5 823 5063 276 66 33 chr3 31317626 31319520 -128280263 + Lx7 LINE L1 5442 7409 -287 5 823 438 20 0 0 chr3 31319520 31319571 -128280212 + (TCTG)n Simple_repeat Simple_repeat 2 52 0 5 823 3922 158 24 7 chr3 31319605 31320312 -128279471 + RMER12B LTR ERVK 1 719 -685 5 823 3708 92 19 74 chr3 31320311 31320984 -128278799 - RMER17A LTR ERVK -115 636 1 5 823 498 107 113 28 chr3 31320984 31321090 -128278693 + RMER12B LTR ERVK 1046 1160 -244 5 823 539 271 76 16 chr3 31321074 31321258 -128278525 - MTE2b LTR MaLR -172 207 13 5 823 1609 221 36 3 chr3 31321444 31321807 -128277976 + MTD LTR MaLR 1 375 -44 5 823 313 351 57 36 chr3 31321819 31322011 -128277772 + LTR16C LTR ERVL 17 212 -277 5 823 204 40 0 0 chr3 31322073 31322098 -128277685 + (CAGA)n Simple_repeat Simple_repeat 3 27 0 5 823 421 323 70 58 chr3 31322518 31322761 -128277022 + LTR16C LTR ERVL 217 462 -27 5 823 1101 76 7 0 chr3 31323100 31323244 -128276539 - B1_Mus1 SINE Alu 0 148 4 5 823 393 253 252 6 chr3 31323266 31323425 -128276358 - B3A SINE B2 0 198 1 5 823 1395 145 0 0 chr3 31324475 31324696 -128275087 - URR1A DNA MER1_type 0 226 6 5 823 241 288 75 22 chr3 31325409 31325505 -128274278 - B1F SINE Alu -38 111 12 6 823 432 0 0 0 chr3 31325508 31325556 -128274227 + (CA)n Simple_repeat Simple_repeat 1 48 0 6 823 256 0 24 49 chr3 31325667 31325708 -128274075 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 6 823 772 229 40 36 chr3 31325781 31326034 -128273749 - RLTR11A2 LTR ERVK -267 260 7 6 823 188 222 130 0 chr3 31326145 31326199 -128273584 - L2b LINE L2 -1 3374 3314 6 824 513 256 30 96 chr3 31326422 31326710 -128273073 + L1VL1 LINE L1 45 491 -5927 6 824 316 211 48 14 chr3 31326713 31326806 -128272977 + L1Md_F LINE L1 678 757 -5862 6 824 1056 222 81 120 chr3 31326806 31327215 -128272568 + RLTR9C LTR ERVK 1 393 0 6 824 22915 111 11 3 chr3 31327258 31331077 -128268706 + L1Md_F LINE L1 710 4559 -1327 6 824 7424 58 0 0 chr3 31331080 31331979 -128267804 + L1_Mus1 LINE L1 5667 6565 -2 6 824 884 253 69 18 chr3 31332146 31332420 -128267363 - Lx8 LINE L1 -5 7468 7181 6 824 2748 28 138 0 chr3 31332465 31332826 -128266957 - IAPLTR2a LTR ERVK 0 411 1 6 824 221 176 0 38 chr3 31332920 31332973 -128266810 - B3 SINE B2 -82 134 84 6 824 299 151 19 0 chr3 31332968 31333021 -128266762 - B2_Mm2 SINE B2 -140 55 2 6 824 319 270 22 22 chr3 31333415 31333506 -128266277 + B3A SINE B2 3 93 -105 6 824 723 266 101 11 chr3 31334264 31334541 -128265242 + RMER15 LTR ERVL 274 575 0 6 824 476 16 0 16 chr3 31335088 31335150 -128264633 + (TC)n Simple_repeat Simple_repeat 2 62 0 6 824 482 125 23 0 chr3 31337236 31337324 -128262459 + (GGAA)n Simple_repeat Simple_repeat 3 92 0 6 824 212 185 19 0 chr3 31337313 31337367 -128262416 + A-rich Low_complexity Low_complexity 3 57 0 6 824 743 274 110 18 chr3 31337759 31337884 -128261899 + B4A SINE B4 2 143 -149 6 824 513 47 0 0 chr3 31337884 31337948 -128261835 + (GGAA)n Simple_repeat Simple_repeat 4 67 0 6 824 743 274 110 18 chr3 31337948 31338049 -128261734 + B4A SINE B4 144 248 -44 6 824 1772 214 47 0 chr3 31338054 31338441 -128261342 + MTD LTR MaLR 1 405 -14 6 824 369 304 70 0 chr3 31339095 31339266 -128260517 + Kanga1 DNA Tc2 1563 1745 0 6 824 214 109 0 61 chr3 31339684 31339733 -128260050 + GA-rich Low_complexity Low_complexity 5 50 0 6 824 222 143 0 0 chr3 31340143 31340192 -128259591 + (T)n Simple_repeat Simple_repeat 1 49 0 6 824 1225 28 0 0 chr3 31340200 31340342 -128259441 - B1_Mus2 SINE Alu -5 142 1 6 824 27 49 0 0 chr3 31340400 31340441 -128259342 + AT_rich Low_complexity Low_complexity 1 41 0 6 824 542 101 0 0 chr3 31340880 31340959 -128258824 - RLTR13C1 LTR ERVK 0 983 905 6 824 455 237 87 113 chr3 31340964 31341230 -128258553 - RLTRETN_Mm LTR ERVK -63 259 1 6 824 4323 48 27 22 chr3 31341230 31341824 -128257959 + RLTR13C1 LTR ERVK 215 811 -172 6 824 764 138 74 19 chr3 31341819 31341981 -128257802 + RLTRETN_Mm LTR ERVK 152 322 0 6 824 1539 95 0 5 chr3 31341981 31342202 -128257581 - RLTR13C1 LTR ERVK -763 220 1 6 824 34 65 0 0 chr3 31342338 31342400 -128257383 + AT_rich Low_complexity Low_complexity 1 62 0 6 824 415 270 92 26 chr3 31342416 31342568 -128257215 - RSINE1 SINE B4 -1 164 3 6 824 270 0 0 0 chr3 31342898 31342928 -128256855 + (TTAA)n Simple_repeat Simple_repeat 4 33 0 6 824 666 280 91 5 chr3 31343424 31343632 -128256151 - B4A SINE B4 -66 226 1 6 824 540 65 0 0 chr3 31343833 31343910 -128255873 + (TTTA)n Simple_repeat Simple_repeat 2 78 0 6 824 379 50 10 3 chr3 31343910 31343974 -128255809 - B1_Mm SINE Alu -2 145 53 6 824 183 182 0 0 chr3 31344430 31344463 -128255320 - L2c LINE L2 -16 3371 3339 6 824 318 50 0 0 chr3 31344809 31344849 -128254934 + (TCC)n Simple_repeat Simple_repeat 2 41 0 6 824 3951 68 26 2 chr3 31346140 31346640 -128253143 + RLTR1B LTR ERV1 1 512 0 6 824 16223 85 15 50 chr3 31346640 31349045 -128250738 + RLTR1B-int LTR ERV1 1 4006 -684 6 824 2702 29 0 0 chr3 31349055 31349361 -128250422 + RLTR1B-int LTR ERV1 2917 3222 -77 6 824 463 14 132 92 chr3 31349435 31349449 -128250334 + RLTR1B-int LTR ERV1 3221 3234 -65 6 824 2868 127 14 5 chr3 31349449 31349878 -128249905 - RLTR10C LTR ERVK -3 433 1 6 824 463 14 132 92 chr3 31349878 31349939 -128249844 + RLTR1B-int LTR ERV1 3235 3299 0 6 824 4045 62 22 2 chr3 31349939 31350441 -128249342 + RLTR1B LTR ERV1 1 512 0 6 824 493 286 0 16 chr3 31350441 31350569 -128249214 + ORR1E LTR MaLR 11 136 -223 6 824 465 239 0 0 chr3 31350579 31350759 -128249024 + CT-rich Low_complexity Low_complexity 1 180 0 6 824 264 77 0 0 chr3 31350797 31350836 -128248947 + (TCTCTG)n Simple_repeat Simple_repeat 4 42 0 6 824 417 221 180 44 chr3 31350842 31351048 -128248735 + ORR1E LTR MaLR 147 363 -7 6 824 186 43 0 0 chr3 31351845 31351868 -128247915 + (TTTA)n Simple_repeat Simple_repeat 3 25 0 6 824 645 250 47 7 chr3 31351871 31352020 -128247763 - RSINE1 SINE B4 -8 157 3 6 824 456 279 165 29 chr3 31352067 31352237 -128247546 - MLT2B4 LTR ERVL -363 193 1 6 824 1018 122 23 23 chr3 31352304 31352480 -128247303 - RMER10B LTR ERVL 0 398 223 6 824 372 273 35 21 chr3 31352633 31352775 -128247008 + LTR37A LTR ERV1 278 421 -5 6 824 3542 294 102 29 chr3 31352844 31353622 -128246161 - Lx8 LINE L1 -61 7412 6551 6 824 3873 62 58 0 chr3 31353622 31354106 -128245677 + RLTR1B LTR ERV1 1 512 0 6 824 3542 294 102 29 chr3 31354106 31354936 -128244847 - Lx8 LINE L1 -923 6550 5687 6 824 435 193 99 28 chr3 31354936 31355104 -128244679 - Lx8 LINE L1 -461 5419 5205 6 824 1125 76 14 0 chr3 31355113 31355257 -128244526 - B1_Mus1 SINE Alu -1 147 2 6 824 266 263 13 13 chr3 31355326 31355392 -128244391 - MTD LTR MaLR -59 360 295 6 824 1351 216 116 31 chr3 31355392 31355779 -128244004 - RMER16 LTR ERVK 0 533 114 6 824 927 228 92 18 chr3 31355801 31356082 -128243701 - MTD LTR MaLR -117 302 1 6 824 256 230 162 0 chr3 31356088 31356162 -128243621 - PB1D7 SINE Alu -17 103 18 6 824 360 278 61 0 chr3 31356096 31356211 -128243572 - ID_B1 SINE B4 -54 170 49 6 824 511 203 7 14 chr3 31356825 31356965 -128242818 + G-rich Low_complexity Low_complexity 4 142 0 6 824 745 210 180 100 chr3 31357274 31357613 -128242170 + RMER20B LTR ERVK 234 599 -28 6 824 1018 310 42 58 chr3 31357858 31358238 -128241545 + MTE2b LTR MaLR 1 374 -5 6 824 192 200 0 0 chr3 31359241 31359296 -128240487 + (TCTG)n Simple_repeat Simple_repeat 4 58 0 6 824 435 38 0 0 chr3 31359335 31359388 -128240395 + (TCTG)n Simple_repeat Simple_repeat 4 56 0 6 824 730 225 146 50 chr3 31359398 31359618 -128240165 + MTEb LTR MaLR 70 310 -69 6 824 504 0 0 0 chr3 31359630 31359686 -128240097 + (CA)n Simple_repeat Simple_repeat 1 56 0 6 824 241 157 96 41 chr3 31360231 31360304 -128239479 + L1M2 LINE L1 1686 1762 -5017 6 824 949 150 202 5 chr3 31360882 31361070 -128238713 + URR1A DNA MER1_type 1 225 -1 6 824 291 298 95 57 chr3 31361074 31361284 -128238499 + L1M2 LINE L1 2408 2625 -4224 6 824 429 267 136 6 chr3 31361369 31361531 -128238252 + L1_Mur3 LINE L1 3791 3973 -1907 6 824 2108 135 94 13 chr3 31361545 31361927 -128237856 - MTC LTR MaLR -8 413 1 6 824 1469 301 126 52 chr3 31361931 31362071 -128237712 + L1_Mur3 LINE L1 3979 4117 -1763 6 824 369 0 0 0 chr3 31362071 31362112 -128237671 + (TAAA)n Simple_repeat Simple_repeat 2 42 0 6 824 1469 301 127 52 chr3 31362112 31363447 -128236336 + L1_Mur3 LINE L1 4117 5639 -535 6 824 1415 191 97 0 chr3 31363540 31363838 -128235945 - Lx7 LINE L1 -695 7001 6675 6 824 281 26 26 0 chr3 31363857 31363895 -128235888 + (GA)n Simple_repeat Simple_repeat 2 40 0 6 824 381 252 0 0 chr3 31363929 31364080 -128235703 + (CA)n Simple_repeat Simple_repeat 2 152 0 6 824 1028 194 117 81 chr3 31364081 31364389 -128235394 - Lx7 LINE L1 -283 7413 7095 6 824 819 128 0 0 chr3 31364470 31364679 -128235104 + (GA)n Simple_repeat Simple_repeat 1 209 0 6 824 746 141 0 11 chr3 31364680 31364860 -128234923 + GA-rich Low_complexity Low_complexity 2 179 0 6 824 304 212 119 63 chr3 31364869 31364995 -128234788 + Lx7 LINE L1 7578 7678 -18 6 824 2169 163 74 0 chr3 31365511 31365903 -128233880 - MTC LTR MaLR 0 421 1 6 824 483 186 0 0 chr3 31365964 31366066 -128233717 + GA-rich Low_complexity Low_complexity 3 104 0 6 824 546 82 0 0 chr3 31366163 31366248 -128233535 + (TC)n Simple_repeat Simple_repeat 2 86 0 6 824 23 33 0 0 chr3 31366271 31366301 -128233482 + AT_rich Low_complexity Low_complexity 1 30 0 6 824 635 0 13 0 chr3 31366423 31366498 -128233285 + (TC)n Simple_repeat Simple_repeat 1 76 0 6 824 351 0 0 0 chr3 31366498 31366536 -128233247 + (CA)n Simple_repeat Simple_repeat 1 39 0 6 824 740 159 207 6 chr3 31366536 31366700 -128233083 + B3A SINE B2 2 198 0 6 824 575 303 50 22 chr3 31368060 31368242 -128231541 + B3A SINE B2 10 196 -2 6 824 427 292 84 114 chr3 31368270 31368664 -128231119 + MLT1B LTR MaLR 1 382 -8 6 824 279 219 16 0 chr3 31368710 31368774 -128231009 - MIR SINE MIR -18 244 180 6 824 38759 15 2 8 chr3 31368868 31374688 -128225095 + L1Md_A LINE L1 1 5586 -297 6 824 9104 9 0 0 chr3 31374688 31375684 -128224099 + L1Md_A LINE L1 5587 6582 0 6 824 526 318 34 27 chr3 31376120 31376382 -128223401 - MTD LTR MaLR -145 274 11 6 824 2230 193 74 12 chr3 31377235 31377738 -128222045 - RMER5 LTR ERV1 0 534 1 6 824 302 321 10 0 chr3 31377790 31377907 -128221876 - L1MA8 LINE L1 -357 5934 5817 6 824 904 265 149 19 chr3 31378103 31378275 -128221508 - ORR1D2 LTR MaLR 0 370 157 6 824 1266 149 36 31 chr3 31378275 31378497 -128221286 + URR1B DNA MER1_type 3 225 0 6 824 904 265 149 19 chr3 31378497 31378647 -128221136 - ORR1D2 LTR MaLR -214 156 7 6 824 207 139 0 0 chr3 31378747 31378783 -128221000 + (TTCTCC)n Simple_repeat Simple_repeat 1 36 0 6 824 414 0 0 0 chr3 31378787 31378833 -128220950 + (TG)n Simple_repeat Simple_repeat 2 47 0 6 824 498 246 0 26 chr3 31378844 31378961 -128220822 - RSINE1 SINE B4 -48 117 4 6 824 962 222 20 5 chr3 31379948 31380152 -128219631 - B3 SINE B2 -5 211 5 6 824 455 333 50 84 chr3 31380261 31380559 -128219224 - B4 SINE B4 -2 290 3 6 824 221 286 71 0 chr3 31381049 31381147 -128218636 - MIR SINE MIR -21 241 137 6 824 468 248 23 8 chr3 31381187 31381317 -128218466 - RMER5 LTR ERV1 0 534 403 6 824 388 37 19 0 chr3 31381330 31381384 -128218399 - HAL1-3A_ME LINE L1 -828 2030 1976 6 824 529 132 53 12 chr3 31381456 31381625 -128218158 + (TG)n Simple_repeat Simple_repeat 1 176 0 6 824 229 169 34 0 chr3 31381656 31381715 -128218068 + (TG)n Simple_repeat Simple_repeat 1 61 0 6 824 345 297 292 0 chr3 31381732 31381927 -128217856 - B4A SINE B4 -8 284 33 7 824 219 344 148 0 chr3 31382014 31382197 -128217586 + ID_B1 SINE B4 15 224 0 7 824 351 292 157 32 chr3 31382277 31382493 -128217290 - RMER5 LTR ERV1 -252 282 40 6 824 3388 33 2 20 chr3 31384070 31384473 -128215310 + MTA_Mm LTR MaLR 1 396 0 7 824 9101 43 4 1 chr3 31384473 31385567 -128214216 + MTA_Mm-int LTR MaLR 1 1097 -1 7 824 3469 20 2 20 chr3 31385568 31385971 -128213812 + MTA_Mm LTR MaLR 1 396 0 7 824 4937 66 9 6 chr3 31387014 31387657 -128212126 + L1Md_F2 LINE L1 5938 6582 0 7 824 492 296 40 17 chr3 31387672 31387847 -128211936 + MT2A LTR ERVL 293 471 -62 7 824 1041 247 71 11 chr3 31387889 31388171 -128211612 + Lx8 LINE L1 6731 7029 -444 7 824 845 180 82 10 chr3 31388193 31388389 -128211394 + RMER1A Other Other 821 1030 0 7 824 1066 294 30 0 chr3 31388416 31388715 -128211068 + Lx8 LINE L1 7050 7357 -116 7 824 192 310 115 49 chr3 31389320 31389442 -128210341 + MIRc SINE MIR 54 183 -85 7 824 2888 80 143 139 chr3 31389653 31390163 -128209620 + RLTR1B LTR ERV1 1 512 0 7 824 880 163 59 48 chr3 31390181 31390282 -128209501 + B2_Mm2 SINE B2 3 103 -92 7 824 6117 108 114 15 chr3 31390282 31391173 -128208610 + RLTR13C1 LTR ERVK 1 980 -3 7 824 880 163 59 48 chr3 31391173 31391258 -128208525 + B2_Mm2 SINE B2 104 191 -4 7 824 3649 187 41 18 chr3 31391366 31391910 -128207873 + RMER1B Other Other 1 882 -184 7 824 2070 130 34 28 chr3 31391910 31392235 -128207548 + ORR1A4 LTR MaLR 3 329 0 7 824 3649 181 39 18 chr3 31392235 31392408 -128207375 + RMER1B Other Other 883 1062 -4 7 824 1167 75 7 0 chr3 31392417 31392563 -128207220 + B1_Mm SINE Alu 1 147 0 7 824 777 314 123 85 chr3 31392579 31392961 -128206822 - Tigger6a DNA MER2_type -169 914 513 7 824 710 278 126 28 chr3 31392961 31393216 -128206567 - B4A SINE B4 -12 280 1 7 824 777 314 123 85 chr3 31393216 31393678 -128206105 - Tigger6a DNA MER2_type -571 512 38 7 824 182 196 119 51 chr3 31394075 31394134 -128205649 - L3 LINE CR1 -894 3595 3533 7 824 21 71 0 0 chr3 31395336 31395378 -128204405 + AT_rich Low_complexity Low_complexity 1 42 0 7 824 410 333 12 89 chr3 31395385 31395519 -128204264 - RSINE1 SINE B4 -1 164 39 7 824 3768 121 46 4 chr3 31395519 31396040 -128203743 - LTRIS2 LTR ERV1 0 564 21 7 824 207 0 0 0 chr3 31396040 31396063 -128203720 + (TTG)n Simple_repeat Simple_repeat 2 24 0 7 824 3768 121 46 4 chr3 31396063 31396082 -128203701 - LTRIS2 LTR ERV1 -544 20 2 7 824 410 333 12 89 chr3 31396082 31396115 -128203668 - RSINE1 SINE B4 -127 38 10 7 824 258 238 50 0 chr3 31396284 31396356 -128203427 + L1MD LINE L1 5595 5668 -691 7 824 306 0 0 0 chr3 31396356 31396390 -128203393 + (CA)n Simple_repeat Simple_repeat 2 35 0 7 824 362 154 141 0 chr3 31396397 31396475 -128203308 + Lx7 LINE L1 7085 7173 -523 7 824 248 127 0 31 chr3 31396499 31396564 -128203219 + T-rich Low_complexity Low_complexity 3 65 0 7 824 216 264 156 33 chr3 31396733 31396823 -128202960 - L3 LINE CR1 -3522 967 867 7 824 262 291 6 68 chr3 31398810 31398987 -128200796 + CT-rich Low_complexity Low_complexity 1 166 0 7 824 558 290 95 18 chr3 31399002 31399223 -128200560 - Lx8 LINE L1 -204 7269 7032 7 824 1778 135 64 47 chr3 31399292 31399634 -128200149 + ORR1B1 LTR MaLR 47 394 0 7 824 1270 285 39 49 chr3 31399648 31399714 -128200069 - Lx8 LINE L1 -564 6909 6847 7 824 857 226 79 70 chr3 31399714 31399894 -128199889 + B3 SINE B2 1 168 -48 7 824 549 0 0 0 chr3 31399894 31399955 -128199828 + (TCTA)n Simple_repeat Simple_repeat 2 62 0 7 824 857 226 79 70 chr3 31399955 31399988 -128199795 + B3 SINE B2 169 216 0 7 824 1270 285 39 49 chr3 31399988 31400353 -128199430 - Lx8 LINE L1 -627 6846 6482 7 824 200 287 175 19 chr3 31401363 31401466 -128198317 - L2a LINE L2 -20 3406 3288 7 824 803 207 33 20 chr3 31401543 31401696 -128198087 + B3A SINE B2 8 162 -36 7 824 378 0 0 0 chr3 31401697 31401739 -128198044 + (CA)n Simple_repeat Simple_repeat 1 42 0 7 824 226 274 78 39 chr3 31401784 31401913 -128197870 - L2a LINE L2 -261 3165 3032 7 824 216 246 0 32 chr3 31401968 31402031 -128197752 + CT-rich Low_complexity Low_complexity 1 61 0 7 824 1207 115 58 0 chr3 31402172 31402346 -128197437 - B2_Mm2 SINE B2 -10 185 2 7 824 630 0 0 0 chr3 31402561 31402631 -128197152 + (TC)n Simple_repeat Simple_repeat 1 70 0 7 824 249 246 131 0 chr3 31402866 31402927 -128196856 + ID4 SINE ID 2 70 -13 7 824 357 341 30 118 chr3 31403670 31403966 -128195817 - ORR1E LTR MaLR -1 358 89 7 824 430 241 187 13 chr3 31404209 31404444 -128195339 + Lx9 LINE L1 7351 7626 -18 7 824 1330 152 105 34 chr3 31406118 31406384 -128193399 + ORR1C2 LTR MaLR 99 383 -1 7 824 181 239 13 90 chr3 31406393 31406471 -128193312 - L2b LINE L2 -378 2997 2926 7 824 360 302 45 112 chr3 31406970 31407194 -128192589 + MLT1B LTR MaLR 126 334 -56 7 824 1526 302 53 2 chr3 31407231 31407794 -128191989 + MLT1B-int LTR MaLR 2 593 -778 7 824 453 285 122 6 chr3 31407809 31407989 -128191794 + MLT1B-int LTR MaLR 684 884 -487 7 824 486 0 0 0 chr3 31408216 31408270 -128191513 + (TTTTG)n Simple_repeat Simple_repeat 4 57 0 7 824 1427 312 60 20 chr3 31408682 31409319 -128190464 + Tigger7 DNA MER2_type 23 701 -4 7 824 1479 94 16 0 chr3 31409428 31409620 -128190163 + B2_Mm2 SINE B2 1 195 0 7 824 678 234 12 12 chr3 31409912 31410081 -128189702 + Lx7 LINE L1 7178 7346 -350 7 824 1528 175 59 31 chr3 31410939 31411228 -128188555 - Lx4A LINE L1 -126 6932 6636 7 824 3378 186 20 55 chr3 31411221 31412227 -128187556 - Lx4A LINE L1 -701 6357 5349 7 824 1621 146 22 22 chr3 31412261 31412528 -128187255 - Lx3A LINE L1 -6 6975 6709 7 824 1542 128 4 12 chr3 31412533 31412778 -128187005 - Lx3A LINE L1 -979 5994 5752 7 824 1964 168 88 3 chr3 31412791 31413167 -128186616 - Lx3A LINE L1 -515 5362 4955 7 824 4099 158 27 105 chr3 31413168 31413241 -128186542 - Lx3A LINE L1 -3652 2225 2158 7 824 4824 123 209 56 chr3 31413241 31414137 -128185646 + RLTR13D4 LTR ERVK 1 1033 0 7 824 4099 158 27 105 chr3 31414137 31414259 -128185524 - Lx3A LINE L1 -3720 2157 2050 7 824 219 88 0 0 chr3 31414259 31414293 -128185490 + (TG)n Simple_repeat Simple_repeat 1 34 0 7 824 4099 158 27 105 chr3 31414293 31414925 -128184858 - Lx3A LINE L1 -3828 2049 1486 7 824 900 44 0 0 chr3 31414925 31415038 -128184745 + (TTC)n Simple_repeat Simple_repeat 2 114 0 7 824 4099 151 14 42 chr3 31415038 31415385 -128184398 - Lx3A LINE L1 -4392 1485 1135 7 824 925 156 26 0 chr3 31415379 31415533 -128184250 - Lx2 LINE L1 -234 6763 6606 7 824 1679 218 9 72 chr3 31415531 31415582 -128184201 - Lx3A LINE L1 -5964 1122 1078 7 824 909 210 36 144 chr3 31415582 31415943 -128183840 - RLTRETN_Mm LTR ERVK 0 322 1 7 824 1679 218 9 72 chr3 31415943 31416347 -128183436 - Lx3A LINE L1 -6009 1077 696 7 824 1074 191 0 0 chr3 31416342 31416531 -128183252 + Lx3B LINE L1 6219 6407 -566 7 824 749 111 40 46 chr3 31416529 31416680 -128183103 - Lx3_Mus LINE L1 -879 6130 5981 7 824 3779 112 53 0 chr3 31416680 31417209 -128182574 + Lx3_Mus LINE L1 6450 7006 -3 7 824 315 203 78 0 chr3 31417222 31417286 -128182497 + Lx3B LINE L1 6389 6457 -516 7 824 1026 317 89 47 chr3 31417511 31417984 -128181799 + MTC-int LTR MaLR 520 1012 -246 7 824 3355 37 0 0 chr3 31417987 31418364 -128181419 - L1Md_F2 LINE L1 -3 6579 6203 7 824 29701 116 19 13 chr3 31418391 31424784 -128174999 - L1_Mus3 LINE L1 0 6638 219 7 824 578 232 81 0 chr3 31424785 31424970 -128174813 - Lx2A1 LINE L1 -1 7007 6808 7 824 9039 175 20 9 chr3 31424971 31426705 -128173078 + L1_Mur2 LINE L1 2655 4408 -1469 7 824 6505 108 63 10 chr3 31426696 31427882 -128171901 + L1_Mus3 LINE L1 5387 6631 -7 7 824 234 0 0 0 chr3 31427939 31427965 -128171818 + (CA)n Simple_repeat Simple_repeat 2 27 0 7 824 6031 164 92 4 chr3 31427965 31429121 -128170662 + L1_Mm LINE L1 4330 5586 -297 7 824 8686 156 21 14 chr3 31429333 31430961 -128168822 + Lx3B LINE L1 3864 5502 -384 7 824 1372 190 86 118 chr3 31430965 31431371 -128168412 - RLTR9C LTR ERVK 0 393 1 7 824 561 222 80 28 chr3 31431371 31431547 -128168236 - MMETn-int LTR ERVK 0 4844 4660 7 824 551 191 31 1 chr3 31431550 31431681 -128168102 - RLTR13B1 LTR ERVK -526 277 142 7 824 6581 169 28 24 chr3 31431681 31434303 -128165480 - ETnERV2-int LTR ERVK -203 7203 2493 7 824 36616 69 24 6 chr3 31434303 31440256 -128159527 - L1Md_F2 LINE L1 -1 6581 515 7 824 590 162 72 0 chr3 31440256 31440367 -128159416 - ETnERV2-int LTR ERVK -3846 3560 3442 7 824 841 135 7 20 chr3 31440910 31441061 -128158722 - RLTR13D1 LTR ERVK -156 650 502 7 824 1802 191 10 34 chr3 31441061 31441446 -128158337 - ETnERV2-int LTR ERVK -4403 3003 2628 7 824 6861 111 15 74 chr3 31441469 31442668 -128157115 - MMETn-int LTR ERVK -3714 1130 3 7 824 1181 193 99 128 chr3 31442672 31443077 -128156706 - RLTR9C LTR ERVK 0 393 1 7 824 4621 159 70 13 chr3 31443077 31443646 -128156137 + Lx3B LINE L1 5501 6093 -880 7 824 387 0 0 0 chr3 31443646 31443689 -128156094 + (TG)n Simple_repeat Simple_repeat 1 43 0 7 824 4213 181 91 36 chr3 31443689 31444246 -128155537 + Lx3B LINE L1 6094 6681 -292 7 824 27 73 0 0 chr3 31444598 31444653 -128155130 + AT_rich Low_complexity Low_complexity 1 55 0 7 824 347 337 33 33 chr3 31444818 31445033 -128154750 - Lx9 LINE L1 -847 6797 6583 7 824 618 259 46 17 chr3 31445183 31445422 -128154361 + Lx9 LINE L1 6805 7050 -594 7 824 1113 145 43 10 chr3 31445667 31445737 -128154046 - L1Md_F2 LINE L1 -13 6569 6497 7 824 423 0 0 0 chr3 31445737 31445784 -128153999 + (CA)n Simple_repeat Simple_repeat 1 47 0 7 824 1113 145 43 10 chr3 31445784 31445922 -128153861 - L1Md_F2 LINE L1 -86 6496 6355 7 824 28200 78 66 3 chr3 31445922 31449874 -128149909 - L1Md_F2 LINE L1 -345 6237 1978 7 824 255 61 0 0 chr3 31449874 31449907 -128149876 + (TTTG)n Simple_repeat Simple_repeat 3 35 0 7 824 28200 92 63 3 chr3 31449907 31450853 -128148930 - L1Md_F2 LINE L1 -3906 1977 1011 7 824 436 92 0 0 chr3 31450855 31450920 -128148863 - L1Md_F LINE L1 -5534 985 921 7 824 898 158 0 0 chr3 31450913 31451065 -128148718 - L1Md_F LINE L1 -6101 418 267 7 824 2121 111 10 3 chr3 31451342 31451650 -128148133 - IAPEY2_LTR LTR ERVK 0 357 48 7 824 586 0 27 0 chr3 31453060 31453134 -128146649 + (TA)n Simple_repeat Simple_repeat 1 76 0 7 824 339 85 0 0 chr3 31453251 31453298 -128146485 + (TA)n Simple_repeat Simple_repeat 2 48 0 7 824 3372 145 27 7 chr3 31453840 31454403 -128145380 + MT2B LTR ERVL 18 591 -10 7 824 2996 104 7 16 chr3 31454675 31455114 -128144669 + Lx3_Mus LINE L1 6575 7009 0 7 12 30614 101 9 7 chr3 31455312 31457796 -128141987 + L1Md_F2 LINE L1 467 2964 -2919 7 825 5031 52 8 0 chr3 31457796 31458416 -128141367 - L1Md_F2 LINE L1 0 6582 5958 7 825 30614 70 8 9 chr3 31458416 31461047 -128138736 + L1Md_F2 LINE L1 2965 5585 -298 7 825 7384 73 10 2 chr3 31461048 31462032 -128137751 + L1Md_F2 LINE L1 5587 6578 -4 7 825 22 56 0 0 chr3 31463207 31463243 -128136540 + AT_rich Low_complexity Low_complexity 1 36 0 7 825 183 42 0 0 chr3 31463524 31463548 -128136235 + (TG)n Simple_repeat Simple_repeat 1 24 0 7 825 312 70 0 0 chr3 31463681 31463724 -128136059 + (CA)n Simple_repeat Simple_repeat 2 44 0 7 825 237 211 0 0 chr3 31463726 31463783 -128136000 + (TA)n Simple_repeat Simple_repeat 2 58 0 7 825 249 108 0 0 chr3 31463994 31464031 -128135752 + (TA)n Simple_repeat Simple_repeat 2 38 0 7 825 304 50 0 0 chr3 31465616 31465679 -128134104 - L1Md_F2 LINE L1 0 6582 6524 7 825 486 188 0 0 chr3 31465679 31465764 -128134019 - Lx4A LINE L1 -214 6844 6760 7 825 1041 126 0 0 chr3 31465807 31465982 -128133801 + (TTTTC)n Simple_repeat Simple_repeat 2 176 0 7 825 1048 95 0 0 chr3 31465982 31466119 -128133664 - B1_Mus2 SINE Alu -9 138 2 7 825 1105 149 0 47 chr3 31466120 31466293 -128133490 - L1_Mur2 LINE L1 -3665 2212 2050 7 825 336 77 0 0 chr3 31466293 31466345 -128133438 + (TG)n Simple_repeat Simple_repeat 1 52 0 7 825 1105 149 0 47 chr3 31466345 31466403 -128133380 - L1_Mur2 LINE L1 -3828 2049 1992 7 825 1841 18 0 0 chr3 31466403 31466621 -128133162 + ORR1A0 LTR MaLR 1 218 -128 7 825 441 237 111 30 chr3 31466788 31466923 -128132860 - B1_Mur1 SINE Alu -3 146 1 7 825 3624 65 42 6 chr3 31466934 31467416 -128132367 - L1_Mus4 LINE L1 -4 6632 6134 7 825 2304 53 67 0 chr3 31467418 31467717 -128132066 + ORR1A1 LTR MaLR 28 346 0 8 825 1247 167 14 14 chr3 31467719 31467999 -128131784 - L1_Mur2 LINE L1 -3883 1994 1715 7 825 1205 348 36 26 chr3 31469043 31469982 -128129801 - ETnERV2-int LTR ERVK -455 7762 6814 8 825 292 271 34 54 chr3 31470409 31470557 -128129226 - ETnERV2-int LTR ERVK -1880 6337 6193 8 825 6853 170 66 30 chr3 31470659 31473032 -128126751 - ETnERV2-int LTR ERVK -1779 5465 1715 8 825 5500 61 10 7 chr3 31473088 31473944 -128125839 - L1Md_F2 LINE L1 -607 5975 5120 8 825 4411 68 3 21 chr3 31473946 31474552 -128125231 + L1Md_F2 LINE L1 5987 6581 -1 8 825 30 0 0 0 chr3 31474552 31474582 -128125201 + AT_rich Low_complexity Low_complexity 1 30 0 8 825 459 163 35 0 chr3 31474584 31474670 -128125113 - ETnERV2-int LTR ERVK -4229 1177 1089 8 825 2044 160 138 37 chr3 31474675 31475188 -128124595 - ETnERV2-int LTR ERVK -4587 819 255 8 825 351 44 0 0 chr3 31475191 31475236 -128124547 + (TC)n Simple_repeat Simple_repeat 1 45 0 8 825 320 326 87 23 chr3 31475937 31476201 -128123582 - L1MC3 LINE L1 -1361 6424 6144 8 825 242 268 149 48 chr3 31476240 31476448 -128123335 - Lx9 LINE L1 -18 7626 7398 8 825 495 256 22 67 chr3 31476475 31476655 -128123128 - Lx9 LINE L1 -474 7170 6999 8 825 1366 78 11 6 chr3 31476705 31476885 -128122898 - B2_Mm2 SINE B2 -14 181 1 8 825 971 193 181 13 chr3 31476928 31477154 -128122629 - MTD LTR MaLR -135 284 21 8 825 234 62 0 0 chr3 31477481 31477513 -128122270 + (TG)n Simple_repeat Simple_repeat 2 33 0 8 825 459 0 0 0 chr3 31477587 31477638 -128122145 + (TA)n Simple_repeat Simple_repeat 2 52 0 8 825 387 0 0 0 chr3 31477638 31477680 -128122103 + (TG)n Simple_repeat Simple_repeat 2 44 0 8 825 445 254 47 47 chr3 31477776 31477925 -128121858 + RSINE1 SINE B4 17 165 0 8 825 708 196 0 0 chr3 31477926 31478105 -128121678 + (CA)n Simple_repeat Simple_repeat 2 180 0 8 825 273 155 0 0 chr3 31478125 31478183 -128121600 + (CA)n Simple_repeat Simple_repeat 1 58 0 8 825 22 35 0 0 chr3 31478197 31478226 -128121557 + AT_rich Low_complexity Low_complexity 1 29 0 8 825 661 157 26 7 chr3 31478700 31478854 -128120929 + A-rich Low_complexity Low_complexity 2 158 0 8 825 305 303 43 52 chr3 31479234 31479349 -128120434 + PB1D10 SINE Alu 3 116 -1 8 825 4546 54 2 0 chr3 31479926 31480519 -128119264 + L1Md_F2 LINE L1 4993 5586 -297 8 825 8213 42 1 0 chr3 31480519 31481513 -128118270 + L1Md_F2 LINE L1 5587 6581 -1 8 825 554 261 92 18 chr3 31481529 31481693 -128118090 - MTE2a LTR MaLR -30 349 174 8 825 15028 57 12 1 chr3 31481726 31483749 -128116034 + L1Md_F2 LINE L1 3548 5586 -297 8 825 7991 49 8 1 chr3 31483749 31484736 -128115047 + L1Md_F2 LINE L1 5587 6580 -2 8 825 1899 174 72 32 chr3 31484938 31485342 -128114441 + MTC LTR MaLR 1 420 -1 8 825 441 237 111 30 chr3 31486158 31486293 -128113490 - B1_Mur1 SINE Alu -3 146 1 8 825 3676 56 42 6 chr3 31486304 31486786 -128112997 - L1_Mus4 LINE L1 -4 6632 6134 8 825 2204 48 82 0 chr3 31486788 31487081 -128112702 + ORR1A1 LTR MaLR 28 344 -2 8 825 659 341 48 54 chr3 31487133 31487465 -128112318 - MER68 LTR ERVL -8 555 226 8 825 6072 207 52 42 chr3 31487602 31488075 -128111708 - Lx7 LINE L1 0 7696 7261 8 825 264 100 0 0 chr3 31488075 31488115 -128111668 + (CCCTAA)n Simple_repeat Simple_repeat 1 40 0 8 825 6072 207 52 42 chr3 31488115 31489149 -128110634 - Lx7 LINE L1 -436 7260 6174 8 825 456 192 0 0 chr3 31489305 31489404 -128110379 + (TG)n Simple_repeat Simple_repeat 1 99 0 8 825 429 278 227 68 chr3 31489434 31489685 -128110098 - B4 SINE B4 0 292 2 8 825 252 0 0 0 chr3 31490009 31490037 -128109746 + (TC)n Simple_repeat Simple_repeat 1 28 0 8 825 501 17 0 0 chr3 31490037 31490094 -128109689 + (CA)n Simple_repeat Simple_repeat 1 58 0 8 825 254 245 0 0 chr3 31490323 31490372 -128109411 + B3A SINE B2 1 49 -149 8 825 1107 266 49 90 chr3 31490400 31490887 -128108896 + RLTR12B LTR ERVK 42 508 -20 8 825 457 224 62 39 chr3 31490870 31491000 -128108783 + B3A SINE B2 44 176 -22 8 825 590 241 13 27 chr3 31491154 31491303 -128108480 - MTE2a LTR MaLR 0 379 233 8 825 637 311 9 42 chr3 31491361 31491576 -128108207 + B4A SINE B4 85 292 0 8 825 2575 64 3 3 chr3 31491657 31491984 -128107799 + ORR1A2 LTR MaLR 1 327 0 8 825 14380 102 25 27 chr3 31492069 31494419 -128105364 + ETnERV2-int LTR ERVK 4404 7748 -469 8 825 3950 131 107 5 chr3 31494474 31495111 -128104672 + ETnERV2-int LTR ERVK 6494 7195 -211 8 825 425 140 711 14 chr3 31495264 31495406 -128104377 + ETnERV3-int LTR ERVK 5540 5780 -28 8 825 1795 172 54 24 chr3 31495416 31495886 -128103897 + RLTR13B1 LTR ERVK 1 537 -365 8 825 446 29 27 80 chr3 31495886 31495961 -128103822 + ETnERV2-int LTR ERVK 7329 7399 -7 8 825 1386 169 125 57 chr3 31495967 31496350 -128103433 + RLTR9E LTR ERVK 1 409 0 8 825 931 206 55 5 chr3 31496784 31496984 -128102799 + B3 SINE B2 2 211 -5 8 825 600 292 62 0 chr3 31497236 31497380 -128102403 + ID_B1 SINE B4 2 154 -70 8 825 297 336 28 18 chr3 31497748 31497857 -128101926 - RLTR18B LTR ERVK -2 510 401 8 825 591 100 11 0 chr3 31497857 31497947 -128101836 - URR1B DNA MER1_type 0 225 135 8 825 487 238 76 8 chr3 31498313 31498444 -128101339 - URR1B DNA MER1_type -82 143 4 8 825 2856 172 31 14 chr3 31498444 31498919 -128100864 - RLTR18 LTR ERVK -95 521 43 8 825 3053 132 132 0 chr3 31498919 31499435 -128100348 + MT2B2 LTR ERVL 1 584 0 8 825 2856 172 31 14 chr3 31499435 31499471 -128100312 - RLTR18 LTR ERVK -574 42 2 8 825 493 112 12 0 chr3 31499920 31500000 -128099783 - B2_Mm1t SINE B2 -7 186 106 8 825 594 122 0 0 chr3 31500000 31500082 -128099701 - B2_Mm2 SINE B2 -91 104 23 1 825 38 0 0 0 chr3 31500103 31500141 -128099642 + AT_rich Low_complexity Low_complexity 1 38 0 2 825 26 30 0 0 chr3 31500212 31500245 -128099538 + AT_rich Low_complexity Low_complexity 1 33 0 3 825 537 16 0 0 chr3 31500285 31500347 -128099436 + (TCTA)n Simple_repeat Simple_repeat 2 63 0 4 825 503 357 13 0 chr3 31500348 31500502 -128099281 - RSINE1 SINE B4 -6 159 4 5 825 234 186 119 0 chr3 31501183 31501242 -128098541 - MLT1J-int LTR MaLR -983 404 339 6 825 269 344 108 54 chr3 31501847 31502050 -128097733 + MIRb SINE MIR 28 241 -27 7 825 210 143 0 0 chr3 31502741 31502776 -128097007 + (A)n Simple_repeat Simple_repeat 1 35 0 8 825 363 280 155 72 chr3 31503030 31503211 -128096572 - B3A SINE B2 0 198 3 9 825 373 289 27 0 chr3 31503352 31503501 -128096282 - L1MD LINE L1 -1355 4791 4639 1 825 186 43 0 0 chr3 31503739 31503762 -128096021 + (T)n Simple_repeat Simple_repeat 1 23 0 1 825 351 336 98 29 chr3 31503821 31504066 -128095717 + MER90 LTR ERV1 1 262 -313 1 825 210 154 0 0 chr3 31504204 31504243 -128095540 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 1 825 245 216 0 33 chr3 31504245 31504315 -128095468 - B1_Mus2 SINE Alu 0 149 87 1 825 18387 73 6 8 chr3 31504315 31507758 -128092025 - L1Md_A LINE L1 -2217 3666 233 1 825 180 241 172 46 chr3 31507895 31507982 -128091801 - MER5A DNA MER1_type -79 110 13 1 825 184 319 58 29 chr3 31508095 31508234 -128091549 + MIR3 SINE MIR 56 198 -10 1 825 351 0 0 0 chr3 31508235 31508274 -128091509 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 825 1796 186 32 84 chr3 31508312 31508809 -128090974 - RLTR31_Mm LTR ERVK 0 561 95 1 825 462 18 0 0 chr3 31508809 31508864 -128090919 + (TC)n Simple_repeat Simple_repeat 2 56 0 2 825 1796 186 32 84 chr3 31508864 31508958 -128090825 - RLTR31_Mm LTR ERVK -467 94 2 1 825 294 125 0 0 chr3 31509046 31509094 -128090689 + (A)n Simple_repeat Simple_repeat 1 48 0 2 825 443 252 82 0 chr3 31509766 31509901 -128089882 - Lx6 LINE L1 -108 7352 7207 2 825 26 0 0 0 chr3 31510015 31510041 -128089742 + AT_rich Low_complexity Low_complexity 1 26 0 2 825 29 0 0 0 chr3 31510098 31510127 -128089656 + AT_rich Low_complexity Low_complexity 1 29 0 2 825 818 304 115 20 chr3 31510462 31510758 -128089025 - ORR1D2 LTR MaLR -46 324 1 2 825 252 0 0 0 chr3 31511465 31511493 -128088290 + (CA)n Simple_repeat Simple_repeat 2 29 0 2 825 207 0 0 0 chr3 31511501 31511524 -128088259 + (TG)n Simple_repeat Simple_repeat 1 23 0 2 825 431 333 11 0 chr3 31511537 31511711 -128088072 - Lx7 LINE L1 -394 7302 7127 2 825 1347 272 112 53 chr3 31511981 31512680 -128087103 + L1_Rod LINE L1 1337 2047 -3800 2 825 452 100 12 0 chr3 31512680 31512760 -128087023 + (CA)n Simple_repeat Simple_repeat 2 82 0 3 825 1347 272 112 53 chr3 31512760 31512890 -128086893 + L1_Rod LINE L1 2048 2215 -3632 2 825 1550 286 44 11 chr3 31512910 31513591 -128086192 + L1_Mur3 LINE L1 3 683 -7029 3 825 574 275 95 65 chr3 31513619 31514116 -128085667 + L1_Rod LINE L1 3289 3822 -2318 2 825 511 224 62 14 chr3 31514193 31514338 -128085445 - Lx9 LINE L1 -187 7457 7306 3 825 3313 245 65 38 chr3 31514470 31515236 -128084547 + L1_Rod LINE L1 4429 5212 -635 2 825 198 0 0 0 chr3 31515236 31515258 -128084525 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 3 825 3313 245 65 38 chr3 31515258 31515823 -128083960 + L1_Rod LINE L1 5213 5796 -51 2 825 995 103 0 0 chr3 31515825 31515971 -128083812 - L1_Mus4 LINE L1 -846 5790 5645 3 825 18325 101 6 14 chr3 31515999 31519667 -128080116 - L1_Mus1 LINE L1 -3 6564 2912 3 825 2367 212 131 89 chr3 31519667 31520525 -128079258 + RLTR13D6 LTR ERVK 1 894 -8 3 825 4238 115 1 0 chr3 31520526 31521198 -128078585 - L1_Mus1 LINE L1 -2966 2917 2245 3 825 2398 136 238 32 chr3 31521961 31522907 -128076876 + Lx LINE L1 4686 5912 -742 3 825 255 41 20 39 chr3 31523573 31523624 -128076159 + (TTTTG)n Simple_repeat Simple_repeat 2 51 0 3 825 4400 157 31 24 chr3 31523637 31524477 -128075306 - RLTR13A LTR ERVK 0 855 10 3 825 517 242 70 0 chr3 31524478 31524606 -128075177 - B1_Mur3 SINE Alu -11 138 2 4 825 227 133 22 0 chr3 31524621 31524666 -128075117 + (TG)n Simple_repeat Simple_repeat 1 46 0 4 825 241 316 0 0 chr3 31524708 31524765 -128075018 - B4A SINE B4 -14 278 222 4 825 279 338 80 18 chr3 31524794 31524878 -128074905 - B4 SINE B4 -117 175 87 4 825 201 39 0 0 chr3 31524878 31524904 -128074879 + (TTTTG)n Simple_repeat Simple_repeat 3 28 0 4 825 279 338 80 18 chr3 31524904 31524982 -128074801 - B4 SINE B4 -206 86 5 4 825 1527 241 45 47 chr3 31525070 31525619 -128074164 + Lx6 LINE L1 4893 5440 -440 4 825 219 103 0 0 chr3 31525645 31525684 -128074099 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 4 825 309 290 79 45 chr3 31525689 31525866 -128073917 + L1M3 LINE L1 5475 5657 -532 4 825 238 200 0 0 chr3 31525833 31525878 -128073905 + Lx6 LINE L1 5594 5638 -1822 4 825 827 229 93 0 chr3 31525883 31526066 -128073717 - ORR1D1 LTR MaLR -160 214 15 4 825 930 256 25 36 chr3 31526086 31526512 -128073271 + Lx8 LINE L1 5654 6083 -1613 4 825 2797 170 51 10 chr3 31526640 31526713 -128073070 + L1_Mur2 LINE L1 3413 3481 -2396 4 825 401 0 0 20 chr3 31526713 31526763 -128073020 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 5 825 2797 170 51 10 chr3 31526763 31527302 -128072481 + L1_Mur2 LINE L1 3482 4050 -1827 4 825 861 212 14 88 chr3 31527312 31527597 -128072186 + Lx5 LINE L1 6042 6305 -745 5 825 324 179 30 0 chr3 31529275 31529342 -128070441 - RMER19B LTR ERVK -142 760 692 5 825 2034 226 28 95 chr3 31530425 31531080 -128068703 + RMER19C LTR ERVK 1 611 0 5 825 1954 194 60 10 chr3 31531089 31531505 -128068278 + RMER10A LTR ERVL 3 439 -3 5 825 264 30 0 0 chr3 31531513 31531546 -128068237 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 5 825 203 0 0 36 chr3 31531556 31531584 -128068199 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 5 825 701 92 28 0 chr3 31531704 31531813 -128067970 + (GGGAGA)n Simple_repeat Simple_repeat 4 115 0 5 825 253 302 92 25 chr3 31533116 31533235 -128066548 - MIRc SINE MIR -111 157 31 5 825 1039 137 48 5 chr3 31533540 31533746 -128066037 - L1_Mur2 LINE L1 -2128 3749 3535 5 825 441 164 76 9 chr3 31533745 31533850 -128065933 - L1_Mur2 LINE L1 -3178 2699 2588 5 825 2738 205 18 7 chr3 31533850 31534419 -128065364 + Lx3B LINE L1 6393 6967 -6 6 825 630 274 46 23 chr3 31534716 31534933 -128064850 - Lx7 LINE L1 -1850 5846 5625 6 825 228 344 0 0 chr3 31535049 31535113 -128064670 - PB1D7 SINE Alu -56 64 1 6 825 393 267 23 38 chr3 31535113 31535240 -128064543 - PB1D10 SINE Alu -23 126 5 6 825 2021 119 19 19 chr3 31535621 31535930 -128063853 + RLTR27 LTR ERVK 1 309 0 6 825 362 45 7 0 chr3 31535954 31536007 -128063776 + RLTR10-int LTR ERVK 163 267 -7314 6 825 624 225 56 51 chr3 31536039 31536236 -128063547 + RLTR10-int LTR ERVK 655 852 -1135 6 825 259 250 0 62 chr3 31536237 31536318 -128063465 + GA-rich Low_complexity Low_complexity 5 80 0 6 825 180 111 0 0 chr3 31536540 31536567 -128063216 + (A)n Simple_repeat Simple_repeat 1 27 0 6 825 2625 293 46 43 chr3 31536591 31538463 -128061320 + MMERVK10C-int LTR ERVK 3267 5477 -2104 6 825 274 310 25 25 chr3 31538682 31538844 -128060939 + MMERVK10C-int LTR ERVK 6908 7069 -512 6 825 1348 172 0 26 chr3 31538967 31539235 -128060548 + MMERVK10C-int LTR ERVK 7321 7581 0 6 825 2065 111 10 22 chr3 31539235 31539548 -128060235 + RLTR27 LTR ERVK 1 309 0 6 825 291 71 0 0 chr3 31539721 31539763 -128060020 + (TTA)n Simple_repeat Simple_repeat 3 44 0 6 825 2956 165 16 15 chr3 31539766 31540312 -128059471 - Lx3A LINE L1 -7 6974 6428 7 825 513 283 92 22 chr3 31540327 31540695 -128059088 + L1_Mur3 LINE L1 1828 2221 -3659 7 825 345 210 133 8 chr3 31540730 31540850 -128058933 - Lx9 LINE L1 -311 7333 7199 7 825 1229 216 57 11 chr3 31540996 31541425 -128058358 - Lx7 LINE L1 -1362 4518 4072 6 825 279 321 0 71 chr3 31541586 31541727 -128058056 - MER44D DNA MER2_type -570 135 5 7 825 280 389 9 9 chr3 31541963 31542176 -128057607 - Lx9 LINE L1 -845 6799 6587 7 825 2899 26 35 0 chr3 31542445 31542793 -128056990 - L1Md_F3 LINE L1 -14 6570 6211 7 825 359 254 25 0 chr3 31542819 31542937 -128056846 + Lx9 LINE L1 6930 7050 -594 7 825 522 367 51 73 chr3 31543019 31543389 -128056394 + MTE2b LTR MaLR 3 364 -15 7 825 24 0 0 0 chr3 31543744 31543768 -128056015 + AT_rich Low_complexity Low_complexity 1 24 0 7 825 268 225 14 14 chr3 31544504 31544576 -128055207 + (TA)n Simple_repeat Simple_repeat 2 73 0 7 825 874 327 41 49 chr3 31545291 31545658 -128054125 + ORR1D2 LTR MaLR 3 366 -4 8 825 1061 284 86 27 chr3 31545671 31546008 -128053775 + MTD LTR MaLR 46 402 -17 8 825 246 136 0 0 chr3 31546141 31546185 -128053598 + (T)n Simple_repeat Simple_repeat 1 44 0 8 825 257 253 25 0 chr3 31546202 31546281 -128053502 - RMER1A Other Other -17 1013 933 8 825 360 164 0 0 chr3 31546538 31546605 -128053178 + (TA)n Simple_repeat Simple_repeat 2 68 0 8 825 279 0 0 0 chr3 31546610 31546641 -128053142 + (TG)n Simple_repeat Simple_repeat 2 32 0 8 825 324 0 0 0 chr3 31547408 31547444 -128052339 + (TC)n Simple_repeat Simple_repeat 1 36 0 8 825 189 0 0 0 chr3 31547446 31547467 -128052316 + (T)n Simple_repeat Simple_repeat 1 21 0 8 825 1254 34 0 0 chr3 31547467 31547613 -128052170 - B1_Mus2 SINE Alu 0 147 2 8 825 559 236 8 24 chr3 31548424 31548550 -128051233 + B1_Mur3 SINE Alu 8 131 -18 8 825 1170 81 2 7 chr3 31549853 31550035 -128049748 + L1_Mus1 LINE L1 5689 5848 -719 9 825 4346 22 0 0 chr3 31550035 31550528 -128049255 + MT2_Mm LTR ERVL 1 493 0 9 825 45679 16 1 0 chr3 31550528 31555895 -128043888 + MERVL-int LTR ERVL 1 5371 -114 9 825 343 139 26 53 chr3 31555895 31555971 -128043812 + ORR1A3-int LTR MaLR 567 640 -1323 9 825 302 0 0 0 chr3 31555971 31556009 -128043774 + MERVL-int LTR ERVL 5448 5485 0 9 825 4327 24 0 0 chr3 31556009 31556502 -128043281 + MT2_Mm LTR ERVL 1 493 0 9 825 5329 81 10 0 chr3 31556504 31557217 -128042566 + L1_Mus1 LINE L1 5846 6565 -2 9 825 777 270 39 48 chr3 31558779 31559114 -128040669 + Lx9 LINE L1 6863 7194 -450 9 825 23 33 0 0 chr3 31559417 31559447 -128040336 + AT_rich Low_complexity Low_complexity 1 30 0 9 825 2445 75 0 0 chr3 31561733 31562051 -128037732 + L1_Mus1 LINE L1 6250 6567 0 9 825 234 0 0 0 chr3 31562163 31562189 -128037594 + (TAGA)n Simple_repeat Simple_repeat 2 27 0 9 825 281 329 0 12 chr3 31563377 31563460 -128036323 + PB1D10 SINE Alu 13 94 -23 9 825 507 286 8 31 chr3 31564738 31564868 -128034915 - B3 SINE B2 -29 187 61 9 825 30 0 0 0 chr3 31565022 31565052 -128034731 + AT_rich Low_complexity Low_complexity 1 30 0 9 825 236 189 19 0 chr3 31566159 31566212 -128033571 + GA-rich Low_complexity Low_complexity 1 54 0 1 825 491 148 0 19 chr3 31566302 31566405 -128033378 + (TAGA)n Simple_repeat Simple_repeat 4 104 0 1 825 411 197 0 33 chr3 31566635 31566735 -128033048 + GA-rich Low_complexity Low_complexity 4 101 0 1 825 1041 93 23 6 chr3 31566735 31566907 -128032876 + (GAAA)n Simple_repeat Simple_repeat 4 178 0 1 825 411 197 0 33 chr3 31566907 31566927 -128032856 + polypurine Low_complexity Low_complexity 102 120 0 1 825 976 134 11 36 chr3 31566927 31567373 -128032410 + GA-rich Low_complexity Low_complexity 1 434 0 1 825 21487 113 13 11 chr3 31567589 31572233 -128027550 + Lx3_Mus LINE L1 2351 7001 -8 1 825 1020 95 9 1 chr3 31572650 31572816 -128026967 - B2_Mm2 SINE B2 -19 174 1 1 825 255 152 0 0 chr3 31573405 31573451 -128026332 + (TA)n Simple_repeat Simple_repeat 2 47 0 1 825 1887 123 64 13 chr3 31573977 31574290 -128025493 + MT2B LTR ERVL 18 346 -255 1 825 275 146 0 59 chr3 31574291 31574342 -128025441 + MT2B LTR ERVL 537 584 0 1 825 31160 70 1 6 chr3 31574557 31579807 -128019976 + L1Md_F2 LINE L1 265 5589 -297 1 825 8037 45 3 1 chr3 31579807 31580788 -128018995 + L1Md_F2 LINE L1 5590 6572 -13 1 825 2202 133 36 5 chr3 31580868 31581254 -128018529 + Lx3_Mus LINE L1 6575 6972 -37 1 825 1552 214 25 12 chr3 31582396 31582717 -128017066 + RLTR20D LTR ERVK 179 503 -65 1 825 181 243 64 51 chr3 31584002 31584080 -128015703 - L3 LINE CR1 -1675 2814 2736 1 825 234 62 0 0 chr3 31584088 31584120 -128015663 + (TG)n Simple_repeat Simple_repeat 1 32 0 1 825 279 0 0 0 chr3 31584265 31584296 -128015487 + (CA)n Simple_repeat Simple_repeat 1 31 0 1 825 207 171 0 0 chr3 31584440 31584475 -128015308 + (CA)n Simple_repeat Simple_repeat 2 36 0 1 825 343 0 237 90 chr3 31585030 31585186 -128014597 + (CAGAC)n Simple_repeat Simple_repeat 2 180 0 1 825 280 72 0 139 chr3 31585146 31585355 -128014428 + (CAGAGA)n Simple_repeat Simple_repeat 1 180 0 1 825 252 0 0 0 chr3 31585359 31585387 -128014396 + (CAGAC)n Simple_repeat Simple_repeat 2 29 0 1 825 248 412 0 0 chr3 31586217 31586331 -128013452 - PB1D10 SINE Alu -3 114 1 1 826 440 18 18 0 chr3 31589706 31589763 -128010020 + (TAGA)n Simple_repeat Simple_repeat 3 60 0 1 826 979 132 6 6 chr3 31589764 31589939 -128009844 + (GAAA)n Simple_repeat Simple_repeat 4 178 0 1 826 216 0 0 0 chr3 31590121 31590145 -128009638 + (CA)n Simple_repeat Simple_repeat 2 25 0 1 826 280 261 138 9 chr3 31590187 31590303 -128009480 + Lx6 LINE L1 6997 7127 -333 1 826 773 272 162 3 chr3 31590361 31590663 -128009120 - Lx6 LINE L1 -114 7346 6997 1 826 1437 187 20 34 chr3 31591442 31591735 -128008048 - Lx4A LINE L1 -132 6926 6638 1 826 4768 183 33 79 chr3 31591745 31592836 -128006947 - Lx4A LINE L1 -715 6343 5363 1 826 6808 152 33 3 chr3 31592836 31594024 -128005759 - Lx3A LINE L1 -9 6972 5750 1 826 4768 175 36 132 chr3 31594024 31594864 -128004919 - Lx4A LINE L1 -515 5362 4533 1 826 1027 156 9 9 chr3 31594863 31595077 -128004706 - Lx4A LINE L1 -2128 3749 3536 1 826 4295 145 25 21 chr3 31595079 31595702 -128004081 - Lx4A LINE L1 -3180 2697 2058 1 826 378 42 0 0 chr3 31595702 31595750 -128004033 + (TG)n Simple_repeat Simple_repeat 2 49 0 1 826 4295 145 25 21 chr3 31595750 31596016 -128003767 - Lx4A LINE L1 -3820 2057 1805 1 826 567 219 163 54 chr3 31596270 31596473 -128003310 + URR1A DNA MER1_type 2 226 0 1 826 1847 247 65 9 chr3 31596752 31597276 -128002507 + Lx4B LINE L1 6501 7053 -5 1 826 239 0 0 31 chr3 31597277 31597309 -128002474 + (TAA)n Simple_repeat Simple_repeat 1 31 0 1 826 2256 77 22 0 chr3 31598092 31598416 -128001367 - L1_Mus3 LINE L1 -506 6132 5802 1 826 25 31 0 0 chr3 31598541 31598573 -128001210 + AT_rich Low_complexity Low_complexity 1 32 0 1 826 594 216 6 100 chr3 31599954 31600124 -127999659 + ID_B1 SINE B4 71 224 0 1 826 1080 63 0 14 chr3 31599982 31600126 -127999657 + B1_Mm SINE Alu 6 147 0 1 826 36224 30 0 0 chr3 31600287 31606471 -127993312 - L1Md_T LINE L1 0 6585 305 1 826 1927 222 27 93 chr3 31606671 31607296 -127992487 + RLTR31A_Mm LTR ERVK 1 584 0 1 826 413 242 116 63 chr3 31607323 31607530 -127992253 + RMER3D-int LTR ERVK 26 243 -2599 1 826 359 318 46 8 chr3 31607572 31607702 -127992081 - RLTR41 LTR ERV1 -48 398 264 1 826 2303 29 0 4 chr3 31608068 31608343 -127991440 - L1Md_A LINE L1 0 6582 6309 1 826 306 259 35 70 chr3 31608544 31608772 -127991011 + RMER3D-int LTR ERVK 632 851 -1991 1 826 3538 184 34 12 chr3 31608794 31609642 -127990141 + RMER3D-int LTR ERVK 1015 1855 -987 1 826 3934 92 21 14 chr3 31609706 31610266 -127989517 + LTRIS2 LTR ERV1 1 564 0 1 826 771 152 108 12 chr3 31610926 31611092 -127988691 + RMER16-int LTR ERVK 145 326 -5080 1 826 4873 135 23 15 chr3 31611082 31611835 -127987948 + RMER16-int LTR ERVK 686 1444 -3962 1 826 7938 147 37 24 chr3 31611826 31614999 -127984784 + MuRRS4-int LTR ERV1 760 4266 -797 1 826 963 215 27 0 chr3 31615004 31615223 -127984560 + MuRRS4-int LTR ERV1 4797 5021 -42 1 826 4651 69 3 14 chr3 31615224 31615794 -127983989 + LTRIS2 LTR ERV1 1 564 0 1 826 2812 209 50 78 chr3 31615795 31616537 -127983246 + RMER16-int LTR ERVK 1978 2703 -139 1 826 1267 68 0 0 chr3 31616537 31616685 -127983098 - B1_Mus1 SINE Alu 0 148 1 1 826 2812 209 50 78 chr3 31616685 31616800 -127982983 + RMER16-int LTR ERVK 2704 2811 -31 1 826 300 27 0 0 chr3 31617701 31617738 -127982045 + (CAGA)n Simple_repeat Simple_repeat 2 38 0 1 826 451 149 20 10 chr3 31617978 31618080 -127981703 + GA-rich Low_complexity Low_complexity 3 105 0 1 826 1063 112 11 6 chr3 31618080 31618259 -127981524 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 1 826 450 0 0 0 chr3 31618264 31618314 -127981469 + (GGAA)n Simple_repeat Simple_repeat 4 53 0 1 826 1497 176 164 64 chr3 31618466 31618886 -127980897 + RMER16-int LTR ERVK 358 819 -4587 1 826 973 129 145 6 chr3 31618889 31619068 -127980715 + RMER16-int LTR ERVK 1078 1281 -4125 1 826 5688 70 43 0 chr3 31619070 31619983 -127979800 - L1Md_F2 LINE L1 -222 6360 5411 1 826 1695 44 0 0 chr3 31619981 31620186 -127979597 + L1_Mus1 LINE L1 6331 6535 -32 1 826 7976 233 17 28 chr3 31620277 31621202 -127978581 + ETnERV2-int LTR ERVK 4083 4988 -2418 1 826 188 35 35 0 chr3 31621202 31621231 -127978552 + (TTTG)n Simple_repeat Simple_repeat 3 32 0 1 826 7976 233 17 28 chr3 31621231 31621412 -127978371 + ETnERV2-int LTR ERVK 4989 5173 -2233 1 826 5895 55 17 6 chr3 31621412 31622124 -127977659 + L1Md_F2 LINE L1 5851 6570 -12 1 826 7976 233 17 28 chr3 31622124 31622746 -127977037 + ETnERV2-int LTR ERVK 5174 5792 -1614 1 826 1004 157 76 0 chr3 31622794 31622966 -127976817 + RMER16-int LTR ERVK 3791 3975 -1431 1 826 994 294 14 7 chr3 31623194 31623570 -127976213 + RLTR6-int LTR ERV1 7040 7664 -114 1 826 396 276 37 53 chr3 31623694 31623850 -127975933 + IAP-d-int LTR ERVK 6374 6510 -32 1 826 459 288 141 79 chr3 31623985 31624325 -127975458 + RLTR9A LTR ERVK 8 368 0 1 826 245 308 154 0 chr3 31624493 31624571 -127975212 - B3A SINE B2 -108 90 1 1 826 378 309 70 21 chr3 31624744 31625028 -127974755 + L1MC4a LINE L1 6956 7253 -629 1 826 7025 177 15 6 chr3 31625207 31626812 -127972971 + Lx4B LINE L1 4700 6325 -733 1 826 2378 126 3 0 chr3 31626812 31627138 -127972645 - ORR1A2 LTR MaLR 0 327 1 1 826 7025 203 43 13 chr3 31627138 31627838 -127971945 + Lx4B LINE L1 6326 7056 -2 1 826 2934 52 6 14 chr3 31628125 31628474 -127971309 - ORR1A1 LTR MaLR 0 346 1 1 826 806 272 23 36 chr3 31628657 31628878 -127970905 - B4 SINE B4 -73 219 2 1 826 3716 125 8 7 chr3 31629017 31629613 -127970170 - L1_Mur2 LINE L1 -887 4990 4394 1 826 4127 155 52 16 chr3 31629613 31630293 -127969490 + Lx4A LINE L1 6354 7057 -1 1 826 1285 301 98 14 chr3 31630391 31631119 -127968664 - L1MC1 LINE L1 -173 6160 5372 1 826 887 279 30 38 chr3 31631157 31631556 -127968227 - L1MC1 LINE L1 -856 5290 4895 1 826 547 280 84 71 chr3 31631580 31631956 -127967827 + RLTR12B LTR ERVK 47 381 -60 1 826 1617 161 117 31 chr3 31632837 31633163 -127966620 + ORR1B1 LTR MaLR 41 394 0 1 826 6853 174 38 90 chr3 31633163 31634741 -127965042 + ORR1B1-int LTR MaLR 1 1496 -467 1 826 685 119 10 0 chr3 31634741 31634842 -127964941 - Lx2 LINE L1 -133 6864 6763 1 826 5481 164 19 6 chr3 31634829 31635779 -127964004 - Lx2 LINE L1 -352 6645 5684 1 826 3504 125 4 0 chr3 31635794 31636299 -127963484 - L1_Mm LINE L1 0 5883 5377 1 826 1802 157 8 1 chr3 31636299 31636663 -127963120 + MYSERV6-int LTR ERVK 8613 8905 -54 1 826 8493 84 12 2 chr3 31636762 31637997 -127961786 - ORR1A1-int LTR MaLR -642 1321 1 1 826 2981 44 6 31 chr3 31637997 31638352 -127961431 - ORR1A1 LTR MaLR 0 346 1 1 826 21 36 0 0 chr3 31638584 31638612 -127961171 + AT_rich Low_complexity Low_complexity 1 28 0 1 826 546 272 94 14 chr3 31639121 31639433 -127960350 + MTD LTR MaLR 1 419 0 1 826 492 310 16 0 chr3 31640432 31640561 -127959222 - B3A SINE B2 -67 131 1 1 826 7470 100 2 0 chr3 31640658 31642402 -127957381 - L1_Mus1 LINE L1 0 6567 4820 1 826 12826 109 2 2 chr3 31642404 31644262 -127955521 + L1_Mus1 LINE L1 2924 4782 -1101 1 826 299 176 0 19 chr3 31644356 31644408 -127955375 - RLTR28 LTR ERVL -28 496 446 1 826 633 249 125 12 chr3 31644458 31644698 -127955085 - MYSERV16_I-int LTR ERVK -3245 2892 2626 1 826 3048 152 75 35 chr3 31645032 31645605 -127954178 - MT2B LTR ERVL 0 601 6 1 826 521 221 87 43 chr3 31645917 31646012 -127953771 - RLTR20C LTR ERVK 0 568 477 1 826 270 0 0 0 chr3 31646012 31646042 -127953741 + (CA)n Simple_repeat Simple_repeat 2 31 0 1 826 849 222 106 72 chr3 31646042 31646374 -127953409 - RLTR20C LTR ERVK -92 476 1 1 826 21 0 0 0 chr3 31646391 31646412 -127953371 + AT_rich Low_complexity Low_complexity 1 21 0 1 826 984 119 13 0 chr3 31646425 31646576 -127953207 - L1Md_A LINE L1 -6125 599 447 1 826 1511 50 0 0 chr3 31646576 31646757 -127953026 + L1Md_A LINE L1 6402 6582 0 1 826 1844 159 232 18 chr3 31646780 31647232 -127952551 - MYSERV16_I-int LTR ERVK -76 2250 1702 1 826 1973 180 74 10 chr3 31647212 31647604 -127952179 - MYSERV16_I-int LTR ERVK -1694 632 216 1 826 10005 23 0 0 chr3 31647604 31649428 -127950355 - L1Md_T LINE L1 -1 6581 4757 1 826 331 266 53 11 chr3 31649430 31649525 -127950258 - MYSERV16_I-int LTR ERVK -2103 223 125 1 826 819 250 0 50 chr3 31649498 31649759 -127950024 - RMER3D-int LTR ERVK -1461 1381 1134 1 826 430 265 104 22 chr3 31650851 31650921 -127948862 - RLTR20C LTR ERVK -20 514 446 1 826 525 32 0 0 chr3 31650921 31650984 -127948799 + (CA)n Simple_repeat Simple_repeat 2 64 0 1 826 740 244 405 14 chr3 31650984 31651297 -127948486 - RLTR20C LTR ERVK -89 445 3 1 826 1986 148 14 64 chr3 31651514 31651860 -127947923 + ORR1A4 LTR MaLR 1 329 0 1 826 457 304 7 7 chr3 31653378 31653524 -127946259 + MERVK26-int LTR ERVK 6470 6615 -304 1 826 4570 156 30 76 chr3 31654063 31654995 -127944788 + RLTR13D6 LTR ERVK 14 902 0 1 826 431 266 71 174 chr3 31655032 31655314 -127944469 - RLTR23 LTR ERV1 -170 260 8 1 826 1976 116 28 0 chr3 31655352 31655636 -127944147 + Lx LINE L1 6358 6649 -5 1 826 229 265 117 50 chr3 31655985 31656164 -127943619 - L1MA4A LINE L1 -103 6197 6007 1 826 571 256 97 25 chr3 31656204 31656467 -127943316 - L1MA4A LINE L1 -213 5961 5670 1 826 416 263 0 39 chr3 31656858 31656961 -127942822 + PB1D10 SINE Alu 5 103 -14 1 826 257 386 0 0 chr3 31656998 31657112 -127942671 + PB1D10 SINE Alu 2 115 -2 1 826 255 320 77 39 chr3 31657361 31657465 -127942318 + PB1D10 SINE Alu 10 117 0 1 826 330 238 16 0 chr3 31657468 31657531 -127942252 + ID4_ SINE ID 2 65 -18 1 826 670 287 40 73 chr3 31657987 31658288 -127941495 - B4A SINE B4 0 292 2 1 826 2403 225 31 82 chr3 31658729 31659372 -127940411 + RMER19C LTR ERVK 2 611 0 1 826 377 264 38 15 chr3 31659657 31659788 -127939995 - ORSL-2b DNA Tip100 -148 360 227 2 826 445 285 51 0 chr3 31659803 31659940 -127939843 + B4A SINE B4 2 145 -147 2 826 207 236 36 0 chr3 31659987 31660042 -127939741 + (CATG)n Simple_repeat Simple_repeat 2 58 0 2 826 330 123 0 0 chr3 31660462 31660519 -127939264 + (TG)n Simple_repeat Simple_repeat 1 57 0 2 826 881 275 68 36 chr3 31660527 31660806 -127938977 - B4A SINE B4 -2 290 3 2 826 2781 39 10 218 chr3 31661066 31661556 -127938227 - RLTR10 LTR ERVK -2 388 1 2 826 17011 31 1 1 chr3 31661558 31663505 -127936278 - RLTR10-int LTR ERVK -3 1984 39 2 826 2397 44 10 224 chr3 31663514 31664010 -127935773 - RLTR10 LTR ERVK 0 390 1 2 826 420 0 0 48 chr3 31664109 31664172 -127935611 + (TTTTG)n Simple_repeat Simple_repeat 2 61 0 2 826 847 287 24 36 chr3 31664760 31664975 -127934808 + B4 SINE B4 2 213 -79 2 826 438 69 0 0 chr3 31664975 31665033 -127934750 + (CACG)n Simple_repeat Simple_repeat 2 59 0 2 826 847 287 24 36 chr3 31665033 31665070 -127934713 + B4 SINE B4 214 251 -41 2 826 387 0 0 0 chr3 31665947 31665990 -127933793 + (CA)n Simple_repeat Simple_repeat 2 44 0 2 826 483 100 0 0 chr3 31665990 31666059 -127933724 + (TA)n Simple_repeat Simple_repeat 2 71 0 2 826 628 320 24 34 chr3 31667007 31667301 -127932482 - B4A SINE B4 0 292 2 2 826 387 289 128 10 chr3 31667340 31667536 -127932247 + MLT1B LTR MaLR 17 235 -155 2 826 209 204 0 0 chr3 31668517 31668566 -127931217 + T-rich Low_complexity Low_complexity 1 49 0 2 826 816 190 15 0 chr3 31668579 31668716 -127931067 + B1_Mus1 SINE Alu 2 140 -8 2 826 601 163 0 39 chr3 31668743 31668871 -127930912 - Lx6 LINE L1 -26 7434 7312 2 826 1039 147 0 6 chr3 31668873 31669044 -127930739 + B2_Mm2 SINE B2 1 170 -25 2 826 6779 207 84 16 chr3 31669054 31670526 -127929257 - Lx6 LINE L1 -143 7317 5747 2 826 279 151 113 0 chr3 31670522 31670575 -127929208 + Lx6 LINE L1 5644 5702 -178 2 826 536 232 134 53 chr3 31670575 31670784 -127928999 + B4 SINE B4 67 292 0 2 826 438 186 0 0 chr3 31670784 31670870 -127928913 + (CA)n Simple_repeat Simple_repeat 1 86 0 2 826 193 381 0 0 chr3 31670879 31670976 -127928807 + MER5A DNA MER1_type 63 159 -30 2 826 207 0 0 0 chr3 31670988 31671011 -127928772 + (T)n Simple_repeat Simple_repeat 1 23 0 2 826 1195 48 7 0 chr3 31671096 31671241 -127928542 + B1_Mus2 SINE Alu 1 146 -1 2 826 188 35 35 0 chr3 31671246 31671275 -127928508 + (CAAAAA)n Simple_repeat Simple_repeat 4 33 0 2 826 947 274 54 121 chr3 31671515 31671921 -127927862 + MTE2a LTR MaLR 1 379 0 2 826 836 178 0 0 chr3 31672098 31672244 -127927539 + L1Md_A LINE L1 192 337 -6282 2 826 36809 39 0 1 chr3 31672237 31677169 -127922614 + L1Md_A LINE L1 563 5589 -297 2 826 8710 26 1 0 chr3 31677169 31678162 -127921621 + L1Md_A LINE L1 5590 6583 -2 2 826 1597 198 79 36 chr3 31678736 31679128 -127920655 + MTD LTR MaLR 3 411 -8 2 826 385 178 60 78 chr3 31679236 31679352 -127920431 - Lx4B LINE L1 -4 7054 6941 2 826 196 292 0 0 chr3 31679675 31679723 -127920060 - L2c LINE L2 -7 3380 3333 2 826 315 0 0 0 chr3 31680674 31680709 -127919074 + (CA)n Simple_repeat Simple_repeat 1 35 0 2 826 263 211 0 0 chr3 31680799 31680856 -127918927 + MLT2B3 LTR ERVL 1 57 -458 2 826 917 309 34 21 chr3 31680884 31681211 -127918572 + MLT2B3 LTR ERVL 121 451 -103 2 826 525 32 0 0 chr3 31681259 31681322 -127918461 + (TCTA)n Simple_repeat Simple_repeat 4 66 0 2 826 2787 261 102 6 chr3 31682812 31683645 -127916138 + Lx8 LINE L1 6204 7116 -357 2 826 590 234 165 16 chr3 31683659 31683907 -127915876 + Lx8 LINE L1 7187 7471 -2 2 826 357 313 17 0 chr3 31684572 31684687 -127915096 + Lx8 LINE L1 6193 6309 -1164 2 826 907 259 76 73 chr3 31684775 31685166 -127914617 - MTE2a LTR MaLR 0 419 18 2 826 366 298 126 55 chr3 31685386 31685585 -127914198 + MER82 DNA MER2_type 304 516 -137 2 826 3392 99 15 17 chr3 31685798 31686340 -127913443 + RMER17B LTR ERVK 1 541 -417 2 826 1192 36 0 0 chr3 31686340 31686479 -127913304 - L1_Mm LINE L1 -321 5562 5424 2 826 2939 45 0 8 chr3 31686479 31686839 -127912944 + L1Md_F2 LINE L1 6208 6564 -18 2 826 414 0 0 0 chr3 31686839 31686885 -127912898 + (TAA)n Simple_repeat Simple_repeat 2 47 0 2 826 632 204 7 14 chr3 31686885 31687024 -127912759 + RMER17B LTR ERVK 524 661 -297 2 826 3302 117 6 2 chr3 31687025 31687520 -127912263 - L1_Mur2 LINE L1 -1432 4445 3949 2 826 6734 120 31 19 chr3 31687519 31688786 -127910997 + Lx LINE L1 5366 6654 0 2 826 7254 175 40 20 chr3 31689532 31691196 -127908587 - Lx5 LINE L1 -1 7049 5336 2 826 1208 248 43 54 chr3 31691513 31691863 -127907920 + MTEa LTR MaLR 34 379 0 2 826 180 0 0 0 chr3 31692207 31692227 -127907556 + (G)n Simple_repeat Simple_repeat 1 20 0 2 826 432 246 54 93 chr3 31693733 31694097 -127905686 + MTEb LTR MaLR 17 379 0 2 826 224 266 62 0 chr3 31694197 31694261 -127905522 - MIR3 SINE MIR -19 189 122 2 826 743 302 20 107 chr3 31694583 31694976 -127904807 - ORR1E LTR MaLR 0 359 1 2 826 891 229 68 5 chr3 31695915 31696121 -127903662 - ID_B1 SINE B4 -5 219 1 2 826 1068 210 9 26 chr3 31696289 31696519 -127903264 + URR1A DNA MER1_type 1 226 0 2 826 200 326 67 15 chr3 31696727 31696861 -127902922 - MIRb SINE MIR -1 267 127 2 826 420 289 18 0 chr3 31697095 31697209 -127902574 - PB1D7 SINE Alu -4 116 1 2 826 244 226 113 0 chr3 31699358 31699420 -127900363 - ID4 SINE ID 0 83 15 2 826 265 270 79 10 chr3 31699443 31699544 -127900239 - MTE2b LTR MaLR -9 370 263 2 826 482 238 34 155 chr3 31699708 31699947 -127899836 - MTE2b LTR MaLR -152 227 18 2 826 286 338 93 31 chr3 31700254 31700480 -127899303 - MLT1N2 LTR MaLR -227 335 96 2 826 314 206 16 0 chr3 31700496 31700559 -127899224 - MTE2b LTR MaLR -306 64 1 2 826 234 350 67 87 chr3 31700940 31700976 -127898807 + B4 SINE B4 72 218 -74 2 826 606 211 9 0 chr3 31700976 31701090 -127898693 + B1_Mur1 SINE Alu 27 141 -8 2 826 270 56 0 0 chr3 31701476 31701512 -127898271 + (CA)n Simple_repeat Simple_repeat 1 36 0 2 826 477 0 0 0 chr3 31701512 31701564 -127898219 + (GA)n Simple_repeat Simple_repeat 2 54 0 2 826 223 309 98 47 chr3 31701756 31701900 -127897883 + MIRb SINE MIR 29 182 -86 2 826 1211 262 55 11 chr3 31701903 31702250 -127897533 + MTEb LTR MaLR 1 362 -17 2 826 606 250 27 27 chr3 31703440 31703588 -127896195 + RSINE1 SINE B4 4 151 -14 2 826 465 50 0 0 chr3 31703890 31703950 -127895833 + (TG)n Simple_repeat Simple_repeat 2 61 0 2 826 333 0 0 0 chr3 31704287 31704324 -127895459 + (TG)n Simple_repeat Simple_repeat 1 37 0 2 826 1814 306 55 39 chr3 31704328 31705072 -127894711 - Lx8 LINE L1 -195 7278 6523 2 826 269 203 15 45 chr3 31705741 31705808 -127893975 + MTE2a LTR MaLR 78 142 -237 2 826 609 247 73 39 chr3 31705795 31706027 -127893756 + MT2A LTR ERVL 142 381 -152 2 826 236 362 97 12 chr3 31706140 31706305 -127893478 + MIRc SINE MIR 11 189 -79 2 826 2052 97 139 74 chr3 31708145 31708525 -127891258 + RLTR44A LTR ERVK 1 405 0 2 826 2098 154 41 11 chr3 31708674 31709041 -127890742 - ORR1C1 LTR MaLR 0 378 1 2 826 499 251 24 101 chr3 31709315 31709523 -127890260 + B3A SINE B2 1 192 -6 2 826 619 241 55 49 chr3 31709643 31709826 -127889957 + B4A SINE B4 5 188 -104 2 826 484 222 22 43 chr3 31709831 31710015 -127889768 + (CA)n Simple_repeat Simple_repeat 1 180 0 2 826 771 48 0 0 chr3 31710460 31710564 -127889219 + (TC)n Simple_repeat Simple_repeat 1 104 0 2 826 1003 168 127 0 chr3 31711842 31712039 -127887744 + URR1A DNA MER1_type 5 226 0 2 826 285 202 24 0 chr3 31712102 31712186 -127887597 - Lx5 LINE L1 0 7050 6965 2 826 288 0 0 0 chr3 31712432 31712464 -127887319 + (TC)n Simple_repeat Simple_repeat 2 33 0 2 826 333 0 0 0 chr3 31712464 31712500 -127887283 + (TG)n Simple_repeat Simple_repeat 2 38 0 2 826 428 283 92 0 chr3 31712808 31712928 -127886855 - B1F2 SINE Alu -7 142 12 2 826 214 262 12 48 chr3 31714574 31714658 -127885125 - ID4_ SINE ID 0 83 3 2 826 21 0 0 0 chr3 31714762 31714783 -127885000 + AT_rich Low_complexity Low_complexity 1 21 0 2 826 5566 103 19 21 chr3 31714783 31714957 -127884826 - Lx3A LINE L1 -4 6977 6816 2 826 4402 156 119 64 chr3 31714957 31715927 -127883856 + RLTR13D2 LTR ERVK 1 1023 0 2 826 5566 103 19 21 chr3 31715927 31716599 -127883184 - Lx3A LINE L1 -166 6815 6133 2 826 418 296 65 10 chr3 31716907 31717108 -127882675 + B3 SINE B2 5 216 0 2 103 16088 22 0 0 chr3 31718246 31720759 -127879024 - L1Md_A LINE L1 0 6582 4070 2 827 3425 13 0 0 chr3 31720764 31721146 -127878637 + L1Md_A LINE L1 5205 5586 -297 2 827 8755 23 1 1 chr3 31721146 31722142 -127877641 + L1Md_A LINE L1 5587 6582 0 2 827 21 0 0 0 chr3 31722143 31722164 -127877619 + AT_rich Low_complexity Low_complexity 1 21 0 2 827 24583 27 2 10 chr3 31722169 31726011 -127873772 - L1Md_A LINE L1 -1799 4084 279 2 827 7653 77 1 12 chr3 31726012 31727481 -127872302 - L1_Mus1 LINE L1 -9 6558 5113 2 827 1650 31 5 0 chr3 31727481 31727672 -127872111 - B2_Mm1a SINE B2 -1 192 1 2 827 7270 99 1 21 chr3 31727672 31727941 -127871842 - L1_Mus1 LINE L1 -771 5112 4847 2 827 1256 246 129 40 chr3 31729098 31729619 -127870164 - RMER2 LTR ERV1 0 567 1 2 827 498 14 42 0 chr3 31729642 31729713 -127870070 + (GA)n Simple_repeat Simple_repeat 1 74 0 2 827 3059 102 54 21 chr3 31733815 31734296 -127865487 - Lx LINE L1 0 6654 6158 2 827 312 246 209 134 chr3 31735053 31735373 -127864410 + RLTR42-int LTR ERVK 1541 1884 -3638 2 827 627 162 80 126 chr3 31735617 31735879 -127863904 + RLTR42-int LTR ERVK 1870 2119 -3403 2 827 289 210 48 0 chr3 31735902 31735964 -127863819 + MYSERV6-int LTR ERVK 7249 7313 -1646 2 827 284 187 53 0 chr3 31735967 31736042 -127863741 + RLTR42-int LTR ERVK 2041 2119 -3403 2 827 950 238 93 34 chr3 31736051 31736423 -127863360 + RLTR19-int LTR ERVK 2532 2891 -3246 2 827 591 204 88 82 chr3 31736486 31736668 -127863115 + RLTR19-int LTR ERVK 2896 3078 -3059 2 827 1559 200 70 137 chr3 31736904 31737559 -127862224 + RLTR19-int LTR ERVK 3421 4031 -2106 2 827 3555 25 0 0 chr3 31738382 31738778 -127861005 + MTA_Mm LTR MaLR 1 396 0 2 827 659 159 0 7 chr3 31738979 31739131 -127860652 + CT-rich Low_complexity Low_complexity 2 152 0 2 827 301 306 9 26 chr3 31739423 31739537 -127860246 - Tigger5 DNA MER2_type 0 2406 2295 2 827 189 89 0 62 chr3 31741432 31741480 -127858303 + (TATATG)n Simple_repeat Simple_repeat 4 48 0 2 827 181 118 39 0 chr3 31741957 31742008 -127857775 + A-rich Low_complexity Low_complexity 3 55 0 2 827 2097 191 81 20 chr3 31742717 31743214 -127856569 + RLTR11A2 LTR ERVK 1 527 0 2 827 385 264 18 9 chr3 31743354 31743465 -127856318 - RMER13B LTR ERVK -35 873 762 3 827 3485 154 13 58 chr3 31743466 31744141 -127855642 - RMER13B LTR ERVK -249 659 15 3 827 277 267 5 69 chr3 31744370 31744559 -127855224 + (TCTG)n Simple_repeat Simple_repeat 3 179 0 3 827 1586 167 118 12 chr3 31744678 31744999 -127854784 - ORR1B2 LTR MaLR -8 359 5 3 827 282 261 0 0 chr3 31746971 31747036 -127852747 + (TG)n Simple_repeat Simple_repeat 2 66 0 3 827 290 236 97 0 chr3 31747066 31747138 -127852645 - B1F2 SINE Alu -64 85 7 3 827 498 316 21 7 chr3 31747083 31747223 -127852560 - ID_B1 SINE B4 -82 142 1 3 827 430 283 58 0 chr3 31747267 31747405 -127852378 - B4 SINE B4 -146 146 1 3 827 244 182 164 0 chr3 31747824 31747879 -127851904 + ID_B1 SINE B4 145 208 -16 3 827 207 0 0 0 chr3 31747895 31747918 -127851865 + (GTTTG)n Simple_repeat Simple_repeat 2 24 0 3 827 229 196 0 51 chr3 31749486 31749545 -127850238 + MLT1C LTR MaLR 12 67 -400 3 827 369 0 0 0 chr3 31750949 31750990 -127848793 + (CTA)n Simple_repeat Simple_repeat 1 41 0 3 827 234 0 0 0 chr3 31750990 31751016 -127848767 + (TAA)n Simple_repeat Simple_repeat 3 28 0 3 827 438 331 54 36 chr3 31751042 31751208 -127848575 + B4A SINE B4 8 176 -116 3 827 276 267 0 0 chr3 31751209 31751340 -127848443 + (CA)n Simple_repeat Simple_repeat 2 132 0 3 827 3149 17 0 0 chr3 31751347 31751693 -127848090 - ORR1A0 LTR MaLR 0 346 1 3 827 193 338 62 12 chr3 31752182 31752263 -127847520 + L2b LINE L2 3225 3309 -66 3 827 2035 98 6 55 chr3 31753897 31754180 -127845603 + ORR1A2 LTR MaLR 1 272 -55 3 827 2111 61 3 35 chr3 31754180 31754470 -127845313 + L1_Mus2 LINE L1 6286 6566 0 3 827 2035 98 6 55 chr3 31754470 31754530 -127845253 + ORR1A2 LTR MaLR 273 327 0 3 827 499 269 122 86 chr3 31754744 31755081 -127844702 - MLT1B LTR MaLR -36 354 6 3 827 549 0 0 0 chr3 31755087 31755148 -127844635 + (TC)n Simple_repeat Simple_repeat 2 62 0 3 827 292 266 173 38 chr3 31755149 31755282 -127844501 - B4 SINE B4 -134 158 8 3 827 348 318 126 39 chr3 31755311 31755596 -127844187 - MLT1D LTR MaLR -115 390 81 3 827 5917 44 3 1 chr3 31755629 31756339 -127843444 + L1Md_F2 LINE L1 5871 6581 -1 3 827 1926 235 12 93 chr3 31756434 31757025 -127842758 - RMER19C LTR ERVK 0 611 69 3 827 267 31 0 0 chr3 31757030 31757062 -127842721 + (CA)n Simple_repeat Simple_repeat 2 33 0 3 827 1714 228 42 158 chr3 31757064 31757752 -127842031 - RMER19C LTR ERVK -3 608 1 3 827 1053 270 21 65 chr3 31760099 31760436 -127839347 - MTE2a LTR MaLR 0 379 58 3 827 299 221 15 0 chr3 31760436 31760504 -127839279 - MTE2a LTR MaLR -281 98 30 3 827 184 30 61 0 chr3 31761564 31761597 -127838186 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 3 827 867 77 1 22 chr3 31761606 31761757 -127838026 - B1_Mus1 SINE Alu 0 148 3 3 827 657 241 0 8 chr3 31761934 31762068 -127837715 + MTE2b LTR MaLR 173 305 -74 3 827 264 149 0 0 chr3 31762068 31762115 -127837668 + (CCA)n Simple_repeat Simple_repeat 2 48 0 3 827 21 36 0 0 chr3 31762982 31763010 -127836773 + AT_rich Low_complexity Low_complexity 1 28 0 3 827 293 303 10 39 chr3 31763489 31763592 -127836191 - MIR3 SINE MIR -11 197 98 3 827 227 288 27 14 chr3 31765438 31765512 -127834271 + ID4 SINE ID 9 83 0 3 827 345 109 0 0 chr3 31765721 31765776 -127834007 + (CATA)n Simple_repeat Simple_repeat 1 55 0 3 827 477 71 0 0 chr3 31766684 31766754 -127833029 + (TG)n Simple_repeat Simple_repeat 2 71 0 3 827 834 277 81 22 chr3 31769536 31769946 -127829837 - L1MA6 LINE L1 -30 6270 5837 3 827 321 26 0 0 chr3 31769946 31769984 -127829799 + (TG)n Simple_repeat Simple_repeat 2 39 0 3 827 379 250 21 21 chr3 31771117 31771211 -127828572 - RSINE1 SINE B4 -57 108 15 3 827 693 262 87 5 chr3 31771218 31771425 -127828358 - ID_B1 SINE B4 0 224 1 3 827 685 51 20 0 chr3 31771466 31771564 -127828219 + (TAGA)n Simple_repeat Simple_repeat 2 101 0 3 827 267 133 0 0 chr3 31771590 31771635 -127828148 + (TG)n Simple_repeat Simple_repeat 2 46 0 3 827 1089 276 25 45 chr3 31773742 31774095 -127825688 + MTEa LTR MaLR 34 379 0 3 827 405 0 0 0 chr3 31774412 31774457 -127825326 + (TC)n Simple_repeat Simple_repeat 2 46 0 3 827 954 26 0 0 chr3 31774457 31774573 -127825210 + (TG)n Simple_repeat Simple_repeat 2 118 0 3 827 786 273 39 39 chr3 31774587 31774869 -127824914 - B4 SINE B4 -8 284 3 3 827 944 161 0 4 chr3 31776601 31776861 -127822922 + CT-rich Low_complexity Low_complexity 1 258 0 3 827 185 323 95 16 chr3 31777278 31777404 -127822379 - L2c LINE L2 -146 3241 3106 3 827 1909 238 7 2 chr3 31777905 31778322 -127821461 - MTD LTR MaLR 0 419 1 3 827 425 304 6 48 chr3 31779258 31779424 -127820359 - B4A SINE B4 -130 162 4 3 827 453 19 0 0 chr3 31780696 31780750 -127819033 + (CA)n Simple_repeat Simple_repeat 1 54 0 3 827 2554 65 80 3 chr3 31780958 31781297 -127818486 - RLTR10B2 LTR ERVK 0 365 1 3 827 497 250 58 80 chr3 31782148 31782374 -127817409 + L1MA4 LINE L1 5685 5905 -395 3 827 200 34 0 33 chr3 31783220 31783250 -127816533 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 3 827 306 106 0 0 chr3 31785272 31785319 -127814464 + (TG)n Simple_repeat Simple_repeat 2 48 0 3 827 294 362 84 51 chr3 31785322 31785596 -127814187 - B4A SINE B4 -2 290 8 3 827 756 272 15 7 chr3 31785862 31786078 -127813705 - B3A SINE B2 0 216 2 3 827 235 283 33 0 chr3 31786323 31786383 -127813400 + B4A SINE B4 80 141 -151 3 827 391 208 83 28 chr3 31786332 31786441 -127813342 + PB1D7 SINE Alu 6 120 0 3 827 1254 269 48 62 chr3 31787060 31787540 -127812243 + Lx2B LINE L1 6505 6977 -23 3 827 1302 98 22 0 chr3 31787540 31787723 -127812060 - B2_Mm2 SINE B2 -7 188 2 3 827 514 216 20 0 chr3 31787739 31787841 -127811942 + B3 SINE B2 27 130 -86 3 827 980 275 117 32 chr3 31788124 31788627 -127811156 - Lx8 LINE L1 0 7473 6928 3 827 1016 282 56 0 chr3 31788710 31788994 -127810789 - MTE2b LTR MaLR -79 300 1 3 827 231 36 0 0 chr3 31789679 31789707 -127810076 + (CA)n Simple_repeat Simple_repeat 2 29 0 3 827 504 280 0 0 chr3 31790632 31790775 -127809008 + ID_B1 SINE B4 81 223 -1 3 827 773 243 28 0 chr3 31791144 31791321 -127808462 + B3 SINE B2 1 182 -34 3 827 268 333 0 0 chr3 31792385 31792475 -127807308 + (TG)n Simple_repeat Simple_repeat 1 90 0 3 827 346 306 85 71 chr3 31792492 31792773 -127807010 - B4 SINE B4 -5 287 3 3 827 1021 103 7 33 chr3 31793017 31793168 -127806615 + B1_Mus1 SINE Alu 2 148 0 3 827 442 288 114 38 chr3 31794241 31794259 -127805524 - B3A SINE B2 0 198 182 3 827 454 16 32 0 chr3 31794259 31794322 -127805461 + (TG)n Simple_repeat Simple_repeat 2 66 0 3 827 442 288 114 38 chr3 31794322 31794487 -127805296 - B3A SINE B2 -17 181 2 3 827 227 294 181 23 chr3 31794582 31794798 -127804985 - L1MA6 LINE L1 -73 6230 5981 3 827 320 322 71 16 chr3 31794872 31795181 -127804602 - RLTR15 LTR ERVK -33 326 1 3 827 397 254 176 1 chr3 31795267 31795497 -127804286 - L1MA6 LINE L1 -373 5927 5658 3 827 251 333 98 29 chr3 31795512 31795787 -127803996 - L1MC1 LINE L1 -377 5956 5663 3 827 334 266 18 18 chr3 31795819 31795930 -127803853 - MLT1A1 LTR MaLR 0 408 298 3 827 312 301 43 13 chr3 31796382 31796616 -127803167 - L1MC1 LINE L1 -900 5433 5191 3 827 185 286 63 25 chr3 31796762 31796841 -127802942 + MIRc SINE MIR 84 165 -103 3 827 980 262 51 87 chr3 31796843 31797119 -127802664 + B4 SINE B4 5 270 -22 3 827 349 311 9 28 chr3 31797257 31797366 -127802417 + PB1D10 SINE Alu 6 112 -5 3 827 348 127 0 0 chr3 31797847 31797902 -127801881 + (CA)n Simple_repeat Simple_repeat 2 56 0 3 827 203 211 0 71 chr3 31798522 31798578 -127801205 - MIRb SINE MIR -199 69 18 3 827 256 257 13 63 chr3 31798593 31798672 -127801111 + polypyrimidine Low_complexity Low_complexity 2 76 0 3 827 256 242 10 20 chr3 31798675 31798776 -127801007 + CT-rich Low_complexity Low_complexity 2 101 0 3 827 261 0 0 0 chr3 31798799 31798828 -127800955 + (CAAA)n Simple_repeat Simple_repeat 4 32 0 3 827 1668 233 54 31 chr3 31799402 31799924 -127799859 + RMER5 LTR ERV1 1 534 0 3 827 293 64 43 0 chr3 31802947 31802994 -127796789 + (CAAA)n Simple_repeat Simple_repeat 1 49 0 3 827 216 67 0 0 chr3 31803809 31803839 -127795944 + (CCCCCA)n Simple_repeat Simple_repeat 1 30 0 3 827 207 100 0 0 chr3 31804445 31804475 -127795308 + (CTTG)n Simple_repeat Simple_repeat 2 31 0 3 827 261 0 0 0 chr3 31804498 31804527 -127795256 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 3 827 424 282 46 29 chr3 31804948 31805123 -127794660 - B3A SINE B2 -19 179 2 3 827 199 200 42 28 chr3 31805722 31805794 -127793989 + L2 LINE L2 2834 2906 -513 3 827 706 122 0 0 chr3 31806820 31806927 -127792856 + B2_Mm2 SINE B2 1 107 -88 3 827 624 267 14 14 chr3 31807659 31807807 -127791976 + B1_Mur1 SINE Alu 2 149 0 3 827 303 28 0 0 chr3 31809533 31809569 -127790214 + (TG)n Simple_repeat Simple_repeat 1 36 0 3 827 404 294 50 106 chr3 31809691 31809870 -127789913 - B4 SINE B4 -112 180 12 3 827 260 324 165 22 chr3 31810326 31810461 -127789322 - B3A SINE B2 -35 163 6 3 827 547 256 181 13 chr3 31810842 31811079 -127788704 + B4 SINE B4 2 278 -14 3 827 378 57 0 0 chr3 31812082 31812135 -127787648 + (TG)n Simple_repeat Simple_repeat 2 54 0 3 827 420 20 0 0 chr3 31812808 31812857 -127786926 + (TC)n Simple_repeat Simple_repeat 1 49 0 3 827 1099 107 29 0 chr3 31812920 31813121 -127786662 - Lx2 LINE L1 -18 6982 6775 3 827 781 61 0 0 chr3 31813119 31813218 -127786565 - Lx2 LINE L1 -352 6645 6547 3 827 189 0 0 0 chr3 31813730 31813751 -127786032 + (CAAAA)n Simple_repeat Simple_repeat 1 21 0 4 827 180 111 0 0 chr3 31815104 31815131 -127784652 + (A)n Simple_repeat Simple_repeat 1 27 0 4 827 253 307 67 67 chr3 31815501 31815665 -127784118 + MIRb SINE MIR 63 226 -42 4 827 227 313 48 39 chr3 31816055 31816158 -127783625 + B3 SINE B2 100 203 -13 4 827 212 246 14 0 chr3 31816163 31816232 -127783551 + (CAGAGA)n Simple_repeat Simple_repeat 6 75 0 4 827 26 0 0 0 chr3 31816233 31816259 -127783524 + AT_rich Low_complexity Low_complexity 1 26 0 4 827 263 235 14 29 chr3 31816789 31816859 -127782924 - MIRc SINE MIR -117 151 83 4 827 204 40 0 0 chr3 31817106 31817131 -127782652 + (CA)n Simple_repeat Simple_repeat 1 25 0 4 827 195 42 0 0 chr3 31817184 31817208 -127782575 + (TA)n Simple_repeat Simple_repeat 2 25 0 4 827 285 177 38 0 chr3 31818420 31818499 -127781284 + (TA)n Simple_repeat Simple_repeat 2 83 0 4 827 509 332 58 39 chr3 31819163 31819423 -127780360 + B4 SINE B4 10 274 -18 4 827 519 31 0 0 chr3 31819488 31819553 -127780230 + (CA)n Simple_repeat Simple_repeat 1 65 0 4 827 231 291 51 0 chr3 31819928 31820007 -127779776 - ORR1E LTR MaLR -274 85 3 4 827 180 0 0 0 chr3 31821851 31821871 -127777912 + (A)n Simple_repeat Simple_repeat 1 20 0 4 827 408 40 0 0 chr3 31822848 31822898 -127776885 + (TG)n Simple_repeat Simple_repeat 2 51 0 4 827 2875 231 116 20 chr3 31823054 31823793 -127775990 + RMER1C Other Other 528 1337 -5 4 827 21 71 0 0 chr3 31824154 31824196 -127775587 + AT_rich Low_complexity Low_complexity 1 42 0 4 827 429 20 0 0 chr3 31824282 31824332 -127775451 + (GA)n Simple_repeat Simple_repeat 1 50 0 4 827 229 346 108 24 chr3 31825003 31825169 -127774614 - MIR SINE MIR -77 185 6 4 827 1000 245 0 27 chr3 31825840 31826062 -127773721 - B3 SINE B2 0 216 1 4 827 451 335 48 24 chr3 31826239 31826485 -127773298 + B4 SINE B4 2 253 -39 4 827 3980 122 34 40 chr3 31826485 31826940 -127772843 + RMER6A LTR ERVK 1 450 -306 4 827 5210 28 14 11 chr3 31826940 31827561 -127772222 + L1Md_F3 LINE L1 5961 6583 -1 4 827 3980 122 34 40 chr3 31827561 31827865 -127771918 + RMER6A LTR ERVK 451 756 0 4 827 200 353 0 0 chr3 31827887 31827955 -127771828 + (TATATG)n Simple_repeat Simple_repeat 3 70 0 4 827 486 119 0 0 chr3 31827957 31828041 -127771742 + (CA)n Simple_repeat Simple_repeat 1 84 0 4 827 729 34 0 0 chr3 31829424 31829512 -127770271 + (GA)n Simple_repeat Simple_repeat 1 88 0 4 827 254 329 126 77 chr3 31829985 31830232 -127769551 + B4A SINE B4 33 291 -1 4 827 230 304 0 0 chr3 31832593 31832649 -127767134 + (CA)n Simple_repeat Simple_repeat 1 56 0 4 827 927 235 25 0 chr3 31832683 31832879 -127766904 - B3 SINE B2 -3 213 13 4 827 200 94 31 0 chr3 31833121 31833153 -127766630 + (TTG)n Simple_repeat Simple_repeat 2 34 0 4 827 502 254 52 0 chr3 31833746 31833880 -127765903 + ID_B1 SINE B4 6 146 -78 4 827 280 225 37 12 chr3 31833891 31834053 -127765730 + (TA)n Simple_repeat Simple_repeat 2 167 0 4 827 270 0 0 0 chr3 31834104 31834134 -127765649 + (TG)n Simple_repeat Simple_repeat 2 31 0 4 827 1022 212 56 91 chr3 31834136 31834560 -127765223 - MT2A LTR ERVL -77 456 1 4 827 298 150 50 0 chr3 31834560 31834611 -127765172 + ID_B1 SINE B4 163 216 -8 4 827 966 166 106 30 chr3 31834654 31834853 -127764930 + B3 SINE B2 1 214 -2 4 827 519 291 64 88 chr3 31834916 31835213 -127764570 - ORR1E LTR MaLR -69 290 1 4 827 321 268 40 24 chr3 31835575 31835701 -127764082 + G-rich Low_complexity Low_complexity 2 129 0 4 827 1477 242 42 47 chr3 31836859 31837240 -127762543 - MTE2b LTR MaLR 0 379 1 4 827 303 240 19 11 chr3 31837485 31837575 -127762208 - ID4 SINE ID -57 95 7 4 827 265 324 0 0 chr3 31837720 31837788 -127761995 + polypurine Low_complexity Low_complexity 1 68 0 4 827 241 24 0 68 chr3 31837942 31837986 -127761797 + (GTTTG)n Simple_repeat Simple_repeat 2 42 0 4 827 312 275 22 11 chr3 31839614 31839706 -127760077 + GA-rich Low_complexity Low_complexity 3 95 0 4 827 299 80 12 62 chr3 31840685 31840765 -127759018 + A-rich Low_complexity Low_complexity 3 78 0 4 827 693 168 72 0 chr3 31841438 31841563 -127758220 + B1_Mus1 SINE Alu 2 135 -13 4 827 360 297 108 13 chr3 31841446 31841603 -127758180 + B4A SINE B4 94 265 -27 4 827 1243 243 70 39 chr3 31842218 31842713 -127757070 + RMER4B LTR ERVK 17 561 -24 4 827 33553 90 10 2 chr3 31842718 31845316 -127754467 + L1Md_F2 LINE L1 371 2994 -2889 4 827 3407 33 5 0 chr3 31845316 31845710 -127754073 - MTA_Mm LTR MaLR 0 396 1 4 827 33553 69 1 2 chr3 31845710 31848306 -127751477 + L1Md_F2 LINE L1 2995 5586 -297 4 827 7661 69 7 11 chr3 31848306 31849294 -127750489 + L1Md_F2 LINE L1 5587 6570 -12 4 103 386 257 9 35 chr3 31850469 31850582 -127749201 - Tigger5 DNA MER2_type 0 2406 2297 4 828 272 352 28 0 chr3 31850654 31850762 -127749021 - Tigger5 DNA MER2_type -2274 132 22 4 828 447 68 0 0 chr3 31853090 31853149 -127746634 + (CA)n Simple_repeat Simple_repeat 1 59 0 4 828 456 125 5 61 chr3 31855580 31855612 -127744171 + L1Md_F3 LINE L1 6033 6066 -518 4 828 3485 45 16 13 chr3 31855612 31856059 -127743724 - L1Md_F2 LINE L1 -1 6581 6134 4 828 456 97 0 65 chr3 31856059 31856116 -127743667 + L1Md_F2 LINE L1 6067 6123 -461 4 828 1021 112 24 0 chr3 31856719 31856889 -127742894 + (GAAA)n Simple_repeat Simple_repeat 1 174 0 4 828 673 12 23 0 chr3 31856910 31856996 -127742787 + (TAGA)n Simple_repeat Simple_repeat 2 89 0 4 828 681 76 0 0 chr3 31857387 31857479 -127742304 + (TC)n Simple_repeat Simple_repeat 1 92 0 4 828 495 0 0 0 chr3 31857484 31857539 -127742244 + (TG)n Simple_repeat Simple_repeat 1 55 0 4 828 225 269 154 0 chr3 31857547 31857593 -127742190 - B4 SINE B4 -18 274 217 4 828 204 67 0 0 chr3 31857593 31857623 -127742160 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 4 828 225 269 154 0 chr3 31857623 31857654 -127742129 - B4 SINE B4 -76 216 186 4 828 260 185 106 15 chr3 31857700 31857766 -127742017 - B4 SINE B4 -217 75 4 4 828 741 107 0 16 chr3 31857946 31858070 -127741713 - L1Md_F2 LINE L1 -13 6569 6448 4 828 3540 27 0 0 chr3 31859364 31859769 -127740014 - L1Md_T LINE L1 -1 6581 6177 4 828 379 226 127 154 chr3 31860721 31860941 -127738842 + ID_B1 SINE B4 3 216 -8 4 828 199 273 51 25 chr3 31862116 31862195 -127737588 - L2 LINE L2 -552 2867 2787 4 828 224 325 113 8 chr3 31862572 31862696 -127737087 - L2 LINE L2 -971 2448 2312 4 828 717 232 153 10 chr3 31864821 31865017 -127734766 + ID_B1 SINE B4 1 224 0 4 828 734 127 8 0 chr3 31865023 31865149 -127734634 + (GGGA)n Simple_repeat Simple_repeat 3 129 0 4 828 384 119 0 0 chr3 31865920 31865979 -127733804 + (CA)n Simple_repeat Simple_repeat 2 60 0 4 828 297 282 101 39 chr3 31866032 31866161 -127733622 - L1M3 LINE L1 -432 5739 5603 4 828 1247 41 0 0 chr3 31866194 31866341 -127733442 + B1_Mus2 SINE Alu 1 147 0 4 828 198 0 0 0 chr3 31866341 31866363 -127733420 + (A)n Simple_repeat Simple_repeat 1 22 0 4 828 4434 119 66 34 chr3 31866530 31867474 -127732309 + RMER17B LTR ERVK 8 958 0 4 828 240 133 49 16 chr3 31868740 31868801 -127730982 + T-rich Low_complexity Low_complexity 4 66 0 4 828 2208 271 16 9 chr3 31870617 31871165 -127728618 - Lx7 LINE L1 -635 7061 6510 4 828 871 252 31 78 chr3 31871163 31871261 -127728522 + Lx7 LINE L1 7114 7210 -486 4 828 207 0 0 0 chr3 31871261 31871284 -127728499 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 4 828 871 252 31 78 chr3 31871284 31871391 -127728392 + Lx7 LINE L1 7211 7314 -382 4 828 279 0 0 0 chr3 31871391 31871422 -127728361 + (TG)n Simple_repeat Simple_repeat 1 31 0 4 828 871 252 31 78 chr3 31871422 31871534 -127728249 + Lx7 LINE L1 7315 7417 -279 4 828 32 0 0 0 chr3 31871647 31871679 -127728104 + AT_rich Low_complexity Low_complexity 1 32 0 4 828 21 36 0 0 chr3 31871973 31872001 -127727782 + AT_rich Low_complexity Low_complexity 1 28 0 4 828 892 281 66 11 chr3 31872803 31873077 -127726706 + B4 SINE B4 2 290 -2 4 828 270 0 0 0 chr3 31873386 31873416 -127726367 + (TG)n Simple_repeat Simple_repeat 2 31 0 4 828 212 167 24 0 chr3 31873507 31873549 -127726234 + B3A SINE B2 23 65 -133 4 828 26 30 0 0 chr3 31873616 31873649 -127726134 + AT_rich Low_complexity Low_complexity 1 33 0 4 828 905 186 256 77 chr3 31874138 31874555 -127725228 + RMER1C Other Other 844 1335 -7 4 828 508 286 80 105 chr3 31875156 31875231 -127724552 + ORR1E LTR MaLR 1 84 -275 4 828 1352 200 66 35 chr3 31875231 31875578 -127724205 + ORR1E LTR MaLR 2 359 0 4 828 508 286 80 105 chr3 31875578 31875865 -127723918 + ORR1E LTR MaLR 85 353 -6 4 828 590 294 36 155 chr3 31877040 31877454 -127722329 - MLT1A0 LTR MaLR 0 365 1 4 828 222 105 0 0 chr3 31877692 31877730 -127722053 + (G)n Simple_repeat Simple_repeat 1 38 0 4 828 196 320 78 1 chr3 31878227 31878360 -127721423 - MIRc SINE MIR -5 257 122 4 828 29 28 0 0 chr3 31878364 31878400 -127721383 + AT_rich Low_complexity Low_complexity 1 36 0 4 828 275 293 12 24 chr3 31878428 31878512 -127721271 + GA-rich Low_complexity Low_complexity 3 85 0 4 828 6293 218 40 83 chr3 31879005 31880962 -127718821 - MYSERV16_I-int LTR ERVK -220 2957 1 4 828 483 228 22 73 chr3 31881023 31881160 -127718623 - B1_Mur3 SINE Alu -2 147 18 4 828 3428 130 8 8 chr3 31881932 31882459 -127717324 - RLTR11A2 LTR ERVK 0 527 1 4 828 23 33 0 0 chr3 31884530 31884560 -127715223 + AT_rich Low_complexity Low_complexity 1 30 0 4 828 846 329 12 4 chr3 31885500 31885750 -127714033 + B4A SINE B4 35 286 -6 4 828 231 103 0 0 chr3 31885785 31885824 -127713959 + (CA)n Simple_repeat Simple_repeat 2 40 0 4 828 918 307 60 4 chr3 31886408 31886689 -127713094 - MTE2b LTR MaLR 0 379 83 4 828 234 218 70 35 chr3 31886709 31886766 -127713017 - MTE2b LTR MaLR -276 103 45 4 828 350 242 20 29 chr3 31886748 31886850 -127712933 - MTE2b LTR MaLR -278 101 1 4 828 1898 117 17 0 chr3 31887880 31888180 -127711603 - ORR1A4 LTR MaLR -24 305 1 4 828 342 208 55 0 chr3 31888833 31889246 -127710537 + (TGGA)n Simple_repeat Simple_repeat 1 435 0 4 828 766 296 82 11 chr3 31891454 31891724 -127708059 + B4 SINE B4 2 290 -2 4 828 497 158 10 0 chr3 31891741 31891842 -127707941 + (CATA)n Simple_repeat Simple_repeat 1 102 0 4 828 217 312 0 0 chr3 31893235 31893299 -127706484 + B4A SINE B4 82 145 -147 4 828 257 307 11 19 chr3 31893250 31893367 -127706416 + B1F1 SINE Alu 12 126 -1 4 828 259 152 15 29 chr3 31893524 31893592 -127706191 + T-rich Low_complexity Low_complexity 4 70 0 5 828 4667 100 46 36 chr3 31893712 31894451 -127705332 - Lx LINE L1 0 6654 5909 5 828 3087 302 75 21 chr3 31894464 31895678 -127704105 - Lx8 LINE L1 -144 7329 6050 5 828 2925 187 85 77 chr3 31895714 31896224 -127703559 - Lx7 LINE L1 -4 7692 7227 5 828 1221 48 0 0 chr3 31896224 31896371 -127703412 - B1_Mm SINE Alu 0 147 1 5 828 2925 187 85 77 chr3 31896371 31896612 -127703171 - Lx7 LINE L1 -470 7226 6935 5 828 193 303 22 33 chr3 31897311 31897403 -127702380 + MIRc SINE MIR 55 145 -123 5 828 1258 273 107 18 chr3 31898167 31898782 -127701001 - L1MC LINE L1 -1019 5127 4458 5 828 423 0 0 0 chr3 31899161 31899208 -127700575 + (TC)n Simple_repeat Simple_repeat 2 48 0 5 828 306 0 0 0 chr3 31899208 31899241 -127700542 + (TG)n Simple_repeat Simple_repeat 1 34 0 5 828 627 39 0 0 chr3 31899242 31899320 -127700463 + (GA)n Simple_repeat Simple_repeat 1 78 0 5 828 349 298 9 37 chr3 31899481 31899589 -127700194 - RSINE1 SINE B4 -16 149 45 5 828 482 298 59 27 chr3 31899624 31899845 -127699938 - L1MC LINE L1 -1775 4371 4144 5 828 486 75 0 0 chr3 31899862 31899929 -127699854 + (TG)n Simple_repeat Simple_repeat 2 68 0 5 828 519 222 32 2 chr3 31899940 31900078 -127699705 - B3A SINE B2 -65 151 2 5 828 458 279 71 0 chr3 31900083 31900266 -127699517 - L1MC LINE L1 -1990 4156 3961 5 828 268 305 57 64 chr3 31901246 31901386 -127698397 - Lx8 LINE L1 -180 7293 7155 5 828 438 287 80 7 chr3 31902016 31902153 -127697630 + B1_Mur1 SINE Alu 3 149 0 5 828 3787 37 80 2 chr3 31902153 31902664 -127697119 + LTRIS2 LTR ERV1 14 564 0 5 828 705 18 35 18 chr3 31902801 31902914 -127696869 + (TG)n Simple_repeat Simple_repeat 1 115 0 5 828 1188 61 0 0 chr3 31904079 31904226 -127695557 + B1_Mus2 SINE Alu 1 147 0 5 828 189 0 0 0 chr3 31904238 31904259 -127695524 + (GA)n Simple_repeat Simple_repeat 2 22 0 5 828 260 170 64 0 chr3 31904423 31904470 -127695313 + PB1D10 SINE Alu 48 97 -20 5 828 235 167 33 22 chr3 31904496 31904588 -127695195 + (TG)n Simple_repeat Simple_repeat 1 93 0 5 828 399 41 0 0 chr3 31904627 31904676 -127695107 + (TTCTG)n Simple_repeat Simple_repeat 4 52 0 5 828 777 272 29 19 chr3 31904676 31904886 -127694897 - B4 SINE B4 -73 219 8 5 828 828 249 133 8 chr3 31905276 31905531 -127694252 + B4A SINE B4 1 287 -5 5 828 1286 27 0 0 chr3 31905875 31906022 -127693761 + B1_Mm SINE Alu 1 147 0 5 828 194 0 39 0 chr3 31906279 31906305 -127693478 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 5 828 437 0 19 0 chr3 31906830 31906883 -127692900 + (CA)n Simple_repeat Simple_repeat 2 55 0 5 828 180 0 0 0 chr3 31906883 31906903 -127692880 + (CCA)n Simple_repeat Simple_repeat 1 20 0 5 828 207 88 0 0 chr3 31906965 31906999 -127692784 + (TTTTTG)n Simple_repeat Simple_repeat 3 36 0 5 828 883 166 223 0 chr3 31907004 31907179 -127692604 - B3 SINE B2 0 216 3 5 828 216 0 0 0 chr3 31907605 31907629 -127692154 + (TCTG)n Simple_repeat Simple_repeat 1 24 0 5 828 384 277 11 0 chr3 31907652 31907746 -127692037 - PB1 SINE Alu -12 115 21 5 828 22 35 0 0 chr3 31907912 31907941 -127691842 + AT_rich Low_complexity Low_complexity 1 29 0 5 828 28 48 0 0 chr3 31907998 31908040 -127691743 + AT_rich Low_complexity Low_complexity 1 42 0 5 828 352 302 63 0 chr3 31908242 31908401 -127691382 - L1M5 LINE L1 -1848 4298 4130 5 828 336 111 0 0 chr3 31908663 31908717 -127691066 + (TG)n Simple_repeat Simple_repeat 2 55 0 5 828 228 35 0 0 chr3 31908776 31908805 -127690978 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 5 828 213 140 0 23 chr3 31909066 31909110 -127690673 + A-rich Low_complexity Low_complexity 1 43 0 5 828 557 324 0 7 chr3 31909218 31909367 -127690416 - B1_Mur2 SINE Alu -1 148 1 5 828 186 43 0 0 chr3 31910422 31910445 -127689338 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 5 828 443 235 31 0 chr3 31910478 31910576 -127689207 + PB1D10 SINE Alu 17 117 0 5 828 192 232 42 42 chr3 31911589 31911661 -127688122 - MIR SINE MIR -129 133 62 5 828 1036 157 0 0 chr3 31911948 31912126 -127687657 + URR1B DNA MER1_type 48 225 0 5 828 869 211 40 71 chr3 31912539 31912764 -127687019 + ID_B1 SINE B4 3 220 -4 5 828 210 190 0 87 chr3 31913022 31913218 -127686565 + (CTCA)n Simple_repeat Simple_repeat 2 180 0 5 828 1282 183 0 5 chr3 31913460 31913680 -127686103 + URR1A DNA MER1_type 8 226 0 5 828 581 300 30 26 chr3 31914697 31914964 -127684819 + RLTR6-int LTR ERV1 7460 7727 -51 5 828 2384 68 122 12 chr3 31915058 31915080 -127684703 + RLTR47_MM LTR ERV1 1 22 -510 5 828 4597 145 12 44 chr3 31915080 31915915 -127683868 - RLTR13C2 LTR ERVK 0 808 1 5 828 2384 68 122 12 chr3 31915915 31916295 -127683488 + RLTR47_MM LTR ERV1 23 447 -85 5 828 873 29 0 0 chr3 31916299 31916403 -127683380 + (GGA)n Simple_repeat Simple_repeat 3 106 0 5 828 287 313 50 10 chr3 31916427 31916527 -127683256 - RSINE1 SINE B4 -59 106 3 5 828 2470 136 21 24 chr3 31916852 31917274 -127682509 - MTC LTR MaLR 0 421 1 5 828 244 245 19 0 chr3 31917396 31917502 -127682281 + (TG)n Simple_repeat Simple_repeat 1 108 0 5 828 321 339 146 16 chr3 31917516 31917762 -127682021 - B4A SINE B4 -12 280 3 5 828 967 58 0 35 chr3 31919270 31919412 -127680371 - L1Md_F2 LINE L1 -8 6574 6438 5 828 3645 290 55 13 chr3 31919572 31920715 -127679068 - Lx8 LINE L1 -1 7472 6282 5 828 1284 198 195 14 chr3 31920715 31921059 -127678724 - MTD LTR MaLR -2 417 12 5 828 417 274 62 0 chr3 31921085 31921198 -127678585 - Lx8 LINE L1 -1186 6287 6168 5 828 288 283 55 73 chr3 31921402 31921566 -127678217 + RSINE1 SINE B4 5 165 0 5 828 201 131 43 21 chr3 31921569 31921616 -127678167 + (CAA)n Simple_repeat Simple_repeat 3 50 0 5 828 240 307 0 85 chr3 31921709 31921791 -127677992 + tRNA-Ala-GCY_ tRNA tRNA 1 75 0 5 828 389 252 111 19 chr3 31922344 31922537 -127677246 - MLT1H LTR MaLR 0 579 387 5 828 297 0 0 0 chr3 31923136 31923169 -127676614 + (A)n Simple_repeat Simple_repeat 1 33 0 5 828 217 167 12 49 chr3 31923508 31923590 -127676193 + GA-rich Low_complexity Low_complexity 3 81 0 5 828 414 85 0 0 chr3 31925842 31925901 -127673882 + (TG)n Simple_repeat Simple_repeat 2 60 0 5 828 290 256 248 0 chr3 31925910 31926031 -127673752 - B3A SINE B2 -46 152 2 5 828 261 0 0 0 chr3 31926241 31926270 -127673513 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 5 828 428 296 8 0 chr3 31926367 31926499 -127673284 + MLT1B LTR MaLR 21 153 -237 5 828 241 333 39 59 chr3 31926490 31926592 -127673191 - ID_B1 SINE B4 -117 107 8 5 828 276 312 0 20 chr3 31926851 31926949 -127672834 + MLT1B LTR MaLR 313 408 0 5 828 279 305 22 72 chr3 31926974 31927112 -127672671 + MLT1B LTR MaLR 251 381 -9 5 828 574 260 90 83 chr3 31927712 31928001 -127671782 - B4 SINE B4 0 292 2 5 828 396 152 0 0 chr3 31928048 31928147 -127671636 + (TAGA)n Simple_repeat Simple_repeat 2 100 0 5 828 818 219 19 6 chr3 31929748 31929820 -127669963 + ID SINE ID 8 81 -143 5 828 435 274 35 9 chr3 31929820 31929934 -127669849 + PB1D10 SINE Alu 1 117 0 5 828 699 216 139 11 chr3 31929949 31930106 -127669677 + B3 SINE B2 2 182 -34 5 828 462 49 0 0 chr3 31930106 31930167 -127669616 + (CATA)n Simple_repeat Simple_repeat 2 62 0 5 828 699 216 139 11 chr3 31930167 31930196 -127669587 + B3 SINE B2 183 212 -4 5 828 233 304 63 0 chr3 31930510 31930589 -127669194 + ID_B1 SINE B4 9 92 -132 5 828 561 137 0 0 chr3 31930616 31930733 -127669050 + (TAGA)n Simple_repeat Simple_repeat 4 120 0 5 828 291 263 0 0 chr3 31930973 31931091 -127668692 + (CA)n Simple_repeat Simple_repeat 1 118 0 5 828 377 97 68 27 chr3 31931112 31931186 -127668597 + HAL1-3A_ME LINE L1 1976 2052 -806 5 828 261 0 0 0 chr3 31931589 31931618 -127668165 + (A)n Simple_repeat Simple_repeat 1 29 0 5 828 1002 246 125 0 chr3 31932918 31933199 -127666584 + MTE2b LTR MaLR 63 378 -1 5 828 235 304 190 33 chr3 31933431 31933825 -127665958 + L2 LINE L2 1053 1508 -1911 5 828 283 305 104 22 chr3 31936230 31936364 -127663419 - B1F SINE Alu 0 149 5 5 828 829 134 0 45 chr3 31937007 31937140 -127662643 + B1_Mur4 SINE Alu 2 128 -22 5 828 397 138 0 24 chr3 31937142 31937224 -127662559 + GA-rich Low_complexity Low_complexity 2 81 0 5 828 207 88 0 0 chr3 31937431 31937465 -127662318 + (T)n Simple_repeat Simple_repeat 1 34 0 5 828 574 297 54 78 chr3 31938396 31938692 -127661091 - B4A SINE B4 -2 290 2 5 828 1742 209 64 3 chr3 31939443 31939803 -127659980 - Lx9 LINE L1 -201 7443 7062 5 828 237 83 0 0 chr3 31939837 31939873 -127659910 + (TG)n Simple_repeat Simple_repeat 2 37 0 5 828 282 288 14 157 chr3 31939888 31940028 -127659755 - RSINE1 SINE B4 -40 125 6 5 828 832 247 166 47 chr3 31940114 31940475 -127659308 + MTD LTR MaLR 2 405 -14 5 828 316 91 0 29 chr3 31940774 31940842 -127658941 + (TTTTTG)n Simple_repeat Simple_repeat 1 66 0 5 828 264 309 0 0 chr3 31940935 31941016 -127658767 + Tigger5 DNA MER2_type 2324 2404 -2 5 828 288 326 20 0 chr3 31941089 31941187 -127658596 + ID_B1 SINE B4 1 100 -124 5 828 216 310 0 0 chr3 31941300 31941358 -127658425 - MIR SINE MIR -66 142 85 5 828 618 14 0 0 chr3 31941592 31941663 -127658120 + (TCTA)n Simple_repeat Simple_repeat 4 74 0 5 828 922 258 47 22 chr3 31941922 31942199 -127657584 - ORR1E LTR MaLR 0 359 76 5 828 261 0 0 0 chr3 31942344 31942373 -127657410 + (TTTG)n Simple_repeat Simple_repeat 3 31 0 5 828 294 286 67 15 chr3 31942604 31942739 -127657044 - MER33 DNA MER1_type -165 159 18 5 828 411 336 0 29 chr3 31943117 31943255 -127656528 + RSINE1 SINE B4 8 141 -24 5 828 1349 258 51 3 chr3 31943611 31943945 -127655838 - Lx8 LINE L1 -252 7221 6872 6 828 902 113 0 7 chr3 31946057 31946200 -127653583 + (TTCC)n Simple_repeat Simple_repeat 4 145 0 6 828 227 295 0 114 chr3 31947392 31947406 -127652377 + MT2B2 LTR ERVL 156 233 -351 6 828 437 203 0 0 chr3 31947406 31947480 -127652303 + B1F SINE Alu 5 78 -71 6 828 409 294 20 7 chr3 31947805 31947952 -127651831 - MER2 DNA MER2_type -80 265 117 6 828 405 0 0 0 chr3 31948038 31948083 -127651700 + (CA)n Simple_repeat Simple_repeat 2 46 0 6 828 717 221 100 25 chr3 31948084 31948284 -127651499 - Lx8 LINE L1 -232 7241 7027 6 828 1008 296 56 63 chr3 31948404 31948657 -127651126 - Lx8 LINE L1 -967 6506 6258 6 828 3381 159 90 41 chr3 31948657 31949314 -127650469 + RLTR17 LTR ERVK 1 689 -3 6 828 1008 296 56 63 chr3 31949314 31949503 -127650280 - Lx8 LINE L1 -1216 6257 6067 6 828 180 0 0 0 chr3 31949768 31949788 -127649995 + (CA)n Simple_repeat Simple_repeat 2 21 0 6 828 686 275 19 29 chr3 31949850 31950113 -127649670 - Lx7 LINE L1 -1727 5917 5649 6 828 423 0 0 0 chr3 31950575 31950622 -127649161 + (GA)n Simple_repeat Simple_repeat 1 47 0 6 828 282 116 0 0 chr3 31951448 31951491 -127648292 + (GGGGA)n Simple_repeat Simple_repeat 3 45 0 6 828 576 239 110 44 chr3 31952251 31952479 -127647304 + B4A SINE B4 6 248 -44 6 828 264 122 0 0 chr3 31952511 31952552 -127647231 + (CACG)n Simple_repeat Simple_repeat 1 41 0 6 828 3217 47 29 0 chr3 31953941 31954326 -127645457 - MTA_Mm LTR MaLR 0 396 1 6 828 660 290 126 56 chr3 31955926 31956196 -127643587 - B4 SINE B4 -1 291 3 6 828 204 292 76 33 chr3 31956398 31956490 -127643293 + MIRb SINE MIR 127 222 -46 6 828 225 341 55 71 chr3 31957485 31957668 -127642115 - ORR1E LTR MaLR -176 183 4 6 828 268 308 123 20 chr3 31957794 31957940 -127641843 + MER5B DNA MER1_type 17 177 -1 6 828 402 326 52 6 chr3 31957963 31958136 -127641647 + MER57E2 LTR ERV1 28 208 -194 6 828 303 352 0 0 chr3 31958148 31958253 -127641530 + MER57E2 LTR ERV1 255 359 -43 6 828 501 17 0 0 chr3 31960525 31960583 -127639200 + (TG)n Simple_repeat Simple_repeat 2 59 0 6 828 628 245 19 25 chr3 31961029 31961188 -127638595 + RSINE1 SINE B4 3 160 -5 6 828 21 0 0 0 chr3 31961232 31961253 -127638530 + AT_rich Low_complexity Low_complexity 1 21 0 6 828 864 192 92 15 chr3 31962980 31963176 -127636607 + B3 SINE B2 2 212 -4 6 828 524 253 11 75 chr3 31963895 31964083 -127635700 - RMER15 LTR ERVL -16 559 384 6 828 362 221 8 61 chr3 31965339 31965604 -127634179 + G-rich Low_complexity Low_complexity 1 250 0 6 828 267 215 0 0 chr3 31966616 31966681 -127633102 + (TCTG)n Simple_repeat Simple_repeat 2 66 0 6 828 29 47 0 0 chr3 31967025 31967068 -127632715 + AT_rich Low_complexity Low_complexity 1 43 0 6 828 784 298 60 15 chr3 31967463 31967732 -127632051 - MT2A LTR ERVL 0 533 253 6 828 279 203 42 28 chr3 31967796 31967867 -127631916 - MTE2b LTR MaLR -307 72 1 6 828 1142 264 74 9 chr3 31969531 31969856 -127629927 + Lx8 LINE L1 7028 7373 -100 6 828 258 241 18 9 chr3 31969905 31970014 -127629769 + (CA)n Simple_repeat Simple_repeat 2 111 0 6 828 306 345 17 0 chr3 31971369 31971485 -127628298 + RSINE1 SINE B4 27 144 -21 6 828 516 32 0 0 chr3 31971499 31971561 -127628222 + (TG)n Simple_repeat Simple_repeat 2 63 0 6 828 272 289 58 46 chr3 31971840 31972014 -127627769 - L1MD LINE L1 -432 5747 5572 6 828 512 310 21 11 chr3 31972036 31972225 -127627558 - B4A SINE B4 -101 191 1 6 828 241 236 159 21 chr3 31972231 31972433 -127627350 - L1MD LINE L1 -925 5434 5205 6 828 282 269 21 51 chr3 31972556 31972688 -127627095 - L1MD LINE L1 -1178 4968 4837 6 828 509 299 98 24 chr3 31973062 31973405 -127626378 - L1MD LINE L1 -1324 4822 4433 6 828 606 304 39 30 chr3 31973482 31973787 -127625996 - L1MD LINE L1 -3335 2811 2504 6 828 323 295 0 54 chr3 31973841 31973952 -127625831 - RSINE1 SINE B4 -60 105 1 6 828 372 288 133 18 chr3 31973973 31974213 -127625570 - L1MEf LINE L1 -3642 2504 2243 6 828 232 264 0 0 chr3 31974256 31974309 -127625474 + (TATG)n Simple_repeat Simple_repeat 2 54 0 6 828 503 227 117 28 chr3 31974324 31974469 -127625314 - RSINE1 SINE B4 -4 161 4 6 828 35433 48 4 9 chr3 31974492 31975274 -127624509 - L1Md_F2 LINE L1 0 6582 5805 6 828 2306 120 85 83 chr3 31975274 31975755 -127624028 - RLTR45 LTR ERVK 0 482 1 6 828 35433 66 12 4 chr3 31975755 31976473 -127623310 - L1Md_F2 LINE L1 -79 5804 5047 6 828 3988 46 60 8 chr3 31976473 31976960 -127622823 + LTRIS3 LTR ERV1 1 512 0 6 103 35433 83 13 10 chr3 31976960 31981594 -127618189 - L1Md_F2 LINE L1 -837 5046 457 6 829 306 256 136 21 chr3 31981612 31981752 -127618031 - L1MEf LINE L1 -4017 2225 2070 6 829 198 0 0 0 chr3 31981808 31981830 -127617953 + (A)n Simple_repeat Simple_repeat 1 22 0 6 829 315 330 0 11 chr3 31981830 31981922 -127617861 - PB1D10 SINE Alu -13 104 14 6 829 596 264 21 7 chr3 31982035 31982176 -127617607 - RSINE1 SINE B4 -21 144 2 6 829 464 0 18 0 chr3 31982310 31982366 -127617417 + (TTTTG)n Simple_repeat Simple_repeat 2 58 0 6 829 691 70 5 0 chr3 31982366 31982472 -127617311 - B1_Mus2 SINE Alu -10 110 1 6 829 233 304 66 54 chr3 31982490 31982517 -127617266 - L1MEf LINE L1 -4602 1640 1616 6 829 1798 201 94 5 chr3 31982517 31982898 -127616885 - MTD LTR MaLR 0 419 5 6 829 233 304 66 54 chr3 31982898 31983037 -127616746 - L1MEf LINE L1 -4627 1615 1472 6 829 793 219 83 0 chr3 31983274 31983466 -127616317 + ID_B1 SINE B4 16 223 -1 6 829 239 194 14 69 chr3 31983467 31983539 -127616244 + GA-rich Low_complexity Low_complexity 4 71 0 6 829 306 0 0 0 chr3 31983641 31983675 -127616108 + (TC)n Simple_repeat Simple_repeat 1 34 0 6 829 623 293 55 29 chr3 31984126 31984400 -127615383 + MLT1D LTR MaLR 1 281 -224 6 829 459 182 32 40 chr3 31986299 31986425 -127613358 - MTEa LTR MaLR 0 379 255 6 829 380 267 117 0 chr3 31986490 31986610 -127613173 - MTEa LTR MaLR -237 142 9 6 829 342 0 0 0 chr3 31986718 31986756 -127613027 + (CA)n Simple_repeat Simple_repeat 1 38 0 6 829 637 250 52 21 chr3 31987186 31987378 -127612405 + B3A SINE B2 1 198 0 6 829 226 136 51 0 chr3 31988430 31988489 -127611294 + (TTTAA)n Simple_repeat Simple_repeat 3 64 0 6 829 233 311 27 0 chr3 31988961 31989035 -127610748 - MER2B DNA MER2_type -259 77 2 6 829 328 222 0 27 chr3 31990578 31990652 -127609131 + ID4_ SINE ID 3 74 -9 6 829 278 308 136 26 chr3 31991146 31991419 -127608364 + L1MA7 LINE L1 5988 6290 -1 6 829 964 289 19 15 chr3 31991446 31991695 -127608088 + B4 SINE B4 20 271 -21 6 829 456 91 0 0 chr3 31991695 31991761 -127608022 + (CATA)n Simple_repeat Simple_repeat 1 66 0 6 829 680 136 8 0 chr3 31992820 31992945 -127606838 + (TA)n Simple_repeat Simple_repeat 2 127 0 6 829 7973 57 8 1 chr3 31992949 31994261 -127605522 - L1Md_F2 LINE L1 -3 6579 5256 6 829 2639 258 138 18 chr3 31994596 31995476 -127604307 - Lx6 LINE L1 -103 7357 6162 6 829 1532 254 41 3 chr3 31995950 31996313 -127603470 - MTEb LTR MaLR -2 377 1 6 829 243 51 0 0 chr3 31997315 31997354 -127602429 - Lx2 LINE L1 0 6997 6959 6 829 7200 103 27 0 chr3 31997357 31998370 -127601413 - Lx2 LINE L1 -316 6681 5642 6 829 1839 112 0 0 chr3 31998371 31998629 -127601154 + Lx2 LINE L1 5397 5654 -229 6 829 735 272 194 46 chr3 31998629 31998953 -127600830 - MTE2a LTR MaLR -7 372 1 6 829 383 0 21 0 chr3 31998971 31999018 -127600765 + (TG)n Simple_repeat Simple_repeat 2 49 0 6 829 908 192 58 49 chr3 32001547 32001771 -127598012 + MTEa LTR MaLR 154 379 0 1 829 333 295 154 28 chr3 32002843 32002986 -127596797 + RSINE1 SINE B4 5 165 0 2 829 372 338 62 5 chr3 32003467 32003688 -127596095 + MIR SINE MIR 1 224 -38 3 829 447 340 48 14 chr3 32003703 32003912 -127595871 + ID_B1 SINE B4 2 217 -7 4 829 512 300 41 45 chr3 32003936 32004156 -127595627 + B4A SINE B4 2 220 -72 5 829 462 136 0 0 chr3 32004181 32004262 -127595521 + (CA)n Simple_repeat Simple_repeat 2 82 0 6 829 301 196 0 0 chr3 32004264 32004315 -127595468 + HAL1-3A_ME LINE L1 1975 2025 -833 7 829 180 321 130 29 chr3 32004348 32004486 -127595297 - MIR SINE MIR -37 225 74 8 829 965 291 10 21 chr3 32004904 32005192 -127594591 + B4 SINE B4 1 285 -7 9 829 2068 104 112 9 chr3 32005528 32005859 -127593924 - ORR1B2 LTR MaLR -2 365 1 1 829 255 360 0 0 chr3 32006464 32006550 -127593233 + MIRb SINE MIR 4 89 -179 1 829 225 0 0 0 chr3 32007272 32007297 -127592486 + (TC)n Simple_repeat Simple_repeat 2 26 0 1 829 8098 86 1 5 chr3 32007334 32008663 -127591120 - L1_Mus4 LINE L1 -1 6635 5314 1 829 1017 87 13 7 chr3 32008662 32008812 -127590971 - MusHAL1 LINE L1 -1469 1243 1093 1 829 2955 157 12 125 chr3 32008804 32009096 -127590687 - L1_Mm LINE L1 -3788 2095 1804 1 829 1181 75 0 0 chr3 32009096 32009243 -127590540 + B1_Mus1 SINE Alu 2 148 0 1 829 2988 70 6 23 chr3 32009243 32009724 -127590059 - L1_Mm LINE L1 -2110 1804 1410 1 829 4288 162 1 0 chr3 32009712 32010395 -127589388 - L1VL4 LINE L1 -5617 685 2 1 829 609 288 6 0 chr3 32010466 32010626 -127589157 + ID_B1 SINE B4 1 161 -63 1 829 231 114 0 0 chr3 32011644 32011679 -127588104 + (TCTG)n Simple_repeat Simple_repeat 2 36 0 1 829 775 265 61 14 chr3 32012773 32012987 -127586796 - ID_B1 SINE B4 0 224 1 2 829 663 235 192 28 chr3 32014242 32014492 -127585291 - B4A SINE B4 0 292 2 2 829 317 319 61 30 chr3 32014637 32014802 -127584981 - L1MA8 LINE L1 -133 6158 5989 2 829 921 228 74 0 chr3 32015046 32015248 -127584535 + MTE2b LTR MaLR 1 217 -162 2 829 267 79 0 0 chr3 32015949 32015987 -127583796 + (TTGG)n Simple_repeat Simple_repeat 2 39 0 2 829 238 221 0 42 chr3 32016561 32016632 -127583151 + A-rich Low_complexity Low_complexity 3 70 0 2 829 838 224 80 62 chr3 32016748 32017072 -127582711 + RLTR40 LTR ERVK 19 348 -469 2 829 384 160 79 13 chr3 32019638 32019714 -127580069 - ID_B1 SINE B4 -2 222 142 2 829 646 254 86 11 chr3 32020370 32020557 -127579226 - B3 SINE B2 -15 201 1 2 829 265 283 144 24 chr3 32020749 32021060 -127578723 - ORR1C1 LTR MaLR -5 374 1 2 829 252 0 0 0 chr3 32021567 32021595 -127578188 + (TG)n Simple_repeat Simple_repeat 1 28 0 3 829 234 0 0 0 chr3 32021595 32021620 -127578163 + (GA)n Simple_repeat Simple_repeat 1 26 0 3 829 215 258 0 70 chr3 32021620 32021691 -127578092 - PB1D10 SINE Alu -9 108 43 3 829 253 243 53 13 chr3 32021702 32021777 -127578006 + MER82 DNA MER2_type 327 404 -249 3 829 871 301 25 21 chr3 32022210 32022495 -127577288 + B4A SINE B4 1 286 -6 3 829 1202 201 88 0 chr3 32023078 32023361 -127576422 - ORR1C1-int LTR MaLR -1201 308 1 2 829 2015 166 43 16 chr3 32023361 32023729 -127576054 - ORR1C1 LTR MaLR 0 378 1 2 829 329 302 0 101 chr3 32023798 32023927 -127575856 + PB1D10 SINE Alu 1 116 -1 3 829 905 268 19 0 chr3 32025066 32025279 -127574504 + ID_B1 SINE B4 1 217 -7 3 829 510 17 0 0 chr3 32026336 32026395 -127573388 + (TG)n Simple_repeat Simple_repeat 2 60 0 3 829 668 279 86 89 chr3 32026465 32026745 -127573038 - MTEa LTR MaLR 0 379 101 3 829 344 89 51 0 chr3 32027720 32027799 -127571984 + (CAAA)n Simple_repeat Simple_repeat 2 84 0 3 829 953 158 0 6 chr3 32028405 32028583 -127571200 + GA-rich Low_complexity Low_complexity 2 178 0 4 829 330 216 0 0 chr3 32028619 32028693 -127571090 + (TA)n Simple_repeat Simple_repeat 2 75 0 4 829 566 310 106 9 chr3 32029438 32029656 -127570127 - MTE2b LTR MaLR -41 338 100 4 829 224 360 0 30 chr3 32030097 32030266 -127569517 + CT-rich Low_complexity Low_complexity 3 166 0 4 829 504 0 0 0 chr3 32030275 32030331 -127569452 + (TC)n Simple_repeat Simple_repeat 2 57 0 4 829 375 265 1 77 chr3 32030380 32031021 -127568762 + CT-rich Low_complexity Low_complexity 1 592 0 4 829 183 265 20 0 chr3 32031059 32031108 -127568675 + L2a LINE L2 3103 3152 -274 4 829 3716 74 16 14 chr3 32032457 32032953 -127566830 - L1Md_F2 LINE L1 0 6582 6086 4 829 560 274 70 32 chr3 32033699 32033884 -127565899 + ID_B1 SINE B4 2 193 -31 4 829 1005 267 58 15 chr3 32034901 32035175 -127564608 + B4A SINE B4 1 286 -6 4 829 211 285 65 0 chr3 32035622 32035727 -127564056 + MIRm SINE MIR 41 156 -106 5 829 233 257 97 19 chr3 32035988 32036091 -127563692 + L3 LINE CR1 4258 4368 -121 5 829 877 229 2 46 chr3 32036542 32036760 -127563023 - B3A SINE B2 -10 185 2 5 829 2731 224 76 35 chr3 32036841 32037642 -127562141 - RMER13A LTR ERVK -26 834 1 5 829 394 282 78 21 chr3 32037790 32037982 -127561801 - L1MA5 LINE L1 -5 6295 6093 5 829 869 261 83 87 chr3 32038130 32038419 -127561364 + B4 SINE B4 3 290 -2 5 829 29 0 0 0 chr3 32038496 32038525 -127561258 + AT_rich Low_complexity Low_complexity 1 29 0 5 829 3588 13 2 0 chr3 32038545 32038940 -127560843 - MTA_Mm LTR MaLR 0 396 1 5 829 9020 42 6 2 chr3 32038940 32040034 -127559749 - MTA_Mm-int LTR MaLR 0 1098 1 5 829 3545 13 5 0 chr3 32040034 32040428 -127559355 - MTA_Mm LTR MaLR 0 396 1 5 829 373 315 21 23 chr3 32040482 32040660 -127559123 + MIRb SINE MIR 1 180 -88 5 829 1437 248 14 6 chr3 32040663 32041012 -127558771 - MTE2b LTR MaLR -13 366 15 5 829 506 118 18 0 chr3 32041212 32041322 -127558461 + (TAGA)n Simple_repeat Simple_repeat 2 113 0 6 829 595 218 0 0 chr3 32041389 32041499 -127558284 - B3 SINE B2 -86 130 21 6 829 762 72 14 21 chr3 32041499 32041640 -127558143 + (GTTTG)n Simple_repeat Simple_repeat 3 142 0 6 829 645 150 153 30 chr3 32041675 32041806 -127557977 - B1_Mur4 SINE Alu -1 149 3 6 829 472 246 30 7 chr3 32041819 32041954 -127557829 + MER33 DNA MER1_type 163 300 -24 6 829 184 268 110 27 chr3 32042326 32042399 -127557384 - MIRm SINE MIR -114 162 84 6 829 609 258 118 5 chr3 32043003 32043190 -127556593 + B3 SINE B2 1 208 -8 6 829 541 282 12 18 chr3 32043264 32043430 -127556353 + B3A SINE B2 4 168 -30 6 829 1280 164 55 206 chr3 32044625 32045077 -127554706 - ORR1C2 LTR MaLR 0 384 1 6 829 589 271 93 33 chr3 32045077 32045260 -127554523 + Lx8 LINE L1 6808 7001 -472 6 829 339 320 0 0 chr3 32045388 32045488 -127554295 + RMER15 LTR ERVL 371 470 -105 7 829 1932 216 40 2 chr3 32045525 32045929 -127553854 - MTD LTR MaLR 0 419 1 7 829 233 216 0 0 chr3 32047189 32047240 -127552543 - MIRc SINE MIR -110 158 108 7 829 259 360 29 29 chr3 32047443 32047546 -127552237 + L2b LINE L2 3239 3341 -34 7 829 697 239 0 0 chr3 32048213 32048355 -127551428 - B1_Mus1 SINE Alu -6 142 1 7 829 236 344 97 0 chr3 32049843 32049936 -127549847 - MIRc SINE MIR -104 164 63 7 829 590 217 152 6 chr3 32050118 32050276 -127549507 + ID_B1 SINE B4 8 188 -36 7 829 912 123 0 0 chr3 32050285 32050431 -127549352 + (TAGA)n Simple_repeat Simple_repeat 2 147 0 7 829 381 43 0 0 chr3 32050440 32050487 -127549296 + (CAGG)n Simple_repeat Simple_repeat 1 47 0 7 829 660 48 0 0 chr3 32051003 32051087 -127548696 + (TG)n Simple_repeat Simple_repeat 1 84 0 7 829 472 267 204 26 chr3 32051091 32051168 -127548615 - B4 SINE B4 -14 278 205 8 829 420 20 0 0 chr3 32051168 32051217 -127548566 + (TTTA)n Simple_repeat Simple_repeat 4 52 0 8 829 472 267 204 26 chr3 32051217 32051281 -127548502 - B4 SINE B4 -88 204 114 8 829 288 0 0 0 chr3 32051281 32051313 -127548470 + (CA)n Simple_repeat Simple_repeat 2 33 0 8 829 472 267 204 26 chr3 32051313 32051401 -127548382 - B4 SINE B4 -179 113 10 8 829 224 219 203 0 chr3 32052409 32052473 -127547310 - ID_B1 SINE B4 -64 160 84 8 829 199 269 0 0 chr3 32052808 32052860 -127546923 - MIRm SINE MIR -145 131 80 8 829 197 286 52 0 chr3 32052902 32052979 -127546804 + MER5A DNA MER1_type 34 114 -75 8 829 653 207 21 7 chr3 32053447 32053588 -127546195 + B3A SINE B2 46 188 -10 8 829 194 0 0 37 chr3 32053592 32053619 -127546164 + (TAA)n Simple_repeat Simple_repeat 2 27 0 8 829 407 221 42 0 chr3 32053887 32053982 -127545801 + PB1D7 SINE Alu 22 120 0 8 829 21 36 0 0 chr3 32053982 32054010 -127545773 + AT_rich Low_complexity Low_complexity 1 28 0 8 829 1273 223 82 20 chr3 32054266 32054779 -127545004 + Lx5 LINE L1 6495 7039 -11 9 829 956 245 70 4 chr3 32055149 32055407 -127544376 - MTEa LTR MaLR -2 377 103 9 829 435 223 21 0 chr3 32055408 32055502 -127544281 + MTD LTR MaLR 1 96 -323 9 829 203 306 0 0 chr3 32055847 32055909 -127543874 + L2a LINE L2 3343 3404 -22 9 829 877 264 40 58 chr3 32056188 32056465 -127543318 - B4A SINE B4 -5 287 16 9 829 225 253 0 62 chr3 32056395 32056475 -127543308 - ID4_ SINE ID -1 82 8 9 829 405 229 74 0 chr3 32057885 32058007 -127541776 - MTEb LTR MaLR 0 379 249 9 829 207 259 0 0 chr3 32058036 32058094 -127541689 + G-rich Low_complexity Low_complexity 1 58 0 9 829 526 250 129 125 chr3 32058128 32058384 -127541399 - MTEb LTR MaLR -122 257 1 9 829 882 97 6 25 chr3 32059598 32059757 -127540026 + (TTCC)n Simple_repeat Simple_repeat 3 158 0 9 829 426 39 0 0 chr3 32059769 32059821 -127539962 + (TG)n Simple_repeat Simple_repeat 1 52 0 9 829 303 299 122 75 chr3 32059956 32060857 -127538926 - L1M5 LINE L1 -1873 4273 3331 1 829 219 36 0 0 chr3 32060857 32060885 -127538898 + (T)n Simple_repeat Simple_repeat 1 28 0 1 829 41745 12 2 6 chr3 32060899 32067510 -127532273 - L1Md_A LINE L1 0 6582 1 1 829 1713 83 22 0 chr3 32067534 32067763 -127532020 - L1_Mus1 LINE L1 0 6567 6334 1 829 3976 56 0 0 chr3 32067763 32068247 -127531536 + L1_Mus1 LINE L1 5851 6334 -233 1 829 4565 115 9 27 chr3 32068545 32069241 -127530542 - Lx4A LINE L1 0 7058 6376 1 829 1438 82 66 5 chr3 32069241 32069438 -127530345 + Lx4A LINE L1 6169 6377 -681 1 829 405 0 0 0 chr3 32069559 32069604 -127530179 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 829 231 61 0 0 chr3 32069615 32069648 -127530135 + (TTG)n Simple_repeat Simple_repeat 2 34 0 1 829 607 253 57 40 chr3 32070674 32070851 -127528932 + B3A SINE B2 2 181 -17 1 829 2306 169 32 0 chr3 32071039 32071441 -127528342 + MTC LTR MaLR 7 421 0 1 829 4369 92 2 7 chr3 32072013 32072596 -127527187 + MT2B2 LTR ERVL 2 581 -3 1 829 721 245 7 0 chr3 32072682 32072825 -127526958 + B4 SINE B4 149 292 0 1 829 8586 74 11 1 chr3 32073058 32074897 -127524886 - L1_Mus1 LINE L1 0 6567 4712 1 829 1035 211 49 5 chr3 32075083 32075288 -127524495 - B3 SINE B2 -1 215 2 1 829 495 33 0 0 chr3 32075307 32075368 -127524415 + (TATG)n Simple_repeat Simple_repeat 4 64 0 1 829 469 193 71 63 chr3 32075395 32075522 -127524261 - RSINE1 SINE B4 -36 129 2 1 829 304 41 0 58 chr3 32075806 32075858 -127523925 + (TCCC)n Simple_repeat Simple_repeat 2 50 0 1 829 273 260 27 0 chr3 32076161 32076234 -127523549 + L2c LINE L2 3086 3160 -227 1 829 225 0 0 0 chr3 32077227 32077252 -127522531 + (CA)n Simple_repeat Simple_repeat 2 26 0 1 829 465 66 0 0 chr3 32077485 32077546 -127522237 + (TA)n Simple_repeat Simple_repeat 1 61 0 1 829 392 0 0 20 chr3 32077546 32077595 -127522188 + (TG)n Simple_repeat Simple_repeat 2 49 0 1 829 883 276 73 7 chr3 32078220 32078494 -127521289 + B4 SINE B4 1 292 0 1 829 226 356 17 8 chr3 32078504 32078623 -127521160 + (CA)n Simple_repeat Simple_repeat 1 120 0 1 829 216 0 0 0 chr3 32078653 32078677 -127521106 + (CA)n Simple_repeat Simple_repeat 1 24 0 1 829 238 279 29 0 chr3 32078871 32078939 -127520844 + MER5B DNA MER1_type 109 178 0 1 829 390 290 28 21 chr3 32079917 32080058 -127519725 + MIRb SINE MIR 73 214 -54 1 829 410 292 24 1 chr3 32080320 32080458 -127519325 + B1F SINE Alu 9 148 -1 1 829 221 219 138 54 chr3 32081245 32081375 -127518408 + MIRb SINE MIR 67 207 -61 1 829 333 0 0 0 chr3 32081405 32081442 -127518341 + (TG)n Simple_repeat Simple_repeat 1 37 0 1 829 1101 247 134 15 chr3 32081503 32081832 -127517951 - ORR1D2 LTR MaLR -2 368 1 1 829 361 279 9 28 chr3 32081913 32082015 -127517768 + B1F SINE Alu 5 105 -44 1 829 2060 149 142 13 chr3 32082015 32082388 -127517395 + MTC LTR MaLR 1 421 0 1 829 346 316 104 77 chr3 32083412 32083827 -127515956 - L1ME3A LINE L1 -199 6041 5616 1 829 407 200 67 135 chr3 32084124 32084228 -127515555 + PB1 SINE Alu 21 117 0 1 829 313 361 104 50 chr3 32084798 32085373 -127514410 - L1MEg LINE L1 -4561 1523 918 1 829 215 281 18 18 chr3 32086253 32086355 -127513428 + CT-rich Low_complexity Low_complexity 1 102 0 1 829 904 253 96 37 chr3 32086656 32087078 -127512705 + RLTR26 LTR ERVK 4 493 -149 1 829 504 72 0 0 chr3 32087963 32088032 -127511751 + (TATATG)n Simple_repeat Simple_repeat 2 70 0 1 829 616 302 24 0 chr3 32088050 32088219 -127511564 - B3A SINE B2 -25 173 1 1 829 314 313 14 50 chr3 32089939 32090080 -127509703 - MIR SINE MIR 0 262 127 1 829 805 269 104 8 chr3 32090232 32090483 -127509300 + B4 SINE B4 14 288 -4 1 829 1320 267 18 32 chr3 32090816 32091227 -127508556 + MTEa LTR MaLR 1 377 -2 1 829 834 303 71 50 chr3 32092490 32092886 -127506897 + Lx8 LINE L1 6923 7326 -147 1 829 4734 193 62 16 chr3 32092898 32093922 -127505861 + Lx9 LINE L1 6572 7643 -1 1 829 959 261 66 4 chr3 32094087 32094329 -127505454 + B4A SINE B4 8 264 -28 1 829 279 156 0 0 chr3 32095485 32095530 -127504253 + RMER30 DNA MER1_type 38 82 -120 1 829 791 267 172 9 chr3 32096281 32096606 -127503177 - MTEb LTR MaLR 0 379 2 1 829 210 37 0 0 chr3 32097764 32097791 -127501992 + (TTA)n Simple_repeat Simple_repeat 1 27 0 1 829 1987 154 3 34 chr3 32099177 32099534 -127500249 - ORR1A1 LTR MaLR 0 346 1 1 829 38172 53 5 2 chr3 32099702 32105696 -127494087 - L1Md_F3 LINE L1 -12 6572 602 1 829 658 236 7 20 chr3 32106085 32106236 -127493547 + RSINE1 SINE B4 3 151 -14 1 829 315 0 0 0 chr3 32106239 32106274 -127493509 + (CA)n Simple_repeat Simple_repeat 2 36 0 1 829 902 226 11 0 chr3 32107181 32107371 -127492412 - B3 SINE B2 -24 192 1 1 829 594 293 85 5 chr3 32107913 32108071 -127491712 + B3 SINE B2 2 166 -50 1 829 333 68 0 0 chr3 32108071 32108115 -127491668 + (CA)n Simple_repeat Simple_repeat 1 44 0 1 829 594 293 85 5 chr3 32108115 32108155 -127491628 + B3 SINE B2 167 215 -1 1 829 315 228 9 73 chr3 32108417 32108526 -127491257 + G-rich Low_complexity Low_complexity 5 106 0 1 829 464 246 74 51 chr3 32109253 32109429 -127490354 - RMER1A Other Other -1 1029 850 1 829 1163 236 17 60 chr3 32109515 32109817 -127489966 - RMER1B Other Other -149 917 629 1 829 7610 98 28 4 chr3 32109814 32111008 -127488775 + Lx LINE L1 5436 6654 0 1 829 233 202 0 37 chr3 32111179 32111261 -127488522 + CT-rich Low_complexity Low_complexity 4 82 0 1 829 803 259 87 14 chr3 32111595 32111803 -127487980 + ID_B1 SINE B4 1 223 -1 1 829 306 0 0 0 chr3 32112304 32112338 -127487445 + (TG)n Simple_repeat Simple_repeat 2 35 0 1 829 405 81 0 0 chr3 32112338 32112400 -127487383 + (GA)n Simple_repeat Simple_repeat 1 62 0 1 830 1147 244 38 57 chr3 32113852 32113868 -127485915 - RMER17C LTR ERVK 0 410 395 1 830 753 70 0 0 chr3 32113868 32113968 -127485815 + (GGAA)n Simple_repeat Simple_repeat 3 102 0 1 830 1147 244 38 57 chr3 32113968 32114172 -127485611 - RMER17C LTR ERVK -16 394 206 1 830 429 0 49 0 chr3 32114172 32114233 -127485550 + (GA)n Simple_repeat Simple_repeat 1 64 0 1 830 1147 244 38 57 chr3 32114233 32114429 -127485354 - RMER17C LTR ERVK -205 205 1 1 830 756 0 0 0 chr3 32114577 32114661 -127485122 + (CTCTG)n Simple_repeat Simple_repeat 2 85 0 1 830 211 293 133 0 chr3 32114811 32114886 -127484897 + PB1 SINE Alu 13 97 -30 1 830 222 105 0 0 chr3 32114998 32115036 -127484747 + (GAAA)n Simple_repeat Simple_repeat 2 39 0 1 830 255 173 0 0 chr3 32115057 32115109 -127484674 + GA-rich Low_complexity Low_complexity 2 53 0 1 830 201 264 0 94 chr3 32115181 32115277 -127484506 + L2a LINE L2 3340 3426 0 1 830 304 252 38 15 chr3 32115901 32116034 -127483749 + L1_Mur3 LINE L1 125 260 -7468 1 830 9037 151 38 3 chr3 32116026 32117613 -127482170 + L1_Mur3 LINE L1 3722 5363 -517 1 830 14239 74 6 12 chr3 32117613 32120171 -127479612 + L1_Mus1 LINE L1 4023 6567 0 1 830 3470 134 24 20 chr3 32120162 32120779 -127479004 + Lx6 LINE L1 5304 5925 -1535 1 830 409 197 157 33 chr3 32120780 32120901 -127478882 + RMER20B LTR ERVK 1 136 -491 1 830 266 324 77 7 chr3 32121075 32121218 -127478565 + RMER20A LTR ERVK 364 516 0 1 830 3354 240 24 7 chr3 32121218 32121931 -127477852 + Lx6 LINE L1 5921 6645 -815 1 830 1813 256 32 7 chr3 32121929 32122334 -127477449 + Lx6 LINE L1 7044 7458 -2 1 830 244 246 0 30 chr3 32122362 32122429 -127477354 + (CAGAGA)n Simple_repeat Simple_repeat 2 66 0 1 830 921 283 133 0 chr3 32122639 32122961 -127476822 - MTEa LTR MaLR -12 367 3 1 830 3859 129 80 11 chr3 32123160 32123794 -127475989 - RLTR33 LTR ERVK 0 678 1 1 830 378 0 0 0 chr3 32123936 32123978 -127475805 + (TC)n Simple_repeat Simple_repeat 2 43 0 1 830 423 0 0 0 chr3 32123978 32124024 -127475759 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 830 200 256 0 0 chr3 32124536 32124575 -127475208 + (CG)n Simple_repeat Simple_repeat 2 40 0 1 830 679 254 25 40 chr3 32124930 32125131 -127474652 + B3A SINE B2 1 198 0 1 830 456 274 77 30 chr3 32125239 32125408 -127474375 - Lx7 LINE L1 -333 7363 7187 1 830 525 16 0 0 chr3 32126166 32126228 -127473555 + (TG)n Simple_repeat Simple_repeat 1 62 0 1 830 623 284 35 0 chr3 32126229 32126370 -127473413 - B3A SINE B2 -51 147 2 1 830 24 0 0 0 chr3 32126370 32126394 -127473389 + AT_rich Low_complexity Low_complexity 1 24 0 1 830 246 233 0 0 chr3 32126396 32126456 -127473327 + (TG)n Simple_repeat Simple_repeat 1 60 0 1 830 504 279 100 0 chr3 32126460 32126600 -127473183 - RSINE1 SINE B4 0 165 12 1 830 608 191 6 26 chr3 32126799 32126955 -127472828 + RMER17C LTR ERVK 3 155 -255 1 830 547 270 136 19 chr3 32127300 32127557 -127472226 + ERVL-B4-int LTR ERVL 4037 4323 -1344 1 830 1269 311 30 15 chr3 32127941 32128405 -127471378 + ERVL-B4-int LTR ERVL 4831 5301 -413 1 830 238 281 0 0 chr3 32128429 32128486 -127471297 + ID_B1 SINE B4 86 142 -82 1 830 992 268 28 8 chr3 32128551 32128799 -127470984 + B4A SINE B4 2 254 -38 1 830 426 272 57 17 chr3 32128899 32129075 -127470708 + ERVL-B4-int LTR ERVL 5257 5439 -228 1 830 481 279 90 48 chr3 32129442 32129630 -127470153 + B3A SINE B2 9 204 -12 1 830 574 306 66 25 chr3 32129942 32130140 -127469643 - B3A SINE B2 -1 215 10 1 830 243 133 0 0 chr3 32130182 32130227 -127469556 + (TA)n Simple_repeat Simple_repeat 1 45 0 1 830 414 39 0 0 chr3 32130251 32130303 -127469480 + (TAGA)n Simple_repeat Simple_repeat 3 54 0 1 830 857 243 31 21 chr3 32130316 32130509 -127469274 - ID_B1 SINE B4 -24 200 6 1 830 396 103 0 0 chr3 32130543 32130601 -127469182 + (GA)n Simple_repeat Simple_repeat 1 58 0 1 830 1356 52 0 0 chr3 32130605 32130778 -127469005 + (GGGAGA)n Simple_repeat Simple_repeat 3 175 0 1 830 180 0 0 0 chr3 32131254 32131274 -127468509 + (A)n Simple_repeat Simple_repeat 1 20 0 1 830 639 87 0 0 chr3 32131424 32131516 -127468267 - MT2B2 LTR ERVL -242 342 251 2 830 583 230 132 6 chr3 32131529 32131695 -127468088 + Lx8 LINE L1 7050 7236 -237 2 830 351 60 0 0 chr3 32131723 32131773 -127468010 + (TTTTG)n Simple_repeat Simple_repeat 2 51 0 2 830 1125 68 0 14 chr3 32131773 32131911 -127467872 - B1_Mus2 SINE Alu -9 138 1 2 830 388 262 160 24 chr3 32131913 32132038 -127467745 - B1_Mus2 SINE Alu 0 147 6 2 830 703 244 105 13 chr3 32132045 32132273 -127467510 + Lx8 LINE L1 7225 7473 0 2 830 414 0 0 0 chr3 32132420 32132466 -127467317 + (TA)n Simple_repeat Simple_repeat 2 47 0 2 830 315 0 0 0 chr3 32132466 32132500 -127467283 + (TG)n Simple_repeat Simple_repeat 2 36 0 2 830 453 160 329 7 chr3 32132629 32132784 -127466999 + MTD LTR MaLR 215 419 0 2 830 380 328 28 62 chr3 32132878 32133089 -127466694 + MLT1D LTR MaLR 302 505 0 2 830 1155 68 7 0 chr3 32133137 32133283 -127466500 + B1_Mm SINE Alu 1 147 0 2 830 1641 212 39 14 chr3 32133454 32133927 -127465856 + RMER20A LTR ERVK 11 516 0 2 830 593 236 63 6 chr3 32134217 32134392 -127465391 + MLT1D LTR MaLR 258 442 -63 2 830 865 251 103 43 chr3 32134403 32134773 -127465010 + L1MA4 LINE L1 5490 5881 -419 2 830 294 95 0 0 chr3 32135046 32135088 -127464695 + (CA)n Simple_repeat Simple_repeat 1 42 0 2 830 380 102 17 0 chr3 32135297 32135356 -127464427 - ORR1A4 LTR MaLR -269 60 1 2 830 1089 142 51 51 chr3 32135356 32135559 -127464224 - RLTR11A LTR ERVK -325 203 1 2 830 336 24 0 0 chr3 32135599 32135640 -127464143 + (TG)n Simple_repeat Simple_repeat 1 41 0 2 830 1689 205 72 5 chr3 32135640 32136013 -127463770 + MTD LTR MaLR 22 419 0 2 830 183 129 0 0 chr3 32136553 32136584 -127463199 + (GGGA)n Simple_repeat Simple_repeat 2 32 0 2 830 606 28 0 0 chr3 32136602 32136674 -127463109 + (GA)n Simple_repeat Simple_repeat 1 72 0 2 830 540 308 23 0 chr3 32137068 32137198 -127462585 + RSINE1 SINE B4 3 135 -30 2 830 510 67 0 0 chr3 32137213 32137288 -127462495 + (TC)n Simple_repeat Simple_repeat 1 75 0 2 830 297 0 0 0 chr3 32137288 32137321 -127462462 + (TG)n Simple_repeat Simple_repeat 2 34 0 2 830 228 35 0 0 chr3 32137324 32137353 -127462430 + (TC)n Simple_repeat Simple_repeat 2 30 0 2 830 21 57 0 0 chr3 32137817 32137852 -127461931 + AT_rich Low_complexity Low_complexity 1 35 0 2 830 462 282 0 0 chr3 32139356 32139473 -127460310 + PB1D10 SINE Alu 1 117 0 2 830 38820 13 3 7 chr3 32139477 32144847 -127454936 + L1Md_A LINE L1 244 5586 -297 2 830 8780 23 0 0 chr3 32144847 32145843 -127453940 + L1Md_A LINE L1 5587 6582 0 2 830 1628 21 32 0 chr3 32146767 32146953 -127452830 - B2_Mm1a SINE B2 0 193 2 2 830 500 208 28 47 chr3 32147140 32147312 -127452471 + MT2A LTR ERVL 348 546 -38 2 830 293 132 47 24 chr3 32147305 32147390 -127452393 + MT2A LTR ERVL 447 533 0 2 830 419 247 0 0 chr3 32147486 32147579 -127452204 - ID_B1 SINE B4 -27 197 105 2 830 821 269 34 26 chr3 32147703 32147936 -127451847 + B4 SINE B4 50 284 -8 2 830 1840 183 80 30 chr3 32148214 32148613 -127451170 + MTD LTR MaLR 1 419 0 2 830 540 0 0 0 chr3 32148633 32148693 -127451090 + (TAGA)n Simple_repeat Simple_repeat 2 61 0 2 830 522 267 0 0 chr3 32149411 32149531 -127450252 - RSINE1 SINE B4 0 165 46 2 830 284 254 0 0 chr3 32149625 32149688 -127450095 - B4A SINE B4 -21 271 209 2 830 830 197 0 21 chr3 32149711 32149856 -127449927 - B1_Mur3 SINE Alu -6 143 2 2 830 240 240 0 0 chr3 32149915 32149965 -127449818 - B4A SINE B4 -224 68 19 2 830 358 247 4 0 chr3 32150131 32150223 -127449560 + PB1D10 SINE Alu 12 103 -14 2 830 294 98 0 0 chr3 32150239 32150290 -127449493 + (TCTA)n Simple_repeat Simple_repeat 2 52 0 2 830 419 285 67 79 chr3 32150988 32151152 -127448631 + RSINE1 SINE B4 2 163 -2 2 830 2371 159 17 5 chr3 32151488 32151904 -127447879 - MTC LTR MaLR 0 421 1 2 830 394 159 22 33 chr3 32152559 32152741 -127447042 + (CAGAGA)n Simple_repeat Simple_repeat 1 180 0 2 830 202 83 40 40 chr3 32152752 32152802 -127446981 + (CAGA)n Simple_repeat Simple_repeat 3 52 0 2 830 738 276 100 54 chr3 32153133 32153412 -127446371 + B4A SINE B4 1 292 0 2 830 262 350 29 10 chr3 32153450 32153554 -127446229 + L2a LINE L2 3305 3410 -16 2 830 239 286 22 11 chr3 32153612 32153704 -127446079 + A-rich Low_complexity Low_complexity 3 95 0 2 830 767 280 132 0 chr3 32154179 32154436 -127445347 + B4 SINE B4 2 292 0 2 830 501 174 114 0 chr3 32154451 32154570 -127445213 + MTD LTR MaLR 16 151 -268 2 830 653 147 213 0 chr3 32154594 32154730 -127445053 + MTD LTR MaLR 248 412 -7 2 830 322 272 0 58 chr3 32154853 32154939 -127444844 + ID4 SINE ID 1 81 -2 2 830 1366 219 136 66 chr3 32155973 32156516 -127443267 + RMER4B LTR ERVK 1 581 -4 2 830 360 303 19 37 chr3 32157918 32158047 -127441736 + MER3 DNA MER1_type 47 175 -34 2 830 2766 146 15 25 chr3 32158047 32158518 -127441265 - RMER4A LTR ERVK 0 466 1 2 830 360 303 19 37 chr3 32158518 32158549 -127441234 + MER3 DNA MER1_type 176 204 -5 2 830 1032 244 29 73 chr3 32158735 32159091 -127440692 - ORR1E LTR MaLR -7 372 7 2 830 497 209 9 0 chr3 32159102 32159212 -127440571 - ORR1E-int LTR MaLR -6 1364 1254 2 830 1608 256 35 65 chr3 32160082 32160604 -127439179 - ORR1E-int LTR MaLR -112 1258 753 2 830 838 193 93 5 chr3 32160609 32160802 -127438981 + MTD LTR MaLR 1 210 -209 2 830 1773 133 108 9 chr3 32160891 32161233 -127438550 - RLTR14 LTR ERV1 0 382 7 2 830 656 263 83 66 chr3 32161261 32161489 -127438294 - ORR1E LTR MaLR -127 232 1 2 830 352 235 24 0 chr3 32161489 32161564 -127438219 + MTD LTR MaLR 21 97 -282 2 830 8371 27 12 10 chr3 32161916 32162924 -127436859 - L1Md_F3 LINE L1 -14 6570 5587 2 830 450 258 16 8 chr3 32162925 32163054 -127436729 + MTD LTR MaLR 228 357 -62 2 830 825 222 44 25 chr3 32163376 32163579 -127436204 + B3 SINE B2 10 216 0 2 830 348 309 0 0 chr3 32163629 32163723 -127436060 + MTD LTR MaLR 1 94 -285 2 830 303 261 132 54 chr3 32163723 32163795 -127435988 + MT2A LTR ERVL 1 179 -354 2 830 1356 76 0 2 chr3 32163814 32164258 -127435525 + (TG)n Simple_repeat Simple_repeat 1 443 0 2 830 456 19 0 0 chr3 32164435 32164488 -127435295 + (TA)n Simple_repeat Simple_repeat 1 53 0 2 830 22 0 0 0 chr3 32165472 32165494 -127434289 + AT_rich Low_complexity Low_complexity 1 22 0 2 830 1491 285 38 101 chr3 32165557 32166130 -127433653 + RMER1C Other Other 397 933 -409 2 830 764 264 24 42 chr3 32166142 32166474 -127433309 - RLTR15 LTR ERVK -33 326 1 2 830 1753 169 10 16 chr3 32166474 32166787 -127432996 + RMER1C Other Other 915 1225 -117 2 830 554 159 0 31 chr3 32166787 32166917 -127432866 + CT-rich Low_complexity Low_complexity 2 127 0 2 830 935 194 47 0 chr3 32166994 32167164 -127432619 + MTD LTR MaLR 91 268 -151 2 830 192 77 0 0 chr3 32167302 32167328 -127432455 + (A)n Simple_repeat Simple_repeat 1 26 0 2 830 1577 228 27 25 chr3 32167396 32167764 -127432019 + ORR1D2 LTR MaLR 1 369 -1 2 830 2020 210 86 49 chr3 32168490 32168980 -127430803 - RLTR18B LTR ERVK -3 509 2 2 830 1815 174 68 8 chr3 32169816 32170169 -127429614 + ORR1D1 LTR MaLR 1 374 0 2 830 411 21 0 0 chr3 32170788 32170836 -127428947 + (CA)n Simple_repeat Simple_repeat 2 49 0 2 830 1160 91 34 0 chr3 32171091 32171267 -127428516 - L1_Mur2 LINE L1 -427 5450 5269 2 830 739 184 68 0 chr3 32171416 32171564 -127428219 - Lx3B LINE L1 -451 5840 5654 2 830 677 286 179 34 chr3 32171562 32171965 -127427818 + Lx8 LINE L1 6989 7451 -22 2 830 1303 197 114 6 chr3 32171965 32172297 -127427486 - ORR1D1 LTR MaLR -4 370 3 2 830 264 241 140 33 chr3 32172297 32172312 -127427471 + Lx8 LINE L1 7452 7466 -7 2 830 22 35 0 0 chr3 32172315 32172344 -127427439 + AT_rich Low_complexity Low_complexity 1 29 0 2 830 726 258 5 51 chr3 32172358 32172554 -127427229 + B3A SINE B2 1 187 -11 2 830 864 199 50 30 chr3 32172734 32172936 -127426847 + B3 SINE B2 11 216 0 2 830 1236 48 0 0 chr3 32174477 32174623 -127425160 + B1_Mm SINE Alu 2 147 0 2 830 517 36 43 43 chr3 32174664 32174780 -127425003 + (TAGA)n Simple_repeat Simple_repeat 2 117 0 2 830 232 164 33 0 chr3 32174947 32175008 -127424775 + Lx6 LINE L1 7372 7434 -26 2 830 21 0 0 0 chr3 32175068 32175089 -127424694 + AT_rich Low_complexity Low_complexity 1 21 0 2 830 21 0 0 0 chr3 32175151 32175172 -127424611 + AT_rich Low_complexity Low_complexity 1 21 0 2 830 1670 36 0 0 chr3 32175210 32175402 -127424381 + B2_Mm1a SINE B2 1 192 -1 2 830 362 316 126 43 chr3 32175596 32175874 -127423909 + ORR1E LTR MaLR 1 301 -58 2 830 403 337 49 12 chr3 32175874 32176120 -127423663 - L1MA6 LINE L1 -188 6112 5858 2 830 252 205 51 13 chr3 32176226 32176305 -127423478 + (TCTG)n Simple_repeat Simple_repeat 1 82 0 2 830 417 330 0 0 chr3 32176319 32176431 -127423352 - B4A SINE B4 -164 128 17 2 830 786 50 0 0 chr3 32176788 32176887 -127422896 + (TC)n Simple_repeat Simple_repeat 2 100 0 2 830 492 18 0 0 chr3 32176890 32176947 -127422836 + (TG)n Simple_repeat Simple_repeat 1 57 0 2 830 21 0 0 0 chr3 32177091 32177112 -127422671 + AT_rich Low_complexity Low_complexity 1 21 0 2 830 517 280 8 8 chr3 32177306 32177439 -127422344 + ID_B1 SINE B4 80 212 -12 2 830 1515 247 75 5 chr3 32177789 32178176 -127421607 - MTD LTR MaLR 0 419 6 2 830 281 304 12 6 chr3 32179126 32179302 -127420481 + (TG)n Simple_repeat Simple_repeat 1 177 0 2 830 347 318 0 0 chr3 32179337 32179422 -127420361 - RSINE1 SINE B4 -77 88 4 2 830 823 279 92 27 chr3 32180265 32180600 -127419183 + ORR1E LTR MaLR 1 357 -2 2 830 605 203 106 53 chr3 32180768 32180919 -127418864 - RSINE1 SINE B4 -4 161 3 2 830 459 0 0 0 chr3 32181038 32181089 -127418694 + (TAA)n Simple_repeat Simple_repeat 1 51 0 2 830 305 234 146 39 chr3 32183084 32183262 -127416521 - MIR SINE MIR 0 262 66 2 830 975 214 79 54 chr3 32184401 32184678 -127415105 + B4 SINE B4 9 292 0 3 830 405 0 0 0 chr3 32185066 32185111 -127414672 + (TG)n Simple_repeat Simple_repeat 2 46 0 3 830 1532 232 54 20 chr3 32186017 32186422 -127413361 + MTD LTR MaLR 1 419 0 3 830 265 314 138 76 chr3 32186693 32186903 -127412880 - MLT2B1 LTR ERVL 0 567 345 3 830 341 256 90 0 chr3 32186957 32187090 -127412693 - MLT2B1 LTR ERVL -345 175 31 3 830 469 259 9 18 chr3 32187158 32187268 -127412515 + ID_B1 SINE B4 87 195 -29 3 830 275 211 52 72 chr3 32187501 32187598 -127412185 + L1MC5 LINE L1 7291 7385 -576 3 830 317 267 11 0 chr3 32187632 32187722 -127412061 + ID_B1 SINE B4 134 224 0 3 830 506 248 7 52 chr3 32187935 32188088 -127411695 - B4A SINE B4 0 292 147 3 830 467 298 116 18 chr3 32188377 32188541 -127411242 + B3A SINE B2 3 182 -16 3 830 258 105 0 0 chr3 32188541 32188579 -127411204 + (CA)n Simple_repeat Simple_repeat 1 38 0 3 830 238 333 14 0 chr3 32188609 32188681 -127411102 + ID4 SINE ID 1 73 -10 3 830 581 239 41 21 chr3 32188721 32188866 -127410917 + RSINE1 SINE B4 2 149 -16 3 830 185 65 0 31 chr3 32188877 32188909 -127410874 + (CA)n Simple_repeat Simple_repeat 2 32 0 3 830 447 68 0 0 chr3 32189955 32190014 -127409769 + (TC)n Simple_repeat Simple_repeat 1 59 0 3 830 522 305 0 85 chr3 32190352 32190383 -127409400 - RSINE1 SINE B4 0 165 144 3 830 225 0 0 0 chr3 32190383 32190408 -127409375 + (TG)n Simple_repeat Simple_repeat 2 26 0 3 830 522 305 0 85 chr3 32190408 32190541 -127409242 - RSINE1 SINE B4 -22 143 15 3 830 233 225 14 0 chr3 32190556 32190627 -127409156 + T-rich Low_complexity Low_complexity 4 75 0 3 830 758 257 101 5 chr3 32191013 32191220 -127408563 + B4A SINE B4 59 285 -7 3 830 297 0 0 0 chr3 32191235 32191268 -127408515 + (CA)n Simple_repeat Simple_repeat 1 33 0 3 830 402 189 66 18 chr3 32192407 32192574 -127407209 + (TAGA)n Simple_repeat Simple_repeat 4 178 0 3 830 593 153 45 0 chr3 32192616 32192773 -127407010 + (TAGA)n Simple_repeat Simple_repeat 2 165 0 3 830 430 213 82 18 chr3 32192975 32193085 -127406698 - PB1D7 SINE Alu -1 119 3 3 830 411 225 55 18 chr3 32193700 32193863 -127405920 + (TAGA)n Simple_repeat Simple_repeat 1 169 0 3 830 1337 219 91 30 chr3 32194073 32194403 -127405380 - MTEa LTR MaLR -1 378 29 3 830 316 238 142 50 chr3 32194773 32194916 -127404867 - MIRc SINE MIR -37 171 17 3 830 244 246 0 0 chr3 32194964 32195025 -127404758 - MLT1C LTR MaLR -6 499 439 3 830 1316 90 40 0 chr3 32195025 32195202 -127404581 + B2_Mm2 SINE B2 1 184 -11 3 830 609 14 0 0 chr3 32195202 32195272 -127404511 + (CA)n Simple_repeat Simple_repeat 2 71 0 3 830 1245 41 0 0 chr3 32195273 32195420 -127404363 + B1_Mm SINE Alu 1 147 0 3 830 257 109 18 0 chr3 32195420 32195475 -127404308 + (CAAAAA)n Simple_repeat Simple_repeat 6 61 0 3 830 751 303 59 59 chr3 32195483 32195820 -127403963 - MLT1C LTR MaLR -74 393 57 3 830 1127 150 53 5 chr3 32195920 32196128 -127403655 + URR1B DNA MER1_type 5 222 -3 3 830 414 0 0 0 chr3 32197593 32197639 -127402144 + (TC)n Simple_repeat Simple_repeat 1 46 0 3 830 351 0 0 0 chr3 32197639 32197677 -127402106 + (CA)n Simple_repeat Simple_repeat 1 39 0 3 830 583 237 71 19 chr3 32198538 32198693 -127401090 + RSINE1 SINE B4 3 165 0 3 830 319 158 35 0 chr3 32198913 32198970 -127400813 + ORR1D2 LTR MaLR 1 59 -311 3 830 1344 220 51 43 chr3 32198970 32199341 -127400442 - ORR1D1 LTR MaLR 0 374 1 3 830 1086 252 105 26 chr3 32199341 32199631 -127400152 + ORR1D2 LTR MaLR 57 370 0 3 830 2034 156 176 15 chr3 32199705 32200102 -127399681 + RMER6B LTR ERVK 1 461 0 3 830 295 294 136 29 chr3 32200467 32200709 -127399074 + LTR48 LTR ERV1 475 742 -45 3 830 297 281 20 30 chr3 32200741 32200861 -127398922 + RSINE1 SINE B4 3 124 -168 3 830 2809 101 8 120 chr3 32200980 32201464 -127398319 + RLTR23 LTR ERV1 1 430 0 3 830 279 305 24 12 chr3 32201464 32201547 -127398236 + RSINE1 SINE B4 82 165 0 3 830 237 65 0 0 chr3 32201814 32201845 -127397938 + (CATA)n Simple_repeat Simple_repeat 4 34 0 3 830 297 0 0 0 chr3 32201845 32201877 -127397906 + (GA)n Simple_repeat Simple_repeat 2 34 0 3 830 399 299 59 39 chr3 32202167 32202320 -127397463 + RMER15 LTR ERVL 1 156 -419 3 830 962 300 11 8 chr3 32202317 32202582 -127397201 - B4 SINE B4 -25 267 2 3 830 975 248 0 40 chr3 32202735 32202958 -127396825 + B3 SINE B2 1 214 -2 3 830 324 0 0 0 chr3 32202973 32203009 -127396774 + (TG)n Simple_repeat Simple_repeat 2 37 0 3 830 251 260 0 49 chr3 32203630 32203711 -127396072 + B4 SINE B4 2 78 -214 3 830 1153 221 67 112 chr3 32204258 32204660 -127395123 + ORR1C2 LTR MaLR 1 384 0 3 830 518 346 58 28 chr3 32204660 32205097 -127394686 - MuRRS4-int LTR ERV1 -1130 3933 3164 3 830 305 381 5 16 chr3 32205556 32205748 -127394035 - MuRRS4-int LTR ERV1 -2635 2682 2493 3 830 278 300 22 30 chr3 32206038 32206172 -127393611 - MURVY-int LTR ERV1 -3689 3763 3631 3 830 40821 25 1 6 chr3 32207002 32213183 -127386600 - L1Md_T LINE L1 0 6582 441 3 830 582 198 71 82 chr3 32213332 32213427 -127386356 + B2_Mm2 SINE B2 1 95 -100 3 830 3041 47 0 16 chr3 32213427 32213814 -127385969 + L1Md_F3 LINE L1 6194 6574 -10 3 830 582 198 71 82 chr3 32213814 32213900 -127385883 + B2_Mm2 SINE B2 96 180 -15 3 830 235 186 0 0 chr3 32213927 32213970 -127385813 + RMER1A Other Other 249 291 -739 3 830 1061 229 141 7 chr3 32213961 32214412 -127385371 - Lx8 LINE L1 -729 6967 6456 3 830 1181 156 75 0 chr3 32215572 32215771 -127384012 + B3 SINE B2 3 216 0 3 830 662 254 46 15 chr3 32215802 32215998 -127383785 + B3 SINE B2 15 216 0 3 830 328 326 8 15 chr3 32216281 32216415 -127383368 + CT-rich Low_complexity Low_complexity 3 135 0 3 830 180 0 0 0 chr3 32216619 32216639 -127383144 + (T)n Simple_repeat Simple_repeat 1 20 0 3 830 735 280 67 39 chr3 32217826 32218108 -127381675 + B4A SINE B4 1 290 -2 3 830 287 143 20 0 chr3 32218473 32218522 -127381261 + B4 SINE B4 35 84 -208 3 830 690 153 103 37 chr3 32218550 32218686 -127381097 + B1_Mur3 SINE Alu 5 149 0 3 830 665 137 8 0 chr3 32218713 32218830 -127380953 + (GGAA)n Simple_repeat Simple_repeat 4 121 0 3 830 301 264 33 11 chr3 32219191 32219283 -127380500 + PB1D10 SINE Alu 9 102 -15 3 830 444 302 0 0 chr3 32219331 32219447 -127380336 + PB1D10 SINE Alu 2 117 0 3 830 595 203 26 20 chr3 32219677 32219828 -127379955 - RMER15 LTR ERVL -128 447 296 3 830 733 278 35 22 chr3 32220292 32220524 -127379259 - RMER15 LTR ERVL -3 572 338 3 830 3184 150 29 34 chr3 32220856 32220945 -127378838 - RLTR20A2 LTR ERVK 0 578 491 3 830 396 0 0 0 chr3 32220945 32220989 -127378794 + (CA)n Simple_repeat Simple_repeat 2 45 0 3 830 3184 150 29 34 chr3 32220989 32221480 -127378303 - RLTR20A2 LTR ERVK -88 490 2 3 830 6513 148 52 14 chr3 32221482 32222258 -127377525 - MYSERV16_I-int LTR ERVK -2 2840 1498 3 830 396 0 0 0 chr3 32222258 32222302 -127377481 + (TAGA)n Simple_repeat Simple_repeat 4 47 0 3 830 6513 178 45 35 chr3 32222302 32223776 -127376007 - MYSERV16_I-int LTR ERVK -741 2101 1 3 830 2902 38 3 14 chr3 32223793 32224141 -127375642 - ORR1A0 LTR MaLR -2 344 1 3 830 284 131 15 90 chr3 32224703 32224770 -127375013 + BGLII LTR ERVK 1 62 -359 3 830 822 250 16 0 chr3 32224761 32224945 -127374838 + B3 SINE B2 10 196 -20 3 830 270 0 0 0 chr3 32224958 32224988 -127374795 + (CAGA)n Simple_repeat Simple_repeat 4 33 0 3 830 452 207 0 0 chr3 32225022 32225104 -127374679 - ID4_ SINE ID 0 83 2 3 830 1008 96 145 0 chr3 32225223 32225389 -127374394 + B2_Mm1t SINE B2 1 190 -3 3 830 21 0 0 0 chr3 32225397 32225418 -127374365 + AT_rich Low_complexity Low_complexity 1 21 0 3 830 242 278 14 0 chr3 32225676 32225748 -127374035 + 4.5SRNA scRNA scRNA 6 78 -16 3 830 803 187 22 0 chr3 32225750 32225889 -127373894 + B1_Mur1 SINE Alu 1 142 -7 3 830 330 26 0 0 chr3 32226662 32226701 -127373082 + (CA)n Simple_repeat Simple_repeat 2 40 0 3 830 290 315 0 0 chr3 32226873 32226962 -127372821 + B1F1 SINE Alu 1 89 -60 3 830 1965 90 67 0 chr3 32226967 32227266 -127372517 - ORR1A2 LTR MaLR -8 319 1 3 830 1300 112 32 5 chr3 32227507 32227685 -127372098 + B2_Mm2 SINE B2 2 185 -10 3 830 801 58 0 0 chr3 32227685 32227788 -127371995 + (GGA)n Simple_repeat Simple_repeat 3 105 0 3 830 221 100 50 0 chr3 32227798 32227838 -127371945 + (GAAAA)n Simple_repeat Simple_repeat 3 44 0 3 830 2370 132 36 26 chr3 32227873 32228263 -127371520 - ORR1B1 LTR MaLR 0 394 1 3 830 233 291 139 44 chr3 32228355 32228513 -127371270 + MER5B DNA MER1_type 1 173 -5 3 830 288 279 23 11 chr3 32228515 32228602 -127371181 - MER5A1 DNA MER1_type -5 161 74 3 830 302 225 454 0 chr3 32228673 32228781 -127371002 + B3 SINE B2 4 160 -38 3 830 462 49 0 0 chr3 32228787 32228848 -127370935 + (CA)n Simple_repeat Simple_repeat 2 62 0 3 830 753 246 71 15 chr3 32228885 32229083 -127370700 + ID_B1 SINE B4 12 220 -4 3 830 4441 134 6 98 chr3 32229324 32230136 -127369647 + RMER19A LTR ERVK 1 737 0 3 830 4682 120 144 11 chr3 32230281 32231126 -127368657 - RMER17B LTR ERVK 0 958 1 3 830 744 298 132 24 chr3 32231140 32231550 -127368233 + L1MB3 LINE L1 5684 6137 -46 3 830 216 0 0 0 chr3 32232135 32232159 -127367624 + (T)n Simple_repeat Simple_repeat 1 24 0 3 830 628 216 64 53 chr3 32234802 32234973 -127364810 + ID_B1 SINE B4 52 224 0 3 830 1180 68 0 0 chr3 32237476 32237622 -127362161 + B1_Mus1 SINE Alu 3 148 0 3 830 232 135 19 19 chr3 32237622 32237675 -127362108 + (CAAA)n Simple_repeat Simple_repeat 2 54 0 3 830 807 175 0 0 chr3 32239319 32239473 -127360310 + GA-rich Low_complexity Low_complexity 2 155 0 3 830 676 260 53 10 chr3 32240665 32240871 -127358912 + B4A SINE B4 66 280 -12 3 830 237 65 0 0 chr3 32240871 32240902 -127358881 + (CA)n Simple_repeat Simple_repeat 2 32 0 3 830 382 296 17 25 chr3 32241163 32241281 -127358502 + B1F SINE Alu 1 117 -32 4 830 632 275 103 5 chr3 32241771 32241965 -127357818 - B4A SINE B4 -38 254 42 4 831 268 279 63 63 chr3 32243721 32243832 -127355951 + MER96B DNA hAT 1 111 -306 4 831 711 253 77 10 chr3 32243835 32244031 -127355752 - B3 SINE B2 -6 210 2 4 831 432 97 0 0 chr3 32244040 32244102 -127355681 + (TTG)n Simple_repeat Simple_repeat 2 63 0 4 831 959 281 90 11 chr3 32244654 32245010 -127354773 - MTD LTR MaLR -18 401 18 4 831 617 279 29 0 chr3 32245579 32245719 -127354064 + B3A SINE B2 1 144 -54 4 831 659 231 7 33 chr3 32246170 32246322 -127353461 + B1_Mur1 SINE Alu 1 148 -1 4 831 365 258 90 0 chr3 32246326 32246415 -127353368 + PB1 SINE Alu 6 102 -25 4 831 431 239 218 52 chr3 32246947 32247314 -127352469 + L1MC4 LINE L1 7172 7599 -443 4 831 304 286 19 9 chr3 32247513 32247619 -127352164 - ID_B1 SINE B4 -5 219 113 4 831 1153 92 38 0 chr3 32247779 32247963 -127351820 + B2_Mm1t SINE B2 2 192 -1 4 831 687 206 7 33 chr3 32248325 32248476 -127351307 + B1_Mus2 SINE Alu 1 147 0 4 831 659 191 6 81 chr3 32248766 32248910 -127350873 + B1_Mur3 SINE Alu 2 136 -13 4 831 198 0 0 0 chr3 32248910 32248932 -127350851 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 4 831 659 191 6 81 chr3 32248932 32248947 -127350836 + B1_Mur3 SINE Alu 137 149 0 4 831 744 328 82 7 chr3 32248990 32249393 -127350390 + Tigger7 DNA MER2_type 170 602 -1889 4 831 27 0 0 0 chr3 32249654 32249681 -127350102 + AT_rich Low_complexity Low_complexity 1 27 0 4 831 183 80 0 0 chr3 32249873 32249898 -127349885 + (A)n Simple_repeat Simple_repeat 1 25 0 4 831 1145 211 145 82 chr3 32250071 32250463 -127349320 - MTD LTR MaLR 0 419 3 4 831 2370 70 0 0 chr3 32250765 32251063 -127348720 + L1_Mus1 LINE L1 6270 6567 0 4 831 713 223 175 42 chr3 32251862 32252148 -127347635 + Lx8 LINE L1 7149 7472 -1 4 831 876 176 0 7 chr3 32252173 32252322 -127347461 + B1_Mur2 SINE Alu 1 148 -1 4 831 288 252 37 37 chr3 32252340 32252476 -127347307 + Lx8 LINE L1 7335 7470 -3 4 831 288 264 33 11 chr3 32252969 32253061 -127346722 + PB1D10 SINE Alu 17 110 -7 4 831 327 213 66 0 chr3 32253075 32253136 -127346647 + ID4_ SINE ID 3 67 -16 4 831 294 258 32 11 chr3 32253312 32253406 -127346377 + MTC LTR MaLR 1 96 -325 4 831 1108 118 10 65 chr3 32253406 32253605 -127346178 + B2_Mm1t SINE B2 2 189 -4 4 831 291 304 57 38 chr3 32253853 32253959 -127345824 - B4A SINE B4 -1 291 184 4 831 420 92 0 0 chr3 32253941 32254006 -127345777 + RLTR15 LTR ERVK 294 358 -1 4 831 314 295 0 0 chr3 32254475 32254553 -127345230 + RSINE1 SINE B4 4 81 -84 4 831 349 290 40 68 chr3 32255387 32255535 -127344248 - ID_B1 SINE B4 -1 223 80 4 831 262 294 0 0 chr3 32255666 32255734 -127344049 + B4A SINE B4 5 72 -220 4 831 326 242 0 0 chr3 32255758 32255824 -127343959 - B1F2 SINE Alu -8 141 76 4 831 621 279 54 12 chr3 32255821 32255906 -127343877 + B4A SINE B4 118 200 -92 4 831 3023 116 35 8 chr3 32255906 32256392 -127343391 + Lx LINE L1 6156 6654 0 4 831 621 279 54 12 chr3 32256392 32256473 -127343310 + B4A SINE B4 201 290 -2 4 831 635 147 0 0 chr3 32257346 32257455 -127342328 + B1_Mur3 SINE Alu 41 149 0 4 831 24 32 0 0 chr3 32257462 32257493 -127342290 + AT_rich Low_complexity Low_complexity 1 31 0 4 831 1043 140 33 36 chr3 32258443 32258672 -127341111 - ORR1A3-int LTR MaLR -1 1962 1754 4 831 1474 139 71 68 chr3 32258671 32258994 -127340789 + ORR1A4 LTR MaLR 6 329 0 4 831 261 262 0 130 chr3 32258994 32259086 -127340697 + B3A SINE B2 118 197 -1 4 831 220 290 65 0 chr3 32259591 32259729 -127340054 + (CCAA)n Simple_repeat Simple_repeat 3 149 0 4 831 486 33 0 0 chr3 32260654 32260714 -127339069 + (TG)n Simple_repeat Simple_repeat 1 60 0 4 831 207 0 0 0 chr3 32260817 32260840 -127338943 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 4 831 1162 75 0 0 chr3 32260859 32261006 -127338777 - B1_Mus1 SINE Alu 0 148 2 4 831 279 54 0 0 chr3 32261009 32261046 -127338737 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 4 831 309 224 30 0 chr3 32261050 32261117 -127338666 - ID_B1 SINE B4 -13 211 143 4 831 270 266 135 112 chr3 32261484 32261662 -127338121 + Charlie8 DNA MER1_type 18 199 -2229 4 831 1364 204 76 82 chr3 32261899 32262267 -127337516 + MTE2b LTR MaLR 13 378 -1 4 831 893 182 0 0 chr3 32262462 32262610 -127337173 + B1_Mus1 SINE Alu 1 148 0 4 831 183 42 0 0 chr3 32262615 32262639 -127337144 + (CAA)n Simple_repeat Simple_repeat 2 25 0 4 831 183 114 0 0 chr3 32263593 32263628 -127336155 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 4 831 189 0 0 0 chr3 32264600 32264621 -127335162 + (CGG)n Simple_repeat Simple_repeat 2 22 0 4 831 261 0 0 0 chr3 32264621 32264650 -127335133 + (GGA)n Simple_repeat Simple_repeat 1 29 0 4 831 656 208 188 4 chr3 32265542 32265773 -127334010 - MTE2b LTR MaLR -28 351 69 4 831 180 0 0 0 chr3 32266319 32266339 -127333444 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 4 831 275 249 109 86 chr3 32266677 32266950 -127332833 + B4 SINE B4 1 274 -18 4 831 819 86 0 0 chr3 32267212 32267328 -127332455 + B1_Mus1 SINE Alu 27 142 -6 4 831 246 156 0 0 chr3 32267328 32267373 -127332410 + GA-rich Low_complexity Low_complexity 1 45 0 4 831 825 234 11 0 chr3 32268144 32268328 -127331455 + B3 SINE B2 6 191 -25 4 831 1171 37 0 0 chr3 32268331 32268466 -127331317 + B1_Mus2 SINE Alu 1 135 -12 4 831 271 44 44 0 chr3 32268469 32268514 -127331269 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 4 831 369 191 0 0 chr3 32268541 32268609 -127331174 + ID_B1 SINE B4 149 216 -8 4 831 21 36 0 0 chr3 32268621 32268649 -127331134 + AT_rich Low_complexity Low_complexity 1 28 0 4 831 237 196 0 0 chr3 32269140 32269191 -127330592 + GA-rich Low_complexity Low_complexity 1 51 0 4 831 647 234 0 0 chr3 32269343 32269471 -127330312 + B1_Mur2 SINE Alu 10 137 -12 4 831 629 58 12 0 chr3 32269471 32269557 -127330226 + (GA)n Simple_repeat Simple_repeat 2 88 0 4 831 976 287 0 59 chr3 32269582 32269689 -127330094 + B4 SINE B4 2 100 -192 4 831 2818 100 50 2 chr3 32269689 32270111 -127329672 + BGLII_A LTR ERVK 3 444 -1 4 831 976 287 0 59 chr3 32270111 32270310 -127329473 + B4 SINE B4 101 290 -2 4 831 699 238 98 26 chr3 32270321 32270515 -127329268 + B3 SINE B2 2 209 -7 4 831 286 220 95 48 chr3 32271194 32271299 -127328484 + MLT1A1 LTR MaLR 299 408 0 4 831 444 118 0 0 chr3 32271419 32271487 -127328296 + (CA)n Simple_repeat Simple_repeat 2 69 0 4 831 481 205 43 0 chr3 32271594 32271711 -127328072 + ID_B1 SINE B4 102 223 -1 4 831 570 258 38 0 chr3 32271818 32271950 -127327833 + B1_Mur1 SINE Alu 5 141 -8 4 831 279 0 0 0 chr3 32272125 32272156 -127327627 + (TG)n Simple_repeat Simple_repeat 2 32 0 4 831 364 246 246 0 chr3 32272832 32272942 -127326841 - B1_Mur1 SINE Alu -8 141 5 4 831 268 306 40 24 chr3 32273018 32273142 -127326641 - HERV16-int LTR ERVL -4138 858 733 4 831 384 293 91 32 chr3 32273234 32273421 -127326362 - HERV16-int LTR ERVL -4422 574 377 4 831 273 274 162 0 chr3 32273651 32273768 -127326015 - MTE2b LTR MaLR -11 368 233 4 831 2271 166 57 8 chr3 32273870 32274271 -127325512 + MTC LTR MaLR 1 421 0 4 831 422 252 0 142 chr3 32274285 32274319 -127325464 + B1_Mur2 SINE Alu 35 60 -89 4 831 3425 45 28 14 chr3 32274319 32274745 -127325038 + RLTR10C LTR ERVK 5 436 0 4 831 422 252 0 142 chr3 32274745 32274822 -127324961 + B1_Mur2 SINE Alu 61 131 -18 4 831 2204 131 98 3 chr3 32274822 32275181 -127324602 - ORR1B1 LTR MaLR -1 393 1 4 831 422 252 0 142 chr3 32275181 32275202 -127324581 + B1_Mur2 SINE Alu 132 149 0 4 831 395 265 16 49 chr3 32275219 32275342 -127324441 - MTE2b LTR MaLR -260 119 1 4 831 492 18 0 0 chr3 32275520 32275577 -127324206 + (TC)n Simple_repeat Simple_repeat 2 58 0 4 831 297 0 0 0 chr3 32275577 32275609 -127324174 + (TG)n Simple_repeat Simple_repeat 2 34 0 4 831 516 215 23 55 chr3 32275628 32275756 -127324027 - RSINE1 SINE B4 -38 127 4 4 831 771 106 195 0 chr3 32276231 32276354 -127323429 + B1_Mus1 SINE Alu 1 147 -1 4 831 202 0 29 57 chr3 32276360 32276395 -127323388 + (CAAA)n Simple_repeat Simple_repeat 1 34 0 4 831 2194 92 6 0 chr3 32276819 32277133 -127322650 + ORR1A2 LTR MaLR 4 319 -8 4 831 23 0 0 0 chr3 32277409 32277432 -127322351 + AT_rich Low_complexity Low_complexity 1 23 0 4 831 750 230 117 0 chr3 32277526 32277722 -127322061 - ID_B1 SINE B4 0 224 6 4 831 203 196 59 0 chr3 32278076 32278127 -127321656 + (TAGA)n Simple_repeat Simple_repeat 1 54 0 4 831 489 275 22 37 chr3 32278143 32278279 -127321504 - B1F2 SINE Alu -6 143 10 4 831 545 273 12 37 chr3 32278279 32278307 -127321476 - ID_B1 SINE B4 -69 221 72 4 831 313 190 243 29 chr3 32278746 32278849 -127320934 - B3 SINE B2 -5 211 87 4 831 269 143 36 0 chr3 32278877 32278933 -127320850 + (CATA)n Simple_repeat Simple_repeat 2 59 0 4 831 826 219 21 0 chr3 32278958 32279145 -127320638 - B3 SINE B2 -25 191 1 4 831 484 287 0 0 chr3 32279489 32279597 -127320186 - ID_B1 SINE B4 -13 211 104 4 831 362 318 56 0 chr3 32279597 32279615 -127320168 - B1F SINE Alu -13 136 4 4 831 306 0 0 0 chr3 32279618 32279652 -127320131 + (TG)n Simple_repeat Simple_repeat 2 35 0 4 831 528 269 178 45 chr3 32279736 32279938 -127319845 - B4 SINE B4 -51 241 13 4 831 1269 293 94 32 chr3 32281018 32282082 -127317701 + L1_Rod LINE L1 900 2032 -3815 4 831 1799 278 101 32 chr3 32282393 32283017 -127316766 + Lx8 LINE L1 6130 6796 -677 4 831 1252 317 23 18 chr3 32283140 32283577 -127316206 + Lx8 LINE L1 6799 7237 -236 4 831 351 0 0 0 chr3 32283587 32283626 -127316157 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 5 831 377 169 0 0 chr3 32283635 32283700 -127316083 + RLTRETN_Mm LTR ERVK 1 65 -257 5 831 988 39 0 0 chr3 32283697 32283825 -127315958 - B1_Mus1 SINE Alu -20 128 1 5 831 490 221 59 46 chr3 32283825 32283863 -127315920 - B4 SINE B4 -202 90 51 5 831 254 308 74 37 chr3 32283864 32283999 -127315784 + Lx8 LINE L1 7270 7409 -64 4 831 395 252 157 0 chr3 32284235 32284350 -127315433 - ID_B1 SINE B4 -4 220 88 5 831 2788 232 56 47 chr3 32284389 32285156 -127314627 - RMER1C Other Other -10 1332 559 5 831 685 192 88 0 chr3 32285156 32285281 -127314502 - B1_Mur3 SINE Alu -13 136 1 5 831 888 243 10 5 chr3 32285612 32285819 -127313964 + B3 SINE B2 4 211 -5 5 831 363 239 11 0 chr3 32285855 32285947 -127313836 - Lx9 LINE L1 -171 7473 7381 5 831 298 337 0 0 chr3 32285973 32286056 -127313727 - B4A SINE B4 -177 115 33 5 831 599 138 37 1 chr3 32286040 32286155 -127313628 + MTC LTR MaLR 88 211 -208 5 831 8265 54 0 1 chr3 32286155 32287547 -127312236 + L1_Mus2 LINE L1 5176 6566 0 5 831 186 43 0 0 chr3 32287550 32287573 -127312210 + (GGAA)n Simple_repeat Simple_repeat 3 25 0 5 831 1256 153 18 5 chr3 32287574 32287797 -127311986 + MTC LTR MaLR 196 421 0 5 831 6682 224 92 32 chr3 32287797 32289634 -127310149 + Lx9 LINE L1 5689 7637 -7 5 831 430 209 18 79 chr3 32289656 32289770 -127310013 + MT2B LTR ERVL 152 258 -343 5 831 857 156 7 0 chr3 32289673 32289814 -127309969 + B1_Mus1 SINE Alu 7 148 0 5 831 901 210 30 20 chr3 32289885 32290084 -127309699 - MTEb LTR MaLR -13 366 166 5 831 843 243 11 0 chr3 32290171 32290352 -127309431 - MTEb LTR MaLR -196 183 1 5 831 836 242 38 4 chr3 32291248 32291484 -127308299 - MTEa LTR MaLR -1 378 135 5 831 294 29 0 0 chr3 32291491 32291526 -127308257 + (TG)n Simple_repeat Simple_repeat 1 35 0 5 831 551 234 39 8 chr3 32291530 32291659 -127308124 - RSINE1 SINE B4 -31 134 2 5 831 254 283 78 17 chr3 32291659 32291772 -127308011 - MTE-int LTR MaLR -92 1278 1159 5 831 451 256 23 31 chr3 32291760 32291889 -127307894 - MTE-int LTR MaLR -848 732 605 5 831 1840 197 72 51 chr3 32292118 32292605 -127307178 + RMER15 LTR ERVL 79 575 0 5 831 347 313 26 45 chr3 32292605 32292759 -127307024 + RSINE1 SINE B4 2 152 -13 5 831 256 302 17 86 chr3 32293825 32293941 -127305842 - MTEa LTR MaLR -270 109 2 5 831 370 307 16 0 chr3 32293980 32294107 -127305676 + ID_B1 SINE B4 96 224 0 5 831 398 266 9 18 chr3 32294246 32294357 -127305426 + PB1D7 SINE Alu 1 110 -10 5 831 225 323 16 0 chr3 32294573 32294635 -127305148 + ID4 SINE ID 9 71 -12 5 831 216 0 0 0 chr3 32294640 32294664 -127305119 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 5 831 1100 36 73 0 chr3 32294675 32294812 -127304971 + B1_Mus2 SINE Alu 1 147 0 5 831 234 0 0 0 chr3 32294812 32294838 -127304945 + (A)n Simple_repeat Simple_repeat 1 26 0 5 831 275 62 97 94 chr3 32295330 32295409 -127304374 - B1_Mur4 SINE Alu -51 98 19 5 831 208 245 0 64 chr3 32296133 32296242 -127303541 + G-rich Low_complexity Low_complexity 4 105 0 5 831 206 167 20 20 chr3 32296311 32296360 -127303423 + (CCG)n Simple_repeat Simple_repeat 2 50 0 5 831 189 0 0 0 chr3 32296442 32296463 -127303320 + (CGGG)n Simple_repeat Simple_repeat 1 21 0 5 831 216 179 0 82 chr3 32297304 32297389 -127302394 + T-rich Low_complexity Low_complexity 4 81 0 5 831 278 289 103 19 chr3 32299082 32299239 -127300544 + L2c LINE L2 3167 3312 -75 5 831 286 200 232 26 chr3 32300645 32300819 -127298964 + B2_Mm2 SINE B2 1 198 0 5 831 21 57 0 0 chr3 32301000 32301035 -127298748 + AT_rich Low_complexity Low_complexity 1 35 0 5 831 490 211 21 0 chr3 32301187 32301282 -127298501 + B1_Mur1 SINE Alu 38 134 -15 5 831 234 244 99 174 chr3 32301462 32301528 -127298255 + B3A SINE B2 2 56 -142 5 831 1058 58 29 0 chr3 32301528 32301667 -127298116 - B1_Mm SINE Alu 0 147 5 5 831 234 244 99 174 chr3 32301667 32301813 -127297970 + B3A SINE B2 57 198 0 5 831 235 338 0 38 chr3 32303406 32303486 -127296297 - RSINE1 SINE B4 0 165 89 5 831 751 224 204 11 chr3 32303527 32303708 -127296075 + B3 SINE B2 1 216 0 5 831 341 301 17 58 chr3 32303721 32303841 -127295942 - RSINE1 SINE B4 -43 122 8 5 831 533 222 50 50 chr3 32305092 32305253 -127294530 - RSINE1 SINE B4 -1 164 4 5 831 277 288 45 0 chr3 32305457 32305523 -127294260 + PB1D10 SINE Alu 6 74 -43 5 831 198 0 0 0 chr3 32305523 32305545 -127294238 + (TG)n Simple_repeat Simple_repeat 1 22 0 5 831 1499 236 81 25 chr3 32305688 32306158 -127293625 - RLTR16 LTR ERVK -9 496 1 5 831 364 287 176 11 chr3 32306288 32306350 -127293433 - B4A SINE B4 -1 291 113 5 831 426 173 75 28 chr3 32306350 32306457 -127293326 - PB1D9 SINE Alu 0 120 9 5 831 525 247 39 39 chr3 32306498 32306654 -127293129 - B4A SINE B4 -136 156 1 5 831 293 283 44 38 chr3 32307341 32307499 -127292284 - RMER5 LTR ERV1 -46 488 330 5 831 2848 133 149 12 chr3 32307572 32308076 -127291707 - RMER15 LTR ERVL -2 573 1 5 831 1546 53 5 0 chr3 32309664 32309853 -127289930 + B2_Mm1t SINE B2 2 191 -2 5 831 1167 56 14 0 chr3 32310014 32310158 -127289625 - B1_Mus2 SINE Alu 0 147 2 5 831 29 0 0 0 chr3 32310561 32310590 -127289193 + AT_rich Low_complexity Low_complexity 1 29 0 5 831 224 189 0 0 chr3 32310759 32310796 -127288987 + (CACG)n Simple_repeat Simple_repeat 2 38 0 5 831 204 40 0 0 chr3 32310817 32310842 -127288941 + (TG)n Simple_repeat Simple_repeat 2 26 0 5 831 596 217 149 24 chr3 32312108 32312316 -127287467 + B4A SINE B4 41 274 -18 5 831 516 211 37 45 chr3 32312541 32312675 -127287108 - B1F2 SINE Alu -12 137 5 5 831 340 289 49 49 chr3 32312713 32312855 -127286928 - RSINE1 SINE B4 -8 157 16 5 831 259 89 0 35 chr3 32312916 32312974 -127286809 + (TTTTTG)n Simple_repeat Simple_repeat 6 61 0 5 831 246 171 21 0 chr3 32313127 32313183 -127286600 - B4 SINE B4 -228 64 8 5 831 261 205 203 43 chr3 32313684 32313822 -127285961 - L1M5 LINE L1 -630 5494 5335 5 831 23 0 0 0 chr3 32314216 32314239 -127285544 + GC_rich Low_complexity Low_complexity 1 23 0 5 831 830 189 69 16 chr3 32314362 32314550 -127285233 - B3A SINE B2 0 198 1 5 831 195 69 0 0 chr3 32314564 32314593 -127285190 + (TGGGGG)n Simple_repeat Simple_repeat 5 33 0 5 831 244 218 97 13 chr3 32314604 32314688 -127285095 - PB1D10 SINE Alu -12 108 15 5 831 313 271 117 1 chr3 32314920 32315015 -127284768 - B1F1 SINE Alu -26 123 19 5 831 333 0 0 0 chr3 32315156 32315193 -127284590 + (TG)n Simple_repeat Simple_repeat 2 38 0 5 831 856 210 37 0 chr3 32315612 32315774 -127284009 - B3 SINE B2 -48 168 1 5 831 425 286 124 33 chr3 32315780 32315902 -127283881 - MTE-int LTR MaLR -1227 353 227 5 831 1775 201 102 8 chr3 32315902 32316283 -127283500 - MTD LTR MaLR 0 419 3 5 831 425 286 124 33 chr3 32316283 32316402 -127283381 - MTE-int LTR MaLR -1354 226 90 5 831 2952 129 66 66 chr3 32316418 32316990 -127282793 + RMER15 LTR ERVL 1 572 -3 5 831 354 214 11 11 chr3 32317044 32317134 -127282649 - ERVL-int LTR ERVL -1 5756 5667 5 831 455 270 0 17 chr3 32317308 32317425 -127282358 + B1F SINE Alu 33 147 -2 5 831 285 321 47 23 chr3 32317962 32318048 -127281735 + ID_B1 SINE B4 83 170 -54 5 831 1075 189 10 10 chr3 32318092 32318290 -127281493 + B3 SINE B2 2 199 -17 5 831 669 264 34 17 chr3 32318388 32318565 -127281218 + B3A SINE B2 2 181 -17 5 831 396 0 0 0 chr3 32318565 32318609 -127281174 + (TCTA)n Simple_repeat Simple_repeat 2 45 0 5 831 934 269 55 35 chr3 32319154 32319354 -127280429 - MTE2b LTR MaLR -59 320 123 5 831 1719 26 0 0 chr3 32319354 32319547 -127280236 - B2_Mm1a SINE B2 0 193 1 5 831 934 269 55 35 chr3 32319547 32319658 -127280125 - MTE2b LTR MaLR -257 122 3 5 831 630 178 108 0 chr3 32319769 32319898 -127279885 - B1_Mus1 SINE Alu 0 148 6 5 831 378 257 0 0 chr3 32319997 32320071 -127279712 + ID4_ SINE ID 8 81 -2 5 831 477 0 0 0 chr3 32321086 32321139 -127278644 + (GA)n Simple_repeat Simple_repeat 2 54 0 5 831 1449 69 21 5 chr3 32321737 32321927 -127277856 + B2_Mm2 SINE B2 2 194 -1 5 831 318 289 22 0 chr3 32322372 32322462 -127277321 - PB1D10 SINE Alu -20 97 6 5 831 2538 275 123 43 chr3 32322505 32323533 -127276250 - Lx8 LINE L1 -7 7466 6357 5 831 552 189 294 6 chr3 32323608 32323768 -127276015 - B3 SINE B2 -7 209 4 5 831 417 240 128 90 chr3 32324759 32324892 -127274891 - B3A SINE B2 -16 182 45 5 831 233 240 13 0 chr3 32324903 32324978 -127274805 + CT-rich Low_complexity Low_complexity 2 77 0 5 831 811 106 41 0 chr3 32325053 32325176 -127274607 - B2_Mm2 SINE B2 -66 129 2 5 831 354 74 0 0 chr3 32325361 32325415 -127274368 + (TG)n Simple_repeat Simple_repeat 2 55 0 5 831 575 206 276 52 chr3 32326580 32326869 -127272914 - ORR1E LTR MaLR -5 354 1 5 831 221 338 15 15 chr3 32327217 32327283 -127272500 - ID4 SINE ID -15 68 3 5 831 471 177 0 0 chr3 32327515 32327594 -127272189 + ID_B1 SINE B4 131 209 -15 5 831 1739 152 73 3 chr3 32328262 32328565 -127271218 - Lx5 LINE L1 -3 7047 6724 5 831 26 64 0 0 chr3 32328570 32328617 -127271166 + AT_rich Low_complexity Low_complexity 1 47 0 5 831 239 310 89 10 chr3 32329687 32329788 -127269995 + PB1D10 SINE Alu 1 109 -8 5 831 288 292 22 11 chr3 32329881 32329971 -127269812 + B1F SINE Alu 58 148 -1 5 831 2196 83 32 6 chr3 32330682 32330998 -127268785 + L1Md_F2 LINE L1 6259 6582 0 5 831 397 280 114 18 chr3 32331120 32331287 -127268496 + B4 SINE B4 1 183 -109 6 831 1209 54 0 0 chr3 32331466 32331613 -127268170 + B1_Mus1 SINE Alu 2 148 0 6 831 33 43 0 0 chr3 32331613 32331660 -127268123 + AT_rich Low_complexity Low_complexity 1 47 0 6 831 567 43 0 0 chr3 32332005 32332075 -127267708 + (TTCC)n Simple_repeat Simple_repeat 1 70 0 6 831 2296 115 51 22 chr3 32332301 32332656 -127267127 + ORR1B2 LTR MaLR 3 367 0 6 831 655 221 49 64 chr3 32332760 32332963 -127266820 - B3 SINE B2 -10 206 7 6 831 368 222 140 10 chr3 32333155 32333255 -127266528 - RSINE1 SINE B4 -42 123 11 6 831 493 134 211 18 chr3 32333519 32333633 -127266150 + B1_Mus1 SINE Alu 13 148 0 6 831 608 257 62 72 chr3 32333645 32333838 -127265945 + B3A SINE B2 1 191 -4 6 831 384 312 28 28 chr3 32333827 32333969 -127265814 + ID_B1 SINE B4 79 220 -4 6 831 636 258 43 6 chr3 32334038 32334202 -127265581 + B3A SINE B2 1 170 -28 6 831 1177 41 0 14 chr3 32334222 32334370 -127265413 + B1_Mus2 SINE Alu 1 146 -1 6 831 351 184 123 28 chr3 32334622 32334728 -127265055 - PB1 SINE Alu -9 118 3 6 831 313 64 0 0 chr3 32335858 32335905 -127263878 - B1_Mus2 SINE Alu 0 147 101 6 831 485 268 97 32 chr3 32337556 32337710 -127262073 + RSINE1 SINE B4 2 165 0 6 831 543 253 173 18 chr3 32337734 32337959 -127261824 + B4A SINE B4 6 265 -27 6 831 531 312 6 19 chr3 32338068 32338225 -127261558 - ID_B1 SINE B4 0 224 70 6 831 28 0 0 0 chr3 32338432 32338460 -127261323 + AT_rich Low_complexity Low_complexity 1 28 0 6 831 246 32 0 0 chr3 32339453 32339484 -127260299 + (TG)n Simple_repeat Simple_repeat 1 31 0 6 831 828 200 60 11 chr3 32340698 32340880 -127258903 + B3A SINE B2 5 195 -3 6 831 660 194 59 15 chr3 32341383 32341519 -127258264 - B1_Mur1 SINE Alu -7 142 1 6 831 279 0 0 0 chr3 32341923 32341954 -127257829 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 6 831 1218 48 0 0 chr3 32342020 32342167 -127257616 + B1_Mus2 SINE Alu 1 147 0 6 831 279 309 88 35 chr3 32344481 32344595 -127255188 + B3 SINE B2 72 191 -25 6 831 693 80 88 18 chr3 32344602 32344716 -127255067 + L1Md_F2 LINE L1 6461 6582 0 6 831 483 63 0 0 chr3 32344929 32344992 -127254791 + (TCC)n Simple_repeat Simple_repeat 1 63 0 6 831 286 257 43 116 chr3 32345093 32345326 -127254457 + Looper DNA PiggyBac 939 1154 -404 6 831 268 264 95 54 chr3 32345405 32345553 -127254230 + Looper DNA PiggyBac 1383 1536 -22 6 831 185 273 0 0 chr3 32345565 32345609 -127254174 + L2 LINE L2 2704 2747 -672 6 831 478 244 23 45 chr3 32346085 32346218 -127253565 - RSINE1 SINE B4 -13 152 23 6 831 370 262 41 28 chr3 32347097 32347242 -127252541 - B1F SINE Alu -2 147 1 6 831 861 230 70 28 chr3 32347420 32347635 -127252148 - ID_B1 SINE B4 0 224 1 6 831 374 254 163 8 chr3 32347947 32348070 -127251713 - RSINE1 SINE B4 -22 143 2 6 831 216 0 0 0 chr3 32349666 32349690 -127250093 + (CTG)n Simple_repeat Simple_repeat 3 26 0 6 831 870 58 0 0 chr3 32349690 32349811 -127249972 + (TG)n Simple_repeat Simple_repeat 2 122 0 6 831 691 201 200 6 chr3 32350456 32350636 -127249147 + B3 SINE B2 2 216 0 6 831 212 331 106 40 chr3 32350931 32351082 -127248701 + MIR SINE MIR 52 212 -50 6 831 277 194 72 29 chr3 32353817 32353886 -127245897 - MER34A LTR ERV1 -22 549 478 6 831 1260 67 0 0 chr3 32353898 32354078 -127245705 + (TG)n Simple_repeat Simple_repeat 1 180 0 6 831 347 288 225 0 chr3 32354252 32354363 -127245420 + ID_B1 SINE B4 82 217 -7 6 831 394 298 105 32 chr3 32355349 32355530 -127244253 + B3A SINE B2 15 214 -2 6 831 774 153 19 3 chr3 32355696 32355855 -127243928 - ORR1D1 LTR MaLR -216 162 1 6 831 1316 184 122 18 chr3 32355856 32356193 -127243590 - ORR1D1-int LTR MaLR -1 1369 998 6 831 338 282 117 6 chr3 32356261 32356432 -127243351 + Charlie1a DNA MER1_type 335 524 -931 6 831 229 277 15 0 chr3 32356434 32356499 -127243284 + PB1D10 SINE Alu 21 86 -31 6 831 549 313 132 36 chr3 32356561 32356789 -127242994 + Charlie1a DNA MER1_type 497 742 -713 6 831 316 196 48 137 chr3 32356789 32356913 -127242870 + PB1D10 SINE Alu 2 114 -3 6 831 549 313 132 36 chr3 32356913 32357155 -127242628 + Charlie1a DNA MER1_type 743 1012 -443 6 831 234 235 61 12 chr3 32357314 32357396 -127242387 + B3A SINE B2 19 104 -94 6 831 887 193 67 29 chr3 32357545 32357628 -127242155 - B3 SINE B2 0 216 135 6 831 2219 94 35 3 chr3 32357628 32357947 -127241836 - ORR1A4 LTR MaLR 0 329 1 6 831 887 193 67 29 chr3 32357947 32358071 -127241712 - B3 SINE B2 -82 134 1 6 831 746 83 9 0 chr3 32358257 32358366 -127241417 - ORR1A4 LTR MaLR -21 308 199 6 831 878 204 70 18 chr3 32358386 32358615 -127241168 + Lx9 LINE L1 7237 7477 -167 6 831 24 0 0 0 chr3 32358719 32358743 -127241040 + AT_rich Low_complexity Low_complexity 1 24 0 6 831 383 275 26 92 chr3 32359147 32359299 -127240484 + B3A SINE B2 48 189 -27 6 831 311 213 147 0 chr3 32359392 32359467 -127240316 + B1_Mus1 SINE Alu 8 93 -55 6 831 500 160 10 41 chr3 32359474 32359572 -127240211 + B1_Mur1 SINE Alu 42 136 -13 6 831 269 271 14 0 chr3 32359613 32359683 -127240100 + B1F SINE Alu 28 98 -51 6 831 383 300 132 27 chr3 32359700 32359910 -127239873 + B4 SINE B4 2 234 -58 6 831 542 301 65 11 chr3 32359910 32360095 -127239688 + B3A SINE B2 4 198 0 6 831 255 61 0 0 chr3 32360784 32360817 -127238966 + (CGTG)n Simple_repeat Simple_repeat 4 36 0 6 831 24 53 0 0 chr3 32362638 32362676 -127237107 + AT_rich Low_complexity Low_complexity 1 38 0 6 831 327 150 0 0 chr3 32363341 32363401 -127236382 + (A)n Simple_repeat Simple_repeat 1 60 0 6 831 188 140 0 66 chr3 32363975 32364036 -127235747 + A-rich Low_complexity Low_complexity 1 57 0 6 831 222 91 0 0 chr3 32364075 32364108 -127235675 + (TG)n Simple_repeat Simple_repeat 2 34 0 6 831 205 149 21 21 chr3 32364665 32364713 -127235070 + (TTTG)n Simple_repeat Simple_repeat 2 49 0 6 831 260 154 0 19 chr3 32366546 32366599 -127233184 + (TA)n Simple_repeat Simple_repeat 2 53 0 6 831 1130 75 0 7 chr3 32366601 32366749 -127233034 - B1_Mus1 SINE Alu 0 148 2 6 831 413 245 89 38 chr3 32366833 32366990 -127232793 + ID_B1 SINE B4 6 170 -54 6 831 345 220 70 52 chr3 32367226 32367341 -127232442 - PB1D10 SINE Alu 0 117 1 6 831 773 147 172 0 chr3 32367639 32367802 -127231981 + URR1B DNA MER1_type 35 225 0 6 831 1304 96 37 0 chr3 32368110 32368298 -127231485 + B2_Mm2 SINE B2 1 195 0 6 831 512 185 8 56 chr3 32368321 32368447 -127231336 + PB1D9 SINE Alu 1 120 0 6 831 215 295 49 0 chr3 32368588 32368649 -127231134 + ID4_ SINE ID 18 81 -2 6 831 789 249 41 0 chr3 32369924 32370121 -127229662 - B3 SINE B2 -11 205 1 6 831 315 0 0 0 chr3 32370452 32370487 -127229296 + (TG)n Simple_repeat Simple_repeat 2 36 0 6 831 347 161 16 0 chr3 32370523 32370585 -127229198 - B4A SINE B4 -229 63 1 6 831 261 273 15 0 chr3 32370915 32370981 -127228802 - ID4_ SINE ID -1 82 16 6 831 422 232 35 35 chr3 32370995 32371111 -127228672 - PB1D10 SINE Alu 0 117 2 6 831 588 222 57 32 chr3 32371702 32371860 -127227923 + RSINE1 SINE B4 2 163 -2 6 831 351 309 119 22 chr3 32372312 32372497 -127227286 + ID_B1 SINE B4 19 221 -3 6 831 180 111 0 0 chr3 32372809 32372836 -127226947 + (A)n Simple_repeat Simple_repeat 1 27 0 6 831 1017 264 82 7 chr3 32373333 32373615 -127226168 + ORR1D2 LTR MaLR 63 365 -5 6 831 402 202 141 16 chr3 32373874 32373995 -127225788 + MTEb LTR MaLR 44 179 -200 6 831 258 304 87 94 chr3 32374066 32374193 -127225590 + RMER1B Other Other 7 132 -934 6 831 878 126 0 34 chr3 32374193 32374341 -127225442 + B1_Mus1 SINE Alu 6 148 0 6 831 582 257 92 7 chr3 32374379 32374532 -127225251 + RMER1B Other Other 162 327 -739 6 103 8006 84 20 5 chr3 32374516 32376449 -127223334 + L1VL2 LINE L1 65 2030 -1585 6 832 1614 281 35 45 chr3 32376534 32377247 -127222536 - L1_Rod LINE L1 -1222 4625 3920 6 832 8447 55 1 1 chr3 32377245 32378598 -127221185 - L1_Mus1 LINE L1 0 6654 5223 6 832 253 268 0 0 chr3 32378593 32378649 -127221134 - L1_Rod LINE L1 -1911 3936 3881 6 832 234 128 0 0 chr3 32378649 32378688 -127221095 + (T)n Simple_repeat Simple_repeat 1 39 0 6 832 242 278 18 36 chr3 32378804 32378916 -127220867 + RMER1B Other Other 304 413 -653 6 832 864 257 150 43 chr3 32378902 32379429 -127220354 + RMER1A Other Other 45 445 -585 6 832 4092 169 34 1 chr3 32379437 32380149 -127219634 + RMER1A Other Other 271 1005 -25 6 832 250 297 21 52 chr3 32380160 32380256 -127219527 - Lx8 LINE L1 -270 7203 7111 6 832 537 217 36 107 chr3 32380511 32380707 -127219076 + B3A SINE B2 1 182 -16 6 832 1242 48 0 0 chr3 32380753 32380900 -127218883 + B1_Mus2 SINE Alu 1 147 0 6 832 616 103 0 0 chr3 32380918 32381015 -127218768 + RLTR11B LTR ERVK 357 453 0 6 832 279 221 21 75 chr3 32381733 32381754 -127218029 + RLTR42-int LTR ERVK 1232 1252 -4270 6 832 258 81 0 0 chr3 32381754 32381791 -127217992 + (GTTTG)n Simple_repeat Simple_repeat 2 38 0 6 832 279 221 21 75 chr3 32381791 32381862 -127217921 + RLTR42-int LTR ERVK 1253 1319 -4203 6 832 1130 65 0 7 chr3 32381894 32382033 -127217750 + B1_Mm SINE Alu 1 138 -9 6 832 443 80 0 39 chr3 32382045 32382123 -127217660 + (A)n Simple_repeat Simple_repeat 1 75 0 6 832 290 296 99 71 chr3 32382196 32382222 -127217561 + B4A SINE B4 106 141 -151 6 832 399 41 0 0 chr3 32382222 32382271 -127217512 + (TGG)n Simple_repeat Simple_repeat 3 51 0 6 832 290 296 99 71 chr3 32382271 32382426 -127217357 + B4A SINE B4 142 291 -1 6 832 185 132 26 0 chr3 32382433 32382471 -127217312 + (CA)n Simple_repeat Simple_repeat 2 40 0 6 832 731 191 0 7 chr3 32382818 32382955 -127216828 + ID_B1 SINE B4 89 224 0 6 832 625 263 34 17 chr3 32382974 32383152 -127216631 + B3A SINE B2 2 182 -16 7 832 994 39 0 0 chr3 32383189 32383317 -127216466 - B1_Mus2 SINE Alu 0 147 20 7 832 528 238 7 40 chr3 32383317 32383338 -127216445 - ID_B1 SINE B4 0 224 81 7 832 706 184 35 28 chr3 32383360 32383505 -127216278 + B1_Mur4 SINE Alu 5 150 0 7 832 571 329 0 13 chr3 32384646 32384800 -127214983 - RSINE1 SINE B4 -11 154 3 7 832 1108 66 0 0 chr3 32384853 32384990 -127214793 - B1_Mus1 SINE Alu -9 139 3 7 832 591 144 0 0 chr3 32385015 32385126 -127214657 + (TG)n Simple_repeat Simple_repeat 1 111 0 7 832 318 311 0 69 chr3 32385259 32385390 -127214393 - B4 SINE B4 -169 123 2 7 832 334 290 0 64 chr3 32385390 32385516 -127214267 - B4A SINE B4 -60 232 116 7 832 243 0 0 0 chr3 32385922 32385949 -127213834 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 7 832 1104 73 0 0 chr3 32385949 32386085 -127213698 - B1_Mus2 SINE Alu -10 137 2 7 832 347 291 55 0 chr3 32386310 32386323 -127213460 - ID_B1 SINE B4 -19 205 90 7 832 464 237 10 0 chr3 32386323 32386420 -127213363 - PB1D10 SINE Alu -11 106 9 7 832 589 265 53 6 chr3 32386826 32386997 -127212786 + B3A SINE B2 4 182 -16 7 832 282 206 0 0 chr3 32386997 32387065 -127212718 + (CA)n Simple_repeat Simple_repeat 1 68 0 7 832 631 292 45 38 chr3 32387238 32387505 -127212278 - B4A SINE B4 -22 270 2 7 832 364 296 0 0 chr3 32387505 32387597 -127212186 + B1_Mur1 SINE Alu 58 149 0 7 832 492 257 116 14 chr3 32388007 32388153 -127211630 + B3A SINE B2 2 162 -36 7 832 549 157 0 0 chr3 32388153 32388287 -127211496 + GA-rich Low_complexity Low_complexity 1 134 0 7 832 265 193 64 0 chr3 32388777 32388995 -127210788 + (CCCTG)n Simple_repeat Simple_repeat 1 231 0 7 832 466 274 26 0 chr3 32390069 32390186 -127209597 + ID_B1 SINE B4 92 211 -13 7 832 378 0 0 0 chr3 32390186 32390228 -127209555 + (TAA)n Simple_repeat Simple_repeat 1 42 0 7 832 261 221 24 168 chr3 32390533 32390544 -127209239 + B1_Mus1 SINE Alu 3 105 -39 7 832 497 157 146 18 chr3 32390544 32390654 -127209129 + ID_B1 SINE B4 93 216 -8 7 832 430 281 12 44 chr3 32391442 32391602 -127208181 + RSINE1 SINE B4 6 160 -5 7 832 922 192 45 32 chr3 32391706 32391926 -127207857 + MTC LTR MaLR 178 400 -21 7 832 571 202 50 24 chr3 32392292 32392455 -127207328 - ORR1D1 LTR MaLR -8 371 201 7 832 546 200 231 17 chr3 32392497 32392670 -127207113 - B3 SINE B2 -6 210 1 7 832 1779 198 153 11 chr3 32393374 32393761 -127206022 + MT2A LTR ERVL 1 427 -106 7 832 2832 191 6 6 chr3 32393761 32394267 -127205516 + RLTR18B LTR ERVK 3 508 -4 7 832 1779 198 153 11 chr3 32394267 32394343 -127205440 + MT2A LTR ERVL 428 530 -3 7 832 583 277 61 52 chr3 32394546 32394759 -127205024 + ID_B1 SINE B4 2 216 -8 7 832 446 238 0 155 chr3 32394943 32395115 -127204668 + B1_Mm SINE Alu 3 144 -5 7 832 266 276 54 23 chr3 32395288 32395418 -127204365 - L2a LINE L2 -7 3419 3286 7 832 258 279 25 0 chr3 32396305 32396384 -127203399 + RMER15 LTR ERVL 403 483 -92 7 832 412 248 68 34 chr3 32396600 32396717 -127203066 - ID_B1 SINE B4 -8 216 96 7 832 1323 71 0 0 chr3 32396739 32396950 -127202833 + (GGA)n Simple_repeat Simple_repeat 1 211 0 7 832 367 185 131 71 chr3 32396965 32397064 -127202719 + ID_B1 SINE B4 90 194 -30 7 832 279 0 0 0 chr3 32397072 32397103 -127202680 + (TC)n Simple_repeat Simple_repeat 1 31 0 7 832 372 200 0 0 chr3 32397106 32397186 -127202597 + (TA)n Simple_repeat Simple_repeat 2 81 0 7 832 254 250 30 128 chr3 32397586 32397719 -127202064 + ORR1C1 LTR MaLR 194 313 -66 7 832 1149 68 0 12 chr3 32397763 32397927 -127201856 + B2_Mm2 SINE B2 10 171 -24 7 832 248 256 74 37 chr3 32398590 32398671 -127201112 + ORR1C2 LTR MaLR 44 127 -247 7 832 2505 95 0 3 chr3 32398734 32399062 -127200721 + ORR1A2 LTR MaLR 1 327 0 7 832 1204 197 29 47 chr3 32399396 32399673 -127200110 + ORR1C2 LTR MaLR 111 382 -2 7 832 376 260 41 22 chr3 32399922 32400096 -127199687 + B3A SINE B2 2 181 -14 7 832 356 274 16 66 chr3 32400113 32400174 -127199609 + ID SINE ID 1 60 -164 7 832 2260 11 114 0 chr3 32400174 32400436 -127199347 + RLTR10B LTR ERVK 1 292 0 7 832 356 274 16 66 chr3 32400436 32400495 -127199288 + ID_B1 SINE B4 61 115 -109 7 832 414 247 0 10 chr3 32400526 32400624 -127199159 - MTB_Mm LTR MaLR -1 406 310 7 832 310 160 0 0 chr3 32400617 32400667 -127199116 + ORR1C1 LTR MaLR 329 378 0 7 832 585 308 0 0 chr3 32400941 32401074 -127198709 + B1F2 SINE Alu 1 133 -16 7 832 755 162 0 58 chr3 32402220 32402358 -127197425 + B1_Mur3 SINE Alu 1 130 -19 7 832 2789 147 119 29 chr3 32402364 32402616 -127197167 + RLTR33 LTR ERVK 39 326 -352 7 832 1174 62 0 14 chr3 32402616 32402764 -127197019 + B1_Mus2 SINE Alu 2 147 0 7 832 2789 147 119 29 chr3 32402764 32403098 -127196685 + RLTR33 LTR ERVK 327 678 0 7 832 375 171 45 0 chr3 32403160 32403248 -127196535 + L1M4 LINE L1 4962 5053 -1093 7 832 466 229 27 9 chr3 32403252 32403362 -127196421 + PB1D10 SINE Alu 1 112 -5 7 832 2307 113 25 43 chr3 32403774 32404170 -127195613 + MT2C_Mm LTR ERVL 87 475 0 7 832 283 191 29 14 chr3 32404170 32404236 -127195547 + B1F2 SINE Alu 20 86 -63 7 832 516 228 14 86 chr3 32404253 32404392 -127195391 + ID_B1 SINE B4 84 212 -12 7 832 706 262 82 9 chr3 32404407 32404638 -127195145 + B4 SINE B4 2 249 -43 7 832 2075 98 11 100 chr3 32404913 32405274 -127194509 + ORR1A4 LTR MaLR 1 329 0 7 832 1826 100 0 7 chr3 32405904 32406176 -127193607 + RMER19B LTR ERVK 617 886 -16 7 832 503 173 42 68 chr3 32406141 32406259 -127193524 + B1_Mus1 SINE Alu 34 148 0 7 832 1295 204 329 4 chr3 32406286 32406731 -127193052 + MT2B LTR ERVL 12 601 0 7 832 259 235 0 0 chr3 32406732 32406783 -127193000 - B1F2 SINE Alu -98 51 1 7 832 3481 23 5 0 chr3 32407061 32407455 -127192328 - MTA_Mm LTR MaLR 0 396 1 7 832 23 33 0 0 chr3 32408360 32408390 -127191393 + AT_rich Low_complexity Low_complexity 1 30 0 7 832 1033 194 14 28 chr3 32408390 32408607 -127191176 - B3 SINE B2 -2 214 1 7 832 230 254 226 71 chr3 32408907 32409074 -127190709 - B3 SINE B2 -6 192 2 7 832 228 141 30 45 chr3 32409532 32409599 -127190184 + (CAGGG)n Simple_repeat Simple_repeat 3 68 0 7 832 582 214 71 7 chr3 32410005 32410146 -127189637 - RSINE1 SINE B4 0 165 16 7 832 1139 55 7 7 chr3 32410358 32410504 -127189279 + B1_Mus1 SINE Alu 2 147 -1 7 832 267 196 0 0 chr3 32410678 32410734 -127189049 - PB1D7 SINE Alu -64 56 1 7 832 538 250 8 0 chr3 32410918 32411042 -127188741 - B1_Mur1 SINE Alu -24 125 1 7 832 876 119 0 0 chr3 32411042 32411174 -127188609 - B1_Mus1 SINE Alu -8 140 9 7 832 397 229 8 99 chr3 32411069 32411190 -127188593 - MT2B LTR ERVL -337 264 155 7 832 294 300 0 11 chr3 32412285 32412376 -127187407 + PB1D10 SINE Alu 28 117 0 7 832 664 194 47 0 chr3 32412842 32412971 -127186812 - B1_Mur2 SINE Alu -13 136 2 7 832 269 169 0 17 chr3 32413108 32413168 -127186615 + (TA)n Simple_repeat Simple_repeat 1 59 0 7 832 525 165 98 8 chr3 32413653 32413775 -127186008 - B1_Mur1 SINE Alu -1 148 16 7 832 355 244 84 30 chr3 32413664 32413795 -127185988 - ID_B1 SINE B4 -14 210 73 7 832 808 232 16 16 chr3 32413911 32414099 -127185684 - B3 SINE B2 -28 188 1 7 832 734 260 11 33 chr3 32414638 32414821 -127184962 - B3 SINE B2 -32 184 6 7 832 313 155 13 78 chr3 32414892 32414969 -127184814 + ID4_ SINE ID 2 73 -10 7 832 337 200 132 11 chr3 32414947 32415038 -127184745 + PB1D7 SINE Alu 14 115 -5 7 832 498 200 124 0 chr3 32415056 32415161 -127184622 + B1_Mur4 SINE Alu 2 119 -31 7 832 298 183 189 63 chr3 32415414 32415525 -127184258 - B3A SINE B2 -69 129 5 7 832 227 308 15 0 chr3 32415791 32415856 -127183927 + tRNA-Ala-GCA tRNA tRNA 2 67 -8 7 832 22 35 0 0 chr3 32416270 32416299 -127183484 + AT_rich Low_complexity Low_complexity 1 29 0 7 832 1034 253 248 103 chr3 32416705 32416961 -127182822 + L1MC3 LINE L1 6652 6966 -819 7 832 257 254 14 14 chr3 32416961 32417033 -127182750 + ID2 SINE ID 12 83 0 7 832 1034 253 248 103 chr3 32417033 32417688 -127182095 + L1MC3 LINE L1 6967 7777 -8 7 832 283 321 80 29 chr3 32418023 32418161 -127181622 - MIRm SINE MIR -129 147 3 7 832 358 237 92 17 chr3 32419959 32420079 -127179704 - B3 SINE B2 -6 210 82 7 832 348 294 49 0 chr3 32420080 32420182 -127179601 - PB1D7 SINE Alu -10 110 4 7 832 262 225 246 26 chr3 32420717 32420831 -127178952 + ID_B1 SINE B4 86 224 0 7 832 522 247 78 131 chr3 32420837 32420967 -127178816 + B3A SINE B2 2 119 -79 7 832 998 102 0 58 chr3 32420967 32421123 -127178660 - B1_Mus2 SINE Alu 0 147 1 7 832 522 247 78 131 chr3 32421123 32421183 -127178600 + B3A SINE B2 120 182 -16 7 832 230 284 27 0 chr3 32421212 32421286 -127178497 - MLT1C LTR MaLR -382 85 10 7 832 273 256 75 43 chr3 32421406 32421500 -127178283 + PB1D7 SINE Alu 2 98 -22 7 832 392 229 55 71 chr3 32421421 32421548 -127178235 + ID_B1 SINE B4 96 220 -4 7 832 420 20 0 0 chr3 32422470 32422519 -127177264 + (TG)n Simple_repeat Simple_repeat 2 50 0 7 832 822 240 234 50 chr3 32422519 32422883 -127176900 - RMER15 LTR ERVL -112 463 33 7 832 373 385 8 0 chr3 32422942 32423072 -127176711 - B1F2 SINE Alu -15 134 4 7 832 464 262 31 31 chr3 32423111 32423241 -127176542 - ID_B1 SINE B4 -4 220 91 8 832 245 277 24 104 chr3 32423140 32423170 -127176613 - MT2B LTR ERVL -338 263 193 8 832 316 279 38 0 chr3 32423170 32423249 -127176534 - PB1D9 SINE Alu -37 83 2 8 832 245 277 24 104 chr3 32423249 32423265 -127176518 - MT2B LTR ERVL -338 192 149 8 832 884 95 51 0 chr3 32423434 32423571 -127176212 + B1_Mus2 SINE Alu 4 147 0 8 832 531 204 19 0 chr3 32423716 32423819 -127175964 + B1_Mm SINE Alu 43 147 0 8 832 260 227 27 96 chr3 32423846 32423919 -127175864 + B4A SINE B4 225 292 0 8 832 711 200 0 8 chr3 32424134 32424265 -127175518 - B1_Mus1 SINE Alu -11 137 8 8 832 3490 97 11 63 chr3 32424800 32425340 -127174443 - RLTR1B LTR ERV1 0 512 1 8 832 273 242 42 42 chr3 32425395 32425490 -127174293 + RSINE1 SINE B4 2 96 -69 8 832 553 191 76 38 chr3 32425492 32425623 -127174160 - B1F2 SINE Alu 0 149 14 8 832 1348 98 5 10 chr3 32425642 32425838 -127173945 - B2_Mm2 SINE B2 0 195 1 8 832 198 0 0 0 chr3 32425845 32425867 -127173916 + (T)n Simple_repeat Simple_repeat 1 22 0 8 832 1353 211 99 64 chr3 32425927 32426015 -127173768 - MTD LTR MaLR -14 405 331 8 832 189 0 0 0 chr3 32426015 32426036 -127173747 + (TG)n Simple_repeat Simple_repeat 2 22 0 8 832 1353 211 99 64 chr3 32426036 32426322 -127173461 - MTD LTR MaLR -89 330 18 8 832 226 242 81 0 chr3 32426324 32426386 -127173397 - ID4_ SINE ID -16 67 1 8 832 345 314 48 78 chr3 32426421 32426515 -127173268 - B4A SINE B4 0 292 209 8 832 1094 75 0 40 chr3 32426515 32426667 -127173116 - B1_Mus2 SINE Alu 0 147 2 8 832 345 304 224 43 chr3 32426667 32426836 -127172947 - B4A SINE B4 -84 208 1 8 832 462 68 123 0 chr3 32426878 32426951 -127172832 + B1_Mur4 SINE Alu 69 150 0 8 832 524 185 27 36 chr3 32426970 32427082 -127172701 + B1_Mur2 SINE Alu 37 147 -2 8 832 234 267 17 0 chr3 32427113 32427173 -127172610 + PB1D10 SINE Alu 9 69 -48 8 832 227 54 0 26 chr3 32427174 32427212 -127172571 + (TTTTG)n Simple_repeat Simple_repeat 4 40 0 8 832 1145 82 0 14 chr3 32427225 32427373 -127172410 - B1_Mm SINE Alu -1 146 1 8 832 299 275 95 0 chr3 32427643 32427787 -127171996 - MIR SINE MIR -15 253 101 8 832 262 255 155 10 chr3 32427845 32427948 -127171835 + MER5A1 DNA MER1_type 40 157 -9 8 832 23 0 0 0 chr3 32428553 32428576 -127171207 + GC_rich Low_complexity Low_complexity 1 23 0 8 832 258 358 17 0 chr3 32429165 32429285 -127170498 - B1F SINE Alu -8 141 20 8 832 590 215 119 55 chr3 32429486 32429688 -127170095 - B3 SINE B2 0 216 2 8 832 626 0 0 13 chr3 32429708 32429783 -127170000 + (TTC)n Simple_repeat Simple_repeat 2 75 0 8 832 180 0 0 0 chr3 32429783 32429803 -127169980 + (TTTTTG)n Simple_repeat Simple_repeat 2 21 0 8 832 798 114 97 15 chr3 32429805 32429939 -127169844 - B1_Mur4 SINE Alu -1 149 5 8 832 373 214 12 12 chr3 32429996 32430081 -127169702 - RSINE1 SINE B4 -25 140 56 8 832 226 220 0 0 chr3 32430149 32430199 -127169584 - B1F1 SINE Alu -94 55 6 8 832 1007 174 13 78 chr3 32430214 32430445 -127169338 - B3 SINE B2 0 216 1 8 832 307 276 18 54 chr3 32430476 32430587 -127169196 - PB1 SINE Alu -10 117 11 8 832 234 91 0 0 chr3 32430604 32430637 -127169146 + (T)n Simple_repeat Simple_repeat 1 33 0 8 832 1247 41 0 0 chr3 32430637 32430784 -127168999 - B1_Mus2 SINE Alu 0 147 1 8 832 685 163 49 7 chr3 32432796 32432938 -127166845 - B1_Mur3 SINE Alu 0 149 2 8 832 285 167 0 0 chr3 32433449 32433503 -127166280 + CT-rich Low_complexity Low_complexity 2 55 0 8 832 513 141 33 0 chr3 32433504 32433596 -127166187 - B1_Mus2 SINE Alu -2 145 51 8 832 455 196 22 0 chr3 32433699 32433791 -127165992 - ID_B1 SINE B4 -1 223 130 8 832 730 203 0 35 chr3 32433840 32433983 -127165800 - B1_Mur2 SINE Alu 0 149 12 8 832 367 310 0 82 chr3 32433845 32434003 -127165780 - ID_B1 SINE B4 -5 219 75 8 832 216 276 52 13 chr3 32434124 32434201 -127165582 + ID4 SINE ID 2 81 -2 8 832 243 0 0 0 chr3 32434208 32434235 -127165548 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 8 832 336 205 12 35 chr3 32434967 32435053 -127164730 + B3A SINE B2 1 84 -114 8 832 275 314 23 0 chr3 32435436 32435522 -127164261 + MER21B LTR ERV1 24 111 -752 8 832 607 243 203 0 chr3 32435945 32436122 -127163661 - B3 SINE B2 0 216 4 8 832 441 305 172 19 chr3 32436419 32436876 -127162907 - MLT1H1 LTR MaLR -19 560 1 8 832 1039 192 38 14 chr3 32437663 32437874 -127161909 - B3 SINE B2 0 216 1 8 832 1065 44 0 0 chr3 32437957 32438092 -127161691 + (TCTCCC)n Simple_repeat Simple_repeat 4 138 0 8 832 607 240 0 58 chr3 32438092 32438237 -127161546 - B1_Mur1 SINE Alu -10 139 4 8 832 515 152 71 0 chr3 32438379 32438478 -127161305 - ORR1D1 LTR MaLR -268 106 1 8 832 270 162 101 14 chr3 32438863 32438932 -127160851 + PB1D9 SINE Alu 45 119 -1 8 832 639 162 43 0 chr3 32438954 32439071 -127160712 - B3 SINE B2 -6 210 89 8 832 1172 72 105 23 chr3 32439090 32439262 -127160521 - B2_Mm2 SINE B2 -7 188 3 8 832 324 167 0 0 chr3 32439283 32439355 -127160428 + (TG)n Simple_repeat Simple_repeat 2 73 0 8 832 349 298 17 9 chr3 32439448 32439563 -127160220 - B3A SINE B2 -81 117 2 8 832 265 181 123 14 chr3 32439588 32439661 -127160122 - ID4 SINE ID 0 83 3 8 832 812 239 59 10 chr3 32439753 32439956 -127159827 + B3 SINE B2 1 213 -3 8 832 320 263 169 25 chr3 32440066 32440226 -127159557 - B3 SINE B2 -6 210 28 8 832 360 241 300 24 chr3 32440249 32440419 -127159364 - ID_B1 SINE B4 0 224 8 8 832 22 35 0 0 chr3 32440677 32440706 -127159077 + AT_rich Low_complexity Low_complexity 1 29 0 8 832 334 212 32 86 chr3 32440729 32440822 -127158961 + PB1D7 SINE Alu 17 104 -16 8 832 591 238 0 37 chr3 32441165 32441300 -127158483 + B3 SINE B2 85 214 -2 8 832 189 0 0 0 chr3 32441301 32441322 -127158461 + (CA)n Simple_repeat Simple_repeat 2 22 0 8 832 647 167 0 7 chr3 32441321 32441460 -127158323 + (TA)n Simple_repeat Simple_repeat 2 139 0 8 832 293 270 43 30 chr3 32441547 32441653 -127158130 + PB1D10 SINE Alu 1 118 -31 8 832 222 136 0 0 chr3 32442004 32442048 -127157735 + (GGA)n Simple_repeat Simple_repeat 3 46 0 8 832 235 275 38 0 chr3 32442242 32442322 -127157461 - ID4_ SINE ID 0 83 1 8 832 832 171 13 40 chr3 32442487 32442639 -127157144 - B1_Mur3 SINE Alu 0 149 2 8 832 1367 105 21 0 chr3 32443640 32443831 -127155952 + B2_Mm2 SINE B2 1 195 0 8 832 346 308 137 0 chr3 32444751 32444868 -127154915 + ID_B1 SINE B4 74 206 -18 8 832 504 167 47 47 chr3 32445085 32445192 -127154591 - B1_Mur1 SINE Alu 0 149 43 8 832 222 337 47 0 chr3 32445733 32445819 -127153964 + PB1D10 SINE Alu 1 90 -27 8 832 279 268 76 51 chr3 32445754 32445872 -127153911 + ID_B1 SINE B4 104 224 0 8 832 537 271 126 6 chr3 32445967 32446149 -127153634 - B3 SINE B2 -11 205 2 8 832 246 320 21 0 chr3 32446340 32446437 -127153346 - PB1D10 SINE Alu -8 109 11 8 832 404 271 93 0 chr3 32446365 32446494 -127153289 - ID_B1 SINE B4 -60 164 24 8 832 233 211 19 0 chr3 32446449 32446501 -127153282 - tRNA-Ala-GCY_ tRNA tRNA -9 66 14 8 832 588 238 0 70 chr3 32446527 32446572 -127153211 + B1_Mm SINE Alu 1 42 -105 8 832 1177 125 123 15 chr3 32446572 32446775 -127153008 - URR1A DNA MER1_type -1 225 1 8 832 588 238 0 70 chr3 32446775 32446887 -127152896 + B1_Mm SINE Alu 43 147 0 8 832 525 190 184 0 chr3 32447220 32447378 -127152405 - B3 SINE B2 -29 187 1 8 832 506 262 16 72 chr3 32447417 32447610 -127152173 - ID_B1 SINE B4 -42 182 1 8 832 255 245 0 20 chr3 32447626 32447664 -127152119 + T-rich Low_complexity Low_complexity 61 98 0 8 832 279 0 0 0 chr3 32447664 32447695 -127152088 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 8 832 1195 49 0 0 chr3 32447695 32447838 -127151945 - B1_Mus1 SINE Alu -2 146 4 8 832 255 245 0 20 chr3 32447838 32447898 -127151885 + T-rich Low_complexity Low_complexity 2 60 0 8 832 263 293 80 0 chr3 32447902 32447977 -127151806 - ID SINE ID -141 83 3 8 832 8094 73 11 9 chr3 32448033 32449517 -127150266 - L1_Mus3 LINE L1 -4 6634 5150 8 832 9920 97 42 33 chr3 32449518 32451677 -127148106 - L1VL1 LINE L1 -1163 2535 327 8 832 1120 109 91 6 chr3 32451677 32451693 -127148090 - B2_Mm1a SINE B2 -1 192 177 8 832 207 0 0 0 chr3 32451693 32451716 -127148067 + (TTTA)n Simple_repeat Simple_repeat 3 25 0 8 832 1120 109 91 6 chr3 32451716 32451874 -127147909 - B2_Mm1a SINE B2 -17 176 4 8 832 4681 151 51 33 chr3 32451874 32451999 -127147784 - L1VL1 LINE L1 -6096 326 227 8 832 235 287 98 108 chr3 32451999 32452134 -127147649 - B1F1 SINE Alu -16 131 1 8 832 309 278 87 67 chr3 32452032 32452136 -127147647 - ID_B1 SINE B4 -39 185 80 8 832 524 243 196 7 chr3 32452161 32452314 -127147469 - B3A SINE B2 -16 182 1 8 832 1155 234 144 0 chr3 32452684 32452975 -127146808 - ORR1D2 LTR MaLR -37 333 1 8 832 482 297 203 21 chr3 32453469 32453799 -127145984 + Tigger7 DNA MER2_type 244 635 -1856 8 832 1340 207 144 22 chr3 32453799 32454159 -127145624 + MTD LTR MaLR 1 404 -15 8 832 241 206 78 16 chr3 32454293 32454357 -127145426 + B1F SINE Alu 49 148 -1 8 832 509 71 222 0 chr3 32454796 32454895 -127144888 + B1_Mur4 SINE Alu 18 138 -12 8 832 899 202 58 19 chr3 32455172 32455379 -127144404 - MTD LTR MaLR -9 410 196 9 832 712 146 54 0 chr3 32455387 32455517 -127144266 - B1_Mur4 SINE Alu 0 150 14 9 832 255 207 30 121 chr3 32455429 32455528 -127144255 - MT2B LTR ERVL -343 258 169 9 832 328 127 27 27 chr3 32456048 32456121 -127143662 + CT-rich Low_complexity Low_complexity 2 74 0 9 832 345 283 126 35 chr3 32456134 32456277 -127143506 - RSINE1 SINE B4 0 165 10 9 832 255 61 0 0 chr3 32456284 32456317 -127143466 + (TTG)n Simple_repeat Simple_repeat 1 33 0 9 832 454 241 58 36 chr3 32456318 32456456 -127143327 - B1F2 SINE Alu -6 143 3 9 832 268 262 12 23 chr3 32456383 32456469 -127143314 - MT2B2 LTR ERVL -346 238 154 9 832 21 36 0 0 chr3 32456480 32456508 -127143275 + AT_rich Low_complexity Low_complexity 1 28 0 9 832 369 305 67 67 chr3 32456513 32456575 -127143208 - B3A SINE B2 -33 165 102 9 832 198 71 0 0 chr3 32456575 32456603 -127143180 + (CGGG)n Simple_repeat Simple_repeat 2 29 0 9 832 369 305 67 67 chr3 32456603 32456705 -127143078 - B3A SINE B2 -97 101 1 9 832 233 116 0 104 chr3 32456937 32457014 -127142769 + C-rich Low_complexity Low_complexity 2 70 0 9 832 259 130 21 16 chr3 32457024 32457089 -127142694 - PB1D9 SINE Alu -8 142 70 9 832 364 277 69 0 chr3 32457102 32457203 -127142580 - PB1 SINE Alu -2 125 18 9 832 237 291 170 41 chr3 32457203 32457247 -127142536 - ID_B1 SINE B4 -1 221 58 9 832 277 297 9 90 chr3 32457279 32457390 -127142393 + PB1 SINE Alu 23 124 -3 9 832 240 193 35 0 chr3 32458600 32458657 -127141126 + (TA)n Simple_repeat Simple_repeat 2 60 0 9 832 1316 105 16 10 chr3 32458737 32458929 -127140854 + B2_Mm2 SINE B2 2 194 -1 9 832 1415 95 16 0 chr3 32459168 32459357 -127140426 + B2_Mm2 SINE B2 2 193 -2 9 832 311 346 29 29 chr3 32459514 32459557 -127140226 + ID SINE ID 36 78 -146 9 832 527 223 1 0 chr3 32459557 32459674 -127140109 + B1F SINE Alu 1 118 -2 9 832 182 37 37 0 chr3 32459675 32459702 -127140081 + (CA)n Simple_repeat Simple_repeat 2 29 0 9 832 273 281 12 0 chr3 32461132 32461214 -127138569 - B1F SINE Alu -66 83 1 9 832 249 333 24 0 chr3 32461454 32461538 -127138245 - MER58B DNA MER1_type 0 341 256 9 832 532 256 32 0 chr3 32463384 32463509 -127136274 - RSINE1 SINE B4 -34 131 3 9 832 605 305 6 6 chr3 32463603 32463778 -127136005 + B3A SINE B2 4 178 -20 9 832 776 229 10 96 chr3 32463853 32464061 -127135722 + B3A SINE B2 1 190 -8 9 832 277 296 78 13 chr3 32464699 32464853 -127134930 - L1MA5 LINE L1 -370 5930 5767 9 832 514 171 171 0 chr3 32464960 32465071 -127134712 - B1_Mur4 SINE Alu -20 130 1 9 832 266 148 0 18 chr3 32465334 32465389 -127134394 + CT-rich Low_complexity Low_complexity 3 56 0 9 832 213 309 0 24 chr3 32465405 32465488 -127134295 - PB1D10 SINE Alu -36 81 1 9 832 421 211 104 19 chr3 32465487 32465593 -127134190 - PB1D10 SINE Alu 0 127 13 9 832 279 314 37 8 chr3 32465507 32465625 -127134158 - ID_B1 SINE B4 -45 179 64 9 832 520 259 98 55 chr3 32465655 32466009 -127133774 - L1M4 LINE L1 -632 5546 5164 9 832 360 242 115 27 chr3 32466033 32466153 -127133630 - B1F SINE Alu -31 118 9 9 832 390 250 133 9 chr3 32466516 32466621 -127133162 + B3A SINE B2 4 121 -77 9 832 292 265 61 0 chr3 32466741 32466839 -127132944 + PB1 SINE Alu 14 117 -10 9 832 1133 88 0 0 chr3 32466901 32467048 -127132735 - B1_Mm SINE Alu 0 147 1 9 832 309 26 0 0 chr3 32467442 32467480 -127132303 + (CA)n Simple_repeat Simple_repeat 2 39 0 9 832 695 249 69 10 chr3 32467992 32468195 -127131588 + B3 SINE B2 1 215 -1 9 832 350 210 49 0 chr3 32468875 32468956 -127130827 - PB1D7 SINE Alu 0 120 36 9 832 575 212 0 5 chr3 32469094 32469237 -127130546 - B1_Mur4 SINE Alu 0 149 10 9 832 760 230 6 12 chr3 32469658 32469821 -127129962 - B3 SINE B2 -53 163 2 9 832 746 309 65 17 chr3 32470287 32470577 -127129206 - Lx9 LINE L1 -910 6734 6431 9 832 2045 215 69 15 chr3 32470577 32471111 -127128672 - RLTR20B1 LTR ERVK 0 563 1 9 832 320 284 31 10 chr3 32471111 32471207 -127128576 - Lx8 LINE L1 -1179 6294 6197 9 832 417 20 0 0 chr3 32471208 32471258 -127128525 + (TG)n Simple_repeat Simple_repeat 1 50 0 9 832 391 192 234 32 chr3 32471311 32471435 -127128348 + B1_Mur4 SINE Alu 1 149 -1 9 832 441 0 0 0 chr3 32471481 32471530 -127128253 + (GA)n Simple_repeat Simple_repeat 2 50 0 9 832 846 196 90 47 chr3 32471542 32471821 -127127962 - Lx8 LINE L1 -10 5837 5547 9 832 1962 140 45 6 chr3 32471831 32472273 -127127510 - RLTR33 LTR ERVK -167 511 1 9 832 1023 214 178 53 chr3 32472411 32472548 -127127235 - Lx8 LINE L1 -456 5391 5249 9 832 252 0 0 0 chr3 32472548 32472576 -127127207 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 9 832 1023 214 178 53 chr3 32472576 32472814 -127126969 - Lx8 LINE L1 -599 5248 4969 9 832 700 108 119 37 chr3 32472952 32473086 -127126697 + B1_Mur3 SINE Alu 5 149 0 9 832 828 143 43 7 chr3 32473312 32473453 -127126330 - B1_Mus1 SINE Alu -2 146 1 9 832 459 256 33 188 chr3 32473602 32473847 -127125936 + B3 SINE B2 3 209 -7 9 832 426 97 65 12 chr3 32474020 32474113 -127125670 + Lx LINE L1 6585 6651 -3 9 832 600 199 72 36 chr3 32474204 32474397 -127125386 + RMER13A LTR ERVK 14 213 -647 9 832 313 207 61 0 chr3 32474392 32474474 -127125309 + ID_B1 SINE B4 134 220 -4 9 832 796 76 47 31 chr3 32477236 32477364 -127122419 - B1_Mus2 SINE Alu -8 139 17 9 832 418 136 12 24 chr3 32478432 32478515 -127121268 - B1_Mus2 SINE Alu 0 147 66 9 832 1449 50 50 0 chr3 32478599 32478779 -127121004 + B2_Mm2 SINE B2 2 190 -5 9 832 21 0 0 0 chr3 32478782 32478803 -127120980 + AT_rich Low_complexity Low_complexity 1 21 0 9 832 391 250 18 44 chr3 32478867 32478980 -127120803 - PB1D10 SINE Alu -3 114 5 9 832 234 174 0 0 chr3 32479090 32479136 -127120647 + GA-rich Low_complexity Low_complexity 3 48 0 9 832 421 248 184 0 chr3 32480273 32480398 -127119385 - B3A SINE B2 -36 162 15 9 832 759 199 199 0 chr3 32481199 32481370 -127118413 - B3 SINE B2 -9 207 3 9 832 264 194 113 0 chr3 32481440 32481502 -127118281 - BC1_Mm scRNA scRNA -77 75 7 9 832 239 233 110 0 chr3 32482830 32482903 -127116880 + ID2 SINE ID 1 81 -2 9 832 214 237 0 26 chr3 32482990 32483068 -127116715 + (TA)n Simple_repeat Simple_repeat 2 77 0 9 832 338 324 10 0 chr3 32484382 32484484 -127115299 - ID_B1 SINE B4 -13 211 109 9 832 1885 138 180 2 chr3 32484570 32484992 -127114791 - RMER6A LTR ERVK 0 756 260 9 832 263 93 0 23 chr3 32485645 32485689 -127114094 + (TAA)n Simple_repeat Simple_repeat 2 44 0 9 832 343 195 134 0 chr3 32485707 32485789 -127113994 - PB1D10 SINE Alu 0 117 25 9 832 278 323 63 21 chr3 32485732 32485827 -127113956 - ID_B1 SINE B4 -62 162 64 9 832 28 29 0 0 chr3 32485879 32485914 -127113869 + AT_rich Low_complexity Low_complexity 1 35 0 9 832 422 241 78 35 chr3 32486080 32486222 -127113561 + B1F1 SINE Alu 1 148 -1 9 832 546 195 35 26 chr3 32486888 32487004 -127112779 - PB1D7 SINE Alu -2 118 2 9 832 616 271 24 145 chr3 32487476 32487808 -127111975 + B4A SINE B4 1 292 0 9 832 505 261 14 28 chr3 32488193 32488335 -127111448 - ID_B1 SINE B4 -3 221 82 9 832 585 200 121 91 chr3 32488358 32488589 -127111194 - B4A SINE B4 -3 289 52 9 832 194 0 39 0 chr3 32488595 32488621 -127111162 + (CAAA)n Simple_repeat Simple_repeat 4 30 0 9 832 307 311 50 16 chr3 32489218 32489339 -127110444 + RMER30 DNA MER1_type 5 129 -73 9 832 535 214 25 33 chr3 32490497 32490618 -127109165 - B3A SINE B2 -74 124 5 9 832 470 189 65 19 chr3 32490675 32490783 -127109000 - B1_Mur1 SINE Alu -1 148 36 9 832 197 33 33 0 chr3 32491114 32491144 -127108639 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 9 832 568 264 14 12 chr3 32491673 32491837 -127107946 + ID_B1 SINE B4 80 248 -44 9 832 181 139 47 0 chr3 32491840 32491883 -127107900 + GA-rich Low_complexity Low_complexity 2 46 0 9 832 470 280 40 0 chr3 32492762 32492887 -127106896 - RSINE1 SINE B4 -33 132 3 9 832 844 143 0 21 chr3 32493147 32493290 -127106493 + B1_Mur3 SINE Alu 10 149 0 9 832 367 245 0 31 chr3 32493838 32493935 -127105848 + PB1D10 SINE Alu 22 115 -2 9 832 300 27 0 0 chr3 32495683 32495720 -127104063 + (TG)n Simple_repeat Simple_repeat 1 37 0 9 832 217 49 98 0 chr3 32495722 32495763 -127104020 + (CAGAGA)n Simple_repeat Simple_repeat 2 46 0 9 832 439 240 39 31 chr3 32495771 32495900 -127103883 - RSINE1 SINE B4 -34 131 2 9 832 943 175 42 52 chr3 32496152 32496345 -127103438 + B3 SINE B2 23 213 -3 9 832 21 0 0 0 chr3 32496811 32496832 -127102951 + AT_rich Low_complexity Low_complexity 1 21 0 9 832 264 245 73 120 chr3 32497582 32497776 -127102007 - L1M4 LINE L1 -566 5605 5420 9 832 392 139 0 12 chr3 32497833 32497913 -127101870 + (TG)n Simple_repeat Simple_repeat 2 80 0 9 832 392 306 38 16 chr3 32497921 32498107 -127101676 - L1M4 LINE L1 -790 5356 5167 9 832 545 255 37 6 chr3 32498108 32498270 -127101513 - B3A SINE B2 0 198 32 9 832 939 232 24 10 chr3 32498751 32498960 -127100823 - B3 SINE B2 -4 212 1 9 832 1325 148 28 5 chr3 32499296 32499514 -127100269 - URR1B DNA MER1_type 0 225 3 9 832 1196 157 38 111 chr3 32499589 32499933 -127099850 + ORR1A4 LTR MaLR 1 319 -10 9 832 287 220 60 13 chr3 32500259 32500359 -127099424 - B1F SINE Alu -32 117 8 1 832 756 168 23 0 chr3 32500638 32500769 -127099014 - RSINE1 SINE B4 -29 136 3 2 832 254 211 151 13 chr3 32500841 32500921 -127098862 - B1F SINE Alu -3 146 35 3 832 4409 12 0 0 chr3 32501401 32501883 -127097900 + LTRIS_Mm LTR ERV1 1 482 0 4 832 817 141 23 0 chr3 32502053 32502181 -127097602 - B1_Mus2 SINE Alu -8 139 9 5 832 1185 68 0 0 chr3 32502183 32502330 -127097453 + B1_Mm SINE Alu 1 147 0 6 832 547 281 79 105 chr3 32502469 32502887 -127096896 + RMER10A LTR ERVL 12 418 -24 7 832 403 206 120 9 chr3 32503057 32503165 -127096618 - PB1D9 SINE Alu 0 120 1 8 832 1775 188 33 38 chr3 32503230 32503595 -127096188 + ORR1D1 LTR MaLR 12 374 0 9 832 556 266 152 72 chr3 32503851 32503872 -127095911 - B4 SINE B4 -2 290 272 1 832 321 89 0 0 chr3 32503872 32503917 -127095866 + (CA)n Simple_repeat Simple_repeat 1 45 0 1 832 556 266 152 72 chr3 32503917 32503940 -127095843 - B4 SINE B4 -21 271 255 1 832 2205 138 108 8 chr3 32503940 32504321 -127095462 - MTC LTR MaLR -2 419 1 1 832 556 266 152 72 chr3 32504321 32504498 -127095285 - B4 SINE B4 -38 254 50 1 832 355 317 176 23 chr3 32504582 32504965 -127094818 + L2a LINE L2 2941 3376 -50 1 832 412 364 71 22 chr3 32505406 32505729 -127094054 + MTE-int LTR MaLR 769 1107 -473 1 832 393 39 0 0 chr3 32505787 32505838 -127093945 + (CA)n Simple_repeat Simple_repeat 2 52 0 1 833 307 352 131 15 chr3 32505883 32506143 -127093640 - B4 SINE B4 -1 291 2 1 833 649 294 28 6 chr3 32506777 32506955 -127092828 - B4A SINE B4 -6 286 105 1 833 258 256 268 0 chr3 32507158 32507240 -127092543 - PB1D10 SINE Alu -13 104 1 1 833 473 141 0 0 chr3 32507606 32507670 -127092113 + B1_Mur4 SINE Alu 23 86 -64 1 833 192 125 0 0 chr3 32507670 32507702 -127092081 + (TG)n Simple_repeat Simple_repeat 2 33 0 2 833 522 213 188 8 chr3 32507706 32507834 -127091949 + RSINE1 SINE B4 1 151 -14 2 833 334 94 15 15 chr3 32507851 32507916 -127091867 + (CA)n Simple_repeat Simple_repeat 2 66 0 2 833 385 197 0 38 chr3 32508822 32508901 -127090882 - PB1D9 SINE Alu 0 120 45 2 833 256 271 130 96 chr3 32508931 32509139 -127090644 + RLTR12B LTR ERVK 119 333 -195 2 833 273 208 0 40 chr3 32509246 32509296 -127090487 - B1_Mus2 SINE Alu -97 50 3 2 833 649 320 35 15 chr3 32509324 32509527 -127090256 - ID_B1 SINE B4 -1 223 17 2 833 270 0 0 0 chr3 32509539 32509569 -127090214 + (ATTG)n Simple_repeat Simple_repeat 1 30 0 2 833 236 150 143 48 chr3 32509915 32509978 -127089805 + MTE2b LTR MaLR 1 69 -310 2 833 315 0 0 0 chr3 32510011 32510046 -127089737 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 2 833 685 100 90 9 chr3 32510061 32510172 -127089611 - B2_Mm2 SINE B2 -75 120 1 3 833 987 252 46 62 chr3 32510172 32510475 -127089308 + MTE2b LTR MaLR 73 370 -9 2 833 262 274 111 19 chr3 32510666 32510774 -127089009 + PB1D7 SINE Alu 1 118 -2 3 833 258 241 76 0 chr3 32510993 32511072 -127088711 - L1MC4a LINE L1 -989 6893 6809 3 833 308 345 44 101 chr3 32511116 32511301 -127088482 - L1MC4a LINE L1 -1182 6700 6526 3 833 659 190 168 0 chr3 32511301 32511480 -127088303 - ID_B1 SINE B4 -14 210 2 3 833 308 345 44 101 chr3 32511480 32511547 -127088236 - L1MC4a LINE L1 -1357 6525 6460 3 833 1417 171 191 9 chr3 32511547 32511872 -127087911 - ORR1C2 LTR MaLR 0 384 1 3 833 308 345 44 101 chr3 32511872 32511915 -127087868 - L1MC4a LINE L1 -1423 6459 6421 3 833 327 228 79 0 chr3 32512135 32512236 -127087547 - B3 SINE B2 -12 204 96 3 833 747 225 293 15 chr3 32512465 32512788 -127086995 - MTD LTR MaLR 0 419 7 3 833 804 188 0 45 chr3 32512997 32513153 -127086630 + B1_Mur4 SINE Alu 1 149 -1 3 833 526 122 10 10 chr3 32513156 32513255 -127086528 + (GA)n Simple_repeat Simple_repeat 2 100 0 3 833 265 241 54 54 chr3 32513462 32513554 -127086229 - PB1D10 SINE Alu -2 115 24 3 833 216 0 0 0 chr3 32514217 32514241 -127085542 + (A)n Simple_repeat Simple_repeat 1 24 0 4 833 495 0 0 0 chr3 32515099 32515154 -127084629 + (TG)n Simple_repeat Simple_repeat 2 56 0 4 833 22 0 0 0 chr3 32515263 32515285 -127084498 + GC_rich Low_complexity Low_complexity 1 22 0 4 833 207 0 0 0 chr3 32515503 32515526 -127084257 + (CGGGGG)n Simple_repeat Simple_repeat 4 26 0 4 833 225 314 46 37 chr3 32516905 32517014 -127082769 - MIRc SINE MIR -115 153 44 4 833 553 115 21 0 chr3 32517558 32517654 -127082129 + (GA)n Simple_repeat Simple_repeat 2 99 0 4 833 299 211 11 0 chr3 32517700 32517790 -127081993 + (CA)n Simple_repeat Simple_repeat 2 92 0 4 833 439 280 9 0 chr3 32518420 32518527 -127081256 + B3A SINE B2 61 168 -30 4 833 369 0 0 0 chr3 32518529 32518570 -127081213 + (CA)n Simple_repeat Simple_repeat 1 41 0 4 833 225 0 0 0 chr3 32518863 32518888 -127080895 + (CA)n Simple_repeat Simple_repeat 2 26 0 4 833 297 0 0 0 chr3 32519151 32519184 -127080599 + (TG)n Simple_repeat Simple_repeat 1 33 0 5 833 576 338 139 23 chr3 32519226 32519571 -127080212 - MLT1G1 LTR MaLR -55 524 140 5 833 276 265 73 73 chr3 32519674 32519784 -127079999 + PB1D7 SINE Alu 6 115 -5 5 833 2091 130 76 157 chr3 32519910 32520395 -127079388 + RLTR41 LTR ERV1 1 446 0 5 833 1157 209 75 19 chr3 32520477 32520745 -127079038 + MTD LTR MaLR 5 287 -132 5 833 1113 207 205 27 chr3 32520739 32521031 -127078752 + MTD LTR MaLR 24 381 -38 5 833 1342 209 117 35 chr3 32521031 32521373 -127078410 + ORR1D2 LTR MaLR 1 370 0 5 833 1113 207 205 27 chr3 32521373 32521412 -127078371 + MTD LTR MaLR 382 414 -5 5 833 250 315 167 42 chr3 32521458 32521554 -127078229 - PB1D7 SINE Alu -12 108 1 5 833 451 248 35 17 chr3 32521561 32521676 -127078107 - PB1D9 SINE Alu -3 117 1 5 833 258 268 155 0 chr3 32521927 32521998 -127077785 - PB1D10 SINE Alu -21 96 15 5 833 17985 6 0 1 chr3 32522075 32525458 -127074325 - L1Md_A LINE L1 -2641 3242 1 6 833 1117 127 15 86 chr3 32525458 32525690 -127074093 + RLTR16 LTR ERVK 34 296 -267 6 833 592 259 7 0 chr3 32525763 32525906 -127073877 - Lx8 LINE L1 -933 6540 6397 6 833 2374 142 47 12 chr3 32525962 32526368 -127073415 - MTC LTR MaLR 0 421 2 6 833 599 293 223 25 chr3 32526556 32526794 -127072989 - MTEa LTR MaLR -8 371 69 6 833 826 208 63 19 chr3 32527755 32527961 -127071822 + B3 SINE B2 1 215 -1 6 833 601 222 149 23 chr3 32528084 32528259 -127071524 + ORR1E LTR MaLR 1 197 -162 6 833 239 131 16 0 chr3 32528259 32528320 -127071463 - Lx5 LINE L1 -38 7012 6951 6 833 248 154 0 0 chr3 32528341 32528380 -127071403 - Lx5 LINE L1 -78 6972 6934 6 833 3710 45 0 7 chr3 32528421 32528918 -127070865 - L1_Mus1 LINE L1 0 6567 6127 6 833 387 0 0 0 chr3 32529070 32529113 -127070670 + (CA)n Simple_repeat Simple_repeat 2 44 0 6 833 24 0 0 0 chr3 32529616 32529640 -127070143 + AT_rich Low_complexity Low_complexity 1 24 0 7 833 1665 269 67 16 chr3 32529765 32530131 -127069652 - Lx8 LINE L1 -173 7300 6925 7 833 3251 160 30 2 chr3 32530131 32530688 -127069095 + RMER15 LTR ERVL 3 575 0 7 833 1665 269 67 16 chr3 32530688 32530771 -127069012 - Lx8 LINE L1 -549 6924 6828 7 833 366 68 26 26 chr3 32530826 32530902 -127068881 + (TATAA)n Simple_repeat Simple_repeat 5 80 0 7 833 206 302 33 25 chr3 32530969 32531075 -127068708 - MIRc SINE MIR -64 198 87 7 833 478 196 10 10 chr3 32532081 32532179 -127067604 - PB1D9 SINE Alu -9 111 14 7 833 571 41 20 20 chr3 32532895 32532995 -127066788 + L1_Mus3 LINE L1 6539 6638 0 7 833 591 275 85 30 chr3 32533805 32534004 -127065779 + B4A SINE B4 6 215 -77 7 833 510 109 0 0 chr3 32534004 32534096 -127065687 + (TC)n Simple_repeat Simple_repeat 1 92 0 7 833 338 246 35 0 chr3 32534186 32534300 -127065483 + L1MA9 LINE L1 6195 6312 0 7 833 393 22 0 0 chr3 32534382 32534428 -127065355 + (TG)n Simple_repeat Simple_repeat 1 46 0 8 833 518 282 97 0 chr3 32534438 32534562 -127065221 - RSINE1 SINE B4 -22 143 8 8 833 2708 43 12 0 chr3 32534751 32535079 -127064704 + IAPEY_LTR LTR ERVK 54 385 0 8 833 302 239 33 33 chr3 32535322 32535413 -127064370 - MTEa LTR MaLR 0 379 289 8 833 1372 89 16 0 chr3 32535736 32535927 -127063856 - B2_Mm2 SINE B2 -1 194 1 8 833 442 267 23 8 chr3 32536037 32536169 -127063614 - B1F SINE Alu -14 135 2 8 833 192 259 0 0 chr3 32536187 32536241 -127063542 + CT-rich Low_complexity Low_complexity 3 56 0 8 833 769 291 61 0 chr3 32536384 32536549 -127063234 - B3 SINE B2 -5 211 37 8 833 434 136 12 0 chr3 32536556 32536637 -127063146 + (TCC)n Simple_repeat Simple_repeat 1 82 0 8 833 632 221 11 167 chr3 32536641 32536815 -127062968 - B1_Mur2 SINE Alu 0 149 3 8 833 300 264 17 117 chr3 32536715 32536835 -127062948 - MT2B LTR ERVL -344 257 150 9 833 234 279 29 0 chr3 32537672 32537740 -127062043 - MIR3 SINE MIR -1 207 138 9 833 459 265 28 56 chr3 32538113 32538257 -127061526 + ID_B1 SINE B4 76 215 -9 9 833 21 36 0 0 chr3 32538271 32538299 -127061484 + AT_rich Low_complexity Low_complexity 1 28 0 9 833 900 146 15 0 chr3 32538319 32538456 -127061327 + B1_Mur4 SINE Alu 2 140 -10 9 833 1662 202 52 41 chr3 32538718 32539014 -127060769 + ORR1D1 LTR MaLR 1 302 -72 9 833 3366 43 2 0 chr3 32539014 32539409 -127060374 + MTA_Mm LTR MaLR 1 396 0 9 833 1662 202 52 41 chr3 32539409 32539474 -127060309 + ORR1D1 LTR MaLR 303 366 -8 9 833 607 267 62 62 chr3 32539507 32539715 -127060068 - RLTR31_Mur LTR ERVK 0 553 346 9 833 726 310 86 56 chr3 32539690 32540071 -127059712 - RLTR17 LTR ERVK -207 485 60 9 833 288 274 141 20 chr3 32540311 32540460 -127059323 + YREP_Mm Unknown Unknown 128 294 -1518 9 833 753 239 84 0 chr3 32540355 32540522 -127059261 - ID_B1 SINE B4 -4 220 40 1 833 228 135 0 0 chr3 32541548 32541585 -127058198 + (TTCC)n Simple_repeat Simple_repeat 2 38 0 1 833 1258 217 15 30 chr3 32541586 32541857 -127057926 + MTD LTR MaLR 18 284 -135 1 833 578 195 154 15 chr3 32541892 32542022 -127057761 + B1_Mur3 SINE Alu 1 148 -1 1 833 409 253 11 11 chr3 32542114 32542206 -127057577 + RSINE1 SINE B4 3 94 -71 1 833 245 219 0 0 chr3 32542215 32542256 -127057527 - PB1D9 SINE Alu -79 41 1 1 833 244 250 39 0 chr3 32542256 32542267 -127057516 - ID_B1 SINE B4 -102 122 69 1 833 704 199 60 0 chr3 32542308 32542459 -127057324 - MTD LTR MaLR 0 419 260 1 833 551 296 28 0 chr3 32542562 32542704 -127057079 + ID_B1 SINE B4 78 223 -1 1 833 273 364 85 0 chr3 32542749 32542867 -127056916 - L4 LINE RTE -213 1816 1689 1 833 2903 60 0 11 chr3 32543003 32543374 -127056409 + L1Md_F2 LINE L1 6216 6582 0 1 833 538 290 115 17 chr3 32543719 32543954 -127055829 - RMER15 LTR ERVL -43 532 275 1 833 275 196 0 0 chr3 32544167 32544213 -127055570 + L1MEf LINE L1 960 1005 -5542 1 833 2308 181 34 60 chr3 32544218 32544683 -127055100 + MT2A LTR ERVL 6 458 -75 1 833 315 0 0 0 chr3 32544687 32544722 -127055061 + (CA)n Simple_repeat Simple_repeat 2 36 0 1 833 1612 169 139 35 chr3 32544724 32544888 -127054895 + ORR1D1 LTR MaLR 2 190 -184 1 833 3163 62 7 7 chr3 32544888 32545309 -127054474 - BGLII LTR ERVK 0 421 1 1 833 363 127 0 0 chr3 32545309 32545372 -127054411 + (TG)n Simple_repeat Simple_repeat 2 64 0 1 833 1612 169 139 35 chr3 32545372 32545544 -127054239 + ORR1D1 LTR MaLR 191 373 -1 1 833 237 165 100 9 chr3 32545544 32545620 -127054163 + (TA)n Simple_repeat Simple_repeat 1 82 0 1 833 1328 107 27 0 chr3 32545620 32545807 -127053976 - B2_Mm2 SINE B2 -3 192 1 1 833 237 165 100 9 chr3 32545807 32545840 -127053943 + (TA)n Simple_repeat Simple_repeat 1 38 0 1 833 290 109 0 18 chr3 32545842 32545898 -127053885 + MT2A LTR ERVL 479 533 0 1 833 545 309 53 33 chr3 32545902 32546175 -127053608 + L1MEf LINE L1 1017 1297 -5343 1 833 648 293 62 9 chr3 32546175 32546385 -127053398 + ID_B1 SINE B4 2 222 -2 1 833 545 309 53 33 chr3 32546385 32546412 -127053371 + L1MEf LINE L1 1298 1323 -5317 1 833 235 217 0 0 chr3 32547810 32547856 -127051927 + CT-rich Low_complexity Low_complexity 4 49 0 1 833 2639 148 22 26 chr3 32548081 32548533 -127051250 + RLTR11B LTR ERVK 4 453 0 1 833 30 83 0 0 chr3 32548605 32548677 -127051106 + AT_rich Low_complexity Low_complexity 1 72 0 1 833 198 0 0 0 chr3 32548756 32548778 -127051005 + (TTTG)n Simple_repeat Simple_repeat 1 22 0 1 833 435 289 24 77 chr3 32548779 32548948 -127050835 - RSINE1 SINE B4 -1 164 5 1 833 1138 199 29 0 chr3 32549022 32549228 -127050555 + B3 SINE B2 4 215 -1 1 833 441 0 0 0 chr3 32549231 32549280 -127050503 + (TTA)n Simple_repeat Simple_repeat 3 51 0 1 833 734 221 0 0 chr3 32549280 32549407 -127050376 + B1_Mur4 SINE Alu 3 129 -21 1 833 525 32 0 0 chr3 32549407 32549470 -127050313 + (TC)n Simple_repeat Simple_repeat 1 63 0 1 833 625 293 111 0 chr3 32549493 32549691 -127050092 + ID_B1 SINE B4 1 220 -4 1 833 295 183 293 0 chr3 32550281 32550363 -127049420 - ID_B1 SINE B4 -3 221 116 1 833 1320 88 11 21 chr3 32550624 32550810 -127048973 + B2_Mm1t SINE B2 1 184 -9 1 833 2303 122 91 6 chr3 32550988 32551351 -127048432 + ORR1B1 LTR MaLR 1 394 0 1 833 246 32 0 0 chr3 32552157 32552188 -127047595 + (TG)n Simple_repeat Simple_repeat 2 32 0 1 833 991 106 118 0 chr3 32552188 32552349 -127047434 - B2_Mm2 SINE B2 -15 180 1 1 833 643 216 44 7 chr3 32552500 32552635 -127047148 + B3 SINE B2 16 155 -61 1 833 488 344 88 16 chr3 32552641 32552892 -127046891 + B4A SINE B4 1 269 -23 1 833 369 0 0 0 chr3 32552895 32552936 -127046847 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 833 757 207 21 0 chr3 32553712 32553852 -127045931 - B1_Mur1 SINE Alu -6 143 1 1 833 504 48 0 0 chr3 32553996 32554059 -127045724 + (GGAA)n Simple_repeat Simple_repeat 3 65 0 1 833 667 245 32 0 chr3 32554203 32554358 -127045425 - RSINE1 SINE B4 -4 161 2 1 833 317 359 6 60 chr3 32554363 32554529 -127045254 - HAL1-3A_ME LINE L1 -419 2439 2283 1 833 206 214 273 20 chr3 32554864 32554991 -127044792 + L2c LINE L2 3210 3384 -3 1 833 862 262 20 78 chr3 32555900 32556194 -127043589 + B4 SINE B4 2 278 -14 1 833 252 149 0 0 chr3 32556205 32556252 -127043531 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 833 22 35 0 0 chr3 32556477 32556506 -127043277 + AT_rich Low_complexity Low_complexity 1 29 0 1 833 405 141 0 0 chr3 32556506 32556591 -127043192 + (TG)n Simple_repeat Simple_repeat 2 86 0 1 833 676 227 20 13 chr3 32556605 32556757 -127043026 - B3A SINE B2 -26 172 20 1 833 22 35 0 0 chr3 32556786 32556815 -127042968 + AT_rich Low_complexity Low_complexity 1 29 0 1 833 368 232 99 0 chr3 32556967 32557089 -127042694 + L1MC5 LINE L1 6677 6817 -1065 1 833 692 150 0 8 chr3 32558114 32558223 -127041560 + CT-rich Low_complexity Low_complexity 19 127 0 1 833 1303 14 0 0 chr3 32558223 32558370 -127041413 - B1_Mus2 SINE Alu 0 147 1 1 833 692 150 0 8 chr3 32558370 32558388 -127041395 + polypyrimidine Low_complexity Low_complexity 1 18 0 1 833 579 175 45 45 chr3 32558388 32558412 -127041371 - B1_Mur2 SINE Alu -1 148 125 1 833 2098 138 76 0 chr3 32558412 32558753 -127041030 - ORR1B2 LTR MaLR 0 367 1 1 833 579 175 45 45 chr3 32558753 32558860 -127040923 - B1_Mur2 SINE Alu -25 124 17 1 833 234 224 64 96 chr3 32558778 32558872 -127040911 - MT2B LTR ERVL -344 257 167 1 833 180 111 0 0 chr3 32558889 32558916 -127040867 + (TCCC)n Simple_repeat Simple_repeat 4 30 0 1 833 686 211 183 5 chr3 32558923 32559109 -127040674 - ID_B1 SINE B4 -3 221 3 1 833 531 249 195 35 chr3 32559786 32560073 -127039710 + ORR1E LTR MaLR 6 379 0 1 833 282 206 161 44 chr3 32560106 32560243 -127039540 + ORR1D1 LTR MaLR 25 177 -197 1 833 613 239 42 0 chr3 32560330 32560472 -127039311 + RSINE1 SINE B4 2 149 -16 1 833 22 56 0 0 chr3 32560484 32560520 -127039263 + AT_rich Low_complexity Low_complexity 1 36 0 1 833 21 0 0 0 chr3 32560829 32560850 -127038933 + AT_rich Low_complexity Low_complexity 1 21 0 1 833 2293 153 0 18 chr3 32560878 32561278 -127038505 + MTC LTR MaLR 1 393 -28 1 833 1857 182 174 26 chr3 32561278 32561836 -127037947 + Lx9 LINE L1 6825 7465 -179 1 833 641 45 11 0 chr3 32561836 32561925 -127037858 + (TCTA)n Simple_repeat Simple_repeat 4 93 0 1 833 436 209 45 9 chr3 32561925 32562036 -127037747 + Lx9 LINE L1 7524 7638 -6 1 833 342 0 0 0 chr3 32562526 32562564 -127037219 + (TAAAA)n Simple_repeat Simple_repeat 5 42 0 1 833 1137 88 0 0 chr3 32563014 32563161 -127036622 + B1_Mus2 SINE Alu 1 147 0 1 833 35 0 0 0 chr3 32563981 32564016 -127035767 + AT_rich Low_complexity Low_complexity 1 35 0 1 833 812 177 14 0 chr3 32564242 32564383 -127035400 + B1_Mur3 SINE Alu 7 149 0 1 833 180 0 0 0 chr3 32564383 32564403 -127035380 + (A)n Simple_repeat Simple_repeat 1 20 0 1 833 364 268 12 155 chr3 32564452 32564620 -127035163 + B4 SINE B4 1 144 -148 1 833 709 250 32 11 chr3 32564857 32565043 -127034740 - ID_B1 SINE B4 -8 216 27 1 833 504 225 0 26 chr3 32565103 32565219 -127034564 + PB1 SINE Alu 11 124 -3 1 833 514 241 104 6 chr3 32565416 32565579 -127034204 - B3A SINE B2 -17 181 3 1 833 387 0 0 0 chr3 32566316 32566359 -127033424 + (TTA)n Simple_repeat Simple_repeat 3 45 0 1 833 738 255 40 25 chr3 32566360 32566561 -127033222 - B3 SINE B2 -12 204 1 1 833 301 316 14 68 chr3 32566667 32566813 -127032970 + MLT1B LTR MaLR 248 385 -5 1 833 563 218 0 9 chr3 32566874 32566985 -127032798 + B1_Mur4 SINE Alu 3 112 -38 1 833 213 108 0 0 chr3 32566992 32567029 -127032754 + (CAA)n Simple_repeat Simple_repeat 2 38 0 1 833 23 0 0 0 chr3 32568798 32568821 -127030962 + AT_rich Low_complexity Low_complexity 1 23 0 1 833 572 216 14 21 chr3 32569292 32569434 -127030349 - ID_B1 SINE B4 0 224 84 1 833 526 315 91 0 chr3 32569434 32569653 -127030130 + MLT1A0 LTR MaLR 127 365 0 1 833 275 206 27 27 chr3 32569684 32569759 -127030024 + Charlie5 DNA MER1_type 23 97 -2527 1 833 491 67 0 0 chr3 32569782 32569857 -127029926 - B1_Mus2 SINE Alu 0 147 73 1 833 403 38 0 0 chr3 32569900 32569953 -127029830 + MT2A LTR ERVL 6 58 -475 1 833 219 36 0 0 chr3 32569964 32569992 -127029791 + (CA)n Simple_repeat Simple_repeat 1 28 0 1 833 1294 81 27 0 chr3 32570149 32570335 -127029448 + B2_Mm1t SINE B2 1 191 -2 1 833 446 326 78 7 chr3 32570615 32570757 -127029026 + RSINE1 SINE B4 3 154 -11 1 833 749 204 93 6 chr3 32571136 32571437 -127028346 - MTD LTR MaLR 0 419 6 1 833 1694 220 158 72 chr3 32571443 32572125 -127027658 - MTD-int LTR MaLR 0 1258 518 1 833 1623 167 34 124 chr3 32572170 32572607 -127027176 + MTC-int LTR MaLR 859 1256 -2 1 833 816 208 257 30 chr3 32572678 32572741 -127027042 + MTD LTR MaLR 48 109 -310 1 833 198 0 0 0 chr3 32572741 32572763 -127027020 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 1 833 816 208 257 30 chr3 32572763 32572989 -127026794 + MTD LTR MaLR 110 405 -14 1 833 5097 48 2 8 chr3 32572989 32573621 -127026162 - L1Md_F2 LINE L1 0 6582 5955 1 833 816 208 257 30 chr3 32573621 32573633 -127026150 + MTD LTR MaLR 406 417 -2 1 833 807 263 57 60 chr3 32573635 32574061 -127025722 - MTD-int LTR MaLR -746 512 1 1 833 564 275 78 16 chr3 32574270 32574514 -127025269 + MER2 DNA MER2_type 87 345 0 1 833 32 0 0 0 chr3 32574775 32574807 -127024976 + AT_rich Low_complexity Low_complexity 1 32 0 1 833 1714 262 24 42 chr3 32575088 32575658 -127024125 + RMER1B Other Other 18 525 -541 1 833 4050 185 78 101 chr3 32575659 32576244 -127023539 + RMER1A Other Other 1 495 -535 1 833 2701 66 26 3 chr3 32576244 32576593 -127023190 + IAPEY2_LTR LTR ERVK 1 357 0 2 833 4050 185 78 101 chr3 32576593 32577062 -127022721 + RMER1A Other Other 496 1030 0 1 833 371 239 49 35 chr3 32577083 32577226 -127022557 - L1ME2z LINE L1 -249 6195 6051 2 833 858 244 38 24 chr3 32577230 32577440 -127022343 + B3 SINE B2 4 216 0 2 833 595 206 0 0 chr3 32577478 32577580 -127022203 + B1_Mur1 SINE Alu 21 122 -27 2 833 269 327 73 55 chr3 32577484 32577594 -127022189 + B4 SINE B4 112 223 -69 2 833 262 235 11 0 chr3 32577672 32577741 -127022042 - PB1D7 SINE Alu -49 100 28 2 833 189 74 0 0 chr3 32577957 32577984 -127021799 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 2 833 413 89 159 14 chr3 32577992 32578100 -127021683 - B2_Mm2 SINE B2 -9 186 46 2 833 1244 102 6 6 chr3 32578126 32578303 -127021480 - B2_Mm1t SINE B2 -14 179 3 2 833 266 184 101 10 chr3 32578352 32578451 -127021332 - L1MC LINE L1 -863 5283 5176 2 833 292 271 84 69 chr3 32578629 32578760 -127021023 + B1_Mur2 SINE Alu 6 138 -11 2 833 399 56 0 0 chr3 32578763 32578817 -127020966 + (CAAAA)n Simple_repeat Simple_repeat 2 55 0 2 833 260 258 0 31 chr3 32579760 32579774 -127020009 + (CA)n Simple_repeat Simple_repeat 2 15 0 2 833 297 0 0 0 chr3 32579774 32579807 -127019976 + (TG)n Simple_repeat Simple_repeat 1 33 0 2 833 260 258 0 31 chr3 32579807 32579888 -127019895 + (CA)n Simple_repeat Simple_repeat 2 79 0 2 833 225 217 349 0 chr3 32580917 32581000 -127018783 + RSINE1 SINE B4 12 123 -42 2 833 210 37 0 0 chr3 32581044 32581071 -127018712 + (CA)n Simple_repeat Simple_repeat 1 27 0 2 833 210 37 0 0 chr3 32581071 32581098 -127018685 + (TAA)n Simple_repeat Simple_repeat 1 27 0 2 833 550 204 0 0 chr3 32581196 32581299 -127018484 - RMER1C Other Other -1 1341 1239 2 833 438 20 0 0 chr3 32581325 32581376 -127018407 + (GA)n Simple_repeat Simple_repeat 1 51 0 2 833 252 0 0 0 chr3 32581374 32581402 -127018381 + (GGAA)n Simple_repeat Simple_repeat 4 31 0 2 833 489 205 213 0 chr3 32581402 32581529 -127018254 - RMER1C Other Other -117 1225 1072 2 833 2682 28 2 116 chr3 32581529 32581969 -127017814 - RLTR10 LTR ERVK -7 383 1 2 833 1893 163 59 9 chr3 32581970 32582311 -127017472 - RMER1C Other Other -266 1076 719 2 833 1419 234 58 80 chr3 32582733 32582823 -127016960 - RLTR16 LTR ERVK 0 505 413 2 833 297 0 0 0 chr3 32582823 32582856 -127016927 + (CA)n Simple_repeat Simple_repeat 2 34 0 2 833 1419 234 58 80 chr3 32582856 32583281 -127016502 - RLTR16 LTR ERVK -93 412 1 2 833 969 241 18 27 chr3 32583302 32583524 -127016259 + ID_B1 SINE B4 5 224 0 2 833 391 35 35 0 chr3 32584255 32584312 -127015471 + (TG)n Simple_repeat Simple_repeat 2 60 0 2 833 514 267 99 52 chr3 32584689 32584902 -127014881 + B4A SINE B4 9 231 -61 2 833 228 35 0 0 chr3 32585058 32585087 -127014696 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 2 833 278 305 101 65 chr3 32585161 32585378 -127014405 + MLT1B LTR MaLR 3 227 -163 2 833 2011 142 19 68 chr3 32585378 32585807 -127013976 + RMER17C LTR ERVK 1 408 -2 2 833 1281 192 55 93 chr3 32585819 32586204 -127013579 - RLTR9C LTR ERVK 0 393 24 2 833 6574 200 151 29 chr3 32586353 32587374 -127012409 + Lx7 LINE L1 5819 6886 -810 2 833 405 0 0 0 chr3 32587374 32587419 -127012364 + (GA)n Simple_repeat Simple_repeat 2 46 0 2 833 6574 201 169 22 chr3 32587419 32588035 -127011748 + Lx7 LINE L1 6887 7659 -37 2 833 292 335 17 80 chr3 32588195 32588370 -127011413 - RMER4A LTR ERVK -278 188 25 2 833 961 126 14 0 chr3 32589018 32589161 -127010622 - B1_Mus2 SINE Alu 0 147 3 2 833 855 111 84 7 chr3 32589187 32589341 -127010442 - B2_Mm2 SINE B2 -21 174 9 2 833 831 158 20 14 chr3 32590025 32590173 -127009610 + B1_Mur4 SINE Alu 1 149 -1 2 833 426 183 54 0 chr3 32591540 32591633 -127008150 + MTC LTR MaLR 324 421 0 2 833 473 210 117 8 chr3 32591900 32592020 -127007763 - ID_B1 SINE B4 -2 222 90 2 833 290 267 100 0 chr3 32592317 32592407 -127007376 - B3A SINE B2 -98 100 2 2 833 480 324 22 0 chr3 32592555 32592691 -127007092 + ID_B1 SINE B4 72 210 -14 2 833 212 94 75 0 chr3 32592725 32592778 -127007005 + (CA)n Simple_repeat Simple_repeat 2 58 0 2 833 188 35 35 0 chr3 32592830 32592859 -127006924 + (CA)n Simple_repeat Simple_repeat 1 30 0 2 833 297 0 0 0 chr3 32593566 32593599 -127006184 + (TG)n Simple_repeat Simple_repeat 2 34 0 2 833 698 43 0 21 chr3 32593613 32593708 -127006075 + (TCTCCC)n Simple_repeat Simple_repeat 3 95 0 2 833 536 273 116 28 chr3 32594048 32594229 -127005554 + B3A SINE B2 2 198 0 2 833 545 245 121 29 chr3 32594294 32594500 -127005283 + MLT1B LTR MaLR 32 256 -134 2 833 1190 209 46 132 chr3 32594581 32594951 -127004832 + ORR1C2 LTR MaLR 1 338 -46 2 833 1321 208 11 116 chr3 32594941 32595171 -127004612 - MTD LTR MaLR -80 339 122 2 833 995 116 0 0 chr3 32595171 32595309 -127004474 + B1_Mus1 SINE Alu 2 139 -9 2 833 1321 208 11 116 chr3 32595309 32595431 -127004352 - MTD LTR MaLR -298 121 24 2 833 198 0 0 0 chr3 32595448 32595470 -127004313 + (CAA)n Simple_repeat Simple_repeat 2 23 0 2 833 2035 142 67 32 chr3 32596523 32596894 -127002889 - ORR1C2 LTR MaLR 0 384 1 2 833 23 33 0 0 chr3 32597851 32597881 -127001902 + AT_rich Low_complexity Low_complexity 1 30 0 2 833 774 259 44 0 chr3 32597909 32598114 -127001669 - B3 SINE B2 -2 214 1 2 833 738 183 28 0 chr3 32598153 32598295 -127001488 + B1_Mus1 SINE Alu 1 146 -2 2 833 237 132 0 0 chr3 32598295 32598333 -127001450 + (CCAA)n Simple_repeat Simple_repeat 1 38 0 2 833 780 276 5 15 chr3 32598507 32598702 -127001081 + ID_B1 SINE B4 28 220 -4 2 833 2510 136 7 19 chr3 32598720 32599134 -127000649 - RLTR9E LTR ERVK 0 409 1 2 833 523 109 8 12 chr3 32599134 32599220 -127000563 - ETnERV2-int LTR ERVK -1 7405 7331 2 833 18800 94 21 31 chr3 32599422 32601870 -126997913 - ETnERV2-int LTR ERVK -981 6425 4071 2 833 1229 41 0 0 chr3 32601870 32602017 -126997766 - B1_Mm SINE Alu 0 147 1 2 833 18800 104 25 48 chr3 32602017 32602934 -126996849 - ETnERV2-int LTR ERVK -2648 4596 3636 2 833 726 245 0 37 chr3 32602929 32603090 -126996693 - ETnERV2-int LTR ERVK -4798 2608 2454 2 833 1533 57 10 5 chr3 32603134 32603328 -126996455 - B2_Mm2 SINE B2 0 195 1 2 833 610 157 29 0 chr3 32603330 32603432 -126996351 - RMER16-int LTR ERVK -4213 1193 1089 2 833 285 186 67 17 chr3 32603437 32603497 -126996286 - RMER16-int LTR ERVK -4587 819 757 2 833 323 83 0 0 chr3 32603507 32603555 -126996228 - RMER16-int LTR ERVK -5218 188 141 2 833 370 169 0 15 chr3 32603997 32604063 -126995720 - ETnERV2-int LTR ERVK -5089 2155 2091 2 833 1388 56 79 0 chr3 32604115 32604293 -126995490 - B2_Mm1t SINE B2 0 193 2 2 833 920 200 15 89 chr3 32604298 32604567 -126995216 - MMETn-int LTR ERVK -4594 250 2 2 833 2418 128 30 25 chr3 32604569 32604976 -126994807 - RLTR9E LTR ERVK 0 409 1 2 833 1403 99 0 5 chr3 32605369 32605562 -126994221 - B2_Mm2 SINE B2 -3 192 1 2 833 838 171 0 73 chr3 32605795 32605946 -126993837 - B1_Mur1 SINE Alu -9 140 1 2 833 454 275 9 0 chr3 32606300 32606409 -126993374 + PB1D10 SINE Alu 8 117 0 2 833 206 309 0 0 chr3 32607432 32607500 -126992283 + C-rich Low_complexity Low_complexity 1 68 0 2 833 325 209 150 44 chr3 32608738 32608898 -126990885 - MIR SINE MIR -5 257 81 2 833 1458 187 58 63 chr3 32608898 32609263 -126990520 - ORR1D2 LTR MaLR 0 370 8 2 833 378 259 83 0 chr3 32610413 32610521 -126989262 + PB1D9 SINE Alu 2 118 -2 2 833 677 169 30 8 chr3 32610612 32610743 -126989040 - B1_Mur3 SINE Alu -1 148 15 2 833 349 257 37 65 chr3 32610657 32610765 -126989018 - MT2B LTR ERVL -344 257 153 2 833 446 280 92 15 chr3 32612100 32612296 -126987487 - MER68 LTR ERVL -183 380 170 2 833 484 274 0 57 chr3 32612862 32612986 -126986797 - PB1D9 SINE Alu -3 117 1 2 833 514 222 40 40 chr3 32613684 32613834 -126985949 - RSINE1 SINE B4 -13 152 3 2 833 920 285 92 15 chr3 32614964 32615450 -126984333 - L1_Rod LINE L1 -573 5727 5139 2 833 307 229 147 74 chr3 32616017 32616384 -126983399 + RMER1C Other Other 384 777 -565 2 833 774 156 36 15 chr3 32618289 32618426 -126981357 + B1_Mus1 SINE Alu 3 142 -6 2 833 253 0 26 26 chr3 32618429 32618467 -126981316 + (TAGA)n Simple_repeat Simple_repeat 1 38 0 2 833 1169 63 0 0 chr3 32620461 32620603 -126979180 - B1_Mus1 SINE Alu -6 142 1 2 833 1236 87 34 17 chr3 32620933 32621109 -126978674 + B2_Mm1t SINE B2 1 179 -14 2 833 354 143 14 0 chr3 32621140 32621205 -126978578 + B2_Mm2 SINE B2 46 116 -82 2 833 626 268 45 13 chr3 32621279 32621434 -126978349 + RSINE1 SINE B4 4 163 -2 2 833 252 175 63 0 chr3 32621830 32621893 -126977890 - B4A SINE B4 -8 284 218 2 833 225 305 0 0 chr3 32621893 32621952 -126977831 + (CA)n Simple_repeat Simple_repeat 2 60 0 2 833 558 151 261 153 chr3 32622174 32622288 -126977495 - URR1A DNA MER1_type -1 225 114 2 833 1172 15 15 0 chr3 32622288 32622425 -126977358 - B1_Mus1 SINE Alu -9 139 1 2 833 558 151 261 153 chr3 32622425 32622513 -126977270 - URR1A DNA MER1_type -113 113 1 2 833 293 211 172 7 chr3 32622644 32622785 -126976998 + B3 SINE B2 31 215 -1 2 833 359 226 48 10 chr3 32623074 32623177 -126976606 + PB1D10 SINE Alu 3 109 -40 2 833 247 237 56 102 chr3 32623188 32623296 -126976487 - PB1D10 SINE Alu 0 117 15 2 833 557 230 18 0 chr3 32623971 32624084 -126975699 - B1_Mur1 SINE Alu -29 120 6 2 833 310 240 35 96 chr3 32623984 32624099 -126975684 - MT2B LTR ERVL -341 260 153 2 833 286 238 75 0 chr3 32624771 32624851 -126974932 - PB1D7 SINE Alu -34 86 1 2 833 711 225 97 21 chr3 32626007 32626193 -126973590 - B3 SINE B2 -12 204 5 2 833 575 120 30 0 chr3 32626761 32626861 -126972922 + B2_Mm2 SINE B2 87 189 -6 2 833 992 94 29 14 chr3 32627759 32627899 -126971884 - B1_Mur4 SINE Alu -8 142 1 2 833 288 0 0 0 chr3 32627910 32627942 -126971841 + (T)n Simple_repeat Simple_repeat 1 32 0 2 833 1291 20 0 0 chr3 32627942 32628089 -126971694 - B1_Mus2 SINE Alu 0 147 1 2 833 207 0 0 0 chr3 32628714 32628737 -126971046 + (T)n Simple_repeat Simple_repeat 1 23 0 2 833 1263 34 0 0 chr3 32628737 32628884 -126970899 - B1_Mm SINE Alu 0 147 1 2 833 225 0 0 0 chr3 32631606 32631631 -126968152 + (T)n Simple_repeat Simple_repeat 1 25 0 2 833 954 68 121 0 chr3 32631631 32631763 -126968020 - B1_Mus1 SINE Alu 0 148 1 3 833 33 0 0 0 chr3 32632805 32632838 -126966945 + AT_rich Low_complexity Low_complexity 1 33 0 3 833 299 229 79 67 chr3 32633402 32633491 -126966292 - RSINE1 SINE B4 0 165 76 3 833 288 300 0 23 chr3 32633669 32633773 -126966010 - RSINE1 SINE B4 -191 101 1 3 833 364 220 62 3 chr3 32634189 32634277 -126965506 - ID4_ SINE ID -62 90 1 3 833 231 36 0 0 chr3 32634303 32634331 -126965452 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 3 833 267 31 0 0 chr3 32634873 32634905 -126964878 + (CA)n Simple_repeat Simple_repeat 2 33 0 3 833 413 202 60 0 chr3 32634933 32635017 -126964766 - B3 SINE B2 -11 205 117 3 104 1143 130 27 0 chr3 32636787 32636971 -126962812 + URR1B DNA MER1_type 37 225 0 3 834 239 312 0 0 chr3 32637585 32637649 -126962134 + MIR SINE MIR 32 95 -167 3 834 546 281 31 0 chr3 32638543 32638671 -126961112 - RSINE1 SINE B4 -31 134 3 3 834 581 211 157 6 chr3 32638941 32639113 -126960670 + B3A SINE B2 1 198 0 3 834 262 257 14 0 chr3 32639417 32639487 -126960296 - PB1D9 SINE Alu -19 101 31 3 834 396 232 132 31 chr3 32640025 32640154 -126959629 - B1F2 SINE Alu -3 146 5 3 834 626 211 22 8 chr3 32640509 32640643 -126959140 + B3 SINE B2 70 205 -11 3 834 272 247 91 0 chr3 32640900 32640977 -126958806 - ID_B1 SINE B4 -20 204 121 3 834 1835 115 98 13 chr3 32641163 32641479 -126958304 - ORR1B2 LTR MaLR -12 355 13 3 834 2152 150 104 10 chr3 32641563 32641948 -126957835 - MTC LTR MaLR 0 421 1 3 834 364 280 179 7 chr3 32642462 32642613 -126957170 + MER2 DNA MER2_type 2 178 -167 3 834 189 195 0 0 chr3 32643130 32643171 -126956612 + GA-rich Low_complexity Low_complexity 1 41 0 3 834 319 269 5 79 chr3 32644646 32644836 -126954947 + C-rich Low_complexity Low_complexity 2 177 0 3 834 189 0 0 0 chr3 32644868 32644889 -126954894 + (TTTTTG)n Simple_repeat Simple_repeat 4 24 0 3 834 577 248 0 21 chr3 32644889 32645029 -126954754 - ID_B1 SINE B4 0 224 88 3 834 1614 152 139 51 chr3 32645815 32646168 -126953615 - ORR1C2 LTR MaLR 0 384 1 3 834 221 192 19 0 chr3 32646243 32646295 -126953488 + (CAGA)n Simple_repeat Simple_repeat 2 54 0 3 834 695 239 58 39 chr3 32646856 32647061 -126952722 - B3 SINE B2 -4 212 4 3 834 392 226 222 34 chr3 32647667 32647821 -126951962 - B3A SINE B2 -12 186 2 3 834 766 186 134 109 chr3 32648153 32648436 -126951347 - B4 SINE B4 0 292 3 3 834 180 0 0 0 chr3 32648491 32648511 -126951272 + (ATTG)n Simple_repeat Simple_repeat 1 20 0 3 834 634 181 213 38 chr3 32649621 32649902 -126949881 - L1MA8 LINE L1 -428 5872 5558 3 834 229 200 50 0 chr3 32650661 32650721 -126949062 - tRNA-Ala-GCY_ tRNA tRNA -7 68 6 3 834 266 284 198 13 chr3 32651346 32651503 -126948280 + RMER20B LTR ERVK 234 419 -208 3 834 366 242 65 11 chr3 32651795 32651887 -126947896 + RMER20B LTR ERVK 504 600 -27 3 834 438 20 0 0 chr3 32652486 32652537 -126947246 + (CA)n Simple_repeat Simple_repeat 2 52 0 3 834 250 242 16 0 chr3 32652765 32652827 -126946956 + tRNA-Ala-GCY_ tRNA tRNA 6 68 -7 3 834 481 198 35 73 chr3 32652978 32653116 -126946667 + B4A SINE B4 90 224 -68 3 834 225 65 0 0 chr3 32653178 32653209 -126946574 + (CAGA)n Simple_repeat Simple_repeat 2 32 0 3 834 226 281 53 0 chr3 32653247 32653304 -126946479 + RSINE1 SINE B4 83 142 -23 3 834 225 0 0 0 chr3 32653312 32653337 -126946446 + (CA)n Simple_repeat Simple_repeat 2 26 0 3 834 570 93 0 0 chr3 32653337 32653423 -126946360 + (GA)n Simple_repeat Simple_repeat 1 86 0 3 834 841 59 25 0 chr3 32654321 32654439 -126945344 + B2_Mm2 SINE B2 1 121 -74 3 834 207 88 0 0 chr3 32654439 32654473 -126945310 + (A)n Simple_repeat Simple_repeat 1 34 0 3 834 949 221 99 131 chr3 32654695 32655069 -126944714 + RLTR18B LTR ERVK 151 512 0 3 834 501 180 30 0 chr3 32655276 32655376 -126944407 + B1_Mus1 SINE Alu 40 142 -6 3 834 267 140 0 0 chr3 32655376 32655426 -126944357 + (G)n Simple_repeat Simple_repeat 1 50 0 3 834 538 161 42 35 chr3 32655548 32655690 -126944093 + RLTR22_Mur LTR ERVK 1706 1848 0 3 834 2888 37 20 3 chr3 32655724 32656077 -126943706 + L1_Mus1 LINE L1 6209 6567 0 3 834 447 258 54 72 chr3 32656200 32656367 -126943416 + RSINE1 SINE B4 2 165 0 3 834 195 246 0 0 chr3 32656368 32656425 -126943358 + (CA)n Simple_repeat Simple_repeat 2 58 0 3 834 393 241 143 9 chr3 32656458 32656571 -126943212 + L1M2 LINE L1 2616 2728 -3415 3 834 309 26 0 0 chr3 32656571 32656609 -126943174 + (TG)n Simple_repeat Simple_repeat 1 38 0 3 834 393 235 162 6 chr3 32656609 32656676 -126943107 + L1M2 LINE L1 2729 2818 -3325 3 834 509 182 71 18 chr3 32656697 32656809 -126942974 - B1_Mur2 SINE Alu 0 149 32 3 834 2314 117 3 3 chr3 32656875 32657202 -126942581 + ORR1A2 LTR MaLR 1 327 0 3 834 891 226 5 34 chr3 32657215 32657316 -126942467 + L1_Mur3 LINE L1 1687 1787 -4093 3 834 2596 145 39 9 chr3 32657316 32657755 -126942028 - RLTR11B LTR ERVK 0 453 2 3 834 891 226 5 34 chr3 32657755 32657859 -126941924 + L1_Mur3 LINE L1 1788 1886 -3994 3 834 998 137 56 0 chr3 32657853 32658014 -126941769 + L1_Mur3 LINE L1 2606 2775 -3105 3 834 10519 188 47 45 chr3 32658014 32658378 -126941405 + L1_Mur3 LINE L1 2622 3000 -2880 3 834 482 200 135 78 chr3 32658378 32658519 -126941264 + B1_Mur2 SINE Alu 1 149 0 3 834 10519 188 47 45 chr3 32658519 32660618 -126939165 + L1_Mur3 LINE L1 3001 5088 -792 3 834 649 242 13 0 chr3 32661070 32661223 -126938560 + L1_Mur3 LINE L1 5083 5237 -643 3 834 1884 230 17 52 chr3 32661250 32661709 -126938074 + Lx7 LINE L1 6730 7172 -524 3 834 421 285 140 41 chr3 32661732 32662175 -126937608 - RLTR12B LTR ERVK -41 487 1 3 834 502 290 61 6 chr3 32662175 32662338 -126937445 + Lx7 LINE L1 7167 7338 -358 3 834 229 273 64 32 chr3 32662378 32662503 -126937280 + Lx6 LINE L1 7313 7441 -19 3 834 1342 93 11 0 chr3 32662505 32662687 -126937096 - B2_Mm1t SINE B2 -9 184 1 3 834 646 286 68 0 chr3 32662698 32662890 -126936893 - Lx6 LINE L1 -30 7430 7226 3 834 1110 169 118 185 chr3 32663233 32663442 -126936341 + RMER17C-int LTR ERVK 2403 2591 -647 3 834 277 154 0 55 chr3 32663442 32663497 -126936286 - LSU-rRNA_Hsa rRNA rRNA -782 4253 4202 3 834 1110 169 118 185 chr3 32663497 32663673 -126936110 + RMER17C-int LTR ERVK 2592 2751 -487 3 834 2915 74 48 0 chr3 32663673 32664065 -126935718 - RLTR10A LTR ERVK 0 411 1 3 834 1110 211 352 60 chr3 32664065 32664446 -126935337 + RMER17C-int LTR ERVK 2752 3238 0 3 834 337 245 58 120 chr3 32664592 32664833 -126934950 + RMER17C LTR ERVK 130 355 -55 3 834 3720 224 70 61 chr3 32664856 32666446 -126933337 - Lx5 LINE L1 -206 6844 5284 3 834 854 146 7 0 chr3 32666464 32666601 -126933182 - B1_Mus1 SINE Alu -9 139 2 3 834 2935 194 163 25 chr3 32666607 32667153 -126932630 - Lx5 LINE L1 -1732 4148 3474 3 834 788 30 0 10 chr3 32667153 32667253 -126932530 + (GGAGA)n Simple_repeat Simple_repeat 1 99 0 3 834 2935 194 163 25 chr3 32667253 32667721 -126932062 - Lx5 LINE L1 -2407 3473 2994 3 834 2193 189 94 8 chr3 32667731 32668200 -126931583 - Lx5 LINE L1 0 7050 6542 3 834 6788 161 50 16 chr3 32668188 32669071 -126930712 - Lx5 LINE L1 -2902 2975 2056 3 834 276 30 0 0 chr3 32669071 32669104 -126930679 + (TG)n Simple_repeat Simple_repeat 1 33 0 3 834 6788 161 50 16 chr3 32669104 32669571 -126930212 - Lx5 LINE L1 -3822 2055 1580 3 834 1353 193 77 8 chr3 32669571 32669832 -126929951 + RodERV21-int LTR ERV1 1855 2133 -2858 3 834 7292 121 17 17 chr3 32670592 32671826 -126927957 + IAPEz-int LTR ERVK 5525 7329 -351 3 834 1991 74 30 23 chr3 32671826 32672131 -126927652 + IAPLTR2b LTR ERVK 1 307 -20 3 834 2852 195 27 42 chr3 32672474 32673064 -126926719 + RodERV21-int LTR ERV1 2105 2685 -2306 3 834 1028 165 96 20 chr3 32673441 32673639 -126926144 + RLTR42-int LTR ERVK 1105 1317 -4205 3 834 495 0 0 0 chr3 32673642 32673697 -126926086 + (CAAAA)n Simple_repeat Simple_repeat 1 55 0 3 834 256 179 0 116 chr3 32673866 32673961 -126925822 + RLTR19-int LTR ERVK 3461 3544 -2593 3 834 6872 176 96 8 chr3 32673954 32675284 -126924499 + RodERV21-int LTR ERV1 3226 4673 -318 3 834 22 35 0 0 chr3 32675459 32675488 -126924295 + AT_rich Low_complexity Low_complexity 1 29 0 3 834 25 75 0 0 chr3 32675632 32675685 -126924098 + AT_rich Low_complexity Low_complexity 1 53 0 3 834 306 303 0 0 chr3 32676364 32676453 -126923330 + PB1D10 SINE Alu 27 115 -2 3 834 6015 71 29 28 chr3 32676597 32677294 -126922489 - L1VL2 LINE L1 -1789 1826 1124 3 834 1430 89 16 0 chr3 32677294 32677485 -126922298 - B2_Mm2 SINE B2 0 195 2 3 834 6015 78 92 35 chr3 32677485 32678373 -126921410 - L1VL2 LINE L1 -2492 1123 179 3 834 1007 175 11 5 chr3 32678377 32678561 -126921222 + RodERV21-int LTR ERV1 4641 4825 -166 3 834 345 252 50 0 chr3 32678563 32678662 -126921121 + RMER4B LTR ERVK 346 449 -136 3 834 216 0 0 0 chr3 32678786 32678810 -126920973 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 3 834 460 249 200 26 chr3 32678810 32679000 -126920783 + RMER21B LTR ERV1 345 567 -275 3 834 246 254 48 0 chr3 32679048 32679111 -126920672 - MusHAL1 LINE L1 -1067 1645 1580 3 834 1248 188 147 32 chr3 32679111 32679485 -126920298 - RMER21B LTR ERV1 -356 486 70 3 834 6741 156 35 28 chr3 32679522 32680878 -126918905 - L1_Mur2 LINE L1 -3333 2547 1201 3 834 189 0 0 0 chr3 32680878 32680899 -126918884 + (TG)n Simple_repeat Simple_repeat 2 22 0 3 834 1610 156 113 39 chr3 32680899 32681214 -126918569 - L1_Mur2 LINE L1 -6528 1200 893 3 834 2256 171 115 113 chr3 32681645 32682056 -126917727 + RMER19B LTR ERVK 1 375 -527 3 834 2384 109 34 32 chr3 32682056 32682464 -126917319 + RLTR9E LTR ERVK 1 409 0 3 834 2256 171 115 113 chr3 32682464 32682595 -126917188 + RMER19B LTR ERVK 376 496 -406 3 834 540 0 0 0 chr3 32682595 32682655 -126917128 + (GA)n Simple_repeat Simple_repeat 1 60 0 3 834 2256 171 115 113 chr3 32682655 32682739 -126917044 + RMER19B LTR ERVK 497 629 -273 3 834 392 224 31 0 chr3 32683305 32683403 -126916380 + L1_Rod LINE L1 5677 5777 -70 3 834 35862 58 2 10 chr3 32683413 32687039 -126912744 - L1Md_F2 LINE L1 0 6582 2965 3 834 1233 27 0 7 chr3 32687039 32687186 -126912597 + B1_Mus2 SINE Alu 2 147 0 3 834 35862 62 1 9 chr3 32687186 32689625 -126910158 - L1Md_F2 LINE L1 -2919 2964 570 3 834 1017 202 206 13 chr3 32689628 32689934 -126909849 - ORR1D1 LTR MaLR -7 367 3 3 834 5474 209 51 39 chr3 32689941 32691282 -126908501 - ORR1D1-int LTR MaLR -13 1357 1 3 834 881 233 155 42 chr3 32691282 32691473 -126908310 - ORR1D1 LTR MaLR 0 374 152 3 834 2561 77 14 6 chr3 32691473 32691826 -126907957 + L1_Mus2 LINE L1 6210 6565 -1 3 834 881 233 155 42 chr3 32691826 32691970 -126907813 - ORR1D1 LTR MaLR -223 151 1 3 834 455 235 43 0 chr3 32691973 32692088 -126907695 + Lx8 LINE L1 5806 5925 -1771 3 834 1949 257 144 30 chr3 32692089 32692860 -126906923 + RMER13A LTR ERVK 2 860 0 3 834 692 357 89 48 chr3 32692917 32693093 -126906690 + Lx8 LINE L1 5977 6173 -1523 3 834 467 17 17 0 chr3 32693093 32693153 -126906630 + (CA)n Simple_repeat Simple_repeat 2 62 0 3 834 1558 292 15 29 chr3 32693153 32693641 -126906142 + Lx8 LINE L1 6174 6678 -795 3 834 23 0 0 0 chr3 32694021 32694044 -126905739 + AT_rich Low_complexity Low_complexity 1 23 0 3 834 231 321 40 74 chr3 32694146 32694294 -126905489 - MLT1I LTR MaLR -26 385 243 3 834 370 121 17 0 chr3 32694488 32694546 -126905237 - B1_Mur2 SINE Alu -5 144 86 3 834 1705 197 109 3 chr3 32694546 32694922 -126904861 + MTD LTR MaLR 1 416 -3 3 834 609 252 14 0 chr3 32695147 32695286 -126904497 + B1_Mur1 SINE Alu 1 141 -8 4 834 414 0 0 0 chr3 32695311 32695357 -126904426 + (TC)n Simple_repeat Simple_repeat 2 47 0 4 834 339 78 0 0 chr3 32695357 32695407 -126904376 + (TG)n Simple_repeat Simple_repeat 2 52 0 4 834 579 152 29 0 chr3 32695462 32695567 -126904216 - ORR1D1 LTR MaLR 0 374 267 4 834 686 189 8 0 chr3 32695576 32695708 -126904075 - ORR1D1 LTR MaLR -241 133 1 4 834 525 279 7 35 chr3 32695708 32695849 -126903934 - RSINE1 SINE B4 -25 140 4 4 834 226 167 56 0 chr3 32696353 32696407 -126903376 - MLT1D LTR MaLR -3 502 446 4 834 1686 120 12 58 chr3 32697134 32697461 -126902322 + RLTRETN_Mm LTR ERVK 11 322 0 4 834 255 244 0 0 chr3 32698300 32698345 -126901438 + B1F2 SINE Alu 1 45 -104 4 834 207 0 0 0 chr3 32698365 32698388 -126901395 + (TG)n Simple_repeat Simple_repeat 1 23 0 4 834 609 97 0 0 chr3 32698388 32698491 -126901292 + (GA)n Simple_repeat Simple_repeat 2 104 0 4 834 914 153 6 6 chr3 32699354 32699512 -126900271 + RLTR13D1 LTR ERVK 1 158 -735 4 834 2327 101 29 72 chr3 32699512 32699886 -126899897 + RLTR10D LTR ERVK 2 359 0 4 834 5784 50 36 3 chr3 32699886 32700609 -126899174 + IAP-d-int LTR ERVK 1 747 -5795 4 834 23021 52 12 16 chr3 32700668 32703514 -126896269 + IAP-d-int LTR ERVK 3188 6021 -521 4 834 3576 53 0 0 chr3 32703517 32703932 -126895851 + IAP-d-int LTR ERVK 6128 6542 0 4 834 2216 109 32 80 chr3 32703932 32704309 -126895474 + RLTR10D LTR ERVK 1 359 0 4 834 2372 153 184 32 chr3 32704309 32705080 -126894703 + RLTR13D1 LTR ERVK 151 1023 0 4 834 3484 133 28 20 chr3 32705292 32705898 -126893885 - RMER6A LTR ERVK 0 756 142 4 834 4884 91 50 9 chr3 32705898 32706585 -126893198 - RLTR19B LTR ERVK 0 715 1 4 834 3484 151 59 7 chr3 32706585 32706689 -126893094 - RMER6A LTR ERVK -615 141 1 4 834 1400 79 26 0 chr3 32707228 32707417 -126892366 - B2_Mm2 SINE B2 0 195 2 4 834 297 294 90 18 chr3 32707554 32707665 -126892118 - MER58B DNA MER1_type 0 341 223 4 834 561 297 82 88 chr3 32707736 32708065 -126891718 - MTEa LTR MaLR -2 377 51 4 834 335 270 0 75 chr3 32708077 32708197 -126891586 + PB1D7 SINE Alu 10 120 0 4 834 447 68 0 0 chr3 32708674 32708733 -126891050 + (TTCC)n Simple_repeat Simple_repeat 3 61 0 4 834 1192 168 5 14 chr3 32708888 32709111 -126890672 + MTD LTR MaLR 1 221 -198 4 834 1339 203 33 13 chr3 32709120 32709419 -126890364 - RMER15 LTR ERVL -14 561 257 4 834 3589 168 77 14 chr3 32709420 32710054 -126889729 - Lx6 LINE L1 -4 7456 6783 4 834 579 207 25 0 chr3 32710054 32710175 -126889608 - RMER15 LTR ERVL -287 288 165 4 834 1916 142 103 15 chr3 32710176 32710650 -126889133 + RMER20A LTR ERVK 1 516 0 4 834 710 209 57 0 chr3 32710651 32710809 -126888974 - RMER15 LTR ERVL -408 167 1 4 834 318 185 0 0 chr3 32710812 32710866 -126888917 + MTD LTR MaLR 221 274 -145 4 834 207 69 0 0 chr3 32710894 32710923 -126888860 + (TTG)n Simple_repeat Simple_repeat 2 30 0 4 834 2731 268 75 1 chr3 32710973 32711708 -126888075 - Lx8 LINE L1 -333 7140 6352 4 834 221 347 0 0 chr3 32711740 32711812 -126887971 - B4A SINE B4 -219 73 2 4 834 549 249 42 99 chr3 32712487 32712679 -126887104 - B3A SINE B2 -3 195 15 4 834 894 88 0 0 chr3 32713166 32713291 -126886492 + (TTCC)n Simple_repeat Simple_repeat 3 127 0 4 834 327 333 10 0 chr3 32713304 32713403 -126886380 - PB1 SINE Alu -26 101 2 4 834 202 228 53 0 chr3 32713827 32713884 -126885899 + (TATATG)n Simple_repeat Simple_repeat 4 63 0 4 834 418 264 84 15 chr3 32714026 32714157 -126885626 - B1F SINE Alu -1 148 9 4 834 497 296 14 14 chr3 32714298 32714445 -126885338 - RSINE1 SINE B4 -6 159 13 4 834 279 256 0 13 chr3 32714486 32714565 -126885218 + PB1D10 SINE Alu 14 91 -26 4 834 23 33 0 0 chr3 32715826 32715856 -126883927 + AT_rich Low_complexity Low_complexity 1 30 0 4 834 23 0 0 0 chr3 32716496 32716519 -126883264 + GC_rich Low_complexity Low_complexity 1 23 0 4 834 557 28 14 0 chr3 32717158 32717229 -126882554 + (TC)n Simple_repeat Simple_repeat 1 72 0 4 834 252 0 0 0 chr3 32717238 32717266 -126882517 + (T)n Simple_repeat Simple_repeat 1 28 0 4 834 200 114 0 28 chr3 32717866 32717902 -126881881 + (TTTTC)n Simple_repeat Simple_repeat 5 39 0 4 834 3340 43 5 2 chr3 32718326 32718721 -126881062 + MTA_Mm LTR MaLR 1 396 0 4 834 315 0 0 0 chr3 32719084 32719119 -126880664 + (T)n Simple_repeat Simple_repeat 1 35 0 4 834 249 256 49 37 chr3 32719614 32719695 -126880088 - ORR1E LTR MaLR -221 138 57 4 834 197 182 18 0 chr3 32719814 32719869 -126879914 + (TA)n Simple_repeat Simple_repeat 2 57 0 4 834 260 260 0 0 chr3 32719993 32720043 -126879740 - ID4_ SINE ID -28 55 6 4 834 269 314 43 36 chr3 32720077 32720216 -126879567 - B1F1 SINE Alu -9 140 1 4 834 23 33 0 0 chr3 32720224 32720254 -126879529 + AT_rich Low_complexity Low_complexity 1 30 0 4 834 288 0 0 0 chr3 32720262 32720294 -126879489 + (TG)n Simple_repeat Simple_repeat 1 32 0 4 834 276 30 0 0 chr3 32720294 32720326 -126879457 + (GA)n Simple_repeat Simple_repeat 1 33 0 4 834 717 260 147 60 chr3 32721278 32721626 -126878157 - MTE2b LTR MaLR 0 379 2 4 834 1080 213 120 12 chr3 32722346 32722588 -126877195 + B4A SINE B4 4 271 -21 4 834 808 253 20 64 chr3 32723562 32723765 -126876018 + ID_B1 SINE B4 14 207 -17 4 834 661 284 30 23 chr3 32724240 32724450 -126875333 + ID_B1 SINE B4 8 224 -68 4 834 182 267 65 26 chr3 32725870 32725947 -126873836 + MIR SINE MIR 34 113 -95 4 834 2081 130 38 57 chr3 32726037 32726405 -126873378 - ORR1C1 LTR MaLR 0 378 18 4 834 1154 70 0 0 chr3 32726415 32726557 -126873226 - B1_Mus2 SINE Alu -2 145 4 4 834 251 33 0 0 chr3 32726558 32726588 -126873195 - ORR1C1 LTR MaLR -353 31 2 4 834 363 44 0 0 chr3 32726607 32726652 -126873131 + (TG)n Simple_repeat Simple_repeat 1 45 0 4 834 277 235 191 36 chr3 32726957 32727041 -126872742 + B4 SINE B4 1 97 -195 4 834 631 287 91 46 chr3 32727058 32727299 -126872484 + B4 SINE B4 41 292 0 4 834 2547 285 104 30 chr3 32727300 32727723 -126872060 + Lx8 LINE L1 5722 6165 -1308 4 834 513 0 0 0 chr3 32727723 32727780 -126872003 + (TC)n Simple_repeat Simple_repeat 2 58 0 4 834 2547 313 139 21 chr3 32727780 32728926 -126870857 + Lx8 LINE L1 6166 7471 -2 4 834 28 29 0 0 chr3 32728926 32728961 -126870822 + AT_rich Low_complexity Low_complexity 1 35 0 4 834 181 342 112 5 chr3 32729307 32729504 -126870279 + L2 LINE L2 2792 3009 -410 4 834 399 248 58 33 chr3 32729506 32729627 -126870156 - ID_B1 SINE B4 -3 221 98 4 834 259 215 70 81 chr3 32729552 32729638 -126870145 - B1_Mus1 SINE Alu -56 92 8 4 834 483 63 0 0 chr3 32729747 32729810 -126869973 + (TG)n Simple_repeat Simple_repeat 1 63 0 4 834 694 252 51 38 chr3 32729811 32729968 -126869815 - B3A SINE B2 -39 159 1 4 834 1014 284 16 44 chr3 32730034 32730284 -126869499 + B4 SINE B4 50 292 0 4 834 545 237 0 9 chr3 32730457 32730572 -126869211 - PB1D10 SINE Alu 0 117 4 4 834 24 0 0 0 chr3 32731573 32731597 -126868186 + AT_rich Low_complexity Low_complexity 1 24 0 4 834 423 254 92 8 chr3 32731613 32731744 -126868039 + B1F SINE Alu 2 143 -6 4 834 226 167 0 20 chr3 32731955 32732004 -126867779 + CT-rich Low_complexity Low_complexity 1 48 0 4 834 310 332 60 65 chr3 32732013 32732229 -126867554 - B4A SINE B4 -11 281 67 4 834 277 236 140 43 chr3 32732226 32732319 -126867464 - MTD-int LTR MaLR -1156 102 1 4 834 1987 209 39 15 chr3 32732319 32732618 -126867165 - MTD LTR MaLR 0 419 125 4 834 552 30 0 0 chr3 32732618 32732684 -126867099 + (CA)n Simple_repeat Simple_repeat 2 67 0 4 834 1987 209 39 15 chr3 32732684 32732793 -126866990 - MTD LTR MaLR -295 124 2 4 834 325 268 71 10 chr3 32732805 32732903 -126866880 - B1F SINE Alu -23 126 23 4 834 564 172 0 0 chr3 32733734 32733850 -126865933 + (TCCA)n Simple_repeat Simple_repeat 1 116 0 4 834 1237 171 66 73 chr3 32733850 32734284 -126865499 - MT2B LTR ERVL -43 541 1 4 834 203 167 0 27 chr3 32734660 32734697 -126865086 + C-rich Low_complexity Low_complexity 5 40 0 4 834 236 200 55 0 chr3 32734699 32734754 -126865029 - PB1D7 SINE Alu -21 99 42 4 834 245 184 20 0 chr3 32734827 32734876 -126864907 - B3 SINE B2 -4 212 163 4 834 302 276 184 15 chr3 32734891 32735027 -126864756 - HAL1-3A_ME LINE L1 -420 2438 2280 4 834 381 223 87 96 chr3 32735412 32735470 -126864313 - MTEb LTR MaLR -18 361 303 4 834 3409 146 0 11 chr3 32735470 32735751 -126864032 - RLTR12B LTR ERVK 0 528 253 4 834 1328 12 0 23 chr3 32735751 32735925 -126863858 + (TCC)n Simple_repeat Simple_repeat 2 171 0 4 834 3409 146 0 11 chr3 32735925 32736177 -126863606 - RLTR12B LTR ERVK -276 252 1 4 834 381 252 106 159 chr3 32736177 32736347 -126863436 - MTEb LTR MaLR -58 321 171 4 834 222 37 0 0 chr3 32736347 32736374 -126863409 + (TCC)n Simple_repeat Simple_repeat 3 29 0 4 834 381 252 106 159 chr3 32736374 32736477 -126863306 - MTEb LTR MaLR -209 170 59 4 834 1230 41 0 0 chr3 32737225 32737372 -126862411 + B1_Mm SINE Alu 1 147 0 4 834 22 35 0 0 chr3 32737372 32737401 -126862382 + AT_rich Low_complexity Low_complexity 1 29 0 4 834 234 0 0 0 chr3 32737415 32737441 -126862342 + (TTAA)n Simple_repeat Simple_repeat 1 26 0 4 834 4598 174 112 3 chr3 32737441 32738296 -126861487 - Lx5 LINE L1 -18 7032 6085 4 834 3586 259 130 33 chr3 32738303 32739548 -126860235 - Lx8 LINE L1 -2 7471 6106 4 834 331 191 14 14 chr3 32739576 32739645 -126860138 - ID4_ SINE ID -10 73 5 4 834 238 320 46 20 chr3 32739737 32739890 -126859893 - L1M5 LINE L1 -399 5841 5685 4 834 8309 51 1 8 chr3 32739924 32741259 -126858524 - L1Md_F2 LINE L1 -3 6579 5255 4 834 236 258 91 0 chr3 32741407 32741473 -126858310 - L1M5 LINE L1 -681 5513 5442 4 834 933 16 24 0 chr3 32741628 32741751 -126858032 + (GA)n Simple_repeat Simple_repeat 2 127 0 4 834 564 204 95 65 chr3 32741775 32741818 -126857965 - ORR1D1 LTR MaLR -195 179 138 4 834 597 12 37 0 chr3 32741818 32741900 -126857883 + (GA)n Simple_repeat Simple_repeat 2 86 0 4 834 564 204 95 65 chr3 32741900 32742024 -126857759 - ORR1D1 LTR MaLR -237 137 7 4 834 471 95 0 0 chr3 32742028 32742102 -126857681 + (TG)n Simple_repeat Simple_repeat 2 75 0 4 834 489 259 60 8 chr3 32742102 32742219 -126857564 - RSINE1 SINE B4 -41 124 2 4 834 243 0 0 0 chr3 32742235 32742262 -126857521 + (TTTTA)n Simple_repeat Simple_repeat 4 30 0 4 834 269 238 152 38 chr3 32742926 32743031 -126856752 - MLT1A1 LTR MaLR -6 402 286 4 834 234 0 0 0 chr3 32744321 32744347 -126855436 + (T)n Simple_repeat Simple_repeat 1 26 0 4 834 411 21 0 0 chr3 32744687 32744735 -126855048 + (TG)n Simple_repeat Simple_repeat 2 49 0 5 834 878 117 20 33 chr3 32744804 32744955 -126854828 + B1_Mur4 SINE Alu 1 149 -1 5 834 878 180 19 0 chr3 32744962 32745224 -126854559 + (TCCA)n Simple_repeat Simple_repeat 1 267 0 5 834 234 196 54 0 chr3 32746988 32747044 -126852739 + (TCTCTG)n Simple_repeat Simple_repeat 3 61 0 5 834 1013 243 58 50 chr3 32747061 32747321 -126852462 - B4A SINE B4 -26 266 5 5 834 316 355 42 21 chr3 32747387 32747531 -126852252 - L1MC4a LINE L1 -164 7718 7572 5 834 876 198 50 10 chr3 32747548 32747747 -126852036 - B3 SINE B2 -8 208 2 5 834 1121 169 60 18 chr3 32747751 32747968 -126851815 - URR1A DNA MER1_type 0 226 1 5 834 238 125 25 0 chr3 32748176 32748216 -126851567 - L1MC4a LINE L1 -512 7483 7443 5 834 946 253 34 57 chr3 32748217 32748481 -126851302 + B4A SINE B4 5 262 -30 5 834 365 95 0 16 chr3 32748482 32748546 -126851237 + (CA)n Simple_repeat Simple_repeat 2 64 0 5 834 387 154 0 15 chr3 32748599 32748665 -126851118 - L1MC4a LINE L1 -658 7224 7160 5 834 360 0 0 0 chr3 32748774 32748814 -126850969 + (TAA)n Simple_repeat Simple_repeat 2 41 0 5 834 232 396 0 0 chr3 32748933 32749034 -126850749 + (TG)n Simple_repeat Simple_repeat 2 102 0 5 834 255 288 0 0 chr3 32748951 32749010 -126850773 + (TATG)n Simple_repeat Simple_repeat 4 62 0 5 834 572 205 24 24 chr3 32749157 32749282 -126850501 - PB1 SINE Alu -2 125 1 5 834 543 305 76 40 chr3 32749330 32749528 -126850255 + B4A SINE B4 2 206 -86 5 834 611 265 15 0 chr3 32750050 32750186 -126849597 - ID_B1 SINE B4 -7 217 80 5 834 197 319 71 71 chr3 32750231 32750329 -126849454 + L2 LINE L2 2663 2760 -659 5 834 1093 297 132 8 chr3 32750505 32750871 -126848912 - Lx8 LINE L1 -346 7127 6709 5 834 441 0 0 0 chr3 32750871 32750920 -126848863 + (CA)n Simple_repeat Simple_repeat 2 50 0 5 834 1093 297 132 8 chr3 32750920 32751021 -126848762 - Lx8 LINE L1 -765 6708 6603 5 834 765 301 117 4 chr3 32752841 32753081 -126846702 + B4A SINE B4 1 267 -25 5 834 576 42 0 0 chr3 32753081 32753152 -126846631 + (CA)n Simple_repeat Simple_repeat 1 71 0 5 834 204 40 0 0 chr3 32753629 32753654 -126846129 + (TG)n Simple_repeat Simple_repeat 2 26 0 5 834 678 188 27 34 chr3 32753704 32753838 -126845945 + B1F SINE Alu 2 138 -11 5 834 516 32 0 0 chr3 32753838 32753900 -126845883 + (CAAAC)n Simple_repeat Simple_repeat 2 63 0 5 834 678 188 27 34 chr3 32753900 32753914 -126845869 + B1F SINE Alu 139 149 0 5 834 5712 101 21 16 chr3 32754252 32755106 -126844677 + Lx2 LINE L1 6139 6996 -1 5 834 196 294 0 19 chr3 32755367 32755419 -126844364 + L4 LINE RTE 1690 1740 -289 5 834 642 103 455 0 chr3 32756062 32756207 -126843576 - B3 SINE B2 -5 211 1 5 834 301 226 140 47 chr3 32756351 32756458 -126843325 + PB1D10 SINE Alu 1 117 0 5 834 201 129 0 0 chr3 32756464 32756495 -126843288 + (CAAAC)n Simple_repeat Simple_repeat 4 34 0 5 834 5955 43 6 10 chr3 32756612 32757341 -126842442 - L1Md_F2 LINE L1 0 6582 5857 5 834 226 322 81 0 chr3 32757812 32757899 -126841884 - MER63B DNA AcHobo -65 371 279 5 834 228 67 0 0 chr3 32758107 32758137 -126841646 + (T)n Simple_repeat Simple_repeat 1 30 0 5 834 246 212 66 66 chr3 32758222 32758313 -126841470 - PB1D10 SINE Alu 0 117 27 5 834 503 277 56 50 chr3 32758419 32758703 -126841080 - L1MA6 LINE L1 -264 6036 5729 5 834 207 0 0 0 chr3 32758703 32758726 -126841057 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 5 834 502 285 141 25 chr3 32758726 32758769 -126841014 - L1MA6 LINE L1 -575 5728 5687 5 834 319 266 0 0 chr3 32758771 32758835 -126840948 - MER63B DNA AcHobo -372 64 1 5 834 2525 112 49 32 chr3 32758999 32759438 -126840345 - RMER16 LTR ERVK 0 533 1 5 834 598 281 95 29 chr3 32759803 32760151 -126839632 - L1MB7 LINE L1 -276 5908 5538 5 834 793 217 104 21 chr3 32762368 32762561 -126837222 + B3 SINE B2 2 210 -6 5 834 2016 171 9 18 chr3 32762679 32763018 -126836765 - MTD LTR MaLR 0 419 84 5 834 321 159 0 0 chr3 32763019 32763082 -126836701 + (TATATG)n Simple_repeat Simple_repeat 2 64 0 5 834 612 156 21 8 chr3 32763529 32763651 -126836132 - MTD LTR MaLR -276 131 2 5 834 247 279 15 0 chr3 32763784 32763852 -126835931 - RMER15 LTR ERVL -105 470 402 5 834 982 295 141 31 chr3 32763853 32764307 -126835476 - Lx8 LINE L1 -209 7264 6761 5 834 680 211 20 60 chr3 32765245 32765396 -126834387 + RSINE1 SINE B4 2 146 -19 5 834 414 0 0 0 chr3 32765413 32765459 -126834324 + (TG)n Simple_repeat Simple_repeat 2 47 0 5 834 201 288 0 15 chr3 32765475 32765542 -126834241 + (TAAA)n Simple_repeat Simple_repeat 3 68 0 5 834 427 234 98 9 chr3 32766190 32766302 -126833481 - B1F1 SINE Alu -2 147 26 5 834 197 220 0 57 chr3 32766414 32766467 -126833316 - L3 LINE CR1 -4410 79 30 5 834 1094 249 79 42 chr3 32766707 32767060 -126832723 + ORR1D2 LTR MaLR 5 370 0 5 834 2570 164 2 12 chr3 32767113 32767538 -126832245 - MTC LTR MaLR 0 421 1 5 104 763 250 81 207 chr3 32767578 32768012 -126831771 + MTE2b LTR MaLR 1 379 0 5 835 180 289 51 38 chr3 32768063 32768142 -126831641 + L2c LINE L2 3298 3377 -10 5 835 262 222 16 0 chr3 32768266 32768329 -126831454 - B4 SINE B4 0 292 229 5 835 628 324 46 1 chr3 32768426 32768671 -126831112 - B4 SINE B4 -38 254 1 5 835 315 0 0 0 chr3 32768889 32768924 -126830859 + (TG)n Simple_repeat Simple_repeat 2 36 0 5 835 269 300 29 0 chr3 32768924 32768994 -126830789 - ID_B1 SINE B4 -73 151 80 5 835 456 258 108 46 chr3 32769056 32769186 -126830597 - ID_B1 SINE B4 -3 221 84 5 835 251 260 169 0 chr3 32769871 32769948 -126829835 - MamRep605 Unknown Unknown -363 513 424 5 835 573 15 0 0 chr3 32770981 32771047 -126828736 + (TTCC)n Simple_repeat Simple_repeat 4 69 0 5 835 419 116 14 8 chr3 32771072 32771180 -126828603 - B2_Mm2 SINE B2 -2 193 47 5 835 1425 68 0 6 chr3 32771208 32771386 -126828397 - B2_Mm1t SINE B2 -14 179 3 5 835 981 235 15 10 chr3 32771736 32771942 -126827841 - ID_B1 SINE B4 -13 211 5 5 835 6104 25 4 1 chr3 32771967 32772674 -126827109 + L1Md_F3 LINE L1 5876 6584 0 5 835 819 101 0 0 chr3 32773318 32773437 -126826346 + (TTTC)n Simple_repeat Simple_repeat 4 122 0 5 835 664 113 24 9 chr3 32773451 32773561 -126826222 - B2_Mm2 SINE B2 -61 155 38 5 835 21 0 0 0 chr3 32773835 32773856 -126825927 + AT_rich Low_complexity Low_complexity 1 21 0 5 835 234 81 0 0 chr3 32774259 32774296 -126825487 + (T)n Simple_repeat Simple_repeat 1 37 0 5 835 1127 50 22 0 chr3 32774298 32774437 -126825346 - B1_Mus1 SINE Alu -2 146 5 5 835 200 200 0 0 chr3 32774462 32774502 -126825281 + (TAGA)n Simple_repeat Simple_repeat 1 40 0 5 835 226 296 109 18 chr3 32774769 32774879 -126824904 - MER5A1 DNA MER1_type -37 129 10 5 835 613 271 39 6 chr3 32776684 32776862 -126822921 - ID_B1 SINE B4 -21 203 20 5 835 250 169 0 44 chr3 32776914 32776982 -126822801 + A-rich Low_complexity Low_complexity 2 66 0 5 835 256 262 71 0 chr3 32777000 32777084 -126822699 - L1MB3 LINE L1 -7 6176 6087 5 835 1272 122 16 5 chr3 32777086 32777276 -126822507 - B2_Mm2 SINE B2 0 195 4 5 835 200 153 0 92 chr3 32777286 32777306 -126822477 + A-rich Low_complexity Low_complexity 1 18 0 5 835 2938 81 7 29 chr3 32777306 32777730 -126822053 + L1_Mus1 LINE L1 6159 6567 0 5 835 1218 55 0 0 chr3 32777730 32777876 -126821907 + B1_Mus2 SINE Alu 2 147 0 5 835 200 153 0 92 chr3 32777876 32777887 -126821896 + A-rich Low_complexity Low_complexity 25 35 0 5 835 576 88 9 38 chr3 32777887 32778018 -126821765 + L1_Mus1 LINE L1 6465 6567 0 5 835 277 286 0 0 chr3 32778103 32778173 -126821610 + PB1D10 SINE Alu 3 72 -45 5 835 333 271 47 0 chr3 32778572 32778657 -126821126 - B1F2 SINE Alu -56 93 5 5 835 452 202 11 0 chr3 32778876 32778965 -126820818 - B1_Mur2 SINE Alu -18 131 42 5 835 1555 34 0 0 chr3 32779286 32779461 -126820322 + B2_Mm1a SINE B2 2 176 -17 5 835 612 79 0 0 chr3 32779878 32779967 -126819816 - L1Md_A LINE L1 0 6582 6494 5 835 1039 93 0 0 chr3 32779967 32780106 -126819677 + L1Md_T LINE L1 5866 6004 -578 5 835 212 250 0 0 chr3 32781364 32781408 -126818375 + (TG)n Simple_repeat Simple_repeat 1 44 0 5 835 354 69 0 0 chr3 32781820 32781873 -126817910 - MTC LTR MaLR 0 421 369 5 835 1221 97 6 0 chr3 32781874 32782200 -126817583 + (CCCA)n Simple_repeat Simple_repeat 1 328 0 5 835 1946 164 44 6 chr3 32782208 32782569 -126817214 - MTC LTR MaLR -46 375 1 5 835 962 266 90 44 chr3 32782839 32783338 -126816445 - RMER5 LTR ERV1 -12 522 1 5 835 450 0 0 0 chr3 32783973 32784023 -126815760 + (TG)n Simple_repeat Simple_repeat 2 51 0 5 835 286 269 32 0 chr3 32784327 32784420 -126815363 - MER31B LTR ERV1 -104 362 267 5 835 278 250 0 67 chr3 32784632 32784722 -126815061 - PB1D10 SINE Alu -3 114 31 5 835 244 154 15 15 chr3 32785172 32785238 -126814545 + L1ME4a LINE L1 6046 6111 -13 5 835 259 326 0 30 chr3 32785619 32785720 -126814063 - RMER15 LTR ERVL -45 530 433 5 835 32 0 0 0 chr3 32785854 32785886 -126813897 + AT_rich Low_complexity Low_complexity 1 32 0 5 835 896 155 0 26 chr3 32785886 32786038 -126813745 - B1_Mus1 SINE Alu 0 148 1 5 835 230 319 14 0 chr3 32786086 32786155 -126813628 + CT-rich Low_complexity Low_complexity 2 71 0 5 835 437 346 115 11 chr3 32786181 32786450 -126813333 - RMER15 LTR ERVL -4 571 275 5 835 269 265 29 0 chr3 32788164 32788232 -126811551 + ID4_ SINE ID 2 71 -12 5 835 362 179 77 87 chr3 32788714 32788799 -126810984 + ID_B1 SINE B4 122 211 -13 5 835 426 20 0 0 chr3 32788799 32788850 -126810933 + (CCAA)n Simple_repeat Simple_repeat 2 52 0 5 835 362 179 77 87 chr3 32788850 32788868 -126810915 + ID_B1 SINE B4 212 224 0 5 835 450 0 0 0 chr3 32789000 32789050 -126810733 + (TG)n Simple_repeat Simple_repeat 2 51 0 6 835 1864 221 12 22 chr3 32789568 32789984 -126809799 - MTD LTR MaLR -5 414 3 6 835 1224 88 0 0 chr3 32789999 32790170 -126809613 + (TTCC)n Simple_repeat Simple_repeat 3 173 0 6 835 1121 101 0 0 chr3 32790194 32790342 -126809441 - B1_Mus1 SINE Alu 0 148 1 6 835 243 125 0 0 chr3 32790376 32790416 -126809367 + (TG)n Simple_repeat Simple_repeat 1 40 0 6 835 389 231 103 28 chr3 32790432 32790539 -126809244 - B3A SINE B2 -82 116 2 6 835 558 0 0 0 chr3 32790585 32790647 -126809136 + (TCTA)n Simple_repeat Simple_repeat 1 62 0 6 835 832 265 20 0 chr3 32791849 32792049 -126807734 - ID_B1 SINE B4 -8 216 13 6 835 189 0 0 0 chr3 32792322 32792343 -126807440 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 6 835 4137 81 231 3 chr3 32792380 32793034 -126806749 - Lx2 LINE L1 0 6997 6195 6 835 2256 242 45 36 chr3 32793035 32793651 -126806132 - Lx7 LINE L1 -346 7350 6729 6 835 530 279 22 42 chr3 32794038 32794327 -126805456 - RLTR11B LTR ERVK -24 504 241 6 835 750 236 76 42 chr3 32794296 32794584 -126805199 - RLTR11B LTR ERVK -155 298 1 6 835 2841 188 29 9 chr3 32794584 32795231 -126804552 - MYSERV6-int LTR ERVK -54 8905 8330 6 835 1389 192 44 63 chr3 32795233 32795729 -126804054 - MYSERV6-int LTR ERVK -795 8164 7813 6 835 243 247 90 13 chr3 32795729 32795807 -126803976 - RMER4B LTR ERVK -53 532 449 6 835 1010 305 35 56 chr3 32795815 32796301 -126803482 - MYSERV-int LTR ERVK -1341 5209 4734 6 835 6285 133 13 31 chr3 32796304 32797434 -126802349 - RLTR21 LTR ERVK -4 1568 459 6 835 487 143 71 10 chr3 32797436 32797535 -126802248 + B1_Mus2 SINE Alu 7 111 -36 6 835 3389 93 0 2 chr3 32797902 32798378 -126801405 - RLTR21 LTR ERVK -1097 475 1 6 835 414 236 168 68 chr3 32798378 32798569 -126801214 - MYSERV-int LTR ERVK -1890 436 319 6 835 833 211 77 21 chr3 32798616 32798849 -126800934 - MYSERV-int LTR ERVK -2107 4443 4198 6 835 279 54 0 0 chr3 32798989 32799026 -126800757 + (TG)n Simple_repeat Simple_repeat 2 38 0 6 835 206 232 0 0 chr3 32799085 32799141 -126800642 + (TTTA)n Simple_repeat Simple_repeat 2 57 0 6 835 508 272 116 95 chr3 32799698 32800129 -126799654 - RLTR11B LTR ERVK -13 440 1 6 835 459 0 0 0 chr3 32800276 32800327 -126799456 + (CAAAC)n Simple_repeat Simple_repeat 2 52 0 6 835 333 0 0 0 chr3 32801740 32801777 -126798006 + (CA)n Simple_repeat Simple_repeat 2 38 0 6 835 556 265 415 63 chr3 32801782 32802069 -126797714 - RLTR20D LTR ERVK -96 438 51 6 835 339 85 0 0 chr3 32802275 32802322 -126797461 + (GGGA)n Simple_repeat Simple_repeat 2 48 0 6 835 857 274 58 124 chr3 32802324 32802670 -126797113 - MTE2b LTR MaLR -54 325 3 6 835 269 51 26 0 chr3 32803795 32803834 -126795949 + (TGGGGG)n Simple_repeat Simple_repeat 3 42 0 6 835 180 0 0 0 chr3 32804616 32804636 -126795147 + (T)n Simple_repeat Simple_repeat 1 20 0 6 835 183 80 0 0 chr3 32804683 32804708 -126795075 + (TTTCC)n Simple_repeat Simple_repeat 1 25 0 6 835 479 160 0 11 chr3 32804715 32804810 -126794973 + CT-rich Low_complexity Low_complexity 2 95 0 6 835 325 276 13 0 chr3 32805302 32805378 -126794405 - ID4_ SINE ID -5 78 2 6 835 276 175 0 0 chr3 32805939 32806002 -126793781 + (TG)n Simple_repeat Simple_repeat 1 63 0 6 835 239 291 67 30 chr3 32806074 32806191 -126793592 - B4A SINE B4 -169 123 1 6 835 216 62 62 0 chr3 32806368 32806400 -126793383 - PB1D10 SINE Alu -8 109 76 6 835 23 33 0 0 chr3 32806687 32806717 -126793066 + AT_rich Low_complexity Low_complexity 1 30 0 6 835 525 242 17 0 chr3 32806826 32806946 -126792837 + B1F SINE Alu 3 124 -25 6 835 462 284 0 54 chr3 32806946 32806961 -126792822 + ID_B1 SINE B4 84 211 -13 6 835 189 0 0 0 chr3 32806961 32806982 -126792801 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 6 835 462 284 0 54 chr3 32806982 32806994 -126792789 + ID_B1 SINE B4 212 223 -1 6 835 1203 175 13 9 chr3 32807056 32807281 -126792502 + URR1A DNA MER1_type 1 226 0 6 835 215 203 55 55 chr3 32807489 32807562 -126792221 + MIR SINE MIR 79 151 -111 6 835 406 245 80 62 chr3 32808282 32808556 -126791227 + B4A SINE B4 2 280 -12 6 835 790 78 16 0 chr3 32808562 32808690 -126791093 + (TC)n Simple_repeat Simple_repeat 1 130 0 6 835 384 59 0 0 chr3 32808690 32808740 -126791043 + (CA)n Simple_repeat Simple_repeat 1 51 0 6 835 737 235 48 0 chr3 32809740 32809927 -126789856 + B3 SINE B2 16 211 -5 6 835 377 293 51 0 chr3 32810833 32810990 -126788793 - MER5A1 DNA MER1_type 0 166 2 6 835 750 201 0 7 chr3 32811930 32812070 -126787713 - ID_B1 SINE B4 0 224 86 6 835 1280 129 78 37 chr3 32813159 32813376 -126786407 + URR1A DNA MER1_type 1 226 0 6 835 1002 201 36 0 chr3 32814005 32814199 -126785584 - B3 SINE B2 -14 202 2 6 835 295 289 66 44 chr3 32814343 32814490 -126785293 + MIRb SINE MIR 14 163 -105 6 835 1130 268 168 61 chr3 32815020 32816302 -126783481 - L1MB7 LINE L1 -47 6137 4743 6 835 501 47 0 0 chr3 32818180 32818244 -126781539 + (TG)n Simple_repeat Simple_repeat 2 65 0 6 835 255 256 25 25 chr3 32818268 32818348 -126781435 - ID4_ SINE ID -2 81 2 6 835 180 339 0 0 chr3 32818590 32818649 -126781134 - MIR SINE MIR -34 228 170 6 835 221 258 32 0 chr3 32819021 32819083 -126780700 + CT-rich Low_complexity Low_complexity 3 66 0 6 835 687 170 320 6 chr3 32819176 32819348 -126780435 + URR1A DNA MER1_type 1 226 0 6 835 231 290 102 24 chr3 32819781 32819908 -126779875 - RLTR11A LTR ERVK -280 248 112 6 835 356 278 40 34 chr3 32820236 32820385 -126779398 + B4A SINE B4 142 291 -1 6 835 565 279 93 13 chr3 32821078 32821314 -126778469 - RMER15 LTR ERVL 0 575 321 6 835 432 0 0 0 chr3 32821468 32821516 -126778267 + (TTC)n Simple_repeat Simple_repeat 2 49 0 6 835 552 68 0 0 chr3 32821517 32821590 -126778193 + (TC)n Simple_repeat Simple_repeat 2 74 0 6 835 180 353 110 0 chr3 32822035 32822171 -126777612 + MER5A DNA MER1_type 4 154 -35 6 835 245 238 63 0 chr3 32823520 32823583 -126776200 + tRNA-Ala-GCY_ tRNA tRNA 1 67 -8 6 835 245 316 71 7 chr3 32824564 32824704 -126775079 - LTR37B LTR ERV1 -1 467 319 6 835 299 289 13 0 chr3 32824729 32824805 -126774978 - ID4 SINE ID -4 79 3 6 835 4506 112 79 11 chr3 32825307 32826015 -126773768 + RMER6A LTR ERVK 1 756 0 6 835 186 133 0 0 chr3 32826110 32826140 -126773643 + (CAAG)n Simple_repeat Simple_repeat 2 31 0 6 835 1532 218 96 8 chr3 32826755 32827129 -126772654 + MTD LTR MaLR 10 416 -3 6 835 488 339 144 45 chr3 32828110 32828639 -126771144 - L2 LINE L2 -338 3081 2501 6 835 253 207 17 0 chr3 32828646 32828704 -126771079 + L1M4 LINE L1 3952 4010 -2136 6 835 1087 109 11 0 chr3 32828843 32829017 -126770766 + (TTCC)n Simple_repeat Simple_repeat 4 179 0 6 835 567 66 0 0 chr3 32829017 32829093 -126770690 + (TC)n Simple_repeat Simple_repeat 2 77 0 6 835 232 276 0 0 chr3 32829103 32829161 -126770622 - PB1D10 SINE Alu -42 75 18 6 835 334 280 23 46 chr3 32829989 32830120 -126769663 + CT-rich Low_complexity Low_complexity 3 130 0 6 835 214 256 0 16 chr3 32830310 32830433 -126769350 + (TG)n Simple_repeat Simple_repeat 1 121 0 6 835 1617 202 58 19 chr3 32830994 32831448 -126768335 - BGLII_B LTR ERVK -6 435 22 6 835 231 36 0 0 chr3 32831498 32831526 -126768257 + (TTTTG)n Simple_repeat Simple_repeat 1 28 0 6 835 560 194 39 39 chr3 32831526 32831655 -126768128 - B1_Mur1 SINE Alu -13 136 8 6 835 240 298 82 30 chr3 32831554 32831689 -126768094 - B4 SINE B4 -94 198 57 6 835 300 156 31 0 chr3 32831854 32831918 -126767865 + ID_B1 SINE B4 146 211 -13 6 835 264 185 0 0 chr3 32832203 32832257 -126767526 + A-rich Low_complexity Low_complexity 1 54 0 6 835 273 109 0 0 chr3 32832651 32832697 -126767086 + (TG)n Simple_repeat Simple_repeat 1 46 0 6 835 1383 213 155 3 chr3 32835675 32836037 -126763746 - MTD LTR MaLR 0 419 3 6 835 500 118 0 23 chr3 32837480 32837567 -126762216 + (TTCC)n Simple_repeat Simple_repeat 3 87 0 6 835 358 246 82 0 chr3 32837621 32837731 -126762052 - MLT1D LTR MaLR -279 226 108 6 835 436 284 37 9 chr3 32837735 32837873 -126761910 + ID_B1 SINE B4 96 234 -58 6 835 280 179 139 13 chr3 32839183 32839262 -126760521 - 7SK RNA RNA -221 110 22 6 835 412 219 0 20 chr3 32839288 32839386 -126760397 - PB1D10 SINE Alu -5 112 17 6 835 225 0 0 0 chr3 32839996 32840021 -126759762 + (TG)n Simple_repeat Simple_repeat 2 26 0 6 835 216 94 57 0 chr3 32840031 32840084 -126759699 + (TAA)n Simple_repeat Simple_repeat 1 56 0 6 835 845 244 40 0 chr3 32840137 32840338 -126759445 + B4A SINE B4 1 209 -83 6 835 487 270 16 78 chr3 32840340 32840533 -126759250 + B3A SINE B2 2 182 -16 6 835 181 119 48 0 chr3 32840534 32840576 -126759207 + (CA)n Simple_repeat Simple_repeat 1 44 0 6 835 710 121 29 11 chr3 32840601 32840771 -126759012 + (CA)n Simple_repeat Simple_repeat 1 173 0 6 835 3401 28 5 10 chr3 32840771 32841169 -126758614 + MTA_Mm LTR MaLR 1 396 0 6 835 265 175 29 19 chr3 32841204 32841309 -126758474 + (CA)n Simple_repeat Simple_repeat 1 106 0 6 835 212 125 0 59 chr3 32841333 32841401 -126758382 + (CA)n Simple_repeat Simple_repeat 1 64 0 6 835 248 131 0 21 chr3 32841431 32841478 -126758305 + (CA)n Simple_repeat Simple_repeat 1 46 0 6 835 204 67 0 0 chr3 32841486 32841516 -126758267 + (TC)n Simple_repeat Simple_repeat 2 31 0 6 835 3260 81 47 0 chr3 32841566 32842009 -126757774 + L1_Mus2 LINE L1 6103 6566 0 6 835 1153 73 0 12 chr3 32844332 32844499 -126755284 + (TTTC)n Simple_repeat Simple_repeat 1 165 0 6 835 708 109 0 30 chr3 32844499 32844632 -126755151 + (TCCC)n Simple_repeat Simple_repeat 2 130 0 6 835 773 253 32 14 chr3 32844632 32844852 -126754931 - ID_B1 SINE B4 0 224 1 6 835 1350 6 0 0 chr3 32845145 32845301 -126754482 - L1Md_T LINE L1 0 6582 6427 6 835 395 224 261 0 chr3 32846620 32846754 -126753029 - ID_B1 SINE B4 -55 169 1 6 835 365 240 27 49 chr3 32850456 32850640 -126749143 + C-rich Low_complexity Low_complexity 1 180 0 7 835 427 274 117 14 chr3 32850703 32850925 -126748858 + Charlie1a DNA MER1_type 1110 1354 -101 7 835 198 0 0 0 chr3 32851898 32851920 -126747863 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 7 835 324 299 120 0 chr3 32852152 32852269 -126747514 - B3A SINE B2 -67 131 1 7 835 767 294 5 19 chr3 32852297 32852512 -126747271 + B3 SINE B2 1 212 -4 7 835 770 230 78 5 chr3 32853672 32853864 -126745919 - B3 SINE B2 -9 207 2 7 835 515 243 7 14 chr3 32855221 32855363 -126744420 - B1_Mus1 SINE Alu -1 147 7 7 835 580 229 15 0 chr3 32856075 32856206 -126743577 + B1F SINE Alu 8 140 -9 7 835 277 350 0 0 chr3 32856931 32857034 -126742749 + (TATG)n Simple_repeat Simple_repeat 1 103 0 7 835 22 70 0 0 chr3 32857074 32857117 -126742666 + AT_rich Low_complexity Low_complexity 1 43 0 7 835 1075 202 47 9 chr3 32857979 32858194 -126741589 - ID_B1 SINE B4 -1 223 1 7 835 273 344 15 44 chr3 32858271 32858408 -126741375 - Tigger5 DNA MER2_type -4 2402 2270 7 835 428 336 92 70 chr3 32858386 32858613 -126741170 - Tigger5 DNA MER2_type -2169 237 6 7 835 1857 168 78 9 chr3 32860922 32861270 -126738513 + ORR1D1 LTR MaLR 2 373 -1 7 835 204 311 161 1 chr3 32861365 32861539 -126738244 + MIRb SINE MIR 5 210 -58 7 835 1510 297 80 4 chr3 32861564 32862064 -126737719 + Lx8 LINE L1 6928 7465 -8 7 835 428 249 39 39 chr3 32862683 32862863 -126736920 + (TATG)n Simple_repeat Simple_repeat 1 180 0 7 835 378 107 0 0 chr3 32862893 32862949 -126736834 + (TCTA)n Simple_repeat Simple_repeat 2 57 0 7 835 628 295 100 30 chr3 32862956 32863225 -126736558 - B4A SINE B4 0 292 5 7 835 350 277 9 26 chr3 32863297 32863412 -126736371 + (TATG)n Simple_repeat Simple_repeat 4 116 0 7 835 22 56 0 0 chr3 32863672 32863708 -126736075 + AT_rich Low_complexity Low_complexity 1 36 0 7 835 1913 318 104 25 chr3 32864261 32864573 -126735210 + Lx8 LINE L1 4689 5033 -814 7 835 780 215 70 5 chr3 32864573 32864760 -126735023 - B3 SINE B2 -14 202 4 7 835 1913 321 79 60 chr3 32864760 32866267 -126733516 + Lx8 LINE L1 5034 6569 -904 7 835 1540 257 192 14 chr3 32866269 32866830 -126732953 + Lx8 LINE L1 6813 7473 0 7 835 431 326 133 5 chr3 32867051 32867239 -126732544 - B4A SINE B4 -5 287 76 7 835 1089 286 71 11 chr3 32869207 32869588 -126730195 + Lx8 LINE L1 7070 7473 0 7 835 624 91 0 0 chr3 32869790 32869878 -126729905 + (GGGAGA)n Simple_repeat Simple_repeat 4 91 0 7 835 428 230 0 0 chr3 32870406 32870480 -126729303 + Lx7 LINE L1 6547 6620 -1076 7 835 1442 214 69 21 chr3 32870480 32870815 -126728968 + ORR1D1 LTR MaLR 1 351 -23 7 835 540 160 216 0 chr3 32870847 32870972 -126728811 + Lx7 LINE L1 6617 6768 -928 7 835 222 118 0 0 chr3 32871793 32871827 -126727956 + (TA)n Simple_repeat Simple_repeat 2 35 0 7 835 486 0 0 0 chr3 32871844 32871898 -126727885 + (TCTA)n Simple_repeat Simple_repeat 1 54 0 7 835 967 277 40 3 chr3 32872403 32872700 -126727083 + MTEb LTR MaLR 72 379 0 7 835 492 100 30 0 chr3 32873220 32873310 -126726473 + (TTTTA)n Simple_repeat Simple_repeat 3 95 0 7 835 1136 90 0 0 chr3 32873310 32873455 -126726328 - B1_Mus2 SINE Alu 0 147 3 7 835 492 100 30 0 chr3 32873455 32873464 -126726319 + (TTTTA)n Simple_repeat Simple_repeat 4 12 0 7 835 294 277 15 0 chr3 32874229 32874294 -126725489 + ID SINE ID 8 73 -151 7 835 282 56 0 0 chr3 32874298 32874334 -126725449 + (CA)n Simple_repeat Simple_repeat 2 37 0 7 835 513 0 0 0 chr3 32875569 32875626 -126724157 + (GA)n Simple_repeat Simple_repeat 2 58 0 7 835 1169 168 47 5 chr3 32876576 32876791 -126722992 + URR1B DNA MER1_type 1 224 -1 7 835 520 266 63 25 chr3 32877446 32877604 -126722179 - RSINE1 SINE B4 0 165 2 7 835 27 49 0 0 chr3 32877698 32877739 -126722044 + AT_rich Low_complexity Low_complexity 1 41 0 7 835 23 54 0 0 chr3 32877835 32877872 -126721911 + AT_rich Low_complexity Low_complexity 1 37 0 7 835 276 77 0 0 chr3 32877940 32877979 -126721804 + (CA)n Simple_repeat Simple_repeat 1 39 0 7 835 256 343 42 14 chr3 32879164 32879306 -126720477 + L3b LINE CR1 232 377 -105 7 835 837 276 32 38 chr3 32879696 32880009 -126719774 + L1MA6 LINE L1 4737 5047 -1096 7 835 408 20 0 0 chr3 32880011 32880060 -126719723 + (CA)n Simple_repeat Simple_repeat 2 50 0 7 835 471 113 0 0 chr3 32880199 32880270 -126719513 + (GA)n Simple_repeat Simple_repeat 2 72 0 7 835 358 241 154 27 chr3 32880327 32880476 -126719307 + L1MA6 LINE L1 5359 5526 -786 7 835 608 259 31 48 chr3 32880497 32880724 -126719059 + L1MA6 LINE L1 5876 6098 -202 7 835 709 245 122 0 chr3 32880833 32881021 -126718762 - B3 SINE B2 -4 212 2 7 835 21 36 0 0 chr3 32882073 32882101 -126717682 + AT_rich Low_complexity Low_complexity 1 28 0 7 835 189 0 0 0 chr3 32882294 32882315 -126717468 + (TG)n Simple_repeat Simple_repeat 2 22 0 7 835 4056 138 46 162 chr3 32882538 32883606 -126716177 + RMER21A LTR ERV1 4 947 0 7 835 297 179 0 18 chr3 32883607 32883664 -126716119 + RMER21B LTR ERV1 766 821 -21 7 835 537 235 22 15 chr3 32883667 32883801 -126715982 + RMER21B LTR ERV1 700 834 -8 7 835 520 322 24 61 chr3 32884602 32884631 -126715152 - B4 SINE B4 0 292 264 7 835 1176 95 0 0 chr3 32884631 32884799 -126714984 + (TG)n Simple_repeat Simple_repeat 2 169 0 7 835 520 322 24 61 chr3 32884799 32884981 -126714802 - B4 SINE B4 -29 263 89 7 835 848 309 113 12 chr3 32885572 32885988 -126713795 - MLT1F1 LTR MaLR -40 529 72 7 835 231 208 0 20 chr3 32886069 32886118 -126713665 - L1MD3 LINE L1 -598 7397 7350 7 835 922 230 104 123 chr3 32887856 32888277 -126711506 - MTD LTR MaLR 0 419 7 7 835 663 254 15 73 chr3 32888699 32888903 -126710880 - B3A SINE B2 -4 194 3 7 835 365 286 90 25 chr3 32889124 32889246 -126710537 - B4 SINE B4 -155 137 8 7 835 955 185 40 0 chr3 32889271 32889422 -126710361 + RSINE1 SINE B4 2 158 -7 7 835 760 309 21 13 chr3 32892024 32892047 -126707736 - B4A SINE B4 0 292 270 7 835 450 79 0 0 chr3 32892047 32892110 -126707673 + (TG)n Simple_repeat Simple_repeat 2 64 0 7 835 760 309 21 13 chr3 32892110 32892322 -126707461 - B4A SINE B4 -23 269 55 7 835 397 313 14 40 chr3 32892614 32892791 -126706992 - MLT1B LTR MaLR 0 467 251 7 835 624 262 33 95 chr3 32893092 32893303 -126706480 + B3A SINE B2 1 198 0 7 835 317 185 99 0 chr3 32893663 32893744 -126706039 + L1MA8 LINE L1 4520 4608 -1532 7 835 1622 206 96 0 chr3 32893795 32894149 -126705634 - MTD LTR MaLR 0 419 32 7 835 1091 284 168 30 chr3 32894179 32895041 -126704742 + L1MA8 LINE L1 5308 6288 -3 7 835 1032 223 24 9 chr3 32895628 32895841 -126703942 + B3 SINE B2 1 216 0 7 835 473 285 55 0 chr3 32896067 32896232 -126703551 - MER5A DNA MER1_type 0 189 16 7 835 916 293 53 88 chr3 32896304 32896351 -126703432 + MTE2a LTR MaLR 1 43 -376 7 835 1592 233 78 23 chr3 32896351 32896747 -126703036 - MTD LTR MaLR 0 419 2 7 835 1027 252 35 88 chr3 32896747 32897133 -126702650 + MTE2a LTR MaLR 44 419 0 7 835 21 0 0 0 chr3 32897495 32897516 -126702267 + AT_rich Low_complexity Low_complexity 1 21 0 7 835 404 314 103 19 chr3 32898234 32898390 -126701393 - B3A SINE B2 -29 169 1 7 835 392 246 246 18 chr3 32898509 32898733 -126701050 - L1MA4 LINE L1 -358 5942 5668 7 836 804 268 97 30 chr3 32900173 32900442 -126699341 - B4 SINE B4 -3 289 3 7 836 393 280 174 0 chr3 32901475 32901607 -126698176 - B3A SINE B2 -41 157 3 7 836 1520 179 11 6 chr3 32902017 32902300 -126697483 + RLTR11A LTR ERVK 1 260 -303 7 836 1720 164 28 31 chr3 32902324 32902671 -126697112 + RLTR11A LTR ERVK 200 528 0 7 836 928 230 34 26 chr3 32903698 32904049 -126695734 + MTD LTR MaLR 1 405 -14 7 836 741 51 0 0 chr3 32904206 32904304 -126695479 + (CA)n Simple_repeat Simple_repeat 1 98 0 7 836 242 200 108 0 chr3 32904400 32904465 -126695318 + polypyrimidine Low_complexity Low_complexity 4 75 0 7 836 346 155 55 72 chr3 32904465 32904646 -126695137 + CT-rich Low_complexity Low_complexity 3 180 0 7 836 413 163 11 0 chr3 32905253 32905345 -126694438 + (CA)n Simple_repeat Simple_repeat 2 94 0 7 836 245 344 55 23 chr3 32905396 32905524 -126694259 + MIRb SINE MIR 4 135 -133 7 836 366 23 0 0 chr3 32906312 32906355 -126693428 + (TG)n Simple_repeat Simple_repeat 2 44 0 7 836 968 288 11 36 chr3 32906393 32906674 -126693109 - B4 SINE B4 -18 274 1 7 836 228 308 85 8 chr3 32907462 32907580 -126692203 + MIR SINE MIR 84 210 -52 7 836 525 32 0 0 chr3 32907732 32907795 -126691988 + (TC)n Simple_repeat Simple_repeat 1 63 0 7 836 233 380 0 0 chr3 32908916 32909029 -126690754 + (TATATG)n Simple_repeat Simple_repeat 1 113 0 7 836 275 260 39 0 chr3 32909128 32909205 -126690578 + MLT1D LTR MaLR 149 228 -277 7 836 228 319 20 41 chr3 32909309 32909407 -126690376 + MLT1D LTR MaLR 410 505 0 7 836 237 65 0 0 chr3 32909732 32909763 -126690020 + (TA)n Simple_repeat Simple_repeat 1 31 0 7 836 438 263 30 2 chr3 32909823 32909953 -126689830 + PB1D9 SINE Alu 4 137 -11 7 836 233 179 35 18 chr3 32910175 32910232 -126689551 + (TG)n Simple_repeat Simple_repeat 1 58 0 7 836 261 316 223 33 chr3 32910239 32910481 -126689302 - B4A SINE B4 -4 288 1 7 836 547 60 0 0 chr3 32910879 32910946 -126688837 + U4 snRNA snRNA 1 67 -78 7 836 326 248 120 64 chr3 32911049 32911174 -126688609 + ID_B1 SINE B4 93 224 0 7 836 546 72 0 24 chr3 32911175 32911260 -126688523 + L1_Mus2 LINE L1 6484 6566 0 7 836 240 296 0 0 chr3 32911279 32911333 -126688450 + ID4_ SINE ID 30 83 0 7 836 502 266 107 63 chr3 32911613 32911866 -126687917 + MLT1C LTR MaLR 1 264 -203 7 836 403 292 35 35 chr3 32912019 32912161 -126687622 - B4A SINE B4 -149 143 2 7 836 185 300 86 0 chr3 32912567 32912637 -126687146 - MIRb SINE MIR -73 195 120 7 836 625 252 24 0 chr3 32913619 32913742 -126686041 + RSINE1 SINE B4 2 127 -38 7 836 337 264 89 59 chr3 32913742 32913788 -126685995 + B2_Mm2 SINE B2 1 174 -21 8 836 21 0 0 0 chr3 32914556 32914577 -126685206 + AT_rich Low_complexity Low_complexity 1 21 0 8 836 359 260 0 40 chr3 32917963 32918039 -126681744 + ID2 SINE ID 7 79 -4 8 836 249 157 250 57 chr3 32919074 32919162 -126680621 - Lx9 LINE L1 -1 7643 7539 8 836 1310 54 0 0 chr3 32919183 32919331 -126680452 - B1_Mus1 SINE Alu 0 148 1 8 836 864 297 89 25 chr3 32919628 32920022 -126679761 + MTD LTR MaLR 1 419 0 8 836 516 235 175 33 chr3 32920872 32921083 -126678700 - MER33 DNA MER1_type -83 241 1 8 836 198 0 0 0 chr3 32924126 32924148 -126675635 + (T)n Simple_repeat Simple_repeat 1 22 0 8 836 444 37 0 0 chr3 32924727 32924781 -126675002 + (TG)n Simple_repeat Simple_repeat 2 55 0 8 836 233 319 0 28 chr3 32927452 32927523 -126672260 - PB1D10 SINE Alu -27 90 22 8 836 324 83 0 0 chr3 32927870 32927918 -126671865 + (TG)n Simple_repeat Simple_repeat 1 48 0 8 836 312 27 0 0 chr3 32927918 32927954 -126671829 + (GA)n Simple_repeat Simple_repeat 1 37 0 8 836 404 255 137 0 chr3 32927955 32928057 -126671726 - RSINE1 SINE B4 -47 118 3 8 836 360 0 0 0 chr3 32928952 32928992 -126670791 + (TG)n Simple_repeat Simple_repeat 1 40 0 8 836 260 250 0 18 chr3 32928994 32929051 -126670732 - B3A SINE B2 -61 137 82 8 836 320 111 56 0 chr3 32931443 32931515 -126668268 + (TA)n Simple_repeat Simple_repeat 1 76 0 8 836 391 74 14 14 chr3 32931631 32931700 -126668083 + (TCTA)n Simple_repeat Simple_repeat 2 70 0 8 836 274 266 95 57 chr3 32931813 32932024 -126667759 + MIRc SINE MIR 8 226 -42 8 836 342 0 0 0 chr3 32932520 32932558 -126667225 + (TG)n Simple_repeat Simple_repeat 1 38 0 8 836 689 58 10 0 chr3 32932558 32932660 -126667123 + (GA)n Simple_repeat Simple_repeat 1 104 0 8 836 1024 268 26 15 chr3 32932669 32932938 -126666845 - B4 SINE B4 -18 274 3 8 836 299 301 0 0 chr3 32933224 32933297 -126666486 - RSINE1 SINE B4 -48 117 45 8 836 270 138 0 0 chr3 32933555 32933613 -126666170 + (CAAAA)n Simple_repeat Simple_repeat 2 59 0 8 836 1314 121 136 0 chr3 32934052 32934251 -126665532 + URR1A DNA MER1_type 1 226 0 8 836 23 33 0 0 chr3 32934369 32934399 -126665384 + AT_rich Low_complexity Low_complexity 1 30 0 8 836 977 254 148 19 chr3 32934606 32934923 -126664860 + ORR1E LTR MaLR 2 359 0 8 836 252 0 0 0 chr3 32935514 32935542 -126664241 + (TGAA)n Simple_repeat Simple_repeat 3 30 0 8 836 3360 284 68 34 chr3 32936182 32936276 -126663507 + Lx8 LINE L1 6304 6401 -1072 8 836 342 0 0 0 chr3 32936276 32936314 -126663469 + (CA)n Simple_repeat Simple_repeat 2 39 0 8 836 3360 284 68 34 chr3 32936314 32937348 -126662435 + Lx8 LINE L1 6402 7470 -3 8 836 227 214 54 72 chr3 32937258 32937369 -126662414 + RMER1C Other Other 1230 1338 -4 8 836 467 33 16 0 chr3 32937401 32937462 -126662321 + (TCTA)n Simple_repeat Simple_repeat 1 62 0 8 836 237 263 126 44 chr3 32937480 32937663 -126662120 + LTR85a LTR Gypsy? 494 691 -11 8 836 339 121 0 0 chr3 32938214 32938272 -126661511 + (TG)n Simple_repeat Simple_repeat 1 58 0 8 836 924 302 50 12 chr3 32938277 32938535 -126661248 - B4 SINE B4 -19 273 6 8 836 770 222 180 6 chr3 32938566 32938738 -126661045 - B3 SINE B2 -14 202 1 8 836 729 88 0 0 chr3 32941445 32941547 -126658236 + (GGAA)n Simple_repeat Simple_repeat 3 104 0 8 836 825 264 67 35 chr3 32941928 32942211 -126657572 - B4A SINE B4 0 292 1 8 836 198 0 0 0 chr3 32943008 32943030 -126656753 + (T)n Simple_repeat Simple_repeat 1 22 0 8 836 398 311 39 84 chr3 32944866 32945045 -126654738 - B4A SINE B4 -120 172 2 8 836 399 113 0 0 chr3 32945170 32945232 -126654551 + (TG)n Simple_repeat Simple_repeat 2 63 0 8 836 502 319 14 0 chr3 32945233 32945371 -126654412 - B4 SINE B4 -151 141 2 8 836 420 20 0 0 chr3 32945513 32945562 -126654221 + (TG)n Simple_repeat Simple_repeat 2 50 0 8 836 515 250 85 0 chr3 32945972 32946136 -126653647 - L1MA8 LINE L1 -117 6174 5997 8 836 390 189 51 31 chr3 32946164 32946262 -126653521 - PB1D9 SINE Alu -5 115 16 8 836 236 261 0 0 chr3 32946269 32946334 -126653449 - L1MA8 LINE L1 -367 5945 5881 8 836 313 239 25 94 chr3 32946772 32946880 -126652903 - B1F SINE Alu -10 110 7 8 836 487 319 19 12 chr3 32946804 32946966 -126652817 - ID_B1 SINE B4 -60 164 2 8 836 288 0 0 0 chr3 32947503 32947535 -126652248 + (CA)n Simple_repeat Simple_repeat 1 32 0 8 836 297 0 0 0 chr3 32947667 32947700 -126652083 + (CA)n Simple_repeat Simple_repeat 2 34 0 8 836 416 91 15 0 chr3 32947700 32947766 -126652017 + (GA)n Simple_repeat Simple_repeat 1 67 0 8 836 297 0 0 0 chr3 32948697 32948730 -126651053 + (CA)n Simple_repeat Simple_repeat 2 34 0 8 836 495 208 0 0 chr3 32949059 32949179 -126650604 + GA-rich Low_complexity Low_complexity 1 120 0 8 836 264 30 0 0 chr3 32949320 32949353 -126650430 + (TG)n Simple_repeat Simple_repeat 1 33 0 8 836 476 301 84 0 chr3 32949355 32949498 -126650285 - B3A SINE B2 -42 156 2 8 836 929 69 131 0 chr3 32949794 32949924 -126649859 - B1_Mm SINE Alu 0 147 1 8 836 965 190 0 32 chr3 32949949 32950134 -126649649 - RMER10B LTR ERVL 0 398 220 8 836 2970 79 12 25 chr3 32950361 32950762 -126649021 + MTA_Mm LTR MaLR 1 396 0 8 836 295 169 14 58 chr3 32951521 32951590 -126648193 - Lx8 LINE L1 0 7473 7408 8 836 423 306 82 22 chr3 32951571 32951755 -126648028 - Lx8 LINE L1 -466 7007 6813 8 836 369 0 0 0 chr3 32952529 32952570 -126647213 + (CA)n Simple_repeat Simple_repeat 2 42 0 8 836 332 338 73 0 chr3 32952680 32952816 -126646967 + Lx9 LINE L1 6847 6992 -652 8 836 231 179 0 0 chr3 32952818 32952857 -126646926 + CT-rich Low_complexity Low_complexity 2 40 0 8 836 247 262 90 60 chr3 32953624 32953758 -126646025 + MIRb SINE MIR 46 183 -85 8 836 817 263 57 19 chr3 32955066 32955380 -126644403 + L1_Mur3 LINE L1 2089 2414 -3466 8 836 333 0 0 0 chr3 32955769 32955806 -126643977 + (CAA)n Simple_repeat Simple_repeat 2 38 0 8 836 357 62 0 0 chr3 32955852 32955900 -126643883 + (TG)n Simple_repeat Simple_repeat 1 48 0 8 836 890 247 94 8 chr3 32955924 32956169 -126643614 - B4A SINE B4 -18 274 9 8 836 279 0 0 0 chr3 32956246 32956277 -126643506 + (TTA)n Simple_repeat Simple_repeat 3 33 0 8 836 279 0 0 0 chr3 32957177 32957208 -126642575 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 8 836 312 164 0 0 chr3 32958490 32958557 -126641226 + (ATGGTG)n Simple_repeat Simple_repeat 2 68 0 8 836 261 210 0 0 chr3 32958891 32958953 -126640830 + (TATG)n Simple_repeat Simple_repeat 4 65 0 8 836 252 0 0 0 chr3 32959718 32959746 -126640037 + (CAG)n Simple_repeat Simple_repeat 1 28 0 8 836 241 335 61 61 chr3 32959968 32960213 -126639570 - Lx8 LINE L1 -20 7453 7209 8 836 525 285 8 0 chr3 32964009 32964132 -126635651 - ID_B1 SINE B4 -14 210 87 8 836 851 266 60 39 chr3 32964140 32964509 -126635274 + MTE2a LTR MaLR 4 375 -44 8 836 395 177 25 0 chr3 32964542 32964621 -126635162 - ID SINE ID -142 82 2 8 836 499 232 0 67 chr3 32965145 32965279 -126634504 - B3A SINE B2 0 198 74 8 836 306 0 0 0 chr3 32965560 32965594 -126634189 + (TG)n Simple_repeat Simple_repeat 1 34 0 8 836 387 60 0 0 chr3 32966367 32966417 -126633366 + (TA)n Simple_repeat Simple_repeat 1 50 0 8 836 384 206 0 80 chr3 32967252 32967352 -126632431 - B4 SINE B4 -86 206 115 8 836 4561 39 11 0 chr3 32968563 32969108 -126630675 - L1Md_F3 LINE L1 -3 6581 6031 8 836 1230 297 73 33 chr3 32970280 32970733 -126629050 + Lx8 LINE L1 7003 7473 0 8 836 363 333 24 54 chr3 32971289 32971416 -126628367 + RSINE1 SINE B4 3 131 -34 8 836 216 0 0 0 chr3 32971416 32971440 -126628343 + (TG)n Simple_repeat Simple_repeat 1 24 0 8 836 363 333 24 54 chr3 32971440 32971480 -126628303 + RSINE1 SINE B4 132 165 0 8 836 779 109 16 0 chr3 32972731 32972859 -126626924 + (TTTC)n Simple_repeat Simple_repeat 3 132 0 8 836 211 242 0 16 chr3 32976711 32976774 -126623009 + (TA)n Simple_repeat Simple_repeat 2 63 0 8 836 23 33 0 0 chr3 32977318 32977348 -126622435 + AT_rich Low_complexity Low_complexity 1 30 0 8 836 366 226 0 0 chr3 32977950 32978056 -126621727 + (TG)n Simple_repeat Simple_repeat 2 107 0 8 836 466 169 0 13 chr3 32982821 32982899 -126616884 + ID4 SINE ID 5 81 -2 8 836 955 121 12 6 chr3 32984440 32984607 -126615176 + (TTTC)n Simple_repeat Simple_repeat 3 170 0 8 836 3056 81 36 16 chr3 32984607 32985039 -126614744 - Lx LINE L1 -15 6639 6196 8 836 291 54 0 0 chr3 32985501 32985538 -126614245 + (TG)n Simple_repeat Simple_repeat 2 38 0 8 836 454 250 8 17 chr3 32985888 32986006 -126613777 - B1_Mur1 SINE Alu -21 128 12 8 836 180 0 0 0 chr3 32988955 32988975 -126610808 + (TTTTG)n Simple_repeat Simple_repeat 3 22 0 8 836 413 224 126 75 chr3 32989762 32989921 -126609862 - Lx5 LINE L1 0 7050 6884 8 836 614 284 151 54 chr3 32989940 32990442 -126609341 - HAL1 LINE L1 -555 1952 1402 8 836 860 275 141 43 chr3 32990688 32991048 -126608735 + Lx8 LINE L1 6981 7383 -90 8 836 222 37 0 0 chr3 32991048 32991075 -126608708 + (TG)n Simple_repeat Simple_repeat 1 27 0 8 836 860 275 141 43 chr3 32991075 32991155 -126608628 + Lx8 LINE L1 7384 7464 -9 8 836 251 274 102 70 chr3 32991819 32991976 -126607807 - RSINE1 SINE B4 0 165 4 8 836 358 178 11 11 chr3 32992059 32992150 -126607633 + (TA)n Simple_repeat Simple_repeat 2 92 0 8 836 387 283 0 0 chr3 32992215 32992321 -126607462 + ORR1D2 LTR MaLR 1 106 -264 8 836 508 225 35 7 chr3 32992310 32992453 -126607330 + ORR1D2 LTR MaLR 222 368 -2 8 836 292 346 25 46 chr3 32992637 32992834 -126606949 + Charlie1a DNA MER1_type 21 213 -1242 8 836 773 320 97 26 chr3 32992847 32993679 -126606104 + Charlie1a DNA MER1_type 480 1395 -60 8 836 234 62 61 20 chr3 32993827 32993876 -126605907 + (TCCC)n Simple_repeat Simple_repeat 2 52 0 9 836 1002 162 0 0 chr3 32993865 32994044 -126605739 + CT-rich Low_complexity Low_complexity 1 179 0 9 836 579 66 0 0 chr3 32995408 32995484 -126604299 + (GGAA)n Simple_repeat Simple_repeat 2 77 0 9 836 270 56 0 0 chr3 32995484 32995520 -126604263 + (GA)n Simple_repeat Simple_repeat 2 37 0 9 836 585 0 0 0 chr3 32995520 32995585 -126604198 + (GAA)n Simple_repeat Simple_repeat 3 67 0 9 836 634 238 11 45 chr3 32995771 32995947 -126603836 + B3 SINE B2 3 172 -44 9 836 821 234 122 81 chr3 32995965 32996300 -126603483 - MTE2a LTR MaLR -30 349 1 9 836 207 171 0 0 chr3 32996703 32996738 -126603045 + A-rich Low_complexity Low_complexity 1 35 0 9 836 381 43 0 0 chr3 32996738 32996785 -126602998 + (GGAA)n Simple_repeat Simple_repeat 3 49 0 9 836 227 356 117 0 chr3 32996855 32997035 -126602748 + MIR SINE MIR 19 219 -43 9 836 205 343 0 0 chr3 32997043 32997113 -126602670 + (TG)n Simple_repeat Simple_repeat 1 70 0 9 836 558 219 55 31 chr3 32997128 32997255 -126602528 - B4 SINE B4 -36 256 127 9 836 240 240 143 48 chr3 32997161 32997266 -126602517 - B1F1 SINE Alu 0 149 35 9 836 212 301 10 41 chr3 32997371 32997468 -126602315 + CT-rich Low_complexity Low_complexity 1 94 0 9 836 246 242 48 0 chr3 32998311 32998373 -126601410 + B1F SINE Alu 14 78 -71 9 836 225 0 0 0 chr3 32998908 32998933 -126600850 + (TAGA)n Simple_repeat Simple_repeat 2 26 0 9 836 477 0 0 0 chr3 32999049 32999102 -126600681 + (TCTA)n Simple_repeat Simple_repeat 4 56 0 9 836 306 0 0 0 chr3 32999118 32999152 -126600631 + (TC)n Simple_repeat Simple_repeat 1 34 0 9 836 30 45 0 0 chr3 32999789 32999833 -126599950 + AT_rich Low_complexity Low_complexity 1 44 0 9 836 181 277 192 8 chr3 33000102 33000222 -126599561 - MIR SINE MIR -32 230 89 1 836 728 161 8 0 chr3 33000313 33000431 -126599352 + PB1D9 SINE Alu 2 120 0 2 836 268 386 29 0 chr3 33001035 33001175 -126598608 - L2c LINE L2 -214 3173 3030 3 836 340 275 111 42 chr3 33001547 33001763 -126598020 - ORR1D2 LTR MaLR -134 236 6 4 836 232 292 152 25 chr3 33002834 33002992 -126596791 - MIR SINE MIR -13 249 72 5 836 853 81 163 0 chr3 33004257 33004380 -126595403 + B1_Mus1 SINE Alu 1 143 -5 6 836 1676 21 0 15 chr3 33004613 33004808 -126594975 + B2_Mm1t SINE B2 2 193 0 7 836 21 71 0 0 chr3 33004808 33004850 -126594933 + AT_rich Low_complexity Low_complexity 1 42 0 8 836 762 205 26 0 chr3 33004887 33005043 -126594740 - B3A SINE B2 -38 160 1 9 836 421 205 25 59 chr3 33005126 33005245 -126594538 - PB1D10 SINE Alu 0 117 3 1 836 1525 209 71 3 chr3 33005838 33005968 -126593815 - ORR1D1 LTR MaLR 0 374 244 1 836 243 0 0 0 chr3 33005968 33005995 -126593788 + (CAGG)n Simple_repeat Simple_repeat 4 30 0 1 836 1525 209 71 3 chr3 33005995 33006214 -126593569 - ORR1D1 LTR MaLR -131 243 2 1 836 656 83 10 0 chr3 33006402 33006498 -126593285 + (TC)n Simple_repeat Simple_repeat 2 98 0 1 836 1092 82 7 20 chr3 33006503 33006653 -126593130 - B1_Mus1 SINE Alu 0 148 1 1 836 884 273 42 9 chr3 33006924 33007205 -126592578 + B4 SINE B4 16 284 -8 1 836 29 28 0 0 chr3 33007929 33007965 -126591818 + AT_rich Low_complexity Low_complexity 1 36 0 1 836 457 299 18 37 chr3 33008054 33008217 -126591566 + Lx5 LINE L1 6593 6752 -708 1 836 311 195 0 25 chr3 33008219 33008298 -126591485 + GA-rich Low_complexity Low_complexity 3 79 0 1 836 2151 239 98 7 chr3 33008298 33008863 -126590920 + Lx5 LINE L1 6455 7032 -18 1 836 26 0 0 0 chr3 33010218 33010244 -126589539 + AT_rich Low_complexity Low_complexity 1 26 0 1 836 535 278 8 16 chr3 33010357 33010485 -126589298 - RSINE1 SINE B4 -21 144 18 2 836 226 237 34 0 chr3 33010486 33010545 -126589238 + RMER15 LTR ERVL 2 62 -513 2 836 1356 120 77 0 chr3 33010560 33010768 -126589015 - URR1B DNA MER1_type 0 225 2 2 836 1505 208 222 7 chr3 33010838 33011288 -126588495 + RMER15 LTR ERVL 29 575 0 2 836 1197 68 0 0 chr3 33011889 33012036 -126587747 + B1_Mus2 SINE Alu 1 147 0 2 836 339 289 11 5 chr3 33012060 33012173 -126587610 + B3A SINE B2 10 125 -70 2 836 227 285 0 68 chr3 33012264 33012456 -126587327 + (GGTTG)n Simple_repeat Simple_repeat 1 179 0 2 836 2008 175 67 44 chr3 33013117 33013553 -126586230 - RLTR41 LTR ERV1 0 446 1 2 836 237 65 0 0 chr3 33017567 33017598 -126582185 + (CAAAA)n Simple_repeat Simple_repeat 3 33 0 2 836 306 0 0 0 chr3 33017751 33017785 -126581998 + (CA)n Simple_repeat Simple_repeat 2 35 0 2 836 387 0 0 0 chr3 33018306 33018349 -126581434 + (TG)n Simple_repeat Simple_repeat 1 43 0 2 836 509 282 70 12 chr3 33018505 33018677 -126581106 + B3A SINE B2 1 182 -16 3 836 615 169 0 0 chr3 33018680 33018828 -126580955 + (CA)n Simple_repeat Simple_repeat 2 149 0 3 836 199 140 17 50 chr3 33019509 33019569 -126580214 + C-rich Low_complexity Low_complexity 1 58 0 3 836 713 317 115 60 chr3 33023686 33024348 -126575435 + MER44D DNA MER2_type 1 698 -7 3 836 1639 44 10 0 chr3 33024856 33025060 -126574723 - L1Md_T LINE L1 -1 6581 6376 3 836 264 340 21 48 chr3 33026400 33026515 -126573268 + B3A SINE B2 58 171 -27 3 836 180 0 0 0 chr3 33026515 33026535 -126573248 + (CAGA)n Simple_repeat Simple_repeat 3 22 0 3 836 264 340 21 48 chr3 33026535 33026564 -126573219 + B3A SINE B2 172 198 0 3 836 268 253 11 33 chr3 33026724 33026814 -126572969 + MTE2a LTR MaLR 278 365 -14 3 836 26 0 0 0 chr3 33026832 33026858 -126572925 + AT_rich Low_complexity Low_complexity 1 26 0 3 836 349 241 24 0 chr3 33027065 33027148 -126572635 + MTE2a LTR MaLR 11 95 -284 3 836 1082 265 50 35 chr3 33027152 33027469 -126572314 + MTE2a LTR MaLR 58 379 0 3 836 328 161 12 12 chr3 33028927 33029009 -126570774 + CT-rich Low_complexity Low_complexity 1 82 0 4 836 540 0 0 0 chr3 33029262 33029322 -126570461 + (GA)n Simple_repeat Simple_repeat 1 60 0 4 836 423 38 0 0 chr3 33029597 33029650 -126570133 + (TG)n Simple_repeat Simple_repeat 1 53 0 4 104 1688 128 130 41 chr3 33029804 33030172 -126569611 + MTC LTR MaLR 13 413 -8 4 837 669 266 17 44 chr3 33030230 33030411 -126569372 + ID_B1 SINE B4 5 180 -44 4 837 3021 44 0 3 chr3 33031090 33031455 -126568328 - L1Md_A LINE L1 0 6582 6219 4 837 457 309 57 42 chr3 33032521 33032852 -126566931 - L1MC4 LINE L1 -222 7820 7485 4 837 486 273 43 0 chr3 33033064 33033203 -126566580 - ID_B1 SINE B4 0 224 80 4 837 217 318 58 58 chr3 33033731 33033868 -126565915 + MIRb SINE MIR 15 151 -117 4 837 207 0 0 0 chr3 33034991 33035014 -126564769 + (TCTG)n Simple_repeat Simple_repeat 4 26 0 4 837 507 117 0 0 chr3 33035037 33035131 -126564652 + (CA)n Simple_repeat Simple_repeat 1 94 0 5 837 2322 207 33 28 chr3 33035392 33035990 -126563793 + RLTR40 LTR ERVK 1 601 -216 5 837 221 0 35 0 chr3 33036668 33036697 -126563086 + (TA)n Simple_repeat Simple_repeat 1 30 0 5 837 264 100 0 0 chr3 33037161 33037201 -126562582 + (A)n Simple_repeat Simple_repeat 1 40 0 5 837 422 282 18 18 chr3 33037271 33037383 -126562400 - PB1D10 SINE Alu -2 115 4 5 837 396 0 0 0 chr3 33039205 33039249 -126560534 + (CA)n Simple_repeat Simple_repeat 2 45 0 5 837 26 101 0 0 chr3 33042165 33042254 -126557529 + GC_rich Low_complexity Low_complexity 1 89 0 5 837 285 273 133 0 chr3 33042607 33042749 -126557034 + L2a LINE L2 3210 3424 -2 5 837 452 178 112 37 chr3 33043470 33043604 -126556179 + MTD LTR MaLR 244 387 -32 5 837 1486 221 26 69 chr3 33043643 33044135 -126555648 - RLTR20A LTR ERVK 0 541 71 5 837 2278 31 14 308 chr3 33044876 33045428 -126554355 + RLTR10 LTR ERVK 1 390 0 6 837 395 226 54 54 chr3 33046662 33046774 -126553009 + MER5A1 DNA MER1_type 48 159 -7 6 837 216 0 0 0 chr3 33047514 33047538 -126552245 + (CAAA)n Simple_repeat Simple_repeat 3 26 0 6 837 581 222 19 106 chr3 33048637 33048798 -126550985 + B4 SINE B4 105 251 -41 6 837 793 201 135 21 chr3 33049102 33049295 -126550488 + B3 SINE B2 1 215 -1 6 837 189 352 76 23 chr3 33049585 33049716 -126550067 + L2b LINE L2 3219 3356 -19 6 837 325 234 0 0 chr3 33049932 33049996 -126549787 + ID4_ SINE ID 3 66 -17 6 837 228 239 21 21 chr3 33050091 33050232 -126549551 + (TATATG)n Simple_repeat Simple_repeat 5 145 0 6 837 28 48 0 0 chr3 33050298 33050340 -126549443 + AT_rich Low_complexity Low_complexity 1 42 0 6 837 324 0 0 0 chr3 33050932 33050968 -126548815 + (TC)n Simple_repeat Simple_repeat 1 36 0 6 837 386 84 28 0 chr3 33050976 33051047 -126548736 + (CAGAGA)n Simple_repeat Simple_repeat 6 78 0 7 837 243 0 0 0 chr3 33052329 33052356 -126547427 + (CAAA)n Simple_repeat Simple_repeat 4 30 0 7 837 609 14 0 0 chr3 33052461 33052531 -126547252 + (TG)n Simple_repeat Simple_repeat 2 71 0 7 837 4225 58 2 0 chr3 33052782 33053296 -126546487 + L1_Mus1 LINE L1 6053 6567 0 7 837 659 202 32 0 chr3 33053307 33053431 -126546352 + B3 SINE B2 1 128 -88 7 837 343 289 73 7 chr3 33054112 33054248 -126545535 + L2 LINE L2 1977 2121 -1298 7 837 187 310 143 26 chr3 33054334 33054523 -126545260 + L2 LINE L2 2270 2480 -939 7 837 917 116 7 0 chr3 33054533 33054679 -126545104 + (TTTC)n Simple_repeat Simple_repeat 2 148 0 7 837 1624 57 0 19 chr3 33054689 33054905 -126544878 - L1_Mus2 LINE L1 0 6566 6355 7 837 3872 47 0 2 chr3 33054905 33055372 -126544411 + L1_Mus2 LINE L1 5720 6185 -381 7 837 217 288 243 13 chr3 33055382 33055621 -126544162 + L2 LINE L2 2513 2806 -613 7 837 569 40 13 0 chr3 33056026 33056102 -126543681 + (TCTA)n Simple_repeat Simple_repeat 4 80 0 7 837 473 32 16 0 chr3 33057191 33057254 -126542529 + (TCTA)n Simple_repeat Simple_repeat 4 67 0 7 837 452 18 0 17 chr3 33057528 33057586 -126542197 + (TCTA)n Simple_repeat Simple_repeat 1 57 0 8 837 698 119 0 27 chr3 33057640 33057787 -126541996 + (TG)n Simple_repeat Simple_repeat 2 144 0 8 837 302 272 0 32 chr3 33058482 33058577 -126541206 + ORR1E LTR MaLR 104 195 -164 8 837 250 318 0 22 chr3 33058687 33058777 -126541006 + ORR1E LTR MaLR 278 365 -14 8 837 581 328 17 6 chr3 33058906 33059087 -126540696 - B4 SINE B4 -98 194 12 8 837 188 88 59 0 chr3 33059462 33059496 -126540287 + (TTAAG)n Simple_repeat Simple_repeat 1 36 0 8 837 245 53 0 50 chr3 33059692 33059732 -126540051 + (CAA)n Simple_repeat Simple_repeat 2 39 0 8 837 837 232 44 10 chr3 33060202 33060407 -126539376 - B3 SINE B2 -4 212 1 8 837 245 179 119 0 chr3 33060580 33060647 -126539136 - B4 SINE B4 -216 76 2 8 837 297 298 62 29 chr3 33060702 33060867 -126538916 + ORR1E LTR MaLR 3 174 -196 8 837 326 367 51 5 chr3 33061364 33061580 -126538203 - MIR SINE MIR -15 247 22 8 837 1723 232 111 29 chr3 33061669 33062145 -126537638 - RMER15 LTR ERVL 0 575 61 9 837 293 174 10 42 chr3 33062755 33062851 -126536932 + CT-rich Low_complexity Low_complexity 4 96 0 9 837 215 125 25 0 chr3 33063317 33063357 -126536426 + (TTC)n Simple_repeat Simple_repeat 2 42 0 9 837 739 196 14 0 chr3 33063779 33063917 -126535866 + B1_Mur3 SINE Alu 2 141 -8 9 837 530 198 11 33 chr3 33063925 33064108 -126535675 + (TATG)n Simple_repeat Simple_repeat 2 180 0 9 837 650 254 25 50 chr3 33065192 33065391 -126534392 + B3A SINE B2 2 195 -3 9 837 228 224 17 17 chr3 33065655 33065714 -126534069 + (CATATA)n Simple_repeat Simple_repeat 6 64 0 9 837 303 28 0 0 chr3 33065715 33065751 -126534032 + (GA)n Simple_repeat Simple_repeat 2 37 0 9 837 336 330 113 21 chr3 33065791 33065977 -126533806 + L1M5 LINE L1 5397 5599 -574 9 837 503 267 97 82 chr3 33066038 33066307 -126533476 - B4A SINE B4 -18 274 2 9 837 266 281 62 0 chr3 33066310 33066438 -126533345 + L1M5 LINE L1 5583 5718 -455 9 837 38098 24 1 7 chr3 33066438 33072613 -126527170 - L1Md_A LINE L1 -2 6580 449 1 837 599 196 152 28 chr3 33076103 33076281 -126523502 - ORR1D2 LTR MaLR 0 370 171 1 837 384 22 0 0 chr3 33076293 33076338 -126523445 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 837 363 125 0 0 chr3 33076338 33076410 -126523373 + (GA)n Simple_repeat Simple_repeat 1 72 0 1 837 594 261 83 0 chr3 33076429 33076586 -126523197 - ORR1D2 LTR MaLR -194 176 7 1 837 2961 218 58 35 chr3 33076588 33077277 -126522506 - ORR1D2-int LTR MaLR 0 1370 666 1 837 379 322 0 40 chr3 33077296 33077417 -126522366 - ORR1D2-int LTR MaLR -940 640 525 1 837 525 270 122 45 chr3 33077417 33077830 -126521953 - RLTR15 LTR ERVK 0 359 3 1 837 2209 213 56 17 chr3 33077832 33078314 -126521469 - ORR1D2-int LTR MaLR -869 501 1 1 837 1138 249 57 6 chr3 33078314 33078666 -126521117 - ORR1D2 LTR MaLR 0 370 1 1 837 620 278 0 8 chr3 33078804 33078938 -126520845 + B1F SINE Alu 10 142 -7 1 837 656 283 58 40 chr3 33079020 33079174 -126520609 + B3A SINE B2 7 169 -29 1 837 375 23 0 0 chr3 33079174 33079218 -126520565 + (TC)n Simple_repeat Simple_repeat 1 44 0 1 837 594 41 0 0 chr3 33079218 33079290 -126520493 + (CA)n Simple_repeat Simple_repeat 1 73 0 1 837 2778 176 66 18 chr3 33079290 33079835 -126519948 - RMER15 LTR ERVL 0 575 5 1 837 656 271 63 72 chr3 33079835 33079885 -126519898 + B3A SINE B2 166 209 -7 1 837 184 296 0 0 chr3 33080005 33080049 -126519734 + MIR SINE MIR 218 261 -1 1 837 221 282 48 157 chr3 33080050 33080197 -126519586 - MIR3 SINE MIR -45 163 33 1 837 263 131 86 14 chr3 33080851 33080921 -126518862 + Lx9 LINE L1 7569 7643 -1 1 837 254 325 65 6 chr3 33081360 33081530 -126518253 + L1ME3A LINE L1 2056 2235 -4007 1 837 395 321 70 25 chr3 33081603 33081887 -126517896 + L1ME3A LINE L1 3967 4263 -1883 1 837 1135 272 32 100 chr3 33082505 33082946 -126516837 + MTD LTR MaLR 9 419 0 1 837 8832 94 58 9 chr3 33082971 33084480 -126515303 - Lx3C LINE L1 -1012 5964 4383 1 837 4841 157 52 26 chr3 33084485 33085420 -126514363 + Lx3C LINE L1 6003 6962 -14 1 837 256 249 203 6 chr3 33085564 33085746 -126514037 + L1ME3A LINE L1 5256 5473 -971 1 837 1349 222 149 7 chr3 33086000 33086417 -126513366 - Lx2B LINE L1 -22 6978 6503 1 837 311 365 77 0 chr3 33086559 33086729 -126513054 + L1ME3A LINE L1 5814 5996 -177 1 837 474 18 0 0 chr3 33087328 33087383 -126512400 + (GA)n Simple_repeat Simple_repeat 2 56 0 1 837 360 0 0 0 chr3 33087419 33087459 -126512324 + (CA)n Simple_repeat Simple_repeat 1 40 0 1 837 591 27 0 0 chr3 33087459 33087531 -126512252 + (GA)n Simple_repeat Simple_repeat 2 74 0 1 837 396 256 6 11 chr3 33087770 33087944 -126511839 + (CA)n Simple_repeat Simple_repeat 2 174 0 1 837 335 181 14 27 chr3 33087959 33088033 -126511750 + HAL1-3A_ME LINE L1 1973 2045 -813 1 837 499 320 142 46 chr3 33088138 33088462 -126511321 - ORR1E LTR MaLR 0 359 5 1 837 422 211 120 0 chr3 33088847 33088989 -126510794 + Lx9 LINE L1 7354 7512 -132 1 837 226 191 0 21 chr3 33088995 33089043 -126510740 + (TCTA)n Simple_repeat Simple_repeat 4 50 0 1 837 230 143 20 0 chr3 33089046 33089095 -126510688 + CT-rich Low_complexity Low_complexity 3 52 0 1 837 6547 236 54 13 chr3 33089974 33091884 -126507899 + Lx7 LINE L1 5420 7416 -280 1 837 189 171 0 0 chr3 33091918 33091953 -126507830 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1 837 327 221 0 0 chr3 33092150 33092236 -126507547 + (TG)n Simple_repeat Simple_repeat 2 87 0 1 837 5238 142 20 6 chr3 33092252 33093113 -126506670 + Lx2 LINE L1 6125 6997 0 1 837 442 289 134 105 chr3 33093700 33093909 -126505874 - B3A SINE B2 0 216 2 1 837 389 20 20 0 chr3 33094007 33094057 -126505726 + (TG)n Simple_repeat Simple_repeat 1 51 0 1 837 1131 152 117 0 chr3 33095146 33095343 -126504440 + URR1A DNA MER1_type 5 224 -2 1 837 471 294 59 0 chr3 33095730 33095866 -126503917 + B1F SINE Alu 1 144 -5 1 837 192 40 0 0 chr3 33095883 33095908 -126503875 + (CA)n Simple_repeat Simple_repeat 2 26 0 1 837 44 35 0 0 chr3 33095997 33096055 -126503728 + AT_rich Low_complexity Low_complexity 1 58 0 1 837 522 0 0 0 chr3 33097036 33097094 -126502689 + (CA)n Simple_repeat Simple_repeat 1 58 0 1 837 506 312 38 43 chr3 33097126 33097498 -126502285 + L1MC3 LINE L1 12 381 -5664 1 837 456 291 17 54 chr3 33097744 33097984 -126501799 + L1MC1 LINE L1 6101 6331 -2 1 837 484 375 44 24 chr3 33098356 33098654 -126501129 + L1MC3 LINE L1 2661 2964 -3600 1 837 579 294 145 16 chr3 33098684 33099119 -126500664 + L1MC3 LINE L1 5827 6317 -1886 1 837 520 271 8 23 chr3 33099578 33099710 -126500073 + ID_B1 SINE B4 86 215 -9 1 837 267 198 89 99 chr3 33099779 33099880 -126499903 + L1_Rod LINE L1 3437 3536 -2311 1 837 36885 6 0 0 chr3 33099905 33105282 -126494501 + L1Md_A LINE L1 208 5586 -297 1 837 8935 5 2 0 chr3 33105282 33106276 -126493507 + L1Md_A LINE L1 5587 6582 0 1 837 331 194 0 0 chr3 33106289 33106356 -126493427 - Lx5 LINE L1 -695 6355 6289 1 837 320 288 38 0 chr3 33106940 33107072 -126492711 - L1M4 LINE L1 -981 5165 5029 1 837 21 36 0 0 chr3 33107541 33107569 -126492214 + AT_rich Low_complexity Low_complexity 1 28 0 1 837 412 310 9 0 chr3 33108088 33108204 -126491579 - PB1D10 SINE Alu 0 117 1 1 837 343 82 0 20 chr3 33108504 33108554 -126491229 + HAL1-3A_ME LINE L1 1969 2017 -841 1 837 375 328 0 8 chr3 33108562 33108685 -126491098 + (CATA)n Simple_repeat Simple_repeat 4 125 0 1 837 683 249 171 12 chr3 33108720 33109047 -126490736 + MTD LTR MaLR 27 405 -14 1 837 271 253 12 30 chr3 33109069 33109236 -126490547 + (CATA)n Simple_repeat Simple_repeat 4 167 0 1 837 291 341 8 8 chr3 33109238 33109368 -126490415 + (CA)n Simple_repeat Simple_repeat 2 131 0 1 837 303 341 0 16 chr3 33111160 33111288 -126488495 - PB1 SINE Alu -1 126 1 1 837 382 354 105 58 chr3 33111354 33111612 -126488171 + MLT1K LTR MaLR 5 274 -321 1 837 220 195 73 0 chr3 33111762 33111844 -126487939 + (TAGA)n Simple_repeat Simple_repeat 2 89 0 1 837 216 0 0 0 chr3 33113049 33113073 -126486710 + (CAAAA)n Simple_repeat Simple_repeat 1 24 0 1 837 21 36 0 0 chr3 33114034 33114062 -126485721 + AT_rich Low_complexity Low_complexity 1 28 0 1 837 1557 247 46 8 chr3 33114311 33114662 -126485121 + MTE2a LTR MaLR 16 379 0 1 837 531 250 71 38 chr3 33114673 33114856 -126484927 - ORR1E LTR MaLR -170 189 1 1 837 442 109 0 0 chr3 33115078 33115142 -126484641 - RLTR11A2 LTR ERVK -463 64 1 1 837 1351 210 40 11 chr3 33115142 33115417 -126484366 + ORR1D1 LTR MaLR 92 374 0 1 837 429 276 90 90 chr3 33116396 33116619 -126483164 + LTR33A_ LTR ERVL 7 245 -286 1 837 318 26 0 0 chr3 33117657 33117696 -126482087 + (TG)n Simple_repeat Simple_repeat 1 39 0 1 837 981 74 0 0 chr3 33117696 33117843 -126481940 + (GA)n Simple_repeat Simple_repeat 1 148 0 1 837 314 351 96 32 chr3 33118648 33118898 -126480885 + LTR84b LTR ERVL 1 266 -495 1 837 462 18 0 0 chr3 33118904 33118959 -126480824 + (TG)n Simple_repeat Simple_repeat 1 55 0 1 837 433 335 33 85 chr3 33119288 33119595 -126480188 + B4A SINE B4 1 291 -1 1 837 279 331 42 84 chr3 33119696 33119839 -126479944 + MIR3 SINE MIR 50 184 -24 1 837 251 203 68 20 chr3 33120306 33120452 -126479331 + (TA)n Simple_repeat Simple_repeat 2 154 0 1 837 773 239 55 6 chr3 33120977 33121141 -126478642 + B3A SINE B2 2 173 -25 1 837 311 0 26 0 chr3 33121146 33121185 -126478598 + (CA)n Simple_repeat Simple_repeat 1 40 0 1 837 27 0 0 0 chr3 33121185 33121212 -126478571 + AT_rich Low_complexity Low_complexity 1 27 0 1 837 805 271 19 5 chr3 33122865 33123073 -126476710 + B4 SINE B4 1 211 -81 1 837 5062 162 30 80 chr3 33123648 33125164 -126474619 + Lx5 LINE L1 889 2395 -3482 1 837 299 163 20 0 chr3 33125164 33125213 -126474570 - RLTR25B LTR ERVK -976 52 3 1 837 2304 122 55 5 chr3 33125213 33125593 -126474190 + Lx5 LINE L1 5317 5715 -162 1 837 3100 174 6 6 chr3 33125593 33126124 -126473659 + RLTR20B1 LTR ERVK 1 531 -32 1 837 432 55 0 0 chr3 33126179 33126234 -126473549 + (TAGA)n Simple_repeat Simple_repeat 4 58 0 1 837 3475 162 181 16 chr3 33126234 33127353 -126472430 + Lx5 LINE L1 5742 7046 -4 1 837 22 0 0 0 chr3 33127354 33127376 -126472407 + AT_rich Low_complexity Low_complexity 1 22 0 1 837 525 259 51 15 chr3 33128020 33128157 -126471626 + ORR1D2 LTR MaLR 1 142 -228 1 837 8233 126 22 56 chr3 33128240 33129749 -126470034 - Lx4A LINE L1 -1 7057 5601 1 837 1363 195 114 6 chr3 33129749 33130099 -126469684 - BGLII_B LTR ERVK 0 441 54 1 837 24 0 0 0 chr3 33130099 33130123 -126469660 + AT_rich Low_complexity Low_complexity 1 24 0 1 837 8875 121 19 4 chr3 33130125 33132691 -126467092 - Lx3A LINE L1 -7 6974 4366 1 837 792 92 0 0 chr3 33132697 33132816 -126466967 - L1_Mur2 LINE L1 -4488 1389 1271 1 837 549 44 0 0 chr3 33132816 33132884 -126466899 + (TG)n Simple_repeat Simple_repeat 2 69 0 1 837 3630 190 40 29 chr3 33132884 33134132 -126465651 - Lx3A LINE L1 -3825 2055 859 1 837 253 316 52 36 chr3 33134196 33134504 -126465279 - Lx3A LINE L1 -7089 639 152 1 837 1235 258 33 81 chr3 33134568 33134965 -126464818 - MTE2b LTR MaLR 0 379 2 1 837 271 231 115 44 chr3 33134989 33135102 -126464681 - MLT1A1 LTR MaLR 0 408 288 1 837 20543 37 5 9 chr3 33136654 33138376 -126461407 - L1Md_F2 LINE L1 -1 6581 4877 1 837 4483 45 2 0 chr3 33138376 33138914 -126460869 + L1Md_T LINE L1 6044 6582 0 1 837 20543 31 6 15 chr3 33138914 33140550 -126459233 - L1Md_F2 LINE L1 -1007 4876 3246 1 837 271 247 70 12 chr3 33140964 33141050 -126458733 - MER103 DNA DNA -43 123 33 1 837 495 48 0 0 chr3 33141753 33141815 -126457968 + (TA)n Simple_repeat Simple_repeat 2 63 0 1 837 4225 52 39 2 chr3 33141815 33142359 -126457424 - L1Md_F2 LINE L1 -14 6568 6005 1 837 36251 30 1 1 chr3 33142366 33149215 -126450568 - L1Md_T LINE L1 0 6585 1 1 837 1934 40 4 0 chr3 33149216 33149468 -126450315 - L1Md_F2 LINE L1 -564 6018 5766 1 837 13708 40 3 1 chr3 33149470 33151214 -126448569 + L1Md_F2 LINE L1 4025 5772 -111 1 837 1039 109 0 13 chr3 33151248 33151397 -126448386 + B1_Mus1 SINE Alu 2 148 0 1 837 234 0 0 0 chr3 33151402 33151428 -126448355 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 1 837 1258 263 25 22 chr3 33151444 33151848 -126447935 - Lx9 LINE L1 -230 7414 7010 1 837 666 37 0 0 chr3 33151925 33152006 -126447777 + (CA)n Simple_repeat Simple_repeat 1 81 0 1 837 21 82 0 0 chr3 33152192 33152241 -126447542 + AT_rich Low_complexity Low_complexity 1 49 0 1 837 303 256 94 137 chr3 33152901 33153137 -126446646 - MTEb LTR MaLR -6 373 125 1 837 237 283 142 20 chr3 33153361 33153509 -126446274 + MLT1A LTR MaLR 23 188 -186 1 837 681 328 53 25 chr3 33155014 33155451 -126444332 + Lx9 LINE L1 6876 7458 -186 1 837 1796 251 21 8 chr3 33155648 33156034 -126443749 + MTD LTR MaLR 18 408 -11 2 837 4437 72 3 2 chr3 33156326 33156895 -126442888 + L1_Mus3 LINE L1 6062 6631 -7 2 837 797 280 87 42 chr3 33157054 33157544 -126442239 - L1MA6 LINE L1 -129 6174 5662 2 837 695 311 88 5 chr3 33157543 33157985 -126441798 - L1M3f LINE L1 -3462 2863 2385 2 837 915 51 0 0 chr3 33158337 33158454 -126441329 + (TG)n Simple_repeat Simple_repeat 2 118 0 2 837 545 268 21 14 chr3 33158460 33158604 -126441179 - RSINE1 SINE B4 -19 146 2 2 837 348 241 92 0 chr3 33158604 33158691 -126441092 - B4A SINE B4 -196 96 2 2 837 271 242 0 0 chr3 33158762 33158828 -126440955 - L1M3f LINE L1 -4122 1206 1141 2 837 21 0 0 0 chr3 33159522 33159543 -126440240 + AT_rich Low_complexity Low_complexity 1 21 0 2 837 987 129 57 29 chr3 33159543 33159718 -126440065 - B2_Mm2 SINE B2 -14 181 2 2 837 1870 149 50 3 chr3 33160263 33160565 -126439218 + ORR1B1 LTR MaLR 79 394 0 2 838 751 72 9 9 chr3 33162087 33162199 -126437584 + (TTTC)n Simple_repeat Simple_repeat 1 112 0 2 838 245 146 21 0 chr3 33162495 33162543 -126437240 + (TA)n Simple_repeat Simple_repeat 1 49 0 2 838 533 312 51 3 chr3 33162995 33163336 -126436447 + L1MB2 LINE L1 5566 5931 -252 2 838 586 321 93 23 chr3 33163339 33163553 -126436230 + B4 SINE B4 57 285 -7 2 838 207 151 0 70 chr3 33163639 33163696 -126436087 + A-rich Low_complexity Low_complexity 1 53 0 2 838 1620 259 24 46 chr3 33163737 33163873 -126435910 + MTD LTR MaLR 1 134 -285 2 838 1138 108 37 21 chr3 33163873 33164062 -126435721 + B2_Mm2 SINE B2 4 195 0 2 838 1620 259 24 46 chr3 33164062 33164338 -126435445 + MTD LTR MaLR 135 404 -15 2 838 1706 274 67 35 chr3 33164351 33164883 -126434900 + MTD-int LTR MaLR 1 880 -700 2 838 911 285 23 15 chr3 33165256 33165516 -126434267 + ORR1D2 LTR MaLR 1 262 -108 2 838 450 0 0 0 chr3 33165573 33165623 -126434160 + (CA)n Simple_repeat Simple_repeat 2 51 0 2 838 1821 268 125 6 chr3 33165782 33166440 -126433343 - Lx9 LINE L1 -469 7175 6440 2 838 28 29 0 0 chr3 33167145 33167180 -126432603 + AT_rich Low_complexity Low_complexity 1 35 0 2 838 24 32 0 0 chr3 33167308 33167339 -126432444 + AT_rich Low_complexity Low_complexity 1 31 0 2 838 27 29 0 0 chr3 33168117 33168151 -126431632 + AT_rich Low_complexity Low_complexity 1 34 0 2 838 267 260 128 83 chr3 33169161 33169270 -126430513 + RSINE1 SINE B4 13 126 -39 2 838 483 278 55 8 chr3 33169891 33170018 -126429765 - RSINE1 SINE B4 -15 150 18 2 838 206 315 66 90 chr3 33170932 33171054 -126428729 - L2c LINE L2 -2 3385 3267 2 838 403 281 174 82 chr3 33171478 33171772 -126428011 - ORR1E LTR MaLR -38 321 1 2 838 387 0 0 0 chr3 33172000 33172043 -126427740 + (CA)n Simple_repeat Simple_repeat 1 43 0 2 838 14057 218 83 80 chr3 33172056 33174294 -126425489 - Lx4A LINE L1 -127 6931 4632 2 838 198 0 0 0 chr3 33174294 33174316 -126425467 + (TTG)n Simple_repeat Simple_repeat 3 24 0 2 838 14057 204 59 125 chr3 33174316 33175333 -126424450 - Lx4A LINE L1 -1249 4631 3731 2 838 2875 81 10 13 chr3 33175333 33175722 -126424061 + RLTR10 LTR ERVK 1 388 -2 2 838 14057 204 59 125 chr3 33175722 33176924 -126422859 - Lx4A LINE L1 -2150 3730 2902 2 838 2913 22 28 0 chr3 33176924 33177242 -126422541 + IAPLTR2b LTR ERVK 1 327 0 2 838 14057 204 59 125 chr3 33177242 33177878 -126421905 - Lx4A LINE L1 -2979 2901 2070 2 838 396 0 0 0 chr3 33177878 33177922 -126421861 + (TG)n Simple_repeat Simple_repeat 2 45 0 2 838 14057 199 61 68 chr3 33177922 33178998 -126420785 - Lx4A LINE L1 -3811 2069 892 2 838 915 234 53 56 chr3 33179247 33179550 -126420233 - L1MA6 LINE L1 -466 5834 5533 2 838 2489 114 159 5 chr3 33181370 33181759 -126418024 + RLTR44B LTR ERVK 1 449 0 2 838 1080 171 36 0 chr3 33181759 33181952 -126417831 + RLTR44-int LTR ERVK 1 200 -2612 2 838 6639 177 22 42 chr3 33181955 33184624 -126415159 + RLTR44-int LTR ERVK 659 2812 0 2 838 2402 113 181 5 chr3 33184624 33185006 -126414777 + RLTR44B LTR ERVK 1 449 0 2 838 401 260 19 0 chr3 33185058 33185162 -126414621 - RMER30 DNA MER1_type 0 202 97 2 838 299 25 25 0 chr3 33185393 33185433 -126414350 + (TG)n Simple_repeat Simple_repeat 2 42 0 2 838 264 315 125 75 chr3 33185745 33185865 -126413918 - RSINE1 SINE B4 -36 129 4 2 838 490 272 172 68 chr3 33186281 33186502 -126413281 + ORR1D1 LTR MaLR 4 247 -127 2 838 621 227 4 125 chr3 33186490 33186722 -126413061 + ORR1D2 LTR MaLR 158 361 -9 2 838 614 282 170 24 chr3 33187187 33187434 -126412349 + B4A SINE B4 1 283 -9 2 838 420 284 87 0 chr3 33187923 33188050 -126411733 - MER20 DNA MER1_type -47 172 35 2 838 338 337 123 48 chr3 33188078 33188436 -126411347 - MLT1G3 LTR MaLR -204 391 7 2 838 330 283 50 0 chr3 33189482 33189602 -126410181 - RMER15 LTR ERVL -42 533 408 2 838 186 43 0 0 chr3 33190215 33190238 -126409545 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2 838 762 281 25 5 chr3 33190283 33190480 -126409303 + B3 SINE B2 1 201 -15 2 838 332 94 19 0 chr3 33191087 33191140 -126408643 + (TCC)n Simple_repeat Simple_repeat 3 56 0 2 838 731 112 0 8 chr3 33191151 33191268 -126408515 + (TTTC)n Simple_repeat Simple_repeat 4 119 0 2 838 205 128 51 0 chr3 33192551 33192590 -126407193 + GA-rich Low_complexity Low_complexity 1 41 0 2 838 779 309 28 45 chr3 33193227 33193358 -126406425 - L1MA6 LINE L1 0 6300 6174 2 838 417 39 0 0 chr3 33193358 33193409 -126406374 + (TCTA)n Simple_repeat Simple_repeat 4 54 0 2 838 1253 56 0 0 chr3 33193410 33193552 -126406231 - B1_Mus1 SINE Alu -5 143 2 2 838 779 309 28 45 chr3 33193552 33193845 -126405938 - L1MA6 LINE L1 -127 6173 5881 2 838 420 71 10 58 chr3 33194081 33194185 -126405598 + (CAAAA)n Simple_repeat Simple_repeat 2 100 0 2 838 214 254 0 17 chr3 33194228 33194288 -126405495 + CT-rich Low_complexity Low_complexity 4 62 0 2 838 507 60 0 0 chr3 33194309 33194376 -126405407 + (TCCC)n Simple_repeat Simple_repeat 4 70 0 2 838 586 296 0 66 chr3 33195330 33195473 -126404310 + RSINE1 SINE B4 3 137 -28 2 838 201 121 0 0 chr3 33195473 33195506 -126404277 + (TGAA)n Simple_repeat Simple_repeat 3 35 0 2 838 429 348 11 34 chr3 33196950 33197212 -126402571 + L1M2 LINE L1 2426 2681 -3462 2 838 345 303 11 53 chr3 33197320 33197414 -126402369 + PB1D10 SINE Alu 5 94 -23 2 838 576 130 0 0 chr3 33197471 33197563 -126402220 + (GGGA)n Simple_repeat Simple_repeat 2 93 0 2 838 22 35 0 0 chr3 33198600 33198629 -126401154 + AT_rich Low_complexity Low_complexity 1 29 0 2 838 960 120 0 51 chr3 33198629 33198787 -126400996 - L1_Mus2 LINE L1 0 6566 6417 2 838 258 296 73 45 chr3 33198955 33199132 -126400651 + LTR37B LTR ERV1 198 379 -89 2 838 2752 199 10 8 chr3 33199536 33200027 -126399756 + RMER19C LTR ERVK 120 611 0 2 838 923 260 51 107 chr3 33200028 33200173 -126399610 + Lx8 LINE L1 4837 4949 -898 2 838 609 220 191 33 chr3 33200173 33200356 -126399427 + B3 SINE B2 5 216 0 2 838 923 260 51 107 chr3 33200356 33200744 -126399039 + Lx8 LINE L1 4950 5340 -507 2 838 1350 283 38 27 chr3 33200739 33201215 -126398568 + Lx9 LINE L1 7076 7556 -88 2 838 2483 312 84 44 chr3 33201219 33201369 -126398414 + Lx8 LINE L1 5647 5794 -1679 2 838 693 278 35 30 chr3 33201369 33201566 -126398217 + B3A SINE B2 1 198 0 2 838 2483 312 84 44 chr3 33201566 33202110 -126397673 + Lx8 LINE L1 5795 6364 -1109 2 838 309 26 0 0 chr3 33202110 33202148 -126397635 + (CA)n Simple_repeat Simple_repeat 2 39 0 2 838 2483 312 84 44 chr3 33202148 33202781 -126397002 + Lx8 LINE L1 6365 7028 -445 2 838 211 292 0 0 chr3 33202914 33202962 -126396821 - L2c LINE L2 -49 3338 3291 2 838 21 36 0 0 chr3 33203116 33203144 -126396639 + AT_rich Low_complexity Low_complexity 1 28 0 2 838 231 36 0 0 chr3 33203540 33203568 -126396215 + (CAAA)n Simple_repeat Simple_repeat 3 30 0 2 838 739 319 77 52 chr3 33203778 33204218 -126395565 + MLT1C LTR MaLR 8 458 -9 2 838 898 200 109 16 chr3 33204862 33205055 -126394728 + B3 SINE B2 1 211 -5 2 838 2049 224 51 157 chr3 33205918 33206601 -126393182 + RMER19C LTR ERVK 1 611 0 2 838 195 240 20 20 chr3 33207398 33207449 -126392334 - MIRc SINE MIR -144 124 74 2 838 530 165 10 0 chr3 33208939 33209042 -126390741 + CT-rich Low_complexity Low_complexity 2 105 0 2 838 437 320 82 44 chr3 33209446 33209629 -126390154 + MLT1B LTR MaLR 1 190 -200 2 838 313 289 13 0 chr3 33209658 33209734 -126390049 + MLT1B LTR MaLR 298 374 -16 2 838 252 312 104 37 chr3 33210160 33210323 -126389460 + MLT2B4 LTR ERVL 13 186 -370 2 838 289 315 61 19 chr3 33210369 33210540 -126389243 + MLT2B4 LTR ERVL 213 520 -36 2 838 371 194 0 11 chr3 33210541 33210635 -126389148 + (CA)n Simple_repeat Simple_repeat 1 93 0 2 838 261 16 30 76 chr3 33212446 33212468 -126387315 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2 838 1250 75 0 0 chr3 33212468 33212615 -126387168 - B1_Mus2 SINE Alu 0 147 1 2 838 261 16 30 76 chr3 33212615 33212658 -126387125 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 2 838 186 374 40 10 chr3 33213124 33213224 -126386559 + MIRb SINE MIR 89 191 -77 2 838 641 283 88 88 chr3 33213839 33214250 -126385533 - MER113 DNA MER1_type -12 509 99 2 838 6201 83 25 1 chr3 33216450 33217254 -126382529 + L1_Mus3 LINE L1 5813 6635 -3 2 838 669 41 31 0 chr3 33217482 33217579 -126382204 + (TAGA)n Simple_repeat Simple_repeat 3 102 0 2 838 327 337 26 56 chr3 33217716 33217911 -126381872 + RMER4A LTR ERVK 4 192 -274 2 838 463 373 165 33 chr3 33218191 33218524 -126381259 - MER21B LTR ERV1 -425 438 62 2 838 2060 165 26 59 chr3 33218529 33218634 -126381149 - ORR1C1 LTR MaLR 0 378 273 2 838 315 71 0 0 chr3 33218634 33218676 -126381107 + (CAT)n Simple_repeat Simple_repeat 1 42 0 2 838 2060 165 26 59 chr3 33218676 33218957 -126380826 - ORR1C1 LTR MaLR -106 272 6 2 838 4856 209 53 50 chr3 33218958 33219136 -126380647 - ORR1C1-int LTR MaLR -16 1354 1192 2 838 3594 53 2 0 chr3 33219136 33219552 -126380231 + L1_Mus1 LINE L1 6151 6567 0 2 838 4856 209 53 50 chr3 33219552 33220554 -126379229 - ORR1C1-int LTR MaLR -179 1191 170 2 838 3868 30 4 122 chr3 33220554 33221093 -126378690 - IAPLTR2_Mm LTR ERVK 0 475 1 2 838 6578 51 13 12 chr3 33221095 33221923 -126377860 - IAPEz-int LTR ERVK -2 6479 5651 2 838 2697 70 0 3 chr3 33221916 33222259 -126377524 - IAPEz-int LTR ERVK -4781 1700 1359 2 838 3683 55 1 16 chr3 33222259 33222837 -126376946 - IAPEz-int LTR ERVK -5819 662 168 2 838 228 321 0 0 chr3 33222837 33222890 -126376893 - RLTR27 LTR ERVK -34 275 223 2 838 239 302 0 0 chr3 33222918 33222971 -126376812 - RLTR27 LTR ERVK -34 275 223 2 838 1023 99 99 0 chr3 33222971 33223133 -126376650 - IAPEz-int LTR ERVK -6286 195 18 2 838 581 239 109 35 chr3 33223133 33223173 -126376610 - ORR1C1-int LTR MaLR -1769 194 152 2 838 3855 30 4 122 chr3 33223173 33223712 -126376071 - IAPLTR2_Mm LTR ERVK 0 475 1 2 838 581 206 105 40 chr3 33223712 33223851 -126375932 - ORR1C1-int LTR MaLR -1357 152 1 2 838 2036 172 31 66 chr3 33223851 33224243 -126375540 - ORR1C1 LTR MaLR 0 378 1 2 838 36017 69 1 1 chr3 33224411 33230688 -126369095 + L1Md_F2 LINE L1 275 6554 -28 2 838 549 281 209 13 chr3 33231118 33231352 -126368431 - RMER15 LTR ERVL -2 573 294 2 838 4600 39 0 0 chr3 33232161 33232673 -126367110 - L1Md_F2 LINE L1 -14 6568 6057 2 838 1023 203 0 62 chr3 33233113 33233339 -126366444 + B3 SINE B2 3 214 -2 2 838 287 302 151 71 chr3 33233552 33233916 -126365867 - MLT1D LTR MaLR -9 496 104 3 838 257 250 45 36 chr3 33234134 33234229 -126365554 - L1M2 LINE L1 -2835 4329 4233 3 838 230 27 0 75 chr3 33234229 33234269 -126365514 + (CAAA)n Simple_repeat Simple_repeat 1 37 0 3 838 257 250 45 36 chr3 33234269 33234285 -126365498 - L1M2 LINE L1 -2932 4232 4217 3 838 260 284 34 8 chr3 33234434 33234551 -126365232 + L1_Rod LINE L1 5728 5847 0 3 838 260 19 89 36 chr3 33234870 33234926 -126364857 + (TATAA)n Simple_repeat Simple_repeat 2 60 0 3 838 192 40 0 0 chr3 33235000 33235025 -126364758 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 3 838 853 11 0 0 chr3 33235070 33235164 -126364619 + L1Md_A LINE L1 5493 5586 -297 3 838 9614 3 0 0 chr3 33235164 33236160 -126363623 + L1Md_A LINE L1 5587 6582 0 3 838 250 295 57 10 chr3 33236173 33236365 -126363418 - L1M2 LINE L1 -2997 4167 3967 3 838 504 143 0 0 chr3 33236371 33236455 -126363328 + (GAAA)n Simple_repeat Simple_repeat 2 85 0 3 838 375 285 142 21 chr3 33236538 33236988 -126362795 - L1M2 LINE L1 -3629 3532 3028 3 838 279 79 0 0 chr3 33237004 33237042 -126362741 + (TCCC)n Simple_repeat Simple_repeat 3 40 0 3 838 288 306 53 27 chr3 33237054 33237242 -126362541 - L1M2 LINE L1 -4778 2390 2198 3 838 275 288 91 55 chr3 33237365 33237619 -126362164 - L1M2 LINE L1 -5160 2008 1746 3 838 222 171 0 0 chr3 33238214 33238255 -126361528 + (CA)n Simple_repeat Simple_repeat 2 42 0 3 838 353 225 0 27 chr3 33238255 33238328 -126361455 - B1_Mur2 SINE Alu -34 115 45 3 838 290 88 43 14 chr3 33238607 33238676 -126361107 + (TCTA)n Simple_repeat Simple_repeat 4 74 0 3 838 423 0 0 0 chr3 33238711 33238758 -126361025 + (CA)n Simple_repeat Simple_repeat 2 48 0 3 838 2299 240 60 34 chr3 33238794 33239411 -126360372 - Lx7 LINE L1 -333 7363 6731 3 838 7930 217 79 23 chr3 33239420 33239456 -126360327 - L1_Mur3 LINE L1 -2283 3597 3554 3 838 8539 113 8 6 chr3 33239456 33240635 -126359148 - Lx2 LINE L1 -4 6993 5812 3 838 7930 217 79 23 chr3 33240635 33241544 -126358239 - L1_Mur3 LINE L1 -2327 3553 2653 3 838 279 0 0 0 chr3 33241544 33241575 -126358208 + (TG)n Simple_repeat Simple_repeat 2 32 0 3 838 7930 224 85 30 chr3 33241575 33243082 -126356701 - L1_Mur3 LINE L1 -3228 2652 1019 3 838 5728 129 7 13 chr3 33243082 33243905 -126355878 - Lx2 LINE L1 0 6997 6180 3 838 1020 273 124 79 chr3 33243905 33244019 -126355764 - L1_Mur3 LINE L1 -6710 1018 913 3 838 558 43 0 0 chr3 33244019 33244088 -126355695 + (TC)n Simple_repeat Simple_repeat 1 69 0 3 838 1020 273 124 79 chr3 33244088 33244336 -126355447 - L1_Mur3 LINE L1 -6816 912 610 3 838 220 122 24 0 chr3 33244529 33244570 -126355213 + (TTTG)n Simple_repeat Simple_repeat 3 44 0 3 838 694 321 139 28 chr3 33244613 33245144 -126354639 - L1M3 LINE L1 -1375 4765 4170 3 838 4643 123 33 29 chr3 33245144 33245895 -126353888 - RMER6A LTR ERVK 0 756 3 3 838 694 321 139 28 chr3 33245895 33246117 -126353666 - L1M3 LINE L1 -1971 4169 3928 3 838 487 336 98 0 chr3 33246119 33246262 -126353521 + RSINE1 SINE B4 1 157 -8 3 838 475 276 158 58 chr3 33246286 33246594 -126353189 - L1M3 LINE L1 -2203 3937 3596 3 838 405 0 0 0 chr3 33246594 33246639 -126353144 + (TA)n Simple_repeat Simple_repeat 2 46 0 3 838 475 276 158 58 chr3 33246639 33246741 -126353042 - L1M3 LINE L1 -2545 3595 3486 3 838 830 294 85 68 chr3 33247164 33247996 -126351787 + L1M2 LINE L1 2541 3386 -2757 3 838 1145 168 108 42 chr3 33247997 33248209 -126351574 - URR1A DNA MER1_type 0 226 1 3 838 337 309 45 22 chr3 33248290 33248469 -126351314 + L1MD LINE L1 5284 5466 -2529 3 838 359 273 93 8 chr3 33248488 33248617 -126351166 + L1MC1 LINE L1 5548 5687 -646 3 838 930 237 217 50 chr3 33248628 33249171 -126350612 - MT2B LTR ERVL -47 554 6 3 838 1222 286 79 24 chr3 33249242 33249737 -126350046 + L1MC1 LINE L1 5812 6333 0 3 838 399 21 0 0 chr3 33250244 33250292 -126349491 + (TC)n Simple_repeat Simple_repeat 2 49 0 3 838 284 347 40 32 chr3 33250359 33250484 -126349299 - MIRb SINE MIR -47 221 92 3 838 564 15 0 0 chr3 33251275 33251340 -126348443 + (TATAG)n Simple_repeat Simple_repeat 1 65 0 3 838 581 272 35 0 chr3 33251714 33251883 -126347900 - L1M2 LINE L1 -1424 5421 5247 3 838 270 0 0 0 chr3 33251898 33251928 -126347855 + (TTCC)n Simple_repeat Simple_repeat 3 32 0 3 838 1206 275 134 16 chr3 33251930 33252506 -126347277 - L1M2 LINE L1 -1772 5073 4430 3 838 1192 309 72 19 chr3 33252577 33253062 -126346721 - Lx8 LINE L1 -1 7472 6962 3 838 461 291 85 3 chr3 33253062 33253310 -126346473 - L1M2 LINE L1 -2400 4445 4168 3 838 263 316 128 27 chr3 33253500 33254088 -126345695 - L1M2 LINE L1 -4046 2803 2157 3 838 308 313 38 45 chr3 33254314 33254471 -126345312 - RMER4B LTR ERVK -405 180 25 3 838 441 36 0 0 chr3 33254701 33254756 -126345027 + (TG)n Simple_repeat Simple_repeat 2 56 0 3 838 522 46 0 0 chr3 33254810 33254875 -126344908 + (TC)n Simple_repeat Simple_repeat 2 66 0 3 838 794 120 62 76 chr3 33254875 33255019 -126344764 - B1_Mus1 SINE Alu -6 142 1 3 838 321 47 0 0 chr3 33256258 33256301 -126343482 + (T)n Simple_repeat Simple_repeat 1 43 0 3 838 508 127 0 18 chr3 33256426 33256538 -126343245 + (TG)n Simple_repeat Simple_repeat 2 111 0 3 838 526 222 18 78 chr3 33256890 33257050 -126342733 - ORR1D2 LTR MaLR -30 340 191 3 838 1079 185 24 52 chr3 33257050 33257301 -126342482 - LTRIS5 LTR ERV1 0 447 204 3 838 340 143 48 0 chr3 33257284 33257347 -126342436 - LTRIS5 LTR ERV1 -381 66 1 3 838 878 235 15 20 chr3 33257347 33257539 -126342244 - ORR1D2 LTR MaLR -179 191 1 3 838 203 305 17 17 chr3 33257694 33257754 -126342029 + MIRc SINE MIR 27 86 -182 3 838 1331 251 85 10 chr3 33258226 33258539 -126341244 - MTD LTR MaLR 0 419 85 3 838 294 29 0 0 chr3 33258539 33258574 -126341209 + (TGG)n Simple_repeat Simple_repeat 1 35 0 3 838 1331 251 85 10 chr3 33258574 33258650 -126341133 - MTD LTR MaLR -335 84 1 3 838 2005 295 54 27 chr3 33258653 33259566 -126340217 - L1MB2 LINE L1 -56 6115 5100 3 838 348 274 65 19 chr3 33259963 33260071 -126339712 - LTR40a LTR ERVL -8 454 342 3 838 366 234 59 59 chr3 33260206 33260342 -126339441 - LTR40a LTR ERVL -367 152 17 3 838 273 271 0 0 chr3 33260963 33261022 -126338761 - MER3 DNA MER1_type -150 59 1 3 838 586 271 354 19 chr3 33261074 33261487 -126338296 + RMER15 LTR ERVL 23 574 -1 3 838 1398 152 70 0 chr3 33263772 33264016 -126335767 + ORR1B2 LTR MaLR 107 367 0 3 838 333 0 0 0 chr3 33265087 33265124 -126334659 + (TC)n Simple_repeat Simple_repeat 2 38 0 3 838 351 0 0 0 chr3 33265124 33265162 -126334621 + (TG)n Simple_repeat Simple_repeat 2 40 0 3 838 262 288 0 76 chr3 33265225 33265304 -126334479 - B3A SINE B2 -121 77 5 3 838 331 338 28 21 chr3 33265557 33265699 -126334084 + L1M5 LINE L1 5464 5606 -572 3 838 268 303 30 20 chr3 33266451 33266552 -126333231 + MIRm SINE MIR 53 154 -122 3 838 521 287 147 16 chr3 33266602 33266793 -126332990 + B4 SINE B4 5 220 -72 3 838 228 67 0 0 chr3 33266878 33266908 -126332875 + (CA)n Simple_repeat Simple_repeat 2 31 0 3 838 26 30 0 0 chr3 33266966 33266999 -126332784 + AT_rich Low_complexity Low_complexity 1 33 0 3 838 439 151 11 11 chr3 33267120 33267214 -126332569 + CT-rich Low_complexity Low_complexity 2 95 0 3 838 360 43 0 0 chr3 33267844 33267890 -126331893 + (CA)n Simple_repeat Simple_repeat 2 47 0 3 838 312 83 0 0 chr3 33268015 33268063 -126331720 + (TC)n Simple_repeat Simple_repeat 1 48 0 3 838 390 21 0 0 chr3 33268063 33268110 -126331673 + (TG)n Simple_repeat Simple_repeat 2 48 0 3 838 262 257 14 0 chr3 33269240 33269310 -126330473 + ID4 SINE ID 2 72 -11 3 838 198 0 0 0 chr3 33269677 33269699 -126330084 + (CA)n Simple_repeat Simple_repeat 2 23 0 3 838 243 0 0 0 chr3 33269701 33269728 -126330055 + (TAGA)n Simple_repeat Simple_repeat 3 29 0 3 838 313 294 103 23 chr3 33269793 33269967 -126329816 + MER2 DNA MER2_type 86 273 -72 3 838 302 296 63 8 chr3 33270056 33270182 -126329601 - Tigger7 DNA MER2_type -86 2405 2273 3 838 307 297 50 0 chr3 33270191 33270292 -126329491 + PB1D10 SINE Alu 12 117 0 3 838 563 62 41 0 chr3 33270492 33270589 -126329194 + (TC)n Simple_repeat Simple_repeat 2 102 0 3 838 2016 181 87 20 chr3 33270651 33271052 -126328731 + RMER15 LTR ERVL 1 428 -147 3 838 2358 159 27 12 chr3 33271053 33271454 -126328329 + MTC LTR MaLR 1 407 -14 3 838 495 211 0 22 chr3 33271456 33271548 -126328235 + RMER15 LTR ERVL 486 575 0 3 838 1065 244 64 0 chr3 33271550 33271816 -126327967 - B4 SINE B4 -8 284 2 3 838 321 118 0 0 chr3 33273936 33273987 -126325796 + (TG)n Simple_repeat Simple_repeat 2 52 0 3 838 418 248 18 18 chr3 33274283 33274394 -126325389 - Lx8 LINE L1 -612 6861 6751 3 838 368 287 79 29 chr3 33274636 33274776 -126325007 + RMER20B LTR ERVK 131 277 -350 3 838 324 285 69 97 chr3 33274787 33274835 -126324948 + RMER20B LTR ERVK 463 513 -114 3 838 2417 137 24 78 chr3 33274835 33275248 -126324535 - ORR1B1 LTR MaLR 0 394 4 3 838 324 285 69 97 chr3 33275248 33275343 -126324440 + RMER20B LTR ERVK 514 602 -25 3 838 920 271 118 22 chr3 33275344 33275710 -126324073 + Lx8 LINE L1 7071 7471 -2 3 838 782 248 97 5 chr3 33275771 33275966 -126323817 + B3 SINE B2 4 216 0 3 838 283 211 0 0 chr3 33276111 33276163 -126323620 - Lx8 LINE L1 -191 7282 7231 3 838 261 278 42 0 chr3 33276323 33276395 -126323388 - B4A SINE B4 -133 159 85 3 838 1978 54 4 0 chr3 33277819 33278061 -126321722 + L1_Mus1 LINE L1 6323 6565 -2 3 838 521 267 13 39 chr3 33280612 33280768 -126319015 + B3A SINE B2 6 157 -41 3 838 1031 104 0 0 chr3 33281000 33281135 -126318648 + B1_Mus1 SINE Alu 1 135 -13 3 838 189 0 0 0 chr3 33281135 33281156 -126318627 + (CAAA)n Simple_repeat Simple_repeat 1 21 0 3 838 23 0 0 0 chr3 33282528 33282551 -126317232 + AT_rich Low_complexity Low_complexity 1 23 0 3 838 284 274 12 12 chr3 33283019 33283104 -126316679 + B1F SINE Alu 58 142 -7 3 838 329 162 19 0 chr3 33283147 33283252 -126316531 + (TCTG)n Simple_repeat Simple_repeat 4 110 0 3 838 414 196 0 0 chr3 33283227 33283319 -126316464 + (TG)n Simple_repeat Simple_repeat 1 92 0 3 838 306 325 118 17 chr3 33283812 33284050 -126315733 + Arthur1 DNA Tip100 69 330 -3617 3 838 1475 240 10 39 chr3 33284521 33284941 -126314842 - RMER19C LTR ERVK 0 611 153 3 838 396 220 55 55 chr3 33284962 33285145 -126314638 + RMER17C LTR ERVK 93 275 -135 3 838 21 0 0 0 chr3 33285145 33285166 -126314617 + AT_rich Low_complexity Low_complexity 1 21 0 3 838 941 203 38 97 chr3 33285166 33285433 -126314350 - RMER19C LTR ERVK -360 251 1 3 838 206 250 67 0 chr3 33285656 33285716 -126314067 - MIRc SINE MIR -186 82 19 3 838 3919 5 0 0 chr3 33286060 33286488 -126313295 + L1Md_A LINE L1 6155 6582 0 3 838 461 284 54 16 chr3 33286570 33286699 -126313084 - RSINE1 SINE B4 -29 136 3 3 838 1113 81 11 17 chr3 33287419 33287595 -126312188 + (TCTCCC)n Simple_repeat Simple_repeat 4 178 0 3 838 497 234 15 45 chr3 33287595 33287729 -126312054 - ID_B1 SINE B4 -10 214 85 3 838 3841 210 28 128 chr3 33290291 33291802 -126307981 - RMER1A Other Other -174 856 1 3 104 189 0 0 0 chr3 33292276 33292297 -126307486 + (T)n Simple_repeat Simple_repeat 1 21 0 4 839 1845 188 65 15 chr3 33292360 33292759 -126307024 + MTD LTR MaLR 1 419 0 4 839 1879 233 13 56 chr3 33292806 33293343 -126306440 + RMER5 LTR ERV1 21 534 0 4 839 387 0 0 0 chr3 33294614 33294657 -126305126 + (CA)n Simple_repeat Simple_repeat 2 44 0 4 839 975 207 287 67 chr3 33295589 33296043 -126303740 + MT2B LTR ERVL 1 561 -40 4 839 312 27 0 0 chr3 33296043 33296080 -126303703 + (TA)n Simple_repeat Simple_repeat 2 38 0 4 839 975 207 287 67 chr3 33296080 33296116 -126303667 + MT2B LTR ERVL 562 599 -2 4 839 327 268 122 19 chr3 33297394 33297550 -126302233 + RMER15 LTR ERVL 360 531 -44 4 839 403 228 152 34 chr3 33297778 33297896 -126301887 + RSINE1 SINE B4 2 133 -32 4 839 315 0 0 0 chr3 33297902 33297937 -126301846 + (CA)n Simple_repeat Simple_repeat 2 36 0 4 839 261 0 0 0 chr3 33297938 33297967 -126301816 + (GA)n Simple_repeat Simple_repeat 2 30 0 4 839 330 284 62 16 chr3 33298871 33299000 -126300783 + LTR16C LTR ERVL 350 484 -5 4 839 282 215 29 58 chr3 33299543 33299612 -126300171 + RSINE1 SINE B4 82 148 -17 4 839 303 28 0 0 chr3 33300720 33300756 -126299027 + (TG)n Simple_repeat Simple_repeat 1 36 0 4 839 885 240 173 12 chr3 33300792 33301041 -126298742 - B4 SINE B4 -2 290 2 4 839 522 0 0 0 chr3 33301563 33301621 -126298162 + (TTC)n Simple_repeat Simple_repeat 1 58 0 4 839 4980 162 45 11 chr3 33302825 33303698 -126296085 + RMER19B LTR ERVK 1 902 0 4 839 243 328 0 9 chr3 33305316 33305430 -126294353 + GA-rich Low_complexity Low_complexity 2 114 0 4 839 611 252 301 9 chr3 33305510 33305726 -126294057 + B4 SINE B4 2 280 -12 4 839 351 0 0 0 chr3 33305765 33305804 -126293979 + (CA)n Simple_repeat Simple_repeat 2 40 0 4 839 923 266 119 51 chr3 33307119 33307471 -126292312 - Lx8 LINE L1 -352 7121 6746 4 839 214 175 0 0 chr3 33307953 33307993 -126291790 + B1F SINE Alu 37 76 -73 4 839 28 29 0 0 chr3 33308037 33308072 -126291711 + AT_rich Low_complexity Low_complexity 1 35 0 4 839 297 361 14 36 chr3 33308385 33308523 -126291260 - RSINE1 SINE B4 -30 135 1 4 839 364 276 122 144 chr3 33310198 33310574 -126289209 + MTEb LTR MaLR 1 368 -11 4 839 1204 268 43 92 chr3 33311375 33311843 -126287940 - RLTR18B LTR ERVK -5 507 63 4 839 407 271 11 4 chr3 33313482 33313652 -126286131 + L1MA5 LINE L1 5152 5318 -844 4 839 1452 277 51 11 chr3 33313721 33314192 -126285591 + L1MA5 LINE L1 5447 5936 -364 4 839 202 246 33 0 chr3 33314205 33314266 -126285517 + (TCTG)n Simple_repeat Simple_repeat 4 66 0 4 839 240 122 0 0 chr3 33314639 33314680 -126285103 + (CA)n Simple_repeat Simple_repeat 2 42 0 4 839 564 15 0 0 chr3 33314970 33315035 -126284748 + (TC)n Simple_repeat Simple_repeat 2 66 0 4 839 258 116 0 0 chr3 33315036 33315079 -126284704 + (CA)n Simple_repeat Simple_repeat 2 44 0 4 839 537 121 0 0 chr3 33315103 33315186 -126284597 + (TA)n Simple_repeat Simple_repeat 2 84 0 4 839 768 286 64 78 chr3 33315186 33315639 -126284144 - MT2B LTR ERVL -61 540 1 4 839 585 281 107 13 chr3 33317223 33317522 -126282261 - L1_Mus3 LINE L1 -1812 4331 4005 4 839 643 311 81 50 chr3 33318203 33318577 -126281206 - L1_Mus3 LINE L1 -2149 3994 3597 4 839 189 0 0 0 chr3 33318577 33318598 -126281185 + (TTG)n Simple_repeat Simple_repeat 1 21 0 4 839 17007 121 30 9 chr3 33318598 33322149 -126277634 - L1_Mus3 LINE L1 -4 6634 3150 4 839 17770 54 9 5 chr3 33322147 33323489 -126276294 - L1Md_F2 LINE L1 0 6582 5244 4 839 459 0 0 0 chr3 33323489 33323540 -126276243 + (TA)n Simple_repeat Simple_repeat 2 52 0 4 839 17770 76 12 4 chr3 33323540 33325266 -126274517 - L1Md_F2 LINE L1 -640 5243 3492 4 839 2408 79 81 40 chr3 33325266 33325661 -126274122 - IAPLTR2a LTR ERVK 0 411 1 4 839 6357 31 3 19 chr3 33325661 33326419 -126273364 - IAPEz-int LTR ERVK 0 6481 5736 4 839 2349 50 0 0 chr3 33326418 33326696 -126273087 - IAPEz-int LTR ERVK -4845 1636 1359 4 839 3616 67 4 16 chr3 33326696 33327274 -126272509 - IAPEz-int LTR ERVK -5819 662 168 4 839 226 244 0 0 chr3 33327274 33327319 -126272464 - RLTR27 LTR ERVK -34 275 231 4 839 998 136 15 98 chr3 33327327 33327531 -126272252 - IAPEz-int LTR ERVK -6286 195 9 4 839 2339 114 103 18 chr3 33327532 33327970 -126271813 - IAPLTR2a LTR ERVK 0 475 1 4 839 16610 92 1 1 chr3 33327970 33331303 -126268480 - L1Md_F LINE L1 -2386 3497 163 4 839 5608 129 19 6 chr3 33331307 33332713 -126267070 - L1VL4 LINE L1 -1859 1700 278 4 839 710 261 76 22 chr3 33332728 33333096 -126266687 - L1M2 LINE L1 -2677 4168 3781 4 839 1298 233 151 78 chr3 33333115 33333651 -126266132 + RMER4B LTR ERVK 1 575 -10 4 839 5008 219 52 72 chr3 33333662 33335071 -126264712 + MurERV4-int LTR ERVK 1 1381 -3879 4 839 243 0 45 45 chr3 33335134 33335178 -126264605 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 4 839 259 282 73 45 chr3 33335345 33335751 -126264032 - L1MEf LINE L1 -3316 2564 2147 4 839 372 309 42 24 chr3 33335762 33336146 -126263637 - L1M2 LINE L1 -4320 2529 2138 4 839 366 306 0 113 chr3 33336451 33336602 -126263181 - MTEb LTR MaLR 0 379 246 4 839 1931 158 16 0 chr3 33337694 33338016 -126261767 + Lx2B LINE L1 6671 6997 -3 4 839 1269 240 137 57 chr3 33338447 33338835 -126260948 - MTD LTR MaLR 0 419 1 4 839 234 226 58 117 chr3 33339077 33339197 -126260586 + PB1D7 SINE Alu 1 113 -7 4 839 180 360 198 27 chr3 33340098 33340658 -126259125 + L2 LINE L2 1532 2187 -1232 4 839 360 0 0 0 chr3 33340662 33340702 -126259081 + (TG)n Simple_repeat Simple_repeat 1 40 0 4 839 761 311 39 42 chr3 33340734 33340993 -126258790 - B4 SINE B4 -17 275 18 4 839 218 333 0 24 chr3 33341025 33341108 -126258675 + L2 LINE L2 2205 2285 -1134 4 839 436 328 65 91 chr3 33343049 33343435 -126256348 - MER77 LTR ERVL -227 380 5 4 839 814 245 56 37 chr3 33343700 33343916 -126255867 + RLTR18 LTR ERVK 15 234 -382 4 839 2248 92 115 0 chr3 33343964 33344311 -126255472 - L1_Mus4 LINE L1 -3 6633 6247 4 839 349 82 0 0 chr3 33344311 33344360 -126255423 - L1_Mus4 LINE L1 -495 6141 6093 4 839 5165 120 5 1 chr3 33344354 33345445 -126254338 + L1_Mus4 LINE L1 4967 6064 -572 4 839 1114 261 56 32 chr3 33345445 33345931 -126253852 + RLTR18B LTR ERVK 143 512 0 4 839 311 44 22 0 chr3 33345934 33345979 -126253804 + (CAAA)n Simple_repeat Simple_repeat 2 47 0 4 839 1258 290 61 15 chr3 33346172 33346568 -126253215 + MTD LTR MaLR 6 419 0 4 839 180 0 0 0 chr3 33346579 33346599 -126253184 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 4 839 213 284 15 15 chr3 33346618 33346686 -126253097 + GA-rich Low_complexity Low_complexity 1 68 0 4 839 240 333 111 28 chr3 33346853 33346867 -126252916 + B3 SINE B2 69 84 -132 4 839 2759 91 62 39 chr3 33346867 33347335 -126252448 + L1_Mus3 LINE L1 6158 6636 -2 4 839 240 333 111 28 chr3 33347335 33347428 -126252355 + B3 SINE B2 85 185 -31 4 839 302 65 48 16 chr3 33347428 33347491 -126252292 + (TA)n Simple_repeat Simple_repeat 1 65 0 4 839 2745 39 0 0 chr3 33348859 33349197 -126250586 - ORR1A1 LTR MaLR -8 338 1 4 839 493 186 111 28 chr3 33349290 33349434 -126250349 + L1_Rod LINE L1 4869 5024 -823 4 839 1604 198 51 30 chr3 33349448 33349967 -126249816 + Lx9 LINE L1 7059 7636 -8 4 839 207 0 0 0 chr3 33349984 33350007 -126249776 + (GA)n Simple_repeat Simple_repeat 1 23 0 4 839 3135 55 5 12 chr3 33350259 33350662 -126249121 - MTB LTR MaLR 0 400 1 4 839 6988 82 39 75 chr3 33350662 33351801 -126247982 - MTB-int LTR MaLR 0 1098 1 4 839 863 65 16 8 chr3 33351801 33351926 -126247857 - MTB LTR MaLR 0 396 271 4 839 1524 37 5 5 chr3 33351907 33352099 -126247684 + MTA_Mm LTR MaLR 205 396 0 4 839 305 335 124 10 chr3 33352188 33352381 -126247402 + LTR80B LTR ERVL 135 349 -235 4 839 415 269 93 44 chr3 33353361 33353587 -126246196 + L1MA4 LINE L1 5681 5917 -383 4 839 236 118 39 19 chr3 33355231 33355283 -126244500 + L1VL2 LINE L1 521 573 -5762 4 839 1511 144 3 38 chr3 33355446 33355839 -126243944 + L1VL4 LINE L1 443 823 -5512 4 839 1187 68 0 0 chr3 33355839 33355986 -126243797 + B1_Mm SINE Alu 1 147 0 4 839 941 213 36 45 chr3 33355986 33356045 -126243738 + L1_Mur1 LINE L1 1120 1187 -5795 4 839 720 148 0 0 chr3 33356085 33356220 -126243563 + L1VL4 LINE L1 809 943 -5415 4 839 10042 126 28 31 chr3 33356212 33357089 -126242694 + MusHAL1 LINE L1 393 1247 -1465 4 839 216 0 0 0 chr3 33357089 33357113 -126242670 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 4 839 1040 98 0 0 chr3 33357113 33357246 -126242537 - B1_Mus2 SINE Alu -10 137 5 4 839 10042 126 28 31 chr3 33357246 33358255 -126241528 + MusHAL1 LINE L1 1248 2273 -439 4 839 32183 82 20 3 chr3 33358301 33364445 -126235338 - L1Md_F2 LINE L1 0 6582 355 4 839 12565 156 25 7 chr3 33364448 33367885 -126231898 + Lx2B LINE L1 3492 6999 -1 4 839 224 218 0 0 chr3 33367978 33368033 -126231750 + (TTTG)n Simple_repeat Simple_repeat 2 56 0 4 839 311 239 158 23 chr3 33368330 33368463 -126231320 + L1MC4 LINE L1 6922 7072 -970 4 839 1610 219 236 41 chr3 33369661 33370152 -126229631 - RMER19B LTR ERVK -7 895 309 4 839 438 20 0 0 chr3 33370852 33370903 -126228880 + (TG)n Simple_repeat Simple_repeat 1 51 0 4 839 877 285 94 23 chr3 33371709 33371975 -126227808 - B4A SINE B4 -4 288 4 4 839 994 155 160 5 chr3 33372173 33372367 -126227416 - MTC LTR MaLR -2 419 196 4 839 599 98 0 11 chr3 33372367 33372460 -126227323 + (TTCC)n Simple_repeat Simple_repeat 3 94 0 4 839 1409 222 53 17 chr3 33372462 33372820 -126226963 - Lx6 LINE L1 0 7460 7090 4 839 796 227 33 26 chr3 33372797 33373075 -126226708 - Lx6 LINE L1 -328 7132 6947 4 839 1203 145 14 33 chr3 33373086 33373300 -126226483 - MTC LTR MaLR -211 210 1 4 839 186 365 0 0 chr3 33373640 33373692 -126226091 + L2b LINE L2 3226 3277 -98 4 839 186 382 44 7 chr3 33374154 33374291 -126225492 + MIR SINE MIR 2 143 -119 4 839 216 0 0 0 chr3 33374711 33374735 -126225048 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 4 839 1108 67 0 0 chr3 33374735 33374869 -126224914 - B1_Mm SINE Alu -13 134 1 4 839 254 311 40 0 chr3 33374973 33375047 -126224736 + PB1D7 SINE Alu 42 118 -2 4 839 510 337 63 0 chr3 33375103 33375278 -126224505 + MER5A DNA MER1_type 1 186 -3 4 839 288 248 110 7 chr3 33376766 33376920 -126222863 - L1MC5 LINE L1 -184 7777 7608 4 839 240 239 15 15 chr3 33377270 33377338 -126222445 - L1MC5 LINE L1 -900 7061 6994 4 839 254 169 15 0 chr3 33377366 33377431 -126222352 + CT-rich Low_complexity Low_complexity 1 66 0 4 839 856 203 119 0 chr3 33377924 33378126 -126221657 - URR1A DNA MER1_type 0 226 1 4 839 2750 77 21 13 chr3 33378374 33378756 -126221027 - IAPEY_LTR LTR ERVK 0 385 1 4 839 230 302 9 19 chr3 33378930 33379038 -126220745 - L1MC5 LINE L1 -1129 6832 6726 4 839 21 0 0 0 chr3 33379250 33379271 -126220512 + AT_rich Low_complexity Low_complexity 1 21 0 4 839 21 36 0 0 chr3 33379974 33380002 -126219781 + AT_rich Low_complexity Low_complexity 1 28 0 4 839 26 64 0 0 chr3 33380131 33380178 -126219605 + AT_rich Low_complexity Low_complexity 1 47 0 4 839 408 40 0 0 chr3 33380181 33380231 -126219552 + (TG)n Simple_repeat Simple_repeat 2 51 0 5 839 659 226 8 8 chr3 33380275 33380400 -126219383 - RSINE1 SINE B4 -25 140 16 5 839 180 77 0 0 chr3 33380517 33380543 -126219240 + (CG)n Simple_repeat Simple_repeat 2 27 0 5 839 279 0 0 0 chr3 33380543 33380573 -126219210 + (CA)n Simple_repeat Simple_repeat 1 31 0 5 839 316 319 70 9 chr3 33381984 33382098 -126217685 - ORR1E LTR MaLR -230 129 9 5 839 284 212 15 0 chr3 33382737 33382803 -126216980 - ORR1E LTR MaLR -221 138 72 5 839 2182 140 47 56 chr3 33382981 33383390 -126216393 + RLTR44A LTR ERVK 1 405 0 5 839 2015 164 17 25 chr3 33383589 33383946 -126215837 + ORR1B1 LTR MaLR 41 394 0 5 839 494 252 46 0 chr3 33384003 33384154 -126215629 - L1MB1 LINE L1 -208 5960 5803 5 839 778 312 36 34 chr3 33384166 33384584 -126215199 + L1_Mur3 LINE L1 5114 5532 -348 5 839 6196 136 53 11 chr3 33384584 33385600 -126214183 + Lx4A LINE L1 6000 7058 0 5 839 22 0 0 0 chr3 33385609 33385631 -126214152 + AT_rich Low_complexity Low_complexity 1 22 0 5 839 217 190 35 0 chr3 33385662 33385720 -126214063 + (CAAA)n Simple_repeat Simple_repeat 2 61 0 5 839 2781 30 3 0 chr3 33386276 33386615 -126213168 - ORR1A0 LTR MaLR -6 340 1 5 839 288 0 0 0 chr3 33388643 33388675 -126211108 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 5 839 5863 165 20 19 chr3 33389496 33390665 -126209118 + Lx5 LINE L1 4324 5494 -383 5 839 2689 157 171 95 chr3 33390665 33391284 -126208499 + RMER19A LTR ERVK 3 668 -69 5 839 1818 258 40 19 chr3 33391284 33391755 -126208028 - RLTR16 LTR ERVK 0 505 25 5 839 423 169 13 0 chr3 33391761 33391838 -126207945 + RMER19A LTR ERVK 660 737 0 5 839 7156 190 20 19 chr3 33391838 33393394 -126206389 + Lx5 LINE L1 5487 7049 -1 5 839 942 93 0 0 chr3 33393412 33393551 -126206232 + (GA)n Simple_repeat Simple_repeat 1 139 0 5 839 534 57 0 0 chr3 33393551 33393620 -126206163 + (GGAA)n Simple_repeat Simple_repeat 1 70 0 5 839 4012 103 25 0 chr3 33393806 33394376 -126205407 + MT2B2 LTR ERVL 1 584 0 5 839 2847 148 38 22 chr3 33394812 33395317 -126204466 + RLTR28 LTR ERVL 1 513 -11 5 839 7496 59 3 4 chr3 33395359 33396397 -126203386 - L1Md_F2 LINE L1 -12 6570 5534 5 839 716 178 150 72 chr3 33396397 33396646 -126203137 - ORR1B2 LTR MaLR -43 324 1 5 839 488 327 111 36 chr3 33396671 33397004 -126202779 - MLT1C LTR MaLR -52 415 58 5 839 2844 73 21 5 chr3 33397120 33397507 -126202276 - MTA_Mm LTR MaLR -3 393 1 5 839 277 287 138 3 chr3 33397724 33397871 -126201912 + MER63A DNA AcHobo 1 175 -35 5 839 489 76 0 0 chr3 33399189 33399255 -126200528 + (CA)n Simple_repeat Simple_repeat 2 67 0 5 839 335 239 58 25 chr3 33399264 33399384 -126200399 - L1MA4 LINE L1 -353 5938 5815 5 839 347 0 23 0 chr3 33399385 33399428 -126200355 + (TTTA)n Simple_repeat Simple_repeat 4 47 0 5 839 3538 244 70 64 chr3 33399444 33401005 -126198778 - Lx5 LINE L1 -18 7032 5470 5 839 247 188 30 45 chr3 33401036 33401103 -126198680 - L1_Rod LINE L1 -168 5679 5614 5 839 853 250 4 196 chr3 33401320 33401549 -126198234 - B3 SINE B2 -7 209 10 5 839 241 317 127 42 chr3 33401726 33401963 -126197820 + Charlie25 DNA MER1_type 1505 1761 -763 5 839 801 349 34 38 chr3 33402676 33402941 -126196842 + B4A SINE B4 23 286 -6 5 839 264 59 0 0 chr3 33402961 33402995 -126196788 + (CA)n Simple_repeat Simple_repeat 1 34 0 5 839 994 256 51 29 chr3 33403401 33403692 -126196091 - MTD LTR MaLR -120 280 1 5 839 908 205 64 16 chr3 33403692 33403879 -126195904 + MTD LTR MaLR 211 406 -13 5 839 3150 239 118 48 chr3 33403898 33405068 -126194715 + MTD-int LTR MaLR 4 1255 -3 5 839 550 288 0 0 chr3 33405072 33405218 -126194565 + MTD LTR MaLR 2 147 -272 5 839 1804 238 67 11 chr3 33405344 33405420 -126194363 - RLTR16 LTR ERVK -13 492 414 5 839 405 0 0 0 chr3 33405420 33405465 -126194318 + (CA)n Simple_repeat Simple_repeat 2 46 0 5 839 1804 238 67 11 chr3 33405465 33405852 -126193931 - RLTR16 LTR ERVK -92 413 3 5 839 809 248 128 12 chr3 33405854 33406103 -126193680 + MTD LTR MaLR 142 419 0 5 839 712 282 83 17 chr3 33406105 33406455 -126193328 - L1MC2 LINE L1 -344 6000 5628 5 839 742 268 94 32 chr3 33406487 33406885 -126192898 - L1MC2 LINE L1 -2061 4085 3663 5 839 432 0 0 0 chr3 33407004 33407052 -126192731 + (TC)n Simple_repeat Simple_repeat 1 48 0 5 839 291 54 0 0 chr3 33407052 33407088 -126192695 + (CA)n Simple_repeat Simple_repeat 1 37 0 5 839 4465 170 23 34 chr3 33407160 33408329 -126191454 - ETnERV2-int LTR ERVK -1179 6227 5407 5 839 5027 9 0 2 chr3 33408358 33408921 -126190862 - L1Md_T LINE L1 -12 6570 6009 5 839 5827 11 0 0 chr3 33408921 33409763 -126190020 + L1Md_T LINE L1 5180 6021 -561 5 839 857 112 15 0 chr3 33409763 33409897 -126189886 - ETnERV2-int LTR ERVK -2513 4731 4596 5 839 7694 134 40 6 chr3 33409872 33411293 -126188490 - ETnERV2-int LTR ERVK -3308 4098 2630 5 839 459 0 0 0 chr3 33411297 33411348 -126188435 + (TAGA)n Simple_repeat Simple_repeat 4 54 0 5 839 13467 64 22 0 chr3 33411348 33413906 -126185877 - L1Md_F2 LINE L1 -27 6555 3931 5 839 7862 126 50 10 chr3 33413902 33416017 -126183766 - L1Md_F2 LINE L1 -3479 2404 242 5 839 530 277 23 33 chr3 33416017 33416183 -126183600 + RLTR20B1 LTR ERVK 366 563 0 5 839 459 0 0 0 chr3 33416355 33416406 -126183377 + (TC)n Simple_repeat Simple_repeat 1 51 0 5 839 21 0 0 0 chr3 33416415 33416436 -126183347 + AT_rich Low_complexity Low_complexity 1 21 0 5 839 3934 101 54 7 chr3 33416441 33416999 -126182784 - MT2B2 LTR ERVL 0 584 1 5 839 524 130 0 0 chr3 33417014 33417091 -126182692 - B2_Mm2 SINE B2 -117 78 2 5 839 24 32 0 0 chr3 33417165 33417196 -126182587 + AT_rich Low_complexity Low_complexity 1 31 0 5 839 1067 291 66 41 chr3 33417225 33418004 -126181779 - L1MB4 LINE L1 -213 5967 5180 5 839 522 296 52 47 chr3 33418741 33418954 -126180829 + B3 SINE B2 2 215 -1 5 839 402 74 0 0 chr3 33418991 33419045 -126180738 + (TA)n Simple_repeat Simple_repeat 2 55 0 5 839 1706 211 29 63 chr3 33419147 33419526 -126180257 - ORR1D1 LTR MaLR -3 371 6 5 839 6021 206 33 41 chr3 33419530 33420911 -126178872 - ORR1D1-int LTR MaLR 0 1370 53 5 839 250 308 20 90 chr3 33420929 33421029 -126178754 - ORR1D1 LTR MaLR -281 98 6 5 839 185 143 0 75 chr3 33421487 33421514 -126178269 + A-rich Low_complexity Low_complexity 1 24 0 5 839 1168 75 0 0 chr3 33421514 33421661 -126178122 + B1_Mus2 SINE Alu 1 147 0 5 839 185 143 0 75 chr3 33421661 33421686 -126178097 + A-rich Low_complexity Low_complexity 25 49 0 5 839 265 302 83 9 chr3 33422006 33422115 -126177668 + B1F SINE Alu 2 120 0 5 839 1171 204 99 14 chr3 33422501 33422795 -126176988 - Lx5 LINE L1 -226 6824 6506 5 839 483 299 56 20 chr3 33422789 33422987 -126176796 + Lx6 LINE L1 7210 7414 -46 5 840 1243 14 0 0 chr3 33423490 33423629 -126176154 + B1_Mm SINE Alu 1 139 -8 5 840 673 251 16 59 chr3 33423870 33424056 -126175727 + B3A SINE B2 5 182 -16 5 840 2189 189 47 51 chr3 33424062 33424530 -126175253 + RLTR20B3 LTR ERVK 21 487 -90 5 840 234 0 0 0 chr3 33424530 33424556 -126175227 + (TG)n Simple_repeat Simple_repeat 1 26 0 5 840 630 0 0 0 chr3 33424556 33424625 -126175158 + (GA)n Simple_repeat Simple_repeat 1 70 0 5 840 2189 189 47 51 chr3 33424625 33424686 -126175097 + RLTR20B3 LTR ERVK 488 547 -30 5 840 25 0 0 0 chr3 33424722 33424747 -126175036 + AT_rich Low_complexity Low_complexity 1 25 0 5 840 324 102 0 0 chr3 33424764 33424813 -126174970 + (T)n Simple_repeat Simple_repeat 1 49 0 5 840 326 258 103 41 chr3 33425372 33425469 -126174314 + B3A SINE B2 91 193 -5 5 840 21 36 0 0 chr3 33426905 33426933 -126172850 + AT_rich Low_complexity Low_complexity 1 28 0 5 840 354 285 119 12 chr3 33426997 33427157 -126172626 + Lx6 LINE L1 5982 6158 -1302 5 840 37784 30 2 6 chr3 33427169 33433360 -126166423 - L1Md_T LINE L1 0 6582 422 5 840 5394 214 72 14 chr3 33433356 33434193 -126165590 + Lx6 LINE L1 6145 7030 -430 5 840 2284 120 3 0 chr3 33434193 33434519 -126165264 - ORR1A2 LTR MaLR 0 327 1 5 840 5394 214 72 14 chr3 33434519 33434924 -126164859 + Lx6 LINE L1 7031 7459 -1 5 840 191 116 0 44 chr3 33435384 33435429 -126164354 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 5 840 1234 106 21 5 chr3 33435684 33435874 -126163909 + B2_Mm2 SINE B2 3 195 0 5 840 721 212 0 93 chr3 33435921 33436082 -126163701 + B1_Mur1 SINE Alu 3 148 -1 5 840 229 290 61 0 chr3 33436293 33436363 -126163420 + ID4 SINE ID 4 81 -2 5 840 217 270 0 45 chr3 33436447 33436513 -126163270 + (CATATA)n Simple_repeat Simple_repeat 4 66 0 5 840 195 204 0 0 chr3 33436526 33436570 -126163213 + (TA)n Simple_repeat Simple_repeat 1 44 0 5 840 207 263 226 9 chr3 33438792 33438907 -126160876 - MIR SINE MIR -105 157 18 5 840 181 321 34 115 chr3 33439271 33439419 -126160364 - L2 LINE L2 -1379 2040 1905 5 840 357 24 0 0 chr3 33441226 33441268 -126158515 + (GGAA)n Simple_repeat Simple_repeat 3 44 0 5 840 343 165 126 0 chr3 33442388 33442491 -126157292 + Lx9 LINE L1 7527 7642 -2 5 840 959 274 146 59 chr3 33443162 33443635 -126156148 + MLT2B1 LTR ERVL 1 514 -6 5 840 377 294 41 20 chr3 33443672 33443818 -126155965 + ERVL-B4-int LTR ERVL 64 212 -5502 5 840 253 241 51 0 chr3 33444134 33444213 -126155570 + ERVL-B4-int LTR ERVL 3661 3743 -1971 5 840 31015 82 5 9 chr3 33444734 33449888 -126149895 + L1Md_F2 LINE L1 452 5586 -297 5 840 7727 65 8 1 chr3 33449888 33450876 -126148907 + L1Md_F2 LINE L1 5587 6581 -1 5 840 342 0 0 0 chr3 33451164 33451202 -126148581 + (CA)n Simple_repeat Simple_repeat 2 39 0 5 840 483 261 69 14 chr3 33451281 33451425 -126148358 - MLT1A0 LTR MaLR -2 363 212 5 840 450 315 15 0 chr3 33451446 33451576 -126148207 + B3 SINE B2 39 170 -46 5 840 920 95 7 0 chr3 33451950 33452087 -126147696 + (GAGAA)n Simple_repeat Simple_repeat 4 141 0 5 840 1961 206 15 20 chr3 33452089 33452495 -126147288 - MTD LTR MaLR -1 418 15 5 840 197 214 0 125 chr3 33452664 33452728 -126147055 + MIR SINE MIR 113 168 -94 5 840 950 0 9 0 chr3 33453070 33453180 -126146603 + (TAGA)n Simple_repeat Simple_repeat 1 111 0 5 840 807 334 68 33 chr3 33453602 33454088 -126145695 - Lx8 LINE L1 -238 7235 6733 5 840 296 266 86 25 chr3 33454093 33454174 -126145609 + 4.5SRNA scRNA scRNA 7 92 -2 5 840 21 0 0 0 chr3 33455911 33455932 -126143851 + AT_rich Low_complexity Low_complexity 1 21 0 5 840 635 286 15 87 chr3 33455975 33456170 -126143613 - B3A SINE B2 -16 182 2 5 840 310 289 93 62 chr3 33456752 33456881 -126142902 + HAL1-3A_ME LINE L1 2305 2437 -421 6 840 1246 274 30 3 chr3 33456882 33457182 -126142601 - MTD LTR MaLR -107 312 5 6 840 1008 114 71 12 chr3 33457658 33457827 -126141956 + B2_Mm1t SINE B2 1 179 -14 6 840 747 32 0 0 chr3 33458012 33458106 -126141677 + (TG)n Simple_repeat Simple_repeat 2 95 0 6 840 629 326 89 49 chr3 33458861 33459209 -126140574 + MTEa LTR MaLR 1 362 -17 6 840 2277 85 30 59 chr3 33459998 33460335 -126139448 - ORR1A2 LTR MaLR 0 327 1 6 840 645 282 130 46 chr3 33460345 33460668 -126139115 + ORR1E LTR MaLR 6 355 -4 6 840 1088 173 10 5 chr3 33460733 33460931 -126138852 - Lx6 LINE L1 -2 7458 7260 6 840 25 0 0 0 chr3 33461267 33461292 -126138491 + AT_rich Low_complexity Low_complexity 1 25 0 6 840 1020 136 136 0 chr3 33462472 33462671 -126137112 + URR1A DNA MER1_type 1 226 0 6 840 241 295 51 13 chr3 33463058 33463137 -126136646 + MLT1K LTR MaLR 156 237 -358 6 840 387 202 0 37 chr3 33464579 33464661 -126135122 + ORR1D2 LTR MaLR 292 370 0 6 840 296 311 64 51 chr3 33464661 33464815 -126134968 - ORR1E LTR MaLR -107 252 97 6 840 435 213 125 8 chr3 33464995 33465123 -126134660 - B4A SINE B4 -16 276 134 6 840 599 226 122 30 chr3 33465368 33465532 -126134251 - B3A SINE B2 -16 182 4 6 840 1967 197 53 30 chr3 33467524 33467915 -126131868 + L1_Mur2 LINE L1 789 1192 -5894 6 840 402 21 0 0 chr3 33467915 33467962 -126131821 + (TG)n Simple_repeat Simple_repeat 2 48 0 6 840 6865 142 16 75 chr3 33467962 33469530 -126130253 + L1_Mur2 LINE L1 1193 2667 -3210 6 840 4177 60 6 2 chr3 33469536 33470084 -126129699 + LTRIS_Mus LTR ERV1 1 550 -37 6 840 766 158 26 52 chr3 33470082 33470236 -126129547 - RMER16 LTR ERVK -383 150 1 6 840 2487 124 23 7 chr3 33470236 33470675 -126129108 + L1_Mur2 LINE L1 2684 3129 -2748 6 840 2334 108 189 0 chr3 33470677 33471122 -126128661 - RLTR47_MM LTR ERV1 -2 530 2 6 840 3804 139 14 44 chr3 33471123 33471272 -126128511 + L1_Mur2 LINE L1 3126 3274 -2603 6 840 1210 80 85 11 chr3 33471272 33471432 -126128351 + B2_Mm2 SINE B2 4 161 -34 6 840 416 19 0 19 chr3 33471432 33471486 -126128297 + (TAAA)n Simple_repeat Simple_repeat 1 53 0 6 840 1210 80 85 11 chr3 33471486 33471502 -126128281 + B2_Mm2 SINE B2 162 191 -4 6 840 931 57 123 0 chr3 33471510 33471632 -126128151 + B1_Mus1 SINE Alu 1 137 -11 6 840 210 37 0 0 chr3 33471632 33471659 -126128124 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 6 840 3804 139 14 44 chr3 33471659 33471865 -126127918 + L1_Mur2 LINE L1 3275 3474 -2403 6 840 1114 76 7 0 chr3 33471865 33472009 -126127774 + B1_Mm SINE Alu 2 146 -1 6 840 221 0 35 0 chr3 33472009 33472038 -126127745 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 6 840 3804 139 14 44 chr3 33472038 33472450 -126127333 + L1_Mur2 LINE L1 3475 3880 -1997 6 840 6691 119 37 17 chr3 33472450 33473591 -126126192 - RMER16-int LTR ERVK -1573 3833 2670 6 840 1359 268 123 34 chr3 33473591 33474045 -126125738 + RMER16 LTR ERVK 1 533 0 6 840 664 145 8 0 chr3 33474046 33474163 -126125620 - RMER16-int LTR ERVK -2732 2674 2557 6 840 1664 195 20 84 chr3 33474245 33474649 -126125134 + RLTR1B LTR ERV1 135 512 0 6 840 3328 212 63 82 chr3 33474656 33476072 -126123711 - ETnERV2-int LTR ERVK -3654 3590 1454 6 840 302 278 18 18 chr3 33476097 33476207 -126123576 - ETnERV2-int LTR ERVK -2132 1182 1073 6 840 1339 194 42 3 chr3 33476278 33476567 -126123216 + Lx5 LINE L1 6751 7050 0 6 840 1087 112 11 6 chr3 33476975 33477154 -126122629 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 6 840 595 163 8 8 chr3 33477159 33477283 -126122500 + GA-rich Low_complexity Low_complexity 2 125 0 6 840 205 356 37 24 chr3 33477951 33478115 -126121668 + L2a LINE L2 2934 3099 -327 6 840 1059 176 53 98 chr3 33478607 33478852 -126120931 - RMER5 LTR ERV1 0 534 301 6 840 194 0 39 0 chr3 33479410 33479436 -126120347 + (TTTTTG)n Simple_repeat Simple_repeat 3 29 0 6 840 2497 107 126 0 chr3 33479593 33479966 -126119817 + RLTR9B2 LTR ERVK 1 420 0 6 840 2554 313 58 24 chr3 33480309 33481405 -126118378 - Lx8 LINE L1 -190 7283 6150 6 840 461 215 0 51 chr3 33481398 33481535 -126118248 + Lx7 LINE L1 4876 5005 -875 6 840 1095 97 0 17 chr3 33481538 33481717 -126118066 + (GGA)n Simple_repeat Simple_repeat 3 178 0 6 840 1539 17 0 0 chr3 33481721 33481899 -126117884 + (GGAGAA)n Simple_repeat Simple_repeat 3 180 0 6 840 370 0 0 39 chr3 33481906 33481958 -126117825 + (CAA)n Simple_repeat Simple_repeat 2 51 0 6 840 386 200 27 0 chr3 33481958 33482068 -126117715 + GA-rich Low_complexity Low_complexity 4 116 0 6 840 1558 237 159 7 chr3 33482081 33482794 -126116989 + Lx7 LINE L1 5051 5925 -1771 6 840 1215 204 107 55 chr3 33485211 33485538 -126114245 - ORR1B2 LTR MaLR -23 344 1 6 840 5923 1 0 0 chr3 33485592 33486277 -126113506 - L1Md_A LINE L1 -31 5852 5168 6 840 6589 6 0 0 chr3 33486277 33487008 -126112775 + L1Md_A LINE L1 5852 6582 0 6 840 467 262 59 75 chr3 33487371 33487557 -126112226 + MTEa LTR MaLR 1 183 -196 6 840 336 48 0 0 chr3 33487658 33487700 -126112083 + (T)n Simple_repeat Simple_repeat 1 42 0 6 840 1158 61 0 7 chr3 33487700 33487849 -126111934 - B1_Mus1 SINE Alu 0 148 1 6 840 412 303 96 48 chr3 33487968 33488155 -126111628 + MLT1C LTR MaLR 167 362 -105 6 840 699 271 40 65 chr3 33488167 33488519 -126111264 + RLTR15 LTR ERVK 1 343 -16 6 840 4133 169 66 2 chr3 33489483 33490290 -126109493 + Lx5 LINE L1 5784 6641 -409 6 840 473 185 42 8 chr3 33490294 33490414 -126109369 + Lx7 LINE L1 7573 7696 0 6 840 189 0 0 0 chr3 33490447 33490468 -126109315 + (CATA)n Simple_repeat Simple_repeat 2 22 0 6 840 273 236 0 79 chr3 33490732 33490819 -126108964 + PB1D7 SINE Alu 43 120 0 6 840 2551 26 13 7 chr3 33491991 33492299 -126107484 - L1Md_F2 LINE L1 0 6582 6273 6 840 377 20 20 0 chr3 33492317 33492367 -126107416 + (TTTG)n Simple_repeat Simple_repeat 2 52 0 6 840 1182 272 48 41 chr3 33492775 33493189 -126106594 - MTD LTR MaLR 0 419 3 6 840 251 407 0 34 chr3 33494429 33494546 -126105237 + PB1D7 SINE Alu 2 114 -6 6 840 749 281 101 57 chr3 33494595 33495002 -126104781 - Lx8 LINE L1 -8 7465 7041 6 840 1074 38 0 0 chr3 33495019 33495150 -126104633 + (TCTCCC)n Simple_repeat Simple_repeat 3 133 0 6 840 781 261 24 0 chr3 33495636 33495847 -126103936 - Lx8 LINE L1 -532 6941 6726 6 840 16374 29 0 1 chr3 33495862 33498584 -126101199 - L1Md_T LINE L1 0 6582 3864 6 840 7580 66 1 17 chr3 33498585 33500000 -126099783 + L1Md_Gf LINE L1 117 1611 -4275 6 840 30701 42 0 0 chr3 33500000 33503979 -126095804 + L1Md_T LINE L1 1609 5586 -297 1 840 8332 38 0 0 chr3 33503979 33504975 -126094808 + L1Md_T LINE L1 5587 6582 0 1 840 20670 35 6 1 chr3 33504979 33508274 -126091509 - L1Md_A LINE L1 -2011 3872 560 2 840 364 253 0 12 chr3 33508314 33508398 -126091385 - Lx8 LINE L1 -796 6677 6595 3 840 268 95 71 0 chr3 33508398 33508440 -126091343 + RLTR15 LTR ERVK 1 45 -314 4 840 1161 330 67 32 chr3 33508442 33509069 -126090714 + Lx8 LINE L1 6646 7294 -179 5 840 567 0 0 0 chr3 33509208 33509271 -126090512 + (GA)n Simple_repeat Simple_repeat 1 63 0 6 840 3374 210 39 98 chr3 33509285 33510303 -126089480 - RMER17B LTR ERVK 0 958 1 7 840 393 314 77 50 chr3 33510349 33510440 -126089343 - MLT2B1 LTR ERVL -8 554 463 8 840 494 43 14 0 chr3 33510440 33510509 -126089274 + (TG)n Simple_repeat Simple_repeat 2 71 0 9 840 437 321 84 35 chr3 33510509 33510754 -126089029 - MLT2B1 LTR ERVL -100 462 107 8 840 232 285 153 35 chr3 33511507 33511736 -126088047 + MER113A DNA MER1_type 55 310 -4 1 840 1068 62 0 111 chr3 33511905 33512086 -126087697 + L1_Mus2 LINE L1 6406 6566 0 1 840 857 231 82 70 chr3 33512113 33512429 -126087354 - Lx9 LINE L1 -497 7147 6828 1 840 276 255 10 19 chr3 33512431 33512535 -126087248 + Lx9 LINE L1 7392 7494 -150 1 840 267 79 0 0 chr3 33512547 33512585 -126087198 + (TA)n Simple_repeat Simple_repeat 2 39 0 1 840 393 39 0 0 chr3 33512591 33512642 -126087141 + (CA)n Simple_repeat Simple_repeat 2 52 0 1 840 393 218 13 0 chr3 33512643 33512721 -126087062 - B3 SINE B2 -68 148 70 1 840 465 50 0 0 chr3 33512726 33512786 -126086997 + (TA)n Simple_repeat Simple_repeat 1 60 0 1 840 1073 84 0 7 chr3 33512992 33513147 -126086636 + (GAAA)n Simple_repeat Simple_repeat 2 155 0 1 840 21 36 0 0 chr3 33513404 33513432 -126086351 + AT_rich Low_complexity Low_complexity 1 28 0 1 840 1452 311 70 5 chr3 33513557 33514181 -126085602 + Lx8 LINE L1 6665 7329 -144 2 840 681 288 62 6 chr3 33514396 33514574 -126085209 + B3 SINE B2 1 188 -28 2 840 189 0 0 0 chr3 33515620 33515641 -126084142 + (CA)n Simple_repeat Simple_repeat 2 22 0 2 840 544 172 27 7 chr3 33515641 33515787 -126083996 + GA-rich Low_complexity Low_complexity 1 149 0 2 840 265 325 132 70 chr3 33515805 33516044 -126083739 + MIR SINE MIR 2 251 -17 2 840 25 0 0 0 chr3 33516933 33516958 -126082825 + AT_rich Low_complexity Low_complexity 1 25 0 2 840 437 301 32 13 chr3 33517063 33517221 -126082562 - RSINE1 SINE B4 0 165 5 2 840 411 21 0 0 chr3 33517784 33517832 -126081951 + (TG)n Simple_repeat Simple_repeat 1 48 0 2 840 29037 42 1 161 chr3 33517890 33523911 -126075872 + L1Md_A LINE L1 536 5586 -297 2 840 8301 36 3 0 chr3 33523911 33524904 -126074879 + L1Md_A LINE L1 5587 6582 0 2 840 10478 56 1 0 chr3 33525026 33526398 -126073385 + L1Md_F2 LINE L1 4214 5586 -297 2 840 7903 56 4 0 chr3 33526398 33527388 -126072395 + L1Md_F2 LINE L1 5587 6580 -2 2 840 266 276 30 30 chr3 33528245 33528346 -126071437 + GA-rich Low_complexity Low_complexity 3 103 0 3 840 203 163 0 44 chr3 33528896 33528941 -126070842 + A-rich Low_complexity Low_complexity 3 45 0 3 840 1350 42 0 0 chr3 33530945 33531110 -126068673 + L1Md_T LINE L1 6418 6582 0 3 840 290 326 85 60 chr3 33531967 33532166 -126067617 + LTR33 LTR ERVL 130 333 -182 3 840 248 0 31 0 chr3 33532809 33532841 -126066942 + (TAAAA)n Simple_repeat Simple_repeat 4 36 0 3 840 848 219 0 73 chr3 33533446 33533623 -126066160 + RSINE1 SINE B4 2 165 0 3 840 222 128 0 0 chr3 33534592 33534631 -126065152 + (CA)n Simple_repeat Simple_repeat 2 40 0 3 840 24 0 0 0 chr3 33534753 33534777 -126065006 + AT_rich Low_complexity Low_complexity 1 24 0 3 840 221 119 0 23 chr3 33534953 33534996 -126064787 + (TCC)n Simple_repeat Simple_repeat 2 43 0 3 840 7058 114 25 36 chr3 33535147 33537151 -126062632 - Lx LINE L1 -6 6648 4655 3 840 1886 128 31 81 chr3 33537146 33537528 -126062255 - L1VL2 LINE L1 -5879 456 94 4 840 842 276 5 36 chr3 33538046 33538268 -126061515 + B3 SINE B2 1 215 -1 4 840 456 322 53 82 chr3 33538328 33538597 -126061186 + L1MEg LINE L1 1305 1568 -4674 4 840 337 0 62 0 chr3 33538597 33538645 -126061138 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 4 840 456 322 53 82 chr3 33538645 33538754 -126061029 + L1MEg LINE L1 1569 1671 -4571 4 840 2397 193 182 55 chr3 33538754 33539408 -126060375 - RMER19A LTR ERVK 0 737 1 4 840 456 322 53 82 chr3 33539408 33539441 -126060342 + L1MEg LINE L1 1672 1704 -4538 4 840 284 305 107 45 chr3 33539572 33539837 -126059946 + L1M2 LINE L1 2104 2385 -3462 4 840 272 179 13 0 chr3 33539886 33539964 -126059819 + (TG)n Simple_repeat Simple_repeat 2 80 0 4 840 340 292 98 28 chr3 33540031 33540246 -126059537 + L1MEg LINE L1 2504 2733 -3413 4 840 977 48 8 0 chr3 33540468 33540593 -126059190 + B1_Mm SINE Alu 19 144 -3 4 840 198 0 0 0 chr3 33540593 33540615 -126059168 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 4 840 277 337 0 21 chr3 33540955 33541049 -126058734 - B1F1 SINE Alu -51 98 7 4 840 228 167 0 0 chr3 33541334 33541382 -126058401 + A-rich Low_complexity Low_complexity 1 48 0 5 840 287 330 73 83 chr3 33541592 33541809 -126057974 + MIRb SINE MIR 23 240 -28 5 840 4347 35 0 0 chr3 33542020 33542563 -126057220 - L1Md_T LINE L1 -452 6130 5588 5 840 3861 35 0 0 chr3 33542563 33543019 -126056764 + L1Md_T LINE L1 6127 6582 0 5 840 700 208 28 0 chr3 33543088 33543232 -126056551 + B1_Mus1 SINE Alu 1 148 0 5 840 205 186 0 0 chr3 33543234 33543277 -126056506 + A-rich Low_complexity Low_complexity 1 43 0 5 840 189 0 0 0 chr3 33543890 33543911 -126055872 + (A)n Simple_repeat Simple_repeat 1 21 0 5 840 331 170 226 15 chr3 33544937 33545074 -126054709 - L1_Mur3 LINE L1 -2165 3715 3550 5 840 7365 98 8 1 chr3 33545103 33546676 -126053107 - L1_Mus3 LINE L1 0 6638 5055 5 840 420 192 90 0 chr3 33546678 33546756 -126053027 - B4 SINE B4 -207 85 1 5 840 264 362 13 80 chr3 33547744 33547771 -126052012 - B1F1 SINE Alu 0 149 124 5 840 617 188 164 0 chr3 33547771 33547899 -126051884 + B1_Mur4 SINE Alu 1 149 -1 6 840 315 323 19 25 chr3 33547899 33548021 -126051762 - PB1D7 SINE Alu -26 123 10 5 840 1139 260 145 52 chr3 33548147 33548519 -126051264 + MTD LTR MaLR 1 407 -12 6 840 285 98 0 0 chr3 33548573 33548614 -126051169 + (TGG)n Simple_repeat Simple_repeat 3 43 0 6 840 584 227 58 0 chr3 33549246 33549418 -126050365 - Lx7 LINE L1 -1787 5909 5728 6 840 293 152 17 0 chr3 33549444 33549503 -126050280 - Lx7 LINE L1 -1909 5787 5728 6 840 992 76 0 14 chr3 33549553 33549699 -126050084 - L1_Mus2 LINE L1 0 6566 6423 6 840 1091 40 6 75 chr3 33549699 33549860 -126049923 + L1_Mus2 LINE L1 6223 6372 -194 6 840 180 271 0 33 chr3 33550568 33550629 -126049154 + MIRc SINE MIR 129 187 -81 6 840 3135 65 10 0 chr3 33550632 33551034 -126048749 + L1Md_F2 LINE L1 6176 6581 -1 6 840 268 258 15 0 chr3 33551146 33551212 -126048571 + ID4_ SINE ID 3 69 -14 6 840 4467 223 79 10 chr3 33551388 33551763 -126048020 + Lx6 LINE L1 6337 6741 -719 6 840 336 48 0 0 chr3 33551763 33551805 -126047978 + (TAAA)n Simple_repeat Simple_repeat 2 43 0 6 840 4467 223 79 10 chr3 33551805 33552476 -126047307 + Lx6 LINE L1 6742 7455 -5 6 840 243 0 0 0 chr3 33552512 33552539 -126047244 + (GA)n Simple_repeat Simple_repeat 1 27 0 7 840 231 114 0 0 chr3 33553007 33553042 -126046741 + (TTTC)n Simple_repeat Simple_repeat 2 36 0 7 840 327 159 101 11 chr3 33553044 33553133 -126046650 - RMER1C Other Other -2 1340 1244 7 840 4377 36 21 2 chr3 33553152 33553680 -126046103 + L1Md_F2 LINE L1 6031 6568 -14 7 841 2782 181 69 80 chr3 33554826 33555540 -126044243 + RMER6D LTR ERVK 1 706 -14 7 841 3477 180 74 19 chr3 33556200 33556969 -126042814 + RLTR40 LTR ERVK 1 811 -6 7 841 22 35 0 0 chr3 33557078 33557107 -126042676 + AT_rich Low_complexity Low_complexity 1 29 0 7 841 423 0 0 0 chr3 33557157 33557204 -126042579 + (TAGA)n Simple_repeat Simple_repeat 4 50 0 7 841 224 345 12 12 chr3 33557261 33557346 -126042437 - L2a LINE L2 -40 3386 3302 7 841 1218 199 76 98 chr3 33559023 33559146 -126040637 - MT2B LTR ERVL 0 601 492 7 841 3146 53 8 5 chr3 33559146 33559541 -126040242 - MTA_Mm LTR MaLR 0 396 1 8 841 1218 213 76 102 chr3 33559541 33559818 -126039965 - MT2B LTR ERVL -110 491 111 7 841 265 333 40 48 chr3 33560563 33560689 -126039094 - LTR85a LTR Gypsy? -555 147 23 8 841 255 341 22 0 chr3 33561258 33561349 -126038434 + RMER15 LTR ERVL 373 465 -110 8 841 17271 15 0 0 chr3 33561815 33563895 -126035888 + L1Md_A LINE L1 3507 5586 -297 8 841 8782 17 0 0 chr3 33563895 33564891 -126034892 + L1Md_A LINE L1 5587 6582 0 8 841 524 281 106 35 chr3 33565090 33565260 -126034523 + B3A SINE B2 1 182 -16 8 841 25 31 0 0 chr3 33565291 33565323 -126034460 + AT_rich Low_complexity Low_complexity 1 32 0 8 841 5511 69 14 8 chr3 33565336 33566079 -126033704 - Lx3_Mus LINE L1 0 7009 6263 8 841 239 329 14 0 chr3 33566275 33566345 -126033438 + ID4_ SINE ID 3 73 -10 8 841 377 257 0 0 chr3 33566424 33566498 -126033285 + B3A SINE B2 1 74 -124 8 841 2560 82 93 0 chr3 33566530 33566896 -126032887 + Lx3_Mus LINE L1 6602 7001 -8 8 841 714 260 17 17 chr3 33567394 33567574 -126032209 - MTC LTR MaLR -52 369 190 9 841 6756 173 20 9 chr3 33567604 33569202 -126030581 + Lx2B LINE L1 5354 6978 -22 9 841 14899 181 28 54 chr3 33569203 33574086 -126025697 - Lx6 LINE L1 -42 7418 2627 9 841 2241 157 90 8 chr3 33574084 33574098 -126025685 - Lx6 LINE L1 -3804 2076 2058 9 841 378 42 0 0 chr3 33574098 33574146 -126025637 + (TG)n Simple_repeat Simple_repeat 2 49 0 9 841 2241 157 90 8 chr3 33574146 33574644 -126025139 - Lx6 LINE L1 -3823 2057 1523 9 841 587 208 0 8 chr3 33574638 33574759 -126025024 + Lx6 LINE L1 6246 6365 -685 9 841 854 318 71 41 chr3 33574786 33574862 -126024921 + Lx6 LINE L1 6506 6584 -466 9 841 1172 29 0 0 chr3 33574862 33574999 -126024784 + B1_Mus2 SINE Alu 1 137 -10 9 841 306 0 0 0 chr3 33574999 33575033 -126024750 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 9 841 1005 304 137 11 chr3 33575033 33575479 -126024304 + Lx6 LINE L1 6585 7460 0 9 841 198 103 0 0 chr3 33575848 33575877 -126023906 + (TA)n Simple_repeat Simple_repeat 1 29 0 9 841 2102 47 0 0 chr3 33576021 33576275 -126023508 + L1Md_T LINE L1 6329 6582 0 9 841 21208 148 39 9 chr3 33576449 33581731 -126018052 - Lx2B LINE L1 0 7000 1557 9 841 306 0 0 0 chr3 33583408 33583442 -126016341 + (TTG)n Simple_repeat Simple_repeat 2 35 0 1 841 2208 108 6 1 chr3 33583992 33584524 -126015259 - L1VL4 LINE L1 -2345 1214 679 1 841 22 56 0 0 chr3 33584759 33584795 -126014988 + AT_rich Low_complexity Low_complexity 1 36 0 1 841 24 0 0 0 chr3 33584858 33584882 -126014901 + AT_rich Low_complexity Low_complexity 1 24 0 1 841 284 214 0 67 chr3 33584886 33584946 -126014837 - RMER12B LTR ERVK -8 1396 1341 1 841 6976 155 44 45 chr3 33584989 33586446 -126013337 - RLTR21 LTR ERVK -44 1528 1 1 841 189 0 0 0 chr3 33586657 33586678 -126013105 + (TAAA)n Simple_repeat Simple_repeat 4 24 0 1 841 376 255 99 9 chr3 33587784 33587895 -126011888 - ORR1E LTR MaLR -5 354 234 1 841 2374 167 48 0 chr3 33587891 33588286 -126011497 + MTD LTR MaLR 6 419 0 1 841 1852 219 96 19 chr3 33588286 33588756 -126011027 + MTD-int LTR MaLR 1 506 -752 1 841 275 226 0 16 chr3 33588759 33588822 -126010961 + MTD-int LTR MaLR 1194 1255 -708 1 841 2190 143 63 26 chr3 33589496 33589876 -126009907 - ORR1B1 LTR MaLR 0 394 1 1 841 1254 257 58 123 chr3 33590405 33591200 -126008583 - RLTR19-int LTR ERVK -3058 3079 2337 1 841 845 169 21 10 chr3 33591193 33591385 -126008398 - RLTR19-int LTR ERVK -3395 2127 1934 1 841 362 250 9 27 chr3 33591382 33591493 -126008290 - RLTR19-int LTR ERVK -3544 1978 1870 1 841 1124 102 0 0 chr3 33592016 33592163 -126007620 + B1_Mus1 SINE Alu 2 148 0 1 841 1170 93 20 10 chr3 33592163 33592465 -126007318 + (GAAA)n Simple_repeat Simple_repeat 1 304 0 1 841 685 202 95 110 chr3 33592466 33592666 -126007117 + MTC-int LTR MaLR 626 822 -436 1 841 321 358 132 6 chr3 33592674 33592840 -126006943 - MLT1E1A LTR MaLR -194 486 300 1 841 737 310 61 20 chr3 33593206 33593453 -126006330 - ORR1E LTR MaLR 0 359 103 1 841 423 311 22 7 chr3 33593455 33593591 -126006192 - RMER30 DNA MER1_type -13 189 52 1 841 550 345 0 20 chr3 33593572 33593720 -126006063 - RSINE1 SINE B4 -18 147 3 1 841 255 329 24 0 chr3 33593727 33593809 -126005974 - RMER30 DNA MER1_type -112 90 7 1 841 273 235 186 12 chr3 33593808 33593894 -126005889 - ORR1E LTR MaLR -257 102 2 1 841 37255 32 1 6 chr3 33595501 33601683 -125998100 - L1Md_T LINE L1 0 6582 440 1 841 245 29 29 0 chr3 33601816 33601850 -125997933 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1 841 3857 221 69 4 chr3 33602317 33603159 -125996624 - Lx6 LINE L1 -4 7456 6560 1 841 2348 168 136 21 chr3 33603170 33603705 -125996078 - RMER6C LTR ERVK 0 690 94 1 841 3106 223 34 8 chr3 33603705 33604432 -125995351 - Lx6 LINE L1 -933 6527 5782 1 841 3580 170 174 7 chr3 33604440 33605556 -125994227 - Lx3C LINE L1 -2 6974 5672 1 841 12970 59 2 14 chr3 33605550 33607945 -125991838 + L1Md_F2 LINE L1 4140 6507 -75 1 841 2378 186 4 14 chr3 33607946 33608229 -125991554 - L1_Mur3 LINE L1 -4120 1760 1484 1 841 5463 124 39 8 chr3 33608229 33609097 -125990686 - Lx LINE L1 -3 6651 5757 1 841 2378 186 5 14 chr3 33609097 33609389 -125990394 - L1_Mur3 LINE L1 -4397 1483 1184 1 841 221 0 35 0 chr3 33609389 33609418 -125990365 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 1 841 650 221 83 0 chr3 33609418 33609496 -125990287 - L1_Mur3 LINE L1 -5898 1188 1089 1 841 291 28 0 0 chr3 33609500 33609536 -125990247 + (TG)n Simple_repeat Simple_repeat 2 37 0 1 841 3615 76 2 10 chr3 33609626 33610105 -125989678 + MT2C_Mm LTR ERVL 1 475 0 1 841 546 274 41 33 chr3 33610162 33610404 -125989379 - L1_Mur3 LINE L1 -7383 345 102 1 841 801 312 86 42 chr3 33610484 33610889 -125988894 - Lx8 LINE L1 -253 7220 6798 1 841 553 188 7 105 chr3 33611044 33611184 -125988599 + ORR1B1 LTR MaLR 1 126 -268 1 841 994 219 82 17 chr3 33611184 33611416 -125988367 + RLTR13D2 LTR ERVK 1 247 -559 1 841 3357 112 15 27 chr3 33611396 33611918 -125987865 + RLTR13D2 LTR ERVK 508 1023 0 1 841 1361 110 15 5 chr3 33611945 33612146 -125987637 + ORR1B1 LTR MaLR 192 394 0 1 841 240 374 48 8 chr3 33612438 33612562 -125987221 - Tigger12c DNA MER2_type -555 179 51 1 841 1816 248 58 51 chr3 33612755 33613381 -125986402 + L1_Mur3 LINE L1 3241 3881 -1999 1 841 342 0 0 0 chr3 33613381 33613419 -125986364 + (TTTAA)n Simple_repeat Simple_repeat 1 38 0 1 841 1816 248 58 51 chr3 33613419 33613447 -125986336 + L1_Mur3 LINE L1 3882 3905 -1975 1 841 1438 69 0 11 chr3 33613447 33613637 -125986146 + B2_Mm2 SINE B2 1 188 -7 1 841 1816 248 58 51 chr3 33613637 33613708 -125986075 + L1_Mur3 LINE L1 3906 3972 -1908 1 841 317 261 11 21 chr3 33613684 33613778 -125986005 + Lx7 LINE L1 5684 5776 -1920 1 841 7549 85 23 4 chr3 33613775 33615717 -125984066 + L1VL2 LINE L1 91 2075 -1540 1 841 282 235 68 61 chr3 33615787 33615950 -125983833 + L1MA4 LINE L1 5157 5320 -823 1 841 647 177 8 17 chr3 33616008 33616145 -125983638 + B1_Mur3 SINE Alu 5 139 -11 1 841 1437 271 52 23 chr3 33616173 33616691 -125983092 + L1MA4 LINE L1 5386 5918 -382 1 841 301 374 21 14 chr3 33617613 33617754 -125982029 + MIRm SINE MIR 36 177 -99 1 841 431 295 138 50 chr3 33618597 33618848 -125980935 - L1ME1 LINE L1 -130 6049 5772 1 841 183 129 0 0 chr3 33618848 33618879 -125980904 + (CATA)n Simple_repeat Simple_repeat 2 32 0 1 841 452 284 80 21 chr3 33618879 33619142 -125980641 - L1ME1 LINE L1 -408 5771 5489 1 841 9467 77 2 1 chr3 33619367 33620702 -125979081 + L1_Mm LINE L1 2104 3440 -2443 1 841 2244 206 71 34 chr3 33620901 33620926 -125978857 - Lx7 LINE L1 -850 6846 6822 1 841 1958 206 44 12 chr3 33620926 33621334 -125978449 - MTC LTR MaLR 0 421 1 1 841 2244 206 71 34 chr3 33621334 33621844 -125977939 - Lx7 LINE L1 -875 6821 6291 1 841 2868 206 40 30 chr3 33621847 33622542 -125977241 + Lx7 LINE L1 6814 7515 -181 1 841 189 94 0 0 chr3 33622556 33622588 -125977195 + (TTTTG)n Simple_repeat Simple_repeat 1 32 0 1 841 613 165 221 8 chr3 33622600 33622722 -125977061 - PB1D9 SINE Alu 0 148 1 1 841 324 314 9 47 chr3 33622637 33622744 -125977039 - B4 SINE B4 -124 168 66 1 841 368 246 48 48 chr3 33622746 33622870 -125976913 + Lx7 LINE L1 7589 7696 0 1 841 1113 176 73 10 chr3 33623084 33623290 -125976493 - URR1B DNA MER1_type 0 225 7 1 841 297 295 92 23 chr3 33623441 33623604 -125976179 - MLT1A1 LTR MaLR -17 391 170 1 841 3243 49 22 0 chr3 33623729 33624139 -125975644 - L1Md_F2 LINE L1 -2 6580 6162 1 841 1874 229 21 40 chr3 33624187 33624705 -125975078 + Lx7 LINE L1 6818 7325 -371 1 841 237 220 0 0 chr3 33624718 33624777 -125975006 + T-rich Low_complexity Low_complexity 2 60 0 1 841 513 0 0 0 chr3 33624791 33624848 -125974935 + (TAGA)n Simple_repeat Simple_repeat 2 58 0 1 841 2074 224 68 42 chr3 33625848 33626288 -125973495 + RLTR20A LTR ERVK 1 439 -102 1 841 393 22 0 0 chr3 33626288 33626334 -125973449 + (TG)n Simple_repeat Simple_repeat 2 47 0 1 841 2074 224 68 42 chr3 33626334 33626420 -125973363 + RLTR20A LTR ERVK 440 540 -1 1 841 256 354 0 0 chr3 33627274 33627356 -125972427 + (TA)n Simple_repeat Simple_repeat 2 83 0 1 841 3224 291 62 24 chr3 33627356 33628631 -125971152 + Lx9 LINE L1 6301 7624 -20 1 841 1622 211 72 30 chr3 33628899 33629299 -125970484 - MTD LTR MaLR 0 419 3 1 841 6385 188 40 17 chr3 33630307 33630725 -125969058 + Lx5 LINE L1 5704 6110 -940 1 841 2637 96 71 0 chr3 33630725 33631119 -125968664 - BGLII_Mus LTR ERVK 0 422 1 1 841 6385 188 40 17 chr3 33631119 33632017 -125967766 + Lx5 LINE L1 6111 7049 -1 1 841 427 323 119 37 chr3 33632940 33633183 -125966600 - LTR83 LTR ERVL 0 780 518 1 841 232 304 0 0 chr3 33633183 33633239 -125966544 + RSINE1 SINE B4 2 57 -108 1 841 1839 206 30 64 chr3 33633240 33633676 -125966107 - MTC LTR MaLR 0 421 1 1 841 3575 206 28 16 chr3 33634602 33635427 -125964356 + Lx9 LINE L1 6808 7642 -2 1 841 196 298 58 35 chr3 33636111 33636198 -125963585 + MER5A DNA MER1_type 2 90 -99 1 841 509 218 6 18 chr3 33636288 33636456 -125963327 + GA-rich Low_complexity Low_complexity 3 168 0 1 841 210 327 66 26 chr3 33636975 33637096 -125962687 - MIR SINE MIR -43 165 36 1 841 1173 62 0 0 chr3 33637346 33637492 -125962291 + B1_Mm SINE Alu 1 146 -1 1 841 804 21 0 0 chr3 33637492 33637586 -125962197 + (GGAA)n Simple_repeat Simple_repeat 3 96 0 1 841 289 369 0 0 chr3 33637638 33637722 -125962061 + RSINE1 SINE B4 72 155 -10 1 841 183 400 0 0 chr3 33637873 33637948 -125961835 + MIR SINE MIR 58 132 -130 1 841 248 246 0 17 chr3 33638192 33638250 -125961533 - MIRm SINE MIR -103 173 117 1 841 835 260 20 0 chr3 33638287 33638483 -125961300 + B3 SINE B2 17 216 0 1 841 224 276 69 0 chr3 33638500 33638558 -125961225 - MIR SINE MIR -169 93 32 1 841 363 358 180 3 chr3 33638775 33639114 -125960669 + L2a LINE L2 3028 3426 0 1 841 457 16 16 16 chr3 33640284 33640347 -125959436 + (TA)n Simple_repeat Simple_repeat 2 64 0 1 841 180 333 39 26 chr3 33640541 33640618 -125959165 + L2b LINE L2 3068 3145 -230 1 841 232 250 15 0 chr3 33640758 33640826 -125958957 - L1MA5 LINE L1 -12 6288 6220 1 841 209 329 27 14 chr3 33641447 33641521 -125958262 + MIRb SINE MIR 20 94 -174 1 841 690 251 54 134 chr3 33641624 33641863 -125957920 + MTE2b LTR MaLR 1 220 -159 1 841 361 329 28 28 chr3 33642669 33642813 -125956970 + Charlie20a DNA Charlie 69 212 -595 1 841 270 73 0 0 chr3 33642851 33642892 -125956891 + (TAGA)n Simple_repeat Simple_repeat 1 41 0 1 841 1029 75 19 6 chr3 33643245 33643406 -125956377 + L1_Mus3 LINE L1 6473 6635 -3 1 841 901 260 124 32 chr3 33643452 33643798 -125955985 - MTEa LTR MaLR 0 379 2 1 841 1360 274 87 68 chr3 33643812 33644523 -125955260 - RMER15-int LTR ERVL -6 4993 4269 1 841 2900 309 57 17 chr3 33644916 33646173 -125953610 - RMER15-int LTR ERVL -3202 1797 490 1 841 4234 107 7 5 chr3 33646492 33647092 -125952691 + MT2B LTR ERVL 1 601 0 1 841 195 297 52 52 chr3 33647594 33647690 -125952093 + L2b LINE L2 3280 3375 0 1 841 1082 86 0 7 chr3 33647747 33647887 -125951896 + B1_Mus2 SINE Alu 1 139 -8 1 841 292 214 42 14 chr3 33648320 33648391 -125951392 - ID4 SINE ID -8 75 3 1 841 276 300 33 11 chr3 33648422 33648513 -125951270 - PB1D10 SINE Alu -24 93 1 1 841 4132 191 77 37 chr3 33649188 33650288 -125949495 + Lx9 LINE L1 6470 7643 -1 1 841 342 0 0 0 chr3 33650604 33650642 -125949141 + (CA)n Simple_repeat Simple_repeat 1 38 0 1 841 2355 102 239 26 chr3 33652068 33652520 -125947263 - RLTR6_Mm LTR ERV1 -70 584 37 1 841 1186 244 107 13 chr3 33652628 33653077 -125946706 + L1MB3 LINE L1 5689 6179 -4 1 841 580 279 67 57 chr3 33653267 33653461 -125946322 + B3A SINE B2 3 198 0 1 841 614 263 0 15 chr3 33653499 33653634 -125946149 + RSINE1 SINE B4 8 140 -25 1 841 324 0 0 0 chr3 33653635 33653671 -125946112 + (CA)n Simple_repeat Simple_repeat 1 36 0 1 841 195 129 0 0 chr3 33653674 33653705 -125946078 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 1 841 783 277 62 32 chr3 33655169 33655605 -125944178 + L1MA4A LINE L1 4377 4825 -1318 1 841 5765 189 46 124 chr3 33655997 33656495 -125943288 + L1_Mur3 LINE L1 863 1298 -6430 1 841 1396 86 16 0 chr3 33656495 33656681 -125943102 + B2_Mm2 SINE B2 1 189 -6 2 841 5765 183 91 80 chr3 33656681 33658392 -125941391 + L1_Mur3 LINE L1 1299 3030 -2850 1 841 789 205 26 109 chr3 33658392 33658622 -125941161 - LTRIS3 LTR ERV1 0 512 302 2 841 404 104 60 0 chr3 33658661 33658728 -125941055 - LTRIS5 LTR ERV1 -376 71 1 2 841 1041 133 33 0 chr3 33658728 33658939 -125940844 + L1_Mur3 LINE L1 3027 3244 -2636 1 841 520 132 36 0 chr3 33658954 33659037 -125940746 + ORR1B2 LTR MaLR 247 332 -35 2 841 7798 169 34 8 chr3 33659036 33660489 -125939294 + ORR1B2-int LTR MaLR 19 1509 0 2 841 2214 163 6 0 chr3 33660490 33660846 -125938937 + ORR1B2 LTR MaLR 2 359 -8 2 841 2926 133 19 4 chr3 33660850 33661370 -125938413 + L1_Mur3 LINE L1 3757 4284 -1596 1 841 1385 146 43 4 chr3 33661419 33661653 -125938130 - RLTR15 LTR ERVK 0 359 117 2 841 2125 134 60 26 chr3 33661796 33662293 -125937490 + L1_Mur2 LINE L1 442 955 -5757 2 841 864 227 124 8 chr3 33662290 33662556 -125937227 + Lx6 LINE L1 7136 7432 -28 2 841 455 283 22 0 chr3 33662588 33662726 -125937057 + L1MA4A LINE L1 4849 4989 -1154 1 841 535 316 103 55 chr3 33662726 33662997 -125936786 - Lx8 LINE L1 -769 6704 6421 2 841 611 284 29 38 chr3 33663004 33663242 -125936541 + L1MA4A LINE L1 5677 5912 -391 1 841 1536 201 95 26 chr3 33663412 33663760 -125936023 - ORR1D1 LTR MaLR -2 372 1 2 841 1413 84 0 0 chr3 33664957 33665148 -125934635 - MTB LTR MaLR -1 399 209 2 841 4462 142 113 21 chr3 33665147 33666011 -125933772 + MTB-int LTR MaLR 315 1258 0 2 841 2810 94 18 2 chr3 33666011 33666405 -125933378 + MTB LTR MaLR 1 400 0 2 841 389 248 95 0 chr3 33666888 33666993 -125932790 - MTB LTR MaLR -244 115 1 2 841 33822 34 1 0 chr3 33667049 33672899 -125926884 + L1Md_T LINE L1 1 5589 -297 2 841 9040 5 0 0 chr3 33672899 33673895 -125925888 + L1Md_T LINE L1 5590 6585 0 2 841 326 334 125 70 chr3 33673965 33674543 -125925240 - L1MEc LINE L1 -5511 889 276 2 841 1200 218 169 82 chr3 33674543 33674962 -125924821 + MT2A LTR ERVL 4 461 -72 2 841 582 103 0 0 chr3 33674962 33675049 -125924734 + (TAGA)n Simple_repeat Simple_repeat 1 87 0 2 841 1200 218 169 82 chr3 33675049 33675114 -125924669 + MT2A LTR ERVL 462 530 -3 2 841 326 334 125 70 chr3 33675114 33675165 -125924618 - L1MEc LINE L1 -6125 275 225 2 841 1875 192 22 16 chr3 33675312 33675682 -125924101 - ORR1D1 LTR MaLR 0 374 3 2 841 4901 44 3 5 chr3 33675682 33676268 -125923515 + LTRIS_Mus LTR ERV1 1 587 0 2 841 3567 192 34 11 chr3 33676276 33676966 -125922817 - ORR1D1-int LTR MaLR 0 1370 679 2 841 3790 57 33 10 chr3 33676971 33677487 -125922296 - Lx3_Mus LINE L1 0 7009 6482 2 841 2138 41 28 0 chr3 33677487 33677778 -125922005 + Lx3_Mus LINE L1 6146 6444 -565 2 841 2566 208 61 17 chr3 33677779 33678371 -125921412 - ORR1D1-int LTR MaLR -643 727 110 2 841 700 186 34 7 chr3 33678638 33678784 -125920999 - ORR1D1-int LTR MaLR -1220 150 1 2 841 1288 232 18 92 chr3 33678797 33679190 -125920593 - ORR1D1 LTR MaLR -14 364 1 2 841 752 259 67 70 chr3 33679534 33679810 -125919973 - ORR1E LTR MaLR -4 355 70 2 841 28392 16 0 3 chr3 33680179 33683644 -125916139 + L1Md_T LINE L1 2132 5586 -297 2 841 8362 36 0 0 chr3 33683644 33684638 -125915145 + L1Md_T LINE L1 5587 6580 -2 2 105 874 297 73 28 chr3 33685148 33685505 -125914278 + MLT2D LTR ERVL 35 407 -7 2 842 218 319 183 33 chr3 33686064 33686184 -125913599 - L2a LINE L2 -4 3422 3285 2 842 180 0 0 0 chr3 33686407 33686427 -125913356 + (CAGA)n Simple_repeat Simple_repeat 2 21 0 2 842 330 26 0 0 chr3 33686961 33687000 -125912783 + (TG)n Simple_repeat Simple_repeat 1 39 0 2 842 3204 36 8 8 chr3 33687719 33688115 -125911668 - MTA_Mm LTR MaLR 0 396 1 2 842 776 321 113 23 chr3 33688387 33688926 -125910857 + L2a LINE L2 2788 3422 -4 2 842 496 291 164 88 chr3 33690478 33690795 -125908988 - MLT2B1 LTR ERVL -19 501 161 2 842 624 278 19 23 chr3 33690795 33691053 -125908730 - L1MC1 LINE L1 -270 6063 5807 2 842 450 53 0 0 chr3 33691261 33691318 -125908465 + (CA)n Simple_repeat Simple_repeat 1 57 0 2 842 1031 254 89 14 chr3 33691606 33692022 -125907761 - L1MC1 LINE L1 -524 5809 5363 2 842 397 211 49 66 chr3 33692173 33692295 -125907488 - PB1D7 SINE Alu 0 120 1 2 842 216 0 0 0 chr3 33692426 33692450 -125907333 + (TG)n Simple_repeat Simple_repeat 2 25 0 2 842 3116 136 39 23 chr3 33692526 33693085 -125906698 + RLTR12A LTR ERVK 1 568 0 2 842 1151 88 0 0 chr3 33693311 33693459 -125906324 + B1_Mus1 SINE Alu 1 148 0 2 842 504 0 0 0 chr3 33693514 33693570 -125906213 + (TG)n Simple_repeat Simple_repeat 1 56 0 2 842 298 211 10 10 chr3 33693570 33693657 -125906126 + L1MC1 LINE L1 5879 5966 -367 2 842 1381 67 17 0 chr3 33693666 33693844 -125905939 + B2_Mm2 SINE B2 1 181 -14 2 842 543 43 0 0 chr3 33693987 33694057 -125905726 + (TA)n Simple_repeat Simple_repeat 2 71 0 2 842 430 265 102 0 chr3 33694077 33694243 -125905540 + L1MC1 LINE L1 6132 6314 -19 2 842 752 244 67 14 chr3 33694873 33695081 -125904702 + ID_B1 SINE B4 6 224 0 2 842 270 323 54 0 chr3 33695329 33695422 -125904361 + LTR86A2 LTR ERVL 347 444 -64 2 842 8524 55 0 3 chr3 33695677 33696799 -125902984 - L1Md_F2 LINE L1 -134 5749 4631 2 842 6605 43 2 6 chr3 33696799 33697614 -125902169 + L1Md_F2 LINE L1 5759 6570 -12 2 842 199 71 48 0 chr3 33697784 33697826 -125901957 + (TTTG)n Simple_repeat Simple_repeat 1 44 0 2 842 1201 48 0 0 chr3 33697827 33697972 -125901811 - B1_Mus2 SINE Alu -2 145 1 2 842 239 163 0 75 chr3 33698177 33698230 -125901553 + ID4 SINE ID 6 54 -29 2 842 409 17 17 17 chr3 33698359 33698418 -125901365 + (CAAA)n Simple_repeat Simple_repeat 2 60 0 2 842 22 0 0 0 chr3 33699373 33699395 -125900388 + GC_rich Low_complexity Low_complexity 1 22 0 2 842 334 261 63 35 chr3 33699532 33699675 -125900108 + RSINE1 SINE B4 18 164 -1 2 842 396 59 0 0 chr3 33699809 33699860 -125899923 + (TA)n Simple_repeat Simple_repeat 1 51 0 2 842 438 271 0 17 chr3 33700462 33700582 -125899201 + PB1D9 SINE Alu 1 118 -2 2 842 264 147 0 85 chr3 33700957 33701039 -125898744 + T-rich Low_complexity Low_complexity 4 78 0 2 842 739 91 18 0 chr3 33701041 33701151 -125898632 - PB1D9 SINE Alu 0 120 9 2 842 329 217 174 0 chr3 33701264 33701379 -125898404 + L1MA5 LINE L1 5808 5942 -358 2 842 261 119 0 0 chr3 33702323 33702365 -125897418 + (T)n Simple_repeat Simple_repeat 1 42 0 2 842 348 187 0 167 chr3 33704635 33704731 -125895052 - ID4 SINE ID -2 81 2 2 842 520 279 16 8 chr3 33705156 33705279 -125894504 - B1F2 SINE Alu -21 128 5 2 842 365 274 40 125 chr3 33707083 33707283 -125892500 + MER20 DNA MER1_type 24 206 -13 2 842 183 224 103 0 chr3 33708826 33708884 -125890899 + L4 LINE RTE 1956 2019 -10 2 842 432 283 86 7 chr3 33709301 33709440 -125890343 + RSINE1 SINE B4 4 153 -12 2 842 528 298 65 0 chr3 33709910 33710034 -125889749 - RSINE1 SINE B4 -31 134 3 2 842 24 53 0 0 chr3 33712520 33712558 -125887225 + AT_rich Low_complexity Low_complexity 1 38 0 2 842 256 254 111 0 chr3 33715464 33715527 -125884256 + MLT1C LTR MaLR 34 103 -364 2 842 22 0 0 0 chr3 33715550 33715572 -125884211 + AT_rich Low_complexity Low_complexity 1 22 0 2 842 24 53 0 0 chr3 33715671 33715709 -125884074 + AT_rich Low_complexity Low_complexity 1 38 0 2 842 1159 71 0 45 chr3 33715906 33716083 -125883700 + L1_Mus2 LINE L1 6397 6565 -1 2 842 421 300 68 37 chr3 33716179 33716347 -125883436 - LTR40a LTR ERVL -9 510 297 2 842 451 234 28 9 chr3 33716926 33717034 -125882749 + PB1D10 SINE Alu 1 110 -7 2 842 416 275 261 37 chr3 33717235 33717665 -125882118 + L1ME4a LINE L1 3492 4017 -2129 2 842 276 235 159 14 chr3 33717666 33717735 -125882048 + ID SINE ID 3 81 -143 2 842 867 249 142 12 chr3 33718255 33718495 -125881288 + B4 SINE B4 22 292 0 2 842 392 301 162 61 chr3 33719555 33720129 -125879654 + L1ME4a LINE L1 5267 5898 -226 2 842 2803 84 5 3 chr3 33720705 33721087 -125878696 + RLTR13D5 LTR ERVK 1 383 -640 2 842 3460 52 0 2 chr3 33721093 33721554 -125878229 - ORR1A1-int LTR MaLR -1167 625 166 2 842 4418 66 43 7 chr3 33721561 33722169 -125877614 + RLTR13D5 LTR ERVK 394 1023 0 2 842 249 310 75 52 chr3 33722195 33722412 -125877371 + MIRb SINE MIR 25 244 -24 2 842 435 272 32 58 chr3 33722821 33722977 -125876806 + RSINE1 SINE B4 12 163 -2 2 842 191 195 98 0 chr3 33723441 33723482 -125876301 - MIRb SINE MIR -202 66 22 2 842 33 56 0 0 chr3 33724791 33724845 -125874938 + AT_rich Low_complexity Low_complexity 1 54 0 2 842 268 325 89 40 chr3 33726096 33726298 -125873485 - MER63D DNA AcHobo -839 222 11 2 842 806 242 47 97 chr3 33726770 33726906 -125872877 - RLTR15 LTR ERVK -15 344 214 2 842 1232 28 0 0 chr3 33726906 33727050 -125872733 + B1_Mus1 SINE Alu 5 148 0 2 842 806 242 47 97 chr3 33727050 33727275 -125872508 - RLTR15 LTR ERVK -146 213 1 2 842 234 250 123 15 chr3 33727364 33727494 -125872289 - L1MCa LINE L1 -4685 1823 1680 2 842 423 306 61 104 chr3 33727530 33727668 -125872115 - Lx8 LINE L1 0 7473 7355 2 842 183 129 0 0 chr3 33727668 33727699 -125872084 + (CTTG)n Simple_repeat Simple_repeat 2 32 0 2 842 842 173 30 0 chr3 33727699 33727832 -125871951 - B1_Mur2 SINE Alu -11 138 2 2 842 423 306 61 104 chr3 33727832 33728104 -125871679 - Lx8 LINE L1 -119 7354 7081 2 842 226 326 0 0 chr3 33729293 33729385 -125870398 + (GGGTG)n Simple_repeat Simple_repeat 2 93 0 2 842 1297 165 36 9 chr3 33729977 33730197 -125869586 - URR1A DNA MER1_type 0 226 1 2 842 323 309 8 38 chr3 33730441 33730572 -125869211 - L1M2 LINE L1 -653 5647 5521 2 842 556 312 84 13 chr3 33730576 33730875 -125868908 + L1M2 LINE L1 4616 4935 -1208 2 842 29 0 0 0 chr3 33730899 33730928 -125868855 + AT_rich Low_complexity Low_complexity 1 29 0 2 842 434 228 187 0 chr3 33731794 33731917 -125867866 - B1_Mur1 SINE Alu -3 146 1 2 842 273 262 115 0 chr3 33732179 33732304 -125867479 + B1F SINE Alu 2 149 0 2 842 4244 190 51 97 chr3 33732491 33733581 -125866202 + Lx9 LINE L1 6603 7642 -2 2 842 1117 64 14 0 chr3 33734779 33734920 -125864863 - B1_Mm SINE Alu 0 147 5 2 842 396 0 0 0 chr3 33735221 33735265 -125864518 + (TAAA)n Simple_repeat Simple_repeat 4 47 0 2 842 381 102 0 0 chr3 33735389 33735448 -125864335 + (GTTTG)n Simple_repeat Simple_repeat 5 63 0 2 842 626 155 52 0 chr3 33735448 33735564 -125864219 - B1_Mur2 SINE Alu -27 122 1 2 842 22 0 0 0 chr3 33736062 33736084 -125863699 + AT_rich Low_complexity Low_complexity 1 22 0 2 842 395 226 287 11 chr3 33737538 33737726 -125862057 + MTD LTR MaLR 179 418 -3 2 842 516 235 8 42 chr3 33739224 33739344 -125860439 - B3A SINE B2 -81 117 2 2 842 411 279 53 18 chr3 33739446 33739559 -125860224 + PB1D10 SINE Alu 1 117 0 2 842 473 325 114 13 chr3 33740170 33740398 -125859385 - MLT1A LTR MaLR -5 369 119 2 842 1337 180 146 3 chr3 33740398 33740721 -125859062 + ORR1D1 LTR MaLR 1 369 -5 2 842 266 263 182 13 chr3 33740731 33740808 -125858975 - MLT1A LTR MaLR -280 94 5 2 842 1462 206 78 52 chr3 33741003 33741387 -125858396 - MTD LTR MaLR -12 407 14 2 842 252 214 54 0 chr3 33741387 33741443 -125858340 + GA-rich Low_complexity Low_complexity 2 60 0 3 842 638 277 47 37 chr3 33741462 33741676 -125858107 + B4 SINE B4 73 288 -4 3 842 756 33 0 0 chr3 33742035 33742126 -125857657 + (CAGAG)n Simple_repeat Simple_repeat 2 92 0 3 842 202 132 26 0 chr3 33742324 33742362 -125857421 + (CAAA)n Simple_repeat Simple_repeat 1 39 0 3 842 575 273 11 22 chr3 33743532 33743712 -125856071 - RMER5 LTR ERV1 -48 486 309 3 842 231 202 88 77 chr3 33744145 33744236 -125855547 - RLTR19C LTR ERVK -381 125 34 3 842 694 212 173 46 chr3 33744271 33744508 -125855275 - RMER5 LTR ERV1 -225 309 43 3 842 337 200 67 2 chr3 33746432 33746519 -125853264 - PB1D7 SINE Alu -57 92 2 3 842 246 214 0 54 chr3 33747322 33747396 -125852387 - MTEb LTR MaLR -6 373 304 3 842 371 191 207 9 chr3 33748771 33748887 -125850896 - B1_Mur3 SINE Alu -6 143 5 3 842 550 255 50 25 chr3 33748898 33749059 -125850724 - RSINE1 SINE B4 0 165 1 3 842 1696 165 36 121 chr3 33749066 33749195 -125850588 + ORR1C2 LTR MaLR 1 134 -250 3 842 333 0 0 0 chr3 33749195 33749232 -125850551 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 3 842 1167 22 0 0 chr3 33749232 33749366 -125850417 - B1_Mus2 SINE Alu -9 138 5 3 842 1696 165 36 121 chr3 33749366 33749655 -125850128 + ORR1C2 LTR MaLR 135 383 -1 3 842 268 299 0 0 chr3 33750325 33750402 -125849381 - BC1_Mm scRNA scRNA -67 85 9 3 842 241 268 14 0 chr3 33750575 33750646 -125849137 + (TATG)n Simple_repeat Simple_repeat 3 74 0 3 842 5513 151 51 28 chr3 33750650 33751728 -125848055 - RLTR25A LTR ERVK 0 1103 1 3 842 418 253 9 5 chr3 33751734 33751966 -125847817 + (TATG)n Simple_repeat Simple_repeat 1 232 0 3 842 279 0 0 0 chr3 33753271 33753302 -125846481 + (T)n Simple_repeat Simple_repeat 1 31 0 3 842 243 179 0 0 chr3 33753442 33753509 -125846274 + CT-rich Low_complexity Low_complexity 1 67 0 3 842 223 146 98 0 chr3 33753510 33753551 -125846232 - B1_Mur2 SINE Alu -12 137 93 3 842 2543 144 29 7 chr3 33753632 33754044 -125845739 - MTC LTR MaLR 0 421 1 3 842 216 0 0 0 chr3 33754289 33754313 -125845470 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 3 842 184 250 63 99 chr3 33754514 33754625 -125845158 - L2a LINE L2 0 3426 3320 3 842 2431 53 10 10 chr3 33755193 33755500 -125844283 + L1Md_F2 LINE L1 6273 6579 -3 3 842 201 237 0 0 chr3 33756390 33756449 -125843334 + GA-rich Low_complexity Low_complexity 2 60 0 3 842 477 122 0 0 chr3 33756872 33756946 -125842837 + (TAAA)n Simple_repeat Simple_repeat 1 74 0 3 842 561 30 0 0 chr3 33757653 33757720 -125842063 + (TC)n Simple_repeat Simple_repeat 2 68 0 3 842 480 214 135 92 chr3 33757857 33758042 -125841741 - ORR1D2 LTR MaLR -4 366 174 3 842 455 230 61 160 chr3 33758212 33758424 -125841359 + B3 SINE B2 3 216 0 3 842 646 211 92 0 chr3 33759080 33759232 -125840551 - B3 SINE B2 -8 208 43 3 842 366 23 0 0 chr3 33760630 33760673 -125839110 + (TAAA)n Simple_repeat Simple_repeat 3 45 0 3 842 1343 101 37 0 chr3 33760821 33761009 -125838774 - B2_Mm2 SINE B2 0 195 1 3 842 2156 70 3 52 chr3 33762424 33762754 -125837029 + ORR1A2 LTR MaLR 6 319 -8 3 842 1878 290 106 32 chr3 33762800 33763667 -125836116 + Lx9 LINE L1 6120 7050 -594 3 842 233 174 0 80 chr3 33763683 33763733 -125836050 + Lx9 LINE L1 7123 7168 -476 3 842 506 16 0 16 chr3 33763749 33763813 -125835970 + (GGAA)n Simple_repeat Simple_repeat 3 65 0 3 842 267 134 0 56 chr3 33763837 33763908 -125835875 + G-rich Low_complexity Low_complexity 2 68 0 3 842 1131 77 0 0 chr3 33763911 33764066 -125835717 + (GGGA)n Simple_repeat Simple_repeat 2 156 0 3 842 437 118 0 0 chr3 33764299 33764362 -125835421 - Lx2 LINE L1 -436 6572 6510 3 842 2556 138 20 9 chr3 33764325 33764765 -125835018 + Lx2 LINE L1 6533 6977 -20 3 842 738 106 57 8 chr3 33764767 33764891 -125834892 + L1_Mus1 LINE L1 6438 6567 0 3 842 215 236 0 0 chr3 33764895 33764950 -125834833 + A-rich Low_complexity Low_complexity 1 55 0 3 842 885 135 12 6 chr3 33765130 33765294 -125834489 + GA-rich Low_complexity Low_complexity 2 166 0 3 842 866 251 106 62 chr3 33765357 33765697 -125834086 + ORR1E LTR MaLR 5 359 0 3 842 443 292 88 47 chr3 33766598 33766867 -125832916 - RMER20B LTR ERVK -181 461 187 3 842 450 218 234 0 chr3 33767526 33767650 -125832133 + B3A SINE B2 2 154 -44 3 842 437 115 0 13 chr3 33767650 33767729 -125832054 + (CA)n Simple_repeat Simple_repeat 1 78 0 3 842 1084 72 7 0 chr3 33767913 33768051 -125831732 - B1_Mus2 SINE Alu -8 139 1 3 842 182 352 80 33 chr3 33768284 33768434 -125831349 + MIRb SINE MIR 45 201 -67 3 842 207 220 0 0 chr3 33768798 33768848 -125830935 + (TATATG)n Simple_repeat Simple_repeat 4 53 0 3 842 1125 109 0 0 chr3 33768962 33769109 -125830674 + B1_Mus2 SINE Alu 1 147 0 3 842 347 266 124 50 chr3 33769155 33769357 -125830426 + L1M5 LINE L1 5572 5788 -336 3 842 424 259 15 55 chr3 33769600 33769800 -125829983 - RMER15 LTR ERVL -110 465 274 3 842 27 0 0 0 chr3 33770338 33770365 -125829418 + AT_rich Low_complexity Low_complexity 1 27 0 3 842 252 0 0 0 chr3 33770422 33770450 -125829333 + (TG)n Simple_repeat Simple_repeat 1 28 0 3 842 213 351 13 0 chr3 33771323 33771400 -125828383 + ID4 SINE ID 2 79 -4 3 842 28 0 0 0 chr3 33773167 33773195 -125826588 + GC_rich Low_complexity Low_complexity 1 28 0 3 842 23 0 0 0 chr3 33773391 33773414 -125826369 + AT_rich Low_complexity Low_complexity 1 23 0 3 842 230 358 86 20 chr3 33775672 33775869 -125823914 - MER99 DNA hAT? -11 820 611 3 842 1058 266 36 40 chr3 33776878 33777156 -125822627 + B4A SINE B4 7 283 -9 3 842 306 0 0 0 chr3 33778006 33778040 -125821743 + (CA)n Simple_repeat Simple_repeat 2 35 0 3 842 3099 71 5 2 chr3 33778256 33778651 -125821132 + MTA_Mm LTR MaLR 1 396 0 3 842 28 29 0 0 chr3 33778716 33778751 -125821032 + AT_rich Low_complexity Low_complexity 1 35 0 3 842 573 261 124 31 chr3 33779640 33779930 -125819853 + ORR1E LTR MaLR 24 373 -6 3 842 192 77 0 0 chr3 33780024 33780050 -125819733 + (A)n Simple_repeat Simple_repeat 1 26 0 3 842 243 263 40 0 chr3 33780416 33780492 -125819291 + ID4_ SINE ID 3 81 -2 3 842 23 0 0 0 chr3 33781608 33781631 -125818152 + AT_rich Low_complexity Low_complexity 1 23 0 3 842 224 259 151 29 chr3 33783161 33783300 -125816483 + MIRb SINE MIR 14 169 -99 3 842 1174 76 0 0 chr3 33784006 33784151 -125815632 - B1_Mm SINE Alu -2 145 1 3 842 396 0 0 0 chr3 33784348 33784392 -125815391 + (TG)n Simple_repeat Simple_repeat 1 44 0 3 842 378 0 0 0 chr3 33784392 33784433 -125815350 + (GA)n Simple_repeat Simple_repeat 1 42 0 3 842 600 53 0 0 chr3 33786725 33786801 -125812982 + (TC)n Simple_repeat Simple_repeat 1 76 0 3 842 185 243 0 14 chr3 33787105 33787115 -125812668 + (CA)n Simple_repeat Simple_repeat 1 10 0 3 842 180 152 0 0 chr3 33787115 33787148 -125812635 + (CATG)n Simple_repeat Simple_repeat 2 34 0 3 842 185 243 0 14 chr3 33787148 33787208 -125812575 + (CA)n Simple_repeat Simple_repeat 1 60 0 3 842 2003 158 60 51 chr3 33787498 33787911 -125811872 + MTD LTR MaLR 1 417 -2 3 842 1432 85 11 0 chr3 33789985 33790174 -125809609 - B2_Mm1t SINE B2 -1 192 2 3 842 471 18 0 0 chr3 33791525 33791581 -125808202 + (GA)n Simple_repeat Simple_repeat 1 56 0 3 842 285 308 48 40 chr3 33791985 33792110 -125807673 + B3 SINE B2 40 165 -51 3 842 323 333 134 5 chr3 33793299 33793516 -125806267 + MLT1J LTR MaLR 57 301 -211 3 842 1855 215 34 19 chr3 33794005 33794418 -125805365 - MTD LTR MaLR 0 419 1 3 842 1048 207 27 22 chr3 33795127 33795349 -125804434 - ID_B1 SINE B4 0 224 2 3 842 201 147 0 0 chr3 33795651 33795685 -125804098 + (CAA)n Simple_repeat Simple_repeat 3 36 0 3 842 316 286 0 62 chr3 33795869 33795966 -125803817 + B1F2 SINE Alu 41 131 -18 3 842 336 111 0 0 chr3 33796625 33796679 -125803104 + (TC)n Simple_repeat Simple_repeat 1 54 0 3 842 982 250 9 9 chr3 33797198 33797420 -125802363 + ID_B1 SINE B4 1 222 -2 3 842 324 0 0 0 chr3 33797502 33797538 -125802245 + (CA)n Simple_repeat Simple_repeat 2 37 0 3 842 966 259 72 19 chr3 33797666 33797973 -125801810 - Lx6 LINE L1 0 7460 7138 3 842 446 232 0 39 chr3 33798097 33798200 -125801583 - Lx6 LINE L1 -121 7339 7241 3 842 676 103 0 17 chr3 33798864 33798982 -125800801 + (GAGAA)n Simple_repeat Simple_repeat 5 120 0 3 842 694 269 73 32 chr3 33798993 33799212 -125800571 + B4 SINE B4 14 241 -51 3 842 471 35 0 0 chr3 33799226 33799283 -125800500 + (CA)n Simple_repeat Simple_repeat 1 57 0 3 842 3216 161 33 27 chr3 33799440 33800108 -125799675 - RMER6A LTR ERVK 0 756 85 3 842 336 302 47 41 chr3 33800131 33800300 -125799483 + ID_B1 SINE B4 55 224 0 3 842 619 196 79 14 chr3 33800161 33800301 -125799482 + B1_Mur2 SINE Alu 1 149 0 3 842 477 348 63 0 chr3 33800975 33801133 -125798650 + B3A SINE B2 7 174 -24 3 842 655 270 24 30 chr3 33801151 33801319 -125798464 + ID_B1 SINE B4 50 216 -8 3 842 186 71 0 0 chr3 33802765 33802793 -125796990 + (G)n Simple_repeat Simple_repeat 1 28 0 3 842 571 210 16 8 chr3 33803052 33803177 -125796606 + B1_Mur1 SINE Alu 23 148 -1 3 842 710 273 25 10 chr3 33803599 33803799 -125795984 + ID_B1 SINE B4 7 209 -15 3 842 247 313 48 0 chr3 33805843 33805926 -125793857 + PB1D10 SINE Alu 30 116 -1 3 842 1005 95 7 0 chr3 33806298 33806435 -125793348 + B1_Mus1 SINE Alu 2 139 -9 3 842 272 27 0 26 chr3 33806435 33806473 -125793310 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 4 842 216 180 140 0 chr3 33806891 33806941 -125792842 - L2a LINE L2 -17 3409 3353 4 842 426 39 0 0 chr3 33807288 33807340 -125792443 + (TG)n Simple_repeat Simple_repeat 2 53 0 4 842 187 257 84 14 chr3 33807637 33807708 -125792075 + L3b LINE CR1 190 265 -217 4 842 252 0 0 0 chr3 33807961 33807989 -125791794 + (CA)n Simple_repeat Simple_repeat 2 29 0 4 842 335 321 87 7 chr3 33808442 33808580 -125791203 + B1F1 SINE Alu 1 149 0 4 842 537 244 78 62 chr3 33808586 33808765 -125791018 + B3A SINE B2 1 182 -16 4 842 21 0 0 0 chr3 33809044 33809065 -125790718 + AT_rich Low_complexity Low_complexity 1 21 0 4 842 690 246 28 103 chr3 33809214 33809427 -125790356 - B3A SINE B2 0 198 2 4 842 2851 53 3 0 chr3 33809503 33809845 -125789938 - ORR1A1 LTR MaLR 0 346 4 4 842 318 293 37 13 chr3 33809893 33810036 -125789747 + B3A SINE B2 1 152 -46 4 842 200 167 21 0 chr3 33810095 33810143 -125789640 + GA-rich Low_complexity Low_complexity 2 50 0 4 842 596 258 66 0 chr3 33810143 33810310 -125789473 + Lx9 LINE L1 7325 7502 -142 4 842 1015 257 90 20 chr3 33812541 33812887 -125786896 - MTEb LTR MaLR -9 370 1 4 842 527 272 20 26 chr3 33813438 33813589 -125786194 + RSINE1 SINE B4 1 150 -15 4 842 438 341 69 51 chr3 33814265 33814375 -125785408 + L1MC4 LINE L1 1944 2053 -4162 4 842 1247 113 11 16 chr3 33814375 33814563 -125785220 + B2_Mm2 SINE B2 1 187 -8 4 842 438 341 69 51 chr3 33814563 33814786 -125784997 + L1MC4 LINE L1 2054 2283 -3932 4 842 878 189 136 5 chr3 33814806 33814997 -125784786 - B3 SINE B2 0 216 1 4 842 408 214 8 51 chr3 33815086 33815204 -125784579 + MTD LTR MaLR 299 411 -8 4 842 816 242 166 16 chr3 33815281 33815588 -125784195 - ORR1E LTR MaLR -1 358 6 4 842 277 237 17 0 chr3 33816445 33816504 -125783279 - B4A SINE B4 -9 283 224 4 843 689 244 126 10 chr3 33817411 33817610 -125782173 + ID_B1 SINE B4 3 224 0 4 843 629 169 11 22 chr3 33818870 33819051 -125780732 + (TG)n Simple_repeat Simple_repeat 2 180 0 4 843 302 211 9 0 chr3 33819069 33819183 -125780600 + (TG)n Simple_repeat Simple_repeat 1 115 0 4 843 576 213 156 98 chr3 33819183 33819289 -125780494 - B4 SINE B4 0 292 210 4 843 1228 231 68 15 chr3 33819289 33819628 -125780155 - ORR1E LTR MaLR -2 357 1 4 843 576 213 156 98 chr3 33819628 33819797 -125779986 - B4 SINE B4 -83 209 1 4 843 291 85 0 0 chr3 33819841 33819888 -125779895 + (CATA)n Simple_repeat Simple_repeat 1 47 0 4 843 1333 273 82 21 chr3 33820462 33820748 -125779035 - Lx7 LINE L1 -330 7366 7078 4 843 447 35 0 0 chr3 33820748 33820805 -125778978 + (TG)n Simple_repeat Simple_repeat 2 58 0 4 843 1333 273 82 21 chr3 33820805 33820944 -125778839 - Lx7 LINE L1 -619 7077 6917 4 843 615 306 144 39 chr3 33820945 33821410 -125778373 - RLTR12B LTR ERVK -14 514 1 4 843 1401 211 117 32 chr3 33821410 33821805 -125777978 - Lx7 LINE L1 -775 6921 6518 4 843 738 219 73 26 chr3 33821839 33822031 -125777752 - Lx8 LINE L1 -352 7121 6921 4 843 298 257 29 0 chr3 33822172 33822242 -125777541 - RSINE1 SINE B4 -19 146 75 4 843 207 0 0 0 chr3 33822268 33822291 -125777492 + (GTTTG)n Simple_repeat Simple_repeat 2 24 0 4 843 1729 194 6 3 chr3 33822294 33822619 -125777164 - Lx5 LINE L1 0 7050 6725 4 843 31 0 0 0 chr3 33822721 33822752 -125777031 + AT_rich Low_complexity Low_complexity 1 31 0 4 843 3036 74 5 5 chr3 33823668 33824064 -125775719 + MTA_Mm LTR MaLR 1 396 0 4 843 688 238 50 0 chr3 33824076 33824257 -125775526 + B3 SINE B2 1 190 -26 4 843 428 238 9 19 chr3 33824567 33824674 -125775109 - PB1D10 SINE Alu -1 116 11 4 843 400 309 121 9 chr3 33825034 33825357 -125774426 + L1M5 LINE L1 4456 4814 -1332 4 843 563 294 133 12 chr3 33825581 33825836 -125773947 + B4 SINE B4 7 292 0 4 843 5160 193 61 45 chr3 33826380 33828258 -125771525 + L1_Mur3 LINE L1 314 2220 -3660 4 843 1870 124 90 3 chr3 33828258 33828558 -125771225 - ORR1A3 LTR MaLR 0 326 1 4 843 5160 171 46 41 chr3 33828558 33828715 -125771068 + L1_Mur3 LINE L1 2221 2381 -3499 4 843 36526 63 2 13 chr3 33828718 33834882 -125764901 - L1Md_F2 LINE L1 -12 6570 481 4 843 14785 152 37 35 chr3 33834877 33837199 -125762584 + L1_Mur3 LINE L1 2364 4739 -1141 4 843 1225 55 0 0 chr3 33837199 33837345 -125762438 + B1_Mm SINE Alu 2 147 0 4 843 14785 152 37 35 chr3 33837345 33837489 -125762294 + L1_Mur3 LINE L1 4740 4823 -1057 4 843 333 0 0 0 chr3 33837489 33837526 -125762257 + (TG)n Simple_repeat Simple_repeat 2 38 0 4 843 14785 152 37 35 chr3 33837526 33837887 -125761896 + L1_Mur3 LINE L1 4824 5197 -683 4 843 180 0 0 0 chr3 33839122 33839142 -125760641 + (T)n Simple_repeat Simple_repeat 1 20 0 4 843 473 333 47 7 chr3 33839145 33839293 -125760490 - B3A SINE B2 0 198 45 4 843 7507 178 58 13 chr3 33839293 33840690 -125759093 - Lx5 LINE L1 -4 7046 5587 4 843 3648 130 19 8 chr3 33840699 33841295 -125758488 + L1_Mus1 LINE L1 4551 5152 -725 4 843 4479 14 2 0 chr3 33841295 33841787 -125757996 + MT2_Mm LTR ERVL 1 493 0 4 843 48320 16 6 0 chr3 33841787 33847113 -125752670 + MERVL-int LTR ERVL 1 5360 -125 4 843 362 167 46 35 chr3 33847113 33847200 -125752583 + ORR1A3-int LTR MaLR 553 640 -1323 4 843 321 0 0 0 chr3 33847200 33847238 -125752545 + MERVL-int LTR ERVL 5448 5485 0 4 843 4479 14 2 0 chr3 33847238 33847730 -125752053 + MT2_Mm LTR ERVL 1 493 0 4 843 2883 154 33 18 chr3 33847730 33847861 -125751922 + L1_Mus1 LINE L1 5148 5276 -601 4 843 282 29 0 0 chr3 33847861 33847896 -125751887 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 4 843 1081 62 7 46 chr3 33847896 33848047 -125751736 - B1_Mus1 SINE Alu -2 146 2 4 843 2883 159 34 19 chr3 33848047 33848447 -125751336 + L1_Mus1 LINE L1 5277 5693 -1283 4 843 559 180 9 9 chr3 33848581 33848693 -125751090 + PB1D9 SINE Alu 1 112 -8 4 843 23 33 0 0 chr3 33849113 33849143 -125750640 + AT_rich Low_complexity Low_complexity 1 30 0 4 843 288 212 96 126 chr3 33849163 33849298 -125750485 - B3 SINE B2 -6 210 80 4 843 1201 61 0 0 chr3 33849355 33849502 -125750281 + B1_Mus2 SINE Alu 1 147 0 4 843 231 167 0 0 chr3 33849502 33849544 -125750239 + A-rich Low_complexity Low_complexity 1 42 0 4 843 409 296 79 29 chr3 33849870 33850009 -125749774 - B3 SINE B2 -5 211 66 4 843 192 77 0 0 chr3 33850139 33850165 -125749618 + (T)n Simple_repeat Simple_repeat 1 26 0 4 843 22 35 0 0 chr3 33850245 33850274 -125749509 + AT_rich Low_complexity Low_complexity 1 29 0 4 843 279 0 0 0 chr3 33850279 33850310 -125749473 + (TG)n Simple_repeat Simple_repeat 2 32 0 4 843 399 186 242 17 chr3 33850331 33850451 -125749332 - B3A SINE B2 -49 149 3 4 843 1427 182 125 0 chr3 33850533 33850829 -125748954 + Lx2B LINE L1 6666 6998 -2 4 843 237 108 0 0 chr3 33851110 33851147 -125748636 + (TG)n Simple_repeat Simple_repeat 2 38 0 4 843 594 280 161 0 chr3 33851160 33851353 -125748430 - B4 SINE B4 -2 290 67 4 843 540 106 0 0 chr3 33851688 33851782 -125748001 + (TG)n Simple_repeat Simple_repeat 2 95 0 4 843 3952 73 19 31 chr3 33851916 33852456 -125747327 + RMER16 LTR ERVK 1 533 0 4 843 298 215 0 44 chr3 33853177 33853245 -125746538 + B4 SINE B4 4 68 -224 4 843 180 111 0 0 chr3 33853422 33853449 -125746334 + (GGAA)n Simple_repeat Simple_repeat 4 30 0 4 843 210 250 0 16 chr3 33853863 33853924 -125745859 + G-rich Low_complexity Low_complexity 3 62 0 4 843 237 363 11 0 chr3 33856043 33856079 -125743704 - ID_B1 SINE B4 -105 119 83 4 843 357 24 0 0 chr3 33856079 33856121 -125743662 + (TG)n Simple_repeat Simple_repeat 2 43 0 4 843 237 363 11 0 chr3 33856121 33856175 -125743608 - ID SINE ID -142 82 29 4 843 787 255 41 0 chr3 33856509 33856705 -125743078 + ID_B1 SINE B4 2 205 -19 4 843 1057 173 84 4 chr3 33856882 33857120 -125742663 + Lx9 LINE L1 7285 7541 -103 4 843 1595 236 51 70 chr3 33857114 33857802 -125741981 - RMER1B Other Other -478 588 15 4 843 207 0 0 0 chr3 33858126 33858149 -125741634 + (TTTTG)n Simple_repeat Simple_repeat 5 27 0 4 843 378 276 0 0 chr3 33858179 33858277 -125741506 + PB1D10 SINE Alu 1 98 -19 4 843 323 239 119 113 chr3 33858618 33858769 -125741014 + RSINE1 SINE B4 11 162 -3 4 843 470 276 88 21 chr3 33859635 33859838 -125739945 - B4 SINE B4 -3 289 57 4 843 717 194 18 0 chr3 33860572 33860742 -125739041 + GA-rich Low_complexity Low_complexity 2 174 0 4 843 477 0 0 0 chr3 33860745 33860798 -125738985 + (GAAAA)n Simple_repeat Simple_repeat 1 53 0 4 843 288 306 31 0 chr3 33861060 33861158 -125738625 + B1F SINE Alu 7 107 -42 4 843 563 205 44 16 chr3 33861584 33861723 -125738060 + B1_Mur1 SINE Alu 4 141 -8 4 843 702 177 14 21 chr3 33861745 33861889 -125737894 - ORR1D1 LTR MaLR -231 143 1 4 843 261 0 0 0 chr3 33861898 33861927 -125737856 + (CA)n Simple_repeat Simple_repeat 2 30 0 4 843 188 79 53 0 chr3 33861927 33861965 -125737818 + (TAAA)n Simple_repeat Simple_repeat 3 42 0 4 843 212 222 43 87 chr3 33861969 33862038 -125737745 + ID_B1 SINE B4 96 161 -63 4 843 21 0 0 0 chr3 33862431 33862452 -125737331 + AT_rich Low_complexity Low_complexity 1 21 0 4 843 656 189 91 0 chr3 33862515 33862647 -125737136 + B1_Mur2 SINE Alu 3 146 -3 4 843 449 227 241 17 chr3 33862777 33863014 -125736769 - B4A SINE B4 -1 291 2 4 843 1810 162 56 43 chr3 33864056 33864429 -125735354 - ORR1C1 LTR MaLR 0 378 1 4 843 700 234 0 14 chr3 33864576 33864719 -125735064 - B4 SINE B4 -68 224 84 4 843 434 264 128 7 chr3 33865013 33865154 -125734629 - Lx8 LINE L1 -612 6861 6704 4 843 453 225 0 55 chr3 33865156 33865283 -125734500 - B3 SINE B2 -28 188 69 4 843 348 296 9 156 chr3 33865283 33865495 -125734288 - Lx8 LINE L1 -909 6564 6384 4 843 425 205 0 0 chr3 33865500 33865583 -125734200 - B4 SINE B4 -208 84 2 4 843 897 257 5 19 chr3 33866364 33866570 -125733213 - B3 SINE B2 -4 212 10 4 843 238 220 17 17 chr3 33866761 33866821 -125732962 + (TG)n Simple_repeat Simple_repeat 1 60 0 4 843 786 260 14 5 chr3 33867330 33867539 -125732244 + B4A SINE B4 8 218 -74 4 843 381 93 0 0 chr3 33867539 33867593 -125732190 + (TGAA)n Simple_repeat Simple_repeat 3 56 0 4 843 1966 260 112 2 chr3 33867594 33868154 -125731629 + Lx8 LINE L1 6234 6855 -618 4 843 22 56 0 0 chr3 33868157 33868193 -125731590 + AT_rich Low_complexity Low_complexity 1 36 0 4 843 327 279 0 0 chr3 33868398 33868502 -125731281 + (CA)n Simple_repeat Simple_repeat 1 104 0 5 843 1360 279 53 12 chr3 33868535 33868970 -125730813 - Lx7 LINE L1 -385 7311 6854 5 843 452 271 39 6 chr3 33869328 33869484 -125730299 + Lx8 LINE L1 6987 7147 -326 4 843 869 70 51 15 chr3 33869696 33870092 -125729691 + (CA)n Simple_repeat Simple_repeat 1 410 0 5 843 324 319 21 0 chr3 33870495 33870589 -125729194 + MER63D DNA AcHobo 9 104 -957 5 843 728 234 0 7 chr3 33870739 33870885 -125728898 - B1F SINE Alu -2 147 3 5 843 661 261 101 29 chr3 33870949 33871158 -125728625 + B4 SINE B4 68 291 -1 5 843 206 341 100 31 chr3 33871192 33871322 -125728461 - MIR SINE MIR -22 240 102 5 843 405 287 30 128 chr3 33872761 33872821 -125726962 + ID SINE ID 37 80 -144 5 843 494 255 38 17 chr3 33872821 33872944 -125726839 + B1F SINE Alu 1 127 0 5 843 421 273 36 9 chr3 33873179 33873290 -125726493 + MTE2b LTR MaLR 174 287 -92 5 843 242 174 30 20 chr3 33873661 33873761 -125726022 + (TTTG)n Simple_repeat Simple_repeat 2 102 0 5 843 1215 48 0 0 chr3 33873813 33873959 -125725824 + B1_Mus1 SINE Alu 2 147 -1 5 843 193 70 22 44 chr3 33873959 33874004 -125725779 + (CAAA)n Simple_repeat Simple_repeat 1 44 0 5 843 254 286 48 0 chr3 33874008 33874092 -125725691 - B1F1 SINE Alu -61 88 1 5 843 894 193 96 0 chr3 33874655 33874852 -125724931 + B3 SINE B2 1 216 0 5 843 300 331 24 6 chr3 33874973 33875143 -125724640 + Charlie1a DNA MER1_type 753 925 -530 5 843 189 0 0 0 chr3 33875862 33875883 -125723900 + (TTAGGG)n Simple_repeat Simple_repeat 2 22 0 5 843 1515 35 0 5 chr3 33875951 33876152 -125723631 + MTB LTR MaLR 201 400 0 5 843 379 286 9 79 chr3 33878034 33878148 -125721635 + B1F2 SINE Alu 3 108 -41 5 843 270 0 0 0 chr3 33878149 33878179 -125721604 + (TG)n Simple_repeat Simple_repeat 2 31 0 5 843 475 250 0 73 chr3 33878191 33878342 -125721441 - L1MA6 LINE L1 -19 6272 6133 5 843 360 209 11 55 chr3 33878408 33878499 -125721284 - B3A SINE B2 -47 151 65 5 843 1118 260 44 10 chr3 33878607 33878995 -125720788 - L1MA6 LINE L1 -417 5883 5483 5 843 450 262 19 0 chr3 33879022 33879162 -125720621 - B1F1 SINE Alu 0 149 1 5 843 232 273 30 0 chr3 33879191 33879257 -125720526 + L1_Rod LINE L1 5693 5760 -87 5 843 1319 77 33 0 chr3 33879378 33879559 -125720224 - B2_Mm2 SINE B2 -8 187 1 5 843 3755 91 63 167 chr3 33879627 33879861 -125719922 + RLTR33 LTR ERVK 1 198 -480 5 843 1032 130 0 0 chr3 33879861 33880007 -125719776 - B1_Mus1 SINE Alu 0 148 3 5 843 3755 91 63 167 chr3 33880007 33880319 -125719464 + RLTR33 LTR ERVK 199 526 -152 5 843 1193 61 0 7 chr3 33880319 33880468 -125719315 + B1_Mus1 SINE Alu 1 148 0 5 843 3755 91 63 167 chr3 33880468 33880676 -125719107 + RLTR33 LTR ERVK 527 678 0 5 843 4210 33 0 2 chr3 33880798 33881281 -125718502 + LTRIS_Mm LTR ERV1 1 482 0 5 843 311 286 174 37 chr3 33881455 33881673 -125718110 + L1MB8 LINE L1 135 382 -6018 5 843 444 302 140 23 chr3 33881808 33882194 -125717589 + L1MB8 LINE L1 574 1004 -5396 5 843 1224 43 0 0 chr3 33882578 33882719 -125717064 + B1_Mm SINE Alu 1 141 -6 5 843 306 0 0 0 chr3 33882721 33882755 -125717028 + (TAAAA)n Simple_repeat Simple_repeat 2 35 0 5 843 225 0 0 0 chr3 33882758 33882783 -125717000 + (TAAA)n Simple_repeat Simple_repeat 4 28 0 5 843 373 306 26 79 chr3 33882788 33883155 -125716628 + L1MB8 LINE L1 1518 1855 -4560 5 843 278 0 0 51 chr3 33883210 33883249 -125716534 + (TCTCTG)n Simple_repeat Simple_repeat 2 38 0 5 843 675 249 49 19 chr3 33883258 33883463 -125716320 - B4A SINE B4 0 292 82 5 843 4902 176 83 12 chr3 33883484 33883770 -125716013 - Lx9 LINE L1 -9 7635 7320 5 843 356 0 23 0 chr3 33883770 33883814 -125715969 + (TTTG)n Simple_repeat Simple_repeat 4 48 0 5 843 4902 176 83 12 chr3 33883814 33884476 -125715307 - Lx9 LINE L1 -325 7319 6620 5 843 1720 223 38 25 chr3 33884480 33884875 -125714908 + Lx9 LINE L1 5587 5986 -1658 5 843 1973 144 31 28 chr3 33884886 33885244 -125714539 + ORR1B2 LTR MaLR 1 359 -8 5 843 554 277 129 46 chr3 33885259 33885562 -125714221 + Lx9 LINE L1 6106 6433 -1211 5 843 1275 97 23 0 chr3 33885736 33885911 -125713872 + B2_Mm1t SINE B2 1 179 -14 5 843 342 121 34 0 chr3 33885924 33886030 -125713753 + B2_Mm2 SINE B2 47 191 -4 5 843 258 336 43 0 chr3 33886031 33886147 -125713636 + L1MB8 LINE L1 4292 4412 -1907 5 843 533 239 8 0 chr3 33886234 33886351 -125713432 + B1_Mur1 SINE Alu 23 140 -9 5 843 745 283 6 0 chr3 33886354 33886527 -125713256 + ID_B1 SINE B4 49 222 -2 5 843 181 75 50 0 chr3 33886528 33886568 -125713215 + (CAAAAA)n Simple_repeat Simple_repeat 5 46 0 5 843 859 238 48 5 chr3 33886648 33886855 -125712928 + B3 SINE B2 1 216 0 5 843 569 257 68 103 chr3 33886879 33887078 -125712705 + L1MB8 LINE L1 4921 5122 -1197 5 843 485 261 170 0 chr3 33887078 33887266 -125712517 + ID_B1 SINE B4 2 221 -3 5 843 569 257 68 103 chr3 33887266 33887387 -125712396 + L1MB8 LINE L1 5123 5230 -1089 5 843 472 205 42 1 chr3 33887398 33887508 -125712275 - B1_Mur3 SINE Alu -1 119 5 5 843 1086 127 193 0 chr3 33887605 33887786 -125711997 + B3 SINE B2 1 216 0 5 843 492 307 101 16 chr3 33887896 33888154 -125711629 + L1MB8 LINE L1 5979 6258 -93 5 843 262 309 12 0 chr3 33888576 33888657 -125711126 + ID4 SINE ID 2 83 0 5 843 488 265 40 13 chr3 33888761 33888910 -125710873 - RSINE1 SINE B4 -10 155 3 5 843 518 208 108 0 chr3 33889214 33889256 -125710527 + B1_Mur2 SINE Alu 6 48 -101 5 843 209 20 160 0 chr3 33889256 33889306 -125710477 + (CAGG)n Simple_repeat Simple_repeat 2 59 0 5 843 518 208 108 0 chr3 33889306 33889383 -125710400 + B1_Mur2 SINE Alu 49 137 -12 5 843 217 278 28 93 chr3 33889428 33889492 -125710291 + B1F1 SINE Alu 2 58 -91 5 843 283 277 158 69 chr3 33889492 33889694 -125710089 + RLTR9A LTR ERVK 2 221 -147 5 843 310 309 85 35 chr3 33889975 33890116 -125709667 - LTR78 LTR ERV1 -375 929 782 5 843 211 0 28 56 chr3 33890330 33890366 -125709417 + (TTG)n Simple_repeat Simple_repeat 2 36 0 5 843 1264 48 0 13 chr3 33890368 33890517 -125709266 - B1_Mus1 SINE Alu 0 148 2 5 843 227 224 48 84 chr3 33890740 33890823 -125708960 + ID2 SINE ID 2 81 -2 5 843 393 143 86 0 chr3 33890829 33890899 -125708884 + ID_B1 SINE B4 140 215 -9 5 843 285 208 123 14 chr3 33890835 33890908 -125708875 + B1F SINE Alu 68 148 -1 5 843 374 286 233 35 chr3 33890951 33891010 -125708773 + B4A SINE B4 1 79 -213 5 843 1408 162 147 75 chr3 33891010 33891357 -125708426 - ORR1D1 LTR MaLR -2 372 1 5 843 374 286 233 35 chr3 33891357 33891529 -125708254 + B4A SINE B4 80 277 -15 5 843 243 0 0 0 chr3 33891921 33891948 -125707835 + (CA)n Simple_repeat Simple_repeat 2 28 0 5 843 207 0 0 0 chr3 33892101 33892124 -125707659 + (A)n Simple_repeat Simple_repeat 1 23 0 5 843 198 0 0 0 chr3 33892274 33892296 -125707487 + (CAA)n Simple_repeat Simple_repeat 1 22 0 5 843 309 118 0 0 chr3 33894747 33894798 -125704985 + (TG)n Simple_repeat Simple_repeat 1 51 0 5 843 707 234 40 40 chr3 33894813 33894964 -125704819 - RSINE1 SINE B4 -13 152 2 5 843 1174 62 7 53 chr3 33895583 33895735 -125704048 - B1_Mm SINE Alu 0 147 3 5 843 413 219 82 25 chr3 33895739 33895861 -125703922 - B1F2 SINE Alu 0 149 21 5 843 28 29 0 0 chr3 33896469 33896504 -125703279 + AT_rich Low_complexity Low_complexity 1 35 0 5 843 507 270 67 73 chr3 33896773 33896937 -125702846 + RSINE1 SINE B4 3 165 0 5 843 511 148 46 9 chr3 33896942 33897166 -125702617 + (CA)n Simple_repeat Simple_repeat 1 232 0 5 843 280 181 139 0 chr3 33897365 33897437 -125702346 + ID_B1 SINE B4 84 165 -59 5 843 899 242 87 58 chr3 33898000 33898276 -125701507 - B4 SINE B4 -7 285 2 5 843 220 381 47 9 chr3 33898372 33898478 -125701305 + MIRb SINE MIR 1 110 -158 5 843 444 224 109 30 chr3 33898942 33899043 -125700740 - PB1D9 SINE Alu -10 110 2 5 843 620 221 90 22 chr3 33899057 33899257 -125700526 + BGLII_B LTR ERVK 1 208 -214 5 843 288 289 129 29 chr3 33899367 33899506 -125700277 + L1MD3 LINE L1 7521 7673 -322 5 843 387 279 57 29 chr3 33899515 33899655 -125700128 + B1F SINE Alu 5 148 -1 5 843 367 250 54 8 chr3 33899833 33899962 -125699821 + L1MD3 LINE L1 7847 7981 -14 5 843 2700 108 33 9 chr3 33899978 33900333 -125699450 + L1_Mur1 LINE L1 4822 5182 -704 5 843 9170 59 16 97 chr3 33900333 33901677 -125698106 + Lx3_Mus LINE L1 5774 7009 0 5 843 2700 108 33 9 chr3 33901677 33901749 -125698034 + L1_Mur1 LINE L1 5183 5259 -627 5 843 215 337 53 21 chr3 33901874 33901968 -125697815 + PB1D9 SINE Alu 1 97 -23 5 843 341 263 42 0 chr3 33902025 33902120 -125697663 + ID_B1 SINE B4 5 103 -121 5 843 825 222 0 137 chr3 33902127 33902346 -125697437 + B3A SINE B2 4 192 -6 5 843 469 276 0 23 chr3 33902359 33902489 -125697294 + ID_B1 SINE B4 78 204 -20 5 843 186 103 0 0 chr3 33902511 33902540 -125697243 + (GGGA)n Simple_repeat Simple_repeat 2 30 0 5 843 192 179 0 0 chr3 33903303 33903342 -125696441 + CT-rich Low_complexity Low_complexity 1 39 0 5 843 180 111 0 0 chr3 33903673 33903700 -125696083 + (T)n Simple_repeat Simple_repeat 1 27 0 5 843 1068 230 0 0 chr3 33904616 33904807 -125694976 + B3 SINE B2 17 207 -9 5 843 2543 142 13 3 chr3 33905234 33905609 -125694174 + RLTR30 LTR ERV1 1 379 0 5 843 290 247 174 34 chr3 33905688 33905867 -125693916 + MER2 DNA MER2_type 6 209 -136 5 843 959 106 96 42 chr3 33905945 33906112 -125693671 + RLTR14 LTR ERV1 7 182 -200 5 843 463 202 0 101 chr3 33906111 33906210 -125693573 + RLTR14 LTR ERV1 294 382 0 5 843 330 266 64 0 chr3 33906210 33906304 -125693479 + RSINE1 SINE B4 38 137 -28 5 843 22 0 0 0 chr3 33906562 33906584 -125693199 + AT_rich Low_complexity Low_complexity 1 22 0 5 843 236 215 185 0 chr3 33906775 33906840 -125692943 + RLTR9E LTR ERVK 252 328 -81 5 843 608 203 101 36 chr3 33906957 33907095 -125692688 - B1_Mur1 SINE Alu -2 147 1 5 843 301 253 25 51 chr3 33907801 33907880 -125691903 + PB1D10 SINE Alu 34 110 -7 5 843 343 277 53 8 chr3 33908023 33908154 -125691629 + HAL1-2a_MD LINE L1 2345 2481 -543 5 843 531 229 65 95 chr3 33908209 33908378 -125691405 - RSINE1 SINE B4 0 165 2 5 843 776 275 41 7 chr3 33908378 33908597 -125691186 - B4A SINE B4 -65 227 1 5 843 234 0 0 0 chr3 33909128 33909154 -125690629 + (TTTA)n Simple_repeat Simple_repeat 1 26 0 5 843 730 281 94 20 chr3 33909499 33909702 -125690081 - ID_B1 SINE B4 -4 220 3 6 843 1461 78 11 0 chr3 33909762 33909941 -125689842 - B2_Mm1t SINE B2 -11 182 2 6 843 341 169 26 0 chr3 33910074 33910151 -125689632 + (CATATA)n Simple_repeat Simple_repeat 5 83 0 6 843 314 257 98 10 chr3 33910270 33910372 -125689411 + PB1D10 SINE Alu 6 116 -1 6 843 2003 175 39 26 chr3 33910402 33910783 -125689000 + ORR1B1 LTR MaLR 1 386 -8 6 843 1008 199 36 40 chr3 33910804 33911029 -125688754 - ORR1D1 LTR MaLR 0 374 151 6 843 1055 193 48 93 chr3 33911030 33911321 -125688462 + ORR1D1 LTR MaLR 1 278 -96 6 843 1767 152 27 98 chr3 33911331 33911416 -125688367 + RLTR18B LTR ERVK 201 265 -247 6 843 3285 62 26 3 chr3 33911416 33911807 -125687976 + MTB LTR MaLR 1 400 0 6 843 1767 152 27 98 chr3 33911807 33912056 -125687727 + RLTR18B LTR ERVK 266 511 -1 6 843 589 176 0 19 chr3 33912060 33912164 -125687619 + ORR1D1 LTR MaLR 273 374 0 6 843 926 165 2 7 chr3 33912164 33912316 -125687467 - ORR1D1 LTR MaLR -215 155 4 6 843 3564 194 78 9 chr3 33912316 33912845 -125686938 - ORR1D1-int LTR MaLR 0 1370 805 6 843 1198 186 12 98 chr3 33912845 33912932 -125686851 - URR1B DNA MER1_type -1 224 157 6 843 232 48 23 23 chr3 33912932 33912975 -125686808 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 6 843 1244 50 0 0 chr3 33912975 33913114 -125686669 - B1_Mm SINE Alu -8 139 1 6 843 1198 186 12 98 chr3 33913114 33913270 -125686513 - URR1B DNA MER1_type -69 156 2 6 843 3564 194 78 9 chr3 33913270 33913480 -125686303 - ORR1D1-int LTR MaLR -566 804 580 6 843 1238 200 13 186 chr3 33913478 33913524 -125686259 + RLTR11B LTR ERVK 7 47 -406 6 843 2216 216 48 92 chr3 33913524 33914163 -125685620 - RMER19C LTR ERVK 0 611 1 6 843 1238 200 13 186 chr3 33914163 33914638 -125685145 + RLTR11B LTR ERVK 48 438 -15 6 843 2407 220 76 28 chr3 33914654 33915219 -125684564 - ORR1D1-int LTR MaLR -778 592 1 6 843 1919 157 58 30 chr3 33915221 33915583 -125684200 - ORR1D1 LTR MaLR -2 372 1 6 843 572 263 49 35 chr3 33915782 33915924 -125683859 + RSINE1 SINE B4 21 164 -1 6 843 193 270 65 43 chr3 33916018 33916111 -125683672 + MIRc SINE MIR 36 130 -138 6 843 286 267 106 43 chr3 33916395 33916536 -125683247 + L1MB8 LINE L1 5564 5713 -461 6 843 488 284 35 0 chr3 33916905 33917021 -125682762 - B3 SINE B2 -36 180 61 6 843 526 234 85 8 chr3 33917061 33917190 -125682593 - B1_Mur2 SINE Alu -9 140 2 6 843 539 181 151 25 chr3 33917259 33917378 -125682405 - ID_B1 SINE B4 0 224 91 6 843 439 275 95 61 chr3 33917505 33917807 -125681976 + L1MB8 LINE L1 5789 6087 -91 6 843 374 269 18 36 chr3 33917871 33917983 -125681800 + PB1D10 SINE Alu 5 114 -3 6 843 321 198 61 12 chr3 33918350 33918432 -125681351 + PB1D9 SINE Alu 26 111 -9 6 843 226 262 0 0 chr3 33918923 33918984 -125680799 + C-rich Low_complexity Low_complexity 1 61 0 6 843 21 0 0 0 chr3 33919088 33919109 -125680674 + GC_rich Low_complexity Low_complexity 1 21 0 6 843 297 217 18 45 chr3 33919334 33919445 -125680338 + (CGGG)n Simple_repeat Simple_repeat 4 111 0 6 843 25 0 0 0 chr3 33919455 33919480 -125680303 + GC_rich Low_complexity Low_complexity 1 25 0 6 843 183 42 0 0 chr3 33919490 33919514 -125680269 + (CCCG)n Simple_repeat Simple_repeat 4 27 0 6 843 408 228 91 17 chr3 33921042 33921180 -125678603 - B1F SINE Alu -6 143 5 6 843 328 260 25 25 chr3 33921716 33921795 -125677988 - B1F1 SINE Alu -70 79 1 6 843 22 0 0 0 chr3 33921832 33921854 -125677929 + AT_rich Low_complexity Low_complexity 1 22 0 6 843 1055 141 69 21 chr3 33922000 33922189 -125677594 + URR1A DNA MER1_type 29 226 0 6 843 1054 229 64 147 chr3 33922952 33923361 -125676422 - MTE2a LTR MaLR -1 378 4 6 843 1185 45 0 0 chr3 33923652 33923786 -125675997 - B1_Mus1 SINE Alu -13 135 2 6 843 395 221 13 0 chr3 33924150 33924227 -125675556 + ID_B1 SINE B4 80 157 -67 6 843 342 240 26 13 chr3 33924237 33924313 -125675470 + RSINE1 SINE B4 21 97 -68 6 843 270 292 180 0 chr3 33924545 33924634 -125675149 - PB1D10 SINE Alu -8 109 5 6 843 306 73 0 0 chr3 33924864 33924905 -125674878 + (TTTTC)n Simple_repeat Simple_repeat 4 44 0 6 843 1241 35 14 0 chr3 33924922 33925067 -125674716 - B1_Mus2 SINE Alu 0 147 1 6 843 237 304 0 18 chr3 33925516 33925573 -125674210 - RSINE1 SINE B4 -106 59 4 6 843 1056 112 136 0 chr3 33925631 33925800 -125673983 - B2_Mm1a SINE B2 0 193 2 6 843 682 177 8 31 chr3 33925813 33925941 -125673842 + B1_Mur3 SINE Alu 25 149 0 6 843 429 254 132 0 chr3 33926262 33926376 -125673407 - ID_B1 SINE B4 -4 220 92 6 843 199 114 22 22 chr3 33926671 33926700 -125673083 + T-rich Low_complexity Low_complexity 16 45 0 6 843 1696 42 5 0 chr3 33926700 33926891 -125672892 - B2_Mm1t SINE B2 0 193 2 6 843 199 114 22 22 chr3 33926891 33926906 -125672877 + T-rich Low_complexity Low_complexity 1 15 0 6 843 1383 99 16 16 chr3 33927667 33927852 -125671931 + B2_Mm2 SINE B2 2 186 -9 6 843 330 315 0 44 chr3 33928140 33928253 -125671530 - PB1D10 SINE Alu 0 117 10 6 843 925 156 13 26 chr3 33928281 33928432 -125671351 - B1_Mur3 SINE Alu 0 149 1 6 843 427 322 39 64 chr3 33928846 33929064 -125670719 + B4A SINE B4 87 292 0 6 843 237 98 0 0 chr3 33929915 33929956 -125669827 + (T)n Simple_repeat Simple_repeat 1 41 0 6 843 250 330 84 42 chr3 33930231 33930326 -125669457 + B4A SINE B4 52 150 -142 6 843 387 286 0 0 chr3 33930271 33930362 -125669421 + B1F SINE Alu 11 101 -48 6 843 341 248 93 19 chr3 33930623 33930730 -125669053 - Kanga1a DNA Tc2 -424 330 216 6 843 302 242 65 0 chr3 33930750 33930852 -125668931 - Kanga1a DNA Tc2 -594 160 36 6 843 204 125 0 0 chr3 33931295 33931327 -125668456 + (TTA)n Simple_repeat Simple_repeat 1 32 0 6 843 668 247 20 20 chr3 33931418 33931567 -125668216 - B1_Mur2 SINE Alu 0 149 1 6 843 22 0 0 0 chr3 33931569 33931591 -125668192 + AT_rich Low_complexity Low_complexity 1 22 0 6 843 375 221 51 31 chr3 33931600 33931698 -125668085 - B1_Mur2 SINE Alu 0 149 50 6 843 180 111 0 0 chr3 33931708 33931735 -125668048 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 6 843 1520 40 0 11 chr3 33931762 33931938 -125667845 - B2_Mm2 SINE B2 -19 176 3 6 843 469 256 30 37 chr3 33931941 33932075 -125667708 - B3A SINE B2 -2 196 64 6 843 450 216 0 97 chr3 33932153 33932266 -125667517 - RSINE1 SINE B4 -46 119 18 6 843 508 274 115 35 chr3 33932312 33932441 -125667342 + B3A SINE B2 1 144 -54 6 843 543 101 0 0 chr3 33932441 33932520 -125667263 + (TA)n Simple_repeat Simple_repeat 2 80 0 6 843 508 281 77 44 chr3 33932520 33932593 -125667190 + B3A SINE B2 125 195 0 6 843 27 0 0 0 chr3 33934431 33934458 -125665325 + AT_rich Low_complexity Low_complexity 1 27 0 6 843 323 333 60 8 chr3 33934473 33934606 -125665177 - B1F SINE Alu -7 142 3 6 843 244 272 172 11 chr3 33934720 33934813 -125664970 - PB1D10 SINE Alu -9 108 1 6 843 280 278 30 91 chr3 33934883 33934896 -125664887 + MT2B LTR ERVL 153 243 -356 6 843 433 179 36 0 chr3 33934896 33934980 -125664803 + PB1D9 SINE Alu 1 87 -33 6 843 1232 177 85 45 chr3 33934981 33935293 -125664490 + RLTR20C LTR ERVK 206 541 0 6 843 1017 16 0 23 chr3 33936030 33936158 -125663625 + B1_Mus1 SINE Alu 24 148 0 6 843 210 71 0 0 chr3 33936158 33936186 -125663597 + (A)n Simple_repeat Simple_repeat 1 28 0 6 843 1156 201 132 4 chr3 33936368 33936673 -125663110 + MYSERV16_I-int LTR ERVK 1 313 -2013 6 843 478 327 77 19 chr3 33937388 33937544 -125662239 - RSINE1 SINE B4 0 165 1 6 843 269 229 86 0 chr3 33938032 33938102 -125661681 - ID_B1 SINE B4 -16 208 133 6 843 240 276 79 0 chr3 33938116 33938192 -125661591 - ID SINE ID -141 83 2 6 843 365 296 50 50 chr3 33938198 33938337 -125661446 - B1F1 SINE Alu 0 149 11 6 843 441 266 88 0 chr3 33939416 33939529 -125660254 - B3 SINE B2 -11 205 83 6 843 213 213 0 60 chr3 33939528 33939578 -125660205 - B2_Mm1t SINE B2 -146 47 1 6 843 23 33 0 0 chr3 33940779 33940809 -125658974 + AT_rich Low_complexity Low_complexity 1 30 0 6 843 891 304 86 8 chr3 33940979 33941341 -125658442 - Lx8 LINE L1 -238 7235 6846 6 843 1088 225 186 3 chr3 33941503 33941815 -125657968 - MTEa LTR MaLR -10 369 1 6 843 1467 201 79 65 chr3 33941998 33942366 -125657417 + ORR1D1 LTR MaLR 2 374 0 6 843 647 56 48 0 chr3 33942614 33942711 -125657072 - B1_Mus2 SINE Alu -17 103 1 6 843 723 175 26 71 chr3 33942720 33942874 -125656909 - B1_Mm SINE Alu 0 147 1 6 843 213 65 0 0 chr3 33942876 33942907 -125656876 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 6 843 32 67 0 0 chr3 33943291 33943351 -125656432 + AT_rich Low_complexity Low_complexity 1 60 0 6 843 283 268 172 97 chr3 33943631 33943817 -125655966 + B4A SINE B4 4 203 -89 6 843 291 271 20 40 chr3 33944350 33944450 -125655333 + ID_B1 SINE B4 123 220 -4 6 843 43 35 0 0 chr3 33944609 33944666 -125655117 + AT_rich Low_complexity Low_complexity 1 57 0 6 843 21 36 0 0 chr3 33944748 33944776 -125655007 + AT_rich Low_complexity Low_complexity 1 28 0 6 843 240 220 61 81 chr3 33945798 33945897 -125653886 + MER57E2 LTR ERV1 15 111 -291 6 843 277 183 147 21 chr3 33947478 33947573 -125652210 - L1MB2 LINE L1 -83 6088 5982 6 844 235 299 14 43 chr3 33948776 33948846 -125650937 - ID4 SINE ID -3 80 13 6 844 276 373 84 26 chr3 33950156 33950310 -125649473 + B4A SINE B4 55 217 -75 6 844 22 0 0 0 chr3 33950592 33950614 -125649169 + AT_rich Low_complexity Low_complexity 1 22 0 6 844 336 230 42 16 chr3 33950855 33950958 -125648825 - ID4_ SINE ID -43 109 3 6 844 258 56 0 0 chr3 33951158 33951194 -125648589 + (T)n Simple_repeat Simple_repeat 1 36 0 6 844 414 0 0 0 chr3 33953785 33953831 -125645952 + (CA)n Simple_repeat Simple_repeat 2 47 0 6 844 592 253 162 95 chr3 33954178 33954357 -125645426 - B3 SINE B2 -6 210 1 6 844 233 302 80 80 chr3 33954573 33954724 -125645059 - RSINE1 SINE B4 -14 151 1 6 844 357 261 14 0 chr3 33954803 33954872 -125644911 - B1F1 SINE Alu -75 74 5 6 844 273 232 0 0 chr3 33955918 33955987 -125643796 + CT-rich Low_complexity Low_complexity 2 70 0 7 844 306 73 0 0 chr3 33956395 33956436 -125643347 + (CA)n Simple_repeat Simple_repeat 2 42 0 7 844 1085 44 0 28 chr3 33958214 33958355 -125641428 + B1_Mus1 SINE Alu 2 138 -10 7 844 1107 75 0 7 chr3 33959432 33959579 -125640204 + B1_Mus2 SINE Alu 1 146 -1 7 844 21 71 0 0 chr3 33960580 33960622 -125639161 + AT_rich Low_complexity Low_complexity 1 42 0 7 844 594 297 70 3 chr3 33961323 33961497 -125638286 + B3A SINE B2 1 180 -36 7 844 382 297 63 28 chr3 33962592 33962734 -125637049 - MER2 DNA MER2_type -106 239 93 7 844 228 273 0 0 chr3 33968779 33968834 -125630949 + T-rich Low_complexity Low_complexity 1 55 0 7 844 238 315 0 69 chr3 33969850 33969908 -125629875 - ID2 SINE ID -28 55 2 7 844 1183 56 0 0 chr3 33970096 33970238 -125629545 - B1_Mus2 SINE Alu -5 142 1 7 844 189 0 0 0 chr3 33971135 33971156 -125628627 + (T)n Simple_repeat Simple_repeat 1 21 0 7 844 1225 112 27 0 chr3 33971710 33971898 -125627885 - B2_Mm2 SINE B2 -2 193 1 7 844 317 270 43 0 chr3 33972452 33972532 -125627251 - RSINE1 SINE B4 -202 90 7 7 844 221 245 200 20 chr3 33973175 33973275 -125626508 - RSINE1 SINE B4 -43 122 5 7 844 233 311 221 31 chr3 33973719 33973945 -125625838 + B4 SINE B4 1 269 -23 7 844 685 207 37 22 chr3 33974668 33974830 -125624953 - B3 SINE B2 -15 201 40 7 844 21 0 0 0 chr3 33974846 33974867 -125624916 + AT_rich Low_complexity Low_complexity 1 21 0 7 844 456 188 11 23 chr3 33975863 33975950 -125623833 + B1_Mur2 SINE Alu 52 137 -12 7 844 254 260 211 39 chr3 33979398 33979502 -125620281 - PB1 SINE Alu -2 125 4 7 844 449 244 0 63 chr3 33979553 33979680 -125620103 + PB1D9 SINE Alu 1 119 -1 7 844 399 21 0 0 chr3 33981286 33981334 -125618449 + (TG)n Simple_repeat Simple_repeat 2 49 0 7 844 690 232 94 48 chr3 33981751 33982278 -125617505 - L1M3 LINE L1 -646 5534 4970 7 844 364 331 0 55 chr3 33982451 33982579 -125617204 - MLT1B LTR MaLR -7 383 263 7 844 230 294 0 14 chr3 33984007 33984076 -125615707 + CT-rich Low_complexity Low_complexity 4 71 0 7 844 2262 110 6 0 chr3 33984076 33984395 -125615388 + ORR1A2 LTR MaLR 1 321 -6 7 844 225 349 15 0 chr3 33984416 33984482 -125615301 - ID4_ SINE ID -14 69 3 7 844 289 287 69 9 chr3 33984602 33984718 -125615065 + L1M3c LINE L1 1 123 -6018 7 844 256 327 50 0 chr3 33984795 33984896 -125614887 + L1M3c LINE L1 292 397 -5744 7 844 252 318 35 23 chr3 33985011 33985098 -125614685 + B3 SINE B2 114 201 -15 7 844 218 116 23 0 chr3 33985104 33985147 -125614636 + (CA)n Simple_repeat Simple_repeat 1 44 0 7 844 23 33 0 0 chr3 33985732 33985762 -125614021 + AT_rich Low_complexity Low_complexity 1 30 0 7 844 1081 275 66 34 chr3 33985853 33986045 -125613738 + L1_Rod LINE L1 1282 1472 -4375 7 844 3272 41 5 2 chr3 33986045 33986440 -125613343 + MTA_Mm LTR MaLR 1 396 0 7 844 1081 275 66 34 chr3 33986440 33986655 -125613128 + L1_Rod LINE L1 1473 1694 -4153 7 844 405 0 0 0 chr3 33986655 33986700 -125613083 + (CA)n Simple_repeat Simple_repeat 2 46 0 7 844 369 0 0 0 chr3 33986700 33986740 -125613043 + (GA)n Simple_repeat Simple_repeat 2 42 0 7 844 1081 275 66 34 chr3 33986740 33986952 -125612831 + L1_Rod LINE L1 1695 1922 -3925 7 844 340 274 97 13 chr3 33987001 33987238 -125612545 + L1M2 LINE L1 4987 5243 -900 7 844 222 262 73 24 chr3 33987621 33987703 -125612080 + PB1D7 SINE Alu 35 120 0 7 844 423 246 183 5 chr3 33987789 33987997 -125611786 + L1MB1 LINE L1 5820 6064 -104 7 844 1463 239 94 0 chr3 33988053 33988384 -125611399 + ORR1D2 LTR MaLR 6 367 -3 7 844 262 312 89 0 chr3 33988386 33988498 -125611285 + L1MA9 LINE L1 6127 6248 -64 7 844 5130 145 58 15 chr3 33988521 33989496 -125610287 - Lx3C LINE L1 -2 6974 5958 7 844 7213 154 18 8 chr3 33989518 33990880 -125608903 - L1_Mur1 LINE L1 -2728 3158 1784 7 844 221 255 0 0 chr3 33991165 33991212 -125608571 - BC1_Mm scRNA scRNA -77 75 29 7 844 25 0 0 0 chr3 33991486 33991511 -125608272 + AT_rich Low_complexity Low_complexity 1 25 0 7 844 21 57 0 0 chr3 33991654 33991689 -125608094 + AT_rich Low_complexity Low_complexity 1 35 0 7 844 665 230 5 89 chr3 33991811 33991885 -125607898 + MTE2b LTR MaLR 1 66 -313 7 844 1934 184 34 29 chr3 33991885 33992300 -125607483 + MTD LTR MaLR 1 417 -2 7 844 665 230 5 89 chr3 33992300 33992416 -125607367 + MTE2b LTR MaLR 67 175 -204 7 844 838 241 21 42 chr3 33992981 33993172 -125606611 - B3 SINE B2 -27 189 3 7 844 1364 138 14 0 chr3 33993331 33993541 -125606242 + URR1A DNA MER1_type 7 219 -7 7 844 388 341 84 0 chr3 33993824 33994003 -125605780 - RMER15-int LTR ERVL -3568 1431 1238 7 844 517 327 105 62 chr3 33994039 33994159 -125605624 - RMER15-int LTR ERVL -4232 767 641 7 844 2081 141 91 0 chr3 33994159 33994520 -125605263 - ORR1B1 LTR MaLR 0 394 1 7 844 517 327 105 62 chr3 33994520 33994980 -125604803 - RMER15-int LTR ERVL -4359 640 162 7 844 332 254 41 8 chr3 33995420 33995543 -125604240 - RMER15-int LTR ERVL -4872 127 1 7 844 2252 217 104 6 chr3 33995543 33996062 -125603721 - RMER15 LTR ERVL 0 575 6 7 844 264 258 0 16 chr3 33996087 33996150 -125603633 - RMER15 LTR ERVL -513 62 1 7 844 285 284 26 39 chr3 33996400 33996477 -125603306 + B4 SINE B4 2 77 -215 7 844 846 155 28 0 chr3 33996480 33996622 -125603161 + B1_Mur2 SINE Alu 1 146 -3 7 844 241 196 43 0 chr3 33996687 33996733 -125603050 + polypurine Low_complexity Low_complexity 1 48 0 7 844 354 295 38 21 chr3 33996733 33996888 -125602895 + B4A SINE B4 81 238 -54 7 844 706 211 15 32 chr3 33997523 33997685 -125602098 - B3 SINE B2 -51 144 2 7 844 496 281 104 0 chr3 33998653 33998788 -125600995 + RSINE1 SINE B4 2 150 -15 7 844 200 111 28 0 chr3 33998801 33998837 -125600946 + (CAAT)n Simple_repeat Simple_repeat 4 40 0 7 844 450 254 312 64 chr3 33998950 33999125 -125600658 + B4A SINE B4 2 220 -72 7 844 2626 88 11 5 chr3 33999125 33999493 -125600290 + L1_Mus4 LINE L1 6262 6631 -5 7 844 302 261 99 33 chr3 33999493 33999519 -125600264 + B4A SINE B4 221 248 -44 7 844 288 0 0 0 chr3 33999671 33999703 -125600080 + (CA)n Simple_repeat Simple_repeat 2 33 0 7 844 369 171 26 26 chr3 33999749 33999827 -125599956 + B3A SINE B2 1 78 -120 7 844 504 0 0 0 chr3 34000035 34000091 -125599692 + (TC)n Simple_repeat Simple_repeat 1 56 0 1 844 771 98 0 0 chr3 34000091 34000213 -125599570 + (CA)n Simple_repeat Simple_repeat 1 123 0 2 844 1224 183 132 25 chr3 34000366 34000691 -125599092 + ORR1D1 LTR MaLR 1 360 -14 3 844 418 217 0 17 chr3 34000947 34001064 -125598719 + CT-rich Low_complexity Low_complexity 2 116 0 4 844 256 242 45 0 chr3 34001266 34001332 -125598451 + L1M4 LINE L1 31 99 -6443 5 844 901 110 40 6 chr3 34001426 34001600 -125598183 + G-rich Low_complexity Low_complexity 1 180 0 6 844 382 86 57 0 chr3 34001607 34001677 -125598106 + (AGGGGG)n Simple_repeat Simple_repeat 4 77 0 7 844 187 170 170 0 chr3 34002001 34002054 -125597729 - MIRb SINE MIR -13 255 194 8 844 180 0 0 0 chr3 34005886 34005906 -125593877 + (A)n Simple_repeat Simple_repeat 1 20 0 9 844 846 280 77 15 chr3 34007889 34008150 -125591633 - B4A SINE B4 -1 291 15 1 844 571 287 119 91 chr3 34008415 34008775 -125591008 + L1MB4 LINE L1 5539 5916 -264 1 844 669 216 58 0 chr3 34008775 34008914 -125590869 + B1F2 SINE Alu 1 147 -2 1 844 571 287 119 91 chr3 34008914 34009124 -125590659 + L1MB4 LINE L1 5917 6125 -55 1 844 210 290 75 0 chr3 34009144 34009237 -125590546 + B2_Mm2 SINE B2 1 100 -95 1 844 25 0 0 0 chr3 34009254 34009279 -125590504 + AT_rich Low_complexity Low_complexity 1 25 0 1 844 802 74 8 16 chr3 34009410 34009534 -125590249 + (TTTC)n Simple_repeat Simple_repeat 4 126 0 1 844 246 62 0 0 chr3 34009534 34009565 -125590218 + (TATG)n Simple_repeat Simple_repeat 1 32 0 1 844 5423 111 70 5 chr3 34009590 34010415 -125589368 - Lx LINE L1 -1 6653 5775 1 844 888 61 0 0 chr3 34010422 34010537 -125589246 + (TTTC)n Simple_repeat Simple_repeat 4 118 0 1 844 213 39 0 0 chr3 34010537 34010563 -125589220 + (TATG)n Simple_repeat Simple_repeat 2 27 0 1 844 585 307 0 18 chr3 34010577 34010743 -125589040 - RSINE1 SINE B4 0 165 3 2 844 531 192 29 0 chr3 34010800 34010904 -125588879 - B1_Mur1 SINE Alu -41 108 2 2 844 379 203 143 8 chr3 34011184 34011303 -125588480 - B1F1 SINE Alu 0 149 15 2 844 236 155 56 0 chr3 34012218 34012289 -125587494 + GA-rich Low_complexity Low_complexity 1 75 0 2 844 2102 141 30 3 chr3 34012374 34012736 -125587047 + ORR1B1 LTR MaLR 11 382 -12 2 844 564 15 0 0 chr3 34013206 34013271 -125586512 + (GA)n Simple_repeat Simple_repeat 1 65 0 2 844 1014 268 25 22 chr3 34013271 34013546 -125586237 + B4 SINE B4 17 292 0 2 844 733 255 75 28 chr3 34013822 34014101 -125585682 + MTEa LTR MaLR 3 300 -79 2 844 21 36 0 0 chr3 34014709 34014737 -125585046 + AT_rich Low_complexity Low_complexity 1 28 0 2 844 281 270 0 0 chr3 34015343 34015417 -125584366 - 5S rRNA rRNA -32 89 16 2 844 249 108 0 0 chr3 34015461 34015498 -125584285 + (TTTA)n Simple_repeat Simple_repeat 4 40 0 3 844 415 265 154 33 chr3 34015582 34015855 -125583928 + MER33 DNA MER1_type 18 323 -1 3 844 462 257 0 0 chr3 34016016 34016117 -125583666 + B1_Mur1 SINE Alu 36 136 -13 3 844 1852 164 88 3 chr3 34016178 34016551 -125583232 - MTD LTR MaLR -14 405 1 3 844 810 133 0 29 chr3 34016686 34016825 -125582958 - URR1B DNA MER1_type 0 225 91 3 844 427 222 173 67 chr3 34016687 34016895 -125582888 + CYRA11_Mm Unknown Y-chromosome 172 401 -216 3 844 600 226 98 2 chr3 34019163 34019328 -125580455 + B3A SINE B2 5 182 -34 3 844 769 160 84 0 chr3 34019353 34019484 -125580299 - B1_Mur4 SINE Alu -8 142 1 3 844 2746 147 127 19 chr3 34019545 34020064 -125579719 + RMER15 LTR ERVL 1 575 0 3 844 492 290 153 0 chr3 34020137 34020313 -125579470 - ID_B1 SINE B4 -18 206 4 3 844 253 274 48 19 chr3 34020443 34020547 -125579236 - RSINE1 SINE B4 -56 109 3 4 844 867 82 7 15 chr3 34020792 34020929 -125578854 + L1Md_F2 LINE L1 6445 6580 -2 4 844 7823 29 0 1 chr3 34022091 34022989 -125576794 - L1Md_T LINE L1 -1 6581 5685 4 844 2278 27 0 0 chr3 34022988 34023250 -125576533 + L1_Mm LINE L1 4471 4732 -1151 4 844 525 273 148 47 chr3 34023247 34023712 -125576071 - L1MA6 LINE L1 -120 6180 5669 4 844 487 253 84 91 chr3 34023747 34023842 -125575941 - ORR1D1 LTR MaLR -102 272 174 4 844 459 35 0 0 chr3 34023842 34023899 -125575884 + (GGGAGA)n Simple_repeat Simple_repeat 6 62 0 4 844 487 253 84 91 chr3 34023899 34024077 -125575706 - ORR1D1 LTR MaLR -201 173 2 4 844 1695 291 79 37 chr3 34024090 34024987 -125574796 - L1MA6 LINE L1 -1438 4705 3771 4 844 313 353 47 12 chr3 34024994 34025166 -125574617 + MER2 DNA MER2_type 168 345 0 4 844 598 300 29 0 chr3 34025281 34025451 -125574332 - B3 SINE B2 -15 201 27 4 844 277 280 32 0 chr3 34025451 34025544 -125574239 - L1MA6 LINE L1 -2369 3771 3676 4 844 189 178 0 0 chr3 34026108 34026153 -125573630 + (TCTG)n Simple_repeat Simple_repeat 2 46 0 4 844 2009 261 13 24 chr3 34026159 34026791 -125572992 - Lx6 LINE L1 -33 7427 6460 5 844 591 53 0 0 chr3 34026791 34026866 -125572917 + (TCCC)n Simple_repeat Simple_repeat 4 78 0 5 844 1201 250 19 0 chr3 34026866 34026982 -125572801 - Lx6 LINE L1 -712 6748 6630 5 844 261 83 0 0 chr3 34027290 34027326 -125572457 + (TG)n Simple_repeat Simple_repeat 1 36 0 5 844 536 0 16 0 chr3 34027326 34027389 -125572394 + (GA)n Simple_repeat Simple_repeat 1 65 0 5 844 320 270 0 13 chr3 34027427 34027502 -125572281 - B4 SINE B4 -4 288 215 5 844 203 81 0 51 chr3 34027508 34027547 -125572236 + (TTTTC)n Simple_repeat Simple_repeat 2 38 0 5 844 346 237 0 0 chr3 34027552 34027628 -125572155 - B4 SINE B4 -73 219 144 5 844 595 269 97 21 chr3 34027701 34027887 -125571896 + MTD LTR MaLR 1 200 -219 5 844 2073 237 29 11 chr3 34027981 34028429 -125571354 - Lx9 LINE L1 -848 6796 6341 5 844 807 88 0 0 chr3 34028429 34028542 -125571241 + (TATG)n Simple_repeat Simple_repeat 1 113 0 5 844 679 371 36 40 chr3 34028542 34028661 -125571122 - Lx8 LINE L1 -1275 6198 6088 5 844 1394 70 11 11 chr3 34031989 34032176 -125567607 + B2_Mm2 SINE B2 2 188 -7 6 844 399 113 0 0 chr3 34032546 34032608 -125567175 + (CA)n Simple_repeat Simple_repeat 2 63 0 6 844 274 274 14 0 chr3 34032629 34032702 -125567081 + ID4_ SINE ID 1 74 -9 6 844 1158 62 17 0 chr3 34032786 34032963 -125566820 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 6 844 304 194 12 3 chr3 34033313 34033400 -125566383 + L1MA5 LINE L1 6208 6300 0 6 844 22 0 0 0 chr3 34033672 34033694 -125566089 + AT_rich Low_complexity Low_complexity 1 22 0 6 844 288 291 126 63 chr3 34033785 34034127 -125565656 - L1M3 LINE L1 -1905 4235 3854 6 844 23 0 0 0 chr3 34034569 34034592 -125565191 + AT_rich Low_complexity Low_complexity 1 23 0 6 844 565 203 17 17 chr3 34034640 34034760 -125565023 - RSINE1 SINE B4 -42 123 4 6 844 338 321 211 26 chr3 34034772 34034785 -125564998 - L1MEe LINE L1 -1472 4674 4662 6 844 426 259 36 0 chr3 34034785 34034897 -125564886 - PB1D10 SINE Alu -1 116 1 7 844 338 321 211 26 chr3 34034897 34035184 -125564599 - L1MEe LINE L1 -1485 4661 4341 6 844 401 0 20 0 chr3 34035184 34035233 -125564550 + (TA)n Simple_repeat Simple_repeat 2 51 0 7 844 338 321 211 26 chr3 34035233 34035391 -125564392 - L1MEe LINE L1 -1806 4340 4132 6 844 456 283 32 58 chr3 34035629 34035783 -125564000 - RSINE1 SINE B4 -14 151 2 7 844 234 230 65 54 chr3 34035790 34035882 -125563901 - L1MEe LINE L1 -3725 2441 2349 6 844 1826 165 64 17 chr3 34036405 34036762 -125563021 + ORR1D1 LTR MaLR 1 374 0 7 844 21 57 0 0 chr3 34037556 34037591 -125562192 + AT_rich Low_complexity Low_complexity 1 35 0 7 844 185 271 17 17 chr3 34038209 34038269 -125561514 + MER5B DNA MER1_type 72 131 -47 7 844 454 252 122 0 chr3 34038301 34038432 -125561351 - RSINE1 SINE B4 -17 148 2 7 844 573 279 50 125 chr3 34038609 34038888 -125560895 - B4A SINE B4 -34 258 1 7 844 238 214 99 22 chr3 34039216 34039307 -125560476 - Lx9 LINE L1 -6 7638 7541 7 844 257 270 135 0 chr3 34039333 34039444 -125560339 + PB1 SINE Alu 1 126 -1 7 844 234 135 0 75 chr3 34039569 34039609 -125560174 + L1M2a1 LINE L1 13 49 -7067 8 844 306 194 0 0 chr3 34039788 34039855 -125559928 + T-rich Low_complexity Low_complexity 1 67 0 8 844 724 253 0 0 chr3 34039856 34040002 -125559781 - B1_Mur2 SINE Alu -2 147 2 8 844 411 385 5 0 chr3 34040002 34040197 -125559586 - L1MA5 LINE L1 -45 6255 6060 8 844 1712 304 90 25 chr3 34040194 34041019 -125558764 - Lx9 LINE L1 -217 7427 6550 7 844 980 302 22 17 chr3 34041020 34041377 -125558406 - L1MA5 LINE L1 -326 5974 5616 8 844 1601 220 11 41 chr3 34041476 34041845 -125557938 + ORR1D1 LTR MaLR 17 374 0 8 844 285 262 83 53 chr3 34041845 34041937 -125557846 - MLT1A1 LTR MaLR -303 105 10 8 844 666 242 56 6 chr3 34042931 34043093 -125556690 - ID_B1 SINE B4 -37 187 18 8 844 525 270 92 54 chr3 34043242 34043408 -125556375 + B3A SINE B2 8 181 -17 8 844 369 0 0 0 chr3 34043408 34043449 -125556334 + (CA)n Simple_repeat Simple_repeat 1 41 0 8 844 525 270 92 54 chr3 34043449 34043466 -125556317 + B3A SINE B2 182 197 -1 8 844 961 287 39 45 chr3 34043475 34043807 -125555976 - MTE2a LTR MaLR -43 336 7 9 844 288 0 0 0 chr3 34044262 34044294 -125555489 + (TG)n Simple_repeat Simple_repeat 1 32 0 9 844 563 253 0 120 chr3 34044295 34044374 -125555409 - RSINE1 SINE B4 -1 164 98 9 844 3808 138 65 14 chr3 34044374 34045007 -125554776 - Lx LINE L1 0 6654 5990 9 844 563 253 0 120 chr3 34045007 34045102 -125554681 - RSINE1 SINE B4 -68 97 11 9 844 264 59 0 0 chr3 34045108 34045142 -125554641 + (TTTTC)n Simple_repeat Simple_repeat 2 35 0 9 844 200 111 22 0 chr3 34045716 34045761 -125554022 + (TTTTTG)n Simple_repeat Simple_repeat 2 47 0 9 844 441 0 0 0 chr3 34046213 34046262 -125553521 + (CA)n Simple_repeat Simple_repeat 2 50 0 9 844 2376 147 44 0 chr3 34046278 34046687 -125553096 - RLTR20B1 LTR ERVK -136 427 1 9 844 2309 132 18 10 chr3 34047044 34047433 -125552350 + MTC LTR MaLR 1 392 -29 9 844 23 54 0 0 chr3 34048251 34048288 -125551495 + AT_rich Low_complexity Low_complexity 1 37 0 9 844 216 183 0 47 chr3 34048869 34048955 -125550828 + G-rich Low_complexity Low_complexity 2 83 0 1 844 336 24 0 0 chr3 34049348 34049389 -125550394 + (CA)n Simple_repeat Simple_repeat 1 41 0 1 844 251 254 237 37 chr3 34052029 34052164 -125547619 + MLT1A0 LTR MaLR 144 305 -60 1 844 1380 233 159 13 chr3 34052795 34053266 -125546517 + Lx6 LINE L1 6520 7433 -27 1 844 309 26 0 0 chr3 34053276 34053314 -125546469 + (GA)n Simple_repeat Simple_repeat 2 39 0 1 844 701 150 6 145 chr3 34053320 34053492 -125546291 + B1_Mus1 SINE Alu 1 148 0 1 844 21 71 0 0 chr3 34053499 34053541 -125546242 + AT_rich Low_complexity Low_complexity 1 42 0 1 844 518 266 41 82 chr3 34053715 34053983 -125545800 - B4 SINE B4 -6 286 53 1 844 476 279 112 0 chr3 34054095 34054256 -125545527 - B4A SINE B4 -65 227 49 1 844 183 42 0 0 chr3 34055357 34055381 -125544402 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1 844 1149 51 0 0 chr3 34055381 34055519 -125544264 - B1_Mus1 SINE Alu -10 138 1 1 844 29 0 0 0 chr3 34055519 34055548 -125544235 + AT_rich Low_complexity Low_complexity 1 29 0 1 844 724 117 7 7 chr3 34055742 34055888 -125543895 + (TC)n Simple_repeat Simple_repeat 1 146 0 1 844 339 25 0 0 chr3 34055888 34055928 -125543855 + (TG)n Simple_repeat Simple_repeat 1 40 0 1 844 249 154 0 0 chr3 34055932 34055971 -125543812 - RMER15 LTR ERVL -113 462 424 1 844 1331 293 54 26 chr3 34055971 34056472 -125543311 - Lx8 LINE L1 -213 7260 6746 1 844 689 321 66 35 chr3 34056588 34056936 -125542847 - Lx8 LINE L1 -1077 6396 6038 1 844 2292 191 46 6 chr3 34057009 34057489 -125542294 - RMER20A LTR ERVK -7 509 11 1 844 1363 209 113 14 chr3 34057610 34057974 -125541809 + MTD LTR MaLR 18 417 -2 1 844 1484 286 112 55 chr3 34057980 34058661 -125541122 - Lx8 LINE L1 -229 5651 4958 1 844 1444 65 16 5 chr3 34058661 34058847 -125540936 - B2_Mm2 SINE B2 -4 191 4 1 844 1484 286 112 55 chr3 34058847 34059354 -125540429 - Lx8 LINE L1 -923 4957 4395 1 844 2052 283 134 43 chr3 34059388 34059963 -125539820 - Lx8 LINE L1 -5 7468 6805 1 844 1286 158 13 22 chr3 34059963 34060190 -125539593 + URR1B DNA MER1_type 1 225 0 1 844 2052 283 134 43 chr3 34060190 34060484 -125539299 - Lx8 LINE L1 -669 6804 6521 1 844 426 20 0 0 chr3 34060484 34060535 -125539248 + (CA)n Simple_repeat Simple_repeat 2 52 0 1 844 2052 283 134 43 chr3 34060535 34060602 -125539181 - Lx8 LINE L1 -953 6520 6446 1 844 1819 48 13 4 chr3 34060648 34060877 -125538906 + L1Md_F2 LINE L1 6347 6577 -5 1 844 540 289 60 39 chr3 34060896 34061227 -125538556 - Lx8 LINE L1 -1650 4230 3893 1 844 604 323 52 4 chr3 34061415 34061667 -125538116 - L1MCb LINE L1 -5300 745 482 1 844 224 213 16 0 chr3 34062092 34062153 -125537630 + (CATATA)n Simple_repeat Simple_repeat 1 62 0 1 844 662 178 6 0 chr3 34062513 34062676 -125537107 + (TAGGG)n Simple_repeat Simple_repeat 1 164 0 1 844 220 344 0 0 chr3 34064250 34064350 -125535433 - MIRc SINE MIR -49 159 60 1 844 1392 208 56 69 chr3 34065106 34065483 -125534300 - ORR1D1 LTR MaLR 0 374 3 1 844 2130 270 33 20 chr3 34065626 34066167 -125533616 + Lx5 LINE L1 6498 7045 -5 1 844 198 171 0 0 chr3 34066177 34066218 -125533565 + (TA)n Simple_repeat Simple_repeat 2 42 0 1 844 3670 121 18 16 chr3 34067013 34067633 -125532150 - RMER6A LTR ERVK -6 750 130 1 844 236 178 22 0 chr3 34067644 34067689 -125532094 - RMER6A LTR ERVK -415 46 1 1 844 1504 235 81 18 chr3 34068040 34068372 -125531411 + MTD LTR MaLR 1 352 -67 1 844 212 0 36 0 chr3 34068372 34068400 -125531383 + (CAA)n Simple_repeat Simple_repeat 2 30 0 1 844 1504 235 81 18 chr3 34068400 34068461 -125531322 + MTD LTR MaLR 353 419 0 1 844 4145 229 60 49 chr3 34068465 34069702 -125530081 + MTD-int LTR MaLR 8 1257 -1 1 844 470 168 73 18 chr3 34069734 34069843 -125529940 + MTD LTR MaLR 307 421 0 1 844 889 309 58 18 chr3 34070832 34071158 -125528625 - ORR1E LTR MaLR -12 347 9 1 844 519 17 0 0 chr3 34072071 34072131 -125527652 + (TG)n Simple_repeat Simple_repeat 2 61 0 1 844 426 39 0 0 chr3 34073386 34073438 -125526345 + (CA)n Simple_repeat Simple_repeat 1 52 0 1 844 238 265 86 121 chr3 34073517 34073547 -125526236 + PB1 SINE Alu 14 39 -88 1 844 1069 147 136 0 chr3 34073547 34073745 -125526038 + URR1A DNA MER1_type 1 225 -1 1 844 254 265 85 119 chr3 34073745 34073831 -125525952 + PB1D10 SINE Alu 40 125 -2 1 844 280 235 0 14 chr3 34073842 34073911 -125525872 + ID4 SINE ID 3 70 -13 1 844 414 0 0 0 chr3 34074045 34074091 -125525692 + (TG)n Simple_repeat Simple_repeat 2 47 0 1 844 376 279 150 60 chr3 34074602 34074983 -125524800 + MLT1D LTR MaLR 54 452 -53 1 844 215 117 71 41 chr3 34075285 34075383 -125524400 + A-rich Low_complexity Low_complexity 1 101 0 1 844 369 0 0 0 chr3 34075385 34075426 -125524357 + (CA)n Simple_repeat Simple_repeat 1 41 0 1 844 494 210 20 10 chr3 34075427 34075528 -125524255 - Lx7 LINE L1 -384 7312 7211 1 844 533 102 20 0 chr3 34075755 34075853 -125523930 + (TCTCTG)n Simple_repeat Simple_repeat 1 100 0 1 844 1000 205 109 11 chr3 34075853 34076119 -125523664 - B4 SINE B4 0 292 1 1 844 272 373 54 18 chr3 34076310 34076534 -125523249 - MLT1A0 LTR MaLR -86 279 48 1 844 3119 203 63 33 chr3 34076564 34077662 -125522121 - L1_Mur3 LINE L1 -3892 1988 843 1 844 753 41 0 0 chr3 34078059 34078156 -125521627 + (GA)n Simple_repeat Simple_repeat 2 98 0 1 844 1681 216 55 42 chr3 34078202 34078603 -125521180 - MTC LTR MaLR 0 421 16 1 105 564 198 9 0 chr3 34078605 34078721 -125521062 - ORR1D1 LTR MaLR -257 117 1 1 845 993 251 58 90 chr3 34079058 34079434 -125520349 - MTE2b LTR MaLR 0 379 16 1 845 252 362 11 0 chr3 34079485 34079579 -125520204 - L1M3d LINE L1 -5387 504 410 1 845 435 257 234 22 chr3 34080314 34080545 -125519238 - B4A SINE B4 -12 280 1 1 845 998 190 30 73 chr3 34080851 34081084 -125518699 + URR1A DNA MER1_type 1 223 -3 1 845 8688 30 0 0 chr3 34081106 34082102 -125517681 + L1Md_T LINE L1 5587 6582 0 1 845 321 169 0 0 chr3 34083054 34083113 -125516670 + GA-rich Low_complexity Low_complexity 2 60 0 1 845 396 200 0 0 chr3 34083861 34083946 -125515837 + T-rich Low_complexity Low_complexity 1 85 0 1 845 324 0 0 0 chr3 34084030 34084066 -125515717 + (CA)n Simple_repeat Simple_repeat 2 37 0 1 845 184 200 34 68 chr3 34084848 34084907 -125514876 - L2a LINE L2 -95 3331 3275 1 845 246 62 0 0 chr3 34085654 34085686 -125514097 + (TATAA)n Simple_repeat Simple_repeat 4 35 0 1 845 223 122 0 39 chr3 34085782 34085833 -125513950 + CT-rich Low_complexity Low_complexity 2 50 0 1 845 246 271 0 17 chr3 34085852 34085912 -125513871 - ID4 SINE ID -23 60 2 1 845 696 257 5 27 chr3 34086367 34086555 -125513228 + B4 SINE B4 36 219 -73 1 845 532 299 7 14 chr3 34086667 34086813 -125512970 + RSINE1 SINE B4 1 145 -20 1 845 441 0 0 0 chr3 34086814 34086863 -125512920 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 845 11602 23 8 0 chr3 34087764 34089750 -125510033 - L1Md_T LINE L1 0 6582 4575 1 845 213 227 154 39 chr3 34089910 34089988 -125509795 + ID_B1 SINE B4 80 166 -58 1 845 510 284 51 67 chr3 34090388 34090655 -125509128 - L1MB3 LINE L1 -7 6176 5915 1 845 1143 266 10 30 chr3 34090655 34090953 -125508830 - B4A SINE B4 0 292 1 1 845 510 284 51 67 chr3 34090953 34090998 -125508785 - L1MB3 LINE L1 -269 5914 5869 1 845 380 282 50 66 chr3 34091582 34091666 -125508117 - L1M2 LINE L1 -629 5671 5585 1 845 860 200 177 0 chr3 34091666 34091841 -125507942 - B3 SINE B2 -10 206 1 1 845 380 282 50 66 chr3 34091841 34092014 -125507769 - L1M2 LINE L1 -716 5584 5419 1 845 592 298 0 0 chr3 34092036 34092187 -125507596 - RSINE1 SINE B4 -10 155 5 1 845 366 273 103 5 chr3 34092228 34092423 -125507360 - L1M2 LINE L1 -758 5385 5172 1 845 1311 72 0 0 chr3 34092457 34092637 -125507146 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 1 845 216 97 0 0 chr3 34092637 34092668 -125507115 + (TC)n Simple_repeat Simple_repeat 1 31 0 1 845 1049 126 6 0 chr3 34092668 34092843 -125506940 + (TTTC)n Simple_repeat Simple_repeat 3 178 0 1 845 478 263 10 0 chr3 34092845 34092944 -125506839 - PB1D9 SINE Alu -15 105 6 1 845 280 319 97 0 chr3 34092967 34092981 -125506802 - ID_B1 SINE B4 -6 218 95 1 845 335 283 71 0 chr3 34092981 34093080 -125506703 - B1F SINE Alu -30 119 14 1 845 1422 224 88 44 chr3 34093205 34093593 -125506190 + MTD LTR MaLR 1 405 -14 1 845 270 310 26 17 chr3 34093632 34093747 -125506036 - L1M5 LINE L1 -438 5686 5571 1 845 342 0 0 0 chr3 34096588 34096626 -125503157 + (GA)n Simple_repeat Simple_repeat 2 39 0 1 845 671 244 176 120 chr3 34099252 34099611 -125500172 - MTE2b LTR MaLR 0 379 1 1 845 663 229 106 35 chr3 34101367 34101566 -125498217 - B3 SINE B2 -1 215 3 1 845 679 217 118 17 chr3 34101586 34101764 -125498019 - ID_B1 SINE B4 0 224 29 1 845 194 0 39 0 chr3 34101810 34101836 -125497947 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 845 215 337 0 20 chr3 34102762 34102862 -125496921 + C-rich Low_complexity Low_complexity 1 98 0 1 845 629 270 291 9 chr3 34102927 34103285 -125496498 - L1MA5A LINE L1 -203 5965 5508 1 845 344 230 69 20 chr3 34103297 34103399 -125496384 - RLTR23 LTR ERV1 0 430 324 1 845 917 292 59 8 chr3 34103829 34104205 -125495578 - L1_Mur3 LINE L1 -914 5530 5095 1 845 213 132 0 0 chr3 34104351 34104389 -125495394 + (TG)n Simple_repeat Simple_repeat 2 39 0 1 845 230 306 38 67 chr3 34104442 34104547 -125495236 - MER88 LTR ERVL -247 217 116 1 845 25 0 0 0 chr3 34104966 34104991 -125494792 + AT_rich Low_complexity Low_complexity 1 25 0 1 845 263 326 31 94 chr3 34104999 34105133 -125494650 - RSINE1 SINE B4 -16 149 23 1 845 1270 187 4 9 chr3 34105133 34105360 -125494423 - URR1A DNA MER1_type 0 226 1 1 845 263 326 31 94 chr3 34105360 34105384 -125494399 - RSINE1 SINE B4 -143 22 1 1 845 21 36 0 0 chr3 34105391 34105419 -125494364 + AT_rich Low_complexity Low_complexity 1 28 0 1 845 501 282 45 11 chr3 34105438 34105614 -125494169 - B3A SINE B2 -15 183 2 1 845 579 81 30 0 chr3 34106708 34106807 -125492976 + (TAGA)n Simple_repeat Simple_repeat 3 104 0 1 845 216 0 0 0 chr3 34107087 34107111 -125492672 + (TG)n Simple_repeat Simple_repeat 2 25 0 1 845 197 33 0 32 chr3 34107242 34107273 -125492510 + (GAAAA)n Simple_repeat Simple_repeat 4 33 0 1 845 208 242 8 8 chr3 34107737 34107870 -125491913 + (TG)n Simple_repeat Simple_repeat 2 134 0 2 845 272 349 87 7 chr3 34107895 34108045 -125491738 - RSINE1 SINE B4 -1 164 3 2 845 480 89 0 0 chr3 34108695 34108774 -125491009 + (CA)n Simple_repeat Simple_repeat 2 80 0 2 845 2489 71 9 6 chr3 34109040 34109366 -125490417 - ORR1A2 LTR MaLR 0 327 1 2 845 550 211 12 87 chr3 34109625 34109643 -125490140 - MTE2a LTR MaLR -23 356 346 2 845 223 28 56 0 chr3 34109643 34109679 -125490104 + (CAA)n Simple_repeat Simple_repeat 2 39 0 2 845 550 211 12 87 chr3 34109679 34109821 -125489962 - MTE2a LTR MaLR -34 345 208 2 845 772 284 59 59 chr3 34109867 34110116 -125489667 + B4A SINE B4 2 259 -33 2 845 1940 164 76 6 chr3 34110116 34110472 -125489311 - ORR1C2 LTR MaLR 0 384 4 2 845 772 284 59 59 chr3 34110472 34110495 -125489288 + B4A SINE B4 260 274 -18 2 845 25 0 0 0 chr3 34110572 34110597 -125489186 + AT_rich Low_complexity Low_complexity 1 25 0 2 845 249 108 0 0 chr3 34112046 34112083 -125487700 + (TG)n Simple_repeat Simple_repeat 2 38 0 2 845 666 298 79 9 chr3 34112098 34112325 -125487458 - B4A SINE B4 -49 243 1 2 845 1802 112 101 40 chr3 34112412 34112738 -125487045 - ORR1B1 LTR MaLR -8 386 41 2 845 30 45 0 0 chr3 34112848 34112892 -125486891 + AT_rich Low_complexity Low_complexity 1 44 0 2 845 237 33 0 0 chr3 34113531 34113561 -125486222 + (TG)n Simple_repeat Simple_repeat 2 31 0 2 845 1016 248 31 12 chr3 34113687 34113944 -125485839 - B4A SINE B4 -10 282 21 2 845 486 0 0 0 chr3 34115068 34115122 -125484661 + (TG)n Simple_repeat Simple_repeat 1 54 0 2 845 807 83 0 0 chr3 34117457 34117578 -125482205 + (TC)n Simple_repeat Simple_repeat 2 122 0 2 845 428 319 76 42 chr3 34120692 34120928 -125478855 + Tigger7 DNA MER2_type 7 250 -2241 2 845 1827 206 108 42 chr3 34121268 34121350 -125478433 - RLTR20C LTR ERVK 0 534 434 2 845 414 0 0 0 chr3 34121350 34121396 -125478387 + (CA)n Simple_repeat Simple_repeat 2 47 0 2 845 1827 206 108 42 chr3 34121396 34121814 -125477969 - RLTR20C LTR ERVK -101 433 2 2 845 188 384 12 0 chr3 34121922 34122008 -125477775 - MIRb SINE MIR -99 169 83 2 845 825 174 7 0 chr3 34122055 34122193 -125477590 - B1_Mur4 SINE Alu -9 141 3 2 845 401 183 0 119 chr3 34122091 34122209 -125477574 - MT2B LTR ERVL -344 257 154 2 845 1187 268 49 29 chr3 34122334 34122564 -125477219 + ORR1E LTR MaLR 4 233 -126 2 845 354 45 0 0 chr3 34122564 34122608 -125477175 + (CATGT)n Simple_repeat Simple_repeat 1 44 0 2 845 1187 268 49 29 chr3 34122608 34122726 -125477057 + ORR1E LTR MaLR 234 359 0 2 845 3163 282 83 42 chr3 34122728 34123055 -125476728 + ORR1E-int LTR MaLR 1 335 -1035 2 845 1440 43 11 0 chr3 34123055 34123241 -125476542 - L1Md_F3 LINE L1 0 6584 6397 2 845 3163 282 83 42 chr3 34123241 34124203 -125475580 + ORR1E-int LTR MaLR 336 1342 -28 2 845 446 252 9 9 chr3 34124213 34124329 -125475454 + ORR1E LTR MaLR 1 116 -243 2 845 232 283 17 0 chr3 34124974 34125034 -125474749 + ID4 SINE ID 21 81 -2 2 845 23 33 0 0 chr3 34125344 34125374 -125474409 + AT_rich Low_complexity Low_complexity 1 30 0 2 845 272 177 20 30 chr3 34125401 34125500 -125474283 + GA-rich Low_complexity Low_complexity 5 102 0 2 845 402 253 26 186 chr3 34125503 34125697 -125474086 - B3 SINE B2 -53 163 1 2 845 1147 184 9 14 chr3 34126125 34126340 -125473443 - B3 SINE B2 -2 214 1 2 845 24 0 0 0 chr3 34127212 34127236 -125472547 + AT_rich Low_complexity Low_complexity 1 24 0 2 845 406 320 91 83 chr3 34128422 34128664 -125471119 - MLT1A LTR MaLR -19 355 112 2 845 3453 165 114 77 chr3 34129321 34130179 -125469604 - RMER19B LTR ERVK -12 890 1 2 845 222 209 0 0 chr3 34130875 34130918 -125468865 + (ATG)n Simple_repeat Simple_repeat 2 44 0 2 845 24 0 0 0 chr3 34132078 34132102 -125467681 + AT_rich Low_complexity Low_complexity 1 24 0 2 845 671 271 2 47 chr3 34132626 34132822 -125466961 + B3A SINE B2 16 202 -14 2 845 24 0 0 0 chr3 34132846 34132870 -125466913 + AT_rich Low_complexity Low_complexity 1 24 0 2 845 728 259 16 104 chr3 34133871 34134121 -125465662 - B4 SINE B4 -24 268 41 2 845 255 319 123 33 chr3 34135519 34135730 -125464053 + Lx8 LINE L1 6047 6276 -1197 2 845 1237 34 7 0 chr3 34135731 34135877 -125463906 + B1_Mm SINE Alu 1 147 0 2 845 581 307 20 0 chr3 34135909 34136062 -125463721 - B4 SINE B4 -76 216 61 2 845 798 331 57 0 chr3 34136128 34136442 -125463341 + Lx8 LINE L1 6487 6818 -655 2 845 1825 253 78 7 chr3 34136436 34136886 -125462897 - Lx6 LINE L1 -155 7305 6824 2 845 1451 331 52 16 chr3 34136884 34137496 -125462287 + Lx8 LINE L1 6840 7473 0 2 845 368 310 9 0 chr3 34137576 34137689 -125462094 + Lx8 LINE L1 6751 6864 -609 2 845 719 260 106 67 chr3 34137698 34137982 -125461801 + Lx8 LINE L1 7080 7374 -99 2 845 28 0 0 0 chr3 34138053 34138081 -125461702 + AT_rich Low_complexity Low_complexity 1 28 0 2 845 204 40 0 0 chr3 34138740 34138765 -125461018 + (CAA)n Simple_repeat Simple_repeat 3 27 0 2 845 782 176 0 11 chr3 34139701 34139879 -125459904 + CT-rich Low_complexity Low_complexity 3 178 0 2 845 254 29 0 0 chr3 34141674 34141708 -125458075 - URR1B DNA MER1_type -2 223 190 2 845 189 0 0 0 chr3 34142241 34142262 -125457521 + (CAAAAA)n Simple_repeat Simple_repeat 2 22 0 2 845 236 310 125 14 chr3 34142699 34142771 -125457012 + PB1D10 SINE Alu 7 86 -31 2 845 329 356 53 35 chr3 34143236 34143405 -125456378 - ORR1E LTR MaLR -167 192 21 2 845 365 300 95 54 chr3 34143439 34143587 -125456196 + Lx8 LINE L1 7017 7170 -303 2 845 561 277 66 58 chr3 34143982 34144386 -125455397 + MLT1C LTR MaLR 2 390 0 2 845 195 340 21 11 chr3 34144522 34144617 -125455166 + MIRc SINE MIR 47 142 -126 2 845 565 302 90 37 chr3 34144626 34145096 -125454687 + MLT2B2 LTR ERVL 19 509 -6 2 845 333 0 0 0 chr3 34145523 34145560 -125454223 + (CA)n Simple_repeat Simple_repeat 2 38 0 2 845 536 258 52 15 chr3 34146544 34146678 -125453105 + RSINE1 SINE B4 11 149 -16 2 845 387 233 12 0 chr3 34148804 34148890 -125450893 + ID_B1 SINE B4 134 220 -4 2 845 285 213 53 13 chr3 34149382 34149458 -125450325 - ID4_ SINE ID -4 79 1 2 845 273 82 66 0 chr3 34149631 34149692 -125450091 + (TTAA)n Simple_repeat Simple_repeat 4 68 0 2 845 479 90 0 13 chr3 34149727 34149806 -125449977 - Lx2A LINE L1 -3 7005 6928 2 845 404 215 131 51 chr3 34150399 34150536 -125449247 - B1F SINE Alu 0 149 2 2 845 458 221 0 8 chr3 34150559 34150691 -125449092 + (TA)n Simple_repeat Simple_repeat 2 132 0 2 845 239 295 17 35 chr3 34151269 34151385 -125448398 + MER20 DNA MER1_type 47 160 -59 2 845 261 0 0 0 chr3 34152710 34152739 -125447044 + (TTCA)n Simple_repeat Simple_repeat 3 31 0 2 845 1130 157 68 41 chr3 34153178 34153397 -125446386 - URR1B DNA MER1_type 0 225 1 2 845 252 311 14 0 chr3 34153442 34153516 -125446267 + G-rich Low_complexity Low_complexity 5 79 0 2 845 234 0 0 0 chr3 34154643 34154669 -125445114 + (CA)n Simple_repeat Simple_repeat 2 27 0 2 845 2717 28 3 0 chr3 34155019 34155338 -125444445 + L1Md_F3 LINE L1 6265 6584 0 2 845 260 266 43 55 chr3 34155544 34155655 -125444128 - B1F1 SINE Alu 0 120 7 2 845 298 309 71 0 chr3 34156305 34156431 -125443352 - MIRb SINE MIR -10 258 124 2 845 204 122 0 0 chr3 34156898 34156939 -125442844 + (T)n Simple_repeat Simple_repeat 1 41 0 2 845 667 290 127 25 chr3 34156974 34157296 -125442487 - ORR1E LTR MaLR -4 355 1 2 845 535 292 7 0 chr3 34157921 34158065 -125441718 + B1F SINE Alu 5 149 0 2 845 393 58 0 0 chr3 34158377 34158429 -125441354 + (TTTA)n Simple_repeat Simple_repeat 2 53 0 2 845 1065 197 71 17 chr3 34158430 34158668 -125441115 - Lx5 LINE L1 0 7050 6800 2 845 244 286 80 35 chr3 34160094 34160232 -125439551 - MIRb SINE MIR -101 161 26 2 845 470 175 140 140 chr3 34160346 34160502 -125439281 + B3A SINE B2 3 168 -30 2 845 411 38 0 0 chr3 34160502 34160555 -125439228 + (CA)n Simple_repeat Simple_repeat 1 53 0 2 845 255 175 140 140 chr3 34160555 34160584 -125439199 + B2_Mm2 SINE B2 163 188 -7 2 845 187 276 85 75 chr3 34160648 34160742 -125439041 - L2c LINE L2 -15 3372 3278 2 845 198 0 0 0 chr3 34161838 34161860 -125437923 + (T)n Simple_repeat Simple_repeat 1 22 0 2 845 540 205 54 0 chr3 34161871 34161983 -125437800 + B3A SINE B2 2 119 -79 2 845 200 111 0 27 chr3 34161983 34162020 -125437763 + (GGGTG)n Simple_repeat Simple_repeat 4 39 0 2 845 260 314 0 0 chr3 34162020 34162090 -125437693 + B3 SINE B2 114 183 -33 2 845 1099 37 41 0 chr3 34162106 34162377 -125437406 + (TAGA)n Simple_repeat Simple_repeat 1 282 0 2 845 597 261 159 0 chr3 34162388 34162564 -125437219 + B4 SINE B4 84 287 -5 2 845 459 0 0 0 chr3 34162567 34162618 -125437165 + (CA)n Simple_repeat Simple_repeat 1 51 0 2 845 307 360 0 20 chr3 34163506 34163608 -125436175 + B1F2 SINE Alu 1 100 -49 2 845 329 271 0 0 chr3 34164748 34164833 -125434950 + (TG)n Simple_repeat Simple_repeat 2 86 0 2 845 524 213 150 41 chr3 34164836 34164983 -125434800 - RSINE1 SINE B4 0 165 3 2 845 477 0 0 0 chr3 34166635 34166688 -125433095 + (TG)n Simple_repeat Simple_repeat 1 53 0 2 845 441 343 0 68 chr3 34168175 34168366 -125431417 + MER63A DNA AcHobo 32 209 -1 2 845 261 296 29 48 chr3 34169755 34169858 -125429925 + MTEb LTR MaLR 278 378 -1 2 845 423 0 0 0 chr3 34169923 34169970 -125429813 + (CA)n Simple_repeat Simple_repeat 2 48 0 2 845 504 144 10 30 chr3 34170014 34170114 -125429669 + B3A SINE B2 3 100 -98 2 845 286 301 55 56 chr3 34170221 34170434 -125429349 + L1M3 LINE L1 5479 5674 -497 2 845 443 18 18 0 chr3 34170710 34170766 -125429017 + (TC)n Simple_repeat Simple_repeat 2 58 0 2 845 427 112 64 0 chr3 34170766 34170891 -125428892 + (TA)n Simple_repeat Simple_repeat 1 133 0 2 845 920 269 98 4 chr3 34170906 34171171 -125428612 + B4A SINE B4 1 290 -2 2 845 1103 211 61 101 chr3 34171332 34171759 -125428024 + RMER17C LTR ERVK 1 410 0 2 845 317 381 30 30 chr3 34171917 34172120 -125427663 + Charlie1 DNA MER1_type 1819 2021 -760 2 845 330 284 137 0 chr3 34172153 34172350 -125427433 + Charlie1 DNA MER1_type 2517 2740 -41 2 845 1579 290 51 20 chr3 34172351 34172900 -125426883 - Lx9 LINE L1 -237 7407 6842 3 845 425 292 27 14 chr3 34172899 34173045 -125426738 + Lx9 LINE L1 5822 5969 -1675 3 845 255 152 0 0 chr3 34173232 34173278 -125426505 + (CA)n Simple_repeat Simple_repeat 2 47 0 3 845 1866 270 33 33 chr3 34173301 34173914 -125425869 + Lx9 LINE L1 6232 6844 -800 3 845 180 0 0 0 chr3 34174061 34174081 -125425702 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 3 845 200 303 13 13 chr3 34174475 34174552 -125425231 + (TATATG)n Simple_repeat Simple_repeat 2 78 0 3 845 318 301 101 40 chr3 34174608 34174835 -125424948 - MIRb SINE MIR 0 268 28 3 845 450 49 0 0 chr3 34175671 34175732 -125424051 + (CAA)n Simple_repeat Simple_repeat 2 62 0 3 845 211 268 18 0 chr3 34176155 34176211 -125423572 + (TA)n Simple_repeat Simple_repeat 1 57 0 3 845 259 247 0 69 chr3 34177740 34177827 -125421956 + MLT1B LTR MaLR 1 81 -309 3 845 626 277 91 56 chr3 34178183 34178470 -125421313 + MLT1B LTR MaLR 92 388 -2 3 845 27 0 0 0 chr3 34178971 34178998 -125420785 + AT_rich Low_complexity Low_complexity 1 27 0 3 845 240 284 10 31 chr3 34179118 34179216 -125420567 - RLTR15 LTR ERVK -213 146 51 3 845 2377 89 6 55 chr3 34180133 34180477 -125419306 - ORR1A2 LTR MaLR 0 327 1 3 845 361 286 63 31 chr3 34180818 34180977 -125418806 + MER5A1 DNA MER1_type 3 166 0 3 845 24 0 0 0 chr3 34181744 34181768 -125418015 + AT_rich Low_complexity Low_complexity 1 24 0 3 845 2592 333 38 22 chr3 34181785 34182945 -125416838 - Lx8 LINE L1 -32 7441 6263 3 845 180 77 0 0 chr3 34182966 34182992 -125416791 + (CAA)n Simple_repeat Simple_repeat 2 27 0 3 845 597 150 57 28 chr3 34183006 34183160 -125416623 + B1_Mur4 SINE Alu 2 150 0 3 845 1398 219 173 96 chr3 34184381 34184423 -125415360 - MT2A LTR ERVL 0 533 494 3 845 306 125 0 0 chr3 34184423 34184471 -125415312 + (TG)n Simple_repeat Simple_repeat 1 48 0 3 845 1398 219 173 96 chr3 34184471 34184502 -125415281 - MT2A LTR ERVL -40 493 452 3 845 495 0 0 0 chr3 34184502 34184557 -125415226 + (TCTA)n Simple_repeat Simple_repeat 4 58 0 3 845 1398 219 173 96 chr3 34184557 34184973 -125414810 - MT2A LTR ERVL -82 451 5 3 845 862 261 122 23 chr3 34188292 34188720 -125411063 + L1MC4a LINE L1 7349 7818 -64 3 845 21 89 0 0 chr3 34188759 34188815 -125410968 + AT_rich Low_complexity Low_complexity 1 56 0 3 845 1470 195 62 89 chr3 34189574 34189669 -125410114 - MTD LTR MaLR -12 407 334 3 845 282 95 0 0 chr3 34189669 34189711 -125410072 + (CTTG)n Simple_repeat Simple_repeat 2 43 0 3 845 1470 195 62 89 chr3 34189711 34190021 -125409762 - MTD LTR MaLR -86 333 13 3 845 962 267 90 0 chr3 34190283 34190538 -125409245 - B4 SINE B4 0 292 15 3 845 208 235 39 0 chr3 34192937 34192988 -125406795 - MIRc SINE MIR -58 210 158 3 845 650 249 201 5 chr3 34193508 34193702 -125406081 + B4 SINE B4 54 285 -7 3 845 405 0 0 0 chr3 34193708 34193753 -125406030 + (CA)n Simple_repeat Simple_repeat 2 46 0 3 845 252 219 123 0 chr3 34193868 34193941 -125405842 + MLT1A0 LTR MaLR 1 82 -283 3 845 312 352 55 0 chr3 34194009 34194191 -125405592 + MLT1A0 LTR MaLR 172 363 -2 3 845 395 278 0 0 chr3 34194242 34194332 -125405451 + MLT1B LTR MaLR 289 378 -12 3 845 331 262 0 15 chr3 34194329 34194395 -125405388 + B4A SINE B4 222 286 -6 3 845 32 26 0 0 chr3 34194991 34195030 -125404753 + AT_rich Low_complexity Low_complexity 1 39 0 3 845 1237 183 147 75 chr3 34195361 34195516 -125404267 - ORR1D1 LTR MaLR -1 373 194 3 845 396 0 0 0 chr3 34195516 34195560 -125404223 + (GA)n Simple_repeat Simple_repeat 1 44 0 3 845 1237 183 147 75 chr3 34195560 34195752 -125404031 - ORR1D1 LTR MaLR -181 193 1 3 845 405 264 19 0 chr3 34195752 34195858 -125403925 + PB1D7 SINE Alu 12 119 -1 3 845 297 238 128 53 chr3 34197047 34197180 -125402603 - RLTR24 LTR ERV1 0 529 387 3 845 461 293 13 32 chr3 34197559 34197714 -125402069 + RSINE1 SINE B4 3 154 -11 3 845 387 0 0 0 chr3 34198445 34198488 -125401295 + (TA)n Simple_repeat Simple_repeat 2 44 0 3 845 274 267 33 22 chr3 34198685 34198777 -125401006 + AmnSINE1 SINE SINE 258 350 -225 3 845 4160 69 0 0 chr3 34199149 34199669 -125400114 + L1_Mus1 LINE L1 6048 6567 0 3 845 25 31 0 0 chr3 34199780 34199812 -125399971 + AT_rich Low_complexity Low_complexity 1 32 0 3 845 492 117 0 0 chr3 34200551 34200628 -125399155 + (CA)n Simple_repeat Simple_repeat 2 78 0 3 845 270 0 0 0 chr3 34200628 34200657 -125399126 + (GA)n Simple_repeat Simple_repeat 2 31 0 3 845 822 230 112 5 chr3 34201310 34201507 -125398276 + ID_B1 SINE B4 3 220 -4 3 845 389 267 0 10 chr3 34201597 34201699 -125398084 + B3A SINE B2 14 114 -84 3 845 643 327 38 79 chr3 34203032 34203324 -125396459 + B4A SINE B4 1 280 -12 3 845 408 273 0 0 chr3 34203375 34203529 -125396254 + (CA)n Simple_repeat Simple_repeat 1 154 0 3 845 456 239 6 12 chr3 34203564 34203729 -125396054 + (CA)n Simple_repeat Simple_repeat 1 164 0 3 845 327 104 0 0 chr3 34203745 34203793 -125395990 + HAL1-3A_ME LINE L1 1975 2022 -836 3 845 3109 155 54 23 chr3 34204104 34204677 -125395106 - Lx5 LINE L1 -4 7046 6456 3 845 513 274 111 0 chr3 34204921 34205056 -125394727 + ID_B1 SINE B4 2 151 -73 3 845 315 113 0 0 chr3 34205077 34205130 -125394653 + (TG)n Simple_repeat Simple_repeat 1 53 0 3 845 2142 70 60 3 chr3 34205837 34206138 -125393645 - L1Md_F2 LINE L1 0 6582 6265 3 845 790 247 161 12 chr3 34206990 34207244 -125392539 - B4 SINE B4 0 292 1 3 845 1350 160 4 9 chr3 34207257 34207484 -125392299 + URR1A DNA MER1_type 1 226 0 3 845 391 333 43 50 chr3 34207559 34207859 -125391924 + MER33 DNA MER1_type 17 314 -10 3 845 789 275 66 49 chr3 34208028 34208315 -125391468 - B4 SINE B4 0 292 1 3 845 34 55 0 0 chr3 34208975 34209030 -125390753 + AT_rich Low_complexity Low_complexity 1 55 0 3 845 493 225 96 44 chr3 34209041 34209176 -125390607 - ID_B1 SINE B4 -5 219 78 3 846 540 42 0 0 chr3 34210924 34210995 -125388788 + (TG)n Simple_repeat Simple_repeat 1 71 0 3 846 336 77 0 0 chr3 34211008 34211060 -125388723 + (CAAG)n Simple_repeat Simple_repeat 2 53 0 3 846 22 35 0 0 chr3 34211329 34211358 -125388425 + AT_rich Low_complexity Low_complexity 1 29 0 3 846 455 0 18 0 chr3 34212368 34212423 -125387360 + (TG)n Simple_repeat Simple_repeat 1 56 0 3 846 261 0 0 0 chr3 34214304 34214333 -125385450 + (TC)n Simple_repeat Simple_repeat 1 29 0 3 846 322 286 81 10 chr3 34214873 34214972 -125384811 + PB1D10 SINE Alu 1 106 -11 3 846 235 275 17 65 chr3 34215560 34215650 -125384133 + MIRc SINE MIR 44 141 -127 3 846 696 285 52 5 chr3 34215670 34215864 -125383919 + B4 SINE B4 3 205 -87 3 846 282 56 0 0 chr3 34215864 34215900 -125383883 + (GGA)n Simple_repeat Simple_repeat 1 36 0 3 846 324 0 0 0 chr3 34215943 34215979 -125383804 + (CA)n Simple_repeat Simple_repeat 2 37 0 3 846 202 217 0 21 chr3 34215993 34216040 -125383743 + GA-rich Low_complexity Low_complexity 4 49 0 3 846 1176 189 42 0 chr3 34216837 34217054 -125382729 - URR1A DNA MER1_type 0 226 1 3 846 311 234 13 0 chr3 34217401 34217478 -125382305 + B4A SINE B4 2 79 -213 3 846 501 276 50 22 chr3 34218712 34218949 -125380834 + B4A SINE B4 1 272 -20 3 846 414 341 2 0 chr3 34219207 34219345 -125380438 + B1F SINE Alu 1 140 -10 3 846 227 93 23 0 chr3 34219816 34219859 -125379924 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 3 846 354 274 30 38 chr3 34220625 34220758 -125379025 - ID_B1 SINE B4 -1 223 92 3 846 225 94 0 0 chr3 34222605 34222637 -125377146 + (TTTTTG)n Simple_repeat Simple_repeat 6 37 0 3 846 237 227 85 24 chr3 34222879 34222980 -125376803 - MIRc SINE MIR -110 158 56 3 846 309 219 9 17 chr3 34223316 34223432 -125376351 + (TG)n Simple_repeat Simple_repeat 2 116 0 3 846 495 0 0 0 chr3 34223524 34223579 -125376204 + (TC)n Simple_repeat Simple_repeat 2 56 0 3 846 581 270 76 32 chr3 34224429 34224586 -125375197 + RSINE1 SINE B4 2 165 0 3 846 23 0 0 0 chr3 34224882 34224905 -125374878 + AT_rich Low_complexity Low_complexity 1 23 0 3 846 23 0 0 0 chr3 34224911 34224934 -125374849 + AT_rich Low_complexity Low_complexity 1 23 0 3 846 230 352 0 0 chr3 34226421 34226512 -125373271 + CT-rich Low_complexity Low_complexity 1 91 0 3 846 192 286 27 125 chr3 34227762 34227874 -125371909 + L2c LINE L2 3286 3386 -1 3 846 450 79 0 0 chr3 34228460 34228523 -125371260 + (TG)n Simple_repeat Simple_repeat 1 63 0 3 846 793 267 59 56 chr3 34228569 34228855 -125370928 - B4A SINE B4 -4 288 2 3 846 864 177 97 0 chr3 34231099 34231274 -125368509 + URR1A DNA MER1_type 35 226 0 3 846 324 0 0 0 chr3 34231548 34231584 -125368199 + (CA)n Simple_repeat Simple_repeat 2 37 0 3 846 194 184 0 0 chr3 34233283 34233321 -125366462 + L2c LINE L2 3041 3078 -309 3 846 21 36 0 0 chr3 34235317 34235345 -125364438 + AT_rich Low_complexity Low_complexity 1 28 0 3 846 293 324 31 27 chr3 34236022 34236177 -125363606 + MIRb SINE MIR 69 226 -42 3 846 220 167 42 0 chr3 34236660 34236708 -125363075 - MIRm SINE MIR -140 136 87 3 846 209 224 20 0 chr3 34237431 34237480 -125362303 + (TATATG)n Simple_repeat Simple_repeat 5 54 0 3 846 291 338 27 7 chr3 34238671 34238817 -125360966 + MLT1E2 LTR MaLR 39 187 -440 3 846 27403 104 13 7 chr3 34238994 34240788 -125358995 - L1_Mus4 LINE L1 -89 6547 4738 3 846 360 0 0 0 chr3 34240788 34240828 -125358955 + (TTG)n Simple_repeat Simple_repeat 3 42 0 3 846 27403 150 13 14 chr3 34240828 34244934 -125354849 - L1_Mus4 LINE L1 -1146 4737 634 3 846 194 282 80 34 chr3 34244995 34245083 -125354700 + MIRb SINE MIR 111 202 -66 3 846 192 111 0 0 chr3 34245718 34245754 -125354029 + (T)n Simple_repeat Simple_repeat 1 36 0 3 846 300 246 108 54 chr3 34245847 34245976 -125353807 - B1F SINE Alu -8 141 6 3 846 299 253 0 37 chr3 34247636 34247718 -125352065 + ID2 SINE ID 3 81 -2 3 846 252 0 0 0 chr3 34247880 34247908 -125351875 + (CA)n Simple_repeat Simple_repeat 2 29 0 4 846 456 219 17 0 chr3 34248257 34248376 -125351407 - L1MA5 LINE L1 0 6300 6180 4 846 30 69 0 0 chr3 34248595 34248653 -125351130 + AT_rich Low_complexity Low_complexity 1 58 0 4 846 473 218 23 46 chr3 34248833 34248963 -125350820 - RSINE1 SINE B4 -31 134 8 4 846 26 0 0 0 chr3 34249734 34249760 -125350023 + AT_rich Low_complexity Low_complexity 1 26 0 4 846 38 0 0 0 chr3 34249900 34249938 -125349845 + AT_rich Low_complexity Low_complexity 1 38 0 4 846 853 142 30 0 chr3 34249948 34250082 -125349701 + B1_Mus1 SINE Alu 5 142 -6 4 846 181 140 23 23 chr3 34250083 34250127 -125349656 + (TAA)n Simple_repeat Simple_repeat 1 44 0 4 846 497 281 0 24 chr3 34252634 34252758 -125347025 - B4 SINE B4 -171 121 1 4 846 234 0 0 0 chr3 34252777 34252803 -125346980 + (TA)n Simple_repeat Simple_repeat 2 27 0 4 846 470 324 67 83 chr3 34254179 34254539 -125345244 + ORR1E LTR MaLR 1 354 -5 4 846 532 245 103 14 chr3 34254715 34254860 -125344923 + RSINE1 SINE B4 3 160 -5 4 846 1628 244 58 25 chr3 34254931 34255376 -125344407 + Lx7 LINE L1 6954 7413 -283 4 846 3646 191 87 65 chr3 34255370 34256245 -125343538 - RMER1B Other Other -4 1062 169 4 846 342 0 0 0 chr3 34257062 34257100 -125342683 + (TG)n Simple_repeat Simple_repeat 2 39 0 4 846 237 196 0 0 chr3 34257550 34257601 -125342182 + (CATA)n Simple_repeat Simple_repeat 4 54 0 4 846 303 28 0 0 chr3 34258203 34258239 -125341544 + (TG)n Simple_repeat Simple_repeat 2 37 0 4 846 1059 269 21 7 chr3 34258286 34258570 -125341213 - B4A SINE B4 0 292 5 4 846 563 275 90 77 chr3 34258893 34259192 -125340591 - L1MA5A LINE L1 -435 6564 6262 4 846 287 260 39 0 chr3 34259288 34259365 -125340418 - L1_Mur3 LINE L1 -1754 4126 4047 4 846 1696 296 72 28 chr3 34259410 34259714 -125340069 - L1MA5A LINE L1 -2806 4039 3730 4 846 742 226 86 10 chr3 34259714 34259911 -125339872 - B3 SINE B2 -3 213 2 4 846 1696 296 72 28 chr3 34259911 34260480 -125339303 - L1MA5A LINE L1 -3116 3729 3127 4 846 236 316 25 0 chr3 34260682 34260761 -125339022 + ID4 SINE ID 3 83 0 4 846 577 310 102 41 chr3 34260790 34261638 -125338145 - L1MA5A LINE L1 -3532 3017 2170 4 846 870 243 19 56 chr3 34261903 34262117 -125337666 + B3 SINE B2 2 207 -9 4 846 279 0 0 0 chr3 34262117 34262148 -125337635 + (TAAA)n Simple_repeat Simple_repeat 3 33 0 4 846 40002 36 1 13 chr3 34262149 34268242 -125331541 - L1Md_A LINE L1 -1 6584 563 4 846 197 210 16 0 chr3 34268280 34268342 -125331441 + GA-rich Low_complexity Low_complexity 2 64 0 4 846 311 306 58 0 chr3 34268501 34268622 -125331161 + B3A SINE B2 1 128 -70 4 846 330 274 30 23 chr3 34268816 34268947 -125330836 - Lx7 LINE L1 0 7696 7565 4 846 546 16 0 0 chr3 34268967 34269030 -125330753 + (CA)n Simple_repeat Simple_repeat 2 64 0 4 846 306 0 0 0 chr3 34269030 34269063 -125330720 + (GA)n Simple_repeat Simple_repeat 2 35 0 4 846 1262 263 20 38 chr3 34269063 34269455 -125330328 - Lx7 LINE L1 -397 7299 6915 4 846 433 245 0 0 chr3 34269957 34270055 -125329728 - PB1D10 SINE Alu -8 109 12 4 846 251 305 0 0 chr3 34270005 34270064 -125329719 - B4A SINE B4 -146 146 88 4 846 227 133 22 0 chr3 34270715 34270760 -125329023 + (TAAA)n Simple_repeat Simple_repeat 3 48 0 4 846 421 318 8 0 chr3 34272900 34273026 -125326757 + B4A SINE B4 49 175 -117 4 846 202 233 16 16 chr3 34273157 34273218 -125326565 + (CA)n Simple_repeat Simple_repeat 2 62 0 4 846 765 163 8 0 chr3 34274072 34274195 -125325588 + Lx8 LINE L1 6829 6952 -521 4 846 818 113 0 7 chr3 34274782 34274925 -125324858 + (TC)n Simple_repeat Simple_repeat 1 142 0 4 846 189 0 0 0 chr3 34274925 34274945 -125324838 + (CA)n Simple_repeat Simple_repeat 1 21 0 4 846 868 99 0 0 chr3 34275522 34275653 -125324130 + Lx2A1 LINE L1 6870 7000 -8 4 846 23 0 0 0 chr3 34275676 34275699 -125324084 + AT_rich Low_complexity Low_complexity 1 23 0 4 846 369 0 0 0 chr3 34275770 34275811 -125323972 + (TAA)n Simple_repeat Simple_repeat 2 42 0 4 846 414 0 0 0 chr3 34276653 34276699 -125323084 + (CA)n Simple_repeat Simple_repeat 1 46 0 4 846 531 0 0 0 chr3 34276699 34276757 -125323026 + (GA)n Simple_repeat Simple_repeat 2 60 0 4 846 584 116 0 10 chr3 34276832 34276928 -125322855 + (TTCC)n Simple_repeat Simple_repeat 2 96 0 4 846 192 40 0 0 chr3 34278283 34278308 -125321475 + (T)n Simple_repeat Simple_repeat 1 25 0 4 846 189 154 0 0 chr3 34278515 34278554 -125321229 + (TCTG)n Simple_repeat Simple_repeat 2 40 0 4 846 405 198 0 0 chr3 34278659 34278745 -125321038 + (TA)n Simple_repeat Simple_repeat 2 87 0 4 846 279 0 0 0 chr3 34281117 34281148 -125318635 + (TG)n Simple_repeat Simple_repeat 2 32 0 4 846 252 294 133 8 chr3 34281564 34281684 -125318099 + ID_B1 SINE B4 82 216 -8 4 846 213 175 25 0 chr3 34282029 34282069 -125317714 + (TAA)n Simple_repeat Simple_repeat 2 42 0 4 846 236 296 45 90 chr3 34282153 34282309 -125317474 + MLT1H2 LTR MaLR 36 184 -305 4 846 892 119 30 0 chr3 34282577 34282745 -125317038 + (TTC)n Simple_repeat Simple_repeat 2 174 0 4 846 1014 157 0 0 chr3 34282745 34282923 -125316860 + CT-rich Low_complexity Low_complexity 3 180 0 4 846 511 291 128 0 chr3 34282960 34283156 -125316627 - ID_B1 SINE B4 -1 223 3 4 846 218 351 0 0 chr3 34283569 34283646 -125316137 + ID4_ SINE ID 1 77 -6 4 846 23 0 0 0 chr3 34283955 34283978 -125315805 + AT_rich Low_complexity Low_complexity 1 23 0 4 846 689 172 0 7 chr3 34284583 34284735 -125315048 + (CA)n Simple_repeat Simple_repeat 1 151 0 4 846 409 269 31 171 chr3 34284753 34285040 -125314743 - Lx5 LINE L1 -1157 5893 5612 4 846 474 313 40 0 chr3 34286136 34286334 -125313449 - L1MA9 LINE L1 -286 6728 6523 4 846 298 178 34 45 chr3 34286440 34286617 -125313166 + (TCTA)n Simple_repeat Simple_repeat 2 176 0 4 846 879 134 0 0 chr3 34286813 34286992 -125312791 + (TC)n Simple_repeat Simple_repeat 2 180 0 4 846 1907 286 143 22 chr3 34287583 34288359 -125311424 - L1MA9 LINE L1 -1130 5712 4860 4 846 306 0 0 0 chr3 34288359 34288393 -125311390 + (TTCA)n Simple_repeat Simple_repeat 3 36 0 4 846 1907 286 140 23 chr3 34288393 34288867 -125310916 - L1MA9 LINE L1 -1983 4859 4304 4 846 357 117 0 0 chr3 34288998 34289058 -125310725 + (TA)n Simple_repeat Simple_repeat 2 61 0 4 846 867 249 15 1 chr3 34289291 34289498 -125310285 + B3A SINE B2 1 212 -4 4 846 376 206 120 31 chr3 34289554 34289745 -125310038 - L1MA9 LINE L1 -2864 3978 3771 4 846 254 246 72 0 chr3 34290090 34290159 -125309624 - ID4 SINE ID 0 83 10 4 846 388 172 7 71 chr3 34290326 34290468 -125309315 + B3A SINE B2 1 197 -1 4 846 338 250 146 18 chr3 34290498 34290719 -125309064 - L1MA9 LINE L1 -4243 2606 2400 4 846 396 0 0 0 chr3 34290857 34290901 -125308882 + (TC)n Simple_repeat Simple_repeat 1 44 0 4 846 496 311 31 11 chr3 34291012 34291298 -125308485 - L1MA9 LINE L1 -4695 2084 1793 4 846 615 231 7 20 chr3 34291298 34291448 -125308335 + ID_B1 SINE B4 37 184 -40 4 846 307 281 120 23 chr3 34291461 34291636 -125308147 - L1MA9 LINE L1 -4988 1781 1590 4 846 223 282 0 23 chr3 34293220 34293307 -125306476 + (TGG)n Simple_repeat Simple_repeat 2 86 0 4 846 697 271 90 43 chr3 34293823 34294101 -125305682 - B4A SINE B4 0 292 2 4 846 324 48 0 0 chr3 34294707 34294749 -125305034 + (TG)n Simple_repeat Simple_repeat 1 42 0 4 846 371 296 110 7 chr3 34294765 34294901 -125304882 - B3A SINE B2 -37 161 12 4 846 184 246 226 16 chr3 34294954 34295016 -125304767 - MIRc SINE MIR -161 107 33 4 846 238 321 0 0 chr3 34295665 34295749 -125304034 + (TG)n Simple_repeat Simple_repeat 2 85 0 4 846 345 204 29 29 chr3 34295751 34295923 -125303860 + (TATG)n Simple_repeat Simple_repeat 4 175 0 4 846 1190 232 16 63 chr3 34295926 34296229 -125303554 - B4 SINE B4 0 292 4 4 846 334 314 48 106 chr3 34297003 34297060 -125302723 - B4 SINE B4 -8 284 210 4 846 747 143 35 57 chr3 34297060 34297079 -125302704 - B1_Mur4 SINE Alu 0 150 134 4 846 279 0 0 0 chr3 34297079 34297110 -125302673 + (TTTG)n Simple_repeat Simple_repeat 4 34 0 4 846 747 143 35 57 chr3 34297110 34297231 -125302552 - B1_Mur4 SINE Alu -17 133 13 4 846 282 194 0 0 chr3 34297302 34297374 -125302409 + (TG)n Simple_repeat Simple_repeat 2 73 0 4 846 774 340 62 4 chr3 34297384 34297641 -125302142 - B4 SINE B4 0 292 21 4 846 1246 289 156 24 chr3 34298034 34298618 -125301165 - Lx8 LINE L1 -4 7469 6809 4 846 671 245 117 30 chr3 34298806 34299071 -125300712 - Lx8 LINE L1 -2 7471 7184 4 846 2020 238 73 32 chr3 34299116 34299166 -125300617 + Lx7 LINE L1 6827 6876 -820 4 846 2429 119 42 5 chr3 34299166 34299546 -125300237 - ORR1B1 LTR MaLR 0 394 1 4 846 2020 238 73 32 chr3 34299546 34300060 -125299723 + Lx7 LINE L1 6877 7414 -282 4 846 23 33 0 0 chr3 34300132 34300162 -125299621 + AT_rich Low_complexity Low_complexity 1 30 0 4 846 478 250 86 29 chr3 34300676 34300816 -125298967 + B1F1 SINE Alu 1 148 -1 4 846 929 221 14 40 chr3 34300843 34301065 -125298718 + B3 SINE B2 1 216 0 4 846 458 153 11 34 chr3 34301472 34301560 -125298223 + RSINE1 SINE B4 3 88 -77 4 846 1266 27 0 0 chr3 34301694 34301841 -125297942 + B1_Mus1 SINE Alu 2 148 0 4 846 243 79 0 0 chr3 34301841 34301879 -125297904 + (CAAAA)n Simple_repeat Simple_repeat 3 40 0 4 846 25 51 0 0 chr3 34304488 34304527 -125295256 + AT_rich Low_complexity Low_complexity 1 39 0 4 846 419 238 315 35 chr3 34305695 34305895 -125293888 + B4A SINE B4 11 266 -26 4 846 426 39 0 0 chr3 34305899 34305951 -125293832 + (TG)n Simple_repeat Simple_repeat 2 53 0 4 846 760 243 12 12 chr3 34306634 34306805 -125292978 + Lx9 LINE L1 7261 7431 -213 4 846 333 0 0 0 chr3 34306807 34306844 -125292939 + (TG)n Simple_repeat Simple_repeat 2 38 0 4 846 440 175 58 0 chr3 34306845 34306948 -125292835 + Lx9 LINE L1 7514 7622 -22 4 846 3033 161 81 7 chr3 34307660 34308229 -125291554 - Lx5 LINE L1 -641 6409 5799 4 846 1220 218 3 72 chr3 34308227 34308519 -125291264 + Lx5 LINE L1 6680 6951 -99 4 846 330 333 98 33 chr3 34313200 34313445 -125286338 + L1MB7 LINE L1 5923 6183 -1 4 846 292 221 61 69 chr3 34313559 34313690 -125286093 + L1MB2 LINE L1 6039 6168 -3 5 846 278 135 19 0 chr3 34313835 34313887 -125285896 + MADE2 DNA Mariner 27 79 -1 5 846 183 80 0 0 chr3 34313993 34314018 -125285765 + (TG)n Simple_repeat Simple_repeat 2 26 0 5 846 445 271 115 52 chr3 34314027 34314218 -125285565 - B4 SINE B4 0 292 90 5 846 866 172 0 14 chr3 34314298 34314445 -125285338 - B1_Mus2 SINE Alu -2 145 1 5 846 283 273 80 0 chr3 34314446 34314534 -125285249 - B4A SINE B4 -195 97 3 5 846 180 273 23 0 chr3 34316007 34316051 -125283732 + L2a LINE L2 3288 3332 -94 5 846 972 129 0 0 chr3 34318367 34318537 -125281246 + (TGGA)n Simple_repeat Simple_repeat 1 170 0 5 846 192 77 0 0 chr3 34318542 34318568 -125281215 + (TGGG)n Simple_repeat Simple_repeat 4 29 0 5 846 478 133 191 17 chr3 34319331 34319350 -125280433 - B1_Mur4 SINE Alu -3 147 129 5 846 261 0 0 0 chr3 34319350 34319379 -125280404 + (TG)n Simple_repeat Simple_repeat 2 30 0 5 846 478 133 191 17 chr3 34319379 34319474 -125280309 - B1_Mur4 SINE Alu -22 128 15 5 846 324 168 175 9 chr3 34319579 34319693 -125280090 + MER33 DNA MER1_type 71 203 -121 5 846 283 118 20 0 chr3 34319704 34319755 -125280028 + B1_Mus2 SINE Alu 33 84 -63 5 846 237 216 0 0 chr3 34319929 34319980 -125279803 - MTD LTR MaLR -201 218 168 5 846 929 210 65 0 chr3 34321074 34321274 -125278509 - B3 SINE B2 0 216 4 5 846 658 277 83 18 chr3 34321653 34321881 -125277902 - B4 SINE B4 -45 247 5 5 846 435 218 23 46 chr3 34322835 34322965 -125276818 + RSINE1 SINE B4 3 129 -36 5 846 198 103 0 0 chr3 34322967 34322996 -125276787 + (CA)n Simple_repeat Simple_repeat 2 30 0 5 846 325 254 40 118 chr3 34323458 34323610 -125276173 + B4 SINE B4 2 141 -151 5 846 28 0 0 0 chr3 34323697 34323725 -125276058 + AT_rich Low_complexity Low_complexity 1 28 0 5 846 249 81 118 118 chr3 34323895 34324064 -125275719 + (CTTA)n Simple_repeat Simple_repeat 4 172 0 5 846 602 37 12 0 chr3 34324528 34324609 -125275174 + (TC)n Simple_repeat Simple_repeat 2 83 0 5 846 870 103 50 29 chr3 34324639 34324779 -125275004 - B1_Mus2 SINE Alu 0 147 5 5 846 220 275 28 28 chr3 34324924 34324995 -125274788 + B4A SINE B4 2 72 -220 5 846 276 253 53 13 chr3 34325056 34325132 -125274651 + B4A SINE B4 169 247 -45 5 846 182 118 29 0 chr3 34325185 34325219 -125274564 + (CATA)n Simple_repeat Simple_repeat 4 38 0 5 846 638 289 40 25 chr3 34325271 34325473 -125274310 + ID_B1 SINE B4 2 206 -18 5 846 222 270 20 128 chr3 34325601 34325703 -125274080 + B4A SINE B4 3 93 -199 5 846 207 139 0 0 chr3 34325788 34325824 -125273959 + (CA)n Simple_repeat Simple_repeat 1 36 0 5 846 245 238 0 70 chr3 34326192 34326278 -125273505 + ID4 SINE ID 2 81 -2 5 846 831 285 68 7 chr3 34326325 34326706 -125273077 + L1MB4 LINE L1 5681 6123 -48 5 846 216 235 148 0 chr3 34326793 34326891 -125272892 - B1F1 SINE Alu 0 120 8 5 846 726 271 11 22 chr3 34327121 34327302 -125272481 + B3A SINE B2 2 180 -18 5 846 31 82 0 0 chr3 34327309 34327382 -125272401 + AT_rich Low_complexity Low_complexity 1 73 0 5 846 959 236 10 24 chr3 34327444 34327652 -125272131 + B3 SINE B2 2 206 -10 5 846 286 277 69 97 chr3 34328138 34328282 -125271501 + ID_B1 SINE B4 83 222 -2 5 846 500 336 31 5 chr3 34328753 34328977 -125270806 - MER2 DNA MER2_type -2 343 114 5 846 543 168 20 20 chr3 34329210 34329356 -125270427 + GA-rich Low_complexity Low_complexity 3 148 0 5 846 647 229 38 0 chr3 34329369 34329526 -125270257 - MTE2b LTR MaLR 0 379 217 5 846 668 221 137 72 chr3 34330024 34330273 -125269510 - MTE2b LTR MaLR -114 265 1 5 846 262 0 26 26 chr3 34330407 34330446 -125269337 + (TG)n Simple_repeat Simple_repeat 1 39 0 5 846 612 228 8 0 chr3 34330446 34330573 -125269210 - RSINE1 SINE B4 -34 131 4 5 846 1039 245 94 35 chr3 34331530 34331869 -125267914 + ORR1E LTR MaLR 1 359 0 5 846 741 268 156 4 chr3 34332119 34332363 -125267420 + B4A SINE B4 6 286 -6 5 846 210 208 0 0 chr3 34333019 34333067 -125266716 + (TATG)n Simple_repeat Simple_repeat 1 48 0 5 846 35 54 0 0 chr3 34334577 34334633 -125265150 + AT_rich Low_complexity Low_complexity 1 56 0 5 846 325 271 44 0 chr3 34335150 34335252 -125264531 + B1F1 SINE Alu 7 112 -37 5 846 202 109 21 42 chr3 34335289 34335337 -125264446 + GA-rich Low_complexity Low_complexity 2 48 0 5 846 24 53 0 0 chr3 34335790 34335828 -125263955 + AT_rich Low_complexity Low_complexity 1 38 0 5 846 235 289 98 8 chr3 34337196 34337318 -125262465 - L1M2 LINE L1 -500 5800 5668 5 846 488 223 41 1 chr3 34337333 34337468 -125262315 + L1MA6 LINE L1 5883 6028 -263 5 846 218 226 38 0 chr3 34337767 34337807 -125261976 + polypurine Low_complexity Low_complexity 2 43 0 5 846 554 0 0 15 chr3 34337807 34337874 -125261909 + (GGAGA)n Simple_repeat Simple_repeat 1 66 0 5 846 218 226 38 0 chr3 34337874 34337929 -125261854 + GA-rich Low_complexity Low_complexity 44 100 0 5 846 1247 84 6 0 chr3 34337929 34338107 -125261676 + (GAGAA)n Simple_repeat Simple_repeat 1 179 0 5 846 301 198 0 24 chr3 34339167 34339190 -125260593 + polypurine Low_complexity Low_complexity 3 25 0 5 846 1304 67 0 6 chr3 34339190 34339371 -125260412 + (GAA)n Simple_repeat Simple_repeat 1 180 0 5 846 301 198 0 24 chr3 34339371 34339430 -125260353 + GA-rich Low_complexity Low_complexity 26 83 0 5 846 25 31 0 0 chr3 34339951 34339983 -125259800 + AT_rich Low_complexity Low_complexity 1 32 0 5 847 21 57 0 0 chr3 34343554 34343589 -125256194 + AT_rich Low_complexity Low_complexity 1 35 0 5 847 950 208 69 0 chr3 34345644 34345846 -125253937 - B3 SINE B2 0 216 1 5 847 566 272 68 32 chr3 34346136 34346326 -125253457 + B3A SINE B2 1 197 -1 5 847 495 294 46 68 chr3 34347007 34347223 -125252560 - B4 SINE B4 -10 282 81 5 847 374 20 40 0 chr3 34347223 34347273 -125252510 + (TTTTG)n Simple_repeat Simple_repeat 1 52 0 5 847 495 291 47 61 chr3 34347273 34347325 -125252458 - B4 SINE B4 -209 83 31 5 847 396 295 18 0 chr3 34347519 34347631 -125252152 + PB1 SINE Alu 8 121 -6 5 847 1055 263 40 25 chr3 34347868 34348192 -125251591 - MTD LTR MaLR 0 419 91 5 847 761 251 0 12 chr3 34348845 34349010 -125250773 + RSINE1 SINE B4 3 165 0 5 847 310 307 79 69 chr3 34350188 34350377 -125249406 - MER21B LTR ERV1 -610 253 63 5 847 233 29 29 0 chr3 34350780 34350814 -125248969 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 5 847 821 174 14 0 chr3 34350816 34350954 -125248829 - B1_Mur4 SINE Alu -6 144 5 5 847 1751 221 32 32 chr3 34351258 34351641 -125248142 - Lx5 LINE L1 0 7050 6685 5 847 2404 225 15 13 chr3 34351650 34352122 -125247661 - Lx6 LINE L1 0 7460 6988 5 847 305 281 69 76 chr3 34352139 34352270 -125247513 + ID_B1 SINE B4 14 143 -81 5 847 261 0 0 0 chr3 34352373 34352402 -125247381 + (TTAA)n Simple_repeat Simple_repeat 4 32 0 5 847 492 62 0 0 chr3 34355588 34355652 -125244131 + (CA)n Simple_repeat Simple_repeat 1 64 0 5 847 326 248 37 19 chr3 34355668 34355775 -125244008 + L1MA7 LINE L1 6178 6286 -5 5 847 843 142 0 60 chr3 34357147 34357297 -125242486 - B1_Mur2 SINE Alu 0 149 9 5 847 259 213 67 0 chr3 34357475 34357550 -125242233 + Charlie8 DNA MER1_type 342 421 -2007 5 847 435 206 17 17 chr3 34358320 34358498 -125241285 + (TG)n Simple_repeat Simple_repeat 2 179 0 5 847 395 172 11 60 chr3 34358487 34358672 -125241111 + (TATG)n Simple_repeat Simple_repeat 3 178 0 5 847 221 194 0 0 chr3 34358877 34358913 -125240870 + ID_B1 SINE B4 81 116 -108 5 847 396 289 9 19 chr3 34358945 34359051 -125240732 + PB1D10 SINE Alu 1 105 -12 5 847 576 65 0 0 chr3 34359051 34359128 -125240655 + (TAGA)n Simple_repeat Simple_repeat 4 80 0 5 847 226 303 26 0 chr3 34359495 34359571 -125240212 + ID4_ SINE ID 2 79 -4 5 847 657 58 0 0 chr3 34359961 34360047 -125239736 + (TCTA)n Simple_repeat Simple_repeat 4 89 0 5 847 311 288 1 51 chr3 34360058 34360210 -125239573 + Lx7 LINE L1 7566 7696 0 5 847 182 86 0 79 chr3 34360212 34360250 -125239533 + A-rich Low_complexity Low_complexity 6 40 0 5 847 205 344 124 23 chr3 34360882 34361141 -125238642 - L2 LINE L2 -355 3064 2780 5 847 821 218 9 1 chr3 34361253 34361423 -125238360 + ID_B1 SINE B4 45 214 -10 5 847 288 262 36 64 chr3 34361563 34361673 -125238110 + PB1D10 SINE Alu 11 117 0 5 847 484 139 10 19 chr3 34362780 34362883 -125236900 + (TATAG)n Simple_repeat Simple_repeat 4 105 0 5 847 895 142 18 6 chr3 34363342 34363512 -125236271 + CT-rich Low_complexity Low_complexity 6 177 0 5 847 194 297 57 47 chr3 34365342 34365448 -125234335 - L2a LINE L2 -2 3424 3318 5 847 223 305 106 0 chr3 34365596 34365696 -125234087 + B3 SINE B2 77 188 -10 5 847 183 42 0 0 chr3 34365721 34365745 -125234038 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 5 847 200 35 35 0 chr3 34366301 34366330 -125233453 + (CA)n Simple_repeat Simple_repeat 2 31 0 5 847 733 225 172 40 chr3 34367274 34367524 -125232259 + B4A SINE B4 2 284 -8 5 847 251 240 8 23 chr3 34367554 34367682 -125232101 + (CATA)n Simple_repeat Simple_repeat 4 129 0 5 847 2294 144 22 22 chr3 34367694 34368106 -125231677 + MTC LTR MaLR 2 413 -8 5 847 205 203 7 72 chr3 34368112 34368250 -125231533 + (CATATA)n Simple_repeat Simple_repeat 6 134 0 5 847 1102 154 149 0 chr3 34368256 34368477 -125231306 - ORR1B2 LTR MaLR -8 359 106 5 847 2920 183 3 31 chr3 34368532 34369119 -125230664 - RLTR17 LTR ERVK -121 571 1 5 847 619 108 36 0 chr3 34369119 34369227 -125230556 - ORR1B2 LTR MaLR -255 112 1 5 847 189 74 0 0 chr3 34369263 34369290 -125230493 + (CA)n Simple_repeat Simple_repeat 2 28 0 5 847 513 322 103 29 chr3 34369342 34369585 -125230198 + Lx8 LINE L1 7011 7271 -202 6 847 189 312 84 36 chr3 34369781 34369864 -125229919 + MIRm SINE MIR 174 260 -16 6 847 232 337 49 93 chr3 34369908 34370134 -125229649 - MIR SINE MIR -32 236 21 6 847 279 0 0 0 chr3 34370492 34370523 -125229260 + (A)n Simple_repeat Simple_repeat 1 31 0 6 847 698 188 80 0 chr3 34370541 34370679 -125229104 + B1_Mur3 SINE Alu 1 149 0 6 847 252 0 0 0 chr3 34370694 34370722 -125229061 + (CAGA)n Simple_repeat Simple_repeat 2 29 0 6 847 639 48 0 0 chr3 34370742 34370825 -125228958 + (GGAA)n Simple_repeat Simple_repeat 1 83 0 6 847 526 274 62 31 chr3 34371322 34371514 -125228269 + B3A SINE B2 1 198 0 6 847 543 296 95 16 chr3 34371612 34371928 -125227855 - L1M5 LINE L1 -1762 4384 4044 6 847 2082 165 8 16 chr3 34372139 34372503 -125227280 - Lx9 LINE L1 -533 7111 6751 6 847 246 220 0 0 chr3 34372616 34372675 -125227108 + (CA)n Simple_repeat Simple_repeat 2 60 0 6 847 488 150 9 0 chr3 34373546 34373659 -125226124 + GA-rich Low_complexity Low_complexity 1 114 0 6 847 345 258 61 23 chr3 34373683 34373814 -125225969 + L1MA4 LINE L1 5804 5939 -361 6 847 285 210 0 0 chr3 34374093 34374155 -125225628 + (TA)n Simple_repeat Simple_repeat 2 63 0 6 847 1323 229 100 42 chr3 34374273 34374652 -125225131 - MTD LTR MaLR -14 405 5 6 847 378 0 0 0 chr3 34374788 34374830 -125224953 + (TC)n Simple_repeat Simple_repeat 1 42 0 6 847 2524 257 53 20 chr3 34374851 34375562 -125224221 - Lx7 LINE L1 -202 7494 6760 6 847 1735 176 14 101 chr3 34375608 34375661 -125224122 - ORR1C2 LTR MaLR -3 381 345 6 847 938 140 21 0 chr3 34375661 34375804 -125223979 - B1_Mus1 SINE Alu -2 146 1 6 847 1735 176 14 101 chr3 34375804 34376166 -125223617 - ORR1C2 LTR MaLR -40 344 2 6 847 2533 202 51 14 chr3 34376167 34376735 -125223048 - L1_Mur3 LINE L1 -3497 2383 1795 6 847 423 56 0 0 chr3 34377680 34377734 -125222049 + (TG)n Simple_repeat Simple_repeat 2 55 0 6 847 227 171 0 0 chr3 34377767 34377808 -125221975 + (TG)n Simple_repeat Simple_repeat 2 42 0 6 847 338 139 14 0 chr3 34377840 34377912 -125221871 + (TG)n Simple_repeat Simple_repeat 1 73 0 6 847 258 216 68 0 chr3 34378073 34378147 -125221636 + B1F SINE Alu 36 114 -35 6 847 395 285 134 42 chr3 34378928 34379093 -125220690 + ID_B1 SINE B4 2 179 -45 6 847 531 45 0 0 chr3 34379096 34379162 -125220621 + (GA)n Simple_repeat Simple_repeat 1 66 0 6 847 280 273 0 0 chr3 34379220 34379275 -125220508 + ID_B1 SINE B4 157 211 -13 6 847 329 0 24 0 chr3 34379883 34379924 -125219859 + (TTTG)n Simple_repeat Simple_repeat 4 45 0 6 847 215 103 26 0 chr3 34382281 34382320 -125217463 + (TG)n Simple_repeat Simple_repeat 1 40 0 6 847 307 304 2 2 chr3 34383721 34383818 -125215965 - B4A SINE B4 -127 97 1 6 847 1094 108 62 17 chr3 34384070 34384249 -125215534 + B2_Mm2 SINE B2 1 187 -8 6 847 584 219 17 0 chr3 34384469 34384588 -125215195 + ID_B1 SINE B4 91 211 -13 6 847 203 0 0 36 chr3 34385375 34385403 -125214380 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 6 847 26 0 0 0 chr3 34386017 34386043 -125213740 + AT_rich Low_complexity Low_complexity 1 26 0 6 847 913 316 9 40 chr3 34386546 34386896 -125212887 + Lx8 LINE L1 7031 7369 -104 6 847 1676 171 48 107 chr3 34386911 34387305 -125212478 - ORR1D1 LTR MaLR -3 371 1 6 847 772 194 29 6 chr3 34387600 34387781 -125212002 - B3 SINE B2 -1 192 1 6 847 1313 237 95 26 chr3 34387832 34388222 -125211561 - Lx8 LINE L1 -135 7338 6922 6 847 419 302 23 12 chr3 34388323 34388494 -125211289 - L1MB4 LINE L1 -140 6040 5868 6 847 579 29 0 0 chr3 34388635 34388704 -125211079 + (TTTC)n Simple_repeat Simple_repeat 2 70 0 6 847 23 0 0 0 chr3 34388722 34388745 -125211038 + AT_rich Low_complexity Low_complexity 1 23 0 6 847 4046 53 27 6 chr3 34389108 34389621 -125210162 + L1Md_F2 LINE L1 6059 6582 0 6 847 906 251 73 23 chr3 34390267 34390311 -125209472 - L1MB4 LINE L1 -766 5380 5335 6 847 498 263 143 60 chr3 34390311 34390493 -125209290 - B3A SINE B2 0 198 2 6 847 906 251 73 23 chr3 34390493 34390844 -125208939 - L1MB4 LINE L1 -812 5334 4965 6 847 679 214 26 13 chr3 34390931 34391087 -125208696 - MTD LTR MaLR 0 419 262 6 847 356 197 42 0 chr3 34391088 34391159 -125208624 + MERVL_2A-int LTR ERVL 4556 4629 -1132 6 847 360 288 27 9 chr3 34391259 34391371 -125208412 - MTD LTR MaLR -264 115 2 6 847 262 299 0 12 chr3 34391373 34391476 -125208307 - L1MB4 LINE L1 -1280 4866 4765 6 847 2814 61 0 55 chr3 34391665 34392065 -125207718 - L1Md_F2 LINE L1 -3 6579 6202 6 847 464 269 201 5 chr3 34392855 34393047 -125206736 + B4A SINE B4 2 231 -61 6 847 339 331 94 31 chr3 34393047 34393175 -125206608 + RSINE1 SINE B4 4 139 -26 6 847 423 0 0 0 chr3 34393175 34393222 -125206561 + (CA)n Simple_repeat Simple_repeat 1 47 0 6 847 348 77 0 0 chr3 34393351 34393403 -125206380 + (GA)n Simple_repeat Simple_repeat 2 53 0 6 847 522 0 0 0 chr3 34393594 34393652 -125206131 + (GAAA)n Simple_repeat Simple_repeat 2 59 0 6 847 236 348 154 14 chr3 34394014 34394157 -125205626 - RSINE1 SINE B4 0 165 3 6 847 656 286 24 47 chr3 34395352 34395565 -125204218 + B4 SINE B4 81 288 -4 6 847 245 284 137 0 chr3 34396319 34396414 -125203369 - PB1D10 SINE Alu -9 108 1 6 847 247 78 62 15 chr3 34396817 34396882 -125202901 + (TG)n Simple_repeat Simple_repeat 1 68 0 6 847 849 78 5 43 chr3 34396897 34397084 -125202699 + (TG)n Simple_repeat Simple_repeat 1 180 0 6 847 610 304 130 15 chr3 34397105 34397366 -125202417 - B4 SINE B4 0 292 2 6 847 543 319 118 0 chr3 34398035 34398383 -125201400 + MER74B LTR ERVL 91 479 -143 6 847 351 257 65 39 chr3 34398529 34398683 -125201100 - L1MA5 LINE L1 -2 6298 6141 6 847 435 292 43 103 chr3 34398707 34398940 -125200843 + B4A SINE B4 28 246 -46 6 847 483 134 45 23 chr3 34398949 34399125 -125200658 + (CAGA)n Simple_repeat Simple_repeat 1 180 0 6 847 4237 42 2 0 chr3 34399271 34399767 -125200016 + L1_Mus1 LINE L1 6071 6567 0 6 847 2464 150 34 10 chr3 34400379 34400790 -125198993 - MTC LTR MaLR 0 421 1 6 847 570 131 0 0 chr3 34400875 34400974 -125198809 + (TCCA)n Simple_repeat Simple_repeat 4 102 0 6 847 240 136 23 0 chr3 34400986 34401030 -125198753 + (TCTA)n Simple_repeat Simple_repeat 1 45 0 6 847 319 243 46 55 chr3 34401036 34401145 -125198638 - PB1D10 SINE Alu -8 109 2 6 847 643 258 16 11 chr3 34401966 34402150 -125197633 + ID_B1 SINE B4 24 208 -16 6 847 219 146 0 0 chr3 34403475 34403516 -125196267 + (T)n Simple_repeat Simple_repeat 1 41 0 6 847 853 242 28 9 chr3 34404120 34404333 -125195450 + ID_B1 SINE B4 3 219 -5 6 847 619 215 249 6 chr3 34404391 34404564 -125195219 - B3 SINE B2 0 216 2 6 847 643 211 0 160 chr3 34405341 34405382 -125194401 + B3A SINE B2 2 26 -172 6 847 787 176 0 39 chr3 34405382 34405536 -125194247 + B1_Mur2 SINE Alu 1 148 -1 6 847 643 211 0 160 chr3 34405536 34405663 -125194120 + B3A SINE B2 27 143 -55 6 847 503 31 15 0 chr3 34405675 34405740 -125194043 + (CA)n Simple_repeat Simple_repeat 1 66 0 6 847 253 284 85 12 chr3 34406305 34406387 -125193396 - 5S rRNA rRNA -1 120 33 6 847 1742 185 82 5 chr3 34406587 34406967 -125192816 + MTD LTR MaLR 1 409 -10 6 847 630 276 96 26 chr3 34407052 34407324 -125192459 - B4 SINE B4 0 292 2 6 847 24 0 0 0 chr3 34407382 34407406 -125192377 + AT_rich Low_complexity Low_complexity 1 24 0 6 847 456 211 78 0 chr3 34407887 34407977 -125191806 - RSINE1 SINE B4 -16 149 53 6 847 251 325 16 57 chr3 34408702 34408826 -125190957 + RSINE1 SINE B4 18 136 -29 6 847 374 176 12 0 chr3 34410115 34410200 -125189583 + GA-rich Low_complexity Low_complexity 3 88 0 6 847 759 136 60 8 chr3 34411171 34411304 -125188479 + B1_Mus1 SINE Alu 9 148 0 6 847 207 0 0 0 chr3 34411797 34411820 -125187963 + (A)n Simple_repeat Simple_repeat 1 23 0 6 847 273 294 0 0 chr3 34412356 34412424 -125187359 + RMER15 LTR ERVL 404 471 -104 6 847 605 238 14 7 chr3 34412638 34412782 -125187001 + B1_Mur1 SINE Alu 5 149 0 6 847 234 174 0 0 chr3 34413038 34413084 -125186699 + T-rich Low_complexity Low_complexity 2 47 0 6 847 313 289 63 126 chr3 34413240 34413414 -125186369 - RSINE1 SINE B4 0 165 3 6 847 958 134 0 13 chr3 34413530 34413681 -125186102 + B1_Mur2 SINE Alu 1 149 0 6 847 1889 188 17 40 chr3 34413832 34414253 -125185530 + MTD LTR MaLR 1 411 -8 6 847 1104 192 5 42 chr3 34414671 34414888 -125184895 + B3 SINE B2 2 210 -6 6 847 426 273 10 0 chr3 34415192 34415291 -125184492 + B4A SINE B4 193 292 0 6 847 217 211 0 66 chr3 34415309 34415333 -125184450 + (CA)n Simple_repeat Simple_repeat 2 25 0 6 847 3563 13 2 2 chr3 34415333 34415729 -125184054 + MTA_Mm LTR MaLR 1 396 0 6 847 9794 19 0 0 chr3 34415729 34416827 -125182956 + MTA_Mm-int LTR MaLR 1 1098 0 6 847 3563 13 2 2 chr3 34416827 34417223 -125182560 + MTA_Mm LTR MaLR 1 396 0 6 847 217 211 0 66 chr3 34417223 34417257 -125182526 + (CA)n Simple_repeat Simple_repeat 2 32 0 6 847 241 255 31 134 chr3 34417900 34418027 -125181756 - MIRb SINE MIR -67 201 88 6 847 415 295 0 0 chr3 34418107 34418219 -125181564 + L1MA8 LINE L1 6023 6134 -157 6 847 7781 51 12 21 chr3 34418379 34419399 -125180384 - L1Md_F2 LINE L1 -1 6581 5579 6 847 387 115 0 0 chr3 34419356 34419408 -125180375 + L1_Mm LINE L1 5561 5612 -271 6 847 323 299 74 42 chr3 34419415 34419631 -125180152 - Charlie1 DNA MER1_type -13 2768 2546 6 847 264 295 137 34 chr3 34419837 34420100 -125179683 - Charlie1 DNA MER1_type -461 2320 2031 6 847 442 280 82 26 chr3 34420100 34420294 -125179489 - Charlie1 DNA MER1_type -1001 1780 1576 6 847 583 75 0 0 chr3 34420292 34420372 -125179411 - RLTR1B LTR ERV1 -76 436 357 6 847 207 0 0 0 chr3 34421510 34421533 -125178250 + (T)n Simple_repeat Simple_repeat 1 23 0 6 847 21 36 0 0 chr3 34421725 34421753 -125178030 + AT_rich Low_complexity Low_complexity 1 28 0 6 847 1070 164 17 0 chr3 34422069 34422246 -125177537 - B2_Mm2 SINE B2 -14 181 2 6 847 396 0 0 0 chr3 34423557 34423601 -125176182 + (TGGA)n Simple_repeat Simple_repeat 2 45 0 6 847 621 239 14 0 chr3 34424077 34424215 -125175568 - RSINE1 SINE B4 -25 140 1 6 847 731 264 172 45 chr3 34424219 34424477 -125175306 - L1MA6 LINE L1 0 6300 6011 7 847 1648 206 72 9 chr3 34424477 34424825 -125174958 + ORR1D1 LTR MaLR 5 374 0 7 847 731 238 143 38 chr3 34424825 34425067 -125174716 - L1MA6 LINE L1 -290 6010 5736 7 847 420 137 0 27 chr3 34425222 34425297 -125174486 + B1_Mur1 SINE Alu 76 148 -1 7 847 696 291 45 57 chr3 34425304 34425705 -125174078 - L1M2 LINE L1 -1576 4567 4172 7 847 3431 208 43 1 chr3 34426079 34426774 -125173009 - Lx2B LINE L1 -6 6994 6271 7 847 2776 151 28 26 chr3 34426776 34427279 -125172504 + Lx3C LINE L1 5741 6244 -732 7 847 452 167 31 0 chr3 34427560 34427656 -125172127 + B1F1 SINE Alu 32 130 -19 7 847 219 103 0 0 chr3 34427773 34427812 -125171971 + (CAGAGA)n Simple_repeat Simple_repeat 6 44 0 7 847 778 215 10 54 chr3 34428086 34428297 -125171486 + B3A SINE B2 8 216 0 7 847 210 270 139 10 chr3 34429684 34429785 -125169998 + MIR SINE MIR 90 203 -59 7 847 21 36 0 0 chr3 34429922 34429950 -125169833 + AT_rich Low_complexity Low_complexity 1 28 0 7 847 692 241 66 5 chr3 34430093 34430289 -125169494 + ID_B1 SINE B4 2 209 -15 7 847 185 65 32 0 chr3 34431961 34431992 -125167791 + (CATAT)n Simple_repeat Simple_repeat 1 32 0 7 847 474 324 49 0 chr3 34432091 34432233 -125167550 - RSINE1 SINE B4 -13 152 4 7 847 1212 233 55 45 chr3 34432393 34432770 -125167013 - MTE2a LTR MaLR -2 417 27 7 847 338 194 69 39 chr3 34433065 34433167 -125166616 + B4A SINE B4 126 230 -62 7 847 632 186 0 0 chr3 34433187 34433300 -125166483 + B1_Mur3 SINE Alu 5 117 -32 7 847 348 198 0 133 chr3 34433330 34433435 -125166348 + B4A SINE B4 198 288 -4 7 847 271 234 0 15 chr3 34433454 34433519 -125166264 + (CATA)n Simple_repeat Simple_repeat 3 66 0 7 847 304 248 180 41 chr3 34434152 34434262 -125165521 - B4A SINE B4 0 292 166 7 847 1788 203 88 18 chr3 34434262 34434509 -125165274 - MTD LTR MaLR 0 419 140 7 847 2307 128 39 6 chr3 34434509 34434864 -125164919 - ORR1B2 LTR MaLR 0 367 1 7 847 1788 203 88 18 chr3 34434864 34435003 -125164780 - MTD LTR MaLR -280 139 6 7 847 596 276 55 0 chr3 34434993 34435156 -125164627 - B4A SINE B4 -120 172 1 7 847 1181 260 136 146 chr3 34435640 34437041 -125162742 + L1MA4 LINE L1 3814 5199 -944 7 847 446 261 92 27 chr3 34437045 34437230 -125162553 - RMER30 DNA MER1_type -1 201 5 7 847 1057 280 88 26 chr3 34437235 34437951 -125161832 + L1MA4 LINE L1 5142 6004 -293 7 847 585 0 0 0 chr3 34437987 34438052 -125161731 + (TG)n Simple_repeat Simple_repeat 2 66 0 7 847 382 335 65 7 chr3 34438316 34438469 -125161314 + RSINE1 SINE B4 2 163 -2 7 847 744 168 0 0 chr3 34438509 34438682 -125161101 + GA-rich Low_complexity Low_complexity 2 174 0 7 847 24 0 0 0 chr3 34438750 34438774 -125161009 + AT_rich Low_complexity Low_complexity 1 24 0 7 847 493 263 114 34 chr3 34438997 34439261 -125160522 - MLT1A0 LTR MaLR -2 363 79 7 847 324 70 0 0 chr3 34439411 34439454 -125160329 + (TCTG)n Simple_repeat Simple_repeat 4 46 0 7 847 327 255 147 11 chr3 34439567 34439662 -125160121 + PB1D10 SINE Alu 1 108 -9 7 847 499 206 0 29 chr3 34439689 34439864 -125159919 + G-rich Low_complexity Low_complexity 4 173 0 7 847 524 195 0 38 chr3 34439875 34440225 -125159558 + G-rich Low_complexity Low_complexity 1 336 0 7 847 818 185 141 0 chr3 34440557 34440741 -125159042 + B3 SINE B2 1 210 -6 7 847 430 230 0 0 chr3 34440742 34440829 -125158954 + Lx9 LINE L1 7304 7390 -254 7 847 300 53 0 0 chr3 34440842 34440880 -125158903 + (CA)n Simple_repeat Simple_repeat 2 39 0 7 847 2266 154 55 2 chr3 34440884 34441330 -125158453 + RLTR19 LTR ERVK 1 493 -6 7 847 452 159 351 6 chr3 34441337 34441401 -125158382 + Lx9 LINE L1 7423 7487 -157 7 847 285 29 0 0 chr3 34441401 34441435 -125158348 + (TG)n Simple_repeat Simple_repeat 1 34 0 7 847 452 159 351 6 chr3 34441435 34441535 -125158248 + Lx9 LINE L1 7488 7643 -1 7 847 31809 69 16 9 chr3 34441541 34447717 -125152066 - L1Md_F2 LINE L1 0 6582 373 7 847 22 56 0 0 chr3 34447845 34447881 -125151902 + AT_rich Low_complexity Low_complexity 1 36 0 7 847 248 288 25 0 chr3 34447911 34447991 -125151792 - PB1 SINE Alu -7 120 39 7 847 1010 134 188 0 chr3 34448065 34448251 -125151532 + URR1B DNA MER1_type 5 225 0 7 847 22 0 0 0 chr3 34449221 34449243 -125150540 + AT_rich Low_complexity Low_complexity 1 22 0 7 847 192 97 0 0 chr3 34449699 34449730 -125150053 + (CTGGGG)n Simple_repeat Simple_repeat 1 31 0 7 847 463 212 17 17 chr3 34449797 34449912 -125149871 - PB1D10 SINE Alu -1 116 2 7 847 243 230 86 65 chr3 34449834 34449927 -125149856 - B4A SINE B4 -123 169 75 7 847 29 0 0 0 chr3 34450553 34450582 -125149201 + AT_rich Low_complexity Low_complexity 1 29 0 7 847 984 246 5 19 chr3 34450594 34450805 -125148978 - ID_B1 SINE B4 -3 221 14 7 847 227 272 0 80 chr3 34451012 34451100 -125148683 + PB1D10 SINE Alu 30 110 -7 7 847 237 265 0 14 chr3 34452297 34452366 -125147417 + ID_B1 SINE B4 156 223 -1 7 847 1758 142 14 102 chr3 34452727 34453088 -125146695 + ORR1A4 LTR MaLR 1 329 0 7 847 332 250 117 0 chr3 34453598 34453718 -125146065 - RSINE1 SINE B4 -29 136 3 7 847 305 252 76 25 chr3 34453964 34454040 -125145743 + B1F SINE Alu 25 105 -44 7 847 3287 166 232 15 chr3 34454040 34454786 -125144997 + RMER13B LTR ERVK 1 908 0 7 847 305 252 76 25 chr3 34454786 34454827 -125144956 + B1F SINE Alu 106 147 -2 7 847 931 144 0 14 chr3 34454835 34454976 -125144807 + B1_Mus2 SINE Alu 1 139 -8 7 847 304 214 51 93 chr3 34455006 34455114 -125144669 + B4A SINE B4 18 129 -163 7 847 180 77 0 0 chr3 34455257 34455283 -125144500 + (CCCCCA)n Simple_repeat Simple_repeat 3 28 0 7 847 1310 208 164 6 chr3 34455320 34455668 -125144115 - MTC LTR MaLR -6 415 13 7 847 210 37 0 0 chr3 34455668 34455695 -125144088 + (CAA)n Simple_repeat Simple_repeat 2 28 0 7 847 1161 177 102 20 chr3 34455701 34455955 -125143828 + MTD LTR MaLR 80 354 -65 7 847 319 291 0 0 chr3 34456052 34456138 -125143645 + B4A SINE B4 186 271 -21 7 847 268 291 13 0 chr3 34456159 34456202 -125143581 + (CATATA)n Simple_repeat Simple_repeat 4 47 0 7 847 3092 72 10 12 chr3 34456202 34456610 -125143173 - MTB_Mm LTR MaLR 0 407 1 7 847 268 291 13 0 chr3 34456610 34456645 -125143138 + (CATATA)n Simple_repeat Simple_repeat 6 40 0 7 847 213 176 13 26 chr3 34456677 34456753 -125143030 + (TAA)n Simple_repeat Simple_repeat 1 75 0 7 847 404 284 100 13 chr3 34457100 34457250 -125142533 + ID_B1 SINE B4 6 168 -56 7 847 356 234 31 31 chr3 34457175 34457272 -125142511 + PB1D10 SINE Alu 15 111 -6 7 847 21 0 0 0 chr3 34457694 34457715 -125142068 + GC_rich Low_complexity Low_complexity 1 21 0 7 847 263 84 13 66 chr3 34458918 34458994 -125140789 + T-rich Low_complexity Low_complexity 2 73 0 7 847 315 213 0 0 chr3 34459184 34459259 -125140524 + A-rich Low_complexity Low_complexity 1 75 0 7 847 212 143 0 23 chr3 34459591 34459634 -125140149 + CT-rich Low_complexity Low_complexity 2 43 0 7 847 381 70 0 0 chr3 34460093 34460150 -125139633 + (T)n Simple_repeat Simple_repeat 1 57 0 7 847 429 54 0 0 chr3 34460985 34461041 -125138742 + (TG)n Simple_repeat Simple_repeat 2 57 0 7 847 291 54 0 0 chr3 34461678 34461715 -125138068 + (TA)n Simple_repeat Simple_repeat 1 37 0 7 847 23 0 0 0 chr3 34462483 34462506 -125137277 + AT_rich Low_complexity Low_complexity 1 23 0 7 847 363 23 0 0 chr3 34463637 34463681 -125136102 + (TG)n Simple_repeat Simple_repeat 2 45 0 7 847 299 113 19 0 chr3 34463704 34463757 -125136026 + (TA)n Simple_repeat Simple_repeat 1 54 0 7 847 216 188 0 0 chr3 34464177 34464225 -125135558 + T-rich Low_complexity Low_complexity 1 48 0 7 847 859 286 62 0 chr3 34466362 34466603 -125133180 - B4A SINE B4 0 292 37 7 847 267 79 0 0 chr3 34466788 34466826 -125132957 + (CA)n Simple_repeat Simple_repeat 1 38 0 7 847 228 130 0 0 chr3 34467655 34467701 -125132082 + (CA)n Simple_repeat Simple_repeat 2 47 0 7 847 279 0 0 0 chr3 34468204 34468235 -125131548 + (GA)n Simple_repeat Simple_repeat 1 31 0 7 847 567 43 0 0 chr3 34468235 34468305 -125131478 + (GGAA)n Simple_repeat Simple_repeat 4 73 0 7 847 351 141 0 0 chr3 34468313 34468391 -125131392 + (CA)n Simple_repeat Simple_repeat 2 79 0 7 847 746 157 201 27 chr3 34468394 34468547 -125131236 + B3 SINE B2 1 177 -39 7 847 198 128 0 0 chr3 34468547 34468586 -125131197 + (CAGA)n Simple_repeat Simple_repeat 4 42 0 7 847 746 157 201 27 chr3 34468586 34468616 -125131167 + B3 SINE B2 178 215 -1 7 847 883 188 0 0 chr3 34468620 34468769 -125131014 + B1_Mur2 SINE Alu 1 149 0 7 847 230 320 47 31 chr3 34469349 34469478 -125130305 + MER5B DNA MER1_type 46 176 -2 7 847 841 234 106 10 chr3 34469700 34469905 -125129878 + B4A SINE B4 8 232 -60 7 847 766 182 0 14 chr3 34469905 34470044 -125129739 + B1_Mur1 SINE Alu 2 138 -11 7 847 333 0 0 0 chr3 34470044 34470081 -125129702 + (TAGA)n Simple_repeat Simple_repeat 4 40 0 7 847 558 273 31 8 chr3 34470133 34470262 -125129521 + RSINE1 SINE B4 3 134 -31 7 847 374 217 0 0 chr3 34470318 34470387 -125129396 + B4A SINE B4 222 290 -2 7 847 338 61 20 0 chr3 34471412 34471461 -125128322 + (TCC)n Simple_repeat Simple_repeat 2 51 0 7 848 199 304 59 52 chr3 34472940 34473093 -125126690 + L2c LINE L2 3183 3336 -51 7 848 636 258 0 23 chr3 34473512 34473643 -125126140 + RSINE1 SINE B4 28 155 -10 7 848 522 259 13 20 chr3 34473725 34473875 -125125908 + B1_Mur1 SINE Alu 1 149 0 7 848 208 267 0 0 chr3 34474261 34474306 -125125477 + (CA)n Simple_repeat Simple_repeat 2 46 0 7 848 328 333 0 9 chr3 34474575 34474687 -125125096 + PB1D10 SINE Alu 1 111 -6 7 848 470 227 0 10 chr3 34474687 34474785 -125124998 + ID_B1 SINE B4 91 187 -37 7 848 396 254 8 53 chr3 34475023 34475156 -125124627 - ID_B1 SINE B4 -5 219 93 7 848 905 184 119 25 chr3 34475597 34475798 -125123985 - URR1B DNA MER1_type 0 225 6 7 848 279 54 0 0 chr3 34476574 34476611 -125123172 + (GA)n Simple_repeat Simple_repeat 1 37 0 8 848 260 186 17 0 chr3 34477143 34477202 -125122581 + GA-rich Low_complexity Low_complexity 2 61 0 8 848 36 40 0 0 chr3 34477613 34477663 -125122120 + AT_rich Low_complexity Low_complexity 1 50 0 8 848 339 25 0 0 chr3 34478387 34478427 -125121356 + (CTACT)n Simple_repeat Simple_repeat 1 40 0 8 848 555 62 0 0 chr3 34478812 34478892 -125120891 + (TG)n Simple_repeat Simple_repeat 2 81 0 8 848 475 200 14 7 chr3 34479102 34479257 -125120526 + CT-rich Low_complexity Low_complexity 1 156 0 8 848 217 245 57 0 chr3 34479351 34479404 -125120379 - MIRc SINE MIR -128 140 85 8 848 270 0 0 0 chr3 34480390 34480420 -125119363 + (TA)n Simple_repeat Simple_repeat 2 31 0 8 848 207 0 0 0 chr3 34480565 34480588 -125119195 + (TG)n Simple_repeat Simple_repeat 2 24 0 8 848 772 232 132 0 chr3 34480759 34480949 -125118834 + B3 SINE B2 2 216 0 8 848 355 274 0 112 chr3 34481098 34481205 -125118578 - PB1D7 SINE Alu -11 109 15 8 848 287 289 65 93 chr3 34481551 34481658 -125118125 - B4 SINE B4 -2 290 187 8 848 262 278 33 0 chr3 34481677 34481767 -125118016 + B4 SINE B4 32 124 -168 8 848 3093 39 0 0 chr3 34481767 34482124 -125117659 - L1_Mm LINE L1 -139 5744 5388 8 848 2657 46 3 3 chr3 34482124 34482453 -125117330 + L1Md_F3 LINE L1 6256 6584 0 8 848 262 350 32 32 chr3 34482466 34482557 -125117226 + B4 SINE B4 112 204 -88 8 848 501 62 0 0 chr3 34482557 34482622 -125117161 + (TA)n Simple_repeat Simple_repeat 2 66 0 8 848 262 350 32 32 chr3 34482622 34482654 -125117129 + B4 SINE B4 205 235 -57 8 848 213 94 0 0 chr3 34482654 34482686 -125117097 + (CA)n Simple_repeat Simple_repeat 1 32 0 8 848 722 274 94 40 chr3 34483737 34484014 -125115769 + B4A SINE B4 1 292 0 8 848 216 0 0 0 chr3 34484016 34484040 -125115743 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 8 848 240 304 94 17 chr3 34484491 34484608 -125115175 + MIR SINE MIR 13 138 -124 8 848 1535 169 74 55 chr3 34484644 34485007 -125114776 + ORR1D1 LTR MaLR 5 374 0 8 848 491 257 2 0 chr3 34485411 34485528 -125114255 - B1_Mur2 SINE Alu 0 120 2 8 848 204 67 0 0 chr3 34485813 34485843 -125113940 + (T)n Simple_repeat Simple_repeat 1 30 0 8 848 210 37 0 0 chr3 34485847 34485874 -125113909 + (GTTTG)n Simple_repeat Simple_repeat 2 28 0 8 848 306 0 0 0 chr3 34485887 34485921 -125113862 + (TTTTA)n Simple_repeat Simple_repeat 5 38 0 8 848 1064 77 7 0 chr3 34485924 34486067 -125113716 - B2_Mm2 SINE B2 -50 145 2 8 848 1231 35 7 0 chr3 34486539 34486684 -125113099 + B1_Mus1 SINE Alu 2 147 -1 8 848 180 182 0 0 chr3 34486685 34486729 -125113054 + A-rich Low_complexity Low_complexity 1 44 0 8 848 840 200 0 0 chr3 34487054 34487234 -125112549 + CT-rich Low_complexity Low_complexity 1 180 0 8 848 254 254 31 16 chr3 34487245 34487309 -125112474 + B4 SINE B4 33 97 -195 8 848 610 243 29 29 chr3 34487330 34487470 -125112313 + RSINE1 SINE B4 26 165 0 8 848 587 263 72 43 chr3 34487500 34487707 -125112076 + B4 SINE B4 80 292 0 8 848 319 182 26 0 chr3 34488298 34488375 -125111408 + GA-rich Low_complexity Low_complexity 1 79 0 8 848 348 24 0 0 chr3 34489096 34489137 -125110646 + (CA)n Simple_repeat Simple_repeat 2 42 0 8 848 468 0 0 0 chr3 34489434 34489486 -125110297 + (TG)n Simple_repeat Simple_repeat 1 52 0 8 848 192 77 0 0 chr3 34489486 34489511 -125110272 + (CG)n Simple_repeat Simple_repeat 2 27 0 8 848 518 226 192 18 chr3 34489528 34489695 -125110088 - B4 SINE B4 -61 231 36 8 848 270 284 11 0 chr3 34489908 34489996 -125109787 + Lx8 LINE L1 7382 7470 -3 8 848 367 267 103 8 chr3 34490630 34490641 -125109142 - ID_B1 SINE B4 -1 223 213 8 848 607 12 35 23 chr3 34490641 34490728 -125109055 + (GTTTG)n Simple_repeat Simple_repeat 3 90 0 8 848 367 267 103 8 chr3 34490728 34490833 -125108950 - ID_B1 SINE B4 -12 212 96 8 848 371 255 65 39 chr3 34490892 34491047 -125108736 + MLT1C LTR MaLR 156 314 -153 8 848 309 296 0 0 chr3 34491494 34491565 -125108218 + ID SINE ID 12 82 -142 8 848 514 292 49 64 chr3 34491573 34491840 -125107943 - MLT1C LTR MaLR -194 273 11 8 848 606 217 7 80 chr3 34491915 34492065 -125107718 + B1_Mur1 SINE Alu 1 139 -10 8 848 918 245 38 5 chr3 34492078 34492287 -125107496 + B3 SINE B2 1 216 0 8 848 217 263 0 17 chr3 34492293 34492351 -125107432 + GA-rich Low_complexity Low_complexity 4 60 0 8 848 660 26 0 0 chr3 34492482 34492560 -125107223 + (GAAA)n Simple_repeat Simple_repeat 3 80 0 8 848 299 349 24 0 chr3 34493029 34493155 -125106628 - RMER30 DNA MER1_type -1 201 73 8 848 360 198 57 86 chr3 34493174 34493279 -125106504 - RMER30 DNA MER1_type -100 102 1 8 848 606 262 134 23 chr3 34493867 34494066 -125105717 + B4A SINE B4 2 218 -74 8 848 252 122 0 0 chr3 34494066 34494107 -125105676 + (ATG)n Simple_repeat Simple_repeat 2 42 0 8 848 606 262 134 23 chr3 34494107 34494169 -125105614 + B4A SINE B4 219 291 -1 8 848 232 167 41 10 chr3 34494203 34494300 -125105483 + (CA)n Simple_repeat Simple_repeat 2 101 0 8 848 263 235 129 0 chr3 34494715 34494800 -125104983 + PB1 SINE Alu 32 127 0 8 848 860 187 88 54 chr3 34494816 34495020 -125104763 + B3 SINE B2 1 211 -5 8 848 215 143 0 0 chr3 34495108 34495143 -125104640 - ID4 SINE ID -44 39 5 8 848 318 289 16 62 chr3 34495170 34495299 -125104484 - PB1 SINE Alu -3 124 2 8 848 425 170 0 11 chr3 34497929 34498018 -125101765 + GA-rich Low_complexity Low_complexity 4 91 0 8 848 669 243 7 0 chr3 34498171 34498311 -125101472 - B1_Mur1 SINE Alu -8 141 1 8 848 351 237 134 0 chr3 34498343 34498440 -125101343 + PB1D10 SINE Alu 1 110 -7 8 848 465 331 38 0 chr3 34498452 34498609 -125101174 + ID_B1 SINE B4 2 164 -60 8 848 204 232 32 26 chr3 34498791 34498946 -125100837 + (CA)n Simple_repeat Simple_repeat 2 157 0 8 848 325 164 22 66 chr3 34498975 34499158 -125100625 + (CATA)n Simple_repeat Simple_repeat 4 178 0 8 848 397 241 30 41 chr3 34499158 34499327 -125100456 + (CA)n Simple_repeat Simple_repeat 1 167 0 8 848 1032 236 10 0 chr3 34500149 34500357 -125099426 - B3 SINE B2 -5 211 2 1 848 1258 21 7 0 chr3 34500532 34500676 -125099107 + B1_Mm SINE Alu 2 146 -1 2 848 420 221 84 0 chr3 34500708 34500803 -125098980 + B1F2 SINE Alu 47 149 0 3 848 493 237 130 41 chr3 34500818 34500941 -125098842 + ID_B1 SINE B4 84 217 -7 4 848 266 271 105 16 chr3 34501101 34501225 -125098558 + L1M5 LINE L1 5551 5685 -555 5 848 289 240 25 51 chr3 34502001 34502080 -125097703 - ID4_ SINE ID -6 77 1 6 848 492 264 19 31 chr3 34502309 34502469 -125097314 + RSINE1 SINE B4 4 161 -4 7 848 206 148 55 18 chr3 34502596 34502651 -125097132 + (CATATA)n Simple_repeat Simple_repeat 4 60 0 8 848 24 0 0 0 chr3 34502693 34502717 -125097066 + AT_rich Low_complexity Low_complexity 1 24 0 9 848 1840 158 90 12 chr3 34502742 34503075 -125096708 + ORR1D1 LTR MaLR 7 365 -9 1 848 286 262 8 130 chr3 34503219 34503323 -125096460 + PB1D10 SINE Alu 7 97 -20 1 848 243 0 0 0 chr3 34503323 34503350 -125096433 + (TAAA)n Simple_repeat Simple_repeat 1 27 0 1 848 286 262 8 130 chr3 34503350 34503368 -125096415 + PB1D10 SINE Alu 98 114 -3 1 848 1045 94 6 6 chr3 34503757 34503918 -125095865 + (GAA)n Simple_repeat Simple_repeat 2 162 0 1 848 597 254 254 0 chr3 34503946 34504119 -125095664 + ID_B1 SINE B4 5 221 -3 1 848 348 265 0 0 chr3 34504206 34504342 -125095441 + (TG)n Simple_repeat Simple_repeat 1 136 0 1 848 1294 79 17 0 chr3 34505095 34505273 -125094510 + B2_Mm2 SINE B2 15 195 0 1 848 369 0 0 0 chr3 34505808 34505849 -125093934 + (TG)n Simple_repeat Simple_repeat 1 41 0 1 848 497 214 9 19 chr3 34505962 34506067 -125093716 - RSINE1 SINE B4 -60 105 2 1 848 1197 89 0 0 chr3 34506185 34506353 -125093430 + (TCCCC)n Simple_repeat Simple_repeat 4 171 0 1 848 315 0 0 0 chr3 34506399 34506434 -125093349 + (TC)n Simple_repeat Simple_repeat 1 35 0 2 848 286 269 17 24 chr3 34506848 34506945 -125092838 - ID4 SINE ID -52 100 5 2 848 247 271 29 0 chr3 34508010 34508080 -125091703 + ID2 SINE ID 1 72 -11 2 848 585 237 50 29 chr3 34508087 34508226 -125091557 - MTD LTR MaLR -232 187 46 2 848 781 170 7 15 chr3 34508226 34508363 -125091420 + B1_Mur4 SINE Alu 7 142 -8 2 848 393 136 0 57 chr3 34508380 34508450 -125091333 - MTD LTR MaLR -355 66 1 2 848 748 229 0 38 chr3 34508488 34508647 -125091136 + RSINE1 SINE B4 4 156 -9 2 848 26 30 0 0 chr3 34508666 34508699 -125091084 + AT_rich Low_complexity Low_complexity 1 33 0 2 848 396 286 47 54 chr3 34508715 34508863 -125090920 - B1F1 SINE Alu -1 148 2 2 848 393 330 60 16 chr3 34509047 34509269 -125090514 + MIR SINE MIR 34 268 0 2 848 256 226 34 2 chr3 34509292 34509361 -125090422 - Lx5 LINE L1 -374 5750 5650 2 848 567 199 338 9 chr3 34509708 34509921 -125089862 + B4A SINE B4 4 286 -6 3 848 199 373 46 31 chr3 34510319 34510449 -125089334 - MIRc SINE MIR -119 149 18 3 848 603 242 123 32 chr3 34511012 34511166 -125088617 + B3A SINE B2 3 170 -28 3 848 357 257 93 28 chr3 34511766 34511874 -125087909 - RMER30 DNA MER1_type -1 201 87 3 848 859 159 78 24 chr3 34511919 34512086 -125087697 + ORR1D1 LTR MaLR 1 176 -198 3 848 297 0 0 0 chr3 34512171 34512204 -125087579 + (TG)n Simple_repeat Simple_repeat 1 33 0 3 848 372 43 0 0 chr3 34512204 34512249 -125087534 + (GA)n Simple_repeat Simple_repeat 1 46 0 3 848 316 300 32 32 chr3 34512493 34512586 -125087197 + PB1D10 SINE Alu 25 117 0 3 848 882 162 0 34 chr3 34512590 34512737 -125087046 + B1_Mur2 SINE Alu 1 142 -7 3 848 377 309 0 31 chr3 34513826 34513923 -125085860 + B1F1 SINE Alu 12 105 -44 3 848 241 250 90 26 chr3 34513878 34513956 -125085827 + RLTR25A LTR ERVK 537 619 -484 4 848 609 14 0 0 chr3 34513987 34514057 -125085726 + (GA)n Simple_repeat Simple_repeat 2 71 0 4 848 353 270 10 20 chr3 34514370 34514472 -125085311 - PB1D10 SINE Alu -6 111 11 4 848 288 284 10 10 chr3 34514386 34514482 -125085301 - ID_B1 SINE B4 -47 177 82 4 848 334 257 4 68 chr3 34514868 34514973 -125084810 + PB1D10 SINE Alu 6 103 -17 4 848 528 207 8 49 chr3 34514993 34515124 -125084659 - Lx7 LINE L1 -3 7693 7583 4 848 564 339 42 4 chr3 34515132 34515372 -125084411 + B4A SINE B4 32 280 -12 4 848 191 114 0 28 chr3 34515395 34515431 -125084352 + (CATA)n Simple_repeat Simple_repeat 4 38 0 4 848 243 0 0 0 chr3 34515515 34515542 -125084241 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 4 848 423 248 257 0 chr3 34515542 34515651 -125084132 - B1_Mur2 SINE Alu -10 139 3 4 848 1346 59 6 0 chr3 34515700 34515870 -125083913 + B2_Mm1t SINE B2 1 171 -22 5 848 334 250 10 20 chr3 34516026 34516128 -125083655 - PB1D10 SINE Alu -15 102 2 5 848 496 235 212 0 chr3 34516192 34516362 -125083421 - B3 SINE B2 -9 207 2 5 848 246 268 12 12 chr3 34516523 34516606 -125083177 + ID4 SINE ID 1 83 0 5 848 727 207 7 28 chr3 34516621 34516765 -125083018 + B1_Mur4 SINE Alu 2 142 -8 5 848 192 40 0 0 chr3 34516766 34516791 -125082992 + (CAAAA)n Simple_repeat Simple_repeat 4 28 0 5 848 733 225 94 47 chr3 34516839 34517030 -125082753 - B3 SINE B2 0 216 17 5 848 332 213 0 0 chr3 34517552 34517613 -125082170 + RSINE1 SINE B4 44 104 -61 5 848 270 0 0 0 chr3 34517644 34517674 -125082109 + (CA)n Simple_repeat Simple_repeat 1 30 0 5 848 399 41 0 0 chr3 34517674 34517722 -125082061 + (GA)n Simple_repeat Simple_repeat 2 50 0 5 848 339 235 0 0 chr3 34518574 34518672 -125081111 + (TG)n Simple_repeat Simple_repeat 2 99 0 6 848 831 137 57 7 chr3 34519497 34519637 -125080146 - B1_Mus2 SINE Alu 0 147 1 6 848 447 78 0 0 chr3 34519662 34519726 -125080057 + (TA)n Simple_repeat Simple_repeat 1 64 0 6 848 5722 14 0 0 chr3 34519908 34520541 -125079242 - L1Md_A LINE L1 0 6582 5950 6 848 808 30 0 0 chr3 34520541 34520640 -125079143 + L1Md_A LINE L1 5864 5962 -620 6 848 263 291 23 11 chr3 34520893 34520980 -125078803 - L1M5 LINE L1 -368 5826 5739 6 848 292 281 115 9 chr3 34521161 34521387 -125078396 - L1M5 LINE L1 -689 5505 5256 6 848 393 141 0 0 chr3 34522168 34522239 -125077544 + (TG)n Simple_repeat Simple_repeat 2 72 0 6 848 312 301 68 0 chr3 34522378 34522481 -125077302 + PB1 SINE Alu 18 127 0 6 848 840 208 30 0 chr3 34522800 34522968 -125076815 - ID_B1 SINE B4 0 224 52 6 848 1358 46 0 6 chr3 34523386 34523561 -125076222 + (GAAA)n Simple_repeat Simple_repeat 3 176 0 6 848 269 156 508 13 chr3 34523726 34523884 -125075899 - B4 SINE B4 -55 237 3 6 848 496 256 174 0 chr3 34523994 34524166 -125075617 - B3 SINE B2 -14 202 1 7 848 1846 95 0 29 chr3 34524260 34524532 -125075251 - MTB_Mm LTR MaLR -143 264 1 7 848 2486 148 8 8 chr3 34524708 34525102 -125074681 - ORR1B1 LTR MaLR 0 394 1 7 848 468 216 0 0 chr3 34525151 34525225 -125074558 - ID4 SINE ID -2 81 8 7 848 1254 118 41 5 chr3 34525830 34526026 -125073757 + URR1A DNA MER1_type 24 226 0 7 848 292 144 45 0 chr3 34526509 34526563 -125073220 - B1F SINE Alu -66 61 5 7 848 1064 228 35 0 chr3 34526853 34527050 -125072733 - B3 SINE B2 0 216 13 7 848 2023 168 24 35 chr3 34527051 34527427 -125072356 + ORR1D1 LTR MaLR 1 372 -2 7 848 565 281 7 0 chr3 34529926 34530061 -125069722 + ID_B1 SINE B4 50 185 -39 7 848 1198 68 0 0 chr3 34530061 34530209 -125069574 + B1_Mus1 SINE Alu 1 148 0 7 848 482 46 15 0 chr3 34530271 34530336 -125069447 + (GGAA)n Simple_repeat Simple_repeat 3 68 0 8 848 372 222 56 0 chr3 34530436 34530526 -125069257 + PB1D9 SINE Alu 23 117 -3 8 848 668 316 14 9 chr3 34531097 34531311 -125068472 + ID_B1 SINE B4 3 217 -7 8 848 222 328 0 15 chr3 34531539 34531607 -125068176 + PB1 SINE Alu 1 67 -60 8 848 935 212 28 33 chr3 34531636 34531851 -125067932 - B3 SINE B2 0 216 3 8 848 1186 41 7 7 chr3 34532164 34532311 -125067472 + B1_Mm SINE Alu 1 147 0 8 848 242 70 70 0 chr3 34532311 34532354 -125067429 + (CAAAAA)n Simple_repeat Simple_repeat 6 51 0 8 848 1389 90 21 0 chr3 34532417 34532605 -125067178 - B2_Mm1a SINE B2 -1 192 1 8 848 336 272 152 0 chr3 34532611 34532703 -125067080 - B1F SINE Alu -5 115 10 8 848 321 275 12 0 chr3 34532918 34532998 -125066785 - ID4_ SINE ID 0 83 3 8 848 318 269 51 108 chr3 34533034 34533192 -125066591 - B1F2 SINE Alu 0 149 1 9 848 246 220 0 0 chr3 34533636 34533695 -125066088 + (CA)n Simple_repeat Simple_repeat 2 60 0 9 848 209 200 0 0 chr3 34534030 34534065 -125065718 + polypyrimidine Low_complexity Low_complexity 4 38 0 9 848 365 244 181 15 chr3 34534341 34534474 -125065309 - HAL1-3A_ME LINE L1 -420 2438 2284 9 848 814 134 20 0 chr3 34534495 34534644 -125065139 + CT-rich Low_complexity Low_complexity 2 153 0 9 848 396 0 0 0 chr3 34534811 34534855 -125064928 + (TC)n Simple_repeat Simple_repeat 1 44 0 9 848 345 62 0 0 chr3 34534855 34534902 -125064881 + (CA)n Simple_repeat Simple_repeat 1 48 0 9 848 228 322 0 0 chr3 34535337 34535396 -125064387 - ID4_ SINE ID -1 82 24 9 848 676 138 18 0 chr3 34535448 34535557 -125064226 + B1_Mus1 SINE Alu 21 131 -17 9 848 398 236 8 98 chr3 34535557 34535570 -125064213 + MT2B LTR ERVL 184 294 -307 9 848 531 0 0 0 chr3 34535577 34535636 -125064147 + (GA)n Simple_repeat Simple_repeat 2 60 0 1 848 587 152 186 0 chr3 34535730 34535848 -125063935 + B1_Mur1 SINE Alu 1 140 -9 1 848 21 0 0 0 chr3 34536763 34536784 -125062999 + AT_rich Low_complexity Low_complexity 1 21 0 1 848 401 116 14 0 chr3 34537155 34537224 -125062559 + (TC)n Simple_repeat Simple_repeat 2 71 0 1 848 381 22 0 0 chr3 34537660 34537706 -125062077 + (TG)n Simple_repeat Simple_repeat 1 46 0 1 848 180 77 0 0 chr3 34538430 34538456 -125061327 + (TTGG)n Simple_repeat Simple_repeat 2 27 0 1 848 204 40 0 0 chr3 34538465 34538490 -125061293 + (CTTTG)n Simple_repeat Simple_repeat 5 29 0 1 848 274 238 0 16 chr3 34538757 34538821 -125060962 + CT-rich Low_complexity Low_complexity 3 65 0 1 848 27 0 0 0 chr3 34539495 34539522 -125060261 + AT_rich Low_complexity Low_complexity 1 27 0 1 848 330 26 0 0 chr3 34539645 34539684 -125060099 + (CA)n Simple_repeat Simple_repeat 1 39 0 1 848 206 200 0 0 chr3 34541821 34541856 -125057927 + polypyrimidine Low_complexity Low_complexity 1 35 0 1 848 285 98 0 0 chr3 34541997 34542038 -125057745 + (T)n Simple_repeat Simple_repeat 1 41 0 1 848 22 35 0 0 chr3 34543746 34543775 -125056008 + AT_rich Low_complexity Low_complexity 1 29 0 1 848 246 32 0 0 chr3 34544726 34544757 -125055026 + (TTG)n Simple_repeat Simple_repeat 1 31 0 1 848 186 43 0 0 chr3 34547354 34547377 -125052406 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 1 848 24 0 0 0 chr3 34547403 34547427 -125052356 + AT_rich Low_complexity Low_complexity 1 24 0 1 848 31 102 0 0 chr3 34549229 34549337 -125050446 + GC_rich Low_complexity Low_complexity 1 108 0 1 848 204 194 0 0 chr3 34552039 34552075 -125047708 + C-rich Low_complexity Low_complexity 1 36 0 1 848 360 0 0 0 chr3 34552469 34552509 -125047274 + (T)n Simple_repeat Simple_repeat 1 40 0 1 848 231 146 0 0 chr3 34558549 34558604 -125041179 + (A)n Simple_repeat Simple_repeat 1 55 0 1 848 21 57 0 0 chr3 34558704 34558739 -125041044 + AT_rich Low_complexity Low_complexity 1 35 0 1 848 182 167 37 0 chr3 34561405 34561459 -125038324 + T-rich Low_complexity Low_complexity 1 56 0 1 848 189 0 0 0 chr3 34561469 34561490 -125038293 + (A)n Simple_repeat Simple_repeat 1 21 0 1 848 207 0 0 0 chr3 34564418 34564441 -125035342 + (TG)n Simple_repeat Simple_repeat 1 23 0 1 848 405 0 0 0 chr3 34566238 34566283 -125033500 + (CA)n Simple_repeat Simple_repeat 1 45 0 1 848 22 0 0 0 chr3 34566539 34566561 -125033222 + AT_rich Low_complexity Low_complexity 1 22 0 1 848 329 62 21 0 chr3 34567071 34567119 -125032664 + (TC)n Simple_repeat Simple_repeat 2 50 0 1 848 579 117 0 0 chr3 34567805 34567908 -125031875 + (GA)n Simple_repeat Simple_repeat 1 103 0 1 848 731 175 8 16 chr3 34567956 34568084 -125031699 + B1_Mm SINE Alu 2 128 -19 1 848 212 359 19 28 chr3 34568573 34568679 -125031104 + PB1D7 SINE Alu 7 111 -9 1 848 357 282 148 31 chr3 34569047 34569175 -125030608 + ID_B1 SINE B4 23 165 -59 1 848 713 210 35 0 chr3 34569545 34569688 -125030095 - B1_Mus1 SINE Alu 0 148 1 1 848 851 224 30 18 chr3 34570912 34571080 -125028703 + B3A SINE B2 1 170 -28 1 848 288 0 0 0 chr3 34571098 34571130 -125028653 + (CA)n Simple_repeat Simple_repeat 1 32 0 1 848 216 0 0 0 chr3 34571142 34571166 -125028617 + (T)n Simple_repeat Simple_repeat 1 24 0 1 848 513 244 127 38 chr3 34571883 34571953 -125027830 + ID SINE ID 1 84 -140 1 848 226 314 79 79 chr3 34571953 34572067 -125027716 + PB1D10 SINE Alu 1 114 -3 1 848 227 245 0 19 chr3 34572548 34572602 -125027181 + G-rich Low_complexity Low_complexity 2 54 0 1 848 1044 229 29 0 chr3 34572990 34573200 -125026583 - ID_B1 SINE B4 -8 216 1 1 848 300 304 65 7 chr3 34573201 34573340 -125026443 + B1F1 SINE Alu 3 149 0 1 848 477 0 0 0 chr3 34573449 34573502 -125026281 + (GA)n Simple_repeat Simple_repeat 1 53 0 1 848 482 197 242 8 chr3 34574327 34574455 -125025328 + ID_B1 SINE B4 2 159 -65 1 848 257 51 26 0 chr3 34574482 34574521 -125025262 + (TGGGGG)n Simple_repeat Simple_repeat 1 40 0 1 848 425 146 22 0 chr3 34574938 34575027 -125024756 + (CAGA)n Simple_repeat Simple_repeat 2 92 0 1 848 29 0 0 0 chr3 34575040 34575069 -125024714 + AT_rich Low_complexity Low_complexity 1 29 0 1 848 328 320 50 10 chr3 34575084 34575185 -125024598 + PB1D10 SINE Alu 12 116 -1 1 848 915 149 0 7 chr3 34575194 34575329 -125024454 + B1_Mus2 SINE Alu 5 138 -9 1 848 1108 91 0 0 chr3 34575386 34575529 -125024254 + B1_Mus1 SINE Alu 1 143 -5 1 848 207 0 0 0 chr3 34575530 34575553 -125024230 + (CAA)n Simple_repeat Simple_repeat 2 24 0 1 848 570 229 56 24 chr3 34575565 34575690 -125024093 + B1_Mur2 SINE Alu 1 129 -20 1 848 342 0 0 0 chr3 34575703 34575741 -125024042 + (CA)n Simple_repeat Simple_repeat 2 39 0 1 848 343 279 0 0 chr3 34575960 34576039 -125023744 - ID_B1 SINE B4 0 224 146 1 848 267 289 40 0 chr3 34575971 34576047 -125023736 - B1F SINE Alu -11 138 60 1 848 1006 109 7 26 chr3 34576614 34576765 -125023018 + B1_Mus1 SINE Alu 1 148 0 1 848 1061 229 5 9 chr3 34576954 34577170 -125022613 - B3 SINE B2 0 216 2 1 848 225 0 0 0 chr3 34578811 34578836 -125020947 + (CA)n Simple_repeat Simple_repeat 1 25 0 1 848 485 285 16 16 chr3 34579611 34579736 -125020047 + B1_Mur2 SINE Alu 6 130 -19 1 848 1207 38 6 6 chr3 34579736 34579894 -125019889 + (GAA)n Simple_repeat Simple_repeat 1 158 0 1 848 360 148 0 0 chr3 34579895 34579956 -125019827 + (AGGGGG)n Simple_repeat Simple_repeat 2 62 0 1 848 436 312 50 25 chr3 34580089 34580250 -125019533 - RSINE1 SINE B4 0 165 1 1 848 21 36 0 0 chr3 34580343 34580371 -125019412 + AT_rich Low_complexity Low_complexity 1 28 0 1 848 463 288 109 20 chr3 34580371 34580573 -125019210 - ID_B1 SINE B4 -2 222 3 1 848 1052 131 0 6 chr3 34580733 34580909 -125018874 + (GGAA)n Simple_repeat Simple_repeat 3 177 0 1 848 364 96 0 0 chr3 34580913 34580965 -125018818 + B1_Mus2 SINE Alu 2 53 -94 1 848 531 118 118 0 chr3 34580963 34581048 -125018735 - B1_Mus1 SINE Alu -53 95 1 1 848 497 213 0 0 chr3 34581091 34581185 -125018598 - B1_Mur1 SINE Alu -10 139 46 1 848 321 245 0 191 chr3 34581340 34581466 -125018317 - ID_B1 SINE B4 0 224 123 1 848 408 257 162 0 chr3 34581724 34581829 -125017954 + B1_Mur3 SINE Alu 2 123 -26 1 848 427 265 0 93 chr3 34581890 34581907 -125017876 + ID_B1 SINE B4 77 223 -1 1 848 796 138 7 48 chr3 34581907 34582052 -125017731 + B1_Mm SINE Alu 9 147 0 1 848 238 333 12 0 chr3 34582227 34582311 -125017472 - PB1D7 SINE Alu -1 119 35 1 848 519 95 0 0 chr3 34582423 34582497 -125017286 + (CA)n Simple_repeat Simple_repeat 2 75 0 1 848 1160 58 0 0 chr3 34582766 34582904 -125016879 - B1_Mus2 SINE Alu -8 139 2 1 848 1740 171 116 100 chr3 34582904 34583404 -125016379 - Lx9 LINE L1 -12 7632 7125 1 848 270 301 14 0 chr3 34583517 34583590 -125016193 - Lx8 LINE L1 -246 7227 7154 1 848 414 0 0 0 chr3 34583898 34583944 -125015839 + (TTCC)n Simple_repeat Simple_repeat 3 48 0 1 848 407 266 60 45 chr3 34583948 34584082 -125015701 - ID_B1 SINE B4 -9 215 80 1 848 384 221 28 44 chr3 34584801 34584981 -125014802 + (TAGA)n Simple_repeat Simple_repeat 1 177 0 1 848 272 200 13 0 chr3 34585049 34585124 -125014659 + (TAGA)n Simple_repeat Simple_repeat 1 76 0 1 848 605 257 14 7 chr3 34585159 34585304 -125014479 + B1_Mur1 SINE Alu 2 147 -2 1 848 1274 27 0 13 chr3 34585495 34585645 -125014138 - B1_Mus1 SINE Alu 0 148 1 1 848 521 293 41 0 chr3 34585745 34585868 -125013915 - ID_B1 SINE B4 -17 207 80 1 848 198 0 0 0 chr3 34585881 34585903 -125013880 + (TTG)n Simple_repeat Simple_repeat 3 24 0 1 848 249 324 29 0 chr3 34586594 34586662 -125013121 + PB1 SINE Alu 47 116 -11 1 848 567 243 98 38 chr3 34586876 34587060 -125012723 + MTD LTR MaLR 12 206 -213 1 848 1039 159 21 21 chr3 34587065 34587251 -125012532 + B2_Mm2 SINE B2 2 187 -8 1 848 1004 210 48 34 chr3 34587257 34587464 -125012319 + MTD LTR MaLR 201 410 -9 1 848 1216 62 0 0 chr3 34588179 34588324 -125011459 + B1_Mus1 SINE Alu 2 146 -2 1 848 585 215 8 16 chr3 34588336 34588459 -125011324 - B3 SINE B2 -5 211 90 1 848 1210 48 7 0 chr3 34588581 34588726 -125011057 - B1_Mus2 SINE Alu 0 147 2 1 848 465 295 62 31 chr3 34588727 34588888 -125010895 + B3 SINE B2 32 197 -19 1 848 222 211 39 0 chr3 34588889 34588941 -125010842 + (TA)n Simple_repeat Simple_repeat 1 54 0 1 848 324 311 31 70 chr3 34588941 34589069 -125010714 + L1MCa LINE L1 1901 2023 -4485 1 848 1197 68 0 0 chr3 34589082 34589229 -125010554 - B1_Mus2 SINE Alu 0 147 1 1 848 21 57 0 0 chr3 34589241 34589276 -125010507 + AT_rich Low_complexity Low_complexity 1 35 0 1 848 21 0 0 0 chr3 34589343 34589364 -125010419 + AT_rich Low_complexity Low_complexity 1 21 0 1 848 222 42 41 41 chr3 34589378 34589427 -125010356 + (CAAAAA)n Simple_repeat Simple_repeat 5 53 0 1 848 244 48 23 23 chr3 34589583 34589626 -125010157 + (TTTTG)n Simple_repeat Simple_repeat 3 45 0 1 848 518 305 7 54 chr3 34590064 34590213 -125009570 + ID_B1 SINE B4 1 142 -82 1 848 314 246 0 14 chr3 34590160 34590230 -125009553 + PB1D10 SINE Alu 9 77 -40 1 848 396 0 0 0 chr3 34590796 34590840 -125008943 + (TC)n Simple_repeat Simple_repeat 1 44 0 1 848 412 254 50 31 chr3 34591935 34592078 -125007705 + RSINE1 SINE B4 1 145 -20 2 848 240 86 0 0 chr3 34592081 34592116 -125007667 + (CA)n Simple_repeat Simple_repeat 2 36 0 2 848 25 31 0 0 chr3 34592116 34592148 -125007635 + AT_rich Low_complexity Low_complexity 1 32 0 2 848 396 216 57 38 chr3 34592207 34592313 -125007470 - PB1D9 SINE Alu -8 112 5 2 848 405 0 0 0 chr3 34592345 34592390 -125007393 + (TG)n Simple_repeat Simple_repeat 1 45 0 2 848 225 299 154 66 chr3 34592556 34592692 -125007091 - MLT1H LTR MaLR -15 534 387 2 848 280 302 74 19 chr3 34592881 34592989 -125006794 - MLT1H LTR MaLR -328 221 108 2 848 192 125 0 0 chr3 34593201 34593233 -125006550 + (T)n Simple_repeat Simple_repeat 1 32 0 2 848 1218 61 0 0 chr3 34593233 34593381 -125006402 - B1_Mus1 SINE Alu 0 148 1 2 848 2363 209 96 34 chr3 34593382 34593534 -125006249 - Lx9 LINE L1 -1 7643 7474 2 848 285 29 0 0 chr3 34593534 34593568 -125006215 + (CATATA)n Simple_repeat Simple_repeat 3 36 0 2 848 2363 209 96 34 chr3 34593568 34593924 -125005859 - Lx9 LINE L1 -171 7473 7101 2 848 441 0 0 0 chr3 34593924 34593973 -125005810 + (TG)n Simple_repeat Simple_repeat 1 49 0 2 848 2363 209 96 34 chr3 34593973 34594106 -125005677 - Lx9 LINE L1 -544 7100 6961 2 848 1184 48 7 0 chr3 34594628 34594774 -125005009 - B1_Mm SINE Alu 0 147 1 2 848 191 320 0 96 chr3 34594821 34594904 -125004879 - L4 LINE RTE -767 1262 1188 2 848 636 14 0 0 chr3 34595610 34595683 -125004100 + (TTCC)n Simple_repeat Simple_repeat 4 76 0 2 848 515 135 10 0 chr3 34595683 34595779 -125004004 + (TC)n Simple_repeat Simple_repeat 1 97 0 2 848 361 332 124 97 chr3 34595779 34595996 -125003787 - ID_B1 SINE B4 0 224 2 2 848 892 173 207 0 chr3 34596288 34596467 -125003316 + B3 SINE B2 1 216 0 2 848 215 325 24 0 chr3 34596839 34596922 -125002861 - B1F SINE Alu -63 86 2 2 848 807 245 9 50 chr3 34597070 34597230 -125002553 + B3 SINE B2 4 165 -51 2 848 613 0 26 0 chr3 34597230 34597307 -125002476 + (CA)n Simple_repeat Simple_repeat 2 80 0 2 848 807 245 9 50 chr3 34597307 34597365 -125002418 + B3 SINE B2 166 213 -3 2 848 604 290 41 0 chr3 34597434 34597579 -125002204 + RSINE1 SINE B4 14 164 -1 2 848 294 95 0 0 chr3 34597604 34597646 -125002137 + (CA)n Simple_repeat Simple_repeat 1 42 0 2 848 503 222 17 17 chr3 34597772 34597891 -125001892 + PB1D9 SINE Alu 1 119 -1 2 848 225 241 22 67 chr3 34597973 34598062 -125001721 + PB1D10 SINE Alu 33 117 0 2 848 264 227 61 111 chr3 34599121 34599220 -125000563 - B1_Mm SINE Alu -52 95 2 2 848 259 327 9 27 chr3 34599388 34599498 -125000285 - PB1D10 SINE Alu -9 108 1 2 848 218 200 33 16 chr3 34599870 34599931 -124999852 + A-rich Low_complexity Low_complexity 4 65 0 2 848 413 238 37 90 chr3 34600746 34600880 -124998903 + B1F SINE Alu 1 127 -22 2 848 471 198 38 38 chr3 34600819 34600915 -124998868 + ID_B1 SINE B4 112 211 -13 2 848 216 0 0 0 chr3 34600915 34600939 -124998844 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 2 848 239 286 36 0 chr3 34601043 34601099 -124998684 - Lx8 LINE L1 -754 6719 6662 2 848 295 139 11 16 chr3 34601555 34601616 -124998167 - Lx8 LINE L1 -1035 6661 6605 2 848 717 284 144 40 chr3 34601606 34601933 -124997850 + Lx8 LINE L1 6780 7140 -333 2 848 250 365 0 0 chr3 34601973 34602069 -124997714 + RMER15 LTR ERVL 371 466 -109 2 848 355 319 0 40 chr3 34602144 34602268 -124997515 - B1F1 SINE Alu 0 149 31 2 848 2119 142 83 18 chr3 34602376 34602763 -124997020 + MTC LTR MaLR 2 413 -8 2 848 500 234 110 18 chr3 34602769 34602878 -124996905 + ID_B1 SINE B4 99 217 -7 2 849 475 273 54 9 chr3 34603029 34603140 -124996643 + RSINE1 SINE B4 18 133 -32 2 849 383 284 77 96 chr3 34603171 34603369 -124996414 + B3A SINE B2 2 194 -1 2 849 1658 26 0 20 chr3 34603371 34603567 -124996216 + B2_Mm1a SINE B2 2 193 0 2 849 573 263 7 0 chr3 34605260 34605397 -124994386 - B1F2 SINE Alu -5 144 7 2 849 308 291 42 101 chr3 34605397 34605420 -124994363 - B4 SINE B4 -63 194 72 2 849 305 185 61 15 chr3 34605436 34605502 -124994281 + B3A SINE B2 98 166 -32 2 849 1120 41 0 120 chr3 34605562 34605630 -124994153 + B1_Mus1 SINE Alu 2 65 -83 2 849 1359 76 49 0 chr3 34605630 34605814 -124993969 - B2_Mm1a SINE B2 0 193 1 2 849 1120 41 0 120 chr3 34605814 34605912 -124993871 + B1_Mus1 SINE Alu 66 148 0 2 849 219 133 0 0 chr3 34605912 34605957 -124993826 + (CAAA)n Simple_repeat Simple_repeat 4 48 0 2 849 1496 50 17 0 chr3 34606122 34606303 -124993480 - B2_Mm2 SINE B2 -7 188 5 2 849 332 247 0 43 chr3 34606345 34606362 -124993421 - PB1D10 SINE Alu -1 116 101 2 849 189 0 0 0 chr3 34606362 34606383 -124993400 + (TTTTG)n Simple_repeat Simple_repeat 3 23 0 2 849 366 186 0 41 chr3 34606385 34606458 -124993325 - ID_B1 SINE B4 -46 178 109 2 849 983 62 23 0 chr3 34606464 34606592 -124993191 + B1_Mus1 SINE Alu 18 148 0 2 849 677 287 71 67 chr3 34606606 34606830 -124992953 + B4A SINE B4 27 251 -41 2 849 297 0 0 0 chr3 34606851 34606884 -124992899 + (TG)n Simple_repeat Simple_repeat 1 33 0 2 849 342 252 211 32 chr3 34606931 34607054 -124992729 + ID_B1 SINE B4 80 224 0 2 849 449 255 77 45 chr3 34607056 34607212 -124992571 + RSINE1 SINE B4 5 165 0 2 849 460 290 80 8 chr3 34607780 34607905 -124991878 - ID_B1 SINE B4 0 224 91 2 849 305 333 69 38 chr3 34607950 34608109 -124991674 - RSINE1 SINE B4 0 165 2 2 849 285 266 165 0 chr3 34608109 34608186 -124991597 - ID_B1 SINE B4 -133 91 2 2 849 198 0 0 0 chr3 34608374 34608396 -124991387 + (A)n Simple_repeat Simple_repeat 1 22 0 2 849 501 304 20 20 chr3 34609116 34609267 -124990516 - ID_B1 SINE B4 -7 217 67 2 849 829 134 7 15 chr3 34609500 34609636 -124990147 - B1_Mur4 SINE Alu 0 150 16 2 849 539 259 164 0 chr3 34609666 34609855 -124989928 + ID_B1 SINE B4 2 221 -3 2 849 402 348 11 111 chr3 34609858 34610039 -124989744 + RSINE1 SINE B4 3 165 0 2 849 724 217 7 20 chr3 34610081 34610227 -124989556 + B1_Mur2 SINE Alu 1 144 -5 2 849 1205 96 0 6 chr3 34610234 34610413 -124989370 + (GAAA)n Simple_repeat Simple_repeat 3 180 0 2 849 213 121 0 0 chr3 34611064 34611097 -124988686 + (T)n Simple_repeat Simple_repeat 1 33 0 2 849 1172 68 0 0 chr3 34611097 34611243 -124988540 - B1_Mus2 SINE Alu 0 147 2 2 849 762 246 38 19 chr3 34611355 34611566 -124988217 - B3 SINE B2 -1 215 1 2 849 2390 124 113 5 chr3 34611600 34611998 -124987785 - RMER1B Other Other -2 1064 624 2 849 1163 120 27 0 chr3 34611999 34612182 -124987601 + URR1A DNA MER1_type 38 225 -1 2 849 569 310 75 77 chr3 34612284 34612752 -124987031 + RLTR12A LTR ERVK 42 508 -60 2 849 799 156 7 7 chr3 34613067 34613203 -124986580 - B1_Mus2 SINE Alu -10 137 2 2 849 414 214 50 135 chr3 34613092 34613216 -124986567 - MT2B LTR ERVL -337 264 162 2 849 180 0 0 0 chr3 34613216 34613236 -124986547 + (TCC)n Simple_repeat Simple_repeat 3 22 0 2 849 414 214 50 135 chr3 34613236 34613311 -124986472 - MT2B LTR ERVL -440 161 82 2 849 254 43 391 0 chr3 34613315 34613361 -124986422 - RMER1B Other Other -155 911 848 2 849 189 0 0 0 chr3 34613894 34613915 -124985868 + (TTTC)n Simple_repeat Simple_repeat 4 24 0 2 849 479 283 84 25 chr3 34613916 34614119 -124985664 - ID_B1 SINE B4 -8 216 2 2 849 356 239 136 0 chr3 34614437 34614525 -124985258 - HAL1 LINE L1 -1991 516 417 2 849 319 235 100 20 chr3 34614627 34614727 -124985056 + PB1D10 SINE Alu 4 111 -6 2 849 654 235 68 37 chr3 34614736 34614926 -124984857 + B3A SINE B2 3 198 0 2 849 223 326 63 92 chr3 34614982 34615036 -124984747 - B2_Mm2 SINE B2 -56 139 2 2 849 369 284 11 0 chr3 34615036 34615124 -124984659 - ID_B1 SINE B4 -134 90 2 2 849 470 237 43 26 chr3 34615221 34615338 -124984445 - RSINE1 SINE B4 -46 119 1 2 849 279 0 0 0 chr3 34615356 34615387 -124984396 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2 849 3196 67 2 12 chr3 34615397 34615808 -124983975 - MTB_Mm LTR MaLR 0 407 1 2 849 297 250 179 57 chr3 34615855 34615961 -124983822 + PB1D7 SINE Alu 1 119 -1 2 849 207 0 0 0 chr3 34615984 34616007 -124983776 + (CAAA)n Simple_repeat Simple_repeat 4 26 0 2 849 383 224 56 24 chr3 34616170 34616268 -124983515 + PB1D10 SINE Alu 4 112 -8 2 849 453 174 134 2 chr3 34616570 34616678 -124983105 - PB1D10 SINE Alu -91 220 28 2 849 300 255 45 45 chr3 34617193 34617240 -124982543 + L1M4b LINE L1 2180 2224 -5110 2 849 1211 54 0 0 chr3 34617240 34617387 -124982396 + B1_Mus2 SINE Alu 1 147 0 2 849 300 255 45 45 chr3 34617387 34617450 -124982333 + L1M4b LINE L1 2225 2290 -5044 2 849 284 191 11 84 chr3 34617505 34617606 -124982177 + B1F SINE Alu 1 88 -59 2 849 486 243 0 10 chr3 34617835 34617939 -124981844 + RSINE1 SINE B4 3 105 -60 2 849 431 234 75 0 chr3 34618516 34618623 -124981160 + PB1D7 SINE Alu 5 119 -1 2 849 231 304 0 0 chr3 34618638 34618694 -124981089 + G-rich Low_complexity Low_complexity 1 56 0 2 849 221 204 86 69 chr3 34618748 34618764 -124981019 + PB1D7 SINE Alu 60 114 -2 2 849 241 105 53 0 chr3 34618764 34618802 -124980981 + ID_B1 SINE B4 180 219 -5 2 849 349 312 56 7 chr3 34619507 34619649 -124980134 + B1F1 SINE Alu 1 149 0 2 849 232 319 69 0 chr3 34619690 34619762 -124980021 - ID4_ SINE ID -6 77 1 2 849 1448 60 5 16 chr3 34619771 34619957 -124979826 - B2_Mm1a SINE B2 -8 185 2 2 849 833 192 61 11 chr3 34620024 34620297 -124979486 - ORR1D1 LTR MaLR -14 360 12 2 849 240 325 0 61 chr3 34620311 34620372 -124979411 - ID4 SINE ID -3 80 20 3 849 1158 51 0 0 chr3 34620372 34620510 -124979273 + B1_Mus2 SINE Alu 1 138 -9 3 849 195 42 0 0 chr3 34620510 34620534 -124979249 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 3 849 240 325 0 61 chr3 34620534 34620553 -124979230 - ID4 SINE ID -64 19 5 3 849 279 295 91 76 chr3 34620571 34620595 -124979188 + B4 SINE B4 76 172 -120 3 849 493 165 30 40 chr3 34620595 34620696 -124979087 + B1F1 SINE Alu 15 114 -35 3 849 207 0 0 0 chr3 34620710 34620733 -124979050 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 3 849 189 137 130 56 chr3 34620928 34620982 -124978801 + L2a LINE L2 3346 3403 -23 3 849 241 232 129 12 chr3 34621865 34622035 -124977748 + RMER17D2 LTR ERVK 239 428 -381 3 849 516 247 32 15 chr3 34622033 34622165 -124977618 - PB1D7 SINE Alu -1 149 10 3 849 690 276 23 43 chr3 34622291 34622494 -124977289 + B3A SINE B2 2 203 -13 3 849 207 162 0 0 chr3 34622510 34622547 -124977236 + (TATG)n Simple_repeat Simple_repeat 2 38 0 3 849 373 258 10 49 chr3 34622840 34622942 -124976841 + PB1D10 SINE Alu 14 111 -6 3 849 406 235 0 0 chr3 34622980 34623061 -124976722 + ID_B1 SINE B4 90 170 -54 3 849 338 250 73 0 chr3 34623061 34623076 -124976707 + B1F1 SINE Alu 9 111 -38 3 849 511 209 42 0 chr3 34623103 34623242 -124976541 + B1F1 SINE Alu 1 148 -1 3 849 312 154 192 0 chr3 34623966 34624044 -124975739 - ID_B1 SINE B4 0 224 132 3 849 333 0 0 0 chr3 34624072 34624109 -124975674 + (CA)n Simple_repeat Simple_repeat 2 38 0 3 849 441 281 28 0 chr3 34624113 34624234 -124975549 + B1F SINE Alu 5 128 -21 3 849 249 33 0 0 chr3 34624251 34624281 -124975502 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 3 849 676 259 2 4 chr3 34624283 34624461 -124975322 - B3A SINE B2 -27 189 13 3 849 2135 144 14 14 chr3 34624465 34624811 -124974972 - ORR1B1 LTR MaLR -8 386 41 3 849 897 76 21 0 chr3 34624816 34624960 -124974823 + (TCTA)n Simple_repeat Simple_repeat 1 147 0 3 849 300 222 124 57 chr3 34625106 34625189 -124974594 + L1M2 LINE L1 3069 3160 -2983 3 849 300 53 0 0 chr3 34625189 34625227 -124974556 + (CCA)n Simple_repeat Simple_repeat 1 38 0 3 849 300 222 124 57 chr3 34625227 34625248 -124974535 + L1M2 LINE L1 3161 3180 -2963 3 849 462 243 131 0 chr3 34625522 34625629 -124974154 + B1F2 SINE Alu 1 121 -28 3 849 280 213 24 85 chr3 34626816 34626898 -124972885 + RSINE1 SINE B4 5 81 -84 3 849 241 247 58 69 chr3 34626945 34627032 -124972751 - PB1D9 SINE Alu -29 91 6 3 849 229 305 23 47 chr3 34626964 34627051 -124972732 - ID_B1 SINE B4 -68 156 73 3 849 575 227 0 0 chr3 34627088 34627185 -124972598 + B1_Mur2 SINE Alu 1 97 -52 3 849 1623 32 5 0 chr3 34627705 34627894 -124971889 + B2_Mm1t SINE B2 2 191 -2 3 849 626 55 0 0 chr3 34628152 34628225 -124971558 + L1Md_F2 LINE L1 5514 5586 -297 3 849 7954 51 19 2 chr3 34628225 34629204 -124970579 + L1Md_F2 LINE L1 5587 6582 0 3 849 378 208 30 40 chr3 34629407 34629507 -124970276 + PB1D10 SINE Alu 19 117 0 3 849 180 0 0 0 chr3 34629522 34629542 -124970241 + (A)n Simple_repeat Simple_repeat 1 20 0 3 849 310 236 96 66 chr3 34629570 34629706 -124970077 + B1_Mus1 SINE Alu 9 148 0 3 849 500 179 50 33 chr3 34629586 34629707 -124970076 + ID_B1 SINE B4 102 224 0 3 849 259 218 75 25 chr3 34629985 34630065 -124969718 + B4 SINE B4 2 85 -207 3 849 957 96 0 43 chr3 34630199 34630340 -124969443 + B1_Mus1 SINE Alu 2 136 -12 3 849 276 130 0 0 chr3 34630364 34630410 -124969373 + (A)n Simple_repeat Simple_repeat 1 46 0 3 849 360 164 0 0 chr3 34630443 34630510 -124969273 + (CA)n Simple_repeat Simple_repeat 2 68 0 3 849 272 310 105 65 chr3 34630880 34631080 -124968703 - Tigger7 DNA MER2_type -114 2377 2170 3 849 231 108 0 0 chr3 34631169 34631183 -124968600 + (TTTCC)n Simple_repeat Simple_repeat 1 14 0 3 849 896 97 245 7 chr3 34631183 34631338 -124968445 - B2_Mm2 SINE B2 -2 193 2 3 849 231 108 0 0 chr3 34631338 34631360 -124968423 + (TTTCC)n Simple_repeat Simple_repeat 4 25 0 3 849 791 184 29 0 chr3 34631439 34631575 -124968208 + B1_Mur4 SINE Alu 1 140 -10 3 849 336 333 65 30 chr3 34632100 34632301 -124967482 + ID_B1 SINE B4 1 208 -16 3 849 1404 70 16 11 chr3 34632441 34632629 -124967154 + B2_Mm2 SINE B2 1 189 -6 3 849 298 403 8 0 chr3 34632686 34632820 -124966963 - ID_B1 SINE B4 -6 218 84 3 849 465 202 67 0 chr3 34632905 34632994 -124966789 + B1F SINE Alu 41 135 -14 3 849 441 90 0 0 chr3 34632998 34633065 -124966718 + (TG)n Simple_repeat Simple_repeat 2 68 0 3 849 260 265 26 37 chr3 34633087 34633192 -124966591 + ID2 SINE ID 18 119 -33 3 849 413 247 75 0 chr3 34633246 34633339 -124966444 + ID_B1 SINE B4 84 183 -41 3 849 369 0 0 0 chr3 34633343 34633384 -124966399 + (CA)n Simple_repeat Simple_repeat 2 42 0 3 849 387 221 67 0 chr3 34633385 34633489 -124966294 - L1MA4A LINE L1 -368 5935 5825 3 849 1039 76 55 0 chr3 34633494 34633639 -124966144 - B2_Mm2 SINE B2 -4 191 39 3 849 265 277 44 94 chr3 34633642 34633666 -124966117 + YREP_Mm Unknown Unknown 147 277 -1535 3 849 1082 72 0 0 chr3 34633666 34633805 -124965978 - B1_Mus2 SINE Alu 0 147 9 3 849 389 193 15 156 chr3 34633701 34633836 -124965947 - MT2B LTR ERVL -337 264 149 3 849 457 219 52 52 chr3 34633927 34634081 -124965702 - RSINE1 SINE B4 -1 164 11 3 849 304 229 109 79 chr3 34634090 34634344 -124965439 - L1_Mur3 LINE L1 -426 5454 5168 3 849 477 0 0 0 chr3 34634390 34634443 -124965340 + (TC)n Simple_repeat Simple_repeat 2 54 0 3 849 1128 82 0 7 chr3 34634443 34634583 -124965200 - B1_Mus1 SINE Alu -7 141 2 3 849 284 94 0 19 chr3 34634811 34634865 -124964918 + (CAAAA)n Simple_repeat Simple_repeat 2 54 0 3 849 371 256 0 23 chr3 34634889 34634977 -124964806 + ID_B1 SINE B4 137 222 -2 3 849 22 56 0 0 chr3 34634977 34635013 -124964770 + AT_rich Low_complexity Low_complexity 1 36 0 3 849 231 36 0 0 chr3 34635206 34635234 -124964549 + (A)n Simple_repeat Simple_repeat 1 28 0 3 849 587 254 0 17 chr3 34635258 34635378 -124964405 - PB1D7 SINE Alu -2 118 1 3 849 975 73 80 7 chr3 34635397 34635534 -124964249 - B1_Mus1 SINE Alu -1 147 1 3 849 570 257 1 32 chr3 34635552 34635693 -124964090 + B1_Mur1 SINE Alu 1 138 -11 3 849 303 209 35 11 chr3 34635704 34635791 -124963992 + (TG)n Simple_repeat Simple_repeat 2 90 0 3 849 459 196 26 13 chr3 34635795 34635950 -124963833 + (TATATG)n Simple_repeat Simple_repeat 6 162 0 3 849 377 320 61 73 chr3 34635954 34636119 -124963664 - RSINE1 SINE B4 0 165 3 3 849 677 140 212 6 chr3 34636280 34636431 -124963352 + B2_Mm2 SINE B2 1 170 -46 3 849 520 181 35 12 chr3 34636464 34636637 -124963146 + (TG)n Simple_repeat Simple_repeat 1 177 0 3 849 498 261 0 0 chr3 34636656 34636748 -124963035 + B3A SINE B2 2 93 -105 3 849 1208 54 0 13 chr3 34636859 34637008 -124962775 + B1_Mm SINE Alu 1 147 0 3 849 262 330 120 0 chr3 34637091 34637191 -124962592 - PB1D10 SINE Alu -5 112 1 3 849 358 283 65 58 chr3 34637191 34637270 -124962513 - ID SINE ID -143 81 2 3 849 841 159 0 42 chr3 34637437 34637581 -124962202 + B1_Mus2 SINE Alu 1 138 -9 3 849 240 111 0 0 chr3 34637596 34637632 -124962151 + (A)n Simple_repeat Simple_repeat 1 36 0 3 849 818 98 104 15 chr3 34638177 34638311 -124961472 - URR1A DNA MER1_type 0 226 81 3 849 267 325 147 17 chr3 34638351 34638467 -124961316 + RSINE1 SINE B4 15 145 -20 3 849 216 0 0 0 chr3 34638468 34638492 -124961291 + (CA)n Simple_repeat Simple_repeat 2 25 0 3 849 197 196 18 0 chr3 34638513 34638569 -124961214 + (TA)n Simple_repeat Simple_repeat 2 58 0 3 849 1416 306 36 15 chr3 34638973 34639450 -124960333 + Lx7 LINE L1 6826 7312 -384 3 849 209 208 0 0 chr3 34639462 34639510 -124960273 + T-rich Low_complexity Low_complexity 1 48 0 3 849 201 172 31 15 chr3 34639526 34639591 -124960192 + CT-rich Low_complexity Low_complexity 1 66 0 3 849 1182 43 0 0 chr3 34639592 34639731 -124960052 - B1_Mur4 SINE Alu -7 143 5 3 849 3397 55 0 0 chr3 34639900 34640300 -124959483 + MTB LTR MaLR 1 400 0 3 849 298 214 78 66 chr3 34640376 34640475 -124959308 + PB1D9 SINE Alu 17 114 -6 3 849 715 198 32 0 chr3 34640503 34640629 -124959154 + B1_Mur4 SINE Alu 2 131 -19 3 849 723 148 173 36 chr3 34640655 34640823 -124958960 + B2_Mm2 SINE B2 5 195 0 3 849 365 269 37 0 chr3 34640895 34641003 -124958780 - B3 SINE B2 -88 128 17 3 849 423 103 38 38 chr3 34641038 34641195 -124958588 + CT-rich Low_complexity Low_complexity 1 157 0 3 849 281 406 10 0 chr3 34641196 34641297 -124958486 + C-rich Low_complexity Low_complexity 2 103 0 3 849 255 278 81 22 chr3 34641743 34641879 -124957904 - L1MDa LINE L1 -6220 413 270 3 849 1257 70 0 0 chr3 34641991 34642220 -124957563 + (TG)n Simple_repeat Simple_repeat 1 229 0 3 849 775 240 78 20 chr3 34642340 34642544 -124957239 - B3 SINE B2 0 216 1 3 849 498 304 0 0 chr3 34642545 34642657 -124957126 - PB1D7 SINE Alu -3 117 6 3 849 288 302 187 72 chr3 34642547 34642686 -124957097 - ID_B1 SINE B4 -5 219 65 3 849 1378 151 139 45 chr3 34642692 34642847 -124956936 + ORR1D1 LTR MaLR 1 176 -198 3 849 312 27 0 0 chr3 34642847 34642884 -124956899 + (TC)n Simple_repeat Simple_repeat 2 38 0 3 849 1378 151 139 45 chr3 34642884 34643060 -124956723 + ORR1D1 LTR MaLR 177 363 -11 3 849 645 213 177 6 chr3 34643109 34643284 -124956499 - B3 SINE B2 -9 207 3 4 849 400 261 75 0 chr3 34643284 34643402 -124956381 - B1F SINE Alu -1 148 18 4 849 2389 266 66 35 chr3 34643719 34644460 -124955323 - RMER15-int LTR ERVL -3353 1646 883 4 849 304 82 16 16 chr3 34644535 34644597 -124955186 + (TTTTG)n Simple_repeat Simple_repeat 3 64 0 4 849 1271 41 0 0 chr3 34644597 34644744 -124955039 - B1_Mus2 SINE Alu 0 147 1 4 849 492 18 0 0 chr3 34644817 34644874 -124954909 + (CA)n Simple_repeat Simple_repeat 2 58 0 4 849 861 235 27 27 chr3 34644978 34645166 -124954617 + B3 SINE B2 1 188 -28 4 849 432 0 0 0 chr3 34645170 34645218 -124954565 + (TC)n Simple_repeat Simple_repeat 1 48 0 4 849 526 258 71 101 chr3 34645228 34645396 -124954387 - RSINE1 SINE B4 -2 163 1 4 849 726 202 23 0 chr3 34645494 34645623 -124954160 - B1_Mur1 SINE Alu -5 144 13 4 849 543 282 59 50 chr3 34645704 34645924 -124953859 + ID_B1 SINE B4 3 224 0 4 849 24 0 0 0 chr3 34645925 34645949 -124953834 + AT_rich Low_complexity Low_complexity 1 24 0 4 849 572 241 8 8 chr3 34646005 34646122 -124953661 + PB1D10 SINE Alu 1 117 0 4 849 1300 68 97 0 chr3 34648035 34648211 -124951572 - B2_Mm2 SINE B2 0 195 3 4 849 360 294 182 16 chr3 34648222 34648409 -124951374 - ID_B1 SINE B4 -6 218 1 4 849 237 98 0 0 chr3 34648747 34648788 -124950995 + (CAAG)n Simple_repeat Simple_repeat 1 41 0 4 849 232 336 23 101 chr3 34648788 34648907 -124950876 + B4 SINE B4 92 202 -90 4 849 307 220 0 0 chr3 34649291 34649350 -124950433 + L1MC1 LINE L1 6258 6316 -17 4 849 859 231 19 9 chr3 34649363 34649573 -124950210 + B3 SINE B2 5 216 0 4 849 478 233 175 0 chr3 34649810 34649930 -124949853 - B1_Mur1 SINE Alu -8 141 1 4 849 432 277 0 0 chr3 34649988 34650082 -124949701 - PB1D7 SINE Alu -17 103 10 4 849 213 176 78 0 chr3 34650091 34650142 -124949641 + CT-rich Low_complexity Low_complexity 2 56 0 4 849 383 255 49 0 chr3 34650142 34650244 -124949539 - B1F SINE Alu -6 143 37 4 849 498 75 0 0 chr3 34650862 34650929 -124948854 + (TG)n Simple_repeat Simple_repeat 1 67 0 4 849 21 0 0 0 chr3 34651890 34651911 -124947872 + AT_rich Low_complexity Low_complexity 1 21 0 4 849 629 233 175 0 chr3 34651941 34652130 -124947653 - ID_B1 SINE B4 -1 223 2 4 849 389 264 0 52 chr3 34652157 34652273 -124947510 + PB1D9 SINE Alu 2 111 -9 4 849 259 100 0 0 chr3 34653222 34653272 -124946511 - Lx3_Mus LINE L1 0 7009 6960 4 849 46 78 0 0 chr3 34653302 34653404 -124946379 + AT_rich Low_complexity Low_complexity 1 102 0 4 849 401 261 11 0 chr3 34653529 34653621 -124946162 - B1F SINE Alu -52 97 5 4 849 688 283 17 6 chr3 34653754 34653928 -124945855 - B3 SINE B2 -37 179 4 4 849 347 380 0 0 chr3 34654129 34654229 -124945554 - PB1D7 SINE Alu -9 111 12 4 849 460 196 20 40 chr3 34654360 34654461 -124945322 + B1_Mur3 SINE Alu 2 100 -49 4 849 1082 96 0 14 chr3 34654470 34654618 -124945165 - B1_Mus2 SINE Alu 0 147 2 4 849 403 302 57 7 chr3 34654715 34654855 -124944928 + RSINE1 SINE B4 19 165 0 4 849 27 0 0 0 chr3 34654858 34654885 -124944898 + AT_rich Low_complexity Low_complexity 1 27 0 4 849 620 257 28 7 chr3 34654928 34655069 -124944714 + B1F SINE Alu 1 144 -5 4 849 251 264 34 132 chr3 34655125 34655161 -124944622 - MT2B LTR ERVL -300 284 224 4 849 384 242 10 40 chr3 34655161 34655260 -124944523 - B1_Mur2 SINE Alu -52 97 2 4 849 251 264 34 132 chr3 34655260 34655326 -124944457 - MT2B LTR ERVL -300 223 107 4 849 365 123 15 0 chr3 34655985 34656050 -124943733 + (TATG)n Simple_repeat Simple_repeat 4 69 0 4 849 502 211 91 30 chr3 34656121 34656253 -124943530 - B1F1 SINE Alu 0 149 10 4 849 251 260 123 0 chr3 34656353 34656426 -124943357 - PB1D7 SINE Alu -6 114 33 4 849 614 26 0 0 chr3 34656465 34656543 -124943240 - L1Md_T LINE L1 -1 6581 6504 4 849 835 151 79 7 chr3 34657123 34657263 -124942520 - B1_Mur4 SINE Alu 0 150 1 4 849 589 224 13 89 chr3 34657285 34657442 -124942341 - B1_Mur3 SINE Alu 0 149 5 4 849 1180 57 0 0 chr3 34657512 34657653 -124942130 - B1_Mus2 SINE Alu -6 141 1 4 849 275 302 83 45 chr3 34657693 34657849 -124941934 - RSINE1 SINE B4 0 165 4 4 849 473 191 172 16 chr3 34657889 34658017 -124941766 - B1F SINE Alu 0 149 2 4 849 508 234 41 62 chr3 34658167 34658181 -124941602 - B1F1 SINE Alu -2 147 129 4 849 569 172 153 16 chr3 34658181 34658305 -124941478 - B1_Mus1 SINE Alu -4 144 4 4 849 518 224 16 20 chr3 34658305 34658436 -124941347 - B1F SINE Alu -21 128 5 4 849 258 136 0 0 chr3 34658445 34658489 -124941294 + (TTCA)n Simple_repeat Simple_repeat 1 44 0 4 849 238 269 15 0 chr3 34658614 34658681 -124941102 - tRNA-Ala-GCY_ tRNA tRNA -7 68 1 4 849 568 301 7 7 chr3 34659103 34659247 -124940536 - ID_B1 SINE B4 -1 223 80 4 849 326 231 253 0 chr3 34659487 34659578 -124940205 - B1_Mur1 SINE Alu -33 116 3 4 849 1387 163 0 5 chr3 34659591 34659807 -124939976 - B3 SINE B2 -1 215 1 4 849 217 260 0 39 chr3 34659833 34659885 -124939898 + B1F SINE Alu 98 147 -2 4 849 414 258 41 0 chr3 34659965 34660062 -124939721 - ID_B1 SINE B4 -10 214 114 4 849 263 207 64 202 chr3 34660062 34660074 -124939709 - PB1D7 SINE Alu -10 110 17 4 849 759 88 0 0 chr3 34660552 34660665 -124939118 + (TTCC)n Simple_repeat Simple_repeat 3 115 0 4 849 547 242 62 96 chr3 34660665 34660811 -124938972 - B3 SINE B2 -7 188 48 4 849 1035 59 73 0 chr3 34660817 34660953 -124938830 - B1_Mus2 SINE Alu 0 147 2 4 849 294 125 0 0 chr3 34660969 34661017 -124938766 + (A)n Simple_repeat Simple_repeat 1 48 0 4 849 573 161 194 0 chr3 34661128 34661252 -124938531 + B1_Mur4 SINE Alu 2 149 -1 4 849 207 0 0 0 chr3 34661277 34661300 -124938483 + (CAAAC)n Simple_repeat Simple_repeat 3 25 0 4 849 449 180 48 38 chr3 34661477 34661582 -124938201 + PB1D7 SINE Alu 13 118 -2 4 849 255 309 61 20 chr3 34661593 34661692 -124938091 - B1F1 SINE Alu -32 117 15 4 849 608 244 16 48 chr3 34661716 34661873 -124937910 + B3A SINE B2 1 153 -45 4 849 219 69 0 0 chr3 34661873 34661902 -124937881 + (CA)n Simple_repeat Simple_repeat 2 30 0 4 849 608 244 16 48 chr3 34661902 34661933 -124937850 + B3A SINE B2 154 183 -15 4 849 195 42 0 0 chr3 34661940 34661964 -124937819 + (CA)n Simple_repeat Simple_repeat 1 24 0 4 849 219 194 0 61 chr3 34661976 34662042 -124937741 + (CA)n Simple_repeat Simple_repeat 1 62 0 4 849 198 0 0 0 chr3 34662060 34662082 -124937701 + (CA)n Simple_repeat Simple_repeat 1 22 0 4 849 315 0 0 0 chr3 34662084 34662119 -124937664 + (TC)n Simple_repeat Simple_repeat 1 35 0 4 849 417 39 0 0 chr3 34662119 34662169 -124937614 + (CA)n Simple_repeat Simple_repeat 1 51 0 4 849 664 266 7 0 chr3 34662169 34662308 -124937475 + B1_Mur1 SINE Alu 2 141 -8 4 849 46 33 0 0 chr3 34662308 34662368 -124937415 + AT_rich Low_complexity Low_complexity 1 60 0 4 849 1233 21 7 0 chr3 34662423 34662565 -124937218 + B1_Mus2 SINE Alu 5 147 0 4 849 1648 31 0 15 chr3 34662664 34662859 -124936924 - B2_Mm1a SINE B2 0 193 2 4 849 264 148 167 0 chr3 34662958 34663012 -124936771 - B1_Mur2 SINE Alu -1 148 86 4 849 207 0 0 95 chr3 34663016 34663058 -124936725 + (TGGGGG)n Simple_repeat Simple_repeat 2 39 0 4 849 246 319 42 0 chr3 34663080 34663152 -124936631 - B1_Mur3 SINE Alu -74 75 1 4 849 569 253 195 38 chr3 34663154 34663339 -124936444 - ID_B1 SINE B4 -9 215 2 4 849 508 276 30 7 chr3 34663406 34663541 -124936242 - B1_Mus1 SINE Alu 0 148 11 4 849 258 105 0 0 chr3 34663751 34663789 -124935994 + (CAGA)n Simple_repeat Simple_repeat 4 41 0 4 849 496 271 104 43 chr3 34664208 34664439 -124935344 - MTE2b LTR MaLR -117 262 18 4 849 455 360 13 26 chr3 34664438 34664592 -124935191 - ID_B1 SINE B4 -53 171 20 4 849 221 300 17 0 chr3 34664628 34664688 -124935095 + ID4 SINE ID 12 72 -11 4 849 324 48 0 0 chr3 34664690 34664732 -124935051 + (TG)n Simple_repeat Simple_repeat 2 43 0 4 849 612 180 31 16 chr3 34664978 34665107 -124934676 + B1F SINE Alu 29 149 0 4 849 726 225 38 50 chr3 34665180 34665379 -124934404 - B3 SINE B2 -11 184 1 4 849 212 256 162 25 chr3 34665702 34665782 -124934001 + RSINE1 SINE B4 4 94 -71 4 849 890 171 0 27 chr3 34665869 34666019 -124933764 + B1_Mur4 SINE Alu 5 150 0 4 849 468 271 52 17 chr3 34666061 34666209 -124933574 - MTE2a LTR MaLR 0 379 245 4 849 300 154 138 0 chr3 34666277 34666342 -124933441 - MTE2a LTR MaLR -295 84 11 4 849 1047 109 11 6 chr3 34666725 34666900 -124932883 + (GAA)n Simple_repeat Simple_repeat 2 177 0 4 849 247 118 0 0 chr3 34667105 34667139 -124932644 + ID_B1 SINE B4 180 213 -11 4 849 255 125 0 0 chr3 34667139 34667179 -124932604 + (CCA)n Simple_repeat Simple_repeat 3 42 0 4 849 450 0 0 0 chr3 34667191 34667241 -124932542 + (GA)n Simple_repeat Simple_repeat 2 51 0 4 849 362 327 33 28 chr3 34667712 34667885 -124931898 + MIR3 SINE MIR 2 172 -36 4 849 611 279 111 10 chr3 34668317 34668516 -124931267 - ID_B1 SINE B4 -4 220 2 4 849 342 0 0 0 chr3 34668542 34668580 -124931203 + (TG)n Simple_repeat Simple_repeat 2 39 0 4 849 1155 201 136 15 chr3 34668678 34668951 -124930832 - ORR1D2 LTR MaLR 0 370 65 4 849 211 354 15 0 chr3 34668986 34669051 -124930732 + PB1D10 SINE Alu 20 85 -32 4 849 960 122 23 0 chr3 34669110 34669282 -124930501 + (GGGA)n Simple_repeat Simple_repeat 2 177 0 4 849 1473 239 58 56 chr3 34669282 34669761 -124930022 + RLTR28B LTR ERVL 2 481 0 5 849 407 19 19 0 chr3 34669770 34669822 -124929961 + (GA)n Simple_repeat Simple_repeat 1 53 0 5 849 476 211 20 7 chr3 34669822 34669975 -124929808 + (TATG)n Simple_repeat Simple_repeat 3 157 0 5 849 344 230 62 53 chr3 34669975 34670045 -124929738 - PB1D9 SINE Alu -27 122 57 5 849 818 203 96 10 chr3 34670045 34670244 -124929539 - B3 SINE B2 0 216 1 5 849 344 218 75 47 chr3 34670244 34670293 -124929490 - PB1D9 SINE Alu -64 56 11 5 849 215 152 34 0 chr3 34670382 34670441 -124929342 + (TCTCTG)n Simple_repeat Simple_repeat 2 62 0 5 849 484 312 42 31 chr3 34670450 34670493 -124929290 - B3A SINE B2 -4 194 154 5 849 455 70 0 14 chr3 34670493 34670566 -124929217 + (TG)n Simple_repeat Simple_repeat 1 72 0 5 849 484 312 42 31 chr3 34670566 34670714 -124929069 - B3A SINE B2 -45 153 1 5 849 254 125 20 20 chr3 34671063 34671112 -124928671 + L1MC LINE L1 5777 5825 -2057 5 849 220 140 38 57 chr3 34671164 34671217 -124928566 + PB1D9 SINE Alu 46 97 -23 5 849 949 45 10 110 chr3 34671319 34671519 -124928264 + CT-rich Low_complexity Low_complexity 1 180 0 5 849 308 119 0 0 chr3 34671520 34671562 -124928221 + (TCC)n Simple_repeat Simple_repeat 2 43 0 5 849 891 119 0 23 chr3 34671562 34671691 -124928092 - B1_Mus1 SINE Alu -22 126 1 5 849 231 204 0 0 chr3 34671881 34671930 -124927853 + CT-rich Low_complexity Low_complexity 3 51 0 5 849 203 95 0 45 chr3 34671920 34671964 -124927819 + (TCTCTG)n Simple_repeat Simple_repeat 1 42 0 5 849 246 62 0 0 chr3 34671970 34672002 -124927781 + (GGGAGA)n Simple_repeat Simple_repeat 5 36 0 5 849 559 228 16 16 chr3 34672040 34672165 -124927618 - B1F SINE Alu -16 133 9 5 849 1252 68 11 0 chr3 34672209 34672385 -124927398 + (TCCC)n Simple_repeat Simple_repeat 1 178 0 5 849 852 85 0 0 chr3 34672386 34672504 -124927279 + (TTTC)n Simple_repeat Simple_repeat 4 121 0 5 849 344 188 116 0 chr3 34672531 34672600 -124927183 - PB1D10 SINE Alu -23 94 18 5 849 446 285 54 34 chr3 34673630 34673779 -124926004 - RSINE1 SINE B4 -2 163 12 5 849 716 237 0 0 chr3 34673778 34673909 -124925874 - B1_Mur1 SINE Alu -6 143 13 5 849 456 316 12 43 chr3 34673909 34673937 -124925846 - ID_B1 SINE B4 -3 218 65 5 849 578 288 157 0 chr3 34673949 34674140 -124925643 - ID_B1 SINE B4 0 224 4 5 849 302 255 61 43 chr3 34674151 34674266 -124925517 - PB1D7 SINE Alu -1 119 3 5 849 443 190 13 0 chr3 34674733 34674812 -124924971 - ID4 SINE ID -2 81 2 5 849 599 214 25 4 chr3 34674942 34675065 -124924718 - PB1D9 SINE Alu -20 130 10 5 849 347 351 23 35 chr3 34674976 34675147 -124924636 - ID_B1 SINE B4 -48 176 8 5 849 183 255 115 19 chr3 34675420 34675472 -124924311 - MIRm SINE MIR -187 81 25 5 849 834 228 143 0 chr3 34675474 34675663 -124924120 - ID_B1 SINE B4 0 224 9 5 849 267 173 0 55 chr3 34676110 34676165 -124923618 + MT2A LTR ERVL 1 52 -481 5 849 717 63 0 0 chr3 34676178 34676273 -124923510 + (TTTCC)n Simple_repeat Simple_repeat 5 99 0 5 849 291 28 0 0 chr3 34676273 34676309 -124923474 + (TCCC)n Simple_repeat Simple_repeat 4 39 0 5 849 935 87 14 0 chr3 34676320 34676458 -124923325 + (TTTC)n Simple_repeat Simple_repeat 1 140 0 5 849 592 303 110 45 chr3 34676471 34676806 -124922977 + MT2A LTR ERVL 101 457 -76 5 849 1267 80 102 6 chr3 34676838 34676856 -124922927 - B2_Mm2 SINE B2 0 195 178 5 849 279 0 0 0 chr3 34676856 34676887 -124922896 + (TTTA)n Simple_repeat Simple_repeat 3 33 0 5 849 1267 80 102 6 chr3 34676887 34677045 -124922738 - B2_Mm2 SINE B2 -18 177 2 5 849 643 246 40 12 chr3 34677155 34677328 -124922455 - B3A SINE B2 -16 182 5 5 849 489 250 36 36 chr3 34677484 34677621 -124922162 + B1F1 SINE Alu 11 147 -2 5 849 505 223 0 90 chr3 34677498 34677631 -124922152 + ID_B1 SINE B4 104 224 0 5 849 230 304 43 14 chr3 34677650 34677720 -124922063 + ID4_ SINE ID 1 72 -11 5 849 1356 65 20 56 chr3 34677904 34678099 -124921684 + B2_Mm2 SINE B2 1 188 -7 5 849 1066 196 14 24 chr3 34678183 34678392 -124921391 - URR1B DNA MER1_type -18 207 1 5 849 856 146 0 0 chr3 34678870 34679000 -124920783 + B1_Mur4 SINE Alu 1 130 -20 5 849 495 0 0 0 chr3 34679007 34679062 -124920721 + (CA)n Simple_repeat Simple_repeat 2 56 0 5 849 685 211 186 43 chr3 34679136 34679324 -124920459 + B3 SINE B2 1 215 -1 5 849 517 259 72 0 chr3 34679423 34679562 -124920221 - B1_Mur3 SINE Alu 0 149 1 5 849 581 0 28 0 chr3 34679600 34679672 -124920111 - B2_Mm1t SINE B2 -5 188 115 5 849 373 294 125 19 chr3 34679754 34679858 -124919925 + RSINE1 SINE B4 41 155 -10 5 849 381 121 84 6 chr3 34679881 34680047 -124919736 + (TAGA)n Simple_repeat Simple_repeat 2 180 0 5 849 1291 262 74 0 chr3 34680056 34680380 -124919403 - MTEb LTR MaLR -30 349 2 5 849 517 256 33 0 chr3 34680466 34680587 -124919196 + B3A SINE B2 1 125 -73 5 849 1073 243 5 0 chr3 34680707 34680921 -124918862 - ID_B1 SINE B4 -8 216 2 5 849 283 242 41 31 chr3 34682067 34682165 -124917618 + CT-rich Low_complexity Low_complexity 3 101 0 5 849 500 241 80 0 chr3 34682168 34682280 -124917503 - RSINE1 SINE B4 -42 123 3 5 849 308 283 106 38 chr3 34682547 34682679 -124917104 - MLT1G3 LTR MaLR -207 388 248 5 849 225 0 0 0 chr3 34682788 34682813 -124916970 + (CA)n Simple_repeat Simple_repeat 2 26 0 5 849 332 138 0 22 chr3 34682816 34682905 -124916878 + (CAGAGA)n Simple_repeat Simple_repeat 2 88 0 5 849 261 0 0 0 chr3 34683020 34683049 -124916734 + (T)n Simple_repeat Simple_repeat 1 29 0 5 849 935 152 0 0 chr3 34683272 34683410 -124916373 + B1_Mur3 SINE Alu 1 138 -11 5 849 699 62 0 0 chr3 34683410 34683507 -124916276 + (CCAA)n Simple_repeat Simple_repeat 2 98 0 5 849 676 178 52 37 chr3 34684120 34684254 -124915529 - B1_Mur2 SINE Alu 0 149 14 5 849 256 279 85 37 chr3 34684202 34684284 -124915499 - B4 SINE B4 -142 150 65 5 849 221 185 0 15 chr3 34684511 34684577 -124915206 + (TGG)n Simple_repeat Simple_repeat 1 65 0 5 849 832 240 73 20 chr3 34684587 34684791 -124914992 - B3 SINE B2 0 216 2 5 849 230 286 28 28 chr3 34684884 34684956 -124914827 + tRNA-Ala-GCY_ tRNA tRNA 1 72 -3 5 849 855 263 71 20 chr3 34685074 34685349 -124914434 + ORR1E LTR MaLR 3 348 -31 5 849 740 295 198 25 chr3 34685387 34685901 -124913882 - Lx8 LINE L1 -11 7462 6860 5 849 1462 276 28 57 chr3 34686218 34686760 -124913023 - Lx8 LINE L1 -616 6857 6332 5 849 1005 49 21 0 chr3 34687156 34687300 -124912483 + (TCTA)n Simple_repeat Simple_repeat 2 148 0 5 849 866 252 48 0 chr3 34687903 34688109 -124911674 + 7SLRNA srpRNA srpRNA 89 304 -10 5 849 276 30 0 0 chr3 34688110 34688143 -124911640 + (CCAA)n Simple_repeat Simple_repeat 4 36 0 5 849 380 273 0 0 chr3 34688235 34688312 -124911471 + PB1D10 SINE Alu 33 109 -8 5 849 1637 42 0 0 chr3 34688324 34688516 -124911267 + B2_Mm1a SINE B2 2 193 0 5 849 309 51 0 0 chr3 34688772 34688811 -124910972 + (TCC)n Simple_repeat Simple_repeat 1 39 0 5 849 1004 241 5 0 chr3 34688826 34689029 -124910754 - ID_B1 SINE B4 -17 207 4 5 849 1077 193 49 5 chr3 34689077 34689280 -124910503 - B3 SINE B2 0 216 5 5 849 309 214 0 0 chr3 34689310 34689408 -124910375 + (TA)n Simple_repeat Simple_repeat 2 99 0 5 849 438 20 0 0 chr3 34689408 34689459 -124910324 + (CA)n Simple_repeat Simple_repeat 2 52 0 5 849 518 141 26 0 chr3 34689460 34689538 -124910245 - B1_Mur1 SINE Alu -23 126 47 5 849 343 320 48 78 chr3 34689466 34689632 -124910151 - ID_B1 SINE B4 -26 198 38 5 849 526 28 28 0 chr3 34689915 34689987 -124909796 + (TCTA)n Simple_repeat Simple_repeat 3 76 0 5 849 511 222 8 17 chr3 34689989 34690108 -124909675 - B1_Mur4 SINE Alu -20 130 13 5 849 320 317 31 54 chr3 34689994 34690124 -124909659 - ID_B1 SINE B4 -21 203 77 5 849 271 307 0 13 chr3 34690211 34690287 -124909496 - B4A SINE B4 -16 276 202 5 849 1437 91 5 0 chr3 34690318 34690504 -124909279 - B2_Mm1t SINE B2 -5 188 2 5 849 985 101 58 0 chr3 34690593 34690731 -124909052 - B1_Mm SINE Alu -1 146 1 5 849 218 105 26 0 chr3 34690862 34690900 -124908883 + (TAAA)n Simple_repeat Simple_repeat 1 39 0 5 849 3550 193 92 30 chr3 34690941 34691766 -124908017 + RMER1A Other Other 111 859 -171 5 849 438 20 0 0 chr3 34691766 34691817 -124907966 + (TC)n Simple_repeat Simple_repeat 2 52 0 5 849 3550 161 94 43 chr3 34691817 34691981 -124907802 + RMER1A Other Other 860 1027 -3 5 849 490 306 73 30 chr3 34692005 34692170 -124907613 + B4A SINE B4 57 228 -64 5 849 590 296 23 6 chr3 34692173 34692350 -124907433 + B3A SINE B2 3 182 -16 5 849 230 219 0 0 chr3 34692544 34692585 -124907198 - ID4_ SINE ID -41 42 2 5 849 247 193 175 0 chr3 34692642 34692699 -124907084 - ID SINE ID -156 68 2 5 849 281 277 58 8 chr3 34692746 34692866 -124906917 - L1M5 LINE L1 -446 5678 5553 5 849 275 163 41 0 chr3 34693609 34693658 -124906125 - PB1D7 SINE Alu -61 59 9 5 849 572 50 12 0 chr3 34694087 34694167 -124905616 + (TC)n Simple_repeat Simple_repeat 2 82 0 5 849 201 233 0 23 chr3 34694225 34694269 -124905514 + C-rich Low_complexity Low_complexity 5 47 0 5 849 531 254 16 16 chr3 34696619 34696743 -124903040 - B1_Mur1 SINE Alu -18 131 8 5 849 355 317 5 127 chr3 34696649 34696862 -124902921 - MT2B LTR ERVL -347 254 68 5 849 363 60 0 0 chr3 34696957 34697007 -124902776 + (TG)n Simple_repeat Simple_repeat 1 50 0 5 849 270 0 0 0 chr3 34697007 34697036 -124902747 + (GA)n Simple_repeat Simple_repeat 1 30 0 5 849 308 266 13 0 chr3 34697642 34697721 -124902062 - ID4 SINE ID 0 83 4 5 849 609 315 74 49 chr3 34698356 34698640 -124901143 + B4 SINE B4 2 292 0 6 849 468 62 0 0 chr3 34698895 34698959 -124900824 + (TC)n Simple_repeat Simple_repeat 1 64 0 6 849 739 238 12 12 chr3 34698975 34699137 -124900646 - B3 SINE B2 -54 162 1 6 849 255 125 0 0 chr3 34699538 34699578 -124900205 + (T)n Simple_repeat Simple_repeat 1 40 0 6 849 654 104 0 0 chr3 34700186 34700282 -124899501 + (TCC)n Simple_repeat Simple_repeat 1 96 0 6 849 657 0 0 0 chr3 34700389 34700462 -124899321 + (TTCC)n Simple_repeat Simple_repeat 4 76 0 6 849 746 160 84 0 chr3 34700481 34700612 -124899171 - B1_Mur4 SINE Alu -8 142 1 6 849 640 269 8 0 chr3 34700692 34700826 -124898957 + B1F1 SINE Alu 5 139 -10 6 849 234 323 22 73 chr3 34700709 34700829 -124898954 - YREP_Mm Unknown Unknown -1518 294 180 6 849 351 0 0 0 chr3 34700829 34700868 -124898915 + (CAAAA)n Simple_repeat Simple_repeat 4 42 0 6 849 234 323 22 73 chr3 34700868 34700884 -124898899 - YREP_Mm Unknown Unknown -1633 179 165 6 849 572 283 26 36 chr3 34700988 34701182 -124898601 - B3A SINE B2 -6 192 1 6 849 218 105 26 0 chr3 34701788 34701826 -124897957 + (GAAAA)n Simple_repeat Simple_repeat 4 42 0 6 849 873 176 2 0 chr3 34702279 34703075 -124896708 + (CCCTA)n Simple_repeat Simple_repeat 1 797 0 6 849 285 298 36 0 chr3 34703083 34703102 -124896681 - ID_B1 SINE B4 -128 96 10 6 849 335 261 0 0 chr3 34703102 34703167 -124896616 - tRNA-Ala-GCY_ tRNA tRNA -7 68 4 6 849 338 140 0 0 chr3 34704218 34704275 -124895508 + HAL1-3A_ME LINE L1 1962 2018 -840 6 849 626 194 0 11 chr3 34704277 34704459 -124895324 + (CA)n Simple_repeat Simple_repeat 1 180 0 6 849 399 245 5 0 chr3 34704470 34704671 -124895112 + (CA)n Simple_repeat Simple_repeat 1 202 0 6 849 449 236 0 11 chr3 34704694 34704874 -124894909 + (CA)n Simple_repeat Simple_repeat 2 179 0 6 849 558 211 0 0 chr3 34704899 34705079 -124894704 + (CA)n Simple_repeat Simple_repeat 1 180 0 6 849 180 200 0 0 chr3 34705098 34705143 -124894640 + (CA)n Simple_repeat Simple_repeat 2 46 0 6 849 306 330 14 158 chr3 34705286 34705401 -124894382 - Tigger9a DNA Tigger -178 554 462 6 849 523 281 101 0 chr3 34705401 34705600 -124894183 - ID_B1 SINE B4 -2 222 4 6 849 306 330 14 158 chr3 34705600 34705693 -124894090 - Tigger9a DNA Tigger -271 461 376 6 849 1130 56 7 0 chr3 34705852 34705996 -124893787 + B1_Mus2 SINE Alu 2 146 -1 6 849 610 266 8 0 chr3 34706463 34706587 -124893196 - ID_B1 SINE B4 -14 210 86 6 849 616 119 9 9 chr3 34706592 34706702 -124893081 + (TCCC)n Simple_repeat Simple_repeat 3 112 0 6 849 532 209 19 9 chr3 34706705 34706811 -124892972 - PB1D10 SINE Alu -6 111 5 6 849 694 219 14 7 chr3 34707119 34707266 -124892517 + B1F2 SINE Alu 1 148 -1 6 849 285 300 0 0 chr3 34709489 34709559 -124890224 - ID4_ SINE ID -12 71 2 6 849 469 279 66 0 chr3 34709608 34709744 -124890039 + RSINE1 SINE B4 2 146 -19 6 849 336 48 0 0 chr3 34709745 34709787 -124889996 + (CA)n Simple_repeat Simple_repeat 1 42 0 6 849 279 0 0 0 chr3 34709787 34709817 -124889966 + (GA)n Simple_repeat Simple_repeat 2 32 0 6 849 266 234 0 0 chr3 34710070 34710117 -124889666 - L1MC5 LINE L1 -1174 6787 6741 6 849 435 197 115 70 chr3 34710222 34710345 -124889438 - PB1D9 SINE Alu -1 148 7 6 849 225 276 52 95 chr3 34710256 34710372 -124889411 - B4 SINE B4 -109 183 73 6 849 261 0 0 0 chr3 34710458 34710487 -124889296 + (TCTA)n Simple_repeat Simple_repeat 2 30 0 6 849 346 247 0 110 chr3 34710624 34710715 -124889068 - PB1D10 SINE Alu -35 82 2 6 849 4153 34 0 4 chr3 34711173 34711713 -124888070 + MERVL-int LTR ERVL 1224 1902 -3859 6 849 1186 68 54 43 chr3 34711769 34711954 -124887829 - B2_Mm2 SINE B2 -6 189 3 6 849 420 341 15 0 chr3 34712714 34712846 -124886937 + B3A SINE B2 26 159 -39 6 849 189 0 0 0 chr3 34712926 34712947 -124886836 + (GAAAA)n Simple_repeat Simple_repeat 4 24 0 6 849 261 0 0 0 chr3 34713292 34713321 -124886462 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 6 849 923 214 25 20 chr3 34713410 34713606 -124886177 - B3A SINE B2 0 198 2 6 849 245 260 123 0 chr3 34713689 34713762 -124886021 - ID4_ SINE ID 0 83 2 6 849 300 278 184 20 chr3 34713795 34713942 -124885841 - L1MA6 LINE L1 -90 6210 6040 6 849 378 0 0 0 chr3 34715392 34715434 -124884349 + (CA)n Simple_repeat Simple_repeat 2 43 0 6 849 403 295 6 34 chr3 34715460 34715639 -124884144 + (CATA)n Simple_repeat Simple_repeat 3 176 0 6 849 199 237 22 39 chr3 34715672 34715852 -124883931 + (CATATA)n Simple_repeat Simple_repeat 2 178 0 6 849 646 163 412 0 chr3 34715901 34716054 -124883729 - B3 SINE B2 0 216 1 6 849 30 77 0 0 chr3 34716142 34716207 -124883576 + AT_rich Low_complexity Low_complexity 1 65 0 6 849 1433 81 16 0 chr3 34716288 34716474 -124883309 - B2_Mm2 SINE B2 -6 189 1 6 849 439 259 186 49 chr3 34716495 34716678 -124883105 - B3 SINE B2 -6 210 3 6 849 748 236 7 0 chr3 34716699 34716839 -124882944 - B1_Mur1 SINE Alu -6 143 3 6 849 274 254 16 0 chr3 34717019 34717082 -124882701 - ID4_ SINE ID -19 64 1 6 849 533 234 9 9 chr3 34717253 34717361 -124882422 - PB1D9 SINE Alu 0 120 13 6 849 302 290 112 22 chr3 34717275 34717398 -124882385 - ID_B1 SINE B4 -48 176 42 6 849 2603 57 96 0 chr3 34717398 34717752 -124882031 + RLTR10 LTR ERVK 1 388 -2 6 849 381 43 0 0 chr3 34717856 34717903 -124881880 + (TATG)n Simple_repeat Simple_repeat 2 48 0 6 849 266 280 77 39 chr3 34717907 34718011 -124881772 - ID_B1 SINE B4 -33 191 84 6 849 855 166 14 0 chr3 34718024 34718169 -124881614 - B1_Mur3 SINE Alu -1 148 2 6 849 187 308 46 0 chr3 34718927 34718992 -124880791 - MIR SINE MIR -72 190 123 6 849 816 48 0 0 chr3 34718992 34719097 -124880686 + (GA)n Simple_repeat Simple_repeat 1 105 0 6 849 773 293 10 19 chr3 34719233 34719407 -124880376 + B4 SINE B4 36 210 -82 6 849 243 0 0 0 chr3 34719407 34719434 -124880349 + (CA)n Simple_repeat Simple_repeat 2 28 0 6 849 773 293 10 19 chr3 34719434 34719457 -124880326 + B4 SINE B4 211 231 -61 6 849 602 268 135 10 chr3 34719457 34719649 -124880134 + B3 SINE B2 1 216 0 6 849 225 0 0 0 chr3 34719717 34719742 -124880041 + (CA)n Simple_repeat Simple_repeat 2 26 0 6 849 306 0 0 0 chr3 34719743 34719777 -124880006 + (GA)n Simple_repeat Simple_repeat 1 34 0 6 849 631 265 122 0 chr3 34720265 34720461 -124879322 - ID_B1 SINE B4 -4 220 1 6 849 591 183 85 25 chr3 34720951 34721069 -124878714 + B1_Mus2 SINE Alu 22 146 -1 6 849 22 56 0 0 chr3 34721129 34721165 -124878618 + AT_rich Low_complexity Low_complexity 1 36 0 6 849 682 259 330 29 chr3 34721178 34721268 -124878515 - Lx8 LINE L1 -28 7445 7345 6 849 677 252 0 33 chr3 34721268 34721420 -124878363 - B1_Mur1 SINE Alu -1 148 2 6 849 1301 276 220 46 chr3 34721420 34722283 -124877500 - Lx8 LINE L1 -129 7344 6308 6 849 24 53 0 0 chr3 34722398 34722436 -124877347 + AT_rich Low_complexity Low_complexity 1 38 0 6 849 1089 179 14 24 chr3 34722564 34722776 -124877007 - B3 SINE B2 -6 210 1 6 849 432 250 45 97 chr3 34722782 34722937 -124876846 - B1_Mur1 SINE Alu -2 147 1 6 849 246 32 0 0 chr3 34723079 34723110 -124876673 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 6 849 639 300 117 4 chr3 34723594 34723842 -124875941 - B4A SINE B4 -16 276 1 6 849 279 0 0 0 chr3 34724964 34724995 -124874788 + (T)n Simple_repeat Simple_repeat 1 31 0 6 849 304 360 35 0 chr3 34725944 34726030 -124873753 + PB1D10 SINE Alu 1 89 -28 6 849 547 178 29 19 chr3 34726084 34726187 -124873596 - PB1D9 SINE Alu -8 112 9 6 849 229 283 18 92 chr3 34726095 34726204 -124873579 - MT2B LTR ERVL -346 255 155 6 849 1657 189 93 18 chr3 34726790 34727177 -124872606 - MTD LTR MaLR -1 418 3 6 849 428 264 30 10 chr3 34727450 34727572 -124872211 + PB1D10 SINE Alu 3 120 -27 6 849 205 195 0 0 chr3 34728038 34728079 -124871704 + (TA)n Simple_repeat Simple_repeat 1 41 0 6 849 648 293 27 22 chr3 34728120 34728305 -124871478 - ID_B1 SINE B4 -15 209 24 6 849 369 181 69 0 chr3 34728358 34728430 -124871353 - L1_Mur3 LINE L1 -703 5177 5101 6 849 276 247 30 40 chr3 34728708 34728809 -124870974 - L1MB7 LINE L1 -223 5961 5862 6 849 515 273 103 0 chr3 34728814 34729008 -124870775 - B3 SINE B2 -1 215 2 6 849 251 213 0 0 chr3 34729020 34729081 -124870702 + T-rich Low_complexity Low_complexity 1 61 0 6 849 1194 61 0 13 chr3 34729081 34729230 -124870553 - B1_Mm SINE Alu 0 147 1 6 849 2762 31 0 0 chr3 34729233 34729552 -124870231 - L1_Mus1 LINE L1 0 6567 6249 6 849 316 291 233 6 chr3 34729678 34729854 -124869929 - L1M4 LINE L1 -443 5736 5521 6 849 242 128 43 0 chr3 34729888 34729935 -124869848 + (TATATG)n Simple_repeat Simple_repeat 1 49 0 6 849 303 287 107 57 chr3 34729981 34730140 -124869643 - L1M4 LINE L1 -2569 5426 5260 6 849 334 280 122 58 chr3 34730195 34730400 -124869383 - L1M4 LINE L1 -901 5245 5028 6 849 300 213 32 0 chr3 34730963 34731057 -124868726 - Lx5 LINE L1 -3 7047 6951 6 849 802 190 21 68 chr3 34731074 34731266 -124868517 - Lx9 LINE L1 -435 7209 7027 6 849 378 0 0 0 chr3 34731409 34731451 -124868332 + (CA)n Simple_repeat Simple_repeat 1 42 0 6 849 246 234 234 0 chr3 34731452 34731546 -124868237 - L1MA5 LINE L1 -75 6225 6110 6 849 307 230 18 11 chr3 34731846 34731926 -124867857 + B1F SINE Alu 11 92 -25 6 849 636 226 28 35 chr3 34732205 34732347 -124867436 - B1F SINE Alu -5 144 4 6 849 828 220 79 6 chr3 34732384 34732562 -124867221 - B3 SINE B2 -25 191 1 6 850 752 127 18 0 chr3 34734454 34734564 -124865219 - B1_Mur1 SINE Alu -17 132 21 6 850 350 270 100 0 chr3 34735811 34735911 -124863872 + 7SK RNA RNA 12 121 -210 6 850 235 303 90 10 chr3 34735953 34736053 -124863730 - L2b LINE L2 0 3375 3268 6 850 198 67 21 43 chr3 34736305 34736352 -124863431 + (CAAA)n Simple_repeat Simple_repeat 1 46 0 6 850 595 247 131 12 chr3 34737744 34737904 -124861879 - B4 SINE B4 -72 220 42 7 850 310 278 48 9 chr3 34738450 34738558 -124861225 - PB1D10 SINE Alu -5 112 4 7 850 22 0 0 0 chr3 34738576 34738598 -124861185 + AT_rich Low_complexity Low_complexity 1 22 0 7 850 324 0 0 0 chr3 34738861 34738897 -124860886 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 7 850 1028 238 74 77 chr3 34739422 34739786 -124859997 - ORR1D2 LTR MaLR -7 363 1 7 850 186 71 0 0 chr3 34739797 34739825 -124859958 + (A)n Simple_repeat Simple_repeat 1 28 0 7 850 419 279 0 0 chr3 34741806 34741910 -124857873 + PB1D10 SINE Alu 1 104 -13 7 850 638 259 43 119 chr3 34741910 34742114 -124857669 - B3 SINE B2 -19 197 2 7 850 611 259 29 0 chr3 34742144 34742283 -124857500 + B3A SINE B2 2 144 -54 7 850 450 0 0 0 chr3 34742294 34742344 -124857439 + (CA)n Simple_repeat Simple_repeat 2 51 0 7 850 22 0 0 0 chr3 34742351 34742373 -124857410 + AT_rich Low_complexity Low_complexity 1 22 0 7 850 517 285 43 21 chr3 34742498 34742606 -124857177 + B1_Mur1 SINE Alu 2 115 -34 7 850 1192 195 125 27 chr3 34742606 34742943 -124856840 + ORR1D1 LTR MaLR 1 370 -4 7 850 517 285 43 21 chr3 34742943 34742974 -124856809 + B1_Mur1 SINE Alu 116 144 -5 7 850 444 287 9 9 chr3 34743287 34743396 -124856387 - PB1D7 SINE Alu -8 112 4 7 850 290 292 42 0 chr3 34743336 34743408 -124856375 - B4A SINE B4 -144 148 74 7 850 406 169 17 2 chr3 34743584 34743665 -124856118 - ORR1D1 LTR MaLR -8 376 295 7 850 204 200 0 0 chr3 34744119 34744164 -124855619 + (TATG)n Simple_repeat Simple_repeat 2 46 0 7 850 787 132 21 56 chr3 34744165 34744309 -124855474 - B1_Mus1 SINE Alu 0 148 10 7 850 243 355 99 17 chr3 34744324 34744496 -124855287 + Tigger9a DNA Tigger 370 555 -177 7 850 238 183 75 11 chr3 34744514 34744608 -124855175 + (TG)n Simple_repeat Simple_repeat 2 101 0 7 850 366 122 79 7 chr3 34744675 34744815 -124854968 + (TG)n Simple_repeat Simple_repeat 2 151 0 7 850 455 325 30 65 chr3 34744815 34745045 -124854738 - B4A SINE B4 0 292 71 7 850 266 321 54 101 chr3 34745031 34745180 -124854603 + Tigger9a DNA Tigger 550 691 -41 7 850 3066 20 43 0 chr3 34745351 34745703 -124854080 - IAPLTR1_Mm LTR ERVK 0 367 1 7 850 56934 22 15 3 chr3 34745703 34752100 -124847683 - IAPEz-int LTR ERVK 0 6481 8 7 850 3087 17 43 0 chr3 34752100 34752452 -124847331 - IAPLTR1_Mm LTR ERVK 0 367 1 7 850 253 250 81 23 chr3 34752726 34752812 -124846971 - MLT1A LTR MaLR -11 363 273 7 850 828 142 35 0 chr3 34752873 34753042 -124846741 + (TATG)n Simple_repeat Simple_repeat 4 178 0 7 850 496 316 6 0 chr3 34753091 34753249 -124846534 - MLT1A LTR MaLR -213 161 3 7 850 274 296 57 0 chr3 34753267 34753355 -124846428 + MLT1B LTR MaLR 253 345 -45 7 850 264 59 0 0 chr3 34753742 34753776 -124846007 + (CATA)n Simple_repeat Simple_repeat 3 36 0 7 850 333 301 60 34 chr3 34754302 34754419 -124845364 + PB1D9 SINE Alu 1 120 0 7 850 317 280 16 78 chr3 34754982 34755110 -124844673 + LTR16A1 LTR ERVL 247 366 -90 7 850 549 170 0 0 chr3 34755585 34755679 -124844104 + RLTR24 LTR ERV1 2 95 -434 7 850 1167 55 7 0 chr3 34755679 34755824 -124843959 + B1_Mus1 SINE Alu 3 148 0 7 850 593 158 0 17 chr3 34755836 34755952 -124843831 + GA-rich Low_complexity Low_complexity 4 117 0 7 850 863 159 54 97 chr3 34755976 34756325 -124843458 + RLTR24 LTR ERV1 81 529 0 7 850 387 0 0 0 chr3 34756745 34756788 -124842995 + (TAAAA)n Simple_repeat Simple_repeat 3 45 0 7 850 186 73 48 24 chr3 34757345 34757387 -124842396 + (GGAGA)n Simple_repeat Simple_repeat 4 46 0 7 850 207 69 0 0 chr3 34757387 34757416 -124842367 + (TG)n Simple_repeat Simple_repeat 1 29 0 7 850 411 21 0 0 chr3 34757416 34757464 -124842319 + (GA)n Simple_repeat Simple_repeat 1 48 0 7 850 255 293 146 0 chr3 34758212 34758335 -124841448 - B1_Mus1 SINE Alu -7 141 1 7 850 714 188 8 0 chr3 34758384 34758512 -124841271 - B3 SINE B2 -86 130 2 7 850 1618 210 44 22 chr3 34760931 34761195 -124838588 + Lx9 LINE L1 7209 7480 -164 7 850 519 95 0 0 chr3 34761195 34761269 -124838514 + (CA)n Simple_repeat Simple_repeat 2 75 0 7 850 1618 210 44 22 chr3 34761269 34761409 -124838374 + Lx9 LINE L1 7481 7622 -22 7 850 1074 52 0 0 chr3 34761515 34761649 -124838134 + B1_Mus2 SINE Alu 12 145 -2 7 850 222 37 0 0 chr3 34761651 34761678 -124838105 + (A)n Simple_repeat Simple_repeat 1 27 0 7 850 321 68 0 0 chr3 34762625 34762669 -124837114 + (TCC)n Simple_repeat Simple_repeat 2 45 0 7 850 419 276 56 72 chr3 34762891 34763071 -124836712 + RMER15 LTR ERVL 399 575 0 7 850 1735 168 32 112 chr3 34763236 34763480 -124836303 - ORR1D1 LTR MaLR -1 373 162 7 850 456 51 0 0 chr3 34763480 34763539 -124836244 + (GA)n Simple_repeat Simple_repeat 2 60 0 7 850 1735 168 32 112 chr3 34763539 34763697 -124836086 - ORR1D1 LTR MaLR -213 161 3 7 850 251 314 0 0 chr3 34764576 34764646 -124835137 + ID4_ SINE ID 2 71 -12 7 850 494 43 0 14 chr3 34764888 34764958 -124834825 + (CA)n Simple_repeat Simple_repeat 2 70 0 7 850 1279 239 174 14 chr3 34764987 34765348 -124834435 - MTC LTR MaLR 0 421 3 7 850 396 0 0 0 chr3 34765349 34765393 -124834390 + (CA)n Simple_repeat Simple_repeat 1 44 0 7 850 246 234 0 30 chr3 34765397 34765463 -124834320 + (CATATA)n Simple_repeat Simple_repeat 3 66 0 7 850 1287 81 0 0 chr3 34765728 34766000 -124833783 + (TG)n Simple_repeat Simple_repeat 1 272 0 7 850 262 365 0 0 chr3 34767136 34767232 -124832551 + MIRc SINE MIR 52 147 -121 7 850 309 100 0 0 chr3 34770700 34770750 -124829033 + (TC)n Simple_repeat Simple_repeat 2 51 0 7 850 206 175 12 36 chr3 34770749 34770832 -124828951 + (TG)n Simple_repeat Simple_repeat 2 82 0 7 850 404 313 13 39 chr3 34770904 34771060 -124828723 - B4A SINE B4 -140 152 1 7 850 210 71 0 0 chr3 34772457 34772485 -124827298 + (CA)n Simple_repeat Simple_repeat 2 29 0 7 850 369 0 0 0 chr3 34772904 34772945 -124826838 + (CTG)n Simple_repeat Simple_repeat 1 41 0 7 850 226 230 51 52 chr3 34774987 34775095 -124824688 - L2c LINE L2 -71 3316 3183 7 850 181 222 22 22 chr3 34776073 34776119 -124823664 - MIR SINE MIR -63 145 100 7 850 240 213 0 0 chr3 34776418 34776479 -124823304 + CT-rich Low_complexity Low_complexity 3 63 0 7 850 3166 42 5 0 chr3 34776903 34777285 -124822498 - MTA_Mm LTR MaLR 0 396 13 7 850 183 80 0 0 chr3 34777290 34777315 -124822468 + (TG)n Simple_repeat Simple_repeat 2 26 0 7 850 712 198 62 6 chr3 34777668 34777846 -124821937 + B3 SINE B2 17 204 -12 7 850 187 204 23 0 chr3 34778473 34778517 -124821266 - MIR SINE MIR -100 162 118 7 850 332 221 58 0 chr3 34778530 34778616 -124821167 - MTD LTR MaLR -319 100 10 7 850 2251 123 76 5 chr3 34778765 34779133 -124820650 - ORR1B1 LTR MaLR 0 394 1 7 850 214 216 78 0 chr3 34779257 34779308 -124820475 + B1_Mm SINE Alu 81 135 -12 7 850 1007 170 61 10 chr3 34779770 34779966 -124819817 + B3 SINE B2 1 206 -10 7 850 506 205 71 32 chr3 34779981 34780107 -124819676 + B1_Mur1 SINE Alu 3 133 -16 7 850 378 0 0 0 chr3 34780154 34780196 -124819587 + (GA)n Simple_repeat Simple_repeat 2 43 0 7 850 1706 258 103 94 chr3 34780263 34780756 -124819027 - Lx8 LINE L1 -436 7037 6572 7 850 1563 170 91 55 chr3 34780756 34781117 -124818666 - ORR1D1 LTR MaLR 0 374 1 7 850 1706 258 103 94 chr3 34781117 34781349 -124818434 - Lx8 LINE L1 -902 6571 6305 7 850 633 80 0 0 chr3 34783857 34783945 -124815838 + (TCC)n Simple_repeat Simple_repeat 1 88 0 7 850 1638 27 5 0 chr3 34784520 34784707 -124815076 - B2_Mm1a SINE B2 -4 189 2 7 850 251 130 19 0 chr3 34784915 34784969 -124814814 + (TC)n Simple_repeat Simple_repeat 2 56 0 7 850 258 191 0 0 chr3 34785780 34785822 -124813961 + B1_Mus2 SINE Alu 25 66 -81 7 850 269 125 18 0 chr3 34785846 34785902 -124813881 + (GA)n Simple_repeat Simple_repeat 2 58 0 7 850 710 187 71 14 chr3 34786125 34786266 -124813517 - B1_Mur2 SINE Alu 0 149 1 7 850 1003 209 42 0 chr3 34786755 34786970 -124812813 + URR1A DNA MER1_type 1 224 -2 7 850 4682 65 2 0 chr3 34789009 34789593 -124810190 + L1_Mus2 LINE L1 5981 6565 -1 7 850 534 266 29 28 chr3 34790743 34790953 -124808830 + B4 SINE B4 79 291 -1 7 850 206 315 6 0 chr3 34790986 34791164 -124808619 + (CA)n Simple_repeat Simple_repeat 2 180 0 7 850 544 311 11 0 chr3 34791185 34791362 -124808421 + (CA)n Simple_repeat Simple_repeat 2 180 0 7 850 211 296 12 0 chr3 34791376 34791545 -124808238 + (CA)n Simple_repeat Simple_repeat 2 172 0 7 850 411 250 0 0 chr3 34791989 34792105 -124807678 + (TG)n Simple_repeat Simple_repeat 2 117 0 7 850 300 312 80 0 chr3 34794583 34794695 -124805088 - B1F1 SINE Alu -9 140 20 7 850 227 288 0 0 chr3 34795003 34795069 -124804714 - MTD LTR MaLR -36 343 278 7 850 1730 197 3 35 chr3 34795094 34795436 -124804347 - ORR1B2 LTR MaLR -36 331 1 7 850 525 238 73 32 chr3 34795532 34795741 -124804042 - MTD LTR MaLR -183 196 18 7 850 200 59 0 29 chr3 34795838 34795873 -124803910 + (CAAAAA)n Simple_repeat Simple_repeat 2 35 0 7 850 180 0 0 0 chr3 34797616 34797636 -124802147 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 7 850 2552 162 87 35 chr3 34798345 34798451 -124801332 - RLTR20A2 LTR ERVK 0 578 490 7 850 369 0 0 0 chr3 34798451 34798492 -124801291 + (CA)n Simple_repeat Simple_repeat 2 42 0 7 850 2552 162 87 35 chr3 34798492 34798934 -124800849 - RLTR20A2 LTR ERVK -89 489 2 7 850 225 94 0 0 chr3 34798961 34798993 -124800790 + (TC)n Simple_repeat Simple_repeat 1 32 0 7 850 257 341 64 6 chr3 34799130 34799293 -124800490 + L2a LINE L2 3029 3204 -222 7 850 702 251 77 0 chr3 34799337 34799520 -124800263 - ID_B1 SINE B4 -26 198 2 7 850 313 288 176 18 chr3 34801258 34801523 -124798260 - L1MA4A LINE L1 -377 5935 5621 7 850 309 68 0 0 chr3 34804025 34804069 -124795714 + (TC)n Simple_repeat Simple_repeat 1 44 0 7 850 557 125 21 0 chr3 34805593 34805689 -124794094 + (TATG)n Simple_repeat Simple_repeat 1 98 0 7 850 21 36 0 0 chr3 34807105 34807133 -124792650 + AT_rich Low_complexity Low_complexity 1 28 0 7 850 787 269 24 9 chr3 34807133 34807343 -124792440 - B3 SINE B2 -2 214 2 7 850 360 0 0 0 chr3 34808901 34808941 -124790842 + (TTTA)n Simple_repeat Simple_repeat 1 40 0 7 850 1104 274 182 52 chr3 34809424 34809762 -124790021 - L1MC3 LINE L1 -153 7632 7293 8 850 360 0 0 0 chr3 34809762 34809802 -124789981 + (TATAA)n Simple_repeat Simple_repeat 3 42 0 8 850 1104 274 182 52 chr3 34809802 34810063 -124789720 - L1MC3 LINE L1 -493 7292 6970 8 850 2221 139 24 3 chr3 34810063 34810402 -124789381 - ORR1A1 LTR MaLR 0 346 1 8 850 1104 274 182 52 chr3 34810402 34810719 -124789064 - L1MC3 LINE L1 -816 6969 6596 8 850 1121 214 0 9 chr3 34810744 34810961 -124788822 - B3 SINE B2 -1 215 1 8 850 258 299 90 17 chr3 34811147 34811355 -124788428 - L1MC3 LINE L1 -1319 6466 6256 8 850 535 281 111 7 chr3 34811537 34811921 -124787862 - L1MA4A LINE L1 -328 5984 5565 8 850 320 221 44 0 chr3 34812433 34812501 -124787282 - RSINE1 SINE B4 -75 90 20 8 850 361 267 238 11 chr3 34812517 34812706 -124787077 - MTE2b LTR MaLR -146 233 2 8 850 345 24 0 0 chr3 34812857 34812899 -124786884 + (TG)n Simple_repeat Simple_repeat 1 42 0 8 850 502 307 138 16 chr3 34812979 34813297 -124786486 - MLT1F LTR MaLR -3 545 189 8 850 2473 118 105 19 chr3 34813673 34814148 -124785635 + RMER20A LTR ERVK 1 516 0 8 850 1105 252 21 3 chr3 34814451 34814734 -124785049 - B4 SINE B4 -2 290 3 8 850 450 0 0 0 chr3 34814801 34814851 -124784932 + (TCTA)n Simple_repeat Simple_repeat 2 51 0 8 850 198 0 0 0 chr3 34816874 34816896 -124782887 + (CAAAAA)n Simple_repeat Simple_repeat 3 24 0 8 850 373 244 11 17 chr3 34817100 34817279 -124782504 + GA-rich Low_complexity Low_complexity 2 179 0 8 850 646 162 15 0 chr3 34818092 34818228 -124781555 + CT-rich Low_complexity Low_complexity 2 139 0 8 850 401 204 11 22 chr3 34819934 34820024 -124779759 - B3 SINE B2 -127 89 1 8 850 237 320 13 0 chr3 34820457 34820535 -124779248 + PB1D10 SINE Alu 5 83 -34 8 850 246 32 0 0 chr3 34820842 34820873 -124778910 + (T)n Simple_repeat Simple_repeat 1 31 0 8 850 243 0 0 0 chr3 34822024 34822051 -124777732 + (CAAA)n Simple_repeat Simple_repeat 3 29 0 8 850 287 299 11 11 chr3 34823504 34823592 -124776191 + GA-rich Low_complexity Low_complexity 4 91 0 8 850 639 186 287 26 chr3 34824404 34824669 -124775114 - ORR1C2 LTR MaLR -50 334 1 8 850 699 314 71 37 chr3 34825238 34825804 -124773979 - L1M2 LINE L1 -4222 2627 2122 8 850 243 0 0 0 chr3 34826154 34826181 -124773602 + (CAA)n Simple_repeat Simple_repeat 2 28 0 8 850 407 158 70 9 chr3 34826227 34826342 -124773441 - Lx3C LINE L1 -798 6178 6057 8 850 237 328 93 60 chr3 34826539 34826721 -124773062 - Tigger8 DNA MER2_type -36 630 443 8 850 326 208 0 38 chr3 34826841 34826921 -124772862 - ID_B1 SINE B4 -2 222 146 8 850 2848 109 16 7 chr3 34826944 34827370 -124772413 - Lx LINE L1 -7 6647 6218 8 850 492 18 0 0 chr3 34827869 34827926 -124771857 + (CA)n Simple_repeat Simple_repeat 2 58 0 8 850 1981 269 62 106 chr3 34827937 34828754 -124771029 - Lx7 LINE L1 -319 7377 6598 8 850 1886 170 80 23 chr3 34828754 34828926 -124770857 + MTC LTR MaLR 1 182 -239 8 850 982 116 0 20 chr3 34828926 34829075 -124770708 + B1_Mur4 SINE Alu 4 149 -1 8 850 1886 170 80 23 chr3 34829075 34829300 -124770483 + MTC LTR MaLR 183 420 -1 8 850 1981 269 62 106 chr3 34829300 34829400 -124770383 - Lx7 LINE L1 -1099 6597 6500 8 850 580 290 28 52 chr3 34829407 34829618 -124770165 - B4A SINE B4 -85 207 2 8 850 836 229 69 5 chr3 34829682 34829884 -124769899 - B3 SINE B2 -1 215 1 8 850 291 235 101 73 chr3 34830065 34830382 -124769401 - L1MC5 LINE L1 -225 7736 7411 8 850 1905 181 88 8 chr3 34830478 34830863 -124768920 + MTD LTR MaLR 4 419 0 8 850 2984 227 141 70 chr3 34830892 34832027 -124767756 + MTD-int LTR MaLR 28 1243 -15 8 850 1071 222 155 55 chr3 34832027 34832408 -124767375 + MTD LTR MaLR 1 419 0 8 850 342 0 0 0 chr3 34834975 34835013 -124764770 + (TTTTG)n Simple_repeat Simple_repeat 2 39 0 8 850 1199 29 0 0 chr3 34835013 34835150 -124764633 - B1_Mus2 SINE Alu -9 138 2 8 850 396 0 0 0 chr3 34835326 34835370 -124764413 + (TG)n Simple_repeat Simple_repeat 2 45 0 8 850 702 204 185 12 chr3 34836295 34836538 -124763245 - Lx9 LINE L1 -5 7639 7355 8 850 272 284 91 0 chr3 34837326 34837414 -124762369 + Lx8 LINE L1 7063 7158 -315 8 850 3095 50 3 0 chr3 34837398 34837775 -124762008 + L1Md_F3 LINE L1 5209 5586 -297 8 850 8287 37 1 7 chr3 34837775 34838765 -124761018 + L1Md_F3 LINE L1 5587 6570 -14 8 850 382 246 63 107 chr3 34838766 34838925 -124760858 + Lx8 LINE L1 7139 7290 -183 8 850 1701 182 119 2 chr3 34839003 34839380 -124760403 - ORR1D1-int LTR MaLR -909 461 40 8 850 192 40 0 0 chr3 34839380 34839405 -124760378 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 8 850 1701 182 119 2 chr3 34839405 34839440 -124760343 - ORR1D1-int LTR MaLR -1331 39 2 8 850 1425 202 91 15 chr3 34839440 34839782 -124760001 - ORR1D1 LTR MaLR 0 374 7 8 850 1376 287 66 30 chr3 34839792 34840566 -124759217 - Lx9 LINE L1 -685 6959 6135 8 850 1586 258 37 53 chr3 34840586 34841155 -124758628 + Lx9 LINE L1 7085 7644 0 8 850 250 279 14 29 chr3 34841635 34841705 -124758078 + B3 SINE B2 136 204 -12 8 850 195 42 0 0 chr3 34841744 34841768 -124758015 + (A)n Simple_repeat Simple_repeat 1 24 0 8 850 560 291 21 134 chr3 34842139 34842228 -124757555 + Lx8 LINE L1 6103 6194 -1279 8 850 1209 68 0 0 chr3 34842228 34842405 -124757378 + (CA)n Simple_repeat Simple_repeat 2 178 0 8 850 560 291 21 134 chr3 34842405 34842605 -124757178 + Lx8 LINE L1 6195 6359 -1114 8 850 10915 248 56 57 chr3 34842627 34843317 -124756466 - L1_Rod LINE L1 -629 5218 4493 8 850 1780 210 34 50 chr3 34843317 34843698 -124756085 - ORR1C1 LTR MaLR 0 378 4 8 850 10915 248 56 57 chr3 34843698 34843873 -124755910 - L1_Rod LINE L1 -1355 4492 4306 8 850 1107 0 0 0 chr3 34843873 34843996 -124755787 + (TTCCC)n Simple_repeat Simple_repeat 3 125 0 8 850 10915 248 56 57 chr3 34843996 34844098 -124755685 - L1_Rod LINE L1 -1542 4305 4203 8 850 306 0 0 0 chr3 34844098 34844132 -124755651 + (TCTA)n Simple_repeat Simple_repeat 4 37 0 8 850 10915 248 56 57 chr3 34844132 34845019 -124754764 - L1_Rod LINE L1 -1645 4202 3323 8 850 6494 64 11 0 chr3 34845019 34845834 -124753949 - L1_Mus1 LINE L1 0 6567 5744 8 850 10915 248 56 57 chr3 34845834 34846942 -124752841 - L1_Rod LINE L1 -2525 3322 2236 8 850 180 0 0 0 chr3 34846942 34846962 -124752821 + (CAA)n Simple_repeat Simple_repeat 2 21 0 8 850 10915 249 53 50 chr3 34846962 34848201 -124751582 - L1_Rod LINE L1 -3612 2235 1007 8 850 321 26 0 0 chr3 34848558 34848596 -124751187 + (TCCC)n Simple_repeat Simple_repeat 1 38 0 8 850 603 0 0 0 chr3 34849410 34849477 -124750306 + (TCCC)n Simple_repeat Simple_repeat 3 69 0 8 850 875 261 93 30 chr3 34850108 34850377 -124749406 - B4A SINE B4 -2 290 5 8 850 625 266 66 40 chr3 34851362 34851589 -124748194 - B4A SINE B4 -59 233 1 8 850 330 312 39 0 chr3 34851873 34851950 -124747833 - Lx8 LINE L1 -1177 6296 6217 8 850 289 286 48 104 chr3 34852068 34852193 -124747590 + B1F1 SINE Alu 3 120 0 8 850 697 228 12 41 chr3 34852414 34852500 -124747283 + ID SINE ID 3 83 -141 8 850 277 292 8 66 chr3 34852500 34852621 -124747162 + PB1D10 SINE Alu 4 117 0 8 850 359 315 13 20 chr3 34852684 34852833 -124746950 + MLT1A0 LTR MaLR 74 221 -144 8 850 259 294 59 0 chr3 34852898 34852983 -124746800 - MER91C DNA Tip100 -21 119 30 8 850 5049 198 73 24 chr3 34853197 34854349 -124745434 + Lx9 LINE L1 6437 7644 0 8 850 572 309 67 29 chr3 34854532 34854845 -124744938 - L1M2 LINE L1 -601 5690 5366 8 850 243 219 59 33 chr3 34854847 34854959 -124744824 + L1MA9 LINE L1 5877 5995 -305 8 850 238 311 22 0 chr3 34854983 34855073 -124744710 + L1MA5 LINE L1 6209 6300 0 8 850 881 265 100 11 chr3 34855996 34856267 -124743516 + MTE2b LTR MaLR 49 343 -36 8 850 360 180 173 39 chr3 34856583 34856618 -124743165 - MTEa LTR MaLR -11 368 329 8 850 284 0 28 0 chr3 34856618 34856654 -124743129 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 8 850 360 180 173 39 chr3 34856654 34856722 -124743061 - MTEa LTR MaLR -51 328 251 8 850 429 211 53 0 chr3 34856792 34856904 -124742879 - MTEa LTR MaLR -246 133 1 8 850 888 160 65 78 chr3 34858780 34859011 -124740772 - MTD LTR MaLR -147 272 45 8 850 523 261 180 31 chr3 34859010 34859159 -124740624 + B4A SINE B4 50 213 -79 8 850 387 0 0 0 chr3 34859159 34859202 -124740581 + (CA)n Simple_repeat Simple_repeat 2 44 0 8 850 807 115 0 0 chr3 34859202 34859349 -124740434 + (GA)n Simple_repeat Simple_repeat 2 149 0 8 850 523 261 180 31 chr3 34859349 34859392 -124740391 + B4A SINE B4 214 271 -21 8 850 396 40 0 0 chr3 34859396 34859446 -124740337 + (CA)n Simple_repeat Simple_repeat 1 50 0 8 850 746 179 0 27 chr3 34859756 34859905 -124739878 + MTD LTR MaLR 51 195 -224 8 850 624 159 0 0 chr3 34859917 34860055 -124739728 + (TA)n Simple_repeat Simple_repeat 1 138 0 8 850 434 238 67 0 chr3 34861282 34861387 -124738396 - PB1D9 SINE Alu -7 113 2 8 850 259 292 0 40 chr3 34861816 34861916 -124737867 + L3 LINE CR1 2403 2498 -1991 8 850 310 317 24 12 chr3 34862805 34862974 -124736809 + (TATATG)n Simple_repeat Simple_repeat 2 172 0 8 850 771 285 63 35 chr3 34863003 34863287 -124736496 - B4A SINE B4 0 292 1 8 850 452 246 150 9 chr3 34863595 34863808 -124735975 + MLT1D LTR MaLR 254 496 -9 8 850 619 365 59 52 chr3 34864126 34864585 -124735198 + MLT2B3 LTR ERVL 30 491 -63 8 850 260 247 95 23 chr3 34864610 34864724 -124735059 - PB1 SINE Alu -7 120 1 8 851 301 244 21 104 chr3 34865665 34865761 -124734022 - MER5A1 DNA MER1_type -32 134 47 8 851 674 224 149 48 chr3 34865816 34866205 -124733578 + MT2A LTR ERVL 1 469 -132 8 851 256 204 41 0 chr3 34866213 34866262 -124733521 + C-rich Low_complexity Low_complexity 2 52 0 8 851 269 122 0 0 chr3 34866262 34866303 -124733480 + MT2A LTR ERVL 491 531 -2 8 851 213 39 0 0 chr3 34866994 34867020 -124732763 + (GA)n Simple_repeat Simple_repeat 1 26 0 8 851 181 302 11 44 chr3 34867425 34867515 -124732268 - MIRm SINE MIR -117 159 73 8 851 477 300 109 109 chr3 34867684 34868069 -124731714 + MLT1B LTR MaLR 5 389 -1 8 851 826 150 13 26 chr3 34868818 34868969 -124730814 - B1_Mur3 SINE Alu 0 149 1 8 851 250 370 24 26 chr3 34869156 34869307 -124730476 + MIRb SINE MIR 1 157 -111 8 851 7944 90 8 3 chr3 34871692 34873094 -124726689 - L1_Mus3 LINE L1 -1 6637 5230 8 851 849 260 40 5 chr3 34875371 34875572 -124724211 - ID_B1 SINE B4 -7 217 10 8 851 1293 230 118 3 chr3 34879046 34879378 -124720405 + ORR1D2 LTR MaLR 1 370 0 8 851 544 306 44 0 chr3 34879412 34879595 -124720188 - B3A SINE B2 -4 194 4 8 851 654 13 0 0 chr3 34879784 34879859 -124719924 + (TCCCC)n Simple_repeat Simple_repeat 4 78 0 8 851 306 246 0 0 chr3 34880037 34880102 -124719681 - ID_B1 SINE B4 0 224 160 8 851 221 250 159 0 chr3 34880044 34880132 -124719651 - PB1D10 SINE Alu -7 110 9 9 851 335 296 12 0 chr3 34880230 34880311 -124719472 - ID_B1 SINE B4 -128 96 15 8 851 481 330 56 71 chr3 34880864 34881187 -124718596 - ORR1E LTR MaLR -2 357 40 9 851 2920 52 0 0 chr3 34881502 34881848 -124717935 + ORR1A1 LTR MaLR 1 346 0 9 851 12336 62 12 17 chr3 34881848 34882712 -124717071 + ORR1A1-int LTR MaLR 1 871 -921 9 851 5716 57 7 4 chr3 34882712 34883430 -124716353 + L1Md_F2 LINE L1 5863 6582 0 9 851 12336 62 12 17 chr3 34883430 34884366 -124715417 + ORR1A1-int LTR MaLR 872 1792 0 9 851 2824 64 0 0 chr3 34884366 34884708 -124715075 + ORR1A1 LTR MaLR 1 342 -4 9 851 267 226 0 0 chr3 34884857 34884959 -124714824 + GA-rich Low_complexity Low_complexity 1 102 0 9 851 8450 36 3 4 chr3 34885429 34886830 -124712953 - L1Md_F2 LINE L1 -3 6579 5181 9 851 27611 71 2 5 chr3 34886832 34890960 -124708823 + L1Md_A LINE L1 679 4787 -1096 9 851 1176 157 54 22 chr3 34890959 34891181 -124708602 - L1VL1 LINE L1 -6193 229 1 9 851 255 276 256 25 chr3 34891567 34891732 -124708051 - Lx8 LINE L1 -642 6831 6629 9 851 1163 68 0 0 chr3 34891751 34891897 -124707886 - B1_Mm SINE Alu 0 147 2 9 851 23 33 0 0 chr3 34892007 34892037 -124707746 + AT_rich Low_complexity Low_complexity 1 30 0 9 851 297 274 112 8 chr3 34895431 34895556 -124704227 - B4 SINE B4 -128 164 27 9 851 1312 199 49 49 chr3 34898306 34898426 -124701357 - Lx9 LINE L1 0 7644 7528 9 851 216 67 0 0 chr3 34898426 34898456 -124701327 + (TTG)n Simple_repeat Simple_repeat 1 30 0 9 851 1312 199 49 49 chr3 34898456 34898492 -124701291 - Lx9 LINE L1 -117 7527 7495 9 851 1011 63 29 29 chr3 34898492 34898909 -124700874 + (TG)n Simple_repeat Simple_repeat 1 417 0 9 851 1312 198 359 35 chr3 34898909 34899193 -124700590 - Lx9 LINE L1 -150 7494 7101 9 851 313 273 10 20 chr3 34899547 34899648 -124700135 + (CATATA)n Simple_repeat Simple_repeat 4 103 0 9 851 390 21 0 0 chr3 34900272 34900319 -124699464 + (CA)n Simple_repeat Simple_repeat 2 48 0 9 851 1042 245 7 43 chr3 34900788 34900946 -124698837 - ORR1D1 LTR MaLR -73 301 149 9 851 1812 181 72 19 chr3 34900946 34901306 -124698477 - RLTR30 LTR ERV1 0 379 1 9 851 1042 245 7 43 chr3 34901306 34901428 -124698355 - ORR1D1 LTR MaLR -226 148 31 9 851 458 191 0 8 chr3 34901885 34902017 -124697766 + (CA)n Simple_repeat Simple_repeat 1 131 0 9 851 192 200 0 0 chr3 34902028 34902088 -124697695 + (CA)n Simple_repeat Simple_repeat 1 60 0 9 851 320 228 7 0 chr3 34902132 34902277 -124697506 + (CA)n Simple_repeat Simple_repeat 1 146 0 9 851 414 0 0 0 chr3 34902356 34902402 -124697381 + (CA)n Simple_repeat Simple_repeat 1 46 0 9 851 229 256 39 0 chr3 34902750 34902827 -124696956 + MIR SINE MIR 73 153 -123 9 851 246 254 0 0 chr3 34903815 34903882 -124695901 + T-rich Low_complexity Low_complexity 1 67 0 9 851 195 42 0 0 chr3 34904073 34904097 -124695686 + (T)n Simple_repeat Simple_repeat 1 24 0 9 851 864 184 14 0 chr3 34904932 34905079 -124694704 - B1_Mur2 SINE Alu 0 149 1 9 851 523 256 216 6 chr3 34905159 34905340 -124694443 - ID_B1 SINE B4 -3 221 3 9 851 704 301 73 35 chr3 34906190 34906466 -124693317 + L1MC2 LINE L1 5826 6117 -227 9 851 693 114 0 0 chr3 34906466 34906589 -124693194 + (CA)n Simple_repeat Simple_repeat 2 124 0 9 851 704 301 73 35 chr3 34906589 34906684 -124693099 + L1MC2 LINE L1 6118 6211 -133 9 851 186 43 0 0 chr3 34906756 34906779 -124693004 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 9 851 186 103 0 0 chr3 34907314 34907343 -124692440 + (TTAA)n Simple_repeat Simple_repeat 4 32 0 9 851 666 166 74 31 chr3 34907346 34907508 -124692275 - Lx4B LINE L1 -1 7057 6889 9 851 293 268 167 149 chr3 34907636 34907917 -124691866 + B4 SINE B4 2 287 -5 9 851 234 0 0 0 chr3 34907988 34908014 -124691769 + (A)n Simple_repeat Simple_repeat 1 26 0 9 851 321 26 0 0 chr3 34909313 34909351 -124690432 + (TTA)n Simple_repeat Simple_repeat 1 38 0 9 851 808 277 5 37 chr3 34909354 34909568 -124690215 - ID_B1 SINE B4 -15 209 3 9 851 1882 136 87 6 chr3 34913469 34913803 -124685980 - MTC LTR MaLR 0 421 61 9 851 1340 195 156 15 chr3 34913961 34914212 -124685571 + ORR1D1 LTR MaLR 1 299 -75 9 851 3126 61 0 12 chr3 34914212 34914613 -124685170 + MTA_Mm LTR MaLR 1 396 0 9 851 1340 195 156 15 chr3 34914613 34914689 -124685094 + ORR1D1 LTR MaLR 300 374 0 9 851 303 324 40 7 chr3 34914727 34914878 -124684905 + MIR SINE MIR 56 221 -47 9 851 411 243 0 0 chr3 34917099 34917235 -124682548 + (TG)n Simple_repeat Simple_repeat 1 136 0 9 851 246 283 109 0 chr3 34917237 34917329 -124682454 - B4 SINE B4 -1 291 190 9 851 342 115 0 0 chr3 34917761 34917813 -124681970 + (TGAG)n Simple_repeat Simple_repeat 4 55 0 9 851 498 312 101 0 chr3 34918119 34918318 -124681465 + ID_B1 SINE B4 5 223 -1 9 851 742 244 61 20 chr3 34918323 34918520 -124681263 + B3 SINE B2 1 205 -11 9 851 396 320 64 88 chr3 34918857 34919152 -124680631 - B4A SINE B4 -4 288 1 9 851 21 0 0 0 chr3 34919777 34919798 -124679985 + AT_rich Low_complexity Low_complexity 1 21 0 9 851 415 318 76 39 chr3 34919867 34920156 -124679627 + B4 SINE B4 7 278 -14 9 851 982 297 28 17 chr3 34920809 34921097 -124678686 + B4A SINE B4 2 292 0 9 851 245 304 0 0 chr3 34921100 34921156 -124678627 + (CA)n Simple_repeat Simple_repeat 1 56 0 9 851 284 329 29 0 chr3 34921360 34921497 -124678286 + L1MB1 LINE L1 5432 5572 -725 9 851 207 235 0 38 chr3 34921611 34921664 -124678119 + CT-rich Low_complexity Low_complexity 4 54 0 9 851 362 236 127 46 chr3 34921665 34921860 -124677923 + L1MB1 LINE L1 5813 6023 -289 9 851 426 151 0 0 chr3 34922118 34922191 -124677592 + (TA)n Simple_repeat Simple_repeat 2 74 0 9 851 248 175 0 34 chr3 34922450 34922558 -124677225 + G-rich Low_complexity Low_complexity 1 104 0 9 851 245 163 0 0 chr3 34922893 34922936 -124676847 - L1M LINE L1 -822 5302 5260 9 851 375 219 28 9 chr3 34923193 34923299 -124676484 + PB1D10 SINE Alu 9 116 -1 9 851 189 74 0 0 chr3 34923484 34923511 -124676272 + (T)n Simple_repeat Simple_repeat 1 27 0 9 851 718 175 11 17 chr3 34923674 34923854 -124675929 + CT-rich Low_complexity Low_complexity 2 180 0 9 851 280 215 137 10 chr3 34923901 34924001 -124675782 - B1_Mus1 SINE Alu -13 136 13 9 851 498 46 0 0 chr3 34924741 34924806 -124674977 + (CA)n Simple_repeat Simple_repeat 1 65 0 9 851 270 0 0 0 chr3 34924810 34924840 -124674943 + (GA)n Simple_repeat Simple_repeat 2 31 0 9 851 880 245 71 57 chr3 34925516 34925797 -124673986 + B4 SINE B4 8 292 0 9 851 1427 179 45 38 chr3 34925903 34926217 -124673566 - ORR1B2 LTR MaLR 0 367 52 9 851 189 0 0 0 chr3 34926280 34926301 -124673482 + (TTTTG)n Simple_repeat Simple_repeat 4 24 0 9 851 1401 156 106 57 chr3 34926896 34927273 -124672510 + MTD LTR MaLR 24 388 -31 9 851 407 229 136 0 chr3 34927472 34927590 -124672193 - B1_Mur1 SINE Alu -2 147 14 9 851 245 230 17 15 chr3 34927665 34927749 -124672034 - MIRc SINE MIR -48 160 78 9 851 718 113 96 0 chr3 34928696 34928811 -124670972 - Lx LINE L1 -143 6511 6386 9 851 318 378 42 12 chr3 34930519 34930685 -124669098 - MIRb SINE MIR -75 193 23 9 851 310 370 6 12 chr3 34930735 34930902 -124668881 - MER45A DNA Tip100 -12 166 1 9 851 324 0 0 0 chr3 34931832 34931868 -124667915 + (TG)n Simple_repeat Simple_repeat 2 37 0 9 851 365 180 0 50 chr3 34931887 34932027 -124667756 + G-rich Low_complexity Low_complexity 3 135 0 9 851 517 290 58 24 chr3 34932044 34932249 -124667534 - Lx8 LINE L1 -149 7324 7113 9 851 578 284 107 102 chr3 34932556 34932987 -124666796 + Lx8 LINE L1 6895 7327 -146 9 851 842 150 0 15 chr3 34932992 34933258 -124666525 + (CA)n Simple_repeat Simple_repeat 1 261 0 9 851 194 308 99 0 chr3 34934906 34934997 -124664786 + MIR SINE MIR 85 184 -78 9 851 190 290 78 20 chr3 34935252 34935354 -124664429 - MIRm SINE MIR -93 183 76 9 851 240 215 0 0 chr3 34936014 34936046 -124663737 + (CA)n Simple_repeat Simple_repeat 2 33 0 9 851 228 35 0 0 chr3 34936046 34936075 -124663708 + (GA)n Simple_repeat Simple_repeat 2 30 0 9 851 501 214 3 0 chr3 34936075 34936413 -124663370 + (CA)n Simple_repeat Simple_repeat 1 339 0 9 851 1644 134 44 10 chr3 34936715 34937009 -124662774 - ORR1B2 LTR MaLR 0 367 64 9 851 753 149 155 0 chr3 34937048 34937299 -124662484 - MTC LTR MaLR -131 290 1 9 851 734 281 102 19 chr3 34937299 34937614 -124662169 - L1MA5 LINE L1 -387 5913 5573 9 851 240 184 0 0 chr3 34939402 34939451 -124660332 + (TTA)n Simple_repeat Simple_repeat 1 49 0 9 851 7467 114 36 42 chr3 34939451 34940469 -124659314 - Lx2 LINE L1 -6 7002 5867 9 851 1194 61 0 0 chr3 34940469 34940616 -124659167 - B1_Mus1 SINE Alu 0 148 2 9 851 7467 131 14 21 chr3 34940616 34941407 -124658376 - Lx2 LINE L1 -9 5874 5119 9 851 244 345 92 0 chr3 34941536 34941655 -124658128 - MLT1A0 LTR MaLR -15 350 221 9 851 534 246 20 40 chr3 34941692 34941844 -124657939 - ID_B1 SINE B4 -2 222 74 9 851 291 320 69 23 chr3 34942304 34942435 -124657348 - MIR SINE MIR -104 158 22 9 851 29 0 0 0 chr3 34943272 34943301 -124656482 + AT_rich Low_complexity Low_complexity 1 29 0 9 851 2134 262 46 15 chr3 34943303 34943955 -124655828 - Lx5 LINE L1 -5 7045 6455 9 851 3247 185 74 34 chr3 34943949 34944006 -124655777 - Lx5 LINE L1 -728 6322 6272 9 851 4835 152 57 42 chr3 34944006 34944901 -124654882 - RMER13B LTR ERVK 0 908 1 9 851 4471 184 22 23 chr3 34944901 34946080 -124653703 - Lx5 LINE L1 -779 6271 5053 9 851 985 191 29 24 chr3 34946830 34947039 -124652744 + B3 SINE B2 2 211 -5 9 851 271 298 35 23 chr3 34947349 34947432 -124652351 - ID_B1 SINE B4 -48 176 93 9 851 696 260 31 57 chr3 34947432 34947624 -124652159 + MT2A LTR ERVL 1 187 -346 9 851 222 224 23 23 chr3 34947663 34947750 -124652033 + (TA)n Simple_repeat Simple_repeat 1 87 0 9 851 504 280 0 0 chr3 34949463 34949570 -124650213 + PB1D7 SINE Alu 6 112 -8 9 851 828 284 110 13 chr3 34950661 34950978 -124648805 + MTEa LTR MaLR 3 350 -29 9 851 804 145 0 0 chr3 34951417 34951486 -124648297 + (TCC)n Simple_repeat Simple_repeat 2 70 0 9 851 884 59 8 0 chr3 34951486 34951605 -124648178 + (TTCTC)n Simple_repeat Simple_repeat 2 121 0 9 851 804 145 0 0 chr3 34951605 34951673 -124648110 + (TCC)n Simple_repeat Simple_repeat 3 70 0 9 851 398 268 105 19 chr3 34952118 34952224 -124647559 - PB1D10 SINE Alu -2 125 10 1 851 760 226 9 67 chr3 34952430 34952653 -124647130 - B3 SINE B2 -6 210 1 1 851 23 0 0 0 chr3 34953273 34953296 -124646487 + AT_rich Low_complexity Low_complexity 1 23 0 1 851 620 256 106 39 chr3 34953751 34953958 -124645825 - ID_B1 SINE B4 0 224 4 1 851 801 149 43 0 chr3 34954114 34954255 -124645528 + MTB_Mm LTR MaLR 261 407 0 1 851 4848 56 0 29 chr3 34957360 34957987 -124641796 - L1Md_F2 LINE L1 0 6582 5974 1 851 398 19 0 0 chr3 34957987 34958039 -124641744 - B1_Mus1 SINE Alu -95 53 2 1 851 22 35 0 0 chr3 34958260 34958289 -124641494 + AT_rich Low_complexity Low_complexity 1 29 0 1 851 234 300 16 48 chr3 34958734 34958860 -124640923 - Lx7 LINE L1 -16 7680 7559 1 851 342 0 0 0 chr3 34958896 34958934 -124640849 + (CA)n Simple_repeat Simple_repeat 2 39 0 1 851 333 0 0 0 chr3 34960151 34960188 -124639595 + (TG)n Simple_repeat Simple_repeat 1 37 0 1 851 1309 215 111 12 chr3 34960605 34960949 -124638834 - MTEa LTR MaLR 0 379 2 1 851 259 250 15 45 chr3 34961103 34961170 -124638613 - RLTR17 LTR ERVK 0 692 628 1 851 2121 160 26 40 chr3 34961285 34961708 -124638075 - RLTR31A_Mm LTR ERVK -165 419 3 1 851 42 0 0 0 chr3 34962149 34962191 -124637592 + AT_rich Low_complexity Low_complexity 1 42 0 1 851 192 77 0 0 chr3 34962409 34962435 -124637348 + (TTTA)n Simple_repeat Simple_repeat 4 29 0 1 851 598 215 37 7 chr3 34962436 34962572 -124637211 - RSINE1 SINE B4 -22 143 4 1 851 524 318 134 19 chr3 34962576 34962986 -124636797 - L1MC3 LINE L1 -2 7783 7327 1 851 2817 39 3 0 chr3 34963100 34963433 -124636350 + L1Md_F2 LINE L1 5253 5586 -297 1 851 8041 45 21 3 chr3 34963433 34964411 -124635372 + L1Md_F2 LINE L1 5587 6582 0 1 851 486 0 0 0 chr3 34964684 34964738 -124635045 + (TA)n Simple_repeat Simple_repeat 1 54 0 1 851 21 57 0 0 chr3 34964998 34965033 -124634750 + AT_rich Low_complexity Low_complexity 1 35 0 1 851 188 242 14 43 chr3 34966855 34966924 -124632859 - MIR SINE MIR -132 130 64 1 851 275 286 122 0 chr3 34967001 34967099 -124632684 - PB1D9 SINE Alu -10 110 1 1 851 229 184 20 0 chr3 34967743 34967792 -124631991 + MIR SINE MIR 80 129 -133 1 851 314 315 80 80 chr3 34967803 34968017 -124631766 - MLT1A LTR MaLR -1 373 162 1 851 608 38 13 0 chr3 34968017 34968096 -124631687 + (TAGA)n Simple_repeat Simple_repeat 2 81 0 1 851 314 315 80 80 chr3 34968096 34968254 -124631529 - MLT1A LTR MaLR -213 161 1 1 851 1285 166 0 13 chr3 34968982 34969208 -124630575 + URR1B DNA MER1_type 3 225 0 1 851 492 220 72 77 chr3 34969208 34969240 -124630543 - CYRA11_Mm Unknown Y-chromosome -447 170 140 1 851 201 195 0 24 chr3 34969951 34969993 -124629790 + (TATG)n Simple_repeat Simple_repeat 3 43 0 1 851 290 337 40 0 chr3 34970436 34970537 -124629246 + PB1D10 SINE Alu 1 105 -12 1 851 759 192 0 0 chr3 34971144 34971382 -124628401 + (CCA)n Simple_repeat Simple_repeat 1 238 0 1 851 207 318 34 31 chr3 34972052 34972198 -124627585 - MIRm SINE MIR -102 174 24 1 851 345 174 0 0 chr3 34973159 34973228 -124626555 + C-rich Low_complexity Low_complexity 5 73 0 1 851 992 32 0 8 chr3 34973228 34973353 -124626430 + (TTTCC)n Simple_repeat Simple_repeat 3 126 0 1 851 23 0 0 0 chr3 34973372 34973395 -124626388 + AT_rich Low_complexity Low_complexity 1 23 0 1 851 387 0 0 0 chr3 34973583 34973626 -124626157 + (TTTA)n Simple_repeat Simple_repeat 3 45 0 1 851 1250 50 0 0 chr3 34973626 34973786 -124625997 - B2_Mm1a SINE B2 -33 160 1 1 851 447 266 50 30 chr3 34974519 34974717 -124625066 - L1MD3 LINE L1 -140 7855 7654 1 851 283 210 0 16 chr3 34974925 34974988 -124624795 - L1MD3 LINE L1 -330 7665 7604 1 851 761 164 7 28 chr3 34975314 34975458 -124624325 - B1_Mur3 SINE Alu 0 149 9 1 851 301 338 65 31 chr3 34975643 34975872 -124623911 - MLT1D LTR MaLR -22 483 247 1 851 180 0 0 0 chr3 34977039 34977059 -124622724 + (T)n Simple_repeat Simple_repeat 1 20 0 1 851 444 82 0 0 chr3 34977270 34977331 -124622452 + (A)n Simple_repeat Simple_repeat 1 61 0 1 851 465 229 0 0 chr3 34979538 34979669 -124620114 + (CAAG)n Simple_repeat Simple_repeat 1 131 0 1 851 235 280 0 0 chr3 34982441 34982491 -124617292 + (TG)n Simple_repeat Simple_repeat 2 51 0 1 851 288 309 43 0 chr3 34982511 34982605 -124617178 - Lx8 LINE L1 -178 7295 7198 1 851 234 269 35 35 chr3 34984077 34984105 -124615678 + (CATA)n Simple_repeat Simple_repeat 1 30 0 1 851 525 32 0 0 chr3 34984105 34984168 -124615615 + (CA)n Simple_repeat Simple_repeat 1 63 0 1 851 234 269 35 35 chr3 34984168 34984285 -124615498 + (CATA)n Simple_repeat Simple_repeat 3 118 0 1 851 201 39 0 0 chr3 34984285 34984311 -124615472 + (CA)n Simple_repeat Simple_repeat 1 26 0 1 851 234 269 35 35 chr3 34984311 34984337 -124615446 + (CATA)n Simple_repeat Simple_repeat 3 28 0 1 851 459 15 44 0 chr3 34986520 34986588 -124613195 + (TG)n Simple_repeat Simple_repeat 1 71 0 1 851 342 0 0 0 chr3 34988233 34988271 -124611512 + (TG)n Simple_repeat Simple_repeat 2 39 0 1 851 1486 252 95 48 chr3 34992442 34993000 -124606783 - RCHARR1 DNA MER1_type -388 586 3 1 851 261 232 58 0 chr3 34993609 34993678 -124606105 + MIR SINE MIR 112 184 -78 1 851 279 260 146 0 chr3 34994269 34994365 -124605418 - PB1D9 SINE Alu -10 110 1 1 851 1110 82 7 0 chr3 34994525 34994671 -124605112 + B1_Mus2 SINE Alu 1 147 0 1 851 762 11 0 0 chr3 34994683 34994770 -124605013 + (GAAA)n Simple_repeat Simple_repeat 2 88 0 1 851 513 238 85 106 chr3 34995269 34995457 -124604326 - B3 SINE B2 -10 185 2 1 851 304 244 0 58 chr3 34995751 34995838 -124603945 + PB1D10 SINE Alu 3 84 -33 1 851 21 36 0 0 chr3 34995986 34996014 -124603769 + GC_rich Low_complexity Low_complexity 1 28 0 1 106 27 29 0 0 chr3 34996197 34996231 -124603552 + AT_rich Low_complexity Low_complexity 1 34 0 1 852 324 152 0 0 chr3 34996629 34996695 -124603088 + (TGAA)n Simple_repeat Simple_repeat 1 66 0 1 852 418 299 113 28 chr3 34997215 34997428 -124602355 + B4A SINE B4 30 260 -32 1 852 345 100 0 0 chr3 34997442 34997492 -124602291 + (CA)n Simple_repeat Simple_repeat 2 51 0 1 852 251 243 24 43 chr3 34998571 34998788 -124600995 + CT-rich Low_complexity Low_complexity 1 212 0 1 852 203 61 0 29 chr3 34998792 34998826 -124600957 + (TTTA)n Simple_repeat Simple_repeat 4 36 0 1 852 261 0 0 0 chr3 35000741 35000770 -124599013 + (TGG)n Simple_repeat Simple_repeat 2 30 0 1 852 1035 246 18 14 chr3 35001413 35001694 -124598089 + MER121 Unknown Unknown 131 412 0 2 852 198 67 43 22 chr3 35002436 35002482 -124597301 + (TTG)n Simple_repeat Simple_repeat 2 48 0 3 852 324 0 0 0 chr3 35003106 35003142 -124596641 + (TG)n Simple_repeat Simple_repeat 2 37 0 4 852 276 297 124 82 chr3 35005775 35006057 -124593726 - MTE2a LTR MaLR -84 295 2 5 852 526 206 0 0 chr3 35006223 35006325 -124593458 - B1F2 SINE Alu -6 143 42 6 852 571 212 0 14 chr3 35006536 35006684 -124593099 + (TA)n Simple_repeat Simple_repeat 1 146 0 7 852 327 253 0 24 chr3 35007159 35007244 -124592539 + Lx8 LINE L1 7162 7244 -229 8 852 548 262 137 16 chr3 35010387 35010569 -124589214 - ID_B1 SINE B4 0 224 21 9 852 756 190 31 0 chr3 35014098 35014261 -124585522 + L1MA6 LINE L1 5732 5899 -401 1 852 10534 66 6 35 chr3 35014654 35016731 -124583052 + Lx3_Mus LINE L1 4976 6989 -20 1 852 188 34 0 33 chr3 35016731 35016761 -124583022 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 1 852 334 286 86 50 chr3 35016933 35017073 -124582710 + MIR SINE MIR 104 248 -14 1 852 207 292 0 0 chr3 35017091 35017156 -124582627 + L4 LINE RTE 1317 1381 -648 1 852 383 301 67 6 chr3 35018710 35018874 -124580909 - L1ME2 LINE L1 -283 5881 5708 1 852 186 412 48 48 chr3 35020266 35020434 -124579349 + MIR3 SINE MIR 33 200 -8 1 852 21 0 0 0 chr3 35021013 35021034 -124578749 + AT_rich Low_complexity Low_complexity 1 21 0 1 852 234 0 0 0 chr3 35022437 35022463 -124577320 + (CAGCT)n Simple_repeat Simple_repeat 1 26 0 1 852 189 390 53 0 chr3 35023209 35023304 -124576479 - MIRb SINE MIR -74 194 95 1 852 38880 30 1 0 chr3 35023516 35030391 -124569392 - L1Md_T LINE L1 0 6585 1 2 852 668 258 5 38 chr3 35031089 35031274 -124568509 - B3A SINE B2 -18 180 2 2 852 483 246 0 26 chr3 35032075 35032192 -124567591 - ID_B1 SINE B4 -1 223 110 2 852 372 43 0 0 chr3 35033080 35033126 -124566657 + (TCTG)n Simple_repeat Simple_repeat 1 46 0 2 852 474 33 0 0 chr3 35033127 35033187 -124566596 + (TC)n Simple_repeat Simple_repeat 2 61 0 2 852 452 281 42 21 chr3 35033421 35033563 -124566220 - RMER15 LTR ERVL -155 420 276 2 852 996 86 0 0 chr3 35033790 35033930 -124565853 + (GGAA)n Simple_repeat Simple_repeat 1 140 0 2 852 210 319 77 0 chr3 35034405 35034496 -124565287 + PB1D7 SINE Alu 1 98 -22 2 852 214 133 0 0 chr3 35034600 35034630 -124565153 + (GGGA)n Simple_repeat Simple_repeat 4 33 0 2 852 712 208 0 17 chr3 35034630 35034672 -124565111 + polypurine Low_complexity Low_complexity 1 39 0 2 852 1098 94 0 32 chr3 35034672 35034858 -124564925 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 3 852 949 173 3 14 chr3 35034858 35035184 -124564599 + GA-rich Low_complexity Low_complexity 1 322 0 3 852 420 126 0 0 chr3 35035216 35035303 -124564480 + (CAGG)n Simple_repeat Simple_repeat 2 88 0 3 852 2125 73 21 65 chr3 35035734 35036071 -124563712 - ORR1A2 LTR MaLR 0 327 6 3 852 261 0 0 0 chr3 35036248 35036277 -124563506 + (A)n Simple_repeat Simple_repeat 1 29 0 3 852 281 353 30 0 chr3 35036403 35036536 -124563247 - MER117 DNA MER1_type -42 155 19 3 852 665 289 57 49 chr3 35038108 35038355 -124561428 + B4 SINE B4 2 250 -42 3 852 184 306 149 23 chr3 35038743 35038830 -124560953 + MER5A DNA MER1_type 45 142 -47 3 852 255 297 131 70 chr3 35039165 35039364 -124560419 + MLT1K LTR MaLR 324 534 -61 3 852 257 253 37 25 chr3 35041349 35041430 -124558353 - ID4 SINE ID 0 83 2 3 852 184 318 0 15 chr3 35041876 35041943 -124557840 - L2b LINE L2 -12 3363 3298 4 852 656 214 6 0 chr3 35042095 35042263 -124557520 + (TA)n Simple_repeat Simple_repeat 2 170 0 4 852 672 203 19 4 chr3 35042286 35042554 -124557229 + (TA)n Simple_repeat Simple_repeat 1 272 0 4 852 934 271 124 40 chr3 35043298 35043346 -124556437 - MTEb LTR MaLR -4 375 328 4 852 387 0 0 0 chr3 35043346 35043389 -124556394 + (GGAA)n Simple_repeat Simple_repeat 1 43 0 4 852 934 271 124 40 chr3 35043389 35043686 -124556097 - MTEb LTR MaLR -52 327 3 4 852 239 333 0 24 chr3 35043757 35043840 -124555943 - PB1D7 SINE Alu -17 103 23 4 852 444 254 260 0 chr3 35049338 35049511 -124550272 - ID_B1 SINE B4 -4 220 3 4 852 477 50 0 0 chr3 35050704 35050764 -124549019 + (TGGA)n Simple_repeat Simple_repeat 2 61 0 4 852 377 86 17 0 chr3 35051113 35051171 -124548612 + (TCCC)n Simple_repeat Simple_repeat 1 59 0 4 852 195 314 12 0 chr3 35052783 35052869 -124546914 + MIRc SINE MIR 88 174 -94 4 852 231 203 94 0 chr3 35053720 35053784 -124545999 + ID4_ SINE ID 3 72 -11 4 852 24 32 0 0 chr3 35053892 35053923 -124545860 + AT_rich Low_complexity Low_complexity 1 31 0 5 852 921 167 0 14 chr3 35053930 35054076 -124545707 - B1_Mur3 SINE Alu -5 144 1 5 852 243 88 0 0 chr3 35054761 35054795 -124544988 + (TGG)n Simple_repeat Simple_repeat 3 36 0 5 852 292 211 32 0 chr3 35055356 35055451 -124544332 + CT-rich Low_complexity Low_complexity 4 101 0 5 852 944 181 151 11 chr3 35056607 35056835 -124542948 + RLTR11A LTR ERVK 1 243 -284 5 852 595 215 27 0 chr3 35056846 35056995 -124542788 - RLTR15 LTR ERVK -131 228 76 5 852 1049 229 8 0 chr3 35056999 35057248 -124542535 + RLTR11A LTR ERVK 278 528 0 5 852 1789 165 17 9 chr3 35057283 35057632 -124542151 - RLTR15 LTR ERVK -7 352 1 5 852 235 313 84 0 chr3 35057632 35057763 -124542020 + L1_Mur2 LINE L1 2619 2760 -3117 5 852 252 296 88 14 chr3 35057825 35057972 -124541811 + L1MA5 LINE L1 5108 5265 -878 5 852 2214 89 29 3 chr3 35058244 35058560 -124541223 - L1_Mus3 LINE L1 0 6638 6315 5 852 6383 66 14 0 chr3 35058566 35059379 -124540404 - L1_Mus4 LINE L1 -194 6442 5619 6 852 742 298 96 61 chr3 35059393 35059905 -124539878 + L1MA5 LINE L1 5274 5877 -423 5 852 2278 117 71 5 chr3 35059905 35060273 -124539510 + ORR1B1 LTR MaLR 1 392 -2 6 852 742 299 122 68 chr3 35060273 35060432 -124539351 + L1MA5 LINE L1 5810 6041 -259 5 852 433 320 17 20 chr3 35060494 35060664 -124539119 + B4 SINE B4 63 229 -63 6 852 243 88 0 0 chr3 35060674 35060708 -124539075 + (TTAA)n Simple_repeat Simple_repeat 3 36 0 6 852 713 215 14 0 chr3 35060709 35060853 -124538930 + B1_Mus1 SINE Alu 1 146 -2 6 852 333 47 0 0 chr3 35060909 35060952 -124538831 + (CA)n Simple_repeat Simple_repeat 2 44 0 6 852 550 246 54 40 chr3 35061108 35061256 -124538527 + B1_Mur4 SINE Alu 1 150 0 6 852 330 87 0 0 chr3 35061271 35061317 -124538466 + (GGGA)n Simple_repeat Simple_repeat 1 46 0 6 852 486 238 29 0 chr3 35061348 35061453 -124538330 - URR1A DNA MER1_type -118 108 1 6 852 210 37 0 0 chr3 35061702 35061729 -124538054 + (CAA)n Simple_repeat Simple_repeat 2 28 0 6 852 279 43 0 42 chr3 35061745 35061856 -124537927 + L1Md_F2 LINE L1 6529 6582 0 7 852 1093 46 0 0 chr3 35061866 35061996 -124537787 + B1_Mus2 SINE Alu 1 130 -17 7 852 255 286 0 0 chr3 35062106 35062176 -124537607 + RSINE1 SINE B4 95 164 -1 7 852 965 272 43 0 chr3 35063418 35063675 -124536108 + B4 SINE B4 4 271 -21 7 852 321 68 0 0 chr3 35063678 35063722 -124536061 + (CA)n Simple_repeat Simple_repeat 2 45 0 7 852 240 290 99 10 chr3 35063912 35064013 -124535770 - MER45B DNA Tip100 -413 627 518 7 852 389 344 45 20 chr3 35064101 35064300 -124535483 - MER45B DNA Tip100 -722 318 115 7 852 318 87 0 0 chr3 35064333 35064379 -124535404 + (TC)n Simple_repeat Simple_repeat 1 46 0 7 852 351 0 0 0 chr3 35064379 35064418 -124535365 + (TG)n Simple_repeat Simple_repeat 2 40 0 7 852 405 0 0 0 chr3 35064668 35064713 -124535070 + (TG)n Simple_repeat Simple_repeat 2 46 0 7 852 6352 4 0 0 chr3 35064766 35065457 -124534326 + L1Md_A LINE L1 5892 6582 0 7 852 3230 39 18 0 chr3 35065491 35065880 -124533903 + MTA_Mm LTR MaLR 1 396 0 8 852 1730 142 12 54 chr3 35066847 35067183 -124532600 + RLTRETN_Mm LTR ERVK 1 322 0 8 852 1239 146 9 9 chr3 35067486 35067701 -124532082 + URR1B DNA MER1_type 11 225 0 8 852 207 0 0 0 chr3 35067831 35067854 -124531929 + (A)n Simple_repeat Simple_repeat 1 23 0 8 852 340 304 18 0 chr3 35068784 35068896 -124530887 - RMER1C Other Other -1 1341 1228 8 852 333 68 0 0 chr3 35068900 35068944 -124530839 + (CTAA)n Simple_repeat Simple_repeat 1 44 0 8 852 523 169 0 47 chr3 35068993 35069124 -124530659 + B1_Mur3 SINE Alu 32 148 -1 8 852 860 186 6 0 chr3 35069134 35069311 -124530472 + GA-rich Low_complexity Low_complexity 3 180 0 8 852 663 166 166 0 chr3 35069317 35069462 -124530321 - RMER1C Other Other -216 1126 958 8 852 2694 124 4 72 chr3 35069462 35069923 -124529860 - RLTR23 LTR ERV1 0 430 1 8 852 3440 39 0 130 chr3 35070440 35070941 -124528842 - RLTR10C LTR ERVK 0 436 1 9 852 855 190 0 0 chr3 35071486 35071702 -124528081 + (TATATG)n Simple_repeat Simple_repeat 1 216 0 9 852 1115 68 7 27 chr3 35071762 35071912 -124527871 - B1_Mus1 SINE Alu 0 148 2 9 852 200 324 99 33 chr3 35072178 35072360 -124527423 - L2c LINE L2 -2 3385 3192 9 852 275 287 84 42 chr3 35073285 35073427 -124526356 + MER103 DNA DNA 19 166 0 9 852 696 200 6 11 chr3 35073525 35073702 -124526081 + GA-rich Low_complexity Low_complexity 3 178 0 9 852 428 86 0 0 chr3 35073704 35073762 -124526021 + (GGA)n Simple_repeat Simple_repeat 1 58 0 9 852 282 257 103 19 chr3 35073940 35074047 -124525736 - PB1D10 SINE Alu 0 117 2 9 852 247 273 0 0 chr3 35074048 35074103 -124525680 + CT-rich Low_complexity Low_complexity 1 55 0 9 852 1931 182 115 8 chr3 35074926 35075396 -124524387 + RMER5 LTR ERV1 1 520 -14 9 852 887 241 1 41 chr3 35075660 35075881 -124523902 + RMER1C Other Other 572 961 -381 1 852 2571 117 40 76 chr3 35075881 35076327 -124523456 + RLTR23 LTR ERV1 1 430 0 1 852 21 36 0 0 chr3 35076652 35076680 -124523103 + AT_rich Low_complexity Low_complexity 1 28 0 1 852 3653 110 25 21 chr3 35076863 35077421 -124522362 + Lx LINE L1 6093 6652 -2 1 852 863 145 6 17 chr3 35077429 35077604 -124522179 + GA-rich Low_complexity Low_complexity 4 176 0 1 852 335 266 156 31 chr3 35077700 35077956 -124521827 + Charlie18a DNA MER1_type 51 338 -4 1 852 384 22 0 0 chr3 35079428 35079473 -124520310 + (TTA)n Simple_repeat Simple_repeat 2 46 0 1 852 450 252 47 0 chr3 35079475 35079582 -124520201 - PB1D7 SINE Alu -8 112 1 1 852 704 254 77 10 chr3 35079921 35080128 -124519655 + ID_B1 SINE B4 4 224 0 1 852 1007 197 196 84 chr3 35080280 35080408 -124519375 - MT2A LTR ERVL 0 533 431 1 852 3272 48 8 0 chr3 35080408 35080801 -124518982 - MTA_Mm LTR MaLR 0 396 1 1 852 7142 89 29 71 chr3 35080801 35081947 -124517836 - MTA_Mm-int LTR MaLR 0 1098 1 1 852 3443 40 2 0 chr3 35081947 35082342 -124517441 - MTA_Mm LTR MaLR 0 396 1 1 852 1007 211 221 56 chr3 35082342 35082763 -124517020 - MT2A LTR ERVL -103 430 1 1 852 504 351 11 11 chr3 35083033 35083223 -124516560 - MTD LTR MaLR -160 199 10 1 852 2627 251 56 45 chr3 35083231 35084058 -124515725 - MTD-int LTR MaLR 0 1370 535 1 852 726 251 72 16 chr3 35084095 35084127 -124515656 - B3 SINE B2 -4 212 181 1 852 333 47 0 0 chr3 35084127 35084170 -124515613 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 852 726 251 72 16 chr3 35084170 35084331 -124515452 - B3 SINE B2 -36 180 9 1 852 1713 269 22 41 chr3 35084333 35084875 -124514908 - MTD-int LTR MaLR -837 533 2 1 852 592 160 158 49 chr3 35084876 35085060 -124514723 - MTD LTR MaLR 0 419 216 1 852 1822 148 25 82 chr3 35085039 35085406 -124514377 + ORR1B1 LTR MaLR 41 386 -8 1 852 624 305 51 18 chr3 35085430 35085647 -124514136 - MTD LTR MaLR -190 229 6 1 852 183 42 0 0 chr3 35085695 35085719 -124514064 + (TTG)n Simple_repeat Simple_repeat 2 25 0 1 852 306 282 75 19 chr3 35086083 35086296 -124513487 + L1M5 LINE L1 4981 5205 -941 1 852 330 261 165 0 chr3 35086494 35086641 -124513142 - MTD LTR MaLR -13 408 234 1 852 1182 198 69 31 chr3 35087303 35087621 -124512162 + MERVL_2A-int LTR ERVL 1111 1440 -4321 1 852 15721 87 3 10 chr3 35087621 35091737 -124508046 + L1Md_F2 LINE L1 218 5586 -297 1 852 7915 48 19 4 chr3 35091737 35092707 -124507076 + L1Md_F2 LINE L1 5587 6570 -12 1 852 2092 211 63 15 chr3 35092707 35093165 -124506618 + MERVL_2A-int LTR ERVL 1433 1912 -3849 1 852 9940 199 78 12 chr3 35093211 35095276 -124504507 + MERVL_2A-int LTR ERVL 2011 4211 -1550 1 852 3269 227 143 32 chr3 35095276 35096250 -124503533 - Lx7 LINE L1 -652 7044 5972 1 852 414 0 0 0 chr3 35096259 35096305 -124503478 + (TTTA)n Simple_repeat Simple_repeat 4 49 0 1 852 991 51 15 0 chr3 35096309 35096446 -124503337 - B2_Mm2 SINE B2 -56 139 1 1 852 7852 196 98 51 chr3 35096446 35098482 -124501301 - Lx7 LINE L1 -1410 4470 2332 1 852 1187 55 7 0 chr3 35098482 35098628 -124501155 - B1_Mus2 SINE Alu 0 147 1 1 852 7852 196 98 51 chr3 35098628 35098810 -124500973 - Lx7 LINE L1 -3549 2331 2149 1 852 2085 187 52 141 chr3 35099149 35099789 -124499994 - Lx5 LINE L1 -13 7045 6463 1 852 186 240 0 0 chr3 35099884 35099934 -124499849 + CT-rich Low_complexity Low_complexity 3 52 0 1 852 1219 48 0 0 chr3 35099990 35100136 -124499647 + B1_Mm SINE Alu 2 147 0 1 852 351 0 0 0 chr3 35100419 35100458 -124499325 + (TAAA)n Simple_repeat Simple_repeat 3 41 0 1 852 226 135 0 0 chr3 35100482 35100519 -124499264 - MT2A LTR ERVL 0 533 497 1 852 1760 191 57 63 chr3 35100530 35101004 -124498779 + Lx6 LINE L1 1666 2136 -3744 1 852 8357 191 58 12 chr3 35102137 35103617 -124496166 + Lx6 LINE L1 5304 6905 -555 1 852 482 0 17 0 chr3 35103617 35103675 -124496108 + (GA)n Simple_repeat Simple_repeat 1 59 0 1 852 8357 206 62 18 chr3 35103675 35104232 -124495551 + Lx6 LINE L1 6906 7445 -15 1 852 504 226 28 49 chr3 35104494 35104638 -124495145 + ID_B1 SINE B4 82 222 -2 1 852 225 224 35 0 chr3 35104836 35104894 -124494889 + L1MC5 LINE L1 5379 5438 -2444 1 852 258 105 0 0 chr3 35105270 35105308 -124494475 + (GA)n Simple_repeat Simple_repeat 1 38 0 1 852 1040 277 53 51 chr3 35105707 35106178 -124493605 + L1MC5 LINE L1 6979 7450 -511 1 852 317 230 96 67 chr3 35106356 35106491 -124493292 + L1MC5 LINE L1 7691 7829 -132 1 852 989 283 91 12 chr3 35106504 35106844 -124492939 + MTEa LTR MaLR 9 375 -4 1 852 38 22 0 0 chr3 35106916 35106961 -124492822 + AT_rich Low_complexity Low_complexity 1 45 0 1 852 1221 55 0 0 chr3 35107068 35107214 -124492569 - B1_Mm SINE Alu 0 147 2 1 852 21 36 0 0 chr3 35107244 35107272 -124492511 + AT_rich Low_complexity Low_complexity 1 28 0 1 852 960 260 102 41 chr3 35107368 35107781 -124492002 - Lx7 LINE L1 -276 7420 6983 1 852 640 204 92 70 chr3 35107781 35108140 -124491643 + RMER17C LTR ERVK 1 367 -43 1 852 544 242 16 16 chr3 35108153 35108279 -124491504 - Lx7 LINE L1 -711 6985 6860 1 852 4436 203 46 35 chr3 35108269 35108733 -124491050 - L1_Mur3 LINE L1 -3432 2448 1970 1 852 1262 31 0 18 chr3 35108733 35108897 -124490886 + (GGGAGA)n Simple_repeat Simple_repeat 3 163 0 1 852 4436 203 46 35 chr3 35108897 35109511 -124490272 - L1_Mur3 LINE L1 -3911 1969 1357 1 852 4918 76 5 3 chr3 35109511 35110167 -124489616 - L1Md_F2 LINE L1 0 6582 5926 1 852 4436 267 81 50 chr3 35110167 35110612 -124489171 - L1_Mur3 LINE L1 -4524 1356 896 1 852 22 0 0 0 chr3 35111067 35111089 -124488694 + AT_rich Low_complexity Low_complexity 1 22 0 1 852 391 290 142 36 chr3 35111220 35111467 -124488316 + B4A SINE B4 2 274 -18 1 852 465 110 0 0 chr3 35111500 35111573 -124488210 + (CA)n Simple_repeat Simple_repeat 2 74 0 1 852 287 236 67 0 chr3 35111981 35112070 -124487713 - PB1D10 SINE Alu 0 117 23 1 852 213 208 0 40 chr3 35112437 35112487 -124487296 + (CATA)n Simple_repeat Simple_repeat 1 48 0 1 852 232 305 129 41 chr3 35112790 35112961 -124486822 - Charlie18a DNA MER1_type -1 341 156 1 852 21 57 0 0 chr3 35113333 35113368 -124486415 + AT_rich Low_complexity Low_complexity 1 35 0 1 852 4498 203 18 42 chr3 35113435 35113588 -124486195 - Lx7 LINE L1 -1131 6565 6410 1 852 4024 165 8 184 chr3 35113588 35114682 -124485101 - RMER19B LTR ERVK 0 902 1 1 852 5940 195 52 50 chr3 35114682 35116666 -124483117 - Lx7 LINE L1 -1287 6409 4427 1 852 4456 150 21 14 chr3 35116663 35117460 -124482323 + Lx7 LINE L1 3631 4433 -1447 1 852 261 57 0 0 chr3 35117555 35117590 -124482193 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1 852 459 322 55 49 chr3 35118632 35118690 -124481093 + B4 SINE B4 20 78 -214 1 852 926 264 137 9 chr3 35118690 35119026 -124480757 + MTEa LTR MaLR 1 379 0 1 852 459 322 55 49 chr3 35119026 35119150 -124480633 + B4 SINE B4 79 203 -89 1 852 414 0 0 0 chr3 35119186 35119232 -124480551 + (CA)n Simple_repeat Simple_repeat 1 46 0 1 852 351 0 0 0 chr3 35119645 35119684 -124480099 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 852 441 0 0 0 chr3 35122279 35122328 -124477455 + (TG)n Simple_repeat Simple_repeat 1 49 0 1 852 23 0 0 0 chr3 35123135 35123158 -124476625 + AT_rich Low_complexity Low_complexity 1 23 0 1 852 310 296 0 27 chr3 35123839 35123950 -124475833 + GA-rich Low_complexity Low_complexity 2 109 0 1 852 673 100 47 0 chr3 35123953 35124123 -124475660 + (GGA)n Simple_repeat Simple_repeat 3 180 0 1 852 366 277 0 10 chr3 35124133 35124235 -124475548 + GA-rich Low_complexity Low_complexity 1 101 0 1 852 248 120 20 0 chr3 35125240 35125290 -124474493 + (TCCC)n Simple_repeat Simple_repeat 3 53 0 1 852 584 265 37 31 chr3 35126451 35126642 -124473141 + B4 SINE B4 32 223 -69 1 852 194 98 49 0 chr3 35126646 35126687 -124473096 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 1 852 366 190 17 8 chr3 35126762 35126879 -124472904 + (CA)n Simple_repeat Simple_repeat 1 118 0 1 853 221 163 0 20 chr3 35127679 35127729 -124472054 + (TAAA)n Simple_repeat Simple_repeat 3 51 0 1 853 385 284 0 19 chr3 35127866 35127970 -124471813 + PB1D10 SINE Alu 8 109 -8 1 853 348 279 129 89 chr3 35129282 35129562 -124470221 + B4A SINE B4 1 291 -1 1 853 297 276 140 20 chr3 35130369 35130469 -124469314 + B4 SINE B4 126 237 -55 1 853 570 15 0 0 chr3 35130471 35130538 -124469245 + (CA)n Simple_repeat Simple_repeat 1 67 0 1 853 680 147 29 58 chr3 35130548 35130685 -124469098 - URR1B DNA MER1_type 0 225 93 1 853 308 333 38 82 chr3 35132681 35132864 -124466919 + ORR1E LTR MaLR 3 177 -182 1 853 216 0 0 0 chr3 35135160 35135184 -124464599 + (T)n Simple_repeat Simple_repeat 1 24 0 1 853 704 296 17 10 chr3 35135915 35136129 -124463654 - B3 SINE B2 0 216 1 1 853 332 282 32 0 chr3 35136648 35136772 -124463011 - RCHARR1 DNA MER1_type -60 914 787 1 853 1111 101 0 0 chr3 35136774 35136922 -124462861 + B1_Mus1 SINE Alu 1 148 0 1 853 405 102 0 0 chr3 35136922 35136981 -124462802 + (GAAA)n Simple_repeat Simple_repeat 2 60 0 1 853 1926 238 69 27 chr3 35137001 35137554 -124462229 - RCHARR1 DNA MER1_type -175 799 224 1 853 602 147 0 52 chr3 35137950 35138065 -124461718 + B3 SINE B2 3 111 -105 1 853 522 0 0 0 chr3 35138680 35138738 -124461045 + (TTG)n Simple_repeat Simple_repeat 2 59 0 1 853 728 291 85 12 chr3 35138839 35139086 -124460697 + B4 SINE B4 1 265 -27 1 853 332 260 13 0 chr3 35139950 35140027 -124459756 + PB1D10 SINE Alu 32 109 -8 1 853 829 295 11 36 chr3 35140556 35140834 -124458949 - B4 SINE B4 -19 273 3 1 853 392 313 35 52 chr3 35142218 35142390 -124457393 + B4 SINE B4 9 177 -115 1 853 257 75 25 0 chr3 35142775 35142815 -124456968 + (CATA)n Simple_repeat Simple_repeat 2 42 0 1 853 476 208 9 19 chr3 35143396 35143504 -124456279 + ID_B1 SINE B4 118 224 0 1 853 198 0 0 0 chr3 35144825 35144847 -124454936 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 1 853 282 263 0 0 chr3 35145715 35145772 -124454011 + tRNA-Ala-GCY_ tRNA tRNA 1 57 -18 1 853 269 355 41 0 chr3 35145838 35145959 -124453824 + PB1 SINE Alu 1 126 -1 1 853 504 351 44 0 chr3 35146738 35146966 -124452817 - MER33 DNA MER1_type -78 246 9 1 853 271 241 67 22 chr3 35147470 35147559 -124452224 + MIRb SINE MIR 55 147 -121 1 853 391 113 0 27 chr3 35148757 35148830 -124450953 + (TG)n Simple_repeat Simple_repeat 2 72 0 1 853 772 57 57 8 chr3 35151202 35151325 -124448458 - B2_Mm1a SINE B2 -2 191 63 1 853 600 298 30 40 chr3 35151465 35151664 -124448119 + B3A SINE B2 1 197 -1 1 853 373 323 6 18 chr3 35151821 35151985 -124447798 - U1 snRNA snRNA 0 165 4 1 853 381 300 0 18 chr3 35152027 35152139 -124447644 - PB1D10 SINE Alu -3 114 5 1 853 26 64 0 0 chr3 35152144 35152191 -124447592 + AT_rich Low_complexity Low_complexity 1 47 0 1 853 366 299 109 28 chr3 35153788 35154015 -124445768 - Lx8 LINE L1 -1556 5917 5639 1 853 385 244 101 62 chr3 35156794 35157021 -124442762 - MER121 Unknown Unknown -112 300 65 1 853 1224 54 0 0 chr3 35157299 35157446 -124442337 + B1_Mus1 SINE Alu 2 148 0 1 853 1564 229 72 16 chr3 35157502 35157928 -124441855 + RLTR20B3 LTR ERVK 13 483 -94 2 853 333 0 0 0 chr3 35157928 35157965 -124441818 + (TG)n Simple_repeat Simple_repeat 2 38 0 2 853 1564 232 79 22 chr3 35157965 35158058 -124441725 + RLTR20B3 LTR ERVK 457 562 -1 2 853 303 157 0 0 chr3 35158060 35158111 -124441672 - tRNA-Lys-AAG tRNA tRNA 0 76 26 2 853 429 20 0 0 chr3 35158243 35158293 -124441490 + (TG)n Simple_repeat Simple_repeat 2 51 0 2 853 658 292 71 5 chr3 35158342 35158538 -124441245 - B4 SINE B4 -3 289 81 2 853 243 212 35 0 chr3 35159229 35159314 -124440469 + GA-rich Low_complexity Low_complexity 2 89 0 2 853 454 222 86 39 chr3 35159994 35160151 -124439632 + L1M3 LINE L1 5574 5741 -703 2 853 488 165 0 23 chr3 35160153 35160240 -124439543 - URR1A DNA MER1_type -141 85 1 2 853 261 227 114 35 chr3 35160246 35160360 -124439423 + L1MB7 LINE L1 5876 5998 -186 2 853 468 0 0 0 chr3 35160724 35160776 -124439007 + (GA)n Simple_repeat Simple_repeat 1 52 0 2 853 24 0 0 0 chr3 35162529 35162553 -124437230 + AT_rich Low_complexity Low_complexity 1 24 0 2 853 1200 275 80 15 chr3 35162572 35162908 -124436875 + Lx8 LINE L1 6248 6605 -868 2 853 189 0 0 0 chr3 35162934 35162955 -124436828 + (A)n Simple_repeat Simple_repeat 1 21 0 2 853 1682 251 40 38 chr3 35163391 35163871 -124435912 + Lx8 LINE L1 6635 7115 -358 2 853 366 311 152 0 chr3 35163883 35164047 -124435736 + Lx8 LINE L1 7200 7388 -85 2 853 395 75 0 29 chr3 35164084 35164153 -124435630 + (CAGAGA)n Simple_repeat Simple_repeat 6 72 0 2 853 514 271 78 12 chr3 35164564 35164795 -124434988 + MLT1C LTR MaLR 5 235 -155 2 853 576 0 0 0 chr3 35166095 35166159 -124433624 + (GA)n Simple_repeat Simple_repeat 1 64 0 2 853 796 108 0 15 chr3 35166174 35166218 -124433565 + (GAA)n Simple_repeat Simple_repeat 2 45 0 2 853 1487 17 0 16 chr3 35166218 35166401 -124433382 + (GGAGAA)n Simple_repeat Simple_repeat 1 180 0 2 853 796 108 0 15 chr3 35166401 35166488 -124433295 + (GAA)n Simple_repeat Simple_repeat 1 86 0 2 853 569 276 135 40 chr3 35167775 35168100 -124431683 - ORR1E LTR MaLR -2 357 2 2 853 270 281 60 39 chr3 35168117 35168444 -124431339 + L1MC LINE L1 4991 5391 -773 2 853 551 197 30 22 chr3 35170535 35170764 -124429019 + (TAGA)n Simple_repeat Simple_repeat 1 231 0 2 853 252 71 54 0 chr3 35171880 35171936 -124427847 + (CAAAAA)n Simple_repeat Simple_repeat 2 60 0 2 853 255 314 0 0 chr3 35173177 35173247 -124426536 - ID2 SINE ID -13 70 1 2 853 1862 175 36 0 chr3 35173837 35174197 -124425586 - ORR1B1 LTR MaLR -16 378 6 2 853 5120 171 103 165 chr3 35174202 35175810 -124423973 - ORR1B1-int LTR MaLR 0 1509 1 2 853 2391 127 62 0 chr3 35175810 35176181 -124423602 - ORR1B1 LTR MaLR 0 394 1 2 853 672 255 161 80 chr3 35176563 35176930 -124422853 + ERVL-B4-int LTR ERVL 2654 3050 -2664 2 853 260 290 31 31 chr3 35176953 35176995 -124422788 + (TATATG)n Simple_repeat Simple_repeat 5 49 0 2 853 282 29 0 0 chr3 35176995 35177030 -124422753 + (TG)n Simple_repeat Simple_repeat 2 36 0 2 853 321 89 0 0 chr3 35177030 35177074 -124422709 + (TA)n Simple_repeat Simple_repeat 2 46 0 2 853 260 290 31 31 chr3 35177074 35177158 -124422625 + (TATATG)n Simple_repeat Simple_repeat 1 82 0 2 853 608 304 72 40 chr3 35177327 35177635 -124422148 - ORR1E LTR MaLR -41 318 1 2 853 231 309 138 87 chr3 35180226 35180524 -124419259 + Tigger15a DNA TcMar 309 621 -94 2 853 632 242 59 27 chr3 35180569 35180756 -124419027 - B3A SINE B2 -1 197 5 2 853 723 290 93 0 chr3 35181076 35181335 -124418448 + B4A SINE B4 10 292 0 2 853 238 211 69 14 chr3 35181597 35181669 -124418114 + URR1A DNA MER1_type 55 130 -96 2 853 292 198 74 188 chr3 35181671 35181744 -124418039 + URR1A DNA MER1_type 94 154 -72 2 853 198 67 43 22 chr3 35181744 35181790 -124417993 + (TA)n Simple_repeat Simple_repeat 1 47 0 2 853 292 198 74 188 chr3 35181790 35181865 -124417918 + URR1A DNA MER1_type 155 225 -1 2 853 263 85 0 21 chr3 35181983 35182031 -124417752 + (CAAAA)n Simple_repeat Simple_repeat 2 48 0 2 853 13934 20 0 0 chr3 35183478 35185731 -124414052 - L1Md_A LINE L1 0 6582 4329 2 853 41269 13 4 6 chr3 35185729 35191913 -124407870 - L1Md_A LINE L1 0 6582 416 2 853 1183 171 12 79 chr3 35192463 35192704 -124407079 - URR1B DNA MER1_type 0 225 1 2 853 25 0 0 0 chr3 35193242 35193267 -124406516 + AT_rich Low_complexity Low_complexity 1 25 0 2 853 979 257 33 70 chr3 35193721 35193993 -124405790 - B4 SINE B4 0 292 31 2 853 912 44 0 0 chr3 35194372 35194485 -124405298 + (CAAGG)n Simple_repeat Simple_repeat 1 113 0 2 853 243 0 0 0 chr3 35194488 35194515 -124405268 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 2 853 341 136 15 0 chr3 35195494 35195560 -124404223 + GA-rich Low_complexity Low_complexity 2 68 0 2 853 215 351 40 0 chr3 35196302 35196376 -124403407 + PB1D10 SINE Alu 1 77 -40 2 853 2413 162 169 8 chr3 35196533 35197037 -124402746 + RMER4B LTR ERVK 1 585 0 2 853 984 221 144 4 chr3 35198679 35198929 -124400854 + MT2A LTR ERVL 1 285 -248 2 853 713 124 35 12 chr3 35198959 35199130 -124400653 + (TAGA)n Simple_repeat Simple_repeat 1 175 0 2 853 236 174 0 0 chr3 35199130 35199176 -124400607 + MT2A LTR ERVL 488 533 0 2 853 594 266 7 7 chr3 35199365 35199509 -124400274 - ID_B1 SINE B4 0 224 81 2 853 26 30 0 0 chr3 35199739 35199772 -124400011 + AT_rich Low_complexity Low_complexity 1 33 0 2 853 252 122 0 0 chr3 35199864 35199905 -124399878 + (TTCC)n Simple_repeat Simple_repeat 3 43 0 2 853 23 33 0 0 chr3 35200126 35200156 -124399627 + AT_rich Low_complexity Low_complexity 1 30 0 2 853 427 259 62 41 chr3 35200204 35200349 -124399434 - ID_B1 SINE B4 0 224 77 2 853 718 266 74 36 chr3 35200381 35200717 -124399066 + Charlie1b DNA MER1_type 166 514 -9 2 853 22 99 0 0 chr3 35200743 35200814 -124398969 + AT_rich Low_complexity Low_complexity 1 71 0 2 853 1849 170 32 9 chr3 35201450 35201795 -124397988 + Lx7 LINE L1 5035 5387 -493 2 853 197 33 0 32 chr3 35201795 35201826 -124397957 + (CAAAA)n Simple_repeat Simple_repeat 1 30 0 2 853 1729 189 43 14 chr3 35201826 35202197 -124397586 + Lx7 LINE L1 5834 6215 -1481 2 853 1077 240 112 47 chr3 35202214 35202699 -124397084 - RMER4B LTR ERVK -10 575 17 2 853 5875 204 12 21 chr3 35202713 35203867 -124395916 + Lx7 LINE L1 6216 7359 -337 2 853 375 213 112 24 chr3 35203933 35204058 -124395725 + Lx7 LINE L1 7560 7695 -1 2 853 2406 141 60 10 chr3 35205421 35205822 -124393961 - MTC LTR MaLR 0 421 1 2 853 1323 97 17 0 chr3 35205968 35206144 -124393639 - B2_Mm2 SINE B2 -14 181 3 2 853 558 231 16 0 chr3 35206305 35206426 -124393357 + B1_Mur3 SINE Alu 13 135 -14 2 853 402 272 35 42 chr3 35206432 35206574 -124393209 + B1F SINE Alu 9 149 0 2 853 28 0 0 0 chr3 35206783 35206811 -124392972 + AT_rich Low_complexity Low_complexity 1 28 0 2 853 219 36 0 0 chr3 35207195 35207223 -124392560 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 2 853 419 62 46 0 chr3 35207342 35207407 -124392376 + (TCCCC)n Simple_repeat Simple_repeat 4 71 0 2 853 286 325 63 48 chr3 35207414 35207540 -124392243 - MLT1E2 LTR MaLR -473 154 27 2 853 2052 193 99 39 chr3 35208025 35208532 -124391251 + RMER1C Other Other 794 1330 -12 2 853 197 65 32 0 chr3 35208536 35208567 -124391216 + (CAA)n Simple_repeat Simple_repeat 2 33 0 2 853 192 226 0 0 chr3 35208605 35208667 -124391116 + (TG)n Simple_repeat Simple_repeat 2 63 0 2 853 498 228 30 0 chr3 35208704 35208805 -124390978 - RSINE1 SINE B4 -14 151 48 2 853 1318 259 69 46 chr3 35208816 35208981 -124390802 - RCHARR1 DNA MER1_type -423 551 382 2 853 831 168 7 0 chr3 35208981 35209124 -124390659 + B1_Mur1 SINE Alu 4 147 -2 2 853 1318 259 69 46 chr3 35209124 35209497 -124390286 - RCHARR1 DNA MER1_type -593 381 1 2 853 498 17 0 0 chr3 35210536 35210595 -124389188 + (TG)n Simple_repeat Simple_repeat 1 59 0 2 853 1105 61 0 12 chr3 35210921 35211086 -124388697 + (GGGA)n Simple_repeat Simple_repeat 1 163 0 2 853 281 295 62 62 chr3 35211659 35211771 -124388012 - PB1D10 SINE Alu 0 117 6 2 853 815 294 33 81 chr3 35211958 35212265 -124387518 - B4 SINE B4 0 292 1 2 853 186 71 0 0 chr3 35214084 35214112 -124385671 + (CAAT)n Simple_repeat Simple_repeat 1 28 0 2 853 210 37 0 0 chr3 35214115 35214142 -124385641 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2 853 186 118 0 56 chr3 35214405 35214441 -124385342 - L3b LINE CR1 -10 472 439 2 853 384 22 0 0 chr3 35214628 35214673 -124385110 + (TG)n Simple_repeat Simple_repeat 2 46 0 2 853 203 156 0 43 chr3 35215069 35215116 -124384667 + T-rich Low_complexity Low_complexity 2 46 0 2 853 318 343 107 16 chr3 35215247 35215499 -124384284 - ORSL DNA Tip100 0 275 1 2 853 181 330 30 76 chr3 35216308 35216439 -124383344 + MIRb SINE MIR 28 152 -116 2 853 495 0 0 0 chr3 35221190 35221245 -124378538 + (TC)n Simple_repeat Simple_repeat 2 56 0 2 853 788 30 0 0 chr3 35224240 35224341 -124375442 + B1_Mus2 SINE Alu 35 135 -12 2 853 306 0 0 0 chr3 35224341 35224375 -124375408 + (TAAA)n Simple_repeat Simple_repeat 3 36 0 2 853 711 44 0 0 chr3 35224535 35224626 -124375157 + B1_Mur4 SINE Alu 53 143 -7 2 853 528 16 0 0 chr3 35226282 35226343 -124373440 + (TC)n Simple_repeat Simple_repeat 2 62 0 2 853 255 31 0 0 chr3 35226343 35226374 -124373409 + (TG)n Simple_repeat Simple_repeat 1 32 0 2 853 213 39 0 0 chr3 35226836 35226862 -124372921 + (TGG)n Simple_repeat Simple_repeat 1 26 0 2 853 1843 229 49 18 chr3 35226978 35227468 -124372315 + RMER19C LTR ERVK 107 611 0 2 853 271 337 112 0 chr3 35228154 35228243 -124371540 + PB1 SINE Alu 1 99 -28 2 853 331 277 0 35 chr3 35228255 35228341 -124371442 + ID4_ SINE ID 1 83 0 2 853 237 65 0 0 chr3 35228955 35228986 -124370797 + (CAT)n Simple_repeat Simple_repeat 2 32 0 2 853 22 56 0 0 chr3 35229011 35229047 -124370736 + AT_rich Low_complexity Low_complexity 1 36 0 2 853 189 74 0 0 chr3 35229849 35229876 -124369907 + (CGGGGG)n Simple_repeat Simple_repeat 2 28 0 2 853 246 267 33 0 chr3 35230662 35230722 -124369061 - ID2 SINE ID -16 67 6 2 853 501 17 0 0 chr3 35231175 35231233 -124368550 + (CA)n Simple_repeat Simple_repeat 2 59 0 2 853 263 276 22 33 chr3 35233667 35233757 -124366026 + G-rich Low_complexity Low_complexity 1 89 0 2 853 21 0 0 0 chr3 35233889 35233910 -124365873 + AT_rich Low_complexity Low_complexity 1 21 0 3 853 189 0 0 0 chr3 35233910 35233931 -124365852 + (TA)n Simple_repeat Simple_repeat 1 21 0 3 853 1135 133 21 21 chr3 35235735 35235927 -124363856 - B2_Mm2 SINE B2 -1 194 3 3 853 246 282 13 0 chr3 35236020 35236098 -124363685 - Tigger7 DNA MER2_type -2373 118 40 3 853 563 304 126 16 chr3 35237060 35237307 -124362476 + B4A SINE B4 1 274 -18 3 853 288 0 0 0 chr3 35237357 35237389 -124362394 + (CA)n Simple_repeat Simple_repeat 1 32 0 3 853 192 200 0 0 chr3 35241184 35241229 -124358554 + CT-rich Low_complexity Low_complexity 1 45 0 3 853 414 0 0 0 chr3 35241870 35241916 -124357867 + (TG)n Simple_repeat Simple_repeat 1 46 0 3 853 283 280 24 29 chr3 35243126 35243309 -124356474 + B4 SINE B4 33 271 -21 3 853 326 263 0 35 chr3 35243322 35243464 -124356319 + G-rich Low_complexity Low_complexity 3 139 0 3 853 7649 98 10 2 chr3 35244881 35246617 -124353166 + L1_Mus3 LINE L1 4889 6637 -1 3 853 21 0 0 0 chr3 35246617 35246638 -124353145 + AT_rich Low_complexity Low_complexity 1 21 0 3 853 341 55 0 35 chr3 35247315 35247372 -124352411 + (TTTTTG)n Simple_repeat Simple_repeat 1 55 0 3 853 401 161 11 0 chr3 35247655 35247742 -124352041 + CT-rich Low_complexity Low_complexity 2 89 0 3 853 389 191 60 0 chr3 35248590 35248674 -124351109 + ID_B1 SINE B4 107 195 -29 3 853 307 202 72 108 chr3 35248674 35248701 -124351082 + B1F SINE Alu 26 132 -17 3 853 1770 214 40 16 chr3 35248822 35249250 -124350533 + RMER5 LTR ERV1 89 526 -8 3 853 315 0 0 0 chr3 35251093 35251128 -124348655 + (CCA)n Simple_repeat Simple_repeat 2 36 0 3 853 23 0 0 0 chr3 35252228 35252251 -124347532 + AT_rich Low_complexity Low_complexity 1 23 0 3 853 216 0 0 0 chr3 35252771 35252795 -124346988 + (TTCA)n Simple_repeat Simple_repeat 4 27 0 3 853 189 0 0 0 chr3 35253193 35253214 -124346569 + (CAAA)n Simple_repeat Simple_repeat 3 23 0 3 853 408 272 0 0 chr3 35254720 35254812 -124344971 - L2a LINE L2 -8 3418 3327 3 853 1091 197 9 9 chr3 35254829 35255039 -124344744 + B3 SINE B2 7 216 0 3 853 184 291 56 34 chr3 35256214 35256303 -124343480 + MIRc SINE MIR 63 153 -115 3 853 255 295 69 15 chr3 35256915 35257046 -124342737 + MIRc SINE MIR 14 151 -117 3 853 439 291 86 7 chr3 35257278 35257430 -124342353 - RSINE1 SINE B4 0 165 2 3 106 224 344 173 12 chr3 35258353 35258515 -124341268 + ID_B1 SINE B4 5 192 -32 3 854 309 133 48 12 chr3 35260319 35260403 -124339380 + Lx4A LINE L1 6970 7056 -2 3 854 246 174 0 0 chr3 35260403 35260449 -124339334 + (TAA)n Simple_repeat Simple_repeat 1 46 0 3 854 198 0 0 0 chr3 35262777 35262799 -124336984 + (TTTTG)n Simple_repeat Simple_repeat 1 22 0 3 854 606 256 50 0 chr3 35262871 35263031 -124336752 - MTD LTR MaLR -57 362 195 3 854 966 295 125 41 chr3 35263047 35263162 -124336621 - Lx9 LINE L1 -20 7624 7507 3 854 237 65 0 0 chr3 35263162 35263193 -124336590 + (TG)n Simple_repeat Simple_repeat 1 31 0 3 854 966 295 125 41 chr3 35263193 35263667 -124336116 - Lx9 LINE L1 -138 7506 6986 3 854 181 154 0 55 chr3 35263667 35263722 -124336061 + CT-rich Low_complexity Low_complexity 3 54 0 3 854 444 82 0 0 chr3 35263725 35263786 -124335997 + (TC)n Simple_repeat Simple_repeat 2 62 0 3 854 753 257 6 28 chr3 35263842 35264022 -124335761 - MTD LTR MaLR -243 176 1 3 854 452 312 23 8 chr3 35264028 35264157 -124335626 - B1F1 SINE Alu -13 136 6 3 854 386 292 64 101 chr3 35265072 35265369 -124334414 + B4A SINE B4 7 292 0 3 854 185 196 20 0 chr3 35265369 35265420 -124334363 + (CA)n Simple_repeat Simple_repeat 1 52 0 3 854 3339 177 39 30 chr3 35266701 35267448 -124332335 + Lx3C LINE L1 6170 6997 0 3 854 1176 69 0 0 chr3 35267953 35268098 -124331685 + B1_Mus1 SINE Alu 4 148 0 3 854 259 276 0 0 chr3 35268119 35268177 -124331606 + B4A SINE B4 88 145 -147 3 854 518 200 66 9 chr3 35268127 35268233 -124331550 + PB1D10 SINE Alu 6 117 0 3 854 2134 222 130 92 chr3 35268560 35269388 -124330395 - RMER13A LTR ERVK 0 860 1 3 854 2038 108 13 16 chr3 35269808 35270162 -124329621 + IAPLTR2b LTR ERVK 1 369 -16 3 854 24027 128 7 26 chr3 35272032 35273083 -124326700 + Lx LINE L1 559 1606 -4277 3 854 591 15 0 0 chr3 35273083 35273151 -124326632 + (TA)n Simple_repeat Simple_repeat 1 68 0 3 854 24027 158 16 40 chr3 35273151 35278351 -124321432 + Lx LINE L1 1607 6654 0 3 854 195 42 0 0 chr3 35278469 35278493 -124321290 + (CATA)n Simple_repeat Simple_repeat 4 27 0 3 854 1177 293 58 14 chr3 35278523 35278939 -124320844 + Lx9 LINE L1 6394 6827 -817 3 854 38085 19 3 8 chr3 35278938 35283929 -124315854 + L1Md_A LINE L1 624 5586 -297 3 854 8983 32 4 0 chr3 35283929 35284921 -124314862 + L1Md_A LINE L1 5587 6582 0 3 854 38085 17 4 1 chr3 35284921 35284941 -124314842 + L1Md_A LINE L1 5587 5603 -280 3 854 1496 250 149 37 chr3 35284930 35285513 -124314270 + Lx9 LINE L1 6844 7462 -182 3 854 477 0 0 0 chr3 35285513 35285566 -124314217 + (CA)n Simple_repeat Simple_repeat 2 54 0 3 854 1496 250 149 37 chr3 35285566 35285626 -124314157 + Lx9 LINE L1 7463 7559 -85 3 854 412 311 59 41 chr3 35285712 35285933 -124313850 - LTR16B1 LTR ERVL -85 395 171 3 854 585 0 0 0 chr3 35285952 35286017 -124313766 + (TATAA)n Simple_repeat Simple_repeat 5 69 0 3 854 208 386 33 8 chr3 35286808 35286928 -124312855 - L2c LINE L2 -242 3145 3023 3 854 201 74 0 0 chr3 35287651 35287678 -124312105 + (GA)n Simple_repeat Simple_repeat 1 27 0 3 854 660 298 134 36 chr3 35287792 35288062 -124311721 + MTEa LTR MaLR 54 343 -36 3 854 186 71 0 0 chr3 35288511 35288539 -124311244 + (CAAAAA)n Simple_repeat Simple_repeat 3 30 0 3 854 202 319 93 17 chr3 35288856 35289001 -124310782 + MIRb SINE MIR 103 262 0 3 854 1111 106 0 22 chr3 35289136 35289320 -124310463 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 3 854 5808 97 3 13 chr3 35289326 35290096 -124309687 - L1_Mus4 LINE L1 0 6636 5875 3 854 650 71 0 0 chr3 35290096 35290180 -124309603 + L1_Mus4 LINE L1 5773 5856 -780 3 854 830 249 1 41 chr3 35290387 35290582 -124309201 - B3 SINE B2 0 195 24 3 854 1878 27 0 9 chr3 35292861 35293083 -124306700 + L1Md_F2 LINE L1 6363 6582 0 3 854 432 0 0 0 chr3 35293416 35293464 -124306319 + (TCTA)n Simple_repeat Simple_repeat 2 49 0 3 854 195 42 0 0 chr3 35293512 35293536 -124306247 + (TG)n Simple_repeat Simple_repeat 1 24 0 3 854 240 399 0 0 chr3 35293572 35293745 -124306038 + (TG)n Simple_repeat Simple_repeat 2 174 0 3 854 579 320 45 9 chr3 35293872 35294093 -124305690 + B4A SINE B4 48 276 -16 3 854 1058 186 9 61 chr3 35295169 35295381 -124304402 + B3 SINE B2 8 208 -8 3 854 331 355 0 27 chr3 35296109 35296294 -124303489 + (CATA)n Simple_repeat Simple_repeat 1 180 0 3 854 236 360 17 22 chr3 35296306 35296485 -124303298 + (CATA)n Simple_repeat Simple_repeat 1 178 0 3 854 893 246 80 10 chr3 35296590 35296791 -124302992 - B3 SINE B2 0 216 2 3 854 641 195 151 12 chr3 35297095 35297261 -124302522 - MTD LTR MaLR 0 419 231 3 854 201 196 29 49 chr3 35297263 35297365 -124302418 + (ATATG)n Simple_repeat Simple_repeat 2 101 0 3 854 201 110 97 29 chr3 35297394 35297497 -124302286 + (ATATG)n Simple_repeat Simple_repeat 1 110 0 3 854 479 229 18 27 chr3 35297532 35297644 -124302139 + ORR1D1 LTR MaLR 260 370 -4 3 854 295 296 167 103 chr3 35297898 35298150 -124301633 - Lx8 LINE L1 -218 7255 6988 3 854 914 223 62 0 chr3 35298509 35298702 -124301081 - B3 SINE B2 -11 205 1 3 854 408 40 0 0 chr3 35298943 35298993 -124300790 + (TA)n Simple_repeat Simple_repeat 2 51 0 3 854 207 0 0 0 chr3 35298993 35299016 -124300767 + (T)n Simple_repeat Simple_repeat 1 23 0 3 854 2329 175 99 30 chr3 35300312 35300777 -124299006 - RMER1B Other Other -9 1057 561 3 854 277 308 90 90 chr3 35301785 35301974 -124297809 + B3A SINE B2 10 198 0 3 854 1442 81 16 0 chr3 35302735 35302921 -124296862 - B2_Mm1t SINE B2 -4 189 1 3 854 366 16 82 0 chr3 35303269 35303330 -124296453 + (TTTTG)n Simple_repeat Simple_repeat 1 66 0 3 854 405 81 0 0 chr3 35303753 35303815 -124295968 + (T)n Simple_repeat Simple_repeat 1 62 0 3 854 264 30 0 0 chr3 35305858 35305891 -124293892 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 3 854 200 143 19 75 chr3 35306284 35306337 -124293446 - L3 LINE CR1 -792 3697 3648 3 854 927 172 127 6 chr3 35306644 35306825 -124292958 - URR1A DNA MER1_type -10 216 14 3 854 254 50 25 0 chr3 35306988 35307028 -124292755 + (TTTG)n Simple_repeat Simple_repeat 4 44 0 3 854 457 291 18 0 chr3 35307044 35307154 -124292629 + PB1D10 SINE Alu 6 117 0 3 854 925 239 33 19 chr3 35308389 35308602 -124291181 + B3 SINE B2 1 216 0 3 854 2566 91 80 3 chr3 35308606 35308979 -124290804 - Lx LINE L1 0 6654 6253 3 854 598 309 5 5 chr3 35309282 35309477 -124290306 + L1MA8 LINE L1 4792 4986 -1157 3 854 931 99 0 0 chr3 35309481 35309612 -124290171 + B2_Mm2 SINE B2 2 132 -63 3 854 21 71 0 0 chr3 35309764 35309806 -124289977 + AT_rich Low_complexity Low_complexity 1 42 0 3 854 409 235 67 0 chr3 35309830 35309949 -124289834 + L1MA8 LINE L1 5106 5232 -908 3 854 754 279 201 37 chr3 35309943 35310548 -124289235 + L1MA8 LINE L1 5561 6261 -30 3 854 347 188 0 0 chr3 35310553 35310617 -124289166 - MLT1A1 LTR MaLR -6 402 339 3 854 638 241 46 52 chr3 35310617 35310770 -124289013 + RSINE1 SINE B4 3 154 -11 3 854 22 35 0 0 chr3 35310799 35310828 -124288955 + AT_rich Low_complexity Low_complexity 1 29 0 3 854 211 136 33 33 chr3 35311409 35311429 -124288354 + (TAA)n Simple_repeat Simple_repeat 2 22 0 3 854 1281 54 0 0 chr3 35311429 35311576 -124288207 + B1_Mus1 SINE Alu 1 147 -1 3 854 211 136 33 33 chr3 35311576 35311607 -124288176 + (TAA)n Simple_repeat Simple_repeat 2 32 0 3 854 1239 123 28 11 chr3 35311607 35311788 -124287995 + B2_Mm2 SINE B2 2 185 -10 3 854 211 136 33 33 chr3 35311788 35311796 -124287987 + (TAA)n Simple_repeat Simple_repeat 3 10 0 3 854 2158 113 6 6 chr3 35311810 35312131 -124287652 - ORR1A4 LTR MaLR -8 321 1 3 854 408 309 93 36 chr3 35312270 35312495 -124287288 + L1_Rod LINE L1 437 674 -6934 3 854 2154 87 31 16 chr3 35312495 35312812 -124286971 + RLTRETN_Mm LTR ERVK 1 322 0 4 854 25789 34 11 11 chr3 35312812 35317720 -124282063 + MMETn-int LTR ERVK 1 4844 0 4 854 2154 87 31 16 chr3 35317720 35318037 -124281746 + RLTRETN_Mm LTR ERVK 1 322 0 4 854 8351 174 50 31 chr3 35318051 35319270 -124280513 + L1_Rod LINE L1 684 1936 -3911 3 854 579 29 0 0 chr3 35319270 35319339 -124280444 + (TAGA)n Simple_repeat Simple_repeat 4 72 0 4 854 8351 173 29 44 chr3 35319339 35320458 -124279325 + L1_Rod LINE L1 1937 3031 -2816 3 854 5627 215 73 29 chr3 35320444 35321850 -124277933 + Lx9 LINE L1 6177 7644 0 4 854 21 0 0 0 chr3 35323169 35323190 -124276593 + AT_rich Low_complexity Low_complexity 1 21 0 4 854 219 114 0 0 chr3 35323262 35323297 -124276486 + (CATA)n Simple_repeat Simple_repeat 2 36 0 4 854 2020 158 60 29 chr3 35323561 35323946 -124275837 - RMER1B Other Other -2 1064 668 4 854 378 0 0 0 chr3 35324002 35324044 -124275739 + (TG)n Simple_repeat Simple_repeat 2 43 0 4 854 387 333 26 57 chr3 35324362 35324556 -124275227 - B3A SINE B2 -9 189 2 4 854 1023 96 20 1 chr3 35324703 35324867 -124274916 - Lx LINE L1 -954 6022 5853 4 854 4636 14 2 12 chr3 35324867 35325365 -124274418 - MT2_Mm LTR ERVL 0 493 1 4 854 322 0 0 0 chr3 35325365 35325403 -124274380 - MERVL-int LTR ERVL 0 5485 5448 4 854 367 167 46 35 chr3 35325403 35325490 -124274293 - ORR1A3-int LTR MaLR -1323 640 553 4 854 41273 16 14 0 chr3 35325490 35330777 -124269006 - MERVL-int LTR ERVL -125 5360 1 4 854 4636 14 2 12 chr3 35330777 35331275 -124268508 - MT2_Mm LTR ERVL 0 493 1 4 854 753 21 42 0 chr3 35331275 35331370 -124268413 - Lx LINE L1 -797 5857 5759 4 854 588 279 34 34 chr3 35331430 35331448 -124268335 + L1_Mur3 LINE L1 5028 5040 -840 4 854 1810 214 41 19 chr3 35331448 35331814 -124267969 + ORR1D1 LTR MaLR 1 374 0 4 854 588 279 34 34 chr3 35331814 35331999 -124267784 + L1_Mur3 LINE L1 5041 5231 -649 4 854 1248 193 31 34 chr3 35331999 35332321 -124267462 - RMER17C LTR ERVK -89 321 1 4 854 319 236 102 0 chr3 35332335 35332462 -124267321 + L1MC LINE L1 2203 2342 -3804 4 854 21 71 0 0 chr3 35332548 35332590 -124267193 + AT_rich Low_complexity Low_complexity 1 42 0 4 854 567 311 0 58 chr3 35332761 35332935 -124266848 + RSINE1 SINE B4 2 165 0 4 854 513 341 60 11 chr3 35332968 35333333 -124266450 + L1MD LINE L1 2655 3037 -3109 4 854 5525 187 154 15 chr3 35333336 35334565 -124265218 + Lx9 LINE L1 6107 7479 -165 4 854 405 0 0 0 chr3 35334565 35334610 -124265173 + (TG)n Simple_repeat Simple_repeat 1 45 0 4 854 5525 187 154 15 chr3 35334610 35334730 -124265053 + Lx9 LINE L1 7480 7643 -1 4 854 229 259 55 6 chr3 35334962 35335125 -124264658 + L1MD LINE L1 3128 3298 -2848 4 854 254 309 42 11 chr3 35335136 35335231 -124264552 + PB1D10 SINE Alu 12 109 -8 4 854 1326 294 58 53 chr3 35335256 35335956 -124263827 + L1M5 LINE L1 3316 4016 -2130 4 854 295 276 13 0 chr3 35335956 35336032 -124263751 + ID4_ SINE ID 2 78 -5 4 854 1326 294 58 53 chr3 35336032 35336174 -124263609 + L1M5 LINE L1 4017 4162 -1984 4 854 604 276 120 33 chr3 35336529 35336851 -124262932 + L1_Rod LINE L1 899 1249 -6359 4 854 865 149 64 0 chr3 35336851 35336992 -124262791 + B1_Mur4 SINE Alu 1 150 0 4 854 604 276 120 33 chr3 35336992 35337003 -124262780 + L1_Rod LINE L1 1250 1260 -6348 4 854 225 280 13 0 chr3 35337020 35337095 -124262688 + L1_Rod LINE L1 1236 1311 -4536 4 854 1390 269 93 46 chr3 35337416 35338134 -124261649 + RMER1A Other Other 15 524 -542 4 854 3209 237 190 9 chr3 35338196 35339068 -124260715 + RMER1A Other Other 1 1030 0 4 854 276 318 0 0 chr3 35339062 35339147 -124260636 + L1_Rod LINE L1 2198 2282 -3565 4 854 7071 86 6 0 chr3 35339192 35340411 -124259372 + L1VL4 LINE L1 17 1243 -2316 4 854 445 217 34 7 chr3 35340569 35340677 -124259106 + PB1D7 SINE Alu 23 130 -19 4 854 188 225 0 0 chr3 35340678 35340718 -124259065 - L2a LINE L2 -86 3340 3301 4 854 303 28 0 0 chr3 35341137 35341173 -124258610 + (CA)n Simple_repeat Simple_repeat 2 37 0 4 854 15993 122 28 18 chr3 35341173 35344171 -124255612 + Lx9 LINE L1 1606 3913 -1 4 854 1034 258 11 98 chr3 35344375 35344578 -124255205 + L1_Mur3 LINE L1 944 1137 -6591 4 854 2589 68 0 0 chr3 35344578 35344899 -124254884 + L1_Mus1 LINE L1 6247 6567 0 4 854 9499 209 50 28 chr3 35344899 35347390 -124252393 + L1_Mur3 LINE L1 1138 3674 -2206 4 854 3719 222 18 11 chr3 35349510 35350244 -124249539 + Lx7 LINE L1 6266 7004 -692 4 854 5451 233 59 168 chr3 35350239 35353139 -124246644 + Lx9 LINE L1 3245 5827 -20 4 854 3213 56 5 2 chr3 35353139 35353534 -124246249 + MTA_Mm LTR MaLR 1 396 0 4 854 5451 298 74 40 chr3 35353534 35355101 -124244682 + Lx9 LINE L1 5828 7598 -46 4 854 26 0 0 0 chr3 35355148 35355174 -124244609 + AT_rich Low_complexity Low_complexity 1 26 0 4 854 344 283 159 36 chr3 35355309 35355919 -124243864 + L1MD3 LINE L1 5255 5942 -2053 4 854 235 289 53 0 chr3 35355942 35356018 -124243765 + L1MA10 LINE L1 6171 6250 -84 4 854 21 0 0 0 chr3 35356484 35356505 -124243278 + AT_rich Low_complexity Low_complexity 1 21 0 4 854 840 20 0 0 chr3 35356646 35356744 -124243039 + (TA)n Simple_repeat Simple_repeat 2 99 0 4 854 186 345 0 0 chr3 35357727 35357785 -124241998 - L2b LINE L2 -27 3399 3342 4 854 193 344 75 56 chr3 35357844 35358004 -124241779 - L2b LINE L2 -211 3164 3002 4 854 1546 147 98 0 chr3 35358026 35358311 -124241472 - RLTR28 LTR ERVL -176 348 36 4 854 279 193 46 51 chr3 35358433 35358545 -124241238 - MTEa LTR MaLR -1 378 257 4 854 246 312 43 26 chr3 35358649 35358764 -124241019 - MTEa LTR MaLR -242 117 1 4 854 2714 183 50 20 chr3 35359624 35359864 -124239919 + RMER15 LTR ERVL 1 231 -344 4 854 3254 56 2 2 chr3 35359864 35360260 -124239523 + MTA_Mm LTR MaLR 1 396 0 4 854 2714 183 50 20 chr3 35360260 35360427 -124239356 + RMER15 LTR ERVL 232 414 -161 4 854 1981 157 106 3 chr3 35360427 35360784 -124238999 - ORR1B1 LTR MaLR 0 394 1 4 854 2714 183 50 20 chr3 35360784 35360933 -124238850 + RMER15 LTR ERVL 415 573 -2 4 854 1090 126 114 10 chr3 35360941 35361142 -124238641 + URR1A DNA MER1_type 1 222 -4 4 854 345 343 105 43 chr3 35361406 35361616 -124238167 + RMER15 LTR ERVL 353 575 0 4 854 414 0 0 0 chr3 35363131 35363177 -124236606 + (GA)n Simple_repeat Simple_repeat 1 46 0 4 854 183 277 205 0 chr3 35364103 35364186 -124235597 - MER5B DNA MER1_type -2 176 77 4 854 1395 186 81 20 chr3 35364229 35364586 -124235197 - L1MA7 LINE L1 -2 6289 5911 4 854 194 392 25 12 chr3 35365359 35365519 -124234264 - MER5B DNA MER1_type -7 171 10 4 854 199 50 0 70 chr3 35366430 35366473 -124233310 + (CAAAAA)n Simple_repeat Simple_repeat 2 41 0 4 854 270 300 55 62 chr3 35367025 35367153 -124232630 + L2b LINE L2 3241 3367 -8 4 854 765 85 0 0 chr3 35368972 35369078 -124230705 + (TCC)n Simple_repeat Simple_repeat 1 106 0 4 854 275 266 0 25 chr3 35369078 35369159 -124230624 + CT-rich Low_complexity Low_complexity 1 79 0 4 854 232 341 95 15 chr3 35369421 35369558 -124230225 + MIR SINE MIR 13 160 -102 4 854 585 94 0 0 chr3 35370285 35370370 -124229413 + (TTCC)n Simple_repeat Simple_repeat 1 85 0 4 854 1045 309 145 2 chr3 35370871 35371435 -124228348 + L1MC3 LINE L1 7141 7785 0 4 854 233 275 88 0 chr3 35371480 35371560 -124228223 + L1M2 LINE L1 5402 5488 -812 4 854 437 278 26 16 chr3 35371654 35371848 -124227935 + L1M2 LINE L1 5473 5668 -632 4 854 856 218 203 20 chr3 35371930 35372225 -124227558 - MTEa LTR MaLR -2 377 29 4 854 252 224 0 0 chr3 35374287 35374354 -124225429 + (CA)n Simple_repeat Simple_repeat 1 67 0 4 854 414 0 0 0 chr3 35374995 35375041 -124224742 + (TG)n Simple_repeat Simple_repeat 2 47 0 4 854 442 308 38 6 chr3 35375051 35375211 -124224572 + RSINE1 SINE B4 1 165 0 4 854 187 320 13 26 chr3 35377485 35377562 -124222221 + MIR SINE MIR 70 145 -63 4 854 524 123 7 37 chr3 35378198 35378333 -124221450 + (TG)n Simple_repeat Simple_repeat 2 132 0 4 854 387 0 0 0 chr3 35378333 35378376 -124221407 + (GA)n Simple_repeat Simple_repeat 1 43 0 4 854 215 186 58 65 chr3 35378400 35378555 -124221228 + (ATGTG)n Simple_repeat Simple_repeat 4 157 0 4 854 432 0 0 0 chr3 35378574 35378622 -124221161 + (TG)n Simple_repeat Simple_repeat 1 48 0 4 854 617 92 16 16 chr3 35378738 35378860 -124220923 + (TG)n Simple_repeat Simple_repeat 1 122 0 4 854 211 286 0 0 chr3 35379882 35379931 -124219852 + CT-rich Low_complexity Low_complexity 2 50 0 4 854 576 0 0 0 chr3 35380750 35380814 -124218969 + (GA)n Simple_repeat Simple_repeat 1 64 0 4 854 330 26 0 0 chr3 35381572 35381611 -124218172 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 4 854 181 278 0 18 chr3 35382114 35382169 -124217614 - MIRb SINE MIR -159 109 56 4 854 387 149 0 0 chr3 35382450 35382524 -124217259 + (CA)n Simple_repeat Simple_repeat 1 74 0 4 854 444 281 89 34 chr3 35382564 35382959 -124216824 + L1MD LINE L1 4039 4463 -1683 4 854 716 156 19 12 chr3 35383432 35383594 -124216189 + CT-rich Low_complexity Low_complexity 4 166 0 4 854 608 229 109 26 chr3 35383599 35383792 -124215991 + ORR1D1 LTR MaLR 166 374 0 4 854 843 152 0 0 chr3 35384204 35384349 -124215434 + CT-rich Low_complexity Low_complexity 2 146 0 4 854 671 111 67 17 chr3 35384368 35384487 -124215296 - B1_Mur4 SINE Alu -20 130 6 4 854 234 181 52 98 chr3 35384385 35384538 -124215245 - ORR1B1-int LTR MaLR -750 759 614 4 854 213 311 27 0 chr3 35384878 35384952 -124214831 + L2a LINE L2 3351 3426 0 4 854 205 138 0 0 chr3 35385469 35385498 -124214285 + (TCCA)n Simple_repeat Simple_repeat 1 29 0 4 854 501 238 19 0 chr3 35386145 35386250 -124213533 + PB1D7 SINE Alu 4 110 -10 4 854 2533 198 47 0 chr3 35386872 35387362 -124212421 - RMER1B Other Other 0 1066 554 4 854 432 208 128 60 chr3 35387403 35387536 -124212247 - RLTR20C LTR ERVK 0 534 393 4 854 3510 28 4 128 chr3 35387705 35388203 -124211580 + RLTR10C LTR ERVK 1 436 0 4 854 1310 226 60 55 chr3 35388333 35388768 -124211015 - RLTR20A2 LTR ERVK -133 445 9 4 854 378 0 0 0 chr3 35388780 35388822 -124210961 + (CA)n Simple_repeat Simple_repeat 2 43 0 4 855 225 386 36 23 chr3 35389804 35390024 -124209759 + MLT1J LTR MaLR 6 228 -284 4 855 386 0 0 39 chr3 35390346 35390361 -124209422 + (CTG)n Simple_repeat Simple_repeat 1 14 0 4 855 429 20 0 0 chr3 35390361 35390411 -124209372 + (TGG)n Simple_repeat Simple_repeat 1 50 0 4 855 386 0 0 39 chr3 35390411 35390446 -124209337 + (CTG)n Simple_repeat Simple_repeat 2 36 0 4 855 579 257 154 101 chr3 35390462 35390748 -124209035 + MTEa LTR MaLR 2 302 -77 4 855 371 214 122 25 chr3 35390854 35390995 -124208788 - MLT1A1 LTR MaLR -7 460 280 4 855 248 319 0 21 chr3 35391084 35391180 -124208603 - MLT1A1 LTR MaLR -288 120 27 4 855 274 267 13 13 chr3 35391371 35391447 -124208336 + ID4_ SINE ID 2 77 -6 4 855 215 220 20 0 chr3 35392231 35392281 -124207502 + (TG)n Simple_repeat Simple_repeat 2 52 0 4 855 372 303 0 9 chr3 35392298 35392408 -124207375 - B4A SINE B4 -8 284 176 4 855 276 245 152 29 chr3 35392356 35392461 -124207322 - PB1D7 SINE Alu 0 120 3 5 855 287 208 181 0 chr3 35392461 35392500 -124207283 - B4A SINE B4 -204 88 37 4 855 391 165 62 79 chr3 35393165 35393343 -124206440 + (CAGGA)n Simple_repeat Simple_repeat 5 179 0 5 855 390 128 52 26 chr3 35393378 35393531 -124206252 + (CA)n Simple_repeat Simple_repeat 2 158 0 5 855 202 173 36 43 chr3 35394081 35394220 -124205563 + (CA)n Simple_repeat Simple_repeat 1 138 0 5 855 485 209 6 0 chr3 35394299 35394457 -124205326 + (CA)n Simple_repeat Simple_repeat 1 159 0 5 855 1029 306 103 46 chr3 35394802 35395308 -124204475 - L1MA4A LINE L1 -1653 5991 5492 5 855 251 192 39 64 chr3 35395522 35395600 -124204183 - ID4_ SINE ID -2 81 6 5 855 354 257 0 51 chr3 35397016 35397094 -124202689 + ID4 SINE ID 9 82 -1 5 855 225 94 0 0 chr3 35397236 35397268 -124202515 + (TA)n Simple_repeat Simple_repeat 1 32 0 5 855 204 40 0 0 chr3 35397268 35397292 -124202491 + (CA)n Simple_repeat Simple_repeat 2 26 0 5 855 363 252 60 9 chr3 35397292 35397408 -124202375 - Lx9 LINE L1 -187 7457 7336 5 855 816 134 0 0 chr3 35397496 35397623 -124202160 + ORR1A3 LTR MaLR 1 127 -199 5 855 692 111 19 0 chr3 35397611 35397719 -124202064 - MT2B LTR ERVL -491 110 1 5 855 248 276 92 37 chr3 35397984 35398093 -124201690 + PB1D10 SINE Alu 6 120 0 5 855 420 123 43 9 chr3 35398711 35398826 -124200957 + (CA)n Simple_repeat Simple_repeat 2 120 0 5 855 281 94 58 23 chr3 35398854 35398941 -124200842 + (CA)n Simple_repeat Simple_repeat 2 91 0 5 855 232 164 44 26 chr3 35398983 35399096 -124200687 + (CA)n Simple_repeat Simple_repeat 2 116 0 5 855 304 199 21 38 chr3 35399103 35399346 -124200437 + (CATA)n Simple_repeat Simple_repeat 1 238 0 5 855 277 213 34 28 chr3 35399383 35399562 -124200221 + (CA)n Simple_repeat Simple_repeat 1 180 0 5 855 516 45 0 0 chr3 35399597 35399664 -124200119 + (CA)n Simple_repeat Simple_repeat 1 67 0 5 855 231 318 30 99 chr3 35400583 35400915 -124198868 - L1M5 LINE L1 -209 5915 5607 5 855 632 269 130 16 chr3 35401989 35402235 -124197548 + B4A SINE B4 2 275 -17 5 855 414 0 0 0 chr3 35402308 35402354 -124197429 + (CA)n Simple_repeat Simple_repeat 2 47 0 5 855 287 227 50 0 chr3 35402461 35402580 -124197203 + (TCTA)n Simple_repeat Simple_repeat 3 127 0 5 855 332 77 19 0 chr3 35402767 35402819 -124196964 + (TTCA)n Simple_repeat Simple_repeat 4 56 0 5 855 8312 25 0 3 chr3 35403347 35404279 -124195504 + RLTR13B3 LTR ERVK 1 929 0 5 855 5917 130 45 4 chr3 35404458 35405368 -124194415 - Lx4A LINE L1 0 7058 6112 5 855 366 121 0 0 chr3 35406766 35406832 -124192951 + (TG)n Simple_repeat Simple_repeat 1 66 0 5 855 672 272 23 12 chr3 35406835 35407006 -124192777 - B3A SINE B2 -22 176 4 5 855 6315 159 34 10 chr3 35407006 35408711 -124191072 - Lx7 LINE L1 -1125 6571 4829 5 855 396 40 0 0 chr3 35408986 35409036 -124190747 + (GA)n Simple_repeat Simple_repeat 2 51 0 5 855 187 235 12 24 chr3 35409099 35409182 -124190601 + GA-rich Low_complexity Low_complexity 1 82 0 5 855 690 243 7 7 chr3 35410454 35410603 -124189180 + B1_Mur2 SINE Alu 1 149 0 5 855 330 98 0 0 chr3 35410699 35410750 -124189033 + (TCC)n Simple_repeat Simple_repeat 2 52 0 5 855 34 24 0 0 chr3 35410996 35411037 -124188746 + AT_rich Low_complexity Low_complexity 1 41 0 5 855 652 311 58 56 chr3 35411436 35411769 -124188014 + L1M2 LINE L1 1899 2293 -4289 5 855 893 237 54 171 chr3 35411769 35412197 -124187586 - MTE2a LTR MaLR 0 379 2 5 855 652 307 57 54 chr3 35412197 35412859 -124186924 + L1M2 LINE L1 2225 2890 -3959 5 855 653 255 20 54 chr3 35412861 35413064 -124186719 + B3A SINE B2 1 196 -2 5 855 317 306 94 62 chr3 35413107 35413640 -124186143 + L1M2 LINE L1 2901 3450 -3395 5 855 240 0 24 48 chr3 35413689 35413731 -124186052 + (CAAAA)n Simple_repeat Simple_repeat 5 45 0 5 855 302 271 58 29 chr3 35413846 35413983 -124185800 + ORR1E LTR MaLR 216 356 -3 5 855 2006 307 52 40 chr3 35414032 35414566 -124185217 + L1M2 LINE L1 4270 4822 -2023 5 855 1370 226 136 5 chr3 35414566 35414935 -124184848 - MTD LTR MaLR 0 419 3 5 855 2006 307 52 40 chr3 35414935 35415537 -124184246 + L1M2 LINE L1 4823 5419 -1426 5 855 2480 113 48 13 chr3 35415568 35415946 -124183837 + ORR1B1 LTR MaLR 4 394 0 5 855 24 53 0 0 chr3 35415953 35415991 -124183792 + AT_rich Low_complexity Low_complexity 1 38 0 5 855 245 225 648 0 chr3 35416023 35416145 -124183638 - B3 SINE B2 -4 212 11 5 855 386 264 0 0 chr3 35416145 35416236 -124183547 + L1M2 LINE L1 6405 6495 -507 5 855 213 175 0 0 chr3 35416237 35416277 -124183506 + (CA)n Simple_repeat Simple_repeat 1 40 0 5 855 853 248 19 23 chr3 35416435 35416650 -124183133 + B3 SINE B2 3 216 0 5 855 26 30 0 0 chr3 35416809 35416842 -124182941 + AT_rich Low_complexity Low_complexity 1 33 0 5 855 1217 221 18 18 chr3 35416897 35417228 -124182555 - L1_Mur3 LINE L1 -2992 2888 2558 5 855 810 193 0 0 chr3 35418240 35418385 -124181398 - B1_Mur4 SINE Alu -5 145 1 5 855 432 51 0 0 chr3 35418534 35418593 -124181190 + (TG)n Simple_repeat Simple_repeat 1 59 0 5 855 4233 81 3 9 chr3 35419978 35420542 -124179241 + L1_Mus3 LINE L1 6074 6634 -4 5 855 234 0 0 0 chr3 35420547 35420573 -124179210 + (GA)n Simple_repeat Simple_repeat 1 26 0 5 855 610 297 84 49 chr3 35420815 35420945 -124178838 + L1MD3 LINE L1 7366 7495 -500 5 855 1089 168 104 0 chr3 35420945 35421147 -124178636 - URR1B DNA MER1_type -2 223 1 5 855 610 297 84 49 chr3 35421147 35421466 -124178317 + L1MD3 LINE L1 7496 7831 -164 5 855 2442 203 54 19 chr3 35421523 35422061 -124177722 - RMER15 LTR ERVL -3 572 16 5 855 237 83 0 0 chr3 35422542 35422578 -124177205 + (TG)n Simple_repeat Simple_repeat 2 37 0 5 855 230 221 162 0 chr3 35422582 35422650 -124177133 + L2a LINE L2 3348 3426 0 5 855 2654 113 8 3 chr3 35423194 35423576 -124176207 + Lx2 LINE L1 6613 6996 -1 5 855 4095 273 40 10 chr3 35423831 35425005 -124174778 + Lx7 LINE L1 5587 6795 -901 5 855 2338 162 48 5 chr3 35425005 35425142 -124174641 - RMER4A LTR ERVK 0 466 325 5 855 180 0 0 0 chr3 35425142 35425162 -124174621 + (TTTA)n Simple_repeat Simple_repeat 3 22 0 5 855 2338 162 48 5 chr3 35425162 35425439 -124174344 - RMER4A LTR ERVK -142 324 35 5 855 359 117 43 0 chr3 35425456 35425550 -124174233 + T-rich Low_complexity Low_complexity 3 100 0 5 855 959 80 0 14 chr3 35425551 35425691 -124174092 - B1_Mus1 SINE Alu 0 148 11 5 855 1665 255 63 32 chr3 35425722 35426248 -124173535 + Lx7 LINE L1 6792 7333 -363 5 855 767 149 7 29 chr3 35426268 35426406 -124173377 - B1_Mus1 SINE Alu -6 142 8 5 855 21 57 0 0 chr3 35426430 35426465 -124173318 + AT_rich Low_complexity Low_complexity 1 35 0 5 855 444 174 54 0 chr3 35426922 35427014 -124172769 + MTE2b LTR MaLR 283 379 0 5 855 660 67 0 0 chr3 35427148 35427238 -124172545 + (TG)n Simple_repeat Simple_repeat 1 90 0 5 855 266 302 74 5 chr3 35429649 35429805 -124169978 - MIRm SINE MIR -90 172 9 5 855 1223 62 0 0 chr3 35430530 35430676 -124169107 + B1_Mm SINE Alu 1 146 -1 5 855 216 188 0 0 chr3 35430683 35430731 -124169052 + A-rich Low_complexity Low_complexity 4 51 0 5 855 1224 155 4 80 chr3 35430965 35431204 -124168579 - URR1A DNA MER1_type -5 221 1 5 855 345 271 36 9 chr3 35432502 35432606 -124167177 + PB1D10 SINE Alu 13 115 -2 5 855 514 288 29 0 chr3 35432996 35433166 -124166617 + L1MA6 LINE L1 6125 6299 -1 5 855 622 279 260 12 chr3 35433420 35433610 -124166173 + L1MB7 LINE L1 5417 5652 -532 5 855 369 0 0 0 chr3 35433610 35433651 -124166132 + (TC)n Simple_repeat Simple_repeat 2 42 0 5 855 294 29 0 0 chr3 35433651 35433685 -124166098 + (TG)n Simple_repeat Simple_repeat 2 36 0 5 855 622 279 260 12 chr3 35433685 35433990 -124165793 + L1MB7 LINE L1 5653 6035 -149 5 855 412 277 66 70 chr3 35434749 35434990 -124164793 - MLT1A0 LTR MaLR -5 360 121 5 855 263 204 8 115 chr3 35434992 35435114 -124164669 - Lx6 LINE L1 -43 7417 7309 5 855 1979 149 3 8 chr3 35435124 35435477 -124164306 - RLTR15 LTR ERVK -8 351 1 5 855 943 292 9 0 chr3 35435477 35435710 -124164073 - Lx5 LINE L1 -120 6930 6696 5 855 8062 31 7 2 chr3 35437384 35438976 -124160807 - L1Md_F2 LINE L1 0 6582 4979 5 855 748 57 9 9 chr3 35439997 35440104 -124159679 + (GAA)n Simple_repeat Simple_repeat 2 108 0 5 855 573 226 0 2 chr3 35440642 35441159 -124158624 + (TG)n Simple_repeat Simple_repeat 1 515 0 5 855 287 196 7 20 chr3 35441170 35441321 -124158462 + (TG)n Simple_repeat Simple_repeat 1 149 0 5 855 411 224 96 114 chr3 35441324 35441490 -124158293 - RSINE1 SINE B4 0 165 3 5 855 523 279 36 44 chr3 35442411 35442738 -124157045 + RLTR12B LTR ERVK 11 230 -298 5 855 244 85 21 0 chr3 35442879 35442926 -124156857 - MT2A LTR ERVL -5 528 481 5 855 2669 173 13 25 chr3 35442927 35443449 -124156334 - RMER20A LTR ERVK 0 516 1 5 855 1544 202 183 5 chr3 35443451 35443844 -124155939 - MT2A LTR ERVL -69 464 2 5 855 2356 194 7 0 chr3 35443864 35444281 -124155502 + MTC LTR MaLR 1 420 -1 5 855 810 299 160 29 chr3 35444336 35444791 -124154992 + Lx8 LINE L1 6927 7441 -32 5 855 2810 231 46 33 chr3 35447193 35448272 -124151511 + L1_Mur3 LINE L1 822 1929 -3951 5 855 261 216 132 38 chr3 35448287 35448393 -124151390 - Lx7 LINE L1 -16 7680 7565 5 855 518 244 30 0 chr3 35448419 35448554 -124151229 - Lx7 LINE L1 -643 7053 6915 5 855 270 0 0 0 chr3 35449114 35449144 -124150639 + (CA)n Simple_repeat Simple_repeat 2 31 0 5 855 339 65 0 0 chr3 35449165 35449211 -124150572 + (CA)n Simple_repeat Simple_repeat 2 47 0 5 855 225 0 0 0 chr3 35449236 35449261 -124150522 + (CA)n Simple_repeat Simple_repeat 2 26 0 5 855 3453 40 0 0 chr3 35449618 35450014 -124149769 + MTA_Mm LTR MaLR 1 396 0 5 855 703 264 93 28 chr3 35450233 35450447 -124149336 + Lx5 LINE L1 6792 7019 -31 5 855 365 38 0 54 chr3 35450463 35450519 -124149264 + (TG)n Simple_repeat Simple_repeat 2 54 0 5 855 762 330 75 5 chr3 35451061 35451445 -124148338 + Tigger7 DNA MER2_type 1 411 -2080 5 855 1289 284 35 33 chr3 35451619 35452136 -124147647 - Lx8 LINE L1 -1 7472 6955 5 855 398 337 28 84 chr3 35452192 35452370 -124147413 - MER5A DNA MER1_type -1 188 21 5 855 466 187 31 0 chr3 35452716 35452985 -124146798 + (CAGAGA)n Simple_repeat Simple_repeat 1 277 0 5 855 300 317 141 19 chr3 35453027 35453233 -124146550 + HAL1-3A_ME LINE L1 1975 2205 -653 5 855 950 114 0 39 chr3 35453236 35453418 -124146365 + GA-rich Low_complexity Low_complexity 3 177 0 5 855 278 328 65 14 chr3 35453704 35453843 -124145940 + MER5B DNA MER1_type 33 178 0 5 855 25 0 0 0 chr3 35453859 35453884 -124145899 + AT_rich Low_complexity Low_complexity 1 25 0 5 855 692 184 39 7 chr3 35453885 35454038 -124145745 - Lx4A LINE L1 0 7058 6901 6 855 1890 42 4 16 chr3 35454043 35454285 -124145498 + L1Md_F2 LINE L1 6343 6581 -1 6 855 6949 98 19 9 chr3 35454291 35455296 -124144487 - L1_Mus3 LINE L1 -97 5786 4772 6 855 6521 80 2 9 chr3 35455298 35456173 -124143610 + L1_Mus3 LINE L1 5770 6638 0 6 855 195 42 0 0 chr3 35456302 35456326 -124143457 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 6 855 1053 88 0 13 chr3 35456326 35456465 -124143318 - B1_Mus1 SINE Alu -8 140 2 6 855 1163 74 0 0 chr3 35457075 35457223 -124142560 + B1_Mus1 SINE Alu 1 148 0 6 855 432 273 24 27 chr3 35457430 35457575 -124142208 + B1F SINE Alu 1 149 0 6 855 198 0 0 0 chr3 35457576 35457598 -124142185 + (CAAA)n Simple_repeat Simple_repeat 3 24 0 6 855 309 181 0 0 chr3 35457671 35457765 -124142018 + (TG)n Simple_repeat Simple_repeat 2 95 0 6 855 317 229 21 43 chr3 35459765 35460002 -124139781 + (TAGA)n Simple_repeat Simple_repeat 1 231 0 6 855 216 18 50 67 chr3 35460256 35460316 -124139467 + (TTTTG)n Simple_repeat Simple_repeat 2 60 0 6 855 278 238 39 10 chr3 35460894 35460996 -124138787 - L2 LINE L2 -553 2866 2762 6 855 258 249 138 46 chr3 35461110 35461251 -124138532 - L1M6 LINE L1 -4818 1678 1546 6 855 663 254 12 6 chr3 35462094 35462173 -124137610 + ID SINE ID 1 80 -144 6 855 354 303 27 9 chr3 35462173 35462283 -124137500 + PB1D10 SINE Alu 1 112 -5 6 855 310 261 22 22 chr3 35464684 35464774 -124135009 + (TATG)n Simple_repeat Simple_repeat 4 93 0 6 855 566 209 6 28 chr3 35464775 35464957 -124134826 + (TATATG)n Simple_repeat Simple_repeat 3 180 0 6 855 960 251 50 25 chr3 35464979 35465261 -124134522 - B4 SINE B4 -2 290 2 6 855 180 256 0 0 chr3 35465632 35465675 -124134108 + MIR SINE MIR 105 147 -61 6 855 209 306 202 4 chr3 35466066 35466299 -124133484 + L2 LINE L2 1551 1829 -1590 6 855 2234 185 82 25 chr3 35466308 35466817 -124132966 + RMER15 LTR ERVL 1 538 -37 6 855 259 281 146 59 chr3 35466829 35467048 -124132735 + L2 LINE L2 2349 2586 -833 6 855 306 317 86 37 chr3 35467306 35467575 -124132208 + L2 LINE L2 2713 2994 -425 6 855 297 0 0 0 chr3 35467972 35468005 -124131778 + (CAAAAA)n Simple_repeat Simple_repeat 2 34 0 6 855 3100 73 2 2 chr3 35468010 35468406 -124131377 - MTA_Mm LTR MaLR 0 396 1 6 855 309 269 48 0 chr3 35469111 35469215 -124130568 + PB1D9 SINE Alu 2 110 -10 6 855 2392 52 0 0 chr3 35469275 35469562 -124130221 - L1_Mus1 LINE L1 0 6567 6281 6 855 387 198 142 0 chr3 35469609 35469740 -124130043 + MLT1B LTR MaLR 231 462 -5 6 855 339 304 164 9 chr3 35469832 35470064 -124129719 + Tigger5 DNA MER2_type 2137 2404 -2 6 855 4601 89 39 24 chr3 35470383 35471051 -124128732 + RLTR33 LTR ERVK 1 678 0 6 855 1248 41 0 0 chr3 35471179 35471326 -124128457 - B1_Mus2 SINE Alu 0 147 1 6 855 762 249 121 16 chr3 35472123 35472230 -124127553 - Lx2B LINE L1 -9 6991 6883 6 855 222 37 0 0 chr3 35472230 35472257 -124127526 + (CCCA)n Simple_repeat Simple_repeat 1 27 0 6 855 762 249 121 16 chr3 35472257 35472398 -124127385 - Lx2B LINE L1 -118 6882 6718 6 855 563 202 101 0 chr3 35472402 35472531 -124127252 - B1_Mur2 SINE Alu -7 142 1 6 855 617 22 44 0 chr3 35472538 35472629 -124127154 + (TC)n Simple_repeat Simple_repeat 2 96 0 6 855 387 130 0 0 chr3 35472629 35472705 -124127078 + (TG)n Simple_repeat Simple_repeat 2 78 0 6 855 3468 50 0 0 chr3 35473728 35474144 -124125639 - L1_Mus1 LINE L1 0 6567 6152 6 855 711 201 27 40 chr3 35474248 35474398 -124125385 + B1_Mur2 SINE Alu 1 148 -1 6 855 529 270 18 35 chr3 35474602 35474771 -124125012 + B3A SINE B2 1 166 -32 6 855 405 0 0 0 chr3 35474782 35474827 -124124956 + (CA)n Simple_repeat Simple_repeat 1 45 0 6 855 1116 286 80 19 chr3 35474959 35475333 -124124450 + MTD LTR MaLR 1 397 -22 6 855 366 333 89 22 chr3 35475373 35475508 -124124275 + B4A SINE B4 2 145 -147 6 855 446 169 0 0 chr3 35475847 35475924 -124123859 + ID_B1 SINE B4 148 224 0 6 855 1115 92 85 17 chr3 35476156 35476332 -124123451 + B2_Mm2 SINE B2 1 188 -7 6 855 1012 97 0 0 chr3 35476351 35476485 -124123298 + B1_Mus1 SINE Alu 3 136 -12 6 855 180 0 0 0 chr3 35476485 35476505 -124123278 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 6 855 288 0 0 0 chr3 35478522 35478554 -124121229 + (CA)n Simple_repeat Simple_repeat 2 33 0 6 855 311 85 34 0 chr3 35479072 35479131 -124120652 + (CAGA)n Simple_repeat Simple_repeat 4 64 0 6 855 2297 149 41 19 chr3 35479145 35479602 -124120181 - RMER6A LTR ERVK 0 756 289 6 855 2872 43 40 6 chr3 35479602 35479955 -124119828 - RLTR10B2 LTR ERVK 0 365 1 6 855 4353 136 13 3 chr3 35479962 35480634 -124119149 - IAPEY3-int LTR ERVK -7 7673 6995 6 855 1574 96 100 0 chr3 35480638 35480867 -124118916 - IAP-d-int LTR ERVK -1287 5255 5004 6 855 500 315 43 43 chr3 35480879 35481274 -124118509 - RLTR10-int LTR ERVK -6015 1566 1172 6 855 2872 50 124 0 chr3 35481299 35481679 -124118104 - RLTR10-int LTR ERVK -995 992 566 6 855 434 107 34 43 chr3 35481679 35481796 -124117987 + CT-rich Low_complexity Low_complexity 3 118 0 6 855 1277 85 6 22 chr3 35481893 35482074 -124117709 - RLTR10-int LTR ERVK -7403 178 1 6 855 2831 43 40 8 chr3 35482074 35482428 -124117355 - RLTR10B2 LTR ERVK 0 365 1 6 855 1600 142 29 0 chr3 35482428 35482656 -124117127 - RMER6A LTR ERVK -467 289 62 6 855 234 0 0 0 chr3 35482656 35482682 -124117101 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 6 855 1600 142 29 0 chr3 35482682 35482734 -124117049 - RMER6A LTR ERVK -695 61 2 6 855 5736 83 26 9 chr3 35482957 35483751 -124116032 + L1Md_F2 LINE L1 5775 6582 0 6 855 528 269 35 56 chr3 35483761 35483958 -124115825 + B3A SINE B2 1 193 -5 6 855 441 365 97 9 chr3 35484068 35484389 -124115394 + L1MEg LINE L1 859 1207 -4877 6 855 21 0 0 0 chr3 35485345 35485366 -124114417 + AT_rich Low_complexity Low_complexity 1 21 0 6 855 319 281 153 29 chr3 35485631 35485840 -124113943 + L1MEg LINE L1 1090 1324 -4760 6 855 523 240 174 28 chr3 35485888 35486280 -124113503 - RLTR12B LTR ERVK -39 320 7 6 855 489 312 29 12 chr3 35486292 35486532 -124113251 + L1MEg LINE L1 1367 1610 -4474 6 855 326 328 14 21 chr3 35486549 35486689 -124113094 + B1_Mm SINE Alu 4 142 -5 6 855 559 73 36 18 chr3 35486727 35486839 -124112944 + (TAGA)n Simple_repeat Simple_repeat 4 117 0 6 855 390 372 70 0 chr3 35486937 35487109 -124112674 + MER5A DNA MER1_type 6 189 0 6 855 23 54 0 0 chr3 35487180 35487217 -124112566 + AT_rich Low_complexity Low_complexity 1 37 0 6 855 2346 145 164 70 chr3 35487416 35488046 -124111737 - RMER6C LTR ERVK 0 690 2 6 855 1491 228 119 31 chr3 35488047 35488491 -124111292 + RMER15 LTR ERVL 50 532 -43 6 855 339 25 0 0 chr3 35488651 35488691 -124111092 + (CA)n Simple_repeat Simple_repeat 1 40 0 6 855 4797 148 33 58 chr3 35488737 35489238 -124110545 + L1Md_F2 LINE L1 273 770 -5954 6 855 3496 35 0 0 chr3 35489238 35489634 -124110149 + MTA_Mm LTR MaLR 1 396 0 6 855 32320 78 15 20 chr3 35489634 35492559 -124107224 + L1Md_F2 LINE L1 749 3656 -2227 6 855 3205 11 0 0 chr3 35492559 35492917 -124106866 + L1Md_T LINE L1 6225 6582 0 6 855 32320 70 12 14 chr3 35492917 35494838 -124104945 + L1Md_F2 LINE L1 3657 5587 -296 6 855 7465 82 3 7 chr3 35494839 35495833 -124103950 + L1Md_F2 LINE L1 5589 6578 -4 6 855 387 293 100 85 chr3 35495998 35496338 -124103445 + L1MD3 LINE L1 6311 6655 -1130 6 855 1164 184 297 3 chr3 35496338 35496681 -124103102 - MT2B LTR ERVL -157 444 1 6 855 368 279 7 60 chr3 35496681 35496830 -124102953 + Lx6 LINE L1 7294 7434 -26 6 855 8412 64 5 1 chr3 35496862 35498092 -124101691 - L1_Mus3 LINE L1 0 6638 5403 6 855 288 0 0 0 chr3 35498159 35498191 -124101592 + (A)n Simple_repeat Simple_repeat 1 32 0 6 855 396 236 148 37 chr3 35498332 35498521 -124101262 + L1MD3 LINE L1 6902 7118 -764 6 855 278 242 0 16 chr3 35498865 35498928 -124100855 + B3A SINE B2 53 114 -84 6 855 1343 251 40 5 chr3 35498935 35499312 -124100471 + L1_Mur3 LINE L1 28 417 -7295 6 855 3877 85 20 3 chr3 35499310 35500000 -124099783 + Lx3A LINE L1 5467 6179 -802 6 855 5575 103 15 6 chr3 35500000 35500791 -124098992 + Lx3A LINE L1 6180 6977 -4 1 855 7251 155 55 9 chr3 35500804 35502013 -124097770 + L1_Mur3 LINE L1 3403 4660 -1220 2 855 540 45 0 0 chr3 35502013 35502080 -124097703 + (GAGAA)n Simple_repeat Simple_repeat 4 70 0 3 855 7251 155 55 9 chr3 35502080 35502243 -124097540 + L1_Mur3 LINE L1 4661 4837 -1043 2 855 434 185 32 11 chr3 35502240 35502319 -124097464 + Lx7 LINE L1 6812 6892 -804 4 855 753 12 0 0 chr3 35502319 35502405 -124097378 + (CA)n Simple_repeat Simple_repeat 2 87 0 5 855 434 185 32 11 chr3 35502405 35502418 -124097365 + Lx7 LINE L1 6893 6905 -791 4 855 303 85 0 0 chr3 35502418 35502465 -124097318 + (GA)n Simple_repeat Simple_repeat 2 48 0 6 855 1607 255 85 5 chr3 35502465 35502875 -124096908 + Lx6 LINE L1 6841 7283 -177 7 855 258 371 0 0 chr3 35502912 35502974 -124096809 + B3A SINE B2 99 160 -38 8 855 435 38 0 0 chr3 35502979 35503032 -124096751 + (CA)n Simple_repeat Simple_repeat 1 53 0 9 855 2012 202 49 23 chr3 35503032 35503850 -124095933 + L1_Rod LINE L1 878 1721 -4126 1 855 14271 101 7 3 chr3 35503851 35506207 -124093576 - L1_Mus2 LINE L1 -448 6118 3755 1 855 38511 41 3 13 chr3 35506206 35512375 -124087408 - L1Md_T LINE L1 0 6582 484 1 855 8795 123 12 0 chr3 35512373 35513752 -124086031 - L1_Mus2 LINE L1 -2116 3767 2373 1 855 2381 99 11 16 chr3 35513773 35514152 -124085631 + MusHAL1 LINE L1 542 918 -1794 1 855 2230 99 29 3 chr3 35514144 35514487 -124085296 + MusHAL1 LINE L1 2002 2353 -359 1 855 5001 141 5 9 chr3 35514489 35515470 -124084313 + L1_Mus3 LINE L1 5022 6009 -573 1 855 3249 35 2 37 chr3 35515470 35515810 -124083973 + MTA_Mm LTR MaLR 1 340 -56 1 855 1453 78 5 0 chr3 35515810 35516003 -124083780 + B2_Mm2 SINE B2 2 195 0 1 855 3249 35 2 37 chr3 35516003 35516072 -124083711 + MTA_Mm LTR MaLR 341 396 0 1 855 2779 188 19 18 chr3 35516072 35516139 -124083644 + L1_Mus3 LINE L1 6004 6071 -511 1 855 3580 95 4 10 chr3 35516404 35516904 -124082879 + L1_Mus3 LINE L1 6115 6611 -27 1 855 321 379 79 22 chr3 35516935 35517202 -124082581 + MTE2a LTR MaLR 83 364 -15 1 855 234 105 0 0 chr3 35518318 35518356 -124081427 + (TATG)n Simple_repeat Simple_repeat 2 39 0 1 855 843 329 35 43 chr3 35520114 35520483 -124079300 + ORR1D2 LTR MaLR 1 366 -4 1 106 1131 279 74 34 chr3 35520476 35520855 -124078928 + MTD LTR MaLR 26 419 0 2 856 21 0 0 0 chr3 35520957 35520978 -124078805 + AT_rich Low_complexity Low_complexity 1 21 0 2 856 220 220 0 0 chr3 35520984 35521034 -124078749 + T-rich Low_complexity Low_complexity 1 50 0 2 856 386 252 24 16 chr3 35521049 35521174 -124078609 - RMER1B Other Other -16 1050 925 2 856 222 176 0 0 chr3 35521492 35521543 -124078240 + (TA)n Simple_repeat Simple_repeat 2 52 0 2 856 205 205 0 0 chr3 35521789 35521828 -124077955 + A-rich Low_complexity Low_complexity 1 39 0 2 856 371 325 147 19 chr3 35522402 35522559 -124077224 - B3 SINE B2 -37 179 3 2 856 250 325 13 0 chr3 35523018 35523095 -124076688 - B1F SINE Alu -54 95 18 2 856 722 212 128 6 chr3 35523469 35523649 -124076134 + URR1A DNA MER1_type 1 202 -24 2 856 280 259 90 41 chr3 35523547 35523692 -124076091 - CYRA11_Mm Unknown Y-chromosome -317 300 149 2 856 1269 151 4 26 chr3 35523692 35523924 -124075859 - RLTR45-int LTR ERVK -1377 5867 5641 3 856 594 186 54 17 chr3 35523933 35524104 -124075679 + RLTR13D4 LTR ERVK 900 1114 0 3 856 1960 237 39 7 chr3 35524392 35524855 -124074928 + Lx4B LINE L1 6501 6978 -80 3 856 219 114 0 0 chr3 35524880 35524915 -124074868 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 3 856 222 211 0 0 chr3 35524921 35524978 -124074805 + A-rich Low_complexity Low_complexity 1 57 0 3 856 22 0 0 0 chr3 35528024 35528046 -124071737 + AT_rich Low_complexity Low_complexity 1 22 0 3 856 483 278 8 25 chr3 35528372 35528490 -124071293 + B1_Mur4 SINE Alu 14 129 -21 3 856 2754 101 10 15 chr3 35528703 35529114 -124070669 - RLTR9E LTR ERVK 0 409 1 3 856 475 110 26 23 chr3 35529114 35529202 -124070581 - ETnERV2-int LTR ERVK 0 7406 7331 3 856 19777 174 81 69 chr3 35529399 35531672 -124068111 - ETnERV2-int LTR ERVK -977 6429 4213 3 856 3738 52 21 2 chr3 35531672 35532138 -124067645 + MT2C_Mm LTR ERVL 1 475 0 3 856 19777 176 83 71 chr3 35532138 35534901 -124064882 - ETnERV2-int LTR ERVK -3194 4212 1356 3 856 3075 24 82 0 chr3 35534901 35535281 -124064502 + IAPLTR2a LTR ERVK 1 411 0 4 856 19777 176 83 71 chr3 35535281 35535536 -124064247 - ETnERV2-int LTR ERVK -6051 1355 1071 3 856 1379 215 45 50 chr3 35535552 35535934 -124063849 - ETnERV2-int LTR ERVK -2933 381 2 3 856 2565 109 39 8 chr3 35535947 35536335 -124063448 - RLTR9E LTR ERVK -4 405 6 3 856 465 302 42 69 chr3 35536972 35537189 -124062594 + MTEb LTR MaLR 22 232 -147 4 856 2601 68 3 37 chr3 35537655 35538034 -124061749 + L1Md_F2 LINE L1 6212 6577 -5 4 856 1123 296 86 57 chr3 35539489 35540276 -124059507 + Lx9 LINE L1 6816 7625 -19 4 856 432 0 0 0 chr3 35542243 35542291 -124057492 + (TA)n Simple_repeat Simple_repeat 2 49 0 4 856 12537 53 0 0 chr3 35542341 35543901 -124055882 + L1Md_F2 LINE L1 4027 5586 -297 4 856 8117 47 2 1 chr3 35543901 35544896 -124054887 + L1Md_F2 LINE L1 5587 6582 0 4 856 239 222 0 0 chr3 35547116 35547170 -124052613 + RMER4A LTR ERVK 25 78 -388 4 856 525 287 14 7 chr3 35547175 35547319 -124052464 - B3 SINE B2 -11 205 61 4 856 298 273 29 7 chr3 35548637 35548777 -124051006 + (CAGAGA)n Simple_repeat Simple_repeat 4 146 0 4 856 486 0 0 0 chr3 35548783 35548837 -124050946 + (TAGA)n Simple_repeat Simple_repeat 3 56 0 4 856 1084 112 6 11 chr3 35549094 35549275 -124050508 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 5 856 186 176 0 0 chr3 35550149 35550200 -124049583 + A-rich Low_complexity Low_complexity 1 51 0 5 856 881 113 6 0 chr3 35550752 35550911 -124048872 + (TG)n Simple_repeat Simple_repeat 2 161 0 5 856 256 196 18 0 chr3 35551171 35551227 -124048556 + (CA)n Simple_repeat Simple_repeat 2 58 0 5 856 5862 53 0 1 chr3 35551600 35552331 -124047452 + L1Md_F2 LINE L1 4857 5586 -297 5 856 7963 48 2 8 chr3 35552331 35553332 -124046451 + L1Md_F2 LINE L1 5587 6581 -1 5 856 1122 88 0 0 chr3 35554649 35554796 -124044987 - B1_Mus1 SINE Alu 0 148 2 5 856 236 328 0 0 chr3 35555136 35555200 -124044583 + BC1_Mm scRNA scRNA 12 75 -77 5 856 3160 154 46 16 chr3 35556246 35556812 -124042971 + MT2B LTR ERVL 18 600 -1 5 856 2602 187 24 8 chr3 35558299 35558794 -124040989 + RLTR20D LTR ERVK 1 503 -65 5 856 21 82 0 0 chr3 35559902 35559951 -124039832 + AT_rich Low_complexity Low_complexity 1 49 0 5 856 681 56 0 0 chr3 35560355 35560445 -124039338 + (TG)n Simple_repeat Simple_repeat 1 90 0 6 856 30 0 0 0 chr3 35561392 35561422 -124038361 + AT_rich Low_complexity Low_complexity 1 30 0 6 856 21 0 0 0 chr3 35562172 35562193 -124037590 + AT_rich Low_complexity Low_complexity 1 21 0 6 856 3710 20 2 0 chr3 35562872 35563267 -124036516 - MTA_Mm LTR MaLR 0 396 1 6 856 33 0 0 0 chr3 35563472 35563505 -124036278 + AT_rich Low_complexity Low_complexity 1 33 0 6 856 234 91 55 0 chr3 35564725 35564780 -124035003 + (TA)n Simple_repeat Simple_repeat 2 59 0 6 856 7355 60 12 16 chr3 35565399 35566303 -124033480 + L1Md_F2 LINE L1 5671 6571 -11 6 856 829 213 10 74 chr3 35566413 35566457 -124033326 - L1_Mm LINE L1 -1394 4453 4419 6 856 680 135 7 73 chr3 35566457 35566593 -124033190 + L1_Mus2 LINE L1 6422 6548 -18 6 856 829 114 7 48 chr3 35566593 35566719 -124033064 - L1_Mm LINE L1 -1451 4432 4309 6 856 7354 93 60 0 chr3 35566721 35567796 -124031987 - MusHAL1 LINE L1 -285 2427 1288 6 856 4599 151 45 37 chr3 35567795 35568387 -124031396 + L1VL2 LINE L1 180 799 -5536 7 856 1240 62 0 0 chr3 35568387 35568533 -124031250 + B1_Mm SINE Alu 2 147 0 7 856 8871 93 20 8 chr3 35568533 35569939 -124029844 + L1VL2 LINE L1 800 2197 -1418 7 856 730 291 29 26 chr3 35570708 35571018 -124028765 - RLTR15 LTR ERVK -32 327 17 7 856 3180 190 50 124 chr3 35571031 35572064 -124027719 + Lx9 LINE L1 4715 5671 -176 7 856 2011 183 79 35 chr3 35572088 35572279 -124027504 + MT2B LTR ERVL 1 339 -262 7 856 912 8 0 25 chr3 35572279 35572399 -124027384 + (TTC)n Simple_repeat Simple_repeat 1 117 0 7 856 2011 154 61 25 chr3 35572399 35572594 -124027189 + MT2B LTR ERVL 340 545 -56 7 856 423 0 0 0 chr3 35572594 35572641 -124027142 + (CA)n Simple_repeat Simple_repeat 2 48 0 7 856 2011 154 61 25 chr3 35572641 35572698 -124027085 + MT2B LTR ERVL 546 600 -1 7 856 1009 251 97 19 chr3 35572699 35573072 -124026711 + Lx9 LINE L1 5713 6114 -1530 7 856 6604 196 27 2 chr3 35573094 35574314 -124025469 + Lx9 LINE L1 6388 7637 -7 7 856 853 133 23 20 chr3 35574647 35575000 -124024783 + (TAGA)n Simple_repeat Simple_repeat 1 354 0 7 856 362 243 93 8 chr3 35575103 35575377 -124024406 - L1MC LINE L1 -2793 3353 3057 7 856 269 342 86 55 chr3 35575392 35575754 -124024029 + L1M5 LINE L1 4000 4372 -1774 7 856 399 299 157 0 chr3 35575754 35575888 -124023895 + RSINE1 SINE B4 3 157 -8 8 856 378 0 0 0 chr3 35575891 35575933 -124023850 + (CATA)n Simple_repeat Simple_repeat 4 45 0 8 856 299 258 50 8 chr3 35576220 35576341 -124023442 + L1M5 LINE L1 4380 4505 -1641 7 856 1951 197 11 19 chr3 35576507 35576880 -124022903 - ORR1C1 LTR MaLR -8 370 1 8 856 457 331 24 43 chr3 35577345 35577646 -124022137 + RMER15 LTR ERVL 6 421 -154 8 856 240 35 0 0 chr3 35577647 35577676 -124022107 + (CA)n Simple_repeat Simple_repeat 1 29 0 8 856 735 12 0 0 chr3 35577969 35578053 -124021730 + (TC)n Simple_repeat Simple_repeat 1 84 0 8 856 180 0 0 0 chr3 35578053 35578072 -124021711 + (CA)n Simple_repeat Simple_repeat 1 20 0 8 856 237 65 0 0 chr3 35578079 35578110 -124021673 + (GGGAGA)n Simple_repeat Simple_repeat 1 31 0 8 856 214 64 41 41 chr3 35578119 35578168 -124021615 + (CAGA)n Simple_repeat Simple_repeat 2 50 0 8 856 1401 220 136 21 chr3 35578511 35578850 -124020933 - ORR1C1 LTR MaLR 0 378 1 8 856 260 297 75 57 chr3 35578996 35579275 -124020508 - L1M4 LINE L1 -3537 2609 2326 9 856 700 168 0 19 chr3 35579389 35579702 -124020081 + (TG)n Simple_repeat Simple_repeat 1 306 0 9 856 452 214 6 17 chr3 35579746 35579922 -124019861 + (TG)n Simple_repeat Simple_repeat 1 174 0 9 856 231 250 0 22 chr3 35579936 35580071 -124019712 + (TG)n Simple_repeat Simple_repeat 1 132 0 9 856 239 239 219 60 chr3 35580071 35580222 -124019561 - Lx8 LINE L1 -1 7472 7298 9 856 1112 138 48 5 chr3 35580612 35580801 -124018982 + MTD LTR MaLR 1 197 -222 9 856 1186 75 7 0 chr3 35581310 35581456 -124018327 - B1_Mus2 SINE Alu 0 147 1 9 856 273 321 44 44 chr3 35582413 35582618 -124017165 + L1M2 LINE L1 5410 5614 -686 9 856 1418 90 0 0 chr3 35582619 35582796 -124016987 + B2_Mm2 SINE B2 1 177 -18 9 856 474 312 94 0 chr3 35582970 35583098 -124016685 + ID_B1 SINE B4 81 220 -4 9 856 2993 206 81 26 chr3 35584351 35585029 -124014754 + Lx7 LINE L1 6041 6755 -941 9 856 1180 158 119 0 chr3 35585030 35585232 -124014551 + URR1A DNA MER1_type 1 226 0 9 856 653 262 33 23 chr3 35586113 35586313 -124013470 + B3A SINE B2 2 187 -8 1 856 602 289 0 8 chr3 35586327 35586456 -124013327 + B1F2 SINE Alu 6 133 -16 1 856 465 120 0 0 chr3 35586837 35586929 -124012854 + (TC)n Simple_repeat Simple_repeat 2 93 0 1 856 279 317 113 0 chr3 35587109 35587251 -124012532 + MIRb SINE MIR 95 252 -16 1 856 524 282 22 61 chr3 35587306 35587487 -124012296 + MIR SINE MIR 29 202 -60 1 856 1632 177 41 19 chr3 35588171 35588488 -124011295 + Lx9 LINE L1 7316 7639 -5 1 856 745 289 19 56 chr3 35588639 35588855 -124010928 + ID_B1 SINE B4 13 220 -4 1 856 620 77 11 0 chr3 35588856 35588947 -124010836 + (GGGA)n Simple_repeat Simple_repeat 1 92 0 1 856 423 0 0 0 chr3 35589121 35589168 -124010615 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 856 479 189 61 76 chr3 35589387 35589519 -124010264 + RodERV21-int LTR ERV1 36 165 -4826 1 856 571 216 124 31 chr3 35590274 35590403 -124009380 - B1_Mur1 SINE Alu -7 142 2 1 856 279 0 0 0 chr3 35590705 35590736 -124009047 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 1 856 209 273 0 0 chr3 35591002 35591046 -124008737 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 856 3325 27 21 0 chr3 35591540 35591914 -124007869 + L1Md_F2 LINE L1 6201 6582 0 1 856 708 224 80 26 chr3 35592086 35592237 -124007546 - B3A SINE B2 -38 160 2 1 856 519 326 74 37 chr3 35593260 35593502 -124006281 + MER34A LTR ERV1 24 274 -297 1 856 307 293 194 8 chr3 35593867 35593991 -124005792 - B3 SINE B2 -65 151 5 1 856 722 253 40 6 chr3 35594143 35594318 -124005465 + B4A SINE B4 49 229 -63 1 856 469 283 0 9 chr3 35594320 35594434 -124005349 + PB1D10 SINE Alu 3 115 -2 1 856 200 320 0 0 chr3 35594452 35594502 -124005281 + polypurine Low_complexity Low_complexity 2 51 0 1 856 457 244 87 0 chr3 35595040 35595155 -124004628 - RMER30 DNA MER1_type -76 126 2 1 856 454 45 60 0 chr3 35597028 35597095 -124002688 + B1_Mur4 SINE Alu 80 150 0 1 856 1207 242 218 49 chr3 35597335 35597731 -124002052 + RMER15 LTR ERVL 3 460 -115 1 856 2140 127 44 6 chr3 35597731 35598047 -124001736 - ORR1A4 LTR MaLR 0 329 2 1 856 1207 242 218 49 chr3 35598047 35598140 -124001643 + RMER15 LTR ERVL 461 575 0 1 856 1024 255 37 4 chr3 35598920 35599190 -124000593 + ORR1D1 LTR MaLR 11 259 -115 1 856 3545 36 8 0 chr3 35599191 35599584 -124000199 + MTB LTR MaLR 2 397 -3 1 856 1239 61 7 0 chr3 35599584 35599731 -124000052 + B1_Mus1 SINE Alu 1 148 0 1 856 673 225 50 0 chr3 35599764 35599924 -123999859 + ORR1D1 LTR MaLR 215 382 -2 1 856 926 246 18 131 chr3 35600532 35600860 -123998923 + B4A SINE B4 2 292 0 1 856 272 222 8 38 chr3 35600879 35601010 -123998773 + (CATA)n Simple_repeat Simple_repeat 4 130 0 1 856 224 333 0 0 chr3 35601010 35601076 -123998707 + (CA)n Simple_repeat Simple_repeat 1 66 0 1 856 2179 40 0 23 chr3 35601643 35601899 -123997884 - L1_Mus1 LINE L1 0 6567 6318 1 856 189 0 0 0 chr3 35602813 35602834 -123996949 + (GA)n Simple_repeat Simple_repeat 1 21 0 1 856 207 0 0 0 chr3 35602834 35602856 -123996927 + (TG)n Simple_repeat Simple_repeat 1 23 0 1 856 220 156 0 0 chr3 35602861 35602893 -123996890 + ID4 SINE ID 13 44 -39 1 856 1218 183 19 15 chr3 35603525 35603730 -123996053 - B3 SINE B2 -10 206 1 1 856 741 219 31 129 chr3 35604279 35604504 -123995279 - B3 SINE B2 -12 204 2 1 856 348 24 0 0 chr3 35604505 35604546 -123995237 + (TTCC)n Simple_repeat Simple_repeat 3 43 0 1 856 289 317 75 0 chr3 35604587 35604707 -123995076 + MER58B DNA MER1_type 176 304 -37 1 856 4577 89 5 28 chr3 35604827 35605428 -123994355 + LTRIS_Mus LTR ERV1 1 587 0 1 856 2996 131 18 10 chr3 35605453 35605946 -123993837 - L1_Mur3 LINE L1 -2224 3656 3160 1 856 4698 12 2 0 chr3 35605946 35606438 -123993345 + MT2_Mm LTR ERVL 1 493 0 1 856 48240 16 6 1 chr3 35606438 35611769 -123988014 + MERVL-int LTR ERVL 1 5360 -125 1 856 362 167 46 35 chr3 35611769 35611856 -123987927 + ORR1A3-int LTR MaLR 553 640 -1323 1 856 321 0 0 0 chr3 35611856 35611894 -123987889 + MERVL-int LTR ERVL 5448 5485 0 1 856 4492 12 2 0 chr3 35611894 35612386 -123987397 + MT2_Mm LTR ERVL 1 493 0 1 856 5207 179 79 41 chr3 35612386 35612646 -123987137 - L1_Mur3 LINE L1 -2716 3164 2879 1 856 243 0 0 0 chr3 35612646 35612673 -123987110 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 856 1184 43 0 0 chr3 35612673 35612812 -123986971 - B1_Mus2 SINE Alu -8 139 1 1 856 5207 179 79 41 chr3 35612812 35613858 -123985925 - L1_Mur3 LINE L1 -3002 2878 1809 1 856 537 264 0 7 chr3 35613926 35614075 -123985708 + L1_Mur2 LINE L1 274 421 -6291 1 856 7372 122 9 35 chr3 35614063 35614334 -123985449 + Lx4B LINE L1 4749 5025 -852 1 856 2778 92 22 32 chr3 35614334 35614738 -123985045 - MTB LTR MaLR 0 400 1 1 856 7372 122 9 35 chr3 35614738 35614985 -123984798 + Lx4B LINE L1 5026 5271 -606 1 856 2029 125 6 71 chr3 35614985 35615337 -123984446 - ORR1A4 LTR MaLR 0 329 1 1 856 7372 122 9 35 chr3 35615337 35615524 -123984259 + Lx4B LINE L1 5272 5453 -424 1 856 1079 69 20 20 chr3 35615524 35615672 -123984111 + B1_Mus1 SINE Alu 1 148 0 1 856 8008 128 32 42 chr3 35615672 35616511 -123983272 + Lx4B LINE L1 5454 6267 -791 1 856 1857 100 106 7 chr3 35616511 35616804 -123982979 - RLTRETN_Mm LTR ERVK 0 322 1 1 856 8008 135 58 50 chr3 35616804 35617540 -123982243 + Lx4B LINE L1 6268 7029 -29 1 856 3072 197 79 54 chr3 35617550 35618749 -123981034 - L1_Mur3 LINE L1 -4066 1811 572 1 856 587 263 115 50 chr3 35618831 35619031 -123980752 + ID_B1 SINE B4 1 213 -11 1 856 1148 96 0 5 chr3 35620248 35620458 -123979325 + (TTTC)n Simple_repeat Simple_repeat 1 209 0 1 856 225 154 0 0 chr3 35620458 35620497 -123979286 + CT-rich Low_complexity Low_complexity 3 41 0 1 856 26 64 0 0 chr3 35621629 35621676 -123978107 + AT_rich Low_complexity Low_complexity 1 47 0 1 856 234 62 0 0 chr3 35621749 35621781 -123978002 + (TG)n Simple_repeat Simple_repeat 1 32 0 1 856 368 216 22 11 chr3 35621978 35622067 -123977716 - PB1 SINE Alu -14 113 24 1 856 393 182 26 13 chr3 35622251 35622329 -123977454 + ID2 SINE ID 3 81 -2 1 856 1935 112 132 12 chr3 35622454 35622781 -123977002 - RLTR9A LTR ERVK 0 368 3 1 856 1654 42 0 0 chr3 35623873 35624065 -123975718 - B2_Mm1a SINE B2 -1 192 1 1 856 22 70 0 0 chr3 35625003 35625046 -123974737 + AT_rich Low_complexity Low_complexity 1 43 0 1 856 2938 131 16 70 chr3 35625071 35625157 -123974626 - RLTR20A1 LTR ERVK -13 538 449 1 856 1037 69 13 40 chr3 35625157 35625308 -123974475 + B1_Mus2 SINE Alu 1 147 0 1 856 2938 131 16 70 chr3 35625308 35625328 -123974455 - RLTR20A1 LTR ERVK -103 448 448 1 856 333 0 0 0 chr3 35625328 35625365 -123974418 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 856 2938 131 16 70 chr3 35625365 35625817 -123973966 - RLTR20A1 LTR ERVK -103 448 9 1 856 1965 123 41 41 chr3 35625933 35626271 -123973512 + ORR1B1 LTR MaLR 1 349 -45 1 856 551 25 49 0 chr3 35626271 35626352 -123973431 + L1Md_F3 LINE L1 6500 6584 0 1 856 1965 123 41 41 chr3 35626352 35626402 -123973381 + ORR1B1 LTR MaLR 350 389 -5 1 856 1138 95 0 0 chr3 35626403 35626551 -123973232 + B1_Mus1 SINE Alu 1 148 0 1 856 626 211 0 86 chr3 35627647 35627787 -123971996 + RSINE1 SINE B4 2 129 -36 1 856 225 0 0 0 chr3 35627795 35627820 -123971963 + (TC)n Simple_repeat Simple_repeat 2 26 0 1 856 513 252 8 0 chr3 35628000 35628119 -123971664 + B4A SINE B4 110 229 -63 1 856 648 270 12 8 chr3 35628123 35628321 -123971462 + B3A SINE B2 6 203 -13 1 856 381 205 0 0 chr3 35628374 35628452 -123971331 + B4 SINE B4 215 292 0 1 856 207 217 0 0 chr3 35628452 35628512 -123971271 + (CA)n Simple_repeat Simple_repeat 1 60 0 1 856 1705 153 3 101 chr3 35628551 35628908 -123970875 + RLTRETN_Mm LTR ERVK 1 322 0 1 856 1748 131 23 75 chr3 35629063 35629410 -123970373 - ORR1A4 LTR MaLR 0 329 1 1 856 438 299 35 7 chr3 35630122 35630182 -123969601 - MT2A LTR ERVL -384 149 85 1 856 438 20 0 0 chr3 35630182 35630233 -123969550 + (GAAA)n Simple_repeat Simple_repeat 2 52 0 1 856 756 33 0 0 chr3 35630235 35630326 -123969457 + (GGAAA)n Simple_repeat Simple_repeat 5 95 0 1 856 438 299 35 7 chr3 35630326 35630407 -123969376 - MT2A LTR ERVL -449 84 4 1 856 1125 278 72 60 chr3 35630515 35631017 -123968766 + RCHARR1 DNA MER1_type 59 566 -408 1 856 207 0 0 0 chr3 35631088 35631111 -123968672 + (T)n Simple_repeat Simple_repeat 1 23 0 1 856 1079 76 14 0 chr3 35631133 35631278 -123968505 - B1_Mus2 SINE Alu 0 147 1 1 856 377 204 75 37 chr3 35631308 35631415 -123968368 + B3A SINE B2 12 122 -76 1 856 414 0 0 0 chr3 35631692 35631738 -123968045 + (TG)n Simple_repeat Simple_repeat 1 46 0 1 856 414 0 0 0 chr3 35631738 35631783 -123968000 + (GA)n Simple_repeat Simple_repeat 1 46 0 1 856 2761 204 95 40 chr3 35631788 35632482 -123967301 - Lx5 LINE L1 -17 7033 6302 1 856 3095 150 43 9 chr3 35632477 35633184 -123966599 + Lx5 LINE L1 5462 6212 -838 1 856 4391 142 85 62 chr3 35633185 35634067 -123965716 + RMER19B LTR ERVK 1 902 0 1 856 742 144 0 0 chr3 35634067 35634171 -123965612 + Lx5 LINE L1 6208 6311 -739 1 856 667 133 19 0 chr3 35634294 35634399 -123965384 + U6 snRNA snRNA 1 107 0 1 856 991 139 4 114 chr3 35634401 35634564 -123965219 + L1_Mur3 LINE L1 5226 5368 -512 1 856 3000 60 39 3 chr3 35634564 35634946 -123964837 - MTA_Mm LTR MaLR 0 396 1 1 856 991 139 4 114 chr3 35634946 35635009 -123964774 + L1_Mur3 LINE L1 5369 5427 -453 1 856 564 15 0 0 chr3 35635189 35635254 -123964529 + (TC)n Simple_repeat Simple_repeat 2 66 0 1 856 272 284 172 117 chr3 35637120 35637309 -123962474 - MLT2D LTR ERVL -50 364 166 1 856 3734 113 55 27 chr3 35637309 35637892 -123961891 + MT2B LTR ERVL 3 601 0 1 856 272 284 172 117 chr3 35637892 35637993 -123961790 - MLT2D LTR ERVL -249 165 58 1 856 305 302 106 77 chr3 35638127 35638335 -123961448 + MIR SINE MIR 24 237 -25 1 856 1174 44 0 0 chr3 35638417 35638554 -123961229 - B1_Mm SINE Alu -10 137 1 1 856 286 224 0 0 chr3 35638824 35638891 -123960892 - ORR1D2 LTR MaLR -135 235 169 1 856 279 176 25 86 chr3 35639128 35639209 -123960574 + RLTR9A LTR ERVK 11 86 -282 1 856 388 300 9 0 chr3 35639233 35639343 -123960440 + PB1D9 SINE Alu 5 115 -5 1 856 2047 273 102 34 chr3 35639349 35640023 -123959760 + Lx8 LINE L1 6328 7047 -426 1 856 1056 258 73 17 chr3 35640025 35640325 -123959458 + MTD LTR MaLR 1 317 -102 1 856 6611 183 16 19 chr3 35640327 35641617 -123958166 + Lx2B LINE L1 5649 7053 -5 1 856 346 250 121 8 chr3 35641843 35642017 -123957766 - L1MA6 LINE L1 -43 6257 6050 1 856 351 0 0 0 chr3 35642228 35642267 -123957516 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 2 856 8633 28 8 0 chr3 35642278 35643492 -123956291 - L1Md_F3 LINE L1 -1 6583 5361 2 856 329 331 45 0 chr3 35643620 35643753 -123956030 + RSINE1 SINE B4 3 141 -24 2 856 333 0 0 0 chr3 35643762 35643799 -123955984 + (CA)n Simple_repeat Simple_repeat 1 37 0 2 856 678 215 0 4 chr3 35645025 35645494 -123954289 + (CA)n Simple_repeat Simple_repeat 1 466 0 2 856 417 167 0 0 chr3 35646703 35646781 -123953002 + A-rich Low_complexity Low_complexity 1 78 0 2 856 202 392 66 48 chr3 35647079 35647307 -123952476 - L4 LINE RTE -1400 629 398 2 856 3077 166 59 0 chr3 35647323 35647864 -123951919 - RMER15 LTR ERVL 0 575 3 2 856 619 272 47 7 chr3 35648104 35648252 -123951531 - RSINE1 SINE B4 -10 155 2 2 856 783 153 11 63 chr3 35648332 35648506 -123951277 + URR1B DNA MER1_type 61 225 0 2 856 1626 66 53 24 chr3 35649671 35649918 -123949865 - L1_Mus3 LINE L1 -3 6635 6382 2 856 273 226 16 0 chr3 35650874 35650936 -123948847 - RLTR19C LTR ERVK -409 97 35 2 856 24 0 0 0 chr3 35651063 35651087 -123948696 + AT_rich Low_complexity Low_complexity 1 24 0 2 857 28 0 0 0 chr3 35651808 35651836 -123947947 + AT_rich Low_complexity Low_complexity 1 28 0 2 857 830 62 0 0 chr3 35651858 35651971 -123947812 - B1_Mm SINE Alu -11 136 24 2 857 231 227 16 63 chr3 35652899 35653026 -123946757 + (CGGGG)n Simple_repeat Simple_repeat 3 123 0 2 857 241 220 24 56 chr3 35653270 35653395 -123946388 + (CGG)n Simple_repeat Simple_repeat 1 121 0 2 857 1453 48 26 11 chr3 35654756 35654946 -123944837 + B2_Mm2 SINE B2 2 194 -1 2 857 21 82 0 0 chr3 35655126 35655175 -123944608 + AT_rich Low_complexity Low_complexity 1 49 0 2 857 328 241 35 24 chr3 35655378 35655463 -123944320 - RSINE1 SINE B4 -31 134 49 2 857 189 107 0 0 chr3 35655860 35655888 -123943895 + (TTG)n Simple_repeat Simple_repeat 2 29 0 2 857 251 207 17 0 chr3 35656393 35656451 -123943332 + PB1D10 SINE Alu 10 68 -49 2 857 334 316 21 0 chr3 35657014 35657109 -123942674 + RSINE1 SINE B4 56 152 -13 2 857 24 67 0 0 chr3 35657117 35657162 -123942621 + AT_rich Low_complexity Low_complexity 1 45 0 2 857 1022 82 12 88 chr3 35657260 35657420 -123942363 + B1_Mus1 SINE Alu 1 148 0 2 857 229 182 0 35 chr3 35657482 35657539 -123942244 + (TCTA)n Simple_repeat Simple_repeat 4 58 0 2 857 3884 270 141 69 chr3 35657722 35659457 -123940326 - Lx8 LINE L1 -178 7295 5321 2 857 471 218 57 38 chr3 35659466 35659571 -123940212 - B1_Mur2 SINE Alu -30 119 13 2 857 3884 270 141 69 chr3 35659574 35660020 -123939763 - Lx8 LINE L1 -178 5320 4811 2 857 1417 183 127 36 chr3 35660020 35660383 -123939400 + Lx9 LINE L1 7088 7483 -161 2 857 1583 57 0 0 chr3 35660785 35660977 -123938806 - B2_Mm1a SINE B2 0 193 2 2 857 1020 207 31 4 chr3 35661091 35661319 -123938464 - Lx8 LINE L1 -1051 4829 4596 2 857 883 114 11 0 chr3 35661325 35661500 -123938283 + (TTTC)n Simple_repeat Simple_repeat 2 178 0 2 857 408 181 16 8 chr3 35661523 35661651 -123938132 + CT-rich Low_complexity Low_complexity 2 130 0 2 857 273 160 0 0 chr3 35661716 35661766 -123938017 + ORR1C2 LTR MaLR 335 384 0 2 857 245 266 0 15 chr3 35662219 35662284 -123937499 - L1M4 LINE L1 -571 5669 5606 2 857 621 302 12 42 chr3 35662373 35662539 -123937244 + RSINE1 SINE B4 1 161 -4 2 857 1133 262 67 42 chr3 35662679 35663037 -123936746 - MTE2b LTR MaLR -5 374 8 2 857 666 216 73 13 chr3 35663042 35663192 -123936591 + B3A SINE B2 1 159 -39 2 857 24 32 0 0 chr3 35663216 35663247 -123936536 + AT_rich Low_complexity Low_complexity 1 31 0 2 857 21 57 0 0 chr3 35663522 35663557 -123936226 + AT_rich Low_complexity Low_complexity 1 35 0 2 857 402 143 0 0 chr3 35663983 35664060 -123935723 + (GA)n Simple_repeat Simple_repeat 1 77 0 2 857 375 319 8 8 chr3 35664157 35664277 -123935506 - B4 SINE B4 -171 121 2 2 857 472 202 11 0 chr3 35664322 35664416 -123935367 + RSINE1 SINE B4 3 97 -68 2 857 5288 175 14 39 chr3 35664475 35665558 -123934225 - Lx5 LINE L1 0 7050 5995 2 857 243 308 0 0 chr3 35665558 35665610 -123934173 + RSINE1 SINE B4 95 146 -19 2 857 26 50 0 0 chr3 35665636 35665676 -123934107 + AT_rich Low_complexity Low_complexity 1 40 0 2 857 507 259 80 38 chr3 35665911 35666031 -123933752 - L1M4 LINE L1 -673 5501 5370 2 857 216 0 0 0 chr3 35666031 35666055 -123933728 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 2 857 1109 71 0 0 chr3 35666056 35666197 -123933586 - B1_Mus1 SINE Alu -6 142 2 2 857 507 247 39 52 chr3 35666197 35666365 -123933418 - L1M4 LINE L1 -777 5369 5200 2 857 568 185 41 31 chr3 35666576 35666740 -123933043 - B3 SINE B2 -10 185 28 2 857 339 275 98 15 chr3 35666781 35666914 -123932869 - MTB_Mm LTR MaLR -53 354 211 2 857 16446 113 69 33 chr3 35666939 35668207 -123931576 - Lx LINE L1 -1 6653 5356 2 857 1184 48 0 0 chr3 35668207 35668353 -123931430 - B1_Mm SINE Alu 0 147 2 2 857 16446 141 19 25 chr3 35668353 35669386 -123930397 - Lx LINE L1 -528 5355 4338 2 857 1413 88 16 0 chr3 35669386 35669578 -123930205 - B2_Mm2 SINE B2 0 195 1 2 857 16446 141 19 25 chr3 35669578 35670970 -123928813 - Lx LINE L1 -1546 4337 2931 2 857 1477 124 5 0 chr3 35670966 35671176 -123928607 - L1VL4 LINE L1 -5901 401 191 2 857 216 0 0 0 chr3 35671401 35671425 -123928358 + (T)n Simple_repeat Simple_repeat 1 24 0 2 857 1140 74 0 0 chr3 35671425 35671573 -123928210 - B1_Mus1 SINE Alu 0 148 1 2 857 894 248 46 77 chr3 35672030 35672354 -123927429 + Lx8 LINE L1 7019 7332 -141 2 857 1316 311 37 39 chr3 35672378 35672832 -123926951 + Lx8 LINE L1 6878 7342 -131 2 857 577 262 79 11 chr3 35672832 35673021 -123926762 + B3 SINE B2 3 204 -12 2 857 1316 311 37 39 chr3 35673021 35673155 -123926628 + Lx8 LINE L1 7343 7465 -8 2 857 279 51 0 0 chr3 35673578 35673599 -123926184 + (T)n Simple_repeat Simple_repeat 1 21 0 2 857 1155 75 0 0 chr3 35673599 35673746 -123926037 - B1_Mus2 SINE Alu 0 147 1 2 857 279 51 0 0 chr3 35673746 35673763 -123926020 + (T)n Simple_repeat Simple_repeat 1 17 0 2 857 251 248 73 45 chr3 35674217 35674327 -123925456 - PB1D7 SINE Alu -7 113 1 2 857 321 143 159 0 chr3 35674468 35674531 -123925252 - ID2 SINE ID -1 82 10 2 857 24 0 0 0 chr3 35674551 35674575 -123925208 + AT_rich Low_complexity Low_complexity 1 24 0 2 857 494 237 48 54 chr3 35675173 35675320 -123924463 - RMER10B LTR ERVL -48 350 205 2 857 780 179 49 65 chr3 35675394 35675579 -123924204 - URR1B DNA MER1_type -41 184 3 2 857 1087 242 99 23 chr3 35675659 35675963 -123923820 + ORR1D1 LTR MaLR 48 374 0 2 857 852 206 110 23 chr3 35675999 35676334 -123923449 - MTD LTR MaLR 0 419 1 2 857 650 255 126 53 chr3 35677099 35677306 -123922477 + ID_B1 SINE B4 2 223 -1 2 857 353 263 86 26 chr3 35677879 35677996 -123921787 + MER3 DNA MER1_type 84 207 -2 2 857 2479 258 79 57 chr3 35678433 35679305 -123920478 - Lx9 LINE L1 -165 7479 6589 2 857 180 152 0 0 chr3 35679451 35679484 -123920299 + T-rich Low_complexity Low_complexity 1 33 0 2 857 1051 60 19 38 chr3 35679491 35679648 -123920135 - L1_Mus1 LINE L1 0 6567 6414 2 857 551 202 59 0 chr3 35680129 35680248 -123919535 - B1_Mur2 SINE Alu -6 143 18 2 857 1153 158 69 0 chr3 35680256 35680459 -123919324 - URR1A DNA MER1_type -8 218 2 2 857 689 284 46 0 chr3 35680890 35681084 -123918699 + B3 SINE B2 1 203 -13 2 857 667 249 36 56 chr3 35681097 35681293 -123918490 - B3A SINE B2 -6 192 1 2 857 275 191 148 51 chr3 35681920 35682001 -123917782 + PB1 SINE Alu 20 108 -41 2 857 28 0 0 0 chr3 35682005 35682033 -123917750 + AT_rich Low_complexity Low_complexity 1 28 0 2 857 304 190 12 12 chr3 35682053 35682133 -123917650 + CT-rich Low_complexity Low_complexity 2 81 0 2 857 244 356 67 0 chr3 35682174 35682264 -123917519 - PB1D10 SINE Alu -20 97 2 2 857 343 330 0 57 chr3 35683111 35683233 -123916550 + PB1D10 SINE Alu 1 115 -2 2 857 28 48 0 0 chr3 35683729 35683771 -123916012 + AT_rich Low_complexity Low_complexity 1 42 0 2 857 2648 224 111 16 chr3 35684681 35685321 -123914462 - Lx7 LINE L1 -686 7010 6310 2 857 31 0 0 0 chr3 35685352 35685383 -123914400 + AT_rich Low_complexity Low_complexity 1 31 0 2 857 27 29 0 0 chr3 35685439 35685473 -123914310 + AT_rich Low_complexity Low_complexity 1 34 0 2 857 1988 179 209 17 chr3 35685839 35686426 -123913357 - Lx9 LINE L1 -8 7636 6937 2 857 26 50 0 0 chr3 35686588 35686628 -123913155 + AT_rich Low_complexity Low_complexity 1 40 0 2 857 220 292 77 0 chr3 35687181 35687246 -123912537 + ID4_ SINE ID 12 81 -2 2 857 662 322 48 4 chr3 35687626 35687897 -123911886 + B4A SINE B4 2 284 -8 2 857 370 284 37 0 chr3 35688098 35688179 -123911604 - PB1D7 SINE Alu -36 84 1 2 857 27 62 0 0 chr3 35688680 35688728 -123911055 + AT_rich Low_complexity Low_complexity 1 48 0 2 857 628 293 19 13 chr3 35688831 35688990 -123910793 - RSINE1 SINE B4 0 165 6 2 857 877 286 50 0 chr3 35689187 35689446 -123910337 - B4A SINE B4 -18 274 3 2 857 373 209 12 32 chr3 35689587 35689695 -123910088 - MTD LTR MaLR 0 419 274 2 857 7185 109 24 5 chr3 35689724 35691120 -123908663 - Lx LINE L1 -3 6651 5228 2 857 9661 135 15 1 chr3 35691123 35692675 -123907108 + L1_Mur2 LINE L1 3627 5199 -678 2 857 736 198 116 11 chr3 35692677 35692866 -123906917 - MTD LTR MaLR -208 211 3 2 857 309 287 20 78 chr3 35693324 35693426 -123906357 + B3 SINE B2 113 208 -8 2 857 252 0 0 0 chr3 35693651 35693679 -123906104 + (GTTTG)n Simple_repeat Simple_repeat 2 29 0 2 857 1160 55 0 7 chr3 35693679 35693826 -123905957 - B1_Mus1 SINE Alu -2 146 1 2 857 267 314 106 78 chr3 35694208 35694453 -123905330 + B4A SINE B4 1 252 -40 3 857 708 98 0 0 chr3 35694474 35694576 -123905207 + (TG)n Simple_repeat Simple_repeat 1 102 0 3 857 218 175 53 0 chr3 35695576 35695633 -123904150 + (TATATG)n Simple_repeat Simple_repeat 1 60 0 3 857 1299 94 39 0 chr3 35695664 35695845 -123903938 - B2_Mm2 SINE B2 -7 188 1 3 857 21 57 0 0 chr3 35696811 35696846 -123902937 + AT_rich Low_complexity Low_complexity 1 35 0 3 857 862 224 15 15 chr3 35696919 35697123 -123902660 - B3 SINE B2 -11 205 2 3 857 1174 55 0 0 chr3 35697192 35697338 -123902445 - B1_Mus2 SINE Alu 0 147 2 3 857 393 321 71 32 chr3 35698156 35698439 -123901344 + L1MB5 LINE L1 5881 6174 0 3 857 813 227 113 0 chr3 35699555 35699740 -123900043 + B3 SINE B2 1 206 -10 3 857 841 315 72 10 chr3 35699893 35700162 -123899621 + B4A SINE B4 6 292 0 3 857 300 154 0 0 chr3 35700192 35700244 -123899539 + (CA)n Simple_repeat Simple_repeat 1 52 0 3 857 310 228 9 37 chr3 35700250 35700329 -123899454 + PB1D10 SINE Alu 12 89 -60 3 857 243 325 0 81 chr3 35700268 35700355 -123899428 + ID_B1 SINE B4 109 188 -36 3 857 305 379 64 61 chr3 35700433 35700776 -123899007 + L1MEb LINE L1 276 619 -5451 3 857 371 268 219 38 chr3 35700964 35701342 -123898441 + L1MD2 LINE L1 5106 5551 -691 3 857 337 304 48 0 chr3 35701376 35701501 -123898282 + L1MD2 LINE L1 5881 6011 -348 3 857 872 224 61 5 chr3 35701529 35701726 -123898057 + B3 SINE B2 9 216 0 3 857 752 224 7 0 chr3 35701755 35701902 -123897881 - B1_Mur2 SINE Alu 0 149 2 3 857 216 222 0 0 chr3 35701920 35701992 -123897791 + (TA)n Simple_repeat Simple_repeat 1 72 0 3 857 1048 113 0 0 chr3 35702715 35702856 -123896927 - B1_Mus1 SINE Alu -7 141 1 3 857 1769 274 88 36 chr3 35703219 35703490 -123896293 - Lx9 LINE L1 -181 7463 7179 3 857 3088 142 78 9 chr3 35703490 35704025 -123895758 - RMER15 LTR ERVL 0 575 4 3 857 1769 274 88 36 chr3 35704025 35704479 -123895304 - Lx9 LINE L1 -466 7178 6700 3 857 23 54 0 0 chr3 35704501 35704538 -123895245 + AT_rich Low_complexity Low_complexity 1 37 0 3 857 21 0 0 0 chr3 35706064 35706085 -123893698 + AT_rich Low_complexity Low_complexity 1 21 0 3 857 372 324 67 56 chr3 35706152 35706332 -123893451 + B3A SINE B2 1 182 -16 3 857 216 0 0 0 chr3 35706349 35706373 -123893410 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 3 857 993 46 0 0 chr3 35706373 35706503 -123893280 - B1_Mus1 SINE Alu -13 135 6 3 857 506 206 54 87 chr3 35706503 35706522 -123893261 - B4 SINE B4 -79 213 70 3 857 799 154 7 68 chr3 35706952 35707098 -123892685 + B1_Mur2 SINE Alu 3 139 -10 3 857 245 339 0 0 chr3 35707101 35707163 -123892620 - PB1 SINE Alu -47 80 19 3 857 808 235 189 32 chr3 35707346 35707716 -123892067 - L1M4 LINE L1 -1827 4319 3892 3 857 259 97 23 6 chr3 35707839 35707888 -123891895 - L1MC LINE L1 -2417 3729 3682 3 857 307 309 15 0 chr3 35709680 35709748 -123890035 + MER58C DNA MER1_type 2 70 -145 3 857 341 260 13 0 chr3 35710174 35710251 -123889532 - ID4 SINE ID -2 81 4 3 857 202 171 24 0 chr3 35710680 35710721 -123889062 + MIRb SINE MIR 48 89 -179 3 857 781 247 148 31 chr3 35711906 35712257 -123887526 + L1MB7 LINE L1 5637 6028 -156 3 857 197 119 24 0 chr3 35713174 35713216 -123886567 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 3 857 678 132 0 19 chr3 35713218 35713326 -123886457 - B2_Mm2 SINE B2 -89 106 1 3 857 18950 132 25 4 chr3 35713387 35717677 -123882106 + L1_Mus3 LINE L1 395 6638 0 3 857 319 289 50 50 chr3 35719139 35719259 -123880524 - B3 SINE B2 -5 211 92 3 857 1111 278 61 28 chr3 35719272 35719849 -123879934 - L1_Mur3 LINE L1 -1039 4841 4246 3 857 7470 134 35 15 chr3 35720481 35722107 -123877676 - Lx3C LINE L1 -27 6949 5292 3 857 4497 153 30 32 chr3 35722112 35722976 -123876807 - Lx2B LINE L1 -5 6995 6134 3 857 1200 248 134 5 chr3 35723112 35723747 -123876036 - Lx8 LINE L1 -326 7147 6431 3 857 769 279 109 10 chr3 35723766 35724019 -123875764 - ORR1D2 LTR MaLR -64 295 1 3 857 471 167 219 0 chr3 35724019 35724133 -123875650 - ORR1D2-int LTR MaLR 0 1370 1232 3 857 2586 73 22 22 chr3 35724154 35724520 -123875263 - L1_Mus4 LINE L1 -7 6629 6264 3 857 714 217 38 0 chr3 35724536 35724693 -123875090 - ORR1D2-int LTR MaLR -1155 215 53 3 857 351 60 0 0 chr3 35724693 35724743 -123875040 + (A)n Simple_repeat Simple_repeat 1 50 0 3 857 249 294 0 0 chr3 35724743 35724811 -123874972 - ORR1D2-int LTR MaLR -1301 69 2 3 857 595 273 29 54 chr3 35724812 35724957 -123874826 - ORR1D2 LTR MaLR 0 370 224 3 857 1131 68 7 0 chr3 35724957 35725103 -123874680 + B1_Mus1 SINE Alu 2 148 0 3 857 595 273 29 54 chr3 35725103 35725162 -123874621 - ORR1D2 LTR MaLR -147 223 171 3 857 416 341 57 8 chr3 35725373 35725497 -123874286 + RSINE1 SINE B4 32 161 -4 3 857 213 174 0 42 chr3 35726076 35726124 -123873659 + GA-rich Low_complexity Low_complexity 3 48 0 3 857 23 78 0 0 chr3 35726409 35726460 -123873323 + AT_rich Low_complexity Low_complexity 1 51 0 3 857 646 297 7 7 chr3 35726526 35726675 -123873108 + RSINE1 SINE B4 17 165 0 3 857 219 276 150 45 chr3 35726842 35726975 -123872808 + RSINE1 SINE B4 6 152 -13 3 857 23 0 0 0 chr3 35727858 35727881 -123871902 + AT_rich Low_complexity Low_complexity 1 23 0 3 857 26 50 0 0 chr3 35727965 35728005 -123871778 + AT_rich Low_complexity Low_complexity 1 40 0 3 857 677 148 42 0 chr3 35728027 35728169 -123871614 - Lx LINE L1 -5 6649 6502 3 857 387 355 36 45 chr3 35728697 35728918 -123870865 + B4A SINE B4 1 219 -73 3 857 180 0 0 0 chr3 35729108 35729128 -123870655 + (TTG)n Simple_repeat Simple_repeat 2 21 0 3 857 1165 49 7 0 chr3 35729128 35729271 -123870512 - B1_Mus2 SINE Alu -3 144 1 3 857 414 130 0 0 chr3 35729524 35729593 -123870190 - Lx3B LINE L1 0 6973 6905 3 857 324 0 0 0 chr3 35729593 35729629 -123870154 + (CA)n Simple_repeat Simple_repeat 2 37 0 3 857 22 0 0 0 chr3 35729669 35729691 -123870092 + AT_rich Low_complexity Low_complexity 1 22 0 3 857 27 96 0 0 chr3 35730487 35730570 -123869213 + AT_rich Low_complexity Low_complexity 1 83 0 3 857 372 274 46 107 chr3 35730639 35730770 -123869013 + RSINE1 SINE B4 15 137 -28 3 857 21 36 0 0 chr3 35730921 35730949 -123868834 + AT_rich Low_complexity Low_complexity 1 28 0 3 857 249 204 121 61 chr3 35732183 35732282 -123867501 - ID_B1 SINE B4 -13 211 107 3 857 728 232 93 6 chr3 35732314 35732496 -123867287 - MTC LTR MaLR -177 244 47 3 857 751 163 8 0 chr3 35732505 35732634 -123867149 + B2_Mm2 SINE B2 1 130 -65 3 857 1048 116 28 39 chr3 35734909 35735089 -123864694 + B2_Mm1t SINE B2 2 179 -14 3 857 23 0 0 0 chr3 35736463 35736486 -123863297 + AT_rich Low_complexity Low_complexity 1 23 0 3 857 432 248 98 30 chr3 35737345 35737478 -123862305 - RSINE1 SINE B4 -21 144 3 3 857 265 350 100 0 chr3 35737833 35737933 -123861850 - PB1D10 SINE Alu -7 110 1 3 857 29 28 0 0 chr3 35738193 35738229 -123861554 + AT_rich Low_complexity Low_complexity 1 36 0 3 857 590 251 103 32 chr3 35738872 35739057 -123860726 - B3A SINE B2 0 198 1 3 857 240 59 0 0 chr3 35740451 35740485 -123859298 + (TG)n Simple_repeat Simple_repeat 2 35 0 3 857 432 0 0 0 chr3 35740541 35740589 -123859194 + (TA)n Simple_repeat Simple_repeat 2 49 0 3 857 503 311 39 64 chr3 35740737 35740811 -123858972 - B4 SINE B4 0 292 95 3 857 752 156 93 8 chr3 35740811 35740940 -123858843 - B1_Mur1 SINE Alu 0 149 10 3 857 963 189 68 19 chr3 35741821 35742026 -123857757 + B3 SINE B2 2 216 0 3 857 440 182 114 0 chr3 35743168 35743256 -123856527 + B3 SINE B2 1 98 -118 3 857 207 0 0 0 chr3 35743275 35743298 -123856485 + (CATA)n Simple_repeat Simple_repeat 4 26 0 3 857 22 80 0 0 chr3 35743507 35743557 -123856226 + AT_rich Low_complexity Low_complexity 1 50 0 3 857 1079 156 34 29 chr3 35743728 35743933 -123855850 + ID_B1 SINE B4 3 208 -16 3 857 510 274 51 40 chr3 35744166 35744440 -123855343 - B4A SINE B4 -15 277 1 3 857 21 0 0 0 chr3 35744865 35744886 -123854897 + AT_rich Low_complexity Low_complexity 1 21 0 3 857 573 55 0 0 chr3 35746597 35746670 -123853113 + (TG)n Simple_repeat Simple_repeat 1 73 0 3 857 236 226 34 135 chr3 35747246 35747394 -123852389 + B2_Mm2 SINE B2 52 184 -11 3 857 450 262 48 0 chr3 35747388 35747491 -123852292 + B1_Mur1 SINE Alu 24 131 -18 3 857 222 37 0 0 chr3 35747491 35747518 -123852265 + (GGGA)n Simple_repeat Simple_repeat 1 27 0 3 857 854 159 19 52 chr3 35748838 35749050 -123850733 - RMER17C LTR ERVK -205 205 1 3 857 607 206 191 88 chr3 35750386 35750727 -123849056 - MTE2a LTR MaLR -1 378 3 3 857 219 268 56 14 chr3 35750737 35750809 -123848974 + PB1D10 SINE Alu 35 109 -8 3 857 226 276 0 0 chr3 35750824 35750882 -123848901 + ID4 SINE ID 1 58 -25 3 857 6656 82 5 40 chr3 35751139 35752443 -123847340 - Lx3B LINE L1 -833 6140 4901 3 857 339 25 0 0 chr3 35752841 35752881 -123846902 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 3 857 1004 109 0 0 chr3 35752883 35753021 -123846762 - B1_Mus1 SINE Alu -7 141 4 3 857 214 204 17 100 chr3 35753206 35753266 -123846517 + L2 LINE L2 2844 2898 -521 3 857 239 250 12 161 chr3 35753420 35753451 -123846332 - B4A SINE B4 0 292 273 3 857 567 0 0 0 chr3 35753451 35753514 -123846269 + (TG)n Simple_repeat Simple_repeat 2 64 0 3 857 239 250 12 161 chr3 35753514 35753563 -123846220 - B4A SINE B4 -20 272 224 3 857 546 16 0 0 chr3 35753905 35753968 -123845815 + (GTTTG)n Simple_repeat Simple_repeat 5 67 0 3 857 32 0 0 0 chr3 35755081 35755113 -123844670 + AT_rich Low_complexity Low_complexity 1 32 0 3 857 3399 150 67 50 chr3 35755857 35756557 -123843226 - RMER13B LTR ERVK -184 724 13 4 857 410 184 105 0 chr3 35756524 35756600 -123843183 - B1_Mus2 SINE Alu -60 87 4 4 857 367 298 108 103 chr3 35756632 35756845 -123842938 + B4 SINE B4 1 214 -78 4 857 976 48 0 0 chr3 35756844 35756969 -123842814 + B1_Mus1 SINE Alu 24 148 0 4 857 5383 145 68 14 chr3 35757022 35758145 -123841638 + Lx5 LINE L1 3968 5150 -730 4 857 5369 68 58 1 chr3 35758148 35759576 -123840207 + L1VL2 LINE L1 328 1826 -1789 4 857 319 243 40 0 chr3 35759714 35759788 -123839995 - PB1D10 SINE Alu -14 103 27 4 857 22 70 0 0 chr3 35760663 35760706 -123839077 + AT_rich Low_complexity Low_complexity 1 43 0 4 857 230 181 83 0 chr3 35760798 35760870 -123838913 + L1M2 LINE L1 2745 2822 -3321 4 857 609 167 12 55 chr3 35760884 35761049 -123838734 + RMER3D-int LTR ERVK 1084 1241 -1601 4 857 3386 202 70 10 chr3 35761068 35762492 -123837291 + Lx5 LINE L1 5138 6887 -573 4 857 847 190 123 48 chr3 35762502 35762729 -123837054 + Lx7 LINE L1 5059 5302 -578 4 857 6065 195 97 30 chr3 35763999 35765106 -123834677 + Lx7 LINE L1 5286 6537 -1159 4 857 3030 157 25 117 chr3 35765106 35765784 -123833999 - RLTR18 LTR ERVK 0 616 1 4 857 6065 197 87 55 chr3 35765784 35766657 -123833126 + Lx7 LINE L1 6538 7367 -329 4 857 23 33 0 0 chr3 35766671 35766701 -123833082 + AT_rich Low_complexity Low_complexity 1 30 0 4 857 1148 216 30 29 chr3 35766744 35767085 -123832698 + Lx7 LINE L1 7107 7675 -21 4 857 514 218 55 0 chr3 35767085 35767195 -123832588 - PB1D9 SINE Alu -3 117 2 4 857 853 278 58 35 chr3 35767195 35767209 -123832574 + Lx7 LINE L1 7443 7456 -4 4 857 284 279 0 81 chr3 35767244 35767330 -123832453 + ID4_ SINE ID 2 80 -3 4 857 207 69 0 0 chr3 35767336 35767365 -123832418 + (CAA)n Simple_repeat Simple_repeat 2 30 0 4 857 227 248 112 26 chr3 35767509 35767625 -123832158 + L1M2 LINE L1 3502 3627 -2513 4 857 326 343 65 5 chr3 35767656 35767855 -123831928 + L1M2 LINE L1 3709 3919 -2224 4 857 296 111 19 0 chr3 35767876 35767930 -123831853 + (CAAA)n Simple_repeat Simple_repeat 2 56 0 4 857 303 244 73 32 chr3 35767991 35768114 -123831669 + L1M2 LINE L1 4018 4145 -1998 4 857 951 180 21 47 chr3 35768182 35768374 -123831409 + B2_Mm2 SINE B2 1 187 -8 4 857 292 283 152 0 chr3 35768424 35768523 -123831260 + RSINE1 SINE B4 14 127 -38 4 857 250 306 18 109 chr3 35768644 35768754 -123831029 + PB1D10 SINE Alu 1 100 -17 4 857 334 266 45 9 chr3 35769223 35769333 -123830450 + L1MB8 LINE L1 4680 4793 -1353 4 857 925 207 44 11 chr3 35769475 35769656 -123830127 + B4A SINE B4 92 278 -14 4 857 424 199 113 27 chr3 35769660 35769810 -123829973 + L1MB8 LINE L1 5210 5372 -774 4 857 3273 30 100 23 chr3 35769811 35770252 -123829531 + IAPLTR2_Mm LTR ERVK 1 475 0 4 857 991 110 25 81 chr3 35770253 35770451 -123829332 + IAPEz-int LTR ERVK 9 195 -6286 4 857 226 321 0 0 chr3 35770451 35770504 -123829279 + RLTR27 LTR ERVK 223 275 -34 4 857 3686 59 0 20 chr3 35770504 35771009 -123828774 + IAPEz-int LTR ERVK 168 662 -5819 4 857 862 52 26 0 chr3 35771009 35771125 -123828658 + IAPEz-int LTR ERVK 1359 1477 -5004 4 857 1801 91 8 0 chr3 35771120 35771372 -123828411 + IAPEz-int LTR ERVK 2244 2497 -5183 4 857 13565 61 8 0 chr3 35771393 35773181 -123826602 + IAPEz-int LTR ERVK 4678 6479 -2 4 857 3134 35 42 20 chr3 35773183 35773585 -123826198 + IAPLTR2a LTR ERVK 1 411 0 4 857 1235 262 117 48 chr3 35773585 35773646 -123826137 + L1MB2 LINE L1 5368 5439 -732 4 857 889 204 9 75 chr3 35773646 35773858 -123825925 + B3A SINE B2 1 198 0 4 857 1235 262 117 48 chr3 35773858 35774401 -123825382 + L1MB2 LINE L1 5440 6014 -157 4 857 458 78 32 43 chr3 35775018 35775112 -123824671 + CT-rich Low_complexity Low_complexity 2 94 0 4 857 1123 82 7 0 chr3 35775112 35775258 -123824525 - B1_Mus1 SINE Alu -1 147 1 4 857 26050 110 12 13 chr3 35775832 35781746 -123818037 + L1_Mus4 LINE L1 723 6628 -8 4 857 211 146 0 35 chr3 35781889 35781946 -123817837 + (TA)n Simple_repeat Simple_repeat 1 55 0 4 857 1051 136 28 33 chr3 35782269 35782451 -123817332 + B2_Mm2 SINE B2 1 181 -14 4 857 718 200 230 45 chr3 35782467 35782645 -123817138 + B3 SINE B2 1 211 -5 4 858 647 281 72 20 chr3 35782702 35783007 -123816776 + L1MB8 LINE L1 5677 5997 -181 4 858 253 248 66 74 chr3 35783135 35783257 -123816526 + L1MD LINE L1 3742 3862 -2284 4 858 611 268 140 0 chr3 35783347 35783683 -123816100 + L1M5 LINE L1 4030 4412 -1734 4 858 292 257 133 0 chr3 35784104 35784209 -123815574 + L1M5 LINE L1 4966 5084 -1062 4 858 232 253 0 39 chr3 35784265 35784343 -123815440 + GA-rich Low_complexity Low_complexity 1 75 0 4 858 299 238 88 10 chr3 35785440 35785542 -123814241 - L1MB8 LINE L1 -231 5947 5838 4 858 325 321 15 0 chr3 35786119 35786253 -123813530 - L1M3 LINE L1 -551 5632 5497 4 858 230 216 39 0 chr3 35786254 35786305 -123813478 - tRNA-Ala-GCA tRNA tRNA -17 58 6 4 858 390 275 40 60 chr3 35786490 35786641 -123813142 + RSINE1 SINE B4 3 150 -15 4 858 808 155 47 40 chr3 35786965 35787113 -123812670 + B1_Mur4 SINE Alu 2 150 0 4 858 21 36 0 0 chr3 35787356 35787384 -123812399 + AT_rich Low_complexity Low_complexity 1 28 0 4 858 252 288 0 0 chr3 35787433 35787492 -123812291 - ID4 SINE ID 0 83 25 4 858 24 0 0 0 chr3 35788861 35788885 -123810898 + AT_rich Low_complexity Low_complexity 1 24 0 4 858 464 254 168 5 chr3 35789197 35789387 -123810396 + ID_B1 SINE B4 1 221 -3 4 858 717 232 92 0 chr3 35789434 35789598 -123810185 + B3 SINE B2 28 206 -10 4 858 338 270 72 0 chr3 35789619 35789727 -123810056 + PB1D10 SINE Alu 1 120 -7 4 858 428 250 33 0 chr3 35789796 35789888 -123809895 + B1_Mur3 SINE Alu 1 95 -54 4 858 895 252 43 14 chr3 35790147 35790356 -123809427 + ID_B1 SINE B4 2 216 -8 4 858 308 308 42 91 chr3 35790556 35790699 -123809084 + B3A SINE B2 59 194 -4 4 858 215 270 32 0 chr3 35794624 35794687 -123805096 + GA-rich Low_complexity Low_complexity 1 65 0 4 858 252 0 0 0 chr3 35795676 35795704 -123804079 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 4 858 1368 70 47 0 chr3 35795729 35795900 -123803883 + B2_Mm2 SINE B2 3 181 -14 4 858 642 60 0 0 chr3 35796206 35796289 -123803494 + (CA)n Simple_repeat Simple_repeat 1 83 0 4 858 228 345 54 9 chr3 35797081 35797192 -123802591 - MER20 DNA MER1_type -8 211 96 4 858 207 0 0 0 chr3 35797355 35797378 -123802405 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 4 858 1724 192 29 8 chr3 35797934 35798285 -123801498 + ORR1C1 LTR MaLR 21 378 0 4 858 1777 325 78 62 chr3 35798294 35798526 -123801257 + Lx9 LINE L1 5633 5865 -1608 4 858 2394 87 18 15 chr3 35798526 35798852 -123800931 - ORR1A2 LTR MaLR 0 327 1 4 858 2171 300 75 43 chr3 35798852 35800025 -123799758 + Lx9 LINE L1 5866 7190 -454 4 858 198 71 0 0 chr3 35800124 35800152 -123799631 + (TC)n Simple_repeat Simple_repeat 1 28 0 4 858 313 206 0 0 chr3 35800172 35800235 -123799548 - L1M1 LINE L1 -526 5777 5715 4 858 593 193 10 24 chr3 35800225 35800374 -123799409 - Lx7 LINE L1 -1716 5928 5781 4 858 26 0 0 0 chr3 35800408 35800434 -123799349 + AT_rich Low_complexity Low_complexity 1 26 0 4 858 263 235 0 24 chr3 35800737 35800820 -123798963 + (TATATG)n Simple_repeat Simple_repeat 6 86 0 4 858 340 261 271 19 chr3 35801308 35801577 -123798206 + L1M2 LINE L1 4338 4674 -1469 4 858 223 316 40 0 chr3 35801578 35801654 -123798129 + ID4 SINE ID 1 79 -4 4 858 460 233 103 8 chr3 35801725 35801842 -123797941 + RSINE1 SINE B4 25 152 -13 4 858 399 228 117 94 chr3 35801884 35802215 -123797568 + L1M2 LINE L1 5054 5398 -902 4 858 303 289 173 37 chr3 35802268 35802430 -123797353 + B3A SINE B2 15 198 0 4 858 299 179 260 50 chr3 35802430 35802530 -123797253 + L1M2 LINE L1 5493 5613 -678 4 858 228 111 0 0 chr3 35802590 35802626 -123797157 + (A)n Simple_repeat Simple_repeat 1 36 0 4 858 257 251 238 6 chr3 35802629 35802791 -123796992 + L1M2 LINE L1 5601 5795 -496 4 858 4106 129 83 50 chr3 35802883 35803631 -123796152 + RLTR25B LTR ERVK 1 773 -255 4 858 267 175 143 0 chr3 35803727 35803830 -123795953 + L1_Mur3 LINE L1 2310 2451 -3396 4 858 1512 302 166 60 chr3 35804046 35805274 -123794509 - L1_Mur3 LINE L1 -262 5618 4282 4 858 3164 36 114 8 chr3 35805274 35805668 -123794115 - L1Md_F2 LINE L1 0 6582 6147 4 858 1512 302 166 60 chr3 35805668 35806290 -123793493 - L1_Mur3 LINE L1 -1599 4281 3571 4 858 628 289 108 49 chr3 35806339 35806864 -123792919 + L1_Mur3 LINE L1 2489 3036 -2811 4 858 234 0 0 0 chr3 35807067 35807093 -123792690 + (TG)n Simple_repeat Simple_repeat 1 26 0 4 858 266 229 0 0 chr3 35807184 35807254 -123792529 + L1M2 LINE L1 3090 3159 -2984 4 858 437 299 72 7 chr3 35807254 35807301 -123792482 + RSINE1 SINE B4 3 52 -113 4 858 2518 69 119 11 chr3 35807301 35807653 -123792130 + RLTR10 LTR ERVK 1 390 0 4 858 437 299 72 7 chr3 35807653 35807743 -123792040 + RSINE1 SINE B4 53 148 -17 4 858 198 103 0 0 chr3 35807743 35807772 -123792011 + (CA)n Simple_repeat Simple_repeat 1 29 0 4 858 205 171 0 0 chr3 35807774 35807809 -123791974 + CT-rich Low_complexity Low_complexity 2 36 0 4 858 544 252 59 0 chr3 35808480 35808599 -123791184 + B1F2 SINE Alu 3 128 -21 4 858 311 297 99 0 chr3 35808673 35808774 -123791009 - PB1D10 SINE Alu -6 111 1 4 858 24803 121 37 9 chr3 35808816 35810483 -123789300 + L1VL4 LINE L1 378 2020 -3863 4 858 1177 95 0 0 chr3 35810483 35810630 -123789153 - B1_Mus1 SINE Alu 0 148 2 4 858 24803 139 45 15 chr3 35810630 35814142 -123785641 + L1VL4 LINE L1 2021 5654 -229 4 858 22 70 0 0 chr3 35815093 35815136 -123784647 + AT_rich Low_complexity Low_complexity 1 43 0 4 858 333 282 34 40 chr3 35815416 35815564 -123784219 - Tigger7 DNA MER2_type -35 2456 2310 4 858 923 305 112 49 chr3 35815621 35815969 -123783814 - Tigger7 DNA MER2_type -2121 370 1 4 858 252 280 206 12 chr3 35816608 35816778 -123783005 + LTR50 LTR ERVL 9 211 -584 4 858 475 197 112 24 chr3 35817309 35817434 -123782349 - ID_B1 SINE B4 -9 215 80 4 858 682 185 123 0 chr3 35818340 35818470 -123781313 + B1_Mur2 SINE Alu 4 149 0 4 858 231 36 0 0 chr3 35818500 35818528 -123781255 + (CA)n Simple_repeat Simple_repeat 2 29 0 4 858 1681 196 77 0 chr3 35818871 35819233 -123780550 + Lx3C LINE L1 6585 6974 -2 4 858 266 26 53 0 chr3 35820666 35820704 -123779079 + (TCTG)n Simple_repeat Simple_repeat 1 40 0 4 858 495 277 76 55 chr3 35820742 35820887 -123778896 - RSINE1 SINE B4 -16 149 2 4 858 312 223 191 44 chr3 35821713 35821849 -123777934 - CYRA11_Mm Unknown Y-chromosome -290 327 172 4 858 697 125 133 0 chr3 35821730 35821850 -123777933 + URR1B DNA MER1_type 90 225 0 4 858 833 145 65 0 chr3 35822959 35823097 -123776686 - B1_Mur3 SINE Alu -1 148 2 4 858 240 35 0 0 chr3 35823469 35823498 -123776285 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 4 858 598 195 176 26 chr3 35824064 35824217 -123775566 - B3 SINE B2 -5 211 36 4 858 465 177 10 59 chr3 35824448 35824550 -123775233 + B1_Mur1 SINE Alu 53 149 0 4 858 302 313 22 43 chr3 35826340 35826483 -123773300 - B1F SINE Alu -5 144 2 5 858 341 330 125 0 chr3 35826766 35826878 -123772905 + PB1 SINE Alu 2 127 0 5 858 556 269 90 0 chr3 35827155 35827289 -123772494 - ID_B1 SINE B4 -58 166 21 5 858 189 0 0 0 chr3 35827410 35827431 -123772352 + (T)n Simple_repeat Simple_repeat 1 21 0 5 858 660 207 13 40 chr3 35827735 35827886 -123771897 - B1F1 SINE Alu -1 148 2 5 858 492 48 0 0 chr3 35827919 35827982 -123771801 + (CTGGGG)n Simple_repeat Simple_repeat 4 66 0 5 858 214 198 23 58 chr3 35831597 35831683 -123768100 + (CCGGG)n Simple_repeat Simple_repeat 4 86 0 5 858 180 0 0 0 chr3 35831761 35831781 -123768002 + (CGG)n Simple_repeat Simple_repeat 1 20 0 5 858 36 62 0 0 chr3 35831819 35831883 -123767900 + GC_rich Low_complexity Low_complexity 1 64 0 5 858 24 0 0 0 chr3 35831953 35831977 -123767806 + GC_rich Low_complexity Low_complexity 1 24 0 5 858 183 205 0 0 chr3 35832551 35832590 -123767193 + (TG)n Simple_repeat Simple_repeat 1 39 0 5 858 353 293 81 8 chr3 35833674 35833798 -123765985 - MIR SINE MIR -118 144 12 5 858 592 321 65 50 chr3 35833993 35834255 -123765528 - B4 SINE B4 -16 276 11 5 858 342 0 0 0 chr3 35834290 35834328 -123765455 + (TC)n Simple_repeat Simple_repeat 1 38 0 5 858 261 0 0 0 chr3 35834328 35834356 -123765427 + (CA)n Simple_repeat Simple_repeat 1 29 0 5 858 471 238 127 0 chr3 35834485 35834611 -123765172 + B1_Mur1 SINE Alu 2 143 -6 5 858 407 210 83 16 chr3 35835109 35835230 -123764553 - B4A SINE B4 -163 129 1 5 858 1602 63 89 5 chr3 35836702 35836926 -123762857 + L1_Mus2 LINE L1 6324 6566 0 5 858 280 243 135 0 chr3 35837006 35837023 -123762760 + B4A SINE B4 67 98 -194 5 858 426 183 98 11 chr3 35837023 35837127 -123762656 + PB1D10 SINE Alu 1 111 -6 5 858 579 251 128 0 chr3 35837538 35837717 -123762066 - B3 SINE B2 -14 202 1 5 858 532 253 103 21 chr3 35837876 35838070 -123761713 + ID_B1 SINE B4 6 215 -9 5 858 361 212 12 59 chr3 35838161 35838246 -123761537 - ID4_ SINE ID 0 83 3 5 858 195 100 0 0 chr3 35838249 35838279 -123761504 + (T)n Simple_repeat Simple_repeat 1 30 0 5 858 394 244 23 47 chr3 35838504 35838517 -123761266 + ID_B1 SINE B4 79 203 -20 5 858 623 183 26 0 chr3 35838517 35838632 -123761151 + B1_Mur3 SINE Alu 9 126 -23 5 858 274 271 14 0 chr3 35840740 35840810 -123758973 + PB1D10 SINE Alu 43 113 -4 5 858 228 194 161 0 chr3 35840979 35841041 -123758742 + L1MC LINE L1 3880 3951 -2195 5 858 2060 181 143 15 chr3 35841045 35841515 -123758268 - MT2A LTR ERVL -2 531 2 5 858 1296 152 59 12 chr3 35841516 35841769 -123758014 - MERVL_2A-int LTR ERVL 0 5761 5497 5 858 9111 180 43 6 chr3 35841809 35843453 -123756330 - MERVL_2A-int LTR ERVL -421 5340 3636 5 858 5325 147 75 16 chr3 35843845 35845060 -123754723 - MYSERV16_I-int LTR ERVK -208 2118 724 5 858 664 129 262 14 chr3 35845060 35845201 -123754582 + B2_Mm2 SINE B2 1 176 -19 5 858 1152 77 0 0 chr3 35845204 35845347 -123754436 + B1_Mus1 SINE Alu 1 143 -5 5 858 3512 198 76 45 chr3 35845347 35846180 -123753603 - MYSERV16_I-int LTR ERVK -1449 1393 1 5 858 26 30 0 0 chr3 35846242 35846275 -123753508 + AT_rich Low_complexity Low_complexity 1 33 0 5 858 351 0 0 0 chr3 35846353 35846392 -123753391 + (TC)n Simple_repeat Simple_repeat 2 40 0 5 858 239 0 0 31 chr3 35846394 35846426 -123753357 + (TTTTTG)n Simple_repeat Simple_repeat 6 36 0 5 858 1157 88 0 0 chr3 35846426 35846574 -123753209 - B1_Mus1 SINE Alu 0 148 1 5 858 735 200 6 55 chr3 35847137 35847301 -123752482 - RLTR20C LTR ERVK 0 578 423 5 858 1049 168 108 51 chr3 35847299 35847594 -123752189 - RLTR20C LTR ERVK -222 312 1 5 858 459 0 0 0 chr3 35847616 35847667 -123752116 + (TAGA)n Simple_repeat Simple_repeat 4 54 0 5 858 1403 172 76 0 chr3 35847711 35847949 -123751834 - MERVL_2A-int LTR ERVL -2190 3571 3316 5 858 688 168 1 17 chr3 35847960 35848097 -123751686 + MT2A LTR ERVL 347 540 -61 5 858 299 168 0 38 chr3 35848104 35848209 -123751574 + (TCTG)n Simple_repeat Simple_repeat 4 104 0 5 858 373 337 62 6 chr3 35848209 35848256 -123751527 - MTE2b LTR MaLR -188 191 6 5 858 643 172 16 8 chr3 35848256 35848385 -123751398 - MT2A LTR ERVL -398 135 6 5 858 274 273 35 112 chr3 35848389 35848558 -123751225 + L1M4 LINE L1 3957 4112 -2034 5 858 1452 273 124 21 chr3 35848640 35849601 -123750182 + L1M4 LINE L1 4399 5469 -705 5 858 2465 269 72 25 chr3 35849781 35850526 -123749257 - Lx8 LINE L1 -6 7467 6688 5 858 334 140 0 0 chr3 35850526 35850583 -123749200 + MTC LTR MaLR 1 57 -364 5 858 342 0 0 0 chr3 35850593 35850631 -123749152 + (TTTA)n Simple_repeat Simple_repeat 3 40 0 5 858 289 219 0 103 chr3 35850631 35850748 -123749035 - Lx4B LINE L1 -14 7044 6940 5 858 1529 181 0 0 chr3 35850747 35850990 -123748793 + Lx5 LINE L1 6654 6896 -154 5 858 415 220 58 0 chr3 35850990 35851101 -123748682 + MTC LTR MaLR 49 168 -251 5 858 1475 246 71 57 chr3 35851124 35851546 -123748237 - Lx8 LINE L1 -781 6692 6265 5 858 348 181 0 0 chr3 35851658 35851730 -123748053 + MTE2a LTR MaLR 308 379 0 5 858 309 262 0 59 chr3 35851731 35851816 -123747967 - ID4_ SINE ID -3 80 1 5 858 1490 209 16 48 chr3 35852256 35852632 -123747151 + ORR1D1 LTR MaLR 2 365 -9 5 858 230 323 0 0 chr3 35853383 35853445 -123746338 - ID4_ SINE ID -19 64 3 5 858 419 253 21 0 chr3 35853477 35853572 -123746211 + PB1D7 SINE Alu 15 111 -9 5 858 271 330 22 0 chr3 35853579 35853663 -123746120 + B1F SINE Alu 4 89 -60 5 858 3079 131 30 81 chr3 35853663 35854242 -123745541 + RMER15 LTR ERVL 1 551 -24 5 858 2622 96 12 42 chr3 35854242 35854666 -123745117 - RLTR9F LTR ERVK -4 411 1 5 858 3079 131 30 81 chr3 35854666 35854692 -123745091 + RMER15 LTR ERVL 552 575 0 5 858 260 224 0 0 chr3 35854692 35854741 -123745042 + B1F1 SINE Alu 84 132 -17 5 858 401 0 20 0 chr3 35854746 35854795 -123744988 + (GA)n Simple_repeat Simple_repeat 2 51 0 5 858 278 286 83 0 chr3 35855706 35855790 -123743993 - PB1D10 SINE Alu -21 96 6 5 858 1975 148 46 54 chr3 35856021 35856392 -123743391 - ORR1C1 LTR MaLR 0 378 11 5 858 404 321 55 6 chr3 35856818 35856981 -123742802 - B4A SINE B4 -14 278 108 5 858 673 154 187 0 chr3 35857073 35857196 -123742587 - B1_Mus1 SINE Alu 0 148 3 5 858 1863 233 75 24 chr3 35857238 35857332 -123742451 - RLTR20B1 LTR ERVK 0 563 456 5 858 495 122 0 0 chr3 35857332 35857422 -123742361 + (CA)n Simple_repeat Simple_repeat 2 91 0 5 858 1863 233 75 24 chr3 35857422 35857863 -123741920 - RLTR20B1 LTR ERVK -108 455 1 5 858 201 167 0 77 chr3 35859212 35859277 -123740506 + T-rich Low_complexity Low_complexity 4 63 0 5 858 438 20 0 0 chr3 35860698 35860749 -123739034 + (TCTA)n Simple_repeat Simple_repeat 2 52 0 5 858 241 316 0 13 chr3 35860749 35860826 -123738957 - ID4_ SINE ID -5 78 3 5 858 498 284 180 35 chr3 35860898 35861215 -123738568 + MLT1A0 LTR MaLR 1 363 -2 5 858 298 323 21 0 chr3 35861270 35861363 -123738420 + B1F SINE Alu 3 97 -52 5 858 246 275 0 14 chr3 35861592 35861662 -123738121 + PB1 SINE Alu 36 104 -23 5 858 211 299 23 125 chr3 35861718 35861806 -123737977 - ID4_ SINE ID 0 83 5 5 858 1265 179 14 0 chr3 35861966 35862178 -123737605 + B3 SINE B2 2 216 0 5 858 300 328 73 39 chr3 35862929 35863107 -123736676 - MIRb SINE MIR -59 209 26 5 858 440 231 0 0 chr3 35863138 35863229 -123736554 + PB1D7 SINE Alu 30 120 0 5 858 21 57 0 0 chr3 35863546 35863581 -123736202 + AT_rich Low_complexity Low_complexity 1 35 0 5 858 396 292 76 6 chr3 35863645 35863817 -123735966 + B3A SINE B2 8 191 -7 5 858 207 69 0 0 chr3 35863825 35863854 -123735929 + (CAGA)n Simple_repeat Simple_repeat 4 32 0 5 858 486 263 42 66 chr3 35864754 35864921 -123734862 + RSINE1 SINE B4 3 165 0 5 858 251 379 56 31 chr3 35865022 35865218 -123734565 + Charlie1 DNA MER1_type 29 229 -2552 5 858 1054 263 69 64 chr3 35865226 35865330 -123734453 + L1MB3 LINE L1 5279 5379 -804 5 858 306 0 0 0 chr3 35865330 35865364 -123734419 + (CA)n Simple_repeat Simple_repeat 2 35 0 5 858 1054 267 59 55 chr3 35865364 35865956 -123733827 + L1MB3 LINE L1 5380 6008 -175 5 858 1052 148 145 20 chr3 35865956 35866156 -123733627 - URR1B DNA MER1_type 0 225 1 5 858 604 279 25 25 chr3 35866156 35866201 -123733582 + L1MB3 LINE L1 6009 6053 -130 5 858 1398 276 90 43 chr3 35866218 35866874 -123732909 + Lx8 LINE L1 6780 7466 -7 5 858 267 204 74 0 chr3 35866910 35866964 -123732819 + L1MB3 LINE L1 6070 6127 -56 5 858 250 323 70 8 chr3 35867655 35867783 -123732000 + MIRc SINE MIR 13 148 -120 5 858 2512 74 51 0 chr3 35868674 35869024 -123730759 + Lx3_Mus LINE L1 6642 7009 0 5 858 708 236 103 20 chr3 35871985 35872180 -123727603 + B3 SINE B2 1 211 -5 5 858 234 0 0 0 chr3 35872282 35872308 -123727475 + (GA)n Simple_repeat Simple_repeat 2 27 0 5 858 216 297 54 21 chr3 35873741 35873834 -123725949 - L2b LINE L2 -18 3357 3262 5 858 251 136 0 43 chr3 35874164 35874233 -123725550 + A-rich Low_complexity Low_complexity 1 66 0 5 858 233 0 62 0 chr3 35874271 35874303 -123725480 + (TTTTTG)n Simple_repeat Simple_repeat 2 35 0 5 858 1136 55 7 20 chr3 35874305 35874454 -123725329 - B1_Mus2 SINE Alu 0 147 1 5 858 214 366 0 35 chr3 35874931 35875047 -123724736 - MIRb SINE MIR -93 175 64 5 858 904 50 0 0 chr3 35875344 35875464 -123724319 - B1_Mm SINE Alu 0 147 28 5 858 219 352 22 11 chr3 35875447 35875536 -123724247 + PB1 SINE Alu 38 127 0 5 858 447 92 0 0 chr3 35876444 35876509 -123723274 + (CA)n Simple_repeat Simple_repeat 2 66 0 5 858 1179 68 0 0 chr3 35877458 35877605 -123722178 - B1_Mus1 SINE Alu 0 148 2 5 858 229 275 12 24 chr3 35877730 35877812 -123721971 - ID4_ SINE ID -1 82 2 5 858 463 203 329 19 chr3 35878033 35878194 -123721589 + B3 SINE B2 4 214 -2 5 858 499 15 0 15 chr3 35879136 35879202 -123720581 - MTA_Mm LTR MaLR -331 65 1 5 858 341 148 32 16 chr3 35879202 35879264 -123720519 - Lx5 LINE L1 -148 6902 6840 5 858 1967 145 0 13 chr3 35879259 35879574 -123720209 + L1_Mur2 LINE L1 4973 5283 -594 6 858 250 240 141 13 chr3 35879816 35879972 -123719811 + L1MC1 LINE L1 3161 3336 -2810 6 858 266 262 0 0 chr3 35879995 35880056 -123719727 - tRNA-Ala-GCA tRNA tRNA -9 66 6 6 858 280 266 0 71 chr3 35880066 35880151 -123719632 + L1MC1 LINE L1 3341 3419 -2727 6 858 234 0 0 0 chr3 35880167 35880193 -123719590 + (CA)n Simple_repeat Simple_repeat 2 27 0 6 858 859 206 29 10 chr3 35880196 35880402 -123719381 + B3 SINE B2 1 210 -6 6 858 502 281 144 70 chr3 35880450 35881096 -123718687 + L1MC1 LINE L1 4694 5387 -759 6 858 548 160 0 29 chr3 35880646 35880749 -123719034 - L1MC LINE L1 -1450 4696 4597 6 858 262 278 14 0 chr3 35881140 35881212 -123718571 + ID4 SINE ID 2 74 -9 6 858 297 0 0 0 chr3 35881216 35881249 -123718534 + (TGAA)n Simple_repeat Simple_repeat 4 36 0 6 858 1111 202 208 3 chr3 35881298 35881610 -123718173 - MTD LTR MaLR -39 380 5 6 858 1952 261 106 22 chr3 35881610 35882377 -123717406 + L1MC1 LINE L1 5486 6316 -17 6 858 227 306 20 10 chr3 35882902 35883001 -123716782 - Helitron2Na_Mam RC Helitron? 0 324 225 6 858 314 269 203 60 chr3 35883004 35883186 -123716597 + B3 SINE B2 4 211 -5 6 858 2193 188 114 6 chr3 35884677 35885158 -123714625 + Lx9 LINE L1 6840 7372 -272 6 858 26 30 0 0 chr3 35885199 35885232 -123714551 + AT_rich Low_complexity Low_complexity 1 33 0 6 858 257 208 103 45 chr3 35885816 35885972 -123713811 - L1MCa LINE L1 -5393 1115 951 6 858 543 274 215 13 chr3 35886284 35886517 -123713266 - MLT1A0 LTR MaLR -5 360 81 6 858 313 252 65 83 chr3 35887078 35887186 -123712597 + B1F SINE Alu 32 137 -12 6 858 789 176 18 29 chr3 35887477 35887647 -123712136 - B3 SINE B2 -48 168 1 6 858 207 0 0 0 chr3 35888703 35888726 -123711057 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 6 858 221 304 92 92 chr3 35889417 35889504 -123710279 + RSINE1 SINE B4 2 88 -77 6 858 245 258 0 16 chr3 35889940 35890003 -123709780 - ID4 SINE ID -19 64 3 6 858 500 279 100 7 chr3 35890153 35890477 -123709306 - L1MB4 LINE L1 -200 5983 5628 6 858 489 275 20 40 chr3 35890497 35890645 -123709138 + RSINE1 SINE B4 21 165 0 6 858 252 247 0 0 chr3 35890646 35890731 -123709052 + (CA)n Simple_repeat Simple_repeat 2 86 0 6 858 6724 75 8 2 chr3 35890830 35891777 -123708006 + L1_Mus3 LINE L1 5707 6638 0 6 858 1257 77 6 6 chr3 35891816 35891986 -123707797 - B2_Mm2 SINE B2 -23 172 3 6 858 1181 48 14 0 chr3 35892034 35892180 -123707603 + B1_Mus1 SINE Alu 1 148 0 6 858 183 80 0 0 chr3 35892180 35892205 -123707578 + (A)n Simple_repeat Simple_repeat 1 25 0 6 858 34 24 0 0 chr3 35892208 35892249 -123707534 + AT_rich Low_complexity Low_complexity 1 41 0 6 858 514 237 155 21 chr3 35892320 35892462 -123707321 - RSINE1 SINE B4 -2 163 3 6 858 251 303 113 53 chr3 35893346 35893679 -123706104 - L2a LINE L2 0 3426 3020 6 858 2293 137 15 28 chr3 35893680 35894079 -123705704 - RLTR26 LTR ERVK -148 494 101 6 858 974 148 0 0 chr3 35894221 35894370 -123705413 + B1_Mur4 SINE Alu 1 149 -1 6 858 631 148 423 0 chr3 35894474 35894623 -123705160 + B3 SINE B2 5 216 0 6 858 733 161 0 0 chr3 35896107 35896219 -123703564 + PB1D9 SINE Alu 3 114 -6 6 858 1220 85 34 11 chr3 35897036 35897214 -123702569 + B2_Mm2 SINE B2 2 183 -12 6 858 1096 88 7 0 chr3 35897214 35897360 -123702423 + B1_Mus1 SINE Alu 1 148 0 6 858 324 70 0 0 chr3 35897360 35897403 -123702380 + (A)n Simple_repeat Simple_repeat 1 43 0 6 858 242 206 27 81 chr3 35897505 35897579 -123702204 - MER106B DNA MER1_type -904 155 86 6 858 276 254 132 43 chr3 35898761 35898909 -123700874 - MIRb SINE MIR -81 187 20 6 858 240 35 0 0 chr3 35899720 35899749 -123700034 + (T)n Simple_repeat Simple_repeat 1 29 0 6 858 439 256 104 0 chr3 35899984 35900109 -123699674 + B1F SINE Alu 5 142 -7 6 858 376 219 0 0 chr3 35900253 35900326 -123699457 + ID_B1 SINE B4 124 196 -28 6 858 277 302 41 10 chr3 35900326 35900350 -123699433 + B1F SINE Alu 43 142 -7 6 858 216 0 0 0 chr3 35900731 35900755 -123699028 + (A)n Simple_repeat Simple_repeat 1 24 0 6 858 879 161 0 20 chr3 35900905 35901057 -123698726 - B1_Mur2 SINE Alu 0 149 1 6 858 570 232 0 0 chr3 35901061 35901199 -123698584 + (TA)n Simple_repeat Simple_repeat 1 138 0 6 858 238 191 0 0 chr3 35901199 35901241 -123698542 - B1_Mm SINE Alu -27 120 79 6 858 455 323 149 47 chr3 35901269 35901779 -123698004 + L1M5 LINE L1 3338 3899 -2247 6 858 1982 93 76 13 chr3 35901884 35902188 -123697595 + ORR1A2 LTR MaLR 3 325 -2 6 858 313 203 0 0 chr3 35902725 35902784 -123696999 + ID_B1 SINE B4 164 222 -2 6 858 264 191 0 0 chr3 35903821 35903884 -123695899 - Lx6 LINE L1 -1 7459 7397 6 858 1734 150 42 3 chr3 35903884 35904191 -123695592 + RLTR22_Mur LTR ERVK 1 319 -1529 6 858 359 135 130 39 chr3 35904400 35904477 -123695306 - ORR1D2 LTR MaLR -281 89 6 6 858 1029 251 31 33 chr3 35904478 35904666 -123695117 - L1M2 LINE L1 -3333 3249 3068 6 858 2341 110 0 0 chr3 35904666 35904992 -123694791 - ORR1A3 LTR MaLR 0 326 1 6 858 1029 252 75 38 chr3 35904992 35905460 -123694323 - L1M2 LINE L1 -3515 3067 2459 6 858 856 264 51 31 chr3 35905462 35905817 -123693966 - L1_Mur3 LINE L1 -2282 3598 3237 6 858 23 54 0 0 chr3 35906056 35906093 -123693690 + AT_rich Low_complexity Low_complexity 1 37 0 6 858 3186 104 10 42 chr3 35906108 35906611 -123693172 - RLTR1C LTR ERV1 -16 487 1 6 858 423 0 0 0 chr3 35906723 35906770 -123693013 + (CA)n Simple_repeat Simple_repeat 2 48 0 6 858 539 130 181 9 chr3 35906988 35907104 -123692679 + Lx8 LINE L1 6584 6719 -754 6 858 1862 175 11 62 chr3 35907104 35907475 -123692308 - MTC LTR MaLR 0 421 70 6 858 551 314 33 28 chr3 35907477 35907657 -123692126 - RMER12 LTR ERVK 0 1322 1142 6 858 4721 201 88 36 chr3 35907749 35908157 -123691626 - RMER12 LTR ERVK -85 1237 769 6 858 627 51 0 0 chr3 35908157 35908236 -123691547 + (TGGA)n Simple_repeat Simple_repeat 1 79 0 6 858 4721 201 88 36 chr3 35908236 35908686 -123691097 - RMER12 LTR ERVK -554 768 319 6 858 2382 118 61 3 chr3 35908686 35909061 -123690722 + Lx LINE L1 6248 6644 -10 6 858 4721 201 88 36 chr3 35909061 35909376 -123690407 - RMER12 LTR ERVK -1004 318 2 6 858 376 205 84 59 chr3 35909376 35909444 -123690339 - MTC LTR MaLR -350 71 1 6 858 1209 275 124 28 chr3 35909446 35909954 -123689829 + Lx8 LINE L1 6713 7269 -204 6 858 209 167 37 0 chr3 35910041 35910095 -123689688 + (TA)n Simple_repeat Simple_repeat 1 56 0 6 858 375 136 81 41 chr3 35910866 35910989 -123688794 - Lx9 LINE L1 0 7644 7517 6 858 771 32 0 0 chr3 35910989 35911083 -123688700 + (CA)n Simple_repeat Simple_repeat 2 95 0 6 858 499 216 61 0 chr3 35911084 35911232 -123688551 - Lx9 LINE L1 -165 7479 7323 6 858 27 96 0 0 chr3 35911642 35911725 -123688058 + AT_rich Low_complexity Low_complexity 1 83 0 6 858 4517 162 26 26 chr3 35911735 35912590 -123687193 + RLTR13A LTR ERVK 1 855 0 6 858 465 316 23 0 chr3 35912706 35912839 -123686944 + B1F1 SINE Alu 9 144 -5 6 858 24 32 0 0 chr3 35912864 35912895 -123686888 + AT_rich Low_complexity Low_complexity 1 31 0 6 858 230 73 0 24 chr3 35913062 35913104 -123686679 + (TTTTG)n Simple_repeat Simple_repeat 1 41 0 6 858 377 322 111 6 chr3 35913123 35913304 -123686479 - Lx9 LINE L1 -704 6940 6741 6 858 1137 229 30 4 chr3 35913305 35913537 -123686246 + ORR1D2 LTR MaLR 1 238 -132 6 858 367 218 172 8 chr3 35913545 35913679 -123686104 + L1_Mur2 LINE L1 3522 3677 -2200 6 107 2601 305 22 79 chr3 35913674 35914174 -123685609 + Lx8 LINE L1 5313 5786 -1687 6 859 2106 121 102 0 chr3 35914174 35914506 -123685277 - Lx2 LINE L1 -1 6996 6631 6 859 2601 308 78 57 chr3 35914506 35915996 -123683787 + Lx8 LINE L1 5787 7343 -130 6 859 273 297 16 0 chr3 35916124 35916252 -123683531 + L1M3 LINE L1 4528 4657 -1483 6 859 523 261 92 12 chr3 35917367 35917530 -123682253 - B3A SINE B2 -22 176 1 6 859 1064 255 30 13 chr3 35918409 35918711 -123681072 - Lx8 LINE L1 -156 7317 7011 6 859 287 297 227 0 chr3 35919696 35919824 -123679959 + MLT1G LTR MaLR 254 410 -181 6 859 418 270 205 20 chr3 35920525 35920676 -123679107 - MTE-int LTR MaLR -32 1548 1370 6 859 385 162 176 0 chr3 35920806 35920880 -123678903 - B1_Mur2 SINE Alu -9 140 54 6 859 384 239 292 21 chr3 35920881 35921073 -123678710 - MTE-int LTR MaLR -1332 248 5 6 859 232 320 13 0 chr3 35921984 35922062 -123677721 + ID4_ SINE ID 3 81 -2 6 859 262 245 0 0 chr3 35922445 35922494 -123677289 + RLTR21 LTR ERVK 1 49 -1523 6 859 2144 176 81 66 chr3 35922498 35923027 -123676756 + RLTR31_Mur LTR ERVK 1 537 -16 6 859 3943 186 72 75 chr3 35923074 35924083 -123675700 + RLTR21 LTR ERVK 52 1057 -515 6 859 27 49 0 0 chr3 35924438 35924479 -123675304 + AT_rich Low_complexity Low_complexity 1 41 0 6 859 343 168 0 61 chr3 35924577 35924691 -123675092 + CT-rich Low_complexity Low_complexity 1 107 0 6 859 344 247 74 0 chr3 35925119 35925200 -123674583 - B1_Mus2 SINE Alu -1 146 60 6 859 439 250 81 113 chr3 35925229 35925414 -123674369 - MTEb LTR MaLR -2 377 199 6 859 594 284 96 24 chr3 35925416 35925708 -123674075 - Lx8 LINE L1 -309 7164 6852 6 859 744 241 0 0 chr3 35925708 35925853 -123673930 - ORR1E-int LTR MaLR -1435 145 1 6 859 432 306 143 77 chr3 35925854 35926190 -123673593 - ORR1E LTR MaLR -1 358 1 6 859 273 365 63 19 chr3 35926359 35926518 -123673265 + MIR SINE MIR 48 213 -49 6 859 7632 71 4 3 chr3 35927361 35929092 -123670691 - L1_Mus1 LINE L1 -2 6565 4834 6 859 401 264 88 0 chr3 35929220 35929368 -123670415 - L1M1 LINE L1 -478 5822 5662 6 859 396 380 0 7 chr3 35929445 35929583 -123670200 + B1F1 SINE Alu 1 137 -12 6 859 408 40 0 0 chr3 35929584 35929634 -123670149 + (CAAG)n Simple_repeat Simple_repeat 1 50 0 6 859 354 333 78 41 chr3 35929657 35929736 -123670047 + L1MB8 LINE L1 5652 5726 -452 6 859 953 215 236 10 chr3 35929736 35929839 -123669944 + ORR1D1 LTR MaLR 1 139 -235 7 859 233 70 0 44 chr3 35929839 35929884 -123669899 + (TCTCTG)n Simple_repeat Simple_repeat 4 46 0 7 859 953 215 236 10 chr3 35929884 35930085 -123669698 + ORR1D1 LTR MaLR 140 374 0 7 859 354 338 86 41 chr3 35930085 35930331 -123669452 + L1MB8 LINE L1 5727 6001 -173 6 859 274 293 8 57 chr3 35930369 35930492 -123669291 + L1MB8 LINE L1 6029 6145 -33 6 859 1414 71 16 0 chr3 35931453 35931635 -123668148 + B2_Mm2 SINE B2 2 186 -9 7 859 207 0 0 0 chr3 35931649 35931672 -123668111 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 7 859 519 284 121 23 chr3 35932086 35932259 -123667524 + ID_B1 SINE B4 1 190 -34 7 859 24 91 0 0 chr3 35933412 35933478 -123666305 + AT_rich Low_complexity Low_complexity 1 66 0 7 859 4153 82 31 5 chr3 35933520 35934095 -123665688 - L1_Mus3 LINE L1 -7 6631 6042 7 859 759 271 35 21 chr3 35934890 35935180 -123664603 + RLTR42-int LTR ERVK 1101 1394 -4128 7 859 7854 66 3 10 chr3 35935223 35936078 -123663705 - L1_Mur1 LINE L1 -425 5461 4614 7 859 3254 33 5 27 chr3 35936078 35936483 -123663300 + MTA_Mm LTR MaLR 1 396 0 7 859 7854 66 3 10 chr3 35936483 35936743 -123663040 - L1_Mur1 LINE L1 -1273 4613 4354 7 859 1491 101 32 0 chr3 35936742 35936960 -123662823 + L1_Mur1 LINE L1 5451 5675 -211 7 859 2939 155 26 33 chr3 35936957 35937850 -123661933 + L1_Rod LINE L1 1013 1914 -3933 7 859 1716 176 36 95 chr3 35937853 35938243 -123661540 + ORR1B1 LTR MaLR 28 394 0 7 859 3625 156 29 10 chr3 35938243 35938871 -123660912 + ORR1B1-int LTR MaLR 1 640 -1323 7 859 265 56 0 0 chr3 35938871 35938907 -123660876 + MERVL_2A-int LTR ERVL 5719 5754 -7 7 859 1267 190 70 49 chr3 35938931 35939258 -123660525 + ORR1B1-int LTR MaLR 1173 1506 -3 7 859 283 125 0 0 chr3 35939279 35939319 -123660464 + ORR1B1 LTR MaLR 347 386 -8 7 859 2369 198 21 9 chr3 35939322 35939887 -123659896 + L1_Rod LINE L1 1922 2493 -3354 7 859 1133 61 18 6 chr3 35940127 35940293 -123659490 - L1_Mus3 LINE L1 -2 6636 6469 7 859 525 288 89 0 chr3 35940628 35940774 -123659009 + RSINE1 SINE B4 4 162 -3 7 859 6231 199 59 40 chr3 35940802 35941970 -123657813 + L1_Rod LINE L1 2480 3665 -2182 7 859 732 42 0 0 chr3 35941970 35942066 -123657717 + (GA)n Simple_repeat Simple_repeat 1 96 0 7 859 6231 199 59 40 chr3 35942066 35942723 -123657060 + L1_Rod LINE L1 3666 4339 -1508 7 859 337 333 28 51 chr3 35942913 35943090 -123656693 - MTE2b-int LTR MaLR -1407 173 1 7 859 937 297 117 24 chr3 35943090 35943388 -123656395 - MTE2b LTR MaLR 0 379 50 7 859 1518 245 42 11 chr3 35943388 35943747 -123656036 + MTE2a LTR MaLR 1 370 -9 7 859 879 150 11 6 chr3 35943747 35943921 -123655862 + GA-rich Low_complexity Low_complexity 1 175 0 7 859 1609 281 101 58 chr3 35943948 35944423 -123655360 + MTE2a-int LTR MaLR 14 490 -1090 7 859 306 0 0 0 chr3 35944423 35944457 -123655326 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 7 859 1609 281 101 58 chr3 35944457 35944772 -123655011 + MTE2a-int LTR MaLR 491 838 -742 7 859 398 281 33 8 chr3 35944843 35944965 -123654818 + MTE-int LTR MaLR 150 274 -1306 7 859 601 257 174 16 chr3 35944970 35945288 -123654495 + RMER5 LTR ERV1 165 532 -2 7 859 215 296 0 36 chr3 35945341 35945425 -123654358 + CT-rich Low_complexity Low_complexity 1 81 0 7 859 485 304 31 40 chr3 35945981 35946207 -123653576 + L1MA5 LINE L1 6077 6300 0 7 859 320 64 0 21 chr3 35946294 35946342 -123653441 + (TA)n Simple_repeat Simple_repeat 1 47 0 7 859 272 255 138 44 chr3 35946607 35946767 -123653016 + L1M4 LINE L1 4633 4807 -1339 7 859 5132 98 16 13 chr3 35946790 35947091 -123652692 + Lx3A LINE L1 6224 6523 -458 7 859 4870 43 5 20 chr3 35947091 35947686 -123652097 + LTRIS_Mus LTR ERV1 2 587 0 7 859 5132 98 16 13 chr3 35947686 35948140 -123651643 + Lx3A LINE L1 6524 6981 0 7 859 323 284 0 0 chr3 35948422 35948496 -123651287 + ID4 SINE ID 9 82 -1 7 859 234 276 0 54 chr3 35948508 35948600 -123651183 + L1MC LINE L1 5175 5261 -885 7 859 249 253 27 0 chr3 35948941 35949016 -123650767 + L1MA10 LINE L1 6249 6325 -9 7 859 601 181 99 29 chr3 35949986 35950157 -123649626 - B2_Mm2 SINE B2 -11 184 2 7 859 1000 102 0 0 chr3 35950254 35950401 -123649382 - B1_Mus1 SINE Alu -1 147 1 7 859 191 261 43 64 chr3 35950949 35951043 -123648740 - MIR SINE MIR -14 248 157 7 859 468 292 23 0 chr3 35951095 35951225 -123648558 + RSINE1 SINE B4 3 135 -30 7 859 214 303 15 0 chr3 35951534 35951600 -123648183 - B3A SINE B2 -129 69 3 7 859 387 240 6 60 chr3 35951607 35951752 -123648031 - B3 SINE B2 -1 197 57 7 859 327 258 108 5 chr3 35951809 35951995 -123647788 - B4A SINE B4 -57 235 1 7 859 24 32 0 0 chr3 35952003 35952034 -123647749 + AT_rich Low_complexity Low_complexity 1 31 0 7 859 1189 54 0 13 chr3 35952799 35952948 -123646835 + B1_Mus1 SINE Alu 2 148 0 7 859 237 269 114 40 chr3 35952980 35953208 -123646575 + L1M2 LINE L1 2848 3092 -3051 7 859 416 286 0 45 chr3 35953208 35953318 -123646465 + ID_B1 SINE B4 113 217 -7 7 859 293 299 78 15 chr3 35953371 35953575 -123646208 + L1_Mur3 LINE L1 3085 3301 -2579 7 859 1438 223 55 50 chr3 35953603 35954004 -123645779 + MTD LTR MaLR 6 408 -11 7 859 1042 286 126 10 chr3 35954193 35954581 -123645202 - Lx7 LINE L1 -421 7275 6843 7 859 847 273 240 6 chr3 35954639 35954993 -123644790 - Lx7 LINE L1 -1196 6500 6064 7 859 468 146 0 0 chr3 35955074 35955177 -123644606 + (GA)n Simple_repeat Simple_repeat 1 103 0 7 859 283 340 33 26 chr3 35955190 35955341 -123644442 + L1_Mur3 LINE L1 4423 4574 -1306 7 859 1329 306 44 24 chr3 35955363 35955471 -123644312 - L1_Mur3 LINE L1 -1605 4275 4162 7 859 1546 38 0 11 chr3 35955471 35955656 -123644127 + B2_Mm1a SINE B2 2 184 -9 7 859 1329 309 45 43 chr3 35955656 35956355 -123643428 - L1_Mur3 LINE L1 -1717 4169 3512 7 859 240 253 59 24 chr3 35956337 35956422 -123643361 - Lx3_Mus LINE L1 -1221 5788 5701 7 859 894 146 21 0 chr3 35956443 35956587 -123643196 - B1_Mus2 SINE Alu 0 147 1 7 859 712 228 77 6 chr3 35956604 35956785 -123642998 - L1_Mur3 LINE L1 -1289 4591 4398 7 859 288 0 0 0 chr3 35956786 35956818 -123642965 + (CA)n Simple_repeat Simple_repeat 1 32 0 7 859 486 0 0 0 chr3 35956818 35956871 -123642912 + (GA)n Simple_repeat Simple_repeat 2 55 0 7 859 4120 124 8 2 chr3 35957133 35958068 -123641715 - L1_Mur2 LINE L1 -4233 1644 703 7 859 1151 236 77 29 chr3 35958068 35958443 -123641340 - L1_Rod LINE L1 -2817 3030 2638 7 859 294 220 44 35 chr3 35958838 35958951 -123640832 + (CCCTAA)n Simple_repeat Simple_repeat 5 118 0 7 859 948 201 14 48 chr3 35959147 35959356 -123640427 - RLTR30 LTR ERV1 -177 202 1 7 859 406 216 99 0 chr3 35959356 35959455 -123640328 + B1_Mur1 SINE Alu 40 149 0 7 859 915 209 54 82 chr3 35959458 35959812 -123639971 + RLTR40 LTR ERVK 469 812 -5 7 859 602 228 44 6 chr3 35959905 35960064 -123639719 + MTD LTR MaLR 5 169 -250 7 859 422 236 64 16 chr3 35960072 35960197 -123639586 + MTD LTR MaLR 287 417 -2 7 859 999 244 0 5 chr3 35960583 35960785 -123638998 + B3 SINE B2 1 201 -15 7 859 333 0 0 0 chr3 35960786 35960823 -123638960 + (TAAAA)n Simple_repeat Simple_repeat 2 38 0 7 859 658 231 85 30 chr3 35961599 35961800 -123637983 + B3 SINE B2 1 212 -4 7 859 476 217 116 0 chr3 35961807 35961936 -123637847 - Lx6 LINE L1 -10 7450 7307 7 859 1190 88 0 132 chr3 35961932 35962167 -123637616 - L1_Mur1 LINE L1 -578 5308 5105 7 859 4467 204 41 5 chr3 35962175 35963033 -123636750 - Lx6 LINE L1 -431 7029 6141 7 859 354 172 0 0 chr3 35963036 35963100 -123636683 - ORR1C2 LTR MaLR -4 380 317 7 859 310 292 0 0 chr3 35963210 35963282 -123636501 + RSINE1 SINE B4 3 74 -91 7 859 441 0 0 0 chr3 35963333 35963382 -123636401 + (TAGA)n Simple_repeat Simple_repeat 2 50 0 7 859 884 206 103 145 chr3 35963474 35963854 -123635929 + RLTR14 LTR ERV1 15 378 -4 7 859 1391 95 16 0 chr3 35963995 35964184 -123635599 + B2_Mm2 SINE B2 2 193 -2 7 859 450 0 0 0 chr3 35964686 35964736 -123635047 + (CA)n Simple_repeat Simple_repeat 2 51 0 7 859 381 229 9 54 chr3 35965336 35965447 -123634336 - ID_B1 SINE B4 -2 222 117 7 859 765 306 88 17 chr3 35966276 35966741 -123633042 + L2 LINE L2 2213 2710 -709 7 859 738 201 7 7 chr3 35967164 35967309 -123632474 - B1_Mur1 SINE Alu -2 147 3 7 859 315 310 56 14 chr3 35969151 35969295 -123630488 - L1MD2 LINE L1 -76 6283 6134 7 859 227 146 0 18 chr3 35969496 35969552 -123630231 + (CCCTG)n Simple_repeat Simple_repeat 4 58 0 7 859 917 177 7 0 chr3 35969553 35969700 -123630083 - B1_Mur2 SINE Alu 0 149 2 7 859 549 285 25 38 chr3 35969748 35969905 -123629878 - RSINE1 SINE B4 0 165 11 7 859 783 278 109 31 chr3 35970187 35970507 -123629276 - MTEa LTR MaLR -5 374 30 7 859 8381 42 1 1 chr3 35970656 35972241 -123627542 - L1Md_F2 LINE L1 0 6582 4998 7 859 24 0 0 0 chr3 35973152 35973176 -123626607 + AT_rich Low_complexity Low_complexity 1 24 0 7 859 201 39 0 0 chr3 35973242 35973268 -123626515 + (TCTG)n Simple_repeat Simple_repeat 2 27 0 7 859 191 279 60 51 chr3 35973841 35973958 -123625825 - MIRb SINE MIR -115 153 36 7 859 410 234 78 31 chr3 35977779 35977907 -123621876 - B1_Mur1 SINE Alu -5 144 11 7 859 795 234 33 5 chr3 35977924 35978134 -123621649 - B3 SINE B2 0 216 1 7 859 277 303 98 46 chr3 35978268 35978462 -123621321 - L1M4 LINE L1 -435 5739 5536 7 859 1111 240 43 74 chr3 35979221 35979612 -123620171 - MTEa LTR MaLR 0 379 1 7 859 1128 278 59 8 chr3 35982028 35982401 -123617382 - Lx7 LINE L1 -426 7270 6879 7 859 285 293 140 20 chr3 35982624 35982774 -123617009 + MIRb SINE MIR 29 196 -72 7 859 567 0 0 0 chr3 35982774 35982837 -123616946 + (TA)n Simple_repeat Simple_repeat 1 63 0 7 859 1551 191 163 33 chr3 35982951 35983708 -123616075 - L1_Mur3 LINE L1 -4291 1589 735 7 859 234 0 0 0 chr3 35986259 35986285 -123613498 + (TG)n Simple_repeat Simple_repeat 2 27 0 7 859 1146 76 0 25 chr3 35990671 35990832 -123608951 + L1_Mus1 LINE L1 6411 6567 0 7 859 4758 74 8 2 chr3 35991147 35991767 -123608016 + L1_Mus1 LINE L1 5943 6566 -1 7 859 286 237 103 0 chr3 35991919 35992016 -123607767 - RSINE1 SINE B4 -15 150 44 7 859 4591 157 60 43 chr3 35992252 35993155 -123606628 - Lx2B LINE L1 0 7000 6083 7 859 398 169 110 22 chr3 35993155 35993246 -123606537 - RLTR25B LTR ERVK -756 272 174 7 859 23 0 0 0 chr3 35993299 35993322 -123606461 + AT_rich Low_complexity Low_complexity 1 23 0 7 859 425 339 109 0 chr3 35993638 35993803 -123605980 + B3A SINE B2 1 183 -15 7 859 719 238 69 6 chr3 35993980 35994153 -123605630 + B3A SINE B2 1 184 -14 8 859 430 218 0 0 chr3 35994162 35994240 -123605543 + B1_Mus2 SINE Alu 3 80 -67 8 859 22 70 0 0 chr3 35994252 35994295 -123605488 + AT_rich Low_complexity Low_complexity 1 43 0 8 859 465 187 21 10 chr3 35994433 35994540 -123605243 + ORR1C1 LTR MaLR 1 101 -293 8 859 772 170 7 13 chr3 35994540 35994689 -123605094 - RMER16 LTR ERVK 0 533 386 8 859 16399 106 41 22 chr3 35994707 35996344 -123603439 - RMER16-int LTR ERVK -83 5323 3674 8 859 180 0 0 0 chr3 35996344 35996364 -123603419 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 8 859 16399 106 41 22 chr3 35996364 35997239 -123602544 - RMER16-int LTR ERVK -1733 3673 2764 8 859 270 145 26 104 chr3 35997301 35997349 -123602434 - RLTR13D3 LTR ERVK -61 1053 1010 8 859 7477 11 2 5 chr3 35997349 35998173 -123601610 + RLTR13B2 LTR ERVK 1 822 0 8 859 270 145 26 104 chr3 35998173 35998201 -123601582 - RLTR13D3 LTR ERVK -105 1009 983 8 859 256 105 0 0 chr3 35998483 35998521 -123601262 - B2_Mm2 SINE B2 -157 38 1 8 859 1191 62 0 0 chr3 35998727 35998873 -123600910 - B1_Mus2 SINE Alu 0 147 2 8 859 5333 108 45 14 chr3 35999183 35999998 -123599785 - RMER16-int LTR ERVK -2634 2772 1932 8 859 1709 106 8 0 chr3 36000000 36000246 -123599537 - RMER16-int LTR ERVK -3477 1929 1682 1 859 2617 183 86 10 chr3 36000247 36000749 -123599034 - RMER16-int LTR ERVK -4831 575 36 1 859 1661 81 5 5 chr3 36000890 36001152 -123598631 - ORR1A2 LTR MaLR -2 327 74 2 859 387 284 7 54 chr3 36001112 36001261 -123598522 + B4A SINE B4 149 290 -2 3 859 599 227 15 102 chr3 36001459 36001655 -123598128 + B3A SINE B2 4 182 -16 4 859 267 140 0 0 chr3 36001661 36001711 -123598072 + (CA)n Simple_repeat Simple_repeat 1 50 0 5 859 414 0 0 0 chr3 36002532 36002578 -123597205 + (CA)n Simple_repeat Simple_repeat 2 47 0 6 859 3359 54 0 2 chr3 36002581 36002986 -123596797 - MTB_Mm LTR MaLR 0 407 4 7 859 396 0 0 0 chr3 36002986 36003030 -123596753 + (CA)n Simple_repeat Simple_repeat 2 45 0 8 859 22 70 0 0 chr3 36003215 36003258 -123596525 + AT_rich Low_complexity Low_complexity 1 43 0 9 859 352 248 68 0 chr3 36003283 36003400 -123596383 + L1MC LINE L1 4789 4913 -1233 1 859 1150 146 12 124 chr3 36003661 36003911 -123595872 - URR1A DNA MER1_type -2 224 3 1 859 229 290 0 0 chr3 36004367 36004429 -123595354 - ID4 SINE ID 0 83 22 1 859 976 104 189 6 chr3 36004437 36004601 -123595182 - B2_Mm2 SINE B2 -1 194 1 1 859 1178 148 47 13 chr3 36004861 36005093 -123594690 + ORR1B2 LTR MaLR 120 359 -8 1 859 488 227 8 16 chr3 36005231 36005352 -123594431 + MTC LTR MaLR 1 120 -301 1 859 18279 20 0 0 chr3 36005353 36008119 -123591664 - L1Md_A LINE L1 0 6582 3816 1 859 1433 192 45 17 chr3 36008119 36008411 -123591372 + MTC LTR MaLR 113 412 -9 1 859 2519 187 21 52 chr3 36008665 36009223 -123590560 - RMER15 LTR ERVL -34 541 1 1 859 1150 200 19 0 chr3 36009615 36009825 -123589958 + B3 SINE B2 2 215 -1 1 859 3699 131 65 3 chr3 36009874 36010502 -123589281 - L1_Mur2 LINE L1 -918 4959 4293 1 859 4870 155 32 11 chr3 36010502 36010632 -123589151 + Lx5 LINE L1 6227 6356 -694 2 859 2400 173 87 20 chr3 36010632 36011127 -123588656 + RLTR11A LTR ERVK 1 528 0 2 859 4870 155 32 11 chr3 36011127 36011803 -123587980 + Lx5 LINE L1 6357 7050 0 2 859 8936 123 58 20 chr3 36011827 36014446 -123585337 + Lx2B LINE L1 4301 7000 0 2 859 462 36 0 0 chr3 36014459 36014515 -123585268 + (GAA)n Simple_repeat Simple_repeat 1 56 0 2 859 438 20 0 0 chr3 36014506 36014557 -123585226 + (GA)n Simple_repeat Simple_repeat 2 52 0 2 859 629 182 16 24 chr3 36014576 36014700 -123585083 - RLTR14-int LTR ERV1 -252 5065 4943 2 859 1110 211 0 209 chr3 36014928 36015330 -123584453 - RMER19C LTR ERVK 0 611 294 2 859 504 0 0 0 chr3 36015331 36015387 -123584396 + (TTTC)n Simple_repeat Simple_repeat 3 58 0 2 859 5361 30 0 3 chr3 36016723 36017350 -123582433 + L1Md_F2 LINE L1 5958 6582 0 2 859 369 154 0 0 chr3 36017350 36017415 -123582368 - RMER19C LTR ERVK -546 65 1 2 859 7252 160 25 42 chr3 36017415 36017888 -123581895 - RLTR14-int LTR ERV1 -833 4484 4020 2 859 3006 76 30 2 chr3 36017888 36018295 -123581488 - BGLII LTR ERVK 0 421 4 2 859 7252 160 25 42 chr3 36018295 36019159 -123580624 - RLTR14-int LTR ERV1 -1298 4019 3170 2 859 551 231 15 44 chr3 36019168 36019304 -123580479 - RMER10B LTR ERVL -10 388 257 3 859 5995 132 26 3 chr3 36019850 36020732 -123579051 + RMER19B LTR ERVK 1 902 0 3 859 1998 123 77 21 chr3 36021479 36021819 -123577964 + RLTR15 LTR ERVK 1 359 0 3 859 307 257 0 26 chr3 36022031 36022107 -123577676 + B1_Mur4 SINE Alu 33 106 -44 3 859 2253 99 9 18 chr3 36022170 36022500 -123577283 + ORR1A2 LTR MaLR 1 327 0 3 859 1131 103 57 0 chr3 36022500 36022675 -123577108 + ORR1A2-int LTR MaLR 1 185 -1778 3 859 232 266 0 0 chr3 36022922 36022986 -123576797 + A-rich Low_complexity Low_complexity 1 64 0 3 859 486 265 104 60 chr3 36023014 36023361 -123576422 - RLTR9E LTR ERVK -1 408 9 3 859 319 269 28 84 chr3 36023503 36023645 -123576138 - ETnERV2-int LTR ERVK -32 6510 6377 3 859 4254 31 0 0 chr3 36023792 36024274 -123575509 + LTRIS_Mm LTR ERV1 1 482 0 3 859 24546 125 25 31 chr3 36024274 36029532 -123570251 + MuRRS-int LTR ERV1 1 5555 -2001 3 859 4286 27 0 0 chr3 36029533 36030015 -123569768 + LTRIS_Mm LTR ERV1 1 482 0 3 859 390 281 23 23 chr3 36030016 36030187 -123569596 - RLTR6-int LTR ERV1 -139 7639 7469 3 859 1200 259 13 29 chr3 36030462 36030776 -123569007 - ETnERV2-int LTR ERVK -1205 6201 5893 3 859 8328 239 45 19 chr3 36030773 36033106 -123566677 - ETnERV2-int LTR ERVK -1810 5596 2441 3 859 2806 310 24 48 chr3 36033159 36034299 -123565484 - ETnERV2-int LTR ERVK -5074 2332 585 3 859 26 0 0 0 chr3 36034325 36034351 -123565432 + AT_rich Low_complexity Low_complexity 1 26 0 3 859 452 254 73 116 chr3 36034885 36035117 -123564666 - RLTR9E LTR ERVK 0 437 199 4 859 5371 132 20 7 chr3 36035294 36036270 -123563513 + ORR1A2-int LTR MaLR 844 1963 0 4 859 2238 103 19 3 chr3 36036270 36036592 -123563191 + ORR1A2 LTR MaLR 1 327 0 4 859 292 222 0 0 chr3 36036671 36036725 -123563058 - RodERV21-int LTR ERV1 -4100 891 838 4 859 472 274 40 0 chr3 36037254 36037378 -123562405 - RMER10B LTR ERVL 0 398 270 4 859 2221 169 37 72 chr3 36037654 36038114 -123561669 - RLTR14-int LTR ERV1 -2141 3176 2733 4 859 2934 176 14 124 chr3 36038154 36038347 -123561436 - RLTR14-int LTR ERV1 -2588 2729 2549 4 859 465 66 0 0 chr3 36038347 36038408 -123561375 + (TATG)n Simple_repeat Simple_repeat 3 63 0 4 859 2934 176 14 124 chr3 36038408 36038948 -123560835 - RLTR14-int LTR ERV1 -2769 2548 2077 4 859 342 253 69 69 chr3 36039589 36039763 -123560020 + L1M3 LINE L1 3439 3612 -2528 4 859 738 249 50 30 chr3 36039773 36039893 -123559890 + B3 SINE B2 2 127 -89 4 859 662 216 122 108 chr3 36039893 36040329 -123559454 - RMER10A LTR ERVL 0 442 1 4 859 738 249 50 30 chr3 36040329 36040407 -123559376 + B3 SINE B2 128 204 -12 4 859 389 66 16 0 chr3 36040438 36040499 -123559284 + (TA)n Simple_repeat Simple_repeat 1 62 0 4 859 29978 102 6 6 chr3 36040589 36043980 -123555803 + L1_Mus2 LINE L1 1550 4947 -936 5 859 2796 28 0 0 chr3 36043980 36044302 -123555481 - RLTRETN_Mm LTR ERVK 0 322 1 5 107 29978 77 4 7 chr3 36044302 36045926 -123553857 + L1_Mus2 LINE L1 4948 6565 -1 5 860 961 110 19 6 chr3 36045946 36046102 -123553681 - B2_Mm2 SINE B2 -23 172 15 5 860 233 250 0 18 chr3 36046104 36046161 -123553622 + L1M3 LINE L1 3697 3752 -2391 4 860 256 216 0 0 chr3 36046174 36046225 -123553558 + RSINE1 SINE B4 5 55 -110 5 860 191 36 36 0 chr3 36046811 36046839 -123552944 + (TATAA)n Simple_repeat Simple_repeat 5 33 0 5 860 397 291 0 0 chr3 36047176 36047310 -123552473 + L1_Mur3 LINE L1 3291 3424 -2456 5 860 279 329 98 65 chr3 36047853 36048159 -123551624 + MLT1H LTR MaLR 3 318 -231 5 860 747 206 0 0 chr3 36048917 36049077 -123550706 + (TA)n Simple_repeat Simple_repeat 2 161 0 5 860 3414 40 2 0 chr3 36049198 36049593 -123550190 - MTA_Mm LTR MaLR 0 396 1 5 860 260 302 0 44 chr3 36051236 36051326 -123548457 - L1M3de LINE L1 -6398 255 170 5 860 276 267 124 8 chr3 36051483 36051604 -123548179 - RSINE1 SINE B4 -13 152 18 6 860 590 263 102 72 chr3 36052084 36052988 -123546795 - RLTR42-int LTR ERVK -3385 2752 1870 6 860 1444 235 73 160 chr3 36053249 36053998 -123545785 - RLTR42-int LTR ERVK -3734 1788 1105 6 860 561 125 0 0 chr3 36055436 36055524 -123544259 + (TA)n Simple_repeat Simple_repeat 1 88 0 6 860 719 262 0 0 chr3 36055538 36055683 -123544100 - RSINE1 SINE B4 -17 148 4 6 860 1146 42 7 0 chr3 36056125 36056267 -123543516 + B1_Mus2 SINE Alu 5 147 0 6 860 208 135 0 0 chr3 36056271 36056308 -123543475 + (CAAAA)n Simple_repeat Simple_repeat 4 40 0 6 860 478 266 37 25 chr3 36056928 36057090 -123542693 + MER67A LTR ERV1 21 184 -359 6 860 273 336 0 9 chr3 36057166 36057274 -123542509 + G-rich Low_complexity Low_complexity 3 109 0 6 860 355 285 21 21 chr3 36058435 36058575 -123541208 + MurSatRep1 Unknown Unknown 605 744 -1393 6 860 2426 64 45 0 chr3 36058626 36058939 -123540844 + ORR1A2 LTR MaLR 1 327 0 6 860 10729 130 76 10 chr3 36058940 36060780 -123539003 + ORR1A2-int LTR MaLR 2 1963 0 6 860 2329 101 3 12 chr3 36060780 36061110 -123538673 + ORR1A2 LTR MaLR 1 327 0 6 860 350 282 23 0 chr3 36062617 36062748 -123537035 - L1MB2 LINE L1 -9 6162 6029 7 860 252 0 0 0 chr3 36062784 36062812 -123536971 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 7 860 456 269 32 29 chr3 36063911 36065048 -123534735 + MMSAT4 Satellite Satellite 1 1140 0 7 860 1547 33 27 0 chr3 36065394 36065577 -123534206 + B2_Mm1t SINE B2 1 188 -5 7 860 361 285 105 8 chr3 36065994 36066118 -123533665 - RSINE1 SINE B4 -19 146 11 7 860 386 275 167 59 chr3 36067280 36067585 -123532198 - MTD LTR MaLR -14 405 40 7 860 2281 161 60 0 chr3 36068215 36068612 -123531171 - RMER1B Other Other 0 1066 646 7 860 610 242 8 8 chr3 36069104 36069233 -123530550 + RSINE1 SINE B4 2 130 -35 7 860 1045 202 5 14 chr3 36069269 36069485 -123530298 - B3 SINE B2 -2 214 1 7 860 246 338 12 54 chr3 36069575 36069741 -123530042 + MLT1C LTR MaLR 290 448 -19 7 860 467 313 108 60 chr3 36070189 36070505 -123529278 + MTEb LTR MaLR 49 379 0 8 860 764 21 11 0 chr3 36070556 36070650 -123529133 + (TC)n Simple_repeat Simple_repeat 1 95 0 8 860 796 154 165 60 chr3 36071023 36071102 -123528681 - URR1A DNA MER1_type 0 226 159 8 860 1274 94 33 0 chr3 36071102 36071282 -123528501 - B2_Mm1a SINE B2 -7 186 1 8 860 796 154 165 60 chr3 36071282 36071402 -123528381 - URR1A DNA MER1_type -68 158 6 8 860 470 241 68 8 chr3 36073112 36073229 -123526554 - B3A SINE B2 -72 126 3 8 860 1005 23 23 0 chr3 36073529 36073661 -123526122 + (TCTCCC)n Simple_repeat Simple_repeat 5 139 0 8 860 381 301 48 0 chr3 36073671 36073774 -123526009 + B3A SINE B2 3 110 -88 8 860 996 192 28 46 chr3 36073863 36074081 -123525702 - B3 SINE B2 0 216 3 8 860 730 273 5 11 chr3 36074092 36074281 -123525502 - B3A SINE B2 -10 188 1 8 860 4216 60 20 7 chr3 36074293 36074860 -123524923 - L1Md_F2 LINE L1 0 6582 6026 8 860 2188 199 105 6 chr3 36075800 36076305 -123523478 + Lx9 LINE L1 7088 7642 -2 9 860 624 207 29 63 chr3 36076836 36077011 -123522772 + B3 SINE B2 7 175 -41 9 860 549 0 0 0 chr3 36077949 36078010 -123521773 + (TCCA)n Simple_repeat Simple_repeat 3 63 0 9 860 21 0 0 0 chr3 36080556 36080577 -123519206 + AT_rich Low_complexity Low_complexity 1 21 0 9 860 288 294 211 23 chr3 36082928 36083227 -123516556 + Charlie2b DNA MER1_type 286 640 -2142 9 860 1351 210 81 15 chr3 36084190 36084524 -123515259 + Lx3C LINE L1 6633 6996 -4 9 860 22 0 0 0 chr3 36084654 36084676 -123515107 + AT_rich Low_complexity Low_complexity 1 22 0 9 860 7417 215 44 19 chr3 36085016 36086338 -123513445 + Lx7 LINE L1 6023 7349 -347 9 860 765 85 0 0 chr3 36086338 36086444 -123513339 + (TG)n Simple_repeat Simple_repeat 2 107 0 9 860 7417 215 44 19 chr3 36086444 36086754 -123513029 + Lx7 LINE L1 7350 7696 0 9 860 315 263 100 10 chr3 36088784 36088884 -123510899 + PB1 SINE Alu 12 120 -7 9 860 423 0 0 0 chr3 36089072 36089119 -123510664 + (TC)n Simple_repeat Simple_repeat 2 48 0 1 860 270 56 0 0 chr3 36089119 36089154 -123510629 + (TG)n Simple_repeat Simple_repeat 1 36 0 1 860 404 254 128 66 chr3 36089213 36089470 -123510313 - B4A SINE B4 -18 274 2 1 860 1306 199 81 79 chr3 36089602 36089640 -123510143 - Lx7 LINE L1 -4 7692 7653 1 860 5346 42 3 0 chr3 36089640 36090279 -123509504 - L1Md_F2 LINE L1 -2 6580 5940 1 860 1306 199 81 79 chr3 36090279 36090660 -123509123 - Lx7 LINE L1 -44 7652 7273 1 860 281 311 8 63 chr3 36091862 36091989 -123507794 - B4A SINE B4 -161 131 12 1 860 794 191 14 0 chr3 36092629 36092776 -123507007 - B1_Mur4 SINE Alu 0 150 2 1 860 330 26 0 0 chr3 36092890 36092929 -123506854 + (TG)n Simple_repeat Simple_repeat 1 39 0 1 860 213 39 0 0 chr3 36093530 36093556 -123506227 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 1 860 301 291 99 33 chr3 36093600 36093721 -123506062 - Lx7 LINE L1 -375 7321 7193 1 860 10239 171 25 24 chr3 36093773 36096910 -123502873 - Lx6 LINE L1 -182 7278 4141 1 860 4715 157 56 65 chr3 36096908 36097172 -123502611 - Lx6 LINE L1 -3564 2316 2061 1 860 243 0 0 0 chr3 36097172 36097199 -123502584 + (TGG)n Simple_repeat Simple_repeat 3 29 0 1 860 4715 157 56 65 chr3 36097199 36097848 -123501935 - Lx6 LINE L1 -3820 2060 1426 1 860 433 0 35 0 chr3 36097848 36097905 -123501878 + (TTA)n Simple_repeat Simple_repeat 2 60 0 1 860 1181 50 0 0 chr3 36097907 36098048 -123501735 - B1_Mus2 SINE Alu -6 141 1 1 860 5167 194 81 15 chr3 36098048 36099306 -123500477 - Lx6 LINE L1 -4455 1425 56 1 860 233 306 153 0 chr3 36101262 36101347 -123498436 - MLT1D LTR MaLR -132 373 276 1 860 308 35 16 49 chr3 36101484 36101545 -123498238 + (TTTA)n Simple_repeat Simple_repeat 2 60 0 1 860 1136 68 0 7 chr3 36101552 36101699 -123498084 - B1_Mus2 SINE Alu -1 146 1 1 860 299 356 0 9 chr3 36101706 36101811 -123497972 - MLT1D LTR MaLR -388 117 14 1 860 450 158 56 12 chr3 36102260 36102420 -123497363 + (CAGAGA)n Simple_repeat Simple_repeat 2 168 0 1 860 817 190 56 6 chr3 36102958 36103269 -123496514 - Lx9 LINE L1 -2 7642 7295 1 860 294 278 45 18 chr3 36103338 36103448 -123496335 - ID_B1 SINE B4 -34 190 78 1 860 4313 161 47 0 chr3 36103571 36104318 -123495465 + L1_Mur2 LINE L1 5077 5858 -19 1 860 346 260 134 51 chr3 36104363 36104639 -123495144 + RMER17C LTR ERVK 84 382 -28 1 860 432 183 0 5 chr3 36104639 36104720 -123495063 + Lx5 LINE L1 6516 6618 -440 1 860 568 163 22 44 chr3 36104734 36104869 -123494914 + Lx5 LINE L1 6914 7045 -5 1 860 252 186 229 0 chr3 36104895 36104965 -123494818 + ORR1D1-int LTR MaLR 1272 1357 -13 1 860 378 288 30 53 chr3 36104972 36105025 -123494758 + ORR1D1 LTR MaLR 1 51 -323 1 860 579 283 24 62 chr3 36105025 36105398 -123494385 + RLTR10D LTR ERVK 1 359 0 1 860 378 288 30 53 chr3 36105398 36105464 -123494319 + ORR1D1 LTR MaLR 52 117 -257 1 860 896 75 2 14 chr3 36105464 36105619 -123494164 + B1_Mus1 SINE Alu 2 149 -1 1 860 713 201 99 16 chr3 36105637 36105829 -123493954 + ORR1D1 LTR MaLR 167 374 0 1 860 309 26 0 0 chr3 36106754 36106792 -123492991 + (CAA)n Simple_repeat Simple_repeat 2 39 0 1 860 279 0 0 0 chr3 36108534 36108565 -123491218 + (TA)n Simple_repeat Simple_repeat 1 31 0 1 860 1202 306 67 59 chr3 36108602 36109211 -123490572 - Lx8 LINE L1 -62 7411 6798 1 860 247 273 22 11 chr3 36110511 36110600 -123489183 - LTR75 LTR ERVL -453 109 20 1 860 1380 102 0 5 chr3 36111105 36111292 -123488491 - B2_Mm2 SINE B2 -9 186 1 1 860 756 0 0 0 chr3 36111625 36111709 -123488074 + (TTC)n Simple_repeat Simple_repeat 2 85 0 1 860 22 35 0 0 chr3 36111742 36111771 -123488012 + AT_rich Low_complexity Low_complexity 1 29 0 1 860 225 176 39 0 chr3 36111980 36112031 -123487752 + (TTTA)n Simple_repeat Simple_repeat 2 54 0 1 860 215 271 87 67 chr3 36112346 36112496 -123487287 + MER5B DNA MER1_type 1 153 -25 1 860 1345 133 13 68 chr3 36114061 36114295 -123485488 + URR1B DNA MER1_type 5 225 0 1 860 181 331 31 43 chr3 36114451 36114612 -123485171 + L2 LINE L2 329 487 -2932 1 860 271 121 0 33 chr3 36115476 36115536 -123484247 + (GGGTG)n Simple_repeat Simple_repeat 4 61 0 1 860 718 273 128 39 chr3 36115536 36115894 -123483889 + L1_Mur3 LINE L1 5354 5780 -511 1 860 434 239 6 0 chr3 36115922 36116098 -123483685 + (CA)n Simple_repeat Simple_repeat 2 178 0 1 860 227 278 167 0 chr3 36116131 36116221 -123483562 + L1_Mur3 LINE L1 5802 5906 -397 1 860 735 44 0 0 chr3 36116625 36116716 -123483067 + (CA)n Simple_repeat Simple_repeat 2 92 0 1 860 978 170 25 40 chr3 36116716 36116918 -123482865 + ORR1D1 LTR MaLR 176 374 0 1 860 765 274 52 15 chr3 36117083 36117400 -123482383 + ORR1D1 LTR MaLR 1 353 -6 1 860 192 77 0 0 chr3 36117411 36117437 -123482346 + (GGGAGA)n Simple_repeat Simple_repeat 4 29 0 1 860 975 130 6 17 chr3 36117438 36117618 -123482165 + GA-rich Low_complexity Low_complexity 3 180 0 1 860 279 197 0 15 chr3 36117942 36118009 -123481774 - MER5A1 DNA MER1_type -10 156 91 1 860 254 50 25 0 chr3 36118702 36118742 -123481041 + (TTTG)n Simple_repeat Simple_repeat 2 42 0 1 860 280 207 254 17 chr3 36119081 36119199 -123480584 - B1F1 SINE Alu 0 149 4 1 860 414 0 0 0 chr3 36120707 36120753 -123479030 + (GA)n Simple_repeat Simple_repeat 2 47 0 1 860 549 126 0 0 chr3 36121688 36121799 -123477984 + (TC)n Simple_repeat Simple_repeat 1 111 0 1 860 399 193 0 0 chr3 36121800 36121883 -123477900 + (TG)n Simple_repeat Simple_repeat 1 83 0 1 860 336 80 0 0 chr3 36121884 36121934 -123477849 - HAL1-3A_ME LINE L1 -840 2018 1969 1 860 315 262 147 33 chr3 36122025 36122175 -123477608 - L1MDa LINE L1 -535 6035 5869 1 860 325 333 44 40 chr3 36122222 36122504 -123477279 - B4A SINE B4 -4 288 11 1 860 321 271 85 39 chr3 36122515 36122787 -123476996 - L1MDa LINE L1 -772 5861 5577 1 860 684 96 59 12 chr3 36123117 36123454 -123476329 + (CA)n Simple_repeat Simple_repeat 1 352 0 1 860 254 132 19 0 chr3 36123471 36123524 -123476259 + (CA)n Simple_repeat Simple_repeat 2 55 0 1 860 375 228 82 82 chr3 36123538 36123734 -123476049 - L1MA9 LINE L1 -394 5918 5723 1 860 756 253 55 4 chr3 36123751 36123989 -123475794 - L1_Mur3 LINE L1 -1545 4335 4086 1 860 1280 261 125 52 chr3 36124275 36125218 -123474565 - L1MDa LINE L1 -3750 2787 1768 1 860 342 123 0 0 chr3 36125218 36125275 -123474508 + (ATG)n Simple_repeat Simple_repeat 1 57 0 1 860 1280 264 140 49 chr3 36125275 36125464 -123474319 - L1MDa LINE L1 -4866 1767 1546 1 860 1657 183 82 72 chr3 36125835 36125988 -123473795 + ORR1C2 LTR MaLR 4 171 -213 1 860 861 60 7 15 chr3 36125988 36126123 -123473660 + (TCTCCC)n Simple_repeat Simple_repeat 6 139 0 1 860 1657 183 82 72 chr3 36126123 36126346 -123473437 + ORR1C2 LTR MaLR 172 384 0 1 860 508 255 72 88 chr3 36126511 36126798 -123472985 - L1MDa LINE L1 -5080 1553 1190 1 860 466 349 35 30 chr3 36126802 36126920 -123472863 - ID_B1 SINE B4 -25 199 82 1 860 336 83 0 0 chr3 36126920 36126968 -123472815 + (TTTG)n Simple_repeat Simple_repeat 2 49 0 1 860 466 349 35 30 chr3 36126968 36127047 -123472736 - ID SINE ID -143 81 1 1 860 293 0 0 26 chr3 36128149 36128187 -123471596 + (TTTTG)n Simple_repeat Simple_repeat 2 38 0 1 860 436 202 124 39 chr3 36128187 36128309 -123471474 - B1_Mur4 SINE Alu -10 140 7 1 860 268 305 50 72 chr3 36128431 36128611 -123471172 + MLT1B LTR MaLR 211 386 -4 1 860 2102 154 58 10 chr3 36129241 36129635 -123470148 - MTC LTR MaLR -8 413 1 1 860 536 301 50 5 chr3 36129655 36129855 -123469928 + RMER5 LTR ERV1 40 248 -286 1 860 680 233 19 6 chr3 36129929 36130089 -123469694 - B3 SINE B2 -6 210 49 1 860 535 257 169 6 chr3 36130385 36130557 -123469226 + B3 SINE B2 3 202 -14 1 860 33863 74 8 5 chr3 36132151 36137352 -123462431 + L1Md_F2 LINE L1 374 5586 -297 1 860 8044 55 6 4 chr3 36137352 36138346 -123461437 + L1Md_F2 LINE L1 5587 6582 0 1 860 204 40 0 0 chr3 36138464 36138489 -123461294 + (CA)n Simple_repeat Simple_repeat 2 26 0 1 860 302 314 63 14 chr3 36138507 36138649 -123461134 + RMER5 LTR ERV1 40 188 -346 1 860 200 122 0 24 chr3 36138666 36138708 -123461075 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 860 267 319 43 0 chr3 36138723 36138817 -123460966 - B1F1 SINE Alu -29 120 23 1 860 303 229 120 67 chr3 36138826 36138976 -123460807 - Lx7 LINE L1 0 7696 7539 1 860 1037 202 0 6 chr3 36138952 36139131 -123460652 - Lx6 LINE L1 -256 7204 7027 1 860 332 293 57 8 chr3 36139132 36139256 -123460527 + RMER5 LTR ERV1 202 331 -203 1 860 548 221 41 14 chr3 36139282 36139429 -123460354 - B3A SINE B2 -44 154 4 1 860 241 315 40 86 chr3 36139429 36139614 -123460169 + RMER5 LTR ERV1 325 500 -34 1 860 304 136 43 57 chr3 36140503 36140573 -123459210 + L1MB3 LINE L1 4246 4314 -1826 1 860 743 193 29 46 chr3 36140628 36140802 -123458981 + B2_Mm2 SINE B2 2 172 -23 1 860 2521 50 0 0 chr3 36140820 36141123 -123458660 + L1Md_F2 LINE L1 5284 5586 -297 1 860 7867 65 4 6 chr3 36141123 36142120 -123457663 + L1Md_F2 LINE L1 5587 6581 -1 1 860 822 70 0 0 chr3 36142122 36142236 -123457547 + (GGA)n Simple_repeat Simple_repeat 2 115 0 1 860 1136 142 106 4 chr3 36142238 36142465 -123457318 + MusHAL1 LINE L1 1295 1544 -1168 1 860 2923 9 0 0 chr3 36142467 36142789 -123456994 + RLTRETN_Mm LTR ERVK 1 322 0 1 860 234 0 0 0 chr3 36142816 36142842 -123456941 + (GAA)n Simple_repeat Simple_repeat 3 28 0 1 860 381 296 48 17 chr3 36142842 36142853 -123456930 + L1MB3 LINE L1 4392 4402 -1738 1 860 1024 128 0 11 chr3 36142853 36143034 -123456749 + (GGA)n Simple_repeat Simple_repeat 2 180 0 1 860 381 296 48 17 chr3 36143034 36143252 -123456531 + L1MB3 LINE L1 4403 4628 -1512 1 860 8785 32 0 2 chr3 36143261 36144791 -123454992 - L1Md_F3 LINE L1 0 6584 5058 1 860 602 308 43 25 chr3 36144828 36145108 -123454675 + B4A SINE B4 5 289 -3 1 860 227 293 0 0 chr3 36145113 36145171 -123454612 + (CATA)n Simple_repeat Simple_repeat 1 58 0 1 860 643 286 61 27 chr3 36145175 36145470 -123454313 + L1MB3 LINE L1 4644 4948 -1198 1 860 285 306 96 74 chr3 36145484 36145713 -123454070 - RMER2 LTR ERV1 0 567 334 1 860 275 45 45 0 chr3 36146052 36146096 -123453687 + RLTR41 LTR ERV1 1 46 -400 1 860 383 0 0 21 chr3 36146283 36146331 -123453452 + (TCTA)n Simple_repeat Simple_repeat 4 50 0 1 860 2159 144 49 44 chr3 36147517 36147925 -123451858 + RLTR41 LTR ERV1 37 446 0 1 860 987 281 151 44 chr3 36147925 36148891 -123450892 + L1MB3 LINE L1 5101 6173 -10 1 860 2293 8 0 0 chr3 36149010 36149263 -123450520 + L1Md_A LINE L1 6330 6582 0 1 860 363 182 0 0 chr3 36150054 36150120 -123449663 - B3A SINE B2 -132 66 1 1 860 672 291 95 22 chr3 36150502 36151038 -123448745 - L1MB7 LINE L1 -131 6053 5413 1 860 712 0 23 0 chr3 36151361 36151449 -123448334 + (TCTA)n Simple_repeat Simple_repeat 4 93 0 1 860 5124 108 30 19 chr3 36151449 36152225 -123447558 - Lx LINE L1 -8 6646 5863 1 860 6513 153 58 1 chr3 36152227 36153389 -123446394 - L1_Mur2 LINE L1 -829 5048 3820 1 860 9173 91 5 8 chr3 36153362 36154700 -123445083 - MusHAL1 LINE L1 -772 1940 606 1 860 246 128 0 0 chr3 36154700 36154739 -123445044 + (CATATA)n Simple_repeat Simple_repeat 6 44 0 1 860 3260 44 3 0 chr3 36154741 36155130 -123444653 + RLTR10 LTR ERVK 1 390 0 1 860 15078 37 36 59 chr3 36155140 36157131 -123442652 + RLTR10-int LTR ERVK 41 1986 -1 1 860 3248 46 3 0 chr3 36157131 36157520 -123442263 + RLTR10 LTR ERVK 1 390 0 1 860 446 152 11 0 chr3 36157521 36157613 -123442170 + (CATATA)n Simple_repeat Simple_repeat 6 98 0 2 860 3527 53 15 0 chr3 36157613 36158082 -123441701 - MusHAL1 LINE L1 -2108 604 129 2 860 514 311 63 14 chr3 36158071 36158293 -123441490 - L1MA4 LINE L1 -400 5900 5668 2 860 447 165 0 0 chr3 36158293 36158372 -123441411 + ORR1D1 LTR MaLR 1 79 -295 2 860 741 274 112 21 chr3 36158426 36158699 -123441084 - MTEa-int LTR MaLR -1307 273 1 2 860 517 259 41 20 chr3 36158699 36158845 -123440938 - MTEa LTR MaLR 0 379 231 2 860 1812 144 67 0 chr3 36158892 36159219 -123440564 - ORR1C1 LTR MaLR -11 367 19 2 860 975 248 15 5 chr3 36159604 36159807 -123439976 + B3 SINE B2 1 205 -11 2 860 767 159 65 0 chr3 36160020 36160158 -123439625 + B1_Mur3 SINE Alu 3 149 0 2 860 291 190 0 0 chr3 36160158 36160216 -123439567 + A-rich Low_complexity Low_complexity 1 58 0 2 860 507 291 24 12 chr3 36160539 36160706 -123439077 + Tigger5 DNA MER2_type 47 215 -2191 2 860 403 195 26 0 chr3 36161204 36161281 -123438502 + RMER5 LTR ERV1 99 177 -357 2 860 310 141 94 0 chr3 36161282 36161346 -123438437 + RMER5 LTR ERV1 465 534 0 2 860 201 121 0 0 chr3 36161508 36161541 -123438242 + (TG)n Simple_repeat Simple_repeat 1 33 0 2 860 31 26 0 0 chr3 36161778 36161816 -123437967 + AT_rich Low_complexity Low_complexity 1 38 0 2 860 1390 218 111 37 chr3 36163506 36163883 -123435900 - MTD LTR MaLR -1 418 14 2 860 264 195 0 0 chr3 36165028 36165050 -123434733 + polypyrimidine Low_complexity Low_complexity 62 83 0 2 860 988 129 11 6 chr3 36165050 36165229 -123434554 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 2 860 264 195 0 0 chr3 36165229 36165288 -123434495 + CT-rich Low_complexity Low_complexity 3 61 0 2 860 248 49 0 47 chr3 36165291 36165334 -123434449 + (TCTCTG)n Simple_repeat Simple_repeat 2 42 0 2 860 681 171 73 0 chr3 36165338 36165461 -123434322 - B1_Mus1 SINE Alu -11 137 6 2 860 468 278 37 6 chr3 36165784 36165930 -123433853 - L1MA6 LINE L1 -1 6299 6141 2 860 290 258 118 18 chr3 36165991 36166117 -123433666 + MIR SINE MIR 31 160 -102 2 860 364 245 0 9 chr3 36166288 36166399 -123433384 + (TATATG)n Simple_repeat Simple_repeat 2 111 0 2 860 24 32 0 0 chr3 36166411 36166442 -123433341 + AT_rich Low_complexity Low_complexity 1 31 0 2 860 189 74 0 0 chr3 36166442 36166469 -123433314 + (TG)n Simple_repeat Simple_repeat 2 28 0 2 860 334 250 57 45 chr3 36166472 36166560 -123433223 - RSINE1 SINE B4 -24 141 53 2 860 21 0 0 0 chr3 36168890 36168911 -123430872 + AT_rich Low_complexity Low_complexity 1 21 0 2 860 2374 183 50 31 chr3 36169736 36170254 -123429529 + RLTR24 LTR ERV1 2 529 0 2 860 2358 89 3 24 chr3 36171125 36171459 -123428324 - ORR1A2 LTR MaLR 0 327 1 2 860 512 171 9 0 chr3 36171542 36171647 -123428136 + RLTR42-int LTR ERVK 1110 1215 -4307 2 860 1181 219 5 0 chr3 36171908 36172132 -123427651 + RLTR14 LTR ERV1 47 271 -111 2 860 1165 239 90 57 chr3 36172190 36172912 -123426871 + RLTR42-int LTR ERVK 1862 2875 -3262 2 860 388 231 76 70 chr3 36173007 36173179 -123426604 + RLTR42-int LTR ERVK 2907 3079 -3058 2 860 489 249 81 41 chr3 36173454 36173626 -123426157 - RLTR41 LTR ERV1 0 446 268 2 860 565 207 118 30 chr3 36174043 36174294 -123425489 + RLTR42-int LTR ERVK 3737 3969 -2168 2 860 2189 95 122 131 chr3 36174533 36174967 -123424816 + RLTR23 LTR ERV1 1 430 0 2 860 26 74 0 0 chr3 36175608 36175662 -123424121 + AT_rich Low_complexity Low_complexity 1 54 0 2 107 854 290 65 50 chr3 36175677 36175938 -123423845 + B4A SINE B4 2 266 -26 2 861 444 19 0 0 chr3 36175938 36175991 -123423792 + (CA)n Simple_repeat Simple_repeat 1 53 0 2 861 344 119 17 0 chr3 36175991 36176050 -123423733 + (GGA)n Simple_repeat Simple_repeat 1 60 0 2 861 407 153 14 14 chr3 36176128 36176201 -123423582 - RMER5 LTR ERV1 -461 73 1 2 861 284 286 33 0 chr3 36177418 36177509 -123422274 - LTR37A LTR ERV1 -243 183 90 2 861 45 0 0 0 chr3 36177658 36177703 -123422080 + AT_rich Low_complexity Low_complexity 1 45 0 2 861 359 290 58 74 chr3 36178335 36178577 -123421206 + MER113 DNA MER1_type 3 240 -281 2 861 1153 62 0 7 chr3 36179987 36180132 -123419651 + B1_Mm SINE Alu 2 145 -2 2 861 1392 56 0 0 chr3 36180137 36180315 -123419468 + (GGAGAA)n Simple_repeat Simple_repeat 3 180 0 2 861 785 10 10 0 chr3 36180315 36180405 -123419378 + (GAA)n Simple_repeat Simple_repeat 3 93 0 2 861 566 325 72 43 chr3 36180405 36180682 -123419101 + RMER5 LTR ERV1 22 306 -228 2 861 711 253 0 20 chr3 36180723 36180872 -123418911 - B1_Mm SINE Alu -1 146 1 2 861 1411 167 30 4 chr3 36180976 36181211 -123418572 + RLTR24 LTR ERV1 1 241 -288 2 861 958 148 25 0 chr3 36181213 36181375 -123418408 + ORR1B2 LTR MaLR 2 167 -200 2 861 296 198 46 11 chr3 36181302 36181389 -123418394 - ORR1B2 LTR MaLR -199 168 79 2 861 198 136 0 0 chr3 36182099 36182143 -123417640 + (T)n Simple_repeat Simple_repeat 1 44 0 2 861 363 127 14 18 chr3 36182342 36182446 -123417337 - B2_Mm2 SINE B2 -11 184 47 2 861 1353 79 11 0 chr3 36182474 36182651 -123417132 - B2_Mm1t SINE B2 -14 179 1 2 861 1072 122 22 11 chr3 36182710 36182892 -123416891 - LTRIS3 LTR ERV1 0 512 329 2 861 4614 100 8 12 chr3 36183609 36184279 -123415504 + RLTR13C1 LTR ERVK 1 667 -316 2 861 38189 26 3 6 chr3 36184315 36190713 -123409070 - L1Md_T LINE L1 0 6582 205 2 861 2022 116 22 12 chr3 36190713 36191037 -123408746 + RLTR13C1 LTR ERVK 653 979 -4 2 861 1205 219 102 20 chr3 36191189 36191482 -123408301 + RMER5 LTR ERV1 5 321 -213 2 861 27 0 0 0 chr3 36191483 36191510 -123408273 + AT_rich Low_complexity Low_complexity 1 27 0 2 861 2610 257 130 15 chr3 36191510 36192420 -123407363 - Lx6 LINE L1 -26 7434 6210 2 861 2238 109 12 0 chr3 36192420 36192740 -123407043 - ORR1A2 LTR MaLR 0 327 4 2 861 2052 285 61 92 chr3 36192740 36192999 -123406784 - Lx6 LINE L1 -841 6209 5911 2 861 909 143 132 0 chr3 36193004 36193186 -123406597 + RMER5 LTR ERV1 320 525 -9 2 861 849 136 17 17 chr3 36193200 36193380 -123406403 + CT-rich Low_complexity Low_complexity 1 180 0 2 861 297 224 17 0 chr3 36193380 36193438 -123406345 + polypyrimidine Low_complexity Low_complexity 3 61 0 2 861 386 283 50 0 chr3 36194162 36194261 -123405522 + B1F SINE Alu 1 104 -45 2 861 1107 62 0 0 chr3 36195254 36195398 -123404385 + (CTG)n Simple_repeat Simple_repeat 1 144 0 2 861 574 296 7 7 chr3 36196292 36196428 -123403355 + B1F SINE Alu 1 136 -13 2 861 22 70 0 0 chr3 36196467 36196510 -123403273 + AT_rich Low_complexity Low_complexity 1 43 0 2 861 2115 158 43 6 chr3 36196606 36196955 -123402828 + ORR1B2 LTR MaLR 5 366 -1 2 861 475 171 160 27 chr3 36197166 36197316 -123402467 + Lx5 LINE L1 6880 7049 -1 2 861 308 215 16 24 chr3 36197785 36197909 -123401874 + GA-rich Low_complexity Low_complexity 5 127 0 2 861 546 0 135 0 chr3 36199261 36199461 -123400322 + (CCTG)n Simple_repeat Simple_repeat 1 227 0 2 861 207 0 0 0 chr3 36200386 36200409 -123399374 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 2 861 306 283 143 14 chr3 36201019 36201166 -123398617 + MIR SINE MIR 2 167 -95 2 861 17349 75 21 16 chr3 36201275 36201710 -123398073 - L1VL4 LINE L1 0 3559 3121 2 861 3531 25 0 0 chr3 36201710 36202106 -123397677 - MTA_Mm LTR MaLR 0 396 1 2 861 17349 76 21 16 chr3 36202106 36204462 -123395321 - L1VL4 LINE L1 -439 3120 769 2 861 240 86 0 0 chr3 36204462 36204497 -123395286 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 2 861 5049 99 16 30 chr3 36204497 36205083 -123394700 - L1VL4 LINE L1 -5534 768 188 2 861 222 326 187 7 chr3 36205197 36205336 -123394447 + MER5B DNA MER1_type 15 178 0 2 861 528 284 62 65 chr3 36205910 36206515 -123393268 + MER34B-int LTR ERV1 2546 3163 -2193 2 861 2358 160 115 11 chr3 36206552 36207013 -123392770 - RMER4B LTR ERVK -44 541 33 2 861 21 0 0 0 chr3 36207039 36207060 -123392723 + AT_rich Low_complexity Low_complexity 1 21 0 2 861 352 303 41 45 chr3 36207106 36207372 -123392411 + MER34B-int LTR ERV1 3343 3607 -1749 2 861 2094 242 53 22 chr3 36207373 36207918 -123391865 + RLTR20B1 LTR ERVK 2 563 0 2 861 493 306 138 66 chr3 36208333 36208875 -123390908 + MER34B-int LTR ERV1 3944 4524 -1663 2 861 390 244 22 0 chr3 36208897 36208987 -123390796 + MER57C2 LTR ERV1 343 434 0 2 861 443 262 42 45 chr3 36209186 36209348 -123390435 - ORR1E LTR MaLR 0 379 222 2 861 557 296 92 42 chr3 36209352 36209592 -123390191 - MTE2a LTR MaLR 0 379 128 2 861 252 111 0 0 chr3 36209630 36209675 -123390108 + (C)n Simple_repeat Simple_repeat 1 45 0 2 861 644 288 43 16 chr3 36210477 36210664 -123389119 - ORR1E LTR MaLR -167 192 1 2 861 270 73 0 0 chr3 36212551 36212592 -123387191 + (A)n Simple_repeat Simple_repeat 1 41 0 2 861 849 278 28 37 chr3 36212767 36213088 -123386695 + Lx9 LINE L1 2782 3099 -2748 2 861 4898 216 38 54 chr3 36213179 36214404 -123385379 + Lx9 LINE L1 3589 4792 -1055 2 861 3375 30 5 0 chr3 36214404 36214798 -123384985 + MTA_Mm LTR MaLR 1 396 0 2 861 4898 216 38 54 chr3 36214798 36215100 -123384683 + Lx9 LINE L1 4793 5092 -755 2 861 800 184 22 0 chr3 36215112 36215225 -123384558 + B1_Mur3 SINE Alu 10 122 -27 2 861 582 60 0 0 chr3 36215225 36215308 -123384475 + (CAAAC)n Simple_repeat Simple_repeat 2 84 0 2 861 800 184 22 0 chr3 36215308 36215330 -123384453 + B1_Mur3 SINE Alu 123 146 -3 2 861 216 0 0 0 chr3 36215361 36215385 -123384398 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 2 861 1555 221 89 102 chr3 36215387 36216232 -123383551 + Lx9 LINE L1 5109 5976 -1668 2 861 4561 222 75 35 chr3 36216257 36216817 -123382966 + Lx9 LINE L1 6133 6713 -931 2 861 583 13 26 0 chr3 36216817 36216893 -123382890 + (TA)n Simple_repeat Simple_repeat 2 79 0 2 861 4561 222 75 35 chr3 36216893 36217660 -123382123 + Lx9 LINE L1 6714 7509 -135 2 861 313 75 19 19 chr3 36217660 36217714 -123382069 + (CA)n Simple_repeat Simple_repeat 1 54 0 2 861 4561 222 75 35 chr3 36217714 36217835 -123381948 + Lx9 LINE L1 7510 7639 -5 2 861 627 225 76 46 chr3 36217847 36218085 -123381698 + L1M2 LINE L1 5364 5608 -683 2 861 271 240 23 23 chr3 36218229 36218361 -123381422 + (TATATG)n Simple_repeat Simple_repeat 3 134 0 2 861 682 263 101 68 chr3 36218380 36218673 -123381110 - B4 SINE B4 -18 274 8 2 861 2948 272 40 59 chr3 36218950 36220012 -123379771 + Lx8 LINE L1 6432 7473 0 2 861 226 232 70 28 chr3 36222095 36222166 -123377617 + L2 LINE L2 2492 2565 -854 2 861 1861 34 0 0 chr3 36222268 36222477 -123377306 + L1Md_F2 LINE L1 6355 6563 -19 2 861 189 0 0 0 chr3 36222480 36222501 -123377282 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 2 861 1087 51 63 28 chr3 36223024 36223166 -123376617 + B1_Mus1 SINE Alu 2 148 0 2 861 288 0 0 0 chr3 36223166 36223198 -123376585 + (CAAAAA)n Simple_repeat Simple_repeat 6 37 0 2 861 699 225 39 13 chr3 36223303 36223456 -123376327 + B3 SINE B2 55 211 -5 2 861 225 325 160 34 chr3 36223850 36224025 -123375758 + L2a LINE L2 3196 3392 -34 2 861 259 275 27 9 chr3 36224051 36224161 -123375622 + L1MD LINE L1 3667 3778 -2368 3 861 798 156 62 8 chr3 36224198 36224327 -123375456 + B3 SINE B2 1 136 -80 3 861 425 314 94 20 chr3 36224746 36224990 -123374793 - MER5C DNA MER1_type -50 263 2 3 861 332 279 136 0 chr3 36225266 36225413 -123374370 + Lx6 LINE L1 5089 5255 -885 3 861 1081 264 33 104 chr3 36225435 36225497 -123374286 + Lx6 LINE L1 5415 5477 -703 3 861 345 47 0 0 chr3 36225497 36225540 -123374243 + (GGGA)n Simple_repeat Simple_repeat 4 46 0 3 861 4636 165 55 26 chr3 36225540 36226651 -123373132 + Lx6 LINE L1 5410 6581 -879 3 861 421 171 184 0 chr3 36226652 36226728 -123373055 + 4.5SRNA scRNA scRNA 2 91 -3 3 861 851 197 0 20 chr3 36226730 36226880 -123372903 + B1_Mur4 SINE Alu 1 147 -3 3 861 3115 197 94 135 chr3 36226893 36227213 -123372570 + Lx6 LINE L1 6566 6877 -583 3 861 853 33 0 109 chr3 36227213 36227415 -123372368 + (CA)n Simple_repeat Simple_repeat 1 180 0 3 861 3115 197 94 135 chr3 36227415 36228027 -123371756 + Lx6 LINE L1 6878 7460 0 3 861 683 270 146 39 chr3 36228112 36228474 -123371309 + L1MB1 LINE L1 5559 5959 -230 3 861 688 264 71 0 chr3 36228941 36229123 -123370660 + B3A SINE B2 4 198 0 3 861 387 105 0 0 chr3 36229246 36229303 -123370480 + (TAA)n Simple_repeat Simple_repeat 1 57 0 3 861 412 220 140 62 chr3 36229431 36229610 -123370173 + Lx8 LINE L1 7281 7473 0 3 861 255 313 24 0 chr3 36229625 36229708 -123370075 - RMER1C Other Other -745 597 513 3 861 2219 209 99 23 chr3 36229685 36230249 -123369534 + RMER1C Other Other 736 1342 0 3 861 286 301 43 0 chr3 36230687 36230780 -123369003 + B1F SINE Alu 50 146 -3 3 861 269 250 0 0 chr3 36230790 36230842 -123368941 + ID4 SINE ID 2 53 -30 3 861 2004 136 28 3 chr3 36231637 36231954 -123367829 - ORR1B2 LTR MaLR 0 367 43 3 861 283 234 16 0 chr3 36231987 36232051 -123367732 + RLTR19C LTR ERVK 33 97 -409 3 861 485 285 74 31 chr3 36232262 36232425 -123367358 + RLTR33 LTR ERVK 448 617 -61 3 861 698 139 278 0 chr3 36232432 36232583 -123367200 - URR1A DNA MER1_type -25 201 9 3 861 512 312 74 29 chr3 36232780 36233024 -123366759 + MLT1C LTR MaLR 38 292 -175 3 861 236 263 18 0 chr3 36233056 36233113 -123366670 + MLT1C LTR MaLR 269 326 -64 3 861 342 256 40 1 chr3 36233596 36233695 -123366088 - B4A SINE B4 -184 108 3 3 861 506 146 0 10 chr3 36235994 36236091 -123363692 + GA-rich Low_complexity Low_complexity 3 98 0 3 861 301 244 51 13 chr3 36236091 36236170 -123363613 + HAL1-3A_ME LINE L1 2284 2365 -493 3 861 234 0 0 0 chr3 36236942 36236968 -123362815 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 3 861 237 304 158 22 chr3 36237123 36237483 -123362300 - L1M5 LINE L1 -1535 4611 4203 3 861 2762 73 53 0 chr3 36237836 36238177 -123361606 + RLTR10D LTR ERVK 1 359 0 3 861 213 287 27 29 chr3 36238429 36238527 -123361256 + MIRc SINE MIR 103 207 -61 3 861 266 287 72 27 chr3 36239065 36239176 -123360607 - MTD LTR MaLR 0 419 304 3 861 369 0 0 0 chr3 36239216 36239257 -123360526 + (TG)n Simple_repeat Simple_repeat 2 42 0 3 861 1303 268 48 23 chr3 36239578 36239935 -123359848 + MTE-int LTR MaLR 79 445 -1135 3 861 565 258 13 50 chr3 36239935 36240094 -123359689 + RSINE1 SINE B4 2 154 -11 3 861 1303 268 48 23 chr3 36240094 36240130 -123359653 + MTE-int LTR MaLR 446 482 -1098 3 861 468 327 82 49 chr3 36240145 36240412 -123359371 + MTE-int LTR MaLR 543 818 -762 3 861 284 53 0 0 chr3 36240883 36240921 -123358862 + B2_Mm2 SINE B2 1 38 -157 3 861 391 236 99 86 chr3 36241166 36241328 -123358455 + RLTR13D3 LTR ERVK 951 1114 0 3 861 2298 261 48 59 chr3 36241328 36241978 -123357805 + MTE-int LTR MaLR 807 1449 -131 3 861 186 43 0 0 chr3 36241996 36242019 -123357764 + (TCC)n Simple_repeat Simple_repeat 3 25 0 3 861 310 146 0 0 chr3 36242021 36242076 -123357707 - Lx LINE L1 -13 6641 6587 3 861 712 274 11 0 chr3 36242078 36242253 -123357530 + MTEb LTR MaLR 200 376 -3 3 861 1414 187 178 59 chr3 36242254 36242328 -123357455 - RLTR16 LTR ERVK -15 490 413 3 861 297 0 0 0 chr3 36242328 36242361 -123357422 + (CA)n Simple_repeat Simple_repeat 2 34 0 3 861 1414 187 178 59 chr3 36242361 36242547 -123357236 - RLTR16 LTR ERVK -93 412 211 3 861 1120 111 0 11 chr3 36242547 36242729 -123357054 + (TTC)n Simple_repeat Simple_repeat 1 180 0 3 861 1414 187 178 59 chr3 36242729 36242905 -123356878 - RLTR16 LTR ERVK -295 210 1 3 861 267 339 55 55 chr3 36242964 36243092 -123356691 - Tigger6b DNA MER2_type -1468 129 2 3 861 377 343 124 33 chr3 36243140 36243622 -123356161 - L2 LINE L2 -1615 1804 1279 3 861 783 134 0 0 chr3 36244043 36244162 -123355621 + B1_Mus1 SINE Alu 30 148 0 3 861 288 0 0 0 chr3 36246417 36246449 -123353334 + (A)n Simple_repeat Simple_repeat 1 32 0 3 861 366 80 0 0 chr3 36246567 36246617 -123353166 + (CAAG)n Simple_repeat Simple_repeat 2 51 0 3 861 219 36 0 0 chr3 36247088 36247116 -123352667 + (GTTTG)n Simple_repeat Simple_repeat 2 29 0 3 861 241 246 16 16 chr3 36247133 36247195 -123352588 - MTE2b LTR MaLR -38 341 280 3 861 255 328 16 0 chr3 36247512 36247576 -123352207 - ORR1E LTR MaLR -294 65 1 3 861 201 204 45 0 chr3 36247733 36247777 -123352006 + GA-rich Low_complexity Low_complexity 3 48 0 3 861 351 0 0 0 chr3 36247886 36247925 -123351858 + (TC)n Simple_repeat Simple_repeat 2 40 0 3 861 333 0 0 0 chr3 36247925 36247961 -123351822 + (TG)n Simple_repeat Simple_repeat 2 38 0 3 861 198 325 306 0 chr3 36248606 36248763 -123351020 + MIRb SINE MIR 48 252 -16 3 861 240 293 37 0 chr3 36249267 36249349 -123350434 - MLT1K LTR MaLR -26 569 485 3 861 395 301 101 8 chr3 36249552 36249675 -123350108 + PB1D10 SINE Alu 1 130 -19 3 861 2200 222 47 60 chr3 36249745 36250219 -123349564 + RLTR20B3 LTR ERVK 1 471 -106 3 861 414 0 0 0 chr3 36250219 36250265 -123349518 + (TG)n Simple_repeat Simple_repeat 1 46 0 3 861 2200 222 47 60 chr3 36250265 36250361 -123349422 + RLTR20B3 LTR ERVK 472 564 -13 3 861 568 217 80 29 chr3 36250394 36250579 -123349204 + B3 SINE B2 9 194 -1 3 861 30 0 0 0 chr3 36250582 36250612 -123349171 + AT_rich Low_complexity Low_complexity 1 30 0 3 861 388 128 0 25 chr3 36250698 36250778 -123349005 + GA-rich Low_complexity Low_complexity 1 78 0 3 861 253 414 19 0 chr3 36251892 36251996 -123347787 + LTR89 LTR ERVL? 542 647 -232 3 861 675 276 66 6 chr3 36252555 36252737 -123347046 + RMER30 DNA MER1_type 10 202 0 3 861 846 209 55 32 chr3 36253024 36253242 -123346541 - LTRIS4 LTR ERV1 0 507 285 3 861 225 289 117 55 chr3 36253774 36253812 -123345971 - MIR3 SINE MIR -39 169 130 3 861 423 0 0 0 chr3 36253812 36253859 -123345924 + (CAAAA)n Simple_repeat Simple_repeat 2 48 0 3 861 225 289 117 55 chr3 36253859 36253948 -123345835 - MIR3 SINE MIR -79 129 34 3 861 429 321 83 36 chr3 36254572 36254873 -123344910 - Kanga2_a DNA Tc2 -298 590 277 3 861 234 0 0 0 chr3 36254873 36254899 -123344884 + (CCCCCA)n Simple_repeat Simple_repeat 1 26 0 3 861 429 321 83 36 chr3 36254899 36254959 -123344824 - Kanga2_a DNA Tc2 -612 276 212 3 861 279 283 108 0 chr3 36257770 36257890 -123341893 + L1M5 LINE L1 5577 5709 -464 3 861 1634 38 6 0 chr3 36257937 36258120 -123341663 - B2_Mm1a SINE B2 -8 185 2 3 861 1412 221 25 19 chr3 36258122 36258436 -123341347 - MTE2a LTR MaLR 0 379 64 3 861 395 252 98 0 chr3 36258437 36258560 -123341223 + Lx8 LINE L1 6370 6504 -969 3 861 198 0 0 0 chr3 36259185 36259207 -123340576 + (TA)n Simple_repeat Simple_repeat 2 23 0 3 861 1392 109 130 4 chr3 36259214 36259305 -123340478 - Lx3B LINE L1 0 6973 6853 3 861 225 65 0 0 chr3 36259305 36259336 -123340447 + (CCA)n Simple_repeat Simple_repeat 1 31 0 3 861 1392 109 130 4 chr3 36259336 36259474 -123340309 - Lx3B LINE L1 -121 6852 6715 3 861 294 276 110 13 chr3 36260593 36260747 -123339036 + L1MC1 LINE L1 6045 6213 -120 3 861 292 59 0 38 chr3 36261797 36261850 -123337933 + (TTTA)n Simple_repeat Simple_repeat 1 51 0 3 861 9257 115 25 9 chr3 36261850 36263738 -123336045 - Lx2 LINE L1 -27 6970 5056 3 861 244 324 131 17 chr3 36263825 36264123 -123335660 + L1M5 LINE L1 3714 4045 -2101 3 861 1310 167 4 13 chr3 36264123 36264354 -123335429 - MTB_Mm LTR MaLR 0 407 179 3 861 21 0 0 0 chr3 36264354 36264375 -123335408 + AT_rich Low_complexity Low_complexity 1 21 0 3 861 2217 240 31 19 chr3 36264378 36265216 -123334567 - Lx6 LINE L1 -11 7449 6454 3 861 7875 39 6 1 chr3 36265212 36266158 -123333625 - L1Md_F2 LINE L1 -1 6581 5631 3 861 614 271 0 0 chr3 36266154 36266283 -123333500 - Lx6 LINE L1 -738 6312 6184 3 861 234 111 0 0 chr3 36266296 36266332 -123333451 + tRNA-Glu-GAG tRNA tRNA 2 37 -38 3 861 1018 179 100 0 chr3 36266328 36266518 -123333265 - MTB_Mm LTR MaLR -210 211 3 3 861 336 292 85 63 chr3 36266885 36267393 -123332390 + L1M5 LINE L1 4320 4838 -1308 3 861 7365 75 12 5 chr3 36267684 36268653 -123331130 + L1_Mus3 LINE L1 5653 6628 -10 3 861 234 228 207 17 chr3 36268932 36269048 -123330735 - L1M5 LINE L1 -1946 4200 4063 3 861 308 234 52 0 chr3 36269147 36269224 -123330559 - L1M5 LINE L1 -2204 3942 3862 3 861 1146 157 75 20 chr3 36269889 36270090 -123329693 + B3 SINE B2 2 213 -3 3 861 458 320 0 0 chr3 36270570 36270720 -123329063 + (TG)n Simple_repeat Simple_repeat 1 150 0 3 861 704 200 0 6 chr3 36270735 36270916 -123328867 + (TG)n Simple_repeat Simple_repeat 1 180 0 3 861 2610 179 78 35 chr3 36271686 36272235 -123327548 - Lx5 LINE L1 0 7050 6478 3 861 1548 59 21 5 chr3 36272343 36272531 -123327252 - B2_Mm2 SINE B2 -4 191 1 3 861 284 323 114 80 chr3 36273008 36273183 -123326600 - MLT1D LTR MaLR -309 196 16 3 861 740 277 148 11 chr3 36273231 36273684 -123326099 + L1MC2 LINE L1 5718 6232 -112 3 861 504 322 40 0 chr3 36273865 36274014 -123325769 - RSINE1 SINE B4 0 165 11 3 861 215 135 27 0 chr3 36274974 36275011 -123324772 + (TG)n Simple_repeat Simple_repeat 1 38 0 3 861 207 0 0 0 chr3 36275420 36275443 -123324340 + (CCCCCA)n Simple_repeat Simple_repeat 1 23 0 3 861 385 200 0 26 chr3 36276368 36276445 -123323338 + MT2A LTR ERVL 2 76 -457 3 861 1924 223 30 62 chr3 36276467 36276979 -123322804 - RLTR20A1 LTR ERVK -32 519 23 3 861 1094 60 7 43 chr3 36276979 36277119 -123322664 + B1_Mus1 SINE Alu 1 135 -13 3 861 735 12 0 0 chr3 36277119 36277203 -123322580 + (GAAA)n Simple_repeat Simple_repeat 3 86 0 3 861 1924 223 30 62 chr3 36277203 36277225 -123322558 - RLTR20A1 LTR ERVK -529 22 2 3 861 411 228 0 89 chr3 36277225 36277324 -123322459 + MT2A LTR ERVL 69 158 -375 3 861 341 118 20 0 chr3 36277321 36277372 -123322411 + MT2A LTR ERVL 349 400 -133 3 861 4675 181 56 87 chr3 36277423 36278673 -123321110 + MYSERV6-int LTR ERVK 7744 8955 -4 3 861 1329 207 157 64 chr3 36278682 36278818 -123320965 + RMER4B LTR ERVK 13 157 -428 3 861 486 0 0 0 chr3 36278818 36278872 -123320911 + (TTTTG)n Simple_repeat Simple_repeat 2 55 0 3 861 1329 207 157 64 chr3 36278872 36279251 -123320532 + RMER4B LTR ERVK 158 576 -9 3 861 6738 110 20 9 chr3 36279322 36280333 -123319450 - Lx2 LINE L1 0 6997 5976 3 861 395 227 175 26 chr3 36281445 36281599 -123318184 - L1MEc LINE L1 -3279 3040 2864 4 861 1221 62 0 0 chr3 36281621 36281767 -123318016 + B1_Mm SINE Alu 2 147 0 4 861 35 0 0 0 chr3 36281767 36281802 -123317981 + AT_rich Low_complexity Low_complexity 1 35 0 4 861 204 200 11 23 chr3 36282025 36282112 -123317671 + GA-rich Low_complexity Low_complexity 1 86 0 4 861 244 270 113 51 chr3 36282199 36282394 -123317389 - L1MEc LINE L1 -3932 2468 2262 4 861 245 105 0 0 chr3 36282425 36282463 -123317320 - B2_Mm2 SINE B2 -94 101 64 4 861 905 56 8 0 chr3 36282499 36282624 -123317159 - B2_Mm1t SINE B2 -14 179 54 4 861 460 286 79 0 chr3 36282627 36282767 -123317016 - B3A SINE B2 -47 151 1 4 861 417 305 152 16 chr3 36282819 36283145 -123316638 - L1MEc LINE L1 -4179 2221 1880 4 861 575 254 159 80 chr3 36283145 36283496 -123316287 - MTE2a LTR MaLR 0 379 1 4 861 417 305 152 16 chr3 36283496 36283682 -123316101 - L1MEc LINE L1 -4521 1879 1639 4 861 1154 28 35 0 chr3 36283684 36283825 -123315958 - B1_Mm SINE Alu 0 147 2 4 861 240 291 100 13 chr3 36284130 36284280 -123315503 - L1MEc LINE L1 -6179 221 59 4 861 1874 169 67 20 chr3 36284692 36285049 -123314734 - ORR1D1 LTR MaLR 0 374 1 4 861 284 280 39 88 chr3 36285051 36285153 -123314630 + PB1D7 SINE Alu 24 120 0 4 861 2162 133 9 3 chr3 36285263 36285587 -123314196 - ORR1A3 LTR MaLR 0 326 1 4 861 942 281 80 56 chr3 36286149 36287002 -123312781 - L1MD2 LINE L1 -401 5958 5079 4 861 418 393 54 19 chr3 36287594 36288183 -123311600 - L1M5 LINE L1 -1990 4156 3547 4 861 2885 49 0 26 chr3 36289001 36289378 -123310405 - L1Md_F2 LINE L1 0 6582 6216 4 861 250 303 15 0 chr3 36289411 36289477 -123310306 - ID4 SINE ID -4 79 13 4 861 1153 55 0 27 chr3 36289607 36289757 -123310026 + B1_Mm SINE Alu 2 147 0 4 861 207 0 0 0 chr3 36289757 36289780 -123310003 + (A)n Simple_repeat Simple_repeat 1 23 0 4 861 232 279 11 55 chr3 36289869 36289960 -123309823 - RMER4A LTR ERVK -358 108 22 4 861 425 250 15 23 chr3 36291029 36291160 -123308623 + MLT1A0 LTR MaLR 199 340 -50 4 861 855 115 8 0 chr3 36291338 36291468 -123308315 + B2_Mm1a SINE B2 2 132 -61 4 861 295 113 455 20 chr3 36291481 36291580 -123308203 + B2_Mm2 SINE B2 47 188 -7 4 861 1625 225 14 11 chr3 36291638 36292007 -123307776 - ORR1D2 LTR MaLR 0 370 1 4 861 633 281 0 7 chr3 36292415 36292555 -123307228 + RSINE1 SINE B4 3 141 -24 4 861 351 0 0 0 chr3 36292555 36292594 -123307189 + (CA)n Simple_repeat Simple_repeat 1 39 0 4 861 21 0 0 0 chr3 36292606 36292627 -123307156 + AT_rich Low_complexity Low_complexity 1 21 0 4 861 557 224 8 160 chr3 36292653 36292903 -123306880 + B3 SINE B2 5 216 0 4 861 452 228 11 0 chr3 36292938 36293030 -123306753 + PB1D9 SINE Alu 2 94 -26 4 861 310 305 33 78 chr3 36293368 36293521 -123306262 - MLT2D LTR ERVL -106 358 213 4 861 589 194 17 96 chr3 36294161 36294338 -123305445 - MLT2D LTR ERVL -251 163 1 4 861 2161 203 61 16 chr3 36295124 36295634 -123304149 + Lx7 LINE L1 6820 7352 -344 4 861 228 100 0 0 chr3 36295637 36295677 -123304106 + (CAAA)n Simple_repeat Simple_repeat 2 41 0 4 861 280 247 11 11 chr3 36295817 36295911 -123303872 + Lx7 LINE L1 7587 7680 -16 4 861 1163 68 0 0 chr3 36295916 36296062 -123303721 + B1_Mus2 SINE Alu 2 147 0 4 861 330 115 0 0 chr3 36296062 36296114 -123303669 + (A)n Simple_repeat Simple_repeat 1 52 0 4 861 393 285 84 2 chr3 36296531 36296705 -123303078 - L1MA7 LINE L1 -51 6249 6053 4 861 839 279 124 16 chr3 36296713 36297164 -123302619 - L1MA7 LINE L1 -353 5938 5439 4 861 2212 197 62 38 chr3 36297167 36297695 -123302088 - RLTR20A LTR ERVK 0 541 1 4 861 313 209 122 38 chr3 36297695 36297871 -123301912 - L1M4 LINE L1 -730 5441 5239 4 861 414 216 47 31 chr3 36298078 36298207 -123301576 + L1M4 LINE L1 5343 5473 -705 4 861 929 179 12 19 chr3 36298208 36298774 -123301009 + GA-rich Low_complexity Low_complexity 1 561 0 4 861 457 200 22 28 chr3 36298785 36298907 -123300876 + GA-rich Low_complexity Low_complexity 2 126 0 4 861 1090 108 17 0 chr3 36298907 36299083 -123300700 + (GAAA)n Simple_repeat Simple_repeat 1 179 0 4 861 457 200 22 28 chr3 36299083 36299140 -123300643 + polypurine Low_complexity Low_complexity 127 180 0 4 861 371 248 25 39 chr3 36299146 36299282 -123300501 + L1M4 LINE L1 5499 5632 -542 4 861 954 156 12 0 chr3 36299398 36299565 -123300218 - URR1A DNA MER1_type 0 226 58 4 861 477 266 140 49 chr3 36300214 36300479 -123299304 - RLTR40 LTR ERVK -13 804 516 4 861 412 271 84 47 chr3 36300681 36300871 -123298912 - RLTR41 LTR ERV1 0 446 250 4 861 654 302 53 37 chr3 36301286 36301527 -123298256 - MER88 LTR ERVL 0 464 220 4 861 366 77 19 0 chr3 36301527 36301579 -123298204 + RMER20A LTR ERVK 1 53 -463 4 861 520 241 17 25 chr3 36301581 36301700 -123298083 + MERVK26-int LTR ERVK 6800 6917 -2 4 861 2668 171 7 56 chr3 36301705 36302243 -123297540 + RMER20A LTR ERVK 3 514 -2 4 861 491 290 74 6 chr3 36302269 36302432 -123297351 - MER88 LTR ERVL -290 174 1 4 861 2573 136 44 66 chr3 36302442 36302898 -123296885 + RLTR41 LTR ERV1 1 446 0 4 861 941 281 123 15 chr3 36303286 36303766 -123296017 - ERVL-E-int LTR ERVL -1586 4081 3550 4 861 2219 131 27 3 chr3 36304368 36304737 -123295046 + RMER20A LTR ERVK 1 378 -138 4 861 435 171 0 0 chr3 36304755 36304825 -123294958 + RMER20A LTR ERVK 447 516 0 4 861 303 311 77 86 chr3 36305938 36306251 -123293532 - ORR1D2 LTR MaLR -54 316 7 4 861 277 261 271 48 chr3 36306344 36306658 -123293125 - Tigger9b DNA MER2_type -178 446 63 4 107 396 241 146 6 chr3 36306798 36306969 -123292814 + L1MA7 LINE L1 6087 6281 -10 4 862 419 212 67 134 chr3 36307890 36307991 -123291792 + B3A SINE B2 64 159 -34 4 862 234 0 0 0 chr3 36307991 36308017 -123291766 + (CA)n Simple_repeat Simple_repeat 2 27 0 4 862 247 211 68 136 chr3 36308017 36308049 -123291734 + B2_Mm1t SINE B2 160 189 -4 4 862 344 279 114 26 chr3 36308612 36308726 -123291057 - B1F SINE Alu -8 141 18 4 862 5523 157 26 6 chr3 36308982 36309875 -123289908 - Lx5 LINE L1 -3 7047 6137 4 862 4002 64 0 0 chr3 36310114 36310601 -123289182 - L1_Mus1 LINE L1 0 6567 6081 4 862 3673 68 6 2 chr3 36310618 36311143 -123288640 + L1_Mus1 LINE L1 5533 6059 -508 4 862 1874 196 17 7 chr3 36312977 36313383 -123286400 + L1VL4 LINE L1 521 930 -5372 4 862 2170 104 3 3 chr3 36313383 36313701 -123286082 + ORR1A2 LTR MaLR 1 318 -9 4 862 2655 147 6 72 chr3 36313706 36313943 -123285840 + ORR1A2-int LTR MaLR 1 208 -1755 4 862 426 20 0 0 chr3 36313943 36313994 -123285789 + (TTTG)n Simple_repeat Simple_repeat 2 52 0 4 862 1164 43 0 0 chr3 36313994 36314132 -123285651 - B1_Mm SINE Alu -9 138 1 4 862 2655 147 6 72 chr3 36314132 36314435 -123285348 + ORR1A2-int LTR MaLR 209 505 -1458 4 862 2355 64 51 0 chr3 36314435 36314746 -123285037 + IAPLTR2b LTR ERVK 1 327 0 4 862 18699 70 65 62 chr3 36314747 36317504 -123282279 + IAPEz-int LTR ERVK 9 2774 -3707 4 862 3171 19 0 0 chr3 36317502 36317862 -123281921 + IAPEz-int LTR ERVK 4001 4360 -2121 4 862 5617 56 14 13 chr3 36317862 36318568 -123281215 + IAPEz-int LTR ERVK 5775 6481 0 4 862 2333 68 51 0 chr3 36318568 36318879 -123280904 + IAPLTR2b LTR ERVK 1 327 0 4 862 271 267 0 0 chr3 36318880 36318940 -123280843 + ORR1A2-int LTR MaLR 535 594 -915 4 862 433 245 66 137 chr3 36318893 36318934 -123280849 + RLTR25A LTR ERVK 460 525 -578 4 862 586 170 0 0 chr3 36318934 36319034 -123280749 + MT2B LTR ERVL 157 256 -345 4 862 433 245 66 137 chr3 36319034 36319120 -123280663 + RLTR25A LTR ERVK 526 670 -433 4 862 4782 131 6 16 chr3 36319040 36320501 -123279282 + ORR1A2-int LTR MaLR 718 1963 0 4 862 237 75 37 19 chr3 36321080 36321134 -123278649 + (CAAAA)n Simple_repeat Simple_repeat 2 56 0 4 862 2743 121 45 7 chr3 36321140 36321581 -123278202 + L1_Mur1 LINE L1 4744 5201 -685 4 862 3800 157 14 35 chr3 36321581 36322241 -123277542 + Lx3C LINE L1 6327 6972 -4 4 862 225 0 0 0 chr3 36322361 36322386 -123277397 + (TA)n Simple_repeat Simple_repeat 1 25 0 4 862 594 264 122 45 chr3 36322507 36322729 -123277054 - MTE2a LTR MaLR -8 371 133 4 862 180 0 0 0 chr3 36323383 36323403 -123276380 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 4 862 1097 168 4 36 chr3 36323518 36323762 -123276021 - RMER10A LTR ERVL -177 221 1 4 862 703 323 61 27 chr3 36324281 36324609 -123275174 - LTR40c LTR ERVL -29 436 98 4 862 1689 227 101 22 chr3 36324925 36325421 -123274362 - RMER15 LTR ERVL -19 556 22 4 862 274 235 15 0 chr3 36325444 36325512 -123274271 - RMER15 LTR ERVL -506 69 1 4 862 369 266 194 17 chr3 36327149 36327329 -123272454 + RMER15 LTR ERVL 294 505 -70 4 862 1610 163 11 23 chr3 36327588 36327917 -123271866 - ORR1B2 LTR MaLR 0 384 69 4 862 1140 51 0 0 chr3 36327917 36328055 -123271728 + B1_Mus1 SINE Alu 2 139 -9 4 862 1382 201 20 77 chr3 36328055 36328075 -123271708 - ORR1B2 LTR MaLR -316 68 52 4 862 408 40 0 0 chr3 36328075 36328125 -123271658 + (TA)n Simple_repeat Simple_repeat 2 51 0 4 862 1382 201 20 77 chr3 36328125 36328150 -123271633 - ORR1B2 LTR MaLR -333 51 29 4 862 393 39 0 0 chr3 36328150 36328201 -123271582 + (TG)n Simple_repeat Simple_repeat 1 51 0 4 862 414 0 0 0 chr3 36328201 36328246 -123271537 + (GA)n Simple_repeat Simple_repeat 1 46 0 4 862 213 39 0 0 chr3 36328247 36328273 -123271510 + (TG)n Simple_repeat Simple_repeat 1 26 0 4 862 1382 201 20 77 chr3 36328273 36328297 -123271486 - ORR1B2 LTR MaLR -356 28 6 4 862 792 276 75 38 chr3 36328409 36328676 -123271107 - ORR1D2 LTR MaLR 0 370 94 4 862 2180 105 38 189 chr3 36328730 36329237 -123270546 - RLTR23 LTR ERV1 0 430 1 4 862 494 220 57 41 chr3 36329314 36329437 -123270346 + RMER20B LTR ERVK 1 125 -502 4 862 282 284 209 23 chr3 36329576 36329861 -123269922 + RMER20B LTR ERVK 126 472 -44 4 862 598 179 103 0 chr3 36329917 36330034 -123269749 + B1_Mur4 SINE Alu 22 150 0 4 862 746 63 56 12 chr3 36330809 36330970 -123268813 + (TAGA)n Simple_repeat Simple_repeat 2 169 0 4 862 239 289 113 38 chr3 36331177 36331310 -123268473 - L1ME4a LINE L1 -44 6196 6054 4 862 1596 261 105 29 chr3 36331427 36331904 -123267879 + Lx6 LINE L1 6947 7459 -1 4 862 331 316 105 44 chr3 36332098 36332306 -123267477 - L1ME4a LINE L1 -262 5862 5650 4 862 5090 110 12 65 chr3 36332306 36333154 -123266629 + RLTR13B4 LTR ERVK 1 803 0 4 862 331 316 105 44 chr3 36333154 36333240 -123266543 - L1ME4a LINE L1 -475 5649 5550 4 862 3935 58 22 2 chr3 36333742 36334240 -123265543 - L1_Mus1 LINE L1 -246 6321 5814 4 862 972 69 0 0 chr3 36334240 36334371 -123265412 + L1_Mus1 LINE L1 6437 6567 0 4 862 409 243 19 0 chr3 36334786 36334889 -123264894 - B1_Mus2 SINE Alu -37 110 6 4 862 204 333 137 12 chr3 36335496 36335657 -123264126 - MIRb SINE MIR -79 189 9 4 862 915 287 24 38 chr3 36336481 36336771 -123263012 - B4 SINE B4 -2 290 5 4 862 278 143 16 0 chr3 36336904 36336967 -123262816 + CT-rich Low_complexity Low_complexity 1 64 0 4 862 3124 139 15 46 chr3 36337599 36338143 -123261640 + RLTR12B LTR ERVK 1 527 -1 4 862 35 41 0 0 chr3 36338604 36338653 -123261130 + AT_rich Low_complexity Low_complexity 1 49 0 4 862 354 325 94 50 chr3 36338889 36339090 -123260693 - MLT1A0 LTR MaLR -65 300 91 4 862 2518 145 13 0 chr3 36339786 36340172 -123259611 + ORR1B1 LTR MaLR 1 391 -3 4 862 539 211 7 111 chr3 36340885 36341029 -123258754 + B4 SINE B4 146 274 -18 4 862 222 37 0 0 chr3 36341034 36341061 -123258722 + (CA)n Simple_repeat Simple_repeat 2 28 0 4 862 390 279 45 0 chr3 36341082 36341193 -123258590 + PB1D10 SINE Alu 1 116 -1 4 862 245 89 22 0 chr3 36341572 36341617 -123258166 + (CA)n Simple_repeat Simple_repeat 1 46 0 5 862 190 152 34 0 chr3 36341714 36341773 -123258010 + (CA)n Simple_repeat Simple_repeat 2 62 0 5 862 204 40 0 0 chr3 36341790 36341815 -123257968 + (TC)n Simple_repeat Simple_repeat 1 25 0 5 862 180 0 0 0 chr3 36341815 36341834 -123257949 + (CA)n Simple_repeat Simple_repeat 1 20 0 5 862 360 43 0 0 chr3 36341834 36341879 -123257904 + (GA)n Simple_repeat Simple_repeat 2 47 0 5 862 646 312 86 59 chr3 36342195 36342635 -123257148 + MLT1D LTR MaLR 22 473 -32 5 862 304 321 9 27 chr3 36342814 36342926 -123256857 + Lx8 LINE L1 7213 7322 -151 5 862 219 154 0 0 chr3 36343055 36343094 -123256689 + (TA)n Simple_repeat Simple_repeat 2 40 0 5 862 487 192 33 8 chr3 36343099 36343220 -123256563 + RLTR15 LTR ERVK 1 124 -235 5 862 299 272 50 35 chr3 36343306 36343447 -123256336 + ORR1E LTR MaLR 50 192 -167 5 862 244 113 0 54 chr3 36344290 36344346 -123255437 + (CATATA)n Simple_repeat Simple_repeat 5 57 0 5 862 211 211 0 0 chr3 36344368 36344420 -123255363 + T-rich Low_complexity Low_complexity 1 52 0 5 862 746 85 0 0 chr3 36344420 36344526 -123255257 - B1_Mus2 SINE Alu 0 147 42 5 862 1091 159 0 11 chr3 36344526 36344704 -123255079 + (TCTCTG)n Simple_repeat Simple_repeat 1 176 0 5 862 366 117 0 32 chr3 36344706 36344768 -123255015 - B1_Mus1 SINE Alu -88 60 1 5 862 1395 50 44 6 chr3 36344775 36344956 -123254827 - B2_Mm2 SINE B2 -7 188 1 5 862 295 248 36 13 chr3 36345829 36345913 -123253870 - PB1D7 SINE Alu -25 95 11 5 862 396 59 0 0 chr3 36346413 36346464 -123253319 + (GGGA)n Simple_repeat Simple_repeat 3 53 0 5 862 412 155 60 52 chr3 36346680 36346796 -123252987 - PB1D10 SINE Alu 0 117 1 5 862 450 0 0 0 chr3 36346876 36346926 -123252857 + (TG)n Simple_repeat Simple_repeat 2 51 0 5 862 576 132 0 0 chr3 36347195 36347286 -123252497 + RLTR15 LTR ERVK 154 244 -115 5 862 297 0 0 0 chr3 36347557 36347590 -123252193 + (CA)n Simple_repeat Simple_repeat 2 34 0 5 862 188 138 30 30 chr3 36347602 36347669 -123252114 + C-rich Low_complexity Low_complexity 2 68 0 5 862 303 71 0 0 chr3 36354752 36354794 -123244989 + (CAGG)n Simple_repeat Simple_repeat 2 43 0 5 862 189 0 0 0 chr3 36356186 36356207 -123243576 + (TGAA)n Simple_repeat Simple_repeat 3 23 0 5 862 917 268 98 51 chr3 36357706 36358174 -123241609 - L1MA9 LINE L1 -82 6230 5741 5 862 396 0 0 0 chr3 36358827 36358871 -123240912 + (CA)n Simple_repeat Simple_repeat 1 44 0 5 862 279 245 0 0 chr3 36361175 36361228 -123238555 + B1F SINE Alu 6 58 -91 5 862 236 259 0 12 chr3 36361373 36361455 -123238328 + CT-rich Low_complexity Low_complexity 5 85 0 5 862 803 196 7 26 chr3 36361459 36361611 -123238172 - B1_Mur2 SINE Alu 0 149 1 5 862 195 42 0 0 chr3 36361724 36361748 -123238035 + (CCCA)n Simple_repeat Simple_repeat 1 24 0 5 862 714 151 32 12 chr3 36363126 36363385 -123236398 + (TA)n Simple_repeat Simple_repeat 1 264 0 5 862 189 154 0 0 chr3 36364919 36364958 -123234825 + (CA)n Simple_repeat Simple_repeat 2 40 0 5 862 2700 148 14 0 chr3 36365833 36366246 -123233537 - MTC LTR MaLR 0 421 3 5 862 511 170 0 41 chr3 36367207 36367305 -123232478 + B1_Mur4 SINE Alu 43 136 -14 5 862 1056 102 11 17 chr3 36367305 36367484 -123232299 + (GAAA)n Simple_repeat Simple_repeat 2 179 0 5 862 1169 28 0 40 chr3 36367490 36367638 -123232145 + B1_Mus1 SINE Alu 1 142 -6 5 862 1012 19 19 31 chr3 36367640 36367800 -123231983 + (GAGAA)n Simple_repeat Simple_repeat 5 162 0 5 862 2064 149 13 26 chr3 36367985 36368365 -123231418 + MTB_Mm LTR MaLR 33 407 0 5 862 358 262 39 39 chr3 36368383 36368510 -123231273 + PB1 SINE Alu 1 127 0 5 862 280 257 29 0 chr3 36368518 36368588 -123231195 + ID4 SINE ID 3 74 -9 5 862 741 214 88 36 chr3 36369128 36369322 -123230461 - B3 SINE B2 -12 204 1 5 862 417 273 12 42 chr3 36369331 36369479 -123230304 - B3A SINE B2 0 216 70 5 862 365 276 31 0 chr3 36369665 36369763 -123230020 + PB1D7 SINE Alu 7 107 -13 5 862 207 0 0 0 chr3 36369764 36369787 -123229996 + (TAA)n Simple_repeat Simple_repeat 2 24 0 5 862 735 151 135 0 chr3 36371277 36371403 -123228380 + B1_Mur4 SINE Alu 1 143 -7 5 862 180 125 0 0 chr3 36371415 36371447 -123228336 + (A)n Simple_repeat Simple_repeat 1 32 0 5 862 866 132 0 22 chr3 36371571 36371710 -123228073 - B1_Mur3 SINE Alu -5 144 9 5 862 657 206 8 8 chr3 36372139 36372271 -123227512 + ID_B1 SINE B4 85 216 -8 5 862 248 250 48 143 chr3 36372519 36372645 -123227138 + PB1D10 SINE Alu 4 117 0 5 862 1097 128 0 6 chr3 36373053 36373234 -123226549 + (GGGA)n Simple_repeat Simple_repeat 1 180 0 5 862 417 20 0 0 chr3 36373252 36373302 -123226481 + (TG)n Simple_repeat Simple_repeat 2 51 0 5 862 323 211 26 13 chr3 36373460 36373537 -123226246 - ID_B1 SINE B4 -60 164 87 5 862 402 176 120 11 chr3 36373603 36373695 -123226088 + PB1D9 SINE Alu 2 103 -17 5 862 216 0 0 0 chr3 36373702 36373726 -123226057 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 5 862 25 0 0 0 chr3 36375179 36375204 -123224579 + GC_rich Low_complexity Low_complexity 1 25 0 5 862 207 0 0 0 chr3 36375528 36375551 -123224232 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 5 862 752 286 77 10 chr3 36376181 36376478 -123223305 - MLT1A0 LTR MaLR -26 339 23 5 862 325 304 14 18 chr3 36376745 36376890 -123222893 + B1F SINE Alu 1 141 -8 5 862 299 276 0 0 chr3 36376903 36376979 -123222804 + ID4 SINE ID 7 82 -1 5 862 389 258 53 11 chr3 36377279 36377373 -123222410 - ORR1E LTR MaLR -258 101 4 5 862 740 327 142 14 chr3 36378098 36378529 -123221254 + MLT2B1 LTR ERVL 14 499 -21 5 862 450 315 67 141 chr3 36378586 36378792 -123220991 - MER21B LTR ERV1 -82 781 600 5 862 802 239 65 20 chr3 36378792 36378993 -123220790 - B3 SINE B2 -6 210 1 5 862 450 315 67 141 chr3 36378993 36379189 -123220594 - MER21B LTR ERV1 -264 599 409 5 862 468 0 0 0 chr3 36379421 36379473 -123220310 + (CCA)n Simple_repeat Simple_repeat 2 53 0 5 862 226 281 33 22 chr3 36379496 36379587 -123220196 + MLT1F2 LTR MaLR 398 489 -71 5 862 189 226 0 0 chr3 36380218 36380271 -123219512 + GA-rich Low_complexity Low_complexity 4 56 0 5 862 463 177 54 39 chr3 36381547 36381676 -123218107 - RSINE1 SINE B4 -34 131 1 5 862 251 308 24 24 chr3 36382270 36382393 -123217390 - HAL1 LINE L1 -746 1761 1639 5 862 246 298 143 0 chr3 36382972 36383056 -123216727 + PB1D10 SINE Alu 10 105 -12 5 862 207 69 0 0 chr3 36383056 36383085 -123216698 + (CAAA)n Simple_repeat Simple_repeat 1 29 0 5 862 657 193 35 56 chr3 36384352 36384495 -123215288 - B1F1 SINE Alu -8 141 2 5 862 635 230 53 20 chr3 36384568 36384719 -123215064 + RSINE1 SINE B4 4 159 -6 5 862 230 89 44 0 chr3 36384729 36384774 -123215009 + (CAGA)n Simple_repeat Simple_repeat 2 48 0 5 862 370 240 70 0 chr3 36384984 36385084 -123214699 - PB1D10 SINE Alu -6 111 5 5 862 258 239 209 0 chr3 36385472 36385539 -123214244 + L1MCa LINE L1 367 447 -5788 5 862 2174 227 23 94 chr3 36385556 36386202 -123213581 - RMER19C LTR ERVK -11 600 1 5 862 244 305 132 9 chr3 36386611 36386717 -123213066 + L1MC1 LINE L1 6187 6305 -28 5 862 2173 166 5 11 chr3 36386720 36387097 -123212686 - RLTR14 LTR ERV1 0 382 8 5 862 1122 95 0 0 chr3 36387143 36387291 -123212492 + B1_Mus1 SINE Alu 1 148 0 5 862 306 301 68 0 chr3 36387309 36387442 -123212341 + L1MCa LINE L1 2057 2198 -5226 5 862 1097 173 14 29 chr3 36387822 36388139 -123211644 - RLTR33 LTR ERVK -130 548 197 5 862 538 277 239 44 chr3 36388172 36388603 -123211180 + MT2A LTR ERVL 19 533 0 5 862 835 143 23 0 chr3 36388640 36388773 -123211010 + B1_Mur4 SINE Alu 1 136 -14 5 862 410 331 52 13 chr3 36388863 36389016 -123210767 - MIR SINE MIR -71 191 33 5 862 1813 167 59 72 chr3 36390777 36391164 -123208619 - ORR1C2 LTR MaLR 0 384 3 5 862 519 225 61 34 chr3 36393171 36393297 -123206486 - Lx6 LINE L1 -1390 6070 5945 5 862 441 0 0 0 chr3 36393297 36393346 -123206437 + (TG)n Simple_repeat Simple_repeat 2 50 0 5 862 519 225 61 34 chr3 36393346 36393366 -123206417 - Lx6 LINE L1 -1516 5944 5920 5 862 960 285 38 22 chr3 36393354 36393670 -123206113 + Lx6 LINE L1 7132 7452 -8 5 862 229 253 60 0 chr3 36393854 36393937 -123205846 + L5 LINE RTE 1409 1496 -769 5 862 486 248 140 98 chr3 36394710 36394996 -123204787 + RMER10A LTR ERVL 1 298 -144 5 862 540 0 0 0 chr3 36394996 36395056 -123204727 + (TTC)n Simple_repeat Simple_repeat 1 60 0 5 862 330 228 72 20 chr3 36395056 36395208 -123204575 + RMER10A LTR ERVL 257 416 -26 5 862 411 21 0 0 chr3 36395999 36396047 -123203736 + (CA)n Simple_repeat Simple_repeat 2 49 0 5 862 625 208 8 0 chr3 36396235 36396360 -123203423 + B1_Mus1 SINE Alu 1 126 -22 5 862 642 325 65 29 chr3 36396382 36396661 -123203122 + B4A SINE B4 2 290 -2 5 862 316 250 38 0 chr3 36397186 36397266 -123202517 + ID_B1 SINE B4 142 224 0 5 862 194 0 39 0 chr3 36397422 36397448 -123202335 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 5 862 1005 136 0 0 chr3 36397513 36397660 -123202123 + B1_Mur4 SINE Alu 1 147 -3 5 862 235 292 140 40 chr3 36398122 36398222 -123201561 + RSINE1 SINE B4 56 165 0 5 862 341 169 12 0 chr3 36398229 36398312 -123201471 + (CA)n Simple_repeat Simple_repeat 2 85 0 5 862 218 208 0 111 chr3 36398337 36398391 -123201392 + ID4_ SINE ID 5 52 -31 5 862 593 262 139 48 chr3 36398930 36399239 -123200544 + MTD LTR MaLR 83 419 0 6 862 237 242 30 15 chr3 36399515 36399582 -123200201 + ID_B1 SINE B4 91 158 -66 6 862 775 237 6 0 chr3 36399583 36399739 -123200044 + B3A SINE B2 1 157 -41 6 862 547 240 60 33 chr3 36399718 36399869 -123199914 + ID_B1 SINE B4 63 217 -7 6 862 440 215 21 0 chr3 36401072 36401165 -123198618 - B4A SINE B4 -196 96 2 6 862 214 50 0 48 chr3 36401387 36401429 -123198354 + (TTTTA)n Simple_repeat Simple_repeat 1 40 0 6 862 750 39 0 9 chr3 36401431 36401536 -123198247 - B1_Mus2 SINE Alu 0 147 44 6 862 964 214 15 0 chr3 36401875 36402071 -123197712 - B3 SINE B2 -7 209 11 6 862 249 57 0 0 chr3 36402321 36402356 -123197427 + (TTTG)n Simple_repeat Simple_repeat 1 35 0 6 862 336 337 11 11 chr3 36402613 36402790 -123196993 + (CA)n Simple_repeat Simple_repeat 1 177 0 6 862 180 111 0 0 chr3 36402824 36402851 -123196932 + (CA)n Simple_repeat Simple_repeat 1 27 0 6 862 1176 42 0 0 chr3 36403672 36403814 -123195969 + B1_Mm SINE Alu 1 142 -5 6 862 261 83 0 0 chr3 36403933 36403969 -123195814 + (T)n Simple_repeat Simple_repeat 1 36 0 6 862 502 124 52 0 chr3 36403969 36404063 -123195720 - B1_Mm SINE Alu 0 147 1 6 862 781 276 31 89 chr3 36404103 36404362 -123195421 + B4 SINE B4 49 292 0 6 862 426 204 0 0 chr3 36404362 36404470 -123195313 + (CA)n Simple_repeat Simple_repeat 1 108 0 6 862 206 288 17 0 chr3 36404484 36404543 -123195240 + L2a LINE L2 3346 3405 -21 6 862 269 345 0 8 chr3 36405242 36405359 -123194424 + GA-rich Low_complexity Low_complexity 1 116 0 6 862 3370 49 5 0 chr3 36405531 36405936 -123193847 - MTB_Mm LTR MaLR 0 407 1 6 862 198 0 0 0 chr3 36406084 36406106 -123193677 + (A)n Simple_repeat Simple_repeat 1 22 0 6 862 436 250 8 98 chr3 36406280 36406413 -123193370 + ID_B1 SINE B4 78 198 -26 6 862 784 210 189 22 chr3 36406497 36406682 -123193101 - B3 SINE B2 0 216 1 6 862 242 132 0 0 chr3 36406796 36406834 -123192949 + L1MC2 LINE L1 4975 5012 -1134 6 862 2152 92 108 137 chr3 36406987 36407088 -123192695 + MT2C_Mm LTR ERVL 1 73 -402 6 862 2690 141 32 47 chr3 36407088 36407166 -123192617 - Lx LINE L1 -2 6652 6580 6 862 3562 18 2 0 chr3 36407166 36407561 -123192222 + MTA_Mm LTR MaLR 1 396 0 6 862 9359 34 4 1 chr3 36407561 36408656 -123191127 + MTA_Mm-int LTR MaLR 1 1098 0 6 862 3562 18 2 0 chr3 36408656 36409051 -123190732 + MTA_Mm LTR MaLR 1 396 0 6 862 2690 141 32 47 chr3 36409051 36409497 -123190286 - Lx LINE L1 -75 6579 6136 6 862 2152 92 108 137 chr3 36409497 36409884 -123189899 + MT2C_Mm LTR ERVL 74 475 0 6 862 747 127 0 0 chr3 36410089 36410207 -123189576 + (GGGA)n Simple_repeat Simple_repeat 4 121 0 6 862 1005 289 107 34 chr3 36410258 36410644 -123189139 + L1MC2 LINE L1 5075 5485 -2300 6 862 838 197 0 0 chr3 36410644 36410791 -123188992 + RSINE1 SINE B4 2 148 -17 6 862 1166 276 91 18 chr3 36410791 36411415 -123188368 + L1MC2 LINE L1 5486 6171 -173 6 862 1214 84 67 0 chr3 36411489 36411667 -123188116 + B2_Mm2 SINE B2 2 191 -4 6 862 186 43 0 0 chr3 36411668 36411691 -123188092 + (TTTA)n Simple_repeat Simple_repeat 3 25 0 6 862 1116 102 0 0 chr3 36411691 36411848 -123187935 - B2_Mm2 SINE B2 -38 157 1 6 862 286 257 76 50 chr3 36411883 36412002 -123187781 + L1MC2 LINE L1 6193 6314 -30 6 862 923 160 0 0 chr3 36412036 36412180 -123187603 + B1_Mur4 SINE Alu 1 144 -6 6 862 540 0 0 0 chr3 36412183 36412243 -123187540 + (TAGA)n Simple_repeat Simple_repeat 3 62 0 6 862 184 307 139 0 chr3 36412448 36412549 -123187234 + L2a LINE L2 3312 3426 0 6 862 348 218 123 114 chr3 36412720 36412834 -123186949 + PB1D7 SINE Alu 2 116 -4 6 862 343 256 77 81 chr3 36413912 36414133 -123185650 + L1M5 LINE L1 4943 5162 -984 6 862 22 0 0 0 chr3 36414306 36414328 -123185455 + AT_rich Low_complexity Low_complexity 1 22 0 6 862 1022 96 0 58 chr3 36414373 36414528 -123185255 + B1_Mus2 SINE Alu 1 146 -1 6 862 360 0 0 0 chr3 36415051 36415091 -123184692 + (CA)n Simple_repeat Simple_repeat 2 41 0 6 862 671 204 149 0 chr3 36415101 36415282 -123184501 - MER3 DNA MER1_type -1 208 1 6 862 1213 35 0 0 chr3 36416998 36417143 -123182640 + B1_Mm SINE Alu 1 145 -2 6 862 396 0 0 0 chr3 36417143 36417187 -123182596 + (TAA)n Simple_repeat Simple_repeat 2 45 0 6 862 23 0 0 0 chr3 36417288 36417311 -123182472 + AT_rich Low_complexity Low_complexity 1 23 0 6 862 251 217 15 0 chr3 36417410 36417476 -123182307 + B1F SINE Alu 41 138 -11 6 862 349 324 96 0 chr3 36417604 36417740 -123182043 + B1F2 SINE Alu 1 149 0 6 862 425 99 12 0 chr3 36418787 36418868 -123180915 + (TC)n Simple_repeat Simple_repeat 1 82 0 6 862 423 0 0 0 chr3 36418868 36418915 -123180868 + (TG)n Simple_repeat Simple_repeat 2 48 0 6 862 205 238 0 0 chr3 36420235 36420277 -123179506 + GA-rich Low_complexity Low_complexity 2 43 0 6 862 832 22 0 56 chr3 36420950 36421093 -123178690 + (GAGAA)n Simple_repeat Simple_repeat 5 139 0 6 862 262 289 34 34 chr3 36421630 36421729 -123178054 - MLT1F LTR MaLR -18 530 432 6 862 410 269 38 9 chr3 36421729 36421834 -123177949 + B1F1 SINE Alu 1 108 -41 6 862 450 0 0 0 chr3 36421871 36421921 -123177862 + (TG)n Simple_repeat Simple_repeat 2 51 0 6 862 281 331 151 27 chr3 36421940 36422272 -123177511 - MLT1F LTR MaLR -174 374 2 6 862 181 150 125 0 chr3 36422463 36422503 -123177280 + MIR SINE MIR 28 72 -136 6 862 521 30 15 0 chr3 36422702 36422769 -123177014 + (TAGA)n Simple_repeat Simple_repeat 4 71 0 6 862 284 217 14 0 chr3 36422782 36422851 -123176932 + CT-rich Low_complexity Low_complexity 2 71 0 6 862 224 217 12 35 chr3 36422851 36422937 -123176846 + (CATATA)n Simple_repeat Simple_repeat 2 85 0 6 862 944 108 0 7 chr3 36423211 36423351 -123176432 - MTC LTR MaLR 0 421 283 6 862 314 0 49 0 chr3 36424029 36424070 -123175713 + (CAAAAA)n Simple_repeat Simple_repeat 3 45 0 6 862 3310 137 21 12 chr3 36424127 36424696 -123175087 - L1_Mur3 LINE L1 -3834 2046 1473 6 862 30 0 0 0 chr3 36424703 36424733 -123175050 + AT_rich Low_complexity Low_complexity 1 30 0 6 862 2500 18 0 0 chr3 36424840 36425120 -123174663 - MERVL-int LTR ERVL -1362 4123 3844 6 862 1077 233 46 77 chr3 36425121 36425741 -123174042 - L1_Mur3 LINE L1 -4394 1486 858 6 862 352 257 0 56 chr3 36425968 36426075 -123173708 - L1_Mur3 LINE L1 -6898 830 730 6 862 27 0 0 0 chr3 36426477 36426504 -123173279 + AT_rich Low_complexity Low_complexity 1 27 0 6 862 223 279 0 0 chr3 36427194 36427255 -123172528 + G-rich Low_complexity Low_complexity 1 61 0 6 862 2092 178 34 32 chr3 36428097 36428509 -123171274 - MTC LTR MaLR -8 413 1 6 862 2816 52 0 14 chr3 36428511 36428862 -123170921 + ORR1A1 LTR MaLR 1 346 0 6 862 191 248 28 9 chr3 36430198 36430304 -123169479 + CT-rich Low_complexity Low_complexity 1 108 0 6 862 396 252 0 0 chr3 36432706 36432813 -123166970 + (TA)n Simple_repeat Simple_repeat 1 107 0 6 862 315 0 0 0 chr3 36432815 36432850 -123166933 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 6 862 296 93 0 0 chr3 36432852 36432895 -123166888 - B1_Mus2 SINE Alu -13 134 92 6 862 538 165 0 10 chr3 36433158 36433256 -123166527 - B1_Mur3 SINE Alu -52 97 1 6 862 406 313 122 18 chr3 36433260 36433481 -123166302 - Lx8 LINE L1 -17 7456 7213 6 862 257 349 22 28 chr3 36433820 36434000 -123165783 + RMER15 LTR ERVL 380 558 -17 6 862 263 268 0 0 chr3 36434002 36434073 -123165710 - Lx8 LINE L1 -321 7152 7082 6 862 1139 65 0 0 chr3 36435443 36435582 -123164201 + B1_Mus1 SINE Alu 1 139 -9 6 862 351 0 0 0 chr3 36435582 36435621 -123164162 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 6 862 306 266 149 0 chr3 36435824 36435918 -123163865 + PB1D7 SINE Alu 1 108 -12 6 862 234 250 0 0 chr3 36437585 36437629 -123162154 + B4 SINE B4 226 269 -23 6 862 285 118 0 0 chr3 36437629 36437680 -123162103 + (CA)n Simple_repeat Simple_repeat 2 52 0 6 863 200 118 0 29 chr3 36438059 36438094 -123161689 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 6 863 210 91 0 0 chr3 36440363 36440396 -123159387 + (TAAA)n Simple_repeat Simple_repeat 4 36 0 6 863 23 78 0 0 chr3 36441001 36441052 -123158731 + AT_rich Low_complexity Low_complexity 1 51 0 6 863 207 267 85 43 chr3 36441218 36441312 -123158471 + MIRb SINE MIR 23 126 -142 6 863 2223 183 2 52 chr3 36441949 36442392 -123157391 - MTC LTR MaLR 0 421 1 6 863 5012 105 14 20 chr3 36442480 36443238 -123156545 - RMER6A LTR ERVK 0 756 3 6 863 1911 113 35 0 chr3 36443469 36443779 -123156004 - ORR1A4 LTR MaLR -8 321 1 6 863 233 312 0 15 chr3 36444304 36444369 -123155414 - MER5A DNA MER1_type -56 133 70 6 863 333 238 35 95 chr3 36444434 36444521 -123155262 + MER53 DNA hAT 2 84 -109 6 863 611 272 141 100 chr3 36444521 36445109 -123154674 - RLTR18 LTR ERVK -4 612 1 6 863 333 238 35 95 chr3 36445109 36445221 -123154562 + MER53 DNA hAT 85 189 -4 6 863 810 302 59 28 chr3 36445283 36445607 -123154176 + MLT1A0 LTR MaLR 32 365 0 6 863 441 338 44 18 chr3 36445764 36445993 -123153790 - MLT1D LTR MaLR -267 238 4 6 863 1803 134 24 200 chr3 36446039 36446505 -123153278 - ORR1C2 LTR MaLR 0 384 1 6 863 1418 89 0 5 chr3 36446529 36446720 -123153063 + B2_Mm2 SINE B2 1 190 -5 6 863 515 265 14 96 chr3 36446809 36446955 -123152828 + B1F SINE Alu 3 136 -13 6 863 288 53 0 0 chr3 36446955 36446993 -123152790 + (CAAAA)n Simple_repeat Simple_repeat 1 38 0 6 863 347 368 57 26 chr3 36447082 36447347 -123152436 + B4 SINE B4 2 274 -18 6 863 233 185 36 36 chr3 36447327 36447383 -123152400 + RSINE1 SINE B4 110 165 0 6 863 1412 40 91 0 chr3 36447730 36447906 -123151877 - B2_Mm1t SINE B2 0 193 2 6 863 607 260 0 22 chr3 36447996 36448147 -123151636 - B1_Mur1 SINE Alu 0 149 5 6 863 2007 175 74 18 chr3 36448401 36448791 -123150992 - MTC LTR MaLR -8 413 2 6 863 219 337 102 0 chr3 36448791 36448889 -123150894 - MIR SINE MIR -154 108 1 6 863 491 250 47 8 chr3 36449329 36449458 -123150325 - RCHARR1 DNA MER1_type -1 973 840 6 863 856 142 35 0 chr3 36449464 36449605 -123150178 - B1_Mur4 SINE Alu -4 146 1 6 863 22 0 0 0 chr3 36449617 36449639 -123150144 + AT_rich Low_complexity Low_complexity 1 22 0 7 863 1188 75 0 0 chr3 36449639 36449786 -123149997 - B1_Mus2 SINE Alu 0 147 1 7 863 486 253 97 16 chr3 36449889 36450074 -123149709 - B3 SINE B2 -15 201 2 7 863 588 171 54 0 chr3 36450076 36450205 -123149578 - RCHARR1 DNA MER1_type -494 480 345 6 863 250 179 132 15 chr3 36450745 36450813 -123148970 + PB1D9 SINE Alu 45 120 0 7 863 218 238 125 16 chr3 36451302 36451366 -123148417 + PB1D9 SINE Alu 45 115 -5 7 863 186 118 0 0 chr3 36452147 36452181 -123147602 + (TTA)n Simple_repeat Simple_repeat 2 35 0 7 863 604 234 91 0 chr3 36453145 36453299 -123146484 + B3 SINE B2 43 210 -6 7 863 359 275 26 60 chr3 36454533 36454649 -123145134 - B1F1 SINE Alu -37 112 1 7 863 690 259 36 12 chr3 36454649 36454724 -123145059 - ID SINE ID -145 79 1 7 863 1221 107 26 16 chr3 36455524 36455714 -123144069 + B2_Mm1a SINE B2 1 192 -1 7 863 1578 212 40 26 chr3 36456016 36456365 -123143418 - Lx5 LINE L1 0 7050 6697 7 863 2125 110 3 0 chr3 36456368 36456686 -123143097 - ORR1A2 LTR MaLR -8 319 1 7 863 10525 129 88 17 chr3 36456686 36458519 -123141264 - ORR1A2-int LTR MaLR 0 1963 1 7 863 1676 112 225 0 chr3 36458519 36458786 -123140997 - ORR1A2 LTR MaLR 0 327 1 7 863 827 236 90 22 chr3 36458786 36459020 -123140763 - Lx5 LINE L1 -348 6702 6470 7 863 1003 188 87 0 chr3 36459146 36459354 -123140429 - URR1A DNA MER1_type 0 226 1 7 863 192 312 31 0 chr3 36459475 36459539 -123140244 - MER5A DNA MER1_type 0 189 124 7 863 484 252 154 25 chr3 36460589 36460829 -123138954 - MTD LTR MaLR -139 280 10 7 863 1597 52 0 0 chr3 36461111 36461304 -123138479 - B2_Mm1a SINE B2 0 193 1 7 863 1129 88 0 0 chr3 36461506 36461653 -123138130 + B1_Mus2 SINE Alu 1 147 0 7 863 254 267 27 0 chr3 36461669 36461744 -123138039 + ID4 SINE ID 7 83 0 7 863 476 128 264 33 chr3 36462444 36462565 -123137218 + B1F2 SINE Alu 1 149 0 7 863 333 287 46 0 chr3 36462723 36462810 -123136973 + B3A SINE B2 99 189 -9 7 863 1141 91 71 38 chr3 36462868 36463051 -123136732 - B2_Mm1t SINE B2 -3 190 2 7 863 273 311 50 57 chr3 36463145 36463285 -123136498 - RSINE1 SINE B4 0 165 27 7 863 310 268 60 12 chr3 36463203 36463286 -123136497 - B3A SINE B2 -87 111 25 7 863 276 292 90 45 chr3 36463299 36463410 -123136373 - B3A SINE B2 -26 172 57 7 863 702 222 108 0 chr3 36467261 36467437 -123132346 + B3 SINE B2 1 195 -21 7 863 399 189 178 9 chr3 36468450 36468557 -123131226 - B1F SINE Alu -6 143 19 7 863 499 249 132 78 chr3 36468671 36468928 -123130855 + B4A SINE B4 3 273 -19 7 863 754 156 8 0 chr3 36469457 36469585 -123130198 + B1_Mus1 SINE Alu 2 130 -18 7 863 251 295 44 18 chr3 36471379 36471493 -123128290 - PB1D9 SINE Alu -2 118 2 7 863 250 242 192 40 chr3 36471686 36471785 -123127998 + PB1D9 SINE Alu 7 120 0 7 863 674 149 74 7 chr3 36471809 36471944 -123127839 + B1_Mur4 SINE Alu 1 144 -6 7 863 180 143 0 0 chr3 36471954 36471996 -123127787 + (A)n Simple_repeat Simple_repeat 1 42 0 7 863 429 269 10 121 chr3 36473067 36473274 -123126509 - MER46C DNA MER2_type -154 184 1 7 863 209 299 93 21 chr3 36473448 36473588 -123126195 + MIRb SINE MIR 44 193 -75 7 863 221 164 55 0 chr3 36474095 36474150 -123125633 + (CAAA)n Simple_repeat Simple_repeat 2 59 0 7 863 1887 295 69 42 chr3 36475407 36476202 -123123581 + L1_Mur3 LINE L1 1526 2338 -3542 7 863 1634 27 11 0 chr3 36476202 36476390 -123123393 + B2_Mm1a SINE B2 2 191 -2 7 863 1887 295 69 42 chr3 36476390 36476701 -123123082 + L1_Mur3 LINE L1 2339 2661 -3219 7 863 351 0 0 0 chr3 36476877 36476916 -123122867 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 7 863 1178 44 0 0 chr3 36476916 36477053 -123122730 - B1_Mus2 SINE Alu -10 137 1 7 863 1406 74 10 10 chr3 36477053 36477244 -123122539 - B2_Mm1t SINE B2 0 193 2 7 863 322 289 96 32 chr3 36477604 36477729 -123122054 - B1F SINE Alu -16 133 1 7 863 316 258 134 0 chr3 36478156 36478253 -123121530 + PB1D10 SINE Alu 1 110 -7 7 863 750 63 131 2 chr3 36478254 36478391 -123121392 + B2_Mm2 SINE B2 42 191 -4 7 863 1270 34 0 0 chr3 36478403 36478550 -123121233 + B1_Mus2 SINE Alu 1 147 0 7 863 22 56 0 0 chr3 36478884 36478920 -123120863 + AT_rich Low_complexity Low_complexity 1 36 0 7 863 720 150 0 58 chr3 36478968 36478983 -123120800 + polypyrimidine Low_complexity Low_complexity 166 180 0 7 863 1510 0 0 22 chr3 36478983 36479167 -123120616 + (TTTCC)n Simple_repeat Simple_repeat 1 180 0 7 863 720 150 0 58 chr3 36479167 36479342 -123120441 + CT-rich Low_complexity Low_complexity 2 165 0 7 863 201 243 0 0 chr3 36479342 36479379 -123120404 + polypyrimidine Low_complexity Low_complexity 1 37 0 7 863 587 178 55 32 chr3 36479383 36479693 -123120090 + CT-rich Low_complexity Low_complexity 1 317 0 7 863 234 150 0 0 chr3 36479689 36479729 -123120054 + (T)n Simple_repeat Simple_repeat 1 40 0 7 863 1256 40 0 0 chr3 36480036 36480184 -123119599 + B1_Mus1 SINE Alu 1 148 0 7 863 237 132 0 0 chr3 36480184 36480222 -123119561 + (A)n Simple_repeat Simple_repeat 1 38 0 7 863 23 68 0 0 chr3 36480237 36480281 -123119502 + AT_rich Low_complexity Low_complexity 1 44 0 7 863 512 205 19 30 chr3 36480299 36480436 -123119347 + Lx7 LINE L1 5751 5889 -1584 7 863 1277 108 11 0 chr3 36480436 36480612 -123119171 + B2_Mm1t SINE B2 2 179 -14 7 863 760 284 43 65 chr3 36480760 36481184 -123118599 + Lx7 LINE L1 7048 7471 -2 7 863 23 78 0 0 chr3 36481201 36481252 -123118531 + AT_rich Low_complexity Low_complexity 1 51 0 7 863 614 273 12 12 chr3 36481269 36481432 -123118351 + RSINE1 SINE B4 3 165 0 7 863 1195 119 11 0 chr3 36482051 36482227 -123117556 + B2_Mm1t SINE B2 2 179 -14 7 863 281 112 365 9 chr3 36482311 36482418 -123117365 + B2_Mm2 SINE B2 47 191 -4 7 863 200 217 0 55 chr3 36482883 36482894 -123116889 + A-rich Low_complexity Low_complexity 3 12 0 7 863 663 167 68 55 chr3 36482894 36483040 -123116743 + B1_Mur2 SINE Alu 1 148 -1 7 863 213 222 0 29 chr3 36483040 36483101 -123116682 + A-rich Low_complexity Low_complexity 1 59 0 7 863 2449 54 27 48 chr3 36483387 36483719 -123116064 + ORR1A2 LTR MaLR 1 325 -2 7 863 4411 103 4 4 chr3 36483756 36484437 -123115346 + ORR1A2-int LTR MaLR 967 1647 -316 7 863 404 133 0 0 chr3 36484439 36484499 -123115284 + ORR1A2 LTR MaLR 259 318 -8 7 863 1772 125 143 15 chr3 36484809 36485151 -123114632 + ORR1B1 LTR MaLR 1 386 -8 7 863 248 268 171 0 chr3 36485324 36485447 -123114336 + MTEa LTR MaLR 209 352 -27 7 863 1119 68 7 20 chr3 36485464 36485613 -123114170 - B1_Mus1 SINE Alu 0 148 2 7 863 258 221 0 34 chr3 36485707 36485793 -123113990 - PB1D7 SINE Alu -6 114 33 7 863 396 59 0 0 chr3 36486016 36486067 -123113716 + (TG)n Simple_repeat Simple_repeat 2 52 0 7 863 757 214 14 7 chr3 36486076 36486222 -123113561 - B1_Mur2 SINE Alu 0 149 3 7 863 337 252 153 82 chr3 36486303 36486414 -123113369 + L1MC5 LINE L1 7564 7682 -279 7 863 3126 14 0 3 chr3 36486414 36486761 -123113022 + ORR1A0 LTR MaLR 1 346 0 7 863 14421 53 6 1 chr3 36486761 36488544 -123111239 + ORR1A0-int LTR MaLR 1 1792 0 7 863 3135 17 0 0 chr3 36488544 36488890 -123110893 + ORR1A0 LTR MaLR 1 346 0 7 863 337 252 153 82 chr3 36488890 36489031 -123110752 + L1MC5 LINE L1 7683 7834 -127 7 863 304 176 182 34 chr3 36489075 36489163 -123110620 + PB1D7 SINE Alu 1 101 -19 7 863 249 146 0 0 chr3 36489440 36489488 -123110295 + (CA)n Simple_repeat Simple_repeat 1 48 0 7 863 224 306 82 0 chr3 36489949 36490034 -123109749 - PB1D7 SINE Alu -19 101 10 7 863 245 246 72 0 chr3 36490035 36490104 -123109679 - ID SINE ID -150 74 1 7 863 239 258 140 0 chr3 36490183 36490213 -123109570 - PB1D10 SINE Alu -11 106 1 7 863 243 159 111 0 chr3 36490213 36490276 -123109507 - ID_B1 SINE B4 -73 151 82 7 863 604 238 28 14 chr3 36490430 36490575 -123109208 + B1_Mur1 SINE Alu 2 148 -1 7 863 410 309 29 0 chr3 36491506 36491642 -123108141 - B1_Mur2 SINE Alu -9 140 1 7 863 382 209 94 9 chr3 36491648 36491754 -123108029 - PB1D10 SINE Alu -1 116 2 7 863 21 57 0 0 chr3 36491791 36491826 -123107957 + AT_rich Low_complexity Low_complexity 1 35 0 7 863 261 177 0 92 chr3 36491968 36492055 -123107728 + (CATG)n Simple_repeat Simple_repeat 1 79 0 7 863 527 198 138 0 chr3 36492059 36492175 -123107608 - B4A SINE B4 -42 250 119 7 863 349 186 0 0 chr3 36492195 36492265 -123107518 - B4A SINE B4 -220 72 3 7 863 239 297 40 0 chr3 36492785 36492859 -123106924 - B1F SINE Alu -71 78 2 7 863 622 138 220 0 chr3 36492879 36492988 -123106795 + B1_Mus2 SINE Alu 2 134 -13 7 863 222 37 0 0 chr3 36492988 36493015 -123106768 + (CAAA)n Simple_repeat Simple_repeat 1 27 0 7 863 618 219 35 7 chr3 36494279 36494425 -123105358 + B3 SINE B2 1 137 -58 7 863 2275 126 47 49 chr3 36494473 36494642 -123105141 - RMER4A LTR ERVK 0 466 290 7 863 279 0 0 0 chr3 36494642 36494673 -123105110 + (CA)n Simple_repeat Simple_repeat 1 31 0 7 863 2275 126 47 49 chr3 36494673 36494696 -123105087 - RMER4A LTR ERVK -177 289 268 7 863 2878 33 27 0 chr3 36494696 36495033 -123104750 + ORR1A1 LTR MaLR 1 346 0 7 863 2275 126 47 49 chr3 36495033 36495306 -123104477 - RMER4A LTR ERVK -199 267 1 7 863 782 286 65 32 chr3 36495360 36495532 -123104251 - B4A SINE B4 -5 287 102 7 863 3105 71 2 5 chr3 36495532 36495929 -123103854 - MTA_Mm LTR MaLR 0 396 1 7 863 782 286 65 32 chr3 36495929 36496034 -123103749 - B4A SINE B4 -191 101 1 7 863 389 287 78 0 chr3 36496546 36496675 -123103108 + ID_B1 SINE B4 86 224 0 7 863 1396 57 11 0 chr3 36496868 36497044 -123102739 + B2_Mm1a SINE B2 2 179 -14 7 863 383 47 340 9 chr3 36497072 36497178 -123102605 + B2_Mm2 SINE B2 47 187 -8 7 863 271 243 85 28 chr3 36497919 36498025 -123101758 - RSINE1 SINE B4 -22 143 32 7 863 693 92 0 0 chr3 36498046 36498144 -123101639 + (TC)n Simple_repeat Simple_repeat 1 98 0 7 863 333 0 0 0 chr3 36498144 36498181 -123101602 + (CA)n Simple_repeat Simple_repeat 1 37 0 7 863 919 169 40 11 chr3 36498777 36498951 -123100832 + B2_Mm2 SINE B2 2 180 -15 7 863 1188 55 0 7 chr3 36498951 36499099 -123100684 + B1_Mus2 SINE Alu 1 147 0 8 863 318 106 0 0 chr3 36499099 36499146 -123100637 + (A)n Simple_repeat Simple_repeat 1 47 0 8 863 354 294 68 27 chr3 36499307 36499454 -123100329 - RSINE1 SINE B4 -7 158 6 8 863 234 0 0 0 chr3 36499483 36499509 -123100274 + (TC)n Simple_repeat Simple_repeat 1 26 0 8 863 308 304 9 56 chr3 36499689 36499797 -123099986 - B3A SINE B2 -60 138 36 8 863 724 236 19 6 chr3 36500327 36500489 -123099294 + RSINE1 SINE B4 2 165 0 1 863 28 29 0 0 chr3 36500508 36500543 -123099240 + AT_rich Low_complexity Low_complexity 1 35 0 2 863 28 48 0 0 chr3 36500937 36500979 -123098804 + AT_rich Low_complexity Low_complexity 1 42 0 3 863 1785 62 4 4 chr3 36501051 36501279 -123098504 - L1Md_F2 LINE L1 -223 6359 6132 4 863 262 176 72 14 chr3 36501434 36501503 -123098280 - PB1D10 SINE Alu -35 82 10 5 863 237 284 54 0 chr3 36501649 36501723 -123098060 - ID SINE ID -146 78 1 6 863 21 0 0 0 chr3 36501979 36502000 -123097783 + AT_rich Low_complexity Low_complexity 1 21 0 7 863 216 373 20 40 chr3 36502587 36502735 -123097048 + L2a LINE L2 2948 3092 -334 8 863 3259 66 31 33 chr3 36503724 36504176 -123095607 - L1Md_F2 LINE L1 -1 6581 6131 9 863 606 242 30 8 chr3 36505582 36505715 -123094068 + B1_Mur1 SINE Alu 1 136 -13 1 863 468 86 0 0 chr3 36505717 36505787 -123093996 + (TAAA)n Simple_repeat Simple_repeat 2 71 0 1 863 683 258 84 0 chr3 36505878 36506056 -123093727 - ID_B1 SINE B4 -8 216 24 1 863 216 0 0 0 chr3 36506743 36506767 -123093016 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1 863 210 311 56 24 chr3 36506801 36506926 -123092857 - B1_Mus1 SINE Alu -6 142 14 1 863 302 161 33 54 chr3 36507785 36507877 -123091906 + Lx4B LINE L1 6965 7054 -4 1 863 390 298 32 16 chr3 36507955 36508081 -123091702 + RSINE1 SINE B4 1 128 -37 1 863 568 275 35 21 chr3 36508268 36508413 -123091370 - B1F SINE Alu 0 149 3 1 863 515 272 80 0 chr3 36508596 36508758 -123091025 + L1MA5 LINE L1 6126 6300 0 1 863 594 159 0 0 chr3 36508804 36508930 -123090853 + (CA)n Simple_repeat Simple_repeat 1 126 0 1 863 545 261 122 75 chr3 36509592 36509952 -123089831 + Charlie1a DNA MER1_type 911 1287 -168 2 863 429 243 28 0 chr3 36510390 36510497 -123089286 + PB1D10 SINE Alu 1 110 -7 2 863 282 285 13 0 chr3 36510622 36510710 -123089073 - ID4_ SINE ID -62 90 2 2 863 412 193 242 39 chr3 36512620 36512798 -123086985 - B3 SINE B2 0 216 3 2 863 504 0 0 0 chr3 36512847 36512903 -123086880 + (TG)n Simple_repeat Simple_repeat 2 57 0 2 863 323 211 236 19 chr3 36512912 36513018 -123086765 - RSINE1 SINE B4 -34 131 3 2 863 873 71 4 16 chr3 36513149 36513295 -123086488 + B1_Mus2 SINE Alu 1 148 0 2 863 428 195 93 0 chr3 36513380 36513498 -123086285 + L1M2 LINE L1 3556 3684 -2459 2 863 491 96 0 12 chr3 36513498 36513582 -123086201 + (CA)n Simple_repeat Simple_repeat 2 84 0 2 863 249 310 35 9 chr3 36513857 36513971 -123085812 + PB1D10 SINE Alu 1 117 0 2 863 2365 259 72 102 chr3 36513980 36514049 -123085734 + L1M2 LINE L1 3923 3988 -2155 2 863 758 188 214 11 chr3 36514049 36514227 -123085556 + B3 SINE B2 2 215 -1 3 863 2365 259 72 102 chr3 36514227 36514606 -123085177 + L1M2 LINE L1 3989 4375 -1768 2 863 394 202 0 25 chr3 36514606 36514687 -123085096 + ID SINE ID 1 79 -145 3 863 2365 259 72 102 chr3 36514687 36514752 -123085031 + L1M2 LINE L1 4376 4443 -1700 2 863 633 207 0 0 chr3 36514752 36514863 -123084920 + PB1D9 SINE Alu 4 114 -6 3 863 2365 259 72 102 chr3 36514863 36515195 -123084588 + L1M2 LINE L1 4444 4779 -1364 2 863 4507 44 21 18 chr3 36515195 36515768 -123084015 + L1_Mus1 LINE L1 5991 6565 -2 3 863 2365 259 72 102 chr3 36515768 36516017 -123083766 + L1M2 LINE L1 4780 5050 -1093 2 863 616 204 43 7 chr3 36516017 36516155 -123083628 + B1_Mur2 SINE Alu 5 147 -2 3 863 2365 259 72 102 chr3 36516155 36516376 -123083407 + L1M2 LINE L1 5051 5279 -864 2 863 669 239 154 49 chr3 36516431 36516775 -123083008 + RMER5 LTR ERV1 81 460 -74 3 863 279 79 0 0 chr3 36516827 36516865 -123082918 + (CA)n Simple_repeat Simple_repeat 1 38 0 3 863 1560 153 79 13 chr3 36518629 36518947 -123080836 + ORR1C2 LTR MaLR 37 375 -9 3 863 2376 81 15 6 chr3 36518949 36519273 -123080510 + ORR1A2 LTR MaLR 1 327 0 3 863 294 322 43 11 chr3 36519797 36519891 -123079892 - L2b LINE L2 -17 3358 3262 3 863 554 202 0 56 chr3 36520735 36520861 -123078922 + PB1D9 SINE Alu 2 120 0 4 863 417 265 41 33 chr3 36521602 36521723 -123078060 - ID_B1 SINE B4 -9 215 94 4 863 355 257 14 0 chr3 36521771 36521841 -123077942 + ID4_ SINE ID 2 72 -11 4 863 342 0 0 0 chr3 36521842 36521880 -123077903 + (CA)n Simple_repeat Simple_repeat 1 38 0 4 863 226 0 73 49 chr3 36521892 36521933 -123077850 + (CAAAAA)n Simple_repeat Simple_repeat 2 43 0 4 863 308 24 0 24 chr3 36522027 36522069 -123077714 + (TAAAA)n Simple_repeat Simple_repeat 2 42 0 4 863 333 0 0 0 chr3 36522827 36522864 -123076919 + (TC)n Simple_repeat Simple_repeat 2 38 0 4 863 288 0 0 0 chr3 36522864 36522895 -123076888 + (TG)n Simple_repeat Simple_repeat 1 32 0 4 863 404 250 0 11 chr3 36522919 36523012 -123076771 - B3A SINE B2 -79 119 28 4 863 354 312 0 9 chr3 36523107 36523217 -123076566 - B1F1 SINE Alu -5 144 36 4 863 328 276 40 63 chr3 36523695 36523869 -123075914 - L1ME4a LINE L1 -19 6105 5936 5 863 557 147 9 0 chr3 36523869 36523978 -123075805 + (TA)n Simple_repeat Simple_repeat 2 111 0 5 863 325 299 191 18 chr3 36524090 36524315 -123075468 + L1M5 LINE L1 4920 5183 -963 5 863 462 170 286 0 chr3 36524874 36524986 -123074797 + B1_Mur2 SINE Alu 1 144 -5 5 863 895 139 0 11 chr3 36526079 36526261 -123073522 + (CA)n Simple_repeat Simple_repeat 1 180 0 5 863 397 204 8 8 chr3 36526288 36526421 -123073362 + (CA)n Simple_repeat Simple_repeat 2 134 0 5 863 880 248 67 5 chr3 36526434 36526629 -123073154 + B3 SINE B2 2 208 -8 5 863 225 304 51 25 chr3 36526705 36526823 -123072960 + L1M4 LINE L1 4908 5028 -1118 5 863 1221 34 0 13 chr3 36527462 36527611 -123072172 - B1_Mus2 SINE Alu 0 147 1 5 863 379 244 0 0 chr3 36527621 36527699 -123072084 - B4A SINE B4 -207 85 8 5 863 352 277 39 19 chr3 36527769 36527818 -123071965 - B3A SINE B2 -3 195 145 5 863 216 0 0 0 chr3 36527818 36527842 -123071941 + (TG)n Simple_repeat Simple_repeat 1 24 0 6 863 352 277 39 19 chr3 36527842 36527895 -123071888 - B3A SINE B2 -54 144 92 5 863 1990 244 42 15 chr3 36527896 36528416 -123071367 + RLTR20C LTR ERVK 1 534 0 6 863 250 247 141 0 chr3 36528416 36528499 -123071284 - B3A SINE B2 -103 95 1 5 863 225 94 0 0 chr3 36528616 36528648 -123071135 + (TTC)n Simple_repeat Simple_repeat 2 33 0 6 863 334 316 0 42 chr3 36529506 36529625 -123070158 - PB1D10 SINE Alu -2 115 2 6 863 254 275 42 42 chr3 36529690 36529785 -123069998 + MT2B LTR ERVL 163 257 -344 6 863 656 165 26 0 chr3 36529709 36529824 -123069959 + B1_Mur2 SINE Alu 26 143 -6 6 863 548 148 0 9 chr3 36529824 36529933 -123069850 + GA-rich Low_complexity Low_complexity 1 108 0 6 863 519 271 100 6 chr3 36529974 36530134 -123069649 + B4 SINE B4 117 291 -1 6 863 365 335 0 0 chr3 36531009 36531188 -123068595 + (TAG)n Simple_repeat Simple_repeat 2 180 0 6 863 236 264 68 11 chr3 36531193 36531281 -123068502 + ID_B1 SINE B4 123 215 -9 6 863 1074 16 0 0 chr3 36531282 36531406 -123068377 + (CAAAC)n Simple_repeat Simple_repeat 2 125 0 7 863 2286 117 3 3 chr3 36532131 36532473 -123067310 + Lx2 LINE L1 6656 6997 0 7 863 687 196 14 14 chr3 36532639 36532784 -123066999 + B3 SINE B2 70 214 -2 7 863 335 225 45 90 chr3 36532830 36532986 -123066797 + B1F1 SINE Alu 1 149 0 7 863 500 151 39 18 chr3 36533895 36534231 -123065552 + (TCTA)n Simple_repeat Simple_repeat 1 343 0 7 863 555 146 0 0 chr3 36534696 36534826 -123064957 + (CCTG)n Simple_repeat Simple_repeat 1 130 0 7 863 1626 110 136 67 chr3 36535139 36535470 -123064313 + ORR1B1 LTR MaLR 41 394 0 7 863 1129 75 0 7 chr3 36536359 36536507 -123063276 - B1_Mm SINE Alu 0 147 1 7 863 315 306 59 15 chr3 36536515 36536651 -123063132 - B1F1 SINE Alu -7 142 1 7 863 364 213 0 16 chr3 36537591 36537720 -123062063 + (TG)n Simple_repeat Simple_repeat 1 127 0 7 863 485 262 72 52 chr3 36537740 36537933 -123061850 - B3 SINE B2 -15 201 5 8 863 249 203 94 0 chr3 36538401 36538465 -123061318 - B1F SINE Alu -5 144 75 8 863 225 258 31 31 chr3 36538467 36538563 -123061220 + MurSatRep1 Unknown Unknown 230 325 -1812 8 863 238 333 0 0 chr3 36538781 36538844 -123060939 + MTEb LTR MaLR 1 63 -316 8 863 302 231 103 7 chr3 36538869 36539022 -123060761 + MTEb LTR MaLR 159 379 0 8 863 318 277 35 42 chr3 36539074 36539217 -123060566 + B1F1 SINE Alu 1 142 -7 8 863 998 157 49 0 chr3 36539846 36540031 -123059752 - B3 SINE B2 -21 195 2 8 863 25 0 0 0 chr3 36540072 36540097 -123059686 + AT_rich Low_complexity Low_complexity 1 25 0 8 863 290 250 42 0 chr3 36540182 36540254 -123059529 - ID_B1 SINE B4 -63 161 87 8 863 497 296 112 34 chr3 36540937 36541206 -123058577 - MER2 DNA MER2_type -14 331 42 8 863 346 380 32 5 chr3 36541914 36542099 -123057684 - MIRb SINE MIR -72 196 7 8 863 324 120 0 0 chr3 36542111 36542161 -123057622 + (A)n Simple_repeat Simple_repeat 1 50 0 9 863 202 167 0 0 chr3 36542588 36542624 -123057159 - L2c LINE L2 -220 3167 3132 9 863 903 132 0 0 chr3 36543298 36543449 -123056334 + (GGGA)n Simple_repeat Simple_repeat 4 154 0 9 863 14825 71 12 10 chr3 36544161 36546759 -123053024 + L1VL2 LINE L1 388 2989 -626 9 863 2521 126 20 46 chr3 36546959 36547416 -123052367 + Lx2 LINE L1 6551 6995 -2 9 863 334 252 51 51 chr3 36547944 36547962 -123051821 - ID_B1 SINE B4 0 224 87 9 863 462 203 25 27 chr3 36547962 36548082 -123051701 - B1F1 SINE Alu -16 133 6 9 863 983 316 24 56 chr3 36548332 36548835 -123050948 + MER44B DNA MER2_type 16 502 -48 9 863 274 320 26 0 chr3 36550850 36550928 -123048855 + Charlie12 DNA MER1_type 1 80 -2793 9 863 547 346 114 12 chr3 36552108 36552354 -123047429 - B4A SINE B4 -19 273 3 9 863 360 154 0 0 chr3 36552445 36552507 -123047276 + T-rich Low_complexity Low_complexity 17 78 0 1 863 1196 54 0 0 chr3 36552507 36552654 -123047129 - B1_Mus2 SINE Alu 0 147 1 1 863 360 154 0 0 chr3 36552654 36552669 -123047114 + T-rich Low_complexity Low_complexity 2 16 0 1 863 234 0 0 0 chr3 36553377 36553403 -123046380 + (A)n Simple_repeat Simple_repeat 1 26 0 1 863 242 204 0 0 chr3 36554605 36554654 -123045129 - B1F SINE Alu 0 149 101 1 863 482 339 56 22 chr3 36554714 36555037 -123044746 + MLT1A0 LTR MaLR 20 353 -12 1 863 393 204 69 30 chr3 36555137 36555238 -123044545 - PB1D7 SINE Alu -2 118 14 1 863 314 273 9 66 chr3 36556082 36556188 -123043595 + PB1 SINE Alu 20 119 -8 1 863 348 233 327 6 chr3 36556269 36556444 -123043339 + MLT1A1 LTR MaLR 177 407 -1 1 863 258 105 0 0 chr3 36556480 36556518 -123043265 + (CAT)n Simple_repeat Simple_repeat 1 38 0 1 863 1475 167 134 56 chr3 36556617 36556991 -123042792 - MTD LTR MaLR -8 411 9 1 863 348 193 179 12 chr3 36557057 36557141 -123042642 - PB1D10 SINE Alu -8 109 12 1 863 380 41 0 0 chr3 36557872 36557921 -123041862 + HAL1-3A_ME LINE L1 1975 2023 -835 1 863 329 330 9 0 chr3 36558569 36558675 -123041108 - PB1D10 SINE Alu -10 107 1 1 863 506 244 327 0 chr3 36558746 36558902 -123040881 - B3 SINE B2 -9 207 1 1 863 897 244 38 19 chr3 36559003 36559212 -123040571 - B3 SINE B2 -3 213 1 1 863 204 40 0 0 chr3 36559748 36559773 -123040010 + (TG)n Simple_repeat Simple_repeat 1 25 0 1 863 509 288 16 0 chr3 36560587 36560712 -123039071 - B3A SINE B2 -70 128 2 1 863 633 248 0 20 chr3 36561048 36561187 -123038596 - ID_B1 SINE B4 0 224 88 1 863 408 40 0 0 chr3 36561187 36561237 -123038546 + (TTA)n Simple_repeat Simple_repeat 2 51 0 1 863 933 42 0 0 chr3 36561245 36561357 -123038426 - B1_Mm SINE Alu -2 145 26 1 863 449 239 93 8 chr3 36562061 36562179 -123037604 + L1MA7 LINE L1 5912 6039 -252 1 863 316 260 0 55 chr3 36562168 36562278 -123037505 + L1MA7 LINE L1 6184 6287 -4 1 863 378 319 34 0 chr3 36562278 36562397 -123037386 - B1F1 SINE Alu -21 128 6 1 863 268 250 16 0 chr3 36562453 36562517 -123037266 + PB1D7 SINE Alu 55 119 -1 1 863 180 111 0 0 chr3 36562755 36562782 -123037001 + (TC)n Simple_repeat Simple_repeat 2 28 0 1 863 5059 148 11 8 chr3 36562854 36563683 -123036100 + Lx2B LINE L1 6169 6999 -1 1 863 478 226 0 0 chr3 36564491 36564584 -123035199 + PB1D10 SINE Alu 23 115 -2 1 863 1048 153 128 0 chr3 36564737 36564933 -123034850 + URR1A DNA MER1_type 5 225 -1 1 863 290 286 13 0 chr3 36565392 36565469 -123034314 - PB1 SINE Alu -49 78 1 1 863 923 228 4 89 chr3 36566148 36566384 -123033399 + B3 SINE B2 1 216 0 1 863 510 202 39 0 chr3 36567984 36568088 -123031695 + ID_B1 SINE B4 104 211 -13 1 864 262 245 0 19 chr3 36569461 36569515 -123030268 + B1F1 SINE Alu 6 58 -91 1 864 432 271 16 56 chr3 36569598 36569723 -123030060 + PB1D7 SINE Alu 1 120 0 1 864 323 74 37 0 chr3 36570808 36570862 -123028921 + (CAAAA)n Simple_repeat Simple_repeat 2 57 0 1 864 459 0 0 0 chr3 36571208 36571259 -123028524 + (TTTA)n Simple_repeat Simple_repeat 4 54 0 1 864 202 27 51 51 chr3 36571700 36571739 -123028044 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 1 864 309 51 0 0 chr3 36571758 36571797 -123027986 + (TAA)n Simple_repeat Simple_repeat 2 40 0 1 864 222 259 171 12 chr3 36571797 36571879 -123027904 + PB1 SINE Alu 2 96 -31 1 864 198 0 0 0 chr3 36572268 36572290 -123027493 + (T)n Simple_repeat Simple_repeat 1 22 0 1 864 472 270 0 0 chr3 36573561 36573661 -123026122 - B1F SINE Alu -34 115 16 1 864 1630 159 46 102 chr3 36573906 36574231 -123025552 + ORR1D1 LTR MaLR 1 314 -60 1 864 1254 41 0 0 chr3 36574231 36574378 -123025405 - B1_Mm SINE Alu 0 147 1 1 864 1630 159 46 102 chr3 36574378 36574444 -123025339 + ORR1D1 LTR MaLR 315 370 -4 1 864 236 307 39 29 chr3 36575354 36575458 -123024325 - MER5A DNA MER1_type -34 155 51 1 864 221 208 0 19 chr3 36577906 36577960 -123021823 + (TTAA)n Simple_repeat Simple_repeat 3 55 0 1 864 1123 107 76 38 chr3 36578246 36578430 -123021353 - B2_Mm2 SINE B2 -4 191 1 1 864 474 286 50 0 chr3 36579200 36579319 -123020464 + RSINE1 SINE B4 5 129 -36 1 864 677 237 14 14 chr3 36579474 36579615 -123020168 - B1_Mur1 SINE Alu -6 143 3 1 864 208 0 62 0 chr3 36579772 36579804 -123019979 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 1 864 758 74 0 0 chr3 36579804 36579912 -123019871 - B1_Mus2 SINE Alu -9 138 31 1 864 403 241 64 9 chr3 36581170 36581279 -123018504 - PB1D7 SINE Alu 0 120 6 1 864 245 316 0 13 chr3 36581211 36581288 -123018495 - B4A SINE B4 -135 157 82 1 864 3411 116 28 2 chr3 36582401 36582895 -123016888 + L1_Mus3 LINE L1 6126 6632 -6 1 864 450 132 0 0 chr3 36583595 36583671 -123016112 + (GAAAA)n Simple_repeat Simple_repeat 2 77 0 1 864 459 78 0 0 chr3 36583712 36583776 -123016007 + (TTTA)n Simple_repeat Simple_repeat 1 64 0 1 864 251 324 0 0 chr3 36583783 36583857 -123015926 + tRNA-Ala-GCY_ tRNA tRNA 1 74 -1 1 864 309 272 89 103 chr3 36583861 36584230 -123015553 + HAL1 LINE L1 1133 1496 -1011 1 864 279 71 0 0 chr3 36585789 36585831 -123013952 + (CCAA)n Simple_repeat Simple_repeat 2 43 0 1 864 244 200 13 13 chr3 36586748 36586824 -123012959 + (TG)n Simple_repeat Simple_repeat 1 76 0 1 864 242 321 0 12 chr3 36586932 36587017 -123012766 + G-rich Low_complexity Low_complexity 4 87 0 1 864 24 53 0 0 chr3 36588723 36588761 -123011022 + GC_rich Low_complexity Low_complexity 1 38 0 1 864 210 111 43 43 chr3 36589092 36589139 -123010644 + GA-rich Low_complexity Low_complexity 4 50 0 1 864 468 231 0 18 chr3 36589522 36589632 -123010151 - B1F SINE Alu -1 148 41 1 864 417 221 25 181 chr3 36589656 36589855 -123009928 - B4 SINE B4 -4 288 121 1 864 194 62 0 30 chr3 36590599 36590632 -123009151 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 1 864 2090 47 7 0 chr3 36590682 36590957 -123008826 - ORR1A2 LTR MaLR -8 319 43 1 864 1078 260 35 56 chr3 36591493 36591888 -123007895 - MLT1B LTR MaLR -1 389 3 1 864 382 267 184 27 chr3 36591945 36592130 -123007653 - ID_B1 SINE B4 -8 216 3 1 864 21 0 0 0 chr3 36592130 36592151 -123007632 + AT_rich Low_complexity Low_complexity 1 21 0 1 864 387 245 70 102 chr3 36592708 36593022 -123006761 + Lx9 LINE L1 7316 7619 -25 1 864 858 109 0 0 chr3 36593266 36593394 -123006389 + (TTTC)n Simple_repeat Simple_repeat 2 129 0 1 864 972 141 0 19 chr3 36594001 36594160 -123005623 + MTC LTR MaLR 258 413 -8 1 864 340 290 55 31 chr3 36594260 36594388 -123005395 + MamRep1161 DNA TcMar 2 132 -825 1 864 349 373 15 0 chr3 36594737 36594871 -123004912 - ID_B1 SINE B4 -8 216 81 1 864 557 234 36 7 chr3 36594892 36595022 -123004761 + B1_Mur1 SINE Alu 2 136 -13 1 864 216 0 0 0 chr3 36595022 36595046 -123004737 + (CAAAA)n Simple_repeat Simple_repeat 1 24 0 1 864 215 286 44 77 chr3 36595109 36595200 -123004583 - ID SINE ID -135 89 2 1 864 251 238 12 12 chr3 36597007 36597092 -123002691 + (CAAA)n Simple_repeat Simple_repeat 2 86 0 1 864 628 269 64 11 chr3 36597219 36597407 -123002376 + B3A SINE B2 1 198 0 1 864 318 321 92 35 chr3 36597715 36597857 -123001926 + RSINE1 SINE B4 4 153 -12 1 864 438 69 0 0 chr3 36597861 36597919 -123001864 + (TAAA)n Simple_repeat Simple_repeat 4 61 0 1 864 291 241 0 0 chr3 36599413 36599496 -123000287 + (CACCAT)n Simple_repeat Simple_repeat 5 87 0 1 864 201 333 15 45 chr3 36599808 36599940 -122999843 + L2 LINE L2 330 457 -2962 1 864 34526 78 2 18 chr3 36600350 36605630 -122994153 - L1Md_A LINE L1 -218 5665 474 1 864 377 228 43 21 chr3 36605665 36605759 -122994024 - B1_Mur2 SINE Alu -1 148 53 1 864 1005 137 219 0 chr3 36606991 36607174 -122992609 - URR1A DNA MER1_type -3 223 1 1 864 427 307 19 7 chr3 36607493 36607647 -122992136 - B4 SINE B4 -136 156 1 1 864 218 250 0 19 chr3 36607742 36607795 -122991988 + B3A SINE B2 3 54 -144 1 864 632 271 55 55 chr3 36607891 36608090 -122991693 + ID_B1 SINE B4 9 207 -17 1 864 2139 149 64 10 chr3 36609378 36609770 -122990013 - MTC LTR MaLR -8 413 1 1 864 246 305 275 0 chr3 36609850 36609981 -122989802 + B4A SINE B4 126 292 0 1 864 350 222 98 22 chr3 36610062 36610154 -122989629 + PB1D10 SINE Alu 1 99 -18 1 864 978 202 45 0 chr3 36610164 36610362 -122989421 - ID_B1 SINE B4 -16 208 2 1 864 549 0 0 0 chr3 36611226 36611287 -122988496 + (TC)n Simple_repeat Simple_repeat 2 62 0 1 864 371 229 205 29 chr3 36612179 36612350 -122987433 - ID_B1 SINE B4 -12 212 12 1 864 295 221 15 0 chr3 36612422 36612490 -122987293 + PB1D10 SINE Alu 49 117 0 1 864 30 27 0 0 chr3 36612502 36612539 -122987244 + AT_rich Low_complexity Low_complexity 1 37 0 1 864 243 317 30 119 chr3 36612598 36612834 -122986949 - MLT2B1 LTR ERVL -7 555 341 1 864 408 298 30 0 chr3 36612864 36612995 -122986788 - MLT2B1 LTR ERVL -312 208 74 1 864 1596 261 35 21 chr3 36613260 36613745 -122986038 + L1M2 LINE L1 4503 4994 -1149 1 864 231 136 68 0 chr3 36613832 36613891 -122985892 - L1MEd LINE L1 -5014 1105 1043 1 864 180 179 0 0 chr3 36614012 36614051 -122985732 + (TA)n Simple_repeat Simple_repeat 1 39 0 1 864 275 200 0 0 chr3 36614223 36614278 -122985505 + RSINE1 SINE B4 44 98 -67 1 864 35 63 0 0 chr3 36614322 36614385 -122985398 + AT_rich Low_complexity Low_complexity 1 63 0 2 864 236 290 64 83 chr3 36614386 36614495 -122985288 + PB1D10 SINE Alu 3 109 -8 2 864 243 0 0 0 chr3 36614527 36614554 -122985229 + (CAAT)n Simple_repeat Simple_repeat 2 28 0 2 864 22 35 0 0 chr3 36615276 36615305 -122984478 + AT_rich Low_complexity Low_complexity 1 29 0 2 864 4589 208 82 26 chr3 36615305 36615428 -122984355 - Lx9 LINE L1 0 7644 7528 2 864 423 0 0 0 chr3 36615428 36615475 -122984308 + (TAA)n Simple_repeat Simple_repeat 2 48 0 2 864 4589 208 82 26 chr3 36615475 36616404 -122983379 - Lx9 LINE L1 -117 7527 6534 2 864 1722 174 124 53 chr3 36616388 36616542 -122983241 + Lx9 LINE L1 7178 7323 -321 2 864 180 0 0 0 chr3 36616542 36616562 -122983221 + (CAA)n Simple_repeat Simple_repeat 2 21 0 2 864 1722 174 124 53 chr3 36616562 36616710 -122983073 + Lx9 LINE L1 7324 7476 -168 2 864 465 34 0 0 chr3 36616710 36616769 -122983014 + (TG)n Simple_repeat Simple_repeat 1 59 0 2 864 1722 174 124 53 chr3 36616769 36616901 -122982882 + Lx9 LINE L1 7477 7643 -1 2 864 968 171 82 5 chr3 36616957 36617151 -122982632 - B3 SINE B2 -6 210 2 2 864 3711 69 123 15 chr3 36617379 36617646 -122982137 - MT2B2 LTR ERVL 0 584 280 2 864 576 0 0 0 chr3 36617646 36617710 -122982073 + (TG)n Simple_repeat Simple_repeat 2 65 0 2 864 3711 69 123 15 chr3 36617710 36617969 -122981814 - MT2B2 LTR ERVL -305 279 2 2 864 309 262 64 27 chr3 36618927 36619037 -122980746 - PB1D10 SINE Alu -1 116 3 2 864 434 151 11 23 chr3 36619558 36619646 -122980137 - L1ME3A LINE L1 -233 5940 5854 2 864 607 179 23 39 chr3 36621603 36621731 -122978052 - B1_Mur1 SINE Alu -2 147 22 2 864 433 248 101 0 chr3 36622619 36622728 -122977055 - PB1 SINE Alu -7 120 1 2 864 778 319 129 12 chr3 36622969 36623388 -122976395 - MLT1H LTR MaLR 0 549 82 2 864 215 154 0 15 chr3 36623561 36623627 -122976156 + (TTTG)n Simple_repeat Simple_repeat 1 65 0 2 864 609 202 0 0 chr3 36624203 36624312 -122975471 + PB1D9 SINE Alu 5 113 -7 2 864 283 136 34 0 chr3 36624319 36624378 -122975405 + GA-rich Low_complexity Low_complexity 3 63 0 2 864 953 314 92 16 chr3 36624898 36625344 -122974439 + Lx8 LINE L1 6936 7415 -58 2 864 244 344 83 35 chr3 36625464 36625633 -122974150 + L2 LINE L2 2703 2879 -540 2 864 332 200 71 0 chr3 36625809 36625879 -122973904 - PB1D10 SINE Alu -23 94 20 2 864 207 0 0 0 chr3 36625910 36625933 -122973850 + (TG)n Simple_repeat Simple_repeat 2 24 0 2 864 302 250 63 55 chr3 36626069 36626196 -122973587 - L1MEg LINE L1 -5166 918 791 2 864 542 99 11 0 chr3 36626742 36626833 -122972950 + (TA)n Simple_repeat Simple_repeat 2 93 0 2 864 239 286 151 9 chr3 36626874 36626980 -122972803 + MIR SINE MIR 41 161 -101 2 864 772 298 39 21 chr3 36626984 36627269 -122972514 + B4 SINE B4 3 292 0 2 864 251 221 115 13 chr3 36629636 36629714 -122970069 + MLT1L LTR MaLR 285 370 -240 2 864 376 244 12 18 chr3 36629939 36630106 -122969677 + GA-rich Low_complexity Low_complexity 4 169 0 2 864 5602 130 29 4 chr3 36631011 36631915 -122967868 - Lx2 LINE L1 0 6997 6072 2 864 308 43 0 21 chr3 36632580 36632627 -122967156 + (CAAAA)n Simple_repeat Simple_repeat 1 46 0 2 864 562 350 38 31 chr3 36633296 36633585 -122966198 - MER44B DNA MER2_type -252 298 8 2 864 198 71 0 0 chr3 36633836 36633864 -122965919 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 2 864 801 288 10 0 chr3 36633864 36634069 -122965714 - ID_B1 SINE B4 -13 211 5 2 864 317 284 120 19 chr3 36634296 36634454 -122965329 - MER2 DNA MER2_type -12 333 160 2 864 348 265 48 19 chr3 36634460 36634564 -122965219 - PB1D10 SINE Alu -8 109 3 2 864 697 243 49 84 chr3 36635308 36635472 -122964311 - ID_B1 SINE B4 -3 221 57 2 864 459 0 0 0 chr3 36635472 36635523 -122964260 + (TTTA)n Simple_repeat Simple_repeat 2 52 0 2 864 1137 58 0 0 chr3 36635523 36635660 -122964123 - B1_Mus1 SINE Alu -10 138 2 2 864 697 243 49 84 chr3 36635660 36635719 -122964064 - ID SINE ID -168 56 6 2 864 1302 98 0 3 chr3 36637429 36637776 -122962007 + (TTTC)n Simple_repeat Simple_repeat 1 345 0 2 864 835 259 85 0 chr3 36637776 36637965 -122961818 - ID_B1 SINE B4 -19 205 1 2 864 376 303 78 32 chr3 36638264 36638482 -122961301 + LTR16E2 LTR ERVL 341 568 0 2 864 8434 40 0 0 chr3 36638774 36640199 -122959584 - L1Md_F2 LINE L1 -12 6570 5146 2 864 1990 62 0 0 chr3 36640195 36640439 -122959344 + L1Md_F2 LINE L1 4872 5115 -768 2 864 216 0 0 0 chr3 36640821 36640845 -122958938 + (CAAAC)n Simple_repeat Simple_repeat 2 25 0 2 864 237 292 89 11 chr3 36641127 36641217 -122958566 + MLT1J2 LTR MaLR 59 155 -293 2 864 302 283 10 20 chr3 36643214 36643248 -122956535 + polypurine Low_complexity Low_complexity 2 35 0 2 864 1188 103 0 0 chr3 36643248 36643422 -122956361 + (GGGGA)n Simple_repeat Simple_repeat 4 177 0 2 864 302 283 10 20 chr3 36643422 36643488 -122956295 + polypurine Low_complexity Low_complexity 36 99 0 2 864 513 0 0 0 chr3 36643702 36643759 -122956024 + (TTTA)n Simple_repeat Simple_repeat 4 60 0 2 864 5978 68 5 1 chr3 36643761 36644513 -122955270 - L1_Mus1 LINE L1 0 6567 5813 2 864 227 333 82 18 chr3 36645369 36645479 -122954304 - MIRm SINE MIR -144 132 16 2 864 2024 97 6 56 chr3 36645586 36645924 -122953859 - ORR1A4 LTR MaLR -8 321 1 2 864 1690 228 10 26 chr3 36645924 36646307 -122953476 - MTD LTR MaLR -38 381 5 2 864 500 172 78 172 chr3 36646311 36646543 -122953240 - MTD-int LTR MaLR 0 1258 1049 2 864 617 243 63 167 chr3 36646619 36646906 -122952877 - MTE2a LTR MaLR -122 257 1 2 864 426 338 15 0 chr3 36647291 36647427 -122952356 - ID_B1 SINE B4 -3 221 84 2 864 286 238 37 0 chr3 36647423 36647498 -122952285 - PB1D10 SINE Alu -44 105 18 2 864 21 36 0 0 chr3 36647894 36647922 -122951861 + AT_rich Low_complexity Low_complexity 1 28 0 2 864 2422 189 28 169 chr3 36648745 36649453 -122950330 - RMER19C LTR ERVK -1 610 3 2 864 181 176 0 0 chr3 36650210 36650244 -122949539 + MIR SINE MIR 110 143 -119 2 864 1782 204 96 10 chr3 36650267 36650653 -122949130 - MTD LTR MaLR 0 419 1 2 864 201 340 106 10 chr3 36652126 36652230 -122947553 + MIRc SINE MIR 45 158 -110 2 864 251 254 30 0 chr3 36652779 36652846 -122946937 - MLT1B LTR MaLR -16 374 306 2 864 709 265 57 38 chr3 36654827 36655023 -122944760 + ID_B1 SINE B4 9 211 -13 2 864 197 33 0 32 chr3 36655023 36655054 -122944729 + (CAAAA)n Simple_repeat Simple_repeat 5 34 0 2 864 709 265 57 38 chr3 36655054 36655069 -122944714 + ID_B1 SINE B4 212 224 0 2 864 944 215 70 9 chr3 36656097 36656327 -122943456 - B4A SINE B4 -7 285 42 2 864 531 261 578 36 chr3 36656635 36656823 -122942960 + MTEb LTR MaLR 3 292 -87 2 864 3280 34 37 0 chr3 36656823 36657205 -122942578 + MTA_Mm LTR MaLR 1 396 0 2 864 8957 46 7 1 chr3 36657205 36658296 -122941487 + MTA_Mm-int LTR MaLR 1 1098 0 2 864 3293 31 37 0 chr3 36658296 36658678 -122941105 + MTA_Mm LTR MaLR 1 396 0 2 864 372 262 12 110 chr3 36658678 36658768 -122941015 + MTEb LTR MaLR 293 373 -6 2 864 243 141 455 0 chr3 36659077 36659178 -122940605 - B2_Mm2 SINE B2 -2 193 47 2 864 1263 119 11 0 chr3 36659244 36659420 -122940363 - B2_Mm1t SINE B2 -14 179 2 2 864 411 226 29 10 chr3 36659574 36659677 -122940106 - PB1D10 SINE Alu -6 111 7 2 864 281 272 73 55 chr3 36659598 36659707 -122940076 - ID_B1 SINE B4 -114 178 68 2 864 312 215 109 0 chr3 36660429 36660522 -122939261 + PB1D10 SINE Alu 6 111 -9 2 864 2024 122 35 35 chr3 36660722 36661063 -122938720 + ORR1B2 LTR MaLR 2 342 -25 2 864 288 190 89 35 chr3 36661078 36661247 -122938536 + (CTATA)n Simple_repeat Simple_repeat 2 179 0 2 864 216 266 22 71 chr3 36661168 36661350 -122938433 + (CA)n Simple_repeat Simple_repeat 1 173 0 2 864 216 263 18 73 chr3 36661372 36661536 -122938247 + (CA)n Simple_repeat Simple_repeat 1 155 0 2 864 24 0 0 0 chr3 36662179 36662203 -122937580 + AT_rich Low_complexity Low_complexity 1 24 0 2 864 223 295 10 50 chr3 36662342 36662442 -122937341 - PB1D10 SINE Alu -1 116 21 2 864 305 278 14 0 chr3 36662698 36662770 -122937013 + ID2 SINE ID 2 74 -9 2 864 183 80 0 0 chr3 36662772 36662797 -122936986 + (AGGGGG)n Simple_repeat Simple_repeat 3 27 0 2 864 604 265 34 0 chr3 36663003 36663150 -122936633 + ID_B1 SINE B4 64 215 -9 2 864 324 0 0 0 chr3 36663161 36663197 -122936586 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 2 864 273 210 16 0 chr3 36663833 36663895 -122935888 - MER63B DNA AcHobo -46 390 328 2 864 189 0 0 0 chr3 36663942 36663963 -122935820 + (GGAA)n Simple_repeat Simple_repeat 2 22 0 2 864 31 26 0 0 chr3 36664034 36664072 -122935711 + AT_rich Low_complexity Low_complexity 1 38 0 2 864 405 58 0 0 chr3 36664165 36664217 -122935566 + (GA)n Simple_repeat Simple_repeat 2 53 0 2 864 996 268 130 16 chr3 36664265 36664633 -122935150 - Lx7 LINE L1 -334 7362 6953 2 864 2000 238 52 37 chr3 36664702 36665216 -122934567 - Lx7 LINE L1 -693 7003 6482 2 864 245 273 12 49 chr3 36666375 36666456 -122933327 + PB1D10 SINE Alu 14 91 -26 2 864 2367 134 38 0 chr3 36666456 36666852 -122932931 - MTC LTR MaLR 0 421 11 2 864 267 267 17 0 chr3 36666887 36666947 -122932836 + ID4 SINE ID 23 83 0 2 864 427 262 19 10 chr3 36667239 36667343 -122932440 + PB1D10 SINE Alu 3 107 -10 2 864 259 316 24 57 chr3 36667367 36667491 -122932292 + RSINE1 SINE B4 26 145 -20 2 864 273 119 0 0 chr3 36667546 36667588 -122932195 + (CAAT)n Simple_repeat Simple_repeat 2 43 0 2 864 459 238 99 71 chr3 36667633 36667849 -122931934 + L1MA6 LINE L1 5295 5529 -771 2 864 387 284 11 0 chr3 36667867 36667962 -122931821 - ID_B1 SINE B4 -34 190 95 2 864 243 289 145 0 chr3 36668058 36668141 -122931642 - ID_B1 SINE B4 -129 95 1 2 864 1155 280 78 3 chr3 36668154 36668537 -122931246 + L1MA6 LINE L1 5528 5939 -361 2 864 219 103 0 0 chr3 36668538 36668577 -122931206 + (TCTG)n Simple_repeat Simple_repeat 4 42 0 2 864 491 337 106 23 chr3 36670546 36670810 -122928973 - B4A SINE B4 -2 290 5 2 864 201 222 35 53 chr3 36671196 36671253 -122928530 + L4 LINE RTE 1780 1835 -194 2 864 342 0 0 0 chr3 36671513 36671551 -122928232 + (CA)n Simple_repeat Simple_repeat 2 39 0 2 864 723 24 0 0 chr3 36671551 36671636 -122928147 + (GA)n Simple_repeat Simple_repeat 1 85 0 3 864 255 191 252 34 chr3 36673771 36673890 -122925893 + B1F SINE Alu 5 149 0 3 864 797 280 16 16 chr3 36673960 36674207 -122925576 + B4A SINE B4 1 247 -45 3 864 536 299 20 0 chr3 36674647 36674794 -122924989 + B3A SINE B2 1 150 -48 3 864 362 287 96 0 chr3 36674997 36675133 -122924650 + B1_Mur1 SINE Alu 1 149 0 3 864 1294 235 81 7 chr3 36675415 36675761 -122924022 + ORR1D2 LTR MaLR 1 379 0 3 864 1175 44 0 0 chr3 36675850 36675987 -122923796 + B1_Mm SINE Alu 1 137 -10 3 864 188 0 74 0 chr3 36675987 36676014 -122923769 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 3 864 1440 233 85 22 chr3 36676065 36676109 -122923674 - RLTR20B3 LTR ERVK -53 524 473 3 864 369 0 0 0 chr3 36676109 36676150 -122923633 + (CA)n Simple_repeat Simple_repeat 2 42 0 3 864 1440 233 85 22 chr3 36676150 36676565 -122923218 - RLTR20B3 LTR ERVK -105 472 37 3 864 1085 149 111 20 chr3 36677891 36678089 -122921694 + B3 SINE B2 1 216 0 3 864 715 280 52 5 chr3 36678137 36678387 -122921396 - MTEb LTR MaLR -3 376 56 3 864 2384 174 32 2 chr3 36678387 36678796 -122920987 - MTC LTR MaLR 0 421 1 3 864 271 287 71 41 chr3 36678796 36678848 -122920935 - MTEb LTR MaLR -324 55 3 3 864 188 200 0 43 chr3 36678864 36678911 -122920872 + L3 LINE CR1 3696 3740 -749 3 864 185 281 35 0 chr3 36679641 36679698 -122920085 + MIR SINE MIR 87 145 -117 3 864 927 254 122 7 chr3 36680121 36680391 -122919392 + Lx7 LINE L1 7000 7300 -396 3 864 189 74 0 0 chr3 36680475 36680502 -122919281 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 3 864 587 299 45 36 chr3 36681255 36681477 -122918306 + B4A SINE B4 6 229 -63 3 864 1044 123 0 0 chr3 36681478 36681624 -122918159 + B1_Mur4 SINE Alu 2 147 -3 3 864 451 195 8 8 chr3 36681696 36681815 -122917968 + (CA)n Simple_repeat Simple_repeat 1 119 0 3 864 239 225 26 66 chr3 36682009 36682085 -122917698 - ID4_ SINE ID -6 77 5 3 864 425 246 0 59 chr3 36684257 36684493 -122915290 + CT-rich Low_complexity Low_complexity 1 222 0 3 864 747 0 0 0 chr3 36684814 36684897 -122914886 + (TC)n Simple_repeat Simple_repeat 1 83 0 3 864 526 307 52 55 chr3 36684942 36685232 -122914551 - B4A SINE B4 -3 289 1 3 864 405 0 0 0 chr3 36685933 36685978 -122913805 + (TC)n Simple_repeat Simple_repeat 2 46 0 3 864 252 246 42 42 chr3 36686007 36686079 -122913704 - MIRc SINE MIR -114 154 83 3 864 1129 89 0 14 chr3 36686181 36686329 -122913454 + B1_Mus1 SINE Alu 2 147 -1 3 864 306 0 0 0 chr3 36686821 36686855 -122912928 + (CA)n Simple_repeat Simple_repeat 2 35 0 3 864 867 208 11 11 chr3 36686873 36687053 -122912730 - B3 SINE B2 -36 180 1 3 864 745 265 58 18 chr3 36687053 36687274 -122912509 - B4A SINE B4 -62 230 1 3 864 836 171 226 0 chr3 36687857 36688038 -122911745 - URR1A DNA MER1_type 0 226 5 3 864 427 243 91 49 chr3 36688438 36688570 -122911213 + MTEb LTR MaLR 1 138 -241 3 864 2467 40 6 6 chr3 36688570 36688897 -122910886 - IAPEY2_LTR LTR ERVK 0 357 31 3 864 687 237 87 69 chr3 36688915 36689146 -122910637 + MTEb LTR MaLR 141 375 -4 3 864 2153 212 85 12 chr3 36689499 36690004 -122909779 - Lx7 LINE L1 -1197 6499 5958 3 864 3103 164 4 25 chr3 36690004 36690553 -122909230 - Lx7 LINE L1 -809 5071 4535 3 864 468 0 0 0 chr3 36690670 36690722 -122909061 + (TC)n Simple_repeat Simple_repeat 1 52 0 3 864 6062 242 69 21 chr3 36690736 36693071 -122906712 - Lx7 LINE L1 -346 7350 4889 3 864 858 216 80 5 chr3 36694242 36694442 -122905341 + ID_B1 SINE B4 3 217 -7 3 864 255 202 122 94 chr3 36694555 36694768 -122905015 + L1MEe LINE L1 739 957 -3897 3 864 258 32 0 0 chr3 36695283 36695314 -122904469 + (TA)n Simple_repeat Simple_repeat 1 31 0 3 864 450 53 0 0 chr3 36695314 36695370 -122904413 + (CA)n Simple_repeat Simple_repeat 2 58 0 3 864 36 18 0 35 chr3 36695442 36695481 -122904302 + AT_rich Low_complexity Low_complexity 1 38 0 3 864 2059 67 48 0 chr3 36695481 36695751 -122904032 + L1_Mus1 LINE L1 6285 6567 0 3 864 36 18 0 35 chr3 36695751 36695769 -122904014 + AT_rich Low_complexity Low_complexity 1 18 0 3 864 278 227 196 0 chr3 36696335 36696432 -122903351 + PB1D10 SINE Alu 1 116 -1 3 864 558 0 0 0 chr3 36696459 36696521 -122903262 + (TC)n Simple_repeat Simple_repeat 2 63 0 3 864 1529 276 103 28 chr3 36696540 36697247 -122902536 + L1_Mur3 LINE L1 3980 4739 -1141 3 864 216 0 0 0 chr3 36697361 36697385 -122902398 + (CGTG)n Simple_repeat Simple_repeat 1 24 0 3 864 569 174 16 0 chr3 36697396 36697517 -122902266 + C-rich Low_complexity Low_complexity 1 123 0 3 864 322 189 27 13 chr3 36698244 36698319 -122901464 + PB1D10 SINE Alu 42 117 0 3 864 298 252 82 25 chr3 36698351 36698510 -122901273 - MER96B DNA hAT -64 353 186 3 864 728 306 86 4 chr3 36698623 36698879 -122900904 - B4A SINE B4 -15 277 1 3 864 2813 7 0 0 chr3 36699107 36699417 -122900366 + L1Md_A LINE L1 6273 6582 0 3 864 368 256 124 33 chr3 36699417 36699538 -122900245 - B1F2 SINE Alu -17 132 1 3 864 197 298 36 64 chr3 36699822 36699962 -122899821 - MIRb SINE MIR -14 254 119 3 865 298 245 84 26 chr3 36700343 36700498 -122899285 - L1MA9 LINE L1 -147 6165 6002 3 865 433 241 23 44 chr3 36700542 36700663 -122899120 + B3A SINE B2 3 130 -65 3 865 486 0 0 0 chr3 36700673 36700727 -122899056 + (CA)n Simple_repeat Simple_repeat 1 54 0 3 865 26130 65 5 0 chr3 36701294 36705556 -122894227 + L1Md_F LINE L1 304 4587 -1296 3 865 1368 65 0 0 chr3 36705556 36705709 -122894074 + L1Md_F LINE L1 5434 5586 -297 3 865 8196 40 7 3 chr3 36705709 36706700 -122893083 + L1Md_F2 LINE L1 5587 6581 -1 3 865 1368 65 0 0 chr3 36706700 36706714 -122893069 + L1Md_F LINE L1 5587 5600 -283 3 865 219 152 0 0 chr3 36706982 36707028 -122892755 + (CA)n Simple_repeat Simple_repeat 2 47 0 3 865 573 273 149 51 chr3 36707520 36707948 -122891835 - L1MC4 LINE L1 -804 7238 6769 3 865 359 313 186 30 chr3 36708456 36708789 -122890994 - L1MC4 LINE L1 -1950 5932 5548 3 865 457 276 55 43 chr3 36708789 36708952 -122890831 - MTD LTR MaLR -254 165 1 3 865 390 21 0 0 chr3 36709016 36709063 -122890720 + (TG)n Simple_repeat Simple_repeat 2 48 0 3 865 378 0 0 0 chr3 36709064 36709106 -122890677 + (GA)n Simple_repeat Simple_repeat 2 43 0 3 865 389 351 79 12 chr3 36709807 36710061 -122889722 - L2 LINE L2 -532 2887 2617 3 865 1007 51 7 0 chr3 36712175 36712313 -122887470 + B1_Mus2 SINE Alu 9 147 0 3 865 379 222 25 0 chr3 36712450 36712531 -122887252 - PB1D7 SINE Alu -5 115 33 3 865 279 172 0 123 chr3 36712771 36712844 -122886939 - ID4_ SINE ID -16 67 4 3 865 234 0 0 0 chr3 36712878 36712904 -122886879 + (TG)n Simple_repeat Simple_repeat 1 26 0 3 865 1433 143 91 108 chr3 36713957 36714318 -122885465 - ORR1C2 LTR MaLR 0 384 30 3 865 258 228 0 17 chr3 36714750 36714808 -122884975 + MER5A DNA MER1_type 42 98 -91 3 865 696 259 100 66 chr3 36715804 36716292 -122883491 + MLT1D LTR MaLR 1 505 0 3 865 396 241 26 53 chr3 36716719 36716833 -122882950 - PB1D9 SINE Alu -9 111 1 3 865 673 296 0 25 chr3 36717192 36717355 -122882428 + RSINE1 SINE B4 7 165 0 3 865 406 182 225 45 chr3 36718018 36718196 -122881587 + ID_B1 SINE B4 3 212 -12 3 865 222 128 0 0 chr3 36719341 36719380 -122880403 + (TCTG)n Simple_repeat Simple_repeat 2 40 0 3 865 600 272 61 18 chr3 36719382 36719547 -122880236 - ID_B1 SINE B4 -52 172 1 3 865 304 267 89 0 chr3 36720263 36720353 -122879430 - B4A SINE B4 -103 189 92 3 865 1154 182 87 22 chr3 36720372 36720693 -122879090 - RLTR15 LTR ERVK -17 342 1 3 865 369 286 12 0 chr3 36720699 36720783 -122879000 - B4 SINE B4 -207 85 1 3 865 989 85 23 0 chr3 36722034 36722210 -122877573 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 3 865 210 324 15 0 chr3 36722218 36722286 -122877497 + CT-rich Low_complexity Low_complexity 4 72 0 3 865 512 304 24 8 chr3 36722291 36722417 -122877366 - B1_Mur2 SINE Alu -21 128 1 3 865 282 281 0 15 chr3 36722360 36722425 -122877358 - B4A SINE B4 -151 141 78 3 865 292 265 0 67 chr3 36722598 36722703 -122877080 + CT-rich Low_complexity Low_complexity 4 101 0 3 865 540 68 0 0 chr3 36722742 36722815 -122876968 + (TC)n Simple_repeat Simple_repeat 2 74 0 3 865 246 351 0 0 chr3 36722815 36722872 -122876911 - tRNA-Ala-GCG tRNA tRNA -3 72 16 3 865 252 0 0 0 chr3 36724290 36724318 -122875465 + (T)n Simple_repeat Simple_repeat 1 28 0 3 865 338 257 14 0 chr3 36724414 36724484 -122875299 - ID_B1 SINE B4 -72 152 82 3 865 477 0 0 0 chr3 36724756 36724809 -122874974 + (TG)n Simple_repeat Simple_repeat 2 54 0 3 865 213 309 24 24 chr3 36725155 36725238 -122874545 + MIR SINE MIR 99 181 -81 3 865 1016 294 46 0 chr3 36725839 36726121 -122873662 + MER58B DNA MER1_type 47 341 0 3 865 1595 161 121 70 chr3 36727524 36727640 -122872143 + ORR1B1 LTR MaLR 3 158 -236 3 865 1976 192 33 174 chr3 36727640 36728250 -122871533 + RLTR11A2 LTR ERVK 4 527 0 3 865 1595 161 121 70 chr3 36728250 36728506 -122871277 + ORR1B1 LTR MaLR 159 394 0 3 865 554 295 145 61 chr3 36728596 36728743 -122871040 - L1MC4 LINE L1 -147 7895 7713 3 865 361 261 0 0 chr3 36728743 36728812 -122870971 + ID4 SINE ID 2 70 -13 3 865 554 295 145 61 chr3 36728812 36729271 -122870512 - L1MC4 LINE L1 -330 7712 7238 3 865 520 266 0 9 chr3 36730270 36730380 -122869403 + B1F SINE Alu 3 111 -38 3 865 585 273 144 32 chr3 36730843 36731246 -122868537 + RMER20B LTR ERVK 1 472 -44 3 865 315 0 0 0 chr3 36731263 36731298 -122868485 + (CCCCCA)n Simple_repeat Simple_repeat 1 35 0 3 865 507 198 167 28 chr3 36732283 36732441 -122867342 - MTD LTR MaLR -15 404 239 3 865 189 0 0 0 chr3 36732513 36732534 -122867249 + (CA)n Simple_repeat Simple_repeat 1 21 0 3 865 375 271 48 113 chr3 36732764 36732993 -122866790 - Charlie7 DNA MER1_type -588 2024 1811 4 865 181 0 0 65 chr3 36733012 36733043 -122866740 + (CCCCCA)n Simple_repeat Simple_repeat 2 30 0 4 865 22 0 0 0 chr3 36733072 36733094 -122866689 + AT_rich Low_complexity Low_complexity 1 22 0 4 865 731 224 0 81 chr3 36734189 36734349 -122865434 + B1_Mur1 SINE Alu 3 149 0 4 865 755 288 104 30 chr3 36735533 36735830 -122863953 - ORR1E LTR MaLR -6 353 35 4 865 1512 187 164 3 chr3 36735949 36736297 -122863486 - MTC LTR MaLR 0 421 18 4 865 815 202 146 21 chr3 36737454 36737646 -122862137 - B3 SINE B2 0 216 1 4 865 1219 184 156 44 chr3 36737882 36738163 -122861620 - RLTR12A LTR ERVK -3 565 251 4 865 1334 57 6 0 chr3 36738163 36738339 -122861444 + (TCC)n Simple_repeat Simple_repeat 2 178 0 4 865 1219 184 156 44 chr3 36738339 36738352 -122861431 - RLTR12A LTR ERVK -318 250 238 4 865 1260 170 4 6 chr3 36738364 36738595 -122861188 - RLTR12A LTR ERVK -230 298 65 4 865 1410 253 114 46 chr3 36738601 36738759 -122861024 + RLTR20D LTR ERVK 6 148 -420 4 865 513 0 0 0 chr3 36738759 36738816 -122860967 + (GA)n Simple_repeat Simple_repeat 2 58 0 4 865 1410 253 114 46 chr3 36738816 36739183 -122860600 + RLTR20D LTR ERVK 149 567 -1 4 865 225 151 321 0 chr3 36739184 36739237 -122860546 - RLTR12A LTR ERVK -498 70 1 4 865 438 285 151 24 chr3 36739457 36739669 -122860114 + Charlie4 DNA MER1_type 29 267 -1694 4 865 22 0 0 0 chr3 36739794 36739816 -122859967 + GC_rich Low_complexity Low_complexity 1 22 0 4 865 262 317 48 12 chr3 36740230 36740313 -122859470 + L2a LINE L2 3319 3404 -22 4 865 24 67 0 0 chr3 36740348 36740393 -122859390 + AT_rich Low_complexity Low_complexity 1 45 0 4 865 1154 74 0 39 chr3 36740394 36740406 -122859377 - B1_Mus1 SINE Alu 0 148 138 4 865 330 26 0 0 chr3 36740406 36740445 -122859338 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 4 865 1154 74 0 39 chr3 36740445 36740586 -122859197 - B1_Mus1 SINE Alu -11 137 1 4 865 1001 263 14 5 chr3 36740586 36740799 -122858984 - B3 SINE B2 0 216 1 4 865 358 220 43 210 chr3 36740856 36740994 -122858789 - B3A SINE B2 -34 182 68 4 865 340 319 133 33 chr3 36741109 36741430 -122858353 - L1MC LINE L1 -2099 5783 5428 4 865 1449 162 14 0 chr3 36741430 36741652 -122858131 + URR1B DNA MER1_type 1 225 0 4 865 229 171 0 0 chr3 36741876 36741917 -122857866 - MLT2C1 LTR ERVL -1 562 522 4 865 593 305 98 9 chr3 36742106 36742331 -122857452 - MLT2C1 LTR ERVL -51 346 102 4 865 30 27 0 0 chr3 36742436 36742473 -122857310 + AT_rich Low_complexity Low_complexity 1 37 0 4 865 1429 129 0 53 chr3 36742473 36742718 -122857065 - Lx4A LINE L1 0 7058 6827 4 865 242 325 12 24 chr3 36743176 36743258 -122856525 + ID4 SINE ID 2 82 -1 4 865 781 312 110 45 chr3 36743324 36743420 -122856363 + MTD LTR MaLR 20 116 -303 4 865 1568 184 45 63 chr3 36743420 36743798 -122855985 + ORR1D1 LTR MaLR 1 371 -3 4 865 781 312 110 45 chr3 36743798 36744010 -122855773 + MTD LTR MaLR 117 348 -71 4 865 270 241 72 0 chr3 36744213 36744296 -122855487 + L1MC4 LINE L1 6954 7042 -1000 4 865 331 284 138 0 chr3 36744305 36744421 -122855362 + B1F SINE Alu 1 132 -17 4 865 399 21 0 0 chr3 36744489 36744537 -122855246 + (TG)n Simple_repeat Simple_repeat 2 49 0 4 865 511 254 41 27 chr3 36744540 36744686 -122855097 - RSINE1 SINE B4 -17 148 1 4 865 236 305 177 49 chr3 36744690 36745141 -122854642 + L1MC4 LINE L1 7120 7628 -414 4 865 264 250 132 0 chr3 36745145 36745213 -122854570 + B4 SINE B4 8 84 -208 4 865 614 254 22 14 chr3 36745344 36745498 -122854285 + B4 SINE B4 128 283 -9 4 865 1396 91 48 0 chr3 36745705 36745870 -122853913 + B2_Mm2 SINE B2 1 174 -21 4 865 207 0 0 0 chr3 36745870 36745893 -122853890 + (CTAA)n Simple_repeat Simple_repeat 2 24 0 4 865 1396 91 48 0 chr3 36745893 36745913 -122853870 + B2_Mm2 SINE B2 175 194 -1 4 865 41815 10 3 6 chr3 36746141 36752560 -122847223 - L1Md_A LINE L1 0 6582 188 4 865 220 200 0 0 chr3 36752983 36753023 -122846760 + CT-rich Low_complexity Low_complexity 4 43 0 4 865 180 0 0 0 chr3 36753502 36753522 -122846261 + (TTG)n Simple_repeat Simple_repeat 2 21 0 4 865 290 229 0 0 chr3 36753692 36753740 -122846043 - RMER19B LTR ERVK -354 548 501 4 865 1088 225 102 27 chr3 36753751 36754050 -122845733 - RMER19B LTR ERVK -471 431 177 4 865 205 211 42 0 chr3 36754127 36754198 -122845585 + CT-rich Low_complexity Low_complexity 1 74 0 4 865 498 274 43 0 chr3 36754198 36754315 -122845468 - ID_B1 SINE B4 -1 223 102 4 865 268 261 43 0 chr3 36754965 36755034 -122844749 + ID4_ SINE ID 12 83 0 4 865 260 102 20 0 chr3 36755053 36755102 -122844681 + (CA)n Simple_repeat Simple_repeat 1 50 0 4 865 267 265 29 21 chr3 36756537 36756643 -122843140 - L1MB8 LINE L1 -77 6107 6003 4 865 1742 177 47 70 chr3 36756643 36757026 -122842757 - ORR1D1 LTR MaLR 0 374 1 4 865 244 300 16 115 chr3 36757026 36757111 -122842672 - L1MB8 LINE L1 -176 6002 5933 4 865 832 197 21 0 chr3 36757126 36757268 -122842515 - URR1B DNA MER1_type -78 147 3 4 865 1842 161 10 80 chr3 36757414 36757800 -122841983 - RLTR31A_Mm LTR ERVK -225 359 1 4 865 301 252 71 0 chr3 36757804 36757903 -122841880 - L1MB8 LINE L1 -250 5928 5823 4 865 729 43 0 0 chr3 36757903 36757996 -122841787 + (TC)n Simple_repeat Simple_repeat 2 94 0 4 865 936 229 93 45 chr3 36757996 36758243 -122841540 - B4A SINE B4 -7 285 27 4 865 902 269 67 33 chr3 36758270 36758608 -122841175 - L1MB8 LINE L1 -360 5818 5440 4 865 428 295 33 0 chr3 36758703 36758879 -122840904 - L1MB8 LINE L1 -815 5485 5304 4 865 564 206 0 0 chr3 36759081 36759183 -122840600 - B1F SINE Alu -11 138 37 4 865 2511 126 22 29 chr3 36759530 36759641 -122840142 - MTC LTR MaLR -8 413 308 4 865 3413 56 2 2 chr3 36759641 36760037 -122839746 + MTA_Mm LTR MaLR 1 396 0 4 865 2511 126 22 29 chr3 36760037 36760341 -122839442 - MTC LTR MaLR -114 307 1 4 865 305 271 237 15 chr3 36760341 36760476 -122839307 + L1MD2 LINE L1 5978 6142 -217 4 865 22 0 0 0 chr3 36761246 36761268 -122838515 + AT_rich Low_complexity Low_complexity 1 22 0 4 865 247 25 0 48 chr3 36761881 36761923 -122837860 + (CCCCG)n Simple_repeat Simple_repeat 5 44 0 4 865 25 0 0 0 chr3 36762385 36762410 -122837373 + GC_rich Low_complexity Low_complexity 1 25 0 4 865 274 212 76 0 chr3 36763769 36763835 -122835948 - PB1D7 SINE Alu -26 94 24 4 865 215 136 45 0 chr3 36763857 36763901 -122835882 + CT-rich Low_complexity Low_complexity 3 48 0 4 865 1305 199 110 0 chr3 36764236 36764537 -122835246 - ORR1D1 LTR MaLR 0 374 41 4 865 6011 195 70 39 chr3 36764544 36765871 -122833912 - ORR1D1-int LTR MaLR 0 1370 3 4 865 1518 214 52 20 chr3 36765873 36766221 -122833562 - ORR1D1 LTR MaLR 0 374 16 4 865 225 0 0 0 chr3 36766243 36766268 -122833515 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 4 865 1222 57 0 0 chr3 36766295 36766436 -122833347 - B1_Mus2 SINE Alu -6 141 1 4 865 256 94 0 36 chr3 36767389 36767444 -122832339 + (CA)n Simple_repeat Simple_repeat 2 54 0 4 865 1644 184 50 33 chr3 36767910 36768269 -122831514 - ORR1C2 LTR MaLR -17 367 3 4 865 546 178 30 0 chr3 36768608 36768709 -122831074 - B1_Mur4 SINE Alu 0 150 47 4 865 1058 276 42 18 chr3 36771222 36771506 -122828277 - B4A SINE B4 0 292 2 4 865 180 0 0 0 chr3 36771703 36771723 -122828060 + (CAGGG)n Simple_repeat Simple_repeat 3 22 0 4 865 489 84 0 0 chr3 36772237 36772308 -122827475 + L1_Mus1 LINE L1 6497 6567 0 4 865 301 276 15 52 chr3 36772536 36772670 -122827113 + L1_Mur3 LINE L1 1276 1404 -4476 4 865 28 0 0 0 chr3 36772951 36772979 -122826804 + AT_rich Low_complexity Low_complexity 1 28 0 4 865 24 32 0 0 chr3 36773266 36773297 -122826486 + AT_rich Low_complexity Low_complexity 1 31 0 4 865 1506 75 5 5 chr3 36774031 36774220 -122825563 + B2_Mm2 SINE B2 1 189 -6 4 865 24 32 0 0 chr3 36775188 36775219 -122824564 + AT_rich Low_complexity Low_complexity 1 31 0 4 865 432 250 25 74 chr3 36775408 36775529 -122824254 + ID_B1 SINE B4 79 193 -31 4 865 2004 22 0 0 chr3 36775529 36775755 -122824028 - L1Md_A LINE L1 -78 5805 5580 4 865 6734 40 1 0 chr3 36775755 36776512 -122823271 + L1Md_A LINE L1 5825 6582 0 4 865 422 283 20 20 chr3 36776951 36777052 -122822731 - PB1 SINE Alu -21 106 6 4 865 340 263 86 109 chr3 36777111 36777169 -122822614 - L1M2 LINE L1 -773 5370 5327 4 865 7168 83 40 18 chr3 36777169 36778149 -122821634 - Lx3_Mus LINE L1 0 7009 6009 4 865 391 267 99 84 chr3 36778149 36778472 -122821311 - L1M2 LINE L1 -817 5326 4999 4 865 739 277 120 37 chr3 36778573 36778680 -122821103 - L1M2 LINE L1 -1416 4730 4621 4 865 1803 170 52 11 chr3 36778680 36779043 -122820740 - ORR1C1 LTR MaLR 0 378 1 4 865 1112 242 113 35 chr3 36779043 36779605 -122820178 - L1M2 LINE L1 -1526 4620 4003 4 865 286 322 16 32 chr3 36779863 36779988 -122819795 - L4 LINE RTE -698 1331 1209 4 865 357 125 0 0 chr3 36780200 36780256 -122819527 + (GAAA)n Simple_repeat Simple_repeat 4 59 0 4 865 2065 195 171 45 chr3 36780635 36781162 -122818621 - RMER19B LTR ERVK -2 900 308 4 865 26 30 0 0 chr3 36781750 36781783 -122818000 + AT_rich Low_complexity Low_complexity 1 33 0 4 865 22 35 0 0 chr3 36782150 36782179 -122817604 + AT_rich Low_complexity Low_complexity 1 29 0 4 865 289 178 0 40 chr3 36782253 36782312 -122817471 + T-rich Low_complexity Low_complexity 18 74 0 4 865 1186 61 0 0 chr3 36782312 36782459 -122817324 - B1_Mus2 SINE Alu 0 147 1 4 865 289 178 0 40 chr3 36782459 36782475 -122817308 + T-rich Low_complexity Low_complexity 2 17 0 4 865 272 250 177 32 chr3 36782482 36782606 -122817177 - L2a LINE L2 -25 3401 3260 4 865 255 332 196 8 chr3 36782849 36783104 -122816679 - L2a LINE L2 -491 2928 2626 4 865 374 182 52 0 chr3 36784831 36784908 -122814875 - ID4_ SINE ID -1 82 2 4 865 247 250 15 15 chr3 36785473 36785538 -122814245 + L1MA7 LINE L1 5877 5941 -350 4 865 249 209 101 29 chr3 36785556 36785625 -122814158 + B1F1 SINE Alu 76 149 0 4 865 22 0 0 0 chr3 36787452 36787474 -122812309 + AT_rich Low_complexity Low_complexity 1 22 0 4 865 26 50 0 0 chr3 36787788 36787828 -122811955 + AT_rich Low_complexity Low_complexity 1 40 0 4 865 354 330 66 0 chr3 36787850 36787956 -122811827 + ID_B1 SINE B4 99 211 -13 4 865 195 42 0 0 chr3 36787957 36787981 -122811802 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 4 865 21 0 0 0 chr3 36788347 36788368 -122811415 + AT_rich Low_complexity Low_complexity 1 21 0 4 865 1028 139 60 27 chr3 36789300 36789485 -122810298 - MTB_Mm LTR MaLR -216 191 1 4 865 277 204 90 74 chr3 36789546 36789668 -122810115 + Charlie1b DNA MER1_type 399 522 -1 4 865 24 32 0 0 chr3 36789942 36789973 -122809810 + AT_rich Low_complexity Low_complexity 1 31 0 4 865 494 263 165 13 chr3 36789984 36790142 -122809641 - B3A SINE B2 -16 182 1 4 865 405 301 50 31 chr3 36790461 36790622 -122809161 - MLT1C LTR MaLR -1 466 303 5 865 236 314 47 0 chr3 36790649 36790735 -122809048 - MLT1C LTR MaLR -300 90 1 5 865 282 264 42 0 chr3 36790928 36791000 -122808783 + PB1D9 SINE Alu 28 102 -18 5 865 207 100 0 0 chr3 36791069 36791099 -122808684 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 5 865 322 279 81 0 chr3 36791152 36791238 -122808545 - PB1 SINE Alu -8 119 27 5 865 1967 113 9 30 chr3 36791521 36791857 -122807926 - ORR1A4 LTR MaLR 0 329 1 5 865 3996 62 16 0 chr3 36791981 36792494 -122807289 - L1_Mus1 LINE L1 -459 6108 5588 5 865 730 146 134 35 chr3 36792812 36792983 -122806800 - B2_Mm2 SINE B2 -7 188 1 5 865 533 259 22 0 chr3 36792993 36793128 -122806655 - B1_Mm SINE Alu -8 139 2 5 865 710 254 81 0 chr3 36793540 36793737 -122806046 + B3 SINE B2 4 216 0 5 865 188 296 105 67 chr3 36793788 36793893 -122805890 - MIRb SINE MIR -64 204 96 5 865 344 271 55 14 chr3 36794938 36795084 -122804699 - L1MA6 LINE L1 -5 6295 6144 5 865 367 343 14 29 chr3 36795101 36795239 -122804544 - B1F SINE Alu -7 142 7 5 865 225 274 147 0 chr3 36795312 36795407 -122804376 - L1MA6 LINE L1 -254 6046 5938 5 865 930 278 11 38 chr3 36795453 36795823 -122803960 - L1MA6 LINE L1 -349 5951 5592 5 865 488 291 110 36 chr3 36796107 36796414 -122803369 - MTD LTR MaLR -53 366 13 5 865 242 160 0 20 chr3 36796421 36796472 -122803311 + GA-rich Low_complexity Low_complexity 3 52 0 5 865 4881 75 34 4 chr3 36796473 36797172 -122802611 - MusHAL1 LINE L1 -726 1986 1267 5 865 234 105 0 0 chr3 36797196 36797234 -122802549 + (TTTTA)n Simple_repeat Simple_repeat 3 40 0 5 865 309 234 227 81 chr3 36797658 36797830 -122801953 + B3 SINE B2 1 197 -19 5 865 1913 155 3 22 chr3 36797854 36798177 -122801606 - MTC LTR MaLR 0 421 105 5 865 40494 13 1 6 chr3 36798190 36804358 -122795425 - L1Md_A LINE L1 0 6582 453 5 865 626 118 11 0 chr3 36804358 36804451 -122795332 - MTC LTR MaLR -323 98 5 5 865 381 246 74 58 chr3 36804512 36804633 -122795150 + RSINE1 SINE B4 15 137 -28 5 865 562 336 86 0 chr3 36805138 36805382 -122794401 + MER2 DNA MER2_type 80 344 -1 5 865 243 0 0 0 chr3 36806178 36806205 -122793578 + (CAA)n Simple_repeat Simple_repeat 2 28 0 5 865 1614 281 41 25 chr3 36807312 36807895 -122791888 - Lx6 LINE L1 -26 7434 6469 5 865 499 231 42 8 chr3 36807884 36808002 -122791781 - Lx6 LINE L1 -687 6363 6242 5 865 3315 64 0 2 chr3 36808007 36808444 -122791339 - L1_Mm LINE L1 -1200 4683 4248 5 865 3143 200 46 22 chr3 36808443 36809458 -122790325 - Lx6 LINE L1 -1241 6219 5163 5 865 205 186 0 0 chr3 36809519 36809562 -122790221 + T-rich Low_complexity Low_complexity 1 43 0 5 865 3270 181 53 16 chr3 36809571 36810288 -122789495 - Lx2B LINE L1 -13 6987 6135 5 865 5733 77 63 6 chr3 36810787 36811607 -122788176 - Lx LINE L1 -5 6649 5783 5 865 22 0 0 0 chr3 36811736 36811758 -122788025 + AT_rich Low_complexity Low_complexity 1 22 0 5 865 3891 45 1 9 chr3 36811962 36812508 -122787275 - L1Md_A LINE L1 -5519 1208 610 5 865 3590 50 35 14 chr3 36812804 36813290 -122786493 - LTRIS2 LTR ERV1 0 564 69 5 865 22 88 0 0 chr3 36813509 36813566 -122786217 + AT_rich Low_complexity Low_complexity 1 57 0 5 865 426 321 149 9 chr3 36814366 36814580 -122785203 - MER2 DNA MER2_type -76 269 26 5 865 229 143 0 51 chr3 36814716 36814775 -122785008 + C-rich Low_complexity Low_complexity 6 61 0 5 865 472 292 60 78 chr3 36815628 36815795 -122783988 + RSINE1 SINE B4 2 165 0 5 865 30 0 0 0 chr3 36815807 36815837 -122783946 + AT_rich Low_complexity Low_complexity 1 30 0 5 865 323 47 0 0 chr3 36815928 36815971 -122783812 - B1_Mur4 SINE Alu 0 150 108 5 865 240 209 28 142 chr3 36815977 36816083 -122783700 + L2a LINE L2 3333 3426 0 5 865 458 191 88 26 chr3 36816159 36816272 -122783511 - PB1D9 SINE Alu 0 120 1 5 865 288 301 71 57 chr3 36817988 36818129 -122781654 - MIR SINE MIR 0 268 119 5 865 212 342 114 0 chr3 36818136 36818215 -122781568 + B1F2 SINE Alu 4 91 -58 5 865 226 333 103 17 chr3 36818232 36818348 -122781435 - MIR SINE MIR -136 126 1 5 865 200 364 10 39 chr3 36819363 36819466 -122780317 - MIRb SINE MIR -16 252 153 5 865 221 229 0 32 chr3 36820628 36820691 -122779092 + A-rich Low_complexity Low_complexity 5 65 0 5 865 4319 186 23 2 chr3 36820703 36821559 -122778224 - L1_Mur3 LINE L1 -117 5763 4890 5 865 21 36 0 0 chr3 36821620 36821648 -122778135 + AT_rich Low_complexity Low_complexity 1 28 0 5 865 3338 48 0 9 chr3 36821693 36822116 -122777667 - L1Md_F2 LINE L1 0 6582 6164 5 865 21 36 0 0 chr3 36822393 36822421 -122777362 + AT_rich Low_complexity Low_complexity 1 28 0 5 865 335 273 128 32 chr3 36822776 36822901 -122776882 - RMER15 LTR ERVL -14 561 425 5 865 472 289 96 0 chr3 36823259 36823394 -122776389 - MTEb LTR MaLR -231 148 1 5 865 21 0 0 0 chr3 36824250 36824271 -122775512 + AT_rich Low_complexity Low_complexity 1 21 0 5 865 21 0 0 0 chr3 36824506 36824527 -122775256 + AT_rich Low_complexity Low_complexity 1 21 0 5 865 230 0 0 32 chr3 36824797 36824828 -122774955 + (TTTG)n Simple_repeat Simple_repeat 3 32 0 5 865 574 232 32 0 chr3 36824829 36824954 -122774829 - B1F SINE Alu -8 141 13 5 865 2869 218 156 18 chr3 36825001 36825826 -122773957 - Lx9 LINE L1 -40 7604 6666 5 865 374 300 114 37 chr3 36826069 36826299 -122773484 + B4A SINE B4 1 285 -7 5 865 21 0 0 0 chr3 36826916 36826937 -122772846 + AT_rich Low_complexity Low_complexity 1 21 0 5 865 8411 133 47 4 chr3 36827959 36829466 -122770317 - Lx4A LINE L1 -2 7056 5466 5 865 347 266 44 0 chr3 36830756 36830862 -122768921 - B1F SINE Alu 0 117 10 5 108 4743 261 62 14 chr3 36830907 36832170 -122767613 - Lx6 LINE L1 -1 7459 6136 5 866 4829 74 57 0 chr3 36832447 36833120 -122766663 - L1_Mus2 LINE L1 0 6566 5856 5 866 354 257 83 56 chr3 36833961 36834105 -122765678 - MLT1B LTR MaLR -2 388 241 5 866 615 332 88 4 chr3 36834095 36834367 -122765416 - MLT1C LTR MaLR -164 303 9 5 866 382 244 12 60 chr3 36835235 36835318 -122764465 - ID SINE ID -144 80 2 5 866 1255 189 71 4 chr3 36836157 36836396 -122763387 + Lx5 LINE L1 6796 7050 0 5 866 450 0 0 0 chr3 36837786 36837836 -122761947 + (TAGA)n Simple_repeat Simple_repeat 4 53 0 5 866 1141 82 0 0 chr3 36838535 36838681 -122761102 + B1_Mus2 SINE Alu 2 147 0 5 866 195 0 86 0 chr3 36838681 36838716 -122761067 + (CAAAAA)n Simple_repeat Simple_repeat 5 42 0 5 866 370 312 18 36 chr3 36838807 36838973 -122760810 - RSINE1 SINE B4 0 165 3 5 866 247 324 0 14 chr3 36840200 36840272 -122759511 + RSINE1 SINE B4 79 149 -16 5 866 718 107 16 8 chr3 36840286 36840409 -122759374 + (TCCC)n Simple_repeat Simple_repeat 3 126 0 5 866 246 289 24 12 chr3 36840644 36840728 -122759055 - RSINE1 SINE B4 -26 139 55 5 866 421 307 16 8 chr3 36840814 36840942 -122758841 - RSINE1 SINE B4 -29 136 8 5 866 216 0 0 0 chr3 36840982 36841006 -122758777 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 5 866 2428 90 81 18 chr3 36842451 36842847 -122756936 - BGLII LTR ERVK 0 421 1 5 866 238 333 29 0 chr3 36843759 36843828 -122755955 - PB1D10 SINE Alu -1 116 46 5 866 217 214 137 41 chr3 36843844 36843917 -122755866 - MIRc SINE MIR -115 153 74 5 866 228 259 19 0 chr3 36844879 36844933 -122754850 - ID4 SINE ID -11 72 18 5 866 775 141 251 11 chr3 36846095 36846274 -122753509 - URR1A DNA MER1_type -4 222 1 5 866 25 0 0 0 chr3 36847931 36847956 -122751827 + AT_rich Low_complexity Low_complexity 1 25 0 5 866 992 105 7 0 chr3 36848148 36848300 -122751483 + (TTTC)n Simple_repeat Simple_repeat 2 154 0 5 866 409 261 11 0 chr3 36848312 36848400 -122751383 - PB1 SINE Alu -20 107 19 5 866 556 258 26 19 chr3 36849566 36849720 -122750063 + Lx6 LINE L1 7280 7434 -26 5 866 1375 263 179 12 chr3 36849833 36850618 -122749165 + L1MA6 LINE L1 5126 6051 -249 5 866 33 25 0 0 chr3 36850983 36851023 -122748760 + AT_rich Low_complexity Low_complexity 1 40 0 5 866 4256 62 0 28 chr3 36851399 36851975 -122747808 - L1Md_F2 LINE L1 -1 6581 6022 5 866 432 0 0 0 chr3 36852042 36852090 -122747693 + (TG)n Simple_repeat Simple_repeat 2 49 0 5 866 417 357 0 0 chr3 36852093 36852191 -122747592 - B3A SINE B2 -28 170 73 5 866 213 39 0 0 chr3 36852489 36852515 -122747268 + (TAA)n Simple_repeat Simple_repeat 2 27 0 5 866 387 271 61 35 chr3 36853473 36853702 -122746081 - Lx7 LINE L1 0 7696 7462 5 866 818 239 0 16 chr3 36853702 36853889 -122745894 - Lx7 LINE L1 -343 7353 7170 5 866 1839 238 138 20 chr3 36853901 36854458 -122745325 - Lx7 LINE L1 -584 7112 6490 5 866 557 275 164 12 chr3 36854481 36854731 -122745052 - Lx8 LINE L1 -343 7130 6843 5 866 228 295 124 11 chr3 36854758 36854847 -122744936 + Lx8 LINE L1 7231 7329 -144 5 866 1139 82 0 0 chr3 36854861 36855008 -122744775 - B1_Mus2 SINE Alu 0 147 1 5 866 803 289 46 19 chr3 36855141 36855421 -122744362 - Lx8 LINE L1 -852 6844 6559 5 866 1289 150 13 14 chr3 36856331 36856610 -122743173 - MTC LTR MaLR -8 413 21 5 866 22 0 0 0 chr3 36857307 36857329 -122742454 + AT_rich Low_complexity Low_complexity 1 22 0 5 866 24 53 0 0 chr3 36858794 36858832 -122740951 + AT_rich Low_complexity Low_complexity 1 38 0 5 866 1226 27 0 0 chr3 36858865 36859012 -122740771 - B1_Mus2 SINE Alu 0 147 1 5 866 22 0 0 0 chr3 36859541 36859563 -122740220 + AT_rich Low_complexity Low_complexity 1 22 0 5 866 7467 100 16 5 chr3 36859574 36860869 -122738914 - L1_Mus4 LINE L1 -5 6631 5321 5 866 3817 135 5 2 chr3 36860867 36861455 -122738328 - L1VL4 LINE L1 -5665 637 48 5 866 362 217 0 27 chr3 36861473 36861561 -122738222 - RSINE1 SINE B4 -206 86 1 5 866 517 329 0 44 chr3 36861615 36861774 -122738009 + RSINE1 SINE B4 14 165 0 5 866 466 272 0 0 chr3 36861965 36862068 -122737715 - B3 SINE B2 0 216 114 6 866 271 271 0 79 chr3 36862522 36862598 -122737185 - ID4 SINE ID -3 80 11 6 866 1893 220 34 0 chr3 36862653 36863007 -122736776 - Lx5 LINE L1 -3 7047 6682 6 866 250 293 48 96 chr3 36863007 36863090 -122736693 - RSINE1 SINE B4 -85 80 2 6 866 442 264 0 45 chr3 36863124 36863235 -122736548 + PB1 SINE Alu 22 127 0 6 866 2234 164 12 9 chr3 36863235 36863655 -122736128 + L1_Mur2 LINE L1 5114 5534 -343 6 866 615 48 0 0 chr3 36864352 36864435 -122735348 + (TG)n Simple_repeat Simple_repeat 2 84 0 6 866 235 146 24 0 chr3 36865344 36865385 -122734398 - HAL1 LINE L1 -945 1562 1521 6 866 298 218 23 103 chr3 36865804 36865891 -122733892 - ORR1D1 LTR MaLR -280 94 15 6 866 2951 77 14 9 chr3 36866707 36867126 -122732657 - BGLII LTR ERVK 0 421 1 6 866 1003 204 25 46 chr3 36867130 36867406 -122732377 - RLTR31B_Mm LTR ERVK 0 557 327 6 866 257 337 0 11 chr3 36868742 36868832 -122730951 + MIR SINE MIR 114 202 -60 6 866 1426 71 16 0 chr3 36868996 36869180 -122730603 + B2_Mm2 SINE B2 1 187 -8 6 866 22 35 0 0 chr3 36869298 36869327 -122730456 + AT_rich Low_complexity Low_complexity 1 29 0 6 866 28 29 0 0 chr3 36869376 36869411 -122730372 + AT_rich Low_complexity Low_complexity 1 35 0 6 866 753 253 12 31 chr3 36869485 36869648 -122730135 - RMER15 LTR ERVL 0 575 416 6 866 259 95 0 23 chr3 36869632 36869675 -122730108 - RMER15 LTR ERVL -531 44 3 6 866 1672 190 55 28 chr3 36869965 36870328 -122729455 - ORR1D1 LTR MaLR 0 374 2 6 866 494 288 153 30 chr3 36870672 36871002 -122728781 - MTE2a LTR MaLR -14 365 10 6 866 448 279 56 21 chr3 36871454 36871597 -122728186 - B1F1 SINE Alu 0 149 2 6 866 1063 214 24 5 chr3 36872762 36872969 -122726814 + B3 SINE B2 6 216 0 6 866 202 216 0 0 chr3 36874347 36874398 -122725385 + (TTTG)n Simple_repeat Simple_repeat 3 53 0 6 866 208 135 0 0 chr3 36874353 36874390 -122725393 + (T)n Simple_repeat Simple_repeat 1 37 0 6 866 676 33 0 0 chr3 36874862 36874953 -122724830 + L1Md_T LINE L1 6492 6582 0 6 866 634 333 45 32 chr3 36875542 36875762 -122724021 - Lx5 LINE L1 -24 7026 6804 6 866 6508 93 26 48 chr3 36875760 36876743 -122723040 - Lx3A LINE L1 -35 6946 5961 6 866 252 0 0 0 chr3 36876743 36876771 -122723012 + (GTTTG)n Simple_repeat Simple_repeat 2 29 0 6 866 6508 93 26 48 chr3 36876771 36876796 -122722987 - Lx3A LINE L1 -1021 5960 5960 6 866 748 118 151 0 chr3 36876796 36876915 -122722868 - B1_Mus1 SINE Alu -11 137 1 6 866 6508 93 26 48 chr3 36876915 36876960 -122722823 - Lx3A LINE L1 -1021 5960 5916 6 866 250 275 0 28 chr3 36876981 36877040 -122722743 + RLTR31B_Mm LTR ERVK 474 530 -27 6 866 180 0 0 0 chr3 36877040 36877060 -122722723 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 6 866 250 275 0 28 chr3 36877060 36877071 -122722712 + RLTR31B_Mm LTR ERVK 531 541 -16 6 866 15590 123 80 58 chr3 36877078 36878006 -122721777 - L1_Mur1 LINE L1 -1511 4366 3380 6 866 2368 177 29 36 chr3 36878006 36878500 -122721283 - RLTR1D LTR ERV1 0 605 115 6 866 15590 123 80 58 chr3 36878500 36881644 -122718139 - L1_Mur1 LINE L1 -1511 3379 34 6 866 647 175 27 38 chr3 36881677 36881738 -122718045 - L1_Mur2 LINE L1 -3744 2133 2073 6 866 742 54 31 8 chr3 36881738 36881868 -122717915 + (TGG)n Simple_repeat Simple_repeat 1 133 0 6 866 647 175 27 38 chr3 36881868 36881990 -122717793 - L1_Mur2 LINE L1 -3805 2072 1952 6 866 31 0 0 0 chr3 36882481 36882512 -122717271 + AT_rich Low_complexity Low_complexity 1 31 0 6 866 22 56 0 0 chr3 36882555 36882591 -122717192 + AT_rich Low_complexity Low_complexity 1 36 0 6 866 576 298 70 42 chr3 36882821 36883105 -122716678 - B4A SINE B4 0 292 1 6 866 184 104 43 29 chr3 36883419 36883488 -122716295 + T-rich Low_complexity Low_complexity 1 70 0 6 866 24 53 0 0 chr3 36883571 36883609 -122716174 + AT_rich Low_complexity Low_complexity 1 38 0 6 866 450 318 34 7 chr3 36883632 36883781 -122716002 - RSINE1 SINE B4 -10 155 3 6 866 32 0 0 0 chr3 36883781 36883813 -122715970 + AT_rich Low_complexity Low_complexity 1 32 0 6 866 188 279 113 19 chr3 36884407 36884513 -122715270 + L2c LINE L2 3148 3263 -124 6 866 369 0 0 0 chr3 36884677 36884718 -122715065 + (TG)n Simple_repeat Simple_repeat 2 42 0 6 866 600 271 14 20 chr3 36889314 36889461 -122710322 + B1F SINE Alu 1 146 -3 6 866 3379 32 5 0 chr3 36889898 36890300 -122709483 - L1Md_T LINE L1 -1 6581 6178 6 866 258 344 90 22 chr3 36890514 36890648 -122709135 - MIRb SINE MIR -15 253 111 6 866 22 35 0 0 chr3 36890881 36890910 -122708873 + AT_rich Low_complexity Low_complexity 1 29 0 6 866 1384 57 11 0 chr3 36890971 36891147 -122708636 + B2_Mm1t SINE B2 2 179 -14 6 866 27 23 0 22 chr3 36891147 36891162 -122708621 + AT_rich Low_complexity Low_complexity 1 15 0 6 866 1178 68 0 0 chr3 36891162 36891309 -122708474 - B1_Mus2 SINE Alu 0 147 1 6 866 27 23 0 22 chr3 36891309 36891338 -122708445 + AT_rich Low_complexity Low_complexity 1 29 0 6 866 25 0 0 0 chr3 36891862 36891887 -122707896 + AT_rich Low_complexity Low_complexity 1 25 0 6 866 27 0 0 0 chr3 36892114 36892141 -122707642 + AT_rich Low_complexity Low_complexity 1 27 0 6 866 830 143 0 0 chr3 36892885 36893011 -122706772 - L1_Mm LINE L1 -1250 4633 4508 6 866 330 127 62 16 chr3 36894414 36894478 -122705305 - HAL1-3A_ME LINE L1 -816 2042 1976 6 866 861 195 2 0 chr3 36894478 36894970 -122704813 + (TG)n Simple_repeat Simple_repeat 1 493 0 6 866 46 33 0 0 chr3 36895605 36895665 -122704118 + AT_rich Low_complexity Low_complexity 1 60 0 6 866 269 279 53 43 chr3 36895665 36895852 -122703931 - L1M5 LINE L1 -2112 4034 3846 6 866 3631 70 6 0 chr3 36898320 36898792 -122700991 - L1_Mus3 LINE L1 0 6638 6164 6 866 1053 106 56 91 chr3 36900427 36900625 -122699158 + B2_Mm2 SINE B2 2 192 -3 6 866 954 90 0 0 chr3 36901781 36901915 -122697868 + (TCCCC)n Simple_repeat Simple_repeat 3 136 0 6 866 610 219 14 55 chr3 36901915 36902060 -122697723 - B1_Mur1 SINE Alu -8 141 3 6 866 201 195 0 0 chr3 36902084 36902125 -122697658 + (TAA)n Simple_repeat Simple_repeat 2 42 0 6 866 21 0 0 0 chr3 36903587 36903608 -122696175 + AT_rich Low_complexity Low_complexity 1 21 0 6 866 763 76 17 17 chr3 36903977 36904097 -122695686 + (TATG)n Simple_repeat Simple_repeat 2 121 0 6 866 226 315 107 36 chr3 36904325 36904437 -122695346 - L2c LINE L2 0 3387 3268 6 866 637 281 142 56 chr3 36905194 36905533 -122694250 - ORR1D2 LTR MaLR -2 368 1 6 866 183 184 0 0 chr3 36905680 36905718 -122694065 + T-rich Low_complexity Low_complexity 2 39 0 6 866 23 0 0 0 chr3 36906423 36906446 -122693337 + AT_rich Low_complexity Low_complexity 1 23 0 6 866 1087 211 5 9 chr3 36907047 36907257 -122692526 + B3 SINE B2 2 210 -6 6 866 617 276 14 56 chr3 36908887 36909102 -122690681 + ID_B1 SINE B4 2 207 -17 6 866 273 98 0 0 chr3 36909477 36909518 -122690265 + (TG)n Simple_repeat Simple_repeat 2 42 0 6 866 353 271 90 68 chr3 36910938 36911160 -122688623 + L1MB8 LINE L1 5941 6167 -11 6 866 1373 77 38 0 chr3 36912356 36912539 -122687244 + B2_Mm2 SINE B2 1 190 -5 6 866 231 61 0 0 chr3 36912592 36912625 -122687158 + (TC)n Simple_repeat Simple_repeat 2 34 0 6 866 468 0 0 0 chr3 36913486 36913538 -122686245 + (TA)n Simple_repeat Simple_repeat 2 53 0 6 866 3662 92 19 2 chr3 36913552 36914074 -122685709 - Lx3_Mus LINE L1 -30 6979 6449 6 866 1299 232 83 26 chr3 36914082 36914560 -122685223 - L1MCa LINE L1 -2882 3140 2648 6 866 930 220 75 10 chr3 36914555 36914732 -122685051 - L1MCa LINE L1 -1477 4841 4783 6 866 5181 94 66 14 chr3 36914732 36915515 -122684268 - Lx LINE L1 -6 6648 5825 6 866 2103 115 6 18 chr3 36915515 36915843 -122683940 - L1_Mur1 LINE L1 -1296 4581 4258 6 866 3664 153 28 20 chr3 36915845 36916480 -122683303 - RLTR26 LTR ERVK -2 640 1 6 866 11965 143 12 43 chr3 36916480 36918723 -122681060 - L1_Mur1 LINE L1 -1614 4272 2100 6 866 676 274 41 111 chr3 36918804 36919075 -122680708 + MER2 DNA MER2_type 11 262 -83 6 866 31 0 0 0 chr3 36919100 36919131 -122680652 + AT_rich Low_complexity Low_complexity 1 31 0 6 866 185 94 0 30 chr3 36919214 36919247 -122680536 + (TTCTC)n Simple_repeat Simple_repeat 4 35 0 6 866 241 171 0 0 chr3 36919263 36919304 -122680479 - RMER1B Other Other -428 638 598 6 866 1319 258 88 69 chr3 36919315 36920224 -122679559 - RMER1B Other Other -549 517 14 6 866 712 269 40 63 chr3 36920823 36921045 -122678738 + ID_B1 SINE B4 8 224 0 6 866 261 297 120 13 chr3 36922468 36922543 -122677240 + PB1 SINE Alu 1 83 -66 6 866 588 258 15 0 chr3 36922554 36922686 -122677097 - ID_B1 SINE B4 -5 219 86 6 866 820 231 56 15 chr3 36923163 36923361 -122676422 + B3 SINE B2 1 206 -10 6 866 416 262 0 34 chr3 36923513 36923602 -122676181 - ID2 SINE ID -62 90 5 6 866 444 326 78 0 chr3 36923640 36923781 -122676002 + RSINE1 SINE B4 3 154 -11 6 866 330 26 0 0 chr3 36923813 36923852 -122675931 + (TTAA)n Simple_repeat Simple_repeat 1 39 0 6 866 865 170 0 14 chr3 36924315 36924458 -122675325 + B1_Mus1 SINE Alu 8 148 0 6 866 334 320 32 70 chr3 36924317 36924475 -122675308 + B4A SINE B4 94 245 -47 6 866 21 0 0 0 chr3 36924982 36925003 -122674780 + AT_rich Low_complexity Low_complexity 1 21 0 6 866 583 293 6 13 chr3 36925336 36925495 -122674288 + ID_B1 SINE B4 69 222 -2 6 866 785 199 40 7 chr3 36926354 36926506 -122673277 - B3 SINE B2 -56 160 4 6 866 651 271 101 22 chr3 36927846 36928114 -122671669 - B4 SINE B4 -2 290 2 6 866 250 220 100 0 chr3 36928517 36928567 -122671216 + B1F2 SINE Alu 1 55 -94 6 866 756 0 0 0 chr3 36928567 36928651 -122671132 + (GGAA)n Simple_repeat Simple_repeat 1 84 0 7 866 451 373 145 0 chr3 36930088 36930370 -122669413 - MLT1F LTR MaLR -135 413 91 7 866 498 108 0 0 chr3 36930438 36930512 -122669271 + (CA)n Simple_repeat Simple_repeat 2 75 0 7 866 1720 102 4 0 chr3 36931531 36931777 -122668006 + Lx3_Mus LINE L1 6763 7009 0 7 866 22 0 0 0 chr3 36932350 36932372 -122667411 + AT_rich Low_complexity Low_complexity 1 22 0 7 866 23 33 0 0 chr3 36932685 36932715 -122667068 + AT_rich Low_complexity Low_complexity 1 30 0 7 866 274 272 126 32 chr3 36933146 36933241 -122666542 - B1F SINE Alu -6 143 40 7 866 212 224 252 10 chr3 36937689 36937788 -122661995 - L2a LINE L2 0 3426 3304 7 866 334 292 41 16 chr3 36939691 36939813 -122659970 + PB1 SINE Alu 1 125 -2 7 866 491 295 125 28 chr3 36941179 36941500 -122658283 - L2a LINE L2 -18 3408 3057 7 866 332 233 21 85 chr3 36941564 36941658 -122658125 + PB1D10 SINE Alu 22 109 -8 7 866 224 225 0 0 chr3 36941676 36941716 -122658067 + ID4 SINE ID 5 44 -39 7 866 183 297 0 30 chr3 36941913 36941979 -122657804 - L2a LINE L2 -614 2805 2742 7 866 462 207 261 0 chr3 36942085 36942196 -122657587 - B1_Mm SINE Alu -4 143 4 7 866 334 286 26 0 chr3 36942939 36943016 -122656767 - ID4 SINE ID -2 81 3 7 866 283 222 0 16 chr3 36943049 36943113 -122656670 - MER5A1 DNA MER1_type -102 64 2 7 866 285 208 27 14 chr3 36943850 36943923 -122655860 + (TG)n Simple_repeat Simple_repeat 1 74 0 7 866 275 275 49 24 chr3 36943927 36944009 -122655774 - RSINE1 SINE B4 0 165 82 7 866 468 337 21 75 chr3 36944017 36944203 -122655580 - B4A SINE B4 -116 176 1 7 866 732 275 7 7 chr3 36944253 36944396 -122655387 - RSINE1 SINE B4 -21 144 2 7 866 307 202 76 0 chr3 36944864 36944943 -122654840 - PB1D9 SINE Alu -1 119 35 7 866 30 77 0 0 chr3 36945590 36945655 -122654128 + AT_rich Low_complexity Low_complexity 1 65 0 7 866 612 250 27 43 chr3 36946615 36946799 -122652984 - RLTR11B LTR ERVK -272 181 1 7 866 342 324 64 35 chr3 36947765 36947906 -122651877 - ID_B1 SINE B4 -10 214 70 7 866 292 320 117 29 chr3 36948418 36948521 -122651262 + PB1D10 SINE Alu 2 113 -4 7 866 270 295 50 25 chr3 36948526 36948606 -122651177 + ID SINE ID 1 82 -142 7 866 26 0 0 0 chr3 36949657 36949683 -122650100 + AT_rich Low_complexity Low_complexity 1 26 0 7 866 1018 246 99 36 chr3 36949898 36950231 -122649552 - ORR1E LTR MaLR -5 354 1 7 866 1812 252 147 19 chr3 36950231 36950739 -122649044 - MTE-int LTR MaLR -53 1527 953 7 866 719 233 41 67 chr3 36950800 36951067 -122648716 - RLTR11B LTR ERVK -191 262 3 7 866 1232 41 0 0 chr3 36952426 36952573 -122647210 - B1_Mus1 SINE Alu 0 148 2 7 866 4811 126 80 6 chr3 36953456 36954299 -122645484 - MurERV4-int LTR ERVK -2313 2947 2043 7 866 2070 193 112 14 chr3 36954392 36954911 -122644872 - MurERV4-int LTR ERVK -3753 1507 938 7 866 1976 138 68 122 chr3 36954911 36955355 -122644428 - RLTR23 LTR ERV1 -1 429 10 7 866 1204 301 73 77 chr3 36955359 36956238 -122643545 - MurERV4-int LTR ERVK -4904 876 2 7 866 392 184 69 39 chr3 36956246 36956348 -122643435 - RMER4B LTR ERVK -16 569 465 7 866 2319 64 22 0 chr3 36956351 36956663 -122643120 + ORR1A2 LTR MaLR 1 319 -8 7 866 1066 195 235 25 chr3 36956663 36957016 -122642767 - RMER4B LTR ERVK -158 427 1 7 866 3205 166 128 114 chr3 36957820 36958651 -122641132 + RMER21B LTR ERV1 1 842 0 7 866 391 275 42 42 chr3 36959349 36959493 -122640290 + RLTR14 LTR ERV1 225 368 -14 7 866 2193 111 13 0 chr3 36959565 36959880 -122639903 - ORR1A2 LTR MaLR -8 319 1 7 866 932 229 70 100 chr3 36960078 36960437 -122639346 - RMER6D LTR ERVK 0 720 373 7 866 300 282 76 8 chr3 36960442 36960560 -122639223 + L1MD3 LINE L1 7681 7806 -189 7 866 516 16 0 0 chr3 36960695 36960756 -122639027 + (TG)n Simple_repeat Simple_repeat 2 62 0 7 866 280 241 19 0 chr3 36960797 36960851 -122638932 - RSINE1 SINE B4 -97 68 14 7 866 2617 83 99 3 chr3 36960979 36961364 -122638419 - BGLII_Mus LTR ERVK 0 422 1 7 866 518 340 96 35 chr3 36961428 36961833 -122637950 - Charlie2b DNA MER1_type -573 2209 1780 7 867 182 182 0 0 chr3 36963724 36963757 -122636026 + MIR SINE MIR 109 141 -67 7 867 713 254 110 34 chr3 36966509 36966953 -122632830 - L1M4 LINE L1 -763 5383 4906 7 867 1215 219 138 31 chr3 36967028 36967433 -122632350 - RLTR31B_Mm LTR ERVK 0 561 1 7 867 240 235 0 184 chr3 36967433 36967558 -122632225 - L1M4 LINE L1 -1353 4793 4692 7 867 283 265 34 17 chr3 36968118 36968237 -122631546 + L1MA4 LINE L1 5802 5922 -378 7 867 210 306 130 53 chr3 36969127 36969258 -122630525 + B1F1 SINE Alu 1 141 -8 7 867 265 297 71 18 chr3 36969156 36969269 -122630514 + B4A SINE B4 112 230 -62 7 867 210 338 14 14 chr3 36969278 36969347 -122630436 + ID2 SINE ID 14 82 -1 7 867 198 191 0 0 chr3 36969458 36969500 -122630283 + (TA)n Simple_repeat Simple_repeat 2 43 0 7 867 271 340 97 7 chr3 36969513 36969667 -122630116 + MIR SINE MIR 82 249 -13 7 867 798 261 25 6 chr3 36970531 36970693 -122629090 + B3A SINE B2 5 169 -29 7 867 8127 85 5 36 chr3 36970789 36971794 -122627989 + L1_Mur1 LINE L1 3762 4737 -1149 7 867 228 35 0 0 chr3 36971794 36971823 -122627960 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 7 867 8127 85 5 36 chr3 36971823 36972125 -122627658 + L1_Mur1 LINE L1 4738 5028 -858 7 867 9313 119 14 12 chr3 36972133 36974229 -122625554 + L1VL4 LINE L1 512 2595 -1222 7 867 3692 72 13 2 chr3 36974226 36974756 -122625027 - L1_Mur1 LINE L1 -3210 2676 2141 7 867 774 230 71 43 chr3 36974747 36975029 -122624754 - L1_Mur1 LINE L1 -6487 495 206 7 867 195 42 0 0 chr3 36975928 36975952 -122623831 + (TA)n Simple_repeat Simple_repeat 2 25 0 7 867 383 274 0 28 chr3 36975995 36976104 -122623679 + PB1D10 SINE Alu 5 110 -7 7 867 201 348 76 0 chr3 36976135 36976227 -122623556 - L2b LINE L2 -224 3151 3053 7 867 22 0 0 0 chr3 36976313 36976335 -122623448 + AT_rich Low_complexity Low_complexity 1 22 0 7 867 21 71 0 0 chr3 36976379 36976421 -122623362 + AT_rich Low_complexity Low_complexity 1 42 0 7 867 868 189 12 12 chr3 36979071 36979237 -122620546 + B2_Mm2 SINE B2 4 169 -26 7 867 6745 102 92 8 chr3 36979264 36980312 -122619471 - Lx3B LINE L1 0 6973 5838 7 867 886 179 119 0 chr3 36980534 36980735 -122619048 + URR1A DNA MER1_type 2 226 0 7 867 520 311 120 8 chr3 36981186 36981445 -122618338 + B4A SINE B4 4 291 -1 7 867 252 0 0 0 chr3 36981451 36981479 -122618304 + (CA)n Simple_repeat Simple_repeat 2 29 0 7 867 423 0 0 0 chr3 36981481 36981528 -122618255 + (TC)n Simple_repeat Simple_repeat 2 48 0 7 867 29 70 0 0 chr3 36982920 36982977 -122616806 + AT_rich Low_complexity Low_complexity 1 57 0 7 867 277 200 0 0 chr3 36983027 36983072 -122616711 - ID_B1 SINE B4 -6 218 174 7 867 1806 154 102 9 chr3 36983076 36983391 -122616392 - ORR1B1 LTR MaLR -8 386 43 7 867 735 252 0 0 chr3 36983453 36983584 -122616199 - B1_Mur1 SINE Alu -10 139 9 7 867 406 246 14 106 chr3 36983467 36983608 -122616175 - MT2B LTR ERVL -327 274 147 7 867 506 239 162 101 chr3 36984208 36984677 -122615106 - RMER4B LTR ERVK -9 457 1 7 867 896 293 51 67 chr3 36985447 36985955 -122613828 - L1M1 LINE L1 -496 5804 5305 7 867 1278 298 59 32 chr3 36986013 36986559 -122613224 - Lx6 LINE L1 -27 7433 6498 7 867 263 268 46 11 chr3 36986549 36986636 -122613147 - Lx6 LINE L1 -704 6346 6257 7 867 232 191 54 43 chr3 36986720 36986813 -122612970 - L1_Mur2 LINE L1 -2656 3221 3128 7 867 6085 57 3 15 chr3 36986831 36987612 -122612171 - L1_Mus1 LINE L1 -2 6565 5795 7 867 225 265 69 30 chr3 36987612 36987713 -122612070 - L1MC LINE L1 -2182 5700 5596 7 867 418 265 18 64 chr3 36988163 36988272 -122611511 - RSINE1 SINE B4 -6 159 56 7 867 7531 79 18 0 chr3 36988309 36989627 -122610156 - L1_Mus3 LINE L1 0 6638 5303 7 867 823 226 134 0 chr3 36990331 36990517 -122609266 - B3 SINE B2 -4 212 2 7 867 234 310 0 17 chr3 36991226 36991285 -122608498 - MIR SINE MIR -187 75 18 7 867 32010 74 3 2 chr3 36991653 36996767 -122603016 + L1Md_F2 LINE L1 466 5586 -297 7 867 8036 50 1 7 chr3 36996767 36997768 -122602015 + L1Md_F2 LINE L1 5587 6581 -1 7 867 246 371 0 19 chr3 36997830 36997937 -122601846 + Lx8 LINE L1 7218 7322 -151 7 867 265 257 48 38 chr3 36998495 36998600 -122601183 - PB1D9 SINE Alu -13 107 2 7 867 1011 232 105 54 chr3 36998626 36999035 -122600748 - L1_Rod LINE L1 -114 5733 5304 7 867 5395 74 6 3 chr3 36999069 37000000 -122599783 + MusHAL1 LINE L1 7 938 -2415 7 867 15470 62 60 6 chr3 37000000 37002150 -122597633 + MusHAL1 LINE L1 298 2565 -147 1 867 1509 225 24 44 chr3 37002241 37002463 -122597320 - L1_Rod LINE L1 -619 5228 5013 2 867 1956 120 67 22 chr3 37002463 37002778 -122597005 - ORR1A4 LTR MaLR 0 329 1 3 867 1509 225 24 44 chr3 37002778 37003006 -122596777 - L1_Rod LINE L1 -835 5012 4787 2 867 387 41 0 0 chr3 37003017 37003066 -122596717 + (CTA)n Simple_repeat Simple_repeat 1 49 0 4 867 297 0 0 0 chr3 37003066 37003099 -122596684 + (TAA)n Simple_repeat Simple_repeat 3 35 0 5 867 22 35 0 0 chr3 37003164 37003193 -122596590 + AT_rich Low_complexity Low_complexity 1 29 0 6 867 468 65 39 0 chr3 37003222 37003299 -122596484 + (GGAA)n Simple_repeat Simple_repeat 2 81 0 7 867 442 212 8 0 chr3 37003337 37003428 -122596355 + B3A SINE B2 4 99 -117 8 867 355 310 188 35 chr3 37003919 37004256 -122595527 - MLT1H LTR MaLR -15 474 114 9 867 1105 134 64 0 chr3 37004488 37004659 -122595124 + B2_Mm1t SINE B2 1 182 -11 1 867 212 260 0 105 chr3 37005443 37005529 -122594254 - BC1_Mm scRNA scRNA -64 88 12 1 867 242 282 70 81 chr3 37005981 37006166 -122593617 + L1ME1 LINE L1 54 236 -6306 1 867 239 309 85 25 chr3 37006797 37006996 -122592787 + L1ME1 LINE L1 3278 3488 -3156 1 867 264 164 0 0 chr3 37007560 37007627 -122592156 + (ATG)n Simple_repeat Simple_repeat 3 69 0 1 867 306 270 147 11 chr3 37008274 37008465 -122591318 + L1ME1 LINE L1 3497 3713 -2931 1 867 239 196 118 0 chr3 37008465 37008516 -122591267 - Tigger1 DNA MER2_type -232 2186 2130 1 867 237 286 36 117 chr3 37008487 37008598 -122591185 - B1F1 SINE Alu -17 132 31 1 867 622 234 176 26 chr3 37008593 37008826 -122590957 - Tigger1 DNA MER2_type -316 2102 1835 1 867 1225 284 69 7 chr3 37008888 37009292 -122590491 - Tigger1 DNA MER2_type -1161 1257 829 1 867 625 271 169 29 chr3 37009294 37009770 -122590013 + L1ME1 LINE L1 5966 6501 -176 1 867 501 17 0 0 chr3 37010215 37010273 -122589510 + (TC)n Simple_repeat Simple_repeat 2 59 0 1 867 853 250 6 23 chr3 37011806 37011978 -122587805 - B3A SINE B2 -28 170 2 1 867 8154 119 48 6 chr3 37012222 37013477 -122586306 - Lx3C LINE L1 0 6976 5669 1 867 6177 129 9 20 chr3 37013471 37014311 -122585472 - Lx3C LINE L1 -996 4881 4058 1 867 3417 58 2 0 chr3 37014311 37014706 -122585077 - MTA_Mm LTR MaLR 0 396 1 1 867 6177 129 9 20 chr3 37014706 37014868 -122584915 - Lx3C LINE L1 -1820 4057 3890 1 867 2046 144 8 5 chr3 37014866 37015236 -122584547 - Lx3C LINE L1 -2367 3519 3149 1 867 564 255 20 0 chr3 37015209 37015362 -122584421 - Lx3C LINE L1 -6033 951 796 1 867 441 0 30 30 chr3 37015416 37015482 -122584301 + (TTTTG)n Simple_repeat Simple_repeat 3 68 0 2 867 1208 62 0 0 chr3 37015482 37015617 -122584166 - B1_Mus1 SINE Alu -11 137 3 2 867 492 18 0 0 chr3 37016476 37016533 -122583250 + (CA)n Simple_repeat Simple_repeat 2 58 0 2 867 295 325 55 12 chr3 37016910 37017075 -122582708 - L1M5 LINE L1 -1708 4438 4267 2 867 222 326 65 11 chr3 37017222 37017315 -122582468 + PB1D10 SINE Alu 7 104 -13 2 867 455 228 193 0 chr3 37017322 37017436 -122582347 - RSINE1 SINE B4 -25 140 5 2 867 24 32 0 0 chr3 37017730 37017761 -122582022 + AT_rich Low_complexity Low_complexity 1 31 0 2 867 552 30 0 0 chr3 37019025 37019091 -122580692 + (TC)n Simple_repeat Simple_repeat 1 66 0 2 867 243 0 0 0 chr3 37019091 37019117 -122580666 + (CA)n Simple_repeat Simple_repeat 1 27 0 2 867 229 266 89 0 chr3 37019193 37019272 -122580511 + MLT1A1 LTR MaLR 323 408 0 2 867 27 29 0 0 chr3 37019956 37019990 -122579793 + AT_rich Low_complexity Low_complexity 1 34 0 3 867 1338 34 0 0 chr3 37021149 37021296 -122578487 + B1_Mus1 SINE Alu 1 147 -1 3 867 252 41 60 20 chr3 37021296 37021346 -122578437 + (CAAA)n Simple_repeat Simple_repeat 1 52 0 3 867 525 338 0 26 chr3 37022596 37022748 -122577035 + RSINE1 SINE B4 5 152 -13 3 867 519 17 0 0 chr3 37022751 37022811 -122576972 + (CATA)n Simple_repeat Simple_repeat 1 60 0 3 867 347 41 20 0 chr3 37024688 37024737 -122575046 + (CTG)n Simple_repeat Simple_repeat 1 50 0 3 867 402 239 0 0 chr3 37025659 37025772 -122574011 + (TG)n Simple_repeat Simple_repeat 2 114 0 3 867 520 242 5 134 chr3 37025794 37025980 -122573803 - RSINE1 SINE B4 0 165 4 3 867 296 269 150 63 chr3 37026372 37026499 -122573284 + RSINE1 SINE B4 4 141 -24 3 867 225 283 42 26 chr3 37026537 37026615 -122573168 - MIR SINE MIR -180 88 2 3 867 181 354 0 44 chr3 37027962 37028030 -122571753 - MIRm SINE MIR -107 169 105 4 867 629 177 126 37 chr3 37028879 37029008 -122570775 + B1_Mur3 SINE Alu 1 141 -8 4 867 194 0 39 0 chr3 37029008 37029034 -122570749 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 4 867 668 119 9 0 chr3 37029066 37029175 -122570608 + (GGAA)n Simple_repeat Simple_repeat 3 112 0 4 867 1723 124 6 4 chr3 37029450 37029520 -122570263 + RLTR20A LTR ERVK 91 146 -395 4 867 186 43 0 0 chr3 37029520 37029543 -122570240 + (GGGTG)n Simple_repeat Simple_repeat 4 26 0 4 867 1723 163 102 77 chr3 37029543 37029831 -122569952 + RLTR20A LTR ERVK 147 448 -93 4 867 225 0 0 0 chr3 37029831 37029856 -122569927 + (TG)n Simple_repeat Simple_repeat 2 26 0 4 867 1723 163 102 77 chr3 37029856 37029944 -122569839 + RLTR20A LTR ERVK 449 540 -1 4 867 513 260 68 28 chr3 37030193 37030528 -122569255 + Lx7 LINE L1 7242 7696 0 4 867 5598 67 3 3 chr3 37031758 37032432 -122567351 - L1_Mus3 LINE L1 0 6638 5965 4 867 634 277 149 40 chr3 37032450 37032740 -122567043 + B4A SINE B4 3 288 -4 4 867 960 175 119 21 chr3 37032771 37032964 -122566819 + B3 SINE B2 1 212 -4 5 867 522 250 86 0 chr3 37033420 37033536 -122566247 + PB1 SINE Alu 1 126 -1 5 867 572 240 66 91 chr3 37033919 37034116 -122565667 - B3A SINE B2 -3 195 4 5 867 306 203 58 0 chr3 37034657 37034726 -122565057 + MLT1J LTR MaLR 401 473 -39 5 867 555 305 99 1 chr3 37035311 37035549 -122564234 + L1M4 LINE L1 4768 5027 -1113 5 867 35 24 0 0 chr3 37035837 37035879 -122563904 + AT_rich Low_complexity Low_complexity 1 42 0 5 867 1534 284 71 23 chr3 37036693 37037379 -122562404 - L1MA9 LINE L1 -41 6335 5617 5 867 217 229 0 0 chr3 37037405 37037453 -122562330 + CT-rich Low_complexity Low_complexity 1 48 0 5 867 680 87 19 0 chr3 37037458 37037562 -122562221 + (TTTC)n Simple_repeat Simple_repeat 3 108 0 5 867 650 185 8 32 chr3 37037565 37037688 -122562095 - B1_Mm SINE Alu -1 146 27 5 867 290 246 130 9 chr3 37037689 37037804 -122561979 - L1MA9 LINE L1 -687 5548 5420 5 867 267 286 139 48 chr3 37037820 37038152 -122561631 - L1MA9 LINE L1 -3108 3096 2735 5 867 1548 140 152 21 chr3 37038388 37038717 -122561066 - RMER6A LTR ERVK -124 632 261 6 867 283 200 0 0 chr3 37038714 37038764 -122561019 + B1_Mur3 SINE Alu 87 136 -13 6 867 324 0 0 0 chr3 37038766 37038802 -122560981 + (GA)n Simple_repeat Simple_repeat 1 36 0 6 867 233 271 0 0 chr3 37038877 37038925 -122560858 - BC1_Mm scRNA scRNA -92 60 13 6 867 606 303 89 18 chr3 37039010 37039447 -122560336 - L1MA9 LINE L1 -4658 1483 1016 5 867 251 292 61 67 chr3 37039476 37039641 -122560142 + L2c LINE L2 2074 2237 -1182 6 867 674 264 10 97 chr3 37039760 37039799 -122559984 - MTE2b LTR MaLR -10 369 337 6 867 5682 99 48 38 chr3 37039799 37040695 -122559088 + RMER17A2 LTR ERVK 1 905 -1 6 867 674 264 10 97 chr3 37040695 37040861 -122558922 - MTE2b LTR MaLR -43 336 182 6 867 418 220 139 51 chr3 37040954 37041112 -122558671 + RLTR20B3 LTR ERVK 11 182 -395 6 867 474 49 0 0 chr3 37041113 37041174 -122558609 + (TA)n Simple_repeat Simple_repeat 2 62 0 6 867 1264 240 47 82 chr3 37041174 37041624 -122558159 - RLTR20B3 LTR ERVK -124 453 20 6 867 630 212 42 162 chr3 37041632 37041823 -122557960 - MTE2b LTR MaLR -194 185 18 6 867 785 246 50 132 chr3 37041893 37042453 -122557330 - RLTR11A2 LTR ERVK -2 566 1 7 867 5174 186 46 49 chr3 37042453 37043760 -122556023 - MYSERV6-int LTR ERVK 0 8959 7813 7 867 312 265 58 58 chr3 37043762 37043918 -122555865 - RMER4A LTR ERVK -58 408 253 7 867 264 270 140 0 chr3 37044002 37044102 -122555681 + L2c LINE L2 2770 2883 -536 6 867 189 306 53 90 chr3 37044353 37044486 -122555297 + L2c LINE L2 3253 3380 -7 6 867 1240 168 22 35 chr3 37044540 37044768 -122555015 + URR1B DNA MER1_type 1 225 0 7 867 540 82 82 0 chr3 37045139 37045215 -122554568 + RMER17A LTR ERVK 1 83 -668 7 867 816 11 0 0 chr3 37045215 37045308 -122554475 + (TC)n Simple_repeat Simple_repeat 1 93 0 7 867 1228 177 60 92 chr3 37045308 37045656 -122554127 + RMER17A LTR ERVK 415 751 0 7 867 329 264 14 0 chr3 37045982 37046054 -122553729 + RMER10B LTR ERVL 269 341 -57 7 867 490 295 186 31 chr3 37046504 37047248 -122552535 + L1MA6 LINE L1 4933 5796 -504 7 867 411 119 0 0 chr3 37047248 37047315 -122552468 + (TG)n Simple_repeat Simple_repeat 1 67 0 7 867 384 291 225 26 chr3 37047315 37047430 -122552353 + L1MA6 LINE L1 5797 5935 -365 7 867 397 309 40 8 chr3 37048322 37048446 -122551337 + B4A SINE B4 2 129 -163 7 867 396 194 14 0 chr3 37048473 37048545 -122551238 + URR1B DNA MER1_type 126 198 -27 8 867 1207 46 11 17 chr3 37048864 37049042 -122550741 + (GAA)n Simple_repeat Simple_repeat 1 177 0 8 867 649 140 23 0 chr3 37049631 37049802 -122549981 + (TCTG)n Simple_repeat Simple_repeat 4 178 0 8 867 530 326 120 18 chr3 37049962 37050246 -122549537 + MER34A1 LTR ERV1 18 330 -257 8 867 662 109 37 37 chr3 37050562 37050865 -122548918 + (TCTCTG)n Simple_repeat Simple_repeat 1 302 0 8 867 280 111 0 0 chr3 37050865 37050910 -122548873 + (TC)n Simple_repeat Simple_repeat 1 45 0 8 867 459 0 0 0 chr3 37050910 37050961 -122548822 + (TG)n Simple_repeat Simple_repeat 2 52 0 8 867 235 273 0 0 chr3 37051429 37051484 -122548299 - MER44D DNA MER2_type -599 106 52 8 867 251 69 0 79 chr3 37052395 37052458 -122547325 + (CACCC)n Simple_repeat Simple_repeat 3 60 0 8 867 238 231 0 97 chr3 37053319 37053391 -122546392 + RLTR9C LTR ERVK 45 109 -284 8 867 384 267 9 0 chr3 37054293 37054398 -122545385 + B4 SINE B4 118 223 -69 9 867 256 291 19 37 chr3 37054427 37054534 -122545249 + (CA)n Simple_repeat Simple_repeat 2 106 0 9 867 324 0 0 0 chr3 37055434 37055470 -122544313 + (CAAAA)n Simple_repeat Simple_repeat 4 39 0 9 867 261 253 90 67 chr3 37055815 37055904 -122543879 + PB1D10 SINE Alu 27 117 0 9 867 666 0 0 0 chr3 37056384 37056458 -122543325 + (TC)n Simple_repeat Simple_repeat 1 74 0 9 867 413 270 30 95 chr3 37057879 37058047 -122541736 - MLT1A1 LTR MaLR -1 407 251 9 867 2127 150 241 47 chr3 37058338 37058827 -122540956 - MT2B2 LTR ERVL 0 584 1 9 867 326 365 5 133 chr3 37060481 37060677 -122539106 - L1M5 LINE L1 -609 5515 5345 9 867 187 270 31 16 chr3 37061575 37061639 -122538144 - L3 LINE CR1 -3021 1468 1404 9 867 558 0 0 0 chr3 37062411 37062473 -122537310 + (TCCC)n Simple_repeat Simple_repeat 3 64 0 9 867 455 246 16 33 chr3 37062477 37062599 -122537184 - PB1D9 SINE Alu 0 120 1 1 867 654 199 0 151 chr3 37062839 37063011 -122536772 - ORR1B1-int LTR MaLR -262 1247 1102 1 867 733 184 0 7 chr3 37063516 37063658 -122536125 + ORR1A1 LTR MaLR 3 143 -203 1 867 1739 147 22 101 chr3 37063648 37064004 -122535779 + ORR1A2-int LTR MaLR 1636 1963 0 1 867 2085 111 33 60 chr3 37064004 37064340 -122535443 + ORR1A2 LTR MaLR 1 327 0 1 867 323 354 118 20 chr3 37064801 37065098 -122534685 - L1MEd LINE L1 -5361 758 433 1 867 26 0 0 0 chr3 37065215 37065241 -122534542 + AT_rich Low_complexity Low_complexity 1 26 0 1 867 1269 62 95 11 chr3 37065340 37065519 -122534264 + B2_Mm2 SINE B2 1 194 -1 1 867 1815 166 23 69 chr3 37065719 37066069 -122533714 + ORR1B2 LTR MaLR 1 334 -33 1 867 4917 28 16 0 chr3 37066069 37066633 -122533150 + L1Md_F3 LINE L1 5986 6558 -26 1 867 351 0 0 0 chr3 37066633 37066672 -122533111 + (TAA)n Simple_repeat Simple_repeat 1 39 0 1 867 447 71 0 0 chr3 37066672 37066728 -122533055 + ORR1B2 LTR MaLR 312 367 0 1 867 386 245 53 0 chr3 37067543 37067637 -122532146 + PB1D10 SINE Alu 13 111 -6 1 867 263 389 29 23 chr3 37069072 37069243 -122530540 + LTR80A LTR ERVL 396 567 -16 1 867 219 132 76 38 chr3 37069862 37070019 -122529764 + (CAGTA)n Simple_repeat Simple_repeat 2 164 0 1 867 258 151 65 29 chr3 37070053 37070370 -122529413 + (CAGTA)n Simple_repeat Simple_repeat 1 328 0 1 867 261 144 59 29 chr3 37070427 37070563 -122529220 + (CAGTA)n Simple_repeat Simple_repeat 5 144 0 1 867 283 214 68 25 chr3 37070592 37070755 -122529028 + (CAGTA)n Simple_repeat Simple_repeat 5 174 0 1 867 251 363 22 29 chr3 37070852 37070991 -122528792 + MIR SINE MIR 86 223 -39 1 867 410 262 0 0 chr3 37070995 37071075 -122528708 + ID4 SINE ID 3 82 -1 1 867 1727 80 91 8 chr3 37071214 37071466 -122528317 + L1Md_F2 LINE L1 6310 6582 0 1 867 417 20 0 0 chr3 37071539 37071589 -122528194 + (TG)n Simple_repeat Simple_repeat 2 51 0 1 867 338 259 12 109 chr3 37072127 37072292 -122527491 + MER5A DNA MER1_type 17 165 -24 1 867 231 156 22 0 chr3 37072303 37072348 -122527435 + L3 LINE CR1 4442 4487 -2 1 867 823 277 67 17 chr3 37074325 37074691 -122525092 - Lx7 LINE L1 -1675 5969 5587 1 867 3072 226 102 28 chr3 37074971 37075094 -122524689 - Lx9 LINE L1 -8 7636 7490 1 867 375 23 0 0 chr3 37075094 37075138 -122524645 + (CA)n Simple_repeat Simple_repeat 1 44 0 1 867 3072 226 102 28 chr3 37075138 37075905 -122523878 - Lx9 LINE L1 -155 7489 6680 1 867 1460 173 22 26 chr3 37075926 37076193 -122523590 + ORR1D1 LTR MaLR 1 266 -108 1 867 1938 206 76 34 chr3 37076267 37076346 -122523437 - RLTR16 LTR ERVK -12 493 413 1 867 279 0 0 0 chr3 37076346 37076377 -122523406 + (CA)n Simple_repeat Simple_repeat 2 32 0 1 867 576 0 0 0 chr3 37076377 37076440 -122523343 + (GA)n Simple_repeat Simple_repeat 2 65 0 1 867 1938 206 76 34 chr3 37076440 37076832 -122522951 - RLTR16 LTR ERVK -93 412 2 1 867 329 247 96 11 chr3 37076846 37076940 -122522843 + ORR1D1 LTR MaLR 283 384 0 1 867 2829 281 81 34 chr3 37076989 37077955 -122521828 + Lx8 LINE L1 6238 7248 -225 1 867 312 326 0 0 chr3 37078093 37078182 -122521601 + PB1D10 SINE Alu 2 90 -27 1 867 220 365 10 20 chr3 37078094 37078192 -122521591 + ID_B1 SINE B4 84 180 -44 1 867 216 0 0 0 chr3 37078196 37078220 -122521563 + (CA)n Simple_repeat Simple_repeat 1 24 0 1 867 405 0 0 0 chr3 37078220 37078264 -122521519 + (GA)n Simple_repeat Simple_repeat 2 46 0 1 867 382 238 67 38 chr3 37078995 37079100 -122520683 + PB1D10 SINE Alu 10 117 0 1 867 414 282 52 52 chr3 37079108 37079299 -122520484 + ORR1E LTR MaLR 50 240 -119 1 867 920 193 175 56 chr3 37079862 37080257 -122519526 - RMER10A LTR ERVL 0 442 1 1 867 531 0 0 0 chr3 37080281 37080340 -122519443 + (CTTG)n Simple_repeat Simple_repeat 1 59 0 1 867 198 0 0 0 chr3 37080713 37080735 -122519048 + (GGA)n Simple_repeat Simple_repeat 3 24 0 1 867 726 12 0 0 chr3 37081007 37081090 -122518693 + (TTC)n Simple_repeat Simple_repeat 2 84 0 1 867 503 297 55 0 chr3 37081095 37081223 -122518560 - ID_B1 SINE B4 -6 218 84 1 867 556 173 74 19 chr3 37081907 37082023 -122517760 - B1_Mus2 SINE Alu 0 120 9 1 867 347 300 90 5 chr3 37082842 37083043 -122516740 - ID_B1 SINE B4 -4 220 3 1 867 310 309 21 21 chr3 37083252 37083348 -122516435 + MTEa LTR MaLR 2 97 -282 1 867 1264 221 67 0 chr3 37083691 37083945 -122515838 + MTEa LTR MaLR 109 379 0 1 867 353 272 194 45 chr3 37084847 37085024 -122514759 + MIR SINE MIR 4 214 -54 1 867 22 0 0 0 chr3 37085232 37085254 -122514529 + AT_rich Low_complexity Low_complexity 1 22 0 1 867 417 314 84 118 chr3 37085379 37085762 -122514021 + MLT1B LTR MaLR 21 390 0 1 867 188 258 63 16 chr3 37085978 37086041 -122513742 - MIR SINE MIR -110 152 87 1 867 255 283 57 57 chr3 37086321 37086426 -122513357 - Arthur1B DNA Tip100 -374 851 747 1 867 231 218 0 0 chr3 37086426 37086481 -122513302 + (CACG)n Simple_repeat Simple_repeat 1 55 0 1 867 488 340 127 20 chr3 37086515 37086767 -122513016 - Arthur1B DNA Tip100 -526 699 421 1 867 255 306 106 18 chr3 37086787 37086900 -122512883 + ORR1E LTR MaLR 19 141 -218 1 867 368 267 22 0 chr3 37087194 37087284 -122512499 - MER106B DNA MER1_type -75 984 893 1 867 351 286 115 33 chr3 37088587 37088765 -122511018 + L2b LINE L2 3197 3376 -11 1 867 1098 104 73 12 chr3 37091331 37091496 -122508287 + B2_Mm2 SINE B2 4 178 -17 1 867 6061 71 1 20 chr3 37092565 37093368 -122506415 + L1Md_F2 LINE L1 5795 6582 0 1 868 271 226 33 87 chr3 37093716 37093808 -122505975 - PB1D10 SINE Alu 0 117 31 1 868 2016 115 55 96 chr3 37093788 37094172 -122505611 + ORR1B1 LTR MaLR 27 394 0 1 868 4474 122 30 14 chr3 37094646 37095355 -122504428 - RMER17B LTR ERVK 0 958 239 1 868 273 213 67 0 chr3 37095357 37095432 -122504351 + Lx9 LINE L1 7561 7640 -4 1 868 29 60 0 0 chr3 37095432 37095482 -122504301 + AT_rich Low_complexity Low_complexity 1 50 0 1 868 833 204 45 58 chr3 37095601 37095825 -122503958 + RMER17B LTR ERVK 1 221 -737 1 868 1900 156 37 24 chr3 37095825 37096153 -122503630 - Lx9 LINE L1 -787 6857 6526 1 868 733 261 12 18 chr3 37097048 37097216 -122502567 + ID_B1 SINE B4 2 168 -56 1 868 195 42 0 0 chr3 37097602 37097626 -122502157 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1 868 382 124 19 93 chr3 37098557 37098664 -122501119 - RMER17C LTR ERVK 0 410 312 1 868 914 166 29 24 chr3 37098661 37098871 -122500912 - RMER17C LTR ERVK -562 396 186 1 868 2293 133 170 28 chr3 37098877 37099496 -122500287 - RMER17C-int LTR ERVK 0 3238 2532 1 868 714 143 170 58 chr3 37099484 37099655 -122500128 - RMER17C-int LTR ERVK -879 2359 2170 1 868 874 193 231 32 chr3 37099660 37100080 -122499703 - RMER17C-int LTR ERVK -1250 1988 1485 1 868 207 204 0 0 chr3 37100474 37100518 -122499265 + GA-rich Low_complexity Low_complexity 3 46 0 1 868 1071 176 210 39 chr3 37100764 37101222 -122498561 - RMER17C-int LTR ERVK -2642 596 61 1 868 1722 146 28 39 chr3 37101223 37101587 -122498196 - RMER17C LTR ERVK -49 361 2 1 868 265 194 16 16 chr3 37105366 37105429 -122494354 + C-rich Low_complexity Low_complexity 3 65 0 1 868 565 283 92 5 chr3 37106485 37106670 -122493113 + RMER30 DNA MER1_type 2 202 0 1 868 184 312 77 15 chr3 37107457 37107522 -122492261 - L2b LINE L2 -9 3366 3298 1 868 598 258 0 0 chr3 37107758 37107886 -122491897 + ID_B1 SINE B4 77 204 -20 1 868 480 331 0 24 chr3 37107893 37108020 -122491763 + RSINE1 SINE B4 25 148 -17 1 868 194 194 16 0 chr3 37108220 37108282 -122491501 + CT-rich Low_complexity Low_complexity 2 64 0 1 868 656 170 54 0 chr3 37109059 37109171 -122490612 + B1_Mus2 SINE Alu 1 118 -29 1 868 432 0 0 0 chr3 37109171 37109219 -122490564 + (CAAT)n Simple_repeat Simple_repeat 1 48 0 1 868 260 192 19 0 chr3 37109327 37109379 -122490404 - MER34A LTR ERV1 -518 53 1 1 868 281 368 17 17 chr3 37110280 37110396 -122489387 + MER20 DNA MER1_type 10 125 -94 1 868 327 357 130 41 chr3 37111103 37111442 -122488341 - L1MEf LINE L1 -4448 1752 1384 1 868 926 35 9 0 chr3 37111473 37111588 -122488195 - B1_Mus1 SINE Alu 0 148 33 1 868 313 311 93 114 chr3 37111507 37111743 -122488040 - MT2B LTR ERVL -337 264 34 1 868 232 317 147 38 chr3 37111676 37112152 -122487631 - L1MEf LINE L1 -4907 1293 766 1 868 206 167 23 23 chr3 37112236 37112279 -122487504 + CT-rich Low_complexity Low_complexity 6 48 0 1 868 854 248 50 66 chr3 37112948 37113207 -122486576 - B4 SINE B4 -18 274 20 1 868 335 203 0 48 chr3 37113404 37113487 -122486296 - ID SINE ID -145 79 1 1 868 2809 55 2 115 chr3 37113555 37113990 -122485793 - RLTR10 LTR ERVK -4 386 1 1 868 16886 25 17 1 chr3 37113990 37115906 -122483877 - RLTR10-int LTR ERVK -1 1986 41 1 868 2809 55 2 115 chr3 37115922 37116357 -122483426 - RLTR10 LTR ERVK -4 386 1 1 868 431 211 33 0 chr3 37116357 37116447 -122483336 + PB1D10 SINE Alu 24 116 -1 1 868 217 377 0 13 chr3 37116846 37116924 -122482859 + ID4_ SINE ID 5 81 -2 1 868 775 326 7 60 chr3 37117733 37118033 -122481750 - B4 SINE B4 -1 291 8 1 868 2461 157 90 26 chr3 37119395 37119495 -122480288 - RLTR20B3 LTR ERVK 0 577 483 1 868 510 17 0 0 chr3 37119495 37119554 -122480229 + (CA)n Simple_repeat Simple_repeat 2 60 0 1 868 2461 157 90 26 chr3 37119554 37119995 -122479788 - RLTR20B3 LTR ERVK -95 482 1 1 868 411 177 0 0 chr3 37120014 37120110 -122479673 + (CA)n Simple_repeat Simple_repeat 2 97 0 1 868 608 232 0 39 chr3 37120260 37120390 -122479393 + B1F SINE Alu 24 148 -1 1 868 257 347 36 88 chr3 37120510 37120571 -122479212 - L2 LINE L2 -545 2874 2812 1 868 676 276 0 19 chr3 37120571 37120730 -122479053 - RSINE1 SINE B4 -8 157 2 1 868 257 347 36 88 chr3 37120730 37120861 -122478922 - L2 LINE L2 -608 2811 2692 1 868 321 26 0 0 chr3 37121946 37121984 -122477799 + (TC)n Simple_repeat Simple_repeat 2 39 0 1 868 612 101 0 0 chr3 37121984 37122072 -122477711 + (TA)n Simple_repeat Simple_repeat 2 90 0 1 868 231 36 0 0 chr3 37124459 37124487 -122475296 + (TTAA)n Simple_repeat Simple_repeat 3 30 0 1 868 198 143 0 0 chr3 37124703 37124738 -122475045 + (TCC)n Simple_repeat Simple_repeat 2 36 0 1 868 591 90 0 47 chr3 37125542 37125670 -122474113 + (TTCC)n Simple_repeat Simple_repeat 2 123 0 1 868 294 268 31 10 chr3 37125678 37125776 -122474007 - PB1D10 SINE Alu -7 110 11 1 868 307 222 8 8 chr3 37127089 37127207 -122472576 + (TG)n Simple_repeat Simple_repeat 1 118 0 1 868 225 224 58 29 chr3 37127236 37127305 -122472478 - ID4_ SINE ID -9 74 4 1 868 348 24 0 0 chr3 37127953 37127994 -122471789 + (TG)n Simple_repeat Simple_repeat 1 41 0 1 868 321 293 58 47 chr3 37129308 37129480 -122470303 - MER20 DNA MER1_type -17 202 29 1 868 302 294 10 0 chr3 37130571 37130673 -122469110 + GA-rich Low_complexity Low_complexity 5 107 0 2 868 37 23 0 0 chr3 37130973 37131017 -122468766 + AT_rich Low_complexity Low_complexity 1 44 0 2 868 27 0 0 0 chr3 37131289 37131316 -122468467 + AT_rich Low_complexity Low_complexity 1 27 0 2 868 405 0 0 0 chr3 37131801 37131846 -122467937 + (TG)n Simple_repeat Simple_repeat 1 45 0 2 868 1021 211 40 0 chr3 37132976 37133199 -122466584 + Lx7 LINE L1 7132 7363 -333 2 868 34 65 0 0 chr3 37133199 37133261 -122466522 + AT_rich Low_complexity Low_complexity 1 62 0 2 868 1646 156 5 94 chr3 37133268 37133642 -122466141 + Lx7 LINE L1 7356 7696 0 2 868 668 210 176 5 chr3 37133782 37133969 -122465814 - URR1B DNA MER1_type 0 225 7 2 868 219 200 0 0 chr3 37134423 37134456 -122465327 + polypyrimidine Low_complexity Low_complexity 8 40 0 2 868 1618 110 0 16 chr3 37134456 37134714 -122465069 - Lx LINE L1 -2 6652 6399 2 868 205 291 0 0 chr3 37134791 37134846 -122464937 - MIR SINE MIR -168 94 40 2 868 8323 81 10 1 chr3 37134855 37136399 -122463384 - L1_Mus3 LINE L1 0 6638 5080 2 868 8997 107 12 100 chr3 37136393 37137122 -122462661 + L1_Mm LINE L1 1277 2017 -3866 2 868 546 102 177 15 chr3 37137122 37137216 -122462567 + RMER17B LTR ERVK 310 424 -534 2 868 623 13 13 0 chr3 37137216 37137292 -122462491 + (TC)n Simple_repeat Simple_repeat 2 78 0 2 868 546 102 177 15 chr3 37137292 37137327 -122462456 + RMER17B LTR ERVK 425 460 -498 2 868 8997 107 12 100 chr3 37137327 37138143 -122461640 + L1_Mm LINE L1 2018 2804 -3079 2 868 4635 175 24 8 chr3 37138148 37139232 -122460551 - Lx7 LINE L1 -1174 6522 5411 2 868 3547 175 21 39 chr3 37139227 37140187 -122459596 - Lx7 LINE L1 -2128 3752 2128 2 868 8276 140 6 30 chr3 37140568 37141239 -122458544 - L1_Mur2 LINE L1 -558 5319 4668 2 868 6282 53 2 25 chr3 37141239 37142050 -122457733 - L1Md_F2 LINE L1 0 6582 5790 2 868 8276 140 6 30 chr3 37142050 37142824 -122456959 - L1_Mur2 LINE L1 -1210 4667 3908 2 868 304 44 0 0 chr3 37142824 37142869 -122456914 + Lx LINE L1 6597 6641 -13 2 868 203 152 22 0 chr3 37142870 37142916 -122456867 + GA-rich Low_complexity Low_complexity 4 50 0 2 868 549 285 117 49 chr3 37143004 37143354 -122456429 + Tigger9b DNA MER2_type 248 621 -3 2 868 243 0 0 0 chr3 37143426 37143453 -122456330 + (TTTTTA)n Simple_repeat Simple_repeat 2 28 0 2 868 764 147 7 0 chr3 37143455 37143605 -122456178 + CT-rich Low_complexity Low_complexity 2 152 0 2 868 320 293 62 28 chr3 37143718 37143862 -122455921 - B1F SINE Alu 0 149 1 2 868 2415 49 3 3 chr3 37144152 37144478 -122455305 + IAPEY2_LTR LTR ERVK 32 357 0 2 868 810 139 51 38 chr3 37144478 37144635 -122455148 + IAPLTR4_I LTR ERVK 22 180 -1290 2 868 9216 125 17 53 chr3 37144634 37146148 -122453635 + IAPEY3-int LTR ERVK 524 1982 -5698 2 868 747 136 18 0 chr3 37146125 37146235 -122453548 + IAPEY3-int LTR ERVK 2238 2349 -5331 2 868 3528 72 56 0 chr3 37146235 37146968 -122452815 + IAPEY3-int LTR ERVK 6907 7680 0 2 868 2412 56 3 3 chr3 37146979 37147304 -122452479 + IAPEY2_LTR LTR ERVK 33 357 0 2 868 447 19 0 0 chr3 37149168 37149220 -122450563 + (CA)n Simple_repeat Simple_repeat 1 52 0 2 868 222 22 87 22 chr3 37149661 37149707 -122450076 + (TCTG)n Simple_repeat Simple_repeat 4 52 0 2 868 420 181 0 0 chr3 37149719 37149802 -122449981 + (CA)n Simple_repeat Simple_repeat 1 83 0 2 868 8075 146 17 17 chr3 37149925 37151732 -122448051 - Lx2B LINE L1 -23 6977 5176 2 868 841 123 0 28 chr3 37152266 37152408 -122447375 + URR1B DNA MER1_type 88 225 0 2 868 3448 33 2 0 chr3 37152534 37152929 -122446854 + MTA_Mm LTR MaLR 1 396 0 2 868 9481 34 2 0 chr3 37152929 37154025 -122445758 + MTA_Mm-int LTR MaLR 1 1098 0 2 868 3248 29 28 8 chr3 37154025 37154413 -122445370 + MTA_Mm LTR MaLR 1 396 0 2 868 542 270 47 16 chr3 37155507 37155635 -122444148 + ETnERV2-int LTR ERVK 7070 7201 -205 2 868 846 242 66 54 chr3 37156023 37156281 -122443502 + B4A SINE B4 24 284 -8 2 868 203 256 0 0 chr3 37156306 37156345 -122443438 + (CACG)n Simple_repeat Simple_repeat 1 39 0 2 868 1573 138 12 4 chr3 37157672 37157927 -122441856 + Lx LINE L1 6394 6650 -4 2 868 441 0 0 0 chr3 37158236 37158285 -122441498 + (ACTG)n Simple_repeat Simple_repeat 2 50 0 2 868 22 0 0 0 chr3 37159067 37159089 -122440694 + AT_rich Low_complexity Low_complexity 1 22 0 2 868 6385 85 29 1 chr3 37159645 37160537 -122439246 + Lx3_Mus LINE L1 6092 7008 -1 2 868 977 71 0 7 chr3 37161536 37161678 -122438105 + B1_Mus1 SINE Alu 8 148 0 2 868 203 0 37 0 chr3 37161678 37161705 -122438078 + (CAAAC)n Simple_repeat Simple_repeat 2 29 0 2 868 2153 169 110 5 chr3 37161858 37162239 -122437544 + MTC LTR MaLR 1 421 0 2 868 302 262 0 0 chr3 37162260 37162341 -122437442 + ID4 SINE ID 12 92 -60 2 868 563 220 6 22 chr3 37162679 37162860 -122436923 + CT-rich Low_complexity Low_complexity 1 178 0 2 868 307 259 142 22 chr3 37163048 37163182 -122436601 + MTEa LTR MaLR 16 165 -214 2 868 522 317 74 0 chr3 37163277 37163507 -122436276 + MT2A LTR ERVL 287 533 0 2 868 889 292 91 42 chr3 37163822 37164183 -122435600 + MTEa LTR MaLR 1 379 0 2 868 255 279 221 32 chr3 37164255 37164536 -122435247 - L2c LINE L2 0 3387 3054 2 868 347 332 111 28 chr3 37164535 37164823 -122434960 - L2c LINE L2 -997 2422 2111 2 868 364 308 0 0 chr3 37165209 37165300 -122434483 + B1F SINE Alu 1 91 -58 2 868 6744 35 0 0 chr3 37165457 37166240 -122433543 + L1Md_T LINE L1 5800 6582 0 2 868 620 292 31 0 chr3 37166671 37166832 -122432951 - RMER30 DNA MER1_type -29 173 8 2 868 257 340 93 50 chr3 37166845 37167124 -122432659 - L2c LINE L2 -2553 866 576 2 868 252 0 0 0 chr3 37167646 37167674 -122432109 + (TC)n Simple_repeat Simple_repeat 2 29 0 2 868 659 12 12 0 chr3 37167674 37167753 -122432030 + (TG)n Simple_repeat Simple_repeat 2 82 0 2 868 477 0 0 0 chr3 37169105 37169158 -122430625 + (TG)n Simple_repeat Simple_repeat 2 54 0 2 868 474 328 43 75 chr3 37169161 37169349 -122430434 - B4 SINE B4 -109 183 2 2 868 592 163 16 0 chr3 37169729 37169858 -122429925 + (TCTA)n Simple_repeat Simple_repeat 2 132 0 2 868 222 189 149 0 chr3 37170531 37170605 -122429178 + MIR SINE MIR 117 201 -61 2 868 286 146 0 0 chr3 37171680 37171728 -122428055 + ID2 SINE ID 12 59 -24 2 868 213 320 13 0 chr3 37172091 37172166 -122427617 + MIR3 SINE MIR 112 187 -21 2 868 245 348 22 0 chr3 37172874 37172963 -122426820 - L3 LINE CR1 -116 4373 4283 2 868 310 307 0 0 chr3 37173056 37173131 -122426652 + ID2 SINE ID 9 83 0 2 868 219 114 0 0 chr3 37173261 37173296 -122426487 + (TCTG)n Simple_repeat Simple_repeat 1 35 0 2 868 267 203 0 0 chr3 37173934 37173993 -122425790 + (TA)n Simple_repeat Simple_repeat 1 59 0 2 868 257 241 69 0 chr3 37173994 37174052 -122425731 + MER2 DNA MER2_type 12 73 -272 2 868 657 214 26 99 chr3 37174084 37174276 -122425507 - B3A SINE B2 -2 196 19 2 868 334 274 127 54 chr3 37174274 37174440 -122425343 + MER2 DNA MER2_type 106 283 -62 2 868 510 17 0 0 chr3 37174472 37174531 -122425252 + (TAGA)n Simple_repeat Simple_repeat 3 61 0 2 868 195 184 0 0 chr3 37174532 37174570 -122425213 + (TA)n Simple_repeat Simple_repeat 1 38 0 2 868 333 0 0 0 chr3 37175563 37175600 -122424183 + (TG)n Simple_repeat Simple_repeat 2 38 0 2 868 267 274 0 0 chr3 37175608 37175670 -122424113 - B4 SINE B4 -228 64 3 2 868 289 286 62 71 chr3 37175880 37175993 -122423790 + RSINE1 SINE B4 3 114 -51 2 868 12738 96 62 29 chr3 37176552 37178217 -122421566 + RMER17C-int LTR ERVK 1097 2899 -339 2 868 531 0 0 0 chr3 37178217 37178276 -122421507 + (TG)n Simple_repeat Simple_repeat 2 60 0 2 868 12738 96 64 29 chr3 37178276 37178606 -122421177 + RMER17C-int LTR ERVK 2900 3238 0 2 868 1492 173 100 51 chr3 37178606 37178692 -122421091 + RMER17C LTR ERVK 1 92 -318 2 868 459 0 0 0 chr3 37178692 37178743 -122421040 + (TC)n Simple_repeat Simple_repeat 1 51 0 2 868 261 0 0 0 chr3 37178743 37178771 -122421012 + (CA)n Simple_repeat Simple_repeat 1 29 0 2 868 1492 173 100 51 chr3 37178771 37179072 -122420711 + RMER17C LTR ERVK 93 407 -3 2 868 234 0 0 0 chr3 37179095 37179121 -122420662 + (TTG)n Simple_repeat Simple_repeat 2 27 0 2 868 432 0 0 0 chr3 37181113 37181161 -122418622 + (CA)n Simple_repeat Simple_repeat 1 48 0 2 868 714 125 0 0 chr3 37181968 37182080 -122417703 + (TC)n Simple_repeat Simple_repeat 1 112 0 2 868 294 275 14 0 chr3 37182080 37182149 -122417634 - B1_Mur2 SINE Alu -6 143 74 2 868 320 213 12 96 chr3 37182206 37182289 -122417494 - PB1D9 SINE Alu -44 76 1 2 868 214 317 12 0 chr3 37183185 37183267 -122416516 + T-rich Low_complexity Low_complexity 3 85 0 2 868 482 294 32 36 chr3 37183683 37183902 -122415881 - L1MD LINE L1 -2031 4115 3898 2 868 283 300 21 72 chr3 37184022 37184096 -122415687 + B4A SINE B4 50 123 -169 2 868 441 0 0 0 chr3 37184096 37184145 -122415638 + (CA)n Simple_repeat Simple_repeat 2 50 0 2 868 283 300 21 72 chr3 37184145 37184167 -122415616 + B4A SINE B4 124 141 -151 2 868 4141 29 0 2 chr3 37184228 37184707 -122415076 - L1Md_F2 LINE L1 0 6582 6105 2 868 5049 35 0 8 chr3 37184707 37185514 -122414269 + L1Md_F2 LINE L1 5288 6090 -492 2 868 501 313 29 109 chr3 37186133 37186434 -122413349 - MTE-int LTR MaLR -1223 357 82 2 868 435 293 0 57 chr3 37186434 37186557 -122413226 + RMER2 LTR ERV1 1 116 -451 2 868 345 217 196 119 chr3 37186622 37186857 -122412926 + RMER2 LTR ERV1 288 540 -27 2 868 392 318 98 43 chr3 37187339 37187455 -122412328 + B4 SINE B4 90 217 -75 2 868 297 0 0 0 chr3 37187455 37187488 -122412295 + (CCAA)n Simple_repeat Simple_repeat 2 34 0 2 868 392 318 98 43 chr3 37187488 37187555 -122412228 + B4 SINE B4 218 282 -10 2 868 357 24 0 0 chr3 37187585 37187627 -122412156 + (CA)n Simple_repeat Simple_repeat 2 43 0 2 868 247 200 18 18 chr3 37187628 37187684 -122412099 - MTEa LTR MaLR -46 333 278 2 868 600 206 0 0 chr3 37187924 37188055 -122411728 + (TA)n Simple_repeat Simple_repeat 1 131 0 2 868 294 314 77 19 chr3 37188530 37188686 -122411097 + MLT1H LTR MaLR 373 537 -12 2 868 836 189 4 132 chr3 37188992 37189242 -122410541 - RLTR28 LTR ERVL 0 524 307 2 868 529 198 77 92 chr3 37189618 37189813 -122409970 + B3A SINE B2 6 197 -1 2 868 1565 167 71 3 chr3 37190192 37190516 -122409267 + MTC LTR MaLR 68 413 -8 2 868 554 301 193 22 chr3 37190741 37191144 -122408639 + MER70A LTR ERVL 1 472 0 2 868 474 18 0 0 chr3 37191215 37191270 -122408513 + (TG)n Simple_repeat Simple_repeat 1 55 0 2 868 4554 33 6 0 chr3 37191975 37192666 -122407117 - L1Md_F3 LINE L1 -466 6118 5424 2 868 3879 26 2 7 chr3 37192666 37193124 -122406659 + L1Md_F3 LINE L1 6128 6583 -1 2 868 3525 144 57 0 chr3 37193435 37194019 -122405764 - Lx5 LINE L1 -3 7047 6431 2 868 863 215 183 120 chr3 37194904 37195379 -122404404 + RMER20B LTR ERVK 1 505 -122 3 868 790 175 21 7 chr3 37196065 37196209 -122403574 + B1_Mus2 SINE Alu 2 147 0 3 868 189 0 0 0 chr3 37196214 37196235 -122403548 + (CAGA)n Simple_repeat Simple_repeat 2 22 0 3 868 341 231 0 0 chr3 37196243 37196308 -122403475 + ID4 SINE ID 19 83 0 3 868 214 248 8 62 chr3 37196736 37196865 -122402918 + G-rich Low_complexity Low_complexity 1 122 0 3 868 238 138 0 84 chr3 37196903 37196998 -122402785 + (GGGTG)n Simple_repeat Simple_repeat 3 89 0 3 868 505 296 37 5 chr3 37197186 37197373 -122402410 - ORR1E LTR MaLR -166 193 1 3 868 180 77 0 0 chr3 37199186 37199212 -122400571 + (CAA)n Simple_repeat Simple_repeat 2 27 0 3 868 222 37 0 0 chr3 37200112 37200139 -122399644 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 3 868 930 90 88 22 chr3 37200139 37200265 -122399518 - B1_Mus1 SINE Alu -12 136 1 3 868 235 0 297 0 chr3 37200395 37200432 -122399351 - ORR1A4 LTR MaLR -8 321 274 3 868 1187 61 0 26 chr3 37200454 37200605 -122399178 - B1_Mm SINE Alu 0 147 1 3 868 1800 121 64 78 chr3 37200606 37200966 -122398817 - ORR1B1 LTR MaLR -39 355 1 3 868 31 44 0 0 chr3 37200972 37201017 -122398766 + AT_rich Low_complexity Low_complexity 1 45 0 3 868 30 69 0 0 chr3 37201281 37201339 -122398444 + AT_rich Low_complexity Low_complexity 1 58 0 3 868 1093 64 14 0 chr3 37201938 37202079 -122397704 + B1_Mm SINE Alu 2 144 -3 3 868 234 0 0 0 chr3 37202082 37202108 -122397675 + (A)n Simple_repeat Simple_repeat 1 26 0 3 868 31 0 0 0 chr3 37203168 37203199 -122396584 + AT_rich Low_complexity Low_complexity 1 31 0 3 868 1271 262 80 31 chr3 37203218 37203376 -122396407 - RLTR12B LTR ERVK -19 509 335 3 868 267 31 0 0 chr3 37203376 37203408 -122396375 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 3 868 1271 262 80 31 chr3 37203408 37203734 -122396049 - RLTR12B LTR ERVK -194 334 2 3 868 1132 94 111 29 chr3 37203916 37204124 -122395659 + L1_Mus3 LINE L1 6414 6638 0 3 868 225 354 77 35 chr3 37204696 37204866 -122394917 - L1MC LINE L1 -2187 5695 5519 3 868 23 0 0 0 chr3 37204868 37204891 -122394892 + AT_rich Low_complexity Low_complexity 1 23 0 3 868 357 279 53 18 chr3 37205271 37205298 -122394485 - Lx8 LINE L1 -187 7286 7258 3 868 1430 198 129 12 chr3 37205298 37205630 -122394153 - ORR1D1 LTR MaLR 0 374 4 3 868 357 279 53 18 chr3 37205630 37205715 -122394068 - Lx8 LINE L1 -216 7257 7170 3 868 468 0 0 0 chr3 37206597 37206649 -122393134 + (CA)n Simple_repeat Simple_repeat 1 52 0 3 868 254 333 24 24 chr3 37206717 37206800 -122392983 + PB1D10 SINE Alu 7 89 -28 3 868 526 186 158 49 chr3 37207071 37207235 -122392548 + B3 SINE B2 27 208 -8 3 868 509 285 70 32 chr3 37207248 37207404 -122392379 - RSINE1 SINE B4 0 165 4 3 868 220 208 0 0 chr3 37209491 37209539 -122390244 - B1F SINE Alu -6 143 96 3 868 2331 132 105 14 chr3 37209766 37210251 -122389532 + RMER4B LTR ERVK 1 470 -115 3 868 215 304 248 4 chr3 37212349 37212587 -122387196 - L2 LINE L2 -338 3081 2786 3 868 373 210 48 61 chr3 37213807 37213954 -122385829 - Lx4B LINE L1 -4 7054 6910 3 868 982 309 79 21 chr3 37214099 37214618 -122385165 + L1MB5 LINE L1 4693 5241 -905 3 868 530 319 49 29 chr3 37214624 37214931 -122384852 - MER2 DNA MER2_type -5 340 28 3 868 731 242 28 22 chr3 37215020 37215202 -122384581 + L1MB5 LINE L1 5319 5501 -677 3 868 581 225 153 14 chr3 37215244 37215492 -122384291 + MLT1C LTR MaLR 61 370 -135 3 868 1813 221 103 31 chr3 37215582 37216167 -122383616 + L1MB5 LINE L1 5504 6130 -44 3 868 187 116 0 65 chr3 37217462 37217508 -122382275 + C-rich Low_complexity Low_complexity 3 45 0 3 868 318 286 143 0 chr3 37217588 37217686 -122382097 + PB1D10 SINE Alu 6 117 0 3 868 588 232 147 6 chr3 37220136 37220292 -122379491 - B3A SINE B2 -16 182 5 3 868 421 354 105 16 chr3 37220392 37220774 -122379009 - LTR40c LTR ERVL -13 452 37 3 868 505 232 249 59 chr3 37220778 37221062 -122378721 - ORR1D1 LTR MaLR 0 374 37 3 868 9033 128 36 11 chr3 37221077 37222480 -122377303 - Lx4A LINE L1 -1 7057 5619 3 868 441 0 0 0 chr3 37222505 37222554 -122377229 + (TTTA)n Simple_repeat Simple_repeat 2 50 0 3 868 366 123 0 0 chr3 37222599 37222656 -122377127 + (TTTG)n Simple_repeat Simple_repeat 2 58 0 3 868 259 292 111 0 chr3 37223778 37223850 -122375933 - B3A SINE B2 -110 88 9 3 868 480 254 163 38 chr3 37223861 37224045 -122375738 + Tigger5 DNA MER2_type 2192 2398 -8 3 869 676 266 167 0 chr3 37224887 37225079 -122374704 - ID_B1 SINE B4 0 224 1 3 869 329 288 44 76 chr3 37225299 37225457 -122374326 + L1MB8 LINE L1 6013 6165 -13 3 869 375 322 94 43 chr3 37226640 37226896 -122372887 - ORR1E LTR MaLR -4 355 87 3 869 910 256 118 78 chr3 37226898 37227404 -122372379 + RMER4B LTR ERVK 3 604 -7 3 869 25 65 0 0 chr3 37228207 37228253 -122371530 + AT_rich Low_complexity Low_complexity 1 46 0 3 869 651 169 15 61 chr3 37228536 37228668 -122371115 + B1_Mur4 SINE Alu 25 150 0 3 869 504 239 88 77 chr3 37228700 37228881 -122370902 + B4A SINE B4 5 187 -105 3 869 2258 106 77 31 chr3 37230750 37231141 -122368642 - RLTR9E LTR ERVK 0 409 1 3 869 689 259 64 11 chr3 37231842 37232029 -122367754 + B3A SINE B2 2 198 0 3 869 1121 57 63 0 chr3 37232105 37232263 -122367520 + L1Md_F2 LINE L1 6408 6575 -7 3 869 356 141 44 59 chr3 37232394 37232462 -122367321 - MER45A DNA Tip100 -52 126 60 3 869 327 195 65 54 chr3 37232960 37233052 -122366731 + MLT1A1 LTR MaLR 316 408 0 3 869 410 349 117 61 chr3 37233352 37233746 -122366037 + L1MC4a LINE L1 6485 6900 -982 3 869 1280 158 53 0 chr3 37233763 37233972 -122365811 - URR1B DNA MER1_type 0 225 6 3 869 445 303 71 79 chr3 37233972 37234000 -122365783 + CYRA11_Mm Unknown Y-chromosome 171 405 -212 3 869 277 272 43 26 chr3 37234042 37234159 -122365624 + L1MC4a LINE L1 7002 7120 -922 3 869 2348 144 40 69 chr3 37234245 37234751 -122365032 - RMER1C Other Other 0 1342 852 3 869 229 214 71 0 chr3 37234959 37235029 -122364754 + Cheshire DNA MER1_type 2062 2136 -284 3 869 567 207 113 43 chr3 37235897 37235963 -122363820 + ID SINE ID 3 78 -146 3 869 232 259 167 56 chr3 37235963 37236053 -122363730 + B1F2 SINE Alu 1 100 -49 3 869 319 128 0 0 chr3 37236182 37236229 -122363554 + ID_B1 SINE B4 176 222 -2 3 869 306 304 96 32 chr3 37236486 37236673 -122363110 - RMER20B LTR ERVK -1 515 317 3 869 495 248 34 0 chr3 37236836 37236953 -122362830 - RMER20B LTR ERVK -506 121 1 3 869 289 241 34 1 chr3 37237059 37237173 -122362610 - L1MA4 LINE L1 -373 5930 5812 3 869 22 0 0 0 chr3 37237251 37237273 -122362510 + AT_rich Low_complexity Low_complexity 1 22 0 3 869 377 278 99 21 chr3 37237428 37237619 -122362164 - L2 LINE L2 -1487 1932 1727 3 869 221 301 60 12 chr3 37237713 37237797 -122361986 - L2 LINE L2 -1840 1579 1492 3 869 864 68 23 8 chr3 37237944 37238077 -122361706 + (TTCC)n Simple_repeat Simple_repeat 2 136 0 3 869 529 269 46 0 chr3 37238105 37238235 -122361548 - B1_Mur1 SINE Alu 0 149 14 3 869 1057 250 120 18 chr3 37238920 37239246 -122360537 + ORR1E LTR MaLR 1 359 0 3 869 343 349 53 102 chr3 37239760 37240063 -122359720 + B4A SINE B4 5 292 0 3 869 597 215 140 34 chr3 37240158 37240336 -122359447 - B3A SINE B2 0 198 2 3 869 192 77 0 0 chr3 37241051 37241077 -122358706 + (CATG)n Simple_repeat Simple_repeat 1 26 0 3 869 443 337 29 62 chr3 37241112 37241321 -122358462 - B4 SINE B4 -86 206 5 3 869 639 48 0 0 chr3 37241670 37241753 -122358030 + (GAAA)n Simple_repeat Simple_repeat 2 84 0 3 869 563 290 45 76 chr3 37242481 37242705 -122357078 + ID_B1 SINE B4 3 219 -5 3 869 1080 122 0 0 chr3 37242737 37242885 -122356898 + B1_Mus1 SINE Alu 1 148 0 3 869 186 82 60 20 chr3 37242887 37242937 -122356846 + (CAAA)n Simple_repeat Simple_repeat 1 52 0 3 869 495 185 117 39 chr3 37243870 37244050 -122355733 + B3A SINE B2 4 214 -2 3 869 600 27 0 0 chr3 37244408 37244482 -122355301 + (GA)n Simple_repeat Simple_repeat 1 74 0 3 869 405 110 0 0 chr3 37244575 37244648 -122355135 + (TCTG)n Simple_repeat Simple_repeat 4 76 0 3 869 750 132 70 0 chr3 37245995 37246124 -122353659 + B1_Mus2 SINE Alu 2 139 -8 3 869 318 161 22 22 chr3 37246129 37246218 -122353565 + GA-rich Low_complexity Low_complexity 3 91 0 3 869 237 282 150 53 chr3 37246426 37246613 -122353170 + MER34A LTR ERV1 350 554 -17 3 869 221 191 0 60 chr3 37247500 37247567 -122352216 + G-rich Low_complexity Low_complexity 4 66 0 3 869 22 80 0 0 chr3 37247675 37247725 -122352058 + GC_rich Low_complexity Low_complexity 1 50 0 3 869 212 152 0 0 chr3 37248790 37248823 -122350960 - MER5A DNA MER1_type -155 34 2 3 869 239 157 20 0 chr3 37249914 37249965 -122349818 + CT-rich Low_complexity Low_complexity 3 54 0 3 869 4883 76 9 21 chr3 37250003 37250659 -122349124 - L1_Mus4 LINE L1 0 6636 5989 3 869 1886 156 0 13 chr3 37250659 37250961 -122348822 + L1_Mm LINE L1 4903 5203 -680 3 869 307 247 115 13 chr3 37250962 37251040 -122348743 - B1F2 SINE Alu -63 86 1 3 869 1022 186 53 14 chr3 37251075 37251282 -122348501 - B3 SINE B2 0 216 2 3 869 381 219 51 20 chr3 37251888 37251983 -122347800 + MTC LTR MaLR 2 99 -322 3 869 760 136 30 0 chr3 37251983 37252115 -122347668 - URR1B DNA MER1_type 0 225 90 3 869 2033 153 12 9 chr3 37252145 37252475 -122347308 + MTC LTR MaLR 91 421 0 3 869 216 0 0 0 chr3 37254414 37254438 -122345345 + (TTG)n Simple_repeat Simple_repeat 1 24 0 3 869 220 271 17 0 chr3 37254606 37254665 -122345118 + B4 SINE B4 2 61 -231 3 869 590 42 0 0 chr3 37254905 37254977 -122344806 + B2_Mm2 SINE B2 1 72 -123 3 869 262 169 108 72 chr3 37254977 37254988 -122344795 + B4 SINE B4 1 86 -206 3 869 4838 32 0 0 chr3 37255013 37255571 -122344212 + L1Md_F2 LINE L1 6025 6582 0 4 869 204 292 0 0 chr3 37256391 37256439 -122343344 + (CGTG)n Simple_repeat Simple_repeat 4 51 0 4 869 24 53 0 0 chr3 37256613 37256651 -122343132 + AT_rich Low_complexity Low_complexity 1 38 0 4 869 390 239 26 86 chr3 37257097 37257161 -122342622 - B3 SINE B2 0 216 158 4 869 468 0 0 0 chr3 37257161 37257213 -122342570 + (TG)n Simple_repeat Simple_repeat 2 53 0 4 869 390 227 174 43 chr3 37257213 37257325 -122342458 - B3 SINE B2 -36 162 27 4 869 381 233 21 43 chr3 37257327 37257421 -122342362 - PB1D7 SINE Alu -27 93 2 4 869 576 0 0 0 chr3 37257808 37257872 -122341911 + (TC)n Simple_repeat Simple_repeat 1 64 0 4 869 983 263 117 19 chr3 37258226 37258554 -122341229 - MTE2a LTR MaLR -14 405 46 4 869 223 318 35 12 chr3 37259336 37259422 -122340361 + CT-rich Low_complexity Low_complexity 4 91 0 4 869 797 154 73 7 chr3 37260389 37260526 -122339257 - B1_Mus1 SINE Alu 0 148 3 4 869 468 0 0 0 chr3 37260875 37260927 -122338856 + (TTTA)n Simple_repeat Simple_repeat 2 53 0 4 869 1251 28 0 0 chr3 37260930 37261071 -122338712 - B1_Mus2 SINE Alu -5 142 2 4 869 333 0 0 0 chr3 37261522 37261559 -122338224 + (TGAA)n Simple_repeat Simple_repeat 3 39 0 4 869 194 302 31 16 chr3 37261599 37261663 -122338120 - MIRb SINE MIR -73 195 131 4 869 553 156 80 229 chr3 37262220 37262395 -122337388 - B1_Mur4 SINE Alu -1 149 1 4 869 316 263 30 40 chr3 37262689 37262788 -122336995 - ORR1E LTR MaLR -17 362 265 4 869 2820 39 0 6 chr3 37262835 37263167 -122336616 - L1Md_F3 LINE L1 -138 6444 6115 4 869 706 97 8 16 chr3 37263167 37263293 -122336490 + L1Md_F3 LINE L1 6459 6583 -1 4 869 597 263 26 10 chr3 37263373 37263517 -122336266 - ORR1E LTR MaLR -229 141 4 4 869 2552 287 198 52 chr3 37263562 37264687 -122335096 - MTE-int LTR MaLR -277 1303 14 4 869 234 288 0 17 chr3 37264687 37264747 -122335036 + T-rich Low_complexity Low_complexity 2 60 0 4 869 447 137 0 0 chr3 37264749 37264822 -122334961 + (TC)n Simple_repeat Simple_repeat 1 73 0 4 869 324 318 14 64 chr3 37264830 37264971 -122334812 - B1F1 SINE Alu -15 134 1 4 869 394 256 138 13 chr3 37264985 37265120 -122334663 - MTEa LTR MaLR 0 379 233 4 869 1269 239 62 68 chr3 37265342 37265679 -122334104 + MTE2a LTR MaLR 39 373 -6 4 869 411 332 44 69 chr3 37266366 37266641 -122333142 + L4 LINE RTE 792 1059 -970 4 869 6430 68 7 23 chr3 37267332 37268199 -122331584 - Lx3_Mus LINE L1 -1 7008 6156 4 869 1236 75 12 6 chr3 37268203 37268376 -122331407 + Lx3_Mus LINE L1 5837 6010 -999 4 869 253 289 135 50 chr3 37269250 37269472 -122330311 - MLT2C1 LTR ERVL -3 394 154 4 869 447 211 12 12 chr3 37270264 37270416 -122329367 - Lx7 LINE L1 -321 5852 5676 4 869 1679 120 8 179 chr3 37270822 37271218 -122328565 + ORR1A4 LTR MaLR 1 328 -1 4 869 654 25 0 0 chr3 37272306 37272386 -122327397 + (CA)n Simple_repeat Simple_repeat 2 81 0 4 869 8469 112 62 10 chr3 37273091 37274923 -122324860 - Lx3C LINE L1 -5 6971 5039 4 869 798 283 74 7 chr3 37275266 37275609 -122324174 - L1MA8 LINE L1 -452 5839 5465 4 869 1731 194 30 14 chr3 37276103 37276469 -122323314 + ORR1D1 LTR MaLR 3 374 0 4 869 1475 233 79 38 chr3 37276551 37277123 -122322660 + RLTR26 LTR ERVK 2 642 0 4 869 263 267 85 71 chr3 37277164 37277305 -122322478 - MLT1F2 LTR MaLR -5 555 413 4 869 468 0 0 0 chr3 37277305 37277357 -122322426 + (CA)n Simple_repeat Simple_repeat 2 53 0 4 869 978 238 48 61 chr3 37278068 37278363 -122321420 - ORR1E LTR MaLR -41 318 28 4 869 563 237 6 0 chr3 37279920 37280097 -122319686 + (TG)n Simple_repeat Simple_repeat 1 178 0 4 869 1104 30 0 0 chr3 37280883 37281015 -122318768 + (CA)n Simple_repeat Simple_repeat 2 133 0 4 869 22 35 0 0 chr3 37281671 37281700 -122318083 + AT_rich Low_complexity Low_complexity 1 29 0 4 869 1381 189 109 33 chr3 37281831 37282160 -122317623 - ORR1E LTR MaLR -2 357 4 4 869 894 230 16 16 chr3 37282550 37282744 -122317039 + B3A SINE B2 5 198 0 4 869 674 215 46 0 chr3 37283136 37283266 -122316517 + B1_Mur1 SINE Alu 2 137 -12 4 869 465 252 8 54 chr3 37283931 37284061 -122315722 - RSINE1 SINE B4 -31 134 11 4 869 332 347 63 8 chr3 37284168 37284406 -122315377 - L1MD3 LINE L1 -15 7980 7730 4 869 276 209 25 57 chr3 37284491 37284613 -122315170 + (TATATG)n Simple_repeat Simple_repeat 1 118 0 4 869 369 17 17 33 chr3 37284721 37284781 -122315002 + (TTTTTG)n Simple_repeat Simple_repeat 1 59 0 4 869 2528 75 8 14 chr3 37284803 37285154 -122314629 - L1_Mus4 LINE L1 0 6636 6288 4 869 222 91 0 0 chr3 37285432 37285465 -122314318 + (TCTG)n Simple_repeat Simple_repeat 2 34 0 4 869 723 24 0 0 chr3 37285615 37285700 -122314083 + (TC)n Simple_repeat Simple_repeat 1 85 0 4 869 411 265 325 7 chr3 37286257 37286540 -122313243 + MTD LTR MaLR 1 372 -47 4 869 1587 144 136 12 chr3 37286531 37286854 -122312929 - ORR1C1 LTR MaLR -15 363 1 4 869 249 179 35 18 chr3 37286854 37286911 -122312872 + MTD LTR MaLR 362 419 0 4 869 604 237 125 10 chr3 37286989 37287181 -122312602 - B4 SINE B4 -74 218 5 4 869 1181 116 32 5 chr3 37287353 37287543 -122312240 + B2_Mm2 SINE B2 1 195 0 4 869 702 185 139 39 chr3 37287844 37288024 -122311759 + L1_Mur3 LINE L1 2060 2257 -3623 4 869 1906 81 84 39 chr3 37289512 37289845 -122309938 - RLTR10B2 LTR ERVK 0 365 18 4 869 239 86 0 0 chr3 37289866 37289901 -122309882 - RLTR10B2 LTR ERVK -249 43 9 4 869 296 48 0 0 chr3 37289909 37289951 -122309832 - RLTR10B2 LTR ERVK -250 42 1 4 869 610 118 11 0 chr3 37289951 37290044 -122309739 - MMERVK10C-int LTR ERVK 0 7581 7488 4 869 1551 38 32 0 chr3 37290048 37290234 -122309549 - B2_Mm1t SINE B2 0 193 2 4 869 306 83 0 0 chr3 37290234 37290277 -122309506 + (T)n Simple_repeat Simple_repeat 1 43 0 4 869 7213 48 0 30 chr3 37290277 37291172 -122308611 - MMERVK10C-int LTR ERVK -63 7518 6651 4 869 13147 42 2 0 chr3 37291163 37292687 -122307096 - MMERVK10C-int LTR ERVK -1771 5810 4284 4 869 4478 115 23 0 chr3 37292685 37293337 -122306446 - MMERVK10C-int LTR ERVK -3820 3761 3095 4 869 2550 69 0 0 chr3 37293609 37293926 -122305857 - MMERVK10C-int LTR ERVK -7264 317 1 4 869 1927 78 84 39 chr3 37293926 37294259 -122305524 - RLTR10B2 LTR ERVK 0 365 18 4 869 234 88 0 0 chr3 37294281 37294315 -122305468 - RLTR10B2 LTR ERVK -250 42 9 4 869 296 48 0 0 chr3 37294323 37294365 -122305418 - RLTR10B LTR ERVK -250 42 1 4 869 708 266 19 29 chr3 37294386 37294595 -122305188 - L1_Rod LINE L1 -93 5754 5548 4 869 425 193 22 7 chr3 37294817 37294953 -122304830 + (TG)n Simple_repeat Simple_repeat 1 138 0 4 869 249 135 0 0 chr3 37294956 37295008 -122304775 + (TC)n Simple_repeat Simple_repeat 2 53 0 4 869 222 335 112 9 chr3 37295568 37295741 -122304042 + MIRb SINE MIR 7 203 -59 4 869 498 217 72 104 chr3 37298487 37298708 -122301075 - RMER10A LTR ERVL -24 418 205 4 869 475 290 45 84 chr3 37298693 37298979 -122300804 - RMER10A LTR ERVL -156 286 12 4 869 353 277 20 0 chr3 37299304 37299405 -122300378 - B3 SINE B2 -30 186 84 4 869 294 141 66 23 chr3 37299409 37299485 -122300298 - Lx2B LINE L1 0 7058 6934 4 869 195 24 22 87 chr3 37299487 37299533 -122300250 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 4 869 636 190 254 3 chr3 37299544 37299768 -122300015 - Lx2B LINE L1 -3 6997 6713 4 869 189 94 0 0 chr3 37299784 37299816 -122299967 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 4 869 453 212 49 41 chr3 37299821 37299944 -122299839 - B4 SINE B4 -71 221 98 4 869 220 105 0 50 chr3 37299964 37300024 -122299759 + T-rich Low_complexity Low_complexity 1 57 0 4 869 754 205 7 20 chr3 37300024 37300173 -122299610 - B1_Mur1 SINE Alu 0 149 3 4 869 239 231 92 0 chr3 37300197 37300262 -122299521 - B4 SINE B4 -220 72 2 4 869 180 323 208 0 chr3 37301639 37301735 -122298048 - L2a LINE L2 -2 3424 3309 4 869 648 274 86 13 chr3 37301784 37302017 -122297766 - Lx8 LINE L1 -2 7471 7222 4 869 276 220 238 3 chr3 37302109 37302280 -122297503 - L1MC3 LINE L1 -903 6979 6767 4 869 282 270 28 89 chr3 37302337 37302516 -122297267 - L1MC3 LINE L1 -1152 6633 6466 4 869 272 152 0 0 chr3 37302517 37302563 -122297220 + ORR1C2 LTR MaLR 337 382 -2 4 869 639 271 21 7 chr3 37302648 37302789 -122296994 + B3 SINE B2 6 148 -68 4 869 210 37 0 0 chr3 37304435 37304462 -122295321 + (CA)n Simple_repeat Simple_repeat 2 28 0 4 869 235 225 62 12 chr3 37307369 37307450 -122292333 - PB1D10 SINE Alu -30 87 3 4 869 24 53 0 0 chr3 37308037 37308075 -122291708 + AT_rich Low_complexity Low_complexity 1 38 0 4 869 1146 50 7 0 chr3 37309140 37309280 -122290503 + B1_Mus2 SINE Alu 2 142 -5 4 869 611 225 107 25 chr3 37310538 37310734 -122289049 - B3 SINE B2 -4 212 1 4 869 216 255 0 19 chr3 37310737 37310789 -122288994 + C-rich Low_complexity Low_complexity 3 53 0 4 869 587 108 0 11 chr3 37311533 37311627 -122288156 + (TC)n Simple_repeat Simple_repeat 2 94 0 4 869 455 286 129 9 chr3 37311862 37312095 -122287688 - MLT1A0 LTR MaLR -70 295 35 4 869 728 222 82 0 chr3 37312460 37312654 -122287129 - B3 SINE B2 -6 210 1 4 869 245 314 0 0 chr3 37312847 37312917 -122286866 - L2a LINE L2 -17 3409 3340 4 869 671 248 26 0 chr3 37313048 37313201 -122286582 + B3A SINE B2 1 157 -41 4 869 438 65 0 0 chr3 37313210 37313272 -122286511 + (CA)n Simple_repeat Simple_repeat 1 62 0 4 869 227 222 19 0 chr3 37313759 37313813 -122285970 + (TCCA)n Simple_repeat Simple_repeat 4 58 0 4 869 474 256 288 52 chr3 37314046 37314267 -122285516 + B4A SINE B4 20 292 0 4 869 256 289 99 40 chr3 37316763 37316864 -122282919 + PB1D10 SINE Alu 3 109 -8 4 869 263 295 7 64 chr3 37318635 37318776 -122281007 + (CCCCG)n Simple_repeat Simple_repeat 4 136 0 4 869 25 65 0 0 chr3 37319499 37319545 -122280238 + GC_rich Low_complexity Low_complexity 1 46 0 4 869 182 286 120 28 chr3 37319920 37320028 -122279755 - MIRb SINE MIR -115 153 36 4 869 329 325 134 8 chr3 37320469 37320723 -122279060 + L2 LINE L2 1983 2268 -1151 4 869 279 267 108 10 chr3 37320951 37321053 -122278730 - MER5C DNA MER1_type -159 154 43 4 869 342 313 128 35 chr3 37322038 37322210 -122277573 + B4A SINE B4 50 237 -55 4 869 861 208 44 19 chr3 37322243 37322449 -122277334 - MTE2a LTR MaLR 0 379 169 4 869 221 263 18 0 chr3 37322521 37322578 -122277205 + RSINE1 SINE B4 79 136 -29 4 869 257 273 13 13 chr3 37322896 37322974 -122276809 - ID4 SINE ID -2 81 4 4 869 909 151 13 20 chr3 37323033 37323182 -122276601 - B1_Mus1 SINE Alu 0 148 1 5 869 496 239 18 18 chr3 37323815 37323926 -122275857 + B3A SINE B2 1 111 -87 5 869 812 285 37 8 chr3 37324354 37324595 -122275188 - B4 SINE B4 -36 256 9 5 869 765 238 104 21 chr3 37325230 37325423 -122274360 + B3 SINE B2 1 209 -7 5 869 183 139 0 0 chr3 37325479 37325515 -122274268 + (T)n Simple_repeat Simple_repeat 1 36 0 5 869 995 147 0 7 chr3 37325523 37325667 -122274116 - B1_Mur4 SINE Alu -5 145 3 5 869 265 250 80 0 chr3 37325683 37325783 -122274000 - Charlie5 DNA MER1_type -82 2542 2435 5 869 222 229 56 78 chr3 37325809 37325899 -122273884 - PB1D10 SINE Alu -1 116 29 5 869 207 0 0 0 chr3 37326662 37326685 -122273098 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 5 869 514 236 290 44 chr3 37326726 37327019 -122272764 - Lx8 LINE L1 -207 7266 6902 5 869 240 111 0 0 chr3 37327436 37327472 -122272311 + (TTTC)n Simple_repeat Simple_repeat 2 37 0 5 869 186 43 0 0 chr3 37327537 37327560 -122272223 + (TAAA)n Simple_repeat Simple_repeat 4 26 0 5 869 753 121 40 0 chr3 37327664 37327788 -122271995 + ORR1D1 LTR MaLR 37 165 -209 5 869 310 122 0 0 chr3 37328005 37328054 -122271729 - ORR1D1 LTR MaLR -294 80 32 5 869 21 36 0 0 chr3 37328562 37328590 -122271193 + AT_rich Low_complexity Low_complexity 1 28 0 5 869 762 114 228 0 chr3 37328591 37328749 -122271034 - B2_Mm2 SINE B2 -1 194 1 5 869 571 266 161 24 chr3 37329725 37329979 -122269804 - B4A SINE B4 -1 291 3 5 869 263 234 16 0 chr3 37330010 37330074 -122269709 - B3 SINE B2 -2 214 150 5 869 1176 75 0 0 chr3 37330342 37330489 -122269294 + B1_Mus1 SINE Alu 2 148 0 5 869 407 262 119 22 chr3 37332804 37333102 -122266681 - L1M3 LINE L1 -1030 5113 4732 5 869 887 204 35 15 chr3 37333122 37333321 -122266462 - B3 SINE B2 -6 210 8 5 869 980 271 35 102 chr3 37333424 37333826 -122265957 - MTE2a LTR MaLR 0 379 5 5 869 207 0 0 0 chr3 37333867 37333890 -122265893 + (TTTTTG)n Simple_repeat Simple_repeat 3 25 0 5 869 750 255 79 54 chr3 37333890 37334371 -122265412 - L1M3 LINE L1 -1507 4633 4141 5 869 426 245 118 12 chr3 37334434 37334595 -122265188 - L1M3 LINE L1 -1977 4163 3986 5 869 1189 54 7 0 chr3 37335089 37335236 -122264547 - B1_Mus1 SINE Alu 0 148 1 5 869 413 252 139 0 chr3 37335945 37336060 -122263723 + ID_B1 SINE B4 84 214 -10 5 869 227 354 0 0 chr3 37336353 37336435 -122263348 - MIR3 SINE MIR -3 205 124 5 869 562 305 26 13 chr3 37337080 37337236 -122262547 + RSINE1 SINE B4 1 158 -7 5 869 832 172 14 7 chr3 37337491 37337637 -122262146 - B1_Mus1 SINE Alu -1 147 1 5 869 216 0 0 0 chr3 37337776 37337800 -122261983 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 5 869 1139 37 0 0 chr3 37337837 37337972 -122261811 - B1_Mus1 SINE Alu -13 135 1 5 869 666 313 64 68 chr3 37338618 37338925 -122260858 - B4 SINE B4 -11 281 1 5 869 222 37 0 0 chr3 37339750 37339777 -122260006 + (T)n Simple_repeat Simple_repeat 1 27 0 5 869 1282 14 0 0 chr3 37339777 37339924 -122259859 - B1_Mm SINE Alu 0 147 1 5 869 498 252 60 9 chr3 37340105 37340221 -122259562 - B3A SINE B2 -75 123 2 5 869 21 57 0 0 chr3 37340462 37340497 -122259286 + AT_rich Low_complexity Low_complexity 1 35 0 5 869 779 245 57 0 chr3 37340762 37340954 -122258829 - B3 SINE B2 -11 205 3 5 869 4679 124 85 1 chr3 37341606 37342358 -122257425 - Lx4A LINE L1 -1 7057 6243 5 869 23 78 0 0 chr3 37343057 37343108 -122256675 + AT_rich Low_complexity Low_complexity 1 51 0 5 869 2153 173 34 5 chr3 37343144 37343522 -122256261 - ORR1B1 LTR MaLR -5 389 1 5 869 26 30 0 0 chr3 37343892 37343925 -122255858 + AT_rich Low_complexity Low_complexity 1 33 0 5 869 314 338 169 42 chr3 37343925 37344067 -122255716 - RSINE1 SINE B4 0 165 6 5 869 306 314 94 56 chr3 37345132 37345399 -122254384 - L1M5 LINE L1 -783 5363 5087 5 869 320 224 45 0 chr3 37345406 37345473 -122254310 + ID4_ SINE ID 4 73 -10 5 869 452 117 0 13 chr3 37345839 37345917 -122253866 + (TCTCCC)n Simple_repeat Simple_repeat 3 79 0 5 869 739 228 92 19 chr3 37346077 37346283 -122253500 - B4A SINE B4 -18 274 54 5 869 630 295 102 47 chr3 37346259 37346494 -122253289 - RCHARR1 DNA MER1_type -724 250 3 5 869 487 50 0 48 chr3 37347863 37347947 -122251836 - L1Md_F3 LINE L1 -3 6581 6502 5 869 393 243 10 0 chr3 37347947 37348050 -122251733 - L1MD1 LINE L1 -285 5957 5854 5 869 907 125 0 7 chr3 37348072 37348217 -122251566 + URR1A DNA MER1_type 81 224 -2 5 869 483 63 0 0 chr3 37348248 37348311 -122251472 + (TG)n Simple_repeat Simple_repeat 2 64 0 5 869 531 279 128 16 chr3 37349749 37350080 -122249703 + Lx9 LINE L1 6622 7136 -508 5 869 381 301 165 0 chr3 37350079 37350328 -122249455 + Lx9 LINE L1 7337 7626 -18 5 869 264 120 0 0 chr3 37350862 37350912 -122248871 + (T)n Simple_repeat Simple_repeat 1 50 0 5 869 767 66 0 9 chr3 37351683 37351790 -122247993 + (TTTTC)n Simple_repeat Simple_repeat 4 109 0 5 869 273 57 0 0 chr3 37351790 37351825 -122247958 + (TTCC)n Simple_repeat Simple_repeat 4 38 0 5 869 21 0 0 0 chr3 37351825 37351846 -122247937 + AT_rich Low_complexity Low_complexity 1 21 0 5 869 26 0 0 0 chr3 37352457 37352483 -122247300 + AT_rich Low_complexity Low_complexity 1 26 0 5 869 27 73 0 0 chr3 37352518 37352573 -122247210 + AT_rich Low_complexity Low_complexity 1 55 0 5 869 391 344 26 0 chr3 37354113 37354264 -122245519 - Tigger6a DNA MER2_type -2 1081 927 5 869 27 62 0 0 chr3 37354846 37354894 -122244889 + AT_rich Low_complexity Low_complexity 1 48 0 5 870 252 308 116 47 chr3 37356810 37357042 -122242741 - MIRb SINE MIR -11 257 10 5 870 486 45 0 0 chr3 37357599 37357665 -122242118 + L1_Mus2 LINE L1 6501 6566 0 5 870 247 250 37 12 chr3 37358120 37358201 -122241582 - ID4_ SINE ID 0 83 1 5 870 24 0 0 0 chr3 37358804 37358828 -122240955 + AT_rich Low_complexity Low_complexity 1 24 0 5 870 26 0 0 0 chr3 37360128 37360154 -122239629 + AT_rich Low_complexity Low_complexity 1 26 0 5 870 2050 63 11 0 chr3 37360215 37360483 -122239300 - L1_Mus2 LINE L1 -397 6169 5899 5 870 3130 72 2 2 chr3 37360483 37360887 -122238896 + L1_Mus2 LINE L1 6162 6565 -1 5 870 21 57 0 0 chr3 37360897 37360932 -122238851 + AT_rich Low_complexity Low_complexity 1 35 0 5 870 418 165 20 10 chr3 37361428 37361504 -122238279 + CT-rich Low_complexity Low_complexity 25 102 0 5 870 1230 100 0 0 chr3 37361504 37361684 -122238099 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 5 870 418 165 20 10 chr3 37361684 37361705 -122238078 + polypyrimidine Low_complexity Low_complexity 4 24 0 5 870 22 35 0 0 chr3 37362097 37362126 -122237657 + AT_rich Low_complexity Low_complexity 1 29 0 5 870 291 28 0 0 chr3 37362177 37362213 -122237570 + (TTG)n Simple_repeat Simple_repeat 1 36 0 5 870 270 95 0 0 chr3 37362876 37362918 -122236865 + (TG)n Simple_repeat Simple_repeat 2 43 0 5 870 717 307 168 3 chr3 37363708 37364041 -122235742 - MER70B LTR ERVL -182 396 9 5 870 1399 190 58 2 chr3 37364688 37364945 -122234838 + MTC LTR MaLR 154 417 -4 5 870 669 263 131 53 chr3 37364976 37365580 -122234203 - L1_Rod LINE L1 -256 5627 4987 5 870 306 129 100 0 chr3 37365595 37365665 -122234118 - Lx9 LINE L1 -1 7643 7567 5 870 781 192 27 0 chr3 37365698 37365844 -122233939 - Lx9 LINE L1 -179 7465 7316 5 870 1213 264 51 22 chr3 37365842 37366349 -122233434 - L1M2 LINE L1 -1135 5008 4464 5 870 213 295 104 83 chr3 37366396 37366492 -122233291 - B1_Mus1 SINE Alu -32 116 19 5 870 337 161 0 0 chr3 37367671 37367727 -122232056 + B3 SINE B2 159 214 -2 5 870 1613 31 0 21 chr3 37367757 37367951 -122231832 + B2_Mm1t SINE B2 1 190 -3 5 870 195 100 0 0 chr3 37367955 37367985 -122231798 + (GAAAA)n Simple_repeat Simple_repeat 3 32 0 5 870 320 218 88 29 chr3 37368152 37368289 -122231494 + Lx4B LINE L1 6911 7055 -3 5 870 180 0 0 0 chr3 37368327 37368347 -122231436 + (CAA)n Simple_repeat Simple_repeat 2 21 0 5 870 565 234 225 17 chr3 37368874 37369052 -122230731 + B3 SINE B2 2 216 0 5 870 262 270 91 12 chr3 37370227 37370336 -122229447 + L2a LINE L2 3226 3392 -34 5 870 291 257 0 28 chr3 37370493 37370565 -122229218 - PB1D7 SINE Alu 0 120 51 5 870 924 70 0 0 chr3 37370670 37370798 -122228985 - B1_Mus1 SINE Alu -1 147 20 5 870 23 33 0 0 chr3 37373142 37373172 -122226611 + AT_rich Low_complexity Low_complexity 1 30 0 5 870 411 254 45 76 chr3 37373276 37373408 -122226375 + B4 SINE B4 72 199 -93 5 870 903 84 0 22 chr3 37373304 37373438 -122226345 + B1_Mus1 SINE Alu 6 136 -12 5 870 216 0 0 0 chr3 37373439 37373463 -122226320 + (CAAA)n Simple_repeat Simple_repeat 3 26 0 5 870 255 253 98 11 chr3 37373811 37373903 -122225880 - MIR SINE MIR -89 173 74 5 870 250 261 0 0 chr3 37374056 37374121 -122225662 - L1MC2 LINE L1 -406 5938 5874 5 870 359 0 43 0 chr3 37374312 37374358 -122225425 + (TTTC)n Simple_repeat Simple_repeat 1 48 0 5 870 561 306 200 47 chr3 37374358 37375099 -122224684 - L1MD LINE L1 -2869 3277 2424 5 870 25 0 0 0 chr3 37376453 37376478 -122223305 + AT_rich Low_complexity Low_complexity 1 25 0 5 870 868 126 35 0 chr3 37378312 37378455 -122221328 + URR1A DNA MER1_type 79 226 0 5 870 557 298 117 0 chr3 37378806 37378994 -122220789 + ID_B1 SINE B4 3 212 -12 5 870 961 75 82 7 chr3 37379099 37379234 -122220549 + B1_Mus2 SINE Alu 1 145 -2 5 870 234 0 0 0 chr3 37379239 37379265 -122220518 + (A)n Simple_repeat Simple_repeat 1 26 0 5 870 1110 79 60 12 chr3 37380068 37380235 -122219548 - B2_Mm2 SINE B2 -7 188 14 6 870 3228 64 28 17 chr3 37380237 37380700 -122219083 + LSU-rRNA_Hsa rRNA rRNA 1340 1807 -3228 6 870 23 33 0 0 chr3 37382080 37382110 -122217673 + AT_rich Low_complexity Low_complexity 1 30 0 6 870 513 273 0 75 chr3 37382140 37382314 -122217469 - RSINE1 SINE B4 -2 163 3 6 870 24 0 0 0 chr3 37382483 37382507 -122217276 + AT_rich Low_complexity Low_complexity 1 24 0 6 870 198 71 0 0 chr3 37382658 37382686 -122217097 + (TG)n Simple_repeat Simple_repeat 2 29 0 6 870 369 75 0 36 chr3 37382730 37382785 -122216998 + ORR1A4 LTR MaLR 269 321 -8 6 870 2419 30 0 7 chr3 37383970 37384267 -122215516 - L1Md_F2 LINE L1 -12 6570 6276 6 870 1006 301 88 20 chr3 37384270 37384701 -122215082 + MTE-int LTR MaLR 28 461 -909 6 870 953 304 67 51 chr3 37386615 37387045 -122212738 - RMER5 LTR ERV1 0 534 98 6 870 261 292 225 0 chr3 37387055 37387175 -122212608 - MER104 DNA Tc2 -34 147 1 6 870 1003 78 0 0 chr3 37387672 37387813 -122211970 + L1_Mus1 LINE L1 6427 6567 0 6 870 966 54 70 0 chr3 37387998 37388127 -122211656 + B1_Mm SINE Alu 1 138 -9 6 870 189 74 0 0 chr3 37388127 37388154 -122211629 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 6 870 225 0 0 0 chr3 37389565 37389590 -122210193 + (TCTG)n Simple_repeat Simple_repeat 3 27 0 6 870 219 333 66 26 chr3 37391638 37391789 -122207994 + MIRb SINE MIR 64 220 -48 6 870 396 0 0 0 chr3 37394819 37394863 -122204920 + (CA)n Simple_repeat Simple_repeat 2 45 0 6 870 243 146 0 0 chr3 37395514 37395555 -122204228 + (GGA)n Simple_repeat Simple_repeat 3 43 0 6 870 810 319 15 59 chr3 37396037 37396307 -122203476 - B4A SINE B4 -6 286 29 6 870 571 240 95 20 chr3 37396466 37396666 -122203117 + B3 SINE B2 2 216 0 6 870 486 264 65 92 chr3 37396823 37396971 -122202812 - ID_B1 SINE B4 0 224 83 6 870 182 37 0 36 chr3 37396971 37396999 -122202784 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 6 870 486 264 65 92 chr3 37396999 37397079 -122202704 - ID SINE ID -142 82 2 6 870 684 245 20 20 chr3 37397142 37397292 -122202491 + RSINE1 SINE B4 3 152 -13 6 870 292 318 165 17 chr3 37397151 37397327 -122202456 + B3 SINE B2 11 212 -4 6 870 280 279 39 97 chr3 37397532 37397635 -122202148 - PB1D7 SINE Alu -7 113 17 6 870 1017 257 84 84 chr3 37397717 37398087 -122201696 + ORR1D2 LTR MaLR 1 370 0 6 870 270 323 30 50 chr3 37398096 37398197 -122201586 + PB1D7 SINE Alu 1 99 -21 6 870 33 0 0 0 chr3 37398197 37398230 -122201553 + AT_rich Low_complexity Low_complexity 1 33 0 6 870 793 245 73 10 chr3 37399201 37399407 -122200376 + ID_B1 SINE B4 5 223 -1 6 870 32 75 0 0 chr3 37400879 37400946 -122198837 + AT_rich Low_complexity Low_complexity 1 67 0 6 870 31 58 0 0 chr3 37402638 37402690 -122197093 + AT_rich Low_complexity Low_complexity 1 52 0 6 870 702 306 142 28 chr3 37403239 37403592 -122196191 - Lx7 LINE L1 -376 7320 6928 6 870 408 308 77 84 chr3 37403620 37403907 -122195876 - MLT1D LTR MaLR -103 402 118 6 870 228 321 85 0 chr3 37403919 37404025 -122195758 - L1MD LINE L1 -636 5606 5492 6 870 350 200 90 16 chr3 37404072 37404194 -122195589 - L1MD LINE L1 -757 5389 5259 6 870 457 224 0 128 chr3 37404231 37404364 -122195419 + B3 SINE B2 100 215 -1 6 870 242 196 0 0 chr3 37405999 37406045 -122193738 - ID_B1 SINE B4 -2 222 177 6 870 266 260 0 0 chr3 37406050 37406100 -122193683 + PB1D10 SINE Alu 31 80 -37 6 870 275 241 36 48 chr3 37406140 37406223 -122193560 + ID4 SINE ID 2 83 0 6 870 371 323 87 0 chr3 37406223 37406410 -122193373 + L1M2 LINE L1 4362 4565 -1578 6 870 273 317 0 0 chr3 37406678 37406760 -122193023 + L1M4 LINE L1 5033 5114 -1032 6 870 310 164 44 0 chr3 37407015 37407084 -122192699 - B1F2 SINE Alu -30 87 12 6 870 237 329 27 0 chr3 37407021 37407094 -122192689 - B4A SINE B4 -131 161 87 6 870 1579 159 4 7 chr3 37407127 37407447 -122192336 - Lx5 LINE L1 -2 7048 6657 6 870 2703 152 53 23 chr3 37407449 37408223 -122191560 + Lx5 LINE L1 5771 6632 -418 6 870 3558 164 154 75 chr3 37408855 37409691 -122190092 + RMER19B LTR ERVK 1 902 0 6 870 752 147 62 0 chr3 37410619 37410748 -122189035 + MTC LTR MaLR 227 363 -58 6 870 233 245 57 0 chr3 37411678 37411731 -122188052 - B4A SINE B4 -9 283 228 6 870 234 91 0 0 chr3 37411732 37411765 -122188018 + (TATG)n Simple_repeat Simple_repeat 2 34 0 6 870 241 167 62 0 chr3 37411903 37411951 -122187832 - B4A SINE B4 -60 232 182 6 870 283 346 33 0 chr3 37412206 37412359 -122187424 - L1MB1 LINE L1 -140 6049 5892 6 870 181 300 41 41 chr3 37412458 37412531 -122187252 - L2b LINE L2 -202 3173 3101 6 870 258 156 0 0 chr3 37413350 37413395 -122186388 + (TA)n Simple_repeat Simple_repeat 2 46 0 6 870 216 0 0 0 chr3 37413680 37413704 -122186079 + (CA)n Simple_repeat Simple_repeat 1 24 0 6 870 1623 171 132 44 chr3 37414410 37414805 -122184978 - RMER1B Other Other -338 728 242 6 870 262 358 74 0 chr3 37415206 37415301 -122184482 + MIRb SINE MIR 8 109 -159 6 870 774 311 45 52 chr3 37415833 37416124 -122183659 + B4 SINE B4 4 292 0 6 870 203 300 0 0 chr3 37417068 37417118 -122182665 + L2a LINE L2 3352 3401 -25 6 870 486 0 0 0 chr3 37417895 37417949 -122181834 + (TAAA)n Simple_repeat Simple_repeat 1 54 0 6 870 1690 195 48 17 chr3 37418065 37418419 -122181364 + ORR1D1 LTR MaLR 2 366 -8 6 870 441 0 0 0 chr3 37418420 37418469 -122181314 + (TG)n Simple_repeat Simple_repeat 2 50 0 6 870 378 336 29 0 chr3 37418489 37418593 -122181190 - RSINE1 SINE B4 -46 119 13 6 870 2919 53 42 10 chr3 37418716 37419100 -122180683 - MTA_Mm LTR MaLR 0 396 1 6 870 182 328 107 21 chr3 37419713 37419853 -122179930 - L2c LINE L2 -16 3371 3220 6 870 243 61 0 0 chr3 37420141 37420174 -122179609 + (GTTTG)n Simple_repeat Simple_repeat 2 34 0 6 870 291 303 79 20 chr3 37420178 37420279 -122179504 - PB1D7 SINE Alu -13 107 1 6 870 536 254 28 6 chr3 37420874 37421052 -122178731 + L1MB3 LINE L1 5785 5966 -217 6 870 375 188 0 0 chr3 37421296 37421365 -122178418 + Lx7 LINE L1 7276 7344 -352 6 870 30 0 0 0 chr3 37421375 37421405 -122178378 + AT_rich Low_complexity Low_complexity 1 30 0 6 870 5182 53 5 0 chr3 37421406 37422050 -122177733 - L1Md_F2 LINE L1 -2 6580 5934 6 870 235 220 0 0 chr3 37422219 37422269 -122177514 + (CTTTG)n Simple_repeat Simple_repeat 2 51 0 6 870 434 199 6 35 chr3 37422280 37422412 -122177371 + B3A SINE B2 95 216 0 6 870 543 193 31 109 chr3 37423105 37423233 -122176550 + MTE2b LTR MaLR 6 123 -256 6 870 702 250 68 31 chr3 37423269 37423595 -122176188 - RLTR15 LTR ERVK -21 338 1 6 870 227 189 125 42 chr3 37423595 37423646 -122176137 + MTE2b LTR MaLR 209 265 -114 6 870 253 272 181 16 chr3 37423891 37424134 -122175649 - L1MEf LINE L1 -1469 4677 4395 6 870 541 305 65 33 chr3 37424393 37424872 -122174911 - L1MEf LINE L1 -2087 4059 3566 6 870 343 285 103 62 chr3 37425149 37425266 -122174517 - L1MEf LINE L1 -4549 1693 1567 6 870 234 0 0 0 chr3 37425266 37425292 -122174491 + (TTG)n Simple_repeat Simple_repeat 2 27 0 6 870 343 285 103 62 chr3 37425292 37425417 -122174366 - L1MEf LINE L1 -4676 1566 1442 6 870 324 217 42 32 chr3 37425657 37425752 -122174031 - RMER4B LTR ERVK -482 103 8 6 870 344 230 161 19 chr3 37425910 37426065 -122173718 - L1MEf LINE L1 -4965 1277 1101 6 870 251 284 118 0 chr3 37426386 37426488 -122173295 - L1MB8 LINE L1 -2 6176 6063 6 870 23 0 0 0 chr3 37426755 37426778 -122173005 + AT_rich Low_complexity Low_complexity 1 23 0 6 870 283 250 0 16 chr3 37427267 37427328 -122172455 + tRNA-Ala-GCY_ tRNA tRNA 4 63 -12 6 870 270 186 186 0 chr3 37428039 37428098 -122171685 - ID4_ SINE ID -13 70 1 6 870 396 16 0 47 chr3 37428654 37428718 -122171065 + (TGGA)n Simple_repeat Simple_repeat 2 62 0 6 870 270 0 0 0 chr3 37428719 37428749 -122171034 + (TTGG)n Simple_repeat Simple_repeat 2 31 0 6 870 1254 161 4 18 chr3 37429243 37429471 -122170312 + URR1B DNA MER1_type 1 225 0 6 870 271 294 12 0 chr3 37429479 37429564 -122170219 - L1MB4 LINE L1 -182 5998 5913 6 870 201 207 0 33 chr3 37429758 37429818 -122169965 + T-rich Low_complexity Low_complexity 1 58 0 6 870 305 224 67 0 chr3 37430017 37430128 -122169655 + L1_Rod LINE L1 4708 4839 -1041 6 870 207 0 0 0 chr3 37430372 37430395 -122169388 + (TGG)n Simple_repeat Simple_repeat 3 25 0 6 870 263 303 113 44 chr3 37430406 37430565 -122169218 - Charlie15a DNA MER1_type -1 223 54 6 870 10233 154 92 36 chr3 37431889 37432090 -122167693 - L1_Mur3 LINE L1 -1032 4848 4633 6 870 257 0 0 29 chr3 37432090 37432124 -122167659 + (GTTTG)n Simple_repeat Simple_repeat 2 34 0 6 870 10233 154 92 36 chr3 37432124 37432947 -122166836 - L1_Mur3 LINE L1 -1248 4632 3824 6 870 2104 132 93 0 chr3 37432947 37433281 -122166502 - ORR1B2 LTR MaLR 0 367 3 6 870 10233 154 92 36 chr3 37433281 37434530 -122165253 - L1_Mur3 LINE L1 -2057 3823 2446 6 870 24524 146 32 29 chr3 37434532 37440003 -122159780 - L1VL2 LINE L1 0 5883 400 6 870 3552 153 75 14 chr3 37440004 37440817 -122158966 - L1_Mur3 LINE L1 -3857 2023 1158 6 870 1201 206 48 22 chr3 37440807 37441164 -122158619 - L1_Mur3 LINE L1 -6507 1221 856 6 870 339 344 22 48 chr3 37441212 37441441 -122158342 - L1_Mur3 LINE L1 -7071 657 435 6 870 726 74 0 18 chr3 37442289 37442399 -122157384 - B1_Mm SINE Alu 0 147 40 6 870 275 265 151 0 chr3 37442399 37442512 -122157271 - MIR SINE MIR -123 145 16 6 870 2002 230 29 126 chr3 37442849 37443461 -122156322 + ORR1D2-int LTR MaLR 818 1370 0 6 870 1162 238 106 34 chr3 37443484 37443776 -122156007 + ORR1D2 LTR MaLR 56 368 -2 6 870 334 205 0 13 chr3 37444622 37444701 -122155082 + ID_B1 SINE B4 146 223 -1 6 870 1206 250 134 6 chr3 37445139 37445453 -122154330 - MTEa LTR MaLR -8 371 18 6 870 26 30 0 0 chr3 37446690 37446723 -122153060 + AT_rich Low_complexity Low_complexity 1 33 0 6 870 300 189 39 51 chr3 37447714 37447792 -122151991 + B1_Mus2 SINE Alu 71 147 0 6 870 557 264 132 20 chr3 37447809 37448006 -122151777 + ID_B1 SINE B4 6 224 0 6 870 646 167 92 0 chr3 37448132 37448252 -122151531 + B1_Mm SINE Alu 4 134 -13 6 870 29 0 0 0 chr3 37448261 37448290 -122151493 + AT_rich Low_complexity Low_complexity 1 29 0 6 870 22 0 0 0 chr3 37448747 37448769 -122151014 + AT_rich Low_complexity Low_complexity 1 22 0 7 870 901 243 0 5 chr3 37449619 37449822 -122149961 - B3 SINE B2 -10 206 5 7 870 213 258 181 46 chr3 37450012 37450155 -122149628 + MIRc SINE MIR 52 220 -48 7 870 352 335 29 62 chr3 37450241 37450415 -122149368 - MLT1D LTR MaLR -8 497 328 7 870 198 0 0 0 chr3 37450415 37450437 -122149346 + (TTTG)n Simple_repeat Simple_repeat 3 24 0 7 870 352 325 26 62 chr3 37450437 37450685 -122149098 - MLT1D LTR MaLR -178 327 40 7 870 185 65 32 0 chr3 37450830 37450861 -122148922 + (TTTTG)n Simple_repeat Simple_repeat 3 34 0 7 870 442 241 111 15 chr3 37451138 37451273 -122148510 - B1_Mur2 SINE Alu 0 149 2 7 870 601 237 23 109 chr3 37451598 37451863 -122147920 + L1MC1 LINE L1 5725 5966 -367 7 870 236 267 174 0 chr3 37452013 37452099 -122147684 + ORR1E LTR MaLR 97 197 -162 7 870 318 303 98 49 chr3 37452264 37452469 -122147314 + L1MC1 LINE L1 6116 6330 -3 7 870 474 256 68 23 chr3 37453679 37453855 -122145928 + MER58B DNA MER1_type 13 196 -145 7 870 201 196 22 0 chr3 37453973 37454019 -122145764 + (CA)n Simple_repeat Simple_repeat 2 48 0 7 870 1043 97 28 0 chr3 37454268 37454412 -122145371 - B1_Mus1 SINE Alu 0 148 1 7 870 309 26 0 0 chr3 37454431 37454469 -122145314 + (TTG)n Simple_repeat Simple_repeat 2 39 0 7 870 1245 21 0 0 chr3 37454475 37454617 -122145166 - B1_Mm SINE Alu -5 142 1 7 870 515 177 165 17 chr3 37454646 37454761 -122145022 - B1_Mur1 SINE Alu -17 132 1 7 870 340 277 0 0 chr3 37456706 37456789 -122142994 + RMER30 DNA MER1_type 5 87 -115 7 870 760 251 48 19 chr3 37456803 37457010 -122142773 + B4A SINE B4 36 248 -44 7 870 229 306 16 0 chr3 37457096 37457158 -122142625 + RMER30 DNA MER1_type 137 199 -3 7 870 1627 57 0 0 chr3 37458010 37458202 -122141581 - B2_Mm1t SINE B2 0 193 2 7 870 592 200 104 0 chr3 37458302 37458437 -122141346 - B1_Mur1 SINE Alu 0 149 1 7 870 593 246 37 7 chr3 37458470 37458605 -122141178 + RSINE1 SINE B4 2 140 -25 7 870 468 280 57 127 chr3 37458642 37459136 -122140647 - RLTR11A2 LTR ERVK -41 487 1 7 870 360 0 0 0 chr3 37459158 37459198 -122140585 + (CA)n Simple_repeat Simple_repeat 2 41 0 7 870 231 155 69 0 chr3 37460284 37460342 -122139441 - B3 SINE B2 -4 212 151 7 870 274 250 132 18 chr3 37461038 37461152 -122138631 + L1MC4a LINE L1 5803 5929 -1953 7 870 227 271 51 0 chr3 37461193 37461252 -122138531 + B1F2 SINE Alu 1 62 -87 7 870 23 33 0 0 chr3 37461302 37461332 -122138451 + AT_rich Low_complexity Low_complexity 1 30 0 7 870 1222 48 0 0 chr3 37461332 37461479 -122138304 - B1_Mus2 SINE Alu 0 147 1 7 870 225 94 0 0 chr3 37461932 37461964 -122137819 + (CCCCCT)n Simple_repeat Simple_repeat 1 32 0 7 870 207 146 0 0 chr3 37461987 37462028 -122137755 + (TCTG)n Simple_repeat Simple_repeat 4 44 0 7 870 21 0 0 0 chr3 37462296 37462317 -122137466 + AT_rich Low_complexity Low_complexity 1 21 0 7 870 236 279 206 28 chr3 37463065 37463172 -122136611 + PB1 SINE Alu 1 126 -1 7 870 447 98 313 26 chr3 37463846 37463961 -122135822 - B2_Mm2 SINE B2 -1 194 47 7 870 917 182 7 12 chr3 37464857 37465047 -122134736 + B2_Mm2 SINE B2 1 191 -2 7 870 475 304 73 100 chr3 37465684 37465899 -122133884 + B4A SINE B4 1 227 -65 7 870 847 197 169 5 chr3 37465899 37466083 -122133700 + B3 SINE B2 2 215 -1 7 870 475 304 73 100 chr3 37466083 37466167 -122133616 + B4A SINE B4 228 292 0 7 870 309 261 72 0 chr3 37467498 37467594 -122132189 + B1F1 SINE Alu 7 110 -10 7 870 296 143 27 67 chr3 37468533 37468608 -122131175 - B1F SINE Alu 0 149 78 7 870 864 227 52 0 chr3 37469531 37469725 -122130058 + ID_B1 SINE B4 4 207 -17 7 870 379 257 190 14 chr3 37469857 37469999 -122129784 + B3 SINE B2 16 182 -34 7 870 349 214 10 10 chr3 37470037 37470048 -122129735 + polypurine Low_complexity Low_complexity 2 12 0 7 870 950 137 0 0 chr3 37470048 37470187 -122129596 + B1_Mus2 SINE Alu 3 141 -6 7 870 349 214 10 10 chr3 37470187 37470274 -122129509 + GA-rich Low_complexity Low_complexity 13 100 0 7 870 261 0 0 0 chr3 37471549 37471578 -122128205 + (TTTG)n Simple_repeat Simple_repeat 3 31 0 7 870 699 229 36 0 chr3 37472802 37472942 -122126841 + RSINE1 SINE B4 10 154 -11 7 870 431 333 42 16 chr3 37473183 37473375 -122126408 - MLT1A0 LTR MaLR -155 210 14 7 870 619 255 22 7 chr3 37473573 37473711 -122126072 - RSINE1 SINE B4 -22 143 4 7 870 516 106 0 0 chr3 37473712 37473806 -122125977 + (TCTG)n Simple_repeat Simple_repeat 1 94 0 7 870 717 12 0 0 chr3 37475353 37475435 -122124348 + (GA)n Simple_repeat Simple_repeat 1 82 0 7 870 2784 192 156 93 chr3 37476093 37476902 -122122881 - RMER13A LTR ERVK 0 860 1 7 870 1217 182 208 29 chr3 37477109 37477494 -122122289 + Lx9 LINE L1 7191 7644 0 7 870 241 132 0 70 chr3 37477512 37477569 -122122214 - B1_Mus2 SINE Alu -1 146 94 7 870 570 284 25 64 chr3 37478177 37478380 -122121403 - ID_B1 SINE B4 -29 195 1 7 870 603 283 46 0 chr3 37478654 37478806 -122120977 + RSINE1 SINE B4 1 159 -6 7 870 435 270 63 35 chr3 37479158 37479300 -122120483 + ID_B1 SINE B4 79 224 0 7 870 496 221 0 9 chr3 37481020 37481125 -122118658 - PB1D7 SINE Alu 0 120 17 7 870 3460 3 12 37 chr3 37481265 37481671 -122118112 + MTA_Mm LTR MaLR 1 396 0 7 870 849 93 85 85 chr3 37481856 37482020 -122117763 + B2_Mm2 SINE B2 1 164 -31 7 870 895 26 0 0 chr3 37482036 37482151 -122117632 - B1_Mm SINE Alu 0 147 33 7 870 1136 49 0 20 chr3 37482622 37482768 -122117015 + B1_Mus2 SINE Alu 5 147 0 7 870 254 207 171 79 chr3 37483438 37483590 -122116193 + MLT1D LTR MaLR 340 505 0 7 870 239 267 146 19 chr3 37484488 37484591 -122115192 - RSINE1 SINE B4 -49 116 1 7 108 1026 108 14 0 chr3 37486488 37486636 -122113147 - B1_Mur4 SINE Alu 0 150 1 7 871 5438 76 26 22 chr3 37486928 37487684 -122112099 + L1Md_F2 LINE L1 5824 6582 0 7 871 309 261 189 0 chr3 37488119 37488230 -122111553 + B1F2 SINE Alu 3 134 -15 7 871 369 316 25 25 chr3 37488482 37488644 -122111139 - MLT1B LTR MaLR -228 162 1 7 871 227 241 125 11 chr3 37488859 37488947 -122110836 - RMER1C Other Other 0 1342 1245 7 871 3836 253 82 37 chr3 37488874 37489090 -122110693 - Lx8 LINE L1 -1 7472 7239 7 871 1185 41 7 7 chr3 37489090 37489237 -122110546 + B1_Mus1 SINE Alu 2 148 0 7 871 3836 253 82 37 chr3 37489237 37490261 -122109522 - Lx8 LINE L1 -235 7238 6176 7 871 1317 220 145 28 chr3 37490242 37490676 -122109107 + L1_Mur3 LINE L1 4296 4780 -1100 7 871 372 212 253 13 chr3 37490804 37490962 -122108821 + RMER21B LTR ERV1 348 543 -299 7 871 689 340 14 3 chr3 37491037 37491320 -122108463 + L1M2 LINE L1 4814 5099 -1044 7 871 312 287 87 47 chr3 37491444 37491594 -122108189 + B4A SINE B4 8 163 -129 7 871 255 61 0 0 chr3 37491706 37491739 -122108044 + (CA)n Simple_repeat Simple_repeat 1 33 0 7 871 962 210 143 50 chr3 37492189 37492510 -122107273 - ORR1D2 LTR MaLR 0 370 20 7 871 644 238 62 62 chr3 37493783 37493857 -122105926 - B4 SINE B4 0 292 224 7 871 441 0 0 0 chr3 37493857 37493906 -122105877 + (TTTG)n Simple_repeat Simple_repeat 1 49 0 7 871 644 238 62 62 chr3 37493906 37494122 -122105661 - B4 SINE B4 -69 223 4 7 871 462 79 0 0 chr3 37494141 37494204 -122105579 + (TG)n Simple_repeat Simple_repeat 1 63 0 7 871 278 50 0 24 chr3 37494522 37494563 -122105220 + (TTTTG)n Simple_repeat Simple_repeat 3 42 0 7 871 192 298 144 0 chr3 37494702 37494806 -122104977 - L3 LINE CR1 -2195 2294 2176 7 871 199 333 21 28 chr3 37495012 37495059 -122104724 - MIR SINE MIR -87 175 131 7 871 222 37 0 0 chr3 37495059 37495086 -122104697 + (TGGGGG)n Simple_repeat Simple_repeat 4 30 0 7 871 199 333 21 28 chr3 37495086 37495180 -122104603 - MIR SINE MIR -132 130 35 7 871 1050 158 47 22 chr3 37496182 37496521 -122103262 + RMER10A LTR ERVL 1 438 -4 7 871 1251 34 0 0 chr3 37496853 37496999 -122102784 - B1_Mus1 SINE Alu 0 148 3 7 871 439 255 127 24 chr3 37497178 37497343 -122102440 - ORR1E LTR MaLR -169 190 9 7 871 431 191 32 11 chr3 37497707 37497802 -122101981 - B1_Mur1 SINE Alu -39 110 14 7 871 438 228 40 0 chr3 37498010 37498111 -122101672 - L2a LINE L2 -18 3408 3304 7 871 240 180 0 20 chr3 37498107 37498158 -122101625 + MIRc SINE MIR 70 119 -149 7 871 555 56 0 0 chr3 37498269 37498340 -122101443 + (AGGGGG)n Simple_repeat Simple_repeat 3 73 0 7 871 455 71 252 0 chr3 37499164 37499263 -122100520 - Lx9 LINE L1 -4 7640 7517 7 871 396 0 0 0 chr3 37499263 37499307 -122100476 + (CA)n Simple_repeat Simple_repeat 2 45 0 7 871 984 186 140 42 chr3 37499307 37499424 -122100359 - Lx9 LINE L1 -168 7476 7345 7 871 1111 126 32 21 chr3 37499424 37499611 -122100172 - B2_Mm2 SINE B2 -6 189 1 7 871 984 186 140 42 chr3 37499611 37499757 -122100026 - Lx9 LINE L1 -300 7344 7187 7 871 443 229 46 0 chr3 37499891 37500000 -122099783 + MER2 DNA MER2_type 207 320 -25 7 871 810 296 114 32 chr3 37501022 37501434 -122098349 - FordPrefect DNA Tip100 -49 1634 1189 1 871 560 279 133 32 chr3 37503106 37503354 -122096429 + B4A SINE B4 1 273 -19 2 871 257 149 0 0 chr3 37503389 37503436 -122096347 - MER4B-int LTR ERV1 -5567 1191 1145 3 871 186 176 0 0 chr3 37503436 37503487 -122096296 + (CA)n Simple_repeat Simple_repeat 2 52 0 4 871 587 184 0 11 chr3 37503508 37503689 -122096094 + (CA)n Simple_repeat Simple_repeat 2 180 0 4 871 906 317 48 14 chr3 37505347 37505789 -122093994 + MLT2B1 LTR ERVL 12 564 -3 5 871 1847 188 33 22 chr3 37505867 37506226 -122093557 + ORR1D1 LTR MaLR 10 372 -2 6 871 340 250 107 0 chr3 37506305 37506405 -122093378 + B3A SINE B2 10 140 -58 7 871 24 32 0 0 chr3 37507152 37507183 -122092600 + AT_rich Low_complexity Low_complexity 1 31 0 8 871 314 317 53 38 chr3 37507216 37507347 -122092436 + L1MC LINE L1 5301 5433 -2449 9 871 231 204 0 0 chr3 37507406 37507455 -122092328 + CT-rich Low_complexity Low_complexity 1 49 0 1 871 980 222 14 19 chr3 37507966 37508182 -122091601 - B3 SINE B2 0 216 2 1 871 511 234 49 49 chr3 37508775 37508919 -122090864 + ID_B1 SINE B4 81 224 0 1 871 1738 142 41 226 chr3 37508991 37509474 -122090309 + ORR1B1 LTR MaLR 1 394 0 1 871 244 250 18 18 chr3 37509477 37509534 -122090249 + ID SINE ID 2 58 -166 1 871 288 111 0 0 chr3 37509539 37509584 -122090199 + (A)n Simple_repeat Simple_repeat 1 45 0 1 871 213 223 226 69 chr3 37509617 37509665 -122090118 - B2_Mm2 SINE B2 -10 185 2 1 871 418 225 93 20 chr3 37509665 37509776 -122090007 - RSINE1 SINE B4 -45 120 2 1 871 580 308 154 23 chr3 37510253 37510732 -122089051 - L1MC LINE L1 -2193 3953 3412 1 871 183 98 38 38 chr3 37510761 37510802 -122088981 + T-rich Low_complexity Low_complexity 12 54 0 1 871 1234 54 0 0 chr3 37510802 37510950 -122088833 - B1_Mus1 SINE Alu 0 148 1 2 871 183 98 38 38 chr3 37510950 37510961 -122088822 + T-rich Low_complexity Low_complexity 2 11 0 2 871 582 272 47 42 chr3 37511152 37511367 -122088416 + B3 SINE B2 1 216 0 2 871 694 286 94 13 chr3 37511405 37511639 -122088144 - MLT1D LTR MaLR -1 504 252 2 871 296 218 64 0 chr3 37511863 37511941 -122087842 - ID4_ SINE ID 0 83 1 2 871 250 322 16 47 chr3 37511951 37512078 -122087705 - PB1 SINE Alu -3 124 2 2 871 1021 217 44 70 chr3 37512543 37512908 -122086875 + MTEb LTR MaLR 1 317 -62 2 871 185 292 28 97 chr3 37513159 37513303 -122086480 - L3 LINE CR1 -3365 1124 991 2 871 623 234 139 0 chr3 37514361 37514498 -122085285 + B4A SINE B4 118 273 -19 2 871 431 245 0 67 chr3 37514683 37514788 -122084995 - PB1D7 SINE Alu 0 120 23 2 871 22 0 0 0 chr3 37516374 37516396 -122083387 + AT_rich Low_complexity Low_complexity 1 22 0 3 871 334 268 34 192 chr3 37516669 37516747 -122083036 + MTEa LTR MaLR 1 81 -298 3 871 379 220 126 29 chr3 37516747 37516850 -122082933 - PB1D9 SINE Alu -3 117 5 3 871 334 268 34 192 chr3 37516850 37516979 -122082804 + MTEa LTR MaLR 82 175 -204 3 871 829 31 0 0 chr3 37517594 37517692 -122082091 + B2_Mm1t SINE B2 2 99 -94 3 871 642 49 0 0 chr3 37517715 37517797 -122081986 + (TAAA)n Simple_repeat Simple_repeat 3 84 0 3 871 517 226 9 9 chr3 37517814 37517930 -122081853 + PB1D9 SINE Alu 3 118 -2 3 871 279 133 0 0 chr3 37518031 37518076 -122081707 + (TCC)n Simple_repeat Simple_repeat 1 45 0 3 871 533 304 133 8 chr3 37518508 37518763 -122081020 - ORR1E LTR MaLR -51 308 22 3 871 656 241 35 7 chr3 37518961 37519103 -122080680 - B1_Mur1 SINE Alu -2 147 2 3 871 234 0 0 0 chr3 37519171 37519197 -122080586 + (TG)n Simple_repeat Simple_repeat 1 26 0 3 871 1132 100 0 22 chr3 37519977 37520161 -122079622 + (TTTTC)n Simple_repeat Simple_repeat 1 180 0 4 871 9927 109 41 34 chr3 37520239 37521357 -122078426 - L1VL2 LINE L1 -2594 3292 2026 4 871 1161 82 0 0 chr3 37521357 37521504 -122078279 - B1_Mus2 SINE Alu 0 147 1 4 871 9927 80 30 22 chr3 37521504 37523131 -122076652 - L1VL2 LINE L1 -1882 2032 366 4 871 1436 58 26 10 chr3 37523132 37523324 -122076459 - B2_Mm2 SINE B2 0 195 1 4 871 285 298 0 0 chr3 37523356 37523460 -122076323 + (CA)n Simple_repeat Simple_repeat 1 104 0 4 871 370 255 24 103 chr3 37524018 37524189 -122075594 - MTEb LTR MaLR -4 375 205 4 871 3132 227 69 10 chr3 37524237 37524958 -122074825 - Lx5 LINE L1 -2 7458 6695 4 871 4089 178 70 20 chr3 37524960 37526244 -122073539 - Lx5 LINE L1 -598 6452 5094 4 871 286 318 111 9 chr3 37526244 37526352 -122073431 - MTEb LTR MaLR -237 122 4 4 871 243 0 0 0 chr3 37527334 37527361 -122072422 + (CAAAA)n Simple_repeat Simple_repeat 3 29 0 4 871 426 321 75 35 chr3 37527731 37527957 -122071826 + Kanga1a DNA Tc2 178 412 -342 4 871 473 310 123 40 chr3 37527957 37528118 -122071665 + ORR1E LTR MaLR 1 182 -177 4 871 2053 101 0 114 chr3 37528118 37528486 -122071297 - ORR1A4 LTR MaLR 0 329 4 5 871 473 310 123 40 chr3 37528486 37528650 -122071133 + ORR1E LTR MaLR 183 353 -6 4 871 425 315 70 0 chr3 37528680 37528823 -122070960 + Kanga1a DNA Tc2 464 616 -138 4 871 438 333 78 7 chr3 37528823 37528965 -122070818 + B3A SINE B2 1 152 -46 5 871 558 65 33 0 chr3 37528966 37529058 -122070725 + (CA)n Simple_repeat Simple_repeat 2 96 0 5 871 703 241 29 12 chr3 37530149 37530321 -122069462 - ID_B1 SINE B4 -19 205 31 5 871 213 147 64 50 chr3 37530323 37530383 -122069400 + L2a LINE L2 3301 3391 -35 5 871 297 289 177 15 chr3 37530462 37530592 -122069191 + RSINE1 SINE B4 2 152 -13 5 871 363 17 0 63 chr3 37531561 37531624 -122068159 + (TTTG)n Simple_repeat Simple_repeat 2 60 0 5 871 669 235 25 0 chr3 37531711 37531830 -122067953 - B3 SINE B2 -82 134 13 5 871 249 218 0 141 chr3 37531885 37531949 -122067834 + B3 SINE B2 134 188 -28 5 871 189 94 0 0 chr3 37531972 37532004 -122067779 + (TTAA)n Simple_repeat Simple_repeat 3 34 0 5 871 820 218 24 0 chr3 37532022 37532192 -122067591 - B4 SINE B4 -38 254 81 6 871 207 0 0 0 chr3 37532195 37532218 -122067565 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 6 871 309 68 0 0 chr3 37532563 37532607 -122067176 + (TC)n Simple_repeat Simple_repeat 1 44 0 6 871 261 0 0 0 chr3 37532607 37532636 -122067147 + (TG)n Simple_repeat Simple_repeat 2 30 0 6 871 340 250 51 182 chr3 37532637 37532774 -122067009 - RSINE1 SINE B4 -44 121 3 6 871 1134 221 220 6 chr3 37533047 37533388 -122066395 - MTD LTR MaLR -1 418 5 6 871 420 156 0 0 chr3 37533983 37534092 -122065691 + (TA)n Simple_repeat Simple_repeat 1 109 0 6 871 28 29 0 0 chr3 37534108 37534143 -122065640 + AT_rich Low_complexity Low_complexity 1 35 0 6 871 1196 75 0 0 chr3 37534181 37534328 -122065455 - B1_Mus2 SINE Alu 0 147 1 6 871 550 237 82 48 chr3 37534402 37534610 -122065173 - B3 SINE B2 -1 215 1 6 871 856 150 29 0 chr3 37534881 37535021 -122064762 + B1_Mur4 SINE Alu 6 149 -1 7 871 204 40 0 0 chr3 37537274 37537299 -122062484 + (TTA)n Simple_repeat Simple_repeat 1 25 0 7 871 41 87 0 30 chr3 37539606 37539772 -122060011 + GC_rich Low_complexity Low_complexity 1 161 0 7 871 332 231 120 11 chr3 37546147 37546239 -122053544 - RSINE1 SINE B4 -20 145 44 7 871 471 35 0 0 chr3 37546852 37546909 -122052874 + (GA)n Simple_repeat Simple_repeat 2 58 0 7 871 643 266 63 0 chr3 37547760 37547918 -122051865 - ID_B1 SINE B4 -56 168 1 7 871 22 35 0 0 chr3 37548069 37548098 -122051685 + AT_rich Low_complexity Low_complexity 1 29 0 7 871 198 167 0 0 chr3 37548575 37548611 -122051172 + (TA)n Simple_repeat Simple_repeat 2 37 0 7 871 183 42 0 0 chr3 37548624 37548648 -122051135 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 7 871 623 287 63 5 chr3 37548649 37548838 -122050945 - B3 SINE B2 -14 202 3 7 871 1147 216 152 9 chr3 37548879 37549202 -122050581 + ORR1D2 LTR MaLR 2 370 0 8 871 702 286 43 0 chr3 37549229 37549439 -122050344 - ID_B1 SINE B4 -5 219 1 8 871 450 0 0 0 chr3 37549884 37549934 -122049849 + (TTTA)n Simple_repeat Simple_repeat 4 53 0 8 871 245 324 19 10 chr3 37550068 37550171 -122049612 + B4 SINE B4 2 105 -187 8 871 414 0 0 0 chr3 37550279 37550325 -122049458 + (CA)n Simple_repeat Simple_repeat 1 46 0 8 871 1265 194 29 4 chr3 37550730 37550973 -122048810 - MTD LTR MaLR 0 419 171 8 871 881 128 53 0 chr3 37550974 37551107 -122048676 + B1_Mur4 SINE Alu 11 150 0 8 871 675 283 104 5 chr3 37552103 37552323 -122047460 + B4A SINE B4 31 272 -20 8 871 219 186 0 0 chr3 37552440 37552483 -122047300 + (TG)n Simple_repeat Simple_repeat 1 43 0 8 871 306 0 0 0 chr3 37553735 37553769 -122046014 + (TG)n Simple_repeat Simple_repeat 1 34 0 8 871 453 81 0 0 chr3 37553841 37553903 -122045880 + (TCTCCC)n Simple_repeat Simple_repeat 6 67 0 9 871 382 275 26 66 chr3 37553934 37554086 -122045697 - B4A SINE B4 -146 146 1 9 871 209 322 0 17 chr3 37554131 37554191 -122045592 + L2a LINE L2 3358 3416 -10 9 871 1103 82 0 13 chr3 37554220 37554233 -122045550 - B1_Mus1 SINE Alu 0 148 137 9 871 1491 23 0 0 chr3 37554233 37554408 -122045375 + (TTTC)n Simple_repeat Simple_repeat 2 176 0 9 871 1103 82 0 13 chr3 37554408 37554543 -122045240 - B1_Mus1 SINE Alu -12 136 2 9 871 853 281 58 33 chr3 37555398 37555674 -122044109 + B4 SINE B4 6 288 -4 9 871 387 0 0 0 chr3 37557001 37557044 -122042739 + (TG)n Simple_repeat Simple_repeat 1 43 0 9 871 765 0 0 0 chr3 37557044 37557128 -122042655 + (GA)n Simple_repeat Simple_repeat 1 85 0 9 871 423 0 0 0 chr3 37557909 37557956 -122041827 + (TG)n Simple_repeat Simple_repeat 1 47 0 9 871 411 193 0 0 chr3 37557960 37558043 -122041740 + (TA)n Simple_repeat Simple_repeat 2 84 0 9 871 465 180 249 47 chr3 37558134 37558303 -122041480 - ID_B1 SINE B4 -18 206 4 1 871 501 17 0 0 chr3 37558909 37558967 -122040816 + (TG)n Simple_repeat Simple_repeat 1 58 0 1 871 317 314 13 81 chr3 37559595 37559744 -122040039 - RSINE1 SINE B4 -2 163 25 1 871 375 371 69 6 chr3 37559719 37559879 -122039904 - B4A SINE B4 -120 172 3 1 871 260 304 0 12 chr3 37560079 37560159 -122039624 + (TG)n Simple_repeat Simple_repeat 1 79 0 1 871 215 306 0 0 chr3 37560295 37560357 -122039426 - RSINE1 SINE B4 -74 91 30 1 871 644 243 155 26 chr3 37560372 37560566 -122039217 - B4 SINE B4 -67 225 7 1 871 255 275 116 0 chr3 37560638 37560707 -122039076 - ID4_ SINE ID 0 83 7 1 871 405 102 0 0 chr3 37562081 37562140 -122037643 + (TAA)n Simple_repeat Simple_repeat 3 61 0 1 871 21 57 0 0 chr3 37562531 37562566 -122037217 + AT_rich Low_complexity Low_complexity 1 35 0 1 871 283 338 14 0 chr3 37562735 37562809 -122036974 - PB1D10 SINE Alu -8 109 35 1 871 457 296 55 65 chr3 37562852 37563069 -122036714 + B3A SINE B2 2 216 0 1 871 297 0 0 0 chr3 37563089 37563122 -122036661 + (TG)n Simple_repeat Simple_repeat 2 34 0 1 871 641 246 30 0 chr3 37563129 37563263 -122036520 - B3A SINE B2 -50 148 11 1 871 461 313 104 9 chr3 37563304 37563729 -122036054 - L1MB2 LINE L1 -177 5994 5525 1 871 375 288 76 85 chr3 37564454 37564678 -122035105 + RLTR14 LTR ERV1 158 379 -3 1 871 389 262 55 80 chr3 37564745 37564944 -122034839 + RMER17C LTR ERVK 167 360 -50 1 871 405 0 0 0 chr3 37565613 37565658 -122034125 + (TC)n Simple_repeat Simple_repeat 1 45 0 1 871 282 56 0 0 chr3 37565831 37565867 -122033916 + (TCCC)n Simple_repeat Simple_repeat 4 39 0 1 871 490 198 25 67 chr3 37568491 37568610 -122031173 + B1_Mur1 SINE Alu 35 148 -1 1 871 373 279 0 46 chr3 37568627 37568736 -122031047 + B3 SINE B2 1 104 -112 1 871 757 178 29 15 chr3 37568858 37568989 -122030794 + B1_Mur1 SINE Alu 3 136 -13 1 871 189 0 0 0 chr3 37568989 37569010 -122030773 + (CATA)n Simple_repeat Simple_repeat 1 21 0 1 871 303 248 109 50 chr3 37569315 37569330 -122030453 + B1_Mur1 SINE Alu 24 148 0 1 871 418 243 68 0 chr3 37569330 37569433 -122030350 + ID_B1 SINE B4 115 224 0 1 871 317 75 19 0 chr3 37569436 37569489 -122030294 + (CAAAA)n Simple_repeat Simple_repeat 4 57 0 1 871 507 184 30 3 chr3 37570319 37570424 -122029359 + MTD LTR MaLR 274 419 0 1 871 513 256 79 8 chr3 37570683 37570809 -122028974 - B1F1 SINE Alu -13 136 2 1 871 270 289 58 117 chr3 37570809 37570850 -122028933 - MT2B LTR ERVL -441 160 128 1 871 402 295 51 6 chr3 37572589 37572746 -122027037 - RSINE1 SINE B4 0 165 2 1 871 306 0 0 0 chr3 37573767 37573801 -122025982 + (CAGG)n Simple_repeat Simple_repeat 2 35 0 1 871 231 36 0 0 chr3 37575166 37575194 -122024589 + (TG)n Simple_repeat Simple_repeat 1 28 0 1 871 405 39 0 0 chr3 37576559 37576610 -122023173 + (GAAA)n Simple_repeat Simple_repeat 2 52 0 1 871 733 21 10 10 chr3 37576610 37576705 -122023078 + (GAGAA)n Simple_repeat Simple_repeat 2 97 0 1 871 559 259 109 45 chr3 37577249 37577451 -122022332 + B3 SINE B2 2 216 0 1 871 440 67 0 0 chr3 37577936 37578084 -122021699 - L1Md_F2 LINE L1 0 6582 6504 1 871 32 0 0 0 chr3 37578101 37578133 -122021650 + AT_rich Low_complexity Low_complexity 1 32 0 1 871 263 242 65 75 chr3 37578530 37578637 -122021146 - B4A SINE B4 0 292 187 1 871 241 154 96 0 chr3 37578686 37578738 -122021045 - B4A SINE B4 -187 105 49 1 871 325 334 238 8 chr3 37578752 37578877 -122020906 - L1MEc LINE L1 -3591 2728 2573 1 871 693 137 139 44 chr3 37578877 37579014 -122020769 - B1_Mur4 SINE Alu 0 150 1 1 871 378 331 136 20 chr3 37579014 37579302 -122020481 - L1MEc LINE L1 -3747 2572 2235 1 871 962 295 55 7 chr3 37579650 37579923 -122019860 - B4 SINE B4 0 292 7 1 871 333 281 1 3 chr3 37580357 37580486 -122019297 - L1_Rod LINE L1 -374 5926 5731 1 871 971 108 261 0 chr3 37581066 37581242 -122018541 - URR1A DNA MER1_type 0 226 5 1 871 666 321 40 86 chr3 37581464 37581835 -122017948 + ORR1E LTR MaLR 2 355 -4 1 871 973 241 98 40 chr3 37582613 37582889 -122016894 + B4A SINE B4 1 292 0 1 871 426 254 0 0 chr3 37582889 37583113 -122016670 + (CA)n Simple_repeat Simple_repeat 1 224 0 1 871 325 262 0 0 chr3 37583745 37583806 -122015977 + RSINE1 SINE B4 3 63 -102 1 871 663 127 25 50 chr3 37584172 37584412 -122015371 + GA-rich Low_complexity Low_complexity 1 234 0 1 871 372 43 0 0 chr3 37584506 37584552 -122015231 + (TCTG)n Simple_repeat Simple_repeat 2 47 0 1 871 225 0 0 0 chr3 37584680 37584705 -122015078 + (A)n Simple_repeat Simple_repeat 1 25 0 1 871 435 255 105 40 chr3 37585125 37585325 -122014458 + RLTR42-int LTR ERVK 1164 1376 -4146 1 871 191 62 62 0 chr3 37585525 37585557 -122014226 + (TCCC)n Simple_repeat Simple_repeat 3 36 0 1 871 374 272 41 23 chr3 37585776 37585912 -122013871 - B1F1 SINE Alu 0 149 13 1 871 308 250 93 10 chr3 37586814 37586911 -122012872 - ID_B1 SINE B4 -44 180 76 1 871 23 0 0 0 chr3 37586915 37586938 -122012845 + AT_rich Low_complexity Low_complexity 1 23 0 1 871 1276 219 139 19 chr3 37587514 37587884 -122011899 + MTD LTR MaLR 5 405 -14 1 871 201 74 0 0 chr3 37588672 37588699 -122011084 + (CAGA)n Simple_repeat Simple_repeat 3 29 0 1 871 271 275 16 16 chr3 37589181 37589259 -122010524 + tRNA-Ala-GCA tRNA tRNA 1 74 -1 1 871 349 156 26 0 chr3 37589268 37589345 -122010438 + (TCCA)n Simple_repeat Simple_repeat 3 81 0 1 871 459 0 0 0 chr3 37589475 37589526 -122010257 + (TG)n Simple_repeat Simple_repeat 1 51 0 1 871 408 232 233 14 chr3 37589704 37589914 -122009869 + Tigger2b DNA MER2_type 70 325 -401 1 871 286 261 95 78 chr3 37590020 37590199 -122009584 + Tigger2b DNA MER2_type 495 676 -50 1 871 766 274 20 25 chr3 37590869 37591071 -122008712 + B4A SINE B4 15 215 -77 1 871 918 78 0 0 chr3 37591071 37591187 -122008596 + Lx2 LINE L1 6528 6643 -354 1 871 1451 86 9 31 chr3 37591187 37591415 -122008368 + Lx2 LINE L1 6775 6997 0 1 871 237 274 0 0 chr3 37592025 37592076 -122007707 + C-rich Low_complexity Low_complexity 1 51 0 1 871 350 329 59 44 chr3 37592871 37593165 -122006618 - L1MD LINE L1 -2380 3766 3468 1 871 771 297 39 5 chr3 37593679 37593992 -122005791 - L1MA4A LINE L1 -371 5932 5589 1 871 412 305 0 19 chr3 37594027 37594134 -122005649 - PB1D7 SINE Alu -9 111 7 1 871 265 333 8 66 chr3 37594040 37594162 -122005621 - ID_B1 SINE B4 -48 176 62 1 871 1546 179 133 27 chr3 37594197 37594535 -122005248 + ORR1D1 LTR MaLR 1 374 0 1 871 789 281 24 19 chr3 37594590 37594797 -122004986 - B3 SINE B2 -8 208 1 1 871 1787 268 92 34 chr3 37594815 37595973 -122003810 - L1MA4A LINE L1 -480 5400 4178 1 871 225 106 43 0 chr3 37596000 37596047 -122003736 - B3 SINE B2 -1 215 167 1 871 937 203 348 14 chr3 37596803 37597091 -122002692 - ORR1D1 LTR MaLR 0 384 1 1 871 504 0 0 0 chr3 37597238 37597294 -122002489 + (GA)n Simple_repeat Simple_repeat 2 57 0 1 871 1022 58 65 0 chr3 37597357 37597495 -122002288 + B2_Mm2 SINE B2 2 148 -47 1 871 198 0 0 0 chr3 37597505 37597527 -122002256 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 1 871 925 64 6 171 chr3 37597537 37597707 -122002076 + B1_Mm SINE Alu 1 142 -5 1 871 261 311 89 0 chr3 37597853 37597943 -122001840 - PB1 SINE Alu -3 124 27 1 871 487 326 15 0 chr3 37598441 37598573 -122001210 - RSINE1 SINE B4 -29 136 3 1 871 232 268 99 0 chr3 37599937 37600008 -121999775 - MER34 LTR ERV1 -80 462 385 1 871 595 239 41 21 chr3 37600010 37600155 -121999628 + B1F1 SINE Alu 1 148 -1 1 871 1840 161 84 38 chr3 37600438 37600805 -121998978 - ORR1C2 LTR MaLR 0 384 1 1 871 270 0 0 0 chr3 37601542 37601572 -121998211 + (TG)n Simple_repeat Simple_repeat 2 31 0 1 871 795 241 21 16 chr3 37601597 37601783 -121998000 - B4 SINE B4 -57 235 49 1 871 181 289 64 26 chr3 37601787 37601865 -121997918 + L2a LINE L2 3341 3421 -5 1 871 1485 201 54 59 chr3 37602013 37602384 -121997399 + ORR1D2 LTR MaLR 2 370 0 1 871 2257 121 14 69 chr3 37602462 37602881 -121996902 - RMER10B LTR ERVL -1 397 2 1 871 279 0 0 0 chr3 37603308 37603339 -121996444 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1 871 1255 41 0 0 chr3 37603355 37603501 -121996282 - B1_Mm SINE Alu -1 146 1 1 871 1483 252 63 138 chr3 37603568 37604125 -121995658 - Lx6 LINE L1 -15 7445 6931 1 871 459 0 0 0 chr3 37604948 37604999 -121994784 + (CA)n Simple_repeat Simple_repeat 2 52 0 1 871 207 69 0 0 chr3 37605065 37605094 -121994689 + (TG)n Simple_repeat Simple_repeat 2 30 0 1 871 801 190 209 17 chr3 37605122 37605357 -121994426 - B4 SINE B4 -12 280 1 1 871 1457 73 10 5 chr3 37605710 37605902 -121993881 + B2_Mm1t SINE B2 1 193 0 1 871 500 0 17 0 chr3 37606093 37606153 -121993630 + (CA)n Simple_repeat Simple_repeat 1 61 0 1 871 1085 135 91 5 chr3 37606517 37606703 -121993080 - URR1A DNA MER1_type -23 203 2 1 871 947 276 69 77 chr3 37606944 37607392 -121992391 + RLTR26 LTR ERVK 5 476 -166 1 871 371 301 0 16 chr3 37607810 37607935 -121991848 - L1M4 LINE L1 -978 5168 5046 1 871 370 317 10 19 chr3 37607983 37608086 -121991697 + B3A SINE B2 94 195 -3 1 871 523 242 52 15 chr3 37608248 37608382 -121991401 - B1_Mur1 SINE Alu -9 140 2 1 871 1850 146 15 53 chr3 37609303 37609644 -121990139 - ORR1A4 LTR MaLR -1 328 1 1 871 1153 58 0 0 chr3 37609951 37610088 -121989695 + B1_Mus2 SINE Alu 1 137 -10 2 871 1308 49 0 0 chr3 37610088 37610252 -121989531 + (GAA)n Simple_repeat Simple_repeat 2 165 0 2 871 577 296 92 28 chr3 37610382 37610650 -121989133 - MTE2b LTR MaLR -6 373 1 2 871 866 291 61 18 chr3 37612263 37612540 -121987243 + B4 SINE B4 1 289 -3 2 871 213 154 0 0 chr3 37612905 37612944 -121986839 + (CA)n Simple_repeat Simple_repeat 2 40 0 2 871 288 256 38 107 chr3 37613209 37613340 -121986443 + MT2B LTR ERVL 139 260 -341 2 871 540 236 18 9 chr3 37613235 37613346 -121986437 + B1_Mur3 SINE Alu 2 113 -36 2 871 243 0 0 0 chr3 37613355 37613382 -121986401 + (CAAA)n Simple_repeat Simple_repeat 1 27 0 2 871 657 69 0 0 chr3 37614188 37614275 -121985508 + (TG)n Simple_repeat Simple_repeat 2 88 0 2 871 242 233 80 23 chr3 37615192 37615280 -121984503 + PB1D10 SINE Alu 24 116 -1 2 871 594 0 0 0 chr3 37615935 37616001 -121983782 + (GA)n Simple_repeat Simple_repeat 1 66 0 2 871 285 29 0 0 chr3 37616714 37616748 -121983035 + (TG)n Simple_repeat Simple_repeat 1 34 0 2 871 352 205 182 33 chr3 37616764 37616885 -121982898 - ID_B1 SINE B4 0 224 86 2 871 1395 77 16 6 chr3 37616989 37617172 -121982611 - B2_Mm2 SINE B2 -9 186 2 2 871 364 275 464 0 chr3 37617257 37617395 -121982388 - ID_B1 SINE B4 -21 203 2 2 872 203 341 11 22 chr3 37618098 37618188 -121981595 - L2 LINE L2 -2990 429 341 2 872 481 254 9 17 chr3 37618989 37619105 -121980678 - PB1D10 SINE Alu -2 115 1 2 872 453 225 83 23 chr3 37619234 37619366 -121980417 + B1F1 SINE Alu 1 140 -9 2 872 582 28 0 0 chr3 37619382 37619454 -121980329 + (CA)n Simple_repeat Simple_repeat 2 73 0 2 872 239 337 137 11 chr3 37619600 37619783 -121980000 - L2c LINE L2 -64 3323 3118 2 872 873 205 49 15 chr3 37620153 37620356 -121979427 - B3 SINE B2 -6 210 1 2 872 429 286 12 47 chr3 37620967 37621136 -121978647 - RSINE1 SINE B4 0 165 3 2 872 492 99 0 0 chr3 37621149 37621220 -121978563 + (CACG)n Simple_repeat Simple_repeat 1 71 0 2 872 416 226 57 0 chr3 37621229 37621335 -121978448 + PB1D9 SINE Alu 8 119 -1 2 872 183 80 0 0 chr3 37621361 37621386 -121978397 + (TA)n Simple_repeat Simple_repeat 2 26 0 2 872 194 227 228 40 chr3 37623745 37623846 -121975937 - MIRb SINE MIR -3 265 146 2 872 351 314 92 82 chr3 37625277 37625593 -121974190 - MLT1J LTR MaLR -46 466 148 2 872 579 247 120 91 chr3 37626652 37626756 -121973027 + B4 SINE B4 2 216 -76 2 872 836 57 0 0 chr3 37626756 37626861 -121972922 + B1_Mus1 SINE Alu 34 138 -10 2 872 605 283 50 10 chr3 37626885 37627085 -121972698 + B4 SINE B4 81 288 -4 2 872 496 14 56 0 chr3 37628042 37628113 -121971670 + (CAAAA)n Simple_repeat Simple_repeat 3 77 0 2 872 495 0 0 0 chr3 37628756 37628811 -121970972 + (TATG)n Simple_repeat Simple_repeat 4 58 0 2 872 1027 62 0 0 chr3 37628811 37628940 -121970843 - B1_Mus1 SINE Alu -7 141 13 2 872 28 0 0 0 chr3 37629352 37629380 -121970403 + AT_rich Low_complexity Low_complexity 1 28 0 2 872 663 178 80 22 chr3 37629560 37629698 -121970085 + B1_Mus1 SINE Alu 1 146 -2 2 872 896 237 74 50 chr3 37629942 37630200 -121969583 + B4A SINE B4 2 265 -27 2 872 804 223 96 0 chr3 37631229 37631426 -121968357 - B3 SINE B2 0 216 1 2 872 286 280 13 13 chr3 37632075 37632151 -121967632 - RSINE1 SINE B4 -87 78 3 2 872 22 0 0 0 chr3 37632274 37632296 -121967487 + AT_rich Low_complexity Low_complexity 1 22 0 2 872 2255 169 58 17 chr3 37632716 37633131 -121966652 - RMER5 LTR ERV1 -102 432 1 2 872 538 274 25 70 chr3 37633298 37633455 -121966328 - RSINE1 SINE B4 -8 157 8 2 872 318 213 0 76 chr3 37633492 37633558 -121966225 - BC1_Mm scRNA scRNA -69 83 23 2 872 1954 173 31 41 chr3 37634078 37634470 -121965313 + RMER6B LTR ERVK 54 441 -20 2 872 877 239 70 42 chr3 37634476 37634690 -121965093 - Lx8 LINE L1 -976 6497 6278 2 872 285 307 0 0 chr3 37634697 37634772 -121965011 - B4 SINE B4 -214 78 4 2 872 222 318 29 72 chr3 37634825 37634964 -121964819 + MIR SINE MIR 120 252 -10 2 872 21 36 0 0 chr3 37635001 37635029 -121964754 + AT_rich Low_complexity Low_complexity 1 28 0 2 872 369 0 0 0 chr3 37635036 37635077 -121964706 + (CATA)n Simple_repeat Simple_repeat 3 43 0 2 872 335 299 38 30 chr3 37635808 37635939 -121963844 + B3 SINE B2 85 216 0 2 872 1484 296 47 39 chr3 37635950 37636534 -121963249 - Lx6 LINE L1 -26 7434 6479 2 872 310 222 0 53 chr3 37636531 37636607 -121963176 - Lx6 LINE L1 -687 6363 6292 2 872 280 241 0 0 chr3 37636607 37636665 -121963118 + RMER10B LTR ERVL 3 60 -338 2 872 459 245 11 0 chr3 37636666 37636760 -121963023 - Lx6 LINE L1 -756 6294 6200 2 872 283 266 38 0 chr3 37636817 37636896 -121962887 + ID4 SINE ID 2 83 0 2 872 423 0 0 0 chr3 37636941 37636988 -121962795 + (TG)n Simple_repeat Simple_repeat 2 48 0 2 872 317 321 29 36 chr3 37637602 37637741 -121962042 - MIR SINE MIR -2 260 123 2 872 290 346 39 19 chr3 37638194 37638297 -121961486 + MARNA DNA Mariner 337 441 -145 2 872 460 280 152 0 chr3 37638557 37638682 -121961101 + RSINE1 SINE B4 3 146 -19 2 872 319 374 0 0 chr3 37639326 37639441 -121960342 + (TG)n Simple_repeat Simple_repeat 2 116 0 2 872 648 234 50 39 chr3 37639939 37640105 -121959678 + B3A SINE B2 1 169 -47 2 872 645 14 0 0 chr3 37640105 37640179 -121959604 + (CA)n Simple_repeat Simple_repeat 1 74 0 2 872 614 250 56 66 chr3 37640179 37640209 -121959574 + B3 SINE B2 170 195 -21 2 872 321 340 93 26 chr3 37641136 37641287 -121958496 - MIRb SINE MIR -45 223 63 2 872 278 314 92 49 chr3 37641297 37641461 -121958322 - LTR16C LTR ERVL -22 467 297 2 872 1041 279 14 30 chr3 37641687 37641983 -121957800 + B4A SINE B4 2 292 0 2 872 753 251 88 28 chr3 37643035 37643252 -121956531 + ORR1E LTR MaLR 1 230 -129 2 872 247 208 86 49 chr3 37643385 37643466 -121956317 - RMER1C Other Other -55 1287 1204 2 872 1519 48 16 0 chr3 37643532 37643719 -121956064 - B2_Mm1a SINE B2 -2 191 2 2 872 3546 193 111 76 chr3 37643738 37644746 -121955037 - Lx9 LINE L1 -10 7634 6592 2 872 214 250 0 0 chr3 37645450 37645494 -121954289 + (TG)n Simple_repeat Simple_repeat 1 44 0 2 872 842 251 60 49 chr3 37645505 37645790 -121953993 - B4 SINE B4 -4 288 1 2 872 264 268 50 20 chr3 37646427 37646526 -121953257 + L1ME1 LINE L1 6064 6165 -14 2 872 192 288 61 0 chr3 37648072 37648138 -121951645 + MIR SINE MIR 42 111 -97 2 872 324 286 31 81 chr3 37648479 37648639 -121951144 - RMER15 LTR ERVL -77 498 347 2 872 2114 174 109 46 chr3 37649260 37649431 -121950352 - L1_Mur3 LINE L1 -2559 3318 3150 2 872 189 0 0 0 chr3 37649431 37649452 -121950331 + (TG)n Simple_repeat Simple_repeat 2 22 0 2 872 2114 168 109 47 chr3 37649452 37649767 -121950016 - L1_Mur3 LINE L1 -2730 3150 2796 2 872 1141 76 0 7 chr3 37649767 37649912 -121949871 - B1_Mus2 SINE Alu -2 145 2 2 872 2114 249 94 29 chr3 37649912 37650122 -121949661 - L1_Mur3 LINE L1 -3085 2795 2661 2 872 351 0 0 0 chr3 37650295 37650334 -121949449 + (TC)n Simple_repeat Simple_repeat 2 40 0 2 872 509 201 34 29 chr3 37650347 37650457 -121949326 - B4 SINE B4 -23 269 137 2 872 469 358 12 24 chr3 37650812 37650978 -121948805 - RSINE1 SINE B4 0 165 2 2 872 241 333 19 10 chr3 37651118 37651221 -121948562 + CT-rich Low_complexity Low_complexity 2 105 0 2 872 627 14 0 0 chr3 37651475 37651547 -121948236 + (TC)n Simple_repeat Simple_repeat 1 72 0 2 872 247 379 78 15 chr3 37652256 37652462 -121947321 + L2 LINE L2 2609 2827 -592 2 872 692 280 92 10 chr3 37652630 37652825 -121946958 - ID_B1 SINE B4 -10 214 4 2 872 442 307 56 21 chr3 37653075 37653218 -121946565 - MIR SINE MIR -74 188 41 2 872 296 173 77 0 chr3 37653542 37653594 -121946189 + ID SINE ID 3 58 -166 2 872 1722 169 82 67 chr3 37653594 37653950 -121945833 - ORR1C1 LTR MaLR 0 378 18 2 872 604 251 131 6 chr3 37654491 37654667 -121945116 - B3A SINE B2 0 198 1 2 872 490 229 54 60 chr3 37655170 37655319 -121944464 + RLTR14 LTR ERV1 224 371 -11 2 872 1528 164 0 34 chr3 37655479 37655770 -121944013 + RMER10B LTR ERVL 1 281 -117 2 872 359 120 0 0 chr3 37655782 37655832 -121943951 + RMER10B LTR ERVL 338 387 -11 2 872 872 65 8 0 chr3 37656405 37656529 -121943254 + (GGA)n Simple_repeat Simple_repeat 2 126 0 2 872 741 197 128 0 chr3 37658125 37658313 -121941470 + B3 SINE B2 3 214 -2 2 872 247 297 11 32 chr3 37659130 37659224 -121940559 - RLTR9A LTR ERVK -187 181 90 2 872 1310 165 190 18 chr3 37659284 37659568 -121940215 - ORR1D1 LTR MaLR 0 374 42 2 872 180 0 0 0 chr3 37661115 37661135 -121938648 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 2 872 846 268 66 104 chr3 37661631 37661997 -121937786 + MTE2a LTR MaLR 27 378 -1 2 872 340 253 231 23 chr3 37662282 37662497 -121937286 + ORR1E LTR MaLR 88 347 -32 2 872 573 356 39 63 chr3 37662682 37662895 -121936888 + MTD LTR MaLR 1 213 -206 2 872 416 251 97 97 chr3 37662895 37663111 -121936672 + B3 SINE B2 1 216 0 2 872 573 356 39 63 chr3 37663111 37663230 -121936553 + MTD LTR MaLR 214 325 -94 2 872 1867 240 30 9 chr3 37663226 37663664 -121936119 + RCHARR1 DNA MER1_type 527 973 -1 2 872 332 304 36 22 chr3 37663924 37664062 -121935721 - MLT1I LTR MaLR -8 403 264 2 872 758 84 16 31 chr3 37664517 37664659 -121935124 + B1_Mus2 SINE Alu 5 149 0 2 872 828 267 65 102 chr3 37664927 37665311 -121934472 - MTE2a LTR MaLR -9 370 1 2 872 417 330 38 0 chr3 37665529 37665635 -121934148 - PB1D10 SINE Alu -6 111 2 3 872 275 273 0 49 chr3 37666496 37666577 -121933206 - ID4_ SINE ID -2 81 5 3 872 970 88 9 188 chr3 37669933 37670157 -121929626 - ORR1A4 LTR MaLR -141 188 5 3 872 1823 156 97 6 chr3 37670159 37670501 -121929282 - RLTR14 LTR ERV1 -9 373 1 3 872 824 10 20 0 chr3 37670766 37670866 -121928917 + (TTTC)n Simple_repeat Simple_repeat 1 102 0 3 872 768 283 0 24 chr3 37670896 37671106 -121928677 - B4 SINE B4 0 292 88 3 872 278 226 176 12 chr3 37671181 37671266 -121928517 - RSINE1 SINE B4 0 165 67 3 872 244 232 0 44 chr3 37671887 37671977 -121927806 + G-rich Low_complexity Low_complexity 6 91 0 3 872 231 222 19 0 chr3 37672494 37672548 -121927235 - MTEa LTR MaLR -75 304 250 3 872 605 221 82 25 chr3 37672765 37672923 -121926860 - B3A SINE B2 -7 191 25 3 872 326 107 0 35 chr3 37672909 37672967 -121926816 - U5 snRNA snRNA -60 56 1 3 872 21 71 0 0 chr3 37673508 37673550 -121926233 + AT_rich Low_complexity Low_complexity 1 42 0 3 872 537 16 0 0 chr3 37674309 37674371 -121925412 + (TC)n Simple_repeat Simple_repeat 2 63 0 3 872 194 0 39 0 chr3 37674371 37674396 -121925387 + (TG)n Simple_repeat Simple_repeat 2 28 0 3 872 558 256 198 30 chr3 37674423 37674660 -121925123 - B4 SINE B4 -14 278 2 3 872 581 0 0 14 chr3 37675033 37675103 -121924680 + (GAAA)n Simple_repeat Simple_repeat 2 70 0 3 872 1016 128 89 46 chr3 37677627 37677864 -121921919 - RLTR11A2 LTR ERVK -280 247 1 3 872 216 0 0 0 chr3 37678572 37678596 -121921187 + (TG)n Simple_repeat Simple_repeat 2 25 0 3 872 643 253 6 19 chr3 37678603 37678764 -121921019 - B3A SINE B2 -39 159 1 3 872 286 232 29 0 chr3 37679656 37679725 -121920058 + (TAG)n Simple_repeat Simple_repeat 1 71 0 3 872 252 0 0 0 chr3 37680663 37680691 -121919092 + (TG)n Simple_repeat Simple_repeat 1 28 0 3 872 567 0 0 0 chr3 37680691 37680753 -121919030 + (GA)n Simple_repeat Simple_repeat 1 63 0 3 872 567 53 0 0 chr3 37681188 37681263 -121918520 + (TCCC)n Simple_repeat Simple_repeat 3 77 0 3 872 485 217 35 62 chr3 37681263 37681376 -121918407 - ID_B1 SINE B4 -2 222 113 3 872 313 113 0 19 chr3 37681376 37681392 -121918391 - HAL1-3A_ME LINE L1 -830 2028 2013 3 872 486 0 0 0 chr3 37681392 37681446 -121918337 + (TAG)n Simple_repeat Simple_repeat 3 56 0 3 872 313 113 0 19 chr3 37681446 37681483 -121918300 - HAL1-3A_ME LINE L1 -846 2012 1976 3 872 850 286 38 11 chr3 37681521 37681786 -121917997 - B4A SINE B4 -18 274 3 3 872 4683 86 27 0 chr3 37682089 37682717 -121917066 + L1_Mus4 LINE L1 5885 6529 -107 3 872 2568 80 3 0 chr3 37682851 37683177 -121916606 - ORR1A2 LTR MaLR 0 327 1 3 872 327 272 0 0 chr3 37683644 37683758 -121916025 + (CA)n Simple_repeat Simple_repeat 1 114 0 3 872 333 0 0 0 chr3 37683989 37684026 -121915757 + (TG)n Simple_repeat Simple_repeat 2 38 0 3 872 182 105 0 26 chr3 37684462 37684501 -121915282 + (TTTTTG)n Simple_repeat Simple_repeat 6 43 0 3 872 671 135 102 8 chr3 37684638 37684765 -121915018 + B1_Mur1 SINE Alu 2 140 -9 3 872 706 260 88 5 chr3 37684781 37684986 -121914797 + ID_B1 SINE B4 2 223 -1 3 872 576 186 0 0 chr3 37685314 37685427 -121914356 + (CA)n Simple_repeat Simple_repeat 2 114 0 3 872 200 143 29 0 chr3 37685427 37685462 -121914321 + (TA)n Simple_repeat Simple_repeat 1 36 0 3 872 377 212 34 34 chr3 37685463 37685580 -121914203 - Lx8 LINE L1 0 7473 7357 3 872 333 0 0 0 chr3 37685581 37685618 -121914165 + (TTTA)n Simple_repeat Simple_repeat 3 39 0 3 872 599 218 178 36 chr3 37685791 37686034 -121913749 + ORR1E LTR MaLR 5 291 -68 3 872 1463 28 0 6 chr3 37686034 37686211 -121913572 - L1Md_F3 LINE L1 -14 6570 6395 3 872 599 162 14 29 chr3 37686211 37686281 -121913502 + ORR1E LTR MaLR 292 379 0 3 872 373 248 28 24 chr3 37687006 37687262 -121912521 + GA-rich Low_complexity Low_complexity 1 257 0 3 872 731 272 25 60 chr3 37687775 37688057 -121911726 + B4 SINE B4 2 273 -19 3 872 441 0 0 0 chr3 37688063 37688112 -121911671 + (CA)n Simple_repeat Simple_repeat 1 49 0 3 872 558 110 0 0 chr3 37689286 37689368 -121910415 + B1_Mur1 SINE Alu 58 139 -10 3 872 585 0 0 0 chr3 37689391 37689456 -121910327 + (CAAAC)n Simple_repeat Simple_repeat 4 68 0 3 872 257 291 102 8 chr3 37690428 37690556 -121909227 - Charlie8 DNA MER1_type -2210 218 79 3 872 908 225 33 14 chr3 37691637 37691849 -121907934 - B3 SINE B2 0 216 1 3 872 346 285 109 29 chr3 37691923 37692198 -121907585 - L1MC5 LINE L1 -371 7590 7294 3 872 563 223 27 0 chr3 37692441 37692553 -121907230 - B3 SINE B2 -101 115 1 3 872 626 285 92 53 chr3 37692964 37693431 -121906352 + RLTR12B LTR ERVK 2 486 -42 3 872 341 301 89 35 chr3 37693469 37693672 -121906111 - MER110-int LTR ERV1 -1858 2789 2576 3 872 480 106 0 0 chr3 37693696 37693781 -121906002 + (TG)n Simple_repeat Simple_repeat 2 86 0 3 872 407 316 61 90 chr3 37693832 37694044 -121905739 - MER58A DNA MER1_type 0 224 19 3 872 464 277 73 0 chr3 37694573 37694710 -121905073 + RSINE1 SINE B4 2 148 -17 3 872 643 216 13 26 chr3 37696479 37696631 -121903152 + RSINE1 SINE B4 3 152 -13 3 872 559 236 43 37 chr3 37696661 37696824 -121902959 - RSINE1 SINE B4 0 165 2 3 872 270 312 36 9 chr3 37696867 37696977 -121902806 - MLT1A1 LTR MaLR -280 128 16 3 872 1158 297 129 21 chr3 37697012 37697525 -121902258 - MLT-int LTR MaLR -39 1696 1129 3 872 231 405 62 33 chr3 37698050 37698290 -121901493 - MLT-int LTR MaLR -640 1095 849 3 872 224 262 12 0 chr3 37698365 37698445 -121901338 + (TG)n Simple_repeat Simple_repeat 1 81 0 3 872 588 234 294 4 chr3 37699198 37699426 -121900357 - MTEa LTR MaLR -85 294 1 3 872 3585 225 66 87 chr3 37699475 37701078 -121898705 - RMER1A Other Other -8 1022 1 3 872 684 0 0 0 chr3 37702660 37702736 -121897047 + (TTCC)n Simple_repeat Simple_repeat 3 78 0 3 872 893 69 0 0 chr3 37702748 37702864 -121896919 - B1_Mus1 SINE Alu -11 137 22 3 872 403 236 5 139 chr3 37703547 37703734 -121896049 + RSINE1 SINE B4 4 165 0 3 872 745 156 0 22 chr3 37703774 37703957 -121895826 + (CA)n Simple_repeat Simple_repeat 1 179 0 3 872 250 335 48 37 chr3 37705112 37705301 -121894482 + L1M5 LINE L1 3450 3640 -2506 3 872 258 181 14 27 chr3 37705319 37705393 -121894390 + A-rich Low_complexity Low_complexity 3 75 0 3 872 23 78 0 0 chr3 37705439 37705490 -121894293 + AT_rich Low_complexity Low_complexity 1 51 0 3 872 316 273 59 29 chr3 37705555 37705691 -121894092 + L1M5 LINE L1 3915 4054 -2092 3 872 285 146 0 0 chr3 37706007 37706055 -121893728 + (CCCCCT)n Simple_repeat Simple_repeat 3 50 0 3 872 431 279 37 37 chr3 37706055 37706189 -121893594 - B1_Mur2 SINE Alu -13 136 3 3 872 396 0 0 0 chr3 37706195 37706239 -121893544 + (TTTG)n Simple_repeat Simple_repeat 2 45 0 3 872 259 226 53 116 chr3 37706242 37706337 -121893446 + Lx8 LINE L1 7242 7330 -143 3 872 956 244 43 67 chr3 37706471 37706680 -121893103 + B4A SINE B4 1 220 -72 3 872 218 0 70 23 chr3 37706680 37706723 -121893060 + (CAA)n Simple_repeat Simple_repeat 2 46 0 3 872 956 244 43 67 chr3 37706723 37706812 -121892971 + B4A SINE B4 221 292 0 3 872 225 154 0 0 chr3 37706819 37706858 -121892925 + (CA)n Simple_repeat Simple_repeat 2 40 0 3 872 24 0 0 0 chr3 37707078 37707102 -121892681 + AT_rich Low_complexity Low_complexity 1 24 0 3 872 562 245 0 101 chr3 37707166 37707325 -121892458 - RSINE1 SINE B4 -21 144 2 3 872 535 231 105 85 chr3 37707503 37707815 -121891968 + MTE2a LTR MaLR 1 405 -14 3 872 992 264 52 77 chr3 37708000 37708037 -121891746 + ORR1E LTR MaLR 4 38 -321 3 872 2525 204 25 129 chr3 37708037 37708719 -121891064 + RMER19C LTR ERVK 1 611 0 3 872 992 264 52 77 chr3 37708719 37708784 -121890999 + ORR1E LTR MaLR 39 101 -258 3 872 1001 168 112 10 chr3 37708784 37708989 -121890794 + URR1A DNA MER1_type 1 226 0 3 872 992 264 52 77 chr3 37708989 37709250 -121890533 + ORR1E LTR MaLR 102 359 0 3 872 488 276 60 44 chr3 37709311 37709493 -121890290 - B4 SINE B4 -82 210 26 3 872 22 35 0 0 chr3 37709542 37709571 -121890212 + AT_rich Low_complexity Low_complexity 1 29 0 3 872 2165 251 27 24 chr3 37709658 37710241 -121889542 - Lx7 LINE L1 -388 7308 6724 3 872 339 272 171 114 chr3 37710852 37710905 -121888878 - B4 SINE B4 -14 278 224 3 872 224 30 30 0 chr3 37710905 37710938 -121888845 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 3 872 339 272 171 114 chr3 37710938 37711112 -121888671 - B4 SINE B4 -69 223 39 3 872 549 0 0 0 chr3 37711225 37711286 -121888497 + (TC)n Simple_repeat Simple_repeat 2 62 0 3 872 324 0 0 0 chr3 37711286 37711321 -121888462 + (TG)n Simple_repeat Simple_repeat 1 36 0 3 872 306 0 0 0 chr3 37711321 37711354 -121888429 + (GA)n Simple_repeat Simple_repeat 1 34 0 3 872 2838 291 181 55 chr3 37711421 37712272 -121887511 - L1M2 LINE L1 -919 5378 4430 3 872 655 208 64 29 chr3 37712272 37712445 -121887338 - B2_Mm2 SINE B2 -16 179 1 3 872 2838 295 86 56 chr3 37712445 37713514 -121886269 - L1M2 LINE L1 -1714 4429 3320 3 872 180 0 0 0 chr3 37714368 37714388 -121885395 + (TGG)n Simple_repeat Simple_repeat 2 21 0 3 872 904 201 18 83 chr3 37715189 37715406 -121884377 + B3 SINE B2 14 216 0 3 872 216 97 0 0 chr3 37716022 37716053 -121883730 + (T)n Simple_repeat Simple_repeat 1 31 0 3 872 547 294 55 26 chr3 37716724 37716949 -121882834 - ID_B1 SINE B4 -37 255 11 3 872 3716 116 2 35 chr3 37717321 37718207 -121881576 + L1VL4 LINE L1 372 1221 -2338 3 872 784 144 52 7 chr3 37718207 37718361 -121881422 + Lx3_Mus LINE L1 6848 7008 -1 3 872 2821 86 0 2 chr3 37718361 37718384 -121881399 + L1VL4 LINE L1 1222 1244 -2315 3 872 468 287 15 37 chr3 37718438 37718572 -121881211 - RSINE1 SINE B4 -31 134 4 3 872 1256 167 151 13 chr3 37719294 37719592 -121880191 + RLTR24 LTR ERV1 191 529 0 3 872 271 268 42 14 chr3 37719818 37719890 -121879893 - PB1D10 SINE Alu -17 100 27 3 872 454 293 88 6 chr3 37720613 37720795 -121878988 + B3A SINE B2 1 197 -1 4 872 1223 212 33 93 chr3 37722661 37722994 -121876789 + MTE2b LTR MaLR 1 313 -66 4 872 1296 260 60 3 chr3 37723427 37723763 -121876020 + MTEb LTR MaLR 12 366 -13 4 872 513 0 0 0 chr3 37724300 37724357 -121875426 + (TCTA)n Simple_repeat Simple_repeat 2 58 0 4 872 804 269 14 5 chr3 37724357 37724559 -121875224 - B3 SINE B2 -11 205 1 4 872 3579 94 65 0 chr3 37725012 37725569 -121874214 - L1_Mus2 LINE L1 -757 5879 5276 4 872 4819 65 2 0 chr3 37725569 37726166 -121873617 + L1_Mus2 LINE L1 5848 6445 -121 4 872 1629 108 14 0 chr3 37726168 37726390 -121873393 + L1_Mm LINE L1 5498 5722 -161 4 872 861 103 14 7 chr3 37726390 37726536 -121873247 + L1_Mus2 LINE L1 6489 6635 -3 4 872 32 0 0 0 chr3 37726536 37726568 -121873215 + AT_rich Low_complexity Low_complexity 1 32 0 4 872 344 300 45 18 chr3 37727748 37727860 -121871923 - PB1D10 SINE Alu -2 115 1 4 872 902 227 61 0 chr3 37728474 37728672 -121871111 - B3 SINE B2 -6 210 1 4 872 180 0 0 0 chr3 37728877 37728897 -121870886 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 4 872 334 284 27 9 chr3 37729010 37729120 -121870663 + PB1D10 SINE Alu 1 112 -5 4 872 2439 57 3 0 chr3 37729907 37730225 -121869558 - ORR1A2 LTR MaLR -8 319 1 4 872 239 263 103 21 chr3 37730349 37730446 -121869337 - ORR1E LTR MaLR -169 190 86 4 872 387 272 39 0 chr3 37731816 37731919 -121867864 - ID_B1 SINE B4 -1 223 117 4 872 505 204 19 0 chr3 37732041 37732149 -121867634 - B1_Mur2 SINE Alu -8 141 32 4 872 351 270 0 26 chr3 37732351 37732465 -121867318 - PB1D10 SINE Alu -5 112 2 4 872 261 0 0 0 chr3 37732764 37732793 -121866990 + (A)n Simple_repeat Simple_repeat 1 29 0 4 872 519 288 52 0 chr3 37733187 37733340 -121866443 + B4 SINE B4 112 272 -20 4 872 564 65 0 0 chr3 37733348 37733425 -121866358 + (CA)n Simple_repeat Simple_repeat 2 78 0 4 872 389 20 20 0 chr3 37733527 37733577 -121866206 + (CA)n Simple_repeat Simple_repeat 2 52 0 4 872 253 329 161 8 chr3 37734103 37734339 -121865444 + MER68 LTR ERVL 274 545 -18 4 872 252 254 93 34 chr3 37734833 37734951 -121864832 + L1M5 LINE L1 5194 5318 -828 4 872 737 225 32 16 chr3 37735331 37735521 -121864262 - B3A SINE B2 0 198 6 4 872 378 0 0 0 chr3 37736125 37736167 -121863616 + (CA)n Simple_repeat Simple_repeat 1 42 0 4 872 1362 181 48 70 chr3 37736881 37737297 -121862486 - RMER17C LTR ERVK -2 408 2 4 872 237 65 0 0 chr3 37737309 37737340 -121862443 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 4 872 225 0 0 0 chr3 37738378 37738403 -121861380 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 4 872 1384 161 236 10 chr3 37739058 37739371 -121860412 + ORR1C2 LTR MaLR 1 384 0 4 872 323 236 76 74 chr3 37739394 37739517 -121860266 - ORR1E LTR MaLR -1 378 254 4 872 1089 272 43 0 chr3 37739512 37739836 -121859947 + MTE2b LTR MaLR 31 368 -11 4 872 586 256 220 5 chr3 37739851 37740051 -121859732 - ORR1E LTR MaLR -115 244 2 4 872 291 54 0 0 chr3 37740116 37740153 -121859630 + (CATATA)n Simple_repeat Simple_repeat 3 39 0 4 872 621 281 31 6 chr3 37741867 37742028 -121857755 + ID_B1 SINE B4 52 216 -8 4 872 216 196 0 42 chr3 37742546 37742594 -121857189 + G-rich Low_complexity Low_complexity 2 47 0 4 872 510 46 0 0 chr3 37742950 37743015 -121856768 + (TC)n Simple_repeat Simple_repeat 2 66 0 4 872 333 0 0 0 chr3 37745071 37745108 -121854675 + (TG)n Simple_repeat Simple_repeat 1 37 0 4 872 486 0 0 0 chr3 37746135 37746189 -121853594 + (TG)n Simple_repeat Simple_repeat 2 55 0 4 872 390 57 0 0 chr3 37746338 37746391 -121853392 + (TG)n Simple_repeat Simple_repeat 2 54 0 4 872 415 255 31 0 chr3 37746400 37746498 -121853285 - RSINE1 SINE B4 -62 103 3 4 872 321 244 24 24 chr3 37747463 37747547 -121852236 - RSINE1 SINE B4 -81 84 1 4 872 705 272 197 26 chr3 37747742 37748418 -121851365 - L1M3 LINE L1 -734 5437 4627 4 872 724 251 26 20 chr3 37748422 37748617 -121851166 + B3A SINE B2 3 198 -18 4 13 1436 282 92 67 chr3 37748684 37749852 -121849931 - L1M3 LINE L1 -1623 4517 3321 4 873 2488 278 87 22 chr3 37749872 37750753 -121849030 - Lx6 LINE L1 -27 7433 6288 4 873 337 98 33 0 chr3 37750762 37750823 -121848960 - L1_Mus3 LINE L1 -87 6551 6489 4 873 1204 49 0 0 chr3 37750812 37750954 -121848829 - L1_Mus2 LINE L1 -833 5733 5592 4 873 15358 175 39 31 chr3 37750962 37751421 -121848362 - L1_Mur2 LINE L1 -1360 4517 4069 4 873 3147 20 0 0 chr3 37751421 37751767 -121848016 - ORR1A0 LTR MaLR 0 346 1 4 873 15358 180 42 34 chr3 37751767 37755022 -121844761 - L1_Mur2 LINE L1 -1809 4068 892 4 873 1548 192 134 36 chr3 37755106 37755463 -121844320 - ORR1B1 LTR MaLR -2 392 1 4 873 5334 192 58 14 chr3 37755463 37755683 -121844100 - ORR1B1-int LTR MaLR 0 1509 1292 4 873 180 0 0 0 chr3 37755683 37755703 -121844080 + (TA)n Simple_repeat Simple_repeat 2 21 0 4 873 5334 192 58 14 chr3 37755703 37756735 -121843048 - ORR1B1-int LTR MaLR -218 1291 202 4 873 340 286 70 59 chr3 37757241 37757512 -121842271 + L1M5 LINE L1 4907 5180 -966 4 873 528 30 0 0 chr3 37758522 37758588 -121841195 + (CA)n Simple_repeat Simple_repeat 1 66 0 4 873 788 71 9 0 chr3 37758640 37758752 -121841031 + (TCC)n Simple_repeat Simple_repeat 2 114 0 4 873 474 284 50 113 chr3 37758754 37758976 -121840807 - ID_B1 SINE B4 -15 209 2 4 873 559 257 40 0 chr3 37760386 37760538 -121839245 + RSINE1 SINE B4 4 161 -4 4 873 3004 193 76 0 chr3 37760738 37761379 -121838404 - Lx9 LINE L1 -1 7643 6954 4 873 462 264 124 12 chr3 37761411 37761572 -121838211 - B3 SINE B2 -37 179 1 4 873 14266 142 27 15 chr3 37762002 37765416 -121834367 - Lx3C LINE L1 -1 6975 3521 4 873 1716 301 93 41 chr3 37765427 37766240 -121833543 - Lx9 LINE L1 -24 7620 6765 4 873 447 73 0 0 chr3 37766538 37766606 -121833177 + (TG)n Simple_repeat Simple_repeat 2 69 0 4 873 389 350 0 86 chr3 37766606 37766781 -121833002 - RSINE1 SINE B4 -2 163 4 4 873 2256 158 22 0 chr3 37766851 37767219 -121832564 - ORR1C1 LTR MaLR 0 378 3 4 873 546 16 0 0 chr3 37768841 37768904 -121830879 + (CA)n Simple_repeat Simple_repeat 1 63 0 4 873 324 253 0 0 chr3 37768936 37769011 -121830772 + L1MA4 LINE L1 6226 6300 0 4 873 256 221 56 20 chr3 37769016 37769105 -121830678 + L1M2 LINE L1 5599 5685 -627 4 873 803 252 61 55 chr3 37769271 37769374 -121830409 + ORR1E LTR MaLR 42 148 -211 4 873 531 0 0 0 chr3 37769374 37769433 -121830350 + (TCTA)n Simple_repeat Simple_repeat 4 62 0 4 873 803 252 61 55 chr3 37769433 37769640 -121830143 + ORR1E LTR MaLR 149 353 -6 4 873 23 0 0 0 chr3 37769839 37769862 -121829921 + AT_rich Low_complexity Low_complexity 1 23 0 4 873 342 0 0 0 chr3 37770013 37770051 -121829732 + (TG)n Simple_repeat Simple_repeat 1 38 0 4 873 396 59 0 0 chr3 37770051 37770102 -121829681 + (GA)n Simple_repeat Simple_repeat 2 52 0 4 873 697 273 93 22 chr3 37770286 37770511 -121829272 - B4 SINE B4 -44 248 8 4 873 1624 238 129 37 chr3 37770915 37771403 -121828380 + MT2A LTR ERVL 1 533 0 4 873 239 231 0 0 chr3 37771785 37771837 -121827946 + (TCCA)n Simple_repeat Simple_repeat 4 55 0 4 873 279 0 0 0 chr3 37773318 37773349 -121826434 + (TC)n Simple_repeat Simple_repeat 2 32 0 4 873 441 36 0 0 chr3 37773350 37773405 -121826378 + (CA)n Simple_repeat Simple_repeat 2 56 0 4 873 312 137 0 0 chr3 37774104 37774155 -121825628 + (CA)n Simple_repeat Simple_repeat 1 51 0 4 873 687 120 0 0 chr3 37774168 37774276 -121825507 + (GA)n Simple_repeat Simple_repeat 1 108 0 4 873 1067 101 13 0 chr3 37775746 37775905 -121823878 + B2_Mm2 SINE B2 1 161 -34 4 873 198 0 0 0 chr3 37775905 37775927 -121823856 + (TAAA)n Simple_repeat Simple_repeat 3 24 0 4 873 255 196 0 0 chr3 37776118 37776169 -121823614 - B3 SINE B2 -137 79 29 4 873 492 279 16 0 chr3 37776319 37776441 -121823342 - B1F SINE Alu -6 143 20 4 873 22 0 0 0 chr3 37778578 37778600 -121821183 + AT_rich Low_complexity Low_complexity 1 22 0 4 873 1780 301 42 14 chr3 37778633 37778986 -121820797 - Lx5 LINE L1 -48 7002 6630 4 873 495 0 0 0 chr3 37778986 37779041 -121820742 + (TG)n Simple_repeat Simple_repeat 2 56 0 4 873 1780 301 42 14 chr3 37779041 37779189 -121820594 - Lx5 LINE L1 -421 6629 6488 4 873 243 0 0 0 chr3 37779191 37779218 -121820565 + (CA)n Simple_repeat Simple_repeat 2 28 0 4 873 807 279 27 111 chr3 37780008 37780410 -121819373 + MTD LTR MaLR 19 389 -30 4 873 3326 46 5 0 chr3 37780574 37780968 -121818815 - MTA_Mm LTR MaLR 0 396 1 4 873 557 260 73 24 chr3 37782060 37782265 -121817518 - ID_B1 SINE B4 -8 216 2 4 873 512 285 22 30 chr3 37782295 37782429 -121817354 - ID_B1 SINE B4 -8 216 84 4 873 502 310 102 16 chr3 37782784 37783030 -121816753 + L1MCb LINE L1 531 797 -5248 4 873 263 274 6 11 chr3 37783602 37783782 -121816001 + GA-rich Low_complexity Low_complexity 1 178 0 4 873 360 0 0 0 chr3 37783917 37783957 -121815826 + (CA)n Simple_repeat Simple_repeat 2 41 0 4 873 29 70 0 0 chr3 37784553 37784610 -121815173 + AT_rich Low_complexity Low_complexity 1 57 0 4 873 609 229 186 53 chr3 37785331 37785650 -121814133 + MTD LTR MaLR 1 404 -15 4 873 522 0 0 0 chr3 37785688 37785746 -121814037 + (CA)n Simple_repeat Simple_repeat 1 58 0 4 873 203 0 0 36 chr3 37785978 37786006 -121813777 + (CAAAAA)n Simple_repeat Simple_repeat 2 28 0 4 873 423 278 124 12 chr3 37786095 37786353 -121813430 - Charlie7 DNA MER1_type -685 1927 1641 4 873 213 146 0 68 chr3 37786366 37786410 -121813373 + T-rich Low_complexity Low_complexity 3 43 0 4 873 216 67 0 0 chr3 37786410 37786440 -121813343 + (CAAAA)n Simple_repeat Simple_repeat 3 32 0 4 873 600 298 49 31 chr3 37788302 37788527 -121811256 + B4 SINE B4 2 230 -62 4 873 220 294 0 14 chr3 37788660 37788729 -121811054 + (CATA)n Simple_repeat Simple_repeat 4 71 0 4 873 1898 202 80 19 chr3 37788789 37789313 -121810470 + RLTR20B2 LTR ERVK 1 556 -4 5 873 819 0 0 0 chr3 37789436 37789527 -121810256 + (GGGAGA)n Simple_repeat Simple_repeat 1 91 0 5 873 320 221 22 44 chr3 37789833 37789923 -121809860 + MYSERV16_I-int LTR ERVK 1028 1115 -1727 5 873 2276 177 73 39 chr3 37790273 37790957 -121808826 + MYSERV16_I-int LTR ERVK 1 932 -1394 5 873 6407 151 29 44 chr3 37790962 37792241 -121807542 + MYSERV16_I-int LTR ERVK 1067 2326 0 5 873 572 184 312 6 chr3 37792241 37792411 -121807372 + RLTR20B2 LTR ERVK 4 225 -335 5 873 937 223 124 50 chr3 37792821 37793119 -121806664 + ORR1E LTR MaLR 1 320 -39 5 873 714 43 0 0 chr3 37796305 37796399 -121803384 + (TTGGGG)n Simple_repeat Simple_repeat 1 94 0 5 873 213 39 0 0 chr3 37796816 37796842 -121802941 + (TG)n Simple_repeat Simple_repeat 1 26 0 5 873 265 307 9 47 chr3 37796842 37796948 -121802835 - PB1D10 SINE Alu -15 102 1 5 873 1255 187 52 99 chr3 37797289 37797447 -121802336 - RMER17C LTR ERVK -8 402 232 5 873 198 0 0 0 chr3 37797447 37797469 -121802314 + (GA)n Simple_repeat Simple_repeat 1 22 0 5 873 1255 187 52 99 chr3 37797469 37797732 -121802051 - RMER17C LTR ERVK -179 231 1 5 873 246 250 15 0 chr3 37798531 37798599 -121801184 + Lx7 LINE L1 7611 7679 -17 5 873 10086 190 34 23 chr3 37798605 37801035 -121798748 + Lx7 LINE L1 4901 7364 -332 5 873 394 17 83 0 chr3 37801035 37801095 -121798688 + (TCTCTG)n Simple_repeat Simple_repeat 2 66 0 5 873 10086 203 30 32 chr3 37801095 37801444 -121798339 + Lx7 LINE L1 7365 7696 0 5 873 549 279 175 0 chr3 37801622 37801862 -121797921 + B4A SINE B4 1 282 -10 5 873 648 239 169 41 chr3 37802795 37803061 -121796722 - RMER15 LTR ERVL -1 574 275 5 873 441 0 0 0 chr3 37803527 37803576 -121796207 + (TTA)n Simple_repeat Simple_repeat 2 50 0 5 873 333 228 44 43 chr3 37804469 37804629 -121795154 + L1MB3 LINE L1 6022 6183 0 5 873 346 256 35 11 chr3 37804762 37804849 -121794934 + B4 SINE B4 198 286 -6 5 873 1036 50 0 7 chr3 37805483 37805623 -121794160 + L1Md_F3 LINE L1 6443 6581 -3 5 873 310 399 155 0 chr3 37808041 37808299 -121791484 + Tigger7 DNA MER2_type 2 299 -2192 5 873 1087 271 84 51 chr3 37808370 37808763 -121791020 - MTD LTR MaLR -13 406 1 5 873 360 316 30 42 chr3 37808768 37808933 -121790850 + Tigger7 DNA MER2_type 2329 2491 0 5 873 2830 47 6 3 chr3 37809385 37809729 -121790054 - ORR1A1 LTR MaLR 0 346 2 5 873 716 272 24 0 chr3 37810092 37810261 -121789522 + B3A SINE B2 3 175 -23 5 873 234 0 0 0 chr3 37810262 37810288 -121789495 + (CA)n Simple_repeat Simple_repeat 1 26 0 5 873 437 288 71 8 chr3 37810870 37810996 -121788787 + ID_B1 SINE B4 80 213 -11 5 873 423 0 0 0 chr3 37811251 37811298 -121788485 + (TG)n Simple_repeat Simple_repeat 1 47 0 5 873 922 268 24 38 chr3 37811319 37811610 -121788173 - B4 SINE B4 -4 288 2 5 873 850 231 56 10 chr3 37811881 37812078 -121787705 - B3 SINE B2 -8 208 3 5 873 22 0 0 0 chr3 37812270 37812292 -121787491 + AT_rich Low_complexity Low_complexity 1 22 0 5 873 21 36 0 0 chr3 37812317 37812345 -121787438 + AT_rich Low_complexity Low_complexity 1 28 0 5 873 2882 201 43 34 chr3 37812794 37813024 -121786759 - Lx5 LINE L1 -2 7048 6822 5 873 702 0 0 0 chr3 37813024 37813102 -121786681 + (CAGG)n Simple_repeat Simple_repeat 1 78 0 5 873 2882 201 43 34 chr3 37813102 37813495 -121786288 - Lx5 LINE L1 -229 6821 6420 5 873 4502 152 74 13 chr3 37813507 37814343 -121785440 + Lx5 LINE L1 5587 6456 -594 5 873 276 200 0 0 chr3 37815569 37815639 -121784144 + T-rich Low_complexity Low_complexity 94 163 0 5 873 1095 114 0 0 chr3 37815639 37815805 -121783978 + (TTCC)n Simple_repeat Simple_repeat 3 168 0 5 873 298 168 27 169 chr3 37817299 37817409 -121782374 - MTD LTR MaLR -2 417 325 5 873 670 268 41 12 chr3 37817407 37817577 -121782206 - MTD LTR MaLR -224 195 21 5 873 468 0 0 0 chr3 37817577 37817629 -121782154 + (CAAAA)n Simple_repeat Simple_repeat 5 56 0 5 873 23 33 0 0 chr3 37817694 37817724 -121782059 + AT_rich Low_complexity Low_complexity 1 30 0 5 873 978 227 162 7 chr3 37818680 37818982 -121780801 - ORR1E LTR MaLR -4 355 7 5 873 563 259 25 15 chr3 37819126 37819247 -121780536 - RMER10B LTR ERVL -1 397 276 5 873 692 43 0 11 chr3 37819247 37819340 -121780443 + (GA)n Simple_repeat Simple_repeat 1 92 0 5 873 563 259 25 15 chr3 37819340 37819418 -121780365 - RMER10B LTR ERVL -123 275 196 5 873 572 71 0 12 chr3 37819418 37819446 -121780337 + (GAA)n Simple_repeat Simple_repeat 3 30 0 5 873 1620 0 0 0 chr3 37819446 37819626 -121780157 + (GGAGAA)n Simple_repeat Simple_repeat 1 180 0 5 873 572 71 0 12 chr3 37819626 37819682 -121780101 + (GAA)n Simple_repeat Simple_repeat 1 55 0 5 873 1257 199 21 7 chr3 37819682 37819970 -121779813 - RMER10A LTR ERVL -145 297 6 5 873 371 350 39 43 chr3 37820495 37820752 -121779031 + MLT1D LTR MaLR 198 453 -52 5 873 375 310 31 0 chr3 37821369 37821498 -121778285 + MLT1A0 LTR MaLR 233 365 0 5 873 571 323 95 27 chr3 37821956 37822357 -121777426 + L1MB1 LINE L1 5536 5963 -226 5 873 232 167 29 57 chr3 37822543 37822613 -121777170 + (CAGAGA)n Simple_repeat Simple_repeat 2 69 0 5 873 393 288 124 47 chr3 37822819 37823012 -121776771 + L1MA10 LINE L1 6114 6321 -13 5 873 35 0 0 0 chr3 37825007 37825042 -121774741 + AT_rich Low_complexity Low_complexity 1 35 0 5 873 573 133 31 6 chr3 37825042 37825201 -121774582 + (TG)n Simple_repeat Simple_repeat 2 164 0 5 873 772 292 27 27 chr3 37825300 37825596 -121774187 - L1MA4 LINE L1 -373 5927 5632 5 873 216 0 0 0 chr3 37825602 37825626 -121774157 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 5 873 1361 252 11 45 chr3 37825748 37826130 -121773653 + MTD LTR MaLR 51 419 0 5 873 585 94 0 0 chr3 37828687 37828772 -121771011 + (TCC)n Simple_repeat Simple_repeat 3 87 0 5 873 240 196 0 0 chr3 37830109 37830160 -121769623 - L1M4 LINE L1 -361 5823 5773 5 873 3620 250 34 45 chr3 37830165 37830278 -121769505 - RMER1C Other Other -9 1333 1217 5 873 234 0 0 0 chr3 37830278 37830304 -121769479 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 5 873 3620 252 34 45 chr3 37830304 37831170 -121768613 - RMER1C Other Other -126 1216 377 5 873 702 316 100 59 chr3 37831204 37831765 -121768018 - L1M2 LINE L1 -852 5034 4451 5 873 417 129 0 0 chr3 37831822 37831892 -121767891 + (TG)n Simple_repeat Simple_repeat 1 70 0 5 873 867 319 11 18 chr3 37831907 37832188 -121767595 - B4A SINE B4 -13 279 1 5 873 410 256 67 52 chr3 37832188 37832382 -121767401 - L1M2 LINE L1 -1656 4484 4288 5 873 803 272 139 133 chr3 37832441 37832940 -121766843 - L1M2 LINE L1 -2130 4013 3518 5 873 477 0 0 0 chr3 37832940 37832993 -121766790 + (TG)n Simple_repeat Simple_repeat 2 54 0 5 873 803 272 139 133 chr3 37832993 37833132 -121766651 - L1M2 LINE L1 -2626 3517 3371 5 873 442 276 24 16 chr3 37833146 37833271 -121766512 + MTEa LTR MaLR 1 126 -253 5 873 457 298 8 0 chr3 37833344 37833468 -121766315 + MT2A LTR ERVL 245 369 -164 5 873 229 234 91 0 chr3 37833481 37833558 -121766225 + MLT2B2 LTR ERVL 476 559 -3 5 873 328 244 52 9 chr3 37833565 37833681 -121766102 - L1_Mur3 LINE L1 -2554 3326 3206 5 873 744 12 0 0 chr3 37834556 37834641 -121765142 + (TC)n Simple_repeat Simple_repeat 2 86 0 5 873 721 257 12 6 chr3 37835617 37835789 -121763994 - B3A SINE B2 -25 173 1 5 873 288 311 114 59 chr3 37835797 37836016 -121763767 - MIR SINE MIR -26 236 6 5 873 405 70 0 0 chr3 37836208 37836265 -121763518 + (TG)n Simple_repeat Simple_repeat 2 58 0 5 873 285 98 0 0 chr3 37838141 37838182 -121761601 + (CGTG)n Simple_repeat Simple_repeat 2 42 0 5 873 663 243 59 10 chr3 37838488 37838692 -121761091 - L1MA7 LINE L1 -2 6289 6076 5 873 281 204 0 0 chr3 37838687 37838741 -121761042 + L1M3 LINE L1 5107 5160 -980 5 873 262 0 0 50 chr3 37838750 37838790 -121760993 + (CAAAA)n Simple_repeat Simple_repeat 2 39 0 5 873 287 109 0 45 chr3 37838806 37838873 -121760910 + (CAAA)n Simple_repeat Simple_repeat 2 65 0 5 873 249 237 217 51 chr3 37838879 37839017 -121760766 + L1M3 LINE L1 5178 5341 -802 5 873 528 30 0 0 chr3 37840324 37840390 -121759393 + (CA)n Simple_repeat Simple_repeat 2 67 0 5 873 457 327 53 49 chr3 37840628 37840892 -121758891 + B4A SINE B4 5 269 -23 5 873 3230 53 2 5 chr3 37841129 37841526 -121758257 + MTA_Mm LTR MaLR 1 396 0 5 873 608 216 78 24 chr3 37841579 37841745 -121758038 - MTD LTR MaLR -21 398 224 5 873 358 190 142 33 chr3 37841767 37841887 -121757896 - MTD LTR MaLR -284 135 3 5 873 210 309 0 0 chr3 37843509 37843564 -121756219 - PB1D9 SINE Alu -65 55 1 5 873 36169 76 5 6 chr3 37843607 37849771 -121750012 - L1Md_F2 LINE L1 0 6582 446 5 873 213 178 0 0 chr3 37849855 37849900 -121749883 + CT-rich Low_complexity Low_complexity 2 46 0 5 873 1021 265 58 61 chr3 37849900 37850246 -121749537 - ORR1E LTR MaLR -9 350 6 5 873 357 269 38 69 chr3 37850969 37851129 -121748654 - MER53 DNA hAT -29 164 10 5 873 351 325 111 64 chr3 37851164 37851592 -121748191 + MLT1H LTR MaLR 59 485 -4 5 873 580 310 122 30 chr3 37852416 37852745 -121747038 - ORR1E LTR MaLR 0 359 1 5 873 3075 314 131 15 chr3 37852745 37854110 -121745673 - ORR1E-int LTR MaLR -53 1527 2 5 873 511 352 55 55 chr3 37854115 37854461 -121745322 - ORR1E LTR MaLR -6 353 8 5 873 1712 222 28 3 chr3 37854595 37854951 -121744832 - MTC LTR MaLR -56 365 1 5 873 294 385 80 42 chr3 37856348 37856660 -121743123 - ORR1E LTR MaLR -35 324 1 5 873 232 204 82 0 chr3 37856892 37856941 -121742842 - MTC LTR MaLR -2 419 367 5 873 1025 200 18 18 chr3 37856933 37857152 -121742631 - MTC LTR MaLR -202 219 1 5 873 720 64 0 0 chr3 37857234 37857328 -121742455 + (GGAAA)n Simple_repeat Simple_repeat 3 96 0 5 873 200 357 0 0 chr3 37857557 37857627 -121742156 + L2b LINE L2 3076 3145 -230 5 873 189 107 0 0 chr3 37858062 37858090 -121741693 + (A)n Simple_repeat Simple_repeat 1 28 0 5 873 323 214 0 9 chr3 37858134 37858224 -121741559 - B3 SINE B2 -86 130 1 5 873 23 68 0 0 chr3 37859131 37859175 -121740608 + AT_rich Low_complexity Low_complexity 1 44 0 5 873 183 156 0 0 chr3 37859467 37859499 -121740284 + (GGGTG)n Simple_repeat Simple_repeat 4 35 0 5 873 513 0 0 0 chr3 37859725 37859782 -121740001 + (CA)n Simple_repeat Simple_repeat 1 57 0 5 873 234 0 0 0 chr3 37859790 37859816 -121739967 + (CAG)n Simple_repeat Simple_repeat 1 26 0 5 873 380 273 11 28 chr3 37860344 37860521 -121739262 + (TG)n Simple_repeat Simple_repeat 1 174 0 5 873 599 309 119 8 chr3 37860531 37860782 -121739001 - B4A SINE B4 -7 285 7 5 873 680 261 38 5 chr3 37862337 37862522 -121737261 + B4 SINE B4 26 216 -76 5 873 226 302 85 44 chr3 37864967 37865119 -121734664 - MIRb SINE MIR -89 179 31 6 873 306 431 0 0 chr3 37865151 37865325 -121734458 + (CTCG)n Simple_repeat Simple_repeat 2 175 0 6 873 339 429 0 0 chr3 37865536 37865699 -121734084 + (CCTG)n Simple_repeat Simple_repeat 4 166 0 6 873 21 0 0 0 chr3 37866731 37866752 -121733031 + AT_rich Low_complexity Low_complexity 1 21 0 6 873 321 301 58 21 chr3 37866962 37867152 -121732631 + L1MD LINE L1 4125 4321 -1825 6 873 725 216 68 0 chr3 37868212 37868374 -121731409 - ORR1D2 LTR MaLR 0 370 198 6 873 482 284 62 40 chr3 37868604 37868780 -121731003 - B3A SINE B2 -16 182 3 6 873 293 270 10 0 chr3 37868805 37868905 -121730878 + (TG)n Simple_repeat Simple_repeat 2 102 0 6 873 1862 195 61 21 chr3 37869115 37869540 -121730243 + RMER20A LTR ERVK 1 442 -74 6 873 357 274 98 0 chr3 37871186 37871288 -121728495 - PB1D7 SINE Alu -3 117 6 6 873 522 0 0 0 chr3 37871347 37871405 -121728378 + (TC)n Simple_repeat Simple_repeat 1 58 0 6 873 388 329 19 0 chr3 37871857 37872012 -121727771 - MER2 DNA MER2_type -6 339 182 6 873 450 351 12 0 chr3 37872232 37872400 -121727383 + MLT1A0 LTR MaLR 139 308 -57 6 873 1107 0 0 0 chr3 37872487 37872610 -121727173 + (TTCTC)n Simple_repeat Simple_repeat 5 127 0 6 873 545 0 15 0 chr3 37872610 37872675 -121727108 + (TCCC)n Simple_repeat Simple_repeat 4 69 0 6 873 272 330 9 0 chr3 37872693 37872799 -121726984 - PB1D10 SINE Alu 0 117 11 6 873 407 260 58 58 chr3 37873132 37873320 -121726463 - L1MA4 LINE L1 -402 5898 5711 6 873 304 310 72 48 chr3 37873412 37873619 -121726164 - L1M4 LINE L1 -696 5482 5271 6 873 688 248 107 19 chr3 37874601 37874797 -121724986 - B4 SINE B4 -3 289 78 6 873 561 68 0 0 chr3 37874797 37874871 -121724912 + (TATG)n Simple_repeat Simple_repeat 4 77 0 6 873 688 248 107 19 chr3 37874871 37874937 -121724846 - B4 SINE B4 -215 77 5 6 873 210 216 40 0 chr3 37875176 37875250 -121724533 + A-rich Low_complexity Low_complexity 2 78 0 6 873 513 71 0 0 chr3 37875242 37875312 -121724471 + (GGA)n Simple_repeat Simple_repeat 2 71 0 6 873 207 88 0 0 chr3 37876045 37876079 -121723704 + (T)n Simple_repeat Simple_repeat 1 34 0 6 873 297 0 0 0 chr3 37877040 37877073 -121722710 + (CA)n Simple_repeat Simple_repeat 1 33 0 6 873 381 291 32 19 chr3 37878117 37878331 -121721452 + (CCCA)n Simple_repeat Simple_repeat 1 216 0 6 873 508 228 52 59 chr3 37878530 37878665 -121721118 + B1F SINE Alu 1 134 -15 6 873 274 288 53 8 chr3 37879580 37879713 -121720070 - L1M2 LINE L1 -688 5612 5474 6 874 291 276 112 46 chr3 37879952 37880104 -121719679 - Lx5 LINE L1 -1138 5912 5751 6 874 317 226 0 7 chr3 37880141 37880288 -121719495 + (TG)n Simple_repeat Simple_repeat 2 147 0 6 874 260 250 90 63 chr3 37880380 37880491 -121719292 - PB1D9 SINE Alu -1 119 6 6 874 1299 161 24 12 chr3 37880896 37881148 -121718635 + RLTR12A LTR ERVK 1 255 -313 6 874 342 0 0 0 chr3 37881189 37881227 -121718556 + (CA)n Simple_repeat Simple_repeat 1 38 0 6 874 990 246 9 0 chr3 37881782 37881993 -121717790 - B3 SINE B2 -1 215 3 6 874 214 70 0 85 chr3 37882906 37882929 -121716854 + (TAA)n Simple_repeat Simple_repeat 3 25 0 6 874 279 0 0 0 chr3 37882929 37882960 -121716823 + (TTA)n Simple_repeat Simple_repeat 1 31 0 6 874 214 70 0 85 chr3 37882960 37882983 -121716800 + (TAA)n Simple_repeat Simple_repeat 2 21 0 6 874 350 329 124 9 chr3 37883563 37883796 -121715987 + MLT1D LTR MaLR 211 470 -35 6 874 362 239 57 0 chr3 37884283 37884371 -121715412 + B3A SINE B2 2 94 -104 6 874 619 284 31 89 chr3 37884385 37884799 -121714984 - RMER10A LTR ERVL -26 416 27 6 874 355 296 23 31 chr3 37884811 37884940 -121714843 + B3 SINE B2 89 216 0 6 874 499 325 60 46 chr3 37887827 37888111 -121711672 + B4A SINE B4 1 288 -4 6 874 273 198 0 0 chr3 37888291 37888372 -121711411 + (CA)n Simple_repeat Simple_repeat 2 82 0 6 874 4509 36 6 0 chr3 37888413 37888943 -121710840 - L1Md_F2 LINE L1 0 6582 6050 6 874 721 221 179 22 chr3 37889970 37890238 -121709545 + MTE2a LTR MaLR 70 379 0 6 874 3189 229 175 62 chr3 37892369 37893643 -121706140 - RMER1A Other Other 0 1030 2 6 874 253 230 62 103 chr3 37894520 37894617 -121705166 - B4A SINE B4 0 292 200 6 874 291 189 28 42 chr3 37895795 37895867 -121703916 - Charlie12 DNA MER1_type -3 2870 2800 6 874 342 0 0 0 chr3 37895884 37895922 -121703861 + (TG)n Simple_repeat Simple_repeat 2 39 0 6 874 260 268 54 40 chr3 37895942 37896016 -121703767 + RMER30 DNA MER1_type 18 92 -110 6 874 1194 202 45 26 chr3 37896019 37896288 -121703495 + B4A SINE B4 1 274 -18 6 874 25 31 0 0 chr3 37896814 37896846 -121702937 + AT_rich Low_complexity Low_complexity 1 32 0 6 874 1542 239 116 8 chr3 37897844 37897881 -121701902 - MT2A LTR ERVL -9 524 488 6 874 546 91 0 0 chr3 37897881 37897958 -121701825 + (CA)n Simple_repeat Simple_repeat 2 78 0 6 874 1542 239 116 8 chr3 37897958 37898393 -121701390 - MT2A LTR ERVL -46 487 2 6 874 378 61 0 0 chr3 37898435 37898484 -121701299 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 6 874 2400 211 160 75 chr3 37898756 37899683 -121700100 + RMER1B Other Other 208 1066 0 6 874 2423 96 9 3 chr3 37900488 37900813 -121698970 + ORR1A2 LTR MaLR 1 327 0 6 874 494 271 19 89 chr3 37901700 37901712 -121698071 - B3A SINE B2 -24 174 163 6 874 273 118 0 0 chr3 37901712 37901763 -121698020 + (TCTG)n Simple_repeat Simple_repeat 4 54 0 6 874 494 271 19 89 chr3 37901763 37901908 -121697875 - B3A SINE B2 -36 162 28 6 874 521 274 107 52 chr3 37902005 37902275 -121697508 - B4A SINE B4 -4 288 4 6 874 408 97 0 0 chr3 37902306 37902368 -121697415 + (TTA)n Simple_repeat Simple_repeat 1 62 0 6 874 230 0 0 32 chr3 37902504 37902535 -121697248 + (TTA)n Simple_repeat Simple_repeat 2 31 0 6 874 381 294 47 8 chr3 37904673 37904800 -121694983 + B1F SINE Alu 17 148 -1 6 874 276 292 211 107 chr3 37906326 37906390 -121693393 + MLT1A0 LTR MaLR 1 52 -322 6 874 700 204 101 10 chr3 37906390 37906588 -121693195 - B3 SINE B2 0 216 1 6 874 369 292 211 107 chr3 37906588 37906803 -121692980 + MLT1A0 LTR MaLR 53 309 -65 6 874 367 291 264 68 chr3 37907043 37907374 -121692409 - MTE2b LTR MaLR -14 405 10 6 874 25 0 0 0 chr3 37909197 37909222 -121690561 + AT_rich Low_complexity Low_complexity 1 25 0 6 874 186 143 0 0 chr3 37909742 37909777 -121690006 + (TA)n Simple_repeat Simple_repeat 2 36 0 6 874 302 248 130 16 chr3 37909849 37909972 -121689811 - Lx7 LINE L1 0 7696 7560 6 874 261 0 0 0 chr3 37910030 37910059 -121689724 + (CAAA)n Simple_repeat Simple_repeat 4 32 0 6 874 2761 204 101 16 chr3 37910069 37910686 -121689097 - Lx7 LINE L1 -286 7410 6742 6 874 361 281 129 7 chr3 37910694 37910841 -121688942 + L1M2 LINE L1 5452 5616 -684 6 874 610 249 97 138 chr3 37911116 37911414 -121688369 - RLTR11A2 LTR ERVK -167 286 1 6 874 582 15 0 0 chr3 37911734 37911801 -121687982 + (CA)n Simple_repeat Simple_repeat 2 68 0 6 874 693 211 287 0 chr3 37912494 37912705 -121687078 + MTE2b LTR MaLR 1 271 -108 6 874 966 240 9 9 chr3 37912864 37913074 -121686709 - B3 SINE B2 -5 211 2 6 874 801 31 0 0 chr3 37913459 37913555 -121686228 + (TTCC)n Simple_repeat Simple_repeat 1 96 0 6 874 356 233 23 17 chr3 37913572 37913747 -121686036 + CT-rich Low_complexity Low_complexity 1 176 0 6 874 25 0 0 0 chr3 37915732 37915757 -121684026 + AT_rich Low_complexity Low_complexity 1 25 0 6 874 1164 15 0 0 chr3 37915905 37916039 -121683744 + (GA)n Simple_repeat Simple_repeat 1 134 0 6 874 620 221 13 25 chr3 37916046 37916204 -121683579 - ORR1D1 LTR MaLR -218 156 1 6 874 393 319 36 12 chr3 37916722 37916890 -121682893 + ID_B1 SINE B4 2 173 -51 6 874 245 329 0 79 chr3 37916824 37916913 -121682870 + PB1D10 SINE Alu 27 108 -9 6 874 874 232 14 9 chr3 37916948 37917170 -121682613 + RLTR11A2 LTR ERVK 305 527 0 6 874 1459 166 34 8 chr3 37917171 37917438 -121682345 + L1_Mur3 LINE L1 4606 4879 -1001 6 874 711 229 15 1 chr3 37917432 37917609 -121682174 + Lx6 LINE L1 6760 6891 -569 6 874 341 215 108 0 chr3 37917631 37917724 -121682059 + Lx7 LINE L1 6894 6996 -700 6 874 441 54 0 0 chr3 37917735 37917791 -121681992 + (TGG)n Simple_repeat Simple_repeat 1 56 0 6 874 294 29 0 0 chr3 37917793 37917828 -121681955 + (TG)n Simple_repeat Simple_repeat 1 35 0 6 874 5138 129 0 5 chr3 37917869 37918610 -121681173 - RMER19A LTR ERVK 0 737 1 6 874 12550 75 20 13 chr3 37918616 37920213 -121679570 - L1Md_T LINE L1 0 6582 5608 6 874 3500 25 2 0 chr3 37920213 37920608 -121679175 + MTA_Mm LTR MaLR 1 396 0 6 874 9180 40 3 1 chr3 37920608 37921704 -121678079 + MTA_Mm-int LTR MaLR 1 1098 0 6 874 3487 28 2 0 chr3 37921704 37922099 -121677684 + MTA_Mm LTR MaLR 1 396 0 6 874 12550 28 2 6 chr3 37922099 37923277 -121676506 - L1Md_T LINE L1 -276 5607 4429 6 874 38626 46 2 7 chr3 37923294 37929478 -121670305 - L1Md_F2 LINE L1 0 6582 441 6 874 4390 200 73 13 chr3 37929490 37930599 -121669184 - L1_Mur3 LINE L1 -4435 1445 275 6 874 369 0 0 0 chr3 37930613 37930654 -121669129 + (TTA)n Simple_repeat Simple_repeat 2 42 0 6 874 1218 232 6 51 chr3 37930691 37931045 -121668738 - RLTR31_Mur LTR ERVK -215 338 1 6 874 881 198 0 49 chr3 37931049 37931272 -121668511 - RMER3D-int LTR ERVK -5 2837 2626 6 874 2260 264 74 48 chr3 37931273 37931364 -121668419 - L1_Rod LINE L1 -3646 2201 2114 6 874 1471 42 119 0 chr3 37931364 37931557 -121668226 - L1Md_A LINE L1 -1 6581 6366 6 874 2260 261 64 32 chr3 37931557 37932724 -121667059 - L1_Rod LINE L1 -3734 2113 900 6 874 191 292 9 0 chr3 37932912 37933018 -121666765 + GA-rich Low_complexity Low_complexity 3 109 0 6 874 212 259 17 0 chr3 37935260 37935318 -121664465 + CT-rich Low_complexity Low_complexity 5 63 0 6 874 990 245 30 23 chr3 37935507 37935770 -121664013 - Lx7 LINE L1 -623 7073 6809 6 874 486 245 212 0 chr3 37935810 37935994 -121663789 + Lx7 LINE L1 7145 7367 -329 6 874 423 0 0 0 chr3 37936006 37936053 -121663730 + (TTA)n Simple_repeat Simple_repeat 3 49 0 6 874 2200 162 33 53 chr3 37936107 37936653 -121663130 + RLTR31_Mm LTR ERVK 3 537 -24 7 874 599 256 9 83 chr3 37936651 37936868 -121662915 + RLTR31_Mm LTR ERVK 361 561 0 7 874 1419 155 46 25 chr3 37936872 37937118 -121662665 - RMER1C Other Other -94 1248 999 7 874 183 42 0 0 chr3 37937118 37937142 -121662641 + (TGG)n Simple_repeat Simple_repeat 3 26 0 7 874 1419 155 46 25 chr3 37937142 37937180 -121662603 - RMER1C Other Other -344 998 958 7 874 8001 39 1 2 chr3 37937193 37938140 -121661643 - L1Md_F2 LINE L1 -13 6569 5624 7 874 2013 266 96 6 chr3 37938138 37938671 -121661112 - RMER1C Other Other -372 970 390 7 874 287 310 11 0 chr3 37938653 37938740 -121661043 - RMER1C Other Other -547 795 708 7 874 265 367 0 35 chr3 37938776 37938889 -121660894 - RMER1C Other Other -1202 140 32 7 874 275 362 0 9 chr3 37938938 37939044 -121660739 - RMER1B Other Other -913 153 49 7 874 1107 201 22 30 chr3 37939019 37939250 -121660533 - RMER1C Other Other -1039 303 75 7 874 24 0 0 0 chr3 37939530 37939554 -121660229 + AT_rich Low_complexity Low_complexity 1 24 0 7 874 427 211 22 76 chr3 37939630 37939789 -121659994 - RMER17C LTR ERVK -135 275 125 7 874 414 0 0 0 chr3 37939789 37939835 -121659948 + (GA)n Simple_repeat Simple_repeat 2 47 0 7 874 427 211 22 76 chr3 37939835 37939860 -121659923 - RMER17C LTR ERVK -286 124 101 7 874 313 283 8 40 chr3 37941174 37941299 -121658484 + CT-rich Low_complexity Low_complexity 3 123 0 7 874 298 213 0 21 chr3 37941299 37941395 -121658388 + C-rich Low_complexity Low_complexity 3 96 0 7 874 306 292 56 43 chr3 37943311 37943472 -121656311 + MLT1B LTR MaLR 37 199 -191 7 874 225 280 31 171 chr3 37943846 37943975 -121655808 + MLT1B LTR MaLR 271 381 -9 7 874 759 254 29 19 chr3 37945289 37945498 -121654285 + ID_B1 SINE B4 3 213 -11 7 874 641 236 56 76 chr3 37945595 37945792 -121653991 - B3A SINE B2 -2 196 4 7 874 249 262 15 15 chr3 37946513 37946579 -121653204 + CT-rich Low_complexity Low_complexity 3 68 0 7 874 481 299 0 0 chr3 37946582 37946689 -121653094 - PB1D10 SINE Alu -10 107 1 7 874 431 245 52 9 chr3 37947174 37947314 -121652469 + B4 SINE B4 126 283 -9 7 874 457 16 32 0 chr3 37947323 37947385 -121652398 + (CA)n Simple_repeat Simple_repeat 1 64 0 7 874 386 246 30 30 chr3 37947467 37947601 -121652182 + GA-rich Low_complexity Low_complexity 3 136 0 7 874 24 53 0 0 chr3 37949838 37949876 -121649907 + AT_rich Low_complexity Low_complexity 1 38 0 7 874 1324 253 102 3 chr3 37950022 37950375 -121649408 + MTD LTR MaLR 1 388 -31 7 874 1119 213 20 0 chr3 37950398 37950595 -121649188 - B3 SINE B2 -14 202 2 7 874 327 297 26 110 chr3 37952045 37952200 -121647583 + RSINE1 SINE B4 9 150 -15 7 874 659 242 26 46 chr3 37952668 37952713 -121647070 - B3A SINE B2 -5 193 149 7 874 491 118 12 0 chr3 37952713 37952798 -121646985 + (TG)n Simple_repeat Simple_repeat 2 87 0 7 874 659 242 26 46 chr3 37952798 37952947 -121646836 - B3A SINE B2 -50 148 3 7 874 242 241 204 0 chr3 37953276 37953384 -121646399 + MER2 DNA MER2_type 22 151 -194 7 874 302 312 36 9 chr3 37954200 37954310 -121645473 + MTD LTR MaLR 1 113 -306 7 874 212 250 8 40 chr3 37955006 37955131 -121644652 + CT-rich Low_complexity Low_complexity 3 123 0 7 874 951 117 0 0 chr3 37955320 37955500 -121644283 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 7 874 1630 154 58 100 chr3 37955870 37956231 -121643552 + ORR1B1 LTR MaLR 41 386 -8 7 874 1035 144 17 0 chr3 37956235 37956255 -121643528 + ORR1B1-int LTR MaLR 1 20 -1943 7 874 267 31 0 0 chr3 37956255 37956287 -121643496 + (TG)n Simple_repeat Simple_repeat 2 33 0 7 874 1035 144 17 0 chr3 37956287 37956439 -121643344 + ORR1B1-int LTR MaLR 21 174 -1789 7 874 225 0 0 0 chr3 37956815 37956840 -121642943 + (TA)n Simple_repeat Simple_repeat 2 26 0 7 874 607 26 13 0 chr3 37956896 37956974 -121642809 + L1Md_A LINE L1 6504 6582 0 7 874 3617 245 60 76 chr3 37957568 37957603 -121642180 + MYSERV-int LTR ERVK 3775 3808 -2742 7 874 408 40 0 0 chr3 37957603 37957653 -121642130 + (TA)n Simple_repeat Simple_repeat 2 51 0 7 874 3617 245 60 76 chr3 37957653 37958812 -121640971 + MYSERV-int LTR ERVK 3809 4952 -1598 7 874 6840 42 0 0 chr3 37958812 37959582 -121640201 - L1Md_T LINE L1 0 6582 5813 7 874 3617 245 60 76 chr3 37959582 37959757 -121640026 + MYSERV-int LTR ERVK 4953 5123 -1427 7 874 481 276 43 65 chr3 37959758 37959990 -121639793 + RMER4A LTR ERVK 248 583 -2 7 874 8854 118 70 4 chr3 37959990 37961507 -121638276 + Lx3C LINE L1 5360 6976 0 7 874 5048 218 33 35 chr3 37961520 37961695 -121638088 + MYSERV-int LTR ERVK 5275 5453 -1097 7 874 3105 30 0 110 chr3 37961695 37962105 -121637678 - RLTR10B2 LTR ERVK 0 365 1 7 874 5048 218 33 35 chr3 37962105 37963204 -121636579 + MYSERV-int LTR ERVK 5454 6546 -4 7 874 684 252 46 14 chr3 37963207 37963424 -121636359 + RLTR15 LTR ERVK 1 224 -135 7 874 13410 142 14 23 chr3 37963427 37963647 -121636136 - L1_Mm LINE L1 -1002 4881 4669 7 874 2427 75 62 73 chr3 37963647 37964004 -121635779 - L1_Mus2 LINE L1 0 6566 6214 7 874 13410 142 14 23 chr3 37964004 37964931 -121634852 - L1_Mm LINE L1 -1215 4668 3752 7 874 1733 142 84 181 chr3 37964931 37965457 -121634326 + IAPLTR2_Mm LTR ERVK 1 475 0 7 874 13410 142 14 23 chr3 37965457 37966600 -121633183 - L1_Mm LINE L1 -2132 3751 2611 7 874 7654 78 24 10 chr3 37966598 37967783 -121632000 + L1_Mus4 LINE L1 5415 6627 -9 7 874 2014 221 20 28 chr3 37968130 37968571 -121631212 + MT2A LTR ERVL 1 558 -43 7 874 580 59 24 0 chr3 37968571 37968656 -121631127 + (CA)n Simple_repeat Simple_repeat 2 88 0 7 874 379 260 72 192 chr3 37968656 37968701 -121631082 + MT2A LTR ERVL 559 601 0 7 874 611 209 14 28 chr3 37968706 37968849 -121630934 - L1M2 LINE L1 -624 5688 5548 7 874 1290 231 190 81 chr3 37968988 37969472 -121630311 + MT2B LTR ERVL 1 554 -47 7 874 798 113 0 0 chr3 37969481 37969605 -121630178 + (TCTA)n Simple_repeat Simple_repeat 3 126 0 7 874 209 259 0 24 chr3 37969718 37969778 -121630005 + (TGGA)n Simple_repeat Simple_repeat 4 62 0 7 874 2041 178 69 3 chr3 37969778 37970138 -121629645 - ORR1C2 LTR MaLR 0 384 1 7 874 209 259 0 24 chr3 37970138 37970160 -121629623 + (TGGA)n Simple_repeat Simple_repeat 3 24 0 7 874 264 358 83 8 chr3 37970175 37970296 -121629487 - MLT2B2 LTR ERVL -64 498 369 7 874 654 271 81 5 chr3 37970320 37970531 -121629252 - MLT2B2 LTR ERVL -283 232 6 7 874 641 241 34 62 chr3 37971999 37972176 -121627607 - ID_B1 SINE B4 -45 179 8 7 874 318 330 136 20 chr3 37972167 37972365 -121627418 - MLT1D LTR MaLR -272 233 13 7 874 264 154 0 0 chr3 37972474 37972526 -121627257 + (TG)n Simple_repeat Simple_repeat 1 52 0 7 874 250 301 0 52 chr3 37972526 37972603 -121627180 - ID4 SINE ID -6 77 5 7 874 425 336 62 25 chr3 37973899 37974143 -121625640 + LTR81A LTR ERV1? 4 256 -1094 7 874 21 0 0 0 chr3 37976363 37976384 -121623399 + AT_rich Low_complexity Low_complexity 1 21 0 7 874 1495 280 72 15 chr3 37977728 37977777 -121622006 - RMER5 LTR ERV1 0 534 488 7 874 2488 160 34 3 chr3 37977777 37978159 -121621624 - ORR1B1 LTR MaLR 0 394 1 7 874 1495 280 72 15 chr3 37978159 37978584 -121621199 - RMER5 LTR ERV1 -47 487 33 7 874 243 47 0 0 chr3 37978691 37978734 -121621049 + L1_Mus4 LINE L1 6591 6633 -3 7 874 702 278 27 46 chr3 37979121 37979340 -121620443 - B3 SINE B2 -1 215 1 7 874 352 362 9 0 chr3 37979980 37980085 -121619698 - ID_B1 SINE B4 -83 141 36 7 874 325 262 28 0 chr3 37980340 37980417 -121619366 + B3 SINE B2 90 166 -50 7 874 441 0 0 0 chr3 37980429 37980478 -121619305 + (CA)n Simple_repeat Simple_repeat 2 50 0 7 874 583 279 35 50 chr3 37980886 37981086 -121618697 + B3A SINE B2 2 198 0 7 874 3660 74 23 6 chr3 37981104 37981582 -121618201 - RLTR44D LTR ERVK 0 486 1 7 874 1039 315 48 18 chr3 37981927 37982263 -121617520 - MTEa LTR MaLR 0 379 34 7 874 302 133 27 0 chr3 37982287 37982362 -121617421 + (TCTCTG)n Simple_repeat Simple_repeat 2 78 0 7 874 643 225 36 0 chr3 37982596 37982734 -121617049 - B3A SINE B2 -55 143 1 7 874 189 0 0 0 chr3 37983414 37983435 -121616348 + (T)n Simple_repeat Simple_repeat 1 21 0 7 874 1444 298 43 24 chr3 37984371 37984831 -121614952 + Tigger7 DNA MER2_type 1 469 -2022 7 874 2964 155 103 147 chr3 37984879 37985143 -121614640 + RMER17A2 LTR ERVK 1 241 -665 7 874 1456 176 12 0 chr3 37985143 37985393 -121614390 - Lx2 LINE L1 -1 6996 6744 7 874 2964 155 103 147 chr3 37985393 37985469 -121614314 + RMER17A2 LTR ERVK 242 247 -659 7 874 5685 157 38 8 chr3 37985469 37986422 -121613361 - Lx3A LINE L1 -6 6975 5995 7 874 2964 155 103 147 chr3 37986422 37987027 -121612756 + RMER17A2 LTR ERVK 248 906 0 7 874 21 0 0 0 chr3 37987032 37987053 -121612730 + AT_rich Low_complexity Low_complexity 1 21 0 7 874 271 318 0 56 chr3 37987093 37987183 -121612600 + Tigger7 DNA MER2_type 2402 2486 -5 7 874 420 304 0 0 chr3 37988022 37988114 -121611669 + RSINE1 SINE B4 4 95 -70 7 874 459 0 0 0 chr3 37988155 37988206 -121611577 + (CA)n Simple_repeat Simple_repeat 2 52 0 7 874 24 32 0 0 chr3 37988206 37988237 -121611546 + AT_rich Low_complexity Low_complexity 1 31 0 7 874 315 65 0 0 chr3 37988330 37988376 -121611407 + (TTTTTG)n Simple_repeat Simple_repeat 2 47 0 7 874 817 249 87 60 chr3 37989106 37989528 -121610255 - RMER15 LTR ERVL -18 557 30 7 874 1469 144 13 18 chr3 37989545 37989771 -121610012 + URR1A DNA MER1_type 2 226 0 7 874 805 304 48 98 chr3 37989900 37990298 -121609485 + MTE2a LTR MaLR 1 378 -1 7 874 878 295 56 32 chr3 37991275 37991527 -121608256 + B4A SINE B4 35 292 0 7 874 24 0 0 0 chr3 37991643 37991667 -121608116 + AT_rich Low_complexity Low_complexity 1 24 0 7 874 35324 74 5 2 chr3 37994327 38000000 -121599783 - L1Md_F2 LINE L1 -12 6570 879 7 874 1584 95 126 0 chr3 38000004 38000235 -121599548 - L1Md_F LINE L1 -5766 753 494 1 874 687 169 8 0 chr3 38000410 38000528 -121599255 + B1_Mus2 SINE Alu 29 147 0 2 874 241 286 38 25 chr3 38000838 38000917 -121598866 + MER58B DNA MER1_type 226 305 -36 3 874 844 204 104 5 chr3 38001179 38001391 -121598392 - Lx8 LINE L1 -192 7281 7049 4 874 1128 285 49 6 chr3 38002819 38003147 -121596636 + Lx8 LINE L1 6433 6774 -699 5 874 315 338 41 37 chr3 38003346 38003564 -121596219 - RMER15 LTR ERVL -4 571 353 6 874 380 299 26 39 chr3 38004201 38004354 -121595429 + RSINE1 SINE B4 15 165 0 7 874 22 0 0 0 chr3 38004363 38004385 -121595398 + AT_rich Low_complexity Low_complexity 1 22 0 8 874 234 0 0 0 chr3 38005546 38005572 -121594211 + (CA)n Simple_repeat Simple_repeat 2 27 0 9 874 1341 183 90 155 chr3 38007927 38008425 -121591358 + RMER4A LTR ERVK 1 466 0 1 874 227 232 35 47 chr3 38008440 38008526 -121591257 - MER77 LTR ERVL -20 587 503 1 874 3967 128 135 34 chr3 38008607 38009353 -121590430 - RLTR13B2 LTR ERVK 0 822 1 1 874 218 227 0 0 chr3 38009790 38009834 -121589949 + (TA)n Simple_repeat Simple_repeat 1 44 0 1 109 809 299 62 14 chr3 38010805 38011080 -121588703 + B4A SINE B4 1 288 -4 1 875 1224 257 29 0 chr3 38012110 38012386 -121587397 - Lx5 LINE L1 -11 7039 6756 1 875 708 250 0 0 chr3 38012401 38012533 -121587250 + B1_Mm SINE Alu 7 138 -9 1 875 284 267 26 20 chr3 38012598 38012751 -121587032 - L1M5 LINE L1 -3199 2947 2794 1 875 276 279 22 44 chr3 38014075 38014165 -121585618 - B4A SINE B4 -204 88 1 1 875 437 34 0 0 chr3 38015649 38015708 -121584075 + L1_Mus1 LINE L1 6509 6567 0 1 875 711 271 56 50 chr3 38016392 38016695 -121583088 + MTE2a LTR MaLR 75 379 0 2 875 256 336 103 8 chr3 38017388 38017514 -121582269 - B1F SINE Alu -9 140 3 2 875 420 225 0 22 chr3 38017679 38017770 -121582013 - PB1D9 SINE Alu -30 90 2 2 875 41685 10 1 6 chr3 38017927 38024539 -121575244 - L1Md_A LINE L1 0 6582 7 2 875 1943 174 6 0 chr3 38024741 38025081 -121574702 + Lx6 LINE L1 3403 3744 -2136 2 875 5070 227 72 66 chr3 38025079 38026812 -121572971 + Lx6 LINE L1 5344 7140 -320 2 875 231 36 0 0 chr3 38026851 38026879 -121572904 + (TG)n Simple_repeat Simple_repeat 2 29 0 2 875 631 206 106 0 chr3 38026903 38027044 -121572739 - B3A SINE B2 -42 156 1 2 875 280 328 50 25 chr3 38027775 38027894 -121571889 + MIR SINE MIR 21 142 -66 2 875 248 235 0 0 chr3 38027905 38027956 -121571827 + RSINE1 SINE B4 3 53 -112 2 875 625 299 72 8 chr3 38028131 38028367 -121571416 - ORR1E LTR MaLR -108 251 1 2 875 24 0 0 0 chr3 38028923 38028947 -121570836 + AT_rich Low_complexity Low_complexity 1 24 0 3 875 313 269 211 0 chr3 38032310 38032414 -121567369 - ID_B1 SINE B4 -7 217 92 3 875 1089 95 0 0 chr3 38032559 38032790 -121566993 + (CA)n Simple_repeat Simple_repeat 1 231 0 3 875 249 339 27 0 chr3 38033018 38033130 -121566653 + L1_Rod LINE L1 2129 2243 -3604 3 875 690 288 6 22 chr3 38033963 38034144 -121565639 - B4 SINE B4 -4 288 111 3 875 236 203 0 72 chr3 38034921 38034990 -121564793 - MurSatRep1 Unknown Unknown -1363 774 711 3 875 566 14 14 0 chr3 38035368 38035439 -121564344 + (TATG)n Simple_repeat Simple_repeat 2 73 0 3 875 268 250 36 48 chr3 38035828 38035912 -121563871 + MIRb SINE MIR 87 169 -99 3 875 426 248 0 19 chr3 38035988 38036095 -121563688 + B3 SINE B2 26 130 -86 3 875 975 243 201 3 chr3 38039211 38039500 -121560283 - MTD LTR MaLR 0 419 74 3 875 804 304 97 0 chr3 38039668 38039915 -121559868 + B4 SINE B4 13 283 -9 4 875 1995 92 33 0 chr3 38040146 38040417 -121559366 - L1_Mm LINE L1 -1219 4664 4385 4 875 6071 68 11 0 chr3 38040417 38041197 -121558586 + L1_Mus1 LINE L1 5777 6565 -2 4 875 717 333 82 45 chr3 38043491 38043846 -121555937 - MTE2a LTR MaLR -2 377 10 4 875 685 272 72 0 chr3 38045396 38045591 -121554192 + ID_B1 SINE B4 16 224 0 4 875 246 241 132 49 chr3 38046012 38046156 -121553627 + RMER2 LTR ERV1 385 540 -27 4 875 425 250 72 8 chr3 38047349 38047474 -121552309 + MTEb LTR MaLR 65 197 -182 4 875 291 335 51 9 chr3 38047938 38048155 -121551628 + L1M5 LINE L1 5105 5330 -816 4 875 359 271 113 0 chr3 38049828 38049961 -121549822 + B3A SINE B2 2 149 -49 4 875 383 92 15 0 chr3 38049964 38050029 -121549754 + (CA)n Simple_repeat Simple_repeat 1 66 0 4 875 21 82 0 0 chr3 38050029 38050078 -121549705 + AT_rich Low_complexity Low_complexity 1 49 0 5 875 254 346 63 63 chr3 38050090 38050232 -121549551 + B1F1 SINE Alu 1 142 -7 5 875 247 179 15 15 chr3 38050615 38050683 -121549100 + (CA)n Simple_repeat Simple_repeat 1 68 0 5 875 305 301 11 11 chr3 38051882 38051976 -121547807 - B3A SINE B2 -104 94 1 5 875 584 240 35 114 chr3 38053026 38053228 -121546555 - B3A SINE B2 -12 186 1 5 875 275 0 29 0 chr3 38053266 38053301 -121546482 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 5 875 305 290 18 66 chr3 38054750 38054916 -121544867 + L1M4 LINE L1 910 1067 -5475 5 875 589 272 29 6 chr3 38054936 38054963 -121544820 - B3A SINE B2 -20 178 152 5 875 450 36 0 0 chr3 38054963 38055019 -121544764 + (TG)n Simple_repeat Simple_repeat 2 57 0 5 875 589 272 29 6 chr3 38055019 38055165 -121544618 - B3A SINE B2 -47 151 1 5 875 299 318 48 31 chr3 38055166 38055393 -121544390 + L1M4 LINE L1 1040 1270 -5272 5 875 377 304 19 68 chr3 38055393 38055568 -121544215 + MTEb LTR MaLR 1 144 -235 5 875 3846 101 21 22 chr3 38055568 38056148 -121543635 - L1_Mm LINE L1 -357 5526 4948 6 875 2062 79 25 0 chr3 38056148 38056425 -121543358 + L1_Mus1 LINE L1 6282 6565 -2 6 875 455 263 29 0 chr3 38056436 38056573 -121543210 + MTEb LTR MaLR 123 263 -116 5 875 816 251 32 8 chr3 38057994 38058198 -121541585 + ID_B1 SINE B4 12 211 -13 6 875 180 0 0 0 chr3 38058212 38058232 -121541551 + (TAAA)n Simple_repeat Simple_repeat 3 22 0 6 875 9370 55 3 0 chr3 38058281 38059429 -121540354 + L1Md_F2 LINE L1 4435 5586 -297 6 875 7626 59 16 25 chr3 38059429 38060432 -121539351 + L1Md_F2 LINE L1 5587 6580 -2 6 875 538 355 30 0 chr3 38062367 38062570 -121537213 - MIR SINE MIR -46 216 8 6 875 436 301 2 48 chr3 38062787 38062932 -121536851 + B3A SINE B2 66 203 -13 6 875 183 204 0 0 chr3 38062936 38062980 -121536803 + (CA)n Simple_repeat Simple_repeat 1 44 0 6 875 6909 92 6 2 chr3 38063686 38064651 -121535132 - L1_Mm LINE L1 -1093 4790 3822 6 875 7659 67 7 2 chr3 38064651 38065783 -121534000 + L1_Mus2 LINE L1 5428 6565 -1 6 875 374 0 22 0 chr3 38066475 38066521 -121533262 + (TTTA)n Simple_repeat Simple_repeat 1 47 0 7 875 508 309 29 0 chr3 38066545 38066681 -121533102 - RSINE1 SINE B4 -22 143 4 7 875 9538 37 2 1 chr3 38066681 38068536 -121531247 - L1Md_F3 LINE L1 -16 6568 4713 7 875 2870 55 0 0 chr3 38069025 38069371 -121530412 + ORR1A0 LTR MaLR 1 346 0 7 875 814 330 92 16 chr3 38070458 38070948 -121528835 - MT2A LTR ERVL 0 533 7 7 875 207 100 0 0 chr3 38071650 38071680 -121528103 + (TTCTCC)n Simple_repeat Simple_repeat 5 34 0 7 875 857 80 32 0 chr3 38071685 38071810 -121527973 - B1_Mus1 SINE Alu -2 146 18 7 875 358 273 10 0 chr3 38072162 38072261 -121527522 - B4 SINE B4 -11 281 182 7 875 242 256 25 25 chr3 38073511 38073591 -121526192 + ID4_ SINE ID 1 80 -3 7 875 711 0 0 0 chr3 38074423 38074502 -121525281 + (GAAA)n Simple_repeat Simple_repeat 2 80 0 7 875 246 208 156 0 chr3 38075725 38075802 -121523981 - PB1D9 SINE Alu -9 111 23 8 875 1022 82 7 0 chr3 38075870 38076016 -121523767 - B1_Mm SINE Alu 0 147 1 8 875 276 262 8 0 chr3 38075910 38076036 -121523747 - ORR1B1-int LTR MaLR -755 754 628 8 875 25 51 0 0 chr3 38076354 38076393 -121523390 + AT_rich Low_complexity Low_complexity 1 39 0 8 875 243 0 0 0 chr3 38076732 38076759 -121523024 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 8 875 6866 194 31 9 chr3 38076766 38078092 -121521691 - Lx5 LINE L1 -3 7047 5693 8 875 5314 201 163 72 chr3 38078082 38079181 -121520602 - L1_Mur2 LINE L1 -612 2928 1715 8 875 495 0 0 0 chr3 38079181 38079236 -121520547 + (TG)n Simple_repeat Simple_repeat 2 56 0 8 875 5314 228 121 68 chr3 38079236 38080621 -121519162 - L1_Mur2 LINE L1 -1826 1714 209 8 875 662 291 18 0 chr3 38080659 38080824 -121518959 - B3A SINE B2 -30 168 1 8 875 1519 121 9 0 chr3 38080879 38081103 -121518680 - L1_Mus3 LINE L1 -466 6172 5947 8 875 2940 88 12 26 chr3 38081103 38081533 -121518250 + L1_Mus3 LINE L1 6215 6638 0 8 875 368 336 61 48 chr3 38082166 38082313 -121517470 + RSINE1 SINE B4 2 150 -15 9 875 666 37 0 0 chr3 38082332 38082413 -121517370 + (TC)n Simple_repeat Simple_repeat 1 81 0 9 875 261 0 0 0 chr3 38082431 38082460 -121517323 + (CA)n Simple_repeat Simple_repeat 1 29 0 9 875 267 203 0 0 chr3 38082462 38082521 -121517262 + (TCG)n Simple_repeat Simple_repeat 2 60 0 9 875 360 0 0 0 chr3 38083641 38083681 -121516102 + (CA)n Simple_repeat Simple_repeat 2 41 0 9 875 718 267 11 0 chr3 38085045 38085221 -121514562 + B3A SINE B2 3 180 -18 9 875 396 0 0 0 chr3 38085256 38085300 -121514483 + (CAAAC)n Simple_repeat Simple_repeat 2 45 0 9 875 253 279 96 44 chr3 38085798 38085933 -121513850 + L1M3b LINE L1 210 351 -5930 9 875 340 217 138 28 chr3 38086872 38086981 -121512802 - B3A SINE B2 -77 121 1 9 875 3579 20 2 0 chr3 38087186 38087581 -121512202 - MTA_Mm LTR MaLR 0 396 1 9 875 829 263 198 26 chr3 38089085 38089410 -121510373 + RLTR40 LTR ERVK 307 661 -156 1 875 186 43 0 0 chr3 38089410 38089433 -121510350 + (GAGAA)n Simple_repeat Simple_repeat 5 27 0 1 875 829 263 198 26 chr3 38089433 38089532 -121510251 + RLTR40 LTR ERVK 662 803 -14 1 875 237 183 48 9 chr3 38089901 38090006 -121509777 + (TAGA)n Simple_repeat Simple_repeat 1 109 0 1 875 1327 70 0 14 chr3 38090007 38090372 -121509411 + (GGAA)n Simple_repeat Simple_repeat 1 359 0 1 875 969 119 0 22 chr3 38091055 38091236 -121508547 + (GAA)n Simple_repeat Simple_repeat 2 178 0 1 875 762 244 117 0 chr3 38091284 38091497 -121508286 + L1MC1 LINE L1 6096 6333 0 1 875 405 39 0 0 chr3 38094175 38094226 -121505557 + (TG)n Simple_repeat Simple_repeat 2 52 0 1 875 686 314 66 13 chr3 38094237 38094463 -121505320 - B4 SINE B4 -18 274 37 1 875 224 289 19 0 chr3 38095563 38095615 -121504168 + B4A SINE B4 1 53 -239 1 875 233 274 117 45 chr3 38095680 38095791 -121503992 + B4A SINE B4 168 286 -6 1 875 491 241 26 8 chr3 38095975 38096092 -121503691 + PB1D7 SINE Alu 1 119 -1 1 875 1642 244 141 26 chr3 38096306 38096422 -121503361 - Lx6 LINE L1 0 7460 7352 1 875 1657 42 0 0 chr3 38096422 38096615 -121503168 - B2_Mm1a SINE B2 0 193 1 1 875 1642 244 141 26 chr3 38096615 38096667 -121503116 - Lx6 LINE L1 -109 7351 7288 1 875 603 0 0 0 chr3 38096667 38096734 -121503049 + (TATAA)n Simple_repeat Simple_repeat 2 68 0 1 875 1642 225 259 19 chr3 38096734 38097088 -121502695 - Lx6 LINE L1 -173 7287 6859 1 875 295 266 221 15 chr3 38097154 38097417 -121502366 + L1ME2 LINE L1 3769 4085 -2061 1 875 393 286 38 44 chr3 38098031 38098214 -121501569 - MER20 DNA MER1_type -7 212 31 1 875 2232 87 10 6 chr3 38098528 38098840 -121500943 + L1Md_F2 LINE L1 6267 6579 -3 1 875 225 280 122 0 chr3 38099208 38099315 -121500468 + L1ME2 LINE L1 5433 5552 -610 1 875 1422 0 0 0 chr3 38099332 38099490 -121500293 + (CAAAG)n Simple_repeat Simple_repeat 1 158 0 1 875 291 71 0 0 chr3 38099753 38099795 -121499988 + (TG)n Simple_repeat Simple_repeat 2 43 0 1 875 250 316 118 15 chr3 38099899 38100034 -121499749 + L1ME2 LINE L1 6006 6154 -10 1 875 461 322 80 22 chr3 38100089 38100365 -121499418 + B4A SINE B4 1 292 0 1 875 381 151 0 0 chr3 38100369 38100455 -121499328 + (CA)n Simple_repeat Simple_repeat 1 86 0 1 875 222 91 0 0 chr3 38100454 38100487 -121499296 + (GA)n Simple_repeat Simple_repeat 2 34 0 1 875 779 133 0 22 chr3 38100499 38100683 -121499100 + (CA)n Simple_repeat Simple_repeat 1 180 0 1 875 290 26 26 0 chr3 38100727 38100766 -121499017 + (CA)n Simple_repeat Simple_repeat 2 41 0 1 875 308 280 54 36 chr3 38100806 38100917 -121498866 + PB1D10 SINE Alu 5 117 0 1 875 495 309 7 42 chr3 38101880 38102022 -121497761 + RSINE1 SINE B4 10 146 -19 1 875 307 329 55 31 chr3 38102536 38102699 -121497084 - RMER30 DNA MER1_type -3 199 33 1 875 291 333 171 0 chr3 38104198 38104315 -121495468 + RSINE1 SINE B4 8 144 -21 1 875 828 270 132 21 chr3 38104584 38104963 -121494820 - MER54A LTR ERVL -7 894 474 1 875 342 0 0 0 chr3 38105733 38105771 -121494012 + (TTA)n Simple_repeat Simple_repeat 2 39 0 1 875 1304 221 8 0 chr3 38105771 38106025 -121493758 - Lx6 LINE L1 -18 7442 7187 1 875 323 282 163 49 chr3 38106522 38106768 -121493015 + L1M2 LINE L1 2120 2393 -3750 1 875 278 277 25 59 chr3 38107858 38107977 -121491806 - PB1 SINE Alu 0 127 13 1 875 261 0 0 0 chr3 38108004 38108033 -121491750 + (TTA)n Simple_repeat Simple_repeat 2 30 0 1 875 975 292 86 15 chr3 38109084 38109421 -121490362 + MTE2b LTR MaLR 4 364 -15 1 875 37073 50 1 23 chr3 38109661 38116334 -121483449 - L1Md_T LINE L1 0 6582 104 1 875 4503 51 18 7 chr3 38116699 38117270 -121482513 - L1Md_F2 LINE L1 -1 6581 6005 1 875 3544 39 0 0 chr3 38117270 38117686 -121482097 - L1Md_T LINE L1 0 6582 6167 1 875 346 363 22 62 chr3 38117713 38117892 -121481891 + B4A SINE B4 1 172 -120 1 875 428 241 18 9 chr3 38118334 38118443 -121481340 - RSINE1 SINE B4 -27 138 29 1 875 453 351 58 7 chr3 38118966 38119121 -121480662 + RSINE1 SINE B4 1 163 -2 1 875 445 321 50 15 chr3 38120845 38121044 -121478739 + B4 SINE B4 29 234 -58 1 875 934 175 62 0 chr3 38121049 38121243 -121478540 - URR1B DNA MER1_type -13 212 7 1 875 516 16 0 0 chr3 38121263 38121324 -121478459 + (CA)n Simple_repeat Simple_repeat 1 61 0 1 875 486 0 0 0 chr3 38121543 38121597 -121478186 + (TG)n Simple_repeat Simple_repeat 2 55 0 1 875 4480 120 12 1 chr3 38121674 38122335 -121477448 + L1_Mm LINE L1 5177 5844 -39 1 875 903 142 0 39 chr3 38122741 38122895 -121476888 + B1_Mur4 SINE Alu 2 149 -1 1 875 1182 99 0 0 chr3 38123045 38123216 -121476567 + (GAGAA)n Simple_repeat Simple_repeat 4 174 0 1 875 5460 114 30 1 chr3 38123217 38124010 -121475773 + Lx LINE L1 5836 6651 -3 1 875 477 78 13 0 chr3 38124144 38124221 -121475562 + L1_Mus3 LINE L1 6561 6638 0 1 875 540 0 0 0 chr3 38124460 38124520 -121475263 + (TC)n Simple_repeat Simple_repeat 2 61 0 1 875 459 0 0 0 chr3 38124520 38124570 -121475213 + (TG)n Simple_repeat Simple_repeat 2 52 0 1 875 516 264 48 61 chr3 38124580 38124745 -121475038 - B3A SINE B2 -29 169 7 1 875 583 251 167 16 chr3 38124738 38124924 -121474859 - B4A SINE B4 -60 232 19 1 875 573 304 52 5 chr3 38125185 38125377 -121474406 - ID_B1 SINE B4 -4 220 20 1 875 488 275 81 0 chr3 38127120 38127241 -121472542 + B3 SINE B2 29 153 -63 1 875 324 70 0 0 chr3 38127241 38127284 -121472499 + (CACG)n Simple_repeat Simple_repeat 2 44 0 1 875 488 275 81 0 chr3 38127284 38127311 -121472472 + B3 SINE B2 154 188 -28 1 875 652 281 51 5 chr3 38127439 38127636 -121472147 + B4 SINE B4 1 206 -86 1 875 240 365 0 0 chr3 38127636 38127732 -121472051 + (CA)n Simple_repeat Simple_repeat 2 97 0 1 875 22 0 0 0 chr3 38127783 38127805 -121471978 + AT_rich Low_complexity Low_complexity 1 22 0 1 875 289 365 15 70 chr3 38128066 38128325 -121471458 - L1M5 LINE L1 -381 5783 5539 1 875 301 316 60 0 chr3 38128488 38128621 -121471162 - Tigger5 DNA MER2_type -55 2351 2211 1 875 29 0 0 0 chr3 38129291 38129320 -121470463 + GC_rich Low_complexity Low_complexity 1 29 0 1 875 278 200 106 39 chr3 38129972 38130076 -121469707 - ORR1E LTR MaLR -209 150 40 1 875 243 0 0 0 chr3 38130458 38130485 -121469298 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 875 449 283 35 0 chr3 38130686 38130799 -121468984 + ID_B1 SINE B4 5 121 -103 1 875 616 174 13 0 chr3 38132392 38132547 -121467236 + (TG)n Simple_repeat Simple_repeat 2 158 0 1 875 354 23 0 0 chr3 38133181 38133224 -121466559 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 875 913 286 20 51 chr3 38133867 38133883 -121465900 - B4 SINE B4 -2 290 275 1 875 879 10 0 0 chr3 38133883 38133983 -121465800 + (GA)n Simple_repeat Simple_repeat 2 101 0 1 875 913 286 20 51 chr3 38133983 38134261 -121465522 - B4 SINE B4 -18 274 5 1 875 241 280 0 13 chr3 38135647 38135723 -121464060 + (TA)n Simple_repeat Simple_repeat 1 75 0 1 875 259 310 132 26 chr3 38135760 38136025 -121463758 + Charlie5 DNA MER1_type 7 299 -2325 1 875 549 272 8 0 chr3 38136471 38136596 -121463187 - B3A SINE B2 -72 126 1 1 875 227 208 38 25 chr3 38136634 38136713 -121463070 + GA-rich Low_complexity Low_complexity 4 83 0 1 875 1111 179 38 8 chr3 38137211 38137518 -121462265 + L1_Mur2 LINE L1 896 1277 -4609 1 875 4413 40 42 0 chr3 38138470 38138998 -121460785 + L1Md_T LINE L1 6033 6582 0 1 875 10203 157 33 28 chr3 38139250 38141083 -121458700 + L1_Mur2 LINE L1 1261 3129 -2748 1 875 1300 14 0 0 chr3 38141083 38141230 -121458553 + B1_Mus2 SINE Alu 1 147 0 1 875 10203 157 33 28 chr3 38141230 38141254 -121458529 + L1_Mur2 LINE L1 3130 3130 -2747 1 875 207 0 0 0 chr3 38141254 38141277 -121458506 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 1 875 10203 157 33 28 chr3 38141277 38141414 -121458369 + L1_Mur2 LINE L1 3130 3267 -2610 1 109 4099 154 112 65 chr3 38141416 38142393 -121457390 - RLTR13D2 LTR ERVK -1 1022 1 1 876 8458 148 21 75 chr3 38142393 38143221 -121456562 + L1_Mur2 LINE L1 3261 4098 -1779 1 876 1100 97 7 0 chr3 38143221 38143366 -121456417 - B1_Mus1 SINE Alu -1 147 2 1 876 1059 81 124 6 chr3 38143366 38143527 -121456256 - B2_Mm2 SINE B2 -14 181 2 1 876 8458 148 21 75 chr3 38143527 38144406 -121455377 + L1_Mur2 LINE L1 4099 4875 -1002 1 876 3100 182 53 29 chr3 38144400 38145018 -121454765 + Lx5 LINE L1 6372 7004 -46 1 876 195 42 0 0 chr3 38145038 38145062 -121454721 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 1 876 609 244 0 41 chr3 38146269 38146444 -121453339 + B3A SINE B2 1 164 -52 1 876 378 0 0 0 chr3 38146444 38146486 -121453297 + (TC)n Simple_repeat Simple_repeat 2 43 0 1 876 224 0 65 0 chr3 38148414 38148445 -121451338 + (CAAA)n Simple_repeat Simple_repeat 4 36 0 1 876 504 257 22 0 chr3 38148498 38148634 -121451149 - RSINE1 SINE B4 -24 141 3 1 876 2797 116 11 38 chr3 38148695 38149169 -121450614 - MT2C_Mm LTR ERVL -14 461 1 1 876 245 237 132 0 chr3 38149776 38149852 -121449931 + MTE2a LTR MaLR 149 234 -145 1 876 703 237 56 56 chr3 38150337 38150587 -121449196 - RLTR42-int LTR ERVK -4126 1396 1147 1 876 316 104 0 0 chr3 38151169 38151180 -121448603 - HAL1-3A_ME LINE L1 -835 2023 2013 1 876 515 95 21 0 chr3 38151180 38151275 -121448508 + (TCTCTG)n Simple_repeat Simple_repeat 6 102 0 1 876 316 104 0 0 chr3 38151275 38151311 -121448472 - HAL1-3A_ME LINE L1 -846 2012 1977 1 876 1870 216 10 20 chr3 38151312 38151719 -121448064 + MTD LTR MaLR 16 418 -1 1 876 258 32 0 0 chr3 38152272 38152303 -121447480 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1 876 506 288 23 0 chr3 38152315 38152447 -121447336 - RSINE1 SINE B4 -22 143 9 1 876 478 67 13 13 chr3 38153267 38153343 -121446440 + (GAAAA)n Simple_repeat Simple_repeat 4 79 0 1 876 196 176 0 50 chr3 38153778 38153838 -121445945 + GA-rich Low_complexity Low_complexity 3 59 0 1 876 394 315 282 17 chr3 38153951 38154249 -121445534 + L1MB5 LINE L1 5536 5912 -262 1 876 230 132 17 86 chr3 38154394 38154452 -121445331 - SYNREP_MM Satellite Satellite -211 55 2 1 876 211 250 18 0 chr3 38154474 38154530 -121445253 + ID4_ SINE ID 8 64 -19 1 876 23 0 0 0 chr3 38155488 38155511 -121444272 + AT_rich Low_complexity Low_complexity 1 23 0 1 876 473 301 120 13 chr3 38156182 38156453 -121443330 - ORR1E LTR MaLR -12 367 27 1 876 189 0 0 0 chr3 38157453 38157474 -121442309 + (CA)n Simple_repeat Simple_repeat 2 22 0 2 876 340 55 18 18 chr3 38157474 38157530 -121442253 + (CCA)n Simple_repeat Simple_repeat 1 56 0 2 876 291 319 79 21 chr3 38157590 38157779 -121442004 + MLT1D LTR MaLR 247 446 -59 2 876 367 52 17 17 chr3 38158071 38158130 -121441653 + (TGG)n Simple_repeat Simple_repeat 1 59 0 2 876 235 113 0 75 chr3 38158702 38158769 -121441014 + (CAAA)n Simple_repeat Simple_repeat 3 64 0 2 876 686 232 57 36 chr3 38158770 38158962 -121440821 - ID_B1 SINE B4 -15 209 14 2 876 714 253 5 45 chr3 38159000 38159199 -121440584 - B3A SINE B2 -1 197 7 2 876 2021 231 37 48 chr3 38159414 38159868 -121439915 + Lx5 LINE L1 6587 7035 -15 2 876 328 257 27 18 chr3 38159956 38160067 -121439716 + B3 SINE B2 105 216 0 2 876 318 256 0 13 chr3 38160204 38160283 -121439500 - B3A SINE B2 -77 121 44 2 876 228 240 0 0 chr3 38160533 38160583 -121439200 + (TGAA)n Simple_repeat Simple_repeat 1 50 0 2 876 555 214 177 11 chr3 38161255 38161430 -121438353 - B4 SINE B4 -36 256 53 2 876 199 324 0 0 chr3 38163818 38163889 -121435894 + MER5A DNA MER1_type 2 72 -117 2 876 1087 278 128 42 chr3 38163949 38164429 -121435354 - MTE-int LTR MaLR -303 1277 882 2 876 365 265 196 7 chr3 38164771 38164919 -121434864 - RMER15 LTR ERVL -43 532 357 2 876 318 233 54 77 chr3 38165023 38165153 -121434630 - RMER15 LTR ERVL -448 127 1 2 876 604 202 52 57 chr3 38165857 38166051 -121433732 + B3A SINE B2 5 197 -1 2 876 237 191 0 0 chr3 38166532 38166566 -121433217 + T-rich Low_complexity Low_complexity 35 68 0 2 876 942 109 58 0 chr3 38166566 38166704 -121433079 - B1_Mus1 SINE Alu 0 148 3 2 876 237 191 0 0 chr3 38166704 38166737 -121433046 + T-rich Low_complexity Low_complexity 2 34 0 2 876 268 138 86 71 chr3 38166745 38166815 -121432968 + RLTR25B LTR ERVK 439 509 -519 2 876 737 29 0 47 chr3 38166756 38166863 -121432920 + B1_Mus2 SINE Alu 46 147 0 2 876 928 49 0 0 chr3 38166884 38167006 -121432777 - B1_Mm SINE Alu -24 123 2 2 876 240 233 13 76 chr3 38167098 38167177 -121432606 - PB1D10 SINE Alu -4 113 40 2 876 464 177 31 10 chr3 38167342 38167439 -121432344 - PB1D9 SINE Alu 0 120 22 2 876 876 91 7 14 chr3 38168769 38168889 -121430894 + (GAA)n Simple_repeat Simple_repeat 3 122 0 2 876 1046 140 6 0 chr3 38168889 38169068 -121430715 + (GGA)n Simple_repeat Simple_repeat 1 180 0 2 876 876 91 7 14 chr3 38169068 38169092 -121430691 + (GAA)n Simple_repeat Simple_repeat 3 25 0 2 876 1880 192 74 10 chr3 38170820 38171214 -121428569 - MTD LTR MaLR 0 419 1 2 876 813 266 143 24 chr3 38172660 38172995 -121426788 - MTE2b LTR MaLR -4 375 1 2 876 4453 62 9 0 chr3 38173051 38173596 -121426187 - L1Md_F2 LINE L1 -12 6570 6021 2 876 221 296 0 0 chr3 38174585 38174639 -121425144 + CT-rich Low_complexity Low_complexity 3 56 0 2 876 915 233 19 5 chr3 38175399 38175606 -121424177 - B3 SINE B2 0 216 7 2 876 391 315 141 17 chr3 38176552 38176907 -121422876 - L2 LINE L2 -377 3042 2644 2 876 313 232 46 58 chr3 38177432 38177519 -121422264 + MIRc SINE MIR 130 215 -53 2 876 1770 190 105 3 chr3 38177606 38177986 -121421797 - MTD LTR MaLR 0 419 1 2 876 398 311 42 42 chr3 38178331 38178499 -121421284 + B3 SINE B2 49 216 0 2 876 235 385 0 0 chr3 38178524 38178607 -121421176 + ID4_ SINE ID 1 83 0 2 876 21 0 0 0 chr3 38178678 38178699 -121421084 + AT_rich Low_complexity Low_complexity 1 21 0 2 876 1104 88 0 26 chr3 38178699 38178835 -121420948 + B1_Mus1 SINE Alu 2 137 -11 2 876 189 0 0 0 chr3 38178835 38178856 -121420927 + (CAAAA)n Simple_repeat Simple_repeat 3 23 0 2 876 1104 88 0 26 chr3 38178856 38178870 -121420913 + B1_Mus1 SINE Alu 138 148 0 2 876 361 247 7 26 chr3 38180292 38180446 -121419337 + GA-rich Low_complexity Low_complexity 1 151 0 2 876 586 176 21 64 chr3 38181055 38181195 -121418588 - ID_B1 SINE B4 0 224 91 2 876 199 306 0 0 chr3 38182843 38182915 -121416868 + MIR SINE MIR 104 175 -87 2 876 406 309 126 16 chr3 38182984 38183175 -121416608 - MLT1C LTR MaLR -5 462 251 2 876 437 276 0 9 chr3 38183536 38183642 -121416141 + ID_B1 SINE B4 118 222 -2 2 876 1877 94 38 38 chr3 38183738 38184057 -121415726 - ORR1A2 LTR MaLR -8 319 1 2 876 369 109 0 0 chr3 38184139 38184194 -121415589 + (TG)n Simple_repeat Simple_repeat 1 55 0 2 876 234 0 0 0 chr3 38184302 38184328 -121415455 + (TAA)n Simple_repeat Simple_repeat 2 27 0 2 876 331 294 132 114 chr3 38184460 38184960 -121414823 - L1M2 LINE L1 -512 5785 5277 2 876 1558 279 196 36 chr3 38184965 38185746 -121414037 - Lx8 LINE L1 -9 7464 6559 2 876 673 245 68 0 chr3 38187481 38187673 -121412110 + ID_B1 SINE B4 1 205 -19 2 876 209 0 97 0 chr3 38187805 38187836 -121411947 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 2 876 243 0 0 0 chr3 38188358 38188385 -121411398 + (A)n Simple_repeat Simple_repeat 1 27 0 2 876 315 71 0 0 chr3 38188471 38188513 -121411270 + (TG)n Simple_repeat Simple_repeat 2 43 0 2 876 379 258 0 19 chr3 38188580 38188742 -121411041 + (CATA)n Simple_repeat Simple_repeat 4 162 0 2 876 273 196 0 0 chr3 38189172 38189223 -121410560 + ORR1B2 LTR MaLR 1 51 -316 2 876 252 313 36 0 chr3 38189582 38189665 -121410118 - RMER4B LTR ERVK -155 430 345 2 876 3189 327 77 46 chr3 38189670 38191677 -121408106 - RodERV21-int LTR ERV1 -163 4828 2760 2 876 284 286 45 45 chr3 38192589 38192721 -121407062 - MER34-int LTR ERV1 -3372 4835 4704 2 876 207 0 0 0 chr3 38192724 38192747 -121407036 + (TAA)n Simple_repeat Simple_repeat 2 24 0 2 876 1704 224 41 52 chr3 38192784 38193340 -121406443 - RLTR31A_Mm LTR ERVK -29 555 6 2 876 189 74 0 0 chr3 38194692 38194719 -121405064 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2 876 278 274 73 36 chr3 38194829 38194939 -121404844 - RMER20B LTR ERVK -10 617 504 2 876 784 252 128 86 chr3 38194985 38195475 -121404308 - RMER20B LTR ERVK -15 612 30 2 876 7371 227 47 70 chr3 38195533 38196802 -121402981 - RodERV21-int LTR ERV1 -2273 2718 1446 2 876 459 0 0 0 chr3 38196802 38196853 -121402930 + (TC)n Simple_repeat Simple_repeat 2 52 0 2 876 483 60 0 0 chr3 38196853 38196919 -121402864 + (TG)n Simple_repeat Simple_repeat 2 68 0 2 876 7371 227 47 70 chr3 38196919 38197033 -121402750 - RodERV21-int LTR ERV1 -3546 1445 1354 2 876 342 0 0 0 chr3 38197033 38197071 -121402712 + (TG)n Simple_repeat Simple_repeat 1 38 0 2 876 576 0 0 0 chr3 38197071 38197134 -121402649 + (GA)n Simple_repeat Simple_repeat 1 64 0 2 876 7371 227 47 70 chr3 38197134 38197432 -121402351 - RodERV21-int LTR ERV1 -3638 1353 1083 2 876 717 12 0 0 chr3 38197432 38197514 -121402269 + (TGG)n Simple_repeat Simple_repeat 3 84 0 2 876 7371 227 47 70 chr3 38197514 38197848 -121401935 - RodERV21-int LTR ERV1 -3909 1082 749 2 876 447 122 36 12 chr3 38197848 38197931 -121401852 + ORR1B1 LTR MaLR 310 394 0 2 876 499 202 4 41 chr3 38199777 38200021 -121399762 + (TG)n Simple_repeat Simple_repeat 1 234 0 2 876 651 106 0 113 chr3 38200190 38200393 -121399390 + (TA)n Simple_repeat Simple_repeat 1 180 0 2 876 468 0 0 0 chr3 38200412 38200464 -121399319 + (TG)n Simple_repeat Simple_repeat 1 52 0 2 876 658 323 73 66 chr3 38200526 38200814 -121398969 + B4A SINE B4 3 292 0 2 876 1824 186 125 11 chr3 38200932 38201308 -121398475 - MTD LTR MaLR 0 419 1 2 876 610 284 7 0 chr3 38201432 38201580 -121398203 + RSINE1 SINE B4 1 149 -16 2 876 239 79 0 26 chr3 38201589 38201628 -121398155 + (CAAA)n Simple_repeat Simple_repeat 4 41 0 2 876 24 32 0 0 chr3 38201955 38201986 -121397797 + AT_rich Low_complexity Low_complexity 1 31 0 2 876 551 274 94 76 chr3 38202645 38202921 -121396862 + MTE2a LTR MaLR 7 287 -92 2 876 415 230 20 10 chr3 38203426 38203527 -121396256 + MTE2a LTR MaLR 278 379 0 2 876 288 308 0 90 chr3 38204301 38204401 -121395382 - B1F SINE Alu -58 91 1 2 876 26 0 0 0 chr3 38206442 38206468 -121393315 + AT_rich Low_complexity Low_complexity 1 26 0 2 876 6210 83 1 8 chr3 38206927 38207762 -121392021 + L1_Mus4 LINE L1 5807 6635 -1 2 876 203 0 0 154 chr3 38207975 38208066 -121391717 + (CAGAG)n Simple_repeat Simple_repeat 4 80 0 2 876 233 214 0 0 chr3 38208132 38208174 -121391609 + CT-rich Low_complexity Low_complexity 3 44 0 2 876 729 23 0 0 chr3 38209188 38209275 -121390508 + (TTCC)n Simple_repeat Simple_repeat 4 90 0 2 876 227 292 0 0 chr3 38209294 38209359 -121390424 + T-rich Low_complexity Low_complexity 1 65 0 2 876 270 215 0 0 chr3 38209360 38209439 -121390344 + (TG)n Simple_repeat Simple_repeat 1 79 0 2 876 360 148 0 0 chr3 38209439 38209500 -121390283 + (TA)n Simple_repeat Simple_repeat 1 61 0 2 876 198 0 0 0 chr3 38209500 38209522 -121390261 + (TG)n Simple_repeat Simple_repeat 1 22 0 2 876 259 229 16 0 chr3 38209532 38209593 -121390190 - RSINE1 SINE B4 -87 78 17 2 876 573 243 158 11 chr3 38209629 38209812 -121389971 - ID_B1 SINE B4 -13 211 2 2 876 29 28 0 0 chr3 38210450 38210486 -121389297 + AT_rich Low_complexity Low_complexity 1 36 0 2 876 21 0 0 0 chr3 38211701 38211722 -121388061 + AT_rich Low_complexity Low_complexity 1 21 0 2 876 531 45 0 0 chr3 38212112 38212178 -121387605 + (TG)n Simple_repeat Simple_repeat 1 66 0 2 876 1057 243 5 5 chr3 38213411 38213622 -121386161 + B3 SINE B2 1 211 -5 2 876 248 77 26 0 chr3 38213622 38213661 -121386122 + (CAAAA)n Simple_repeat Simple_repeat 1 40 0 2 876 180 77 0 0 chr3 38213666 38213692 -121386091 + (GAAA)n Simple_repeat Simple_repeat 3 28 0 2 876 557 272 97 40 chr3 38213714 38214041 -121385742 + ORR1E LTR MaLR 1 366 -4 2 876 1007 74 25 0 chr3 38214042 38214205 -121385578 + (TG)n Simple_repeat Simple_repeat 1 167 0 2 876 200 256 0 17 chr3 38214245 38214364 -121385419 + (CATA)n Simple_repeat Simple_repeat 2 118 0 2 876 837 117 0 0 chr3 38214395 38214523 -121385260 + (TAGA)n Simple_repeat Simple_repeat 4 131 0 3 876 1727 239 9 57 chr3 38214529 38214650 -121385133 + MTC LTR MaLR 1 119 -302 3 876 208 0 0 59 chr3 38214650 38214684 -121385099 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 3 876 1115 97 0 0 chr3 38214690 38214835 -121384948 - B1_Mus1 SINE Alu 0 148 4 3 876 1727 239 9 57 chr3 38214835 38215145 -121384638 + MTC LTR MaLR 120 418 -3 3 876 206 81 27 0 chr3 38215146 38215183 -121384600 + (CA)n Simple_repeat Simple_repeat 1 38 0 3 876 23 0 0 0 chr3 38216771 38216794 -121382989 + AT_rich Low_complexity Low_complexity 1 23 0 3 876 804 134 0 0 chr3 38218262 38218404 -121381379 + ORR1C1 LTR MaLR 1 142 -236 3 876 522 175 10 0 chr3 38218402 38218499 -121381284 + ORR1C1 LTR MaLR 281 378 0 3 876 619 238 236 6 chr3 38218752 38218934 -121380849 + ID_B1 SINE B4 1 224 0 3 876 419 187 3 28 chr3 38218982 38219071 -121380712 + PB1D10 SINE Alu 13 101 -48 3 876 278 0 0 51 chr3 38219071 38219110 -121380673 + (TTAAA)n Simple_repeat Simple_repeat 4 40 0 3 876 399 252 34 51 chr3 38219110 38219137 -121380646 + B1F1 SINE Alu 102 127 -22 3 876 410 244 7 0 chr3 38219195 38219330 -121380453 + (TA)n Simple_repeat Simple_repeat 2 137 0 3 876 1010 256 74 22 chr3 38219611 38219934 -121379849 - ORR1E LTR MaLR 0 359 20 3 876 1688 139 165 12 chr3 38219957 38220285 -121379498 + ORR1C1 LTR MaLR 1 378 0 3 876 288 0 0 0 chr3 38220485 38220517 -121379266 + (CAA)n Simple_repeat Simple_repeat 2 33 0 3 876 21 36 0 0 chr3 38221230 38221258 -121378525 + AT_rich Low_complexity Low_complexity 1 28 0 3 876 528 16 0 0 chr3 38225072 38225133 -121374650 + (CA)n Simple_repeat Simple_repeat 2 62 0 3 876 664 296 139 38 chr3 38225358 38225721 -121374062 + Lx8 LINE L1 6876 7281 -363 3 876 378 0 0 0 chr3 38225744 38225786 -121373997 + (CA)n Simple_repeat Simple_repeat 1 42 0 3 876 492 340 6 0 chr3 38226159 38226321 -121373462 + (CA)n Simple_repeat Simple_repeat 2 164 0 3 876 814 243 23 41 chr3 38227088 38227307 -121372476 + B3 SINE B2 2 216 0 3 876 1041 276 20 34 chr3 38228015 38228308 -121371475 + B4A SINE B4 2 290 -2 3 876 213 342 128 57 chr3 38228508 38228719 -121371064 - L3 LINE CR1 -330 4159 3934 3 876 402 271 261 23 chr3 38228780 38228822 -121370961 - RMER15 LTR ERVL 0 575 528 3 876 552 81 0 0 chr3 38228822 38228909 -121370874 + (CA)n Simple_repeat Simple_repeat 2 88 0 3 876 402 271 261 23 chr3 38228909 38229123 -121370660 - RMER15 LTR ERVL -48 527 258 3 876 1135 239 29 59 chr3 38229137 38229444 -121370339 + ORR1E LTR MaLR 55 352 -7 3 876 287 396 19 29 chr3 38229647 38229751 -121370032 - PB1D10 SINE Alu -12 105 3 3 876 305 288 58 138 chr3 38231371 38231560 -121368223 + MT2B LTR ERVL 87 260 -341 3 876 377 331 0 47 chr3 38231447 38231574 -121368209 + ID_B1 SINE B4 79 199 -25 3 876 664 239 0 0 chr3 38231464 38231581 -121368202 + B1_Mur1 SINE Alu 12 128 -21 3 876 1008 261 59 85 chr3 38231780 38232169 -121367614 - MTE2a LTR MaLR 0 379 1 3 876 871 328 123 33 chr3 38232299 38233257 -121366526 + L1M4 LINE L1 242 1285 -5257 3 876 189 74 0 0 chr3 38233268 38233295 -121366488 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3 876 231 180 0 20 chr3 38233495 38233501 -121366282 + (CA)n Simple_repeat Simple_repeat 1 6 0 3 876 756 298 65 25 chr3 38233501 38233780 -121366003 + B4A SINE B4 1 290 -2 3 876 231 180 0 20 chr3 38233780 38233824 -121365959 + (CA)n Simple_repeat Simple_repeat 1 43 0 3 876 277 294 24 48 chr3 38233917 38234042 -121365741 + L1M4 LINE L1 4052 4173 -2471 3 876 981 251 86 45 chr3 38234044 38234215 -121365568 - MTE2a LTR MaLR -9 370 190 3 876 432 91 0 0 chr3 38234215 38234281 -121365502 + (CTTG)n Simple_repeat Simple_repeat 3 68 0 3 876 981 284 80 35 chr3 38234281 38234497 -121365286 - MTE2a LTR MaLR -192 227 3 3 876 713 294 100 37 chr3 38234542 38234836 -121364947 + L1M4 LINE L1 5369 5697 -947 3 876 487 248 0 71 chr3 38234836 38234962 -121364821 + PB1D10 SINE Alu 1 117 0 3 876 713 292 89 34 chr3 38234962 38235316 -121364467 + L1M4 LINE L1 5698 6065 -607 3 876 243 295 179 0 chr3 38237449 38237544 -121362239 + PB1D10 SINE Alu 1 112 -5 3 876 338 231 11 0 chr3 38237556 38237647 -121362136 + GA-rich Low_complexity Low_complexity 4 95 0 3 876 1454 33 0 6 chr3 38237636 38237735 -121362048 + (GAA)n Simple_repeat Simple_repeat 1 99 0 3 876 1620 0 0 0 chr3 38237735 38237915 -121361868 + (GGAGAA)n Simple_repeat Simple_repeat 1 180 0 3 876 1454 33 0 6 chr3 38237915 38237996 -121361787 + (GAA)n Simple_repeat Simple_repeat 1 81 0 3 876 251 203 16 0 chr3 38237996 38238060 -121361723 + GA-rich Low_complexity Low_complexity 1 65 0 3 876 420 254 147 53 chr3 38238099 38238249 -121361534 + RSINE1 SINE B4 2 165 0 3 876 291 54 0 0 chr3 38238269 38238306 -121361477 + (TG)n Simple_repeat Simple_repeat 2 38 0 3 876 25 65 0 0 chr3 38238312 38238358 -121361425 + AT_rich Low_complexity Low_complexity 1 46 0 3 876 714 297 52 75 chr3 38240531 38240877 -121358906 + ORR1E LTR MaLR 2 339 -20 3 876 909 250 76 66 chr3 38240902 38241219 -121358564 - ORR1E LTR MaLR -39 320 1 3 876 1043 200 82 85 chr3 38241219 38241525 -121358258 - ORR1E-int LTR MaLR 0 1370 1066 3 876 238 167 0 0 chr3 38241533 38241575 -121358208 - B3A SINE B2 -153 45 4 3 876 1981 132 6 100 chr3 38241630 38241742 -121358041 + ORR1A2 LTR MaLR 1 92 -235 3 876 6399 64 2 10 chr3 38241742 38242528 -121357255 + L1Md_F2 LINE L1 5801 6580 -2 3 876 1981 132 6 100 chr3 38242528 38242776 -121357007 + ORR1A2 LTR MaLR 93 327 0 3 876 23 0 0 0 chr3 38243008 38243031 -121356752 + AT_rich Low_complexity Low_complexity 1 23 0 3 876 1015 315 50 65 chr3 38243879 38244419 -121355364 - RMER5 LTR ERV1 -2 532 1 3 876 564 288 57 88 chr3 38244662 38244698 -121355085 - B3 SINE B2 -28 188 153 3 876 279 114 0 0 chr3 38244698 38244742 -121355041 + (TG)n Simple_repeat Simple_repeat 1 44 0 3 876 622 261 64 58 chr3 38244742 38244899 -121354884 - B3A SINE B2 -42 156 1 3 876 1520 53 16 31 chr3 38245139 38245333 -121354450 - B2_Mm2 SINE B2 -3 192 2 3 876 2427 158 14 77 chr3 38246023 38246518 -121353265 + RMER1A Other Other 552 1015 -15 3 876 22 70 0 0 chr3 38248082 38248125 -121351658 + AT_rich Low_complexity Low_complexity 1 43 0 3 876 494 263 58 7 chr3 38248358 38248496 -121351287 + B1F2 SINE Alu 5 149 0 3 876 197 173 58 0 chr3 38249611 38249663 -121350120 + (CATATA)n Simple_repeat Simple_repeat 2 56 0 3 876 1778 176 65 4 chr3 38251787 38252273 -121347510 - RLTR20D LTR ERVK 0 568 1 3 876 6337 147 62 16 chr3 38252273 38252310 -121347473 - MYSERV16_I-int LTR ERVK 0 2326 2298 3 876 213 65 0 0 chr3 38252310 38252341 -121347442 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 3 876 6337 147 62 16 chr3 38252341 38253516 -121346267 - MYSERV16_I-int LTR ERVK -29 2297 1058 3 876 3095 107 9 11 chr3 38253632 38254068 -121345715 + L1_Mus3 LINE L1 6198 6632 -6 3 876 2929 47 21 0 chr3 38254071 38254410 -121345373 + ORR1A1 LTR MaLR 1 346 0 3 876 184 30 61 0 chr3 38254429 38254462 -121345321 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 3 876 378 250 205 60 chr3 38254515 38254783 -121345000 + Lx8 LINE L1 7161 7467 -6 3 876 257 276 132 21 chr3 38254986 38254999 -121344784 - B1F1 SINE Alu -20 128 77 3 876 294 214 126 35 chr3 38254999 38255086 -121344697 - ID_B1 SINE B4 -32 192 98 3 876 257 276 132 21 chr3 38255086 38255102 -121344681 - B1F1 SINE Alu -20 76 1 3 876 618 237 72 17 chr3 38255602 38255914 -121343869 - MTEb LTR MaLR -8 371 8 3 876 636 280 97 31 chr3 38257383 38257578 -121342205 + ID_B1 SINE B4 5 212 -12 3 876 315 71 0 0 chr3 38257578 38257620 -121342163 + (TAAA)n Simple_repeat Simple_repeat 3 44 0 3 876 217 267 10 91 chr3 38258473 38258572 -121341211 + RSINE1 SINE B4 75 165 0 3 876 297 228 0 0 chr3 38258572 38258651 -121341132 + (CA)n Simple_repeat Simple_repeat 1 79 0 3 876 485 282 8 8 chr3 38259978 38260096 -121339687 - B1_Mur2 SINE Alu -20 129 12 3 876 281 359 102 8 chr3 38260002 38260120 -121339663 - B4 SINE B4 -98 194 66 3 876 22 0 0 0 chr3 38260298 38260320 -121339463 + AT_rich Low_complexity Low_complexity 1 22 0 3 876 363 238 29 10 chr3 38260896 38260998 -121338785 + L1ME1 LINE L1 6058 6161 -18 3 876 809 261 48 19 chr3 38261138 38261345 -121338438 + B3 SINE B2 2 214 -2 3 876 609 69 0 0 chr3 38261810 38261897 -121337886 + (TG)n Simple_repeat Simple_repeat 1 87 0 3 876 310 215 0 15 chr3 38262192 38262258 -121337525 - B3A SINE B2 -133 65 1 3 876 459 0 0 0 chr3 38262270 38262321 -121337462 + (TG)n Simple_repeat Simple_repeat 2 52 0 3 876 787 245 55 6 chr3 38262323 38262487 -121337296 - B3A SINE B2 -25 173 2 3 876 427 280 64 32 chr3 38262717 38262905 -121336878 - MER45B DNA Tip100 -74 966 773 3 876 771 234 37 37 chr3 38263692 38263883 -121335900 + B3 SINE B2 23 213 -3 3 876 468 139 0 0 chr3 38263909 38263988 -121335795 + (GGA)n Simple_repeat Simple_repeat 2 80 0 3 876 1350 157 42 0 chr3 38264501 38264717 -121335066 + URR1B DNA MER1_type 1 225 0 3 876 651 306 139 0 chr3 38264957 38265209 -121334574 + B4A SINE B4 3 289 -3 3 876 479 248 43 61 chr3 38265512 38265675 -121334108 - RMER30 DNA MER1_type -36 166 7 3 876 3933 186 58 30 chr3 38265869 38266581 -121333202 + RMER1A Other Other 179 901 -129 3 876 477 0 0 0 chr3 38266581 38266634 -121333149 + (TG)n Simple_repeat Simple_repeat 2 54 0 3 876 3933 186 58 30 chr3 38266634 38266734 -121333049 + RMER1A Other Other 902 1013 -17 3 876 589 269 0 45 chr3 38267228 38267384 -121332399 + B1F1 SINE Alu 1 149 0 3 876 180 111 0 0 chr3 38267386 38267413 -121332370 + (CAAA)n Simple_repeat Simple_repeat 1 27 0 3 876 455 321 115 52 chr3 38267427 38267696 -121332087 - MLT1A0 LTR MaLR -6 359 74 3 876 1608 178 140 15 chr3 38267930 38268272 -121331511 - ORR1B1 LTR MaLR -9 385 1 3 876 290 282 112 8 chr3 38268554 38268679 -121331104 - LTR50 LTR ERVL -12 783 646 3 876 268 309 112 141 chr3 38268667 38269115 -121330668 - LTR50 LTR ERVL -322 473 39 3 876 23 0 0 0 chr3 38271469 38271492 -121328291 + AT_rich Low_complexity Low_complexity 1 23 0 3 876 315 286 24 48 chr3 38272667 38272792 -121326991 + L2a LINE L2 3288 3409 -17 3 877 5827 114 33 8 chr3 38274564 38275386 -121324397 - Lx LINE L1 -8 6646 5805 3 877 6978 101 25 10 chr3 38275389 38277357 -121322426 - L1VL2 LINE L1 -1668 1947 9 4 877 603 282 0 32 chr3 38277894 38278048 -121321735 - B1_Mur1 SINE Alu 0 149 1 4 877 378 195 0 0 chr3 38278199 38278276 -121321507 + (TG)n Simple_repeat Simple_repeat 2 78 0 4 877 525 240 169 0 chr3 38278279 38278433 -121321350 - B4A SINE B4 -4 288 109 4 877 21 0 0 0 chr3 38278511 38278532 -121321251 + AT_rich Low_complexity Low_complexity 1 21 0 4 877 854 196 60 5 chr3 38280169 38280369 -121319414 - MTD LTR MaLR 0 419 209 4 877 225 0 0 0 chr3 38280526 38280551 -121319232 + (CA)n Simple_repeat Simple_repeat 2 26 0 4 877 359 274 0 47 chr3 38281051 38281158 -121318625 + RSINE1 SINE B4 36 137 -28 4 877 23 54 0 0 chr3 38281185 38281222 -121318561 + AT_rich Low_complexity Low_complexity 1 37 0 4 877 216 0 0 0 chr3 38281392 38281416 -121318367 + (TC)n Simple_repeat Simple_repeat 2 25 0 4 877 207 69 0 0 chr3 38282504 38282533 -121317250 + (CAT)n Simple_repeat Simple_repeat 2 30 0 4 877 543 283 0 0 chr3 38282533 38282671 -121317112 - B1_Mur3 SINE Alu -11 138 1 4 877 417 39 0 0 chr3 38282911 38282962 -121316821 + (CA)n Simple_repeat Simple_repeat 1 51 0 4 877 434 333 35 0 chr3 38283038 38283182 -121316601 + B1_Mur1 SINE Alu 1 149 0 4 877 1327 159 134 15 chr3 38283509 38283777 -121316006 + MT2A LTR ERVL 1 300 -233 4 877 246 62 0 0 chr3 38283975 38284007 -121315776 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 4 877 1174 62 0 27 chr3 38284011 38284161 -121315622 - B1_Mm SINE Alu 0 147 2 4 877 3073 147 66 112 chr3 38284161 38284797 -121314986 - RMER19C LTR ERVK -4 607 1 4 877 224 30 0 29 chr3 38284980 38285014 -121314769 + (CAAAA)n Simple_repeat Simple_repeat 2 34 0 4 877 255 261 111 22 chr3 38285125 38285215 -121314568 - MTEa LTR MaLR -239 140 43 4 877 274 246 14 0 chr3 38285229 38285298 -121314485 - MTEa LTR MaLR -24 355 286 4 877 196 28 83 0 chr3 38285578 38285614 -121314169 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 4 877 226 164 18 18 chr3 38285754 38285810 -121313973 + MER74A LTR ERVL 301 356 -202 4 877 1486 236 150 30 chr3 38286312 38286771 -121313012 + RMER15 LTR ERVL 47 560 -15 4 877 732 195 0 8 chr3 38286976 38287100 -121312683 + B1_Mur1 SINE Alu 6 128 -21 4 877 216 111 0 0 chr3 38287100 38287136 -121312647 + (GA)n Simple_repeat Simple_repeat 1 36 0 4 877 198 167 0 0 chr3 38287174 38287210 -121312573 + GA-rich Low_complexity Low_complexity 2 37 0 4 877 1439 28 6 0 chr3 38287218 38287394 -121312389 + (GGAGA)n Simple_repeat Simple_repeat 3 179 0 4 877 932 53 53 6 chr3 38287415 38287585 -121312198 + (GGA)n Simple_repeat Simple_repeat 1 178 0 4 877 427 278 7 73 chr3 38287611 38287747 -121312036 + B1_Mus2 SINE Alu 1 127 -20 4 877 26 30 0 0 chr3 38288489 38288522 -121311261 + AT_rich Low_complexity Low_complexity 1 33 0 4 877 2128 171 38 0 chr3 38288940 38289308 -121310475 - RLTR14 LTR ERV1 0 382 1 4 877 868 232 82 0 chr3 38289331 38289525 -121310258 + B3 SINE B2 1 210 -6 4 877 5194 53 5 17 chr3 38289852 38290510 -121309273 - L1Md_F2 LINE L1 0 6582 5933 4 877 3185 28 3 0 chr3 38290866 38291269 -121308514 - L1Md_F2 LINE L1 -633 5949 5546 4 877 638 187 148 66 chr3 38291647 38291830 -121307953 - B3A SINE B2 0 198 1 4 877 1581 252 35 18 chr3 38291926 38292093 -121307690 + MTD LTR MaLR 1 169 -250 4 877 1284 220 177 73 chr3 38292093 38292574 -121307209 + MT2A LTR ERVL 1 531 -2 4 877 1581 252 35 18 chr3 38292574 38292805 -121306978 + MTD LTR MaLR 170 406 -13 4 877 289 282 75 27 chr3 38292843 38293029 -121306754 - L1M5 LINE L1 -2346 3800 3606 4 877 861 265 86 11 chr3 38293219 38293534 -121306249 + MTD LTR MaLR 71 405 -14 4 877 300 268 108 16 chr3 38293675 38293804 -121305979 + MLT1C LTR MaLR 68 208 -259 4 877 227 276 11 33 chr3 38294332 38294389 -121305394 + polypyrimidine Low_complexity Low_complexity 34 89 0 4 877 1007 39 0 8 chr3 38294389 38294518 -121305265 + (TTCCC)n Simple_repeat Simple_repeat 5 132 0 4 877 227 276 11 33 chr3 38294518 38294550 -121305233 + polypyrimidine Low_complexity Low_complexity 2 33 0 4 877 401 0 20 0 chr3 38294955 38295004 -121304779 + (TG)n Simple_repeat Simple_repeat 2 51 0 4 877 953 224 124 16 chr3 38295064 38295313 -121304470 - B4A SINE B4 -12 280 5 4 877 807 291 31 113 chr3 38296695 38297013 -121302770 - B4A SINE B4 0 292 1 4 877 21 0 0 0 chr3 38297028 38297049 -121302734 + AT_rich Low_complexity Low_complexity 1 21 0 4 877 231 149 85 0 chr3 38297901 38297948 -121301835 - PB1D10 SINE Alu 0 117 67 4 877 437 227 100 0 chr3 38297906 38298016 -121301767 - ID_B1 SINE B4 -5 219 99 4 877 619 155 91 23 chr3 38298634 38298766 -121301017 + B1_Mur1 SINE Alu 9 149 0 4 877 324 0 0 0 chr3 38299126 38299162 -121300621 + (TA)n Simple_repeat Simple_repeat 1 36 0 4 877 267 31 0 0 chr3 38299180 38299212 -121300571 + (TG)n Simple_repeat Simple_repeat 2 33 0 4 877 483 318 82 63 chr3 38299237 38299506 -121300277 - B4 SINE B4 -18 274 1 4 877 414 204 48 0 chr3 38299508 38299611 -121300172 - L1MA6 LINE L1 -49 6251 6144 4 877 673 304 16 11 chr3 38299615 38299798 -121299985 + B3A SINE B2 4 187 -11 4 877 343 164 248 46 chr3 38300008 38300117 -121299666 - RLTR25A LTR ERVK 0 1028 898 4 877 508 176 46 149 chr3 38300096 38300270 -121299513 - RLTR25A LTR ERVK -253 775 620 4 877 1155 168 76 239 chr3 38300227 38300451 -121299332 - ORR1A3-int LTR MaLR -999 964 650 4 877 1289 139 60 56 chr3 38300451 38300703 -121299080 - MT2B LTR ERVL -314 287 35 4 877 1155 168 76 239 chr3 38300703 38300808 -121298975 - ORR1A3-int LTR MaLR -999 649 499 4 877 2392 198 36 14 chr3 38300731 38301237 -121298546 - RLTR25A LTR ERVK -580 523 7 4 877 1405 257 93 49 chr3 38301247 38301848 -121297935 - L1MA6 LINE L1 -398 5902 5269 4 877 12555 62 4 4 chr3 38301848 38303439 -121296344 + L1Md_F2 LINE L1 3997 5586 -297 4 877 7604 63 17 12 chr3 38303440 38304429 -121295354 + L1Md_F2 LINE L1 5588 6581 -1 4 877 282 257 0 14 chr3 38305373 38305444 -121294339 + B4A SINE B4 219 288 -4 4 877 213 233 16 16 chr3 38305478 38305539 -121294244 + (CA)n Simple_repeat Simple_repeat 2 62 0 4 877 1178 194 132 80 chr3 38305606 38305971 -121293812 + ORR1C2 LTR MaLR 1 384 0 4 877 487 285 120 22 chr3 38305984 38306300 -121293483 + L1MC3 LINE L1 6958 7304 -481 4 877 753 226 216 5 chr3 38306365 38306583 -121293200 + MTEa LTR MaLR 21 284 -95 4 877 241 224 132 75 chr3 38306637 38306743 -121293040 + MTEa LTR MaLR 259 370 -9 4 877 180 0 0 0 chr3 38306888 38306908 -121292875 + (TG)n Simple_repeat Simple_repeat 1 20 0 4 877 1640 211 128 46 chr3 38306921 38307462 -121292321 - RMER4B LTR ERVK 0 585 1 4 877 481 256 50 131 chr3 38308357 38308694 -121291089 - RLTR15 LTR ERVK -15 344 35 4 877 332 345 0 7 chr3 38308688 38308828 -121290955 - B4 SINE B4 -143 149 11 4 877 546 0 136 0 chr3 38309126 38309280 -121290503 + (CAGG)n Simple_repeat Simple_repeat 2 176 0 4 877 481 160 9 9 chr3 38309321 38309428 -121290355 + GA-rich Low_complexity Low_complexity 4 110 0 4 877 666 319 38 11 chr3 38309659 38309922 -121289861 - Lx8 LINE L1 -84 7389 7120 4 877 435 268 4 8 chr3 38309996 38310251 -121289532 + (TGG)n Simple_repeat Simple_repeat 1 253 0 4 877 1189 201 35 18 chr3 38310266 38310549 -121289234 + ORR1D1 LTR MaLR 87 374 0 4 877 295 286 0 11 chr3 38310549 38310641 -121289142 + (TGG)n Simple_repeat Simple_repeat 3 93 0 4 877 454 244 84 13 chr3 38310781 38310935 -121288848 - Lx8 LINE L1 -1018 6455 6291 4 877 1096 289 49 46 chr3 38310977 38311343 -121288440 - ORR1D2 LTR MaLR 0 370 4 4 877 192 40 0 0 chr3 38311887 38311912 -121287871 + (TTTTG)n Simple_repeat Simple_repeat 4 28 0 4 877 219 242 0 127 chr3 38311933 38312004 -121287779 - B1F SINE Alu -46 103 42 4 877 255 247 0 0 chr3 38312006 38312157 -121287626 + CT-rich Low_complexity Low_complexity 1 151 0 4 877 198 0 0 0 chr3 38313000 38313022 -121286761 + (TG)n Simple_repeat Simple_repeat 2 23 0 4 877 378 0 0 0 chr3 38313281 38313323 -121286460 + (TG)n Simple_repeat Simple_repeat 2 43 0 4 877 376 298 49 21 chr3 38313327 38313471 -121286312 - RSINE1 SINE B4 -15 150 3 4 877 309 278 44 11 chr3 38313516 38313607 -121286176 + ID_B1 SINE B4 111 204 -20 4 877 350 364 0 14 chr3 38315606 38315751 -121284032 + GA-rich Low_complexity Low_complexity 3 145 0 4 877 21 0 0 0 chr3 38316262 38316283 -121283500 + AT_rich Low_complexity Low_complexity 1 21 0 4 877 704 234 21 32 chr3 38316373 38316563 -121283220 + ID_B1 SINE B4 37 224 0 4 877 435 83 0 0 chr3 38316673 38316733 -121283050 + (TCC)n Simple_repeat Simple_repeat 3 62 0 4 877 990 151 13 0 chr3 38316768 38316927 -121282856 - B2_Mm2 SINE B2 -23 172 12 4 877 273 29 0 0 chr3 38317241 38317275 -121282508 + (TC)n Simple_repeat Simple_repeat 1 34 0 4 877 246 95 0 0 chr3 38317275 38317316 -121282467 + (CA)n Simple_repeat Simple_repeat 1 42 0 4 877 1208 77 6 0 chr3 38317323 38317492 -121282291 + (GGA)n Simple_repeat Simple_repeat 2 171 0 4 877 951 271 66 32 chr3 38317526 38317873 -121281910 + ORR1E LTR MaLR 1 359 0 4 877 863 139 0 38 chr3 38317929 38318086 -121281697 + RLTR22_Mur LTR ERVK 1698 1848 0 4 877 252 167 133 0 chr3 38318112 38318172 -121281611 - L1M4 LINE L1 -1562 4584 4517 4 877 291 284 121 50 chr3 38318199 38318340 -121281443 + MLT1A0 LTR MaLR 21 171 -194 4 877 813 155 20 0 chr3 38319093 38319241 -121280542 - MYSERV16_I-int LTR ERVK -347 1979 1829 4 877 1690 214 68 11 chr3 38319970 38320352 -121279431 - MTD LTR MaLR -15 404 1 4 877 29 78 0 0 chr3 38320460 38320524 -121279259 + AT_rich Low_complexity Low_complexity 1 64 0 4 877 26 30 0 0 chr3 38321465 38321498 -121278285 + AT_rich Low_complexity Low_complexity 1 33 0 4 877 478 323 38 0 chr3 38321800 38321958 -121277825 + RSINE1 SINE B4 1 164 -1 4 877 27 0 0 0 chr3 38321996 38322023 -121277760 + AT_rich Low_complexity Low_complexity 1 27 0 4 877 368 255 47 9 chr3 38323873 38323980 -121275803 - PB1D7 SINE Alu -1 119 9 5 877 389 318 57 17 chr3 38324415 38324591 -121275192 + B3A SINE B2 1 183 -15 5 877 659 36 0 0 chr3 38325025 38325109 -121274674 + MTA_Mm LTR MaLR 1 84 -312 5 877 4548 52 7 2 chr3 38325085 38325728 -121274055 + MTA_Mm-int LTR MaLR 482 1154 -638 5 877 3449 28 5 2 chr3 38325728 38326123 -121273660 + MTA_Mm LTR MaLR 1 396 0 5 877 637 280 73 39 chr3 38326527 38326761 -121273022 + MTD LTR MaLR 23 264 -155 5 877 255 296 114 0 chr3 38326771 38326859 -121272924 + PB1 SINE Alu 24 121 -6 5 877 27 0 0 0 chr3 38327521 38327548 -121272235 + AT_rich Low_complexity Low_complexity 1 27 0 5 877 418 206 83 20 chr3 38328378 38328394 -121271389 + PB1D10 SINE Alu 1 40 -109 5 877 435 149 0 26 chr3 38328394 38328470 -121271313 + ID_B1 SINE B4 99 172 -52 5 877 418 206 83 20 chr3 38328470 38328505 -121271278 + PB1D10 SINE Alu 41 136 -13 5 877 421 256 21 8 chr3 38329387 38329521 -121270262 - B4A SINE B4 -82 142 3 5 877 255 260 27 14 chr3 38329724 38329798 -121269985 + ID4 SINE ID 8 82 -1 5 877 256 356 59 14 chr3 38331049 38331126 -121268657 + RMER5 LTR ERV1 49 132 -402 5 877 198 0 0 0 chr3 38331126 38331148 -121268635 + (CACCC)n Simple_repeat Simple_repeat 3 24 0 5 877 256 356 59 14 chr3 38331148 38331292 -121268491 + RMER5 LTR ERV1 133 279 -255 5 877 294 347 69 6 chr3 38331320 38331494 -121268289 + RMER5 LTR ERV1 350 534 0 5 877 189 0 0 0 chr3 38331653 38331674 -121268109 + (TG)n Simple_repeat Simple_repeat 2 22 0 5 877 313 227 93 0 chr3 38331685 38331760 -121268023 - RSINE1 SINE B4 -75 90 9 5 877 495 266 17 90 chr3 38331873 38332051 -121267732 - ID_B1 SINE B4 -10 214 50 5 877 1241 169 226 7 chr3 38334042 38334339 -121265444 + ORR1D1 LTR MaLR 1 362 -12 5 877 3847 136 90 42 chr3 38334701 38335212 -121264571 - RMER19A LTR ERVK 0 737 192 5 877 1184 62 7 0 chr3 38335212 38335357 -121264426 - B1_Mm SINE Alu -1 146 1 5 877 3847 144 81 38 chr3 38335357 38335531 -121264252 - RMER19A LTR ERVK -546 191 38 5 877 443 129 10 0 chr3 38335502 38335579 -121264204 - RMER19A LTR ERVK -765 137 38 5 877 247 255 175 61 chr3 38335517 38335797 -121263986 + MER31B LTR ERV1 103 414 -52 5 877 2522 137 50 5 chr3 38336172 38336575 -121263208 + MTC LTR MaLR 1 421 0 5 877 1564 185 109 26 chr3 38336725 38337074 -121262709 - ORR1C1 LTR MaLR 0 378 1 5 877 1314 196 161 3 chr3 38337227 38337513 -121262270 - MTC LTR MaLR 0 421 91 5 877 1718 145 148 33 chr3 38337519 38337883 -121261900 - RMER6A LTR ERVK -1 755 350 5 877 2016 124 3 26 chr3 38338805 38339112 -121260671 - RMER6A LTR ERVK -456 300 1 5 877 309 185 0 30 chr3 38339112 38339171 -121260612 - MTC LTR MaLR -332 89 33 5 877 1385 147 5 0 chr3 38339171 38339382 -121260401 - URR1A DNA MER1_type 0 226 15 5 877 252 103 26 0 chr3 38339388 38339427 -121260356 - MTC LTR MaLR -381 40 1 5 877 258 284 120 8 chr3 38339586 38339703 -121260080 - MIRm SINE MIR -104 172 43 5 877 267 79 0 0 chr3 38340160 38340198 -121259585 + (CAAAT)n Simple_repeat Simple_repeat 2 39 0 5 877 266 338 0 0 chr3 38340266 38340340 -121259443 + ID4 SINE ID 5 78 -5 5 877 189 171 0 0 chr3 38341102 38341137 -121258646 + A-rich Low_complexity Low_complexity 1 35 0 5 877 455 176 18 81 chr3 38341137 38341152 -121258631 + MT2B2 LTR ERVL 154 161 -423 5 877 670 171 54 0 chr3 38341152 38341263 -121258520 + B1_Mm SINE Alu 1 117 -30 5 877 725 33 0 11 chr3 38341268 38341361 -121258422 + (GAAA)n Simple_repeat Simple_repeat 4 95 0 5 877 446 341 131 63 chr3 38343275 38343704 -121256079 + LTR40b LTR ERVL 3 460 -2 5 877 185 232 70 18 chr3 38344325 38344382 -121255401 - L2c LINE L2 -7 3380 3321 5 877 559 258 44 50 chr3 38344513 38344672 -121255111 - RSINE1 SINE B4 -4 161 4 5 877 497 281 49 24 chr3 38346786 38346950 -121252833 - B4 SINE B4 0 292 125 5 877 295 299 20 30 chr3 38347253 38347353 -121252430 + ID_B1 SINE B4 91 189 -35 5 877 1870 244 35 9 chr3 38347374 38347805 -121251978 + Lx6 LINE L1 6948 7389 -71 5 877 576 65 0 0 chr3 38348044 38348121 -121251662 + (CA)n Simple_repeat Simple_repeat 2 78 0 5 877 21 36 0 0 chr3 38348484 38348512 -121251271 + AT_rich Low_complexity Low_complexity 1 28 0 5 877 22 0 0 0 chr3 38349119 38349141 -121250642 + AT_rich Low_complexity Low_complexity 1 22 0 5 877 244 264 144 32 chr3 38350010 38350135 -121249648 - MamSINE1 SINE tRNA -5 285 147 5 877 21 0 0 0 chr3 38352167 38352188 -121247595 + AT_rich Low_complexity Low_complexity 1 21 0 5 877 511 211 53 44 chr3 38358205 38358319 -121241464 + PB1D10 SINE Alu 3 117 0 5 877 21 0 0 0 chr3 38358854 38358875 -121240908 + AT_rich Low_complexity Low_complexity 1 21 0 5 877 698 188 148 100 chr3 38360338 38360568 -121239215 - MTD LTR MaLR 0 419 179 5 877 537 224 19 0 chr3 38360908 38361015 -121238768 + B3A SINE B2 1 109 -89 5 877 358 297 76 23 chr3 38361496 38361627 -121238156 - B4A SINE B4 -153 139 2 5 877 1684 197 101 0 chr3 38362411 38362787 -121236996 + MTD LTR MaLR 6 419 0 5 877 3198 214 89 73 chr3 38362792 38363531 -121236252 + MTD-int LTR MaLR 286 1043 -215 5 877 2108 163 87 8 chr3 38363531 38363921 -121235862 - MTC LTR MaLR 0 421 1 5 877 3198 214 89 73 chr3 38363921 38363957 -121235826 + MTD-int LTR MaLR 1044 1068 -190 5 877 2043 162 111 8 chr3 38363957 38364336 -121235447 + MTC LTR MaLR 4 421 0 5 877 3198 214 89 73 chr3 38364336 38364511 -121235272 + MTD-int LTR MaLR 1069 1252 -6 5 877 1181 206 249 12 chr3 38364522 38364857 -121234926 + MTD LTR MaLR 3 404 -15 5 877 189 0 0 0 chr3 38365383 38365404 -121234379 + (CAAAAA)n Simple_repeat Simple_repeat 2 22 0 5 877 340 290 98 44 chr3 38366741 38367094 -121232689 + MLT2B4 LTR ERVL 1 506 -50 5 877 345 24 0 0 chr3 38367800 38367842 -121231941 + (CAA)n Simple_repeat Simple_repeat 1 42 0 5 877 2026 165 82 8 chr3 38367934 38368326 -121231457 + MTC LTR MaLR 1 421 0 5 877 227 297 53 42 chr3 38368838 38368933 -121230850 + B4 SINE B4 2 97 -195 5 877 288 0 0 0 chr3 38369709 38369741 -121230042 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 5 877 353 350 71 23 chr3 38370453 38370719 -121229064 + L1MEg2 LINE L1 216 494 -5958 5 877 277 321 77 36 chr3 38371094 38371262 -121228521 + B2_Mm2 SINE B2 1 175 -20 5 877 858 238 67 0 chr3 38371280 38371473 -121228310 - B3 SINE B2 -9 207 2 5 877 279 226 0 88 chr3 38371499 38371524 -121228259 + RSINE1 SINE B4 2 21 -144 5 877 3417 35 2 0 chr3 38371524 38371919 -121227864 - MTA_Mm LTR MaLR 0 396 1 5 877 279 226 0 88 chr3 38371919 38371961 -121227822 + RSINE1 SINE B4 22 63 -102 5 877 459 315 143 23 chr3 38372753 38373192 -121226591 + L2 LINE L2 2394 2885 -534 5 877 404 293 34 101 chr3 38373715 38373863 -121225920 + B3A SINE B2 61 198 0 5 877 182 229 276 0 chr3 38374789 38374894 -121224889 - L2 LINE L2 -686 2733 2600 5 877 1088 297 95 5 chr3 38375315 38375704 -121224079 + RCHARR1 DNA MER1_type 37 460 -514 5 877 218 215 15 15 chr3 38375727 38375793 -121223990 + (TTTG)n Simple_repeat Simple_repeat 3 68 0 5 877 426 39 0 0 chr3 38375808 38375860 -121223923 + (TA)n Simple_repeat Simple_repeat 1 52 0 5 877 242 51 0 49 chr3 38375865 38375906 -121223877 + (TCTCTG)n Simple_repeat Simple_repeat 2 40 0 5 877 628 253 77 0 chr3 38376106 38376276 -121223507 + B3A SINE B2 1 183 -15 5 877 562 300 11 44 chr3 38376499 38376702 -121223081 + B3A SINE B2 1 193 0 5 877 309 51 0 0 chr3 38378116 38378155 -121221628 + (TGAA)n Simple_repeat Simple_repeat 1 39 0 5 877 2608 110 26 31 chr3 38378617 38379038 -121220745 + MTC LTR MaLR 3 421 0 5 877 338 235 58 42 chr3 38379193 38379313 -121220470 - MLT1A1 LTR MaLR 0 408 287 5 877 896 246 191 3 chr3 38380024 38380315 -121219468 - ORR1E LTR MaLR 0 379 4 5 877 298 176 0 23 chr3 38380468 38380555 -121219228 + (TA)n Simple_repeat Simple_repeat 1 85 0 5 877 273 344 70 8 chr3 38380573 38380702 -121219081 + MIR SINE MIR 74 210 -52 5 877 224 225 32 32 chr3 38383636 38383760 -121216023 + (CCG)n Simple_repeat Simple_repeat 3 126 0 5 877 419 201 57 13 chr3 38384616 38384714 -121215069 - B1F SINE Alu -13 104 4 5 877 534 259 9 3 chr3 38384927 38385055 -121214728 - B1_Mur1 SINE Alu -20 129 4 5 877 804 313 86 38 chr3 38385059 38385777 -121214006 - BLACKJACK DNA AcHobo -291 2653 1901 5 877 471 18 0 0 chr3 38386089 38386145 -121213638 + (TG)n Simple_repeat Simple_repeat 1 56 0 5 877 213 39 0 0 chr3 38386147 38386173 -121213610 + (GA)n Simple_repeat Simple_repeat 2 27 0 5 877 255 256 91 23 chr3 38386328 38386416 -121213367 - BLACKJACK DNA AcHobo -2734 210 117 5 877 450 291 22 73 chr3 38386505 38386642 -121213141 + B1F SINE Alu 5 134 -15 5 877 440 166 149 41 chr3 38387641 38387792 -121211991 + B3 SINE B2 2 166 -29 5 877 378 0 0 0 chr3 38387792 38387834 -121211949 + (CA)n Simple_repeat Simple_repeat 2 43 0 5 877 439 229 130 76 chr3 38387834 38387866 -121211917 + B2_Mm2 SINE B2 167 195 0 5 877 236 193 18 0 chr3 38389044 38389101 -121210682 - MTEb LTR MaLR -2 377 320 5 877 341 306 62 7 chr3 38389120 38389265 -121210518 + MTE2a LTR MaLR 39 191 -188 5 877 682 223 149 5 chr3 38389959 38390153 -121209630 - MTD LTR MaLR 0 419 198 5 877 557 210 200 14 chr3 38390184 38390329 -121209454 - B3 SINE B2 -17 199 28 5 877 660 282 81 5 chr3 38390324 38390534 -121209249 - MTD LTR MaLR -193 226 1 5 877 292 340 157 24 chr3 38390664 38390996 -121208787 + MLT1E2 LTR MaLR 250 625 -2 5 877 223 200 18 0 chr3 38391143 38391198 -121208585 + A-rich Low_complexity Low_complexity 2 57 0 5 877 322 250 87 40 chr3 38391768 38391918 -121207865 + MLT1B-int LTR MaLR 931 1087 -402 5 877 188 182 0 22 chr3 38391996 38392041 -121207742 + CT-rich Low_complexity Low_complexity 3 46 0 5 877 418 215 72 36 chr3 38392072 38392183 -121207600 - PB1D10 SINE Alu -2 115 1 5 877 255 257 9 122 chr3 38392219 38392334 -121207449 + B3A SINE B2 96 197 -1 5 877 411 334 85 3 chr3 38393005 38393299 -121206484 + MLT1B LTR MaLR 73 390 0 5 877 1177 197 184 0 chr3 38393635 38393944 -121205839 - MTE2b LTR MaLR -13 366 1 5 877 465 307 108 28 chr3 38394675 38395110 -121204673 - Charlie1a DNA MER1_type -116 1339 870 5 877 729 242 104 0 chr3 38395500 38395682 -121204101 - B3 SINE B2 -14 202 2 5 877 428 346 18 36 chr3 38395684 38395906 -121203877 - Charlie1a DNA MER1_type -799 656 439 5 877 285 75 0 0 chr3 38396228 38396268 -121203515 + (CA)n Simple_repeat Simple_repeat 1 40 0 6 877 545 158 61 0 chr3 38396366 38396471 -121203312 - PB1D9 SINE Alu -1 126 9 6 877 582 340 68 61 chr3 38396477 38396906 -121202877 + MLT2B3 LTR ERVL 46 477 -77 6 877 189 0 0 0 chr3 38397493 38397514 -121202269 + (CCCCCA)n Simple_repeat Simple_repeat 3 23 0 6 877 434 232 53 0 chr3 38397930 38398025 -121201758 - PB1D10 SINE Alu -2 115 16 6 877 434 189 9 0 chr3 38399276 38399316 -121200467 + polypyrimidine Low_complexity Low_complexity 67 107 0 6 877 1538 11 0 6 chr3 38399316 38399497 -121200286 + (TCTCC)n Simple_repeat Simple_repeat 1 180 0 6 877 434 189 9 0 chr3 38399497 38399531 -121200252 + polypyrimidine Low_complexity Low_complexity 33 66 0 6 877 1070 125 6 0 chr3 38399531 38399707 -121200076 + (TCTCC)n Simple_repeat Simple_repeat 4 180 0 6 877 434 189 9 0 chr3 38399707 38399737 -121200046 + polypyrimidine Low_complexity Low_complexity 3 32 0 6 877 304 194 32 0 chr3 38399842 38399904 -121199879 + PB1D9 SINE Alu 51 114 -6 6 877 459 245 6 44 chr3 38399962 38400120 -121199663 + RMER30 DNA MER1_type 17 168 -34 6 877 318 311 25 124 chr3 38400183 38400458 -121199325 + MTEa LTR MaLR 75 322 -57 6 877 666 0 0 0 chr3 38400529 38400603 -121199180 + (TC)n Simple_repeat Simple_repeat 1 74 0 6 877 269 158 140 0 chr3 38400770 38400827 -121198956 + ID4_ SINE ID 1 65 -18 6 877 452 18 18 0 chr3 38401601 38401658 -121198125 + (TC)n Simple_repeat Simple_repeat 2 59 0 6 877 432 0 0 0 chr3 38401658 38401705 -121198078 + (TG)n Simple_repeat Simple_repeat 1 48 0 6 877 847 230 253 48 chr3 38401780 38402257 -121197526 + RMER4B LTR ERVK 1 576 -9 6 877 690 288 65 22 chr3 38402264 38402495 -121197288 - B4 SINE B4 -51 241 1 6 877 396 0 0 0 chr3 38403240 38403284 -121196499 + (TG)n Simple_repeat Simple_repeat 1 44 0 6 877 280 277 12 0 chr3 38403307 38403390 -121196393 + (TG)n Simple_repeat Simple_repeat 2 85 0 6 877 227 103 26 0 chr3 38403390 38403429 -121196354 + (TC)n Simple_repeat Simple_repeat 1 40 0 6 877 207 0 0 0 chr3 38403429 38403452 -121196331 + (TG)n Simple_repeat Simple_repeat 2 24 0 6 877 509 279 20 7 chr3 38403454 38403602 -121196181 - B4 SINE B4 -23 269 120 6 877 26 64 0 0 chr3 38403628 38403675 -121196108 + AT_rich Low_complexity Low_complexity 1 47 0 6 877 2153 106 55 33 chr3 38403729 38404091 -121195692 - L1_Mus4 LINE L1 -1 6635 6266 6 878 283 256 1 67 chr3 38404213 38404330 -121195453 + PB1D10 SINE Alu 6 118 -2 6 878 3449 23 5 10 chr3 38404486 38404884 -121194899 + MTA_Mm LTR MaLR 1 396 0 6 878 2252 150 51 3 chr3 38405922 38406296 -121193487 + ORR1B1 LTR MaLR 3 394 0 6 878 402 21 0 0 chr3 38406320 38406367 -121193416 + (TG)n Simple_repeat Simple_repeat 2 48 0 6 878 280 328 80 22 chr3 38406381 38406518 -121193265 - B3 SINE B2 -71 145 1 6 878 27 29 0 0 chr3 38406654 38406688 -121193095 + AT_rich Low_complexity Low_complexity 1 34 0 6 878 183 179 29 15 chr3 38406807 38406875 -121192908 + (CA)n Simple_repeat Simple_repeat 1 69 0 6 878 430 303 129 37 chr3 38407698 38407993 -121191790 - MLT1A LTR MaLR -52 322 1 6 878 920 250 5 0 chr3 38408097 38408305 -121191478 - B3 SINE B2 -4 212 4 6 878 284 151 0 36 chr3 38408320 38408375 -121191408 - MT2B LTR ERVL -1 600 548 6 878 209 33 33 0 chr3 38408441 38408471 -121191312 + (TATG)n Simple_repeat Simple_repeat 2 32 0 6 878 1269 191 24 72 chr3 38408472 38408625 -121191158 - MT2B LTR ERVL -66 535 320 6 878 3059 29 0 0 chr3 38408625 38408971 -121190812 + ORR1A0 LTR MaLR 1 346 0 6 878 1269 235 61 79 chr3 38408971 38409279 -121190504 - MT2B LTR ERVL -199 402 1 6 878 318 179 0 0 chr3 38409279 38409335 -121190448 - MERVL_2A-int LTR ERVL 0 5761 5706 6 878 272 209 42 52 chr3 38409335 38409431 -121190352 - ORR1A3-int LTR MaLR -1324 639 545 6 878 3377 169 76 15 chr3 38409454 38409718 -121190065 - MERVL_2A-int LTR ERVL -82 5679 5235 6 878 243 0 0 0 chr3 38409718 38409745 -121190038 + (TA)n Simple_repeat Simple_repeat 1 27 0 6 878 12321 166 63 5 chr3 38409745 38412797 -121186986 - MERVL_2A-int LTR ERVL -405 5356 1965 6 878 1870 155 52 44 chr3 38412802 38413166 -121186617 + ORR1B2 LTR MaLR 1 367 0 6 878 521 308 43 30 chr3 38413222 38413453 -121186330 - MER2 DNA MER2_type -25 320 87 6 878 556 218 0 16 chr3 38413460 38413586 -121186197 - ORR1E LTR MaLR -221 138 15 6 878 1861 205 129 20 chr3 38413870 38413952 -121185831 - RLTR20A LTR ERVK 0 541 455 6 878 504 0 0 0 chr3 38413952 38414008 -121185775 + (CA)n Simple_repeat Simple_repeat 1 56 0 6 878 1861 205 129 20 chr3 38414008 38414413 -121185370 - RLTR20A LTR ERVK -87 454 3 6 878 1024 206 173 102 chr3 38416283 38416393 -121183390 - MT2A LTR ERVL 0 533 462 6 878 757 47 9 9 chr3 38416393 38416500 -121183283 + (TAGA)n Simple_repeat Simple_repeat 2 108 0 6 878 1024 206 173 102 chr3 38416500 38416777 -121183006 - MT2A LTR ERVL -72 461 114 6 878 1608 179 92 57 chr3 38416777 38417145 -121182638 + ORR1C2 LTR MaLR 4 384 0 6 878 1024 206 173 102 chr3 38417145 38417177 -121182606 - MT2A LTR ERVL -420 113 83 6 878 2094 213 91 13 chr3 38417187 38417645 -121182138 + Lx6 LINE L1 6778 7536 -160 6 878 527 0 16 0 chr3 38417645 38417708 -121182075 + (TTATA)n Simple_repeat Simple_repeat 2 65 0 6 878 1017 181 205 11 chr3 38417708 38417852 -121181931 + Lx6 LINE L1 7537 7694 -2 6 878 476 209 8 94 chr3 38417865 38417992 -121181791 - MT2A LTR ERVL -417 116 1 6 878 1801 157 102 3 chr3 38417992 38418363 -121181420 - MERVL_2A-int LTR ERVL 0 5761 5354 6 878 1943 169 49 20 chr3 38418354 38418704 -121181079 - MERVL_2A-int LTR ERVL -603 5158 4799 6 878 1452 247 108 15 chr3 38418704 38419168 -121180615 - RMER20A LTR ERVK 0 516 10 6 878 3125 142 86 4 chr3 38419174 38419675 -121180108 - MERVL_2A-int LTR ERVL -953 4808 4267 6 878 1001 200 60 24 chr3 38419675 38419924 -121179859 - MERVL_2A-int LTR ERVL -1552 4209 3815 6 878 494 129 12 0 chr3 38421656 38421741 -121178042 + (TGGA)n Simple_repeat Simple_repeat 1 86 0 6 878 914 214 25 5 chr3 38422208 38422410 -121177373 - B3 SINE B2 0 216 11 6 878 22 0 0 0 chr3 38423171 38423193 -121176590 + AT_rich Low_complexity Low_complexity 1 22 0 6 878 451 282 0 8 chr3 38424430 38424792 -121174991 + CT-rich Low_complexity Low_complexity 1 358 0 6 878 301 260 64 46 chr3 38425307 38425416 -121174367 - Lx8 LINE L1 -769 6704 6594 6 878 1215 249 92 27 chr3 38425402 38425770 -121174013 + Lx8 LINE L1 6959 7350 -123 6 878 1248 270 13 43 chr3 38426806 38427197 -121172586 + MTEa LTR MaLR 1 379 0 6 878 2052 155 13 60 chr3 38427875 38428260 -121171523 + ORR1B2 LTR MaLR 1 367 0 6 878 698 236 139 14 chr3 38428978 38429193 -121170590 - ORR1D2 LTR MaLR -127 243 2 6 878 216 256 24 12 chr3 38429386 38429469 -121170314 + (TA)n Simple_repeat Simple_repeat 2 85 0 6 878 3259 164 128 73 chr3 38430053 38430892 -121168891 - RLTR13D2 LTR ERVK 0 1023 127 6 878 370 285 5 43 chr3 38431479 38431666 -121168117 + (CA)n Simple_repeat Simple_repeat 1 180 0 6 878 28 0 0 0 chr3 38431708 38431736 -121168047 + AT_rich Low_complexity Low_complexity 1 28 0 6 878 809 20 0 10 chr3 38432188 38432288 -121167495 + (CATA)n Simple_repeat Simple_repeat 4 102 0 6 878 182 33 67 0 chr3 38432292 38432322 -121167461 + (CAGAGA)n Simple_repeat Simple_repeat 1 32 0 6 878 21 36 0 0 chr3 38434310 38434338 -121165445 + AT_rich Low_complexity Low_complexity 1 28 0 6 878 1154 163 45 31 chr3 38435265 38435487 -121164296 - URR1B DNA MER1_type 0 225 1 6 878 4319 40 2 2 chr3 38435884 38436387 -121163396 - RLTR1C LTR ERV1 0 503 1 6 878 439 338 102 27 chr3 38436627 38436852 -121162931 + LTR53 LTR ERVL 59 300 -219 6 878 421 309 0 16 chr3 38437873 38437998 -121161785 - B4 SINE B4 -74 218 96 6 878 300 111 0 0 chr3 38438006 38438051 -121161732 + (TTTG)n Simple_repeat Simple_repeat 1 45 0 6 878 250 306 0 45 chr3 38438051 38438140 -121161643 - B4 SINE B4 -207 85 1 6 878 621 0 0 0 chr3 38438437 38438506 -121161277 + (TC)n Simple_repeat Simple_repeat 2 70 0 6 878 1816 162 116 31 chr3 38439406 38439468 -121160315 - MTC LTR MaLR 0 421 367 6 878 1978 174 30 30 chr3 38439468 38439835 -121159948 + ORR1B2 LTR MaLR 1 367 0 6 878 1816 162 116 31 chr3 38439835 38440160 -121159623 - MTC LTR MaLR -55 366 1 6 878 555 250 121 0 chr3 38442811 38442951 -121156832 + RSINE1 SINE B4 3 159 -6 6 878 576 95 0 0 chr3 38443085 38443169 -121156614 + (GGAA)n Simple_repeat Simple_repeat 4 87 0 6 878 388 305 12 67 chr3 38444176 38444341 -121155442 + RSINE1 SINE B4 3 158 -7 6 878 384 103 0 0 chr3 38444347 38444405 -121155378 + (CA)n Simple_repeat Simple_repeat 1 58 0 6 878 1112 244 25 25 chr3 38444464 38444746 -121155037 - B4 SINE B4 -6 286 5 6 878 348 64 0 0 chr3 38445852 38445899 -121153884 + (TG)n Simple_repeat Simple_repeat 2 48 0 6 878 331 286 121 45 chr3 38445900 38446032 -121153751 - RSINE1 SINE B4 -21 144 3 6 878 564 231 80 94 chr3 38446411 38446612 -121153171 + B3A SINE B2 1 198 0 6 878 822 146 50 6 chr3 38448063 38448222 -121151561 - MTC LTR MaLR 0 421 256 6 878 1346 163 11 60 chr3 38448298 38448579 -121151204 - MTC LTR MaLR -154 267 1 6 878 670 244 11 16 chr3 38448678 38448865 -121150918 - B3A SINE B2 -3 213 27 6 878 757 214 0 21 chr3 38448892 38449035 -121150748 - B1_Mur3 SINE Alu -7 142 3 6 878 1774 152 118 70 chr3 38449098 38449472 -121150311 + ORR1B1 LTR MaLR 3 394 0 6 878 225 0 0 0 chr3 38449866 38449891 -121149892 + (TG)n Simple_repeat Simple_repeat 2 26 0 6 878 265 268 129 41 chr3 38450830 38450842 -121148941 + B2_Mm2 SINE B2 4 39 -156 6 878 633 167 17 9 chr3 38450842 38450957 -121148826 + RSINE1 SINE B4 15 130 -35 6 878 265 268 129 41 chr3 38450957 38451001 -121148782 + B2_Mm2 SINE B2 40 189 -6 6 878 34 24 0 0 chr3 38451207 38451248 -121148535 + AT_rich Low_complexity Low_complexity 1 41 0 6 878 1833 151 31 3 chr3 38451289 38451607 -121148176 + ORR1B2 LTR MaLR 30 356 -11 6 878 1083 282 43 6 chr3 38451719 38452068 -121147715 - Lx8 LINE L1 -181 7292 6931 6 878 261 0 0 0 chr3 38452308 38452337 -121147446 + (CAA)n Simple_repeat Simple_repeat 2 30 0 6 878 336 288 43 50 chr3 38454118 38454257 -121145526 + ID_B1 SINE B4 78 215 -9 6 878 489 138 0 0 chr3 38454258 38454338 -121145445 + (CAAT)n Simple_repeat Simple_repeat 4 83 0 6 878 1463 225 61 48 chr3 38455386 38455782 -121144001 - MTD LTR MaLR 0 419 19 6 878 429 20 0 0 chr3 38455782 38455832 -121143951 + (TAAA)n Simple_repeat Simple_repeat 3 52 0 6 878 692 276 31 117 chr3 38456514 38456805 -121142978 + MTE2a LTR MaLR 1 266 -113 6 878 737 22 0 11 chr3 38456805 38456897 -121142886 + (TCCC)n Simple_repeat Simple_repeat 2 92 0 6 878 299 212 15 0 chr3 38457785 38457851 -121141932 + MTE2a LTR MaLR 313 379 0 6 878 515 153 0 10 chr3 38459144 38459243 -121140540 + CT-rich Low_complexity Low_complexity 3 100 0 7 878 2184 210 16 100 chr3 38459247 38459790 -121139993 + MT2A LTR ERVL 1 493 -40 7 878 868 43 8 8 chr3 38459790 38459908 -121139875 + (TAGA)n Simple_repeat Simple_repeat 4 121 0 7 878 2184 210 16 100 chr3 38459908 38459946 -121139837 + MT2A LTR ERVL 494 533 0 7 878 573 305 99 41 chr3 38460457 38460700 -121139083 + MTD LTR MaLR 1 257 -162 7 878 25 51 0 0 chr3 38461516 38461555 -121138228 + AT_rich Low_complexity Low_complexity 1 39 0 7 878 231 88 0 0 chr3 38461623 38461657 -121138126 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 7 878 1984 203 7 17 chr3 38461832 38462248 -121137535 - MTC LTR MaLR -1 420 9 7 878 297 0 0 0 chr3 38462895 38462928 -121136855 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 7 878 315 0 0 0 chr3 38463098 38463133 -121136650 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 7 878 351 0 0 0 chr3 38463182 38463221 -121136562 + (TC)n Simple_repeat Simple_repeat 2 40 0 7 878 621 0 0 0 chr3 38463221 38463289 -121136494 + (TG)n Simple_repeat Simple_repeat 2 70 0 7 878 549 0 0 0 chr3 38464296 38464357 -121135426 + (TAAA)n Simple_repeat Simple_repeat 2 62 0 7 878 294 273 84 32 chr3 38464360 38464515 -121135268 + RSINE1 SINE B4 3 165 0 7 878 344 236 0 9 chr3 38464516 38464627 -121135156 + (CA)n Simple_repeat Simple_repeat 2 111 0 7 878 23 0 0 0 chr3 38464632 38464655 -121135128 + AT_rich Low_complexity Low_complexity 1 23 0 7 878 294 314 160 9 chr3 38464731 38464956 -121134827 - MER34A1 LTR ERV1 -71 516 258 7 878 1569 35 5 0 chr3 38465056 38465257 -121134526 + ORR1A1 LTR MaLR 145 346 0 7 878 413 115 0 13 chr3 38465329 38465408 -121134375 + (TG)n Simple_repeat Simple_repeat 1 78 0 7 878 279 0 0 0 chr3 38467371 38467402 -121132381 + (TG)n Simple_repeat Simple_repeat 2 32 0 7 878 803 247 62 55 chr3 38468632 38468941 -121130842 - RMER5 LTR ERV1 -22 512 202 7 878 1161 69 0 0 chr3 38468942 38469087 -121130696 - B1_Mm SINE Alu -2 145 1 7 878 862 208 91 0 chr3 38469146 38469343 -121130440 - B3 SINE B2 0 216 2 7 878 23 0 0 0 chr3 38469343 38469366 -121130417 + AT_rich Low_complexity Low_complexity 1 23 0 7 878 274 289 0 12 chr3 38469366 38469450 -121130333 + (TG)n Simple_repeat Simple_repeat 1 83 0 7 878 538 305 23 6 chr3 38469452 38469627 -121130156 - B4A SINE B4 -2 290 113 7 878 372 323 174 8 chr3 38469697 38469962 -121129821 - MTE-int LTR MaLR -1257 323 15 7 878 2230 176 5 0 chr3 38470048 38470428 -121129355 - RLTR14 LTR ERV1 0 382 1 7 878 366 281 45 45 chr3 38470527 38470706 -121129077 - ORR1E LTR MaLR -173 186 8 7 878 364 258 150 0 chr3 38470770 38470890 -121128893 + B3A SINE B2 13 150 -48 7 878 315 0 0 0 chr3 38470895 38470930 -121128853 + (TC)n Simple_repeat Simple_repeat 1 35 0 7 878 294 115 0 0 chr3 38470930 38470981 -121128802 + (CA)n Simple_repeat Simple_repeat 1 52 0 7 878 201 74 0 0 chr3 38472310 38472337 -121127446 + (A)n Simple_repeat Simple_repeat 1 27 0 7 878 327 169 0 0 chr3 38472437 38472508 -121127275 + (TG)n Simple_repeat Simple_repeat 2 72 0 7 878 228 256 200 0 chr3 38472636 38472726 -121127057 - L1M5 LINE L1 -395 5799 5692 7 878 363 276 151 128 chr3 38473214 38473946 -121125837 - L1M5 LINE L1 -1169 4971 4125 7 878 2619 118 29 0 chr3 38473946 38474329 -121125454 - ORR1B1 LTR MaLR 0 394 1 7 878 370 276 151 128 chr3 38474329 38475096 -121124687 - L1M5 LINE L1 -2016 4124 3437 7 878 278 219 110 0 chr3 38475095 38475177 -121124606 - L1M5 LINE L1 -2608 3535 3445 7 878 906 262 21 97 chr3 38475286 38475666 -121124117 + ORR1E LTR MaLR 3 353 -6 7 878 42 20 0 0 chr3 38476272 38476321 -121123462 + AT_rich Low_complexity Low_complexity 1 49 0 7 878 21 0 0 0 chr3 38476429 38476450 -121123333 + AT_rich Low_complexity Low_complexity 1 21 0 7 878 787 281 79 36 chr3 38478291 38478571 -121121212 + B4A SINE B4 1 292 0 7 878 24 32 0 0 chr3 38478632 38478663 -121121120 + AT_rich Low_complexity Low_complexity 1 31 0 7 878 1384 95 5 0 chr3 38479092 38479281 -121120502 - B2_Mm2 SINE B2 -5 190 1 7 878 324 252 91 0 chr3 38479286 38479385 -121120398 - PB1D9 SINE Alu -2 118 11 7 878 348 268 87 52 chr3 38479587 38479875 -121119908 - L1MD LINE L1 -2734 3412 3122 7 878 509 340 13 13 chr3 38479912 38479936 -121119847 - RSINE1 SINE B4 0 165 142 7 878 312 27 0 0 chr3 38479936 38479973 -121119810 + (TG)n Simple_repeat Simple_repeat 2 38 0 7 878 509 340 13 13 chr3 38479973 38480106 -121119677 - RSINE1 SINE B4 -24 141 8 7 878 7783 128 15 2 chr3 38480935 38482136 -121117647 - Lx2 LINE L1 0 6997 5782 7 878 466 42 99 0 chr3 38482147 38482218 -121117565 - L1Md_F3 LINE L1 -1 6583 6506 7 878 2204 115 0 0 chr3 38482218 38482523 -121117260 - L1_Mm LINE L1 -87 5796 5492 7 878 818 290 41 60 chr3 38482521 38482837 -121116946 - Lx8 LINE L1 -218 7255 6946 7 878 201 39 0 0 chr3 38483002 38483028 -121116755 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 7 878 27 0 0 0 chr3 38485004 38485031 -121114752 + AT_rich Low_complexity Low_complexity 1 27 0 7 878 285 29 0 0 chr3 38485044 38485078 -121114705 + (CA)n Simple_repeat Simple_repeat 2 35 0 7 878 575 196 7 0 chr3 38485558 38485701 -121114082 + (TG)n Simple_repeat Simple_repeat 2 145 0 7 878 289 275 165 0 chr3 38485710 38485801 -121113982 - B4 SINE B4 -102 190 85 7 878 3624 179 16 52 chr3 38485808 38486629 -121113154 + Lx6 LINE L1 5118 5909 -1551 7 878 1676 183 57 3 chr3 38486631 38486949 -121112834 - RLTR19 LTR ERVK 0 499 165 7 878 1068 82 0 0 chr3 38486951 38487098 -121112685 + B1_Mus1 SINE Alu 2 148 0 7 878 1023 131 34 22 chr3 38487117 38487296 -121112487 - RLTR19 LTR ERVK -318 181 1 7 878 3139 225 20 17 chr3 38487301 38487994 -121111789 + Lx6 LINE L1 5913 6607 -853 7 878 3157 245 47 73 chr3 38488506 38489386 -121110397 + Lx6 LINE L1 6603 7459 -1 7 878 306 0 0 0 chr3 38489499 38489533 -121110250 + (TG)n Simple_repeat Simple_repeat 2 35 0 7 878 892 260 123 18 chr3 38489882 38490239 -121109544 - MTE2b LTR MaLR -22 397 27 7 878 600 197 8 0 chr3 38490949 38491066 -121108717 - B3 SINE B2 -36 180 63 7 878 235 262 189 8 chr3 38491916 38492043 -121107740 + LTR16A LTR ERVL 243 392 -59 7 878 216 330 11 11 chr3 38492377 38492466 -121107317 + CT-rich Low_complexity Low_complexity 2 90 0 7 878 817 199 75 15 chr3 38493398 38493597 -121106186 - ORR1D1 LTR MaLR 0 384 174 7 878 836 98 17 22 chr3 38493606 38493784 -121105999 + (CAGAGA)n Simple_repeat Simple_repeat 2 178 0 7 878 938 112 6 0 chr3 38493785 38493963 -121105820 + (GA)n Simple_repeat Simple_repeat 2 180 0 7 878 852 156 13 7 chr3 38493982 38494137 -121105646 - ORR1D1 LTR MaLR -218 156 1 7 878 309 239 0 0 chr3 38494778 38494895 -121104888 + (TG)n Simple_repeat Simple_repeat 2 118 0 7 878 1553 265 78 27 chr3 38495059 38495218 -121104565 - Lx5 LINE L1 -606 6444 6378 7 878 1809 202 46 37 chr3 38495218 38495655 -121104128 + BGLII_B LTR ERVK 1 441 0 7 878 1553 253 121 23 chr3 38495655 38496063 -121103720 - Lx5 LINE L1 -673 6377 5917 7 878 1913 309 21 20 chr3 38496086 38496705 -121103078 + Lx5 LINE L1 6455 7050 0 7 878 13604 117 50 49 chr3 38496716 38499732 -121100051 + L1_Mur2 LINE L1 540 3557 -2320 7 878 2038 45 0 8 chr3 38499732 38500000 -121099783 - RLTR1C LTR ERV1 0 503 238 7 878 1809 55 0 0 chr3 38500000 38500237 -121099546 - RLTR1C LTR ERV1 -266 237 1 1 878 7054 125 8 16 chr3 38500237 38501383 -121098400 + L1_Mur2 LINE L1 3554 4690 -1187 2 878 462 96 14 0 chr3 38501602 38501675 -121098108 + L1_Mur2 LINE L1 5256 5329 -548 2 878 225 0 0 0 chr3 38501675 38501700 -121098083 + (T)n Simple_repeat Simple_repeat 1 25 0 3 878 258 239 55 33 chr3 38501704 38501795 -121097988 - RMER5 LTR ERV1 -30 504 412 4 878 5322 77 4 14 chr3 38501806 38502518 -121097265 - L1Md_F2 LINE L1 -11 6571 5867 5 878 16396 108 20 25 chr3 38502518 38505710 -121094073 - L1Md_F LINE L1 -2497 3386 193 6 878 9538 113 23 10 chr3 38505709 38507200 -121092583 + Lx4A LINE L1 5316 6838 -220 7 878 4709 123 45 3 chr3 38507200 38507907 -121091876 - RMER19A LTR ERVK 0 737 1 8 878 9538 114 27 17 chr3 38507907 38508118 -121091665 + Lx4A LINE L1 6839 7047 -11 7 878 180 0 0 0 chr3 38508704 38508724 -121091059 + (T)n Simple_repeat Simple_repeat 1 20 0 9 878 459 0 0 0 chr3 38510090 38510141 -121089642 + (GA)n Simple_repeat Simple_repeat 1 51 0 1 878 4894 116 105 39 chr3 38510750 38511195 -121088588 - RMER17A2 LTR ERVK 0 906 482 1 878 828 89 0 0 chr3 38511195 38511318 -121088465 + (GA)n Simple_repeat Simple_repeat 2 124 0 1 878 4894 116 105 39 chr3 38511318 38511722 -121088061 - RMER17A2 LTR ERVK -425 481 3 1 878 387 0 0 0 chr3 38512004 38512047 -121087736 + (TG)n Simple_repeat Simple_repeat 1 43 0 1 878 292 175 48 0 chr3 38512100 38512163 -121087620 - B3A SINE B2 -130 68 3 1 878 622 273 54 0 chr3 38512711 38512916 -121086867 + B3 SINE B2 1 216 0 1 878 755 221 100 1 chr3 38513452 38513635 -121086148 - B3 SINE B2 -5 211 9 1 878 835 305 85 14 chr3 38514186 38514539 -121085244 + MTE2b LTR MaLR 2 379 0 1 878 296 254 14 0 chr3 38514554 38514625 -121085158 - PB1D10 SINE Alu -42 75 4 1 878 465 208 23 28 chr3 38514926 38515045 -121084738 - RLTR20D LTR ERVK 0 568 410 1 878 309 51 0 0 chr3 38515045 38515084 -121084699 + (CA)n Simple_repeat Simple_repeat 2 40 0 2 878 463 274 29 98 chr3 38515084 38515138 -121084645 - RLTR20D LTR ERVK -108 460 407 1 878 673 199 74 22 chr3 38515127 38515364 -121084419 - RLTR20D LTR ERVK -285 283 11 1 878 982 250 21 12 chr3 38515974 38516217 -121083566 + MTEa LTR MaLR 1 245 -134 2 878 468 274 0 0 chr3 38516652 38516747 -121083036 + RSINE1 SINE B4 2 96 -69 2 878 244 208 0 0 chr3 38517325 38517378 -121082405 + (CAGA)n Simple_repeat Simple_repeat 4 56 0 2 878 674 307 104 57 chr3 38517823 38518189 -121081594 + MLT1B LTR MaLR 8 390 0 2 878 342 0 0 0 chr3 38518668 38518706 -121081077 + (CA)n Simple_repeat Simple_repeat 1 38 0 2 878 270 0 0 0 chr3 38518706 38518735 -121081048 + (GA)n Simple_repeat Simple_repeat 2 31 0 2 878 510 236 97 191 chr3 38519388 38519781 -121080002 - ORR1E LTR MaLR 0 359 4 2 878 7244 50 0 15 chr3 38520861 38521752 -121078031 - L1_Mus1 LINE L1 0 6567 5690 2 878 5585 90 2 20 chr3 38521747 38522533 -121077250 + L1_Mus1 LINE L1 4888 5659 -224 2 878 21 0 0 0 chr3 38522555 38522576 -121077207 + AT_rich Low_complexity Low_complexity 1 21 0 2 878 627 14 0 0 chr3 38523260 38523332 -121076451 + (TC)n Simple_repeat Simple_repeat 1 72 0 3 878 283 145 48 12 chr3 38525597 38525681 -121074102 + (TA)n Simple_repeat Simple_repeat 2 88 0 3 878 39214 7 0 0 chr3 38525772 38530916 -121068867 + L1Md_A LINE L1 443 5586 -297 3 878 9132 6 0 0 chr3 38530916 38531912 -121067871 + L1Md_A LINE L1 5587 6582 0 3 878 427 261 0 22 chr3 38533663 38533847 -121065936 + CT-rich Low_complexity Low_complexity 1 180 0 3 878 613 194 17 11 chr3 38533874 38534051 -121065732 + CT-rich Low_complexity Low_complexity 1 178 0 3 878 333 0 0 0 chr3 38534051 38534088 -121065695 + (TG)n Simple_repeat Simple_repeat 1 37 0 3 878 300 70 0 0 chr3 38534088 38534131 -121065652 + (GA)n Simple_repeat Simple_repeat 2 44 0 3 878 297 151 0 86 chr3 38534140 38534198 -121065585 - RSINE1 SINE B4 -66 99 47 3 878 822 21 0 0 chr3 38534981 38535077 -121064706 + (TTTC)n Simple_repeat Simple_repeat 2 97 0 3 879 252 0 0 0 chr3 38536717 38536745 -121063038 + (TG)n Simple_repeat Simple_repeat 1 28 0 3 879 373 258 11 0 chr3 38536806 38536899 -121062884 - B4A SINE B4 -66 226 133 3 879 421 330 17 17 chr3 38537535 38537655 -121062128 + RSINE1 SINE B4 45 164 -1 4 879 340 267 10 19 chr3 38537658 38537761 -121062022 + (CATATA)n Simple_repeat Simple_repeat 2 103 0 4 879 445 185 28 17 chr3 38537766 38537942 -121061841 + (CA)n Simple_repeat Simple_repeat 2 179 0 4 879 730 256 95 14 chr3 38538338 38538548 -121061235 + B4 SINE B4 8 234 -58 4 879 2862 120 38 7 chr3 38539195 38539638 -121060145 - RMER6B LTR ERVK 0 461 5 4 879 710 265 24 19 chr3 38540230 38540438 -121059345 + ID_B1 SINE B4 3 211 -13 4 879 216 0 0 0 chr3 38540456 38540480 -121059303 + (TAGA)n Simple_repeat Simple_repeat 3 26 0 4 879 23 0 0 0 chr3 38540624 38540647 -121059136 + AT_rich Low_complexity Low_complexity 1 23 0 4 879 1672 185 140 65 chr3 38541496 38542023 -121057760 - RMER4B LTR ERVK -6 579 13 4 879 1832 149 54 46 chr3 38542326 38542698 -121057085 - ORR1C1 LTR MaLR -3 375 1 4 879 2407 108 56 3 chr3 38543502 38543892 -121055891 + IAPLTR2a LTR ERVK 1 411 0 5 879 1919 148 0 56 chr3 38545060 38545419 -121054364 - Lx LINE L1 0 6654 6316 5 879 651 217 7 28 chr3 38545614 38545756 -121054027 - B1_Mur2 SINE Alu -9 140 2 5 879 1019 88 7 0 chr3 38546202 38546350 -121053433 + (TTTC)n Simple_repeat Simple_repeat 1 149 0 5 879 251 93 0 23 chr3 38546350 38546394 -121053389 + (TCCC)n Simple_repeat Simple_repeat 3 45 0 5 879 1180 55 6 6 chr3 38546396 38546562 -121053221 + (TTCC)n Simple_repeat Simple_repeat 2 167 0 5 879 22 35 0 0 chr3 38546592 38546621 -121053162 + AT_rich Low_complexity Low_complexity 1 29 0 5 879 259 301 24 0 chr3 38547579 38547662 -121052121 + ORR1E LTR MaLR 1 85 -274 5 879 1096 219 40 47 chr3 38547695 38547973 -121051810 - Lx8 LINE L1 -899 6574 6299 5 879 1611 191 19 79 chr3 38547996 38548313 -121051470 - RLTR31_Mur LTR ERVK -147 406 109 5 879 540 0 0 0 chr3 38548313 38548373 -121051410 + (TC)n Simple_repeat Simple_repeat 2 61 0 6 879 1611 191 19 79 chr3 38548373 38548486 -121051297 - RLTR31_Mur LTR ERVK -445 108 2 5 879 349 275 135 31 chr3 38549274 38549554 -121050229 + MLT1B LTR MaLR 68 390 0 6 879 522 0 0 0 chr3 38550547 38550605 -121049178 + (TA)n Simple_repeat Simple_repeat 1 58 0 6 879 194 382 15 37 chr3 38551044 38551180 -121048603 - MIR SINE MIR -38 224 92 6 879 3521 18 5 0 chr3 38551229 38551623 -121048160 - MTA_Mm LTR MaLR 0 396 1 6 879 910 114 14 0 chr3 38553440 38553580 -121046203 - B1_Mus1 SINE Alu 0 148 7 6 879 912 235 156 16 chr3 38553848 38554134 -121045649 - ORR1D2 LTR MaLR -23 347 1 6 879 380 37 19 0 chr3 38554182 38554236 -121045547 + (TTTA)n Simple_repeat Simple_repeat 3 57 0 6 879 1200 29 0 0 chr3 38554238 38554378 -121045405 - B1_Mus2 SINE Alu -6 141 2 6 879 426 247 301 20 chr3 38554383 38554536 -121045247 - B3A SINE B2 -1 197 2 6 879 503 279 0 0 chr3 38555229 38555340 -121044443 + PB1D10 SINE Alu 7 117 0 7 879 634 215 62 41 chr3 38556757 38556951 -121042832 - B3A SINE B2 0 198 1 7 879 632 273 184 0 chr3 38557503 38557770 -121042013 + MTE2b LTR MaLR 56 371 -8 7 879 574 285 135 28 chr3 38557810 38558092 -121041691 - Lx8 LINE L1 -1 7472 7161 7 879 8505 27 0 9 chr3 38558118 38559373 -121040410 - L1Md_A LINE L1 0 6582 5344 7 879 238 125 50 0 chr3 38559394 38559434 -121040349 - Lx8 LINE L1 -354 7119 7067 7 879 675 177 0 9 chr3 38559452 38559566 -121040217 - PB1D9 SINE Alu -6 114 2 7 879 510 226 19 0 chr3 38560195 38560301 -121039482 + B1_Mur1 SINE Alu 3 110 -39 7 879 501 17 0 0 chr3 38560308 38560366 -121039417 + (GGAA)n Simple_repeat Simple_repeat 3 60 0 7 879 1010 143 6 0 chr3 38560368 38560543 -121039240 + (GAAA)n Simple_repeat Simple_repeat 3 178 0 7 879 714 271 63 12 chr3 38560561 38560815 -121038968 + B4 SINE B4 3 269 -23 7 879 504 0 0 0 chr3 38561026 38561082 -121038701 + (TG)n Simple_repeat Simple_repeat 2 57 0 8 879 31 26 0 0 chr3 38561962 38562000 -121037783 + AT_rich Low_complexity Low_complexity 1 38 0 8 879 721 223 38 0 chr3 38562093 38562250 -121037533 - B3A SINE B2 -35 163 1 8 879 555 229 130 7 chr3 38563948 38564102 -121035681 - B3A SINE B2 -18 180 8 8 879 919 257 69 18 chr3 38565590 38565867 -121033916 - Lx8 LINE L1 -791 6682 6392 8 879 1815 317 57 16 chr3 38565871 38566569 -121033214 + Lx8 LINE L1 6719 7445 -28 8 879 591 244 12 53 chr3 38566627 38566796 -121032987 - RSINE1 SINE B4 0 165 4 8 879 531 233 64 87 chr3 38567034 38567341 -121032442 + Lx7 LINE L1 5697 6021 -135 8 879 207 0 105 0 chr3 38568812 38568850 -121030933 + (CAAA)n Simple_repeat Simple_repeat 2 43 0 8 879 22 0 0 0 chr3 38569627 38569649 -121030134 + AT_rich Low_complexity Low_complexity 1 22 0 8 879 234 0 0 0 chr3 38569748 38569774 -121030009 + (CA)n Simple_repeat Simple_repeat 1 26 0 8 879 310 93 0 0 chr3 38570952 38570995 -121028788 + HAL1-3A_ME LINE L1 1977 2019 -839 9 879 1593 147 172 67 chr3 38571014 38571444 -121028339 - IAPLTR2_Mm LTR ERVK 0 475 1 9 879 21 0 0 0 chr3 38571769 38571790 -121027993 + AT_rich Low_complexity Low_complexity 1 21 0 9 879 1396 198 155 83 chr3 38571961 38572475 -121027308 - Lx7 LINE L1 -1623 6073 5547 9 879 2766 159 26 65 chr3 38572889 38573460 -121026323 - Lx7 LINE L1 -328 5552 5004 9 879 225 0 0 0 chr3 38573484 38573509 -121026274 + (TTTG)n Simple_repeat Simple_repeat 1 25 0 9 879 9343 147 44 77 chr3 38573518 38574998 -121024785 - Lx7 LINE L1 -2401 3479 2022 9 879 204 40 0 0 chr3 38574998 38575023 -121024760 + (TTTA)n Simple_repeat Simple_repeat 3 27 0 9 879 9343 147 44 77 chr3 38575023 38575704 -121024079 - Lx7 LINE L1 -3859 2021 1390 9 879 248 208 94 0 chr3 38575701 38575754 -121024029 - Lx7 LINE L1 -7368 360 303 9 879 481 317 66 0 chr3 38576170 38576337 -121023446 - MTD LTR MaLR -237 182 5 9 879 361 240 57 16 chr3 38577544 38577667 -121022116 - L1MC5 LINE L1 -827 7134 7007 9 879 207 339 109 8 chr3 38577881 38578009 -121021774 + L2a LINE L2 3286 3426 0 9 879 315 0 0 0 chr3 38578026 38578061 -121021722 + (TC)n Simple_repeat Simple_repeat 2 36 0 9 879 195 210 30 0 chr3 38578061 38578161 -121021622 + (TG)n Simple_repeat Simple_repeat 1 103 0 1 879 666 0 0 0 chr3 38578166 38578240 -121021543 + (CATAT)n Simple_repeat Simple_repeat 3 76 0 1 879 291 252 36 0 chr3 38578260 38578371 -121021412 + (TG)n Simple_repeat Simple_repeat 2 116 0 1 879 486 0 0 0 chr3 38578409 38578463 -121021320 + (TAGA)n Simple_repeat Simple_repeat 2 55 0 1 879 1400 166 260 0 chr3 38578592 38578888 -121020895 - ORR1D1 LTR MaLR -1 373 1 1 879 474 18 0 0 chr3 38579335 38579390 -121020393 + (TC)n Simple_repeat Simple_repeat 2 56 0 1 879 261 0 0 0 chr3 38579390 38579418 -121020365 + (TG)n Simple_repeat Simple_repeat 2 30 0 1 879 406 307 102 0 chr3 38579419 38579546 -121020237 - B1_Mur2 SINE Alu -8 141 2 1 879 844 220 30 35 chr3 38580451 38580649 -121019134 + B3A SINE B2 2 198 0 1 879 361 259 100 112 chr3 38581030 38581439 -121018344 - RMER10A LTR ERVL -27 415 12 1 879 192 40 0 0 chr3 38582650 38582675 -121017108 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 1 879 568 195 98 17 chr3 38584042 38584227 -121015556 - B3 SINE B2 -1 197 2 1 879 325 222 37 12 chr3 38585600 38585682 -121014101 + U6 snRNA snRNA 24 107 0 1 879 214 195 0 0 chr3 38585685 38585726 -121014057 + T-rich Low_complexity Low_complexity 1 41 0 1 879 3699 69 0 0 chr3 38585733 38586197 -121013586 - L1_Mus1 LINE L1 -2 6565 6102 1 879 1858 196 80 14 chr3 38587688 38588101 -121011682 - RLTR12B LTR ERVK 0 528 89 1 879 540 239 82 27 chr3 38588092 38588238 -121011545 - MTE2b LTR MaLR -187 192 39 1 879 289 294 65 0 chr3 38588216 38588308 -121011475 - MTE2b LTR MaLR -281 98 1 1 879 1149 289 105 16 chr3 38588613 38589108 -121010675 + Lx8 LINE L1 6935 7473 0 1 879 476 73 0 0 chr3 38589129 38589197 -121010586 - RLTR12B LTR ERVK -438 90 23 1 879 432 0 0 0 chr3 38589766 38589814 -121009969 + (CA)n Simple_repeat Simple_repeat 2 49 0 1 879 213 94 0 0 chr3 38590312 38590344 -121009439 + (GTTTG)n Simple_repeat Simple_repeat 2 33 0 1 879 357 145 0 0 chr3 38590486 38590548 -121009235 + (TCCCC)n Simple_repeat Simple_repeat 1 62 0 1 879 1003 191 109 71 chr3 38593558 38593880 -121005903 - ORR1D1 LTR MaLR -38 336 3 1 879 570 41 0 0 chr3 38594482 38594555 -121005228 + (TG)n Simple_repeat Simple_repeat 2 74 0 1 879 403 241 97 18 chr3 38594555 38594669 -121005114 - RSINE1 SINE B4 -41 124 2 1 879 246 275 29 0 chr3 38595130 38595199 -121004584 + MIR3 SINE MIR 90 160 -48 1 879 481 291 35 0 chr3 38595887 38596028 -121003755 - ID_B1 SINE B4 0 224 79 1 879 394 255 21 0 chr3 38596335 38596429 -121003354 - B4A SINE B4 -68 224 129 1 879 325 230 48 48 chr3 38596499 38596604 -121003179 - B4A SINE B4 -187 105 1 1 879 741 43 0 0 chr3 38598432 38598525 -121001258 + (CA)n Simple_repeat Simple_repeat 2 94 0 1 879 21 0 0 0 chr3 38598852 38598873 -121000910 + AT_rich Low_complexity Low_complexity 1 21 0 1 879 2508 162 68 8 chr3 38599108 38599605 -121000178 - RLTR11A2 LTR ERVK 0 527 1 1 879 2322 146 11 6 chr3 38599636 38600001 -120999782 - ORR1B2 LTR MaLR 0 367 1 1 879 945 172 80 5 chr3 38600106 38600293 -120999490 + MTC LTR MaLR 213 413 -8 1 879 462 196 0 40 chr3 38600296 38600397 -120999386 + ORR1D1 LTR MaLR 263 359 -15 1 879 314 283 61 0 chr3 38600922 38601021 -120998762 - MER44D DNA MER2_type -594 111 7 1 879 2960 168 9 13 chr3 38602497 38603023 -120996760 + RLTR28 LTR ERVL 1 524 0 1 879 298 156 0 45 chr3 38603326 38603393 -120996390 + RMER17C-int LTR ERVK 3174 3237 -1 1 879 1132 208 87 43 chr3 38603394 38603787 -120995996 + RMER17C LTR ERVK 1 410 0 1 879 209 108 27 0 chr3 38604222 38604259 -120995524 + (TA)n Simple_repeat Simple_repeat 1 38 0 1 879 405 189 0 0 chr3 38604855 38604945 -120994838 + (CA)n Simple_repeat Simple_repeat 2 91 0 1 879 518 114 0 11 chr3 38604948 38605037 -120994746 + (GA)n Simple_repeat Simple_repeat 1 88 0 1 879 350 302 54 31 chr3 38605037 38605167 -120994616 - B1F SINE Alu -12 137 5 1 879 624 223 46 0 chr3 38605053 38605183 -120994600 - ID_B1 SINE B4 -21 203 68 1 879 636 274 76 125 chr3 38605252 38605556 -120994227 + B4A SINE B4 4 292 0 1 879 2175 132 3 6 chr3 38606456 38606784 -120992999 + ORR1A2 LTR MaLR 1 327 0 1 879 583 276 21 0 chr3 38606910 38607055 -120992728 - B3A SINE B2 -24 174 27 1 879 564 305 37 23 chr3 38607934 38608149 -120991634 + B4 SINE B4 6 223 -69 1 879 306 106 0 0 chr3 38608149 38608196 -120991587 + (CAGA)n Simple_repeat Simple_repeat 4 50 0 1 879 477 76 0 0 chr3 38608210 38608276 -120991507 + (CA)n Simple_repeat Simple_repeat 1 66 0 1 879 1889 102 150 6 chr3 38609186 38609520 -120990263 - ORR1B1 LTR MaLR -8 386 5 1 879 1865 157 74 48 chr3 38609521 38609915 -120989868 - ORR1B1-int LTR MaLR 0 1509 1106 1 879 1074 107 0 0 chr3 38610508 38610667 -120989116 + (TTTC)n Simple_repeat Simple_repeat 4 162 0 1 879 483 63 0 0 chr3 38610667 38610730 -120989053 + (TCCC)n Simple_repeat Simple_repeat 1 63 0 1 879 23 0 0 0 chr3 38610731 38610754 -120989029 + AT_rich Low_complexity Low_complexity 1 23 0 1 879 620 26 13 0 chr3 38611352 38611430 -120988353 + (CA)n Simple_repeat Simple_repeat 2 80 0 1 879 431 279 12 42 chr3 38612195 38612360 -120987423 + (TG)n Simple_repeat Simple_repeat 1 160 0 1 879 713 209 12 18 chr3 38612488 38612635 -120987148 + B3A SINE B2 2 136 -59 1 879 681 63 0 0 chr3 38612635 38612730 -120987053 + (CA)n Simple_repeat Simple_repeat 2 96 0 1 879 450 253 41 87 chr3 38612730 38612777 -120987006 + B2_Mm2 SINE B2 137 187 -8 1 879 1032 212 10 5 chr3 38613576 38613780 -120986003 + RLTR19-int LTR ERVK 1131 1335 -4187 1 879 331 206 102 10 chr3 38613835 38613933 -120985850 + MYSERV6-int LTR ERVK 7020 7126 -1833 1 879 1936 250 196 13 chr3 38613952 38614581 -120985202 - RMER1A Other Other -286 744 1 1 879 1058 272 82 16 chr3 38614581 38615154 -120984629 - RMER1A Other Other -558 472 3 1 879 3111 198 71 62 chr3 38615138 38615914 -120983869 + RMER1B Other Other 284 1066 0 1 879 1494 222 79 52 chr3 38616155 38616559 -120983224 - RLTR41 LTR ERV1 -29 417 3 1 879 1258 244 96 82 chr3 38616589 38617223 -120982560 + RLTR19-int LTR ERVK 2183 2825 -3312 1 879 981 233 9 97 chr3 38617243 38617585 -120982198 + RMER17C LTR ERVK 1 312 -98 1 879 1204 270 97 111 chr3 38617904 38618056 -120981727 + RLTR19-int LTR ERVK 3524 3661 -2476 1 879 498 125 0 0 chr3 38618056 38618136 -120981647 + (TA)n Simple_repeat Simple_repeat 1 80 0 1 879 1204 270 97 111 chr3 38618136 38618946 -120980837 + RLTR19-int LTR ERVK 3662 4471 -1666 1 879 319 320 63 24 chr3 38619513 38619718 -120980065 + RLTR6-int LTR ERV1 7304 7516 -262 1 879 25 0 0 0 chr3 38620012 38620037 -120979746 + AT_rich Low_complexity Low_complexity 1 25 0 1 879 185 179 26 0 chr3 38620121 38620160 -120979623 + L3 LINE CR1 1646 1685 -2804 1 879 441 288 40 8 chr3 38620350 38620476 -120979307 - RMER10B LTR ERVL 0 398 269 1 879 2436 196 53 80 chr3 38620788 38621376 -120978407 - RMER15 LTR ERVL -1 574 3 1 879 782 255 0 12 chr3 38621377 38621544 -120978239 - RMER15-int LTR ERVL -25 4974 4810 1 879 1972 226 15 15 chr3 38621589 38621989 -120977794 - RMER15-int LTR ERVL -292 4707 4308 1 879 2328 172 10 18 chr3 38623604 38624001 -120975782 - ORR1B1 LTR MaLR 0 394 1 1 879 240 35 0 0 chr3 38624464 38624493 -120975290 + (CA)n Simple_repeat Simple_repeat 2 30 0 1 879 1045 231 40 0 chr3 38624576 38624801 -120974982 + MTD LTR MaLR 186 419 0 1 879 13410 130 7 7 chr3 38624888 38627019 -120972764 + L1Md_F2 LINE L1 3329 5459 -424 1 879 10960 76 0 1 chr3 38627015 38628452 -120971331 - L1_Mm LINE L1 -2286 3597 2163 1 879 524 50 0 0 chr3 38628437 38628497 -120971286 + L1Md_F2 LINE L1 5527 5586 -297 1 879 8965 34 0 4 chr3 38628498 38629497 -120970286 + L1Md_F2 LINE L1 5588 6582 0 1 879 6903 124 19 8 chr3 38629501 38630686 -120969097 + Lx LINE L1 5453 6650 -4 1 879 1034 281 28 14 chr3 38632088 38632373 -120967410 - B4 SINE B4 -2 290 2 1 879 2800 148 41 0 chr3 38632647 38633087 -120966696 - RMER6B LTR ERVK -3 458 1 1 879 692 194 188 0 chr3 38633092 38633254 -120966529 - B3 SINE B2 -22 194 6 1 879 2073 86 4 0 chr3 38633525 38633803 -120965980 + ORR1A2 LTR MaLR 49 327 0 1 879 704 280 75 12 chr3 38633989 38634199 -120965584 - B3A SINE B2 -1 215 1 1 879 544 338 40 14 chr3 38635002 38635299 -120964484 - L1ME2 LINE L1 -210 5954 5650 1 879 1140 313 26 53 chr3 38635849 38636341 -120963442 + Lx9 LINE L1 6973 7451 -193 1 879 2127 151 29 6 chr3 38636346 38636692 -120963091 - ORR1B2 LTR MaLR 0 367 14 1 879 1008 187 134 24 chr3 38637437 38637727 -120962056 - RLTR15 LTR ERVK -37 322 1 1 879 860 276 139 8 chr3 38638597 38638932 -120960851 + MTE2a LTR MaLR 1 349 -10 1 879 273 345 48 35 chr3 38639572 38639800 -120959983 + L4 LINE RTE 1696 1926 -103 1 879 270 0 0 0 chr3 38640219 38640249 -120959534 + (TC)n Simple_repeat Simple_repeat 1 30 0 1 879 351 0 0 0 chr3 38640249 38640287 -120959496 + (CA)n Simple_repeat Simple_repeat 1 39 0 1 879 31 68 0 0 chr3 38640367 38640426 -120959357 + AT_rich Low_complexity Low_complexity 1 59 0 1 879 370 298 124 16 chr3 38640427 38640621 -120959162 - B3 SINE B2 -1 215 1 1 879 211 189 0 0 chr3 38641683 38641720 -120958063 + B3A SINE B2 1 37 -161 1 879 279 0 0 0 chr3 38641776 38641807 -120957976 + (CA)n Simple_repeat Simple_repeat 1 31 0 1 879 330 287 197 22 chr3 38641837 38642015 -120957768 + ID_B1 SINE B4 4 212 -12 1 879 291 54 0 0 chr3 38642015 38642052 -120957731 + (CAAA)n Simple_repeat Simple_repeat 3 39 0 1 879 475 193 108 50 chr3 38642312 38642432 -120957351 - B1_Mm SINE Alu -4 143 17 1 879 868 173 146 5 chr3 38643328 38643520 -120956263 + URR1A DNA MER1_type 8 226 0 1 879 37697 82 11 20 chr3 38643607 38645787 -120953996 + L1Md_F3 LINE L1 418 2569 -3314 1 879 3146 43 52 0 chr3 38645787 38646156 -120953627 - RLTR10 LTR ERVK -2 388 1 1 879 37697 45 3 4 chr3 38646156 38650189 -120949594 + L1Md_F3 LINE L1 2570 6584 0 1 879 501 289 29 82 chr3 38650450 38650620 -120949163 - RSINE1 SINE B4 -4 161 1 1 879 1215 75 0 0 chr3 38651919 38652065 -120947718 + B1_Mus2 SINE Alu 2 147 0 1 879 726 211 144 33 chr3 38652419 38652450 -120947333 - B3 SINE B2 -13 203 176 2 879 1715 167 82 36 chr3 38652450 38652842 -120946941 + RMER17C LTR ERVK 1 410 0 2 879 726 211 144 33 chr3 38652842 38652991 -120946792 - B3 SINE B2 -41 175 3 2 879 361 217 0 55 chr3 38655086 38655159 -120944624 + B3A SINE B2 1 69 -129 2 879 23 33 0 0 chr3 38655169 38655199 -120944584 + AT_rich Low_complexity Low_complexity 1 30 0 2 879 521 301 47 104 chr3 38655683 38655980 -120943803 - B4 SINE B4 -8 284 5 2 879 2702 131 5 8 chr3 38655986 38656378 -120943405 - ORR1B1 LTR MaLR -3 391 1 2 879 555 152 34 7 chr3 38659501 38659647 -120940136 + GA-rich Low_complexity Low_complexity 3 152 0 2 879 302 0 26 0 chr3 38660946 38660984 -120938799 + (TTTG)n Simple_repeat Simple_repeat 1 39 0 2 109 39191 7 1 1 chr3 38661329 38666711 -120933072 + L1Md_A LINE L1 205 5586 -297 2 880 9570 5 0 0 chr3 38666711 38667707 -120932076 + L1Md_A LINE L1 5587 6582 0 2 880 340 111 0 0 chr3 38667720 38667774 -120932009 + B2_Mm2 SINE B2 2 55 -140 2 880 225 0 0 0 chr3 38667774 38667799 -120931984 + (A)n Simple_repeat Simple_repeat 1 25 0 2 880 1374 239 15 30 chr3 38668162 38668499 -120931284 - ORR1D1 LTR MaLR -42 332 1 2 880 686 198 72 24 chr3 38668610 38668776 -120931007 - Lx8 LINE L1 -1038 6435 6262 2 880 8499 179 45 119 chr3 38668745 38669492 -120930291 - L1VL4 LINE L1 -2369 3508 2999 2 880 4039 90 6 2 chr3 38669492 38670037 -120929746 + L1_Mus3 LINE L1 6089 6635 -3 2 880 8695 163 50 13 chr3 38670037 38672110 -120927673 - L1VL4 LINE L1 -2868 3018 881 2 880 1015 284 47 18 chr3 38673375 38673716 -120926067 + MTEb LTR MaLR 16 366 -13 2 880 431 285 89 24 chr3 38674582 38674751 -120925032 + B3A SINE B2 3 182 -16 2 880 863 249 34 0 chr3 38674846 38675051 -120924732 + ID_B1 SINE B4 8 219 -5 2 880 6188 36 0 1 chr3 38676444 38677171 -120922612 + L1Md_F2 LINE L1 5856 6581 -1 2 880 276 0 0 64 chr3 38677266 38677313 -120922470 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 2 880 1384 260 161 7 chr3 38677757 38678155 -120921628 + MT2A LTR ERVL 3 468 -65 2 880 186 43 0 0 chr3 38678155 38678178 -120921605 + (TG)n Simple_repeat Simple_repeat 2 24 0 2 880 1384 260 161 7 chr3 38678178 38678239 -120921544 + MT2A LTR ERVL 469 532 -1 2 880 744 244 149 48 chr3 38678411 38678700 -120921083 - MTE2b LTR MaLR -2 377 60 2 880 246 32 0 0 chr3 38678891 38678922 -120920861 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 2 880 552 56 0 0 chr3 38679831 38679903 -120919880 + (TC)n Simple_repeat Simple_repeat 2 73 0 2 880 1656 182 118 37 chr3 38680440 38680822 -120918961 + MTC LTR MaLR 1 413 -8 2 880 628 257 0 7 chr3 38681448 38681601 -120918182 - RSINE1 SINE B4 0 165 14 2 880 776 196 48 43 chr3 38681616 38681824 -120917959 - B3 SINE B2 -1 215 7 2 880 366 114 0 0 chr3 38683380 38683450 -120916333 + (TCCA)n Simple_repeat Simple_repeat 3 72 0 2 880 204 190 62 12 chr3 38684027 38684187 -120915596 + (TA)n Simple_repeat Simple_repeat 1 168 0 2 880 1201 273 88 30 chr3 38684361 38684852 -120914931 - L1MC1 LINE L1 0 6333 5815 2 880 476 231 70 94 chr3 38684861 38684929 -120914854 - B3A SINE B2 0 198 143 2 880 192 77 0 0 chr3 38684929 38684955 -120914828 + (CA)n Simple_repeat Simple_repeat 1 26 0 2 880 476 231 70 94 chr3 38684955 38685087 -120914696 - B3A SINE B2 -56 142 3 2 880 252 0 0 0 chr3 38685550 38685578 -120914205 + (GGAA)n Simple_repeat Simple_repeat 4 31 0 2 880 574 259 63 41 chr3 38685674 38685944 -120913839 - RMER15 LTR ERVL -19 556 281 2 880 5820 143 45 23 chr3 38685995 38687065 -120912718 + MYSERV6-int LTR ERVK 6474 7566 -1393 2 880 1451 150 197 8 chr3 38687103 38687459 -120912324 + RMER6A LTR ERVK 334 756 0 2 880 450 195 57 33 chr3 38687459 38687581 -120912202 - RMER15 LTR ERVL -450 125 1 2 880 21 36 0 0 chr3 38688179 38688207 -120911576 + AT_rich Low_complexity Low_complexity 1 28 0 2 880 551 173 42 0 chr3 38688663 38688831 -120910952 + (TCTA)n Simple_repeat Simple_repeat 3 177 0 2 880 23 0 0 0 chr3 38690207 38690230 -120909553 + AT_rich Low_complexity Low_complexity 1 23 0 2 880 479 155 53 12 chr3 38690356 38690526 -120909257 + (TCTA)n Simple_repeat Simple_repeat 3 179 0 2 880 237 309 32 13 chr3 38690556 38690710 -120909073 - L1M LINE L1 -698 5426 5270 2 880 1923 141 10 13 chr3 38691550 38691860 -120907923 + RLTR27 LTR ERVK 1 309 0 2 880 240 379 42 37 chr3 38692775 38692964 -120906819 - LTR40a LTR ERVL -324 195 6 2 880 572 302 40 86 chr3 38693095 38693396 -120906387 + B4A SINE B4 6 292 0 2 880 448 282 0 48 chr3 38693396 38693582 -120906201 + (CA)n Simple_repeat Simple_repeat 1 177 0 2 880 501 257 169 0 chr3 38695203 38695339 -120904444 - B3A SINE B2 -26 172 14 2 880 832 243 24 19 chr3 38695887 38696097 -120903686 + ORR1E LTR MaLR 39 249 -110 2 880 262 284 126 10 chr3 38696656 38696759 -120903024 + LTR16C LTR ERVL 374 488 -1 2 880 38 39 0 0 chr3 38696813 38696865 -120902918 + AT_rich Low_complexity Low_complexity 1 52 0 2 880 2009 179 27 17 chr3 38696953 38697356 -120902427 - MTB_Mm LTR MaLR 0 407 1 2 880 963 262 101 18 chr3 38698834 38699160 -120900623 - MTEb LTR MaLR 0 379 27 2 880 397 194 0 0 chr3 38699517 38699602 -120900181 - ID2 SINE ID -58 94 10 2 880 346 309 9 18 chr3 38700084 38700196 -120899587 + MTEa LTR MaLR 21 131 -248 2 880 878 168 0 14 chr3 38701131 38701354 -120898429 + GA-rich Low_complexity Low_complexity 1 219 0 2 880 601 301 14 73 chr3 38701895 38702114 -120897669 + MTE-int LTR MaLR 248 453 -1127 2 880 1419 190 43 37 chr3 38702199 38702274 -120897509 - RLTR41 LTR ERV1 0 446 378 2 880 2866 33 62 0 chr3 38702274 38702610 -120897173 + IAPEY2_LTR LTR ERVK 1 357 0 2 880 1419 190 43 37 chr3 38702610 38702834 -120896949 - RLTR41 LTR ERV1 -69 377 145 2 880 845 138 35 75 chr3 38702870 38703043 -120896740 - RLTR41 LTR ERV1 -280 166 1 2 880 23 33 0 0 chr3 38703418 38703448 -120896335 + AT_rich Low_complexity Low_complexity 1 30 0 2 880 684 0 0 0 chr3 38703665 38703741 -120896042 + (TTCTC)n Simple_repeat Simple_repeat 4 79 0 2 880 443 215 87 106 chr3 38704383 38704591 -120895192 + ORR1E LTR MaLR 18 221 -138 2 880 499 270 187 0 chr3 38704788 38705029 -120894754 + Lx9 LINE L1 7339 7624 -20 2 880 493 290 45 0 chr3 38707262 38707417 -120892366 - RSINE1 SINE B4 -2 163 2 2 880 666 0 0 0 chr3 38707510 38707584 -120892199 + (GA)n Simple_repeat Simple_repeat 2 75 0 2 880 1192 228 10 20 chr3 38707853 38708153 -120891630 + MTE2b LTR MaLR 70 366 -13 2 880 183 80 0 0 chr3 38708381 38708406 -120891377 + (CAA)n Simple_repeat Simple_repeat 3 27 0 2 880 782 30 20 0 chr3 38708445 38708545 -120891238 + (TAGA)n Simple_repeat Simple_repeat 2 103 0 2 880 321 279 63 99 chr3 38708553 38708776 -120891007 + B3 SINE B2 2 216 0 2 880 294 242 29 108 chr3 38708924 38709026 -120890757 + MTEa LTR MaLR 220 313 -66 2 880 658 268 126 55 chr3 38710176 38710524 -120889259 + RMER13A LTR ERVK 81 453 -407 2 880 441 0 0 0 chr3 38711236 38711285 -120888498 + (CA)n Simple_repeat Simple_repeat 2 50 0 2 880 387 274 25 76 chr3 38711861 38712019 -120887764 + ID_B1 SINE B4 73 222 -2 2 880 281 330 43 0 chr3 38712617 38712711 -120887072 + B1F2 SINE Alu 42 139 -10 2 880 248 200 0 32 chr3 38713109 38713171 -120886612 + (CAGAGA)n Simple_repeat Simple_repeat 5 64 0 2 880 234 262 0 0 chr3 38713142 38713203 -120886580 + (CATA)n Simple_repeat Simple_repeat 4 64 0 2 880 307 235 12 0 chr3 38713878 38713959 -120885824 - HAL1-2a_MD LINE L1 -598 2426 2345 2 880 702 236 38 60 chr3 38713978 38714163 -120885620 - B3A SINE B2 -16 182 2 2 880 688 282 51 20 chr3 38715053 38715306 -120884477 - MTD LTR MaLR -150 269 9 2 880 3245 32 24 29 chr3 38715457 38715870 -120883913 + IAPLTR2a LTR ERVK 1 411 0 2 880 455 194 256 17 chr3 38717628 38717809 -120881974 - RMER4B LTR ERVK -18 567 343 2 880 259 56 117 23 chr3 38717840 38717968 -120881815 + (CAAG)n Simple_repeat Simple_repeat 3 142 0 2 880 1485 145 30 49 chr3 38717991 38718296 -120881487 - RMER4B LTR ERVK -286 299 1 2 880 366 306 72 8 chr3 38718324 38718449 -120881334 + RSINE1 SINE B4 18 150 -15 2 880 351 0 0 0 chr3 38718453 38718492 -120881291 + (CA)n Simple_repeat Simple_repeat 2 40 0 2 880 221 185 0 18 chr3 38718684 38718739 -120881044 + A-rich Low_complexity Low_complexity 2 55 0 2 880 3161 39 18 0 chr3 38720479 38720862 -120878921 - L1Md_F2 LINE L1 0 6582 6193 2 880 559 339 66 22 chr3 38720997 38721223 -120878560 + B4A SINE B4 41 276 -16 2 880 590 182 0 7 chr3 38721261 38721416 -120878367 + (CA)n Simple_repeat Simple_repeat 2 155 0 2 880 710 235 8 190 chr3 38721675 38721938 -120877845 + B3 SINE B2 1 215 -1 2 880 427 283 91 0 chr3 38721940 38722170 -120877613 - LTR37B LTR ERV1 -11 457 207 2 880 608 92 0 0 chr3 38722423 38722510 -120877273 + B1_Mur3 SINE Alu 46 132 -17 2 880 450 0 0 0 chr3 38722520 38722570 -120877213 + (CA)n Simple_repeat Simple_repeat 2 51 0 2 880 189 107 0 0 chr3 38722887 38722915 -120876868 + (TA)n Simple_repeat Simple_repeat 2 29 0 2 880 392 257 102 11 chr3 38722994 38723139 -120876644 + B3A SINE B2 5 165 -33 2 880 449 101 22 0 chr3 38723139 38723228 -120876555 + (TCTG)n Simple_repeat Simple_repeat 2 92 0 2 880 392 257 102 11 chr3 38723228 38723259 -120876524 + B3A SINE B2 166 196 -2 2 880 691 251 64 15 chr3 38723944 38724146 -120875637 - B3 SINE B2 -3 213 2 2 880 4889 123 34 6 chr3 38726200 38726917 -120872866 + RMER19A LTR ERVK 1 737 0 2 880 376 358 20 20 chr3 38727358 38727606 -120872177 + RMER15 LTR ERVL 274 521 -54 2 880 328 311 138 19 chr3 38729137 38729347 -120870436 + B4A SINE B4 2 236 -56 2 880 666 190 281 6 chr3 38729765 38729929 -120869854 - B3 SINE B2 -6 210 2 2 880 2218 150 45 91 chr3 38730113 38730554 -120869229 - MTC LTR MaLR 0 421 1 2 880 2171 196 136 116 chr3 38730554 38730739 -120869044 - MTC-int LTR MaLR 0 1098 943 2 880 977 79 7 0 chr3 38730739 38730879 -120868904 + L1Md_F2 LINE L1 6442 6582 0 3 880 2171 196 136 116 chr3 38730879 38730919 -120868864 - MTC-int LTR MaLR -156 942 940 2 880 1245 34 7 0 chr3 38730919 38731066 -120868717 + B1_Mus1 SINE Alu 1 148 0 3 880 360 0 0 0 chr3 38731069 38731109 -120868674 + (TAAA)n Simple_repeat Simple_repeat 2 41 0 3 880 2244 179 101 69 chr3 38731109 38731599 -120868184 - MTC-int LTR MaLR -159 939 382 2 880 459 0 0 0 chr3 38731599 38731650 -120868133 + (TTTTG)n Simple_repeat Simple_repeat 2 52 0 3 880 2244 162 66 21 chr3 38731650 38731886 -120867897 - MTC-int LTR MaLR -874 384 123 2 880 1582 189 72 0 chr3 38731875 38732193 -120867590 - MTC LTR MaLR -80 341 1 2 880 688 151 0 32 chr3 38732920 38733105 -120866678 + (TG)n Simple_repeat Simple_repeat 2 180 0 3 880 713 282 0 37 chr3 38733106 38733294 -120866489 - B3A SINE B2 -16 182 2 3 880 440 281 0 8 chr3 38733446 38733568 -120866215 + ID_B1 SINE B4 104 224 0 3 880 6810 119 35 12 chr3 38733612 38733725 -120866058 - Lx LINE L1 -1 6653 6536 3 880 189 0 0 0 chr3 38733725 38733746 -120866037 + (CCCA)n Simple_repeat Simple_repeat 1 21 0 3 880 6810 119 35 12 chr3 38733746 38734676 -120865107 - Lx LINE L1 -119 6535 5588 3 880 423 0 0 0 chr3 38734728 38734775 -120865008 + (TG)n Simple_repeat Simple_repeat 2 48 0 3 880 454 299 27 0 chr3 38734776 38734923 -120864860 - B3A SINE B2 -47 151 1 3 880 240 43 65 0 chr3 38736934 38736980 -120862803 + (TA)n Simple_repeat Simple_repeat 2 50 0 3 880 798 225 21 1 chr3 38737694 38737883 -120861900 + B3A SINE B2 2 198 -18 3 880 210 281 0 30 chr3 38738931 38738997 -120860786 + CT-rich Low_complexity Low_complexity 3 66 0 3 880 534 57 0 0 chr3 38740510 38740580 -120859203 + (TG)n Simple_repeat Simple_repeat 2 71 0 3 880 319 327 98 20 chr3 38740583 38740644 -120859139 - B4A SINE B4 -22 270 212 3 880 387 0 0 0 chr3 38740644 38740687 -120859096 + (TTTG)n Simple_repeat Simple_repeat 1 43 0 3 880 319 327 98 20 chr3 38740687 38740778 -120859005 - B4A SINE B4 -81 211 107 3 880 637 222 168 17 chr3 38741214 38741393 -120858390 + B4 SINE B4 1 206 -86 3 880 1450 213 76 25 chr3 38741393 38741749 -120858034 + ORR1D1 LTR MaLR 1 374 0 3 880 417 20 0 0 chr3 38741762 38741812 -120857971 + (CA)n Simple_repeat Simple_repeat 2 51 0 3 880 405 0 0 0 chr3 38742355 38742400 -120857383 + (TC)n Simple_repeat Simple_repeat 2 46 0 3 880 342 98 0 0 chr3 38742400 38742450 -120857333 + (TG)n Simple_repeat Simple_repeat 2 52 0 3 880 965 291 52 16 chr3 38742852 38743168 -120856615 - MTE2a LTR MaLR -17 362 53 3 880 573 110 0 0 chr3 38743177 38743268 -120856515 + (CA)n Simple_repeat Simple_repeat 1 91 0 3 880 293 286 33 0 chr3 38743354 38743445 -120856338 + PB1D10 SINE Alu 23 116 -1 3 880 1092 221 84 137 chr3 38744534 38744928 -120854855 + MTEa LTR MaLR 1 373 -6 3 880 219 114 0 0 chr3 38745356 38745391 -120854392 + (TGG)n Simple_repeat Simple_repeat 1 35 0 3 880 207 0 0 0 chr3 38745392 38745415 -120854368 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 3 880 360 0 0 0 chr3 38746482 38746522 -120853261 + (CA)n Simple_repeat Simple_repeat 2 41 0 3 880 29 47 0 0 chr3 38748433 38748476 -120851307 + AT_rich Low_complexity Low_complexity 1 43 0 3 880 765 194 0 0 chr3 38749125 38749264 -120850519 - B1_Mur1 SINE Alu -9 140 2 3 880 3014 223 46 51 chr3 38749691 38750499 -120849284 + RLTR19-int LTR ERVK 2390 3193 -2944 3 880 1907 202 65 59 chr3 38750656 38751161 -120848622 + RLTR19-int LTR ERVK 3524 4031 -2106 3 880 1683 156 43 51 chr3 38751210 38751561 -120848222 + RLTR19-int LTR ERVK 4034 4381 -1756 3 880 402 175 0 0 chr3 38753307 38753387 -120846396 + (TG)n Simple_repeat Simple_repeat 2 81 0 3 880 470 68 27 0 chr3 38753389 38753463 -120846320 + (CAGAGA)n Simple_repeat Simple_repeat 3 78 0 3 880 236 294 26 68 chr3 38753769 38753886 -120845897 + L1M2 LINE L1 4408 4519 -1621 3 880 429 281 58 68 chr3 38754069 38754260 -120845523 + L1M2 LINE L1 4844 5032 -1111 3 880 465 286 127 16 chr3 38754937 38755277 -120844506 - L2a LINE L2 -333 3093 2723 3 880 1172 281 12 31 chr3 38755677 38756004 -120843779 + MTE2b LTR MaLR 1 321 -58 3 880 290 247 78 0 chr3 38756227 38756298 -120843485 + RSINE1 SINE B4 5 81 -84 3 880 1724 137 0 10 chr3 38756298 38756594 -120843189 + RLTR15 LTR ERVK 1 293 -66 3 880 254 393 45 0 chr3 38756604 38756693 -120843090 + RSINE1 SINE B4 65 157 -8 3 880 23 33 0 0 chr3 38756704 38756734 -120843049 + AT_rich Low_complexity Low_complexity 1 30 0 3 880 1023 27 45 58 chr3 38757565 38757720 -120842063 - L1Md_F3 LINE L1 0 6584 6432 3 880 1218 253 53 23 chr3 38757796 38758167 -120841616 + MTD LTR MaLR 1 404 -15 3 880 1130 84 0 0 chr3 38758244 38758387 -120841396 + B1_Mus1 SINE Alu 5 147 -1 3 880 186 43 0 0 chr3 38758393 38758416 -120841367 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 3 880 300 53 0 0 chr3 38758806 38758844 -120840939 + (TA)n Simple_repeat Simple_repeat 2 39 0 3 880 513 0 0 0 chr3 38758844 38758900 -120840883 + (TG)n Simple_repeat Simple_repeat 2 58 0 3 880 919 314 62 3 chr3 38758966 38759286 -120840497 - MTEa LTR MaLR -14 365 27 3 880 3469 34 56 2 chr3 38760537 38760951 -120838832 + RLTR10C LTR ERVK 1 436 0 3 880 289 297 33 0 chr3 38761173 38761264 -120838519 + PB1D10 SINE Alu 4 97 -20 3 880 29 0 0 0 chr3 38761334 38761363 -120838420 + AT_rich Low_complexity Low_complexity 1 29 0 3 880 194 206 16 0 chr3 38761474 38761537 -120838246 + CT-rich Low_complexity Low_complexity 2 65 0 3 880 337 250 19 0 chr3 38761814 38761922 -120837861 + (TG)n Simple_repeat Simple_repeat 1 110 0 3 880 237 83 0 0 chr3 38761990 38762026 -120837757 + (TCTG)n Simple_repeat Simple_repeat 3 38 0 3 880 288 262 168 0 chr3 38762740 38762847 -120836936 + Lx8 LINE L1 7174 7298 -175 3 880 1535 138 17 55 chr3 38762848 38763193 -120836590 - RLTR11B LTR ERVK 0 453 122 3 880 4832 109 21 13 chr3 38763203 38763919 -120835864 - Lx LINE L1 -7 6647 5926 3 880 567 108 0 0 chr3 38763919 38764012 -120835771 + (T)n Simple_repeat Simple_repeat 1 93 0 3 880 1043 102 0 26 chr3 38764012 38764163 -120835620 - B1_Mus1 SINE Alu 0 148 2 3 880 2670 83 2 0 chr3 38764164 38764565 -120835218 - Lx LINE L1 -698 5938 5537 3 880 631 156 55 0 chr3 38764565 38764693 -120835090 - RLTR11B LTR ERVK -318 135 1 3 880 314 296 35 76 chr3 38764702 38764874 -120834909 + Lx8 LINE L1 7305 7469 -4 3 880 3569 13 5 0 chr3 38764930 38765324 -120834459 + MTA_Mm LTR MaLR 1 396 0 3 880 8526 49 2 69 chr3 38765324 38766501 -120833282 + MTA_Mm-int LTR MaLR 1 1098 0 3 880 3557 13 5 0 chr3 38766501 38766895 -120832888 + MTA_Mm LTR MaLR 1 396 0 3 880 630 246 11 50 chr3 38766913 38767093 -120832690 + B3A SINE B2 2 174 -24 3 880 684 299 9 9 chr3 38767607 38767820 -120831963 - B3 SINE B2 0 216 4 3 880 705 165 90 0 chr3 38767847 38767980 -120831803 - B1_Mur1 SINE Alu -1 148 4 3 880 591 342 60 19 chr3 38767983 38768350 -120831433 - L1M2 LINE L1 -2391 4454 4073 3 880 471 35 0 0 chr3 38768350 38768407 -120831376 + (TG)n Simple_repeat Simple_repeat 2 58 0 3 880 368 309 53 58 chr3 38768443 38768649 -120831134 - B4 SINE B4 -4 288 84 3 880 460 299 147 71 chr3 38768780 38769791 -120829992 - L1M2 LINE L1 -2860 3985 2892 3 880 1290 14 0 0 chr3 38769791 38769937 -120829846 - B1_Mus2 SINE Alu 0 147 2 3 880 460 277 48 6 chr3 38769937 38770104 -120829679 - L1M2 LINE L1 -3958 2891 2718 3 880 738 180 87 35 chr3 38770113 38770276 -120829507 - ORR1C2 LTR MaLR 0 384 213 3 880 2369 119 6 3 chr3 38770276 38770638 -120829145 + RLTR13D3 LTR ERVK 1 363 -751 3 880 1427 177 85 25 chr3 38770633 38770952 -120828831 + ORR1B2 LTR MaLR 29 366 -1 3 880 291 28 0 0 chr3 38774097 38774133 -120825650 + (CA)n Simple_repeat Simple_repeat 2 37 0 3 880 414 0 0 0 chr3 38774683 38774729 -120825054 + (TG)n Simple_repeat Simple_repeat 1 46 0 3 880 610 254 50 86 chr3 38774885 38775105 -120824678 + B3 SINE B2 2 213 -3 3 880 522 0 0 0 chr3 38775594 38775652 -120824131 + (CA)n Simple_repeat Simple_repeat 2 59 0 3 880 2163 183 14 30 chr3 38775691 38776119 -120823664 - MTC LTR MaLR 0 421 1 3 880 21 0 0 0 chr3 38776711 38776732 -120823051 + AT_rich Low_complexity Low_complexity 1 21 0 3 880 315 0 0 0 chr3 38776863 38776898 -120822885 + (CAGA)n Simple_repeat Simple_repeat 1 35 0 3 880 1210 244 22 110 chr3 38777132 38777533 -120822250 + MTE2a LTR MaLR 14 379 0 3 880 354 281 111 15 chr3 38777714 38777985 -120821798 + L1MEg LINE L1 694 990 -5094 3 880 210 118 0 0 chr3 38778024 38778058 -120821725 + (TG)n Simple_repeat Simple_repeat 1 34 0 3 880 385 336 94 0 chr3 38778082 38778210 -120821573 - RSINE1 SINE B4 -13 152 13 3 880 443 279 30 48 chr3 38778253 38778419 -120821364 - RSINE1 SINE B4 0 165 3 3 880 26 0 0 0 chr3 38778433 38778459 -120821324 + AT_rich Low_complexity Low_complexity 1 26 0 3 880 960 275 82 12 chr3 38778493 38778824 -120820959 + ORR1E LTR MaLR 6 359 0 3 880 4048 36 0 0 chr3 38778881 38779348 -120820435 + L1Md_T LINE L1 6115 6581 -1 3 880 261 0 0 0 chr3 38779649 38779678 -120820105 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 3 880 552 298 105 18 chr3 38780188 38780407 -120819376 - ORR1E LTR MaLR -116 243 6 3 880 928 291 67 26 chr3 38780484 38780830 -120818953 - MTEb LTR MaLR -2 377 18 3 880 804 280 111 14 chr3 38781189 38781486 -120818297 - MTD LTR MaLR -91 328 3 3 880 259 169 0 92 chr3 38781766 38781831 -120817952 - RSINE1 SINE B4 0 165 107 3 880 208 64 128 0 chr3 38782078 38782125 -120817658 + (TTATA)n Simple_repeat Simple_repeat 5 57 0 3 880 196 30 61 0 chr3 38782929 38782962 -120816821 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 3 880 405 58 0 0 chr3 38783583 38783635 -120816148 + (TTTTC)n Simple_repeat Simple_repeat 4 55 0 3 880 252 232 0 0 chr3 38792975 38793074 -120806709 + (TG)n Simple_repeat Simple_repeat 2 100 0 3 880 656 127 0 9 chr3 38793086 38793197 -120806586 + (CCCCCT)n Simple_repeat Simple_repeat 1 110 0 3 880 249 57 0 0 chr3 38793202 38793237 -120806546 + (TCTCTG)n Simple_repeat Simple_repeat 6 40 0 3 880 810 238 246 10 chr3 38794362 38794651 -120805132 + ORR1E LTR MaLR 1 357 -2 3 880 192 200 0 0 chr3 38795259 38795304 -120804479 + (TG)n Simple_repeat Simple_repeat 2 46 0 3 880 2940 45 55 16 chr3 38795338 38795719 -120804064 - MTA_Mm LTR MaLR 0 396 1 3 880 426 242 0 0 chr3 38795754 38795878 -120803905 + (TA)n Simple_repeat Simple_repeat 1 124 0 3 880 389 319 88 37 chr3 38795884 38796259 -120803524 - L1MA8 LINE L1 -64 6227 5834 4 880 415 310 157 32 chr3 38796867 38797280 -120802503 - L1MA8 LINE L1 -754 5543 5096 4 13 269 51 0 25 chr3 38797280 38797320 -120802463 + (TAA)n Simple_repeat Simple_repeat 1 39 0 4 881 415 297 176 33 chr3 38797320 38797584 -120802199 - L1MA8 LINE L1 -1048 5095 4778 4 881 337 312 0 16 chr3 38797638 38797765 -120802018 - Charlie1a DNA MER1_type -773 682 558 4 881 251 345 0 0 chr3 38798270 38798357 -120801426 + ID_B1 SINE B4 86 172 -52 4 881 412 247 0 0 chr3 38798798 38798879 -120800904 + PB1D7 SINE Alu 31 111 -9 4 881 351 0 0 0 chr3 38800983 38801022 -120798761 + (TTTTG)n Simple_repeat Simple_repeat 5 43 0 4 881 430 266 16 8 chr3 38801375 38801504 -120798279 + B4 SINE B4 146 275 -17 4 881 650 244 25 12 chr3 38801825 38801987 -120797796 - B2_Mm2 SINE B2 -31 164 1 4 881 522 264 109 11 chr3 38802998 38803182 -120796601 + MTD LTR MaLR 1 202 -217 4 881 907 267 72 46 chr3 38804984 38805331 -120794452 + MTD LTR MaLR 46 379 0 4 881 312 119 0 0 chr3 38806324 38806383 -120793400 + (TG)n Simple_repeat Simple_repeat 2 60 0 4 881 254 159 14 0 chr3 38808672 38808741 -120791042 + (TA)n Simple_repeat Simple_repeat 1 70 0 4 881 22 0 0 0 chr3 38808868 38808890 -120790893 + AT_rich Low_complexity Low_complexity 1 22 0 4 881 22 0 0 0 chr3 38809090 38809112 -120790671 + AT_rich Low_complexity Low_complexity 1 22 0 4 881 527 0 16 0 chr3 38809725 38809788 -120789995 + (CA)n Simple_repeat Simple_repeat 2 65 0 4 881 215 0 0 62 chr3 38813728 38813760 -120786023 + (TTTTA)n Simple_repeat Simple_repeat 5 34 0 4 881 443 258 0 0 chr3 38813761 38813854 -120785929 - PB1D7 SINE Alu -8 112 20 4 881 1711 165 91 18 chr3 38814018 38814358 -120785425 - ORR1B2 LTR MaLR 0 367 3 4 881 517 260 83 8 chr3 38814540 38814672 -120785111 + RSINE1 SINE B4 2 143 -22 4 881 294 29 0 0 chr3 38814773 38814808 -120784975 + (TATG)n Simple_repeat Simple_repeat 4 38 0 4 881 216 0 0 0 chr3 38815055 38815079 -120784704 + (T)n Simple_repeat Simple_repeat 1 24 0 4 881 1153 82 0 0 chr3 38815079 38815226 -120784557 - B1_Mus1 SINE Alu 0 148 2 4 881 282 56 0 0 chr3 38816040 38816076 -120783707 + (TG)n Simple_repeat Simple_repeat 2 37 0 4 881 374 298 23 55 chr3 38816422 38816550 -120783233 + RSINE1 SINE B4 40 163 -2 4 881 471 18 0 0 chr3 38817317 38817373 -120782410 + (TG)n Simple_repeat Simple_repeat 2 57 0 4 881 968 210 43 35 chr3 38819467 38819699 -120780084 - ORR1D1 LTR MaLR -69 305 72 4 881 202 289 0 19 chr3 38821507 38821560 -120778223 + (TG)n Simple_repeat Simple_repeat 1 52 0 4 881 427 331 6 30 chr3 38821565 38821733 -120778050 - B4A SINE B4 -3 289 126 4 881 741 267 17 0 chr3 38822742 38822922 -120776861 + B3 SINE B2 1 183 -33 4 881 180 222 0 0 chr3 38824813 38824849 -120774934 - MIRm SINE MIR -86 190 155 4 881 1452 44 0 0 chr3 38825322 38825502 -120774281 + (TTCCC)n Simple_repeat Simple_repeat 1 180 0 4 881 935 113 0 13 chr3 38825502 38825655 -120774128 + (TCCCC)n Simple_repeat Simple_repeat 5 155 0 4 881 573 317 0 0 chr3 38826512 38826673 -120773110 + B3A SINE B2 4 164 -34 4 881 384 77 0 0 chr3 38826673 38826725 -120773058 + (CA)n Simple_repeat Simple_repeat 1 52 0 4 881 195 69 0 0 chr3 38826838 38826867 -120772916 + (TG)n Simple_repeat Simple_repeat 2 30 0 4 881 291 28 0 0 chr3 38827495 38827531 -120772252 + (CA)n Simple_repeat Simple_repeat 1 36 0 4 881 312 262 86 47 chr3 38828236 38828364 -120771419 - ID_B1 SINE B4 -2 222 90 4 881 345 136 0 0 chr3 38828486 38828552 -120771231 + (TTCA)n Simple_repeat Simple_repeat 2 67 0 4 881 301 221 11 34 chr3 38828584 38828673 -120771110 - L1MB3 LINE L1 -2 6181 6095 4 881 21 0 0 0 chr3 38829223 38829244 -120770539 + AT_rich Low_complexity Low_complexity 1 21 0 4 881 267 31 0 0 chr3 38829519 38829551 -120770232 + (CA)n Simple_repeat Simple_repeat 1 32 0 4 881 514 302 37 8 chr3 38829561 38829803 -120769980 - L1M3 LINE L1 -1830 4316 4054 4 881 270 81 0 0 chr3 38829933 38829970 -120769813 + (CAAAA)n Simple_repeat Simple_repeat 4 40 0 4 881 1667 304 121 51 chr3 38830479 38831798 -120767985 - L1_Rod LINE L1 -97 5750 4340 4 881 462 265 27 20 chr3 38831817 38831967 -120767816 - L1_Rod LINE L1 -883 4964 4814 4 881 261 0 0 0 chr3 38832697 38832726 -120767057 + (CAAT)n Simple_repeat Simple_repeat 4 32 0 4 881 345 327 0 0 chr3 38832778 38832879 -120766904 + (TG)n Simple_repeat Simple_repeat 1 101 0 4 881 471 222 0 0 chr3 38832884 38833001 -120766782 + (TA)n Simple_repeat Simple_repeat 1 117 0 4 881 871 251 18 61 chr3 38833059 38833339 -120766444 - B4 SINE B4 0 292 25 4 881 369 0 0 0 chr3 38834522 38834563 -120765220 + (TG)n Simple_repeat Simple_repeat 1 41 0 4 881 674 281 82 103 chr3 38834579 38834861 -120764922 - B4 SINE B4 -14 278 3 4 881 272 363 0 0 chr3 38834896 38834998 -120764785 - PB1D7 SINE Alu -18 102 1 4 881 874 263 0 0 chr3 38835036 38835207 -120764576 + B3 SINE B2 4 174 -42 4 881 470 318 44 39 chr3 38837632 38837812 -120761971 + B3A SINE B2 2 182 -16 4 881 228 243 0 0 chr3 38837812 38837886 -120761897 + (CA)n Simple_repeat Simple_repeat 1 74 0 4 881 206 193 18 0 chr3 38838444 38838501 -120761282 + CT-rich Low_complexity Low_complexity 2 59 0 4 881 204 182 0 0 chr3 38839115 38839159 -120760624 + (TG)n Simple_repeat Simple_repeat 1 44 0 4 881 348 115 48 32 chr3 38839163 38839226 -120760557 - HAL1-3A_ME LINE L1 -829 2029 1966 4 881 240 301 58 139 chr3 38840061 38840321 -120759462 + ID_B1 SINE B4 1 242 -50 4 881 900 295 0 9 chr3 38841984 38842196 -120757587 + B4 SINE B4 17 226 -66 4 881 676 252 19 19 chr3 38842199 38842357 -120757426 + B3 SINE B2 4 161 -55 4 881 232 130 17 85 chr3 38842312 38842371 -120757412 - RLTR13B2 LTR ERVK -652 170 116 4 881 31 76 0 0 chr3 38842726 38842792 -120756991 + AT_rich Low_complexity Low_complexity 1 66 0 4 881 630 204 79 21 chr3 38843353 38843493 -120756290 + B1_Mur1 SINE Alu 2 149 0 4 881 297 0 0 0 chr3 38843511 38843544 -120756239 + (TAAA)n Simple_repeat Simple_repeat 3 35 0 4 881 342 0 0 0 chr3 38844725 38844763 -120755020 + (CA)n Simple_repeat Simple_repeat 1 38 0 4 881 227 340 58 0 chr3 38846815 38846918 -120752865 - L1M3 LINE L1 -562 5729 5621 4 881 205 27 0 75 chr3 38847505 38847545 -120752238 + (TTTTTG)n Simple_repeat Simple_repeat 6 42 0 4 881 367 301 174 62 chr3 38847545 38847836 -120751947 - L1M3 LINE L1 -1201 4939 4620 4 881 867 233 19 58 chr3 38847836 38848041 -120751742 - B3A SINE B2 -1 197 1 4 881 367 301 174 62 chr3 38848041 38848220 -120751563 - L1M3 LINE L1 -1521 4619 4416 4 881 258 216 77 51 chr3 38848987 38849065 -120750718 + MIRc SINE MIR 78 157 -111 4 881 264 235 17 10 chr3 38849197 38849265 -120750518 + ID_B1 SINE B4 78 142 -150 4 881 429 195 24 0 chr3 38849303 38849385 -120750398 + B1_Mus2 SINE Alu 42 125 -22 4 881 35 41 0 0 chr3 38850636 38850685 -120749098 + AT_rich Low_complexity Low_complexity 1 49 0 4 881 539 311 80 0 chr3 38850700 38850851 -120748932 - RSINE1 SINE B4 0 165 3 4 881 27 62 0 0 chr3 38851061 38851109 -120748674 + AT_rich Low_complexity Low_complexity 1 48 0 4 881 203 152 0 0 chr3 38851119 38851152 -120748631 + (TG)n Simple_repeat Simple_repeat 1 33 0 4 881 805 331 12 4 chr3 38851158 38851407 -120748376 - B4 SINE B4 -2 290 40 4 881 24 0 0 0 chr3 38852529 38852553 -120747230 + AT_rich Low_complexity Low_complexity 1 24 0 4 881 21 0 0 0 chr3 38853616 38853637 -120746146 + AT_rich Low_complexity Low_complexity 1 21 0 4 881 630 0 0 0 chr3 38853984 38854054 -120745729 + (GA)n Simple_repeat Simple_repeat 1 70 0 4 881 2005 74 117 21 chr3 38854247 38854538 -120745245 - L1_Mus3 LINE L1 -6 6632 6314 4 881 835 254 19 61 chr3 38856988 38857202 -120742581 - B3 SINE B2 -7 209 5 4 881 22 0 0 0 chr3 38857778 38857800 -120741983 + AT_rich Low_complexity Low_complexity 1 22 0 4 881 495 0 0 0 chr3 38858735 38858790 -120740993 + (TA)n Simple_repeat Simple_repeat 1 55 0 4 881 815 268 63 102 chr3 38859116 38859510 -120740273 - MTE2a LTR MaLR 0 379 1 4 881 1536 228 65 19 chr3 38859724 38860095 -120739688 + MTD LTR MaLR 18 405 -14 4 881 189 0 0 0 chr3 38860185 38860206 -120739577 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 4 881 653 311 22 18 chr3 38860345 38860568 -120739215 - Lx8 LINE L1 -142 7331 7108 4 881 539 302 30 36 chr3 38860576 38860741 -120739042 + Lx9 LINE L1 6341 6504 -1140 4 881 23 0 0 0 chr3 38861777 38861800 -120737983 + AT_rich Low_complexity Low_complexity 1 23 0 4 881 2190 161 172 69 chr3 38862340 38862757 -120737026 - MT2B LTR ERVL -8 593 122 4 881 233 29 29 0 chr3 38862757 38862791 -120736992 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 4 881 2190 161 172 69 chr3 38862791 38862907 -120736876 - MT2B LTR ERVL -480 121 5 4 881 567 297 126 0 chr3 38863132 38863307 -120736476 - ID_B1 SINE B4 -16 208 12 4 881 30 45 0 0 chr3 38863419 38863463 -120736320 + AT_rich Low_complexity Low_complexity 1 44 0 4 881 315 276 47 5 chr3 38863563 38863756 -120736027 - RMER17C LTR ERVK -133 277 77 4 881 21 0 0 0 chr3 38864542 38864563 -120735220 + AT_rich Low_complexity Low_complexity 1 21 0 4 881 22 0 0 0 chr3 38865325 38865347 -120734436 + AT_rich Low_complexity Low_complexity 1 22 0 4 881 187 347 20 69 chr3 38865615 38865717 -120734066 + L4 LINE RTE 1232 1328 -701 4 881 365 319 11 93 chr3 38867291 38867474 -120732309 + B3A SINE B2 2 169 -29 4 881 219 204 0 0 chr3 38867522 38867571 -120732212 + (TATATG)n Simple_repeat Simple_repeat 6 54 0 4 881 348 64 0 0 chr3 38869979 38870026 -120729757 + (TCTG)n Simple_repeat Simple_repeat 2 48 0 5 881 331 300 53 91 chr3 38871124 38871493 -120728290 - ORR1E LTR MaLR -20 359 24 5 881 486 0 0 0 chr3 38872196 38872250 -120727533 + (CA)n Simple_repeat Simple_repeat 1 54 0 5 881 513 32 0 0 chr3 38872250 38872312 -120727471 + (GA)n Simple_repeat Simple_repeat 2 64 0 5 881 279 0 0 0 chr3 38872874 38872905 -120726878 + (CAAA)n Simple_repeat Simple_repeat 4 34 0 5 881 198 71 0 0 chr3 38873354 38873382 -120726401 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 5 881 289 247 24 12 chr3 38873533 38873615 -120726168 + CT-rich Low_complexity Low_complexity 2 84 0 5 881 738 248 21 0 chr3 38873616 38873761 -120726022 - B1_Mur1 SINE Alu 0 149 2 5 881 741 114 24 24 chr3 38876508 38876678 -120723105 + (TA)n Simple_repeat Simple_repeat 2 171 0 5 881 1258 55 0 0 chr3 38877001 38877147 -120722636 - B1_Mus2 SINE Alu -1 146 1 5 881 240 190 93 81 chr3 38883026 38883112 -120716671 - Lx8 LINE L1 -4 7469 7383 5 881 552 325 20 13 chr3 38883198 38883414 -120716369 - Lx9 LINE L1 -369 7275 6967 5 881 986 230 61 0 chr3 38883455 38883651 -120716132 - B3 SINE B2 -6 210 3 5 881 270 190 35 0 chr3 38883869 38883927 -120715856 + L1MA4 LINE L1 5846 5905 -395 5 881 460 231 46 9 chr3 38884223 38884332 -120715451 + B3A SINE B2 2 114 -84 5 881 422 270 226 24 chr3 38884340 38884636 -120715147 - L1_Rod LINE L1 -153 5694 5339 5 881 597 238 49 7 chr3 38884661 38884805 -120714978 - MTEb LTR MaLR -113 266 117 5 881 926 233 14 23 chr3 38885525 38885740 -120714043 + B3 SINE B2 2 214 -2 5 881 21 36 0 0 chr3 38885785 38885813 -120713970 + AT_rich Low_complexity Low_complexity 1 28 0 5 881 28 29 0 0 chr3 38887426 38887461 -120712322 + AT_rich Low_complexity Low_complexity 1 35 0 5 881 775 246 16 27 chr3 38887532 38887716 -120712067 - B3A SINE B2 -16 182 1 5 881 265 291 0 0 chr3 38888730 38888785 -120710998 + BC1_Mm scRNA scRNA 26 80 -72 5 881 678 382 30 4 chr3 38888794 38889062 -120710721 + B4A SINE B4 3 277 -15 5 881 774 243 215 4 chr3 38889446 38889706 -120710077 - MTEa LTR MaLR -2 377 63 5 881 249 139 0 0 chr3 38890066 38890109 -120709674 + (TTTTG)n Simple_repeat Simple_repeat 3 45 0 5 881 370 260 135 0 chr3 38890729 38890825 -120708958 + ID_B1 SINE B4 44 152 -72 5 881 480 18 0 0 chr3 38891339 38891396 -120708387 + (CA)n Simple_repeat Simple_repeat 1 57 0 5 881 190 259 93 0 chr3 38891431 38891485 -120708298 - MIRm SINE MIR -125 151 93 5 881 366 130 56 0 chr3 38892375 38892483 -120707300 + (TAGA)n Simple_repeat Simple_repeat 4 117 0 5 881 207 0 0 0 chr3 38892556 38892579 -120707204 + (TG)n Simple_repeat Simple_repeat 2 24 0 5 881 36 53 0 0 chr3 38892581 38892638 -120707145 + AT_rich Low_complexity Low_complexity 1 57 0 5 881 1286 48 0 0 chr3 38893734 38893880 -120705903 + B1_Mus1 SINE Alu 2 147 -1 5 881 180 0 0 0 chr3 38893881 38893901 -120705882 + (CAAAAA)n Simple_repeat Simple_repeat 4 23 0 5 881 222 37 0 0 chr3 38893911 38893938 -120705845 + (CAA)n Simple_repeat Simple_repeat 2 28 0 5 881 863 234 83 0 chr3 38893946 38894138 -120705645 + B3 SINE B2 3 210 -6 5 881 466 239 9 18 chr3 38894290 38894401 -120705382 + PB1D9 SINE Alu 9 118 -2 5 881 219 36 0 0 chr3 38895783 38895811 -120703972 + (CAAA)n Simple_repeat Simple_repeat 4 31 0 5 881 1106 105 0 12 chr3 38897537 38897710 -120702073 + (CATATA)n Simple_repeat Simple_repeat 2 172 0 5 881 25 0 0 0 chr3 38898135 38898160 -120701623 + AT_rich Low_complexity Low_complexity 1 25 0 5 881 1242 68 7 0 chr3 38898160 38898307 -120701476 - B1_Mus1 SINE Alu 0 148 1 5 881 22 0 0 0 chr3 38899818 38899840 -120699943 + AT_rich Low_complexity Low_complexity 1 22 0 5 881 573 15 0 0 chr3 38900943 38901009 -120698774 + (GA)n Simple_repeat Simple_repeat 1 66 0 5 881 24 0 0 0 chr3 38902081 38902105 -120697678 + AT_rich Low_complexity Low_complexity 1 24 0 5 881 304 311 63 38 chr3 38902570 38902790 -120696993 - B4A SINE B4 -20 272 2 5 881 881 18 0 18 chr3 38904435 38904547 -120695236 + (TCCC)n Simple_repeat Simple_repeat 4 113 0 5 881 216 0 0 0 chr3 38904553 38904577 -120695206 + (CA)n Simple_repeat Simple_repeat 1 24 0 5 881 526 288 135 35 chr3 38904759 38904989 -120694794 - B4A SINE B4 -20 272 20 5 881 24 0 0 0 chr3 38905605 38905629 -120694154 + AT_rich Low_complexity Low_complexity 1 24 0 5 881 23 0 0 0 chr3 38910886 38910909 -120688874 + AT_rich Low_complexity Low_complexity 1 23 0 5 881 186 43 0 0 chr3 38910970 38910993 -120688790 + (TTG)n Simple_repeat Simple_repeat 2 24 0 5 881 922 164 0 14 chr3 38911202 38911344 -120688439 - B1_Mur4 SINE Alu -9 141 2 5 881 495 0 0 0 chr3 38912378 38912433 -120687350 + (CA)n Simple_repeat Simple_repeat 1 55 0 5 881 442 292 0 0 chr3 38914183 38914289 -120685494 - PB1D10 SINE Alu -9 108 3 5 881 261 248 101 17 chr3 38915381 38915500 -120684283 + Lx8 LINE L1 7339 7467 -6 5 881 2260 207 164 30 chr3 38915785 38916322 -120683461 + RMER19C LTR ERVK 1 609 -2 5 881 443 286 34 45 chr3 38916373 38916609 -120683174 + MTD LTR MaLR 1 419 0 5 881 34 65 0 0 chr3 38918111 38918173 -120681610 + AT_rich Low_complexity Low_complexity 1 62 0 5 881 878 28 9 0 chr3 38918187 38918296 -120681487 + (TTC)n Simple_repeat Simple_repeat 2 111 0 5 881 1126 46 46 0 chr3 38918297 38918427 -120681356 - B1_Mus1 SINE Alu -12 136 1 5 881 4131 212 87 5 chr3 38918436 38919434 -120680349 - Lx9 LINE L1 0 7644 6565 5 881 3009 221 47 38 chr3 38919430 38920257 -120679526 - L1_Rod LINE L1 -1449 4398 3564 5 881 876 215 69 41 chr3 38920279 38920497 -120679286 + MTE2a LTR MaLR 152 375 -4 5 881 684 299 13 0 chr3 38920938 38921095 -120678688 + RSINE1 SINE B4 4 162 -3 5 881 441 116 0 0 chr3 38921762 38921831 -120677952 + (CA)n Simple_repeat Simple_repeat 2 70 0 5 881 1284 79 0 0 chr3 38922238 38922402 -120677381 - L1_Mus3 LINE L1 -362 6276 6113 5 881 2907 76 5 35 chr3 38922402 38922797 -120676986 + L1_Mus3 LINE L1 6250 6632 -6 5 881 1403 140 9 0 chr3 38923047 38923269 -120676514 + BGLII LTR ERVK 194 417 -4 5 881 1700 81 12 8 chr3 38923265 38923515 -120676268 - BGLII LTR ERVK -170 251 1 5 881 4724 56 0 9 chr3 38923967 38924529 -120675254 - L1Md_F2 LINE L1 -10 6572 6016 5 110 34006 73 1 16 chr3 38924733 38929837 -120669946 + L1Md_F2 LINE L1 563 5586 -297 5 882 8536 50 1 4 chr3 38929837 38930862 -120668921 + L1Md_F2 LINE L1 5587 6582 0 5 882 2940 174 27 16 chr3 38930993 38931543 -120668240 - Lx3C LINE L1 -222 6754 6199 5 882 513 242 117 6 chr3 38931540 38931719 -120668064 + Lx2B LINE L1 6800 6998 -2 5 882 443 287 8 32 chr3 38932255 38932381 -120667402 - RSINE1 SINE B4 0 165 43 5 882 447 19 0 0 chr3 38932589 38932641 -120667142 + (CA)n Simple_repeat Simple_repeat 1 52 0 5 882 279 0 0 0 chr3 38932641 38932671 -120667112 + (GA)n Simple_repeat Simple_repeat 2 32 0 5 882 1056 90 0 0 chr3 38932671 38932837 -120666946 + (CA)n Simple_repeat Simple_repeat 2 168 0 5 882 235 262 66 0 chr3 38933580 38933641 -120666142 + B4 SINE B4 2 66 -226 5 882 438 238 19 9 chr3 38933694 38933800 -120665983 + B4 SINE B4 186 292 0 5 882 206 263 0 10 chr3 38933869 38933965 -120665818 + (CATATA)n Simple_repeat Simple_repeat 4 98 0 5 882 306 73 0 0 chr3 38933998 38934039 -120665744 + (CA)n Simple_repeat Simple_repeat 2 42 0 5 882 517 299 109 92 chr3 38934097 38934533 -120665250 - RMER20B LTR ERVK -89 427 3 5 882 1046 234 24 0 chr3 38935777 38935986 -120663797 - B3 SINE B2 0 216 3 5 882 841 28 0 19 chr3 38937410 38937518 -120662265 + B1_Mm SINE Alu 42 147 0 5 882 198 167 0 0 chr3 38937519 38937555 -120662228 + A-rich Low_complexity Low_complexity 1 36 0 5 882 276 325 159 51 chr3 38937590 38937804 -120661979 + B4A SINE B4 52 288 -4 5 882 216 97 0 0 chr3 38938330 38938361 -120661422 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 5 882 8249 41 3 2 chr3 38938867 38940098 -120659685 - L1Md_F2 LINE L1 0 6582 5352 5 882 288 115 0 161 chr3 38940098 38940160 -120659623 + U2 snRNA snRNA 4 55 -133 5 882 827 324 47 83 chr3 38940223 38940473 -120659310 - MLT1D LTR MaLR -1 504 276 5 882 937 232 23 19 chr3 38940473 38940688 -120659095 - B3 SINE B2 0 216 1 5 882 827 324 47 83 chr3 38940688 38940905 -120658878 - MLT1D LTR MaLR -230 275 54 5 882 385 338 62 98 chr3 38943303 38943641 -120656142 + ORR1E LTR MaLR 3 328 -31 5 882 23 0 0 0 chr3 38945474 38945497 -120654286 + AT_rich Low_complexity Low_complexity 1 23 0 5 882 414 0 0 0 chr3 38946033 38946079 -120653704 + (TG)n Simple_repeat Simple_repeat 2 47 0 5 882 270 304 24 37 chr3 38948911 38948993 -120650790 - ID4_ SINE ID -1 82 2 5 882 222 291 106 53 chr3 38949217 38949424 -120650359 - L2 LINE L2 -570 2849 2632 5 882 757 302 0 29 chr3 38950643 38950868 -120648915 - B3A SINE B2 -4 212 1 5 882 25 31 0 0 chr3 38951794 38951826 -120647957 + AT_rich Low_complexity Low_complexity 1 32 0 5 882 432 0 0 0 chr3 38952764 38952812 -120646971 + (TCTA)n Simple_repeat Simple_repeat 2 49 0 5 882 657 287 0 0 chr3 38953357 38953500 -120646283 + B3A SINE B2 1 143 -55 5 882 450 261 155 42 chr3 38953783 38953951 -120645832 + MLT1A LTR MaLR 5 191 -174 5 882 741 259 28 8 chr3 38956440 38956638 -120643145 - B3A SINE B2 -12 204 3 5 882 596 14 14 0 chr3 38958251 38958324 -120641459 + (TCTA)n Simple_repeat Simple_repeat 4 77 0 5 882 459 157 0 0 chr3 38958340 38958429 -120641354 + (TG)n Simple_repeat Simple_repeat 2 90 0 6 882 10193 95 12 4 chr3 38958972 38960405 -120639378 + Lx3_Mus LINE L1 5556 7001 -8 6 882 1130 59 12 41 chr3 38960421 38960763 -120639020 + (GGA)n Simple_repeat Simple_repeat 1 331 0 6 882 594 0 0 0 chr3 38960862 38960928 -120638855 + (GA)n Simple_repeat Simple_repeat 1 66 0 6 882 563 285 20 75 chr3 38962191 38962392 -120637391 + B3A SINE B2 5 194 -4 6 882 199 68 43 43 chr3 38962394 38962402 -120637381 + (CAAA)n Simple_repeat Simple_repeat 3 10 0 6 882 1264 48 7 0 chr3 38962402 38962549 -120637234 + B1_Mus1 SINE Alu 1 148 0 6 882 199 68 43 43 chr3 38962549 38962586 -120637197 + (CAAA)n Simple_repeat Simple_repeat 3 40 0 6 882 3064 27 117 0 chr3 38963095 38963463 -120636320 - IAPLTR2a LTR ERVK 0 411 1 6 882 3445 21 36 16 chr3 38963580 38963968 -120635815 - MTA_Mm LTR MaLR 0 396 1 6 882 303 96 0 0 chr3 38965675 38965727 -120634056 + (CAAA)n Simple_repeat Simple_repeat 1 52 0 6 882 267 103 0 0 chr3 38967542 38967581 -120632202 + (TG)n Simple_repeat Simple_repeat 2 40 0 6 882 237 387 63 21 chr3 38967661 38967851 -120631932 - L2a LINE L2 -292 3134 2937 6 882 1019 134 6 0 chr3 38968755 38968934 -120630849 + (TCCCC)n Simple_repeat Simple_repeat 1 180 0 6 882 304 309 146 7 chr3 38968934 38969071 -120630712 - HAL1-3A_ME LINE L1 -419 2439 2284 6 882 424 287 35 14 chr3 38969231 38969376 -120630407 - RMER5 LTR ERV1 -18 516 369 6 882 1251 36 0 0 chr3 38969408 38969545 -120630238 + B1_Mus1 SINE Alu 5 141 -7 6 882 355 19 0 37 chr3 38969548 38969602 -120630181 + (CAAA)n Simple_repeat Simple_repeat 2 53 0 6 882 341 317 67 82 chr3 38970403 38970537 -120629246 + RSINE1 SINE B4 34 165 0 6 882 438 119 0 0 chr3 38970545 38970629 -120629154 + (GA)n Simple_repeat Simple_repeat 1 84 0 6 882 2325 239 80 108 chr3 38971256 38972107 -120627676 + RMER17B LTR ERVK 1 827 -131 6 882 527 229 67 0 chr3 38973011 38973116 -120626667 - B3 SINE B2 -97 119 8 6 882 9261 131 34 6 chr3 38973164 38974130 -120625653 + Lx2 LINE L1 5386 6381 -616 6 882 198 0 0 0 chr3 38974130 38974152 -120625631 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 6 882 9261 121 26 8 chr3 38974152 38974774 -120625009 + Lx2 LINE L1 6382 6996 -1 6 882 3226 66 5 25 chr3 38974903 38975307 -120624476 - MTA_Mm LTR MaLR 0 396 1 6 882 1152 147 147 0 chr3 38975729 38975926 -120623857 + URR1A DNA MER1_type 1 226 0 6 882 255 355 119 76 chr3 38975985 38976287 -120623496 - ORR1E LTR MaLR -42 317 3 6 882 225 286 119 0 chr3 38976793 38976877 -120622906 + MLT1B LTR MaLR 2 95 -372 6 882 4664 96 24 2 chr3 38976877 38977491 -120622292 + Lx3_Mus LINE L1 6374 7001 -8 6 882 471 340 74 42 chr3 38977501 38977811 -120621972 + MLT1B LTR MaLR 64 383 -7 6 882 318 307 56 11 chr3 38977818 38977986 -120621797 + L1MD LINE L1 5403 5568 -594 6 882 805 272 101 31 chr3 38980071 38980329 -120619454 - B4A SINE B4 -4 288 13 6 882 1221 300 18 31 chr3 38980869 38981251 -120618532 + MTE2a LTR MaLR 1 377 -2 6 882 1196 293 63 13 chr3 38981254 38981634 -120618149 + MTE2a-int LTR MaLR 3 401 -1179 6 882 2304 277 155 16 chr3 38981702 38982516 -120617267 + MTE2a-int LTR MaLR 654 1580 0 6 882 297 51 0 0 chr3 38982553 38982592 -120617191 + (CACAT)n Simple_repeat Simple_repeat 1 39 0 6 882 730 237 118 6 chr3 38982606 38982784 -120616999 - B3 SINE B2 -15 201 4 6 882 354 260 60 0 chr3 38982786 38982886 -120616897 + MTE2b LTR MaLR 9 114 -265 6 882 1654 168 77 71 chr3 38982897 38983262 -120616521 - ORR1B2 LTR MaLR 0 367 1 6 882 183 205 0 0 chr3 38983330 38983369 -120616414 + CT-rich Low_complexity Low_complexity 2 40 0 6 882 467 267 153 27 chr3 38983379 38983529 -120616254 - B3A SINE B2 -28 170 2 6 882 916 323 70 21 chr3 38983740 38984123 -120615660 + MTD LTR MaLR 18 419 0 6 882 250 24 47 23 chr3 38985051 38985094 -120614689 + (CAAA)n Simple_repeat Simple_repeat 2 45 0 6 882 2189 297 84 12 chr3 38986664 38987483 -120612300 - Lx8 LINE L1 -121 7352 6475 6 882 224 269 30 0 chr3 38987694 38987761 -120612022 + L2a LINE L2 3349 3417 -9 6 882 289 274 84 9 chr3 38988223 38988330 -120611453 - BC1_Mm scRNA scRNA -36 116 2 6 882 453 19 0 0 chr3 38988571 38988625 -120611158 + (CACAT)n Simple_repeat Simple_repeat 5 58 0 6 882 616 297 69 4 chr3 38989257 38989490 -120610293 + Lx7 LINE L1 5625 5872 -1824 6 882 476 333 28 14 chr3 38989550 38989693 -120610090 - RSINE1 SINE B4 -4 161 17 6 882 220 255 0 0 chr3 38990762 38990813 -120608970 + CT-rich Low_complexity Low_complexity 3 53 0 6 882 718 287 125 52 chr3 38990952 38991257 -120608526 - Lx8 LINE L1 -138 7335 7009 6 882 573 298 131 67 chr3 38991293 38991670 -120608113 + RLTR12B LTR ERVK 47 453 -75 6 882 2426 114 3 18 chr3 38991670 38992001 -120607782 + ORR1A2 LTR MaLR 1 326 -1 6 882 573 298 131 67 chr3 38992001 38992044 -120607739 + RLTR12B LTR ERVK 454 494 -34 6 882 1496 306 109 26 chr3 38992112 38992772 -120607011 - Lx8 LINE L1 -461 7012 6298 6 882 233 200 31 0 chr3 38994332 38994397 -120605386 + A-rich Low_complexity Low_complexity 2 68 0 6 882 823 188 7 0 chr3 38994670 38994814 -120604969 - Lx3C LINE L1 -117 6859 6715 6 882 27 0 0 0 chr3 38994865 38994892 -120604891 + AT_rich Low_complexity Low_complexity 1 27 0 6 882 508 185 0 11 chr3 38995338 38995431 -120604352 - MTC LTR MaLR 0 421 330 6 882 989 220 38 33 chr3 38995444 38995684 -120604099 - MTC LTR MaLR -180 241 1 6 882 346 108 31 0 chr3 38997595 38997660 -120602123 + (TC)n Simple_repeat Simple_repeat 2 68 0 6 882 21 57 0 0 chr3 38998240 38998275 -120601508 + AT_rich Low_complexity Low_complexity 1 35 0 6 882 7020 87 19 15 chr3 38998517 38999148 -120600635 - L1_Mus4 LINE L1 -7 6629 6006 6 882 2271 132 0 3 chr3 38999148 38999460 -120600323 - RLTR10E LTR ERVK 0 311 1 6 882 7020 87 19 15 chr3 38999460 38999813 -120599970 - L1_Mus4 LINE L1 -631 6005 5641 6 882 436 279 204 0 chr3 39000476 39000648 -120599135 - Lx8 LINE L1 -346 7127 6921 1 882 237 345 0 11 chr3 39001895 39001983 -120597800 + B4A SINE B4 202 288 -4 2 882 2066 209 178 15 chr3 39002066 39002672 -120597111 + RMER1B Other Other 359 1063 -3 3 882 945 289 42 38 chr3 39003221 39003509 -120596274 - B4 SINE B4 0 292 4 4 882 22 35 0 0 chr3 39003817 39003846 -120595937 + AT_rich Low_complexity Low_complexity 1 29 0 5 882 893 293 83 13 chr3 39004526 39004843 -120594940 - ORR1E LTR MaLR 0 421 22 6 882 267 79 0 0 chr3 39006016 39006054 -120593729 + (TTTC)n Simple_repeat Simple_repeat 3 40 0 7 882 23 0 0 0 chr3 39006210 39006233 -120593550 + AT_rich Low_complexity Low_complexity 1 23 0 8 882 653 279 144 0 chr3 39006362 39006591 -120593192 + B4 SINE B4 2 263 -29 9 882 471 63 0 0 chr3 39006599 39006662 -120593121 + (CA)n Simple_repeat Simple_repeat 1 63 0 1 882 327 49 0 0 chr3 39007521 39007562 -120592221 + (TTTG)n Simple_repeat Simple_repeat 2 42 0 1 882 593 276 72 15 chr3 39007564 39007759 -120592024 - ID_B1 SINE B4 -3 221 16 1 882 315 204 24 2 chr3 39008533 39008600 -120591183 - B4A SINE B4 -91 74 2 1 882 25 0 0 0 chr3 39008983 39009008 -120590775 + AT_rich Low_complexity Low_complexity 1 25 0 1 882 596 308 86 30 chr3 39009536 39009804 -120589979 - B4A SINE B4 -7 285 3 1 882 564 273 79 34 chr3 39010306 39010484 -120589299 + B3A SINE B2 9 194 -4 1 882 291 287 0 22 chr3 39010495 39010584 -120589199 + CT-rich Low_complexity Low_complexity 3 89 0 1 882 213 269 30 0 chr3 39011276 39011343 -120588440 + (TATATG)n Simple_repeat Simple_repeat 2 70 0 1 882 219 36 0 0 chr3 39011360 39011388 -120588395 + (TG)n Simple_repeat Simple_repeat 2 29 0 1 882 257 263 0 0 chr3 39011516 39011573 -120588210 - B4 SINE B4 -233 59 3 2 882 203 310 20 40 chr3 39013395 39013543 -120586240 + (TG)n Simple_repeat Simple_repeat 2 146 0 2 882 528 93 0 0 chr3 39014142 39014217 -120585566 + (TC)n Simple_repeat Simple_repeat 2 76 0 2 882 219 88 0 0 chr3 39014395 39014429 -120585354 + (T)n Simple_repeat Simple_repeat 1 34 0 2 882 3059 73 8 0 chr3 39014443 39014840 -120584943 + MTB LTR MaLR 1 400 0 2 882 1725 166 104 18 chr3 39014840 39015168 -120584615 - ORR1B1 LTR MaLR -7 387 29 2 882 314 261 21 67 chr3 39015171 39015364 -120584419 - L1MA7 LINE L1 -9 6282 6099 2 882 2064 184 24 8 chr3 39015807 39016185 -120583598 - ORR1C2 LTR MaLR 0 384 1 2 882 397 268 0 10 chr3 39016949 39017047 -120582736 - Lx8 LINE L1 -223 7250 7154 2 882 207 227 11 43 chr3 39019123 39019215 -120580568 + (TA)n Simple_repeat Simple_repeat 2 90 0 2 882 1269 61 0 6 chr3 39019702 39019866 -120579917 + B2_Mm2 SINE B2 2 164 -31 3 882 192 135 0 0 chr3 39020168 39020205 -120579578 + (TTTTG)n Simple_repeat Simple_repeat 4 40 0 3 882 22 0 0 0 chr3 39020306 39020328 -120579455 + AT_rich Low_complexity Low_complexity 1 22 0 3 882 587 292 32 111 chr3 39020398 39020614 -120579169 + B4A SINE B4 87 285 -7 3 882 285 63 30 45 chr3 39020782 39020848 -120578935 + (TTTTTG)n Simple_repeat Simple_repeat 2 66 0 3 882 234 0 0 0 chr3 39021200 39021226 -120578557 + (CA)n Simple_repeat Simple_repeat 2 27 0 3 882 180 216 77 19 chr3 39021981 39022033 -120577750 + L3 LINE CR1 2159 2213 -2276 3 882 4940 149 39 2 chr3 39022113 39022272 -120577511 + L1_Mur2 LINE L1 4945 5104 -773 3 882 3430 23 5 0 chr3 39022272 39022666 -120577117 + MTA_Mm LTR MaLR 1 396 0 3 882 4940 149 39 2 chr3 39022666 39023406 -120576377 + L1_Mur2 LINE L1 5105 5877 0 3 882 3176 204 20 7 chr3 39023412 39024024 -120575759 + Lx5 LINE L1 6428 7047 -3 3 882 1461 233 86 78 chr3 39024676 39024697 -120575086 + RMER19C LTR ERVK 2 22 -589 4 882 315 0 0 0 chr3 39024697 39024732 -120575051 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 4 882 1461 233 86 78 chr3 39024732 39025315 -120574468 + RMER19C LTR ERVK 23 611 0 4 882 342 290 52 31 chr3 39025741 39025837 -120573946 + RSINE1 SINE B4 3 100 -65 4 882 772 254 26 52 chr3 39025833 39026024 -120573759 + RMER19C LTR ERVK 152 337 -274 4 882 398 120 13 0 chr3 39026078 39026153 -120573630 + (TG)n Simple_repeat Simple_repeat 2 77 0 4 882 330 254 0 0 chr3 39026231 39026341 -120573442 + CT-rich Low_complexity Low_complexity 1 110 0 4 882 736 351 54 22 chr3 39026367 39026644 -120573139 - B4 SINE B4 -2 290 5 4 882 995 175 64 0 chr3 39028188 39028359 -120571424 - URR1B DNA MER1_type -43 182 1 4 882 382 302 63 34 chr3 39028359 39028393 -120571390 + CYRA11_Mm Unknown Y-chromosome 218 428 -189 4 882 583 267 24 36 chr3 39028677 39028844 -120570939 - RSINE1 SINE B4 0 165 1 4 882 510 17 0 0 chr3 39029013 39029072 -120570711 + (CA)n Simple_repeat Simple_repeat 1 59 0 5 882 730 286 173 13 chr3 39029352 39029653 -120570130 + ORR1E LTR MaLR 4 352 -7 5 882 1056 72 0 0 chr3 39031860 39031998 -120567785 + B1_Mus1 SINE Alu 10 147 -1 5 882 340 152 17 0 chr3 39032391 39032450 -120567333 - MTD LTR MaLR 0 419 360 5 882 384 22 0 0 chr3 39032454 39032499 -120567284 + (TTCC)n Simple_repeat Simple_repeat 1 45 0 5 882 566 159 9 0 chr3 39032501 39032608 -120567175 + CT-rich Low_complexity Low_complexity 3 110 0 5 882 222 152 51 0 chr3 39033795 39033854 -120565929 + GA-rich Low_complexity Low_complexity 1 62 0 5 882 583 271 132 68 chr3 39033919 39034299 -120565484 + Lx8 LINE L1 7001 7404 -69 5 882 245 182 0 18 chr3 39036048 39036104 -120563679 + CT-rich Low_complexity Low_complexity 1 55 0 5 882 1113 102 0 0 chr3 39036120 39036286 -120563497 + (TTCC)n Simple_repeat Simple_repeat 3 168 0 5 882 447 126 10 21 chr3 39036799 39036896 -120562887 + A-rich Low_complexity Low_complexity 3 98 0 6 882 1236 331 51 19 chr3 39036979 39037601 -120562182 - Lx8 LINE L1 -155 7318 6677 6 882 435 211 53 0 chr3 39037637 39037770 -120562013 - Lx9 LINE L1 0 7644 7505 6 882 228 164 45 0 chr3 39037828 39037895 -120561888 + (TG)n Simple_repeat Simple_repeat 1 70 0 6 882 1951 284 78 45 chr3 39037924 39038478 -120561305 - Lx8 LINE L1 -908 6565 5997 6 882 1468 212 141 62 chr3 39038478 39038966 -120560817 - RLTR11A2 LTR ERVK 0 527 1 6 882 1951 270 49 29 chr3 39038966 39039547 -120560236 - Lx8 LINE L1 -1477 5996 5394 6 882 282 105 0 0 chr3 39040053 39040091 -120559692 + (GA)n Simple_repeat Simple_repeat 2 39 0 6 882 973 150 0 11 chr3 39040091 39040273 -120559510 + GA-rich Low_complexity Low_complexity 1 180 0 6 882 646 316 121 13 chr3 39040479 39040739 -120559044 - B4 SINE B4 -3 289 2 6 882 201 74 0 0 chr3 39040976 39041003 -120558780 + (GGA)n Simple_repeat Simple_repeat 3 29 0 6 882 198 0 0 0 chr3 39041187 39041209 -120558574 + (A)n Simple_repeat Simple_repeat 1 22 0 6 882 266 297 100 40 chr3 39041862 39042075 -120557708 + RMER4A LTR ERVK 7 224 -361 7 882 990 104 6 12 chr3 39042327 39042492 -120557291 + (TTTC)n Simple_repeat Simple_repeat 1 164 0 7 882 202 222 0 0 chr3 39042493 39042529 -120557254 + polypyrimidine Low_complexity Low_complexity 2 37 0 7 882 751 122 93 47 chr3 39042537 39042666 -120557117 - B1_Mur4 SINE Alu -6 144 10 7 882 379 70 17 50 chr3 39043183 39043223 -120556560 - HAL1-3A_ME LINE L1 -825 2033 1993 7 882 1431 50 0 0 chr3 39043223 39043403 -120556380 + (TG)n Simple_repeat Simple_repeat 1 180 0 7 882 379 70 17 50 chr3 39043403 39043422 -120556361 - HAL1-3A_ME LINE L1 -866 1992 1976 7 882 189 0 0 0 chr3 39043422 39043443 -120556340 + (GA)n Simple_repeat Simple_repeat 1 21 0 7 882 319 224 30 0 chr3 39043813 39043880 -120555903 + HAL1-3A_ME LINE L1 1962 2030 -828 7 882 875 19 0 0 chr3 39044570 39044673 -120555110 + L1Md_T LINE L1 5484 5586 -297 7 882 9028 5 0 0 chr3 39044673 39045669 -120554114 + L1Md_T LINE L1 5587 6582 0 7 882 243 0 0 0 chr3 39045672 39045699 -120554084 + (A)n Simple_repeat Simple_repeat 1 27 0 7 882 488 353 53 64 chr3 39045699 39046074 -120553709 - LTR16A LTR ERVL -80 371 1 8 882 23 0 0 0 chr3 39046196 39046219 -120553564 + AT_rich Low_complexity Low_complexity 1 23 0 8 882 411 21 0 0 chr3 39046223 39046271 -120553512 + (TC)n Simple_repeat Simple_repeat 2 49 0 8 882 351 0 0 0 chr3 39046271 39046309 -120553474 + (TG)n Simple_repeat Simple_repeat 2 40 0 8 882 464 404 0 6 chr3 39046313 39046475 -120553308 - B3A SINE B2 -32 166 6 8 882 275 242 59 29 chr3 39047709 39047811 -120551972 + MMETn-int LTR ERVK 4366 4470 -374 8 882 330 220 30 0 chr3 39049411 39049511 -120550272 - L1MA5 LINE L1 -439 5861 5759 8 882 419 289 45 41 chr3 39049512 39049672 -120550111 + B3A SINE B2 65 216 0 8 882 241 209 96 27 chr3 39049790 39049879 -120549904 - B1_Mur2 SINE Alu 0 149 30 8 882 203 234 45 30 chr3 39049975 39050041 -120549742 + MIRb SINE MIR 154 220 -48 8 882 1302 245 118 0 chr3 39050867 39051214 -120548569 - MTD LTR MaLR -14 405 18 9 882 232 239 141 0 chr3 39052355 39052426 -120547357 - PB1D10 SINE Alu -31 86 6 9 882 226 349 70 51 chr3 39053945 39054102 -120545681 + MER5A1 DNA MER1_type 2 161 -5 9 882 513 0 0 0 chr3 39054349 39054406 -120545377 + (TC)n Simple_repeat Simple_repeat 2 58 0 9 882 480 18 0 0 chr3 39054406 39054462 -120545321 + (TG)n Simple_repeat Simple_repeat 2 58 0 9 882 879 326 59 7 chr3 39055323 39055595 -120544188 - B4 SINE B4 -5 287 2 9 882 628 301 109 51 chr3 39056524 39056800 -120542983 + B4A SINE B4 1 292 0 9 882 450 234 0 0 chr3 39056803 39056978 -120542805 + (CA)n Simple_repeat Simple_repeat 2 176 0 9 882 459 237 0 0 chr3 39057020 39057197 -120542586 + (CA)n Simple_repeat Simple_repeat 2 178 0 9 882 510 17 0 0 chr3 39057285 39057344 -120542439 + (TC)n Simple_repeat Simple_repeat 1 59 0 9 882 414 0 0 0 chr3 39057344 39057389 -120542394 + (CA)n Simple_repeat Simple_repeat 1 46 0 9 882 775 298 5 32 chr3 39057799 39057986 -120541797 + B3A SINE B2 1 182 -16 1 882 207 170 0 0 chr3 39058010 39058057 -120541726 + (TAAA)n Simple_repeat Simple_repeat 1 47 0 1 882 700 301 32 5 chr3 39059120 39059337 -120540446 - ID_B1 SINE B4 0 224 2 1 883 1224 242 168 9 chr3 39059644 39059990 -120539793 - Lx2B LINE L1 -5 6995 6595 1 883 936 170 29 23 chr3 39059995 39060170 -120539613 + Lx3C LINE L1 6409 6584 -392 1 883 585 333 41 33 chr3 39060351 39060596 -120539187 - Lx8 LINE L1 -121 7352 7106 1 883 5887 61 0 11 chr3 39060667 39061376 -120538407 - L1Md_F2 LINE L1 -3 6579 5879 1 883 5762 77 0 0 chr3 39061376 39062134 -120537649 + L1_Mm LINE L1 2754 3511 -2372 1 883 303 341 100 26 chr3 39064874 39065064 -120534719 + L1MC LINE L1 5352 5555 -2230 1 883 573 333 58 65 chr3 39065224 39065500 -120534283 + B4A SINE B4 6 279 -13 1 883 513 200 104 28 chr3 39065707 39065851 -120533932 + L1MC3 LINE L1 7353 7507 -278 1 883 409 179 33 40 chr3 39067215 39067366 -120532417 + GA-rich Low_complexity Low_complexity 1 150 0 1 883 21 71 0 0 chr3 39067600 39067642 -120532141 + AT_rich Low_complexity Low_complexity 1 42 0 1 883 816 40 0 0 chr3 39070994 39071094 -120528689 + (CA)n Simple_repeat Simple_repeat 1 100 0 1 883 608 257 233 4 chr3 39071165 39071423 -120528360 - Lx8 LINE L1 -2 7471 7155 1 883 694 286 25 5 chr3 39071539 39071736 -120528047 + B3 SINE B2 5 205 -11 1 883 2993 90 25 15 chr3 39072899 39073306 -120526477 + RLTR10A LTR ERVK 1 411 0 1 883 1598 108 24 28 chr3 39073308 39073555 -120526228 + RLTR10-int LTR ERVK 304 549 -1438 1 883 356 345 31 25 chr3 39073597 39073918 -120525865 + RLTR10-int LTR ERVK 203 525 -6017 1 883 1080 128 21 38 chr3 39074012 39074198 -120525585 + RLTR10-int LTR ERVK 810 992 -995 1 883 5151 312 48 38 chr3 39074338 39077574 -120522209 + IAP-d-int LTR ERVK 822 4088 -2454 1 883 2040 231 37 48 chr3 39077693 39078688 -120521095 + IAP-d-int LTR ERVK 983 1277 -710 1 883 4739 103 45 19 chr3 39078796 39079491 -120520292 + IAP-d-int LTR ERVK 1274 1986 -1 1 883 2982 86 40 5 chr3 39079491 39079888 -120519895 + RLTR10A LTR ERVK 1 411 0 1 883 290 252 75 0 chr3 39080950 39081057 -120518726 + MER57D LTR ERV1 293 407 -4 1 883 32 0 0 0 chr3 39082116 39082148 -120517635 + AT_rich Low_complexity Low_complexity 1 32 0 1 883 38779 30 0 1 chr3 39082201 39088753 -120511030 - L1Md_T LINE L1 0 6585 1 1 883 423 0 0 0 chr3 39089288 39089335 -120510448 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 883 599 234 14 34 chr3 39089343 39089489 -120510294 - B1_Mus2 SINE Alu -2 145 3 1 883 491 0 17 0 chr3 39090083 39090142 -120509641 + (CA)n Simple_repeat Simple_repeat 2 61 0 1 883 1298 283 91 14 chr3 39090155 39090582 -120509201 - Lx8 LINE L1 -19 7454 6995 1 883 535 224 0 18 chr3 39091425 39091534 -120508249 + B1_Mur1 SINE Alu 35 141 -8 1 883 768 309 84 42 chr3 39091951 39092285 -120507498 + ORR1E LTR MaLR 8 355 -4 1 883 2220 203 19 75 chr3 39093492 39094029 -120505754 - RLTR20B3 LTR ERVK -56 521 15 1 883 399 288 121 36 chr3 39094841 39095133 -120504650 + MLT1B LTR MaLR 8 355 -35 1 883 230 95 24 0 chr3 39095893 39095935 -120503848 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 883 261 0 0 0 chr3 39095935 39095963 -120503820 + (GA)n Simple_repeat Simple_repeat 2 30 0 1 883 517 283 129 29 chr3 39096122 39096293 -120503490 - B3A SINE B2 -10 188 1 1 883 524 282 93 63 chr3 39096735 39097004 -120502779 - B4 SINE B4 -13 279 3 1 883 1245 68 0 0 chr3 39097759 39097905 -120501878 + B1_Mm SINE Alu 2 147 0 1 883 234 136 0 0 chr3 39097909 39097953 -120501830 + (A)n Simple_repeat Simple_repeat 1 44 0 1 883 293 278 8 115 chr3 39098549 39098671 -120501112 - B4A SINE B4 0 292 184 1 883 241 288 25 0 chr3 39099205 39099285 -120500498 + GA-rich Low_complexity Low_complexity 2 83 0 1 883 211 364 66 8 chr3 39099380 39099502 -120500281 + MIR SINE MIR 110 238 -24 1 883 680 358 14 18 chr3 39100747 39101023 -120498760 + B4A SINE B4 1 275 -17 1 883 271 33 48 48 chr3 39101038 39101101 -120498682 + (GGGA)n Simple_repeat Simple_repeat 2 64 0 1 883 206 314 19 0 chr3 39101103 39101208 -120498575 + GA-rich Low_complexity Low_complexity 1 107 0 1 883 213 273 0 13 chr3 39101104 39101182 -120498601 + (CAGAGA)n Simple_repeat Simple_repeat 2 78 0 1 883 444 272 118 38 chr3 39102432 39102669 -120497114 + Lx8 LINE L1 7216 7471 -2 1 883 2913 227 55 43 chr3 39102697 39103316 -120496467 + RMER1C Other Other 592 1218 -124 1 883 699 12 0 0 chr3 39103316 39103396 -120496387 + (TTC)n Simple_repeat Simple_repeat 2 81 0 1 883 2913 227 55 43 chr3 39103396 39103517 -120496266 + RMER1C Other Other 1219 1341 -1 1 883 198 0 0 0 chr3 39103539 39103561 -120496222 + (CAA)n Simple_repeat Simple_repeat 3 24 0 1 883 22 56 0 0 chr3 39103573 39103609 -120496174 + AT_rich Low_complexity Low_complexity 1 36 0 1 883 385 301 8 8 chr3 39104091 39104215 -120495568 - Lx8 LINE L1 -1559 5914 5791 1 883 1249 55 0 7 chr3 39104215 39104362 -120495421 + B1_Mm SINE Alu 2 147 0 1 883 552 15 0 0 chr3 39104508 39104573 -120495210 + (TCTA)n Simple_repeat Simple_repeat 4 68 0 1 883 396 0 0 0 chr3 39105428 39105472 -120494311 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 1 883 1112 88 0 0 chr3 39105472 39105608 -120494175 - B1_Mm SINE Alu -10 137 2 1 883 480 257 90 69 chr3 39106010 39106198 -120493585 - MTE2a LTR MaLR -39 340 149 1 883 213 39 0 0 chr3 39109158 39109184 -120490599 + (GGA)n Simple_repeat Simple_repeat 2 27 0 1 883 192 77 0 0 chr3 39109190 39109216 -120490567 + (TATATG)n Simple_repeat Simple_repeat 6 31 0 1 883 480 268 81 174 chr3 39109292 39109590 -120490193 - B4A SINE B4 -14 278 9 1 883 207 206 0 0 chr3 39109602 39109636 -120490147 - L2a LINE L2 -43 3383 3350 1 883 499 267 45 2 chr3 39109656 39109818 -120489965 + B3 SINE B2 6 184 -32 1 883 289 253 155 21 chr3 39109893 39109990 -120489793 - PB1D10 SINE Alu -7 110 1 1 883 284 295 56 28 chr3 39109990 39110041 -120489742 - B4A SINE B4 -208 84 31 1 883 326 282 0 0 chr3 39111350 39111421 -120488362 - ID4_ SINE ID -12 71 1 1 883 1685 244 37 32 chr3 39112220 39112232 -120487551 + MTD LTR MaLR 2 13 -406 1 883 201 74 0 0 chr3 39112232 39112259 -120487524 + (TTG)n Simple_repeat Simple_repeat 1 27 0 1 883 1685 244 37 32 chr3 39112259 39112648 -120487135 + MTD LTR MaLR 14 405 -14 1 883 414 0 0 0 chr3 39113364 39113410 -120486373 + (TG)n Simple_repeat Simple_repeat 2 47 0 1 883 365 241 67 22 chr3 39113424 39113513 -120486270 - B4 SINE B4 -23 269 177 1 883 566 325 90 78 chr3 39113523 39113585 -120486198 + MTE2a LTR MaLR 13 72 -349 1 883 1781 174 40 23 chr3 39113585 39113938 -120485845 + RLTR15 LTR ERVK 1 359 0 1 883 610 296 83 68 chr3 39113938 39114275 -120485508 + MTE2a LTR MaLR 60 404 -17 1 883 447 328 21 65 chr3 39114268 39114454 -120485329 - B4 SINE B4 -99 193 16 1 883 2518 207 59 48 chr3 39114738 39115398 -120484385 - RMER6C LTR ERVK -15 675 9 1 883 279 0 0 0 chr3 39115833 39115864 -120483919 + (TG)n Simple_repeat Simple_repeat 2 32 0 1 883 3106 16 0 8 chr3 39117053 39117065 -120482718 + L1Md_T LINE L1 5208 5217 -666 1 883 941 25 17 0 chr3 39117065 39117184 -120482599 + (GAAA)n Simple_repeat Simple_repeat 2 122 0 1 883 3106 16 0 8 chr3 39117184 39117553 -120482230 + L1Md_T LINE L1 5218 5586 -297 1 883 9034 5 0 0 chr3 39117553 39118549 -120481234 + L1Md_T LINE L1 5587 6582 0 1 883 681 13 0 0 chr3 39118558 39118636 -120481147 + (GAAA)n Simple_repeat Simple_repeat 2 79 0 1 883 767 189 22 7 chr3 39120237 39120376 -120479407 + B3 SINE B2 1 141 -75 1 883 355 165 12 12 chr3 39120376 39120462 -120479321 + CT-rich Low_complexity Low_complexity 2 87 0 1 883 219 170 0 0 chr3 39121759 39121806 -120477977 + (CAGTC)n Simple_repeat Simple_repeat 1 47 0 1 883 283 231 44 0 chr3 39122589 39122680 -120477103 - Lx9 LINE L1 -30 7614 7520 1 883 573 254 15 30 chr3 39122793 39122927 -120476856 - B3A SINE B2 -66 132 1 1 883 720 300 100 0 chr3 39123057 39123247 -120476536 + ID_B1 SINE B4 6 214 -10 1 883 629 194 14 0 chr3 39123965 39124104 -120475679 + (TATATG)n Simple_repeat Simple_repeat 6 146 0 1 883 1536 224 66 36 chr3 39124438 39124803 -120474980 + ORR1C2 LTR MaLR 1 376 -8 1 883 316 340 123 41 chr3 39124924 39125289 -120474494 - Charlie1a DNA MER1_type -1059 396 2 1 883 1254 269 82 10 chr3 39125427 39125915 -120473868 + Lx8 LINE L1 6949 7471 -2 1 883 223 282 0 25 chr3 39129463 39129543 -120470240 + CT-rich Low_complexity Low_complexity 1 78 0 1 883 762 269 81 0 chr3 39129938 39130135 -120469648 - B3 SINE B2 0 216 4 1 883 328 306 45 9 chr3 39130657 39130769 -120469014 + ID_B1 SINE B4 91 206 -18 1 883 456 19 0 0 chr3 39130769 39130822 -120468961 + (TG)n Simple_repeat Simple_repeat 2 54 0 1 883 315 85 0 0 chr3 39130852 39130899 -120468884 + (TAGA)n Simple_repeat Simple_repeat 2 48 0 1 883 22 0 0 0 chr3 39131313 39131335 -120468448 + AT_rich Low_complexity Low_complexity 1 22 0 1 883 1130 112 22 22 chr3 39131952 39132135 -120467648 + ORR1B1 LTR MaLR 210 392 -2 1 883 282 171 0 0 chr3 39133504 39133574 -120466209 + GA-rich Low_complexity Low_complexity 1 70 0 1 883 384 147 0 0 chr3 39135825 39135900 -120463883 + (CATA)n Simple_repeat Simple_repeat 2 76 0 1 883 36215 41 2 3 chr3 39136676 39142928 -120456855 - L1Md_T LINE L1 0 6585 244 1 883 240 186 47 0 chr3 39144737 39144780 -120455003 + MLT2B2 LTR ERVL 395 439 -123 1 883 189 246 49 0 chr3 39147226 39147287 -120452496 + L2c LINE L2 3228 3291 -96 1 883 183 129 0 0 chr3 39147360 39147391 -120452392 + (TGAA)n Simple_repeat Simple_repeat 1 31 0 1 883 302 321 21 21 chr3 39147489 39147629 -120452154 - B1F SINE Alu 0 149 10 1 883 575 274 91 0 chr3 39149526 39149723 -120450060 - B3 SINE B2 0 216 2 1 883 329 318 121 43 chr3 39149746 39149953 -120449830 + L1MC4 LINE L1 7378 7600 -442 1 883 1010 154 17 6 chr3 39151099 39151275 -120448508 + B2_Mm1t SINE B2 2 179 -14 1 883 531 0 0 0 chr3 39151397 39151456 -120448327 + (TCTA)n Simple_repeat Simple_repeat 4 62 0 2 883 511 281 214 0 chr3 39151577 39151755 -120448028 - ID_B1 SINE B4 -8 216 1 2 883 342 171 0 0 chr3 39151985 39152055 -120447728 + (CA)n Simple_repeat Simple_repeat 2 71 0 2 883 447 19 0 0 chr3 39152055 39152107 -120447676 + (GA)n Simple_repeat Simple_repeat 2 53 0 2 883 196 94 0 86 chr3 39152652 39152687 -120447096 - L4 LINE RTE -290 1739 1708 2 883 291 136 0 0 chr3 39152988 39153047 -120446736 + (GA)n Simple_repeat Simple_repeat 2 60 0 2 883 342 0 0 0 chr3 39154319 39154357 -120445426 + (TG)n Simple_repeat Simple_repeat 2 39 0 2 883 458 318 0 0 chr3 39154820 39154930 -120444853 + B4A SINE B4 177 286 -6 2 883 462 18 0 0 chr3 39154961 39155016 -120444767 + (CA)n Simple_repeat Simple_repeat 2 56 0 2 883 1708 251 79 20 chr3 39155872 39156322 -120443461 + RLTR20B3 LTR ERVK 1 470 -107 2 883 393 22 0 0 chr3 39156322 39156368 -120443415 + (TG)n Simple_repeat Simple_repeat 2 47 0 2 883 1708 251 79 20 chr3 39156368 39156462 -120443321 + RLTR20B3 LTR ERVK 471 576 -1 2 883 1931 298 15 51 chr3 39156654 39157502 -120442281 - Lx5 LINE L1 0 7050 6316 2 883 3064 226 85 80 chr3 39157502 39158082 -120441701 - RMER17B LTR ERVK 0 958 433 2 883 558 0 0 0 chr3 39158082 39158144 -120441639 + (GA)n Simple_repeat Simple_repeat 1 62 0 2 883 3064 226 85 80 chr3 39158144 39158243 -120441540 - RMER17B LTR ERVK -526 432 307 2 883 558 43 0 0 chr3 39158243 39158312 -120441471 + (GA)n Simple_repeat Simple_repeat 1 69 0 2 883 3064 226 85 80 chr3 39158312 39158584 -120441199 - RMER17B LTR ERVK -652 306 2 2 883 1305 309 63 19 chr3 39158584 39158800 -120440983 - Lx5 LINE L1 -743 6315 6057 2 883 227 233 62 88 chr3 39158796 39158876 -120440907 + Lx6 LINE L1 5933 6010 -1450 2 883 280 347 31 10 chr3 39159583 39159679 -120440104 + MamGypLTR1d LTR Gypsy 347 444 -369 2 883 266 269 13 13 chr3 39159737 39159816 -120439967 + B3A SINE B2 2 80 -118 2 883 1818 180 16 80 chr3 39160813 39161198 -120438585 + ORR1B1 LTR MaLR 1 394 0 2 883 1782 119 27 126 chr3 39161351 39161716 -120438067 - ORR1A4 LTR MaLR 0 329 1 2 883 1848 186 93 0 chr3 39161984 39162338 -120437445 - ORR1B1 LTR MaLR 0 394 8 2 883 6198 194 47 12 chr3 39162345 39163666 -120436117 - ORR1B1-int LTR MaLR 0 1509 143 2 883 342 61 0 0 chr3 39164998 39165047 -120434736 + (TTTTG)n Simple_repeat Simple_repeat 2 50 0 2 883 1111 91 7 0 chr3 39165065 39165208 -120434575 - B1_Mm SINE Alu -2 145 2 2 883 1226 34 0 0 chr3 39165434 39165580 -120434203 + B1_Mm SINE Alu 2 147 0 2 883 183 156 0 0 chr3 39165580 39165612 -120434171 + A-rich Low_complexity Low_complexity 1 32 0 2 883 705 73 0 0 chr3 39166679 39166775 -120433008 + (GA)n Simple_repeat Simple_repeat 2 97 0 2 883 760 299 47 23 chr3 39167271 39167572 -120432211 - RMER5 LTR ERV1 0 534 227 2 883 532 333 67 45 chr3 39167579 39167846 -120431937 - RMER15 LTR ERVL -3 572 300 2 883 2506 153 208 4 chr3 39168246 39168798 -120430985 + RMER6C LTR ERVK 1 665 -25 2 883 452 18 18 0 chr3 39169506 39169563 -120430220 + (TCCA)n Simple_repeat Simple_repeat 3 60 0 2 883 302 219 42 0 chr3 39169567 39169663 -120430120 + (TCTA)n Simple_repeat Simple_repeat 2 101 0 2 883 254 291 9 19 chr3 39169628 39169733 -120430050 + CT-rich Low_complexity Low_complexity 1 104 0 2 883 23 33 0 0 chr3 39171409 39171439 -120428344 + AT_rich Low_complexity Low_complexity 1 30 0 2 883 1467 172 75 39 chr3 39172310 39172643 -120427140 - ORR1B2 LTR MaLR 0 367 23 2 883 219 36 0 0 chr3 39172888 39172916 -120426867 + (CAAAAA)n Simple_repeat Simple_repeat 2 29 0 2 883 23 0 0 0 chr3 39173654 39173677 -120426106 + AT_rich Low_complexity Low_complexity 1 23 0 2 883 3599 245 27 105 chr3 39175687 39177651 -120422132 - RMER1A Other Other -14 1016 1 2 883 23 33 0 0 chr3 39178074 39178104 -120421679 + AT_rich Low_complexity Low_complexity 1 30 0 2 883 357 324 37 0 chr3 39178115 39178251 -120421532 - RSINE1 SINE B4 -22 143 3 2 883 762 93 0 0 chr3 39178279 39178387 -120421396 + (TA)n Simple_repeat Simple_repeat 2 109 0 2 883 241 146 18 35 chr3 39178853 39178867 -120420916 + A-rich Low_complexity Low_complexity 3 15 0 2 883 1162 62 7 0 chr3 39178867 39179013 -120420770 + B1_Mm SINE Alu 1 147 0 2 883 241 146 18 35 chr3 39179013 39179112 -120420671 + A-rich Low_complexity Low_complexity 16 113 0 2 883 194 268 0 0 chr3 39179858 39179899 -120419884 - MIRc SINE MIR -115 153 113 2 883 360 234 0 0 chr3 39180392 39180486 -120419297 + (TA)n Simple_repeat Simple_repeat 1 94 0 2 883 5167 47 1 1 chr3 39180576 39181239 -120418544 - L1Md_F2 LINE L1 -34 5849 5187 2 883 5772 48 0 4 chr3 39181239 39181941 -120417842 + L1Md_F2 LINE L1 5863 6564 -18 2 883 324 0 0 0 chr3 39181941 39181977 -120417806 + (TA)n Simple_repeat Simple_repeat 2 37 0 2 883 244 252 86 19 chr3 39182032 39182137 -120417646 + L1MA4A LINE L1 6051 6162 -141 2 883 3518 191 50 5 chr3 39182337 39183099 -120416684 - Lx9 LINE L1 -1 7643 6848 2 883 7180 172 26 104 chr3 39183993 39185101 -120414682 + RLTR21 LTR ERVK 1 1064 -508 2 883 420 20 0 0 chr3 39185101 39185150 -120414633 + (TG)n Simple_repeat Simple_repeat 2 50 0 2 883 7180 172 26 104 chr3 39185150 39185325 -120414458 + RLTR21 LTR ERVK 1065 1204 -368 2 883 386 81 0 31 chr3 39185325 39185389 -120414394 + (TATG)n Simple_repeat Simple_repeat 1 62 0 2 883 7180 172 26 104 chr3 39185389 39185809 -120413974 + RLTR21 LTR ERVK 1205 1572 0 2 883 30382 124 41 1 chr3 39185923 39187848 -120411935 + L1Md_F2 LINE L1 98 1969 -3914 2 883 269 26 26 0 chr3 39187848 39187886 -120411897 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 2 110 30382 75 8 2 chr3 39187886 39191476 -120408307 + L1Md_F2 LINE L1 1970 5586 -297 2 884 7114 94 4 5 chr3 39191477 39192458 -120407325 + L1Md_F2 LINE L1 5588 6567 -15 2 884 207 104 40 40 chr3 39192502 39192552 -120407231 + CT-rich Low_complexity Low_complexity 1 50 0 2 884 630 309 38 10 chr3 39192553 39192762 -120407021 - ID_B1 SINE B4 -4 220 6 2 884 369 0 0 0 chr3 39193460 39193501 -120406282 + (TTTTA)n Simple_repeat Simple_repeat 5 45 0 2 884 306 211 0 14 chr3 39193704 39193776 -120406007 - RSINE1 SINE B4 0 165 95 2 884 406 258 11 0 chr3 39193815 39193904 -120405879 - RSINE1 SINE B4 -65 100 11 2 884 396 227 0 0 chr3 39193984 39194103 -120405680 + (TG)n Simple_repeat Simple_repeat 2 120 0 2 884 233 53 0 50 chr3 39195651 39195691 -120404092 + (TTTTTG)n Simple_repeat Simple_repeat 2 39 0 2 884 519 17 0 0 chr3 39196188 39196248 -120403535 + (TG)n Simple_repeat Simple_repeat 1 60 0 2 884 954 328 38 18 chr3 39196478 39196872 -120402911 - RMER5 LTR ERV1 -7 527 126 2 884 15513 59 3 1 chr3 39197667 39200472 -120399311 - L1Md_F2 LINE L1 0 6582 3772 2 884 281 262 78 135 chr3 39201134 39201275 -120398508 + MTEa LTR MaLR 52 184 -195 2 884 991 118 17 23 chr3 39201725 39201899 -120397884 + Lx LINE L1 6478 6650 -4 2 884 310 284 8 54 chr3 39202019 39202149 -120397634 - URR1A DNA MER1_type -43 183 60 2 884 1783 346 37 28 chr3 39202231 39203498 -120396285 + ERVL-B4-int LTR ERVL 124 1402 -4312 2 884 453 279 145 22 chr3 39203592 39203615 -120396168 - ERVL-int LTR ERVL -2040 3717 3694 2 884 297 0 0 0 chr3 39203615 39203648 -120396135 + (CA)n Simple_repeat Simple_repeat 2 34 0 2 884 453 296 153 16 chr3 39203648 39203928 -120395855 - ERVL-int LTR ERVL -2064 3693 3259 2 884 353 181 93 2 chr3 39204062 39204171 -120395612 + ERVL-B4-int LTR ERVL 5594 5740 -17 2 884 226 285 80 58 chr3 39204256 39204394 -120395389 + MLT2B3 LTR ERVL 73 213 -341 2 884 375 346 20 50 chr3 39205588 39205786 -120393997 + ORR1E LTR MaLR 1 192 -167 2 884 447 19 0 0 chr3 39206088 39206140 -120393643 + (TA)n Simple_repeat Simple_repeat 2 53 0 2 884 519 337 62 26 chr3 39206163 39206586 -120393197 - Charlie6 DNA MER1_type -378 3122 2685 2 884 243 0 0 0 chr3 39206850 39206877 -120392906 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2 884 435 372 58 40 chr3 39206912 39207259 -120392524 - Charlie6 DNA MER1_type -1001 2499 2147 2 884 398 301 195 5 chr3 39207271 39207637 -120392146 + Lx7 LINE L1 5471 5895 -1801 2 884 349 281 49 28 chr3 39208082 39208225 -120391558 + Lx8 LINE L1 6189 6334 -1139 2 884 21 0 0 0 chr3 39208885 39208906 -120390877 + AT_rich Low_complexity Low_complexity 1 21 0 2 884 27 0 0 0 chr3 39208976 39209003 -120390780 + AT_rich Low_complexity Low_complexity 1 27 0 2 884 318 280 111 9 chr3 39209836 39209944 -120389839 + PB1D7 SINE Alu 2 120 0 2 884 2198 158 29 3 chr3 39210033 39210415 -120389368 - ORR1B1 LTR MaLR -2 392 1 2 884 1141 174 27 89 chr3 39210561 39210820 -120388963 - ORR1B1 LTR MaLR -8 386 144 2 884 726 12 0 0 chr3 39211352 39211435 -120388348 + (GA)n Simple_repeat Simple_repeat 2 84 0 2 884 218 217 0 0 chr3 39213016 39213062 -120386721 + (TA)n Simple_repeat Simple_repeat 2 47 0 2 884 244 310 65 65 chr3 39213276 39213431 -120386352 + L2 LINE L2 2471 2625 -794 2 884 477 271 14 0 chr3 39213460 39213604 -120386179 - RCHARR1 DNA MER1_type -99 875 730 2 884 793 218 34 28 chr3 39213609 39213788 -120385995 + B3A SINE B2 3 182 -16 2 884 1717 275 77 4 chr3 39213851 39214383 -120385400 - RCHARR1 DNA MER1_type -403 571 1 2 884 349 285 21 91 chr3 39214427 39214570 -120385213 - B1F2 SINE Alu 0 149 17 2 884 403 273 273 0 chr3 39215416 39215559 -120384224 - B3A SINE B2 -16 182 1 2 884 26 74 0 0 chr3 39215641 39215695 -120384088 + AT_rich Low_complexity Low_complexity 1 54 0 2 884 24 32 0 0 chr3 39216383 39216414 -120383369 + AT_rich Low_complexity Low_complexity 1 31 0 2 884 252 77 0 0 chr3 39216495 39216534 -120383249 + (TC)n Simple_repeat Simple_repeat 1 39 0 2 884 200 291 0 0 chr3 39216534 39216589 -120383194 + (CATA)n Simple_repeat Simple_repeat 2 56 0 2 884 642 95 0 0 chr3 39216682 39216777 -120383006 + (TTTC)n Simple_repeat Simple_repeat 2 96 0 2 884 1033 96 0 0 chr3 39216779 39216914 -120382869 - B1_Mus2 SINE Alu 0 147 13 2 884 21 0 0 0 chr3 39219291 39219312 -120380471 + AT_rich Low_complexity Low_complexity 1 21 0 2 884 424 299 162 34 chr3 39219388 39219579 -120380204 + B3A SINE B2 6 209 -7 2 884 504 45 0 0 chr3 39220518 39220585 -120379198 + (TG)n Simple_repeat Simple_repeat 2 68 0 2 884 560 310 90 123 chr3 39222090 39222480 -120377303 - MTE2a LTR MaLR 0 379 3 2 884 560 264 47 36 chr3 39222845 39223038 -120376745 - B3A SINE B2 -3 195 1 2 884 227 378 55 40 chr3 39224030 39224231 -120375552 + MLT1C LTR MaLR 259 462 -5 2 884 582 15 0 0 chr3 39224579 39224646 -120375137 + (TCC)n Simple_repeat Simple_repeat 1 67 0 3 884 230 308 50 17 chr3 39224855 39224974 -120374809 - L1_Rod LINE L1 -29 5818 5696 3 884 239 54 0 26 chr3 39225018 39225056 -120374727 + (TTTA)n Simple_repeat Simple_repeat 3 39 0 3 884 1147 99 6 0 chr3 39225056 39225218 -120374565 - B2_Mm1t SINE B2 -30 163 1 3 884 475 264 126 33 chr3 39225220 39225459 -120374324 - L1_Mur3 LINE L1 -147 5733 5481 3 884 997 99 6 18 chr3 39227344 39227509 -120372274 + L1_Mus2 LINE L1 6402 6564 -2 3 884 320 263 31 31 chr3 39227561 39227659 -120372124 - B1_Mus2 SINE Alu -41 106 9 3 884 576 0 0 0 chr3 39227879 39227943 -120371840 + (TTTC)n Simple_repeat Simple_repeat 2 65 0 3 884 370 277 73 6 chr3 39229171 39229349 -120370434 - L1MDb LINE L1 -5059 1350 1161 3 884 312 339 34 52 chr3 39230309 39230542 -120369241 + L1MD LINE L1 5308 5536 -823 3 884 227 309 23 16 chr3 39230561 39230689 -120369094 + L1M2 LINE L1 5632 5760 -531 3 884 283 271 58 47 chr3 39230870 39231060 -120368723 - L1MA4 LINE L1 -8 6292 6101 3 884 1313 231 26 0 chr3 39231341 39231609 -120368174 + Lx6 LINE L1 7159 7433 -27 3 884 2113 250 62 70 chr3 39231618 39232417 -120367366 - RMER1B Other Other 0 1066 89 3 884 363 96 0 0 chr3 39232433 39232485 -120367298 + (A)n Simple_repeat Simple_repeat 1 52 0 3 884 21 57 0 0 chr3 39232492 39232527 -120367256 + AT_rich Low_complexity Low_complexity 1 35 0 3 884 568 306 52 34 chr3 39235415 39235614 -120364169 + B3A SINE B2 1 195 -21 3 884 22 35 0 0 chr3 39235614 39235643 -120364140 + AT_rich Low_complexity Low_complexity 1 29 0 3 884 23 68 0 0 chr3 39236269 39236313 -120363470 + AT_rich Low_complexity Low_complexity 1 44 0 3 884 23 22 0 61 chr3 39236902 39236951 -120362832 + AT_rich Low_complexity Low_complexity 1 46 0 3 884 286 299 17 93 chr3 39237043 39237161 -120362622 + MT2B LTR ERVL 163 271 -330 3 884 649 202 69 8 chr3 39237055 39237185 -120362598 + B1_Mur2 SINE Alu 11 148 -1 3 884 399 68 0 0 chr3 39237225 39237284 -120362499 + (TATG)n Simple_repeat Simple_repeat 2 60 0 3 884 996 117 0 0 chr3 39237284 39237421 -120362362 - B1_Mus1 SINE Alu -9 139 3 3 884 232 24 0 106 chr3 39237425 39237472 -120362311 + (TTTTTG)n Simple_repeat Simple_repeat 1 42 0 3 884 262 165 25 0 chr3 39238701 39238780 -120361003 + (TG)n Simple_repeat Simple_repeat 2 82 0 3 884 21 0 0 0 chr3 39239001 39239022 -120360761 + AT_rich Low_complexity Low_complexity 1 21 0 3 884 257 303 71 13 chr3 39240456 39240610 -120359173 + L1MA6 LINE L1 6137 6299 -1 3 884 241 385 108 15 chr3 39242452 39242721 -120357062 + MLT1D LTR MaLR 89 382 -123 3 884 183 80 0 0 chr3 39244101 39244126 -120355657 + (TTTA)n Simple_repeat Simple_repeat 4 28 0 3 884 405 39 0 0 chr3 39244333 39244384 -120355399 + (TA)n Simple_repeat Simple_repeat 2 52 0 3 884 207 139 0 0 chr3 39246321 39246357 -120353426 + (CAT)n Simple_repeat Simple_repeat 2 37 0 3 884 180 0 0 0 chr3 39246387 39246407 -120353376 + (TAAAA)n Simple_repeat Simple_repeat 2 21 0 3 884 3993 75 0 15 chr3 39248616 39249158 -120350625 - L1Md_F2 LINE L1 -12 6570 6037 3 884 868 102 0 14 chr3 39249571 39249711 -120350072 + (TTCCC)n Simple_repeat Simple_repeat 1 138 0 3 884 267 317 9 50 chr3 39249715 39249918 -120349865 + CT-rich Low_complexity Low_complexity 1 194 0 3 884 228 67 0 0 chr3 39249995 39250025 -120349758 + (TTA)n Simple_repeat Simple_repeat 2 31 0 3 884 281 198 0 129 chr3 39251738 39251831 -120347952 - RLTR25A LTR ERVK -501 602 522 3 884 421 232 0 97 chr3 39251750 39251874 -120347909 - MT2B LTR ERVL -323 278 167 3 884 795 90 0 0 chr3 39251765 39251876 -120347907 - B1_Mm SINE Alu -36 111 1 3 884 405 0 0 0 chr3 39252043 39252088 -120347695 + (TG)n Simple_repeat Simple_repeat 2 46 0 3 884 429 300 36 9 chr3 39252091 39252202 -120347581 - RSINE1 SINE B4 -39 126 13 3 884 372 94 0 0 chr3 39253433 39253486 -120346297 + (GA)n Simple_repeat Simple_repeat 2 54 0 3 884 599 290 47 0 chr3 39254537 39254706 -120345077 + ID_B1 SINE B4 3 179 -45 3 884 377 256 89 43 chr3 39255378 39255635 -120344148 + L1MC3 LINE L1 6830 7098 -687 3 884 473 312 96 52 chr3 39255652 39256017 -120343766 - MLT2C1 LTR ERVL -13 384 4 3 884 440 326 52 20 chr3 39256017 39256267 -120343516 + L1MC3 LINE L1 7134 7391 -394 3 884 270 0 0 0 chr3 39256285 39256315 -120343468 + (T)n Simple_repeat Simple_repeat 1 30 0 3 884 244 284 69 0 chr3 39256325 39256427 -120343356 + L1MC LINE L1 5689 5797 -2085 3 884 540 223 9 28 chr3 39256440 39256546 -120343237 + B1F SINE Alu 41 144 -5 3 884 241 270 181 29 chr3 39258213 39258423 -120341360 + L1MC3 LINE L1 7511 7752 -33 3 884 378 0 0 0 chr3 39259210 39259252 -120340531 + (TG)n Simple_repeat Simple_repeat 2 43 0 3 884 22 70 0 0 chr3 39259667 39259710 -120340073 + AT_rich Low_complexity Low_complexity 1 43 0 3 884 3409 269 95 25 chr3 39260113 39260197 -120339586 - Lx9 LINE L1 -20 7624 7520 3 884 665 79 10 0 chr3 39260197 39260298 -120339485 + (CA)n Simple_repeat Simple_repeat 2 103 0 3 884 3409 272 93 25 chr3 39260298 39261435 -120338348 - Lx9 LINE L1 -125 7519 6182 3 884 516 32 0 0 chr3 39261435 39261497 -120338286 + (TA)n Simple_repeat Simple_repeat 2 63 0 3 884 297 0 0 0 chr3 39261498 39261531 -120338252 + (GA)n Simple_repeat Simple_repeat 1 33 0 3 884 6103 263 71 48 chr3 39261531 39264291 -120335492 - Lx9 LINE L1 -1292 6181 3332 3 884 524 260 62 28 chr3 39264334 39264512 -120335271 + L1_Rod LINE L1 3946 4129 -1718 3 884 696 227 39 80 chr3 39264512 39264887 -120334896 - Lx9 LINE L1 -2810 3333 2994 3 884 552 266 145 36 chr3 39264934 39265238 -120334545 - Lx8 LINE L1 -9 7464 7128 3 884 356 368 18 0 chr3 39265684 39265798 -120333985 + MER5A1 DNA MER1_type 2 117 -49 3 884 7747 232 27 18 chr3 39265826 39267575 -120332208 - Lx6 LINE L1 0 7460 5697 3 884 203 114 0 22 chr3 39268356 39268401 -120331382 + (CAAAA)n Simple_repeat Simple_repeat 1 44 0 3 884 219 36 0 0 chr3 39268493 39268521 -120331262 + (CAA)n Simple_repeat Simple_repeat 2 29 0 3 884 832 229 43 14 chr3 39269117 39269325 -120330458 + B3 SINE B2 1 214 -2 3 884 355 343 27 20 chr3 39270526 39270672 -120329111 - ID_B1 SINE B4 -77 147 1 3 884 21 0 0 0 chr3 39271163 39271184 -120328599 + AT_rich Low_complexity Low_complexity 1 21 0 3 884 256 301 79 67 chr3 39272381 39272545 -120327238 + MLT1A1 LTR MaLR 155 320 -88 3 884 219 88 0 0 chr3 39273243 39273277 -120326506 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 3 884 1241 110 9 31 chr3 39273277 39273503 -120326280 - Lx LINE L1 -15 6639 6419 3 884 396 0 0 0 chr3 39274971 39275015 -120324768 + (TAAA)n Simple_repeat Simple_repeat 2 45 0 3 884 186 189 0 0 chr3 39275691 39275728 -120324055 + (TATATG)n Simple_repeat Simple_repeat 2 38 0 3 884 21 0 0 0 chr3 39275956 39275977 -120323806 + AT_rich Low_complexity Low_complexity 1 21 0 3 884 257 0 30 0 chr3 39276498 39276531 -120323252 + (CA)n Simple_repeat Simple_repeat 2 35 0 3 884 1331 255 30 40 chr3 39277744 39278148 -120321635 - MTD LTR MaLR 0 419 20 3 884 2963 252 93 63 chr3 39278159 39279142 -120320641 - MTD-int LTR MaLR -3 1255 244 3 884 443 297 89 26 chr3 39279300 39279490 -120320293 - MLT1J-int LTR MaLR -244 1143 942 3 884 521 265 27 7 chr3 39280018 39280166 -120319617 + RSINE1 SINE B4 3 153 -12 3 884 2696 214 31 11 chr3 39280489 39281043 -120318740 + RMER15 LTR ERVL 6 570 -5 3 884 250 238 3 13 chr3 39283580 39283673 -120316110 - L1M2 LINE L1 -1094 5049 4905 3 884 414 0 0 0 chr3 39283677 39283723 -120316060 + (TG)n Simple_repeat Simple_repeat 2 47 0 3 884 201 133 0 0 chr3 39283761 39283791 -120315992 + (CAT)n Simple_repeat Simple_repeat 2 31 0 3 884 432 344 103 66 chr3 39283887 39284189 -120315594 + RMER20B LTR ERVK 90 402 -225 3 884 761 290 24 10 chr3 39284331 39284540 -120315243 - B4A SINE B4 -80 212 1 3 884 300 27 0 0 chr3 39285021 39285058 -120314725 + (TG)n Simple_repeat Simple_repeat 2 38 0 3 884 708 251 55 69 chr3 39285723 39285941 -120313842 + B3 SINE B2 1 215 -1 3 884 648 168 0 0 chr3 39286116 39286241 -120313542 + (TG)n Simple_repeat Simple_repeat 1 125 0 3 884 2004 180 33 23 chr3 39286256 39286653 -120313130 + MTC LTR MaLR 1 401 -20 3 884 279 0 0 0 chr3 39288036 39288067 -120311716 + (TC)n Simple_repeat Simple_repeat 2 32 0 3 884 351 0 0 0 chr3 39288067 39288105 -120311678 + (TG)n Simple_repeat Simple_repeat 2 40 0 3 884 388 329 6 0 chr3 39288155 39288372 -120311411 + (TG)n Simple_repeat Simple_repeat 1 218 0 3 884 425 301 117 66 chr3 39288489 39288763 -120311020 - B4A SINE B4 -3 289 2 3 884 21 71 0 0 chr3 39290251 39290293 -120309490 + AT_rich Low_complexity Low_complexity 1 42 0 3 884 510 61 0 0 chr3 39290386 39290452 -120309331 + (TCTA)n Simple_repeat Simple_repeat 3 68 0 3 884 393 305 67 17 chr3 39292673 39292853 -120306930 - RMER12 LTR ERVK -355 967 779 3 884 430 302 16 143 chr3 39293161 39293524 -120306259 - Lx8 LINE L1 -4 7469 7153 3 884 628 281 7 20 chr3 39293723 39293872 -120305911 + B3 SINE B2 2 148 -68 3 884 344 294 72 14 chr3 39294667 39294805 -120304978 + RSINE1 SINE B4 1 146 -19 3 884 548 29 0 14 chr3 39294849 39294920 -120304863 + (GA)n Simple_repeat Simple_repeat 1 70 0 3 884 241 336 0 40 chr3 39295720 39295844 -120303939 + (CATA)n Simple_repeat Simple_repeat 4 122 0 3 884 695 116 9 0 chr3 39295857 39295969 -120303814 + (TC)n Simple_repeat Simple_repeat 1 113 0 3 884 432 143 0 0 chr3 39295968 39296052 -120303731 + (CA)n Simple_repeat Simple_repeat 1 84 0 3 884 423 0 0 0 chr3 39296360 39296407 -120303376 + (CA)n Simple_repeat Simple_repeat 1 47 0 3 884 36869 45 12 3 chr3 39297092 39303188 -120296595 - L1Md_T LINE L1 -3 6579 466 3 884 244 143 0 0 chr3 39303189 39303231 -120296552 - L1Md_T LINE L1 -6291 325 284 3 884 216 0 0 0 chr3 39303452 39303476 -120296307 + (T)n Simple_repeat Simple_repeat 1 24 0 3 884 1167 75 0 0 chr3 39303476 39303622 -120296161 - B1_Mm SINE Alu 0 147 2 4 884 2311 169 32 4 chr3 39305339 39305813 -120293970 - L1_Mur3 LINE L1 -1362 4515 4029 4 884 5110 181 66 19 chr3 39305817 39306274 -120293509 - L1_Mur3 LINE L1 -3356 2521 2057 4 884 324 0 0 0 chr3 39306274 39306310 -120293473 + (TC)n Simple_repeat Simple_repeat 2 37 0 4 884 189 74 0 0 chr3 39306310 39306336 -120293447 + (TG)n Simple_repeat Simple_repeat 2 28 0 4 884 5110 199 55 16 chr3 39306336 39307387 -120292396 - L1_Mur3 LINE L1 -3821 2056 883 4 884 315 0 0 0 chr3 39308048 39308083 -120291700 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 4 884 21 0 0 0 chr3 39308412 39308433 -120291350 + AT_rich Low_complexity Low_complexity 1 21 0 4 884 323 238 60 0 chr3 39308434 39308518 -120291265 + L1MD LINE L1 5727 5815 -544 4 884 459 0 0 0 chr3 39309868 39309919 -120289864 + (TC)n Simple_repeat Simple_repeat 2 52 0 4 884 1095 58 14 0 chr3 39309919 39310057 -120289726 - B1_Mus1 SINE Alu -8 140 1 4 884 401 293 117 75 chr3 39310218 39310602 -120289181 - L1_Rod LINE L1 -68 5779 5380 4 884 676 103 8 8 chr3 39310726 39310843 -120288940 + (TGGA)n Simple_repeat Simple_repeat 4 120 0 4 884 23 33 0 0 chr3 39311235 39311265 -120288518 + AT_rich Low_complexity Low_complexity 1 30 0 4 884 261 0 0 0 chr3 39311366 39311395 -120288388 + (T)n Simple_repeat Simple_repeat 1 29 0 4 884 252 317 56 48 chr3 39312062 39312188 -120287595 + LTR40b LTR ERVL 133 259 -203 4 884 1096 298 41 14 chr3 39312419 39312763 -120287020 - MTEa LTR MaLR -8 371 19 4 884 6153 118 42 8 chr3 39313056 39314044 -120285739 + Lx LINE L1 5623 6644 -10 4 884 207 0 0 0 chr3 39314431 39314454 -120285329 + (A)n Simple_repeat Simple_repeat 1 23 0 4 884 244 271 16 130 chr3 39315411 39315534 -120284249 + B1_Mur3 SINE Alu 1 109 -40 4 884 1182 254 103 6 chr3 39315556 39315877 -120283906 + MT2A LTR ERVL 20 371 -162 4 884 11538 55 3 0 chr3 39315878 39317421 -120282362 + L1Md_T LINE L1 3008 4554 -1329 4 884 1198 46 0 0 chr3 39317418 39317569 -120282214 + L1Md_T LINE L1 5435 5585 -298 4 884 8426 32 1 0 chr3 39317570 39318563 -120281220 + L1Md_T LINE L1 5587 6580 -2 4 884 2295 55 0 0 chr3 39318563 39318856 -120280927 + L1Md_F3 LINE L1 5294 5586 -297 4 884 7996 41 7 3 chr3 39318857 39319850 -120279933 + L1Md_F3 LINE L1 5588 6584 0 4 884 356 263 188 0 chr3 39319858 39319991 -120279792 + MT2A LTR ERVL 376 533 0 4 884 268 336 31 15 chr3 39320424 39320554 -120279229 + MLT1A1 LTR MaLR 277 408 0 4 884 192 111 0 0 chr3 39321001 39321037 -120278746 + (GTTTG)n Simple_repeat Simple_repeat 4 39 0 4 884 2823 40 108 0 chr3 39321060 39321431 -120278352 - IAPLTR2a LTR ERVK 0 411 1 4 884 947 62 124 0 chr3 39321457 39321586 -120278197 - B1_Mm SINE Alu -1 146 2 4 885 22 0 0 0 chr3 39322014 39322036 -120277747 + AT_rich Low_complexity Low_complexity 1 22 0 4 885 353 301 211 32 chr3 39322827 39323155 -120276628 - MLT1A1 LTR MaLR 0 365 24 4 885 550 299 31 19 chr3 39323735 39323895 -120275888 + B3A SINE B2 2 163 -35 4 885 324 0 0 0 chr3 39323908 39323944 -120275839 + (CA)n Simple_repeat Simple_repeat 1 36 0 4 885 363 125 0 0 chr3 39323945 39324017 -120275766 + (GA)n Simple_repeat Simple_repeat 2 73 0 4 885 540 0 0 0 chr3 39324542 39324602 -120275181 + (TC)n Simple_repeat Simple_repeat 1 60 0 4 885 258 148 44 22 chr3 39325015 39325105 -120274678 + (CAGAGA)n Simple_repeat Simple_repeat 2 93 0 4 885 352 299 74 34 chr3 39325847 39325996 -120273787 + RSINE1 SINE B4 11 165 0 4 885 400 196 38 7 chr3 39325998 39326296 -120273487 + (CA)n Simple_repeat Simple_repeat 1 307 0 4 885 295 195 42 0 chr3 39326322 39326440 -120273343 + (CA)n Simple_repeat Simple_repeat 2 124 0 4 885 6248 200 86 21 chr3 39327556 39329524 -120270259 + Lx5 LINE L1 4895 7003 -47 4 885 238 87 43 0 chr3 39329573 39329619 -120270164 + (TA)n Simple_repeat Simple_repeat 1 48 0 4 885 301 75 13 141 chr3 39329628 39329706 -120270077 + MT2B2 LTR ERVL 517 584 0 4 885 258 220 0 0 chr3 39329708 39329767 -120270016 + (TCCA)n Simple_repeat Simple_repeat 3 61 0 4 885 248 237 68 8 chr3 39329863 39329995 -120269788 + (TCTA)n Simple_repeat Simple_repeat 3 142 0 4 885 1153 58 0 0 chr3 39330144 39330283 -120269500 - B1_Mm SINE Alu -8 139 1 4 885 432 192 0 0 chr3 39331347 39331446 -120268337 + (TG)n Simple_repeat Simple_repeat 1 99 0 4 885 32 0 0 0 chr3 39331473 39331505 -120268278 + AT_rich Low_complexity Low_complexity 1 32 0 4 885 2886 69 10 0 chr3 39332010 39332403 -120267380 - L1_Mm LINE L1 -936 4947 4551 4 885 3682 71 2 4 chr3 39332403 39332885 -120266898 + L1Md_F2 LINE L1 6102 6582 0 4 885 285 109 0 0 chr3 39333181 39333227 -120266556 + (GGGAGA)n Simple_repeat Simple_repeat 4 49 0 4 885 824 246 21 16 chr3 39333317 39333711 -120266072 + L1_Rod LINE L1 1027 1422 -4425 4 885 695 120 8 0 chr3 39333711 39333828 -120265955 + (GA)n Simple_repeat Simple_repeat 2 119 0 4 885 351 0 0 0 chr3 39333828 39333890 -120265893 + (GGAA)n Simple_repeat Simple_repeat 1 62 0 4 885 461 285 16 31 chr3 39334259 39334386 -120265397 - RMER20B LTR ERVK -502 125 1 4 885 2732 238 82 20 chr3 39334386 39335391 -120264392 + L1_Rod LINE L1 1453 2519 -3328 4 885 1498 164 216 3 chr3 39335428 39335747 -120264036 + ORR1B1 LTR MaLR 6 392 -2 4 885 1325 218 77 14 chr3 39335752 39336194 -120263589 + L1_Rod LINE L1 2537 3006 -2841 4 885 1366 240 83 12 chr3 39336195 39336617 -120263166 + Lx9 LINE L1 7038 7489 -155 4 885 263 375 0 0 chr3 39336789 39336885 -120262898 - PB1D10 SINE Alu -21 96 1 4 885 441 125 22 11 chr3 39336934 39337023 -120262760 + CT-rich Low_complexity Low_complexity 3 92 0 4 885 369 0 0 0 chr3 39337143 39337184 -120262599 + (TTTTA)n Simple_repeat Simple_repeat 4 44 0 4 885 1127 84 0 0 chr3 39337187 39337329 -120262454 - B1_Mus1 SINE Alu -6 142 1 4 885 2511 196 125 15 chr3 39337642 39338244 -120261539 - MERVL_2A-int LTR ERVL -2830 2931 2264 4 885 1500 301 17 15 chr3 39338286 39338828 -120260955 + Lx8 LINE L1 6708 7250 -223 4 885 304 319 99 54 chr3 39339256 39339498 -120260285 + L1M4c LINE L1 1095 1347 -5037 4 885 5686 33 0 0 chr3 39339642 39340306 -120259477 - L1Md_F3 LINE L1 -16 6568 5905 4 885 265 230 141 16 chr3 39340311 39340439 -120259344 + L1M4c LINE L1 1686 1842 -4560 4 885 271 283 75 14 chr3 39340584 39340730 -120259053 + L1MA4A LINE L1 5358 5525 -778 4 885 443 335 19 5 chr3 39340910 39341126 -120258657 + L1MA4A LINE L1 5685 5903 -400 4 885 311 270 61 35 chr3 39341564 39341679 -120258104 + B3A SINE B2 16 133 -65 4 885 794 11 11 0 chr3 39343283 39343378 -120256405 + (GAAA)n Simple_repeat Simple_repeat 3 98 0 4 885 528 45 0 0 chr3 39343530 39343597 -120256186 + (TCTA)n Simple_repeat Simple_repeat 4 70 0 4 885 2299 67 26 6 chr3 39344938 39345255 -120254528 - IAPLTR2b LTR ERVK -17 310 1 4 885 7419 231 19 25 chr3 39345255 39347162 -120252621 - IAPLTR3-int LTR ERVK -20 6801 4906 4 885 1790 75 4 0 chr3 39347159 39347398 -120252385 - IAPEY3-int LTR ERVK -5183 2497 2258 4 885 413 53 0 0 chr3 39347403 39347460 -120252323 - B1_Mus1 SINE Alu -91 57 1 4 885 3938 108 65 19 chr3 39347460 39348295 -120251488 - IAPLTR4_I LTR ERVK -288 1182 1 4 885 2222 83 25 9 chr3 39348302 39348617 -120251166 - IAPLTR4_I LTR ERVK -7 320 1 4 885 612 308 41 0 chr3 39349327 39349499 -120250284 + B3A SINE B2 1 179 -19 4 885 387 0 0 0 chr3 39349499 39349542 -120250241 + (CA)n Simple_repeat Simple_repeat 1 43 0 4 885 716 228 0 0 chr3 39349544 39349689 -120250094 - B1_Mur3 SINE Alu 0 149 5 4 885 257 0 30 0 chr3 39350817 39350850 -120248933 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 4 885 1037 335 50 46 chr3 39350924 39351200 -120248583 + Lx9 LINE L1 6679 6947 -697 4 885 578 14 27 0 chr3 39351200 39351274 -120248509 + (TAGA)n Simple_repeat Simple_repeat 2 77 0 4 885 1037 335 50 46 chr3 39351274 39351754 -120248029 + Lx9 LINE L1 6948 7438 -206 4 885 1564 150 38 0 chr3 39352840 39353133 -120246650 + L1_Mur2 LINE L1 4906 5209 -668 4 885 976 201 228 4 chr3 39353147 39353397 -120246386 + Lx4B LINE L1 6753 7058 0 4 885 22 35 0 0 chr3 39353888 39353917 -120245866 + AT_rich Low_complexity Low_complexity 1 29 0 4 885 443 317 28 42 chr3 39354407 39354621 -120245162 - RMER15 LTR ERVL -65 510 300 4 885 246 221 59 96 chr3 39355347 39355477 -120244306 - LTR37B LTR ERV1 -5 463 296 4 885 641 263 77 0 chr3 39355477 39355671 -120244112 + B3 SINE B2 1 209 -7 4 885 665 56 11 0 chr3 39355887 39355977 -120243806 + (GAAA)n Simple_repeat Simple_repeat 4 94 0 4 885 1175 102 0 6 chr3 39355995 39356173 -120243610 + (GAAA)n Simple_repeat Simple_repeat 1 177 0 4 885 204 40 0 0 chr3 39356173 39356197 -120243586 + (GGGA)n Simple_repeat Simple_repeat 2 26 0 4 885 256 312 0 0 chr3 39356271 39356335 -120243448 + ID4_ SINE ID 13 76 -7 4 885 274 196 18 0 chr3 39356395 39356451 -120243332 - LTR37B LTR ERV1 -213 255 199 4 885 3020 115 10 27 chr3 39356898 39357380 -120242403 + RLTR31B_Mm LTR ERVK 3 476 -81 4 885 910 251 25 5 chr3 39358045 39358249 -120241534 - B3 SINE B2 -6 210 3 4 885 565 127 18 49 chr3 39358326 39358550 -120241233 + (TAGA)n Simple_repeat Simple_repeat 1 217 0 4 885 195 211 0 63 chr3 39360751 39360862 -120238921 + CT-rich Low_complexity Low_complexity 1 104 0 4 885 1075 297 62 3 chr3 39360891 39361198 -120238585 - ORR1D2 LTR MaLR -30 340 16 4 885 225 316 143 50 chr3 39361215 39361355 -120238428 + MLT1A LTR MaLR 186 338 -36 4 885 661 295 66 22 chr3 39361545 39361864 -120237919 - L1MEf LINE L1 -4551 1649 1317 4 885 1175 274 61 33 chr3 39363326 39363685 -120236098 - MTE2a LTR MaLR -8 371 3 4 885 24 0 0 0 chr3 39363728 39363752 -120236031 + AT_rich Low_complexity Low_complexity 1 24 0 4 885 338 340 53 7 chr3 39366239 39366426 -120233357 + MIRc SINE MIR 45 237 -31 4 885 784 312 108 19 chr3 39367251 39367623 -120232160 - MTD LTR MaLR -14 405 1 4 885 189 0 0 0 chr3 39367789 39367810 -120231973 + (TG)n Simple_repeat Simple_repeat 2 22 0 4 885 951 71 253 0 chr3 39368014 39368168 -120231615 - B2_Mm2 SINE B2 -1 194 2 4 885 2102 135 3 3 chr3 39368588 39368899 -120230884 - RLTR10E LTR ERVK 0 311 1 4 885 26491 91 5 3 chr3 39368899 39372997 -120226786 - MMERVK10C-int LTR ERVK 0 7680 3552 4 885 1586 68 307 4 chr3 39372993 39373251 -120226532 - MMERVK10C-int LTR ERVK -4515 3066 2730 4 885 4109 82 0 7 chr3 39373249 39373814 -120225969 - MMERVK10C-int LTR ERVK -5136 2445 1885 4 885 376 185 123 0 chr3 39373805 39373886 -120225897 - MMERVK10C-int LTR ERVK -5109 1028 938 4 885 2118 164 74 40 chr3 39373891 39374722 -120225061 - MMERVK10C-int LTR ERVK -6709 872 313 4 885 1290 119 5 0 chr3 39374819 39375020 -120224763 - MMERVK10C-int LTR ERVK -7155 426 225 4 885 256 259 0 18 chr3 39375020 39375075 -120224708 - RLTR27 LTR ERVK -34 275 222 4 885 660 97 0 0 chr3 39375075 39375168 -120224615 - MMERVK10C-int LTR ERVK -7488 93 1 4 885 2001 142 3 6 chr3 39375168 39375480 -120224303 - RLTR10E LTR ERVK 0 311 1 4 885 689 102 9 0 chr3 39375735 39375843 -120223940 + (TA)n Simple_repeat Simple_repeat 2 110 0 4 885 247 291 56 14 chr3 39376214 39376357 -120223426 - L1MC LINE L1 -2562 3584 3436 4 885 464 346 41 41 chr3 39376426 39376718 -120223065 - L1MC LINE L1 -2737 3409 3118 4 885 231 336 9 35 chr3 39376794 39376908 -120222875 + MTEa LTR MaLR 192 302 -77 4 885 515 142 0 29 chr3 39376908 39377010 -120222773 + GA-rich Low_complexity Low_complexity 2 100 0 5 885 1244 45 23 0 chr3 39377012 39377188 -120222595 + (GA)n Simple_repeat Simple_repeat 1 180 0 5 885 258 238 16 0 chr3 39377190 39377253 -120222530 - RMER15 LTR ERVL -154 421 358 5 885 366 310 69 30 chr3 39377277 39377510 -120222273 - L1_Mur3 LINE L1 -527 5353 5112 5 885 1639 310 64 13 chr3 39377511 39378266 -120221517 + Lx8 LINE L1 6681 7473 0 5 885 312 351 13 7 chr3 39378421 39378570 -120221213 - RMER1C Other Other -824 518 369 5 885 1364 65 0 36 chr3 39378921 39379114 -120220669 + B2_Mm2 SINE B2 1 186 -9 5 885 1585 194 102 0 chr3 39380208 39380341 -120219442 - RLTR25A LTR ERVK 0 1103 970 5 885 970 8 17 0 chr3 39380341 39380460 -120219323 + (TC)n Simple_repeat Simple_repeat 2 122 0 5 885 1585 194 102 0 chr3 39380460 39380547 -120219236 - RLTR25A LTR ERVK -134 969 850 5 885 324 0 0 0 chr3 39380547 39380583 -120219200 + (TAAA)n Simple_repeat Simple_repeat 4 39 0 5 885 1585 194 102 0 chr3 39380583 39380732 -120219051 - RLTR25A LTR ERVK -254 849 697 5 885 20451 114 145 7 chr3 39382037 39387610 -120212173 + L1_Mus1 LINE L1 177 6567 0 5 885 210 143 0 0 chr3 39388007 39388042 -120211741 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 5 885 273 89 0 0 chr3 39389298 39389343 -120210440 + (TC)n Simple_repeat Simple_repeat 2 46 0 5 885 225 0 0 0 chr3 39389344 39389369 -120210414 + (CA)n Simple_repeat Simple_repeat 2 26 0 5 885 369 145 0 0 chr3 39389371 39389433 -120210350 + (TTA)n Simple_repeat Simple_repeat 3 64 0 5 885 261 0 0 0 chr3 39389705 39389734 -120210049 + (TTTG)n Simple_repeat Simple_repeat 3 31 0 5 885 315 0 0 0 chr3 39390450 39390485 -120209298 + (A)n Simple_repeat Simple_repeat 1 35 0 5 885 370 293 155 14 chr3 39391651 39391793 -120207990 + RSINE1 SINE B4 4 165 0 5 885 236 289 30 92 chr3 39391795 39391959 -120207824 - RMER12 LTR ERVK -472 850 697 5 885 1233 182 127 12 chr3 39392365 39392610 -120207173 - Lx4A LINE L1 -8 7050 6778 5 885 13830 146 25 8 chr3 39392610 39395534 -120204249 - Lx4A LINE L1 -655 6403 3438 5 885 1002 104 0 0 chr3 39395795 39395939 -120203844 + B1_Mus1 SINE Alu 5 148 0 5 885 748 282 34 0 chr3 39397169 39397378 -120202405 + B3 SINE B2 1 216 0 5 885 459 216 0 0 chr3 39397609 39397720 -120202063 + (CA)n Simple_repeat Simple_repeat 2 112 0 5 885 207 344 11 53 chr3 39397795 39397890 -120201893 - MIRc SINE MIR -152 116 26 5 885 21 0 0 0 chr3 39398196 39398217 -120201566 + AT_rich Low_complexity Low_complexity 1 21 0 5 885 22 35 0 0 chr3 39398305 39398334 -120201449 + AT_rich Low_complexity Low_complexity 1 29 0 5 885 22 0 0 0 chr3 39398472 39398494 -120201289 + AT_rich Low_complexity Low_complexity 1 22 0 5 885 22 80 0 0 chr3 39398598 39398648 -120201135 + AT_rich Low_complexity Low_complexity 1 50 0 5 885 474 33 0 0 chr3 39398709 39398769 -120201014 + (CA)n Simple_repeat Simple_repeat 2 61 0 5 885 2059 177 51 0 chr3 39399878 39400251 -120199532 + ORR1B1 LTR MaLR 3 394 0 5 885 392 199 27 52 chr3 39401783 39402072 -120197711 + (CATA)n Simple_repeat Simple_repeat 1 281 0 5 885 191 228 67 50 chr3 39402555 39402615 -120197168 + L2c LINE L2 3271 3331 -56 5 885 264 274 115 48 chr3 39402701 39402866 -120196917 - L1M5 LINE L1 -1371 4775 4600 5 885 213 47 45 23 chr3 39403649 39403693 -120196090 + (CAAAA)n Simple_repeat Simple_repeat 2 46 0 5 885 419 296 9 18 chr3 39403890 39404000 -120195783 - B1F2 SINE Alu 0 149 41 5 885 1859 176 194 96 chr3 39404311 39404939 -120194844 - RMER6C LTR ERVK 0 690 1 5 885 226 285 187 30 chr3 39405316 39405450 -120194333 + MLT2B3 LTR ERVL 115 269 -285 5 885 4086 94 45 23 chr3 39405495 39406136 -120193647 - Lx3_Mus LINE L1 -681 6328 5674 5 885 21774 108 93 12 chr3 39406134 39410228 -120189555 - Lx3_Mus LINE L1 -1208 4678 6 5 885 3373 244 47 64 chr3 39410302 39411206 -120188577 - Lx6 LINE L1 -4 7456 6569 5 885 6046 232 54 65 chr3 39411200 39413434 -120186349 + Lx6 LINE L1 4430 6654 0 5 885 758 162 83 6 chr3 39413418 39413586 -120186197 + L1_Mur3 LINE L1 5237 5417 -463 5 885 533 230 26 0 chr3 39413567 39413680 -120186103 + Lx6 LINE L1 6453 6568 -892 5 885 25 51 0 0 chr3 39413685 39413724 -120186059 + AT_rich Low_complexity Low_complexity 1 39 0 5 885 332 200 12 0 chr3 39413746 39413826 -120185957 + CT-rich Low_complexity Low_complexity 3 83 0 5 885 198 71 0 0 chr3 39413820 39413848 -120185935 + (T)n Simple_repeat Simple_repeat 1 28 0 5 885 842 239 74 13 chr3 39413864 39414245 -120185538 + MT2A LTR ERVL 82 533 0 5 885 351 65 0 0 chr3 39414350 39414396 -120185387 + (TA)n Simple_repeat Simple_repeat 2 47 0 5 885 255 319 37 24 chr3 39414512 39414676 -120185107 - L1M5 LINE L1 -3305 2841 2676 5 885 219 242 0 61 chr3 39414810 39414876 -120184907 - ID4_ SINE ID -1 82 21 5 885 743 151 35 106 chr3 39415398 39415568 -120184215 - RMER19B LTR ERVK -6 896 739 5 885 805 64 102 16 chr3 39415593 39415720 -120184063 - RMER17A LTR ERVK 0 751 614 5 885 3022 57 34 0 chr3 39415721 39416104 -120183679 + MTA_Mm LTR MaLR 1 396 0 5 885 8739 55 3 1 chr3 39416104 39417200 -120182583 + MTA_Mm-int LTR MaLR 1 1098 0 5 885 2544 77 9 0 chr3 39417200 39417539 -120182244 + MTA_Mm LTR MaLR 1 342 -54 5 885 479 117 4 14 chr3 39417564 39417651 -120182132 - RMER19B LTR ERVK -132 770 711 5 885 379 225 14 0 chr3 39417645 39417716 -120182067 + RLTR20D LTR ERVK 497 568 0 5 885 21 0 0 0 chr3 39417936 39417957 -120181826 + AT_rich Low_complexity Low_complexity 1 21 0 5 885 270 0 0 0 chr3 39418962 39418992 -120180791 + (TG)n Simple_repeat Simple_repeat 2 31 0 5 885 255 228 35 0 chr3 39419540 39419597 -120180186 + ID4 SINE ID 12 70 -13 5 885 265 297 41 41 chr3 39420151 39420274 -120179509 + Kanga1a DNA Tc2 193 315 -439 5 885 180 0 0 0 chr3 39421216 39421236 -120178547 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 5 885 557 315 11 22 chr3 39421989 39422171 -120177612 - B3A SINE B2 -16 182 3 5 885 182 263 9 128 chr3 39425057 39425166 -120174617 + L2 LINE L2 2797 2892 -527 5 885 305 340 0 14 chr3 39425475 39425621 -120174162 + (TATG)n Simple_repeat Simple_repeat 1 144 0 5 885 237 237 0 0 chr3 39425623 39425682 -120174101 + (TATATG)n Simple_repeat Simple_repeat 6 64 0 5 885 378 248 4 31 chr3 39425734 39425997 -120173786 + (TATG)n Simple_repeat Simple_repeat 1 255 0 5 885 276 30 0 0 chr3 39426003 39426036 -120173747 + (TG)n Simple_repeat Simple_repeat 1 33 0 5 885 183 42 0 0 chr3 39428259 39428283 -120171500 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 5 885 6669 51 24 0 chr3 39428447 39429283 -120170500 + L1Md_F2 LINE L1 5715 6570 -12 5 885 194 105 26 0 chr3 39431181 39431219 -120168564 + (TCTG)n Simple_repeat Simple_repeat 4 42 0 5 885 542 323 95 56 chr3 39431651 39432336 -120167447 - L1MCa LINE L1 -5135 1616 813 5 885 414 0 0 0 chr3 39432496 39432542 -120167241 + (TG)n Simple_repeat Simple_repeat 1 46 0 5 885 503 280 63 34 chr3 39432757 39433036 -120166747 - ORR1E LTR MaLR -3 376 6 5 885 239 339 102 42 chr3 39433054 39433436 -120166347 - L1MCa LINE L1 -6097 654 250 5 885 1114 296 22 36 chr3 39434518 39434921 -120164862 - Lx9 LINE L1 -226 7418 6891 5 885 21 0 0 0 chr3 39434987 39435008 -120164775 + AT_rich Low_complexity Low_complexity 1 21 0 5 885 1764 92 3 71 chr3 39435279 39435573 -120164210 - L1Md_F2 LINE L1 -8 6574 6301 5 885 360 328 8 0 chr3 39435687 39435806 -120163977 + MER45B DNA Tip100 81 200 -840 5 885 444 357 68 41 chr3 39435865 39436160 -120163623 + MER45B DNA Tip100 305 607 -433 5 885 234 319 59 35 chr3 39436237 39436406 -120163377 + MER45B DNA Tip100 712 884 -156 5 885 3031 87 18 14 chr3 39437458 39437900 -120161883 + L1Md_F2 LINE L1 6139 6582 0 5 885 417 39 0 0 chr3 39438009 39438060 -120161723 + (TG)n Simple_repeat Simple_repeat 1 51 0 5 885 904 151 12 12 chr3 39438067 39438228 -120161555 + URR1B DNA MER1_type 65 225 0 5 885 323 98 20 61 chr3 39438487 39438585 -120161198 + T-rich Low_complexity Low_complexity 3 96 0 5 885 2431 268 95 38 chr3 39440599 39441356 -120158427 - RMER13A LTR ERVK -45 815 16 5 885 360 193 37 0 chr3 39442086 39442195 -120157588 - Lx9 LINE L1 -2 7642 7530 5 885 189 0 0 0 chr3 39442205 39442226 -120157557 + (TG)n Simple_repeat Simple_repeat 2 22 0 5 885 1664 240 123 4 chr3 39442229 39442685 -120157098 - Lx9 LINE L1 -177 7467 6958 5 885 13425 45 1 0 chr3 39442999 39445388 -120154395 - L1Md_F2 LINE L1 0 6582 4193 5 885 4403 16 2 0 chr3 39445388 39445880 -120153903 - MT2_Mm LTR ERVL 0 493 1 5 885 302 0 0 0 chr3 39445880 39445918 -120153865 - MERVL-int LTR ERVL 0 5485 5448 5 885 379 179 46 35 chr3 39445918 39446005 -120153778 - ORR1A3-int LTR MaLR -1323 640 553 5 885 45306 15 6 0 chr3 39446005 39451330 -120148453 - MERVL-int LTR ERVL -125 5360 2 5 885 4403 16 2 0 chr3 39451331 39451823 -120147960 - MT2_Mm LTR ERVL 0 493 1 5 110 23045 41 1 10 chr3 39451823 39455421 -120144362 - L1Md_A LINE L1 -1686 4197 638 5 886 360 175 48 38 chr3 39455691 39455906 -120143877 + (TAGA)n Simple_repeat Simple_repeat 1 217 0 5 886 245 237 0 17 chr3 39456834 39456894 -120142889 + (TA)n Simple_repeat Simple_repeat 2 60 0 5 886 387 350 93 0 chr3 39457753 39458010 -120141773 + Lx8 LINE L1 6867 7147 -326 5 886 339 171 0 0 chr3 39459111 39459187 -120140596 + (CA)n Simple_repeat Simple_repeat 1 76 0 5 886 273 330 124 35 chr3 39459224 39459450 -120140333 - MLT1A0 LTR MaLR -93 272 27 5 886 923 99 0 13 chr3 39461176 39461329 -120138454 + L1_Mur1 LINE L1 5173 5323 -563 5 886 471 100 0 53 chr3 39461330 39461425 -120138358 - L1Md_F2 LINE L1 0 6582 6493 5 886 2639 63 0 3 chr3 39461425 39461774 -120138009 - L1_Mm LINE L1 -119 5764 5417 5 886 1203 70 0 0 chr3 39461771 39461929 -120137854 + L1Md_F3 LINE L1 5982 6139 -443 5 886 4727 91 9 1 chr3 39461927 39462628 -120137155 + Lx3_Mus LINE L1 6120 6825 -184 5 886 1827 37 24 24 chr3 39462629 39462879 -120136904 + L1Md_F3 LINE L1 6335 6584 0 5 886 879 138 70 27 chr3 39462884 39463070 -120136713 + Lx3_Mus LINE L1 6816 7009 0 5 886 2192 225 5 66 chr3 39464760 39465349 -120134434 + RLTR31_Mur LTR ERVK 1 553 0 5 886 28 71 0 0 chr3 39466374 39466430 -120133353 + AT_rich Low_complexity Low_complexity 1 56 0 5 886 279 0 0 0 chr3 39466477 39466508 -120133275 + (TG)n Simple_repeat Simple_repeat 2 32 0 5 886 248 250 76 43 chr3 39466592 39466684 -120133099 - ORR1E LTR MaLR 0 359 265 5 886 414 0 0 0 chr3 39467124 39467170 -120132613 + (CA)n Simple_repeat Simple_repeat 1 46 0 5 886 406 149 11 11 chr3 39467184 39467272 -120132511 + GA-rich Low_complexity Low_complexity 4 91 0 6 886 6294 127 47 18 chr3 39467516 39468070 -120131713 + RLTR13D5 LTR ERVK 1 515 -508 6 886 2228 161 10 24 chr3 39468070 39468485 -120131298 + RLTR9E LTR ERVK 1 409 0 6 886 552 30 0 0 chr3 39468489 39468555 -120131228 + (TA)n Simple_repeat Simple_repeat 2 67 0 6 886 6294 116 45 18 chr3 39468555 39469007 -120130776 + RLTR13D5 LTR ERVK 516 1006 -17 6 886 342 0 0 0 chr3 39470360 39470398 -120129385 + (TG)n Simple_repeat Simple_repeat 2 39 0 6 886 212 0 36 0 chr3 39472219 39472247 -120127536 + (TTG)n Simple_repeat Simple_repeat 2 30 0 6 886 698 254 0 14 chr3 39472811 39472961 -120126822 - B1_Mur2 SINE Alu -7 142 1 6 886 474 179 0 0 chr3 39472963 39473058 -120126725 + CT-rich Low_complexity Low_complexity 3 97 0 6 886 248 242 0 15 chr3 39473223 39473290 -120126493 + CT-rich Low_complexity Low_complexity 2 67 0 6 886 1413 62 10 20 chr3 39473863 39474059 -120125724 + B2_Mm2 SINE B2 2 195 0 6 886 243 0 0 0 chr3 39474059 39474086 -120125697 + (CAAAAA)n Simple_repeat Simple_repeat 5 31 0 6 886 287 282 134 0 chr3 39474232 39474374 -120125409 - RSINE1 SINE B4 -2 163 3 6 886 867 36 0 0 chr3 39474533 39474644 -120125139 + (TC)n Simple_repeat Simple_repeat 1 111 0 6 886 225 0 0 0 chr3 39474644 39474668 -120125115 + (CA)n Simple_repeat Simple_repeat 1 25 0 6 886 2416 7 0 0 chr3 39475539 39475809 -120123974 + L1Md_A LINE L1 6313 6582 0 6 886 342 45 0 0 chr3 39477247 39477291 -120122492 + (CA)n Simple_repeat Simple_repeat 1 44 0 6 886 282 29 0 0 chr3 39477298 39477333 -120122450 + (CAGAGA)n Simple_repeat Simple_repeat 2 36 0 6 886 320 298 8 34 chr3 39477657 39477775 -120122008 + MIRb SINE MIR 150 264 -4 6 886 498 46 0 0 chr3 39479197 39479262 -120120521 + (CA)n Simple_repeat Simple_repeat 2 66 0 6 886 963 246 118 104 chr3 39479392 39479812 -120119971 - MT2A LTR ERVL -34 567 1 6 886 1096 85 0 0 chr3 39479909 39480050 -120119733 + B1_Mus2 SINE Alu 1 141 -6 6 886 1599 27 0 0 chr3 39480052 39480387 -120119396 + (GAA)n Simple_repeat Simple_repeat 1 335 0 6 886 665 346 82 66 chr3 39480421 39481117 -120118666 + L1MC3 LINE L1 6254 6960 -825 6 886 473 309 84 6 chr3 39481336 39481502 -120118281 + MTD LTR MaLR 18 196 -223 6 886 327 131 0 0 chr3 39481551 39481571 -120118212 + (TG)n Simple_repeat Simple_repeat 1 20 0 6 886 387 0 0 0 chr3 39481571 39481614 -120118169 + (TCTG)n Simple_repeat Simple_repeat 2 44 0 6 886 327 131 0 0 chr3 39481614 39481654 -120118129 + (TG)n Simple_repeat Simple_repeat 1 40 0 6 886 407 187 68 41 chr3 39481704 39481822 -120117961 + MTD LTR MaLR 300 421 0 6 886 400 89 12 12 chr3 39481822 39481902 -120117881 + (CAAAC)n Simple_repeat Simple_repeat 2 81 0 6 886 337 333 102 52 chr3 39481949 39482370 -120117413 + L1MC3 LINE L1 7070 7511 -274 6 886 32 0 0 0 chr3 39482530 39482562 -120117221 + AT_rich Low_complexity Low_complexity 1 32 0 6 886 323 325 162 0 chr3 39482577 39482694 -120117089 + B1F SINE Alu 7 142 -7 6 886 21 36 0 0 chr3 39482824 39482852 -120116931 + AT_rich Low_complexity Low_complexity 1 28 0 6 886 248 335 69 32 chr3 39484368 39484584 -120115199 - L1M4 LINE L1 -385 5794 5571 6 886 242 234 179 22 chr3 39484822 39485045 -120114738 - L1M4 LINE L1 -991 5155 4898 6 886 409 343 40 8 chr3 39485166 39485566 -120114217 - L1M4 LINE L1 -1417 4729 4317 6 886 201 266 16 0 chr3 39485680 39485744 -120114039 + CT-rich Low_complexity Low_complexity 4 68 0 6 886 453 66 0 0 chr3 39486406 39486467 -120113316 + (TG)n Simple_repeat Simple_repeat 2 62 0 6 886 232 321 62 97 chr3 39486559 39486735 -120113048 - B4A SINE B4 -120 172 3 6 886 343 83 16 16 chr3 39487075 39487136 -120112647 + (TA)n Simple_repeat Simple_repeat 2 62 0 6 886 443 274 144 29 chr3 39487180 39487319 -120112464 + RSINE1 SINE B4 5 159 -6 6 886 666 319 39 19 chr3 39487634 39487890 -120111893 - MTD LTR MaLR -135 284 24 6 886 222 37 0 0 chr3 39488572 39488599 -120111184 + (TC)n Simple_repeat Simple_repeat 1 27 0 6 886 656 279 54 10 chr3 39488767 39488970 -120110813 - B3 SINE B2 -4 212 1 6 886 180 0 0 0 chr3 39489582 39489602 -120110181 + (TA)n Simple_repeat Simple_repeat 2 21 0 6 886 468 0 0 0 chr3 39489921 39489973 -120109810 + (CA)n Simple_repeat Simple_repeat 1 52 0 6 886 26 64 0 0 chr3 39490638 39490685 -120109098 + AT_rich Low_complexity Low_complexity 1 47 0 6 886 647 318 11 6 chr3 39490706 39490880 -120108903 - B3A SINE B2 -16 182 8 6 886 22 0 0 0 chr3 39492157 39492179 -120107604 + AT_rich Low_complexity Low_complexity 1 22 0 6 886 444 319 71 63 chr3 39493323 39493734 -120106049 + BGLII_B LTR ERVK 1 414 -27 6 886 1113 155 27 0 chr3 39494306 39494493 -120105290 - URR1A DNA MER1_type -1 225 34 6 886 5256 95 15 5 chr3 39495893 39496636 -120103147 - L1_Mus3 LINE L1 -4 6634 5885 6 886 1212 99 11 0 chr3 39496636 39496827 -120102956 + L1_Mm LINE L1 3488 3680 -2203 6 886 366 86 0 0 chr3 39496826 39496884 -120102899 + L1_Mur1 LINE L1 3803 3860 -2026 6 886 1051 112 12 0 chr3 39497019 39497189 -120102594 + (TC)n Simple_repeat Simple_repeat 1 172 0 6 886 579 29 0 0 chr3 39497190 39497259 -120102524 + (TTCC)n Simple_repeat Simple_repeat 4 72 0 6 886 6252 201 40 18 chr3 39497259 39498837 -120100946 - Lx4B LINE L1 -22 7036 5415 6 886 344 131 0 14 chr3 39499446 39499516 -120100267 + (TG)n Simple_repeat Simple_repeat 1 69 0 6 886 288 287 17 85 chr3 39499677 39499795 -120099988 - MTEb LTR MaLR -269 110 1 6 886 361 315 80 46 chr3 39500009 39500448 -120099335 - L1_Mur3 LINE L1 -65 5815 5362 1 886 910 98 0 19 chr3 39500746 39500902 -120098881 + L1Md_F2 LINE L1 6398 6550 -32 2 886 33811 34 0 0 chr3 39500902 39506541 -120093242 + L1Md_T LINE L1 1 5589 -297 3 886 9043 5 0 0 chr3 39506541 39507537 -120092246 + L1Md_T LINE L1 5590 6585 0 3 886 194 0 39 0 chr3 39507657 39507683 -120092100 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 4 886 1233 54 0 0 chr3 39507689 39507836 -120091947 - B1_Mm SINE Alu 0 147 1 5 886 480 116 0 0 chr3 39509512 39509607 -120090176 - Lx3_Mus LINE L1 0 7009 6915 6 886 191 36 36 0 chr3 39510070 39510098 -120089685 + (TA)n Simple_repeat Simple_repeat 2 30 0 7 886 522 0 0 0 chr3 39510544 39510602 -120089181 + (TC)n Simple_repeat Simple_repeat 1 58 0 8 886 304 363 54 65 chr3 39511823 39512100 -120087683 + Charlie8 DNA MER1_type 17 290 -2138 9 886 236 360 110 0 chr3 39512307 39512407 -120087376 + PB1D7 SINE Alu 7 117 -3 1 886 2388 319 32 15 chr3 39513396 39514350 -120085433 + Lx8 LINE L1 6359 7329 -144 1 886 928 279 56 26 chr3 39514540 39514882 -120084901 - Lx8 LINE L1 -633 6840 6489 1 886 410 306 13 33 chr3 39514915 39515067 -120084716 - Lx8 LINE L1 -1136 6337 6189 1 886 26 0 0 0 chr3 39516416 39516442 -120083341 + AT_rich Low_complexity Low_complexity 1 26 0 1 886 242 337 71 3 chr3 39517591 39517886 -120081897 + L1MD LINE L1 4633 4947 -1199 1 886 638 157 13 8 chr3 39517889 39518042 -120081741 + (TAGA)n Simple_repeat Simple_repeat 1 153 0 1 886 210 71 0 0 chr3 39518042 39518070 -120081713 + (TG)n Simple_repeat Simple_repeat 2 29 0 1 886 220 155 40 53 chr3 39518070 39518121 -120081662 + (TAGA)n Simple_repeat Simple_repeat 2 53 0 1 886 3694 55 4 2 chr3 39518332 39518827 -120080956 - L1Md_F2 LINE L1 -114 5769 5274 1 886 5782 71 29 5 chr3 39518827 39519415 -120080368 + L1Md_F2 LINE L1 5770 6379 -203 1 886 315 0 0 0 chr3 39519415 39519450 -120080333 + (TC)n Simple_repeat Simple_repeat 2 36 0 1 886 423 0 0 0 chr3 39519450 39519496 -120080287 + (TA)n Simple_repeat Simple_repeat 2 48 0 2 886 5782 71 29 5 chr3 39519496 39519687 -120080096 + L1Md_F2 LINE L1 6380 6568 -14 1 886 420 77 0 0 chr3 39519763 39519828 -120079955 + (CA)n Simple_repeat Simple_repeat 2 66 0 2 886 433 266 148 20 chr3 39519829 39520032 -120079751 + L1MD LINE L1 4934 5162 -984 1 886 522 343 106 51 chr3 39520071 39520363 -120079420 + MTD LTR MaLR 18 325 -94 2 886 1228 124 106 0 chr3 39520365 39520583 -120079200 - Lx2A LINE L1 -876 6132 5892 2 886 5761 118 72 19 chr3 39520584 39521521 -120078262 - L1_Mus4 LINE L1 -6 6630 5628 2 886 850 186 49 11 chr3 39521521 39521706 -120078077 - B2_Mm2 SINE B2 -2 193 2 2 886 5761 189 20 18 chr3 39521706 39522319 -120077464 - L1_Mus4 LINE L1 -256 5627 5023 2 886 4626 130 7 3 chr3 39522335 39523089 -120076694 + Lx2A LINE L1 6150 6906 -102 2 886 1221 106 0 0 chr3 39523122 39523302 -120076481 + (GGA)n Simple_repeat Simple_repeat 1 180 0 2 886 1167 89 0 0 chr3 39523333 39523512 -120076271 + (GAA)n Simple_repeat Simple_repeat 2 180 0 2 886 471 90 0 0 chr3 39523512 39523590 -120076193 + (CAA)n Simple_repeat Simple_repeat 1 78 0 2 886 272 325 5 0 chr3 39523600 39523685 -120076098 + MTD LTR MaLR 290 407 -14 2 886 282 251 117 25 chr3 39523829 39524025 -120075758 + L1M5 LINE L1 5464 5677 -767 3 886 4397 123 33 21 chr3 39524146 39524852 -120074931 + Lx LINE L1 5929 6642 -12 3 886 228 317 49 0 chr3 39524870 39525012 -120074771 + L1MD1 LINE L1 5811 5959 -283 3 886 233 256 54 22 chr3 39525524 39525616 -120074167 + L1MD1 LINE L1 6128 6222 -20 3 886 588 14 0 0 chr3 39525845 39525914 -120073869 + (TG)n Simple_repeat Simple_repeat 1 69 0 3 886 300 357 12 6 chr3 39527541 39527713 -120072070 + GA-rich Low_complexity Low_complexity 1 173 0 3 886 244 383 13 0 chr3 39530213 39530306 -120069477 - B1F SINE Alu -55 94 1 3 886 27 49 0 0 chr3 39530729 39530770 -120069013 + AT_rich Low_complexity Low_complexity 1 41 0 3 886 228 253 0 0 chr3 39530772 39530847 -120068936 + (TG)n Simple_repeat Simple_repeat 2 76 0 3 886 560 285 25 45 chr3 39530852 39531054 -120068729 - B3A SINE B2 -13 203 6 3 886 321 268 215 23 chr3 39531539 39531669 -120068114 + B3A SINE B2 3 157 -41 3 886 702 69 0 0 chr3 39531679 39531780 -120068003 + (CA)n Simple_repeat Simple_repeat 2 102 0 4 886 21 57 0 0 chr3 39532096 39532131 -120067652 + AT_rich Low_complexity Low_complexity 1 35 0 4 886 657 110 0 80 chr3 39532131 39532269 -120067514 - Lx3B LINE L1 0 6981 6855 4 886 2110 104 59 9 chr3 39532269 39532609 -120067174 - Lx3B LINE L1 -478 6495 6139 4 886 282 247 54 43 chr3 39533770 39533863 -120065920 + B3A SINE B2 2 95 -103 4 886 22 0 0 0 chr3 39533878 39533900 -120065883 + AT_rich Low_complexity Low_complexity 1 22 0 4 886 350 355 14 22 chr3 39534357 39534495 -120065288 + B1_Mus2 SINE Alu 1 137 -10 4 886 225 0 0 0 chr3 39534495 39534520 -120065263 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 4 886 967 59 0 0 chr3 39534885 39535003 -120064780 - 5S rRNA rRNA -2 119 2 4 886 233 247 0 0 chr3 39535122 39535195 -120064588 - Charlie4a DNA MER1_type -66 442 370 4 886 580 315 18 6 chr3 39537741 39537904 -120061879 - RSINE1 SINE B4 0 165 1 4 886 913 312 41 22 chr3 39537968 39538466 -120061317 + Lx9 LINE L1 6879 7514 -130 5 886 253 167 45 15 chr3 39538475 39538542 -120061241 + (TATG)n Simple_repeat Simple_repeat 4 72 0 5 886 468 206 0 0 chr3 39538593 39538729 -120061054 + (TG)n Simple_repeat Simple_repeat 1 136 0 5 886 313 75 38 0 chr3 39538728 39538781 -120061002 + (GA)n Simple_repeat Simple_repeat 1 55 0 5 886 335 317 77 111 chr3 39538806 39538987 -120060796 - B3A SINE B2 -22 176 2 5 886 640 310 131 34 chr3 39538995 39539577 -120060206 - L1MD LINE L1 -1386 4760 4123 5 886 384 293 93 44 chr3 39539581 39539931 -120059852 + MLT2B2 LTR ERVL 3 430 -90 5 886 721 104 28 7 chr3 39539983 39540128 -120059655 + (TA)n Simple_repeat Simple_repeat 2 149 0 5 886 241 82 20 20 chr3 39540304 39540354 -120059429 + (TTTG)n Simple_repeat Simple_repeat 3 52 0 5 886 398 315 152 23 chr3 39540599 39541165 -120058618 - L1MD LINE L1 -3065 3081 2443 5 886 308 325 53 29 chr3 39541185 39541356 -120058427 - L1MDa LINE L1 -3751 2786 2612 5 886 1025 331 103 25 chr3 39541944 39542690 -120057093 - L1MDa LINE L1 -4354 2279 1463 5 886 247 342 46 20 chr3 39542690 39542842 -120056941 - RSINE1 SINE B4 -6 159 4 6 886 1025 331 103 25 chr3 39542842 39543019 -120056764 - L1MDa LINE L1 -5171 1462 1284 5 886 242 284 31 39 chr3 39543039 39543167 -120056616 - L1MDa LINE L1 -5282 1258 1132 5 886 533 289 14 14 chr3 39544411 39544567 -120055216 + MLT1A0 LTR MaLR 208 406 -2 6 886 286 352 54 15 chr3 39544893 39545023 -120054760 + ID_B1 SINE B4 3 137 -87 6 886 231 256 24 24 chr3 39545024 39545108 -120054675 + B4A SINE B4 163 246 -46 6 886 228 268 40 24 chr3 39545145 39545271 -120054512 + L1MC4 LINE L1 5872 5999 -2043 6 886 4101 47 0 0 chr3 39545436 39545929 -120053854 + L1Md_F2 LINE L1 6089 6581 -1 6 886 468 183 0 0 chr3 39546008 39546101 -120053682 + CT-rich Low_complexity Low_complexity 1 93 0 6 886 427 261 71 25 chr3 39547096 39547223 -120052560 - Lx5 LINE L1 -1 7057 6902 6 886 381 43 0 0 chr3 39547223 39547270 -120052513 + (CCA)n Simple_repeat Simple_repeat 3 49 0 6 886 427 248 69 15 chr3 39547270 39547312 -120052471 - Lx5 LINE L1 -149 6901 6860 6 886 4463 196 17 22 chr3 39547322 39548306 -120051477 - Lx5 LINE L1 -356 6694 5716 6 886 429 341 89 6 chr3 39548308 39548476 -120051307 - ID_B1 SINE B4 -24 200 19 6 886 225 0 0 0 chr3 39548499 39548524 -120051259 + (TC)n Simple_repeat Simple_repeat 2 26 0 7 886 1012 210 27 9 chr3 39548708 39548929 -120050854 - URR1B DNA MER1_type 0 225 1 7 886 333 100 0 0 chr3 39548933 39548983 -120050800 + (CAGA)n Simple_repeat Simple_repeat 2 51 0 7 886 496 284 156 106 chr3 39549965 39550324 -120049459 - MTE2a LTR MaLR -2 377 1 7 886 33 56 0 0 chr3 39550598 39550652 -120049131 + AT_rich Low_complexity Low_complexity 1 54 0 7 886 209 89 43 22 chr3 39550786 39550832 -120048951 + (TA)n Simple_repeat Simple_repeat 1 47 0 7 886 415 153 0 0 chr3 39550837 39550909 -120048874 - URR1A DNA MER1_type -85 141 70 7 886 192 102 61 0 chr3 39551006 39551055 -120048728 + (TA)n Simple_repeat Simple_repeat 2 53 0 7 886 22 35 0 0 chr3 39551055 39551084 -120048699 + AT_rich Low_complexity Low_complexity 1 29 0 7 886 26 0 0 0 chr3 39551354 39551380 -120048403 + AT_rich Low_complexity Low_complexity 1 26 0 7 886 22 0 0 0 chr3 39551648 39551670 -120048113 + AT_rich Low_complexity Low_complexity 1 22 0 8 886 2927 246 61 111 chr3 39551785 39552946 -120046837 - RLTR25A LTR ERVK 0 1103 1 8 886 732 195 57 0 chr3 39553143 39553302 -120046481 - URR1A DNA MER1_type 0 226 59 8 886 477 0 0 0 chr3 39554107 39554160 -120045623 + (TA)n Simple_repeat Simple_repeat 1 53 0 8 886 601 311 39 11 chr3 39554282 39554464 -120045319 + ID_B1 SINE B4 14 200 -24 8 886 206 182 0 22 chr3 39554550 39554595 -120045188 + (TAA)n Simple_repeat Simple_repeat 3 46 0 8 886 2541 155 17 20 chr3 39554689 39555149 -120044634 + RMER6B LTR ERVK 1 459 -2 8 886 197 108 0 26 chr3 39555221 39555259 -120044524 + (CTTG)n Simple_repeat Simple_repeat 4 40 0 8 886 32285 102 25 18 chr3 39556494 39562645 -120037138 - L1Md_F2 LINE L1 -263 6319 244 8 886 207 0 0 0 chr3 39562645 39562668 -120037115 + (TG)n Simple_repeat Simple_repeat 1 23 0 8 886 711 216 211 38 chr3 39562668 39562696 -120037087 - L1Md_F2 LINE L1 -6364 274 248 8 886 374 312 24 0 chr3 39563930 39564055 -120035728 + B1F2 SINE Alu 9 136 -13 9 886 369 62 0 0 chr3 39564082 39564130 -120035653 + (TAAA)n Simple_repeat Simple_repeat 1 48 0 9 886 282 125 0 0 chr3 39565052 39565100 -120034683 + (TG)n Simple_repeat Simple_repeat 2 49 0 9 886 741 230 12 0 chr3 39565209 39565370 -120034413 + U1 snRNA snRNA 1 163 -2 9 886 243 140 0 0 chr3 39565383 39565433 -120034350 + (GGAA)n Simple_repeat Simple_repeat 3 52 0 9 886 185 0 40 0 chr3 39566582 39566607 -120033176 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 9 886 1041 61 38 0 chr3 39566607 39566739 -120033044 - B1_Mm SINE Alu -9 138 2 9 886 189 0 0 0 chr3 39567049 39567070 -120032713 + (CCCCCA)n Simple_repeat Simple_repeat 3 23 0 9 886 2731 127 2 18 chr3 39567098 39567547 -120032236 - Lx3A LINE L1 -372 6609 6168 9 886 449 0 0 35 chr3 39567550 39567608 -120032175 + (TTTA)n Simple_repeat Simple_repeat 4 59 0 9 886 369 0 0 0 chr3 39567814 39567855 -120031928 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 886 535 282 112 53 chr3 39568386 39568573 -120031210 - B3A SINE B2 0 198 1 1 886 2050 172 81 15 chr3 39568657 39569052 -120030731 + MTC LTR MaLR 1 421 0 1 886 5991 108 11 16 chr3 39569138 39570030 -120029753 + Lx LINE L1 5760 6647 -7 1 886 433 175 14 0 chr3 39570047 39570139 -120029644 + B3A SINE B2 86 183 -33 1 886 198 191 0 0 chr3 39570435 39570482 -120029301 + (CA)n Simple_repeat Simple_repeat 1 47 0 1 886 624 62 0 0 chr3 39570906 39570987 -120028796 + (TAGA)n Simple_repeat Simple_repeat 2 82 0 1 886 456 19 0 0 chr3 39572658 39572711 -120027072 + (TC)n Simple_repeat Simple_repeat 1 53 0 1 886 534 16 0 0 chr3 39572711 39572773 -120027010 + (CA)n Simple_repeat Simple_repeat 1 63 0 1 886 1127 267 94 14 chr3 39572830 39573180 -120026603 - MTD LTR MaLR 0 419 42 1 886 574 192 7 7 chr3 39573229 39573376 -120026407 + (CA)n Simple_repeat Simple_repeat 1 147 0 1 886 886 263 71 20 chr3 39574128 39574380 -120025403 + ORR1E LTR MaLR 89 353 -6 1 886 234 0 0 0 chr3 39575010 39575036 -120024747 + (TTTTG)n Simple_repeat Simple_repeat 4 29 0 1 886 26 30 0 0 chr3 39575991 39576024 -120023759 + AT_rich Low_complexity Low_complexity 1 33 0 1 886 23 33 0 0 chr3 39576055 39576085 -120023698 + AT_rich Low_complexity Low_complexity 1 30 0 1 886 242 299 16 8 chr3 39576183 39576311 -120023472 + L1M2 LINE L1 5793 5921 -370 1 886 1798 258 56 8 chr3 39576316 39576797 -120022986 + RMER20A LTR ERVK 13 516 0 1 886 435 78 0 0 chr3 39577552 39577616 -120022167 + (TG)n Simple_repeat Simple_repeat 2 65 0 1 886 251 158 0 17 chr3 39577693 39577751 -120022032 + Lx7 LINE L1 7639 7695 -1 1 886 21 0 0 0 chr3 39577924 39577945 -120021838 + AT_rich Low_complexity Low_complexity 1 21 0 1 886 11892 244 142 54 chr3 39577956 39580225 -120019558 - Lx5 LINE L1 -18 7032 4734 1 886 2822 176 161 14 chr3 39580225 39580882 -120018901 + RMER6A LTR ERVK 1 754 -2 1 886 11892 195 222 14 chr3 39580882 39582165 -120017618 - Lx5 LINE L1 -1147 4733 3317 1 886 369 0 0 0 chr3 39582165 39582206 -120017577 + (TA)n Simple_repeat Simple_repeat 1 41 0 1 886 342 0 0 0 chr3 39582206 39582243 -120017540 + (GA)n Simple_repeat Simple_repeat 2 39 0 1 886 11892 195 222 14 chr3 39582243 39582979 -120016804 - Lx5 LINE L1 -2564 3316 2034 1 886 471 18 0 0 chr3 39582979 39583035 -120016748 + (TG)n Simple_repeat Simple_repeat 1 56 0 1 110 11892 202 169 23 chr3 39583035 39584178 -120015605 - Lx5 LINE L1 -3847 2033 892 1 887 1144 107 33 11 chr3 39584214 39584394 -120015389 + L1_Mus3 LINE L1 6454 6637 -1 1 887 24 0 0 0 chr3 39585494 39585518 -120014265 + AT_rich Low_complexity Low_complexity 1 24 0 1 887 1616 238 9 9 chr3 39586006 39586333 -120013450 + MT2A LTR ERVL 1 327 -206 1 887 31 26 0 0 chr3 39586967 39587005 -120012778 + AT_rich Low_complexity Low_complexity 1 38 0 1 887 254 296 25 0 chr3 39587683 39587764 -120012019 + (TG)n Simple_repeat Simple_repeat 2 84 0 1 887 482 0 17 0 chr3 39588109 39588167 -120011616 + (TG)n Simple_repeat Simple_repeat 1 59 0 1 887 399 113 0 0 chr3 39588167 39588238 -120011545 + (GA)n Simple_repeat Simple_repeat 2 72 0 1 887 986 27 47 0 chr3 39591670 39591820 -120007963 + (TC)n Simple_repeat Simple_repeat 2 158 0 1 887 26 0 0 0 chr3 39591876 39591902 -120007881 + AT_rich Low_complexity Low_complexity 1 26 0 1 887 681 13 0 0 chr3 39593330 39593408 -120006375 + (TC)n Simple_repeat Simple_repeat 1 78 0 1 887 301 375 16 52 chr3 39593412 39593606 -120006177 - B3 SINE B2 -29 187 1 1 887 216 0 0 0 chr3 39593674 39593698 -120006085 + (A)n Simple_repeat Simple_repeat 1 24 0 1 887 1072 288 42 33 chr3 39594087 39594540 -120005243 - Lx9 LINE L1 -274 7370 6914 1 887 413 282 8 25 chr3 39594624 39594744 -120005039 - Lx8 LINE L1 -713 6760 6643 1 887 4332 83 22 15 chr3 39595226 39595827 -120003956 - L1_Mus4 LINE L1 -13 6623 6019 1 887 40 59 0 0 chr3 39595867 39595935 -120003848 + AT_rich Low_complexity Low_complexity 1 68 0 1 887 2969 88 7 12 chr3 39597315 39597738 -120002045 + L1_Mus4 LINE L1 6211 6631 -5 1 887 189 94 0 0 chr3 39597951 39597983 -120001800 + (T)n Simple_repeat Simple_repeat 1 32 0 1 887 260 350 66 4 chr3 39598934 39599161 -120000622 - L1MB3 LINE L1 -143 6040 5800 1 887 536 203 8 0 chr3 39599166 39599426 -120000357 + (TG)n Simple_repeat Simple_repeat 1 262 0 1 887 597 340 81 4 chr3 39599944 39600180 -119999603 + B4 SINE B4 34 287 -5 1 887 907 261 8 12 chr3 39600205 39600457 -119999326 - Lx9 LINE L1 -128 7516 7266 1 887 552 317 58 24 chr3 39600457 39600664 -119999119 - B3 SINE B2 -2 214 1 1 887 3459 134 26 9 chr3 39600695 39601239 -119998544 - Lx2 LINE L1 -2 6995 6443 1 887 3716 135 21 3 chr3 39601239 39601894 -119997889 + MusHAL1 LINE L1 958 1624 -1088 1 887 717 234 0 0 chr3 39601899 39602143 -119997640 + (CATATA)n Simple_repeat Simple_repeat 1 244 0 1 887 2303 77 3 0 chr3 39602147 39602486 -119997297 + MusHAL1 LINE L1 1614 1953 -759 1 887 393 315 19 0 chr3 39602514 39602676 -119997107 - L1MB3 LINE L1 -1124 5016 4852 1 887 468 0 0 0 chr3 39603035 39603087 -119996696 + (TA)n Simple_repeat Simple_repeat 1 52 0 1 887 613 197 8 32 chr3 39603417 39603543 -119996240 + B1_Mur3 SINE Alu 27 149 0 1 887 535 266 61 34 chr3 39603562 39603699 -119996084 + B3 SINE B2 8 150 -66 1 887 597 100 0 0 chr3 39603699 39603789 -119995994 + (CA)n Simple_repeat Simple_repeat 1 90 0 1 887 235 335 42 19 chr3 39603881 39604146 -119995637 - L1MB3 LINE L1 -1588 4555 4285 1 887 281 268 106 6 chr3 39604208 39604399 -119995384 + L1M3 LINE L1 5285 5494 -797 1 887 560 270 31 19 chr3 39604637 39604799 -119994984 + B3A SINE B2 35 198 0 1 887 414 57 0 0 chr3 39606333 39606386 -119993397 + (TCTA)n Simple_repeat Simple_repeat 4 56 0 1 887 222 156 45 30 chr3 39606390 39606456 -119993327 + (CATATA)n Simple_repeat Simple_repeat 3 69 0 1 887 843 297 79 15 chr3 39606563 39607235 -119992548 + L1M4 LINE L1 4229 4943 -1203 1 887 3609 209 56 99 chr3 39607707 39609109 -119990674 + RMER1A Other Other 1 1026 -4 1 887 2647 257 43 26 chr3 39609385 39610196 -119989587 - RCHARR1 DNA MER1_type -1 973 149 1 887 728 243 52 6 chr3 39610189 39610363 -119989420 + MTD LTR MaLR 224 405 -14 1 887 384 22 0 0 chr3 39610499 39610544 -119989239 + (CA)n Simple_repeat Simple_repeat 1 45 0 1 887 655 292 32 38 chr3 39612506 39612691 -119987092 + ID_B1 SINE B4 35 218 -6 1 887 492 18 0 0 chr3 39612723 39612780 -119987003 + (TC)n Simple_repeat Simple_repeat 1 57 0 1 887 558 41 0 0 chr3 39613464 39613537 -119986246 + (GA)n Simple_repeat Simple_repeat 1 73 0 1 887 582 247 25 110 chr3 39613628 39613814 -119985969 + B3A SINE B2 3 176 -22 1 887 6768 105 97 16 chr3 39613814 39614032 -119985751 + Lx3_Mus LINE L1 5814 6034 -975 1 887 836 25 24 24 chr3 39614032 39614156 -119985627 + (GGGA)n Simple_repeat Simple_repeat 1 124 0 1 887 6768 105 97 16 chr3 39614156 39615044 -119984739 + Lx3_Mus LINE L1 6035 7008 -1 1 887 488 247 25 110 chr3 39615044 39615057 -119984726 + B2_Mm2 SINE B2 174 185 -10 1 887 429 212 19 116 chr3 39616520 39616563 -119983220 + MT2B2 LTR ERVL 125 152 -432 1 887 945 59 0 0 chr3 39616563 39616681 -119983102 + B1_Mm SINE Alu 1 118 -29 1 887 518 332 45 119 chr3 39617149 39617621 -119982162 - MER67D LTR ERV1 -77 437 1 1 887 198 0 0 0 chr3 39617754 39617776 -119982007 + (TG)n Simple_repeat Simple_repeat 2 23 0 1 887 1909 145 65 68 chr3 39620353 39620708 -119979075 - ORR1B1 LTR MaLR 0 394 41 1 887 183 42 0 0 chr3 39621049 39621073 -119978710 + (CAA)n Simple_repeat Simple_repeat 2 25 0 1 887 24 0 0 0 chr3 39621306 39621330 -119978453 + AT_rich Low_complexity Low_complexity 1 24 0 1 887 509 134 52 0 chr3 39622230 39622403 -119977380 + (TAGA)n Simple_repeat Simple_repeat 1 182 0 1 887 21 36 0 0 chr3 39622481 39622509 -119977274 + AT_rich Low_complexity Low_complexity 1 28 0 1 887 223 269 18 9 chr3 39623111 39623220 -119976563 + (TA)n Simple_repeat Simple_repeat 1 110 0 1 887 536 299 19 72 chr3 39624430 39624639 -119975144 - B3A SINE B2 0 198 1 1 887 955 312 9 37 chr3 39625563 39625912 -119973871 + Lx5 LINE L1 6697 7035 -15 1 887 42 36 0 0 chr3 39626158 39626214 -119973569 + AT_rich Low_complexity Low_complexity 1 56 0 1 887 435 167 0 0 chr3 39626384 39626474 -119973309 + (TG)n Simple_repeat Simple_repeat 2 91 0 1 887 694 134 39 0 chr3 39626826 39626953 -119972830 + MYSERV16_I-int LTR ERVK 1115 1246 -1080 1 887 21 0 0 0 chr3 39627094 39627115 -119972668 + AT_rich Low_complexity Low_complexity 1 21 0 1 887 423 98 0 0 chr3 39627985 39628046 -119971737 + (A)n Simple_repeat Simple_repeat 1 61 0 1 887 222 37 0 0 chr3 39628423 39628450 -119971333 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 1 887 530 29 15 0 chr3 39629083 39629151 -119970632 + (CA)n Simple_repeat Simple_repeat 2 70 0 1 887 186 43 0 0 chr3 39631255 39631278 -119968505 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1 887 228 255 142 75 chr3 39631742 39631848 -119967935 + B1F SINE Alu 29 141 -8 1 887 180 0 0 0 chr3 39631866 39631886 -119967897 + (ATG)n Simple_repeat Simple_repeat 3 22 0 1 887 865 80 12 18 chr3 39631886 39632051 -119967732 + (TAGA)n Simple_repeat Simple_repeat 2 165 0 1 887 25 51 0 0 chr3 39632644 39632683 -119967100 + AT_rich Low_complexity Low_complexity 1 39 0 1 887 521 366 6 6 chr3 39632712 39632874 -119966909 - RSINE1 SINE B4 0 165 4 1 887 23 0 0 0 chr3 39634277 39634300 -119965483 + AT_rich Low_complexity Low_complexity 1 23 0 1 887 22 35 0 0 chr3 39634443 39634472 -119965311 + AT_rich Low_complexity Low_complexity 1 29 0 1 887 346 217 22 54 chr3 39634572 39634653 -119965130 + (TATATG)n Simple_repeat Simple_repeat 3 83 0 1 887 191 88 29 0 chr3 39634653 39634687 -119965096 + (TG)n Simple_repeat Simple_repeat 1 35 0 1 887 346 217 22 54 chr3 39634687 39634828 -119964955 + (TATATG)n Simple_repeat Simple_repeat 1 136 0 1 887 333 287 30 6 chr3 39634901 39635134 -119964649 + (TATATG)n Simple_repeat Simple_repeat 1 238 0 2 887 323 247 28 50 chr3 39635155 39635334 -119964449 + (TATATG)n Simple_repeat Simple_repeat 4 178 0 2 887 538 291 120 38 chr3 39635870 39636295 -119963488 - L1_Rod LINE L1 -296 5551 5092 2 887 335 318 23 23 chr3 39636487 39636745 -119963038 + Lx9 LINE L1 7245 7502 -142 2 887 392 0 21 0 chr3 39636764 39636812 -119962971 + (TG)n Simple_repeat Simple_repeat 2 50 0 2 887 337 224 45 26 chr3 39637553 39637709 -119962074 + (CATATA)n Simple_repeat Simple_repeat 2 160 0 2 887 225 0 0 0 chr3 39637952 39637977 -119961806 + (TAAA)n Simple_repeat Simple_repeat 3 27 0 2 887 264 293 102 30 chr3 39638165 39638362 -119961421 + L1MC3 LINE L1 6328 6538 -1247 2 887 225 287 9 47 chr3 39638359 39638465 -119961318 + L1MC3 LINE L1 6641 6742 -1253 2 887 1313 267 100 17 chr3 39638716 39639184 -119960599 - Lx7 LINE L1 -314 7382 6876 2 887 24 0 0 0 chr3 39641203 39641227 -119958556 + AT_rich Low_complexity Low_complexity 1 24 0 2 887 3160 204 65 49 chr3 39641235 39641796 -119957987 + RLTR40 LTR ERVK 1 567 -250 2 887 489 47 0 0 chr3 39641796 39641860 -119957923 + (CA)n Simple_repeat Simple_repeat 2 65 0 2 887 3160 204 65 49 chr3 39641860 39642098 -119957685 + RLTR40 LTR ERVK 568 813 -4 2 887 369 276 0 0 chr3 39642166 39642242 -119957541 + B4 SINE B4 196 271 -21 2 887 2076 226 90 2 chr3 39643695 39644241 -119955542 - Lx9 LINE L1 0 7644 7051 2 887 351 0 0 0 chr3 39644356 39644395 -119955388 + (TG)n Simple_repeat Simple_repeat 1 39 0 2 887 194 33 67 0 chr3 39644907 39644937 -119954846 + (CAAAA)n Simple_repeat Simple_repeat 3 34 0 2 887 1207 226 88 12 chr3 39645128 39645469 -119954314 + ORR1D2 LTR MaLR 2 368 -2 2 887 225 345 0 11 chr3 39646314 39646405 -119953378 + CT-rich Low_complexity Low_complexity 5 94 0 2 887 284 355 41 55 chr3 39647511 39647524 -119952259 + ID_B1 SINE B4 80 152 -72 2 887 388 341 24 0 chr3 39647524 39647647 -119952136 + B1F SINE Alu 13 138 -11 2 887 570 29 0 0 chr3 39648056 39648124 -119951659 + (TA)n Simple_repeat Simple_repeat 2 69 0 2 887 581 262 8 0 chr3 39649654 39649780 -119950003 + B3 SINE B2 1 127 -89 2 887 396 59 0 0 chr3 39649903 39649954 -119949829 + (CA)n Simple_repeat Simple_repeat 2 52 0 2 887 406 276 50 41 chr3 39650584 39650628 -119949155 - B3 SINE B2 0 216 177 2 887 336 24 0 0 chr3 39650628 39650669 -119949114 + (TG)n Simple_repeat Simple_repeat 2 42 0 2 887 406 276 50 41 chr3 39650669 39650745 -119949038 - B3 SINE B2 -40 176 96 2 887 33095 81 5 6 chr3 39650747 39656872 -119942911 - L1Md_F2 LINE L1 0 6582 467 2 887 448 202 96 0 chr3 39656879 39656973 -119942810 - B3 SINE B2 -112 104 2 2 887 7282 71 6 2 chr3 39657155 39658252 -119941531 + L1_Mus2 LINE L1 5467 6566 0 2 887 365 304 47 20 chr3 39658408 39658556 -119941227 + MLT1A0 LTR MaLR 10 161 -204 2 887 296 237 25 38 chr3 39659328 39659407 -119940376 + ID4 SINE ID 1 78 -5 2 887 463 272 67 91 chr3 39659507 39659717 -119940066 + B4A SINE B4 2 206 -86 2 887 519 17 0 0 chr3 39659769 39659829 -119939954 + (CA)n Simple_repeat Simple_repeat 2 61 0 2 887 186 233 16 62 chr3 39659846 39659910 -119939873 + L2c LINE L2 3116 3176 -211 2 887 270 0 0 0 chr3 39660943 39660973 -119938810 + (TC)n Simple_repeat Simple_repeat 2 31 0 2 887 333 0 0 0 chr3 39660974 39661011 -119938772 + (CA)n Simple_repeat Simple_repeat 2 38 0 2 887 216 0 0 0 chr3 39661015 39661039 -119938744 + (CAGAGA)n Simple_repeat Simple_repeat 1 24 0 2 887 679 241 155 0 chr3 39661041 39661215 -119938568 - ID_B1 SINE B4 -22 202 2 2 887 398 335 101 20 chr3 39662213 39662411 -119937372 - B3 SINE B2 -1 215 2 2 887 25 0 0 0 chr3 39663705 39663730 -119936053 + AT_rich Low_complexity Low_complexity 1 25 0 2 887 984 199 168 16 chr3 39664419 39664740 -119935043 - Lx9 LINE L1 -8 7636 7267 2 887 1280 117 20 10 chr3 39664777 39665072 -119934711 + (TAGA)n Simple_repeat Simple_repeat 1 297 0 2 887 240 308 148 29 chr3 39665427 39665671 -119934112 + L1MEb LINE L1 275 547 -5523 2 887 477 34 0 0 chr3 39666390 39666449 -119933334 + (GA)n Simple_repeat Simple_repeat 1 59 0 2 887 202 137 19 19 chr3 39666449 39666473 -119933310 + polypurine Low_complexity Low_complexity 2 24 0 2 887 1559 6 0 6 chr3 39666473 39666654 -119933129 + (GAA)n Simple_repeat Simple_repeat 1 180 0 2 887 202 137 19 19 chr3 39666654 39666681 -119933102 + polypurine Low_complexity Low_complexity 25 52 0 2 887 259 331 31 0 chr3 39666948 39667078 -119932705 - L1MA6 LINE L1 -29 6271 6138 2 887 471 75 0 0 chr3 39667079 39667146 -119932637 + Lx2 LINE L1 6307 6373 -624 2 887 798 11 0 0 chr3 39667297 39667388 -119932395 + (TC)n Simple_repeat Simple_repeat 2 92 0 2 887 363 366 21 64 chr3 39667389 39667529 -119932254 - RSINE1 SINE B4 -28 137 4 2 887 980 283 42 32 chr3 39667556 39667935 -119931848 + Lx9 LINE L1 7113 7495 -149 2 887 263 290 260 43 chr3 39669399 39669585 -119930198 + B4 SINE B4 9 245 -47 2 887 1958 120 174 36 chr3 39669585 39669941 -119929842 - RLTR44A LTR ERVK 0 405 1 2 887 263 290 260 43 chr3 39669941 39669985 -119929798 + B4 SINE B4 246 289 -3 2 887 297 0 0 0 chr3 39670005 39670038 -119929745 + (TA)n Simple_repeat Simple_repeat 1 33 0 2 887 207 69 0 0 chr3 39670038 39670066 -119929717 + (CA)n Simple_repeat Simple_repeat 2 30 0 2 887 204 40 0 0 chr3 39670676 39670701 -119929082 + (A)n Simple_repeat Simple_repeat 1 25 0 2 887 213 268 56 0 chr3 39671178 39671249 -119928534 + (CATG)n Simple_repeat Simple_repeat 3 77 0 2 887 270 300 12 0 chr3 39671968 39672048 -119927735 + B1_Mus1 SINE Alu 10 90 -58 2 887 627 235 129 6 chr3 39674831 39675002 -119924781 + B4 SINE B4 81 272 -20 2 887 201 39 0 0 chr3 39675019 39675045 -119924738 + (CA)n Simple_repeat Simple_repeat 1 26 0 2 887 22 35 0 0 chr3 39675170 39675199 -119924584 + AT_rich Low_complexity Low_complexity 1 29 0 2 887 918 205 82 10 chr3 39676096 39676303 -119923480 + ORR1E LTR MaLR 1 222 -137 2 887 606 95 0 0 chr3 39676303 39676387 -119923396 - L1_Mm LINE L1 -333 5550 5467 2 887 245 331 177 61 chr3 39676560 39676888 -119922895 - MLT1A LTR MaLR 0 374 9 2 887 420 299 112 56 chr3 39676914 39677307 -119922476 - L1MEc LINE L1 -3932 2468 2054 2 887 423 0 0 0 chr3 39678401 39678448 -119921335 + (TG)n Simple_repeat Simple_repeat 2 48 0 2 887 524 335 40 0 chr3 39681322 39681495 -119918288 + MT2A LTR ERVL 282 461 -72 2 887 1993 173 6 0 chr3 39681521 39681850 -119917933 + ORR1B1 LTR MaLR 1 331 -63 2 887 534 318 69 58 chr3 39682730 39682990 -119916793 - B4 SINE B4 -1 291 29 2 887 539 262 95 41 chr3 39683139 39683286 -119916497 + RSINE1 SINE B4 11 165 0 2 887 222 281 0 17 chr3 39683407 39683465 -119916318 - B1F SINE Alu -2 147 91 2 887 1451 63 5 5 chr3 39683465 39683671 -119916112 - L1_Mus2 LINE L1 -42 6524 6319 2 887 285 203 17 0 chr3 39683671 39683730 -119916053 - PB1D9 SINE Alu -55 65 6 2 887 400 184 10 10 chr3 39684508 39684612 -119915171 + GA-rich Low_complexity Low_complexity 3 106 0 2 887 944 199 40 27 chr3 39685028 39685250 -119914533 - URR1B DNA MER1_type 0 225 1 2 887 462 323 31 24 chr3 39685807 39686061 -119913722 - L1MC2 LINE L1 -388 5956 5701 2 887 231 316 60 43 chr3 39686177 39686412 -119913371 - L1MC2 LINE L1 -841 5305 5067 2 887 3188 50 25 0 chr3 39686438 39686839 -119912944 - RLTR10A LTR ERVK 0 411 1 2 887 4282 84 63 15 chr3 39686839 39687506 -119912277 - RLTR10-int LTR ERVK -1 1986 1288 2 887 1591 57 0 0 chr3 39687507 39687718 -119912065 - IAP-d-int LTR ERVK -658 5884 5674 2 887 3423 64 78 12 chr3 39687730 39688219 -119911564 - IAP-d-int LTR ERVK -1015 5527 5007 2 887 325 161 0 0 chr3 39688220 39688276 -119911507 - IAP-d-int LTR ERVK -6040 502 447 2 887 429 308 24 24 chr3 39688295 39688548 -119911235 - IAP-d-int LTR ERVK -5481 1061 847 2 887 4886 67 24 9 chr3 39688713 39689392 -119910391 - RLTR10-int LTR ERVK -995 992 304 2 887 3086 60 28 0 chr3 39689394 39689794 -119909989 - RLTR10A LTR ERVK 0 411 1 2 887 3329 174 36 32 chr3 39690101 39690250 -119909533 + RMER6C LTR ERVK 1 155 -535 2 887 6201 137 14 19 chr3 39690250 39690972 -119908811 - Lx3B LINE L1 -4 6969 6247 2 887 3628 55 4 108 chr3 39690972 39691526 -119908257 + RLTR44C LTR ERVK 3 498 -4 2 887 6201 137 14 19 chr3 39691526 39691850 -119907933 - Lx3B LINE L1 -727 6246 5928 2 887 3329 174 36 32 chr3 39691850 39692387 -119907396 + RMER6C LTR ERVK 156 690 0 2 887 25 0 0 0 chr3 39693570 39693595 -119906188 + AT_rich Low_complexity Low_complexity 1 25 0 2 887 316 291 100 25 chr3 39694036 39694156 -119905627 + L1MEg LINE L1 237 365 -5719 2 887 269 388 6 30 chr3 39694416 39694581 -119905202 + LTR16E1 LTR ERVL 338 498 -40 2 887 348 283 102 20 chr3 39694687 39695194 -119904589 + L1M2 LINE L1 4929 5478 -822 2 887 1308 65 35 0 chr3 39696379 39696549 -119903234 - B2_Mm2 SINE B2 -17 178 3 2 887 305 47 23 0 chr3 39697009 39697052 -119902731 + (TAAAA)n Simple_repeat Simple_repeat 1 44 0 2 887 522 0 0 0 chr3 39697125 39697183 -119902600 + (TC)n Simple_repeat Simple_repeat 1 58 0 2 887 254 179 0 0 chr3 39697183 39697222 -119902561 - B1_Mus1 SINE Alu -107 41 3 2 887 773 216 95 50 chr3 39697250 39697450 -119902333 - B3 SINE B2 0 216 8 2 887 1527 251 63 37 chr3 39697455 39698154 -119901629 - RMER1B Other Other -588 478 23 2 887 432 0 0 0 chr3 39698660 39698708 -119901075 + (TTTTG)n Simple_repeat Simple_repeat 3 50 0 2 887 452 184 20 10 chr3 39698938 39699037 -119900746 + RLTR12B LTR ERVK 47 146 -382 2 887 846 313 20 20 chr3 39699061 39699403 -119900380 - Lx9 LINE L1 -206 7438 7097 2 887 1116 237 52 39 chr3 39699410 39699717 -119900066 + Lx9 LINE L1 6784 7094 -550 2 887 318 290 78 49 chr3 39699757 39700000 -119899783 - Lx8 LINE L1 -21 7452 7203 2 887 732 145 34 0 chr3 39700073 39700190 -119899593 - B1_Mus1 SINE Alu 0 148 28 2 887 422 264 153 49 chr3 39700190 39700276 -119899507 - ID_B1 SINE B4 0 224 1 2 887 925 308 20 3 chr3 39700276 39700621 -119899162 - Lx8 LINE L1 -407 7066 6716 2 887 554 127 79 0 chr3 39701825 39701951 -119897832 - L1_Mus3 LINE L1 -2 6636 6501 2 887 17612 210 42 43 chr3 39703944 39709738 -119890045 + Lx5 LINE L1 1018 6868 -592 2 887 337 283 101 97 chr3 39709760 39709987 -119889796 + Lx5 LINE L1 7190 7417 -43 2 887 343 269 67 60 chr3 39710000 39710150 -119889633 + L1M5 LINE L1 5374 5524 -716 2 887 3545 156 21 29 chr3 39710211 39710876 -119888907 + L1_Mm LINE L1 5222 5881 -2 3 887 409 134 0 79 chr3 39710884 39710958 -119888825 + Lx LINE L1 6566 6639 -15 3 887 1075 108 113 11 chr3 39710958 39711135 -119888648 + B2_Mm2 SINE B2 1 195 0 3 887 409 134 0 79 chr3 39711135 39711149 -119888634 + Lx LINE L1 6640 6647 -7 3 887 593 254 5 85 chr3 39711179 39711262 -119888521 + RMER1C Other Other 1138 1217 -125 3 887 1415 39 0 6 chr3 39711262 39711441 -119888342 + (TTTC)n Simple_repeat Simple_repeat 1 178 0 3 887 593 254 5 85 chr3 39711441 39711568 -119888215 + RMER1C Other Other 1218 1331 -11 3 887 204 281 0 17 chr3 39714010 39714068 -119885715 - L2a LINE L2 -9 3417 3361 3 887 1380 271 62 26 chr3 39714222 39714688 -119885095 + Lx6 LINE L1 6974 7456 -4 3 110 545 294 27 27 chr3 39714766 39714913 -119884870 + ID_B1 SINE B4 78 224 0 3 888 723 115 228 13 chr3 39715236 39715394 -119884389 + Lx2 LINE L1 6805 6996 -1 3 888 210 192 19 0 chr3 39715394 39715446 -119884337 + A-rich Low_complexity Low_complexity 1 53 0 3 888 252 273 0 0 chr3 39716095 39716205 -119883578 + (TA)n Simple_repeat Simple_repeat 2 111 0 3 888 21 0 0 0 chr3 39716214 39716235 -119883548 + AT_rich Low_complexity Low_complexity 1 21 0 3 888 215 215 21 91 chr3 39716296 39716439 -119883344 + (TATAA)n Simple_repeat Simple_repeat 4 136 0 3 888 325 19 57 19 chr3 39718180 39718233 -119881550 + (CAAAA)n Simple_repeat Simple_repeat 2 56 0 3 888 227 264 11 54 chr3 39718310 39718402 -119881381 + GA-rich Low_complexity Low_complexity 3 90 0 3 888 315 0 0 0 chr3 39718555 39718590 -119881193 + (TC)n Simple_repeat Simple_repeat 2 36 0 3 888 480 18 0 0 chr3 39718590 39718646 -119881137 + (TG)n Simple_repeat Simple_repeat 2 58 0 3 888 258 32 0 0 chr3 39719665 39719696 -119880087 + (CTG)n Simple_repeat Simple_repeat 2 32 0 3 888 939 207 43 24 chr3 39720396 39720604 -119879179 - B3 SINE B2 -4 212 1 3 888 33884 78 4 5 chr3 39720664 39726014 -119873769 + L1Md_F LINE L1 281 5586 -297 3 888 8687 45 0 6 chr3 39726014 39727015 -119872768 + L1Md_F2 LINE L1 5587 6581 -1 3 888 33884 69 2 1 chr3 39727015 39727031 -119872752 + L1Md_F LINE L1 5587 5602 -281 3 888 2936 156 25 67 chr3 39727036 39727587 -119872196 - RLTR11A LTR ERVK 0 528 1 3 888 243 246 42 42 chr3 39728053 39728125 -119871658 + ID4 SINE ID 3 74 -9 3 888 1854 50 27 0 chr3 39729221 39729441 -119870342 + L1Md_A LINE L1 6356 6581 -1 3 888 1056 233 97 50 chr3 39729594 39729956 -119869827 + MTEa LTR MaLR 1 379 0 3 888 342 0 0 0 chr3 39730777 39730815 -119868968 + (TTA)n Simple_repeat Simple_repeat 2 39 0 3 888 985 41 0 16 chr3 39730818 39730943 -119868840 - L1Md_F2 LINE L1 -19 6563 6441 3 888 3384 61 7 7 chr3 39730943 39731375 -119868408 + L1Md_F2 LINE L1 5989 6420 -162 3 888 538 265 20 89 chr3 39732108 39732311 -119867472 + B3A SINE B2 2 190 -8 3 888 4838 49 0 0 chr3 39732600 39733152 -119866631 - L1Md_F2 LINE L1 -12 6570 6019 3 888 255 61 0 0 chr3 39734800 39734833 -119864950 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 3 888 255 389 40 0 chr3 39734838 39734964 -119864819 - ID_B1 SINE B4 0 224 94 3 888 423 0 0 0 chr3 39735781 39735828 -119863955 + (TG)n Simple_repeat Simple_repeat 2 48 0 3 888 290 278 105 53 chr3 39736335 39736525 -119863258 - L1M5 LINE L1 -379 5783 5584 3 888 236 314 155 65 chr3 39736744 39737098 -119862685 - BLACKJACK DNA AcHobo -1485 1459 1074 3 888 684 306 68 68 chr3 39737157 39737539 -119862244 - BLACKJACK DNA AcHobo -2070 874 493 3 888 417 284 198 32 chr3 39738291 39738538 -119861245 - B4 SINE B4 -3 289 2 3 888 771 84 0 9 chr3 39740550 39740658 -119859125 + LTRIS2 LTR ERV1 379 485 -79 3 888 1066 227 24 0 chr3 39741092 39741299 -119858484 - B3 SINE B2 0 216 5 3 888 268 187 27 27 chr3 39741658 39741768 -119858015 + GA-rich Low_complexity Low_complexity 1 110 0 3 888 1344 166 18 9 chr3 39741925 39742150 -119857633 + Lx5 LINE L1 6627 6853 -197 3 888 4544 80 14 7 chr3 39742159 39742738 -119857045 - L1Md_F2 LINE L1 -15 6567 5985 3 888 3798 45 20 12 chr3 39742738 39743230 -119856553 - LTRIS2 LTR ERV1 0 564 69 3 888 552 29 0 0 chr3 39743245 39743315 -119856468 - L1_Mus2 LINE L1 -586 5980 5911 3 888 711 180 133 24 chr3 39743320 39743485 -119856298 + Lx5 LINE L1 6864 7046 -4 3 888 627 209 87 29 chr3 39743890 39744028 -119855755 - B1_Mur2 SINE Alu -2 147 2 3 888 238 282 108 40 chr3 39744138 39744212 -119855571 - B3A SINE B2 -60 138 60 3 888 267 31 0 0 chr3 39744615 39744647 -119855136 + (TAA)n Simple_repeat Simple_repeat 1 32 0 3 888 798 253 76 41 chr3 39744916 39745233 -119854550 + RLTR15 LTR ERVK 1 328 -31 3 888 293 280 40 13 chr3 39745404 39745480 -119854303 - MLT1D LTR MaLR -125 380 303 3 888 1038 76 0 0 chr3 39745797 39745929 -119853854 + L1_Mus1 LINE L1 6436 6567 0 3 888 555 301 118 88 chr3 39745983 39746383 -119853400 + RMER13A LTR ERVK 55 466 -394 3 888 1324 127 35 26 chr3 39747436 39747662 -119852121 + Lx2 LINE L1 6768 6995 -2 3 888 317 291 11 23 chr3 39748667 39748755 -119851028 + Lx8 LINE L1 7142 7228 -245 3 888 289 298 144 20 chr3 39748741 39748943 -119850840 + Lx9 LINE L1 7368 7594 -50 3 888 268 316 111 42 chr3 39749541 39749848 -119849935 - Lx9 LINE L1 -47 7597 7270 3 888 268 358 111 16 chr3 39750716 39750906 -119848877 + L2a LINE L2 2941 3148 -278 3 888 243 0 0 0 chr3 39752124 39752151 -119847632 + (TC)n Simple_repeat Simple_repeat 2 28 0 3 888 459 0 0 0 chr3 39752151 39752201 -119847582 + (TG)n Simple_repeat Simple_repeat 2 52 0 3 888 739 242 140 0 chr3 39752370 39752396 -119847387 - B3 SINE B2 -4 212 187 3 888 318 26 0 0 chr3 39752396 39752435 -119847348 + (TG)n Simple_repeat Simple_repeat 2 40 0 3 888 739 242 140 0 chr3 39752435 39752594 -119847189 - B3 SINE B2 -30 186 3 3 888 2117 117 30 15 chr3 39753722 39754053 -119845730 - Lx2 LINE L1 -1 6996 6661 3 888 206 167 90 8 chr3 39754367 39754437 -119845346 - MIRc SINE MIR -4 204 125 3 888 316 346 73 49 chr3 39754671 39754800 -119844983 + MLT-int LTR MaLR 1484 1622 -113 3 888 2954 63 0 37 chr3 39754800 39755181 -119844602 - L1Md_F2 LINE L1 -6 6576 6210 3 888 316 346 73 49 chr3 39755181 39755297 -119844486 + MLT-int LTR MaLR 1623 1734 -1 3 888 250 302 45 34 chr3 39755528 39755617 -119844166 + MLT1A0 LTR MaLR 268 357 -8 3 888 24 0 0 0 chr3 39755880 39755904 -119843879 + AT_rich Low_complexity Low_complexity 1 24 0 3 888 36170 48 1 3 chr3 39756647 39761990 -119837793 + L1Md_T LINE L1 162 5589 -297 3 888 9060 31 0 0 chr3 39761990 39762986 -119836797 + L1Md_T LINE L1 5590 6585 0 3 888 200 170 0 19 chr3 39763500 39763554 -119836229 + (TG)n Simple_repeat Simple_repeat 1 53 0 3 888 797 254 5 32 chr3 39763554 39763741 -119836042 - B3A SINE B2 -16 182 1 3 888 276 283 175 9 chr3 39764381 39764495 -119835288 + PB1D10 SINE Alu 1 133 -16 3 888 5642 118 68 30 chr3 39764678 39766085 -119833698 - RLTR1B-int LTR ERV1 -1409 1890 1159 3 888 21 0 0 0 chr3 39766185 39766206 -119833577 + AT_rich Low_complexity Low_complexity 1 21 0 3 888 21813 65 2 14 chr3 39766206 39769628 -119830155 + L1Md_F3 LINE L1 585 3957 -1926 3 888 4873 57 0 0 chr3 39769623 39770219 -119829564 + L1Md_F3 LINE L1 4991 5586 -297 3 888 8702 27 18 0 chr3 39770219 39771185 -119828598 + L1Md_F3 LINE L1 5587 6569 -15 3 888 409 266 31 21 chr3 39771767 39771863 -119827920 + PB1D10 SINE Alu 5 101 -16 3 888 738 60 0 0 chr3 39771979 39772079 -119827704 + (TG)n Simple_repeat Simple_repeat 2 101 0 3 888 260 351 31 8 chr3 39772108 39772237 -119827546 + L1MC4 LINE L1 6694 6825 -1217 3 888 262 259 16 107 chr3 39772635 39772756 -119827027 + PB1D7 SINE Alu 3 112 -8 3 888 180 0 0 0 chr3 39774319 39774339 -119825444 + (ATTTG)n Simple_repeat Simple_repeat 1 20 0 3 888 25 0 0 0 chr3 39774536 39774561 -119825222 + AT_rich Low_complexity Low_complexity 1 25 0 3 888 3602 28 5 0 chr3 39774704 39775098 -119824685 - MTA_Mm LTR MaLR 0 396 1 3 888 252 0 0 0 chr3 39775499 39775527 -119824256 + (TA)n Simple_repeat Simple_repeat 1 28 0 3 888 194 0 39 0 chr3 39775535 39775561 -119824222 + (CA)n Simple_repeat Simple_repeat 2 28 0 3 888 3123 48 0 0 chr3 39775665 39776038 -119823745 + L1Md_F2 LINE L1 5916 6288 -294 3 888 4685 12 0 12 chr3 39776038 39776537 -119823246 + MT2_Mm LTR ERVL 1 493 0 3 888 47703 13 0 0 chr3 39776537 39781908 -119817875 + MERVL-int LTR ERVL 1 5371 -114 3 888 397 123 13 40 chr3 39781908 39781984 -119817799 + ORR1A3-int LTR MaLR 567 640 -1323 3 888 322 0 0 0 chr3 39781984 39782022 -119817761 + MERVL-int LTR ERVL 5448 5485 0 3 888 4730 8 0 12 chr3 39782022 39782521 -119817262 + MT2_Mm LTR ERVL 1 493 0 3 888 2452 39 3 24 chr3 39782521 39782682 -119817101 + L1Md_F2 LINE L1 6284 6444 -138 3 888 1981 129 12 56 chr3 39782682 39783019 -119816764 - RLTRETN_Mm LTR ERVK 0 322 1 3 888 2452 39 3 24 chr3 39783019 39783148 -119816635 + L1Md_F2 LINE L1 6445 6568 -14 3 888 385 341 8 0 chr3 39784224 39784350 -119815433 + B1F1 SINE Alu 10 136 -13 3 888 23 33 0 0 chr3 39786626 39786656 -119813127 + AT_rich Low_complexity Low_complexity 1 30 0 3 888 216 0 0 0 chr3 39788942 39788966 -119810817 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 3 888 595 245 62 47 chr3 39788980 39789173 -119810610 + B3A SINE B2 3 198 0 3 888 468 0 0 0 chr3 39789442 39789494 -119810289 + (TG)n Simple_repeat Simple_repeat 2 53 0 3 888 447 259 26 0 chr3 39789495 39789611 -119810172 - B3A SINE B2 -75 123 5 3 888 1335 259 6 52 chr3 39790563 39790925 -119808858 + MTEa LTR MaLR 22 366 -13 3 888 317 345 42 0 chr3 39791487 39791606 -119808177 - RSINE1 SINE B4 -31 134 11 3 888 328 267 45 34 chr3 39793752 39793841 -119805942 - B1F2 SINE Alu 0 149 60 3 888 230 0 33 0 chr3 39793860 39793890 -119805893 + (TTGG)n Simple_repeat Simple_repeat 2 32 0 3 888 270 0 0 0 chr3 39793911 39793941 -119805842 + (CA)n Simple_repeat Simple_repeat 1 30 0 3 888 389 322 97 7 chr3 39793945 39794089 -119805694 - B4A SINE B4 -4 288 132 3 888 290 304 108 68 chr3 39794496 39794644 -119805139 - RSINE1 SINE B4 -1 164 11 3 888 201 74 0 0 chr3 39796329 39796356 -119803427 + (TG)n Simple_repeat Simple_repeat 2 28 0 3 888 635 309 25 10 chr3 39796455 39796651 -119803132 + B4 SINE B4 83 281 -11 3 888 405 0 0 0 chr3 39796661 39796706 -119803077 + (CA)n Simple_repeat Simple_repeat 1 45 0 3 888 292 264 28 0 chr3 39797366 39797438 -119802345 - MLT1E2 LTR MaLR -546 81 8 4 888 484 321 122 28 chr3 39799525 39799852 -119799931 + LTR52 LTR ERVL 5 362 -59 4 888 1250 251 74 33 chr3 39799905 39800271 -119799512 + MTD LTR MaLR 10 390 -29 4 888 1221 247 72 63 chr3 39800274 39800688 -119799095 - Lx5 LINE L1 -3 7047 6630 4 888 287 272 0 42 chr3 39802812 39802908 -119796875 + CT-rich Low_complexity Low_complexity 3 94 0 4 888 269 261 161 11 chr3 39805280 39805373 -119794410 - MLT2B4 LTR ERVL -63 493 387 4 888 289 312 26 9 chr3 39805759 39805872 -119793911 + PB1D10 SINE Alu 3 117 0 4 888 6221 143 29 4 chr3 39806129 39807064 -119792719 - RMER17B LTR ERVK 0 958 1 4 888 321 188 0 0 chr3 39807879 39807943 -119791840 + Lx2B LINE L1 6932 6995 -5 4 888 39 60 0 0 chr3 39808237 39808304 -119791479 + AT_rich Low_complexity Low_complexity 1 67 0 4 888 2156 114 98 28 chr3 39809860 39810248 -119789535 - RLTR9F LTR ERVK 0 415 1 4 888 23 54 0 0 chr3 39810798 39810835 -119788948 + AT_rich Low_complexity Low_complexity 1 37 0 4 888 330 311 19 10 chr3 39811026 39811130 -119788653 - PB1D10 SINE Alu -7 110 6 4 888 236 287 138 62 chr3 39811640 39811785 -119787998 + LTR16C LTR ERVL 135 290 -199 4 888 343 272 0 13 chr3 39812250 39812399 -119787384 + CT-rich Low_complexity Low_complexity 2 148 0 4 888 21 0 0 0 chr3 39812899 39812920 -119786863 + AT_rich Low_complexity Low_complexity 1 21 0 4 888 1017 275 0 0 chr3 39813132 39813343 -119786440 + B3 SINE B2 1 211 -5 4 888 24 77 0 0 chr3 39814093 39814145 -119785638 + AT_rich Low_complexity Low_complexity 1 52 0 4 888 6673 122 86 10 chr3 39814637 39816000 -119783783 + Lx LINE L1 5156 6654 0 4 888 604 249 95 60 chr3 39816082 39816371 -119783412 + L1M2 LINE L1 4473 4762 -1378 4 888 378 284 34 7 chr3 39816364 39816513 -119783270 + L1_Rod LINE L1 4814 4966 -881 4 888 296 301 124 13 chr3 39816519 39816657 -119783126 + RSINE1 SINE B4 4 160 -5 4 888 288 0 0 0 chr3 39816681 39816713 -119783070 + (CA)n Simple_repeat Simple_repeat 1 32 0 4 888 450 0 0 0 chr3 39816713 39816762 -119783021 + (GA)n Simple_repeat Simple_repeat 2 51 0 4 888 573 88 0 0 chr3 39818840 39818920 -119780863 + (CGTG)n Simple_repeat Simple_repeat 2 81 0 4 888 1128 51 11 22 chr3 39818924 39819105 -119780678 + (TG)n Simple_repeat Simple_repeat 2 180 0 4 888 325 253 29 55 chr3 39820701 39820842 -119778941 - PB1 SINE Alu -11 138 8 4 888 3900 120 62 18 chr3 39820949 39821656 -119778127 - RMER17A LTR ERVK -13 738 1 4 888 22 0 0 0 chr3 39821659 39821681 -119778102 + AT_rich Low_complexity Low_complexity 1 22 0 4 888 288 0 0 0 chr3 39821715 39821747 -119778036 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 4 888 930 104 96 0 chr3 39821766 39821891 -119777892 - B1_Mus2 SINE Alu -9 138 2 4 888 663 252 111 5 chr3 39821961 39822168 -119777615 + B4A SINE B4 50 278 -14 4 888 342 159 0 0 chr3 39822356 39822444 -119777339 + GA-rich Low_complexity Low_complexity 1 88 0 4 888 371 364 13 0 chr3 39823700 39823851 -119775932 + GA-rich Low_complexity Low_complexity 1 153 0 4 888 279 0 0 0 chr3 39825213 39825244 -119774539 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 4 888 390 91 0 0 chr3 39825409 39825464 -119774319 + (CAAAT)n Simple_repeat Simple_repeat 2 56 0 4 888 4039 228 23 103 chr3 39825594 39827090 -119772693 + RMER1A Other Other 7 1030 0 4 888 271 233 68 0 chr3 39827393 39827466 -119772317 + ID4 SINE ID 4 81 -2 4 888 3943 174 63 1 chr3 39827578 39828230 -119771553 - RLTR17 LTR ERVK 0 692 1 4 888 3241 203 25 34 chr3 39828257 39829016 -119770767 - RMER3D-int LTR ERVK -30 2812 2061 4 888 837 231 58 9 chr3 39829034 39829257 -119770526 - LTRIS4 LTR ERV1 0 507 274 4 888 2764 226 65 63 chr3 39829549 39830604 -119769179 - RMER3D-int LTR ERVK -788 2054 997 4 888 183 339 51 62 chr3 39830760 39830936 -119768847 + L2b LINE L2 3010 3183 -192 4 888 396 0 0 0 chr3 39831830 39831874 -119767909 + (CA)n Simple_repeat Simple_repeat 2 45 0 4 888 536 226 153 49 chr3 39832485 39832629 -119767154 + B3 SINE B2 5 163 -53 4 888 324 0 0 0 chr3 39832631 39832667 -119767116 + (TG)n Simple_repeat Simple_repeat 2 37 0 4 888 1294 144 45 9 chr3 39832695 39832919 -119766864 + RLTR15 LTR ERVK 1 232 -127 4 888 1227 108 6 0 chr3 39832919 39833086 -119766697 - L1_Mus4 LINE L1 -316 6320 6153 4 888 1280 117 54 0 chr3 39833085 39833290 -119766493 + L1_Mus4 LINE L1 6328 6543 -93 4 888 1951 177 28 18 chr3 39833290 39833682 -119766101 + RLTR16 LTR ERVK 110 505 0 4 888 390 303 155 40 chr3 39833682 39833978 -119765805 + L1M4 LINE L1 646 975 -5567 4 888 619 304 58 22 chr3 39834275 39834870 -119764913 + L1M4 LINE L1 2538 3156 -3488 4 888 2375 132 17 27 chr3 39834969 39835382 -119764401 - RLTR9E LTR ERVK 0 409 1 4 888 245 303 47 38 chr3 39835428 39835586 -119764197 - B3A SINE B2 -13 203 1 4 888 306 73 0 0 chr3 39835820 39835861 -119763922 + (CA)n Simple_repeat Simple_repeat 1 41 0 4 888 2015 95 25 19 chr3 39836133 39836455 -119763328 - ORR1A4 LTR MaLR 0 329 6 4 888 912 241 57 33 chr3 39837629 39837655 -119762128 + B3 SINE B2 1 25 -191 4 888 867 220 270 109 chr3 39837655 39838114 -119761669 - MT2A LTR ERVL 0 533 1 4 888 912 241 57 33 chr3 39838114 39838297 -119761486 + B3 SINE B2 26 215 -1 4 888 867 20 0 0 chr3 39839133 39839234 -119760549 + (GAA)n Simple_repeat Simple_repeat 2 102 0 4 888 435 100 0 0 chr3 39839363 39839433 -119760350 + (TCCC)n Simple_repeat Simple_repeat 3 72 0 4 888 394 295 126 0 chr3 39839981 39840171 -119759612 - L1M3 LINE L1 -511 5801 5588 4 888 1199 54 7 0 chr3 39840447 39840594 -119759189 + B1_Mus1 SINE Alu 1 148 0 4 888 567 71 0 0 chr3 39840596 39840681 -119759102 + (CAAAA)n Simple_repeat Simple_repeat 1 85 0 4 888 489 319 70 26 chr3 39840712 39841128 -119758655 - L1M3 LINE L1 -867 5273 4840 4 888 543 200 97 32 chr3 39841577 39841732 -119758051 - MT2A LTR ERVL 0 533 369 4 888 311 356 74 14 chr3 39842913 39843061 -119756722 + HAL1-3A_ME LINE L1 2284 2440 -418 4 888 750 23 0 0 chr3 39845392 39845480 -119754303 + (GAGAA)n Simple_repeat Simple_repeat 4 91 0 4 889 6820 107 20 1 chr3 39847004 39848208 -119751575 - L1_Mus4 LINE L1 0 6636 5407 4 889 4328 164 12 111 chr3 39848206 39849330 -119750453 + L1_Mur2 LINE L1 4382 5393 -484 4 889 201 256 0 0 chr3 39849830 39849873 -119749910 + GA-rich Low_complexity Low_complexity 3 45 0 4 889 235 267 0 0 chr3 39850080 39850125 -119749658 + RSINE1 SINE B4 18 62 -103 4 889 187 54 54 0 chr3 39850170 39850207 -119749576 + (CAAAAA)n Simple_repeat Simple_repeat 4 42 0 4 889 666 174 0 0 chr3 39852363 39852501 -119747282 + CT-rich Low_complexity Low_complexity 1 138 0 4 889 198 0 0 0 chr3 39852501 39852523 -119747260 + (TG)n Simple_repeat Simple_repeat 1 22 0 4 889 671 275 0 26 chr3 39852865 39853018 -119746765 - B4 SINE B4 -139 153 5 4 889 342 343 44 25 chr3 39854038 39854241 -119745542 + L1MC LINE L1 5587 5793 -540 4 889 1947 220 8 176 chr3 39854442 39855176 -119744607 + RMER19C LTR ERVK 1 611 0 4 889 1066 197 38 0 chr3 39855176 39855389 -119744394 + MurERV4_19-int LTR ERVK 1 221 -5559 4 889 5163 37 0 0 chr3 39855418 39856060 -119743723 - L1Md_A LINE L1 -34 6548 5907 4 889 3283 158 11 31 chr3 39856060 39856864 -119742919 + MurERV4_19-int LTR ERVK 658 1554 -4226 4 889 809 212 113 22 chr3 39856932 39857207 -119742576 + L1Md_F LINE L1 328 627 -5892 4 889 6139 134 32 13 chr3 39857207 39858276 -119741507 + MurERV4_19-int LTR ERVK 1643 2731 -3049 4 889 216 51 7 126 chr3 39858279 39858414 -119741369 + A-rich Low_complexity Low_complexity 2 120 0 4 889 1366 150 29 0 chr3 39858416 39858656 -119741127 + MurERV4_19-int LTR ERVK 2713 2959 -2821 4 889 574 198 24 47 chr3 39858656 39858783 -119741000 + RMER19B LTR ERVK 776 899 -3 4 889 287 309 48 18 chr3 39859231 39859396 -119740387 - Lx8 LINE L1 -265 7208 7039 4 889 222 91 0 0 chr3 39859453 39859486 -119740297 + (TTG)n Simple_repeat Simple_repeat 2 34 0 4 889 432 0 0 0 chr3 39859570 39859618 -119740165 + (TG)n Simple_repeat Simple_repeat 1 48 0 4 889 467 316 0 0 chr3 39859651 39859768 -119740015 - B3A SINE B2 -81 117 1 4 889 276 364 23 1 chr3 39860221 39860391 -119739392 - MIRm SINE MIR -1 267 85 4 889 373 340 13 34 chr3 39860926 39861075 -119738708 + ID_B1 SINE B4 1 146 -78 4 889 312 226 0 0 chr3 39861872 39861934 -119737849 - ID2 SINE ID -17 66 5 4 889 33 43 0 0 chr3 39862655 39862702 -119737081 + AT_rich Low_complexity Low_complexity 1 47 0 4 889 470 274 16 31 chr3 39862702 39862830 -119736953 - RSINE1 SINE B4 -36 129 4 4 889 26 0 0 0 chr3 39862832 39862858 -119736925 + AT_rich Low_complexity Low_complexity 1 26 0 4 889 233 209 15 0 chr3 39863507 39863574 -119736209 + GA-rich Low_complexity Low_complexity 2 69 0 4 889 3408 280 57 16 chr3 39863797 39864905 -119734878 + Lx8 LINE L1 6318 7470 -3 4 889 469 319 156 57 chr3 39865314 39865680 -119734103 + L1MCc LINE L1 110 511 -5912 4 889 207 286 91 45 chr3 39865784 39865894 -119733889 - L3 LINE CR1 -3330 1159 1045 4 889 686 161 17 6 chr3 39865905 39866080 -119733703 + (TA)n Simple_repeat Simple_repeat 2 178 0 4 889 306 279 127 50 chr3 39866314 39866574 -119733209 - B4A SINE B4 -10 282 3 4 889 243 169 50 17 chr3 39867667 39867727 -119732056 - MTD LTR MaLR 0 419 358 4 889 1038 176 113 4 chr3 39867734 39867963 -119731820 - Lx LINE L1 -7 6647 6394 4 889 17496 153 6 85 chr3 39867962 39868284 -119731499 - L1VL2 LINE L1 -921 4962 4650 4 889 1068 70 20 34 chr3 39868284 39868432 -119731351 + B1_Mm SINE Alu 2 147 0 4 889 17496 153 6 85 chr3 39868432 39870766 -119729017 - L1VL2 LINE L1 -1234 4649 2622 4 889 392 118 474 0 chr3 39870766 39870842 -119728941 - PB1D9 SINE Alu -7 113 2 4 889 17496 151 18 52 chr3 39870842 39873070 -119726713 - L1VL2 LINE L1 -3262 2621 371 4 889 1043 261 71 45 chr3 39873071 39873424 -119726359 - MTD LTR MaLR -57 362 1 4 889 305 279 93 0 chr3 39873425 39873565 -119726218 + L1MC5 LINE L1 7634 7786 -175 4 889 25 51 0 0 chr3 39873618 39873657 -119726126 + AT_rich Low_complexity Low_complexity 1 39 0 4 889 223 28 27 27 chr3 39874042 39874079 -119725704 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 4 889 364 19 19 19 chr3 39874079 39874133 -119725650 + (GTTTG)n Simple_repeat Simple_repeat 2 55 0 5 889 1195 245 14 112 chr3 39874359 39874576 -119725207 + RMER17C LTR ERVK 1 192 -218 5 889 519 17 0 0 chr3 39874576 39874636 -119725147 + (TC)n Simple_repeat Simple_repeat 2 61 0 5 889 1195 245 14 112 chr3 39874636 39874837 -119724946 + RMER17C LTR ERVK 193 378 -32 5 889 1337 209 50 83 chr3 39874991 39875384 -119724399 + RMER17C-int LTR ERVK 225 601 -2637 5 889 282 56 0 0 chr3 39875384 39875420 -119724363 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 5 889 1337 209 50 83 chr3 39875420 39875448 -119724335 + RMER17C-int LTR ERVK 602 631 -2607 5 889 3645 164 15 56 chr3 39875980 39876731 -119723052 + RMER17C-int LTR ERVK 1096 1815 -1423 5 889 305 267 88 11 chr3 39877450 39877541 -119722242 - RMER10A LTR ERVL -27 415 318 5 889 399 212 5 0 chr3 39877654 39877837 -119721946 + GA-rich Low_complexity Low_complexity 1 183 0 5 889 612 300 32 40 chr3 39878744 39878997 -119720786 - RMER15 LTR ERVL -13 562 312 5 889 915 295 65 30 chr3 39879051 39879404 -119720379 - RLTR28B LTR ERVL -138 343 3 5 889 1795 160 205 19 chr3 39879638 39880014 -119719769 - RLTR41 LTR ERV1 0 446 1 5 889 26 0 0 0 chr3 39880216 39880242 -119719541 + AT_rich Low_complexity Low_complexity 1 26 0 5 889 1072 253 32 100 chr3 39880242 39880327 -119719456 + RMER17C LTR ERVK 1 85 -325 5 889 315 0 0 0 chr3 39880327 39880362 -119719421 + (TC)n Simple_repeat Simple_repeat 1 35 0 5 889 1072 253 32 100 chr3 39880362 39880685 -119719098 + RMER17C LTR ERVK 86 381 -29 5 889 274 377 6 25 chr3 39881037 39881200 -119718583 + GA-rich Low_complexity Low_complexity 4 163 0 5 889 303 350 80 53 chr3 39881200 39881351 -119718432 + HAL1-3A_ME LINE L1 2284 2438 -420 5 889 254 148 0 18 chr3 39881400 39881455 -119718328 + GA-rich Low_complexity Low_complexity 4 57 0 5 889 943 274 45 49 chr3 39882340 39882628 -119717155 + B4A SINE B4 2 288 -4 5 889 200 94 31 0 chr3 39882938 39882970 -119716813 + (GAAA)n Simple_repeat Simple_repeat 2 34 0 5 889 398 114 14 0 chr3 39883110 39883180 -119716603 + (TC)n Simple_repeat Simple_repeat 1 71 0 5 889 341 131 16 0 chr3 39883179 39883240 -119716543 + (CA)n Simple_repeat Simple_repeat 1 62 0 5 889 877 275 10 0 chr3 39884967 39885174 -119714609 - B3 SINE B2 -6 210 2 5 889 338 332 147 8 chr3 39885862 39886100 -119713683 + B4A SINE B4 4 274 -18 5 889 1366 157 48 28 chr3 39886119 39886531 -119713252 - RMER17C LTR ERVK -519 439 16 5 889 623 271 47 0 chr3 39886790 39886960 -119712823 + B3A SINE B2 3 180 -18 5 889 269 242 0 0 chr3 39886989 39887055 -119712728 + (CA)n Simple_repeat Simple_repeat 1 66 0 5 889 386 236 0 6 chr3 39887067 39887233 -119712550 + (CA)n Simple_repeat Simple_repeat 2 166 0 5 889 29 28 0 0 chr3 39889193 39889229 -119710554 + AT_rich Low_complexity Low_complexity 1 36 0 5 889 316 113 18 54 chr3 39889569 39889625 -119710158 - HAL1-3A_ME LINE L1 -829 2029 1976 5 889 714 258 31 31 chr3 39890274 39890466 -119709317 + B3A SINE B2 2 193 -5 5 889 262 253 0 39 chr3 39890649 39890727 -119709056 - B4A SINE B4 0 292 218 5 889 1536 248 70 46 chr3 39890750 39891291 -119708492 - RLTR20B3 LTR ERVK 0 577 24 5 889 305 233 135 10 chr3 39891314 39891418 -119708365 - B4A SINE B4 -175 117 1 5 889 253 238 138 0 chr3 39893101 39893181 -119706602 - Lx8 LINE L1 -1068 6405 6315 5 889 588 14 0 0 chr3 39893412 39893481 -119706302 + (GA)n Simple_repeat Simple_repeat 2 70 0 5 889 247 188 0 0 chr3 39894973 39895021 -119704762 - Lx8 LINE L1 -3 7470 7423 5 889 207 278 14 27 chr3 39895086 39895234 -119704549 + (TATG)n Simple_repeat Simple_repeat 1 146 0 5 889 826 159 189 5 chr3 39895383 39895573 -119704210 + URR1B DNA MER1_type 1 225 0 5 889 412 261 254 8 chr3 39895733 39895793 -119703990 + L1M4 LINE L1 2971 3037 -3109 5 889 358 295 28 19 chr3 39895793 39895900 -119703883 + PB1D7 SINE Alu 1 108 -12 5 889 321 26 0 0 chr3 39895900 39895938 -119703845 + (TTAA)n Simple_repeat Simple_repeat 1 38 0 5 889 412 261 254 8 chr3 39895938 39896116 -119703667 + L1M4 LINE L1 3038 3268 -2878 5 889 366 23 0 0 chr3 39896118 39896161 -119703622 + (CA)n Simple_repeat Simple_repeat 1 43 0 5 889 501 124 0 0 chr3 39898050 39898147 -119701636 + (GGGA)n Simple_repeat Simple_repeat 2 98 0 5 889 204 67 0 0 chr3 39898655 39898685 -119701098 + (A)n Simple_repeat Simple_repeat 1 30 0 5 889 26 50 0 0 chr3 39898694 39898734 -119701049 + AT_rich Low_complexity Low_complexity 1 40 0 5 889 570 256 0 0 chr3 39899163 39899280 -119700503 + PB1D10 SINE Alu 1 117 0 5 889 1440 217 80 104 chr3 39900840 39901242 -119698541 + RMER15 LTR ERVL 1 392 -183 5 889 392 138 0 0 chr3 39901928 39901986 -119697797 + PB1 SINE Alu 1 58 -69 5 889 307 280 55 83 chr3 39901986 39902037 -119697746 + ID_B1 SINE B4 82 187 -37 5 889 307 400 0 0 chr3 39902048 39902138 -119697645 - B1F SINE Alu -58 91 2 5 889 1565 188 176 0 chr3 39902156 39902491 -119697292 - ORR1B1 LTR MaLR 0 394 1 5 889 2119 165 31 5 chr3 39903141 39903525 -119696258 - ORR1B1 LTR MaLR 0 394 1 5 889 233 328 82 53 chr3 39903732 39904051 -119695732 + ORR1E LTR MaLR 32 359 0 5 889 462 273 14 121 chr3 39904808 39905023 -119694760 - RMER21A LTR ERV1 -369 578 268 5 889 284 231 15 0 chr3 39904991 39905056 -119694727 - RMER21A LTR ERV1 -482 465 400 5 889 369 0 0 0 chr3 39905378 39905419 -119694364 + (TG)n Simple_repeat Simple_repeat 2 42 0 5 889 1609 221 62 10 chr3 39906222 39906607 -119693176 - MTD LTR MaLR -2 417 13 5 889 471 35 0 0 chr3 39907307 39907364 -119692419 + (CA)n Simple_repeat Simple_repeat 2 58 0 5 889 414 107 16 78 chr3 39907622 39907814 -119691969 + (TA)n Simple_repeat Simple_repeat 1 180 0 5 889 261 0 0 0 chr3 39907814 39907843 -119691940 + (TG)n Simple_repeat Simple_repeat 2 30 0 5 889 250 235 35 0 chr3 39907916 39908001 -119691782 + T-rich Low_complexity Low_complexity 3 90 0 5 889 271 391 8 17 chr3 39908114 39908231 -119691552 - PB1D10 SINE Alu -1 116 1 5 889 231 36 0 0 chr3 39909732 39909760 -119690023 + (TTTTTG)n Simple_repeat Simple_repeat 3 30 0 5 889 1458 198 86 33 chr3 39910341 39910377 -119689406 - RLTR14 LTR ERV1 -2 380 329 5 889 378 94 0 0 chr3 39910377 39910441 -119689342 + (TTAGGG)n Simple_repeat Simple_repeat 3 66 0 5 889 1458 198 86 33 chr3 39910441 39910765 -119689018 - RLTR14 LTR ERV1 -54 328 1 5 889 684 347 6 0 chr3 39912206 39912382 -119687401 + B3A SINE B2 7 183 -15 5 889 24 32 0 0 chr3 39912414 39912445 -119687338 + AT_rich Low_complexity Low_complexity 1 31 0 5 889 481 342 53 64 chr3 39912468 39912827 -119686956 - ORR1E LTR MaLR -4 355 1 5 889 501 307 196 13 chr3 39913891 39914208 -119685575 + MTEa LTR MaLR 5 379 0 5 889 1179 263 170 25 chr3 39914310 39915277 -119684506 + L1MC LINE L1 2330 3447 -2699 5 889 508 285 70 78 chr3 39915278 39915573 -119684210 + L1M2 LINE L1 4848 5140 -1003 5 889 543 252 102 0 chr3 39915573 39915700 -119684083 - B1_Mur2 SINE Alu -8 141 2 5 889 508 290 118 31 chr3 39915700 39916226 -119683557 + L1M2 LINE L1 5141 5709 -582 5 889 326 235 63 81 chr3 39916282 39916393 -119683390 + PB1D10 SINE Alu 7 115 -2 5 889 7139 118 26 55 chr3 39916448 39917883 -119681900 + L1_Mus3 LINE L1 5587 6997 0 5 889 502 292 103 58 chr3 39917953 39918313 -119681470 + MTEa LTR MaLR 4 379 0 5 889 1537 210 64 22 chr3 39918495 39918855 -119680928 + MTD LTR MaLR 1 375 -44 5 889 342 268 23 11 chr3 39919053 39919140 -119680643 + B3 SINE B2 4 91 -125 5 889 555 239 0 6 chr3 39919178 39919528 -119680255 + (CA)n Simple_repeat Simple_repeat 1 347 0 5 889 524 285 0 6 chr3 39919547 39919727 -119680056 + (CA)n Simple_repeat Simple_repeat 2 180 0 5 889 361 200 63 21 chr3 39919732 39919875 -119679908 - RLTR21 LTR ERVK -264 1308 1160 5 889 195 139 0 0 chr3 39921549 39921585 -119678198 + (A)n Simple_repeat Simple_repeat 1 36 0 5 889 984 281 38 12 chr3 39921896 39922242 -119677541 + Lx8 LINE L1 6598 6952 -521 5 889 417 141 0 0 chr3 39922247 39922318 -119677465 + (TG)n Simple_repeat Simple_repeat 2 72 0 5 889 366 22 0 0 chr3 39922363 39922403 -119677380 + (CA)n Simple_repeat Simple_repeat 2 41 0 5 889 567 43 0 0 chr3 39922403 39922473 -119677310 + (TA)n Simple_repeat Simple_repeat 2 71 0 5 889 1335 278 79 6 chr3 39922483 39922954 -119676829 + Lx8 LINE L1 6964 7468 -5 5 889 879 101 6 12 chr3 39924162 39924323 -119675460 + (GA)n Simple_repeat Simple_repeat 1 160 0 5 889 319 356 33 26 chr3 39925032 39925185 -119674598 + HAL1-3A_ME LINE L1 2284 2437 -421 5 889 290 288 112 61 chr3 39926789 39926985 -119672798 + ID_B1 SINE B4 1 206 -18 5 889 492 213 57 0 chr3 39927188 39927310 -119672473 + MLT1C LTR MaLR 8 136 -331 5 889 224 213 43 0 chr3 39927569 39927616 -119672167 + (TATG)n Simple_repeat Simple_repeat 2 50 0 5 889 2698 300 30 22 chr3 39927645 39928651 -119671132 + Lx9 LINE L1 6357 7370 -274 5 889 537 356 176 41 chr3 39929010 39929522 -119670261 - Tigger7 DNA MER2_type -1899 592 12 5 889 332 270 82 64 chr3 39930126 39930382 -119669401 + ORR1E LTR MaLR 96 371 -8 5 889 333 68 0 0 chr3 39930495 39930539 -119669244 + (TAA)n Simple_repeat Simple_repeat 1 44 0 5 889 1219 160 27 5 chr3 39933444 39933664 -119666119 - URR1B DNA MER1_type 0 225 1 5 889 1423 236 25 3 chr3 39933719 39934033 -119665750 - RMER15 LTR ERVL 0 575 255 5 889 210 115 58 0 chr3 39934444 39934496 -119665287 + (TA)n Simple_repeat Simple_repeat 2 56 0 5 889 508 134 21 0 chr3 39934505 39934602 -119665181 + GA-rich Low_complexity Low_complexity 2 100 0 5 889 25 99 0 0 chr3 39935520 39935601 -119664182 + AT_rich Low_complexity Low_complexity 1 81 0 5 889 322 351 0 0 chr3 39935725 39935819 -119663964 + PB1 SINE Alu 12 105 -22 5 889 234 105 0 0 chr3 39935832 39935870 -119663913 + (CAA)n Simple_repeat Simple_repeat 2 39 0 5 889 659 181 43 0 chr3 39936493 39936609 -119663174 + B1_Mur2 SINE Alu 1 121 -28 5 889 636 14 0 0 chr3 39936609 39936682 -119663101 + (GA)n Simple_repeat Simple_repeat 2 74 0 5 889 333 0 0 0 chr3 39936713 39936750 -119663033 + (TG)n Simple_repeat Simple_repeat 2 38 0 5 889 273 267 62 12 chr3 39936751 39936853 -119662930 - B3 SINE B2 -17 181 72 5 889 225 24 71 0 chr3 39936871 39936913 -119662870 + (TTTTG)n Simple_repeat Simple_repeat 2 46 0 5 889 611 144 0 0 chr3 39936983 39937087 -119662696 - L1_Mur2 LINE L1 -616 5261 5158 6 889 2925 40 0 0 chr3 39937175 39937527 -119662256 + L1Md_T LINE L1 6231 6582 0 6 889 207 0 0 0 chr3 39938216 39938239 -119661544 + (A)n Simple_repeat Simple_repeat 1 23 0 6 889 7118 117 15 1 chr3 39938239 39939631 -119660152 + Lx LINE L1 5243 6649 -5 6 889 3691 97 8 9 chr3 39939935 39940466 -119659317 - L1Md_F2 LINE L1 -2 6580 6051 6 889 2193 52 3 0 chr3 39940466 39940754 -119659029 + L1Md_F2 LINE L1 5745 6033 -549 6 889 453 278 42 56 chr3 39940928 39941162 -119658621 + MLT1A LTR MaLR 57 374 0 6 889 623 295 29 0 chr3 39942156 39942366 -119657417 + B3 SINE B2 1 216 0 6 889 291 203 0 0 chr3 39943858 39943927 -119655856 + (CA)n Simple_repeat Simple_repeat 2 70 0 6 889 22 0 0 0 chr3 39944063 39944085 -119655698 + AT_rich Low_complexity Low_complexity 1 22 0 6 889 325 278 71 19 chr3 39944317 39944471 -119655312 + Charlie21a DNA MER1_type 852 1013 -200 6 889 242 268 81 92 chr3 39944738 39944923 -119654860 - MamRep137 DNA TcMar? -90 354 172 6 889 180 0 0 0 chr3 39944933 39944953 -119654830 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 6 889 1080 254 55 11 chr3 39945478 39945749 -119654034 + RMER19B LTR ERVK 348 630 -272 6 889 478 259 39 9 chr3 39946246 39946405 -119653378 + MLT1J2 LTR MaLR 32 197 -247 6 889 591 15 0 0 chr3 39947048 39947116 -119652667 + (TC)n Simple_repeat Simple_repeat 2 69 0 6 889 576 29 0 0 chr3 39947116 39947185 -119652598 + (TG)n Simple_repeat Simple_repeat 1 70 0 6 889 495 179 74 0 chr3 39947241 39947336 -119652447 - B3A SINE B2 -96 102 1 6 889 25 31 0 0 chr3 39947743 39947775 -119652008 + AT_rich Low_complexity Low_complexity 1 32 0 6 889 360 0 0 0 chr3 39948125 39948165 -119651618 + (CA)n Simple_repeat Simple_repeat 2 41 0 6 889 198 143 0 0 chr3 39948654 39948689 -119651094 + (GAAA)n Simple_repeat Simple_repeat 2 36 0 6 889 1410 280 35 11 chr3 39949922 39950468 -119649315 + Lx9 LINE L1 7059 7617 -27 6 889 210 37 0 0 chr3 39951907 39951934 -119647849 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 6 889 1250 28 0 0 chr3 39951934 39952079 -119647704 - B1_Mus2 SINE Alu -2 145 1 6 889 213 339 0 0 chr3 39952355 39952417 -119647366 + GA-rich Low_complexity Low_complexity 5 66 0 6 889 215 184 20 20 chr3 39953168 39953218 -119646565 + (CATA)n Simple_repeat Simple_repeat 3 52 0 6 889 290 189 0 0 chr3 39953668 39953721 -119646062 + (TA)n Simple_repeat Simple_repeat 1 53 0 6 889 561 147 0 0 chr3 39953721 39953816 -119645967 + (TG)n Simple_repeat Simple_repeat 2 96 0 6 889 282 264 0 33 chr3 39953806 39953990 -119645793 + (CATATA)n Simple_repeat Simple_repeat 2 179 0 6 889 248 288 0 27 chr3 39954001 39954076 -119645707 + (CATATA)n Simple_repeat Simple_repeat 3 75 0 6 889 334 270 0 22 chr3 39954933 39955024 -119644759 - PB1D10 SINE Alu -8 109 21 6 889 21 36 0 0 chr3 39955043 39955071 -119644712 + AT_rich Low_complexity Low_complexity 1 28 0 6 889 836 284 36 27 chr3 39955827 39956051 -119643732 - B4 SINE B4 -66 226 1 6 889 261 0 0 0 chr3 39958651 39958680 -119641103 + (A)n Simple_repeat Simple_repeat 1 29 0 6 889 1866 216 75 84 chr3 39959245 39959322 -119640461 - RLTR20B3 LTR ERVK 0 577 485 6 889 423 0 0 0 chr3 39959322 39959369 -119640414 + (CA)n Simple_repeat Simple_repeat 2 48 0 6 889 1866 216 75 84 chr3 39959369 39959853 -119639930 - RLTR20B3 LTR ERVK -93 484 23 6 889 464 257 74 7 chr3 39961378 39961527 -119638256 + B3A SINE B2 1 159 -39 6 889 1092 223 4 12 chr3 39961820 39962070 -119637713 - Lx6 LINE L1 -4 7456 7209 6 889 1141 270 17 2 chr3 39962045 39962373 -119637410 - Lx6 LINE L1 -169 7527 6933 6 889 521 365 93 59 chr3 39963033 39963476 -119636307 - LTR16B2 LTR ERVL -2 460 3 6 889 236 309 85 0 chr3 39963958 39964123 -119635660 - L1M3e LINE L1 -4247 2860 2682 6 889 945 235 140 31 chr3 39964340 39964661 -119635122 - RMER1C Other Other -1 1341 986 6 889 1078 45 38 0 chr3 39964662 39964795 -119634988 - B1_Mus2 SINE Alu -9 138 1 6 889 211 115 18 71 chr3 39964830 39964886 -119634897 + T-rich Low_complexity Low_complexity 2 54 0 6 889 652 257 42 10 chr3 39964886 39965079 -119634704 - RMER1C Other Other -355 987 789 6 889 323 306 45 45 chr3 39965137 39965315 -119634468 - L1MDa LINE L1 -5212 1421 1244 6 889 256 289 23 0 chr3 39965321 39965449 -119634334 - L1M3e LINE L1 -4962 2068 1938 6 889 368 277 171 70 chr3 39965822 39966191 -119633592 - MER57D LTR ERV1 0 411 6 6 889 326 389 47 3 chr3 39966293 39966613 -119633170 - Lx8 LINE L1 -297 7176 6843 6 889 256 222 37 12 chr3 39967024 39967106 -119632677 + (TA)n Simple_repeat Simple_repeat 2 85 0 6 889 954 270 56 8 chr3 39967730 39967980 -119631803 - B4A SINE B4 -16 276 15 6 889 735 12 0 0 chr3 39969761 39969845 -119629938 + (GAAA)n Simple_repeat Simple_repeat 4 87 0 6 889 676 288 89 8 chr3 39970097 39970355 -119629428 - MLT1D LTR MaLR -3 502 241 6 889 231 36 0 0 chr3 39970665 39970693 -119629090 + (T)n Simple_repeat Simple_repeat 1 28 0 6 889 14375 11 1 0 chr3 39970707 39973108 -119626675 - L1Md_A LINE L1 0 6582 4180 6 889 22 0 0 0 chr3 39973718 39973740 -119626043 + AT_rich Low_complexity Low_complexity 1 22 0 6 889 440 117 0 0 chr3 39974382 39974442 -119625341 + (TG)n Simple_repeat Simple_repeat 1 60 0 6 889 518 184 34 6 chr3 39974442 39974617 -119625166 + (TA)n Simple_repeat Simple_repeat 1 180 0 6 889 186 43 0 0 chr3 39974622 39974645 -119625138 + (CA)n Simple_repeat Simple_repeat 2 24 0 6 889 1128 68 0 13 chr3 39974674 39974823 -119624960 - B1_Mm SINE Alu 0 147 1 6 889 2526 79 0 59 chr3 39974832 39975207 -119624576 - L1_Mus2 LINE L1 0 6566 6214 6 889 22 35 0 0 chr3 39976551 39976580 -119623203 + AT_rich Low_complexity Low_complexity 1 29 0 6 890 577 294 28 11 chr3 39977266 39977445 -119622338 + B3A SINE B2 1 182 -16 6 890 524 320 24 15 chr3 39978151 39978357 -119621426 - MER58A DNA MER1_type -3 221 14 6 890 244 208 63 89 chr3 39979970 39980049 -119619734 + B1F SINE Alu 73 149 0 6 890 371 331 85 13 chr3 39984032 39984185 -119615598 + MER58A DNA MER1_type 12 175 -49 6 890 594 51 0 0 chr3 39985315 39985393 -119614390 + (CA)n Simple_repeat Simple_repeat 2 79 0 6 890 479 337 50 40 chr3 39986295 39986493 -119613290 + B4A SINE B4 1 200 -92 6 890 515 93 0 0 chr3 39987595 39987670 -119612113 - L1_Mus2 LINE L1 0 6566 6492 6 890 1596 74 251 0 chr3 39987671 39987942 -119611841 + L1_Mus2 LINE L1 6067 6405 -162 6 890 22 35 0 0 chr3 39988149 39988178 -119611605 + AT_rich Low_complexity Low_complexity 1 29 0 6 890 393 302 63 21 chr3 39989340 39989482 -119610301 + B1_Mur1 SINE Alu 2 149 0 6 890 294 278 245 20 chr3 39989770 39989809 -119609974 + ID_B1 SINE B4 37 216 -8 6 890 445 278 19 0 chr3 39989809 39989917 -119609866 + PB1D7 SINE Alu 3 112 -8 6 890 758 274 18 5 chr3 39990075 39990295 -119609488 - ID_B1 SINE B4 -1 223 1 6 890 22 0 0 0 chr3 39990505 39990527 -119609256 + AT_rich Low_complexity Low_complexity 1 22 0 6 890 744 138 0 0 chr3 39991291 39991458 -119608325 + (TCTCTG)n Simple_repeat Simple_repeat 2 168 0 6 890 237 251 18 0 chr3 39992437 39992604 -119607179 + (CA)n Simple_repeat Simple_repeat 2 171 0 6 890 444 247 11 0 chr3 39993364 39993457 -119606326 - B3 SINE B2 -13 203 110 6 890 580 307 19 24 chr3 39993521 39993728 -119606055 - B3 SINE B2 -10 206 1 6 890 443 112 0 12 chr3 39994640 39994721 -119605062 + (CATA)n Simple_repeat Simple_repeat 2 81 0 6 890 594 300 58 21 chr3 39994724 39994966 -119604817 - Lx8 LINE L1 -144 7329 7079 6 890 21 36 0 0 chr3 39996523 39996551 -119603232 + AT_rich Low_complexity Low_complexity 1 28 0 6 890 317 198 12 0 chr3 39996604 39996690 -119603093 + (TG)n Simple_repeat Simple_repeat 2 88 0 6 890 205 328 0 0 chr3 39997042 39997100 -119602683 + (CATA)n Simple_repeat Simple_repeat 3 60 0 6 890 1749 193 49 189 chr3 39997440 39998150 -119601633 - RMER19C LTR ERVK 0 611 1 6 890 2081 202 90 38 chr3 39998250 39998717 -119601066 + RLTR20B3 LTR ERVK 1 470 -107 6 890 432 0 0 0 chr3 39998717 39998765 -119601018 + (TG)n Simple_repeat Simple_repeat 2 49 0 6 890 2081 202 90 38 chr3 39998765 39998831 -119600952 + RLTR20B3 LTR ERVK 471 561 -16 6 890 3415 100 8 8 chr3 39998869 39999365 -119600418 - L1_Mus3 LINE L1 0 6638 6143 6 890 323 70 0 0 chr3 39999365 39999408 -119600375 + L1_Mus3 LINE L1 6063 6105 -533 6 890 1945 51 0 0 chr3 40000520 40000757 -119599026 + L1_Mus1 LINE L1 6330 6566 -1 1 890 317 22 44 0 chr3 40000958 40001003 -119598780 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 2 890 24 0 0 0 chr3 40001619 40001643 -119598140 + AT_rich Low_complexity Low_complexity 1 24 0 3 890 262 250 0 14 chr3 40002484 40002557 -119597226 + (TA)n Simple_repeat Simple_repeat 2 73 0 4 890 1009 234 214 3 chr3 40002617 40002930 -119596853 + MTE2a LTR MaLR 1 379 0 5 890 237 308 8 17 chr3 40002961 40003080 -119596703 + (TA)n Simple_repeat Simple_repeat 1 118 0 6 890 641 92 10 0 chr3 40003081 40003179 -119596604 + (TG)n Simple_repeat Simple_repeat 2 100 0 7 890 366 194 30 0 chr3 40003281 40003348 -119596435 + B1_Mur1 SINE Alu 60 128 -21 8 890 303 71 0 0 chr3 40003350 40003392 -119596391 + (GA)n Simple_repeat Simple_repeat 1 42 0 9 890 31571 73 1 3 chr3 40003712 40008913 -119590870 + L1Md_F2 LINE L1 303 5589 -297 1 890 8035 49 1 1 chr3 40008913 40009896 -119589887 + L1Md_F2 LINE L1 5590 6572 -13 1 890 387 309 156 82 chr3 40009937 40010194 -119589589 + B4A SINE B4 17 292 0 1 890 576 188 0 0 chr3 40010198 40010331 -119589452 + (CA)n Simple_repeat Simple_repeat 1 133 0 1 890 217 370 113 20 chr3 40010470 40010674 -119589109 - MIR SINE MIR -26 236 14 1 890 595 241 0 0 chr3 40011823 40011939 -119587844 + B3 SINE B2 1 116 -100 1 890 1242 89 0 0 chr3 40011948 40012162 -119587621 + (TC)n Simple_repeat Simple_repeat 1 214 0 1 890 240 111 0 0 chr3 40012163 40012199 -119587584 + (TG)n Simple_repeat Simple_repeat 2 37 0 1 890 21 57 0 0 chr3 40012270 40012305 -119587478 + AT_rich Low_complexity Low_complexity 1 35 0 1 890 1049 206 9 23 chr3 40014234 40014453 -119585330 + B3 SINE B2 1 216 0 1 890 396 277 73 40 chr3 40014502 40014626 -119585157 + ID_B1 SINE B4 94 221 -3 1 890 651 299 85 50 chr3 40014920 40015322 -119584461 + Lx8 LINE L1 6995 7410 -63 2 890 21 82 0 0 chr3 40015619 40015668 -119584115 + AT_rich Low_complexity Low_complexity 1 49 0 2 890 2233 198 63 19 chr3 40016249 40016571 -119583212 + Lx4B LINE L1 6243 6568 -490 2 890 3330 33 8 0 chr3 40016571 40016964 -119582819 + MTA_Mm LTR MaLR 1 396 0 2 890 2233 218 113 17 chr3 40016964 40017343 -119582440 + Lx4B LINE L1 6545 7029 -21 2 890 216 0 0 0 chr3 40017343 40017367 -119582416 + (TTAA)n Simple_repeat Simple_repeat 1 24 0 2 890 2019 241 171 15 chr3 40017367 40017383 -119582400 + Lx4B LINE L1 7030 7048 -2 2 890 365 376 112 35 chr3 40017936 40018195 -119581588 + LTR16A LTR ERVL 12 290 -161 2 890 351 0 0 0 chr3 40018225 40018264 -119581519 + (CA)n Simple_repeat Simple_repeat 2 40 0 2 890 489 142 0 0 chr3 40018918 40019031 -119580752 + (CAGA)n Simple_repeat Simple_repeat 4 116 0 2 890 590 161 0 22 chr3 40019065 40019243 -119580540 + GA-rich Low_complexity Low_complexity 2 175 0 2 890 609 69 0 0 chr3 40020018 40020105 -119579678 + (TG)n Simple_repeat Simple_repeat 1 87 0 2 890 718 281 5 48 chr3 40020130 40020172 -119579611 - B4 SINE B4 -19 273 235 3 890 840 290 26 47 chr3 40020172 40020556 -119579227 + MTE2a LTR MaLR 1 376 -3 3 890 718 281 5 48 chr3 40020556 40020700 -119579083 - B4 SINE B4 -58 234 95 3 890 537 16 0 0 chr3 40021237 40021299 -119578484 + (GA)n Simple_repeat Simple_repeat 2 63 0 3 890 449 297 122 79 chr3 40024367 40024645 -119575138 + B4 SINE B4 3 292 0 3 890 218 220 20 0 chr3 40024670 40024720 -119575063 + (CATA)n Simple_repeat Simple_repeat 4 54 0 3 890 456 62 0 0 chr3 40024723 40024787 -119574996 + (TC)n Simple_repeat Simple_repeat 2 65 0 3 890 237 33 0 0 chr3 40024787 40024817 -119574966 + (CA)n Simple_repeat Simple_repeat 1 30 0 3 890 207 250 0 0 chr3 40024840 40024896 -119574887 + (CA)n Simple_repeat Simple_repeat 1 56 0 3 890 225 369 27 9 chr3 40025479 40025591 -119574192 + Lx8 LINE L1 7061 7174 -299 3 890 254 304 77 43 chr3 40025763 40025880 -119573903 + RMER15 LTR ERVL 369 489 -86 3 890 1725 38 0 0 chr3 40026763 40026974 -119572809 + L1Md_A LINE L1 6372 6582 0 3 890 210 297 120 21 chr3 40027038 40027176 -119572607 - MIRc SINE MIR -88 188 33 4 890 702 44 0 0 chr3 40027703 40027793 -119571990 + (CA)n Simple_repeat Simple_repeat 2 91 0 4 890 555 301 45 53 chr3 40028453 40028699 -119571084 + B4A SINE B4 47 290 -2 4 890 205 196 0 42 chr3 40028736 40028784 -119570999 + (CA)n Simple_repeat Simple_repeat 1 46 0 4 890 1004 52 0 0 chr3 40029078 40029212 -119570571 + L1_Mus1 LINE L1 5923 6056 -511 4 890 602 231 8 16 chr3 40030543 40030666 -119569117 - B1_Mur1 SINE Alu -10 139 18 4 890 662 264 78 39 chr3 40030671 40030876 -119568907 - ID_B1 SINE B4 -5 219 7 4 890 375 336 111 86 chr3 40030918 40031198 -119568585 + B4A SINE B4 5 291 -1 4 890 384 22 0 0 chr3 40031198 40031243 -119568540 + (TG)n Simple_repeat Simple_repeat 1 45 0 4 890 461 209 29 0 chr3 40031289 40031394 -119568389 + PB1D9 SINE Alu 13 120 0 4 890 1046 324 32 16 chr3 40031714 40032156 -119567627 - Lx8 LINE L1 -134 7339 6891 5 890 755 255 97 109 chr3 40032442 40032772 -119567011 - RLTR18 LTR ERVK 0 616 291 5 890 259 231 0 0 chr3 40032770 40032822 -119566961 - RLTR18 LTR ERVK -562 54 3 5 890 407 236 89 33 chr3 40032883 40033063 -119566720 - Lx8 LINE L1 -2 7471 7282 5 890 470 338 0 7 chr3 40033065 40033208 -119566575 + Lx8 LINE L1 7116 7257 -216 5 890 715 259 0 0 chr3 40033961 40034100 -119565683 - B1_Mur1 SINE Alu -6 143 5 5 890 180 0 0 0 chr3 40034133 40034153 -119565630 + (TAAA)n Simple_repeat Simple_repeat 3 22 0 5 890 351 0 0 0 chr3 40034158 40034197 -119565586 + (CA)n Simple_repeat Simple_repeat 2 40 0 5 890 494 220 30 0 chr3 40035718 40035818 -119563965 - B1_Mur1 SINE Alu 0 149 47 5 890 25 0 0 0 chr3 40035904 40035929 -119563854 + AT_rich Low_complexity Low_complexity 1 25 0 5 890 22 56 0 0 chr3 40037181 40037217 -119562566 + AT_rich Low_complexity Low_complexity 1 36 0 5 890 254 286 60 53 chr3 40037289 40037422 -119562361 - MamRep434 DNA TcMar -292 134 1 6 890 184 279 48 32 chr3 40037575 40037638 -119562145 - MIRm SINE MIR -137 139 76 6 890 252 0 0 0 chr3 40039344 40039372 -119560411 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 6 890 759 248 16 24 chr3 40040180 40040377 -119559406 + B3A SINE B2 2 195 0 6 890 307 253 0 51 chr3 40040712 40040791 -119558992 + ID_B1 SINE B4 86 160 -64 6 890 254 298 0 0 chr3 40042182 40042239 -119557544 + PB1D10 SINE Alu 20 76 -41 6 890 212 294 0 0 chr3 40042543 40042594 -119557189 - B4A SINE B4 -147 145 95 6 890 243 265 12 35 chr3 40043214 40043300 -119556483 + MTE2a LTR MaLR 282 365 -14 6 890 285 342 135 1 chr3 40043349 40043482 -119556301 - MIR SINE MIR -88 188 32 6 890 227 250 0 0 chr3 40044087 40044135 -119555648 + GA-rich Low_complexity Low_complexity 2 49 0 6 890 510 46 0 0 chr3 40044702 40044767 -119555016 + (TG)n Simple_repeat Simple_repeat 1 65 0 7 890 243 0 0 0 chr3 40044767 40044793 -119554990 + (GA)n Simple_repeat Simple_repeat 1 27 0 7 890 388 282 17 98 chr3 40044861 40045034 -119554749 - RSINE1 SINE B4 -6 159 1 7 890 213 300 40 0 chr3 40045235 40045285 -119554498 - B1F SINE Alu -97 52 1 7 890 225 0 0 0 chr3 40045493 40045518 -119554265 + (TC)n Simple_repeat Simple_repeat 2 26 0 7 890 312 27 0 0 chr3 40045518 40045554 -119554229 + (TG)n Simple_repeat Simple_repeat 2 38 0 7 890 4697 91 19 24 chr3 40045605 40046307 -119553476 - L1_Mus3 LINE L1 -1 6637 5940 7 890 489 17 0 0 chr3 40046754 40046812 -119552971 + (TG)n Simple_repeat Simple_repeat 2 59 0 7 890 448 248 10 10 chr3 40046822 40046924 -119552859 - B1_Mur1 SINE Alu -32 117 16 7 890 667 261 57 31 chr3 40048242 40048436 -119551347 + ID_B1 SINE B4 1 199 -25 7 890 694 330 43 13 chr3 40048559 40048781 -119551002 + B4A SINE B4 3 231 -61 8 890 368 323 0 0 chr3 40048781 40048874 -119550909 + RSINE1 SINE B4 4 96 -69 8 890 387 0 0 0 chr3 40048898 40048941 -119550842 + (TG)n Simple_repeat Simple_repeat 1 43 0 8 890 248 276 0 0 chr3 40049111 40049169 -119550614 + (CA)n Simple_repeat Simple_repeat 1 58 0 8 890 208 297 0 13 chr3 40049679 40049754 -119550029 - MIRc SINE MIR -10 258 185 8 890 619 26 0 0 chr3 40049942 40050018 -119549765 - L1Md_F2 LINE L1 -110 6472 6397 8 890 470 99 0 62 chr3 40050018 40050115 -119549668 + L1Md_F2 LINE L1 6492 6582 0 8 890 33760 35 0 0 chr3 40050197 40055564 -119544219 + L1Md_T LINE L1 126 5589 -297 8 890 9056 4 0 0 chr3 40055564 40056560 -119543223 + L1Md_T LINE L1 5590 6585 0 8 890 1132 51 17 22 chr3 40056808 40056987 -119542796 + (TAGA)n Simple_repeat Simple_repeat 2 179 0 8 890 256 94 38 0 chr3 40057003 40057056 -119542727 + (TAGA)n Simple_repeat Simple_repeat 4 58 0 8 890 375 205 68 16 chr3 40057091 40057403 -119542380 + (TAGA)n Simple_repeat Simple_repeat 1 328 0 8 890 216 0 0 0 chr3 40059281 40059305 -119540478 + (T)n Simple_repeat Simple_repeat 1 24 0 8 890 760 167 72 0 chr3 40059327 40059465 -119540318 - B1_Mus1 SINE Alu 0 148 1 8 890 501 328 25 0 chr3 40060113 40060235 -119539548 + RSINE1 SINE B4 8 132 -33 9 890 189 107 0 0 chr3 40060235 40060263 -119539520 + (CA)n Simple_repeat Simple_repeat 1 28 0 9 890 3001 80 10 5 chr3 40060361 40060763 -119539020 + MTB_Mm LTR MaLR 1 404 -3 9 890 3722 121 82 2 chr3 40061116 40061712 -119538071 + Lx2A1 LINE L1 6364 7007 -1 9 890 314 301 0 0 chr3 40062807 40062880 -119536903 + ID4_ SINE ID 9 81 -2 9 890 577 301 34 42 chr3 40063141 40063377 -119536406 - LTR82B Low_complexity ERVL -511 319 86 9 890 722 233 36 78 chr3 40063452 40063671 -119536112 + B3 SINE B2 1 210 -6 9 890 423 56 0 0 chr3 40064290 40064344 -119535439 + (TG)n Simple_repeat Simple_repeat 1 54 0 9 890 290 263 53 0 chr3 40065178 40065254 -119534529 - MIRb SINE MIR -59 209 130 9 890 5921 55 22 5 chr3 40065718 40066473 -119533310 + L1Md_F2 LINE L1 5801 6568 -14 9 890 182 203 203 0 chr3 40066817 40066876 -119532907 - L3 LINE CR1 -896 3593 3523 1 890 181 219 29 86 chr3 40067478 40067548 -119532235 + L4 LINE RTE 1111 1176 -853 1 890 263 239 149 0 chr3 40068001 40068068 -119531715 + ID4_ SINE ID 2 78 -5 1 890 1047 245 85 65 chr3 40068115 40068455 -119531328 - MTE2b LTR MaLR -14 365 19 1 890 601 283 121 32 chr3 40068806 40068996 -119530787 + MTE2b LTR MaLR 1 207 -172 1 890 328 295 53 0 chr3 40069038 40069133 -119530650 + MLT1B LTR MaLR 251 350 -40 1 890 31 44 0 0 chr3 40070385 40070430 -119529353 + AT_rich Low_complexity Low_complexity 1 45 0 1 890 294 125 0 0 chr3 40070745 40070793 -119528990 + (GAAAA)n Simple_repeat Simple_repeat 3 50 0 1 890 831 172 23 105 chr3 40071718 40071937 -119527846 + RMER17C LTR ERVK 3 209 -201 1 890 1158 78 0 0 chr3 40071937 40072117 -119527666 + (TC)n Simple_repeat Simple_repeat 1 180 0 1 890 831 224 32 51 chr3 40072117 40072358 -119527425 + RMER17C LTR ERVK 82 313 -97 1 890 264 309 116 47 chr3 40072687 40072761 -119527022 + B4A SINE B4 9 80 -212 1 890 315 0 0 0 chr3 40072761 40072796 -119526987 + (CA)n Simple_repeat Simple_repeat 2 36 0 1 890 264 309 116 47 chr3 40072796 40072850 -119526933 + B4A SINE B4 81 146 -146 1 890 3158 28 8 0 chr3 40072846 40073233 -119526550 - MTA_Mm LTR MaLR -6 390 1 1 890 256 236 18 0 chr3 40073350 40073405 -119526378 + G-rich Low_complexity Low_complexity 3 58 0 1 890 535 251 161 16 chr3 40074745 40074931 -119524852 - ID_B1 SINE B4 -10 214 2 1 890 209 132 0 26 chr3 40075950 40075989 -119523794 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 1 890 562 284 229 0 chr3 40076027 40076245 -119523538 - B4A SINE B4 -20 272 5 1 890 225 119 0 0 chr3 40076517 40076559 -119523224 + (GTTTG)n Simple_repeat Simple_repeat 1 42 0 1 890 441 0 0 0 chr3 40077188 40077237 -119522546 + (TA)n Simple_repeat Simple_repeat 2 50 0 1 890 576 73 0 0 chr3 40078063 40078145 -119521638 + (CA)n Simple_repeat Simple_repeat 2 83 0 1 890 213 161 0 0 chr3 40078146 40078161 -119521622 + polypurine Low_complexity Low_complexity 1 15 0 1 890 899 52 33 44 chr3 40078161 40078342 -119521441 + (CAGAGA)n Simple_repeat Simple_repeat 2 180 0 1 890 213 161 0 0 chr3 40078342 40078382 -119521401 + GA-rich Low_complexity Low_complexity 16 55 0 1 890 313 249 6 6 chr3 40078389 40078567 -119521216 + (CA)n Simple_repeat Simple_repeat 1 178 0 1 890 275 343 0 95 chr3 40079444 40079560 -119520223 - MIRb SINE MIR -70 198 94 1 890 23 54 0 0 chr3 40079992 40080029 -119519754 + AT_rich Low_complexity Low_complexity 1 37 0 1 890 754 286 36 12 chr3 40080109 40080357 -119519426 + Lx8 LINE L1 6549 6802 -671 1 890 219 146 24 0 chr3 40080570 40080611 -119519172 - MIRb SINE MIR -8 260 219 1 890 642 26 0 0 chr3 40081527 40081603 -119518180 + (TC)n Simple_repeat Simple_repeat 2 77 0 1 890 303 93 0 0 chr3 40081603 40081645 -119518138 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 890 327 138 0 56 chr3 40082785 40082946 -119516837 + (TA)n Simple_repeat Simple_repeat 1 152 0 1 890 2159 121 12 3 chr3 40083041 40083364 -119516419 + ORR1A3 LTR MaLR 1 326 0 1 890 213 333 93 10 chr3 40083938 40084035 -119515748 + MIRb SINE MIR 26 130 -138 1 890 316 231 167 22 chr3 40085215 40085373 -119514410 - MIR SINE MIR -49 213 31 1 890 269 197 49 17 chr3 40085737 40085842 -119513941 - L1M5 LINE L1 -773 5467 5376 1 890 247 276 86 8 chr3 40086294 40086411 -119513372 - L1M5 LINE L1 -1041 5105 4980 1 890 224 222 189 27 chr3 40087244 40087318 -119512465 + MIRb SINE MIR 20 105 -163 1 890 522 287 7 7 chr3 40087578 40087722 -119512061 - B1F SINE Alu -5 144 1 1 890 804 196 0 14 chr3 40087811 40087951 -119511832 + B1_Mus1 SINE Alu 3 140 -8 1 890 629 253 77 12 chr3 40087951 40088119 -119511664 - B3A SINE B2 -17 181 3 1 890 373 278 97 47 chr3 40091522 40091850 -119507933 + L1M4 LINE L1 3519 3866 -2280 1 890 382 308 216 47 chr3 40091998 40092471 -119507312 + L1MC LINE L1 4702 5254 -892 1 890 321 231 15 15 chr3 40092490 40092556 -119507227 + RSINE1 SINE B4 2 67 -98 1 890 406 339 8 50 chr3 40092667 40092788 -119506995 + B1_Mur1 SINE Alu 1 116 -33 1 890 625 287 37 31 chr3 40092836 40092998 -119506785 + RSINE1 SINE B4 3 165 0 1 890 24 0 0 0 chr3 40093004 40093028 -119506755 + AT_rich Low_complexity Low_complexity 1 24 0 1 890 315 236 58 79 chr3 40093282 40093401 -119506382 + MTEa LTR MaLR 256 376 -3 1 890 787 162 58 6 chr3 40094115 40094599 -119505184 + (TAGA)n Simple_repeat Simple_repeat 1 508 0 1 890 498 79 34 0 chr3 40094630 40094719 -119505064 + (TAGA)n Simple_repeat Simple_repeat 1 92 0 1 890 23 33 0 0 chr3 40095178 40095208 -119504575 + AT_rich Low_complexity Low_complexity 1 30 0 1 890 4415 48 2 0 chr3 40096407 40096945 -119502838 + L1Md_F3 LINE L1 6046 6584 0 1 890 203 0 44 67 chr3 40097523 40097568 -119502215 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 1 890 249 330 114 25 chr3 40098086 40098288 -119501495 - LTR82A LTR ERVL -328 544 325 1 890 872 244 44 15 chr3 40098285 40098489 -119501294 - B3 SINE B2 0 216 7 1 890 345 280 110 0 chr3 40098631 40098749 -119501034 + MTEa LTR MaLR 3 133 -246 1 890 365 175 57 62 chr3 40098754 40098848 -119500935 + (TAGA)n Simple_repeat Simple_repeat 2 95 0 1 890 195 129 0 0 chr3 40098848 40098879 -119500904 + (TA)n Simple_repeat Simple_repeat 1 31 0 1 890 365 175 57 62 chr3 40098879 40098961 -119500822 + (TAGA)n Simple_repeat Simple_repeat 4 85 0 1 890 372 359 119 35 chr3 40100277 40100563 -119499220 + MER2 DNA MER2_type 34 343 -2 1 890 289 358 0 31 chr3 40101749 40101847 -119497936 - RMER20B LTR ERVK -22 605 511 1 890 736 261 71 123 chr3 40101923 40102377 -119497406 - RMER20B LTR ERVK -129 498 18 1 890 203 190 17 0 chr3 40102473 40102531 -119497252 + (TATATG)n Simple_repeat Simple_repeat 4 62 0 1 890 224 302 9 111 chr3 40102728 40102761 -119497022 - B4A SINE B4 -194 98 70 1 890 435 19 0 0 chr3 40102761 40102813 -119496970 + (TG)n Simple_repeat Simple_repeat 2 53 0 1 890 224 302 9 111 chr3 40102813 40102887 -119496896 - B4A SINE B4 -223 69 2 1 890 342 316 40 11 chr3 40102970 40103146 -119496637 + ERVL-E-int LTR ERVL 3284 3464 -2203 1 890 447 257 107 37 chr3 40104439 40104686 -119495097 - ORR1E LTR MaLR -19 360 48 1 890 202 143 41 0 chr3 40105069 40105118 -119494665 + GA-rich Low_complexity Low_complexity 2 52 0 1 890 1054 275 119 6 chr3 40106332 40106669 -119493114 + MTE2a LTR MaLR 5 379 0 1 890 301 221 17 42 chr3 40106957 40107075 -119492708 - L1M3 LINE L1 -1406 4734 4620 1 890 320 333 22 73 chr3 40107387 40107565 -119492218 + LTR79 LTR ERVL 261 429 -98 1 891 7303 79 4 1 chr3 40108536 40110064 -119489719 + L1_Mus1 LINE L1 5036 6567 0 1 891 314 191 95 0 chr3 40110208 40110271 -119489512 - L2 LINE L2 -1356 2063 1995 1 891 627 26 0 0 chr3 40111434 40111511 -119488272 + (TG)n Simple_repeat Simple_repeat 2 78 0 1 891 265 306 178 27 chr3 40112633 40112818 -119486965 + MER77 LTR ERVL 306 518 -89 1 891 348 77 0 0 chr3 40113537 40113589 -119486194 + (TCTA)n Simple_repeat Simple_repeat 4 55 0 1 891 597 14 0 0 chr3 40113612 40113682 -119486101 + (TG)n Simple_repeat Simple_repeat 1 70 0 1 891 675 310 12 78 chr3 40114083 40114530 -119485253 - Lx6 LINE L1 -1663 5797 5378 1 891 15658 117 29 9 chr3 40114559 40117803 -119481980 + L1Md_F LINE L1 417 3728 -2155 1 891 4486 85 0 2 chr3 40117803 40118394 -119481389 + L1_Mus1 LINE L1 5978 6567 0 1 891 1726 233 79 26 chr3 40118490 40118935 -119480848 - Lx6 LINE L1 -20 7440 6971 1 891 3027 34 17 0 chr3 40118935 40119286 -119480497 - IAPEY2_LTR LTR ERVK 0 357 1 1 891 1858 26 9 0 chr3 40119294 40119520 -119480263 - IAPEY3-int LTR ERVK -8 7672 7445 1 891 1038 244 66 7 chr3 40119551 40119824 -119479959 - Lx6 LINE L1 -573 6887 6599 1 891 273 250 22 36 chr3 40119826 40119946 -119479837 - L1M2 LINE L1 -897 5400 5266 1 891 261 0 0 0 chr3 40119946 40119975 -119479808 + (TG)n Simple_repeat Simple_repeat 2 30 0 1 891 237 284 117 27 chr3 40119975 40120042 -119479741 - L1M2 LINE L1 -878 5265 5194 1 891 23 54 0 0 chr3 40120066 40120103 -119479680 + AT_rich Low_complexity Low_complexity 1 37 0 1 891 980 222 92 105 chr3 40120844 40121226 -119478557 + MTE2a LTR MaLR 3 379 0 1 891 722 363 57 15 chr3 40121418 40121616 -119478167 - B4 SINE B4 -4 288 79 1 891 189 74 0 0 chr3 40121616 40121643 -119478140 + (TTG)n Simple_repeat Simple_repeat 2 28 0 1 891 722 363 57 15 chr3 40121643 40121707 -119478076 - B4 SINE B4 -214 78 15 1 891 8458 86 72 13 chr3 40121795 40121808 -119477975 - Lx3_Mus LINE L1 -6 7003 6992 1 891 270 0 0 0 chr3 40121808 40121838 -119477945 + (TTAA)n Simple_repeat Simple_repeat 3 32 0 1 891 8458 89 46 13 chr3 40121838 40123980 -119475803 - Lx3_Mus LINE L1 -18 6991 4783 1 891 309 26 0 0 chr3 40124337 40124375 -119475408 + (CA)n Simple_repeat Simple_repeat 2 39 0 1 891 1468 206 77 33 chr3 40124841 40125177 -119474606 + ORR1C2 LTR MaLR 1 351 -33 1 891 232 372 106 0 chr3 40125259 40125372 -119474411 + L2b LINE L2 3229 3353 -22 1 891 21 57 0 0 chr3 40125461 40125496 -119474287 + AT_rich Low_complexity Low_complexity 1 35 0 1 891 201 258 0 53 chr3 40126618 40126684 -119473099 + T-rich Low_complexity Low_complexity 65 129 0 1 891 258 32 0 0 chr3 40126684 40126715 -119473068 + (TG)n Simple_repeat Simple_repeat 2 32 0 1 891 202 174 0 42 chr3 40126715 40126779 -119473004 + (TTTG)n Simple_repeat Simple_repeat 1 61 0 1 891 498 61 0 0 chr3 40126806 40126872 -119472911 + (CA)n Simple_repeat Simple_repeat 2 67 0 1 891 333 281 126 43 chr3 40127004 40127305 -119472478 + L1M2 LINE L1 3930 4255 -1888 1 891 539 29 14 0 chr3 40127387 40127456 -119472327 + (TC)n Simple_repeat Simple_repeat 1 70 0 1 891 264 59 0 0 chr3 40127472 40127506 -119472277 + (GA)n Simple_repeat Simple_repeat 2 35 0 1 891 424 269 31 0 chr3 40127538 40127698 -119472085 + L1M2 LINE L1 4576 4740 -1403 1 891 577 281 110 27 chr3 40128083 40128607 -119471176 + L1M2 LINE L1 4846 5429 -862 1 891 3409 145 48 23 chr3 40128684 40129436 -119470347 - Lx5 LINE L1 -786 6264 5496 1 891 231 304 37 56 chr3 40129561 40129669 -119470114 - MER63B DNA AcHobo -5 431 326 1 891 240 191 0 0 chr3 40129670 40129717 -119470066 + Lx5 LINE L1 6672 6718 -332 2 891 260 81 127 16 chr3 40129734 40129797 -119469986 + Lx4B LINE L1 6953 7022 -36 2 891 1234 198 47 4 chr3 40129860 40130114 -119469669 + L1_Mur2 LINE L1 5333 5597 -280 2 891 1521 214 3 3 chr3 40130492 40130788 -119468995 - Lx4B LINE L1 -1 7049 6754 2 891 21441 154 75 8 chr3 40130791 40134517 -119465266 - Lx4B LINE L1 -1017 6041 2018 2 891 435 19 0 0 chr3 40134517 40134569 -119465214 + (TG)n Simple_repeat Simple_repeat 1 52 0 2 891 21441 154 77 8 chr3 40134569 40135317 -119464466 - Lx4B LINE L1 -3860 2017 1250 2 891 2239 110 0 58 chr3 40135317 40135663 -119464120 - ORR1A3 LTR MaLR 0 326 1 2 891 21441 236 149 16 chr3 40135663 40135984 -119463799 - Lx4B LINE L1 -4628 1249 870 2 891 305 309 24 0 chr3 40136525 40136609 -119463174 + B3A SINE B2 92 177 -21 2 891 486 91 0 0 chr3 40136609 40136686 -119463097 + (TAGA)n Simple_repeat Simple_repeat 2 78 0 2 891 180 0 0 0 chr3 40136686 40136705 -119463078 + (CA)n Simple_repeat Simple_repeat 2 21 0 2 891 602 245 38 131 chr3 40136731 40136914 -119462869 + B4 SINE B4 127 292 0 2 891 183 175 0 0 chr3 40136947 40137004 -119462779 + (TCTCTG)n Simple_repeat Simple_repeat 2 58 0 2 891 246 32 0 0 chr3 40137045 40137076 -119462707 + (CA)n Simple_repeat Simple_repeat 2 32 0 2 891 486 0 0 0 chr3 40137076 40137129 -119462654 + (GA)n Simple_repeat Simple_repeat 2 55 0 2 891 3186 62 0 5 chr3 40137430 40137837 -119461946 + L1Md_F2 LINE L1 6176 6580 -2 2 891 284 185 73 12 chr3 40138004 40138086 -119461697 + (TATATG)n Simple_repeat Simple_repeat 6 92 0 2 891 252 0 0 0 chr3 40138209 40138237 -119461546 + (TC)n Simple_repeat Simple_repeat 2 29 0 2 891 430 277 81 43 chr3 40138736 40138900 -119460883 + B3A SINE B2 1 175 -23 2 891 296 45 0 43 chr3 40138900 40138947 -119460836 + (TATATG)n Simple_repeat Simple_repeat 3 47 0 2 891 430 277 81 43 chr3 40138947 40138967 -119460816 + B3A SINE B2 176 192 -6 2 891 476 313 58 26 chr3 40139485 40139639 -119460144 + RSINE1 SINE B4 4 162 -3 2 891 295 274 0 0 chr3 40140075 40140148 -119459635 + (CATA)n Simple_repeat Simple_repeat 4 76 0 2 891 940 208 0 16 chr3 40140202 40140393 -119459390 + Lx6 LINE L1 7099 7286 -174 2 891 301 304 70 56 chr3 40140873 40141016 -119458767 - B3A SINE B2 0 198 54 2 891 1853 239 11 0 chr3 40141191 40141550 -119458233 + ORR1D2 LTR MaLR 1 363 -7 2 891 746 169 23 0 chr3 40141550 40141680 -119458103 + ORR1D2 LTR MaLR 1 133 -237 2 891 435 68 0 0 chr3 40143670 40143729 -119456054 + (CAGA)n Simple_repeat Simple_repeat 2 60 0 2 891 957 294 38 9 chr3 40144292 40144601 -119455182 + MER34A1 LTR ERV1 1 318 -269 2 891 306 302 82 70 chr3 40144601 40144772 -119455011 - MTEa LTR MaLR 0 379 207 2 891 655 213 47 40 chr3 40144804 40144965 -119454818 + ORR1D2 LTR MaLR 8 260 -110 2 891 1822 202 70 15 chr3 40144965 40145362 -119454421 - MTC LTR MaLR 0 421 3 2 891 655 189 49 59 chr3 40145362 40145475 -119454308 + ORR1D2 LTR MaLR 226 361 -9 2 891 296 360 44 44 chr3 40145455 40145635 -119454148 - MTEa LTR MaLR -179 180 1 2 891 479 256 48 36 chr3 40145646 40145812 -119453971 + MER34A1 LTR ERV1 326 493 -94 2 891 635 238 43 6 chr3 40146143 40146304 -119453479 + MER33 DNA MER1_type 11 177 -147 2 891 785 330 64 4 chr3 40146329 40146594 -119453189 - MTEa LTR MaLR -98 281 1 2 891 402 275 83 11 chr3 40147266 40147446 -119452337 - ERVL-int LTR ERVL -1821 3936 3744 2 891 6700 89 16 4 chr3 40147655 40148601 -119451182 + Lx3_Mus LINE L1 6053 7009 0 2 891 234 0 0 0 chr3 40148651 40148677 -119451106 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 2 891 269 253 0 48 chr3 40149054 40149137 -119450646 + ERVL-E-int LTR ERVL 2698 2776 -2891 2 891 480 253 149 117 chr3 40149221 40149409 -119450374 + B3A SINE B2 1 194 -4 2 891 1006 108 0 6 chr3 40149604 40149762 -119450021 + Lx3_Mus LINE L1 6407 6563 -446 2 891 239 54 27 0 chr3 40150299 40150336 -119449447 + (TTG)n Simple_repeat Simple_repeat 1 38 0 2 891 308 169 0 27 chr3 40150342 40150415 -119449368 - Lx7 LINE L1 -15 7681 7611 2 891 277 283 10 29 chr3 40150427 40150529 -119449254 + GA-rich Low_complexity Low_complexity 3 102 0 2 891 4105 42 4 10 chr3 40151448 40151957 -119447826 + L1Md_F2 LINE L1 6074 6579 -3 2 891 188 274 20 0 chr3 40152650 40152701 -119447082 - MIR SINE MIR -101 161 110 2 891 1085 257 125 29 chr3 40154027 40154372 -119445411 + MTEa LTR MaLR 1 378 -1 2 891 1944 221 55 40 chr3 40154383 40154931 -119444852 - RLTR20B3 LTR ERVK -15 562 7 2 891 441 95 0 0 chr3 40154959 40155022 -119444761 + (TTTTG)n Simple_repeat Simple_repeat 2 64 0 2 891 356 303 61 31 chr3 40155022 40155151 -119444632 - Lx8 LINE L1 -640 7056 6936 2 891 1232 199 9 9 chr3 40155152 40155375 -119444408 + URR1B DNA MER1_type 3 225 0 2 891 702 294 96 55 chr3 40156989 40157334 -119442449 - ORR1E LTR MaLR 0 359 1 2 891 259 78 39 0 chr3 40157358 40157409 -119442374 + (TTTTTG)n Simple_repeat Simple_repeat 2 54 0 2 891 269 349 54 14 chr3 40158230 40158378 -119441405 - RMER15 LTR ERVL -14 561 408 2 891 232 342 0 64 chr3 40158774 40158852 -119440931 - tRNA-Ala-GCY_ tRNA tRNA -1 74 2 2 891 332 269 95 9 chr3 40158865 40158970 -119440813 - PB1 SINE Alu -2 125 12 2 891 245 350 92 17 chr3 40158903 40159022 -119440761 - ID_B1 SINE B4 -67 157 30 2 891 259 334 92 37 chr3 40159049 40159235 -119440548 + MLT1F1 LTR MaLR 37 236 -343 2 891 366 278 72 59 chr3 40159432 40159585 -119440198 + MLT1F1 LTR MaLR 415 569 0 2 891 903 308 34 61 chr3 40160015 40160261 -119439522 + B4A SINE B4 7 246 -46 2 891 2473 162 2 28 chr3 40160261 40160693 -119439090 - MTC LTR MaLR 0 421 1 2 891 903 308 34 61 chr3 40160693 40160740 -119439043 + B4A SINE B4 247 292 0 2 891 333 287 98 37 chr3 40162338 40162501 -119437282 + B3 SINE B2 2 174 -24 2 891 531 0 0 0 chr3 40162501 40162560 -119437223 + (TAGA)n Simple_repeat Simple_repeat 2 60 0 2 891 189 0 0 0 chr3 40162718 40162739 -119437044 + (TCCC)n Simple_repeat Simple_repeat 2 22 0 2 891 246 171 14 14 chr3 40163261 40163332 -119436451 - Lx9 LINE L1 -1 7643 7573 2 891 324 0 0 0 chr3 40163337 40163373 -119436410 + (TG)n Simple_repeat Simple_repeat 2 37 0 2 891 739 180 40 23 chr3 40163378 40163554 -119436229 - Lx9 LINE L1 -165 7479 7301 2 891 569 296 58 9 chr3 40163637 40163995 -119435788 + L1ME1 LINE L1 5476 5887 -292 2 891 237 299 35 115 chr3 40164011 40164098 -119435685 + ID4_ SINE ID 1 80 -3 2 891 317 323 31 0 chr3 40164191 40164287 -119435496 + B4 SINE B4 90 188 -104 2 891 205 250 0 0 chr3 40164718 40164762 -119435021 + GA-rich Low_complexity Low_complexity 2 45 0 2 891 246 32 0 0 chr3 40165578 40165609 -119434174 + (CA)n Simple_repeat Simple_repeat 2 32 0 2 891 2357 283 107 24 chr3 40166159 40167242 -119432541 + Lx9 LINE L1 6435 7606 -38 2 891 563 262 142 104 chr3 40167350 40167533 -119432250 + B3A SINE B2 2 191 -4 2 891 535 55 0 81 chr3 40168229 40168328 -119431455 + L1_Mus1 LINE L1 6465 6555 -12 2 891 22 0 0 0 chr3 40168370 40168392 -119431391 + AT_rich Low_complexity Low_complexity 1 22 0 2 891 219 36 0 0 chr3 40168413 40168441 -119431342 + (TTG)n Simple_repeat Simple_repeat 1 28 0 2 891 1107 75 7 14 chr3 40168446 40168594 -119431189 - B1_Mus2 SINE Alu 0 147 1 2 891 338 307 137 12 chr3 40169727 40169895 -119429888 - MLT1G LTR MaLR -392 199 11 2 891 387 0 0 0 chr3 40170635 40170678 -119429105 + (CA)n Simple_repeat Simple_repeat 2 44 0 2 891 473 229 27 1 chr3 40171642 40171770 -119428013 - MTD LTR MaLR -20 399 244 2 891 625 249 94 6 chr3 40171808 40171978 -119427805 + B3 SINE B2 5 189 -27 2 891 247 47 14 86 chr3 40171980 40172050 -119427733 + (CAAAAA)n Simple_repeat Simple_repeat 3 67 0 2 891 27 29 0 0 chr3 40172059 40172093 -119427690 + AT_rich Low_complexity Low_complexity 1 34 0 2 891 748 279 73 31 chr3 40172143 40172402 -119427381 - MTD LTR MaLR -149 270 1 2 891 240 276 35 0 chr3 40172402 40172458 -119427325 + B4 SINE B4 21 78 -214 2 891 238 368 11 11 chr3 40172927 40173015 -119426768 + MIR SINE MIR 10 97 -165 2 891 21 57 0 0 chr3 40173148 40173183 -119426600 + AT_rich Low_complexity Low_complexity 1 35 0 2 891 690 272 47 12 chr3 40173888 40174059 -119425724 - ID_B1 SINE B4 -33 191 15 2 891 275 115 39 0 chr3 40176096 40176148 -119423635 + (TCTA)n Simple_repeat Simple_repeat 1 54 0 2 891 7063 112 12 13 chr3 40176178 40177655 -119422128 - L1_Mus3 LINE L1 0 6638 5175 2 891 323 325 0 0 chr3 40177659 40177739 -119422044 - PB1D10 SINE Alu -35 82 3 2 891 502 228 55 31 chr3 40177805 40177896 -119421887 - MTE2b LTR MaLR -2 377 282 2 891 216 0 0 0 chr3 40177896 40177920 -119421863 + (CATTA)n Simple_repeat Simple_repeat 4 27 0 2 891 842 234 427 6 chr3 40177920 40178119 -119421664 - MTE2b LTR MaLR -98 281 1 2 891 487 244 63 11 chr3 40178556 40178709 -119421074 - MTD LTR MaLR -59 360 190 2 891 1054 114 23 0 chr3 40178863 40179039 -119420744 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 2 891 333 0 0 0 chr3 40179039 40179076 -119420707 + (GGAA)n Simple_repeat Simple_repeat 1 37 0 2 891 12270 91 26 7 chr3 40179085 40181443 -119418340 - L1VL4 LINE L1 -726 2833 438 2 891 275 87 43 0 chr3 40182626 40182672 -119417111 + (GAAAA)n Simple_repeat Simple_repeat 3 50 0 2 891 575 133 0 9 chr3 40183184 40183290 -119416493 + (GGAA)n Simple_repeat Simple_repeat 2 106 0 2 891 567 164 54 5 chr3 40183338 40183544 -119416239 + (TAGA)n Simple_repeat Simple_repeat 1 216 0 2 891 585 293 19 79 chr3 40183685 40183900 -119415883 + B3A SINE B2 3 204 -12 2 891 2307 214 12 107 chr3 40184169 40184844 -119414939 + RMER19C LTR ERVK 1 611 0 2 891 291 28 0 0 chr3 40185525 40185561 -119414222 + (CA)n Simple_repeat Simple_repeat 2 37 0 2 891 1109 279 3 13 chr3 40185561 40185863 -119413920 + Lx8 LINE L1 7037 7335 -138 2 891 445 65 26 13 chr3 40187047 40187125 -119412658 + (CAGA)n Simple_repeat Simple_repeat 2 80 0 2 891 1967 146 9 102 chr3 40188851 40189302 -119410481 - RMER17C LTR ERVK -1 409 1 2 891 577 268 54 5 chr3 40189476 40189629 -119410154 + MTE2b LTR MaLR 224 379 0 3 891 1133 117 0 0 chr3 40190624 40190795 -119408988 + L1_Mm LINE L1 5427 5597 -286 3 891 226 152 111 83 chr3 40190792 40190864 -119408919 + Lx LINE L1 6554 6627 -27 3 891 290 26 26 0 chr3 40191456 40191495 -119408288 + (CAA)n Simple_repeat Simple_repeat 3 42 0 3 891 1239 55 0 0 chr3 40192047 40192193 -119407590 + B1_Mus2 SINE Alu 1 146 -1 3 891 22 35 0 0 chr3 40192233 40192262 -119407521 + AT_rich Low_complexity Low_complexity 1 29 0 3 891 630 256 81 23 chr3 40192281 40192453 -119407330 - B3A SINE B2 -16 182 1 3 891 244 352 73 30 chr3 40192843 40193007 -119406776 - L2 LINE L2 -560 2859 2689 3 891 5808 44 1 8 chr3 40193017 40193768 -119406015 - MT-int LTR MaLR -75 1023 193 3 891 208 188 62 0 chr3 40193768 40193816 -119405967 + (TTTA)n Simple_repeat Simple_repeat 3 53 0 3 891 4432 52 2 33 chr3 40193826 40194404 -119405379 - LTRIS2 LTR ERV1 0 564 5 3 891 245 270 188 16 chr3 40194439 40194503 -119405280 - B1F SINE Alu -56 93 19 3 891 594 0 0 0 chr3 40194806 40194872 -119404911 + (TC)n Simple_repeat Simple_repeat 1 66 0 3 891 2863 174 124 37 chr3 40194992 40195901 -119403882 + RLTR13D1 LTR ERVK 11 1023 0 3 891 266 307 48 29 chr3 40196459 40196563 -119403220 + PB1D10 SINE Alu 1 106 -11 3 891 215 61 30 0 chr3 40196564 40196597 -119403186 + (TAA)n Simple_repeat Simple_repeat 3 36 0 3 891 753 249 255 61 chr3 40198610 40198853 -119400930 - B4A SINE B4 0 292 3 3 891 361 284 26 0 chr3 40198990 40199106 -119400677 + Lx7 LINE L1 6814 6932 -764 3 891 206 281 0 10 chr3 40200071 40200175 -119399608 + (TG)n Simple_repeat Simple_repeat 2 104 0 3 891 199 233 29 19 chr3 40200217 40200322 -119399461 + (TATATG)n Simple_repeat Simple_repeat 5 110 0 3 891 186 222 0 32 chr3 40200383 40200476 -119399307 + (TG)n Simple_repeat Simple_repeat 1 90 0 3 891 203 252 14 34 chr3 40200506 40200654 -119399129 + (TATATG)n Simple_repeat Simple_repeat 2 146 0 3 891 213 186 0 41 chr3 40201015 40201088 -119398695 + (CA)n Simple_repeat Simple_repeat 2 71 0 3 891 297 0 0 0 chr3 40201271 40201304 -119398479 + (TTTA)n Simple_repeat Simple_repeat 4 36 0 3 891 332 59 0 19 chr3 40201857 40201909 -119397874 + (TTTG)n Simple_repeat Simple_repeat 3 53 0 3 891 2586 82 15 3 chr3 40201999 40202341 -119397442 + ORR1A1 LTR MaLR 1 346 0 3 891 413 352 138 17 chr3 40202688 40202928 -119396855 + B4A SINE B4 6 274 -18 3 891 194 91 30 0 chr3 40202940 40202973 -119396810 + (CA)n Simple_repeat Simple_repeat 1 34 0 3 891 972 97 99 28 chr3 40203778 40203959 -119395824 + Lx LINE L1 6448 6641 -13 3 891 887 35 0 17 chr3 40203959 40204075 -119395708 + (CATA)n Simple_repeat Simple_repeat 2 115 0 3 891 1196 259 24 52 chr3 40205048 40205123 -119394660 - MTEa LTR MaLR -8 371 297 3 891 444 111 0 12 chr3 40205123 40205205 -119394578 - L1Md_F2 LINE L1 0 6582 6502 3 891 1196 259 24 52 chr3 40205205 40205459 -119394324 - MTEa LTR MaLR -83 296 51 3 891 262 348 0 11 chr3 40205797 40205890 -119393893 + (CGTG)n Simple_repeat Simple_repeat 2 93 0 3 891 226 191 43 29 chr3 40206544 40206614 -119393169 + B2_Mm2 SINE B2 15 85 -110 3 891 1111 284 27 30 chr3 40208513 40208850 -119390933 - MTE2b LTR MaLR -25 354 19 3 891 2039 288 29 42 chr3 40209343 40210145 -119389638 - Lx8 LINE L1 -147 7326 6536 3 891 1032 223 18 55 chr3 40210182 40210414 -119389369 + ORR1C2 LTR MaLR 1 223 -161 3 891 1305 83 0 0 chr3 40210414 40210594 -119389189 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 3 891 1032 223 18 55 chr3 40210594 40210636 -119389147 + ORR1C2 LTR MaLR 224 264 -120 3 891 501 17 0 0 chr3 40210638 40210696 -119389087 + (TCTA)n Simple_repeat Simple_repeat 3 60 0 3 891 1005 198 61 0 chr3 40210697 40210894 -119388889 + ORR1C2 LTR MaLR 176 384 0 3 891 34794 51 2 2 chr3 40210904 40216305 -119383478 - L1Md_F3 LINE L1 -14 6570 1170 3 891 4084 150 7 3 chr3 40216311 40217052 -119382731 - L1Md_F3 LINE L1 -5519 1205 462 3 891 305 360 86 7 chr3 40217309 40217449 -119382334 - MIRc SINE MIR -69 199 49 3 891 237 303 30 101 chr3 40217562 40217731 -119382052 + L2c LINE L2 3222 3378 -9 3 891 817 253 47 5 chr3 40218082 40218273 -119381510 + ID_B1 SINE B4 1 199 -25 3 891 189 151 18 36 chr3 40219201 40219256 -119380527 + GA-rich Low_complexity Low_complexity 2 55 0 3 891 459 0 0 0 chr3 40219604 40219655 -119380128 + (TA)n Simple_repeat Simple_repeat 1 51 0 3 891 247 254 16 0 chr3 40220928 40220991 -119378792 + Lx6 LINE L1 6513 6576 -884 3 891 753 181 77 55 chr3 40221597 40221778 -119378005 + B2_Mm2 SINE B2 2 186 -9 3 891 624 14 0 0 chr3 40221940 40222013 -119377770 + (CA)n Simple_repeat Simple_repeat 2 74 0 3 891 2533 66 0 0 chr3 40222152 40222454 -119377329 + L1_Mus2 LINE L1 6265 6566 0 3 891 230 340 19 0 chr3 40223604 40223707 -119376076 + (CA)n Simple_repeat Simple_repeat 1 105 0 3 891 180 0 0 0 chr3 40224158 40224178 -119375605 + (TG)n Simple_repeat Simple_repeat 2 21 0 3 891 23 0 0 0 chr3 40225950 40225973 -119373810 + AT_rich Low_complexity Low_complexity 1 23 0 3 891 310 278 120 0 chr3 40226040 40226148 -119373635 + MLT1B LTR MaLR 1 121 -269 3 891 188 135 27 0 chr3 40226244 40226281 -119373502 + (CA)n Simple_repeat Simple_repeat 1 38 0 3 891 471 18 0 0 chr3 40227021 40227077 -119372706 + (CA)n Simple_repeat Simple_repeat 2 57 0 3 891 289 298 83 21 chr3 40229212 40229308 -119370475 + PB1 SINE Alu 1 102 -25 3 891 252 77 0 0 chr3 40229381 40229420 -119370363 + (GA)n Simple_repeat Simple_repeat 2 40 0 3 891 618 99 0 0 chr3 40229547 40229638 -119370145 + (TAG)n Simple_repeat Simple_repeat 2 92 0 3 891 357 267 129 0 chr3 40230135 40230236 -119369547 + PB1D10 SINE Alu 1 114 -3 3 891 210 143 0 0 chr3 40230830 40230865 -119368918 + (TTAG)n Simple_repeat Simple_repeat 2 36 0 3 891 608 267 15 65 chr3 40230890 40231090 -119368693 + RMER30 DNA MER1_type 11 200 -2 3 891 237 383 77 15 chr3 40231137 40231267 -119368516 + LTR16B2 LTR ERVL 320 457 -5 3 891 642 26 0 0 chr3 40231958 40232034 -119367749 + (TC)n Simple_repeat Simple_repeat 1 76 0 3 891 234 0 0 0 chr3 40232665 40232691 -119367092 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 3 891 588 267 42 47 chr3 40232851 40233063 -119366720 - MLT1F1 LTR MaLR 0 569 359 3 891 258 280 63 63 chr3 40233279 40233407 -119366376 + L1ME1 LINE L1 5472 5599 -845 3 891 22 35 0 0 chr3 40233407 40233436 -119366347 + AT_rich Low_complexity Low_complexity 1 29 0 3 891 277 306 33 0 chr3 40233593 40233714 -119366069 + L1ME1 LINE L1 5785 5909 -270 3 891 310 232 79 12 chr3 40235317 40235439 -119364344 - MTE2b LTR MaLR 0 419 277 3 891 789 41 0 0 chr3 40235460 40235557 -119364226 + (TAGA)n Simple_repeat Simple_repeat 2 98 0 3 891 382 328 67 38 chr3 40235574 40235888 -119363895 - L1ME1 LINE L1 -214 5965 5643 3 891 311 331 119 50 chr3 40235982 40236360 -119363423 - L1MD LINE L1 -759 5387 4984 3 891 285 345 78 12 chr3 40236463 40236721 -119363062 - L1ME1 LINE L1 -1314 4832 4558 3 891 623 302 72 97 chr3 40237355 40237634 -119362149 + B4A SINE B4 21 292 0 3 891 249 210 0 31 chr3 40237634 40237698 -119362085 + (CA)n Simple_repeat Simple_repeat 1 62 0 3 892 1667 208 41 8 chr3 40239312 40239675 -119360108 - Lx9 LINE L1 -329 7315 6941 3 892 1115 220 79 0 chr3 40239673 40239964 -119359819 + Lx9 LINE L1 7329 7642 -2 3 892 317 319 71 43 chr3 40240888 40240968 -119358815 - MIRb SINE MIR -79 189 107 3 892 866 252 19 15 chr3 40240968 40241173 -119358610 + ID_B1 SINE B4 3 208 -16 3 892 522 0 0 0 chr3 40241173 40241231 -119358552 + (TAGA)n Simple_repeat Simple_repeat 1 58 0 3 892 317 319 71 43 chr3 40241231 40241290 -119358493 - MIRb SINE MIR -162 106 46 3 892 446 145 0 0 chr3 40241329 40241398 -119358385 + B2_Mm2 SINE B2 1 69 -126 3 892 366 146 0 0 chr3 40241438 40241493 -119358290 + B2_Mm2 SINE B2 47 101 -94 3 892 327 65 0 0 chr3 40241508 40241554 -119358229 + (TAAA)n Simple_repeat Simple_repeat 4 49 0 3 892 585 105 0 0 chr3 40241560 40241646 -119358137 + (GAA)n Simple_repeat Simple_repeat 2 87 0 3 892 1357 40 11 0 chr3 40241646 40241822 -119357961 + (GGA)n Simple_repeat Simple_repeat 2 179 0 3 892 1773 197 32 30 chr3 40243078 40243449 -119356334 - ORR1D1 LTR MaLR -2 372 1 3 892 592 277 210 38 chr3 40243652 40243956 -119355827 + MTE2a LTR MaLR 19 342 -37 3 892 296 312 100 0 chr3 40245098 40245178 -119354605 - RSINE1 SINE B4 -77 88 1 3 892 41548 14 1 6 chr3 40245192 40251551 -119348232 - L1Md_A LINE L1 0 6582 260 3 892 1888 280 41 31 chr3 40251867 40252450 -119347333 + Lx7 LINE L1 6779 7367 -329 3 892 28 61 0 0 chr3 40252561 40252610 -119347173 + AT_rich Low_complexity Low_complexity 1 49 0 3 892 789 279 31 31 chr3 40252612 40252900 -119346883 + B4A SINE B4 3 290 -2 3 892 268 424 49 0 chr3 40253018 40253223 -119346560 - Arthur1 DNA Tip100 -1385 2562 2348 3 892 387 0 0 0 chr3 40253306 40253349 -119346434 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 892 315 188 94 0 chr3 40253516 40253580 -119346203 - PB1D10 SINE Alu -2 115 46 3 892 1146 301 138 47 chr3 40253686 40253966 -119345817 - Arthur1 DNA Tip100 -1909 2038 1746 3 892 405 0 0 0 chr3 40253966 40254011 -119345772 + (CA)n Simple_repeat Simple_repeat 2 46 0 3 892 1146 301 138 47 chr3 40254011 40254710 -119345073 - Arthur1 DNA Tip100 -2202 1745 972 3 892 591 121 24 21 chr3 40255367 40255495 -119344288 + L1Md_F2 LINE L1 5452 5586 -297 3 892 8503 49 3 3 chr3 40255495 40256473 -119343310 + L1Md_F2 LINE L1 5587 6564 -18 3 892 185 94 31 0 chr3 40256473 40256505 -119343278 + (TA)n Simple_repeat Simple_repeat 1 33 0 3 892 374 319 41 71 chr3 40256658 40256827 -119342956 - MER57C2 LTR ERV1 -25 409 246 3 892 592 165 15 8 chr3 40257283 40257417 -119342366 + GA-rich Low_complexity Low_complexity 2 136 0 3 892 7923 198 46 18 chr3 40257447 40260119 -119339664 - Lx6 LINE L1 -4 7456 4711 3 892 351 0 0 0 chr3 40260307 40260346 -119339437 + (CA)n Simple_repeat Simple_repeat 1 39 0 3 892 905 252 154 36 chr3 40260601 40260895 -119338888 + Lx8 LINE L1 7008 7339 -134 3 892 510 25 74 0 chr3 40260895 40260976 -119338807 + (CAGA)n Simple_repeat Simple_repeat 2 88 0 4 892 905 252 154 36 chr3 40260976 40261097 -119338686 + Lx8 LINE L1 7340 7472 -1 3 892 4008 204 78 75 chr3 40261187 40262322 -119337461 - Lx5 LINE L1 -3 7047 5910 4 892 397 238 25 0 chr3 40262678 40262758 -119337025 + B4 SINE B4 3 84 -208 4 892 788 206 107 41 chr3 40262753 40262950 -119336833 + B3 SINE B2 7 216 0 4 892 609 292 0 0 chr3 40262968 40263098 -119336685 + B4 SINE B4 83 212 -80 4 892 528 257 37 37 chr3 40263157 40263364 -119336419 + MTE2b LTR MaLR 28 239 -180 4 892 270 0 0 0 chr3 40264689 40264719 -119335064 + (CA)n Simple_repeat Simple_repeat 1 30 0 4 892 289 294 115 23 chr3 40265256 40265343 -119334440 + PB1D9 SINE Alu 19 113 -7 4 892 2100 216 82 19 chr3 40265822 40266356 -119333427 + RLTR12A LTR ERVK 1 568 0 4 892 214 376 44 19 chr3 40266646 40266806 -119332977 + L3 LINE CR1 4249 4412 -77 4 892 557 324 83 77 chr3 40267301 40267775 -119332008 + MLT1G1 LTR MaLR 60 487 -2 4 892 911 308 57 18 chr3 40267790 40268071 -119331712 + B4A SINE B4 1 292 0 4 892 24 0 0 0 chr3 40268577 40268601 -119331182 + AT_rich Low_complexity Low_complexity 1 24 0 4 892 716 279 94 23 chr3 40270867 40271420 -119328363 + L1M4 LINE L1 4981 5574 -604 4 892 228 242 46 46 chr3 40271522 40271587 -119328196 + ORR1E LTR MaLR 6 70 -289 4 892 705 106 0 0 chr3 40271721 40271825 -119327958 + (TC)n Simple_repeat Simple_repeat 1 104 0 4 892 396 0 0 0 chr3 40271971 40272015 -119327768 + (TTA)n Simple_repeat Simple_repeat 2 45 0 4 892 253 222 0 0 chr3 40272018 40272072 -119327711 - Lx3B LINE L1 -1 6972 6919 4 892 557 158 0 0 chr3 40272068 40272150 -119327633 - Lx3B LINE L1 -260 6716 6635 4 892 1618 136 44 0 chr3 40272152 40272403 -119327380 - Lx3B LINE L1 -445 6528 6267 4 892 764 301 92 10 chr3 40272559 40272949 -119326834 - L1MC1 LINE L1 -209 6124 5703 4 892 470 217 9 0 chr3 40272949 40273064 -119326719 + (TA)n Simple_repeat Simple_repeat 1 116 0 4 892 636 91 27 0 chr3 40273080 40273190 -119326593 + (TAGA)n Simple_repeat Simple_repeat 4 116 0 4 892 8055 82 5 2 chr3 40273781 40274887 -119324896 - L1_Mus3 LINE L1 -1 6637 5529 4 892 4045 117 3 0 chr3 40274902 40275483 -119324300 + L1_Mus3 LINE L1 4958 5540 -343 4 892 241 62 0 0 chr3 40277074 40277106 -119322677 + B3 SINE B2 1 32 -184 4 892 291 271 339 0 chr3 40277814 40277932 -119321851 + B3A SINE B2 6 163 -35 4 892 895 324 68 55 chr3 40278326 40278858 -119320925 + MLT1F LTR MaLR 10 548 0 4 892 1196 101 0 0 chr3 40279343 40279491 -119320292 + B1_Mus1 SINE Alu 1 148 0 4 892 297 0 0 0 chr3 40279864 40279897 -119319886 + (TA)n Simple_repeat Simple_repeat 1 33 0 4 892 1045 229 29 0 chr3 40280025 40280230 -119319553 + B3 SINE B2 4 214 -2 4 892 188 318 159 0 chr3 40280816 40280904 -119318879 - MIRb SINE MIR -151 117 16 4 892 3432 65 0 29 chr3 40281237 40281680 -119318103 + L1Md_F2 LINE L1 6153 6582 0 4 892 214 207 17 33 chr3 40282410 40282470 -119317313 + A-rich Low_complexity Low_complexity 2 60 0 4 892 230 270 93 13 chr3 40282803 40282878 -119316905 - MLT1H LTR MaLR -149 400 320 4 892 1150 290 104 16 chr3 40283037 40283422 -119316361 - MTD LTR MaLR 0 419 1 4 892 395 171 0 62 chr3 40284862 40284943 -119314840 + Lx7 LINE L1 4751 4826 -1054 4 892 252 160 59 118 chr3 40284949 40285034 -119314749 + RLTR25B LTR ERVK 430 509 -519 4 892 620 77 10 81 chr3 40284980 40285079 -119314704 + B1_Mus2 SINE Alu 50 141 -6 4 892 504 32 0 0 chr3 40285080 40285142 -119314641 + (CAAAA)n Simple_repeat Simple_repeat 4 65 0 4 892 4706 158 107 14 chr3 40285142 40286027 -119313756 + Lx7 LINE L1 4859 5830 -50 4 892 378 0 0 0 chr3 40286027 40286069 -119313714 + (TA)n Simple_repeat Simple_repeat 2 43 0 4 892 4706 205 62 24 chr3 40286069 40286988 -119312795 + Lx7 LINE L1 5831 6781 -915 4 892 2100 195 34 34 chr3 40287022 40287516 -119312267 + RMER1C Other Other 805 1298 -44 4 892 2835 185 118 160 chr3 40287528 40288449 -119311334 + Lx7 LINE L1 6769 7651 -45 4 892 318 318 34 0 chr3 40289519 40289607 -119310176 - B1F1 SINE Alu -56 93 3 4 892 25 0 0 0 chr3 40289638 40289663 -119310120 + AT_rich Low_complexity Low_complexity 1 25 0 4 892 855 239 9 55 chr3 40289742 40289959 -119309824 + ID_B1 SINE B4 3 209 -15 4 892 396 0 0 0 chr3 40290240 40290284 -119309499 + (TG)n Simple_repeat Simple_repeat 2 45 0 4 892 989 315 60 14 chr3 40290776 40291124 -119308659 - MTEa LTR MaLR -15 364 1 4 892 794 266 159 49 chr3 40291635 40292040 -119307743 + MLT2B1 LTR ERVL 5 412 -2 4 892 350 330 196 17 chr3 40292255 40292495 -119307288 - B4A SINE B4 -7 285 3 4 892 785 212 151 11 chr3 40292937 40293123 -119306660 - B3 SINE B2 -4 212 1 4 892 1780 163 60 85 chr3 40293402 40293804 -119305979 - RMER1B Other Other -56 1010 619 4 892 946 250 34 0 chr3 40294498 40294702 -119305081 + B3 SINE B2 1 211 -5 4 892 604 158 74 16 chr3 40294949 40295071 -119304712 - MTC LTR MaLR -290 131 3 4 892 247 246 48 32 chr3 40295095 40295158 -119304625 + MIRb SINE MIR 25 88 -180 4 892 279 328 80 30 chr3 40295266 40295530 -119304253 - LTR33 LTR ERVL -204 311 35 4 892 618 302 37 9 chr3 40296192 40296409 -119303374 - MIR SINE MIR -30 232 10 4 892 1909 217 49 20 chr3 40296422 40296831 -119302952 + MTC LTR MaLR 1 421 0 4 892 23 33 0 0 chr3 40297897 40297927 -119301856 + AT_rich Low_complexity Low_complexity 1 30 0 4 892 1072 199 43 14 chr3 40297999 40298208 -119301575 + ID_B1 SINE B4 5 219 -5 4 892 277 314 17 17 chr3 40298254 40298374 -119301409 + L1MC3 LINE L1 7185 7304 -481 4 892 668 293 101 32 chr3 40298724 40299130 -119300653 + L1MC3 LINE L1 7351 7784 -1 4 892 678 259 7 7 chr3 40300160 40300308 -119299475 + RSINE1 SINE B4 1 148 -17 4 892 249 108 0 0 chr3 40300370 40300407 -119299376 + (TA)n Simple_repeat Simple_repeat 1 37 0 4 892 1627 164 148 66 chr3 40301483 40301875 -119297908 + Lx5 LINE L1 6619 7042 -8 4 892 1364 276 55 98 chr3 40302047 40302758 -119297025 - L1MA6 LINE L1 -285 6015 5336 4 892 359 337 28 56 chr3 40302833 40303012 -119296771 - B3 SINE B2 -29 187 14 4 892 700 282 89 12 chr3 40305072 40305330 -119294453 + B4 SINE B4 4 281 -11 4 892 1281 228 104 16 chr3 40305526 40305901 -119293882 - MTD LTR MaLR -11 408 1 4 892 645 310 68 25 chr3 40306269 40306547 -119293236 + B4A SINE B4 3 292 0 4 892 410 276 75 19 chr3 40307004 40307111 -119292672 + PB1D10 SINE Alu 2 114 -3 4 892 360 64 0 0 chr3 40308600 40308647 -119291136 + (CA)n Simple_repeat Simple_repeat 1 47 0 4 892 28 0 0 0 chr3 40308845 40308873 -119290910 + AT_rich Low_complexity Low_complexity 1 28 0 4 892 23 0 0 0 chr3 40309375 40309398 -119290385 + AT_rich Low_complexity Low_complexity 1 23 0 4 892 618 322 33 19 chr3 40309398 40309613 -119290170 + ID_B1 SINE B4 7 224 0 4 892 21 0 0 0 chr3 40310843 40310864 -119288919 + AT_rich Low_complexity Low_complexity 1 21 0 4 892 261 0 0 0 chr3 40311483 40311512 -119288271 + (CA)n Simple_repeat Simple_repeat 2 30 0 4 892 203 147 0 0 chr3 40311979 40312013 -119287770 + (CCCCAG)n Simple_repeat Simple_repeat 3 36 0 4 892 289 318 85 101 chr3 40313339 40313538 -119286245 + B4A SINE B4 89 284 -8 4 892 690 274 62 80 chr3 40313895 40314169 -119285614 + B4 SINE B4 24 292 0 4 892 359 43 22 0 chr3 40314456 40314502 -119285281 - ORR1A2 LTR MaLR -8 338 292 4 892 8103 93 6 6 chr3 40314502 40316042 -119283741 - L1_Mus3 LINE L1 0 6638 5097 4 892 1908 142 7 0 chr3 40316042 40316330 -119283453 - ORR1A2 LTR MaLR -37 290 1 4 892 680 267 0 0 chr3 40316656 40316791 -119282992 + B3A SINE B2 17 151 -47 4 892 216 0 0 0 chr3 40316797 40316821 -119282962 + (CA)n Simple_repeat Simple_repeat 1 24 0 4 892 690 13 0 0 chr3 40316821 40316899 -119282884 + (GA)n Simple_repeat Simple_repeat 2 80 0 4 892 583 341 44 41 chr3 40317361 40317679 -119282104 + L2 LINE L2 2754 3072 -347 4 892 441 292 65 28 chr3 40317882 40318129 -119281654 + L1M4 LINE L1 3333 3588 -2558 4 892 996 242 35 41 chr3 40318292 40318637 -119281146 - RLTR15 LTR ERVK -16 343 1 4 892 255 262 142 39 chr3 40319056 40319211 -119280572 + Lx8 LINE L1 7303 7473 0 4 892 748 276 105 21 chr3 40319358 40319643 -119280140 + MLT2B4 LTR ERVL 1 309 -247 4 892 1323 152 26 35 chr3 40319711 40319937 -119279846 + ORR1B1 LTR MaLR 1 197 -173 4 892 459 267 81 54 chr3 40319937 40320030 -119279753 + RMER17C LTR ERVK 1 86 -324 4 892 716 77 0 9 chr3 40320030 40320135 -119279648 + (TC)n Simple_repeat Simple_repeat 1 104 0 4 892 459 267 81 54 chr3 40320135 40320263 -119279520 + RMER17C LTR ERVK 87 228 -182 4 892 1089 147 19 10 chr3 40320245 40320466 -119279317 + ORR1B1 LTR MaLR 152 394 0 4 892 737 196 0 14 chr3 40321046 40321186 -119278597 + B1_Mur3 SINE Alu 11 148 -1 4 892 506 272 0 0 chr3 40321372 40321486 -119278297 + MLT1A0 LTR MaLR 251 364 -1 4 892 564 167 9 0 chr3 40321683 40321792 -119277991 - B1_Mur2 SINE Alu 0 120 7 4 892 239 327 86 37 chr3 40321797 40321959 -119277824 + ORR1E LTR MaLR 4 173 -186 4 892 244 323 147 57 chr3 40322361 40322640 -119277143 + LTR79 LTR ERVL 151 454 -73 4 892 443 18 18 0 chr3 40322656 40322712 -119277071 + (TTG)n Simple_repeat Simple_repeat 2 58 0 4 892 431 204 36 18 chr3 40323578 40323688 -119276095 + MER121 Unknown Unknown 99 210 -202 4 892 3141 43 52 0 chr3 40324335 40324704 -119275079 + RLTR10 LTR ERVK 1 388 -2 4 892 29 0 0 0 chr3 40326748 40326777 -119273006 + AT_rich Low_complexity Low_complexity 1 29 0 4 892 217 348 33 0 chr3 40327543 40327635 -119272148 - MIRb SINE MIR -94 174 80 4 892 1069 58 13 0 chr3 40328068 40328222 -119271561 + (TAGA)n Simple_repeat Simple_repeat 2 157 0 4 892 1180 95 0 7 chr3 40328236 40328384 -119271399 - B1_Mus2 SINE Alu 0 147 1 4 892 702 250 0 0 chr3 40329119 40329251 -119270532 - B1_Mur1 SINE Alu -3 146 15 5 892 26 0 0 0 chr3 40329341 40329367 -119270416 + AT_rich Low_complexity Low_complexity 1 26 0 5 892 315 0 0 0 chr3 40329858 40329893 -119269890 + (TC)n Simple_repeat Simple_repeat 2 36 0 5 892 369 0 0 0 chr3 40329893 40329933 -119269850 + (TG)n Simple_repeat Simple_repeat 2 42 0 5 892 805 268 0 29 chr3 40330666 40330870 -119268913 - B3A SINE B2 0 198 1 5 892 1005 115 214 0 chr3 40331144 40331326 -119268457 - URR1A DNA MER1_type 0 226 6 5 892 983 214 20 20 chr3 40332030 40332226 -119267557 - B3A SINE B2 -2 196 1 5 892 360 113 0 0 chr3 40332447 40332500 -119267283 + L1VL2 LINE L1 135 187 -6148 5 892 12123 88 44 10 chr3 40332500 40334138 -119265645 + L1VL2 LINE L1 300 2008 -1607 5 892 459 0 0 0 chr3 40334138 40334189 -119265594 + (TA)n Simple_repeat Simple_repeat 2 52 0 5 892 12123 86 21 9 chr3 40334189 40334888 -119264895 + L1VL2 LINE L1 2009 2713 -902 5 892 8689 54 0 1 chr3 40334960 40336024 -119263759 + L1Md_F3 LINE L1 4524 5586 -297 5 892 8622 22 4 3 chr3 40336024 40337019 -119262764 + L1Md_F3 LINE L1 5587 6582 -2 5 892 1019 237 5 14 chr3 40337368 40337586 -119262197 + B3 SINE B2 1 216 0 5 892 379 293 48 8 chr3 40337611 40337735 -119262048 + RSINE1 SINE B4 7 135 -30 5 892 740 311 25 0 chr3 40337801 40338036 -119261747 + B4A SINE B4 2 242 -50 5 892 393 75 0 0 chr3 40339706 40339759 -119260024 + (TA)n Simple_repeat Simple_repeat 1 53 0 5 892 563 0 0 15 chr3 40339759 40339826 -119259957 + (GA)n Simple_repeat Simple_repeat 2 68 0 5 892 561 294 65 6 chr3 40341382 40341550 -119258233 + B3A SINE B2 1 178 -20 5 892 259 250 62 0 chr3 40341618 40341682 -119258101 + PB1D9 SINE Alu 9 76 -44 5 892 201 39 0 0 chr3 40342142 40342168 -119257615 + (TG)n Simple_repeat Simple_repeat 2 27 0 5 892 290 257 0 0 chr3 40342727 40342797 -119256986 + B3A SINE B2 27 96 -102 5 892 274 278 41 10 chr3 40343124 40343222 -119256561 + RMER15 LTR ERVL 432 532 -43 5 892 432 51 0 0 chr3 40344348 40344407 -119255376 + (TG)n Simple_repeat Simple_repeat 2 60 0 5 892 896 283 40 109 chr3 40344815 40345220 -119254563 + MTE2a LTR MaLR 1 377 -2 5 892 873 262 19 10 chr3 40346989 40347197 -119252586 - B3 SINE B2 0 216 7 5 892 944 116 13 27 chr3 40347302 40347452 -119252331 + B1_Mus1 SINE Alu 1 148 0 5 892 1164 214 0 23 chr3 40348690 40348910 -119250873 - B3 SINE B2 0 216 2 5 892 532 310 145 16 chr3 40348966 40349215 -119250568 + B4A SINE B4 9 289 -3 5 892 260 244 12 25 chr3 40349382 40349462 -119250321 + MLT1A1 LTR MaLR 318 396 -12 5 892 1230 103 0 0 chr3 40351107 40351391 -119248392 + (CA)n Simple_repeat Simple_repeat 1 284 0 5 892 813 273 18 5 chr3 40351450 40351667 -119248116 + ID_B1 SINE B4 2 221 -3 5 892 1019 198 50 0 chr3 40351789 40351991 -119247792 - B3 SINE B2 -1 215 4 5 892 231 297 181 2 chr3 40352190 40352328 -119247455 + MIRc SINE MIR 52 215 -53 5 892 257 367 0 0 chr3 40353095 40353204 -119246579 + G-rich Low_complexity Low_complexity 1 109 0 5 892 233 302 0 24 chr3 40353254 40353352 -119246431 + B1F SINE Alu 12 108 -42 5 892 349 281 0 0 chr3 40353867 40353949 -119245834 + Lx8 LINE L1 6721 6802 -671 5 892 423 256 105 111 chr3 40354019 40354362 -119245421 - RLTR15 LTR ERVK -16 343 3 5 892 1316 224 62 31 chr3 40354360 40354714 -119245069 + ORR1D2 LTR MaLR 1 365 -5 5 892 962 245 182 28 chr3 40354723 40355019 -119244764 + Lx8 LINE L1 6879 7236 -237 5 892 237 33 0 0 chr3 40355019 40355049 -119244734 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 5 892 962 245 182 28 chr3 40355049 40355143 -119244640 + Lx8 LINE L1 7237 7329 -144 5 892 2673 130 63 21 chr3 40355158 40355637 -119244146 + RLTR17 LTR ERVK 1 499 -193 5 892 348 213 53 0 chr3 40355656 40355731 -119244052 + RLTR31_Mm LTR ERVK 483 561 0 5 892 318 234 135 47 chr3 40357008 40357156 -119242627 - Lx9 LINE L1 -204 7440 7280 5 892 883 257 14 5 chr3 40358093 40358300 -119241483 + B4 SINE B4 2 210 -82 5 892 268 29 0 0 chr3 40358762 40358797 -119240986 + U2 snRNA snRNA 1 35 -153 5 892 4825 160 17 42 chr3 40358958 40359889 -119239894 + RMER13B LTR ERVK 1 908 0 5 892 1696 173 93 33 chr3 40360737 40361156 -119238627 + RLTR40 LTR ERVK 26 469 -348 5 892 2338 145 114 13 chr3 40361133 40361607 -119238176 + RLTR11A LTR ERVK 7 528 0 5 892 1461 204 101 0 chr3 40361607 40361799 -119237984 + RLTR40 LTR ERVK 435 643 -174 5 892 195 42 0 0 chr3 40361799 40361823 -119237960 + (CAGA)n Simple_repeat Simple_repeat 3 26 0 5 892 1461 204 101 0 chr3 40361823 40361978 -119237805 + RLTR40 LTR ERVK 644 816 -1 5 892 186 43 0 0 chr3 40362139 40362162 -119237621 + (CA)n Simple_repeat Simple_repeat 1 23 0 5 892 229 222 19 0 chr3 40362749 40362803 -119236980 + (CATATA)n Simple_repeat Simple_repeat 6 60 0 5 892 204 193 24 24 chr3 40362830 40362915 -119236868 + (CATATA)n Simple_repeat Simple_repeat 6 90 0 5 892 325 267 6 6 chr3 40362993 40363159 -119236624 + (CA)n Simple_repeat Simple_repeat 1 166 0 5 892 229 247 50 38 chr3 40363490 40363570 -119236213 + ID4 SINE ID 3 83 0 5 892 746 270 22 9 chr3 40364195 40364423 -119235360 + B4 SINE B4 2 232 -60 5 892 345 314 55 48 chr3 40364430 40364727 -119235056 + L1M5 LINE L1 4407 4708 -1438 5 892 812 137 0 7 chr3 40364884 40365024 -119234759 + (TTCTCC)n Simple_repeat Simple_repeat 4 142 0 5 892 861 215 20 0 chr3 40365024 40365224 -119234559 + RMER10B LTR ERVL 194 397 -1 5 892 900 94 0 0 chr3 40365438 40365566 -119234217 + (GGAA)n Simple_repeat Simple_repeat 3 130 0 5 892 4472 112 1 11 chr3 40365589 40366247 -119233536 - Lx2B LINE L1 -124 6876 6225 5 892 744 318 57 49 chr3 40366578 40366944 -119232839 + MTE2a LTR MaLR 1 374 -45 5 892 250 295 24 16 chr3 40367096 40367149 -119232634 + polypurine Low_complexity Low_complexity 2 53 0 5 892 1316 214 58 91 chr3 40367149 40367580 -119232203 + MTD LTR MaLR 2 418 -1 5 892 250 295 24 16 chr3 40367580 40367650 -119232133 + polypurine Low_complexity Low_complexity 54 125 0 5 892 1696 179 70 62 chr3 40369779 40369971 -119229812 - ORR1C1 LTR MaLR -1 377 165 5 892 540 0 0 0 chr3 40369971 40370031 -119229752 + (GA)n Simple_repeat Simple_repeat 1 60 0 5 111 1696 179 70 62 chr3 40370031 40370212 -119229571 - ORR1C1 LTR MaLR -214 164 2 5 893 305 256 0 22 chr3 40370366 40370458 -119229325 - L1MB4 LINE L1 -27 6153 6064 5 893 466 221 28 166 chr3 40370586 40370803 -119228980 + B3A SINE B2 9 195 0 5 893 1153 236 67 59 chr3 40370882 40371256 -119228527 + MTE2b LTR MaLR 1 377 -2 5 893 309 298 25 119 chr3 40371442 40371602 -119228181 - RSINE1 SINE B4 0 165 21 5 893 310 350 73 84 chr3 40371747 40372034 -119227749 + L4 LINE RTE 1187 1470 -559 5 893 428 301 11 6 chr3 40372296 40372473 -119227310 + L1M2 LINE L1 2865 3042 -3101 5 893 1422 47 0 0 chr3 40372544 40372846 -119226937 + (TTGG)n Simple_repeat Simple_repeat 1 302 0 5 893 3391 287 84 72 chr3 40372970 40373578 -119226205 + L1M2 LINE L1 3029 3607 -2536 5 893 1206 93 49 11 chr3 40373578 40373763 -119226020 + B2_Mm2 SINE B2 1 192 -3 5 893 3391 287 84 72 chr3 40373763 40374936 -119224847 + L1M2 LINE L1 3608 4806 -1337 5 893 495 0 0 0 chr3 40374936 40374991 -119224792 + (CAGAA)n Simple_repeat Simple_repeat 5 59 0 5 893 3391 298 86 63 chr3 40374991 40375557 -119224226 + L1M2 LINE L1 4771 5393 -487 5 893 2031 95 7 7 chr3 40375557 40375853 -119223930 + L1_Mus3 LINE L1 6343 6638 0 5 893 2557 317 91 48 chr3 40375853 40375951 -119223832 + L1M2 LINE L1 5394 5496 -384 5 893 535 261 37 16 chr3 40375971 40376158 -119223625 - B3A SINE B2 -7 191 1 5 893 1060 202 35 0 chr3 40376301 40376504 -119223279 + B3 SINE B2 1 210 -6 5 893 1658 211 81 120 chr3 40376943 40377181 -119222602 - RLTR18B LTR ERVK -1 511 271 5 893 1105 68 14 0 chr3 40377181 40377327 -119222456 + B1_Mus1 SINE Alu 1 148 0 5 893 1658 211 81 120 chr3 40377327 40377369 -119222414 - RLTR18B LTR ERVK -242 270 249 5 893 7621 28 1 0 chr3 40377369 40378240 -119221543 + L1Md_F2 LINE L1 5709 6580 -2 5 893 1658 211 81 120 chr3 40378240 40378490 -119221293 - RLTR18B LTR ERVK -264 248 1 5 893 285 340 29 0 chr3 40378493 40378596 -119221187 - MER34 LTR ERV1 -429 113 8 5 893 180 0 0 0 chr3 40380174 40380194 -119219589 + (CA)n Simple_repeat Simple_repeat 2 21 0 5 893 214 233 0 0 chr3 40380499 40380542 -119219241 + (CGCTG)n Simple_repeat Simple_repeat 2 44 0 5 893 2302 98 3 36 chr3 40380856 40381193 -119218590 - ORR1A2 LTR MaLR -1 326 1 5 893 21 36 0 0 chr3 40381466 40381494 -119218289 + AT_rich Low_complexity Low_complexity 1 28 0 5 893 897 200 40 0 chr3 40381528 40381728 -119218055 + B3 SINE B2 9 216 0 5 893 673 256 12 0 chr3 40383023 40383183 -119216600 + B3A SINE B2 1 162 -36 5 893 1087 230 5 5 chr3 40383378 40383588 -119216195 + B3 SINE B2 1 210 -6 5 893 363 272 40 99 chr3 40383989 40384141 -119215642 + ID_B1 SINE B4 5 167 -125 5 893 192 158 0 0 chr3 40384173 40384211 -119215572 + GA-rich Low_complexity Low_complexity 3 40 0 5 893 2520 182 13 36 chr3 40384231 40384760 -119215023 + RLTR12B LTR ERVK 1 517 -11 5 893 296 268 0 35 chr3 40384771 40384856 -119214927 + GA-rich Low_complexity Low_complexity 6 87 0 5 893 888 236 120 21 chr3 40385184 40385549 -119214234 + RMER16 LTR ERVK 1 533 0 5 893 21 36 0 0 chr3 40385745 40385773 -119214010 + AT_rich Low_complexity Low_complexity 1 28 0 5 893 793 26 259 9 chr3 40385892 40386008 -119213775 + B1_Mm SINE Alu 2 146 -1 5 893 291 224 17 0 chr3 40386199 40386257 -119213526 - B3 SINE B2 -94 122 64 5 893 1677 135 87 13 chr3 40386289 40386589 -119213194 - ORR1B2 LTR MaLR -43 324 3 5 893 929 211 11 0 chr3 40386816 40386996 -119212787 + B3A SINE B2 2 183 -15 5 893 32 26 0 0 chr3 40387014 40387053 -119212730 + AT_rich Low_complexity Low_complexity 1 39 0 5 893 415 284 244 24 chr3 40387087 40387300 -119212483 - MTE-int LTR MaLR -611 969 710 5 893 1256 176 156 15 chr3 40387326 40387654 -119212129 + ORR1C2 LTR MaLR 11 384 0 5 893 427 316 45 41 chr3 40387675 40387896 -119211887 - MTE-int LTR MaLR -896 684 463 5 893 401 300 49 12 chr3 40388036 40388198 -119211585 - MTEa LTR MaLR -30 349 182 5 893 219 320 66 28 chr3 40388219 40388325 -119211458 + MIRb SINE MIR 125 234 -34 5 893 283 325 116 8 chr3 40388374 40388495 -119211288 + MIR SINE MIR 10 143 -119 6 893 1766 126 87 23 chr3 40389604 40389913 -119209870 + ORR1A4 LTR MaLR 1 329 0 6 893 201 121 65 65 chr3 40389923 40389985 -119209798 + T-rich Low_complexity Low_complexity 5 66 0 6 893 316 220 85 32 chr3 40390339 40390433 -119209350 - PB1D10 SINE Alu 0 117 19 6 893 733 212 7 0 chr3 40390608 40390754 -119209029 + B3A SINE B2 1 147 -51 6 893 252 0 0 0 chr3 40390773 40390801 -119208982 + (CA)n Simple_repeat Simple_repeat 1 28 0 6 893 721 244 30 0 chr3 40390822 40390990 -119208793 - B3 SINE B2 -42 174 2 6 893 297 315 0 11 chr3 40390990 40391081 -119208702 - MER34A LTR ERV1 -481 90 1 6 893 32 0 0 0 chr3 40391087 40391119 -119208664 + AT_rich Low_complexity Low_complexity 1 32 0 6 893 1187 278 33 86 chr3 40391403 40391950 -119207833 - RMER5 LTR ERV1 -16 518 1 6 893 279 0 0 0 chr3 40392273 40392304 -119207479 + (GA)n Simple_repeat Simple_repeat 2 32 0 6 893 784 270 29 18 chr3 40392662 40392941 -119206842 + B4A SINE B4 5 286 -6 6 893 2935 70 39 0 chr3 40393085 40393470 -119206313 - MTB LTR MaLR 0 400 1 6 893 1652 179 62 17 chr3 40393923 40394276 -119205507 - ORR1D1 LTR MaLR 0 374 6 6 893 1331 161 0 0 chr3 40394519 40394724 -119205059 + B3 SINE B2 5 209 -7 6 893 1249 182 87 10 chr3 40394779 40395068 -119204715 - ORR1C1 LTR MaLR -48 330 20 6 893 421 298 42 26 chr3 40395070 40395263 -119204520 - L1M3 LINE L1 -393 5775 5580 6 893 429 167 0 0 chr3 40395332 40395410 -119204373 + (TATATG)n Simple_repeat Simple_repeat 4 81 0 6 893 369 138 0 0 chr3 40395431 40395489 -119204294 + B2_Mm2 SINE B2 34 91 -104 6 893 189 0 0 0 chr3 40395516 40395537 -119204246 + (TAAA)n Simple_repeat Simple_repeat 1 21 0 6 893 384 40 0 0 chr3 40395561 40395611 -119204172 + (TAAA)n Simple_repeat Simple_repeat 1 50 0 6 893 4394 149 85 51 chr3 40395623 40396480 -119203303 + Lx5 LINE L1 6165 7050 0 6 893 349 244 109 15 chr3 40396487 40396624 -119203159 - L1P5 LINE L1 -565 5591 5442 6 893 328 310 49 82 chr3 40396730 40396913 -119202870 + B3A SINE B2 6 182 -16 6 893 1447 268 55 76 chr3 40396982 40397351 -119202432 + L1M3 LINE L1 4627 5005 -1135 6 893 467 265 0 25 chr3 40397351 40397471 -119202312 + PB1D10 SINE Alu 1 117 0 6 893 1447 253 36 90 chr3 40397471 40397920 -119201863 + L1M3 LINE L1 5006 5427 -756 6 893 189 0 0 0 chr3 40398110 40398131 -119201652 + (TTTG)n Simple_repeat Simple_repeat 3 23 0 6 893 361 243 14 0 chr3 40398137 40398207 -119201576 - ID4 SINE ID -10 73 3 6 893 3187 238 96 7 chr3 40398217 40398948 -119200835 - RMER1C Other Other -1 1341 546 6 893 315 0 0 0 chr3 40399005 40399040 -119200743 + (TTG)n Simple_repeat Simple_repeat 2 36 0 6 893 351 0 0 0 chr3 40399047 40399086 -119200697 + (TG)n Simple_repeat Simple_repeat 1 39 0 6 893 586 280 70 23 chr3 40399110 40399282 -119200501 - B3A SINE B2 -16 182 3 6 893 1663 117 65 44 chr3 40399478 40399799 -119199984 + ORR1B1 LTR MaLR 33 360 -34 6 893 849 66 138 7 chr3 40399832 40399970 -119199813 + L1_Mus3 LINE L1 6476 6631 -7 6 893 201 39 0 0 chr3 40400331 40400357 -119199426 + (TG)n Simple_repeat Simple_repeat 1 26 0 6 893 1635 188 32 15 chr3 40400482 40400822 -119198961 + MTC LTR MaLR 3 348 -73 6 893 1711 192 24 123 chr3 40400829 40401293 -119198490 + RMER1C Other Other 925 1342 0 6 893 600 147 9 0 chr3 40402563 40402672 -119197111 + ORR1C1 LTR MaLR 1 110 -268 6 893 232 269 38 13 chr3 40402748 40402827 -119196956 + L1M5 LINE L1 4891 4971 -1175 6 893 943 119 0 28 chr3 40402858 40403039 -119196744 + (GAAA)n Simple_repeat Simple_repeat 3 178 0 6 893 324 0 0 0 chr3 40403039 40403075 -119196708 + (GA)n Simple_repeat Simple_repeat 1 36 0 6 893 344 243 152 13 chr3 40403086 40403198 -119196585 + ID_B1 SINE B4 80 201 -23 6 893 845 140 52 0 chr3 40405580 40405716 -119194067 + B1_Mur1 SINE Alu 3 145 -4 6 893 961 230 33 9 chr3 40406318 40406529 -119193254 + B3 SINE B2 1 216 0 6 893 313 265 24 0 chr3 40406854 40406937 -119192846 - LTR37B LTR ERV1 -185 283 199 6 893 362 296 25 25 chr3 40407866 40407984 -119191799 + B4 SINE B4 124 241 -51 6 893 300 315 0 9 chr3 40407999 40408106 -119191677 + (CA)n Simple_repeat Simple_repeat 1 107 0 6 893 423 0 0 0 chr3 40408106 40408153 -119191630 + (TG)n Simple_repeat Simple_repeat 1 47 0 6 893 2679 280 45 26 chr3 40409379 40410378 -119189405 - Lx8 LINE L1 -1554 5919 4869 6 893 189 77 0 0 chr3 40410558 40410584 -119189199 - L2b LINE L2 -22 3353 3328 6 893 708 273 76 48 chr3 40410888 40411138 -119188645 + B4 SINE B4 1 257 -35 6 893 219 36 0 0 chr3 40411140 40411168 -119188615 + (CA)n Simple_repeat Simple_repeat 1 28 0 6 893 630 60 0 0 chr3 40411168 40411250 -119188533 + (GA)n Simple_repeat Simple_repeat 2 84 0 6 893 479 273 16 0 chr3 40411625 40411746 -119188037 - RSINE1 SINE B4 -20 145 23 6 893 241 270 99 50 chr3 40412377 40412498 -119187285 - MIRc SINE MIR -68 200 74 6 893 301 107 0 82 chr3 40412562 40412623 -119187160 - HAL1-3A_ME LINE L1 -828 2030 1975 6 893 1140 127 0 0 chr3 40412631 40412901 -119186882 + (TG)n Simple_repeat Simple_repeat 1 270 0 6 893 391 312 121 30 chr3 40412919 40413183 -119186600 - B4A SINE B4 0 292 5 6 893 693 259 215 6 chr3 40413187 40413517 -119186266 - MTD LTR MaLR -16 403 5 6 893 500 144 0 43 chr3 40413531 40413625 -119186158 - PB1D10 SINE Alu -1 116 27 6 893 769 242 53 47 chr3 40414092 40414413 -119185370 - RLTR15 LTR ERVK -27 332 10 6 893 378 0 0 0 chr3 40414691 40414733 -119185050 + (TG)n Simple_repeat Simple_repeat 1 42 0 6 893 540 0 0 0 chr3 40414902 40414962 -119184821 + (GA)n Simple_repeat Simple_repeat 1 60 0 6 893 495 282 5 155 chr3 40416557 40416763 -119183020 + B4A SINE B4 1 175 -117 6 893 577 236 102 36 chr3 40416941 40417108 -119182675 + B3A SINE B2 5 182 -16 6 893 396 265 24 0 chr3 40417649 40417732 -119182051 - PB1D10 SINE Alu -22 95 11 6 893 414 0 0 0 chr3 40417739 40417785 -119181998 + (TG)n Simple_repeat Simple_repeat 2 47 0 6 893 193 75 0 48 chr3 40418761 40418803 -119180980 + (CCCCCA)n Simple_repeat Simple_repeat 2 41 0 6 893 261 176 206 0 chr3 40418869 40418937 -119180846 - PB1 SINE Alu -1 126 45 6 893 450 236 71 0 chr3 40419779 40419906 -119179877 + B1F SINE Alu 14 149 0 6 893 334 289 72 0 chr3 40421147 40421244 -119178539 + ID_B1 SINE B4 95 198 -26 6 893 225 145 35 52 chr3 40421244 40421302 -119178481 + G-rich Low_complexity Low_complexity 3 59 0 6 893 717 88 0 0 chr3 40422691 40422793 -119176990 + (TTTC)n Simple_repeat Simple_repeat 3 104 0 6 893 213 281 0 17 chr3 40423048 40423106 -119176677 - B4 SINE B4 -234 58 2 6 893 29 0 0 0 chr3 40423611 40423640 -119176143 + AT_rich Low_complexity Low_complexity 1 29 0 6 893 1477 221 65 34 chr3 40423762 40424146 -119175637 - MTD LTR MaLR -23 396 1 6 893 512 200 95 8 chr3 40424420 40424529 -119175254 + B3 SINE B2 79 194 -22 6 893 189 0 0 0 chr3 40424529 40424550 -119175233 + (TA)n Simple_repeat Simple_repeat 1 21 0 6 893 512 200 95 8 chr3 40424550 40424566 -119175217 + B3 SINE B2 195 215 -1 6 893 339 178 0 0 chr3 40425251 40425352 -119174431 + T-rich Low_complexity Low_complexity 1 101 0 6 893 267 189 28 42 chr3 40425614 40425686 -119174097 - ID4 SINE ID 0 83 13 6 893 303 235 94 38 chr3 40426029 40426135 -119173648 - PB1D7 SINE Alu -6 114 3 6 893 272 358 58 19 chr3 40426323 40426477 -119173306 + LTR16A LTR ERVL 201 360 -91 6 893 332 318 117 31 chr3 40426902 40427173 -119172610 - MLT1E2 LTR MaLR -114 566 316 6 893 522 259 41 53 chr3 40427328 40427499 -119172284 - B4 SINE B4 -122 170 2 6 893 284 364 39 7 chr3 40427883 40428064 -119171719 - MLT1C LTR MaLR -24 443 256 6 893 244 305 103 65 chr3 40428477 40428534 -119171249 - MLT1C LTR MaLR -155 235 182 6 893 940 188 43 43 chr3 40428534 40428745 -119171038 - B3 SINE B2 -5 211 1 6 893 296 291 101 1 chr3 40428745 40428905 -119170878 - MLT1C LTR MaLR -285 182 9 6 893 1207 283 27 8 chr3 40428953 40429324 -119170459 + MTEb LTR MaLR 2 379 0 6 893 31 58 0 0 chr3 40429399 40429451 -119170332 + AT_rich Low_complexity Low_complexity 1 52 0 6 893 180 0 0 0 chr3 40429880 40429900 -119169883 + (C)n Simple_repeat Simple_repeat 1 20 0 6 893 490 215 22 22 chr3 40430123 40430261 -119169522 - B1_Mur1 SINE Alu -2 147 10 6 893 240 59 0 0 chr3 40433669 40433703 -119166080 + (T)n Simple_repeat Simple_repeat 1 34 0 6 893 27 0 0 0 chr3 40434866 40434893 -119164890 + AT_rich Low_complexity Low_complexity 1 27 0 6 893 24 0 0 0 chr3 40435434 40435458 -119164325 + AT_rich Low_complexity Low_complexity 1 24 0 6 893 282 125 0 0 chr3 40435510 40435558 -119164225 + (TC)n Simple_repeat Simple_repeat 1 48 0 6 893 255 189 0 0 chr3 40435781 40435834 -119163949 + (CATATA)n Simple_repeat Simple_repeat 4 56 0 6 893 1041 183 69 0 chr3 40436378 40436580 -119163203 + B3 SINE B2 1 216 0 6 893 728 272 50 0 chr3 40436805 40437007 -119162776 - ID_B1 SINE B4 -6 218 7 6 893 995 216 29 19 chr3 40437187 40437395 -119162388 + B3 SINE B2 2 211 -5 6 893 384 282 0 12 chr3 40437455 40437541 -119162242 + B1_Mur3 SINE Alu 1 85 -64 6 893 198 0 0 0 chr3 40437547 40437569 -119162214 + (TGG)n Simple_repeat Simple_repeat 2 23 0 6 893 819 128 76 6 chr3 40437569 40437726 -119162057 + B2_Mm2 SINE B2 11 178 -17 6 893 351 0 0 0 chr3 40437726 40437765 -119162018 + (GA)n Simple_repeat Simple_repeat 1 39 0 7 893 309 159 95 0 chr3 40437772 40437835 -119161948 + B1_Mur1 SINE Alu 76 144 -5 7 893 949 284 91 79 chr3 40438187 40438683 -119161100 + MER21B LTR ERV1 321 822 -41 7 893 619 346 48 26 chr3 40438744 40439017 -119160766 - Tigger7 DNA MER2_type -2191 300 22 7 893 207 0 0 0 chr3 40440027 40440050 -119159733 + (TGGGGG)n Simple_repeat Simple_repeat 3 25 0 7 893 640 267 15 55 chr3 40440161 40440363 -119159420 - B3A SINE B2 -4 194 1 7 893 262 179 303 40 chr3 40440974 40441073 -119158710 - MTD LTR MaLR -20 399 275 7 893 298 243 0 0 chr3 40441907 40441981 -119157802 + (TG)n Simple_repeat Simple_repeat 1 74 0 7 893 517 301 38 19 chr3 40441985 40442144 -119157639 - RSINE1 SINE B4 -2 163 2 7 893 204 146 53 35 chr3 40442455 40442512 -119157271 + T-rich Low_complexity Low_complexity 5 62 0 7 893 702 130 23 0 chr3 40442876 40443007 -119156776 + CT-rich Low_complexity Low_complexity 2 135 0 7 893 823 186 28 0 chr3 40443530 40443675 -119156108 + B1_Mur3 SINE Alu 1 149 0 7 893 246 268 13 78 chr3 40443692 40443769 -119156014 + B3 SINE B2 6 77 -139 7 893 306 0 0 0 chr3 40443772 40443806 -119155977 + (CA)n Simple_repeat Simple_repeat 2 35 0 7 893 882 262 146 16 chr3 40443896 40444218 -119155565 + Lx8 LINE L1 7110 7473 0 7 893 366 53 105 0 chr3 40444382 40444439 -119155344 + ORR1B1-int LTR MaLR 560 622 -887 7 893 633 179 16 47 chr3 40444448 40444577 -119155206 + B1_Mus2 SINE Alu 4 128 -19 7 893 3675 111 109 1 chr3 40444588 40445237 -119154546 + ORR1B1-int LTR MaLR 791 1509 0 7 893 640 132 243 0 chr3 40445237 40445389 -119154394 + ORR1B1 LTR MaLR 1 189 -205 7 893 571 133 210 0 chr3 40445713 40445894 -119153889 + ORR1B1 LTR MaLR 176 394 0 7 893 1221 259 73 0 chr3 40446181 40446482 -119153301 - MTE2b LTR MaLR -5 374 52 7 893 278 222 16 0 chr3 40446524 40446578 -119153205 - MTE2b LTR MaLR -292 87 33 7 893 1148 239 38 54 chr3 40446578 40446892 -119152891 + ORR1E LTR MaLR 1 309 -50 7 893 530 299 78 14 chr3 40447761 40448043 -119151740 - L1MD3 LINE L1 -13 7982 7683 7 893 641 297 0 13 chr3 40448293 40448450 -119151333 - RSINE1 SINE B4 -1 164 10 7 893 981 180 117 24 chr3 40455736 40455941 -119143842 + URR1B DNA MER1_type 2 225 0 7 893 390 309 8 8 chr3 40456565 40456689 -119143094 - B4A SINE B4 0 292 169 7 893 472 254 174 14 chr3 40456715 40456927 -119142856 - RMER15 LTR ERVL -35 540 295 7 893 662 146 106 0 chr3 40457260 40457383 -119142400 - B1F SINE Alu 0 149 14 7 893 350 315 0 61 chr3 40459060 40459192 -119140591 + B4A SINE B4 169 292 0 7 893 1513 259 96 68 chr3 40459295 40459891 -119139892 + Ricksha_0 DNA MuDR 380 994 -739 7 893 218 32 0 31 chr3 40459891 40459923 -119139860 + (TG)n Simple_repeat Simple_repeat 2 32 0 7 893 1513 262 83 62 chr3 40459923 40460065 -119139718 + Ricksha_0 DNA MuDR 994 1130 -596 7 893 391 242 0 39 chr3 40460080 40460183 -119139600 - PB1D10 SINE Alu -18 99 1 7 893 418 246 166 7 chr3 40460274 40460413 -119139370 + Ricksha_0 DNA MuDR 1311 1471 -262 7 893 1390 168 83 48 chr3 40460765 40461102 -119138681 - MT2B LTR ERVL 0 601 253 7 893 6634 159 44 7 chr3 40461110 40462185 -119137598 - MERVL_2A-int LTR ERVL -1044 4717 3603 7 893 1002 198 33 18 chr3 40462185 40462424 -119137359 - MTC-int LTR MaLR -1315 265 2 7 893 1340 177 173 24 chr3 40462428 40462769 -119137014 - MTC LTR MaLR -5 416 25 7 893 285 321 37 19 chr3 40463317 40463425 -119136358 - PB1D10 SINE Alu -5 112 3 7 893 204 274 0 0 chr3 40463809 40463860 -119135923 + (TG)n Simple_repeat Simple_repeat 2 52 0 7 893 342 0 0 0 chr3 40463866 40463904 -119135879 + (TC)n Simple_repeat Simple_repeat 2 39 0 7 893 711 149 0 0 chr3 40463904 40464025 -119135758 + (TA)n Simple_repeat Simple_repeat 1 121 0 7 893 413 288 173 58 chr3 40464070 40464313 -119135470 + B4A SINE B4 2 272 -20 7 893 571 212 98 0 chr3 40464456 40464588 -119135195 - B1F SINE Alu -4 145 1 7 893 21 36 0 0 chr3 40464639 40464667 -119135116 + AT_rich Low_complexity Low_complexity 1 28 0 7 893 348 301 155 58 chr3 40465548 40465586 -119134197 + B4A SINE B4 45 82 -210 7 893 276 30 0 0 chr3 40465586 40465619 -119134164 + (TG)n Simple_repeat Simple_repeat 2 34 0 7 893 348 301 155 58 chr3 40465619 40465806 -119133977 + B4A SINE B4 83 291 -1 7 893 473 286 48 0 chr3 40466268 40466415 -119133368 - LTR40a LTR ERVL -351 168 15 7 893 2029 116 75 0 chr3 40466764 40467110 -119132673 - ORR1B1 LTR MaLR -3 391 20 7 893 589 317 73 57 chr3 40467210 40467564 -119132219 + RMER5 LTR ERV1 175 534 0 7 893 548 143 79 5 chr3 40468594 40468706 -119131077 + B1_Mur2 SINE Alu 2 144 -5 7 893 358 256 67 0 chr3 40468816 40468906 -119130877 - B1_Mur2 SINE Alu -53 96 1 7 893 2624 124 21 3 chr3 40468954 40469341 -119130442 - ORR1B1 LTR MaLR 0 394 1 7 893 309 213 20 36 chr3 40469472 40469573 -119130210 - MTEb LTR MaLR -14 365 246 7 893 342 98 0 0 chr3 40469675 40469726 -119130057 + (GA)n Simple_repeat Simple_repeat 2 52 0 7 893 1988 334 124 43 chr3 40469885 40471295 -119128488 - MTE-int LTR MaLR -46 1534 10 7 893 958 221 164 13 chr3 40471435 40471733 -119128050 - Lx8 LINE L1 -153 7320 6978 7 893 210 139 0 0 chr3 40471842 40471878 -119127905 + PB1D10 SINE Alu 33 68 -49 7 893 419 35 18 0 chr3 40472692 40472749 -119127034 + (GGGA)n Simple_repeat Simple_repeat 2 59 0 7 893 207 0 0 0 chr3 40473549 40473572 -119126211 + (CA)n Simple_repeat Simple_repeat 1 23 0 7 893 500 231 37 0 chr3 40473687 40473795 -119125988 - RSINE1 SINE B4 -38 127 16 7 893 440 251 80 90 chr3 40474299 40474588 -119125195 - MTEb LTR MaLR 0 379 94 7 893 432 97 0 0 chr3 40474892 40474954 -119124829 + (TA)n Simple_repeat Simple_repeat 2 63 0 7 893 473 234 21 0 chr3 40475275 40475369 -119124414 - B1_Mur2 SINE Alu -9 140 45 7 893 639 175 0 0 chr3 40476000 40476120 -119123663 + (CATA)n Simple_repeat Simple_repeat 4 123 0 7 893 1168 62 7 0 chr3 40476302 40476448 -119123335 + B1_Mus1 SINE Alu 2 148 0 7 893 1295 28 23 5 chr3 40476872 40477090 -119122693 + (CTATG)n Simple_repeat Simple_repeat 1 221 0 7 893 22 70 0 0 chr3 40478009 40478052 -119121731 + AT_rich Low_complexity Low_complexity 1 43 0 7 893 476 231 94 0 chr3 40479491 40479608 -119120175 + RSINE1 SINE B4 3 130 -35 7 893 333 47 0 0 chr3 40479620 40479663 -119120120 + (CA)n Simple_repeat Simple_repeat 2 44 0 7 893 180 161 48 0 chr3 40480019 40480081 -119119702 + G-rich Low_complexity Low_complexity 3 67 0 7 893 303 175 0 0 chr3 40480449 40480506 -119119277 + T-rich Low_complexity Low_complexity 1 57 0 7 893 752 65 152 8 chr3 40480506 40480631 -119119152 - RMER16 LTR ERVK -83 450 308 7 893 929 198 114 5 chr3 40480984 40481177 -119118606 + B3 SINE B2 2 215 -1 7 893 383 309 119 9 chr3 40481212 40481431 -119118352 - L1MB7 LINE L1 -54 6130 5888 7 893 426 69 0 0 chr3 40481449 40481507 -119118276 + (TG)n Simple_repeat Simple_repeat 1 58 0 7 893 419 307 193 0 chr3 40481513 40481663 -119118120 - B3A SINE B2 -18 180 2 7 893 569 236 8 31 chr3 40482441 40482568 -119117215 - B1F1 SINE Alu -9 140 17 7 893 21 0 0 0 chr3 40483666 40483687 -119116096 + AT_rich Low_complexity Low_complexity 1 21 0 7 893 406 286 53 0 chr3 40483701 40483834 -119115949 - B1F SINE Alu -7 142 3 7 893 610 236 64 7 chr3 40484134 40484275 -119115508 + B1F SINE Alu 1 149 0 7 893 408 299 175 55 chr3 40484421 40484913 -119114870 - Lx8 LINE L1 -45 7428 6878 7 893 262 287 71 8 chr3 40486415 40486550 -119113233 + L2a LINE L2 3233 3422 -4 7 893 230 318 0 0 chr3 40486670 40486733 -119113050 + CT-rich Low_complexity Low_complexity 2 64 0 7 893 414 0 0 0 chr3 40487687 40487733 -119112050 + (TG)n Simple_repeat Simple_repeat 1 46 0 7 893 1528 37 10 16 chr3 40488093 40488285 -119111498 + B2_Mm1a SINE B2 2 192 -1 7 893 258 308 66 0 chr3 40488940 40489031 -119110752 - BC1_Mm scRNA scRNA -55 97 1 7 893 2042 153 92 24 chr3 40489080 40489502 -119110281 - RLTR11B LTR ERVK 0 453 3 7 893 654 267 141 115 chr3 40489761 40490371 -119109412 - L1MCa LINE L1 -5880 628 3 7 893 22 35 0 0 chr3 40491443 40491472 -119108311 + AT_rich Low_complexity Low_complexity 1 29 0 7 893 795 269 123 38 chr3 40492204 40492544 -119107239 - MTE2a LTR MaLR 0 379 11 7 893 458 226 85 0 chr3 40492845 40492951 -119106832 + PB1D9 SINE Alu 5 119 -1 7 893 315 0 0 0 chr3 40493024 40493059 -119106724 + (TA)n Simple_repeat Simple_repeat 2 36 0 7 893 839 188 0 39 chr3 40493079 40493234 -119106549 - B1_Mur4 SINE Alu 0 150 2 7 893 997 210 45 0 chr3 40493253 40493453 -119106330 - B3 SINE B2 -7 209 1 7 893 253 258 30 0 chr3 40493628 40493694 -119106089 - PB1D10 SINE Alu -49 68 1 7 893 572 247 61 7 chr3 40494969 40495116 -119104667 - RSINE1 SINE B4 0 165 11 7 893 387 217 10 52 chr3 40496123 40496220 -119103563 + B1F SINE Alu 1 93 -56 7 893 396 0 0 0 chr3 40497841 40497885 -119101898 + (TG)n Simple_repeat Simple_repeat 2 45 0 7 893 303 306 41 7 chr3 40498538 40498683 -119101100 + LTR16A LTR ERVL 201 350 -101 7 893 1114 245 25 18 chr3 40498930 40499212 -119100571 - B4 SINE B4 -1 291 8 7 893 300 336 71 77 chr3 40500531 40500686 -119099097 + RMER4A LTR ERVK 8 161 -305 1 894 672 252 73 15 chr3 40501931 40502136 -119097647 + ID_B1 SINE B4 2 218 -6 2 894 535 268 128 26 chr3 40502140 40502335 -119097448 + B3 SINE B2 2 216 0 3 894 218 311 159 9 chr3 40502749 40502856 -119096927 - L2a LINE L2 -28 3398 3276 4 894 285 234 102 93 chr3 40503105 40503223 -119096560 + PB1D9 SINE Alu 1 119 -1 5 894 429 179 0 0 chr3 40503432 40503499 -119096284 - ID4_ SINE ID -16 67 1 6 894 264 200 0 0 chr3 40504560 40504625 -119095158 + (TA)n Simple_repeat Simple_repeat 1 65 0 7 894 212 0 36 0 chr3 40504991 40505019 -119094764 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 8 894 574 222 127 16 chr3 40506049 40506221 -119093562 + B3A SINE B2 1 185 -10 9 894 3410 25 5 0 chr3 40506573 40506967 -119092816 - MTA_Mm LTR MaLR 0 396 1 1 894 267 232 18 0 chr3 40507951 40508007 -119091776 + B1F1 SINE Alu 2 58 -91 1 894 516 59 0 0 chr3 40508729 40508797 -119090986 + (TG)n Simple_repeat Simple_repeat 1 68 0 1 894 350 323 85 0 chr3 40508828 40508958 -119090825 - RSINE1 SINE B4 -21 144 4 1 894 388 289 264 10 chr3 40508973 40509287 -119090496 - L2a LINE L2 0 3426 3033 1 894 2655 85 64 3 chr3 40509648 40510038 -119089745 + L1_Mus4 LINE L1 6222 6635 -1 1 894 352 260 149 68 chr3 40510741 40510963 -119088820 + Charlie1b DNA MER1_type 42 277 -246 1 894 396 0 0 0 chr3 40510963 40511007 -119088776 + (CA)n Simple_repeat Simple_repeat 2 45 0 1 894 352 260 149 68 chr3 40511007 40511032 -119088751 + Charlie1b DNA MER1_type 278 308 -215 1 894 1380 241 166 40 chr3 40511035 40511304 -119088479 + Lx8 LINE L1 6459 6761 -712 1 894 396 0 0 0 chr3 40511304 40511348 -119088435 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 894 813 142 47 0 chr3 40511349 40511418 -119088365 - B1_Mus1 SINE Alu -12 136 68 2 894 189 121 0 0 chr3 40511418 40511451 -119088332 + (TA)n Simple_repeat Simple_repeat 2 34 0 2 894 813 142 47 0 chr3 40511451 40511508 -119088275 - B1_Mus1 SINE Alu -81 67 5 2 894 1380 241 166 40 chr3 40511508 40511737 -119088046 + Lx8 LINE L1 6762 7022 -451 1 894 186 43 0 0 chr3 40512015 40512038 -119087745 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2 894 307 179 219 95 chr3 40512103 40512208 -119087575 + PB1D9 SINE Alu 3 120 0 2 894 412 271 66 0 chr3 40513897 40514019 -119085764 - B1F2 SINE Alu -6 143 14 2 894 705 261 13 0 chr3 40514447 40514604 -119085179 - RSINE1 SINE B4 -4 161 3 2 894 7344 91 10 4 chr3 40514615 40516445 -119083338 - L1_Mus3 LINE L1 0 6638 4799 2 894 755 69 15 296 chr3 40516910 40517116 -119082667 + B1_Mus1 SINE Alu 1 148 0 2 894 746 89 9 0 chr3 40517117 40517229 -119082554 + (GA)n Simple_repeat Simple_repeat 2 114 0 2 894 897 251 25 0 chr3 40517353 40517556 -119082227 + B3 SINE B2 2 209 -7 2 894 681 216 37 7 chr3 40517574 40517709 -119082074 - B1_Mur2 SINE Alu -10 139 1 3 894 25 0 0 0 chr3 40517946 40517971 -119081812 + AT_rich Low_complexity Low_complexity 1 25 0 3 894 488 217 25 117 chr3 40518576 40518738 -119081045 - RLTR23 LTR ERV1 -276 154 8 3 894 437 242 23 0 chr3 40518759 40518891 -119080892 - L1MA9 LINE L1 -100 6212 6078 3 894 275 220 20 90 chr3 40518951 40519051 -119080732 + MT2B LTR ERVL 172 264 -337 3 894 669 131 9 18 chr3 40518975 40519084 -119080699 + B1_Mur3 SINE Alu 40 147 -2 3 894 1187 258 95 10 chr3 40519094 40519579 -119080204 - L1MA7 LINE L1 -205 6086 5561 3 894 22 35 0 0 chr3 40520660 40520689 -119079094 + AT_rich Low_complexity Low_complexity 1 29 0 3 894 25 31 0 0 chr3 40520711 40520743 -119079040 + AT_rich Low_complexity Low_complexity 1 32 0 3 894 300 246 82 0 chr3 40520982 40521043 -119078740 + tRNA-Ala-GCA tRNA tRNA 2 67 -8 3 894 753 315 99 30 chr3 40521092 40521354 -119078429 + B4 SINE B4 7 286 -6 4 894 397 275 7 105 chr3 40521475 40521751 -119078032 + L1M2 LINE L1 3655 3903 -2240 4 894 535 298 55 28 chr3 40521745 40522000 -119077783 + L1M2 LINE L1 2546 2807 -3336 4 894 341 307 81 31 chr3 40523138 40523397 -119076386 + L1MB8 LINE L1 5753 6024 -154 4 894 272 264 135 0 chr3 40523461 40523609 -119076174 + L1MB8 LINE L1 5992 6159 -19 4 894 866 68 17 8 chr3 40523826 40523945 -119075838 + PB1D9 SINE Alu 1 120 0 4 894 210 154 0 0 chr3 40523945 40523984 -119075799 + A-rich Low_complexity Low_complexity 1 39 0 4 894 288 0 0 0 chr3 40524540 40524572 -119075211 + (TTG)n Simple_repeat Simple_repeat 2 33 0 4 894 854 129 0 0 chr3 40524594 40524718 -119075065 - B1_Mus2 SINE Alu 0 147 24 4 894 409 201 20 92 chr3 40524639 40524784 -119074999 - MT2B LTR ERVL -327 257 119 4 894 660 321 6 18 chr3 40524801 40524972 -119074811 - B3A SINE B2 -4 194 26 5 894 1138 56 28 0 chr3 40525704 40525847 -119073936 + B1_Mus2 SINE Alu 1 147 0 5 894 21 71 0 0 chr3 40526459 40526501 -119073282 + AT_rich Low_complexity Low_complexity 1 42 0 5 894 751 263 38 19 chr3 40526918 40527127 -119072656 - B3 SINE B2 -3 213 1 5 894 188 310 136 29 chr3 40527327 40527430 -119072353 - L2c LINE L2 0 3387 3274 5 894 407 302 83 126 chr3 40527891 40527919 -119071864 - B4 SINE B4 0 292 275 5 894 228 35 0 0 chr3 40527919 40527948 -119071835 + (CA)n Simple_repeat Simple_repeat 1 29 0 5 894 407 302 83 126 chr3 40527948 40528173 -119071610 - B4 SINE B4 -18 274 50 5 894 270 200 0 20 chr3 40528304 40528355 -119071428 - B1_Mur4 SINE Alu -100 50 1 5 894 353 268 44 9 chr3 40529647 40529760 -119070023 + PB1D10 SINE Alu 1 117 0 5 894 1400 262 185 16 chr3 40530752 40531197 -119068586 - Lx8 LINE L1 0 7473 6950 5 894 533 15 15 0 chr3 40531197 40531263 -119068520 + (TGGA)n Simple_repeat Simple_repeat 3 69 0 6 894 1400 262 185 16 chr3 40531263 40531545 -119068238 - Lx8 LINE L1 -524 6949 6624 5 894 1168 249 76 16 chr3 40531573 40532103 -119067680 - Lx8 LINE L1 -1512 5961 5402 5 894 4494 170 109 4 chr3 40532105 40533033 -119066750 - RMER1A Other Other -5 1025 1 6 894 1674 251 93 42 chr3 40533063 40533803 -119065980 - RMER1B Other Other -514 552 7 6 894 4040 240 105 149 chr3 40534123 40535069 -119064714 - Lx8 LINE L1 -476 5404 4557 5 894 1327 209 178 58 chr3 40535069 40535591 -119064192 - RMER4B LTR ERVK 0 585 1 6 894 4040 240 105 149 chr3 40535591 40536009 -119063774 - Lx8 LINE L1 -1324 4556 4101 5 894 671 188 229 0 chr3 40536009 40536179 -119063604 + B3 SINE B2 1 209 -7 6 894 4040 240 105 149 chr3 40536179 40536938 -119062845 - Lx8 LINE L1 -1780 4100 3326 5 894 732 163 65 22 chr3 40536938 40537076 -119062707 - B1_Mur3 SINE Alu 0 149 6 6 894 4040 240 105 149 chr3 40537076 40538092 -119061691 - Lx8 LINE L1 -1780 3325 2286 5 894 191 61 30 0 chr3 40538092 40538125 -119061658 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 6 894 4040 240 105 149 chr3 40538125 40538198 -119061585 - Lx8 LINE L1 -3595 2285 2200 5 894 2384 118 31 10 chr3 40538198 40538585 -119061198 - RMER6A LTR ERVK 0 756 362 6 894 735 305 96 23 chr3 40538612 40539300 -119060483 - L1_Rod LINE L1 -3923 1924 1181 6 894 497 127 0 12 chr3 40539894 40539974 -119059809 - B1_Mur4 SINE Alu -1 149 71 6 894 296 309 50 30 chr3 40540119 40540219 -119059564 - MLT1A1 LTR MaLR -224 184 83 7 894 318 26 0 0 chr3 40540620 40540659 -119059124 + (TG)n Simple_repeat Simple_repeat 1 39 0 7 894 1190 56 19 0 chr3 40540733 40540895 -119058888 - L1Md_F2 LINE L1 -2 6580 6416 7 894 438 165 0 0 chr3 40541333 40541412 -119058371 + CT-rich Low_complexity Low_complexity 3 81 0 7 894 195 100 0 0 chr3 40541409 40541439 -119058344 + (TC)n Simple_repeat Simple_repeat 1 30 0 7 894 268 255 84 11 chr3 40542027 40542122 -119057661 + PB1D7 SINE Alu 1 102 -18 7 894 2076 132 93 56 chr3 40542431 40542880 -119056903 - RMER4A LTR ERVK 0 466 1 7 894 641 191 180 27 chr3 40543148 40543362 -119056421 - MT2A LTR ERVL 0 601 245 7 894 21 71 0 0 chr3 40543431 40543473 -119056310 + AT_rich Low_complexity Low_complexity 1 42 0 7 894 31 26 0 0 chr3 40544532 40544570 -119055213 + AT_rich Low_complexity Low_complexity 1 38 0 7 894 640 229 43 54 chr3 40544869 40545054 -119054729 - B3A SINE B2 -14 184 2 8 894 240 122 0 0 chr3 40545073 40545114 -119054669 + (A)n Simple_repeat Simple_repeat 1 41 0 8 894 243 260 0 0 chr3 40545611 40545661 -119054122 + LTR79 LTR ERVL 220 269 -258 8 894 822 227 112 12 chr3 40545913 40546252 -119053531 - MTC LTR MaLR -8 413 1 8 894 280 267 0 0 chr3 40546317 40546377 -119053406 + ID4_ SINE ID 11 70 -13 8 894 1848 178 48 7 chr3 40546746 40547090 -119052693 + ORR1D1 LTR MaLR 4 411 -8 8 894 246 62 0 0 chr3 40549180 40549212 -119050571 + (CCCCG)n Simple_repeat Simple_repeat 5 36 0 8 894 22 35 0 0 chr3 40549416 40549445 -119050338 + GC_rich Low_complexity Low_complexity 1 29 0 8 894 28 48 0 0 chr3 40550890 40550932 -119048851 + AT_rich Low_complexity Low_complexity 1 42 0 8 894 468 262 19 10 chr3 40551788 40551892 -119047891 - PB1D10 SINE Alu -7 110 6 8 894 263 256 31 113 chr3 40551816 40551913 -119047870 - MT2B2 LTR ERVL -343 241 153 9 894 468 266 88 78 chr3 40552347 40552539 -119047244 + MER20 DNA MER1_type 1 194 -25 9 894 305 326 157 17 chr3 40553148 40553326 -119046457 + MER3 DNA MER1_type 1 203 -6 9 894 229 319 67 125 chr3 40553547 40553787 -119045996 - MLT1A0 LTR MaLR -120 245 20 9 894 333 359 60 40 chr3 40554142 40554342 -119045441 - MIR SINE MIR -22 240 37 9 894 367 231 114 9 chr3 40554787 40554892 -119044891 + PB1D10 SINE Alu 2 117 0 9 894 454 275 64 0 chr3 40555326 40555435 -119044348 + ID_B1 SINE B4 102 217 -7 9 894 697 260 5 22 chr3 40555671 40555856 -119043927 - B3A SINE B2 -16 182 1 9 894 631 178 132 71 chr3 40556269 40556451 -119043332 + B3A SINE B2 1 193 -5 9 894 848 218 29 44 chr3 40556507 40556713 -119043070 + B3 SINE B2 1 203 -13 9 894 210 37 0 0 chr3 40556832 40556859 -119042924 + (TC)n Simple_repeat Simple_repeat 1 27 0 1 894 1486 208 116 11 chr3 40557329 40557708 -119042075 + MTD LTR MaLR 1 419 0 1 894 745 276 127 40 chr3 40558048 40558569 -119041214 + L1MB7 LINE L1 5609 6174 -10 1 894 327 200 11 91 chr3 40558951 40559039 -119040744 + BC1_Mm scRNA scRNA 2 82 -70 1 894 795 205 52 11 chr3 40559439 40559622 -119040161 - B3 SINE B2 0 198 2 1 894 710 238 135 0 chr3 40559921 40560106 -119039677 - B3 SINE B2 -5 211 2 1 894 1255 83 0 6 chr3 40560166 40560336 -119039447 + B2_Mm2 SINE B2 1 169 -26 1 894 332 68 85 0 chr3 40560350 40560409 -119039374 + B2_Mm1a SINE B2 127 190 -3 1 894 394 338 6 6 chr3 40561271 40561429 -119038354 + RSINE1 SINE B4 2 159 -6 1 894 261 291 64 43 chr3 40561941 40562081 -119037702 - MIR SINE MIR -4 258 116 1 894 684 247 14 7 chr3 40562385 40562532 -119037251 + B1_Mur2 SINE Alu 2 149 0 1 894 526 327 12 30 chr3 40562569 40562736 -119037047 + RSINE1 SINE B4 2 165 0 1 894 24 32 0 0 chr3 40562828 40562859 -119036924 + AT_rich Low_complexity Low_complexity 1 31 0 1 894 806 206 30 64 chr3 40563083 40563285 -119036498 - B3A SINE B2 -3 195 1 1 894 213 39 0 0 chr3 40563296 40563322 -119036461 + (CTCTG)n Simple_repeat Simple_repeat 1 26 0 1 894 684 67 0 0 chr3 40563322 40563412 -119036371 + (TCTCC)n Simple_repeat Simple_repeat 5 94 0 1 894 544 178 124 85 chr3 40563598 40563727 -119036056 - B1F2 SINE Alu -5 144 11 1 894 276 230 12 119 chr3 40563659 40563743 -119036040 - MT2B2 LTR ERVL -349 235 161 1 894 935 239 19 0 chr3 40564958 40565163 -119034620 + B3 SINE B2 2 210 -6 1 894 297 130 48 29 chr3 40565178 40565281 -119034502 + (CATATA)n Simple_repeat Simple_repeat 3 107 0 1 894 274 320 25 45 chr3 40565394 40565551 -119034232 - RMER15 LTR ERVL -143 432 279 1 894 22 0 0 0 chr3 40566283 40566305 -119033478 + AT_rich Low_complexity Low_complexity 1 22 0 1 894 24 32 0 0 chr3 40566679 40566710 -119033073 + AT_rich Low_complexity Low_complexity 1 31 0 1 894 1196 206 103 116 chr3 40566710 40567089 -119032694 + ORR1D1 LTR MaLR 1 374 0 1 894 9525 136 53 40 chr3 40567111 40568933 -119030850 - RLTR22_Mur LTR ERVK 0 1848 3 1 894 5095 187 70 127 chr3 40568934 40570367 -119029416 + ORR1D1-int LTR MaLR 18 1369 -1 1 894 1307 200 162 0 chr3 40570368 40570688 -119029095 + ORR1D1 LTR MaLR 1 372 -2 1 894 213 39 0 0 chr3 40571224 40571250 -119028533 + (TTTTG)n Simple_repeat Simple_repeat 5 30 0 1 894 1203 78 44 11 chr3 40571412 40571594 -119028189 + B2_Mm2 SINE B2 2 189 -6 1 894 573 88 0 0 chr3 40572247 40572327 -119027456 + (TA)n Simple_repeat Simple_repeat 1 80 0 1 894 281 273 0 18 chr3 40572327 40572383 -119027400 - PB1D9 SINE Alu -65 55 1 1 894 23 33 0 0 chr3 40572785 40572815 -119026968 + AT_rich Low_complexity Low_complexity 1 30 0 1 894 361 136 0 43 chr3 40572966 40573035 -119026748 + MTB_Mm LTR MaLR 57 122 -299 1 894 1060 184 59 5 chr3 40573169 40573371 -119026412 + URR1B DNA MER1_type 1 213 -12 1 894 707 174 0 8 chr3 40573369 40573491 -119026292 + MTB_Mm LTR MaLR 287 407 0 1 894 342 314 74 56 chr3 40573901 40574117 -119025666 + L1MC4 LINE L1 7821 8040 -2 1 894 813 92 0 0 chr3 40574831 40574951 -119024832 + (TG)n Simple_repeat Simple_repeat 1 120 0 1 894 39 22 0 0 chr3 40575259 40575305 -119024478 + AT_rich Low_complexity Low_complexity 1 46 0 1 894 322 287 108 47 chr3 40575381 40575612 -119024171 - MLT1C LTR MaLR -16 451 149 1 894 583 206 36 44 chr3 40576055 40576192 -119023591 + RSINE1 SINE B4 8 143 -22 1 894 604 140 10 10 chr3 40576956 40577057 -119022726 - PB1D9 SINE Alu -3 117 17 1 894 526 244 26 0 chr3 40577222 40577337 -119022446 - ID_B1 SINE B4 -12 212 95 1 894 429 157 11 61 chr3 40577469 40577569 -119022214 - B1_Mus2 SINE Alu 0 147 35 1 894 404 19 19 0 chr3 40577577 40577630 -119022153 + (CA)n Simple_repeat Simple_repeat 1 54 0 1 894 282 350 82 0 chr3 40577669 40577766 -119022017 + PB1D7 SINE Alu 11 115 -5 1 894 993 184 66 0 chr3 40577776 40577972 -119021811 + B3 SINE B2 1 209 -7 1 894 3090 169 40 26 chr3 40578264 40578918 -119020865 - L1_Mur3 LINE L1 -824 5056 4394 1 894 7526 139 42 6 chr3 40578899 40580290 -119019493 - L1_Mur3 LINE L1 -2229 3648 2207 1 894 3620 183 127 27 chr3 40580290 40580886 -119018897 - RMER19B LTR ERVK 0 902 242 1 894 285 51 0 0 chr3 40580886 40580925 -119018858 + (TTATA)n Simple_repeat Simple_repeat 4 42 0 1 894 3620 183 127 27 chr3 40580925 40581148 -119018635 - RMER19B LTR ERVK -661 241 1 1 894 3879 196 75 34 chr3 40581148 40582416 -119017367 - L1_Mur3 LINE L1 -3665 2212 889 1 894 382 106 15 0 chr3 40582794 40582860 -119016923 + Lx7 LINE L1 7630 7696 0 1 894 186 43 0 0 chr3 40583605 40583628 -119016155 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1 894 484 222 7 112 chr3 40584347 40584499 -119015284 - B1_Mur1 SINE Alu -13 136 1 1 894 233 229 206 7 chr3 40584752 40584893 -119014890 - L1M4 LINE L1 -394 5784 5616 1 894 333 200 347 0 chr3 40584894 40584989 -119014794 - RSINE1 SINE B4 -35 130 3 1 894 338 269 34 96 chr3 40584989 40585166 -119014617 - L1M4 LINE L1 -604 5580 5415 1 894 369 43 0 0 chr3 40585222 40585269 -119014514 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 894 348 270 14 0 chr3 40585279 40585353 -119014430 - ID4_ SINE ID -7 76 2 1 894 347 305 76 0 chr3 40585877 40586008 -119013775 - B1F1 SINE Alu -8 141 1 1 894 279 291 19 10 chr3 40586106 40586210 -119013573 - PB1D10 SINE Alu -10 107 3 1 894 186 333 0 0 chr3 40586871 40586940 -119012843 - MIR SINE MIR -77 185 117 1 894 473 296 155 24 chr3 40587279 40587787 -119011996 - L1MB4 LINE L1 -13 6167 5596 1 894 21 0 0 0 chr3 40587793 40587814 -119011969 + AT_rich Low_complexity Low_complexity 1 21 0 1 894 431 170 211 11 chr3 40587827 40587922 -119011861 - PB1D9 SINE Alu -6 114 1 1 894 281 314 77 33 chr3 40587934 40588115 -119011668 - L1MB4 LINE L1 -583 5597 5409 1 894 676 206 0 41 chr3 40588745 40588892 -119010891 + B1_Mur3 SINE Alu 2 142 -7 1 894 23 0 0 0 chr3 40589906 40589929 -119009854 + AT_rich Low_complexity Low_complexity 1 23 0 1 894 396 232 31 62 chr3 40590864 40591025 -119008758 - RSINE1 SINE B4 -5 160 5 1 894 2801 87 8 22 chr3 40591213 40591247 -119008536 - MTA_Mm LTR MaLR 0 396 364 1 894 2884 54 0 13 chr3 40591247 40591621 -119008162 + L1_Mus1 LINE L1 6195 6563 -4 1 894 2801 87 8 22 chr3 40591621 40591988 -119007795 - MTA_Mm LTR MaLR -33 363 1 1 894 287 246 0 14 chr3 40592619 40592693 -119007090 - RMER5 LTR ERV1 -11 523 451 1 894 386 262 0 0 chr3 40592686 40592766 -119007017 + B3 SINE B2 51 130 -86 1 894 31 26 0 0 chr3 40592803 40592841 -119006942 + AT_rich Low_complexity Low_complexity 1 38 0 1 894 713 175 73 0 chr3 40592848 40592985 -119006798 + B1_Mus2 SINE Alu 1 147 0 1 894 613 168 60 15 chr3 40595600 40595733 -119004050 + B1_Mur3 SINE Alu 1 139 -10 1 894 193 163 0 39 chr3 40595801 40595852 -119003931 + GA-rich Low_complexity Low_complexity 4 52 0 1 894 670 221 14 22 chr3 40596142 40596281 -119003502 + B1_Mur1 SINE Alu 12 149 0 1 894 751 223 162 5 chr3 40597101 40597286 -119002497 + B3 SINE B2 1 214 -2 1 894 1929 165 48 27 chr3 40597382 40597756 -119002027 - ORR1C2 LTR MaLR 0 384 3 1 894 249 33 0 0 chr3 40597845 40597875 -119001908 + (A)n Simple_repeat Simple_repeat 1 30 0 1 894 845 18 115 0 chr3 40597927 40598040 -119001743 - B2_Mm2 SINE B2 0 195 70 1 894 1242 62 6 0 chr3 40598045 40598205 -119001578 - B2_Mm2 SINE B2 -30 165 5 1 894 435 243 39 0 chr3 40598699 40598802 -119000981 - PB1D10 SINE Alu -9 108 2 1 894 528 195 53 75 chr3 40599356 40599489 -119000294 - B1_Mur4 SINE Alu -19 131 2 1 894 295 312 114 14 chr3 40600305 40600445 -118999338 + RSINE1 SINE B4 2 155 -10 1 894 364 289 0 49 chr3 40600614 40600626 -118999157 + ID SINE ID 73 79 -145 1 894 413 282 2 9 chr3 40600626 40600740 -118999043 + B1_Mm SINE Alu 1 115 -5 1 894 261 0 0 0 chr3 40600741 40600770 -118999013 + (TG)n Simple_repeat Simple_repeat 2 30 0 1 894 23 0 0 0 chr3 40600813 40600836 -118998947 + AT_rich Low_complexity Low_complexity 1 23 0 1 894 649 134 143 0 chr3 40600954 40601073 -118998710 + B1_Mur4 SINE Alu 6 141 -9 1 894 252 192 0 0 chr3 40602158 40602214 -118997569 + PB1D10 SINE Alu 64 123 -4 1 894 249 314 50 50 chr3 40602525 40602723 -118997060 - B3A SINE B2 0 198 1 1 894 278 235 78 10 chr3 40603004 40603107 -118996676 + MER87 LTR ERV1 424 533 -8 1 894 212 301 151 73 chr3 40603374 40603470 -118996313 - ID_B1 SINE B4 -27 197 5 1 894 267 222 0 132 chr3 40603470 40603553 -118996230 - ID4 SINE ID -7 76 5 1 894 281 256 38 25 chr3 40605595 40605675 -118994108 + ID4_ SINE ID 1 81 -2 1 894 405 198 110 28 chr3 40606111 40606220 -118993563 - PB1D9 SINE Alu 0 120 3 1 894 716 249 96 0 chr3 40606250 40606447 -118993336 - B3 SINE B2 0 216 1 1 894 387 250 0 24 chr3 40606545 40606627 -118993156 - B3A SINE B2 -116 82 3 1 894 409 362 16 0 chr3 40607222 40607349 -118992434 - RSINE1 SINE B4 -33 132 4 1 894 258 284 37 0 chr3 40607871 40607952 -118991831 + L1M LINE L1 5330 5413 -711 1 894 369 0 0 0 chr3 40607988 40608029 -118991754 + (TG)n Simple_repeat Simple_repeat 1 41 0 1 894 504 0 0 0 chr3 40608029 40608084 -118991699 + (GA)n Simple_repeat Simple_repeat 1 56 0 1 894 400 230 8 58 chr3 40611529 40611649 -118988134 + PB1D9 SINE Alu 1 114 -6 1 894 24 32 0 0 chr3 40611683 40611714 -118988069 + AT_rich Low_complexity Low_complexity 1 31 0 1 894 1683 31 10 5 chr3 40612157 40612349 -118987434 + B2_Mm1t SINE B2 1 193 0 1 894 761 190 22 7 chr3 40612451 40612589 -118987194 + B1_Mur2 SINE Alu 1 140 -9 1 894 456 320 57 34 chr3 40613398 40613573 -118986210 - B3 SINE B2 -4 212 34 2 894 23 68 0 0 chr3 40613593 40613637 -118986146 + AT_rich Low_complexity Low_complexity 1 44 0 2 894 30 93 0 0 chr3 40614411 40614497 -118985286 + AT_rich Low_complexity Low_complexity 1 86 0 2 894 330 329 92 35 chr3 40616281 40616423 -118983360 + RSINE1 SINE B4 3 152 -13 2 894 28 0 0 0 chr3 40616458 40616486 -118983297 + AT_rich Low_complexity Low_complexity 1 28 0 2 894 261 268 0 14 chr3 40617089 40617161 -118982622 + (TATATG)n Simple_repeat Simple_repeat 2 72 0 2 894 255 309 83 21 chr3 40618390 40618486 -118981297 + PB1D9 SINE Alu 3 104 -16 2 894 775 203 142 16 chr3 40618501 40618691 -118981092 + B3 SINE B2 2 215 -1 2 894 21 36 0 0 chr3 40619083 40619111 -118980672 + AT_rich Low_complexity Low_complexity 1 28 0 2 894 635 232 20 40 chr3 40619310 40619458 -118980325 + B1_Mm SINE Alu 2 146 -1 2 894 616 282 136 0 chr3 40619475 40619688 -118980095 + B4A SINE B4 2 243 -49 2 894 323 206 132 0 chr3 40619723 40619791 -118979992 + ID_B1 SINE B4 142 218 -6 2 894 294 316 0 12 chr3 40619861 40619941 -118979842 - ID4_ SINE ID -1 82 4 2 894 23 0 0 0 chr3 40620713 40620736 -118979047 + AT_rich Low_complexity Low_complexity 1 23 0 2 894 1284 73 60 6 chr3 40621192 40621358 -118978425 - B2_Mm2 SINE B2 -19 176 2 2 894 562 151 23 178 chr3 40621678 40621807 -118977976 - B1_Mus1 SINE Alu 0 148 40 2 894 35 71 0 0 chr3 40623087 40623157 -118976626 + AT_rich Low_complexity Low_complexity 1 70 0 2 894 288 259 37 12 chr3 40623746 40623828 -118975955 + ID_B1 SINE B4 70 153 -71 2 894 354 244 133 0 chr3 40623762 40623852 -118975931 + PB1D10 SINE Alu 6 107 -10 2 894 371 248 25 41 chr3 40624031 40624153 -118975630 + B4 SINE B4 83 202 -90 2 894 566 309 80 0 chr3 40624170 40624332 -118975451 - B3A SINE B2 -23 175 1 2 894 452 321 38 0 chr3 40624335 40624466 -118975317 - B1F2 SINE Alu -1 148 13 2 894 241 343 0 14 chr3 40624840 40624911 -118974872 - ID4 SINE ID -11 72 3 2 894 1254 34 7 7 chr3 40624951 40625097 -118974686 - B1_Mm SINE Alu 0 147 2 2 894 682 252 52 0 chr3 40625107 40625242 -118974541 - B1F1 SINE Alu -7 142 1 2 894 250 135 0 0 chr3 40626393 40626430 -118973353 + B1F SINE Alu 108 144 -5 2 894 475 114 14 28 chr3 40626641 40626713 -118973070 + ID4_ SINE ID 4 74 -9 2 894 391 208 69 0 chr3 40626828 40626900 -118972883 + ID4 SINE ID 1 77 -6 2 894 436 229 42 0 chr3 40627007 40627103 -118972680 + PB1D10 SINE Alu 17 116 -1 2 894 210 229 115 0 chr3 40627140 40627201 -118972582 - PB1D10 SINE Alu -6 111 44 2 894 23 0 0 0 chr3 40627372 40627395 -118972388 + AT_rich Low_complexity Low_complexity 1 23 0 2 894 714 206 19 76 chr3 40627442 40627600 -118972183 + B1_Mur1 SINE Alu 1 149 0 2 894 295 304 225 9 chr3 40628531 40628989 -118970794 + L1MB4 LINE L1 5561 6117 -63 2 894 1268 93 39 0 chr3 40629007 40629189 -118970594 - B2_Mm2 SINE B2 0 195 7 2 894 1203 194 14 23 chr3 40629194 40629410 -118970373 + B3 SINE B2 2 215 -1 2 894 359 250 0 0 chr3 40629470 40629550 -118970233 + B1F SINE Alu 68 147 -2 2 894 274 203 186 0 chr3 40629557 40629616 -118970167 + ID4_ SINE ID 3 72 -11 2 894 294 29 0 0 chr3 40629872 40629907 -118969876 + (TG)n Simple_repeat Simple_repeat 2 36 0 2 894 352 309 35 35 chr3 40630087 40630201 -118969582 + PB1D9 SINE Alu 1 114 -6 2 894 366 23 0 0 chr3 40630201 40630244 -118969539 + (GA)n Simple_repeat Simple_repeat 1 43 0 2 894 573 55 0 0 chr3 40630244 40630317 -118969466 + (GGAA)n Simple_repeat Simple_repeat 4 76 0 2 894 917 170 20 0 chr3 40630386 40630533 -118969250 - B1_Mur4 SINE Alu 0 150 1 2 894 1350 34 0 0 chr3 40630562 40630710 -118969073 + B1_Mus1 SINE Alu 1 148 0 2 894 338 186 0 7 chr3 40630977 40631055 -118968728 + PB1D7 SINE Alu 1 76 -73 2 894 22 0 0 0 chr3 40631355 40631377 -118968406 + AT_rich Low_complexity Low_complexity 1 22 0 2 894 351 235 121 10 chr3 40631418 40631517 -118968266 + RSINE1 SINE B4 2 111 -54 2 894 568 224 19 0 chr3 40631724 40631831 -118967952 + PB1D10 SINE Alu 2 110 -7 2 895 840 232 71 7 chr3 40632525 40632716 -118967067 - B3 SINE B2 -6 210 7 2 895 289 294 94 14 chr3 40633065 40633203 -118966580 + B4A SINE B4 2 150 -142 2 895 4116 112 33 14 chr3 40633219 40633860 -118965923 + Lx2A LINE L1 6316 6968 -40 2 895 285 263 0 95 chr3 40633930 40634014 -118965769 + B4A SINE B4 216 291 -1 2 895 315 246 145 38 chr3 40634112 40634243 -118965540 + B1F2 SINE Alu 1 145 -4 2 895 246 329 0 60 chr3 40634774 40634858 -118964925 - ID4_ SINE ID 0 83 5 2 895 350 333 0 34 chr3 40635102 40635220 -118964563 + PB1D10 SINE Alu 2 115 -2 2 895 284 274 8 89 chr3 40635427 40635551 -118964232 + PB1D10 SINE Alu 2 115 -2 2 895 606 240 158 22 chr3 40635559 40635742 -118964041 + B3 SINE B2 3 210 -6 2 895 335 212 45 0 chr3 40635761 40635827 -118963956 + ID4_ SINE ID 2 70 -13 2 895 180 171 0 0 chr3 40636257 40636270 -118963513 + (CATA)n Simple_repeat Simple_repeat 4 16 0 2 895 216 97 0 0 chr3 40636270 40636301 -118963482 + (TG)n Simple_repeat Simple_repeat 2 32 0 2 895 180 171 0 0 chr3 40636301 40636328 -118963455 + (CATA)n Simple_repeat Simple_repeat 1 27 0 2 895 266 289 36 0 chr3 40636333 40636416 -118963367 + MER106B DNA MER1_type 946 1031 -28 2 895 310 297 18 42 chr3 40636757 40636922 -118962861 - RSINE1 SINE B4 0 165 5 2 895 1496 80 0 5 chr3 40637342 40637530 -118962253 + B2_Mm2 SINE B2 3 189 -6 2 895 414 221 248 0 chr3 40638156 40638269 -118961514 + B1F1 SINE Alu 1 141 -8 2 895 688 257 42 37 chr3 40638499 40638689 -118961094 + B3A SINE B2 3 193 -5 2 895 357 327 28 0 chr3 40639388 40639579 -118960204 - L1MC LINE L1 -2077 5708 5514 2 895 370 299 82 23 chr3 40639629 40639800 -118959983 - MER2 DNA MER2_type -34 311 131 2 895 702 86 8 17 chr3 40639954 40640072 -118959711 + (GGAA)n Simple_repeat Simple_repeat 3 119 0 2 895 820 259 38 17 chr3 40640344 40640583 -118959200 + MER2 DNA MER2_type 96 339 -6 2 895 339 276 34 11 chr3 40641714 40641802 -118957981 + PB1D10 SINE Alu 3 92 -25 2 895 505 286 34 41 chr3 40641896 40642042 -118957741 + B4A SINE B4 2 146 -146 2 895 823 197 161 43 chr3 40642141 40642327 -118957456 + B3 SINE B2 2 209 -7 2 895 279 243 157 0 chr3 40642391 40642461 -118957322 - RSINE1 SINE B4 -82 83 3 2 895 224 264 66 0 chr3 40642513 40642558 -118957225 - BC1_Mm scRNA scRNA -23 129 84 2 895 383 0 21 0 chr3 40642558 40642605 -118957178 + (TTA)n Simple_repeat Simple_repeat 2 49 0 2 895 272 233 83 0 chr3 40642605 40642665 -118957118 - ID4_ SINE ID -2 81 17 2 895 348 221 0 0 chr3 40642737 40642810 -118956973 + B1F SINE Alu 1 73 -44 2 895 589 252 0 0 chr3 40643005 40643112 -118956671 + PB1D10 SINE Alu 1 107 -10 2 895 626 160 87 16 chr3 40643121 40643248 -118956535 + B1_Mur3 SINE Alu 13 148 -1 2 895 680 193 37 0 chr3 40643674 40643809 -118955974 + B1_Mur3 SINE Alu 9 148 -1 2 895 645 253 39 28 chr3 40644075 40644254 -118955529 - B4A SINE B4 -111 181 1 2 895 247 288 99 12 chr3 40644392 40644473 -118955310 + RSINE1 SINE B4 11 98 -67 2 895 243 0 0 0 chr3 40644503 40644530 -118955253 + (CA)n Simple_repeat Simple_repeat 2 28 0 2 895 524 90 282 0 chr3 40644533 40644657 -118955126 + B2_Mm2 SINE B2 3 161 -34 2 895 207 0 0 0 chr3 40644657 40644680 -118955103 + (TAAA)n Simple_repeat Simple_repeat 1 23 0 2 895 341 311 45 45 chr3 40645332 40645356 -118954427 + B4 SINE B4 67 221 -71 2 895 747 154 53 8 chr3 40645356 40645487 -118954296 + B1_Mur3 SINE Alu 9 145 -4 2 895 520 292 55 14 chr3 40645608 40645754 -118954029 - RSINE1 SINE B4 -12 153 2 2 895 413 203 39 72 chr3 40646057 40646168 -118953615 + PB1D9 SINE Alu 5 149 -1 2 895 228 287 78 33 chr3 40646183 40646273 -118953510 + ID_B1 SINE B4 130 223 -1 2 895 310 228 24 48 chr3 40646195 40646278 -118953505 + B1F1 SINE Alu 69 149 0 2 895 255 276 0 183 chr3 40646293 40646413 -118953370 + B1F SINE Alu 18 115 -34 2 895 327 234 10 21 chr3 40646348 40646444 -118953339 + ID_B1 SINE B4 130 224 0 2 895 277 167 14 96 chr3 40646531 40646604 -118953179 - B3 SINE B2 0 216 150 2 895 664 189 19 0 chr3 40646808 40646939 -118952844 - B1_Mur2 SINE Alu -1 148 13 2 895 948 153 106 0 chr3 40647315 40647485 -118952298 - B2_Mm2 SINE B2 -7 188 1 2 895 894 139 20 40 chr3 40647648 40647798 -118951985 + B1_Mur1 SINE Alu 3 149 0 2 895 186 43 0 0 chr3 40647802 40647825 -118951958 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2 895 354 270 49 49 chr3 40648249 40648393 -118951390 + B1F SINE Alu 1 144 -5 2 895 203 237 0 0 chr3 40648393 40648431 -118951352 + polypurine Low_complexity Low_complexity 1 38 0 2 895 275 336 115 0 chr3 40648537 40648659 -118951124 + MER58D DNA MER1_type 5 140 -246 2 895 292 260 73 46 chr3 40648721 40648830 -118950953 + MER58D DNA MER1_type 275 386 0 2 895 232 131 224 90 chr3 40652465 40652532 -118947251 - MIRc SINE MIR -159 109 34 3 895 315 0 0 0 chr3 40652986 40653021 -118946762 + (TG)n Simple_repeat Simple_repeat 1 35 0 3 895 249 140 0 0 chr3 40653021 40653078 -118946705 + (GA)n Simple_repeat Simple_repeat 2 58 0 3 895 475 280 161 21 chr3 40653094 40653280 -118946503 + B3 SINE B2 2 213 -3 3 895 224 324 42 0 chr3 40653361 40653432 -118946351 - RSINE1 SINE B4 -13 152 79 3 895 390 204 181 11 chr3 40653487 40653581 -118946202 + PB1D9 SINE Alu 1 110 -10 3 895 207 0 0 0 chr3 40653581 40653604 -118946179 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 3 895 247 283 0 16 chr3 40654031 40654092 -118945691 + B4A SINE B4 1 60 -232 3 895 221 204 20 0 chr3 40654177 40654226 -118945557 + (CATA)n Simple_repeat Simple_repeat 1 50 0 3 895 22 0 0 0 chr3 40654594 40654616 -118945167 + AT_rich Low_complexity Low_complexity 1 22 0 3 895 644 215 42 0 chr3 40654621 40654755 -118945028 + B1_Mur2 SINE Alu 3 149 0 3 895 1654 181 91 12 chr3 40655067 40655408 -118944375 - ORR1D1 LTR MaLR -4 370 3 3 895 642 288 25 6 chr3 40655811 40655968 -118943815 - RSINE1 SINE B4 -2 163 4 3 895 4151 54 0 0 chr3 40656014 40656494 -118943289 + L1_Mus1 LINE L1 6088 6567 0 3 895 403 174 104 42 chr3 40656533 40656629 -118943154 + PB1D9 SINE Alu 19 120 0 3 895 600 233 0 0 chr3 40657282 40657428 -118942355 + CT-rich Low_complexity Low_complexity 1 146 0 3 895 363 344 71 85 chr3 40657428 40657711 -118942072 + MLT1E2 LTR MaLR 293 571 -109 3 895 420 226 20 73 chr3 40657816 40657929 -118941854 + PB1D10 SINE Alu 5 109 -8 3 895 222 254 59 15 chr3 40657946 40658014 -118941769 + ID4 SINE ID 4 74 -9 3 895 313 253 0 0 chr3 40659293 40659372 -118940411 - L1MB5 LINE L1 -213 5961 5883 3 895 343 342 38 57 chr3 40659421 40659579 -118940204 - RSINE1 SINE B4 -1 164 10 3 895 229 229 0 0 chr3 40659644 40659692 -118940091 - L1MB5 LINE L1 -408 5770 5723 3 895 732 201 241 0 chr3 40659762 40659936 -118939847 - B3 SINE B2 0 216 1 3 895 758 146 121 15 chr3 40659997 40660129 -118939654 - B1_Mus2 SINE Alu 0 147 2 3 895 883 202 20 54 chr3 40660151 40660355 -118939428 - B3A SINE B2 0 198 2 3 895 385 149 13 63 chr3 40660671 40660687 -118939096 - PB1D10 SINE Alu -1 116 106 3 895 216 0 0 0 chr3 40660687 40660711 -118939072 + (TTG)n Simple_repeat Simple_repeat 1 24 0 3 895 385 149 13 63 chr3 40660711 40660773 -118939010 - PB1D10 SINE Alu -12 105 43 3 895 1343 88 48 21 chr3 40661225 40661412 -118938371 + B2_Mm2 SINE B2 1 192 -3 3 895 3468 43 5 0 chr3 40662171 40662564 -118937219 - MTA_Mm LTR MaLR -1 395 1 3 895 8898 67 7 3 chr3 40662564 40663657 -118936126 - MTA_Mm-int LTR MaLR 0 1098 1 3 895 3127 69 12 37 chr3 40663657 40664063 -118935720 - MTA_Mm LTR MaLR 0 396 1 3 895 433 296 122 0 chr3 40664067 40664182 -118935601 + RSINE1 SINE B4 9 137 -28 3 895 674 67 9 0 chr3 40664226 40664321 -118935462 + B1_Mus1 SINE Alu 14 115 -33 3 895 3495 37 25 2 chr3 40664321 40664723 -118935060 - IAPLTR2a LTR ERVK 0 411 1 3 895 5390 65 13 7 chr3 40664725 40665409 -118934374 - IAPEz-int LTR ERVK -2 6479 5792 3 895 4193 39 16 0 chr3 40665407 40665900 -118933883 - IAPEz-int LTR ERVK -1086 5395 4895 3 895 1101 103 32 0 chr3 40665898 40666054 -118933729 - IAPEz-int LTR ERVK -2737 4943 4783 3 895 1877 102 0 0 chr3 40666049 40666295 -118933488 - IAPEz-int LTR ERVK -5183 2497 2252 3 895 9273 56 69 38 chr3 40666296 40667566 -118932217 - IAPEz-int LTR ERVK -5004 1477 168 3 895 228 321 0 0 chr3 40667566 40667619 -118932164 - RLTR27 LTR ERVK -34 275 223 3 895 808 83 121 76 chr3 40667619 40667776 -118932007 - IAPEz-int LTR ERVK -6286 195 32 3 895 307 156 0 51 chr3 40667778 40667812 -118931971 + B1_Mur3 SINE Alu 81 110 -39 3 895 2925 34 0 27 chr3 40667812 40668148 -118931635 - IAPLTR2b LTR ERVK 0 327 1 3 895 307 109 0 35 chr3 40668148 40668187 -118931596 + B1_Mur3 SINE Alu 111 149 0 3 895 266 201 5 0 chr3 40668200 40668252 -118931531 + B1_Mur4 SINE Alu 94 147 0 3 895 437 204 73 18 chr3 40668347 40668457 -118931326 - B3 SINE B2 0 216 101 3 895 1334 101 11 0 chr3 40668504 40668683 -118931100 + B2_Mm2 SINE B2 1 181 -14 3 895 462 70 286 36 chr3 40668711 40668825 -118930958 + B2_Mm2 SINE B2 47 191 -4 3 895 223 244 0 0 chr3 40668820 40668861 -118930922 - B3 SINE B2 -171 45 5 3 895 234 0 0 0 chr3 40668863 40668889 -118930894 + (TTGG)n Simple_repeat Simple_repeat 2 27 0 3 895 234 377 13 0 chr3 40668949 40669026 -118930757 + MIRb SINE MIR 8 85 -183 3 895 757 56 27 45 chr3 40669046 40669158 -118930625 - B1_Mus1 SINE Alu 0 148 39 3 895 1362 85 6 22 chr3 40669162 40669342 -118930441 - B2_Mm2 SINE B2 -17 178 2 3 895 7844 65 2 6 chr3 40669548 40670546 -118929237 - L1Md_F2 LINE L1 0 6582 5589 3 895 534 291 81 0 chr3 40670794 40670942 -118928841 + RSINE1 SINE B4 4 163 -2 3 895 396 0 0 0 chr3 40670981 40671025 -118928758 + (TG)n Simple_repeat Simple_repeat 1 44 0 3 895 477 0 0 0 chr3 40671025 40671077 -118928706 + (GA)n Simple_repeat Simple_repeat 1 53 0 3 895 639 244 30 22 chr3 40671113 40671247 -118928536 + B1F1 SINE Alu 1 135 -14 3 895 298 109 0 0 chr3 40671682 40671728 -118928055 - B3 SINE B2 -170 46 1 3 895 371 225 38 0 chr3 40671849 40671929 -118927854 + B1F SINE Alu 67 149 0 3 895 308 208 385 28 chr3 40671957 40672066 -118927717 + B1_Mur2 SINE Alu 2 149 0 3 895 228 345 66 11 chr3 40672092 40672183 -118927600 + PB1D10 SINE Alu 2 97 -20 3 895 2744 123 86 52 chr3 40672194 40672776 -118927007 - Lx2 LINE L1 -3 6997 6275 3 895 516 16 0 0 chr3 40672776 40672838 -118926945 + L1Md_T LINE L1 6521 6582 0 3 895 2744 101 0 58 chr3 40672838 40672879 -118926904 - Lx2 LINE L1 -723 6274 6239 3 895 1223 82 0 0 chr3 40673097 40673256 -118926527 + B2_Mm2 SINE B2 2 160 -35 3 895 1153 209 132 40 chr3 40673527 40673831 -118925952 - IAPEY3_LTR LTR ERVK 0 332 1 3 895 229 221 0 42 chr3 40673844 40673915 -118925868 + A-rich Low_complexity Low_complexity 1 68 0 3 895 276 235 19 75 chr3 40673961 40674009 -118925774 + L1MB8 LINE L1 6076 6123 -55 3 895 5356 133 26 11 chr3 40674009 40674851 -118924932 - RLTR13A LTR ERVK 0 855 1 3 895 276 235 19 75 chr3 40674851 40674908 -118924875 + L1MB8 LINE L1 6124 6175 -3 3 895 24 32 0 0 chr3 40674908 40674939 -118924844 + AT_rich Low_complexity Low_complexity 1 31 0 3 895 234 0 0 0 chr3 40675232 40675258 -118924525 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 3 895 565 145 60 173 chr3 40675258 40675408 -118924375 - B1_Mus1 SINE Alu -8 140 8 3 895 245 300 126 9 chr3 40675420 40675531 -118924252 - RLTR33 LTR ERVK -85 593 470 3 895 382 162 0 75 chr3 40675585 40675665 -118924118 - RLTR19C LTR ERVK -400 106 33 3 895 490 232 36 0 chr3 40675703 40675815 -118923968 - MERVL-int LTR ERVL -1127 4358 4243 3 895 994 152 250 17 chr3 40675813 40676053 -118923730 + ERVL-int LTR ERVL 4451 4746 -1011 3 895 1109 103 7 0 chr3 40676144 40676289 -118923494 + B1_Mus2 SINE Alu 2 147 0 3 895 740 137 169 0 chr3 40676389 40676513 -118923270 + B1_Mur3 SINE Alu 5 149 0 3 895 634 200 26 0 chr3 40676713 40676828 -118922955 + PB1D9 SINE Alu 2 119 -1 3 895 180 0 0 0 chr3 40677001 40677021 -118922762 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 3 895 288 275 50 0 chr3 40677782 40677862 -118921921 + ID_B1 SINE B4 86 169 -55 3 895 491 152 116 62 chr3 40677885 40677997 -118921786 + PB1D9 SINE Alu 2 119 -1 3 895 470 271 28 0 chr3 40678059 40678166 -118921617 + PB1D10 SINE Alu 1 110 -7 3 895 345 270 169 31 chr3 40678190 40678320 -118921463 + B1F2 SINE Alu 1 148 -1 3 895 804 121 8 46 chr3 40678435 40678565 -118921218 - B1_Mm SINE Alu -9 138 14 3 895 901 168 28 0 chr3 40678590 40678733 -118921050 + B1_Mus2 SINE Alu 1 147 0 3 895 789 191 262 0 chr3 40678747 40678915 -118920868 + B3 SINE B2 1 212 -4 3 895 922 169 10 80 chr3 40678921 40679120 -118920663 + B2_Mm2 SINE B2 3 187 -8 3 895 1120 61 115 6 chr3 40679526 40679691 -118920092 + L1_Mus3 LINE L1 6438 6620 -18 3 895 491 228 40 0 chr3 40679714 40679815 -118919968 + B1_Mus1 SINE Alu 1 105 -43 3 895 462 171 266 18 chr3 40679979 40680092 -118919691 + B1F1 SINE Alu 1 141 -8 3 895 664 262 42 37 chr3 40680322 40680512 -118919271 + B3A SINE B2 3 193 -5 3 895 357 327 28 0 chr3 40681205 40681396 -118918387 - L1MC LINE L1 -2077 5708 5514 3 895 396 283 88 24 chr3 40681446 40681616 -118918167 - MER2 DNA MER2_type -34 311 131 3 895 522 104 10 20 chr3 40681770 40681868 -118917915 + (GGAA)n Simple_repeat Simple_repeat 3 99 0 3 895 403 268 60 13 chr3 40682136 40682287 -118917496 + MER2 DNA MER2_type 96 253 -92 3 895 1821 122 88 13 chr3 40682289 40682609 -118917174 - RLTR10B2 LTR ERVK 0 365 46 3 895 61130 56 14 12 chr3 40682617 40685643 -118914140 - MMERVK10C-int LTR ERVK 0 7581 4640 3 895 3554 50 0 0 chr3 40685643 40686039 -118913744 + MTA_Mm LTR MaLR 1 396 0 3 895 61130 56 14 12 chr3 40686039 40690579 -118909204 - MMERVK10C-int LTR ERVK -2942 4639 1 3 895 2431 90 60 73 chr3 40690579 40690949 -118908834 - RLTR10B2 LTR ERVK 0 365 1 3 895 371 278 0 22 chr3 40690949 40691041 -118908742 + MER2 DNA MER2_type 250 339 -6 3 895 223 242 197 0 chr3 40692036 40692102 -118907681 - ID4_ SINE ID -1 82 4 3 895 319 284 90 90 chr3 40692461 40692485 -118907298 + B4 SINE B4 67 221 -71 3 895 743 154 53 8 chr3 40692485 40692616 -118907167 + B1_Mur3 SINE Alu 9 145 -4 3 895 518 292 55 14 chr3 40692737 40692883 -118906900 - RSINE1 SINE B4 -12 153 2 3 895 409 204 39 72 chr3 40693186 40693297 -118906486 + PB1D9 SINE Alu 5 149 -1 3 895 253 230 16 47 chr3 40693333 40693397 -118906386 + B1_Mur2 SINE Alu 88 149 0 3 895 216 295 20 146 chr3 40693412 40693467 -118906316 + B1F SINE Alu 18 149 0 3 895 314 245 10 21 chr3 40693467 40693563 -118906220 + ID_B1 SINE B4 130 224 0 3 895 285 152 14 96 chr3 40693656 40693729 -118906054 - B3 SINE B2 0 216 150 3 895 658 187 19 0 chr3 40693925 40694056 -118905727 - B1_Mur2 SINE Alu -1 148 13 3 895 26 50 0 0 chr3 40694387 40694427 -118905356 + AT_rich Low_complexity Low_complexity 1 40 0 3 895 647 146 85 54 chr3 40694562 40694673 -118905110 + B1_Mur1 SINE Alu 3 124 -25 4 895 1842 133 215 13 chr3 40694673 40695068 -118904715 - IAPLTR2_Mm LTR ERVK 0 475 1 4 895 647 146 85 54 chr3 40695068 40695086 -118904697 + B1_Mur1 SINE Alu 125 136 -13 4 895 273 57 0 0 chr3 40695086 40695121 -118904662 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 4 895 344 277 49 49 chr3 40695547 40695691 -118904092 + B1F SINE Alu 1 144 -5 4 895 205 244 0 0 chr3 40695691 40695732 -118904051 + GA-rich Low_complexity Low_complexity 1 41 0 4 895 270 336 115 0 chr3 40695835 40695957 -118903826 + MER58D DNA MER1_type 5 140 -246 4 895 322 243 83 46 chr3 40696019 40696127 -118903656 + MER58D DNA MER1_type 275 386 0 4 895 214 155 213 83 chr3 40699772 40699844 -118899939 - MIRc SINE MIR -97 111 34 4 895 209 95 71 0 chr3 40699962 40700004 -118899779 + T-rich Low_complexity Low_complexity 2 46 0 4 895 236 358 24 12 chr3 40700119 40700201 -118899582 - ID4_ SINE ID 0 83 1 4 895 186 43 0 0 chr3 40700309 40700332 -118899451 + (TG)n Simple_repeat Simple_repeat 1 23 0 4 895 264 100 0 0 chr3 40700332 40700372 -118899411 + (GA)n Simple_repeat Simple_repeat 2 41 0 4 895 539 280 160 27 chr3 40700399 40700586 -118899197 + B3 SINE B2 2 213 -3 4 895 365 215 181 11 chr3 40700792 40700886 -118898897 + PB1D9 SINE Alu 1 110 -10 4 895 207 0 0 0 chr3 40700886 40700909 -118898874 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 4 895 280 308 11 21 chr3 40701335 40701428 -118898355 + B4A SINE B4 1 92 -200 4 895 226 361 34 73 chr3 40701428 40701541 -118898242 + B3A SINE B2 1 198 0 4 895 609 248 43 0 chr3 40701927 40702068 -118897715 + B1_Mur2 SINE Alu 3 149 0 4 895 1630 179 94 12 chr3 40702401 40702741 -118897042 - ORR1D1 LTR MaLR -4 370 3 4 895 636 291 25 6 chr3 40703142 40703301 -118896482 - RSINE1 SINE B4 0 165 4 4 895 4182 52 0 0 chr3 40703347 40703827 -118895956 + L1_Mus1 LINE L1 6088 6567 0 4 895 403 174 104 42 chr3 40703866 40703962 -118895821 + PB1D9 SINE Alu 19 120 0 4 895 354 341 63 81 chr3 40704640 40704924 -118894859 + MLT1E2 LTR MaLR 284 571 -109 4 895 453 211 20 73 chr3 40705029 40705142 -118894641 + PB1D10 SINE Alu 5 109 -8 4 895 221 254 59 15 chr3 40705159 40705227 -118894556 + ID4 SINE ID 4 74 -9 4 895 617 258 67 5 chr3 40706537 40706747 -118893036 + Ricksha DNA MuDR 1624 1846 -1400 4 895 253 287 174 56 chr3 40706906 40707050 -118892733 - Lx5 LINE L1 0 7050 6890 4 895 259 245 86 29 chr3 40707050 40707155 -118892628 - MER65D LTR ERV1 -135 338 228 4 895 276 324 24 143 chr3 40707461 40707587 -118892196 + PB1D7 SINE Alu 3 113 -7 4 895 337 287 53 0 chr3 40707601 40707695 -118892088 + ID_B1 SINE B4 80 178 -46 4 895 762 86 259 0 chr3 40707741 40707857 -118891926 + B1_Mus1 SINE Alu 1 146 -2 4 895 252 0 0 0 chr3 40707865 40707893 -118891890 + (A)n Simple_repeat Simple_repeat 1 28 0 4 895 282 303 30 0 chr3 40707966 40708032 -118891751 - ID4_ SINE ID -14 69 2 4 895 799 194 0 0 chr3 40708117 40708246 -118891537 + B1_Mus1 SINE Alu 20 148 0 4 895 234 128 0 0 chr3 40708248 40708287 -118891496 + (GAAAA)n Simple_repeat Simple_repeat 2 40 0 4 895 302 306 119 36 chr3 40708360 40708553 -118891230 + MIRb SINE MIR 54 262 0 4 895 354 45 0 0 chr3 40708918 40708962 -118890821 + (TG)n Simple_repeat Simple_repeat 2 45 0 4 895 890 255 19 19 chr3 40708980 40709188 -118890595 - B3 SINE B2 -6 210 3 4 895 24 85 0 0 chr3 40709196 40709255 -118890528 + AT_rich Low_complexity Low_complexity 1 59 0 4 895 456 188 0 0 chr3 40710695 40710764 -118889019 + B1_Mur4 SINE Alu 2 70 -80 4 895 660 176 0 0 chr3 40710806 40710937 -118888846 + (TA)n Simple_repeat Simple_repeat 2 132 0 4 895 305 194 118 88 chr3 40710944 40711046 -118888737 + PB1D9 SINE Alu 16 120 0 4 895 692 275 111 85 chr3 40711091 40711292 -118888491 + B4A SINE B4 4 223 -69 4 895 611 234 66 0 chr3 40711292 40711429 -118888354 + B1_Mur2 SINE Alu 3 148 -1 4 895 692 275 111 85 chr3 40711429 40711497 -118888286 + B4A SINE B4 224 280 -12 4 895 28 0 0 0 chr3 40711727 40711755 -118888028 + AT_rich Low_complexity Low_complexity 1 28 0 4 895 529 299 27 16 chr3 40711815 40712002 -118887781 - L1MB7 LINE L1 -113 6071 5883 4 895 728 201 241 0 chr3 40712395 40712569 -118887214 - B3 SINE B2 0 216 1 4 895 758 146 121 15 chr3 40712632 40712764 -118887019 - B1_Mus2 SINE Alu 0 147 2 4 895 887 192 19 90 chr3 40712787 40712999 -118886784 - B3A SINE B2 0 198 2 4 895 223 167 0 0 chr3 40713141 40713183 -118886600 + T-rich Low_complexity Low_complexity 4 45 0 4 895 437 267 9 9 chr3 40713343 40713449 -118886334 - PB1D10 SINE Alu -2 115 10 4 895 1294 102 47 21 chr3 40713870 40714060 -118885723 + B2_Mm2 SINE B2 1 195 0 4 895 21 0 0 0 chr3 40714184 40714205 -118885578 + AT_rich Low_complexity Low_complexity 1 21 0 4 895 468 261 161 0 chr3 40714818 40714948 -118884835 + RSINE1 SINE B4 9 159 -6 4 895 1254 61 0 13 chr3 40714980 40715129 -118884654 + B1_Mus1 SINE Alu 2 148 0 4 895 257 223 5 0 chr3 40715160 40715212 -118884571 + B1_Mur4 SINE Alu 94 147 0 4 895 746 237 46 6 chr3 40715290 40715306 -118884477 - B3 SINE B2 -2 214 199 4 895 186 43 0 0 chr3 40715306 40715329 -118884454 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 4 895 746 237 46 6 chr3 40715329 40715486 -118884297 - B3 SINE B2 -18 198 34 4 895 1245 114 34 0 chr3 40715486 40715661 -118884122 + B2_Mm2 SINE B2 1 181 -14 4 895 427 60 285 9 chr3 40715692 40715806 -118883977 + B2_Mm2 SINE B2 47 195 0 4 895 217 268 0 0 chr3 40715812 40715853 -118883930 - B3 SINE B2 -171 45 5 4 895 198 0 0 0 chr3 40715855 40715877 -118883906 + (TTGG)n Simple_repeat Simple_repeat 2 23 0 4 895 524 314 77 11 chr3 40715934 40716147 -118883636 + MIRb SINE MIR 3 236 -32 4 895 469 186 278 17 chr3 40716295 40716410 -118883373 + B1F2 SINE Alu 3 147 -2 4 895 394 308 0 41 chr3 40716740 40716862 -118882921 + PB1D10 SINE Alu 1 117 0 4 895 394 286 25 0 chr3 40717095 40717214 -118882569 + MIR SINE MIR 53 174 -88 4 895 239 256 0 0 chr3 40717387 40717426 -118882357 + PB1D10 SINE Alu 2 40 -77 4 895 468 279 49 42 chr3 40717440 40717582 -118882201 - B1F1 SINE Alu 0 149 7 4 895 316 311 0 0 chr3 40717589 40717679 -118882104 + PB1D10 SINE Alu 27 116 -1 4 895 446 272 99 42 chr3 40717784 40717926 -118881857 - RSINE1 SINE B4 -8 157 8 4 895 297 0 0 0 chr3 40717970 40718003 -118881780 + (TG)n Simple_repeat Simple_repeat 2 34 0 4 895 429 324 140 6 chr3 40718039 40718210 -118881573 - B4A SINE B4 -15 277 84 4 895 983 197 40 71 chr3 40718248 40718326 -118881457 - ID_B1 SINE B4 0 224 148 4 895 1332 112 21 0 chr3 40718326 40718513 -118881270 - B2_Mm2 SINE B2 -4 191 1 4 895 983 197 40 71 chr3 40718513 40718658 -118881125 - ID_B1 SINE B4 -77 147 8 4 895 709 215 15 0 chr3 40719036 40719166 -118880617 + B1_Mur4 SINE Alu 2 133 -17 4 895 795 101 0 0 chr3 40719173 40719292 -118880491 + (TA)n Simple_repeat Simple_repeat 2 120 0 4 895 752 58 36 47 chr3 40719367 40719484 -118880299 - B1_Mus1 SINE Alu 0 148 39 4 895 308 259 54 76 chr3 40719419 40719488 -118880295 - MT2B LTR ERVL -344 257 186 4 895 1420 68 6 28 chr3 40719488 40719669 -118880114 - B2_Mm2 SINE B2 -17 178 2 4 895 308 259 54 76 chr3 40719669 40719691 -118880092 - MT2B LTR ERVL -416 185 168 4 895 466 304 81 0 chr3 40720111 40720259 -118879524 + RSINE1 SINE B4 4 163 -2 4 895 312 27 0 0 chr3 40720299 40720336 -118879447 + (GA)n Simple_repeat Simple_repeat 1 37 0 4 895 599 259 30 22 chr3 40720370 40720504 -118879279 + B1F1 SINE Alu 1 135 -14 4 895 298 109 0 0 chr3 40720939 40720985 -118878798 - B3 SINE B2 -170 46 1 4 895 373 225 38 0 chr3 40721110 40721190 -118878593 + B1F SINE Alu 67 149 0 4 895 308 208 385 28 chr3 40721217 40721326 -118878457 + B1_Mur2 SINE Alu 2 149 0 4 895 248 333 66 11 chr3 40721346 40721437 -118878346 + PB1D10 SINE Alu 2 97 -20 4 895 1158 115 157 0 chr3 40721449 40721640 -118878143 - Lx2 LINE L1 0 6997 6777 4 895 2809 103 0 33 chr3 40721641 40722061 -118877722 - Lx2 LINE L1 -353 6644 6239 4 895 1201 88 0 0 chr3 40722283 40722442 -118877341 + B2_Mm2 SINE B2 2 160 -35 4 895 1173 96 0 0 chr3 40722836 40722982 -118876801 + B1_Mus2 SINE Alu 2 147 0 4 895 369 43 0 0 chr3 40722982 40723029 -118876754 + (GAAA)n Simple_repeat Simple_repeat 2 48 0 4 895 330 257 19 28 chr3 40723029 40723137 -118876646 + L1MB8 LINE L1 6076 6184 0 4 895 575 159 57 165 chr3 40723461 40723619 -118876164 - B1_Mus1 SINE Alu 0 148 8 4 895 263 291 126 9 chr3 40723631 40723742 -118876041 - RLTR33 LTR ERVK -85 593 470 4 895 403 149 0 75 chr3 40723796 40723876 -118875907 - RLTR19C LTR ERVK -400 106 33 4 895 498 223 36 0 chr3 40723914 40724026 -118875757 - MERVL-int LTR ERVL -1127 4358 4243 4 895 1034 154 233 0 chr3 40724024 40724264 -118875519 + ERVL-int LTR ERVL 4451 4746 -1011 4 895 1168 96 0 0 chr3 40724357 40724503 -118875280 + B1_Mus2 SINE Alu 2 147 0 4 895 736 141 131 15 chr3 40724601 40724731 -118875052 + B1_Mur3 SINE Alu 5 149 0 4 895 224 30 30 0 chr3 40724733 40724766 -118875017 + (CAAAAA)n Simple_repeat Simple_repeat 2 35 0 4 895 606 218 18 0 chr3 40724946 40725056 -118874727 + PB1D9 SINE Alu 2 113 -7 4 895 180 0 0 0 chr3 40725217 40725237 -118874546 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 4 895 212 327 0 0 chr3 40725368 40725423 -118874360 - B1F SINE Alu -94 55 1 4 895 306 274 69 0 chr3 40725995 40726097 -118873686 + PB1D10 SINE Alu 2 110 -7 5 895 445 154 126 63 chr3 40726107 40726218 -118873565 + PB1D9 SINE Alu 2 119 -1 5 895 512 252 28 0 chr3 40726276 40726383 -118873400 + PB1D10 SINE Alu 1 110 -7 5 895 372 262 169 31 chr3 40726407 40726537 -118873246 + B1F2 SINE Alu 1 148 -1 5 895 812 121 8 46 chr3 40726602 40726732 -118873051 - B1_Mm SINE Alu -9 138 14 5 895 927 179 14 0 chr3 40726757 40726902 -118872881 + B1_Mus2 SINE Alu 1 147 0 5 895 760 188 285 0 chr3 40726916 40727081 -118872702 + B3 SINE B2 1 212 -4 5 895 910 165 76 43 chr3 40727087 40727271 -118872512 + B2_Mm2 SINE B2 3 192 -3 5 895 1442 62 21 5 chr3 40727693 40727887 -118871896 + L1_Mus3 LINE L1 6438 6634 -4 5 895 664 147 29 0 chr3 40727905 40728007 -118871776 + B1_Mus1 SINE Alu 1 105 -43 5 895 552 164 53 69 chr3 40728021 40728152 -118871631 + B1_Mur3 SINE Alu 21 149 0 5 895 5955 36 0 13 chr3 40728182 40728888 -118870895 - L1Md_T LINE L1 0 6582 5908 5 895 1243 54 0 13 chr3 40729099 40729248 -118870535 - B1_Mus1 SINE Alu -1 147 1 5 895 423 251 34 11 chr3 40729294 40729448 -118870335 - Lx7 LINE L1 -2 7694 7566 5 895 812 137 19 70 chr3 40729448 40729605 -118870178 + B1_Mur4 SINE Alu 1 149 -1 5 895 362 277 85 25 chr3 40729605 40729650 -118870133 - Lx7 LINE L1 -161 7299 7249 5 895 997 244 106 37 chr3 40729700 40730105 -118869678 - Lx7 LINE L1 -356 7340 6908 5 895 448 152 53 21 chr3 40730131 40730225 -118869558 - B1_Mus1 SINE Alu -12 136 40 5 895 2480 128 48 14 chr3 40730301 40730720 -118869063 - RLTR44B LTR ERVK -16 433 1 5 895 7690 39 40 1 chr3 40730720 40732334 -118867449 - RLTR44-int LTR ERVK 0 2812 1136 5 895 2125 55 9 38 chr3 40732330 40732650 -118867133 - RLTR44-int LTR ERVK -1834 978 612 5 895 883 153 57 0 chr3 40732646 40732803 -118866980 - RLTR44-int LTR ERVK -2646 166 1 5 895 2492 135 59 12 chr3 40732814 40733235 -118866548 - RLTR44B LTR ERVK -8 441 1 5 895 295 216 27 0 chr3 40733422 40733496 -118866287 - RLTR44-int LTR ERVK -2567 245 170 5 895 268 242 0 57 chr3 40733735 40733805 -118865978 + B4A SINE B4 85 150 -142 5 895 260 290 26 78 chr3 40733736 40733852 -118865931 + B1F1 SINE Alu 1 110 -7 5 895 404 286 226 15 chr3 40734200 40734252 -118865531 - MER68 LTR ERVL -7 556 504 5 895 219 69 0 0 chr3 40734252 40734281 -118865502 + (CA)n Simple_repeat Simple_repeat 2 30 0 5 895 404 286 226 15 chr3 40734281 40734423 -118865360 - MER68 LTR ERVL -60 503 321 5 895 308 322 117 63 chr3 40734483 40734705 -118865078 - MER68 LTR ERVL -320 243 10 5 895 231 167 0 0 chr3 40734715 40734757 -118865026 + (TAA)n Simple_repeat Simple_repeat 1 42 0 5 895 414 172 0 0 chr3 40734942 40735006 -118864777 + MurSatRep1 Unknown Unknown 220 283 -1854 5 895 352 250 20 20 chr3 40735146 40735244 -118864539 - RLTR14 LTR ERV1 -282 100 3 5 895 393 22 0 0 chr3 40735343 40735389 -118864394 + (TG)n Simple_repeat Simple_repeat 1 46 0 5 895 324 0 0 0 chr3 40735422 40735458 -118864325 + (TG)n Simple_repeat Simple_repeat 1 36 0 5 895 788 212 7 0 chr3 40735458 40735604 -118864179 + B1_Mm SINE Alu 1 147 0 5 895 355 239 136 22 chr3 40735746 40735948 -118863835 - L1MA4 LINE L1 -359 5941 5688 5 895 278 264 50 117 chr3 40735952 40735966 -118863817 + MT2B LTR ERVL 152 157 -444 5 895 564 239 54 27 chr3 40735966 40736078 -118863705 + B1_Mur1 SINE Alu 1 115 -34 5 895 430 295 96 24 chr3 40736078 40736091 -118863692 + B4 SINE B4 86 219 -73 5 895 906 113 30 0 chr3 40736471 40736604 -118863179 - B1_Mus2 SINE Alu 0 147 11 5 895 649 266 66 4 chr3 40736736 40736993 -118862790 - L1MB3 LINE L1 -31 6152 5880 5 895 313 302 62 0 chr3 40737035 40737131 -118862652 + PB1D10 SINE Alu 1 102 -15 5 895 497 243 27 9 chr3 40737193 40737305 -118862478 - PB1D10 SINE Alu -3 114 1 5 895 1125 202 5 19 chr3 40737886 40738098 -118861685 - B3 SINE B2 -1 215 7 5 895 619 244 123 12 chr3 40738170 40738332 -118861451 + ID_B1 SINE B4 39 218 -6 5 895 745 279 224 9 chr3 40738395 40738623 -118861160 - B4A SINE B4 -2 290 14 5 895 265 186 254 14 chr3 40738626 40738697 -118861086 - PB1D10 SINE Alu -9 108 21 5 895 656 219 67 24 chr3 40739811 40739989 -118859794 + ID_B1 SINE B4 29 222 -70 5 895 354 316 24 72 chr3 40739990 40740157 -118859626 + B4 SINE B4 87 245 -47 5 895 1347 105 22 0 chr3 40740671 40740852 -118858931 - B2_Mm2 SINE B2 -10 185 1 5 895 500 157 131 47 chr3 40740950 40741057 -118858726 + PB1D9 SINE Alu 5 120 0 5 895 239 235 206 0 chr3 40741089 40741191 -118858592 + ID_B1 SINE B4 76 198 -26 5 895 370 144 244 0 chr3 40741102 40741192 -118858591 + B1_Mus1 SINE Alu 9 120 -28 5 895 290 342 8 49 chr3 40741190 40741202 -118858581 + ID_B1 SINE B4 83 197 -24 5 895 413 271 28 9 chr3 40741202 40741310 -118858473 + B1F2 SINE Alu 10 119 -30 5 895 510 190 163 19 chr3 40741459 40741598 -118858185 + RMER10A LTR ERVL 5 152 -246 5 895 507 33 0 0 chr3 40741601 40741662 -118858121 + (CA)n Simple_repeat Simple_repeat 2 62 0 5 895 25 51 0 0 chr3 40741978 40742017 -118857766 + AT_rich Low_complexity Low_complexity 1 39 0 5 895 235 26 24 49 chr3 40742060 40742101 -118857682 + (TTTTG)n Simple_repeat Simple_repeat 5 44 0 5 895 327 266 31 88 chr3 40742450 40742691 -118857092 + ID_B1 SINE B4 43 222 -70 5 895 534 208 92 0 chr3 40742574 40742694 -118857089 + B1_Mus2 SINE Alu 15 145 -2 5 895 617 178 20 0 chr3 40742699 40742800 -118856983 - B1_Mur1 SINE Alu -5 144 42 5 895 241 143 0 125 chr3 40742750 40742806 -118856977 - 4.5SRNA scRNA scRNA -6 88 40 5 895 510 196 60 0 chr3 40742811 40742944 -118856839 + (CCTG)n Simple_repeat Simple_repeat 3 143 0 5 895 231 250 75 100 chr3 40742944 40743064 -118856719 + LTR48 LTR ERV1 108 224 -563 5 895 631 252 39 43 chr3 40743036 40743243 -118856540 - Cheshire DNA MER1_type -207 2213 2008 5 895 404 198 18 135 chr3 40743240 40743351 -118856432 - B1_Mus1 SINE Alu -21 127 30 5 895 297 323 82 8 chr3 40743418 40743544 -118856239 - Cheshire DNA MER1_type -2122 298 163 5 895 727 189 15 30 chr3 40743544 40743675 -118856108 + B3 SINE B2 2 130 -86 5 895 226 190 36 60 chr3 40743729 40743813 -118855970 - Cheshire DNA MER1_type -2234 186 105 5 895 247 191 21 0 chr3 40743812 40743859 -118855924 + ID4_ SINE ID 25 72 -11 5 895 275 229 82 0 chr3 40744070 40744131 -118855652 + ID4 SINE ID 2 67 -16 5 895 210 71 0 0 chr3 40744139 40744167 -118855616 + (TTAA)n Simple_repeat Simple_repeat 2 29 0 5 895 1529 74 5 0 chr3 40744270 40744459 -118855324 - B2_Mm1t SINE B2 0 193 4 5 895 253 157 78 0 chr3 40744462 40744513 -118855270 - Charlie1a DNA MER1_type -665 790 736 5 895 549 266 48 38 chr3 40744515 40744720 -118855063 + B4A SINE B4 2 206 -86 5 895 336 83 0 0 chr3 40744750 40744798 -118854985 + (CA)n Simple_repeat Simple_repeat 2 49 0 5 895 965 240 69 12 chr3 40744907 40745237 -118854546 + L1M2 LINE L1 4510 4876 -1267 5 895 476 316 25 25 chr3 40745237 40745396 -118854387 + RSINE1 SINE B4 3 161 -4 5 895 450 266 18 0 chr3 40745546 40745655 -118854128 + PB1D10 SINE Alu 5 115 -2 5 895 962 213 13 58 chr3 40745669 40745893 -118853890 + B3 SINE B2 3 216 0 5 895 30 45 0 0 chr3 40745946 40745990 -118853793 + AT_rich Low_complexity Low_complexity 1 44 0 5 895 1130 209 29 19 chr3 40746023 40746233 -118853550 - B3 SINE B2 -2 214 3 5 895 418 288 107 45 chr3 40746241 40746419 -118853364 - B3A SINE B2 -1 197 9 5 895 1896 100 53 11 chr3 40746398 40746680 -118853103 - ORR1A2 LTR MaLR -33 294 1 5 895 254 257 81 0 chr3 40746680 40746746 -118853037 + PB1D10 SINE Alu 39 110 -7 5 895 1309 7 0 40 chr3 40746961 40747113 -118852670 + B1_Mm SINE Alu 1 146 -1 5 895 1064 90 28 7 chr3 40747181 40747326 -118852457 - B1_Mur4 SINE Alu -1 149 2 5 895 2135 77 62 13 chr3 40748032 40748336 -118851447 + ORR1A2 LTR MaLR 1 319 -8 5 895 546 295 16 0 chr3 40748467 40748596 -118851187 + ID_B1 SINE B4 82 212 -12 5 895 371 281 50 50 chr3 40748853 40748973 -118850810 - PB1 SINE Alu -5 122 3 5 895 273 301 111 24 chr3 40749084 40749210 -118850573 - LTR33 LTR ERVL -4 511 375 5 895 484 312 20 27 chr3 40749435 40749583 -118850200 + B1F SINE Alu 2 148 -1 5 895 222 114 68 0 chr3 40749584 40749628 -118850155 + A-rich Low_complexity Low_complexity 1 47 0 5 895 645 59 237 0 chr3 40749691 40749826 -118849957 - B2_Mm2 SINE B2 -28 167 1 5 895 744 138 115 0 chr3 40749965 40750095 -118849688 + B1_Mus1 SINE Alu 4 148 0 5 895 192 77 0 0 chr3 40750100 40750126 -118849657 + (GGA)n Simple_repeat Simple_repeat 2 27 0 5 895 961 143 7 0 chr3 40750364 40750504 -118849279 - B1_Mm SINE Alu -6 141 1 5 895 488 289 29 76 chr3 40750623 40750795 -118848988 + B4A SINE B4 129 292 0 5 895 1238 58 0 0 chr3 40750926 40751065 -118848718 + B1_Mus2 SINE Alu 1 139 -8 5 895 297 0 0 0 chr3 40751065 40751098 -118848685 + (TAAA)n Simple_repeat Simple_repeat 2 34 0 5 895 771 152 24 137 chr3 40751212 40751380 -118848403 + B1_Mur4 SINE Alu 1 149 -1 5 895 243 42 0 77 chr3 40751385 40751437 -118848346 + (CAAAA)n Simple_repeat Simple_repeat 3 50 0 5 895 1422 187 171 26 chr3 40751910 40752295 -118847488 + RMER10A LTR ERVL 2 442 0 5 895 379 286 181 7 chr3 40752314 40752469 -118847314 + B3A SINE B2 1 182 -16 5 895 327 235 140 20 chr3 40752512 40752612 -118847171 + B1_Mus1 SINE Alu 2 113 -35 5 895 343 325 17 25 chr3 40752685 40752805 -118846978 + B1_Mur4 SINE Alu 1 119 -31 5 895 393 102 0 0 chr3 40754374 40754433 -118845350 + (CCG)n Simple_repeat Simple_repeat 2 60 0 5 895 279 303 0 57 chr3 40755598 40755703 -118844080 - PB1D10 SINE Alu 0 117 19 5 895 210 24 45 45 chr3 40755984 40756028 -118843755 + (TTTG)n Simple_repeat Simple_repeat 1 44 0 5 895 1170 75 0 7 chr3 40756030 40756178 -118843605 - B1_Mm SINE Alu 0 147 1 6 895 264 224 35 0 chr3 40756253 40756311 -118843472 - ID SINE ID -154 70 11 6 895 255 262 15 15 chr3 40756467 40756533 -118843250 + PB1D10 SINE Alu 52 117 0 6 895 352 275 64 70 chr3 40756481 40756535 -118843248 + ID_B1 SINE B4 45 215 -9 6 895 578 220 25 0 chr3 40756535 40756653 -118843130 + B1_Mus1 SINE Alu 19 139 -9 6 895 313 266 306 23 chr3 40757132 40757265 -118842518 + B3A SINE B2 6 176 -40 6 895 426 319 13 19 chr3 40757324 40757455 -118842328 + PB1 SINE Alu 1 124 -24 6 895 1171 70 28 0 chr3 40757788 40757931 -118841852 - B1_Mus1 SINE Alu 0 148 2 6 895 576 236 75 14 chr3 40758105 40758251 -118841532 - RSINE1 SINE B4 -7 158 4 6 895 1060 106 42 0 chr3 40758429 40758571 -118841212 + B1_Mus1 SINE Alu 1 148 0 6 895 690 153 171 39 chr3 40758781 40758910 -118840873 - B1_Mur1 SINE Alu -3 146 1 6 895 207 0 0 0 chr3 40758940 40758963 -118840820 + (T)n Simple_repeat Simple_repeat 1 23 0 6 895 25 31 0 0 chr3 40759020 40759052 -118840731 + AT_rich Low_complexity Low_complexity 1 32 0 6 895 1008 127 28 0 chr3 40759290 40759432 -118840351 + B1_Mus2 SINE Alu 2 147 0 6 895 556 214 36 0 chr3 40759487 40759599 -118840184 - ID_B1 SINE B4 -5 219 104 6 895 343 265 117 10 chr3 40759891 40759994 -118839789 - PB1D10 SINE Alu -1 116 3 6 895 1276 168 23 23 chr3 40760005 40760219 -118839564 - B3 SINE B2 -2 214 1 6 895 3057 182 108 26 chr3 40760306 40760865 -118838918 - Lx9 LINE L1 0 7644 7037 6 895 210 37 0 0 chr3 40760865 40760892 -118838891 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 6 895 1115 67 15 0 chr3 40760894 40761028 -118838755 - B1_Mus2 SINE Alu -11 136 1 6 895 2661 103 0 21 chr3 40761037 40761425 -118838358 - L1Md_F2 LINE L1 0 6582 6203 6 895 3057 182 108 26 chr3 40761425 40761584 -118838199 - Lx9 LINE L1 -617 7027 6854 6 895 23 0 0 0 chr3 40761751 40761774 -118838009 + AT_rich Low_complexity Low_complexity 1 23 0 6 895 269 172 85 17 chr3 40761777 40761836 -118837947 + B1_Mus1 SINE Alu 1 63 -85 6 895 365 0 22 0 chr3 40761836 40761881 -118837902 + (GA)n Simple_repeat Simple_repeat 1 46 0 6 895 313 305 109 8 chr3 40761943 40762062 -118837721 + B1F2 SINE Alu 11 141 -8 6 895 3295 194 139 147 chr3 40762156 40763195 -118836588 - RMER1B Other Other 0 1066 37 6 895 30 0 0 0 chr3 40763241 40763271 -118836512 + AT_rich Low_complexity Low_complexity 1 30 0 6 111 556 206 8 42 chr3 40763272 40763403 -118836380 - B1_Mur4 SINE Alu 0 150 20 6 896 204 40 0 0 chr3 40763428 40763453 -118836330 + (T)n Simple_repeat Simple_repeat 1 25 0 6 896 735 164 8 15 chr3 40763453 40763583 -118836200 - B1_Mus2 SINE Alu 0 147 19 6 896 558 237 118 7 chr3 40763878 40764031 -118835752 + MTD LTR MaLR 222 391 -28 6 896 1196 68 7 14 chr3 40764054 40764202 -118835581 - B1_Mus2 SINE Alu 0 147 1 6 896 802 212 174 0 chr3 40764228 40764412 -118835371 - B3 SINE B2 0 216 1 6 896 1200 115 29 0 chr3 40764571 40764745 -118835038 + B2_Mm1t SINE B2 1 179 -14 6 896 476 101 355 9 chr3 40764796 40764906 -118834877 + B2_Mm2 SINE B2 47 194 -1 6 896 666 178 145 15 chr3 40765142 40765273 -118834510 - B1_Mus1 SINE Alu 0 148 1 6 896 595 217 38 0 chr3 40765773 40765879 -118833904 - PB1D9 SINE Alu -10 110 1 6 896 250 339 152 0 chr3 40765885 40766003 -118833780 - ID_B1 SINE B4 -5 219 84 6 896 21 0 0 0 chr3 40766157 40766178 -118833605 + AT_rich Low_complexity Low_complexity 1 21 0 6 896 911 217 111 0 chr3 40766566 40766755 -118833028 - B3 SINE B2 -6 210 1 6 896 219 69 0 0 chr3 40766758 40766787 -118832996 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 6 896 675 171 118 44 chr3 40766797 40766932 -118832851 - B1_Mus2 SINE Alu -1 146 2 6 896 266 204 218 39 chr3 40767166 40767345 -118832438 - L1MD LINE L1 -2226 5769 5559 6 896 550 199 28 103 chr3 40767396 40767590 -118832193 - B3 SINE B2 0 195 15 6 896 243 0 0 0 chr3 40768616 40768643 -118831140 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 6 896 1197 48 0 27 chr3 40768643 40768781 -118831002 - B1_Mm SINE Alu -9 138 2 6 896 565 277 39 0 chr3 40768982 40769112 -118830671 - RSINE1 SINE B4 -24 141 7 6 896 3362 53 5 2 chr3 40769178 40769575 -118830208 - L1_Mus2 LINE L1 -1 6565 6168 6 896 384 269 18 36 chr3 40769654 40769766 -118830017 - PB1D10 SINE Alu -5 112 3 6 896 693 307 154 12 chr3 40769766 40770096 -118829687 - MTE2b LTR MaLR 0 379 3 6 896 585 263 15 0 chr3 40770100 40770233 -118829550 + B1_Mur2 SINE Alu 15 149 0 6 896 225 191 43 0 chr3 40770236 40770283 -118829500 + GA-rich Low_complexity Low_complexity 2 50 0 6 896 400 296 0 20 chr3 40770307 40770407 -118829376 - PB1D10 SINE Alu -7 110 13 6 896 257 366 0 0 chr3 40770356 40770427 -118829356 - B4A SINE B4 -144 148 78 6 896 654 242 320 40 chr3 40770640 40770868 -118828915 - B4A SINE B4 0 292 1 6 896 1263 35 7 20 chr3 40770962 40771110 -118828673 + B1_Mus2 SINE Alu 2 147 0 6 896 624 191 150 8 chr3 40771616 40771743 -118828040 - B1_Mus2 SINE Alu -2 145 1 6 896 282 250 12 62 chr3 40771762 40771843 -118827940 - PB1D7 SINE Alu -10 110 34 6 896 534 230 8 31 chr3 40772009 40772139 -118827644 - B1_Mus1 SINE Alu 0 148 22 6 896 355 220 179 57 chr3 40772243 40772349 -118827434 - PB1D9 SINE Alu 0 120 2 6 896 512 260 129 27 chr3 40772542 40772728 -118827055 + B3 SINE B2 1 205 -11 6 896 220 271 0 17 chr3 40772924 40772940 -118826843 + ID_B1 SINE B4 68 126 -98 6 896 244 159 0 0 chr3 40772940 40772984 -118826799 + PB1D9 SINE Alu 2 45 -75 6 896 321 311 19 19 chr3 40773382 40773487 -118826296 + PB1D7 SINE Alu 9 113 -7 6 896 381 233 12 92 chr3 40773498 40773626 -118826157 + PB1D9 SINE Alu 1 120 0 6 896 284 100 40 0 chr3 40773649 40773699 -118826084 + Lx8 LINE L1 7420 7471 -2 6 896 24 0 0 0 chr3 40774720 40774744 -118825039 + AT_rich Low_complexity Low_complexity 1 24 0 6 896 318 248 78 9 chr3 40774786 40774892 -118824891 + B1F SINE Alu 1 108 -42 6 896 189 0 0 0 chr3 40775385 40775406 -118824377 + (T)n Simple_repeat Simple_repeat 1 21 0 6 896 391 273 60 40 chr3 40776595 40776744 -118823039 + RSINE1 SINE B4 3 154 -11 6 896 294 178 24 0 chr3 40776842 40776908 -118822875 + PB1D7 SINE Alu 57 127 0 6 896 272 82 0 75 chr3 40777603 40777656 -118822127 + T-rich Low_complexity Low_complexity 2 50 0 6 896 201 74 0 0 chr3 40777683 40777710 -118822073 + (TCTCTG)n Simple_repeat Simple_repeat 3 29 0 6 896 301 301 131 7 chr3 40777755 40777892 -118821891 - L1ME2 LINE L1 -275 5889 5736 6 896 396 183 56 0 chr3 40778030 40778101 -118821682 - B1F SINE Alu -59 90 16 6 896 195 246 100 50 chr3 40778166 40778226 -118821557 + MIRb SINE MIR 49 111 -157 6 896 387 0 0 0 chr3 40778441 40778484 -118821299 + (TG)n Simple_repeat Simple_repeat 2 44 0 6 896 207 195 0 24 chr3 40778563 40778605 -118821178 + CT-rich Low_complexity Low_complexity 3 43 0 6 896 773 167 7 7 chr3 40778606 40778751 -118821032 - B1_Mur4 SINE Alu 0 150 6 6 896 413 245 49 98 chr3 40778651 40778814 -118820969 - MT2B LTR ERVL -344 257 103 6 896 288 267 0 0 chr3 40778999 40779059 -118820724 - B1F1 SINE Alu -89 60 1 6 896 1149 259 64 42 chr3 40779098 40779593 -118820190 - RLTR20B3 LTR ERVK -15 562 7 6 896 180 111 0 0 chr3 40779730 40779757 -118820026 + (A)n Simple_repeat Simple_repeat 1 27 0 6 896 437 286 23 68 chr3 40779811 40780032 -118819751 - ID_B1 SINE B4 -10 214 4 6 896 601 261 21 63 chr3 40780141 40780284 -118819499 - B1F2 SINE Alu 0 149 13 6 896 576 285 12 19 chr3 40781787 40781948 -118817835 - RSINE1 SINE B4 -4 161 2 6 896 2597 265 177 51 chr3 40782068 40783391 -118816392 + MTEb-int LTR MaLR 2 1576 -4 6 896 1415 153 237 7 chr3 40783395 40783700 -118816083 + MTEb LTR MaLR 1 376 -3 6 896 23 33 0 0 chr3 40784180 40784210 -118815573 + AT_rich Low_complexity Low_complexity 1 30 0 6 896 1610 35 5 0 chr3 40785446 40785643 -118814140 - L1_Mus1 LINE L1 0 6567 6370 6 896 477 240 144 17 chr3 40785666 40785840 -118813943 + B3A SINE B2 2 197 -1 6 896 1153 69 7 0 chr3 40786031 40786176 -118813607 + B1_Mus2 SINE Alu 2 147 0 6 896 198 0 0 0 chr3 40786183 40786205 -118813578 + (CAAA)n Simple_repeat Simple_repeat 3 24 0 6 896 394 270 41 10 chr3 40786417 40786531 -118813252 + B1_Mur1 SINE Alu 2 120 0 6 896 2927 109 42 2 chr3 40787165 40787642 -118812141 - Lx3_Mus LINE L1 -31 6978 6483 6 896 640 216 136 16 chr3 40787723 40787907 -118811876 - B3 SINE B2 -10 206 1 6 896 1848 49 0 0 chr3 40788210 40788434 -118811349 - L1_Mus1 LINE L1 0 6567 6344 6 896 4563 45 5 0 chr3 40788434 40789010 -118810773 + L1_Mus1 LINE L1 5793 6371 -196 6 896 679 134 0 0 chr3 40789638 40789735 -118810048 - B3 SINE B2 -111 105 9 6 896 235 189 100 75 chr3 40790534 40790614 -118809169 + MT2B LTR ERVL 169 250 -351 6 896 511 114 124 11 chr3 40790547 40790636 -118809147 + PB1D9 SINE Alu 22 120 0 6 896 223 204 23 0 chr3 40790670 40790714 -118809069 + T-rich Low_complexity Low_complexity 5 49 0 6 896 816 74 190 0 chr3 40790714 40790835 -118808948 - B1_Mm SINE Alu 0 147 4 7 896 367 250 25 0 chr3 40790859 40790939 -118808844 - ID4 SINE ID -1 82 1 7 896 251 251 81 71 chr3 40791255 40791335 -118808448 - B3A SINE B2 -108 87 2 7 896 583 264 45 30 chr3 40792067 40792200 -118807583 - RSINE1 SINE B4 -28 137 3 7 896 486 80 45 11 chr3 40792308 40792396 -118807387 + (TCTCC)n Simple_repeat Simple_repeat 1 91 0 7 896 520 232 45 53 chr3 40792396 40792528 -118807255 - B3 SINE B2 -38 178 48 7 896 799 292 105 0 chr3 40792541 40792747 -118807036 + B4A SINE B4 3 230 -62 7 896 723 232 136 5 chr3 40792747 40792938 -118806845 + B3 SINE B2 1 216 0 7 896 33 0 0 0 chr3 40793528 40793561 -118806222 + AT_rich Low_complexity Low_complexity 1 33 0 7 896 438 20 0 0 chr3 40793671 40793722 -118806061 + (TG)n Simple_repeat Simple_repeat 2 52 0 7 896 27 0 0 0 chr3 40793832 40793859 -118805924 + AT_rich Low_complexity Low_complexity 1 27 0 7 896 182 283 38 0 chr3 40794019 40794072 -118805711 + L2 LINE L2 1285 1339 -2080 7 896 786 151 24 8 chr3 40794994 40795121 -118804662 - B3 SINE B2 -86 130 2 7 896 576 290 41 0 chr3 40795202 40795347 -118804436 - RSINE1 SINE B4 -14 151 1 7 896 312 272 85 34 chr3 40795434 40795552 -118804231 + PB1 SINE Alu 2 125 -2 7 896 260 376 65 36 chr3 40796002 40796170 -118803613 - L2 LINE L2 -589 2830 2658 7 896 672 236 40 0 chr3 40796623 40796771 -118803012 + U1 snRNA snRNA 10 163 -2 7 896 453 281 122 20 chr3 40796885 40796947 -118802836 + B3 SINE B2 1 76 -140 7 896 638 0 0 0 chr3 40796947 40797026 -118802757 + L1Md_A LINE L1 6504 6582 0 7 896 453 281 122 20 chr3 40797026 40797159 -118802624 + B3 SINE B2 77 216 0 7 896 216 203 0 48 chr3 40797192 40797254 -118802529 + (CATATA)n Simple_repeat Simple_repeat 4 62 0 7 896 273 250 76 85 chr3 40797565 40797683 -118802100 + PB1D9 SINE Alu 2 118 -2 7 896 22 0 0 0 chr3 40797882 40797904 -118801879 + AT_rich Low_complexity Low_complexity 1 22 0 7 896 219 88 0 0 chr3 40798108 40798142 -118801641 + (TG)n Simple_repeat Simple_repeat 2 35 0 7 896 359 243 117 86 chr3 40798310 40798567 -118801216 + L1MB8 LINE L1 4747 5011 -1135 7 896 555 282 153 35 chr3 40798581 40799202 -118800581 + L1MC1 LINE L1 5345 6038 -295 7 896 345 329 47 0 chr3 40799280 40799429 -118800354 + L1MC1 LINE L1 6178 6333 0 7 896 280 171 55 41 chr3 40799729 40799802 -118799981 + L1MB8 LINE L1 5608 5681 -497 7 896 1765 136 220 56 chr3 40799803 40800199 -118799584 - RMER6B LTR ERVK 0 461 1 7 896 321 282 76 49 chr3 40800369 40800593 -118799190 + L1MB8 LINE L1 5912 6141 -37 7 896 256 312 128 119 chr3 40800631 40800740 -118799043 + PB1 SINE Alu 9 118 -9 7 896 1279 98 17 0 chr3 40800878 40801052 -118798731 + B2_Mm2 SINE B2 1 177 -18 7 896 6493 136 107 2 chr3 40801055 40803025 -118796758 + Lx2B LINE L1 4376 6565 -435 7 896 590 270 60 13 chr3 40803307 40803457 -118796326 - RSINE1 SINE B4 0 165 9 7 896 647 284 88 0 chr3 40803976 40804180 -118795603 - ID_B1 SINE B4 0 224 3 7 896 663 241 68 47 chr3 40804221 40804316 -118795467 - B3 SINE B2 -3 213 114 7 896 1242 174 201 6 chr3 40804316 40804629 -118795154 + ORR1D1 LTR MaLR 1 374 0 7 896 663 241 68 47 chr3 40804629 40804725 -118795058 - B3 SINE B2 -103 113 18 7 896 656 269 76 76 chr3 40805491 40805781 -118794002 + MTE2a LTR MaLR 70 359 -20 7 896 484 314 97 64 chr3 40806293 40806777 -118793006 - L1MC4 LINE L1 -17 8025 7526 7 896 544 298 6 53 chr3 40807316 40807486 -118792297 - RSINE1 SINE B4 0 165 4 7 896 247 85 64 0 chr3 40807508 40807555 -118792228 - B2_Mm2 SINE B2 -8 187 138 7 896 1136 104 12 0 chr3 40807666 40807830 -118791953 - B2_Mm1t SINE B2 -27 166 1 7 896 2394 134 13 40 chr3 40807877 40808048 -118791735 - ORR1B1 LTR MaLR -8 386 228 7 896 1327 93 27 0 chr3 40808048 40808231 -118791552 - B2_Mm2 SINE B2 -6 189 2 7 896 2394 134 13 40 chr3 40808231 40808456 -118791327 - ORR1B1 LTR MaLR -167 227 1 7 896 498 17 0 0 chr3 40808468 40808527 -118791256 + (TG)n Simple_repeat Simple_repeat 1 59 0 7 896 250 337 12 0 chr3 40809370 40809456 -118790327 + CT-rich Low_complexity Low_complexity 2 88 0 7 896 259 303 40 20 chr3 40809456 40809557 -118790226 - PB1D10 SINE Alu -14 103 1 7 896 1127 73 0 0 chr3 40809706 40809856 -118789927 + B2_Mm2 SINE B2 3 152 -43 7 896 180 111 0 0 chr3 40809856 40809883 -118789900 + (T)n Simple_repeat Simple_repeat 1 27 0 7 896 238 29 0 0 chr3 40809918 40809952 -118789831 - B3 SINE B2 -182 34 1 7 896 305 310 84 15 chr3 40811386 40811517 -118788266 + L1MEg LINE L1 1426 1565 -4519 7 896 599 296 25 44 chr3 40811910 40812329 -118787454 - Lx7 LINE L1 -360 5937 5477 7 896 246 250 70 80 chr3 40812329 40812429 -118787354 - MT2B LTR ERVL -247 354 256 7 896 290 128 0 0 chr3 40812388 40812427 -118787356 - B1_Mur4 SINE Alu -111 39 1 7 896 914 164 205 0 chr3 40812436 40812607 -118787176 - B3 SINE B2 -10 206 1 7 896 336 200 159 34 chr3 40812846 40812934 -118786849 + RSINE1 SINE B4 5 103 -62 7 896 259 303 33 22 chr3 40813342 40813433 -118786350 + B1F SINE Alu 2 93 -56 7 896 548 232 71 6 chr3 40813476 40813645 -118786138 - L1MC1 LINE L1 -15 6318 6139 7 896 315 327 87 10 chr3 40813674 40813881 -118785902 + L1M5 LINE L1 5460 5682 -491 7 896 227 265 0 20 chr3 40815295 40815345 -118784438 + ID4_ SINE ID 35 83 0 7 896 232 282 23 103 chr3 40815353 40815440 -118784343 + ID4_ SINE ID 1 80 -3 7 896 1769 142 26 73 chr3 40815533 40815875 -118783908 - ORR1A4 LTR MaLR -1 328 3 7 896 763 180 29 31 chr3 40816794 40816979 -118782804 - B3 SINE B2 -4 191 11 7 896 1632 281 77 94 chr3 40817002 40817888 -118781895 - Lx5 LINE L1 -18 7032 6206 7 896 342 0 0 0 chr3 40817888 40817926 -118781857 + (TTAA)n Simple_repeat Simple_repeat 2 39 0 7 896 1632 201 52 30 chr3 40817926 40818268 -118781515 - Lx6 LINE L1 -1284 6176 5825 7 896 324 254 111 60 chr3 40818292 40818409 -118781374 - B4A SINE B4 -143 149 27 7 896 325 339 0 56 chr3 40818701 40818826 -118780957 - PB1 SINE Alu -3 124 7 7 896 324 287 158 45 chr3 40818957 40819249 -118780534 - L1MD LINE L1 -2982 3164 2840 7 896 435 268 116 17 chr3 40819256 40819488 -118780295 - L1MD LINE L1 -3057 3089 2835 7 896 265 199 108 47 chr3 40819508 40819656 -118780127 - L1MD LINE L1 -3788 2358 2202 7 896 647 110 120 0 chr3 40819674 40819774 -118780009 - B1_Mm SINE Alu -6 141 30 7 896 210 118 0 0 chr3 40819989 40820023 -118779760 + (TG)n Simple_repeat Simple_repeat 1 34 0 7 896 338 167 12 0 chr3 40820023 40820107 -118779676 + GA-rich Low_complexity Low_complexity 2 86 0 7 896 360 366 37 27 chr3 40820185 40820416 -118779367 - RSINE1 SINE B4 -56 236 1 7 896 463 222 196 12 chr3 40820445 40820618 -118779165 - B3 SINE B2 -9 207 3 7 896 319 271 172 18 chr3 40820707 40820992 -118778791 - L1MEf LINE L1 -4495 2138 1800 7 896 198 0 0 0 chr3 40821148 40821170 -118778613 + (TTTTTG)n Simple_repeat Simple_repeat 3 24 0 7 896 270 136 0 0 chr3 40821274 40821318 -118778465 + (T)n Simple_repeat Simple_repeat 1 44 0 7 896 343 181 170 19 chr3 40821318 40821405 -118778378 - B1_Mur1 SINE Alu 0 120 25 7 896 25 51 0 0 chr3 40821405 40821444 -118778339 + AT_rich Low_complexity Low_complexity 1 39 0 7 896 386 212 12 12 chr3 40821490 40821576 -118778207 + PB1D10 SINE Alu 30 115 -2 7 896 609 183 133 30 chr3 40821885 40822020 -118777763 - B1_Mur4 SINE Alu 0 150 2 7 896 258 306 10 48 chr3 40822154 40822257 -118777526 + MER58B DNA MER1_type 225 323 -18 7 896 229 287 135 22 chr3 40822459 40822548 -118777235 - MER5A DNA MER1_type 0 189 91 7 896 217 147 94 10 chr3 40822548 40822644 -118777139 + (TATATG)n Simple_repeat Simple_repeat 5 108 0 7 896 438 108 0 0 chr3 40822663 40822728 -118777055 + (TA)n Simple_repeat Simple_repeat 2 66 0 7 896 223 314 116 0 chr3 40822760 40822846 -118776937 - MER5A DNA MER1_type -92 97 2 7 896 192 40 0 0 chr3 40822966 40822991 -118776792 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 7 896 1140 221 63 54 chr3 40823284 40823715 -118776068 - BGLII_B LTR ERVK -269 423 1 7 896 309 125 62 0 chr3 40823932 40823996 -118775787 - L1M5 LINE L1 -489 5751 5684 7 896 1183 189 19 0 chr3 40824080 40824286 -118775497 - B3 SINE B2 -6 210 1 7 896 499 238 147 0 chr3 40824523 40824666 -118775117 + RSINE1 SINE B4 2 165 0 7 896 706 169 16 24 chr3 40825043 40825170 -118774613 + B1_Mur1 SINE Alu 19 144 -5 7 896 236 298 25 34 chr3 40825217 40825335 -118774448 - L1MC5 LINE L1 -903 7058 6942 7 896 320 305 155 41 chr3 40826749 40827091 -118772692 + L1M5 LINE L1 5384 5764 -476 7 896 313 224 92 0 chr3 40827229 40827305 -118772478 - HAL1-3A_ME LINE L1 -827 2031 1949 7 896 523 252 81 7 chr3 40827400 40827548 -118772235 - RSINE1 SINE B4 -4 161 3 7 896 358 265 203 43 chr3 40829021 40829159 -118770624 + RSINE1 SINE B4 3 162 -3 7 896 875 137 53 0 chr3 40829545 40829676 -118770107 - B1_Mus2 SINE Alu -8 139 2 7 896 763 214 77 0 chr3 40830226 40830394 -118769389 - B3A SINE B2 -17 181 1 7 896 462 136 0 0 chr3 40830599 40830680 -118769103 + (GGA)n Simple_repeat Simple_repeat 3 83 0 7 896 408 263 39 48 chr3 40830682 40830786 -118768997 - B1_Mus1 SINE Alu -30 118 16 7 896 201 183 73 73 chr3 40830935 40831059 -118768724 + (GGCTG)n Simple_repeat Simple_repeat 4 127 0 7 896 260 238 133 95 chr3 40831119 40831277 -118768506 - ORR1E LTR MaLR -160 199 36 7 896 311 242 175 0 chr3 40831302 40831422 -118768361 + L1M3 LINE L1 3423 3563 -2577 7 896 423 0 0 0 chr3 40831434 40831481 -118768302 + (TC)n Simple_repeat Simple_repeat 2 48 0 8 896 432 292 139 25 chr3 40831585 40831908 -118767875 + L1M3 LINE L1 3840 4199 -1947 7 896 418 253 15 1 chr3 40831982 40832137 -118767646 + L1M3 LINE L1 4316 4471 -1675 7 896 975 130 7 33 chr3 40832157 40832308 -118767475 + B1_Mus2 SINE Alu 1 147 0 8 896 381 322 32 45 chr3 40832337 40832493 -118767290 + RSINE1 SINE B4 12 165 0 8 896 312 288 115 12 chr3 40832509 40832762 -118767021 + L1M3 LINE L1 4466 4744 -1402 7 896 471 149 149 0 chr3 40832792 40832886 -118766897 + B3A SINE B2 19 126 -72 8 896 473 294 161 81 chr3 40832924 40833416 -118766367 + L1M3 LINE L1 4784 5314 -826 7 896 487 267 72 22 chr3 40833432 40833624 -118766159 + B3A SINE B2 1 195 0 8 896 358 293 113 75 chr3 40833797 40834063 -118765720 + MLT1B LTR MaLR 6 281 -109 8 896 422 291 31 16 chr3 40834151 40834280 -118765503 - B1F2 SINE Alu -8 141 11 8 896 649 250 230 21 chr3 40834292 40834632 -118765151 - MTD LTR MaLR 0 419 9 8 896 281 270 11 13 chr3 40834641 40834740 -118765043 + MLT1B LTR MaLR 257 370 -20 8 896 320 317 118 14 chr3 40834773 40834917 -118764866 + L1M3 LINE L1 5494 5652 -532 7 896 233 279 0 29 chr3 40834927 40834997 -118764786 + (TATATG)n Simple_repeat Simple_repeat 4 71 0 8 896 590 325 23 34 chr3 40835027 40835291 -118764492 - B4 SINE B4 -30 262 2 8 896 1286 84 22 6 chr3 40835318 40835498 -118764285 - B2_Mm1t SINE B2 -9 184 2 8 896 189 0 0 0 chr3 40835638 40835659 -118764124 + (TGG)n Simple_repeat Simple_repeat 3 23 0 8 896 716 103 36 22 chr3 40835659 40835798 -118763985 + Lx3_Mus LINE L1 6869 7009 0 8 896 216 97 0 0 chr3 40835800 40835831 -118763952 + (A)n Simple_repeat Simple_repeat 1 31 0 8 896 231 321 47 58 chr3 40835872 40835958 -118763825 - B4A SINE B4 -8 284 200 8 896 225 298 54 115 chr3 40836152 40836300 -118763483 - Charlie1a DNA MER1_type -1095 360 222 8 896 264 167 0 0 chr3 40836838 40836886 -118762897 + (TA)n Simple_repeat Simple_repeat 2 49 0 8 896 378 336 114 43 chr3 40838281 40838536 -118761247 - MLT1F LTR MaLR -250 298 26 8 896 313 231 220 70 chr3 40838570 40838756 -118761027 + B3 SINE B2 3 216 0 8 896 1221 61 0 0 chr3 40839223 40839371 -118760412 + B1_Mus1 SINE Alu 1 148 0 8 896 496 219 35 0 chr3 40839463 40839577 -118760206 + B1F SINE Alu 32 149 0 8 896 325 193 118 24 chr3 40839863 40839948 -118759835 + RSINE1 SINE B4 5 97 -68 8 896 198 118 0 0 chr3 40840017 40840051 -118759732 + (CA)n Simple_repeat Simple_repeat 1 34 0 8 896 866 276 47 51 chr3 40840928 40841203 -118758580 + B4A SINE B4 1 274 -18 8 896 321 125 0 0 chr3 40841211 40841267 -118758516 + (CA)n Simple_repeat Simple_repeat 1 56 0 8 896 242 303 13 38 chr3 40841421 40841500 -118758283 - ID4 SINE ID -4 79 3 8 896 594 167 0 22 chr3 40841569 40841704 -118758079 + CT-rich Low_complexity Low_complexity 1 132 0 8 896 547 179 50 25 chr3 40841743 40841863 -118757920 - B1_Mur3 SINE Alu 0 149 27 8 896 21 0 0 0 chr3 40842210 40842231 -118757552 + AT_rich Low_complexity Low_complexity 1 21 0 8 896 211 225 0 0 chr3 40843570 40843610 -118756173 + CT-rich Low_complexity Low_complexity 3 42 0 8 896 396 0 0 0 chr3 40843610 40843654 -118756129 + (TC)n Simple_repeat Simple_repeat 1 44 0 8 896 267 31 0 0 chr3 40843654 40843685 -118756098 + (CA)n Simple_repeat Simple_repeat 1 32 0 8 896 22 0 0 0 chr3 40844095 40844117 -118755666 + AT_rich Low_complexity Low_complexity 1 22 0 8 896 365 239 0 0 chr3 40844389 40844460 -118755323 + ID4 SINE ID 5 75 -8 8 896 545 237 36 7 chr3 40845274 40845414 -118754369 - RSINE1 SINE B4 -18 147 4 8 896 1015 86 233 6 chr3 40845616 40845792 -118753991 - B3 SINE B2 0 216 1 8 896 497 30 15 0 chr3 40846342 40846409 -118753374 + (TG)n Simple_repeat Simple_repeat 2 69 0 8 896 22 0 0 0 chr3 40847173 40847195 -118752588 + AT_rich Low_complexity Low_complexity 1 22 0 8 896 263 215 0 30 chr3 40847437 40847504 -118752279 - B1F SINE Alu 0 149 85 8 896 243 125 0 0 chr3 40847532 40847572 -118752211 + (CA)n Simple_repeat Simple_repeat 2 41 0 8 896 596 218 14 63 chr3 40848659 40848801 -118750982 - ID_B1 SINE B4 -1 223 89 8 896 883 49 16 0 chr3 40849223 40849345 -118750438 - B1_Mm SINE Alu 0 147 24 8 896 416 276 15 52 chr3 40849709 40849843 -118749940 + RSINE1 SINE B4 4 132 -33 8 896 339 130 0 0 chr3 40849845 40849899 -118749884 + (CA)n Simple_repeat Simple_repeat 1 54 0 8 896 323 214 34 45 chr3 40849992 40850080 -118749703 + B1F1 SINE Alu 6 92 -57 8 896 205 83 0 59 chr3 40851282 40851333 -118748450 + (TTTTTG)n Simple_repeat Simple_repeat 1 48 0 8 896 1442 65 11 0 chr3 40851375 40851559 -118748224 + B2_Mm1t SINE B2 2 187 -6 8 896 213 65 0 0 chr3 40851621 40851652 -118748131 + (CAGA)n Simple_repeat Simple_repeat 2 32 0 8 896 690 124 133 44 chr3 40852179 40852314 -118747469 - B1_Mus1 SINE Alu 0 148 2 8 896 378 280 105 112 chr3 40852381 40852667 -118747116 - ORR1E LTR MaLR -51 308 25 8 896 284 283 8 8 chr3 40852674 40852795 -118746988 + L1M4 LINE L1 5157 5277 -869 8 896 260 237 65 13 chr3 40852918 40852995 -118746788 + PB1D10 SINE Alu 1 81 -36 8 896 496 225 77 35 chr3 40853277 40853420 -118746363 + B1F SINE Alu 1 149 0 8 896 22 56 0 0 chr3 40854257 40854293 -118745490 + AT_rich Low_complexity Low_complexity 1 36 0 8 896 4308 124 28 38 chr3 40854561 40855324 -118744459 - RMER6A LTR ERVK -1 755 1 8 896 3381 133 12 49 chr3 40855435 40856026 -118743757 + RMER1B Other Other 494 1062 -4 8 896 253 169 159 58 chr3 40856142 40856211 -118743572 + ID4 SINE ID 5 80 -3 8 896 184 167 20 20 chr3 40856212 40856261 -118743522 + GA-rich Low_complexity Low_complexity 2 50 0 8 896 603 267 165 11 chr3 40856645 40856918 -118742865 + RMER15 LTR ERVL 259 573 -2 8 896 607 250 115 11 chr3 40856968 40857150 -118742633 + ID_B1 SINE B4 8 208 -16 8 896 670 213 158 0 chr3 40857337 40857520 -118742263 + B4 SINE B4 28 239 -53 8 896 441 239 161 37 chr3 40858030 40858191 -118741592 + ORR1D1 LTR MaLR 1 181 -193 8 896 537 0 0 40 chr3 40858191 40858267 -118741516 + (TTCTC)n Simple_repeat Simple_repeat 5 77 0 8 896 618 140 230 6 chr3 40858268 40858433 -118741350 + ORR1D1 LTR MaLR 166 367 -7 8 896 598 284 14 62 chr3 40858434 40858644 -118741139 + MTE2b LTR MaLR 10 209 -170 8 896 315 0 0 0 chr3 40858658 40858693 -118741090 + (TG)n Simple_repeat Simple_repeat 2 36 0 8 896 881 223 11 5 chr3 40858693 40858878 -118740905 - B3 SINE B2 -30 186 1 8 896 763 208 14 71 chr3 40858881 40859066 -118740717 + MTE2b LTR MaLR 204 370 0 8 896 357 24 0 0 chr3 40859963 40860005 -118739778 + (TG)n Simple_repeat Simple_repeat 1 42 0 8 896 369 274 97 0 chr3 40860047 40860171 -118739612 - RSINE1 SINE B4 -25 140 5 8 896 970 206 127 0 chr3 40860203 40860455 -118739328 + MTD LTR MaLR 1 284 -135 8 896 1324 186 99 6 chr3 40860470 40860784 -118738999 + RMER10A LTR ERVL 100 442 0 8 896 322 157 56 28 chr3 40860856 40860928 -118738855 - PB1D7 SINE Alu -37 83 10 8 896 276 210 173 0 chr3 40861134 40861215 -118738568 + PB1 SINE Alu 23 117 -10 8 896 999 166 152 0 chr3 40861228 40861329 -118738454 - Lx5 LINE L1 0 7050 6918 8 896 3073 27 85 0 chr3 40861329 40861694 -118738089 + MTA_Mm LTR MaLR 1 396 0 8 896 999 166 152 0 chr3 40861694 40861803 -118737980 - Lx5 LINE L1 -133 6917 6809 8 896 407 272 21 60 chr3 40862787 40862939 -118736844 - MLT1A1 LTR MaLR -19 448 264 8 896 228 35 0 0 chr3 40863182 40863211 -118736572 + (TGG)n Simple_repeat Simple_repeat 1 29 0 8 896 3306 51 2 2 chr3 40863416 40863812 -118735971 - MTA_Mm LTR MaLR 0 396 1 8 896 609 209 66 22 chr3 40863958 40864095 -118735688 + B1_Mur4 SINE Alu 2 144 -6 8 896 1340 124 0 5 chr3 40864105 40864299 -118735484 + B2_Mm2 SINE B2 2 194 -1 8 896 243 0 0 0 chr3 40864442 40864469 -118735314 + (TTTA)n Simple_repeat Simple_repeat 4 30 0 8 896 703 176 67 22 chr3 40864469 40864596 -118735187 - B1_Mur2 SINE Alu -13 136 3 8 896 2251 160 36 12 chr3 40865237 40865648 -118734135 - MTC LTR MaLR 0 421 1 8 896 379 276 123 108 chr3 40865760 40866101 -118733682 - MLT2C2 LTR ERVL -48 349 4 8 896 369 0 0 0 chr3 40866453 40866494 -118733289 + (TG)n Simple_repeat Simple_repeat 1 41 0 8 896 216 0 0 0 chr3 40866494 40866517 -118733266 + (GA)n Simple_repeat Simple_repeat 1 24 0 8 896 995 267 40 25 chr3 40866575 40866901 -118732882 - MTE2a LTR MaLR -6 373 43 8 896 358 296 33 66 chr3 40866913 40867065 -118732718 - B4 SINE B4 -40 252 106 8 896 304 235 165 10 chr3 40867505 40867608 -118732175 - B3A SINE B2 -74 124 6 8 896 2679 86 66 5 chr3 40868335 40868746 -118731037 - MT2B2 LTR ERVL -148 436 1 8 896 495 303 50 20 chr3 40870040 40870239 -118729544 + B3 SINE B2 9 213 -3 8 896 203 156 0 0 chr3 40870467 40870499 -118729284 + A-rich Low_complexity Low_complexity 3 34 0 8 896 278 229 43 0 chr3 40872207 40872277 -118727506 + G-rich Low_complexity Low_complexity 2 74 0 8 896 240 261 217 0 chr3 40873046 40873115 -118726668 + PB1D10 SINE Alu 1 84 -33 8 896 306 0 0 0 chr3 40873115 40873149 -118726634 + (CA)n Simple_repeat Simple_repeat 1 34 0 8 896 672 235 94 10 chr3 40874617 40874819 -118724964 + Lx8 LINE L1 7254 7472 -1 8 896 552 284 54 75 chr3 40874853 40875093 -118724690 - B4A SINE B4 -34 258 24 8 896 1214 107 57 0 chr3 40875834 40876011 -118723772 - B2_Mm2 SINE B2 -8 187 1 8 896 24 0 0 0 chr3 40876770 40876794 -118722989 + AT_rich Low_complexity Low_complexity 1 24 0 8 896 240 325 98 0 chr3 40876985 40877108 -118722675 - B1F2 SINE Alu -1 148 14 8 896 214 207 172 0 chr3 40877954 40878012 -118721771 + ID4 SINE ID 10 77 -6 8 896 281 283 64 40 chr3 40878041 40878166 -118721617 + RSINE1 SINE B4 2 129 -36 9 896 941 175 130 5 chr3 40878237 40878421 -118721362 + B3 SINE B2 2 208 -8 9 896 453 289 69 50 chr3 40878658 40878818 -118720965 + RSINE1 SINE B4 3 165 0 9 896 404 306 28 63 chr3 40878853 40878996 -118720787 + B4 SINE B4 52 189 -103 9 896 324 0 0 0 chr3 40879115 40879151 -118720632 + (A)n Simple_repeat Simple_repeat 1 36 0 9 896 724 251 87 73 chr3 40880111 40880321 -118719462 + B4A SINE B4 1 230 -62 9 896 1595 27 0 21 chr3 40880321 40880508 -118719275 + B2_Mm1t SINE B2 2 184 -9 9 896 724 251 87 73 chr3 40880508 40880585 -118719198 + B4A SINE B4 231 292 0 9 896 1167 68 0 0 chr3 40882234 40882382 -118717401 - B1_Mus1 SINE Alu 0 148 1 9 896 342 287 28 9 chr3 40882582 40882691 -118717092 - B1F SINE Alu -38 111 1 9 896 1012 92 0 13 chr3 40883202 40883356 -118716427 + L1Md_A LINE L1 6431 6582 0 9 896 271 356 94 6 chr3 40883394 40883575 -118716208 + MIRb SINE MIR 3 199 -69 9 896 251 264 14 0 chr3 40884686 40884758 -118715025 - PB1D9 SINE Alu 0 120 48 9 896 21 0 0 0 chr3 40885082 40885103 -118714680 + AT_rich Low_complexity Low_complexity 1 21 0 9 896 369 0 0 0 chr3 40885171 40885212 -118714571 + (CA)n Simple_repeat Simple_repeat 2 42 0 9 896 211 292 22 11 chr3 40886783 40886873 -118712910 + (CCG)n Simple_repeat Simple_repeat 3 93 0 9 896 230 225 69 14 chr3 40888156 40888228 -118711555 - MER58B DNA MER1_type -114 227 152 9 896 280 260 26 0 chr3 40888244 40888321 -118711462 - ID_B1 SINE B4 -1 223 145 9 896 376 328 44 15 chr3 40890481 40890617 -118709166 + MLT1I LTR MaLR 227 366 -45 9 896 22 0 0 0 chr3 40891838 40891860 -118707923 + AT_rich Low_complexity Low_complexity 1 22 0 9 896 417 233 146 0 chr3 40891921 40892024 -118707759 + ID_B1 SINE B4 104 221 -3 9 896 1061 226 125 12 chr3 40892042 40892171 -118707612 - ORR1D1 LTR MaLR 0 374 228 9 896 306 0 0 0 chr3 40892171 40892205 -118707578 + (CAGG)n Simple_repeat Simple_repeat 3 36 0 9 896 1061 226 125 12 chr3 40892205 40892411 -118707372 - ORR1D1 LTR MaLR -147 227 2 9 896 346 282 184 6 chr3 40892482 40892803 -118706980 - Charlie2b DNA MER1_type -301 2481 2104 9 896 677 169 92 0 chr3 40892817 40892947 -118706836 - B1_Mus1 SINE Alu -6 142 1 9 896 429 204 95 8 chr3 40893116 40893238 -118706545 - MTD LTR MaLR -14 405 262 9 896 336 235 242 8 chr3 40893246 40893366 -118706417 - MTD LTR MaLR -270 151 4 9 896 481 226 69 0 chr3 40893444 40893546 -118706237 - PB1D10 SINE Alu -8 109 1 9 896 435 324 155 35 chr3 40893753 40894070 -118705713 - Charlie2b DNA MER1_type -2045 737 383 9 897 637 308 11 6 chr3 40894590 40894773 -118705010 + B3A SINE B2 2 185 -13 9 897 1434 205 57 0 chr3 40894968 40895251 -118704532 - Lx6 LINE L1 -13 7447 7149 9 897 1101 88 7 0 chr3 40895316 40895463 -118704320 - B1_Mus1 SINE Alu 0 148 1 9 897 310 53 17 35 chr3 40895488 40895546 -118704237 + (CAAAA)n Simple_repeat Simple_repeat 2 58 0 9 897 837 295 35 77 chr3 40895715 40896053 -118703730 + ORR1E LTR MaLR 33 356 -3 9 897 208 154 0 37 chr3 40896677 40896731 -118703052 + CT-rich Low_complexity Low_complexity 3 54 0 9 897 550 180 31 54 chr3 40896953 40897082 -118702701 + B3A SINE B2 2 127 -71 9 897 322 303 0 63 chr3 40897639 40897734 -118702049 - RSINE1 SINE B4 0 165 77 9 897 244 258 32 0 chr3 40897814 40897876 -118701907 - RSINE1 SINE B4 -41 124 61 9 897 340 290 133 22 chr3 40897889 40898069 -118701714 + MTD LTR MaLR 8 207 -212 9 897 1384 279 65 99 chr3 40899063 40899090 -118700693 - L1MA7 LINE L1 -1 6290 6265 9 897 291 28 0 0 chr3 40899090 40899126 -118700657 + (TG)n Simple_repeat Simple_repeat 2 37 0 9 897 1384 279 65 99 chr3 40899126 40899620 -118700163 - L1MA7 LINE L1 -27 6264 5786 9 897 965 107 7 0 chr3 40899620 40899769 -118700014 + (TTTC)n Simple_repeat Simple_repeat 3 152 0 9 897 1686 47 37 5 chr3 40899773 40899989 -118699794 - L1_Mus1 LINE L1 0 6567 6345 9 897 1384 279 65 99 chr3 40899989 40900220 -118699563 - L1MA7 LINE L1 -506 5785 5558 9 897 712 272 24 0 chr3 40900697 40900866 -118698917 - ID_B1 SINE B4 -8 216 44 9 897 211 286 206 0 chr3 40900827 40900890 -118698893 - ID4_ SINE ID -2 81 6 9 897 508 268 50 25 chr3 40901248 40901447 -118698336 - RMER10B LTR ERVL 0 398 195 9 897 222 115 19 37 chr3 40901453 40901507 -118698276 + GA-rich Low_complexity Low_complexity 5 57 0 9 897 978 174 117 17 chr3 40901508 40901747 -118698036 - RMER10B LTR ERVL -134 264 2 9 897 866 223 0 72 chr3 40902517 40902725 -118697058 - B3A SINE B2 -5 193 1 9 897 374 264 113 0 chr3 40902863 40902969 -118696814 + B1F SINE Alu 6 123 -26 9 897 261 139 0 0 chr3 40902975 40903018 -118696765 + (TAGA)n Simple_repeat Simple_repeat 2 44 0 9 897 231 246 33 0 chr3 40903136 40903197 -118696586 + RSINE1 SINE B4 103 165 0 9 897 329 207 40 1 chr3 40903424 40903508 -118696275 - PB1D7 SINE Alu -62 87 2 9 897 509 253 64 40 chr3 40903782 40903984 -118695799 + ID_B1 SINE B4 1 207 -17 9 897 637 314 9 23 chr3 40904930 40905148 -118694635 + ID_B1 SINE B4 2 216 -8 9 897 2752 102 31 3 chr3 40906518 40906900 -118692883 - ORR1B1 LTR MaLR -1 393 1 9 897 803 268 28 55 chr3 40906920 40907137 -118692646 - B4A SINE B4 0 292 82 9 897 368 109 0 0 chr3 40907156 40907211 -118692572 + B1_Mur2 SINE Alu 74 128 -21 9 897 213 121 0 0 chr3 40907239 40907272 -118692511 + (TG)n Simple_repeat Simple_repeat 1 33 0 9 897 703 235 42 12 chr3 40907288 40907456 -118692327 - B3A SINE B2 -25 173 1 9 897 284 227 117 64 chr3 40907458 40907552 -118692231 - B4 SINE B4 -191 101 3 9 897 1488 70 16 0 chr3 40908302 40908488 -118691295 - B2_Mm2 SINE B2 -6 189 1 9 897 504 127 13 0 chr3 40908583 40908662 -118691121 + B1_Mus2 SINE Alu 63 142 -5 9 897 259 203 0 30 chr3 40908829 40908895 -118690888 - MIR3 SINE MIR -27 181 118 9 897 324 247 11 0 chr3 40908983 40909072 -118690711 - L1ME2 LINE L1 -5 6159 6070 9 897 1500 72 10 0 chr3 40909154 40909361 -118690422 + L1_Mus3 LINE L1 6428 6636 -2 9 897 229 82 20 20 chr3 40910007 40910057 -118689726 + (TCTG)n Simple_repeat Simple_repeat 1 50 0 9 897 198 103 0 0 chr3 40910083 40910112 -118689671 + (ATG)n Simple_repeat Simple_repeat 3 31 0 9 897 228 290 35 127 chr3 40910371 40910513 -118689270 + ORR1E LTR MaLR 1 129 -230 9 897 684 268 63 29 chr3 40910746 40910984 -118688799 - B4 SINE B4 -46 246 1 9 897 227 100 25 0 chr3 40910984 40911024 -118688759 - ID_B1 SINE B4 -2 222 182 9 897 1075 238 42 113 chr3 40911049 40911475 -118688308 + MTD LTR MaLR 8 403 -16 9 897 287 291 9 35 chr3 40912991 40913105 -118686678 + (TATATG)n Simple_repeat Simple_repeat 2 112 0 9 897 835 322 79 15 chr3 40913105 40913370 -118686413 - B4A SINE B4 -6 286 5 9 897 495 269 89 8 chr3 40913397 40913633 -118686150 - L1MC3 LINE L1 0 7995 7741 9 897 351 300 112 31 chr3 40913924 40914120 -118685663 - L1MC3 LINE L1 -269 7516 7305 9 897 820 298 29 7 chr3 40914146 40914427 -118685356 - L1MC3 LINE L1 -673 7112 6826 9 897 675 219 183 11 chr3 40914849 40914999 -118684784 + B3 SINE B2 1 182 -34 9 897 180 0 0 0 chr3 40914999 40915019 -118684764 + (CA)n Simple_repeat Simple_repeat 1 20 0 9 897 675 219 183 11 chr3 40915019 40915048 -118684735 + B3 SINE B2 183 211 -5 9 897 511 293 45 0 chr3 40915098 40915255 -118684528 - B3A SINE B2 -30 168 5 9 897 591 15 0 0 chr3 40915279 40915347 -118684436 + (CA)n Simple_repeat Simple_repeat 2 69 0 9 897 429 141 0 0 chr3 40915458 40915529 -118684254 + (TA)n Simple_repeat Simple_repeat 2 72 0 9 897 232 328 51 89 chr3 40915626 40915840 -118683943 + MIRb SINE MIR 48 253 -15 9 897 687 191 65 14 chr3 40916062 40916200 -118683583 + B1_Mus1 SINE Alu 1 145 -3 9 897 4445 62 16 2 chr3 40918889 40919467 -118680316 + L1_Mus3 LINE L1 6048 6633 -5 9 897 659 282 18 6 chr3 40920454 40920618 -118679165 - B3A SINE B2 -16 182 17 9 897 198 0 0 0 chr3 40921280 40921302 -118678481 + (T)n Simple_repeat Simple_repeat 1 22 0 9 897 672 115 0 0 chr3 40921684 40921806 -118677977 + (TC)n Simple_repeat Simple_repeat 2 123 0 9 897 228 316 0 0 chr3 40924673 40924730 -118675053 + MIR SINE MIR 38 94 -168 9 897 666 192 8 8 chr3 40924771 40924897 -118674886 + RSINE1 SINE B4 1 126 -39 9 897 234 242 132 0 chr3 40924937 40925028 -118674755 + Lx8 LINE L1 7363 7465 -8 9 897 252 196 0 0 chr3 40925107 40925158 -118674625 + MIR SINE MIR 148 198 -64 9 897 392 237 297 22 chr3 40925370 40925599 -118674184 + B4A SINE B4 1 292 0 9 897 185 254 36 0 chr3 40926232 40926287 -118673496 + L2a LINE L2 3300 3356 -70 9 897 1055 236 91 82 chr3 40926487 40926851 -118672932 - MTEa LTR MaLR -12 367 1 9 897 1541 263 131 23 chr3 40926851 40927353 -118672430 + L1MB4 LINE L1 5231 5781 -399 9 897 387 0 0 0 chr3 40927353 40927396 -118672387 + (TG)n Simple_repeat Simple_repeat 2 44 0 9 897 1541 282 68 27 chr3 40927396 40927667 -118672116 + L1MB4 LINE L1 5782 6070 -110 9 897 695 251 70 103 chr3 40927690 40928221 -118671562 + RMER17B LTR ERVK 366 958 0 9 897 804 94 72 0 chr3 40930346 40930484 -118669299 - URR1A DNA MER1_type 0 226 79 9 897 715 195 0 0 chr3 40930876 40931004 -118668779 - B1_Mur1 SINE Alu -16 133 6 9 897 429 261 0 86 chr3 40931004 40931027 -118668756 - ID_B1 SINE B4 -16 208 71 9 897 672 13 0 0 chr3 40931096 40931173 -118668610 + (GAAA)n Simple_repeat Simple_repeat 4 80 0 9 897 483 18 0 0 chr3 40931343 40931399 -118668384 + (CA)n Simple_repeat Simple_repeat 1 56 0 9 897 362 74 0 18 chr3 40931399 40931453 -118668330 + (TA)n Simple_repeat Simple_repeat 2 55 0 9 897 410 335 42 24 chr3 40933166 40933331 -118666452 + LTR16E2 LTR ERVL 148 315 -253 9 897 182 180 0 39 chr3 40935233 40935285 -118664498 + CT-rich Low_complexity Low_complexity 1 50 0 9 897 434 259 0 27 chr3 40935301 40935412 -118664371 - PB1D10 SINE Alu -8 109 2 1 897 386 275 11 53 chr3 40936180 40936368 -118663415 + (TATG)n Simple_repeat Simple_repeat 1 180 0 1 897 180 152 0 0 chr3 40936436 40936469 -118663314 + (TG)n Simple_repeat Simple_repeat 2 34 0 1 897 684 294 50 134 chr3 40936501 40936800 -118662983 - B4 SINE B4 -8 284 11 1 897 3334 58 0 0 chr3 40939153 40939549 -118660234 - MTA_Mm LTR MaLR 0 396 1 1 897 356 327 92 6 chr3 40940639 40940802 -118658981 + MER58A DNA MER1_type 40 216 -8 1 897 1154 82 0 0 chr3 40940967 40941113 -118658670 - B1_Mus2 SINE Alu 0 147 2 1 897 585 210 11 152 chr3 40941158 40941349 -118658434 - RSINE1 SINE B4 0 165 2 1 897 412 285 84 8 chr3 40941535 40941666 -118658117 - RSINE1 SINE B4 -9 156 16 1 897 1171 277 32 41 chr3 40941681 40942092 -118657691 - HAL1 LINE L1 -812 1695 1289 1 897 241 269 82 41 chr3 40942984 40943081 -118656702 + L2a LINE L2 3322 3422 -4 1 897 580 261 0 8 chr3 40943545 40943665 -118656118 - ID_B1 SINE B4 -18 206 88 1 897 435 304 22 0 chr3 40943685 40943820 -118655963 - B1_Mur1 SINE Alu -11 138 1 1 897 887 265 91 66 chr3 40943873 40944345 -118655438 - L1MB5 LINE L1 -39 6135 5652 1 897 1874 287 93 44 chr3 40944354 40945268 -118654515 - Lx6 LINE L1 -26 7434 6169 1 897 684 262 14 34 chr3 40945326 40945535 -118654248 - B3 SINE B2 -11 205 1 1 897 374 291 93 16 chr3 40945536 40945718 -118654065 - L1MB5 LINE L1 -506 5674 5479 1 897 707 191 54 15 chr3 40945735 40945924 -118653859 + B3 SINE B2 1 187 -8 1 897 554 272 29 73 chr3 40945975 40946181 -118653602 - B3A SINE B2 0 198 2 1 897 201 296 0 0 chr3 40946266 40946320 -118653463 + CT-rich Low_complexity Low_complexity 2 55 0 1 897 387 0 0 0 chr3 40946410 40946453 -118653330 + (TG)n Simple_repeat Simple_repeat 1 43 0 1 897 2117 134 33 3 chr3 40946546 40946913 -118652870 + ORR1C1 LTR MaLR 1 378 0 1 897 268 250 0 14 chr3 40946914 40946983 -118652800 - RSINE1 SINE B4 -95 70 3 1 897 523 219 0 0 chr3 40947828 40947924 -118651859 + B1_Mur1 SINE Alu 27 122 -27 1 897 247 231 190 13 chr3 40948184 40948263 -118651520 + ID_B1 SINE B4 4 96 -128 1 897 22955 171 22 96 chr3 40948264 40951481 -118648302 + L1_Mus2 LINE L1 232 3485 -2401 1 897 279 0 0 0 chr3 40951481 40951512 -118648271 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 1 897 22955 159 9 117 chr3 40951512 40953036 -118646747 + L1_Mus2 LINE L1 3486 4445 -1441 1 897 3430 73 23 0 chr3 40953036 40953477 -118646306 + L1_Mus1 LINE L1 6117 6567 0 1 897 22955 159 9 117 chr3 40953477 40953781 -118646002 + L1_Mus2 LINE L1 4446 4734 -1152 1 897 243 0 0 0 chr3 40953781 40953808 -118645975 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 897 22955 113 6 67 chr3 40953808 40955599 -118644184 + L1_Mus2 LINE L1 4735 6514 -52 1 897 549 171 8 41 chr3 40955604 40955726 -118644057 + ID_B1 SINE B4 106 223 -1 1 897 436 145 43 0 chr3 40956321 40956390 -118643393 + Lx8 LINE L1 6858 6929 -544 1 897 2036 176 5 8 chr3 40956390 40956763 -118643020 - RLTR14 LTR ERV1 -8 374 3 1 897 1565 260 51 42 chr3 40956787 40957241 -118642542 + Lx8 LINE L1 6922 7379 -94 1 897 512 204 0 0 chr3 40957276 40957374 -118642409 + B1_Mur2 SINE Alu 47 144 -5 1 897 259 277 128 0 chr3 40957460 40957554 -118642229 + MLT1J1 LTR MaLR 329 434 -10 1 897 304 302 54 23 chr3 40957744 40957873 -118641910 + MIR SINE MIR 108 240 -22 1 897 441 0 0 0 chr3 40958510 40958559 -118641224 + (CA)n Simple_repeat Simple_repeat 1 49 0 1 897 236 250 0 45 chr3 40958755 40958843 -118640940 - L1MB8 LINE L1 0 6178 6095 1 897 262 294 72 36 chr3 40960061 40960227 -118639556 - L1M5 LINE L1 -225 5899 5728 1 897 378 227 4 64 chr3 40960798 40960937 -118638846 + MLT1E2 LTR MaLR 2 125 -380 1 897 446 288 119 8 chr3 40960937 40961063 -118638720 + RSINE1 SINE B4 2 141 -24 1 897 524 302 19 29 chr3 40961898 40962106 -118637677 + ID_B1 SINE B4 2 207 -17 1 897 405 0 0 0 chr3 40962307 40962352 -118637431 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 897 3267 29 0 0 chr3 40963304 40963682 -118636101 + L1Md_T LINE L1 6205 6582 0 1 897 700 218 0 0 chr3 40963873 40964006 -118635777 - B1_Mur1 SINE Alu -16 133 1 1 897 302 271 0 0 chr3 40964478 40964548 -118635235 - L1MC4a LINE L1 -27 7855 7786 1 897 879 206 43 11 chr3 40964705 40964891 -118634892 - B3A SINE B2 -6 192 1 1 897 1470 152 162 42 chr3 40965072 40965380 -118634403 + Lx5 LINE L1 6706 7050 0 1 897 355 198 16 124 chr3 40965394 40965515 -118634268 + MT2B LTR ERVL 157 264 -337 1 897 699 136 79 16 chr3 40965413 40965540 -118634243 + B1_Mur2 SINE Alu 14 148 -1 1 897 338 296 36 18 chr3 40965907 40965927 -118633856 - PB1D10 SINE Alu -5 112 36 1 897 374 222 12 24 chr3 40965927 40966010 -118633773 - ID_B1 SINE B4 -54 170 89 1 897 1992 253 18 92 chr3 40966469 40966580 -118633203 - RLTR18 LTR ERVK -3 613 510 1 897 2267 151 8 3 chr3 40966580 40966945 -118632838 + ORR1B2 LTR MaLR 1 367 0 1 897 1992 253 18 92 chr3 40966945 40966982 -118632801 - RLTR18 LTR ERVK -107 509 488 1 897 777 234 14 0 chr3 40966982 40967127 -118632656 - B1_Mur2 SINE Alu -1 148 2 1 897 1992 253 18 92 chr3 40967127 40967639 -118632144 - RLTR18 LTR ERVK -129 487 1 1 897 515 301 100 43 chr3 40967750 40968101 -118631682 + MLT1D LTR MaLR 2 372 -133 1 897 357 313 163 33 chr3 40969534 40969841 -118629942 - MLT1A LTR MaLR -8 366 20 1 897 276 105 412 20 chr3 40970286 40970383 -118629400 - B2_Mm2 SINE B2 -14 181 47 1 897 965 146 92 0 chr3 40970411 40970575 -118629208 - B2_Mm1t SINE B2 -14 179 1 1 897 388 332 69 32 chr3 40971101 40971319 -118628464 + ORR1E LTR MaLR 14 239 -120 1 897 523 266 151 40 chr3 40971441 40971792 -118627991 - MLT1C LTR MaLR -10 495 114 1 897 1156 171 28 5 chr3 40972178 40972389 -118627394 + B3 SINE B2 1 216 0 1 897 793 231 117 19 chr3 40973209 40973465 -118626318 - B4 SINE B4 -4 288 8 1 897 1335 214 152 8 chr3 40974082 40974096 -118625687 + MTD LTR MaLR 1 14 -405 1 897 425 19 0 18 chr3 40974096 40974151 -118625632 + (TTTTA)n Simple_repeat Simple_repeat 2 55 0 1 897 1335 214 152 8 chr3 40974151 40974321 -118625462 + MTD LTR MaLR 15 228 -191 1 897 333 0 0 0 chr3 40974321 40974358 -118625425 + (TG)n Simple_repeat Simple_repeat 1 37 0 1 897 384 22 0 0 chr3 40974358 40974402 -118625381 + (GA)n Simple_repeat Simple_repeat 1 45 0 1 897 1335 214 152 8 chr3 40974402 40974569 -118625214 + MTD LTR MaLR 229 403 -16 1 897 518 132 0 0 chr3 40974625 40974708 -118625075 - B1_Mur1 SINE Alu -20 129 47 1 897 344 211 0 112 chr3 40975285 40975365 -118624418 - B4 SINE B4 0 292 222 1 897 265 330 21 0 chr3 40975396 40975490 -118624293 - B4 SINE B4 -2 290 195 1 897 775 229 73 0 chr3 40975523 40975715 -118624068 + B3 SINE B2 1 206 -10 1 897 407 283 23 62 chr3 40975745 40975922 -118623861 - B4 SINE B4 -120 172 3 1 897 832 231 75 24 chr3 40975922 40976133 -118623650 - B4 SINE B4 -69 223 2 1 897 190 0 32 32 chr3 40976145 40976176 -118623607 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1 897 1847 196 68 13 chr3 40977476 40977873 -118621910 - MTD LTR MaLR 0 419 1 1 897 724 223 7 0 chr3 40977958 40978097 -118621686 + B1_Mur1 SINE Alu 3 142 -7 1 897 1719 47 23 0 chr3 40978117 40978332 -118621451 - L1_Mus3 LINE L1 -777 5861 5642 1 897 6047 63 9 1 chr3 40978332 40979107 -118620676 + L1_Mus3 LINE L1 5852 6632 -6 1 897 1956 134 3 0 chr3 40979198 40979512 -118620271 + ORR1A0 LTR MaLR 1 315 -31 1 897 1077 242 96 32 chr3 40979679 40980024 -118619759 - MTEa LTR MaLR 0 379 13 1 897 231 227 14 43 chr3 40980273 40980342 -118619441 + ORR1A0 LTR MaLR 313 379 0 1 897 217 255 0 0 chr3 40980498 40980545 -118619238 + (TCTA)n Simple_repeat Simple_repeat 1 47 0 1 897 350 264 18 61 chr3 40981049 40981214 -118618569 + GA-rich Low_complexity Low_complexity 4 161 0 1 897 612 269 25 30 chr3 40981505 40981704 -118618079 + B3A SINE B2 1 198 0 1 897 236 288 193 7 chr3 40982108 40982248 -118617535 - MIRb SINE MIR -3 259 94 1 897 1337 208 95 0 chr3 40982912 40983258 -118616525 - MTD LTR MaLR 0 419 41 1 897 333 0 0 0 chr3 40983309 40983346 -118616437 + (CA)n Simple_repeat Simple_repeat 1 37 0 1 897 438 311 22 82 chr3 40983523 40983705 -118616078 - B4 SINE B4 -119 173 3 1 897 812 278 91 67 chr3 40984060 40984319 -118615464 + Lx8 LINE L1 7072 7331 -142 1 897 826 139 58 0 chr3 40984319 40984456 -118615327 - B1_Mur4 SINE Alu -1 149 5 1 897 812 278 91 67 chr3 40984456 40984582 -118615201 + Lx8 LINE L1 7332 7466 -7 1 897 28 61 0 0 chr3 40985796 40985845 -118613938 + AT_rich Low_complexity Low_complexity 1 49 0 1 897 190 343 112 19 chr3 40986570 40986677 -118613106 + L2b LINE L2 3240 3356 -19 1 897 181 308 64 0 chr3 40987406 40987484 -118612299 + MIRc SINE MIR 96 178 -90 1 897 209 346 0 25 chr3 40989234 40989314 -118610469 - L2c LINE L2 -159 3228 3151 1 897 1294 276 16 19 chr3 40989605 40989978 -118609805 + MTEa LTR MaLR 8 379 0 1 897 35510 70 7 7 chr3 40990281 40996015 -118603768 - L1Md_F2 LINE L1 0 6582 916 1 897 189 0 0 0 chr3 40996015 40996036 -118603747 + (TA)n Simple_repeat Simple_repeat 1 21 0 1 897 4935 119 43 32 chr3 40996036 40996526 -118603257 - L1Md_F2 LINE L1 -5701 915 392 1 897 260 320 135 24 chr3 40996903 40997111 -118602672 + MIR SINE MIR 11 241 -21 1 897 555 268 22 0 chr3 40997229 40997367 -118602416 + B1F SINE Alu 1 141 -8 1 897 692 191 57 0 chr3 40997377 40997518 -118602265 + B1_Mur4 SINE Alu 1 149 -1 1 897 364 248 17 58 chr3 40997609 40997729 -118602054 - B3A SINE B2 -1 197 83 1 897 549 0 0 0 chr3 40997797 40997858 -118601925 + (TA)n Simple_repeat Simple_repeat 2 62 0 1 897 33 73 0 0 chr3 41001009 41001077 -118598706 + AT_rich Low_complexity Low_complexity 1 68 0 1 897 645 212 76 18 chr3 41001091 41001260 -118598523 - B3A SINE B2 -9 189 7 2 897 216 255 0 0 chr3 41002214 41002261 -118597522 + (CGTG)n Simple_repeat Simple_repeat 1 47 0 3 897 189 147 0 0 chr3 41003095 41003129 -118596654 + (T)n Simple_repeat Simple_repeat 1 34 0 4 897 201 74 0 0 chr3 41004700 41004727 -118595056 + (TG)n Simple_repeat Simple_repeat 2 28 0 5 897 1199 295 76 19 chr3 41004763 41005237 -118594546 - RMER5 LTR ERV1 0 534 34 6 897 351 181 169 0 chr3 41005369 41005452 -118594331 + MTD LTR MaLR 1 97 -322 7 897 961 228 46 94 chr3 41005516 41005859 -118593924 + MTD LTR MaLR 47 405 -14 8 897 359 145 205 0 chr3 41006010 41006093 -118593690 - B1_Mus1 SINE Alu -48 100 1 9 897 1239 143 71 5 chr3 41006218 41006429 -118593354 + URR1B DNA MER1_type 1 225 0 1 897 32 26 0 0 chr3 41007337 41007376 -118592407 + AT_rich Low_complexity Low_complexity 1 39 0 1 897 306 295 231 15 chr3 41007384 41007518 -118592265 - RSINE1 SINE B4 0 165 3 1 897 590 151 329 38 chr3 41007550 41007708 -118592075 - B3 SINE B2 -10 206 3 1 897 337 313 104 58 chr3 41007797 41008075 -118591708 - B4A SINE B4 0 292 2 1 897 264 226 0 0 chr3 41008434 41008496 -118591287 + GA-rich Low_complexity Low_complexity 3 64 0 1 897 252 143 0 0 chr3 41008517 41008559 -118591224 + (TC)n Simple_repeat Simple_repeat 1 42 0 1 897 252 143 0 0 chr3 41008577 41008619 -118591164 + (GGGGA)n Simple_repeat Simple_repeat 5 46 0 1 897 735 12 0 0 chr3 41008619 41008703 -118591080 + (GA)n Simple_repeat Simple_repeat 1 84 0 1 897 432 265 26 0 chr3 41008711 41008828 -118590955 - B1_Mur1 SINE Alu -28 121 2 1 897 594 128 0 0 chr3 41010639 41010733 -118589050 + (TA)n Simple_repeat Simple_repeat 2 95 0 2 897 1173 54 0 20 chr3 41010866 41011016 -118588767 - B1_Mus1 SINE Alu 0 148 2 2 897 1083 65 0 42 chr3 41011173 41011317 -118588466 + B1_Mus1 SINE Alu 1 138 -10 2 897 312 27 0 0 chr3 41011325 41011362 -118588421 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 2 897 909 150 0 0 chr3 41011590 41011723 -118588060 - B1_Mus1 SINE Alu -15 133 1 2 897 445 260 10 10 chr3 41011808 41011909 -118587874 - B4A SINE B4 -165 127 27 2 897 3545 180 125 83 chr3 41011979 41012850 -118586933 + RMER13B LTR ERVK 1 908 0 2 897 467 354 77 60 chr3 41013233 41013569 -118586214 - ORR1E LTR MaLR -10 349 8 2 897 207 177 30 30 chr3 41013842 41013941 -118585842 + (TATG)n Simple_repeat Simple_repeat 4 102 0 2 897 186 218 45 9 chr3 41013962 41014073 -118585710 + (TG)n Simple_repeat Simple_repeat 2 116 0 2 897 181 182 0 35 chr3 41014136 41014193 -118585590 + (TG)n Simple_repeat Simple_repeat 1 55 0 2 897 378 315 75 44 chr3 41014809 41015035 -118584748 + MIRb SINE MIR 36 268 0 3 897 791 239 9 58 chr3 41015065 41015291 -118584492 - B4 SINE B4 -35 257 43 3 897 381 58 0 0 chr3 41015354 41015406 -118584377 + (TG)n Simple_repeat Simple_repeat 1 52 0 3 897 624 174 91 0 chr3 41015417 41015549 -118584234 - B3A SINE B2 -54 144 1 3 897 387 271 32 24 chr3 41016229 41016354 -118583429 + MER90 LTR ERV1 441 566 -9 3 897 1133 70 0 14 chr3 41017213 41017358 -118582425 + B1_Mus2 SINE Alu 5 147 0 3 897 189 0 0 0 chr3 41017358 41017379 -118582404 + (A)n Simple_repeat Simple_repeat 1 21 0 3 897 284 333 0 11 chr3 41017395 41017489 -118582294 + MTEb LTR MaLR 258 350 -29 3 897 402 234 90 0 chr3 41017816 41017927 -118581856 + RSINE1 SINE B4 45 165 0 3 897 492 291 121 23 chr3 41018485 41018700 -118581083 + LTR41 LTR ERVL 11 246 -522 3 897 1882 94 45 67 chr3 41019272 41019567 -118580216 + Lx LINE L1 6331 6630 -24 4 897 1641 47 0 0 chr3 41019567 41019759 -118580024 + B2_Mm1a SINE B2 1 192 -1 4 897 1882 94 45 67 chr3 41019759 41019794 -118579989 + Lx LINE L1 6631 6654 0 4 897 204 97 0 0 chr3 41019949 41019980 -118579803 + (CA)n Simple_repeat Simple_repeat 1 31 0 4 897 867 237 15 25 chr3 41019996 41020199 -118579584 - B3 SINE B2 -3 213 13 4 897 465 175 141 21 chr3 41020228 41020390 -118579393 + ORR1D1 LTR MaLR 1 179 -205 4 897 411 321 94 37 chr3 41020558 41020930 -118578853 - L2a LINE L2 -246 3180 2789 4 897 483 18 0 0 chr3 41021281 41021337 -118578446 + (TCTA)n Simple_repeat Simple_repeat 3 58 0 4 897 409 307 111 57 chr3 41021393 41021673 -118578110 + L1MC4 LINE L1 6653 6947 -1095 4 897 1177 201 5 0 chr3 41021801 41022005 -118577778 - B3 SINE B2 -7 209 5 4 897 377 330 188 27 chr3 41022019 41022611 -118577172 + L1MC4 LINE L1 7109 7795 -247 4 897 436 285 69 52 chr3 41022740 41022914 -118576869 - L2a LINE L2 -710 2709 2533 4 897 213 338 94 7 chr3 41023445 41023594 -118576189 - MIRb SINE MIR -28 240 79 4 897 306 239 0 14 chr3 41024205 41024277 -118575506 - B4A SINE B4 -220 72 2 5 897 709 237 106 13 chr3 41024971 41025198 -118574585 + B4 SINE B4 2 249 -43 5 897 582 15 0 0 chr3 41025255 41025322 -118574461 + (CA)n Simple_repeat Simple_repeat 1 67 0 5 897 331 219 191 0 chr3 41025400 41025505 -118574278 - MLT1F2 LTR MaLR 0 680 556 5 112 614 262 147 73 chr3 41025512 41025866 -118573917 - MLT1F2 LTR MaLR -175 385 6 5 898 212 311 124 19 chr3 41026028 41026133 -118573650 - PB1D10 SINE Alu -1 116 1 5 898 1487 162 157 29 chr3 41026206 41026556 -118573227 - RMER19A LTR ERVK 0 737 343 5 898 4486 140 29 37 chr3 41026562 41027327 -118572456 - Lx2B LINE L1 -4 6996 6238 5 898 2180 108 93 0 chr3 41027327 41027670 -118572113 + Lx2B LINE L1 5869 6243 -757 5 898 1396 164 188 0 chr3 41027671 41027975 -118571808 - RMER19A LTR ERVK -376 361 1 5 898 688 147 0 0 chr3 41028071 41028187 -118571596 - B1_Mus2 SINE Alu -16 131 16 5 898 2438 147 50 5 chr3 41028191 41028594 -118571189 + MTC LTR MaLR 1 421 0 5 898 27 0 0 0 chr3 41028693 41028720 -118571063 + AT_rich Low_complexity Low_complexity 1 27 0 5 898 2405 156 62 5 chr3 41028747 41029185 -118570598 - Lx3A LINE L1 -5 6976 6514 6 898 630 143 0 0 chr3 41029713 41029832 -118569951 + (GGA)n Simple_repeat Simple_repeat 3 121 0 6 898 523 244 116 0 chr3 41029879 41030043 -118569740 + MER2 DNA MER2_type 157 339 -6 6 898 417 39 0 0 chr3 41030043 41030094 -118569689 + (TG)n Simple_repeat Simple_repeat 2 52 0 6 898 455 338 39 43 chr3 41030283 41030564 -118569219 - B4A SINE B4 -12 280 1 6 898 290 317 0 0 chr3 41031681 41031785 -118567998 + (TG)n Simple_repeat Simple_repeat 1 104 0 6 898 379 251 0 33 chr3 41031785 41031955 -118567828 + (TA)n Simple_repeat Simple_repeat 2 166 0 6 898 213 39 0 0 chr3 41031955 41031981 -118567802 + (GA)n Simple_repeat Simple_repeat 1 26 0 6 898 379 251 0 33 chr3 41031981 41031991 -118567792 + (TA)n Simple_repeat Simple_repeat 2 11 0 6 898 261 169 0 0 chr3 41032090 41032149 -118567634 + (TG)n Simple_repeat Simple_repeat 2 60 0 6 898 1447 47 0 19 chr3 41033932 41034252 -118565531 + (TCTA)n Simple_repeat Simple_repeat 1 313 0 7 898 776 261 5 11 chr3 41034260 41034446 -118565337 - B3 SINE B2 -30 186 2 7 898 1166 68 0 0 chr3 41034476 41034623 -118565160 - B1_Mus1 SINE Alu 0 148 2 7 898 384 349 108 6 chr3 41035500 41035667 -118564116 + Tigger7 DNA MER2_type 6 189 -2302 7 898 296 272 84 42 chr3 41036208 41036327 -118563456 - MLT1I LTR MaLR -253 158 35 7 898 498 308 21 0 chr3 41036837 41036980 -118562803 - B4A SINE B4 -6 286 141 7 898 394 226 0 0 chr3 41036995 41037079 -118562704 - B4A SINE B4 -208 84 1 7 898 642 312 70 22 chr3 41040029 41040301 -118559482 - B4A SINE B4 -6 286 2 7 898 555 206 0 0 chr3 41040924 41041084 -118558699 + (TG)n Simple_repeat Simple_repeat 1 160 0 7 898 297 277 15 0 chr3 41041107 41041172 -118558611 + tRNA-Ala-GCY_ tRNA tRNA 1 66 -9 7 898 295 333 12 0 chr3 41041172 41041183 -118558600 + ID4_ SINE ID 7 83 0 7 898 370 214 12 0 chr3 41041376 41041460 -118558323 + B3A SINE B2 64 148 -50 8 898 1281 61 0 0 chr3 41041460 41041640 -118558143 + (CA)n Simple_repeat Simple_repeat 1 180 0 8 898 364 263 35 17 chr3 41041640 41041672 -118558111 + B3 SINE B2 147 180 -36 8 898 225 312 86 27 chr3 41043150 41043371 -118556412 - MIRb SINE MIR -34 234 1 8 898 226 312 147 29 chr3 41044231 41044469 -118555314 - RMER12 LTR ERVK -287 1035 770 8 898 429 240 13 7 chr3 41045032 41045187 -118554596 + (TA)n Simple_repeat Simple_repeat 2 157 0 8 898 22 0 0 0 chr3 41045284 41045306 -118554477 + AT_rich Low_complexity Low_complexity 1 22 0 8 898 1782 195 78 3 chr3 41046889 41047279 -118552504 + MTD LTR MaLR 1 405 -14 8 898 219 246 27 14 chr3 41047770 41047844 -118551939 + L3 LINE CR1 3428 3502 -987 8 898 338 79 53 0 chr3 41047924 41048000 -118551783 + (TTTTTG)n Simple_repeat Simple_repeat 4 83 0 8 898 1176 68 0 0 chr3 41048009 41048156 -118551627 - B1_Mus1 SINE Alu -1 147 1 8 898 209 143 36 0 chr3 41048199 41048255 -118551528 + (TCTCTG)n Simple_repeat Simple_repeat 2 59 0 9 898 256 279 0 9 chr3 41048259 41048364 -118551419 + CT-rich Low_complexity Low_complexity 2 105 0 9 898 1888 195 27 17 chr3 41048535 41048948 -118550835 + MTD LTR MaLR 3 419 0 9 898 455 0 18 0 chr3 41049270 41049325 -118550458 + (CA)n Simple_repeat Simple_repeat 2 57 0 9 898 369 58 0 0 chr3 41049325 41049377 -118550406 + (GA)n Simple_repeat Simple_repeat 1 52 0 9 898 1970 278 76 13 chr3 41049573 41049703 -118550080 - Lx8 LINE L1 -2 7471 7335 9 898 594 0 0 0 chr3 41049703 41049769 -118550014 + (TTCC)n Simple_repeat Simple_repeat 2 67 0 9 898 1970 278 76 13 chr3 41049769 41050253 -118549530 - Lx8 LINE L1 -139 7334 6818 9 898 848 246 103 49 chr3 41050337 41050666 -118549117 - RMER13A LTR ERVK -416 444 98 9 898 242 87 0 21 chr3 41050701 41050748 -118549035 + (TTTTTG)n Simple_repeat Simple_repeat 2 47 0 9 898 621 153 26 30 chr3 41051017 41051323 -118548460 + (TG)n Simple_repeat Simple_repeat 1 304 0 9 898 404 348 12 71 chr3 41051334 41051504 -118548279 - RSINE1 SINE B4 0 165 6 1 898 185 268 89 0 chr3 41051555 41051611 -118548172 + L2a LINE L2 2278 2338 -1081 1 898 250 314 115 8 chr3 41051713 41051835 -118547948 + MIR SINE MIR 90 224 -38 1 898 594 316 196 49 chr3 41051872 41052782 -118547001 + L2a LINE L2 2354 3397 -29 1 898 1054 237 24 24 chr3 41052831 41053086 -118546697 - Lx8 LINE L1 -282 7191 6937 1 898 268 257 59 10 chr3 41053116 41053218 -118546565 - MIRc SINE MIR -68 200 94 1 898 1433 278 122 21 chr3 41053374 41053889 -118545894 - Lx8 LINE L1 -523 6950 6384 1 898 12876 92 4 32 chr3 41054107 41055226 -118544557 + L1Md_A LINE L1 620 1716 -4167 1 898 7714 16 0 0 chr3 41055226 41056085 -118543698 + L1Md_A LINE L1 5723 6581 -1 1 898 12876 62 0 26 chr3 41056085 41057333 -118542450 + L1Md_A LINE L1 1717 2919 -2964 1 898 8159 39 7 2 chr3 41060003 41061020 -118538763 + L1Md_F3 LINE L1 5587 6584 0 1 898 911 158 0 0 chr3 41061500 41061646 -118538137 + B1_Mus1 SINE Alu 2 147 -1 1 898 230 98 38 38 chr3 41061647 41061700 -118538083 + A-rich Low_complexity Low_complexity 3 55 0 1 898 555 254 67 17 chr3 41061925 41062105 -118537678 + MIRb SINE MIR 65 253 -15 1 898 594 279 0 0 chr3 41063501 41063641 -118536142 - RSINE1 SINE B4 -25 140 1 1 898 815 261 0 86 chr3 41064615 41064858 -118534925 + ID_B1 SINE B4 3 224 0 1 898 233 29 0 29 chr3 41065036 41065071 -118534712 + (TTTTTG)n Simple_repeat Simple_repeat 3 36 0 1 898 513 251 14 5 chr3 41065071 41065184 -118534599 + B3A SINE B2 35 143 -55 1 898 258 125 0 0 chr3 41065184 41065232 -118534551 + (CA)n Simple_repeat Simple_repeat 1 48 0 1 898 225 261 123 104 chr3 41065232 41065273 -118534510 + B2_Mm2 SINE B2 137 195 0 1 898 216 139 23 0 chr3 41067111 41067154 -118532629 + B4 SINE B4 1 44 -248 1 898 213 160 39 20 chr3 41067995 41068046 -118531737 + MIRc SINE MIR 133 184 -84 1 898 312 237 6 28 chr3 41068445 41068623 -118531160 + CT-rich Low_complexity Low_complexity 3 176 0 1 898 301 248 39 67 chr3 41069052 41069156 -118530627 - LTR90B LTR LTR 0 796 696 1 898 609 203 88 22 chr3 41069517 41069653 -118530130 - B1_Mus2 SINE Alu -1 146 2 1 898 216 214 89 0 chr3 41069983 41070039 -118529744 + BC1_Mm scRNA scRNA 22 82 -70 1 898 281 144 174 46 chr3 41070192 41070301 -118529482 - Lx9 LINE L1 0 7644 7522 1 898 411 362 86 42 chr3 41070330 41070783 -118529000 - MER21B LTR ERV1 -112 751 279 1 898 333 236 79 0 chr3 41070781 41070870 -118528913 - RSINE1 SINE B4 -68 97 2 1 898 246 268 35 3 chr3 41070941 41071020 -118528763 + MIRc SINE MIR 44 124 -138 1 898 564 333 158 26 chr3 41071096 41071538 -118528245 - L1MC4a LINE L1 -335 7547 7038 1 898 279 0 0 0 chr3 41071538 41071569 -118528214 + (TTCA)n Simple_repeat Simple_repeat 3 33 0 1 898 564 333 158 26 chr3 41071569 41072093 -118527690 - L1MC4a LINE L1 -845 7037 6454 1 898 416 265 82 16 chr3 41072170 41072354 -118527429 - L1MA6 LINE L1 -77 6223 6028 1 898 299 292 143 49 chr3 41072345 41072673 -118527110 - L1MC4a LINE L1 -1394 6488 6130 1 898 327 274 185 0 chr3 41072683 41072829 -118526954 - MTEa LTR MaLR -5 374 202 1 898 538 182 23 23 chr3 41072830 41073101 -118526682 + GA-rich Low_complexity Low_complexity 1 271 0 1 898 272 247 26 52 chr3 41073101 41073178 -118526605 - MTEa LTR MaLR -170 209 135 1 898 33 0 0 23 chr3 41073571 41073594 -118526189 + AT_rich Low_complexity Low_complexity 1 23 0 1 898 3572 125 39 34 chr3 41073594 41074189 -118525594 + Lx3A LINE L1 6378 6975 -6 1 898 33 0 0 23 chr3 41074189 41074209 -118525574 + AT_rich Low_complexity Low_complexity 1 20 0 1 898 412 378 14 14 chr3 41074383 41074595 -118525188 - MLT1H1 LTR MaLR -7 548 337 1 898 384 135 112 0 chr3 41074890 41074979 -118524804 + MTEa LTR MaLR 30 128 -251 1 898 558 275 7 0 chr3 41075390 41075528 -118524255 + ID_B1 SINE B4 3 141 -83 1 898 714 328 98 55 chr3 41075818 41076144 -118523639 + Tigger5 DNA MER2_type 24 363 -3 1 898 2598 73 73 0 chr3 41076704 41077114 -118522669 - RLTR47_MM LTR ERV1 -92 440 1 1 898 441 310 39 39 chr3 41077194 41077449 -118522334 - MuLV-int LTR ERV1 -80 7526 7272 1 898 1830 311 62 67 chr3 41078005 41079500 -118520283 - MuRRS4-int LTR ERV1 -2009 5547 2854 1 898 4760 125 52 86 chr3 41079500 41080438 -118519345 + RMER17A2 LTR ERVK 1 906 0 1 898 1830 303 70 80 chr3 41080438 41080533 -118519250 - MuRRS4-int LTR ERV1 -2210 2853 2757 1 898 1713 316 94 41 chr3 41080601 41081816 -118517967 - MuRRS4-int LTR ERV1 -5216 2562 1284 1 898 317 259 138 30 chr3 41082305 41082472 -118517311 - MuRRS4-int LTR ERV1 -6858 698 514 1 898 718 122 150 0 chr3 41082896 41083043 -118516740 - RLTR47_MM LTR ERV1 -7 525 357 1 898 276 78 46 15 chr3 41083050 41083115 -118516668 + (TTTTTG)n Simple_repeat Simple_repeat 3 69 0 1 898 855 249 126 17 chr3 41083161 41083509 -118516274 + MLT1B LTR MaLR 5 390 0 1 898 2153 68 0 0 chr3 41083833 41084097 -118515686 - L1Md_F2 LINE L1 -444 6138 5875 1 898 3377 48 0 9 chr3 41084097 41084519 -118515264 + L1Md_F2 LINE L1 6164 6581 -1 1 898 819 285 59 22 chr3 41084699 41085054 -118514729 + L1MA7 LINE L1 5565 5932 -359 1 898 23 0 0 0 chr3 41086878 41086901 -118512882 + AT_rich Low_complexity Low_complexity 1 23 0 1 898 314 285 56 56 chr3 41087208 41087368 -118512415 - MIRb SINE MIR -10 258 99 1 898 552 287 13 114 chr3 41087568 41087796 -118511987 - B4 SINE B4 -3 289 85 1 898 1221 266 16 42 chr3 41087924 41088313 -118511470 - MTE2a LTR MaLR -22 397 18 1 898 793 239 19 14 chr3 41088403 41088615 -118511168 - B3 SINE B2 -2 214 2 1 898 554 292 30 48 chr3 41089594 41089889 -118509894 - B4A SINE B4 -2 290 1 1 898 285 282 74 40 chr3 41089928 41090076 -118509707 - LTR81B LTR ERV1? -14 1379 1227 1 898 282 263 234 39 chr3 41090076 41090185 -118509598 - MamGypLTR2 LTR Gypsy -14 1175 869 1 898 24 53 0 0 chr3 41090675 41090713 -118509070 + AT_rich Low_complexity Low_complexity 1 38 0 1 898 428 239 17 50 chr3 41090868 41090987 -118508796 - PB1D10 SINE Alu -1 116 2 1 898 242 258 62 112 chr3 41091886 41091923 -118507860 - B2_Mm2 SINE B2 -8 187 153 1 898 378 0 0 0 chr3 41091923 41091965 -118507818 + (TG)n Simple_repeat Simple_repeat 2 43 0 1 898 558 234 44 9 chr3 41091965 41092106 -118507677 - B3A SINE B2 -38 160 18 1 898 240 269 140 0 chr3 41092233 41092326 -118507457 + L2a LINE L2 3305 3410 -16 1 898 445 238 0 0 chr3 41092958 41093042 -118506741 + B3A SINE B2 36 119 -79 1 898 22 35 0 0 chr3 41093145 41093174 -118506609 + AT_rich Low_complexity Low_complexity 1 29 0 1 898 253 250 55 94 chr3 41093185 41093313 -118506470 + PB1 SINE Alu 4 126 -1 1 898 963 130 0 43 chr3 41093678 41093839 -118505944 + B2_Mm2 SINE B2 1 154 -41 1 898 198 0 0 0 chr3 41093840 41093862 -118505921 + (TAAA)n Simple_repeat Simple_repeat 4 25 0 1 898 222 339 0 0 chr3 41094058 41094120 -118505663 - ID4_ SINE ID -13 70 9 1 898 21 0 0 0 chr3 41094130 41094151 -118505632 + AT_rich Low_complexity Low_complexity 1 21 0 1 898 361 237 90 66 chr3 41094153 41094275 -118505508 - PB1 SINE Alu -2 125 1 1 898 239 321 9 62 chr3 41094883 41094976 -118504807 - Tigger5 DNA MER2_type -10 2396 2308 1 898 216 0 0 0 chr3 41094976 41095000 -118504783 + (CA)n Simple_repeat Simple_repeat 2 25 0 1 898 239 321 9 62 chr3 41095000 41095019 -118504764 - Tigger5 DNA MER2_type -99 2307 2290 1 898 396 317 91 51 chr3 41095158 41095434 -118504349 + B4A SINE B4 2 288 -4 1 898 1151 264 90 0 chr3 41095825 41096159 -118503624 - MTD LTR MaLR 0 419 56 1 898 1077 183 16 60 chr3 41097281 41097407 -118502376 - RMER1C Other Other 0 1342 1215 1 898 1042 119 0 22 chr3 41097407 41097588 -118502195 + (GAGAA)n Simple_repeat Simple_repeat 4 180 0 1 898 1077 183 16 60 chr3 41097588 41097620 -118502163 - RMER1C Other Other -128 1214 1191 1 898 1412 28 0 11 chr3 41097620 41097798 -118501985 + (GAGAA)n Simple_repeat Simple_repeat 3 178 0 1 898 1074 144 0 0 chr3 41097798 41097977 -118501806 + (GGGAA)n Simple_repeat Simple_repeat 1 180 0 1 898 1077 183 16 60 chr3 41097977 41098066 -118501717 - RMER1C Other Other -152 1190 1105 1 898 423 0 0 0 chr3 41098088 41098135 -118501648 + (TC)n Simple_repeat Simple_repeat 1 47 0 1 898 579 167 0 44 chr3 41098135 41098248 -118501535 + B1_Mur1 SINE Alu 33 140 -9 1 898 708 74 0 0 chr3 41098324 41098419 -118501364 + (TTTC)n Simple_repeat Simple_repeat 2 96 0 1 898 555 291 0 0 chr3 41098551 41098685 -118501098 - RSINE1 SINE B4 -2 163 30 1 898 182 37 37 0 chr3 41098939 41098966 -118500817 + (TC)n Simple_repeat Simple_repeat 1 28 0 1 898 288 372 10 0 chr3 41100789 41100891 -118498892 - B1F2 SINE Alu -44 105 3 1 898 459 263 119 0 chr3 41100992 41101110 -118498673 + ID_B1 SINE B4 89 220 -4 1 898 438 69 0 0 chr3 41101134 41101192 -118498591 + (TAAA)n Simple_repeat Simple_repeat 3 60 0 1 898 269 275 62 0 chr3 41101493 41101573 -118498210 - Charlie7 DNA MER1_type -359 2253 2169 1 898 464 294 156 19 chr3 41101652 41101909 -118497874 - B4A SINE B4 0 292 1 1 898 404 301 47 37 chr3 41101940 41102130 -118497653 + B4A SINE B4 2 193 -99 1 898 1415 221 98 0 chr3 41102198 41102564 -118497219 + MTD LTR MaLR 18 419 0 1 898 710 283 67 38 chr3 41102654 41103073 -118496710 - Charlie7 DNA MER1_type -531 2081 1651 1 898 311 250 0 0 chr3 41103085 41103185 -118496598 + T-rich Low_complexity Low_complexity 1 100 0 1 898 371 266 9 18 chr3 41103619 41103730 -118496053 - B4A SINE B4 -18 274 165 1 898 330 236 284 7 chr3 41103733 41103874 -118495909 + B3A SINE B2 1 180 -18 1 898 402 327 131 0 chr3 41103916 41104069 -118495714 - B4A SINE B4 -119 173 1 1 898 196 331 226 0 chr3 41104071 41104195 -118495588 - L2a LINE L2 -16 3410 3259 1 898 260 338 155 31 chr3 41104737 41104963 -118494820 - MLT1D LTR MaLR -134 371 118 1 898 365 292 69 129 chr3 41105972 41106322 -118493461 + RLTR18 LTR ERVK 149 477 -139 1 898 823 286 45 8 chr3 41106927 41107195 -118492588 - MER2 DNA MER2_type -62 283 6 1 898 276 30 0 0 chr3 41107276 41107309 -118492474 + (CA)n Simple_repeat Simple_repeat 2 34 0 1 898 570 245 23 70 chr3 41107346 41107517 -118492266 + RSINE1 SINE B4 3 165 0 1 898 438 270 167 0 chr3 41107797 41107923 -118491860 - Lx6 LINE L1 -56 7404 7258 1 898 1394 291 45 28 chr3 41107930 41108354 -118491429 - Lx6 LINE L1 -748 6712 6282 1 898 400 284 125 31 chr3 41108374 41108534 -118491249 - MLT1A0 LTR MaLR 0 365 191 1 898 240 250 15 30 chr3 41108529 41108595 -118491188 - MLT1A0 LTR MaLR -297 68 4 1 898 22 0 0 0 chr3 41108727 41108749 -118491034 + AT_rich Low_complexity Low_complexity 1 22 0 1 898 1006 203 66 0 chr3 41108761 41108958 -118490825 - B3 SINE B2 -5 211 2 2 898 2130 242 93 14 chr3 41108988 41109609 -118490174 + Lx8 LINE L1 6579 7248 -225 2 898 1933 231 67 10 chr3 41110285 41110796 -118488987 - Lx9 LINE L1 -7 7637 7098 2 898 372 248 57 38 chr3 41110794 41110899 -118488884 + Lx9 LINE L1 6666 6772 -872 2 898 728 242 0 0 chr3 41112153 41112318 -118487465 - B3A SINE B2 -33 165 1 2 898 335 314 65 7 chr3 41112823 41112977 -118486806 - L1M LINE L1 -752 5421 5259 2 898 244 257 14 0 chr3 41112981 41113055 -118486728 - BC1_Mm scRNA scRNA -70 82 8 2 898 605 294 17 0 chr3 41113214 41113391 -118486392 + B3A SINE B2 1 180 -18 2 898 739 194 7 7 chr3 41114138 41114273 -118485510 - RSINE1 SINE B4 -30 135 1 2 898 23 0 0 0 chr3 41114341 41114364 -118485419 + AT_rich Low_complexity Low_complexity 1 23 0 2 898 25 0 0 0 chr3 41114871 41114896 -118484887 + AT_rich Low_complexity Low_complexity 1 25 0 2 898 324 0 0 0 chr3 41115083 41115119 -118484664 + (CA)n Simple_repeat Simple_repeat 1 36 0 2 898 647 190 36 0 chr3 41115180 41115317 -118484466 - B1_Mus2 SINE Alu 0 147 6 2 898 532 304 35 22 chr3 41115318 41115550 -118484233 - B4A SINE B4 -57 235 1 2 898 392 288 37 29 chr3 41115639 41115775 -118484008 - MTEa LTR MaLR 0 379 243 2 898 392 233 272 37 chr3 41116443 41116686 -118483097 + RMER15 LTR ERVL 275 575 0 2 898 269 358 118 26 chr3 41116896 41117091 -118482692 - MIRb SINE MIR -26 242 30 2 898 27 0 0 0 chr3 41117312 41117339 -118482444 + AT_rich Low_complexity Low_complexity 1 27 0 2 898 301 129 58 23 chr3 41117394 41117481 -118482302 - Lx6 LINE L1 -63 7397 7308 2 898 2750 194 53 26 chr3 41117493 41118187 -118481596 + Lx6 LINE L1 5529 6243 -1217 2 898 446 290 23 8 chr3 41118185 41118317 -118481466 + Lx6 LINE L1 6534 6667 -793 2 898 708 242 84 34 chr3 41118333 41118572 -118481211 - Lx6 LINE L1 -1259 6201 5951 2 898 551 132 0 0 chr3 41118570 41118653 -118481130 - Lx5 LINE L1 -1146 5904 5822 2 898 1492 86 9 0 chr3 41118653 41118863 -118480920 - ORR1A2 LTR MaLR -115 212 1 2 898 11699 128 53 7 chr3 41118863 41120739 -118479044 - ORR1A2-int LTR MaLR 0 1963 2 2 898 1440 66 0 10 chr3 41120744 41120944 -118478839 - ORR1A2 LTR MaLR -8 319 122 2 898 1270 275 80 24 chr3 41121200 41121662 -118478121 - MLT1D LTR MaLR -8 497 10 2 898 201 211 0 0 chr3 41122917 41122969 -118476814 + CT-rich Low_complexity Low_complexity 3 54 0 2 898 864 133 0 0 chr3 41122990 41123170 -118476613 + (TC)n Simple_repeat Simple_repeat 1 180 0 2 898 387 0 0 0 chr3 41123388 41123431 -118476352 + (CA)n Simple_repeat Simple_repeat 1 43 0 2 898 527 98 11 0 chr3 41124340 41124432 -118475351 + (TCTA)n Simple_repeat Simple_repeat 4 96 0 2 898 596 252 7 14 chr3 41124492 41124633 -118475150 - ID_B1 SINE B4 -1 223 84 2 898 277 265 35 7 chr3 41125570 41125703 -118474080 + MIR SINE MIR 41 183 -25 2 898 484 299 14 14 chr3 41126446 41126592 -118473191 + ID_B1 SINE B4 72 217 -7 2 898 2312 97 99 32 chr3 41127687 41128090 -118471693 - RLTR23 LTR ERV1 0 430 1 2 898 359 270 159 0 chr3 41128278 41128404 -118471379 - B1_Mus2 SINE Alu -1 146 1 2 898 816 226 117 53 chr3 41129045 41129386 -118470397 + RMER13A LTR ERVK 98 460 -400 2 898 195 42 0 0 chr3 41129690 41129714 -118470069 + (CA)n Simple_repeat Simple_repeat 2 25 0 2 898 274 22 43 43 chr3 41129715 41129762 -118470021 + (CAGAGA)n Simple_repeat Simple_repeat 2 48 0 2 898 583 176 10 10 chr3 41130728 41130831 -118468952 - ID_B1 SINE B4 -26 198 96 2 898 965 293 148 28 chr3 41131001 41131561 -118468222 - Tigger7 DNA MER2_type -56 649 24 2 898 455 214 29 0 chr3 41131821 41131924 -118467859 - PB1D7 SINE Alu -5 115 10 2 898 383 283 35 9 chr3 41132492 41132606 -118467177 + B1F SINE Alu 1 117 -32 2 898 1764 205 65 57 chr3 41132621 41132718 -118467065 - RLTR16 LTR ERVK -26 479 401 2 898 228 35 0 0 chr3 41132718 41132747 -118467036 + (CA)n Simple_repeat Simple_repeat 2 30 0 2 898 1764 205 65 57 chr3 41132747 41133124 -118466659 - RLTR16 LTR ERVK -105 400 1 2 898 220 59 0 105 chr3 41133130 41133168 -118466615 + PB1 SINE Alu 87 120 -7 2 898 207 0 0 0 chr3 41133803 41133826 -118465957 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 2 898 324 297 91 52 chr3 41133985 41134216 -118465567 + LTR81A LTR ERV1? 6 245 -1105 2 898 315 183 97 97 chr3 41134537 41134640 -118465143 + MER31B LTR ERV1 1 103 -363 2 898 265 258 0 31 chr3 41134692 41134756 -118465027 + polypyrimidine Low_complexity Low_complexity 1 62 0 2 898 395 325 67 0 chr3 41134762 41134882 -118464901 - ID_B1 SINE B4 -17 207 80 2 898 1471 214 67 21 chr3 41134944 41135331 -118464452 + MTD LTR MaLR 1 405 -14 2 898 466 297 7 0 chr3 41135350 41135488 -118464295 + MER31B LTR ERV1 326 464 -2 2 898 827 275 73 0 chr3 41135775 41136008 -118463775 + B4 SINE B4 43 292 0 2 898 286 311 168 36 chr3 41136891 41137111 -118462672 - MLT1D LTR MaLR -252 253 5 2 898 1373 283 56 7 chr3 41137236 41137681 -118462102 - Lx8 LINE L1 -11 7462 6996 2 898 891 235 117 117 chr3 41137689 41138065 -118461718 - ORR1C2 LTR MaLR -8 376 1 2 898 732 243 20 0 chr3 41138067 41138219 -118461564 - Lx8 LINE L1 -478 6995 6841 2 898 420 167 211 9 chr3 41138234 41138343 -118461440 - RMER6C LTR ERVK -46 644 514 2 898 1254 144 205 46 chr3 41138314 41138641 -118461142 - RMER6C LTR ERVK -311 379 1 2 898 1627 256 56 19 chr3 41138643 41139073 -118460710 - Lx8 LINE L1 -644 6829 6384 2 898 845 100 0 8 chr3 41139203 41139334 -118460449 + (TTTC)n Simple_repeat Simple_repeat 3 132 0 2 898 606 244 109 43 chr3 41139336 41139520 -118460263 - ID_B1 SINE B4 -17 207 12 2 898 366 23 0 0 chr3 41139864 41139907 -118459876 + (TC)n Simple_repeat Simple_repeat 2 44 0 2 898 775 118 7 7 chr3 41139898 41140034 -118459749 + (TTC)n Simple_repeat Simple_repeat 2 137 0 2 898 213 39 0 0 chr3 41140411 41140437 -118459346 + (CA)n Simple_repeat Simple_repeat 2 27 0 2 898 657 231 87 5 chr3 41140588 41140788 -118458995 - L1_Mur2 LINE L1 -3648 2238 2029 2 898 42141 4 0 0 chr3 41140782 41147358 -118452425 - L1Md_A LINE L1 0 6582 7 2 898 401 262 101 54 chr3 41148082 41148231 -118451552 + RSINE1 SINE B4 2 157 -8 2 898 234 105 0 0 chr3 41148251 41148289 -118451494 + (CA)n Simple_repeat Simple_repeat 1 38 0 2 898 261 0 0 0 chr3 41149138 41149167 -118450616 + (TA)n Simple_repeat Simple_repeat 1 29 0 2 898 1695 21 5 0 chr3 41149250 41149442 -118450341 + B2_Mm1a SINE B2 1 193 0 2 898 5812 74 22 3 chr3 41149445 41150207 -118449576 + L1_Mus3 LINE L1 5862 6638 0 2 898 1225 198 194 9 chr3 41151476 41151812 -118447971 + MTD LTR MaLR 20 417 -2 2 898 298 286 111 40 chr3 41152328 41152482 -118447301 - MIRb SINE MIR -41 221 52 2 898 234 0 0 0 chr3 41152579 41152605 -118447178 + (TG)n Simple_repeat Simple_repeat 2 27 0 2 898 353 293 29 22 chr3 41152645 41152781 -118447002 - B3A SINE B2 -61 137 1 2 898 252 0 0 0 chr3 41153049 41153077 -118446706 + (TC)n Simple_repeat Simple_repeat 1 28 0 2 898 374 0 22 0 chr3 41153077 41153122 -118446661 + (CA)n Simple_repeat Simple_repeat 1 47 0 2 898 614 347 11 0 chr3 41153127 41153389 -118446394 - Lx9 LINE L1 -195 7449 7185 2 898 342 306 19 3 chr3 41153485 41153599 -118446184 - ID_B1 SINE B4 -174 118 1 2 898 412 224 0 12 chr3 41154316 41154402 -118445381 - B4 SINE B4 -204 88 4 2 898 258 32 0 0 chr3 41154903 41154934 -118444849 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2 898 637 244 0 89 chr3 41154938 41155118 -118444665 - RSINE1 SINE B4 0 165 2 2 898 502 302 99 68 chr3 41155787 41156202 -118443581 + MT2A LTR ERVL 1 428 -105 2 112 1024 216 44 0 chr3 41156424 41156628 -118443155 - B3 SINE B2 0 216 4 2 899 189 0 0 0 chr3 41156898 41156919 -118442864 + (A)n Simple_repeat Simple_repeat 1 21 0 2 899 225 0 0 0 chr3 41157284 41157309 -118442474 + (GGAAA)n Simple_repeat Simple_repeat 5 29 0 2 899 1039 227 279 0 chr3 41158470 41158796 -118440987 + Lx8 LINE L1 7053 7469 -4 2 899 545 257 0 0 chr3 41159031 41159144 -118440639 - PB1D9 SINE Alu -7 113 1 2 899 394 179 10 10 chr3 41159206 41159302 -118440481 + CT-rich Low_complexity Low_complexity 1 96 0 2 899 884 173 0 0 chr3 41159302 41159441 -118440342 - B1_Mus2 SINE Alu -6 141 3 2 899 454 285 8 0 chr3 41159751 41159881 -118439902 + B1F1 SINE Alu 3 133 -16 2 899 230 173 0 88 chr3 41159884 41159941 -118439842 + B1F SINE Alu 79 130 -19 2 899 269 267 0 0 chr3 41159959 41160019 -118439764 + B1F SINE Alu 62 121 -28 2 899 261 258 0 0 chr3 41159994 41160056 -118439727 + ID_B1 SINE B4 146 207 -17 2 899 252 132 75 0 chr3 41160790 41160843 -118438940 - MADE2 DNA Mariner -8 72 16 2 899 418 294 81 14 chr3 41160976 41161124 -118438659 + MER2 DNA MER2_type 1 158 -187 2 899 332 258 11 43 chr3 41161144 41161237 -118438546 + MER2 DNA MER2_type 242 331 -14 2 899 309 265 20 0 chr3 41161857 41161955 -118437828 + (TCTG)n Simple_repeat Simple_repeat 2 101 0 2 899 1359 71 27 11 chr3 41162064 41162249 -118437534 - B2_Mm2 SINE B2 -6 189 2 2 899 264 130 0 0 chr3 41162475 41162521 -118437262 + (CA)n Simple_repeat Simple_repeat 1 46 0 2 899 728 293 91 15 chr3 41162656 41162880 -118436903 - L1M1 LINE L1 -538 5762 5518 2 899 308 119 0 17 chr3 41162880 41162940 -118436843 + (TG)n Simple_repeat Simple_repeat 2 60 0 2 899 728 293 91 15 chr3 41162940 41162989 -118436794 - L1M1 LINE L1 -783 5517 5469 2 899 567 196 122 72 chr3 41163112 41163293 -118436490 - B2_Mm2 SINE B2 -4 191 2 2 899 221 171 0 24 chr3 41163802 41163844 -118435939 + CT-rich Low_complexity Low_complexity 3 43 0 2 899 252 300 101 7 chr3 41163958 41164071 -118435712 - B1F2 SINE Alu -7 110 1 2 899 323 339 0 18 chr3 41164071 41164116 -118435667 - B4 SINE B4 -207 85 43 3 899 400 223 0 31 chr3 41165126 41165223 -118434560 + PB1 SINE Alu 32 125 -2 3 899 241 278 174 26 chr3 41165511 41165666 -118434117 - MamGypLTR2c LTR Gypsy -54 1014 837 3 899 319 335 130 24 chr3 41166099 41166307 -118433476 - MamRep137 DNA TcMar? -163 281 52 3 899 1621 154 42 10 chr3 41166409 41166698 -118433085 + MTC LTR MaLR 113 410 -11 3 899 634 268 5 32 chr3 41166698 41166883 -118432900 + RMER5 LTR ERV1 289 468 -66 3 899 576 192 1 41 chr3 41166874 41167001 -118432782 - MTA_Mm LTR MaLR -270 126 1 3 899 541 270 65 41 chr3 41167006 41167176 -118432607 - RMER5 LTR ERV1 -249 285 112 3 899 398 249 23 0 chr3 41167233 41167406 -118432377 + CT-rich Low_complexity Low_complexity 2 178 0 3 899 281 128 64 0 chr3 41167681 41167728 -118432055 + B1F SINE Alu 43 92 -57 3 899 219 300 0 0 chr3 41168293 41168353 -118431430 + CT-rich Low_complexity Low_complexity 1 60 0 3 899 581 266 83 26 chr3 41169128 41169321 -118430462 - MIR SINE MIR -34 228 25 3 899 209 267 0 16 chr3 41169687 41169748 -118430035 + (CA)n Simple_repeat Simple_repeat 1 60 0 3 899 815 257 58 0 chr3 41170595 41170801 -118428982 - ID_B1 SINE B4 0 224 7 3 899 310 265 12 12 chr3 41171141 41171225 -118428558 + MLT1A1 LTR MaLR 317 400 -8 3 899 315 49 0 0 chr3 41171940 41171981 -118427802 + (TG)n Simple_repeat Simple_repeat 1 41 0 3 899 231 268 56 44 chr3 41172679 41172769 -118427014 - MLT1L LTR MaLR -2 608 518 3 899 398 245 21 21 chr3 41172806 41172902 -118426881 - MLT1L LTR MaLR -172 438 343 3 899 377 318 105 59 chr3 41172930 41173149 -118426634 - MLT1D LTR MaLR -13 492 227 3 899 231 304 33 86 chr3 41173210 41173361 -118426422 - MLT1D LTR MaLR -335 170 28 3 899 1842 210 71 31 chr3 41173372 41173783 -118426000 + RLTR26 LTR ERVK 2 431 -211 3 899 245 29 29 0 chr3 41173783 41173817 -118425966 + (CCA)n Simple_repeat Simple_repeat 2 36 0 3 899 1842 210 71 31 chr3 41173817 41173857 -118425926 + RLTR26 LTR ERVK 432 471 -171 3 899 750 217 37 51 chr3 41173871 41174085 -118425698 + RLTR26 LTR ERVK 431 641 -1 3 899 260 278 71 36 chr3 41174116 41174228 -118425555 - PB1D10 SINE Alu -1 116 1 3 899 1307 20 0 0 chr3 41174303 41174450 -118425333 - B1_Mm SINE Alu 0 147 1 3 899 228 300 21 32 chr3 41175587 41175680 -118424103 + RMER6B LTR ERVK 303 394 -67 3 899 614 257 105 0 chr3 41175748 41175900 -118423883 + ID_B1 SINE B4 2 169 -55 3 899 413 258 31 0 chr3 41175821 41175918 -118423865 + PB1D10 SINE Alu 10 109 -8 3 899 2127 109 81 9 chr3 41175933 41176256 -118423527 + ORR1A1 LTR MaLR 1 346 0 3 899 467 268 220 13 chr3 41176806 41176965 -118422818 - ID_B1 SINE B4 -31 193 2 3 899 194 150 0 24 chr3 41176992 41177033 -118422750 + CT-rich Low_complexity Low_complexity 1 40 0 3 899 281 266 214 27 chr3 41177052 41177164 -118422619 - RSINE1 SINE B4 -29 136 4 3 899 872 241 121 0 chr3 41179298 41179505 -118420278 + B4A SINE B4 3 234 -58 3 899 387 0 0 0 chr3 41179506 41179549 -118420234 + (CA)n Simple_repeat Simple_repeat 2 44 0 3 899 735 163 0 0 chr3 41179983 41180149 -118419634 + (TG)n Simple_repeat Simple_repeat 1 166 0 3 899 484 304 14 7 chr3 41180550 41180689 -118419094 - RMER15 LTR ERVL -14 561 422 3 899 930 221 98 5 chr3 41182987 41183192 -118416591 + ID_B1 SINE B4 1 224 0 3 899 2281 66 23 3 chr3 41183204 41183506 -118416277 + IAPLTR2b LTR ERVK 1 308 -19 3 899 863 224 68 0 chr3 41183590 41183782 -118416001 + B3 SINE B2 1 205 -11 3 899 1171 210 5 0 chr3 41184516 41184730 -118415053 - B3 SINE B2 0 216 2 3 899 21 71 0 0 chr3 41184830 41184872 -118414911 + AT_rich Low_complexity Low_complexity 1 42 0 3 899 391 277 36 0 chr3 41185025 41185108 -118414675 + ID_B1 SINE B4 12 97 -127 3 899 289 343 18 37 chr3 41185168 41185277 -118414506 + ID_B1 SINE B4 112 218 -6 3 899 32 26 0 0 chr3 41185458 41185497 -118414286 + AT_rich Low_complexity Low_complexity 1 39 0 3 899 1523 116 51 137 chr3 41185519 41185870 -118413913 + ORR1A4 LTR MaLR 1 321 -8 3 899 28 71 0 0 chr3 41186073 41186129 -118413654 + AT_rich Low_complexity Low_complexity 1 56 0 3 899 501 321 108 28 chr3 41186562 41186875 -118412908 + MER47B DNA MER2_type 12 417 -1 3 899 445 187 7 7 chr3 41186884 41187024 -118412759 + (TG)n Simple_repeat Simple_repeat 1 140 0 3 899 327 127 0 0 chr3 41187078 41187141 -118412642 + (GA)n Simple_repeat Simple_repeat 2 64 0 3 899 620 261 25 32 chr3 41187339 41187554 -118412229 + ORR1D2 LTR MaLR 1 367 -3 3 899 1349 230 133 15 chr3 41187657 41187988 -118411795 - MTEa LTR MaLR -8 371 2 3 899 574 291 86 9 chr3 41189402 41189624 -118410159 + Charlie23a DNA MER1_type 81 319 -20 3 899 750 250 280 27 chr3 41190080 41190380 -118409403 + MTEa LTR MaLR 1 376 -3 3 899 557 221 7 111 chr3 41190965 41191118 -118408665 + Lx8 LINE L1 6212 6348 -1125 3 899 739 227 0 62 chr3 41191118 41191278 -118408505 + B3A SINE B2 1 150 -48 3 899 513 32 0 0 chr3 41191285 41191348 -118408435 + (CA)n Simple_repeat Simple_repeat 1 63 0 3 899 2080 249 92 55 chr3 41191437 41191800 -118407983 + Lx8 LINE L1 6336 6732 -741 3 899 396 0 0 0 chr3 41191800 41191844 -118407939 + (GA)n Simple_repeat Simple_repeat 2 45 0 3 899 2080 249 92 55 chr3 41191844 41192241 -118407542 + Lx8 LINE L1 6733 7124 -349 3 899 195 42 0 0 chr3 41192280 41192304 -118407479 + (TG)n Simple_repeat Simple_repeat 1 24 0 3 899 183 42 0 0 chr3 41192480 41192504 -118407279 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 3 899 582 277 40 0 chr3 41192843 41192991 -118406792 - ID_B1 SINE B4 -3 221 68 3 899 282 214 172 19 chr3 41193075 41193166 -118406617 + PB1D7 SINE Alu 9 113 -7 3 899 465 273 154 5 chr3 41195158 41195346 -118404437 + B3 SINE B2 1 216 0 3 899 489 271 30 25 chr3 41195484 41195616 -118404167 + ID_B1 SINE B4 90 213 -11 3 899 938 288 66 93 chr3 41195630 41196250 -118403533 + L1MA7 LINE L1 5336 5938 -353 3 899 292 279 0 48 chr3 41196443 41196526 -118403257 + ID4_ SINE ID 2 80 -3 3 899 187 232 108 68 chr3 41197354 41197428 -118402355 - L2a LINE L2 -7 3419 3343 3 899 3371 82 18 26 chr3 41197621 41198113 -118401670 - L1Md_F2 LINE L1 -3 6579 6092 3 899 2832 55 0 0 chr3 41198113 41198461 -118401322 + L1Md_F2 LINE L1 5738 6085 -497 3 899 301 292 118 39 chr3 41198486 41198632 -118401151 + B3A SINE B2 15 174 -24 3 899 372 94 0 0 chr3 41198636 41198689 -118401094 + (CA)n Simple_repeat Simple_repeat 1 53 0 3 899 245 274 0 46 chr3 41198833 41198898 -118400885 + 4.5SRNA scRNA scRNA 25 86 -8 3 899 497 222 0 11 chr3 41198849 41198940 -118400843 + B1_Mur1 SINE Alu 43 132 -17 3 899 306 157 114 0 chr3 41199274 41199344 -118400439 - L1MC4 LINE L1 -1 8041 7964 3 899 395 177 0 10 chr3 41199379 41199476 -118400307 + (TA)n Simple_repeat Simple_repeat 2 97 0 3 899 632 131 160 69 chr3 41199736 41199753 -118400030 - B1_Mus1 SINE Alu 0 148 139 3 899 660 26 0 0 chr3 41199753 41199831 -118399952 + (CTTTG)n Simple_repeat Simple_repeat 2 79 0 3 899 632 131 160 69 chr3 41199831 41199944 -118399839 - B1_Mus1 SINE Alu -10 138 6 3 899 297 218 188 168 chr3 41199944 41199960 -118399823 - ID_B1 SINE B4 -13 211 73 3 899 742 269 20 8 chr3 41199968 41200181 -118399602 - B3A SINE B2 0 216 1 3 899 258 32 0 0 chr3 41202556 41202587 -118397196 + (TAA)n Simple_repeat Simple_repeat 2 32 0 3 899 265 317 29 10 chr3 41202623 41202725 -118397058 + L1MEd LINE L1 614 717 -5402 3 899 1907 120 8 107 chr3 41202727 41203091 -118396692 + ORR1A4 LTR MaLR 2 329 0 3 899 200 35 35 0 chr3 41203128 41203157 -118396626 + (CAAAA)n Simple_repeat Simple_repeat 1 30 0 3 899 292 286 13 25 chr3 41203225 41203304 -118396479 + RSINE1 SINE B4 3 80 -85 3 899 24 0 0 0 chr3 41203793 41203817 -118395966 + AT_rich Low_complexity Low_complexity 1 24 0 3 899 446 203 0 0 chr3 41204081 41204155 -118395628 - B4A SINE B4 -218 74 1 3 899 250 260 0 74 chr3 41204225 41204279 -118395504 - PB1D10 SINE Alu -67 50 1 3 899 682 244 8 0 chr3 41204279 41204358 -118395425 - ID SINE ID -143 81 2 3 899 24 32 0 0 chr3 41204599 41204630 -118395153 + AT_rich Low_complexity Low_complexity 1 31 0 3 899 1390 248 53 17 chr3 41204644 41205001 -118394782 - MTE2b LTR MaLR 0 379 10 3 899 1065 74 0 0 chr3 41205092 41205227 -118394556 + B1_Mus2 SINE Alu 1 135 -12 3 899 29 0 0 0 chr3 41205476 41205505 -118394278 + AT_rich Low_complexity Low_complexity 1 29 0 3 899 323 184 0 0 chr3 41205505 41205554 -118394229 + PB1D9 SINE Alu 24 72 -48 3 899 378 0 0 0 chr3 41205560 41205602 -118394181 + (CA)n Simple_repeat Simple_repeat 2 43 0 3 899 395 283 56 19 chr3 41205633 41205741 -118394042 - B4 SINE B4 -173 119 8 3 899 537 172 0 72 chr3 41206257 41206451 -118393332 + (TG)n Simple_repeat Simple_repeat 1 180 0 3 899 449 209 13 13 chr3 41206477 41206627 -118393156 + (TG)n Simple_repeat Simple_repeat 1 150 0 3 899 409 327 19 7 chr3 41206646 41206800 -118392983 + (TG)n Simple_repeat Simple_repeat 1 156 0 3 899 619 244 29 29 chr3 41206987 41207126 -118392657 - B3 SINE B2 -25 191 53 3 899 325 241 11 98 chr3 41207162 41207254 -118392529 - B3 SINE B2 -104 112 29 3 899 568 205 40 32 chr3 41208556 41208682 -118391101 + RSINE1 SINE B4 12 138 -27 3 899 366 23 0 0 chr3 41208686 41208729 -118391054 + (CA)n Simple_repeat Simple_repeat 1 43 0 3 899 7994 77 1 14 chr3 41209115 41210270 -118389513 - L1_Mus3 LINE L1 0 6638 5499 3 899 3129 174 48 44 chr3 41210442 41211141 -118388642 + RMER1B Other Other 282 1055 -11 3 899 774 290 6 0 chr3 41211638 41211821 -118387962 + ID_B1 SINE B4 26 209 -15 3 899 357 315 17 35 chr3 41211997 41212112 -118387671 + RSINE1 SINE B4 44 156 -9 3 899 28 0 0 0 chr3 41212170 41212198 -118387585 + AT_rich Low_complexity Low_complexity 1 28 0 3 899 814 260 86 53 chr3 41214252 41214613 -118385170 + MTE2b LTR MaLR 3 375 -4 4 899 556 275 29 7 chr3 41214691 41214830 -118384953 - RSINE1 SINE B4 -21 144 3 4 899 204 156 0 0 chr3 41215502 41215524 -118384259 + A-rich Low_complexity Low_complexity 1 22 0 4 899 1208 54 0 0 chr3 41215524 41215671 -118384112 + B1_Mm SINE Alu 1 147 0 4 899 204 156 0 0 chr3 41215671 41215693 -118384090 + A-rich Low_complexity Low_complexity 23 44 0 4 899 230 324 64 37 chr3 41215693 41215802 -118383981 - MTEa LTR MaLR -28 351 240 4 899 515 271 38 38 chr3 41215841 41215987 -118383796 + RSINE1 SINE B4 3 149 -16 4 899 369 0 0 0 chr3 41215987 41216028 -118383755 + (CA)n Simple_repeat Simple_repeat 1 41 0 4 899 714 239 93 33 chr3 41216042 41216224 -118383559 - MTEa LTR MaLR -173 206 14 4 899 672 175 0 201 chr3 41216326 41216505 -118383278 + B1_Mm SINE Alu 5 147 0 4 899 2030 133 48 151 chr3 41216944 41217422 -118382361 + RLTR23 LTR ERV1 2 430 0 4 899 309 167 50 0 chr3 41217535 41217595 -118382188 - B4A SINE B4 -18 274 212 4 899 507 123 0 0 chr3 41217712 41217793 -118381990 + (TG)n Simple_repeat Simple_repeat 2 82 0 4 899 235 351 73 20 chr3 41217804 41217955 -118381828 - Lx9 LINE L1 -183 7461 7303 4 899 756 273 20 30 chr3 41217960 41218160 -118381623 - B4A SINE B4 -94 198 1 4 899 389 252 100 10 chr3 41218172 41218272 -118381511 + MLT1C LTR MaLR 357 465 -2 4 899 312 27 0 0 chr3 41219075 41219112 -118380671 + (TG)n Simple_repeat Simple_repeat 1 37 0 4 899 987 244 5 14 chr3 41219121 41219341 -118380442 - ID_B1 SINE B4 -5 219 2 4 899 1250 192 5 0 chr3 41219465 41219689 -118380094 - URR1B DNA MER1_type 0 225 1 4 899 258 292 15 0 chr3 41219741 41219806 -118379977 + MTEa LTR MaLR 1 66 -313 4 899 242 250 0 68 chr3 41219786 41219859 -118379924 + MTEa LTR MaLR 296 363 -16 4 899 210 324 0 14 chr3 41220250 41220319 -118379464 + G-rich Low_complexity Low_complexity 5 72 0 4 899 309 293 90 12 chr3 41221249 41221415 -118378368 + L1MA6 LINE L1 6017 6195 -105 4 899 407 289 31 0 chr3 41221512 41221640 -118378143 + B1F1 SINE Alu 5 136 -13 4 899 684 257 186 42 chr3 41221647 41221980 -118377803 + Lx8 LINE L1 7070 7450 -23 4 899 24 0 0 0 chr3 41221986 41222010 -118377773 + AT_rich Low_complexity Low_complexity 1 24 0 4 899 598 125 10 10 chr3 41222013 41222110 -118377673 - B1_Mus2 SINE Alu -1 146 50 4 899 252 86 15 108 chr3 41222071 41222136 -118377647 - 4.5SRNA scRNA scRNA -8 86 28 4 899 363 282 91 91 chr3 41223451 41223681 -118376102 + B4 SINE B4 3 232 -60 4 899 242 338 15 0 chr3 41224044 41224112 -118375671 + ID SINE ID 8 76 -148 4 899 295 274 60 49 chr3 41224232 41224416 -118375367 + L1MC4 LINE L1 7375 7560 -482 4 899 587 264 39 0 chr3 41224617 41224772 -118375011 + RSINE1 SINE B4 5 165 0 4 899 22 0 0 0 chr3 41224812 41224834 -118374949 + AT_rich Low_complexity Low_complexity 1 22 0 4 899 737 204 29 0 chr3 41224900 41225037 -118374746 + B1_Mur1 SINE Alu 5 145 -4 4 899 338 273 35 26 chr3 41225068 41225181 -118374602 + PB1D10 SINE Alu 2 115 -2 4 899 246 32 0 0 chr3 41225933 41225964 -118373819 + (CAGA)n Simple_repeat Simple_repeat 4 34 0 4 899 216 97 0 0 chr3 41226176 41226207 -118373576 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 4 899 1172 98 6 0 chr3 41226211 41226385 -118373398 - Lx2 LINE L1 -1 6996 6822 4 899 666 37 0 0 chr3 41226423 41226504 -118373279 + (TTCTC)n Simple_repeat Simple_repeat 1 81 0 4 899 828 100 0 0 chr3 41226504 41226624 -118373159 + (TTTC)n Simple_repeat Simple_repeat 4 123 0 4 899 630 242 135 30 chr3 41227636 41227836 -118371947 - ID_B1 SINE B4 -2 222 2 4 899 1233 48 0 0 chr3 41228891 41229038 -118370745 - B1_Mus2 SINE Alu 0 147 1 4 899 261 284 19 56 chr3 41230242 41230350 -118369433 + PB1D9 SINE Alu 1 104 -45 4 899 216 67 0 0 chr3 41230556 41230586 -118369197 + (CAGAGA)n Simple_repeat Simple_repeat 4 33 0 4 899 327 260 27 0 chr3 41230592 41230665 -118369118 + PB1D10 SINE Alu 10 84 -33 4 899 542 177 200 8 chr3 41231199 41231324 -118368459 + B1_Mur4 SINE Alu 2 150 0 4 899 204 135 0 0 chr3 41231329 41231366 -118368417 + (A)n Simple_repeat Simple_repeat 1 37 0 4 899 665 106 0 9 chr3 41231379 41231484 -118368299 + (GGAGAA)n Simple_repeat Simple_repeat 6 109 0 4 899 1230 67 11 6 chr3 41231484 41231663 -118368120 + (GAA)n Simple_repeat Simple_repeat 1 180 0 4 899 342 0 0 0 chr3 41232456 41232494 -118367289 + (TTCA)n Simple_repeat Simple_repeat 1 38 0 4 899 320 130 14 0 chr3 41232553 41232622 -118367161 + (TC)n Simple_repeat Simple_repeat 2 71 0 4 899 299 140 3 79 chr3 41233019 41233098 -118366685 + PB1D10 SINE Alu 55 123 -4 4 899 212 0 36 0 chr3 41233239 41233267 -118366516 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 4 899 1093 88 0 20 chr3 41233267 41233417 -118366366 + B1_Mus1 SINE Alu 2 148 0 4 899 1790 181 125 21 chr3 41234973 41235267 -118364516 - MTD LTR MaLR 0 419 94 4 899 180 0 0 0 chr3 41235267 41235287 -118364496 + (CA)n Simple_repeat Simple_repeat 1 20 0 4 899 1790 181 125 21 chr3 41235287 41235369 -118364414 - MTD LTR MaLR -326 93 5 4 899 360 329 157 44 chr3 41236193 41236556 -118363227 - MLT1D LTR MaLR -10 495 92 4 899 304 185 185 0 chr3 41236626 41236707 -118363076 - MTE2a LTR MaLR 0 379 284 4 899 608 70 0 11 chr3 41236722 41236809 -118362974 + (GA)n Simple_repeat Simple_repeat 2 87 0 4 899 459 291 75 100 chr3 41236932 41237211 -118362572 - MLT1H2 LTR MaLR -29 460 189 4 899 211 163 47 0 chr3 41237575 41237618 -118362165 + PB1D7 SINE Alu 76 120 0 4 899 290 260 0 14 chr3 41238017 41238091 -118361692 + tRNA-Ala-GCY_ tRNA tRNA 2 74 -1 4 899 585 284 26 47 chr3 41238222 41238300 -118361483 + ID SINE ID 3 76 -148 4 899 260 282 77 84 chr3 41238300 41238443 -118361340 + B1F SINE Alu 2 143 -6 4 899 412 286 187 32 chr3 41238832 41239175 -118360608 - MLT1A1 LTR MaLR -12 396 1 4 899 391 284 9 0 chr3 41239462 41239571 -118360212 + PB1D9 SINE Alu 3 112 -8 4 899 333 0 0 0 chr3 41239628 41239665 -118360118 + (TG)n Simple_repeat Simple_repeat 2 38 0 4 899 822 287 144 9 chr3 41240589 41240923 -118358860 - MTEa LTR MaLR 0 379 1 4 899 311 269 9 28 chr3 41240952 41241059 -118358724 + B3 SINE B2 109 213 -3 4 899 946 66 0 7 chr3 41241166 41241303 -118358480 + B1_Mus1 SINE Alu 13 148 0 4 899 268 320 53 110 chr3 41241592 41241820 -118357963 - MIRb SINE MIR -3 265 51 4 899 405 0 0 0 chr3 41241844 41241889 -118357894 + (TC)n Simple_repeat Simple_repeat 2 46 0 4 899 413 129 0 11 chr3 41241889 41241983 -118357800 + (TG)n Simple_repeat Simple_repeat 1 93 0 4 899 305 323 0 0 chr3 41242542 41242638 -118357145 + B4 SINE B4 1 96 -196 4 899 275 290 0 14 chr3 41242693 41242763 -118357020 + B4A SINE B4 224 292 0 4 899 544 321 19 5 chr3 41242963 41243179 -118356604 - Tigger15a DNA TcMar -50 665 447 4 899 589 301 48 0 chr3 41244041 41244187 -118355596 + RSINE1 SINE B4 3 155 -10 4 899 825 309 60 38 chr3 41244432 41244850 -118354933 - MT2A LTR ERVL -106 427 1 4 899 1341 103 11 0 chr3 41245564 41245749 -118354034 - B2_Mm1t SINE B2 -5 188 2 4 899 432 0 0 0 chr3 41245752 41245800 -118353983 + (TTTG)n Simple_repeat Simple_repeat 1 48 0 4 899 1068 60 0 0 chr3 41245800 41245934 -118353849 - B1_Mus1 SINE Alu -13 135 2 4 899 1429 188 187 22 chr3 41246095 41246454 -118353329 - MTD LTR MaLR -1 418 1 4 899 721 266 19 7 chr3 41247118 41247273 -118352510 + B3A SINE B2 6 162 -36 4 899 789 106 7 26 chr3 41248759 41248914 -118350869 + (TCTA)n Simple_repeat Simple_repeat 3 154 0 4 899 195 42 0 0 chr3 41248941 41248965 -118350818 + (TC)n Simple_repeat Simple_repeat 2 25 0 4 899 321 26 0 0 chr3 41248995 41249033 -118350750 + (TCTA)n Simple_repeat Simple_repeat 2 39 0 4 899 252 0 0 0 chr3 41249055 41249083 -118350700 + (TC)n Simple_repeat Simple_repeat 2 29 0 4 899 195 42 0 0 chr3 41249113 41249137 -118350646 + (TC)n Simple_repeat Simple_repeat 2 25 0 4 899 396 224 48 65 chr3 41249149 41249167 -118350616 - B1_Mur1 SINE Alu -22 127 106 4 899 450 0 0 0 chr3 41249167 41249217 -118350566 + (TCTA)n Simple_repeat Simple_repeat 2 51 0 4 899 396 224 48 65 chr3 41249217 41249322 -118350461 - B1_Mur1 SINE Alu -44 105 7 4 899 289 275 86 86 chr3 41250486 41250637 -118349146 + B4A SINE B4 71 221 -71 4 899 674 217 22 0 chr3 41250505 41250643 -118349140 + B1_Mur1 SINE Alu 9 149 0 4 899 21 0 0 0 chr3 41251033 41251054 -118348729 + AT_rich Low_complexity Low_complexity 1 21 0 4 899 567 286 10 53 chr3 41251336 41251543 -118348240 - B3A SINE B2 0 198 1 4 899 273 89 0 0 chr3 41251979 41252024 -118347759 + (T)n Simple_repeat Simple_repeat 1 45 0 4 899 835 162 28 44 chr3 41252069 41252261 -118347522 + B3A SINE B2 5 186 -30 4 899 1660 137 152 76 chr3 41252527 41252868 -118346915 - ORR1B2 LTR MaLR 0 367 1 4 899 916 262 0 0 chr3 41253182 41253384 -118346399 - B3 SINE B2 -10 206 5 4 899 211 300 100 0 chr3 41253441 41253511 -118346272 - ID4 SINE ID -1 82 6 4 899 180 363 11 32 chr3 41254797 41254891 -118344892 - L3 LINE CR1 -198 4291 4200 4 899 758 128 8 23 chr3 41254990 41255118 -118344665 + B1_Mus2 SINE Alu 22 147 0 4 899 652 232 147 66 chr3 41255317 41255575 -118344208 - B4A SINE B4 -12 280 2 4 899 254 311 109 6 chr3 41256027 41256192 -118343591 - LTR37B LTR ERV1 -240 228 47 4 899 220 357 0 0 chr3 41256392 41256462 -118343321 + CT-rich Low_complexity Low_complexity 5 74 0 4 899 357 276 91 119 chr3 41256490 41256700 -118343083 - ID_B1 SINE B4 -19 205 2 4 899 1479 156 19 145 chr3 41257805 41258164 -118341619 + ORR1B1 LTR MaLR 81 394 0 5 899 479 282 148 14 chr3 41258169 41258378 -118341405 + B4A SINE B4 33 269 -23 5 899 235 279 16 0 chr3 41258396 41258457 -118341326 + (CA)n Simple_repeat Simple_repeat 1 62 0 5 899 270 261 0 33 chr3 41258456 41258547 -118341236 + GA-rich Low_complexity Low_complexity 3 90 0 5 899 266 217 164 36 chr3 41259145 41259255 -118340528 + MER53 DNA hAT 26 149 -44 5 899 192 27 26 51 chr3 41259275 41259314 -118340469 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 5 899 253 253 108 0 chr3 41259433 41259516 -118340267 - LTR50 LTR ERVL -611 184 93 5 899 4011 92 14 31 chr3 41260208 41260783 -118339000 - L1_Mus3 LINE L1 -3 6635 6071 5 899 1390 78 42 0 chr3 41260783 41260974 -118338809 + L1_Mus3 LINE L1 5868 6066 -572 5 899 1597 169 53 3 chr3 41260974 41261331 -118338452 - RCHARR1 DNA MER1_type -116 858 484 5 899 405 129 0 0 chr3 41261332 41261402 -118338381 + (TG)n Simple_repeat Simple_repeat 2 71 0 5 899 856 293 50 8 chr3 41261410 41261668 -118338115 - B4 SINE B4 -23 269 1 5 899 1739 238 55 39 chr3 41261668 41262155 -118337628 - RCHARR1 DNA MER1_type -478 496 2 5 899 1353 181 54 47 chr3 41262178 41262571 -118337212 - ORR1C1 LTR MaLR 0 367 19 5 899 1492 274 67 35 chr3 41262643 41262732 -118337051 - Lx8 LINE L1 -2 7471 7384 5 899 2882 82 31 5 chr3 41262732 41263122 -118336661 + MTB LTR MaLR 1 400 0 5 899 1492 274 67 35 chr3 41263122 41263603 -118336180 - Lx8 LINE L1 -90 7383 6883 5 899 724 293 103 36 chr3 41264138 41264622 -118335161 - MLT1F LTR MaLR 0 548 43 5 899 1068 252 60 83 chr3 41264648 41265046 -118334737 - MLT1A1 LTR MaLR -19 389 1 5 899 475 213 148 0 chr3 41267853 41267975 -118331808 + ID_B1 SINE B4 79 218 -6 5 899 218 179 18 0 chr3 41267978 41268034 -118331749 + (CA)n Simple_repeat Simple_repeat 2 58 0 5 899 195 308 43 11 chr3 41268378 41268470 -118331313 + MIRc SINE MIR 171 265 -3 5 899 385 209 96 78 chr3 41269058 41269224 -118330559 + MER110A LTR ERV1 2 170 -298 5 899 378 242 357 0 chr3 41269349 41269506 -118330277 + ID_B1 SINE B4 2 214 -10 5 899 2028 110 3 130 chr3 41269554 41269738 -118330045 - ORR1A4 LTR MaLR 0 329 164 5 899 1207 61 0 0 chr3 41269738 41269885 -118329898 + B1_Mus1 SINE Alu 2 148 0 5 899 2028 110 3 130 chr3 41269885 41270077 -118329706 - ORR1A4 LTR MaLR -166 163 1 5 899 22 0 0 0 chr3 41270501 41270523 -118329260 + AT_rich Low_complexity Low_complexity 1 22 0 5 899 3899 214 91 40 chr3 41270856 41272334 -118327449 - Lx6 LINE L1 -2 7458 5880 5 899 523 310 135 19 chr3 41272487 41272747 -118327036 + B4A SINE B4 3 292 0 5 899 180 0 0 0 chr3 41273502 41273522 -118326261 + (TTG)n Simple_repeat Simple_repeat 2 21 0 5 899 338 295 55 39 chr3 41273559 41273686 -118326097 + MTE2a LTR MaLR 26 154 -225 5 899 189 0 0 0 chr3 41273976 41273997 -118325786 + (CA)n Simple_repeat Simple_repeat 2 22 0 5 899 271 89 0 62 chr3 41274031 41274079 -118325704 + B1_Mur4 SINE Alu 98 142 -8 5 899 342 0 0 0 chr3 41274082 41274120 -118325663 + (GA)n Simple_repeat Simple_repeat 1 38 0 5 899 266 268 16 89 chr3 41274201 41274324 -118325459 - MER34 LTR ERV1 -388 154 41 5 899 281 274 14 0 chr3 41274325 41274398 -118325385 + ID4 SINE ID 10 83 0 5 899 537 174 0 39 chr3 41274492 41274615 -118325168 + B1_Mur2 SINE Alu 12 120 0 5 899 349 312 0 35 chr3 41274635 41274751 -118325032 + PB1D10 SINE Alu 5 116 -1 5 899 367 119 31 25 chr3 41274853 41274931 -118324852 + B3A SINE B2 8 83 -133 5 899 477 218 15 95 chr3 41275369 41275506 -118324277 + B3A SINE B2 64 189 -9 5 899 2746 46 49 0 chr3 41275506 41275852 -118323931 + L1_Mus1 LINE L1 6205 6567 0 5 899 551 249 65 6 chr3 41276348 41276518 -118323265 + B3A SINE B2 1 180 -18 5 899 575 300 138 72 chr3 41276599 41276947 -118322836 - Lx8 LINE L1 -10 7463 7093 5 899 272 296 29 39 chr3 41277083 41277185 -118322598 + PB1D10 SINE Alu 17 117 0 5 899 682 306 33 19 chr3 41277183 41277396 -118322387 + ID_B1 SINE B4 7 222 -2 5 899 21 36 0 0 chr3 41277404 41277432 -118322351 + AT_rich Low_complexity Low_complexity 1 28 0 5 899 324 48 0 0 chr3 41277471 41277513 -118322270 + (TG)n Simple_repeat Simple_repeat 1 42 0 5 899 1752 42 0 0 chr3 41277897 41278109 -118321674 + L1Md_A LINE L1 6370 6581 -1 5 899 351 179 0 0 chr3 41278716 41278783 -118321000 + (CATA)n Simple_repeat Simple_repeat 2 68 0 5 899 396 0 0 0 chr3 41278803 41278847 -118320936 + (TG)n Simple_repeat Simple_repeat 2 45 0 5 899 313 22 0 42 chr3 41279475 41279523 -118320260 + (CAT)n Simple_repeat Simple_repeat 2 47 0 5 899 225 215 14 84 chr3 41280875 41280946 -118318837 - ID4_ SINE ID -13 70 5 5 899 659 210 0 14 chr3 41282842 41282987 -118316796 - URR1A DNA MER1_type 0 226 84 5 899 189 0 0 0 chr3 41283291 41283312 -118316471 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 5 899 798 169 0 0 chr3 41283314 41283450 -118316333 - B1_Mus1 SINE Alu -6 142 7 5 899 871 266 9 0 chr3 41283760 41283978 -118315805 - ID_B1 SINE B4 -1 223 4 5 899 441 320 159 64 chr3 41285415 41285679 -118314104 - B4A SINE B4 -2 290 2 5 899 542 250 123 16 chr3 41286437 41286624 -118313159 + B3 SINE B2 7 213 -3 5 900 433 261 42 0 chr3 41287688 41287762 -118312021 + ID SINE ID 3 81 -143 5 900 257 267 139 0 chr3 41287762 41287848 -118311935 + PB1D10 SINE Alu 1 98 -19 5 900 382 157 0 24 chr3 41287853 41287938 -118311845 + GA-rich Low_complexity Low_complexity 1 83 0 5 900 867 137 12 6 chr3 41287960 41288122 -118311661 + GA-rich Low_complexity Low_complexity 3 165 0 5 900 565 26 13 0 chr3 41289243 41289320 -118310463 + B1_Mus2 SINE Alu 70 147 0 5 900 612 250 83 28 chr3 41289397 41289578 -118310205 - B3A SINE B2 -2 196 6 5 900 353 279 159 35 chr3 41290688 41290833 -118308950 + RSINE1 SINE B4 3 165 0 5 900 527 278 33 43 chr3 41290864 41291048 -118308735 + B3A SINE B2 1 182 -16 5 900 309 278 140 93 chr3 41291202 41291439 -118308344 + L1MC4 LINE L1 7264 7515 -527 5 900 286 303 0 0 chr3 41291439 41291515 -118308268 + ID2 SINE ID 2 77 -6 5 900 309 278 140 93 chr3 41291515 41291548 -118308235 + L1MC4 LINE L1 7516 7546 -496 5 900 2362 93 12 3 chr3 41291548 41291872 -118307911 - ORR1A2 LTR MaLR 0 327 1 5 900 309 278 140 93 chr3 41291872 41292021 -118307762 + L1MC4 LINE L1 7547 7704 -338 5 900 437 258 24 40 chr3 41292191 41292316 -118307467 + RSINE1 SINE B4 4 126 -39 5 900 576 200 101 45 chr3 41292738 41292916 -118306867 - L1MB3 LINE L1 -3 6180 5993 5 900 303 264 154 0 chr3 41292924 41293034 -118306749 - L1M4 LINE L1 -872 5274 5148 5 900 231 36 0 0 chr3 41293169 41293197 -118306586 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 5 900 834 261 149 50 chr3 41293656 41294079 -118305704 - MER31B LTR ERV1 0 466 2 5 900 428 245 41 14 chr3 41294174 41294319 -118305464 - MER31-int LTR ERV1 -729 4207 4059 5 900 652 305 37 5 chr3 41294323 41294514 -118305269 + B4A SINE B4 1 197 -95 5 900 291 204 0 0 chr3 41294543 41294592 -118305191 + RSINE1 SINE B4 15 63 -102 5 900 856 296 51 51 chr3 41294929 41295285 -118304498 - MER31-int LTR ERV1 -1186 3750 3395 5 900 387 293 21 50 chr3 41295412 41295552 -118304231 - B1F SINE Alu -8 141 6 5 900 22 0 0 0 chr3 41295565 41295587 -118304196 + AT_rich Low_complexity Low_complexity 1 22 0 5 900 216 0 0 0 chr3 41295587 41295611 -118304172 + (TG)n Simple_repeat Simple_repeat 1 24 0 5 900 339 237 0 0 chr3 41295641 41295717 -118304066 - MER31-int LTR ERV1 -1706 3230 3155 5 900 1125 202 20 0 chr3 41295736 41295939 -118303844 + B3 SINE B2 1 207 -9 5 900 545 244 59 54 chr3 41296006 41296227 -118303556 - ID_B1 SINE B4 0 224 3 5 900 1151 101 38 38 chr3 41296350 41296535 -118303248 - B2_Mm2 SINE B2 -9 186 2 5 900 567 191 50 42 chr3 41296544 41296664 -118303119 - B1_Mus2 SINE Alu -7 140 20 5 900 243 0 0 0 chr3 41296672 41296699 -118303084 + (CA)n Simple_repeat Simple_repeat 2 28 0 5 900 360 0 0 0 chr3 41296699 41296738 -118303045 + (GA)n Simple_repeat Simple_repeat 2 41 0 5 900 2545 138 82 10 chr3 41296802 41297300 -118302483 - RLTR20C LTR ERVK 0 534 1 5 900 567 318 58 51 chr3 41297448 41297740 -118302043 + MTE2b LTR MaLR 66 359 -20 5 900 553 82 464 0 chr3 41297859 41297956 -118301827 + B1_Mus1 SINE Alu 2 143 -5 5 900 657 0 0 0 chr3 41297960 41298033 -118301750 + (TAGA)n Simple_repeat Simple_repeat 1 73 0 5 900 1401 102 5 0 chr3 41298043 41298249 -118301534 + L1_Mus4 LINE L1 6429 6635 -1 5 900 24 0 0 0 chr3 41298251 41298275 -118301508 + AT_rich Low_complexity Low_complexity 1 24 0 5 900 262 299 15 30 chr3 41298326 41298457 -118301326 - MER31-int LTR ERV1 -2728 2628 2500 5 900 528 292 15 0 chr3 41298731 41298868 -118300915 + ID_B1 SINE B4 80 218 -6 5 900 578 176 8 0 chr3 41298911 41299030 -118300753 + CT-rich Low_complexity Low_complexity 3 122 0 5 900 2110 290 65 74 chr3 41299033 41299095 -118300688 - MER31-int LTR ERV1 -3116 1820 1759 5 900 2151 133 3 27 chr3 41299095 41299428 -118300355 + ORR1A2 LTR MaLR 1 325 -2 5 900 2110 290 65 74 chr3 41299428 41299889 -118299894 - MER31-int LTR ERV1 -3178 1758 1302 5 900 2505 76 165 3 chr3 41299889 41300259 -118299524 + RLTR23 LTR ERV1 1 430 0 5 900 2110 290 65 74 chr3 41300259 41301065 -118298718 - MER31-int LTR ERV1 -3635 1301 505 5 900 546 287 48 6 chr3 41301214 41301382 -118298401 + ID_B1 SINE B4 12 186 -38 5 900 308 240 22 65 chr3 41301428 41301566 -118298217 + GA-rich Low_complexity Low_complexity 3 134 0 5 900 449 261 34 0 chr3 41302126 41302245 -118297538 + ID_B1 SINE B4 9 131 -93 5 900 370 307 359 62 chr3 41302236 41302520 -118297263 - MER31B LTR ERV1 -98 368 1 5 900 1646 128 66 20 chr3 41303610 41303914 -118295869 - ORR1B1 LTR MaLR -36 358 41 5 900 272 65 0 42 chr3 41303967 41304015 -118295768 + (TTTTTG)n Simple_repeat Simple_repeat 3 48 0 5 900 334 291 97 0 chr3 41304225 41304328 -118295455 + RSINE1 SINE B4 53 165 0 5 900 297 258 92 10 chr3 41304364 41304462 -118295321 + PB1D7 SINE Alu 1 106 -14 5 900 367 195 24 16 chr3 41304523 41304648 -118295135 + GA-rich Low_complexity Low_complexity 2 127 0 5 900 965 207 19 24 chr3 41305212 41305420 -118294363 + B3 SINE B2 1 207 -9 5 900 891 272 40 0 chr3 41305455 41305705 -118294078 + MTE2b LTR MaLR 1 260 -119 6 900 310 70 53 0 chr3 41305916 41305973 -118293810 + (CATA)n Simple_repeat Simple_repeat 2 61 0 6 900 342 0 0 0 chr3 41305981 41306019 -118293764 + (GA)n Simple_repeat Simple_repeat 1 38 0 6 900 559 198 9 0 chr3 41306242 41306358 -118293425 + B3 SINE B2 35 151 -65 6 900 296 289 67 131 chr3 41306287 41306476 -118293307 - MT2A LTR ERVL -184 349 168 6 900 378 0 0 0 chr3 41306476 41306518 -118293265 + (TTA)n Simple_repeat Simple_repeat 1 42 0 6 900 1774 136 48 7 chr3 41306528 41306817 -118292966 - Lx4A LINE L1 -1 7057 6757 6 900 296 289 67 131 chr3 41306817 41306899 -118292884 - MT2A LTR ERVL -366 167 85 6 900 420 256 79 16 chr3 41306846 41306973 -118292810 - MTE2a LTR MaLR -242 137 3 6 900 240 59 0 0 chr3 41307111 41307145 -118292638 + (TTGG)n Simple_repeat Simple_repeat 2 35 0 6 900 1242 41 0 0 chr3 41307156 41307303 -118292480 - B1_Mm SINE Alu 0 147 1 6 900 278 257 14 0 chr3 41307762 41307832 -118291951 + ID4 SINE ID 2 72 -11 6 900 302 253 35 0 chr3 41310048 41310135 -118289648 + ID_B1 SINE B4 135 224 0 6 900 1324 263 117 63 chr3 41310737 41311082 -118288701 - Lx8 LINE L1 0 7473 7108 6 900 2228 96 38 6 chr3 41311082 41311396 -118288387 - ORR1A2 LTR MaLR -3 324 1 6 900 1324 263 117 63 chr3 41311396 41311573 -118288210 - Lx8 LINE L1 -366 7107 6923 6 900 1032 231 39 0 chr3 41311607 41311815 -118287968 + B3 SINE B2 1 216 0 6 900 415 286 88 18 chr3 41311962 41312133 -118287650 + B4A SINE B4 90 272 -20 6 900 608 256 0 70 chr3 41312347 41312519 -118287264 + RSINE1 SINE B4 3 162 -3 6 900 437 151 16 16 chr3 41312574 41312695 -118287088 + (CA)n Simple_repeat Simple_repeat 1 121 0 6 900 298 265 15 0 chr3 41312791 41312859 -118286924 + ID4_ SINE ID 5 73 -10 6 900 267 79 0 0 chr3 41313897 41313935 -118285848 + (TG)n Simple_repeat Simple_repeat 1 38 0 6 900 1065 191 48 41 chr3 41313955 41314223 -118285560 - B4 SINE B4 -18 274 5 6 900 342 0 0 0 chr3 41314569 41314607 -118285176 + (CA)n Simple_repeat Simple_repeat 2 39 0 6 900 205 314 0 0 chr3 41314944 41314995 -118284788 + polypurine Low_complexity Low_complexity 3 53 0 6 900 345 35 16 49 chr3 41315196 41315257 -118284526 + (TTTG)n Simple_repeat Simple_repeat 2 60 0 6 900 320 232 193 44 chr3 41315371 41315506 -118284277 - RSINE1 SINE B4 -6 159 5 6 900 325 269 43 0 chr3 41315819 41315912 -118283871 - PB1D7 SINE Alu -22 98 2 6 900 651 317 0 46 chr3 41316368 41316586 -118283197 - ID_B1 SINE B4 -15 209 2 6 900 347 297 0 65 chr3 41316592 41316700 -118283083 - PB1D7 SINE Alu -19 101 1 6 900 308 260 67 77 chr3 41317556 41317660 -118282123 - PB1D7 SINE Alu -17 103 1 6 900 731 250 5 27 chr3 41318643 41318828 -118280955 + B3A SINE B2 2 182 -16 6 900 229 284 84 66 chr3 41318956 41319122 -118280661 + MLT1A0 LTR MaLR 32 200 -165 6 900 21 36 0 0 chr3 41319384 41319412 -118280371 + AT_rich Low_complexity Low_complexity 1 28 0 6 900 1149 62 21 0 chr3 41319414 41319558 -118280225 + B1_Mm SINE Alu 1 147 0 6 900 192 77 0 0 chr3 41319581 41319607 -118280176 + (TA)n Simple_repeat Simple_repeat 2 27 0 6 900 726 190 135 42 chr3 41319660 41319852 -118279931 + ID_B1 SINE B4 1 210 -14 6 900 798 65 16 8 chr3 41319856 41319979 -118279804 + (GGAA)n Simple_repeat Simple_repeat 2 125 0 6 900 1736 251 14 21 chr3 41320247 41320674 -118279109 + Lx6 LINE L1 7036 7459 -1 6 900 997 269 153 77 chr3 41320794 41321419 -118278364 + L1ME5 LINE L1 5258 5946 -248 6 900 912 233 63 106 chr3 41321419 41321721 -118278062 + B4A SINE B4 4 292 0 6 900 222 37 0 0 chr3 41321729 41321756 -118278027 + (TG)n Simple_repeat Simple_repeat 2 28 0 6 900 339 130 0 0 chr3 41321756 41321809 -118277974 + (TA)n Simple_repeat Simple_repeat 1 54 0 6 900 997 269 153 77 chr3 41321809 41322031 -118277752 + L1ME5 LINE L1 5951 6179 -15 6 900 195 42 0 0 chr3 41322120 41322144 -118277639 + (TAAAA)n Simple_repeat Simple_repeat 1 24 0 6 900 746 316 28 9 chr3 41322204 41322421 -118277362 + ID_B1 SINE B4 4 224 0 6 900 226 238 198 9 chr3 41322536 41322642 -118277141 + L1MC3 LINE L1 6919 7044 -741 6 900 617 110 10 0 chr3 41322971 41323071 -118276712 + (TTCC)n Simple_repeat Simple_repeat 1 101 0 6 900 342 307 0 0 chr3 41323373 41323448 -118276335 + PB1 SINE Alu 4 78 -49 6 900 483 90 0 0 chr3 41323494 41323572 -118276211 + (CATA)n Simple_repeat Simple_repeat 2 79 0 6 900 1311 131 29 67 chr3 41323575 41323813 -118275970 + RMER13A LTR ERVK 1 229 -631 6 900 1466 130 141 50 chr3 41323812 41324152 -118275631 + RMER13A LTR ERVK 369 739 -121 6 900 396 242 134 55 chr3 41324170 41324297 -118275486 + RSINE1 SINE B4 4 140 -25 6 900 539 245 111 65 chr3 41324342 41324648 -118275135 + L1MC3 LINE L1 7441 7760 -25 6 900 332 293 15 96 chr3 41324721 41324801 -118274982 - B3A SINE B2 -10 188 113 6 900 943 171 166 0 chr3 41324801 41324994 -118274789 + URR1B DNA MER1_type 1 225 0 6 900 332 293 15 96 chr3 41324994 41325049 -118274734 - B3A SINE B2 -86 112 64 6 900 242 345 80 0 chr3 41325381 41325494 -118274289 + ID_B1 SINE B4 86 207 -17 6 900 234 0 0 0 chr3 41325497 41325523 -118274260 + (TTAA)n Simple_repeat Simple_repeat 2 27 0 6 900 400 48 16 16 chr3 41327204 41327268 -118272515 + (CAAAAA)n Simple_repeat Simple_repeat 3 66 0 6 900 711 206 7 22 chr3 41327398 41327537 -118272246 + B1_Mus1 SINE Alu 1 137 -11 6 900 497 296 13 38 chr3 41327570 41327728 -118272055 + RSINE1 SINE B4 12 165 0 6 900 21 57 0 0 chr3 41327737 41327772 -118272011 + AT_rich Low_complexity Low_complexity 1 35 0 6 900 800 292 18 0 chr3 41328086 41328305 -118271478 - ID_B1 SINE B4 -1 223 1 6 900 510 184 117 0 chr3 41328814 41328917 -118270866 + RSINE1 SINE B4 1 115 -50 6 900 200 222 0 0 chr3 41328973 41329018 -118270765 + A-rich Low_complexity Low_complexity 1 45 0 6 900 1065 226 55 16 chr3 41329033 41329289 -118270494 - MTE2a LTR MaLR 0 379 114 6 900 1895 158 29 53 chr3 41329282 41329657 -118270126 + ORR1C1 LTR MaLR 12 377 -1 6 900 285 202 185 46 chr3 41329657 41329743 -118270040 - MTE2a LTR MaLR -275 104 1 6 900 213 132 0 0 chr3 41330498 41330536 -118269247 + (TTTA)n Simple_repeat Simple_repeat 4 41 0 6 900 860 264 9 14 chr3 41330538 41330753 -118269030 - ID_B1 SINE B4 -9 215 2 6 900 1132 55 0 58 chr3 41331143 41331298 -118268485 + B1_Mus2 SINE Alu 2 147 0 6 900 311 318 0 33 chr3 41331314 41331405 -118268378 + RSINE1 SINE B4 44 131 -34 6 900 396 216 10 40 chr3 41331474 41331575 -118268208 + B3A SINE B2 1 98 -100 6 900 459 0 0 0 chr3 41331594 41331645 -118268138 + (CA)n Simple_repeat Simple_repeat 2 52 0 6 900 405 0 0 0 chr3 41331694 41331739 -118268044 + (CA)n Simple_repeat Simple_repeat 2 46 0 6 900 298 223 7 148 chr3 41331906 41331919 -118267864 - ORR1D2 LTR MaLR -4 375 367 6 900 3447 93 35 48 chr3 41331919 41332483 -118267300 - RLTR31B_Mm LTR ERVK 0 557 1 6 900 1342 203 83 39 chr3 41332483 41332822 -118266961 - ORR1D2 LTR MaLR -13 366 6 6 900 562 248 0 15 chr3 41332845 41332980 -118266803 + Lx8 LINE L1 6597 6729 -744 6 900 775 231 143 19 chr3 41333322 41333538 -118266245 - MTEb LTR MaLR -9 370 128 6 900 400 207 172 0 chr3 41333805 41333892 -118265891 + B1_Mm SINE Alu 45 146 -1 6 900 342 324 136 23 chr3 41334248 41334469 -118265314 - L2c LINE L2 -57 3330 3085 6 900 293 246 14 14 chr3 41335096 41335166 -118264617 - Charlie1a DNA MER1_type -1 1454 1385 6 900 1027 222 24 5 chr3 41335241 41335449 -118264334 + ID_B1 SINE B4 1 212 -12 6 900 970 223 41 18 chr3 41336866 41337089 -118262694 + ID_B1 SINE B4 1 220 -4 6 900 316 358 58 72 chr3 41337320 41337736 -118262047 - L2b LINE L2 -11 3364 2955 6 900 195 255 21 0 chr3 41337820 41337867 -118261916 + MER5B DNA MER1_type 131 178 0 6 900 295 262 79 32 chr3 41337886 41338012 -118261771 - L2b LINE L2 -512 2907 2776 6 900 486 263 34 0 chr3 41338220 41338249 -118261534 - RSINE1 SINE B4 -2 163 134 6 900 461 94 0 12 chr3 41338249 41338335 -118261448 + (CA)n Simple_repeat Simple_repeat 2 86 0 6 900 486 263 34 0 chr3 41338335 41338423 -118261360 - RSINE1 SINE B4 -32 133 43 6 900 721 264 0 0 chr3 41338514 41338654 -118261129 + B1F1 SINE Alu 3 142 -7 6 900 302 299 28 0 chr3 41338692 41338799 -118260984 + L1ME2z LINE L1 5767 5876 -568 6 900 246 325 0 13 chr3 41338885 41338963 -118260820 + GA-rich Low_complexity Low_complexity 3 79 0 6 900 888 258 119 75 chr3 41339027 41339388 -118260395 - MTE2b LTR MaLR 0 379 3 6 900 330 291 70 0 chr3 41339572 41339658 -118260125 + RSINE1 SINE B4 3 94 -71 6 900 594 28 0 0 chr3 41339679 41339751 -118260032 + (CA)n Simple_repeat Simple_repeat 2 73 0 6 900 591 164 131 66 chr3 41339861 41339877 -118259906 + B1_Mm SINE Alu 2 14 -133 6 900 2482 101 0 0 chr3 41339877 41340204 -118259579 - ORR1A2 LTR MaLR 0 327 1 6 900 591 164 131 66 chr3 41340204 41340324 -118259459 + B1_Mm SINE Alu 15 147 0 6 900 194 0 39 0 chr3 41340326 41340352 -118259431 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 6 900 696 259 73 24 chr3 41340627 41340833 -118258950 + ID_B1 SINE B4 2 217 -7 6 900 696 248 14 7 chr3 41340863 41341009 -118258774 + RSINE1 SINE B4 1 147 -18 6 900 980 224 0 15 chr3 41341271 41341466 -118258317 + B3 SINE B2 1 192 -24 6 900 186 43 0 0 chr3 41341479 41341502 -118258281 + (TAAAA)n Simple_repeat Simple_repeat 5 27 0 6 900 314 378 0 0 chr3 41341668 41341779 -118258004 + RSINE1 SINE B4 45 155 -10 6 900 23 0 0 0 chr3 41341810 41341833 -118257950 + AT_rich Low_complexity Low_complexity 1 23 0 6 900 470 266 0 52 chr3 41341965 41342080 -118257703 - PB1D10 SINE Alu 0 117 9 6 900 301 268 227 68 chr3 41342080 41342097 -118257686 - ID_B1 SINE B4 0 224 72 6 900 513 0 0 0 chr3 41342275 41342332 -118257451 + (TG)n Simple_repeat Simple_repeat 1 57 0 6 900 474 259 122 73 chr3 41342359 41342415 -118257368 - ID_B1 SINE B4 -12 280 187 6 900 886 28 0 0 chr3 41342415 41342522 -118257261 - B1_Mm SINE Alu 0 147 41 7 900 474 259 122 73 chr3 41342522 41342629 -118257154 - ID_B1 SINE B4 -12 186 2 6 900 462 322 63 68 chr3 41342643 41343061 -118256722 - MLT1F LTR MaLR -4 544 94 7 900 270 307 22 59 chr3 41343337 41343472 -118256311 + ID_B1 SINE B4 11 140 -84 7 900 335 127 0 16 chr3 41343486 41343550 -118256233 + (GA)n Simple_repeat Simple_repeat 1 63 0 7 900 388 301 58 0 chr3 41343559 41343662 -118256121 + PB1D7 SINE Alu 4 112 -8 7 900 1063 109 7 7 chr3 41343671 41343818 -118255965 + B1_Mus1 SINE Alu 2 148 0 7 900 678 47 0 0 chr3 41343867 41343953 -118255830 + (GGGGA)n Simple_repeat Simple_repeat 1 86 0 7 900 22 35 0 0 chr3 41344585 41344614 -118255169 + AT_rich Low_complexity Low_complexity 1 29 0 7 900 732 208 40 11 chr3 41344683 41344858 -118254925 + B3A SINE B2 3 182 -16 7 900 299 239 115 63 chr3 41344956 41345130 -118254653 - B2_Mm2 SINE B2 -3 192 10 7 900 711 245 7 0 chr3 41344993 41345132 -118254651 - RSINE1 SINE B4 -17 148 9 7 900 212 263 18 0 chr3 41346912 41346969 -118252814 + GA-rich Low_complexity Low_complexity 2 59 0 7 900 390 261 66 16 chr3 41347200 41347321 -118252462 + B1F SINE Alu 22 148 -1 7 900 282 276 197 31 chr3 41347505 41347632 -118252151 + ID_B1 SINE B4 73 220 -4 7 900 230 274 16 16 chr3 41347847 41347910 -118251873 - ID_B1 SINE B4 -79 145 83 7 900 1554 285 55 15 chr3 41349161 41349777 -118250006 - L1MD1 LINE L1 -10 6232 5592 7 900 255 209 164 0 chr3 41349834 41349901 -118249882 + RMER15 LTR ERVL 57 134 -441 7 900 490 248 92 28 chr3 41350185 41350326 -118249457 - RMER15 LTR ERVL -425 150 1 7 900 344 227 184 17 chr3 41350392 41350571 -118249212 - L1MD1 LINE L1 -852 5507 5299 7 900 267 157 0 0 chr3 41350582 41350633 -118249150 + (TA)n Simple_repeat Simple_repeat 1 51 0 7 900 231 229 32 16 chr3 41350711 41350773 -118249010 - ID SINE ID -159 65 3 7 900 325 317 15 82 chr3 41350888 41351022 -118248761 + MT2B LTR ERVL 133 257 -344 7 900 895 128 14 35 chr3 41350927 41351061 -118248722 + B1_Mur4 SINE Alu 9 144 -6 7 900 288 70 0 0 chr3 41351061 41351104 -118248679 + (CCAA)n Simple_repeat Simple_repeat 1 43 0 7 900 216 0 0 0 chr3 41351119 41351143 -118248640 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 7 900 470 344 22 26 chr3 41351447 41351674 -118248109 + MIRb SINE MIR 26 251 -17 7 900 432 67 5 21 chr3 41351743 41351857 -118247926 - B2_Mm2 SINE B2 -1 194 47 7 900 1385 74 11 0 chr3 41351886 41352062 -118247721 - B2_Mm1t SINE B2 -15 178 1 7 900 444 157 525 21 chr3 41352095 41352238 -118247545 - B3 SINE B2 0 216 2 7 900 347 200 99 12 chr3 41352515 41352596 -118247187 - RSINE1 SINE B4 -67 98 11 7 900 225 340 0 0 chr3 41352661 41352714 -118247069 + ID4_ SINE ID 3 55 -28 7 900 398 279 57 31 chr3 41353275 41353434 -118246349 + RSINE1 SINE B4 3 165 0 7 900 281 178 0 0 chr3 41353563 41353608 -118246175 - PB1D10 SINE Alu -60 57 13 7 900 1176 64 0 0 chr3 41353806 41353946 -118245837 + B1_Mus1 SINE Alu 2 141 -7 7 900 188 86 29 0 chr3 41353952 41353987 -118245796 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 7 900 222 164 32 32 chr3 41354920 41354983 -118244800 + CT-rich Low_complexity Low_complexity 2 64 0 7 900 288 261 22 22 chr3 41354984 41355074 -118244709 - B1_Mur3 SINE Alu -1 148 59 7 900 822 207 104 0 chr3 41355884 41356077 -118243706 - B3 SINE B2 -2 214 2 7 900 562 214 61 54 chr3 41356099 41356247 -118243536 - B1_Mur1 SINE Alu 0 149 1 7 900 1223 96 6 0 chr3 41356377 41356543 -118243240 + B2_Mm1t SINE B2 1 167 -26 7 900 432 88 12 0 chr3 41356560 41356623 -118243160 + B2_Mm2 SINE B2 47 115 -83 7 900 30 27 0 0 chr3 41356637 41356674 -118243109 + AT_rich Low_complexity Low_complexity 1 37 0 7 900 405 0 0 0 chr3 41357515 41357560 -118242223 + (TTA)n Simple_repeat Simple_repeat 1 45 0 7 900 360 302 17 25 chr3 41357888 41358007 -118241776 + ID_B1 SINE B4 81 198 -26 7 900 654 202 23 8 chr3 41357900 41358019 -118241764 + B1_Mur4 SINE Alu 13 134 -16 7 900 285 29 0 0 chr3 41358019 41358053 -118241730 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 7 900 195 197 72 43 chr3 41358503 41358572 -118241211 - L2 LINE L2 -1257 2162 2092 7 900 459 276 181 0 chr3 41358576 41358703 -118241080 + RSINE1 SINE B4 3 152 -13 7 900 30 0 0 0 chr3 41358718 41358748 -118241035 + AT_rich Low_complexity Low_complexity 1 30 0 7 900 940 224 86 140 chr3 41358882 41359267 -118240516 + MTB LTR MaLR 1 364 -36 7 900 22 35 0 0 chr3 41359277 41359306 -118240477 + GC_rich Low_complexity Low_complexity 1 29 0 7 900 330 311 101 15 chr3 41359937 41360136 -118239647 - ID_B1 SINE B4 -8 216 1 7 900 495 140 51 7 chr3 41360598 41360735 -118239048 + CT-rich Low_complexity Low_complexity 1 143 0 7 900 396 0 0 0 chr3 41360760 41360804 -118238979 + (CA)n Simple_repeat Simple_repeat 2 45 0 7 900 350 209 219 34 chr3 41361459 41361578 -118238205 + B1F SINE Alu 9 149 0 7 900 317 351 0 0 chr3 41361763 41361857 -118237926 - PB1D10 SINE Alu -21 96 3 7 900 256 364 90 30 chr3 41361866 41362033 -118237750 - MER5A DNA MER1_type -1 188 12 7 900 1546 28 44 0 chr3 41362110 41362292 -118237491 + B2_Mm1t SINE B2 2 191 -2 7 900 249 33 0 0 chr3 41363554 41363584 -118236199 + (CATA)n Simple_repeat Simple_repeat 4 33 0 7 900 331 303 0 0 chr3 41363661 41363737 -118236046 - ID4_ SINE ID -2 81 6 7 900 443 227 18 35 chr3 41364465 41364579 -118235204 + PB1D9 SINE Alu 4 115 -5 7 900 432 0 0 0 chr3 41364699 41364747 -118235036 + (TG)n Simple_repeat Simple_repeat 2 49 0 7 900 227 309 140 30 chr3 41364772 41364872 -118234911 - PB1 SINE Alu -2 125 15 7 900 256 48 0 45 chr3 41364888 41364932 -118234851 + (TCCCC)n Simple_repeat Simple_repeat 5 46 0 7 900 246 263 35 0 chr3 41364933 41364990 -118234793 - ID2 SINE ID 0 83 25 7 900 582 219 18 30 chr3 41365030 41365195 -118234588 - Lx6 LINE L1 -30 7430 7268 7 900 1280 27 7 0 chr3 41365195 41365341 -118234442 + B1_Mus2 SINE Alu 1 147 0 7 900 292 199 12 60 chr3 41365364 41365378 -118234405 + MT2B LTR ERVL 157 217 -367 7 900 517 121 31 21 chr3 41365378 41365495 -118234288 + B1_Mus1 SINE Alu 2 121 -26 7 900 702 241 107 5 chr3 41365729 41365925 -118233858 - B3 SINE B2 0 216 1 7 900 222 105 0 0 chr3 41366080 41366118 -118233665 + (TCTCTG)n Simple_repeat Simple_repeat 3 40 0 7 900 333 0 0 0 chr3 41366118 41366155 -118233628 + (TG)n Simple_repeat Simple_repeat 1 37 0 7 900 29 78 0 0 chr3 41367361 41367425 -118232358 + GC_rich Low_complexity Low_complexity 1 64 0 7 900 23 33 0 0 chr3 41367491 41367521 -118232262 + GC_rich Low_complexity Low_complexity 1 30 0 7 900 21 0 0 0 chr3 41367724 41367745 -118232038 + GC_rich Low_complexity Low_complexity 1 21 0 7 900 21 36 0 0 chr3 41369204 41369232 -118230551 + GC_rich Low_complexity Low_complexity 1 28 0 7 900 21 36 0 0 chr3 41369526 41369554 -118230229 + GC_rich Low_complexity Low_complexity 1 28 0 7 900 25 51 0 0 chr3 41369574 41369613 -118230170 + GC_rich Low_complexity Low_complexity 1 39 0 7 900 22 88 0 0 chr3 41369703 41369760 -118230023 + GC_rich Low_complexity Low_complexity 1 57 0 7 900 267 236 13 65 chr3 41371328 41371405 -118228378 + ID4_ SINE ID 8 80 -3 7 900 228 241 33 54 chr3 41371405 41371420 -118228363 + ID_B1 SINE B4 8 97 -127 7 900 229 311 106 75 chr3 41372761 41373081 -118226702 - RLTR12B LTR ERVK -29 499 170 7 900 334 273 0 0 chr3 41373853 41373930 -118225853 - ID2 SINE ID -4 79 3 7 900 796 278 3 4 chr3 41374992 41375172 -118224611 + ID_B1 SINE B4 19 193 -31 7 900 263 294 0 0 chr3 41376670 41376738 -118223045 + (TG)n Simple_repeat Simple_repeat 2 69 0 7 900 342 224 114 34 chr3 41377322 41377410 -118222373 - B1F1 SINE Alu -17 132 38 7 900 337 242 116 0 chr3 41379787 41379882 -118219901 + B3 SINE B2 6 111 -105 7 900 491 273 62 38 chr3 41380269 41380429 -118219354 - RSINE1 SINE B4 0 165 2 7 900 301 240 118 20 chr3 41380440 41380542 -118219241 - PB1D9 SINE Alu -8 112 1 7 900 342 292 82 37 chr3 41380931 41381066 -118218717 - MLT1A1 LTR MaLR 0 408 268 7 900 1143 173 76 0 chr3 41381340 41381537 -118218246 + B3 SINE B2 1 212 -4 7 900 602 239 128 41 chr3 41383000 41383196 -118216587 - B4A SINE B4 -77 215 3 7 900 351 0 0 0 chr3 41383406 41383445 -118216338 + (TG)n Simple_repeat Simple_repeat 1 39 0 7 900 229 289 142 17 chr3 41383525 41383701 -118216082 - B3A SINE B2 0 198 1 7 900 254 154 0 0 chr3 41383903 41383942 -118215841 - MER34A1 LTR ERV1 -523 64 26 7 900 412 276 89 67 chr3 41385656 41385835 -118213948 + Tigger15a DNA TcMar 2 184 -531 7 900 323 294 65 0 chr3 41386566 41386658 -118213125 - Tigger15a DNA TcMar -602 113 16 7 900 381 270 92 34 chr3 41386871 41386990 -118212793 + RSINE1 SINE B4 11 136 -29 7 900 552 126 0 0 chr3 41386994 41387081 -118212702 + (CA)n Simple_repeat Simple_repeat 2 88 0 7 900 270 0 0 0 chr3 41388651 41388681 -118211102 + (CCA)n Simple_repeat Simple_repeat 2 31 0 7 900 286 107 0 18 chr3 41388729 41388786 -118210997 - B2_Mm2 SINE B2 -1 194 139 7 900 322 106 0 42 chr3 41388777 41388844 -118210939 - B2_Mm2 SINE B2 -107 109 48 7 900 1222 119 11 0 chr3 41388888 41389064 -118210719 - B2_Mm1t SINE B2 -14 179 2 8 900 302 245 216 0 chr3 41389251 41389353 -118210430 - ID_B1 SINE B4 -2 222 99 8 900 264 330 9 18 chr3 41389573 41389687 -118210096 - PB1D10 SINE Alu -4 113 1 8 900 252 230 126 29 chr3 41390296 41390399 -118209384 - L1MA10 LINE L1 -25 6309 6197 8 900 254 260 25 73 chr3 41390502 41390691 -118209092 - L1MD LINE L1 -290 5888 5716 8 900 286 232 8 59 chr3 41390690 41390809 -118208974 - Lx9 LINE L1 0 7644 7532 8 900 326 269 21 21 chr3 41392599 41392694 -118207089 - B4A SINE B4 -6 286 192 8 900 329 279 13 0 chr3 41392713 41392792 -118206991 - B4A SINE B4 -190 102 23 8 900 180 0 0 0 chr3 41397248 41397268 -118202515 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 8 900 1035 77 14 0 chr3 41397268 41397411 -118202372 - B1_Mus1 SINE Alu -3 145 1 8 900 240 170 0 111 chr3 41399053 41399251 -118200532 + (CAGTG)n Simple_repeat Simple_repeat 4 179 0 8 900 690 250 6 0 chr3 41399266 41399426 -118200357 - B3A SINE B2 -36 162 2 8 900 567 243 59 32 chr3 41399766 41399953 -118199830 - B3A SINE B2 -6 192 1 8 900 243 299 181 0 chr3 41401057 41401278 -118198505 - MLT1C LTR MaLR -153 314 54 8 900 613 187 121 42 chr3 41401391 41401581 -118198202 - B3 SINE B2 -3 213 9 8 900 189 74 0 0 chr3 41401744 41401771 -118198012 + (TCTG)n Simple_repeat Simple_repeat 4 30 0 8 900 444 238 49 0 chr3 41401784 41401906 -118197877 - B3A SINE B2 -63 135 8 8 900 412 248 18 9 chr3 41402100 41402214 -118197569 - B1_Mm SINE Alu -30 117 3 8 900 713 250 45 10 chr3 41403723 41403921 -118195862 + B3 SINE B2 1 205 -11 8 900 1390 65 21 21 chr3 41404877 41405067 -118194716 - B2_Mm2 SINE B2 -5 190 1 8 900 203 32 0 61 chr3 41406072 41406105 -118193678 + (TTTG)n Simple_repeat Simple_repeat 3 33 0 8 900 189 107 0 0 chr3 41406295 41406323 -118193460 + (TCCCC)n Simple_repeat Simple_repeat 3 30 0 8 900 718 154 23 0 chr3 41406338 41406468 -118193315 - B1_Mur4 SINE Alu 0 150 18 8 900 495 271 57 0 chr3 41415287 41415427 -118184356 + B1F SINE Alu 2 149 0 8 900 999 149 77 67 chr3 41416203 41416411 -118183372 + B3 SINE B2 3 212 -4 8 901 207 157 0 0 chr3 41420013 41420064 -118179719 + A-rich Low_complexity Low_complexity 1 51 0 8 901 184 270 108 0 chr3 41421041 41421115 -118178668 + MIRb SINE MIR 57 138 -130 8 901 300 239 42 0 chr3 41421244 41421315 -118178468 + ID4 SINE ID 9 82 -1 8 901 190 191 71 0 chr3 41422734 41422776 -118177007 - MIRc SINE MIR -104 164 120 8 901 1307 173 19 42 chr3 41424443 41424708 -118175075 + MTC LTR MaLR 2 260 -161 8 901 245 315 64 61 chr3 41425339 41425779 -118174004 + L1M2 LINE L1 1637 2077 -4772 8 901 537 279 229 10 chr3 41425819 41426116 -118173667 + ORR1D2 LTR MaLR 1 362 -8 8 901 234 0 0 0 chr3 41426588 41426614 -118173169 + (CA)n Simple_repeat Simple_repeat 1 26 0 8 901 232 291 12 71 chr3 41427245 41427259 -118172524 - ID4_ SINE ID -2 81 7 8 901 237 318 15 0 chr3 41427259 41427325 -118172458 - tRNA-Ala-GCY_ tRNA tRNA -8 67 1 8 901 1283 68 0 0 chr3 41427370 41427532 -118172251 + Lx3A LINE L1 6243 6404 -577 8 901 3125 69 32 81 chr3 41427547 41428017 -118171766 + Lx3A LINE L1 6522 6968 -13 8 901 1348 65 16 21 chr3 41428017 41428205 -118171578 + B2_Mm2 SINE B2 2 188 -7 8 901 21 36 0 0 chr3 41428214 41428242 -118171541 + AT_rich Low_complexity Low_complexity 1 28 0 8 901 942 232 24 5 chr3 41428456 41428668 -118171115 - B3 SINE B2 0 216 1 8 901 301 306 93 36 chr3 41428739 41428878 -118170905 - B1F SINE Alu -2 147 1 8 901 422 228 98 48 chr3 41428961 41429152 -118170631 - B3A SINE B2 -1 194 15 8 901 186 244 111 0 chr3 41430005 41430050 -118169733 - L2b LINE L2 -218 3157 3108 8 901 348 321 18 9 chr3 41431683 41431793 -118167990 - PB1D10 SINE Alu -6 111 1 8 901 620 206 54 54 chr3 41432055 41432204 -118167579 + B1_Mur2 SINE Alu 1 149 0 8 901 486 49 0 35 chr3 41432206 41432291 -118167492 + (CAA)n Simple_repeat Simple_repeat 1 82 0 8 901 1293 83 0 0 chr3 41432420 41432600 -118167183 + (TCCA)n Simple_repeat Simple_repeat 1 180 0 8 901 768 77 0 0 chr3 41432679 41432783 -118167000 + (CA)n Simple_repeat Simple_repeat 2 105 0 8 901 1117 182 55 14 chr3 41433752 41433969 -118165814 + URR1A DNA MER1_type 1 226 0 8 901 22 56 0 0 chr3 41434493 41434529 -118165254 + AT_rich Low_complexity Low_complexity 1 36 0 8 901 1510 171 150 18 chr3 41435871 41436198 -118163585 + ORR1D1 LTR MaLR 1 370 -4 8 901 687 231 13 26 chr3 41436353 41436504 -118163279 + B1_Mur1 SINE Alu 1 149 0 8 901 249 193 0 0 chr3 41436520 41436577 -118163206 + (CAAA)n Simple_repeat Simple_repeat 2 58 0 8 901 780 251 44 15 chr3 41436586 41436792 -118162991 + B3 SINE B2 2 213 -3 8 901 414 0 0 0 chr3 41436973 41437019 -118162764 + (TA)n Simple_repeat Simple_repeat 1 46 0 8 901 21 0 0 0 chr3 41437040 41437061 -118162722 + AT_rich Low_complexity Low_complexity 1 21 0 8 901 375 283 30 0 chr3 41437192 41437291 -118162492 + PB1D7 SINE Alu 18 119 -1 8 901 240 111 0 0 chr3 41437449 41437485 -118162298 + (TCC)n Simple_repeat Simple_repeat 1 36 0 8 901 519 252 28 0 chr3 41437487 41437594 -118162189 - B1_Mur1 SINE Alu -38 111 2 8 901 239 310 0 66 chr3 41437530 41437606 -118162177 - B4 SINE B4 -142 150 80 8 901 2135 193 38 82 chr3 41437694 41438219 -118161564 - RLTR18B LTR ERVK -4 508 7 8 901 337 215 21 0 chr3 41439382 41439475 -118160308 + GA-rich Low_complexity Low_complexity 2 96 0 8 901 1083 83 7 0 chr3 41439630 41439775 -118160008 - B1_Mus2 SINE Alu 0 147 2 8 901 412 18 35 0 chr3 41440408 41440465 -118159318 + (CA)n Simple_repeat Simple_repeat 2 60 0 8 901 515 251 186 0 chr3 41440585 41440752 -118159031 - B3A SINE B2 0 198 1 8 901 2529 237 119 35 chr3 41441167 41441805 -118157978 + Lx6 LINE L1 6742 7433 -27 8 901 259 265 50 10 chr3 41442550 41442649 -118157134 - B1F SINE Alu -13 136 34 8 901 332 277 149 16 chr3 41442649 41442770 -118157013 + B3A SINE B2 58 194 -4 8 901 629 269 19 17 chr3 41444047 41444228 -118155555 + B3 SINE B2 30 215 -1 8 901 207 0 0 0 chr3 41444337 41444360 -118155423 + (TTTTC)n Simple_repeat Simple_repeat 2 24 0 8 901 617 193 18 0 chr3 41444360 41444469 -118155314 - PB1D9 SINE Alu -9 111 1 8 901 443 332 34 89 chr3 41444591 41444826 -118154957 + B4A SINE B4 70 291 -1 8 901 243 0 0 0 chr3 41444841 41444868 -118154915 + (CA)n Simple_repeat Simple_repeat 1 27 0 8 901 315 71 0 0 chr3 41445425 41445467 -118154316 + (CA)n Simple_repeat Simple_repeat 2 43 0 8 901 1918 131 65 12 chr3 41445497 41445838 -118153945 + RLTR15 LTR ERVK 1 359 0 8 901 234 196 39 0 chr3 41446256 41446307 -118153476 + RSINE1 SINE B4 31 83 -82 8 901 225 0 0 0 chr3 41446334 41446359 -118153424 + (CAAT)n Simple_repeat Simple_repeat 4 28 0 8 901 442 284 135 41 chr3 41447010 41447469 -118152314 - L1MA4 LINE L1 -257 6043 5542 8 901 2211 204 89 17 chr3 41447533 41448058 -118151725 + RLTR20B1 LTR ERVK 1 563 0 8 901 979 192 111 19 chr3 41448354 41448561 -118151222 + URR1A DNA MER1_type 1 226 0 8 901 323 193 12 0 chr3 41448712 41448795 -118150988 + (TA)n Simple_repeat Simple_repeat 2 85 0 8 901 306 0 0 0 chr3 41448795 41448829 -118150954 + (CA)n Simple_repeat Simple_repeat 2 35 0 8 901 1370 162 26 0 chr3 41448829 41449094 -118150689 - Lx LINE L1 -36 6618 6347 8 901 2640 133 39 16 chr3 41449144 41449633 -118150150 + L1_Mur2 LINE L1 206 705 -6007 8 901 2661 60 39 16 chr3 41449634 41450022 -118149761 + Lx3_Mus LINE L1 6543 6939 -70 8 901 376 269 9 69 chr3 41450347 41450463 -118149320 - RSINE1 SINE B4 -54 111 3 8 901 317 214 42 28 chr3 41450466 41450538 -118149245 - MER58C DNA MER1_type -11 204 132 8 901 689 256 149 58 chr3 41450639 41450900 -118148883 - B4A SINE B4 -7 285 1 8 901 486 239 43 60 chr3 41451088 41451204 -118148579 - B4 SINE B4 -173 119 6 8 901 513 0 0 0 chr3 41451953 41452010 -118147773 + (GA)n Simple_repeat Simple_repeat 1 57 0 8 901 220 64 62 21 chr3 41452038 41452070 -118147713 + (TAAAA)n Simple_repeat Simple_repeat 1 35 0 8 901 1647 26 0 20 chr3 41452070 41452267 -118147516 + B2_Mm1a SINE B2 1 193 0 8 901 220 64 62 21 chr3 41452267 41452282 -118147501 + (TAAAA)n Simple_repeat Simple_repeat 1 14 0 8 901 272 324 59 0 chr3 41452449 41452551 -118147232 + MER105 DNA DNA 1 108 -96 8 901 245 51 26 0 chr3 41454106 41454145 -118145638 + (TTTTTG)n Simple_repeat Simple_repeat 4 43 0 8 901 1027 54 0 0 chr3 41454145 41454274 -118145509 - B1_Mm SINE Alu 0 147 19 8 901 882 146 219 11 chr3 41454511 41454698 -118145085 - URR1A DNA MER1_type 0 226 1 8 901 236 268 55 118 chr3 41454732 41454842 -118144941 - B1F2 SINE Alu 0 149 47 8 901 258 313 150 15 chr3 41454978 41455503 -118144280 - L1ME3A LINE L1 -185 5977 5386 8 901 21 0 0 0 chr3 41455546 41455567 -118144216 + AT_rich Low_complexity Low_complexity 1 21 0 8 901 274 253 38 51 chr3 41455602 41455681 -118144102 - ID4_ SINE ID -3 80 3 8 901 10004 116 23 13 chr3 41455713 41457992 -118141791 + L1VL4 LINE L1 175 2476 -1083 8 901 6918 105 10 2 chr3 41457986 41459471 -118140312 + L1_Mus4 LINE L1 5138 6635 -1 9 901 423 184 38 19 chr3 41459480 41459585 -118140198 + B2_Mm2 SINE B2 55 161 -34 9 901 709 243 103 5 chr3 41459673 41459869 -118139914 - B3A SINE B2 -5 211 4 9 901 406 372 101 20 chr3 41459876 41460172 -118139611 - L1M5 LINE L1 -1127 5019 4700 9 901 284 312 80 8 chr3 41462138 41462377 -118137406 + L1_Rod LINE L1 2422 2677 -3170 9 901 581 287 46 83 chr3 41462403 41462683 -118137100 + L1M2 LINE L1 3851 4100 -1780 9 901 3126 124 45 31 chr3 41462683 41463238 -118136545 - Lx3C LINE L1 -7 6969 6407 9 901 581 287 46 83 chr3 41463238 41463477 -118136306 + L1M2 LINE L1 4101 4351 -1529 9 901 795 215 85 5 chr3 41463494 41463695 -118136088 + Lx3C LINE L1 6753 6969 -7 9 901 1139 282 127 21 chr3 41463717 41464733 -118135050 + L1M2 LINE L1 4392 5563 -317 9 901 279 0 0 0 chr3 41464733 41464764 -118135019 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 9 901 972 295 164 28 chr3 41464764 41465056 -118134727 + L1M2 LINE L1 5564 5870 -10 9 901 233 276 103 0 chr3 41465921 41466007 -118133776 + ID2 SINE ID 2 93 -59 9 901 185 223 93 18 chr3 41466831 41466888 -118132895 + MIRm SINE MIR 204 267 -9 9 901 725 188 176 6 chr3 41467023 41467205 -118132578 - B3 SINE B2 -3 213 1 9 901 807 276 47 14 chr3 41467279 41467492 -118132291 + B4A SINE B4 73 292 0 9 901 228 257 73 98 chr3 41468964 41469046 -118130737 - PB1D10 SINE Alu -3 114 35 9 901 1279 219 115 23 chr3 41469119 41469503 -118130280 + MTD LTR MaLR 1 419 0 9 901 734 70 0 34 chr3 41469666 41469785 -118129998 - L1_Mur2 LINE L1 -2898 2979 2865 9 901 1293 137 55 5 chr3 41469787 41470007 -118129776 + Lx4A LINE L1 6821 7051 -7 9 901 230 279 103 0 chr3 41471270 41471338 -118128445 + B1F SINE Alu 34 108 -41 9 901 189 171 0 0 chr3 41471352 41471387 -118128396 + (CAGAC)n Simple_repeat Simple_repeat 3 37 0 9 901 359 210 161 54 chr3 41471476 41471662 -118128121 - Charlie1a DNA MER1_type 0 1455 1250 9 901 6254 106 54 11 chr3 41471673 41472670 -118127113 - Lx LINE L1 -6 6648 5609 9 901 9302 143 5 18 chr3 41472666 41474376 -118125407 - L1_Mur1 LINE L1 -1639 4247 2559 9 901 3020 179 98 18 chr3 41475932 41476603 -118123180 - RMER1B Other Other -1 1065 341 9 901 443 198 23 0 chr3 41476657 41476743 -118123040 - Lx8 LINE L1 -560 6913 6826 9 901 914 250 18 26 chr3 41476952 41477173 -118122610 + B3 SINE B2 15 212 -4 9 901 303 316 13 0 chr3 41477485 41477564 -118122219 - ID4_ SINE ID -2 81 2 9 901 354 228 107 19 chr3 41477698 41477801 -118121982 - PB1D10 SINE Alu 0 117 6 9 901 2653 133 36 25 chr3 41478332 41478780 -118121003 + Lx2 LINE L1 6535 6987 -10 9 901 719 208 42 37 chr3 41478794 41478984 -118120799 + B2_Mm2 SINE B2 2 192 -3 9 901 218 56 0 27 chr3 41478996 41479033 -118120750 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 9 901 456 315 76 23 chr3 41479711 41479974 -118119809 - Lx8 LINE L1 -1 7472 7196 9 901 1852 271 55 5 chr3 41479976 41480542 -118119241 - Lx5 LINE L1 -93 6957 6478 9 901 1081 255 53 41 chr3 41480579 41480919 -118118864 - Lx8 LINE L1 -323 7150 6807 9 901 279 200 14 41 chr3 41481463 41481536 -118118247 - PB1D10 SINE Alu -8 109 39 9 901 804 265 5 61 chr3 41482082 41482279 -118117504 - B3A SINE B2 -7 191 6 9 901 824 270 65 0 chr3 41482460 41482645 -118117138 + B3 SINE B2 9 205 -11 9 901 23 0 0 0 chr3 41483056 41483079 -118116704 + AT_rich Low_complexity Low_complexity 1 23 0 9 901 808 288 38 15 chr3 41483144 41483405 -118116378 + B4 SINE B4 1 267 -25 9 901 4836 164 82 12 chr3 41483405 41484348 -118115435 - Lx5 LINE L1 -234 6816 5808 9 901 442 82 0 0 chr3 41484350 41484411 -118115372 - B2_Mm2 SINE B2 -134 61 1 9 901 567 0 0 0 chr3 41485022 41485085 -118114698 + (TCTA)n Simple_repeat Simple_repeat 4 66 0 9 901 504 252 107 0 chr3 41485325 41485456 -118114327 - B1_Mur2 SINE Alu 0 149 5 9 901 273 268 34 23 chr3 41486962 41487050 -118112733 - ID_B1 SINE B4 -60 164 76 9 901 2648 89 35 10 chr3 41487332 41487728 -118112055 - Lx LINE L1 -5 6649 6244 9 901 1074 89 0 7 chr3 41487814 41487961 -118111822 - B1_Mus1 SINE Alu 0 148 3 9 901 321 109 0 0 chr3 41488251 41488306 -118111477 + (CAGA)n Simple_repeat Simple_repeat 4 58 0 9 901 296 313 68 17 chr3 41488352 41488469 -118111314 - B4A SINE B4 -100 192 70 9 901 379 267 103 7 chr3 41488546 41488682 -118111101 + B1F SINE Alu 1 149 0 9 901 920 75 105 0 chr3 41488910 41489043 -118110740 + B1_Mus2 SINE Alu 1 147 0 9 901 240 228 0 0 chr3 41489053 41489110 -118110673 + (TA)n Simple_repeat Simple_repeat 2 58 0 9 901 864 316 28 4 chr3 41489552 41489800 -118109983 + MLT1A0 LTR MaLR 54 307 -58 9 901 2657 91 110 7 chr3 41489800 41490253 -118109530 + L1VL2 LINE L1 71 570 -5765 9 901 1256 86 32 5 chr3 41491182 41491338 -118108445 + B2_Mm1t SINE B2 1 156 -37 9 901 315 0 0 0 chr3 41491338 41491373 -118108410 + (TAAA)n Simple_repeat Simple_repeat 3 37 0 9 901 1256 86 32 5 chr3 41491373 41491404 -118108379 + B2_Mm1t SINE B2 157 193 0 9 901 4845 181 35 3 chr3 41491487 41492523 -118107260 + Lx2B LINE L1 5863 7000 0 9 901 4273 62 30 60 chr3 41492739 41493370 -118106413 + L1_Mus3 LINE L1 6027 6638 0 9 901 378 0 0 0 chr3 41493712 41493754 -118106029 + (CA)n Simple_repeat Simple_repeat 2 43 0 9 901 1367 78 76 28 chr3 41493814 41494063 -118105720 - Lx3_Mus LINE L1 -944 6065 5805 9 901 6538 87 4 36 chr3 41494063 41494103 -118105680 + Lx3_Mus LINE L1 6061 6093 -916 9 901 1989 133 117 51 chr3 41494103 41494555 -118105228 + RLTR45 LTR ERVK 1 482 0 9 901 6538 87 4 36 chr3 41494555 41495494 -118104289 + Lx3_Mus LINE L1 6094 7008 -1 9 901 434 138 33 44 chr3 41495494 41495512 -118104271 - Lx3_Mus LINE L1 -78 5799 5784 9 901 571 262 127 0 chr3 41495832 41495958 -118103825 - B1_Mur2 SINE Alu -7 142 1 9 901 441 0 0 0 chr3 41497926 41497975 -118101808 + (CA)n Simple_repeat Simple_repeat 2 50 0 9 901 352 253 121 0 chr3 41497978 41498069 -118101714 - PB1D10 SINE Alu -7 110 9 9 901 233 333 56 0 chr3 41498007 41498079 -118101704 - ID_B1 SINE B4 -70 154 79 9 901 21 0 0 0 chr3 41498258 41498279 -118101504 + AT_rich Low_complexity Low_complexity 1 21 0 9 901 5698 132 12 17 chr3 41498597 41499645 -118100138 + MusHAL1 LINE L1 655 1697 -1015 9 901 1918 144 45 14 chr3 41499646 41499999 -118099784 + RLTR9D LTR ERVK 1 364 -39 9 901 225 100 0 0 chr3 41500000 41500030 -118099753 + RLTR9B2 LTR ERVK 391 420 0 1 901 16930 137 27 7 chr3 41500030 41504066 -118095717 + Lx2A LINE L1 2891 7008 0 2 901 2225 83 9 69 chr3 41504472 41504820 -118094963 + ORR1A2 LTR MaLR 1 327 0 3 901 28 0 0 0 chr3 41504825 41504853 -118094930 + AT_rich Low_complexity Low_complexity 1 28 0 4 901 460 309 79 0 chr3 41505204 41505369 -118094414 - B4A SINE B4 -114 178 1 5 901 348 247 59 65 chr3 41505616 41505785 -118093998 + L1M2 LINE L1 2520 2687 -3456 6 901 871 296 57 24 chr3 41505784 41506279 -118093504 + L1M2 LINE L1 2876 3386 -2757 6 901 26 74 0 0 chr3 41506298 41506352 -118093431 + AT_rich Low_complexity Low_complexity 1 54 0 7 901 323 243 0 0 chr3 41506352 41506422 -118093361 + ID4 SINE ID 2 71 -12 8 901 1538 226 73 13 chr3 41506532 41506543 -118093240 + MTD LTR MaLR 1 11 -408 9 901 180 0 0 0 chr3 41506543 41506563 -118093220 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 1 901 1538 226 73 13 chr3 41506563 41506932 -118092851 + MTD LTR MaLR 12 403 -16 9 901 237 288 0 15 chr3 41506953 41507020 -118092763 + LTR16C LTR ERVL 360 425 -64 1 901 216 0 0 0 chr3 41507261 41507285 -118092498 + (TAA)n Simple_repeat Simple_repeat 1 24 0 1 901 411 298 33 8 chr3 41507788 41507910 -118091873 - RSINE1 SINE B4 -38 127 3 1 901 1115 68 7 0 chr3 41507955 41508101 -118091682 - B1_Mus1 SINE Alu 0 148 2 1 901 410 250 14 176 chr3 41508370 41508666 -118091117 - Lx9 LINE L1 -47 7597 7350 1 901 1933 228 52 10 chr3 41508718 41509202 -118090581 - RMER20A LTR ERVK -2 514 11 1 901 293 326 97 22 chr3 41509244 41509470 -118090313 - L1_Rod LINE L1 -3262 2585 2343 1 901 693 316 47 32 chr3 41509635 41510099 -118089684 - L1_Mur1 LINE L1 -3922 1958 1488 1 901 1582 271 96 5 chr3 41510324 41510710 -118089073 - Lx5 LINE L1 -3 7047 6627 1 901 240 35 0 0 chr3 41510823 41510852 -118088931 + (TCCA)n Simple_repeat Simple_repeat 2 30 0 2 901 231 103 0 0 chr3 41510915 41510954 -118088829 + (T)n Simple_repeat Simple_repeat 1 39 0 2 901 540 352 15 41 chr3 41511256 41511523 -118088260 - L1M3d LINE L1 -5384 507 248 2 901 370 94 0 30 chr3 41511836 41511902 -118087881 + (TTTTC)n Simple_repeat Simple_repeat 1 64 0 2 901 501 17 0 0 chr3 41511912 41511970 -118087813 + (TC)n Simple_repeat Simple_repeat 2 59 0 2 901 317 210 117 99 chr3 41511970 41512070 -118087713 - PB1D9 SINE Alu -9 111 8 2 901 421 237 78 17 chr3 41512411 41512527 -118087256 + B1F SINE Alu 27 149 0 2 901 222 37 0 0 chr3 41512883 41512910 -118086873 + (CA)n Simple_repeat Simple_repeat 2 28 0 2 901 22 0 0 0 chr3 41513594 41513616 -118086167 + AT_rich Low_complexity Low_complexity 1 22 0 2 901 230 208 27 14 chr3 41515663 41515736 -118084047 - L1ME4a LINE L1 -5 6119 6046 2 901 352 313 153 6 chr3 41515995 41516178 -118083605 + Charlie1 DNA MER1_type 11 220 -2561 3 901 978 248 95 40 chr3 41516411 41516738 -118083045 + ORR1D2 LTR MaLR 5 349 -21 3 901 870 215 89 0 chr3 41517291 41517482 -118082301 - B3 SINE B2 -6 210 3 3 901 1219 20 0 33 chr3 41517561 41517713 -118082070 - B1_Mm SINE Alu 0 147 1 3 901 362 256 199 0 chr3 41517735 41517891 -118081892 + MER5A DNA MER1_type 2 188 -1 3 901 543 339 22 6 chr3 41518082 41518260 -118081523 - B3A SINE B2 -16 182 2 3 901 570 239 0 8 chr3 41518383 41518501 -118081282 - B1_Mur1 SINE Alu -32 117 1 3 901 231 341 164 6 chr3 41518797 41518980 -118080803 - MIR SINE MIR -13 249 38 3 901 213 175 0 0 chr3 41519081 41519121 -118080662 + MIRm SINE MIR 234 273 -3 3 901 521 279 193 17 chr3 41519157 41519390 -118080393 - MER2 DNA MER2_type 0 345 72 3 901 1758 225 63 40 chr3 41519431 41519907 -118079876 - Lx6 LINE L1 -27 7433 6947 4 901 248 314 105 0 chr3 41519931 41520017 -118079766 - MER2 DNA MER2_type -250 95 1 3 901 21 36 0 0 chr3 41520613 41520641 -118079142 + AT_rich Low_complexity Low_complexity 1 28 0 4 901 21 100 0 0 chr3 41520776 41520846 -118078937 + AT_rich Low_complexity Low_complexity 1 70 0 4 901 1160 43 0 0 chr3 41521081 41521220 -118078563 - B1_Mm SINE Alu -8 139 1 4 901 484 191 77 12 chr3 41521376 41521592 -118078191 + Lx9 LINE L1 7395 7644 0 4 901 318 273 125 7 chr3 41522103 41522247 -118077536 - Tigger2b DNA MER2_type -562 164 4 4 901 384 277 32 39 chr3 41522453 41522607 -118077176 + L1_Rod LINE L1 5529 5681 -166 4 901 853 267 82 84 chr3 41522844 41523212 -118076571 - MTEa LTR MaLR -5 374 8 4 901 299 270 97 60 chr3 41524111 41524245 -118075538 + MLT1A1 LTR MaLR 268 406 -2 4 901 216 0 0 0 chr3 41524257 41524281 -118075502 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 4 901 12977 37 3 1 chr3 41524365 41526683 -118073100 - L1Md_F3 LINE L1 0 6584 4263 5 901 23 0 0 0 chr3 41527038 41527061 -118072722 + AT_rich Low_complexity Low_complexity 1 23 0 5 901 27 0 0 0 chr3 41527125 41527152 -118072631 + AT_rich Low_complexity Low_complexity 1 27 0 5 901 647 233 194 72 chr3 41527152 41527299 -118072484 + MTD LTR MaLR 15 196 -223 5 901 3912 128 24 6 chr3 41527299 41527921 -118071862 + Lx2B LINE L1 6367 6999 -1 5 901 647 233 194 72 chr3 41527921 41527995 -118071788 + MTD LTR MaLR 197 263 -156 5 901 927 128 0 0 chr3 41528326 41528459 -118071324 - B1_Mur4 SINE Alu -7 143 11 5 901 1554 135 88 3 chr3 41528827 41529110 -118070673 + Lx LINE L1 6348 6654 0 5 901 232 283 51 22 chr3 41529182 41529385 -118070398 + L1M5 LINE L1 5377 5585 -577 5 901 3074 274 81 22 chr3 41529743 41530767 -118069016 + Lx9 LINE L1 6387 7470 -174 5 901 299 319 78 49 chr3 41530813 41530955 -118068828 - MIRb SINE MIR -109 159 14 5 901 24 0 0 0 chr3 41531274 41531298 -118068485 + AT_rich Low_complexity Low_complexity 1 24 0 6 901 813 169 0 22 chr3 41531379 41531518 -118068265 + B1_Mur3 SINE Alu 1 136 -13 6 901 702 221 0 0 chr3 41532633 41532773 -118067010 - B1_Mur2 SINE Alu -3 146 7 6 901 925 94 0 0 chr3 41533348 41533476 -118066307 + L1_Mur2 LINE L1 5295 5422 -455 6 901 323 296 185 39 chr3 41534968 41535249 -118064534 + L1M5 LINE L1 3915 4236 -1910 6 901 317 261 99 50 chr3 41535592 41535713 -118064070 - L1MD1 LINE L1 -8 6234 6108 6 901 297 262 112 0 chr3 41535714 41535794 -118063989 - Tigger5 DNA MER2_type 0 2406 2318 6 901 497 306 201 37 chr3 41535776 41535990 -118063793 - Tigger5 DNA MER2_type -2157 249 1 6 901 427 253 32 0 chr3 41536214 41536309 -118063474 - PB1D7 SINE Alu -21 99 2 6 901 396 253 39 9 chr3 41536407 41536539 -118063244 - L1MD1 LINE L1 -598 5644 5506 6 901 488 114 0 0 chr3 41536645 41536715 -118063068 + L1_Mus2 LINE L1 4911 4980 -903 6 901 7236 65 35 0 chr3 41536718 41537841 -118061942 + L1_Mus2 LINE L1 5413 6566 0 6 901 1113 92 0 0 chr3 41538351 41538493 -118061290 + B1_Mus1 SINE Alu 2 143 -5 6 901 183 42 0 0 chr3 41538495 41538519 -118061264 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 7 901 457 244 104 0 chr3 41538705 41538820 -118060963 - B1F SINE Alu -1 148 22 7 901 301 329 77 106 chr3 41539012 41539182 -118060601 + RSINE1 SINE B4 1 165 0 7 901 444 255 244 18 chr3 41539198 41539362 -118060421 + B3 SINE B2 3 203 -13 7 901 187 31 62 0 chr3 41539488 41539520 -118060263 + (CAAAA)n Simple_repeat Simple_repeat 3 36 0 7 901 1184 97 37 21 chr3 41539982 41540172 -118059611 + B2_Mm2 SINE B2 1 193 -2 7 901 375 297 167 25 chr3 41540407 41541088 -118058695 + L1M5 LINE L1 4010 4787 -1359 7 901 401 365 107 12 chr3 41541226 41541470 -118058313 - ORR1E LTR MaLR -89 270 4 7 901 233 77 0 49 chr3 41541649 41541690 -118058093 + (TTTC)n Simple_repeat Simple_repeat 2 40 0 7 901 1077 43 0 14 chr3 41541690 41541831 -118057952 - B1_Mm SINE Alu 0 147 9 7 901 548 302 87 61 chr3 41541846 41541992 -118057791 + L1M5 LINE L1 4969 5120 -1026 7 901 1250 153 282 10 chr3 41541992 41542283 -118057500 + ORR1D1 LTR MaLR 3 372 -2 8 901 548 302 87 61 chr3 41542283 41542481 -118057302 + L1M5 LINE L1 5121 5322 -824 7 901 1057 43 0 7 chr3 41542525 41542665 -118057118 - B1_Mus1 SINE Alu -1 147 9 8 901 804 310 5 14 chr3 41542778 41542997 -118056786 + B4 SINE B4 4 220 -72 8 901 264 166 37 22 chr3 41542997 41543139 -118056644 + GA-rich Low_complexity Low_complexity 1 144 0 8 901 280 159 0 0 chr3 41543239 41543283 -118056500 + L1M5 LINE L1 5510 5553 -620 7 901 530 234 71 21 chr3 41544076 41544216 -118055567 + B1_Mur3 SINE Alu 2 148 -1 8 901 205 241 51 17 chr3 41544856 41544915 -118054868 - MIR SINE MIR -142 120 60 8 901 30 0 0 0 chr3 41546623 41546653 -118053130 + AT_rich Low_complexity Low_complexity 1 30 0 8 901 388 246 144 130 chr3 41547230 41547445 -118052338 + B4A SINE B4 10 227 -65 8 901 192 354 0 0 chr3 41548274 41548339 -118051444 - MIR SINE MIR -193 69 5 8 901 249 212 15 0 chr3 41549758 41549824 -118049959 + Lx9 LINE L1 7422 7488 -156 8 902 294 125 0 0 chr3 41550024 41550072 -118049711 + (TA)n Simple_repeat Simple_repeat 1 48 0 9 902 445 186 52 0 chr3 41550072 41550169 -118049614 - RCHARR1 DNA MER1_type -156 818 717 9 902 22 35 0 0 chr3 41551677 41551706 -118048077 + AT_rich Low_complexity Low_complexity 1 29 0 9 902 490 254 31 0 chr3 41551723 41551853 -118047930 - RSINE1 SINE B4 -30 135 2 9 902 222 150 0 0 chr3 41552839 41552879 -118046904 + (TATATG)n Simple_repeat Simple_repeat 2 41 0 9 902 1074 251 69 87 chr3 41553036 41553271 -118046512 + Lx7 LINE L1 7157 7413 -283 9 902 6476 147 48 17 chr3 41553271 41554393 -118045390 - Lx4B LINE L1 -7 7051 5895 9 902 381 93 0 0 chr3 41554396 41554450 -118045333 + (TTCA)n Simple_repeat Simple_repeat 3 56 0 9 902 1074 251 69 87 chr3 41554450 41554760 -118045023 + Lx7 LINE L1 7414 7696 0 9 902 275 246 0 32 chr3 41554995 41555058 -118044725 - PB1D9 SINE Alu -1 119 59 9 902 476 170 36 36 chr3 41555441 41555551 -118044232 - PB1D9 SINE Alu 0 120 11 9 902 826 184 132 0 chr3 41555580 41555770 -118044013 - Lx2 LINE L1 -1 6996 6782 1 902 404 71 0 0 chr3 41555770 41555826 -118043957 + Lx2 LINE L1 6170 6225 -772 1 902 716 269 25 0 chr3 41556144 41556304 -118043479 - RSINE1 SINE B4 0 165 2 1 902 21 0 0 0 chr3 41556421 41556442 -118043341 + AT_rich Low_complexity Low_complexity 1 21 0 1 902 234 0 0 0 chr3 41558172 41558198 -118041585 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1 902 807 319 83 45 chr3 41558225 41558599 -118041184 - LTR87 LTR ERVL? -69 555 168 1 902 748 272 34 118 chr3 41559399 41559695 -118040088 - B4 SINE B4 0 292 22 1 902 346 289 72 6 chr3 41560466 41560633 -118039150 + L1MA5 LINE L1 2546 2723 -3420 1 902 1274 300 70 32 chr3 41560688 41560863 -118038920 + L1MA5 LINE L1 4249 4425 -1718 1 902 998 302 39 3 chr3 41560863 41561225 -118038558 - MTEb LTR MaLR -4 375 1 1 902 1274 291 167 33 chr3 41561225 41562648 -118037135 + L1MA5 LINE L1 4426 6029 -127 1 902 703 274 5 87 chr3 41563049 41563245 -118036538 - B3A SINE B2 -18 180 1 1 902 6959 53 1 7 chr3 41563763 41564697 -118035086 - L1Md_F2 LINE L1 0 6582 5675 1 902 285 304 0 12 chr3 41564894 41564974 -118034809 + ID4_ SINE ID 5 83 0 1 902 195 184 0 0 chr3 41565241 41565279 -118034504 + (CATATA)n Simple_repeat Simple_repeat 2 39 0 1 902 321 218 48 60 chr3 41565491 41565574 -118034209 + RSINE1 SINE B4 3 84 -81 1 902 779 297 71 10 chr3 41565590 41565787 -118033996 + B3A SINE B2 2 210 -6 1 902 356 141 93 53 chr3 41565801 41565876 -118033907 - ORR1C2 LTR MaLR -306 78 1 1 902 961 313 112 39 chr3 41565974 41566410 -118033373 - MER70A LTR ERVL -4 468 1 1 902 280 270 122 160 chr3 41566554 41566841 -118032942 - MTEb LTR MaLR -7 372 84 1 902 326 298 12 0 chr3 41566925 41567009 -118032774 + L1ME3 LINE L1 5811 5895 -267 1 902 409 292 0 0 chr3 41567312 41567425 -118032358 - Lx9 LINE L1 -453 7191 7079 1 902 36978 46 8 0 chr3 41567774 41574293 -118025490 - L1Md_T LINE L1 0 6585 101 1 902 3761 5 0 0 chr3 41575199 41575615 -118024168 - L1Md_A LINE L1 0 6582 6167 1 902 337 295 73 92 chr3 41575759 41575923 -118023860 - B4A SINE B4 -124 168 8 1 902 694 300 97 15 chr3 41575928 41576195 -118023588 - LTR80B LTR ERVL -266 318 30 1 902 651 339 127 45 chr3 41576339 41576939 -118022844 + L2 LINE L2 2149 2797 -622 1 902 535 291 60 0 chr3 41576980 41577114 -118022669 - B1F2 SINE Alu -2 147 6 1 902 38 0 0 0 chr3 41577230 41577268 -118022515 + AT_rich Low_complexity Low_complexity 1 38 0 1 902 1130 49 7 0 chr3 41577268 41577410 -118022373 - B1_Mus1 SINE Alu 0 148 6 1 902 345 309 69 29 chr3 41577592 41577765 -118022018 - L1MD2 LINE L1 -529 5830 5651 1 902 435 19 0 0 chr3 41577997 41578049 -118021734 + (CA)n Simple_repeat Simple_repeat 2 53 0 1 902 28 48 0 0 chr3 41578512 41578554 -118021229 + AT_rich Low_complexity Low_complexity 1 42 0 1 902 3350 202 41 64 chr3 41579600 41580098 -118019685 - RMER1C Other Other 0 1342 873 1 902 3116 31 31 3 chr3 41580098 41580483 -118019300 + MTA_Mm LTR MaLR 1 396 0 1 902 3350 202 41 64 chr3 41580483 41580858 -118018925 - RMER1C Other Other -470 872 489 1 902 189 147 0 0 chr3 41581337 41581371 -118018412 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 1 902 30350 80 15 9 chr3 41581499 41586660 -118013123 - L1Md_F2 LINE L1 -2 6580 1388 1 902 255 149 0 0 chr3 41586839 41586886 -118012897 + RLTR19-int LTR ERVK 142 188 -5218 1 902 281 213 52 26 chr3 41586879 41586956 -118012827 + RLTR19-int LTR ERVK 741 819 -4587 1 902 634 182 25 0 chr3 41586960 41587081 -118012702 + RLTR19-int LTR ERVK 938 1061 -5076 1 902 18336 124 26 13 chr3 41587093 41590299 -118009484 + ETnERV2-int LTR ERVK 2555 5781 -1625 1 902 4743 83 5 5 chr3 41590299 41591329 -118008454 + L1Md_F2 LINE L1 591 1625 -4258 1 902 8480 66 3 0 chr3 41591321 41592465 -118007318 + L1Md_F2 LINE L1 4439 5586 -297 1 902 7879 55 4 3 chr3 41592465 41593460 -118006323 + L1Md_F2 LINE L1 5587 6582 0 1 902 9103 74 1 0 chr3 41593460 41594747 -118005036 + L1Md_F2 LINE L1 1605 2892 -2991 1 902 30712 79 6 22 chr3 41594750 41599914 -117999869 + L1Md_F2 LINE L1 511 5586 -297 1 902 7819 60 1 4 chr3 41599914 41600913 -117998870 + L1Md_F2 LINE L1 5587 6582 0 1 902 17735 86 1 50 chr3 41600916 41603283 -117996500 + L1Md_F2 LINE L1 2892 5159 -724 1 902 8326 40 0 0 chr3 41603283 41604278 -117995505 + L1Md_T LINE L1 5587 6581 -1 1 902 17735 86 1 50 chr3 41604278 41604742 -117995041 + L1Md_F2 LINE L1 5160 5584 -299 1 902 6851 87 23 9 chr3 41604745 41605715 -117994068 + L1Md_F2 LINE L1 5588 6570 -12 1 902 828 123 6 6 chr3 41605719 41605882 -117993901 + MusHAL1 LINE L1 354 516 -2196 1 902 213 39 0 0 chr3 41605882 41605908 -117993875 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 1 902 3340 62 7 15 chr3 41605923 41606381 -117993402 + ETnERV2-int LTR ERVK 5772 6225 -1181 1 902 1060 127 46 0 chr3 41606431 41606604 -117993179 + ETnERV2-int LTR ERVK 6222 6402 -1004 1 902 383 104 0 43 chr3 41606854 41606924 -117992859 + ETnERV2-int LTR ERVK 7337 7403 -3 1 902 2269 138 14 77 chr3 41606926 41607357 -117992426 + RLTR9E LTR ERVK 1 404 -5 1 902 24555 103 8 5 chr3 41607357 41611933 -117987850 + L1_Mus1 LINE L1 1982 6567 0 1 902 225 178 0 0 chr3 41612090 41612135 -117987648 + T-rich Low_complexity Low_complexity 4 48 0 1 902 210 71 0 0 chr3 41612215 41612243 -117987540 + (A)n Simple_repeat Simple_repeat 1 28 0 1 902 9838 170 46 15 chr3 41612244 41615319 -117984464 + Lx5 LINE L1 3806 6998 -52 1 902 23 0 0 0 chr3 41615330 41615353 -117984430 + AT_rich Low_complexity Low_complexity 1 23 0 1 902 186 148 18 36 chr3 41615355 41615411 -117984372 + GA-rich Low_complexity Low_complexity 1 55 0 1 902 314 293 0 0 chr3 41616793 41616868 -117982915 - ID4_ SINE ID 0 83 9 1 902 25 31 0 0 chr3 41617035 41617067 -117982716 + AT_rich Low_complexity Low_complexity 1 32 0 1 902 21 36 0 0 chr3 41617117 41617145 -117982638 + AT_rich Low_complexity Low_complexity 1 28 0 1 902 598 246 48 34 chr3 41618739 41618886 -117980897 + RSINE1 SINE B4 17 165 0 1 902 525 131 0 0 chr3 41618888 41618972 -117980811 + (CA)n Simple_repeat Simple_repeat 1 84 0 1 902 617 289 104 14 chr3 41621672 41621882 -117977901 + B4 SINE B4 2 231 -61 1 902 743 312 119 16 chr3 41621882 41622126 -117977657 + B4A SINE B4 1 269 -23 1 902 502 15 30 0 chr3 41622134 41622201 -117977582 + (CA)n Simple_repeat Simple_repeat 1 69 0 1 902 243 288 0 52 chr3 41622210 41622287 -117977496 + B4A SINE B4 218 290 -2 1 902 362 360 71 49 chr3 41622344 41622569 -117977214 + B4A SINE B4 7 236 -56 1 902 31536 97 25 23 chr3 41623813 41630181 -117969602 - L1Md_F2 LINE L1 0 6582 212 1 902 2018 175 60 10 chr3 41630513 41630912 -117968871 - MTC LTR MaLR -2 419 1 1 902 474 65 0 0 chr3 41631361 41631423 -117968360 + (TCC)n Simple_repeat Simple_repeat 3 64 0 1 902 279 191 0 0 chr3 41631483 41631551 -117968232 + CT-rich Low_complexity Low_complexity 2 69 0 1 902 466 231 8 107 chr3 41632335 41632456 -117967327 + B4 SINE B4 159 267 -25 1 902 252 59 0 0 chr3 41632457 41632491 -117967292 + (CA)n Simple_repeat Simple_repeat 2 35 0 1 902 288 361 32 8 chr3 41632864 41632987 -117966796 - L2a LINE L2 0 3426 3301 1 902 216 200 369 0 chr3 41633036 41633101 -117966682 - PB1D10 SINE Alu -6 111 23 1 902 196 346 149 35 chr3 41634044 41634326 -117965457 - L3 LINE CR1 -1 4488 4175 1 902 240 111 0 0 chr3 41634326 41634362 -117965421 + (T)n Simple_repeat Simple_repeat 1 36 0 1 902 1586 301 22 31 chr3 41634582 41635572 -117964211 - Lx5 LINE L1 0 7050 6168 1 902 2350 157 31 59 chr3 41635596 41636170 -117963613 - L1_Mur3 LINE L1 -1997 3883 3326 1 902 225 0 0 0 chr3 41636170 41636195 -117963588 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 1 902 4949 204 63 13 chr3 41636204 41637275 -117962508 - Lx5 LINE L1 -1 7049 5925 1 902 1915 140 16 3 chr3 41637276 41637592 -117962191 - RLTR46 LTR ERVK 0 320 1 1 902 23768 94 8 23 chr3 41637592 41641102 -117958681 - MMERVK10C-int LTR ERVK 0 7581 4125 1 902 7715 81 19 7 chr3 41641101 41642195 -117957588 - MMERVK10C-int LTR ERVK -3662 3919 2813 1 902 3272 86 97 10 chr3 41642217 41642733 -117957050 - MMERVK10C-int LTR ERVK -5136 2445 1885 1 902 348 138 0 0 chr3 41642735 41642793 -117956990 - MMERVK10C-int LTR ERVK -4260 1146 1089 1 902 1377 181 257 26 chr3 41642798 41643303 -117956480 - MMERVK10C-int LTR ERVK -4587 819 198 1 902 297 216 9 64 chr3 41643868 41643977 -117955806 - IAPLTR3-int LTR ERVK -5884 937 835 1 902 1968 139 13 3 chr3 41644089 41644406 -117955377 - RLTR46 LTR ERVK 0 320 1 1 902 1949 184 43 4 chr3 41644434 41644921 -117954862 - L1_Mur3 LINE L1 -2556 3324 2819 1 902 1651 181 38 82 chr3 41644921 41645289 -117954494 - ORR1B1 LTR MaLR 0 394 43 1 902 458 178 152 0 chr3 41645319 41645437 -117954346 - L1_Mur3 LINE L1 -3080 2800 2665 1 902 345 62 0 0 chr3 41645437 41645485 -117954298 + (TA)n Simple_repeat Simple_repeat 2 49 0 1 902 261 0 26 0 chr3 41645485 41645523 -117954260 - L1_Mus3 LINE L1 -23 6615 6577 1 902 6412 98 25 2 chr3 41645538 41646498 -117953285 - L1_Mus4 LINE L1 -5 6631 5650 1 902 1470 118 4 0 chr3 41646497 41646735 -117953048 + L1_Mur2 LINE L1 4337 4575 -1302 1 902 30223 77 11 0 chr3 41646737 41651878 -117947905 + L1Md_F2 LINE L1 389 5585 -298 1 902 7894 51 1 4 chr3 41651881 41652866 -117946917 + L1Md_F2 LINE L1 5587 6568 -14 1 902 5540 167 8 3 chr3 41652873 41653931 -117945852 + L1_Mm LINE L1 4571 5633 -250 1 902 1568 224 31 26 chr3 41653929 41654223 -117945560 - L1_Mur3 LINE L1 -3522 2355 2054 1 902 405 0 0 0 chr3 41654223 41654268 -117945515 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 902 1568 224 31 26 chr3 41654268 41654329 -117945454 - L1_Mur3 LINE L1 -3824 2053 2000 1 902 3450 23 5 0 chr3 41654329 41654723 -117945060 - MTA_Mm LTR MaLR 0 396 1 1 902 9188 31 5 1 chr3 41654723 41655817 -117943966 - MTA_Mm-int LTR MaLR 0 1098 1 1 902 3475 25 2 0 chr3 41655817 41656212 -117943571 - MTA_Mm LTR MaLR 0 396 1 1 902 1568 224 31 26 chr3 41656212 41656308 -117943475 - L1_Mur3 LINE L1 -3878 1999 1902 1 902 643 306 25 5 chr3 41656424 41656624 -117943159 + MER3 DNA MER1_type 3 206 -3 1 902 28 29 0 0 chr3 41656847 41656882 -117942901 + AT_rich Low_complexity Low_complexity 1 35 0 1 902 289 164 27 0 chr3 41656993 41657066 -117942717 + (TA)n Simple_repeat Simple_repeat 1 75 0 1 902 316 357 44 25 chr3 41657576 41657780 -117942003 + MIRb SINE MIR 61 268 0 1 902 1532 63 58 0 chr3 41657991 41658209 -117941574 - Lx7 LINE L1 -2059 5637 5407 1 902 6668 50 0 0 chr3 41658206 41659045 -117940738 + L1_Mus1 LINE L1 5727 6565 -2 1 902 301 258 82 16 chr3 41659789 41659911 -117939872 + Lx5 LINE L1 6919 7048 -2 1 902 515 293 121 0 chr3 41662028 41662168 -117937615 - RSINE1 SINE B4 -8 157 1 1 902 5847 206 52 25 chr3 41662413 41662785 -117936998 - Lx6 LINE L1 -183 7277 6881 1 902 468 0 0 0 chr3 41662785 41662837 -117936946 + (TC)n Simple_repeat Simple_repeat 2 53 0 1 902 279 0 0 0 chr3 41662837 41662867 -117936916 + (TG)n Simple_repeat Simple_repeat 2 32 0 1 902 5847 206 52 25 chr3 41662867 41663845 -117935938 - Lx6 LINE L1 -580 6880 5892 1 902 762 233 0 14 chr3 41664197 41664345 -117935438 - B1_Mur3 SINE Alu -1 148 3 1 902 2973 30 6 0 chr3 41665599 41665961 -117933822 - L1Md_F2 LINE L1 -352 6230 5867 1 902 2551 29 10 6 chr3 41665962 41666274 -117933509 + L1Md_F2 LINE L1 6255 6567 -15 1 902 421 337 121 6 chr3 41666743 41666925 -117932858 - B3 SINE B2 -13 203 1 1 902 297 0 0 0 chr3 41666945 41666978 -117932805 + (TC)n Simple_repeat Simple_repeat 2 34 0 1 902 405 0 0 0 chr3 41666978 41667022 -117932761 + (TA)n Simple_repeat Simple_repeat 2 46 0 1 902 2034 155 87 13 chr3 41667192 41667584 -117932199 - MTC LTR MaLR 0 421 1 2 902 4082 249 58 26 chr3 41667714 41668392 -117931391 + Lx9 LINE L1 5446 6278 -1366 2 902 2175 139 41 56 chr3 41668392 41668782 -117931001 - ORR1C2 LTR MaLR 0 384 1 2 902 4082 217 66 18 chr3 41668782 41668819 -117930964 + Lx9 LINE L1 6279 6335 -1309 2 902 294 29 0 0 chr3 41668819 41668854 -117930929 + (CA)n Simple_repeat Simple_repeat 2 36 0 2 902 4082 217 66 18 chr3 41668854 41669782 -117930001 + Lx9 LINE L1 6336 7288 -356 2 902 843 196 243 7 chr3 41670947 41671121 -117928662 + Lx9 LINE L1 7281 7478 -166 2 902 456 67 0 0 chr3 41671121 41671181 -117928602 + (CA)n Simple_repeat Simple_repeat 2 61 0 2 902 843 196 243 7 chr3 41671181 41671294 -117928489 + Lx9 LINE L1 7479 7636 -8 2 902 1556 146 50 36 chr3 41671299 41671662 -117928121 - Lx2B LINE L1 -641 6359 5992 2 902 618 142 9 0 chr3 41671664 41671770 -117928013 + Lx2B LINE L1 6360 6466 -534 2 902 1800 123 20 102 chr3 41671770 41672123 -117927660 - RLTR23 LTR ERV1 0 430 107 2 902 1028 117 0 6 chr3 41672160 41672324 -117927459 + (TTTC)n Simple_repeat Simple_repeat 1 163 0 2 902 1004 151 6 0 chr3 41672339 41672518 -117927265 + CT-rich Low_complexity Low_complexity 1 180 0 2 902 233 194 319 0 chr3 41672521 41672593 -117927190 - RLTR23 LTR ERV1 -317 113 19 2 902 1897 189 39 41 chr3 41672593 41673035 -117926748 + Lx2B LINE L1 6547 6987 -13 2 902 375 23 0 0 chr3 41673218 41673262 -117926521 + (TC)n Simple_repeat Simple_repeat 1 44 0 2 902 432 0 0 0 chr3 41673262 41673309 -117926474 + (CA)n Simple_repeat Simple_repeat 1 48 0 2 902 227 198 71 47 chr3 41673679 41673764 -117926019 - Lx8 LINE L1 -1 7472 7386 2 902 558 323 118 8 chr3 41673904 41674141 -117925642 - Lx8 LINE L1 -160 7313 7051 2 902 7325 54 3 1 chr3 41674171 41675125 -117924658 - L1Md_F2 LINE L1 -3 6579 5624 2 902 1420 289 30 42 chr3 41675133 41675661 -117924122 - Lx8 LINE L1 -458 7015 6494 2 902 8485 8 0 0 chr3 41675756 41676892 -117922891 - L1Md_A LINE L1 0 6582 5447 2 112 38859 15 6 6 chr3 41676888 41683474 -117916309 - L1Md_A LINE L1 0 6582 1 2 903 1584 228 97 17 chr3 41683870 41684232 -117915551 + MTD LTR MaLR 1 391 -28 2 903 607 117 0 0 chr3 41684251 41684345 -117915438 - RLTR31A_Mm LTR ERVK -298 286 193 2 903 321 26 0 0 chr3 41684354 41684392 -117915391 + (TC)n Simple_repeat Simple_repeat 2 39 0 2 903 601 69 11 0 chr3 41684392 41684479 -117915304 - RLTR31A_Mm LTR ERVK -496 88 1 2 903 251 116 22 44 chr3 41685145 41685190 -117914593 + ORR1A4 LTR MaLR 286 329 0 2 903 1768 215 18 13 chr3 41686081 41686463 -117913320 - RLTR11A2 LTR ERVK 0 527 144 2 903 387 141 0 0 chr3 41686521 41686585 -117913198 + (A)n Simple_repeat Simple_repeat 1 64 0 2 903 34065 68 6 4 chr3 41686877 41692883 -117906900 - L1Md_F3 LINE L1 -1 6583 590 2 903 2895 27 24 0 chr3 41692883 41693221 -117906562 + ORR1A0 LTR MaLR 1 346 0 2 903 13750 55 15 1 chr3 41693221 41694987 -117904796 + ORR1A0-int LTR MaLR 1 1792 0 2 903 2930 21 24 0 chr3 41694987 41695325 -117904458 + ORR1A0 LTR MaLR 1 346 0 2 903 5282 162 24 32 chr3 41695325 41695684 -117904099 - L1Md_F3 LINE L1 -6135 589 216 2 903 4682 98 49 0 chr3 41696643 41697358 -117902425 - Lx LINE L1 -318 6336 5587 2 903 1757 126 46 7 chr3 41697362 41697666 -117902117 + Lx LINE L1 6339 6654 0 2 903 539 287 37 25 chr3 41697981 41698142 -117901641 + RSINE1 SINE B4 3 165 0 2 903 375 289 25 6 chr3 41698142 41698302 -117901481 + (CA)n Simple_repeat Simple_repeat 1 163 0 2 903 593 159 18 6 chr3 41698321 41698485 -117901298 + (CA)n Simple_repeat Simple_repeat 1 166 0 2 903 242 325 0 48 chr3 41698803 41698887 -117900896 - ID4_ SINE ID 0 83 4 2 903 228 67 0 0 chr3 41699227 41699257 -117900526 + (TTCA)n Simple_repeat Simple_repeat 3 32 0 2 903 5756 208 64 12 chr3 41699262 41700550 -117899233 - Lx5 LINE L1 -7 7043 5688 2 903 485 183 12 0 chr3 41700550 41700632 -117899151 - RLTR25A LTR ERVK -1020 83 1 2 903 607 204 7 21 chr3 41700658 41700798 -117898985 - L1_Mur3 LINE L1 -1890 3990 3853 2 903 563 165 12 19 chr3 41701295 41701306 -117898477 - L1Md_F LINE L1 -5446 1278 1267 2 903 2797 70 0 8 chr3 41701306 41701680 -117898103 - L1Md_F2 LINE L1 -1 6581 6211 2 903 4803 106 9 23 chr3 41701680 41702480 -117897303 - L1Md_F LINE L1 -5458 1266 480 2 903 261 140 20 0 chr3 41702480 41702530 -117897253 - L1VL1 LINE L1 -6348 74 24 2 903 1899 155 55 11 chr3 41702527 41702907 -117896876 - L1Md_F LINE L1 -5977 747 217 2 903 1771 196 132 52 chr3 41703050 41703527 -117896256 - RMER19C LTR ERVK 0 611 1 2 903 850 277 111 40 chr3 41704774 41705352 -117894431 - Lx8 LINE L1 -1677 5967 5321 2 903 543 31 0 0 chr3 41706677 41706742 -117893041 + (TA)n Simple_repeat Simple_repeat 2 66 0 2 903 200 304 63 0 chr3 41706748 41706827 -117892956 - MIR SINE MIR 0 262 179 2 903 260 250 0 0 chr3 41706842 41706902 -117892881 + (CA)n Simple_repeat Simple_repeat 1 60 0 2 903 279 0 0 0 chr3 41706904 41706935 -117892848 + (TC)n Simple_repeat Simple_repeat 1 31 0 2 903 474 49 0 0 chr3 41706935 41706995 -117892788 + (CA)n Simple_repeat Simple_repeat 1 61 0 2 903 376 385 74 35 chr3 41707019 41707248 -117892535 + LTR41B LTR ERVL 31 268 -490 2 903 2001 75 0 0 chr3 41708022 41708287 -117891496 - L1Md_F2 LINE L1 0 6582 6318 2 903 4549 43 4 0 chr3 41708289 41708913 -117890870 + L1Md_F2 LINE L1 5533 6158 -424 2 903 610 243 35 42 chr3 41708956 41709098 -117890685 - RSINE1 SINE B4 -21 144 4 2 903 236 304 107 113 chr3 41709124 41709424 -117890359 - MLT1A0 LTR MaLR -4 361 64 2 903 804 294 177 32 chr3 41709491 41709993 -117889790 - RMER15 LTR ERVL 0 575 1 2 903 337 385 31 31 chr3 41710744 41710905 -117888878 - RSINE1 SINE B4 -2 163 3 2 903 24 32 0 0 chr3 41711101 41711132 -117888651 + AT_rich Low_complexity Low_complexity 1 31 0 2 903 713 258 146 8 chr3 41711158 41711412 -117888371 - Lx8 LINE L1 -858 6615 6327 2 903 472 189 0 9 chr3 41711644 41711751 -117888032 - Lx2B LINE L1 -3 6997 6892 2 903 521 201 142 37 chr3 41712446 41712457 -117887326 - B1_Mur1 SINE Alu 0 149 139 2 903 1201 54 0 0 chr3 41712457 41712604 -117887179 - B1_Mm SINE Alu 0 147 1 2 903 521 201 142 37 chr3 41712604 41712726 -117887057 - B1_Mur1 SINE Alu -11 138 2 2 903 230 248 80 96 chr3 41712956 41713081 -117886702 + Tigger11a DNA MER2_type 454 576 -159 2 903 384 312 105 31 chr3 41713890 41714148 -117885635 - HAL1 LINE L1 -1 2506 2230 2 903 263 214 28 14 chr3 41714161 41714232 -117885551 + (CATA)n Simple_repeat Simple_repeat 1 72 0 2 903 21 0 0 0 chr3 41714478 41714499 -117885284 + AT_rich Low_complexity Low_complexity 1 21 0 2 903 903 278 0 0 chr3 41714500 41714712 -117885071 - B3 SINE B2 -1 215 4 2 903 315 0 0 0 chr3 41715015 41715050 -117884733 + (CA)n Simple_repeat Simple_repeat 2 36 0 2 903 542 298 70 50 chr3 41715154 41715571 -117884212 - L1M5 LINE L1 -1098 5048 4624 2 903 235 109 35 35 chr3 41715573 41715630 -117884153 + (CAAAC)n Simple_repeat Simple_repeat 1 57 0 2 903 229 255 59 120 chr3 41715678 41716070 -117883713 - L1M5 LINE L1 -1584 4562 4195 2 903 213 39 0 0 chr3 41716155 41716181 -117883602 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 2 903 488 313 108 50 chr3 41716209 41716336 -117883447 - L1M5 LINE L1 -2123 4023 3897 2 903 1316 194 165 9 chr3 41716336 41716663 -117883120 - ORR1C1 LTR MaLR 0 378 1 2 903 488 307 108 46 chr3 41716663 41716899 -117882884 - L1M5 LINE L1 -2250 3896 3642 2 903 342 252 27 0 chr3 41716899 41717010 -117882773 - HAL1 LINE L1 -887 1620 1507 2 903 4035 143 38 49 chr3 41717115 41717513 -117882270 - RMER6A LTR ERVK -6 750 338 2 903 912 125 20 59 chr3 41717513 41717717 -117882066 + Lx LINE L1 6459 6654 0 2 903 4035 143 38 49 chr3 41717717 41718074 -117881709 - RMER6A LTR ERVK -419 337 3 2 903 685 331 80 11 chr3 41718305 41718580 -117881203 + MLT1D LTR MaLR 191 484 -21 2 903 2584 262 77 7 chr3 41718915 41719658 -117880125 + Lx7 LINE L1 6140 6934 -762 2 903 1397 163 37 0 chr3 41719654 41719900 -117879883 - Lx4B LINE L1 -367 6691 6437 2 903 328 234 78 0 chr3 41721299 41721376 -117878407 - RSINE1 SINE B4 -47 118 36 2 903 1059 71 0 0 chr3 41721455 41721596 -117878187 + (TCTCC)n Simple_repeat Simple_repeat 1 141 0 2 903 1168 136 10 10 chr3 41721989 41722197 -117877586 + Lx LINE L1 6445 6652 -2 2 903 251 225 14 0 chr3 41722772 41722843 -117876940 + GA-rich Low_complexity Low_complexity 3 74 0 2 903 368 186 39 10 chr3 41723442 41723545 -117876238 + Lx2B LINE L1 6894 6999 -1 2 903 382 238 113 0 chr3 41723588 41723739 -117876044 - Lx9 LINE L1 -73 7571 7404 2 903 512 299 60 0 chr3 41723732 41723899 -117875884 + Lx9 LINE L1 7225 7401 -243 2 903 26 0 0 0 chr3 41725903 41725929 -117873854 + AT_rich Low_complexity Low_complexity 1 26 0 2 903 2676 309 57 19 chr3 41725930 41726690 -117873093 - Lx8 LINE L1 -4 7469 6668 2 903 4950 120 70 44 chr3 41726690 41726991 -117872792 + RMER17A2 LTR ERVK 1 287 -619 2 903 1153 62 0 0 chr3 41726991 41727135 -117872648 + B1_Mus1 SINE Alu 2 145 -3 2 903 4950 120 70 44 chr3 41727135 41727166 -117872617 + RMER17A2 LTR ERVK 288 306 -600 2 903 1095 21 7 14 chr3 41727166 41727310 -117872473 + (TCTCC)n Simple_repeat Simple_repeat 4 146 0 2 903 4950 120 70 44 chr3 41727310 41727859 -117871924 + RMER17A2 LTR ERVK 307 906 0 2 903 2676 309 57 19 chr3 41727859 41728277 -117871506 - Lx8 LINE L1 -806 6667 6247 2 903 231 248 55 0 chr3 41728492 41728601 -117871182 + (TA)n Simple_repeat Simple_repeat 2 116 0 2 903 268 319 41 29 chr3 41728696 41728960 -117870823 - L1M5 LINE L1 -333 5791 5521 2 903 7799 90 19 0 chr3 41729213 41731275 -117868508 + L1_Mus1 LINE L1 4367 6567 0 2 903 338 323 55 8 chr3 41731514 41731642 -117868141 - L1M2 LINE L1 -1312 4831 4698 2 903 606 188 0 145 chr3 41732019 41732062 -117867721 - L1_Mur2 LINE L1 -4400 1480 1444 2 903 1265 34 0 0 chr3 41732062 41732209 -117867574 - B1_Mus2 SINE Alu 0 147 1 2 903 667 188 0 145 chr3 41732209 41732414 -117867369 - L1_Mur2 LINE L1 -4424 1453 1268 2 903 860 285 118 32 chr3 41732861 41733176 -117866607 + RLTR26 LTR ERVK 51 392 -250 2 903 277 292 0 11 chr3 41734122 41734212 -117865571 + CT-rich Low_complexity Low_complexity 2 90 0 2 903 279 229 0 0 chr3 41734221 41734282 -117865501 - tRNA-Ala-GCY_ tRNA tRNA -7 68 8 2 903 278 293 12 0 chr3 41734282 41734294 -117865489 - ID2 SINE ID 0 52 1 2 903 29421 91 10 38 chr3 41735061 41740592 -117859191 + L1Md_F2 LINE L1 208 5585 -298 2 903 7171 90 2 14 chr3 41740593 41741600 -117858183 + L1Md_F2 LINE L1 5587 6581 -1 2 903 962 246 71 57 chr3 41742639 41743002 -117856781 - MTE2a LTR MaLR 0 421 43 2 903 513 0 0 0 chr3 41744188 41744245 -117855538 + (TC)n Simple_repeat Simple_repeat 2 58 0 2 903 22 0 0 0 chr3 41745083 41745105 -117854678 + AT_rich Low_complexity Low_complexity 1 22 0 2 903 369 0 0 0 chr3 41745219 41745260 -117854523 + (TGGGGG)n Simple_repeat Simple_repeat 6 46 0 2 903 4264 52 0 8 chr3 41745340 41745863 -117853920 - L1_Mus1 LINE L1 -1 6566 6048 2 903 254 342 44 30 chr3 41746370 41746561 -117853222 - MIR SINE MIR -8 260 69 2 903 248 317 229 33 chr3 41746881 41747650 -117852133 + L2a LINE L2 2385 3357 -69 2 903 334 235 86 0 chr3 41747655 41747736 -117852047 - ID_B1 SINE B4 -7 217 130 2 903 192 40 0 0 chr3 41748103 41748128 -117851655 + (TG)n Simple_repeat Simple_repeat 2 26 0 2 903 259 322 57 11 chr3 41748130 41748218 -117851565 - B3A SINE B2 -41 157 66 3 903 396 59 0 0 chr3 41748464 41748515 -117851268 + (TAGA)n Simple_repeat Simple_repeat 4 54 0 3 903 228 333 92 16 chr3 41750063 41750377 -117849406 - L1M5 LINE L1 -1019 5127 4790 3 903 218 32 32 0 chr3 41750675 41750706 -117849077 + (TAAA)n Simple_repeat Simple_repeat 1 32 0 3 903 552 275 83 16 chr3 41752050 41752345 -117847438 + ORR1E LTR MaLR 4 366 -13 3 903 796 266 134 8 chr3 41752742 41752981 -117846802 + B4A SINE B4 6 274 -18 3 903 477 0 0 0 chr3 41752984 41753037 -117846746 + (CA)n Simple_repeat Simple_repeat 2 54 0 3 903 867 277 39 5 chr3 41755052 41755259 -117844524 - ID_B1 SINE B4 -5 219 6 3 903 3500 20 2 0 chr3 41755493 41755888 -117843895 - MTA_Mm LTR MaLR 0 396 1 3 903 1153 47 0 0 chr3 41755959 41756155 -117843628 - L1Md_A LINE L1 0 6582 6433 3 903 22 0 0 0 chr3 41756496 41756518 -117843265 + AT_rich Low_complexity Low_complexity 1 22 0 3 903 910 101 0 12 chr3 41756864 41757024 -117842759 + (TG)n Simple_repeat Simple_repeat 2 159 0 3 903 442 333 13 7 chr3 41757030 41757181 -117842602 - B4 SINE B4 -29 263 112 3 903 278 260 8 0 chr3 41757911 41758038 -117841745 + (TCTG)n Simple_repeat Simple_repeat 4 131 0 3 903 2617 81 6 0 chr3 41758917 41759262 -117840521 - L1_Mus3 LINE L1 -6 6632 6286 3 903 191 152 22 0 chr3 41759490 41759536 -117840247 + T-rich Low_complexity Low_complexity 2 48 0 3 903 1189 269 98 30 chr3 41760560 41761028 -117838755 - RMER5 LTR ERV1 -2 532 33 3 903 22 0 0 0 chr3 41763398 41763420 -117836363 + AT_rich Low_complexity Low_complexity 1 22 0 3 903 201 250 0 0 chr3 41763567 41763615 -117836168 + (CAA)n Simple_repeat Simple_repeat 1 48 0 3 903 719 283 18 28 chr3 41763799 41764017 -117835766 - ID_B1 SINE B4 -8 216 1 3 903 752 254 53 10 chr3 41764669 41764876 -117834907 - B3 SINE B2 0 216 1 3 903 2361 194 2 5 chr3 41765558 41765978 -117833805 - MTC LTR MaLR 0 421 3 3 903 222 37 0 0 chr3 41768193 41768220 -117831563 + (TC)n Simple_repeat Simple_repeat 1 27 0 3 903 414 0 0 0 chr3 41768222 41768268 -117831515 + (TG)n Simple_repeat Simple_repeat 2 47 0 3 903 583 288 200 27 chr3 41768276 41768501 -117831282 - B4A SINE B4 -1 291 28 3 903 618 332 25 45 chr3 41769796 41769998 -117829785 + B3A SINE B2 1 198 0 3 903 1993 194 97 3 chr3 41770013 41770396 -117829387 + MTD LTR MaLR 1 419 0 3 903 730 191 204 17 chr3 41770742 41770923 -117828860 - B3 SINE B2 0 216 2 3 903 419 315 88 95 chr3 41771035 41771298 -117828485 + MER77 LTR ERVL 12 272 -335 3 903 1679 203 24 29 chr3 41772492 41772868 -117826915 + ORR1D1 LTR MaLR 1 374 0 3 903 229 330 45 24 chr3 41772969 41773258 -117826525 + L1MEc LINE L1 1298 1592 -4808 3 903 28951 94 58 24 chr3 41773312 41776664 -117823119 + Lx3A LINE L1 208 3871 -2015 3 903 1124 82 0 7 chr3 41776664 41776811 -117822972 - B1_Mus2 SINE Alu -1 146 1 3 903 28951 94 27 26 chr3 41776811 41779925 -117819858 + Lx3A LINE L1 3871 6965 -16 3 903 301 0 68 0 chr3 41779925 41779969 -117819814 + (TAAA)n Simple_repeat Simple_repeat 4 50 0 3 903 233 250 61 111 chr3 41781045 41781144 -117818639 - LTR32 LTR ERVL -251 220 127 3 903 292 275 12 12 chr3 41782268 41782349 -117817434 + GA-rich Low_complexity Low_complexity 4 84 0 3 903 533 296 136 19 chr3 41782716 41782974 -117816809 + L1MD LINE L1 2466 2753 -3393 3 903 189 0 0 0 chr3 41783053 41783074 -117816709 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 3 903 403 331 33 11 chr3 41783179 41783491 -117816292 + L1M4 LINE L1 3682 4003 -2143 3 903 832 301 94 11 chr3 41783859 41784404 -117815379 + L1M4 LINE L1 4077 4666 -1480 3 903 297 0 0 0 chr3 41784933 41784966 -117814817 + (TG)n Simple_repeat Simple_repeat 1 33 0 3 903 856 296 23 43 chr3 41784984 41785242 -117814541 - B4 SINE B4 -16 276 24 3 903 192 428 41 0 chr3 41785471 41785616 -117814167 - L2c LINE L2 -187 3200 3050 3 903 182 360 79 79 chr3 41785654 41785774 -117814009 - L2c LINE L2 -472 2947 2825 3 903 981 256 105 31 chr3 41785774 41786125 -117813658 - MTEa LTR MaLR -2 377 1 3 903 182 360 79 79 chr3 41786125 41786284 -117813499 - L2c LINE L2 -595 2824 2669 3 903 618 99 18 0 chr3 41786462 41786573 -117813210 - Lx LINE L1 -22 7622 7510 3 903 6374 178 34 32 chr3 41786598 41787962 -117811821 - Lx4A LINE L1 0 7058 5693 3 903 4431 133 8 0 chr3 41787943 41788689 -117811094 - L1_Mur2 LINE L1 -3064 2813 2062 3 903 576 0 0 0 chr3 41788691 41788755 -117811028 + (GA)n Simple_repeat Simple_repeat 1 64 0 3 903 4770 88 49 0 chr3 41788774 41789489 -117810294 - Lx LINE L1 -194 6460 5711 3 903 794 88 84 0 chr3 41789488 41789647 -117810136 - L1_Mur2 LINE L1 -5869 1001 853 3 903 31999 84 13 9 chr3 41789650 41795834 -117803949 - L1Md_F2 LINE L1 -19 6563 356 3 903 264 285 14 110 chr3 41796529 41796675 -117803108 - MLT1A0 LTR MaLR -15 375 244 3 903 698 233 134 40 chr3 41796720 41796921 -117802862 - ID_B1 SINE B4 0 224 5 3 903 497 262 26 40 chr3 41796914 41797065 -117802718 - MLT1A0 LTR MaLR -205 160 12 3 903 187 340 40 20 chr3 41797074 41797173 -117802610 + L2a LINE L2 3326 3426 0 3 903 31637 73 6 13 chr3 41797306 41802443 -117797340 + L1Md_F2 LINE L1 487 5586 -297 3 903 8005 52 1 2 chr3 41802443 41803436 -117796347 + L1Md_F2 LINE L1 5587 6578 -4 3 903 558 328 48 21 chr3 41803505 41803692 -117796091 + B3A SINE B2 10 201 -15 3 903 28 29 0 0 chr3 41805843 41805878 -117793905 + AT_rich Low_complexity Low_complexity 1 35 0 3 903 403 247 196 0 chr3 41806050 41806147 -117793636 - B1F SINE Alu -33 116 1 3 903 261 0 0 0 chr3 41806691 41806720 -117793063 + (GA)n Simple_repeat Simple_repeat 1 29 0 3 903 281 299 0 0 chr3 41808143 41808254 -117791529 + (CA)n Simple_repeat Simple_repeat 1 111 0 3 903 248 132 0 0 chr3 41808255 41808293 -117791490 - RMER6D LTR ERVK -680 40 3 3 903 470 260 7 58 chr3 41811782 41811937 -117787846 - Lx5 LINE L1 -779 6271 6125 3 112 3671 196 62 4 chr3 41811930 41812676 -117787107 + Lx5 LINE L1 6259 7047 -3 3 904 537 16 0 0 chr3 41812938 41813000 -117786783 + (CA)n Simple_repeat Simple_repeat 1 62 0 3 904 181 372 58 62 chr3 41813190 41813431 -117786352 + L2 LINE L2 2240 2479 -940 3 904 342 0 0 0 chr3 41813450 41813488 -117786295 + (TG)n Simple_repeat Simple_repeat 2 39 0 3 904 24 0 0 0 chr3 41814546 41814570 -117785213 + AT_rich Low_complexity Low_complexity 1 24 0 3 904 28 79 0 0 chr3 41815419 41815482 -117784301 + AT_rich Low_complexity Low_complexity 1 63 0 3 904 554 294 90 53 chr3 41815513 41815779 -117784004 + B4A SINE B4 1 276 -16 3 904 416 35 35 0 chr3 41815807 41815864 -117783919 + (TATG)n Simple_repeat Simple_repeat 1 59 0 3 904 435 308 24 48 chr3 41815914 41816081 -117783702 + RSINE1 SINE B4 1 163 -2 3 904 183 139 0 0 chr3 41816104 41816140 -117783643 + (T)n Simple_repeat Simple_repeat 1 36 0 3 904 1173 56 0 0 chr3 41816142 41816284 -117783499 - B1_Mm SINE Alu -5 142 1 3 904 180 111 0 0 chr3 41816302 41816329 -117783454 + (GA)n Simple_repeat Simple_repeat 2 28 0 3 904 210 150 0 0 chr3 41816521 41816561 -117783222 + (T)n Simple_repeat Simple_repeat 1 40 0 3 904 3814 56 8 0 chr3 41816633 41817112 -117782671 - L1Md_F2 LINE L1 -2 6580 6098 3 904 205 154 0 49 chr3 41817466 41817507 -117782276 + L3b LINE CR1 436 474 -8 3 904 332 85 0 0 chr3 41818730 41818777 -117781006 - MTC LTR MaLR -12 409 343 3 904 1313 225 196 87 chr3 41818780 41819184 -117780599 - MT2A LTR ERVL -85 448 1 3 904 427 333 111 6 chr3 41819616 41819788 -117779995 - B4A SINE B4 -85 207 18 3 904 402 21 0 0 chr3 41821631 41821678 -117778105 + (TG)n Simple_repeat Simple_repeat 1 47 0 3 904 186 366 0 14 chr3 41821956 41822028 -117777755 - L2a LINE L2 -63 3363 3293 3 904 718 284 0 0 chr3 41822075 41822223 -117777560 + RSINE1 SINE B4 1 148 -17 3 904 616 265 0 22 chr3 41822272 41822407 -117777376 + ID_B1 SINE B4 79 210 -14 3 904 191 114 29 0 chr3 41822409 41822444 -117777339 + (GA)n Simple_repeat Simple_repeat 1 36 0 3 904 274 280 74 74 chr3 41822506 41822641 -117777142 - L2a LINE L2 -262 3164 3030 3 904 582 328 113 34 chr3 41822742 41823272 -117776511 - L2a LINE L2 -2084 1335 764 3 904 507 254 195 43 chr3 41823297 41823671 -117776112 + L1MA6 LINE L1 3786 4216 -1927 3 904 1001 232 136 31 chr3 41823685 41824170 -117775613 + L1MA6 LINE L1 5256 5791 -509 3 904 260 277 100 64 chr3 41824195 41824446 -117775337 + L1MA6 LINE L1 5991 6250 -50 3 904 21 36 0 0 chr3 41824479 41824507 -117775276 + AT_rich Low_complexity Low_complexity 1 28 0 3 904 328 203 0 0 chr3 41824627 41824686 -117775097 + MTE2a LTR MaLR 6 64 -315 3 904 22 56 0 0 chr3 41824758 41824794 -117774989 + AT_rich Low_complexity Low_complexity 1 36 0 3 904 1923 205 52 18 chr3 41824795 41824920 -117774863 - Lx9 LINE L1 -1 7643 7511 3 904 630 101 0 0 chr3 41824920 41825029 -117774754 + (CA)n Simple_repeat Simple_repeat 2 110 0 3 904 1923 205 52 18 chr3 41825029 41825405 -117774378 - Lx9 LINE L1 -134 7510 7126 3 904 888 232 50 63 chr3 41825446 41825745 -117774038 + MTE2a LTR MaLR 70 364 -15 3 904 180 0 0 0 chr3 41826221 41826241 -117773542 + (TC)n Simple_repeat Simple_repeat 1 20 0 3 904 244 341 131 18 chr3 41827252 41827473 -117772310 + MIR SINE MIR 17 262 0 3 904 38603 15 1 6 chr3 41828564 41834761 -117765022 - L1Md_A LINE L1 0 6582 421 3 904 644 234 21 7 chr3 41835122 41835264 -117764519 - MTE2b LTR MaLR 0 379 236 3 904 692 255 121 60 chr3 41835615 41835980 -117763803 + RMER2 LTR ERV1 27 556 -11 3 904 804 298 18 32 chr3 41836143 41836388 -117763395 - ID_B1 SINE B4 -46 246 6 3 904 265 239 90 0 chr3 41836389 41836456 -117763327 - Lx7 LINE L1 -584 7112 7040 3 904 189 337 75 53 chr3 41837538 41837632 -117762151 + L2 LINE L2 1916 2011 -1408 3 904 522 0 0 0 chr3 41837878 41837936 -117761847 + (TC)n Simple_repeat Simple_repeat 1 58 0 3 904 483 18 0 0 chr3 41837936 41837991 -117761792 + (CA)n Simple_repeat Simple_repeat 1 56 0 3 904 278 289 58 0 chr3 41838075 41838196 -117761587 - L1ME1 LINE L1 -286 5893 5766 3 904 461 234 126 5 chr3 41838255 41838470 -117761313 - L1M4 LINE L1 -3310 2836 2596 3 904 528 317 94 10 chr3 41838674 41838983 -117760800 - Lx8 LINE L1 -2 7471 7137 4 904 823 53 0 0 chr3 41839696 41839809 -117759974 - L1_Mm LINE L1 -2904 2979 2867 4 904 780 266 45 9 chr3 41839806 41840026 -117759757 - Lx7 LINE L1 -1260 6436 6209 3 904 414 0 0 0 chr3 41840026 41840072 -117759711 + (CA)n Simple_repeat Simple_repeat 2 47 0 4 904 3191 227 40 106 chr3 41840104 41841298 -117758485 + Lx7 LINE L1 4608 5722 -158 4 904 2610 191 66 11 chr3 41841306 41841918 -117757865 + RMER13A LTR ERVK 1 906 -2 4 904 1029 258 69 11 chr3 41841922 41842298 -117757485 + Lx7 LINE L1 5731 6128 -1568 4 904 192 152 0 0 chr3 41844353 41844386 -117755397 + A-rich Low_complexity Low_complexity 1 33 0 4 904 606 264 62 31 chr3 41845125 41845320 -117754463 + RMER5 LTR ERV1 235 435 -99 4 904 592 323 19 6 chr3 41845380 41845536 -117754247 - RSINE1 SINE B4 -5 160 3 4 904 320 210 16 0 chr3 41845543 41845605 -117754178 + Tigger5 DNA MER2_type 2344 2406 0 4 904 690 109 0 0 chr3 41845710 41845829 -117753954 + (CA)n Simple_repeat Simple_repeat 2 120 0 4 904 185 383 83 25 chr3 41845951 41846227 -117753556 + L2 LINE L2 2740 3031 -388 4 904 2917 249 1 1 chr3 41847886 41848586 -117751197 + RNERVK23-int LTR ERVK 4332 5031 -3186 4 904 552 263 7 7 chr3 41848582 41848735 -117751048 + RNERVK23-int LTR ERVK 7662 7814 -403 4 904 237 79 53 0 chr3 41849194 41849232 -117750551 - L1_Mus1 LINE L1 -460 6107 6068 4 904 253 29 0 0 chr3 41849199 41849233 -117750550 - Lx LINE L1 -554 6100 6067 4 904 249 0 0 0 chr3 41849225 41849254 -117750529 - L1_Mus3 LINE L1 -403 6235 6207 4 904 5365 82 15 37 chr3 41849481 41850271 -117749512 - L1_Mus3 LINE L1 -2 6636 5864 4 904 3089 140 2 4 chr3 41850271 41850800 -117748983 + L1_Mm LINE L1 4280 4807 -1076 4 904 27013 159 56 55 chr3 41850800 41852608 -117747175 + L1_Mus2 LINE L1 384 2190 -3693 4 904 1692 85 60 8 chr3 41852608 41852857 -117746926 - L1_Mus1 LINE L1 0 6567 6306 4 904 27013 111 26 34 chr3 41852857 41853977 -117745806 + L1_Mus2 LINE L1 2191 3177 -2706 4 904 249 57 0 0 chr3 41853977 41854012 -117745771 + (TTTTG)n Simple_repeat Simple_repeat 1 35 0 4 904 27013 103 25 24 chr3 41854012 41857279 -117742504 + L1_Mus2 LINE L1 3178 6566 0 4 904 1898 84 7 7 chr3 41857270 41857547 -117742236 + L1_Mm LINE L1 5309 5585 -298 4 904 1142 83 0 0 chr3 41857681 41857825 -117741958 - B1_Mm SINE Alu 0 147 4 4 904 648 290 62 9 chr3 41858338 41858564 -117741219 + Lx8 LINE L1 6530 6767 -706 4 904 781 86 21 0 chr3 41858651 41858791 -117740992 + (TCTCTG)n Simple_repeat Simple_repeat 2 144 0 4 904 817 163 7 22 chr3 41858791 41858918 -117740865 - B1_Mus2 SINE Alu -12 135 9 4 904 304 260 76 48 chr3 41858824 41858929 -117740854 - B4A SINE B4 -98 194 87 4 904 313 311 9 28 chr3 41859268 41859374 -117740409 + ID_B1 SINE B4 119 222 -2 4 904 216 135 0 0 chr3 41859463 41859500 -117740283 + (CAAAA)n Simple_repeat Simple_repeat 3 39 0 4 904 368 276 18 93 chr3 41859636 41859797 -117739986 + B4 SINE B4 118 271 -21 4 904 336 48 0 0 chr3 41859802 41859844 -117739939 + (TG)n Simple_repeat Simple_repeat 2 43 0 4 904 230 339 58 58 chr3 41861486 41861796 -117737987 - L3 LINE CR1 -6 4483 4174 4 904 239 231 0 0 chr3 41863205 41863257 -117736526 - MIRb SINE MIR -28 240 189 4 904 575 307 129 50 chr3 41863999 41864301 -117735482 - Tigger5 DNA MER2_type -32 334 9 4 904 352 67 0 32 chr3 41864586 41864648 -117735135 + (TTTA)n Simple_repeat Simple_repeat 1 60 0 4 904 4484 182 35 11 chr3 41864648 41865546 -117734237 - Lx2 LINE L1 -27 6970 6052 4 904 21 0 0 0 chr3 41865677 41865698 -117734085 + AT_rich Low_complexity Low_complexity 1 21 0 4 904 291 291 92 17 chr3 41865981 41866100 -117733683 + L2a LINE L2 3299 3426 0 4 904 510 309 0 0 chr3 41866218 41866328 -117733455 + PB1D7 SINE Alu 11 120 0 4 904 2217 39 0 0 chr3 41866553 41866833 -117732950 + L1Md_F2 LINE L1 5306 5585 -298 4 904 7901 55 0 12 chr3 41866834 41867830 -117731953 + L1Md_F2 LINE L1 5587 6570 -12 4 904 268 250 0 0 chr3 41867934 41868002 -117731781 + T-rich Low_complexity Low_complexity 1 68 0 4 904 21 0 0 0 chr3 41868219 41868240 -117731543 + AT_rich Low_complexity Low_complexity 1 21 0 4 904 489 253 0 0 chr3 41868644 41868806 -117730977 + (TG)n Simple_repeat Simple_repeat 1 162 0 4 904 820 184 0 54 chr3 41871458 41871607 -117728176 + B1_Mur4 SINE Alu 1 141 -9 4 904 243 0 0 0 chr3 41871607 41871634 -117728149 + (CAGA)n Simple_repeat Simple_repeat 2 28 0 4 904 279 0 0 0 chr3 41872224 41872255 -117727528 + (TG)n Simple_repeat Simple_repeat 2 32 0 4 904 778 20 0 20 chr3 41872541 41872643 -117727140 + (TTTC)n Simple_repeat Simple_repeat 1 100 0 4 904 331 69 69 0 chr3 41874537 41874609 -117725174 + (GA)n Simple_repeat Simple_repeat 2 78 0 4 904 3317 86 34 2 chr3 41874973 41875439 -117724344 + L1_Mus3 LINE L1 6156 6636 -2 4 904 344 378 14 14 chr3 41875563 41875708 -117724075 - B1_Mur1 SINE Alu -3 146 2 4 904 465 19 0 0 chr3 41875979 41876033 -117723750 + (TA)n Simple_repeat Simple_repeat 2 55 0 4 904 222 246 0 0 chr3 41876292 41876353 -117723430 + (TA)n Simple_repeat Simple_repeat 2 62 0 4 904 360 111 0 0 chr3 41876359 41876422 -117723361 + (TG)n Simple_repeat Simple_repeat 1 63 0 4 904 1101 218 115 37 chr3 41876426 41876722 -117723061 + IAPEY3_LTR LTR ERVK 14 332 0 4 904 189 0 0 0 chr3 41878635 41878656 -117721127 + (T)n Simple_repeat Simple_repeat 1 21 0 4 904 709 241 213 13 chr3 41878990 41879229 -117720554 - B4 SINE B4 -5 287 1 4 904 410 229 45 146 chr3 41879397 41879415 -117720368 - B2_Mm2 SINE B2 -16 179 161 4 904 354 123 0 0 chr3 41879415 41879472 -117720311 + (TG)n Simple_repeat Simple_repeat 1 57 0 4 904 544 229 45 146 chr3 41879472 41879652 -117720131 - B3A SINE B2 -18 180 1 4 904 952 156 84 0 chr3 41880480 41880659 -117719124 + URR1B DNA MER1_type 32 225 0 4 904 1771 185 43 3 chr3 41881209 41881613 -117718170 + Lx5 LINE L1 5497 5919 -1131 4 904 521 222 86 0 chr3 41881599 41881716 -117718067 + Lx5 LINE L1 6723 6849 -611 4 904 374 172 81 0 chr3 41881744 41881843 -117717940 + Lx9 LINE L1 7538 7644 0 4 904 195 293 34 17 chr3 41881914 41881973 -117717810 - L2a LINE L2 -16 3410 3351 4 904 1489 263 101 8 chr3 41882345 41882991 -117716792 - Lx8 LINE L1 -5 7468 6742 4 904 809 240 47 61 chr3 41883134 41883347 -117716436 + B3 SINE B2 2 211 -5 4 904 374 308 39 46 chr3 41883562 41883715 -117716068 + MLT1A0 LTR MaLR 214 365 0 4 904 3434 243 117 19 chr3 41883747 41884298 -117715485 + Lx6 LINE L1 6284 6881 -579 4 904 612 0 0 0 chr3 41884298 41884366 -117715417 + (GA)n Simple_repeat Simple_repeat 1 68 0 4 904 3434 243 117 19 chr3 41884366 41884868 -117714915 + Lx6 LINE L1 6882 7440 -20 4 904 3403 15 0 0 chr3 41885816 41886223 -117713560 + L1Md_T LINE L1 5180 5586 -297 4 904 9056 4 0 0 chr3 41886223 41887258 -117712525 + L1Md_T LINE L1 5587 6582 0 4 904 1858 183 17 6 chr3 41887782 41888144 -117711639 + Lx LINE L1 6277 6642 -12 4 904 252 0 0 0 chr3 41888145 41888173 -117711610 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 4 904 446 295 9 38 chr3 41889173 41889410 -117710373 + L1VL1 LINE L1 45 387 -6035 4 904 328 312 22 7 chr3 41889468 41889607 -117710176 + L1Md_F LINE L1 678 818 -5801 4 904 2188 189 13 0 chr3 41889604 41890079 -117709704 + L1Md_F LINE L1 728 1208 -5411 4 904 407 158 38 55 chr3 41890086 41890251 -117709532 + L1Md_F LINE L1 987 1208 -5411 4 904 11737 45 0 1 chr3 41890271 41891788 -117707995 - L1_Mm LINE L1 -650 5233 3718 4 904 3568 60 2 8 chr3 41891788 41892261 -117707522 + L1Md_F3 LINE L1 6115 6584 0 4 904 25331 107 9 4 chr3 41892262 41893905 -117705878 + L1Md_F LINE L1 1179 2828 -3058 4 904 3233 58 2 0 chr3 41893905 41894300 -117705483 + MTA_Mm LTR MaLR 1 396 0 4 904 25331 112 10 5 chr3 41894300 41896770 -117703013 + L1Md_F LINE L1 2829 5314 -572 4 904 477 0 0 0 chr3 41896939 41896992 -117702791 + (CA)n Simple_repeat Simple_repeat 1 53 0 4 904 4953 64 44 0 chr3 41897309 41897966 -117701817 - L1_Mus1 LINE L1 0 6567 5882 4 904 1175 287 99 61 chr3 41897968 41899163 -117700620 - L1MB3 LINE L1 -47 6136 4880 4 904 870 10 0 0 chr3 41900544 41900643 -117699140 + (TTTC)n Simple_repeat Simple_repeat 1 99 0 4 904 279 321 39 21 chr3 41901654 41901890 -117697893 - L1MA4A LINE L1 -386 5917 5703 4 904 226 264 39 28 chr3 41902423 41902562 -117697221 - MIRc SINE MIR -11 257 113 4 904 736 154 58 14 chr3 41903875 41904013 -117695770 + B1_Mur2 SINE Alu 2 145 -4 4 904 401 0 0 20 chr3 41904017 41904067 -117695716 + (TAA)n Simple_repeat Simple_repeat 2 50 0 4 904 21 0 0 0 chr3 41904161 41904182 -117695601 + AT_rich Low_complexity Low_complexity 1 21 0 4 904 357 294 47 38 chr3 41904182 41904288 -117695495 - PB1D10 SINE Alu -10 107 1 4 904 266 309 18 0 chr3 41904342 41904435 -117695348 - MIR SINE MIR -93 175 71 4 904 3776 144 42 9 chr3 41904622 41905261 -117694522 + RLTR25A LTR ERVK 6 665 -438 4 904 759 112 15 15 chr3 41905335 41905471 -117694312 - Lx LINE L1 -2 6652 6517 4 904 632 88 0 17 chr3 41905805 41905921 -117693862 + L1_Mus4 LINE L1 6521 6634 -2 4 904 189 213 139 69 chr3 41905992 41906093 -117693690 - MIR3 SINE MIR -12 196 89 4 904 303 203 0 0 chr3 41907876 41907945 -117691838 + CT-rich Low_complexity Low_complexity 2 70 0 4 904 263 238 47 59 chr3 41908625 41908710 -117691073 + L1MA5A LINE L1 5848 5931 -366 4 904 22 0 0 0 chr3 41909298 41909320 -117690463 + AT_rich Low_complexity Low_complexity 1 22 0 4 904 620 300 0 24 chr3 41912796 41912960 -117686823 + B3A SINE B2 5 164 -34 4 904 1109 91 0 19 chr3 41913133 41913290 -117686493 - MTB_Mm LTR MaLR -75 332 179 4 904 5753 69 17 0 chr3 41913309 41914058 -117685725 - L1_Mus2 LINE L1 -1 6565 5804 4 904 335 250 11 116 chr3 41914058 41914153 -117685630 + B3 SINE B2 112 198 0 4 904 394 248 93 42 chr3 41914293 41914411 -117685372 + B1F1 SINE Alu 25 148 -1 4 904 405 0 0 0 chr3 41914608 41914653 -117685130 + (TA)n Simple_repeat Simple_repeat 2 46 0 4 904 484 333 69 26 chr3 41918037 41918278 -117681505 - MLT1J LTR MaLR -108 336 104 4 904 8046 75 4 3 chr3 41918831 41919975 -117679808 + L1_Mm LINE L1 4312 5457 -426 4 904 38118 10 0 22 chr3 41920027 41925815 -117673968 + L1_Mus1 LINE L1 1 5586 -297 5 904 9086 1 0 0 chr3 41925815 41926810 -117672973 + L1Md_A LINE L1 5587 6581 -1 5 904 38118 55 1 11 chr3 41926810 41927925 -117671858 + L1_Mus1 LINE L1 5587 6567 0 5 904 25 31 0 0 chr3 41928391 41928423 -117671360 + AT_rich Low_complexity Low_complexity 1 32 0 5 904 243 237 282 26 chr3 41929232 41929349 -117670434 + MER5A DNA MER1_type 40 186 -3 5 904 213 39 0 0 chr3 41930483 41930509 -117669274 + (T)n Simple_repeat Simple_repeat 1 26 0 5 904 1165 62 0 0 chr3 41930908 41931054 -117668729 - B1_Mm SINE Alu -1 146 1 5 904 653 24 0 12 chr3 41931138 41931222 -117668561 + (TCTA)n Simple_repeat Simple_repeat 4 86 0 5 904 353 317 20 0 chr3 41932291 41932392 -117667391 - PB1D7 SINE Alu -8 112 10 5 904 801 256 155 60 chr3 41932430 41932766 -117667017 + MTEa LTR MaLR 3 370 -9 5 904 207 0 0 0 chr3 41934056 41934079 -117665704 + (CA)n Simple_repeat Simple_repeat 2 24 0 5 904 589 285 185 19 chr3 41934335 41934499 -117665284 - MTEa LTR MaLR 0 379 210 5 904 918 123 0 0 chr3 41934499 41934670 -117665113 + (GA)n Simple_repeat Simple_repeat 2 172 0 5 904 589 285 185 19 chr3 41934670 41934830 -117664953 - MTEa LTR MaLR -170 209 2 5 904 1252 133 5 0 chr3 41935095 41935283 -117664500 - URR1A DNA MER1_type -5 221 33 5 904 282 289 22 97 chr3 41935298 41935432 -117664351 + MLT1A LTR MaLR 226 349 -25 5 904 204 419 35 0 chr3 41936648 41936762 -117663021 - MIRb SINE MIR -61 147 34 5 904 756 161 73 0 chr3 41936969 41937106 -117662677 + B1_Mus2 SINE Alu 1 147 0 5 904 273 340 10 29 chr3 41938108 41938211 -117661572 - MamRep137 DNA TcMar? -336 108 8 5 904 4001 72 0 0 chr3 41938347 41938891 -117660892 - L1_Mm LINE L1 -806 5077 4534 5 904 6236 54 3 1 chr3 41938891 41939673 -117660110 + L1Md_F2 LINE L1 5786 6568 -14 5 904 261 128 0 0 chr3 41939686 41939733 -117660050 + (CATATA)n Simple_repeat Simple_repeat 4 50 0 5 904 22 0 0 0 chr3 41939768 41939790 -117659993 + AT_rich Low_complexity Low_complexity 1 22 0 5 904 3093 65 2 0 chr3 41939804 41940202 -117659581 + L1Md_F2 LINE L1 6172 6570 -12 5 904 1208 309 8 22 chr3 41940414 41940781 -117659002 + MTE2b LTR MaLR 13 374 -5 5 904 356 298 16 37 chr3 41941448 41941612 -117658171 + B4 SINE B4 60 278 -14 5 904 480 48 0 0 chr3 41941700 41941763 -117658020 + (CA)n Simple_repeat Simple_repeat 2 64 0 5 904 286 298 86 31 chr3 41942416 41942601 -117657182 + MTEa LTR MaLR 19 215 -144 5 904 1121 122 0 28 chr3 41942616 41942793 -117656990 - B2_Mm2 SINE B2 -23 172 1 5 904 307 132 36 36 chr3 41942793 41942848 -117656935 + MTEa LTR MaLR 311 365 -14 5 905 183 80 0 0 chr3 41943306 41943331 -117656452 + (TTTC)n Simple_repeat Simple_repeat 3 27 0 5 905 183 42 0 0 chr3 41943572 41943596 -117656187 + (TG)n Simple_repeat Simple_repeat 1 24 0 5 905 499 161 92 0 chr3 41944117 41944204 -117655579 - RSINE1 SINE B4 -68 97 3 5 905 761 241 21 31 chr3 41944374 41944567 -117655216 + Lx5 LINE L1 6859 7049 -1 5 905 369 0 0 0 chr3 41944674 41944715 -117655068 + (TTTTC)n Simple_repeat Simple_repeat 3 43 0 5 905 1109 88 0 13 chr3 41944743 41944892 -117654891 - B1_Mus1 SINE Alu -1 147 1 5 905 582 15 0 0 chr3 41945341 41945408 -117654375 + (GA)n Simple_repeat Simple_repeat 2 68 0 5 905 238 204 0 0 chr3 41946647 41946696 -117653087 - Lx7 LINE L1 -612 7084 7036 5 905 563 285 40 0 chr3 41946702 41946902 -117652881 + Lx7 LINE L1 7160 7367 -329 5 905 32 26 0 0 chr3 41947058 41947097 -117652686 + AT_rich Low_complexity Low_complexity 1 39 0 5 905 813 150 0 0 chr3 41947217 41947397 -117652386 + (CA)n Simple_repeat Simple_repeat 1 180 0 5 905 1597 27 0 21 chr3 41947984 41948174 -117651609 + B2_Mm1t SINE B2 1 186 -7 5 905 598 303 15 53 chr3 41948257 41948463 -117651320 - Tigger5 DNA MER2_type -2201 205 8 5 905 226 271 86 0 chr3 41948777 41948847 -117650936 - MLT1J-int LTR MaLR -1058 329 254 5 905 2295 83 9 15 chr3 41949295 41949625 -117650158 - L1_Mus3 LINE L1 -8 6630 6303 5 905 852 101 0 0 chr3 41949625 41949744 -117650039 + L1_Mus3 LINE L1 6189 6307 -331 5 905 504 330 49 6 chr3 41950413 41950596 -117649187 + MLT1A0 LTR MaLR 175 365 0 5 905 272 137 0 19 chr3 41950955 41951007 -117648776 + CT-rich Low_complexity Low_complexity 4 54 0 5 905 317 159 0 16 chr3 41953018 41953063 -117646720 + polypyrimidine Low_complexity Low_complexity 21 65 0 5 905 1242 100 0 0 chr3 41953063 41953243 -117646540 + (TTCTC)n Simple_repeat Simple_repeat 1 180 0 5 905 317 159 0 16 chr3 41953243 41953261 -117646522 + polypyrimidine Low_complexity Low_complexity 3 20 0 5 905 879 263 23 5 chr3 41953675 41953889 -117645894 + ORR1D1 LTR MaLR 39 256 -118 5 905 970 204 62 79 chr3 41953889 41954254 -117645529 - RLTRETN_Mm LTR ERVK 0 403 1 5 905 485 243 90 0 chr3 41954254 41954359 -117645424 + ORR1D1 LTR MaLR 253 367 -3 5 905 856 316 14 44 chr3 41954364 41954639 -117645144 - ORR1E LTR MaLR -64 295 29 5 905 486 0 0 0 chr3 41954645 41954699 -117645084 + (TCTA)n Simple_repeat Simple_repeat 4 57 0 5 905 219 229 0 0 chr3 41954983 41955044 -117644739 + (TG)n Simple_repeat Simple_repeat 1 61 0 5 905 21 0 0 0 chr3 41956895 41956916 -117642867 + AT_rich Low_complexity Low_complexity 1 21 0 5 905 273 119 0 0 chr3 41956921 41956963 -117642820 + (TATG)n Simple_repeat Simple_repeat 1 42 0 5 905 299 267 38 51 chr3 41956965 41957044 -117642739 - RSINE1 SINE B4 0 165 88 5 905 996 178 183 0 chr3 41959747 41959966 -117639817 - Lx6 LINE L1 -26 7434 7176 5 905 186 71 0 0 chr3 41959997 41960025 -117639758 + (TG)n Simple_repeat Simple_repeat 1 28 0 5 905 665 339 57 21 chr3 41960031 41960311 -117639472 - B4 SINE B4 -2 290 1 5 905 559 226 13 0 chr3 41961408 41961567 -117638216 + (TG)n Simple_repeat Simple_repeat 1 161 0 5 905 311 280 0 51 chr3 41961567 41961646 -117638137 - B4A SINE B4 0 292 218 5 905 293 290 5 69 chr3 41961825 41962014 -117637769 + (TATG)n Simple_repeat Simple_repeat 4 180 0 5 905 360 209 0 0 chr3 41962040 41962131 -117637652 + (TG)n Simple_repeat Simple_repeat 2 92 0 5 905 210 118 0 0 chr3 41964811 41964845 -117634938 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 5 905 276 313 41 47 chr3 41968854 41969025 -117630758 + LTR81A LTR ERV1? 18 187 -1163 5 905 21 0 0 0 chr3 41969548 41969569 -117630214 + AT_rich Low_complexity Low_complexity 1 21 0 5 905 5248 72 0 0 chr3 41969569 41970239 -117629544 - L1_Mus1 LINE L1 -4 6563 5894 5 905 1396 202 17 34 chr3 41970718 41971321 -117628462 + L1_Mur2 LINE L1 892 1421 -4456 5 905 464 223 41 8 chr3 41971321 41971443 -117628340 + RLTR25A LTR ERVK 389 514 -589 5 905 3675 181 45 0 chr3 41971443 41972216 -117627567 + L1_Mur2 LINE L1 3525 4332 -1545 5 905 1914 201 23 3 chr3 41972228 41972613 -117627170 - ORR1B1 LTR MaLR -1 393 1 5 905 1665 152 40 3 chr3 41972613 41972896 -117626887 - ORR1B1-int LTR MaLR 0 1509 1220 5 905 540 0 0 0 chr3 41972896 41972956 -117626827 + (CAAG)n Simple_repeat Simple_repeat 2 61 0 5 905 1665 152 40 3 chr3 41972956 41972976 -117626807 - ORR1B1-int LTR MaLR -290 1219 1197 5 905 6068 62 6 8 chr3 41973024 41973810 -117625973 - L1Md_F2 LINE L1 -15 6567 5783 5 905 7663 48 3 2 chr3 41973815 41975134 -117624649 - L1Md_F2 LINE L1 -11 6571 5250 5 905 369 0 0 0 chr3 41975134 41975175 -117624608 + (TA)n Simple_repeat Simple_repeat 1 41 0 5 905 4933 83 0 1 chr3 41975175 41975350 -117624433 - L1Md_F2 LINE L1 -634 5249 5237 5 905 36676 56 8 9 chr3 41975347 41981865 -117617918 - L1Md_T LINE L1 -1 6581 98 5 905 8560 81 9 7 chr3 41981866 41983951 -117615832 - L1Md_F LINE L1 -3414 2469 382 5 905 1790 72 0 0 chr3 41983951 41984187 -117615596 - L1_Mm LINE L1 -86 5797 5562 5 905 1489 211 81 10 chr3 41984199 41984508 -117615275 - ORR1B1-int LTR MaLR -385 1124 796 5 905 548 250 28 28 chr3 41984508 41984652 -117615131 - B1_Mus2 SINE Alu -1 146 3 5 905 487 222 33 41 chr3 41984652 41984676 -117615107 - ORR1B1-int LTR MaLR -1097 866 847 5 905 1217 42 0 0 chr3 41984754 41984896 -117614887 + B1_Mm SINE Alu 1 142 -5 5 905 261 22 65 0 chr3 41984899 41984945 -117614838 + (CAAA)n Simple_repeat Simple_repeat 2 50 0 5 905 299 140 0 109 chr3 41984948 41985012 -117614771 - ORR1B1-int LTR MaLR -1249 714 658 5 905 537 226 22 17 chr3 41984965 41985104 -117614679 - MT2B LTR ERVL -312 163 17 5 905 1010 190 25 13 chr3 41985104 41985339 -117614444 - L1Md_A LINE L1 -6035 689 452 5 905 1336 112 26 83 chr3 41985347 41985703 -117614080 - RLTR13C2 LTR ERVK -141 842 493 5 905 7519 58 22 9 chr3 41985703 41986767 -117613016 + L1_Mm LINE L1 2884 3960 -1923 5 905 3225 55 3 0 chr3 41986770 41987154 -117612629 + IAPEY_LTR LTR ERVK 1 385 0 5 905 4983 185 35 4 chr3 41987154 41988172 -117611611 + IAPEY3-int LTR ERVK 1 1050 -6630 5 905 20739 46 4 6 chr3 41988172 41990886 -117608897 + IAPEy-int LTR ERVK 4804 7513 0 5 905 3143 47 2 50 chr3 41990886 41991290 -117608493 + IAPEY_LTR LTR ERVK 1 385 0 5 905 11643 70 2 0 chr3 41991290 41992887 -117606896 + L1_Mm LINE L1 3958 5558 -325 5 905 319 242 38 134 chr3 41992887 41992916 -117606867 + RLTR13D5 LTR ERVK 688 713 -142 5 905 8026 49 1 0 chr3 41992916 41993898 -117605885 + L1Md_F3 LINE L1 5588 6570 -14 5 905 768 191 39 26 chr3 41993898 41994054 -117605729 + RLTR13D5 LTR ERVK 866 1023 0 5 905 435 302 34 29 chr3 41994054 41994262 -117605521 + Lx6 LINE L1 7252 7460 0 5 905 494 380 80 48 chr3 41994369 41994720 -117605063 - MLT1G3 LTR MaLR -197 398 37 5 905 433 332 71 24 chr3 41995565 41995775 -117604008 + MER58A DNA MER1_type 2 221 -3 5 905 23 68 0 0 chr3 41996909 41996953 -117602830 + AT_rich Low_complexity Low_complexity 1 44 0 5 905 2035 194 14 0 chr3 41996959 41997315 -117602468 - Lx5 LINE L1 0 7050 6690 5 905 2595 162 7 2 chr3 41997317 41997776 -117602007 + L1_Mur2 LINE L1 5406 5866 -11 5 905 754 206 126 11 chr3 41997777 41997968 -117601815 + Lx5 LINE L1 6479 6691 -359 5 905 294 29 0 0 chr3 41999965 42000000 -117599783 + (TG)n Simple_repeat Simple_repeat 1 35 0 5 905 198 143 0 0 chr3 42000000 42000035 -117599748 + (TG)n Simple_repeat Simple_repeat 2 36 0 1 905 29 0 0 0 chr3 42000218 42000247 -117599536 + AT_rich Low_complexity Low_complexity 1 29 0 2 905 659 264 13 40 chr3 42000258 42000408 -117599375 - RSINE1 SINE B4 0 165 20 3 905 695 205 4 0 chr3 42000874 42001119 -117598664 + GA-rich Low_complexity Low_complexity 1 246 0 4 905 512 301 39 7 chr3 42001163 42001317 -117598466 - B3A SINE B2 -36 162 4 5 905 612 255 84 36 chr3 42001868 42002035 -117597748 - RLTR31_Mur LTR ERVK 0 553 379 6 905 430 264 32 65 chr3 42002145 42002331 -117597452 - RLTR17 LTR ERVK -397 295 116 7 905 517 319 57 9 chr3 42003531 42003743 -117596040 - MER58A DNA MER1_type -2 222 1 8 905 1093 308 53 49 chr3 42004293 42004701 -117595082 + MTE2a LTR MaLR 3 406 -13 9 905 814 290 128 63 chr3 42004817 42005295 -117594488 + MER67D LTR ERV1 1 509 -5 1 905 689 23 11 0 chr3 42007047 42007134 -117592649 + (GA)n Simple_repeat Simple_repeat 1 88 0 1 905 321 26 0 0 chr3 42007140 42007178 -117592605 + (GGA)n Simple_repeat Simple_repeat 3 40 0 1 905 260 351 67 9 chr3 42007878 42008088 -117591695 + L1M5 LINE L1 5489 5710 -414 1 905 193 254 56 56 chr3 42008352 42008423 -117591360 + L2c LINE L2 3096 3166 -221 1 905 2598 68 0 12 chr3 42011391 42011735 -117588048 + L1_Mus4 LINE L1 6297 6636 0 1 905 282 95 0 0 chr3 42011750 42011792 -117587991 + (CAAA)n Simple_repeat Simple_repeat 3 44 0 1 905 342 0 0 0 chr3 42011899 42011937 -117587846 + (TATG)n Simple_repeat Simple_repeat 2 39 0 1 905 756 102 22 22 chr3 42011950 42012130 -117587653 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 1 905 540 163 0 34 chr3 42012162 42012308 -117587475 + (TCTG)n Simple_repeat Simple_repeat 2 142 0 1 905 690 126 0 0 chr3 42012320 42012455 -117587328 + (TATG)n Simple_repeat Simple_repeat 2 136 0 2 905 852 92 0 0 chr3 42013514 42013655 -117586128 + (GA)n Simple_repeat Simple_repeat 2 142 0 2 905 199 415 37 29 chr3 42014456 42014699 -117585084 + L2 LINE L2 2708 2952 -467 2 905 315 0 0 0 chr3 42015150 42015185 -117584598 + (TG)n Simple_repeat Simple_repeat 2 36 0 2 905 637 286 0 8 chr3 42016886 42017020 -117582763 - B1F SINE Alu -2 147 15 2 905 251 241 19 108 chr3 42017688 42017846 -117581937 - RMER17A2 LTR ERVK -523 383 240 2 905 5774 70 51 1 chr3 42019988 42020757 -117579026 - L1_Mus1 LINE L1 -4 6563 5757 2 905 4371 91 3 3 chr3 42020757 42021410 -117578373 + L1_Mus1 LINE L1 5111 5764 -803 2 905 33 43 0 0 chr3 42022096 42022143 -117577640 + AT_rich Low_complexity Low_complexity 1 47 0 2 905 441 54 0 0 chr3 42023504 42023560 -117576223 + (TCTG)n Simple_repeat Simple_repeat 4 59 0 2 905 464 276 0 17 chr3 42026872 42026990 -117572793 + PB1D10 SINE Alu 1 116 -1 2 905 247 348 93 68 chr3 42027961 42028346 -117571437 - LTR85b LTR Gypsy? -133 651 257 3 905 323 293 34 8 chr3 42028531 42028648 -117571135 + CT-rich Low_complexity Low_complexity 4 123 0 3 905 367 262 101 113 chr3 42030024 42030192 -117569591 - B4A SINE B4 -22 270 105 3 905 315 282 166 49 chr3 42030207 42030267 -117569516 - HAL1-3A_ME LINE L1 -650 2208 2153 3 905 1329 73 0 0 chr3 42030267 42030445 -117569338 + (TTCTC)n Simple_repeat Simple_repeat 2 179 0 3 905 315 282 166 49 chr3 42030445 42030589 -117569194 - HAL1-3A_ME LINE L1 -706 2152 1980 3 905 2452 91 102 0 chr3 42033448 42033821 -117565962 - IAPLTR2a LTR ERVK 0 411 1 3 905 5922 32 3 20 chr3 42033823 42034580 -117565203 - IAPEz-int LTR ERVK -2 6479 5736 3 905 2155 54 0 0 chr3 42034579 42034857 -117564926 - IAPEz-int LTR ERVK -4845 1636 1359 3 905 3359 58 0 20 chr3 42034857 42035316 -117564467 - IAPEz-int LTR ERVK -5819 662 213 3 905 1041 105 0 0 chr3 42035284 42035436 -117564347 - IAPEz-int LTR ERVK -6162 319 168 3 905 248 309 0 0 chr3 42035436 42035491 -117564292 - RLTR27 LTR ERVK -34 275 221 3 905 871 128 25 109 chr3 42035491 42035693 -117564090 - IAPEz-int LTR ERVK -6288 193 9 3 905 2393 97 102 0 chr3 42035695 42036067 -117563716 - IAPLTR2a LTR ERVK -1 410 1 3 905 214 308 153 32 chr3 42036908 42037032 -117562751 - B1F2 SINE Alu -2 147 9 3 905 230 294 14 29 chr3 42037073 42037143 -117562640 - MLT1B LTR MaLR -31 359 291 3 905 1162 247 63 22 chr3 42039813 42040177 -117559606 - MTE2a LTR MaLR 0 379 1 3 905 526 28 28 0 chr3 42040598 42040670 -117559113 + (TC)n Simple_repeat Simple_repeat 2 75 0 4 905 201 39 0 0 chr3 42040670 42040695 -117559088 + (TG)n Simple_repeat Simple_repeat 1 26 0 4 905 499 348 132 20 chr3 42041462 42041764 -117558019 - LTR16E2 LTR ERVL -222 346 11 4 905 21 36 0 0 chr3 42042004 42042032 -117557751 + AT_rich Low_complexity Low_complexity 1 28 0 4 905 3678 28 12 2 chr3 42042173 42042605 -117557178 + RLTR10C LTR ERVK 1 436 0 4 905 571 287 53 47 chr3 42043084 42043274 -117556509 - B3A SINE B2 -5 193 3 4 905 199 368 8 64 chr3 42043315 42043440 -117556343 + MIR SINE MIR 143 260 -2 4 905 31 0 0 0 chr3 42045036 42045067 -117554716 + AT_rich Low_complexity Low_complexity 1 31 0 4 905 236 302 154 36 chr3 42045155 42045265 -117554518 - B4 SINE B4 -168 124 2 4 905 768 331 43 5 chr3 42045396 42045767 -117554016 - Lx8 LINE L1 -179 7294 6910 4 905 252 314 139 68 chr3 42045782 42046076 -117553707 - Looper DNA PiggyBac -162 1396 1082 5 905 1737 65 9 4 chr3 42046083 42046315 -117553468 + L1Md_F3 LINE L1 6338 6570 -14 5 905 1691 280 72 25 chr3 42046385 42047027 -117552756 - Looper DNA PiggyBac -629 929 258 5 905 31 76 0 0 chr3 42047075 42047141 -117552642 + AT_rich Low_complexity Low_complexity 1 66 0 5 905 279 344 71 44 chr3 42047817 42048021 -117551762 + MIR SINE MIR 32 241 -21 5 905 3614 166 26 20 chr3 42048021 42048684 -117551099 + Lx2B LINE L1 6326 6992 -8 5 905 279 344 71 44 chr3 42048684 42048704 -117551079 + MIR SINE MIR 242 262 0 5 905 759 204 26 8 chr3 42048721 42048886 -117550897 + B3 SINE B2 4 177 -18 5 905 1205 55 0 0 chr3 42048886 42049031 -117550752 + B1_Mus1 SINE Alu 4 148 0 5 905 578 208 101 34 chr3 42049031 42049044 -117550739 + B2_Mm2 SINE B2 178 193 -2 5 905 944 281 120 11 chr3 42049558 42049938 -117549845 + L1MA6 LINE L1 5387 5825 -475 5 905 369 0 0 0 chr3 42049938 42049979 -117549804 + (CA)n Simple_repeat Simple_repeat 2 42 0 5 905 944 281 120 11 chr3 42049979 42050225 -117549558 + L1MA6 LINE L1 5826 6081 -219 5 905 941 289 100 14 chr3 42050266 42050627 -117549156 + RCHARR1 DNA MER1_type 73 464 -510 5 905 703 241 77 0 chr3 42050638 42050833 -117548950 + RCHARR1 DNA MER1_type 763 972 -2 5 905 22 0 0 0 chr3 42050836 42050858 -117548925 + AT_rich Low_complexity Low_complexity 1 22 0 6 905 237 59 38 38 chr3 42050869 42050922 -117548861 + (TTTTTA)n Simple_repeat Simple_repeat 4 56 0 6 905 4486 36 0 0 chr3 42050930 42051459 -117548324 - L1Md_T LINE L1 0 6582 6054 6 905 4314 57 1 8 chr3 42051459 42052408 -117547375 + L1Md_Gf LINE L1 598 1643 -4243 6 905 236 302 83 16 chr3 42052415 42052607 -117547176 + L1MA6 LINE L1 6074 6278 -22 5 905 1141 74 0 7 chr3 42052655 42052804 -117546979 + B1_Mus1 SINE Alu 1 148 0 6 905 453 19 0 0 chr3 42053290 42053344 -117546439 + (TG)n Simple_repeat Simple_repeat 1 54 0 6 905 4870 112 15 1 chr3 42054444 42055161 -117544622 - Lx3_Mus LINE L1 -9 7000 6274 6 905 847 318 79 11 chr3 42055348 42055615 -117544168 + B4 SINE B4 8 292 0 6 905 288 77 0 0 chr3 42055702 42055741 -117544042 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 6 905 405 0 0 0 chr3 42056257 42056302 -117543481 + (CA)n Simple_repeat Simple_repeat 2 46 0 6 905 289 258 68 55 chr3 42056916 42056952 -117542831 - ID4_ SINE ID -46 106 24 7 905 289 167 62 62 chr3 42056952 42057016 -117542767 - tRNA-Ala-GCY_ tRNA tRNA -9 66 3 7 905 238 226 50 28 chr3 42057356 42057497 -117542286 + (TCTA)n Simple_repeat Simple_repeat 1 144 0 7 905 673 175 33 26 chr3 42057560 42057833 -117541950 + (TCTA)n Simple_repeat Simple_repeat 1 274 0 7 905 522 0 0 0 chr3 42057876 42057934 -117541849 + (TCCA)n Simple_repeat Simple_repeat 4 61 0 7 905 271 340 99 41 chr3 42058212 42058433 -117541350 - MIR SINE MIR -28 234 1 7 905 3799 62 2 6 chr3 42061319 42061808 -117537975 - L1_Mus2 LINE L1 -1 6565 6079 7 905 3257 58 10 0 chr3 42061809 42062224 -117537559 + L1_Mus2 LINE L1 5650 6068 -498 7 905 4883 258 49 67 chr3 42062622 42064092 -117535691 - Lx5 LINE L1 -3 7047 5596 7 905 2279 82 0 3 chr3 42064092 42064400 -117535383 + L1_Mus1 LINE L1 6261 6567 0 7 905 1868 269 84 10 chr3 42064400 42064419 -117535364 - Lx5 LINE L1 -291 5595 5543 7 905 243 0 0 0 chr3 42064419 42064446 -117535337 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 7 905 1868 269 84 10 chr3 42064446 42064742 -117535041 - Lx5 LINE L1 -344 5542 5248 7 905 11171 173 37 18 chr3 42064771 42066172 -117533611 - Lx2B LINE L1 -110 6887 5512 7 905 6930 64 16 5 chr3 42066172 42067055 -117532728 + RLTR13B1 LTR ERVK 1 893 0 8 905 11171 162 10 17 chr3 42067055 42068715 -117531068 - Lx2B LINE L1 -366 5511 3860 7 905 952 219 44 0 chr3 42068711 42068962 -117530821 - Lx2B LINE L1 -2542 3335 3074 7 905 1161 219 73 79 chr3 42068953 42069468 -117530315 - Lx2B LINE L1 -4501 1376 885 7 905 1839 179 45 26 chr3 42070267 42070481 -117529302 + ORR1B1 LTR MaLR 1 207 -187 8 905 992 115 0 103 chr3 42070481 42070665 -117529118 + L1_Mus2 LINE L1 6400 6564 -2 8 905 1839 179 45 26 chr3 42070665 42070829 -117528954 + ORR1B1 LTR MaLR 208 385 -9 8 905 28 61 0 0 chr3 42070879 42070928 -117528855 + AT_rich Low_complexity Low_complexity 1 49 0 8 905 473 357 13 0 chr3 42071264 42071418 -117528365 - RSINE1 SINE B4 -8 157 2 8 905 1066 138 0 0 chr3 42071862 42072043 -117527740 - Lx3_Mus LINE L1 -592 5294 5114 8 905 9705 87 3 2 chr3 42072042 42072636 -117527147 + Lx3_Mus LINE L1 5341 5919 -1090 8 905 210 37 0 0 chr3 42072636 42072663 -117527120 + (CAAAC)n Simple_repeat Simple_repeat 2 28 0 8 905 555 126 0 0 chr3 42072670 42072765 -117527018 + (CAG)n Simple_repeat Simple_repeat 1 95 0 8 905 9705 89 21 20 chr3 42072765 42073826 -117525957 + Lx3_Mus LINE L1 5920 7004 -5 8 905 527 275 88 17 chr3 42073874 42074055 -117525728 + MLT2B4 LTR ERVL 1 194 -362 8 906 1599 335 34 11 chr3 42074324 42074943 -117524840 + Lx8 LINE L1 6549 7181 -292 8 906 250 311 0 0 chr3 42075028 42075089 -117524694 - Lx8 LINE L1 -744 6729 6669 9 906 929 282 52 24 chr3 42075434 42075725 -117524058 + Lx8 LINE L1 7166 7464 -9 8 906 1025 295 106 24 chr3 42075836 42076693 -117523090 - L1MC3 LINE L1 0 7785 6825 9 906 7911 55 6 1 chr3 42076704 42077711 -117522072 + L1Md_F3 LINE L1 4574 5585 -298 9 906 8258 36 1 3 chr3 42077712 42078710 -117521073 + L1Md_F3 LINE L1 5587 6582 -2 9 906 500 290 175 17 chr3 42078848 42079305 -117520478 + L1M3 LINE L1 3857 4396 -1744 9 906 341 347 23 69 chr3 42079322 42079452 -117520331 + RSINE1 SINE B4 13 136 -29 9 906 474 108 0 0 chr3 42079466 42079540 -117520243 + (CA)n Simple_repeat Simple_repeat 1 74 0 9 906 574 255 62 24 chr3 42079557 42079766 -117520017 + L1_Mur3 LINE L1 4392 4608 -1272 9 906 315 0 0 0 chr3 42080019 42080054 -117519729 + (T)n Simple_repeat Simple_repeat 1 35 0 9 906 330 329 110 35 chr3 42080382 42080609 -117519174 - MIRb SINE MIR -3 265 22 9 906 817 47 39 0 chr3 42080625 42080752 -117519031 + (TCCA)n Simple_repeat Simple_repeat 4 135 0 9 906 451 244 85 24 chr3 42081329 42081493 -117518290 + MER53 DNA hAT 15 188 -5 1 906 552 262 24 0 chr3 42081646 42081772 -117518011 + MER94 DNA AcHobo 1 129 -5 1 906 492 59 0 0 chr3 42081930 42081998 -117517785 + (CA)n Simple_repeat Simple_repeat 2 69 0 1 906 423 0 0 0 chr3 42082169 42082216 -117517567 + (TCTA)n Simple_repeat Simple_repeat 4 50 0 1 906 486 0 0 0 chr3 42082639 42082693 -117517090 + (GA)n Simple_repeat Simple_repeat 1 54 0 1 906 5642 69 18 18 chr3 42082704 42083468 -117516315 - L1Md_F2 LINE L1 -9 6573 5810 1 906 5805 64 1 16 chr3 42083498 42084265 -117515518 - L1Md_F2 LINE L1 -12 6570 5815 1 906 637 366 73 17 chr3 42085151 42085509 -117514274 - MTB_Mm LTR MaLR -25 554 177 1 906 1317 200 107 8 chr3 42085488 42085791 -117513992 - MTB_Mm LTR MaLR -114 293 1 1 906 191 272 152 0 chr3 42086553 42086645 -117513138 - L2 LINE L2 -1076 2343 2238 1 906 978 119 0 0 chr3 42087672 42087959 -117511824 + (GA)n Simple_repeat Simple_repeat 1 287 0 1 906 506 262 65 58 chr3 42089734 42089888 -117509895 - RSINE1 SINE B4 0 165 11 1 906 235 291 28 55 chr3 42090978 42091087 -117508696 - Lx7 LINE L1 -13 7683 7578 1 906 405 0 0 0 chr3 42091100 42091145 -117508638 + (CAAAA)n Simple_repeat Simple_repeat 2 46 0 1 906 830 294 90 25 chr3 42091326 42091682 -117508101 - MTEa LTR MaLR 0 379 1 1 906 40 49 0 0 chr3 42091982 42092043 -117507740 + AT_rich Low_complexity Low_complexity 1 61 0 1 906 312 27 0 0 chr3 42092351 42092388 -117507395 + (TATG)n Simple_repeat Simple_repeat 3 39 0 1 906 221 219 0 0 chr3 42092392 42092433 -117507350 + (CCTA)n Simple_repeat Simple_repeat 3 43 0 1 906 811 252 118 33 chr3 42092433 42092816 -117506967 - MT2A LTR ERVL -70 463 1 1 906 28 38 0 19 chr3 42093037 42093061 -117506722 + AT_rich Low_complexity Low_complexity 1 24 0 1 906 1162 82 0 0 chr3 42093061 42093208 -117506575 + B1_Mus2 SINE Alu 1 147 0 1 906 28 38 0 19 chr3 42093208 42093236 -117506547 + AT_rich Low_complexity Low_complexity 1 28 0 1 906 342 302 82 11 chr3 42093245 42093429 -117506354 - L1MA6 LINE L1 -38 6262 6066 1 906 333 138 12 12 chr3 42093832 42093913 -117505870 + Lx3C LINE L1 6895 6975 -1 1 906 1304 52 12 0 chr3 42093920 42094092 -117505691 + (GAAA)n Simple_repeat Simple_repeat 3 176 0 1 906 34 0 0 0 chr3 42094643 42094677 -117505106 + AT_rich Low_complexity Low_complexity 1 34 0 1 906 879 146 12 0 chr3 42094679 42094843 -117504940 - L1_Mus3 LINE L1 -3 6635 6470 1 906 930 192 0 23 chr3 42094848 42095024 -117504759 - Lx5 LINE L1 -143 6907 6736 1 906 4945 123 11 5 chr3 42095051 42095800 -117503983 - Lx2 LINE L1 -1 6996 6244 1 906 22 35 0 0 chr3 42096001 42096030 -117503753 + AT_rich Low_complexity Low_complexity 1 29 0 1 906 638 279 58 16 chr3 42096113 42096302 -117503481 + B3 SINE B2 20 216 0 1 906 273 119 0 0 chr3 42096309 42096351 -117503432 + (TAGA)n Simple_repeat Simple_repeat 4 45 0 1 906 207 211 53 0 chr3 42096528 42096604 -117503179 + (TTATA)n Simple_repeat Simple_repeat 1 80 0 1 906 213 94 0 0 chr3 42096629 42096661 -117503122 + (TA)n Simple_repeat Simple_repeat 1 32 0 1 906 207 0 0 0 chr3 42097817 42097840 -117501943 + (CAA)n Simple_repeat Simple_repeat 2 24 0 1 906 263 307 40 0 chr3 42098100 42098175 -117501608 + ID2 SINE ID 2 79 -4 1 906 598 90 54 14 chr3 42099215 42099362 -117500421 + (TCTA)n Simple_repeat Simple_repeat 2 154 0 1 906 1368 144 26 0 chr3 42099388 42099617 -117500166 - Lx2 LINE L1 0 6997 6763 1 906 2108 93 38 3 chr3 42099601 42099893 -117499890 - Lx2 LINE L1 -349 6648 6347 1 906 338 332 99 14 chr3 42099947 42100158 -117499625 - L1MC4a LINE L1 -1983 5899 5671 1 906 345 100 0 0 chr3 42100304 42100354 -117499429 + (TTTA)n Simple_repeat Simple_repeat 2 51 0 1 906 8483 24 2 5 chr3 42100781 42102358 -117497425 - L1Md_T LINE L1 0 6582 5008 1 906 1998 127 45 42 chr3 42102502 42102880 -117496903 - Lx LINE L1 -2 6652 6274 1 906 1067 107 0 0 chr3 42102880 42103029 -117496754 + B2_Mm2 SINE B2 15 163 -32 1 906 465 352 34 17 chr3 42103084 42103437 -117496346 + ORR1E LTR MaLR 1 359 0 1 906 238 314 49 35 chr3 42103451 42103593 -117496190 - HAL1b LINE L1 -809 1200 1057 1 906 25 31 0 0 chr3 42103874 42103906 -117495877 + AT_rich Low_complexity Low_complexity 1 32 0 1 906 260 191 0 0 chr3 42103924 42103971 -117495812 - B3A SINE B2 -148 50 4 1 906 503 137 21 0 chr3 42104047 42104142 -117495641 + (TAAA)n Simple_repeat Simple_repeat 2 98 0 1 906 254 277 23 35 chr3 42104225 42104311 -117495472 + MER58C DNA MER1_type 101 185 -30 1 906 943 250 47 47 chr3 42104317 42104615 -117495168 - Lx6 LINE L1 -9 7451 7154 1 906 651 71 0 0 chr3 42104826 42104924 -117494859 + (TG)n Simple_repeat Simple_repeat 2 99 0 1 906 225 0 0 0 chr3 42105370 42105395 -117494388 + (T)n Simple_repeat Simple_repeat 1 25 0 1 906 364 306 40 24 chr3 42107351 42107475 -117492308 + B3A SINE B2 1 126 -72 1 906 4632 131 52 1 chr3 42107663 42108430 -117491353 + Lx2 LINE L1 6192 6997 0 1 906 230 73 0 24 chr3 42108856 42108898 -117490885 + (CAAA)n Simple_repeat Simple_repeat 4 44 0 1 906 549 269 23 9 chr3 42109199 42109353 -117490430 - Lx9 LINE L1 -1098 6546 6289 1 906 447 165 25 0 chr3 42109431 42109510 -117490273 + Lx9 LINE L1 6972 7052 -592 1 906 1180 40 0 20 chr3 42109577 42109748 -117490035 + L1Md_F2 LINE L1 6238 6394 -188 1 906 260 250 21 32 chr3 42109734 42109829 -117489954 + L1_Mur1 LINE L1 3502 3595 -2291 1 906 1358 64 0 16 chr3 42109844 42110034 -117489749 + L1Md_F2 LINE L1 6384 6570 -12 1 906 1679 209 84 54 chr3 42110041 42110285 -117489498 - RMER13B LTR ERVK -183 725 449 1 906 1463 96 0 39 chr3 42110285 42110514 -117489269 + L1_Mus1 LINE L1 6348 6567 0 1 906 1679 209 84 54 chr3 42110514 42110710 -117489073 - RMER13B LTR ERVK -460 448 272 1 906 1720 202 20 44 chr3 42110729 42111179 -117488604 - RMER17B LTR ERVK -519 439 1 1 906 1236 202 144 6 chr3 42111179 42111498 -117488285 + Lx9 LINE L1 7049 7411 -233 1 906 312 185 23 58 chr3 42111532 42111618 -117488165 - L1MC4a LINE L1 -1203 6679 6597 1 906 312 276 19 9 chr3 42111648 42111754 -117488029 + Lx9 LINE L1 7484 7590 -54 1 906 3352 91 91 2 chr3 42111836 42112331 -117487452 - L1_Mus4 LINE L1 -1 6635 6097 1 906 2986 176 5 132 chr3 42112331 42112591 -117487192 + L1_Mm LINE L1 4394 4638 -1245 1 906 189 0 0 0 chr3 42112591 42112612 -117487171 + (CAAAA)n Simple_repeat Simple_repeat 4 24 0 1 906 2986 176 5 132 chr3 42112612 42113125 -117486658 + L1_Mm LINE L1 4639 5069 -814 1 906 323 319 111 58 chr3 42114224 42114450 -117485333 + MIRc SINE MIR 4 241 -27 1 906 1045 329 84 11 chr3 42114830 42115199 -117484584 + MLT2B1 LTR ERVL 1 396 -124 1 906 336 305 19 19 chr3 42115304 42115325 -117484458 - B4A SINE B4 0 292 272 1 906 477 0 0 0 chr3 42115325 42115378 -117484405 + (GA)n Simple_repeat Simple_repeat 1 53 0 1 906 288 0 0 0 chr3 42115378 42115409 -117484374 + (TG)n Simple_repeat Simple_repeat 2 33 0 1 906 336 305 19 19 chr3 42115409 42115493 -117484290 - B4A SINE B4 -21 271 187 1 906 1902 202 34 5 chr3 42115534 42115912 -117483871 + Lx9 LINE L1 6564 6952 -692 1 906 392 0 21 0 chr3 42116712 42116760 -117483023 + (TCTA)n Simple_repeat Simple_repeat 4 52 0 1 906 417 360 22 0 chr3 42116843 42116982 -117482801 + ID_B1 SINE B4 4 145 -79 1 906 234 0 0 0 chr3 42117686 42117712 -117482071 + (CAAA)n Simple_repeat Simple_repeat 4 29 0 1 906 1092 112 0 18 chr3 42119715 42119879 -117479904 + B2_Mm2 SINE B2 2 162 -33 1 906 207 0 0 0 chr3 42119879 42119902 -117479881 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 906 982 140 125 39 chr3 42119919 42120127 -117479656 - URR1A DNA MER1_type 0 226 1 1 906 649 354 37 26 chr3 42120144 42120495 -117479288 + L2 LINE L2 2344 2698 -721 1 906 201 268 105 76 chr3 42121649 42121754 -117478029 + MIRb SINE MIR 123 230 -38 1 906 252 59 0 0 chr3 42122131 42122165 -117477618 + (T)n Simple_repeat Simple_repeat 1 34 0 1 906 38017 30 1 1 chr3 42122175 42129040 -117470743 - L1Md_T LINE L1 0 6585 1 1 906 365 345 63 80 chr3 42129995 42130282 -117469501 + ORR1E LTR MaLR 32 313 -46 1 906 1854 256 72 6 chr3 42130282 42130782 -117469001 + Lx6 LINE L1 6920 7452 -8 1 906 825 231 116 7 chr3 42131144 42131436 -117468347 - Lx9 LINE L1 0 7644 7321 1 906 313 269 0 21 chr3 42131460 42131555 -117468228 - Lx8 LINE L1 -1 7472 7380 1 906 393 86 0 0 chr3 42132126 42132184 -117467599 + (TATG)n Simple_repeat Simple_repeat 3 60 0 1 906 238 327 15 137 chr3 42132412 42132543 -117467240 + B4A SINE B4 50 164 -128 1 906 603 39 0 0 chr3 42132612 42132690 -117467093 + (CA)n Simple_repeat Simple_repeat 2 79 0 1 906 354 338 55 87 chr3 42132842 42133189 -117466594 - L2 LINE L2 -826 2593 2258 1 906 468 0 0 0 chr3 42133408 42133460 -117466323 + (TG)n Simple_repeat Simple_repeat 2 53 0 1 906 539 287 149 16 chr3 42134242 42134490 -117465293 - B4A SINE B4 -8 284 4 1 906 378 0 0 0 chr3 42134813 42134855 -117464928 + (TAA)n Simple_repeat Simple_repeat 2 43 0 1 906 273 256 28 99 chr3 42135631 42135813 -117463970 - Lx7 LINE L1 -13 7683 7515 1 906 372 193 0 0 chr3 42135820 42135929 -117463854 + (CA)n Simple_repeat Simple_repeat 1 109 0 1 906 403 169 42 0 chr3 42135929 42136000 -117463783 + HAL1-3A_ME LINE L1 1976 2049 -809 1 906 207 0 0 0 chr3 42136778 42136801 -117462982 + (TC)n Simple_repeat Simple_repeat 2 24 0 1 906 411 21 0 0 chr3 42136801 42136848 -117462935 + (TA)n Simple_repeat Simple_repeat 1 48 0 1 906 5372 104 11 3 chr3 42136910 42137692 -117462091 + L1_Mus3 LINE L1 5846 6634 -4 1 906 561 30 0 0 chr3 42137711 42137778 -117462005 + (CA)n Simple_repeat Simple_repeat 2 68 0 1 906 216 0 0 0 chr3 42137778 42137801 -117461982 + (TA)n Simple_repeat Simple_repeat 2 25 0 2 906 315 0 0 0 chr3 42137801 42137836 -117461947 + (GA)n Simple_repeat Simple_repeat 1 35 0 2 906 495 319 143 23 chr3 42138062 42138328 -117461455 + MER58B DNA MER1_type 10 307 -34 2 906 1038 297 84 40 chr3 42138566 42138969 -117460814 + Lx8 LINE L1 6779 7199 -274 2 906 228 290 95 21 chr3 42139247 42139342 -117460441 - MTEb LTR MaLR -28 351 250 2 906 459 35 0 0 chr3 42140702 42140759 -117459024 + (TA)n Simple_repeat Simple_repeat 1 57 0 2 906 308 368 9 36 chr3 42141620 42141730 -117458053 + RSINE1 SINE B4 44 150 -15 2 906 5319 61 3 14 chr3 42141962 42142657 -117457126 - L1Md_F2 LINE L1 0 6582 5896 2 906 5047 58 2 3 chr3 42142657 42143297 -117456486 + L1Md_F2 LINE L1 5245 5883 0 2 906 10049 192 42 48 chr3 42144171 42144931 -117454852 + Lx6 LINE L1 1209 2021 -3859 2 906 342 0 0 0 chr3 42144931 42144969 -117454814 + (CA)n Simple_repeat Simple_repeat 2 39 0 2 906 10049 190 43 49 chr3 42144969 42146784 -117452999 + Lx6 LINE L1 2022 3768 -2112 2 906 2816 207 43 65 chr3 42146784 42147441 -117452342 - RLTR26 LTR ERVK 0 642 1 2 906 2599 187 10 2 chr3 42147441 42147935 -117451848 + Lx6 LINE L1 3763 4260 -1620 2 906 650 202 77 77 chr3 42147937 42148119 -117451664 + RMER19B LTR ERVK 1 182 -429 2 906 1233 164 48 18 chr3 42148134 42148399 -117451384 - Lx2B LINE L1 -15 6985 6769 2 906 1352 278 63 45 chr3 42148399 42149011 -117450772 + RMER19B LTR ERVK 138 902 0 2 906 5704 231 28 80 chr3 42149011 42149182 -117450601 + Lx6 LINE L1 4256 4420 -1457 2 906 216 0 0 0 chr3 42149182 42149206 -117450577 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2 906 5704 246 60 48 chr3 42149206 42152016 -117447767 + Lx6 LINE L1 4421 7278 -182 2 906 413 76 15 0 chr3 42152041 42152107 -117447676 + (TCCC)n Simple_repeat Simple_repeat 3 69 0 2 906 326 301 35 7 chr3 42152126 42152270 -117447513 + Lx6 LINE L1 7293 7440 -20 2 906 255 283 93 35 chr3 42152401 42152573 -117447210 + Lx8 LINE L1 7292 7473 0 2 906 293 128 0 0 chr3 42152588 42152635 -117447148 + L1MA4 LINE L1 6038 6084 -216 2 906 444 230 11 0 chr3 42152696 42152783 -117447000 - Ricksha DNA MuDR -363 2883 2796 2 906 452 299 81 31 chr3 42152924 42153245 -117446538 - Ricksha DNA MuDR -636 2610 2274 2 906 411 267 27 14 chr3 42153755 42153903 -117445880 - Ricksha DNA MuDR -3052 194 45 2 906 1026 47 0 0 chr3 42154583 42154711 -117445072 + (TCTA)n Simple_repeat Simple_repeat 2 129 0 2 906 605 123 9 0 chr3 42155919 42156025 -117443758 + (TA)n Simple_repeat Simple_repeat 1 107 0 2 906 234 0 0 0 chr3 42156025 42156050 -117443733 + (GA)n Simple_repeat Simple_repeat 2 27 0 2 906 228 135 0 0 chr3 42156158 42156195 -117443588 + (T)n Simple_repeat Simple_repeat 1 37 0 2 906 21 36 0 0 chr3 42156953 42156981 -117442802 + AT_rich Low_complexity Low_complexity 1 28 0 2 906 333 0 0 0 chr3 42157490 42157527 -117442256 + (TG)n Simple_repeat Simple_repeat 2 38 0 2 906 350 379 59 13 chr3 42157559 42157864 -117441919 - Lx8 LINE L1 -201 7272 6954 2 906 615 62 0 0 chr3 42157869 42157949 -117441834 + (CA)n Simple_repeat Simple_repeat 2 81 0 2 906 1083 223 60 52 chr3 42158185 42158634 -117441149 - Lx2B LINE L1 -11 6986 6539 2 906 270 333 18 37 chr3 42159029 42159138 -117440645 - L2 LINE L2 -1025 2394 2288 2 906 1949 248 93 23 chr3 42159316 42159840 -117439943 - Lx9 LINE L1 -724 6920 6360 2 906 235 308 13 0 chr3 42159852 42159930 -117439853 - Lx9 LINE L1 -1260 6384 6306 2 906 1464 255 49 0 chr3 42159965 42160330 -117439453 + Lx9 LINE L1 7078 7460 -184 2 906 585 0 0 0 chr3 42160352 42160417 -117439366 + (GGA)n Simple_repeat Simple_repeat 1 65 0 2 906 344 307 17 28 chr3 42161141 42161322 -117438461 + RCHARR1 DNA MER1_type 309 487 -487 2 906 371 56 19 0 chr3 42161897 42161951 -117437832 + (GGA)n Simple_repeat Simple_repeat 3 57 0 2 906 327 384 46 36 chr3 42162223 42162465 -117437318 - B4 SINE B4 -11 281 60 2 906 279 301 72 46 chr3 42162563 42162758 -117437025 + MER63D DNA AcHobo 3 202 -859 2 906 501 32 0 0 chr3 42167043 42167106 -117432677 + (TG)n Simple_repeat Simple_repeat 2 64 0 2 906 504 361 34 49 chr3 42167160 42167425 -117432358 - B4A SINE B4 -29 263 3 2 906 180 125 0 0 chr3 42167854 42167886 -117431897 + (CAAAAA)n Simple_repeat Simple_repeat 4 35 0 2 906 346 262 12 0 chr3 42170341 42170421 -117429362 - Lx8 LINE L1 -224 7249 7169 2 906 372 309 102 50 chr3 42171110 42171754 -117428029 - L1ME1 LINE L1 -190 5989 5312 2 906 21 0 0 0 chr3 42171793 42171814 -117427969 + AT_rich Low_complexity Low_complexity 1 21 0 2 906 260 229 33 33 chr3 42171981 42172103 -117427680 + (TA)n Simple_repeat Simple_repeat 2 123 0 2 906 1109 79 0 0 chr3 42172213 42172353 -117427430 + B1_Mus1 SINE Alu 3 142 -6 2 906 22118 107 28 9 chr3 42172397 42176589 -117423194 + L1_Mur1 LINE L1 242 4523 -1363 2 906 391 146 23 68 chr3 42176587 42176675 -117423108 + L1_Mus1 LINE L1 6329 6412 -155 2 906 329 127 50 12 chr3 42176801 42176881 -117422902 + Lx9 LINE L1 7498 7580 -64 2 906 5640 105 28 46 chr3 42178365 42179284 -117420499 + L1_Mus4 LINE L1 5734 6636 0 2 906 321 26 0 0 chr3 42179527 42179565 -117420218 + (TA)n Simple_repeat Simple_repeat 2 39 0 2 906 269 303 24 8 chr3 42179585 42179708 -117420075 + (CATATA)n Simple_repeat Simple_repeat 5 129 0 2 906 244 268 73 0 chr3 42180258 42180352 -117419431 + MIR SINE MIR 57 155 -107 2 906 279 0 0 0 chr3 42181409 42181440 -117418343 + (CA)n Simple_repeat Simple_repeat 2 32 0 2 906 1608 177 36 51 chr3 42182696 42183030 -117416753 + ORR1A4 LTR MaLR 1 329 0 2 906 401 326 77 43 chr3 42183277 42183626 -117416157 - MLT1A0 LTR MaLR 0 365 5 2 906 849 177 20 0 chr3 42183823 42183970 -117415813 - B1_Mur4 SINE Alu 0 150 1 2 906 531 0 0 0 chr3 42184181 42184240 -117415543 + (TC)n Simple_repeat Simple_repeat 2 60 0 2 906 387 0 0 0 chr3 42184246 42184289 -117415494 + (CA)n Simple_repeat Simple_repeat 2 44 0 2 906 760 284 89 24 chr3 42184307 42184690 -117415093 - L1MA4 LINE L1 -378 5922 5515 2 906 516 382 93 26 chr3 42184927 42185239 -117414544 + MLT1A0 LTR MaLR 21 353 -12 2 906 655 273 39 29 chr3 42185307 42185511 -117414272 - B3 SINE B2 -8 208 3 2 906 635 286 29 17 chr3 42185591 42185765 -117414018 + ID_B1 SINE B4 39 214 -10 2 906 414 220 143 8 chr3 42186420 42186539 -117413244 + MER58C DNA MER1_type 81 215 0 2 906 336 143 0 0 chr3 42186860 42186916 -117412867 + (TA)n Simple_repeat Simple_repeat 2 57 0 2 906 450 0 0 0 chr3 42186918 42186968 -117412815 + (CA)n Simple_repeat Simple_repeat 2 51 0 2 906 1462 256 71 13 chr3 42187494 42187890 -117411893 - MTD LTR MaLR 0 419 1 2 906 290 324 11 49 chr3 42188150 42188335 -117411448 + CT-rich Low_complexity Low_complexity 1 178 0 2 906 559 274 116 33 chr3 42188470 42188745 -117411038 + RLTR18B LTR ERVK 1 298 -214 2 906 774 295 71 74 chr3 42188738 42189152 -117410631 + RLTR18B LTR ERVK 192 612 -4 2 906 725 291 131 55 chr3 42189227 42189678 -117410105 + MER31A LTR ERV1 1 485 0 2 906 902 320 80 6 chr3 42189697 42190046 -117409737 - MTEb LTR MaLR 0 379 5 2 906 1918 170 11 58 chr3 42190641 42190695 -117409088 - ORR1B2 LTR MaLR 0 367 315 2 906 243 0 0 0 chr3 42190695 42190722 -117409061 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2 906 982 95 7 0 chr3 42190722 42190859 -117408924 - B1_Mus1 SINE Alu -9 139 2 2 906 1918 170 11 58 chr3 42190859 42191184 -117408599 - ORR1B2 LTR MaLR -53 314 6 2 906 222 312 32 85 chr3 42191315 42191471 -117408312 + L2c LINE L2 3208 3355 -32 2 906 2059 170 42 3 chr3 42191471 42191848 -117407935 - ORR1B1 LTR MaLR -2 392 1 2 906 222 312 32 85 chr3 42191848 42191880 -117407903 + L2c LINE L2 3356 3386 -1 2 906 23 33 0 0 chr3 42191996 42192026 -117407757 + AT_rich Low_complexity Low_complexity 1 30 0 2 906 5639 43 0 0 chr3 42192032 42192708 -117407075 + L1Md_F2 LINE L1 5893 6568 -14 2 906 539 362 57 67 chr3 42192823 42193243 -117406540 - Lx8 LINE L1 -96 7377 6962 2 906 2271 236 178 22 chr3 42193264 42194038 -117405745 - RMER19B LTR ERVK -7 895 1 2 906 1326 306 63 71 chr3 42194045 42194762 -117405021 - Lx8 LINE L1 -550 6923 6213 2 906 773 289 57 23 chr3 42194843 42195194 -117404589 + Lx7 LINE L1 5503 5897 -1799 2 906 399 389 19 37 chr3 42196562 42196778 -117403005 + B4A SINE B4 73 284 -8 2 906 351 0 0 0 chr3 42196811 42196850 -117402933 + (CA)n Simple_repeat Simple_repeat 2 40 0 2 906 28 48 0 0 chr3 42197051 42197093 -117402690 + AT_rich Low_complexity Low_complexity 1 42 0 2 906 1372 339 44 67 chr3 42197236 42197414 -117402369 - Lx8 LINE L1 -228 7245 7091 2 906 1078 91 14 0 chr3 42197414 42197557 -117402226 - B1_Mus1 SINE Alu 0 148 4 2 906 1372 339 44 67 chr3 42197557 42198175 -117401608 - Lx8 LINE L1 -383 7090 6467 2 906 467 274 154 42 chr3 42198299 42198801 -117400982 - Charlie2a DNA MER1_type -1038 1823 1471 2 906 198 0 0 0 chr3 42199184 42199206 -117400577 + (TTTTTG)n Simple_repeat Simple_repeat 2 23 0 2 906 1257 281 145 8 chr3 42199206 42199251 -117400532 + MTD LTR MaLR 12 86 -333 2 906 5365 74 4 18 chr3 42199251 42199983 -117399800 + L1Md_F2 LINE L1 5856 6577 -5 2 906 1257 281 145 8 chr3 42199983 42200296 -117399487 + MTD LTR MaLR 87 419 0 2 906 1308 295 58 46 chr3 42200298 42200795 -117398988 + MTD-int LTR MaLR 3 505 -753 2 906 545 64 13 0 chr3 42200920 42200998 -117398785 + (TA)n Simple_repeat Simple_repeat 2 80 0 2 906 291 282 14 40 chr3 42201186 42201334 -117398449 + L1MD LINE L1 5176 5319 -827 2 906 26 0 0 0 chr3 42201734 42201760 -117398023 + AT_rich Low_complexity Low_complexity 1 26 0 2 906 303 205 106 8 chr3 42202278 42202401 -117397382 + Lx9 LINE L1 7510 7644 0 2 906 5125 39 0 0 chr3 42202465 42203099 -117396684 + L1_Mm LINE L1 3846 4479 -1404 2 906 23 0 0 0 chr3 42203541 42203564 -117396219 + AT_rich Low_complexity Low_complexity 1 23 0 2 906 1101 247 88 18 chr3 42203750 42204137 -117395646 + L1_Mur3 LINE L1 4838 5251 -629 2 906 1389 53 0 0 chr3 42204183 42204353 -117395430 - L1_Mus1 LINE L1 -411 6156 5987 2 906 805 76 0 0 chr3 42204353 42204472 -117395311 + L1_Mus1 LINE L1 6448 6566 -1 2 907 477 0 0 0 chr3 42206037 42206090 -117393693 + (TA)n Simple_repeat Simple_repeat 2 54 0 2 907 241 263 0 0 chr3 42206096 42206153 -117393630 - L2a LINE L2 0 3426 3370 2 907 3990 63 2 15 chr3 42207098 42207630 -117392153 - L1Md_F2 LINE L1 0 6582 6058 2 907 22 35 0 0 chr3 42209236 42209265 -117390518 + AT_rich Low_complexity Low_complexity 1 29 0 3 907 207 0 0 0 chr3 42209330 42209353 -117390430 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 3 907 3682 82 32 2 chr3 42209374 42209875 -117389908 - L1_Mus2 LINE L1 0 6566 6051 3 907 3473 45 17 100 chr3 42210732 42211250 -117388533 - IAPLTR2_Mm LTR ERVK 0 475 1 3 907 378 314 10 63 chr3 42211472 42211679 -117388104 - B3A SINE B2 -1 197 2 3 907 190 344 46 46 chr3 42214551 42214682 -117385101 + L2 LINE L2 1996 2126 -1293 3 907 617 248 130 0 chr3 42215157 42215318 -117384465 - B3 SINE B2 -33 183 2 3 907 472 94 0 0 chr3 42215352 42215416 -117384367 + L1_Mus4 LINE L1 5964 6027 -609 3 907 1464 171 91 14 chr3 42215416 42215713 -117384070 + IAPEY3_LTR LTR ERVK 1 320 -12 3 907 4243 73 34 5 chr3 42215721 42216316 -117383467 + L1_Mus4 LINE L1 6022 6633 -3 3 907 1169 56 0 0 chr3 42216480 42216624 -117383159 - B1_Mm SINE Alu -2 145 2 3 907 22 0 0 0 chr3 42217346 42217368 -117382415 + AT_rich Low_complexity Low_complexity 1 22 0 3 907 33 25 0 0 chr3 42217423 42217463 -117382320 + AT_rich Low_complexity Low_complexity 1 40 0 3 907 525 215 50 0 chr3 42217466 42217587 -117382196 - RMER1C Other Other -13 1329 1203 3 907 770 198 6 0 chr3 42217588 42217755 -117382028 + GA-rich Low_complexity Low_complexity 1 168 0 3 907 1128 128 0 0 chr3 42217755 42217934 -117381849 + (GGA)n Simple_repeat Simple_repeat 2 180 0 3 907 189 0 0 0 chr3 42218422 42218443 -117381340 + (TG)n Simple_repeat Simple_repeat 2 22 0 3 907 1283 235 19 39 chr3 42219355 42219686 -117380097 + Lx8 LINE L1 6582 6920 -553 3 907 624 145 9 43 chr3 42219690 42219805 -117379978 + MTC LTR MaLR 2 112 -309 3 907 1153 129 0 47 chr3 42219806 42220018 -117379765 - L1Md_F2 LINE L1 0 6582 6381 3 907 2880 90 0 10 chr3 42219999 42220403 -117379380 + L1Md_F2 LINE L1 6171 6570 -12 3 907 496 230 131 15 chr3 42220417 42220554 -117379229 + Lx3A LINE L1 6820 6972 -9 3 907 1162 200 4 39 chr3 42220575 42220726 -117379057 + MTC LTR MaLR 196 346 -75 3 907 2615 51 39 0 chr3 42220726 42221058 -117378725 + IAPLTR4 LTR ERVK 1 345 0 3 907 1162 200 4 39 chr3 42221058 42221140 -117378643 + MTC LTR MaLR 347 421 0 3 907 1230 298 73 28 chr3 42221143 42221637 -117378146 + Lx8 LINE L1 6954 7469 -4 3 907 1087 197 68 24 chr3 42222645 42222895 -117376888 + Lx9 LINE L1 7212 7472 -172 3 907 32 57 0 0 chr3 42222996 42223049 -117376734 + AT_rich Low_complexity Low_complexity 1 53 0 3 907 506 215 106 75 chr3 42223801 42223921 -117375862 + B3 SINE B2 51 170 -46 3 907 534 16 0 0 chr3 42223921 42223984 -117375799 + (CATA)n Simple_repeat Simple_repeat 4 66 0 3 907 506 215 106 75 chr3 42223984 42224024 -117375759 + B3 SINE B2 171 216 0 3 907 789 109 36 0 chr3 42224026 42224163 -117375620 + Lx LINE L1 6511 6652 -2 3 907 21 0 0 0 chr3 42224300 42224321 -117375462 + AT_rich Low_complexity Low_complexity 1 21 0 3 907 4576 58 0 0 chr3 42224938 42225512 -117374271 + L1Md_F2 LINE L1 5013 5586 -297 3 907 7381 67 25 2 chr3 42225513 42226474 -117373309 + L1Md_F2 LINE L1 5588 6570 -12 3 907 503 31 15 0 chr3 42226756 42226821 -117372962 + (CA)n Simple_repeat Simple_repeat 1 66 0 3 907 432 0 0 0 chr3 42226821 42226868 -117372915 + (GA)n Simple_repeat Simple_repeat 2 49 0 3 907 476 295 24 8 chr3 42227938 42228061 -117371722 + B3A SINE B2 1 125 -73 3 907 953 222 234 81 chr3 42228196 42228589 -117371194 - MT2A LTR ERVL -78 455 3 3 907 934 283 55 26 chr3 42229499 42229920 -117369863 - L1MA5 LINE L1 -17 6283 5851 3 907 361 347 53 16 chr3 42229991 42230234 -117369549 - L1MB1 LINE L1 -73 6095 5844 3 907 1100 245 40 104 chr3 42230250 42230596 -117369187 + MTEa LTR MaLR 1 324 -55 3 907 221 239 0 0 chr3 42230990 42231036 -117368747 + CT-rich Low_complexity Low_complexity 1 46 0 3 907 6278 129 53 6 chr3 42232618 42233650 -117366133 - Lx3B LINE L1 -4 6969 5889 3 907 789 72 8 0 chr3 42233705 42233830 -117365953 + L1Md_F2 LINE L1 6455 6580 -2 3 907 1111 83 7 0 chr3 42233953 42234098 -117365685 + B1_Mus2 SINE Alu 2 147 0 3 907 180 179 0 0 chr3 42235478 42235517 -117364266 + (TA)n Simple_repeat Simple_repeat 2 40 0 3 907 180 0 0 0 chr3 42236256 42236276 -117363507 + (TTA)n Simple_repeat Simple_repeat 1 20 0 3 907 333 0 0 0 chr3 42236276 42236313 -117363470 + (TG)n Simple_repeat Simple_repeat 1 37 0 3 907 375 23 0 0 chr3 42236313 42236356 -117363427 + (GA)n Simple_repeat Simple_repeat 1 44 0 3 907 2461 207 79 0 chr3 42238073 42238605 -117361178 - RMER15 LTR ERVL -1 574 1 3 907 23 0 0 0 chr3 42238741 42238764 -117361019 + AT_rich Low_complexity Low_complexity 1 23 0 3 907 287 305 0 17 chr3 42238771 42238831 -117360952 + ID4 SINE ID 22 80 -3 3 907 277 328 0 107 chr3 42238831 42238846 -117360937 + ID SINE ID 23 89 -135 3 907 3644 82 0 2 chr3 42238955 42239457 -117360326 - L1_Mm LINE L1 -3121 2762 2262 3 907 537 55 0 0 chr3 42239542 42239615 -117360168 + (TCTA)n Simple_repeat Simple_repeat 2 74 0 3 907 465 66 0 0 chr3 42240781 42240842 -117358941 + (TG)n Simple_repeat Simple_repeat 1 61 0 3 907 197 33 0 32 chr3 42241977 42242008 -117357775 + (TAAAA)n Simple_repeat Simple_repeat 2 31 0 3 907 308 254 48 0 chr3 42242089 42242152 -117357631 + RSINE1 SINE B4 44 109 -56 3 907 1674 188 111 36 chr3 42242291 42242705 -117357078 + Lx4B LINE L1 6614 7058 0 3 907 3007 195 12 11 chr3 42242712 42243272 -117356511 + Lx5 LINE L1 6415 6975 -75 3 907 3922 108 24 2 chr3 42243686 42244261 -117355522 - Lx2 LINE L1 0 6997 6410 3 907 10004 90 27 0 chr3 42245538 42247134 -117352649 - Lx3_Mus LINE L1 0 7009 5375 3 907 297 0 0 0 chr3 42247297 42247330 -117352453 + (CA)n Simple_repeat Simple_repeat 2 34 0 3 907 22 0 0 0 chr3 42248183 42248205 -117351578 + AT_rich Low_complexity Low_complexity 1 22 0 3 907 455 331 28 21 chr3 42248259 42248404 -117351379 - B4A SINE B4 -144 148 3 3 907 236 319 175 42 chr3 42248501 42248878 -117350905 + MER31B LTR ERV1 9 435 -31 3 907 213 39 0 0 chr3 42249684 42249710 -117350073 + (TTG)n Simple_repeat Simple_repeat 2 27 0 3 907 327 164 0 0 chr3 42250056 42250117 -117349666 + (TA)n Simple_repeat Simple_repeat 1 61 0 3 907 26 82 0 0 chr3 42250144 42250205 -117349578 + AT_rich Low_complexity Low_complexity 1 61 0 3 907 263 281 113 10 chr3 42250655 42250689 -117349094 + MLT1E1A LTR MaLR 168 201 -479 3 907 1084 86 6 6 chr3 42250689 42250852 -117348931 + (GAAA)n Simple_repeat Simple_repeat 2 164 0 3 907 263 281 113 10 chr3 42250852 42250914 -117348869 + MLT1E1A LTR MaLR 202 272 -408 3 907 244 151 222 19 chr3 42250983 42251037 -117348746 - ID4_ SINE ID -15 68 4 3 907 621 38 0 0 chr3 42251450 42251530 -117348253 + (CA)n Simple_repeat Simple_repeat 1 80 0 3 907 349 368 65 21 chr3 42252488 42252935 -117346848 + L1MCb LINE L1 8 449 -5596 3 907 301 342 50 25 chr3 42253168 42253288 -117346495 + MTE-int LTR MaLR 741 863 -717 3 907 41 58 0 0 chr3 42255633 42255702 -117344081 + AT_rich Low_complexity Low_complexity 1 69 0 3 907 26 30 0 0 chr3 42255928 42255961 -117343822 + AT_rich Low_complexity Low_complexity 1 33 0 3 907 23 0 0 0 chr3 42255976 42255999 -117343784 + AT_rich Low_complexity Low_complexity 1 23 0 3 907 202 190 17 33 chr3 42257034 42257094 -117342689 + CT-rich Low_complexity Low_complexity 1 59 0 3 907 180 250 0 40 chr3 42257705 42257755 -117342028 + L2 LINE L2 1578 1625 -1794 3 907 867 42 0 0 chr3 42257920 42258039 -117341744 - L1Md_A LINE L1 0 6582 6464 3 907 31 58 0 0 chr3 42258385 42258437 -117341346 + AT_rich Low_complexity Low_complexity 1 52 0 3 907 295 29 0 0 chr3 42258628 42258663 -117341120 - U2 snRNA snRNA -153 35 1 3 907 408 40 0 0 chr3 42258810 42258860 -117340923 + (TG)n Simple_repeat Simple_repeat 1 50 0 3 907 25 0 0 0 chr3 42258922 42258947 -117340836 + AT_rich Low_complexity Low_complexity 1 25 0 3 907 527 339 33 0 chr3 42259548 42259728 -117340055 + B3 SINE B2 26 211 -5 3 907 372 278 81 0 chr3 42260062 42260235 -117339548 - L1MA9 LINE L1 -101 6199 6013 3 907 421 313 58 5 chr3 42260601 42260898 -117338885 - L1MA9 LINE L1 -459 5844 5508 3 907 1728 195 59 88 chr3 42260910 42261387 -117338396 - Lx5 LINE L1 -3 7047 6585 3 907 597 313 63 48 chr3 42261423 42262053 -117337730 - L1MA9 LINE L1 -841 5471 4826 3 907 264 233 222 20 chr3 42262065 42262218 -117337565 - L1MA9 LINE L1 -1404 4739 4556 3 907 986 220 18 72 chr3 42262749 42263028 -117336755 + MER67D LTR ERV1 3 266 -248 3 907 24 53 0 0 chr3 42263290 42263328 -117336455 + AT_rich Low_complexity Low_complexity 1 38 0 3 907 414 53 0 0 chr3 42263433 42263490 -117336293 + (TG)n Simple_repeat Simple_repeat 2 58 0 3 907 405 331 29 14 chr3 42263499 42263637 -117336146 - RSINE1 SINE B4 -21 144 5 3 907 668 247 32 209 chr3 42265623 42265843 -117333940 - B3A SINE B2 0 198 6 3 907 477 0 0 0 chr3 42266373 42266426 -117333357 + (CA)n Simple_repeat Simple_repeat 1 53 0 3 907 450 0 0 0 chr3 42266427 42266477 -117333306 + (GA)n Simple_repeat Simple_repeat 1 50 0 3 907 554 318 73 107 chr3 42266889 42267245 -117332538 - MTEa LTR MaLR -33 346 3 3 907 349 287 56 0 chr3 42268258 42268366 -117331417 + MIR3 SINE MIR 68 181 -27 3 907 243 195 0 0 chr3 42269375 42269416 -117330367 - RMER12B LTR ERVK 0 1404 1364 3 907 371 345 92 65 chr3 42270273 42270611 -117329172 - ORR1D1 LTR MaLR -11 363 17 3 907 200 61 61 0 chr3 42270826 42270859 -117328924 + (TCTCTG)n Simple_repeat Simple_repeat 2 36 0 3 907 325 376 28 0 chr3 42271111 42271220 -117328563 - MIRb SINE MIR -152 116 5 3 907 22 0 0 0 chr3 42272268 42272290 -117327493 + AT_rich Low_complexity Low_complexity 1 22 0 3 907 404 341 58 37 chr3 42272767 42272788 -117326995 - B4 SINE B4 -5 287 270 3 907 333 0 0 0 chr3 42272788 42272825 -117326958 + (TC)n Simple_repeat Simple_repeat 1 37 0 3 907 393 75 0 0 chr3 42272827 42272880 -117326903 + (TG)n Simple_repeat Simple_repeat 2 54 0 3 907 404 341 58 37 chr3 42272880 42273044 -117326739 - B4 SINE B4 -23 269 95 3 907 31 68 0 0 chr3 42274053 42274112 -117325671 + AT_rich Low_complexity Low_complexity 1 59 0 4 907 451 356 63 0 chr3 42274232 42274406 -117325377 - B3A SINE B2 -10 188 4 4 907 378 42 0 0 chr3 42274411 42274459 -117325324 + (TG)n Simple_repeat Simple_repeat 1 48 0 4 907 573 15 0 0 chr3 42274459 42274524 -117325259 + (GA)n Simple_repeat Simple_repeat 1 66 0 4 907 396 0 0 0 chr3 42274866 42274910 -117324873 + (TA)n Simple_repeat Simple_repeat 1 44 0 4 907 211 137 57 38 chr3 42275352 42275405 -117324378 + A-rich Low_complexity Low_complexity 3 56 0 4 907 777 22 0 0 chr3 42275556 42275647 -117324136 + (TTCCC)n Simple_repeat Simple_repeat 4 94 0 4 907 1080 282 84 9 chr3 42275735 42276078 -117323705 + MTEa LTR MaLR 8 376 -3 4 907 5285 239 114 57 chr3 42276374 42276691 -117323092 - Lx7 LINE L1 0 7696 7093 4 907 1768 193 56 5 chr3 42276691 42277066 -117322717 + ORR1B1 LTR MaLR 1 394 0 4 907 5731 230 46 14 chr3 42277066 42278133 -117321650 - Lx7 LINE L1 -591 7105 6021 4 907 567 0 0 0 chr3 42278133 42278196 -117321587 + (TTTA)n Simple_repeat Simple_repeat 3 65 0 4 907 1068 71 0 7 chr3 42278198 42278339 -117321444 - B1_Mm SINE Alu -6 141 2 4 907 5687 201 32 196 chr3 42278339 42279236 -117320547 - Lx7 LINE L1 -1676 6020 5347 4 907 3730 118 20 2 chr3 42279236 42279794 -117319989 + L1_Mus3 LINE L1 6068 6635 -3 4 907 2947 197 30 223 chr3 42279794 42279859 -117319924 - Lx7 LINE L1 -534 5346 5287 4 907 3776 70 30 10 chr3 42279859 42280366 -117319417 - L1Md_F2 LINE L1 -11 6571 6055 4 907 2947 197 30 223 chr3 42280366 42280998 -117318785 - Lx7 LINE L1 -594 5286 4684 4 907 254 194 0 88 chr3 42280985 42281053 -117318730 - Lx7 LINE L1 -2099 3781 3720 4 907 1698 171 75 48 chr3 42281057 42281513 -117318270 - Lx7 LINE L1 -2952 2928 2461 4 907 7038 83 0 5 chr3 42281566 42282555 -117317228 - L1Md_F2 LINE L1 -12 6570 5587 4 907 19328 81 5 4 chr3 42282563 42284662 -117315121 - L1Md_F2 LINE L1 -1806 4077 1978 4 907 188 35 35 0 chr3 42284662 42284691 -117315092 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 4 907 19328 111 35 3 chr3 42284691 42286244 -117313539 - L1Md_F2 LINE L1 -3906 1977 371 4 907 3440 197 55 25 chr3 42286249 42286646 -117313137 - Lx7 LINE L1 -3414 2466 2069 4 907 651 26 0 0 chr3 42286646 42286723 -117313060 + (ATGGTG)n Simple_repeat Simple_repeat 1 77 0 4 907 3440 197 55 25 chr3 42286723 42287237 -117312546 - Lx7 LINE L1 -3812 2068 1529 4 907 27167 94 7 6 chr3 42287224 42292098 -117307685 - L1Md_F2 LINE L1 -2 6580 1706 4 907 459 0 0 0 chr3 42292098 42292149 -117307634 + (TG)n Simple_repeat Simple_repeat 2 52 0 4 907 3529 122 2 0 chr3 42292150 42292690 -117307093 - L1Md_F2 LINE L1 -5596 1020 480 4 907 1148 192 21 8 chr3 42292690 42292932 -117306851 - L1VL1 LINE L1 -6156 266 22 4 907 671 202 90 21 chr3 42292912 42293145 -117306638 - Lx7 LINE L1 -4340 1540 1292 4 907 267 104 0 0 chr3 42293150 42293198 -117306585 + (T)n Simple_repeat Simple_repeat 1 48 0 4 907 1119 89 0 27 chr3 42293199 42293349 -117306434 - B1_Mm SINE Alu 0 147 2 4 907 410 145 179 22 chr3 42293360 42293440 -117306343 - Lx7 LINE L1 -6434 1294 1191 4 907 477 34 0 0 chr3 42293440 42293499 -117306284 + (TG)n Simple_repeat Simple_repeat 2 60 0 4 907 410 145 179 22 chr3 42293499 42293552 -117306231 - Lx7 LINE L1 -6538 1190 1141 4 907 882 219 32 5 chr3 42293598 42293818 -117305965 - Lx7 LINE L1 -7199 529 304 4 907 474 202 40 8 chr3 42294268 42294393 -117305390 - L1MA9 LINE L1 -5 6307 6179 4 907 414 0 0 0 chr3 42295854 42295900 -117303883 + (TA)n Simple_repeat Simple_repeat 1 46 0 4 907 556 361 94 25 chr3 42296194 42296586 -117303197 + RMER5 LTR ERV1 116 534 0 4 907 327 345 48 34 chr3 42297129 42297276 -117302507 - B1F SINE Alu 0 149 1 4 907 280 295 0 0 chr3 42298050 42298128 -117301655 + MTC LTR MaLR 313 390 -31 4 907 429 121 0 0 chr3 42298129 42298212 -117301571 + (T)n Simple_repeat Simple_repeat 1 83 0 4 907 200 35 35 0 chr3 42298362 42298391 -117301392 + (TTTTG)n Simple_repeat Simple_repeat 3 32 0 4 907 234 91 0 0 chr3 42298596 42298629 -117301154 + (A)n Simple_repeat Simple_repeat 1 33 0 4 907 27 49 0 0 chr3 42298834 42298875 -117300908 + AT_rich Low_complexity Low_complexity 1 41 0 4 907 1136 70 0 0 chr3 42298881 42299023 -117300760 - B1_Mm SINE Alu -5 142 1 4 907 4000 40 0 0 chr3 42299049 42299546 -117300237 - L1Md_F2 LINE L1 -201 6381 5885 4 907 1436 22 0 6 chr3 42299546 42299725 -117300058 + L1Md_F2 LINE L1 6404 6581 -1 4 907 458 80 27 0 chr3 42299861 42299936 -117299847 + (CAGAGA)n Simple_repeat Simple_repeat 6 82 0 4 907 369 0 0 0 chr3 42302935 42302976 -117296807 + (TG)n Simple_repeat Simple_repeat 1 41 0 4 907 342 0 0 0 chr3 42302976 42303013 -117296770 + (GA)n Simple_repeat Simple_repeat 1 38 0 4 907 561 266 121 6 chr3 42303097 42303271 -117296512 - B4 SINE B4 -65 227 34 4 907 413 19 19 0 chr3 42303363 42303417 -117296366 + (CAA)n Simple_repeat Simple_repeat 2 56 0 4 907 521 307 104 62 chr3 42303606 42304009 -117295774 + MTE-int LTR MaLR 893 1470 -110 4 907 632 13 0 13 chr3 42304026 42304104 -117295679 + (TG)n Simple_repeat Simple_repeat 2 78 0 4 907 22 0 0 0 chr3 42304325 42304347 -117295436 + AT_rich Low_complexity Low_complexity 1 22 0 4 907 464 301 72 29 chr3 42305381 42305590 -117294193 - RLTR16 LTR ERVK -255 250 33 4 907 381 22 0 0 chr3 42305636 42305682 -117294101 + (TG)n Simple_repeat Simple_repeat 1 46 0 4 907 564 292 0 0 chr3 42305714 42305834 -117293949 - RSINE1 SINE B4 -41 124 5 4 907 477 375 41 37 chr3 42305860 42306131 -117293652 + MLT1A0 LTR MaLR 63 334 -31 4 907 2141 174 2 13 chr3 42306178 42306575 -117293208 + Lx3C LINE L1 6288 6680 -296 4 907 3075 26 2 89 chr3 42306575 42307002 -117292781 - RLTR10 LTR ERVK 0 390 1 4 907 8351 22 0 1 chr3 42307004 42307998 -117291785 - RLTR10-int LTR ERVK -3 1984 992 4 907 322 258 39 15 chr3 42308081 42308211 -117291572 - RLTR10-int LTR ERVK -5987 1594 1462 4 907 4223 38 1 11 chr3 42308275 42309171 -117290612 - RLTR10-int LTR ERVK -989 998 41 4 907 3054 26 2 89 chr3 42309183 42309608 -117290175 - RLTR10 LTR ERVK -2 388 1 4 907 1411 199 45 0 chr3 42309608 42309895 -117289888 + Lx3C LINE L1 6675 6974 -2 4 907 379 102 17 0 chr3 42310158 42310217 -117289566 - Lx9 LINE L1 -555 7089 7030 4 907 679 227 123 0 chr3 42310222 42310473 -117289310 + Lx9 LINE L1 7361 7642 -2 4 907 581 88 10 0 chr3 42311295 42311397 -117288386 + (GA)n Simple_repeat Simple_repeat 1 103 0 4 907 618 51 0 0 chr3 42312229 42312307 -117287476 + (GA)n Simple_repeat Simple_repeat 2 79 0 4 907 231 329 75 63 chr3 42312426 42312585 -117287198 + RMER15 LTR ERVL 319 479 -96 4 907 793 182 25 6 chr3 42312920 42313080 -117286703 - L1Md_F LINE L1 -5779 740 578 4 907 26005 120 24 12 chr3 42313173 42318846 -117280937 + L1_Mus2 LINE L1 823 6565 -1 4 907 885 287 123 4 chr3 42318937 42319189 -117280594 - B4A SINE B4 -3 289 8 4 907 692 314 51 11 chr3 42320944 42321218 -117278565 + B4 SINE B4 2 286 -6 4 907 1047 60 15 0 chr3 42321841 42321975 -117277808 + B1_Mus1 SINE Alu 1 136 -12 4 907 1327 283 34 9 chr3 42322537 42322862 -117276921 - MTEb LTR MaLR -42 337 5 4 907 25 0 0 0 chr3 42323187 42323212 -117276571 + AT_rich Low_complexity Low_complexity 1 25 0 4 907 321 26 0 0 chr3 42323218 42323256 -117276527 + (TGAA)n Simple_repeat Simple_repeat 4 41 0 4 907 357 350 15 54 chr3 42323257 42323387 -117276396 - B3A SINE B2 -38 160 36 4 907 4190 177 20 72 chr3 42323393 42323819 -117275964 + RMER13B LTR ERVK 1 414 -494 4 907 1982 90 10 7 chr3 42323819 42324110 -117275673 + L1_Mus3 LINE L1 6347 6638 0 4 907 4190 177 20 72 chr3 42324110 42324608 -117275175 + RMER13B LTR ERVK 415 877 -31 4 907 552 375 78 12 chr3 42324756 42325091 -117274692 + MLT1A LTR MaLR 18 374 0 4 907 623 297 43 0 chr3 42325272 42325410 -117274373 + RSINE1 SINE B4 3 146 -19 4 907 225 0 0 0 chr3 42325418 42325443 -117274340 + (CA)n Simple_repeat Simple_repeat 2 26 0 4 907 1388 308 25 83 chr3 42326444 42326996 -117272787 - RMER19C LTR ERVK 0 611 92 4 907 433 55 0 0 chr3 42326996 42327051 -117272732 - L1Md_F2 LINE L1 -444 6138 6084 4 907 479 147 8 33 chr3 42327052 42327172 -117272611 + L1Md_F2 LINE L1 6466 6582 0 4 907 249 400 0 0 chr3 42327173 42327239 -117272544 - RMER19C LTR ERVK -430 181 116 4 907 4525 141 128 57 chr3 42327239 42328187 -117271596 + RLTR13D2 LTR ERVK 1 1015 -8 4 907 717 131 7 44 chr3 42328211 42328347 -117271436 - RMER19C LTR ERVK -480 131 1 4 907 2071 168 8 24 chr3 42331552 42331924 -117267859 - Lx2 LINE L1 -6 6991 6626 4 907 298 103 14 29 chr3 42332178 42332248 -117267535 + (CAAAA)n Simple_repeat Simple_repeat 2 70 0 4 907 371 91 0 0 chr3 42332553 42332608 -117267175 - B1_Mus2 SINE Alu -1 146 92 4 907 713 279 50 38 chr3 42333496 42333813 -117265970 + Charlie25 DNA MER1_type 92 412 -2112 4 907 345 125 0 0 chr3 42334023 42334079 -117265704 + (CA)n Simple_repeat Simple_repeat 1 56 0 4 907 518 263 127 11 chr3 42334149 42334330 -117265453 - B3 SINE B2 -13 203 2 4 907 299 44 22 0 chr3 42334723 42334768 -117265015 + (TG)n Simple_repeat Simple_repeat 1 46 0 4 907 444 317 41 0 chr3 42334783 42334906 -117264877 - RSINE1 SINE B4 -35 130 3 4 907 237 65 0 0 chr3 42335048 42335079 -117264704 + (ATG)n Simple_repeat Simple_repeat 2 32 0 4 907 752 313 51 60 chr3 42335334 42335650 -117264133 - LTR16C LTR ERVL -149 340 28 4 908 208 77 25 25 chr3 42337349 42337389 -117262394 + (TA)n Simple_repeat Simple_repeat 2 41 0 4 908 433 329 130 9 chr3 42338290 42338520 -117261263 + RMER15 LTR ERVL 299 556 -19 4 908 201 211 0 34 chr3 42340257 42340316 -117259467 + A-rich Low_complexity Low_complexity 2 58 0 4 908 252 0 0 0 chr3 42340570 42340598 -117259185 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 4 908 495 277 183 36 chr3 42340601 42340852 -117258931 - B4A SINE B4 -3 289 2 4 908 307 250 60 0 chr3 42343387 42343471 -117256312 - L1MA6 LINE L1 -326 5974 5886 4 908 226 368 123 0 chr3 42343667 42343773 -117256010 - ORR1E LTR MaLR -4 375 257 4 908 4149 117 4 41 chr3 42343944 42344622 -117255161 - Lx3A LINE L1 -3 6978 6326 4 908 344 263 52 10 chr3 42344623 42344719 -117255064 - ORR1E LTR MaLR -257 102 3 4 908 250 341 37 37 chr3 42344851 42344985 -117254798 - LTR16E1 LTR ERVL -3 535 402 4 908 697 344 138 7 chr3 42345558 42346014 -117253769 - Charlie1b DNA MER1_type -6 517 2 4 908 209 189 0 0 chr3 42347522 42347559 -117252224 + (TTG)n Simple_repeat Simple_repeat 2 38 0 4 908 422 320 241 11 chr3 42347692 42348478 -117251305 + L2 LINE L2 1075 2040 -1379 4 908 816 161 0 0 chr3 42348512 42348674 -117251109 + (TG)n Simple_repeat Simple_repeat 1 162 0 4 908 329 287 90 39 chr3 42348675 42348831 -117250952 - RSINE1 SINE B4 0 165 2 4 908 552 169 0 51 chr3 42349142 42349279 -117250504 + Lx3B LINE L1 6837 6966 -7 4 908 27 29 0 0 chr3 42349287 42349321 -117250462 + AT_rich Low_complexity Low_complexity 1 34 0 4 908 354 45 0 0 chr3 42349382 42349426 -117250357 + (TTTA)n Simple_repeat Simple_repeat 2 45 0 4 908 894 214 22 0 chr3 42350885 42351063 -117248720 - Lx9 LINE L1 -372 7272 7091 5 908 1119 182 192 3 chr3 42351063 42351360 -117248423 + Lx9 LINE L1 7283 7635 -9 5 908 31 0 0 0 chr3 42351366 42351397 -117248386 + AT_rich Low_complexity Low_complexity 1 31 0 5 908 499 291 53 10 chr3 42351610 42351818 -117247965 - L1M5 LINE L1 -303 5821 5605 5 908 21 36 0 0 chr3 42352378 42352406 -117247377 + AT_rich Low_complexity Low_complexity 1 28 0 5 908 1830 348 66 24 chr3 42352993 42354143 -117245640 + Lx8 LINE L1 6240 7438 -35 5 908 33 43 0 0 chr3 42354463 42354510 -117245273 + AT_rich Low_complexity Low_complexity 1 47 0 5 908 1817 235 42 9 chr3 42355789 42356240 -117243543 - Lx9 LINE L1 -266 7378 6913 5 908 432 0 0 0 chr3 42356252 42356300 -117243483 + (TA)n Simple_repeat Simple_repeat 2 49 0 5 908 403 187 150 7 chr3 42356379 42356519 -117243264 + Lx9 LINE L1 7484 7643 -1 5 908 21 71 0 0 chr3 42356532 42356574 -117243209 + AT_rich Low_complexity Low_complexity 1 42 0 5 908 2707 143 4 17 chr3 42357138 42357602 -117242181 + Lx2A1 LINE L1 6546 7003 -5 5 908 233 312 94 0 chr3 42359162 42359290 -117240493 - MER104 DNA Tc2 -3 178 39 5 908 700 327 127 67 chr3 42359451 42359977 -117239806 - MLT1F LTR MaLR 0 555 1 5 908 346 20 39 0 chr3 42360196 42360247 -117239536 + (TA)n Simple_repeat Simple_repeat 1 53 0 5 908 419 273 21 41 chr3 42361579 42361724 -117238059 + ID_B1 SINE B4 81 222 -2 5 908 477 0 0 0 chr3 42362310 42362363 -117237420 + (TG)n Simple_repeat Simple_repeat 2 54 0 5 908 738 84 0 0 chr3 42362809 42362916 -117236867 + (CA)n Simple_repeat Simple_repeat 2 108 0 5 908 201 147 0 0 chr3 42364153 42364187 -117235596 + (A)n Simple_repeat Simple_repeat 1 34 0 5 908 44 46 0 0 chr3 42364786 42364851 -117234932 + AT_rich Low_complexity Low_complexity 1 65 0 5 908 243 281 94 4 chr3 42364867 42364962 -117234821 + B1F SINE Alu 1 99 -18 5 908 396 59 0 0 chr3 42365353 42365404 -117234379 + (CA)n Simple_repeat Simple_repeat 2 52 0 5 908 444 67 0 0 chr3 42366308 42366368 -117233415 + (TG)n Simple_repeat Simple_repeat 1 60 0 5 908 581 0 14 0 chr3 42366379 42366448 -117233335 + (GA)n Simple_repeat Simple_repeat 1 70 0 5 908 1063 268 70 8 chr3 42366800 42367157 -117232626 + MTE2a LTR MaLR 1 379 0 5 908 440 329 7 53 chr3 42368330 42368481 -117231302 + B4A SINE B4 7 150 -142 5 908 479 331 0 67 chr3 42368509 42368674 -117231109 + B4A SINE B4 135 288 -4 5 908 621 0 0 0 chr3 42368764 42368833 -117230950 + (GA)n Simple_repeat Simple_repeat 1 69 0 5 908 22 56 0 0 chr3 42370049 42370085 -117229698 + AT_rich Low_complexity Low_complexity 1 36 0 5 908 535 361 90 4 chr3 42370141 42370419 -117229364 - MER21B LTR ERV1 -88 775 474 5 908 265 314 14 0 chr3 42370586 42370656 -117229127 - MER21B LTR ERV1 -605 258 188 5 908 224 284 43 54 chr3 42371120 42371213 -117228570 - L2a LINE L2 0 3426 3335 5 908 275 281 74 66 chr3 42371362 42371484 -117228299 + RMER15 LTR ERVL 1 123 -452 5 908 298 261 102 0 chr3 42371584 42371672 -117228111 + RMER15 LTR ERVL 479 575 0 5 908 585 28 0 0 chr3 42371993 42372064 -117227719 + (CA)n Simple_repeat Simple_repeat 2 72 0 5 908 239 173 27 0 chr3 42372138 42372213 -117227570 + (CAGAGA)n Simple_repeat Simple_repeat 2 78 0 5 908 281 304 0 12 chr3 42372249 42372329 -117227454 - ORR1E LTR MaLR -243 116 38 5 908 324 148 0 0 chr3 42373550 42373611 -117226172 + (TG)n Simple_repeat Simple_repeat 2 62 0 5 908 322 243 175 150 chr3 42373612 42373772 -117226011 - RSINE1 SINE B4 0 165 2 5 908 389 328 88 49 chr3 42374439 42374760 -117225023 - L2c LINE L2 -2 3385 3009 5 908 378 171 0 0 chr3 42375665 42375735 -117224048 + (CATATA)n Simple_repeat Simple_repeat 1 70 0 5 908 230 354 30 10 chr3 42377073 42377173 -117222610 - MTEb LTR MaLR -12 358 257 5 908 1600 183 46 7 chr3 42377170 42377594 -117222189 + RMER17C LTR ERVK 19 439 -519 5 908 670 273 43 0 chr3 42377689 42377850 -117221933 - MTEb LTR MaLR -207 172 5 5 908 1062 246 81 17 chr3 42379553 42380076 -117219707 - Lx9 LINE L1 -6 7638 7067 5 908 2421 208 19 21 chr3 42380074 42380596 -117219187 + Lx9 LINE L1 6540 7060 -584 5 908 525 71 0 0 chr3 42381310 42381380 -117218403 + (TG)n Simple_repeat Simple_repeat 2 71 0 5 908 315 0 0 0 chr3 42381380 42381415 -117218368 + (TAG)n Simple_repeat Simple_repeat 2 36 0 5 908 362 299 60 60 chr3 42381705 42381922 -117217861 + MTEa LTR MaLR 1 217 -162 5 908 366 280 50 0 chr3 42382063 42382163 -117217620 + Lx8 LINE L1 7157 7261 -212 5 908 452 48 16 0 chr3 42382244 42382307 -117217476 + (TG)n Simple_repeat Simple_repeat 2 65 0 5 908 21 36 0 0 chr3 42382561 42382589 -117217194 + AT_rich Low_complexity Low_complexity 1 28 0 5 908 249 282 14 0 chr3 42382601 42382672 -117217111 + Lx8 LINE L1 6964 7035 -438 5 908 22 0 0 0 chr3 42383933 42383955 -117215828 + AT_rich Low_complexity Low_complexity 1 22 0 5 908 297 0 0 0 chr3 42384266 42384299 -117215484 + (CA)n Simple_repeat Simple_repeat 2 34 0 5 908 1913 204 47 6 chr3 42384464 42384829 -117214954 - RLTR20D LTR ERVK 0 568 189 5 908 2722 59 2 128 chr3 42385170 42385614 -117214169 + RLTR10 LTR ERVK 1 388 -2 5 908 392 289 116 8 chr3 42386112 42386241 -117213542 - B1F1 SINE Alu -5 144 2 5 908 29 47 0 0 chr3 42386701 42386744 -117213039 + AT_rich Low_complexity Low_complexity 1 43 0 5 908 640 270 67 19 chr3 42387478 42387686 -117212097 - MER63C DNA AcHobo -264 666 449 5 908 412 327 81 103 chr3 42387682 42387780 -117212003 - MER63C DNA AcHobo -435 495 398 5 908 465 19 0 0 chr3 42387780 42387834 -117211949 + (TG)n Simple_repeat Simple_repeat 2 55 0 5 908 412 327 81 103 chr3 42387834 42387850 -117211933 - MER63C DNA AcHobo -533 397 393 5 908 456 19 0 0 chr3 42387850 42387903 -117211880 + (TA)n Simple_repeat Simple_repeat 1 53 0 5 908 412 327 81 103 chr3 42387903 42388292 -117211491 - MER63C DNA AcHobo -538 392 2 5 908 1703 139 14 0 chr3 42390006 42390287 -117209496 - L1_Mur2 LINE L1 -1667 4210 3926 5 908 2834 141 12 35 chr3 42390290 42390781 -117209002 + Lx2 LINE L1 6518 6997 0 5 908 881 9 9 0 chr3 42390802 42390908 -117208875 + (CA)n Simple_repeat Simple_repeat 2 108 0 5 908 270 0 0 0 chr3 42391730 42391760 -117208023 + (A)n Simple_repeat Simple_repeat 1 30 0 5 908 2421 148 5 18 chr3 42392681 42393080 -117206703 + ORR1B1 LTR MaLR 1 394 0 5 908 529 282 39 151 chr3 42394123 42394328 -117205455 + B3A SINE B2 9 191 -7 5 908 612 249 72 34 chr3 42396822 42397059 -117202724 + MER58D DNA MER1_type 125 370 -16 5 908 627 120 0 0 chr3 42399521 42399638 -117200145 + (TCTA)n Simple_repeat Simple_repeat 2 118 0 5 908 315 0 0 0 chr3 42399639 42399674 -117200109 + (TG)n Simple_repeat Simple_repeat 2 36 0 5 908 32 67 0 0 chr3 42399922 42399982 -117199801 + AT_rich Low_complexity Low_complexity 1 60 0 5 908 249 83 0 0 chr3 42400447 42400483 -117199300 + (TG)n Simple_repeat Simple_repeat 1 36 0 5 908 450 0 0 0 chr3 42401742 42401792 -117197991 + (TG)n Simple_repeat Simple_repeat 1 50 0 5 908 22 35 0 0 chr3 42402493 42402522 -117197261 + AT_rich Low_complexity Low_complexity 1 29 0 5 908 1067 346 104 67 chr3 42404160 42404395 -117195388 - Lx8 LINE L1 -5 7468 7236 5 908 411 303 42 0 chr3 42404395 42404537 -117195246 - B1_Mus1 SINE Alu 0 148 1 5 908 1067 346 104 67 chr3 42404537 42405228 -117194555 - Lx8 LINE L1 -238 7235 6508 5 908 369 259 46 69 chr3 42405273 42405447 -117194336 - Lx7 LINE L1 -1803 5893 5724 5 908 244 327 131 18 chr3 42405607 42405763 -117194020 + MIRb SINE MIR 34 202 -6 5 908 22 56 0 0 chr3 42406200 42406236 -117193547 + AT_rich Low_complexity Low_complexity 1 36 0 5 908 24 0 0 0 chr3 42406255 42406279 -117193504 + AT_rich Low_complexity Low_complexity 1 24 0 5 908 425 189 39 39 chr3 42406779 42406906 -117192877 - Lx6 LINE L1 -9 7451 7325 5 908 476 56 0 27 chr3 42408488 42408561 -117191222 + (TTTA)n Simple_repeat Simple_repeat 3 73 0 5 908 572 333 28 23 chr3 42408581 42408799 -117190984 + MER58B DNA MER1_type 123 341 0 5 908 21 36 0 0 chr3 42408877 42408905 -117190878 + AT_rich Low_complexity Low_complexity 1 28 0 5 908 261 244 12 35 chr3 42408992 42409077 -117190706 + GA-rich Low_complexity Low_complexity 4 86 0 5 908 555 355 52 25 chr3 42409077 42409381 -117190402 - MLT2D LTR ERVL -113 351 55 5 908 771 83 0 0 chr3 42409418 42409526 -117190257 + (CA)n Simple_repeat Simple_repeat 1 108 0 5 908 244 164 30 0 chr3 42409563 42409630 -117190153 + (TTAGGG)n Simple_repeat Simple_repeat 5 73 0 5 908 5266 203 36 63 chr3 42410178 42411586 -117188197 + Lx2 LINE L1 5615 6984 -13 5 908 788 302 89 49 chr3 42412029 42412377 -117187406 + MurERV4-int LTR ERVK 4543 4876 -384 5 908 288 0 0 0 chr3 42412377 42412409 -117187374 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 5 908 788 302 89 49 chr3 42412409 42412554 -117187229 + MurERV4-int LTR ERVK 4877 4951 -309 5 908 491 282 81 46 chr3 42412571 42412768 -117187015 + MurERV4-int LTR ERVK 4954 5157 -1393 5 908 425 266 81 61 chr3 42412771 42412919 -117186864 + RMER4A LTR ERVK 289 439 -27 5 908 3826 225 64 30 chr3 42412919 42414033 -117185750 + MYSERV6-int LTR ERVK 7763 8914 -45 5 908 252 236 0 0 chr3 42414062 42414117 -117185666 + MYSERV6-int LTR ERVK 8904 8958 -1 5 908 1056 241 66 33 chr3 42414118 42414453 -117185330 + RLTR15 LTR ERVK 1 346 -13 5 908 23 33 0 0 chr3 42414812 42414842 -117184941 + AT_rich Low_complexity Low_complexity 1 30 0 5 908 629 182 7 0 chr3 42414952 42415095 -117184688 + CT-rich Low_complexity Low_complexity 2 145 0 5 908 860 174 0 11 chr3 42415106 42415286 -117184497 + (TCTG)n Simple_repeat Simple_repeat 3 180 0 5 908 2143 266 63 77 chr3 42415300 42416405 -117183378 + RMER17B LTR ERVK 1 899 -9 5 908 822 93 24 12 chr3 42416963 42417127 -117182656 + (TCTCTG)n Simple_repeat Simple_repeat 3 168 0 5 908 1162 56 0 0 chr3 42417357 42417499 -117182284 + B1_Mm SINE Alu 1 142 -5 5 908 987 306 58 45 chr3 42418441 42418681 -117181102 - ORR1C2 LTR MaLR -2 382 139 5 908 3047 69 5 2 chr3 42418681 42419076 -117180707 + MTA_Mm LTR MaLR 1 396 0 5 908 8739 50 4 3 chr3 42419076 42420173 -117179610 + MTA_Mm-int LTR MaLR 1 1098 0 5 908 3175 51 5 2 chr3 42420173 42420568 -117179215 + MTA_Mm LTR MaLR 1 396 0 5 908 987 306 58 45 chr3 42420568 42420702 -117179081 - ORR1C2 LTR MaLR -246 138 3 5 908 998 60 8 0 chr3 42420806 42420940 -117178843 + (TC)n Simple_repeat Simple_repeat 2 136 0 5 908 423 188 37 8 chr3 42421655 42421789 -117177994 + Lx9 LINE L1 7506 7643 -1 5 908 27 0 0 0 chr3 42422317 42422344 -117177439 + AT_rich Low_complexity Low_complexity 1 27 0 5 908 5760 113 20 8 chr3 42422347 42423226 -117176557 - Lx3_Mus LINE L1 -21 6988 6099 5 908 2290 158 12 14 chr3 42423472 42423895 -117175888 - Lx2 LINE L1 0 6997 6576 6 908 795 202 110 5 chr3 42423901 42424120 -117175663 + Lx2B LINE L1 6050 6291 -709 6 908 204 125 0 0 chr3 42424873 42424905 -117174878 + (TTCTCC)n Simple_repeat Simple_repeat 5 36 0 6 908 449 132 65 9 chr3 42424913 42425020 -117174763 - Lx3C LINE L1 -3 6973 6861 6 908 2181 178 26 0 chr3 42425034 42425422 -117174361 - Lx2A1 LINE L1 -1 7007 6610 6 908 390 89 0 0 chr3 42425425 42425481 -117174302 + Lx2B LINE L1 6559 6614 -386 6 908 453 19 0 0 chr3 42425515 42425569 -117174214 + (TTTTG)n Simple_repeat Simple_repeat 2 55 0 6 908 596 300 0 0 chr3 42426032 42426172 -117173611 + B3 SINE B2 1 140 -76 6 908 222 37 0 0 chr3 42426405 42426432 -117173351 + (TTTTG)n Simple_repeat Simple_repeat 3 29 0 6 908 681 101 0 0 chr3 42426750 42426849 -117172934 + (TCTA)n Simple_repeat Simple_repeat 4 102 0 6 908 1389 119 23 0 chr3 42426857 42427075 -117172708 - Lx2 LINE L1 0 6997 6775 6 908 308 78 20 0 chr3 42427077 42427128 -117172655 - Lx2 LINE L1 -356 6641 6590 6 908 498 185 11 0 chr3 42427121 42427213 -117172570 + L1_Mur2 LINE L1 5073 5165 -712 6 908 372 303 92 75 chr3 42427247 42427640 -117172143 - RLTR12B LTR ERVK -130 438 47 6 908 2169 139 44 0 chr3 42427863 42428229 -117171554 + Lx2B LINE L1 6615 6996 -4 6 908 709 88 9 0 chr3 42428246 42428360 -117171423 + L1_Mus1 LINE L1 6452 6566 -1 6 908 306 159 0 47 chr3 42428464 42428550 -117171233 + GA-rich Low_complexity Low_complexity 2 83 0 6 908 358 185 54 11 chr3 42428715 42428808 -117170975 + L1Md_F3 LINE L1 6474 6570 -14 6 908 435 325 98 51 chr3 42429576 42429965 -117169818 + Tigger11a DNA MER2_type 285 691 -44 6 908 435 113 0 0 chr3 42431356 42431427 -117168356 + (TA)n Simple_repeat Simple_repeat 1 71 0 6 908 204 181 72 26 chr3 42431441 42431594 -117168189 + (TA)n Simple_repeat Simple_repeat 1 160 0 6 908 336 48 0 0 chr3 42431607 42431649 -117168134 + (CA)n Simple_repeat Simple_repeat 2 43 0 6 908 1077 93 0 23 chr3 42431696 42431872 -117167911 + (CATATA)n Simple_repeat Simple_repeat 3 174 0 6 908 224 362 10 21 chr3 42432090 42432186 -117167597 + PB1D10 SINE Alu 3 97 -20 6 908 393 75 0 0 chr3 42433392 42433445 -117166338 + (TTA)n Simple_repeat Simple_repeat 3 55 0 6 908 3335 50 0 5 chr3 42433474 42433895 -117165888 - L1Md_F2 LINE L1 -1 6581 6163 6 908 616 362 29 47 chr3 42435035 42435313 -117164470 + B4A SINE B4 8 280 -12 6 908 1004 279 68 20 chr3 42435986 42436337 -117163446 + ORR1D2 LTR MaLR 1 368 -2 6 908 27 29 0 0 chr3 42441695 42441729 -117158054 + AT_rich Low_complexity Low_complexity 1 34 0 6 908 3409 25 5 0 chr3 42442510 42442904 -117156879 - MTA_Mm LTR MaLR 0 396 1 6 908 9358 23 3 2 chr3 42442904 42444001 -117155782 - MTA_Mm-int LTR MaLR 0 1098 1 6 908 3460 18 5 0 chr3 42444001 42444395 -117155388 - MTA_Mm LTR MaLR 0 396 1 6 908 256 395 0 0 chr3 42445823 42445909 -117153874 - Arthur1B DNA Tip100 -1138 87 2 6 908 319 274 87 47 chr3 42447191 42447363 -117152420 + HAL1-3A_ME LINE L1 2261 2439 -419 6 908 198 143 0 0 chr3 42447363 42447398 -117152385 + (GA)n Simple_repeat Simple_repeat 1 35 0 6 908 306 0 0 0 chr3 42447886 42447920 -117151863 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 6 908 343 322 91 0 chr3 42448869 42448990 -117150793 + RSINE1 SINE B4 1 132 -33 6 908 214 271 28 14 chr3 42449215 42449286 -117150497 + L2c LINE L2 3315 3386 -1 6 908 761 244 11 39 chr3 42449726 42449905 -117149878 + ORR1D1 LTR MaLR 9 182 -192 6 908 687 263 68 59 chr3 42449934 42450156 -117149627 + ORR1D1 LTR MaLR 151 374 0 6 908 6156 58 26 1 chr3 42450265 42451075 -117148708 - L1Md_F3 LINE L1 -14 6570 5741 6 908 876 10 0 0 chr3 42451087 42451188 -117148595 + (CA)n Simple_repeat Simple_repeat 1 101 0 6 908 271 271 0 0 chr3 42451633 42451718 -117148065 + T-rich Low_complexity Low_complexity 1 85 0 6 908 3538 68 2 2 chr3 42453376 42453831 -117145952 - L1_Mus2 LINE L1 0 6566 6112 6 908 382 116 14 0 chr3 42453839 42453908 -117145875 + L1_Mm LINE L1 1692 1761 -4122 6 908 423 98 0 0 chr3 42454153 42454214 -117145569 + (CCA)n Simple_repeat Simple_repeat 1 61 0 6 908 1782 232 123 19 chr3 42454278 42454410 -117145373 - Lx9 LINE L1 -7 7637 7471 6 908 672 13 0 0 chr3 42454410 42454487 -117145296 + (TC)n Simple_repeat Simple_repeat 1 77 0 6 908 1782 232 123 19 chr3 42454487 42454889 -117144894 - Lx9 LINE L1 -174 7470 7047 6 908 709 197 20 7 chr3 42455627 42455780 -117144003 - Lx4B LINE L1 -5 7053 6899 6 908 1078 76 0 20 chr3 42456917 42457064 -117142719 - B1_Mm SINE Alu -3 144 1 6 908 340 301 51 13 chr3 42457273 42457431 -117142352 - L1ME4a LINE L1 -260 5864 5701 6 908 23 33 0 0 chr3 42457571 42457601 -117142182 + AT_rich Low_complexity Low_complexity 1 30 0 6 908 591 296 51 31 chr3 42457716 42458131 -117141652 - Lx9 LINE L1 0 7644 7222 6 908 422 261 26 9 chr3 42459016 42459132 -117140651 - RMER5 LTR ERV1 -17 517 400 6 908 295 315 0 0 chr3 42460344 42460417 -117139366 - PB1D10 SINE Alu -39 78 6 6 908 689 324 69 80 chr3 42462873 42463148 -117136635 + MTEb LTR MaLR 6 277 -102 6 908 400 184 0 20 chr3 42463194 42463294 -117136489 + CT-rich Low_complexity Low_complexity 4 101 0 6 908 557 326 105 8 chr3 42463447 42463800 -117135983 + L1MA6 LINE L1 5899 6285 -15 6 908 443 33 16 0 chr3 42464868 42464929 -117134854 + (GGAA)n Simple_repeat Simple_repeat 2 63 0 6 908 422 276 132 41 chr3 42465826 42466068 -117133715 + L1MCb LINE L1 1 221 -5824 6 908 588 259 8 0 chr3 42466415 42466546 -117133237 + ID_B1 SINE B4 91 222 -2 6 908 204 40 0 0 chr3 42466840 42466865 -117132918 + (GA)n Simple_repeat Simple_repeat 1 25 0 6 908 441 0 0 0 chr3 42466875 42466924 -117132859 + (TG)n Simple_repeat Simple_repeat 2 50 0 6 909 790 223 0 0 chr3 42468527 42468675 -117131108 - B1_Mur4 SINE Alu -2 148 1 6 909 22 70 0 0 chr3 42468684 42468727 -117131056 + AT_rich Low_complexity Low_complexity 1 43 0 6 909 230 148 79 32 chr3 42469427 42469533 -117130250 + (CAGAGA)n Simple_repeat Simple_repeat 1 111 0 6 909 202 327 0 0 chr3 42470186 42470241 -117129542 + GA-rich Low_complexity Low_complexity 3 57 0 6 909 239 241 78 78 chr3 42470692 42470782 -117129001 + MamSINE1 SINE tRNA 16 105 -185 6 909 694 301 135 61 chr3 42471355 42471681 -117128102 - MTEa LTR MaLR -12 367 18 6 909 342 0 0 0 chr3 42471840 42471878 -117127905 + (TG)n Simple_repeat Simple_repeat 1 38 0 6 909 281 315 172 8 chr3 42471878 42472006 -117127777 - RSINE1 SINE B4 -16 149 1 6 909 6872 108 34 5 chr3 42472749 42473860 -117125923 - L1_Mus3 LINE L1 -8 6630 5487 6 909 186 167 0 0 chr3 42473973 42474009 -117125774 + (TG)n Simple_repeat Simple_repeat 1 36 0 6 909 581 40 13 0 chr3 42474152 42474228 -117125555 + (TA)n Simple_repeat Simple_repeat 1 77 0 6 909 2433 126 105 7 chr3 42475051 42475460 -117124323 - RLTR44B LTR ERVK 0 449 1 6 909 214 324 113 0 chr3 42475898 42475969 -117123814 - BC1_Mm scRNA scRNA -72 80 2 6 909 2845 62 0 0 chr3 42477979 42478335 -117121448 + L1Md_F2 LINE L1 5230 5585 -298 6 909 7398 77 1 13 chr3 42478336 42479332 -117120451 + L1Md_F2 LINE L1 5587 6570 -12 6 909 263 355 56 7 chr3 42479407 42479549 -117120234 + RSINE1 SINE B4 3 151 -14 6 909 30 0 0 0 chr3 42479555 42479585 -117120198 + AT_rich Low_complexity Low_complexity 1 30 0 6 909 305 319 129 44 chr3 42480599 42480871 -117118912 + RMER15 LTR ERVL 229 523 -52 6 909 3871 147 21 66 chr3 42480947 42481691 -117118092 - Lx2 LINE L1 -1 6996 6286 6 909 3785 170 26 10 chr3 42481691 42482767 -117117016 + Lx2 LINE L1 5197 6282 -715 6 909 2219 202 25 55 chr3 42482914 42483444 -117116339 - RLTR28 LTR ERVL -10 514 1 6 909 434 88 0 14 chr3 42483504 42483573 -117116210 + (TCC)n Simple_repeat Simple_repeat 2 69 0 6 909 663 333 24 0 chr3 42485214 42485424 -117114359 + B3 SINE B2 2 216 0 6 909 8132 36 2 0 chr3 42485807 42487450 -117112333 - L1Md_T LINE L1 -3 6579 4934 6 909 2907 77 7 36 chr3 42487450 42487870 -117111913 - L1Md_F2 LINE L1 -14 6568 6161 6 909 44 0 0 0 chr3 42487973 42488017 -117111766 + AT_rich Low_complexity Low_complexity 1 44 0 6 909 1457 58 5 0 chr3 42488017 42488206 -117111577 - L1_Mus1 LINE L1 -2 6565 6376 6 909 465 318 32 7 chr3 42488385 42488540 -117111243 + ID_B1 SINE B4 66 224 0 6 909 189 0 0 0 chr3 42489328 42489349 -117110434 + (TA)n Simple_repeat Simple_repeat 1 21 0 6 909 263 296 8 0 chr3 42490276 42490512 -117109271 + (TG)n Simple_repeat Simple_repeat 1 238 0 6 909 293 100 0 20 chr3 42491707 42491758 -117108025 + (TTTA)n Simple_repeat Simple_repeat 1 50 0 6 909 1142 280 55 65 chr3 42491758 42492269 -117107514 - Lx9 LINE L1 -2 7642 7137 6 909 288 0 0 0 chr3 42493831 42493863 -117105920 + (CA)n Simple_repeat Simple_repeat 1 32 0 6 909 324 0 0 0 chr3 42493874 42493910 -117105873 + (TG)n Simple_repeat Simple_repeat 2 37 0 6 909 2019 208 40 25 chr3 42493924 42494398 -117105385 + RMER6A LTR ERVK 261 741 -15 6 909 416 360 25 61 chr3 42495213 42495411 -117104372 + B4A SINE B4 82 272 -20 6 909 402 21 0 0 chr3 42495426 42495473 -117104310 + (CA)n Simple_repeat Simple_repeat 2 48 0 6 909 702 102 0 0 chr3 42496451 42496569 -117103214 + (TCTA)n Simple_repeat Simple_repeat 4 121 0 6 909 262 103 0 0 chr3 42496613 42496652 -117103131 - U2 snRNA snRNA -149 39 1 6 909 1908 131 103 57 chr3 42497126 42497580 -117102203 + IAPLTR2_Mm LTR ERVK 1 475 0 6 909 297 0 0 0 chr3 42498343 42498376 -117101407 + (CA)n Simple_repeat Simple_repeat 1 33 0 6 909 835 161 299 0 chr3 42499351 42499525 -117100258 + URR1A DNA MER1_type 1 226 0 6 909 22 0 0 0 chr3 42500017 42500039 -117099744 + AT_rich Low_complexity Low_complexity 1 22 0 1 909 251 326 70 70 chr3 42500160 42500345 -117099438 + MER67C LTR ERV1 22 206 -505 2 909 494 287 71 41 chr3 42500352 42500548 -117099235 - Lx7 LINE L1 -1226 6470 6269 3 909 22 35 0 0 chr3 42500745 42500774 -117099009 + AT_rich Low_complexity Low_complexity 1 29 0 4 909 62 0 0 0 chr3 42500870 42500932 -117098851 + AT_rich Low_complexity Low_complexity 1 62 0 5 909 528 315 60 24 chr3 42501011 42501177 -117098606 + B3A SINE B2 4 175 -23 6 909 25 0 0 0 chr3 42501325 42501350 -117098433 + AT_rich Low_complexity Low_complexity 1 25 0 7 909 221 0 35 0 chr3 42501996 42502025 -117097758 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 8 909 349 331 70 0 chr3 42502772 42502929 -117096854 - Lx8 LINE L1 -320 7153 6986 9 909 645 283 16 37 chr3 42502938 42503129 -117096654 + ORR1D1 LTR MaLR 5 191 -183 1 909 22 0 0 0 chr3 42503181 42503203 -117096580 + AT_rich Low_complexity Low_complexity 1 22 0 1 909 615 313 85 34 chr3 42503292 42503586 -117096197 - Lx8 LINE L1 -941 6532 6224 9 909 327 85 0 0 chr3 42503643 42503690 -117096093 + (GA)n Simple_repeat Simple_repeat 2 48 0 1 909 216 67 0 0 chr3 42504358 42504388 -117095395 + (TCTG)n Simple_repeat Simple_repeat 1 30 0 1 909 334 245 0 0 chr3 42504435 42504529 -117095254 + (TA)n Simple_repeat Simple_repeat 2 95 0 1 909 180 0 0 0 chr3 42504634 42504654 -117095129 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 1 909 21 0 0 0 chr3 42504817 42504838 -117094945 + AT_rich Low_complexity Low_complexity 1 21 0 1 909 28 33 0 62 chr3 42505373 42505400 -117094383 + AT_rich Low_complexity Low_complexity 1 25 0 1 909 2157 136 28 8 chr3 42505400 42505755 -117094028 - Lx3A LINE L1 -4 6977 6616 1 909 3535 44 2 0 chr3 42505741 42506173 -117093610 - L1Md_T LINE L1 0 6582 6150 1 909 28 33 0 62 chr3 42506173 42506209 -117093574 + AT_rich Low_complexity Low_complexity 1 35 0 2 909 36388 50 16 16 chr3 42506242 42508327 -117091456 - L1Md_T LINE L1 -1 6972 4881 2 909 249 167 46 77 chr3 42508327 42508392 -117091391 + RMER20A LTR ERVK 186 248 -268 2 909 36388 50 16 16 chr3 42508392 42512054 -117087729 - L1Md_T LINE L1 -1 4880 1203 2 909 7488 75 28 18 chr3 42512020 42513076 -117086707 - L1Md_Gf LINE L1 -5380 1142 76 2 909 3902 128 5 28 chr3 42513072 42513713 -117086070 - Lx3A LINE L1 -333 6648 6023 2 909 852 302 28 59 chr3 42513807 42514198 -117085585 + MTE2b LTR MaLR 1 379 0 2 909 645 25 0 0 chr3 42515116 42515195 -117084588 + (CA)n Simple_repeat Simple_repeat 2 80 0 2 909 399 21 0 0 chr3 42515196 42515244 -117084539 + (GA)n Simple_repeat Simple_repeat 2 49 0 2 909 229 311 19 0 chr3 42515275 42515381 -117084402 - L1M1 LINE L1 -368 5932 5825 2 909 27 29 0 0 chr3 42515381 42515415 -117084368 + AT_rich Low_complexity Low_complexity 1 34 0 2 909 503 327 7 45 chr3 42515431 42515585 -117084198 - RSINE1 SINE B4 -15 150 3 3 909 274 308 74 34 chr3 42515585 42515733 -117084050 - Lx9 LINE L1 -1846 5798 5645 3 909 258 105 0 0 chr3 42515737 42515775 -117084008 + (TATG)n Simple_repeat Simple_repeat 4 41 0 3 909 186 43 0 0 chr3 42517003 42517026 -117082757 + (TGAA)n Simple_repeat Simple_repeat 2 24 0 3 909 25 31 0 0 chr3 42517203 42517235 -117082548 + AT_rich Low_complexity Low_complexity 1 32 0 3 909 287 342 179 0 chr3 42517247 42517364 -117082419 - RSINE1 SINE B4 -14 151 14 3 909 871 77 0 0 chr3 42518094 42518224 -117081559 + L1Md_T LINE L1 6453 6582 0 3 909 203 132 0 0 chr3 42518441 42518463 -117081320 + (A)n Simple_repeat Simple_repeat 1 22 0 3 909 2478 74 39 0 chr3 42518463 42518814 -117080969 + L1_Mus1 LINE L1 6219 6567 0 3 909 839 80 11 25 chr3 42518814 42518950 -117080833 + B1_Mus1 SINE Alu 4 150 0 3 909 276 53 0 0 chr3 42518957 42518995 -117080788 + (TAAA)n Simple_repeat Simple_repeat 3 40 0 4 909 1455 185 127 3 chr3 42519144 42519466 -117080317 - ORR1A3 LTR MaLR -23 351 1 4 909 252 297 18 26 chr3 42519466 42519565 -117080218 - LTR37A LTR ERV1 -88 338 241 4 909 211 298 10 21 chr3 42519565 42519661 -117080122 + CT-rich Low_complexity Low_complexity 1 95 0 4 909 241 174 0 0 chr3 42519979 42520025 -117079758 + L1_Mur3 LINE L1 5364 5409 -471 4 909 271 98 0 0 chr3 42520042 42520083 -117079700 - L1_Mur3 LINE L1 -1870 4010 3970 4 909 435 38 0 0 chr3 42520084 42520137 -117079646 + (T)n Simple_repeat Simple_repeat 1 53 0 4 909 1018 174 40 40 chr3 42520142 42520390 -117079393 - RLTR45 LTR ERVK -126 356 61 4 909 37796 31 0 1 chr3 42520400 42526805 -117072978 - L1Md_T LINE L1 -1 6584 86 4 909 1958 219 22 26 chr3 42526804 42527309 -117072474 - L1_Mur3 LINE L1 -1901 3979 3477 4 909 604 35 23 0 chr3 42527310 42527397 -117072386 + (TTTTG)n Simple_repeat Simple_repeat 2 90 0 4 909 624 175 24 8 chr3 42527399 42527526 -117072257 - L1_Mur3 LINE L1 -2397 3483 3355 4 909 249 108 0 0 chr3 42527552 42527589 -117072194 + (TC)n Simple_repeat Simple_repeat 2 38 0 5 909 212 386 19 56 chr3 42527622 42527729 -117072054 - ID_B1 SINE B4 -53 171 69 5 909 4735 65 2 2 chr3 42528001 42528602 -117071181 - L1Md_F2 LINE L1 -15 6567 5967 5 909 291 222 48 24 chr3 42529314 42529397 -117070386 - B4A SINE B4 -200 92 8 5 909 860 173 6 67 chr3 42529800 42529969 -117069814 - MTB LTR MaLR -51 349 192 5 909 3238 87 19 11 chr3 42529969 42530444 -117069339 - L1_Mus4 LINE L1 0 6636 6158 5 909 315 361 122 15 chr3 42530810 42531007 -117068776 + MER21B LTR ERV1 588 805 -58 5 909 587 352 5 5 chr3 42531053 42531267 -117068516 + B3 SINE B2 3 216 0 5 909 444 265 34 41 chr3 42532898 42533163 -117066620 + L1VL1 LINE L1 61 485 -5933 5 909 428 271 15 15 chr3 42533186 42533321 -117066462 + L1_Mus1 LINE L1 675 809 -5807 5 909 29970 120 6 14 chr3 42533323 42539231 -117060552 + L1_Mus1 LINE L1 725 6566 -1 5 909 303 191 0 0 chr3 42539253 42539316 -117060467 + (TG)n Simple_repeat Simple_repeat 1 63 0 6 909 485 371 53 53 chr3 42539336 42539581 -117060202 - B4 SINE B4 -2 290 46 6 909 1946 319 59 16 chr3 42539879 42540267 -117059516 + L1_Mur3 LINE L1 209 622 -7106 6 909 2073 152 0 15 chr3 42540267 42540607 -117059176 - Lx2 LINE L1 0 6997 6663 6 909 1946 319 59 16 chr3 42540607 42541128 -117058655 + L1_Mur3 LINE L1 623 1156 -6572 6 909 784 168 94 64 chr3 42541199 42541402 -117058381 - Lx2 LINE L1 -1 6996 6788 6 909 2775 140 9 5 chr3 42541361 42541784 -117057999 + Lx2 LINE L1 6403 6827 -170 6 909 2799 210 164 5 chr3 42541798 42542368 -117057415 + L1_Mur3 LINE L1 1429 2085 -3795 6 909 396 0 0 0 chr3 42542368 42542412 -117057371 + (CA)n Simple_repeat Simple_repeat 1 44 0 6 909 2799 210 164 5 chr3 42542412 42542625 -117057158 + L1_Mur3 LINE L1 2086 2337 -3543 6 909 2380 226 71 10 chr3 42542624 42542780 -117057003 + L1_Mur3 LINE L1 5105 5261 -619 6 909 183 42 0 0 chr3 42542780 42542804 -117056979 + (CAAAA)n Simple_repeat Simple_repeat 1 24 0 6 909 2380 226 71 10 chr3 42542804 42543255 -117056528 + L1_Mur3 LINE L1 5262 5748 -132 6 909 257 247 21 41 chr3 42543261 42543358 -117056425 - L1_Mur3 LINE L1 -3729 2151 2057 6 909 5821 261 52 51 chr3 42543383 42545329 -117054454 + Lx7 LINE L1 5748 7696 0 6 909 4718 122 8 24 chr3 42545609 42546354 -117053429 + Lx LINE L1 5915 6647 -7 6 909 6032 60 7 5 chr3 42546743 42547515 -117052268 + L1_Mus1 LINE L1 5794 6566 -1 7 909 23 0 0 0 chr3 42547998 42548021 -117051762 + AT_rich Low_complexity Low_complexity 1 23 0 7 909 22 0 0 0 chr3 42548140 42548162 -117051621 + AT_rich Low_complexity Low_complexity 1 22 0 7 909 366 80 0 0 chr3 42548251 42548301 -117051482 + (TA)n Simple_repeat Simple_repeat 1 50 0 7 909 1840 244 16 0 chr3 42548735 42549121 -117050662 + MTC LTR MaLR 3 394 -27 7 909 21 0 0 0 chr3 42549127 42549148 -117050635 + AT_rich Low_complexity Low_complexity 1 21 0 7 909 366 23 0 0 chr3 42550299 42550342 -117049441 + (TA)n Simple_repeat Simple_repeat 1 43 0 7 909 24 32 0 0 chr3 42550932 42550963 -117048820 + AT_rich Low_complexity Low_complexity 1 31 0 7 909 251 316 51 0 chr3 42551004 42551102 -117048681 + PB1D10 SINE Alu 5 107 -10 7 909 1156 81 0 0 chr3 42551188 42551336 -117048447 - B1_Mus1 SINE Alu 0 148 1 7 909 247 303 0 13 chr3 42551373 42551450 -117048333 + GA-rich Low_complexity Low_complexity 1 76 0 8 909 215 95 48 0 chr3 42551452 42551494 -117048289 + (CAGAGA)n Simple_repeat Simple_repeat 5 48 0 8 909 285 183 0 77 chr3 42551844 42551909 -117047874 - L1_Mur3 LINE L1 -3707 2176 2117 8 909 244 244 32 16 chr3 42552316 42552393 -117047390 + CT-rich Low_complexity Low_complexity 1 78 0 8 909 365 188 0 12 chr3 42553209 42553290 -117046493 + (TA)n Simple_repeat Simple_repeat 2 81 0 8 909 2546 64 0 0 chr3 42554415 42554741 -117045042 + L1_Mus1 LINE L1 6242 6567 0 8 909 6202 28 0 0 chr3 42555525 42556243 -117043540 - L1Md_F2 LINE L1 -18 6564 5847 8 909 719 78 10 0 chr3 42556459 42556562 -117043221 + (GA)n Simple_repeat Simple_repeat 1 104 0 8 909 341 343 0 20 chr3 42558165 42558266 -117041517 - MT2A LTR ERVL -121 412 314 8 909 1254 314 53 30 chr3 42559309 42559834 -117039949 - Lx8 LINE L1 -1 7472 6936 8 909 230 256 67 9 chr3 42560442 42560544 -117039239 + MIRc SINE MIR 85 195 -13 9 909 240 226 16 16 chr3 42560771 42560834 -117038949 + MTEb LTR MaLR 317 379 0 9 909 465 315 31 23 chr3 42562500 42562630 -117037153 - RSINE1 SINE B4 -21 144 14 9 909 535 331 34 6 chr3 42562672 42562848 -117036935 - B3A SINE B2 -7 191 11 9 909 242 352 110 49 chr3 42563086 42563331 -117036452 + MLT1I LTR MaLR 106 365 -46 9 909 25 83 0 0 chr3 42563447 42563507 -117036276 + AT_rich Low_complexity Low_complexity 1 60 0 9 909 414 0 0 0 chr3 42563677 42563723 -117036060 + (TA)n Simple_repeat Simple_repeat 1 46 0 9 909 5190 263 51 26 chr3 42563901 42564680 -117035103 + Lx6 LINE L1 5739 6524 -936 9 909 1155 96 51 0 chr3 42564680 42564857 -117034926 + B2_Mm2 SINE B2 2 187 -8 9 909 5190 263 51 26 chr3 42564857 42565078 -117034705 + Lx6 LINE L1 6525 6751 -709 9 909 307 0 23 23 chr3 42565078 42565122 -117034661 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 9 909 5190 255 79 22 chr3 42565122 42565598 -117034185 + Lx6 LINE L1 6752 7513 -183 9 909 348 64 0 0 chr3 42565598 42565645 -117034138 + (TTATA)n Simple_repeat Simple_repeat 3 49 0 1 909 959 235 146 11 chr3 42565645 42565785 -117033998 + Lx6 LINE L1 7514 7685 -11 9 909 195 125 0 0 chr3 42565794 42565834 -117033949 + (A)n Simple_repeat Simple_repeat 1 40 0 1 909 23 33 0 0 chr3 42566152 42566182 -117033601 + AT_rich Low_complexity Low_complexity 1 30 0 1 909 727 267 130 26 chr3 42566189 42566460 -117033323 - MTE2a LTR MaLR -62 357 53 1 909 375 23 0 0 chr3 42566555 42566599 -117033184 + (CAA)n Simple_repeat Simple_repeat 2 45 0 1 909 542 302 60 60 chr3 42566720 42566935 -117032848 + B3 SINE B2 2 216 0 1 909 287 282 13 13 chr3 42567380 42567459 -117032324 - MLT2B4 LTR ERVL -477 79 1 1 909 2131 50 0 0 chr3 42567638 42567899 -117031884 + L1Md_T LINE L1 6322 6582 0 1 909 28 61 0 0 chr3 42568865 42568914 -117030869 + AT_rich Low_complexity Low_complexity 1 49 0 1 909 378 0 0 0 chr3 42569219 42569261 -117030522 + (CA)n Simple_repeat Simple_repeat 1 42 0 1 909 311 297 281 7 chr3 42569643 42569800 -117029983 + ID_B1 SINE B4 3 202 -22 1 909 327 136 0 0 chr3 42570039 42570098 -117029685 + (TG)n Simple_repeat Simple_repeat 1 59 0 1 909 23 0 0 0 chr3 42570120 42570143 -117029640 + AT_rich Low_complexity Low_complexity 1 23 0 1 909 264 127 0 0 chr3 42570856 42570911 -117028872 + (TCTCTG)n Simple_repeat Simple_repeat 4 58 0 1 909 1600 322 47 22 chr3 42570911 42571547 -117028236 - Lx8 LINE L1 -93 7380 6729 1 909 2171 187 13 38 chr3 42572032 42572510 -117027273 + RLTR31_Mm LTR ERVK 1 466 -95 1 909 27 0 0 0 chr3 42572618 42572645 -117027138 + AT_rich Low_complexity Low_complexity 1 27 0 1 909 1294 171 11 26 chr3 42573034 42573299 -117026484 - Lx3A LINE L1 -1 6980 6720 1 909 953 93 0 0 chr3 42573314 42573453 -117026330 + L1_Mus2 LINE L1 6428 6566 0 1 909 615 335 27 6 chr3 42573523 42573706 -117026077 - ID_B1 SINE B4 -32 192 6 1 909 995 222 195 30 chr3 42573856 42574084 -117025699 + MT2A LTR ERVL 70 349 -184 1 909 1076 94 0 0 chr3 42574084 42574222 -117025561 + B1_Mm SINE Alu 1 138 -9 1 909 402 21 0 0 chr3 42574222 42574269 -117025514 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 1 909 995 222 195 30 chr3 42574269 42574373 -117025410 + MT2A LTR ERVL 350 457 -76 1 909 589 136 102 0 chr3 42574379 42574497 -117025286 - URR1B DNA MER1_type -28 197 68 1 909 2026 133 26 3 chr3 42575980 42576320 -117023463 - Lx LINE L1 -5 6649 6302 1 909 2550 85 29 0 chr3 42576321 42576663 -117023120 + Lx LINE L1 5945 6296 -358 1 909 663 315 20 10 chr3 42576702 42576904 -117022879 - B4A SINE B4 -80 212 9 1 909 230 159 0 0 chr3 42580117 42580161 -117019622 + A-rich Low_complexity Low_complexity 1 44 0 1 909 313 294 127 9 chr3 42580161 42580271 -117019512 + B4 SINE B4 107 229 -63 1 909 205 182 0 0 chr3 42580271 42580304 -117019479 + A-rich Low_complexity Low_complexity 3 35 0 1 909 26 30 0 0 chr3 42580843 42580876 -117018907 + AT_rich Low_complexity Low_complexity 1 33 0 1 909 202 295 0 37 chr3 42582315 42582396 -117017387 + (TATATG)n Simple_repeat Simple_repeat 2 79 0 1 909 669 66 0 0 chr3 42582895 42582986 -117016797 + (GGA)n Simple_repeat Simple_repeat 1 91 0 1 909 709 275 81 16 chr3 42583382 42583630 -117016153 - L1M2 LINE L1 -673 5627 5364 1 909 5362 83 10 1 chr3 42583865 42585007 -117014776 + L1Md_F2 LINE L1 5145 6642 -366 1 909 6469 68 0 5 chr3 42585009 42585841 -117013942 + L1Md_F2 LINE L1 5744 6571 -11 1 909 453 189 0 0 chr3 42585879 42585974 -117013809 + (TA)n Simple_repeat Simple_repeat 1 95 0 1 909 21 36 0 0 chr3 42585998 42586026 -117013757 + AT_rich Low_complexity Low_complexity 1 28 0 1 909 937 122 0 0 chr3 42586212 42586343 -117013440 + B1_Mus2 SINE Alu 2 132 -15 1 909 501 58 0 0 chr3 42586344 42586413 -117013370 + (GA)n Simple_repeat Simple_repeat 1 69 0 1 909 501 47 0 0 chr3 42587243 42587307 -117012476 + (TG)n Simple_repeat Simple_repeat 1 64 0 1 909 672 137 0 0 chr3 42587307 42587446 -117012337 + (GA)n Simple_repeat Simple_repeat 2 140 0 1 909 23 0 0 0 chr3 42588056 42588079 -117011704 + AT_rich Low_complexity Low_complexity 1 23 0 1 909 427 270 18 101 chr3 42588274 42588443 -117011340 + RSINE1 SINE B4 11 165 0 1 909 23 0 0 0 chr3 42588553 42588576 -117011207 + AT_rich Low_complexity Low_complexity 1 23 0 1 909 307 335 68 37 chr3 42588586 42588747 -117011036 + HAL1-3A_ME LINE L1 2284 2449 -409 1 909 651 195 0 8 chr3 42589014 42589133 -117010650 + L1_Mur3 LINE L1 1749 1866 -4014 1 909 9427 200 77 13 chr3 42589388 42590549 -117009234 + L1_Mur2 LINE L1 784 2054 -3823 1 909 426 20 0 0 chr3 42590549 42590600 -117009183 + (CA)n Simple_repeat Simple_repeat 2 52 0 1 909 9427 182 40 14 chr3 42590600 42591818 -117007965 + L1_Mur2 LINE L1 2055 3304 -2573 1 909 1518 191 103 46 chr3 42591831 42592221 -117007562 + Lx5 LINE L1 6639 7050 0 1 909 367 111 0 60 chr3 42592344 42592411 -117007372 - L1_Mus3 LINE L1 -889 4994 4932 1 909 7378 115 9 1 chr3 42592400 42594018 -117005765 + L1_Mus3 LINE L1 5011 6638 0 1 909 796 319 65 54 chr3 42594296 42594702 -117005081 + MTE2a LTR MaLR 3 405 -14 1 909 189 0 0 0 chr3 42594729 42594750 -117005033 + (TAA)n Simple_repeat Simple_repeat 3 23 0 1 909 560 339 68 49 chr3 42595850 42596114 -117003669 - MamSINE1 SINE tRNA -7 283 15 1 909 348 24 0 0 chr3 42597204 42597245 -117002538 + (TTAA)n Simple_repeat Simple_repeat 4 44 0 1 909 789 264 24 55 chr3 42597245 42597490 -117002293 - Lx6 LINE L1 -44 7416 7179 1 909 21 0 0 0 chr3 42598047 42598068 -117001715 + AT_rich Low_complexity Low_complexity 1 21 0 1 910 406 324 168 39 chr3 42598633 42599015 -117000768 + MLT1D LTR MaLR 72 502 -3 1 910 183 42 0 0 chr3 42600344 42600368 -116999415 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 1 910 11632 153 8 3 chr3 42600393 42603336 -116996447 + L1_Mus4 LINE L1 3672 6636 0 1 910 482 304 33 20 chr3 42604706 42604857 -116994926 + RSINE1 SINE B4 13 165 0 1 910 619 240 14 0 chr3 42604859 42605149 -116994634 + (CA)n Simple_repeat Simple_repeat 1 294 0 1 910 31 68 0 0 chr3 42605222 42605281 -116994502 + AT_rich Low_complexity Low_complexity 1 59 0 1 910 21 0 0 0 chr3 42605864 42605885 -116993898 + AT_rich Low_complexity Low_complexity 1 21 0 1 910 8616 112 41 25 chr3 42605926 42606949 -116992834 - Lx3A LINE L1 -3 6978 5912 1 910 795 21 0 0 chr3 42606949 42607042 -116992741 + (TTCC)n Simple_repeat Simple_repeat 4 96 0 1 910 8616 83 4 9 chr3 42607042 42607848 -116991935 - Lx3A LINE L1 -1070 5911 5135 1 910 717 370 48 36 chr3 42607888 42608449 -116991334 - Lx8 LINE L1 -65 7408 6841 1 910 270 0 0 0 chr3 42608935 42608965 -116990818 + (T)n Simple_repeat Simple_repeat 1 30 0 1 910 208 274 0 0 chr3 42611538 42611589 -116988194 + CT-rich Low_complexity Low_complexity 1 51 0 1 910 1038 223 9 4 chr3 42613022 42613247 -116986536 - URR1A DNA MER1_type 0 226 1 1 910 424 68 27 0 chr3 42613341 42613414 -116986369 + (CAAAA)n Simple_repeat Simple_repeat 5 79 0 1 910 30 27 0 0 chr3 42613435 42613472 -116986311 + AT_rich Low_complexity Low_complexity 1 37 0 1 910 203 133 22 22 chr3 42614167 42614213 -116985570 + (TA)n Simple_repeat Simple_repeat 2 47 0 1 910 207 88 29 0 chr3 42615724 42615758 -116984025 + (TC)n Simple_repeat Simple_repeat 2 36 0 1 910 447 312 67 46 chr3 42616472 42616667 -116983116 - MER21B LTR ERV1 -504 359 161 1 910 578 14 14 0 chr3 42617301 42617372 -116982411 + (TAGA)n Simple_repeat Simple_repeat 3 74 0 1 910 474 222 0 0 chr3 42617390 42617480 -116982303 + B1_Mm SINE Alu 57 146 -1 1 910 277 335 35 106 chr3 42617482 42617510 -116982273 + B4 SINE B4 72 184 -108 1 910 781 203 0 0 chr3 42617510 42617643 -116982140 + B1_Mus2 SINE Alu 9 141 -6 1 910 216 194 38 28 chr3 42617656 42617762 -116982021 + GA-rich Low_complexity Low_complexity 3 109 0 1 910 223 403 39 8 chr3 42618573 42618703 -116981080 + RSINE1 SINE B4 28 161 -4 1 910 532 200 14 0 chr3 42618705 42618845 -116980938 + (TA)n Simple_repeat Simple_repeat 1 142 0 1 910 469 333 15 60 chr3 42618940 42619141 -116980642 + MER20 DNA MER1_type 28 219 0 1 910 683 62 10 0 chr3 42619346 42619443 -116980340 + (TA)n Simple_repeat Simple_repeat 2 99 0 1 910 597 322 89 15 chr3 42619933 42620218 -116979565 + MTE-int LTR MaLR 69 407 -1173 1 910 1399 247 71 39 chr3 42620297 42620833 -116978950 - RLTR31_Mur LTR ERVK 0 553 1 1 910 1087 216 5 0 chr3 42620944 42621148 -116978635 - ORR1C1 LTR MaLR 0 378 174 1 910 3642 103 31 15 chr3 42621158 42621701 -116978082 + L1_Mus4 LINE L1 5714 6265 -371 1 910 273 105 0 0 chr3 42621679 42621717 -116978066 + Lx2 LINE L1 6820 6857 -140 1 910 3401 94 17 0 chr3 42621710 42622180 -116977603 - L1_Mus4 LINE L1 -178 6458 5981 1 910 399 273 80 49 chr3 42622180 42622342 -116977441 - MTE-int LTR MaLR -627 953 787 1 910 362 291 21 27 chr3 42622442 42622558 -116977225 - MTEb LTR MaLR -39 380 256 1 910 3497 84 2 20 chr3 42622590 42623077 -116976706 - L1Md_F2 LINE L1 -23 6559 6082 1 910 244 367 53 26 chr3 42623088 42623239 -116976544 - MTEb LTR MaLR -164 195 41 1 910 1086 360 145 22 chr3 42623256 42624154 -116975629 + MTE-int LTR MaLR 389 1396 -184 1 910 1991 123 46 44 chr3 42624154 42624520 -116975263 - IAPLTR1_Mm LTR ERVK 0 367 1 1 910 56898 16 7 4 chr3 42624520 42630971 -116968812 - IAPEz-int LTR ERVK 0 6481 8 1 910 1991 123 46 44 chr3 42630971 42631337 -116968446 - IAPLTR1_Mm LTR ERVK 0 367 1 1 910 408 230 40 10 chr3 42631337 42631438 -116968345 + MTE-int LTR MaLR 1391 1494 -86 1 910 250 200 0 0 chr3 42631518 42631568 -116968215 - MT2A LTR ERVL -483 50 1 1 910 1351 295 32 36 chr3 42631762 42632202 -116967581 + Lx6 LINE L1 7014 7451 -9 1 910 289 304 102 42 chr3 42632316 42632601 -116967182 - Lx9 LINE L1 -27 7617 7316 1 910 2301 199 141 24 chr3 42633835 42634432 -116965351 + Lx4B LINE L1 5926 6894 -802 1 910 1551 198 43 9 chr3 42635133 42635459 -116964324 + Lx4B LINE L1 6577 6913 -145 1 910 519 17 0 0 chr3 42635459 42635519 -116964264 + (TAGA)n Simple_repeat Simple_repeat 2 61 0 1 910 615 251 56 46 chr3 42635679 42635875 -116963908 + MTEb LTR MaLR 6 203 -176 1 910 686 280 37 19 chr3 42635851 42636066 -116963717 - RMER5 LTR ERV1 -4 530 312 2 910 914 269 137 32 chr3 42636071 42636443 -116963340 + MTD LTR MaLR 9 419 0 2 910 492 214 19 0 chr3 42636904 42637007 -116962776 + RLTR18B LTR ERVK 1 105 -407 2 910 323 172 17 0 chr3 42637026 42637084 -116962699 + RLTR18B LTR ERVK 220 278 -234 2 910 1119 108 6 0 chr3 42637202 42637360 -116962423 + B2_Mm1a SINE B2 2 160 -33 2 910 432 0 0 0 chr3 42637360 42637408 -116962375 + (TAAA)n Simple_repeat Simple_repeat 3 50 0 2 910 647 278 0 160 chr3 42637472 42637660 -116962123 - RSINE1 SINE B4 0 165 8 2 910 437 312 21 83 chr3 42637723 42637915 -116961868 + B3A SINE B2 12 191 -7 2 910 323 364 24 10 chr3 42637938 42638146 -116961637 + L1M4 LINE L1 3699 3909 -2237 2 910 204 40 0 0 chr3 42638215 42638240 -116961543 + (A)n Simple_repeat Simple_repeat 1 25 0 2 910 2697 135 7 12 chr3 42638243 42638670 -116961113 + Lx3A LINE L1 6539 6963 -18 2 910 1150 47 0 0 chr3 42638664 42638813 -116960970 + L1Md_F2 LINE L1 6422 6570 -12 2 910 24 32 0 0 chr3 42638836 42638867 -116960916 + AT_rich Low_complexity Low_complexity 1 31 0 2 910 738 293 5 14 chr3 42639550 42639768 -116960015 + B3 SINE B2 1 216 0 2 910 1025 180 38 5 chr3 42640175 42640387 -116959396 - RMER6D LTR ERVK -139 581 363 2 910 393 177 0 0 chr3 42640387 42640466 -116959317 + (CA)n Simple_repeat Simple_repeat 2 80 0 2 910 341 145 43 14 chr3 42640467 42640537 -116959246 - RMER6D LTR ERVK -369 351 280 2 910 206 282 8 33 chr3 42640655 42640776 -116959007 + (TCTCTG)n Simple_repeat Simple_repeat 3 120 0 2 910 1511 170 0 23 chr3 42640921 42641186 -116958597 - RMER6D LTR ERVK -461 259 1 2 910 4146 149 40 17 chr3 42641223 42641947 -116957836 - Lx LINE L1 -14 6640 5900 2 910 216 0 0 0 chr3 42641978 42642002 -116957781 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 2 910 6474 61 2 14 chr3 42643237 42644088 -116955695 + L1Md_F2 LINE L1 5742 6582 0 2 910 231 140 0 17 chr3 42644088 42644146 -116955637 + L1Md_F2 LINE L1 6475 6531 -51 2 910 883 294 163 62 chr3 42645314 42645640 -116954143 - ORR1E LTR MaLR -11 373 18 2 910 486 88 0 0 chr3 42645725 42645793 -116953990 + (TAAA)n Simple_repeat Simple_repeat 2 69 0 2 910 2677 155 198 3 chr3 42645793 42646092 -116953691 - RMER6C LTR ERVK -1 689 357 2 910 225 0 0 0 chr3 42646092 42646117 -116953666 + (TC)n Simple_repeat Simple_repeat 2 26 0 2 910 2677 155 198 3 chr3 42646117 42646393 -116953390 - RMER6C LTR ERVK -334 356 2 2 910 279 0 0 0 chr3 42646732 42646763 -116953020 + (TTC)n Simple_repeat Simple_repeat 1 31 0 2 910 356 0 23 0 chr3 42646763 42646807 -116952976 + (TTA)n Simple_repeat Simple_repeat 1 45 0 2 910 648 355 12 0 chr3 42646807 42646976 -116952807 - B4 SINE B4 -117 175 5 2 910 20445 60 3 1 chr3 42648101 42651473 -116948310 - L1Md_F3 LINE L1 -2 6582 3203 2 910 4998 95 24 17 chr3 42651464 42652922 -116946861 - L1Md_F3 LINE L1 -4011 1872 449 2 910 27 0 0 0 chr3 42653302 42653329 -116946454 + AT_rich Low_complexity Low_complexity 1 27 0 2 910 382 320 7 32 chr3 42653335 42653490 -116946293 - RSINE1 SINE B4 -13 152 2 2 910 224 0 65 0 chr3 42653504 42653535 -116946248 + (CAAAA)n Simple_repeat Simple_repeat 2 34 0 2 910 32 0 0 0 chr3 42653829 42653861 -116945922 + AT_rich Low_complexity Low_complexity 1 32 0 2 910 400 141 40 17 chr3 42653998 42654171 -116945612 + (TCTA)n Simple_repeat Simple_repeat 4 180 0 2 910 261 237 0 0 chr3 42654194 42654253 -116945530 + (TG)n Simple_repeat Simple_repeat 2 60 0 2 910 486 343 5 0 chr3 42654253 42654451 -116945332 - Lx9 LINE L1 -186 7458 7260 2 910 430 349 21 1 chr3 42655524 42655781 -116944002 - Lx7 LINE L1 -1950 5746 5497 2 910 28 48 0 0 chr3 42656195 42656237 -116943546 + AT_rich Low_complexity Low_complexity 1 42 0 2 910 488 171 216 25 chr3 42656237 42656399 -116943384 - Lx9 LINE L1 -70 7574 7382 2 910 424 210 12 24 chr3 42656402 42656485 -116943298 + Lx9 LINE L1 7178 7259 -385 2 910 1638 203 11 64 chr3 42656678 42657036 -116942747 + ORR1B1 LTR MaLR 41 379 -15 2 910 438 20 0 0 chr3 42658009 42658060 -116941723 + (GAAA)n Simple_repeat Simple_repeat 2 52 0 2 910 252 0 0 0 chr3 42658865 42658893 -116940890 + (TC)n Simple_repeat Simple_repeat 2 29 0 2 910 216 0 0 0 chr3 42658893 42658916 -116940867 + (TA)n Simple_repeat Simple_repeat 1 24 0 2 910 189 0 0 0 chr3 42658916 42658936 -116940847 + (GA)n Simple_repeat Simple_repeat 2 22 0 2 910 216 279 100 12 chr3 42659624 42659704 -116940079 - L2b LINE L2 -7 3368 3282 2 910 4098 52 3 0 chr3 42660383 42660915 -116938868 + L1Md_F2 LINE L1 5551 6085 -497 2 910 212 175 0 0 chr3 42660923 42660963 -116938820 - B3A SINE B2 -158 40 1 2 910 515 279 91 21 chr3 42661343 42661530 -116938253 - RCHARR1 DNA MER1_type -3 971 772 2 910 3175 76 2 0 chr3 42661621 42662044 -116937739 + L1Md_T LINE L1 6159 6582 0 2 910 263 320 99 57 chr3 42662310 42662522 -116937261 - MER21B LTR ERV1 -268 595 375 2 910 398 364 53 21 chr3 42662336 42662524 -116937259 - MER68 LTR ERVL -6 557 364 2 910 215 267 49 85 chr3 42663006 42663088 -116936695 - B4 SINE B4 -172 120 42 2 910 326 303 97 12 chr3 42663295 42663552 -116936231 - HAL1 LINE L1 -1004 1503 1225 2 910 1028 109 0 0 chr3 42663638 42663785 -116935998 + B1_Mus1 SINE Alu 2 148 0 2 910 391 290 48 16 chr3 42664999 42665125 -116934658 + B1_Mur3 SINE Alu 18 147 -2 2 910 480 325 56 12 chr3 42665229 42665391 -116934392 + ID_B1 SINE B4 56 224 0 2 910 405 39 0 0 chr3 42665412 42665463 -116934320 + (GGAA)n Simple_repeat Simple_repeat 3 53 0 2 910 22 88 0 0 chr3 42665566 42665623 -116934160 + AT_rich Low_complexity Low_complexity 1 57 0 2 910 662 167 6 0 chr3 42665718 42665874 -116933909 + GA-rich Low_complexity Low_complexity 2 158 0 2 910 1109 295 31 83 chr3 42665921 42666305 -116933478 - ORR1D2 LTR MaLR -6 364 1 2 910 350 246 24 81 chr3 42666306 42666381 -116933402 - ORR1D2-int LTR MaLR -1 1369 1298 2 910 1810 186 101 3 chr3 42666381 42666736 -116933047 + ORR1B1 LTR MaLR 1 390 -4 2 910 350 246 24 81 chr3 42666736 42666784 -116932999 - ORR1D2-int LTR MaLR -73 1297 1253 2 910 3257 146 0 4 chr3 42666792 42667302 -116932481 - Lx LINE L1 -3 6651 6144 2 910 8591 170 35 4 chr3 42667302 42667698 -116932085 + Lx LINE L1 4224 4638 -1239 2 910 234 0 0 0 chr3 42667698 42667724 -116932059 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 2 910 8591 151 32 7 chr3 42667724 42668947 -116930836 + Lx LINE L1 4639 5895 -759 2 910 2638 41 22 66 chr3 42668947 42669309 -116930474 - ORR1A0 LTR MaLR 0 346 1 2 910 3777 92 22 13 chr3 42669309 42669546 -116930237 + Lx LINE L1 5896 6142 -512 2 910 2527 178 38 12 chr3 42670499 42671004 -116928779 + Lx LINE L1 6136 6653 -1 2 910 553 209 216 0 chr3 42672522 42672759 -116927024 - Lx9 LINE L1 -195 7449 7162 2 910 537 110 0 0 chr3 42672777 42672859 -116926924 + (TA)n Simple_repeat Simple_repeat 1 82 0 2 910 26 30 0 0 chr3 42672893 42672926 -116926857 + AT_rich Low_complexity Low_complexity 1 33 0 2 910 534 206 14 81 chr3 42673953 42674101 -116925682 - RLTR25B LTR ERVK -2 1101 964 2 910 4316 165 8 33 chr3 42674070 42674859 -116924924 - RLTR25B LTR ERVK -253 775 7 2 910 2249 241 83 46 chr3 42674908 42675597 -116924186 + Lx5 LINE L1 5043 5756 -121 2 910 1079 265 32 25 chr3 42675601 42675968 -116923815 + Lx5 LINE L1 5992 6408 -642 2 910 408 324 26 78 chr3 42676681 42676835 -116922948 + RSINE1 SINE B4 18 163 -2 2 910 1810 213 54 15 chr3 42676868 42677277 -116922506 + Lx5 LINE L1 6617 7041 -9 2 910 26 0 0 0 chr3 42678267 42678293 -116921490 + AT_rich Low_complexity Low_complexity 1 26 0 2 910 195 338 39 13 chr3 42678340 42678418 -116921365 + L3 LINE CR1 4006 4085 -404 2 910 519 17 0 0 chr3 42678672 42678732 -116921051 + (TC)n Simple_repeat Simple_repeat 1 60 0 2 910 2202 271 43 50 chr3 42678732 42679536 -116920247 - Lx9 LINE L1 -164 7480 6682 2 910 859 269 137 41 chr3 42679596 42679960 -116919823 - Lx9 LINE L1 -1086 6558 6160 2 910 344 246 100 17 chr3 42680034 42680154 -116919629 - Lx9 LINE L1 -1639 6005 5876 2 910 1580 181 23 7 chr3 42681185 42681486 -116918297 + Lx3B LINE L1 6667 6972 -1 2 910 423 98 0 0 chr3 42681790 42681851 -116917932 + (TG)n Simple_repeat Simple_repeat 2 62 0 2 910 761 259 46 20 chr3 42681867 42682064 -116917719 - B4 SINE B4 -35 257 56 2 910 2567 166 69 51 chr3 42682290 42682856 -116916927 + RMER6-int LTR ERVK 10 585 -2592 2 910 2499 206 61 52 chr3 42682846 42683516 -116916267 + RMER6-int LTR ERVK 2502 3177 0 2 910 2589 202 142 3 chr3 42683516 42684062 -116915721 + RMER6D LTR ERVK 1 618 -102 2 910 215 31 31 0 chr3 42684062 42684094 -116915689 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 2 910 2589 202 142 3 chr3 42684094 42684176 -116915607 + RMER6D LTR ERVK 619 715 -5 2 910 307 241 25 0 chr3 42684183 42684262 -116915521 - Lx9 LINE L1 -924 4923 4843 2 910 350 179 92 31 chr3 42684308 42684435 -116915348 - RMER6C LTR ERVK -9 747 606 2 910 1988 218 107 67 chr3 42684470 42685304 -116914479 - RMER6C LTR ERVK 0 720 1 2 910 6735 41 2 14 chr3 42685432 42686275 -116913508 - L1Md_F3 LINE L1 0 6584 5752 2 910 1122 48 0 0 chr3 42686275 42686420 -116913363 + L1_Mm LINE L1 4526 4670 -1213 2 910 234 0 0 0 chr3 42686462 42686488 -116913295 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 2 910 321 349 41 56 chr3 42686497 42686694 -116913089 + B3A SINE B2 2 195 -3 2 910 638 348 45 62 chr3 42686775 42687066 -116912717 + B4 SINE B4 6 291 -1 2 910 198 156 0 0 chr3 42687088 42687133 -116912650 + GA-rich Low_complexity Low_complexity 2 46 0 2 910 946 226 98 33 chr3 42687252 42687559 -116912224 + RLTR15 LTR ERVK 1 327 -32 2 910 183 103 67 33 chr3 42688012 42688072 -116911711 + (CAGA)n Simple_repeat Simple_repeat 2 63 0 2 910 233 29 29 0 chr3 42688074 42688108 -116911675 + (CA)n Simple_repeat Simple_repeat 2 36 0 2 910 184 292 13 77 chr3 42689116 42689194 -116910589 - MIRb SINE MIR -72 196 124 2 910 381 215 0 0 chr3 42689843 42689936 -116909847 + (TA)n Simple_repeat Simple_repeat 2 94 0 2 910 230 344 65 50 chr3 42690034 42690233 -116909550 + LTR78 LTR ERV1 176 377 -927 2 910 931 238 129 32 chr3 42690694 42691057 -116908726 + MTD LTR MaLR 20 405 -14 2 910 304 295 93 110 chr3 42691059 42691131 -116908652 + MTD-int LTR MaLR 3 63 -1195 2 910 793 74 0 8 chr3 42691131 42691254 -116908529 - L1_Mus2 LINE L1 -1 6565 6444 2 910 304 295 93 110 chr3 42691254 42691417 -116908366 + MTD-int LTR MaLR 64 234 -1024 2 910 207 0 0 0 chr3 42691420 42691443 -116908340 + (A)n Simple_repeat Simple_repeat 1 23 0 2 910 333 0 0 0 chr3 42691825 42691862 -116907921 + (TG)n Simple_repeat Simple_repeat 2 38 0 2 910 234 91 0 0 chr3 42692537 42692570 -116907213 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 2 910 500 292 91 10 chr3 42693358 42693555 -116906228 - B3 SINE B2 0 216 4 2 910 648 267 0 47 chr3 42694096 42694265 -116905518 - RSINE1 SINE B4 -1 164 4 2 910 2577 90 8 3 chr3 42694944 42695312 -116904471 - L1_Mus2 LINE L1 0 6566 6197 3 910 330 360 87 48 chr3 42695459 42695481 -116904302 - B4A SINE B4 -74 218 197 3 910 2011 179 50 3 chr3 42695481 42695857 -116903926 + ORR1B1 LTR MaLR 1 394 0 3 910 330 360 87 48 chr3 42695857 42696041 -116903742 - B4A SINE B4 -96 196 4 3 910 1659 50 9 5 chr3 42701043 42701266 -116898517 - L1Md_F2 LINE L1 0 6582 6359 3 910 682 228 20 40 chr3 42701747 42701948 -116897835 - B3A SINE B2 0 198 2 3 910 414 0 0 0 chr3 42702871 42702917 -116896866 + (GA)n Simple_repeat Simple_repeat 1 46 0 3 910 1665 197 73 30 chr3 42703180 42703552 -116896231 - ORR1B1 LTR MaLR 0 394 7 3 910 275 164 16 0 chr3 42704813 42704874 -116894909 + (TATATG)n Simple_repeat Simple_repeat 1 62 0 3 910 341 255 74 11 chr3 42706165 42706260 -116893523 - PB1D10 SINE Alu -6 111 11 3 910 372 276 0 31 chr3 42706179 42706276 -116893507 - ID_B1 SINE B4 -52 172 79 3 910 765 352 30 4 chr3 42710579 42710847 -116888936 + B4 SINE B4 16 290 -2 3 910 677 195 8 0 chr3 42710852 42710975 -116888808 + ORR1D1 LTR MaLR 1 124 -250 3 910 279 179 0 0 chr3 42711449 42711516 -116888267 + (CA)n Simple_repeat Simple_repeat 2 68 0 3 910 303 113 0 0 chr3 42711515 42711568 -116888215 + (GA)n Simple_repeat Simple_repeat 2 54 0 3 910 32 0 0 0 chr3 42711790 42711822 -116887961 + AT_rich Low_complexity Low_complexity 1 32 0 3 910 233 105 69 17 chr3 42712747 42712805 -116886978 + (TA)n Simple_repeat Simple_repeat 1 61 0 3 910 219 88 0 0 chr3 42712805 42712839 -116886944 + (TG)n Simple_repeat Simple_repeat 2 35 0 3 910 251 157 66 22 chr3 42713796 42713887 -116885896 + (TCTCTG)n Simple_repeat Simple_repeat 2 96 0 3 910 1629 185 116 57 chr3 42713897 42714356 -116885427 - RMER2 LTR ERV1 -8 559 74 3 910 1022 291 23 7 chr3 42714363 42714664 -116885119 - Lx6 LINE L1 -844 6616 6311 3 910 25 0 0 0 chr3 42715392 42715417 -116884366 + AT_rich Low_complexity Low_complexity 1 25 0 3 910 258 308 0 21 chr3 42715633 42715806 -116883977 + (CATATA)n Simple_repeat Simple_repeat 1 169 0 3 910 525 152 38 40 chr3 42716547 42716687 -116883096 - ORR1C1 LTR MaLR -251 127 3 3 910 282 369 0 10 chr3 42716846 42716950 -116882833 - B4A SINE B4 0 292 190 3 910 974 204 55 55 chr3 42717270 42717597 -116882186 - RMER17C LTR ERVK 0 410 84 3 910 693 36 0 0 chr3 42717597 42717681 -116882102 + (GGGAGA)n Simple_repeat Simple_repeat 5 88 0 3 910 1247 84 6 0 chr3 42717681 42717859 -116881924 + (GAA)n Simple_repeat Simple_repeat 1 179 0 3 910 233 66 37 73 chr3 42718892 42718974 -116880809 + A-rich Low_complexity Low_complexity 2 80 0 3 910 1786 185 95 29 chr3 42719156 42719568 -116880215 - RMER10A LTR ERVL 0 442 4 3 910 365 198 48 36 chr3 42721533 42721617 -116878166 - ID_B1 SINE B4 -52 172 88 3 910 3506 125 7 18 chr3 42722304 42722875 -116876908 - Lx2 LINE L1 0 6997 6433 3 910 307 41 41 0 chr3 42723811 42723860 -116875923 + (TTG)n Simple_repeat Simple_repeat 1 51 0 3 910 216 67 0 0 chr3 42723861 42723891 -116875892 + (TGG)n Simple_repeat Simple_repeat 1 30 0 3 910 885 125 0 12 chr3 42724062 42724224 -116875559 + Lx LINE L1 6495 6654 0 3 910 1217 262 97 0 chr3 42724513 42724852 -116874931 + MTD LTR MaLR 45 416 -3 3 910 237 349 52 11 chr3 42724920 42725111 -116874672 - L1MC4 LINE L1 -492 7550 7352 3 910 7149 63 33 2 chr3 42725909 42727073 -116872710 - L1Md_F2 LINE L1 0 6582 5374 3 910 2319 117 48 23 chr3 42727073 42727467 -116872316 - Lx LINE L1 -15 6639 6236 3 910 1350 110 146 0 chr3 42727467 42727686 -116872097 + Lx LINE L1 5974 6224 -430 3 113 1619 288 16 16 chr3 42729143 42729584 -116870199 - Lx5 LINE L1 -23 7027 6587 3 911 679 145 8 0 chr3 42729631 42729755 -116870028 + L1_Mur2 LINE L1 4324 4448 -1429 3 911 2954 71 10 18 chr3 42729816 42730023 -116869760 - MTB LTR MaLR 0 400 196 3 911 882 19 0 0 chr3 42730023 42730127 -116869656 + (TTTC)n Simple_repeat Simple_repeat 2 105 0 3 911 1036 74 0 0 chr3 42730128 42730263 -116869520 - B1_Mus2 SINE Alu -12 135 1 3 911 2954 71 10 18 chr3 42730263 42730454 -116869329 - MTB LTR MaLR -205 195 3 3 911 26 50 0 0 chr3 42730640 42730680 -116869103 + AT_rich Low_complexity Low_complexity 1 40 0 3 911 279 0 0 0 chr3 42730868 42730899 -116868884 + (CA)n Simple_repeat Simple_repeat 2 32 0 3 911 360 64 0 0 chr3 42730899 42730945 -116868838 + (TA)n Simple_repeat Simple_repeat 1 47 0 3 911 282 184 0 0 chr3 42731922 42731971 -116867812 - HAL1 LINE L1 -13 2494 2446 3 911 229 130 65 0 chr3 42732915 42732961 -116866822 + T-rich Low_complexity Low_complexity 6 54 0 3 911 289 326 54 0 chr3 42732990 42733137 -116866646 - L1MC LINE L1 -714 5630 5476 3 911 336 296 137 21 chr3 42733180 42733370 -116866413 - L1MC LINE L1 -769 5377 5166 3 911 339 282 24 0 chr3 42733878 42733963 -116865820 - MTE2b LTR MaLR -292 87 1 3 911 22 0 0 0 chr3 42734249 42734271 -116865512 + AT_rich Low_complexity Low_complexity 1 22 0 3 911 30 0 0 0 chr3 42734296 42734326 -116865457 + AT_rich Low_complexity Low_complexity 1 30 0 3 911 389 331 59 6 chr3 42735019 42735189 -116864594 - B3A SINE B2 -16 182 4 3 911 26 50 0 0 chr3 42735441 42735481 -116864302 + AT_rich Low_complexity Low_complexity 1 40 0 3 911 901 189 120 20 chr3 42735661 42735861 -116863922 - URR1A DNA MER1_type -6 220 1 3 911 1565 195 26 7 chr3 42735861 42736171 -116863612 + MTC LTR MaLR 104 419 -2 3 911 579 322 132 10 chr3 42736175 42736479 -116863304 + MT2A LTR ERVL 193 533 0 3 911 366 85 0 0 chr3 42736975 42737034 -116862749 + (CAGA)n Simple_repeat Simple_repeat 2 60 0 3 911 28 0 0 0 chr3 42737087 42737115 -116862668 + AT_rich Low_complexity Low_complexity 1 28 0 3 911 2316 143 26 16 chr3 42737732 42738435 -116861348 - RMER17D2 LTR ERVK 0 809 1 3 911 630 0 0 0 chr3 42739049 42739119 -116860664 + (GA)n Simple_repeat Simple_repeat 1 70 0 3 911 221 185 0 53 chr3 42739236 42739293 -116860490 + (CATATA)n Simple_repeat Simple_repeat 3 56 0 3 911 692 326 84 48 chr3 42740906 42741344 -116858439 + MTE2a-int LTR MaLR 3 456 -1124 3 911 228 268 67 44 chr3 42741332 42741422 -116858361 + MTE2a-int LTR MaLR 983 1074 -506 3 911 640 278 115 31 chr3 42741425 42741754 -116858029 + RMER13A LTR ERVK 184 558 -350 3 911 230 281 10 92 chr3 42741897 42741995 -116857788 + MTE2a-int LTR MaLR 1491 1580 0 3 911 305 303 5 171 chr3 42741997 42742184 -116857599 + MTE2a LTR MaLR 3 158 -221 3 911 493 276 75 25 chr3 42742288 42742448 -116857335 + MTE2a LTR MaLR 207 374 -5 3 911 1008 317 71 36 chr3 42742997 42743530 -116856253 + Lx8 LINE L1 6917 7468 -5 3 911 286 333 83 50 chr3 42743560 42743680 -116856103 + MIRm SINE MIR 153 276 0 3 911 257 283 158 16 chr3 42743862 42744052 -116855731 - Kanga2_a DNA Tc2 -48 840 624 3 911 646 216 10 1 chr3 42744310 42744459 -116855324 - ORR1C1 LTR MaLR -228 166 5 3 911 24 32 0 0 chr3 42744586 42744617 -116855166 + AT_rich Low_complexity Low_complexity 1 31 0 3 911 910 188 93 9 chr3 42744622 42744837 -116854946 + ORR1B2 LTR MaLR 127 359 -8 3 911 271 402 84 1 chr3 42745227 42745362 -116854421 - B1F SINE Alu -5 144 1 3 911 859 61 0 90 chr3 42745874 42746019 -116853764 - L1_Mus3 LINE L1 -708 5930 5799 3 911 283 322 94 40 chr3 42746109 42746258 -116853525 + RSINE1 SINE B4 3 159 -6 3 911 203 303 0 15 chr3 42746259 42746326 -116853457 + (TA)n Simple_repeat Simple_repeat 2 67 0 3 911 217 277 0 0 chr3 42747169 42747216 -116852567 + G-rich Low_complexity Low_complexity 3 49 0 3 911 549 0 0 0 chr3 42747219 42747280 -116852503 + (GA)n Simple_repeat Simple_repeat 2 62 0 3 911 27 0 0 0 chr3 42747338 42747365 -116852418 + AT_rich Low_complexity Low_complexity 1 27 0 3 911 2373 201 24 11 chr3 42748886 42749338 -116850445 - Lx5 LINE L1 -135 6915 6458 3 911 1699 203 29 148 chr3 42749338 42749824 -116849959 + RLTR23 LTR ERV1 1 428 -2 3 911 410 208 13 0 chr3 42749826 42749903 -116849880 - Lx4B LINE L1 -576 6482 6405 3 911 344 340 108 52 chr3 42750176 42750427 -116849356 - B4 SINE B4 -27 265 1 3 911 866 119 6 33 chr3 42750790 42750972 -116848811 + CT-rich Low_complexity Low_complexity 3 179 0 3 911 753 144 23 17 chr3 42750987 42751164 -116848619 + CT-rich Low_complexity Low_complexity 2 179 0 3 911 912 147 18 22 chr3 42751215 42752153 -116847630 + CT-rich Low_complexity Low_complexity 1 934 0 3 911 784 153 29 0 chr3 42752182 42752352 -116847431 + CT-rich Low_complexity Low_complexity 1 175 0 3 911 1069 108 11 0 chr3 42752357 42752533 -116847250 + (TTCTCC)n Simple_repeat Simple_repeat 3 180 0 3 911 28 79 0 0 chr3 42753150 42753213 -116846570 + AT_rich Low_complexity Low_complexity 1 63 0 3 911 2761 83 0 0 chr3 42754938 42755298 -116844485 - L1_Mus1 LINE L1 0 6567 6208 3 911 285 29 0 0 chr3 42755409 42755443 -116844340 + (TG)n Simple_repeat Simple_repeat 1 34 0 3 911 23 54 0 0 chr3 42755470 42755507 -116844276 + AT_rich Low_complexity Low_complexity 1 37 0 3 911 2906 131 0 13 chr3 42755527 42756067 -116843716 - Lx LINE L1 -1059 5938 5404 3 911 3673 193 33 0 chr3 42756067 42756756 -116843027 + Lx LINE L1 5941 6652 -2 3 911 26 0 0 0 chr3 42756789 42756815 -116842968 + AT_rich Low_complexity Low_complexity 1 26 0 3 911 454 306 68 16 chr3 42757431 42757695 -116842088 - Lx7 LINE L1 -15 5865 5586 3 911 1987 122 9 67 chr3 42757739 42758083 -116841700 - ORR1A3 LTR MaLR 0 326 3 3 911 22 0 0 0 chr3 42758397 42758419 -116841364 + AT_rich Low_complexity Low_complexity 1 22 0 3 911 270 212 45 34 chr3 42759244 42759332 -116840451 - L2a LINE L2 -4 3422 3334 3 911 22 0 0 0 chr3 42759371 42759393 -116840390 + AT_rich Low_complexity Low_complexity 1 22 0 3 911 824 271 98 81 chr3 42759422 42759791 -116839992 + MTE2a LTR MaLR 5 379 0 3 911 733 203 157 101 chr3 42760762 42760934 -116838849 - RMER17C LTR ERVK 0 410 188 3 911 486 0 0 0 chr3 42760934 42760988 -116838795 + (GA)n Simple_repeat Simple_repeat 2 55 0 3 911 733 203 157 101 chr3 42760988 42761203 -116838580 - RMER17C LTR ERVK -223 187 1 3 911 3953 43 0 0 chr3 42761654 42762143 -116837640 - L1Md_F2 LINE L1 -1134 4749 4261 3 911 6826 40 0 1 chr3 42762143 42762974 -116836809 + L1Md_F2 LINE L1 4757 5586 -297 3 911 7965 49 1 6 chr3 42762975 42763975 -116835808 + L1Md_F2 LINE L1 5588 6582 0 3 911 2940 216 65 43 chr3 42764173 42764994 -116834789 + L1_Mus2 LINE L1 265 1116 -5518 3 911 7831 16 0 0 chr3 42764994 42765884 -116833899 + L1Md_A LINE L1 5692 6581 -1 3 911 27284 123 37 6 chr3 42765884 42771195 -116828588 + L1_Mus2 LINE L1 1117 6566 0 3 911 21 36 0 0 chr3 42771255 42771283 -116828500 + AT_rich Low_complexity Low_complexity 1 28 0 3 911 24 53 0 0 chr3 42773421 42773459 -116826324 + AT_rich Low_complexity Low_complexity 1 38 0 4 911 285 100 0 0 chr3 42774034 42774084 -116825699 + (A)n Simple_repeat Simple_repeat 1 50 0 4 911 2067 246 117 17 chr3 42774716 42775201 -116824582 - Lx9 LINE L1 -11 7633 7091 4 911 5573 147 71 16 chr3 42775201 42776188 -116823595 - Lx2 LINE L1 0 6997 5957 4 911 2067 246 117 17 chr3 42776188 42776456 -116823327 - Lx9 LINE L1 -554 7090 6805 4 911 194 279 44 0 chr3 42777228 42777296 -116822487 - MIRb SINE MIR -57 211 141 4 911 235 315 44 22 chr3 42777461 42777552 -116822231 + MIR SINE MIR 44 136 -126 4 911 21 0 0 0 chr3 42777552 42777573 -116822210 + AT_rich Low_complexity Low_complexity 1 21 0 4 911 1446 301 104 21 chr3 42777702 42778383 -116821400 - MER45B DNA Tip100 -127 913 176 4 911 228 400 12 0 chr3 42778422 42778502 -116821281 - MER45B DNA Tip100 -956 84 4 4 911 440 352 140 0 chr3 42778769 42778962 -116820821 + ID_B1 SINE B4 3 222 -2 4 911 915 115 0 0 chr3 42779455 42779594 -116820189 + (TTTC)n Simple_repeat Simple_repeat 4 142 0 4 911 474 340 41 5 chr3 42780422 42780617 -116819166 - B3 SINE B2 -13 203 2 4 911 500 56 14 0 chr3 42780639 42780711 -116819072 + (TA)n Simple_repeat Simple_repeat 2 74 0 4 911 300 70 0 0 chr3 42780711 42780754 -116819029 + (TG)n Simple_repeat Simple_repeat 1 43 0 4 911 1210 307 60 35 chr3 42782288 42782514 -116817269 - Lx8 LINE L1 -3 7470 7229 4 911 272 27 27 0 chr3 42782514 42782551 -116817232 + (CAAAA)n Simple_repeat Simple_repeat 2 39 0 4 911 1210 307 60 35 chr3 42782551 42782904 -116816879 - Lx8 LINE L1 -245 7228 6876 4 911 423 0 0 0 chr3 42783555 42783602 -116816181 + (TG)n Simple_repeat Simple_repeat 1 47 0 4 911 32389 85 5 5 chr3 42784764 42790757 -116809026 - L1Md_F2 LINE L1 0 6582 593 4 911 222 118 0 0 chr3 42791273 42791307 -116808476 + (A)n Simple_repeat Simple_repeat 1 34 0 4 911 276 312 40 40 chr3 42791581 42791805 -116807978 + L1MD1 LINE L1 5783 6006 -236 4 911 569 159 104 17 chr3 42791957 42792072 -116807711 + MTC LTR MaLR 295 419 -2 4 911 245 29 29 0 chr3 42792108 42792142 -116807641 + (GAAA)n Simple_repeat Simple_repeat 2 36 0 4 911 239 382 64 0 chr3 42792186 42792296 -116807487 + PB1D10 SINE Alu 1 117 0 4 911 239 79 0 26 chr3 42792298 42792337 -116807446 + (CAAAA)n Simple_repeat Simple_repeat 3 40 0 4 911 666 239 19 19 chr3 42792453 42792611 -116807172 + Lx6 LINE L1 6922 7079 -381 4 911 2299 195 74 2 chr3 42793249 42793721 -116806062 + RMER1A Other Other 521 1026 -4 4 911 479 306 113 0 chr3 42793745 42793892 -116805891 + B3A SINE B2 2 163 -53 4 911 450 293 131 42 chr3 42794526 42795065 -116804718 - L1MA4 LINE L1 -288 6009 5405 4 911 801 98 285 7 chr3 42795131 42795275 -116804508 - B2_Mm2 SINE B2 -8 187 4 4 911 22735 101 194 10 chr3 42795440 42799014 -116800769 + L1Md_F2 LINE L1 441 4907 -976 4 911 6337 91 31 0 chr3 42799014 42799880 -116799903 - RLTR13B1 LTR ERVK 0 893 1 4 911 22735 79 242 5 chr3 42799880 42800775 -116799008 + L1Md_F2 LINE L1 4908 5798 -85 4 911 1862 0 5 0 chr3 42800775 42800991 -116798792 + L1Md_T LINE L1 6366 6582 0 4 911 22735 52 0 22 chr3 42800991 42801132 -116798651 + L1Md_F2 LINE L1 5799 5933 -651 4 911 1243 44 16 21 chr3 42801166 42801352 -116798431 + L1Md_F2 LINE L1 6397 6581 -1 4 911 5321 53 1 0 chr3 42801351 42802014 -116797769 + L1Md_F2 LINE L1 5917 6580 -2 4 911 572 0 15 0 chr3 42802085 42802153 -116797630 + (GA)n Simple_repeat Simple_repeat 2 70 0 4 911 500 160 703 5 chr3 42802827 42803021 -116796762 + RMER6D LTR ERVK 1 336 -384 4 911 3334 136 54 0 chr3 42803022 42803560 -116796223 + Lx3C LINE L1 6409 6975 -1 4 911 1257 216 25 28 chr3 42803676 42804041 -116795742 + RMER6D LTR ERVK 330 683 -7 4 911 396 0 0 0 chr3 42804256 42804300 -116795483 + (TA)n Simple_repeat Simple_repeat 2 45 0 4 911 21 71 0 0 chr3 42805954 42805996 -116793787 + AT_rich Low_complexity Low_complexity 1 42 0 4 911 474 18 0 0 chr3 42806438 42806493 -116793290 + (CA)n Simple_repeat Simple_repeat 2 56 0 4 911 583 322 81 16 chr3 42806495 42806741 -116793042 - Lx8 LINE L1 -253 7220 6959 4 911 237 279 108 48 chr3 42806753 42806836 -116792947 + ID_B1 SINE B4 108 195 -29 4 911 3462 23 2 0 chr3 42807497 42807892 -116791891 - MTA_Mm LTR MaLR 0 396 1 4 911 2160 85 7 0 chr3 42808019 42808325 -116791458 - L1_Mus2 LINE L1 -611 5955 5648 4 911 4238 69 7 115 chr3 42808325 42809013 -116790770 + L1_Mus2 LINE L1 5953 6566 0 4 911 342 0 0 0 chr3 42810072 42810110 -116789673 + (TA)n Simple_repeat Simple_repeat 2 39 0 4 911 40232 15 3 7 chr3 42810386 42816579 -116783204 - L1Md_A LINE L1 -4 6578 416 4 911 557 73 0 24 chr3 42817721 42817805 -116781978 + (TATG)n Simple_repeat Simple_repeat 1 82 0 4 911 1351 224 8 51 chr3 42818362 42818715 -116781068 + Lx2B LINE L1 6649 6986 -14 4 911 305 82 20 0 chr3 42820260 42820309 -116779474 + (TCTA)n Simple_repeat Simple_repeat 4 53 0 4 911 252 100 0 0 chr3 42821592 42821632 -116778151 + (CA)n Simple_repeat Simple_repeat 2 41 0 4 911 414 0 0 0 chr3 42823012 42823058 -116776725 + (TAA)n Simple_repeat Simple_repeat 3 48 0 4 911 207 0 0 0 chr3 42823178 42823201 -116776582 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 4 911 7240 33 0 1 chr3 42823203 42824057 -116775726 - L1Md_F3 LINE L1 -10 6574 5722 4 911 1058 89 0 0 chr3 42824880 42825015 -116774768 + B1_Mus1 SINE Alu 5 139 -9 4 911 858 45 0 0 chr3 42825041 42825151 -116774632 + B2_Mm1a SINE B2 83 192 -1 4 911 7903 58 1 0 chr3 42825207 42826881 -116772902 - L1Md_F2 LINE L1 -14 6568 4893 4 911 22 0 0 0 chr3 42827483 42827505 -116772278 + AT_rich Low_complexity Low_complexity 1 22 0 4 911 365 330 32 73 chr3 42827702 42827748 -116772035 - B3 SINE B2 -1 215 174 4 911 444 51 0 0 chr3 42827748 42827807 -116771976 + (TG)n Simple_repeat Simple_repeat 1 59 0 4 911 474 317 19 30 chr3 42827807 42827979 -116771804 - B3A SINE B2 -43 173 6 4 911 23 33 0 0 chr3 42828099 42828129 -116771654 + AT_rich Low_complexity Low_complexity 1 30 0 4 911 1747 174 0 89 chr3 42828311 42828378 -116771405 - ORR1A2 LTR MaLR 0 327 273 4 911 2917 75 25 5 chr3 42828378 42828778 -116771005 - L1_Mus1 LINE L1 0 6567 6160 4 911 1747 174 0 89 chr3 42828778 42829069 -116770714 - ORR1A2 LTR MaLR -55 272 1 4 911 212 175 0 0 chr3 42830462 42830502 -116769281 + (TTAAA)n Simple_repeat Simple_repeat 4 43 0 4 911 3661 236 36 21 chr3 42830701 42832109 -116767674 - Lx6 LINE L1 -995 6465 5036 4 911 2691 187 12 11 chr3 42832120 42832678 -116767105 - Lx6 LINE L1 -1345 4535 3977 4 911 643 332 45 8 chr3 42832675 42832939 -116766844 + Lx6 LINE L1 6491 6764 -696 4 911 275 219 16 0 chr3 42833307 42833371 -116766412 + Lx9 LINE L1 7407 7471 -173 4 911 348 24 0 0 chr3 42833371 42833412 -116766371 + (TG)n Simple_repeat Simple_repeat 2 42 0 4 911 22 35 0 0 chr3 42834218 42834247 -116765536 + AT_rich Low_complexity Low_complexity 1 29 0 4 911 192 77 0 0 chr3 42834490 42834516 -116765267 + (CATG)n Simple_repeat Simple_repeat 3 28 0 4 911 235 245 0 0 chr3 42834531 42834580 -116765203 + L1M5 LINE L1 5553 5601 -593 4 911 257 314 14 74 chr3 42834611 42834759 -116765024 + L1M5 LINE L1 5680 5818 -376 4 911 401 362 147 15 chr3 42835411 42835812 -116763971 + Lx8 LINE L1 7001 7454 -19 4 911 21 0 0 0 chr3 42835825 42835846 -116763937 + AT_rich Low_complexity Low_complexity 1 21 0 4 911 884 59 8 0 chr3 42836314 42836433 -116763350 + (TC)n Simple_repeat Simple_repeat 1 120 0 4 911 255 31 0 0 chr3 42836433 42836464 -116763319 + (CA)n Simple_repeat Simple_repeat 1 32 0 4 911 860 266 175 36 chr3 42836642 42836687 -116763096 + MTD LTR MaLR 43 89 -330 4 911 1836 163 3 7 chr3 42836687 42836996 -116762787 + RLTR10E LTR ERVK 1 308 -3 4 911 860 266 175 36 chr3 42836996 42837281 -116762502 + MTD LTR MaLR 90 419 0 4 911 503 309 195 5 chr3 42838435 42838656 -116761127 + MER2 DNA MER2_type 1 263 -82 4 911 336 102 0 0 chr3 42839997 42840046 -116759737 + (CA)n Simple_repeat Simple_repeat 2 50 0 4 911 180 0 0 0 chr3 42840166 42840186 -116759597 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 4 911 7888 152 43 1 chr3 42840717 42842558 -116757225 - Lx4A LINE L1 -748 6310 4373 4 911 510 337 48 51 chr3 42842566 42842919 -116756864 + RLTR16 LTR ERVK 23 427 -265 4 911 6334 179 27 73 chr3 42843069 42844341 -116755442 - L1_Mur2 LINE L1 -1511 4366 3160 4 911 1066 99 0 0 chr3 42844341 42844482 -116755301 - B1_Mus2 SINE Alu -6 141 1 4 911 6334 181 26 87 chr3 42844482 42844727 -116755056 - L1_Mur2 LINE L1 -2718 3168 2933 4 911 226 274 16 0 chr3 42844727 42844789 -116754994 + B4 SINE B4 2 64 -228 4 911 6334 181 26 87 chr3 42844789 42844905 -116754878 - L1_Mur2 LINE L1 -2718 2932 2820 4 911 2217 243 2 50 chr3 42844903 42845405 -116754378 - L1_Mur2 LINE L1 -6057 1029 552 4 911 333 0 0 0 chr3 42849053 42849090 -116750693 + (TTA)n Simple_repeat Simple_repeat 2 38 0 4 911 24 100 0 0 chr3 42849602 42849682 -116750101 + AT_rich Low_complexity Low_complexity 1 80 0 4 911 823 203 48 13 chr3 42849748 42849978 -116749805 - L1_Mur3 LINE L1 -593 5287 5050 4 911 1946 242 35 16 chr3 42850002 42850569 -116749214 + Lx7 LINE L1 5318 5887 -1757 4 911 3499 248 60 3 chr3 42850574 42851444 -116748339 + Lx7 LINE L1 6339 7257 -439 4 911 1758 251 22 42 chr3 42851464 42851917 -116747866 - RMER1B Other Other -587 479 36 4 911 429 262 73 49 chr3 42852033 42852238 -116747545 + Lx7 LINE L1 7487 7696 0 4 911 233 145 35 52 chr3 42852252 42852310 -116747473 + L1_Rod LINE L1 5275 5331 -516 4 911 21 57 0 0 chr3 42852668 42852703 -116747080 + AT_rich Low_complexity Low_complexity 1 35 0 4 911 2490 152 146 4 chr3 42852814 42853295 -116746488 - L1_Mus2 LINE L1 0 6566 6018 4 911 287 297 30 0 chr3 42853474 42853575 -116746208 + (TATG)n Simple_repeat Simple_repeat 4 107 0 4 911 2562 48 7 2 chr3 42853580 42853914 -116745869 - IAPEY2_LTR LTR ERVK 0 357 1 4 911 468 0 0 0 chr3 42853917 42853969 -116745814 + (TG)n Simple_repeat Simple_repeat 2 53 0 4 911 342 358 43 21 chr3 42853978 42854118 -116745665 - B3A SINE B2 -55 143 1 4 911 56 71 0 0 chr3 42854209 42854321 -116745462 + AT_rich Low_complexity Low_complexity 1 112 0 4 911 24 0 0 0 chr3 42854401 42854425 -116745358 + AT_rich Low_complexity Low_complexity 1 24 0 4 911 23 33 0 0 chr3 42854681 42854711 -116745072 + AT_rich Low_complexity Low_complexity 1 30 0 4 911 505 52 13 13 chr3 42854995 42855073 -116744710 + (TCTA)n Simple_repeat Simple_repeat 1 78 0 4 911 360 0 0 0 chr3 42855628 42855668 -116744115 + (TG)n Simple_repeat Simple_repeat 2 41 0 4 911 659 369 30 15 chr3 42855690 42855954 -116743829 - B4A SINE B4 -22 270 3 4 911 21 71 0 0 chr3 42857308 42857350 -116742433 + AT_rich Low_complexity Low_complexity 1 42 0 5 911 357 303 18 44 chr3 42857678 42857792 -116741991 - B4 SINE B4 -86 206 96 5 911 219 157 59 0 chr3 42857792 42857843 -116741940 + (TTTG)n Simple_repeat Simple_repeat 2 55 0 5 911 2886 132 9 9 chr3 42857846 42858312 -116741471 - L1_Mus3 LINE L1 0 6638 6173 5 911 2534 107 29 0 chr3 42858312 42858894 -116740889 + L1_Mus3 LINE L1 5491 6162 -420 5 912 21 36 0 0 chr3 42860883 42860911 -116738872 + AT_rich Low_complexity Low_complexity 1 28 0 5 912 11340 78 0 1 chr3 42861740 42863269 -116736514 + L1_Mm LINE L1 4120 5646 -237 5 912 1011 257 62 45 chr3 42863518 42863873 -116735910 - RMER5 LTR ERV1 -18 516 156 5 912 254 330 50 34 chr3 42864015 42864134 -116735649 + MER20 DNA MER1_type 79 199 -20 5 912 734 280 182 7 chr3 42865186 42865480 -116734303 - MTE2b LTR MaLR -3 376 32 5 912 3329 145 107 35 chr3 42865807 42866441 -116733342 - Lx4A LINE L1 -7 7051 6372 5 912 409 162 188 0 chr3 42866459 42866576 -116733207 - Lx2 LINE L1 -1 6996 6858 5 912 2773 158 14 8 chr3 42866547 42867039 -116732744 - Lx4A LINE L1 -659 6399 5905 5 912 2614 116 58 56 chr3 42867238 42867703 -116732080 - Lx LINE L1 -6 6648 6183 5 912 4816 76 19 16 chr3 42867795 42868461 -116731322 - L1Md_F2 LINE L1 -18 6564 5897 5 912 770 343 16 71 chr3 42868978 42869286 -116730497 - B4A SINE B4 -1 291 1 5 912 255 312 161 67 chr3 42869496 42869750 -116730033 - MLT1K LTR MaLR -165 430 153 5 912 320 254 87 87 chr3 42870661 42870799 -116728984 + B4 SINE B4 2 139 -153 5 912 278 299 11 84 chr3 42870849 42870944 -116728839 + RSINE1 SINE B4 78 165 0 5 912 207 100 0 0 chr3 42871003 42871033 -116728750 + (TAAG)n Simple_repeat Simple_repeat 1 30 0 5 912 341 319 33 0 chr3 42871677 42871768 -116728015 - RSINE1 SINE B4 -4 161 68 5 912 21 57 0 0 chr3 42872011 42872046 -116727737 + AT_rich Low_complexity Low_complexity 1 35 0 5 912 693 337 69 19 chr3 42872099 42872459 -116727324 + MER31A LTR ERV1 1 378 -107 5 912 510 332 133 19 chr3 42872670 42872992 -116726791 - Lx7 LINE L1 -398 7298 6940 5 912 671 93 8 0 chr3 42872993 42873111 -116726672 + (CAAAA)n Simple_repeat Simple_repeat 2 120 0 5 912 207 225 61 24 chr3 42873180 42873262 -116726521 + T-rich Low_complexity Low_complexity 1 85 0 5 912 631 227 35 0 chr3 42873384 42873525 -116726258 - Lx7 LINE L1 -812 6884 6739 5 912 268 347 133 34 chr3 42874266 42874588 -116725195 + L3 LINE CR1 3947 4300 -189 5 912 675 0 0 0 chr3 42875452 42875527 -116724256 + (TTTC)n Simple_repeat Simple_repeat 1 75 0 5 912 1032 136 0 0 chr3 42876182 42876329 -116723454 + B1_Mus1 SINE Alu 2 148 0 5 912 405 0 0 0 chr3 42876358 42876403 -116723380 + (TTA)n Simple_repeat Simple_repeat 2 46 0 5 912 3879 86 0 37 chr3 42876403 42876949 -116722834 - L1_Mus2 LINE L1 -5 6561 6036 5 912 385 0 0 0 chr3 42876949 42876997 -116722786 + L1_Mus2 LINE L1 5925 5972 -594 5 912 1063 282 50 84 chr3 42877104 42877128 -116722655 - MTE2b LTR MaLR -11 368 344 5 912 396 88 0 0 chr3 42877128 42877185 -116722598 + (CAA)n Simple_repeat Simple_repeat 2 58 0 5 912 1063 282 50 84 chr3 42877185 42877539 -116722244 - MTE2b LTR MaLR -36 343 3 5 912 21 0 0 0 chr3 42879325 42879346 -116720437 + AT_rich Low_complexity Low_complexity 1 21 0 5 912 2011 97 23 3 chr3 42879436 42879737 -116720046 - L1_Mus3 LINE L1 -6 6632 6326 5 912 2985 71 5 2 chr3 42879818 42880213 -116719570 - MTA_Mm LTR MaLR 0 396 1 5 912 1382 254 90 0 chr3 42880308 42880651 -116719132 - MTD LTR MaLR 0 419 46 5 912 334 328 99 26 chr3 42880710 42880901 -116718882 + MLT1A1 LTR MaLR 21 225 -183 5 912 10381 223 42 10 chr3 42881016 42882772 -116717011 - Lx2B LINE L1 -81 6919 5114 5 912 2137 105 13 7 chr3 42882772 42883080 -116716703 - L1Md_F2 LINE L1 -16 6566 6257 5 912 10381 193 23 12 chr3 42883080 42884524 -116715259 - Lx2B LINE L1 -764 5113 3647 5 912 3319 191 210 10 chr3 42884515 42885568 -116714215 - Lx2B LINE L1 -3145 2732 1470 5 912 1547 258 23 53 chr3 42885552 42886114 -116713669 - L1VL4 LINE L1 -5358 944 400 5 912 3041 49 3 3 chr3 42886393 42886758 -116713025 - RLTR10B2 LTR ERVK 0 365 1 5 912 4098 123 8 0 chr3 42886758 42887439 -116712344 - IAPEY3-int LTR ERVK 0 7680 6965 5 912 1275 95 200 0 chr3 42887439 42887649 -116712134 - IAP-d-int LTR ERVK -1287 5255 5004 5 912 447 296 90 15 chr3 42887662 42887920 -116711863 - IAPEY3-int LTR ERVK -5481 1061 822 5 912 2772 45 15 0 chr3 42888060 42888396 -116711387 - RLTR10-int LTR ERVK -995 992 652 5 912 300 111 0 0 chr3 42888399 42888444 -116711339 - RLTR10-int LTR ERVK -6405 137 93 5 912 350 112 32 43 chr3 42888444 42888537 -116711246 + CT-rich Low_complexity Low_complexity 3 94 0 5 912 371 87 0 0 chr3 42888625 42888671 -116711112 - MMERVK10C-int LTR ERVK -7314 267 222 5 912 235 195 0 0 chr3 42888671 42888712 -116711071 - RLTR27 LTR ERVK -37 272 232 5 912 748 87 10 0 chr3 42888712 42888815 -116710968 - MMERVK10C-int LTR ERVK -7477 104 1 5 912 2881 47 0 67 chr3 42888815 42889206 -116710577 - RLTR10B2 LTR ERVK 0 365 1 5 912 230 167 17 0 chr3 42889947 42890007 -116709776 + (TA)n Simple_repeat Simple_repeat 2 62 0 5 912 198 171 0 0 chr3 42890045 42890086 -116709697 + (TG)n Simple_repeat Simple_repeat 2 42 0 5 912 838 50 0 0 chr3 42890743 42890842 -116708941 + L1Md_F3 LINE L1 5488 5586 -297 5 912 8163 39 11 2 chr3 42890842 42891830 -116707953 + L1Md_F3 LINE L1 5587 6583 -1 5 912 550 310 200 21 chr3 42891975 42892508 -116707275 + MLT1H-int LTR MaLR 197 961 -528 5 912 664 297 81 82 chr3 42893135 42893778 -116706005 - Lx9 LINE L1 -15 7629 6988 5 912 327 49 0 0 chr3 42894300 42894341 -116705442 + (TG)n Simple_repeat Simple_repeat 1 41 0 5 912 2615 61 0 20 chr3 42894460 42894798 -116704985 + ORR1A1 LTR MaLR 1 332 -14 5 912 2804 53 69 0 chr3 42894798 42895158 -116704625 - IAPEY_LTR LTR ERVK 0 385 1 5 912 2615 61 0 20 chr3 42895158 42895172 -116704611 + ORR1A1 LTR MaLR 333 346 0 5 912 21 82 0 0 chr3 42895662 42895711 -116704072 + AT_rich Low_complexity Low_complexity 1 49 0 5 912 424 326 27 0 chr3 42895768 42895915 -116703868 - RMER15 LTR ERVL -36 539 389 5 912 27 73 0 0 chr3 42896134 42896189 -116703594 + AT_rich Low_complexity Low_complexity 1 55 0 5 912 1396 35 0 0 chr3 42896291 42896462 -116703321 + L1Md_F2 LINE L1 6400 6570 -12 5 912 2008 87 41 14 chr3 42897771 42898063 -116701720 + L1Md_F2 LINE L1 6259 6558 -24 5 912 360 0 0 0 chr3 42898063 42898103 -116701680 + (TAA)n Simple_repeat Simple_repeat 3 42 0 5 912 582 41 0 0 chr3 42898645 42898718 -116701065 + (TG)n Simple_repeat Simple_repeat 2 74 0 5 912 201 39 0 0 chr3 42898720 42898746 -116701037 + (GA)n Simple_repeat Simple_repeat 1 26 0 5 912 361 316 20 94 chr3 42898782 42898879 -116700904 + Lx6 LINE L1 7201 7292 -168 5 912 297 0 0 0 chr3 42898879 42898912 -116700871 + (TTTA)n Simple_repeat Simple_repeat 3 35 0 5 912 361 316 20 94 chr3 42898912 42899069 -116700714 + Lx6 LINE L1 7293 7436 -24 5 912 3172 46 8 2 chr3 42899200 42899593 -116700190 + L1Md_F3 LINE L1 6180 6574 -10 5 912 23 33 0 0 chr3 42900123 42900153 -116699630 + AT_rich Low_complexity Low_complexity 1 30 0 5 912 213 196 0 0 chr3 42900589 42900635 -116699148 + (TA)n Simple_repeat Simple_repeat 1 46 0 5 912 26 53 0 17 chr3 42900644 42900672 -116699111 + AT_rich Low_complexity Low_complexity 1 28 0 5 912 1035 104 7 0 chr3 42900672 42900816 -116698967 + B1_Mus2 SINE Alu 3 147 0 5 912 26 53 0 17 chr3 42900816 42900845 -116698938 + AT_rich Low_complexity Low_complexity 1 29 0 5 912 225 0 0 0 chr3 42900845 42900870 -116698913 + (TAAAA)n Simple_repeat Simple_repeat 4 28 0 5 912 260 373 7 22 chr3 42901240 42901377 -116698406 + MLT1A0 LTR MaLR 1 135 -230 5 912 244 203 0 42 chr3 42901625 42901697 -116698086 + (TCTCTG)n Simple_repeat Simple_repeat 4 72 0 5 912 313 243 59 59 chr3 42901875 42901993 -116697790 + MLT2C1 LTR ERVL 111 228 -169 5 912 8975 107 22 9 chr3 42902054 42903762 -116696021 - Lx3_Mus LINE L1 0 7009 5281 5 912 7263 93 19 4 chr3 42903761 42904836 -116694947 + Lx3_Mus LINE L1 4171 5261 -625 5 912 7111 196 37 58 chr3 42904891 42905141 -116694642 - RLTR21 LTR ERVK 0 1572 1301 5 912 219 69 0 0 chr3 42905141 42905170 -116694613 + (CA)n Simple_repeat Simple_repeat 1 29 0 5 912 7111 196 37 58 chr3 42905170 42905217 -116694566 - RLTR21 LTR ERVK -272 1300 1245 5 912 291 93 0 0 chr3 42905217 42905260 -116694523 + (CATA)n Simple_repeat Simple_repeat 2 44 0 5 912 7111 196 37 58 chr3 42905260 42905344 -116694439 - RLTR21 LTR ERVK -328 1244 1174 5 912 450 88 0 0 chr3 42905344 42905412 -116694371 + (CATA)n Simple_repeat Simple_repeat 3 70 0 5 912 7111 196 37 58 chr3 42905412 42905797 -116693986 - RLTR21 LTR ERVK -399 1173 837 5 912 4362 135 26 1 chr3 42905797 42906501 -116693282 + L1_Mus4 LINE L1 5909 6629 -7 5 912 7111 196 37 58 chr3 42906501 42907331 -116692452 - RLTR21 LTR ERVK -736 836 8 5 912 714 333 47 33 chr3 42907556 42907919 -116691864 - MTEb LTR MaLR 0 379 12 5 912 366 23 0 0 chr3 42907928 42907971 -116691812 + (TA)n Simple_repeat Simple_repeat 2 44 0 5 912 294 73 0 0 chr3 42908005 42908046 -116691737 + (CA)n Simple_repeat Simple_repeat 2 42 0 5 912 22 56 0 0 chr3 42908800 42908836 -116690947 + AT_rich Low_complexity Low_complexity 1 36 0 5 912 380 241 7 0 chr3 42909197 42909334 -116690449 + (TA)n Simple_repeat Simple_repeat 1 138 0 5 912 294 386 0 16 chr3 42910147 42910276 -116689507 - L4 LINE RTE -649 1380 1254 5 912 1067 276 75 107 chr3 42910593 42910814 -116688969 - RMER19C LTR ERVK 0 902 691 5 912 3023 76 8 0 chr3 42910814 42911210 -116688573 + L1_Mus1 LINE L1 6169 6567 0 5 912 1248 250 68 38 chr3 42911210 42911624 -116688159 - RMER19C LTR ERVK -212 690 1 5 912 18052 21 0 0 chr3 42911928 42914033 -116685750 + L1Md_T LINE L1 3482 5586 -297 5 912 8984 5 0 0 chr3 42914033 42915029 -116684754 + L1Md_T LINE L1 5587 6582 0 5 912 326 333 47 5 chr3 42915047 42915237 -116684546 + L1MA5 LINE L1 6102 6299 -1 5 912 231 36 0 0 chr3 42915257 42915285 -116684498 + (A)n Simple_repeat Simple_repeat 1 28 0 5 912 5142 37 10 0 chr3 42915308 42915926 -116683857 - L1Md_F2 LINE L1 -275 6307 5684 5 912 1754 110 0 21 chr3 42915926 42916205 -116683578 + L1Md_F2 LINE L1 6310 6582 0 5 912 993 234 24 5 chr3 42917127 42917333 -116682450 - B3 SINE B2 -4 212 3 5 912 180 189 170 0 chr3 42918007 42918060 -116681723 + L2 LINE L2 2513 2574 -845 5 912 21 0 0 0 chr3 42918360 42918381 -116681402 + AT_rich Low_complexity Low_complexity 1 21 0 5 912 204 261 0 0 chr3 42918454 42918519 -116681264 + (CA)n Simple_repeat Simple_repeat 2 66 0 5 912 549 191 12 3 chr3 42918520 42918868 -116680915 + (TAGA)n Simple_repeat Simple_repeat 1 351 0 5 912 320 0 25 0 chr3 42918882 42918922 -116680861 + (TG)n Simple_repeat Simple_repeat 1 41 0 5 912 3862 183 111 121 chr3 42919193 42920307 -116679476 + RLTR25A LTR ERVK 1 1103 0 5 912 677 12 12 0 chr3 42920393 42920475 -116679308 + (TC)n Simple_repeat Simple_repeat 1 83 0 5 912 705 360 26 15 chr3 42920525 42920793 -116678990 - B4A SINE B4 -14 278 8 6 912 259 331 0 55 chr3 42921130 42921258 -116678525 + MER3 DNA MER1_type 86 206 -3 6 912 25 31 0 0 chr3 42923429 42923461 -116676322 + AT_rich Low_complexity Low_complexity 1 32 0 6 912 755 158 15 8 chr3 42923580 42923714 -116676069 - RLTR13D3 LTR ERVK -979 135 1 6 912 24 67 0 0 chr3 42923886 42923931 -116675852 + AT_rich Low_complexity Low_complexity 1 45 0 6 912 11122 202 41 41 chr3 42924397 42925550 -116674233 + L1VL4 LINE L1 875 2047 -3839 6 912 342 0 0 0 chr3 42925550 42925588 -116674195 + (CA)n Simple_repeat Simple_repeat 2 39 0 6 912 11122 197 42 54 chr3 42925588 42926945 -116672838 + L1VL4 LINE L1 2048 3338 -2548 6 912 344 40 20 0 chr3 42926945 42926995 -116672788 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 6 912 11122 197 42 54 chr3 42926995 42927853 -116671930 + L1VL4 LINE L1 3339 4207 -1679 6 912 4410 198 33 16 chr3 42927853 42929339 -116670444 + Lx LINE L1 5240 6652 -2 6 912 3215 232 23 51 chr3 42929336 42930122 -116669661 + Lx2B LINE L1 6184 6950 -50 6 912 1716 231 86 36 chr3 42930122 42930678 -116669105 + RLTR31A_Mm LTR ERVK 1 584 0 6 912 3215 232 23 51 chr3 42930678 42930717 -116669066 + Lx2B LINE L1 6951 6986 -14 6 912 968 122 0 75 chr3 42930717 42930876 -116668907 + B1_Mus2 SINE Alu 1 147 0 6 912 26412 77 13 1 chr3 42930890 42934477 -116665306 + L1Md_F2 LINE L1 1958 5585 -298 6 912 7560 59 17 2 chr3 42934478 42935457 -116664326 + L1Md_F2 LINE L1 5587 6580 -2 6 912 38 22 0 0 chr3 42936507 42936552 -116663231 + AT_rich Low_complexity Low_complexity 1 45 0 6 912 1151 58 6 0 chr3 42936814 42936970 -116662813 + (GGAA)n Simple_repeat Simple_repeat 3 159 0 6 912 184 195 0 89 chr3 42937011 42937056 -116662727 + L2b LINE L2 3335 3375 0 6 912 592 283 56 48 chr3 42937324 42937680 -116662103 + RLTR10D LTR ERVK 1 359 0 6 912 492 72 0 0 chr3 42937954 42938023 -116661760 + L1_Mus2 LINE L1 6070 6138 -428 6 912 241 71 0 0 chr3 42938012 42938054 -116661729 + L1_Mus2 LINE L1 6524 6565 -1 6 912 31 68 0 0 chr3 42939005 42939064 -116660719 + AT_rich Low_complexity Low_complexity 1 59 0 6 912 1173 71 0 0 chr3 42939360 42939515 -116660268 - L1_Mus1 LINE L1 0 6567 6413 6 912 675 349 124 0 chr3 42940675 42940973 -116658810 + MER2 DNA MER2_type 2 336 -9 6 912 810 298 52 35 chr3 42942333 42942948 -116656835 + RMER1B Other Other 27 803 -263 6 912 6018 205 32 5 chr3 42942946 42944271 -116655512 - L1_Mur3 LINE L1 -185 5695 4336 6 912 31257 75 2 7 chr3 42944269 42949205 -116650578 + L1Md_F3 LINE L1 683 5585 -298 6 912 8108 48 0 1 chr3 42949206 42950197 -116649586 + L1Md_F3 LINE L1 5587 6576 -8 6 912 242 29 29 0 chr3 42950261 42950296 -116649487 + (TTA)n Simple_repeat Simple_repeat 1 36 0 6 912 4904 90 5 1 chr3 42950296 42950965 -116648818 - L1_Mus1 LINE L1 -10 6557 5887 6 912 2457 23 2 298 chr3 42950965 42951519 -116648264 - RLTR10 LTR ERVK 0 390 1 6 912 14594 25 42 31 chr3 42951521 42953443 -116646340 - RLTR10-int LTR ERVK -3 1984 41 6 912 2468 20 2 298 chr3 42953453 42954007 -116645776 - RLTR10 LTR ERVK 0 390 1 6 912 281 130 0 0 chr3 42954007 42954053 -116645730 - L1_Mus1 LINE L1 -675 5892 5847 6 912 398 62 0 45 chr3 42954101 42954168 -116645615 + (T)n Simple_repeat Simple_repeat 1 64 0 6 912 703 242 25 97 chr3 42954223 42954584 -116645199 - L1_Mur3 LINE L1 -2738 3142 2808 6 912 992 134 0 11 chr3 42954594 42954775 -116645008 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 6 912 1628 107 25 18 chr3 42954786 42955072 -116644711 + L1_Mur1 LINE L1 5250 5537 -349 6 912 1762 88 0 8 chr3 42955072 42955314 -116644469 + LTRIS4 LTR ERV1 1 240 -267 6 912 2682 92 14 21 chr3 42955314 42955749 -116644034 + L1_Mur1 LINE L1 4314 4745 -1141 6 912 1357 112 90 12 chr3 42955752 42955997 -116643786 + LTRIS4 LTR ERV1 244 507 0 6 912 5892 102 14 1 chr3 42956025 42956381 -116643402 - L1_Mur1 LINE L1 -788 5098 4741 6 912 189 0 0 0 chr3 42956381 42956402 -116643381 + (TTTTG)n Simple_repeat Simple_repeat 1 21 0 6 912 312 27 0 0 chr3 42956403 42956440 -116643343 + (TTTA)n Simple_repeat Simple_repeat 4 40 0 6 912 5892 102 14 1 chr3 42956440 42956997 -116642786 - L1_Mur1 LINE L1 -1146 4740 4174 6 912 7731 102 20 3 chr3 42956996 42957750 -116642033 + Lx3_Mus LINE L1 5281 6034 -975 6 912 552 56 0 0 chr3 42957750 42957822 -116641961 + (GGGA)n Simple_repeat Simple_repeat 1 72 0 6 912 7731 128 34 16 chr3 42957822 42958720 -116641063 + Lx3_Mus LINE L1 6035 6962 -47 6 912 579 222 93 0 chr3 42958700 42958862 -116640921 - L1_Mur3 LINE L1 -7496 232 56 6 912 232 223 71 41 chr3 42958878 42958976 -116640807 + Lx9 LINE L1 6950 7050 -594 6 912 415 323 80 27 chr3 42959034 42959371 -116640412 + Lx9 LINE L1 7155 7509 -135 6 912 357 43 0 0 chr3 42960783 42960830 -116638953 + (CA)n Simple_repeat Simple_repeat 2 48 0 6 912 25 90 0 0 chr3 42960935 42961002 -116638781 + AT_rich Low_complexity Low_complexity 1 67 0 6 912 6029 93 22 10 chr3 42961378 42962285 -116637498 - L1_Mus3 LINE L1 -7 6631 5714 6 912 1535 169 4 0 chr3 42962281 42962547 -116637236 + L1_Mus3 LINE L1 5459 5725 -158 6 912 256 24 24 24 chr3 42964245 42964287 -116635496 + (CAAAA)n Simple_repeat Simple_repeat 4 45 0 6 912 255 300 0 16 chr3 42964689 42964750 -116635033 - ID4_ SINE ID -19 64 5 6 912 231 317 42 34 chr3 42964786 42964914 -116634869 + B4 SINE B4 8 142 -150 6 912 228 86 0 0 chr3 42965002 42965037 -116634746 + (CAGA)n Simple_repeat Simple_repeat 4 38 0 6 912 211 224 41 0 chr3 42965283 42965332 -116634451 - PB1D10 SINE Alu 0 117 67 6 912 492 275 137 22 chr3 42965521 42965703 -116634080 - Lx5 LINE L1 -5 7045 6843 6 912 2133 204 18 58 chr3 42965722 42966507 -116633276 - Lx5 LINE L1 -948 6102 5340 6 912 3389 59 32 7 chr3 42966532 42966974 -116632809 - L1Md_F2 LINE L1 -14 6568 6116 6 912 4064 75 0 0 chr3 42966999 42967542 -116632241 + L1Md_F2 LINE L1 5587 6129 -453 6 912 8500 211 23 51 chr3 42967531 42967927 -116631856 - Lx5 LINE L1 -524 5353 4975 6 912 180 111 0 0 chr3 42967927 42967954 -116631829 + (TTG)n Simple_repeat Simple_repeat 1 27 0 6 912 8500 211 23 51 chr3 42967954 42970075 -116629708 - Lx5 LINE L1 -903 4974 2907 6 912 252 26 0 0 chr3 42970091 42970129 -116629654 - L1_Mus2 LINE L1 0 6566 6529 6 912 2325 197 37 17 chr3 42970129 42970665 -116629118 + MYSERV6-int LTR ERVK 8297 8843 -116 6 912 707 262 34 69 chr3 42970727 42971076 -116628707 + RLTR15 LTR ERVK 8 344 -15 6 912 243 0 0 0 chr3 42971389 42971416 -116628367 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 6 912 7666 45 7 2 chr3 42971517 42972729 -116627054 - L1Md_F3 LINE L1 0 6584 5367 6 912 1269 245 51 12 chr3 42973238 42973572 -116626211 - RLTR11A2 LTR ERVK -29 498 152 6 912 870 258 52 113 chr3 42974033 42974378 -116625405 - RLTR23 LTR ERV1 0 430 107 6 912 444 19 0 0 chr3 42974402 42974455 -116625328 + (TCTA)n Simple_repeat Simple_repeat 2 54 0 6 912 297 0 0 0 chr3 42974482 42974515 -116625268 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 6 912 432 198 65 11 chr3 42974517 42974609 -116625174 - RLTR23 LTR ERV1 -326 104 8 6 912 26 23 0 23 chr3 42975660 42975678 -116624105 + AT_rich Low_complexity Low_complexity 1 18 0 6 912 340 329 51 7 chr3 42975678 42975816 -116623967 + RSINE1 SINE B4 3 146 -19 6 912 26 23 0 23 chr3 42975816 42975841 -116623942 + AT_rich Low_complexity Low_complexity 1 25 0 6 912 204 125 0 45 chr3 42975870 42975937 -116623846 + (TA)n Simple_repeat Simple_repeat 2 65 0 6 912 297 75 0 0 chr3 42976169 42976209 -116623574 + (TG)n Simple_repeat Simple_repeat 1 40 0 6 912 30273 90 12 8 chr3 42976795 42981378 -116618405 - L1Md_F2 LINE L1 -13 6569 1978 6 912 280 0 50 0 chr3 42981378 42981418 -116618365 + (TTTG)n Simple_repeat Simple_repeat 2 43 0 6 912 30273 91 14 9 chr3 42981418 42981701 -116618082 - L1Md_F2 LINE L1 -3906 1977 1684 6 912 234 62 0 0 chr3 42981701 42981733 -116618050 + (TG)n Simple_repeat Simple_repeat 1 32 0 6 912 30273 166 78 19 chr3 42981733 42983139 -116616644 - L1Md_F2 LINE L1 -4200 1683 217 6 912 1639 223 107 24 chr3 42983141 42983523 -116616260 - MTC LTR MaLR -7 414 1 6 912 1487 156 53 38 chr3 42983528 42983848 -116615935 - RMER6C LTR ERVK 0 690 366 6 912 1112 183 89 0 chr3 42983839 42984052 -116615731 - RMER6C LTR ERVK -488 232 1 6 912 1424 129 8 4 chr3 42984059 42984293 -116615490 + L1_Mus4 LINE L1 6397 6631 -5 6 912 1400 296 54 28 chr3 42984309 42984913 -116614870 + Lx6 LINE L1 6455 7460 0 6 912 318 181 163 41 chr3 42985171 42985269 -116614514 + RLTR9A LTR ERVK 1 110 -258 6 912 257 279 21 41 chr3 42985346 42985443 -116614340 + RLTR9B LTR ERVK 343 437 0 6 912 230 306 24 0 chr3 42985484 42985569 -116614214 - Lx8 LINE L1 -135 7338 7252 6 912 225 206 68 81 chr3 42985569 42985643 -116614140 + MLT1F1 LTR MaLR 264 336 -233 6 912 645 310 85 4 chr3 42985646 42985918 -116613865 - Lx8 LINE L1 -325 7148 6855 6 912 721 342 7 0 chr3 42985981 42986276 -116613507 + Lx8 LINE L1 6362 6658 -815 6 912 396 0 0 0 chr3 42986290 42986334 -116613449 + (A)n Simple_repeat Simple_repeat 1 44 0 6 912 1443 272 73 21 chr3 42986452 42987674 -116612109 - Lx6 LINE L1 -60 7400 5847 6 912 2058 154 90 15 chr3 42987674 42988064 -116611719 + RLTR19 LTR ERVK 1 419 -80 6 912 1928 236 5 18 chr3 42988295 42988739 -116611044 - RMER1B Other Other -220 846 409 6 912 5482 5 1 0 chr3 42988753 42989407 -116610376 - L1_Mm LINE L1 -1703 4180 3526 6 912 9761 9 0 0 chr3 42989405 42990563 -116609220 + L1_Mm LINE L1 4172 5329 -554 6 14 33693 43 6 1 chr3 42990580 42995682 -116604101 + L1Md_T LINE L1 412 5589 -297 6 913 8967 6 0 3 chr3 42995682 42996702 -116603081 + L1Md_T LINE L1 5590 6585 0 6 913 2360 11 0 0 chr3 42996702 42996980 -116602803 + L1Md_A LINE L1 5309 5586 -297 6 913 8838 14 0 0 chr3 42996980 42997974 -116601809 + L1Md_A LINE L1 5587 6580 -2 6 913 297 0 0 0 chr3 42998400 42998433 -116601350 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 6 913 2847 133 6 80 chr3 42999451 43000000 -116599783 - L1_Mus1 LINE L1 0 6567 6060 6 913 9705 54 2 1 chr3 43000000 43001426 -116598357 - L1Md_F2 LINE L1 -516 6066 4638 1 913 553 239 53 26 chr3 43001618 43001807 -116597976 + Lx9 LINE L1 7322 7515 -129 2 913 22 0 0 0 chr3 43001965 43001987 -116597796 + AT_rich Low_complexity Low_complexity 1 22 0 3 913 310 319 71 65 chr3 43002352 43002520 -116597263 - HAL1-3A_ME LINE L1 -406 2452 2284 4 913 444 152 33 7 chr3 43002567 43002719 -116597064 + (TCTA)n Simple_repeat Simple_repeat 1 156 0 5 913 22 0 0 0 chr3 43003033 43003055 -116596728 + AT_rich Low_complexity Low_complexity 1 22 0 6 913 232 25 24 48 chr3 43003430 43003472 -116596311 + (CAAAAA)n Simple_repeat Simple_repeat 1 41 0 7 913 368 355 50 11 chr3 43006246 43006428 -116593355 + MLT1D LTR MaLR 10 198 -167 8 913 210 111 22 22 chr3 43007478 43007524 -116592259 + (CAAA)n Simple_repeat Simple_repeat 1 46 0 9 913 476 350 16 5 chr3 43007524 43007711 -116592072 + MLT1D LTR MaLR 317 505 0 8 913 29 28 0 0 chr3 43009843 43009879 -116589904 + AT_rich Low_complexity Low_complexity 1 36 0 1 913 411 342 37 21 chr3 43010320 43010511 -116589272 - B3 SINE B2 -4 194 1 1 913 268 295 41 21 chr3 43011039 43011136 -116588647 - ID_B1 SINE B4 -19 205 107 1 913 1020 115 8 7 chr3 43011320 43011483 -116588300 + L1Md_F2 LINE L1 5440 5615 -718 1 913 8424 33 0 0 chr3 43011484 43012477 -116587306 + L1Md_F2 LINE L1 5588 6580 -2 1 913 279 0 0 0 chr3 43012617 43012648 -116587135 + (CA)n Simple_repeat Simple_repeat 2 32 0 1 913 489 276 27 14 chr3 43012785 43012932 -116586851 + B1_Mur2 SINE Alu 1 149 0 1 913 303 186 51 10 chr3 43013246 43013344 -116586439 + (TA)n Simple_repeat Simple_repeat 2 103 0 1 913 672 90 0 0 chr3 43014463 43014563 -116585220 + L1_Mus2 LINE L1 6465 6564 -2 1 913 22 0 0 0 chr3 43014707 43014729 -116585054 + AT_rich Low_complexity Low_complexity 1 22 0 1 913 3459 131 41 64 chr3 43014731 43015370 -116584413 - Lx3A LINE L1 -8 6973 6350 1 913 411 21 0 0 chr3 43015748 43015796 -116583987 + (TG)n Simple_repeat Simple_repeat 1 48 0 2 913 328 304 40 23 chr3 43016140 43016315 -116583468 - L1M3 LINE L1 -893 5247 5070 2 913 280 181 13 77 chr3 43016437 43016515 -116583268 - RMER19C LTR ERVK -501 110 38 2 913 27 29 0 0 chr3 43016520 43016554 -116583229 + AT_rich Low_complexity Low_complexity 1 34 0 2 913 231 176 103 0 chr3 43016998 43017066 -116582717 + Lx9 LINE L1 7570 7644 0 2 913 1757 144 10 0 chr3 43019527 43019825 -116579958 + Lx LINE L1 6354 6654 0 2 913 314 365 0 0 chr3 43019991 43020087 -116579696 - MuRRS4-int LTR ERV1 -2013 5588 5493 2 913 1143 276 76 23 chr3 43020283 43020819 -116578964 - MuRRS4-int LTR ERV1 -1087 3976 3470 2 913 3044 133 66 2 chr3 43020854 43021013 -116578770 + RLTR1 LTR ERV1 1 160 -464 2 913 526 63 25 0 chr3 43021013 43021092 -116578691 + (TAAA)n Simple_repeat Simple_repeat 4 84 0 2 913 3044 133 66 2 chr3 43021092 43021430 -116578353 + RLTR1 LTR ERV1 161 528 -96 2 913 5039 147 30 3 chr3 43021431 43022362 -116577421 - L1_Mm LINE L1 -2061 3822 2867 2 913 399 52 0 0 chr3 43022345 43022403 -116577380 - L1VL1 LINE L1 -5653 769 712 3 913 697 113 0 9 chr3 43022407 43022514 -116577269 - RLTR23 LTR ERV1 -324 106 1 3 913 381 205 60 43 chr3 43022991 43023069 -116576714 + RMER4B LTR ERVK 458 532 -53 3 913 1241 53 12 0 chr3 43023069 43023238 -116576545 + L1Md_F3 LINE L1 6412 6582 -2 3 913 381 205 60 43 chr3 43023238 43023276 -116576507 + RMER4B LTR ERVK 533 575 -10 3 913 4051 237 46 9 chr3 43023276 43024371 -116575412 + MYSERV-int LTR ERVK 5386 6520 -30 3 913 3519 13 2 0 chr3 43025066 43025461 -116574322 + MTA_Mm LTR MaLR 1 396 0 3 913 747 166 19 0 chr3 43025662 43025819 -116573964 + CT-rich Low_complexity Low_complexity 2 161 0 3 913 909 88 0 0 chr3 43025837 43025974 -116573809 + (TG)n Simple_repeat Simple_repeat 2 138 0 3 913 449 345 14 7 chr3 43025999 43026139 -116573644 - RSINE1 SINE B4 -22 143 3 3 913 371 309 187 18 chr3 43026811 43027008 -116572775 + B4A SINE B4 1 230 -62 3 913 377 270 0 0 chr3 43027011 43027085 -116572698 + B3 SINE B2 5 78 -138 4 913 351 65 0 0 chr3 43027172 43027218 -116572565 + (CA)n Simple_repeat Simple_repeat 1 46 0 4 913 258 156 0 0 chr3 43028652 43028697 -116571086 + (CATG)n Simple_repeat Simple_repeat 1 45 0 4 913 311 318 132 41 chr3 43029205 43029402 -116570381 + B4A SINE B4 70 284 -8 4 913 336 315 74 57 chr3 43029443 43029618 -116570165 + MLT1A0 LTR MaLR 4 181 -184 4 913 4683 114 4 3 chr3 43029640 43030328 -116569455 + L1_Mus4 LINE L1 5943 6631 -5 4 913 397 366 10 19 chr3 43030908 43031117 -116568666 + ID_B1 SINE B4 2 208 -16 4 913 475 327 94 8 chr3 43032489 43032754 -116567029 - Lx9 LINE L1 -178 7466 7179 4 913 3661 119 22 40 chr3 43035877 43036470 -116563313 - MT2B2 LTR ERVL -2 582 1 4 913 24 32 0 0 chr3 43037104 43037135 -116562648 + AT_rich Low_complexity Low_complexity 1 31 0 4 913 387 348 25 25 chr3 43037890 43038052 -116561731 + B4A SINE B4 88 249 -43 5 913 260 289 62 0 chr3 43038078 43038175 -116561608 - RLTR40 LTR ERVK -34 783 681 5 913 998 150 0 11 chr3 43038997 43039179 -116560604 + CT-rich Low_complexity Low_complexity 1 180 0 5 913 243 0 0 0 chr3 43039179 43039206 -116560577 + (TTCCC)n Simple_repeat Simple_repeat 5 31 0 5 913 1546 193 30 7 chr3 43039245 43039542 -116560241 - ORR1A3 LTR MaLR 0 326 23 5 913 8948 14 0 1 chr3 43039551 43040638 -116559145 - L1Md_T LINE L1 0 6582 5535 5 913 1055 291 46 19 chr3 43040612 43040929 -116558854 - Lx5 LINE L1 -114 6936 6632 5 913 283 387 40 13 chr3 43041127 43041279 -116558504 - Tigger5 DNA MER2_type -2161 245 90 5 913 806 10 0 0 chr3 43042095 43042199 -116557584 + L1Md_T LINE L1 6478 6581 -1 5 913 674 242 60 16 chr3 43042232 43042417 -116557366 - RMER1B Other Other -15 1051 859 5 913 1585 144 7 7 chr3 43042423 43042695 -116557088 - L1_Mus3 LINE L1 -3 6635 6364 6 913 1833 92 39 0 chr3 43042695 43042955 -116556828 + L1_Mus3 LINE L1 6079 6348 -218 6 913 1286 268 124 62 chr3 43042951 43043662 -116556121 - RMER1B Other Other -204 862 53 5 913 301 281 6 9 chr3 43044072 43044162 -116555621 + MLT1A0 LTR MaLR 78 166 -242 6 913 283 289 50 63 chr3 43044788 43044947 -116554836 + MT2B2 LTR ERVL 108 264 -320 6 913 888 42 0 0 chr3 43044864 43044982 -116554801 + B1_Mus2 SINE Alu 30 147 0 6 913 401 346 22 22 chr3 43045376 43045515 -116554268 + B4 SINE B4 150 288 -4 6 913 219 188 0 0 chr3 43045595 43045643 -116554140 + GA-rich Low_complexity Low_complexity 2 49 0 6 913 27 0 0 0 chr3 43045675 43045702 -116554081 + AT_rich Low_complexity Low_complexity 1 27 0 6 913 378 0 0 0 chr3 43046783 43046825 -116552958 + (TC)n Simple_repeat Simple_repeat 2 43 0 6 913 243 0 0 0 chr3 43046825 43046851 -116552932 + (TG)n Simple_repeat Simple_repeat 2 28 0 6 913 360 397 40 24 chr3 43046891 43047139 -116552644 - B4A SINE B4 -39 253 2 6 913 5173 138 33 3 chr3 43047445 43048846 -116550937 - L1_Mus4 LINE L1 -280 6356 4914 7 913 283 285 97 88 chr3 43048876 43049103 -116550680 - LTR40c LTR ERVL -33 432 204 7 913 1626 81 27 0 chr3 43049180 43049402 -116550381 + L1_Mus1 LINE L1 6340 6567 0 7 913 2972 245 100 38 chr3 43051229 43051329 -116548454 - RMER1A Other Other -12 1018 912 7 913 459 0 0 0 chr3 43051329 43051380 -116548403 + (CA)n Simple_repeat Simple_repeat 2 52 0 7 913 2972 245 100 38 chr3 43051380 43052222 -116547561 - RMER1A Other Other -119 911 18 7 913 540 0 0 0 chr3 43052258 43052318 -116547465 + (TG)n Simple_repeat Simple_repeat 1 60 0 7 913 186 71 0 0 chr3 43052371 43052399 -116547384 + (TTTTC)n Simple_repeat Simple_repeat 3 30 0 7 913 1614 107 0 0 chr3 43052405 43052638 -116547145 - L1_Mus1 LINE L1 -6 6561 6329 7 913 698 160 277 11 chr3 43052979 43053156 -116546627 + URR1B DNA MER1_type 2 225 0 7 913 1036 108 23 6 chr3 43053674 43053851 -116545932 - L1_Mus3 LINE L1 -6 6632 6453 7 913 2233 72 3 0 chr3 43053851 43054133 -116545650 + L1_Mus3 LINE L1 6139 6421 -215 7 913 534 238 0 0 chr3 43054153 43054254 -116545529 - B1_Mm SINE Alu -6 141 41 8 913 218 191 21 0 chr3 43056950 43056997 -116542786 + GA-rich Low_complexity Low_complexity 2 49 0 8 913 633 27 0 0 chr3 43057002 43057077 -116542706 + (GGAA)n Simple_repeat Simple_repeat 2 76 0 8 913 6295 68 6 0 chr3 43057841 43058651 -116541132 + L1_Mus1 LINE L1 5753 6567 0 8 913 1318 257 20 71 chr3 43059082 43059476 -116540307 + ORR1D1 LTR MaLR 1 374 0 8 913 459 0 0 0 chr3 43059691 43059742 -116540041 + (TTA)n Simple_repeat Simple_repeat 2 52 0 8 913 250 335 33 7 chr3 43060021 43060174 -116539609 + L1MDa LINE L1 2170 2326 -4307 8 913 288 0 0 0 chr3 43060241 43060273 -116539510 + (CA)n Simple_repeat Simple_repeat 2 33 0 8 913 28 0 0 0 chr3 43060833 43060861 -116538922 + AT_rich Low_complexity Low_complexity 1 28 0 8 913 21 0 0 0 chr3 43061584 43061605 -116538178 + AT_rich Low_complexity Low_complexity 1 21 0 8 913 741 292 21 11 chr3 43062037 43062224 -116537559 - ID_B1 SINE B4 -8 216 28 9 913 192 77 0 0 chr3 43062696 43062722 -116537061 + (T)n Simple_repeat Simple_repeat 1 26 0 9 913 211 170 19 19 chr3 43062957 43063011 -116536772 + CT-rich Low_complexity Low_complexity 3 56 0 9 913 336 346 61 8 chr3 43063048 43063179 -116536604 - B1F2 SINE Alu -9 140 3 9 913 677 271 98 64 chr3 43063197 43063643 -116536140 - MT2B LTR ERVL -2 599 1 9 913 322 284 15 0 chr3 43063644 43063711 -116536072 - ID SINE ID -155 69 2 9 913 394 347 121 13 chr3 43063850 43064303 -116535480 - L1M2 LINE L1 -2805 3338 2837 9 913 385 243 0 14 chr3 43064353 43064499 -116535284 + CT-rich Low_complexity Low_complexity 3 146 0 9 913 505 311 34 17 chr3 43064524 43064763 -116535020 - L1M2 LINE L1 -3325 2818 2576 9 913 239 179 53 18 chr3 43065477 43065534 -116534249 - MurSatRep1 Unknown Unknown -476 1661 1603 9 913 3678 244 81 17 chr3 43065839 43066925 -116532858 - ORR1B2-int LTR MaLR -330 1179 24 9 913 755 278 31 16 chr3 43066929 43067185 -116532598 - ORR1B2 LTR MaLR -9 358 99 9 913 533 226 1 24 chr3 43067711 43067842 -116531941 - ORR1B2 LTR MaLR -211 116 1 9 913 22 0 0 0 chr3 43067895 43067917 -116531866 + AT_rich Low_complexity Low_complexity 1 22 0 1 913 233 241 19 0 chr3 43068146 43068200 -116531583 + CT-rich Low_complexity Low_complexity 2 56 0 1 913 328 331 86 7 chr3 43068312 43068452 -116531331 + RMER5 LTR ERV1 191 341 -193 1 913 319 305 67 84 chr3 43070512 43070691 -116529092 - B3A SINE B2 -19 176 1 1 913 240 35 0 0 chr3 43071585 43071614 -116528169 + (TC)n Simple_repeat Simple_repeat 1 29 0 1 913 321 68 0 0 chr3 43071615 43071659 -116528124 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 913 4088 80 2 36 chr3 43072346 43072928 -116526855 + L1Md_F2 LINE L1 6009 6570 -12 1 913 216 0 0 0 chr3 43074169 43074193 -116525590 + (A)n Simple_repeat Simple_repeat 1 24 0 1 913 198 0 0 0 chr3 43074397 43074419 -116525364 + (A)n Simple_repeat Simple_repeat 1 22 0 1 913 251 367 0 39 chr3 43075024 43075126 -116524657 - B4A SINE B4 -165 127 30 1 913 273 57 0 0 chr3 43075198 43075233 -116524550 + U2 snRNA snRNA 2 36 -152 1 913 253 387 16 8 chr3 43076825 43076950 -116522833 - MER82 DNA MER2_type -514 139 14 1 913 334 38 19 19 chr3 43077518 43077571 -116522212 + (TTTTG)n Simple_repeat Simple_repeat 3 55 0 1 913 1416 278 60 32 chr3 43078533 43079065 -116520718 - Lx6 LINE L1 -22 7438 6539 1 913 2156 272 66 6 chr3 43079091 43079754 -116520029 - Lx5 LINE L1 -676 6374 5672 1 913 1743 258 26 39 chr3 43079748 43080292 -116519491 - Lx5 LINE L1 -347 5533 4997 1 913 1047 170 75 0 chr3 43080308 43080417 -116519366 - Lx2 LINE L1 -6 6991 6868 1 913 198 71 0 0 chr3 43080417 43080445 -116519338 + (CCCA)n Simple_repeat Simple_repeat 2 29 0 1 913 1047 170 75 0 chr3 43080445 43080535 -116519248 - Lx2 LINE L1 -130 6867 6778 1 913 429 331 19 38 chr3 43080570 43080730 -116519053 - B4A SINE B4 -131 161 5 1 913 306 0 0 0 chr3 43081185 43081219 -116518564 + (CA)n Simple_repeat Simple_repeat 2 35 0 1 913 236 366 86 12 chr3 43081978 43082141 -116517642 - B3 SINE B2 0 216 42 1 913 1446 267 25 5 chr3 43082192 43082587 -116517196 - Lx9 LINE L1 -617 7027 6625 1 913 938 283 75 29 chr3 43082611 43083026 -116516757 + Lx9 LINE L1 6899 7464 -180 1 913 438 65 0 0 chr3 43083032 43083094 -116516689 + (CA)n Simple_repeat Simple_repeat 2 63 0 1 913 316 178 39 64 chr3 43083098 43083176 -116516607 - HAL1-3A_ME LINE L1 -822 2036 1961 1 913 336 297 52 149 chr3 43083277 43083472 -116516311 - RLTR18 LTR ERVK -144 472 192 1 913 371 377 9 70 chr3 43083494 43083708 -116516075 - RLTR18 LTR ERVK -300 316 116 1 913 225 262 38 28 chr3 43083807 43083913 -116515870 + Charlie7a DNA MER1_type 166 272 0 1 913 625 342 16 28 chr3 43085012 43085229 -116514554 + B3A SINE B2 9 213 -3 1 913 725 259 15 112 chr3 43085357 43085553 -116514230 - B3 SINE B2 -11 184 8 1 913 251 341 28 64 chr3 43085591 43085732 -116514051 - MTE-int LTR MaLR -44 1536 1401 1 913 313 186 0 38 chr3 43085985 43086091 -116513692 + (CAGAGA)n Simple_repeat Simple_repeat 3 104 0 1 913 459 121 0 0 chr3 43086330 43086396 -116513387 - L1_Mus3 LINE L1 -351 6287 6222 1 913 611 110 0 63 chr3 43086396 43086522 -116513261 + L1_Mus4 LINE L1 6512 6629 -7 1 913 315 0 0 0 chr3 43087023 43087058 -116512725 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 1 913 2812 186 22 11 chr3 43089264 43089802 -116509981 - Lx4A LINE L1 -2 7056 6513 1 913 2826 176 17 4 chr3 43089802 43090321 -116509462 + Lx4A LINE L1 5967 6492 -566 1 913 23 33 0 0 chr3 43090720 43090750 -116509033 + AT_rich Low_complexity Low_complexity 1 30 0 1 913 395 298 187 0 chr3 43090862 43091033 -116508750 - Lx8 LINE L1 -192 7281 7079 1 913 304 340 0 41 chr3 43091083 43091181 -116508602 - B1F SINE Alu -46 103 10 1 913 28 29 0 0 chr3 43091430 43091465 -116508318 + AT_rich Low_complexity Low_complexity 1 35 0 1 913 247 296 111 14 chr3 43092926 43092998 -116506785 + B4 SINE B4 200 278 -14 1 913 351 0 0 0 chr3 43093413 43093452 -116506331 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 913 441 36 0 0 chr3 43093636 43093691 -116506092 + (TG)n Simple_repeat Simple_repeat 2 56 0 1 913 532 179 0 23 chr3 43094110 43094287 -116505496 + CT-rich Low_complexity Low_complexity 2 174 0 1 913 404 308 0 0 chr3 43095032 43095123 -116504660 - B4 SINE B4 -197 95 5 1 913 3017 120 17 9 chr3 43095491 43095954 -116503829 - Lx3_Mus LINE L1 0 7009 6543 1 913 411 274 40 0 chr3 43096280 43096393 -116503390 - PB1D10 SINE Alu -17 132 12 1 913 488 252 0 26 chr3 43097403 43097517 -116502266 - B3A SINE B2 -84 114 4 1 913 42 86 0 0 chr3 43097618 43097723 -116502060 + AT_rich Low_complexity Low_complexity 1 105 0 1 913 198 0 0 0 chr3 43097787 43097809 -116501974 + (CA)n Simple_repeat Simple_repeat 2 23 0 1 913 429 76 0 0 chr3 43098576 43098642 -116501141 + (A)n Simple_repeat Simple_repeat 1 66 0 1 913 217 0 0 57 chr3 43098701 43098736 -116501047 + (TAA)n Simple_repeat Simple_repeat 2 34 0 1 913 278 169 15 0 chr3 43098768 43098833 -116500950 + CT-rich Low_complexity Low_complexity 1 66 0 1 913 1627 64 5 5 chr3 43098918 43099139 -116500644 + L1Md_F2 LINE L1 6360 6580 -2 1 913 22 35 0 0 chr3 43099743 43099772 -116500011 + AT_rich Low_complexity Low_complexity 1 29 0 1 913 23 0 0 0 chr3 43101364 43101387 -116498396 + AT_rich Low_complexity Low_complexity 1 23 0 1 913 251 140 0 20 chr3 43101388 43101439 -116498344 - Lx9 LINE L1 -75 7569 7520 1 913 435 38 0 0 chr3 43101439 43101492 -116498291 + (TA)n Simple_repeat Simple_repeat 2 54 0 1 913 4861 139 51 1 chr3 43101595 43102380 -116497403 - Lx2A LINE L1 0 7008 6185 1 913 3808 126 24 2 chr3 43102385 43103020 -116496763 + Lx2A LINE L1 5523 6177 -831 1 913 1540 272 47 14 chr3 43103023 43103061 -116496722 - Lx9 LINE L1 -174 7470 7436 1 913 195 129 0 0 chr3 43103061 43103092 -116496691 + (TA)n Simple_repeat Simple_repeat 2 32 0 1 913 1540 272 47 14 chr3 43103092 43103497 -116496286 - Lx9 LINE L1 -209 7435 7013 1 913 188 345 0 0 chr3 43103550 43103605 -116496178 + L2 LINE L2 2706 2760 -659 1 913 41152 6 0 0 chr3 43103854 43110419 -116489364 - L1Md_A LINE L1 0 6582 18 1 913 33 25 0 0 chr3 43110500 43110540 -116489243 + AT_rich Low_complexity Low_complexity 1 40 0 1 913 27 29 0 0 chr3 43111771 43111805 -116487978 + AT_rich Low_complexity Low_complexity 1 34 0 1 913 21 36 0 0 chr3 43112268 43112296 -116487487 + AT_rich Low_complexity Low_complexity 1 28 0 1 913 7210 39 3 0 chr3 43113981 43114851 -116484932 - L1Md_A LINE L1 0 6582 5710 1 913 902 19 0 0 chr3 43114834 43114938 -116484845 + L1Md_A LINE L1 5603 5706 -177 1 913 21 0 0 0 chr3 43115628 43115649 -116484134 + AT_rich Low_complexity Low_complexity 1 21 0 1 913 251 361 46 8 chr3 43115729 43115860 -116483923 + Lx7 LINE L1 7089 7224 -472 1 913 2950 187 108 44 chr3 43116050 43116216 -116483567 + Lx4B LINE L1 5098 5279 -598 1 913 3569 69 34 0 chr3 43116216 43116682 -116483101 - L1_Mus2 LINE L1 0 6566 6085 1 913 966 119 28 0 chr3 43116684 43116827 -116482956 + B1_Mus1 SINE Alu 2 148 0 1 913 2950 187 108 44 chr3 43116827 43116838 -116482945 + Lx4B LINE L1 5280 5280 -597 1 913 304 59 39 0 chr3 43116838 43116889 -116482894 + (CAA)n Simple_repeat Simple_repeat 2 54 0 1 913 249 33 0 0 chr3 43116891 43116921 -116482862 + (CCA)n Simple_repeat Simple_repeat 1 30 0 1 913 2950 187 108 44 chr3 43116921 43117345 -116482438 + Lx4B LINE L1 5280 5739 -138 1 913 758 11 11 0 chr3 43117345 43117436 -116482347 + (GAAA)n Simple_repeat Simple_repeat 2 93 0 1 913 2950 166 48 18 chr3 43117436 43117833 -116481950 + Lx4B LINE L1 5740 6146 -904 1 913 1542 22 43 0 chr3 43117833 43118017 -116481766 + B2_Mm1t SINE B2 1 192 -1 1 913 2611 239 67 133 chr3 43118017 43118081 -116481702 + Lx4B LINE L1 6147 6161 -889 1 913 1058 69 21 0 chr3 43118081 43118226 -116481557 + B1_Mus1 SINE Alu 1 148 0 1 913 2611 239 67 133 chr3 43118226 43118275 -116481508 + Lx4B LINE L1 6162 6168 -882 1 913 693 92 0 0 chr3 43118275 43118373 -116481410 + (GGAA)n Simple_repeat Simple_repeat 3 100 0 1 913 2611 239 67 133 chr3 43118373 43118855 -116480928 + Lx4B LINE L1 6169 6656 -394 1 913 376 234 216 59 chr3 43119142 43119378 -116480405 + L1M2 LINE L1 4698 4970 -1173 1 913 297 0 0 0 chr3 43119446 43119479 -116480304 + (CA)n Simple_repeat Simple_repeat 2 34 0 1 913 360 43 0 0 chr3 43119479 43119524 -116480259 + (TA)n Simple_repeat Simple_repeat 2 47 0 1 913 673 255 105 39 chr3 43119700 43119957 -116479826 + B4A SINE B4 1 274 -18 1 913 29 47 0 0 chr3 43120148 43120191 -116479592 + AT_rich Low_complexity Low_complexity 1 43 0 1 913 2354 177 79 6 chr3 43120415 43120881 -116478902 + Lx4B LINE L1 6559 7058 0 1 913 435 19 0 0 chr3 43121081 43121133 -116478650 + (TA)n Simple_repeat Simple_repeat 2 53 0 1 913 286 350 66 10 chr3 43121506 43121702 -116478081 + MIR SINE MIR 2 208 -54 1 114 7086 128 11 7 chr3 43121901 43123091 -116476692 - Lx LINE L1 -7 6647 5448 1 914 36124 61 3 1 chr3 43123138 43128944 -116470839 - L1Md_F3 LINE L1 -12 6575 662 1 914 4103 171 18 5 chr3 43128951 43129739 -116470044 + L1_Mm LINE L1 4354 5151 -732 1 914 707 127 289 6 chr3 43130288 43130531 -116469252 + L1_Mus2 LINE L1 6040 6419 -147 1 914 1206 121 5 0 chr3 43130567 43130809 -116468974 - L1_Mus2 LINE L1 0 6566 6376 1 914 1050 127 220 19 chr3 43130811 43131020 -116468763 - ORR1A4 LTR MaLR -77 252 2 1 914 395 360 95 37 chr3 43131218 43131460 -116468323 - MTE2b LTR MaLR -123 256 1 1 914 3530 228 52 2 chr3 43131499 43132416 -116467367 + Lx4B LINE L1 5997 6980 -20 1 914 23 0 0 0 chr3 43132837 43132860 -116466923 + AT_rich Low_complexity Low_complexity 1 23 0 1 914 599 329 43 48 chr3 43133064 43133294 -116466489 + B4A SINE B4 25 253 -39 1 914 309 51 0 0 chr3 43133317 43133356 -116466427 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 914 2038 90 45 57 chr3 43133408 43133739 -116466044 + L1_Mus2 LINE L1 6239 6565 -1 1 914 513 76 0 0 chr3 43133868 43133947 -116465836 + (TC)n Simple_repeat Simple_repeat 2 80 0 1 914 244 259 8 79 chr3 43134061 43134187 -116465596 + Lx5 LINE L1 6931 7047 -3 1 914 1943 228 60 12 chr3 43135083 43135562 -116464221 - RLTR11A2 LTR ERVK 0 527 26 1 914 402 21 0 0 chr3 43136406 43136453 -116463330 + (TCC)n Simple_repeat Simple_repeat 2 48 0 1 914 474 18 0 0 chr3 43136453 43136508 -116463275 + (TC)n Simple_repeat Simple_repeat 1 55 0 1 914 2483 130 21 0 chr3 43136516 43136900 -116462883 - Lx3C LINE L1 -239 6737 6346 2 914 2230 208 39 12 chr3 43137328 43137839 -116461944 - RLTR11A2 LTR ERVK 0 527 3 2 914 24 0 0 0 chr3 43137957 43137981 -116461802 + AT_rich Low_complexity Low_complexity 1 24 0 2 914 299 45 42 70 chr3 43138052 43138123 -116461660 + A-rich Low_complexity Low_complexity 2 70 0 2 914 307 38 38 19 chr3 43138250 43138303 -116461480 + (CAAAAA)n Simple_repeat Simple_repeat 2 55 0 2 914 382 290 180 16 chr3 43138934 43139123 -116460660 - ID_B1 SINE B4 0 224 5 2 914 221 237 34 0 chr3 43139392 43139451 -116460332 + A-rich Low_complexity Low_complexity 2 62 0 2 914 988 92 14 0 chr3 43139704 43139846 -116459937 + B1_Mus1 SINE Alu 5 148 0 2 914 417 152 0 0 chr3 43139847 43139952 -116459831 + A-rich Low_complexity Low_complexity 1 105 0 2 914 666 55 0 0 chr3 43139952 43140043 -116459740 + (CA)n Simple_repeat Simple_repeat 2 92 0 2 914 216 24 48 24 chr3 43140044 43140086 -116459697 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 2 914 375 288 37 90 chr3 43141020 43141264 -116458519 - Lx5 LINE L1 -19 7039 6800 2 914 5968 176 37 5 chr3 43141260 43142519 -116457264 - Lx5 LINE L1 -1098 5952 4644 2 914 4839 152 74 9 chr3 43142519 43143412 -116456371 + RMER17B LTR ERVK 1 951 -7 2 914 6738 194 165 19 chr3 43143451 43143639 -116456144 - Lx5 LINE L1 -1245 4632 4441 2 914 3627 75 30 6 chr3 43143639 43144135 -116455648 - L1_Mus1 LINE L1 0 6567 6060 2 914 6738 194 165 19 chr3 43144135 43145050 -116454733 - Lx5 LINE L1 -1437 4440 3523 2 914 5184 60 0 0 chr3 43145050 43145729 -116454054 + L1Md_F2 LINE L1 5916 6582 0 2 914 6738 194 165 19 chr3 43145729 43146523 -116453260 - Lx5 LINE L1 -2355 3522 2457 2 914 1828 250 98 37 chr3 43146533 43147617 -116452166 + L1VL4 LINE L1 282 1328 -2489 2 914 31800 94 8 26 chr3 43147617 43153652 -116446131 + L1Md_F2 LINE L1 440 6357 -225 2 914 922 101 13 20 chr3 43153645 43153796 -116445987 - L1Md_F3 LINE L1 -674 5910 5761 2 914 22 0 0 0 chr3 43153859 43153881 -116445902 + AT_rich Low_complexity Low_complexity 1 22 0 2 914 240 35 0 0 chr3 43154048 43154077 -116445706 + (TC)n Simple_repeat Simple_repeat 1 29 0 2 914 21 95 0 0 chr3 43154388 43154451 -116445332 + AT_rich Low_complexity Low_complexity 1 63 0 2 914 858 285 81 40 chr3 43154546 43154893 -116444890 + ORR1D2 LTR MaLR 2 362 -8 2 914 357 93 0 0 chr3 43156215 43156269 -116443514 + (TG)n Simple_repeat Simple_repeat 1 54 0 2 914 22 0 0 0 chr3 43156748 43156770 -116443013 + AT_rich Low_complexity Low_complexity 1 22 0 2 914 24 0 0 0 chr3 43157629 43157653 -116442130 + AT_rich Low_complexity Low_complexity 1 24 0 2 914 306 361 52 57 chr3 43158100 43158329 -116441454 + RMER15 LTR ERVL 347 574 -1 2 914 324 0 0 0 chr3 43159366 43159402 -116440381 + (A)n Simple_repeat Simple_repeat 1 36 0 2 914 2325 304 78 40 chr3 43159853 43161116 -116438667 + Lx9 LINE L1 6164 7475 -169 2 914 498 86 21 21 chr3 43161116 43161211 -116438572 + (TCTA)n Simple_repeat Simple_repeat 4 98 0 2 914 3499 150 41 47 chr3 43161611 43162382 -116437401 + RMER17A LTR ERVK 1 751 0 2 914 794 332 39 63 chr3 43164796 43165259 -116434524 - Lx LINE L1 -189 7284 6833 2 914 281 27 81 0 chr3 43165249 43165286 -116434497 - Lx LINE L1 -662 5992 5953 2 914 2915 209 26 10 chr3 43165355 43166092 -116433691 - Lx LINE L1 -949 6524 5911 2 914 4142 202 20 96 chr3 43166138 43166249 -116433534 + Lx5 LINE L1 4383 4503 -1383 2 914 2880 195 76 21 chr3 43166249 43166905 -116432878 - RLTR17 LTR ERVK 0 692 1 2 914 5789 232 26 48 chr3 43166905 43169539 -116430244 + Lx5 LINE L1 4504 7050 0 2 914 243 198 37 12 chr3 43169810 43169892 -116429891 + (TTA)n Simple_repeat Simple_repeat 1 84 0 2 914 454 143 0 19 chr3 43169950 43170057 -116429726 - L1Md_T LINE L1 -1 6581 6477 2 914 181 286 143 0 chr3 43170389 43170452 -116429331 - L2 LINE L2 -611 2808 2737 2 914 2241 248 65 100 chr3 43171197 43172057 -116427726 - Lx9 LINE L1 -2 7642 6813 2 914 21 0 0 0 chr3 43173711 43173732 -116426051 + AT_rich Low_complexity Low_complexity 1 21 0 2 914 21 0 0 0 chr3 43173806 43173827 -116425956 + AT_rich Low_complexity Low_complexity 1 21 0 2 914 530 132 22 7 chr3 43174033 43174170 -116425613 + (TA)n Simple_repeat Simple_repeat 1 139 0 2 914 235 363 24 56 chr3 43174310 43174561 -116425222 - Lx9 LINE L1 -452 7192 6950 2 914 238 225 0 37 chr3 43174549 43174630 -116425153 + L1_Rod LINE L1 4907 4989 -888 2 914 1569 169 11 4 chr3 43174633 43174907 -116424876 + L1Md_T LINE L1 301 576 -6040 2 914 22991 137 37 35 chr3 43174897 43179544 -116420239 + L1Md_T LINE L1 926 5585 -298 2 914 8141 45 1 0 chr3 43179545 43180540 -116419243 + L1Md_T LINE L1 5587 6582 0 2 914 14667 77 8 1 chr3 43180542 43182538 -116417245 + L1Md_F2 LINE L1 3577 5585 -298 2 914 7987 56 1 2 chr3 43182539 43183536 -116416247 + L1Md_F2 LINE L1 5587 6582 0 2 914 238 281 12 12 chr3 43183620 43183703 -116416080 + L1_Rod LINE L1 4952 5034 -813 2 914 2774 22 0 0 chr3 43183697 43184016 -116415767 - L1Md_A LINE L1 -677 5905 5587 2 914 324 98 0 0 chr3 43184046 43184084 -116415699 + (A)n Simple_repeat Simple_repeat 1 38 0 2 914 1515 20 0 61 chr3 43184084 43184310 -116415473 + L1Md_F2 LINE L1 6382 6582 0 2 914 456 306 28 19 chr3 43184310 43184523 -116415260 + L1_Rod LINE L1 5016 5230 -617 2 914 22 0 0 0 chr3 43184650 43184672 -116415111 + AT_rich Low_complexity Low_complexity 1 22 0 2 914 40 73 0 0 chr3 43185079 43185161 -116414622 + AT_rich Low_complexity Low_complexity 1 82 0 2 914 380 245 115 40 chr3 43185870 43186128 -116413655 + Lx7 LINE L1 5880 6172 -1524 2 914 377 172 0 0 chr3 43186120 43186184 -116413599 + Lx7 LINE L1 6276 6339 -1121 2 914 21 0 0 0 chr3 43186335 43186356 -116413427 + AT_rich Low_complexity Low_complexity 1 21 0 2 914 473 292 38 147 chr3 43186469 43186551 -116413232 - MTD-int LTR MaLR -927 331 247 2 914 220 27 54 0 chr3 43186551 43186588 -116413195 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 2 914 589 328 72 30 chr3 43186588 43186869 -116412914 - MTD-int LTR MaLR -1285 295 3 2 914 712 344 34 114 chr3 43186870 43187316 -116412467 - MTD LTR MaLR 0 419 10 2 914 2241 148 40 2 chr3 43187488 43187888 -116411895 + Lx2 LINE L1 6583 6997 0 2 914 967 103 20 7 chr3 43187965 43188111 -116411672 + B1_Mus1 SINE Alu 1 148 0 2 914 243 0 0 0 chr3 43188117 43188144 -116411639 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2 914 647 295 48 6 chr3 43188407 43188721 -116411062 + L1_Mur3 LINE L1 906 1232 -6496 2 914 3256 229 44 100 chr3 43188697 43190168 -116409615 + L1_Mur3 LINE L1 1155 2534 -3346 2 914 602 249 102 87 chr3 43190188 43190452 -116409331 + Lx6 LINE L1 7193 7460 0 2 914 207 88 0 0 chr3 43190776 43190810 -116408973 + (A)n Simple_repeat Simple_repeat 1 34 0 2 914 29 28 0 0 chr3 43190827 43190863 -116408920 + AT_rich Low_complexity Low_complexity 1 36 0 2 914 946 85 69 0 chr3 43191068 43191198 -116408585 + B1_Mus1 SINE Alu 1 139 -9 2 914 324 0 0 0 chr3 43191198 43191234 -116408549 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 2 914 527 190 117 31 chr3 43191396 43191559 -116408224 - Lx7 LINE L1 0 7696 7520 2 914 184 282 14 27 chr3 43191642 43191715 -116408068 + MIR SINE MIR 185 256 -6 2 914 588 14 0 0 chr3 43191853 43191922 -116407861 + (TCTA)n Simple_repeat Simple_repeat 4 72 0 2 914 32 26 0 0 chr3 43192293 43192332 -116407451 + AT_rich Low_complexity Low_complexity 1 39 0 2 914 408 266 6 17 chr3 43192449 43192616 -116407167 - B3A SINE B2 -6 210 6 2 914 353 372 0 0 chr3 43193489 43193591 -116406192 - RSINE1 SINE B4 -19 146 45 2 914 1054 101 0 0 chr3 43193913 43194051 -116405732 + B1_Mm SINE Alu 2 139 -8 2 914 222 0 79 0 chr3 43194051 43194089 -116405694 + (CAA)n Simple_repeat Simple_repeat 2 42 0 2 914 3402 268 19 18 chr3 43196194 43197142 -116402641 + Lx6 LINE L1 5751 6674 -786 2 914 2039 266 68 44 chr3 43197163 43197797 -116401986 + Lx6 LINE L1 6810 7458 -2 2 914 22 0 0 0 chr3 43197797 43197819 -116401964 + AT_rich Low_complexity Low_complexity 1 22 0 2 914 1547 85 36 5 chr3 43198084 43198308 -116401475 - L1Md_F2 LINE L1 -4 6578 6348 2 914 2465 86 3 0 chr3 43198342 43198681 -116401102 + L1_Mm LINE L1 3175 3514 -2369 2 914 202 29 0 54 chr3 43198814 43198851 -116400932 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 2 914 198 128 0 0 chr3 43199549 43199588 -116400195 + (TC)n Simple_repeat Simple_repeat 2 40 0 2 914 183 184 0 0 chr3 43199587 43199625 -116400158 + (TATG)n Simple_repeat Simple_repeat 3 40 0 2 914 296 304 18 53 chr3 43200434 43200604 -116399179 - RSINE1 SINE B4 0 165 2 2 914 306 263 61 74 chr3 43200938 43201086 -116398697 - RMER15 LTR ERVL -157 418 273 2 914 667 82 98 17 chr3 43201376 43201549 -116398234 - RMER17A2 LTR ERVK -400 506 320 2 914 847 164 28 0 chr3 43202135 43202312 -116397471 - Lx2A LINE L1 0 7008 6827 2 914 421 282 53 63 chr3 43202502 43202746 -116397037 + L1M2 LINE L1 4879 5129 -1014 2 914 342 45 0 0 chr3 43202746 43202790 -116396993 + (TG)n Simple_repeat Simple_repeat 2 45 0 2 914 421 282 53 63 chr3 43202790 43202848 -116396935 + L1M2 LINE L1 5130 5178 -965 2 914 464 349 61 0 chr3 43202985 43203183 -116396600 - B3 SINE B2 -5 211 2 2 914 468 51 0 0 chr3 43203239 43203298 -116396485 + (TTCC)n Simple_repeat Simple_repeat 3 61 0 2 914 297 0 0 0 chr3 43203305 43203338 -116396445 + (TTTTA)n Simple_repeat Simple_repeat 2 34 0 2 914 553 273 15 0 chr3 43203341 43203473 -116396310 - B1_Mur3 SINE Alu -13 136 3 2 914 425 330 28 6 chr3 43203632 43203809 -116395974 + B3A SINE B2 4 184 -14 2 914 391 275 120 30 chr3 43203823 43204123 -116395660 + L1M2 LINE L1 5485 5811 -489 2 914 23 0 0 0 chr3 43204693 43204716 -116395067 + AT_rich Low_complexity Low_complexity 1 23 0 2 914 5406 42 0 0 chr3 43205236 43205883 -116393900 + L1Md_T LINE L1 5936 6582 0 2 914 1626 160 3 18 chr3 43206690 43206976 -116392807 + Lx3A LINE L1 6691 6972 -9 2 914 450 0 0 0 chr3 43208278 43208328 -116391455 + (TG)n Simple_repeat Simple_repeat 1 50 0 2 914 180 200 0 0 chr3 43208331 43208381 -116391402 + GA-rich Low_complexity Low_complexity 1 50 0 2 914 279 0 0 0 chr3 43210316 43210347 -116389436 + (TTCA)n Simple_repeat Simple_repeat 2 32 0 2 914 7581 65 0 3 chr3 43210589 43211632 -116388151 - L1Md_F2 LINE L1 -7 6575 5538 2 914 6216 75 2 5 chr3 43211629 43212473 -116387310 + L1Md_F2 LINE L1 4673 5514 -369 2 914 266 357 20 20 chr3 43212522 43212622 -116387161 + B4A SINE B4 189 288 -4 2 914 914 154 0 6 chr3 43214469 43214639 -116385144 + Lx LINE L1 6478 6646 -8 2 914 351 0 0 0 chr3 43214690 43214729 -116385054 + (TA)n Simple_repeat Simple_repeat 2 40 0 2 914 1590 5 0 0 chr3 43215033 43215218 -116384565 + L1Md_T LINE L1 6398 6582 0 3 914 266 333 31 0 chr3 43215235 43215331 -116384452 + ID_B1 SINE B4 123 221 -3 3 914 248 353 76 80 chr3 43216275 43216299 -116383484 - B4 SINE B4 0 292 276 3 914 405 0 0 0 chr3 43216299 43216344 -116383439 + (TG)n Simple_repeat Simple_repeat 1 45 0 3 914 248 353 76 80 chr3 43216344 43216608 -116383175 - B4 SINE B4 -17 275 5 3 914 761 274 25 31 chr3 43217625 43217821 -116381962 - B3 SINE B2 -20 196 2 3 914 636 93 0 0 chr3 43218657 43218754 -116381029 + (TC)n Simple_repeat Simple_repeat 2 98 0 3 914 189 0 0 0 chr3 43219037 43219058 -116380725 + (TTTG)n Simple_repeat Simple_repeat 4 24 0 3 914 579 335 16 5 chr3 43219066 43219255 -116380528 - B3 SINE B2 -10 206 16 3 914 470 386 17 33 chr3 43220007 43220248 -116379535 + B4A SINE B4 3 239 -53 3 914 440 313 85 6 chr3 43220238 43220402 -116379381 + B3A SINE B2 15 191 -7 3 914 207 0 0 0 chr3 43222511 43222534 -116377249 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 3 914 234 150 0 0 chr3 43222548 43222588 -116377195 + (CA)n Simple_repeat Simple_repeat 1 40 0 3 914 200 246 15 30 chr3 43222754 43222821 -116376962 + GA-rich Low_complexity Low_complexity 3 68 0 3 914 2397 135 47 37 chr3 43223494 43223924 -116375859 + Lx LINE L1 6218 6651 -3 3 914 27 29 0 0 chr3 43226387 43226421 -116373362 + AT_rich Low_complexity Low_complexity 1 34 0 3 914 610 306 143 17 chr3 43226536 43226892 -116372891 - RMER5 LTR ERV1 -13 521 121 3 914 263 325 43 93 chr3 43228409 43228548 -116371235 + B4A SINE B4 24 155 -137 3 914 309 258 21 0 chr3 43228674 43228771 -116371012 + CT-rich Low_complexity Low_complexity 2 100 0 3 914 495 60 0 0 chr3 43228772 43228839 -116370944 + (CA)n Simple_repeat Simple_repeat 1 67 0 3 914 24 67 0 0 chr3 43228847 43228892 -116370891 + AT_rich Low_complexity Low_complexity 1 45 0 3 914 411 21 0 0 chr3 43229568 43229616 -116370167 + (CA)n Simple_repeat Simple_repeat 1 48 0 3 914 665 333 123 15 chr3 43229948 43230475 -116369308 - Lx8 LINE L1 -349 7124 6541 3 914 3380 216 63 23 chr3 43230473 43230951 -116368832 + Lx6 LINE L1 4744 5240 -640 3 914 531 121 0 0 chr3 43230951 43231050 -116368733 + (CA)n Simple_repeat Simple_repeat 2 100 0 3 914 3380 216 63 23 chr3 43231050 43231440 -116368343 + Lx6 LINE L1 5241 5647 -233 3 914 929 105 26 7 chr3 43231446 43231600 -116368183 - B2_Mm2 SINE B2 -4 191 35 3 914 819 119 0 0 chr3 43231601 43231727 -116368056 + (GAAA)n Simple_repeat Simple_repeat 4 129 0 3 914 4384 283 43 72 chr3 43231741 43232893 -116366890 + Lx6 LINE L1 5795 6981 -479 3 914 2544 80 20 3 chr3 43232893 43233244 -116366539 - IAPEY2_LTR LTR ERVK 0 357 1 3 914 4384 283 43 72 chr3 43233244 43233800 -116365983 + Lx6 LINE L1 6982 7453 -7 3 914 629 302 40 26 chr3 43233968 43234240 -116365543 - Lx8 LINE L1 -941 6532 6257 3 914 1792 89 0 0 chr3 43234428 43234663 -116365120 - L1_Mus1 LINE L1 -2 6565 6331 3 914 3168 78 0 2 chr3 43234663 43235090 -116364693 + L1_Mus1 LINE L1 5906 6331 -236 3 914 325 110 158 40 chr3 43235209 43235285 -116364498 - L1M4b LINE L1 -5070 2264 2180 3 914 401 378 13 63 chr3 43236190 43236348 -116363435 + RSINE1 SINE B4 16 165 0 3 914 316 354 102 17 chr3 43236840 43237133 -116362650 + L2 LINE L2 2005 2322 -1097 3 914 390 322 95 72 chr3 43237428 43237652 -116362131 - MER67C LTR ERV1 -215 496 278 3 914 1355 165 41 15 chr3 43237652 43237922 -116361861 + Lx LINE L1 6378 6654 0 3 914 390 322 95 72 chr3 43237922 43238045 -116361738 - MER67C LTR ERV1 -434 277 141 3 914 270 0 0 0 chr3 43238130 43238160 -116361623 + (T)n Simple_repeat Simple_repeat 1 30 0 3 914 363 60 0 0 chr3 43238557 43238607 -116361176 + (CA)n Simple_repeat Simple_repeat 1 50 0 3 914 189 196 0 0 chr3 43238825 43238871 -116360912 + (CA)n Simple_repeat Simple_repeat 1 46 0 3 914 1469 189 58 13 chr3 43240094 43240404 -116359379 - RMER6C LTR ERVK -366 324 1 3 914 464 343 37 47 chr3 43240525 43240739 -116359044 + RMER15 LTR ERVL 273 484 -91 3 914 459 92 0 0 chr3 43240774 43240839 -116358944 + (TA)n Simple_repeat Simple_repeat 1 65 0 3 914 2930 26 3 3 chr3 43240994 43241340 -116358443 + ORR1A0 LTR MaLR 1 346 0 3 914 785 269 78 9 chr3 43241347 43241579 -116358204 - MTD LTR MaLR -2 417 170 3 914 946 142 0 0 chr3 43241647 43241788 -116357995 + B1_Mus1 SINE Alu 2 142 -6 3 914 291 71 0 0 chr3 43241792 43241834 -116357949 + (CAAAA)n Simple_repeat Simple_repeat 4 45 0 3 914 350 245 31 21 chr3 43241839 43241935 -116357848 - MTD LTR MaLR -318 101 5 3 914 337 338 34 20 chr3 43241936 43242084 -116357699 - Lx8 LINE L1 -206 7267 7118 3 914 1061 342 64 25 chr3 43242264 43242936 -116356847 - Lx7 LINE L1 -856 6840 6143 3 914 3872 112 17 0 chr3 43243477 43244051 -116355732 + L1_Mus3 LINE L1 6048 6631 -7 3 914 300 294 99 59 chr3 43244289 43244441 -116355342 - HAL1-3A_ME LINE L1 -419 2439 2282 3 914 180 0 0 0 chr3 43244512 43244532 -116355251 + (ATTG)n Simple_repeat Simple_repeat 1 20 0 3 914 2091 161 54 5 chr3 43244532 43244635 -116355148 - Lx LINE L1 -16 6638 6537 3 914 213 39 0 0 chr3 43244635 43244661 -116355122 + (CCCA)n Simple_repeat Simple_repeat 4 29 0 3 914 2091 161 54 5 chr3 43244661 43244945 -116354838 - Lx LINE L1 -118 6536 6234 3 914 283 331 56 0 chr3 43245132 43245274 -116354509 - L1MA5 LINE L1 -4 6296 6147 3 914 690 219 182 0 chr3 43245637 43245824 -116353959 + URR1A DNA MER1_type 6 226 0 3 914 873 314 178 6 chr3 43246554 43247038 -116352745 - MER67C LTR ERV1 -128 583 17 3 914 368 20 20 0 chr3 43247463 43247512 -116352271 + (TTTTA)n Simple_repeat Simple_repeat 4 53 0 3 914 2299 228 74 2 chr3 43247545 43248042 -116351741 - RMER19A LTR ERVK -204 533 1 3 914 1359 281 157 42 chr3 43248112 43248655 -116351128 - RMER20B LTR ERVK -22 605 1 3 914 231 327 39 39 chr3 43249770 43249926 -116349857 - Lx8 LINE L1 -1146 6327 6172 3 914 180 152 0 0 chr3 43249932 43249965 -116349818 + (CA)n Simple_repeat Simple_repeat 2 34 0 3 914 320 151 0 0 chr3 43249968 43250021 -116349762 + HAL1-3A_ME LINE L1 1976 2028 -830 3 914 482 317 155 24 chr3 43250173 43250412 -116349371 + RMER15 LTR ERVL 27 298 -277 3 914 536 264 130 78 chr3 43250412 43250757 -116349026 - RLTR9A LTR ERVK -2 366 4 3 914 469 272 7 14 chr3 43250790 43250928 -116348855 + RMER15 LTR ERVL 275 411 -164 3 914 1844 61 0 0 chr3 43250929 43251157 -116348626 + L1Md_F2 LINE L1 5358 5585 -298 3 914 7323 73 8 1 chr3 43251158 43252136 -116347647 + L1Md_F2 LINE L1 5587 6571 -11 3 914 226 279 63 0 chr3 43252178 43252257 -116347526 + RMER15 LTR ERVL 492 575 0 3 914 746 338 23 35 chr3 43252299 43252642 -116347141 + Lx7 LINE L1 6344 6682 -1014 3 914 219 36 0 0 chr3 43252726 43252754 -116347029 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 3 914 225 356 25 25 chr3 43252810 43252931 -116346852 + Lx7 LINE L1 6889 7009 -687 3 914 27 0 0 0 chr3 43252965 43252992 -116346791 + AT_rich Low_complexity Low_complexity 1 27 0 3 915 34 79 0 0 chr3 43253955 43254031 -116345752 + AT_rich Low_complexity Low_complexity 1 76 0 3 915 3525 198 78 8 chr3 43254035 43254763 -116345020 - Lx4A LINE L1 -2 7056 6278 3 915 913 204 138 17 chr3 43254769 43255008 -116344775 + RLTR22_Mur LTR ERVK 1 268 -1580 3 915 8578 129 12 19 chr3 43255021 43256079 -116343704 - Lx3A LINE L1 -26 6955 5908 3 915 222 37 0 0 chr3 43256079 43256106 -116343677 + (TTTTC)n Simple_repeat Simple_repeat 4 30 0 3 915 16086 121 24 49 chr3 43256106 43256718 -116343065 - Lx3A LINE L1 -1074 5907 5298 3 915 324 70 0 0 chr3 43256718 43256761 -116343022 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 3 915 16086 121 24 51 chr3 43256761 43257944 -116341839 - Lx3A LINE L1 -589 5297 4075 3 915 1822 54 0 0 chr3 43257944 43258168 -116341615 + L1Md_T LINE L1 6357 6580 -2 3 915 16086 121 24 51 chr3 43258168 43259301 -116340482 - Lx3A LINE L1 -1812 4074 3056 3 915 1810 202 91 48 chr3 43259301 43259826 -116339957 + RLTR22_Mur LTR ERVK 262 809 -1039 3 915 231 158 0 0 chr3 43260040 43260078 -116339705 + RLTR22_Mur LTR ERVK 1590 1627 -221 3 915 1031 128 113 0 chr3 43260092 43260287 -116339496 - Lx4A LINE L1 -946 6112 5896 3 915 267 122 0 24 chr3 43260285 43260327 -116339456 + Lx5 LINE L1 5869 5909 -1141 3 915 466 259 9 0 chr3 43260327 43260439 -116339344 - Lx6 LINE L1 -421 7039 6927 3 915 1306 179 84 3 chr3 43260433 43260718 -116339065 - L1_Mur3 LINE L1 -726 5154 4847 3 915 238 390 33 33 chr3 43260955 43261077 -116338706 - B4A SINE B4 -168 124 3 3 915 25 0 0 0 chr3 43261738 43261763 -116338020 + AT_rich Low_complexity Low_complexity 1 25 0 3 915 28 29 0 0 chr3 43263486 43263521 -116336262 + AT_rich Low_complexity Low_complexity 1 35 0 3 915 25 51 0 0 chr3 43263708 43263747 -116336036 + AT_rich Low_complexity Low_complexity 1 39 0 3 915 5679 51 0 11 chr3 43263905 43264634 -116335149 + L1Md_F2 LINE L1 5862 6582 0 3 915 1388 67 0 0 chr3 43265070 43265250 -116334533 + L1_Mus1 LINE L1 6381 6560 -7 3 915 342 0 0 0 chr3 43266482 43266520 -116333263 + (CA)n Simple_repeat Simple_repeat 2 39 0 3 915 313 338 33 26 chr3 43266554 43266706 -116333077 + MLT1D LTR MaLR 353 505 0 3 915 21 0 0 0 chr3 43266868 43266889 -116332894 + AT_rich Low_complexity Low_complexity 1 21 0 3 915 367 301 29 44 chr3 43267309 43267444 -116332339 - L1M2 LINE L1 -880 5263 5133 3 915 512 73 12 0 chr3 43267444 43267526 -116332257 + (TTTA)n Simple_repeat Simple_repeat 2 84 0 3 915 1018 88 0 0 chr3 43267526 43267662 -116332121 - B1_Mus1 SINE Alu -12 136 1 3 915 367 301 29 44 chr3 43267662 43267799 -116331984 - L1M2 LINE L1 -1011 5132 4995 3 915 3799 124 4 2 chr3 43268798 43269361 -116330422 - Lx LINE L1 -8 6646 6083 3 915 781 180 0 0 chr3 43269362 43269501 -116330282 - Lx2 LINE L1 -751 6246 6108 3 915 213 235 0 0 chr3 43269716 43269767 -116330016 + T-rich Low_complexity Low_complexity 1 51 0 3 915 224 30 30 0 chr3 43269767 43269800 -116329983 + (GTTTG)n Simple_repeat Simple_repeat 2 35 0 3 915 1062 96 7 0 chr3 43269800 43269946 -116329837 - B1_Mus1 SINE Alu -1 147 1 3 915 550 356 42 21 chr3 43269962 43270246 -116329537 + B4A SINE B4 3 292 0 3 915 258 32 0 0 chr3 43270263 43270294 -116329489 + (CAT)n Simple_repeat Simple_repeat 3 33 0 3 915 33114 13 0 0 chr3 43270396 43274225 -116325558 + L1Md_A LINE L1 1757 5586 -297 3 915 8757 16 0 0 chr3 43274225 43275220 -116324563 + L1Md_A LINE L1 5587 6581 -1 3 915 191 32 0 61 chr3 43275234 43275267 -116324516 + (TTTTTA)n Simple_repeat Simple_repeat 6 36 0 3 915 410 285 141 37 chr3 43275269 43275404 -116324379 - B1_Mur3 SINE Alu 0 149 1 3 915 2758 242 26 28 chr3 43275406 43276059 -116323724 + RMER1B Other Other 402 1053 -13 3 915 4040 132 50 3 chr3 43276061 43276728 -116323055 + Lx3A LINE L1 6281 6978 -3 3 915 216 135 0 0 chr3 43276746 43276783 -116323000 + (A)n Simple_repeat Simple_repeat 1 37 0 3 915 239 326 53 60 chr3 43277076 43277226 -116322557 + L2 LINE L2 2684 2832 -587 4 915 29 47 0 0 chr3 43277880 43277923 -116321860 + AT_rich Low_complexity Low_complexity 1 43 0 4 915 24 32 0 0 chr3 43277970 43278001 -116321782 + AT_rich Low_complexity Low_complexity 1 31 0 4 915 29342 109 50 3 chr3 43278132 43279687 -116320096 + L1Md_F2 LINE L1 356 1978 -3905 4 915 730 70 18 0 chr3 43279687 43279801 -116319982 + (TA)n Simple_repeat Simple_repeat 1 116 0 4 915 29342 86 32 7 chr3 43279801 43283313 -116316470 + L1Md_F2 LINE L1 1979 5584 -299 4 915 6736 103 3 25 chr3 43283314 43284333 -116315450 + L1Md_F2 LINE L1 5587 6582 0 4 915 209 219 16 0 chr3 43284611 43284675 -116315108 + A-rich Low_complexity Low_complexity 2 66 0 4 915 614 245 82 34 chr3 43284804 43285011 -116314772 + ORR1D2 LTR MaLR 152 368 -2 4 915 21 0 0 0 chr3 43286337 43286358 -116313425 + AT_rich Low_complexity Low_complexity 1 21 0 4 915 210 118 0 0 chr3 43287157 43287191 -116312592 + (TTA)n Simple_repeat Simple_repeat 2 35 0 4 915 514 222 75 201 chr3 43289114 43289235 -116310548 - URR1A DNA MER1_type -4 222 140 4 915 516 32 0 0 chr3 43289235 43289297 -116310486 + (TTCTG)n Simple_repeat Simple_repeat 4 65 0 4 915 837 138 46 0 chr3 43289297 43289427 -116310356 - B1_Mus1 SINE Alu -12 136 1 4 915 260 53 0 26 chr3 43289437 43289476 -116310307 + (TTA)n Simple_repeat Simple_repeat 2 39 0 4 915 514 222 75 201 chr3 43289476 43289596 -116310187 - URR1A DNA MER1_type -87 139 2 4 915 37828 30 0 0 chr3 43289875 43296084 -116303699 - L1Md_T LINE L1 0 6585 277 4 915 636 81 0 0 chr3 43297152 43297239 -116302544 + (TTTC)n Simple_repeat Simple_repeat 2 88 0 4 915 210 260 32 45 chr3 43297299 43297320 -116302463 + T-rich Low_complexity Low_complexity 139 159 0 4 915 379 384 5 0 chr3 43297320 43297531 -116302252 - B3 SINE B2 0 216 5 4 915 210 260 32 45 chr3 43297531 43297666 -116302117 + T-rich Low_complexity Low_complexity 5 138 0 4 915 16708 73 7 0 chr3 43297993 43300207 -116299576 + L1Md_F2 LINE L1 3358 5586 -297 4 915 7709 67 3 0 chr3 43300207 43301198 -116298585 + L1Md_F2 LINE L1 5587 6580 -2 4 915 414 0 0 0 chr3 43301365 43301411 -116298372 + (TG)n Simple_repeat Simple_repeat 1 46 0 4 915 275 333 43 50 chr3 43301481 43301642 -116298141 - RSINE1 SINE B4 0 165 6 4 915 1028 113 7 0 chr3 43302006 43302147 -116297636 - B1_Mus2 SINE Alu -5 142 1 4 915 417 300 1 1 chr3 43303241 43303387 -116296396 + Lx5 LINE L1 902 1047 -5610 4 915 7926 86 5 13 chr3 43303421 43304600 -116295183 - L1Md_F2 LINE L1 -12 6570 5405 4 915 222 37 0 0 chr3 43304600 43304627 -116295156 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 4 915 7926 82 3 14 chr3 43304627 43305234 -116294549 - L1Md_F2 LINE L1 -479 5404 4801 4 915 283 85 119 0 chr3 43305236 43305295 -116294488 + Lx5 LINE L1 1075 1140 -5946 4 915 1976 212 59 21 chr3 43305293 43305819 -116293964 + Lx5 LINE L1 2076 2621 -3256 4 915 1680 100 4 0 chr3 43305824 43306055 -116293728 - L1_Mus3 LINE L1 -147 6491 6260 4 915 516 140 26 0 chr3 43306076 43306190 -116293593 + L1_Mus3 LINE L1 6515 6631 -7 4 915 6141 216 69 16 chr3 43306217 43307147 -116292636 + Lx5 LINE L1 3627 4632 -1245 4 915 198 0 0 0 chr3 43307147 43307169 -116292614 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 4 915 6141 216 69 16 chr3 43307169 43307809 -116291974 + Lx5 LINE L1 4633 5278 -599 4 915 692 286 44 21 chr3 43307808 43308146 -116291637 + Lx3B LINE L1 6616 6974 -2 4 915 204 40 0 0 chr3 43308146 43308171 -116291612 + (TTAA)n Simple_repeat Simple_repeat 2 26 0 4 915 6507 217 35 23 chr3 43308179 43309903 -116289880 + Lx5 LINE L1 5292 7050 0 4 915 33 43 0 0 chr3 43310013 43310060 -116289723 + AT_rich Low_complexity Low_complexity 1 47 0 4 915 228 244 30 91 chr3 43311341 43311440 -116288343 + Tigger5 DNA MER2_type 274 366 -2040 4 915 422 375 90 0 chr3 43312265 43312409 -116287374 + B3 SINE B2 3 159 -57 4 915 447 19 0 0 chr3 43312410 43312462 -116287321 + (CA)n Simple_repeat Simple_repeat 1 52 0 4 915 1689 219 5 53 chr3 43312465 43312860 -116286923 - ORR1C1 LTR MaLR -2 376 1 4 915 183 100 0 0 chr3 43314152 43314182 -116285601 + (CAA)n Simple_repeat Simple_repeat 2 31 0 4 915 294 115 0 0 chr3 43314651 43314703 -116285080 + (TG)n Simple_repeat Simple_repeat 2 53 0 4 915 314 307 200 24 chr3 43314718 43314888 -116284895 - B4 SINE B4 -88 204 5 4 915 25 51 0 0 chr3 43315023 43315062 -116284721 + AT_rich Low_complexity Low_complexity 1 39 0 4 915 236 362 46 30 chr3 43315301 43315432 -116284351 - B3A SINE B2 -65 133 1 4 915 21 0 0 0 chr3 43315667 43315688 -116284095 + AT_rich Low_complexity Low_complexity 1 21 0 4 915 203 0 0 36 chr3 43316019 43316047 -116283736 + (TTA)n Simple_repeat Simple_repeat 1 27 0 4 915 4256 162 24 25 chr3 43316389 43317199 -116282584 + RMER17D2 LTR ERVK 1 809 0 4 915 226 379 17 17 chr3 43317202 43317320 -116282463 + MLT2D LTR ERVL 442 559 -1 4 915 243 105 0 0 chr3 43317414 43317452 -116282331 - Lx2B LINE L1 -610 6390 6353 4 915 3863 165 45 14 chr3 43317450 43318187 -116281596 + Lx2 LINE L1 5606 6365 -632 4 915 604 350 68 34 chr3 43318405 43319424 -116280359 + ERVL-B4-int LTR ERVL 3644 4771 -990 4 915 30456 102 8 14 chr3 43319593 43324792 -116274991 + L1Md_F2 LINE L1 420 5585 -298 4 915 7507 73 4 1 chr3 43324793 43325783 -116274000 + L1Md_F2 LINE L1 5587 6579 -3 4 915 684 188 0 36 chr3 43325829 43325967 -116273816 - B1_Mus1 SINE Alu -13 135 3 4 915 1109 273 30 11 chr3 43326655 43327022 -116272761 - ORR1D1 LTR MaLR 0 374 1 4 915 567 142 0 0 chr3 43327877 43327983 -116271800 + (TA)n Simple_repeat Simple_repeat 2 107 0 4 915 1446 114 42 50 chr3 43328656 43328915 -116270868 - L1Md_F2 LINE L1 0 6582 6326 4 915 1100 239 14 29 chr3 43329378 43329654 -116270129 - Lx2A1 LINE L1 -2 7006 6735 4 915 726 44 0 0 chr3 43331331 43331421 -116268362 + (TTTTC)n Simple_repeat Simple_repeat 3 92 0 4 915 336 24 0 0 chr3 43331421 43331462 -116268321 + (TC)n Simple_repeat Simple_repeat 1 41 0 4 915 384 22 0 0 chr3 43331462 43331507 -116268276 + (TA)n Simple_repeat Simple_repeat 2 46 0 4 915 506 256 43 68 chr3 43332369 43332638 -116267145 - Lx7 LINE L1 -16 7680 7187 4 915 669 241 15 0 chr3 43332712 43332849 -116266934 + B1_Mur4 SINE Alu 6 144 -6 4 915 24 0 0 0 chr3 43332849 43332873 -116266910 + AT_rich Low_complexity Low_complexity 1 24 0 4 915 21 0 0 0 chr3 43333418 43333439 -116266344 + AT_rich Low_complexity Low_complexity 1 21 0 4 915 453 36 0 0 chr3 43333476 43333531 -116266252 + (GAAA)n Simple_repeat Simple_repeat 2 56 0 4 915 316 277 0 0 chr3 43333762 43333827 -116265956 - HAL1-3A_ME LINE L1 -818 2040 1976 4 915 361 331 36 48 chr3 43333842 43334010 -116265773 - B3A SINE B2 -18 180 15 4 915 548 320 82 44 chr3 43334920 43335126 -116264657 + B3 SINE B2 1 214 -2 4 915 21 57 0 0 chr3 43335126 43335161 -116264622 + AT_rich Low_complexity Low_complexity 1 35 0 4 915 464 295 26 0 chr3 43336043 43336199 -116263584 + L1Md_F2 LINE L1 675 834 -5782 4 915 20162 161 26 14 chr3 43336333 43340096 -116259687 + L1Md_F2 LINE L1 823 4640 -1243 4 915 242 29 29 0 chr3 43340096 43340131 -116259652 + (CAA)n Simple_repeat Simple_repeat 2 37 0 4 915 20162 161 30 14 chr3 43340131 43340645 -116259138 + L1Md_F2 LINE L1 4641 5154 -729 4 915 624 155 0 0 chr3 43340637 43340740 -116259043 + L1Md_F2 LINE L1 5645 5747 -835 4 915 2974 138 12 23 chr3 43340740 43341388 -116258395 + L1_Mus3 LINE L1 5607 6227 -355 4 915 480 316 112 67 chr3 43341388 43341673 -116258110 - MTE2b LTR MaLR -76 303 6 4 915 738 216 0 0 chr3 43342028 43342199 -116257584 + GA-rich Low_complexity Low_complexity 2 172 0 4 915 1197 45 11 33 chr3 43342210 43342392 -116257391 + (GGAGAA)n Simple_repeat Simple_repeat 1 178 0 4 915 832 138 54 0 chr3 43342414 43342544 -116257239 + B1_Mus1 SINE Alu 3 139 -9 4 915 285 51 0 0 chr3 43342544 43342583 -116257200 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 4 915 290 91 0 0 chr3 43342628 43342672 -116257111 + B1_Mm SINE Alu 99 142 -5 4 915 372 43 0 0 chr3 43342674 43342720 -116257063 + (TAAA)n Simple_repeat Simple_repeat 2 47 0 4 915 911 120 38 0 chr3 43342722 43342880 -116256903 - RLTR10 LTR ERVK 0 390 227 4 915 2481 41 0 6 chr3 43342938 43343258 -116256525 - RLTR10 LTR ERVK -72 318 1 4 915 17028 23 4 13 chr3 43343260 43345262 -116254521 - RLTR10-int LTR ERVK -3 1984 1 4 915 893 122 39 0 chr3 43345264 43345420 -116254363 - RLTR10 LTR ERVK -2 388 227 4 915 2502 38 0 6 chr3 43345478 43345798 -116253985 - RLTR10 LTR ERVK -72 318 1 4 915 720 249 138 8 chr3 43345844 43346091 -116253692 - Lx6 LINE L1 -320 7140 6862 4 915 5240 50 2 0 chr3 43346839 43347481 -116252302 + L1Md_F2 LINE L1 5587 6229 -353 4 915 1289 47 12 6 chr3 43347481 43347654 -116252129 + L1Md_F2 LINE L1 6409 6582 0 4 915 477 0 0 0 chr3 43347911 43347964 -116251819 + (TA)n Simple_repeat Simple_repeat 1 53 0 4 915 4111 68 0 0 chr3 43347964 43348493 -116251290 + L1Md_F3 LINE L1 5058 5586 -297 4 915 7551 56 18 0 chr3 43348493 43349463 -116250320 + L1Md_F3 LINE L1 5587 6573 -11 4 915 233 394 89 74 chr3 43350202 43350471 -116249312 - B4 SINE B4 -12 280 8 4 915 3515 23 0 0 chr3 43350893 43351289 -116248494 + MTA_Mm LTR MaLR 1 396 0 4 915 9207 35 2 1 chr3 43351289 43352386 -116247397 + MTA_Mm-int LTR MaLR 1 1098 0 4 915 3515 23 0 0 chr3 43352386 43352782 -116247001 + MTA_Mm LTR MaLR 1 396 0 4 915 245 203 15 15 chr3 43355548 43355613 -116244170 + CT-rich Low_complexity Low_complexity 1 65 0 4 915 21 0 0 0 chr3 43355702 43355723 -116244060 + AT_rich Low_complexity Low_complexity 1 21 0 4 915 6326 75 30 30 chr3 43355823 43356739 -116243044 + L1_Mus2 LINE L1 5651 6566 0 4 915 970 288 29 11 chr3 43357231 43357508 -116242275 - Lx6 LINE L1 0 7460 7179 4 915 23517 39 2 0 chr3 43357507 43362399 -116237384 - L1Md_Gf LINE L1 -1675 4211 1 4 915 269 333 36 9 chr3 43362515 43362627 -116237156 + MER20 DNA MER1_type 90 204 -15 4 915 324 0 0 0 chr3 43362824 43362860 -116236923 + (CA)n Simple_repeat Simple_repeat 2 37 0 4 915 367 313 103 12 chr3 43363434 43363599 -116236184 - ORR1E LTR MaLR -179 180 1 4 915 6433 120 54 2 chr3 43363802 43364807 -116234976 - Lx LINE L1 -2 6652 5596 4 915 328 303 22 15 chr3 43364996 43365130 -116234653 - Lx9 LINE L1 -206 7438 7304 4 915 366 269 52 9 chr3 43365191 43365307 -116234476 - Lx9 LINE L1 -452 7192 7072 4 915 3532 88 2 14 chr3 43366827 43367320 -116232463 - L1_Mus2 LINE L1 0 6566 6080 4 915 418 365 22 50 chr3 43367399 43367578 -116232205 + B3A SINE B2 9 182 -16 4 915 28 48 0 0 chr3 43367621 43367663 -116232120 + AT_rich Low_complexity Low_complexity 1 42 0 4 915 224 296 0 27 chr3 43367907 43367980 -116231803 + GA-rich Low_complexity Low_complexity 4 74 0 4 915 850 46 8 0 chr3 43368057 43368188 -116231595 - MusHAL1 LINE L1 -1 2711 2580 4 915 588 302 61 91 chr3 43368246 43368588 -116231195 - MTEb LTR MaLR -17 362 31 4 915 219 69 0 0 chr3 43368595 43368624 -116231159 + (TTTG)n Simple_repeat Simple_repeat 1 29 0 5 915 3041 257 88 14 chr3 43369441 43370316 -116229467 + Lx7 LINE L1 6307 7246 -450 5 915 1557 148 77 3 chr3 43370488 43370773 -116229010 - Lx LINE L1 -7 6647 6342 5 915 265 233 8 8 chr3 43370901 43371018 -116228765 + (TG)n Simple_repeat Simple_repeat 2 118 0 5 915 229 143 20 20 chr3 43371051 43371101 -116228682 + (TG)n Simple_repeat Simple_repeat 1 50 0 5 915 330 215 0 15 chr3 43371145 43371211 -116228572 - B4A SINE B4 -42 250 186 5 915 32 26 0 0 chr3 43372534 43372573 -116227210 + AT_rich Low_complexity Low_complexity 1 39 0 5 915 372 59 0 0 chr3 43372597 43372648 -116227135 + (TG)n Simple_repeat Simple_repeat 2 52 0 5 915 692 236 0 8 chr3 43374431 43374670 -116225113 + CT-rich Low_complexity Low_complexity 1 236 0 5 915 235 250 0 0 chr3 43374976 43375036 -116224747 - B3 SINE B2 -5 211 152 5 915 25 0 0 0 chr3 43375745 43375770 -116224013 + AT_rich Low_complexity Low_complexity 1 25 0 5 915 7994 63 0 0 chr3 43376411 43377445 -116222338 - L1_Mm LINE L1 -739 5144 4111 5 915 321 28 0 0 chr3 43377443 43377479 -116222304 + L1Md_F3 LINE L1 5551 5586 -297 5 915 7980 39 9 1 chr3 43377479 43378468 -116221315 + L1Md_F3 LINE L1 5587 6583 -1 5 915 205 224 26 26 chr3 43379189 43379267 -116220516 + T-rich Low_complexity Low_complexity 6 83 0 5 915 4225 230 68 6 chr3 43380090 43381118 -116218665 - Lx3C LINE L1 -3 7055 5896 5 915 1554 218 74 20 chr3 43381125 43381317 -116218466 - L1VL4 LINE L1 -2455 1459 1251 5 915 198 0 0 0 chr3 43381317 43381339 -116218444 + (TTG)n Simple_repeat Simple_repeat 3 24 0 5 915 1554 251 71 22 chr3 43381339 43381789 -116217994 - L1VL4 LINE L1 -5474 1250 808 5 915 298 350 89 42 chr3 43382282 43382518 -116217265 - RLTR18B LTR ERVK -78 434 188 5 915 962 129 0 0 chr3 43382518 43382658 -116217125 + B1_Mus1 SINE Alu 2 141 -7 5 915 221 128 0 21 chr3 43382669 43382717 -116217066 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 5 915 294 335 128 32 chr3 43382788 43382976 -116216807 - RLTR18B LTR ERVK -235 277 72 5 915 279 257 0 0 chr3 43382976 43383046 -116216737 + Lx3C LINE L1 6898 6967 -9 5 915 1459 272 54 84 chr3 43383450 43384080 -116215703 - RMER19C LTR ERVK 0 611 1 5 915 286 307 69 10 chr3 43384153 43384255 -116215528 - MTEb LTR MaLR -2 377 270 5 114 3132 153 0 4 chr3 43384329 43384841 -116214942 - Lx LINE L1 -370 6284 5775 5 916 2474 91 0 0 chr3 43384839 43385178 -116214605 - L1Md_F2 LINE L1 -603 5979 5641 5 916 1019 185 20 0 chr3 43385183 43385383 -116214400 + L1_Mm LINE L1 5417 5620 -263 5 916 270 353 65 50 chr3 43385396 43385596 -116214187 + MLT1A0 LTR MaLR 126 328 -37 5 916 23 0 0 0 chr3 43385765 43385788 -116213995 + AT_rich Low_complexity Low_complexity 1 23 0 5 916 273 230 0 0 chr3 43386234 43386308 -116213475 + (TG)n Simple_repeat Simple_repeat 1 74 0 5 916 406 321 6 0 chr3 43386320 43386479 -116213304 + (TG)n Simple_repeat Simple_repeat 1 160 0 5 916 425 62 15 0 chr3 43386524 43386589 -116213194 + (TG)n Simple_repeat Simple_repeat 1 66 0 5 916 237 33 0 0 chr3 43386810 43386840 -116212943 + (TTAA)n Simple_repeat Simple_repeat 4 33 0 5 916 1808 87 0 0 chr3 43386840 43387081 -116212702 - L1_Mus1 LINE L1 -6 6561 6321 5 916 508 312 126 16 chr3 43387094 43387403 -116212380 - Tigger1 DNA MER2_type -51 2367 2025 5 916 1344 327 132 18 chr3 43387527 43388667 -116211116 - Tigger1 DNA MER2_type -1017 1401 131 5 916 665 118 9 0 chr3 43388672 43388782 -116211001 + (TCTA)n Simple_repeat Simple_repeat 4 114 0 5 916 305 374 32 0 chr3 43388785 43388889 -116210894 - B1F1 SINE Alu -8 109 4 5 916 2104 244 82 22 chr3 43389150 43389750 -116210033 - RMER1B Other Other 0 1066 431 5 916 824 338 48 19 chr3 43389732 43390000 -116209783 - RMER1A Other Other -717 313 38 5 916 703 301 85 52 chr3 43390084 43390389 -116209394 - RMER1B Other Other -586 480 166 5 916 1344 211 43 93 chr3 43390412 43390584 -116209199 + RMER6C LTR ERVK 3 189 -501 5 916 5547 141 91 6 chr3 43390584 43391576 -116208207 + Lx3A LINE L1 5901 6976 -5 5 916 441 0 0 0 chr3 43391576 43391625 -116208158 + (TAGA)n Simple_repeat Simple_repeat 2 50 0 5 916 1344 211 43 93 chr3 43391625 43391827 -116207956 + RMER6C LTR ERVK 190 358 -332 5 916 220 288 18 0 chr3 43391898 43392009 -116207774 + (CAGTT)n Simple_repeat Simple_repeat 5 117 0 5 916 369 195 23 0 chr3 43392058 43392145 -116207638 - Lx3C LINE L1 -1 6975 6887 5 916 336 368 15 0 chr3 43392182 43392315 -116207468 - B3A SINE B2 -63 135 1 5 916 555 16 0 0 chr3 43392981 43393045 -116206738 + (TCC)n Simple_repeat Simple_repeat 3 66 0 5 916 553 279 84 41 chr3 43393282 43393656 -116206127 + RLTR45 LTR ERVK 42 482 0 5 916 304 299 189 43 chr3 43394124 43394404 -116205379 + L1M5 LINE L1 2429 2749 -3397 5 916 472 327 81 17 chr3 43394774 43394948 -116204835 - B3A SINE B2 -1 197 13 5 916 309 51 0 0 chr3 43395611 43395650 -116204133 + (CA)n Simple_repeat Simple_repeat 1 39 0 5 916 1049 102 0 7 chr3 43396216 43396364 -116203419 + B1_Mus1 SINE Alu 2 148 0 5 916 1103 164 36 0 chr3 43396381 43396601 -116203182 + Lx3_Mus LINE L1 6782 7009 0 5 916 235 140 35 17 chr3 43396655 43396713 -116203070 + A-rich Low_complexity Low_complexity 2 60 0 5 916 213 94 0 0 chr3 43397234 43397266 -116202517 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 5 916 266 330 32 11 chr3 43398863 43398958 -116200825 + RSINE1 SINE B4 12 108 -57 5 916 1475 12 0 6 chr3 43399227 43399401 -116200382 + (TTTCC)n Simple_repeat Simple_repeat 4 176 0 5 916 7430 171 16 14 chr3 43399436 43401722 -116198061 - Lx LINE L1 -10 6644 4349 5 916 1249 346 48 17 chr3 43402414 43402934 -116196849 + RMER15 LTR ERVL 22 557 -18 5 916 403 90 26 0 chr3 43403637 43403715 -116196068 + (TTTG)n Simple_repeat Simple_repeat 1 80 0 5 916 250 291 74 53 chr3 43403721 43403910 -116195873 - RLTR15 LTR ERVK -141 218 26 5 916 3860 223 39 56 chr3 43403997 43404731 -116195052 - MYSERV6-int LTR ERVK -54 8905 8183 5 916 641 76 11 0 chr3 43404741 43404833 -116194950 + (TCTA)n Simple_repeat Simple_repeat 1 93 0 5 916 1008 84 28 0 chr3 43404833 43404964 -116194819 - B1_Mus1 SINE Alu -11 137 3 5 916 3860 223 39 56 chr3 43404964 43405341 -116194442 - MYSERV6-int LTR ERVK -777 8182 7813 5 916 393 304 51 72 chr3 43405420 43405657 -116194126 - RMER4A LTR ERVK -20 565 225 5 916 391 320 33 0 chr3 43405760 43405913 -116193870 - MYSERV16_I-int LTR ERVK -1573 753 596 5 916 218 161 18 18 chr3 43405914 43405971 -116193812 + (TTTG)n Simple_repeat Simple_repeat 2 58 0 5 916 1950 289 58 39 chr3 43405975 43406814 -116192969 - MYSERV-int LTR ERVK -1921 4629 3775 5 916 2779 185 32 0 chr3 43407040 43407547 -116192236 - Lx2 LINE L1 -2 6995 6473 5 916 401 0 20 0 chr3 43407617 43407666 -116192117 + (TAA)n Simple_repeat Simple_repeat 2 51 0 5 916 4810 151 26 40 chr3 43407706 43408496 -116191287 - Lx2 LINE L1 -519 6478 5677 5 916 1037 106 0 0 chr3 43408496 43408638 -116191145 + B1_Mm SINE Alu 1 142 -5 5 916 4810 151 26 40 chr3 43408638 43408661 -116191122 - Lx2 LINE L1 -1321 5676 5676 5 916 342 0 0 0 chr3 43408661 43408699 -116191084 + (TAAA)n Simple_repeat Simple_repeat 3 40 0 5 916 4810 164 15 67 chr3 43408699 43408892 -116190891 - Lx2 LINE L1 -207 5676 5485 5 916 726 279 32 63 chr3 43409585 43409933 -116189850 - RLTR15 LTR ERVK -22 337 1 5 916 540 0 0 0 chr3 43410100 43410160 -116189623 + (TC)n Simple_repeat Simple_repeat 1 60 0 5 916 215 31 31 0 chr3 43410161 43410193 -116189590 + (TG)n Simple_repeat Simple_repeat 1 33 0 5 916 1818 128 6 56 chr3 43410403 43410742 -116189041 - RLTRETN_Mm LTR ERVK 0 322 1 5 916 9941 108 4 6 chr3 43410761 43412918 -116186865 - L1Md_F2 LINE L1 0 6582 4432 5 916 6903 50 6 0 chr3 43412927 43413794 -116185989 - L1Md_T LINE L1 0 6582 5711 5 916 19752 112 42 10 chr3 43413791 43417657 -116182126 - L1Md_F2 LINE L1 -1453 4430 437 5 916 27 0 0 0 chr3 43417792 43417819 -116181964 + AT_rich Low_complexity Low_complexity 1 27 0 5 916 664 131 100 0 chr3 43417914 43418044 -116181739 + L1_Mus3 LINE L1 6495 6637 -1 5 916 2865 239 24 69 chr3 43418063 43418233 -116181550 - L1_Mur2 LINE L1 -1109 4768 4631 5 916 1003 103 0 20 chr3 43418233 43418245 -116181538 - B1_Mus1 SINE Alu 0 148 139 5 916 189 74 0 0 chr3 43418245 43418272 -116181511 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 5 916 1003 103 0 20 chr3 43418272 43418408 -116181375 - B1_Mus1 SINE Alu -10 138 3 5 916 2865 239 24 69 chr3 43418408 43419236 -116180547 - L1_Mur2 LINE L1 -1247 4630 3815 5 916 189 0 0 0 chr3 43419239 43419260 -116180523 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 5 916 1518 257 31 90 chr3 43419260 43419914 -116179869 + Lx6 LINE L1 4862 5476 -404 5 916 15684 109 11 2 chr3 43419913 43422937 -116176846 + L1_Mus1 LINE L1 3515 6564 -3 5 916 1542 200 6 3 chr3 43423015 43423331 -116176452 + Lx3C LINE L1 5682 5998 -978 5 916 1865 249 68 8 chr3 43423337 43423807 -116175976 + Lx2B LINE L1 6503 7000 0 5 916 1364 332 70 83 chr3 43423816 43424912 -116174871 + Lx6 LINE L1 5737 7162 -298 5 916 369 0 0 0 chr3 43424912 43424953 -116174830 + (TG)n Simple_repeat Simple_repeat 1 41 0 5 916 1364 300 68 18 chr3 43424953 43425196 -116174587 + Lx6 LINE L1 7163 7425 -35 5 916 577 25 25 0 chr3 43425199 43425278 -116174505 + (TAGA)n Simple_repeat Simple_repeat 4 84 0 5 916 907 343 38 16 chr3 43427314 43427741 -116172042 + RMER5 LTR ERV1 81 516 -18 5 916 207 0 0 0 chr3 43428074 43428097 -116171686 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 5 916 234 40 19 74 chr3 43428343 43428397 -116171386 + (TTTTTG)n Simple_repeat Simple_repeat 1 51 0 5 916 614 95 11 0 chr3 43428968 43429063 -116170720 + (TAA)n Simple_repeat Simple_repeat 1 96 0 5 916 498 305 26 7 chr3 43429064 43429219 -116170564 + Lx9 LINE L1 6535 6692 -952 5 916 360 0 0 0 chr3 43430014 43430054 -116169729 + (TA)n Simple_repeat Simple_repeat 2 41 0 5 916 210 250 0 0 chr3 43430476 43430536 -116169247 + T-rich Low_complexity Low_complexity 1 60 0 5 916 222 116 0 0 chr3 43430709 43430752 -116169031 + (T)n Simple_repeat Simple_repeat 1 43 0 5 916 28 29 0 0 chr3 43431571 43431606 -116168177 + AT_rich Low_complexity Low_complexity 1 35 0 5 916 271 374 12 9 chr3 43431817 43431959 -116167824 + B1F1 SINE Alu 5 144 -5 5 916 5891 143 48 13 chr3 43432359 43433421 -116166362 + Lx3B LINE L1 5871 6969 -4 5 916 28 0 0 0 chr3 43433421 43433449 -116166334 + AT_rich Low_complexity Low_complexity 1 28 0 5 916 291 215 0 0 chr3 43433457 43433522 -116166261 + (TG)n Simple_repeat Simple_repeat 1 65 0 5 916 236 304 0 177 chr3 43433522 43433618 -116166165 - RSINE1 SINE B4 0 165 87 6 916 234 0 0 0 chr3 43434151 43434177 -116165606 + (TTTTA)n Simple_repeat Simple_repeat 4 29 0 6 916 1022 171 18 9 chr3 43434183 43434401 -116165382 - Lx2 LINE L1 -2 6995 6776 6 916 1197 148 0 0 chr3 43434402 43434585 -116165198 - Lx2 LINE L1 -354 6643 6461 6 916 23 54 0 0 chr3 43435778 43435815 -116163968 + AT_rich Low_complexity Low_complexity 1 37 0 6 916 514 63 25 0 chr3 43435914 43435993 -116163790 + (TA)n Simple_repeat Simple_repeat 2 82 0 6 916 2405 178 169 12 chr3 43436268 43436864 -116162919 + RMER6C LTR ERVK 1 690 0 6 916 624 87 0 0 chr3 43437000 43437092 -116162691 + (CA)n Simple_repeat Simple_repeat 2 93 0 6 916 22 35 0 0 chr3 43437992 43438021 -116161762 + AT_rich Low_complexity Low_complexity 1 29 0 6 916 4055 83 0 50 chr3 43438431 43439035 -116160748 - L1Md_F2 LINE L1 0 6582 6033 6 916 5408 111 28 30 chr3 43439035 43439930 -116159853 - RLTR13B1 LTR ERVK 0 893 1 6 916 4055 83 0 50 chr3 43439930 43439968 -116159815 - L1Md_F2 LINE L1 -550 6032 5995 6 916 1419 45 17 0 chr3 43439968 43440146 -116159637 - L1Md_F3 LINE L1 -245 6339 6159 6 916 1773 83 28 0 chr3 43440138 43440391 -116159392 + L1Md_F3 LINE L1 6311 6570 -14 6 916 4883 65 7 2 chr3 43440390 43441162 -116158621 - L1Md_F2 LINE L1 -578 6004 5229 6 916 12364 92 1 1 chr3 43441157 43442888 -116156895 + L1Md_F2 LINE L1 3489 5218 -665 6 916 1052 162 0 6 chr3 43443556 43443736 -116156047 - B2_Mm2 SINE B2 -16 179 1 6 916 351 0 0 0 chr3 43443809 43443848 -116155935 + (TC)n Simple_repeat Simple_repeat 2 40 0 6 916 21 57 0 0 chr3 43444033 43444068 -116155715 + AT_rich Low_complexity Low_complexity 1 35 0 6 916 248 234 13 0 chr3 43444164 43444241 -116155542 - Lx9 LINE L1 -156 7488 7411 6 916 603 313 50 36 chr3 43444245 43444547 -116155236 + Lx9 LINE L1 7100 7405 -239 6 916 21 0 0 0 chr3 43444892 43444913 -116154870 + AT_rich Low_complexity Low_complexity 1 21 0 6 916 379 224 60 0 chr3 43445809 43445925 -116153858 + L1MB1 LINE L1 6045 6167 -1 6 916 1128 284 16 7 chr3 43446851 43447156 -116152627 + ORR1B2 LTR MaLR 1 308 -59 6 916 381 284 0 9 chr3 43447216 43447326 -116152457 - B1_Mus2 SINE Alu 0 147 39 6 916 7810 193 21 13 chr3 43447335 43448915 -116150868 + L1_Mur1 LINE L1 2393 3980 -1906 6 916 3484 71 4 2 chr3 43448915 43449368 -116150415 + L1_Mus2 LINE L1 6113 6566 0 6 916 7810 193 21 13 chr3 43449368 43449530 -116150253 + L1_Mur1 LINE L1 3981 4149 -1737 6 916 216 86 0 0 chr3 43449798 43449833 -116149950 + (TTAAA)n Simple_repeat Simple_repeat 1 35 0 6 916 248 346 93 23 chr3 43449842 43450058 -116149725 + Lx8 LINE L1 7100 7330 -143 6 916 33 25 0 0 chr3 43450194 43450234 -116149549 + AT_rich Low_complexity Low_complexity 1 40 0 6 916 597 198 47 0 chr3 43451022 43451179 -116148604 + ORR1D1 LTR MaLR 6 180 -204 6 916 764 115 8 0 chr3 43451180 43451302 -116148481 + (TCTA)n Simple_repeat Simple_repeat 4 126 0 6 916 457 271 8 0 chr3 43451333 43451462 -116148321 + ORR1D1 LTR MaLR 255 384 0 6 916 21 36 0 0 chr3 43452278 43452306 -116147477 + AT_rich Low_complexity Low_complexity 1 28 0 6 916 550 285 80 11 chr3 43452681 43452869 -116146914 - Lx9 LINE L1 -312 7332 7132 6 916 22 56 0 0 chr3 43453109 43453145 -116146638 + AT_rich Low_complexity Low_complexity 1 36 0 6 916 446 252 112 6 chr3 43454538 43454698 -116145085 - Lx2B LINE L1 -5 6995 6819 6 916 189 0 0 0 chr3 43454702 43454723 -116145060 + (TTG)n Simple_repeat Simple_repeat 1 21 0 6 916 210 37 0 0 chr3 43454727 43454754 -116145029 + (TTTTTA)n Simple_repeat Simple_repeat 2 28 0 6 916 3405 55 7 2 chr3 43454760 43455194 -116144589 - L1Md_F3 LINE L1 -12 6572 6137 6 916 22 0 0 0 chr3 43455315 43455337 -116144446 + AT_rich Low_complexity Low_complexity 1 22 0 6 916 22 80 0 0 chr3 43456401 43456451 -116143332 + AT_rich Low_complexity Low_complexity 1 50 0 6 916 22 0 0 0 chr3 43456911 43456933 -116142850 + AT_rich Low_complexity Low_complexity 1 22 0 6 916 24 0 0 0 chr3 43457142 43457166 -116142617 + AT_rich Low_complexity Low_complexity 1 24 0 6 916 3001 41 0 3 chr3 43457913 43458283 -116141500 + L1Md_T LINE L1 6214 6582 0 6 916 771 112 0 0 chr3 43459477 43459593 -116140190 + (TTTC)n Simple_repeat Simple_repeat 2 117 0 6 916 870 118 63 0 chr3 43459593 43459720 -116140063 - B1_Mm SINE Alu -10 137 3 6 916 8225 125 17 17 chr3 43459724 43461744 -116138039 + L1VL1 LINE L1 409 2430 -1268 6 916 9421 9 0 0 chr3 43461744 43462781 -116137002 + MERVL-int LTR ERVL 2568 3604 -1881 6 916 3038 41 0 0 chr3 43462786 43463202 -116136581 - MERVL-int LTR ERVL -3865 1896 1340 6 916 5336 147 33 8 chr3 43463202 43463650 -116136133 + L1_Mm LINE L1 2661 3134 -2749 6 916 306 0 0 0 chr3 43463650 43463684 -116136099 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 6 916 5336 147 33 8 chr3 43463684 43464216 -116135567 + L1_Mm LINE L1 3135 3664 -2219 6 916 5292 106 15 9 chr3 43464225 43465025 -116134758 + L1_Mus3 LINE L1 5834 6638 0 6 916 22 70 0 0 chr3 43465680 43465723 -116134060 + AT_rich Low_complexity Low_complexity 1 43 0 6 916 21 0 0 0 chr3 43466601 43466622 -116133161 + AT_rich Low_complexity Low_complexity 1 21 0 6 916 29 0 0 0 chr3 43466667 43466696 -116133087 + AT_rich Low_complexity Low_complexity 1 29 0 6 916 504 0 0 0 chr3 43467593 43467649 -116132134 + (TC)n Simple_repeat Simple_repeat 1 56 0 6 916 708 45 0 0 chr3 43467649 43467736 -116132047 + (CA)n Simple_repeat Simple_repeat 1 88 0 6 916 368 223 70 62 chr3 43467907 43468036 -116131747 + B1F1 SINE Alu 16 145 -4 6 916 245 289 72 72 chr3 43467914 43468052 -116131731 + B4A SINE B4 106 243 -49 6 916 215 119 24 0 chr3 43468185 43468207 -116131576 + (TA)n Simple_repeat Simple_repeat 1 23 0 6 916 243 0 0 0 chr3 43468207 43468234 -116131549 + (TG)n Simple_repeat Simple_repeat 2 28 0 6 916 215 119 24 0 chr3 43468234 43468253 -116131530 + (TA)n Simple_repeat Simple_repeat 2 20 0 6 916 522 83 0 0 chr3 43469501 43469573 -116130210 + (CA)n Simple_repeat Simple_repeat 2 73 0 6 916 800 248 4 76 chr3 43469842 43470078 -116129705 + RLTR20B3 LTR ERVK 242 460 -117 6 916 339 25 0 0 chr3 43470079 43470119 -116129664 + (CA)n Simple_repeat Simple_repeat 2 41 0 6 916 509 30 0 15 chr3 43470127 43470195 -116129588 + (TAGA)n Simple_repeat Simple_repeat 4 70 0 6 916 6696 60 2 14 chr3 43470201 43471069 -116128714 - L1Md_F2 LINE L1 -12 6570 5713 6 916 569 255 35 14 chr3 43471092 43471235 -116128548 + B1_Mur3 SINE Alu 3 148 -1 6 916 505 322 16 42 chr3 43471917 43472102 -116127681 - B3A SINE B2 -5 211 26 6 916 248 331 71 75 chr3 43472677 43472972 -116126811 + MTEa LTR MaLR 24 337 -42 6 916 35 41 0 0 chr3 43473359 43473408 -116126375 + AT_rich Low_complexity Low_complexity 1 49 0 6 916 347 165 0 25 chr3 43473781 43473862 -116125921 + CT-rich Low_complexity Low_complexity 1 79 0 6 916 925 142 6 6 chr3 43474001 43474171 -116125612 - Lx LINE L1 0 6654 6485 6 916 495 112 31 0 chr3 43474329 43474427 -116125356 + (TA)n Simple_repeat Simple_repeat 2 102 0 6 916 476 354 48 21 chr3 43474527 43474859 -116124924 - Lx8 LINE L1 -13 7460 7120 6 916 21 0 0 0 chr3 43475967 43475988 -116123795 + AT_rich Low_complexity Low_complexity 1 21 0 6 916 252 366 44 73 chr3 43476085 43476297 -116123486 - B3A SINE B2 0 216 3 6 916 329 189 99 11 chr3 43476347 43476438 -116123345 - ORR1C1-int LTR MaLR -1269 101 3 6 916 1307 219 63 60 chr3 43476438 43476801 -116122982 - ORR1C1 LTR MaLR -13 365 2 6 916 330 168 9 17 chr3 43477436 43477551 -116122232 + GA-rich Low_complexity Low_complexity 2 115 0 6 916 22 70 0 0 chr3 43478302 43478345 -116121438 + AT_rich Low_complexity Low_complexity 1 43 0 6 916 1218 318 49 28 chr3 43479623 43479885 -116119898 - Lx6 LINE L1 0 7460 7188 6 916 3911 103 7 20 chr3 43479885 43480477 -116119306 + L1_Mus3 LINE L1 6047 6630 -8 6 916 492 18 0 0 chr3 43480479 43480536 -116119247 + (TA)n Simple_repeat Simple_repeat 1 57 0 6 916 1218 318 49 28 chr3 43480536 43480800 -116118983 - Lx6 LINE L1 -273 7187 6920 6 916 709 336 36 36 chr3 43480894 43481227 -116118556 - Lx6 LINE L1 -742 6718 6386 6 916 6480 146 17 5 chr3 43481235 43482591 -116117192 - Lx LINE L1 -2 6652 5278 6 916 1087 335 58 42 chr3 43482595 43483185 -116116598 - Lx6 LINE L1 -1072 6388 5790 6 916 1581 195 26 3 chr3 43483213 43483558 -116116225 + L1_Mur1 LINE L1 5137 5489 -397 6 916 2946 82 10 0 chr3 43483558 43483950 -116115833 + MTA_Mm LTR MaLR 1 396 0 6 916 2593 108 8 5 chr3 43483950 43484350 -116115433 + MTA_Mm-int LTR MaLR 1 401 -697 6 916 30397 133 9 16 chr3 43484350 43485836 -116113947 + L1Md_F2 LINE L1 495 1980 -3903 6 916 248 70 0 23 chr3 43485836 43485880 -116113903 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 6 916 30397 91 6 1 chr3 43485880 43489478 -116110305 + L1Md_F2 LINE L1 1981 5586 -297 6 916 7625 72 0 1 chr3 43489478 43490472 -116109311 + L1Md_F2 LINE L1 5587 6579 -3 6 916 644 265 43 63 chr3 43490840 43491094 -116108689 - RLTR5_Mm LTR ERV1 0 628 380 6 916 23 33 0 0 chr3 43491308 43491338 -116108445 + AT_rich Low_complexity Low_complexity 1 30 0 6 916 4893 80 31 3 chr3 43491753 43492455 -116107328 + MTA_Mm-int LTR MaLR 377 1098 0 6 916 864 37 0 0 chr3 43492455 43492562 -116107221 + MTA_Mm LTR MaLR 1 107 -289 6 916 329 104 0 0 chr3 43492566 43492614 -116107169 - L1_Mus2 LINE L1 -315 6251 6204 6 916 3661 124 59 2 chr3 43492612 43493327 -116106456 - MusHAL1 LINE L1 -2010 1343 590 6 916 7172 92 12 3 chr3 43493324 43494523 -116105260 - L1Md_F2 LINE L1 0 6582 5376 6 916 6965 93 1 1 chr3 43494521 43495503 -116104280 + L1Md_F2 LINE L1 4382 5363 -520 6 916 2417 232 22 43 chr3 43495502 43495564 -116104219 - L1VL4 LINE L1 -5493 809 748 6 916 540 0 0 0 chr3 43495564 43495624 -116104159 + (TA)n Simple_repeat Simple_repeat 2 61 0 6 916 2417 232 22 43 chr3 43495624 43496188 -116103595 - L1VL4 LINE L1 -5555 747 198 6 916 906 289 115 23 chr3 43496199 43496546 -116103237 - MTD LTR MaLR -14 405 27 6 916 26 74 0 0 chr3 43497101 43497155 -116102628 + AT_rich Low_complexity Low_complexity 1 54 0 6 916 1836 141 0 7 chr3 43497481 43497789 -116101994 - L1_Mm LINE L1 -1144 4739 4434 6 916 12598 131 6 5 chr3 43497781 43499854 -116099929 + L1_Mm LINE L1 2353 4427 -1456 6 916 893 76 407 0 chr3 43499828 43500000 -116099783 + L1_Mus2 LINE L1 5808 6049 -517 6 916 3546 143 14 2 chr3 43500000 43500575 -116099208 + L1_Mus3 LINE L1 6050 6631 -7 1 916 879 321 138 41 chr3 43500817 43501939 -116097844 - L1M4b LINE L1 -753 6253 5023 2 916 340 284 164 30 chr3 43501941 43502308 -116097475 - L1M4b LINE L1 -4225 3109 2694 2 916 614 257 0 0 chr3 43503120 43503264 -116096519 - B1_Mur4 SINE Alu -6 144 1 3 916 2566 201 21 6 chr3 43503272 43503788 -116095995 - Lx2B LINE L1 -3 6997 6474 4 916 31 0 0 0 chr3 43503788 43503819 -116095964 + AT_rich Low_complexity Low_complexity 1 31 0 5 916 4051 186 13 24 chr3 43505505 43506291 -116093492 + Lx2 LINE L1 5895 6671 -326 6 916 958 53 0 0 chr3 43506291 43506423 -116093360 + L1Md_T LINE L1 6451 6582 0 7 916 369 0 0 0 chr3 43506448 43506489 -116093294 + (GAAA)n Simple_repeat Simple_repeat 3 43 0 8 916 1648 162 27 27 chr3 43506490 43506820 -116092963 + Lx2 LINE L1 6668 6997 0 6 916 21 0 0 0 chr3 43507232 43507253 -116092530 + AT_rich Low_complexity Low_complexity 1 21 0 9 916 791 201 165 14 chr3 43507477 43507689 -116092094 + L1_Mur3 LINE L1 5329 5572 -308 1 916 1938 116 0 0 chr3 43507982 43508285 -116091498 - L1_Mm LINE L1 -4068 1815 1513 1 916 507 33 0 0 chr3 43508287 43508348 -116091435 + (TA)n Simple_repeat Simple_repeat 1 61 0 1 916 376 154 0 0 chr3 43508530 43508595 -116091188 - L1_Mur2 LINE L1 -1452 4425 4361 1 916 276 73 0 0 chr3 43508592 43508633 -116091150 - L1Md_F LINE L1 -3040 2843 2803 1 916 320 186 43 0 chr3 43508637 43508707 -116091076 - L1_Mm LINE L1 -3459 2424 2352 1 916 7596 173 51 77 chr3 43508689 43511055 -116088728 - L1Md_F LINE L1 -3308 2575 273 1 916 472 326 77 7 chr3 43511228 43511500 -116088283 - Lx9 LINE L1 -206 7438 7148 1 916 396 59 0 0 chr3 43511524 43511575 -116088208 + (GAAA)n Simple_repeat Simple_repeat 2 52 0 1 916 257 0 30 0 chr3 43512325 43512358 -116087425 + (TAAA)n Simple_repeat Simple_repeat 1 34 0 1 916 812 32 56 0 chr3 43513039 43513164 -116086619 + (TAGA)n Simple_repeat Simple_repeat 4 135 0 1 916 988 300 96 20 chr3 43513759 43514113 -116085670 + MTC LTR MaLR 41 421 0 2 916 756 349 38 19 chr3 43515043 43515361 -116084422 - MTE2a LTR MaLR 0 379 56 2 916 3485 18 2 0 chr3 43515393 43515788 -116083995 + MTA_Mm LTR MaLR 1 396 0 2 917 35 54 0 0 chr3 43515964 43516020 -116083763 + AT_rich Low_complexity Low_complexity 1 56 0 2 917 258 246 0 14 chr3 43516964 43517038 -116082745 - L1_Rod LINE L1 -1151 4696 4624 2 917 1034 171 47 10 chr3 43517050 43517121 -116082662 + L1_Mus4 LINE L1 6203 6258 -378 2 917 1150 154 28 5 chr3 43517121 43517336 -116082447 - Lx LINE L1 -1 6653 6434 2 917 1126 142 0 6 chr3 43517336 43517513 -116082270 + Lx LINE L1 6260 6435 -219 2 917 1099 283 55 39 chr3 43517532 43517969 -116081814 + Lx9 LINE L1 6993 7436 -208 2 917 345 82 0 0 chr3 43518005 43518054 -116081729 + (TG)n Simple_repeat Simple_repeat 1 49 0 2 917 25 0 0 0 chr3 43518137 43518162 -116081621 + AT_rich Low_complexity Low_complexity 1 25 0 2 917 2539 170 29 0 chr3 43518341 43518783 -116081000 + Lx2 LINE L1 6543 6997 0 3 917 465 19 0 0 chr3 43518969 43519023 -116080760 + (TG)n Simple_repeat Simple_repeat 1 54 0 3 917 453 307 66 12 chr3 43519204 43519448 -116080335 - L1MA9 LINE L1 -435 5877 5621 3 917 239 324 74 69 chr3 43520062 43520251 -116079532 - L1MC3 LINE L1 -997 6788 6599 3 917 1191 123 0 0 chr3 43520419 43520598 -116079185 + L1_Mm LINE L1 4893 5071 -812 3 917 6075 59 10 4 chr3 43520689 43521468 -116078315 - L1Md_F2 LINE L1 0 6582 5799 3 917 3039 83 2 0 chr3 43521468 43521916 -116077867 + L1_Mm LINE L1 1273 1721 -4162 3 917 359 240 10 0 chr3 43521971 43522075 -116077708 + (TA)n Simple_repeat Simple_repeat 1 105 0 3 917 22 0 0 0 chr3 43522791 43522813 -116076970 + AT_rich Low_complexity Low_complexity 1 22 0 3 917 699 159 20 0 chr3 43524525 43524676 -116075107 + GA-rich Low_complexity Low_complexity 2 155 0 3 917 183 80 0 0 chr3 43524683 43524708 -116075075 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 4 917 3233 225 31 171 chr3 43524710 43525214 -116074569 - RMER1A Other Other -13 1017 603 4 917 5583 71 30 0 chr3 43525214 43525957 -116073826 + L1_Mus1 LINE L1 5799 6563 -4 4 917 3233 252 81 114 chr3 43525957 43527052 -116072731 - RMER1A Other Other -428 602 8 4 917 618 220 75 45 chr3 43527053 43527253 -116072530 - RLTR12A LTR ERVK 0 568 363 4 917 244 158 35 0 chr3 43527348 43527405 -116072378 + CT-rich Low_complexity Low_complexity 1 59 0 4 917 295 232 14 0 chr3 43527471 43527540 -116072243 - Lx9 LINE L1 -624 7020 6951 4 917 415 197 13 0 chr3 43527536 43527612 -116072171 + Lx9 LINE L1 6517 6593 -1051 4 917 645 320 35 27 chr3 43527646 43527903 -116071880 + Lx9 LINE L1 6677 6935 -709 4 917 3903 136 38 0 chr3 43528118 43528722 -116071061 - Lx3B LINE L1 -127 6846 6220 4 917 428 131 0 0 chr3 43528720 43528781 -116071002 + L1_Mur1 LINE L1 5471 5531 -355 4 917 212 0 0 35 chr3 43530157 43530186 -116069597 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 4 917 249 98 0 0 chr3 43530538 43530579 -116069204 + (TTG)n Simple_repeat Simple_repeat 2 42 0 5 917 376 339 16 0 chr3 43530584 43530705 -116069078 - B1F SINE Alu 0 149 27 5 917 1314 182 67 13 chr3 43530719 43531031 -116068752 + ORR1A4 LTR MaLR 1 329 0 5 917 255 234 0 15 chr3 43531250 43531315 -116068468 + CT-rich Low_complexity Low_complexity 4 67 0 5 917 311 91 0 0 chr3 43532110 43532154 -116067629 - L1_Mur3 LINE L1 -1253 4627 4584 5 917 3688 273 69 31 chr3 43532163 43533088 -116066695 + Lx7 LINE L1 6389 7360 -336 5 917 210 37 0 0 chr3 43533088 43533115 -116066668 + (TTG)n Simple_repeat Simple_repeat 2 28 0 5 917 3688 273 69 31 chr3 43533115 43533446 -116066337 + Lx7 LINE L1 7361 7693 -3 5 917 1800 221 52 54 chr3 43533713 43534045 -116065738 + RMER6C LTR ERVK 1 344 -346 5 917 615 27 0 0 chr3 43534045 43534118 -116065665 + (GA)n Simple_repeat Simple_repeat 1 73 0 5 917 1800 221 52 54 chr3 43534118 43534287 -116065496 + RMER6C LTR ERVK 345 500 -190 5 917 8991 203 50 120 chr3 43534290 43536053 -116063730 + L1_Mur2 LINE L1 1205 2977 -2900 5 917 1325 169 91 0 chr3 43536053 43536295 -116063488 + ORR1A4 LTR MaLR 65 328 -1 6 917 8991 203 50 120 chr3 43536295 43537472 -116062311 + L1_Mur2 LINE L1 2978 4163 -1714 5 917 478 141 0 0 chr3 43537478 43537563 -116062220 + L1_Mur2 LINE L1 5203 5287 -590 5 917 2343 249 134 19 chr3 43537561 43538446 -116061337 + Lx4B LINE L1 5940 6945 -55 6 917 2258 68 13 16 chr3 43538446 43538760 -116061023 + L1Md_F2 LINE L1 6256 6568 -14 6 917 1951 262 162 28 chr3 43538760 43538796 -116060987 + Lx4B LINE L1 6946 7000 0 6 917 21 0 0 0 chr3 43538868 43538889 -116060894 + AT_rich Low_complexity Low_complexity 1 21 0 6 917 203 285 8 31 chr3 43538939 43539066 -116060717 + A-rich Low_complexity Low_complexity 2 125 0 6 917 1510 232 12 16 chr3 43539262 43539581 -116060202 + RLTR12B LTR ERVK 5 322 -206 6 917 21 0 0 0 chr3 43539795 43539816 -116059967 + AT_rich Low_complexity Low_complexity 1 21 0 6 917 226 191 21 0 chr3 43539999 43540046 -116059737 + (TA)n Simple_repeat Simple_repeat 1 48 0 6 917 5834 78 45 4 chr3 43540046 43540853 -116058930 - L1Md_F2 LINE L1 -2 6580 5741 6 917 388 361 14 14 chr3 43540899 43541045 -116058738 + RSINE1 SINE B4 3 148 -17 6 917 329 359 87 16 chr3 43541540 43541724 -116058059 - B3 SINE B2 0 216 20 7 917 2107 226 53 67 chr3 43541781 43542265 -116057518 - RMER6C LTR ERVK -2 688 230 7 917 361 0 20 20 chr3 43542265 43542315 -116057468 + (TTTTG)n Simple_repeat Simple_repeat 2 51 0 7 917 2107 226 53 67 chr3 43542315 43542507 -116057276 - RMER6C LTR ERVK -461 229 22 7 917 21 36 0 0 chr3 43542553 43542581 -116057202 + AT_rich Low_complexity Low_complexity 1 28 0 7 917 232 208 38 25 chr3 43542692 43542771 -116057012 - MLT2B5 LTR ERVL -4 551 472 7 917 426 288 44 10 chr3 43542844 43543013 -116056770 - MT2A LTR ERVL -30 571 347 7 917 374 305 30 30 chr3 43543057 43543194 -116056589 - MT2A LTR ERVL -164 329 100 7 917 1451 201 89 9 chr3 43543208 43543535 -116056248 - ORR1B1 LTR MaLR 0 394 42 7 917 517 196 9 36 chr3 43543554 43543665 -116056118 - MT2A LTR ERVL -423 110 3 7 917 309 68 0 0 chr3 43543668 43543712 -116056071 + (TA)n Simple_repeat Simple_repeat 2 45 0 7 917 355 322 88 57 chr3 43545827 43546021 -116053762 - B3 SINE B2 0 216 17 7 917 1606 295 29 13 chr3 43546089 43546643 -116053140 + Lx6 LINE L1 5709 6331 -727 7 917 1388 214 4 4 chr3 43546647 43546909 -116052874 - ORR1A4 LTR MaLR -8 321 60 8 917 1902 172 64 68 chr3 43546897 43547352 -116052431 - ORR1A4-int LTR MaLR -7 1502 1050 8 917 255 273 58 43 chr3 43547354 43547423 -116052360 - ORR1A4 LTR MaLR -146 183 114 8 917 3937 96 11 7 chr3 43547429 43547985 -116051798 - L1Md_F2 LINE L1 -21 6561 6004 8 917 512 175 84 29 chr3 43547985 43548164 -116051619 - ORR1A4 LTR MaLR -158 236 2 8 917 680 317 32 0 chr3 43548164 43548422 -116051361 + Lx6 LINE L1 6522 6811 -885 7 917 22 0 0 0 chr3 43548501 43548523 -116051260 + AT_rich Low_complexity Low_complexity 1 22 0 8 917 1602 187 7 3 chr3 43552455 43552761 -116047022 - ORR1A3-int LTR MaLR -1656 307 1 8 917 1051 227 115 25 chr3 43552769 43552979 -116046804 + ORR1A4 LTR MaLR 1 204 -190 8 917 3766 48 0 0 chr3 43552979 43553442 -116046341 - L1Md_F2 LINE L1 -4 6578 6116 8 917 1051 225 124 17 chr3 43553442 43553597 -116046186 + ORR1A4 LTR MaLR 142 321 -8 8 917 816 340 99 27 chr3 43554001 43554548 -116045235 + Lx8 LINE L1 6842 7427 -46 8 917 522 0 0 0 chr3 43555224 43555282 -116044501 + (TAA)n Simple_repeat Simple_repeat 3 60 0 8 917 440 213 32 24 chr3 43555548 43555673 -116044110 - Lx9 LINE L1 -7 7637 7512 9 917 1261 190 0 4 chr3 43556357 43556606 -116043177 - L1_Mur2 LINE L1 -1784 4093 3846 9 917 2570 191 16 14 chr3 43556608 43557161 -116042622 + L1_Mur2 LINE L1 4615 5168 -709 9 917 480 149 0 0 chr3 43557315 43557409 -116042374 + (TG)n Simple_repeat Simple_repeat 1 94 0 9 917 1459 88 5 0 chr3 43557600 43557794 -116041989 + MTB LTR MaLR 3 197 -203 9 917 2361 114 124 14 chr3 43557804 43558232 -116041551 + IAPLTR2_Mm LTR ERVK 1 475 0 9 917 441 53 0 0 chr3 43558232 43558289 -116041494 + URR1B DNA MER1_type 168 224 -1 9 917 2945 76 31 21 chr3 43558345 43558764 -116041019 + L1_Mus2 LINE L1 6144 6566 0 9 917 946 134 25 25 chr3 43558783 43558912 -116040871 + MTB LTR MaLR 182 310 -90 9 917 533 278 74 55 chr3 43558912 43558992 -116040791 - RLTR31_Mm LTR ERVK 0 692 611 9 917 2835 76 63 0 chr3 43558992 43559388 -116040395 + BGLII LTR ERVK 1 421 0 9 917 1936 216 66 40 chr3 43559388 43559805 -116039978 - RLTR31_Mm LTR ERVK -82 610 98 9 917 541 0 29 0 chr3 43559805 43559874 -116039909 + (TC)n Simple_repeat Simple_repeat 2 72 0 1 917 1936 214 66 40 chr3 43559874 43559969 -116039814 - RLTR31_Mm LTR ERVK -464 97 3 9 917 625 116 11 0 chr3 43559972 43560067 -116039716 + MTB_Mm LTR MaLR 312 407 0 1 917 1232 129 5 5 chr3 43560086 43560296 -116039487 + Lx LINE L1 6445 6654 0 1 917 714 333 45 4 chr3 43561607 43561875 -116037908 + Lx5 LINE L1 6754 7032 -18 1 917 2250 156 124 7 chr3 43561915 43562349 -116037434 - L1_Mm LINE L1 -42 5841 5357 1 917 4083 65 0 0 chr3 43562627 43563146 -116036637 + L1Md_F3 LINE L1 5067 5585 -298 1 917 7978 47 1 5 chr3 43563147 43564135 -116035648 + L1Md_F3 LINE L1 5587 6570 -14 1 917 3079 76 0 0 chr3 43564219 43564626 -116035157 - L1_Mus2 LINE L1 0 6566 6160 1 917 1015 215 19 19 chr3 43564627 43564892 -116034891 - L1_Mur2 LINE L1 -530 5347 5083 1 917 7011 114 19 1 chr3 43564900 43565982 -116033801 - L1_Mus4 LINE L1 -6 6630 5530 1 917 647 213 0 0 chr3 43566000 43566150 -116033633 - L1_Mur2 LINE L1 -784 5102 4953 1 917 3179 142 28 4 chr3 43566151 43566687 -116033096 + Lx2 LINE L1 6448 6996 -1 1 917 24 0 0 0 chr3 43567405 43567429 -116032354 + AT_rich Low_complexity Low_complexity 1 24 0 1 917 2646 175 18 10 chr3 43568694 43569197 -116030586 - Lx3C LINE L1 -762 6214 5708 1 917 1609 137 4 4 chr3 43569195 43569452 -116030331 + L1_Mur1 LINE L1 4971 5227 -659 1 917 414 0 0 0 chr3 43569453 43569499 -116030284 + (TA)n Simple_repeat Simple_repeat 2 47 0 1 917 1513 184 14 0 chr3 43569499 43569782 -116030001 + L1_Mur1 LINE L1 5423 5709 -177 1 917 959 129 0 13 chr3 43570214 43570363 -116029420 + B1_Mus1 SINE Alu 2 148 0 1 917 214 200 0 0 chr3 43570363 43570403 -116029380 + A-rich Low_complexity Low_complexity 1 40 0 1 917 307 278 34 28 chr3 43571483 43571661 -116028122 + (TCTA)n Simple_repeat Simple_repeat 1 179 0 1 917 587 160 18 12 chr3 43571674 43571845 -116027938 + (TCTA)n Simple_repeat Simple_repeat 3 174 0 1 917 822 21 0 0 chr3 43572275 43572371 -116027412 + (GAAA)n Simple_repeat Simple_repeat 3 98 0 1 917 26 50 0 0 chr3 43572526 43572566 -116027217 + AT_rich Low_complexity Low_complexity 1 40 0 1 917 472 30 30 0 chr3 43572621 43572687 -116027096 + (TTTTG)n Simple_repeat Simple_repeat 1 68 0 1 917 338 42 0 20 chr3 43572738 43572787 -116026996 + (TTA)n Simple_repeat Simple_repeat 1 48 0 1 917 3577 173 21 6 chr3 43572793 43573444 -116026339 - Lx3B LINE L1 -7 6966 6306 1 917 423 272 62 23 chr3 43573460 43573588 -116026195 - Lx5 LINE L1 -260 6790 6658 1 917 481 178 71 45 chr3 43573583 43573595 -116026188 - L1_Mur2 LINE L1 -2340 3537 3528 1 917 468 0 0 0 chr3 43573595 43573647 -116026136 + (TA)n Simple_repeat Simple_repeat 2 53 0 1 917 1485 117 22 4 chr3 43573647 43573878 -116025905 - L1_Mus1 LINE L1 -10 6557 6323 1 917 481 178 71 45 chr3 43573878 43573976 -116025807 - L1_Mur2 LINE L1 -2350 3527 3424 1 917 1522 253 48 10 chr3 43574067 43574463 -116025320 + RMER19A LTR ERVK 327 737 0 1 917 6211 209 37 15 chr3 43574465 43576091 -116023692 - L1_Mur2 LINE L1 -3135 2742 1084 1 917 204 170 0 0 chr3 43576091 43576144 -116023639 + T-rich Low_complexity Low_complexity 1 53 0 1 917 6581 58 17 0 chr3 43576205 43577048 -116022735 - L1Md_F2 LINE L1 -1 6581 5725 1 917 572 259 44 14 chr3 43577028 43577205 -116022578 - L1_Mur2 LINE L1 -5515 1123 941 1 917 242 164 127 0 chr3 43577865 43577920 -116021863 - Lx LINE L1 -21 6633 6572 1 917 1685 192 79 77 chr3 43578102 43578531 -116021252 - RLTR23 LTR ERV1 0 430 1 1 917 1493 228 25 87 chr3 43578822 43579225 -116020558 + RLTR1B LTR ERV1 135 512 0 1 917 847 322 46 31 chr3 43579357 43579774 -116020009 + Lx6 LINE L1 62 484 -7244 1 917 225 136 15 29 chr3 43579807 43579875 -116019908 + (CAAA)n Simple_repeat Simple_repeat 4 70 0 1 917 315 0 0 0 chr3 43579943 43579978 -116019805 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1 917 1175 231 39 6 chr3 43579980 43580398 -116019385 + Lx6 LINE L1 926 1362 -4518 1 917 423 187 66 0 chr3 43580405 43580496 -116019287 + Lx6 LINE L1 4515 4611 -1269 1 917 7555 177 19 12 chr3 43580516 43582227 -116017556 - Lx3C LINE L1 -9 6967 5252 1 917 4638 225 45 27 chr3 43582206 43583406 -116016377 + Lx6 LINE L1 4601 5830 -50 1 917 468 0 0 0 chr3 43583406 43583458 -116016325 + (GA)n Simple_repeat Simple_repeat 2 53 0 1 917 4638 226 22 37 chr3 43583458 43583590 -116016193 + Lx6 LINE L1 5831 5958 -1502 1 917 3385 250 81 12 chr3 43583607 43583970 -116015813 + Lx6 LINE L1 6490 6885 -575 1 917 1158 61 0 30 chr3 43583970 43584154 -116015629 + (GA)n Simple_repeat Simple_repeat 1 180 -185 1 917 1158 61 0 30 chr3 43584160 43584347 -116015436 + (GA)n Simple_repeat Simple_repeat 181 365 0 1 917 3385 250 81 12 chr3 43584347 43584883 -116014900 + Lx6 LINE L1 6891 7458 -2 1 917 830 336 67 28 chr3 43585414 43585879 -116013904 + Lx8 LINE L1 6823 7305 -168 1 917 398 366 120 5 chr3 43586301 43586493 -116013290 + ID_B1 SINE B4 6 219 -5 1 917 411 21 0 0 chr3 43587311 43587359 -116012424 + (TG)n Simple_repeat Simple_repeat 2 49 0 1 917 252 272 202 5 chr3 43588232 43588388 -116011395 - B2_Mm2 SINE B2 -9 189 1 1 917 352 232 110 28 chr3 43588493 43588675 -116011108 - Lx9 LINE L1 -31 7613 7417 1 917 23 0 0 0 chr3 43588980 43589003 -116010780 + AT_rich Low_complexity Low_complexity 1 23 0 1 917 23 0 0 0 chr3 43589026 43589049 -116010734 + AT_rich Low_complexity Low_complexity 1 23 0 1 917 1185 338 79 69 chr3 43589407 43589866 -116009917 + Lx9 LINE L1 6468 6910 -734 1 917 1813 199 5 33 chr3 43589866 43590256 -116009527 - Lx4B LINE L1 -8 7050 6672 1 917 1185 338 79 69 chr3 43590256 43590776 -116009007 + Lx9 LINE L1 6911 7456 -188 1 917 24 53 0 0 chr3 43590957 43590995 -116008788 + AT_rich Low_complexity Low_complexity 1 38 0 1 917 23 54 0 0 chr3 43591361 43591398 -116008385 + AT_rich Low_complexity Low_complexity 1 37 0 1 917 7077 161 50 13 chr3 43592057 43592614 -116007169 + L1_Mur2 LINE L1 4172 4747 -1130 1 917 225 65 0 0 chr3 43592614 43592645 -116007138 + (CAAA)n Simple_repeat Simple_repeat 4 34 0 1 917 7077 161 50 13 chr3 43592645 43593477 -116006306 + L1_Mur2 LINE L1 4748 5612 -265 1 917 4251 239 40 12 chr3 43593466 43594584 -116005199 + Lx3C LINE L1 5825 6974 -2 1 917 3595 77 0 0 chr3 43594786 43595267 -116004516 - L1Md_F2 LINE L1 -1355 4528 4048 1 917 8019 73 2 1 chr3 43595260 43596316 -116003467 + L1Md_F2 LINE L1 4530 5586 -297 1 917 6941 81 19 20 chr3 43596317 43597312 -116002471 + L1Md_F2 LINE L1 5588 6581 -1 1 917 280 219 0 0 chr3 43597625 43597689 -116002094 + L1_Rod LINE L1 2127 2190 -3657 1 917 540 326 92 17 chr3 43598058 43598709 -116001074 + L1M2 LINE L1 2473 3172 -2971 1 917 265 303 0 0 chr3 43598725 43598801 -116000982 + Lx9 LINE L1 7225 7300 -344 1 917 320 53 0 107 chr3 43598872 43598956 -116000827 + (CAGAGA)n Simple_repeat Simple_repeat 4 78 0 1 917 1313 290 93 12 chr3 43598977 43599463 -116000320 + Lx6 LINE L1 6759 7283 -177 1 917 328 297 40 0 chr3 43599540 43599641 -116000142 + Lx7 LINE L1 7190 7294 -402 1 917 231 203 12 48 chr3 43600349 43600432 -115999351 + (TATAA)n Simple_repeat Simple_repeat 5 84 0 1 917 221 260 0 0 chr3 43600764 43600814 -115998969 + (TTCA)n Simple_repeat Simple_repeat 1 50 0 1 917 223 191 21 0 chr3 43600887 43600934 -115998849 + (TATATG)n Simple_repeat Simple_repeat 6 53 0 1 917 217 226 0 0 chr3 43601022 43601075 -115998708 + (TCTCTG)n Simple_repeat Simple_repeat 6 58 0 1 917 925 254 29 145 chr3 43601084 43601498 -115998285 + ORR1C1 LTR MaLR 1 366 -12 1 917 3872 175 16 1 chr3 43601605 43602315 -115997468 - L1_Mur2 LINE L1 -1476 4401 3682 1 917 5992 130 50 18 chr3 43602307 43603302 -115996481 + Lx LINE L1 5626 6652 -2 1 917 300 27 0 0 chr3 43603752 43603789 -115995994 + (CA)n Simple_repeat Simple_repeat 1 37 0 1 917 501 147 0 0 chr3 43604638 43604733 -115995050 + (TG)n Simple_repeat Simple_repeat 2 96 0 1 917 1013 91 14 0 chr3 43604758 43604901 -115994882 - B1_Mm SINE Alu -1 146 2 1 917 21 0 0 0 chr3 43605891 43605912 -115993871 + AT_rich Low_complexity Low_complexity 1 21 0 1 917 1000 152 0 0 chr3 43605920 43606065 -115993718 + B1_Mus2 SINE Alu 2 146 -1 1 917 378 0 0 0 chr3 43606144 43606186 -115993597 + (CA)n Simple_repeat Simple_repeat 2 43 0 1 917 495 0 0 0 chr3 43607323 43607378 -115992405 + (CA)n Simple_repeat Simple_repeat 2 56 0 1 917 3588 175 42 16 chr3 43608560 43609297 -115990486 + RMER6A LTR ERVK 1 756 0 1 917 372 138 0 0 chr3 43609551 43609616 -115990167 + (CAT)n Simple_repeat Simple_repeat 2 66 0 1 917 3024 52 34 0 chr3 43609634 43610017 -115989766 - MTA_Mm LTR MaLR 0 396 1 1 917 305 366 20 0 chr3 43610091 43610192 -115989591 - PB1D10 SINE Alu -8 109 7 1 917 774 84 0 0 chr3 43610541 43610648 -115989135 + (TG)n Simple_repeat Simple_repeat 2 108 0 1 917 425 367 27 43 chr3 43611432 43611620 -115988163 - B3A SINE B2 -6 192 8 1 917 226 300 93 0 chr3 43612061 43612201 -115987582 + L1MA5 LINE L1 6148 6300 0 1 917 31854 97 8 6 chr3 43612510 43618695 -115981088 - L1Md_F2 LINE L1 -11 6571 373 1 917 2698 262 106 44 chr3 43618859 43619867 -115979916 + Lx7 LINE L1 6602 7672 -24 1 917 381 148 0 0 chr3 43619868 43619949 -115979834 + (CA)n Simple_repeat Simple_repeat 2 82 0 1 917 374 157 12 0 chr3 43619966 43620049 -115979734 + (TA)n Simple_repeat Simple_repeat 2 85 0 1 917 356 329 92 7 chr3 43621199 43621340 -115978443 + ID_B1 SINE B4 22 174 -50 1 917 398 345 0 0 chr3 43622345 43622487 -115977296 + (CA)n Simple_repeat Simple_repeat 2 143 0 1 917 288 242 13 26 chr3 43622524 43622677 -115977106 + (CATA)n Simple_repeat Simple_repeat 4 154 0 1 917 183 276 0 0 chr3 43622705 43622781 -115977002 + (CATA)n Simple_repeat Simple_repeat 3 78 0 1 917 701 175 25 0 chr3 43623556 43623716 -115976067 + L1_Mur3 LINE L1 3127 3290 -2590 1 917 29 0 0 0 chr3 43623756 43623785 -115975998 + AT_rich Low_complexity Low_complexity 1 29 0 1 917 6448 46 24 4 chr3 43623996 43624845 -115974938 + L1Md_F3 LINE L1 5728 6584 0 1 917 270 160 0 0 chr3 43624850 43624900 -115974883 + A-rich Low_complexity Low_complexity 1 50 0 1 917 195 42 0 0 chr3 43625093 43625117 -115974666 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 1 917 186 43 0 0 chr3 43625130 43625153 -115974630 + (CAA)n Simple_repeat Simple_repeat 2 24 0 1 917 2554 236 22 42 chr3 43625614 43625901 -115973882 + Lx6 LINE L1 6625 6895 -565 1 917 690 13 0 0 chr3 43625901 43625980 -115973803 + (GA)n Simple_repeat Simple_repeat 2 80 0 1 917 2554 236 22 42 chr3 43625980 43626316 -115973467 + Lx6 LINE L1 6896 7236 -224 1 917 1183 208 36 68 chr3 43626316 43626765 -115973018 + RMER17C LTR ERVK 1 441 -517 1 917 546 229 82 24 chr3 43626765 43626935 -115972848 + Lx7 LINE L1 7493 7672 -24 1 917 4594 76 16 0 chr3 43626983 43627265 -115972518 + L1Md_F2 LINE L1 4953 5234 -649 1 917 261 0 0 0 chr3 43627265 43627294 -115972489 + (TA)n Simple_repeat Simple_repeat 1 29 0 1 917 4594 76 16 0 chr3 43627294 43627630 -115972153 + L1Md_F2 LINE L1 5235 5579 -304 1 917 7388 77 1 9 chr3 43627635 43628637 -115971146 + L1Md_F2 LINE L1 5587 6580 -2 1 917 32 43 0 0 chr3 43628697 43628743 -115971040 + AT_rich Low_complexity Low_complexity 1 46 0 1 917 34218 70 10 3 chr3 43630061 43635496 -115964287 - L1Md_F2 LINE L1 0 6582 1108 2 917 4636 82 71 0 chr3 43635464 43636113 -115963670 - L1Md_F2 LINE L1 -5411 1205 511 2 917 26 50 0 0 chr3 43636119 43636159 -115963624 + AT_rich Low_complexity Low_complexity 1 40 0 2 917 21 36 0 0 chr3 43636170 43636198 -115963585 + AT_rich Low_complexity Low_complexity 1 28 0 2 917 928 32 16 0 chr3 43636338 43636462 -115963321 + (TA)n Simple_repeat Simple_repeat 2 127 0 2 917 2670 70 3 0 chr3 43636628 43636969 -115962814 + ORR1A1 LTR MaLR 1 342 -4 2 917 887 163 0 6 chr3 43637610 43637777 -115962006 + GA-rich Low_complexity Low_complexity 2 167 0 2 917 4256 169 36 17 chr3 43637858 43638698 -115961085 + Lx LINE L1 4611 5466 -417 2 917 5037 133 21 50 chr3 43638699 43639609 -115960174 + Lx LINE L1 5763 6645 -9 2 917 22 80 0 0 chr3 43639989 43640039 -115959744 + AT_rich Low_complexity Low_complexity 1 50 0 2 917 378 0 0 0 chr3 43640327 43640369 -115959414 + (TG)n Simple_repeat Simple_repeat 2 43 0 2 917 2793 229 73 89 chr3 43640821 43641599 -115958184 - RMER13A LTR ERVK -94 766 1 2 917 27 29 0 0 chr3 43641615 43641649 -115958134 + AT_rich Low_complexity Low_complexity 1 34 0 2 917 276 321 92 50 chr3 43641788 43641929 -115957854 - MLT1D LTR MaLR -75 430 284 2 917 479 95 14 0 chr3 43643358 43643432 -115956351 + (CA)n Simple_repeat Simple_repeat 2 76 0 2 917 186 103 0 0 chr3 43645755 43645784 -115953999 + (TTA)n Simple_repeat Simple_repeat 2 30 0 2 917 333 0 0 0 chr3 43645869 43645906 -115953877 + (TTTA)n Simple_repeat Simple_repeat 3 39 0 2 917 21 36 0 0 chr3 43646265 43646293 -115953490 + AT_rich Low_complexity Low_complexity 1 28 0 2 917 337 332 102 20 chr3 43646497 43646694 -115953089 + MLT1D LTR MaLR 269 481 -24 2 917 272 256 11 34 chr3 43646698 43646787 -115952996 + GA-rich Low_complexity Low_complexity 3 89 0 2 114 317 311 90 98 chr3 43646859 43647525 -115952258 + L1M4b LINE L1 1310 1970 -5364 2 918 372 288 219 52 chr3 43647802 43648190 -115951593 + L1M4b LINE L1 2317 2769 -4565 2 918 270 271 0 0 chr3 43648230 43648326 -115951457 + (CA)n Simple_repeat Simple_repeat 2 97 0 2 918 255 244 0 0 chr3 43648379 43648457 -115951326 + (TA)n Simple_repeat Simple_repeat 2 79 0 2 918 481 225 0 43 chr3 43650203 43650319 -115949464 + RMER6C LTR ERVK 535 645 -45 2 918 1499 78 0 0 chr3 43650502 43650693 -115949090 + B2_Mm1a SINE B2 2 192 -1 2 918 27 29 0 0 chr3 43650701 43650735 -115949048 + AT_rich Low_complexity Low_complexity 1 34 0 2 918 24 53 0 0 chr3 43650780 43650818 -115948965 + AT_rich Low_complexity Low_complexity 1 38 0 2 918 21 36 0 0 chr3 43651289 43651317 -115948466 + AT_rich Low_complexity Low_complexity 1 28 0 2 918 276 53 0 0 chr3 43651855 43651893 -115947890 + (T)n Simple_repeat Simple_repeat 1 38 0 2 918 22 56 0 0 chr3 43652573 43652609 -115947174 + AT_rich Low_complexity Low_complexity 1 36 0 2 918 1389 316 33 27 chr3 43652889 43653827 -115945956 + Lx6 LINE L1 6190 7443 -17 2 918 639 208 36 0 chr3 43653906 43654074 -115945709 - Lx2B LINE L1 0 7000 6827 2 918 6339 196 27 1 chr3 43654074 43655583 -115944200 + Lx2 LINE L1 5277 6820 -177 2 918 299 249 70 140 chr3 43655807 43655894 -115943889 - RMER17C LTR ERVK -158 252 183 2 918 1148 86 11 0 chr3 43655894 43656068 -115943715 + (GGAGA)n Simple_repeat Simple_repeat 5 180 0 2 918 299 249 70 140 chr3 43656068 43656251 -115943532 - RMER17C LTR ERVK -228 182 2 2 918 2037 188 70 21 chr3 43656251 43656680 -115943103 - RMER17C-int LTR ERVK 0 3238 2789 2 918 5983 107 34 30 chr3 43656681 43658247 -115941536 + L1Md_F2 LINE L1 515 2088 -3795 2 918 2865 15 0 43 chr3 43658248 43658600 -115941183 - IAPLTR1a_Mm LTR ERVK 0 337 1 2 918 55199 20 20 6 chr3 43658600 43664987 -115934796 - IAPEz-int LTR ERVK 0 6481 8 2 918 2865 15 0 43 chr3 43664987 43665339 -115934444 - IAPLTR1a_Mm LTR ERVK 0 337 1 2 918 12200 103 7 2 chr3 43665339 43665987 -115933796 + L1Md_F2 LINE L1 2086 2739 -3144 2 918 342 0 0 0 chr3 43665987 43666025 -115933758 + (TA)n Simple_repeat Simple_repeat 2 39 0 2 918 18347 99 2 77 chr3 43666025 43669103 -115930680 + L1Md_F2 LINE L1 2740 5586 -297 2 918 7035 90 10 3 chr3 43669103 43670092 -115929691 + L1Md_F2 LINE L1 5587 6582 0 2 918 203 116 0 44 chr3 43670095 43670140 -115929643 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 2 918 1193 153 10 5 chr3 43670141 43670344 -115929439 - RMER17C-int LTR ERVK -440 2798 2595 2 918 1582 257 80 48 chr3 43670351 43670928 -115928855 + RLTR1 LTR ERV1 30 624 0 2 918 498 186 86 76 chr3 43670931 43671023 -115928760 - RMER17C-int LTR ERVK -644 2594 2506 2 918 369 0 0 0 chr3 43671023 43671064 -115928719 + (TG)n Simple_repeat Simple_repeat 2 42 0 2 918 498 186 86 76 chr3 43671064 43671169 -115928614 - RMER17C-int LTR ERVK -733 2505 2397 2 918 581 170 46 78 chr3 43671192 43671345 -115928438 - RMER17C-int LTR ERVK -1895 1343 1196 2 918 222 37 0 0 chr3 43671349 43671376 -115928407 + (TTA)n Simple_repeat Simple_repeat 1 27 0 2 918 1110 143 0 0 chr3 43671376 43671558 -115928225 - L1_Mus1 LINE L1 -10 6557 6376 2 918 1172 106 56 0 chr3 43671559 43671758 -115928025 + L1_Mus1 LINE L1 6022 6243 -339 2 918 319 207 17 0 chr3 43671758 43671816 -115927967 - RMER17C-int LTR ERVK -2081 1157 1099 2 918 309 208 49 59 chr3 43672283 43672385 -115927398 - RMER17C-int LTR ERVK -2635 603 503 2 918 1078 224 36 79 chr3 43672422 43672727 -115927056 - RMER17C-int LTR ERVK -2723 515 224 2 918 438 239 70 121 chr3 43672905 43673062 -115926721 - RMER17C LTR ERVK -20 390 242 2 918 7378 50 8 22 chr3 43673160 43674121 -115925662 + L1Md_F3 LINE L1 5637 6584 0 2 918 1397 262 57 7 chr3 43674148 43674552 -115925231 - Lx9 LINE L1 -569 7075 6652 2 918 210 37 0 0 chr3 43674843 43674870 -115924913 + (CAAAAA)n Simple_repeat Simple_repeat 4 30 0 2 918 21 95 0 0 chr3 43675374 43675437 -115924346 + AT_rich Low_complexity Low_complexity 1 63 0 2 918 624 323 22 49 chr3 43675531 43675798 -115923985 + MTD LTR MaLR 1 260 -159 2 918 627 297 30 17 chr3 43675806 43676039 -115923744 - Lx9 LINE L1 -712 6932 6697 2 918 2464 204 91 42 chr3 43676046 43676695 -115923088 + RMER6C LTR ERVK 4 684 -6 2 918 504 72 0 0 chr3 43676977 43677046 -115922737 + (TGG)n Simple_repeat Simple_repeat 3 71 0 2 918 465 50 0 0 chr3 43677046 43677106 -115922677 + (TG)n Simple_repeat Simple_repeat 1 60 0 2 918 467 278 28 7 chr3 43677415 43677560 -115922223 + Lx9 LINE L1 7123 7270 -374 2 918 3800 88 6 2 chr3 43677573 43678099 -115921684 - L1_Mus2 LINE L1 0 6566 6039 2 918 1119 217 18 161 chr3 43678108 43678230 -115921553 - ORR1A4 LTR MaLR 0 329 249 2 918 574 75 21 0 chr3 43678230 43678324 -115921459 - L1_Mus1 LINE L1 0 6567 6472 2 918 1119 217 18 161 chr3 43678324 43678585 -115921198 - ORR1A4 LTR MaLR -81 248 1 2 918 477 34 0 0 chr3 43678624 43678683 -115921100 + (CA)n Simple_repeat Simple_repeat 1 59 0 2 918 206 79 0 50 chr3 43678683 43678723 -115921060 + (CAAAAA)n Simple_repeat Simple_repeat 1 38 0 2 918 219 88 0 0 chr3 43678725 43678759 -115921024 + (CCAA)n Simple_repeat Simple_repeat 2 35 0 2 918 331 251 92 31 chr3 43678783 43679072 -115920711 + Lx9 LINE L1 7313 7643 -1 2 918 414 69 0 0 chr3 43680175 43680233 -115919550 + (TAAA)n Simple_repeat Simple_repeat 4 61 0 2 918 225 103 0 0 chr3 43680307 43680336 -115919447 + Lx9 LINE L1 7192 7220 -424 2 918 431 18 18 0 chr3 43680338 43680394 -115919389 + (CA)n Simple_repeat Simple_repeat 2 58 0 2 918 517 98 79 43 chr3 43680837 43680976 -115918807 - Lx3_Mus LINE L1 0 7009 6866 2 918 405 0 0 0 chr3 43680980 43681025 -115918758 + (TG)n Simple_repeat Simple_repeat 2 46 0 2 918 494 204 0 0 chr3 43681633 43681726 -115918057 + BC1_Mm scRNA scRNA 1 93 -59 2 918 27 0 0 0 chr3 43681922 43681949 -115917834 + AT_rich Low_complexity Low_complexity 1 27 0 2 918 225 0 0 0 chr3 43682162 43682187 -115917596 + (TAAAAA)n Simple_repeat Simple_repeat 2 26 0 2 918 37432 48 1 3 chr3 43682275 43688668 -115911115 - L1Md_T LINE L1 0 6585 109 2 918 4106 200 25 25 chr3 43692101 43692896 -115906887 - Lx2B LINE L1 -426 6574 5783 2 918 3651 97 2 6 chr3 43692896 43693413 -115906370 - L1Md_F2 LINE L1 -3 6579 6065 2 918 4106 200 25 25 chr3 43693413 43693535 -115906248 - Lx2B LINE L1 -1218 5782 5657 2 918 1133 275 59 21 chr3 43693525 43693897 -115905886 + Lx3C LINE L1 6583 6968 -8 2 918 295 213 40 13 chr3 43695350 43695426 -115904357 + GA-rich Low_complexity Low_complexity 6 83 0 2 918 25 31 0 0 chr3 43696063 43696095 -115903688 + AT_rich Low_complexity Low_complexity 1 32 0 2 918 562 256 22 14 chr3 43696237 43696376 -115903407 - B1_Mus1 SINE Alu -8 140 1 2 918 3714 34 0 96 chr3 43696389 43696912 -115902871 + MMERVK10C-int LTR ERVK 7109 7581 0 2 918 3697 35 7 0 chr3 43696912 43697345 -115902438 + RLTR10C LTR ERVK 1 436 0 2 918 29 60 0 0 chr3 43698268 43698318 -115901465 + AT_rich Low_complexity Low_complexity 1 50 0 2 918 29 28 0 0 chr3 43699071 43699107 -115900676 + AT_rich Low_complexity Low_complexity 1 36 0 2 918 235 406 0 0 chr3 43699300 43699396 -115900387 - Charlie7a DNA MER1_type -176 96 1 2 918 32 43 0 0 chr3 43699537 43699583 -115900200 + AT_rich Low_complexity Low_complexity 1 46 0 2 918 213 94 0 0 chr3 43699688 43699720 -115900063 + (TG)n Simple_repeat Simple_repeat 1 32 0 2 918 25 31 0 0 chr3 43699762 43699794 -115899989 + AT_rich Low_complexity Low_complexity 1 32 0 2 918 676 336 91 36 chr3 43700775 43701105 -115898678 - ORR1E LTR MaLR -6 353 6 2 918 1714 96 20 0 chr3 43701412 43701663 -115898120 - L1_Mus3 LINE L1 -9 6629 6374 2 918 676 129 16 8 chr3 43701674 43701799 -115897984 - L1_Mus3 LINE L1 -7 6631 6506 2 918 2075 139 0 0 chr3 43701799 43702109 -115897674 + L1_Mus3 LINE L1 6161 6470 -168 2 918 6515 138 17 64 chr3 43702103 43704071 -115895712 - L1_Mus3 LINE L1 -251 6387 4506 2 918 1424 149 8 19 chr3 43704113 43704379 -115895404 + Lx2 LINE L1 6726 6988 -9 2 918 291 54 0 0 chr3 43704490 43704527 -115895256 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 2 918 429 315 54 0 chr3 43704532 43704662 -115895121 - B1F SINE Alu -1 148 12 2 918 232 303 12 50 chr3 43704591 43704671 -115895112 - B4A SINE B4 -129 163 87 2 918 2990 201 62 17 chr3 43704842 43705485 -115894298 - Lx4A LINE L1 0 7058 6387 2 918 3058 32 82 0 chr3 43705485 43705865 -115893918 + IAPLTR2_Mm LTR ERVK 1 411 0 2 918 1073 99 25 81 chr3 43705866 43706064 -115893719 + IAPEz-int LTR ERVK 9 195 -6286 2 918 244 302 0 0 chr3 43706064 43706117 -115893666 + RLTR27 LTR ERVK 223 275 -34 2 918 3504 66 4 16 chr3 43706117 43706695 -115893088 + IAPEz-int LTR ERVK 168 662 -5819 2 918 2695 61 0 3 chr3 43706695 43707038 -115892745 + IAPEz-int LTR ERVK 1359 1700 -4781 2 918 5964 63 45 11 chr3 43707031 43707833 -115891950 + IAPEz-int LTR ERVK 5651 6479 -2 2 918 3485 28 97 2 chr3 43707835 43708268 -115891515 + IAPLTR2_Mm LTR ERVK 1 474 -1 2 918 680 192 1 3 chr3 43708272 43708411 -115891372 - Lx4A LINE L1 -669 6389 6230 2 918 223 286 0 18 chr3 43709028 43709085 -115890698 - B4A SINE B4 -209 83 28 2 918 3828 54 0 10 chr3 43709139 43709629 -115890154 - L1_Mm LINE L1 -308 5575 5091 2 918 4369 52 23 2 chr3 43709629 43710186 -115889597 + L1Md_F2 LINE L1 6002 6570 -12 2 918 22 0 0 0 chr3 43710199 43710221 -115889562 + AT_rich Low_complexity Low_complexity 1 22 0 2 918 252 250 31 0 chr3 43710652 43710716 -115889067 + MTD LTR MaLR 354 419 0 2 918 23 33 0 0 chr3 43710795 43710825 -115888958 + AT_rich Low_complexity Low_complexity 1 30 0 2 918 23 54 0 0 chr3 43710936 43710973 -115888810 + AT_rich Low_complexity Low_complexity 1 37 0 2 918 256 318 0 0 chr3 43711747 43711813 -115887970 + C-rich Low_complexity Low_complexity 1 66 0 2 918 885 172 0 0 chr3 43712856 43713036 -115886747 + (CA)n Simple_repeat Simple_repeat 1 180 0 2 918 24 0 0 0 chr3 43713398 43713422 -115886361 + AT_rich Low_complexity Low_complexity 1 24 0 2 918 2517 200 83 26 chr3 43713682 43714335 -115885448 + RMER6C LTR ERVK 1 690 0 2 918 1965 157 9 3 chr3 43714484 43714816 -115884967 + RLTR15 LTR ERVK 1 334 -25 2 918 236 53 0 26 chr3 43715269 43715308 -115884475 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 3 918 1087 86 0 0 chr3 43715308 43715447 -115884336 - B1_Mus1 SINE Alu -9 139 1 3 918 335 360 75 0 chr3 43715909 43716056 -115883727 + MTE-int LTR MaLR 770 927 -653 3 918 201 74 0 0 chr3 43716110 43716137 -115883646 + (TG)n Simple_repeat Simple_repeat 1 27 0 3 918 780 11 0 0 chr3 43716145 43716234 -115883549 + (GA)n Simple_repeat Simple_repeat 2 90 0 3 918 229 343 100 43 chr3 43716420 43716630 -115883153 + MTE-int LTR MaLR 1273 1494 -86 3 918 2746 121 41 11 chr3 43717145 43717588 -115882195 - Lx LINE L1 -5 6649 6194 3 918 724 294 122 43 chr3 43717745 43718210 -115881573 - RMER2 LTR ERV1 -26 541 1 3 918 249 265 75 12 chr3 43720216 43720321 -115879462 + L1MC4 LINE L1 6440 6560 -1482 3 918 575 301 88 54 chr3 43720667 43721054 -115878729 - Lx9 LINE L1 -19 7625 7226 3 918 459 250 0 9 chr3 43722170 43722278 -115877505 - RMER6A LTR ERVK 0 756 650 3 918 3978 138 43 9 chr3 43722278 43722929 -115876854 - RLTR33 LTR ERVK 0 678 6 3 918 3250 174 25 23 chr3 43723104 43723750 -115876033 - RMER6A LTR ERVK -109 647 1 3 918 332 94 19 0 chr3 43723788 43723841 -115875942 + (TAGA)n Simple_repeat Simple_repeat 3 56 0 3 918 342 0 0 0 chr3 43723961 43723999 -115875784 + (TATG)n Simple_repeat Simple_repeat 3 40 0 3 918 22 0 0 0 chr3 43724581 43724603 -115875180 + AT_rich Low_complexity Low_complexity 1 22 0 3 918 345 337 122 86 chr3 43724606 43724885 -115874898 + B4A SINE B4 2 290 -2 3 918 560 259 22 0 chr3 43725377 43725512 -115874271 + B1_Mus1 SINE Alu 11 148 0 3 918 711 279 24 5 chr3 43725699 43725904 -115873879 + B3 SINE B2 2 210 -6 3 918 666 127 0 0 chr3 43726760 43726886 -115872897 + (TC)n Simple_repeat Simple_repeat 1 126 0 3 918 275 85 0 21 chr3 43726886 43726934 -115872849 + (TG)n Simple_repeat Simple_repeat 2 48 0 3 918 536 364 62 45 chr3 43727149 43727569 -115872214 - LTR80A LTR ERVL -19 564 138 3 918 21 36 0 0 chr3 43728345 43728373 -115871410 + AT_rich Low_complexity Low_complexity 1 28 0 3 918 1736 275 14 62 chr3 43728408 43728904 -115870879 - RMER1C Other Other -245 1097 626 3 918 1572 249 122 36 chr3 43728914 43729465 -115870318 - RMER19C LTR ERVK -13 598 1 3 918 794 280 79 5 chr3 43729510 43729725 -115870058 + 7SK RNA RNA 15 245 -86 3 918 956 111 0 15 chr3 43729797 43729934 -115869849 + B1_Mus2 SINE Alu 1 135 -12 3 918 207 0 0 0 chr3 43729934 43729957 -115869826 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 3 918 212 352 22 0 chr3 43730184 43730275 -115869508 + B3A SINE B2 1 93 -105 3 918 300 311 37 15 chr3 43730271 43730405 -115869378 - MLT2C2 LTR ERVL -307 157 21 3 918 983 80 7 0 chr3 43731069 43731206 -115868577 - B1_Mus1 SINE Alu 0 148 11 3 918 225 209 0 0 chr3 43731221 43731264 -115868519 + A-rich Low_complexity Low_complexity 1 43 0 3 918 326 186 0 0 chr3 43731450 43731520 -115868263 - L1Md_F2 LINE L1 0 6582 6513 3 918 2213 48 10 7 chr3 43732016 43732310 -115867473 - L1Md_F3 LINE L1 -1 6583 6289 3 918 544 310 21 0 chr3 43732783 43732928 -115866855 + B1F2 SINE Alu 2 149 0 3 918 210 139 0 0 chr3 43733305 43733341 -115866442 + (GA)n Simple_repeat Simple_repeat 2 37 0 3 918 198 244 0 24 chr3 43733404 43733446 -115866337 + MER5B DNA MER1_type 90 130 -48 3 918 573 55 0 0 chr3 43734615 43734688 -115865095 + (TA)n Simple_repeat Simple_repeat 2 74 0 3 918 24 85 0 0 chr3 43735716 43735775 -115864008 + AT_rich Low_complexity Low_complexity 1 59 0 3 918 2941 147 4 10 chr3 43735843 43736332 -115863451 - Lx3B LINE L1 -1 6972 6487 3 918 338 287 26 0 chr3 43736376 43736491 -115863292 + L1MC LINE L1 3613 3730 -2416 3 918 23 0 0 0 chr3 43736514 43736537 -115863246 + AT_rich Low_complexity Low_complexity 1 23 0 3 918 2983 301 26 34 chr3 43736702 43737726 -115862057 - Lx7 LINE L1 -283 7413 6398 3 918 453 36 0 0 chr3 43738300 43738355 -115861428 + (TA)n Simple_repeat Simple_repeat 1 55 0 3 918 225 65 0 0 chr3 43738356 43738387 -115861396 + (TG)n Simple_repeat Simple_repeat 1 31 0 3 918 357 305 16 8 chr3 43738535 43738664 -115861119 + Lx8 LINE L1 7064 7193 -280 3 918 448 325 131 38 chr3 43739474 43739765 -115860018 - ORR1E LTR MaLR -5 354 37 3 918 21 0 0 0 chr3 43739798 43739819 -115859964 + AT_rich Low_complexity Low_complexity 1 21 0 3 918 878 101 0 182 chr3 43740090 43740271 -115859512 - B1_Mus1 SINE Alu 0 148 1 3 918 3848 192 19 19 chr3 43740300 43741136 -115858647 - Lx2 LINE L1 -108 6889 6016 3 918 560 257 26 0 chr3 43741138 43741290 -115858493 + Lx2B LINE L1 6830 6985 -15 3 918 291 281 24 12 chr3 43741294 43741377 -115858406 + GA-rich Low_complexity Low_complexity 3 86 0 3 918 353 338 32 44 chr3 43741377 43741535 -115858248 + HAL1-3A_ME LINE L1 2284 2439 -419 3 918 317 290 121 14 chr3 43741521 43741661 -115858122 + HAL1-3A_ME LINE L1 2285 2439 -419 3 918 416 285 6 0 chr3 43741685 43741864 -115857919 + GA-rich Low_complexity Low_complexity 1 180 0 3 918 498 292 3 30 chr3 43741875 43742764 -115857019 + GA-rich Low_complexity Low_complexity 1 864 0 3 918 531 321 6 25 chr3 43742783 43743076 -115856707 + GA-rich Low_complexity Low_complexity 1 287 0 3 918 304 247 2 38 chr3 43743108 43743536 -115856247 + GA-rich Low_complexity Low_complexity 1 412 0 3 918 439 244 16 22 chr3 43743549 43744009 -115855774 + GA-rich Low_complexity Low_complexity 1 456 0 3 918 197 244 24 32 chr3 43744115 43744238 -115855545 + GA-rich Low_complexity Low_complexity 4 125 0 3 918 310 312 121 21 chr3 43744286 43744427 -115855356 + HAL1-3A_ME LINE L1 2285 2439 -419 3 918 412 288 0 21 chr3 43744427 43745006 -115854777 + GA-rich Low_complexity Low_complexity 1 566 0 3 918 303 277 0 26 chr3 43745083 43745319 -115854464 + GA-rich Low_complexity Low_complexity 1 229 0 3 918 329 297 37 92 chr3 43745321 43745484 -115854299 + HAL1-3A_ME LINE L1 2288 2441 -417 3 918 311 255 87 87 chr3 43745556 43745706 -115854077 + HAL1-3A_ME LINE L1 2285 2434 -424 3 918 438 280 7 27 chr3 43745710 43746150 -115853633 + GA-rich Low_complexity Low_complexity 1 431 0 3 918 325 292 105 39 chr3 43746156 43746309 -115853474 + HAL1-3A_ME LINE L1 2281 2443 -415 3 918 223 200 30 60 chr3 43746342 43746475 -115853308 + GA-rich Low_complexity Low_complexity 5 133 0 3 918 304 292 111 37 chr3 43746496 43746631 -115853152 + HAL1-3A_ME LINE L1 2293 2437 -421 3 918 198 246 0 0 chr3 43746661 43746722 -115853061 + GA-rich Low_complexity Low_complexity 3 63 0 3 918 316 309 143 29 chr3 43746746 43746886 -115852897 + HAL1-3A_ME LINE L1 2284 2439 -419 3 918 453 261 13 27 chr3 43746899 43747203 -115852580 + GA-rich Low_complexity Low_complexity 1 299 0 3 918 314 262 11 28 chr3 43747247 43747909 -115851874 + GA-rich Low_complexity Low_complexity 1 650 0 3 918 191 167 24 0 chr3 43747954 43747996 -115851787 + GA-rich Low_complexity Low_complexity 1 43 0 3 918 354 310 8 16 chr3 43748022 43748284 -115851499 + GA-rich Low_complexity Low_complexity 1 259 0 3 918 331 219 24 42 chr3 43748330 43748497 -115851286 + GA-rich Low_complexity Low_complexity 3 166 0 3 918 291 225 9 26 chr3 43748510 43748624 -115851159 + GA-rich Low_complexity Low_complexity 1 112 0 3 918 300 258 99 70 chr3 43748629 43748771 -115851012 + HAL1-3A_ME LINE L1 2292 2437 -421 3 918 323 336 39 39 chr3 43748811 43748966 -115850817 + HAL1-3A_ME LINE L1 2284 2438 -420 3 918 345 272 13 8 chr3 43748966 43749367 -115850416 + GA-rich Low_complexity Low_complexity 1 403 0 3 918 327 354 83 7 chr3 43749367 43749512 -115850271 + HAL1-3A_ME LINE L1 2284 2439 -419 3 918 330 381 8 8 chr3 43749512 43749639 -115850144 + polypurine Low_complexity Low_complexity 6 132 0 3 918 261 0 0 0 chr3 43749654 43749683 -115850100 + (A)n Simple_repeat Simple_repeat 1 29 0 3 918 23 33 0 0 chr3 43750334 43750364 -115849419 + AT_rich Low_complexity Low_complexity 1 30 0 3 918 510 332 43 24 chr3 43750652 43750859 -115848924 - B3A SINE B2 -3 213 3 3 918 2141 42 0 0 chr3 43750910 43751171 -115848612 + L1Md_T LINE L1 6322 6582 0 3 918 4518 48 7 0 chr3 43751174 43751735 -115848048 + L1Md_F2 LINE L1 6005 6569 -13 3 918 978 60 45 0 chr3 43751808 43751942 -115847841 + L1_Mus1 LINE L1 6427 6566 -1 3 918 246 81 0 0 chr3 43751948 43751985 -115847798 + (TAAA)n Simple_repeat Simple_repeat 4 40 0 3 918 261 336 0 9 chr3 43754237 43754342 -115845441 + CT-rich Low_complexity Low_complexity 4 107 0 3 918 407 19 0 19 chr3 43754889 43754942 -115844841 + (GA)n Simple_repeat Simple_repeat 1 52 0 3 918 339 202 36 42 chr3 43756611 43756776 -115843007 + (TATAA)n Simple_repeat Simple_repeat 2 165 0 3 918 563 267 44 35 chr3 43756874 43757073 -115842710 - MTD LTR MaLR -14 405 209 3 918 277 234 76 25 chr3 43757050 43757129 -115842654 - MT2B LTR ERVL -346 255 173 3 918 654 126 48 0 chr3 43757106 43757209 -115842574 - RMER6C LTR ERVK -579 111 4 3 918 470 31 16 0 chr3 43757239 43757303 -115842480 + (TG)n Simple_repeat Simple_repeat 2 66 0 3 918 588 327 30 32 chr3 43757305 43757721 -115842062 - Lx9 LINE L1 -172 7472 7017 3 918 672 36 0 0 chr3 43757721 43757804 -115841979 + (TG)n Simple_repeat Simple_repeat 2 84 0 3 918 588 302 29 29 chr3 43757804 43757870 -115841913 - Lx9 LINE L1 -628 7016 6952 3 918 37447 19 1 7 chr3 43758158 43763366 -115836417 + L1Md_A LINE L1 415 5586 -297 3 918 8683 19 1 0 chr3 43763366 43764360 -115835423 + L1Md_A LINE L1 5587 6581 -1 3 918 204 67 0 0 chr3 43765114 43765144 -115834639 + (CAAA)n Simple_repeat Simple_repeat 3 32 0 3 918 228 261 0 28 chr3 43766487 43766558 -115833225 - Lx8 LINE L1 -9 7464 7396 3 918 233 292 19 86 chr3 43766576 43766681 -115833102 - LTR68 LTR ERV1 -148 592 495 3 918 32532 90 6 2 chr3 43766741 43770298 -115829485 - L1Md_F2 LINE L1 -16 6566 2998 3 918 213 65 0 0 chr3 43770298 43770329 -115829454 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 3 918 32532 92 5 2 chr3 43770329 43772160 -115827623 - L1Md_F2 LINE L1 -2886 2997 1160 3 918 3423 179 8 11 chr3 43772154 43772903 -115826880 - L1Md_F2 LINE L1 -5521 1203 237 3 918 22 0 0 0 chr3 43773462 43773484 -115826299 + AT_rich Low_complexity Low_complexity 1 22 0 3 918 890 278 126 25 chr3 43774100 43774458 -115825325 + MTD LTR MaLR 1 394 -25 3 918 279 300 240 0 chr3 43774523 43774623 -115825160 + RSINE1 SINE B4 5 128 -37 3 918 423 0 0 0 chr3 43774642 43774689 -115825094 + (CA)n Simple_repeat Simple_repeat 1 47 0 3 918 23 33 0 0 chr3 43774718 43774748 -115825035 + AT_rich Low_complexity Low_complexity 1 30 0 3 918 27 29 0 0 chr3 43774993 43775027 -115824756 + AT_rich Low_complexity Low_complexity 1 34 0 3 918 233 56 0 0 chr3 43775118 43775154 -115824629 - Lx LINE L1 -8 6646 6611 3 918 3729 156 20 9 chr3 43775169 43775810 -115823973 - L1_Mus4 LINE L1 -6 6630 5983 3 918 7273 183 88 29 chr3 43775810 43776653 -115823130 + L1_Mus2 LINE L1 4144 4975 -902 4 918 231 36 0 0 chr3 43776653 43776681 -115823102 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 4 114 7273 129 33 12 chr3 43776681 43778156 -115821627 + L1_Mus2 LINE L1 4976 6566 0 4 919 2798 129 23 24 chr3 43778168 43778826 -115820957 + L1_Mus4 LINE L1 5357 5996 -640 4 919 213 114 0 0 chr3 43778963 43778975 -115820808 + (TA)n Simple_repeat Simple_repeat 1 12 0 4 919 243 0 0 0 chr3 43778975 43779002 -115820781 + (TG)n Simple_repeat Simple_repeat 2 28 0 4 919 213 114 0 0 chr3 43779002 43779024 -115820759 + (TA)n Simple_repeat Simple_repeat 1 22 0 4 919 405 0 0 0 chr3 43779128 43779173 -115820610 + (TA)n Simple_repeat Simple_repeat 1 45 0 4 919 216 111 0 0 chr3 43779173 43779209 -115820574 + (TG)n Simple_repeat Simple_repeat 2 37 0 4 919 1689 169 11 3 chr3 43779210 43779495 -115820288 - RLTR27 LTR ERVK -22 287 1 4 919 1243 158 19 97 chr3 43780114 43780373 -115819410 - ORR1A2 LTR MaLR -86 241 3 4 919 297 0 0 0 chr3 43780468 43780501 -115819282 + (CA)n Simple_repeat Simple_repeat 2 34 0 4 919 333 0 0 0 chr3 43780501 43780537 -115819246 + (TA)n Simple_repeat Simple_repeat 1 37 0 4 919 315 49 48 16 chr3 43780695 43780757 -115819026 + (TTTTG)n Simple_repeat Simple_repeat 2 65 0 4 919 1151 62 7 0 chr3 43780794 43780940 -115818843 - B1_Mm SINE Alu 0 147 1 4 919 1260 304 83 130 chr3 43781169 43782443 -115817340 + Lx9 LINE L1 6428 7641 -3 4 919 2880 266 28 3 chr3 43782598 43783266 -115816517 + Lx5 LINE L1 6317 7001 -49 4 919 917 169 0 11 chr3 43783287 43783467 -115816316 + GA-rich Low_complexity Low_complexity 1 178 0 4 919 441 148 0 0 chr3 43783472 43783553 -115816230 + (GGAA)n Simple_repeat Simple_repeat 4 84 0 4 919 21 57 0 0 chr3 43783767 43783802 -115815981 + AT_rich Low_complexity Low_complexity 1 35 0 4 919 262 313 180 13 chr3 43783854 43784165 -115815618 + Lx9 LINE L1 7197 7559 -85 4 919 309 336 133 0 chr3 43784556 43784669 -115815114 + B3A SINE B2 41 168 -30 4 919 5649 158 47 9 chr3 43785332 43786466 -115813317 + Lx LINE L1 5488 6653 -1 4 919 567 84 0 31 chr3 43786466 43786564 -115813219 + (GGAA)n Simple_repeat Simple_repeat 2 96 0 4 919 1896 180 45 45 chr3 43786589 43786835 -115812948 + Lx3C LINE L1 6512 6764 -212 4 919 432 0 0 0 chr3 43786835 43786883 -115812900 + (CA)n Simple_repeat Simple_repeat 2 49 0 4 919 1896 180 45 45 chr3 43786883 43787101 -115812682 + Lx3C LINE L1 6765 6976 0 4 919 279 0 0 0 chr3 43787144 43787175 -115812608 + (A)n Simple_repeat Simple_repeat 1 31 0 4 919 8475 127 25 10 chr3 43787175 43789594 -115810189 + Lx3A LINE L1 4522 6981 0 4 919 558 0 0 0 chr3 43789599 43789661 -115810122 + (TAGA)n Simple_repeat Simple_repeat 1 62 0 4 919 644 0 13 0 chr3 43789676 43789752 -115810031 + (TCTA)n Simple_repeat Simple_repeat 3 79 0 4 919 3542 197 44 44 chr3 43789766 43790337 -115809446 - RLTR25A LTR ERVK 0 1103 521 4 919 224 30 0 29 chr3 43790337 43790371 -115809412 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 4 919 3542 197 44 44 chr3 43790371 43790396 -115809387 - RLTR25A LTR ERVK -583 520 504 4 919 528 45 0 0 chr3 43790396 43790463 -115809320 + (GAAAA)n Simple_repeat Simple_repeat 4 70 0 4 919 3542 197 44 44 chr3 43790463 43790681 -115809102 - RLTR25A LTR ERVK -600 503 288 4 919 3758 112 23 5 chr3 43790683 43791257 -115808526 + Lx3_Mus LINE L1 6025 6608 -401 4 919 435 222 40 0 chr3 43791257 43791356 -115808427 - RLTR25A LTR ERVK -1000 103 1 4 919 23 86 0 0 chr3 43791947 43792005 -115807778 + AT_rich Low_complexity Low_complexity 1 58 0 4 919 336 326 52 1 chr3 43792029 43792180 -115807603 - MLT2D LTR ERVL -358 157 1 4 919 242 344 79 16 chr3 43792599 43792726 -115807057 + B4 SINE B4 153 287 -5 4 919 24 0 0 0 chr3 43793811 43793835 -115805948 + AT_rich Low_complexity Low_complexity 1 24 0 4 919 21 36 0 0 chr3 43793860 43793888 -115805895 + AT_rich Low_complexity Low_complexity 1 28 0 4 919 24 77 0 0 chr3 43794101 43794153 -115805630 + AT_rich Low_complexity Low_complexity 1 52 0 4 919 14256 127 35 4 chr3 43794425 43796855 -115802928 + Lx3A LINE L1 2460 4965 -921 4 919 7125 157 51 9 chr3 43796855 43798117 -115801666 + Lx3A LINE L1 5663 6976 -5 4 919 251 372 59 46 chr3 43798266 43798503 -115801280 - MTD LTR MaLR -179 240 1 4 919 1616 277 44 18 chr3 43798860 43799357 -115800426 + RLTR11A2 LTR ERVK 1 510 -17 4 919 669 170 0 0 chr3 43799713 43799878 -115799905 + GA-rich Low_complexity Low_complexity 1 165 0 4 919 21 36 0 0 chr3 43800046 43800074 -115799709 + AT_rich Low_complexity Low_complexity 1 28 0 4 919 3282 92 36 0 chr3 43800074 43800542 -115799241 - L1_Mus3 LINE L1 -8 6630 6146 4 919 1086 98 0 0 chr3 43800541 43800684 -115799099 + L1_Mus3 LINE L1 6341 6483 -155 4 919 2739 95 165 2 chr3 43800672 43801115 -115798668 - L1_Mus3 LINE L1 -473 6165 5651 4 919 426 139 0 0 chr3 43803090 43803162 -115796621 + (GGAGA)n Simple_repeat Simple_repeat 2 73 0 4 919 1254 67 0 0 chr3 43803162 43803340 -115796443 + (GAAAA)n Simple_repeat Simple_repeat 1 178 0 4 919 306 0 0 0 chr3 43804254 43804288 -115795495 + (T)n Simple_repeat Simple_repeat 1 34 0 4 919 23 78 0 0 chr3 43804985 43805036 -115794747 + AT_rich Low_complexity Low_complexity 1 51 0 4 919 31 44 0 0 chr3 43805282 43805327 -115794456 + AT_rich Low_complexity Low_complexity 1 45 0 4 919 743 32 11 0 chr3 43806436 43806530 -115793253 + (TCTA)n Simple_repeat Simple_repeat 3 97 0 4 919 845 333 51 18 chr3 43806552 43806888 -115792895 + ORR1E LTR MaLR 3 349 -10 4 919 1441 64 50 0 chr3 43807193 43807395 -115792388 + L1_Mus1 LINE L1 6355 6566 -1 4 919 33 25 0 0 chr3 43807525 43807565 -115792218 + AT_rich Low_complexity Low_complexity 1 40 0 4 919 1903 295 44 70 chr3 43807601 43807986 -115791797 - Lx5 LINE L1 -36 7014 6643 4 919 207 0 0 0 chr3 43807986 43808009 -115791774 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 4 919 836 103 14 0 chr3 43808016 43808162 -115791621 + (TCTTG)n Simple_repeat Simple_repeat 3 150 0 4 919 1903 295 44 70 chr3 43808162 43808520 -115791263 - Lx5 LINE L1 -408 6642 6283 4 919 10050 3 0 0 chr3 43808542 43810362 -115789421 - L1Md_A LINE L1 0 6582 4763 4 919 31278 6 0 1 chr3 43810337 43814709 -115785074 + L1Md_A LINE L1 417 4786 -1097 4 919 27 0 0 0 chr3 43814709 43814736 -115785047 + AT_rich Low_complexity Low_complexity 1 27 0 4 919 4418 48 0 0 chr3 43814772 43815313 -115784470 - L1Md_T LINE L1 0 6582 6042 4 919 2362 254 63 19 chr3 43815316 43815966 -115783817 - Lx5 LINE L1 -777 6273 5595 4 919 270 228 39 205 chr3 43816019 43816044 -115783739 - RMER20B LTR ERVK -392 235 216 4 919 913 58 28 21 chr3 43816044 43816186 -115783597 - L1Md_F3 LINE L1 -3 6581 6439 4 919 270 228 39 205 chr3 43816186 43816287 -115783496 - RMER20B LTR ERVK -412 215 130 4 919 401 0 0 20 chr3 43816351 43816401 -115783382 + (TG)n Simple_repeat Simple_repeat 1 49 0 4 919 480 245 43 87 chr3 43816428 43816589 -115783194 - RMER20B LTR ERVK -473 154 1 4 919 309 68 0 0 chr3 43817117 43817161 -115782622 + (CCA)n Simple_repeat Simple_repeat 1 44 0 4 919 231 204 0 0 chr3 43817351 43817405 -115782378 + (TAGA)n Simple_repeat Simple_repeat 4 57 0 4 919 24 0 0 0 chr3 43817550 43817574 -115782209 + AT_rich Low_complexity Low_complexity 1 24 0 4 919 334 324 48 70 chr3 43817798 43817984 -115781799 - B3 SINE B2 -34 182 1 4 919 267 216 143 10 chr3 43818352 43818450 -115781333 - Lx9 LINE L1 -22 7622 7512 4 919 633 196 58 19 chr3 43818457 43818613 -115781170 + Lx9 LINE L1 7311 7472 -172 4 919 246 164 0 0 chr3 43819010 43819065 -115780718 + (CATA)n Simple_repeat Simple_repeat 1 55 0 4 919 423 0 0 0 chr3 43819177 43819224 -115780559 + (TG)n Simple_repeat Simple_repeat 1 47 0 4 919 566 206 42 0 chr3 43819606 43819771 -115780012 + CT-rich Low_complexity Low_complexity 2 173 0 4 919 2164 281 139 13 chr3 43820019 43820837 -115778946 - Lx6 LINE L1 -56 7404 6292 4 919 23 0 0 0 chr3 43821110 43821133 -115778650 + AT_rich Low_complexity Low_complexity 1 23 0 4 919 16461 135 80 90 chr3 43821150 43826083 -115773700 + L1Md_F2 LINE L1 358 5586 -297 4 919 8888 10 0 0 chr3 43826083 43827079 -115772704 + L1Md_T LINE L1 5587 6582 0 4 919 16461 84 30 35 chr3 43827079 43828272 -115771511 + L1Md_F2 LINE L1 5587 6422 -160 4 919 26429 62 18 3 chr3 43828272 43833554 -115766229 + L1Md_A LINE L1 416 5934 -648 4 919 1371 90 0 15 chr3 43833554 43833757 -115766026 + L1Md_A LINE L1 6373 6572 -10 4 919 986 108 7 0 chr3 43835024 43835163 -115764620 - B1_Mus1 SINE Alu -8 140 1 4 919 5504 80 34 5 chr3 43835173 43835944 -115763839 - L1Md_F2 LINE L1 0 6582 5790 4 919 385 124 30 20 chr3 43836466 43836565 -115763218 + (TA)n Simple_repeat Simple_repeat 1 100 0 4 919 224 204 0 0 chr3 43836567 43836611 -115763172 + (TG)n Simple_repeat Simple_repeat 1 44 0 4 919 186 43 0 0 chr3 43836867 43836890 -115762893 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 4 919 672 325 120 6 chr3 43837150 43837484 -115762299 - MTE2b LTR MaLR -7 372 1 4 919 706 230 0 41 chr3 43838263 43838408 -115761375 + B1_Mur4 SINE Alu 1 139 -11 4 919 2091 218 75 78 chr3 43838641 43839218 -115760565 - RMER15 LTR ERVL 0 575 1 4 919 184 263 33 50 chr3 43839401 43839461 -115760322 + L2 LINE L2 2341 2399 -1020 4 919 372 22 0 0 chr3 43840385 43840430 -115759353 + (TG)n Simple_repeat Simple_repeat 2 46 0 4 919 2446 75 45 12 chr3 43840771 43841106 -115758677 + ORR1A1 LTR MaLR 1 346 0 4 919 1031 183 101 22 chr3 43841356 43841624 -115758159 - RMER6C LTR ERVK -8 682 394 4 919 1024 238 98 0 chr3 43841629 43841936 -115757847 + RMER6-int LTR ERVK 1847 2183 -994 4 919 3105 171 119 75 chr3 43841949 43842193 -115757590 + RMER6-int LTR ERVK 2275 2547 -630 4 919 336 210 0 0 chr3 43842193 43842255 -115757528 + LSU-rRNA_Hsa rRNA rRNA 1776 1837 -3198 4 919 3105 171 119 75 chr3 43842255 43842814 -115756969 + RMER6-int LTR ERVK 2548 3177 0 4 919 867 238 35 48 chr3 43842816 43843046 -115756737 + RMER6C LTR ERVK 3 229 -461 4 919 822 37 18 18 chr3 43843021 43843132 -115756651 + B1_Mus1 SINE Alu 28 138 -10 4 919 1658 183 68 87 chr3 43843166 43843662 -115756121 + RMER6C LTR ERVK 204 690 0 4 919 213 234 0 0 chr3 43844063 43844110 -115755673 + (CATATA)n Simple_repeat Simple_repeat 3 49 0 4 919 1110 82 0 0 chr3 43844328 43844475 -115755308 - B1_Mus2 SINE Alu 0 147 1 4 919 22 35 0 0 chr3 43844489 43844518 -115755265 + AT_rich Low_complexity Low_complexity 1 29 0 4 919 241 335 63 11 chr3 43844667 43844857 -115754926 + L1_Mur2 LINE L1 362 561 -7167 4 919 492 286 12 18 chr3 43844851 43845022 -115754761 + L1_Mur2 LINE L1 859 1028 -6700 4 919 942 343 26 46 chr3 43845013 43845404 -115754379 - Lx5 LINE L1 -132 6918 6536 4 919 207 152 0 0 chr3 43845424 43845470 -115754313 + A-rich Low_complexity Low_complexity 1 46 0 4 919 2908 225 54 17 chr3 43845562 43845918 -115753865 + L1_Mur2 LINE L1 1005 1421 -4459 4 919 495 0 0 0 chr3 43845918 43845973 -115753810 + (TA)n Simple_repeat Simple_repeat 1 55 0 4 919 2908 207 70 13 chr3 43845973 43846592 -115753191 + L1_Mur2 LINE L1 1422 2075 -3805 4 919 180 77 0 0 chr3 43846592 43846618 -115753165 + (CCCCCA)n Simple_repeat Simple_repeat 5 30 0 4 919 29 60 0 0 chr3 43847263 43847313 -115752470 + AT_rich Low_complexity Low_complexity 1 50 0 5 919 438 0 0 18 chr3 43847563 43847619 -115752164 + B1_Mus2 SINE Alu 84 138 -9 5 919 207 0 0 0 chr3 43847619 43847642 -115752141 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 5 919 5397 68 3 4 chr3 43847712 43848421 -115751362 + L1Md_F2 LINE L1 4878 5585 -298 5 919 7919 54 0 0 chr3 43848422 43849401 -115750382 + L1Md_F2 LINE L1 5587 6565 -17 5 919 486 61 0 0 chr3 43849403 43849469 -115750314 + (CATA)n Simple_repeat Simple_repeat 2 67 0 5 919 222 118 0 0 chr3 43849877 43849911 -115749872 + (A)n Simple_repeat Simple_repeat 1 34 0 5 919 288 0 0 0 chr3 43849941 43849973 -115749810 + (TAAA)n Simple_repeat Simple_repeat 2 33 0 5 919 1654 275 84 6 chr3 43849982 43850515 -115749268 + Lx6 LINE L1 5972 6546 -914 5 919 523 324 53 5 chr3 43850514 43850722 -115749061 - Lx8 LINE L1 -361 7112 6895 5 919 221 163 0 20 chr3 43850990 43851040 -115748743 + (TA)n Simple_repeat Simple_repeat 2 50 0 5 919 300 27 0 0 chr3 43851049 43851086 -115748697 + (TG)n Simple_repeat Simple_repeat 2 38 0 5 919 609 360 28 25 chr3 43851622 43851907 -115747876 - B4A SINE B4 0 292 7 5 919 180 77 0 0 chr3 43852053 43852079 -115747704 + (TCTA)n Simple_repeat Simple_repeat 2 27 0 5 919 708 0 11 21 chr3 43852079 43852173 -115747610 + (GAGAA)n Simple_repeat Simple_repeat 3 95 0 5 919 345 214 70 23 chr3 43855484 43855570 -115744213 + MT2B LTR ERVL 175 264 -337 5 919 6455 29 0 0 chr3 43855570 43856335 -115743448 - L1_Mm LINE L1 -822 5061 4297 5 919 2853 42 6 3 chr3 43856335 43856692 -115743091 + L1Md_T LINE L1 6225 6582 0 5 919 22 35 0 0 chr3 43856767 43856796 -115742987 + AT_rich Low_complexity Low_complexity 1 29 0 5 919 965 99 0 0 chr3 43857727 43857858 -115741925 - B1_Mm SINE Alu -5 142 12 5 919 4134 40 46 4 chr3 43860517 43861043 -115738740 - L1Md_F3 LINE L1 -14 6570 6023 5 919 906 301 15 53 chr3 43862008 43862348 -115737435 - Lx7 LINE L1 -345 7351 7025 5 919 541 303 111 0 chr3 43862409 43862617 -115737166 + Lx6 LINE L1 7223 7453 -7 5 919 214 255 0 52 chr3 43862771 43862829 -115736954 + polypurine Low_complexity Low_complexity 4 58 0 5 919 3067 74 5 0 chr3 43863129 43863523 -115736260 - MTA_Mm LTR MaLR 0 396 1 5 919 360 0 0 0 chr3 43863666 43863706 -115736077 + (CA)n Simple_repeat Simple_repeat 1 40 0 5 919 630 37 0 0 chr3 43863706 43863786 -115735997 + (GA)n Simple_repeat Simple_repeat 2 82 0 5 919 229 316 189 0 chr3 43863787 43863882 -115735901 + RSINE1 SINE B4 5 117 -48 5 919 234 150 0 0 chr3 43863951 43863991 -115735792 + (TAAA)n Simple_repeat Simple_repeat 2 41 0 5 919 228 35 0 0 chr3 43864176 43864205 -115735578 + (CA)n Simple_repeat Simple_repeat 2 30 0 5 919 621 0 0 0 chr3 43864206 43864275 -115735508 + (GA)n Simple_repeat Simple_repeat 2 70 0 5 919 636 77 0 0 chr3 43864370 43864461 -115735322 + (TG)n Simple_repeat Simple_repeat 2 92 0 5 919 461 381 7 1 chr3 43864463 43864639 -115735144 - B3A SINE B2 -38 178 3 5 919 630 307 132 28 chr3 43865466 43865685 -115734098 + L1MA6 LINE L1 4584 4828 -1315 5 919 459 35 0 0 chr3 43865685 43865742 -115734041 + (CA)n Simple_repeat Simple_repeat 2 58 0 5 919 630 307 132 28 chr3 43865742 43866249 -115733534 + L1MA6 LINE L1 4829 5386 -757 5 919 406 301 72 19 chr3 43866335 43866454 -115733329 - Lx9 LINE L1 -229 7415 7293 5 919 236 30 30 0 chr3 43866454 43866487 -115733296 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 5 919 406 301 72 19 chr3 43866487 43866574 -115733209 - Lx9 LINE L1 -352 7292 7198 5 919 413 200 0 9 chr3 43866574 43866680 -115733103 + Lx9 LINE L1 7531 7635 -9 5 919 262 331 66 6 chr3 43866938 43867120 -115732663 + L1MA6 LINE L1 5746 5938 -362 5 919 232 368 17 8 chr3 43867611 43867729 -115732054 + MLT1F LTR MaLR 359 477 -71 5 919 23 0 0 0 chr3 43867965 43867988 -115731795 + AT_rich Low_complexity Low_complexity 1 23 0 5 919 189 74 0 0 chr3 43867989 43868016 -115731767 + (TTA)n Simple_repeat Simple_repeat 3 29 0 5 919 2085 190 12 5 chr3 43868017 43868429 -115731354 - MTC LTR MaLR -2 419 5 5 919 343 364 80 15 chr3 43869157 43869358 -115730425 + B4 SINE B4 10 223 -69 5 919 223 154 15 15 chr3 43869358 43869424 -115730359 + (CAA)n Simple_repeat Simple_repeat 1 66 0 5 919 355 67 0 0 chr3 43869460 43869505 -115730278 + HAL1-3A_ME LINE L1 1968 2012 -846 5 919 183 250 0 0 chr3 43869505 43869557 -115730226 + (CA)n Simple_repeat Simple_repeat 1 52 0 5 919 518 351 0 9 chr3 43869885 43870095 -115729688 + B3 SINE B2 1 208 -8 5 919 261 183 0 0 chr3 43870480 43870540 -115729243 + (TAAA)n Simple_repeat Simple_repeat 2 61 0 5 919 278 87 22 0 chr3 43871283 43871329 -115728454 + (TATG)n Simple_repeat Simple_repeat 2 48 0 5 919 928 246 40 52 chr3 43871535 43871882 -115727901 - RLTR15 LTR ERVK -16 343 1 5 919 1069 22 8 0 chr3 43871988 43872122 -115727661 + L1Md_F2 LINE L1 6434 6568 -14 5 919 22 0 0 0 chr3 43872122 43872144 -115727639 + AT_rich Low_complexity Low_complexity 1 22 0 5 919 718 347 58 18 chr3 43872572 43872965 -115726818 - RMER5 LTR ERV1 -14 520 112 5 919 260 361 61 10 chr3 43873312 43873410 -115726373 + RSINE1 SINE B4 43 145 -20 5 919 22 0 0 0 chr3 43873476 43873498 -115726285 + AT_rich Low_complexity Low_complexity 1 22 0 5 919 29 0 0 0 chr3 43873868 43873897 -115725886 + AT_rich Low_complexity Low_complexity 1 29 0 5 919 4834 190 18 18 chr3 43874637 43875597 -115724186 + Lx4B LINE L1 6049 7008 -50 5 919 277 211 56 0 chr3 43875616 43875687 -115724096 + Lx9 LINE L1 7570 7644 0 5 919 1734 266 91 26 chr3 43875709 43876280 -115723503 + RMER1C Other Other 558 1165 -177 5 919 666 0 0 0 chr3 43876323 43876397 -115723386 + (TTCC)n Simple_repeat Simple_repeat 3 76 0 5 919 241 309 24 0 chr3 43876422 43876506 -115723277 + CT-rich Low_complexity Low_complexity 1 86 0 5 919 402 293 20 54 chr3 43876507 43876655 -115723128 + RMER1C Other Other 1198 1340 -2 5 919 22 35 0 0 chr3 43877062 43877091 -115722692 + AT_rich Low_complexity Low_complexity 1 29 0 5 919 990 294 5 124 chr3 43877443 43877854 -115721929 + ORR1D2 LTR MaLR 1 362 -8 5 919 993 334 30 30 chr3 43878252 43878609 -115721174 + MTEa LTR MaLR 18 359 -11 5 919 334 301 0 0 chr3 43878855 43878948 -115720835 + (CA)n Simple_repeat Simple_repeat 1 93 0 5 919 590 342 46 114 chr3 43879812 43880206 -115719577 - ORR1E LTR MaLR 0 370 4 5 919 272 288 101 67 chr3 43880678 43880857 -115718926 - L2b LINE L2 -233 3142 2958 5 919 2666 90 26 5 chr3 43881223 43881601 -115718182 + L1Md_F2 LINE L1 6194 6579 -3 5 919 5738 80 1 6 chr3 43881743 43882524 -115717259 - L1Md_F2 LINE L1 -1 6581 5805 5 919 188 294 114 29 chr3 43882708 43882778 -115717005 - L4 LINE RTE -1504 525 450 5 919 3651 42 2 19 chr3 43883336 43883797 -115715986 - L1Md_F3 LINE L1 -1 6583 6131 5 919 31194 39 0 2 chr3 43884178 43889816 -115709967 + L1Md_T LINE L1 1 5589 -297 5 919 8465 31 0 0 chr3 43889816 43890838 -115708945 + L1Md_T LINE L1 5590 6585 0 5 919 487 351 10 46 chr3 43891334 43891528 -115708255 + B3 SINE B2 1 187 -29 5 919 872 131 8 0 chr3 43891779 43891909 -115707874 + L1VL4 LINE L1 154 284 -6018 5 919 4815 22 0 0 chr3 43891911 43892457 -115707326 + MERVL-int LTR ERVL 3901 4446 -1039 5 919 1124 132 0 117 chr3 43892468 43892691 -115707092 + L1VL4 LINE L1 107 303 -5999 5 919 9313 94 29 10 chr3 43892692 43894525 -115705258 + MusHAL1 LINE L1 744 2708 -4 5 919 1021 315 53 20 chr3 43895348 43895704 -115704079 - MTD LTR MaLR -24 395 28 5 919 273 324 0 0 chr3 43896833 43896901 -115702882 + LTR82B Low_complexity ERVL 654 721 -109 5 919 324 333 17 28 chr3 43897365 43897544 -115702239 + Lx9 LINE L1 7196 7372 -272 5 919 777 157 0 17 chr3 43897604 43897779 -115702004 + GA-rich Low_complexity Low_complexity 3 174 0 5 919 27 49 0 0 chr3 43897894 43897935 -115701848 + AT_rich Low_complexity Low_complexity 1 41 0 5 919 202 348 11 11 chr3 43898222 43898315 -115701468 + CT-rich Low_complexity Low_complexity 3 95 0 5 919 21 0 0 0 chr3 43898456 43898477 -115701306 + AT_rich Low_complexity Low_complexity 1 21 0 5 919 2159 161 42 21 chr3 43898702 43899134 -115700649 + Lx3A LINE L1 6541 6981 0 5 919 1855 77 2 1 chr3 43899314 43899555 -115700228 - L1_Mus1 LINE L1 -222 6345 6126 5 919 1653 97 0 0 chr3 43899555 43899832 -115699951 + L1_Mus1 LINE L1 6338 6567 0 5 919 781 89 19 25 chr3 43900429 43900590 -115699193 + (TCTA)n Simple_repeat Simple_repeat 4 163 0 5 919 336 102 0 0 chr3 43900668 43900717 -115699066 + (TCTA)n Simple_repeat Simple_repeat 4 52 0 5 919 480 32 0 0 chr3 43900723 43900786 -115698997 - L1Md_F3 LINE L1 -17 6567 6505 5 919 349 87 14 42 chr3 43900793 43900865 -115698918 + (TCTA)n Simple_repeat Simple_repeat 3 72 0 5 919 493 323 53 67 chr3 43901455 43901737 -115698046 - MTEa LTR MaLR 0 379 102 5 919 1134 82 0 0 chr3 43903028 43903174 -115696609 + B1_Mm SINE Alu 2 147 0 5 114 35398 36 1 1 chr3 43903178 43909247 -115690536 + L1Md_T LINE L1 1 5589 -297 5 920 8960 6 0 0 chr3 43909247 43910267 -115689516 + L1Md_T LINE L1 5590 6585 0 5 920 496 345 81 58 chr3 43910290 43910637 -115689146 + MLT1B LTR MaLR 24 378 -12 5 920 306 0 0 0 chr3 43910751 43910785 -115688998 + (A)n Simple_repeat Simple_repeat 1 34 0 5 920 1807 183 3 25 chr3 43910941 43911305 -115688478 - Lx2 LINE L1 -646 6351 5996 5 920 628 208 7 13 chr3 43911305 43911456 -115688327 + Lx2 LINE L1 6837 6986 -11 5 920 279 0 0 0 chr3 43911828 43911859 -115687924 + (CA)n Simple_repeat Simple_repeat 2 32 0 5 920 325 357 72 34 chr3 43911859 43912094 -115687689 + Lx8 LINE L1 7112 7355 -118 5 920 2859 244 137 28 chr3 43912376 43913431 -115686352 - Lx5 LINE L1 0 7050 5881 5 920 6591 147 27 5 chr3 43913435 43914862 -115684921 + Lx LINE L1 5176 6624 -30 5 920 458 32 0 31 chr3 43914864 43914929 -115684854 + (TAAAA)n Simple_repeat Simple_repeat 3 65 0 6 920 10933 201 106 68 chr3 43914935 43916922 -115682861 - Lx5 LINE L1 0 5877 3988 5 920 1655 151 120 32 chr3 43916922 43917298 -115682485 + RLTR9E LTR ERVK 1 409 0 6 920 10933 201 106 68 chr3 43917298 43917473 -115682310 - Lx5 LINE L1 -1890 3987 3820 5 920 3973 54 20 12 chr3 43917473 43917981 -115681802 - LTRIS3 LTR ERV1 0 512 1 6 920 10933 201 106 68 chr3 43917981 43919221 -115680562 - Lx5 LINE L1 -2058 3819 2343 5 920 892 223 19 23 chr3 43919218 43919544 -115680239 - Lx5 LINE L1 -6435 1293 899 5 920 606 63 0 0 chr3 43921520 43921599 -115678184 + (TG)n Simple_repeat Simple_repeat 1 79 0 6 920 246 200 15 44 chr3 43921629 43921697 -115678086 + (TATATG)n Simple_repeat Simple_repeat 4 69 0 6 920 540 200 47 27 chr3 43921861 43922010 -115677773 - B4A SINE B4 -139 153 2 6 920 1026 102 0 0 chr3 43922285 43922422 -115677361 - B1_Mus2 SINE Alu -10 137 1 6 920 23 33 0 0 chr3 43922512 43922542 -115677241 + AT_rich Low_complexity Low_complexity 1 30 0 6 920 3502 107 0 6 chr3 43923390 43923888 -115675895 - Lx LINE L1 -251 6403 5909 6 920 308 324 53 13 chr3 43923894 43924044 -115675739 - L1MC LINE L1 -2588 3558 3403 6 920 429 234 40 51 chr3 43924430 43924606 -115675177 + Lx8 LINE L1 5777 5950 -1523 6 920 473 335 36 31 chr3 43924827 43925052 -115674731 + Lx8 LINE L1 6255 6480 -993 6 920 342 354 70 70 chr3 43925053 43925266 -115674517 + RMER1C Other Other 606 818 -524 6 920 183 42 0 0 chr3 43925266 43925290 -115674493 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 6 920 1248 143 8 25 chr3 43925345 43925588 -115674195 - L1_Mus4 LINE L1 -8 6628 6390 6 920 733 103 9 0 chr3 43925588 43925704 -115674079 + L1_Mus4 LINE L1 6257 6373 -263 6 920 1058 294 31 15 chr3 43925731 43926056 -115673727 + RMER1C Other Other 846 1175 -167 6 920 497 193 67 0 chr3 43927273 43927440 -115672343 - Lx9 LINE L1 -43 7601 7382 6 920 407 322 89 11 chr3 43927438 43927617 -115672166 + Lx9 LINE L1 7169 7361 -283 6 920 291 76 76 0 chr3 43927904 43927970 -115671813 + T-rich Low_complexity Low_complexity 2 72 0 6 920 2306 240 89 45 chr3 43928851 43929593 -115670190 + Lx7 LINE L1 6764 7538 -158 6 920 25 31 0 0 chr3 43929732 43929764 -115670019 + AT_rich Low_complexity Low_complexity 1 32 0 6 920 26 64 0 0 chr3 43930096 43930143 -115669640 + AT_rich Low_complexity Low_complexity 1 47 0 6 920 272 27 0 26 chr3 43930576 43930614 -115669169 + (CAAAA)n Simple_repeat Simple_repeat 4 40 0 6 920 229 291 12 60 chr3 43931809 43931893 -115667890 - ID4_ SINE ID -1 82 3 6 920 546 327 40 48 chr3 43931957 43932341 -115667442 + MER67C LTR ERV1 4 411 -300 6 920 276 204 0 41 chr3 43932708 43932876 -115666907 + (TA)n Simple_repeat Simple_repeat 1 161 0 6 920 278 403 36 22 chr3 43933212 43933349 -115666434 + ID_B1 SINE B4 83 221 -3 6 920 21 36 0 0 chr3 43934382 43934410 -115665373 + AT_rich Low_complexity Low_complexity 1 28 0 6 920 351 0 0 0 chr3 43935087 43935126 -115664657 + (TA)n Simple_repeat Simple_repeat 1 39 0 6 920 195 42 0 0 chr3 43935389 43935413 -115664370 + (CTG)n Simple_repeat Simple_repeat 1 24 0 6 920 996 278 99 16 chr3 43935448 43935852 -115663931 + Lx6 LINE L1 334 738 -6990 6 920 4697 262 78 33 chr3 43935853 43936134 -115663649 + Lx6 LINE L1 5648 5951 -1509 6 920 737 152 21 0 chr3 43936134 43936279 -115663504 + L1_Mus3 LINE L1 6489 6636 -2 6 920 4697 262 78 33 chr3 43936279 43937528 -115662255 + Lx6 LINE L1 5952 7247 -213 6 920 1264 103 0 0 chr3 43937560 43937745 -115662038 - MTB LTR MaLR -54 346 162 6 920 1608 236 65 28 chr3 43937934 43938331 -115661452 + MTC LTR MaLR 6 417 -4 6 920 473 326 56 6 chr3 43938644 43938823 -115660960 + Tigger5 DNA MER2_type 40 227 -2179 6 920 36 53 0 0 chr3 43938910 43938967 -115660816 + AT_rich Low_complexity Low_complexity 1 57 0 6 920 510 17 0 0 chr3 43939356 43939415 -115660368 + (GAAA)n Simple_repeat Simple_repeat 2 60 0 6 920 948 178 0 0 chr3 43939416 43939596 -115660187 + GA-rich Low_complexity Low_complexity 1 180 0 6 920 954 111 0 13 chr3 43939988 43940143 -115659640 + L1Md_F2 LINE L1 6430 6582 0 6 920 24 0 0 0 chr3 43940189 43940213 -115659570 + AT_rich Low_complexity Low_complexity 1 24 0 6 920 1516 204 80 3 chr3 43940213 43940527 -115659256 - ORR1B2 LTR MaLR 0 367 30 6 920 2252 291 67 43 chr3 43940540 43940832 -115658951 - Lx6 LINE L1 -26 7434 7149 6 920 1005 116 82 43 chr3 43940832 43941074 -115658709 + L1_Mus3 LINE L1 6413 6638 0 6 920 2252 302 67 71 chr3 43941074 43941903 -115657880 - Lx6 LINE L1 -312 7148 6040 6 920 4690 58 2 0 chr3 43941903 43942491 -115657292 - L1Md_F2 LINE L1 -12 6570 5982 6 920 862 330 69 145 chr3 43942491 43942764 -115657019 - Lx6 LINE L1 -1011 6039 5760 6 920 8406 228 48 72 chr3 43942821 43943753 -115656030 - Lx6 LINE L1 -693 5187 4275 6 920 977 143 0 0 chr3 43943753 43943900 -115655883 - B1_Mus1 SINE Alu -1 147 1 6 920 8406 228 48 72 chr3 43943900 43944804 -115654979 - Lx6 LINE L1 -1606 4274 3345 6 920 788 92 8 0 chr3 43944804 43944923 -115654860 + (TTCTCC)n Simple_repeat Simple_repeat 3 122 0 6 920 8406 228 48 72 chr3 43944923 43945899 -115653884 - Lx6 LINE L1 -2536 3344 2444 6 920 35635 65 4 2 chr3 43945898 43951973 -115647810 + L1Md_F3 LINE L1 467 6553 -31 6 920 398 20 20 0 chr3 43951973 43952024 -115647759 + (TA)n Simple_repeat Simple_repeat 2 53 0 6 920 771 224 94 26 chr3 43952024 43952049 -115647734 + L1_Mus3 LINE L1 6614 6638 0 6 920 3058 244 41 89 chr3 43952072 43953746 -115646037 - Lx6 LINE L1 -3436 2444 863 6 920 477 259 65 72 chr3 43954537 43954774 -115645009 + B4A SINE B4 7 284 -8 6 920 241 246 0 28 chr3 43954783 43954854 -115644929 + (CATA)n Simple_repeat Simple_repeat 2 70 0 6 920 1274 79 9 21 chr3 43954875 43955202 -115644581 + (CA)n Simple_repeat Simple_repeat 1 323 0 6 920 543 323 86 27 chr3 43956904 43957241 -115642542 + L1MDa LINE L1 893 1249 -5384 6 920 314 394 0 8 chr3 43957745 43957878 -115641905 + RSINE1 SINE B4 17 148 -17 6 920 21 36 0 0 chr3 43958837 43958865 -115640918 + AT_rich Low_complexity Low_complexity 1 28 0 6 920 5160 48 2 5 chr3 43960492 43961123 -115638660 - L1Md_F2 LINE L1 -169 6413 5785 6 920 1355 122 0 9 chr3 43961123 43961338 -115638445 + L1Md_F2 LINE L1 6357 6569 -13 6 920 2149 134 191 2 chr3 43961490 43961931 -115637852 + L1_Mur2 LINE L1 4831 5354 -523 6 920 802 157 27 27 chr3 43961931 43962114 -115637669 + Lx LINE L1 6471 6653 -1 6 920 444 300 54 48 chr3 43962353 43962500 -115637283 - B1F1 SINE Alu -1 148 1 6 920 1276 202 8 0 chr3 43962757 43963005 -115636778 + L1_Mur2 LINE L1 5349 5598 -279 6 920 22 0 0 0 chr3 43963043 43963065 -115636718 + AT_rich Low_complexity Low_complexity 1 22 0 6 920 247 319 54 33 chr3 43963798 43964132 -115635651 + RMER17D2 LTR ERVK 301 641 -168 6 920 1491 157 40 0 chr3 43964133 43964381 -115635402 - L1_Mus4 LINE L1 -287 6349 6092 6 920 4066 161 11 4 chr3 43964358 43965096 -115634687 - L1_Mur2 LINE L1 -1061 4816 4074 6 920 770 297 79 30 chr3 43965111 43965378 -115634405 + ORR1D-int LTR MaLR 666 945 -425 6 920 266 325 92 25 chr3 43965594 43965714 -115634069 + RSINE1 SINE B4 2 129 -36 6 920 225 0 0 0 chr3 43965724 43965749 -115634034 + (TC)n Simple_repeat Simple_repeat 1 25 0 6 920 318 87 0 0 chr3 43965749 43965794 -115633989 + (CA)n Simple_repeat Simple_repeat 1 46 0 6 920 483 18 0 0 chr3 43965797 43965853 -115633930 + (TA)n Simple_repeat Simple_repeat 2 57 0 6 920 237 65 0 0 chr3 43966382 43966413 -115633370 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 6 920 1213 302 45 14 chr3 43967342 43967836 -115631947 - Lx9 LINE L1 -610 7034 6526 6 920 8208 39 3 1 chr3 43968355 43969379 -115630404 - L1Md_F2 LINE L1 -12 6570 5545 6 920 29891 106 19 33 chr3 43969581 43975849 -115623934 - L1Md_F2 LINE L1 0 6582 416 6 920 632 205 53 19 chr3 43975947 43976156 -115623627 - L1_Mur2 LINE L1 -5856 856 641 6 920 2188 203 9 0 chr3 43976158 43976582 -115623201 + Lx5 LINE L1 5649 6076 -974 6 920 395 256 91 36 chr3 43976602 43976757 -115623026 - ORR1D2 LTR MaLR -172 187 13 6 920 2604 314 53 66 chr3 43976759 43977294 -115622489 - ORR1D2-int LTR MaLR -4 1366 822 6 920 5743 134 19 13 chr3 43977294 43978269 -115621514 + Lx3A LINE L1 5990 6970 -11 6 920 363 44 0 0 chr3 43978271 43978316 -115621467 + (TAA)n Simple_repeat Simple_repeat 1 45 0 6 920 2604 314 53 66 chr3 43978316 43979097 -115620686 - ORR1D2-int LTR MaLR -549 821 54 6 920 390 57 0 0 chr3 43979097 43979150 -115620633 + (CA)n Simple_repeat Simple_repeat 2 54 0 6 920 2604 314 53 66 chr3 43979150 43979212 -115620571 - ORR1D2-int LTR MaLR -1317 53 1 6 920 1339 233 35 30 chr3 43979212 43979579 -115620204 - ORR1D2 LTR MaLR 0 370 2 6 920 1271 245 23 20 chr3 43980017 43980321 -115619462 - RLTR18B LTR ERVK -6 506 202 6 920 318 218 101 22 chr3 43980371 43980460 -115619323 - RLTR18B LTR ERVK -281 231 136 6 920 24 0 0 0 chr3 43980682 43980706 -115619077 + AT_rich Low_complexity Low_complexity 1 24 0 6 920 31823 105 16 8 chr3 43980708 43986841 -115612942 - L1Md_F2 LINE L1 -12 6570 387 6 920 23 33 0 0 chr3 43987859 43987889 -115611894 + AT_rich Low_complexity Low_complexity 1 30 0 6 920 4481 115 54 0 chr3 43988472 43989179 -115610604 - L1_Mus3 LINE L1 0 6638 5894 6 920 2640 167 4 2 chr3 43989179 43989640 -115610143 + L1_Mus3 LINE L1 5422 5883 0 6 920 37756 52 0 3 chr3 43989807 43996703 -115603080 - L1Md_T LINE L1 0 6585 1 6 920 249 217 0 0 chr3 43996869 43996929 -115602854 - L1M2 LINE L1 -4831 2018 1959 6 920 7374 86 9 5 chr3 43996963 43998645 -115601138 - L1Md_F2 LINE L1 0 6582 4894 6 920 2080 88 33 17 chr3 43998645 43998947 -115600836 + IAPLTR2b LTR ERVK 1 307 -20 6 920 1952 132 9 24 chr3 43998963 43999357 -115600426 + IAPEY3-int LTR ERVK 21 578 -5903 6 920 3053 100 5 0 chr3 43999354 43999765 -115600018 + IAPEY3-int LTR ERVK 1570 1982 -5698 6 920 1934 79 8 0 chr3 43999745 43999999 -115599784 + IAPEY3-int LTR ERVK 2242 2497 -5183 6 920 7895 226 20 24 chr3 44000019 44001901 -115597882 + IAPLTR3-int LTR ERVK 4929 6801 -20 1 920 1977 114 26 16 chr3 44001901 44002205 -115597578 + IAPLTR2b LTR ERVK 1 307 -20 1 920 25932 99 6 8 chr3 44002222 44006700 -115593083 - L1Md_A LINE L1 -984 4899 217 2 920 321 231 13 40 chr3 44007059 44007208 -115592575 + (TCTA)n Simple_repeat Simple_repeat 4 148 0 3 920 430 347 75 4 chr3 44007341 44007607 -115592176 + B4A SINE B4 2 286 -6 4 920 456 51 0 0 chr3 44007633 44007692 -115592091 + (CA)n Simple_repeat Simple_repeat 1 59 0 5 920 25 31 0 0 chr3 44007775 44007807 -115591976 + AT_rich Low_complexity Low_complexity 1 32 0 6 920 25 0 0 0 chr3 44008882 44008907 -115590876 + AT_rich Low_complexity Low_complexity 1 25 0 7 920 24 0 0 0 chr3 44008958 44008982 -115590801 + AT_rich Low_complexity Low_complexity 1 24 0 8 920 276 120 0 0 chr3 44009427 44009477 -115590306 + (TG)n Simple_repeat Simple_repeat 2 51 0 9 920 224 394 61 34 chr3 44009502 44009649 -115590134 + RSINE1 SINE B4 4 154 -11 1 920 28 86 0 0 chr3 44010152 44010222 -115589561 + AT_rich Low_complexity Low_complexity 1 70 0 1 920 459 384 67 15 chr3 44010432 44010690 -115589093 + B4 SINE B4 2 274 -18 1 920 351 60 0 0 chr3 44010690 44010740 -115589043 + (TG)n Simple_repeat Simple_repeat 1 50 0 1 920 459 384 67 15 chr3 44010740 44010751 -115589032 + B4 SINE B4 275 285 -7 1 920 358 152 22 0 chr3 44010782 44010874 -115588909 + CT-rich Low_complexity Low_complexity 2 95 0 1 920 186 209 0 0 chr3 44010875 44010918 -115588865 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 920 312 182 18 0 chr3 44010971 44011026 -115588757 + RLTR10E LTR ERVK 1 56 -255 1 920 372 43 0 0 chr3 44011534 44011580 -115588203 + (TAAA)n Simple_repeat Simple_repeat 4 49 0 1 920 24 0 0 0 chr3 44012489 44012513 -115587270 + AT_rich Low_complexity Low_complexity 1 24 0 1 920 315 0 0 0 chr3 44013103 44013138 -115586645 + (CA)n Simple_repeat Simple_repeat 2 36 0 1 920 468 273 60 33 chr3 44013301 44013510 -115586273 + MER90a LTR ERV1 37 234 -380 2 920 351 0 0 0 chr3 44013958 44013997 -115585786 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 2 920 353 328 14 43 chr3 44014621 44014761 -115585022 - ID_B1 SINE B4 -1 223 88 2 920 249 309 74 11 chr3 44016042 44016137 -115583646 - MLT1D LTR MaLR -402 103 3 2 920 604 300 80 51 chr3 44016274 44016800 -115582983 + Lx8 LINE L1 6879 7458 -15 2 920 757 284 16 45 chr3 44017425 44017733 -115582050 + RLTR12B LTR ERVK 18 316 -252 2 920 443 294 42 31 chr3 44017748 44017941 -115581842 + RLTR12B LTR ERVK 291 485 -43 2 920 2941 167 48 48 chr3 44018187 44018576 -115581207 - Lx3B LINE L1 -6 6967 6575 2 920 1077 96 0 7 chr3 44018576 44018723 -115581060 + B1_Mus1 SINE Alu 2 147 -1 2 920 2941 167 48 48 chr3 44018723 44018944 -115580839 - Lx3B LINE L1 -399 6574 6357 2 920 1000 205 37 25 chr3 44019431 44019769 -115580014 + MYSERV6-int LTR ERVK 8641 8902 -57 2 920 810 279 41 131 chr3 44019792 44020223 -115579560 + RLTR12B LTR ERVK 42 424 -103 2 920 288 0 0 0 chr3 44020234 44020266 -115579517 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 3 920 23 0 0 0 chr3 44020615 44020638 -115579145 + AT_rich Low_complexity Low_complexity 1 23 0 3 920 432 169 31 47 chr3 44020800 44021008 -115578775 - RMER17B LTR ERVK -393 513 310 3 920 3928 136 2 13 chr3 44021264 44021638 -115578145 - L1_Mus4 LINE L1 -1 6635 6268 3 920 2884 67 33 138 chr3 44021638 44022125 -115577658 + RLTR10C LTR ERVK 1 436 0 3 920 3928 136 2 13 chr3 44022125 44022375 -115577408 - L1_Mus4 LINE L1 -369 6267 6018 3 920 4190 186 8 1 chr3 44022375 44023161 -115576622 + L1_Mm LINE L1 5006 5796 -87 3 920 1027 66 20 7 chr3 44023161 44023314 -115576469 + L1Md_F2 LINE L1 6428 6582 0 3 920 189 0 0 0 chr3 44023623 44023644 -115576139 + (T)n Simple_repeat Simple_repeat 1 21 0 3 920 482 320 73 22 chr3 44024445 44024624 -115575159 - B3A SINE B2 -5 193 6 3 920 26 30 0 0 chr3 44024659 44024692 -115575091 + AT_rich Low_complexity Low_complexity 1 33 0 3 920 211 216 0 0 chr3 44025998 44026049 -115573734 + T-rich Low_complexity Low_complexity 1 51 0 4 920 234 0 0 0 chr3 44026082 44026108 -115573675 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 4 920 478 294 27 27 chr3 44027878 44028025 -115571758 + B3A SINE B2 1 147 -51 4 920 201 39 0 0 chr3 44028060 44028086 -115571697 + (CA)n Simple_repeat Simple_repeat 1 26 0 4 920 28 0 0 0 chr3 44028086 44028114 -115571669 + AT_rich Low_complexity Low_complexity 1 28 0 4 920 12063 145 21 23 chr3 44028120 44031143 -115568640 - L1_Mus3 LINE L1 -5 6633 3620 4 920 584 273 62 19 chr3 44031231 44031440 -115568343 + RLTR45 LTR ERVK 265 482 0 4 920 21 57 0 0 chr3 44032066 44032101 -115567682 + AT_rich Low_complexity Low_complexity 1 35 0 4 920 365 368 64 91 chr3 44032878 44033174 -115566609 - B4A SINE B4 0 292 5 4 920 773 312 53 20 chr3 44033349 44033742 -115566041 + Lx9 LINE L1 7061 7466 -178 4 920 743 375 60 24 chr3 44034401 44034783 -115565000 + MTD LTR MaLR 24 419 0 5 920 443 211 63 83 chr3 44035030 44035168 -115564615 + MLT1D LTR MaLR 231 505 0 5 920 30 27 0 0 chr3 44035263 44035300 -115564483 + AT_rich Low_complexity Low_complexity 1 37 0 5 920 256 77 61 49 chr3 44035435 44035517 -115564266 + (CAAA)n Simple_repeat Simple_repeat 2 84 0 5 920 210 172 17 33 chr3 44035558 44035618 -115564165 + A-rich Low_complexity Low_complexity 5 63 0 5 920 362 221 120 0 chr3 44037376 44037534 -115562249 + Lx9 LINE L1 7461 7637 -7 5 920 1817 82 31 0 chr3 44037712 44037967 -115561816 - ORR1A1 LTR MaLR -8 338 76 5 920 195 162 0 0 chr3 44038045 44038082 -115561701 + A-rich Low_complexity Low_complexity 1 37 0 5 920 525 118 15 17 chr3 44038193 44038292 -115561491 - ORR1A1 LTR MaLR -282 112 2 5 920 185 333 0 43 chr3 44038320 44038389 -115561394 - L3 LINE CR1 -1137 3352 3287 5 921 652 305 48 70 chr3 44040232 44040588 -115559195 + RLTR11B LTR ERVK 4 351 -102 5 921 25 65 0 0 chr3 44040750 44040796 -115558987 + AT_rich Low_complexity Low_complexity 1 46 0 6 921 388 267 20 7 chr3 44040809 44040956 -115558827 + (TA)n Simple_repeat Simple_repeat 1 149 0 6 921 613 157 11 0 chr3 44041300 44041422 -115558361 + L1_Rod LINE L1 3472 3590 -324 6 921 2019 208 47 22 chr3 44041429 44041572 -115558211 - Lx3C LINE L1 -929 6047 5910 6 921 1261 200 54 40 chr3 44041572 44041926 -115557857 + RLTR10D LTR ERVK 1 359 0 6 921 2442 208 66 1 chr3 44041926 44042507 -115557276 - Lx3C LINE L1 -1067 5909 5297 6 921 11664 186 33 13 chr3 44042501 44045076 -115554707 + L1_Mur1 LINE L1 2525 5151 -735 6 921 41065 7 0 1 chr3 44045132 44051898 -115547885 - L1Md_A LINE L1 0 6582 1 6 921 264 59 0 0 chr3 44052162 44052196 -115547587 + (A)n Simple_repeat Simple_repeat 1 34 0 6 921 29 0 0 0 chr3 44052278 44052307 -115547476 + AT_rich Low_complexity Low_complexity 1 29 0 6 921 5783 166 32 10 chr3 44052928 44054506 -115545277 + Lx2 LINE L1 4739 6353 -644 6 921 291 397 48 34 chr3 44054540 44054686 -115545097 - MLT1E2 LTR MaLR -103 524 377 7 921 192 226 0 31 chr3 44054716 44054812 -115544971 + GA-rich Low_complexity Low_complexity 2 94 0 7 921 353 368 39 24 chr3 44055842 44056048 -115543735 - B3 SINE B2 -6 210 2 7 921 885 325 44 17 chr3 44056519 44056926 -115542857 - Lx8 LINE L1 -247 7226 6809 7 921 6040 141 48 2 chr3 44056939 44058168 -115541615 + Lx LINE L1 5366 6651 -3 7 921 594 0 0 0 chr3 44058562 44058628 -115541155 + (GA)n Simple_repeat Simple_repeat 1 66 0 7 921 965 265 22 32 chr3 44058811 44059088 -115540695 - Lx5 LINE L1 -294 6756 6483 7 921 392 319 26 0 chr3 44059135 44059251 -115540532 + B3 SINE B2 97 215 -1 7 921 29 70 0 0 chr3 44059272 44059329 -115540454 + AT_rich Low_complexity Low_complexity 1 57 0 7 921 262 325 0 0 chr3 44059401 44059555 -115540228 + A-rich Low_complexity Low_complexity 1 154 0 7 921 363 78 0 0 chr3 44060760 44060811 -115538972 + (TG)n Simple_repeat Simple_repeat 2 52 0 8 921 7668 52 1 8 chr3 44060876 44062364 -115537419 - L1Md_F2 LINE L1 -1 6581 5108 8 921 37943 42 2 6 chr3 44062369 44068521 -115531262 - L1Md_T LINE L1 0 6582 465 8 921 7785 46 10 0 chr3 44068524 44069489 -115530294 + L1_Mm LINE L1 4168 5142 -741 8 921 4036 202 48 93 chr3 44069521 44069840 -115529943 - L1_Mur2 LINE L1 -774 5103 4749 8 921 216 0 0 0 chr3 44069840 44069864 -115529919 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 8 921 397 156 21 44 chr3 44069864 44069969 -115529814 - B1_Mus2 SINE Alu -13 137 43 8 921 4036 202 48 93 chr3 44069969 44070708 -115529075 - L1_Mur2 LINE L1 -1129 4748 3992 8 921 3588 203 19 11 chr3 44070708 44070731 -115529052 + Lx LINE L1 5120 5142 -741 8 921 2948 26 218 0 chr3 44070731 44071121 -115528662 - IAPLTR2_Mm LTR ERVK 0 475 1 8 921 3588 183 28 7 chr3 44071121 44071930 -115527853 + Lx LINE L1 5143 5961 -693 8 921 25 75 0 0 chr3 44072489 44072542 -115527241 + AT_rich Low_complexity Low_complexity 1 53 0 8 921 208 241 0 0 chr3 44072924 44072982 -115526801 + A-rich Low_complexity Low_complexity 1 58 0 9 921 370 320 124 45 chr3 44073169 44073434 -115526349 + MER67B LTR ERV1 306 591 -70 9 921 26 50 0 0 chr3 44073857 44073897 -115525886 + AT_rich Low_complexity Low_complexity 1 40 0 9 921 273 119 0 0 chr3 44074150 44074192 -115525591 + (A)n Simple_repeat Simple_repeat 1 42 0 9 921 2675 92 5 42 chr3 44074201 44074610 -115525173 + MTA_Mm LTR MaLR 3 396 0 9 921 1375 92 5 0 chr3 44074880 44075065 -115524718 - B2_Mm1t SINE B2 -6 187 2 9 921 502 82 24 0 chr3 44075296 44075381 -115524402 + (TAGA)n Simple_repeat Simple_repeat 4 90 0 9 921 525 16 0 0 chr3 44077455 44077517 -115522266 + (TG)n Simple_repeat Simple_repeat 1 62 0 9 921 362 172 0 10 chr3 44077517 44077617 -115522166 + GA-rich Low_complexity Low_complexity 2 100 0 9 921 25 0 0 0 chr3 44077808 44077833 -115521950 + AT_rich Low_complexity Low_complexity 1 25 0 9 921 441 0 0 0 chr3 44077885 44077934 -115521849 + (TTTTG)n Simple_repeat Simple_repeat 2 50 0 1 921 218 211 276 17 chr3 44077983 44078041 -115521742 - B1F2 SINE Alu -74 75 3 1 921 591 244 39 0 chr3 44078113 44078240 -115521543 - RMER10B LTR ERVL -11 387 256 1 921 28 0 0 0 chr3 44078309 44078337 -115521446 + AT_rich Low_complexity Low_complexity 1 28 0 1 921 240 324 0 14 chr3 44078337 44078409 -115521374 + ID4 SINE ID 2 72 -11 1 921 219 157 0 0 chr3 44080931 44080982 -115518801 + A-rich Low_complexity Low_complexity 1 51 0 1 921 338 348 9 9 chr3 44081585 44081698 -115518085 - Lx8 LINE L1 -237 7236 7124 1 921 1320 164 0 0 chr3 44081952 44082177 -115517606 + L1_Mur1 LINE L1 4915 5139 -747 1 921 27708 125 40 5 chr3 44082182 44088186 -115511597 + Lx LINE L1 370 6567 0 1 921 6840 148 9 2 chr3 44088173 44089693 -115510090 + Lx LINE L1 5115 6646 -8 1 921 32982 73 5 3 chr3 44089886 44095115 -115504668 - L1Md_F2 LINE L1 -1 6581 1347 1 921 525 254 32 8 chr3 44095097 44095220 -115504563 - Lx5 LINE L1 -445 6605 6480 1 921 1505 262 31 60 chr3 44095705 44096188 -115503595 + Lx5 LINE L1 6582 7050 0 1 921 23 0 0 0 chr3 44096386 44096409 -115503374 + AT_rich Low_complexity Low_complexity 1 23 0 1 921 568 301 90 35 chr3 44096421 44096621 -115503162 + B3 SINE B2 4 214 -2 1 921 1077 76 7 0 chr3 44097354 44097499 -115502284 + B1_Mus1 SINE Alu 2 147 -1 1 921 231 140 0 0 chr3 44097504 44097554 -115502229 + (CAAAAA)n Simple_repeat Simple_repeat 4 53 0 1 921 4237 96 52 8 chr3 44097728 44098399 -115501384 + L1_Mus3 LINE L1 5978 6638 0 1 921 1237 229 47 88 chr3 44099788 44100152 -115499631 + RMER19B LTR ERVK 316 664 -238 1 921 1836 266 38 34 chr3 44100378 44100841 -115498942 - MT2A LTR ERVL 0 533 67 1 921 3012 23 3 0 chr3 44100841 44101186 -115498597 - ORR1A0 LTR MaLR 0 346 1 1 921 1836 266 38 34 chr3 44101186 44101252 -115498531 - MT2A LTR ERVL -467 66 2 1 921 265 326 11 11 chr3 44101468 44101558 -115498225 + MT2A LTR ERVL 284 373 -160 1 921 623 37 12 0 chr3 44101688 44101770 -115498013 + (TCTA)n Simple_repeat Simple_repeat 3 85 0 1 921 1831 144 98 26 chr3 44101953 44102330 -115497453 - RLTR9E LTR ERVK 0 409 6 1 921 1195 44 19 0 chr3 44102379 44102537 -115497246 + L1Md_F2 LINE L1 6419 6579 -3 1 921 1193 299 43 60 chr3 44102553 44103084 -115496699 - RLTR40 LTR ERVK -275 542 21 1 921 565 315 83 45 chr3 44103135 44103463 -115496320 - ORR1E LTR MaLR -9 350 14 1 921 215 197 39 26 chr3 44103796 44103874 -115495909 + (TA)n Simple_repeat Simple_repeat 1 79 0 1 921 21 0 0 0 chr3 44104033 44104054 -115495729 + AT_rich Low_complexity Low_complexity 1 21 0 1 921 270 179 44 9 chr3 44104345 44104439 -115495344 + (TA)n Simple_repeat Simple_repeat 1 97 0 1 921 282 73 0 0 chr3 44104439 44104480 -115495303 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 921 270 179 44 9 chr3 44104480 44104498 -115495285 + (TA)n Simple_repeat Simple_repeat 2 20 0 1 921 31 88 0 0 chr3 44106804 44106884 -115492899 + AT_rich Low_complexity Low_complexity 1 80 0 1 921 407 333 56 25 chr3 44107426 44107586 -115492197 + B3 SINE B2 44 208 -8 1 921 225 83 0 0 chr3 44107598 44107634 -115492149 + (A)n Simple_repeat Simple_repeat 1 36 0 1 921 1049 94 0 0 chr3 44107854 44107992 -115491791 + B1_Mm SINE Alu 1 138 -9 1 921 568 305 10 41 chr3 44109662 44109857 -115489926 + B3 SINE B2 20 208 -8 1 921 229 277 88 10 chr3 44109845 44109878 -115489905 + RMER12 LTR ERVK 727 760 -562 1 921 357 24 0 0 chr3 44109878 44109920 -115489863 + (CA)n Simple_repeat Simple_repeat 1 42 0 1 921 229 277 88 10 chr3 44109920 44109988 -115489795 + RMER12 LTR ERVK 761 835 -487 1 921 4188 52 0 8 chr3 44110130 44110653 -115489130 - MURVY-LTR LTR ERV1 0 519 1 1 921 286 303 73 8 chr3 44110756 44110879 -115488904 - L1MD LINE L1 -702 5540 5410 1 921 310 217 0 32 chr3 44110932 44110994 -115488789 + HAL1-3A_ME LINE L1 1975 2034 -824 1 921 206 143 0 58 chr3 44111019 44111071 -115488712 + A-rich Low_complexity Low_complexity 5 53 0 1 921 285 29 0 0 chr3 44111430 44111464 -115488319 + (CAA)n Simple_repeat Simple_repeat 3 36 0 1 921 2962 263 83 50 chr3 44111602 44112592 -115487191 - Lx6 LINE L1 -10 7450 6429 1 921 21419 106 21 5 chr3 44112592 44113920 -115485863 - L1Md_F2 LINE L1 0 6582 5251 1 921 495 0 0 0 chr3 44113920 44113975 -115485808 + (TA)n Simple_repeat Simple_repeat 2 56 0 1 921 21419 189 53 7 chr3 44113975 44117680 -115482103 - L1Md_F2 LINE L1 -636 5250 1341 1 921 4295 55 16 0 chr3 44117680 44118225 -115481558 - L1Md_F3 LINE L1 -1 6583 6030 1 921 21419 187 19 6 chr3 44118225 44119183 -115480600 - L1Md_F2 LINE L1 -4546 1340 412 1 921 3039 248 90 29 chr3 44119185 44120526 -115479257 - Lx6 LINE L1 -1021 6439 5017 1 921 915 173 0 19 chr3 44120811 44120970 -115478813 + B2_Mm2 SINE B2 4 159 -36 1 921 438 20 0 0 chr3 44120970 44121021 -115478762 + (TAAA)n Simple_repeat Simple_repeat 4 54 0 1 921 720 305 82 7 chr3 44121034 44121096 -115478687 - Lx9 LINE L1 -254 7390 7320 1 921 759 59 0 0 chr3 44121096 44121197 -115478586 + (TG)n Simple_repeat Simple_repeat 2 102 0 1 921 720 305 82 7 chr3 44121197 44121428 -115478355 - Lx9 LINE L1 -325 7319 7075 1 921 397 213 166 7 chr3 44121428 44121497 -115478286 + Lx9 LINE L1 7414 7485 -159 1 921 303 28 0 0 chr3 44121497 44121533 -115478250 + (TG)n Simple_repeat Simple_repeat 1 36 0 1 921 397 213 166 7 chr3 44121533 44121614 -115478169 + Lx9 LINE L1 7486 7588 -56 1 921 898 158 24 0 chr3 44121647 44121812 -115477971 + URR1A DNA MER1_type 58 226 0 1 921 266 148 19 0 chr3 44122734 44122788 -115476995 + (TA)n Simple_repeat Simple_repeat 2 56 0 1 921 501 17 0 0 chr3 44122992 44123050 -115476733 + (TTTC)n Simple_repeat Simple_repeat 3 60 0 1 921 24 0 0 0 chr3 44123138 44123162 -115476621 + AT_rich Low_complexity Low_complexity 1 24 0 1 921 307 276 60 52 chr3 44123193 44123327 -115476456 - Lx5 LINE L1 -8 7042 6908 1 921 1385 146 13 29 chr3 44123311 44123584 -115476199 + L1_Mur2 LINE L1 4685 4949 -928 1 921 236 119 14 56 chr3 44123856 44123927 -115475856 + GA-rich Low_complexity Low_complexity 5 72 0 1 921 326 344 12 12 chr3 44123987 44124235 -115475548 + A-rich Low_complexity Low_complexity 1 248 0 1 921 842 137 7 0 chr3 44124302 44124448 -115475335 + (TTCC)n Simple_repeat Simple_repeat 2 148 0 1 921 690 55 0 0 chr3 44125360 44125451 -115474332 + (CA)n Simple_repeat Simple_repeat 2 92 0 1 921 255 292 139 70 chr3 44126570 44126699 -115473084 + Lx6 LINE L1 7281 7418 -42 1 921 22 0 0 0 chr3 44127044 44127066 -115472717 + AT_rich Low_complexity Low_complexity 1 22 0 1 921 223 364 71 26 chr3 44127142 44127255 -115472528 - B2_Mm2 SINE B2 -77 118 1 1 921 1390 86 10 5 chr3 44128297 44128496 -115471287 + L1_Mus2 LINE L1 6041 6240 -326 1 921 585 145 7 64 chr3 44128502 44128642 -115471141 - L1Md_F3 LINE L1 -2 6582 6451 1 921 2020 102 0 4 chr3 44128642 44128908 -115470875 + L1_Mus1 LINE L1 6168 6433 -134 1 921 382 187 11 11 chr3 44129329 44129421 -115470362 + (TA)n Simple_repeat Simple_repeat 2 93 0 1 921 661 267 165 5 chr3 44129438 44129698 -115470085 - Lx8 LINE L1 -955 6689 6263 1 921 233 261 11 0 chr3 44129717 44129805 -115469978 + CT-rich Low_complexity Low_complexity 1 89 0 1 921 236 252 9 0 chr3 44129806 44129913 -115469870 + (TA)n Simple_repeat Simple_repeat 2 109 0 1 921 612 338 66 29 chr3 44130152 44130426 -115469357 + MTEa LTR MaLR 1 284 -95 1 921 342 329 0 34 chr3 44130538 44130714 -115469069 + CT-rich Low_complexity Low_complexity 1 170 0 1 921 1081 98 0 0 chr3 44131055 44131198 -115468585 - B1_Mus1 SINE Alu -5 143 1 1 921 23 0 0 0 chr3 44132308 44132331 -115467452 + AT_rich Low_complexity Low_complexity 1 23 0 1 921 242 95 24 0 chr3 44132779 44132821 -115466962 + (CACAT)n Simple_repeat Simple_repeat 1 43 0 1 921 252 0 0 0 chr3 44133410 44133438 -115466345 + (A)n Simple_repeat Simple_repeat 1 28 0 1 921 1290 64 6 0 chr3 44133615 44133787 -115465996 + L1Md_T LINE L1 6410 6582 0 1 921 449 326 95 42 chr3 44134178 44134556 -115465227 + L1_Rod LINE L1 5394 5791 -56 1 921 276 103 34 17 chr3 44134664 44134723 -115465060 + (TA)n Simple_repeat Simple_repeat 2 61 0 1 921 486 352 85 15 chr3 44135441 44135701 -115464082 - Lx8 LINE L1 -1 7472 7195 1 921 2202 244 132 102 chr3 44136435 44137120 -115462663 + L1_Mur3 LINE L1 65 863 -6865 1 921 243 0 0 0 chr3 44137120 44137147 -115462636 + (CA)n Simple_repeat Simple_repeat 2 28 0 1 921 2202 244 132 102 chr3 44137147 44137566 -115462217 + L1_Mur3 LINE L1 864 1201 -6527 1 921 369 0 0 0 chr3 44137732 44137773 -115462010 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 921 13921 224 59 51 chr3 44137969 44138429 -115461354 + L1_Mur3 LINE L1 1164 1640 -4240 1 921 371 0 68 0 chr3 44138429 44138488 -115461295 + (TA)n Simple_repeat Simple_repeat 1 63 0 1 921 13921 221 64 54 chr3 44138488 44139921 -115459862 + L1_Mur3 LINE L1 1641 3131 -2749 1 921 250 71 24 0 chr3 44139921 44139963 -115459820 + B1_Mur4 SINE Alu 105 147 -3 1 921 245 29 29 0 chr3 44139963 44139997 -115459786 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1 921 13921 221 64 54 chr3 44139997 44140216 -115459567 + L1_Mur3 LINE L1 3132 3353 -2527 1 921 234 81 0 0 chr3 44140216 44140253 -115459530 + (CACAA)n Simple_repeat Simple_repeat 2 38 0 1 921 13921 221 64 54 chr3 44140253 44140359 -115459424 + L1_Mur3 LINE L1 3354 3475 -2405 1 921 762 69 0 0 chr3 44140359 44140460 -115459323 + (CAAAG)n Simple_repeat Simple_repeat 2 102 0 1 921 958 137 0 0 chr3 44140463 44140609 -115459174 + B1_Mus1 SINE Alu 3 148 0 1 921 13921 221 64 54 chr3 44140609 44140959 -115458824 + L1_Mur3 LINE L1 3476 3736 -2144 1 921 189 0 0 0 chr3 44140959 44140980 -115458803 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 1 921 13921 221 64 54 chr3 44140980 44142896 -115456887 + L1_Mur3 LINE L1 3737 5738 -142 1 921 1065 136 0 0 chr3 44143888 44144065 -115455718 + (CA)n Simple_repeat Simple_repeat 2 178 0 1 921 225 94 0 0 chr3 44144070 44144102 -115455681 + (CATATA)n Simple_repeat Simple_repeat 4 35 0 1 921 2998 50 0 0 chr3 44144117 44144493 -115455290 - L1Md_T LINE L1 0 6582 6207 1 921 763 299 87 76 chr3 44144499 44145142 -115454641 + MTC-int LTR MaLR 314 1058 -200 1 921 458 248 25 44 chr3 44145148 44145308 -115454475 - Lx7 LINE L1 -2 7694 7538 1 921 5099 182 34 4 chr3 44145307 44146044 -115453739 + Lx2B LINE L1 4931 5730 -1270 1 921 1661 160 29 10 chr3 44146044 44146354 -115453429 + Lx2 LINE L1 6681 6996 -1 1 921 5099 218 95 14 chr3 44146354 44147534 -115452249 + Lx2B LINE L1 5731 6982 -18 1 921 206 62 0 30 chr3 44147555 44147588 -115452195 + (CAAAAA)n Simple_repeat Simple_repeat 3 34 0 2 921 884 310 77 11 chr3 44147808 44148186 -115451597 + MTD LTR MaLR 1 403 -16 2 921 4802 115 21 17 chr3 44149424 44150175 -115449608 - L1_Mus3 LINE L1 -21 6617 5864 2 921 1456 117 0 22 chr3 44150175 44150395 -115449388 + L1_Mus3 LINE L1 5620 5835 -803 2 921 1059 110 0 0 chr3 44150395 44150541 -115449242 - B1_Mus1 SINE Alu -2 146 1 2 921 33 0 0 0 chr3 44150671 44150704 -115449079 + AT_rich Low_complexity Low_complexity 1 33 0 2 921 36 82 0 0 chr3 44152547 44152632 -115447151 + AT_rich Low_complexity Low_complexity 1 85 0 2 921 3750 165 19 3 chr3 44153597 44154289 -115445494 + Lx2 LINE L1 6294 6996 -1 2 921 465 19 0 0 chr3 44154413 44154467 -115445316 + (GA)n Simple_repeat Simple_repeat 2 55 0 2 921 360 246 66 3 chr3 44154723 44154840 -115444943 + MTD LTR MaLR 213 342 -79 2 921 28 48 0 0 chr3 44155007 44155049 -115444734 + AT_rich Low_complexity Low_complexity 1 42 0 2 921 24 0 0 0 chr3 44155197 44155221 -115444562 + AT_rich Low_complexity Low_complexity 1 24 0 2 921 354 74 0 0 chr3 44155846 44155900 -115443883 - Lx LINE L1 -284 6370 6317 2 921 1695 137 0 7 chr3 44155900 44156179 -115443604 + Lx LINE L1 6372 6648 -6 2 921 343 353 7 29 chr3 44158309 44158446 -115441337 - B3A SINE B2 -64 134 1 2 921 23 33 0 0 chr3 44158627 44158657 -115441126 + AT_rich Low_complexity Low_complexity 1 30 0 2 921 450 157 0 10 chr3 44158723 44158826 -115440957 - Lx3_Mus LINE L1 0 7009 6908 2 921 442 311 37 0 chr3 44159910 44160045 -115439738 - B1F1 SINE Alu -4 145 6 2 921 3303 94 207 65 chr3 44160252 44160910 -115438873 - RMER17A LTR ERVK 0 751 1 2 921 180 0 0 0 chr3 44160958 44160978 -115438805 + (TA)n Simple_repeat Simple_repeat 1 20 0 2 921 216 304 21 11 chr3 44163063 44163156 -115436627 + CT-rich Low_complexity Low_complexity 1 94 0 2 921 6423 63 0 2 chr3 44163974 44164798 -115434985 - L1Md_F2 LINE L1 -5 6577 5756 2 921 2621 106 3 5 chr3 44164798 44165168 -115434615 - L1Md_F LINE L1 -5889 630 260 2 921 752 313 32 58 chr3 44165946 44166255 -115433528 - MER57F LTR ERV1 -135 301 1 2 921 255 223 0 69 chr3 44166439 44166540 -115433243 + A-rich Low_complexity Low_complexity 3 96 0 2 921 208 234 0 21 chr3 44166763 44166811 -115432972 + (CA)n Simple_repeat Simple_repeat 2 48 0 2 921 1123 303 77 29 chr3 44167513 44167825 -115431958 - Lx6 LINE L1 -11 7449 7117 2 921 1470 224 99 67 chr3 44167825 44168494 -115431289 + RMER6C LTR ERVK 1 690 0 2 921 1123 303 77 29 chr3 44168494 44168623 -115431160 - Lx6 LINE L1 -344 7116 6987 2 921 800 332 76 0 chr3 44168624 44168928 -115430855 + Lx6 LINE L1 6184 6510 -950 2 921 487 355 105 75 chr3 44169243 44169307 -115430476 + LTR68 LTR ERV1 162 229 -511 2 921 216 0 0 0 chr3 44169307 44169331 -115430452 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2 921 487 355 105 75 chr3 44169331 44169705 -115430078 + LTR68 LTR ERV1 230 613 -127 2 921 24 53 0 0 chr3 44170057 44170095 -115429688 + AT_rich Low_complexity Low_complexity 1 38 0 2 921 24 0 0 0 chr3 44170449 44170473 -115429310 + AT_rich Low_complexity Low_complexity 1 24 0 2 922 21 0 0 0 chr3 44171701 44171722 -115428061 + AT_rich Low_complexity Low_complexity 1 21 0 2 922 693 36 0 0 chr3 44172038 44172122 -115427661 + (CA)n Simple_repeat Simple_repeat 1 84 0 2 922 435 38 0 0 chr3 44172122 44172174 -115427609 + (TA)n Simple_repeat Simple_repeat 1 53 0 2 922 202 309 119 18 chr3 44172782 44172950 -115426833 + L2 LINE L2 1758 1942 -1477 2 922 397 194 8 92 chr3 44172964 44173083 -115426700 - Lx4B LINE L1 0 7058 6950 2 922 2809 104 5 5 chr3 44173839 44174245 -115425538 + Lx LINE L1 6035 6440 -214 2 922 3248 95 29 0 chr3 44174884 44175335 -115424448 - Lx3_Mus LINE L1 -67 5819 5356 2 922 3072 160 36 14 chr3 44175333 44176154 -115423629 + Lx3_Mus LINE L1 5827 6724 -285 2 922 206 250 18 0 chr3 44176419 44176475 -115423308 + (TATATG)n Simple_repeat Simple_repeat 3 59 0 2 922 331 21 42 0 chr3 44176710 44176758 -115423025 + (TA)n Simple_repeat Simple_repeat 1 50 0 2 922 31 68 0 0 chr3 44177267 44177326 -115422457 + AT_rich Low_complexity Low_complexity 1 59 0 2 922 28 48 0 0 chr3 44178312 44178354 -115421429 + AT_rich Low_complexity Low_complexity 1 42 0 2 922 424 108 0 0 chr3 44178503 44178568 -115421215 - Lx2A LINE L1 -294 6714 6650 2 922 266 204 145 34 chr3 44178565 44178682 -115421101 + Lx2A LINE L1 6867 6996 -12 2 922 369 312 32 50 chr3 44179719 44179938 -115419845 - B3 SINE B2 0 216 2 2 922 243 0 0 0 chr3 44181167 44181194 -115418589 + (TG)n Simple_repeat Simple_repeat 1 27 0 2 922 450 94 0 0 chr3 44181194 44181258 -115418525 + (TA)n Simple_repeat Simple_repeat 1 64 0 2 922 228 100 0 0 chr3 44181370 44181410 -115418373 + (TG)n Simple_repeat Simple_repeat 1 40 0 2 922 930 92 0 0 chr3 44181411 44181542 -115418241 - B1_Mus1 SINE Alu -6 142 12 2 922 405 273 40 116 chr3 44181542 44181609 -115418174 - B4 SINE B4 -71 220 38 2 922 5631 113 1 25 chr3 44181919 44182755 -115417028 - Lx LINE L1 -193 6461 5646 2 922 221 159 0 0 chr3 44183324 44183368 -115416415 + T-rich Low_complexity Low_complexity 5 48 0 2 922 4577 62 10 18 chr3 44183381 44183614 -115416169 - L1Md_F2 LINE L1 0 6582 6348 2 922 2695 60 0 0 chr3 44183614 44183946 -115415837 + IAPEY3_LTR LTR ERVK 1 332 0 2 922 4577 62 10 18 chr3 44183946 44184321 -115415462 - L1Md_F2 LINE L1 -235 6347 5979 2 922 2997 72 10 5 chr3 44184451 44184845 -115414938 - MTA_Mm LTR MaLR 0 396 1 2 922 405 0 0 0 chr3 44186787 44186832 -115412951 + (TGAG)n Simple_repeat Simple_repeat 3 47 0 2 922 570 29 0 0 chr3 44187403 44187471 -115412312 + (GA)n Simple_repeat Simple_repeat 2 69 0 2 922 3749 184 125 0 chr3 44189089 44189899 -115409884 + Lx3_Mus LINE L1 225 1135 -5849 2 922 511 97 0 0 chr3 44189885 44189957 -115409826 + Lx3_Mus LINE L1 1749 1820 -4066 2 922 4609 116 8 17 chr3 44189957 44190729 -115409054 + Lx3_Mus LINE L1 2996 3760 -2126 2 922 4893 158 55 12 chr3 44190737 44191929 -115407854 + L1VL1 LINE L1 206 1443 -2255 2 922 207 0 0 0 chr3 44191929 44191952 -115407831 + (TAA)n Simple_repeat Simple_repeat 3 25 0 2 922 4893 111 32 13 chr3 44191952 44192327 -115407456 + L1VL1 LINE L1 1444 1839 -1859 2 922 15950 142 12 15 chr3 44192311 44192518 -115407265 + L1_Mus2 LINE L1 3150 3363 -2520 2 922 1014 102 7 0 chr3 44192518 44192655 -115407128 + B1_Mm SINE Alu 1 138 -9 2 922 15950 145 21 28 chr3 44192655 44195955 -115403828 + L1_Mus2 LINE L1 3364 6638 0 2 922 10928 123 24 29 chr3 44195951 44198926 -115400857 + Lx3_Mus LINE L1 4054 7004 -5 2 922 456 237 29 0 chr3 44200320 44200459 -115399324 - Lx9 LINE L1 -9 7635 7493 2 922 231 36 0 0 chr3 44200484 44200512 -115399271 + (TG)n Simple_repeat Simple_repeat 2 29 0 2 922 237 268 69 11 chr3 44200521 44200608 -115399175 - Lx9 LINE L1 -237 7407 7316 2 922 667 223 220 3 chr3 44200619 44200917 -115398866 + Lx9 LINE L1 6844 7207 -437 2 922 781 33 41 0 chr3 44200992 44201113 -115398670 + (TC)n Simple_repeat Simple_repeat 1 126 0 2 922 5713 182 61 41 chr3 44201449 44204071 -115395712 - Lx5 LINE L1 -931 6119 2279 2 922 640 174 17 17 chr3 44204071 44204188 -115395595 + RodERV21-int LTR ERV1 4550 4666 -325 2 922 1200 197 89 114 chr3 44204229 44204624 -115395159 + RMER21B LTR ERV1 1 385 -457 2 922 35798 18 16 21 chr3 44204624 44209263 -115390520 + L1Md_A LINE L1 218 4834 -1049 2 922 2417 96 107 30 chr3 44209263 44209704 -115390079 - IAPLTR2_Mm LTR ERVK 0 475 1 2 922 35798 11 16 17 chr3 44209704 44209743 -115390040 + L1Md_A LINE L1 4835 4876 -1007 2 922 225 183 46 77 chr3 44209743 44209808 -115389975 - RMER20A LTR ERVK -268 248 186 2 922 35798 11 16 17 chr3 44209808 44210410 -115389373 + L1Md_A LINE L1 4877 5534 -349 2 922 883 211 24 77 chr3 44210410 44210462 -115389321 + RMER21B LTR ERV1 499 537 -410 2 922 8684 19 1 0 chr3 44210462 44211457 -115388326 + L1Md_A LINE L1 5587 6582 0 2 922 883 211 24 77 chr3 44211457 44211650 -115388133 + RMER21B LTR ERV1 538 731 -216 2 922 680 277 54 84 chr3 44212378 44212819 -115386964 + RLTR40 LTR ERVK 116 543 -274 2 922 1516 139 4 4 chr3 44213708 44213946 -115385837 + Lx2 LINE L1 6164 6401 -596 2 922 519 143 0 0 chr3 44213938 44214022 -115385761 + Lx2 LINE L1 6560 6643 -354 2 922 2199 242 27 6 chr3 44214010 44214526 -115385257 + Lx5 LINE L1 6520 7046 -4 2 922 938 328 69 33 chr3 44215097 44215706 -115384077 + Lx9 LINE L1 6839 7469 -175 2 922 337 67 0 0 chr3 44216258 44216303 -115383480 - BC1_Mm scRNA scRNA -74 78 34 2 922 22 70 0 0 chr3 44217437 44217480 -115382303 + AT_rich Low_complexity Low_complexity 1 43 0 2 922 23 0 0 0 chr3 44218187 44218210 -115381573 + AT_rich Low_complexity Low_complexity 1 23 0 2 922 341 329 43 93 chr3 44218505 44218666 -115381117 - B3A SINE B2 -44 154 2 2 922 225 0 0 0 chr3 44218745 44218770 -115381013 + (T)n Simple_repeat Simple_repeat 1 25 0 2 922 289 316 43 25 chr3 44219059 44219221 -115380562 - L1M2 LINE L1 -380 5809 5645 2 922 234 268 14 0 chr3 44219220 44219291 -115380492 + L1M2 LINE L1 4907 4978 -1165 2 922 579 307 83 106 chr3 44220590 44221060 -115378723 - RLTR26 LTR ERVK -182 460 2 2 922 621 338 10 34 chr3 44221068 44221276 -115378507 - B3 SINE B2 0 216 14 2 922 270 0 0 0 chr3 44221448 44221478 -115378305 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 2 922 256 77 19 19 chr3 44221560 44221613 -115378170 + (TTTTG)n Simple_repeat Simple_repeat 1 53 0 2 922 757 339 49 49 chr3 44221613 44221960 -115377823 - ORR1E LTR MaLR -10 349 3 2 922 285 51 0 0 chr3 44222239 44222278 -115377505 + (TTTTG)n Simple_repeat Simple_repeat 1 39 0 2 922 1407 58 0 0 chr3 44222551 44222723 -115377060 - L1Md_F2 LINE L1 -824 5758 5587 2 922 2547 71 3 28 chr3 44222732 44223120 -115376663 + L1Md_F2 LINE L1 6226 6582 0 2 922 9891 142 44 68 chr3 44223134 44224473 -115375310 + L1_Mur2 LINE L1 673 1989 -3888 2 922 227 54 27 0 chr3 44224473 44224510 -115375273 + (CAA)n Simple_repeat Simple_repeat 2 39 0 2 922 9891 136 55 51 chr3 44224510 44224570 -115375213 + L1_Mur2 LINE L1 1990 2054 -3823 2 922 374 85 17 0 chr3 44224570 44224629 -115375154 + (CA)n Simple_repeat Simple_repeat 2 61 0 2 922 9891 136 55 51 chr3 44224629 44225886 -115373897 + L1_Mur2 LINE L1 2055 3288 -2589 2 922 866 173 97 5 chr3 44225890 44226076 -115373707 + Lx4A LINE L1 6855 7057 -1 2 922 267 103 0 0 chr3 44226102 44226141 -115373642 + (TAA)n Simple_repeat Simple_repeat 1 39 0 2 922 7054 170 75 6 chr3 44226239 44227672 -115372111 + ORR1A3-int LTR MaLR 432 1963 0 2 922 1608 143 85 7 chr3 44227672 44227967 -115371816 + ORR1A3 LTR MaLR 1 318 -8 2 922 388 265 220 14 chr3 44228587 44228805 -115370978 - MTD LTR MaLR -58 361 99 2 922 980 79 0 28 chr3 44230507 44230638 -115369145 + B1_Mm SINE Alu 7 135 -12 2 922 531 0 0 0 chr3 44230638 44230697 -115369086 + (CAAAA)n Simple_repeat Simple_repeat 2 60 0 3 922 980 79 0 28 chr3 44230697 44230709 -115369074 + B1_Mm SINE Alu 136 146 -1 2 922 283 289 0 43 chr3 44230722 44230816 -115368967 + GA-rich Low_complexity Low_complexity 3 92 0 3 922 505 133 0 0 chr3 44231243 44231341 -115368442 - L1_Mus3 LINE L1 -1 6637 6540 3 922 649 287 45 5 chr3 44231469 44231693 -115368090 + MER89-int LTR ERV1 5556 5788 -1013 3 922 266 262 75 0 chr3 44231763 44231843 -115367940 - PB1D10 SINE Alu -6 111 26 3 922 1762 291 52 62 chr3 44232496 44233243 -115366540 - ORR1D2-int LTR MaLR 0 1370 631 3 922 680 321 104 70 chr3 44233353 44233694 -115366089 - ORR1D2-int LTR MaLR -970 400 43 3 922 279 54 0 0 chr3 44233694 44233731 -115366052 + (CA)n Simple_repeat Simple_repeat 1 37 0 3 922 680 321 104 70 chr3 44233731 44233774 -115366009 - ORR1D2-int LTR MaLR -1328 42 3 3 922 1268 299 13 47 chr3 44233775 44233977 -115365806 - ORR1D2 LTR MaLR 0 370 175 3 922 2083 108 106 19 chr3 44233977 44234353 -115365430 + RLTR9E LTR ERVK 1 409 0 3 922 1268 299 13 47 chr3 44234353 44234533 -115365250 - ORR1D2 LTR MaLR -196 174 1 3 922 412 366 136 24 chr3 44235935 44236265 -115363518 - MTEa LTR MaLR -12 367 1 3 922 302 284 185 0 chr3 44236277 44236358 -115363425 + URR1B DNA MER1_type 1 96 -129 3 922 330 322 61 14 chr3 44236569 44236717 -115363066 - Lx9 LINE L1 -1183 6461 6307 3 922 584 238 186 31 chr3 44236719 44236945 -115362838 - Lx9 LINE L1 -1 7643 7383 3 922 290 250 43 0 chr3 44237008 44237100 -115362683 + URR1B DNA MER1_type 37 132 -93 3 922 726 187 245 26 chr3 44237101 44237293 -115362490 - Lx5 LINE L1 -429 6621 6388 3 922 1774 234 33 18 chr3 44237304 44237760 -115362023 + Lx5 LINE L1 5855 6317 -733 3 922 22 35 0 0 chr3 44237798 44237827 -115361956 + AT_rich Low_complexity Low_complexity 1 29 0 3 922 414 0 0 0 chr3 44238022 44238068 -115361715 + (TTTTG)n Simple_repeat Simple_repeat 4 49 0 3 922 22 70 0 0 chr3 44239617 44239660 -115360123 + AT_rich Low_complexity Low_complexity 1 43 0 3 922 405 167 0 0 chr3 44240724 44240802 -115358981 + (TG)n Simple_repeat Simple_repeat 2 79 0 3 922 358 359 112 18 chr3 44241670 44241695 -115358088 - B3A SINE B2 -11 187 162 3 922 741 82 0 0 chr3 44241695 44241805 -115357978 + (TG)n Simple_repeat Simple_repeat 1 110 0 3 922 358 359 112 18 chr3 44241805 44241949 -115357834 - B3A SINE B2 -37 161 2 3 922 2878 114 30 15 chr3 44242112 44242576 -115357207 + L1_Mus4 LINE L1 6151 6621 -15 3 922 393 342 116 34 chr3 44243551 44243784 -115355999 - LTR80A LTR ERVL -26 557 306 3 922 1129 235 25 7 chr3 44243849 44244189 -115355594 + Lx2B LINE L1 6249 6913 -63 3 922 227 227 165 33 chr3 44244513 44244604 -115355179 + Lx8 LINE L1 7370 7472 -1 3 922 1293 158 0 5 chr3 44244648 44244871 -115354912 - L1_Mm LINE L1 -443 5440 5219 3 922 1029 161 0 0 chr3 44244871 44245051 -115354732 + L1_Mus4 LINE L1 6457 6636 0 3 922 203 271 0 0 chr3 44245086 44245145 -115354638 + A-rich Low_complexity Low_complexity 1 59 0 3 922 432 0 0 0 chr3 44245441 44245489 -115354294 + (TA)n Simple_repeat Simple_repeat 2 49 0 3 922 370 321 69 35 chr3 44245634 44245837 -115353946 + Cheshire DNA MER1_type 51 260 -2160 3 922 309 212 0 0 chr3 44246324 44246437 -115353346 + (TG)n Simple_repeat Simple_repeat 1 113 0 3 922 1023 219 3 4 chr3 44247468 44247700 -115352083 - L1Md_F2 LINE L1 -725 5857 5625 3 922 195 113 40 40 chr3 44248001 44248075 -115351708 + (TA)n Simple_repeat Simple_repeat 1 74 0 3 922 643 317 152 33 chr3 44248657 44248846 -115350937 - MTEb LTR MaLR 0 379 183 3 922 818 102 8 0 chr3 44248846 44248973 -115350810 + (TTTC)n Simple_repeat Simple_repeat 3 130 0 3 922 643 317 152 33 chr3 44248973 44249113 -115350670 - MTEb LTR MaLR -197 182 12 3 922 29 0 0 0 chr3 44249714 44249743 -115350040 + AT_rich Low_complexity Low_complexity 1 29 0 3 922 1492 49 5 5 chr3 44249751 44249937 -115349846 + B2_Mm1t SINE B2 1 186 -7 3 922 26 50 0 0 chr3 44250570 44250610 -115349173 + AT_rich Low_complexity Low_complexity 1 40 0 3 922 211 391 0 0 chr3 44250622 44250686 -115349097 - RSINE1 SINE B4 -16 149 86 3 922 21 0 0 0 chr3 44251668 44251689 -115348094 + AT_rich Low_complexity Low_complexity 1 21 0 3 922 370 372 25 31 chr3 44252502 44252788 -115346995 + B4 SINE B4 2 285 -7 3 922 435 132 0 0 chr3 44252850 44252941 -115346842 + (TA)n Simple_repeat Simple_repeat 1 91 0 3 922 23 0 0 0 chr3 44253076 44253099 -115346684 + AT_rich Low_complexity Low_complexity 1 23 0 3 922 596 14 0 14 chr3 44253375 44253449 -115346334 + (TAAA)n Simple_repeat Simple_repeat 3 75 0 3 922 457 286 22 143 chr3 44253666 44253890 -115345893 - Lx8 LINE L1 -220 7253 7057 3 922 213 324 15 0 chr3 44254168 44254236 -115345547 - L2 LINE L2 -1408 2011 1943 3 922 2931 123 7 2 chr3 44254510 44254959 -115344824 + Lx2 LINE L1 6545 6995 -2 3 922 27 29 0 0 chr3 44255518 44255552 -115344231 + AT_rich Low_complexity Low_complexity 1 34 0 3 922 21 0 0 0 chr3 44256213 44256234 -115343549 + AT_rich Low_complexity Low_complexity 1 21 0 3 922 908 317 65 38 chr3 44256410 44256751 -115343032 - ORR1E LTR MaLR -4 355 6 3 922 390 21 0 0 chr3 44258291 44258338 -115341445 + (TG)n Simple_repeat Simple_repeat 1 47 0 3 922 480 18 0 0 chr3 44258338 44258394 -115341389 + (GA)n Simple_repeat Simple_repeat 1 57 0 3 922 426 370 52 0 chr3 44258788 44258961 -115340822 - ID_B1 SINE B4 -34 190 9 3 922 25 99 0 0 chr3 44260939 44261020 -115338763 + AT_rich Low_complexity Low_complexity 1 81 0 3 922 30 0 0 0 chr3 44261088 44261118 -115338665 + AT_rich Low_complexity Low_complexity 1 30 0 3 922 37477 47 1 3 chr3 44261223 44267503 -115332280 - L1Md_T LINE L1 0 6585 220 3 922 24 0 0 0 chr3 44267517 44267541 -115332242 + AT_rich Low_complexity Low_complexity 1 24 0 3 922 2185 42 18 7 chr3 44267559 44267844 -115331939 + L1Md_F3 LINE L1 6297 6584 0 3 922 351 0 0 0 chr3 44268706 44268745 -115331038 + (TCTA)n Simple_repeat Simple_repeat 2 40 0 3 922 534 70 0 0 chr3 44268806 44268877 -115330906 + (TA)n Simple_repeat Simple_repeat 2 72 0 3 922 296 131 0 14 chr3 44268878 44268948 -115330835 + (GA)n Simple_repeat Simple_repeat 1 69 0 3 922 384 22 0 0 chr3 44269007 44269052 -115330731 + (TC)n Simple_repeat Simple_repeat 2 46 0 3 922 1354 271 56 13 chr3 44269052 44269423 -115330360 + MTD LTR MaLR 19 406 -13 3 922 520 248 103 78 chr3 44269430 44269662 -115330121 + MTD-int LTR MaLR 1 238 -1020 3 922 2095 104 135 3 chr3 44269664 44270012 -115329771 + L1_Mus4 LINE L1 6225 6618 -18 3 922 1403 291 54 51 chr3 44270029 44270562 -115329221 + MTD-int LTR MaLR 261 1268 -524 3 922 200 130 22 0 chr3 44270652 44270698 -115329085 + (TA)n Simple_repeat Simple_repeat 2 48 0 3 922 27 62 0 0 chr3 44270812 44270860 -115328923 + AT_rich Low_complexity Low_complexity 1 48 0 3 922 188 122 0 24 chr3 44270956 44270998 -115328785 + (CAAAA)n Simple_repeat Simple_repeat 4 44 0 3 922 230 73 0 24 chr3 44271012 44271054 -115328729 + (CA)n Simple_repeat Simple_repeat 2 42 0 3 922 26 0 0 0 chr3 44271120 44271146 -115328637 + AT_rich Low_complexity Low_complexity 1 26 0 3 922 213 117 50 0 chr3 44271173 44271233 -115328550 + (TA)n Simple_repeat Simple_repeat 1 63 0 3 922 245 274 116 0 chr3 44271233 44271328 -115328455 + MTD-int LTR MaLR 1153 1258 0 3 922 1704 246 17 15 chr3 44271363 44271768 -115328015 + MTD LTR MaLR 14 419 0 3 922 1473 130 47 8 chr3 44272021 44272276 -115327507 + Lx3A LINE L1 6661 6925 -56 3 922 379 71 18 0 chr3 44272282 44272338 -115327445 - BGLII_Mus LTR ERVK 0 422 366 3 922 1332 137 5 41 chr3 44272352 44272382 -115327401 - BGLII_Mus LTR ERVK -209 213 188 3 922 747 62 0 0 chr3 44272382 44272479 -115327304 + (TC)n Simple_repeat Simple_repeat 2 98 0 3 922 1332 137 5 41 chr3 44272479 44272669 -115327114 - BGLII_Mus LTR ERVK -235 187 1 3 922 464 84 0 0 chr3 44272669 44272740 -115327043 + Lx3A LINE L1 6904 6974 -7 3 922 29 0 0 0 chr3 44272764 44272793 -115326990 + AT_rich Low_complexity Low_complexity 1 29 0 3 922 540 298 92 13 chr3 44273316 44273591 -115326192 + Lx9 LINE L1 7216 7516 -128 3 922 815 29 10 0 chr3 44273591 44273693 -115326090 + (TAGA)n Simple_repeat Simple_repeat 4 106 0 3 922 540 298 92 13 chr3 44273693 44273720 -115326063 + Lx9 LINE L1 7517 7542 -102 3 922 57 47 0 0 chr3 44273774 44273859 -115325924 + AT_rich Low_complexity Low_complexity 1 85 0 3 922 317 319 92 10 chr3 44274752 44274958 -115324825 + L1M2 LINE L1 4187 4409 -1734 3 922 261 22 65 0 chr3 44275064 44275110 -115324673 + (TTTTG)n Simple_repeat Simple_repeat 1 49 0 3 922 4184 186 85 17 chr3 44275121 44276086 -115323697 - L1_Mur2 LINE L1 -1162 4715 3685 3 922 3848 167 40 12 chr3 44276082 44276285 -115323498 - L1_Mur2 LINE L1 -3062 2824 2630 3 922 984 41 0 0 chr3 44276285 44276406 -115323377 + (TA)n Simple_repeat Simple_repeat 2 122 0 3 922 3848 167 40 12 chr3 44276406 44276954 -115322829 - L1_Mur2 LINE L1 -3257 2629 2054 3 922 240 297 25 0 chr3 44277909 44277994 -115321789 + B3A SINE B2 14 103 -92 3 922 21 0 0 0 chr3 44278846 44278867 -115320916 + AT_rich Low_complexity Low_complexity 1 21 0 3 922 8072 46 2 0 chr3 44278867 44280056 -115319727 - L1Md_F2 LINE L1 0 6582 5392 3 922 328 332 93 56 chr3 44280520 44280734 -115319049 + MLT1L LTR MaLR 366 587 -23 3 922 2405 184 24 38 chr3 44281259 44282005 -115317778 + Lx5 LINE L1 5354 6098 -952 3 922 903 155 9 138 chr3 44282025 44282235 -115317548 + RLTR10D LTR ERVK 177 359 0 3 922 28 0 0 0 chr3 44283622 44283650 -115316133 + AT_rich Low_complexity Low_complexity 1 28 0 3 922 922 173 5 5 chr3 44283779 44284005 -115315778 + GA-rich Low_complexity Low_complexity 1 226 0 3 922 901 158 11 0 chr3 44284025 44284202 -115315581 + GA-rich Low_complexity Low_complexity 2 180 0 3 922 372 231 136 32 chr3 44284240 44284365 -115315418 + B3A SINE B2 5 142 -56 3 922 522 98 0 0 chr3 44284509 44284591 -115315192 + (TG)n Simple_repeat Simple_repeat 1 82 0 3 922 21 0 0 0 chr3 44285040 44285061 -115314722 + AT_rich Low_complexity Low_complexity 1 21 0 3 922 307 287 144 40 chr3 44286208 44286466 -115313317 - ORR1C1 LTR MaLR -2 372 1 3 922 232 276 92 0 chr3 44286597 44286673 -115313110 - MER58B DNA MER1_type 0 341 259 3 922 507 17 0 0 chr3 44286923 44286983 -115312800 + (TG)n Simple_repeat Simple_repeat 2 61 0 3 922 3061 59 5 10 chr3 44286984 44287380 -115312403 - MTA_Mm LTR MaLR -2 394 1 3 922 270 0 0 0 chr3 44287489 44287519 -115312264 + (TA)n Simple_repeat Simple_repeat 1 30 0 3 922 309 232 10 0 chr3 44287529 44287628 -115312155 + Lx9 LINE L1 7543 7642 -2 3 922 25 31 0 0 chr3 44288614 44288646 -115311137 + AT_rich Low_complexity Low_complexity 1 32 0 3 922 1150 168 8 8 chr3 44288828 44289062 -115310721 - Lx2 LINE L1 0 6997 6764 3 922 273 217 0 0 chr3 44289273 44289356 -115310427 + (TA)n Simple_repeat Simple_repeat 1 83 0 4 922 256 266 16 0 chr3 44290358 44290422 -115309361 - B1F SINE Alu -65 84 20 4 922 234 0 0 0 chr3 44290453 44290479 -115309304 + (TTG)n Simple_repeat Simple_repeat 2 27 0 4 922 23 0 0 0 chr3 44291238 44291261 -115308522 + AT_rich Low_complexity Low_complexity 1 23 0 4 922 359 113 0 16 chr3 44292498 44292561 -115307222 + (CA)n Simple_repeat Simple_repeat 2 63 0 4 922 204 125 0 0 chr3 44294235 44294267 -115305516 + (T)n Simple_repeat Simple_repeat 1 32 0 4 922 1488 232 160 35 chr3 44294524 44295079 -115304704 + RMER12 LTR ERVK 14 583 -1265 4 922 616 244 120 38 chr3 44295094 44295303 -115304480 + RMER12 LTR ERVK 991 1216 -106 4 922 283 237 78 13 chr3 44295300 44295377 -115304406 + RLTR21 LTR ERVK 1491 1572 0 4 922 233 29 0 29 chr3 44295470 44295505 -115304278 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 4 922 216 0 0 0 chr3 44295663 44295687 -115304096 + (TTTAA)n Simple_repeat Simple_repeat 2 25 0 4 922 691 32 21 0 chr3 44295836 44295930 -115303853 + (TC)n Simple_repeat Simple_repeat 1 96 0 4 922 257 302 41 16 chr3 44295938 44296059 -115303724 - Lx9 LINE L1 -204 7440 7317 4 922 221 382 26 0 chr3 44298795 44298871 -115300912 - RSINE1 SINE B4 -3 162 85 4 922 22 0 0 0 chr3 44299550 44299572 -115300211 + AT_rich Low_complexity Low_complexity 1 22 0 4 922 470 321 147 4 chr3 44299800 44300038 -115299745 - Lx5 LINE L1 -821 6229 5958 4 922 402 295 57 0 chr3 44300046 44300168 -115299615 + Lx5 LINE L1 6226 6354 -696 4 922 1104 322 130 78 chr3 44300170 44300824 -115298959 + Lx5 LINE L1 6455 7433 -27 4 922 341 93 19 0 chr3 44301326 44301380 -115298403 + (GAAA)n Simple_repeat Simple_repeat 2 56 0 4 922 1253 34 0 0 chr3 44301591 44301738 -115298045 - B1_Mm SINE Alu 0 147 1 4 923 202 241 123 130 chr3 44303738 44303900 -115295883 + L2c LINE L2 3222 3382 -5 4 923 209 263 0 19 chr3 44304211 44304308 -115295475 + A-rich Low_complexity Low_complexity 1 95 0 4 923 5574 79 13 9 chr3 44304665 44305789 -115293994 + L1Md_Gf LINE L1 367 1598 -4288 4 923 1335 117 12 1 chr3 44305833 44306046 -115293737 - L1_Mm LINE L1 -1439 4707 4462 4 923 5011 85 6 4 chr3 44306046 44306731 -115293052 + L1Md_F2 LINE L1 5885 6570 -12 4 923 1024 106 7 0 chr3 44307243 44307384 -115292399 - B1_Mus1 SINE Alu -5 143 2 4 923 475 172 0 0 chr3 44307564 44307657 -115292126 + L1_Mm LINE L1 3961 4053 -1830 4 923 251 135 0 0 chr3 44307658 44307695 -115292088 + L1Md_F2 LINE L1 190 226 -6393 4 923 31252 85 19 16 chr3 44307674 44312962 -115286821 + L1Md_F2 LINE L1 304 5588 -298 4 923 7609 66 6 2 chr3 44312963 44313940 -115285843 + L1Md_F2 LINE L1 5590 6570 -15 4 923 297 0 0 0 chr3 44313945 44313978 -115285805 + (TAAA)n Simple_repeat Simple_repeat 1 33 0 4 923 9302 166 26 12 chr3 44313986 44316904 -115282879 + Lx2 LINE L1 4033 6985 -12 4 923 22 35 0 0 chr3 44317095 44317124 -115282659 + AT_rich Low_complexity Low_complexity 1 29 0 4 923 701 332 60 67 chr3 44317316 44317767 -115282016 - Lx8 LINE L1 0 7473 7026 4 923 2483 232 72 39 chr3 44317767 44317912 -115281871 + RMER6D LTR ERVK 1 151 -569 4 923 2528 105 15 10 chr3 44317912 44318305 -115281478 - Lx2 LINE L1 0 6997 6603 4 923 2483 232 72 39 chr3 44318305 44318830 -115280953 + RMER6D LTR ERVK 152 693 -27 4 923 291 0 59 39 chr3 44318970 44319021 -115280762 + (TTTTG)n Simple_repeat Simple_repeat 1 52 0 4 923 5776 182 31 6 chr3 44319095 44320474 -115279309 - Lx4B LINE L1 -321 6737 5306 4 923 21 36 0 0 chr3 44321147 44321175 -115278608 + AT_rich Low_complexity Low_complexity 1 28 0 4 923 836 265 70 2 chr3 44321393 44321636 -115278147 + Lx3C LINE L1 6710 6975 -6 4 923 338 384 46 29 chr3 44322100 44322451 -115277332 - L1M5 LINE L1 -485 5679 5323 4 923 341 261 22 0 chr3 44322468 44322560 -115277223 + Lx9 LINE L1 7383 7476 -168 4 923 525 88 0 0 chr3 44322560 44322640 -115277143 + (TG)n Simple_repeat Simple_repeat 2 81 0 4 923 303 176 0 76 chr3 44322650 44322742 -115277041 + Lx9 LINE L1 7532 7616 -28 4 923 512 276 48 0 chr3 44322764 44322909 -115276874 + Lx9 LINE L1 6310 6461 -1183 4 923 240 185 19 0 chr3 44323066 44323120 -115276663 - L1M3 LINE L1 -2565 3575 3521 4 923 1829 191 8 22 chr3 44323786 44324150 -115275633 - RLTR15 LTR ERVK 0 359 1 4 923 28 0 0 0 chr3 44324603 44324631 -115275152 + AT_rich Low_complexity Low_complexity 1 28 0 4 923 29 0 0 0 chr3 44324940 44324969 -115274814 + AT_rich Low_complexity Low_complexity 1 29 0 4 923 252 233 14 14 chr3 44325416 44325490 -115274293 + (TA)n Simple_repeat Simple_repeat 2 75 0 4 923 301 206 70 150 chr3 44325567 44325623 -115274160 + Lx7 LINE L1 7511 7577 -119 4 923 822 106 0 0 chr3 44325623 44325746 -115274037 + (TA)n Simple_repeat Simple_repeat 1 123 0 4 923 301 206 70 150 chr3 44325746 44325889 -115273894 + Lx7 LINE L1 7578 7694 -2 4 923 26 30 0 0 chr3 44327148 44327181 -115272602 + AT_rich Low_complexity Low_complexity 1 33 0 4 923 21 0 0 0 chr3 44327261 44327282 -115272501 + AT_rich Low_complexity Low_complexity 1 21 0 4 923 871 341 16 10 chr3 44328731 44329119 -115270664 - Lx8 LINE L1 -551 6922 6533 4 923 457 310 31 12 chr3 44329132 44329292 -115270491 + Lx8 LINE L1 7071 7233 -240 4 923 23 54 0 0 chr3 44329464 44329501 -115270282 + AT_rich Low_complexity Low_complexity 1 37 0 4 923 1098 285 68 43 chr3 44329528 44329942 -115269841 - Lx6 LINE L1 -89 7371 6948 4 923 223 169 50 17 chr3 44330089 44330149 -115269634 + CT-rich Low_complexity Low_complexity 5 66 0 4 923 34 24 0 0 chr3 44330418 44330459 -115269324 + AT_rich Low_complexity Low_complexity 1 41 0 4 923 193 174 29 0 chr3 44330459 44330528 -115269255 + (TA)n Simple_repeat Simple_repeat 1 71 0 4 923 225 0 0 0 chr3 44331152 44331177 -115268606 + (TAAA)n Simple_repeat Simple_repeat 4 28 0 4 923 22 56 0 0 chr3 44331190 44331226 -115268557 + AT_rich Low_complexity Low_complexity 1 36 0 4 923 1647 149 89 3 chr3 44331915 44332231 -115267552 + IAPLTR2_Mm LTR ERVK 1 343 -132 4 923 3400 61 23 16 chr3 44332231 44332777 -115267006 + IAPEz-int LTR ERVK 188 662 -5819 4 923 2219 61 0 0 chr3 44332777 44333055 -115266728 + IAPEz-int LTR ERVK 1359 1636 -4845 4 923 6245 31 4 8 chr3 44333054 44333801 -115265982 + IAPEz-int LTR ERVK 5736 6479 -2 4 923 788 131 39 0 chr3 44333803 44333933 -115265850 + IAPLTR2b LTR ERVK 1 135 -192 4 923 29 47 0 0 chr3 44335108 44335151 -115264632 + AT_rich Low_complexity Low_complexity 1 43 0 4 923 185 0 40 0 chr3 44335261 44335286 -115264497 + (TTA)n Simple_repeat Simple_repeat 2 27 0 4 923 25 31 0 0 chr3 44335383 44335415 -115264368 + AT_rich Low_complexity Low_complexity 1 32 0 4 923 394 356 22 15 chr3 44336159 44336296 -115263487 + B3 SINE B2 3 140 -76 4 923 234 62 0 0 chr3 44336346 44336378 -115263405 + (TAA)n Simple_repeat Simple_repeat 3 34 0 4 923 735 193 14 28 chr3 44336620 44336764 -115263019 + B1_Mur4 SINE Alu 3 144 -6 4 923 260 247 0 38 chr3 44336772 44336852 -115262931 + GA-rich Low_complexity Low_complexity 4 80 0 4 923 531 170 0 0 chr3 44336900 44337000 -115262783 + GA-rich Low_complexity Low_complexity 2 101 0 4 923 297 0 0 0 chr3 44337054 44337087 -115262696 + (CAAAA)n Simple_repeat Simple_repeat 2 34 0 4 923 216 0 0 0 chr3 44337087 44337111 -115262672 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 4 923 310 260 27 63 chr3 44337121 44337232 -115262551 - Lx7 LINE L1 -384 7312 7206 4 923 5197 211 81 12 chr3 44337289 44339092 -115260691 + Lx4B LINE L1 5108 7053 -5 4 923 1179 190 42 40 chr3 44339677 44340043 -115259740 - L1_Mur2 LINE L1 -907 4970 4624 4 923 213 68 22 43 chr3 44340044 44340090 -115259693 + (TTTTG)n Simple_repeat Simple_repeat 4 48 0 4 923 472 212 78 9 chr3 44340164 44340310 -115259473 + L1_Mur3 LINE L1 4946 5100 -780 4 923 4184 127 3 0 chr3 44340310 44340918 -115258865 + L1Md_F2 LINE L1 346 955 -5661 4 923 5601 22 0 0 chr3 44340916 44341753 -115258030 - L1Md_T LINE L1 -511 6071 5235 4 923 4494 38 0 0 chr3 44341753 44342285 -115257498 + L1Md_T LINE L1 6051 6582 0 4 923 30306 95 3 5 chr3 44342303 44346046 -115253737 + L1Md_F2 LINE L1 940 4676 -1207 4 923 298 0 23 23 chr3 44346046 44346089 -115253694 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 4 923 30306 96 3 5 chr3 44346089 44347000 -115252783 + L1Md_F2 LINE L1 4677 5586 -297 4 923 7423 81 0 4 chr3 44347001 44348000 -115251783 + L1Md_F2 LINE L1 5588 6582 0 4 923 1645 228 18 6 chr3 44348008 44348428 -115251355 + L1_Mur3 LINE L1 5087 5533 -646 4 923 3277 253 69 20 chr3 44348425 44349219 -115250564 + Lx5 LINE L1 6210 7042 -8 4 923 301 265 62 9 chr3 44349358 44349463 -115250320 + PB1D10 SINE Alu 1 112 -8 4 923 22 0 0 0 chr3 44350468 44350490 -115249293 + AT_rich Low_complexity Low_complexity 1 22 0 4 923 182 37 37 0 chr3 44350783 44350810 -115248973 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 4 923 1047 282 87 26 chr3 44351213 44351671 -115248112 - RMER5 LTR ERV1 -48 486 1 4 923 183 100 0 0 chr3 44351701 44351731 -115248052 + (TAAA)n Simple_repeat Simple_repeat 4 33 0 4 923 311 242 97 19 chr3 44352184 44352322 -115247461 - L1MA4 LINE L1 -375 5925 5787 4 923 406 319 133 42 chr3 44352411 44352794 -115246989 + MTD LTR MaLR 1 418 -1 4 923 519 262 88 0 chr3 44352844 44353004 -115246779 + MTD LTR MaLR 1 174 -245 4 923 411 73 0 0 chr3 44354178 44354233 -115245550 + (TG)n Simple_repeat Simple_repeat 2 56 0 4 923 25 31 0 0 chr3 44354511 44354543 -115245240 + AT_rich Low_complexity Low_complexity 1 32 0 4 923 231 288 13 27 chr3 44354857 44354932 -115244851 + RMER15 LTR ERVL 344 417 -158 4 923 207 200 0 107 chr3 44355338 44355394 -115244389 + L4 LINE RTE 1696 1745 -284 4 923 25 65 0 0 chr3 44355600 44355646 -115244137 + AT_rich Low_complexity Low_complexity 1 46 0 4 923 7791 143 37 5 chr3 44356121 44357573 -115242210 + Lx3C LINE L1 5469 6974 -2 4 923 27 0 0 0 chr3 44357579 44357606 -115242177 + AT_rich Low_complexity Low_complexity 1 27 0 4 923 1123 220 38 54 chr3 44358053 44358366 -115241417 - Lx9 LINE L1 -540 7104 6797 4 923 539 221 86 15 chr3 44358367 44358565 -115241218 + Lx9 LINE L1 7433 7644 0 4 923 27 62 0 0 chr3 44360478 44360526 -115239257 + AT_rich Low_complexity Low_complexity 1 48 0 4 923 21 36 0 0 chr3 44360595 44360623 -115239160 + AT_rich Low_complexity Low_complexity 1 28 0 4 923 201 159 0 0 chr3 44361107 44361151 -115238632 + GA-rich Low_complexity Low_complexity 1 44 0 4 923 267 375 26 18 chr3 44361151 44361265 -115238518 - RSINE1 SINE B4 -7 158 44 4 923 26 64 0 0 chr3 44361312 44361359 -115238424 + AT_rich Low_complexity Low_complexity 1 47 0 4 923 378 0 0 0 chr3 44361705 44361747 -115238036 + (TC)n Simple_repeat Simple_repeat 1 42 0 4 923 450 0 0 0 chr3 44361747 44361796 -115237987 + (CA)n Simple_repeat Simple_repeat 1 50 0 5 923 573 250 45 107 chr3 44361803 44362027 -115237756 + RLTR25B LTR ERVK 814 1023 -5 5 923 272 27 0 26 chr3 44362724 44362762 -115237021 + (TTA)n Simple_repeat Simple_repeat 1 37 0 5 923 608 133 234 0 chr3 44362766 44362894 -115236889 - Lx3B LINE L1 -3 6970 6813 5 923 2127 51 4 7 chr3 44362903 44363180 -115236603 - L1Md_A LINE L1 0 6582 6307 5 923 39881 16 6 6 chr3 44363464 44369533 -115230250 - L1Md_A LINE L1 0 6582 521 5 923 7575 22 0 0 chr3 44369568 44370438 -115229345 - L1Md_A LINE L1 0 6582 5713 5 923 571 53 0 0 chr3 44370435 44370510 -115229273 - L1Md_A LINE L1 -6419 305 231 5 923 21 0 0 0 chr3 44370929 44370950 -115228833 + AT_rich Low_complexity Low_complexity 1 21 0 5 923 189 171 0 0 chr3 44371097 44371132 -115228651 + (TG)n Simple_repeat Simple_repeat 2 36 0 5 923 28 0 0 0 chr3 44371132 44371160 -115228623 + AT_rich Low_complexity Low_complexity 1 28 0 5 923 31 0 0 0 chr3 44371599 44371630 -115228153 + AT_rich Low_complexity Low_complexity 1 31 0 5 923 351 344 75 0 chr3 44371934 44372094 -115227689 + B3A SINE B2 5 176 -22 5 923 3008 223 58 43 chr3 44372400 44372539 -115227244 + L1_Mur3 LINE L1 1918 2053 -3827 5 923 315 0 0 0 chr3 44372539 44372574 -115227209 + (CA)n Simple_repeat Simple_repeat 2 36 0 5 923 3008 223 58 43 chr3 44372574 44372968 -115226815 + L1_Mur3 LINE L1 2054 2457 -3423 5 923 366 23 0 0 chr3 44372968 44373011 -115226772 + (CAAAA)n Simple_repeat Simple_repeat 3 45 0 5 923 3008 223 58 43 chr3 44373011 44373552 -115226231 + L1_Mur3 LINE L1 2458 3008 -2872 5 923 701 161 103 20 chr3 44373556 44373702 -115226081 - RLTR20A1 LTR ERVK -393 158 1 5 923 1623 254 51 28 chr3 44373702 44374135 -115225648 + Lx6 LINE L1 7004 7446 -14 5 923 3400 136 154 44 chr3 44374141 44374529 -115225254 + RMER17D2 LTR ERVK 1 394 -415 5 923 881 79 19 19 chr3 44374529 44374683 -115225100 + (TC)n Simple_repeat Simple_repeat 2 155 0 5 923 3400 136 154 44 chr3 44374683 44375023 -115224760 + RMER17D2 LTR ERVK 395 808 -1 5 923 26 0 0 0 chr3 44375027 44375053 -115224730 + AT_rich Low_complexity Low_complexity 1 26 0 5 923 219 69 0 0 chr3 44375053 44375082 -115224701 + (ATG)n Simple_repeat Simple_repeat 2 30 0 5 923 226 233 68 14 chr3 44376704 44376778 -115223005 - MIRb SINE MIR -99 169 92 5 923 1795 72 4 12 chr3 44377337 44377590 -115222193 - L1_Mus2 LINE L1 -2 6564 6314 5 923 23 92 0 0 chr3 44378234 44378299 -115221484 + AT_rich Low_complexity Low_complexity 1 65 0 5 923 21 36 0 0 chr3 44378323 44378351 -115221432 + AT_rich Low_complexity Low_complexity 1 28 0 5 923 1582 226 114 199 chr3 44378710 44379493 -115220290 - RMER6C LTR ERVK -25 731 5 5 923 22 0 0 0 chr3 44379893 44379915 -115219868 + AT_rich Low_complexity Low_complexity 1 22 0 5 923 393 22 0 0 chr3 44380857 44380903 -115218880 + (CA)n Simple_repeat Simple_repeat 1 46 0 5 923 3158 161 120 0 chr3 44380964 44381540 -115218243 + Lx4B LINE L1 6128 6772 -286 5 923 251 230 35 0 chr3 44381534 44381621 -115218162 + Lx4B LINE L1 6966 7055 -3 5 923 33 56 0 0 chr3 44381627 44381681 -115218102 + AT_rich Low_complexity Low_complexity 1 54 0 5 923 505 361 21 8 chr3 44381697 44381937 -115217846 - Lx7 LINE L1 -456 7240 6998 5 923 1068 77 65 6 chr3 44381944 44382114 -115217669 + L1_Mus3 LINE L1 6459 6638 0 5 923 1378 146 35 16 chr3 44382188 44382445 -115217338 + Lx LINE L1 6359 6620 -34 5 923 31 26 0 0 chr3 44382721 44382759 -115217024 + AT_rich Low_complexity Low_complexity 1 38 0 5 923 296 266 46 0 chr3 44385186 44385295 -115214488 - L1_Mur3 LINE L1 -6780 932 819 5 923 486 233 50 50 chr3 44385292 44385513 -115214270 + Lx7 LINE L1 7472 7692 -4 5 923 21 36 0 0 chr3 44385714 44385742 -115214041 + AT_rich Low_complexity Low_complexity 1 28 0 5 923 293 43 43 0 chr3 44385809 44385855 -115213928 + (TTTTG)n Simple_repeat Simple_repeat 3 50 0 5 923 21 0 0 0 chr3 44385980 44386001 -115213782 + AT_rich Low_complexity Low_complexity 1 21 0 5 923 1022 277 43 0 chr3 44386111 44386364 -115213419 - Lx9 LINE L1 -353 7291 7028 5 923 215 293 0 0 chr3 44386368 44386443 -115213340 + T-rich Low_complexity Low_complexity 67 141 0 5 923 206 167 0 20 chr3 44386465 44386514 -115213269 + (TTTG)n Simple_repeat Simple_repeat 2 49 0 5 923 547 161 24 56 chr3 44386516 44386641 -115213142 - Lx9 LINE L1 -617 7027 6907 5 923 392 283 122 11 chr3 44386692 44386971 -115212812 + Lx9 LINE L1 7334 7643 -1 5 923 365 373 91 59 chr3 44388025 44388498 -115211285 - MLT1D LTR MaLR -6 499 12 5 923 207 0 0 0 chr3 44388709 44388732 -115211051 + (TTGG)n Simple_repeat Simple_repeat 1 23 0 5 923 579 29 0 0 chr3 44388733 44388802 -115210981 + (TTTTA)n Simple_repeat Simple_repeat 2 70 0 5 923 21 71 0 0 chr3 44389173 44389215 -115210568 + AT_rich Low_complexity Low_complexity 1 42 0 5 923 186 367 64 0 chr3 44389402 44389511 -115210272 + MIR SINE MIR 45 160 -102 5 923 208 170 0 54 chr3 44389538 44389594 -115210189 + (TAA)n Simple_repeat Simple_repeat 1 53 0 5 923 237 65 0 0 chr3 44389805 44389836 -115209947 + (TTCC)n Simple_repeat Simple_repeat 2 32 0 5 923 390 42 0 0 chr3 44389833 44389881 -115209902 + (TTTA)n Simple_repeat Simple_repeat 1 48 0 5 923 1228 85 45 0 chr3 44389881 44390057 -115209726 - B2_Mm2 SINE B2 -9 186 3 5 923 471 367 42 46 chr3 44390263 44390737 -115209046 + Lx7 LINE L1 6537 7008 -688 5 923 21 0 0 0 chr3 44391341 44391362 -115208421 + AT_rich Low_complexity Low_complexity 1 21 0 5 923 26 0 0 0 chr3 44392098 44392124 -115207659 + AT_rich Low_complexity Low_complexity 1 26 0 5 923 21 0 0 0 chr3 44392521 44392542 -115207241 + AT_rich Low_complexity Low_complexity 1 21 0 5 923 1038 244 93 11 chr3 44392855 44393133 -115206650 - ORR1B2 LTR MaLR -66 301 1 5 923 32 0 0 0 chr3 44394542 44394574 -115205209 + AT_rich Low_complexity Low_complexity 1 32 0 5 923 1661 175 22 9 chr3 44395323 44395646 -115204137 - Lx LINE L1 0 6654 6328 5 923 330 87 0 0 chr3 44395829 44395875 -115203908 + (TG)n Simple_repeat Simple_repeat 1 46 0 5 923 945 309 62 0 chr3 44395920 44396273 -115203510 + MTE2b LTR MaLR 1 375 -4 5 923 25 0 0 0 chr3 44398233 44398258 -115201525 + AT_rich Low_complexity Low_complexity 1 25 0 5 923 29 70 0 0 chr3 44398747 44398804 -115200979 + AT_rich Low_complexity Low_complexity 1 57 0 5 923 3076 146 138 17 chr3 44399244 44399831 -115199952 - Lx3A LINE L1 -9 6972 6315 5 923 180 0 0 0 chr3 44399901 44399921 -115199862 + (T)n Simple_repeat Simple_repeat 1 20 0 5 923 1781 159 16 9 chr3 44400027 44400344 -115199439 - ORR1A2 LTR MaLR -8 319 1 5 923 200 146 0 77 chr3 44400397 44400449 -115199334 + (CAAAG)n Simple_repeat Simple_repeat 2 49 0 5 923 253 280 57 45 chr3 44400461 44400618 -115199165 - RMER17D LTR ERVK -492 397 239 5 923 4796 169 94 106 chr3 44400668 44402067 -115197716 + L1_Mur2 LINE L1 486 2048 -3829 5 923 351 0 0 0 chr3 44402067 44402106 -115197677 + (CA)n Simple_repeat Simple_repeat 2 40 0 5 923 4796 144 126 182 chr3 44402106 44403253 -115196530 + L1_Mur2 LINE L1 2049 2938 -2939 5 923 1415 164 0 4 chr3 44403286 44403531 -115196252 + Lx4A LINE L1 6814 7057 -1 5 923 222 208 0 0 chr3 44403655 44403708 -115196075 + T-rich Low_complexity Low_complexity 3 55 0 5 923 21 0 0 0 chr3 44404111 44404132 -115195651 + AT_rich Low_complexity Low_complexity 1 21 0 5 923 510 287 106 3 chr3 44404726 44405027 -115194756 - Lx9 LINE L1 -24 7620 7289 5 923 297 125 0 0 chr3 44406008 44406064 -115193719 + (TC)n Simple_repeat Simple_repeat 1 56 0 5 923 256 274 71 0 chr3 44407284 44407368 -115192415 - MER67D LTR ERV1 -417 97 8 5 923 23 54 0 0 chr3 44407752 44407789 -115191994 + AT_rich Low_complexity Low_complexity 1 37 0 5 923 2653 177 6 10 chr3 44409465 44409956 -115189827 - Lx2B LINE L1 0 7000 6512 5 923 27 62 0 0 chr3 44410129 44410177 -115189606 + AT_rich Low_complexity Low_complexity 1 48 0 5 923 21 0 0 0 chr3 44410445 44410466 -115189317 + AT_rich Low_complexity Low_complexity 1 21 0 5 923 24 32 0 0 chr3 44411203 44411234 -115188549 + AT_rich Low_complexity Low_complexity 1 31 0 5 923 579 293 85 15 chr3 44411837 44412038 -115187745 - B3 SINE B2 0 216 2 5 923 578 286 14 0 chr3 44412047 44412187 -115187596 - B1_Mur2 SINE Alu -2 147 6 5 923 209 164 36 0 chr3 44412493 44412548 -115187235 + (TA)n Simple_repeat Simple_repeat 1 57 0 5 923 208 245 0 20 chr3 44412628 44412678 -115187105 + (TG)n Simple_repeat Simple_repeat 2 50 0 5 923 580 344 85 24 chr3 44412681 44412928 -115186855 - B4A SINE B4 -2 290 29 5 923 24 0 0 0 chr3 44413452 44413476 -115186307 + AT_rich Low_complexity Low_complexity 1 24 0 5 923 254 327 78 31 chr3 44413548 44413804 -115185979 - L1MC3 LINE L1 -897 6985 6718 5 923 302 309 92 79 chr3 44414194 44414918 -115184865 - L1MC3 LINE L1 -1595 6190 5434 5 923 486 61 0 0 chr3 44414918 44414984 -115184799 + (TATG)n Simple_repeat Simple_repeat 3 68 0 5 923 3064 106 7 7 chr3 44415584 44416030 -115183753 - L1_Mus3 LINE L1 -6 6632 6187 5 923 7204 133 46 4 chr3 44416031 44417279 -115182504 - L1VL1 LINE L1 -321 3377 2078 5 923 2145 103 3 0 chr3 44417276 44417654 -115182129 - L1Md_A LINE L1 -4354 1529 1151 5 923 2111 71 0 21 chr3 44417648 44417934 -115181849 + L1_Mm LINE L1 5282 5561 -322 5 923 7142 11 0 0 chr3 44417935 44418745 -115181038 + L1Md_A LINE L1 4777 5586 -297 5 923 8682 19 0 0 chr3 44418745 44419739 -115180044 + L1Md_A LINE L1 5587 6580 -2 5 923 7615 59 14 10 chr3 44419775 44420762 -115179021 + L1Md_F2 LINE L1 5588 6578 -4 5 923 35 24 0 0 chr3 44420765 44420807 -115178976 + AT_rich Low_complexity Low_complexity 1 42 0 5 923 6554 149 29 25 chr3 44420807 44422889 -115176894 - L1VL1 LINE L1 -1605 2093 3 5 923 180 77 0 0 chr3 44423064 44423090 -115176693 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 5 923 4368 89 67 8 chr3 44423092 44423739 -115176044 - L1_Mus3 LINE L1 -14 6624 5940 5 923 181 138 0 0 chr3 44424012 44424041 -115175742 + L2 LINE L2 1488 1516 -1903 5 923 216 0 0 0 chr3 44425181 44425205 -115174578 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 5 923 804 180 35 18 chr3 44425205 44425375 -115174408 - Lx3A LINE L1 -13 6968 6796 6 923 4360 87 1 9 chr3 44425375 44426151 -115173632 + L1Md_F3 LINE L1 5248 6017 -550 6 923 35187 36 0 0 chr3 44426469 44431897 -115167886 + L1Md_T LINE L1 66 5589 -297 6 923 8944 5 1 0 chr3 44431897 44432950 -115166833 + L1Md_T LINE L1 5590 6585 0 6 115 3934 45 0 8 chr3 44433106 44433595 -115166188 + L1Md_F3 LINE L1 6099 6583 -1 6 924 1126 89 0 0 chr3 44433935 44434081 -115165702 + B1_Mm SINE Alu 2 147 0 6 924 4004 55 15 24 chr3 44434622 44435189 -115164594 - L1Md_F3 LINE L1 0 6584 6050 6 924 234 289 211 0 chr3 44436700 44436776 -115163007 - RSINE1 SINE B4 -62 103 12 6 924 1417 190 17 0 chr3 44437262 44437551 -115162232 - L1_Mur2 LINE L1 -441 5436 5143 6 924 1094 228 41 16 chr3 44437546 44437791 -115161992 + Lx2B LINE L1 6745 6995 -5 6 924 188 240 78 20 chr3 44438379 44438430 -115161353 + L3 LINE CR1 32 85 -4404 6 924 21 0 0 0 chr3 44438509 44438530 -115161253 + AT_rich Low_complexity Low_complexity 1 21 0 6 924 2956 216 39 39 chr3 44439382 44439493 -115160290 + RLTR17 LTR ERVK 18 126 -566 6 924 987 108 0 0 chr3 44439493 44439632 -115160151 + B1_Mus1 SINE Alu 1 139 -9 6 924 288 0 0 0 chr3 44439642 44439674 -115160109 + (CAAA)n Simple_repeat Simple_repeat 3 34 0 6 924 2956 202 31 49 chr3 44439674 44440210 -115159573 + RLTR17 LTR ERVK 127 671 -21 6 924 309 309 46 12 chr3 44440768 44441027 -115158756 - L1M4 LINE L1 -1714 4432 4165 6 924 3877 152 31 18 chr3 44441416 44442100 -115157683 - Lx2 LINE L1 -30 6967 6275 6 924 318 356 46 26 chr3 44442247 44442400 -115157383 - RSINE1 SINE B4 0 165 10 6 924 297 230 80 35 chr3 44442569 44442726 -115157057 + L1M3 LINE L1 5290 5455 -716 6 924 35 88 0 0 chr3 44442829 44442920 -115156863 + AT_rich Low_complexity Low_complexity 1 91 0 6 924 1745 247 87 24 chr3 44443264 44443940 -115155843 + Lx9 LINE L1 6913 7631 -13 6 924 900 38 0 44 chr3 44444100 44444237 -115155546 - L1Md_F3 LINE L1 -2 6582 6452 6 924 366 359 43 61 chr3 44444244 44444407 -115155376 + B4A SINE B4 9 168 -124 6 924 664 249 64 50 chr3 44444449 44444820 -115154963 + MT2B LTR ERVL 1 448 -153 6 924 321 185 0 0 chr3 44444846 44444911 -115154872 + (CATA)n Simple_repeat Simple_repeat 4 68 0 6 924 288 0 0 0 chr3 44445020 44445052 -115154731 + (CA)n Simple_repeat Simple_repeat 1 32 0 6 924 279 0 0 0 chr3 44445052 44445082 -115154701 + (TA)n Simple_repeat Simple_repeat 1 31 0 6 924 3077 92 0 39 chr3 44445406 44445870 -115153913 + L1_Mus4 LINE L1 6190 6635 -1 6 924 553 61 12 12 chr3 44446407 44446490 -115153293 + (TTCC)n Simple_repeat Simple_repeat 2 84 0 6 924 663 48 0 0 chr3 44446604 44446687 -115153096 + (TG)n Simple_repeat Simple_repeat 2 84 0 6 924 554 0 15 0 chr3 44446689 44446755 -115153028 + (GA)n Simple_repeat Simple_repeat 1 67 0 6 924 204 125 0 0 chr3 44447526 44447558 -115152225 + (CA)n Simple_repeat Simple_repeat 1 32 0 6 924 394 370 91 16 chr3 44447985 44448172 -115151611 + ID_B1 SINE B4 7 207 -17 6 924 210 37 0 0 chr3 44448239 44448266 -115151517 + (TTG)n Simple_repeat Simple_repeat 1 27 0 6 924 911 130 7 42 chr3 44448267 44448411 -115151372 - B1_Mus1 SINE Alu -7 141 3 6 924 56 95 0 0 chr3 44448803 44448971 -115150812 + AT_rich Low_complexity Low_complexity 1 168 0 6 924 30 27 0 0 chr3 44449009 44449046 -115150737 + AT_rich Low_complexity Low_complexity 1 37 0 6 924 24 32 0 0 chr3 44449077 44449108 -115150675 + AT_rich Low_complexity Low_complexity 1 31 0 6 924 290 152 0 17 chr3 44449200 44449260 -115150523 + (TA)n Simple_repeat Simple_repeat 1 59 0 6 924 746 292 152 12 chr3 44450099 44450401 -115149382 + Lx7 LINE L1 6815 7158 -538 6 924 855 59 0 0 chr3 44450401 44450519 -115149264 + (CA)n Simple_repeat Simple_repeat 1 118 0 6 924 746 292 152 12 chr3 44450519 44450552 -115149231 + Lx7 LINE L1 7159 7196 -500 6 924 2336 66 119 11 chr3 44450552 44450904 -115148879 + RLTR10 LTR ERVK 1 390 0 6 924 2167 20 0 0 chr3 44450904 44451153 -115148630 + RLTR10-int LTR ERVK 302 550 -1437 6 924 4652 21 55 3 chr3 44451152 44451718 -115148065 + RLTR10-int LTR ERVK 404 998 -989 6 924 330 240 62 39 chr3 44451782 44451912 -115147871 + RLTR10-int LTR ERVK 1462 1594 -5987 6 924 1154 35 0 0 chr3 44451994 44452135 -115147648 + RLTR10-int LTR ERVK 990 1130 -857 6 924 1864 99 31 22 chr3 44452135 44452454 -115147329 + RLTRETN_Mm LTR ERVK 1 322 0 6 924 29051 20 4 3 chr3 44452454 44455762 -115144021 + ETnERV-int LTR ERVK 1 3312 -2 6 924 1765 100 35 22 chr3 44455764 44456082 -115143701 + RLTRETN_Mm LTR ERVK 1 322 0 6 924 7448 30 0 1 chr3 44456082 44456943 -115142840 + RLTR10-int LTR ERVK 1125 1984 -3 6 924 430 230 12 144 chr3 44456974 44457147 -115142636 + Lx7 LINE L1 7192 7341 -355 6 924 204 97 0 0 chr3 44457179 44457210 -115142573 + (TTGG)n Simple_repeat Simple_repeat 1 31 0 6 924 556 234 95 87 chr3 44457255 44457404 -115142379 + Lx7 LINE L1 7323 7482 -214 6 924 210 37 0 0 chr3 44457404 44457431 -115142352 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 6 924 556 234 95 87 chr3 44457431 44457650 -115142133 + Lx7 LINE L1 7483 7694 -2 6 924 29368 101 34 9 chr3 44457751 44463061 -115136722 + L1Md_F2 LINE L1 145 5585 -298 6 924 7135 83 11 2 chr3 44463062 44463097 -115136686 + L1Md_F2 LINE L1 5587 5621 -961 6 924 3281 188 44 49 chr3 44463097 44463952 -115135831 - RLTR13A LTR ERVK -4 851 1 6 924 7135 83 11 2 chr3 44463952 44464901 -115134882 + L1Md_F2 LINE L1 5622 6579 -3 6 924 922 370 67 25 chr3 44464954 44465699 -115134084 + Lx8 LINE L1 6550 7325 -148 6 924 414 132 0 0 chr3 44465704 44465780 -115134003 + (TTG)n Simple_repeat Simple_repeat 2 77 0 6 924 242 0 0 0 chr3 44465895 44465922 -115133861 + Lx LINE L1 5878 5904 -750 6 924 28 48 0 0 chr3 44466740 44466782 -115133001 + AT_rich Low_complexity Low_complexity 1 42 0 6 924 4203 106 24 8 chr3 44467052 44468186 -115131597 + L1_Mus2 LINE L1 5927 6518 -48 6 924 1139 62 0 0 chr3 44468188 44468332 -115131451 - ORR1A0 LTR MaLR -42 304 161 6 924 371 37 0 18 chr3 44468332 44468387 -115131396 + L1_Mus2 LINE L1 6513 6566 0 6 924 963 162 0 30 chr3 44468387 44468407 -115131376 - ORR1A3 LTR MaLR -185 141 125 6 924 467 292 44 44 chr3 44468429 44468701 -115131082 + Lx7 LINE L1 5875 6146 -1550 6 924 3728 166 34 82 chr3 44468676 44469274 -115130509 + L1_Mus4 LINE L1 4493 5113 -770 6 924 1000 110 14 0 chr3 44469274 44469419 -115130364 + B1_Mus1 SINE Alu 2 148 0 6 924 3728 166 34 82 chr3 44469419 44469665 -115130118 + L1_Mus4 LINE L1 5114 5297 -586 6 924 35298 36 0 1 chr3 44469673 44475338 -115124445 + L1Md_T LINE L1 1 5589 -297 6 924 8919 8 0 0 chr3 44475338 44476334 -115123449 + L1Md_T LINE L1 5590 6585 0 6 924 6790 120 23 3 chr3 44476344 44477639 -115122144 + L1_Mus4 LINE L1 5303 6618 -18 6 924 2626 255 42 87 chr3 44477645 44478486 -115121297 + Lx6 LINE L1 6110 6919 -541 6 924 409 95 0 0 chr3 44478486 44478595 -115121188 + L1_Mus4 LINE L1 6563 6636 0 6 924 3045 64 18 2 chr3 44478604 44478998 -115120785 - MTB LTR MaLR 0 400 1 6 924 2626 255 42 87 chr3 44478998 44479068 -115120715 + Lx6 LINE L1 6923 6990 -470 6 924 1896 174 44 47 chr3 44480353 44480805 -115118978 + Lx4B LINE L1 6604 7054 -4 6 924 299 156 31 0 chr3 44480807 44480871 -115118912 + (TAAA)n Simple_repeat Simple_repeat 3 68 0 6 924 501 369 14 19 chr3 44480880 44481087 -115118696 + B3 SINE B2 11 216 0 6 924 204 188 0 86 chr3 44481946 44482016 -115117767 + (TTTAA)n Simple_repeat Simple_repeat 5 68 0 6 924 255 221 0 0 chr3 44482162 44482248 -115117535 + (TA)n Simple_repeat Simple_repeat 2 87 0 6 924 8117 46 1 2 chr3 44482952 44483994 -115115789 - L1Md_F2 LINE L1 -2 6580 5540 6 924 23 0 0 0 chr3 44484413 44484436 -115115347 + AT_rich Low_complexity Low_complexity 1 23 0 6 924 360 133 0 0 chr3 44484627 44484687 -115115096 + (TA)n Simple_repeat Simple_repeat 2 61 0 6 924 2516 195 24 12 chr3 44484807 44485300 -115114483 + RLTR11A LTR ERVK 1 499 -29 6 924 691 218 14 0 chr3 44485498 44485645 -115114138 - Lx2 LINE L1 -1 6996 6848 6 924 6756 135 26 29 chr3 44485639 44486861 -115112922 - Lx2 LINE L1 -291 6706 5474 6 924 253 301 23 6 chr3 44486867 44487041 -115112742 + (TA)n Simple_repeat Simple_repeat 2 178 0 6 924 1039 110 7 0 chr3 44487078 44487224 -115112559 + B1_Mus1 SINE Alu 1 147 -1 6 924 357 24 0 0 chr3 44487421 44487463 -115112320 + (TTTA)n Simple_repeat Simple_repeat 2 43 0 6 924 373 196 10 0 chr3 44487463 44487560 -115112223 - Lx4A LINE L1 -5 7053 6956 6 924 31 0 0 0 chr3 44487637 44487668 -115112115 + AT_rich Low_complexity Low_complexity 1 31 0 6 924 2173 83 76 15 chr3 44487688 44488017 -115111766 - Lx3_Mus LINE L1 -120 6889 6541 6 924 1986 75 4 4 chr3 44488011 44488280 -115111503 + Lx3_Mus LINE L1 6277 6545 -464 6 924 392 215 16 47 chr3 44488451 44488578 -115111205 + Lx9 LINE L1 7500 7622 -22 6 924 2412 146 24 5 chr3 44488910 44489324 -115110459 - BGLII_Mus LTR ERVK 0 422 1 6 924 287 197 0 116 chr3 44489665 44489734 -115110049 - RLTR23 LTR ERV1 -4 426 366 6 924 421 214 12 0 chr3 44490053 44490137 -115109646 - RLTR23 LTR ERV1 -340 90 6 6 924 229 260 93 74 chr3 44490919 44491027 -115108756 + RLTR30 LTR ERV1 188 297 -82 6 924 292 361 153 0 chr3 44491320 44491464 -115108319 - B3 SINE B2 0 216 51 6 924 353 81 0 16 chr3 44491912 44491975 -115107808 + (GA)n Simple_repeat Simple_repeat 2 63 0 6 924 308 373 60 39 chr3 44492429 44492663 -115107120 - MLT1G1 LTR MaLR -338 241 3 6 924 227 378 22 0 chr3 44493153 44493243 -115106540 - MTE2a LTR MaLR -228 151 60 6 924 267 197 16 32 chr3 44493277 44493340 -115106443 - MTE2a LTR MaLR -317 62 1 6 924 3691 100 63 0 chr3 44493513 44494053 -115105730 - Lx LINE L1 -315 6339 5766 6 924 832 153 0 0 chr3 44494055 44494205 -115105578 + Lx LINE L1 6502 6651 -3 6 924 428 297 75 16 chr3 44494411 44494599 -115105184 - Lx8 LINE L1 -463 7010 6812 6 924 460 212 75 7 chr3 44495140 44495287 -115104496 + MERVL_2A-int LTR ERVL 5605 5761 0 6 924 538 268 120 52 chr3 44495287 44495691 -115104092 + MT2B LTR ERVL 1 488 -113 6 924 468 0 0 0 chr3 44495691 44495743 -115104040 + (TAGA)n Simple_repeat Simple_repeat 3 54 0 6 924 275 292 0 92 chr3 44495743 44495766 -115104017 + MT2B LTR ERVL 401 422 -111 6 924 378 255 46 72 chr3 44495885 44496037 -115103746 + B1_Mus1 SINE Alu 1 148 0 6 924 742 262 106 14 chr3 44496118 44496335 -115103448 + MTD LTR MaLR 1 237 -182 6 924 7258 218 37 13 chr3 44496550 44496971 -115102812 - L1_Mur2 LINE L1 -249 5628 5180 6 924 3945 58 6 0 chr3 44496971 44497469 -115102314 - L1Md_F2 LINE L1 -1 6581 6081 6 924 7258 218 37 13 chr3 44497469 44498771 -115101012 - L1_Mur2 LINE L1 -698 5179 3864 6 924 363 23 0 0 chr3 44498771 44498815 -115100968 + (TG)n Simple_repeat Simple_repeat 2 45 0 6 924 7258 218 37 13 chr3 44498815 44498831 -115100952 - L1_Mur2 LINE L1 -2014 3863 3848 6 924 253 151 0 0 chr3 44498882 44498926 -115100857 - B1F2 SINE Alu -104 44 1 6 924 1870 260 44 5 chr3 44498927 44499523 -115100260 - L1_Mur2 LINE L1 -2828 3049 2431 6 924 610 210 62 6 chr3 44499527 44499704 -115100079 - L1_Mur2 LINE L1 -4245 1635 1449 6 924 471 35 0 0 chr3 44499922 44499979 -115099804 + (TA)n Simple_repeat Simple_repeat 1 57 0 6 924 34 0 0 0 chr3 44500718 44500752 -115099031 + AT_rich Low_complexity Low_complexity 1 34 0 1 924 210 128 0 0 chr3 44500752 44500791 -115098992 + (TG)n Simple_repeat Simple_repeat 2 40 0 2 924 307 197 0 62 chr3 44500862 44500927 -115098856 - B3A SINE B2 -137 61 1 3 924 204 212 58 12 chr3 44501816 44501902 -115097881 + (TA)n Simple_repeat Simple_repeat 2 91 0 4 924 234 422 10 0 chr3 44502225 44502327 -115097456 + ID_B1 SINE B4 2 104 -120 5 924 271 330 0 0 chr3 44502329 44502417 -115097366 - B2_Mm2 SINE B2 -104 91 4 6 924 24 53 0 0 chr3 44502458 44502496 -115097287 + AT_rich Low_complexity Low_complexity 1 38 0 7 924 25 31 0 0 chr3 44505569 44505601 -115094182 + AT_rich Low_complexity Low_complexity 1 32 0 8 924 25 0 0 0 chr3 44507392 44507417 -115092366 + AT_rich Low_complexity Low_complexity 1 25 0 9 924 3110 122 6 8 chr3 44507439 44507927 -115091856 - Lx2 LINE L1 -1 6996 6510 1 924 31 58 0 0 chr3 44508199 44508251 -115091532 + AT_rich Low_complexity Low_complexity 1 52 0 1 924 667 283 27 16 chr3 44509084 44509267 -115090516 + B3 SINE B2 25 209 -7 1 924 287 375 9 9 chr3 44510585 44510698 -115089085 + B3 SINE B2 37 149 -67 1 924 2499 82 9 0 chr3 44510951 44511294 -115088489 - L1_Mus2 LINE L1 -1 6565 6220 1 924 216 367 141 22 chr3 44511581 44511673 -115088110 + RSINE1 SINE B4 2 104 -61 1 924 327 49 0 0 chr3 44511682 44511723 -115088060 + (CATA)n Simple_repeat Simple_repeat 4 44 0 1 924 549 338 9 59 chr3 44511765 44511985 -115087798 + B3 SINE B2 2 210 -6 1 924 616 346 45 35 chr3 44512053 44512367 -115087416 - MTE2b LTR MaLR -2 377 61 1 924 2851 206 34 28 chr3 44513152 44513836 -115085947 + Lx7 LINE L1 6709 7396 -300 1 924 362 371 56 49 chr3 44514024 44514310 -115085473 - RMER15 LTR ERVL -14 561 274 2 924 331 287 69 115 chr3 44514379 44514639 -115085144 - Lx8 LINE L1 -377 7096 6849 2 924 3041 97 7 5 chr3 44514970 44515397 -115084386 + L1_Mus4 LINE L1 6187 6614 -22 2 924 39 50 0 0 chr3 44516540 44516600 -115083183 + AT_rich Low_complexity Low_complexity 1 60 0 2 924 327 405 66 18 chr3 44517119 44517345 -115082438 + ORR1E LTR MaLR 5 241 -118 2 924 4678 127 38 19 chr3 44517399 44517750 -115082033 - RMER17D2 LTR ERVK 0 809 456 2 924 249 33 0 0 chr3 44517750 44517780 -115082003 + (GA)n Simple_repeat Simple_repeat 1 30 0 2 924 4678 127 38 19 chr3 44517780 44518222 -115081561 - RMER17D2 LTR ERVK -354 455 1 2 924 204 67 0 0 chr3 44518260 44518290 -115081493 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 2 924 21 89 0 0 chr3 44518488 44518544 -115081239 + AT_rich Low_complexity Low_complexity 1 56 0 2 924 203 310 0 0 chr3 44518701 44518759 -115081024 + (CA)n Simple_repeat Simple_repeat 2 59 0 2 924 666 162 0 7 chr3 44519657 44519794 -115079989 + Lx2B LINE L1 6853 6988 -12 3 924 1036 43 7 7 chr3 44519796 44519935 -115079848 + (GAA)n Simple_repeat Simple_repeat 3 141 0 3 924 23 78 0 0 chr3 44520088 44520139 -115079644 + AT_rich Low_complexity Low_complexity 1 51 0 3 924 1524 194 14 69 chr3 44520194 44520554 -115079229 + ORR1B1 LTR MaLR 47 386 -8 3 924 374 22 0 0 chr3 44521404 44521450 -115078333 - MusHAL1 LINE L1 -2304 408 363 3 924 1867 89 11 8 chr3 44521450 44521711 -115078072 + L1_Mus3 LINE L1 6338 6599 -39 3 924 184 73 0 89 chr3 44521728 44521773 -115078010 + (TTTA)n Simple_repeat Simple_repeat 4 44 0 3 924 258 32 0 0 chr3 44521778 44521809 -115077974 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 3 924 1495 115 280 4 chr3 44521809 44522080 -115077703 - Lx3A LINE L1 -13 6968 6623 3 924 2015 215 24 28 chr3 44522550 44523132 -115076651 + Lx3C LINE L1 6414 6986 -11 3 924 205 176 0 0 chr3 44523134 44523168 -115076615 + (CAA)n Simple_repeat Simple_repeat 3 36 0 4 924 2495 259 228 7 chr3 44523178 44524417 -115075366 - L1_Mur3 LINE L1 -449 5431 3919 4 924 1282 211 110 11 chr3 44524417 44524699 -115075084 - ORR1B1 LTR MaLR -84 310 1 4 924 553 322 34 65 chr3 44524699 44524960 -115074823 - MT2B LTR ERVL -88 513 261 4 924 427 311 81 53 chr3 44525750 44526110 -115073673 + L1M2 LINE L1 2767 3136 -3007 4 924 359 315 88 16 chr3 44526812 44527177 -115072606 + L1M2 LINE L1 4495 4885 -1258 4 924 369 370 0 0 chr3 44528085 44528231 -115071552 - ID_B1 SINE B4 0 224 79 4 924 369 340 68 74 chr3 44528318 44528629 -115071154 - ORR1E LTR MaLR -4 355 47 4 924 938 173 52 0 chr3 44528629 44528802 -115070981 - Lx4A LINE L1 -772 6286 6105 4 924 24 53 0 0 chr3 44528809 44528847 -115070936 + AT_rich Low_complexity Low_complexity 1 38 0 4 924 245 75 29 106 chr3 44529731 44529835 -115069948 + A-rich Low_complexity Low_complexity 5 100 0 4 924 485 202 185 5 chr3 44529842 44530031 -115069752 + Lx6 LINE L1 3514 3736 -2144 5 924 3708 231 72 26 chr3 44530033 44531832 -115067951 + Lx6 LINE L1 4911 6795 -665 5 924 513 0 0 0 chr3 44531865 44531922 -115067861 + (GA)n Simple_repeat Simple_repeat 2 58 0 5 924 602 326 0 6 chr3 44531922 44532098 -115067685 + Lx6 LINE L1 6916 7090 -370 5 924 444 36 0 0 chr3 44532099 44532133 -115067650 + (CA)n Simple_repeat Simple_repeat 2 35 0 5 924 477 0 0 0 chr3 44532133 44532186 -115067597 + (TA)n Simple_repeat Simple_repeat 1 53 0 5 924 444 36 0 0 chr3 44532186 44532207 -115067576 + (CA)n Simple_repeat Simple_repeat 2 22 0 5 924 284 225 0 91 chr3 44532408 44532496 -115067287 + Lx7 LINE L1 7390 7469 -227 5 924 3080 214 72 58 chr3 44532803 44533428 -115066355 + L1_Mur3 LINE L1 2979 3592 -2288 5 924 5313 104 18 32 chr3 44533428 44534245 -115065538 - RLTR13C2 LTR ERVK 0 808 3 5 924 3080 214 72 58 chr3 44534245 44534449 -115065334 + L1_Mur3 LINE L1 3593 3788 -2092 5 924 1517 69 0 0 chr3 44534449 44534651 -115065132 + L1_Mus1 LINE L1 6365 6566 -1 5 924 3080 214 72 58 chr3 44534651 44534911 -115064872 + L1_Mur3 LINE L1 3789 4084 -1796 5 924 1215 251 94 92 chr3 44534911 44535381 -115064402 - RLTR1B LTR ERV1 0 512 1 5 924 389 252 0 34 chr3 44535381 44535500 -115064283 + L1_Mur3 LINE L1 4080 4194 -1683 5 924 25797 172 43 13 chr3 44535506 44543147 -115056636 + L1_Mus3 LINE L1 378 6633 -5 6 924 2116 258 128 46 chr3 44543187 44543930 -115055853 + RMER1B Other Other 45 848 -218 6 924 231 114 0 0 chr3 44543942 44543977 -115055806 + (GGA)n Simple_repeat Simple_repeat 2 36 0 6 924 848 62 0 68 chr3 44543977 44544169 -115055614 + (GGGGA)n Simple_repeat Simple_repeat 2 180 0 6 924 450 53 0 0 chr3 44544171 44544228 -115055555 + (GGGAA)n Simple_repeat Simple_repeat 5 61 0 6 924 374 342 20 0 chr3 44544240 44544389 -115055394 + RMER1B Other Other 862 1013 -53 6 924 1096 268 136 11 chr3 44544417 44544852 -115054931 + L1_Mus3 LINE L1 5794 6282 -1178 6 924 776 330 42 16 chr3 44544845 44545366 -115054417 + L1_Mus3 LINE L1 6455 6902 -558 6 924 1602 215 113 74 chr3 44545369 44545753 -115054030 + L1_Mur3 LINE L1 4181 4624 -1256 5 924 272 27 0 26 chr3 44545753 44545791 -115053992 + (CA)n Simple_repeat Simple_repeat 2 38 0 6 924 1602 215 113 74 chr3 44545791 44545829 -115053954 + L1_Mur3 LINE L1 4625 4642 -1238 5 924 240 59 0 0 chr3 44545829 44545863 -115053920 + (CAA)n Simple_repeat Simple_repeat 3 36 0 6 924 1602 215 113 74 chr3 44545863 44546091 -115053692 + L1_Mur3 LINE L1 4643 4858 -1022 5 924 354 173 40 0 chr3 44546176 44546251 -115053532 - L1_Mur3 LINE L1 -1690 4190 4113 6 924 857 119 0 0 chr3 44546522 44546640 -115053143 + B1_Mm SINE Alu 1 118 -29 6 924 443 73 15 0 chr3 44547043 44547111 -115052672 + (TAGA)n Simple_repeat Simple_repeat 2 70 0 6 924 1827 101 50 7 chr3 44548387 44548667 -115051116 - L1Md_F2 LINE L1 -3 6579 6288 7 924 2994 42 0 0 chr3 44548667 44549028 -115050755 + L1Md_F2 LINE L1 5812 6172 -410 7 924 6747 178 58 36 chr3 44549053 44551373 -115048410 - L1_Mus4 LINE L1 -80 6917 4631 7 924 297 0 0 0 chr3 44551373 44551406 -115048377 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 7 924 6747 175 32 37 chr3 44551406 44551481 -115048302 - L1_Mus4 LINE L1 -1253 4630 4533 7 924 399 242 96 122 chr3 44551854 44552068 -115047715 - RMER12 LTR ERVK -103 1219 1010 7 924 846 0 0 0 chr3 44552068 44552162 -115047621 + (GGAAA)n Simple_repeat Simple_repeat 5 98 0 7 924 399 242 96 122 chr3 44552162 44552177 -115047606 - RMER12 LTR ERVK -313 1009 996 7 924 245 236 31 41 chr3 44552178 44552249 -115047534 + GA-rich Low_complexity Low_complexity 4 75 0 7 924 1224 101 0 0 chr3 44552249 44552427 -115047356 + (GGAGA)n Simple_repeat Simple_repeat 3 180 0 7 924 245 236 31 41 chr3 44552427 44552452 -115047331 + polypurine Low_complexity Low_complexity 76 99 0 7 924 1266 279 83 86 chr3 44552500 44553336 -115046447 - RMER12 LTR ERVK -1006 802 1 7 924 2209 258 33 27 chr3 44554285 44554868 -115044915 + RMER1B Other Other 464 1049 -17 7 924 2672 66 9 0 chr3 44554991 44555340 -115044443 - L1_Mus1 LINE L1 0 6567 6216 8 924 464 89 0 1 chr3 44555340 44555403 -115044380 + L1_Mus1 LINE L1 6122 6186 -396 8 924 231 36 0 0 chr3 44555412 44555440 -115044343 + (T)n Simple_repeat Simple_repeat 1 28 0 8 924 1030 116 0 52 chr3 44555440 44555595 -115044188 - B1_Mus2 SINE Alu 0 147 1 8 924 377 339 17 0 chr3 44555753 44555868 -115043915 - ID_B1 SINE B4 -9 215 99 8 924 2924 48 0 0 chr3 44557008 44557360 -115042423 - IAP-d-int LTR ERVK -3003 3539 3188 8 924 5136 69 23 67 chr3 44557419 44558200 -115041583 - IAP-d-int LTR ERVK -5795 747 1 8 924 2371 109 3 68 chr3 44558200 44558584 -115041199 - RLTR10D LTR ERVK 0 359 1 8 924 10917 109 40 72 chr3 44558584 44559030 -115040753 - L1VL4 LINE L1 -699 2860 2438 8 924 274 23 23 23 chr3 44559030 44559074 -115040709 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 8 924 10917 123 41 61 chr3 44559074 44561347 -115038436 - L1VL4 LINE L1 -1122 2437 199 8 924 19076 62 15 3 chr3 44561699 44564135 -115035648 + IAP-d-int LTR ERVK 3557 6021 -521 8 115 3398 58 0 0 chr3 44564138 44564553 -115035230 + IAP-d-int LTR ERVK 6128 6542 0 8 925 2152 140 3 75 chr3 44564553 44564940 -115034843 + RLTR10D LTR ERVK 1 359 0 8 925 7887 193 10 15 chr3 44564940 44566580 -115033203 + L1_Mur2 LINE L1 3206 4837 -1040 8 925 22 0 0 0 chr3 44567356 44567378 -115032405 + AT_rich Low_complexity Low_complexity 1 22 0 8 925 263 28 28 0 chr3 44567923 44567959 -115031824 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 9 925 908 66 88 0 chr3 44567966 44568102 -115031681 - B1_Mus1 SINE Alu 0 148 1 9 925 398 273 8 8 chr3 44568835 44568968 -115030815 - Lx9 LINE L1 -2 7642 7510 9 925 27 0 0 0 chr3 44569492 44569519 -115030264 + AT_rich Low_complexity Low_complexity 1 27 0 9 925 189 0 0 0 chr3 44569862 44569883 -115029900 + (CA)n Simple_repeat Simple_repeat 2 22 0 9 925 546 146 0 0 chr3 44569883 44569993 -115029790 + (GA)n Simple_repeat Simple_repeat 1 110 0 9 925 267 103 0 0 chr3 44571364 44571403 -115028380 + (CA)n Simple_repeat Simple_repeat 2 40 0 9 925 438 94 35 0 chr3 44572164 44572249 -115027534 - Lx LINE L1 -7 6647 6560 9 925 355 224 0 274 chr3 44573803 44573938 -115025845 - RLTR20C LTR ERVK 0 578 481 9 925 288 0 0 0 chr3 44573939 44573971 -115025812 + (CA)n Simple_repeat Simple_repeat 2 33 0 9 925 1163 190 230 55 chr3 44573971 44574347 -115025436 - RLTR20C LTR ERVK -90 444 3 9 925 23 54 0 0 chr3 44574359 44574396 -115025387 + AT_rich Low_complexity Low_complexity 1 37 0 1 925 22 0 0 0 chr3 44574650 44574672 -115025111 + AT_rich Low_complexity Low_complexity 1 22 0 1 925 1026 110 0 0 chr3 44574673 44574818 -115024965 - B1_Mus1 SINE Alu -3 145 1 1 925 239 328 23 15 chr3 44575244 44575374 -115024409 - MurSatRep1 Unknown Unknown -1392 745 615 1 925 458 312 31 37 chr3 44575489 44575652 -115024131 + B3 SINE B2 1 162 -54 1 925 18974 100 8 8 chr3 44575689 44577023 -115022760 + L1_Mm LINE L1 2800 4132 -1751 1 925 462 18 0 0 chr3 44577023 44577078 -115022705 + (GA)n Simple_repeat Simple_repeat 2 56 0 1 925 18974 100 8 8 chr3 44577078 44578529 -115021254 + L1_Mm LINE L1 4133 5586 -297 1 925 7273 83 1 12 chr3 44578529 44579523 -115020260 + L1Md_F2 LINE L1 5588 6570 -12 1 925 8053 176 11 5 chr3 44579525 44581193 -115018590 + Lx2B LINE L1 5317 6991 -9 1 925 510 17 0 0 chr3 44582105 44582164 -115017619 + (TG)n Simple_repeat Simple_repeat 2 60 0 1 925 234 81 0 0 chr3 44582336 44582373 -115017410 + (TTCA)n Simple_repeat Simple_repeat 3 39 0 1 925 236 355 45 9 chr3 44583528 44583639 -115016144 - MLT1A1 LTR MaLR -293 115 1 1 925 30 69 0 0 chr3 44583796 44583854 -115015929 + AT_rich Low_complexity Low_complexity 1 58 0 1 925 252 0 0 0 chr3 44584007 44584035 -115015748 + (TA)n Simple_repeat Simple_repeat 1 28 0 1 925 552 368 106 29 chr3 44584293 44584906 -115014877 + Lx8 LINE L1 6269 6928 -545 1 925 5176 74 0 0 chr3 44584964 44585636 -115014147 + L1Md_F2 LINE L1 4915 5586 -297 1 925 7465 66 12 1 chr3 44585636 44586619 -115013164 + L1Md_F2 LINE L1 5587 6580 -2 1 925 411 177 186 0 chr3 44587089 44587213 -115012570 + Lx9 LINE L1 7431 7577 -67 1 925 420 20 0 0 chr3 44588049 44588098 -115011685 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 925 225 154 0 0 chr3 44588653 44588692 -115011091 + (TATATG)n Simple_repeat Simple_repeat 4 42 0 1 925 312 70 0 0 chr3 44588692 44588735 -115011048 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 925 519 378 45 32 chr3 44588936 44589313 -115010470 - MTD LTR MaLR -20 399 18 1 925 181 328 17 0 chr3 44589806 44589864 -115009919 - MIRb SINE MIR -9 259 201 1 925 465 280 73 63 chr3 44590167 44590373 -115009410 - B3 SINE B2 0 216 9 1 925 1088 241 16 55 chr3 44590381 44590692 -115009091 - L1_Rod LINE L1 -173 5674 5376 1 925 211 189 0 0 chr3 44590692 44590729 -115009054 - B4A SINE B4 -204 88 52 1 925 2965 173 119 19 chr3 44590751 44591380 -115008403 + RLTR17 LTR ERVK 1 692 0 1 925 726 190 25 126 chr3 44591397 44591596 -115008187 + RLTR17 LTR ERVK 514 692 0 1 925 380 150 0 0 chr3 44591596 44591656 -115008127 + RMER3D-int LTR ERVK 1 60 -2782 1 925 232 191 0 45 chr3 44591699 44591743 -115008040 + RLTR17 LTR ERVK 651 692 0 1 925 1670 201 52 8 chr3 44591929 44592311 -115007472 + Lx6 LINE L1 5114 5512 -368 1 925 3797 274 43 15 chr3 44592305 44592927 -115006856 + Lx6 LINE L1 5764 6388 -1072 1 925 360 0 0 0 chr3 44592927 44592967 -115006816 + (CAAAA)n Simple_repeat Simple_repeat 2 41 0 1 925 3797 274 43 15 chr3 44592967 44593391 -115006392 + Lx6 LINE L1 6389 6838 -622 1 925 247 292 0 0 chr3 44593526 44593598 -115006185 + L1M3 LINE L1 5692 5763 -417 1 925 1030 214 22 18 chr3 44593663 44593887 -115005896 + URR1B DNA MER1_type 1 225 0 1 925 333 0 0 0 chr3 44594035 44594072 -115005711 + (TA)n Simple_repeat Simple_repeat 2 38 0 1 925 184 137 170 38 chr3 44594083 44594136 -115005647 + L2 LINE L2 2392 2451 -968 1 925 21 0 0 0 chr3 44594423 44594444 -115005339 + AT_rich Low_complexity Low_complexity 1 21 0 1 925 1394 81 0 0 chr3 44594756 44594954 -115004829 + L1_Mus2 LINE L1 6369 6566 0 1 925 756 311 70 14 chr3 44595109 44595480 -115004303 - Lx9 LINE L1 -171 7473 7082 1 925 325 364 138 6 chr3 44596033 44596207 -115003576 - ID_B1 SINE B4 -24 200 4 1 925 24 32 0 0 chr3 44596762 44596793 -115002990 + AT_rich Low_complexity Low_complexity 1 31 0 1 925 29 47 0 0 chr3 44597632 44597675 -115002108 + AT_rich Low_complexity Low_complexity 1 43 0 1 925 940 85 21 0 chr3 44598075 44598216 -115001567 - L1_Mur2 LINE L1 -548 5329 5186 1 925 897 230 5 10 chr3 44598219 44598425 -115001358 + Lx4A LINE L1 6854 7058 0 1 925 477 118 0 0 chr3 44598442 44598448 -115001335 + (GAAAA)n Simple_repeat Simple_repeat 2 7 0 1 925 931 105 6 34 chr3 44598448 44598625 -115001158 + (GAAA)n Simple_repeat Simple_repeat 1 172 0 1 925 477 118 0 0 chr3 44598625 44598694 -115001089 + (GAAAA)n Simple_repeat Simple_repeat 3 71 0 1 925 21 36 0 0 chr3 44599119 44599147 -115000636 + AT_rich Low_complexity Low_complexity 1 28 0 1 925 21 0 0 0 chr3 44599748 44599769 -115000014 + AT_rich Low_complexity Low_complexity 1 21 0 1 925 26 0 0 0 chr3 44600700 44600726 -114999057 + AT_rich Low_complexity Low_complexity 1 26 0 1 925 441 0 0 0 chr3 44601311 44601360 -114998423 + (TTTTG)n Simple_repeat Simple_repeat 2 50 0 1 925 2604 162 65 27 chr3 44601389 44601910 -114997873 - Lx3B LINE L1 -5 6968 6428 1 925 947 294 98 23 chr3 44601920 44602348 -114997435 + RMER5 LTR ERV1 59 518 -16 1 925 229 275 0 55 chr3 44602416 44602489 -114997294 - Lx8 LINE L1 -9 7464 7396 1 925 1091 112 0 6 chr3 44602563 44602734 -114997049 + (GAAA)n Simple_repeat Simple_repeat 1 170 0 1 925 1057 341 91 70 chr3 44603650 44604420 -114995363 - MER54A LTR ERVL -115 786 1 1 925 1050 104 0 0 chr3 44604633 44604777 -114995006 - B1_Mm SINE Alu -2 145 2 1 925 28 48 0 0 chr3 44604929 44604971 -114994812 + AT_rich Low_complexity Low_complexity 1 42 0 1 925 28 29 0 0 chr3 44605006 44605041 -114994742 + AT_rich Low_complexity Low_complexity 1 35 0 1 925 33928 77 14 2 chr3 44606912 44613190 -114986593 - L1Md_F2 LINE L1 -6 6991 331 1 925 23102 157 36 20 chr3 44613192 44615439 -114984344 - L1VL1 LINE L1 -87 5796 3478 1 925 180 0 0 0 chr3 44615439 44615459 -114984324 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 1 925 23102 157 36 20 chr3 44615459 44615858 -114983925 - L1VL1 LINE L1 -2406 3477 3071 1 925 233 29 29 0 chr3 44615858 44615892 -114983891 + (TTG)n Simple_repeat Simple_repeat 2 36 0 1 925 23102 157 36 20 chr3 44615892 44616352 -114983431 - L1VL1 LINE L1 -2813 3070 2618 1 925 330 87 0 0 chr3 44616352 44616398 -114983385 + (TA)n Simple_repeat Simple_repeat 2 47 0 1 925 23102 158 36 20 chr3 44616398 44617733 -114982050 - L1VL1 LINE L1 -3266 2617 1288 1 925 1427 68 29 0 chr3 44617733 44617940 -114981843 - L1Md_F3 LINE L1 0 6584 6372 1 925 2943 174 156 60 chr3 44617940 44617970 -114981813 - L1VL1 LINE L1 -5349 1289 1287 1 925 3032 66 0 5 chr3 44617970 44618379 -114981404 - L1Md_F2 LINE L1 0 6582 6176 1 925 2943 174 156 60 chr3 44618379 44619089 -114980694 - L1VL1 LINE L1 -5352 1286 461 1 925 23 54 0 0 chr3 44619441 44619478 -114980305 + AT_rich Low_complexity Low_complexity 1 37 0 1 925 219 103 0 0 chr3 44619841 44619880 -114979903 + (T)n Simple_repeat Simple_repeat 1 39 0 1 925 186 43 0 0 chr3 44619879 44619902 -114979881 + (TG)n Simple_repeat Simple_repeat 2 24 0 1 925 671 105 86 0 chr3 44619909 44620014 -114979769 - B1_Mus1 SINE Alu 0 148 35 1 925 277 305 0 24 chr3 44619945 44620029 -114979754 - MT2B LTR ERVL -344 257 176 1 925 188 163 0 23 chr3 44620487 44620531 -114979252 + (TATATG)n Simple_repeat Simple_repeat 1 43 0 1 925 2658 103 34 0 chr3 44620602 44621010 -114978773 + BGLII_Mus LTR ERVK 1 422 0 1 925 316 352 82 48 chr3 44621103 44621249 -114978534 - RSINE1 SINE B4 -2 163 13 1 925 962 268 59 81 chr3 44622368 44622811 -114976972 - Lx9 LINE L1 -8 7636 7204 1 925 445 32 16 16 chr3 44623004 44623068 -114976715 + (TG)n Simple_repeat Simple_repeat 1 64 0 1 925 292 275 0 42 chr3 44623113 44623185 -114976598 - B4A SINE B4 -14 278 210 1 925 973 351 48 23 chr3 44623371 44623852 -114975931 - Lx8 LINE L1 -198 7275 6783 1 925 598 157 14 0 chr3 44623864 44624004 -114975779 + GA-rich Low_complexity Low_complexity 3 144 0 1 925 595 319 38 19 chr3 44624014 44624276 -114975507 - Lx8 LINE L1 -709 6764 6498 1 925 648 355 12 28 chr3 44624354 44624603 -114975180 - B4A SINE B4 -47 245 1 1 925 27 49 0 0 chr3 44624840 44624881 -114974902 + AT_rich Low_complexity Low_complexity 1 41 0 1 925 35 0 0 0 chr3 44624990 44625025 -114974758 + AT_rich Low_complexity Low_complexity 1 35 0 1 925 430 143 11 11 chr3 44625347 44625439 -114974344 + CT-rich Low_complexity Low_complexity 1 92 0 1 925 255 103 0 0 chr3 44625449 44625488 -114974295 + (TTTA)n Simple_repeat Simple_repeat 4 42 0 1 925 4384 233 64 17 chr3 44626016 44627164 -114972619 + Lx2B LINE L1 5790 6990 -10 1 925 18887 169 95 6 chr3 44628423 44633953 -114965830 + L1_Mus4 LINE L1 614 6635 -1 1 925 46 54 0 0 chr3 44636851 44636925 -114962858 + AT_rich Low_complexity Low_complexity 1 74 0 1 925 1028 102 0 7 chr3 44638218 44638366 -114961417 - B1_Mm SINE Alu 0 147 1 1 925 24 32 0 0 chr3 44639588 44639619 -114960164 + AT_rich Low_complexity Low_complexity 1 31 0 1 925 1639 158 24 69 chr3 44639777 44640111 -114959672 - ORR1A2 LTR MaLR -8 319 1 1 925 25 0 0 0 chr3 44640800 44640825 -114958958 + AT_rich Low_complexity Low_complexity 1 25 0 1 925 1374 59 0 97 chr3 44642450 44642676 -114957107 - L1Md_F2 LINE L1 0 6582 6379 1 925 1273 251 87 0 chr3 44642678 44643024 -114956759 - ORR1C1 LTR MaLR -2 376 1 1 925 2859 252 66 22 chr3 44643029 44644224 -114955559 - ORR1C1-int LTR MaLR -2 1368 13 1 925 1231 247 34 65 chr3 44644246 44644632 -114955151 - ORR1C1 LTR MaLR -2 376 3 1 925 466 291 71 45 chr3 44644748 44644946 -114954837 - B3 SINE B2 -3 213 11 1 925 23 54 0 0 chr3 44645021 44645058 -114954725 + AT_rich Low_complexity Low_complexity 1 37 0 1 925 1877 113 46 0 chr3 44645130 44645413 -114954370 - MERVL-int LTR ERVL -3236 2249 1954 1 925 305 233 56 46 chr3 44646543 44646651 -114953132 - MLT1A1 LTR MaLR 0 408 300 1 925 27 0 0 0 chr3 44646761 44646788 -114952995 + AT_rich Low_complexity Low_complexity 1 27 0 1 925 494 358 18 13 chr3 44647143 44647367 -114952416 + Lx8 LINE L1 6512 6736 -737 1 925 1141 201 61 84 chr3 44647402 44647949 -114951834 - RMER6A LTR ERVK -40 716 297 1 925 323 252 19 45 chr3 44647943 44648097 -114951686 - RMER6C LTR ERVK -314 376 227 1 925 14977 200 55 11 chr3 44648110 44649452 -114950331 - Lx4B LINE L1 -7 7051 5567 1 925 4323 55 2 14 chr3 44649452 44650011 -114949772 - L1Md_F2 LINE L1 0 6582 6031 2 925 14977 192 62 28 chr3 44650011 44652751 -114947032 - Lx4B LINE L1 -311 5566 2716 1 925 783 108 124 0 chr3 44652751 44652880 -114946903 - B1_Mus1 SINE Alu 0 148 4 2 925 14977 192 62 28 chr3 44652880 44652952 -114946831 - Lx4B LINE L1 -3162 2715 2649 1 925 216 0 0 0 chr3 44652952 44652976 -114946807 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 2 925 14977 192 62 28 chr3 44652976 44653332 -114946451 - Lx4B LINE L1 -3229 2648 2293 1 925 3770 172 86 39 chr3 44653333 44654198 -114945585 + RMER17B LTR ERVK 1 905 -53 2 925 3712 220 62 19 chr3 44654198 44655526 -114944257 - Lx4B LINE L1 -3590 2287 893 1 925 468 273 9 0 chr3 44655829 44655939 -114943844 - RMER6A LTR ERVK -517 203 93 1 925 1023 319 43 52 chr3 44655940 44656476 -114943307 + Lx8 LINE L1 6801 7331 -142 1 925 351 0 0 0 chr3 44656576 44656615 -114943168 + (TAA)n Simple_repeat Simple_repeat 3 41 0 2 925 398 405 50 0 chr3 44656758 44656958 -114942825 - ID_B1 SINE B4 -13 211 2 2 925 21 0 0 0 chr3 44658834 44658855 -114940928 + AT_rich Low_complexity Low_complexity 1 21 0 2 925 215 305 24 12 chr3 44658930 44659013 -114940770 + CT-rich Low_complexity Low_complexity 4 87 0 2 925 1982 138 91 67 chr3 44659541 44659959 -114939824 + RLTR23 LTR ERV1 3 430 0 2 925 35219 37 0 0 chr3 44661441 44666810 -114932973 + L1Md_T LINE L1 123 5589 -297 2 925 8905 9 0 0 chr3 44666810 44667805 -114931978 + L1Md_T LINE L1 5590 6584 -1 2 925 438 149 0 0 chr3 44668171 44668258 -114931525 - Lx LINE L1 -1 6653 6567 2 925 257 307 114 0 chr3 44669180 44669268 -114930515 + PB1D10 SINE Alu 2 99 -18 2 925 1336 152 4 16 chr3 44669308 44669556 -114930227 - Lx LINE L1 -8 6646 6402 2 925 3959 182 55 9 chr3 44669935 44670718 -114929065 + Lx4B LINE L1 5779 6597 -461 2 925 235 236 12 100 chr3 44670714 44670794 -114928989 + Lx5 LINE L1 6726 6798 -252 2 925 231 125 0 0 chr3 44672365 44672405 -114927378 + (TAA)n Simple_repeat Simple_repeat 2 41 0 2 925 26 30 0 0 chr3 44672560 44672593 -114927190 + AT_rich Low_complexity Low_complexity 1 33 0 2 925 895 305 9 87 chr3 44672701 44673128 -114926655 - MT2A LTR ERVL 0 533 140 2 925 381 284 15 15 chr3 44673206 44673342 -114926441 - L1MD3 LINE L1 -2148 5847 5712 2 925 291 93 0 0 chr3 44673529 44673572 -114926211 + (CA)n Simple_repeat Simple_repeat 2 44 0 2 925 770 102 0 8 chr3 44673633 44673752 -114926031 + (TAGA)n Simple_repeat Simple_repeat 1 118 0 2 925 437 333 65 75 chr3 44673785 44674064 -114925719 + B4A SINE B4 1 276 -16 2 925 399 41 0 0 chr3 44674083 44674132 -114925651 + (CA)n Simple_repeat Simple_repeat 2 50 0 2 925 33 73 0 0 chr3 44674152 44674220 -114925563 + AT_rich Low_complexity Low_complexity 1 68 0 2 925 242 303 85 66 chr3 44674384 44674490 -114925293 - PB1D7 SINE Alu -12 108 1 2 925 1157 227 18 0 chr3 44674911 44675140 -114924643 - Lx9 LINE L1 -329 7315 7083 2 925 775 257 43 43 chr3 44675165 44675442 -114924341 - Lx7 LINE L1 0 7696 7420 2 925 1173 208 76 23 chr3 44675441 44675742 -114924041 - Lx9 LINE L1 -570 7074 6758 2 925 668 200 0 52 chr3 44675746 44675899 -114923884 + Lx9 LINE L1 7326 7470 -174 2 925 387 316 13 99 chr3 44675912 44676063 -114923720 - RSINE1 SINE B4 0 165 28 2 925 21 57 0 0 chr3 44676664 44676699 -114923084 + AT_rich Low_complexity Low_complexity 1 35 0 2 925 5018 233 47 65 chr3 44676764 44678636 -114921147 + Lx6 LINE L1 5332 7167 -293 2 925 644 200 9 249 chr3 44678616 44678746 -114921037 - Lx6 LINE L1 -598 6862 6753 2 925 189 0 0 0 chr3 44678746 44678767 -114921016 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 2 925 644 200 9 249 chr3 44678767 44678846 -114920937 - Lx6 LINE L1 -708 6752 6731 2 925 2188 206 41 19 chr3 44678846 44679362 -114920421 - RLTR11A2 LTR ERVK 0 527 1 2 925 644 200 9 249 chr3 44679362 44679477 -114920306 - Lx6 LINE L1 -730 6730 6615 2 925 495 209 101 30 chr3 44679499 44679667 -114920116 + Lx7 LINE L1 7511 7690 -6 2 925 983 237 22 62 chr3 44680061 44680425 -114919358 + Lx2B LINE L1 6677 7006 -2 2 925 1105 58 0 7 chr3 44680431 44680570 -114919213 + B1_Mus1 SINE Alu 2 139 -9 2 925 31 0 0 0 chr3 44680582 44680613 -114919170 + AT_rich Low_complexity Low_complexity 1 31 0 2 925 583 233 0 54 chr3 44682170 44682338 -114917445 + RLTR9A LTR ERVK 210 368 0 2 925 360 111 0 0 chr3 44682498 44682552 -114917231 + (TTA)n Simple_repeat Simple_repeat 2 55 0 2 925 547 220 42 21 chr3 44682552 44682696 -114917087 - B1_Mus1 SINE Alu 0 148 2 2 925 245 261 88 68 chr3 44682711 44682859 -114916924 - MIR SINE MIR -12 250 100 2 925 205 225 28 0 chr3 44683336 44683407 -114916376 + (TTA)n Simple_repeat Simple_repeat 1 73 0 2 925 387 304 54 36 chr3 44683435 44683602 -114916181 - B3A SINE B2 -46 170 1 2 925 23 0 0 0 chr3 44684244 44684267 -114915516 + AT_rich Low_complexity Low_complexity 1 23 0 2 925 306 0 0 0 chr3 44684292 44684326 -114915457 + (TA)n Simple_repeat Simple_repeat 1 34 0 2 925 344 341 72 65 chr3 44684531 44684722 -114915061 - MER20 DNA MER1_type -591 192 1 2 925 262 333 12 0 chr3 44684794 44684878 -114914905 - ORR1D1 LTR MaLR -279 95 11 2 925 1014 106 0 0 chr3 44685117 44685258 -114914525 + B1_Mus2 SINE Alu 1 141 -6 2 925 3460 61 9 7 chr3 44685385 44685845 -114913938 - L1Md_F2 LINE L1 -17 6565 6105 2 925 487 18 0 0 chr3 44685845 44685900 -114913883 + L1Md_F2 LINE L1 5797 5851 -731 2 925 220 224 0 0 chr3 44687059 44687108 -114912675 + A-rich Low_complexity Low_complexity 2 50 0 2 925 717 175 21 21 chr3 44688024 44688164 -114911619 + B1_Mur3 SINE Alu 1 140 -9 2 925 643 209 39 11 chr3 44688182 44688361 -114911422 - Lx9 LINE L1 -15 7629 7446 2 925 35320 47 0 3 chr3 44688358 44693680 -114906103 + L1Md_T LINE L1 190 5589 -297 2 925 8304 35 0 0 chr3 44693680 44694664 -114905119 + L1Md_T LINE L1 5590 6573 -12 2 925 249 125 121 35 chr3 44694665 44694723 -114905060 - Lx9 LINE L1 -186 7458 7396 2 925 458 228 0 10 chr3 44694737 44694839 -114904944 + Lx9 LINE L1 6868 6968 -676 2 115 512 344 55 12 chr3 44695318 44695733 -114904050 - L1MC LINE L1 -3245 2901 2469 2 926 28 71 0 0 chr3 44696388 44696444 -114903339 + AT_rich Low_complexity Low_complexity 1 56 0 2 926 1499 334 62 37 chr3 44696471 44697232 -114902551 + Lx8 LINE L1 6692 7471 -2 2 926 24 0 0 0 chr3 44697451 44697475 -114902308 + AT_rich Low_complexity Low_complexity 1 24 0 2 926 23 0 0 0 chr3 44698028 44698051 -114901732 + AT_rich Low_complexity Low_complexity 1 23 0 2 926 4197 157 35 19 chr3 44698298 44699677 -114900106 + L1VL2 LINE L1 78 1482 -2133 2 926 341 96 0 0 chr3 44699676 44699728 -114900055 + L1_Mus2 LINE L1 4504 4555 -1328 2 926 34003 75 5 5 chr3 44699728 44705966 -114893817 - L1Md_F2 LINE L1 -1 6584 250 2 926 8754 106 14 1 chr3 44705968 44707966 -114891817 + L1_Mus2 LINE L1 4541 6558 -8 2 926 3600 129 60 8 chr3 44707969 44708711 -114891072 + L1PB4 LINE L1 5286 6570 -12 2 926 4445 117 17 7 chr3 44708683 44709418 -114890365 + L1_Mus3 LINE L1 5841 6638 0 2 926 22 35 0 0 chr3 44710034 44710063 -114889720 + AT_rich Low_complexity Low_complexity 1 29 0 2 926 4933 72 0 2 chr3 44711508 44712152 -114887631 + L1Md_F2 LINE L1 5940 6582 0 2 926 376 274 23 31 chr3 44712190 44712318 -114887465 - Lx4B LINE L1 -4 7054 6928 2 926 307 327 30 0 chr3 44712351 44712452 -114887331 + RSINE1 SINE B4 2 105 -60 2 926 1699 191 255 53 chr3 44712455 44713180 -114886603 + RMER6C LTR ERVK 1 717 -3 2 926 337 250 83 41 chr3 44713348 44713469 -114886314 + RMER15-int LTR ERVL 1277 1402 -3597 2 926 351 379 38 9 chr3 44714091 44714304 -114885479 + ID_B1 SINE B4 1 219 -5 2 926 2065 328 86 21 chr3 44714939 44716054 -114883729 - Lx7 LINE L1 -474 7222 6035 2 926 348 148 0 0 chr3 44716143 44716204 -114883579 + (GAA)n Simple_repeat Simple_repeat 3 63 0 2 926 294 322 32 39 chr3 44716227 44716382 -114883401 - Lx9 LINE L1 -706 6938 6785 2 926 21 71 0 0 chr3 44716396 44716438 -114883345 + AT_rich Low_complexity Low_complexity 1 42 0 2 926 290 336 29 9 chr3 44716447 44716552 -114883231 - PB1D10 SINE Alu -10 107 1 2 926 619 302 110 64 chr3 44717777 44718103 -114881680 + Lx8 LINE L1 7046 7386 -87 2 926 7450 46 32 12 chr3 44718629 44719594 -114880189 - L1Md_F3 LINE L1 -14 6570 5587 2 926 276 152 0 0 chr3 44720561 44720627 -114879156 + (CAGAGA)n Simple_repeat Simple_repeat 6 71 0 2 926 888 159 0 0 chr3 44720640 44720797 -114878986 + GA-rich Low_complexity Low_complexity 1 157 0 2 926 215 346 0 0 chr3 44720830 44720911 -114878872 + (CA)n Simple_repeat Simple_repeat 2 82 0 2 926 428 165 25 149 chr3 44721212 44721333 -114878450 + B1_Mur4 SINE Alu 45 150 0 2 926 512 276 29 22 chr3 44722142 44722279 -114877504 + B1_Mur1 SINE Alu 6 143 -6 2 926 252 224 0 0 chr3 44722313 44722362 -114877421 + (CTG)n Simple_repeat Simple_repeat 2 50 0 2 926 386 157 10 0 chr3 44722453 44722555 -114877228 + CT-rich Low_complexity Low_complexity 2 104 0 2 926 204 97 0 0 chr3 44722555 44722586 -114877197 + (CA)n Simple_repeat Simple_repeat 1 31 0 2 926 260 244 85 23 chr3 44722866 44722996 -114876787 - L1M4b LINE L1 -5262 2072 1935 2 926 351 344 5 115 chr3 44723249 44723466 -114876317 - B3A SINE B2 -5 193 1 2 926 2672 269 61 18 chr3 44723475 44724249 -114875534 - RMER1C Other Other -11 1331 525 2 926 4730 98 21 24 chr3 44724804 44725503 -114874280 - Lx3_Mus LINE L1 0 7009 6313 2 926 2917 202 0 34 chr3 44725503 44726122 -114873661 - L1_Mm LINE L1 -752 5131 4534 2 926 1011 157 12 0 chr3 44726121 44726293 -114873490 + L1_Mm LINE L1 4353 4526 -1357 2 926 234 99 0 0 chr3 44726294 44726331 -114873452 - B3A SINE B2 -157 38 2 2 926 256 174 0 0 chr3 44726680 44726726 -114873057 + MLT1C LTR MaLR 74 119 -348 2 926 495 33 0 0 chr3 44726863 44726924 -114872859 + (CATA)n Simple_repeat Simple_repeat 3 63 0 2 926 1083 94 0 0 chr3 44727086 44727266 -114872517 + (TC)n Simple_repeat Simple_repeat 1 180 0 2 926 180 0 0 0 chr3 44728362 44728382 -114871401 + (TA)n Simple_repeat Simple_repeat 2 21 0 2 926 1102 97 7 0 chr3 44728630 44728775 -114871008 + B1_Mus2 SINE Alu 1 146 -1 2 926 300 376 35 0 chr3 44729465 44729638 -114870145 - Lx8 LINE L1 -490 6983 6805 2 926 22 0 0 0 chr3 44730089 44730111 -114869672 + AT_rich Low_complexity Low_complexity 1 22 0 3 926 21 36 0 0 chr3 44730251 44730279 -114869504 + AT_rich Low_complexity Low_complexity 1 28 0 3 926 315 0 0 0 chr3 44730600 44730635 -114869148 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 3 926 928 107 15 0 chr3 44730637 44730768 -114869015 - B1_Mus2 SINE Alu -13 134 2 3 926 33156 96 11 6 chr3 44730974 44737160 -114862623 - L1Md_F2 LINE L1 -4 6578 356 3 926 24 67 0 0 chr3 44737245 44737290 -114862493 + AT_rich Low_complexity Low_complexity 1 45 0 3 926 438 317 19 79 chr3 44737290 44737718 -114862065 - L1M3 LINE L1 -1488 4655 4254 3 926 439 303 32 149 chr3 44737733 44738136 -114861647 + RLTR15 LTR ERVK 4 359 0 3 926 897 308 81 25 chr3 44738148 44738775 -114861008 - L1M3 LINE L1 -1917 4223 3554 3 926 469 164 66 37 chr3 44741329 44741447 -114858336 + Lx3B LINE L1 6862 6995 -5 3 926 374 335 69 22 chr3 44741601 44741876 -114857907 - Lx9 LINE L1 -151 7493 7206 3 926 1003 244 70 30 chr3 44741889 44742159 -114857624 - Lx6 LINE L1 -246 7214 6934 3 926 327 316 21 157 chr3 44742372 44742558 -114857225 + B3A SINE B2 45 205 -11 3 926 186 71 0 0 chr3 44742935 44742963 -114856820 + (T)n Simple_repeat Simple_repeat 1 28 0 3 926 2194 125 0 36 chr3 44742963 44743328 -114856455 - Lx LINE L1 0 6654 6303 3 926 280 327 10 10 chr3 44743759 44743861 -114855922 + CT-rich Low_complexity Low_complexity 1 102 0 3 926 230 333 93 98 chr3 44744044 44744290 -114855493 + Lx8 LINE L1 7212 7456 -17 3 926 1118 75 0 7 chr3 44744881 44745028 -114854755 - B1_Mm SINE Alu -1 146 1 3 926 24 32 0 0 chr3 44745639 44745670 -114854113 + AT_rich Low_complexity Low_complexity 1 31 0 3 926 501 240 0 37 chr3 44745694 44745802 -114853981 + B1_Mur3 SINE Alu 41 144 -5 3 926 206 216 0 0 chr3 44746286 44746337 -114853446 + (TG)n Simple_repeat Simple_repeat 2 52 0 3 926 24 32 0 0 chr3 44746553 44746584 -114853199 + AT_rich Low_complexity Low_complexity 1 31 0 3 926 225 290 0 0 chr3 44746807 44746869 -114852914 + (CA)n Simple_repeat Simple_repeat 2 63 0 3 926 387 0 0 0 chr3 44747732 44747775 -114852008 + (TCTA)n Simple_repeat Simple_repeat 4 46 0 3 926 462 310 79 47 chr3 44748046 44748300 -114851483 + Lx8 LINE L1 6665 6926 -547 3 926 221 163 0 0 chr3 44748428 44748471 -114851312 + A-rich Low_complexity Low_complexity 3 45 0 3 926 25640 157 15 20 chr3 44748473 44750142 -114849641 + L1_Mus3 LINE L1 442 2082 -3801 3 926 221 0 35 0 chr3 44750142 44750171 -114849612 + (CAAA)n Simple_repeat Simple_repeat 3 32 0 3 926 25640 151 13 23 chr3 44750171 44750962 -114848821 + L1_Mus3 LINE L1 2083 2870 -3013 3 926 987 117 0 0 chr3 44750962 44751176 -114848607 + (GAAA)n Simple_repeat Simple_repeat 1 214 0 3 926 25640 143 14 21 chr3 44751176 44754949 -114844834 + L1_Mus3 LINE L1 2871 6630 -8 3 926 24 0 0 0 chr3 44754949 44754973 -114844810 + AT_rich Low_complexity Low_complexity 1 24 0 3 926 11166 48 4 0 chr3 44754973 44757039 -114842744 - L1Md_F3 LINE L1 -15 6569 4495 3 926 36 23 0 0 chr3 44757039 44757082 -114842701 + AT_rich Low_complexity Low_complexity 1 43 0 3 926 298 362 75 14 chr3 44757148 44757442 -114842341 + Lx8 LINE L1 7108 7419 -54 3 926 327 328 39 19 chr3 44757706 44757911 -114841872 - B3 SINE B2 -6 210 2 3 926 438 114 0 0 chr3 44759498 44759564 -114840219 + L1Md_F2 LINE L1 5532 5616 -568 3 926 7088 79 34 0 chr3 44759564 44760526 -114839257 + L1Md_F2 LINE L1 5588 6582 0 3 926 518 298 172 31 chr3 44761112 44761403 -114838380 - Charlie2a DNA MER1_type -2528 333 2 3 926 999 157 48 21 chr3 44762963 44763152 -114836631 - RMER6C LTR ERVK -496 194 1 3 926 1139 262 71 21 chr3 44763152 44763284 -114836499 - ORR1D1 LTR MaLR -18 356 210 3 926 1024 143 11 11 chr3 44763284 44763468 -114836315 + L1_Mus3 LINE L1 6455 6638 0 3 926 1139 262 71 21 chr3 44763468 44763674 -114836109 - ORR1D1 LTR MaLR -165 209 2 3 926 310 259 145 22 chr3 44763897 44764163 -114835620 + L1MA5 LINE L1 5869 6168 -129 3 926 23 33 0 0 chr3 44764945 44764975 -114834808 + AT_rich Low_complexity Low_complexity 1 30 0 3 926 227 391 26 17 chr3 44765569 44765686 -114834097 + RSINE1 SINE B4 36 153 -12 3 926 203 0 0 36 chr3 44766255 44766283 -114833500 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 3 926 689 168 0 20 chr3 44766991 44767137 -114832646 + (ATGGTG)n Simple_repeat Simple_repeat 4 146 0 3 926 462 326 8 8 chr3 44767354 44767487 -114832296 - ID_B1 SINE B4 -1 223 91 3 926 7568 149 26 21 chr3 44767593 44768912 -114830871 + Lx2B LINE L1 5673 6998 -2 3 926 234 200 0 0 chr3 44768920 44768965 -114830818 + RMER15 LTR ERVL 15 59 -516 3 926 6861 158 38 54 chr3 44769004 44769959 -114829824 - L1_Mur1 LINE L1 -1405 4481 3491 3 926 660 26 0 0 chr3 44769959 44770037 -114829746 + (TTCC)n Simple_repeat Simple_repeat 4 81 0 3 926 6861 158 38 54 chr3 44770037 44770576 -114829207 - L1_Mur1 LINE L1 -2396 3490 3012 3 926 426 376 108 30 chr3 44770591 44771214 -114828569 - Charlie6 DNA MER1_type -2775 725 54 3 926 252 299 0 115 chr3 44771214 44771301 -114828482 + RMER30 DNA MER1_type 2 78 -124 3 926 216 0 0 0 chr3 44772114 44772138 -114827645 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 3 926 335 230 69 0 chr3 44773255 44773342 -114826441 - MTEa LTR MaLR -285 94 2 3 926 232 266 132 9 chr3 44773391 44773505 -114826278 - L1M2 LINE L1 -573 5739 5612 3 926 241 379 46 0 chr3 44774341 44774428 -114825355 - B1F1 SINE Alu -58 91 1 3 926 228 187 25 51 chr3 44776469 44776548 -114823235 + (TATAA)n Simple_repeat Simple_repeat 3 79 0 3 926 3711 32 0 0 chr3 44776744 44777181 -114822602 + L1Md_A LINE L1 6143 6579 -3 3 926 26 0 0 0 chr3 44777181 44777207 -114822576 + AT_rich Low_complexity Low_complexity 1 26 0 3 926 417 281 40 57 chr3 44777282 44777430 -114822353 - B3A SINE B2 -7 209 59 3 926 23 0 0 0 chr3 44778220 44778243 -114821540 + AT_rich Low_complexity Low_complexity 1 23 0 3 926 282 306 253 16 chr3 44778532 44778718 -114821065 + B4A SINE B4 28 257 -35 3 926 25 31 0 0 chr3 44779449 44779481 -114820302 + AT_rich Low_complexity Low_complexity 1 32 0 3 926 484 289 0 24 chr3 44779607 44779731 -114820052 + B1_Mus1 SINE Alu 13 133 -15 3 926 378 0 0 0 chr3 44779734 44779776 -114820007 + (TAAA)n Simple_repeat Simple_repeat 1 42 0 3 926 1647 183 19 25 chr3 44779845 44780170 -114819613 - Lx4B LINE L1 -50 7008 6686 3 926 1032 191 12 89 chr3 44780501 44780748 -114819035 + Lx6 LINE L1 6682 6909 -551 3 926 661 147 0 15 chr3 44780758 44780889 -114818894 + Lx3A LINE L1 6851 6979 -2 3 926 515 186 9 121 chr3 44780902 44781018 -114818765 - URR1A DNA MER1_type -123 103 1 3 926 675 291 153 17 chr3 44781099 44781410 -114818373 + Lx6 LINE L1 6923 7533 -163 3 926 180 0 0 0 chr3 44781431 44781451 -114818332 + (CAAAAA)n Simple_repeat Simple_repeat 3 22 0 3 926 204 40 0 0 chr3 44781658 44781683 -114818100 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 3 926 27 0 0 0 chr3 44781799 44781826 -114817957 + AT_rich Low_complexity Low_complexity 1 27 0 3 926 3285 222 30 58 chr3 44781897 44782779 -114817004 + Lx5 LINE L1 4923 5798 -79 3 926 2247 111 3 20 chr3 44782779 44783130 -114816653 + L1_Mus4 LINE L1 6290 6634 -2 3 926 3285 191 72 94 chr3 44783130 44783319 -114816464 + Lx5 LINE L1 5799 5992 -1058 3 926 1256 144 16 45 chr3 44784120 44784238 -114815545 - L1_Mm LINE L1 -1148 4735 4628 3 926 267 31 0 0 chr3 44784238 44784270 -114815513 + (TTG)n Simple_repeat Simple_repeat 2 33 0 3 926 1256 144 16 45 chr3 44784270 44784398 -114815385 - L1_Mm LINE L1 -1256 4627 4496 3 926 956 98 0 0 chr3 44784388 44784520 -114815263 + L1_Mm LINE L1 5391 5522 -361 3 926 1136 116 47 0 chr3 44784530 44784720 -114815063 + L1_Mus3 LINE L1 6433 6631 -7 3 926 24 32 0 0 chr3 44784829 44784860 -114814923 + AT_rich Low_complexity Low_complexity 1 31 0 3 926 30 0 0 0 chr3 44785363 44785393 -114814390 + AT_rich Low_complexity Low_complexity 1 30 0 3 926 358 304 35 25 chr3 44785464 44785622 -114814161 - Lx7 LINE L1 -438 7258 7105 3 926 337 338 172 21 chr3 44786485 44786721 -114813062 - B4A SINE B4 -4 288 17 3 926 468 0 0 0 chr3 44787071 44787123 -114812660 + (TA)n Simple_repeat Simple_repeat 2 53 0 3 926 435 253 42 0 chr3 44787130 44787225 -114812558 + U6 snRNA snRNA 8 106 -1 3 926 23 54 0 0 chr3 44787248 44787285 -114812498 + AT_rich Low_complexity Low_complexity 1 37 0 3 926 1457 172 117 29 chr3 44787305 44787646 -114812137 - Lx3B LINE L1 -3 6970 6600 3 926 225 0 0 0 chr3 44788399 44788424 -114811359 + (CA)n Simple_repeat Simple_repeat 1 25 0 3 926 341 266 101 56 chr3 44788687 44788974 -114810809 - L1MD3 LINE L1 -1987 6008 5709 3 926 219 114 0 0 chr3 44788980 44789015 -114810768 + (CAAA)n Simple_repeat Simple_repeat 1 35 0 3 926 1672 255 103 6 chr3 44789025 44789522 -114810261 + Lx9 LINE L1 7047 7591 -53 3 926 435 121 7 0 chr3 44789589 44789663 -114810120 + B1_Mus2 SINE Alu 42 147 0 3 926 1131 112 0 0 chr3 44789669 44789839 -114809944 + (GGAAA)n Simple_repeat Simple_repeat 3 172 0 3 926 286 164 56 56 chr3 44789839 44789974 -114809809 + GA-rich Low_complexity Low_complexity 10 144 0 3 926 422 286 42 20 chr3 44789974 44790186 -114809597 - MTD LTR MaLR -31 390 181 3 926 600 121 23 0 chr3 44790195 44790327 -114809456 + (CA)n Simple_repeat Simple_repeat 1 135 0 3 926 408 376 76 16 chr3 44790627 44790811 -114808972 - B3A SINE B2 -3 195 1 3 926 1866 153 0 3 chr3 44790875 44791189 -114808594 - Lx LINE L1 0 6654 6342 3 926 183 80 0 0 chr3 44791426 44791451 -114808332 + (TTTTA)n Simple_repeat Simple_repeat 1 25 0 3 926 568 293 48 5 chr3 44791632 44791838 -114807945 + B3 SINE B2 1 215 -1 3 926 760 354 74 8 chr3 44791849 44792336 -114807447 - Lx7 LINE L1 -374 7322 6804 3 926 3132 150 11 4 chr3 44792519 44793049 -114806734 + Lx2B LINE L1 6449 6982 -18 3 926 292 196 0 0 chr3 44793066 44793122 -114806661 + L1_Mur2 LINE L1 2497 2552 -3325 3 926 1414 148 84 0 chr3 44793116 44793366 -114806417 - Lx2B LINE L1 -553 6447 6177 3 926 5772 153 42 11 chr3 44793379 44793809 -114805974 - L1_Mur2 LINE L1 -3371 2506 2050 4 926 570 41 0 0 chr3 44793809 44793882 -114805901 + (TG)n Simple_repeat Simple_repeat 1 73 0 4 926 5772 153 42 11 chr3 44793882 44794581 -114805202 - L1_Mur2 LINE L1 -3828 2049 1343 4 926 1091 154 16 31 chr3 44794581 44794707 -114805076 - B2_Mm2 SINE B2 -3 192 65 4 926 1131 126 68 5 chr3 44794707 44794898 -114804885 + L1_Mus2 LINE L1 6364 6566 0 4 926 1091 154 16 31 chr3 44794898 44794965 -114804818 - B2_Mm2 SINE B2 -131 64 2 4 926 22 0 0 0 chr3 44794996 44795018 -114804765 + AT_rich Low_complexity Low_complexity 1 22 0 4 926 279 287 143 41 chr3 44795024 44795122 -114804661 - RSINE1 SINE B4 -56 109 2 4 926 541 288 27 73 chr3 44795136 44795395 -114804388 + L1M3 LINE L1 3578 3824 -2316 4 926 3151 179 24 27 chr3 44795476 44795499 -114804284 - L1_Mur2 LINE L1 -5881 1205 1183 4 926 3577 49 5 0 chr3 44795499 44795945 -114803838 - L1Md_F2 LINE L1 0 6582 6135 4 926 3151 179 24 27 chr3 44795945 44796553 -114803230 - L1_Mur2 LINE L1 -5904 1182 576 4 926 1514 150 4 0 chr3 44796654 44796901 -114802882 + Lx2 LINE L1 6750 6997 0 4 926 225 377 0 0 chr3 44797183 44797252 -114802531 + ID4_ SINE ID 1 69 -14 4 926 1885 54 8 4 chr3 44797259 44797499 -114802284 - L1_Mus2 LINE L1 -194 6372 6132 4 926 1260 86 5 11 chr3 44797499 44797819 -114801964 + L1_Mus2 LINE L1 6380 6566 0 4 926 291 71 0 0 chr3 44797810 44797852 -114801931 + (CA)n Simple_repeat Simple_repeat 2 43 0 4 926 400 305 55 65 chr3 44797995 44798286 -114801497 + B4A SINE B4 1 288 -4 4 926 396 279 81 38 chr3 44798475 44798736 -114801047 - BLACKJACK DNA AcHobo -1514 1430 1159 4 926 1013 103 14 0 chr3 44799500 44799646 -114800137 + B1_Mus1 SINE Alu 1 148 0 4 926 1032 87 0 0 chr3 44799673 44799822 -114799961 + (GAAA)n Simple_repeat Simple_repeat 4 152 0 4 926 21 36 0 0 chr3 44799986 44800014 -114799769 + AT_rich Low_complexity Low_complexity 1 28 0 4 926 330 316 99 45 chr3 44800219 44800531 -114799252 + L1M5 LINE L1 5364 5692 -487 4 926 318 50 0 0 chr3 44800571 44800611 -114799172 + (CA)n Simple_repeat Simple_repeat 1 40 0 4 926 423 0 0 0 chr3 44800954 44801001 -114798782 + (TAAAA)n Simple_repeat Simple_repeat 1 47 0 4 926 389 250 22 0 chr3 44801339 44801431 -114798352 - ID_B1 SINE B4 -4 220 127 4 926 5319 74 6 0 chr3 44802000 44802702 -114797081 + L1_Mus2 LINE L1 5859 6564 -2 4 926 22 0 0 0 chr3 44802802 44802824 -114796959 + AT_rich Low_complexity Low_complexity 1 22 0 4 926 341 169 0 31 chr3 44802876 44802892 -114796891 + A-rich Low_complexity Low_complexity 1 14 0 4 926 1203 62 0 0 chr3 44802892 44803037 -114796746 + B1_Mm SINE Alu 3 147 0 4 926 341 169 0 31 chr3 44803037 44803118 -114796665 + A-rich Low_complexity Low_complexity 15 95 0 4 926 876 205 285 4 chr3 44803263 44803498 -114796285 + ORR1B2 LTR MaLR 1 301 -66 4 926 525 32 0 0 chr3 44803504 44803567 -114796216 + (TC)n Simple_repeat Simple_repeat 1 63 0 4 926 333 0 0 0 chr3 44803567 44803603 -114796180 + (CA)n Simple_repeat Simple_repeat 1 37 0 4 926 23 33 0 0 chr3 44804390 44804420 -114795363 + AT_rich Low_complexity Low_complexity 1 30 0 4 926 418 360 82 27 chr3 44804473 44804767 -114795016 - MTEa LTR MaLR -14 365 56 4 926 16970 151 128 15 chr3 44805091 44805990 -114793793 + Lx LINE L1 400 1405 -4478 4 926 3435 52 2 7 chr3 44805990 44806434 -114793349 + L1Md_F2 LINE L1 6138 6579 -3 4 926 16970 171 162 36 chr3 44806434 44807359 -114792424 + Lx LINE L1 1406 2297 -3586 4 926 1147 75 0 20 chr3 44807359 44807509 -114792274 - B1_Mm SINE Alu 0 147 1 4 926 16970 171 162 36 chr3 44807509 44809538 -114790245 + Lx LINE L1 2298 4886 -997 4 926 1143 68 0 13 chr3 44809538 44809688 -114790095 + B1_Mus1 SINE Alu 1 148 0 4 926 16970 151 78 20 chr3 44809688 44811467 -114788316 + Lx LINE L1 4887 6652 -2 4 926 263 130 290 0 chr3 44811587 44811656 -114788127 - RMER30 DNA MER1_type -6 196 108 4 926 1081 118 0 11 chr3 44813312 44813492 -114786291 + (GAA)n Simple_repeat Simple_repeat 2 179 0 4 926 633 61 0 0 chr3 44813492 44813574 -114786209 + (GGA)n Simple_repeat Simple_repeat 1 82 0 4 926 1335 39 6 11 chr3 44813574 44813754 -114786029 + (GAA)n Simple_repeat Simple_repeat 1 179 0 4 926 277 127 31 31 chr3 44814405 44814470 -114785313 + (TTTA)n Simple_repeat Simple_repeat 4 68 0 4 926 3969 90 14 12 chr3 44814985 44815550 -114784233 - L1_Mus1 LINE L1 0 6567 6002 4 926 1622 130 0 0 chr3 44815550 44815804 -114783979 - L1Md_F LINE L1 -474 5409 5156 4 926 13200 183 58 14 chr3 44815803 44818675 -114781108 - L1_Mur2 LINE L1 -1677 4200 1203 4 926 4760 153 111 11 chr3 44818645 44819580 -114780203 - L1Md_F LINE L1 -5384 1232 204 4 926 932 219 89 20 chr3 44820074 44820321 -114779462 - Lx3C LINE L1 -8 6968 6705 4 926 4825 120 58 25 chr3 44820304 44820419 -114779364 - Lx3C LINE L1 -525 6451 6335 4 926 1971 161 12 0 chr3 44820419 44820742 -114779041 - ORR1A2 LTR MaLR 0 327 1 4 926 5546 124 36 40 chr3 44820742 44822204 -114777579 - Lx3C LINE L1 -642 6334 4895 4 926 1722 140 17 0 chr3 44822204 44822496 -114777287 - Lx3C LINE L1 -3347 2539 2243 4 926 5280 51 5 1 chr3 44822807 44823475 -114776308 + L1Md_A LINE L1 440 1109 -5615 4 926 15753 23 3 0 chr3 44823463 44825309 -114774474 + L1Md_A LINE L1 3736 5586 -297 4 926 8363 34 0 1 chr3 44825309 44826306 -114773477 + L1Md_A LINE L1 5587 6582 0 4 927 365 311 102 31 chr3 44826846 44827102 -114772681 + L1M5 LINE L1 2217 2490 -3656 4 927 21 107 0 0 chr3 44827105 44827189 -114772594 + AT_rich Low_complexity Low_complexity 1 84 0 4 927 750 237 177 4 chr3 44827609 44827863 -114771920 + Lx3C LINE L1 6677 6974 -2 4 927 4465 2 0 0 chr3 44827882 44828379 -114771404 - L1Md_A LINE L1 -848 5035 4539 4 927 4891 4 0 0 chr3 44828379 44828927 -114770856 + L1Md_A LINE L1 5039 5586 -297 4 927 9024 2 0 0 chr3 44828927 44829922 -114769861 + L1Md_A LINE L1 5587 6581 -1 4 927 23 0 0 0 chr3 44830005 44830028 -114769755 + AT_rich Low_complexity Low_complexity 1 23 0 4 927 252 384 20 0 chr3 44830526 44830672 -114769111 - MIRb SINE MIR -29 239 91 4 927 342 0 0 0 chr3 44831171 44831209 -114768574 + (TTTA)n Simple_repeat Simple_repeat 4 41 0 4 927 248 250 8 23 chr3 44831868 44831999 -114767784 + (TA)n Simple_repeat Simple_repeat 2 130 0 4 927 248 337 22 22 chr3 44833605 44833696 -114766087 - MER81 DNA AcHobo -21 93 3 4 927 270 345 63 9 chr3 44834206 44834317 -114765466 + RSINE1 SINE B4 14 130 -35 4 927 21 0 0 0 chr3 44835131 44835152 -114764631 + AT_rich Low_complexity Low_complexity 1 21 0 4 927 335 274 85 0 chr3 44835217 44835323 -114764460 + Lx9 LINE L1 7196 7310 -334 4 927 32 67 0 0 chr3 44835630 44835690 -114764093 + AT_rich Low_complexity Low_complexity 1 60 0 4 927 3220 41 13 3 chr3 44836509 44836901 -114762882 - MTA_Mm LTR MaLR 0 396 1 4 927 7337 48 3 5 chr3 44837358 44838284 -114761499 - L1Md_F3 LINE L1 0 6584 5661 4 927 411 308 169 32 chr3 44838285 44839011 -114760772 + L1M4 LINE L1 4869 5691 -483 4 927 23 0 0 0 chr3 44839714 44839737 -114760046 + AT_rich Low_complexity Low_complexity 1 23 0 4 927 278 77 0 0 chr3 44839937 44839976 -114759807 - U2 snRNA snRNA -149 39 1 4 927 183 156 0 0 chr3 44840060 44840092 -114759691 + (TATATG)n Simple_repeat Simple_repeat 4 35 0 4 927 2906 46 0 0 chr3 44840098 44840444 -114759339 + ORR1A1 LTR MaLR 1 346 0 4 927 842 149 50 0 chr3 44840542 44840703 -114759080 - URR1B DNA MER1_type 0 225 57 4 927 24 53 0 0 chr3 44840786 44840824 -114758959 + AT_rich Low_complexity Low_complexity 1 38 0 4 927 8444 113 27 37 chr3 44840825 44842230 -114757553 - Lx3_Mus LINE L1 -99 6910 5549 4 927 2593 201 27 4 chr3 44842290 44842805 -114756978 - Lx LINE L1 0 6654 6128 4 927 468 114 14 0 chr3 44842822 44842892 -114756891 - Lx LINE L1 -650 6004 5934 4 927 322 81 0 0 chr3 44842887 44842935 -114756848 + L1_Mm LINE L1 4033 4080 -1797 4 927 302 309 0 0 chr3 44842937 44843005 -114756778 - URR1B DNA MER1_type -157 68 1 4 927 22 0 0 0 chr3 44844006 44844028 -114755755 + AT_rich Low_complexity Low_complexity 1 22 0 4 927 570 54 0 0 chr3 44844288 44844362 -114755421 + (TC)n Simple_repeat Simple_repeat 1 74 0 4 927 255 79 0 0 chr3 44844362 44844399 -114755384 + (CA)n Simple_repeat Simple_repeat 1 38 0 4 927 212 224 10 0 chr3 44844406 44844504 -114755279 + CT-rich Low_complexity Low_complexity 2 100 0 4 927 303 28 0 0 chr3 44844508 44844544 -114755239 + (CA)n Simple_repeat Simple_repeat 1 36 0 4 927 265 307 43 7 chr3 44844680 44844821 -114754962 + L1_Mur3 LINE L1 4643 4788 -1355 4 927 645 186 0 0 chr3 44845089 44845218 -114754565 + GA-rich Low_complexity Low_complexity 1 129 0 4 927 363 308 82 17 chr3 44845218 44845684 -114754099 + L1_Mur3 LINE L1 5321 5823 -57 4 927 483 107 0 0 chr3 44845772 44845847 -114753936 + (TG)n Simple_repeat Simple_repeat 2 76 0 4 927 7464 66 11 2 chr3 44846015 44847058 -114752725 + L1_Mus2 LINE L1 5515 6566 0 4 927 635 203 87 5 chr3 44848189 44848391 -114751392 - ORR1B1 LTR MaLR -128 201 1 4 927 539 226 9 0 chr3 44848391 44848506 -114751277 - ORR1B1-int LTR MaLR 0 1370 1255 4 927 1013 205 10 173 chr3 44848542 44848849 -114750934 + MT2B LTR ERVL 2 258 -343 4 927 1643 261 63 39 chr3 44848722 44849289 -114750494 + ORR1B1-int LTR MaLR 624 1204 -305 4 927 542 194 78 0 chr3 44849401 44849504 -114750279 - MT2B LTR ERVL -489 112 2 4 927 382 353 64 6 chr3 44849550 44849707 -114750076 - MTE2b LTR MaLR -9 370 205 4 927 815 265 141 13 chr3 44849708 44850006 -114749777 + Lx9 LINE L1 6957 7292 -352 4 927 3675 96 7 5 chr3 44850006 44850551 -114749232 + LTRIS_Mus LTR ERV1 68 587 0 4 927 1529 269 28 46 chr3 44850709 44851142 -114748641 - RMER19C LTR ERVK -13 598 174 4 927 314 113 0 36 chr3 44851130 44851185 -114748598 - RMER19C LTR ERVK -558 53 1 4 927 423 343 14 0 chr3 44851227 44851370 -114748413 - MTE2b LTR MaLR -163 216 72 4 927 914 92 8 0 chr3 44851376 44851507 -114748276 + B1_Mus1 SINE Alu 16 147 -1 4 927 263 62 0 59 chr3 44851510 44851561 -114748222 + (A)n Simple_repeat Simple_repeat 1 48 0 4 927 448 239 0 11 chr3 44851597 44851686 -114748097 - MTE2b LTR MaLR -281 98 11 4 927 611 127 8 0 chr3 44851914 44852032 -114747751 + (TCTA)n Simple_repeat Simple_repeat 3 121 0 4 927 224 305 171 0 chr3 44852039 44852121 -114747662 - B1F SINE Alu -21 128 33 4 927 1382 186 15 0 chr3 44852530 44852793 -114746990 - Lx2B LINE L1 -4 6996 6730 4 927 225 326 63 151 chr3 44852886 44853204 -114746579 + B4A SINE B4 3 292 0 4 927 238 204 20 0 chr3 44853220 44853269 -114746514 + (CA)n Simple_repeat Simple_repeat 1 50 0 4 927 26 50 0 0 chr3 44854937 44854977 -114744806 + AT_rich Low_complexity Low_complexity 1 40 0 4 927 320 236 28 112 chr3 44856397 44856612 -114743171 - Lx9 LINE L1 -7 7637 7441 4 927 270 296 131 15 chr3 44856618 44856755 -114743028 + Lx9 LINE L1 7275 7427 -217 4 927 324 320 79 44 chr3 44857421 44857624 -114742159 + B3 SINE B2 2 211 -5 4 927 467 240 88 2 chr3 44857681 44857884 -114741899 + L1MA4A LINE L1 5676 5907 -282 4 927 647 289 25 5 chr3 44857961 44858163 -114741620 - Lx7 LINE L1 -769 6927 6722 4 927 2234 235 22 22 chr3 44858293 44858891 -114740892 + Lx6 LINE L1 6468 7112 -584 5 927 916 349 14 3 chr3 44858898 44859257 -114740526 - Lx8 LINE L1 -741 6732 6370 5 927 455 305 84 21 chr3 44860380 44860571 -114739212 + ID_B1 SINE B4 1 203 -21 5 927 257 269 12 25 chr3 44860582 44860662 -114739121 + GA-rich Low_complexity Low_complexity 2 80 0 5 927 266 282 77 60 chr3 44860750 44860867 -114738916 + Lx8 LINE L1 7212 7330 -143 5 927 1079 196 5 57 chr3 44860879 44861090 -114738693 - ORR1A4 LTR MaLR -129 200 1 5 927 2663 184 2 2 chr3 44862739 44863240 -114736543 - L1_Mur1 LINE L1 -740 5146 4646 5 927 7483 170 19 13 chr3 44863237 44864793 -114734990 + Lx2 LINE L1 5419 6986 -11 5 927 518 318 23 23 chr3 44865353 44865569 -114734214 - B3 SINE B2 0 216 1 5 927 4480 98 21 1 chr3 44866031 44866745 -114733038 - L1_Mm LINE L1 -3892 1991 1264 5 927 14400 101 5 3 chr3 44866745 44869588 -114730195 + L1_Mus1 LINE L1 3729 6654 0 5 927 1066 82 7 0 chr3 44869902 44870048 -114729735 + B1_Mus2 SINE Alu 1 147 0 5 927 233 196 0 0 chr3 44871001 44871047 -114728736 + RLTR22_Mur LTR ERVK 1304 1349 -499 5 927 809 318 37 66 chr3 44871797 44872174 -114727609 + ORR1D2 LTR MaLR 1 366 -4 5 927 927 305 69 33 chr3 44872187 44872554 -114727229 + MTD LTR MaLR 46 421 0 5 927 400 244 10 3 chr3 44872713 44872836 -114726947 - RMER1A Other Other -18 1012 912 5 927 342 323 0 51 chr3 44874584 44874721 -114725062 - B1F SINE Alu -2 147 18 5 927 614 225 123 52 chr3 44875108 44875319 -114724464 + URR1A DNA MER1_type 1 226 0 5 927 1886 226 44 15 chr3 44875586 44876062 -114723721 + Lx4B LINE L1 6487 6976 -82 5 927 1473 54 0 0 chr3 44877224 44877410 -114722373 - B2_Mm1t SINE B2 -6 187 2 5 927 3419 18 0 0 chr3 44878305 44878699 -114721084 - L1Md_A LINE L1 0 6582 6189 5 927 541 238 8 24 chr3 44880274 44880399 -114719384 + B1_Mur3 SINE Alu 8 130 -19 5 927 3017 44 0 0 chr3 44880900 44881260 -114718523 - L1Md_F2 LINE L1 -286 6296 5937 5 927 2047 35 42 0 chr3 44881261 44881520 -114718263 + L1Md_F2 LINE L1 6313 6582 0 5 927 387 290 42 112 chr3 44881877 44881955 -114717828 + MTEb LTR MaLR 18 90 -289 5 927 1752 139 57 92 chr3 44881955 44882358 -114717425 - RLTR9C LTR ERVK -4 389 1 5 927 387 290 42 112 chr3 44882358 44882520 -114717263 + MTEb LTR MaLR 91 241 -138 5 927 725 317 87 44 chr3 44884435 44884986 -114714797 + Lx9 LINE L1 6816 7390 -254 5 927 26 0 0 0 chr3 44885181 44885207 -114714576 + AT_rich Low_complexity Low_complexity 1 26 0 5 927 1190 81 0 0 chr3 44885262 44885423 -114714360 + B2_Mm2 SINE B2 3 163 -32 5 927 252 289 19 50 chr3 44886830 44886990 -114712793 + Lx9 LINE L1 7354 7508 -136 5 927 223 269 0 0 chr3 44887002 44887054 -114712729 + (TATATG)n Simple_repeat Simple_repeat 3 54 0 5 927 3756 36 0 0 chr3 44887247 44887693 -114712090 + L1Md_T LINE L1 6137 6582 0 5 927 226 208 71 54 chr3 44888558 44888614 -114711169 - Tigger1 DNA MER2_type -871 1547 1491 5 927 405 54 0 0 chr3 44888920 44888976 -114710807 + (TTAG)n Simple_repeat Simple_repeat 3 58 0 5 927 224 30 0 29 chr3 44890947 44890981 -114708802 + (CAAAA)n Simple_repeat Simple_repeat 1 33 0 5 927 1590 96 4 44 chr3 44891067 44891317 -114708466 + L1_Mus2 LINE L1 6327 6566 0 5 927 377 370 16 0 chr3 44891525 44891652 -114708131 - B3 SINE B2 -27 189 61 5 927 228 35 0 0 chr3 44892094 44892123 -114707660 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 5 927 183 42 0 0 chr3 44892546 44892570 -114707213 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 5 927 232 243 56 0 chr3 44892985 44893092 -114706691 + (CAGAGA)n Simple_repeat Simple_repeat 6 118 0 5 927 233 211 18 0 chr3 44892988 44893045 -114706738 + GA-rich Low_complexity Low_complexity 1 58 0 5 927 423 106 0 0 chr3 44893115 44893181 -114706602 + (GA)n Simple_repeat Simple_repeat 1 66 0 5 927 334 338 80 93 chr3 44893289 44893514 -114706269 + HAL1-3A_ME LINE L1 1977 2198 -660 5 927 387 58 0 0 chr3 44893514 44893544 -114706239 + (GGGA)n Simple_repeat Simple_repeat 1 30 0 5 927 1127 21 21 0 chr3 44893544 44893688 -114706095 + (GAGAA)n Simple_repeat Simple_repeat 1 147 0 5 927 387 58 0 0 chr3 44893688 44893709 -114706074 + (GGGA)n Simple_repeat Simple_repeat 3 23 0 5 927 318 211 0 0 chr3 44895139 44895248 -114704535 + (TG)n Simple_repeat Simple_repeat 2 110 0 5 927 342 0 0 0 chr3 44895617 44895655 -114704128 + (TC)n Simple_repeat Simple_repeat 1 38 0 5 927 297 68 0 0 chr3 44895655 44895698 -114704085 + (CA)n Simple_repeat Simple_repeat 1 44 0 5 927 261 253 37 37 chr3 44896335 44896417 -114703366 + Lx8 LINE L1 7032 7113 -360 5 927 26 74 0 0 chr3 44897946 44898000 -114701783 + AT_rich Low_complexity Low_complexity 1 54 0 5 927 3449 145 8 30 chr3 44898710 44899309 -114700474 + MT2B LTR ERVL 16 601 0 5 927 189 184 143 0 chr3 44900267 44900316 -114699467 + L2c LINE L2 3328 3383 -4 5 927 1809 161 159 31 chr3 44900431 44900790 -114698993 - RLTR44A LTR ERVK 0 405 1 5 927 5429 52 6 5 chr3 44900790 44901460 -114698323 - RLTR44-int LTR ERVK 0 2812 2142 5 927 4052 311 44 47 chr3 44901680 44906501 -114693282 - RLTR44-int LTR ERVK -1436 5106 659 5 927 627 167 0 0 chr3 44906681 44906789 -114692994 - RLTR44-int LTR ERVK -1831 981 874 5 927 288 214 0 18 chr3 44906799 44906856 -114692927 - RLTR44-int LTR ERVK -2756 56 1 5 927 1792 149 142 31 chr3 44906859 44907219 -114692564 - RLTR44A LTR ERVK -5 400 1 5 927 495 33 0 0 chr3 44907523 44907584 -114692199 + (CA)n Simple_repeat Simple_repeat 2 62 0 5 927 2438 201 33 8 chr3 44907667 44908158 -114691625 + RLTR20D LTR ERVK 1 503 -65 5 927 2354 127 56 10 chr3 44908473 44908864 -114690919 + RLTR9E LTR ERVK 1 409 0 5 927 1417 214 47 47 chr3 44908867 44909250 -114690533 + ETnERV2-int LTR ERVK 4 386 -2928 5 927 3742 137 78 32 chr3 44909265 44910018 -114689765 + ETnERV2-int LTR ERVK 1071 1858 -5548 5 927 3505 59 21 15 chr3 44910031 44910510 -114689273 + LTRIS2 LTR ERV1 69 550 -14 5 927 5126 181 30 29 chr3 44910510 44911690 -114688093 + ETnERV2-int LTR ERVK 1217 3423 -3983 5 927 26688 75 106 4 chr3 44911692 44916462 -114683321 + L1Md_F2 LINE L1 332 5586 -297 5 927 7562 71 3 3 chr3 44916462 44917455 -114682328 + L1Md_F2 LINE L1 5587 6579 -3 5 927 807 40 0 0 chr3 44917490 44917589 -114682194 + (CAAAAA)n Simple_repeat Simple_repeat 6 104 0 5 927 381 211 0 84 chr3 44917589 44917708 -114682075 + MMETn-int LTR ERVK 2082 2190 -2654 5 927 15976 108 22 3 chr3 44917960 44920238 -114679545 + ETnERV2-int LTR ERVK 3441 5762 -1644 5 927 2934 183 100 100 chr3 44920230 44921266 -114678517 + MMETn-int LTR ERVK 2356 3141 -1703 5 927 1231 164 31 27 chr3 44921235 44921590 -114678193 + ETnERV2-int LTR ERVK 6127 6429 -977 5 927 512 92 10 34 chr3 44921791 44921880 -114677903 + MMETn-int LTR ERVK 7331 7406 0 5 927 2416 106 58 23 chr3 44921880 44922275 -114677508 + RLTR9E LTR ERVK 1 409 0 5 927 16130 100 6 40 chr3 44924527 44927047 -114672736 - L1_Mm LINE L1 -297 5586 3151 5 927 1154 136 0 0 chr3 44927044 44927228 -114672555 + MusHAL1 LINE L1 1771 1954 -758 5 927 7578 144 33 59 chr3 44927321 44929442 -114670341 - Lx3A LINE L1 -3 6978 4989 5 927 793 93 0 0 chr3 44929444 44929551 -114670232 + Lx3A LINE L1 4851 4957 -929 5 927 2418 86 107 6 chr3 44929948 44930311 -114669472 + MTB LTR MaLR 1 400 0 5 927 184 318 59 0 chr3 44930809 44930894 -114668889 + L2 LINE L2 1948 2037 -1382 5 927 23 54 0 0 chr3 44931230 44931267 -114668516 + AT_rich Low_complexity Low_complexity 1 37 0 5 927 450 127 0 0 chr3 44932088 44932159 -114667624 + (TA)n Simple_repeat Simple_repeat 1 71 0 5 927 21 0 0 0 chr3 44932401 44932422 -114667361 + AT_rich Low_complexity Low_complexity 1 21 0 5 927 815 201 13 3 chr3 44933076 44933371 -114666412 + CT-rich Low_complexity Low_complexity 1 297 0 5 927 226 67 44 0 chr3 44936752 44936797 -114662986 + (TA)n Simple_repeat Simple_repeat 2 48 0 5 927 951 176 18 0 chr3 44937227 44937392 -114662391 + RMER1C Other Other 1026 1193 -149 5 927 4590 181 1 59 chr3 44937941 44938897 -114660886 - Lx4B LINE L1 -4 7054 6154 5 927 528 30 0 0 chr3 44939432 44939498 -114660285 + (CA)n Simple_repeat Simple_repeat 1 66 0 5 927 206 326 22 33 chr3 44942010 44942102 -114657681 + MIR SINE MIR 71 161 -101 5 927 246 318 45 0 chr3 44942702 44942768 -114657015 - ID4_ SINE ID -3 80 12 5 927 1317 103 38 0 chr3 44943413 44943598 -114656185 + B2_Mm2 SINE B2 1 192 -3 5 927 21 71 0 0 chr3 44943688 44943730 -114656053 + AT_rich Low_complexity Low_complexity 1 42 0 5 927 1658 316 81 19 chr3 44943937 44944656 -114655127 - Lx8 LINE L1 -370 7103 6341 5 927 3133 156 28 26 chr3 44944689 44945261 -114654522 + Lx2B LINE L1 6426 6998 -2 5 927 1164 222 65 62 chr3 44945423 44945779 -114654004 + RLTR15 LTR ERVK 1 357 -2 5 927 201 256 0 0 chr3 44945853 44945896 -114653887 + A-rich Low_complexity Low_complexity 2 44 0 5 927 619 378 24 12 chr3 44945896 44946145 -114653638 - MTD LTR MaLR -143 276 25 5 927 23 101 0 0 chr3 44947044 44947123 -114652660 + AT_rich Low_complexity Low_complexity 1 79 0 5 927 3829 149 31 3 chr3 44947167 44947813 -114651970 - Lx2B LINE L1 -7 6993 6330 5 927 3232 139 2 0 chr3 44947820 44948310 -114651473 - Lx3B LINE L1 -30 5856 5366 5 927 5896 123 42 3 chr3 44948309 44949199 -114650584 + Lx3B LINE L1 5830 6753 -220 5 927 1040 109 7 0 chr3 44950843 44950990 -114648793 + B1_Mus1 SINE Alu 1 148 0 5 927 441 0 0 0 chr3 44951436 44951485 -114648298 + (TA)n Simple_repeat Simple_repeat 1 49 0 5 927 369 174 0 0 chr3 44951955 44952024 -114647759 + (CATATA)n Simple_repeat Simple_repeat 2 70 0 5 927 236 284 42 17 chr3 44952241 44952359 -114647424 - L1MCb LINE L1 -5797 248 128 5 927 303 241 0 0 chr3 44952948 44953031 -114646752 + (TATATG)n Simple_repeat Simple_repeat 6 88 0 5 927 449 331 78 26 chr3 44953032 44953044 -114646739 - B3 SINE B2 -13 203 192 5 927 1070 130 6 0 chr3 44953044 44953221 -114646562 + (TATATG)n Simple_repeat Simple_repeat 1 178 0 5 927 449 331 78 26 chr3 44953221 44953400 -114646383 - B3 SINE B2 -25 191 2 5 927 466 278 42 20 chr3 44953722 44953975 -114645808 + Lx9 LINE L1 5677 5974 -1670 5 927 1906 307 83 41 chr3 44954159 44955193 -114644590 + Lx9 LINE L1 6176 7420 -224 5 927 288 152 12 37 chr3 44955379 44955461 -114644322 + CT-rich Low_complexity Low_complexity 4 83 0 5 927 291 355 84 73 chr3 44955516 44955802 -114643981 + B4 SINE B4 4 292 0 5 927 6495 60 0 11 chr3 44955868 44956705 -114643078 + L1Md_F2 LINE L1 5745 6572 -10 6 927 29 0 0 0 chr3 44957166 44957195 -114642588 + AT_rich Low_complexity Low_complexity 1 29 0 6 927 8412 32 0 3 chr3 44957328 44957341 -114642442 - L1Md_T LINE L1 0 6582 6572 6 115 5016 164 26 29 chr3 44957341 44958309 -114641474 - Lx3B LINE L1 -5 6968 6004 6 928 39500 36 7 7 chr3 44958309 44965544 -114634239 - L1Md_T LINE L1 -11 6571 1 6 928 1722 146 17 7 chr3 44965532 44965821 -114633962 - Lx3C LINE L1 -927 6049 5758 6 928 255 325 131 40 chr3 44966355 44966531 -114633252 - Tigger5 DNA MER2_type -2209 197 6 6 928 264 269 166 23 chr3 44966581 44966756 -114633027 + L1MC LINE L1 4028 4227 -1919 6 928 37268 20 0 8 chr3 44966804 44971884 -114627899 + L1Md_A LINE L1 553 5586 -297 6 928 8559 18 7 0 chr3 44971884 44972872 -114626911 + L1Md_A LINE L1 5587 6581 -1 6 928 491 242 33 11 chr3 44972876 44973056 -114626727 + L1MC LINE L1 4242 4425 -1721 6 928 3666 62 0 11 chr3 44973219 44973694 -114626089 - L1Md_F2 LINE L1 -15 6567 6098 6 928 425 367 44 51 chr3 44973792 44974205 -114625578 + L1MC LINE L1 5348 5757 -587 6 928 411 56 0 0 chr3 44974527 44974581 -114625202 + (TG)n Simple_repeat Simple_repeat 1 54 0 6 928 595 312 88 5 chr3 44974645 44974861 -114624922 - B4A SINE B4 -23 269 36 6 928 579 213 42 56 chr3 44975048 44975192 -114624591 - B1_Mur1 SINE Alu -6 143 2 6 928 1490 33 28 0 chr3 44976017 44976199 -114623584 - B2_Mm1t SINE B2 -6 187 1 6 928 432 130 0 0 chr3 44977629 44977698 -114622085 + (TATG)n Simple_repeat Simple_repeat 3 71 0 6 928 23 54 0 0 chr3 44979683 44979720 -114620063 + AT_rich Low_complexity Low_complexity 1 37 0 6 928 2856 80 47 26 chr3 44980033 44980484 -114619299 + L1Md_F2 LINE L1 6127 6582 0 6 928 22 0 0 0 chr3 44980706 44980728 -114619055 + AT_rich Low_complexity Low_complexity 1 22 0 6 928 520 303 43 33 chr3 44980844 44981028 -114618755 + ID_B1 SINE B4 13 198 -26 6 928 228 271 0 0 chr3 44981135 44981194 -114618589 + L3 LINE CR1 2801 2859 -1630 6 928 444 269 96 37 chr3 44981294 44981429 -114618354 + B1_Mur1 SINE Alu 6 148 -1 6 928 219 161 0 0 chr3 44981638 44981694 -114618089 + A-rich Low_complexity Low_complexity 1 56 0 6 928 1851 66 4 0 chr3 44982514 44982755 -114617028 - L1Md_F2 LINE L1 -417 6165 5924 6 928 3218 84 0 5 chr3 44982755 44983250 -114616533 + L1Md_F2 LINE L1 6139 6582 0 6 928 654 297 88 51 chr3 44983261 44983634 -114616149 - Lx8 LINE L1 -6 7467 7081 6 928 416 327 29 25 chr3 44984667 44984871 -114614912 + Tigger7 DNA MER2_type 2244 2448 -43 6 928 468 0 0 0 chr3 44985121 44985173 -114614610 + (TAGA)n Simple_repeat Simple_repeat 2 53 0 6 928 21 36 0 0 chr3 44986131 44986159 -114613624 + AT_rich Low_complexity Low_complexity 1 28 0 6 928 259 160 20 0 chr3 44986281 44986331 -114613452 - MER3 DNA MER1_type -11 198 148 6 928 358 291 126 14 chr3 44986772 44986995 -114612788 + L1MA9 LINE L1 5070 5317 -826 6 928 420 258 77 22 chr3 44987155 44987337 -114612446 + L1MA9 LINE L1 5739 5930 -382 6 928 279 347 62 18 chr3 44987355 44987628 -114612155 + L1MA9 LINE L1 5958 6242 -49 6 928 315 0 0 0 chr3 44988821 44988856 -114610927 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 6 928 672 279 21 16 chr3 44989114 44989303 -114610480 - B3A SINE B2 0 198 9 6 928 869 46 0 0 chr3 44989335 44989444 -114610339 - MTB_Mm LTR MaLR 0 407 299 6 928 1569 122 8 0 chr3 44989432 44989686 -114610097 - ORR1A2-int LTR MaLR -1703 260 5 6 928 2016 133 9 27 chr3 44989690 44990023 -114609760 - ORR1A2 LTR MaLR 0 327 1 6 928 378 0 0 0 chr3 44991436 44991478 -114608305 + (A)n Simple_repeat Simple_repeat 1 42 0 6 928 818 132 0 14 chr3 44992469 44992615 -114607168 + (TTC)n Simple_repeat Simple_repeat 1 144 0 6 928 277 276 40 0 chr3 44992615 44992691 -114607092 + C-rich Low_complexity Low_complexity 4 82 0 6 928 3300 232 26 52 chr3 44992837 44993731 -114606052 - Lx2B LINE L1 0 7000 6130 6 928 7098 81 8 36 chr3 44993740 44994188 -114605595 - L1Md_F2 LINE L1 -2 6580 6133 6 928 3096 62 3 0 chr3 44994188 44994572 -114605211 - IAPEY_LTR LTR ERVK 0 385 1 6 928 23362 80 22 16 chr3 44994572 44998129 -114601654 - L1Md_F2 LINE L1 -450 6132 2546 6 928 8340 170 31 9 chr3 44998129 45000000 -114599783 - Lx2B LINE L1 -841 6159 4233 6 928 2358 155 28 0 chr3 45000005 45000438 -114599345 - L1_Mur2 LINE L1 -1650 4227 3783 1 928 21 0 0 0 chr3 45000464 45000485 -114599298 + AT_rich Low_complexity Low_complexity 1 21 0 2 928 270 300 40 10 chr3 45000620 45000721 -114599062 + Lx9 LINE L1 5859 5962 -1682 3 928 1308 252 127 14 chr3 45000916 45001422 -114598361 + Lx9 LINE L1 6596 7158 -486 3 928 433 302 78 27 chr3 45001464 45001835 -114597948 + MLT1B LTR MaLR 1 390 0 4 928 525 305 57 42 chr3 45002324 45002508 -114597275 - B3A SINE B2 -6 210 27 5 928 479 261 85 80 chr3 45003253 45003453 -114596330 + B3 SINE B2 3 203 -13 6 928 27 49 0 0 chr3 45003458 45003499 -114596284 + AT_rich Low_complexity Low_complexity 1 41 0 7 928 579 315 115 25 chr3 45003766 45004010 -114595773 - RMER1B Other Other -799 267 2 8 928 3079 226 76 152 chr3 45004321 45004672 -114595111 - L1_Mur3 LINE L1 -3021 2859 2481 9 928 5214 135 33 1 chr3 45004672 45005510 -114594273 + Lx3A LINE L1 6117 6981 0 1 928 3079 226 76 152 chr3 45005510 45006122 -114593661 - L1_Mur3 LINE L1 -3400 2480 2060 9 928 423 0 0 0 chr3 45006122 45006169 -114593614 + (TG)n Simple_repeat Simple_repeat 1 47 0 1 928 3079 226 76 152 chr3 45006169 45006750 -114593033 - L1_Mur3 LINE L1 -3821 2059 1432 9 928 779 229 81 8 chr3 45006784 45007031 -114592752 - L1_Mur3 LINE L1 -6605 1123 859 9 928 252 301 86 0 chr3 45008566 45008659 -114591124 + MER76 LTR ERVL 513 613 -78 1 928 485 249 114 40 chr3 45009752 45009928 -114589855 + B3A SINE B2 1 189 -9 1 928 21 36 0 0 chr3 45010169 45010197 -114589586 + AT_rich Low_complexity Low_complexity 1 28 0 1 928 1121 61 0 52 chr3 45010327 45010463 -114589320 + B1_Mm SINE Alu 1 135 -12 1 928 284 64 0 21 chr3 45010463 45010511 -114589272 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 1 928 1121 61 0 52 chr3 45010511 45010529 -114589254 + B1_Mm SINE Alu 136 147 0 1 928 23 78 0 0 chr3 45010966 45011017 -114588766 + AT_rich Low_complexity Low_complexity 1 51 0 1 928 1306 212 133 5 chr3 45011185 45011554 -114588229 - Lx9 LINE L1 -696 6948 6533 1 928 349 242 10 10 chr3 45011565 45011661 -114588122 - Lx9 LINE L1 -1237 6407 6312 1 928 319 273 61 24 chr3 45011802 45011967 -114587816 - Lx9 LINE L1 -1592 6052 5882 1 928 564 251 54 6 chr3 45011990 45012021 -114587762 + Lx9 LINE L1 6951 6983 -661 1 928 186 43 0 0 chr3 45012021 45012044 -114587739 + (CAAAA)n Simple_repeat Simple_repeat 1 23 0 2 928 564 251 54 6 chr3 45012044 45012180 -114587603 + Lx9 LINE L1 6984 7126 -518 1 928 525 294 28 7 chr3 45012187 45012331 -114587452 + ORR1C2 LTR MaLR 238 384 0 2 928 367 324 0 0 chr3 45012331 45012436 -114587347 - B3 SINE B2 -110 106 2 2 928 210 217 22 0 chr3 45012987 45013033 -114586750 + (TA)n Simple_repeat Simple_repeat 1 47 0 2 928 487 364 43 7 chr3 45013177 45013459 -114586324 + L1_Mur2 LINE L1 269 560 -7168 2 928 926 129 84 6 chr3 45013675 45013854 -114585929 - Lx LINE L1 -2 6652 6460 2 928 6065 184 106 19 chr3 45013963 45015028 -114584755 + L1_Mur2 LINE L1 813 1974 -3903 2 928 381 22 0 0 chr3 45015028 45015074 -114584709 + (CA)n Simple_repeat Simple_repeat 2 47 0 2 928 6065 184 81 22 chr3 45015074 45015121 -114584662 + L1_Mur2 LINE L1 1975 2047 -3830 2 928 252 59 0 0 chr3 45015121 45015155 -114584628 + (CA)n Simple_repeat Simple_repeat 2 35 0 2 928 6065 184 81 22 chr3 45015155 45015756 -114584027 + L1_Mur2 LINE L1 2048 2688 -3189 2 928 3126 51 8 8 chr3 45015756 45016150 -114583633 + MTA_Mm LTR MaLR 3 396 0 2 928 6065 184 81 22 chr3 45016150 45016316 -114583467 + L1_Mur2 LINE L1 2689 2850 -3027 2 928 1013 110 6 0 chr3 45016327 45016490 -114583293 + (GAAA)n Simple_repeat Simple_repeat 1 164 0 2 928 806 198 0 6 chr3 45016492 45016562 -114583221 + polypurine Low_complexity Low_complexity 1 70 0 3 928 1421 39 0 6 chr3 45016562 45016743 -114583040 + (GGGAA)n Simple_repeat Simple_repeat 1 180 0 3 928 806 198 0 6 chr3 45016743 45016850 -114582933 + polypurine Low_complexity Low_complexity 71 177 0 3 928 226 219 0 96 chr3 45016860 45017027 -114582756 + G-rich Low_complexity Low_complexity 1 151 0 3 928 396 0 0 0 chr3 45017031 45017075 -114582708 + (GGAAA)n Simple_repeat Simple_repeat 1 44 0 3 928 2444 166 49 82 chr3 45017075 45017685 -114582098 + L1_Mur2 LINE L1 2879 3468 -2409 2 928 707 175 21 35 chr3 45017685 45017824 -114581959 + RMER19B LTR ERVK 1 137 -765 3 928 2181 133 79 0 chr3 45017824 45018191 -114581592 - RLTR13D5 LTR ERVK 0 1023 628 3 928 829 261 88 38 chr3 45018191 45018533 -114581250 + RLTR10D LTR ERVK 1 359 0 3 928 529 220 17 0 chr3 45018580 45018698 -114581085 + IAP-d-int LTR ERVK 22 141 -6401 3 928 5283 295 27 19 chr3 45018722 45020787 -114578996 + IAP-d-int LTR ERVK 3148 5229 -1313 3 928 1407 246 6 11 chr3 45020862 45021215 -114578568 + IAP-d-int LTR ERVK 6190 6540 -2 3 928 597 270 48 26 chr3 45021217 45021445 -114578338 + RLTR10D LTR ERVK 1 233 -126 3 928 2401 106 8 29 chr3 45021423 45021909 -114577874 - RLTR13B1 LTR ERVK -374 429 1 3 928 3373 209 100 16 chr3 45021909 45022646 -114577137 + RMER19B LTR ERVK 101 902 0 3 928 1806 146 26 46 chr3 45022646 45022888 -114576895 + Lx5 LINE L1 3463 3711 -2166 4 928 4681 98 21 6 chr3 45022888 45023588 -114576195 + L1Md_F2 LINE L1 5872 6582 0 4 928 1806 146 26 46 chr3 45023588 45023696 -114576087 + Lx5 LINE L1 3712 3806 -2071 4 928 1810 96 11 11 chr3 45023698 45023973 -114575810 + RLTR13D2 LTR ERVK 728 1002 -21 4 928 707 98 10 0 chr3 45024059 45024161 -114575622 - RLTR13D2 LTR ERVK -920 103 1 4 928 5822 216 108 11 chr3 45024162 45026038 -114573745 + Lx5 LINE L1 4991 7048 -2 4 928 194 59 88 0 chr3 45026078 45026112 -114573671 + (GGGAGA)n Simple_repeat Simple_repeat 3 39 0 4 928 815 121 34 17 chr3 45026112 45026289 -114573494 + GA-rich Low_complexity Low_complexity 1 180 0 4 928 1780 214 63 6 chr3 45026301 45026787 -114572996 + L1MEf LINE L1 2042 2534 -3346 4 928 4380 86 8 2 chr3 45026797 45027402 -114572381 - L1_Mus1 LINE L1 -1 6566 5958 4 928 180 0 0 0 chr3 45027403 45027423 -114572360 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 4 928 15095 78 10 2 chr3 45027425 45030168 -114569615 - L1Md_F2 LINE L1 -19 6563 3799 4 928 8139 208 45 149 chr3 45030164 45032119 -114567664 + Lx7 LINE L1 2712 4223 -1660 5 928 1003 124 0 0 chr3 45032119 45032264 -114567519 + B1_Mm SINE Alu 2 146 -1 5 928 8139 208 45 149 chr3 45032264 45033150 -114566633 + Lx7 LINE L1 4224 5128 -755 5 928 1069 100 0 0 chr3 45033150 45033290 -114566493 + B1_Mus2 SINE Alu 2 141 -6 5 928 243 0 0 0 chr3 45033293 45033320 -114566463 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 5 928 8139 216 51 118 chr3 45033320 45034199 -114565584 + Lx7 LINE L1 5129 6078 -1618 5 928 760 260 48 103 chr3 45034199 45034692 -114565091 - RLTR11B LTR ERVK -45 482 1 5 928 402 321 71 7 chr3 45034791 45034884 -114564899 - ID_B1 SINE B4 -74 150 51 5 928 279 0 0 0 chr3 45034884 45034915 -114564868 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 5 928 402 321 71 7 chr3 45034915 45034962 -114564821 - ID SINE ID -174 50 1 5 928 468 163 0 0 chr3 45037409 45037495 -114562288 + (TATATG)n Simple_repeat Simple_repeat 2 87 0 5 928 231 61 0 0 chr3 45038471 45038504 -114561279 + (TG)n Simple_repeat Simple_repeat 2 34 0 5 928 7510 176 29 15 chr3 45039448 45042057 -114557726 + Lx4B LINE L1 4412 7054 -4 5 928 1128 88 0 0 chr3 45042061 45042208 -114557575 + B1_Mus1 SINE Alu 2 148 0 6 928 204 125 0 0 chr3 45042211 45042243 -114557540 + (TAAA)n Simple_repeat Simple_repeat 2 33 0 6 928 1820 194 34 131 chr3 45042243 45042718 -114557065 - RLTR18B LTR ERVK -83 429 1 6 928 812 202 161 0 chr3 45042827 45043020 -114556763 + URR1B DNA MER1_type 1 224 -1 6 928 372 276 20 0 chr3 45043491 45043589 -114556194 + MTE2b LTR MaLR 1 100 -279 6 928 503 358 81 18 chr3 45043567 45043789 -114555994 + MTE2b LTR MaLR 30 265 -114 6 928 5973 223 88 14 chr3 45045363 45046812 -114552971 - Lx6 LINE L1 0 7460 5906 6 928 396 0 0 0 chr3 45046971 45047015 -114552768 + (TA)n Simple_repeat Simple_repeat 1 44 0 6 928 933 185 19 93 chr3 45047901 45048141 -114551642 - RLTR25A LTR ERVK 0 1103 884 6 928 441 54 0 0 chr3 45048141 45048197 -114551586 + (TG)n Simple_repeat Simple_repeat 2 57 0 6 928 933 185 19 93 chr3 45048197 45048224 -114551559 - RLTR25A LTR ERVK -220 883 857 6 928 8343 35 0 0 chr3 45048224 45049306 -114550477 - L1Md_T LINE L1 -1 6581 5500 6 928 1490 171 92 10 chr3 45049331 45049626 -114550157 - RLTR25A LTR ERVK -248 855 537 6 928 850 262 54 120 chr3 45050481 45050832 -114548951 - MTEa LTR MaLR -3 376 49 7 928 3631 80 4 39 chr3 45051036 45051572 -114548211 + L1Md_F2 LINE L1 6066 6582 0 7 928 252 233 55 0 chr3 45052602 45052675 -114547108 + L1M4 LINE L1 877 953 -5589 7 928 552 238 10 18 chr3 45053626 45053755 -114546028 - B1_Mus2 SINE Alu -9 140 5 7 928 1116 289 30 9 chr3 45053757 45054085 -114545698 + Lx6 LINE L1 7115 7449 -11 7 928 1884 214 73 9 chr3 45054121 45054574 -114545209 - Lx5 LINE L1 -789 6261 5780 7 928 1031 199 23 47 chr3 45054561 45054819 -114544964 - Lx5 LINE L1 -585 5292 5041 7 928 258 32 0 0 chr3 45054824 45054855 -114544928 + (TCC)n Simple_repeat Simple_repeat 1 31 0 7 928 1023 220 95 18 chr3 45054863 45055085 -114544698 - RLTR11A LTR ERVK -289 239 1 7 928 29 0 0 0 chr3 45055189 45055218 -114544565 + AT_rich Low_complexity Low_complexity 1 29 0 7 928 1126 82 0 0 chr3 45055222 45055368 -114544415 + B1_Mm SINE Alu 1 146 -1 7 928 451 289 0 0 chr3 45055666 45055787 -114543996 - Tigger14a DNA MER2_type -23 301 181 8 928 21 0 0 0 chr3 45056261 45056282 -114543501 + AT_rich Low_complexity Low_complexity 1 21 0 8 928 23 0 0 0 chr3 45056331 45056354 -114543429 + AT_rich Low_complexity Low_complexity 1 23 0 8 928 2111 218 57 71 chr3 45056543 45057106 -114542677 + RMER20B LTR ERVK 73 627 0 8 928 580 322 89 0 chr3 45057195 45057210 -114542573 - B3A SINE B2 0 198 184 8 928 192 77 0 0 chr3 45057210 45057236 -114542547 + (TG)n Simple_repeat Simple_repeat 2 27 0 8 928 580 322 89 0 chr3 45057236 45057400 -114542383 - B3A SINE B2 -15 183 4 8 928 240 204 91 0 chr3 45057526 45057614 -114542169 + MER44D DNA MER2_type 492 587 -118 8 928 23 0 0 0 chr3 45058062 45058085 -114541698 + AT_rich Low_complexity Low_complexity 1 23 0 8 928 329 333 114 30 chr3 45058243 45058953 -114540830 - L1M2 LINE L1 -438 5442 4695 8 928 26 30 0 0 chr3 45060921 45060954 -114538829 + AT_rich Low_complexity Low_complexity 1 33 0 8 928 396 0 0 0 chr3 45060989 45061033 -114538750 + (CAT)n Simple_repeat Simple_repeat 2 45 0 9 928 399 299 129 14 chr3 45061124 45061276 -114538507 + B3A SINE B2 48 216 0 9 928 391 317 31 31 chr3 45061571 45061763 -114538020 - B3A SINE B2 -6 192 1 9 928 1418 302 24 7 chr3 45062349 45062734 -114537049 - Lx5 LINE L1 -17 7033 6642 9 928 213 39 0 0 chr3 45062734 45062760 -114537023 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 9 928 1418 302 24 7 chr3 45062760 45062784 -114536999 - Lx5 LINE L1 -409 6641 6617 9 928 408 309 137 5 chr3 45062812 45062838 -114536945 - Lx6 LINE L1 -711 6749 6722 9 928 7099 79 15 26 chr3 45062838 45063886 -114535897 - Lx3_Mus LINE L1 -5 7004 5968 9 928 2065 259 84 14 chr3 45063886 45064692 -114535091 - Lx6 LINE L1 -739 6721 5612 9 928 189 0 0 0 chr3 45065217 45065238 -114534545 + (CA)n Simple_repeat Simple_repeat 2 22 0 9 928 35426 35 1 0 chr3 45065346 45071195 -114528588 + L1Md_T LINE L1 1 5589 -297 9 928 8950 7 0 0 chr3 45071195 45072191 -114527592 + L1Md_T LINE L1 5590 6585 0 9 928 323 351 58 58 chr3 45072199 45072456 -114527327 - Lx8 LINE L1 -251 7222 6966 9 928 68 61 0 35 chr3 45072895 45073064 -114526719 + AT_rich Low_complexity Low_complexity 1 163 0 1 928 1047 268 56 65 chr3 45073442 45073905 -114525878 - RMER6B LTR ERVK 0 461 3 1 928 1077 194 42 0 chr3 45074302 45074518 -114525265 - URR1B DNA MER1_type 0 225 1 1 928 2227 265 90 18 chr3 45075309 45076297 -114523486 - Lx6 LINE L1 -218 7242 5958 1 928 534 167 0 0 chr3 45077041 45077149 -114522634 + CT-rich Low_complexity Low_complexity 3 110 0 1 928 226 24 71 24 chr3 45078208 45078250 -114521533 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 1 928 377 384 46 78 chr3 45078586 45078931 -114520852 - MLT1J LTR MaLR -20 492 159 1 928 264 292 126 29 chr3 45079274 45079444 -114520339 + MIR SINE MIR 40 216 -46 1 928 201 74 0 0 chr3 45081072 45081099 -114518684 + (TA)n Simple_repeat Simple_repeat 1 27 0 1 928 189 0 0 0 chr3 45081102 45081123 -114518660 + (TG)n Simple_repeat Simple_repeat 1 21 0 1 928 252 302 16 87 chr3 45081672 45081799 -114517984 + Tigger1 DNA MER2_type 734 851 -1567 1 928 260 337 41 0 chr3 45082238 45082336 -114517447 + PB1D9 SINE Alu 17 118 -2 1 928 699 12 0 0 chr3 45082879 45082959 -114516824 + (GGAGA)n Simple_repeat Simple_repeat 5 84 0 1 928 277 356 0 0 chr3 45082963 45083036 -114516747 + G-rich Low_complexity Low_complexity 1 73 0 1 928 380 169 50 60 chr3 45083036 45083218 -114516565 + GA-rich Low_complexity Low_complexity 1 180 0 1 928 438 307 152 8 chr3 45083592 45083947 -114515836 + L1ME1 LINE L1 5594 5999 -180 1 928 27 29 0 0 chr3 45084107 45084141 -114515642 + AT_rich Low_complexity Low_complexity 1 34 0 1 928 1209 252 109 9 chr3 45084306 45084646 -114515137 - ORR1D1 LTR MaLR 0 374 1 1 928 317 298 152 51 chr3 45084732 45085259 -114514524 + L1MD3 LINE L1 6749 7371 -511 1 928 209 57 0 28 chr3 45085412 45085448 -114514335 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1 928 347 340 34 24 chr3 45085496 45085710 -114514073 + L1MD3 LINE L1 7626 7949 -46 1 928 30 0 0 0 chr3 45085735 45085765 -114514018 + AT_rich Low_complexity Low_complexity 1 30 0 1 928 251 289 49 92 chr3 45087592 45087756 -114512027 - MIRb SINE MIR -2 266 110 1 928 939 119 0 0 chr3 45088104 45088280 -114511503 + (TTC)n Simple_repeat Simple_repeat 3 178 0 1 928 528 147 0 33 chr3 45088280 45088400 -114511383 + CT-rich Low_complexity Low_complexity 1 116 0 1 928 870 185 20 31 chr3 45088400 45088595 -114511188 - B2_Mm2 SINE B2 -2 193 1 1 929 27 0 0 0 chr3 45089240 45089267 -114510516 + AT_rich Low_complexity Low_complexity 1 27 0 1 929 1831 90 0 76 chr3 45089272 45089562 -114510221 - L1_Mus2 LINE L1 -1 6565 6298 1 929 352 361 21 57 chr3 45089585 45089779 -114510004 + B4A SINE B4 106 292 0 1 929 760 278 75 9 chr3 45090028 45090348 -114509435 - Lx7 LINE L1 0 7696 7356 1 929 543 208 6 22 chr3 45090348 45090530 -114509253 + GA-rich Low_complexity Low_complexity 2 180 0 1 929 3081 47 5 0 chr3 45090992 45091378 -114508405 + MTA_Mm LTR MaLR 1 388 -8 1 929 335 308 83 15 chr3 45091395 45091659 -114508124 - L1M1 LINE L1 -487 5816 5535 1 929 220 139 23 0 chr3 45091666 45091709 -114508074 + T-rich Low_complexity Low_complexity 6 49 0 1 929 720 331 28 45 chr3 45091890 45092181 -114507602 + MTE2b LTR MaLR 80 365 -14 1 929 227 312 13 0 chr3 45093269 45093346 -114506437 + GA-rich Low_complexity Low_complexity 2 79 0 1 929 303 211 0 0 chr3 45093395 45093490 -114506293 + GA-rich Low_complexity Low_complexity 1 95 0 1 929 841 299 104 15 chr3 45094206 45094474 -114505309 + B4 SINE B4 1 292 0 1 929 426 180 0 0 chr3 45094474 45094574 -114505209 + (CA)n Simple_repeat Simple_repeat 1 100 0 1 929 302 175 53 0 chr3 45094579 45094636 -114505147 + HAL1-3A_ME LINE L1 1974 2033 -825 1 929 1302 162 277 0 chr3 45094707 45095003 -114504780 + ORR1C1 LTR MaLR 1 378 0 1 929 461 318 112 39 chr3 45095353 45095710 -114504073 + MER57F LTR ERV1 6 388 -48 1 929 516 324 15 93 chr3 45096198 45096402 -114503381 + B3A SINE B2 1 188 -10 1 929 24 91 0 0 chr3 45096403 45096469 -114503314 + AT_rich Low_complexity Low_complexity 1 66 0 1 929 25 75 0 0 chr3 45096546 45096599 -114503184 + AT_rich Low_complexity Low_complexity 1 53 0 1 929 242 81 63 16 chr3 45097031 45097094 -114502689 + T-rich Low_complexity Low_complexity 1 66 0 1 929 590 221 22 161 chr3 45098210 45098454 -114501329 - RMER1B Other Other -13 1017 814 1 929 1576 109 0 0 chr3 45098454 45098683 -114501100 - Lx2 LINE L1 -10 6987 6759 1 929 590 169 6 171 chr3 45098683 45098760 -114501023 - RMER1B Other Other -191 875 798 1 929 201 51 0 114 chr3 45098767 45098811 -114500972 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 1 929 294 29 0 0 chr3 45099139 45099174 -114500609 + (TTTTG)n Simple_repeat Simple_repeat 1 35 0 1 929 21 71 0 0 chr3 45099970 45100012 -114499771 + AT_rich Low_complexity Low_complexity 1 42 0 1 929 4169 108 27 49 chr3 45100056 45100697 -114499086 - L1_Mus3 LINE L1 0 6638 6012 1 929 1037 116 0 0 chr3 45100697 45100844 -114498939 - B1_Mus2 SINE Alu 0 147 1 1 929 4169 108 27 49 chr3 45100844 45100896 -114498887 - L1_Mus3 LINE L1 -627 6011 5960 1 929 349 213 33 2 chr3 45101194 45101270 -114498513 - ORR1D1 LTR MaLR 0 384 306 1 929 575 276 90 18 chr3 45102016 45102182 -114497601 + B3 SINE B2 2 179 -37 1 929 265 265 0 29 chr3 45102257 45102327 -114497456 + B1F SINE Alu 31 98 -51 1 929 686 316 63 55 chr3 45103484 45103832 -114495951 - MTEa LTR MaLR -4 375 25 1 929 22 0 0 0 chr3 45104107 45104129 -114495654 + AT_rich Low_complexity Low_complexity 1 22 0 1 929 435 144 206 0 chr3 45104709 45104806 -114494977 - ORR1C2 LTR MaLR 0 384 268 1 929 272 318 78 33 chr3 45104868 45105021 -114494762 + MT2A LTR ERVL 230 389 -144 1 929 198 0 0 0 chr3 45105508 45105530 -114494253 + (TA)n Simple_repeat Simple_repeat 1 22 0 1 929 21 0 0 0 chr3 45105781 45105802 -114493981 + AT_rich Low_complexity Low_complexity 1 21 0 1 929 850 242 286 23 chr3 45105833 45106207 -114493576 + MT2A LTR ERVL 1 462 -71 1 929 429 141 0 0 chr3 45106249 45106320 -114493463 + (TA)n Simple_repeat Simple_repeat 2 72 0 1 929 22 0 0 0 chr3 45106542 45106564 -114493219 + AT_rich Low_complexity Low_complexity 1 22 0 1 929 3045 82 30 0 chr3 45107630 45108059 -114491724 + L1_Mus3 LINE L1 6194 6635 -3 1 929 5147 119 11 12 chr3 45108351 45109165 -114490618 - Lx3A LINE L1 -375 6606 5794 1 929 1441 258 128 5 chr3 45109179 45109568 -114490215 - Lx5 LINE L1 -46 7004 6568 1 929 4163 49 6 4 chr3 45110096 45110610 -114489173 + L1Md_F2 LINE L1 6031 6545 -37 1 929 386 186 0 0 chr3 45112157 45112227 -114487556 - B1_Mur3 SINE Alu -1 148 79 1 929 268 318 11 0 chr3 45112368 45112456 -114487327 + Lx8 LINE L1 7007 7095 -378 1 929 289 324 91 38 chr3 45112486 45112556 -114487227 + Lx8 LINE L1 7263 7331 -142 1 929 618 14 0 0 chr3 45112556 45112627 -114487156 + (TA)n Simple_repeat Simple_repeat 2 72 0 1 929 289 324 91 38 chr3 45112627 45112742 -114487041 + Lx8 LINE L1 7332 7458 -15 1 929 285 29 0 0 chr3 45113802 45113836 -114485947 + (A)n Simple_repeat Simple_repeat 1 34 0 1 929 2733 118 65 0 chr3 45114102 45114566 -114485217 - MusHAL1 LINE L1 -1068 1644 1151 1 929 387 41 0 0 chr3 45116136 45116185 -114483598 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 929 655 250 7 0 chr3 45116836 45116976 -114482807 + B1_Mur1 SINE Alu 1 141 -8 1 929 195 129 0 0 chr3 45116981 45117012 -114482771 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 1 929 21 0 0 0 chr3 45117112 45117133 -114482650 + AT_rich Low_complexity Low_complexity 1 21 0 1 929 24 53 0 0 chr3 45117253 45117291 -114482492 + AT_rich Low_complexity Low_complexity 1 38 0 1 929 325 293 80 66 chr3 45117480 45117754 -114482029 + L1MA8 LINE L1 5921 6198 -93 1 929 279 0 0 0 chr3 45118972 45119003 -114480780 + (TA)n Simple_repeat Simple_repeat 2 32 0 1 929 23 33 0 0 chr3 45119049 45119079 -114480704 + AT_rich Low_complexity Low_complexity 1 30 0 1 929 2482 88 6 3 chr3 45119182 45119526 -114480257 + L1_Mus3 LINE L1 6249 6593 -45 1 929 942 244 10 0 chr3 45119526 45119731 -114480052 - ORR1D1 LTR MaLR -163 211 5 1 929 430 256 175 0 chr3 45119768 45119859 -114479924 + ORR1D1 LTR MaLR 214 309 -65 1 929 246 62 0 0 chr3 45119859 45119891 -114479892 + (TTTTG)n Simple_repeat Simple_repeat 1 32 0 1 929 430 256 175 0 chr3 45119891 45119936 -114479847 + ORR1D1 LTR MaLR 310 373 -1 1 929 2754 120 65 7 chr3 45120036 45120481 -114479302 + L1_Mus4 LINE L1 6158 6628 -8 1 929 640 300 95 81 chr3 45121123 45121367 -114478416 + ORR1D2 LTR MaLR 3 266 -104 1 929 926 24 58 17 chr3 45121367 45121540 -114478243 + (TC)n Simple_repeat Simple_repeat 1 180 0 1 929 640 300 95 81 chr3 45121540 45121643 -114478140 + ORR1D2 LTR MaLR 267 355 -15 1 929 423 0 0 0 chr3 45121723 45121770 -114478013 + (GA)n Simple_repeat Simple_repeat 2 48 0 1 929 298 70 18 0 chr3 45122058 45122115 -114477668 - L1_Mus3 LINE L1 -2 6636 6579 1 929 1806 83 68 109 chr3 45122107 45122446 -114477337 - L1_Mus4 LINE L1 -723 5913 5589 1 929 650 99 25 0 chr3 45122461 45122618 -114477165 + L1_Mus3 LINE L1 6508 6638 0 1 929 253 303 60 111 chr3 45122884 45123118 -114476665 + L1M3e LINE L1 1625 1846 -5184 1 929 368 319 92 11 chr3 45123204 45123486 -114476297 + L1MA5 LINE L1 5804 6108 -192 1 929 28314 70 2 5 chr3 45123490 45127553 -114472230 + L1Md_F2 LINE L1 2070 6118 -464 1 929 1800 120 48 45 chr3 45127553 45127866 -114471917 + L1Md_F2 LINE L1 6253 6566 -1 1 929 367 234 47 24 chr3 45128173 45128218 -114471565 - BC1_Mm scRNA scRNA -21 131 2 1 929 399 219 37 0 chr3 45128218 45128300 -114471483 - B4 SINE B4 -206 86 2 1 929 245 391 73 46 chr3 45128571 45128831 -114470952 - L2 LINE L2 -459 2960 2694 1 929 2415 40 10 7 chr3 45129015 45129314 -114470469 + L1Md_F2 LINE L1 6246 6545 -37 1 929 207 290 16 16 chr3 45129914 45129977 -114469806 - L3 LINE CR1 -44 4445 4383 1 929 348 314 107 0 chr3 45130454 45130594 -114469189 - MER2 DNA MER2_type -164 181 27 1 929 422 296 96 24 chr3 45131630 45131921 -114467862 - L1MC LINE L1 -1910 4236 3925 2 929 2414 178 75 10 chr3 45132264 45132757 -114467026 - RLTR11A LTR ERVK -3 525 1 2 929 970 65 42 42 chr3 45132909 45133053 -114466730 + B1_Mm SINE Alu 3 146 -1 2 929 2275 36 7 0 chr3 45133535 45133811 -114465972 + L1Md_A LINE L1 6303 6580 -2 2 929 26 0 0 0 chr3 45133811 45133837 -114465946 + AT_rich Low_complexity Low_complexity 1 26 0 2 929 1011 60 0 13 chr3 45133974 45134125 -114465658 + L1Md_F2 LINE L1 6434 6582 0 2 929 192 40 0 0 chr3 45135617 45135642 -114464141 + (T)n Simple_repeat Simple_repeat 1 25 0 2 929 282 171 12 35 chr3 45135843 45135928 -114463855 + (CAAA)n Simple_repeat Simple_repeat 2 84 0 2 929 1275 26 0 0 chr3 45136587 45136738 -114463045 + (TTTC)n Simple_repeat Simple_repeat 4 154 0 2 929 396 71 0 86 chr3 45136783 45136876 -114462907 + (TTTA)n Simple_repeat Simple_repeat 1 85 0 2 929 317 65 0 21 chr3 45136876 45136923 -114462860 - B1_Mur4 SINE Alu -1 149 104 2 929 565 271 92 15 chr3 45137129 45137335 -114462448 - MTE2a LTR MaLR -9 370 149 2 929 514 187 28 78 chr3 45137354 45137534 -114462249 - Lx7 LINE L1 -239 7457 7287 2 929 771 257 165 36 chr3 45137957 45138104 -114461679 - L1_Mur3 LINE L1 -1369 4511 4367 2 929 228 35 0 0 chr3 45138104 45138133 -114461650 + (TTGG)n Simple_repeat Simple_repeat 2 30 0 2 929 771 257 165 36 chr3 45138133 45138262 -114461521 - L1_Mur3 LINE L1 -1514 4366 4186 2 929 270 0 0 0 chr3 45138262 45138292 -114461491 + (TG)n Simple_repeat Simple_repeat 2 31 0 2 929 771 257 165 36 chr3 45138292 45138401 -114461382 - L1_Mur3 LINE L1 -1695 4185 4076 2 929 284 0 0 27 chr3 45138603 45138640 -114461143 + (TTTTTG)n Simple_repeat Simple_repeat 2 37 0 2 929 25 0 0 0 chr3 45139502 45139527 -114460256 + AT_rich Low_complexity Low_complexity 1 25 0 2 929 3141 164 23 117 chr3 45141446 45142218 -114457565 - RMER6A LTR ERVK 0 756 57 2 929 278 354 61 0 chr3 45144083 45144182 -114455601 + ID_B1 SINE B4 113 217 -7 2 929 28 0 0 0 chr3 45144187 45144215 -114455568 + AT_rich Low_complexity Low_complexity 1 28 0 2 929 210 162 0 0 chr3 45144306 45144343 -114455440 + T-rich Low_complexity Low_complexity 2 38 0 2 929 189 0 0 0 chr3 45144502 45144523 -114455260 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 2 929 470 338 55 72 chr3 45144788 45145031 -114454752 - ORR1E LTR MaLR -141 233 1 2 929 1054 331 98 17 chr3 45145031 45145425 -114454358 - ORR1E-int LTR MaLR -53 1527 1100 2 929 306 255 44 111 chr3 45147418 45147599 -114452184 + L1M5 LINE L1 3669 3837 -2309 2 929 242 338 0 70 chr3 45148649 45148735 -114451048 - B1F SINE Alu -44 105 26 2 929 593 27 13 0 chr3 45150068 45150143 -114449640 + (TC)n Simple_repeat Simple_repeat 2 77 0 2 929 239 286 16 0 chr3 45150881 45150944 -114448839 - ID4_ SINE ID -18 65 2 2 929 35336 35 1 0 chr3 45152108 45157342 -114442441 + L1Md_T LINE L1 256 5589 -297 2 929 8887 8 0 4 chr3 45157342 45158342 -114441441 + L1Md_T LINE L1 5590 6585 0 2 929 402 299 66 22 chr3 45159089 45159270 -114440513 + MER3 DNA MER1_type 7 195 -14 2 929 804 265 124 69 chr3 45160415 45160560 -114439223 + ORR1D2 LTR MaLR 3 183 -187 2 929 3081 75 0 2 chr3 45160560 45160959 -114438824 + L1_Mus1 LINE L1 6170 6567 0 2 929 804 265 124 69 chr3 45160959 45161161 -114438622 + ORR1D2 LTR MaLR 184 369 -1 2 929 356 327 18 43 chr3 45161256 45161419 -114438364 - Lx8 LINE L1 -255 7218 7060 2 929 1579 195 19 90 chr3 45161711 45162093 -114437690 + RMER10B LTR ERVL 1 353 -45 2 929 675 67 0 0 chr3 45162093 45162182 -114437601 + (TA)n Simple_repeat Simple_repeat 2 90 0 2 929 1579 195 19 90 chr3 45162182 45162221 -114437562 + RMER10B LTR ERVL 354 392 -6 2 929 186 43 0 0 chr3 45162526 45162549 -114437234 + (A)n Simple_repeat Simple_repeat 1 23 0 2 929 214 192 19 0 chr3 45162897 45162949 -114436834 + (TTTG)n Simple_repeat Simple_repeat 3 55 0 2 929 637 229 0 0 chr3 45162952 45163083 -114436700 - B1F2 SINE Alu -4 145 15 2 929 450 0 0 0 chr3 45163083 45163133 -114436650 + (CA)n Simple_repeat Simple_repeat 1 50 0 2 929 360 356 113 28 chr3 45163367 45163766 -114436017 - MLT1J LTR MaLR -12 500 68 2 929 402 271 82 10 chr3 45165200 45165297 -114434486 + RSINE1 SINE B4 2 105 -60 2 929 483 87 0 0 chr3 45165345 45165414 -114434369 + (CA)n Simple_repeat Simple_repeat 2 70 0 2 929 1103 65 0 0 chr3 45165809 45165948 -114433835 + B1_Mus1 SINE Alu 5 143 -5 2 929 7137 163 6 4 chr3 45165954 45167236 -114432547 - L1_Mm LINE L1 -765 5118 3835 2 929 1619 165 46 9 chr3 45167245 45167569 -114432214 + L1_Mm LINE L1 5157 5492 -391 2 929 198 0 0 0 chr3 45169645 45169667 -114430116 + (A)n Simple_repeat Simple_repeat 1 22 0 2 929 1611 68 0 0 chr3 45170039 45170258 -114429525 + Lx3A LINE L1 2891 3109 -2777 2 929 5383 98 9 5 chr3 45170256 45171194 -114428589 + Lx3A LINE L1 5126 6064 -917 2 929 21 57 0 0 chr3 45171262 45171297 -114428486 + AT_rich Low_complexity Low_complexity 1 35 0 2 929 1021 224 93 29 chr3 45171337 45171650 -114428133 - Lx9 LINE L1 -25 7619 7287 2 929 542 337 21 32 chr3 45171654 45171844 -114427939 - B3 SINE B2 -2 214 27 2 929 26 77 0 13 chr3 45171898 45171944 -114427839 + AT_rich Low_complexity Low_complexity 1 46 0 2 929 1010 98 49 0 chr3 45171944 45172108 -114427675 + Lx3C LINE L1 6804 6975 -1 2 929 26 77 0 13 chr3 45172108 45172140 -114427643 + AT_rich Low_complexity Low_complexity 1 32 0 2 929 241 242 89 99 chr3 45172566 45172667 -114427116 + MT2B LTR ERVL 157 256 -345 2 929 728 180 70 0 chr3 45172577 45172705 -114427078 + B1_Mur4 SINE Alu 6 142 -8 2 929 22 56 0 0 chr3 45172712 45172748 -114427035 + AT_rich Low_complexity Low_complexity 1 36 0 2 929 324 0 0 0 chr3 45172840 45172876 -114426907 + (TG)n Simple_repeat Simple_repeat 2 37 0 2 929 354 253 27 0 chr3 45173037 45173112 -114426671 + B3 SINE B2 100 176 -40 2 929 26 50 0 0 chr3 45173207 45173247 -114426536 + AT_rich Low_complexity Low_complexity 1 40 0 2 929 717 116 18 9 chr3 45174354 45174467 -114425316 - PB1D9 SINE Alu -5 115 2 2 929 386 308 76 8 chr3 45176166 45176297 -114423486 + B1_Mur1 SINE Alu 2 141 -8 2 929 222 235 0 0 chr3 45177230 45177281 -114422502 + T-rich Low_complexity Low_complexity 1 51 0 2 929 288 0 0 0 chr3 45179937 45179969 -114419814 + (A)n Simple_repeat Simple_repeat 1 32 0 2 929 216 182 0 52 chr3 45181330 45181388 -114418395 + A-rich Low_complexity Low_complexity 2 56 0 2 929 261 209 0 0 chr3 45182705 45182772 -114417011 + CT-rich Low_complexity Low_complexity 1 67 0 2 929 24 32 0 0 chr3 45183063 45183094 -114416689 + AT_rich Low_complexity Low_complexity 1 31 0 2 929 249 163 0 0 chr3 45183789 45183838 -114415945 + GA-rich Low_complexity Low_complexity 1 49 0 2 929 249 98 0 0 chr3 45186360 45186401 -114413382 + (A)n Simple_repeat Simple_repeat 1 41 0 2 929 213 119 0 0 chr3 45187108 45187150 -114412633 + (T)n Simple_repeat Simple_repeat 1 42 0 2 929 28 0 0 0 chr3 45191216 45191244 -114408539 + AT_rich Low_complexity Low_complexity 1 28 0 2 929 1189 262 55 40 chr3 45193423 45193820 -114405963 - Lx6 LINE L1 -28 7432 7030 2 929 449 329 26 32 chr3 45194600 45194754 -114405029 + RSINE1 SINE B4 9 161 -4 2 929 714 93 0 0 chr3 45194755 45194863 -114404920 + (TC)n Simple_repeat Simple_repeat 1 108 0 2 929 305 336 78 0 chr3 45195023 45195151 -114404632 + B1F SINE Alu 2 139 -10 2 929 626 301 32 32 chr3 45195212 45195432 -114404351 + B4 SINE B4 2 221 -71 2 929 396 0 0 0 chr3 45195528 45195572 -114404211 + (CA)n Simple_repeat Simple_repeat 2 45 0 2 929 258 302 0 0 chr3 45197146 45197209 -114402574 - ID4 SINE ID -14 69 7 2 929 261 0 0 0 chr3 45198320 45198349 -114401434 + (A)n Simple_repeat Simple_repeat 1 29 0 2 929 26 0 0 0 chr3 45198599 45198625 -114401158 + AT_rich Low_complexity Low_complexity 1 26 0 2 929 23 0 0 0 chr3 45198993 45199016 -114400767 + AT_rich Low_complexity Low_complexity 1 23 0 2 929 471 314 59 73 chr3 45199782 45199979 -114399804 + B4A SINE B4 7 204 -88 2 929 336 24 0 0 chr3 45199979 45200020 -114399763 + (TAAAA)n Simple_repeat Simple_repeat 3 43 0 2 929 471 314 59 73 chr3 45200020 45200111 -114399672 + B4A SINE B4 205 291 -1 2 929 306 50 0 0 chr3 45200149 45200189 -114399594 + (CA)n Simple_repeat Simple_repeat 1 40 0 2 929 1096 190 42 5 chr3 45200599 45200811 -114398972 - URR1B DNA MER1_type 0 225 6 2 929 549 44 0 0 chr3 45200913 45200981 -114398802 + (TTTC)n Simple_repeat Simple_repeat 2 69 0 2 929 31 0 0 0 chr3 45203566 45203597 -114396186 + AT_rich Low_complexity Low_complexity 1 31 0 2 929 27 29 0 0 chr3 45205696 45205730 -114394053 + AT_rich Low_complexity Low_complexity 1 34 0 2 929 21 0 0 0 chr3 45206276 45206297 -114393486 + AT_rich Low_complexity Low_complexity 1 21 0 2 929 885 193 12 24 chr3 45206905 45207075 -114392708 - B2_Mm2 SINE B2 -27 168 1 2 929 853 169 7 0 chr3 45207929 45208071 -114391712 - B1_Mus1 SINE Alu -5 143 1 2 929 28 48 0 0 chr3 45209096 45209138 -114390645 + AT_rich Low_complexity Low_complexity 1 42 0 2 929 276 164 0 0 chr3 45209235 45209302 -114390481 + GA-rich Low_complexity Low_complexity 1 67 0 2 929 222 308 176 0 chr3 45210190 45210332 -114389451 + MIR SINE MIR 85 253 -15 2 929 531 56 0 0 chr3 45211339 45211410 -114388373 + (TCTA)n Simple_repeat Simple_repeat 4 74 0 2 929 25 0 0 0 chr3 45211535 45211560 -114388223 + AT_rich Low_complexity Low_complexity 1 25 0 2 929 267 292 15 0 chr3 45212640 45212705 -114387078 + ID4_ SINE ID 9 74 -9 2 929 2633 43 0 9 chr3 45212758 45213088 -114386695 + L1Md_F3 LINE L1 6246 6572 -12 2 929 249 180 0 0 chr3 45213097 45213147 -114386636 + GA-rich Low_complexity Low_complexity 2 51 0 2 929 369 0 0 0 chr3 45213281 45213322 -114386461 + (TA)n Simple_repeat Simple_repeat 1 41 0 2 929 507 17 0 0 chr3 45215096 45215156 -114384627 + (TG)n Simple_repeat Simple_repeat 1 60 0 2 929 186 133 0 0 chr3 45215240 45215270 -114384513 + (TTG)n Simple_repeat Simple_repeat 1 30 0 2 929 395 274 112 8 chr3 45215270 45215395 -114384388 - B4A SINE B4 -72 220 83 3 929 327 25 0 0 chr3 45217701 45217741 -114382042 + (TTTA)n Simple_repeat Simple_repeat 2 41 0 3 929 1204 71 0 6 chr3 45217743 45217900 -114381883 - B2_Mm2 SINE B2 -35 160 5 3 116 404 310 125 29 chr3 45219586 45219865 -114379918 + L3b LINE CR1 53 358 -124 3 930 21 0 0 0 chr3 45221042 45221063 -114378720 + AT_rich Low_complexity Low_complexity 1 21 0 3 930 753 61 0 0 chr3 45221444 45221543 -114378240 + (GGAA)n Simple_repeat Simple_repeat 3 101 0 3 930 23 54 0 0 chr3 45222908 45222945 -114376838 + AT_rich Low_complexity Low_complexity 1 37 0 3 930 38 0 0 0 chr3 45223927 45223965 -114375818 + AT_rich Low_complexity Low_complexity 1 38 0 3 930 198 0 0 0 chr3 45228784 45228806 -114370977 + (CA)n Simple_repeat Simple_repeat 2 23 0 3 930 369 0 0 0 chr3 45228820 45228861 -114370922 + (TG)n Simple_repeat Simple_repeat 1 41 0 3 930 531 254 64 108 chr3 45230117 45230320 -114369463 - B3A SINE B2 -3 195 2 3 930 608 0 14 0 chr3 45230674 45230746 -114369037 + (TG)n Simple_repeat Simple_repeat 1 73 0 3 930 549 271 25 108 chr3 45230787 45231027 -114368756 - RMER15 LTR ERVL -329 246 27 3 930 663 209 231 0 chr3 45231038 45231220 -114368563 - URR1A DNA MER1_type 0 226 3 3 930 259 316 32 0 chr3 45232106 45232201 -114367582 - HERVL74-int LTR ERVL -2428 3257 3160 3 930 640 352 51 13 chr3 45232227 45232463 -114367320 + B4A SINE B4 48 292 0 3 930 802 282 122 24 chr3 45233036 45233330 -114366453 - MTD LTR MaLR -77 342 20 3 930 306 395 79 40 chr3 45234395 45234622 -114365161 - HAL1 LINE L1 -1697 810 575 3 930 583 274 73 28 chr3 45236427 45236675 -114363108 + MLT1F2 LTR MaLR 302 560 0 3 930 342 0 0 0 chr3 45236834 45236872 -114362911 + (CA)n Simple_repeat Simple_repeat 2 39 0 3 930 371 339 43 0 chr3 45237568 45237683 -114362100 + B3A SINE B2 3 122 -76 3 930 26 0 0 0 chr3 45237994 45238020 -114361763 + AT_rich Low_complexity Low_complexity 1 26 0 3 930 1288 89 0 0 chr3 45238440 45238619 -114361164 - MusHAL1 LINE L1 -965 1747 1569 3 930 980 157 55 5 chr3 45238619 45238818 -114360965 + Lx LINE L1 6444 6652 -2 3 930 898 132 44 0 chr3 45238816 45238975 -114360808 - Lx2A1 LINE L1 -14 6994 6829 3 930 1006 132 82 0 chr3 45238975 45239134 -114360649 - Lx2A1 LINE L1 -286 6722 6551 3 930 945 158 66 0 chr3 45239143 45239326 -114360457 - B2_Mm2 SINE B2 0 195 1 3 930 400 333 44 0 chr3 45240843 45240978 -114358805 + RMER15 LTR ERVL 422 562 -13 3 930 213 65 0 0 chr3 45241497 45241528 -114358255 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 3 930 441 349 30 64 chr3 45241633 45241866 -114357917 + B4A SINE B4 2 226 -66 3 930 334 268 165 0 chr3 45241874 45242001 -114357782 + B1_Mus1 SINE Alu 1 148 0 3 930 743 133 0 8 chr3 45242009 45242138 -114357645 + (GGAA)n Simple_repeat Simple_repeat 2 129 0 3 930 256 286 0 0 chr3 45242265 45242335 -114357448 + T-rich Low_complexity Low_complexity 1 70 0 3 930 481 264 86 166 chr3 45242782 45243072 -114356711 + MTE2a LTR MaLR 20 286 -93 3 930 2644 237 37 117 chr3 45243072 45244079 -114355704 + RMER17B LTR ERVK 1 926 -32 3 930 28 0 0 0 chr3 45244409 45244437 -114355346 + AT_rich Low_complexity Low_complexity 1 28 0 3 930 1169 303 66 17 chr3 45244991 45245671 -114354112 + L1_Mur3 LINE L1 69 682 -7046 3 930 7235 198 67 51 chr3 45245669 45248031 -114351752 + L1_Mur3 LINE L1 901 3306 -2574 3 930 871 228 22 0 chr3 45248033 45248217 -114351566 + Lx6 LINE L1 7267 7454 -6 3 930 27 0 0 0 chr3 45248308 45248335 -114351448 + AT_rich Low_complexity Low_complexity 1 27 0 3 930 312 27 0 0 chr3 45248471 45248508 -114351275 + (TG)n Simple_repeat Simple_repeat 2 38 0 3 930 236 172 17 0 chr3 45248518 45248576 -114351207 + (TA)n Simple_repeat Simple_repeat 1 59 0 3 930 180 0 0 0 chr3 45248871 45248891 -114350892 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 3 930 208 241 0 0 chr3 45248951 45249009 -114350774 + T-rich Low_complexity Low_complexity 1 58 0 3 930 39 60 0 0 chr3 45249032 45249099 -114350684 + AT_rich Low_complexity Low_complexity 1 67 0 3 930 830 306 39 22 chr3 45249252 45249563 -114350220 - MTE2b LTR MaLR -3 376 61 3 930 3388 140 27 10 chr3 45251030 45251616 -114348167 - Lx4A LINE L1 -3 7055 6460 3 930 693 114 0 0 chr3 45253561 45253666 -114346117 + (GA)n Simple_repeat Simple_repeat 1 105 0 3 930 261 295 13 13 chr3 45253964 45254043 -114345740 + ID4 SINE ID 3 81 -2 3 930 1755 135 101 0 chr3 45254246 45254542 -114345241 - ORR1A3 LTR MaLR 0 326 1 3 930 230 329 116 0 chr3 45255602 45255827 -114343956 + L1ME3A LINE L1 5914 6164 -9 3 930 374 350 14 7 chr3 45256073 45256211 -114343572 + RMER15 LTR ERVL 421 559 -16 3 930 381 328 47 91 chr3 45256520 45256795 -114342988 + MT2A LTR ERVL 231 493 -40 3 930 2177 285 56 14 chr3 45256876 45257612 -114342171 + RCHARR1 DNA MER1_type 29 795 -179 3 930 715 271 28 9 chr3 45257620 45257836 -114341947 - Lx6 LINE L1 -11 7449 7230 3 930 402 21 0 0 chr3 45257889 45257936 -114341847 + (TA)n Simple_repeat Simple_repeat 1 47 0 3 930 1881 295 81 12 chr3 45257996 45258714 -114341069 + Lx5 LINE L1 6455 7050 0 3 930 1413 221 83 126 chr3 45259474 45259910 -114339873 + MTC LTR MaLR 5 421 0 3 930 5280 199 45 42 chr3 45259909 45261012 -114338771 + MTC-int LTR MaLR 2 1099 -159 3 930 1218 92 5 21 chr3 45261012 45261200 -114338583 + L1_Mus2 LINE L1 6382 6566 0 3 930 5280 199 45 42 chr3 45261200 45261343 -114338440 + MTC-int LTR MaLR 1100 1252 -6 3 930 1658 236 75 21 chr3 45261348 45261734 -114338049 + MTC LTR MaLR 1 407 -14 3 930 1502 91 87 0 chr3 45261800 45262041 -114337742 - L1_Mus4 LINE L1 0 6636 6375 3 930 329 336 17 26 chr3 45262186 45262302 -114337481 - B3 SINE B2 -99 117 3 3 930 21 0 0 0 chr3 45264047 45264068 -114335715 + AT_rich Low_complexity Low_complexity 1 21 0 3 930 241 135 19 19 chr3 45264252 45264305 -114335478 + (TA)n Simple_repeat Simple_repeat 2 54 0 3 930 390 141 0 23 chr3 45265377 45265464 -114334319 + L1_Mus2 LINE L1 6482 6566 0 3 930 764 100 0 8 chr3 45265468 45265582 -114334201 - L1_Mm LINE L1 -1861 4022 3909 3 930 2542 54 56 6 chr3 45265582 45265920 -114333863 + L1_Mus2 LINE L1 6211 6565 -1 3 930 3651 134 194 11 chr3 45266115 45266531 -114333252 + RMER17A2 LTR ERVK 1 445 -461 3 930 450 0 0 0 chr3 45266531 45266581 -114333202 + (TC)n Simple_repeat Simple_repeat 1 50 0 3 930 3651 134 194 11 chr3 45266581 45266920 -114332863 + RMER17A2 LTR ERVK 446 894 -12 3 930 1139 206 0 9 chr3 45267001 45267226 -114332557 - URR1B DNA MER1_type -1 224 2 3 930 1503 148 0 0 chr3 45270617 45270853 -114328930 + L1_Mm LINE L1 5476 5711 -172 3 930 899 170 6 0 chr3 45270853 45271024 -114328759 + Lx2 LINE L1 6826 6997 0 3 930 1398 227 170 89 chr3 45272116 45272342 -114327441 + RMER6D LTR ERVK 41 350 -370 3 930 339 136 0 0 chr3 45272342 45272401 -114327382 + (CAGTT)n Simple_repeat Simple_repeat 2 60 0 3 930 1398 227 170 89 chr3 45272401 45272802 -114326981 + RMER6D LTR ERVK 351 719 -1 3 930 3631 69 6 0 chr3 45272806 45273283 -114326500 + L1Md_F3 LINE L1 5107 5586 -297 3 930 8229 32 4 4 chr3 45273284 45274267 -114325516 + L1Md_F3 LINE L1 5588 6570 -14 3 930 1274 207 17 164 chr3 45274299 45274446 -114325337 - Lx5 LINE L1 -1020 6030 5905 3 930 1078 78 7 0 chr3 45274446 45274587 -114325196 - B1_Mus2 SINE Alu -5 142 1 3 930 3399 207 17 164 chr3 45274587 45274806 -114324977 - Lx5 LINE L1 -1146 5904 5700 3 930 315 0 0 0 chr3 45274806 45274841 -114324942 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 3 930 3399 212 79 61 chr3 45274841 45275406 -114324377 - Lx5 LINE L1 -178 5699 5163 3 930 207 0 0 0 chr3 45275406 45275429 -114324354 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 3 930 3399 212 79 61 chr3 45275429 45275693 -114324090 - Lx5 LINE L1 -715 5162 4833 3 930 3227 158 19 18 chr3 45275694 45276262 -114323521 + Lx4A LINE L1 6487 7055 -3 3 930 2457 281 96 10 chr3 45276302 45277139 -114322644 + Lx6 LINE L1 6262 7404 -56 3 930 346 42 0 0 chr3 45277302 45277350 -114322433 - L1_Mus2 LINE L1 0 6566 6519 3 930 673 216 106 25 chr3 45278247 45278446 -114321337 - B3 SINE B2 0 216 2 3 930 915 302 67 7 chr3 45279142 45279442 -114320341 + Lx3C LINE L1 6656 6973 -3 3 930 704 111 0 8 chr3 45279601 45279719 -114320064 + (TG)n Simple_repeat Simple_repeat 2 118 0 3 930 1516 83 37 0 chr3 45279918 45280134 -114319649 + L1_Mus1 LINE L1 6344 6567 0 3 930 314 262 130 8 chr3 45280419 45280542 -114319241 - Lx7 LINE L1 0 7696 7559 3 930 294 138 0 0 chr3 45280624 45280682 -114319101 + (CA)n Simple_repeat Simple_repeat 2 59 0 3 930 5103 272 47 28 chr3 45280703 45282723 -114317060 + Lx6 LINE L1 5406 7460 0 3 930 28 29 0 0 chr3 45282780 45282815 -114316968 + AT_rich Low_complexity Low_complexity 1 35 0 3 930 261 314 45 34 chr3 45283718 45283807 -114315976 - ORR1E LTR MaLR -243 116 27 3 930 3072 128 37 10 chr3 45284288 45284800 -114314983 - Lx3B LINE L1 0 6973 6448 3 930 1468 113 52 4 chr3 45284812 45285043 -114314740 - L1_Mus3 LINE L1 -2 6636 6395 3 930 1690 72 36 0 chr3 45285043 45285264 -114314519 + L1_Mus3 LINE L1 6168 6396 -242 3 930 331 323 31 8 chr3 45285297 45285425 -114314358 - B3A SINE B2 -66 132 2 3 930 206 0 69 0 chr3 45285864 45285893 -114313890 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 3 930 1095 72 0 19 chr3 45286121 45286278 -114313505 + L1Md_F3 LINE L1 6410 6563 -21 3 930 359 353 51 65 chr3 45286293 45286430 -114313353 + MTEa LTR MaLR 168 309 -70 3 930 348 127 0 0 chr3 45286430 45286485 -114313298 + (CAGA)n Simple_repeat Simple_repeat 2 56 0 3 930 359 353 51 65 chr3 45286485 45286562 -114313221 + MTEa LTR MaLR 310 379 0 3 930 594 0 0 0 chr3 45286772 45286838 -114312945 + (TTTA)n Simple_repeat Simple_repeat 4 69 0 3 930 972 101 20 0 chr3 45286838 45286986 -114312797 - B2_Mm2 SINE B2 -44 151 1 3 930 248 220 0 33 chr3 45287751 45287812 -114311971 - Charlie9 DNA MER1_type -35 2722 2664 3 930 628 291 0 96 chr3 45289230 45289397 -114310386 + RSINE1 SINE B4 15 165 0 3 930 3670 141 8 3 chr3 45290322 45290914 -114308869 - Lx3B LINE L1 -5 6968 6374 3 930 360 350 221 21 chr3 45292791 45293176 -114306607 + L1MCa LINE L1 267 728 -5780 4 930 426 20 0 0 chr3 45293657 45293708 -114306075 + (TA)n Simple_repeat Simple_repeat 2 52 0 4 930 216 0 0 0 chr3 45293708 45293731 -114306052 + (TG)n Simple_repeat Simple_repeat 1 24 0 4 930 559 333 92 80 chr3 45293933 45294717 -114305066 + HAL1 LINE L1 585 1377 -1130 4 930 193 57 28 28 chr3 45295066 45295102 -114304681 + (TTTC)n Simple_repeat Simple_repeat 1 36 0 4 930 1351 34 6 16 chr3 45295103 45295285 -114304498 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 4 930 232 211 35 0 chr3 45295842 45295899 -114303884 + MTEb LTR MaLR 290 348 -31 4 930 216 135 0 0 chr3 45296824 45296861 -114302922 + (T)n Simple_repeat Simple_repeat 1 37 0 4 930 467 314 55 30 chr3 45297975 45298175 -114301608 - RMER15 LTR ERVL 0 575 371 4 930 447 19 0 0 chr3 45298181 45298233 -114301550 + (CAAAC)n Simple_repeat Simple_repeat 2 53 0 4 930 23 0 0 0 chr3 45299379 45299402 -114300381 + AT_rich Low_complexity Low_complexity 1 23 0 4 930 1555 143 4 0 chr3 45299436 45299673 -114300110 - Lx2 LINE L1 -345 6652 6415 4 930 257 172 0 33 chr3 45300191 45300251 -114299532 + (CATATA)n Simple_repeat Simple_repeat 3 60 0 4 930 328 304 33 42 chr3 45300252 45300372 -114299411 - RMER12 LTR ERVK -471 851 733 4 930 1730 333 36 20 chr3 45300475 45301205 -114298578 + Lx8 LINE L1 6266 7006 -467 4 930 3928 218 62 53 chr3 45301307 45301524 -114298259 + L1Md_F LINE L1 31 257 -6467 4 930 2217 110 40 60 chr3 45301524 45301922 -114297861 + RLTR10 LTR ERVK 1 390 0 4 930 26790 92 9 9 chr3 45301922 45306631 -114293152 + L1Md_F LINE L1 258 4955 -928 4 930 225 0 0 0 chr3 45307022 45307047 -114292736 + (TG)n Simple_repeat Simple_repeat 2 26 0 4 930 240 35 0 0 chr3 45307626 45307655 -114292128 + (TG)n Simple_repeat Simple_repeat 2 30 0 4 930 34 0 0 0 chr3 45308290 45308324 -114291459 + AT_rich Low_complexity Low_complexity 1 34 0 4 930 425 141 34 34 chr3 45308403 45308491 -114291292 + MTC LTR MaLR 9 96 -325 4 930 12197 76 13 2 chr3 45308491 45310152 -114289631 + L1Md_F2 LINE L1 3908 5586 -297 4 930 7103 70 26 5 chr3 45310153 45311115 -114288668 + L1Md_F2 LINE L1 5588 6569 -13 4 930 1248 142 111 31 chr3 45311168 45311429 -114288354 - Lx LINE L1 -6 6648 6367 4 930 761 255 75 0 chr3 45311459 45311647 -114288136 + MTC LTR MaLR 175 376 -45 4 930 225 94 0 0 chr3 45311723 45311755 -114288028 + (T)n Simple_repeat Simple_repeat 1 32 0 4 930 3211 203 34 50 chr3 45312295 45313509 -114286274 + L1_Mur3 LINE L1 497 1685 -4195 4 930 3309 46 0 0 chr3 45313509 45313901 -114285882 - MTA_Mm LTR MaLR -4 392 1 4 930 6861 72 74 51 chr3 45313902 45314975 -114284808 - MTA_Mm-int LTR MaLR -1 1097 1 4 930 3401 23 10 0 chr3 45314975 45315367 -114284416 - MTA_Mm LTR MaLR 0 396 1 4 930 2572 183 35 30 chr3 45315367 45315503 -114284280 + L1_Mur3 LINE L1 1686 1812 -4068 4 930 612 280 82 45 chr3 45315470 45315713 -114284070 + Lx7 LINE L1 6992 7243 -453 4 930 468 238 109 41 chr3 45315726 45315983 -114283800 + RLTR20B2 LTR ERVK 1 279 -298 4 930 585 64 0 0 chr3 45315983 45316061 -114283722 + (GGGA)n Simple_repeat Simple_repeat 2 79 0 4 930 1367 256 40 50 chr3 45316066 45316498 -114283285 + RLTR20B3 LTR ERVK 126 577 0 4 930 181 128 43 0 chr3 45316643 45316690 -114283093 + (TA)n Simple_repeat Simple_repeat 1 49 0 4 930 942 290 3 40 chr3 45316723 45317071 -114282712 + Lx7 LINE L1 7357 7691 -5 4 930 224 233 0 0 chr3 45317075 45317118 -114282665 + A-rich Low_complexity Low_complexity 1 43 0 4 930 234 340 83 7 chr3 45317118 45317263 -114282520 + RMER12 LTR ERVK 701 856 -466 4 930 279 0 0 0 chr3 45317527 45317558 -114282225 + (TTAA)n Simple_repeat Simple_repeat 4 34 0 4 930 9017 3 0 0 chr3 45317744 45318740 -114281043 + L1Md_A LINE L1 5587 6582 0 4 930 22 0 0 0 chr3 45318895 45318917 -114280866 + AT_rich Low_complexity Low_complexity 1 22 0 4 930 26 50 0 0 chr3 45319216 45319256 -114280527 + AT_rich Low_complexity Low_complexity 1 40 0 4 930 304 190 25 0 chr3 45320021 45320100 -114279683 + CT-rich Low_complexity Low_complexity 1 81 0 4 930 252 338 67 67 chr3 45320770 45321024 -114278759 - Lx8 LINE L1 -17 7456 7203 4 930 3279 48 2 0 chr3 45321645 45322040 -114277743 + MTA_Mm LTR MaLR 1 396 0 4 930 2578 88 3 0 chr3 45322198 45322541 -114277242 - L1_Mus2 LINE L1 0 6566 6223 4 930 432 279 80 21 chr3 45322799 45322986 -114276797 - B3A SINE B2 0 198 1 4 930 207 0 0 0 chr3 45322993 45323016 -114276767 + (TA)n Simple_repeat Simple_repeat 1 23 0 4 930 238 354 99 33 chr3 45323776 45323928 -114275855 + L3 LINE CR1 4193 4354 -135 4 930 22 56 0 0 chr3 45324531 45324567 -114275216 + AT_rich Low_complexity Low_complexity 1 36 0 4 930 531 0 0 0 chr3 45324894 45324953 -114274830 + (TC)n Simple_repeat Simple_repeat 2 60 0 4 930 405 0 0 0 chr3 45324955 45325000 -114274783 + (CA)n Simple_repeat Simple_repeat 2 46 0 4 930 284 336 110 49 chr3 45325070 45325303 -114274480 + RMER12 LTR ERVK 707 958 -364 4 930 261 0 0 0 chr3 45325303 45325332 -114274451 + (GA)n Simple_repeat Simple_repeat 2 30 0 4 930 284 336 110 49 chr3 45325332 45325361 -114274422 + RMER12 LTR ERVK 959 984 -338 4 930 420 169 0 0 chr3 45325361 45325438 -114274345 + (TG)n Simple_repeat Simple_repeat 2 78 0 4 930 1207 133 55 43 chr3 45326551 45326786 -114272997 - RLTR11B LTR ERVK -2 451 214 4 930 1529 170 20 7 chr3 45326791 45327087 -114272696 + RLTR11A LTR ERVK 229 528 0 4 930 879 315 84 0 chr3 45327196 45327504 -114272279 + RMER15 LTR ERVL 229 562 -13 4 930 23 0 0 0 chr3 45327648 45327671 -114272112 + AT_rich Low_complexity Low_complexity 1 23 0 4 930 5717 102 67 7 chr3 45329330 45330200 -114269583 + L1Md_F2 LINE L1 5661 6582 0 4 930 403 334 105 27 chr3 45330214 45330546 -114269237 + Lx8 LINE L1 5808 6165 -1308 4 930 465 66 0 0 chr3 45330570 45330631 -114269152 + (CA)n Simple_repeat Simple_repeat 2 62 0 4 930 1759 337 81 10 chr3 45330643 45331536 -114268247 + Lx8 LINE L1 6258 7213 -260 4 930 575 52 0 0 chr3 45332162 45332239 -114267544 - B1_Mm SINE Alu 0 147 71 4 930 356 104 0 0 chr3 45332239 45332287 -114267496 + L1_Mm LINE L1 5564 5611 -272 4 930 562 204 15 8 chr3 45332716 45332849 -114266934 - L1_Mur3 LINE L1 -2018 3862 3729 4 930 2559 321 43 90 chr3 45332859 45333863 -114265920 + Lx5 LINE L1 5728 6681 -369 4 930 297 0 0 0 chr3 45333863 45333896 -114265887 + (CA)n Simple_repeat Simple_repeat 2 34 0 4 930 513 0 0 0 chr3 45333896 45333952 -114265831 + (GA)n Simple_repeat Simple_repeat 2 58 0 4 930 2559 321 43 90 chr3 45333952 45334319 -114265464 + Lx5 LINE L1 6682 7034 -16 4 930 426 39 0 0 chr3 45334332 45334384 -114265399 + (TA)n Simple_repeat Simple_repeat 1 52 0 4 930 298 299 0 20 chr3 45334560 45334659 -114265124 - Lx8 LINE L1 -203 7270 7174 4 930 1072 194 49 14 chr3 45334679 45334927 -114264856 - ORR1B2 LTR MaLR -5 379 140 4 930 884 301 112 35 chr3 45334892 45335240 -114264543 + MTD LTR MaLR 24 398 -21 4 930 1235 286 91 63 chr3 45335255 45335807 -114263976 - RMER15 LTR ERVL -8 567 1 4 930 5279 54 1 35 chr3 45336364 45337076 -114262707 - L1Md_F2 LINE L1 0 6582 5895 4 930 753 125 17 0 chr3 45337077 45337197 -114262586 + L1Md_A LINE L1 441 562 -6162 4 930 765 104 28 34 chr3 45337888 45338067 -114261716 + (TCTA)n Simple_repeat Simple_repeat 3 180 0 4 930 7901 112 39 12 chr3 45338681 45339894 -114259889 - Lx3C LINE L1 -27 6949 5705 4 930 30 45 0 0 chr3 45340898 45340942 -114258841 + AT_rich Low_complexity Low_complexity 1 44 0 4 930 2408 135 15 15 chr3 45341911 45342317 -114257466 - Lx2 LINE L1 0 6997 6592 4 930 294 349 0 0 chr3 45343174 45343306 -114256477 - L1MA9 LINE L1 -2 6310 6179 4 930 1290 71 15 10 chr3 45343420 45343618 -114256165 - L1Md_F2 LINE L1 0 6582 6384 4 930 249 271 103 29 chr3 45343990 45344165 -114255618 - Lx9 LINE L1 -51 7593 7406 4 930 475 56 28 0 chr3 45344905 45344976 -114254807 + (TCTA)n Simple_repeat Simple_repeat 2 74 0 4 930 3293 231 78 24 chr3 45346093 45346962 -114252821 + Lx5 LINE L1 6077 6992 -58 4 930 227 209 180 34 chr3 45346965 45347054 -114252729 + Lx5 LINE L1 6906 7007 -43 4 930 260 53 0 26 chr3 45347070 45347109 -114252674 + (TAAA)n Simple_repeat Simple_repeat 2 39 0 4 930 575 305 17 35 chr3 45347492 45347665 -114252118 - B3 SINE B2 -42 174 5 4 930 270 0 0 0 chr3 45347778 45347808 -114251975 + (CA)n Simple_repeat Simple_repeat 2 31 0 4 930 531 285 98 51 chr3 45348042 45348316 -114251467 + Lx8 LINE L1 7180 7466 -7 4 930 227 259 0 0 chr3 45349269 45349327 -114250456 - L1MC1 LINE L1 -16 6317 6260 4 116 920 268 41 117 chr3 45350371 45350983 -114248800 + RMER19C LTR ERVK 1 495 -116 4 931 3778 190 51 48 chr3 45351000 45351883 -114247900 - RMER13B LTR ERVK -22 886 1 4 931 543 178 67 8 chr3 45351883 45352002 -114247781 + RMER19B LTR ERVK 777 902 0 4 931 27 29 0 0 chr3 45352006 45352040 -114247743 + AT_rich Low_complexity Low_complexity 1 34 0 4 931 666 37 0 0 chr3 45352139 45352220 -114247563 + (TA)n Simple_repeat Simple_repeat 1 81 0 4 931 200 271 52 10 chr3 45352318 45352415 -114247368 + CT-rich Low_complexity Low_complexity 2 102 0 4 931 22 0 0 0 chr3 45352515 45352537 -114247246 + AT_rich Low_complexity Low_complexity 1 22 0 4 931 21 36 0 0 chr3 45352587 45352615 -114247168 + AT_rich Low_complexity Low_complexity 1 28 0 4 931 387 0 0 0 chr3 45352714 45352757 -114247026 + (TATG)n Simple_repeat Simple_repeat 2 44 0 4 931 216 0 0 0 chr3 45352757 45352780 -114247003 + (TTCA)n Simple_repeat Simple_repeat 1 24 0 4 931 3183 192 52 14 chr3 45352781 45353421 -114246362 - Lx4B LINE L1 -17 7041 6378 4 931 1561 113 56 8 chr3 45353421 45353670 -114246113 - L1Md_F2 LINE L1 -1 6581 6321 4 931 5591 50 27 0 chr3 45353670 45354377 -114245406 + L1Md_F2 LINE L1 5636 6361 -221 4 931 17987 174 30 10 chr3 45354357 45358431 -114241352 - Lx4B LINE L1 -668 6390 2232 4 931 307 183 14 0 chr3 45359404 45359475 -114240308 - Lx9 LINE L1 -7 7637 7566 4 931 21 0 0 0 chr3 45360088 45360109 -114239674 + AT_rich Low_complexity Low_complexity 1 21 0 4 931 3023 81 7 2 chr3 45360559 45360969 -114238814 - L1_Mus3 LINE L1 -11 6627 6216 4 931 336 24 0 0 chr3 45361118 45361159 -114238624 + (TCTCTG)n Simple_repeat Simple_repeat 2 42 0 5 931 189 121 0 0 chr3 45361168 45361201 -114238582 + (TG)n Simple_repeat Simple_repeat 2 34 0 5 931 913 226 18 9 chr3 45362459 45362678 -114237105 - URR1B DNA MER1_type 0 225 5 5 931 316 317 78 10 chr3 45362865 45362967 -114236816 - RSINE1 SINE B4 -28 137 29 5 931 561 322 6 39 chr3 45363008 45363109 -114236674 + B3A SINE B2 2 98 -100 5 931 6551 78 29 7 chr3 45363109 45364018 -114235765 - RLTR13B3 LTR ERVK 0 929 1 5 931 561 322 6 39 chr3 45364018 45364097 -114235686 + B3A SINE B2 99 176 -22 5 931 264 59 0 0 chr3 45364097 45364131 -114235652 + (TTAA)n Simple_repeat Simple_repeat 1 34 0 5 931 408 315 112 39 chr3 45364183 45364513 -114235270 - L1MB2 LINE L1 -319 5852 5499 5 931 495 333 21 11 chr3 45365490 45365678 -114234105 + B3A SINE B2 3 192 -6 5 931 398 294 18 18 chr3 45367736 45367847 -114231936 + B3A SINE B2 2 112 -86 5 931 447 293 44 34 chr3 45368083 45368287 -114231496 - Lx9 LINE L1 -322 7322 6990 5 931 441 0 0 0 chr3 45369173 45369222 -114230561 + (TTTTG)n Simple_repeat Simple_repeat 2 50 0 5 931 1148 30 0 0 chr3 45369224 45369357 -114230426 - B1_Mm SINE Alu -12 135 3 5 931 4471 158 70 0 chr3 45372321 45373123 -114226660 + Lx2 LINE L1 6140 6997 0 5 931 180 111 0 0 chr3 45373153 45373180 -114226603 + (A)n Simple_repeat Simple_repeat 1 27 0 5 931 527 314 56 41 chr3 45373345 45373541 -114226242 + B3A SINE B2 4 202 -14 5 931 180 200 0 0 chr3 45373563 45373603 -114226180 + (CATATA)n Simple_repeat Simple_repeat 1 40 0 5 931 489 88 0 0 chr3 45375965 45376045 -114223738 + (T)n Simple_repeat Simple_repeat 1 80 0 5 931 586 242 0 0 chr3 45376045 45376165 -114223618 - PB1D7 SINE Alu 0 120 1 5 931 468 0 0 0 chr3 45376922 45376974 -114222809 + (CA)n Simple_repeat Simple_repeat 2 53 0 5 931 268 291 142 28 chr3 45377783 45377889 -114221894 - B4A SINE B4 -171 121 4 5 931 249 250 0 15 chr3 45378010 45378075 -114221708 + (TG)n Simple_repeat Simple_repeat 1 64 0 5 931 387 58 27 63 chr3 45378190 45378301 -114221482 + (TTTTTG)n Simple_repeat Simple_repeat 2 108 0 5 931 1117 54 7 26 chr3 45378307 45378458 -114221325 - B1_Mus1 SINE Alu 0 148 1 5 931 952 65 0 0 chr3 45378613 45378736 -114221047 + B1_Mus1 SINE Alu 26 148 0 5 931 220 234 0 0 chr3 45378736 45378783 -114221000 + A-rich Low_complexity Low_complexity 1 47 0 5 931 510 173 0 0 chr3 45379185 45379289 -114220494 + (TA)n Simple_repeat Simple_repeat 2 105 0 5 931 189 0 0 0 chr3 45380761 45380782 -114219001 + (ATTG)n Simple_repeat Simple_repeat 4 24 0 5 931 308 351 44 0 chr3 45380816 45380930 -114218853 - RSINE1 SINE B4 -44 121 3 5 931 30 0 0 0 chr3 45381008 45381038 -114218745 + AT_rich Low_complexity Low_complexity 1 30 0 5 931 761 259 12 0 chr3 45381619 45381789 -114217994 + Lx5 LINE L1 6539 6710 -340 5 931 27 0 0 0 chr3 45381882 45381909 -114217874 + AT_rich Low_complexity Low_complexity 1 27 0 5 931 22 35 0 0 chr3 45382111 45382140 -114217643 + AT_rich Low_complexity Low_complexity 1 29 0 5 931 10054 24 4 0 chr3 45382140 45384093 -114215690 + L1Md_Gf LINE L1 1 1142 -5380 5 931 9617 21 0 0 chr3 45387331 45388443 -114211340 + L1Md_T LINE L1 4475 5586 -297 5 931 8957 6 0 0 chr3 45388443 45389439 -114210344 + L1Md_T LINE L1 5587 6582 0 5 931 30 27 0 0 chr3 45389452 45389489 -114210294 + AT_rich Low_complexity Low_complexity 1 37 0 5 931 36806 28 3 7 chr3 45389493 45394899 -114204884 + L1Md_A LINE L1 206 5586 -297 5 931 8409 33 0 0 chr3 45394899 45395893 -114203890 + L1Md_A LINE L1 5587 6580 -2 5 931 4912 143 44 25 chr3 45396128 45396968 -114202815 + Lx2 LINE L1 6134 6989 -8 5 931 355 351 7 50 chr3 45397140 45397281 -114202502 - RSINE1 SINE B4 -4 161 27 5 931 569 331 122 34 chr3 45397802 45398180 -114201603 + MLT1D LTR MaLR 51 461 -44 5 931 853 87 0 0 chr3 45398197 45398312 -114201471 + B1_Mus1 SINE Alu 22 136 -12 5 931 243 0 0 0 chr3 45398313 45398340 -114201443 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 5 931 375 23 0 0 chr3 45399134 45399178 -114200605 + (TG)n Simple_repeat Simple_repeat 2 45 0 5 931 241 384 51 83 chr3 45399237 45399453 -114200330 - B4A SINE B4 -60 232 24 5 931 319 298 63 37 chr3 45400023 45400162 -114199621 - B3A SINE B2 -42 174 36 5 931 1079 121 5 57 chr3 45401738 45401948 -114197835 - L1_Mus2 LINE L1 -1 6565 6367 5 931 250 273 13 59 chr3 45401999 45402068 -114197715 + A-rich Low_complexity Low_complexity 3 67 0 5 931 309 286 94 13 chr3 45402068 45402217 -114197566 + RSINE1 SINE B4 3 163 -2 5 931 250 273 13 59 chr3 45402217 45402299 -114197484 + A-rich Low_complexity Low_complexity 68 147 0 5 931 421 318 183 40 chr3 45402360 45402737 -114197046 - MLT1F1 LTR MaLR -138 431 1 5 931 486 0 0 0 chr3 45402859 45402913 -114196870 + (CA)n Simple_repeat Simple_repeat 2 55 0 5 931 6443 184 42 10 chr3 45402913 45404578 -114195205 - Lx3C LINE L1 -10 6966 5237 5 931 6950 96 1 25 chr3 45404563 45405983 -114193800 - L1_Mus1 LINE L1 -3 6564 4867 5 931 820 152 0 0 chr3 45405964 45406115 -114193668 - L1_Mus1 LINE L1 -4335 1551 1401 5 931 1048 198 57 30 chr3 45406113 45406427 -114193356 - L1_Mus1 LINE L1 -5917 1067 756 5 931 26 50 0 0 chr3 45407760 45407800 -114191983 + AT_rich Low_complexity Low_complexity 1 40 0 5 931 2091 289 152 17 chr3 45408040 45408634 -114191149 - Lx6 LINE L1 -27 7433 6748 5 931 528 16 0 0 chr3 45408634 45408695 -114191088 + (TCTA)n Simple_repeat Simple_repeat 4 64 0 5 931 2091 309 130 16 chr3 45408695 45408977 -114190806 - Lx6 LINE L1 -713 6747 6256 5 931 7205 110 3 21 chr3 45409023 45410878 -114188905 - L1_Mus2 LINE L1 0 6566 4751 5 931 1566 236 6 0 chr3 45410898 45411242 -114188541 + L1_Mur2 LINE L1 5476 5821 -56 5 931 816 319 47 9 chr3 45411235 45411552 -114188231 - Lx6 LINE L1 -1298 6162 5834 5 931 691 224 24 12 chr3 45411550 45411717 -114188066 - Lx6 LINE L1 -267 5610 5442 5 931 423 188 93 16 chr3 45411707 45411836 -114187947 - Lx6 LINE L1 -629 5254 5117 5 931 7444 223 36 22 chr3 45411862 45412313 -114187470 - Lx6 LINE L1 -965 4912 4456 5 931 3708 68 0 0 chr3 45412313 45412787 -114186996 - L1Md_T LINE L1 0 6582 6109 5 931 7444 223 36 22 chr3 45412787 45414385 -114185398 - Lx6 LINE L1 -1422 4455 2835 5 931 569 287 125 19 chr3 45414379 45414577 -114185206 + Lx5 LINE L1 1685 1917 -3963 5 931 495 48 0 0 chr3 45414577 45414639 -114185144 + (TA)n Simple_repeat Simple_repeat 2 63 0 5 931 569 287 125 19 chr3 45414639 45414777 -114185006 + Lx5 LINE L1 1918 2054 -3826 5 931 342 0 0 0 chr3 45414777 45414815 -114184968 + (CA)n Simple_repeat Simple_repeat 2 39 0 5 931 569 287 125 19 chr3 45414815 45414846 -114184937 + Lx5 LINE L1 2055 2091 -3789 5 931 8912 188 35 27 chr3 45414868 45415854 -114183929 + Lx5 LINE L1 3948 4985 -892 5 931 204 40 0 0 chr3 45415854 45415879 -114183904 + (CAAA)n Simple_repeat Simple_repeat 3 27 0 5 931 8912 211 87 16 chr3 45415879 45417808 -114181975 + Lx5 LINE L1 4986 7049 -1 5 931 2799 205 56 15 chr3 45417819 45417942 -114181841 + L1_Mur2 LINE L1 2097 2229 -3648 5 931 378 0 0 0 chr3 45417942 45417984 -114181799 + (TA)n Simple_repeat Simple_repeat 2 43 0 5 931 2799 205 56 15 chr3 45417984 45418534 -114181249 + L1_Mur2 LINE L1 2230 2797 -3080 5 931 574 303 13 66 chr3 45418671 45418897 -114180886 + B3 SINE B2 3 216 0 5 931 403 262 103 0 chr3 45419515 45419622 -114180161 - ID_B1 SINE B4 -3 221 104 5 931 2147 194 52 133 chr3 45419952 45420703 -114179080 - RMER6C LTR ERVK 0 690 1 5 931 1797 151 15 46 chr3 45421220 45421547 -114178236 - ORR1A4 LTR MaLR -8 321 5 5 931 279 0 0 0 chr3 45421567 45421598 -114178185 + (CA)n Simple_repeat Simple_repeat 1 31 0 5 931 542 41 14 0 chr3 45422139 45422212 -114177571 + (CA)n Simple_repeat Simple_repeat 2 75 0 5 931 25 0 0 0 chr3 45422765 45422790 -114176993 + AT_rich Low_complexity Low_complexity 1 25 0 5 931 276 53 0 0 chr3 45423132 45423170 -114176613 + (A)n Simple_repeat Simple_repeat 1 38 0 5 931 21 36 0 0 chr3 45423270 45423298 -114176485 + AT_rich Low_complexity Low_complexity 1 28 0 5 931 495 0 0 0 chr3 45423389 45423444 -114176339 + (TA)n Simple_repeat Simple_repeat 2 56 0 5 931 535 281 38 5 chr3 45423475 45423661 -114176122 - L1MC4 LINE L1 -363 7679 7488 5 931 204 211 35 0 chr3 45423711 45423768 -114176015 + T-rich Low_complexity Low_complexity 2 60 0 5 931 1081 63 0 14 chr3 45423768 45423912 -114175871 - B1_Mus1 SINE Alu 0 148 7 5 931 546 216 39 109 chr3 45423773 45423929 -114175854 - B4 SINE B4 -69 223 79 5 931 309 238 24 8 chr3 45424418 45424545 -114175238 + GA-rich Low_complexity Low_complexity 3 131 0 5 931 181 224 102 17 chr3 45424549 45424608 -114175175 + MIRb SINE MIR 179 242 -26 5 931 517 321 49 6 chr3 45425457 45425620 -114174163 + B4A SINE B4 7 176 -116 5 931 233 203 58 0 chr3 45426497 45426566 -114173217 - L1M4c LINE L1 -5031 1353 1281 5 931 1718 174 59 89 chr3 45426669 45427060 -114172723 - ORR1B1 LTR MaLR 0 394 16 5 931 222 150 0 0 chr3 45427340 45427380 -114172403 + (TTCA)n Simple_repeat Simple_repeat 3 42 0 5 931 420 235 53 90 chr3 45427539 45427895 -114171888 - RCHARR1 DNA MER1_type -28 946 662 5 931 1322 99 6 0 chr3 45427895 45428077 -114171706 + B2_Mm1t SINE B2 1 183 -10 5 931 420 245 41 122 chr3 45428077 45428112 -114171671 - RCHARR1 DNA MER1_type -313 661 640 5 931 1056 221 5 9 chr3 45428112 45428336 -114171447 - URR1B DNA MER1_type -2 223 1 5 931 672 64 0 0 chr3 45428421 45428515 -114171268 + (TC)n Simple_repeat Simple_repeat 2 95 0 5 931 923 235 85 7 chr3 45428724 45428994 -114170789 - Lx9 LINE L1 -489 7155 6865 5 931 1107 309 70 67 chr3 45429093 45429753 -114170030 - RCHARR1 DNA MER1_type -305 669 8 5 931 732 270 54 0 chr3 45430229 45430433 -114169350 - B3 SINE B2 0 216 2 5 931 371 287 27 27 chr3 45431889 45432000 -114167783 - PB1D9 SINE Alu -1 119 9 5 931 288 77 0 0 chr3 45432114 45432153 -114167630 + (TA)n Simple_repeat Simple_repeat 2 40 0 5 931 280 215 0 25 chr3 45432155 45432236 -114167547 + (CAGAGA)n Simple_repeat Simple_repeat 2 80 0 5 931 452 299 27 20 chr3 45433959 45434106 -114165677 - B1_Mur1 SINE Alu 0 149 2 5 931 294 29 0 0 chr3 45434132 45434167 -114165616 + (TG)n Simple_repeat Simple_repeat 1 35 0 5 931 283 276 21 121 chr3 45434182 45434300 -114165483 - B2_Mm1t SINE B2 -67 126 20 5 931 2341 115 39 13 chr3 45434300 45434689 -114165094 + Lx LINE L1 6252 6650 -4 5 931 283 276 21 121 chr3 45434689 45434710 -114165073 - B2_Mm1t SINE B2 -174 19 1 5 931 235 330 65 32 chr3 45435442 45435627 -114164156 + L1MC4 LINE L1 7397 7587 -455 5 931 2417 83 6 0 chr3 45435667 45436004 -114163779 + L1_Mus2 LINE L1 6228 6566 0 5 931 1701 301 308 70 chr3 45436029 45436329 -114163454 + Lx8 LINE L1 6320 6718 -755 6 931 371 20 0 0 chr3 45436329 45436379 -114163404 + L1Md_F3 LINE L1 6521 6570 -14 6 931 1701 303 97 90 chr3 45436379 45437153 -114162630 + Lx8 LINE L1 6719 7471 -2 6 931 729 79 0 0 chr3 45437643 45437744 -114162039 + (GGGAGA)n Simple_repeat Simple_repeat 3 103 0 6 931 1968 137 12 37 chr3 45437959 45438286 -114161497 - ORR1A2 LTR MaLR -8 319 1 6 931 9197 150 43 16 chr3 45438288 45440031 -114159752 - ORR1A2-int LTR MaLR -2 1790 1 6 931 2022 133 8 82 chr3 45440031 45440103 -114159680 - ORR1A2 LTR MaLR 0 327 270 6 931 2261 94 14 20 chr3 45440103 45440450 -114159333 - Lx3_Mus LINE L1 0 7009 6665 6 931 2022 133 8 82 chr3 45440450 45440730 -114159053 - ORR1A2 LTR MaLR -58 269 1 6 931 2652 191 35 16 chr3 45440941 45441505 -114158278 - RMER15 LTR ERVL 0 575 1 6 931 336 83 0 0 chr3 45441595 45441643 -114158140 + (TAA)n Simple_repeat Simple_repeat 1 48 0 6 931 7902 54 4 0 chr3 45441658 45443174 -114156609 - L1Md_F2 LINE L1 0 6582 5059 6 931 2373 96 193 0 chr3 45443411 45443774 -114156009 + RLTR10C LTR ERVK 1 433 -3 6 931 198 0 0 0 chr3 45445202 45445224 -114154559 + (TG)n Simple_repeat Simple_repeat 1 22 0 6 931 488 338 41 86 chr3 45445227 45445470 -114154313 - B4A SINE B4 -56 236 5 6 931 719 189 41 17 chr3 45445722 45445889 -114153894 + MTE2b LTR MaLR 233 405 -14 6 931 30 77 0 0 chr3 45446055 45446120 -114153663 + AT_rich Low_complexity Low_complexity 1 65 0 6 931 34 79 0 0 chr3 45446331 45446407 -114153376 + AT_rich Low_complexity Low_complexity 1 76 0 6 931 2320 63 9 35 chr3 45446551 45446895 -114152888 - L1Md_F2 LINE L1 -1 6581 6247 6 931 2553 71 0 0 chr3 45446895 45447220 -114152563 + L1Md_F2 LINE L1 5922 6246 -336 6 931 1538 214 82 65 chr3 45447223 45447688 -114152095 - Lx2B LINE L1 -4 6996 6524 6 931 345 125 0 0 chr3 45448249 45448305 -114151478 + (TCC)n Simple_repeat Simple_repeat 2 57 0 6 931 233 151 0 19 chr3 45448345 45448399 -114151384 + CT-rich Low_complexity Low_complexity 1 53 0 6 931 1076 287 37 52 chr3 45449177 45449581 -114150202 - MTD LTR MaLR -18 401 4 6 931 288 0 0 0 chr3 45450544 45450576 -114149207 + (CA)n Simple_repeat Simple_repeat 1 32 0 6 931 315 0 0 0 chr3 45450920 45450955 -114148828 + (TG)n Simple_repeat Simple_repeat 2 36 0 6 931 445 43 57 0 chr3 45451467 45451537 -114148246 + (CAAAA)n Simple_repeat Simple_repeat 2 75 0 6 931 247 102 16 48 chr3 45452426 45452488 -114147295 + T-rich Low_complexity Low_complexity 3 62 0 6 931 805 167 27 14 chr3 45452489 45452635 -114147148 - B1_Mur2 SINE Alu -1 148 1 6 931 639 345 34 11 chr3 45453011 45453190 -114146593 + B3A SINE B2 1 183 -15 6 931 297 0 0 0 chr3 45453199 45453232 -114146551 + (CA)n Simple_repeat Simple_repeat 1 33 0 6 931 281 301 26 17 chr3 45455024 45455139 -114144644 - PB1D10 SINE Alu 0 117 2 6 931 414 0 0 0 chr3 45455996 45456042 -114143741 + (TG)n Simple_repeat Simple_repeat 2 47 0 6 931 225 119 0 0 chr3 45456246 45456288 -114143495 + (T)n Simple_repeat Simple_repeat 1 42 0 6 931 10089 14 0 0 chr3 45456290 45458162 -114141621 - L1Md_T LINE L1 0 6582 4711 6 931 492 18 0 0 chr3 45458189 45458246 -114141537 + (TG)n Simple_repeat Simple_repeat 2 58 0 6 931 200 167 20 20 chr3 45458277 45458326 -114141457 + T-rich Low_complexity Low_complexity 4 52 0 6 931 894 150 0 0 chr3 45458464 45458617 -114141166 + CT-rich Low_complexity Low_complexity 3 155 0 6 931 359 304 52 14 chr3 45458836 45459071 -114140712 + L1M2 LINE L1 4775 5016 -1124 6 931 247 196 0 0 chr3 45459222 45459278 -114140505 + A-rich Low_complexity Low_complexity 1 56 0 6 931 270 186 209 0 chr3 45459336 45459422 -114140361 + Lx9 LINE L1 7540 7643 -1 6 931 360 364 0 80 chr3 45460036 45460212 -114139571 + RSINE1 SINE B4 4 165 0 6 931 423 177 0 0 chr3 45460212 45460308 -114139475 + (CA)n Simple_repeat Simple_repeat 1 96 0 6 931 700 360 19 22 chr3 45462901 45463171 -114136612 - B4A SINE B4 -12 280 12 6 931 447 19 0 0 chr3 45463562 45463614 -114136169 + (CA)n Simple_repeat Simple_repeat 2 53 0 6 931 252 268 82 61 chr3 45464694 45464841 -114134942 + MLT1E1 LTR MaLR 125 274 -380 6 931 280 363 16 24 chr3 45464876 45465003 -114134780 - MLT1J LTR MaLR -261 251 126 6 931 3197 86 5 5 chr3 45465203 45465649 -114134134 - L1_Mus2 LINE L1 -1 6565 6120 6 931 2078 205 88 32 chr3 45465649 45465952 -114133831 + RMER6A LTR ERVK 9 355 -365 6 931 630 39 0 0 chr3 45465952 45466029 -114133754 + (GA)n Simple_repeat Simple_repeat 1 77 0 6 931 2078 197 80 34 chr3 45466029 45466345 -114133438 + RMER6A LTR ERVK 332 690 0 6 931 1033 110 7 0 chr3 45466618 45466763 -114133020 + B1_Mus1 SINE Alu 2 147 -1 6 931 255 60 60 0 chr3 45466771 45466821 -114132962 + (CAAA)n Simple_repeat Simple_repeat 2 54 0 6 931 28 29 0 0 chr3 45467453 45467488 -114132295 + AT_rich Low_complexity Low_complexity 1 35 0 6 931 1064 150 6 0 chr3 45467590 45467750 -114132033 + B2_Mm2 SINE B2 1 161 -34 6 931 315 0 0 0 chr3 45467750 45467785 -114131998 + (TAAA)n Simple_repeat Simple_repeat 1 35 0 6 931 1875 79 46 25 chr3 45467928 45468213 -114131570 + L1Md_F2 LINE L1 6292 6582 0 6 931 1077 110 0 0 chr3 45468326 45468472 -114131311 - B1_Mus2 SINE Alu -1 146 1 6 931 712 155 136 0 chr3 45468555 45468710 -114131073 + Lx3B LINE L1 6798 6973 0 6 931 26 50 0 0 chr3 45468710 45468750 -114131033 + AT_rich Low_complexity Low_complexity 1 40 0 6 931 396 0 0 0 chr3 45468769 45468813 -114130970 + (A)n Simple_repeat Simple_repeat 1 44 0 6 931 1125 233 13 88 chr3 45468813 45469615 -114130168 + L1_Mur3 LINE L1 1999 2698 -3179 6 931 180 0 0 0 chr3 45469619 45469639 -114130144 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 6 931 554 204 25 38 chr3 45469712 45469870 -114129913 + L1_Mur3 LINE L1 3026 3181 -2699 6 931 3854 203 102 109 chr3 45469867 45471273 -114128510 + L1_Mur3 LINE L1 3301 4695 -1185 6 931 797 262 58 89 chr3 45471283 45471750 -114128033 - RMER2 LTR ERV1 -18 549 1 6 931 330 169 0 53 chr3 45471750 45471825 -114127958 + L1_Mur3 LINE L1 4690 4760 -1120 6 931 486 49 0 0 chr3 45471892 45471953 -114127830 + (CA)n Simple_repeat Simple_repeat 2 62 0 6 931 528 16 0 0 chr3 45471956 45472017 -114127766 + (GA)n Simple_repeat Simple_repeat 2 62 0 6 931 1846 218 62 17 chr3 45472017 45472436 -114127347 + Lx6 LINE L1 7019 7456 -4 6 931 186 150 0 0 chr3 45472465 45472505 -114127278 + (T)n Simple_repeat Simple_repeat 1 40 0 6 931 1086 50 14 7 chr3 45472523 45472665 -114127118 - B1_Mm SINE Alu -3 144 2 6 931 579 201 2 2 chr3 45472682 45472816 -114126967 + L1_Mur3 LINE L1 5156 5289 -597 6 931 296 314 76 55 chr3 45472857 45473002 -114126781 - RSINE1 SINE B4 -6 159 12 6 931 701 79 0 10 chr3 45473808 45473910 -114125873 + (TTTCC)n Simple_repeat Simple_repeat 3 103 0 6 931 303 28 0 0 chr3 45474884 45474920 -114124863 + (CA)n Simple_repeat Simple_repeat 1 36 0 6 931 1266 191 15 19 chr3 45474922 45475189 -114124594 - Lx9 LINE L1 -482 7162 6897 6 931 743 229 118 4 chr3 45475181 45475426 -114124357 + Lx9 LINE L1 7353 7625 -19 6 931 24 67 0 0 chr3 45475957 45476002 -114123781 + AT_rich Low_complexity Low_complexity 1 45 0 6 931 378 0 0 0 chr3 45476405 45476447 -114123336 + (TC)n Simple_repeat Simple_repeat 1 42 0 6 931 378 0 0 0 chr3 45476447 45476488 -114123295 + (CA)n Simple_repeat Simple_repeat 1 42 0 6 931 409 350 36 18 chr3 45476665 45476831 -114122952 + B4A SINE B4 2 170 -122 6 931 644 273 141 29 chr3 45477715 45478232 -114121551 - L1MA5A LINE L1 -418 5879 5305 6 931 1599 292 40 12 chr3 45478624 45479399 -114120384 + Lx6 LINE L1 6455 7434 -26 6 931 644 74 11 0 chr3 45479400 45479495 -114120288 + (TAGA)n Simple_repeat Simple_repeat 2 97 0 6 931 423 0 0 0 chr3 45479553 45479600 -114120183 + (TCTA)n Simple_repeat Simple_repeat 4 50 0 6 931 186 208 0 0 chr3 45480364 45480412 -114119371 + (TTA)n Simple_repeat Simple_repeat 3 50 0 6 931 769 303 21 42 chr3 45481063 45481346 -114118437 + MTEb LTR MaLR 101 377 -2 6 931 540 81 0 0 chr3 45481467 45481541 -114118242 + (TA)n Simple_repeat Simple_repeat 2 75 0 6 931 233 372 45 45 chr3 45481575 45481730 -114118053 + L2a LINE L2 2969 3123 -303 6 932 261 292 33 11 chr3 45482305 45482395 -114117388 + ORR1D2 LTR MaLR 123 214 -156 6 932 1612 225 204 25 chr3 45482415 45482885 -114116898 - Lx5 LINE L1 0 7050 6497 6 932 3211 205 73 18 chr3 45482876 45483605 -114116178 + Lx4B LINE L1 6055 6823 -235 6 932 233 271 17 0 chr3 45483625 45483684 -114116099 + B3 SINE B2 157 216 0 6 932 606 51 0 0 chr3 45483684 45483762 -114116021 + (TCTA)n Simple_repeat Simple_repeat 1 78 0 6 932 297 75 0 0 chr3 45483988 45484028 -114115755 + (CA)n Simple_repeat Simple_repeat 2 41 0 6 932 309 89 0 0 chr3 45484529 45484574 -114115209 + (TG)n Simple_repeat Simple_repeat 1 45 0 6 932 229 128 0 60 chr3 45484902 45484952 -114114831 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 6 932 734 278 42 19 chr3 45486032 45486292 -114113491 - RMER5 LTR ERV1 -156 378 113 6 932 32 0 0 0 chr3 45486684 45486716 -114113067 + AT_rich Low_complexity Low_complexity 1 32 0 6 932 711 236 60 0 chr3 45486716 45486898 -114112885 - Lx3C LINE L1 -2 6974 6782 6 932 592 230 7 4 chr3 45486895 45487036 -114112747 - Lx3C LINE L1 -798 6260 6117 6 932 1223 206 19 4 chr3 45487049 45487317 -114112466 - L1_Mur2 LINE L1 -4214 1663 1392 6 932 534 278 30 15 chr3 45487317 45487514 -114112269 - L1_Mur2 LINE L1 -6465 621 422 6 932 948 274 121 42 chr3 45487570 45487901 -114111882 - ORR1D1 LTR MaLR -3 371 15 6 932 1281 216 35 95 chr3 45487911 45488259 -114111524 + ORR1C2 LTR MaLR 30 356 -28 6 932 2999 176 37 4 chr3 45488310 45488853 -114110930 - RLTR31_Mm LTR ERVK 0 561 1 6 932 507 308 23 8 chr3 45488955 45489086 -114110697 + RSINE1 SINE B4 4 136 -29 6 932 26 74 0 0 chr3 45490700 45490754 -114109029 + AT_rich Low_complexity Low_complexity 1 54 0 6 932 498 345 41 8 chr3 45491800 45492066 -114107717 - B4A SINE B4 -16 276 2 6 932 428 292 39 58 chr3 45492315 45492471 -114107312 + B4A SINE B4 1 153 -139 6 932 378 279 90 83 chr3 45493158 45493291 -114106492 + B4A SINE B4 159 292 0 6 932 226 333 71 48 chr3 45493504 45493520 -114106263 + LTR81B LTR ERV1? 203 287 -1106 6 932 356 308 29 0 chr3 45493520 45493624 -114106159 + MamGypLTR2c LTR Gypsy 1 107 -961 7 932 1295 67 0 11 chr3 45493975 45494155 -114105628 + (TTTTC)n Simple_repeat Simple_repeat 2 179 0 7 932 305 341 0 0 chr3 45494698 45494824 -114104959 + (CCA)n Simple_repeat Simple_repeat 1 126 0 7 932 21 0 0 0 chr3 45494992 45495013 -114104770 + AT_rich Low_complexity Low_complexity 1 21 0 7 932 378 94 172 0 chr3 45495032 45495096 -114104687 - Lx3A LINE L1 -151 6830 6756 7 932 403 193 0 18 chr3 45495096 45495207 -114104576 + Lx3A LINE L1 6857 6965 -16 7 932 363 78 0 0 chr3 45495209 45495260 -114104523 + (TAAA)n Simple_repeat Simple_repeat 1 51 0 7 932 303 26 0 0 chr3 45497384 45497422 -114102361 - tRNA-Gln-CAG tRNA tRNA -37 38 1 7 932 518 346 42 8 chr3 45497603 45497868 -114101915 - B4A SINE B4 -18 274 1 7 932 24 32 0 0 chr3 45498407 45498438 -114101345 + AT_rich Low_complexity Low_complexity 1 31 0 7 932 195 365 12 12 chr3 45498614 45498700 -114101083 + MIR SINE MIR 26 111 -97 7 932 254 29 29 0 chr3 45498726 45498761 -114101022 + (TTTC)n Simple_repeat Simple_repeat 3 38 0 7 932 263 306 83 0 chr3 45498857 45498929 -114100854 - MIRb SINE MIR -147 121 44 7 932 492 362 19 28 chr3 45499074 45499290 -114100493 - B3 SINE B2 0 216 3 7 932 566 220 34 41 chr3 45499853 45500000 -114099783 - MTD LTR MaLR -3 416 271 7 932 772 222 20 56 chr3 45500000 45500196 -114099587 - MTC LTR MaLR -151 270 82 1 932 297 179 36 0 chr3 45500329 45500413 -114099370 + CT-rich Low_complexity Low_complexity 2 88 0 2 932 878 252 59 88 chr3 45500642 45500982 -114098801 - MER67D LTR ERV1 -183 331 2 3 932 35 24 0 0 chr3 45503570 45503612 -114096171 + AT_rich Low_complexity Low_complexity 1 42 0 4 932 1925 285 90 73 chr3 45503678 45503997 -114095786 - L1_Mus4 LINE L1 -210 6763 6435 5 932 763 202 27 11 chr3 45503997 45504182 -114095601 + Lx3B LINE L1 6783 6970 -3 6 932 2132 189 44 39 chr3 45504182 45505080 -114094703 - L1_Mus4 LINE L1 -539 6434 5526 5 932 2575 87 8 3 chr3 45505097 45505454 -114094329 + L1_Mus4 LINE L1 5862 6220 -416 7 932 21 0 0 0 chr3 45505829 45505850 -114093933 + AT_rich Low_complexity Low_complexity 1 21 0 8 932 307 323 52 10 chr3 45506213 45506310 -114093473 + B4A SINE B4 172 272 -20 9 932 1132 76 0 0 chr3 45507783 45507928 -114091855 + B1_Mus1 SINE Alu 2 146 -2 1 932 240 23 21 64 chr3 45507928 45507975 -114091808 + (TAAA)n Simple_repeat Simple_repeat 2 46 0 1 932 452 287 41 72 chr3 45509211 45509245 -114090538 - B3A SINE B2 0 198 168 1 932 462 79 0 0 chr3 45509245 45509308 -114090475 + (TG)n Simple_repeat Simple_repeat 2 64 0 1 932 452 287 41 72 chr3 45509308 45509468 -114090315 - B3A SINE B2 -31 167 10 1 932 227 173 39 0 chr3 45509648 45509700 -114090083 + (CAGA)n Simple_repeat Simple_repeat 1 54 0 1 932 1107 284 24 74 chr3 45509710 45510426 -114089357 - RMER19B LTR ERVK -13 889 4 1 932 811 203 43 82 chr3 45511156 45511278 -114088505 - URR1B DNA MER1_type -3 222 99 1 932 423 0 0 0 chr3 45511278 45511325 -114088458 + (TCTA)n Simple_repeat Simple_repeat 4 50 0 1 932 811 203 43 82 chr3 45511325 45511433 -114088350 - URR1B DNA MER1_type -127 98 1 1 932 221 183 0 48 chr3 45511758 45511821 -114087962 + A-rich Low_complexity Low_complexity 5 64 0 1 932 199 214 0 67 chr3 45512883 45512928 -114086855 + MIRb SINE MIR 124 165 -103 1 932 330 264 127 58 chr3 45514161 45514334 -114085449 + RMER15 LTR ERVL 3 187 -388 2 932 460 310 96 40 chr3 45514321 45514570 -114085213 + RMER15 LTR ERVL 299 561 -14 2 932 24 0 0 0 chr3 45516498 45516522 -114083261 + AT_rich Low_complexity Low_complexity 1 24 0 2 932 183 129 0 0 chr3 45517433 45517464 -114082319 + (TG)n Simple_repeat Simple_repeat 1 31 0 2 932 256 127 0 35 chr3 45517527 45517584 -114082199 + (TATG)n Simple_repeat Simple_repeat 4 58 0 2 932 386 367 0 8 chr3 45517592 45517713 -114082070 - B3A SINE B2 -24 174 55 2 932 847 288 19 24 chr3 45518430 45518640 -114081143 - B3 SINE B2 0 216 8 2 932 1154 164 54 31 chr3 45518671 45518929 -114080854 - L1_Mus4 LINE L1 -1 6635 6372 2 932 250 59 0 0 chr3 45518929 45518963 -114080820 - L1_Mus4 LINE L1 -356 6280 6247 2 932 564 193 0 0 chr3 45519002 45519116 -114080667 + CT-rich Low_complexity Low_complexity 4 117 0 2 932 8412 31 1 0 chr3 45519187 45520247 -114079536 - L1Md_T LINE L1 -1 6581 5521 2 932 6948 73 32 2 chr3 45520237 45521209 -114078574 - L1_Mus1 LINE L1 -36 6531 5533 2 932 1063 148 0 0 chr3 45521431 45521607 -114078176 + Lx2 LINE L1 6822 6997 0 3 932 217 211 0 0 chr3 45521730 45521768 -114078015 + polypyrimidine Low_complexity Low_complexity 1 38 0 3 932 438 20 0 0 chr3 45521768 45521819 -114077964 + (CAT)n Simple_repeat Simple_repeat 3 53 0 3 932 428 312 54 39 chr3 45521827 45521957 -114077826 - B1_Mur1 SINE Alu -17 132 1 3 932 621 188 7 34 chr3 45522113 45522262 -114077521 - Lx3C LINE L1 -2 6974 6830 3 932 1935 138 9 16 chr3 45522280 45522603 -114077180 + ORR1A4 LTR MaLR 1 321 -8 3 932 357 308 39 0 chr3 45522748 45522852 -114076931 + RSINE1 SINE B4 44 151 -14 3 932 543 108 29 0 chr3 45522874 45522976 -114076807 + (CA)n Simple_repeat Simple_repeat 2 106 0 3 932 1351 258 14 11 chr3 45523883 45524247 -114075536 + Lx7 LINE L1 6105 6469 -1227 3 932 1641 276 62 31 chr3 45524324 45524807 -114074976 + Lx6 LINE L1 6794 7291 -169 3 932 1491 233 25 8 chr3 45524826 45525181 -114074602 - RMER1C Other Other -1 1341 981 4 932 249 280 20 20 chr3 45525190 45525292 -114074491 + Lx6 LINE L1 7356 7457 -3 3 932 3239 71 40 0 chr3 45525633 45526058 -114073725 + L1_Mus2 LINE L1 6124 6565 -1 4 932 924 217 13 35 chr3 45526252 45526481 -114073302 + MTD LTR MaLR 194 417 -2 4 932 392 0 21 0 chr3 45526853 45526901 -114072882 + (CA)n Simple_repeat Simple_repeat 2 50 0 4 932 895 277 123 12 chr3 45527087 45527420 -114072363 - ORR1D2 LTR MaLR 0 370 1 4 932 384 307 170 79 chr3 45527848 45528113 -114071670 - B4A SINE B4 -1 291 3 4 932 456 282 31 93 chr3 45528133 45528146 -114071637 - CYRA11_Mm Unknown Y-chromosome -219 398 354 4 932 1247 175 9 26 chr3 45528146 45528187 -114071596 + URR1B DNA MER1_type 1 40 -185 4 932 3424 23 5 0 chr3 45528187 45528581 -114071202 + MTA_Mm LTR MaLR 1 396 0 4 932 1247 175 9 26 chr3 45528581 45528768 -114071015 + URR1B DNA MER1_type 41 225 0 4 932 456 282 31 93 chr3 45528768 45528784 -114070999 - CYRA11_Mm Unknown Y-chromosome -264 353 157 4 932 333 327 17 50 chr3 45529929 45530048 -114069735 + LTR83 LTR ERVL 23 137 -643 5 932 216 322 64 75 chr3 45530410 45530504 -114069279 + B4A SINE B4 88 180 -112 5 932 285 319 0 42 chr3 45530429 45530524 -114069259 + PB1D10 SINE Alu 19 109 -8 5 932 1787 147 11 7 chr3 45530554 45530841 -114068942 + Lx3A LINE L1 6653 6940 -41 5 932 972 223 15 0 chr3 45531297 45531503 -114068280 + B3 SINE B2 1 209 -7 5 932 23 0 0 0 chr3 45531503 45531526 -114068257 + AT_rich Low_complexity Low_complexity 1 23 0 5 932 30 27 0 0 chr3 45531612 45531649 -114068134 + AT_rich Low_complexity Low_complexity 1 37 0 5 932 297 151 0 0 chr3 45531653 45531706 -114068077 + (TA)n Simple_repeat Simple_repeat 2 54 0 5 932 477 328 95 55 chr3 45531747 45531947 -114067836 - B4 SINE B4 -1 291 84 5 932 288 0 0 0 chr3 45531965 45531997 -114067786 + (TA)n Simple_repeat Simple_repeat 2 33 0 5 932 285 311 14 0 chr3 45532118 45532192 -114067591 - B4 SINE B4 -212 80 6 5 932 21 36 0 0 chr3 45532207 45532235 -114067548 + AT_rich Low_complexity Low_complexity 1 28 0 6 932 22 35 0 0 chr3 45533375 45533404 -114066379 + AT_rich Low_complexity Low_complexity 1 29 0 6 932 1104 133 0 0 chr3 45534219 45534399 -114065384 + (TC)n Simple_repeat Simple_repeat 1 180 0 6 932 6894 148 40 18 chr3 45534699 45535957 -114063826 + Lx2 LINE L1 5710 6995 -2 6 932 181 345 0 0 chr3 45536345 45536400 -114063383 + L2c LINE L2 3328 3382 -5 6 932 21 36 0 0 chr3 45537890 45537918 -114061865 + AT_rich Low_complexity Low_complexity 1 28 0 6 932 433 348 44 15 chr3 45538538 45538742 -114061041 - ID_B1 SINE B4 -6 218 9 6 932 1905 244 46 21 chr3 45539347 45539821 -114059962 - Lx6 LINE L1 -180 7280 6795 6 932 2849 261 88 3 chr3 45539819 45540420 -114059363 - Lx7 LINE L1 -1177 6519 5872 6 932 306 0 0 0 chr3 45540420 45540454 -114059329 + (TA)n Simple_repeat Simple_repeat 2 35 0 6 932 4365 182 48 67 chr3 45540454 45541117 -114058666 - Lx7 LINE L1 -1825 5871 5230 6 932 384 77 0 0 chr3 45541117 45541169 -114058614 + (TG)n Simple_repeat Simple_repeat 1 52 0 7 932 2758 47 68 5 chr3 45541169 45541537 -114058246 + MTA_Mm LTR MaLR 5 395 -1 7 932 341 84 56 0 chr3 45541537 45541608 -114058175 + (TA)n Simple_repeat Simple_repeat 2 76 0 7 932 4365 182 48 68 chr3 45541608 45542037 -114057746 - Lx7 LINE L1 -651 5229 4799 6 932 1287 275 29 23 chr3 45542403 45542749 -114057034 - ORR1D2 LTR MaLR -2 368 21 7 932 548 241 84 39 chr3 45542765 45542968 -114056815 - ORR1D2-int LTR MaLR 0 1370 1159 7 932 233 29 29 0 chr3 45543550 45543584 -114056199 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 7 932 25594 88 9 1 chr3 45543588 45547175 -114052608 + L1Md_F2 LINE L1 1969 5585 -298 7 932 7154 79 8 15 chr3 45547177 45548176 -114051607 + L1Md_F2 LINE L1 5588 6579 -3 7 932 189 0 0 0 chr3 45548203 45548224 -114051559 + (CAA)n Simple_repeat Simple_repeat 1 21 0 7 932 420 335 30 60 chr3 45549573 45549773 -114050010 - B3A SINE B2 0 198 5 7 932 22 56 0 0 chr3 45549887 45549923 -114049860 + AT_rich Low_complexity Low_complexity 1 36 0 7 932 291 281 16 0 chr3 45550110 45550174 -114049609 + ID SINE ID 1 65 -159 7 932 1163 294 74 8 chr3 45550361 45550738 -114049045 - MTD LTR MaLR 0 419 18 8 932 719 289 12 146 chr3 45551343 45551679 -114048104 - B4 SINE B4 0 292 2 8 932 298 306 4 25 chr3 45552490 45552584 -114047199 - RLTR20D LTR ERVK -16 562 460 8 932 519 17 0 0 chr3 45552586 45552646 -114047137 + (CA)n Simple_repeat Simple_repeat 1 60 0 8 932 313 225 52 17 chr3 45552703 45552875 -114046908 + (TATAA)n Simple_repeat Simple_repeat 2 179 0 8 932 1264 111 0 10 chr3 45552959 45553159 -114046624 - L1Md_F2 LINE L1 -1 6581 6384 8 932 3715 118 4 4 chr3 45553165 45553710 -114046073 - L1_Mus4 LINE L1 -13 6623 6079 8 932 2660 73 0 0 chr3 45553710 45554065 -114045718 + L1_Mus4 LINE L1 5727 6081 -555 8 932 1958 219 48 26 chr3 45554066 45554525 -114045258 - RLTR20D LTR ERVK -99 469 1 8 932 22 0 0 0 chr3 45555918 45555940 -114043843 + AT_rich Low_complexity Low_complexity 1 22 0 8 932 21 36 0 0 chr3 45557650 45557678 -114042105 + AT_rich Low_complexity Low_complexity 1 28 0 8 932 565 97 19 0 chr3 45559138 45559241 -114040542 + (TCTA)n Simple_repeat Simple_repeat 1 105 0 8 932 33 0 0 0 chr3 45559914 45559947 -114039836 + AT_rich Low_complexity Low_complexity 1 33 0 9 932 278 284 65 47 chr3 45560068 45560175 -114039608 - B1F1 SINE Alu -1 116 8 9 932 1425 208 3 106 chr3 45560706 45561035 -114038748 - MT2A LTR ERVL -236 297 3 9 932 307 272 66 88 chr3 45561041 45561178 -114038605 + B3A SINE B2 63 196 -2 9 932 373 384 12 6 chr3 45561326 45561486 -114038297 - RSINE1 SINE B4 0 165 5 9 932 606 14 0 0 chr3 45561561 45561632 -114038151 + (TA)n Simple_repeat Simple_repeat 1 71 0 9 932 180 0 0 0 chr3 45561855 45561875 -114037908 + (A)n Simple_repeat Simple_repeat 1 20 0 9 932 428 163 12 0 chr3 45562231 45562317 -114037466 + (TA)n Simple_repeat Simple_repeat 1 87 0 9 932 274 312 137 55 chr3 45562965 45563148 -114036635 - B3A SINE B2 0 198 1 9 932 356 312 173 17 chr3 45563364 45563537 -114036246 + B4 SINE B4 10 209 -83 9 932 2354 115 0 69 chr3 45563540 45563933 -114035850 - L1_Mus2 LINE L1 0 6566 6201 1 932 24 32 0 0 chr3 45565030 45565061 -114034722 + AT_rich Low_complexity Low_complexity 1 31 0 1 932 25 0 0 0 chr3 45566614 45566639 -114033144 + AT_rich Low_complexity Low_complexity 1 25 0 1 932 511 147 129 0 chr3 45566644 45566760 -114033023 - Lx3_Mus LINE L1 -2 7007 6877 1 932 197 65 32 0 chr3 45567188 45567219 -114032564 + (TG)n Simple_repeat Simple_repeat 2 33 0 1 932 309 279 0 37 chr3 45567863 45567971 -114031812 + (CATATA)n Simple_repeat Simple_repeat 3 106 0 1 932 379 284 44 92 chr3 45568005 45568234 -114031549 - RMER12 LTR ERVK -334 988 771 1 932 417 168 16 60 chr3 45568244 45568428 -114031355 + (CATATA)n Simple_repeat Simple_repeat 2 177 0 1 932 617 38 12 0 chr3 45568869 45568949 -114030834 + (TTTTG)n Simple_repeat Simple_repeat 2 82 0 1 932 1147 299 3 3 chr3 45569063 45569365 -114030418 + Lx6 LINE L1 6990 7291 -169 1 932 229 269 76 13 chr3 45569672 45569751 -114030032 + Lx8 LINE L1 7358 7441 -32 1 932 448 366 10 0 chr3 45569961 45570155 -114029628 - MLT1D LTR MaLR -8 497 302 1 932 393 117 0 0 chr3 45570405 45570465 -114029318 + (TGG)n Simple_repeat Simple_repeat 1 60 0 1 932 939 61 0 0 chr3 45570945 45571076 -114028707 + (CA)n Simple_repeat Simple_repeat 2 132 0 1 932 324 0 0 0 chr3 45571076 45571111 -114028672 + (TA)n Simple_repeat Simple_repeat 2 37 0 1 932 180 0 0 0 chr3 45571426 45571446 -114028337 + (TG)n Simple_repeat Simple_repeat 2 21 0 1 932 214 284 19 10 chr3 45571756 45571859 -114027924 + (TA)n Simple_repeat Simple_repeat 2 105 0 1 932 456 327 12 23 chr3 45572043 45572215 -114027568 + B3A SINE B2 25 194 -4 1 932 617 168 7 0 chr3 45572330 45572485 -114027298 + (TG)n Simple_repeat Simple_repeat 1 156 0 1 932 25 0 0 0 chr3 45573730 45573755 -114026028 + AT_rich Low_complexity Low_complexity 1 25 0 1 932 222 222 132 24 chr3 45573848 45573931 -114025852 - B1_Mur2 SINE Alu -1 148 57 1 932 464 263 189 0 chr3 45574021 45574196 -114025587 + B3 SINE B2 2 209 -7 1 932 444 302 26 26 chr3 45575243 45575396 -114024387 + RSINE1 SINE B4 1 153 -12 1 932 404 19 19 0 chr3 45575403 45575456 -114024327 + (CA)n Simple_repeat Simple_repeat 2 55 0 1 932 410 244 6 0 chr3 45576034 45576190 -114023593 + (TG)n Simple_repeat Simple_repeat 2 158 0 1 932 423 301 46 63 chr3 45576243 45576417 -114023366 - B4A SINE B4 -44 248 78 1 932 341 22 0 21 chr3 45576576 45576623 -114023160 + (TTTTG)n Simple_repeat Simple_repeat 2 47 0 1 932 315 194 65 29 chr3 45576968 45577138 -114022645 + (TAGA)n Simple_repeat Simple_repeat 4 179 0 1 932 704 45 36 0 chr3 45577847 45577957 -114021826 + L1Md_F3 LINE L1 6470 6583 -1 1 932 270 73 0 0 chr3 45578014 45578055 -114021728 + (CAA)n Simple_repeat Simple_repeat 2 42 0 1 932 200 121 30 0 chr3 45578134 45578167 -114021616 + A-rich Low_complexity Low_complexity 2 35 0 1 932 531 0 0 0 chr3 45578179 45578238 -114021545 + (TA)n Simple_repeat Simple_repeat 1 59 0 1 932 7141 142 52 5 chr3 45580173 45581514 -114018269 - L1_Mur2 LINE L1 -1140 4737 3334 1 932 2659 110 0 8 chr3 45581519 45581913 -114017870 - Lx3_Mus LINE L1 -525 6484 6094 1 932 997 95 12 6 chr3 45581912 45582082 -114017701 - L1_Mur2 LINE L1 -3830 2047 1877 1 932 559 296 230 58 chr3 45582082 45582477 -114017306 + RLTR16 LTR ERVK 1 463 -42 1 932 4330 159 47 17 chr3 45582706 45584109 -114015674 - L1_Mur2 LINE L1 -3996 1881 426 1 932 1908 77 0 0 chr3 45584657 45584905 -114014878 - L1_Mus1 LINE L1 -1 6566 6319 1 932 2097 140 16 0 chr3 45585170 45585492 -114014291 + ORR1A2 LTR MaLR 1 327 0 1 932 1921 116 6 56 chr3 45585518 45585857 -114013926 - RLTRETN_Mm LTR ERVK 0 322 1 1 932 228 86 0 0 chr3 45586341 45586376 -114013407 + (TTG)n Simple_repeat Simple_repeat 2 36 0 1 932 893 249 13 18 chr3 45587002 45587227 -114012556 + URR1B DNA MER1_type 1 224 -1 1 932 319 379 67 13 chr3 45587669 45587907 -114011876 - Charlie24 DNA MER1_type -1501 949 699 1 932 376 220 171 18 chr3 45587996 45588107 -114011676 - B1_Mur4 SINE Alu -21 128 1 1 932 227 247 18 118 chr3 45588018 45588128 -114011655 - MT2B LTR ERVL -354 247 149 1 932 1002 122 0 0 chr3 45588423 45588571 -114011212 + B1_Mus1 SINE Alu 1 148 0 1 932 321 247 11 33 chr3 45588571 45588663 -114011120 + RMER20B LTR ERVK 128 217 -410 1 932 5299 127 10 34 chr3 45588667 45589960 -114009823 + L1Md_F LINE L1 360 1648 -4235 1 932 9379 79 21 11 chr3 45589937 45590221 -114009562 + L1Md_F LINE L1 4317 4599 -1284 1 932 2332 8 0 0 chr3 45590221 45590483 -114009300 + L1Md_A LINE L1 6321 6582 0 1 932 9379 79 21 11 chr3 45590483 45591496 -114008287 + L1Md_F LINE L1 4600 5627 -256 1 932 1774 184 13 0 chr3 45591535 45591839 -114007944 + ORR1A2 LTR MaLR 12 319 -8 1 932 366 173 0 0 chr3 45591885 45591960 -114007823 + (CA)n Simple_repeat Simple_repeat 2 76 0 1 932 183 186 194 75 chr3 45592352 45592445 -114007338 + MIRb SINE MIR 26 129 -139 1 932 1878 124 0 0 chr3 45592511 45592786 -114006997 + Lx3_Mus LINE L1 6096 6370 -639 1 932 3064 136 0 4 chr3 45592786 45593265 -114006518 + L1_Mus4 LINE L1 6160 6636 0 1 932 4027 116 10 7 chr3 45593271 45593888 -114005895 + Lx3_Mus LINE L1 6391 7009 0 1 932 23 0 0 0 chr3 45594007 45594030 -114005753 + AT_rich Low_complexity Low_complexity 1 23 0 1 932 385 293 73 0 chr3 45595312 45595435 -114004348 + ORR1E LTR MaLR 9 140 -219 1 932 219 45 0 83 chr3 45595606 45595654 -114004129 + (TTTTTG)n Simple_repeat Simple_repeat 4 47 0 1 932 301 336 24 16 chr3 45595711 45595835 -114003948 + Lx7 LINE L1 6603 6727 -969 1 932 288 0 0 0 chr3 45595839 45595871 -114003912 + (CAAA)n Simple_repeat Simple_repeat 3 34 0 1 932 5716 44 3 4 chr3 45595907 45596614 -114003169 - L1Md_F2 LINE L1 0 6582 5877 1 932 1674 76 0 0 chr3 45596614 45596837 -114002946 + L1_Mm LINE L1 4062 4284 -1599 1 932 1320 257 193 21 chr3 45596812 45597341 -114002442 + Lx6 LINE L1 6750 7369 -91 1 932 416 67 17 0 chr3 45597350 45597410 -114002373 + (TC)n Simple_repeat Simple_repeat 2 62 0 1 932 312 27 0 0 chr3 45597411 45597448 -114002335 + (TA)n Simple_repeat Simple_repeat 2 38 0 1 932 255 146 0 0 chr3 45597620 45597675 -114002108 + (GA)n Simple_repeat Simple_repeat 2 56 0 1 932 1550 240 54 134 chr3 45597704 45598374 -114001409 - Lx7 LINE L1 0 7696 7081 1 932 581 258 86 0 chr3 45598368 45598496 -114001287 - Lx7 LINE L1 -945 6751 6613 1 932 275 253 82 42 chr3 45598766 45598920 -114000863 - MLT2C2 LTR ERVL -296 168 1 1 932 811 322 64 47 chr3 45599695 45600037 -113999746 + ORR1E LTR MaLR 3 350 -9 1 932 279 122 0 0 chr3 45600663 45600712 -113999071 + (TG)n Simple_repeat Simple_repeat 1 49 0 1 932 1544 114 16 20 chr3 45600921 45601102 -113998681 - L1_Mm LINE L1 -346 5537 5362 1 932 376 18 0 51 chr3 45601102 45601161 -113998622 + (TTTG)n Simple_repeat Simple_repeat 2 57 0 1 932 1544 137 21 26 chr3 45601161 45601266 -113998517 - L1_Mm LINE L1 -522 5361 5247 1 932 297 0 0 0 chr3 45601266 45601299 -113998484 + (TG)n Simple_repeat Simple_repeat 2 34 0 1 932 6893 102 31 11 chr3 45601325 45601384 -113998399 - L1_Mus3 LINE L1 -3 6635 6571 1 932 206 32 0 31 chr3 45601384 45601416 -113998367 + (CAAA)n Simple_repeat Simple_repeat 1 31 0 1 932 6893 116 53 9 chr3 45601416 45602660 -113997123 - L1_Mus3 LINE L1 -68 6570 5311 1 932 216 0 0 0 chr3 45602660 45602684 -113997099 + (TA)n Simple_repeat Simple_repeat 1 24 0 1 932 3968 164 130 1 chr3 45602684 45602893 -113996890 - L1_Mus3 LINE L1 -573 5310 5026 1 932 1826 105 52 3 chr3 45602893 45603180 -113996603 + L1_Mus4 LINE L1 6318 6618 -18 1 932 711 276 20 0 chr3 45603804 45604007 -113995776 - B3 SINE B2 -9 207 1 1 932 573 15 0 0 chr3 45604201 45604267 -113995516 + (TG)n Simple_repeat Simple_repeat 1 66 0 1 932 281 329 93 7 chr3 45604271 45604421 -113995362 - B3 SINE B2 -53 163 1 1 932 395 132 29 0 chr3 45604796 45604864 -113994919 - ORR1A2 LTR MaLR 0 326 257 1 932 7326 98 3 0 chr3 45604885 45606364 -113993419 - L1_Mus1 LINE L1 -1 6566 5084 1 932 1608 185 7 7 chr3 45606364 45606652 -113993131 - ORR1A2 LTR MaLR -39 288 1 1 932 49 71 0 0 chr3 45606776 45606874 -113992909 + AT_rich Low_complexity Low_complexity 1 98 0 1 932 249 343 54 54 chr3 45607655 45607766 -113992017 - B3A SINE B2 0 198 88 1 932 38 22 0 0 chr3 45607805 45607850 -113991933 + AT_rich Low_complexity Low_complexity 1 45 0 1 932 331 47 0 44 chr3 45607948 45607993 -113991790 - HAL1-3A_ME LINE L1 -839 2019 1977 1 932 276 282 0 0 chr3 45608023 45608140 -113991643 + (TG)n Simple_repeat Simple_repeat 1 117 0 1 932 233 182 29 57 chr3 45608141 45608211 -113991572 - Lx9 LINE L1 -196 7448 7381 1 932 290 341 115 8 chr3 45608497 45608627 -113991156 + ID_B1 SINE B4 81 224 0 1 932 2218 216 56 14 chr3 45608755 45609239 -113990544 - RLTR11A LTR ERVK -24 504 1 1 932 22 0 0 0 chr3 45609247 45609269 -113990514 + AT_rich Low_complexity Low_complexity 1 22 0 1 932 710 312 148 41 chr3 45609513 45609974 -113989809 + MER34A1 LTR ERV1 16 525 -62 1 932 24 0 0 0 chr3 45610805 45610829 -113988954 + AT_rich Low_complexity Low_complexity 1 24 0 1 932 350 323 10 0 chr3 45611879 45611978 -113987805 - Lx8 LINE L1 -238 7235 7136 1 932 33 56 0 0 chr3 45612571 45612625 -113987158 + AT_rich Low_complexity Low_complexity 1 54 0 1 933 287 367 84 37 chr3 45615814 45616029 -113983754 - MER47B DNA MER2_type -159 259 35 1 933 22 0 0 0 chr3 45616194 45616216 -113983567 + AT_rich Low_complexity Low_complexity 1 22 0 1 933 3549 182 40 4 chr3 45616223 45616958 -113982825 - L1_Mur1 LINE L1 -3103 2783 2023 1 933 5674 190 57 5 chr3 45616957 45618107 -113981676 + Lx3C LINE L1 5757 6965 -11 1 933 21 0 0 0 chr3 45618191 45618212 -113981571 + AT_rich Low_complexity Low_complexity 1 21 0 1 933 21 57 0 0 chr3 45618482 45618517 -113981266 + AT_rich Low_complexity Low_complexity 1 35 0 1 933 267 355 9 52 chr3 45618583 45618699 -113981084 + RSINE1 SINE B4 11 121 -44 1 933 256 364 40 70 chr3 45618748 45618949 -113980834 - Lx8 LINE L1 -268 7205 7011 2 933 649 245 66 10 chr3 45619861 45620059 -113979724 + Lx9 LINE L1 7294 7502 -142 2 933 342 0 0 0 chr3 45620071 45620109 -113979674 + (CA)n Simple_repeat Simple_repeat 2 39 0 2 933 639 201 24 0 chr3 45620109 45620273 -113979510 + Lx9 LINE L1 7477 7644 0 2 933 267 31 0 0 chr3 45620291 45620323 -113979460 + (TA)n Simple_repeat Simple_repeat 2 33 0 2 933 675 301 65 4 chr3 45620409 45620656 -113979127 + Lx9 LINE L1 7207 7468 -176 2 933 354 157 36 42 chr3 45620878 45621044 -113978739 + (TTATA)n Simple_repeat Simple_repeat 5 169 0 2 933 1736 298 58 4 chr3 45621125 45621611 -113978172 - RLTR18B LTR ERVK 0 512 1 2 933 741 220 12 19 chr3 45621661 45621823 -113977960 + U1 snRNA snRNA 5 165 0 2 933 652 353 64 77 chr3 45621887 45622433 -113977350 - Tigger7 DNA MER2_type -1880 611 73 2 933 254 361 14 0 chr3 45622873 45622945 -113976838 - ID SINE ID -151 73 1 2 933 917 254 20 0 chr3 45623365 45623562 -113976221 - B3 SINE B2 -10 206 6 2 933 24 32 0 0 chr3 45624027 45624058 -113975725 + AT_rich Low_complexity Low_complexity 1 31 0 2 933 385 178 0 17 chr3 45624069 45624189 -113975594 + CT-rich Low_complexity Low_complexity 1 118 0 2 933 276 30 0 0 chr3 45624191 45624224 -113975559 + (CA)n Simple_repeat Simple_repeat 2 34 0 2 933 279 0 0 0 chr3 45624224 45624254 -113975529 + (GA)n Simple_repeat Simple_repeat 2 32 0 2 933 345 324 18 44 chr3 45624831 45624944 -113974839 + B4A SINE B4 128 237 -55 2 933 227 260 0 0 chr3 45624944 45624994 -113974789 - L1_Rod LINE L1 -650 5197 5148 2 933 420 20 0 0 chr3 45624995 45625044 -113974739 + (TG)n Simple_repeat Simple_repeat 2 50 0 2 933 24 32 0 0 chr3 45625221 45625252 -113974531 + AT_rich Low_complexity Low_complexity 1 31 0 2 933 180 221 56 42 chr3 45626289 45626360 -113973423 + L3 LINE CR1 1899 1970 -2519 2 933 218 200 0 0 chr3 45627412 45627452 -113972331 + (CAAA)n Simple_repeat Simple_repeat 1 40 0 2 933 339 25 0 0 chr3 45627849 45627889 -113971894 + (TC)n Simple_repeat Simple_repeat 2 41 0 2 933 374 291 61 36 chr3 45628305 45628501 -113971282 + B3 SINE B2 1 201 -15 2 933 21 36 0 0 chr3 45628512 45628540 -113971243 + AT_rich Low_complexity Low_complexity 1 28 0 2 933 1106 76 7 0 chr3 45629177 45629322 -113970461 + B1_Mm SINE Alu 1 146 -1 2 933 7153 133 36 7 chr3 45629329 45630524 -113969259 + Lx3C LINE L1 5737 6966 -10 2 933 434 65 16 0 chr3 45630545 45630607 -113969176 + (TA)n Simple_repeat Simple_repeat 2 64 0 2 933 536 142 8 40 chr3 45630610 45630735 -113969048 + L1_Mur3 LINE L1 3020 3140 -2740 2 933 426 99 12 12 chr3 45630735 45630817 -113968966 + L1_Mus4 LINE L1 6548 6629 -7 2 933 900 252 109 132 chr3 45630953 45631401 -113968382 + RMER15 LTR ERVL 65 502 -73 2 933 507 17 0 0 chr3 45632636 45632696 -113967087 + (CA)n Simple_repeat Simple_repeat 1 60 0 2 933 1818 70 4 0 chr3 45633766 45634007 -113965776 - L1_Mus3 LINE L1 -726 5912 5671 2 933 5627 23 0 0 chr3 45634002 45634816 -113964967 - L1Md_A LINE L1 -536 6046 5233 2 933 4428 34 0 0 chr3 45634816 45635340 -113964443 + L1Md_T LINE L1 6058 6581 -1 2 933 837 174 0 0 chr3 45635340 45635478 -113964305 - L1_Mus3 LINE L1 -199 5684 5547 2 933 5009 98 27 0 chr3 45635478 45636191 -113963592 + L1_Mus3 LINE L1 5901 6632 -6 2 933 237 238 0 0 chr3 45637210 45637273 -113962510 + T-rich Low_complexity Low_complexity 1 63 0 2 933 861 313 116 22 chr3 45637828 45638361 -113961422 + MTD-int LTR MaLR 676 1258 0 2 933 597 339 38 30 chr3 45638363 45638770 -113961013 + MTD LTR MaLR 3 384 -35 2 933 24 67 0 0 chr3 45638846 45638891 -113960892 + AT_rich Low_complexity Low_complexity 1 45 0 2 933 21 36 0 0 chr3 45639404 45639432 -113960351 + AT_rich Low_complexity Low_complexity 1 28 0 2 933 18968 114 51 16 chr3 45639600 45641857 -113957926 - L1_Mus2 LINE L1 0 6566 4196 2 933 513 0 0 0 chr3 45641857 45641914 -113957869 + (TA)n Simple_repeat Simple_repeat 2 58 0 2 933 18968 133 26 9 chr3 45641914 45642633 -113957150 - L1_Mus2 LINE L1 -1688 4195 3481 2 933 3396 93 0 10 chr3 45642633 45643113 -113956670 - L1Md_F2 LINE L1 -10 6572 6098 2 933 18968 133 26 9 chr3 45643113 45644018 -113955765 - L1_Mus2 LINE L1 -2403 3480 2578 2 933 3063 70 0 0 chr3 45644021 45644422 -113955361 - L1Md_F2 LINE L1 0 6582 6182 2 933 4517 74 5 0 chr3 45644422 45645087 -113954696 + L1Md_F2 LINE L1 5502 6169 -413 2 933 3608 151 1 8 chr3 45645085 45645738 -113954045 - L1_Mus2 LINE L1 -3291 2592 1944 2 933 27848 80 3 0 chr3 45645748 45650408 -113949375 - L1Md_F LINE L1 -841 5042 371 2 933 477 245 7 0 chr3 45650445 45650588 -113949195 + L1_Mur3 LINE L1 2075 2218 -3662 2 933 287 209 138 37 chr3 45650627 45650736 -113949047 - Lx9 LINE L1 -312 7332 7213 2 933 1389 199 72 8 chr3 45651074 45651464 -113948319 - L1_Mur3 LINE L1 -1351 4529 4115 2 933 227 366 22 15 chr3 45652050 45652186 -113947597 - Lx9 LINE L1 -846 6798 6662 2 933 7822 38 34 1 chr3 45652244 45652314 -113947469 - L1Md_T LINE L1 0 6582 6481 2 933 182 33 0 62 chr3 45652314 45652346 -113947437 + (CCCA)n Simple_repeat Simple_repeat 4 33 0 2 933 13336 33 10 0 chr3 45652346 45654526 -113945257 - L1Md_T LINE L1 -102 6480 4299 2 933 697 307 45 68 chr3 45654683 45654814 -113944969 + Lx9 LINE L1 6805 6942 -702 2 933 1065 149 22 0 chr3 45654814 45654995 -113944788 - B2_Mm2 SINE B2 -10 185 1 2 933 697 307 45 68 chr3 45654995 45655244 -113944539 + Lx9 LINE L1 6943 7176 -468 2 933 3573 106 30 8 chr3 45656014 45656749 -113943034 - Lx3_Mus LINE L1 -897 6112 5364 2 933 383 375 99 17 chr3 45656792 45657126 -113942657 + MTE2b LTR MaLR 3 364 -15 2 933 211 288 0 24 chr3 45658207 45658289 -113941494 + (TATATG)n Simple_repeat Simple_repeat 5 84 0 2 933 868 312 76 12 chr3 45659013 45659357 -113940426 + ORR1D2 LTR MaLR 1 366 -4 2 933 810 327 77 47 chr3 45659370 45659733 -113940050 + MTD LTR MaLR 46 419 0 2 933 357 283 15 23 chr3 45659902 45660047 -113939736 - RMER1B Other Other -16 1050 925 2 933 231 197 155 0 chr3 45660070 45660141 -113939642 + Lx5 LINE L1 6965 7046 -4 2 933 251 146 18 0 chr3 45660344 45660399 -113939384 + (TA)n Simple_repeat Simple_repeat 1 56 0 2 933 255 376 25 33 chr3 45661279 45661400 -113938383 - B3 SINE B2 -37 179 60 2 933 263 363 16 16 chr3 45661834 45661960 -113937823 - B1F SINE Alu 0 149 24 2 933 1037 71 35 0 chr3 45662073 45662214 -113937569 + B1_Mus1 SINE Alu 1 146 -2 2 933 237 125 70 18 chr3 45662214 45662271 -113937512 + (CCAA)n Simple_repeat Simple_repeat 4 63 0 2 933 396 71 0 0 chr3 45662287 45662343 -113937440 + (GAAA)n Simple_repeat Simple_repeat 2 57 0 2 933 652 213 140 48 chr3 45662646 45662853 -113936930 + URR1A DNA MER1_type 1 226 0 2 933 2004 210 90 27 chr3 45663119 45663642 -113936141 + Lx4B LINE L1 6503 7058 0 2 933 282 116 0 0 chr3 45663642 45663685 -113936098 + (TAAA)n Simple_repeat Simple_repeat 1 43 0 2 933 203 250 0 0 chr3 45663686 45663750 -113936033 + A-rich Low_complexity Low_complexity 1 64 0 2 933 800 135 0 0 chr3 45663797 45663923 -113935860 + L1_Mus2 LINE L1 6440 6565 -1 2 933 1083 76 14 0 chr3 45664875 45665019 -113934764 - B1_Mm SINE Alu 0 147 2 2 933 3386 25 5 0 chr3 45665345 45665739 -113934044 + MTA_Mm LTR MaLR 1 396 0 2 933 9108 36 2 4 chr3 45665739 45666839 -113932944 + MTA_Mm-int LTR MaLR 1 1098 0 2 933 3386 25 5 0 chr3 45666839 45667233 -113932550 + MTA_Mm LTR MaLR 1 396 0 2 933 25 31 0 0 chr3 45667371 45667403 -113932380 + AT_rich Low_complexity Low_complexity 1 32 0 2 933 491 272 8 23 chr3 45668457 45668585 -113931198 + B1_Mur3 SINE Alu 6 131 -18 2 933 198 0 0 0 chr3 45669302 45669324 -113930459 + (T)n Simple_repeat Simple_repeat 1 22 0 2 933 346 314 53 80 chr3 45669440 45669627 -113930156 + MTEb LTR MaLR 18 199 -180 2 933 234 0 0 0 chr3 45670348 45670374 -113929409 + (T)n Simple_repeat Simple_repeat 1 26 0 2 933 23 0 0 0 chr3 45670624 45670647 -113929136 + AT_rich Low_complexity Low_complexity 1 23 0 2 933 21 57 0 0 chr3 45671565 45671600 -113928183 + AT_rich Low_complexity Low_complexity 1 35 0 2 933 1189 308 62 45 chr3 45671617 45672386 -113927397 + Lx9 LINE L1 6863 7644 0 2 933 225 0 0 0 chr3 45674297 45674322 -113925461 + (TA)n Simple_repeat Simple_repeat 1 25 0 2 933 235 177 0 31 chr3 45675546 45675610 -113924173 + (TA)n Simple_repeat Simple_repeat 1 62 0 2 933 23 54 0 0 chr3 45675619 45675656 -113924127 + AT_rich Low_complexity Low_complexity 1 37 0 2 933 276 30 0 0 chr3 45675672 45675705 -113924078 + (CA)n Simple_repeat Simple_repeat 2 34 0 2 933 302 336 0 46 chr3 45676943 45677052 -113922731 + PB1D10 SINE Alu 13 116 -1 2 933 4418 61 8 2 chr3 45677780 45678369 -113921414 + L1_Mm LINE L1 4218 4810 -1073 2 933 1582 180 12 20 chr3 45678372 45678685 -113921098 - RLTR10E LTR ERVK -7 404 1 2 933 4112 128 32 6 chr3 45678685 45679343 -113920440 - IAPEY3-int LTR ERVK 0 7680 7006 2 933 1453 111 111 0 chr3 45679362 45679587 -113920196 - IAP-d-int LTR ERVK -1286 5256 5007 2 933 343 175 0 0 chr3 45679587 45679644 -113920139 - IAP-d-int LTR ERVK -6039 503 447 2 933 2390 266 59 35 chr3 45679661 45680604 -113919179 - IAPEY3-int LTR ERVK -6015 1566 535 2 933 343 237 40 88 chr3 45680657 45680805 -113918978 - IAPEY3-int LTR ERVK -7539 141 1 2 933 1608 183 11 22 chr3 45680805 45681124 -113918659 - RLTR10E LTR ERVK 0 475 1 2 933 5439 97 13 10 chr3 45681124 45681561 -113918222 + L1Md_F2 LINE L1 4805 5243 -640 2 933 630 43 32 0 chr3 45681561 45681655 -113918128 + (TA)n Simple_repeat Simple_repeat 1 97 0 2 933 5439 97 13 10 chr3 45681655 45681995 -113917788 + L1Md_F2 LINE L1 5244 5584 -299 2 933 7382 74 7 3 chr3 45681997 45682974 -113916809 + L1Md_F2 LINE L1 5587 6567 -15 2 933 817 103 234 13 chr3 45683283 45683441 -113916342 - B2_Mm2 SINE B2 -1 194 2 2 933 418 313 12 62 chr3 45683627 45683787 -113915996 - B3 SINE B2 0 216 65 2 933 25 83 0 0 chr3 45684000 45684060 -113915723 + AT_rich Low_complexity Low_complexity 1 60 0 2 933 939 8 16 8 chr3 45685211 45685332 -113914451 + (TAGA)n Simple_repeat Simple_repeat 3 124 0 2 933 789 103 0 0 chr3 45685563 45685680 -113914103 + (GAAA)n Simple_repeat Simple_repeat 4 120 0 2 933 186 207 0 0 chr3 45686564 45686622 -113913161 + A-rich Low_complexity Low_complexity 1 58 0 2 933 279 54 0 0 chr3 45687115 45687152 -113912631 + (TTG)n Simple_repeat Simple_repeat 3 39 0 2 933 435 52 0 0 chr3 45687192 45687250 -113912533 + (TG)n Simple_repeat Simple_repeat 1 58 0 2 933 423 0 0 0 chr3 45687574 45687621 -113912162 + (TC)n Simple_repeat Simple_repeat 1 47 0 2 933 321 26 0 0 chr3 45687621 45687658 -113912125 + (CA)n Simple_repeat Simple_repeat 1 38 0 2 933 28 29 0 0 chr3 45688366 45688401 -113911382 + AT_rich Low_complexity Low_complexity 1 35 0 2 933 7141 120 78 21 chr3 45691080 45692393 -113907390 + L1_Mm LINE L1 3026 4413 -1470 3 933 198 0 0 0 chr3 45692487 45692509 -113907274 + (TAGA)n Simple_repeat Simple_repeat 1 22 0 3 933 922 280 20 30 chr3 45692979 45693074 -113906709 - Lx6 LINE L1 0 7460 7367 3 933 531 56 0 0 chr3 45693074 45693145 -113906638 + (CA)n Simple_repeat Simple_repeat 1 71 0 3 933 922 292 131 18 chr3 45693145 45693482 -113906301 - Lx6 LINE L1 -94 7366 6991 3 933 817 81 8 8 chr3 45694193 45694317 -113905466 + (TTTC)n Simple_repeat Simple_repeat 2 125 0 3 933 5726 187 42 12 chr3 45694335 45695471 -113904312 - Lx4A LINE L1 -107 6951 5782 3 933 5834 63 1 1 chr3 45695480 45696225 -113903558 - L1_Mus1 LINE L1 -2 6565 5821 3 933 1971 86 18 0 chr3 45696225 45696504 -113903279 + L1_Mm LINE L1 5206 5489 -394 3 933 344 107 0 0 chr3 45696505 45696561 -113903222 - Lx4A LINE L1 -1262 5796 5741 3 933 215 79 0 26 chr3 45696562 45696601 -113903182 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 3 933 396 153 0 0 chr3 45696625 45696710 -113903073 + T-rich Low_complexity Low_complexity 1 85 0 3 933 37906 11 1 8 chr3 45696738 45701954 -113897829 + L1Md_A LINE L1 418 5586 -297 3 933 8784 13 0 0 chr3 45701954 45702948 -113896835 + L1Md_A LINE L1 5587 6580 -2 3 933 1698 167 51 0 chr3 45702949 45703261 -113896522 - Lx4A LINE L1 -201 5676 5349 3 933 5856 154 26 2 chr3 45703295 45704289 -113895494 - Lx3A LINE L1 -2 6979 5962 3 933 379 176 73 0 chr3 45704290 45704358 -113895425 + B2_Mm2 SINE B2 52 124 -71 3 933 351 0 0 0 chr3 45704369 45704408 -113895375 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 3 933 3490 112 23 40 chr3 45704408 45704983 -113894800 - Lx LINE L1 -16 6638 6074 3 933 2758 221 48 112 chr3 45704983 45705416 -113894367 - L1_Mur3 LINE L1 -2881 2999 2600 3 933 3046 43 0 0 chr3 45705416 45705790 -113893993 - L1Md_F2 LINE L1 -12 6570 6197 3 933 2758 221 48 112 chr3 45705790 45705978 -113893805 - L1_Mur3 LINE L1 -3281 2599 2403 3 933 1605 180 59 3 chr3 45705978 45706285 -113893498 + Lx4A LINE L1 6733 7056 -2 3 933 2758 221 48 112 chr3 45706285 45706588 -113893195 - L1_Mur3 LINE L1 -3478 2402 2124 3 933 2635 81 19 8 chr3 45706588 45706961 -113892822 + L1_Mus1 LINE L1 6189 6565 -2 3 933 2758 221 48 112 chr3 45706961 45707033 -113892750 - L1_Mur3 LINE L1 -3757 2123 2067 3 933 417 20 0 0 chr3 45707033 45707083 -113892700 + (TG)n Simple_repeat Simple_repeat 2 51 0 3 933 2758 221 48 112 chr3 45707083 45707167 -113892616 - L1_Mur3 LINE L1 -3814 2066 1981 3 933 2261 42 3 3 chr3 45707167 45707453 -113892330 - L1Md_F2 LINE L1 0 6582 6297 3 933 2758 221 48 112 chr3 45707453 45707514 -113892269 - L1_Mur3 LINE L1 -3900 1980 1929 3 933 1018 215 4 18 chr3 45707592 45707819 -113891964 - Lx2 LINE L1 0 7000 6777 3 933 6373 153 20 7 chr3 45707819 45709069 -113890714 - Lx2 LINE L1 -351 6646 5381 3 933 418 165 87 0 chr3 45709091 45709194 -113890589 + Lx9 LINE L1 7531 7642 -2 3 933 664 148 41 0 chr3 45709213 45709335 -113890448 - L1_Mur3 LINE L1 -3975 1905 1779 3 933 1875 302 34 32 chr3 45709338 45710067 -113889716 - L1_Mur3 LINE L1 -6945 783 53 3 933 555 29 0 0 chr3 45710793 45710862 -113888921 + (TG)n Simple_repeat Simple_repeat 2 70 0 3 933 193 29 0 56 chr3 45711971 45712007 -113887776 + (CAAAAA)n Simple_repeat Simple_repeat 2 35 0 3 933 798 168 0 28 chr3 45712058 45712236 -113887547 + T-rich Low_complexity Low_complexity 3 175 0 3 933 564 282 80 22 chr3 45712239 45712616 -113887167 - MTD LTR MaLR -31 388 5 3 933 1849 47 0 21 chr3 45713103 45713342 -113886441 + L1Md_F3 LINE L1 6337 6570 -14 3 933 243 309 0 12 chr3 45713384 45713466 -113886317 + L1M5 LINE L1 3564 3644 -2502 3 933 268 291 79 43 chr3 45713752 45714057 -113885726 + L1M5 LINE L1 3949 4264 -1882 3 933 815 233 6 16 chr3 45714388 45714571 -113885212 - Lx7 LINE L1 -843 6853 6673 3 933 1475 302 33 33 chr3 45714566 45715111 -113884672 + Lx7 LINE L1 6866 7410 -286 3 933 243 295 21 0 chr3 45715213 45715308 -113884475 + Lx7 LINE L1 7592 7688 -8 3 933 4152 236 68 18 chr3 45716319 45717338 -113882445 - Lx5 LINE L1 -9 7041 5972 3 933 893 290 42 47 chr3 45717424 45717804 -113881979 + Lx6 LINE L1 7079 7456 -4 3 933 1144 148 72 0 chr3 45718438 45718647 -113881136 + L1_Mus3 LINE L1 6415 6638 0 3 933 22805 101 6 7 chr3 45718883 45720710 -113879073 - L1_Mus1 LINE L1 0 6567 4737 3 933 261 0 0 0 chr3 45720710 45720739 -113879044 + (TTTTG)n Simple_repeat Simple_repeat 3 31 0 3 933 22805 122 11 15 chr3 45720739 45724320 -113875463 - L1_Mus1 LINE L1 -1147 4736 1148 3 933 7484 75 0 5 chr3 45724339 45725370 -113874413 - L1Md_F2 LINE L1 -12 6570 5545 3 933 3577 94 2 2 chr3 45725367 45725878 -113873905 + L1_Mm LINE L1 3410 3920 -1963 3 933 3100 200 51 6 chr3 45725871 45726520 -113873263 - L1_Mus1 LINE L1 -5428 1188 511 3 933 534 348 123 85 chr3 45727057 45727374 -113872409 - MLT1A1 LTR MaLR -8 366 38 3 933 349 335 79 38 chr3 45727422 45727689 -113872094 - MLT1C LTR MaLR -189 278 1 3 933 341 370 93 51 chr3 45727945 45728159 -113871624 - B4A SINE B4 -64 228 6 3 933 220 200 12 12 chr3 45728631 45728712 -113871071 + CT-rich Low_complexity Low_complexity 2 82 0 3 933 35 0 0 0 chr3 45729090 45729125 -113870658 + AT_rich Low_complexity Low_complexity 1 35 0 3 933 664 218 82 68 chr3 45730044 45730251 -113869532 + B3 SINE B2 2 211 -5 3 933 2036 303 76 14 chr3 45730468 45731229 -113868554 + Lx8 LINE L1 6132 6939 -534 3 933 370 410 10 0 chr3 45731367 45731572 -113868211 + Lx8 LINE L1 7113 7319 -154 3 933 315 276 44 59 chr3 45731682 45731817 -113867966 + L1M2 LINE L1 3012 3144 -2999 3 933 1113 283 73 27 chr3 45731829 45732414 -113867369 - L1_Rod LINE L1 -3529 2318 1707 3 933 6475 143 24 39 chr3 45732427 45734012 -113865771 - Lx LINE L1 -6 6648 5064 3 933 4287 171 3 4 chr3 45734000 45734718 -113865065 - L1VL2 LINE L1 -5554 781 65 3 933 702 274 97 21 chr3 45734727 45735160 -113864623 - L1_Rod LINE L1 -4153 1694 1229 3 933 734 311 68 58 chr3 45735235 45735737 -113864046 + Lx9 LINE L1 6962 7468 -176 3 933 290 212 0 0 chr3 45736082 45736148 -113863635 - Lx9 LINE L1 -197 7447 7382 3 933 315 0 0 0 chr3 45736353 45736388 -113863395 + (TTG)n Simple_repeat Simple_repeat 2 36 0 3 933 243 0 0 0 chr3 45736388 45736415 -113863368 + (GTTTG)n Simple_repeat Simple_repeat 2 28 0 3 933 746 269 41 41 chr3 45736438 45736709 -113863074 - Lx9 LINE L1 -407 7237 6967 3 933 703 163 6 58 chr3 45736723 45736879 -113862904 + Lx LINE L1 6480 6627 -27 3 933 268 224 17 0 chr3 45736913 45736971 -113862812 - Lx9 LINE L1 -720 6924 6866 3 933 347 274 129 0 chr3 45736971 45737095 -113862688 + Lx9 LINE L1 7319 7458 -186 3 933 450 0 0 0 chr3 45737104 45737154 -113862629 + (TC)n Simple_repeat Simple_repeat 2 51 0 3 933 207 0 0 0 chr3 45737154 45737176 -113862607 + (TG)n Simple_repeat Simple_repeat 2 24 0 3 933 26 30 0 0 chr3 45737272 45737305 -113862478 + AT_rich Low_complexity Low_complexity 1 33 0 3 933 509 364 48 33 chr3 45737917 45738315 -113861468 - L2 LINE L2 -499 2920 2517 3 933 281 244 38 13 chr3 45738479 45738558 -113861225 + Kanga11a DNA Tc2 30 110 -860 3 933 232 192 18 71 chr3 45739346 45739402 -113860381 - MLT2B2 LTR ERVL -453 62 10 3 933 306 181 42 0 chr3 45740791 45740863 -113858920 - Lx2B LINE L1 -4 6996 6922 3 933 741 260 0 29 chr3 45741097 45741307 -113858476 - Lx6 LINE L1 -4 7456 7253 3 933 653 246 46 17 chr3 45741296 45741470 -113858313 + Lx6 LINE L1 7057 7235 -225 3 933 252 0 0 0 chr3 45741876 45741904 -113857879 + (TA)n Simple_repeat Simple_repeat 2 29 0 3 933 987 286 53 43 chr3 45742321 45742621 -113857162 + ORR1D2 LTR MaLR 10 312 -58 3 116 7547 158 45 17 chr3 45742621 45744341 -113855442 + Lx4A LINE L1 5283 7057 -1 3 934 240 300 105 21 chr3 45744513 45744656 -113855127 + L1MC3 LINE L1 7308 7462 -323 3 934 270 0 0 0 chr3 45744717 45744747 -113855036 + (A)n Simple_repeat Simple_repeat 1 30 0 3 934 315 314 33 109 chr3 45744770 45744981 -113854802 + L1MC3 LINE L1 7576 7770 -15 3 934 24 53 0 0 chr3 45746120 45746158 -113853625 + AT_rich Low_complexity Low_complexity 1 38 0 3 934 3205 97 9 0 chr3 45746525 45746979 -113852804 - L1_Mus4 LINE L1 -7 6629 6172 3 934 2348 105 3 3 chr3 45747177 45747511 -113852272 - L1_Mus1 LINE L1 0 6567 6234 3 934 1053 87 0 0 chr3 45747511 45747649 -113852134 + L1_Mus1 LINE L1 6106 6243 -324 3 934 2680 76 6 3 chr3 45748134 45748478 -113851305 + L1_Mus1 LINE L1 5436 5780 -103 3 934 7022 67 3 4 chr3 45748482 45749390 -113850393 - L1Md_F2 LINE L1 -3 6579 5673 3 934 5500 88 28 9 chr3 45749390 45749554 -113850229 + L1_Mus1 LINE L1 5770 5942 -625 3 934 351 0 0 0 chr3 45749554 45749593 -113850190 + (CA)n Simple_repeat Simple_repeat 2 40 0 3 934 5500 88 28 9 chr3 45749593 45750210 -113849573 + L1_Mus1 LINE L1 5943 6564 -3 3 934 471 78 0 0 chr3 45750499 45750563 -113849220 + (T)n Simple_repeat Simple_repeat 1 64 0 3 934 537 68 0 0 chr3 45751179 45751253 -113848530 + (TG)n Simple_repeat Simple_repeat 1 74 0 3 934 451 318 96 5 chr3 45751255 45751454 -113848329 + L2 LINE L2 1907 2123 -1296 3 934 2699 7 0 0 chr3 45751660 45751963 -113847820 - L1Md_A LINE L1 0 6582 6280 3 934 21387 134 15 37 chr3 45752222 45756166 -113843617 - L1Md_F LINE L1 -913 4970 1115 3 934 6793 37 1 6 chr3 45756166 45756989 -113842794 - L1Md_F2 LINE L1 0 6582 5764 3 934 2704 236 52 41 chr3 45756989 45757849 -113841934 - L1Md_F LINE L1 -5523 1115 231 3 934 236 208 0 0 chr3 45757861 45757909 -113841874 + T-rich Low_complexity Low_complexity 1 48 0 3 934 318 43 21 0 chr3 45757912 45757959 -113841824 - L1_Mus2 LINE L1 -10 6556 6509 3 934 21 36 0 0 chr3 45758077 45758105 -113841678 + AT_rich Low_complexity Low_complexity 1 28 0 3 934 24 67 0 0 chr3 45758469 45758514 -113841269 + AT_rich Low_complexity Low_complexity 1 45 0 3 934 1057 250 48 4 chr3 45758767 45759036 -113840747 - MTD LTR MaLR -133 286 6 3 934 7025 127 7 11 chr3 45759380 45760449 -113839334 - Lx LINE L1 -4 6650 5587 3 934 5622 183 28 8 chr3 45760449 45761603 -113838180 + L1_Mur2 LINE L1 4171 5347 -530 3 934 414 366 22 0 chr3 45761968 45762102 -113837681 - B4 SINE B4 -147 145 9 3 934 454 129 24 0 chr3 45762111 45762196 -113837587 + CT-rich Low_complexity Low_complexity 3 89 0 3 934 416 362 14 7 chr3 45762594 45762733 -113837050 - B1_Mur2 SINE Alu -7 142 3 3 934 8244 69 1 0 chr3 45763192 45764334 -113835449 - L1Md_F2 LINE L1 -627 5955 4812 3 934 3505 116 27 14 chr3 45764334 45764892 -113834891 + L1Md_F2 LINE L1 6016 6580 -2 3 934 354 23 0 0 chr3 45765850 45765893 -113833890 + (CA)n Simple_repeat Simple_repeat 2 44 0 3 934 468 299 14 0 chr3 45765896 45766043 -113833740 - Lx9 LINE L1 -174 7470 7322 3 934 1175 63 0 0 chr3 45766094 45766237 -113833546 + B1_Mm SINE Alu 1 143 -4 3 934 8865 112 17 4 chr3 45766264 45767263 -113832520 - Lx3A LINE L1 -57 6924 5917 3 934 204 40 0 0 chr3 45767263 45767288 -113832495 + (TTA)n Simple_repeat Simple_repeat 2 26 0 3 934 8865 109 252 11 chr3 45767288 45768036 -113831747 - Lx3A LINE L1 -1065 5916 4984 3 934 1342 108 0 5 chr3 45768034 45768239 -113831544 - Lx3A LINE L1 -1123 4763 4560 3 934 495 203 113 0 chr3 45768343 45768476 -113831307 - Lx3_Mus LINE L1 -8 7001 6854 3 934 340 356 84 22 chr3 45768477 45768704 -113831079 - Tigger7 DNA MER2_type -2213 278 38 3 934 45 0 0 0 chr3 45768926 45768971 -113830812 + AT_rich Low_complexity Low_complexity 1 45 0 3 934 1111 75 0 20 chr3 45768972 45768983 -113830800 - B1_Mm SINE Alu 0 147 139 3 934 315 0 0 0 chr3 45768983 45769018 -113830765 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 3 934 1111 75 0 20 chr3 45769018 45769156 -113830627 - B1_Mm SINE Alu -9 138 1 3 934 208 292 26 17 chr3 45769177 45769292 -113830491 + (TCTA)n Simple_repeat Simple_repeat 2 117 0 4 934 26 30 0 0 chr3 45769376 45769409 -113830374 + AT_rich Low_complexity Low_complexity 1 33 0 4 934 1808 178 0 60 chr3 45770343 45770690 -113829093 + ORR1A3 LTR MaLR 1 326 0 4 934 442 20 0 0 chr3 45772083 45772134 -113827649 - L1Md_T LINE L1 -327 6255 6205 4 934 1911 47 0 0 chr3 45772134 45772367 -113827416 + L1Md_T LINE L1 6347 6579 -3 4 934 662 324 63 119 chr3 45773080 45773507 -113826276 - MTD LTR MaLR 0 419 17 4 934 227 344 104 55 chr3 45773688 45773851 -113825932 - B4A SINE B4 -118 174 4 4 934 342 0 0 0 chr3 45774169 45774207 -113825576 + (TAAA)n Simple_repeat Simple_repeat 3 40 0 4 934 375 23 0 0 chr3 45775078 45775122 -113824661 + (CA)n Simple_repeat Simple_repeat 1 44 0 4 934 21 0 0 0 chr3 45775136 45775157 -113824626 + AT_rich Low_complexity Low_complexity 1 21 0 4 934 522 227 163 56 chr3 45777059 45777255 -113822528 - ORR1C2 LTR MaLR 0 384 168 4 934 367 245 13 7 chr3 45777309 45777461 -113822322 + GA-rich Low_complexity Low_complexity 4 156 0 4 934 387 316 13 7 chr3 45777461 45777632 -113822151 - ORR1C2 LTR MaLR -191 183 4 4 934 697 307 94 13 chr3 45778553 45778926 -113820857 - RMER15-int LTR ERVL -3932 1067 665 4 934 332 375 37 0 chr3 45779369 45779505 -113820278 - RMER15-int LTR ERVL -4773 226 86 4 934 230 416 72 6 chr3 45779621 45779788 -113819995 - RMER15 LTR ERVL -48 527 350 4 934 3408 187 11 1 chr3 45780445 45781104 -113818679 - Lx2B LINE L1 0 7000 6336 4 934 479 146 27 18 chr3 45781126 45781238 -113818545 + Lx2B LINE L1 6816 6928 -72 4 934 3273 179 15 0 chr3 45781224 45781816 -113817967 - Lx2B LINE L1 -657 6340 5740 4 934 304 319 49 36 chr3 45781995 45782231 -113817552 - L1MB8 LINE L1 -148 6026 5793 4 934 279 167 38 13 chr3 45782241 45782320 -113817463 - Lx2A LINE L1 -5 7003 6923 4 934 1113 170 10 0 chr3 45782319 45782513 -113817270 - Lx2A LINE L1 -40 6968 6773 4 934 611 165 0 0 chr3 45782513 45782610 -113817173 + U6 snRNA snRNA 4 100 -7 4 934 24 67 0 0 chr3 45783084 45783129 -113816654 + AT_rich Low_complexity Low_complexity 1 45 0 4 934 1221 104 0 90 chr3 45783172 45783383 -113816400 - L1_Mus2 LINE L1 -1 6565 6374 4 934 561 15 0 0 chr3 45783905 45783971 -113815812 + (TG)n Simple_repeat Simple_repeat 2 67 0 4 934 291 388 43 0 chr3 45783982 45784098 -113815685 - RSINE1 SINE B4 -19 146 26 4 934 303 276 10 20 chr3 45784186 45784286 -113815497 - L1M4c LINE L1 -6229 155 57 4 934 1014 93 0 0 chr3 45784534 45784673 -113815110 + B1_Mm SINE Alu 9 147 0 4 934 503 71 24 0 chr3 45784673 45784757 -113815026 + (CAAA)n Simple_repeat Simple_repeat 3 88 0 4 934 398 333 40 95 chr3 45784953 45785175 -113814608 - B4 SINE B4 -69 223 14 4 934 25 0 0 0 chr3 45785312 45785337 -113814446 + AT_rich Low_complexity Low_complexity 1 25 0 4 934 1058 112 17 6 chr3 45786398 45786577 -113813206 - L1_Mus3 LINE L1 -6 6632 6452 4 934 449 83 0 0 chr3 45786582 45786642 -113813141 + L1_Mus3 LINE L1 6373 6432 -206 4 934 654 13 0 0 chr3 45787569 45787644 -113812139 + (TA)n Simple_repeat Simple_repeat 2 76 0 4 934 908 115 0 35 chr3 45787677 45787821 -113811962 - B1_Mus1 SINE Alu 0 148 10 4 934 485 259 12 81 chr3 45787821 45787847 -113811936 - ID_B1 SINE B4 0 222 65 4 934 30 27 0 0 chr3 45787915 45787952 -113811831 + AT_rich Low_complexity Low_complexity 1 37 0 4 934 4336 43 4 2 chr3 45788142 45788676 -113811107 - L1Md_F3 LINE L1 -1 6583 6049 4 934 299 375 0 9 chr3 45788687 45788800 -113810983 - PB1D10 SINE Alu -3 114 3 4 934 510 345 36 76 chr3 45789121 45789204 -113810579 + ORR1D2 LTR MaLR 4 79 -291 4 934 252 0 0 0 chr3 45789204 45789232 -113810551 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 4 934 1107 70 0 0 chr3 45789232 45789374 -113810409 - B1_Mm SINE Alu -3 144 3 4 934 510 345 36 76 chr3 45789374 45789593 -113810190 + ORR1D2 LTR MaLR 80 294 -76 4 934 206 229 0 14 chr3 45789602 45789673 -113810110 + (TG)n Simple_repeat Simple_repeat 1 70 0 4 934 204 40 0 0 chr3 45789737 45789762 -113810021 + (TA)n Simple_repeat Simple_repeat 2 26 0 4 934 438 20 0 0 chr3 45789762 45789812 -113809971 + (TG)n Simple_repeat Simple_repeat 2 52 0 4 934 37087 34 12 11 chr3 45789833 45791481 -113808302 - L1Md_A LINE L1 -1 6581 4914 4 934 258 150 46 77 chr3 45791481 45791546 -113808237 + RMER20A LTR ERVK 186 248 -268 4 934 37087 34 12 11 chr3 45791546 45795210 -113804573 - L1Md_A LINE L1 -1 4913 1203 4 934 4624 128 98 26 chr3 45795176 45796044 -113803739 - L1Md_F LINE L1 -5380 1139 210 4 934 300 81 0 75 chr3 45796099 45796192 -113803591 + Lx3A LINE L1 6896 6981 0 4 934 210 71 0 0 chr3 45796395 45796423 -113803360 + (CAAAG)n Simple_repeat Simple_repeat 2 29 0 4 934 449 292 128 51 chr3 45798545 45798819 -113800964 - RLTR10A LTR ERVK 0 411 117 4 934 250 280 73 47 chr3 45798877 45799027 -113800756 - RSINE1 SINE B4 -8 157 4 4 934 1316 199 84 0 chr3 45799121 45799453 -113800330 - L1_Mur2 LINE L1 -2472 3405 3046 4 934 183 80 0 0 chr3 45799453 45799478 -113800305 + (TCC)n Simple_repeat Simple_repeat 2 26 0 4 934 327 170 67 11 chr3 45799483 45799572 -113800211 - L1_Mur2 LINE L1 -2792 3085 2992 4 934 762 180 81 0 chr3 45799578 45799739 -113800044 - Lx2 LINE L1 -1 6996 6823 4 934 469 165 0 0 chr3 45799732 45799811 -113799972 - L1_Mur2 LINE L1 -2885 2992 2914 4 934 21 0 0 0 chr3 45800849 45800870 -113798913 + AT_rich Low_complexity Low_complexity 1 21 0 4 934 189 74 0 0 chr3 45800913 45800940 -113798843 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 4 934 450 250 62 0 chr3 45801239 45801351 -113798432 - ID_B1 SINE B4 0 224 106 4 934 318 297 11 11 chr3 45801709 45801801 -113797982 - B4A SINE B4 -8 284 193 4 934 2301 203 107 27 chr3 45801803 45802432 -113797351 + RMER6C LTR ERVK 1 679 -11 4 934 363 356 77 28 chr3 45802448 45802630 -113797153 - B4 SINE B4 -100 192 2 4 934 204 214 14 28 chr3 45802689 45802761 -113797022 + (TTATA)n Simple_repeat Simple_repeat 5 75 0 4 934 12623 241 65 31 chr3 45802782 45807621 -113792162 - Lx5 LINE L1 -36 7022 2051 4 934 270 278 0 0 chr3 45807622 45807694 -113792089 + (TG)n Simple_repeat Simple_repeat 2 73 0 4 934 878 287 38 15 chr3 45807728 45808071 -113791712 - Lx5 LINE L1 -6490 1238 888 4 934 180 0 0 0 chr3 45808076 45808096 -113791687 + (TTG)n Simple_repeat Simple_repeat 2 21 0 4 934 3388 91 19 2 chr3 45808916 45809381 -113790402 - MT2C_Mm LTR ERVL 0 475 3 4 934 288 0 0 0 chr3 45809427 45809459 -113790324 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 4 934 527 332 57 9 chr3 45810550 45810778 -113789005 + MER90 LTR ERV1 3 241 -334 4 934 665 183 21 0 chr3 45811135 45811277 -113788506 - Lx5 LINE L1 0 7050 6906 4 934 335 385 37 0 chr3 45811378 45811487 -113788296 + B3A SINE B2 63 175 -23 4 934 342 0 0 0 chr3 45811573 45811611 -113788172 + (CA)n Simple_repeat Simple_repeat 2 39 0 4 934 1564 67 19 0 chr3 45811662 45811872 -113787911 - L1Md_F2 LINE L1 -619 5264 5051 4 934 4738 63 8 31 chr3 45811872 45812209 -113787574 + L1Md_F2 LINE L1 5245 5580 -303 4 934 1452 159 14 87 chr3 45812209 45812554 -113787229 + RLTRETN_Mm LTR ERVK 3 322 0 4 934 7281 70 7 23 chr3 45812554 45813565 -113786218 + L1Md_F2 LINE L1 5581 6572 -10 4 934 547 359 106 45 chr3 45813660 45813820 -113785963 + MLT1E2 LTR MaLR 22 183 -444 4 934 603 0 0 0 chr3 45813820 45813887 -113785896 + (TC)n Simple_repeat Simple_repeat 1 67 0 4 934 547 362 98 47 chr3 45813887 45814294 -113785489 + MLT1E2 LTR MaLR 184 618 -6 4 934 5370 193 26 39 chr3 45815038 45816174 -113783609 - Lx2B LINE L1 0 7000 5879 4 934 26 30 0 0 chr3 45816465 45816498 -113783285 + AT_rich Low_complexity Low_complexity 1 33 0 4 934 847 101 0 102 chr3 45817136 45817302 -113782481 + L1_Mus1 LINE L1 6419 6567 0 4 934 27 0 0 0 chr3 45817302 45817329 -113782454 + AT_rich Low_complexity Low_complexity 1 27 0 4 934 855 288 52 13 chr3 45817523 45817757 -113782026 - MTD LTR MaLR -14 405 177 4 934 4319 166 72 80 chr3 45817917 45818819 -113780964 + RMER19B LTR ERVK 1 895 -7 4 934 380 335 43 37 chr3 45818907 45819071 -113780712 - MTD LTR MaLR -243 176 12 4 934 442 111 0 40 chr3 45819340 45819415 -113780368 - B1_Mus2 SINE Alu -1 146 75 4 934 228 350 50 20 chr3 45820698 45820797 -113778986 - MLT1J LTR MaLR -335 177 76 4 934 1375 49 5 26 chr3 45821502 45821691 -113778092 - L1Md_F2 LINE L1 -8 6574 6390 4 934 26 0 0 0 chr3 45822023 45822049 -113777734 + AT_rich Low_complexity Low_complexity 1 26 0 4 934 381 43 0 0 chr3 45822437 45822484 -113777299 + (TA)n Simple_repeat Simple_repeat 1 47 0 4 934 293 397 15 0 chr3 45822817 45822953 -113776830 + RSINE1 SINE B4 14 151 -14 4 934 216 331 15 0 chr3 45822972 45823105 -113776678 + A-rich Low_complexity Low_complexity 6 140 0 4 934 1805 219 37 2 chr3 45823151 45823558 -113776225 - MTC LTR MaLR 0 421 1 4 934 544 318 36 5 chr3 45823763 45823987 -113775796 - Tigger13a DNA MER2_type -242 529 299 4 934 313 196 148 40 chr3 45825088 45825189 -113774594 - L2 LINE L2 -798 2621 2510 4 934 692 254 9 15 chr3 45825627 45825849 -113773934 + Lx4B LINE L1 6734 7051 -7 4 934 558 304 87 7 chr3 45826036 45826185 -113773598 + B3A SINE B2 6 166 -32 4 934 21 0 0 0 chr3 45826520 45826541 -113773242 + AT_rich Low_complexity Low_complexity 1 21 0 4 934 276 289 29 54 chr3 45826669 45826841 -113772942 + L1M5 LINE L1 5574 5740 -424 4 934 22 0 0 0 chr3 45826998 45827020 -113772763 + AT_rich Low_complexity Low_complexity 1 22 0 4 934 28 48 0 0 chr3 45828120 45828162 -113771621 + AT_rich Low_complexity Low_complexity 1 42 0 4 934 35 0 0 0 chr3 45828212 45828247 -113771536 + AT_rich Low_complexity Low_complexity 1 35 0 4 934 25 0 0 0 chr3 45828452 45828477 -113771306 + AT_rich Low_complexity Low_complexity 1 25 0 4 934 225 275 32 32 chr3 45828682 45828806 -113770977 + (ATGTG)n Simple_repeat Simple_repeat 5 128 0 4 934 203 157 0 19 chr3 45828890 45828942 -113770841 + (ATGTG)n Simple_repeat Simple_repeat 2 52 0 4 934 672 59 10 0 chr3 45829471 45829573 -113770210 + L1Md_T LINE L1 6478 6580 -2 4 934 2274 136 13 3 chr3 45830004 45830387 -113769396 - L1_Mus3 LINE L1 0 6638 6252 4 934 298 168 35 42 chr3 45830716 45830859 -113768924 + (TA)n Simple_repeat Simple_repeat 1 142 0 4 934 352 306 97 0 chr3 45832831 45832975 -113766808 + ORR1E-int LTR MaLR 4 161 -1419 4 934 400 307 168 10 chr3 45832978 45833232 -113766551 + ORR1E-int LTR MaLR 1017 1344 -236 4 934 936 73 79 21 chr3 45833241 45833381 -113766402 - B1_Mus1 SINE Alu 0 148 1 4 934 552 299 57 83 chr3 45833528 45833878 -113765905 - Lx8 LINE L1 -136 7337 6997 5 934 1026 281 73 21 chr3 45833962 45834289 -113765494 + ORR1E LTR MaLR 9 352 -7 4 934 216 0 0 0 chr3 45835502 45835526 -113764257 + (CA)n Simple_repeat Simple_repeat 2 25 0 5 934 501 156 0 0 chr3 45835526 45835622 -113764161 + (TA)n Simple_repeat Simple_repeat 2 97 0 5 934 23 0 0 0 chr3 45837006 45837029 -113762754 + AT_rich Low_complexity Low_complexity 1 23 0 5 934 3220 206 77 11 chr3 45837228 45837892 -113761891 - RMER1A Other Other -15 1015 308 5 934 22 35 0 0 chr3 45838911 45838940 -113760843 + AT_rich Low_complexity Low_complexity 1 29 0 5 934 774 292 14 19 chr3 45838948 45839164 -113760619 - Lx5 LINE L1 -43 7007 6793 5 934 1464 209 39 52 chr3 45839233 45839616 -113760167 - ORR1C1 LTR MaLR 0 378 1 5 934 292 55 0 53 chr3 45840673 45840730 -113759053 + (CATA)n Simple_repeat Simple_repeat 3 56 0 5 934 28 48 0 0 chr3 45840993 45841035 -113758748 + AT_rich Low_complexity Low_complexity 1 42 0 5 934 3560 115 31 20 chr3 45841475 45842061 -113757722 - L1_Mus4 LINE L1 -4 6632 6041 5 934 327 302 0 20 chr3 45842370 45842485 -113757298 + B1F SINE Alu 1 113 -7 5 934 200 111 28 0 chr3 45842486 45842522 -113757261 + (TAA)n Simple_repeat Simple_repeat 1 37 0 5 934 22 0 0 0 chr3 45842522 45842544 -113757239 + AT_rich Low_complexity Low_complexity 1 22 0 5 934 441 0 0 0 chr3 45844179 45844228 -113755555 + (CA)n Simple_repeat Simple_repeat 2 50 0 5 934 244 319 87 25 chr3 45844436 45844632 -113755151 + LSU-rRNA_Hsa rRNA rRNA 4237 4444 -591 5 934 1013 66 7 0 chr3 45844658 45844794 -113754989 + B1_Mus1 SINE Alu 12 148 0 5 934 192 135 0 0 chr3 45844821 45844858 -113754925 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 5 934 323 269 0 0 chr3 45846564 45846631 -113753152 + PB1D10 SINE Alu 24 90 -27 5 934 312 296 0 58 chr3 45846631 45846650 -113753133 + ID_B1 SINE B4 105 185 -39 5 934 25 31 0 0 chr3 45846758 45846790 -113752993 + AT_rich Low_complexity Low_complexity 1 32 0 5 934 3176 123 29 170 chr3 45846892 45847767 -113752016 + RMER17A LTR ERVK 1 751 0 5 934 1368 122 9 9 chr3 45847785 45848008 -113751775 - Lx2 LINE L1 0 6997 6775 5 934 486 188 0 38 chr3 45848008 45848113 -113751670 - Lx2 LINE L1 -354 6643 6543 5 934 1143 311 130 10 chr3 45848262 45849082 -113750701 + Lx6 LINE L1 6542 7460 0 5 934 24 32 0 0 chr3 45850402 45850433 -113749350 + AT_rich Low_complexity Low_complexity 1 31 0 5 934 4334 104 8 0 chr3 45850606 45851220 -113748563 + L1_Mus3 LINE L1 6020 6638 0 5 934 300 241 12 25 chr3 45851260 45851341 -113748442 + Lx8 LINE L1 7160 7239 -234 5 934 243 79 0 0 chr3 45851341 45851379 -113748404 + (T)n Simple_repeat Simple_repeat 1 38 0 5 934 21 36 0 0 chr3 45851679 45851707 -113748076 + AT_rich Low_complexity Low_complexity 1 28 0 5 934 23 0 0 0 chr3 45851828 45851851 -113747932 + AT_rich Low_complexity Low_complexity 1 23 0 5 934 2316 78 6 27 chr3 45853121 45853450 -113746333 + ORR1A1 LTR MaLR 1 322 -24 5 934 4033 124 20 12 chr3 45854025 45854685 -113745098 - Lx2 LINE L1 0 6997 6333 5 934 631 328 56 15 chr3 45854725 45854920 -113744863 - B3 SINE B2 0 216 14 5 934 923 162 0 11 chr3 45855661 45855842 -113743941 + CT-rich Low_complexity Low_complexity 2 180 0 5 934 621 0 0 0 chr3 45855922 45855991 -113743792 + (GAA)n Simple_repeat Simple_repeat 2 70 0 5 934 28 71 0 0 chr3 45856240 45856296 -113743487 + AT_rich Low_complexity Low_complexity 1 56 0 5 934 207 188 0 0 chr3 45856438 45856486 -113743297 + (CAT)n Simple_repeat Simple_repeat 2 49 0 5 934 487 323 0 0 chr3 45856486 45856619 -113743164 - B1_Mur2 SINE Alu -16 133 1 5 934 26 74 0 0 chr3 45856654 45856708 -113743075 + AT_rich Low_complexity Low_complexity 1 54 0 5 934 883 114 0 11 chr3 45856782 45856959 -113742824 + (TA)n Simple_repeat Simple_repeat 2 176 0 5 934 1001 106 0 0 chr3 45857272 45857414 -113742369 - B1_Mus1 SINE Alu -2 146 5 5 934 571 244 12 31 chr3 45859375 45859536 -113740247 - Lx7 LINE L1 0 7696 7539 5 934 376 94 11 55 chr3 45859559 45859651 -113740132 + B1_Mus2 SINE Alu 1 90 -224 5 934 1600 251 46 36 chr3 45859662 45859788 -113739995 - Lx6 LINE L1 -583 6877 6756 5 934 587 98 11 0 chr3 45859788 45859880 -113739903 + (TCTA)n Simple_repeat Simple_repeat 3 95 0 5 934 1600 251 46 36 chr3 45859880 45860166 -113739617 - Lx6 LINE L1 -705 6755 6461 5 934 2014 263 17 56 chr3 45860170 45860591 -113739192 - Lx7 LINE L1 -1419 6277 5874 5 934 324 0 0 0 chr3 45860591 45860627 -113739156 + (TA)n Simple_repeat Simple_repeat 2 37 0 5 934 8072 218 125 17 chr3 45860627 45863157 -113736626 - Lx7 LINE L1 -9 5871 3067 5 934 23019 125 19 13 chr3 45863179 45867596 -113732187 - L1Md_F LINE L1 -1059 4824 380 5 934 423 188 3 0 chr3 45867621 45867713 -113732070 - Lx7 LINE L1 -840 3074 2981 5 934 4379 250 87 48 chr3 45867711 45869858 -113729925 - L1_Mur3 LINE L1 -2069 3811 1581 5 934 1249 54 45 70 chr3 45869862 45870062 -113729721 - B2_Mm2 SINE B2 0 195 1 5 934 8280 32 2 0 chr3 45870073 45871663 -113728120 - L1Md_T LINE L1 -2 6580 4987 5 934 2315 258 80 61 chr3 45871659 45873047 -113726736 - L1_Mur3 LINE L1 -4291 1586 18 5 934 327 85 0 0 chr3 45873047 45873094 -113726689 + (TG)n Simple_repeat Simple_repeat 2 48 0 5 934 2232 276 79 100 chr3 45873094 45873177 -113726606 - L1_Mur3 LINE L1 -7550 178 110 5 934 25 31 0 0 chr3 45873204 45873236 -113726547 + AT_rich Low_complexity Low_complexity 1 32 0 5 934 21 82 0 0 chr3 45873783 45873832 -113725951 + AT_rich Low_complexity Low_complexity 1 49 0 5 934 24 32 0 0 chr3 45874623 45874654 -113725129 + AT_rich Low_complexity Low_complexity 1 31 0 5 934 240 111 0 0 chr3 45874870 45874906 -113724877 + (T)n Simple_repeat Simple_repeat 1 36 0 5 116 1361 271 22 3 chr3 45874987 45875298 -113724485 + Lx6 LINE L1 7092 7408 -52 5 935 381 22 0 0 chr3 45875302 45875348 -113724435 + (TG)n Simple_repeat Simple_repeat 2 47 0 5 935 1093 109 15 75 chr3 45875844 45876043 -113723740 + Lx LINE L1 6309 6495 -159 5 935 1083 300 112 29 chr3 45876043 45876525 -113723258 - RMER1C Other Other -449 893 182 5 935 433 263 88 0 chr3 45876539 45876653 -113723130 - RMER1C Other Other -779 563 440 5 935 201 94 0 0 chr3 45876716 45876748 -113723035 + (TTG)n Simple_repeat Simple_repeat 2 33 0 5 935 1248 312 81 24 chr3 45876761 45877299 -113722484 - Lx5 LINE L1 -46 7414 6466 5 935 2404 282 56 34 chr3 45877683 45878648 -113721135 + L1_Rod LINE L1 496 1550 -4297 5 935 2942 238 52 25 chr3 45878648 45879435 -113720348 + Lx9 LINE L1 6757 7571 -73 5 935 2527 121 44 3 chr3 45879435 45879824 -113719959 - RLTR44A LTR ERVK 0 405 1 5 935 2942 238 52 25 chr3 45879824 45879900 -113719883 + Lx9 LINE L1 7572 7643 -1 5 935 1564 187 12 102 chr3 45879935 45880269 -113719514 - ORR1B1 LTR MaLR -51 343 40 5 935 392 126 50 8 chr3 45880277 45880397 -113719386 + (TA)n Simple_repeat Simple_repeat 2 126 0 5 935 597 284 111 20 chr3 45880720 45880964 -113718819 - RMER15 LTR ERVL 0 575 310 5 935 23 0 0 0 chr3 45881276 45881299 -113718484 + AT_rich Low_complexity Low_complexity 1 23 0 5 935 332 326 38 64 chr3 45883227 45883384 -113716399 - HAL1-3A_ME LINE L1 -421 2437 2285 5 935 324 120 0 0 chr3 45883425 45883475 -113716308 + (T)n Simple_repeat Simple_repeat 1 50 0 5 935 1152 75 0 0 chr3 45883491 45883638 -113716145 - B1_Mus2 SINE Alu 0 147 1 5 935 262 321 12 0 chr3 45883638 45883719 -113716064 - ID_B1 SINE B4 -42 182 101 5 935 246 303 0 13 chr3 45883738 45883815 -113715968 - ID4_ SINE ID -6 77 2 5 935 266 0 0 29 chr3 45883822 45883857 -113715926 + (TAAA)n Simple_repeat Simple_repeat 4 37 0 5 935 1904 31 5 0 chr3 45883924 45884148 -113715635 - L1Md_F3 LINE L1 -242 6340 6116 5 935 1871 26 17 13 chr3 45884148 45884384 -113715399 + L1Md_F3 LINE L1 6344 6580 -4 5 935 1975 95 18 0 chr3 45884645 45884929 -113714854 - L1Md_T LINE L1 0 6582 6294 5 935 1794 316 45 9 chr3 45885355 45886044 -113713739 + Lx7 LINE L1 6594 7307 -389 5 935 210 150 0 0 chr3 45886064 45886104 -113713679 + (TATG)n Simple_repeat Simple_repeat 2 41 0 5 935 4813 93 1 0 chr3 45886266 45886929 -113712854 + L1_Mus1 LINE L1 5901 6564 -3 5 935 23 33 0 0 chr3 45886929 45886959 -113712824 + AT_rich Low_complexity Low_complexity 1 30 0 5 935 28 29 0 0 chr3 45887113 45887148 -113712635 + AT_rich Low_complexity Low_complexity 1 35 0 5 935 199 320 19 67 chr3 45887396 45887500 -113712283 + MIR3 SINE MIR 90 188 -20 5 935 683 240 45 52 chr3 45888383 45888596 -113711187 - L1_Mur3 LINE L1 -850 5030 4828 5 935 191 36 36 0 chr3 45888596 45888624 -113711159 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 5 935 683 232 581 24 chr3 45888624 45888740 -113711043 - L1_Mur3 LINE L1 -1053 4827 4639 5 935 195 42 0 0 chr3 45888928 45888952 -113710831 + (CAT)n Simple_repeat Simple_repeat 2 25 0 5 935 5821 217 27 17 chr3 45888953 45890655 -113709128 - Lx2B LINE L1 -18 6982 5260 5 935 432 0 0 0 chr3 45890655 45890703 -113709080 + (GTTTG)n Simple_repeat Simple_repeat 2 49 0 5 935 3353 192 23 8 chr3 45890703 45890759 -113709024 - Lx2B LINE L1 -618 5259 5204 5 935 337 258 123 46 chr3 45890760 45890890 -113708893 + B4A SINE B4 105 244 -48 5 935 6595 155 39 4 chr3 45891001 45892155 -113707628 + Lx2 LINE L1 5804 6997 0 5 935 207 0 0 0 chr3 45893451 45893474 -113706309 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 5 935 832 79 0 0 chr3 45893474 45893588 -113706195 - B1_Mus1 SINE Alu -8 140 27 5 935 6191 117 15 4 chr3 45893620 45894638 -113705145 - MusHAL1 LINE L1 -627 2085 1057 5 935 10689 92 3 8 chr3 45894636 45896794 -113702989 + L1_Mus1 LINE L1 4420 6567 0 5 935 606 75 0 0 chr3 45898867 45898960 -113700823 + (TG)n Simple_repeat Simple_repeat 2 94 0 5 935 37685 47 0 3 chr3 45899180 45905686 -113694097 - L1Md_T LINE L1 0 6585 1 5 935 245 246 46 138 chr3 45906405 45906622 -113693161 + Lx9 LINE L1 5896 6092 -1552 5 935 1451 271 52 10 chr3 45906916 45907323 -113692460 + Lx9 LINE L1 6397 6820 -824 5 935 262 132 0 0 chr3 45907481 45907519 -113692264 - Lx3_Mus LINE L1 -887 4999 4962 5 935 9246 113 82 75 chr3 45907519 45907829 -113691954 + Lx3_Mus LINE L1 4991 5326 -1683 5 935 241 301 28 70 chr3 45907829 45907972 -113691811 + LTR32 LTR ERVL 34 170 -301 5 935 9246 113 82 75 chr3 45907972 45909513 -113690270 + Lx3_Mus LINE L1 5327 7001 -8 5 935 30 0 0 0 chr3 45909550 45909580 -113690203 + AT_rich Low_complexity Low_complexity 1 30 0 5 935 4055 150 135 16 chr3 45911706 45912375 -113687408 - L1_Mur1 LINE L1 -281 5605 4929 6 935 2806 133 29 14 chr3 45912375 45912857 -113686926 - L1_Mus3 LINE L1 -1 6637 6149 6 935 4055 150 135 16 chr3 45912857 45913037 -113686746 - L1_Mur1 LINE L1 -958 4928 4657 6 935 33135 94 7 8 chr3 45913052 45919137 -113680646 - L1Md_F2 LINE L1 -11 6571 498 6 935 17837 152 21 16 chr3 45919139 45921759 -113678024 - L1VL1 LINE L1 -1309 4574 1961 6 935 3398 25 5 0 chr3 45921759 45922153 -113677630 - MTA_Mm LTR MaLR 0 396 1 6 935 17837 152 21 16 chr3 45922153 45922706 -113677077 - L1VL1 LINE L1 -3923 1960 1388 6 935 3908 96 2 18 chr3 45922706 45923279 -113676504 - L1Md_F2 LINE L1 -2 6580 6017 6 935 17837 134 172 2 chr3 45923279 45924070 -113675713 - L1VL1 LINE L1 -4496 1387 459 6 935 452 339 41 36 chr3 45924073 45924269 -113675514 - B3 SINE B2 -15 201 5 6 935 234 205 0 0 chr3 45924307 45924385 -113675398 + (TA)n Simple_repeat Simple_repeat 2 79 0 6 935 189 0 0 0 chr3 45924392 45924413 -113675370 + (TG)n Simple_repeat Simple_repeat 2 22 0 6 935 28 0 0 0 chr3 45924946 45924974 -113674809 + AT_rich Low_complexity Low_complexity 1 28 0 6 935 324 0 0 0 chr3 45924989 45925025 -113674758 + (TG)n Simple_repeat Simple_repeat 2 37 0 6 935 231 289 117 58 chr3 45925048 45925151 -113674632 - B4 SINE B4 0 292 184 6 935 219 167 0 0 chr3 45925224 45925266 -113674517 + T-rich Low_complexity Low_complexity 1 42 0 6 935 5218 263 54 12 chr3 45925386 45926782 -113673001 - Lx5 LINE L1 -2 7048 5594 6 935 809 177 17 0 chr3 45926769 45926944 -113672839 + L1_Mur2 LINE L1 5169 5346 -531 6 935 637 193 211 0 chr3 45926939 45927110 -113672673 - Lx5 LINE L1 -697 5180 4974 6 935 1101 102 0 0 chr3 45927576 45927723 -113672060 + B1_Mus2 SINE Alu 1 147 0 6 935 345 14 0 100 chr3 45927724 45927804 -113671979 + (TAAAA)n Simple_repeat Simple_repeat 4 75 0 6 935 689 276 52 0 chr3 45928797 45928971 -113670812 - B3 SINE B2 -29 187 5 6 935 317 403 32 16 chr3 45930042 45930231 -113669552 - ORR1E LTR MaLR -167 192 1 6 935 21 57 0 0 chr3 45930441 45930476 -113669307 + AT_rich Low_complexity Low_complexity 1 35 0 6 935 322 359 6 6 chr3 45930487 45930658 -113669125 + Lx8 LINE L1 7176 7346 -127 6 935 21 57 0 0 chr3 45930761 45930796 -113668987 + AT_rich Low_complexity Low_complexity 1 35 0 6 935 331 376 31 19 chr3 45931329 45931489 -113668294 + RSINE1 SINE B4 4 165 0 6 935 213 39 0 0 chr3 45932488 45932514 -113667269 + (TATG)n Simple_repeat Simple_repeat 1 26 0 6 935 231 240 0 0 chr3 45932708 45932758 -113667025 + L1MEf LINE L1 960 1009 -5191 6 935 5166 105 19 29 chr3 45933324 45934120 -113665663 + RLTR13C2 LTR ERVK 1 788 -20 6 935 3793 213 34 10 chr3 45934147 45935184 -113664599 - Lx6 LINE L1 -1344 6116 5047 6 935 453 291 101 32 chr3 45935723 45935940 -113663843 + MER76 LTR ERVL 460 691 0 6 935 203 116 47 0 chr3 45936429 45936472 -113663311 + A-rich Low_complexity Low_complexity 5 49 0 6 935 2448 202 58 20 chr3 45937605 45938160 -113661623 + RLTR20B3 LTR ERVK 1 576 -1 6 935 216 0 0 0 chr3 45938719 45938743 -113661040 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 6 935 39 60 0 39 chr3 45939040 45939144 -113660639 + AT_rich Low_complexity Low_complexity 1 100 0 6 935 2439 196 11 21 chr3 45939154 45939681 -113660102 - Lx LINE L1 -2 6652 6131 6 935 1926 153 12 0 chr3 45939681 45940027 -113659756 + L1_Mus4 LINE L1 5301 5652 -984 6 935 431 329 42 29 chr3 45940356 45940597 -113659186 + Lx7 LINE L1 5832 6075 -1621 6 935 875 294 79 7 chr3 45940641 45940946 -113658837 + Lx7 LINE L1 6159 6485 -1211 6 935 414 0 0 0 chr3 45941041 45941087 -113658696 + (GA)n Simple_repeat Simple_repeat 2 47 0 6 935 411 56 0 0 chr3 45941087 45941140 -113658643 + (TATG)n Simple_repeat Simple_repeat 4 57 0 6 935 241 276 35 0 chr3 45941152 45941210 -113658573 - ID4_ SINE ID -23 60 1 6 935 505 251 148 28 chr3 45941225 45941401 -113658382 + B3A SINE B2 2 198 0 6 935 536 253 6 93 chr3 45942144 45942305 -113657478 - B1_Mur1 SINE Alu -2 147 1 6 935 21 36 0 0 chr3 45942562 45942590 -113657193 + AT_rich Low_complexity Low_complexity 1 28 0 6 935 263 287 11 11 chr3 45943269 45943357 -113656426 + CT-rich Low_complexity Low_complexity 2 89 0 6 935 334 227 51 51 chr3 45943369 45943448 -113656335 - ID SINE ID -145 79 1 6 935 21 0 0 0 chr3 45944181 45944202 -113655581 + AT_rich Low_complexity Low_complexity 1 21 0 6 935 531 132 33 36 chr3 45944720 45944857 -113654926 + L1_Mur2 LINE L1 5236 5379 -507 6 935 38737 16 0 35 chr3 45944847 45951057 -113648726 + Lx LINE L1 1 5586 -297 6 935 8953 5 0 0 chr3 45951057 45952053 -113647730 + L1Md_A LINE L1 5587 6582 0 6 935 38737 79 2 21 chr3 45952053 45953354 -113646429 + Lx LINE L1 5587 6653 -1 6 935 27 29 0 0 chr3 45953688 45953722 -113646061 + AT_rich Low_complexity Low_complexity 1 34 0 6 935 546 124 0 0 chr3 45954115 45954204 -113645579 + (CA)n Simple_repeat Simple_repeat 2 90 0 6 935 424 330 83 68 chr3 45954284 45954609 -113645174 + MER31A LTR ERV1 15 344 -122 6 935 362 67 0 51 chr3 45954943 45955022 -113644761 + (TTTTG)n Simple_repeat Simple_repeat 2 76 0 6 935 261 98 0 0 chr3 45955991 45956032 -113643751 + (TG)n Simple_repeat Simple_repeat 2 42 0 6 935 4336 188 10 6 chr3 45956410 45957218 -113642565 - Lx LINE L1 -60 6594 5784 6 935 293 19 18 53 chr3 45957220 45957277 -113642506 + (TTTTTG)n Simple_repeat Simple_repeat 5 59 0 6 935 764 148 0 5 chr3 45957277 45957399 -113642384 - B1_Mus1 SINE Alu 0 148 33 6 935 9208 192 8 3 chr3 45957399 45959176 -113640607 - L1_Mm LINE L1 -87 5796 4012 6 935 915 161 37 0 chr3 45959181 45959342 -113640441 - L1VL4 LINE L1 -6108 194 28 6 935 208 298 0 0 chr3 45960920 45960997 -113638786 + polypyrimidine Low_complexity Low_complexity 1 77 0 6 935 490 312 50 31 chr3 45961028 45961187 -113638596 - ID_B1 SINE B4 -53 171 10 6 935 393 22 0 0 chr3 45961546 45961592 -113638191 + (TTTG)n Simple_repeat Simple_repeat 2 47 0 6 935 879 79 0 0 chr3 45961592 45961706 -113638077 - B1_Mm SINE Alu -8 139 26 6 935 297 262 0 121 chr3 45961630 45961721 -113638062 - MT2B LTR ERVL -345 256 177 6 935 21 71 0 0 chr3 45962710 45962752 -113637031 + AT_rich Low_complexity Low_complexity 1 42 0 6 935 2926 226 32 18 chr3 45963327 45964449 -113635334 + L1_Mur2 LINE L1 879 2074 -3803 6 935 1009 97 7 0 chr3 45964460 45964604 -113635179 - L1_Mus3 LINE L1 -503 6135 5991 6 935 219 36 0 0 chr3 45964644 45964672 -113635111 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 6 935 297 225 0 123 chr3 45964679 45964760 -113635023 + B4 SINE B4 82 152 -140 6 935 444 115 0 37 chr3 45964696 45964777 -113635006 + B1_Mus1 SINE Alu 7 84 -64 6 935 248 0 0 30 chr3 45964787 45964820 -113634963 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 6 935 1795 97 43 0 chr3 45964832 45965089 -113634694 - L1_Mus3 LINE L1 -700 5938 5671 6 935 3113 111 45 0 chr3 45965089 45965558 -113634225 + L1_Mus3 LINE L1 6142 6631 -7 6 935 1723 229 38 48 chr3 45965747 45966271 -113633512 + L1_Mur2 LINE L1 2124 2642 -3235 6 935 10217 136 97 84 chr3 45966262 45969131 -113630652 + L1_Mm LINE L1 2173 5478 -408 6 935 1825 160 115 23 chr3 45969131 45969566 -113630217 + IAPLTR2_Mm LTR ERVK 1 475 0 6 935 9408 176 272 9 chr3 45969566 45969681 -113630102 + L1_Mm LINE L1 5479 5588 -298 6 935 7215 89 1 7 chr3 45969682 45970683 -113629100 + L1Md_F2 LINE L1 5587 6581 -1 6 935 3329 206 124 26 chr3 45970692 45971717 -113628066 + L1_Mur2 LINE L1 2776 3900 -1977 6 935 1151 246 62 45 chr3 45971731 45972088 -113627695 + Lx5 LINE L1 5866 6228 -822 6 935 797 238 28 42 chr3 45972224 45972439 -113627344 + Lx5 LINE L1 6230 6441 -609 6 935 3349 271 92 13 chr3 45972435 45973433 -113626350 + Lx5 LINE L1 5971 7047 -3 6 935 3501 112 65 44 chr3 45975501 45976088 -113623695 - L1_Mus2 LINE L1 -1 6565 5967 6 935 3914 78 25 1 chr3 45976088 45976735 -113623048 + L1_Mus2 LINE L1 5320 5978 -588 6 935 419 137 38 29 chr3 45976989 45977094 -113622689 - Lx LINE L1 0 6654 6549 6 935 387 0 0 0 chr3 45977094 45977137 -113622646 + (T)n Simple_repeat Simple_repeat 1 43 0 6 935 1147 76 0 0 chr3 45977147 45977292 -113622491 - B1_Mus2 SINE Alu 0 147 3 6 935 497 167 98 0 chr3 45977293 45977395 -113622388 - Lx LINE L1 -93 6561 6450 6 935 28 29 0 0 chr3 45977802 45977837 -113621946 + AT_rich Low_complexity Low_complexity 1 35 0 6 935 540 273 16 0 chr3 45977901 45978029 -113621754 + ID_B1 SINE B4 90 219 -5 6 935 362 321 9 9 chr3 45978198 45978305 -113621478 - PB1D10 SINE Alu -10 107 1 6 935 430 248 40 24 chr3 45978766 45978835 -113620948 + ZP3AR Satellite Satellite 28 97 -115 6 935 312 229 29 0 chr3 45978835 45978905 -113620878 + ID4_ SINE ID 3 74 -9 6 935 430 248 40 24 chr3 45978905 45978959 -113620824 + ZP3AR Satellite Satellite 98 153 -59 6 935 3464 163 57 12 chr3 45979221 45979868 -113619915 - Lx4A LINE L1 -1 7057 6382 6 935 8289 160 22 23 chr3 45979868 45981742 -113618041 - Lx4A LINE L1 -830 6228 4354 6 935 796 238 0 11 chr3 45981751 45981934 -113617849 - Lx4B LINE L1 -3 7055 6875 6 935 1017 93 0 14 chr3 45981948 45982090 -113617693 - B1_Mm SINE Alu -7 140 1 6 935 2344 175 35 2 chr3 45982091 45982526 -113617257 - Lx4B LINE L1 -365 6693 6245 6 935 1405 180 8 4 chr3 45982524 45982781 -113617002 + L1_Mur2 LINE L1 4731 4988 -889 6 935 224 100 25 0 chr3 45983166 45983206 -113616577 + (TA)n Simple_repeat Simple_repeat 2 42 0 6 935 24 32 0 0 chr3 45983314 45983345 -113616438 + AT_rich Low_complexity Low_complexity 1 31 0 6 935 297 268 38 20 chr3 45984875 45985014 -113614769 + MLT1A0 LTR MaLR 1 143 -231 6 935 211 279 0 61 chr3 45985126 45985225 -113614558 + T-rich Low_complexity Low_complexity 2 94 0 6 935 283 360 53 69 chr3 45986032 45986351 -113613432 - RLTR25A LTR ERVK -789 314 1 6 935 300 208 31 10 chr3 45988051 45988141 -113611642 + (TA)n Simple_repeat Simple_repeat 2 93 0 6 935 180 111 0 0 chr3 45988141 45988168 -113611615 + (CA)n Simple_repeat Simple_repeat 2 28 0 6 935 300 208 31 10 chr3 45988168 45988174 -113611609 + (TA)n Simple_repeat Simple_repeat 2 7 0 6 935 23 54 0 0 chr3 45988466 45988503 -113611280 + AT_rich Low_complexity Low_complexity 1 37 0 6 935 21 57 0 0 chr3 45988566 45988601 -113611182 + AT_rich Low_complexity Low_complexity 1 35 0 6 935 387 73 0 0 chr3 45988605 45988660 -113611123 + (TA)n Simple_repeat Simple_repeat 2 56 0 6 935 297 0 0 0 chr3 45988968 45989001 -113610782 + (CA)n Simple_repeat Simple_repeat 2 34 0 7 935 666 280 35 0 chr3 45989146 45989346 -113610437 - L1M6 LINE L1 -6288 208 2 7 935 187 103 25 25 chr3 45989946 45989986 -113609797 + A-rich Low_complexity Low_complexity 5 44 0 7 935 372 315 90 11 chr3 45990835 45991201 -113608582 + L1M5 LINE L1 4193 4587 -1559 7 935 477 338 135 63 chr3 45991558 45991937 -113607846 - MTE-int LTR MaLR -69 1511 1106 7 935 207 242 0 0 chr3 45992164 45992226 -113607557 + (CATATA)n Simple_repeat Simple_repeat 2 63 0 7 935 505 321 88 31 chr3 45992616 45992844 -113606939 + MTD LTR MaLR 49 289 -130 7 935 235 250 54 0 chr3 45992884 45992940 -113606843 + MTD LTR MaLR 295 353 -6 7 935 248 133 66 16 chr3 45992973 45993034 -113606749 + A-rich Low_complexity Low_complexity 5 68 0 7 935 484 107 68 0 chr3 45993898 45994001 -113605782 - Lx9 LINE L1 0 7644 7535 7 935 494 285 0 7 chr3 45994091 45994229 -113605554 + Lx9 LINE L1 7046 7182 -462 7 935 442 172 22 33 chr3 45994448 45994538 -113605245 - Lx9 LINE L1 -587 7057 6969 7 935 510 335 0 49 chr3 45995509 45995672 -113604111 + B3A SINE B2 34 188 -10 7 935 21 0 0 0 chr3 45995968 45995989 -113603794 + AT_rich Low_complexity Low_complexity 1 21 0 7 935 614 229 203 11 chr3 45996030 45996207 -113603576 - B3 SINE B2 -5 211 1 7 935 846 205 41 119 chr3 45996234 45996395 -113603388 - Lx5 LINE L1 -1 7049 6882 7 935 324 0 0 0 chr3 45996395 45996431 -113603352 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 7 935 1197 54 0 0 chr3 45996432 45996580 -113603203 + B1_Mus1 SINE Alu 1 148 0 7 935 846 205 41 119 chr3 45996580 45996660 -113603123 - Lx5 LINE L1 -169 6881 6825 7 935 3553 215 57 7 chr3 45996640 45996913 -113602870 + Lx4B LINE L1 5991 6284 -774 7 935 1044 99 0 0 chr3 45996913 45997064 -113602719 + (CTTTG)n Simple_repeat Simple_repeat 2 152 0 7 935 3553 215 57 7 chr3 45997064 45997597 -113602186 + Lx4B LINE L1 6285 6837 -221 7 935 632 13 13 0 chr3 45997605 45997682 -113602101 + (TC)n Simple_repeat Simple_repeat 1 78 0 7 935 1999 177 40 22 chr3 45997729 45998134 -113601649 - Lx3B LINE L1 -1 6972 6561 7 935 2576 144 55 5 chr3 45998139 45998577 -113601206 + Lx3B LINE L1 6096 6555 -418 7 935 26 0 0 0 chr3 45999120 45999146 -113600637 + AT_rich Low_complexity Low_complexity 1 26 0 7 935 309 194 135 31 chr3 45999400 45999496 -113600287 - Lx7 LINE L1 0 7696 7591 7 935 262 353 73 53 chr3 46000231 46000644 -113599139 - ERVL-B4-int LTR ERVL -1135 4579 4159 1 935 324 0 0 0 chr3 46000678 46000714 -113599069 + (CA)n Simple_repeat Simple_repeat 1 36 0 2 935 234 0 0 0 chr3 46000727 46000753 -113599030 + (TATG)n Simple_repeat Simple_repeat 2 27 0 3 935 2768 108 7 2 chr3 46000919 46001335 -113598448 + L1_Mus3 LINE L1 6215 6632 -6 4 935 5419 163 45 24 chr3 46001395 46002426 -113597357 - Lx2 LINE L1 -3 6994 5943 5 116 35313 35 0 0 chr3 46002503 46008138 -113591645 + L1Md_T LINE L1 1 5589 -297 6 936 8990 5 0 0 chr3 46008138 46009134 -113590649 + L1Md_T LINE L1 5590 6585 0 6 936 543 214 184 58 chr3 46010888 46011181 -113588602 + Lx9 LINE L1 7309 7638 -6 7 936 2795 210 46 22 chr3 46011312 46011990 -113587793 + L1VL4 LINE L1 197 890 -5412 8 936 2186 122 219 26 chr3 46011992 46012453 -113587330 - RLTR6_Mm LTR ERV1 -68 586 37 9 936 926 83 0 0 chr3 46012563 46012708 -113587075 + MusHAL1 LINE L1 45 189 -2523 1 936 16943 192 25 68 chr3 46012708 46015520 -113584263 + Lx LINE L1 1909 4790 -1093 1 936 1137 80 11 11 chr3 46015520 46015696 -113584087 + (GGAGAA)n Simple_repeat Simple_repeat 3 178 0 1 936 16943 168 21 38 chr3 46015696 46017721 -113582062 + Lx LINE L1 4791 6577 -77 1 936 1018 160 6 6 chr3 46017720 46017902 -113581881 - Lx LINE L1 -272 6382 6201 1 936 516 32 0 0 chr3 46018103 46018165 -113581618 + (CA)n Simple_repeat Simple_repeat 1 62 0 1 936 230 353 109 23 chr3 46018222 46018396 -113581387 - Lx8 LINE L1 -252 7221 7033 1 936 226 262 16 16 chr3 46018420 46018482 -113581301 - Lx9 LINE L1 -516 7128 7067 1 936 1391 296 34 7 chr3 46018502 46018938 -113580845 + Lx9 LINE L1 6602 7049 -595 1 936 1118 82 7 0 chr3 46019284 46019430 -113580353 - B1_Mm SINE Alu 0 147 1 1 936 1172 209 73 3 chr3 46019715 46020056 -113579727 - Lx9 LINE L1 -2 7642 7278 1 936 1125 170 14 0 chr3 46020582 46020805 -113578978 - Lx2 LINE L1 -803 6194 5969 2 936 650 122 0 0 chr3 46020798 46020896 -113578887 - Lx2 LINE L1 -1131 5866 5769 2 936 4245 161 20 5 chr3 46020896 46021648 -113578135 + Lx2 LINE L1 6233 6995 -2 2 936 261 0 0 0 chr3 46023238 46023267 -113576516 + (T)n Simple_repeat Simple_repeat 1 29 0 2 936 1869 132 9 51 chr3 46023330 46023666 -113576117 + RLTRETN_Mm LTR ERVK 1 322 0 2 936 4115 64 3 50 chr3 46023667 46024261 -113575522 + MMETn-int LTR ERVK 2 567 -4277 2 936 23 54 0 0 chr3 46024486 46024523 -113575260 + AT_rich Low_complexity Low_complexity 1 37 0 2 936 5440 227 84 18 chr3 46024523 46026700 -113573083 - Lx5 LINE L1 -3 7047 4710 2 936 4644 243 201 9 chr3 46026722 46026733 -113573050 - Lx5 LINE L1 -2392 3494 3487 2 936 207 0 0 0 chr3 46026733 46026756 -113573027 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2 936 4644 243 194 8 chr3 46026756 46028983 -113570800 - Lx5 LINE L1 -2400 3486 816 2 936 246 413 64 6 chr3 46029639 46029795 -113569988 + B3 SINE B2 6 170 -46 2 936 495 33 0 0 chr3 46029820 46029881 -113569902 + (TG)n Simple_repeat Simple_repeat 2 62 0 2 936 356 225 35 35 chr3 46030007 46030122 -113569661 + Lx7 LINE L1 7574 7688 -8 2 936 37 23 0 0 chr3 46030298 46030342 -113569441 + AT_rich Low_complexity Low_complexity 1 44 0 3 936 258 95 0 0 chr3 46030909 46030951 -113568832 + (GA)n Simple_repeat Simple_repeat 1 42 0 3 936 527 90 69 0 chr3 46030996 46031140 -113568643 + (TAGA)n Simple_repeat Simple_repeat 3 156 0 3 936 22 70 0 0 chr3 46031619 46031662 -113568121 + AT_rich Low_complexity Low_complexity 1 43 0 3 936 2409 104 26 11 chr3 46032015 46032392 -113567391 + L1_Mus3 LINE L1 6249 6631 -7 3 936 35 0 0 0 chr3 46033856 46033891 -113565892 + AT_rich Low_complexity Low_complexity 1 35 0 3 936 351 0 0 0 chr3 46034273 46034312 -113565471 + (TG)n Simple_repeat Simple_repeat 2 40 0 3 936 478 341 49 42 chr3 46034332 46034620 -113565163 - B4 SINE B4 0 292 3 3 936 441 318 20 7 chr3 46034889 46035038 -113564745 + Lx7 LINE L1 6952 7102 -594 3 936 1422 305 79 11 chr3 46035383 46036119 -113563664 - Lx5 LINE L1 -668 6792 5783 3 936 1121 75 0 0 chr3 46036152 46036299 -113563484 - B1_Mus2 SINE Alu 0 147 1 4 936 1110 307 55 45 chr3 46036348 46036901 -113562882 + Lx6 LINE L1 6496 7433 -27 4 936 414 0 0 0 chr3 46036968 46037014 -113562769 + (GA)n Simple_repeat Simple_repeat 2 47 0 4 936 5303 91 0 3 chr3 46037658 46038400 -113561383 - L1Md_F2 LINE L1 -942 4941 4202 4 936 5986 97 63 0 chr3 46038394 46038674 -113561109 + L1Md_F2 LINE L1 4935 5232 -651 4 936 573 15 0 0 chr3 46038674 46038740 -113561043 + (TA)n Simple_repeat Simple_repeat 2 67 0 4 936 5986 78 22 2 chr3 46038740 46039716 -113560067 + L1Md_F2 LINE L1 5233 6246 -336 4 936 927 177 221 69 chr3 46039716 46040160 -113559623 - RLTR6_Mm LTR ERV1 -16 431 1 4 936 2005 103 48 10 chr3 46040160 46040473 -113559310 + L1Md_F2 LINE L1 6246 6570 -12 4 936 346 360 123 9 chr3 46040694 46040921 -113558862 - LTR50 LTR ERVL -537 258 6 4 936 21 36 0 0 chr3 46041187 46041215 -113558568 + AT_rich Low_complexity Low_complexity 1 28 0 4 936 3371 156 53 0 chr3 46041260 46041826 -113557957 + L1Md_F2 LINE L1 366 961 -5655 4 936 36635 29 2 7 chr3 46041818 46047020 -113552763 + L1Md_T LINE L1 415 5585 -298 5 936 8251 42 0 0 chr3 46047021 46048017 -113551766 + L1Md_T LINE L1 5587 6582 0 5 936 30310 94 8 3 chr3 46048017 46049011 -113550772 + L1Md_F2 LINE L1 966 1966 -3917 4 936 188 35 35 0 chr3 46049011 46049040 -113550743 + (CAAAA)n Simple_repeat Simple_repeat 3 32 0 5 936 30310 90 11 5 chr3 46049040 46051650 -113548133 + L1Md_F2 LINE L1 1967 4566 -1317 4 936 6951 29 1 23 chr3 46051650 46052490 -113547293 - RLTR13B2 LTR ERVK 0 822 1 5 936 30310 90 11 5 chr3 46052490 46052554 -113547229 + L1Md_F2 LINE L1 4567 4627 -1256 4 936 234 81 0 0 chr3 46052554 46052591 -113547192 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 5 936 30310 90 11 5 chr3 46052591 46053513 -113546270 + L1Md_F2 LINE L1 4628 5585 -298 4 936 6945 82 33 4 chr3 46053514 46054466 -113545317 + L1Md_F2 LINE L1 5588 6566 -16 4 936 654 273 201 9 chr3 46054527 46054845 -113544938 + MTEb LTR MaLR 1 379 0 5 936 2852 88 23 3 chr3 46055431 46055817 -113543966 + MTA_Mm LTR MaLR 3 396 0 5 936 601 280 14 64 chr3 46056340 46056553 -113543230 - MTD LTR MaLR -4 415 198 5 936 1261 138 5 0 chr3 46056555 46056758 -113543025 - Lx LINE L1 0 6654 6451 5 936 27 49 0 0 chr3 46057401 46057442 -113542341 + AT_rich Low_complexity Low_complexity 1 41 0 5 936 36 100 0 0 chr3 46057465 46057585 -113542198 + AT_rich Low_complexity Low_complexity 1 120 0 5 936 28 0 0 0 chr3 46058273 46058301 -113541482 + AT_rich Low_complexity Low_complexity 1 28 0 6 936 4602 175 79 11 chr3 46058843 46059803 -113539980 - Lx3C LINE L1 0 6976 5952 6 936 222 125 52 35 chr3 46059892 46059950 -113539833 + A-rich Low_complexity Low_complexity 2 60 0 6 936 1029 78 32 7 chr3 46060913 46061068 -113538715 - L1_Mus1 LINE L1 0 6567 6409 6 936 488 121 20 0 chr3 46062249 46062348 -113537435 + (TCTCTG)n Simple_repeat Simple_repeat 2 102 0 6 936 186 208 0 0 chr3 46062354 46062402 -113537381 + CT-rich Low_complexity Low_complexity 6 53 0 6 936 525 329 74 53 chr3 46062800 46063179 -113536604 - Lx8 LINE L1 -258 7215 6829 6 936 873 161 34 63 chr3 46063159 46063364 -113536419 + Lx2A LINE L1 6774 6972 -36 6 936 456 79 0 13 chr3 46063366 46063443 -113536340 + Lx2A LINE L1 6929 7004 -4 6 936 264 233 0 0 chr3 46063474 46063534 -113536249 - Lx8 LINE L1 -636 6837 6778 6 936 1459 98 0 31 chr3 46063545 46063767 -113536016 - Lx LINE L1 -223 6431 6217 6 936 6710 33 4 0 chr3 46063863 46064693 -113535090 - L1Md_F2 LINE L1 0 6582 5789 7 936 459 306 81 0 chr3 46064808 46064994 -113534789 + B3 SINE B2 2 202 -14 7 936 5761 147 22 4 chr3 46065223 46066194 -113533589 - Lx2 LINE L1 -2 6995 6008 7 936 306 50 0 0 chr3 46066756 46066796 -113532987 + (TG)n Simple_repeat Simple_repeat 1 40 0 7 936 577 286 14 14 chr3 46066801 46066947 -113532836 - RSINE1 SINE B4 -13 152 6 7 936 465 19 0 0 chr3 46067001 46067055 -113532728 + (TTA)n Simple_repeat Simple_repeat 1 54 0 7 936 287 127 0 0 chr3 46067055 46067104 -113532679 - L1_Mus4 LINE L1 -27 6609 6561 7 936 4209 111 15 81 chr3 46067147 46067935 -113531848 - RMER17A LTR ERVK -15 736 1 7 936 225 0 0 0 chr3 46068269 46068294 -113531489 + (A)n Simple_repeat Simple_repeat 1 25 0 7 936 325 325 73 0 chr3 46068406 46068529 -113531254 - B1F1 SINE Alu -17 132 1 7 936 21 0 0 0 chr3 46069277 46069298 -113530485 + AT_rich Low_complexity Low_complexity 1 21 0 8 936 419 165 0 12 chr3 46069329 46069415 -113530368 + (TTCA)n Simple_repeat Simple_repeat 4 88 0 8 936 1594 112 8 16 chr3 46069865 46070118 -113529665 - Lx LINE L1 -641 6013 5763 8 936 3317 147 26 2 chr3 46070087 46070666 -113529117 - L1_Mur1 LINE L1 -1757 4129 3537 8 936 22 35 0 0 chr3 46070684 46070713 -113529070 + AT_rich Low_complexity Low_complexity 1 29 0 8 936 24 32 0 0 chr3 46071493 46071524 -113528259 + AT_rich Low_complexity Low_complexity 1 31 0 8 936 3745 30 0 0 chr3 46072428 46072868 -113526915 + L1Md_A LINE L1 6142 6581 -1 8 936 351 0 0 0 chr3 46073808 46073847 -113525936 + (TA)n Simple_repeat Simple_repeat 1 39 0 8 936 302 203 0 17 chr3 46073847 46073907 -113525876 + HAL1-3A_ME LINE L1 1975 2033 -825 8 936 257 184 11 65 chr3 46075293 46075386 -113524397 + (CAAA)n Simple_repeat Simple_repeat 2 89 0 8 936 480 270 103 30 chr3 46075459 46075692 -113524091 + L1MC4 LINE L1 980 1229 -4986 9 936 255 170 0 0 chr3 46075708 46075755 -113524028 + GA-rich Low_complexity Low_complexity 3 49 0 9 936 943 108 22 17 chr3 46075755 46075934 -113523849 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 9 936 519 17 0 0 chr3 46075934 46075994 -113523789 + (GGAA)n Simple_repeat Simple_repeat 1 60 0 9 936 371 359 0 0 chr3 46076657 46076788 -113522995 + (TG)n Simple_repeat Simple_repeat 2 132 0 9 936 1524 304 52 24 chr3 46077627 46078169 -113521614 - Lx7 LINE L1 0 7460 6904 9 936 1005 107 0 0 chr3 46078169 46078318 -113521465 + (TTTC)n Simple_repeat Simple_repeat 4 152 0 9 936 222 184 0 0 chr3 46078318 46078356 -113521427 + CT-rich Low_complexity Low_complexity 2 39 0 9 936 33087 79 4 11 chr3 46078357 46083537 -113516246 - L1Md_F2 LINE L1 0 6582 1442 9 936 1334 57 91 0 chr3 46083537 46083555 -113516228 - B2_Mm1t SINE B2 0 193 176 9 936 189 0 0 0 chr3 46083555 46083576 -113516207 + (TTTA)n Simple_repeat Simple_repeat 1 21 0 1 936 1334 57 91 0 chr3 46083576 46083733 -113516050 - B2_Mm1t SINE B2 -18 175 3 9 936 33087 100 2 3 chr3 46083733 46084670 -113515113 - L1Md_F2 LINE L1 -4442 1441 503 9 936 878 28 9 0 chr3 46084702 46084811 -113514972 + (TTTC)n Simple_repeat Simple_repeat 2 111 0 1 936 3074 91 10 47 chr3 46084814 46085300 -113514483 - L1_Mus3 LINE L1 -9 6629 6162 1 936 405 0 0 0 chr3 46085322 46085367 -113514416 + (TC)n Simple_repeat Simple_repeat 2 46 0 1 936 334 108 13 13 chr3 46085367 46085441 -113514342 + (TG)n Simple_repeat Simple_repeat 2 76 0 1 936 2961 264 103 21 chr3 46085464 46087114 -113512669 - Lx7 LINE L1 -819 6877 5101 9 936 878 167 113 46 chr3 46087110 46087348 -113512435 - Lx7 LINE L1 -1275 4605 4352 9 936 318 301 77 37 chr3 46087358 46087546 -113512237 + RMER15 LTR ERVL 96 352 -223 1 936 240 346 112 8 chr3 46087560 46087694 -113512089 + RMER15 LTR ERVL 392 539 -36 1 936 21 36 0 0 chr3 46087805 46087833 -113511950 + AT_rich Low_complexity Low_complexity 1 28 0 1 936 22 0 0 0 chr3 46089218 46089240 -113510543 + AT_rich Low_complexity Low_complexity 1 22 0 1 936 312 270 33 11 chr3 46089939 46090029 -113509754 + L1M2 LINE L1 4969 5060 -1083 1 936 845 121 79 0 chr3 46090201 46090341 -113509442 + L1_Mm LINE L1 5312 5462 -421 1 936 514 147 0 18 chr3 46090342 46090453 -113509330 + Lx LINE L1 6546 6654 0 1 936 225 259 0 0 chr3 46090700 46090754 -113509029 + GA-rich Low_complexity Low_complexity 2 55 0 1 936 2291 110 33 5 chr3 46090849 46091216 -113508567 - L1_Mus3 LINE L1 -6 6632 6256 1 936 2120 189 64 91 chr3 46091216 46091744 -113508039 + RMER16 LTR ERVK 1 514 -19 1 936 473 52 0 0 chr3 46091750 46091808 -113507975 - L1_Mus4 LINE L1 -375 6261 6204 1 936 408 353 0 15 chr3 46092229 46092364 -113507419 - ID_B1 SINE B4 -8 216 84 1 936 1292 215 0 79 chr3 46092530 46092848 -113506935 - Lx2B LINE L1 0 7000 6708 1 936 333 82 0 0 chr3 46093230 46093279 -113506504 + (A)n Simple_repeat Simple_repeat 1 49 0 1 936 2807 314 60 35 chr3 46094280 46096269 -113503514 + RMER1A Other Other 1 1016 -14 1 936 21 0 0 0 chr3 46096375 46096396 -113503387 + AT_rich Low_complexity Low_complexity 1 21 0 1 936 37 39 0 0 chr3 46096565 46096616 -113503167 + AT_rich Low_complexity Low_complexity 1 51 0 1 936 21 0 0 0 chr3 46097900 46097921 -113501862 + AT_rich Low_complexity Low_complexity 1 21 0 1 936 402 228 0 0 chr3 46098164 46098265 -113501518 + CT-rich Low_complexity Low_complexity 2 102 0 1 936 1816 213 21 58 chr3 46099393 46099933 -113499850 + Lx6 LINE L1 5401 5929 -1531 1 936 959 103 0 0 chr3 46099933 46100069 -113499714 + B1_Mm SINE Alu 10 145 -2 1 936 519 17 0 0 chr3 46100070 46100130 -113499653 + (CAA)n Simple_repeat Simple_repeat 1 60 0 1 936 1329 302 109 37 chr3 46100133 46101252 -113498531 + Lx6 LINE L1 5935 7434 -26 1 936 1133 88 0 0 chr3 46101921 46102068 -113497715 - B1_Mus2 SINE Alu 0 147 1 1 936 1360 289 76 38 chr3 46102187 46102986 -113496797 - L1_Mur3 LINE L1 -1322 4558 3729 1 936 207 0 0 0 chr3 46104407 46104430 -113495353 + (TA)n Simple_repeat Simple_repeat 2 24 0 1 936 555 370 17 96 chr3 46105270 46105572 -113494211 + B4A SINE B4 13 290 -2 1 936 387 0 0 0 chr3 46106985 46107028 -113492755 + (CA)n Simple_repeat Simple_repeat 1 43 0 1 936 21 0 0 0 chr3 46107869 46107890 -113491893 + AT_rich Low_complexity Low_complexity 1 21 0 1 936 585 319 31 26 chr3 46108464 46108657 -113491126 + ID_B1 SINE B4 2 195 -29 1 936 317 62 0 20 chr3 46108752 46108801 -113490982 + (TAGA)n Simple_repeat Simple_repeat 4 51 0 1 936 623 80 36 0 chr3 46108848 46108960 -113490823 + (TAGA)n Simple_repeat Simple_repeat 2 117 0 1 936 493 375 24 44 chr3 46109657 46109908 -113489875 - 7SK RNA RNA -82 249 4 1 936 222 279 28 42 chr3 46110166 46110237 -113489546 + ID4_ SINE ID 11 80 -3 1 936 8476 31 0 0 chr3 46110357 46111353 -113488430 + L1Md_T LINE L1 5587 6582 0 1 936 22 56 0 0 chr3 46111514 46111550 -113488233 + AT_rich Low_complexity Low_complexity 1 36 0 1 936 233 253 25 25 chr3 46112094 46112175 -113487608 - L1_Mur3 LINE L1 -1175 4702 4622 1 936 526 174 62 37 chr3 46112187 46112348 -113487435 - L1_Mur3 LINE L1 -1212 4665 4501 1 936 609 129 0 0 chr3 46112339 46112432 -113487351 - L1_Mur2 LINE L1 -947 4930 4838 1 936 501 17 0 0 chr3 46112506 46112564 -113487219 + (GA)n Simple_repeat Simple_repeat 2 59 0 1 936 8960 11 0 0 chr3 46112695 46114409 -113485374 - L1Md_T LINE L1 0 6582 4869 1 936 222 37 0 0 chr3 46114409 46114436 -113485347 + (A)n Simple_repeat Simple_repeat 1 27 0 1 936 30 45 0 0 chr3 46114582 46114626 -113485157 + AT_rich Low_complexity Low_complexity 1 44 0 1 936 294 29 0 0 chr3 46114709 46114744 -113485039 + (A)n Simple_repeat Simple_repeat 1 35 0 1 936 2593 140 96 17 chr3 46114750 46115231 -113484552 + Lx2 LINE L1 6455 6981 -16 1 936 739 326 69 19 chr3 46115630 46116093 -113483690 + Lx9 LINE L1 7008 7493 -151 1 936 273 75 0 0 chr3 46116109 46116149 -113483634 + (CA)n Simple_repeat Simple_repeat 1 40 0 1 936 209 133 0 91 chr3 46116623 46116689 -113483094 + A-rich Low_complexity Low_complexity 6 65 0 1 936 265 373 52 29 chr3 46117726 46117900 -113481883 + Charlie2a DNA MER1_type 145 322 -2539 1 936 424 338 52 22 chr3 46117936 46118208 -113481575 + Charlie2a DNA MER1_type 1897 2176 -685 1 936 353 348 20 107 chr3 46118279 46118480 -113481303 + B3A SINE B2 27 208 -8 1 936 1188 68 0 0 chr3 46118485 46118632 -113481151 + B1_Mus1 SINE Alu 2 148 0 1 936 27 62 0 0 chr3 46118632 46118680 -113481103 + AT_rich Low_complexity Low_complexity 1 48 0 1 936 3344 134 57 0 chr3 46119430 46119973 -113479810 + Lx2 LINE L1 6423 6996 -1 1 936 227 290 14 14 chr3 46119986 46120056 -113479727 - RMER15 LTR ERVL -79 496 427 1 936 30 59 0 0 chr3 46120819 46120870 -113478913 + AT_rich Low_complexity Low_complexity 1 51 0 1 936 213 204 23 0 chr3 46122505 46122549 -113477234 - B1F SINE Alu -5 144 100 1 936 23 0 0 0 chr3 46122958 46122981 -113476802 + AT_rich Low_complexity Low_complexity 1 23 0 1 936 311 266 119 0 chr3 46123977 46124086 -113475697 + RLTR23 LTR ERV1 3 124 -306 1 936 1402 25 0 0 chr3 46124143 46124305 -113475478 - L1Md_F3 LINE L1 -437 6147 5986 1 936 3819 35 4 0 chr3 46124305 46124758 -113475025 + L1Md_F3 LINE L1 6130 6584 0 1 936 406 250 87 92 chr3 46124823 46125030 -113474753 + RLTR23 LTR ERV1 225 430 0 1 936 526 199 11 11 chr3 46125253 46125369 -113474414 + Lx2B LINE L1 6596 6710 -348 1 936 1749 206 13 114 chr3 46125370 46125995 -113473788 + L1_Mur3 LINE L1 4899 5460 -420 1 936 1563 89 0 78 chr3 46126235 46126478 -113473305 - L1_Mus2 LINE L1 -1 6565 6342 1 936 408 109 0 0 chr3 46126478 46126542 -113473241 + L1_Mus2 LINE L1 6007 6070 -496 1 936 321 26 0 0 chr3 46128379 46128417 -113471366 + (TG)n Simple_repeat Simple_repeat 1 38 0 1 936 240 35 0 0 chr3 46130412 46130441 -113469342 + (TTTAG)n Simple_repeat Simple_repeat 1 29 0 1 936 23 54 0 0 chr3 46131525 46131562 -113468221 + AT_rich Low_complexity Low_complexity 1 37 0 1 936 6965 146 6 4 chr3 46131851 46133510 -113466273 + L1_Mus4 LINE L1 4971 6633 -3 1 936 454 183 0 0 chr3 46134165 46134247 -113465536 + B1_Mus2 SINE Alu 57 138 -9 1 936 468 51 0 0 chr3 46134253 46134312 -113465471 + (TG)n Simple_repeat Simple_repeat 2 60 0 1 936 2789 208 58 47 chr3 46134553 46135117 -113464666 + L1_Mur2 LINE L1 4293 4860 -1017 1 936 414 0 0 0 chr3 46135117 46135163 -113464620 + (TAA)n Simple_repeat Simple_repeat 3 48 0 1 936 2789 208 58 47 chr3 46135163 46135370 -113464413 + L1_Mur2 LINE L1 4861 5072 -805 1 936 1426 187 77 31 chr3 46136091 46136501 -113463282 + RMER6A LTR ERVK 277 680 -76 1 936 627 78 0 0 chr3 46136511 46136601 -113463182 + (TG)n Simple_repeat Simple_repeat 2 91 0 1 936 252 0 0 0 chr3 46136604 46136632 -113463151 + (TA)n Simple_repeat Simple_repeat 2 29 0 1 14 1642 229 53 44 chr3 46136967 46137492 -113462291 + RLTR20B2 LTR ERVK 28 557 -3 1 937 260 362 9 0 chr3 46137692 46137797 -113461986 - B3A SINE B2 -74 124 19 1 937 234 0 0 0 chr3 46137797 46137823 -113461960 + (CTAA)n Simple_repeat Simple_repeat 3 28 0 1 937 351 0 0 0 chr3 46137823 46137862 -113461921 + (TC)n Simple_repeat Simple_repeat 1 39 0 1 937 183 156 0 0 chr3 46139118 46139150 -113460633 + GA-rich Low_complexity Low_complexity 2 33 0 1 937 561 15 0 0 chr3 46139809 46139875 -113459908 + (CA)n Simple_repeat Simple_repeat 2 67 0 1 937 788 312 83 23 chr3 46139878 46140262 -113459521 - Lx7 LINE L1 -390 7306 6900 1 937 408 134 25 51 chr3 46140507 46140625 -113459158 + (TATATG)n Simple_repeat Simple_repeat 5 119 0 1 937 180 111 0 0 chr3 46141329 46141356 -113458427 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 1 937 3424 23 2 2 chr3 46142214 46142610 -113457173 + MTA_Mm LTR MaLR 1 396 0 1 937 9546 18 2 0 chr3 46142610 46143706 -113456077 + MTA_Mm-int LTR MaLR 1 1098 0 1 937 3424 23 2 2 chr3 46143706 46144102 -113455681 + MTA_Mm LTR MaLR 1 396 0 1 937 207 0 0 0 chr3 46144839 46144862 -113454921 + (T)n Simple_repeat Simple_repeat 1 23 0 1 937 333 118 0 0 chr3 46145526 46145577 -113454206 + (GGA)n Simple_repeat Simple_repeat 3 53 0 1 937 3924 211 76 48 chr3 46145577 46146601 -113453182 + Lx2A LINE L1 5956 7008 0 1 937 1608 165 41 98 chr3 46146620 46146989 -113452794 + Lx2A LINE L1 6661 7008 0 1 937 671 246 139 0 chr3 46147531 46147718 -113452065 - B3 SINE B2 0 216 4 1 937 521 348 103 13 chr3 46148858 46149091 -113450692 + B4A SINE B4 29 282 -10 1 937 209 33 0 32 chr3 46149136 46149167 -113450616 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 1 937 329 308 33 11 chr3 46149318 46149410 -113450373 + B4A SINE B4 25 118 -174 1 937 258 32 0 0 chr3 46149561 46149592 -113450191 + (CA)n Simple_repeat Simple_repeat 1 31 0 1 937 624 280 141 4 chr3 46149935 46150197 -113449586 - RMER20B LTR ERVK -217 410 113 1 937 1738 84 0 15 chr3 46150327 46150708 -113449075 + L1VL4 LINE L1 1071 1424 -2490 1 937 4916 38 0 0 chr3 46150705 46151373 -113448410 - L1Md_F2 LINE L1 -627 5955 5288 1 937 5170 48 2 2 chr3 46151373 46152014 -113447769 + L1Md_F2 LINE L1 5940 6580 -2 1 937 4848 133 37 28 chr3 46152023 46153006 -113446777 + L1VL4 LINE L1 1401 2392 -1522 1 937 8889 141 9 2 chr3 46153005 46155310 -113444473 + L1_Mus3 LINE L1 4314 6637 -1 1 937 9075 182 20 16 chr3 46155312 46157196 -113442587 + L1_Mur1 LINE L1 2400 4290 -1596 1 937 1048 151 6 6 chr3 46157211 46157391 -113442392 + MTB LTR MaLR 221 400 0 1 937 964 172 0 11 chr3 46157391 46157579 -113442204 + Lx LINE L1 6463 6648 -6 2 937 232 345 0 44 chr3 46157669 46157760 -113442023 - RMER20B LTR ERVK -519 108 22 1 937 1261 238 137 98 chr3 46158161 46158599 -113441184 + MT2A LTR ERVL 1 455 -78 2 937 729 34 0 0 chr3 46158629 46158717 -113441066 + (CA)n Simple_repeat Simple_repeat 1 88 0 2 937 693 351 94 28 chr3 46158766 46159343 -113440440 + Lx8 LINE L1 6395 7009 -464 2 937 287 364 39 13 chr3 46159649 46159802 -113439981 + RMER15 LTR ERVL 406 562 -13 2 937 633 118 0 0 chr3 46159822 46159941 -113439842 + (CA)n Simple_repeat Simple_repeat 2 120 0 2 937 626 293 29 19 chr3 46160229 46160438 -113439345 + ID_B1 SINE B4 2 212 -12 2 937 514 197 16 0 chr3 46160438 46160560 -113439223 + CT-rich Low_complexity Low_complexity 3 126 0 2 937 696 336 46 43 chr3 46160691 46161042 -113438741 - MLT1B LTR MaLR -38 352 1 2 937 6760 149 15 12 chr3 46161475 46163061 -113436722 - Lx LINE L1 -7 6647 5043 2 937 1782 203 0 31 chr3 46163068 46163460 -113436323 + L1_Mur2 LINE L1 4614 4993 -884 2 937 216 97 0 0 chr3 46163875 46163906 -113435877 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 2 937 264 30 0 0 chr3 46164283 46164316 -113435467 + (CAGAGA)n Simple_repeat Simple_repeat 2 34 0 2 937 215 31 31 0 chr3 46164847 46164879 -113434904 + (CAAAAA)n Simple_repeat Simple_repeat 2 34 0 2 937 432 257 0 10 chr3 46164899 46165001 -113434782 + B3 SINE B2 59 159 -57 2 937 241 352 57 8 chr3 46165008 46165131 -113434652 - B4A SINE B4 -55 237 109 2 937 3429 201 57 1 chr3 46165371 46166078 -113433705 + L1_Mur2 LINE L1 582 1327 -5759 2 937 7328 151 53 78 chr3 46166059 46166317 -113433466 + L1_Mur2 LINE L1 1824 2060 -3817 2 937 369 0 0 0 chr3 46166317 46166358 -113433425 + (CA)n Simple_repeat Simple_repeat 1 41 0 2 937 10840 181 135 70 chr3 46166358 46167130 -113432653 + L1_Mur2 LINE L1 2061 2885 -2992 2 937 1022 140 0 6 chr3 46167130 46167310 -113432473 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 2 937 10840 181 135 70 chr3 46167310 46168630 -113431153 + L1_Mur2 LINE L1 2886 4216 -1661 2 937 387 41 0 0 chr3 46168630 46168679 -113431104 + (TG)n Simple_repeat Simple_repeat 2 50 0 2 937 10840 181 135 70 chr3 46168679 46168706 -113431077 + L1_Mur2 LINE L1 4217 4256 -1621 2 937 247 343 43 0 chr3 46168706 46168776 -113431007 - RSINE1 SINE B4 -36 129 57 2 937 10840 181 135 70 chr3 46168776 46168886 -113430897 + L1_Mur2 LINE L1 4257 4424 -1453 2 937 483 48 0 0 chr3 46168886 46168948 -113430835 + (TTCC)n Simple_repeat Simple_repeat 1 62 0 2 937 10840 181 135 70 chr3 46168948 46169646 -113430137 + L1_Mur2 LINE L1 4425 5294 -583 2 937 2025 101 3 7 chr3 46169865 46170165 -113429618 - L1_Mm LINE L1 -756 5127 4829 2 937 3121 64 25 25 chr3 46170165 46170599 -113429184 + L1_Mus1 LINE L1 6133 6566 -1 2 937 22 0 0 0 chr3 46170778 46170800 -113428983 + AT_rich Low_complexity Low_complexity 1 22 0 2 937 24 32 0 0 chr3 46171045 46171076 -113428707 + AT_rich Low_complexity Low_complexity 1 31 0 2 937 262 352 9 0 chr3 46172116 46172221 -113427562 + CT-rich Low_complexity Low_complexity 2 107 0 2 937 405 0 0 0 chr3 46172365 46172410 -113427373 + (A)n Simple_repeat Simple_repeat 1 45 0 2 937 260 197 0 57 chr3 46172645 46172715 -113427068 - MLT1A1 LTR MaLR -12 396 331 2 937 306 0 0 0 chr3 46172975 46173009 -113426774 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 2 937 208 239 0 80 chr3 46173097 46173197 -113426586 + A-rich Low_complexity Low_complexity 1 92 0 2 937 417 342 73 5 chr3 46173339 46173559 -113426224 + Lx8 LINE L1 7146 7380 -93 2 937 25 31 0 0 chr3 46173778 46173810 -113425973 + AT_rich Low_complexity Low_complexity 1 32 0 2 937 230 342 40 86 chr3 46174583 46174781 -113425002 - RLTR25B LTR ERVK -821 207 19 2 937 31 88 0 0 chr3 46174799 46174879 -113424904 + AT_rich Low_complexity Low_complexity 1 80 0 2 937 554 362 50 15 chr3 46175025 46175224 -113424559 + B4 SINE B4 1 206 -86 2 937 638 346 75 23 chr3 46175236 46175759 -113424024 + Lx8 LINE L1 6922 7471 -2 2 937 492 86 0 0 chr3 46175805 46175875 -113423908 + (CA)n Simple_repeat Simple_repeat 1 70 0 2 937 182 312 62 0 chr3 46176583 46176647 -113423136 - L2 LINE L2 -561 2858 2791 2 937 477 341 8 0 chr3 46176734 46176866 -113422917 + RSINE1 SINE B4 2 134 -31 2 937 21 57 0 0 chr3 46176883 46176918 -113422865 + AT_rich Low_complexity Low_complexity 1 35 0 2 937 893 242 0 5 chr3 46177307 46177519 -113422264 + Lx2B LINE L1 6073 6283 -717 2 937 3280 56 69 11 chr3 46177519 46177566 -113422217 - MT2C_Mm LTR ERVL 0 475 431 2 937 7926 32 1 8 chr3 46177566 46178502 -113421281 - RLTR13B3 LTR ERVK 0 929 1 2 937 3280 56 69 11 chr3 46178502 46178902 -113420881 - MT2C_Mm LTR ERVL -45 430 2 2 937 2318 256 43 55 chr3 46178903 46179629 -113420154 + Lx2B LINE L1 6279 6995 -5 2 937 586 360 15 24 chr3 46179662 46179867 -113419916 - B3 SINE B2 -12 204 2 2 937 232 222 0 45 chr3 46180187 46180253 -113419530 + (CAGAGA)n Simple_repeat Simple_repeat 4 66 0 2 937 2736 56 14 0 chr3 46181436 46181795 -113417988 - L1Md_F2 LINE L1 -1 6581 6218 2 937 26767 138 52 22 chr3 46182635 46188767 -113411016 - L1_Mus2 LINE L1 -1 6565 247 2 937 6257 149 25 11 chr3 46189090 46190200 -113409583 + Lx LINE L1 5529 6654 0 2 937 26 30 0 0 chr3 46191002 46191035 -113408748 + AT_rich Low_complexity Low_complexity 1 33 0 2 937 1453 256 66 4 chr3 46191647 46192102 -113407681 + Lx7 LINE L1 5863 6345 -1351 2 937 204 97 0 0 chr3 46192156 46192187 -113407596 + (TCTG)n Simple_repeat Simple_repeat 2 32 0 2 937 473 300 18 13 chr3 46192586 46192816 -113406967 - L1M2 LINE L1 -1291 4852 4645 2 937 756 364 81 18 chr3 46193341 46193786 -113405997 + MER82 DNA MER2_type 158 630 -23 2 937 248 137 0 19 chr3 46193919 46193971 -113405812 + GA-rich Low_complexity Low_complexity 3 53 0 2 937 242 348 11 11 chr3 46194060 46194153 -113405630 - MTC LTR MaLR -14 407 315 2 937 753 133 33 7 chr3 46194726 46194877 -113404906 + (CATATA)n Simple_repeat Simple_repeat 5 159 0 2 937 23 68 0 0 chr3 46194978 46195022 -113404761 + AT_rich Low_complexity Low_complexity 1 44 0 2 937 22 35 0 0 chr3 46195076 46195105 -113404678 + AT_rich Low_complexity Low_complexity 1 29 0 2 937 243 204 0 0 chr3 46195506 46195560 -113404223 + CT-rich Low_complexity Low_complexity 2 55 0 2 937 390 263 31 10 chr3 46195563 46195659 -113404124 - B4 SINE B4 -3 289 192 2 937 23 0 0 0 chr3 46196185 46196208 -113403575 + AT_rich Low_complexity Low_complexity 1 23 0 2 937 192 191 36 0 chr3 46196208 46196292 -113403491 + (TA)n Simple_repeat Simple_repeat 2 88 0 2 937 218 210 37 12 chr3 46196294 46196376 -113403407 + (TATAA)n Simple_repeat Simple_repeat 3 86 0 2 937 204 97 0 0 chr3 46196379 46196410 -113403373 + (TATG)n Simple_repeat Simple_repeat 2 32 0 2 937 27 29 0 0 chr3 46196418 46196452 -113403331 + AT_rich Low_complexity Low_complexity 1 34 0 2 937 35 0 0 0 chr3 46196653 46196688 -113403095 + AT_rich Low_complexity Low_complexity 1 35 0 2 937 186 43 0 0 chr3 46197735 46197758 -113402025 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2 937 5882 51 6 0 chr3 46197768 46198493 -113401290 - L1Md_F2 LINE L1 -12 6570 5842 2 937 2162 63 0 0 chr3 46198493 46198764 -113401019 + L1Md_F2 LINE L1 5551 5821 -62 2 937 1075 88 0 7 chr3 46198768 46198916 -113400867 - B1_Mus1 SINE Alu 0 148 2 2 937 1146 80 0 6 chr3 46198931 46199095 -113400688 - L1_Mus1 LINE L1 0 6567 6405 2 937 5700 149 35 4 chr3 46199136 46200588 -113399195 - Lx LINE L1 -100 6554 5060 2 937 183 42 0 0 chr3 46200595 46200619 -113399164 + (CAA)n Simple_repeat Simple_repeat 2 25 0 2 937 354 159 64 10 chr3 46200807 46201016 -113398767 + (TCTA)n Simple_repeat Simple_repeat 1 220 0 2 937 352 368 53 11 chr3 46201178 46201365 -113398418 - Lx8 LINE L1 -594 7102 6908 2 937 276 77 0 0 chr3 46201371 46201410 -113398373 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 2 937 1025 116 0 7 chr3 46201415 46201562 -113398221 - B1_Mus1 SINE Alu 0 148 3 2 937 389 346 44 2 chr3 46201588 46201838 -113397945 - Lx8 LINE L1 -577 6896 6629 2 937 48 53 0 0 chr3 46202070 46202146 -113397637 + AT_rich Low_complexity Low_complexity 1 76 0 2 937 1065 94 21 32 chr3 46202247 46202434 -113397349 + L1_Mus4 LINE L1 6446 6630 -6 2 937 854 216 72 5 chr3 46203370 46203579 -113396204 - URR1B DNA MER1_type 0 225 3 2 937 340 294 87 0 chr3 46203680 46203772 -113396011 + PB1D9 SINE Alu 9 108 -12 2 937 420 171 66 0 chr3 46203949 46204025 -113395758 + MTC LTR MaLR 1 81 -340 2 937 518 311 158 0 chr3 46204091 46204313 -113395470 + Lx6 LINE L1 7144 7400 -60 2 937 233 226 38 0 chr3 46204313 46204366 -113395417 + GA-rich Low_complexity Low_complexity 2 56 0 2 937 1224 225 114 0 chr3 46204366 46204664 -113395119 + MTC LTR MaLR 82 413 -8 2 937 203 0 37 0 chr3 46205580 46205607 -113394176 + (TAGA)n Simple_repeat Simple_repeat 2 29 0 2 937 21 0 0 0 chr3 46206557 46206578 -113393205 + AT_rich Low_complexity Low_complexity 1 21 0 2 937 576 160 0 0 chr3 46207665 46207784 -113391999 + CT-rich Low_complexity Low_complexity 2 120 0 2 937 541 151 25 0 chr3 46207784 46207943 -113391840 + (TAGA)n Simple_repeat Simple_repeat 4 166 0 2 937 270 136 0 0 chr3 46207943 46207987 -113391796 + (CATATA)n Simple_repeat Simple_repeat 2 45 0 2 937 21 0 0 0 chr3 46208789 46208810 -113390973 + AT_rich Low_complexity Low_complexity 1 21 0 2 937 275 284 17 17 chr3 46209863 46209981 -113389802 - L1MCa LINE L1 -3365 3576 3459 2 937 251 258 157 37 chr3 46210410 46210627 -113389156 - L1MCa LINE L1 -3794 3147 2905 2 937 480 288 166 39 chr3 46211637 46212068 -113387715 - L1MCa LINE L1 -5436 1692 1119 2 937 21 0 0 0 chr3 46213009 46213030 -113386753 + AT_rich Low_complexity Low_complexity 1 21 0 2 937 21 36 0 0 chr3 46213765 46213793 -113385990 + AT_rich Low_complexity Low_complexity 1 28 0 2 937 21 0 0 0 chr3 46213867 46213888 -113385895 + AT_rich Low_complexity Low_complexity 1 21 0 2 937 983 160 0 0 chr3 46214152 46214327 -113385456 + Lx2 LINE L1 6823 6997 0 2 937 322 334 10 73 chr3 46214530 46214671 -113385112 + B3A SINE B2 63 198 -18 2 937 314 341 23 36 chr3 46215204 46215423 -113384360 - Lx8 LINE L1 -1008 6465 6250 2 937 21 71 0 0 chr3 46215464 46215506 -113384277 + AT_rich Low_complexity Low_complexity 1 42 0 2 937 7561 90 12 4 chr3 46215828 46217009 -113382774 - L1_Mus3 LINE L1 0 6638 5450 2 937 400 18 35 0 chr3 46217009 46217066 -113382717 + (TTTTG)n Simple_repeat Simple_repeat 2 60 0 2 937 3754 128 5 10 chr3 46217066 46217222 -113382561 - L1_Mus3 LINE L1 -434 5449 5298 2 937 579 148 40 16 chr3 46217211 46217335 -113382448 + L1_Mur2 LINE L1 5126 5252 -625 3 937 24 0 0 0 chr3 46218105 46218129 -113381654 + AT_rich Low_complexity Low_complexity 1 24 0 3 937 226 234 0 45 chr3 46218818 46218885 -113380898 - LTR37B LTR ERV1 -71 397 334 3 937 207 69 0 0 chr3 46218898 46218927 -113380856 + (TAA)n Simple_repeat Simple_repeat 2 30 0 3 937 1464 177 109 20 chr3 46219377 46219630 -113380153 + ORR1A2 LTR MaLR 6 290 -37 3 937 2861 46 0 0 chr3 46219630 46219976 -113379807 + ORR1A1 LTR MaLR 1 346 0 3 937 1464 177 109 20 chr3 46219976 46220016 -113379767 + ORR1A2 LTR MaLR 291 325 -2 3 937 316 271 75 17 chr3 46220064 46220184 -113379599 - RSINE1 SINE B4 -36 129 3 3 937 21 36 0 0 chr3 46220616 46220644 -113379139 + AT_rich Low_complexity Low_complexity 1 28 0 3 937 3631 166 50 58 chr3 46221117 46221857 -113377926 - Lx3C LINE L1 0 6976 6243 3 937 1414 266 42 126 chr3 46222355 46223082 -113376701 - RMER19C LTR ERVK -1 736 47 3 937 6398 172 21 2 chr3 46223100 46225036 -113374747 - Lx LINE L1 0 6654 4674 3 937 1570 151 25 0 chr3 46225043 46225321 -113374462 + L1_Mur2 LINE L1 4363 4647 -1230 3 937 406 175 40 30 chr3 46225321 46225421 -113374362 - RMER19C LTR ERVK -510 101 1 3 937 34 0 0 0 chr3 46225502 46225536 -113374247 + AT_rich Low_complexity Low_complexity 1 34 0 3 937 462 36 0 0 chr3 46225557 46225613 -113374170 + (TG)n Simple_repeat Simple_repeat 2 57 0 3 937 5521 134 3 14 chr3 46226328 46227198 -113372585 + Lx3A LINE L1 6114 6974 -7 3 937 21 0 0 0 chr3 46227198 46227219 -113372564 + AT_rich Low_complexity Low_complexity 1 21 0 3 937 195 204 0 0 chr3 46227364 46227413 -113372370 + (TG)n Simple_repeat Simple_repeat 1 49 0 3 937 345 145 0 0 chr3 46227417 46227479 -113372304 + (CA)n Simple_repeat Simple_repeat 1 62 0 3 937 536 372 89 28 chr3 46227519 46227878 -113371905 - LTR16C LTR ERVL -14 475 95 3 937 230 0 33 0 chr3 46228823 46228853 -113370930 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 3 937 396 256 0 0 chr3 46229143 46229237 -113370546 + MTC LTR MaLR 265 365 -56 3 937 329 145 0 13 chr3 46229239 46229316 -113370467 + (TTTA)n Simple_repeat Simple_repeat 1 76 0 3 937 263 254 0 16 chr3 46229317 46229381 -113370402 + MTC LTR MaLR 316 378 0 3 937 4842 119 118 50 chr3 46229718 46231141 -113368642 - L1_Mus3 LINE L1 0 6638 5120 3 937 344 153 94 31 chr3 46231135 46231263 -113368520 - Lx9 LINE L1 -1 7643 7508 3 937 383 360 41 58 chr3 46231737 46231979 -113367804 - B4A SINE B4 -47 245 8 3 937 470 286 93 44 chr3 46232100 46232305 -113367478 - ID_B1 SINE B4 -7 217 3 3 937 1963 172 22 33 chr3 46233149 46233510 -113366273 + MTC LTR MaLR 63 419 -2 3 937 2441 159 15 7 chr3 46234096 46234508 -113365275 + L1_Mm LINE L1 5317 5731 -152 3 937 1147 121 47 89 chr3 46234487 46234723 -113365060 + Lx LINE L1 6423 6648 -6 3 937 701 23 11 0 chr3 46234744 46234831 -113364952 + (GA)n Simple_repeat Simple_repeat 2 89 0 3 937 687 83 0 0 chr3 46236319 46236427 -113363356 + (GTTTG)n Simple_repeat Simple_repeat 2 109 0 3 937 1020 79 0 35 chr3 46236429 46236573 -113363210 - B1_Mur4 SINE Alu -11 139 1 3 937 668 12 0 12 chr3 46238688 46238770 -113361013 + (TCTA)n Simple_repeat Simple_repeat 4 84 0 3 937 321 26 0 0 chr3 46238962 46239000 -113360783 + (TCC)n Simple_repeat Simple_repeat 3 40 0 3 937 507 33 0 0 chr3 46239009 46239070 -113360713 + (TC)n Simple_repeat Simple_repeat 2 62 0 3 937 309 100 0 0 chr3 46239070 46239119 -113360664 + (TG)n Simple_repeat Simple_repeat 1 50 0 3 937 313 320 115 0 chr3 46239126 46239248 -113360535 - B3A SINE B2 -55 143 8 3 937 3577 82 0 37 chr3 46239993 46240512 -113359271 + L1_Mus2 LINE L1 6067 6566 0 3 937 21 0 0 0 chr3 46240832 46240853 -113358930 + AT_rich Low_complexity Low_complexity 1 21 0 3 937 314 208 168 40 chr3 46241585 46241690 -113358093 + Lx4B LINE L1 6918 7039 -19 3 937 330 67 0 0 chr3 46241690 46241735 -113358048 + (TAAA)n Simple_repeat Simple_repeat 4 48 0 3 937 314 208 168 40 chr3 46241735 46241754 -113358029 + Lx4B LINE L1 7040 7058 0 3 937 27 29 0 0 chr3 46242327 46242361 -113357422 + AT_rich Low_complexity Low_complexity 1 34 0 3 937 476 258 0 20 chr3 46242398 46242497 -113357286 - B1F SINE Alu -29 120 24 3 937 195 312 35 59 chr3 46242529 46242614 -113357169 + L4 LINE RTE 1338 1420 -609 3 937 504 0 0 0 chr3 46242825 46242881 -113356902 + (TG)n Simple_repeat Simple_repeat 1 56 0 3 937 324 0 0 0 chr3 46242881 46242916 -113356867 + (GA)n Simple_repeat Simple_repeat 1 36 0 3 937 26 0 0 0 chr3 46243163 46243189 -113356594 + AT_rich Low_complexity Low_complexity 1 26 0 3 937 1124 186 73 168 chr3 46243676 46244129 -113355654 + RMER17C LTR ERVK 1 410 0 3 937 429 57 43 0 chr3 46245414 46245484 -113354299 + L1Md_F3 LINE L1 6510 6582 -2 3 937 23 33 0 0 chr3 46245489 46245519 -113354264 + AT_rich Low_complexity Low_complexity 1 30 0 3 937 195 261 0 0 chr3 46247058 46247127 -113352656 + (CA)n Simple_repeat Simple_repeat 2 70 0 3 937 22 35 0 0 chr3 46248531 46248560 -113351223 + AT_rich Low_complexity Low_complexity 1 29 0 3 937 216 0 0 0 chr3 46249567 46249591 -113350192 + (A)n Simple_repeat Simple_repeat 1 24 0 3 937 275 269 62 31 chr3 46252691 46252787 -113346996 - MER5A1 DNA MER1_type -10 156 58 3 937 253 308 139 46 chr3 46253259 46253272 -113346511 + MER34A1 LTR ERV1 307 316 -271 3 937 207 0 0 0 chr3 46253272 46253295 -113346488 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 3 937 253 308 139 46 chr3 46253295 46253475 -113346308 + MER34A1 LTR ERV1 317 518 -69 3 937 4730 123 20 82 chr3 46253784 46254463 -113345320 - Lx2 LINE L1 -1 6996 6329 3 937 1048 112 0 0 chr3 46254463 46254606 -113345177 + B1_Mus2 SINE Alu 5 147 0 3 937 4730 123 20 82 chr3 46254606 46254776 -113345007 - Lx2 LINE L1 -669 6328 6200 3 937 4202 214 72 5 chr3 46254781 46254846 -113344937 - L1_Mur2 LINE L1 -2302 3575 3469 3 937 774 105 0 0 chr3 46254846 46254960 -113344823 + (TTTC)n Simple_repeat Simple_repeat 2 115 0 3 937 4202 214 72 5 chr3 46254960 46256019 -113343764 - L1_Mur2 LINE L1 -2409 3468 2377 3 937 2415 223 24 135 chr3 46256050 46256728 -113343055 + L1_Mur3 LINE L1 3870 4449 -1431 3 937 1158 122 0 0 chr3 46256728 46256908 -113342875 + (GGA)n Simple_repeat Simple_repeat 1 180 0 3 937 2415 223 24 135 chr3 46256908 46257156 -113342627 + L1_Mur3 LINE L1 4450 4693 -1187 3 937 1106 295 36 32 chr3 46257147 46257771 -113342012 + Lx5 LINE L1 6457 6886 -574 3 937 1021 215 273 26 chr3 46258016 46258701 -113341082 + RMER6C LTR ERVK 1 720 0 3 937 324 0 0 0 chr3 46261114 46261150 -113338633 + (GA)n Simple_repeat Simple_repeat 2 37 0 3 937 1418 192 86 5 chr3 46262266 46262637 -113337146 + L1_Mur2 LINE L1 2891 3291 -2586 3 937 294 188 0 0 chr3 46262637 46262733 -113337050 + GA-rich Low_complexity Low_complexity 1 96 0 3 937 883 176 0 83 chr3 46262735 46263001 -113336782 - RMER17C LTR ERVK -166 244 1 3 937 987 277 84 7 chr3 46263001 46263382 -113336401 + Lx5 LINE L1 6631 7047 -11 3 937 2511 199 50 58 chr3 46263393 46264243 -113335540 - Lx6 LINE L1 -1300 6160 5281 3 937 2406 187 8 10 chr3 46264576 46265078 -113334705 - Lx6 LINE L1 -1662 4218 3718 3 937 3272 25 20 7 chr3 46265078 46265484 -113334299 - IAPLTR2a LTR ERVK 0 411 1 3 937 13865 68 8 5 chr3 46265486 46267283 -113332500 - IAPEz-int LTR ERVK -2 6479 4678 3 937 1854 99 8 0 chr3 46267301 46267553 -113332230 - IAPEz-int LTR ERVK -5183 2497 2244 3 117 8862 78 55 85 chr3 46267548 46269144 -113330639 - IAPEz-int LTR ERVK -5004 1477 9 3 938 3098 34 59 5 chr3 46269145 46269535 -113330248 - IAPLTR2a LTR ERVK 0 411 1 3 938 303 248 10 0 chr3 46269536 46269637 -113330146 - Lx6 LINE L1 -2158 3722 3621 3 938 294 217 0 0 chr3 46269652 46269721 -113330062 - Lx6 LINE L1 -2685 3192 3124 3 938 531 138 0 0 chr3 46269728 46269815 -113329968 + (TTTC)n Simple_repeat Simple_repeat 4 90 0 3 938 1079 240 53 5 chr3 46269815 46270180 -113329603 - Lx6 LINE L1 -2728 3158 2773 3 938 415 248 95 24 chr3 46270183 46270381 -113329402 - Lx6 LINE L1 -4445 1432 1220 3 938 486 0 0 0 chr3 46270381 46270435 -113329348 + (TCTA)n Simple_repeat Simple_repeat 1 54 0 3 938 415 248 95 24 chr3 46270435 46270447 -113329336 - Lx6 LINE L1 -4658 1219 1208 3 938 492 242 56 52 chr3 46270445 46270493 -113329290 - Lx6 LINE L1 -6477 1251 1201 3 938 291 85 0 0 chr3 46270493 46270540 -113329243 + (TG)n Simple_repeat Simple_repeat 2 48 0 3 938 492 242 56 52 chr3 46270540 46270722 -113329061 - Lx6 LINE L1 -6528 1200 1021 3 938 902 244 91 0 chr3 46270721 46270996 -113328787 + Lx2B LINE L1 6028 6327 -673 3 938 32945 103 13 20 chr3 46271006 46277380 -113322403 - L1Md_F2 LINE L1 -5 6577 231 3 938 2753 218 58 15 chr3 46277382 46278035 -113321748 + Lx2B LINE L1 6315 6995 -5 3 938 949 323 135 24 chr3 46278031 46278705 -113321078 - Lx6 LINE L1 -6922 806 58 3 938 2023 212 26 43 chr3 46278847 46279384 -113320399 - L1_Mur3 LINE L1 -826 5054 4527 3 938 294 280 108 31 chr3 46279409 46279538 -113320245 + MT2A LTR ERVL 95 233 -300 3 938 308 309 144 0 chr3 46279523 46279620 -113320163 + MT2A LTR ERVL 347 457 -76 3 938 204 40 0 0 chr3 46280819 46280844 -113318939 + (TTTTTG)n Simple_repeat Simple_repeat 4 28 0 3 938 204 214 0 0 chr3 46280851 46280893 -113318890 + (TTTG)n Simple_repeat Simple_repeat 3 44 0 3 938 229 256 45 34 chr3 46281168 46281257 -113318526 - RMER15 LTR ERVL -485 90 1 3 938 348 94 0 0 chr3 46281484 46281537 -113318246 + (TC)n Simple_repeat Simple_repeat 2 54 0 3 938 2019 123 15 33 chr3 46282268 46282603 -113317180 - ORR1A4 LTR MaLR 0 329 1 3 938 1032 244 227 9 chr3 46282612 46282938 -113316845 - Lx9 LINE L1 -163 7481 7085 3 938 2680 237 34 33 chr3 46283505 46284165 -113315618 + RMER1C Other Other 554 1342 0 3 938 273 57 0 0 chr3 46285402 46285437 -113314346 + (TA)n Simple_repeat Simple_repeat 2 36 0 3 938 22 0 0 0 chr3 46285517 46285539 -113314244 + AT_rich Low_complexity Low_complexity 1 22 0 3 938 399 237 44 15 chr3 46286015 46286152 -113313631 - L1MC4 LINE L1 -453 7589 7449 3 938 360 0 0 0 chr3 46286761 46286801 -113312982 + (TA)n Simple_repeat Simple_repeat 2 41 0 3 938 24 91 0 0 chr3 46286830 46286896 -113312887 + AT_rich Low_complexity Low_complexity 1 66 0 3 938 2274 202 50 17 chr3 46289210 46289693 -113310090 + Lx2B LINE L1 6480 6978 -22 3 938 207 0 0 0 chr3 46289705 46289728 -113310055 + (CAAGC)n Simple_repeat Simple_repeat 2 24 0 3 938 1017 106 12 12 chr3 46289738 46289910 -113309873 + (GGAAA)n Simple_repeat Simple_repeat 1 172 0 3 938 396 133 67 0 chr3 46289912 46290017 -113309766 + GA-rich Low_complexity Low_complexity 4 115 0 3 938 1692 159 102 29 chr3 46290122 46290503 -113309280 + RLTR9E LTR ERVK 1 409 0 3 938 185 146 21 0 chr3 46290804 46290852 -113308931 + A-rich Low_complexity Low_complexity 2 50 0 3 938 1108 73 0 0 chr3 46290909 46291046 -113308737 - B1_Mm SINE Alu -9 138 2 3 938 1182 246 95 40 chr3 46291123 46291481 -113308302 + Lx7 LINE L1 6942 7318 -378 3 938 1894 75 0 8 chr3 46291481 46291736 -113308047 - L1_Mus1 LINE L1 0 6567 6315 3 938 1182 246 95 40 chr3 46291736 46291757 -113308026 + Lx7 LINE L1 7319 7342 -354 3 938 1081 208 68 59 chr3 46291857 46292194 -113307589 + Lx7 LINE L1 7357 7696 0 3 938 321 26 0 0 chr3 46293311 46293349 -113306434 + (TG)n Simple_repeat Simple_repeat 2 39 0 4 938 415 219 17 8 chr3 46293349 46293469 -113306314 + Lx9 LINE L1 7521 7641 -3 4 938 24 67 0 0 chr3 46295339 46295384 -113304399 + AT_rich Low_complexity Low_complexity 1 45 0 4 938 21 36 0 0 chr3 46295402 46295430 -113304353 + AT_rich Low_complexity Low_complexity 1 28 0 4 938 1475 278 32 7 chr3 46296565 46296974 -113302809 + MTD LTR MaLR 1 419 0 4 938 238 340 55 48 chr3 46297299 46297444 -113302339 + Tigger7 DNA MER2_type 79 224 -2267 4 938 1172 229 80 64 chr3 46297552 46297920 -113301863 - Lx5 LINE L1 -613 6437 6059 4 938 1743 243 40 106 chr3 46297920 46298574 -113301209 - RMER19C LTR ERVK 0 611 1 4 938 1172 229 80 64 chr3 46298574 46298593 -113301190 - Lx5 LINE L1 -992 6058 6044 4 938 919 214 317 0 chr3 46298584 46298874 -113300909 - Lx5 LINE L1 -35 5842 5461 4 938 243 0 0 0 chr3 46298943 46298970 -113300813 + (A)n Simple_repeat Simple_repeat 1 27 0 4 938 409 270 28 49 chr3 46298989 46299133 -113300650 + Tigger7 DNA MER2_type 341 481 -2010 4 938 288 331 34 0 chr3 46299118 46299266 -113300517 + Tigger7 DNA MER2_type 2241 2393 -98 4 938 1131 129 0 36 chr3 46299410 46299603 -113300180 + B2_Mm2 SINE B2 2 187 -8 4 938 701 43 244 34 chr3 46299803 46299922 -113299861 + B1_Mm SINE Alu 2 145 -2 4 938 1990 68 0 4 chr3 46301756 46302020 -113297763 + L1_Mus1 LINE L1 6304 6566 -1 4 938 24 0 0 0 chr3 46302849 46302873 -113296910 + AT_rich Low_complexity Low_complexity 1 24 0 4 938 288 0 0 0 chr3 46304472 46304504 -113295279 + (ATTG)n Simple_repeat Simple_repeat 2 33 0 4 938 234 0 0 0 chr3 46304629 46304655 -113295128 + (CAAAAA)n Simple_repeat Simple_repeat 2 27 0 4 938 321 252 123 26 chr3 46305076 46305190 -113294593 + Lx5 LINE L1 6545 6669 -381 4 938 375 82 27 14 chr3 46305256 46305330 -113294453 + (TAAA)n Simple_repeat Simple_repeat 2 76 0 4 938 352 316 48 79 chr3 46305374 46305563 -113294220 + ID_B1 SINE B4 32 214 -10 4 938 270 0 0 0 chr3 46305564 46305594 -113294189 + (TTAA)n Simple_repeat Simple_repeat 3 32 0 4 938 825 193 0 7 chr3 46305646 46305792 -113293991 - B1_Mus1 SINE Alu -1 147 3 4 938 5333 112 40 1 chr3 46305799 46306605 -113293178 - L1_Mus4 LINE L1 -5 6631 5795 4 938 23 33 0 0 chr3 46307289 46307319 -113292464 + AT_rich Low_complexity Low_complexity 1 30 0 4 938 26 0 0 0 chr3 46307396 46307422 -113292361 + AT_rich Low_complexity Low_complexity 1 26 0 4 938 458 410 6 11 chr3 46308741 46308921 -113290862 + MT2A LTR ERVL 245 423 -110 4 938 238 321 59 12 chr3 46309078 46309163 -113290620 + PB1D7 SINE Alu 24 112 -8 4 938 189 107 0 0 chr3 46309171 46309199 -113290584 + (CAAA)n Simple_repeat Simple_repeat 4 31 0 4 938 322 234 120 74 chr3 46309390 46309565 -113290218 - MTEb LTR MaLR 0 379 197 4 938 219 103 0 0 chr3 46309611 46309650 -113290133 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 4 938 3099 74 10 2 chr3 46309664 46310082 -113289701 + BGLII LTR ERVK 1 421 0 4 938 536 360 40 9 chr3 46310131 46310358 -113289425 - MTE-int LTR MaLR -1295 285 52 4 938 228 222 37 0 chr3 46310808 46310862 -113288921 - Lx8 LINE L1 -181 7292 7237 4 938 386 238 236 11 chr3 46311792 46311966 -113287817 + B3 SINE B2 2 214 -2 4 938 279 0 0 0 chr3 46312063 46312094 -113287689 + (TAA)n Simple_repeat Simple_repeat 3 33 0 4 938 21 36 0 0 chr3 46312869 46312897 -113286886 + AT_rich Low_complexity Low_complexity 1 28 0 4 938 24 53 0 0 chr3 46313330 46313368 -113286415 + AT_rich Low_complexity Low_complexity 1 38 0 4 938 255 61 0 0 chr3 46313664 46313697 -113286086 + (A)n Simple_repeat Simple_repeat 1 33 0 4 938 414 155 31 0 chr3 46314240 46314337 -113285446 + CT-rich Low_complexity Low_complexity 1 100 0 4 938 2818 161 6 4 chr3 46315749 46316222 -113283561 - Lx2 LINE L1 -453 6544 6071 4 938 2461 125 20 5 chr3 46316222 46316616 -113283167 + Lx2 LINE L1 6597 6996 -1 4 938 1864 121 21 39 chr3 46316607 46316628 -113283155 + Lx LINE L1 6322 6340 -314 4 938 4043 170 25 97 chr3 46316628 46317599 -113282184 + RLTR13D6 LTR ERVK 2 902 0 4 938 1864 121 21 39 chr3 46317599 46317913 -113281870 + Lx LINE L1 6341 6651 -3 4 938 978 96 13 6 chr3 46317938 46318096 -113281687 + (GGAA)n Simple_repeat Simple_repeat 2 160 0 4 938 315 0 0 0 chr3 46318618 46318653 -113281130 + (CA)n Simple_repeat Simple_repeat 2 36 0 4 938 29 70 0 0 chr3 46319343 46319400 -113280383 + AT_rich Low_complexity Low_complexity 1 57 0 4 938 22 35 0 0 chr3 46319778 46319807 -113279976 + AT_rich Low_complexity Low_complexity 1 29 0 4 938 32 0 0 0 chr3 46319903 46319935 -113279848 + AT_rich Low_complexity Low_complexity 1 32 0 4 938 21 0 0 0 chr3 46320060 46320081 -113279702 + AT_rich Low_complexity Low_complexity 1 21 0 4 938 728 89 96 15 chr3 46320315 46320451 -113279332 - L1_Mus3 LINE L1 -7 6631 6485 4 938 21 0 0 0 chr3 46320756 46320777 -113279006 + AT_rich Low_complexity Low_complexity 1 21 0 4 938 390 149 0 0 chr3 46321292 46321379 -113278404 + (A)n Simple_repeat Simple_repeat 1 87 0 4 938 564 329 104 9 chr3 46321479 46321709 -113278074 + B4A SINE B4 8 259 -33 4 938 180 77 0 0 chr3 46322312 46322338 -113277445 + (A)n Simple_repeat Simple_repeat 1 26 0 4 938 1232 208 30 0 chr3 46323374 46323638 -113276145 + Lx7 LINE L1 6818 7089 -607 4 938 650 319 109 46 chr3 46323867 46324215 -113275568 - MTEb LTR MaLR 0 379 10 4 938 2111 144 29 11 chr3 46324431 46324810 -113274973 + Lx LINE L1 6264 6649 -5 4 938 4721 141 40 5 chr3 46325997 46326781 -113273002 - Lx2 LINE L1 -14 6983 6173 4 938 1694 239 86 138 chr3 46327067 46327684 -113272099 - RMER17B LTR ERVK -48 812 273 4 938 644 64 11 0 chr3 46327684 46327778 -113272005 + (GA)n Simple_repeat Simple_repeat 2 96 0 4 938 1694 228 96 138 chr3 46327778 46328143 -113271640 - RMER17B LTR ERVK -556 402 1 4 938 273 89 0 0 chr3 46328523 46328568 -113271215 + (TTTTTG)n Simple_repeat Simple_repeat 4 48 0 4 938 561 322 46 0 chr3 46329371 46329545 -113270238 + B3 SINE B2 9 190 -26 4 938 189 0 0 0 chr3 46329547 46329568 -113270215 + (GGGA)n Simple_repeat Simple_repeat 1 21 0 4 938 3562 109 43 4 chr3 46329570 46330105 -113269678 + Lx3_Mus LINE L1 6050 6605 -404 4 938 207 0 0 0 chr3 46330515 46330538 -113269245 + (TC)n Simple_repeat Simple_repeat 1 23 0 4 938 974 107 0 23 chr3 46330540 46330712 -113269071 + (TTTC)n Simple_repeat Simple_repeat 3 170 0 4 938 439 266 18 0 chr3 46330830 46330943 -113268840 + ORR1C1 LTR MaLR 4 118 -260 4 938 1541 55 20 0 chr3 46330949 46331150 -113268633 - L1Md_F3 LINE L1 -14 6570 6366 4 938 1688 30 5 0 chr3 46331150 46331348 -113268435 + L1Md_F3 LINE L1 6010 6208 -376 4 938 1331 200 48 11 chr3 46331350 46331618 -113268165 + ORR1C1 LTR MaLR 93 370 -8 4 938 2526 77 14 0 chr3 46332668 46333020 -113266763 + L1_Mus1 LINE L1 6210 6566 -1 4 938 920 87 0 0 chr3 46334500 46334626 -113265157 - L1_Mus2 LINE L1 -7 6559 6434 4 938 315 309 0 0 chr3 46335297 46335381 -113264402 + B4 SINE B4 1 84 -208 4 938 381 351 87 66 chr3 46335579 46335762 -113264021 + B4A SINE B4 106 292 0 4 938 245 109 0 21 chr3 46335845 46335892 -113263891 + (TA)n Simple_repeat Simple_repeat 2 47 0 4 938 622 307 46 10 chr3 46337851 46338045 -113261738 - B3 SINE B2 -5 211 11 4 938 2070 187 91 88 chr3 46338052 46338633 -113261150 - RMER4B LTR ERVK 0 585 3 4 938 2041 115 30 24 chr3 46338825 46339164 -113260619 + L1Md_F2 LINE L1 6242 6582 0 4 938 867 68 0 0 chr3 46339204 46339322 -113260461 + B1_Mus2 SINE Alu 26 143 -4 4 938 43 0 0 0 chr3 46339324 46339367 -113260416 + AT_rich Low_complexity Low_complexity 1 43 0 4 938 416 219 357 42 chr3 46339387 46339539 -113260244 + B3 SINE B2 10 209 -7 4 938 7093 139 14 7 chr3 46339740 46341467 -113258316 - Lx LINE L1 0 6654 4916 4 938 618 285 29 43 chr3 46341465 46341674 -113258109 - Lx8 LINE L1 -995 6478 6273 4 938 180 0 0 0 chr3 46341681 46341701 -113258082 + (TTG)n Simple_repeat Simple_repeat 2 21 0 4 938 1104 59 0 0 chr3 46341701 46341837 -113257946 - B1_Mm SINE Alu -10 137 2 4 938 18435 183 16 67 chr3 46343233 46343499 -113256284 + Lx2B LINE L1 1755 2008 -3878 4 938 222 37 0 0 chr3 46343499 46343526 -113256257 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 4 938 18435 183 16 67 chr3 46343526 46343637 -113256146 + Lx2B LINE L1 2009 2099 -3787 4 938 585 98 0 0 chr3 46343637 46343719 -113256064 + B1_Mus1 SINE Alu 1 82 -66 4 938 18435 183 16 67 chr3 46343719 46343968 -113255815 + Lx2B LINE L1 2100 2305 -3581 4 938 3317 35 0 2 chr3 46343968 46344365 -113255418 - MTA_Mm LTR MaLR 0 396 1 4 938 18435 176 17 49 chr3 46344365 46349112 -113250671 + Lx2B LINE L1 2306 6999 -1 4 938 278 290 62 41 chr3 46349834 46349931 -113249852 + B3A SINE B2 100 198 0 4 938 448 342 56 36 chr3 46350226 46350478 -113249305 - Lx8 LINE L1 -148 7325 7069 4 938 1077 107 0 0 chr3 46350516 46350786 -113248997 + (TC)n Simple_repeat Simple_repeat 1 270 0 4 938 953 130 7 0 chr3 46350786 46350932 -113248851 - B1_Mus1 SINE Alu 0 148 2 4 938 550 300 53 63 chr3 46350932 46351234 -113248549 - Lx8 LINE L1 -447 7026 6728 4 938 23 54 0 0 chr3 46351234 46351271 -113248512 + AT_rich Low_complexity Low_complexity 1 37 0 4 938 369 0 0 0 chr3 46352177 46352218 -113247565 + (TG)n Simple_repeat Simple_repeat 2 42 0 4 938 36 23 0 0 chr3 46352335 46352378 -113247405 + AT_rich Low_complexity Low_complexity 1 43 0 4 938 269 186 0 14 chr3 46353199 46353270 -113246513 + (TG)n Simple_repeat Simple_repeat 1 70 0 4 938 662 24 0 12 chr3 46353649 46353734 -113246049 + (GGAA)n Simple_repeat Simple_repeat 2 85 0 4 938 267 114 0 0 chr3 46356018 46356062 -113243721 + (CA)n Simple_repeat Simple_repeat 2 45 0 4 938 2838 195 51 26 chr3 46356705 46357310 -113242473 + Lx4B LINE L1 6435 7054 -4 4 938 306 0 0 0 chr3 46358833 46358867 -113240916 + (TC)n Simple_repeat Simple_repeat 1 34 0 4 938 501 17 0 0 chr3 46358867 46358924 -113240859 + (CA)n Simple_repeat Simple_repeat 1 58 0 4 938 508 333 24 63 chr3 46359065 46359084 -113240699 - B3A SINE B2 0 198 183 4 938 510 17 0 0 chr3 46359084 46359143 -113240640 + (TG)n Simple_repeat Simple_repeat 2 60 0 4 938 562 333 24 63 chr3 46359143 46359328 -113240455 - B3 SINE B2 -16 182 2 4 938 347 314 52 62 chr3 46360254 46360429 -113239354 + ORR1E LTR MaLR 1 187 -172 4 938 581 328 61 25 chr3 46360595 46360873 -113238910 + MTE-int LTR MaLR 1 288 -1292 4 938 423 346 62 27 chr3 46360877 46361278 -113238505 + L1MA5 LINE L1 5426 5840 -460 5 938 37 52 0 0 chr3 46361349 46361407 -113238376 + AT_rich Low_complexity Low_complexity 1 58 0 5 938 268 278 14 7 chr3 46361413 46361525 -113238258 + GA-rich Low_complexity Low_complexity 1 112 0 5 938 436 338 13 34 chr3 46361577 46361715 -113238068 + B3 SINE B2 28 166 -50 5 938 207 0 0 0 chr3 46361715 46361738 -113238045 + (CATA)n Simple_repeat Simple_repeat 4 26 0 5 938 415 338 12 37 chr3 46361738 46361772 -113238011 + B3A SINE B2 165 198 0 5 938 22 35 0 0 chr3 46361804 46361833 -113237950 + AT_rich Low_complexity Low_complexity 1 29 0 5 938 231 355 44 31 chr3 46362681 46362841 -113236942 + L3b LINE CR1 4 165 -317 5 938 26 0 0 0 chr3 46363160 46363186 -113236597 + AT_rich Low_complexity Low_complexity 1 26 0 5 938 258 32 0 0 chr3 46364577 46364608 -113235175 + (TG)n Simple_repeat Simple_repeat 1 31 0 5 938 969 104 15 0 chr3 46364980 46365115 -113234668 - B1_Mus2 SINE Alu -6 141 5 5 938 403 69 28 0 chr3 46365123 46365195 -113234588 + (CAAAA)n Simple_repeat Simple_repeat 2 75 0 5 938 300 328 11 34 chr3 46365510 46365687 -113234096 + GA-rich Low_complexity Low_complexity 4 176 0 5 938 24 32 0 0 chr3 46366535 46366566 -113233217 + AT_rich Low_complexity Low_complexity 1 31 0 5 938 228 360 40 27 chr3 46367359 46367656 -113232127 + L1M1 LINE L1 5308 5608 -695 5 938 354 182 0 0 chr3 46369670 46369736 -113230047 + HAL1-3A_ME LINE L1 1953 2018 -840 5 938 354 220 0 0 chr3 46369736 46369836 -113229947 + (CA)n Simple_repeat Simple_repeat 1 100 0 5 938 21 36 0 0 chr3 46370513 46370541 -113229242 + AT_rich Low_complexity Low_complexity 1 28 0 5 938 234 0 0 0 chr3 46370955 46370981 -113228802 + (A)n Simple_repeat Simple_repeat 1 26 0 5 938 26 0 0 0 chr3 46372905 46372931 -113226852 + AT_rich Low_complexity Low_complexity 1 26 0 5 938 578 149 8 0 chr3 46373063 46373197 -113226586 + (TA)n Simple_repeat Simple_repeat 2 136 0 5 938 1070 117 39 16 chr3 46373199 46373381 -113226402 - B2_Mm2 SINE B2 -8 187 2 5 938 200 211 19 0 chr3 46373535 46373587 -113226196 + (CA)n Simple_repeat Simple_repeat 2 54 0 5 938 26 0 0 0 chr3 46374669 46374695 -113225088 + AT_rich Low_complexity Low_complexity 1 26 0 5 938 42 0 0 0 chr3 46376252 46376294 -113223489 + AT_rich Low_complexity Low_complexity 1 42 0 5 938 180 375 22 11 chr3 46376416 46376505 -113223278 - L2a LINE L2 -10 3416 3327 5 938 374 0 22 0 chr3 46376881 46376927 -113222856 + (TTA)n Simple_repeat Simple_repeat 2 48 0 5 938 1166 43 0 0 chr3 46376931 46377071 -113222712 - B1_Mm SINE Alu -7 140 1 5 938 5972 100 29 11 chr3 46377090 46378072 -113221711 - L1_Mus4 LINE L1 0 6566 5593 5 938 25 0 0 0 chr3 46378577 46378602 -113221181 + AT_rich Low_complexity Low_complexity 1 25 0 5 938 232 169 51 0 chr3 46379467 46379526 -113220257 + (TCTA)n Simple_repeat Simple_repeat 3 64 0 5 938 6378 179 210 53 chr3 46379530 46381461 -113218322 + L1_Mur2 LINE L1 3114 5346 -531 5 938 523 39 26 0 chr3 46381461 46381539 -113218244 + (TCTA)n Simple_repeat Simple_repeat 4 83 0 5 938 321 229 0 0 chr3 46381676 46381737 -113218046 - B3A SINE B2 -135 63 3 5 938 1665 133 30 67 chr3 46382261 46382591 -113217192 - ORR1A3 LTR MaLR -8 318 1 5 938 235 264 0 0 chr3 46383486 46383539 -113216244 - B1_Mur2 SINE Alu -9 140 88 5 938 258 58 57 19 chr3 46383824 46383877 -113215906 + (CAAAA)n Simple_repeat Simple_repeat 1 55 0 5 938 5003 269 78 18 chr3 46384893 46386866 -113212917 - Lx6 LINE L1 -70 7390 5308 5 938 194 150 0 24 chr3 46388533 46388574 -113211209 + (CATATA)n Simple_repeat Simple_repeat 5 44 0 5 938 4040 137 119 6 chr3 46390097 46390826 -113208957 + L1_Mus1 LINE L1 387 1198 -5418 5 938 7606 88 3 0 chr3 46390821 46392396 -113207387 + L1_Mus1 LINE L1 4989 6567 0 5 938 322 297 35 43 chr3 46393268 46393384 -113206399 + PB1D9 SINE Alu 6 120 0 5 938 645 49 0 0 chr3 46393390 46393471 -113206312 + (TTCC)n Simple_repeat Simple_repeat 4 84 0 5 938 504 117 0 0 chr3 46393453 46393530 -113206253 + (TC)n Simple_repeat Simple_repeat 1 77 0 5 938 404 353 14 22 chr3 46393530 46393669 -113206114 - B1_Mur2 SINE Alu -5 144 7 5 938 878 279 20 29 chr3 46394113 46394375 -113205408 - MLT1E2 LTR MaLR -345 279 1 5 938 22 35 0 0 chr3 46394550 46394579 -113205204 + AT_rich Low_complexity Low_complexity 1 29 0 5 938 963 290 93 3 chr3 46395549 46395860 -113203923 - Lx6 LINE L1 -263 7197 6859 5 938 866 251 113 29 chr3 46397342 46397687 -113202096 + ORR1D1 LTR MaLR 1 374 0 5 938 260 410 21 27 chr3 46398126 46398314 -113201469 - MTD LTR MaLR -140 260 74 5 938 244 35 50 50 chr3 46398317 46398377 -113201406 + (CAAAAA)n Simple_repeat Simple_repeat 2 61 0 5 938 271 265 0 14 chr3 46398378 46398447 -113201336 - MTD LTR MaLR -351 68 1 5 938 29 47 0 0 chr3 46398467 46398510 -113201273 + AT_rich Low_complexity Low_complexity 1 43 0 5 938 15367 182 35 47 chr3 46398524 46398905 -113200878 + L1_Mus2 LINE L1 2488 2869 -3017 5 938 473 0 18 0 chr3 46398905 46398962 -113200821 + (GAAA)n Simple_repeat Simple_repeat 3 60 0 5 117 15367 171 34 41 chr3 46398962 46402696 -113197087 + L1_Mus2 LINE L1 2870 6561 -5 5 939 624 111 0 0 chr3 46402809 46402908 -113196875 + (GA)n Simple_repeat Simple_repeat 2 100 0 5 939 22 56 0 0 chr3 46405541 46405577 -113194206 + AT_rich Low_complexity Low_complexity 1 36 0 5 939 1170 68 0 7 chr3 46405660 46405808 -113193975 - B1_Mm SINE Alu 0 147 1 5 939 685 326 53 32 chr3 46406114 46406399 -113193384 + B4 SINE B4 2 292 0 5 939 324 340 68 49 chr3 46407198 46407461 -113192322 - L1M4 LINE L1 -989 5157 4890 5 939 26 30 0 0 chr3 46408544 46408577 -113191206 + AT_rich Low_complexity Low_complexity 1 33 0 5 939 253 269 0 15 chr3 46409656 46409724 -113190059 + (CA)n Simple_repeat Simple_repeat 2 68 0 5 939 261 0 0 0 chr3 46409953 46409982 -113189801 + (TG)n Simple_repeat Simple_repeat 2 30 0 5 939 345 258 17 84 chr3 46409994 46410231 -113189552 + L1MA4A LINE L1 5116 5336 -807 5 939 357 109 0 0 chr3 46410233 46410288 -113189495 + (TG)n Simple_repeat Simple_repeat 2 56 0 5 939 264 319 13 51 chr3 46410402 46410574 -113189209 + L1MA4A LINE L1 5757 5922 -378 5 939 1338 313 30 8 chr3 46410614 46411013 -113188770 + RMER1B Other Other 340 747 -319 5 939 319 150 0 0 chr3 46411014 46411074 -113188709 + RMER1B Other Other 1007 1066 0 5 939 414 0 0 0 chr3 46412003 46412049 -113187734 + (TG)n Simple_repeat Simple_repeat 1 46 0 5 939 531 296 48 24 chr3 46412416 46412582 -113187201 + ORR1E LTR MaLR 2 171 -188 5 939 383 329 177 76 chr3 46412710 46413026 -113186757 + MTE2b LTR MaLR 15 362 -17 5 939 516 294 35 23 chr3 46413429 46413603 -113186180 + B3A SINE B2 5 180 -18 5 939 220 281 0 0 chr3 46413604 46413661 -113186122 + (CA)n Simple_repeat Simple_repeat 2 58 0 5 939 25 75 0 0 chr3 46414522 46414575 -113185208 + AT_rich Low_complexity Low_complexity 1 53 0 5 939 2448 216 37 39 chr3 46414871 46415493 -113184290 - L1VL4 LINE L1 -5493 809 189 5 939 719 184 7 21 chr3 46415543 46415687 -113184096 - Lx4B LINE L1 -811 6247 6106 5 939 2805 168 67 19 chr3 46415684 46416250 -113183533 + Lx4B LINE L1 6447 7039 -19 5 939 297 51 0 0 chr3 46416250 46416289 -113183494 + (CAAT)n Simple_repeat Simple_repeat 2 40 0 5 939 213 327 76 35 chr3 46417284 46417455 -113182328 + L2 LINE L2 1669 1846 -1573 5 939 1477 229 38 84 chr3 46417587 46418082 -113181701 + RLTR1B LTR ERV1 1 512 0 5 939 185 125 53 18 chr3 46419673 46419730 -113180053 + (TA)n Simple_repeat Simple_repeat 2 60 0 5 939 389 309 36 9 chr3 46420529 46420640 -113179143 - B3A SINE B2 -37 161 48 5 939 249 372 16 40 chr3 46420657 46420783 -113179000 + B3A SINE B2 70 192 -6 5 939 2055 195 34 9 chr3 46421206 46421646 -113178137 - Lx2 LINE L1 -13 6984 6534 5 939 1981 310 31 20 chr3 46421989 46422783 -113177000 + Lx8 LINE L1 6331 7133 -340 5 939 2892 206 59 17 chr3 46423055 46423633 -113176150 + RMER20B LTR ERVK 1 602 -25 5 939 22 35 0 0 chr3 46423735 46423764 -113176019 + AT_rich Low_complexity Low_complexity 1 29 0 5 939 185 94 0 30 chr3 46425499 46425532 -113174251 + (GAAAA)n Simple_repeat Simple_repeat 3 34 0 5 939 183 42 0 0 chr3 46425532 46425556 -113174227 + (CAA)n Simple_repeat Simple_repeat 2 25 0 5 939 960 88 0 0 chr3 46425774 46425910 -113173873 + (GGGAGA)n Simple_repeat Simple_repeat 4 139 0 5 939 296 48 24 0 chr3 46426156 46426198 -113173585 + (TA)n Simple_repeat Simple_repeat 2 44 0 5 939 1624 200 199 5 chr3 46427099 46427546 -113172237 + RMER6C LTR ERVK 157 690 0 5 939 198 0 0 0 chr3 46427778 46427800 -113171983 + (T)n Simple_repeat Simple_repeat 1 22 0 5 939 33 43 0 0 chr3 46427999 46428046 -113171737 + AT_rich Low_complexity Low_complexity 1 47 0 5 939 1535 56 13 61 chr3 46428175 46428404 -113171379 - L1Md_F3 LINE L1 -14 6570 6353 5 939 22 0 0 0 chr3 46429410 46429432 -113170351 + AT_rich Low_complexity Low_complexity 1 22 0 5 939 383 117 21 21 chr3 46430865 46430961 -113168822 + (TA)n Simple_repeat Simple_repeat 2 97 0 5 939 279 293 0 0 chr3 46431554 46431629 -113168154 + RLTR12B LTR ERVK 20 94 -434 5 939 882 80 16 0 chr3 46431659 46431784 -113167999 - L1_Mur1 LINE L1 -1104 4782 4656 5 939 619 93 0 20 chr3 46431784 46431883 -113167900 + L1_Mus1 LINE L1 6471 6567 0 5 939 3796 84 25 2 chr3 46431897 46432424 -113167359 + L1_Mus2 LINE L1 5978 6516 -50 5 939 2093 97 12 6 chr3 46432445 46432768 -113167015 - L1_Mur1 LINE L1 -1220 4666 4342 5 939 4515 132 4 6 chr3 46432763 46433470 -113166313 + Lx3A LINE L1 6254 6959 -22 5 939 587 223 55 187 chr3 46433507 46433887 -113165896 + RLTR12B LTR ERVK 122 451 -77 5 939 186 43 0 0 chr3 46433952 46433975 -113165808 + (TG)n Simple_repeat Simple_repeat 1 23 0 5 939 25 75 0 0 chr3 46433999 46434052 -113165731 + AT_rich Low_complexity Low_complexity 1 53 0 5 939 5453 249 75 39 chr3 46434052 46435758 -113164025 + L1_Mur3 LINE L1 346 2056 -3824 6 939 558 98 0 0 chr3 46435758 46435840 -113163943 + (CA)n Simple_repeat Simple_repeat 2 83 0 6 939 5453 207 62 36 chr3 46435840 46436522 -113163261 + L1_Mur3 LINE L1 2057 2752 -3128 6 939 198 71 0 0 chr3 46436540 46436568 -113163215 + (TATATG)n Simple_repeat Simple_repeat 4 31 0 6 939 883 335 48 7 chr3 46436581 46437043 -113162740 - Lx9 LINE L1 -286 7358 6878 6 939 262 286 29 0 chr3 46437049 46437119 -113162664 + RMER15-int LTR ERVL 4572 4643 -356 6 939 204 40 0 0 chr3 46437152 46437177 -113162606 + (TCTCTG)n Simple_repeat Simple_repeat 5 29 0 6 939 285 29 0 0 chr3 46437195 46437229 -113162554 + (TG)n Simple_repeat Simple_repeat 1 34 0 6 939 355 175 8 8 chr3 46437241 46437362 -113162421 + CT-rich Low_complexity Low_complexity 2 122 0 6 939 676 310 75 27 chr3 46437547 46437882 -113161901 + Lx8 LINE L1 6784 7134 -339 6 939 25 0 0 0 chr3 46438050 46438075 -113161708 + AT_rich Low_complexity Low_complexity 1 25 0 6 939 3810 108 23 12 chr3 46438782 46439384 -113160399 - Lx3_Mus LINE L1 -16 6993 6385 6 939 617 54 0 0 chr3 46439401 46439475 -113160308 - L1Md_F2 LINE L1 -201 6381 6308 6 939 1214 71 6 0 chr3 46439475 46439644 -113160139 + L1Md_A LINE L1 6413 6582 0 6 939 5165 114 8 13 chr3 46439662 46440122 -113159661 - Lx3_Mus LINE L1 -638 6371 5916 6 939 1277 78 6 0 chr3 46440122 46440301 -113159482 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 6 939 306 0 0 0 chr3 46440302 46440336 -113159447 + (TTCC)n Simple_repeat Simple_repeat 3 36 0 6 939 5165 92 6 40 chr3 46440336 46440725 -113159058 - Lx3_Mus LINE L1 -1094 5915 5541 6 939 2071 253 82 26 chr3 46440748 46441333 -113158450 - RLTR17 LTR ERVK -74 618 1 6 939 214 135 38 19 chr3 46442687 46442740 -113157043 + (CATA)n Simple_repeat Simple_repeat 2 55 0 6 939 369 275 0 0 chr3 46442886 46442977 -113156806 + RSINE1 SINE B4 35 125 -40 6 939 324 0 0 0 chr3 46443723 46443759 -113156024 + (TAA)n Simple_repeat Simple_repeat 1 36 0 6 939 333 376 17 8 chr3 46443914 46444032 -113155751 - RSINE1 SINE B4 -34 131 13 6 939 245 291 0 92 chr3 46444267 46444354 -113155429 + RSINE1 SINE B4 87 165 0 6 939 225 299 88 64 chr3 46444711 46444836 -113154947 + B4A SINE B4 1 128 -164 6 939 221 394 11 56 chr3 46444836 46444891 -113154892 + B3A SINE B2 1 172 -26 6 939 789 192 89 0 chr3 46445090 46445236 -113154547 + RLTR26 LTR ERVK 1 159 -483 6 939 794 38 0 19 chr3 46445272 46445378 -113154405 - L1_Mus1 LINE L1 -584 5983 5880 6 939 3157 64 0 0 chr3 46445378 46445767 -113154016 - L1_Mus1 LINE L1 -152 6415 6027 6 939 1188 77 0 12 chr3 46445767 46445939 -113153844 + L1_Mus1 LINE L1 6394 6563 -4 6 939 1443 186 22 99 chr3 46445950 46446273 -113153510 + RLTR26 LTR ERVK 345 642 0 6 939 976 131 0 7 chr3 46446287 46446433 -113153350 - B1_Mus2 SINE Alu -1 146 2 6 939 645 233 88 54 chr3 46446986 46447281 -113152502 - Lx9 LINE L1 0 7644 7340 6 939 998 294 18 18 chr3 46447681 46447965 -113151818 - Lx6 LINE L1 -19 7441 7158 6 939 333 0 0 0 chr3 46448173 46448210 -113151573 + (CA)n Simple_repeat Simple_repeat 2 38 0 6 939 412 311 64 35 chr3 46449273 46449476 -113150307 - Kanga1 DNA Tc2 -1154 591 383 6 939 28 0 0 0 chr3 46449612 46449640 -113150143 + AT_rich Low_complexity Low_complexity 1 28 0 6 939 1253 252 137 27 chr3 46449755 46450165 -113149618 + RLTR20B3 LTR ERVK 23 480 -97 6 939 234 91 0 0 chr3 46450165 46450198 -113149585 + (TG)n Simple_repeat Simple_repeat 2 34 0 6 939 1253 252 137 27 chr3 46450198 46450231 -113149552 + RLTR20B3 LTR ERVK 481 514 -63 6 939 660 244 165 8 chr3 46452087 46452323 -113147460 - RMER1C Other Other -384 958 686 6 939 873 202 88 78 chr3 46452331 46452626 -113147157 + RMER1C Other Other 1030 1327 -15 6 939 450 0 0 0 chr3 46452663 46452713 -113147070 + (TA)n Simple_repeat Simple_repeat 1 50 0 6 939 279 0 0 0 chr3 46452713 46452743 -113147040 + (GA)n Simple_repeat Simple_repeat 2 32 0 6 939 5745 56 0 0 chr3 46453020 46453736 -113146047 - L1Md_F2 LINE L1 0 6582 5867 6 939 4448 83 0 0 chr3 46453737 46454330 -113145453 + L1_Mm LINE L1 4601 5193 -690 6 939 2162 99 15 45 chr3 46454330 46454667 -113145116 + IAPLTR2b LTR ERVK 1 327 0 6 939 1004 161 0 70 chr3 46454668 46454869 -113144914 + IAPEz-int LTR ERVK 9 195 -6286 6 939 227 321 0 0 chr3 46454869 46454922 -113144861 + RLTR27 LTR ERVK 223 275 -34 6 939 20091 58 19 18 chr3 46454922 46457528 -113142255 + IAPEz-int LTR ERVK 168 2774 -3707 6 939 3123 17 0 0 chr3 46457526 46457883 -113141900 + IAPEz-int LTR ERVK 4001 4357 -2124 6 939 5867 59 13 18 chr3 46457874 46458649 -113141134 + IAPEz-int LTR ERVK 5709 6479 -2 6 939 2175 96 15 45 chr3 46458651 46458988 -113140795 + IAPLTR2b LTR ERVK 1 327 0 6 939 5544 54 1 0 chr3 46458988 46459675 -113140108 + L1_Mm LINE L1 5188 5875 -8 6 939 207 0 0 0 chr3 46459785 46459808 -113139975 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 6 939 21 0 0 0 chr3 46460427 46460448 -113139335 + AT_rich Low_complexity Low_complexity 1 21 0 6 939 993 307 56 19 chr3 46460896 46461255 -113138528 + MTD LTR MaLR 35 406 -13 6 939 774 191 0 22 chr3 46461363 46461502 -113138281 - B1_Mur4 SINE Alu -5 145 10 6 939 401 0 20 0 chr3 46461597 46461646 -113138137 + (TAA)n Simple_repeat Simple_repeat 2 51 0 6 939 251 314 124 25 chr3 46461684 46461805 -113137978 + LTR69 LTR ERVL 17 149 -439 6 939 454 311 167 5 chr3 46461942 46462152 -113137631 + LTR69 LTR ERVL 325 568 -20 6 939 339 65 0 0 chr3 46462658 46462704 -113137079 + (TG)n Simple_repeat Simple_repeat 1 46 0 6 939 545 342 102 12 chr3 46462754 46463000 -113136783 - B4A SINE B4 -20 272 5 6 939 224 368 127 13 chr3 46464360 46464517 -113135266 + B3A SINE B2 1 175 -23 6 939 387 241 194 0 chr3 46465579 46465687 -113134096 - MTC LTR MaLR -83 296 168 6 939 492 174 0 0 chr3 46465687 46465779 -113134004 + CT-rich Low_complexity Low_complexity 2 93 0 6 939 402 222 40 20 chr3 46466244 46466345 -113133438 - MTC LTR MaLR -306 115 13 6 939 367 279 56 14 chr3 46468059 46468201 -113131582 + MER92B LTR ERV1 74 221 -415 6 939 428 260 37 28 chr3 46470721 46470828 -113128955 - RSINE1 SINE B4 -40 125 18 6 939 1038 203 23 5 chr3 46470829 46471047 -113128736 - URR1B DNA MER1_type 0 225 4 6 939 1823 81 4 23 chr3 46471090 46471356 -113128427 - L1Md_F2 LINE L1 -1 6581 6321 6 939 444 355 45 5 chr3 46471906 46472107 -113127676 - B3 SINE B2 -6 210 2 6 939 795 296 60 29 chr3 46473192 46473526 -113126257 - MTD LTR MaLR -71 348 3 6 939 423 0 0 0 chr3 46473848 46473895 -113125888 + (TA)n Simple_repeat Simple_repeat 1 47 0 6 939 212 204 0 18 chr3 46473990 46474045 -113125738 + A-rich Low_complexity Low_complexity 6 59 0 6 939 497 386 5 0 chr3 46474092 46474276 -113125507 - B3 SINE B2 -7 209 25 6 939 3199 95 27 82 chr3 46474318 46474650 -113125133 + MusHAL1 LINE L1 2162 2503 -209 6 939 705 20 20 20 chr3 46474650 46474750 -113125033 + (GAAA)n Simple_repeat Simple_repeat 4 103 0 6 939 3199 95 27 82 chr3 46474750 46475000 -113124783 + MusHAL1 LINE L1 2504 2712 0 6 939 1028 243 34 5 chr3 46475266 46475677 -113124106 + L1_Mur3 LINE L1 876 1367 -4510 6 939 4404 68 32 0 chr3 46475674 46476262 -113123521 - L1_Mus2 LINE L1 -278 6288 5682 6 939 1246 64 0 12 chr3 46476262 46476435 -113123348 + L1_Mus2 LINE L1 6396 6566 0 6 939 5974 188 123 28 chr3 46476439 46476981 -113122802 + L1_Mur3 LINE L1 1360 1916 -3961 6 939 233 29 29 0 chr3 46476981 46477015 -113122768 + (CAA)n Simple_repeat Simple_repeat 2 36 0 6 939 5974 188 123 28 chr3 46477015 46478091 -113121692 + L1_Mur3 LINE L1 1917 3130 -2747 6 939 529 232 6 112 chr3 46478091 46478261 -113121522 - RLTR20D LTR ERVK -344 224 73 6 939 895 96 66 7 chr3 46478263 46478400 -113121383 + Lx3B LINE L1 6753 6897 -76 6 939 305 203 0 0 chr3 46478441 46478500 -113121283 - RLTR16 LTR ERVK -446 59 1 6 939 22 0 0 0 chr3 46478683 46478705 -113121078 + AT_rich Low_complexity Low_complexity 1 22 0 6 939 1157 84 6 0 chr3 46479648 46479815 -113119968 + (TTC)n Simple_repeat Simple_repeat 1 168 0 6 939 1216 71 0 12 chr3 46480933 46481105 -113118678 - L1Md_F2 LINE L1 0 6582 6413 6 939 2452 158 10 2 chr3 46481171 46481583 -113118200 - RLTR31_Mm LTR ERVK -146 415 1 6 939 21 0 0 0 chr3 46482345 46482366 -113117417 + AT_rich Low_complexity Low_complexity 1 21 0 6 939 838 285 70 54 chr3 46482436 46482807 -113116976 - MTEa LTR MaLR 0 379 3 6 939 352 367 31 0 chr3 46483021 46483149 -113116634 + MER54B LTR ERVL 67 198 -595 6 939 1053 256 68 25 chr3 46483189 46483557 -113116226 + ORR1C2 LTR MaLR 1 384 0 6 939 1023 117 0 0 chr3 46484352 46484532 -113115251 + (TC)n Simple_repeat Simple_repeat 1 180 0 6 939 231 345 0 54 chr3 46484534 46484626 -113115157 - RLTR18 LTR ERVK -527 89 3 6 939 2302 217 19 28 chr3 46484814 46485346 -113114437 - RLTR11A2 LTR ERVK 0 527 1 6 939 5872 146 40 38 chr3 46485401 46486500 -113113283 - Lx3A LINE L1 -1 6980 5880 6 939 1490 55 0 0 chr3 46486502 46486685 -113113098 + Lx3_Mus LINE L1 5699 5881 -1128 6 939 2488 111 29 27 chr3 46486735 46487143 -113112640 + RLTR9E LTR ERVK 1 409 0 6 939 252 254 16 16 chr3 46487337 46487401 -113112382 - B3A SINE B2 -129 69 6 6 939 240 86 0 0 chr3 46487563 46487598 -113112185 + (CA)n Simple_repeat Simple_repeat 2 36 0 6 939 289 275 145 51 chr3 46488238 46488376 -113111407 - Tigger5 DNA MER2_type -9 2397 2247 6 939 22 35 0 0 chr3 46488716 46488745 -113111038 + AT_rich Low_complexity Low_complexity 1 29 0 6 939 206 250 0 19 chr3 46489673 46489726 -113110057 + (TATG)n Simple_repeat Simple_repeat 3 54 0 6 939 5300 165 41 23 chr3 46490507 46491498 -113108285 - Lx3A LINE L1 -2 6979 5969 6 939 3931 122 96 148 chr3 46491498 46492478 -113107305 + RLTR13B3 LTR ERVK 1 929 0 6 939 5300 165 41 23 chr3 46492478 46492526 -113107257 - Lx3A LINE L1 -1013 5968 5921 6 939 14638 110 23 33 chr3 46492527 46492920 -113106863 + Lx3_Mus LINE L1 3512 3899 -1987 6 939 970 151 0 0 chr3 46492920 46493066 -113106717 + B1_Mus2 SINE Alu 2 147 0 6 939 14638 108 20 28 chr3 46493066 46495141 -113104642 + Lx3_Mus LINE L1 3900 5954 -1055 6 939 466 347 46 98 chr3 46496166 46496452 -113103331 + B4A SINE B4 2 273 -19 6 939 348 24 0 0 chr3 46496452 46496493 -113103290 + (CAA)n Simple_repeat Simple_repeat 1 41 0 6 939 466 347 46 98 chr3 46496493 46496513 -113103270 + B4A SINE B4 274 292 0 6 939 282 242 30 10 chr3 46496782 46496818 -113102965 + polypyrimidine Low_complexity Low_complexity 68 104 0 6 939 1103 75 0 7 chr3 46496818 46496965 -113102818 - B1_Mus1 SINE Alu -1 147 2 6 939 282 242 30 10 chr3 46496965 46497028 -113102755 + polypyrimidine Low_complexity Low_complexity 4 67 0 6 939 266 279 91 47 chr3 46497145 46497332 -113102451 - L1M2 LINE L1 -1441 4699 4502 6 939 385 189 289 26 chr3 46497367 46497530 -113102253 - RLTR25B LTR ERVK -32 996 783 7 939 225 0 0 0 chr3 46497530 46497555 -113102228 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 7 939 385 189 289 26 chr3 46497555 46497581 -113102202 - RLTR25B LTR ERVK -246 782 757 7 939 213 39 0 0 chr3 46497627 46497653 -113102130 + (A)n Simple_repeat Simple_repeat 1 26 0 7 939 26 0 0 0 chr3 46497691 46497717 -113102066 + AT_rich Low_complexity Low_complexity 1 26 0 7 939 1188 234 19 7 chr3 46497905 46498215 -113101568 + L1_Mur3 LINE L1 4659 4972 -908 7 939 1719 278 67 33 chr3 46498212 46498394 -113101389 + Lx7 LINE L1 6868 7059 -637 7 939 1916 86 7 25 chr3 46498394 46498669 -113101114 - L1_Mus1 LINE L1 0 6567 6298 7 939 1719 278 67 33 chr3 46498669 46499125 -113100658 + Lx7 LINE L1 7060 7528 -168 7 939 796 163 40 51 chr3 46499137 46499312 -113100471 - B2_Mm2 SINE B2 -19 176 4 7 939 3836 144 53 11 chr3 46499335 46500000 -113099783 - Lx3C LINE L1 -2 6974 6282 7 939 7289 111 22 20 chr3 46500000 46501498 -113098285 - Lx3C LINE L1 -695 6281 4775 1 939 367 192 56 122 chr3 46501485 46501681 -113098102 + Lx7 LINE L1 7496 7678 -18 2 939 26 74 0 0 chr3 46502634 46502688 -113097095 + AT_rich Low_complexity Low_complexity 1 54 0 3 939 22 35 0 0 chr3 46502704 46502733 -113097050 + AT_rich Low_complexity Low_complexity 1 29 0 4 939 231 36 0 0 chr3 46503826 46503854 -113095929 + (CATATA)n Simple_repeat Simple_repeat 5 32 0 5 939 1043 329 16 27 chr3 46503926 46504367 -113095416 - Lx8 LINE L1 -615 6858 6423 6 939 294 217 0 80 chr3 46504532 46504632 -113095151 - L1_Mur3 LINE L1 -3046 2834 2743 7 939 498 291 151 0 chr3 46504658 46504909 -113094874 - L1_Mur3 LINE L1 -3508 2372 2084 7 939 257 0 0 29 chr3 46507142 46507176 -113092607 + (TAA)n Simple_repeat Simple_repeat 1 33 0 8 939 1237 34 0 0 chr3 46507268 46507415 -113092368 - B1_Mus1 SINE Alu 0 148 2 9 939 228 178 13 40 chr3 46507613 46507689 -113092094 + (TA)n Simple_repeat Simple_repeat 2 75 0 1 939 470 303 100 28 chr3 46507967 46508327 -113091456 - L1M5 LINE L1 -1220 4926 4541 1 939 23 0 0 0 chr3 46508520 46508543 -113091240 + AT_rich Low_complexity Low_complexity 1 23 0 1 939 1018 202 75 20 chr3 46508594 46508835 -113090948 + Lx3C LINE L1 6706 6963 -13 1 939 221 0 0 33 chr3 46508835 46508865 -113090918 + (TAA)n Simple_repeat Simple_repeat 2 30 0 1 939 1018 202 75 20 chr3 46508865 46508876 -113090907 + Lx3C LINE L1 6964 6972 -4 1 939 25 0 0 0 chr3 46509642 46509667 -113090116 + AT_rich Low_complexity Low_complexity 1 25 0 1 939 887 78 16 0 chr3 46510108 46510236 -113089547 + (TTTTC)n Simple_repeat Simple_repeat 1 130 0 1 939 1102 85 12 0 chr3 46510252 46510416 -113089367 + (TTCC)n Simple_repeat Simple_repeat 3 168 0 1 939 490 274 16 33 chr3 46511013 46511154 -113088629 - RMER20B LTR ERVK -383 133 1 1 939 257 202 130 37 chr3 46511306 46511369 -113088414 + MER54A LTR ERVL 473 547 -354 1 939 582 41 0 0 chr3 46511369 46511442 -113088341 + (GA)n Simple_repeat Simple_repeat 1 73 0 2 939 257 202 130 37 chr3 46511442 46511486 -113088297 + MER54A LTR ERVL 548 590 -311 1 939 189 74 0 0 chr3 46511868 46511895 -113087888 + (CAAAA)n Simple_repeat Simple_repeat 3 29 0 2 939 21 104 0 0 chr3 46512586 46512663 -113087120 + AT_rich Low_complexity Low_complexity 1 77 0 2 939 281 273 41 0 chr3 46512678 46512799 -113086984 + L1M5 LINE L1 3273 3398 -2748 2 939 2984 82 5 0 chr3 46512908 46513300 -113086483 + L1_Mus1 LINE L1 6173 6566 -1 2 939 225 0 0 0 chr3 46514182 46514207 -113085576 + (TTAAA)n Simple_repeat Simple_repeat 1 25 0 2 939 3522 134 63 7 chr3 46514386 46514974 -113084809 + Lx3A LINE L1 6361 6981 0 2 939 341 325 21 5 chr3 46514991 46515180 -113084603 + L1_Mur3 LINE L1 3178 3369 -2511 2 939 1648 282 84 21 chr3 46515181 46515883 -113083900 + L1_Mur3 LINE L1 4955 5700 -180 2 939 1116 252 17 27 chr3 46515915 46516216 -113083567 - RLTR20B3 LTR ERVK -41 536 239 2 939 274 282 14 0 chr3 46516289 46516360 -113083423 - ID4 SINE ID -10 73 2 2 939 325 152 17 0 chr3 46516460 46516519 -113083264 + RMER15 LTR ERVL 302 361 -214 3 939 905 102 0 0 chr3 46516928 46517055 -113082728 + B1_Mus1 SINE Alu 22 148 0 3 939 21 0 0 0 chr3 46517159 46517180 -113082603 + AT_rich Low_complexity Low_complexity 1 21 0 3 939 1340 150 4 17 chr3 46517213 46517451 -113082332 - Lx LINE L1 -9 6645 6411 3 939 1257 262 178 37 chr3 46517513 46518076 -113081707 - RLTR26 LTR ERVK 0 642 1 3 939 3403 23 5 5 chr3 46518194 46518590 -113081193 + MTA_Mm LTR MaLR 1 396 0 3 939 212 316 60 67 chr3 46519332 46519481 -113080302 + B1F SINE Alu 1 148 -1 3 939 32 43 0 0 chr3 46520156 46520202 -113079581 + AT_rich Low_complexity Low_complexity 1 46 0 3 939 1098 151 0 21 chr3 46520364 46520553 -113079230 + B2_Mm2 SINE B2 9 193 -2 3 939 24 53 0 0 chr3 46520553 46520591 -113079192 + AT_rich Low_complexity Low_complexity 1 38 0 3 939 2749 103 28 0 chr3 46520739 46521135 -113078648 + MTB_Mm LTR MaLR 1 407 0 4 939 983 278 51 38 chr3 46521140 46521879 -113077904 - Lx9 LINE L1 -161 7483 7303 4 939 582 0 72 0 chr3 46522005 46522088 -113077695 + (TCTA)n Simple_repeat Simple_repeat 2 90 0 4 939 1202 255 106 32 chr3 46522222 46522613 -113077170 + RLTR28 LTR ERVL 8 428 -96 4 939 369 0 0 0 chr3 46522613 46522654 -113077129 + (ATTG)n Simple_repeat Simple_repeat 2 42 0 4 939 1202 255 106 32 chr3 46522654 46522695 -113077088 + RLTR28 LTR ERVL 429 472 -52 4 939 559 259 40 0 chr3 46522667 46522841 -113076942 + RLTR28 LTR ERVL 344 524 0 4 939 326 306 42 58 chr3 46522841 46523032 -113076751 - Lx9 LINE L1 -1143 5003 4816 4 939 429 36 0 0 chr3 46523210 46523265 -113076518 + (CA)n Simple_repeat Simple_repeat 2 56 0 4 939 22 35 0 0 chr3 46523273 46523302 -113076481 + AT_rich Low_complexity Low_complexity 1 29 0 4 939 313 204 80 45 chr3 46523677 46523791 -113075992 - ORR1D2 LTR MaLR -23 396 232 4 939 504 0 0 0 chr3 46523791 46523847 -113075936 + (GA)n Simple_repeat Simple_repeat 1 56 0 4 939 226 213 112 90 chr3 46523847 46523866 -113075917 - ORR1D2 LTR MaLR -135 284 260 4 939 329 117 0 16 chr3 46524389 46524450 -113075333 + (CA)n Simple_repeat Simple_repeat 2 61 0 4 939 387 0 0 0 chr3 46524450 46524493 -113075290 + (TA)n Simple_repeat Simple_repeat 2 44 0 5 939 31 44 0 0 chr3 46524834 46524879 -113074904 + AT_rich Low_complexity Low_complexity 1 45 0 5 939 26 50 0 0 chr3 46524906 46524946 -113074837 + AT_rich Low_complexity Low_complexity 1 40 0 5 939 21 36 0 0 chr3 46525221 46525249 -113074534 + AT_rich Low_complexity Low_complexity 1 28 0 5 939 289 321 18 9 chr3 46525849 46525962 -113073821 + Ricksha_c DNA MuDR 708 821 -1227 5 939 586 73 45 0 chr3 46525993 46526103 -113073680 + (TCTA)n Simple_repeat Simple_repeat 4 118 0 5 939 348 239 42 42 chr3 46526556 46526652 -113073131 + RLTR23 LTR ERV1 314 409 -21 5 939 584 77 11 0 chr3 46527012 46527103 -113072680 + (TG)n Simple_repeat Simple_repeat 1 92 0 5 939 185 143 48 0 chr3 46527399 46527441 -113072342 + (CATG)n Simple_repeat Simple_repeat 4 47 0 5 939 21 71 0 0 chr3 46528089 46528131 -113071652 + AT_rich Low_complexity Low_complexity 1 42 0 5 939 25 0 0 0 chr3 46528210 46528235 -113071548 + AT_rich Low_complexity Low_complexity 1 25 0 6 939 29 60 0 0 chr3 46528367 46528417 -113071366 + AT_rich Low_complexity Low_complexity 1 50 0 6 939 346 333 95 28 chr3 46528490 46528640 -113071143 + B3A SINE B2 1 165 -30 6 939 501 17 0 0 chr3 46528640 46528698 -113071085 + (CA)n Simple_repeat Simple_repeat 1 58 0 6 939 351 0 0 0 chr3 46528698 46528736 -113071047 + (GA)n Simple_repeat Simple_repeat 2 40 0 6 939 231 333 95 28 chr3 46528736 46528763 -113071020 + B2_Mm2 SINE B2 166 190 -5 6 939 280 315 20 20 chr3 46529365 46529514 -113070269 + CT-rich Low_complexity Low_complexity 3 151 0 6 939 189 350 95 54 chr3 46530402 46530550 -113069233 + L2b LINE L2 3228 3425 -1 6 940 870 252 5 10 chr3 46531043 46531247 -113068536 - B3 SINE B2 -9 207 5 6 940 1328 67 0 6 chr3 46531283 46531464 -113068319 + (TTCTC)n Simple_repeat Simple_repeat 1 180 0 6 940 450 53 0 0 chr3 46531464 46531521 -113068262 + (TCTCC)n Simple_repeat Simple_repeat 2 58 0 6 940 345 360 8 39 chr3 46531567 46531697 -113068086 - B4A SINE B4 -165 127 2 7 940 249 128 0 0 chr3 46532093 46532140 -113067643 + (TG)n Simple_repeat Simple_repeat 1 47 0 7 940 198 176 0 0 chr3 46532888 46532939 -113066844 + (TA)n Simple_repeat Simple_repeat 2 52 0 7 940 23 0 0 0 chr3 46532981 46533004 -113066779 + AT_rich Low_complexity Low_complexity 1 23 0 7 940 414 0 0 0 chr3 46533176 46533222 -113066561 + (TTTTG)n Simple_repeat Simple_repeat 2 47 0 7 940 3504 206 106 9 chr3 46533226 46534041 -113065742 - Lx5 LINE L1 -11 7039 6146 7 940 1277 225 78 11 chr3 46534466 46534826 -113064957 - Lx5 LINE L1 -919 6131 5748 7 940 1880 260 22 7 chr3 46534824 46535277 -113064506 - Lx5 LINE L1 -376 6674 6215 7 940 565 224 8 0 chr3 46535285 46535410 -113064373 - L1_Mur3 LINE L1 -1116 4761 4636 7 940 252 0 0 0 chr3 46535416 46535444 -113064339 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 7 940 972 124 0 0 chr3 46535490 46535627 -113064156 - B1_Mus2 SINE Alu -10 137 1 7 940 6174 199 79 18 chr3 46535627 46537217 -113062566 - L1_Mur3 LINE L1 -2126 3751 2050 7 940 234 0 0 0 chr3 46537217 46537243 -113062540 + (TG)n Simple_repeat Simple_repeat 1 26 0 8 940 6174 199 79 18 chr3 46537243 46537293 -113062490 - L1_Mur3 LINE L1 -3828 2049 2012 7 940 3776 208 45 30 chr3 46537293 46538141 -113061642 + RLTR25B LTR ERVK 1 861 -167 8 940 1815 161 164 12 chr3 46538458 46538874 -113060909 - RLTR47_MM LTR ERV1 0 532 54 8 940 35316 36 1 0 chr3 46538874 46544834 -113054949 + L1Md_T LINE L1 1 5589 -297 8 940 8983 5 0 0 chr3 46544834 46545830 -113053953 + L1Md_T LINE L1 5590 6585 0 8 940 653 70 52 17 chr3 46545847 46545963 -113053820 - RLTR47_MM LTR ERV1 -412 120 1 8 940 1145 242 65 18 chr3 46545972 46546313 -113053470 + L1_Mur1 LINE L1 802 1158 -5826 8 940 5308 196 51 13 chr3 46546306 46547550 -113052233 + L1_Mur1 LINE L1 1726 3016 -2870 8 940 746 141 39 0 chr3 46547544 46547672 -113052111 + L1_Mur1 LINE L1 4397 4529 -1348 8 940 3033 76 177 2 chr3 46547688 46548124 -113051659 - RLTR1B LTR ERV1 0 512 1 8 940 1012 212 30 22 chr3 46548124 46548552 -113051231 - L1_Mur3 LINE L1 -4443 1434 1006 7 940 21 0 0 0 chr3 46548789 46548810 -113050973 + AT_rich Low_complexity Low_complexity 1 21 0 8 940 1242 157 0 23 chr3 46548843 46549064 -113050719 - Lx2 LINE L1 -6 6991 6776 8 940 4558 148 6 37 chr3 46549067 46550038 -113049745 - Lx2 LINE L1 -654 6343 5394 8 940 536 237 54 42 chr3 46550342 46550541 -113049242 + B3 SINE B2 4 195 0 8 940 450 0 0 0 chr3 46551932 46551982 -113047801 + (TTA)n Simple_repeat Simple_repeat 3 52 0 9 940 308 291 47 60 chr3 46552167 46552358 -113047425 - B4A SINE B4 0 292 108 9 940 5829 200 40 11 chr3 46552373 46553608 -113046175 - Lx3C LINE L1 -2 6974 5730 9 940 1336 222 136 188 chr3 46553715 46554178 -113045605 - RMER6A LTR ERVK -4 716 352 9 940 207 88 0 0 chr3 46554178 46554212 -113045571 + (AACTG)n Simple_repeat Simple_repeat 1 34 0 9 940 1336 222 136 188 chr3 46554212 46554503 -113045280 - RMER6A LTR ERVK -367 353 1 9 940 578 263 42 85 chr3 46555227 46555510 -113044273 - Lx7 LINE L1 -3 7693 7423 9 940 3427 185 14 15 chr3 46555884 46556533 -113043250 - Lx2B LINE L1 -13 6987 6340 9 940 453 36 0 0 chr3 46558229 46558284 -113041499 + (TA)n Simple_repeat Simple_repeat 1 55 0 9 940 3132 27 0 0 chr3 46558469 46558834 -113040949 - L1Md_F3 LINE L1 -295 6289 5925 9 940 684 44 0 50 chr3 46558838 46559000 -113040783 + L1Md_F3 LINE L1 6471 6584 0 9 940 4117 269 56 57 chr3 46559216 46559459 -113040324 + Lx6 LINE L1 6038 6285 -1175 1 940 389 20 0 20 chr3 46559459 46559510 -113040273 + (TTA)n Simple_repeat Simple_repeat 2 51 0 1 940 4117 269 56 57 chr3 46559510 46559993 -113039790 + Lx6 LINE L1 6286 6750 -710 1 940 795 21 0 0 chr3 46559993 46560086 -113039697 + (GAGAA)n Simple_repeat Simple_repeat 2 94 0 1 940 4117 269 56 57 chr3 46560086 46560642 -113039141 + Lx6 LINE L1 6751 7319 -141 1 940 954 110 11 6 chr3 46560752 46560926 -113038857 + (GAAA)n Simple_repeat Simple_repeat 2 176 0 1 940 827 176 6 0 chr3 46561339 46561464 -113038319 + polypyrimidine Low_complexity Low_complexity 53 177 0 1 940 1006 97 6 22 chr3 46561464 46561643 -113038140 + (TTTC)n Simple_repeat Simple_repeat 3 178 0 1 940 827 176 6 0 chr3 46561643 46561693 -113038090 + polypyrimidine Low_complexity Low_complexity 2 52 0 1 940 21 36 0 0 chr3 46562224 46562252 -113037531 + AT_rich Low_complexity Low_complexity 1 28 0 1 940 378 378 44 41 chr3 46562698 46562993 -113036790 - L3b LINE CR1 -100 382 87 1 940 1006 258 26 33 chr3 46563100 46563373 -113036410 + ORR1D1 LTR MaLR 1 271 -103 1 940 614 49 12 0 chr3 46564848 46564930 -113034853 + (TCTA)n Simple_repeat Simple_repeat 4 86 0 1 940 1562 219 115 17 chr3 46564932 46565341 -113034442 - Lx5 LINE L1 -11 7039 6591 1 940 299 270 13 119 chr3 46565382 46565609 -113034174 + Lx9 LINE L1 7435 7637 -7 1 940 616 59 0 23 chr3 46565848 46565925 -113033858 + B1_Mus2 SINE Alu 62 138 -9 1 940 291 71 0 0 chr3 46565925 46565967 -113033816 + (CAAA)n Simple_repeat Simple_repeat 2 43 0 1 940 534 83 31 0 chr3 46565999 46566095 -113033688 - L1Md_F3 LINE L1 -3 6581 6483 1 940 420 55 0 0 chr3 46566320 46566375 -113033408 + (CA)n Simple_repeat Simple_repeat 1 55 0 1 940 258 227 39 49 chr3 46566614 46566716 -113033067 + Lx9 LINE L1 7543 7643 -1 1 940 233 77 0 49 chr3 46567446 46567487 -113032296 + (TCTCCC)n Simple_repeat Simple_repeat 4 42 0 1 940 707 132 0 60 chr3 46567510 46567695 -113032088 + CT-rich Low_complexity Low_complexity 3 176 0 1 940 188 200 0 20 chr3 46567725 46567776 -113032007 + CT-rich Low_complexity Low_complexity 5 54 0 1 940 576 263 0 0 chr3 46567794 46567973 -113031810 + C-rich Low_complexity Low_complexity 1 179 0 1 940 204 143 29 0 chr3 46567973 46568008 -113031775 + CT-rich Low_complexity Low_complexity 2 37 0 1 940 350 338 31 25 chr3 46568008 46568169 -113031614 - Lx6 LINE L1 -1342 6118 5957 1 940 1028 285 85 21 chr3 46568176 46568506 -113031277 + Lx6 LINE L1 6974 7324 -136 1 940 189 196 0 0 chr3 46568506 46568552 -113031231 + T-rich Low_complexity Low_complexity 1 46 0 1 940 366 85 0 0 chr3 46568604 46568663 -113031120 + (TTTG)n Simple_repeat Simple_repeat 2 60 0 1 940 21 0 0 0 chr3 46569645 46569666 -113030117 + AT_rich Low_complexity Low_complexity 1 21 0 1 940 24 0 0 0 chr3 46570001 46570025 -113029758 + AT_rich Low_complexity Low_complexity 1 24 0 1 940 1068 70 0 0 chr3 46570533 46570675 -113029108 + (TTCC)n Simple_repeat Simple_repeat 4 145 0 1 940 324 0 0 0 chr3 46572351 46572387 -113027396 + (TA)n Simple_repeat Simple_repeat 2 37 0 1 940 774 32 0 0 chr3 46572410 46572503 -113027280 + (CA)n Simple_repeat Simple_repeat 2 94 0 1 940 405 0 0 0 chr3 46572503 46572547 -113027236 + (TA)n Simple_repeat Simple_repeat 1 45 0 1 940 1011 180 31 51 chr3 46573781 46574037 -113025746 + ORR1B1 LTR MaLR 27 352 -42 1 940 675 240 14 0 chr3 46574037 46574183 -113025600 + B1_Mus1 SINE Alu 1 148 0 1 940 986 196 81 146 chr3 46574183 46574261 -113025522 + ORR1B1 LTR MaLR 283 327 0 1 940 28 61 0 0 chr3 46575058 46575107 -113024676 + AT_rich Low_complexity Low_complexity 1 49 0 1 940 24 53 0 0 chr3 46575158 46575196 -113024587 + AT_rich Low_complexity Low_complexity 1 38 0 1 940 180 200 0 0 chr3 46576391 46576431 -113023352 + T-rich Low_complexity Low_complexity 1 40 0 1 940 956 108 7 0 chr3 46576433 46576581 -113023202 + (TTCTC)n Simple_repeat Simple_repeat 2 150 0 1 940 839 220 66 45 chr3 46576593 46576777 -113023006 + Lx7 LINE L1 7357 7548 -148 1 940 1071 95 0 0 chr3 46576777 46576924 -113022859 - B1_Mus1 SINE Alu 0 148 2 1 940 839 220 66 45 chr3 46576924 46577072 -113022711 + Lx7 LINE L1 7549 7696 0 1 940 1515 285 57 46 chr3 46577076 46577620 -113022163 + Lx9 LINE L1 6383 6932 -712 1 940 895 101 38 57 chr3 46577639 46577672 -113022111 - B2_Mm1t SINE B2 -3 190 160 1 940 225 0 0 0 chr3 46577672 46577697 -113022086 + (TTAA)n Simple_repeat Simple_repeat 2 26 0 1 940 895 101 38 57 chr3 46577697 46577820 -113021963 - B2_Mm1t SINE B2 -34 159 37 1 940 261 140 0 0 chr3 46577847 46577904 -113021879 + (T)n Simple_repeat Simple_repeat 1 57 0 1 940 657 186 62 41 chr3 46577904 46578050 -113021733 - B1_Mur4 SINE Alu 0 150 2 1 940 573 310 48 5 chr3 46578056 46578244 -113021539 + Lx9 LINE L1 6942 7137 -507 1 940 387 0 0 0 chr3 46578541 46578584 -113021199 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 940 22 0 0 0 chr3 46579629 46579651 -113020132 + AT_rich Low_complexity Low_complexity 1 22 0 1 940 446 200 63 9 chr3 46581342 46581453 -113018330 - Lx9 LINE L1 -202 7442 7326 1 940 238 248 16 89 chr3 46581539 46581663 -113018120 - Lx4B LINE L1 -4 7054 6940 1 940 1667 269 6 0 chr3 46581666 46582008 -113017775 + Lx5 LINE L1 6575 6918 -132 1 940 491 373 45 12 chr3 46582419 46582666 -113017117 + B4A SINE B4 4 258 -34 1 940 417 341 14 22 chr3 46583113 46583251 -113016532 - B1F SINE Alu -7 142 6 1 940 6937 107 18 40 chr3 46583512 46583987 -113015796 - Lx LINE L1 0 6654 6202 1 940 1044 103 0 14 chr3 46583987 46584135 -113015648 - B1_Mus1 SINE Alu 0 148 3 1 940 6937 107 18 40 chr3 46584135 46584751 -113015032 - Lx LINE L1 -453 6201 5587 1 940 2521 206 117 25 chr3 46585365 46585914 -113013869 + RMER19C LTR ERVK 1 599 -12 1 940 325 150 25 0 chr3 46586076 46586156 -113013627 + Lx LINE L1 6567 6648 -6 1 940 476 388 58 22 chr3 46586167 46586444 -113013339 + B4A SINE B4 3 289 -3 1 940 28 71 0 0 chr3 46586561 46586617 -113013166 + AT_rich Low_complexity Low_complexity 1 56 0 1 940 416 308 25 8 chr3 46586687 46586805 -113012978 - B1_Mur2 SINE Alu -28 121 2 1 940 326 270 61 86 chr3 46587171 46587600 -113012183 - L1MC4 LINE L1 -3760 2455 2038 1 940 273 357 18 94 chr3 46587609 46587779 -113012004 - B3A SINE B2 -3 195 39 1 940 5113 72 24 13 chr3 46587802 46588500 -113011283 - L1_Mus1 LINE L1 -1 6566 5861 1 940 1802 93 0 0 chr3 46588500 46588736 -113011047 - L1_Mm LINE L1 -262 5621 5386 1 940 5623 73 1 0 chr3 46588769 46589684 -113010099 - L1Md_F2 LINE L1 -279 6303 5386 1 940 21 0 0 0 chr3 46590231 46590252 -113009531 + AT_rich Low_complexity Low_complexity 1 21 0 1 940 2844 217 43 107 chr3 46590307 46591815 -113007968 + L1_Mur3 LINE L1 239 1627 -4253 1 940 1943 166 34 11 chr3 46591815 46592193 -113007590 + L1_Mur3 LINE L1 2310 2696 -3184 1 940 409 228 110 0 chr3 46592182 46592318 -113007465 + L1_Mur3 LINE L1 3184 3334 -2546 1 940 1423 120 9 4 chr3 46592426 46592652 -113007131 + L1_Mus3 LINE L1 6397 6623 -15 1 940 2636 286 78 23 chr3 46592671 46593534 -113006249 + Lx6 LINE L1 6413 7322 -138 1 940 780 53 26 0 chr3 46593539 46593653 -113006130 + (GA)n Simple_repeat Simple_repeat 2 118 0 1 940 228 203 52 39 chr3 46593667 46593744 -113006039 + Lx6 LINE L1 7372 7449 -11 1 940 217 222 0 0 chr3 46593748 46593793 -113005990 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 940 225 131 43 21 chr3 46593808 46593855 -113005928 + L1_Mur3 LINE L1 3340 3387 -2493 1 940 1638 245 49 144 chr3 46593868 46594583 -113005200 + Lx7 LINE L1 6902 7548 -148 1 940 200 139 28 0 chr3 46594584 46594620 -113005163 + (TA)n Simple_repeat Simple_repeat 1 37 0 1 940 527 245 6 24 chr3 46594623 46594790 -113004993 + Lx7 LINE L1 7527 7690 -6 1 940 297 59 0 0 chr3 46595765 46595816 -113003967 + L1_Mus4 LINE L1 6586 6636 0 1 940 1943 136 27 0 chr3 46596098 46596399 -113003384 + RLTR27 LTR ERVK 1 309 0 1 940 459 35 0 0 chr3 46596842 46596899 -113002884 + (CA)n Simple_repeat Simple_repeat 2 58 0 1 940 4530 105 9 6 chr3 46596899 46597541 -113002242 - L1_Mus3 LINE L1 -75 6563 5920 1 940 269 254 16 0 chr3 46597541 46597604 -113002179 + B4A SINE B4 133 196 -96 1 940 342 0 0 0 chr3 46597663 46597701 -113002082 + (CA)n Simple_repeat Simple_repeat 2 39 0 1 940 5435 169 26 3 chr3 46598110 46599071 -113000712 - Lx LINE L1 -1 6653 5671 1 940 8309 33 14 39 chr3 46599072 46600164 -112999619 + L1Md_A LINE L1 215 1278 -5446 1 940 25543 23 0 2 chr3 46600152 46603176 -112996607 - L1_Mm LINE L1 -218 5665 2647 1 940 7634 74 0 0 chr3 46603179 46604175 -112995608 + L1Md_T LINE L1 5587 6582 0 1 940 387 224 130 9 chr3 46604183 46604291 -112995492 + RMER15 LTR ERVL 346 466 -109 1 940 35362 18 19 16 chr3 46604295 46607911 -112991872 + L1_Mm LINE L1 1236 4918 -965 1 940 235 191 44 73 chr3 46607911 46607979 -112991804 - RMER20A LTR ERVK -265 251 186 1 940 35362 18 19 16 chr3 46607979 46608632 -112991151 + L1_Mm LINE L1 4919 5585 -298 1 940 8635 17 7 0 chr3 46608633 46609622 -112990161 + L1Md_A LINE L1 5587 6582 0 1 940 3106 185 15 5 chr3 46609622 46610224 -112989559 - L1_Mm LINE L1 -199 5684 5077 1 940 2015 168 22 0 chr3 46610219 46610588 -112989195 + L1_Mur2 LINE L1 4686 5062 -815 1 940 223 261 0 0 chr3 46610728 46610793 -112988990 + A-rich Low_complexity Low_complexity 1 65 0 1 940 6462 116 15 5 chr3 46611837 46612811 -112986972 - L1_Mus4 LINE L1 0 6636 5653 1 940 21 36 0 0 chr3 46613134 46613162 -112986621 + AT_rich Low_complexity Low_complexity 1 28 0 1 940 477 340 47 16 chr3 46614334 46614525 -112985258 - B4A SINE B4 -67 225 29 1 940 1209 101 28 6 chr3 46615115 46615295 -112984488 - B2_Mm1t SINE B2 -6 187 4 1 940 4491 260 80 18 chr3 46616546 46617067 -112982716 - Lx6 LINE L1 -176 7284 6742 1 940 224 30 0 29 chr3 46617067 46617101 -112982682 + (TTTTG)n Simple_repeat Simple_repeat 3 35 0 1 940 4491 260 80 18 chr3 46617101 46617985 -112981798 - Lx6 LINE L1 -719 6741 5792 1 940 243 0 0 0 chr3 46618006 46618033 -112981750 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 1 940 230 136 15 81 chr3 46618044 46618180 -112981603 + A-rich Low_complexity Low_complexity 1 127 0 1 940 1033 234 44 98 chr3 46618181 46618499 -112981284 - Lx6 LINE L1 -108 5772 5472 1 940 1267 51 0 0 chr3 46618513 46618670 -112981113 + BGLII LTR ERVK 1 157 -264 1 940 1593 215 82 56 chr3 46618679 46619126 -112980657 - L1_Mur3 LINE L1 -4000 1880 1415 1 940 792 0 0 0 chr3 46619126 46619214 -112980569 + (TTC)n Simple_repeat Simple_repeat 3 90 0 1 940 1593 215 82 56 chr3 46619214 46619232 -112980551 - L1_Mur3 LINE L1 -4466 1414 1402 1 940 4257 78 2 7 chr3 46619232 46619809 -112979974 - L1_Mus1 LINE L1 0 6567 5994 2 940 1593 217 77 48 chr3 46619809 46620043 -112979740 - L1_Mur3 LINE L1 -4479 1401 1153 1 940 590 39 13 0 chr3 46620046 46620123 -112979660 + (TC)n Simple_repeat Simple_repeat 2 79 0 2 940 228 244 0 49 chr3 46620165 46620247 -112979536 - L1_Mur3 LINE L1 -6526 1202 1125 1 940 21 0 0 0 chr3 46620255 46620276 -112979507 + AT_rich Low_complexity Low_complexity 1 21 0 2 940 183 319 29 14 chr3 46621716 46621786 -112977997 - MIRc SINE MIR -51 217 147 2 940 639 131 0 0 chr3 46622249 46622386 -112977397 + (TC)n Simple_repeat Simple_repeat 1 137 0 2 940 21 82 0 0 chr3 46623251 46623300 -112976483 + AT_rich Low_complexity Low_complexity 1 49 0 2 940 1626 177 4 0 chr3 46624017 46624282 -112975501 - RMER6A LTR ERVK -487 269 4 2 940 405 102 0 0 chr3 46625020 46625079 -112974704 + (TCC)n Simple_repeat Simple_repeat 2 60 0 2 940 4565 164 49 9 chr3 46625089 46625962 -112973821 - Lx2B LINE L1 -1 6999 6092 2 940 440 340 127 23 chr3 46626610 46626869 -112972914 + Lx8 LINE L1 7000 7292 -181 2 940 3813 71 6 13 chr3 46627308 46627835 -112971948 + L1Md_F2 LINE L1 6048 6570 -12 2 940 34 65 0 0 chr3 46628218 46628280 -112971503 + AT_rich Low_complexity Low_complexity 1 62 0 2 940 642 355 55 17 chr3 46630091 46630493 -112969290 - Lx8 LINE L1 -1010 6463 6047 2 940 417 280 28 94 chr3 46630605 46630708 -112969075 + Lx7 LINE L1 6590 6691 -1005 2 940 225 0 0 0 chr3 46630708 46630733 -112969050 + (TTTA)n Simple_repeat Simple_repeat 1 25 0 2 940 417 280 28 94 chr3 46630733 46630842 -112968941 + Lx7 LINE L1 6692 6788 -908 2 940 631 328 78 40 chr3 46631035 46631457 -112968326 + Lx7 LINE L1 6862 7299 -397 2 940 359 318 14 57 chr3 46632461 46632601 -112967182 + ID_B1 SINE B4 89 222 -2 2 940 2202 133 16 3 chr3 46633267 46633637 -112966146 + Lx LINE L1 6275 6649 -5 2 940 3864 55 6 8 chr3 46633641 46634139 -112965644 + L1Md_F3 LINE L1 6076 6572 -12 2 940 203 133 67 0 chr3 46634631 46634676 -112965107 + (TCTA)n Simple_repeat Simple_repeat 2 49 0 2 940 366 129 0 0 chr3 46634687 46634749 -112965034 + (TA)n Simple_repeat Simple_repeat 2 63 0 2 940 22 0 0 0 chr3 46634750 46634772 -112965011 + AT_rich Low_complexity Low_complexity 1 22 0 2 940 225 281 131 24 chr3 46635783 46635867 -112963916 + Arthur1 DNA Tip100 57 149 -3798 2 940 220 406 27 45 chr3 46636940 46637162 -112962621 + B4A SINE B4 45 262 -30 2 940 369 0 0 0 chr3 46637182 46637223 -112962560 + (CA)n Simple_repeat Simple_repeat 2 42 0 2 940 24 67 0 0 chr3 46637522 46637567 -112962216 + AT_rich Low_complexity Low_complexity 1 45 0 2 940 226 239 45 11 chr3 46637994 46638083 -112961700 - L1M5 LINE L1 -315 5864 5773 2 940 23 54 0 0 chr3 46638122 46638159 -112961624 + AT_rich Low_complexity Low_complexity 1 37 0 2 940 189 0 0 0 chr3 46638731 46638752 -112961031 + (TTG)n Simple_repeat Simple_repeat 1 21 0 2 940 643 174 81 145 chr3 46638985 46639233 -112960550 - Lx2 LINE L1 -1 6996 6765 2 940 6678 143 10 49 chr3 46639219 46640575 -112959208 - Lx2 LINE L1 -349 6648 5363 2 940 369 0 0 0 chr3 46640575 46640616 -112959167 + (TTTA)n Simple_repeat Simple_repeat 4 44 0 2 940 3427 176 12 196 chr3 46640616 46640631 -112959152 - L1_Mur2 LINE L1 -515 5362 5362 2 940 4313 81 10 5 chr3 46640631 46641238 -112958545 - L1Md_F2 LINE L1 -15 6567 5958 2 940 3427 176 12 196 chr3 46641238 46641697 -112958086 - Lx2 LINE L1 -515 5362 5003 2 940 4476 167 24 5 chr3 46641741 46642571 -112957212 + L1_Mur2 LINE L1 4191 5036 -841 2 940 395 338 12 58 chr3 46643145 46643387 -112956396 + Lx8 LINE L1 6685 6915 -558 2 940 5783 209 54 20 chr3 46643405 46644868 -112954915 - Lx5 LINE L1 -3 7047 5544 2 940 27 62 0 0 chr3 46645494 46645542 -112954241 + AT_rich Low_complexity Low_complexity 1 48 0 2 940 5921 230 50 14 chr3 46645559 46645886 -112953897 - Lx5 LINE L1 0 7050 6715 2 940 2913 79 2 20 chr3 46645886 46646287 -112953496 - MTA_Mm LTR MaLR -2 394 1 2 940 5921 223 138 16 chr3 46646287 46647335 -112952448 - Lx5 LINE L1 -336 6714 5621 2 940 588 40 0 0 chr3 46647335 46647410 -112952373 + (TG)n Simple_repeat Simple_repeat 2 76 0 2 940 2951 198 432 19 chr3 46647410 46648338 -112951445 - Lx5 LINE L1 -257 5620 4208 2 940 2422 176 165 73 chr3 46648322 46649132 -112950651 - Lx5 LINE L1 -2268 3609 2725 2 940 22 70 0 0 chr3 46649489 46649532 -112950251 + AT_rich Low_complexity Low_complexity 1 43 0 2 940 324 48 0 0 chr3 46649625 46649667 -112950116 + (TTTA)n Simple_repeat Simple_repeat 2 43 0 2 940 7900 46 1 2 chr3 46649700 46650996 -112948787 - L1Md_F2 LINE L1 -1 6581 5287 2 940 739 312 5 25 chr3 46651222 46651419 -112948364 + B3 SINE B2 1 193 -23 2 940 4331 124 15 13 chr3 46653219 46653906 -112945877 - Lx3_Mus LINE L1 0 7009 6322 2 940 1010 106 33 0 chr3 46653906 46654057 -112945726 + B2_Mm2 SINE B2 11 166 -29 2 940 22 35 0 0 chr3 46654103 46654132 -112945651 + AT_rich Low_complexity Low_complexity 1 29 0 2 940 371 385 33 0 chr3 46654401 46654523 -112945260 + RSINE1 SINE B4 23 148 -17 2 940 213 39 0 0 chr3 46654532 46654558 -112945225 + (TC)n Simple_repeat Simple_repeat 2 27 0 2 940 459 174 0 0 chr3 46654578 46654664 -112945119 + (TA)n Simple_repeat Simple_repeat 2 87 0 2 940 401 0 0 20 chr3 46654672 46654722 -112945061 + (TAGA)n Simple_repeat Simple_repeat 4 52 0 2 940 584 261 70 27 chr3 46655119 46655304 -112944479 - RMER5 LTR ERV1 -341 193 1 2 940 471 341 65 101 chr3 46655593 46656099 -112943684 + MER54A LTR ERVL 412 899 -2 2 940 24 85 0 0 chr3 46656193 46656252 -112943531 + AT_rich Low_complexity Low_complexity 1 59 0 2 940 33 25 0 0 chr3 46657173 46657213 -112942570 + AT_rich Low_complexity Low_complexity 1 40 0 2 940 526 363 31 8 chr3 46657773 46658031 -112941752 - RMER15 LTR ERVL -22 553 290 2 940 351 273 48 24 chr3 46658052 46658176 -112941607 - RMER15 LTR ERVL -446 129 3 2 940 360 0 0 0 chr3 46658346 46658386 -112941397 + (CA)n Simple_repeat Simple_repeat 2 41 0 2 940 496 75 21 21 chr3 46658386 46658481 -112941302 + (CAGAGA)n Simple_repeat Simple_repeat 6 100 0 2 940 288 183 17 0 chr3 46658951 46659011 -112940772 - Lx3A LINE L1 -692 6289 6229 2 940 2352 141 37 0 chr3 46659002 46659385 -112940398 - Lx3A LINE L1 -115 5771 5375 2 940 3174 169 33 36 chr3 46659385 46660047 -112939736 + Lx3B LINE L1 6310 6969 -4 2 940 29 0 0 0 chr3 46660056 46660085 -112939698 + AT_rich Low_complexity Low_complexity 1 29 0 2 940 419 154 84 61 chr3 46660379 46660510 -112939273 - Lx3_Mus LINE L1 0 7009 6876 2 940 795 139 0 0 chr3 46660623 46660803 -112938980 + (TATATG)n Simple_repeat Simple_repeat 1 180 0 2 117 5599 56 1 11 chr3 46661016 46661742 -112938041 + L1Md_F2 LINE L1 5864 6582 0 2 941 22 35 0 0 chr3 46662406 46662435 -112937348 + AT_rich Low_complexity Low_complexity 1 29 0 2 941 2991 61 13 5 chr3 46663120 46663513 -112936270 + MTA_Mm LTR MaLR 1 396 0 2 941 1331 45 22 11 chr3 46663932 46664114 -112935669 - L1Md_F2 LINE L1 -2 6580 6397 2 941 291 224 40 0 chr3 46664124 46664200 -112935583 - B4A SINE B4 -212 80 2 2 941 3586 299 57 38 chr3 46664365 46664486 -112935297 - Lx6 LINE L1 -16 7444 7314 2 941 708 12 0 0 chr3 46664486 46664567 -112935216 + (GAA)n Simple_repeat Simple_repeat 2 82 0 2 941 3586 299 57 38 chr3 46664567 46665692 -112934091 - Lx6 LINE L1 -147 7313 6175 2 941 311 328 0 43 chr3 46666052 46666240 -112933543 + CT-rich Low_complexity Low_complexity 1 180 0 2 941 372 171 0 0 chr3 46667745 46667821 -112931962 + L1Md_A LINE L1 6503 6578 -4 2 941 4055 256 51 63 chr3 46667963 46669036 -112930747 + Lx6 LINE L1 5984 7096 -364 2 941 225 0 0 0 chr3 46669036 46669061 -112930722 + (TA)n Simple_repeat Simple_repeat 1 25 0 2 941 4055 256 51 63 chr3 46669061 46669303 -112930480 + Lx6 LINE L1 7097 7283 -177 2 941 244 277 18 73 chr3 46669521 46669630 -112930153 - MER2 DNA MER2_type -92 253 151 2 941 1018 108 7 0 chr3 46670080 46670219 -112929564 + B1_Mus1 SINE Alu 1 140 -8 2 941 244 0 118 0 chr3 46670219 46670270 -112929513 + (CAAAC)n Simple_repeat Simple_repeat 2 58 0 2 941 597 92 0 0 chr3 46670280 46670378 -112929405 + (A)n Simple_repeat Simple_repeat 1 98 0 2 941 324 185 0 0 chr3 46670563 46670612 -112929171 + polypyrimidine Low_complexity Low_complexity 33 81 0 2 941 1199 91 6 0 chr3 46670612 46670787 -112928996 + (TCTCCC)n Simple_repeat Simple_repeat 5 180 0 2 941 324 185 0 0 chr3 46670787 46670818 -112928965 + polypyrimidine Low_complexity Low_complexity 2 32 0 2 941 1379 83 0 0 chr3 46670826 46671006 -112928777 - L1_Mm LINE L1 -310 5573 5394 2 941 1646 82 17 4 chr3 46671006 46671239 -112928544 + L1_Mus2 LINE L1 6330 6565 -1 2 941 2635 311 68 52 chr3 46671374 46671845 -112927938 - Lx5 LINE L1 -163 7297 6455 2 941 441 0 0 0 chr3 46671845 46671894 -112927889 + (TG)n Simple_repeat Simple_repeat 2 50 0 2 941 2635 276 32 135 chr3 46671894 46673424 -112926359 - Lx5 LINE L1 -596 6454 5061 2 941 1995 154 64 18 chr3 46673427 46673818 -112925965 - RLTR9E LTR ERVK 0 409 1 2 941 306 127 0 35 chr3 46673830 46673887 -112925896 - ETnERV2-int LTR ERVK -14 7392 7338 2 941 1841 190 151 11 chr3 46673891 46674366 -112925417 - RLTR13D6 LTR ERVK -360 542 1 2 941 1540 155 4 4 chr3 46674373 46674626 -112925157 - ETnERV3-int LTR ERVK -27 5781 5529 2 941 361 137 0 49 chr3 46674626 46674707 -112925076 - ETnERV3-int LTR ERVK -1172 6072 6009 2 941 1286 194 19 17 chr3 46674802 46675157 -112924626 - ETnERV2-int LTR ERVK -977 6429 6127 2 941 3959 168 39 68 chr3 46675126 46676747 -112923036 - ETnERV2-int LTR ERVK -1153 4655 2371 2 941 2685 169 51 24 chr3 46676763 46677308 -112922475 - ETnERV2-int LTR ERVK -4419 2987 2428 2 941 4342 202 38 15 chr3 46677330 46678367 -112921416 - Lx5 LINE L1 -831 5049 3990 2 941 447 154 47 28 chr3 46678372 46678479 -112921304 - Lx5 LINE L1 -2857 3020 2912 2 941 385 272 22 35 chr3 46678468 46678700 -112921083 - Lx5 LINE L1 -5764 1322 1094 2 941 4408 128 55 13 chr3 46678701 46679445 -112920338 - Lx LINE L1 -3 6651 5877 2 941 2981 150 33 0 chr3 46680169 46680656 -112919127 - L1_Mm LINE L1 -1 5882 5380 2 941 243 200 62 0 chr3 46680631 46680696 -112919087 - Lx2 LINE L1 -10 6987 6919 2 941 237 167 0 0 chr3 46680698 46680740 -112919043 - L1_Mm LINE L1 -498 5385 5344 2 941 891 228 50 14 chr3 46680720 46681000 -112918783 - Lx5 LINE L1 -6547 1181 892 2 941 519 66 0 0 chr3 46681464 46681540 -112918243 + (TC)n Simple_repeat Simple_repeat 2 77 0 2 941 21 0 0 0 chr3 46683055 46683076 -112916707 + AT_rich Low_complexity Low_complexity 1 21 0 2 941 698 233 39 75 chr3 46683608 46683667 -112916116 + Lx7 LINE L1 7417 7475 -221 2 941 189 0 0 0 chr3 46683667 46683688 -112916095 + (TTTG)n Simple_repeat Simple_repeat 4 24 0 2 941 698 233 39 75 chr3 46683688 46683907 -112915876 + Lx7 LINE L1 7476 7685 -11 2 941 379 165 0 40 chr3 46684675 46684776 -112915007 + CT-rich Low_complexity Low_complexity 4 100 0 2 941 228 227 21 74 chr3 46685233 46685328 -112914455 + GA-rich Low_complexity Low_complexity 1 90 0 2 941 258 32 0 0 chr3 46685503 46685534 -112914249 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 2 941 821 289 34 0 chr3 46686894 46687098 -112912685 + RMER1B Other Other 52 262 -804 2 941 1795 163 46 11 chr3 46687165 46687512 -112912271 + RMER6C LTR ERVK 1 359 -331 2 941 4030 179 41 49 chr3 46687643 46688541 -112911242 - RLTR13D6 LTR ERVK -46 856 2 2 941 1550 143 23 0 chr3 46688549 46688808 -112910975 + RMER6C LTR ERVK 424 688 -2 2 941 952 343 40 25 chr3 46688833 46689401 -112910382 + RMER1A Other Other 1 408 -622 2 941 402 309 108 16 chr3 46689666 46689860 -112909923 + ID_B1 SINE B4 12 223 -1 3 941 21 82 0 0 chr3 46690487 46690536 -112909247 + AT_rich Low_complexity Low_complexity 1 49 0 3 941 420 67 0 0 chr3 46690908 46690968 -112908815 + (CA)n Simple_repeat Simple_repeat 1 60 0 3 941 215 274 0 0 chr3 46692387 46692408 -112907375 + (CATA)n Simple_repeat Simple_repeat 2 22 0 3 941 204 40 0 0 chr3 46692408 46692433 -112907350 + (TG)n Simple_repeat Simple_repeat 2 26 0 3 941 215 274 0 0 chr3 46692433 46692473 -112907310 + (CATA)n Simple_repeat Simple_repeat 3 42 0 3 941 1080 84 7 0 chr3 46692766 46692909 -112906874 + B1_Mus1 SINE Alu 5 148 0 3 941 368 341 38 0 chr3 46693023 46693155 -112906628 - ID_B1 SINE B4 -7 217 81 3 941 243 88 0 0 chr3 46694999 46695033 -112904750 + (ATG)n Simple_repeat Simple_repeat 1 34 0 3 941 225 0 0 0 chr3 46695089 46695114 -112904669 + (CAG)n Simple_repeat Simple_repeat 1 25 0 3 941 215 31 31 0 chr3 46695274 46695306 -112904477 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 3 941 267 335 58 71 chr3 46698500 46698879 -112900904 + L2 LINE L2 1751 2124 -1295 3 941 539 332 70 10 chr3 46699460 46699661 -112900122 - B3A SINE B2 -3 213 1 3 941 532 288 100 13 chr3 46700806 46701105 -112898678 - ERVL-B4-int LTR ERVL -368 5346 5022 3 941 570 346 110 26 chr3 46701371 46702033 -112897750 - ERVL-B4-int LTR ERVL -4970 744 27 3 941 308 262 61 3 chr3 46702271 46702381 -112897402 - B3A SINE B2 -93 123 1 3 941 534 252 25 23 chr3 46702397 46702580 -112897203 - B3 SINE B2 -9 184 1 3 941 262 45 0 43 chr3 46702700 46702746 -112897037 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 3 941 979 67 0 7 chr3 46702802 46702937 -112896846 - L1_Mur1 LINE L1 -2828 3058 2925 3 941 5230 120 34 30 chr3 46702928 46703789 -112895994 + Lx3_Mus LINE L1 5648 6511 -498 3 941 1919 128 6 19 chr3 46703789 46704108 -112895675 + Lx3_Mus LINE L1 6665 6979 -2 3 941 1072 70 13 6 chr3 46704142 46704301 -112895482 + (GAAA)n Simple_repeat Simple_repeat 2 161 0 3 941 451 295 64 125 chr3 46704406 46704735 -112895048 + RLTR26 LTR ERVK 168 476 -166 3 941 445 347 13 26 chr3 46704966 46705117 -112894666 + RSINE1 SINE B4 15 163 -2 3 941 249 250 50 50 chr3 46707083 46707163 -112892620 - MTEa LTR MaLR -13 366 287 3 941 26 30 0 0 chr3 46707527 46707560 -112892223 + AT_rich Low_complexity Low_complexity 1 33 0 3 941 207 0 0 0 chr3 46708381 46708404 -112891379 + (CAA)n Simple_repeat Simple_repeat 2 24 0 3 941 1572 67 81 0 chr3 46708871 46709094 -112890689 + L1_Mus2 LINE L1 6324 6564 -2 3 941 276 278 11 0 chr3 46709247 46709337 -112890446 + (TA)n Simple_repeat Simple_repeat 2 92 0 3 941 29 0 0 0 chr3 46709575 46709604 -112890179 + AT_rich Low_complexity Low_complexity 1 29 0 3 941 1188 198 9 13 chr3 46709886 46710111 -112889672 + ORR1A4 LTR MaLR 98 321 -8 3 941 552 259 74 23 chr3 46710256 46710473 -112889310 + L1MA4 LINE L1 5712 5939 -361 3 941 4040 186 36 31 chr3 46710561 46710705 -112889078 + RLTR25B LTR ERVK 1 142 -886 3 941 441 0 0 0 chr3 46710705 46710754 -112889029 + (CA)n Simple_repeat Simple_repeat 2 50 0 3 941 4040 191 39 33 chr3 46710754 46711527 -112888256 + RLTR25B LTR ERVK 143 1028 0 3 941 564 131 27 44 chr3 46711620 46711803 -112887980 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 3 941 186 133 0 0 chr3 46711871 46711901 -112887882 + (TATATG)n Simple_repeat Simple_repeat 4 33 0 3 941 471 181 30 17 chr3 46711903 46712135 -112887648 + (TCTA)n Simple_repeat Simple_repeat 1 235 0 3 941 1583 204 7 0 chr3 46712210 46712499 -112887284 - ORR1A2 LTR MaLR 0 327 37 3 941 8591 182 73 21 chr3 46712500 46714363 -112885420 - ORR1A2-int LTR MaLR -2 1961 1 3 941 363 96 0 0 chr3 46714366 46714418 -112885365 - ORR1A2 LTR MaLR -3 323 272 3 941 37837 42 0 3 chr3 46714418 46720620 -112879163 - L1Md_T LINE L1 -2 6583 300 3 941 1089 240 96 11 chr3 46720622 46720904 -112878879 - MTC-int LTR MaLR -952 306 1 3 941 1546 212 64 67 chr3 46720906 46721151 -112878632 - MTC LTR MaLR -2 419 195 3 941 2230 134 8 3 chr3 46721151 46721510 -112878273 - Lx3A LINE L1 -2 6979 6619 3 941 1546 212 64 67 chr3 46721510 46721684 -112878099 - MTC LTR MaLR -227 194 1 3 941 222 91 0 0 chr3 46722310 46722343 -112877440 + (CA)n Simple_repeat Simple_repeat 2 34 0 3 941 417 39 0 0 chr3 46722343 46722393 -112877390 + (GA)n Simple_repeat Simple_repeat 2 52 0 3 941 23 68 0 0 chr3 46722544 46722588 -112877195 + AT_rich Low_complexity Low_complexity 1 44 0 3 941 270 0 0 0 chr3 46722604 46722634 -112877149 + (TA)n Simple_repeat Simple_repeat 2 31 0 3 941 272 290 137 7 chr3 46723254 46723393 -112876390 - Lx8 LINE L1 -17 7456 7300 3 941 3359 188 28 72 chr3 46723400 46724078 -112875705 + L1VL4 LINE L1 204 828 -5474 3 941 198 0 0 0 chr3 46724078 46724100 -112875683 + (CAAA)n Simple_repeat Simple_repeat 1 22 0 3 941 5152 115 11 24 chr3 46724100 46725000 -112874783 + MusHAL1 LINE L1 1 888 -1824 3 941 5172 144 92 26 chr3 46725002 46726040 -112873743 + L1Md_T LINE L1 99 1205 -5411 3 941 36150 34 0 0 chr3 46726046 46730463 -112869320 + L1Md_T LINE L1 1170 5586 -297 3 941 7980 56 0 0 chr3 46730463 46731458 -112868325 + L1Md_T LINE L1 5587 6581 -1 3 941 2596 122 10 0 chr3 46731458 46731869 -112867914 + MusHAL1 LINE L1 878 1292 -1420 3 941 6577 132 14 19 chr3 46731867 46733046 -112866737 + L1_Mus4 LINE L1 5464 6636 0 3 941 474 330 16 36 chr3 46733441 46733633 -112866150 - Lx8 LINE L1 -162 7311 7124 3 941 389 309 82 16 chr3 46733656 46733840 -112865943 + RMER5 LTR ERV1 330 525 -9 3 941 40601 15 1 0 chr3 46733840 46740230 -112859553 - L1Md_A LINE L1 -6 6576 227 3 941 543 295 6 57 chr3 46740336 46740494 -112859289 - RSINE1 SINE B4 0 165 16 3 941 24 0 0 0 chr3 46740894 46740918 -112858865 + AT_rich Low_complexity Low_complexity 1 24 0 3 941 1894 155 71 45 chr3 46741296 46741750 -112858033 + BGLII_B LTR ERVK 1 426 -15 3 941 296 168 32 14 chr3 46742122 46742194 -112857589 - Lx7 LINE L1 -3 7693 7630 3 941 336 24 0 0 chr3 46742268 46742309 -112857474 + (TAA)n Simple_repeat Simple_repeat 2 42 0 3 941 369 301 7 47 chr3 46742410 46742560 -112857223 - RLTR33 LTR ERVK -360 318 175 3 941 194 0 39 0 chr3 46744887 46744913 -112854870 + (TCTCTG)n Simple_repeat Simple_repeat 4 30 0 3 941 22 35 0 0 chr3 46745766 46745795 -112853988 + AT_rich Low_complexity Low_complexity 1 29 0 3 941 29 84 0 0 chr3 46746091 46746162 -112853621 + AT_rich Low_complexity Low_complexity 1 71 0 3 941 215 273 0 0 chr3 46746519 46746574 -112853209 + (CA)n Simple_repeat Simple_repeat 1 55 0 3 941 209 254 0 0 chr3 46747024 46747079 -112852704 + CT-rich Low_complexity Low_complexity 2 56 0 3 941 268 191 11 11 chr3 46747081 46747171 -112852612 + (TA)n Simple_repeat Simple_repeat 1 90 0 3 941 195 42 0 0 chr3 46747498 46747522 -112852261 + (TAAAA)n Simple_repeat Simple_repeat 4 27 0 3 941 459 0 0 0 chr3 46747885 46747936 -112851847 + (GAAA)n Simple_repeat Simple_repeat 2 52 0 3 941 32 43 0 0 chr3 46748689 46748735 -112851048 + AT_rich Low_complexity Low_complexity 1 46 0 3 941 569 366 65 20 chr3 46749767 46750118 -112849665 + Lx8 LINE L1 7099 7465 -8 3 941 336 368 62 42 chr3 46750302 46750543 -112849240 + LTR82A LTR ERVL 431 676 -196 3 941 687 294 93 12 chr3 46750921 46751341 -112848442 - L1M2 LINE L1 -1313 4830 4377 3 941 279 0 0 0 chr3 46751376 46751407 -112848376 + (TA)n Simple_repeat Simple_repeat 1 31 0 3 941 1579 314 57 28 chr3 46751417 46752497 -112847286 + Lx9 LINE L1 4827 5973 -1671 3 941 381 362 45 0 chr3 46752786 46752963 -112846820 + B3 SINE B2 32 216 0 3 941 22 35 0 0 chr3 46753056 46753085 -112846698 + AT_rich Low_complexity Low_complexity 1 29 0 3 941 1536 299 64 60 chr3 46753085 46753724 -112846059 - Lx6 LINE L1 -2 7458 6817 3 941 241 71 24 0 chr3 46753716 46753758 -112846025 - L1Md_F3 LINE L1 -46 6538 6496 3 941 250 150 0 0 chr3 46753772 46753812 -112845971 - Lx7 LINE L1 -852 6844 6805 3 941 549 0 0 0 chr3 46753812 46753873 -112845910 + (GA)n Simple_repeat Simple_repeat 1 61 0 3 941 5939 158 37 1 chr3 46753873 46754918 -112844865 + Lx2 LINE L1 5914 6996 -1 3 941 801 217 0 0 chr3 46754927 46755107 -112844676 + GA-rich Low_complexity Low_complexity 1 180 0 3 941 2071 286 38 23 chr3 46755208 46755220 -112844563 - Lx6 LINE L1 -710 6750 6733 3 941 1002 129 0 7 chr3 46755220 46755368 -112844415 - B1_Mus1 SINE Alu -1 147 1 3 941 2071 286 38 23 chr3 46755368 46756046 -112843737 - Lx6 LINE L1 -728 6732 6051 3 941 23 0 0 0 chr3 46756715 46756738 -112843045 + AT_rich Low_complexity Low_complexity 1 23 0 3 941 378 0 0 0 chr3 46756882 46756924 -112842859 + (TG)n Simple_repeat Simple_repeat 2 43 0 3 941 39 68 0 0 chr3 46759455 46759529 -112840254 + AT_rich Low_complexity Low_complexity 1 74 0 3 941 383 55 0 0 chr3 46759529 46759584 -112840199 - Lx LINE L1 -5 6649 6595 3 941 811 184 115 40 chr3 46760492 46760751 -112839032 + Lx3B LINE L1 6660 6976 0 3 941 21 0 0 0 chr3 46761339 46761360 -112838423 + AT_rich Low_complexity Low_complexity 1 21 0 3 941 441 236 119 24 chr3 46761363 46761489 -112838294 + RSINE1 SINE B4 23 160 -5 3 941 703 62 0 9 chr3 46761636 46761749 -112838034 - L1_Mus4 LINE L1 -7 6629 6518 3 941 5337 111 1 4 chr3 46761749 46762512 -112837271 + L1_Mus4 LINE L1 5744 6504 -132 3 941 263 363 20 108 chr3 46762513 46762717 -112837066 - B4A SINE B4 -106 186 1 3 941 233 348 86 17 chr3 46763540 46763657 -112836126 - L2a LINE L2 0 3426 3302 3 941 1479 99 9 13 chr3 46764217 46764441 -112835342 - L1Md_F2 LINE L1 0 6582 6360 3 941 952 93 50 7 chr3 46764805 46764946 -112834837 - B1_Mus1 SINE Alu 0 148 2 3 941 666 271 0 22 chr3 46765082 46765263 -112834520 - Lx9 LINE L1 -729 6915 6739 3 941 1175 292 9 3 chr3 46765280 46765599 -112834184 + Lx9 LINE L1 7035 7355 -289 3 941 3580 35 2 0 chr3 46765593 46766087 -112833696 - L1Md_F2 LINE L1 -635 5947 5453 3 941 5178 49 2 0 chr3 46766088 46766724 -112833059 + L1Md_F2 LINE L1 5936 6572 -10 3 941 373 211 311 31 chr3 46766743 46766972 -112832811 + Lx9 LINE L1 7350 7642 -2 3 941 23 0 0 0 chr3 46767308 46767331 -112832452 + AT_rich Low_complexity Low_complexity 1 23 0 3 941 21 0 0 0 chr3 46767637 46767658 -112832125 + AT_rich Low_complexity Low_complexity 1 21 0 3 941 1124 47 0 0 chr3 46767795 46767943 -112831840 + L1Md_F2 LINE L1 6432 6579 -3 3 941 213 65 0 0 chr3 46768013 46768044 -112831739 + (A)n Simple_repeat Simple_repeat 1 31 0 4 941 446 280 40 8 chr3 46768044 46768170 -112831613 + B3 SINE B2 27 156 -60 4 941 508 303 46 41 chr3 46768319 46768515 -112831268 + B3 SINE B2 15 211 -5 4 941 24 0 0 0 chr3 46769065 46769089 -112830694 + AT_rich Low_complexity Low_complexity 1 24 0 4 941 707 320 55 22 chr3 46770222 46770589 -112829194 + MTE2a LTR MaLR 1 379 0 4 941 204 143 0 0 chr3 46770870 46770912 -112828871 + (TG)n Simple_repeat Simple_repeat 2 43 0 4 941 332 355 71 71 chr3 46771094 46771306 -112828477 + B3 SINE B2 5 216 0 4 941 306 318 0 0 chr3 46772350 46772435 -112827348 + RSINE1 SINE B4 4 88 -77 4 941 261 83 0 0 chr3 46772435 46772471 -112827312 + (CAAAA)n Simple_repeat Simple_repeat 5 40 0 4 941 378 0 0 0 chr3 46772518 46772560 -112827223 + (CA)n Simple_repeat Simple_repeat 2 43 0 4 941 440 353 66 63 chr3 46772906 46773193 -112826590 + MTEa LTR MaLR 78 365 -14 4 941 339 65 0 0 chr3 46773196 46773242 -112826541 + (TA)n Simple_repeat Simple_repeat 1 46 0 4 941 23 54 0 0 chr3 46773290 46773327 -112826456 + AT_rich Low_complexity Low_complexity 1 37 0 4 941 384 88 0 0 chr3 46773411 46773468 -112826315 + (CA)n Simple_repeat Simple_repeat 2 58 0 4 941 289 330 0 0 chr3 46773690 46773778 -112826005 - MER77 LTR ERVL -516 91 4 4 941 419 347 121 66 chr3 46773778 46774238 -112825545 - MLT1F2 LTR MaLR -22 538 53 4 941 2110 223 229 13 chr3 46774669 46775412 -112824371 - RMER13B LTR ERVK 0 908 5 4 941 4300 177 11 53 chr3 46776225 46777086 -112822697 - Lx2 LINE L1 -1 6996 6173 4 941 1376 179 4 15 chr3 46777091 46777358 -112822425 + Lx2 LINE L1 5914 6177 -820 4 941 2591 56 6 3 chr3 46777681 46778023 -112821760 + MT-int LTR MaLR 683 1025 -73 4 941 189 0 0 0 chr3 46778152 46778173 -112821610 + (T)n Simple_repeat Simple_repeat 1 21 0 4 941 41077 6 0 0 chr3 46778304 46784670 -112815113 - L1Md_A LINE L1 0 6582 214 4 941 444 19 0 0 chr3 46784825 46784878 -112814905 + (CA)n Simple_repeat Simple_repeat 2 54 0 4 941 257 132 0 70 chr3 46785072 46785129 -112814654 - L1_Mm LINE L1 -4523 1360 1308 4 941 1266 105 14 19 chr3 46785130 46785343 -112814440 + L1_Mus3 LINE L1 6426 6637 -1 4 941 245 352 34 0 chr3 46785582 46785670 -112814113 - LTR16C LTR ERVL -147 342 252 4 941 1050 58 0 28 chr3 46785952 46785965 -112813818 - B1_Mm SINE Alu 0 147 138 4 941 189 0 0 0 chr3 46785965 46785986 -112813797 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 4 941 1050 58 0 28 chr3 46785986 46786115 -112813668 - B1_Mm SINE Alu -10 137 9 4 941 379 157 86 0 chr3 46786115 46786185 -112813598 - L1_Mur2 LINE L1 -372 5505 5430 4 941 3879 227 48 34 chr3 46786383 46786617 -112813166 - Lx5 LINE L1 -4 7046 6813 4 941 189 74 0 0 chr3 46786617 46786644 -112813139 + (CAGG)n Simple_repeat Simple_repeat 4 30 0 4 941 3879 227 48 34 chr3 46786644 46787299 -112812484 - Lx5 LINE L1 -238 6812 6145 4 941 16377 204 103 25 chr3 46787334 46787897 -112811886 - L1_Mur2 LINE L1 -46 5831 5262 4 941 204 40 0 0 chr3 46787897 46787922 -112811861 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 4 941 984 109 0 7 chr3 46787922 46788060 -112811723 - B1_Mus1 SINE Alu -9 139 3 4 941 16377 204 103 25 chr3 46788060 46789175 -112810608 - L1_Mur2 LINE L1 -616 5261 3841 4 941 560 14 14 0 chr3 46789175 46789244 -112810539 + (TTTC)n Simple_repeat Simple_repeat 3 72 0 4 941 16377 215 118 24 chr3 46789244 46792097 -112807686 - L1_Mur2 LINE L1 -2037 3840 898 4 942 320 73 0 35 chr3 46792759 46792816 -112806967 + (CAAAAA)n Simple_repeat Simple_repeat 2 56 0 4 942 203 216 13 51 chr3 46793248 46793326 -112806457 + T-rich Low_complexity Low_complexity 6 80 0 4 942 26 50 0 0 chr3 46794085 46794125 -112805658 + AT_rich Low_complexity Low_complexity 1 40 0 4 942 506 285 70 36 chr3 46794502 46794833 -112804950 + L1_Mur3 LINE L1 5086 5427 -453 4 942 1363 301 57 30 chr3 46794865 46795359 -112804424 - Lx6 LINE L1 -30 7430 6924 4 942 680 120 42 40 chr3 46795375 46795844 -112803939 + CT-rich Low_complexity Low_complexity 1 469 0 4 942 583 145 53 12 chr3 46795856 46796107 -112803676 + CT-rich Low_complexity Low_complexity 1 261 0 4 942 2356 271 61 12 chr3 46796107 46797093 -112802690 - Lx6 LINE L1 -566 6894 5601 4 942 1911 188 14 27 chr3 46797093 46797460 -112802323 - ORR1B1 LTR MaLR 0 394 33 4 942 2799 232 14 6 chr3 46797460 46798166 -112801617 - Lx6 LINE L1 -281 5599 4888 4 942 22 35 0 0 chr3 46798533 46798562 -112801221 + AT_rich Low_complexity Low_complexity 1 29 0 4 942 402 21 0 0 chr3 46798607 46798654 -112801129 + (TATG)n Simple_repeat Simple_repeat 4 50 0 4 942 267 268 95 35 chr3 46799814 46799930 -112799853 - B1F1 SINE Alu 0 149 27 4 942 252 157 58 46 chr3 46801053 46801140 -112798643 + (TAGA)n Simple_repeat Simple_repeat 2 89 0 4 942 234 188 48 19 chr3 46801113 46801216 -112798567 + (TA)n Simple_repeat Simple_repeat 2 107 0 4 942 219 65 0 0 chr3 46801871 46801878 -112797905 + (A)n Simple_repeat Simple_repeat 1 7 0 4 942 1034 110 0 0 chr3 46801878 46802023 -112797760 + B1_Mus1 SINE Alu 4 148 0 4 942 219 65 0 0 chr3 46802023 46802046 -112797737 + (A)n Simple_repeat Simple_repeat 1 23 0 4 942 30 27 0 0 chr3 46803369 46803406 -112796377 + AT_rich Low_complexity Low_complexity 1 37 0 4 942 231 180 61 35 chr3 46803497 46803612 -112796171 + (TA)n Simple_repeat Simple_repeat 2 119 0 4 942 777 22 0 0 chr3 46803861 46803952 -112795831 + (GAAA)n Simple_repeat Simple_repeat 3 93 0 4 942 821 120 24 18 chr3 46803953 46804122 -112795661 + GA-rich Low_complexity Low_complexity 1 170 0 4 942 21 0 0 75 chr3 46805939 46805979 -112793804 + AT_rich Low_complexity Low_complexity 1 37 0 4 942 4045 139 44 3 chr3 46806062 46806600 -112793183 - L1_Mm LINE L1 -78 5805 5249 4 942 575 84 11 0 chr3 46806600 46806695 -112793088 + (TCTA)n Simple_repeat Simple_repeat 4 99 0 4 942 4045 139 44 3 chr3 46806695 46806835 -112792948 - L1_Mm LINE L1 -635 5248 5100 4 942 5813 108 3 3 chr3 46806835 46807681 -112792102 + L1_Mus3 LINE L1 5791 6636 -2 4 942 329 43 0 21 chr3 46807806 46807854 -112791929 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 4 942 561 55 0 0 chr3 46809561 46809634 -112790149 + (TA)n Simple_repeat Simple_repeat 2 74 0 4 942 240 35 0 0 chr3 46809687 46809716 -112790067 + (TG)n Simple_repeat Simple_repeat 2 30 0 4 942 182 37 37 0 chr3 46809716 46809742 -112790041 + (TA)n Simple_repeat Simple_repeat 1 28 0 4 942 6587 161 51 13 chr3 46809848 46811475 -112788308 - Lx LINE L1 -2 6995 5288 4 942 734 204 0 18 chr3 46811486 46811651 -112788132 - Lx2 LINE L1 0 6997 6836 4 942 589 228 0 0 chr3 46811651 46811778 -112788005 - Lx LINE L1 -974 4903 4777 4 942 244 344 88 101 chr3 46812226 46812543 -112787240 + MER67D LTR ERV1 83 395 -119 4 942 249 83 0 0 chr3 46812780 46812816 -112786967 + (CAGA)n Simple_repeat Simple_repeat 2 37 0 4 942 22 0 0 0 chr3 46814073 46814095 -112785688 + AT_rich Low_complexity Low_complexity 1 22 0 4 942 45 45 0 0 chr3 46815979 46816045 -112783738 + AT_rich Low_complexity Low_complexity 1 66 0 4 942 1065 286 53 48 chr3 46816516 46816949 -112782834 - Lx6 LINE L1 -65 7395 6961 4 942 696 164 146 0 chr3 46816946 46817111 -112782672 + Lx4A LINE L1 5896 6084 -974 4 942 738 188 0 0 chr3 46817114 46817247 -112782536 + Lx4A LINE L1 6355 6487 -571 4 942 1149 51 0 6 chr3 46817247 46817405 -112782378 - L1Md_F2 LINE L1 0 6582 6426 4 942 15289 273 16 10 chr3 46817407 46818226 -112781557 - IAP-d-int LTR ERVK -2102 4440 3625 4 942 4594 41 3 5 chr3 46818226 46818795 -112780988 + L1Md_F2 LINE L1 6013 6580 -2 4 942 15289 273 16 10 chr3 46818795 46822366 -112777417 - IAP-d-int LTR ERVK -2918 3624 22 4 942 460 231 21 43 chr3 46822377 46822393 -112777390 + Lx4A LINE L1 6871 6887 -171 4 942 1164 222 47 58 chr3 46822393 46822756 -112777027 - RLTR10D LTR ERVK 0 359 1 4 942 460 208 35 74 chr3 46822756 46822949 -112776834 + Lx4A LINE L1 6888 7018 -40 4 942 34 24 0 0 chr3 46822957 46822998 -112776785 + AT_rich Low_complexity Low_complexity 1 41 0 4 942 217 300 28 14 chr3 46823902 46823973 -112775810 + L2a LINE L2 3343 3414 -12 4 942 449 247 39 0 chr3 46824056 46824190 -112775593 + B1_Mus1 SINE Alu 9 150 0 4 942 405 0 0 0 chr3 46824201 46824246 -112775537 + (CATA)n Simple_repeat Simple_repeat 2 46 0 4 942 378 0 0 0 chr3 46825717 46825759 -112774024 + (CA)n Simple_repeat Simple_repeat 1 42 0 4 942 279 251 211 10 chr3 46826238 46826447 -112773336 + L1MC LINE L1 5138 5388 -758 4 942 388 201 46 13 chr3 46826671 46826822 -112772961 - Lx9 LINE L1 -1 7643 7488 4 942 1522 235 15 82 chr3 46826829 46827191 -112772592 + ORR1C1 LTR MaLR 1 338 -40 4 942 1167 217 95 54 chr3 46827191 46827400 -112772383 + RMER17C LTR ERVK 3 212 -198 4 942 663 57 0 0 chr3 46827400 46827488 -112772295 + (TC)n Simple_repeat Simple_repeat 2 89 0 4 942 1167 217 95 54 chr3 46827488 46827667 -112772116 + RMER17C LTR ERVK 213 406 -4 4 942 1522 235 15 82 chr3 46827667 46827707 -112772076 + ORR1C1 LTR MaLR 339 376 -2 4 942 200 35 35 0 chr3 46827709 46827738 -112772045 + (CA)n Simple_repeat Simple_repeat 1 30 0 4 942 265 186 157 0 chr3 46827743 46827813 -112771970 - Lx9 LINE L1 -192 7452 7372 4 942 394 338 81 0 chr3 46827870 46828006 -112771777 + MTEa LTR MaLR 1 147 -232 4 942 290 333 112 11 chr3 46828006 46828058 -112771725 + MT2A LTR ERVL 1 207 -326 4 942 1098 76 0 7 chr3 46829043 46829189 -112770594 + B1_Mus2 SINE Alu 2 146 -1 4 942 227 93 23 0 chr3 46829194 46829237 -112770546 + (CAAA)n Simple_repeat Simple_repeat 1 44 0 4 942 22 0 0 0 chr3 46830622 46830644 -112769139 + AT_rich Low_complexity Low_complexity 1 22 0 4 942 1407 208 57 23 chr3 46831129 46831479 -112768304 + Lx2B LINE L1 6631 6992 -8 4 942 1242 100 0 0 chr3 46831496 46831676 -112768107 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 4 942 513 0 0 0 chr3 46831677 46831734 -112768049 + (GGAA)n Simple_repeat Simple_repeat 3 59 0 4 942 314 184 0 13 chr3 46831879 46831956 -112767827 + CT-rich Low_complexity Low_complexity 3 78 0 4 942 198 103 0 0 chr3 46831973 46832002 -112767781 + (TCTCTG)n Simple_repeat Simple_repeat 2 30 0 4 942 23 33 0 0 chr3 46834337 46834367 -112765416 + AT_rich Low_complexity Low_complexity 1 30 0 4 942 28 48 0 0 chr3 46836284 46836326 -112763457 + AT_rich Low_complexity Low_complexity 1 42 0 4 942 249 62 0 0 chr3 46836502 46836534 -112763249 - MusHAL1 LINE L1 -1136 1576 1545 4 942 2889 52 2 65 chr3 46836540 46836952 -112762831 + L1_Mus2 LINE L1 6178 6563 -3 4 942 26 50 0 0 chr3 46837025 46837065 -112762718 + AT_rich Low_complexity Low_complexity 1 40 0 4 942 32 26 0 0 chr3 46837174 46837213 -112762570 + AT_rich Low_complexity Low_complexity 1 39 0 4 942 260 298 43 111 chr3 46837342 46837459 -112762324 + PB1D10 SINE Alu 2 110 -7 5 942 382 290 60 15 chr3 46837671 46837804 -112761979 + B1F1 SINE Alu 10 148 -1 5 942 29490 128 11 6 chr3 46837919 46844036 -112755747 - L1_Mus2 LINE L1 0 6566 415 5 942 1450 190 43 50 chr3 46844292 46844672 -112755111 + ORR1A3 LTR MaLR 1 386 -8 5 942 679 82 0 0 chr3 46844716 46844813 -112754970 - L1_Mus1 LINE L1 0 6567 6471 5 942 350 206 0 0 chr3 46844871 46844963 -112754820 - Lx9 LINE L1 -76 7568 7477 5 942 242 262 25 0 chr3 46844963 46845043 -112754740 + (TA)n Simple_repeat Simple_repeat 2 83 0 5 942 464 203 113 0 chr3 46845069 46845202 -112754581 - Lx9 LINE L1 -144 7500 7353 5 942 425 326 114 23 chr3 46845821 46846085 -112753698 + ORR1D1 LTR MaLR 1 288 -86 5 942 523 160 238 8 chr3 46846086 46846212 -112753571 - URR1B DNA MER1_type 0 225 71 5 942 236 377 13 76 chr3 46846340 46846443 -112753340 + MTEb LTR MaLR 121 213 -166 5 942 279 0 0 0 chr3 46846443 46846474 -112753309 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 5 942 236 377 13 76 chr3 46846474 46846528 -112753255 + MTEb LTR MaLR 214 267 -112 5 942 437 347 49 57 chr3 46846590 46846853 -112752930 + MTE-int LTR MaLR 1 261 -1319 5 942 217 25 100 0 chr3 46847018 46847058 -112752725 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 5 942 259 217 63 45 chr3 46847264 46847375 -112752408 + RMER3D-int LTR ERVK 1092 1204 -1638 5 942 1439 213 16 6 chr3 46847444 46847756 -112752027 + MYSERV16_I-int LTR ERVK 1 315 -2011 5 942 990 176 34 0 chr3 46847748 46847952 -112751831 + MYSERV16_I-int LTR ERVK 2041 2251 -75 5 942 5271 263 40 45 chr3 46848116 46848628 -112751155 - Lx6 LINE L1 -223 7237 6739 5 942 203 0 37 0 chr3 46848628 46848655 -112751128 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 5 942 5271 243 30 26 chr3 46848655 46850746 -112749037 - Lx6 LINE L1 -722 6738 4635 5 942 210 37 0 0 chr3 46850746 46850773 -112749010 + (TTG)n Simple_repeat Simple_repeat 2 28 0 5 942 5250 234 48 41 chr3 46850773 46852592 -112747191 - Lx6 LINE L1 -1240 4643 3051 5 942 782 182 6 0 chr3 46852605 46852764 -112747019 + CT-rich Low_complexity Low_complexity 1 160 0 5 942 403 251 10 89 chr3 46852764 46852938 -112746845 - Lx6 LINE L1 -2786 3091 2940 5 942 351 0 0 0 chr3 46852938 46852977 -112746806 + (TG)n Simple_repeat Simple_repeat 2 40 0 5 942 403 248 11 98 chr3 46852977 46853014 -112746769 - Lx6 LINE L1 -2941 2939 2904 5 942 220 295 0 0 chr3 46855653 46855714 -112744069 + (CCG)n Simple_repeat Simple_repeat 2 62 0 5 942 851 222 52 116 chr3 46855733 46855898 -112743885 - Lx6 LINE L1 -2980 2900 2734 5 942 186 71 0 0 chr3 46855898 46855926 -112743857 + (GTTTG)n Simple_repeat Simple_repeat 2 29 0 5 942 851 222 52 116 chr3 46855926 46856182 -112743601 - Lx6 LINE L1 -3147 2733 2506 5 942 400 378 28 37 chr3 46856185 46856402 -112743381 - ID_B1 SINE B4 -4 220 6 5 942 702 271 79 39 chr3 46856774 46857176 -112742607 - MT2A LTR ERVL -80 453 6 5 942 189 0 0 0 chr3 46857252 46857273 -112742510 + (TTAG)n Simple_repeat Simple_repeat 3 23 0 5 942 26 30 0 0 chr3 46857738 46857771 -112742012 + AT_rich Low_complexity Low_complexity 1 33 0 5 942 195 42 0 0 chr3 46857779 46857803 -112741980 + (TG)n Simple_repeat Simple_repeat 2 25 0 5 942 4613 36 0 0 chr3 46857876 46858424 -112741359 + L1Md_A LINE L1 6034 6581 -1 5 942 360 314 0 28 chr3 46859432 46859540 -112740243 + LTR16B2 LTR ERVL 139 243 -219 5 942 287 393 0 8 chr3 46859555 46859678 -112740105 + B4A SINE B4 19 140 -152 5 942 803 285 85 8 chr3 46859678 46859926 -112739857 - MT2A LTR ERVL -97 436 170 5 942 2691 60 25 3 chr3 46859926 46860293 -112739490 - L1_Mus1 LINE L1 -459 6108 5734 5 942 3514 53 0 2 chr3 46860293 46860728 -112739055 + L1_Mus1 LINE L1 6133 6566 -1 5 942 414 297 58 17 chr3 46860741 46860861 -112738922 - MT2A LTR ERVL -357 176 52 5 942 201 167 0 0 chr3 46860994 46861030 -112738753 + T-rich Low_complexity Low_complexity 3 38 0 5 942 1633 244 35 13 chr3 46861064 46861611 -112738172 + Lx5 LINE L1 3917 4475 -1405 5 942 234 0 0 0 chr3 46861695 46861721 -112738062 + (A)n Simple_repeat Simple_repeat 1 26 0 5 942 270 376 17 0 chr3 46861989 46862106 -112737677 + RSINE1 SINE B4 6 124 -41 5 942 210 203 33 33 chr3 46862187 46862248 -112737535 + (TATG)n Simple_repeat Simple_repeat 3 63 0 5 942 21 0 0 0 chr3 46862408 46862429 -112737354 + AT_rich Low_complexity Low_complexity 1 21 0 5 942 26 64 0 0 chr3 46863647 46863694 -112736089 + AT_rich Low_complexity Low_complexity 1 47 0 5 942 3116 261 41 34 chr3 46863699 46865124 -112734659 + Lx5 LINE L1 5523 6925 -133 5 942 24 32 0 0 chr3 46865530 46865561 -112734222 + AT_rich Low_complexity Low_complexity 1 31 0 5 942 317 298 99 63 chr3 46865891 46866113 -112733670 + Lx5 LINE L1 6814 7043 -7 5 942 692 71 0 10 chr3 46866554 46866654 -112733129 + (TTTC)n Simple_repeat Simple_repeat 1 99 0 5 942 207 0 0 0 chr3 46866800 46866823 -112732960 + (T)n Simple_repeat Simple_repeat 1 23 0 5 942 775 255 106 36 chr3 46867317 46867370 -112732413 - Lx9 LINE L1 -23 7621 7567 5 942 3580 145 15 88 chr3 46867370 46868180 -112731603 - RMER17A LTR ERVK 0 751 1 5 942 775 255 106 36 chr3 46868180 46868224 -112731559 - Lx9 LINE L1 -78 7566 7531 5 942 210 71 0 0 chr3 46868224 46868252 -112731531 + (TTA)n Simple_repeat Simple_repeat 1 28 0 5 942 775 255 106 36 chr3 46868252 46868483 -112731300 - Lx9 LINE L1 -114 7530 7269 5 942 281 185 31 0 chr3 46868884 46868949 -112730834 - Lx9 LINE L1 -226 7418 7352 5 942 2610 291 20 28 chr3 46868942 46869777 -112730006 + Lx9 LINE L1 6534 7362 -282 5 942 22 35 0 0 chr3 46870020 46870049 -112729734 + AT_rich Low_complexity Low_complexity 1 29 0 5 942 27996 6 0 0 chr3 46870951 46874817 -112724966 - L1Md_A LINE L1 0 6582 2715 5 942 285 339 0 0 chr3 46874861 46874970 -112724813 + Lx7 LINE L1 6987 7095 -601 5 942 612 134 12 25 chr3 46875853 46876014 -112723769 + (TA)n Simple_repeat Simple_repeat 1 159 0 5 942 16800 174 79 50 chr3 46876189 46882100 -112717683 + Lx LINE L1 565 6654 0 5 942 1822 151 32 32 chr3 46882301 46882643 -112717140 + Lx2A1 LINE L1 6658 6999 -9 5 942 325 348 66 6 chr3 46882739 46882921 -112716862 + Lx9 LINE L1 7246 7438 -206 5 942 186 103 0 0 chr3 46882959 46882988 -112716795 + (CATA)n Simple_repeat Simple_repeat 4 32 0 5 942 325 339 152 0 chr3 46883244 46883480 -112716303 - MER110A LTR ERV1 -96 372 101 5 942 4139 39 2 0 chr3 46883875 46884369 -112715414 + L1Md_F2 LINE L1 6085 6579 -3 5 942 23 78 0 0 chr3 46884896 46884947 -112714836 + AT_rich Low_complexity Low_complexity 1 51 0 5 942 25 0 0 0 chr3 46885143 46885168 -112714615 + AT_rich Low_complexity Low_complexity 1 25 0 5 942 28 48 0 0 chr3 46886494 46886536 -112713247 + AT_rich Low_complexity Low_complexity 1 42 0 5 942 4190 116 71 3 chr3 46886850 46887516 -112712267 - L1_Mus3 LINE L1 -3 6635 5925 5 942 1041 100 0 0 chr3 46887547 46887687 -112712096 + B1_Mus1 SINE Alu 3 142 -6 5 942 224 59 29 0 chr3 46887689 46887723 -112712060 + (TAAA)n Simple_repeat Simple_repeat 1 35 0 5 942 427 281 8 32 chr3 46888300 46888425 -112711358 - Lx8 LINE L1 -767 6706 6585 5 942 737 296 5 5 chr3 46889878 46890085 -112709698 + B3 SINE B2 5 211 -5 5 942 4345 260 50 16 chr3 46890096 46891214 -112708569 - Lx6 LINE L1 0 7460 6300 5 942 2041 151 6 11 chr3 46891214 46891575 -112708208 + RLTR15 LTR ERVK 1 359 0 5 942 4345 260 50 16 chr3 46891575 46891605 -112708178 - Lx6 LINE L1 -1161 6299 6272 5 942 708 220 147 0 chr3 46891597 46891774 -112708009 + L1_Mur3 LINE L1 5322 5524 -356 5 942 1150 236 140 70 chr3 46891818 46892342 -112707441 - RLTR20B3 LTR ERVK -13 564 20 5 942 2765 211 47 48 chr3 46892360 46893468 -112706315 - L1_Mur3 LINE L1 -3932 1948 860 5 942 359 311 86 40 chr3 46893463 46893782 -112706001 - L1_Mur3 LINE L1 -7095 633 247 5 942 23 78 0 0 chr3 46895648 46895699 -112704084 + AT_rich Low_complexity Low_complexity 1 51 0 5 942 1141 89 5 27 chr3 46896061 46896246 -112703537 + L1_Mus1 LINE L1 6387 6567 0 5 942 25 0 0 0 chr3 46896246 46896271 -112703512 + AT_rich Low_complexity Low_complexity 1 25 0 5 942 25 31 0 0 chr3 46896562 46896594 -112703189 + AT_rich Low_complexity Low_complexity 1 32 0 5 942 581 234 85 8 chr3 46896849 46896978 -112702805 - B1_Mur2 SINE Alu -1 148 10 5 942 3797 152 23 69 chr3 46897548 46898319 -112701464 - Lx2B LINE L1 0 7000 6265 5 942 463 188 8 15 chr3 46898423 46898471 -112701312 + (TCTCTG)n Simple_repeat Simple_repeat 5 50 0 5 942 979 32 25 25 chr3 46898471 46898631 -112701152 + (TTCTC)n Simple_repeat Simple_repeat 5 164 0 5 942 463 188 8 15 chr3 46898631 46898712 -112701071 + (TCTCTG)n Simple_repeat Simple_repeat 1 82 0 5 942 709 130 0 36 chr3 46898744 46898856 -112700927 - RLTR15 LTR ERVK 0 359 252 5 942 234 276 92 0 chr3 46898853 46898929 -112700854 - RLTR15 LTR ERVK -274 85 3 5 942 450 79 0 0 chr3 46898992 46899055 -112700728 + (TG)n Simple_repeat Simple_repeat 2 64 0 5 942 1345 45 11 0 chr3 46900780 46900957 -112698826 + (TTTC)n Simple_repeat Simple_repeat 1 179 0 5 942 2565 76 42 0 chr3 46900957 46901352 -112698431 - L1_Mus2 LINE L1 0 6566 6197 5 942 333 329 51 0 chr3 46901710 46901847 -112697936 + B1F SINE Alu 6 149 0 5 942 234 0 0 0 chr3 46902283 46902309 -112697474 + (TAAA)n Simple_repeat Simple_repeat 4 29 0 5 942 1941 240 14 5 chr3 46902309 46902731 -112697052 - RMER1A Other Other -114 916 491 5 942 246 209 2 0 chr3 46902731 46902786 -112696997 - ORR1A4 LTR MaLR -159 235 128 5 942 522 46 0 0 chr3 46902965 46903030 -112696753 + (TA)n Simple_repeat Simple_repeat 1 65 0 5 942 373 231 43 29 chr3 46903041 46903179 -112696604 + L1MA5 LINE L1 6152 6291 -9 5 942 239 354 62 23 chr3 46905464 46905594 -112694189 + MER77 LTR ERVL 82 216 -391 5 942 231 351 121 38 chr3 46905665 46905822 -112693961 + MER77 LTR ERVL 167 336 -271 5 942 183 227 20 10 chr3 46906207 46906305 -112693478 + (TA)n Simple_repeat Simple_repeat 2 100 0 5 942 236 208 69 0 chr3 46906333 46906405 -112693378 - L1MC4a LINE L1 -1384 6498 6422 5 942 636 165 8 0 chr3 46906427 46906554 -112693229 - Lx3_Mus LINE L1 0 7009 6882 5 942 5908 97 16 2 chr3 46906556 46907397 -112692386 - L1_Mur1 LINE L1 -40 5846 4995 5 942 9511 126 63 14 chr3 46907389 46909540 -112690243 - L1_Mur1 LINE L1 -3151 2735 210 5 942 2269 210 28 47 chr3 46909724 46909784 -112689999 - RLTR20C LTR ERVK -35 499 445 5 942 453 50 0 0 chr3 46909784 46909844 -112689939 + (CA)n Simple_repeat Simple_repeat 1 60 0 5 942 2269 210 28 47 chr3 46909844 46910292 -112689491 - RLTR20C LTR ERVK -90 444 1 5 942 287 115 0 32 chr3 46910292 46910355 -112689428 + (TAGA)n Simple_repeat Simple_repeat 4 64 0 5 942 2327 274 104 15 chr3 46910405 46910667 -112689116 + Lx7 LINE L1 5607 5878 -1818 5 942 1926 145 28 3 chr3 46910667 46910985 -112688798 + ORR1A2 LTR MaLR 2 327 0 5 942 2327 274 104 15 chr3 46910985 46911570 -112688213 + Lx7 LINE L1 5879 6529 -1167 5 942 1689 274 81 31 chr3 46911556 46912099 -112687684 + Lx6 LINE L1 6714 7283 -177 5 942 620 310 203 40 chr3 46912685 46913065 -112686718 + RMER15 LTR ERVL 29 470 -105 6 942 933 113 0 0 chr3 46913066 46913207 -112686576 + (GGA)n Simple_repeat Simple_repeat 3 143 0 6 942 259 233 27 27 chr3 46913207 46913282 -112686501 + GA-rich Low_complexity Low_complexity 2 76 0 6 942 512 376 29 10 chr3 46915094 46915298 -112684485 + MTE2b LTR MaLR 97 304 -75 6 942 216 0 0 0 chr3 46915354 46915378 -112684405 + (TA)n Simple_repeat Simple_repeat 2 25 0 6 942 22 70 0 0 chr3 46915569 46915612 -112684171 + AT_rich Low_complexity Low_complexity 1 43 0 6 942 22 0 0 0 chr3 46916360 46916382 -112683401 + AT_rich Low_complexity Low_complexity 1 22 0 6 942 588 101 46 0 chr3 46917072 46917181 -112682602 + (TTCC)n Simple_repeat Simple_repeat 4 117 0 6 942 1156 81 0 17 chr3 46917190 46917366 -112682417 + (TTTC)n Simple_repeat Simple_repeat 2 174 0 6 942 25733 117 25 10 chr3 46917377 46922077 -112677706 - Lx3A LINE L1 -2 6979 2211 6 942 4953 63 0 0 chr3 46922077 46922698 -112677085 - L1Md_F2 LINE L1 -12 6570 5950 6 942 25733 109 22 10 chr3 46922698 46923116 -112676667 - Lx3A LINE L1 -3676 2210 1785 6 942 435 19 0 0 chr3 46923381 46923433 -112676350 + (TG)n Simple_repeat Simple_repeat 1 52 0 6 942 456 51 0 0 chr3 46923498 46923557 -112676226 + (TG)n Simple_repeat Simple_repeat 2 60 0 6 943 186 176 0 0 chr3 46923781 46923832 -112675951 + T-rich Low_complexity Low_complexity 1 51 0 6 943 823 259 56 35 chr3 46924694 46924982 -112674801 + Lx6 LINE L1 5987 6280 -1180 6 943 836 275 145 3 chr3 46924977 46925280 -112674503 + Lx6 LINE L1 6518 6863 -597 6 943 1476 324 19 27 chr3 46925295 46925780 -112674003 + Lx6 LINE L1 6955 7435 -25 6 943 654 199 68 0 chr3 46925961 46926107 -112673676 - URR1B DNA MER1_type -8 217 62 6 943 384 336 0 28 chr3 46926204 46926345 -112673438 + Lx6 LINE L1 7288 7424 -36 6 943 1337 105 0 5 chr3 46926868 46927069 -112672714 - L1_Mus4 LINE L1 -6 6630 6431 6 943 9577 167 55 26 chr3 46927339 46928792 -112670991 + L1_Mur2 LINE L1 551 2064 -3813 6 943 408 40 0 0 chr3 46928792 46928842 -112670941 + (CCA)n Simple_repeat Simple_repeat 1 50 0 6 943 9577 143 26 35 chr3 46928842 46929853 -112669930 + L1_Mur2 LINE L1 2065 3058 -2819 6 943 4315 163 51 3 chr3 46929861 46930628 -112669155 + Lx4A LINE L1 6253 7056 -2 6 943 25 51 0 0 chr3 46930628 46930667 -112669116 + AT_rich Low_complexity Low_complexity 1 39 0 6 943 219 183 37 0 chr3 46933235 46933317 -112666466 + (TCTA)n Simple_repeat Simple_repeat 2 86 0 6 943 2177 225 28 108 chr3 46933321 46933968 -112665815 - RMER6C LTR ERVK 0 690 96 6 943 477 285 19 50 chr3 46933952 46934111 -112665672 - RMER6C LTR ERVK -534 156 3 6 943 4809 100 4 3 chr3 46934172 46934872 -112664911 + L1_Mm LINE L1 5034 5734 -149 6 943 21 82 0 0 chr3 46935028 46935077 -112664706 + AT_rich Low_complexity Low_complexity 1 49 0 6 943 234 317 171 5 chr3 46935559 46935746 -112664037 + L2a LINE L2 3189 3406 -20 6 943 237 33 0 0 chr3 46937184 46937214 -112662569 + (GTTTG)n Simple_repeat Simple_repeat 5 34 0 6 943 206 156 22 0 chr3 46937214 46937259 -112662524 + T-rich Low_complexity Low_complexity 1 46 0 6 943 881 102 6 87 chr3 46937259 46937420 -112662363 - B1_Mus1 SINE Alu 0 148 1 6 943 21 0 0 0 chr3 46937914 46937935 -112661848 + AT_rich Low_complexity Low_complexity 1 21 0 6 943 1449 265 94 22 chr3 46938080 46938581 -112661202 + Lx7 LINE L1 6988 7524 -172 6 943 413 36 18 0 chr3 46938582 46938637 -112661146 + (TTA)n Simple_repeat Simple_repeat 1 56 0 6 943 251 289 29 0 chr3 46938646 46938750 -112661033 + Lx7 LINE L1 7586 7692 -4 6 943 189 107 0 0 chr3 46940228 46940256 -112659527 + (TAAA)n Simple_repeat Simple_repeat 3 30 0 6 943 279 244 35 62 chr3 46940772 46940916 -112658867 + L1MA10 LINE L1 6154 6293 -41 6 943 21 36 0 0 chr3 46941230 46941258 -112658525 + AT_rich Low_complexity Low_complexity 1 28 0 6 943 253 210 48 0 chr3 46941354 46941416 -112658367 + LTR82A LTR ERVL 230 294 -578 6 943 21 36 0 0 chr3 46942061 46942089 -112657694 + AT_rich Low_complexity Low_complexity 1 28 0 6 943 3147 35 38 0 chr3 46942593 46942989 -112656794 - IAPLTR2a LTR ERVK 0 411 1 6 943 916 327 40 16 chr3 46943418 46943794 -112655989 - Lx8 LINE L1 -521 6952 6568 6 943 5507 200 8 7 chr3 46945449 46946544 -112653239 - Lx4A LINE L1 -2 7056 5961 6 943 343 311 106 59 chr3 46946787 46947043 -112652740 + RMER2 LTR ERV1 300 567 0 6 943 366 103 17 0 chr3 46947050 46947108 -112652675 - Lx4A LINE L1 -1109 5949 5891 6 943 487 0 32 0 chr3 46947108 46947171 -112652612 + (TA)n Simple_repeat Simple_repeat 2 66 0 6 943 8723 148 11 1 chr3 46947219 46948909 -112650874 + Lx2 LINE L1 5275 6979 -18 6 943 7197 198 45 104 chr3 46948937 46951865 -112647918 - Lx2B LINE L1 -653 6347 3656 6 943 1277 19 0 13 chr3 46951865 46952022 -112647761 + (TCTCCC)n Simple_repeat Simple_repeat 3 157 0 6 943 7197 202 35 137 chr3 46952022 46952198 -112647585 - Lx2B LINE L1 -2222 3655 3473 6 943 180 0 0 0 chr3 46952282 46952302 -112647481 + (CATTA)n Simple_repeat Simple_repeat 5 24 0 6 943 8274 26 1 8 chr3 46952871 46954210 -112645573 - L1Md_A LINE L1 0 6582 5271 6 943 26 0 0 0 chr3 46954505 46954531 -112645252 + AT_rich Low_complexity Low_complexity 1 26 0 6 943 24 53 0 0 chr3 46954586 46954624 -112645159 + AT_rich Low_complexity Low_complexity 1 38 0 6 943 21 36 0 0 chr3 46955335 46955363 -112644420 + AT_rich Low_complexity Low_complexity 1 28 0 6 943 24 53 0 0 chr3 46955678 46955716 -112644067 + AT_rich Low_complexity Low_complexity 1 38 0 6 943 26 64 0 0 chr3 46956141 46956188 -112643595 + AT_rich Low_complexity Low_complexity 1 47 0 6 943 318 247 0 0 chr3 46956322 46956415 -112643368 + (TG)n Simple_repeat Simple_repeat 2 94 0 6 943 422 205 39 0 chr3 46956432 46956588 -112643195 + (TATATG)n Simple_repeat Simple_repeat 3 164 0 6 943 678 241 36 5 chr3 46956618 46956810 -112642973 + Lx9 LINE L1 7258 7455 -189 6 943 26 30 0 0 chr3 46957125 46957158 -112642625 + AT_rich Low_complexity Low_complexity 1 33 0 6 943 225 195 0 0 chr3 46957946 46957987 -112641796 + (TATG)n Simple_repeat Simple_repeat 4 44 0 6 943 273 29 0 0 chr3 46957999 46958033 -112641750 + (TG)n Simple_repeat Simple_repeat 2 35 0 6 943 605 330 24 44 chr3 46958038 46958333 -112641450 - B4A SINE B4 0 292 4 6 943 1113 37 0 0 chr3 46958788 46958924 -112640859 + B1_Mus2 SINE Alu 2 137 -10 6 943 245 51 0 25 chr3 46958925 46958965 -112640818 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 6 943 7343 98 12 2 chr3 46959352 46960911 -112638872 - L1_Mus1 LINE L1 0 6567 4992 6 943 4825 107 4 31 chr3 46960911 46961652 -112638131 - L1Md_F2 LINE L1 -2 6580 5860 6 943 13072 123 13 13 chr3 46961652 46963954 -112635829 - L1_Mus1 LINE L1 -2530 3353 1080 6 943 2311 230 68 38 chr3 46963960 46964823 -112634960 - L1Md_F LINE L1 -5433 1108 204 6 943 207 0 0 0 chr3 46964873 46964896 -112634887 + (TTTG)n Simple_repeat Simple_repeat 1 23 0 6 943 254 50 25 0 chr3 46965051 46965091 -112634692 + (CAAA)n Simple_repeat Simple_repeat 2 42 0 6 943 477 304 6 0 chr3 46965825 46965983 -112633800 - Lx8 LINE L1 -562 6911 6753 6 943 28 29 0 0 chr3 46965998 46966033 -112633750 + AT_rich Low_complexity Low_complexity 1 35 0 6 943 531 0 0 0 chr3 46967595 46967654 -112632129 + (TA)n Simple_repeat Simple_repeat 2 60 0 6 943 243 130 41 61 chr3 46968208 46968257 -112631526 - B1_Mur4 SINE Alu 0 150 103 6 943 234 200 0 0 chr3 46968252 46968297 -112631486 - B1F2 SINE Alu -93 56 12 6 943 2703 91 61 0 chr3 46969356 46969763 -112630020 - Lx3_Mus LINE L1 -13 6996 6565 6 943 5169 106 59 33 chr3 46969763 46969962 -112629821 + Lx3A LINE L1 5706 5903 -1078 6 943 279 0 0 0 chr3 46969962 46969993 -112629790 + (CAA)n Simple_repeat Simple_repeat 3 33 0 6 943 5169 106 59 33 chr3 46969993 46970640 -112629143 + Lx3A LINE L1 5904 6574 -407 6 943 994 136 6 11 chr3 46970643 46970822 -112628961 + CT-rich Low_complexity Low_complexity 2 179 0 6 943 224 308 13 13 chr3 46970902 46970981 -112628802 + GA-rich Low_complexity Low_complexity 2 80 0 6 943 1048 235 75 35 chr3 46971159 46971441 -112628342 + ORR1D2 LTR MaLR 1 293 -77 6 943 222 118 0 0 chr3 46971445 46971479 -112628304 + (TAA)n Simple_repeat Simple_repeat 3 36 0 6 943 282 333 51 32 chr3 46971511 46971652 -112628131 + B3A SINE B2 60 205 -11 6 943 384 22 0 0 chr3 46972809 46972854 -112626929 + (T)n Simple_repeat Simple_repeat 1 45 0 6 943 201 74 0 0 chr3 46973772 46973799 -112625984 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 6 943 272 316 9 14 chr3 46974088 46974181 -112625602 + RSINE1 SINE B4 3 98 -194 6 943 468 48 0 0 chr3 46974239 46974302 -112625481 + (CA)n Simple_repeat Simple_repeat 2 64 0 6 943 24 32 0 0 chr3 46975167 46975198 -112624585 + AT_rich Low_complexity Low_complexity 1 31 0 6 943 216 67 0 0 chr3 46975961 46975991 -112623792 + (CAAG)n Simple_repeat Simple_repeat 2 31 0 6 943 577 258 0 30 chr3 46977086 46977218 -112622565 + RSINE1 SINE B4 3 130 -35 6 943 909 50 0 0 chr3 46978880 46978999 -112620784 + (TCTA)n Simple_repeat Simple_repeat 4 122 0 6 943 1903 166 41 6 chr3 46979137 46979501 -112620282 - Lx2 LINE L1 -5 6992 6616 6 943 320 325 65 20 chr3 46979749 46979950 -112619833 - MER67C LTR ERV1 -501 210 1 6 943 353 358 85 17 chr3 46980493 46980669 -112619114 + ID_B1 SINE B4 32 219 -5 6 943 218 303 22 0 chr3 46980845 46980934 -112618849 + CT-rich Low_complexity Low_complexity 2 92 0 6 943 21 0 0 0 chr3 46981115 46981136 -112618647 + AT_rich Low_complexity Low_complexity 1 21 0 6 943 264 30 0 0 chr3 46981297 46981330 -112618453 + (TTTTA)n Simple_repeat Simple_repeat 2 34 0 6 943 3845 82 6 2 chr3 46981956 46982469 -112617314 - L1_Mus3 LINE L1 -258 6380 5866 6 943 1145 122 10 21 chr3 46982469 46982662 -112617121 + L1_Mus3 LINE L1 6376 6566 -72 6 943 549 0 0 0 chr3 46982662 46982723 -112617060 + (TC)n Simple_repeat Simple_repeat 2 62 0 6 943 1409 263 106 23 chr3 46982723 46983166 -112616617 - Lx5 LINE L1 -4 7046 6567 6 943 3573 46 0 0 chr3 46983277 46983714 -112616069 + L1Md_F2 LINE L1 6136 6572 -10 6 943 216 325 0 13 chr3 46983902 46983980 -112615803 + (CATA)n Simple_repeat Simple_repeat 4 80 0 6 943 357 24 0 0 chr3 46984031 46984073 -112615710 + (TAA)n Simple_repeat Simple_repeat 1 42 0 7 943 191 61 0 29 chr3 46984075 46984109 -112615674 + (CAAA)n Simple_repeat Simple_repeat 1 33 0 7 943 489 365 40 44 chr3 46984190 46984488 -112615295 - MER21B LTR ERV1 -69 794 498 7 943 201 385 62 25 chr3 46985102 46985262 -112614521 - L2b LINE L2 0 3375 3210 7 943 837 180 57 130 chr3 46985408 46985670 -112614113 - Lx LINE L1 -8 6646 6404 7 943 3447 141 12 45 chr3 46985668 46986569 -112613214 - Lx LINE L1 -633 6021 5168 7 943 32 86 0 0 chr3 46987280 46987361 -112612422 + AT_rich Low_complexity Low_complexity 1 81 0 7 943 480 364 34 14 chr3 46987508 46987717 -112612066 + Tigger7 DNA MER2_type 66 278 -2213 7 943 400 306 38 14 chr3 46987746 46987955 -112611828 + Tigger7 DNA MER2_type 2166 2379 -112 7 943 219 284 0 0 chr3 46988662 46988750 -112611033 + (TG)n Simple_repeat Simple_repeat 2 89 0 7 943 26 30 0 0 chr3 46988906 46988939 -112610844 + AT_rich Low_complexity Low_complexity 1 33 0 7 943 990 310 106 59 chr3 46989726 46991340 -112608443 - L1MC3 LINE L1 -390 7395 5706 7 943 24 0 0 0 chr3 46991415 46991439 -112608344 + AT_rich Low_complexity Low_complexity 1 24 0 7 943 634 268 82 11 chr3 46991493 46991761 -112608022 - RCHARR1 DNA MER1_type -27 947 661 7 943 445 328 22 55 chr3 46991755 46991800 -112607983 - B3A SINE B2 -2 196 156 7 943 333 0 0 0 chr3 46991800 46991837 -112607946 + (TG)n Simple_repeat Simple_repeat 2 38 0 7 943 445 328 22 55 chr3 46991837 46991972 -112607811 - B3A SINE B2 -43 155 22 7 943 300 320 0 0 chr3 46992058 46992133 -112607650 - RSINE1 SINE B4 -35 130 56 7 943 567 250 107 5 chr3 46992144 46992341 -112607442 - RCHARR1 DNA MER1_type -312 662 446 7 943 515 343 24 0 chr3 46992673 46992842 -112606941 + B3 SINE B2 1 173 -43 7 943 441 90 11 22 chr3 46992866 46992957 -112606826 + (TAGA)n Simple_repeat Simple_repeat 4 93 0 7 943 28 0 0 0 chr3 46993221 46993249 -112606534 + AT_rich Low_complexity Low_complexity 1 28 0 7 943 1495 54 5 0 chr3 46993282 46993466 -112606317 - B2_Mm1t SINE B2 -7 186 2 7 943 767 319 58 40 chr3 46993781 46994177 -112605606 - Lx6 LINE L1 -12 7448 7046 7 943 1846 220 127 55 chr3 46994184 46994728 -112605055 + RMER4B LTR ERVK 3 585 0 7 943 681 237 78 50 chr3 46994735 46995033 -112604750 - Lx6 LINE L1 -577 6883 6456 7 943 1334 231 81 81 chr3 46995083 46995493 -112604290 + MTC LTR MaLR 2 411 -10 7 943 356 321 132 22 chr3 46995689 46996260 -112603523 + L1MC LINE L1 4308 4952 -1194 7 943 1118 183 25 7 chr3 46996676 46996947 -112602836 - L1MC3 LINE L1 -659 5465 5156 7 943 358 157 39 70 chr3 46997307 46997400 -112602383 - ORR1B2 LTR MaLR 0 378 281 7 943 3382 211 30 46 chr3 46997400 46998159 -112601624 - ORR1B2-int LTR MaLR 0 1509 763 7 943 1636 129 136 112 chr3 46998184 46998648 -112601135 - IAPLTR2_Mm LTR ERVK 0 475 1 7 943 907 162 126 6 chr3 46998656 46998830 -112600953 - ORR1B2 LTR MaLR -172 195 1 7 943 390 134 0 0 chr3 46999368 46999435 -112600348 + (TG)n Simple_repeat Simple_repeat 2 68 0 7 943 27 49 0 0 chr3 46999659 46999700 -112600083 + AT_rich Low_complexity Low_complexity 1 41 0 7 943 746 304 57 24 chr3 46999703 47000000 -112599783 - Lx3C LINE L1 -11 6965 6659 7 943 1119 231 4 4 chr3 47000000 47000226 -112599557 - Lx4B LINE L1 -401 6657 6432 1 943 2850 217 52 24 chr3 47000235 47001293 -112598490 - L1_Mur1 LINE L1 -2064 1848 753 2 943 423 98 0 0 chr3 47001729 47001790 -112597993 + (T)n Simple_repeat Simple_repeat 1 61 0 3 943 1011 102 0 0 chr3 47001790 47001937 -112597846 - B1_Mus1 SINE Alu 0 148 2 4 943 495 0 0 0 chr3 47002201 47002256 -112597527 + (TA)n Simple_repeat Simple_repeat 2 56 0 5 943 351 0 0 0 chr3 47002256 47002294 -112597489 + (TG)n Simple_repeat Simple_repeat 2 40 0 6 943 281 333 0 0 chr3 47002492 47002561 -112597222 - B4 SINE B4 -140 152 84 7 943 230 77 26 0 chr3 47003874 47003891 -112595892 + (TA)n Simple_repeat Simple_repeat 2 19 0 8 943 297 0 0 0 chr3 47003891 47003924 -112595859 + (CA)n Simple_repeat Simple_repeat 2 34 0 9 943 230 77 26 0 chr3 47003924 47003945 -112595838 + (TA)n Simple_repeat Simple_repeat 1 21 0 1 943 1923 284 68 91 chr3 47005070 47006414 -112593369 + RMER1B Other Other 1 1061 -5 1 943 24 0 0 0 chr3 47006962 47006986 -112592797 + AT_rich Low_complexity Low_complexity 1 24 0 1 943 21 36 0 0 chr3 47008180 47008208 -112591575 + AT_rich Low_complexity Low_complexity 1 28 0 1 943 26 74 0 0 chr3 47008758 47008812 -112590971 + AT_rich Low_complexity Low_complexity 1 54 0 1 943 948 152 24 30 chr3 47009238 47009407 -112590376 - MT2B LTR ERVL 0 601 434 1 943 1110 213 17 13 chr3 47009370 47009608 -112590175 - RLTR27 LTR ERVK -70 239 1 1 943 297 0 0 0 chr3 47010476 47010509 -112589274 + (TG)n Simple_repeat Simple_repeat 2 34 0 1 943 243 0 0 0 chr3 47010862 47010889 -112588894 + (TA)n Simple_repeat Simple_repeat 1 27 0 1 943 25 65 0 0 chr3 47011850 47011896 -112587887 + AT_rich Low_complexity Low_complexity 1 46 0 1 943 412 364 37 59 chr3 47012040 47012227 -112587556 + B3 SINE B2 13 195 -21 2 943 25 31 0 0 chr3 47012277 47012309 -112587474 + AT_rich Low_complexity Low_complexity 1 32 0 2 943 25 0 0 0 chr3 47012988 47013013 -112586770 + AT_rich Low_complexity Low_complexity 1 25 0 2 943 43 56 0 0 chr3 47013132 47013203 -112586580 + AT_rich Low_complexity Low_complexity 1 71 0 2 943 1655 197 88 6 chr3 47013217 47013570 -112586213 - RMER6D LTR ERVK 0 720 339 2 943 405 0 0 0 chr3 47013578 47013623 -112586160 + (TC)n Simple_repeat Simple_repeat 2 46 0 2 943 560 159 109 50 chr3 47013624 47013862 -112585921 - RMER17D LTR ERVK -394 495 244 2 943 1713 200 48 0 chr3 47013833 47014148 -112585635 - RMER6D LTR ERVK -390 330 1 2 943 2500 218 113 54 chr3 47014515 47015142 -112584641 + RLTR33 LTR ERVK 1 664 -14 2 943 291 54 0 0 chr3 47015360 47015397 -112584386 + (TA)n Simple_repeat Simple_repeat 2 38 0 2 943 23 92 0 0 chr3 47015426 47015491 -112584292 + AT_rich Low_complexity Low_complexity 1 65 0 2 943 233 262 40 24 chr3 47016126 47016288 -112583495 + (CATATA)n Simple_repeat Simple_repeat 1 164 0 3 943 636 326 58 83 chr3 47016341 47016666 -112583117 + MLT1B LTR MaLR 51 367 -23 3 943 4405 206 32 26 chr3 47016776 47017631 -112582152 - RMER19B LTR ERVK 0 902 41 3 943 2208 46 364 3 chr3 47017631 47017980 -112581803 + IAPLTR2_Mm LTR ERVK 1 475 0 3 943 4405 206 32 26 chr3 47017980 47018020 -112581763 - RMER19B LTR ERVK -862 40 1 3 943 21 0 0 0 chr3 47018301 47018322 -112581461 + AT_rich Low_complexity Low_complexity 1 21 0 3 943 281 366 85 82 chr3 47018397 47018751 -112581032 + MTEa LTR MaLR 22 376 -3 3 943 230 298 87 47 chr3 47019297 47019424 -112580359 + L2a LINE L2 3282 3413 -13 3 943 230 254 0 0 chr3 47019827 47019882 -112579901 - Lx6 LINE L1 -374 7086 7032 3 943 1071 274 65 12 chr3 47019887 47020212 -112579571 + Lx6 LINE L1 7091 7432 -28 3 943 351 0 0 0 chr3 47020858 47020897 -112578886 + (TA)n Simple_repeat Simple_repeat 1 39 0 3 943 417 39 0 0 chr3 47021040 47021091 -112578692 + (CA)n Simple_repeat Simple_repeat 2 52 0 3 943 315 0 0 0 chr3 47021091 47021125 -112578658 + (GA)n Simple_repeat Simple_repeat 2 36 0 4 943 343 333 10 0 chr3 47021183 47021285 -112578498 - B3 SINE B2 -76 140 38 4 943 243 0 0 0 chr3 47024001 47024028 -112575755 + (T)n Simple_repeat Simple_repeat 1 27 0 4 943 235 250 0 0 chr3 47025196 47025252 -112574531 + (TTTA)n Simple_repeat Simple_repeat 3 58 0 4 943 229 338 81 0 chr3 47025333 47025407 -112574376 - RSINE1 SINE B4 -82 83 4 4 943 1468 218 112 21 chr3 47025654 47026081 -112573702 + L1_Mus1 LINE L1 355 820 -5796 4 943 19324 120 29 6 chr3 47026082 47026765 -112573018 + L1_Mus1 LINE L1 2751 3491 -2392 4 943 436 43 43 0 chr3 47026765 47026835 -112572948 + (CAAA)n Simple_repeat Simple_repeat 2 74 0 4 943 19324 102 23 5 chr3 47026835 47029893 -112569890 + L1_Mus1 LINE L1 3492 6567 0 4 943 180 111 0 0 chr3 47030027 47030054 -112569729 + (TG)n Simple_repeat Simple_repeat 2 28 0 4 943 22 35 0 0 chr3 47030270 47030299 -112569484 + AT_rich Low_complexity Low_complexity 1 29 0 4 943 22 35 0 0 chr3 47030334 47030363 -112569420 + AT_rich Low_complexity Low_complexity 1 29 0 4 943 198 308 122 24 chr3 47031959 47032082 -112567701 - MIR SINE MIR -30 232 98 5 943 630 99 0 0 chr3 47033433 47033524 -112566259 + (TTCC)n Simple_repeat Simple_repeat 3 93 0 5 943 392 346 28 14 chr3 47033867 47034084 -112565699 - LTR68 LTR ERV1 0 740 521 5 943 930 119 125 6 chr3 47034233 47034393 -112565390 + B2_Mm1t SINE B2 1 179 -14 5 943 252 0 0 0 chr3 47034393 47034421 -112565362 + (T)n Simple_repeat Simple_repeat 1 28 0 5 943 4070 98 3 0 chr3 47034928 47035541 -112564242 - L1_Mus3 LINE L1 -487 6151 5537 5 943 3105 104 15 7 chr3 47035541 47036065 -112563718 + L1_Mus3 LINE L1 6170 6638 0 5 943 540 0 0 0 chr3 47036188 47036248 -112563535 + (TC)n Simple_repeat Simple_repeat 1 60 0 5 943 417 121 0 0 chr3 47037229 47037312 -112562471 + (A)n Simple_repeat Simple_repeat 1 83 0 5 943 24 53 0 0 chr3 47037957 47037995 -112561788 + AT_rich Low_complexity Low_complexity 1 38 0 5 943 400 291 52 7 chr3 47038938 47039073 -112560710 + Lx9 LINE L1 7284 7424 -220 5 943 1337 161 29 21 chr3 47039142 47039383 -112560400 - Lx4A LINE L1 -233 6825 6583 6 943 938 171 36 41 chr3 47039386 47039605 -112560178 + Lx4A LINE L1 6840 7057 -1 6 943 27 62 0 0 chr3 47039605 47039653 -112560130 + AT_rich Low_complexity Low_complexity 1 48 0 6 943 2366 191 52 9 chr3 47039865 47040525 -112559258 + L1_Mur2 LINE L1 1057 1809 -4068 6 943 668 123 0 47 chr3 47040522 47040650 -112559133 - L1_Mur2 LINE L1 -1979 3898 3777 6 943 1746 205 57 8 chr3 47040670 47041024 -112558759 + Lx5 LINE L1 6677 7047 -3 6 943 803 386 38 47 chr3 47041136 47041710 -112558073 + MTE-int LTR MaLR 857 1425 -155 6 943 253 409 62 11 chr3 47041762 47041940 -112557843 + ORR1E LTR MaLR 1 187 -172 6 943 185 65 32 0 chr3 47043171 47043202 -112556581 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 6 943 24 0 0 0 chr3 47045602 47045626 -112554157 + AT_rich Low_complexity Low_complexity 1 24 0 6 943 1071 91 0 0 chr3 47045997 47046140 -112553643 - B1_Mus1 SINE Alu -5 143 1 6 943 390 42 0 0 chr3 47046270 47046318 -112553465 + (TG)n Simple_repeat Simple_repeat 2 49 0 7 943 948 277 32 16 chr3 47047184 47047430 -112552353 - MTD LTR MaLR -56 363 114 7 943 2275 58 0 0 chr3 47047432 47047723 -112552060 + L1Md_A LINE L1 6292 6582 0 7 943 270 0 0 0 chr3 47047727 47047757 -112552026 + (A)n Simple_repeat Simple_repeat 1 30 0 7 943 258 269 0 71 chr3 47047757 47047841 -112551942 - MTD LTR MaLR -299 120 43 7 943 1010 76 14 0 chr3 47047851 47047995 -112551788 + (GAAAA)n Simple_repeat Simple_repeat 2 147 0 7 943 243 132 5 0 chr3 47048615 47048676 -112551107 - Lx2 LINE L1 -13 6984 6941 7 943 279 45 0 0 chr3 47048692 47048736 -112551047 - L1_Mus2 LINE L1 -1 6565 6522 7 943 6056 152 46 4 chr3 47048736 47049847 -112549936 - L1_Mur1 LINE L1 -1419 4467 3310 7 943 2180 190 0 58 chr3 47049904 47050385 -112549398 - RLTR11B LTR ERVK 0 453 1 7 943 22 99 0 0 chr3 47050589 47050660 -112549123 + AT_rich Low_complexity Low_complexity 1 71 0 7 943 778 123 31 0 chr3 47051220 47051350 -112548433 + Lx2 LINE L1 6631 6764 -233 8 943 504 158 0 10 chr3 47051350 47051452 -112548331 + Lx LINE L1 6552 6652 -2 8 943 1179 240 132 54 chr3 47051827 47052600 -112547183 - RMER6C LTR ERVK 0 720 1 8 943 462 364 18 59 chr3 47053509 47053731 -112546052 + B4 SINE B4 80 292 0 8 943 202 277 0 0 chr3 47053742 47053789 -112545994 + (CA)n Simple_repeat Simple_repeat 2 48 0 8 117 3547 62 19 6 chr3 47054629 47055114 -112544669 + L1_Mm LINE L1 2484 2974 -2909 8 944 213 211 0 0 chr3 47055547 47055604 -112544179 + (CA)n Simple_repeat Simple_repeat 2 58 0 8 944 489 17 0 0 chr3 47055617 47055675 -112544108 + (GA)n Simple_repeat Simple_repeat 1 58 0 8 944 285 98 0 0 chr3 47056033 47056074 -112543709 + (TTTTG)n Simple_repeat Simple_repeat 2 42 0 8 944 270 342 48 0 chr3 47057535 47057677 -112542106 - B3 SINE B2 -36 162 14 8 944 25 0 0 0 chr3 47058009 47058034 -112541749 + AT_rich Low_complexity Low_complexity 1 25 0 9 944 36 0 0 0 chr3 47058220 47058256 -112541527 + AT_rich Low_complexity Low_complexity 1 36 0 9 944 3567 126 17 5 chr3 47058256 47058831 -112540952 - L1Md_F2 LINE L1 0 6582 6001 9 944 3644 76 0 0 chr3 47058831 47059428 -112540355 + L1Md_F2 LINE L1 5414 6010 -572 9 944 1836 151 25 0 chr3 47059629 47059948 -112539835 + ORR1A2 LTR MaLR 1 327 0 9 944 430 280 125 23 chr3 47060102 47060318 -112539465 - MER97b DNA MER1_type? -784 269 32 9 944 408 249 303 5 chr3 47060384 47060602 -112539181 + Lx8 LINE L1 7095 7377 -96 9 944 286 178 65 22 chr3 47060688 47060780 -112539003 + (TATAA)n Simple_repeat Simple_repeat 5 100 0 9 944 279 78 36 72 chr3 47060847 47060958 -112538825 + (TA)n Simple_repeat Simple_repeat 1 107 0 9 944 460 323 48 50 chr3 47061237 47061739 -112538044 + Lx7 LINE L1 5763 6263 -1433 9 944 237 119 0 0 chr3 47061762 47061804 -112537979 + (TAAA)n Simple_repeat Simple_repeat 2 43 0 9 944 666 350 57 14 chr3 47061912 47062283 -112537500 + Lx8 LINE L1 6371 6757 -716 1 944 3383 191 66 5 chr3 47063991 47064661 -112535122 + Lx2 LINE L1 6233 6943 -54 1 944 260 330 21 65 chr3 47064686 47064873 -112534910 + B3A SINE B2 25 198 0 1 944 1053 90 10 102 chr3 47065626 47065823 -112533960 - L1_Mus3 LINE L1 -6 6632 6454 1 944 277 357 24 0 chr3 47065964 47066048 -112533735 + B4A SINE B4 118 203 -89 1 944 354 165 0 0 chr3 47066215 47066294 -112533489 + (CA)n Simple_repeat Simple_repeat 1 79 0 1 944 25 31 0 0 chr3 47066753 47066785 -112532998 + AT_rich Low_complexity Low_complexity 1 32 0 1 944 505 343 37 21 chr3 47066977 47067218 -112532565 - Lx8 LINE L1 -122 7351 7107 1 944 230 148 15 62 chr3 47067399 47067464 -112532319 + (CAATT)n Simple_repeat Simple_repeat 4 65 0 1 944 21 0 0 0 chr3 47067810 47067831 -112531952 + AT_rich Low_complexity Low_complexity 1 21 0 1 944 253 24 73 0 chr3 47068667 47068708 -112531075 + (CAAA)n Simple_repeat Simple_repeat 2 45 0 1 944 23 0 0 0 chr3 47068943 47068966 -112530817 + AT_rich Low_complexity Low_complexity 1 23 0 1 944 1885 97 47 3 chr3 47069985 47070284 -112529499 - Lx4A LINE L1 -1110 5948 5637 1 944 4791 198 42 1 chr3 47070287 47071237 -112528546 + Lx4A LINE L1 6067 7055 -3 1 944 241 330 14 30 chr3 47071596 47071718 -112528065 - MIRc SINE MIR -102 166 43 1 944 22 0 0 0 chr3 47072017 47072039 -112527744 + AT_rich Low_complexity Low_complexity 1 22 0 1 944 180 0 0 0 chr3 47072462 47072482 -112527301 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 1 944 431 400 13 13 chr3 47072484 47072636 -112527147 + RSINE1 SINE B4 4 155 -10 1 944 403 63 16 16 chr3 47072642 47072706 -112527077 + (CA)n Simple_repeat Simple_repeat 1 64 0 1 944 351 389 44 38 chr3 47073180 47073522 -112526261 - MER44B DNA MER2_type -4 546 203 1 944 354 61 0 0 chr3 47074213 47074262 -112525521 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 944 23 0 0 0 chr3 47074464 47074487 -112525296 + AT_rich Low_complexity Low_complexity 1 23 0 1 944 4828 183 32 28 chr3 47074649 47075739 -112524044 + L1_Mur1 LINE L1 2321 3414 -2472 1 944 30 59 0 0 chr3 47075754 47075805 -112523978 + AT_rich Low_complexity Low_complexity 1 51 0 1 944 7952 141 55 21 chr3 47075810 47076643 -112523140 - Lx3B LINE L1 -857 6116 5268 1 944 221 0 35 0 chr3 47076643 47076672 -112523111 + (TTTG)n Simple_repeat Simple_repeat 3 32 0 1 944 7952 136 53 19 chr3 47076672 47077518 -112522265 - Lx3B LINE L1 -619 5267 4388 1 944 22 0 0 0 chr3 47077736 47077758 -112522025 + AT_rich Low_complexity Low_complexity 1 22 0 1 944 336 275 0 21 chr3 47078466 47078559 -112521224 - RSINE1 SINE B4 -71 94 4 1 944 1130 317 75 13 chr3 47079100 47079567 -112520216 + RMER5 LTR ERV1 37 532 -2 1 944 231 36 0 0 chr3 47079672 47079700 -112520083 + (TAAA)n Simple_repeat Simple_repeat 2 29 0 1 944 21 0 0 0 chr3 47079762 47079783 -112520000 + AT_rich Low_complexity Low_complexity 1 21 0 1 944 4495 264 106 22 chr3 47081218 47081867 -112517916 - Lx6 LINE L1 -5 7455 6741 1 944 189 0 0 0 chr3 47081867 47081888 -112517895 + (TTTG)n Simple_repeat Simple_repeat 4 24 0 1 944 4495 264 106 22 chr3 47081888 47082804 -112516979 - Lx6 LINE L1 -720 6740 5759 1 944 325 272 157 9 chr3 47083696 47083811 -112515972 - HAL1-3A_ME LINE L1 -443 2415 2284 1 944 429 141 0 0 chr3 47083811 47083882 -112515901 + (TC)n Simple_repeat Simple_repeat 2 72 0 1 944 319 254 16 102 chr3 47085256 47085383 -112514400 - RSINE1 SINE B4 -4 161 46 1 944 35093 49 0 3 chr3 47086878 47092265 -112507518 + L1Md_A LINE L1 123 5588 -298 1 944 8309 38 0 0 chr3 47092266 47093262 -112506521 + L1Md_A LINE L1 5590 6585 0 1 944 2801 276 18 21 chr3 47093628 47094716 -112505067 - RMER1A Other Other -223 807 7 1 944 216 0 0 0 chr3 47094854 47094878 -112504905 + (ATTTG)n Simple_repeat Simple_repeat 2 25 0 1 944 4141 4 2 0 chr3 47095148 47095616 -112504167 + L1Md_A LINE L1 5118 5586 -297 1 944 8996 3 0 0 chr3 47095616 47096612 -112503171 + L1Md_A LINE L1 5587 6582 0 1 944 180 0 0 0 chr3 47096643 47096663 -112503120 + (A)n Simple_repeat Simple_repeat 1 20 0 1 944 444 37 0 0 chr3 47097134 47097188 -112502595 + (TA)n Simple_repeat Simple_repeat 2 55 0 1 944 435 38 0 0 chr3 47097296 47097349 -112502434 + (TA)n Simple_repeat Simple_repeat 2 54 0 1 944 452 370 91 4 chr3 47097435 47097698 -112502085 + Tigger5 DNA MER2_type 16 301 -2105 1 944 392 279 33 61 chr3 47098089 47098314 -112501469 - RLTR31A_Mm LTR ERVK 0 561 304 1 944 19070 109 15 17 chr3 47098314 47101967 -112497816 + L1_Mus1 LINE L1 2904 6551 -16 1 944 1426 196 58 18 chr3 47101967 47102295 -112497488 - RLTR31A_Mm LTR ERVK -243 341 1 1 944 242 380 47 35 chr3 47102334 47102506 -112497277 + Tigger5 DNA MER2_type 2225 2398 -8 1 944 23 0 0 0 chr3 47103664 47103687 -112496096 + AT_rich Low_complexity Low_complexity 1 23 0 1 944 374 171 135 0 chr3 47103765 47103876 -112495907 - Lx9 LINE L1 -2 7642 7517 1 944 546 333 109 49 chr3 47104293 47104558 -112495225 - B4 SINE B4 0 292 12 1 944 287 384 84 30 chr3 47104553 47104923 -112494860 - Tigger7 DNA MER2_type -1967 524 135 1 944 4256 108 2 16 chr3 47105175 47105818 -112493965 - L1_Mus2 LINE L1 -1 6565 5932 1 944 25589 154 38 34 chr3 47105819 47112010 -112487773 - L1Md_F3 LINE L1 -2 6582 367 1 944 23 54 0 0 chr3 47112793 47112830 -112486953 + AT_rich Low_complexity Low_complexity 1 37 0 1 944 26 0 0 0 chr3 47113043 47113069 -112486714 + AT_rich Low_complexity Low_complexity 1 26 0 1 944 24 0 0 0 chr3 47113137 47113161 -112486622 + AT_rich Low_complexity Low_complexity 1 24 0 1 944 4567 121 71 28 chr3 47113162 47113977 -112485806 - Lx3A LINE L1 -3 6978 6129 1 944 974 157 7 0 chr3 47114036 47114189 -112485594 + B2_Mm2 SINE B2 1 154 -41 1 944 216 0 0 0 chr3 47114197 47114221 -112485562 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 1 944 1269 234 56 50 chr3 47114349 47114668 -112485115 + Lx5 LINE L1 6727 7047 -3 1 944 21 36 0 0 chr3 47116504 47116532 -112483251 + AT_rich Low_complexity Low_complexity 1 28 0 1 944 277 376 103 48 chr3 47116595 47116866 -112482917 - B4A SINE B4 -2 290 5 1 944 259 288 0 36 chr3 47117200 47117283 -112482500 + Lx8 LINE L1 7390 7469 -4 1 944 31 0 0 0 chr3 47117316 47117347 -112482436 + AT_rich Low_complexity Low_complexity 1 31 0 1 944 8211 36 0 0 chr3 47117733 47118713 -112481070 + L1Md_A LINE L1 5603 6582 0 1 944 198 0 0 0 chr3 47118730 47118752 -112481031 + (TAA)n Simple_repeat Simple_repeat 3 24 0 1 944 237 196 0 0 chr3 47118797 47118853 -112480930 + (ATGGTG)n Simple_repeat Simple_repeat 5 60 0 1 944 279 202 17 9 chr3 47118932 47119047 -112480736 + CT-rich Low_complexity Low_complexity 2 117 0 1 944 678 208 0 16 chr3 47119048 47119175 -112480608 - B1_Mur4 SINE Alu -23 127 3 1 944 243 0 0 0 chr3 47119329 47119356 -112480427 + (TA)n Simple_repeat Simple_repeat 1 27 0 1 944 690 13 0 0 chr3 47119356 47119434 -112480349 + (CA)n Simple_repeat Simple_repeat 2 80 0 1 944 280 370 51 28 chr3 47120461 47120675 -112479108 - ERVL-E-int LTR ERVL -2626 3041 2823 1 944 1535 97 75 4 chr3 47121479 47121567 -112478216 - Lx LINE L1 -211 6443 6346 1 944 387 0 0 0 chr3 47121567 47121610 -112478173 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 944 1535 97 75 4 chr3 47121610 47121749 -112478034 - Lx LINE L1 -309 6345 6201 1 944 462 298 16 86 chr3 47121751 47121887 -112477896 - B3A SINE B2 -24 174 38 1 944 1597 115 7 22 chr3 47121887 47122163 -112477620 + L1_Mus3 LINE L1 6365 6636 -2 1 944 462 298 16 86 chr3 47122163 47122213 -112477570 - B3A SINE B2 -161 37 1 1 944 246 256 11 32 chr3 47122739 47122754 -112477029 + (TA)n Simple_repeat Simple_repeat 2 16 0 1 944 1296 165 153 76 chr3 47122754 47123055 -112476728 + ORR1A3 LTR MaLR 1 324 -2 1 944 246 256 11 32 chr3 47123055 47123132 -112476651 + (TA)n Simple_repeat Simple_repeat 2 77 0 1 944 413 89 0 0 chr3 47123306 47123362 -112476421 + Lx3_Mus LINE L1 6472 6527 -482 1 944 21 0 0 0 chr3 47123432 47123453 -112476330 + AT_rich Low_complexity Low_complexity 1 21 0 1 944 3221 88 54 4 chr3 47124164 47124630 -112475153 + L1_Mus4 LINE L1 6141 6629 -7 1 944 5694 134 54 1 chr3 47125061 47126009 -112473774 + Lx3A LINE L1 5984 6981 0 1 944 7136 208 52 10 chr3 47126016 47127023 -112472760 + Lx6 LINE L1 3465 4514 -1366 1 944 240 35 0 0 chr3 47127023 47127052 -112472731 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1 944 7136 206 54 8 chr3 47127052 47127888 -112471895 + Lx6 LINE L1 4515 5368 -512 1 944 2742 88 28 0 chr3 47127888 47128276 -112471507 + L1_Mus1 LINE L1 6169 6567 0 1 944 201 74 0 0 chr3 47129059 47129086 -112470697 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1 944 2036 239 18 37 chr3 47129099 47129612 -112470171 - Lx5 LINE L1 -40 7010 6508 1 944 1446 249 31 80 chr3 47129615 47130205 -112469578 + Lx6 LINE L1 5416 5982 -1478 1 944 2822 201 130 27 chr3 47130225 47130881 -112468902 - RMER19B LTR ERVK 0 902 180 1 944 2633 270 62 81 chr3 47131058 47131562 -112468221 + Lx6 LINE L1 6211 6717 -743 1 944 3424 34 0 9 chr3 47131562 47131983 -112467800 + L1Md_F3 LINE L1 6155 6571 -13 1 944 2633 270 62 81 chr3 47131983 47132018 -112467765 + Lx6 LINE L1 6718 6759 -701 1 944 212 0 0 35 chr3 47132018 47132047 -112467736 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 1 944 2633 270 62 81 chr3 47132047 47132780 -112467003 + Lx6 LINE L1 6760 7460 0 1 944 200 196 19 38 chr3 47132781 47132834 -112466949 + GA-rich Low_complexity Low_complexity 3 54 0 1 944 823 114 94 24 chr3 47132863 47133033 -112466750 - Lx2 LINE L1 -4 6993 6812 1 944 451 253 10 10 chr3 47133033 47133129 -112466654 + ID_B1 SINE B4 12 107 -117 1 944 22 35 0 0 chr3 47133129 47133158 -112466625 + AT_rich Low_complexity Low_complexity 1 29 0 1 944 2105 286 24 9 chr3 47133279 47133861 -112465922 + Lx7 LINE L1 6764 7354 -342 1 944 446 114 0 12 chr3 47134129 47134209 -112465574 - L1_Mus2 LINE L1 0 6566 6488 1 944 192 40 0 0 chr3 47134213 47134238 -112465545 + (CAAAA)n Simple_repeat Simple_repeat 3 27 0 1 944 440 205 7 64 chr3 47134258 47134399 -112465384 + Lx7 LINE L1 7564 7696 0 1 944 259 288 131 34 chr3 47134629 47134805 -112464978 + B3A SINE B2 4 196 -2 1 944 2481 117 5 16 chr3 47134812 47135194 -112464589 - Lx2A LINE L1 0 7008 6631 1 944 8498 226 96 29 chr3 47135740 47136320 -112463463 + Lx6 LINE L1 2407 2983 -2897 1 944 450 0 0 0 chr3 47136320 47136370 -112463413 + (CA)n Simple_repeat Simple_repeat 1 50 0 2 944 8498 226 96 29 chr3 47136370 47136417 -112463366 + Lx6 LINE L1 2984 3047 -2833 1 944 180 0 0 0 chr3 47136417 47136437 -112463346 + (CAA)n Simple_repeat Simple_repeat 2 21 0 2 944 8498 226 96 29 chr3 47136437 47136640 -112463143 + Lx6 LINE L1 3048 3257 -2623 1 944 330 80 0 0 chr3 47136640 47136690 -112463093 + (CAA)n Simple_repeat Simple_repeat 2 51 0 2 944 8498 226 96 29 chr3 47136690 47138561 -112461222 + Lx6 LINE L1 3258 5287 -593 1 944 2866 119 2 11 chr3 47138564 47139013 -112460770 + Lx3_Mus LINE L1 6094 6538 -471 2 944 1722 59 0 0 chr3 47139010 47139230 -112460553 - L1_Mus2 LINE L1 -627 5939 5720 2 944 1311 74 0 0 chr3 47139230 47139405 -112460378 + L1_Mus2 LINE L1 6392 6566 0 2 944 2471 172 15 21 chr3 47139401 47139870 -112459913 + Lx3A LINE L1 6504 6970 -11 2 944 477 0 0 0 chr3 47139870 47139923 -112459860 + (GA)n Simple_repeat Simple_repeat 2 54 0 2 944 2471 172 15 21 chr3 47139923 47139934 -112459849 + Lx3A LINE L1 6971 6981 0 2 944 1834 250 60 48 chr3 47139939 47140471 -112459312 + Lx6 LINE L1 5290 5828 -52 1 944 180 0 0 0 chr3 47140471 47140491 -112459292 + (CAAAA)n Simple_repeat Simple_repeat 3 22 0 2 944 1834 245 179 43 chr3 47140491 47140933 -112458850 + Lx6 LINE L1 5829 6408 -642 1 944 432 180 0 101 chr3 47140933 47141032 -112458751 - RLTR25A LTR ERVK 0 1103 1015 2 944 202 259 35 0 chr3 47142144 47142202 -112457581 + GA-rich Low_complexity Low_complexity 4 63 0 2 944 513 0 0 0 chr3 47142622 47142679 -112457104 + (CA)n Simple_repeat Simple_repeat 1 57 0 2 944 808 359 137 12 chr3 47142793 47143368 -112456415 - Lx8 LINE L1 -275 7198 6552 2 944 1605 74 4 65 chr3 47144048 47144293 -112455490 - L1_Mus1 LINE L1 -1 6566 6337 2 944 1208 131 0 0 chr3 47145197 47145380 -112454403 - L1_Mus3 LINE L1 -389 6249 6067 2 944 2231 98 18 9 chr3 47145380 47145720 -112454063 + L1_Mus3 LINE L1 6295 6637 -1 2 944 1238 301 122 39 chr3 47146729 47147819 -112451964 - BLACKJACK DNA AcHobo -189 2755 1576 2 944 312 94 0 0 chr3 47147904 47147957 -112451826 + (A)n Simple_repeat Simple_repeat 1 53 0 2 944 253 347 8 53 chr3 47148775 47148906 -112450877 + MLT1B LTR MaLR 216 340 -50 2 944 216 207 0 33 chr3 47149025 47149085 -112450698 + CT-rich Low_complexity Low_complexity 2 59 0 2 944 555 78 0 0 chr3 47149086 47149163 -112450620 + (CA)n Simple_repeat Simple_repeat 2 78 0 2 944 361 338 33 49 chr3 47149174 47149417 -112450366 - Lx9 LINE L1 -234 7410 7172 2 944 367 367 109 24 chr3 47149435 47149775 -112450008 - BLACKJACK DNA AcHobo -1870 1074 706 2 944 1156 130 16 16 chr3 47150262 47150449 -112449334 + B2_Mm2 SINE B2 1 187 -8 2 944 573 261 0 34 chr3 47151151 47151298 -112448485 - B1_Mus2 SINE Alu -2 145 4 2 944 21 0 0 0 chr3 47151465 47151486 -112448297 + AT_rich Low_complexity Low_complexity 1 21 0 2 944 254 368 63 63 chr3 47151572 47151859 -112447924 + B4A SINE B4 2 288 -4 2 944 289 242 22 11 chr3 47152071 47152163 -112447620 + GA-rich Low_complexity Low_complexity 3 95 0 2 944 446 277 13 20 chr3 47152418 47152569 -112447214 + L3 LINE CR1 915 1064 -3425 2 944 266 0 29 0 chr3 47152996 47153030 -112446753 + (TTG)n Simple_repeat Simple_repeat 2 36 0 2 944 274 286 126 59 chr3 47153094 47153213 -112446570 + RSINE1 SINE B4 39 165 0 2 944 21 0 0 0 chr3 47153496 47153517 -112446266 + AT_rich Low_complexity Low_complexity 1 21 0 2 944 207 88 0 0 chr3 47153882 47153916 -112445867 + (TTGG)n Simple_repeat Simple_repeat 2 35 0 2 944 328 310 20 20 chr3 47154160 47154262 -112445521 - Lx8 LINE L1 -256 7217 7116 2 944 338 209 30 0 chr3 47155617 47155684 -112444099 + PB1D9 SINE Alu 49 117 -3 2 944 707 315 5 0 chr3 47155897 47156097 -112443686 - B3 SINE B2 -10 206 6 2 944 444 361 80 40 chr3 47156159 47156433 -112443350 - B4 SINE B4 -7 285 1 2 944 911 286 30 4 chr3 47157851 47158120 -112441663 + MER63C DNA AcHobo 430 705 -225 2 944 863 262 36 29 chr3 47158120 47158399 -112441384 + MER34 LTR ERV1 3 283 -259 2 944 221 234 15 15 chr3 47158620 47158685 -112441098 + (TA)n Simple_repeat Simple_repeat 1 65 0 2 944 610 197 20 60 chr3 47159668 47159819 -112439964 - L1_Mur2 LINE L1 -206 5671 5527 2 944 3716 218 43 13 chr3 47159812 47160607 -112439176 + Lx4B LINE L1 6165 6983 -75 2 944 22 0 0 0 chr3 47160612 47160634 -112439149 + AT_rich Low_complexity Low_complexity 1 22 0 2 944 637 188 0 0 chr3 47160650 47160762 -112439021 + L1Md_F LINE L1 418 529 -5990 2 944 24097 123 39 7 chr3 47160762 47162364 -112437419 + L1Md_F2 LINE L1 306 1964 -3919 2 944 387 0 0 0 chr3 47162364 47162407 -112437376 + (CAA)n Simple_repeat Simple_repeat 3 45 0 2 944 24097 103 7 10 chr3 47162407 47165329 -112434454 + L1Md_F2 LINE L1 1965 4875 -1008 2 944 8367 39 3 0 chr3 47165337 47167038 -112432745 - L1Md_A LINE L1 0 6582 4876 2 944 4478 92 66 3 chr3 47167013 47167680 -112432103 + L1Md_F2 LINE L1 4877 5585 -298 2 944 7475 65 11 2 chr3 47167682 47168656 -112431127 + L1Md_F2 LINE L1 5588 6570 -12 2 944 25 0 0 0 chr3 47168728 47168753 -112431030 + AT_rich Low_complexity Low_complexity 1 25 0 2 944 1086 96 7 0 chr3 47168753 47168899 -112430884 - B1_Mm SINE Alu 0 147 1 2 944 588 134 0 0 chr3 47169146 47169243 -112430540 + (TA)n Simple_repeat Simple_repeat 2 98 0 2 944 3639 108 6 0 chr3 47170032 47170552 -112429231 - Lx3_Mus LINE L1 -2 7007 6485 2 944 1265 76 6 0 chr3 47170552 47170724 -112429059 + L1_Mus1 LINE L1 6395 6567 0 2 944 369 153 0 0 chr3 47171212 47171284 -112428499 + (TG)n Simple_repeat Simple_repeat 2 73 0 2 944 432 0 0 0 chr3 47171284 47171332 -112428451 + (GA)n Simple_repeat Simple_repeat 1 48 0 2 944 1267 272 104 39 chr3 47171434 47171923 -112427860 + RMER19C LTR ERVK 88 608 -3 2 944 1535 209 168 88 chr3 47172667 47173233 -112426550 + RMER19C LTR ERVK 1 611 0 2 944 1005 109 0 26 chr3 47173341 47173492 -112426291 - B1_Mus2 SINE Alu 0 147 1 2 944 23 78 0 0 chr3 47173619 47173670 -112426113 + AT_rich Low_complexity Low_complexity 1 51 0 2 944 29 0 0 0 chr3 47173729 47173758 -112426025 + AT_rich Low_complexity Low_complexity 1 29 0 2 944 8230 123 14 30 chr3 47173924 47175564 -112424219 + Lx3A LINE L1 5370 6968 -13 2 944 333 0 0 0 chr3 47175564 47175601 -112424182 + (TAAA)n Simple_repeat Simple_repeat 2 38 0 2 944 24 0 0 0 chr3 47175804 47175828 -112423955 + AT_rich Low_complexity Low_complexity 1 24 0 2 944 38054 50 13 4 chr3 47175874 47182109 -112417674 - L1Md_A LINE L1 -1 6581 290 2 944 360 0 0 0 chr3 47182127 47182167 -112417616 + (TC)n Simple_repeat Simple_repeat 1 40 0 2 944 760 297 33 0 chr3 47183445 47183627 -112416156 + B3 SINE B2 1 188 -28 2 944 910 143 0 11 chr3 47183670 47183847 -112415936 + GA-rich Low_complexity Low_complexity 1 175 0 2 944 297 75 0 0 chr3 47183856 47183896 -112415887 + (CAAG)n Simple_repeat Simple_repeat 1 40 0 2 944 297 283 25 74 chr3 47184432 47184554 -112415229 - PB1D9 SINE Alu -4 116 1 2 944 23 0 0 0 chr3 47184638 47184661 -112415122 + AT_rich Low_complexity Low_complexity 1 23 0 2 14 4845 136 4 3 chr3 47185689 47186432 -112413351 + L1Md_F LINE L1 283 1026 -5493 2 945 1465 170 8 4 chr3 47186444 47186709 -112413074 + L1VL1 LINE L1 1 266 -6156 2 945 836 222 6 0 chr3 47186709 47186876 -112412907 + L1Md_F2 LINE L1 480 647 -5969 2 945 20259 99 9 107 chr3 47186873 47187921 -112411862 + L1Md_F2 LINE L1 2418 3450 -3132 2 945 3167 35 30 5 chr3 47187921 47188322 -112411461 - RLTR10C LTR ERVK 0 436 26 2 945 20259 99 9 107 chr3 47188322 47191172 -112408611 + L1Md_F2 LINE L1 3451 6263 -319 2 945 2679 126 23 5 chr3 47191172 47191604 -112408179 + RLTR44E LTR ERVK 1 440 -12 2 945 2312 68 19 3 chr3 47191618 47191928 -112407855 + L1_Mus1 LINE L1 6247 6561 -6 2 945 40 0 0 0 chr3 47192754 47192794 -112406989 + AT_rich Low_complexity Low_complexity 1 40 0 2 945 376 354 34 34 chr3 47194056 47194261 -112405522 + Lx8 LINE L1 6450 6654 -819 2 945 281 359 136 0 chr3 47194378 47194562 -112405221 - ID_B1 SINE B4 -14 210 2 2 945 483 18 0 0 chr3 47194570 47194626 -112405157 + (TG)n Simple_repeat Simple_repeat 2 57 0 2 945 187 31 62 0 chr3 47195805 47195837 -112403946 + (TA)n Simple_repeat Simple_repeat 1 34 0 2 945 2684 75 24 8 chr3 47196116 47196493 -112403290 - L1Md_F2 LINE L1 0 6582 6200 2 945 2219 278 61 25 chr3 47197974 47198744 -112401039 + Lx9 LINE L1 6804 7610 -34 2 945 1133 68 0 0 chr3 47198744 47198890 -112400893 + B1_Mus2 SINE Alu 2 147 0 2 945 2219 278 61 25 chr3 47198890 47198927 -112400856 + Lx9 LINE L1 7611 7640 -4 2 945 21 0 0 0 chr3 47198934 47198955 -112400828 + AT_rich Low_complexity Low_complexity 1 21 0 2 945 628 226 8 0 chr3 47198986 47199119 -112400664 + URR1A DNA MER1_type 59 192 -34 2 945 777 269 104 47 chr3 47199128 47199425 -112400358 + MTD-int LTR MaLR 6 319 -939 2 945 5027 174 9 8 chr3 47199437 47200845 -112398938 + Lx LINE L1 5045 6452 -202 2 945 1275 45 6 22 chr3 47200852 47201033 -112398750 + (GAAA)n Simple_repeat Simple_repeat 3 180 0 2 945 1239 291 111 50 chr3 47201043 47201708 -112398075 + MTD-int LTR MaLR 418 1123 -135 2 945 370 262 89 8 chr3 47201830 47201953 -112397830 + MTD-int LTR MaLR 1124 1256 -2 2 945 1218 290 40 59 chr3 47201958 47202383 -112397400 + MTD LTR MaLR 3 419 0 2 945 525 150 45 0 chr3 47203850 47203983 -112395800 + GA-rich Low_complexity Low_complexity 1 139 0 2 945 5167 163 34 12 chr3 47204326 47205247 -112394536 - Lx4A LINE L1 0 7058 6118 2 945 23 33 0 0 chr3 47205312 47205342 -112394441 + AT_rich Low_complexity Low_complexity 1 30 0 2 945 41158 5 2 0 chr3 47205354 47211543 -112388240 - L1Md_A LINE L1 -1 6581 377 2 945 415 341 0 0 chr3 47213267 47213393 -112386390 + ID_B1 SINE B4 97 222 -2 2 945 387 0 0 0 chr3 47213861 47213904 -112385879 + (TG)n Simple_repeat Simple_repeat 2 44 0 2 945 344 299 46 18 chr3 47214467 47214576 -112385207 - AmnSINE1 SINE SINE -150 425 314 2 945 181 273 18 35 chr3 47215190 47215247 -112384536 - L4 LINE RTE -158 1871 1816 2 945 5394 18 0 0 chr3 47215334 47215949 -112383834 - L1Md_A LINE L1 -1 6581 5967 2 945 2552 248 94 77 chr3 47215960 47216034 -112383749 + L1_Mur3 LINE L1 1814 1889 -3991 2 945 256 0 24 49 chr3 47216034 47216075 -112383708 + (TAAA)n Simple_repeat Simple_repeat 4 43 0 2 945 2552 248 94 77 chr3 47216075 47217165 -112382618 + L1_Mur3 LINE L1 1890 2997 -2883 2 945 487 333 13 19 chr3 47217275 47217434 -112382349 - B3 SINE B2 -1 215 58 2 945 185 122 49 0 chr3 47217500 47217541 -112382242 + (TCTCTG)n Simple_repeat Simple_repeat 2 44 0 2 945 284 257 66 9 chr3 47217637 47217743 -112382040 + L1M5 LINE L1 5666 5777 -463 2 945 242 172 0 33 chr3 47217979 47218047 -112381736 - L1_Rod LINE L1 -653 5659 5531 2 945 295 208 0 0 chr3 47218064 47218117 -112381666 - B1_Mur4 SINE Alu -6 144 92 3 945 11700 58 7 1 chr3 47218156 47220402 -112379381 - L1Md_F2 LINE L1 -15 6567 4310 3 945 473 141 0 10 chr3 47220402 47220502 -112379281 + CT-rich Low_complexity Low_complexity 1 99 0 3 945 379 329 14 27 chr3 47220899 47221046 -112378737 + Charlie14a DNA MER1_type 1007 1151 -13 3 945 24 67 0 0 chr3 47221524 47221569 -112378214 + AT_rich Low_complexity Low_complexity 1 45 0 3 945 212 149 21 0 chr3 47222320 47222367 -112377416 + (TAAA)n Simple_repeat Simple_repeat 2 49 0 3 945 2511 130 144 2 chr3 47224089 47224520 -112375263 - Lx LINE L1 0 6654 6163 3 945 426 20 0 0 chr3 47224666 47224717 -112375066 + (CA)n Simple_repeat Simple_repeat 2 52 0 3 945 396 0 0 0 chr3 47224717 47224760 -112375023 + (GA)n Simple_repeat Simple_repeat 2 45 0 3 945 1201 248 39 48 chr3 47224903 47225118 -112374665 - MTD LTR MaLR -5 414 192 3 945 261 0 0 0 chr3 47225118 47225147 -112374636 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 3 945 1201 248 39 48 chr3 47225147 47225262 -112374521 - MTD LTR MaLR -228 191 87 3 945 7553 84 0 0 chr3 47225345 47226454 -112373329 + L1_Mus1 LINE L1 5458 6567 0 3 945 369 0 0 0 chr3 47227240 47227281 -112372502 + (TC)n Simple_repeat Simple_repeat 2 42 0 3 945 675 25 0 0 chr3 47227281 47227361 -112372422 + (TG)n Simple_repeat Simple_repeat 2 82 0 3 945 514 291 58 29 chr3 47228503 47228708 -112371075 - B3 SINE B2 -5 211 1 3 945 25 0 0 0 chr3 47228921 47228946 -112370837 + AT_rich Low_complexity Low_complexity 1 25 0 3 945 222 37 0 0 chr3 47229362 47229389 -112370394 + (TTTA)n Simple_repeat Simple_repeat 1 27 0 3 945 215 232 28 28 chr3 47229432 47229503 -112370280 + (TATATG)n Simple_repeat Simple_repeat 4 74 0 3 945 298 366 26 52 chr3 47229899 47230092 -112369691 + LTR69 LTR ERVL 345 532 -56 3 945 585 28 0 0 chr3 47231271 47231342 -112368441 + (TAGA)n Simple_repeat Simple_repeat 4 74 0 3 945 1144 82 0 0 chr3 47231417 47231563 -112368220 + B1_Mus2 SINE Alu 1 146 -1 3 945 7629 158 73 1 chr3 47231774 47233161 -112366622 + Lx4A LINE L1 5529 7018 -40 3 945 216 0 0 0 chr3 47233169 47233193 -112366590 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 3 945 615 231 0 17 chr3 47233319 47233438 -112366345 - B3 SINE B2 -86 130 14 3 945 218 242 14 83 chr3 47233378 47233450 -112366333 - ID4_ SINE ID -11 72 6 3 945 22 0 0 0 chr3 47234009 47234031 -112365752 + AT_rich Low_complexity Low_complexity 1 22 0 3 945 441 54 0 0 chr3 47234086 47234142 -112365641 + (CATA)n Simple_repeat Simple_repeat 3 58 0 3 945 2316 215 61 28 chr3 47235139 47235714 -112364069 - Lx4B LINE L1 -17 7041 6448 3 945 1720 204 51 28 chr3 47235738 47236167 -112363616 + RMER17B LTR ERVK 1 439 -519 3 945 2410 225 52 20 chr3 47236186 47236798 -112362985 + RMER13B LTR ERVK 272 903 -5 3 945 2857 175 11 30 chr3 47236805 47237377 -112362406 - Lx4B LINE L1 -605 6453 5893 3 945 25 31 0 0 chr3 47237519 47237551 -112362232 + AT_rich Low_complexity Low_complexity 1 32 0 3 945 370 200 74 12 chr3 47238705 47238786 -112360997 + Lx7 LINE L1 7252 7337 -359 3 945 21 0 0 0 chr3 47239017 47239038 -112360745 + AT_rich Low_complexity Low_complexity 1 21 0 3 945 26 0 0 0 chr3 47239358 47239384 -112360399 + AT_rich Low_complexity Low_complexity 1 26 0 3 945 28 48 0 0 chr3 47240724 47240766 -112359017 + AT_rich Low_complexity Low_complexity 1 42 0 3 945 234 250 11 81 chr3 47241103 47241190 -112358593 + Lx9 LINE L1 7342 7422 -222 3 945 186 43 0 0 chr3 47241319 47241342 -112358441 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 3 945 23 54 0 0 chr3 47241820 47241857 -112357926 + AT_rich Low_complexity Low_complexity 1 37 0 3 945 454 301 64 45 chr3 47241960 47242162 -112357621 + B3 SINE B2 1 206 -10 3 945 1044 145 93 0 chr3 47242442 47242635 -112357148 - Lx3C LINE L1 0 6976 6766 3 945 1437 279 157 33 chr3 47243149 47243532 -112356251 + Lx6 LINE L1 6674 7124 -336 3 945 396 0 0 0 chr3 47243532 47243576 -112356207 + (TG)n Simple_repeat Simple_repeat 2 45 0 3 945 1437 279 157 33 chr3 47243576 47243803 -112355980 + Lx6 LINE L1 7125 7359 -101 3 945 22 35 0 0 chr3 47244665 47244694 -112355089 + AT_rich Low_complexity Low_complexity 1 29 0 3 945 201 159 0 0 chr3 47244842 47244886 -112354897 + (TG)n Simple_repeat Simple_repeat 1 44 0 3 945 191 362 43 8 chr3 47245185 47245302 -112354481 + MIRc SINE MIR 38 158 -110 3 945 313 292 306 15 chr3 47245304 47245572 -112354211 + Charlie2b DNA MER1_type 2 347 -2435 3 945 251 292 107 28 chr3 47245585 47245800 -112353983 + Charlie2b DNA MER1_type 2149 2380 -402 3 945 423 297 95 22 chr3 47245862 47246041 -112353742 - B3A SINE B2 -5 193 2 3 945 673 257 33 122 chr3 47246673 47247041 -112352742 - RLTR15 LTR ERVK -19 340 6 3 945 834 237 12 24 chr3 47247047 47247298 -112352485 - MYSERV16_I-int LTR ERVK -5 6545 6298 3 945 942 199 5 0 chr3 47247299 47247510 -112352273 - MYSERV6-int LTR ERVK -923 8036 7825 3 945 333 157 148 55 chr3 47247484 47247612 -112352171 - MYSERV6-int LTR ERVK -1057 7902 7763 3 945 392 274 74 84 chr3 47247612 47247815 -112351968 - RMER4A LTR ERVK -27 439 239 3 945 1035 288 59 65 chr3 47247815 47248501 -112351282 - MYSERV16_I-int LTR ERVK -1575 751 151 3 945 1011 276 65 65 chr3 47248554 47249166 -112350617 - MYSERV6-int LTR ERVK -7075 1884 1273 3 945 687 269 50 47 chr3 47249318 47249595 -112350188 - MYSERV6-int LTR ERVK -1824 1353 1076 3 945 388 292 54 33 chr3 47249895 47250079 -112349704 - RLTR15 LTR ERVK -171 188 1 3 945 202 128 20 41 chr3 47250229 47250278 -112349505 + (CAAA)n Simple_repeat Simple_repeat 2 49 0 3 945 216 374 12 6 chr3 47251848 47252012 -112347771 + (TATATG)n Simple_repeat Simple_repeat 2 166 0 3 945 334 302 72 108 chr3 47252848 47253015 -112346768 + Tigger5 DNA MER2_type 82 242 -2164 3 945 297 268 186 0 chr3 47253011 47253108 -112346675 + Tigger5 DNA MER2_type 2291 2405 -1 3 945 202 209 29 15 chr3 47253642 47253710 -112346073 + (CAAA)n Simple_repeat Simple_repeat 2 70 0 3 945 491 169 32 48 chr3 47254197 47254321 -112345462 + RLTR9A LTR ERVK 247 368 0 3 945 246 357 32 83 chr3 47254464 47254620 -112345163 + B4A SINE B4 8 155 -137 3 945 2740 54 3 0 chr3 47254620 47254972 -112344811 - L1_Mm LINE L1 -1911 3972 3620 3 945 753 59 25 0 chr3 47254976 47255094 -112344689 + L1Md_F2 LINE L1 6462 6582 0 3 945 308 310 69 0 chr3 47255094 47255181 -112344602 + B4A SINE B4 145 237 -55 3 945 267 154 0 0 chr3 47255189 47255254 -112344529 + (TA)n Simple_repeat Simple_repeat 1 65 0 3 945 1640 115 18 22 chr3 47255257 47255532 -112344251 + IAPLTR2_Mm LTR ERVK 1 274 -201 3 945 724 117 42 0 chr3 47255530 47255650 -112344133 - IAPLTR2b LTR ERVK -202 125 1 3 945 1003 133 12 12 chr3 47255654 47255814 -112343969 - IAPLTR3-int LTR ERVK -24 6797 6638 3 945 2908 26 2 148 chr3 47255829 47256283 -112343500 - RLTR10 LTR ERVK -2 388 1 3 945 672 186 0 0 chr3 47256283 47256455 -112343328 + (TA)n Simple_repeat Simple_repeat 2 173 0 3 945 487 50 25 0 chr3 47256686 47256766 -112343017 + L1Md_F3 LINE L1 6486 6567 -17 3 945 3284 43 0 2 chr3 47257138 47257538 -112342245 + L1Md_T LINE L1 6182 6580 -2 3 945 4711 206 50 11 chr3 47257785 47259524 -112340259 - Lx4B LINE L1 -19 6981 5130 3 945 299 308 77 0 chr3 47259545 47259688 -112340095 - MLT1B LTR MaLR -229 161 8 3 945 1106 72 0 0 chr3 47260533 47260672 -112339111 + B1_Mus1 SINE Alu 1 139 -9 3 945 397 38 49 25 chr3 47260672 47260753 -112339030 + (CAAA)n Simple_repeat Simple_repeat 2 84 0 3 945 378 0 0 0 chr3 47260851 47260893 -112338890 + (CA)n Simple_repeat Simple_repeat 2 43 0 3 945 342 0 0 0 chr3 47262124 47262162 -112337621 + (TG)n Simple_repeat Simple_repeat 2 39 0 3 945 207 114 0 0 chr3 47262245 47262280 -112337503 + (GA)n Simple_repeat Simple_repeat 2 36 0 3 945 208 234 21 0 chr3 47265796 47265843 -112333940 + CT-rich Low_complexity Low_complexity 1 48 0 3 945 434 235 110 25 chr3 47265843 47265854 -112333929 - B1_Mus2 SINE Alu -3 144 136 3 945 808 75 15 0 chr3 47265854 47265988 -112333795 + (TC)n Simple_repeat Simple_repeat 2 137 0 3 945 434 235 110 25 chr3 47265988 47266094 -112333689 - B1_Mus2 SINE Alu -12 135 17 3 945 336 24 0 0 chr3 47266568 47266609 -112333174 + (A)n Simple_repeat Simple_repeat 1 41 0 3 945 1419 281 38 9 chr3 47267994 47268442 -112331341 + Lx7 LINE L1 6843 7303 -393 3 945 672 77 0 0 chr3 47268550 47268641 -112331142 + (GA)n Simple_repeat Simple_repeat 2 92 0 3 945 3603 122 2 14 chr3 47268766 47269322 -112330461 + Lx LINE L1 6094 6642 -12 3 945 12640 64 1 1 chr3 47269322 47271696 -112328087 - L1Md_F2 LINE L1 -4 6578 4203 3 945 22 35 0 0 chr3 47271717 47271746 -112328037 + AT_rich Low_complexity Low_complexity 1 29 0 3 945 625 245 106 21 chr3 47272038 47272226 -112327557 - ORR1D1 LTR MaLR -4 370 167 3 945 612 40 0 0 chr3 47272371 47272446 -112327337 + (TAGA)n Simple_repeat Simple_repeat 1 75 0 3 945 433 360 7 13 chr3 47272451 47272603 -112327180 - ORR1D1 LTR MaLR -219 155 5 3 945 492 18 0 0 chr3 47272624 47272681 -112327102 + (TCTA)n Simple_repeat Simple_repeat 3 59 0 3 945 21 36 0 0 chr3 47276639 47276667 -112323116 + AT_rich Low_complexity Low_complexity 1 28 0 3 945 23 78 0 0 chr3 47277128 47277179 -112322604 + AT_rich Low_complexity Low_complexity 1 51 0 3 945 620 302 10 43 chr3 47277402 47277610 -112322173 + B3 SINE B2 8 208 -8 3 945 1017 83 0 0 chr3 47278526 47278671 -112321112 + (GA)n Simple_repeat Simple_repeat 2 146 0 3 945 191 239 15 0 chr3 47279662 47279729 -112320054 + GA-rich Low_complexity Low_complexity 2 69 0 3 945 265 173 107 0 chr3 47279993 47280143 -112319640 + (ATGTG)n Simple_repeat Simple_repeat 4 169 0 3 945 320 389 56 49 chr3 47280184 47280738 -112319045 + L1M4c LINE L1 1308 1865 -4519 3 945 637 313 45 0 chr3 47281182 47281383 -112318400 + B3 SINE B2 4 213 -3 3 945 881 44 9 0 chr3 47281433 47281547 -112318236 + (TC)n Simple_repeat Simple_repeat 1 115 0 3 945 270 0 0 0 chr3 47281547 47281576 -112318207 + (CA)n Simple_repeat Simple_repeat 1 30 0 3 945 32 43 0 0 chr3 47282853 47282899 -112316884 + AT_rich Low_complexity Low_complexity 1 46 0 3 945 283 0 47 23 chr3 47283079 47283122 -112316661 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 3 945 1142 333 112 17 chr3 47283148 47283548 -112316235 - Lx9 LINE L1 -475 7169 6749 3 945 1083 50 0 0 chr3 47283548 47283689 -112316094 - L1Md_T LINE L1 0 6582 6442 3 945 1142 333 112 17 chr3 47283689 47284011 -112315772 - Lx9 LINE L1 -896 6748 6378 3 945 2226 145 0 0 chr3 47284856 47285208 -112314575 - L1VL1 LINE L1 -11 5872 5521 4 945 1066 193 315 24 chr3 47285208 47285675 -112314108 + RLTR6_Mm LTR ERV1 1 603 -51 4 945 996 209 61 51 chr3 47285679 47286011 -112313772 + MMVL30-int LTR ERV1 25 347 -7105 4 945 4837 119 29 13 chr3 47286028 47286812 -112312971 + MMVL30-int LTR ERV1 672 1468 -2230 4 945 8499 85 47 37 chr3 47286887 47289186 -112310597 + MMVL30-int LTR ERV1 960 3698 0 4 945 836 142 6 99 chr3 47289186 47289358 -112310425 + RLTR6_Mm LTR ERV1 1 156 -498 4 945 511 203 213 45 chr3 47289371 47289639 -112310144 + RLTR6_Mm LTR ERV1 276 588 -66 4 945 23943 144 21 9 chr3 47289644 47292367 -112307416 - L1VL1 LINE L1 -362 5521 2756 4 945 2867 55 0 0 chr3 47292367 47292713 -112307070 - ORR1A0 LTR MaLR 0 346 1 4 945 23943 144 21 9 chr3 47292713 47294203 -112305580 - L1VL1 LINE L1 -3128 2755 1263 4 945 183 42 0 0 chr3 47294203 47294227 -112305556 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 4 945 23943 177 107 77 chr3 47294227 47295150 -112304633 - L1VL1 LINE L1 -4621 1262 306 4 945 288 143 0 0 chr3 47295151 47295207 -112304576 + (T)n Simple_repeat Simple_repeat 1 56 0 4 945 2225 129 45 30 chr3 47295209 47295607 -112304176 - Lx LINE L1 -4 6650 6247 4 945 42 82 0 0 chr3 47296305 47296403 -112303380 + AT_rich Low_complexity Low_complexity 1 98 0 4 945 432 0 0 0 chr3 47296449 47296497 -112303286 + (TA)n Simple_repeat Simple_repeat 1 48 0 4 945 25 65 0 0 chr3 47296553 47296599 -112303184 + AT_rich Low_complexity Low_complexity 1 46 0 4 945 198 118 0 0 chr3 47297593 47297627 -112302156 + (TG)n Simple_repeat Simple_repeat 1 34 0 4 945 194 160 20 0 chr3 47297629 47297679 -112302104 + (CAGAGA)n Simple_repeat Simple_repeat 2 52 0 4 945 27 29 0 0 chr3 47298382 47298416 -112301367 + AT_rich Low_complexity Low_complexity 1 34 0 4 945 315 71 0 0 chr3 47298419 47298461 -112301322 + (TG)n Simple_repeat Simple_repeat 1 42 0 4 945 369 361 40 30 chr3 47298461 47298661 -112301122 - B3 SINE B2 -13 203 2 4 945 21 0 0 0 chr3 47298988 47299009 -112300774 + AT_rich Low_complexity Low_complexity 1 21 0 4 945 4922 138 11 48 chr3 47299018 47299877 -112299906 - Lx3B LINE L1 -4 6969 6143 4 945 675 0 0 0 chr3 47299895 47299970 -112299813 + (TTTC)n Simple_repeat Simple_repeat 4 78 0 4 945 5195 198 58 71 chr3 47301054 47301931 -112297852 + RMER12 LTR ERVK 1 898 -424 4 945 465 76 0 0 chr3 47301931 47301997 -112297786 + (TG)n Simple_repeat Simple_repeat 1 66 0 4 945 5195 198 58 71 chr3 47301997 47302459 -112297324 + RMER12 LTR ERVK 899 1322 0 4 945 1230 233 39 83 chr3 47302583 47303051 -112296732 + Lx9 LINE L1 7196 7642 -2 4 945 351 311 81 29 chr3 47303820 47303956 -112295827 + B3A SINE B2 2 144 -54 4 945 604 315 30 5 chr3 47304101 47304302 -112295481 - B3 SINE B2 0 216 11 4 945 282 56 0 0 chr3 47304520 47304556 -112295227 + (GAAAA)n Simple_repeat Simple_repeat 3 38 0 4 945 24 53 0 0 chr3 47305064 47305102 -112294681 + AT_rich Low_complexity Low_complexity 1 38 0 4 945 675 316 5 20 chr3 47305123 47305320 -112294463 + B4A SINE B4 8 201 -91 4 945 206 184 0 0 chr3 47305486 47305497 -112294286 + (CA)n Simple_repeat Simple_repeat 1 11 0 4 945 414 79 0 0 chr3 47305497 47305560 -112294223 + (TAGA)n Simple_repeat Simple_repeat 4 66 0 4 945 206 184 0 0 chr3 47305560 47305586 -112294197 + (CA)n Simple_repeat Simple_repeat 2 27 0 4 945 300 277 26 43 chr3 47305724 47305841 -112293942 - L1M4 LINE L1 -734 5444 5330 4 945 215 241 17 0 chr3 47306908 47306966 -112292817 + CT-rich Low_complexity Low_complexity 4 62 0 4 945 556 337 77 73 chr3 47307233 47307669 -112292114 + L1M2 LINE L1 2575 3029 -3114 4 945 252 0 0 0 chr3 47307669 47307697 -112292086 + (GA)n Simple_repeat Simple_repeat 2 29 0 4 945 556 337 77 73 chr3 47307697 47307710 -112292073 + L1M2 LINE L1 3030 3030 -3113 4 945 877 83 8 8 chr3 47307710 47307843 -112291940 + (GAA)n Simple_repeat Simple_repeat 3 135 0 4 945 556 337 77 73 chr3 47307843 47308093 -112291690 + L1M2 LINE L1 3030 3278 -2865 4 945 1002 148 0 0 chr3 47308232 47308408 -112291375 + (TA)n Simple_repeat Simple_repeat 1 176 0 4 945 349 321 10 125 chr3 47309619 47309811 -112289972 + B3A SINE B2 29 198 0 4 945 534 16 0 0 chr3 47310815 47310878 -112288905 + (TG)n Simple_repeat Simple_repeat 2 64 0 4 945 1092 16 0 0 chr3 47311165 47311291 -112288492 + (GA)n Simple_repeat Simple_repeat 2 127 0 4 945 201 116 47 0 chr3 47312153 47312196 -112287587 + (TA)n Simple_repeat Simple_repeat 1 45 0 4 945 1187 85 11 0 chr3 47312936 47313153 -112286630 - L1_Mus1 LINE L1 0 6567 6390 4 945 419 300 108 0 chr3 47313221 47313351 -112286432 - ID_B1 SINE B4 0 224 81 4 945 336 200 0 0 chr3 47313558 47313623 -112286160 + RMER1B Other Other 603 667 -399 4 945 2738 94 42 0 chr3 47313623 47314007 -112285776 + MTB LTR MaLR 1 400 0 4 945 2407 188 27 10 chr3 47314997 47315040 -112284743 + Lx2 LINE L1 6510 6552 -445 4 945 198 0 0 0 chr3 47315040 47315062 -112284721 + (TAAA)n Simple_repeat Simple_repeat 3 24 0 4 945 2407 188 27 10 chr3 47315062 47315497 -112284286 + Lx2 LINE L1 6553 6995 -2 4 945 29 0 0 0 chr3 47315497 47315526 -112284257 + AT_rich Low_complexity Low_complexity 1 29 0 4 945 402 308 76 0 chr3 47315862 47316047 -112283736 - Lx8 LINE L1 -797 6676 6478 4 945 351 0 0 0 chr3 47316150 47316189 -112283594 + (TAA)n Simple_repeat Simple_repeat 2 40 0 4 945 26 64 0 0 chr3 47316224 47316271 -112283512 + AT_rich Low_complexity Low_complexity 1 47 0 4 945 2778 157 11 4 chr3 47316272 47316740 -112283043 - Lx2A1 LINE L1 -10 6998 6528 4 946 1229 13 25 0 chr3 47317817 47317976 -112281807 + (GA)n Simple_repeat Simple_repeat 1 163 0 4 946 1001 267 18 97 chr3 47318096 47318478 -112281305 + Lx9 LINE L1 7107 7458 -186 4 946 2053 296 45 104 chr3 47319054 47320004 -112279779 + Lx5 LINE L1 5888 6781 -269 4 946 1028 273 79 26 chr3 47320044 47320524 -112279259 + Lx9 LINE L1 5433 5968 -1676 4 946 300 53 0 0 chr3 47320658 47320696 -112279087 + (TTTTG)n Simple_repeat Simple_repeat 3 40 0 4 946 580 333 56 0 chr3 47320707 47320923 -112278860 + Lx9 LINE L1 6461 6688 -956 4 946 218 274 29 19 chr3 47321139 47321243 -112278540 + CT-rich Low_complexity Low_complexity 1 105 0 4 946 24 32 0 0 chr3 47322818 47322849 -112276934 + AT_rich Low_complexity Low_complexity 1 31 0 4 946 544 157 74 8 chr3 47322849 47322971 -112276812 - Lx LINE L1 -9 6645 6516 4 946 2722 38 24 3 chr3 47323201 47323540 -112276243 + ORR1A0 LTR MaLR 1 346 0 4 946 301 315 9 0 chr3 47323550 47323658 -112276125 - PB1D10 SINE Alu -8 109 1 4 946 318 351 113 9 chr3 47323721 47323836 -112275947 + RSINE1 SINE B4 13 139 -26 4 946 279 54 0 0 chr3 47323881 47323918 -112275865 + (CA)n Simple_repeat Simple_repeat 2 38 0 4 946 234 330 43 21 chr3 47324066 47324159 -112275624 + PB1D7 SINE Alu 24 118 -2 4 946 1048 204 263 20 chr3 47324287 47324686 -112275097 - RLTR20B3 LTR ERVK -7 570 75 4 946 2416 192 40 0 chr3 47324725 47325250 -112274533 - MYSERV16_I-int LTR ERVK -5 2321 1776 4 946 556 153 31 24 chr3 47325251 47325378 -112274405 + Lx2 LINE L1 6855 6982 -15 4 946 3777 182 18 18 chr3 47325388 47326128 -112273655 - MYSERV16_I-int LTR ERVK -1586 740 1 4 946 207 0 0 0 chr3 47326475 47326498 -112273285 + (TA)n Simple_repeat Simple_repeat 2 24 0 4 946 833 260 17 7 chr3 47326706 47327008 -112272775 - L1_Mur3 LINE L1 -1454 4426 4122 4 946 6736 145 28 1 chr3 47327028 47329025 -112270758 - L1_Mus4 LINE L1 -7 6629 4585 4 946 4906 169 24 2 chr3 47329029 47329959 -112269824 + L1_Mus4 LINE L1 3629 4578 -1305 4 946 27 29 0 0 chr3 47330321 47330355 -112269428 + AT_rich Low_complexity Low_complexity 1 34 0 4 946 379 329 122 38 chr3 47330551 47330895 -112268888 - Lx9 LINE L1 -847 6797 6425 4 946 749 281 35 16 chr3 47330894 47331158 -112268625 + Lx9 LINE L1 6795 7034 -610 4 946 195 253 0 0 chr3 47331782 47331861 -112267922 + (TA)n Simple_repeat Simple_repeat 1 79 0 4 946 405 102 0 0 chr3 47332507 47332566 -112267217 + (T)n Simple_repeat Simple_repeat 1 59 0 4 946 844 297 32 43 chr3 47332588 47332958 -112266825 + ORR1D2 LTR MaLR 1 366 -4 4 946 966 306 81 33 chr3 47332971 47333330 -112266453 + MTC LTR MaLR 46 421 0 4 946 221 245 0 0 chr3 47333877 47333930 -112265853 + T-rich Low_complexity Low_complexity 1 53 0 4 946 1300 227 0 103 chr3 47333948 47334046 -112265737 - RMER1B Other Other -21 1045 953 4 946 828 0 0 0 chr3 47334046 47334138 -112265645 + (GAAA)n Simple_repeat Simple_repeat 1 92 0 4 946 1300 227 0 103 chr3 47334138 47334437 -112265346 - RMER1B Other Other -114 952 689 4 946 1179 295 45 9 chr3 47334438 47334770 -112265013 + Lx5 LINE L1 6706 7049 -1 4 946 249 83 0 0 chr3 47335197 47335233 -112264550 + (GAAA)n Simple_repeat Simple_repeat 1 36 0 4 946 849 209 93 42 chr3 47336870 47337085 -112262698 + URR1A DNA MER1_type 1 226 0 4 946 1973 221 52 9 chr3 47337339 47337801 -112261982 + Lx4B LINE L1 6501 6982 -76 4 946 537 16 0 0 chr3 47337834 47337896 -112261887 + (TAA)n Simple_repeat Simple_repeat 2 63 0 4 946 34482 65 3 8 chr3 47339310 47344525 -112255258 + L1Md_F3 LINE L1 406 5586 -297 4 946 7973 42 5 2 chr3 47344525 47345506 -112254277 + L1Md_F3 LINE L1 5587 6570 -14 4 946 225 0 0 0 chr3 47346307 47346332 -112253451 + (TA)n Simple_repeat Simple_repeat 1 25 0 4 946 2478 99 20 67 chr3 47346998 47347400 -112252383 - RLTR9A2 LTR ERVK 0 383 1 4 946 458 254 72 24 chr3 47347730 47347855 -112251928 + B1_Mur3 SINE Alu 1 131 -18 4 946 442 326 34 90 chr3 47348645 47348911 -112250872 + MTEb LTR MaLR 1 251 -128 4 946 33 0 0 0 chr3 47349946 47349979 -112249804 + AT_rich Low_complexity Low_complexity 1 33 0 4 946 1533 131 50 8 chr3 47350122 47350384 -112249399 - L1Md_F2 LINE L1 0 6582 6310 4 946 11826 103 24 4 chr3 47350388 47352836 -112246947 - L1Md_F LINE L1 -2966 2917 418 4 946 3628 182 16 9 chr3 47353022 47353708 -112246075 + RLTR17 LTR ERVK 1 691 -1 4 946 846 278 80 40 chr3 47354187 47354382 -112245401 + Lx9 LINE L1 6811 7019 -625 4 946 315 0 0 0 chr3 47354382 47354417 -112245366 + (CAAAA)n Simple_repeat Simple_repeat 5 39 0 4 946 207 0 0 0 chr3 47354417 47354440 -112245343 + (CAAA)n Simple_repeat Simple_repeat 1 23 0 4 946 846 278 80 40 chr3 47354440 47354666 -112245117 + Lx9 LINE L1 7020 7248 -396 4 946 5052 88 1 1 chr3 47356099 47356783 -112243000 + L1_Mus2 LINE L1 5883 6566 0 4 946 618 82 0 0 chr3 47356843 47356928 -112242855 + (TG)n Simple_repeat Simple_repeat 2 86 0 4 946 371 21 21 0 chr3 47357143 47357191 -112242592 + (TAAA)n Simple_repeat Simple_repeat 4 52 0 4 946 7226 30 0 0 chr3 47357245 47358105 -112241678 - L1_Mm LINE L1 -432 5451 4592 4 946 5158 40 0 0 chr3 47358104 47358721 -112241062 + L1Md_A LINE L1 5920 6536 -46 5 946 563 53 0 26 chr3 47358719 47358797 -112240986 - L1Md_F LINE L1 -522 5361 5286 5 946 531 0 0 0 chr3 47358799 47358858 -112240925 + (TTTA)n Simple_repeat Simple_repeat 3 61 0 5 946 1122 103 0 0 chr3 47358860 47359016 -112240767 - B2_Mm2 SINE B2 -38 157 2 5 946 27455 100 8 6 chr3 47359016 47359076 -112240707 - L1Md_F LINE L1 -581 5302 5235 5 946 693 0 0 0 chr3 47359076 47359153 -112240630 + (TA)n Simple_repeat Simple_repeat 2 78 0 5 946 27455 111 12 8 chr3 47359153 47364186 -112235597 - L1Md_F LINE L1 -649 5234 189 5 946 238 196 20 0 chr3 47364452 47364503 -112235280 + (CA)n Simple_repeat Simple_repeat 2 53 0 5 946 797 79 0 9 chr3 47365123 47365238 -112234545 + (TTCTC)n Simple_repeat Simple_repeat 1 114 0 5 946 5217 39 2 0 chr3 47368151 47368773 -112231010 + L1Md_T LINE L1 5960 6582 0 5 946 291 28 0 0 chr3 47369254 47369290 -112230493 + (CA)n Simple_repeat Simple_repeat 2 37 0 5 946 24 0 0 0 chr3 47369350 47369374 -112230409 + AT_rich Low_complexity Low_complexity 1 24 0 5 946 621 232 51 42 chr3 47370638 47370854 -112228929 + Lx9 LINE L1 7290 7507 -137 5 946 207 225 0 0 chr3 47370876 47370916 -112228867 + (TA)n Simple_repeat Simple_repeat 2 41 0 5 946 22 0 0 0 chr3 47372102 47372124 -112227659 + AT_rich Low_complexity Low_complexity 1 22 0 5 946 858 116 23 0 chr3 47373002 47373175 -112226608 + (TAGA)n Simple_repeat Simple_repeat 1 177 0 5 946 221 133 44 0 chr3 47373523 47373568 -112226215 + (TA)n Simple_repeat Simple_repeat 2 48 0 5 946 225 0 0 0 chr3 47374767 47374792 -112224991 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 5 946 1076 60 0 0 chr3 47374792 47374925 -112224858 - B1_Mm SINE Alu -13 134 2 5 946 48 45 0 22 chr3 47376002 47376029 -112223754 + AT_rich Low_complexity Low_complexity 1 26 0 5 946 1116 90 0 0 chr3 47376029 47376173 -112223610 + B1_Mm SINE Alu 2 145 -2 5 946 48 45 0 22 chr3 47376173 47376236 -112223547 + AT_rich Low_complexity Low_complexity 1 63 0 5 946 25 51 0 0 chr3 47377215 47377254 -112222529 + AT_rich Low_complexity Low_complexity 1 39 0 5 946 747 80 0 0 chr3 47377618 47377730 -112222053 + (TC)n Simple_repeat Simple_repeat 2 113 0 5 946 273 335 73 84 chr3 47378218 47378459 -112221324 - MLT1B LTR MaLR -21 369 129 5 946 366 23 0 0 chr3 47378459 47378502 -112221281 + (ATTAG)n Simple_repeat Simple_repeat 2 44 0 5 946 273 335 73 84 chr3 47378502 47378547 -112221236 - MLT1B LTR MaLR -262 128 86 5 946 24 0 0 0 chr3 47378702 47378726 -112221057 + AT_rich Low_complexity Low_complexity 1 24 0 5 946 1688 221 62 25 chr3 47379185 47379589 -112220194 - MTC LTR MaLR -2 419 1 5 946 2874 236 111 27 chr3 47379612 47379674 -112220109 - MTC-int LTR MaLR -368 890 823 5 946 336 83 0 0 chr3 47379674 47379722 -112220061 + (CA)n Simple_repeat Simple_repeat 1 48 0 5 946 2874 236 111 27 chr3 47379722 47380111 -112219672 - MTC-int LTR MaLR -436 822 367 5 946 3338 63 5 5 chr3 47380111 47380555 -112219228 - L1Md_F2 LINE L1 0 6582 6139 5 946 2874 236 111 27 chr3 47380555 47380919 -112218864 - MTC-int LTR MaLR -892 366 6 5 946 1860 209 46 13 chr3 47380921 47381314 -112218469 - MTC LTR MaLR 0 421 16 5 946 401 154 0 0 chr3 47381408 47381486 -112218297 - Lx2A1 LINE L1 -2 7006 6929 5 946 203 258 21 31 chr3 47381758 47381854 -112217929 + A-rich Low_complexity Low_complexity 5 99 0 5 946 210 200 0 32 chr3 47381967 47382029 -112217754 + A-rich Low_complexity Low_complexity 6 65 0 5 946 195 114 0 0 chr3 47382065 47382100 -112217683 + (CAAAAA)n Simple_repeat Simple_repeat 1 35 0 5 946 536 284 99 5 chr3 47382106 47382308 -112217475 - Lx7 LINE L1 -374 7322 7102 5 946 2690 258 33 25 chr3 47382313 47383464 -112216319 - L1_Mur3 LINE L1 -1329 4548 3440 5 946 4308 143 1 46 chr3 47384818 47385101 -112214682 + L1_Mm LINE L1 3914 4196 -1687 5 946 3306 46 5 0 chr3 47385101 47385495 -112214288 + MTA_Mm LTR MaLR 1 396 0 5 946 8980 40 2 2 chr3 47385495 47386593 -112213190 + MTA_Mm-int LTR MaLR 1 1098 0 5 946 3282 41 8 0 chr3 47386593 47386986 -112212797 + MTA_Mm LTR MaLR 1 396 0 5 946 4308 143 1 46 chr3 47386986 47387380 -112212403 + L1_Mm LINE L1 4197 4577 -1306 5 946 4982 34 0 0 chr3 47387380 47387969 -112211814 + L1Md_T LINE L1 5994 6582 0 5 946 4308 145 43 33 chr3 47387969 47388504 -112211279 + L1_Mm LINE L1 4578 5435 -448 5 946 1459 105 0 0 chr3 47388497 47388706 -112211077 + L1_Mus3 LINE L1 5995 6203 -435 5 946 6871 117 20 28 chr3 47388701 47389545 -112210238 - L1_Mur1 LINE L1 -426 5460 4645 5 946 257 0 0 29 chr3 47389545 47389579 -112210204 + (TTTTG)n Simple_repeat Simple_repeat 1 33 0 5 946 6871 117 20 28 chr3 47389579 47389896 -112209887 - L1_Mur1 LINE L1 -1242 4644 4310 5 946 463 208 19 19 chr3 47389896 47389999 -112209784 + RLTR17 LTR ERVK 263 365 -327 5 946 7381 52 7 3 chr3 47389999 47390925 -112208858 - L1Md_F3 LINE L1 -4 6580 5652 5 946 7753 57 4 44 chr3 47390917 47391877 -112207906 + L1Md_F3 LINE L1 4604 5566 -317 5 946 2479 40 27 9 chr3 47391877 47392208 -112207575 + L1Md_F3 LINE L1 6233 6569 -15 5 946 7753 57 4 44 chr3 47392208 47392322 -112207461 + L1_Mm LINE L1 5567 5635 -248 5 946 1649 196 39 21 chr3 47392322 47392655 -112207128 + RLTR17 LTR ERVK 354 692 0 5 946 3679 163 84 5 chr3 47392656 47393302 -112206481 - RMER19A LTR ERVK -40 697 1 5 946 229 297 31 0 chr3 47393754 47393818 -112205965 + RLTR21 LTR ERVK 230 295 -1277 5 946 201 39 0 0 chr3 47394097 47394123 -112205660 + (TG)n Simple_repeat Simple_repeat 1 26 0 5 946 542 264 42 0 chr3 47394139 47394283 -112205500 - B1_Mur4 SINE Alu 0 150 1 5 946 23 33 0 0 chr3 47394630 47394660 -112205123 + AT_rich Low_complexity Low_complexity 1 30 0 5 946 37623 19 3 7 chr3 47395703 47401102 -112198681 + L1Md_A LINE L1 214 5586 -297 5 946 8556 25 0 0 chr3 47401102 47402097 -112197686 + L1Md_A LINE L1 5587 6581 -1 5 946 1829 206 5 25 chr3 47402506 47402899 -112196884 + L1_Mur2 LINE L1 5081 5465 -412 5 946 665 293 42 24 chr3 47402906 47403074 -112196709 - RMER20B LTR ERVK -456 171 1 5 946 621 0 0 0 chr3 47403455 47403524 -112196259 + (TG)n Simple_repeat Simple_repeat 2 70 0 5 946 1193 91 11 0 chr3 47404202 47404378 -112195405 + (GAAA)n Simple_repeat Simple_repeat 1 178 0 5 946 603 74 0 0 chr3 47404378 47404458 -112195325 + (GGAA)n Simple_repeat Simple_repeat 4 84 0 5 946 317 276 52 110 chr3 47404896 47405087 -112194696 - Lx9 LINE L1 -509 7135 6956 5 946 32250 111 20 14 chr3 47405159 47411477 -112188306 - L1Md_F2 LINE L1 -19 6563 214 5 946 504 323 93 31 chr3 47411501 47411760 -112188023 + RLTR12B LTR ERVK 46 320 -208 5 946 393 338 46 21 chr3 47411733 47411972 -112187811 + RLTR12B LTR ERVK 242 486 -42 5 946 28713 95 43 9 chr3 47412148 47415748 -112184035 + L1Md_F2 LINE L1 579 4345 -1538 5 946 3801 78 40 6 chr3 47415748 47416274 -112183509 + L1Md_F2 LINE L1 6039 6582 0 5 946 28713 92 34 11 chr3 47416274 47417531 -112182252 + L1Md_F2 LINE L1 4346 5587 -296 5 946 7235 74 12 2 chr3 47417532 47418497 -112181286 + L1Md_F2 LINE L1 5589 6563 -19 5 946 31 0 0 0 chr3 47418552 47418583 -112181200 + AT_rich Low_complexity Low_complexity 1 31 0 5 946 22 94 0 0 chr3 47419439 47419503 -112180280 + AT_rich Low_complexity Low_complexity 1 64 0 5 946 26 74 0 0 chr3 47419602 47419656 -112180127 + AT_rich Low_complexity Low_complexity 1 54 0 5 946 6811 85 4 8 chr3 47419884 47420811 -112178972 - L1_Mus2 LINE L1 -56 6510 5587 5 946 4732 56 2 0 chr3 47420865 47421450 -112178333 - L1_Mus1 LINE L1 -1 6566 5981 5 946 6526 92 71 10 chr3 47422649 47423641 -112176142 - L1_Mus3 LINE L1 0 6638 5587 5 946 1108 125 0 6 chr3 47423657 47423826 -112175957 - B2_Mm2 SINE B2 -26 169 2 5 946 38 53 0 13 chr3 47425623 47425651 -112174132 + AT_rich Low_complexity Low_complexity 1 28 0 5 946 674 132 69 8 chr3 47425651 47425781 -112174002 + Lx LINE L1 6513 6650 -4 5 946 38 53 0 13 chr3 47425781 47425829 -112173954 + AT_rich Low_complexity Low_complexity 1 48 0 5 946 426 20 0 0 chr3 47425958 47426009 -112173774 + (TAGA)n Simple_repeat Simple_repeat 4 54 0 5 946 2160 145 6 17 chr3 47426131 47426489 -112173294 - RLTR9E LTR ERVK 0 409 56 5 946 24315 67 1 1 chr3 47426489 47430364 -112169419 - L1Md_F2 LINE L1 -16 6566 2691 5 946 411 157 48 41 chr3 47430364 47430506 -112169277 - RLTR9E LTR ERVK -289 131 1 5 946 1091 223 64 8 chr3 47431116 47431383 -112168400 + Lx7 LINE L1 6804 7085 -611 5 946 4030 20 0 0 chr3 47431379 47431866 -112167917 - L1_Mm LINE L1 -2499 3384 2898 5 946 7609 34 1 0 chr3 47431866 47432773 -112167010 + L1Md_T LINE L1 5674 6581 -1 5 946 26 0 0 0 chr3 47432773 47432799 -112166984 + AT_rich Low_complexity Low_complexity 1 26 0 5 946 725 229 29 29 chr3 47432799 47432974 -112166809 + Lx7 LINE L1 7069 7243 -453 5 946 441 0 0 0 chr3 47433037 47433086 -112166697 + (TA)n Simple_repeat Simple_repeat 1 49 0 5 946 25 0 0 0 chr3 47433294 47433319 -112166464 + AT_rich Low_complexity Low_complexity 1 25 0 5 946 260 220 0 0 chr3 47433560 47433610 -112166173 - MT2B2 LTR ERVL -2 582 533 5 946 240 143 14 28 chr3 47433610 47433682 -112166101 + CT-rich Low_complexity Low_complexity 1 71 0 5 946 377 133 13 0 chr3 47433683 47433758 -112166025 + (TA)n Simple_repeat Simple_repeat 2 77 0 5 946 501 17 0 0 chr3 47433768 47433826 -112165957 + (TG)n Simple_repeat Simple_repeat 1 58 0 5 946 635 294 17 90 chr3 47433851 47434150 -112165633 - MT2B2 LTR ERVL -55 529 253 5 946 344 250 87 48 chr3 47434176 47434302 -112165481 - MT2B2 LTR ERVL -401 132 2 5 946 300 319 51 51 chr3 47434307 47434496 -112165287 - L1_Mur3 LINE L1 -498 5658 5455 5 946 873 178 0 0 chr3 47434512 47434573 -112165210 + polypyrimidine Low_complexity Low_complexity 115 175 0 5 946 1172 101 6 0 chr3 47434573 47434751 -112165032 + (TTC)n Simple_repeat Simple_repeat 1 179 0 5 946 873 178 0 0 chr3 47434751 47434863 -112164920 + polypyrimidine Low_complexity Low_complexity 3 114 0 5 946 3141 254 92 46 chr3 47434863 47435374 -112164409 - Lx6 LINE L1 -2 7458 6894 5 946 243 0 0 0 chr3 47435374 47435401 -112164382 + (TC)n Simple_repeat Simple_repeat 2 28 0 5 946 396 0 0 0 chr3 47435401 47435444 -112164339 + (TA)n Simple_repeat Simple_repeat 1 44 0 5 946 3141 254 92 46 chr3 47435444 47435948 -112163835 - Lx6 LINE L1 -567 6893 6396 5 946 21 0 0 0 chr3 47436343 47436364 -112163419 + AT_rich Low_complexity Low_complexity 1 21 0 5 946 482 340 66 25 chr3 47436991 47437187 -112162596 + MTEb LTR MaLR 169 372 -7 5 946 181 77 24 49 chr3 47438601 47438642 -112161141 + T-rich Low_complexity Low_complexity 4 43 0 5 946 28 0 0 0 chr3 47438775 47438803 -112160980 + AT_rich Low_complexity Low_complexity 1 28 0 5 946 522 162 0 0 chr3 47438803 47438920 -112160863 + GA-rich Low_complexity Low_complexity 1 117 0 5 946 467 346 22 0 chr3 47438925 47439061 -112160722 - RSINE1 SINE B4 -25 140 2 5 946 577 216 62 23 chr3 47439902 47440030 -112159753 + B1_Mus2 SINE Alu 6 138 -9 5 946 237 250 138 21 chr3 47441290 47441384 -112158399 + MTE2a LTR MaLR 5 109 -310 5 946 445 289 9 0 chr3 47441503 47441617 -112158166 + MTE2a LTR MaLR 265 379 0 5 946 4395 92 5 5 chr3 47442390 47443022 -112156761 + L1Md_F2 LINE L1 4966 5597 -286 5 946 3728 35 5 0 chr3 47443022 47443456 -112156327 - RLTR10C LTR ERVK 0 436 1 6 946 7178 81 13 1 chr3 47443458 47444434 -112155349 + L1Md_F2 LINE L1 5594 6581 -1 5 946 4364 196 99 20 chr3 47444440 47445417 -112154366 - Lx4B LINE L1 -8 7050 5997 6 946 14370 153 39 15 chr3 47445420 47447485 -112152298 - L1_Mur2 LINE L1 -1740 4137 2051 6 946 486 33 0 0 chr3 47447485 47447545 -112152238 + (TG)n Simple_repeat Simple_repeat 1 60 0 6 118 14370 190 56 19 chr3 47447545 47448934 -112150849 - L1_Mur2 LINE L1 -3827 2050 512 6 947 21 0 0 0 chr3 47449008 47449029 -112150754 + AT_rich Low_complexity Low_complexity 1 21 0 6 947 533 314 103 78 chr3 47449652 47450049 -112149734 - Lx8 LINE L1 -27 7446 7040 6 947 312 289 31 10 chr3 47450200 47450298 -112149485 - RMER15 LTR ERVL -475 100 1 6 947 1999 148 85 24 chr3 47450316 47450460 -112149323 + MTB LTR MaLR 3 143 -257 6 947 2460 78 16 48 chr3 47450460 47450837 -112148946 + RLTR10B2 LTR ERVK 1 365 0 6 947 1999 148 85 24 chr3 47450837 47451067 -112148716 + MTB LTR MaLR 144 400 0 6 947 1933 136 63 0 chr3 47451067 47451399 -112148384 + MTB-int LTR MaLR 1 353 -745 6 947 321 308 73 18 chr3 47451511 47451620 -112148163 - Lx8 LINE L1 -155 7318 7204 6 947 432 0 0 0 chr3 47451631 47451679 -112148104 + (TA)n Simple_repeat Simple_repeat 1 48 0 6 947 6184 40 1 3 chr3 47451681 47452424 -112147359 - L1Md_F3 LINE L1 -25 6559 5818 6 947 7090 52 1 2 chr3 47452419 47453302 -112146481 + L1Md_F3 LINE L1 4804 5685 -198 6 947 2594 87 3 13 chr3 47453363 47453736 -112146047 + MTA_Mm LTR MaLR 28 396 0 6 947 1025 304 95 45 chr3 47453777 47454218 -112145565 - Lx6 LINE L1 -4 7456 6994 6 947 40 21 0 0 chr3 47454296 47454343 -112145440 + AT_rich Low_complexity Low_complexity 1 47 0 6 947 1073 286 48 36 chr3 47454420 47454949 -112144834 + Lx9 LINE L1 5396 5967 -1677 6 947 22 0 0 0 chr3 47454995 47455017 -112144766 + AT_rich Low_complexity Low_complexity 1 22 0 6 947 198 0 0 0 chr3 47455088 47455110 -112144673 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 6 947 856 281 31 9 chr3 47455120 47455343 -112144440 + Lx9 LINE L1 6461 6688 -956 6 947 3506 258 63 2 chr3 47455517 47456491 -112143292 + Lx2B LINE L1 5837 6869 -131 6 947 579 78 0 0 chr3 47457143 47457233 -112142550 + (GA)n Simple_repeat Simple_repeat 1 90 0 6 947 299 284 28 56 chr3 47457867 47457975 -112141808 + PB1D10 SINE Alu 13 117 0 6 947 25 51 0 0 chr3 47458019 47458058 -112141725 + AT_rich Low_complexity Low_complexity 1 39 0 6 947 548 319 36 0 chr3 47458573 47458711 -112141072 - B3 SINE B2 -11 205 63 6 947 261 302 36 96 chr3 47458985 47459123 -112140660 - Tigger6b DNA MER2_type -1305 292 173 6 947 225 0 0 0 chr3 47459206 47459231 -112140552 + (TAGA)n Simple_repeat Simple_repeat 2 26 0 6 947 2103 100 53 24 chr3 47459750 47460137 -112139646 - RLTR1B LTR ERV1 0 512 55 6 947 3412 35 0 0 chr3 47460137 47460533 -112139250 - MTA_Mm LTR MaLR 0 396 1 6 947 9108 35 5 0 chr3 47460533 47461626 -112138157 - MTA_Mm-int LTR MaLR 0 1098 1 6 947 3244 28 2 62 chr3 47461626 47462047 -112137736 - MTA_Mm LTR MaLR 0 396 1 6 947 827 32 91 68 chr3 47462047 47462089 -112137694 - RLTR1B LTR ERV1 -458 54 3 6 947 35 98 0 0 chr3 47463057 47463169 -112136614 + AT_rich Low_complexity Low_complexity 1 112 0 6 947 995 113 7 0 chr3 47463217 47463359 -112136424 + B1_Mus2 SINE Alu 5 147 0 6 947 601 330 94 47 chr3 47463359 47463621 -112136162 + L1M2 LINE L1 3680 3939 -2204 6 947 2466 45 38 3 chr3 47463621 47463936 -112135847 + L1_Mus1 LINE L1 6241 6566 -1 6 947 601 330 94 47 chr3 47463936 47464289 -112135494 + L1M2 LINE L1 3940 4323 -1820 6 947 29 28 0 0 chr3 47464289 47464325 -112135458 + AT_rich Low_complexity Low_complexity 1 36 0 6 947 334 321 44 19 chr3 47464349 47464508 -112135275 + Lx9 LINE L1 7080 7242 -402 6 947 2744 214 122 35 chr3 47464526 47465388 -112134395 + RMER13A LTR ERVK 5 908 0 6 947 571 264 19 101 chr3 47465445 47465677 -112134106 + Lx9 LINE L1 7304 7523 -121 6 947 528 16 0 0 chr3 47465677 47465738 -112134045 + (TG)n Simple_repeat Simple_repeat 2 62 0 6 947 571 264 19 101 chr3 47465738 47465871 -112133912 + Lx9 LINE L1 7524 7639 -5 6 947 229 291 0 0 chr3 47465978 47466064 -112133719 + L1M2 LINE L1 4417 4502 -1641 6 947 22 0 0 0 chr3 47467289 47467311 -112132472 + AT_rich Low_complexity Low_complexity 1 22 0 6 947 1058 80 0 7 chr3 47469564 47469715 -112130068 + (TTTC)n Simple_repeat Simple_repeat 3 152 0 6 947 717 45 0 0 chr3 47469716 47469805 -112129978 + (TTTTG)n Simple_repeat Simple_repeat 2 90 0 6 947 1045 115 0 0 chr3 47469805 47469944 -112129839 - B1_Mus1 SINE Alu -9 139 1 6 947 236 192 20 20 chr3 47470701 47470802 -112128981 + (TA)n Simple_repeat Simple_repeat 2 102 0 6 947 319 260 49 20 chr3 47470947 47471049 -112128734 + URR1A DNA MER1_type 1 105 -121 6 947 180 0 0 0 chr3 47473215 47473235 -112126548 + (TA)n Simple_repeat Simple_repeat 2 21 0 6 947 370 178 30 37 chr3 47473971 47474105 -112125678 + (TATG)n Simple_repeat Simple_repeat 4 136 0 6 947 227 196 0 21 chr3 47474224 47474271 -112125512 - MTE2b LTR MaLR -332 47 2 6 947 213 321 85 12 chr3 47474296 47474378 -112125405 - BC1_Mm scRNA scRNA -62 90 3 6 947 24 32 0 0 chr3 47474982 47475013 -112124770 + AT_rich Low_complexity Low_complexity 1 31 0 6 947 1627 127 124 0 chr3 47476002 47476293 -112123490 + IAPEY3_LTR LTR ERVK 1 327 -5 6 947 382 205 24 46 chr3 47476547 47476653 -112123130 + B1_Mm SINE Alu 1 113 -35 6 947 1557 256 89 37 chr3 47476679 47477141 -112122642 + RMER19C LTR ERVK 126 611 0 6 947 29 0 0 0 chr3 47477315 47477344 -112122439 + AT_rich Low_complexity Low_complexity 1 29 0 6 947 21 71 0 0 chr3 47479430 47479472 -112120311 + AT_rich Low_complexity Low_complexity 1 42 0 6 947 2728 79 10 27 chr3 47479882 47480169 -112119614 + MTB LTR MaLR 1 286 -114 6 947 1889 175 9 75 chr3 47480169 47480607 -112119176 + RLTR9E LTR ERVK 1 409 0 6 947 2728 79 10 27 chr3 47480607 47480723 -112119060 + MTB LTR MaLR 287 397 -3 6 947 25 51 0 0 chr3 47480910 47480949 -112118834 + AT_rich Low_complexity Low_complexity 1 39 0 6 947 189 265 0 0 chr3 47482018 47482067 -112117716 + L3 LINE CR1 1074 1122 -3367 6 947 2154 93 51 3 chr3 47482281 47482593 -112117190 + ORR1A2 LTR MaLR 1 327 0 6 947 8308 42 2 2 chr3 47482616 47484236 -112115547 - L1Md_F2 LINE L1 0 6582 4964 6 947 313 93 0 53 chr3 47484236 47484293 -112115490 + ORR1A1 LTR MaLR 293 346 0 6 947 271 255 90 20 chr3 47484538 47484638 -112115145 - Lx8 LINE L1 -984 6489 6383 6 947 242 328 60 15 chr3 47484666 47484799 -112114984 + MLT1A0 LTR MaLR 227 365 0 6 947 701 276 5 45 chr3 47485256 47485457 -112114326 + B3 SINE B2 6 198 -18 6 947 5655 142 8 6 chr3 47485458 47486367 -112113416 + Lx LINE L1 5732 6642 -12 6 947 43 0 0 0 chr3 47486408 47486451 -112113332 + AT_rich Low_complexity Low_complexity 1 43 0 6 947 724 338 107 54 chr3 47486704 47487276 -112112507 - Lx8 LINE L1 -26 7447 6846 6 947 181 204 73 18 chr3 47487574 47487629 -112112154 - L3 LINE CR1 -5 4484 4427 6 947 23 68 0 0 chr3 47488254 47488298 -112111485 + AT_rich Low_complexity Low_complexity 1 44 0 6 947 2272 228 48 57 chr3 47488493 47489103 -112110680 - RLTR18 LTR ERVK -12 604 1 6 947 292 303 111 22 chr3 47489102 47489237 -112110546 + B1_Mm SINE Alu 1 147 0 6 947 27 49 0 0 chr3 47489251 47489292 -112110491 + AT_rich Low_complexity Low_complexity 1 41 0 6 947 24 0 0 0 chr3 47489456 47489480 -112110303 + AT_rich Low_complexity Low_complexity 1 24 0 6 947 269 268 131 40 chr3 47489552 47489727 -112110056 + B2_Mm2 SINE B2 2 188 -28 6 947 637 136 62 41 chr3 47489788 47489934 -112109849 - L1_Mus3 LINE L1 -7 6631 6483 6 947 1232 76 0 6 chr3 47490039 47490210 -112109573 - L1_Mus1 LINE L1 0 6567 6398 6 947 237 119 14 82 chr3 47490443 47490516 -112109267 + (TTTG)n Simple_repeat Simple_repeat 4 71 0 6 947 805 288 78 35 chr3 47490555 47490912 -112108871 - MTD LTR MaLR -14 386 1 6 947 690 285 87 49 chr3 47490914 47490970 -112108813 - MTD-int LTR MaLR -2 1256 1210 6 947 1254 94 39 0 chr3 47490970 47491150 -112108633 - B2_Mm1t SINE B2 -6 187 1 6 947 855 295 131 42 chr3 47491150 47492086 -112107697 - MTD-int LTR MaLR -49 1209 12 6 947 860 282 184 17 chr3 47492099 47492453 -112107330 - MTD LTR MaLR -4 415 3 6 947 256 219 70 40 chr3 47492584 47492684 -112107099 + L1ME3 LINE L1 5879 5981 -181 6 947 2297 246 30 41 chr3 47492777 47493418 -112106365 - Lx4B LINE L1 -423 6635 6002 6 947 1161 263 53 12 chr3 47493423 47493746 -112106037 + Lx3C LINE L1 6639 6974 -2 6 947 332 335 38 6 chr3 47494181 47494340 -112105443 + B4 SINE B4 11 174 -118 6 947 255 224 265 0 chr3 47494454 47494552 -112105231 - RCHARR1 DNA MER1_type -373 601 478 6 947 252 152 0 0 chr3 47495269 47495315 -112104468 - PB1D9 SINE Alu 0 120 75 6 947 996 265 32 19 chr3 47495329 47495637 -112104146 - Lx6 LINE L1 -4 7456 7145 6 947 332 232 16 16 chr3 47495635 47495762 -112104021 + L1_Mur3 LINE L1 3357 3483 -2394 6 947 233 70 70 0 chr3 47495794 47495851 -112103932 + (CAAAAA)n Simple_repeat Simple_repeat 6 66 0 6 947 1351 205 82 15 chr3 47495852 47496193 -112103590 + L1_Mur3 LINE L1 3865 4228 -1652 6 947 486 0 0 0 chr3 47496199 47496253 -112103530 + (TA)n Simple_repeat Simple_repeat 2 55 0 6 947 217 349 0 15 chr3 47496624 47496691 -112103092 + ID4_ SINE ID 4 69 -14 6 947 3365 35 2 0 chr3 47496821 47497216 -112102567 - MTA_Mm LTR MaLR 0 396 1 6 947 459 0 0 0 chr3 47497216 47497270 -112102513 - RLTR1B LTR ERV1 -458 54 1 6 947 200 169 45 57 chr3 47498247 47498335 -112101448 + (TTAAA)n Simple_repeat Simple_repeat 4 90 0 6 947 974 113 7 0 chr3 47498397 47498539 -112101244 + B1_Mus2 SINE Alu 5 147 0 6 947 1068 86 0 0 chr3 47499739 47499879 -112099904 + B1_Mm SINE Alu 2 141 -6 6 947 207 0 0 0 chr3 47499883 47499906 -112099877 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 6 947 27 0 0 0 chr3 47500044 47500071 -112099712 + AT_rich Low_complexity Low_complexity 1 27 0 1 947 23 68 0 0 chr3 47500166 47500210 -112099573 + AT_rich Low_complexity Low_complexity 1 44 0 2 947 230 106 0 21 chr3 47500311 47500359 -112099424 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 3 947 257 152 0 43 chr3 47500975 47501044 -112098739 + (TA)n Simple_repeat Simple_repeat 1 66 0 4 947 366 169 0 0 chr3 47501177 47501266 -112098517 + CT-rich Low_complexity Low_complexity 2 90 0 5 947 835 357 71 21 chr3 47501321 47501885 -112097898 - Lx8 LINE L1 -390 7083 6492 6 947 274 241 52 61 chr3 47501906 47502021 -112097762 - L1_Mur3 LINE L1 -416 5464 5351 7 947 852 331 75 40 chr3 47503853 47504253 -112095530 + MTD LTR MaLR 6 419 0 8 947 248 70 0 23 chr3 47504425 47504469 -112095314 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 9 947 1146 112 0 0 chr3 47504757 47504935 -112094848 + (GGAGA)n Simple_repeat Simple_repeat 3 180 0 1 947 336 165 0 0 chr3 47504956 47505047 -112094736 + GA-rich Low_complexity Low_complexity 2 92 0 1 947 210 118 0 0 chr3 47505327 47505361 -112094422 + (CAA)n Simple_repeat Simple_repeat 1 34 0 1 947 180 0 0 0 chr3 47505548 47505568 -112094215 + (TTA)n Simple_repeat Simple_repeat 1 20 0 1 947 4195 170 94 16 chr3 47505815 47506651 -112093132 + Lx2B LINE L1 6089 6990 -10 1 947 432 283 87 5 chr3 47506651 47506836 -112092947 - RMER5 LTR ERV1 -9 525 326 1 947 249 224 30 0 chr3 47507320 47507387 -112092396 + (CAGA)n Simple_repeat Simple_repeat 4 72 0 1 947 395 132 109 11 chr3 47507718 47507810 -112091973 - Lx LINE L1 -61 6593 6515 1 947 2695 103 5 0 chr3 47507837 47508216 -112091567 - L1_Mus3 LINE L1 -6 6632 6252 1 947 7032 58 1 11 chr3 47509615 47510518 -112089265 + L1Md_F2 LINE L1 5687 6580 -2 1 947 6215 148 24 6 chr3 47510531 47512096 -112087687 + Lx LINE L1 5064 6654 0 2 947 235 328 24 16 chr3 47512145 47512269 -112087514 - Lx9 LINE L1 -283 7361 7237 2 947 417 66 0 0 chr3 47512646 47512707 -112087076 + (TTTTA)n Simple_repeat Simple_repeat 3 63 0 2 947 21 36 0 0 chr3 47512788 47512816 -112086967 + AT_rich Low_complexity Low_complexity 1 28 0 2 947 24 32 0 0 chr3 47513370 47513401 -112086382 + AT_rich Low_complexity Low_complexity 1 31 0 2 947 1223 27 0 7 chr3 47513504 47513651 -112086132 + B1_Mus2 SINE Alu 1 146 -1 2 947 452 116 0 111 chr3 47514039 47514165 -112085618 + Lx3A LINE L1 6868 6979 -2 2 947 494 44 29 0 chr3 47514482 47514550 -112085233 + (TTTA)n Simple_repeat Simple_repeat 4 73 0 2 947 17576 167 17 66 chr3 47514552 47519284 -112080499 - Lx LINE L1 -14 6640 2162 2 947 12955 146 24 46 chr3 47519281 47520244 -112079539 - L1VL2 LINE L1 -2140 3743 2867 2 947 1200 97 0 0 chr3 47520244 47520470 -112079313 + (TTTC)n Simple_repeat Simple_repeat 1 226 0 3 947 12955 149 29 54 chr3 47520470 47522926 -112076857 - L1VL2 LINE L1 -3017 2866 420 2 947 288 154 0 0 chr3 47523418 47523470 -112076313 + (TA)n Simple_repeat Simple_repeat 2 53 0 3 947 1914 84 0 8 chr3 47523686 47523951 -112075832 - L1_Mus2 LINE L1 -1 6565 6303 3 947 1107 92 0 0 chr3 47523991 47524133 -112075650 + B1_Mus1 SINE Alu 5 146 -2 3 947 213 39 0 0 chr3 47524192 47524218 -112075565 + (ATTG)n Simple_repeat Simple_repeat 2 27 0 3 947 463 346 105 57 chr3 47525026 47525483 -112074300 - MLT1E1 LTR MaLR 0 654 176 3 947 22 0 0 0 chr3 47526625 47526647 -112073136 + AT_rich Low_complexity Low_complexity 1 22 0 3 947 25 0 0 0 chr3 47526895 47526920 -112072863 + AT_rich Low_complexity Low_complexity 1 25 0 3 947 313 310 0 12 chr3 47527526 47527611 -112072172 - RMER15 LTR ERVL -154 421 338 3 947 3113 276 28 76 chr3 47528303 47529291 -112070492 + RMER1B Other Other 113 1053 -13 3 947 347 268 44 18 chr3 47529411 47529525 -112070258 + MER67C LTR ERV1 465 581 -130 4 947 1052 83 14 0 chr3 47529778 47529923 -112069860 - B1_Mm SINE Alu 0 147 1 4 947 243 198 39 59 chr3 47531180 47531282 -112068501 - Lx9 LINE L1 -123 7521 7422 4 947 345 159 0 0 chr3 47531284 47531347 -112068436 + (TA)n Simple_repeat Simple_repeat 1 63 0 4 947 390 21 0 0 chr3 47532381 47532428 -112067355 + (TG)n Simple_repeat Simple_repeat 1 47 0 4 947 29 0 0 0 chr3 47532861 47532890 -112066893 + AT_rich Low_complexity Low_complexity 1 29 0 4 947 1490 263 97 10 chr3 47533164 47533667 -112066116 - Lx9 LINE L1 -625 7019 6473 4 947 867 282 97 45 chr3 47534494 47534802 -112064981 + ORR1D2 LTR MaLR 35 358 -12 4 947 1306 266 18 18 chr3 47535069 47535406 -112064377 - MTC LTR MaLR -84 337 1 4 947 559 191 18 26 chr3 47535495 47535608 -112064175 + Lx4A LINE L1 6773 6884 -174 4 947 933 130 12 36 chr3 47535603 47535770 -112064013 - Lx4A LINE L1 -283 6775 6613 4 947 370 385 43 43 chr3 47535989 47536220 -112063563 + B4A SINE B4 41 271 -21 5 947 333 0 0 0 chr3 47536223 47536260 -112063523 + (CA)n Simple_repeat Simple_repeat 2 38 0 5 947 223 271 56 14 chr3 47537008 47537079 -112062704 - PB1D10 SINE Alu -22 95 22 5 947 21 36 0 0 chr3 47538281 47538309 -112061474 + AT_rich Low_complexity Low_complexity 1 28 0 5 947 279 257 86 60 chr3 47538455 47538571 -112061212 - Lx9 LINE L1 -1164 6480 6362 5 947 312 219 12 47 chr3 47538928 47539014 -112060769 - Lx9 LINE L1 -260 5587 5505 5 947 315 355 95 61 chr3 47539233 47539380 -112060403 + RSINE1 SINE B4 1 152 -13 5 947 246 62 0 0 chr3 47539385 47539417 -112060366 + (CA)n Simple_repeat Simple_repeat 2 33 0 5 947 971 80 36 21 chr3 47539467 47539607 -112060176 - B1_Mus1 SINE Alu -5 143 2 5 947 4104 49 2 8 chr3 47540114 47540625 -112059158 - L1Md_F2 LINE L1 -1 6581 6074 5 947 438 20 0 0 chr3 47540692 47540743 -112059040 + (TATG)n Simple_repeat Simple_repeat 4 54 0 5 947 30 59 0 0 chr3 47540789 47540840 -112058943 + AT_rich Low_complexity Low_complexity 1 51 0 6 947 441 0 0 0 chr3 47540940 47540989 -112058794 + (TTA)n Simple_repeat Simple_repeat 3 51 0 6 947 207 0 0 0 chr3 47541497 47541520 -112058263 + (TAG)n Simple_repeat Simple_repeat 1 23 0 6 947 2255 178 25 42 chr3 47541520 47541995 -112057788 - Lx2 LINE L1 -7 6990 6524 6 947 297 151 0 0 chr3 47542187 47542240 -112057543 + A-rich Low_complexity Low_complexity 1 53 0 6 947 229 327 9 9 chr3 47543684 47543792 -112055991 + L1M1 LINE L1 5822 5929 -374 6 947 21 0 0 0 chr3 47543999 47544020 -112055763 + AT_rich Low_complexity Low_complexity 1 21 0 6 947 4665 161 21 12 chr3 47544138 47544957 -112054826 + Lx2 LINE L1 6158 6983 -14 6 947 4691 39 2 0 chr3 47545196 47545758 -112054025 - L1Md_T LINE L1 -2 6580 6018 6 947 203 148 0 36 chr3 47545767 47545823 -112053960 + A-rich Low_complexity Low_complexity 1 54 0 6 947 252 0 0 0 chr3 47546486 47546514 -112053269 + (TA)n Simple_repeat Simple_repeat 2 29 0 7 947 185 182 44 22 chr3 47547181 47547226 -112052557 - L2c LINE L2 -15 3372 3327 7 947 198 0 0 0 chr3 47547242 47547264 -112052519 + (TA)n Simple_repeat Simple_repeat 1 22 0 7 947 27 73 0 0 chr3 47548225 47548280 -112051503 + AT_rich Low_complexity Low_complexity 1 55 0 7 947 5946 232 19 8 chr3 47548329 47550156 -112049627 + Lx5 LINE L1 5188 7044 -6 7 947 22 0 0 0 chr3 47550244 47550266 -112049517 + AT_rich Low_complexity Low_complexity 1 22 0 7 947 1651 27 0 0 chr3 47550370 47550558 -112049225 - B2_Mm1a SINE B2 -5 188 1 7 947 220 27 26 26 chr3 47550892 47550930 -112048853 + (TG)n Simple_repeat Simple_repeat 2 39 0 7 947 4227 104 0 0 chr3 47551132 47551716 -112048067 + MT2B2 LTR ERVL 1 584 0 7 947 423 0 0 0 chr3 47552217 47552264 -112047519 + (TG)n Simple_repeat Simple_repeat 2 48 0 7 947 2349 188 73 82 chr3 47552672 47553368 -112046415 + RMER6C LTR ERVK 1 690 0 8 947 396 297 124 72 chr3 47554309 47554640 -112045143 - MLT1B LTR MaLR -42 348 1 8 947 1191 54 0 0 chr3 47554704 47554851 -112044932 - B1_Mus1 SINE Alu -1 147 1 8 947 239 280 118 27 chr3 47554856 47554966 -112044817 - B3 SINE B2 0 216 97 8 947 1069 101 94 11 chr3 47555074 47555254 -112044529 - B2_Mm2 SINE B2 0 195 1 8 947 262 43 0 60 chr3 47556307 47556357 -112043426 + (TTTTG)n Simple_repeat Simple_repeat 4 50 0 8 947 612 27 0 0 chr3 47557324 47557398 -112042385 + (TG)n Simple_repeat Simple_repeat 1 74 0 8 947 269 326 44 7 chr3 47557828 47557964 -112041819 - Lx7 LINE L1 -582 7114 6974 8 947 546 16 0 0 chr3 47558336 47558399 -112041384 + (TCTA)n Simple_repeat Simple_repeat 4 66 0 8 947 365 335 113 59 chr3 47558458 47558934 -112040849 + L1M4 LINE L1 3685 4186 -1960 8 947 247 268 0 0 chr3 47559187 47559243 -112040540 + (TATG)n Simple_repeat Simple_repeat 3 58 0 9 947 22 0 0 0 chr3 47559947 47559969 -112039814 + AT_rich Low_complexity Low_complexity 1 22 0 9 947 5204 64 13 4 chr3 47560363 47561040 -112038743 - L1Md_F2 LINE L1 -13 6569 5887 9 947 541 385 10 14 chr3 47561696 47561904 -112037879 + B3 SINE B2 1 207 -9 9 947 250 357 12 0 chr3 47561996 47562080 -112037703 + B4 SINE B4 2 86 -206 9 947 216 246 0 0 chr3 47562080 47562137 -112037646 + (CA)n Simple_repeat Simple_repeat 1 57 0 9 947 551 27 14 0 chr3 47562137 47562210 -112037573 + (GA)n Simple_repeat Simple_repeat 2 75 0 9 947 274 328 7 109 chr3 47562212 47562349 -112037434 + B4 SINE B4 96 218 -74 9 947 235 275 43 11 chr3 47564405 47564497 -112035286 - MLT1E2 LTR MaLR 0 505 411 9 947 292 365 50 46 chr3 47564690 47564908 -112034875 - MLT1E2 LTR MaLR -390 237 19 9 947 304 83 0 0 chr3 47567186 47567233 -112032550 + RMER1A Other Other 978 1055 -11 9 947 266 180 16 80 chr3 47567619 47567688 -112032095 + B3 SINE B2 23 87 -111 9 947 3384 123 27 2 chr3 47567753 47568274 -112031509 + Lx2 LINE L1 6110 6643 -354 1 947 1234 172 9 0 chr3 47568274 47568489 -112031294 + Lx2 LINE L1 6775 6991 -6 1 947 1350 62 20 10 chr3 47568622 47568818 -112030965 - L1Md_F2 LINE L1 -3 6579 6382 1 947 21138 75 2 1 chr3 47568818 47572400 -112027383 - L1Md_F2 LINE L1 0 6582 2996 1 947 7666 63 3 1 chr3 47572395 47573555 -112026228 - L1Md_F2 LINE L1 -2 6580 5421 1 947 4254 39 4 0 chr3 47573555 47574068 -112025715 + L1Md_T LINE L1 6068 6582 0 1 947 842 102 0 8 chr3 47574085 47574214 -112025569 - L1Md_F2 LINE L1 -1936 3947 3820 1 947 21 36 0 0 chr3 47574779 47574807 -112024976 + AT_rich Low_complexity Low_complexity 1 28 0 1 947 26 0 0 0 chr3 47575904 47575930 -112023853 + AT_rich Low_complexity Low_complexity 1 26 0 1 947 5960 260 53 22 chr3 47576285 47578254 -112021529 - Lx6 LINE L1 -11 7449 5410 1 947 25 0 0 0 chr3 47578626 47578651 -112021132 + AT_rich Low_complexity Low_complexity 1 25 0 1 948 5247 215 30 17 chr3 47579486 47580688 -112019095 + Lx2B LINE L1 5778 7000 0 1 948 227 299 89 70 chr3 47582348 47582506 -112017277 - Charlie8 DNA MER1_type -724 1704 1544 1 948 435 87 0 0 chr3 47582635 47582704 -112017079 + (CA)n Simple_repeat Simple_repeat 1 69 0 1 948 239 0 0 31 chr3 47583121 47583153 -112016630 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1 948 1108 62 14 20 chr3 47583153 47583290 -112016493 - B1_Mus1 SINE Alu -9 139 1 1 948 21 36 0 0 chr3 47583315 47583343 -112016440 + AT_rich Low_complexity Low_complexity 1 28 0 1 948 233 277 14 24 chr3 47583574 47583791 -112015992 + CT-rich Low_complexity Low_complexity 1 214 0 1 948 725 98 9 0 chr3 47584087 47584199 -112015584 + (TCC)n Simple_repeat Simple_repeat 3 115 0 1 948 189 94 0 0 chr3 47585130 47585162 -112014621 + (TTA)n Simple_repeat Simple_repeat 2 33 0 1 948 32572 92 10 5 chr3 47585165 47591236 -112008547 - L1Md_F2 LINE L1 -25 6557 455 1 948 399 281 51 15 chr3 47591278 47591423 -112008360 - MT2B2 LTR ERVL -70 531 380 1 948 23 33 0 0 chr3 47591523 47591553 -112008230 + AT_rich Low_complexity Low_complexity 1 30 0 1 948 22 0 0 0 chr3 47591636 47591658 -112008125 + AT_rich Low_complexity Low_complexity 1 22 0 1 948 26 88 0 0 chr3 47591941 47592009 -112007774 + AT_rich Low_complexity Low_complexity 1 68 0 1 948 4746 273 70 25 chr3 47592321 47592829 -112006954 - Lx6 LINE L1 -177 7283 6745 1 948 234 0 0 0 chr3 47592829 47592855 -112006928 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 1 948 4746 273 70 25 chr3 47592855 47593810 -112005973 - Lx6 LINE L1 -716 6744 5754 1 948 2547 34 6 6 chr3 47593810 47594135 -112005648 - IAPEY2_LTR LTR ERVK 0 357 33 1 948 3438 111 16 28 chr3 47594146 47594877 -112004906 - IAPEY3-int LTR ERVK 0 7581 6908 1 948 1285 120 5 0 chr3 47594879 47595063 -112004720 - IAPEY3-int LTR ERVK -4395 3285 3101 1 948 3803 44 2 0 chr3 47595058 47595515 -112004268 - IAPEY3-int LTR ERVK -2438 5242 4785 1 948 13147 113 19 28 chr3 47595512 47597504 -112002279 - IAPEY3-int LTR ERVK -5183 2497 524 1 948 702 141 51 45 chr3 47597503 47597659 -112002124 - IAPLTR4_I LTR ERVK -1290 180 24 1 948 2386 44 28 6 chr3 47597661 47597979 -112001804 - IAPEY2_LTR LTR ERVK 0 357 33 1 948 5410 213 30 62 chr3 47597990 47599443 -112000340 - Lx6 LINE L1 -124 5756 4351 1 948 2628 54 0 0 chr3 47600328 47600659 -111999124 - L1Md_T LINE L1 0 6582 6252 1 948 2526 127 80 43 chr3 47601565 47601652 -111998131 + Lx3A LINE L1 6467 6560 -421 1 948 3422 20 5 0 chr3 47601652 47602046 -111997737 - MTA_Mm LTR MaLR 0 396 1 1 948 9479 18 2 0 chr3 47602046 47603142 -111996641 - MTA_Mm-int LTR MaLR 0 1098 1 1 948 3453 15 5 0 chr3 47603142 47603536 -111996247 - MTA_Mm LTR MaLR 0 396 1 1 948 2526 127 80 43 chr3 47603536 47603933 -111995850 + Lx3A LINE L1 6561 6969 -12 1 948 264 30 0 0 chr3 47603999 47604032 -111995751 + (CA)n Simple_repeat Simple_repeat 2 34 0 1 948 240 261 6 128 chr3 47604035 47604215 -111995568 - Lx7 LINE L1 -280 7416 7259 1 948 5260 238 99 79 chr3 47604294 47605985 -111993798 - Lx6 LINE L1 -1981 3899 2230 1 948 2122 124 0 22 chr3 47605985 47606347 -111993436 - L1_Mus4 LINE L1 0 6636 6283 1 948 5260 242 98 74 chr3 47606347 47607414 -111992369 - Lx6 LINE L1 -3651 2229 1083 1 948 204 200 0 0 chr3 47607452 47607497 -111992286 + (TA)n Simple_repeat Simple_repeat 2 46 0 1 948 1323 258 15 3 chr3 47607544 47607875 -111991908 + Lx9 LINE L1 6993 7327 -317 1 948 214 179 77 0 chr3 47607885 47607963 -111991820 + (TA)n Simple_repeat Simple_repeat 1 84 0 1 948 211 422 0 0 chr3 47608046 47608129 -111991654 - ID4 SINE ID 0 83 1 1 948 216 86 0 0 chr3 47609253 47609288 -111990495 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1 948 27 62 0 0 chr3 47609485 47609533 -111990250 + AT_rich Low_complexity Low_complexity 1 48 0 1 948 23 54 0 0 chr3 47610187 47610224 -111989559 + AT_rich Low_complexity Low_complexity 1 37 0 1 948 22 0 0 0 chr3 47610273 47610295 -111989488 + AT_rich Low_complexity Low_complexity 1 22 0 1 948 3422 142 10 0 chr3 47610378 47610989 -111988794 - Lx3_Mus LINE L1 -1089 5920 5309 1 948 4426 169 63 9 chr3 47610989 47612469 -111987314 - Lx3_Mus LINE L1 -3651 2235 690 1 948 39 74 0 0 chr3 47612509 47612590 -111987193 + AT_rich Low_complexity Low_complexity 1 81 0 1 948 279 0 0 0 chr3 47612590 47612621 -111987162 + (TC)n Simple_repeat Simple_repeat 2 32 0 1 948 180 77 0 0 chr3 47612623 47612649 -111987134 + (TG)n Simple_repeat Simple_repeat 1 26 0 1 948 222 358 86 39 chr3 47612653 47612781 -111987002 - RSINE1 SINE B4 -20 145 12 1 948 1153 252 75 32 chr3 47613394 47613702 -111986081 - Lx9 LINE L1 -219 7425 7105 1 948 287 296 68 0 chr3 47613708 47613796 -111985987 - Lx9 LINE L1 -475 7169 7076 1 948 21 0 0 0 chr3 47615217 47615238 -111984545 + AT_rich Low_complexity Low_complexity 1 21 0 1 948 1475 178 59 53 chr3 47615503 47615860 -111983923 - RLTR15 LTR ERVK 0 359 1 1 948 542 167 9 0 chr3 47616279 47616387 -111983396 + (TA)n Simple_repeat Simple_repeat 2 110 0 1 948 1527 130 208 79 chr3 47616658 47616976 -111982807 + RLTR10D LTR ERVK 1 359 0 1 948 1120 71 6 13 chr3 47616976 47617132 -111982651 + IAP-d-int LTR ERVK 1 155 -6387 1 948 736 174 44 17 chr3 47617132 47617360 -111982423 + IAP-d-int LTR ERVK 106 503 -6039 1 948 7723 61 32 1 chr3 47617360 47618344 -111981439 + IAP-d-int LTR ERVK 5007 6021 -521 1 948 3014 74 56 0 chr3 47618347 47618740 -111981043 + IAP-d-int LTR ERVK 6128 6542 0 1 948 2306 117 3 65 chr3 47618740 47619123 -111980660 + RLTR10D LTR ERVK 1 359 0 1 948 23 0 0 0 chr3 47619181 47619204 -111980579 + AT_rich Low_complexity Low_complexity 1 23 0 1 948 941 324 50 9 chr3 47620331 47620652 -111979131 - MTEa LTR MaLR -10 369 36 1 948 1266 333 80 11 chr3 47622057 47622142 -111977641 + Lx8 LINE L1 6089 6185 -1288 1 948 3194 160 10 29 chr3 47622142 47622739 -111977044 - Lx LINE L1 0 6654 6069 1 948 1266 333 80 11 chr3 47622739 47623352 -111976431 + Lx8 LINE L1 6186 6834 -639 1 948 1808 231 107 31 chr3 47624048 47624571 -111975212 - RLTR20B3 LTR ERVK -13 564 2 1 948 39 0 0 0 chr3 47625754 47625793 -111973990 + AT_rich Low_complexity Low_complexity 1 39 0 1 948 737 299 54 9 chr3 47626348 47626571 -111973212 + MTEb LTR MaLR 147 379 0 1 948 264 333 113 40 chr3 47627230 47627380 -111972403 - LTR16E1 LTR ERVL -72 466 306 1 948 442 381 31 44 chr3 47627391 47627616 -111972167 - LTR16E1 LTR ERVL -309 229 8 1 948 22 35 0 0 chr3 47627701 47627730 -111972053 + AT_rich Low_complexity Low_complexity 1 29 0 1 948 778 290 89 22 chr3 47628256 47628616 -111971167 - RCHARR1 DNA MER1_type -34 940 557 1 948 2923 39 6 0 chr3 47628624 47628985 -111970798 - L1Md_A LINE L1 -1 6581 6219 1 948 585 400 15 13 chr3 47629013 47629411 -111970372 + Lx8 LINE L1 6492 6890 -583 1 948 1245 189 24 16 chr3 47629472 47629720 -111970063 + ORR1A4 LTR MaLR 1 250 -79 1 948 1055 151 5 5 chr3 47629719 47629905 -111969878 - ORR1A4-int LTR MaLR -1777 186 1 1 948 1766 156 44 12 chr3 47629905 47630224 -111969559 - ORR1A4 LTR MaLR 0 329 1 1 948 847 284 65 14 chr3 47630225 47630593 -111969190 + RLTR42-int LTR ERVK 5066 5452 -70 1 948 1908 192 34 34 chr3 47631916 47632298 -111967485 - MTC LTR MaLR 0 421 40 1 948 1043 100 0 0 chr3 47633244 47633384 -111966399 + B1_Mus1 SINE Alu 1 140 -8 1 948 261 0 0 0 chr3 47633384 47633413 -111966370 + (CAA)n Simple_repeat Simple_repeat 2 30 0 1 948 22 56 0 0 chr3 47633501 47633537 -111966246 + AT_rich Low_complexity Low_complexity 1 36 0 1 948 953 129 7 0 chr3 47635076 47635223 -111964560 + B1_Mus1 SINE Alu 1 148 0 1 948 337 20 0 39 chr3 47635239 47635291 -111964492 + (CAAA)n Simple_repeat Simple_repeat 3 52 0 1 948 554 289 26 26 chr3 47635309 47635465 -111964318 + RSINE1 SINE B4 10 165 0 1 948 201 281 107 19 chr3 47635506 47635656 -111964127 + L2c LINE L2 3259 3426 0 1 948 2581 303 40 43 chr3 47635703 47636911 -111962872 + Lx8 LINE L1 4007 5190 -690 1 948 311 0 26 0 chr3 47636911 47636950 -111962833 + (CAAAA)n Simple_repeat Simple_repeat 2 41 0 1 948 2581 339 62 65 chr3 47636950 47639139 -111960644 + Lx8 LINE L1 5157 7320 -153 1 948 2550 199 77 19 chr3 47639257 47639832 -111959951 + Lx2B LINE L1 6388 6995 -5 1 948 3418 157 128 40 chr3 47640580 47641409 -111958374 + RLTR13D6 LTR ERVK 1 902 0 1 948 21 0 0 0 chr3 47641930 47641951 -111957832 + AT_rich Low_complexity Low_complexity 1 21 0 1 948 246 268 45 68 chr3 47642032 47642120 -111957663 + B3 SINE B2 131 216 0 1 948 228 67 0 0 chr3 47642485 47642515 -111957268 + (TA)n Simple_repeat Simple_repeat 2 31 0 1 948 543 337 63 82 chr3 47642873 47643300 -111956483 + MER67D LTR ERV1 12 430 -84 1 948 36 0 0 0 chr3 47643379 47643415 -111956368 + AT_rich Low_complexity Low_complexity 1 36 0 1 948 455 138 11 0 chr3 47643507 47643594 -111956189 + (TCTA)n Simple_repeat Simple_repeat 1 88 0 1 948 458 143 27 45 chr3 47643690 47643800 -111955983 - L1Md_F2 LINE L1 -2 6580 6473 1 948 324 325 67 0 chr3 47643973 47644093 -111955690 - RMER10B LTR ERVL -2 396 269 1 948 506 219 73 0 chr3 47644335 47644472 -111955311 - Lx9 LINE L1 -179 7465 7319 1 948 542 15 15 0 chr3 47644474 47644541 -111955242 + (CA)n Simple_repeat Simple_repeat 2 69 0 1 948 555 102 0 0 chr3 47644561 47644649 -111955134 + (GA)n Simple_repeat Simple_repeat 1 88 0 1 948 1703 269 96 19 chr3 47644655 47645250 -111954533 - Lx9 LINE L1 -343 7301 6661 1 948 1090 182 28 0 chr3 47645250 47645431 -111954352 + RLTR20B2 LTR ERVK 1 186 -374 1 948 4014 41 6 0 chr3 47645471 47645957 -111953826 - L1Md_F2 LINE L1 0 6582 6094 1 948 2597 78 0 16 chr3 47645957 47646323 -111953460 + L1_Mm LINE L1 2411 2770 -3113 1 948 400 212 80 10 chr3 47646323 47646423 -111953360 + RLTR20B2 LTR ERVK 171 277 -283 1 948 513 304 72 0 chr3 47646431 47646612 -111953171 - Lx9 LINE L1 -987 6657 6464 1 948 21 0 0 0 chr3 47646684 47646705 -111953078 + AT_rich Low_complexity Low_complexity 1 21 0 1 948 268 253 35 46 chr3 47647476 47647563 -111952220 - MLT1A1 LTR MaLR -14 394 309 1 948 215 79 26 0 chr3 47647878 47647916 -111951867 + (CAAA)n Simple_repeat Simple_repeat 1 39 0 1 948 183 100 0 0 chr3 47648072 47648102 -111951681 + (CA)n Simple_repeat Simple_repeat 1 30 0 1 948 231 262 0 0 chr3 47648103 47648164 -111951619 + GA-rich Low_complexity Low_complexity 2 62 0 1 948 934 248 47 39 chr3 47648765 47649021 -111950762 - RLTR20D LTR ERVK 0 568 311 2 948 556 232 13 6 chr3 47649029 47649185 -111950598 - Lx9 LINE L1 -177 7467 7311 2 948 444 19 0 0 chr3 47649201 47649254 -111950529 + (TTTA)n Simple_repeat Simple_repeat 2 54 0 2 948 236 348 85 43 chr3 47649261 47649402 -111950381 - MER90a LTR ERV1 -396 218 72 2 948 256 274 75 75 chr3 47649703 47649849 -111949934 - L1MCb LINE L1 -5857 188 43 2 948 350 157 83 73 chr3 47650052 47650148 -111949635 + PB1D9 SINE Alu 18 114 -6 2 948 1290 80 0 0 chr3 47650149 47650325 -111949458 + (GAAA)n Simple_repeat Simple_repeat 1 176 0 2 948 217 245 0 0 chr3 47650328 47650381 -111949402 + GA-rich Low_complexity Low_complexity 4 56 0 2 948 2226 227 24 40 chr3 47650592 47651014 -111948769 + L1_Mur3 LINE L1 3418 3838 -2042 2 948 1010 108 0 0 chr3 47651014 47651153 -111948630 + B1_Mus1 SINE Alu 3 141 -7 2 948 231 36 0 0 chr3 47651154 47651182 -111948601 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 2 948 2226 227 24 40 chr3 47651182 47651435 -111948348 + L1_Mur3 LINE L1 3839 4084 -1796 2 948 693 292 62 127 chr3 47651459 47651891 -111947892 + RLTR23 LTR ERV1 27 430 0 2 948 1740 163 68 8 chr3 47651891 47652274 -111947509 + L1_Mur3 LINE L1 4080 4485 -1395 2 948 1549 171 41 66 chr3 47652280 47652599 -111947184 + ORR1A3 LTR MaLR 8 318 -8 2 948 4295 218 15 134 chr3 47652603 47653477 -111946306 + L1_Mur3 LINE L1 4484 5327 -553 2 948 957 9 0 0 chr3 47653477 47653587 -111946196 + (TTTC)n Simple_repeat Simple_repeat 3 112 0 2 948 4295 218 15 134 chr3 47653587 47653729 -111946054 + L1_Mur3 LINE L1 5328 5341 -539 2 948 2513 114 0 3 chr3 47653729 47654088 -111945695 - L1_Mus2 LINE L1 0 6566 6209 2 948 4295 218 15 134 chr3 47654088 47654612 -111945171 + L1_Mur3 LINE L1 5342 5842 -38 2 948 406 286 0 0 chr3 47654609 47654714 -111945069 + Lx6 LINE L1 6627 6731 -729 2 948 207 0 0 0 chr3 47654714 47654737 -111945046 + (CA)n Simple_repeat Simple_repeat 2 24 0 2 948 24 0 0 0 chr3 47654754 47654778 -111945005 + AT_rich Low_complexity Low_complexity 1 24 0 2 948 32 57 0 0 chr3 47654863 47654916 -111944867 + AT_rich Low_complexity Low_complexity 1 53 0 2 948 3271 168 22 48 chr3 47654959 47655651 -111944132 - L1_Mur1 LINE L1 -481 5405 4732 2 948 2442 277 69 81 chr3 47655726 47655823 -111943960 - L1Md_F2 LINE L1 -3 6970 6861 2 948 522 0 0 0 chr3 47655823 47655881 -111943902 + (CA)n Simple_repeat Simple_repeat 2 59 0 2 948 37084 61 5 10 chr3 47655881 47662370 -111937413 - L1Md_F2 LINE L1 -113 6860 445 2 948 1568 191 7 0 chr3 47662376 47662649 -111937134 - Lx3B LINE L1 -420 6553 6279 2 948 322 192 0 0 chr3 47662773 47662846 -111936937 - Lx3C LINE L1 -7 6969 6897 2 948 516 16 0 0 chr3 47662850 47662911 -111936872 + (TG)n Simple_repeat Simple_repeat 2 62 0 2 948 5458 171 7 29 chr3 47662911 47663038 -111936745 - L1_Mur1 LINE L1 -604 5282 5159 2 948 400 18 35 0 chr3 47663044 47663101 -111936682 + (TTTTG)n Simple_repeat Simple_repeat 2 60 0 2 948 1123 62 0 0 chr3 47663101 47663238 -111936545 - B1_Mm SINE Alu -9 138 2 2 948 5458 171 7 29 chr3 47663238 47664195 -111935588 - L1_Mur1 LINE L1 -728 5158 4222 2 948 1577 288 12 47 chr3 47665449 47665624 -111934159 - Lx6 LINE L1 -36 7424 7267 2 948 3934 35 31 2 chr3 47665624 47666113 -111933670 + L1Md_F2 LINE L1 6080 6582 0 2 948 1577 288 12 47 chr3 47666113 47666432 -111933351 - Lx6 LINE L1 -194 7266 6947 2 948 2037 230 73 8 chr3 47666444 47666926 -111932857 - RMER5 LTR ERV1 -21 513 1 2 948 21 57 0 0 chr3 47667879 47667914 -111931869 + AT_rich Low_complexity Low_complexity 1 35 0 2 948 673 214 98 5 chr3 47669063 47669256 -111930527 + Lx4B LINE L1 1669 1879 -3998 2 948 1164 68 7 0 chr3 47669256 47669402 -111930381 + B1_Mm SINE Alu 1 147 0 2 948 240 111 0 0 chr3 47669407 47669452 -111930331 + (CAAAAA)n Simple_repeat Simple_repeat 2 46 0 2 948 455 180 0 0 chr3 47669455 47669544 -111930239 + Lx4B LINE L1 1861 1949 -3928 2 948 14411 163 54 11 chr3 47669536 47670149 -111929634 + Lx4B LINE L1 2839 3479 -2398 2 948 315 85 0 0 chr3 47670149 47670196 -111929587 + (CCAA)n Simple_repeat Simple_repeat 1 47 0 2 948 14411 163 54 11 chr3 47670196 47670416 -111929367 + Lx4B LINE L1 3480 3696 -2181 2 948 5453 98 9 8 chr3 47670416 47671197 -111928586 + L1Md_F2 LINE L1 5801 6582 0 2 948 14411 171 46 14 chr3 47671197 47674432 -111925351 + Lx4B LINE L1 3697 7054 -4 2 948 373 268 88 18 chr3 47676057 47676171 -111923612 + RSINE1 SINE B4 43 164 -1 2 948 444 19 0 0 chr3 47676176 47676229 -111923554 + (CTA)n Simple_repeat Simple_repeat 1 53 0 2 948 26922 80 5 1 chr3 47676302 47679990 -111919793 + L1Md_F2 LINE L1 1885 5586 -297 2 948 7797 60 4 2 chr3 47679991 47680984 -111918799 + L1Md_F2 LINE L1 5588 6582 0 2 948 387 260 31 0 chr3 47681040 47681136 -111918647 + ID_B1 SINE B4 2 100 -124 2 948 6540 59 29 0 chr3 47681981 47682810 -111916973 - L1_Mus1 LINE L1 -90 6477 5625 2 948 5349 119 6 2 chr3 47682805 47683598 -111916185 + L1_Mus1 LINE L1 4826 5621 -262 2 948 1316 104 52 5 chr3 47683598 47683811 -111915972 - L1_Mus3 LINE L1 -14 6624 6402 2 948 234 286 0 0 chr3 47684034 47684090 -111915693 + CT-rich Low_complexity Low_complexity 1 56 0 2 948 433 366 28 0 chr3 47684214 47684356 -111915427 - RSINE1 SINE B4 -17 148 3 2 948 473 333 43 65 chr3 47685581 47685812 -111913971 + B4A SINE B4 1 226 -66 2 948 304 269 94 70 chr3 47686230 47686358 -111913425 + RMER15 LTR ERVL 9 139 -436 2 948 485 314 55 98 chr3 47686362 47686669 -111913114 + RMER15 LTR ERVL 265 558 -17 2 948 3295 35 13 0 chr3 47686813 47687210 -111912573 + L1Md_F2 LINE L1 5185 5586 -297 2 948 8001 42 18 1 chr3 47687210 47688186 -111911597 + L1Md_F2 LINE L1 5587 6579 -3 2 948 336 83 0 0 chr3 47688264 47688312 -111911471 + (TG)n Simple_repeat Simple_repeat 1 48 0 2 948 243 103 0 0 chr3 47688414 47688453 -111911330 + (TG)n Simple_repeat Simple_repeat 2 40 0 2 948 313 202 0 19 chr3 47688581 47688687 -111911096 - L1Md_T LINE L1 -2 6580 6477 2 948 26 30 0 0 chr3 47688829 47688862 -111910921 + AT_rich Low_complexity Low_complexity 1 33 0 2 948 243 88 0 0 chr3 47688864 47688898 -111910885 + (TTTG)n Simple_repeat Simple_repeat 3 36 0 2 948 242 125 21 0 chr3 47689308 47689356 -111910427 + (TA)n Simple_repeat Simple_repeat 2 50 0 2 948 218 377 0 0 chr3 47690305 47690374 -111909409 - MIR SINE MIR -185 77 9 2 948 3408 87 25 8 chr3 47691023 47691533 -111908250 - L1Md_F2 LINE L1 0 6582 6064 2 948 395 111 16 0 chr3 47691934 47691997 -111907786 - HAL1-3A_ME LINE L1 -820 2038 1975 2 948 207 266 0 0 chr3 47691997 47692061 -111907722 + (TG)n Simple_repeat Simple_repeat 1 64 0 2 948 998 92 0 7 chr3 47692209 47692362 -111907421 + (GGAA)n Simple_repeat Simple_repeat 1 152 0 2 948 293 186 14 0 chr3 47694193 47694263 -111905520 + (TA)n Simple_repeat Simple_repeat 1 71 0 2 948 401 30 0 56 chr3 47694333 47694404 -111905379 + (TA)n Simple_repeat Simple_repeat 2 68 0 2 948 313 301 155 70 chr3 47695416 47695901 -111903882 - LTR73 LTR ERV1 -17 555 30 2 948 1028 273 23 63 chr3 47696083 47696478 -111903305 + RLTR14 LTR ERV1 3 381 -1 2 948 1515 211 207 5 chr3 47696753 47697192 -111902591 - RLTR11A LTR ERVK 0 528 1 2 948 21 82 0 0 chr3 47698042 47698091 -111901692 + AT_rich Low_complexity Low_complexity 1 49 0 2 948 21 0 0 0 chr3 47698124 47698145 -111901638 + AT_rich Low_complexity Low_complexity 1 21 0 2 948 26 64 0 0 chr3 47699206 47699253 -111900530 + AT_rich Low_complexity Low_complexity 1 47 0 2 948 689 338 146 47 chr3 47699689 47700275 -111899508 - Lx8 LINE L1 -604 7092 6451 2 948 334 342 72 63 chr3 47700289 47700607 -111899176 + Lx8 LINE L1 7136 7456 -17 2 948 23 0 0 0 chr3 47700612 47700635 -111899148 + AT_rich Low_complexity Low_complexity 1 23 0 2 948 1211 229 225 6 chr3 47702216 47702545 -111897238 + MTC LTR MaLR 3 403 -18 2 948 320 266 0 0 chr3 47703134 47703213 -111896570 - Lx9 LINE L1 -351 7293 7215 2 948 882 317 50 44 chr3 47703229 47703728 -111896055 - Lx9 LINE L1 -480 7164 6663 2 948 273 140 0 0 chr3 47703755 47703812 -111895971 + (T)n Simple_repeat Simple_repeat 1 57 0 2 948 593 333 66 19 chr3 47703820 47704077 -111895706 - Lx9 LINE L1 -1014 6630 6362 2 948 225 0 0 0 chr3 47704121 47704146 -111895637 + (TG)n Simple_repeat Simple_repeat 2 26 0 2 948 420 223 0 0 chr3 47704166 47704269 -111895514 + (TA)n Simple_repeat Simple_repeat 2 104 0 2 948 674 43 11 0 chr3 47704432 47704526 -111895257 + (TCTA)n Simple_repeat Simple_repeat 4 98 0 2 948 7208 98 16 14 chr3 47704682 47705983 -111893800 - L1_Mus4 LINE L1 -6 6630 5322 2 948 388 206 0 0 chr3 47706042 47706105 -111893678 - Lx LINE L1 -403 6251 6189 2 948 1948 128 97 6 chr3 47706107 47706467 -111893316 + Lx LINE L1 6255 6647 -7 2 948 23 0 0 0 chr3 47707840 47707863 -111891920 + AT_rich Low_complexity Low_complexity 1 23 0 2 948 2860 125 37 29 chr3 47708235 47708721 -111891062 + Lx LINE L1 6153 6642 -12 2 118 483 18 0 0 chr3 47710177 47710233 -111889550 + (CA)n Simple_repeat Simple_repeat 2 57 0 2 949 411 21 0 0 chr3 47710233 47710281 -111889502 + (GA)n Simple_repeat Simple_repeat 1 48 0 2 949 37 39 0 0 chr3 47710573 47710624 -111889159 + AT_rich Low_complexity Low_complexity 1 51 0 2 949 288 181 0 0 chr3 47710649 47710732 -111889051 + T-rich Low_complexity Low_complexity 1 83 0 2 949 210 71 0 0 chr3 47711584 47711612 -111888171 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 2 949 24359 89 6 3 chr3 47711686 47715085 -111884698 + L1Md_F2 LINE L1 2152 5566 -317 2 949 2608 49 6 44 chr3 47715085 47715425 -111884358 + IAPLTR2b LTR ERVK 1 327 0 2 949 24359 89 6 3 chr3 47715425 47715451 -111884332 + L1Md_F2 LINE L1 5567 5586 -297 2 949 7274 86 0 3 chr3 47715451 47716510 -111883273 + L1Md_F2 LINE L1 5587 6582 0 2 949 1124 266 11 78 chr3 47716513 47716870 -111882913 - RMER1B Other Other -292 774 250 2 949 360 286 55 16 chr3 47716905 47717033 -111882750 + RMER1B Other Other 280 412 -654 2 949 1105 306 7 18 chr3 47717005 47717473 -111882310 + RMER1A Other Other 1 465 -565 2 949 286 411 7 14 chr3 47718405 47718553 -111881230 + ID_B1 SINE B4 78 224 0 2 949 9589 164 16 78 chr3 47718803 47720460 -111879323 - Lx LINE L1 -116 6538 4890 2 949 270 100 160 0 chr3 47720460 47720510 -111879273 - 4.5SRNA scRNA scRNA -28 66 9 2 949 463 257 0 94 chr3 47720494 47720510 -111879273 + ID_B1 SINE B4 81 142 -82 2 949 764 145 0 8 chr3 47720510 47720635 -111879148 + B1_Mus1 SINE Alu 16 139 -9 2 949 463 257 0 94 chr3 47720635 47720653 -111879130 + ID_B1 SINE B4 143 224 0 2 949 9589 164 16 78 chr3 47720653 47721737 -111878046 - Lx LINE L1 -116 4889 3810 2 949 540 304 65 10 chr3 47721770 47722076 -111877707 + L1M4 LINE L1 4755 5077 -1069 2 949 372 185 0 0 chr3 47722335 47722416 -111877367 + T-rich Low_complexity Low_complexity 2 82 0 2 949 1181 55 0 0 chr3 47722417 47722563 -111877220 - B1_Mus2 SINE Alu 0 147 2 2 949 349 360 0 26 chr3 47722901 47723015 -111876768 + B1F2 SINE Alu 13 123 -26 2 949 247 294 16 25 chr3 47724973 47725095 -111874688 + (TG)n Simple_repeat Simple_repeat 1 121 0 2 949 1243 124 0 10 chr3 47725736 47725939 -111873844 - L1Md_F2 LINE L1 -15 6567 6367 2 949 16667 78 106 9 chr3 47725948 47728735 -111871048 - L1Md_F2 LINE L1 -436 6146 3041 2 949 7120 88 0 5 chr3 47728758 47729732 -111870051 + L1Md_F2 LINE L1 5601 6569 -13 3 949 37 0 0 0 chr3 47729732 47729769 -111870014 + AT_rich Low_complexity Low_complexity 1 37 0 3 949 306 0 0 0 chr3 47730848 47730882 -111868901 + (TG)n Simple_repeat Simple_repeat 1 34 0 3 949 516 16 0 0 chr3 47730884 47730945 -111868838 + (GA)n Simple_repeat Simple_repeat 2 62 0 3 949 4116 158 29 1 chr3 47731670 47732405 -111867378 - Lx LINE L1 -6 6648 5894 3 949 251 156 0 0 chr3 47732405 47732450 -111867333 + L1_Mur2 LINE L1 5316 5360 -517 3 949 30469 96 16 2 chr3 47732452 47737652 -111862131 + L1Md_F2 LINE L1 311 5585 -298 3 949 7358 79 6 4 chr3 47737653 47738647 -111861136 + L1Md_F2 LINE L1 5587 6582 0 3 949 1314 129 142 0 chr3 47738664 47738904 -111860879 + L1_Mm LINE L1 5354 5627 -256 3 949 772 299 97 33 chr3 47738905 47739377 -111860406 + RMER12 LTR ERVK 32 540 -1308 3 949 1103 82 51 29 chr3 47739366 47739541 -111860242 - MTB LTR MaLR -221 179 1 3 949 5314 155 66 16 chr3 47739565 47740559 -111859224 - ORR1A2-int LTR MaLR -214 1044 1 3 949 2126 135 3 6 chr3 47740559 47740887 -111858896 - ORR1A2 LTR MaLR 0 327 1 3 949 695 307 31 16 chr3 47740990 47741248 -111858535 + MTE-int LTR MaLR 165 426 -1154 3 949 23 0 0 0 chr3 47742347 47742370 -111857413 + AT_rich Low_complexity Low_complexity 1 23 0 3 949 1542 181 104 15 chr3 47742997 47743323 -111856460 + Lx2B LINE L1 6646 7000 0 3 949 21 0 0 0 chr3 47743361 47743382 -111856401 + AT_rich Low_complexity Low_complexity 1 21 0 3 949 1849 271 8 52 chr3 47743573 47744071 -111855712 + Lx6 LINE L1 6955 7430 -30 3 949 24 0 0 0 chr3 47744071 47744095 -111855688 + AT_rich Low_complexity Low_complexity 1 24 0 3 949 557 296 133 0 chr3 47744109 47744349 -111855434 - L1MA4 LINE L1 -377 5923 5652 3 949 1063 125 16 33 chr3 47744368 47744550 -111855233 - B2_Mm2 SINE B2 -14 181 3 3 949 7028 172 28 14 chr3 47744579 47746184 -111853599 + Lx3C LINE L1 5345 6974 -2 3 949 220 132 55 36 chr3 47746184 47746239 -111853544 + A-rich Low_complexity Low_complexity 1 56 0 3 949 240 307 52 9 chr3 47746419 47746534 -111853249 + Lx9 LINE L1 7322 7441 -203 3 949 198 71 0 0 chr3 47746549 47746577 -111853206 + (TG)n Simple_repeat Simple_repeat 1 28 0 3 949 305 308 33 11 chr3 47746714 47746898 -111852885 + L1P5 LINE L1 5470 5657 -499 3 949 1953 128 20 3 chr3 47747200 47747506 -111852277 - RLTR10E LTR ERVK 0 311 1 3 949 2985 69 3 3 chr3 47747983 47748374 -111851409 + MTB LTR MaLR 1 391 -9 3 949 459 0 0 0 chr3 47748374 47748425 -111851358 + (CA)n Simple_repeat Simple_repeat 2 52 0 3 949 227 103 0 25 chr3 47748427 47748467 -111851316 + (TA)n Simple_repeat Simple_repeat 2 40 0 3 949 420 104 0 0 chr3 47750708 47750775 -111849008 + (GGAA)n Simple_repeat Simple_repeat 2 68 0 3 949 25 0 0 0 chr3 47751267 47751292 -111848491 + AT_rich Low_complexity Low_complexity 1 25 0 3 949 239 308 22 11 chr3 47751632 47751724 -111848059 + MLT1A LTR MaLR 278 370 -4 3 949 324 320 75 37 chr3 47752415 47752629 -111847154 - MLT1D LTR MaLR 0 505 284 3 949 863 323 38 19 chr3 47752986 47753342 -111846441 + ORR1D2 LTR MaLR 3 365 -5 3 949 36 0 0 0 chr3 47753459 47753495 -111846288 + AT_rich Low_complexity Low_complexity 1 36 0 3 949 27 29 0 0 chr3 47754285 47754319 -111845464 + AT_rich Low_complexity Low_complexity 1 34 0 3 949 247 321 71 0 chr3 47754820 47754904 -111844879 + B4A SINE B4 2 91 -201 3 949 486 33 0 0 chr3 47755006 47755066 -111844717 + (CA)n Simple_repeat Simple_repeat 1 60 0 3 949 184 224 0 29 chr3 47755140 47755209 -111844574 + (CATATA)n Simple_repeat Simple_repeat 6 72 0 3 949 396 338 83 31 chr3 47756133 47756423 -111843360 + LTR40b LTR ERVL 156 460 -2 3 949 228 305 119 37 chr3 47758098 47758207 -111841576 - B4 SINE B4 -169 123 6 3 949 566 325 26 5 chr3 47758967 47759162 -111840621 - MTEb LTR MaLR -180 199 1 3 949 198 261 56 42 chr3 47759432 47759504 -111840279 - L4 LINE RTE -376 1653 1581 3 949 439 392 61 9 chr3 47760987 47761216 -111838567 + Tigger5 DNA MER2_type 2 242 -2164 3 949 246 302 52 10 chr3 47761212 47761309 -111838474 + Tigger5 DNA MER2_type 2296 2396 -10 3 949 835 294 36 118 chr3 47762808 47763274 -111836509 + RLTR23 LTR ERV1 3 430 0 3 949 747 0 0 0 chr3 47763519 47763602 -111836181 + (GAAA)n Simple_repeat Simple_repeat 2 84 0 3 949 517 272 83 36 chr3 47763732 47763900 -111835883 - Lx5 LINE L1 0 7050 6875 3 949 351 0 0 0 chr3 47763911 47763950 -111835833 + (T)n Simple_repeat Simple_repeat 1 39 0 3 949 1189 55 0 0 chr3 47763950 47764096 -111835687 - B1_Mm SINE Alu 0 147 2 3 949 230 246 14 14 chr3 47764250 47764271 -111835512 + (TG)n Simple_repeat Simple_repeat 2 22 0 3 949 330 45 0 0 chr3 47764271 47764315 -111835468 + (GA)n Simple_repeat Simple_repeat 1 44 0 3 949 230 246 14 14 chr3 47764315 47764363 -111835420 + (TG)n Simple_repeat Simple_repeat 1 49 0 3 949 374 347 95 81 chr3 47764365 47764650 -111835133 - B4A SINE B4 0 292 4 3 949 35 63 0 0 chr3 47764782 47764845 -111834938 + AT_rich Low_complexity Low_complexity 1 63 0 3 949 2428 214 62 39 chr3 47764850 47765649 -111834134 + Lx3_Mus LINE L1 10 1093 -5891 3 949 10231 117 284 3 chr3 47765634 47769480 -111830303 + Lx3_Mus LINE L1 1976 7005 -4 3 949 6334 59 1 0 chr3 47769649 47770448 -111829335 - L1Md_A LINE L1 0 6582 5783 3 949 12437 36 0 1 chr3 47770448 47772609 -111827174 - L1Md_T LINE L1 -5 6577 4418 3 949 367 263 12 96 chr3 47772584 47772824 -111826959 - Lx7 LINE L1 -7 7689 7470 3 949 22 0 0 0 chr3 47774230 47774252 -111825531 + AT_rich Low_complexity Low_complexity 1 22 0 3 949 1331 97 0 0 chr3 47774285 47774470 -111825313 + L1_Mus2 LINE L1 6353 6537 -29 3 949 4980 67 5 14 chr3 47774472 47775137 -111824646 - L1Md_F2 LINE L1 0 6582 5924 3 949 9631 45 4 1 chr3 47775137 47776414 -111823369 + L1Md_F2 LINE L1 4675 5953 -629 3 949 27 49 0 0 chr3 47776609 47776650 -111823133 + AT_rich Low_complexity Low_complexity 1 41 0 3 949 994 175 92 18 chr3 47777034 47777307 -111822476 + Lx9 LINE L1 7352 7644 0 3 949 216 281 11 109 chr3 47778082 47778174 -111821609 - RSINE1 SINE B4 0 165 83 3 949 886 166 77 6 chr3 47779645 47779815 -111819968 + L1VL1 LINE L1 245 426 -6212 3 949 12129 95 14 0 chr3 47779812 47782251 -111817532 + L1VL1 LINE L1 531 3003 -2880 3 949 751 206 4 171 chr3 47782256 47782413 -111817370 - Lx6 LINE L1 -645 6815 6701 3 949 2496 114 42 2 chr3 47782413 47782818 -111816965 + BGLII LTR ERVK 1 421 0 3 949 751 206 4 171 chr3 47782818 47782918 -111816865 - Lx6 LINE L1 -760 6700 6601 3 949 588 29 0 0 chr3 47782923 47782993 -111816790 + (TG)n Simple_repeat Simple_repeat 2 71 0 3 949 261 0 0 0 chr3 47786159 47786188 -111813595 + (CA)n Simple_repeat Simple_repeat 2 30 0 3 949 189 0 0 0 chr3 47786733 47786754 -111813029 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 3 949 522 0 0 0 chr3 47786762 47786820 -111812963 + (TG)n Simple_repeat Simple_repeat 2 59 0 3 949 341 311 118 7 chr3 47787238 47787390 -111812393 - MLT-int LTR MaLR -20 1715 1547 3 949 280 363 88 104 chr3 47788093 47788474 -111811309 - MLT-int LTR MaLR -1023 712 328 3 949 321 26 0 0 chr3 47788474 47788512 -111811271 + (TTA)n Simple_repeat Simple_repeat 2 39 0 3 949 1666 198 27 15 chr3 47788522 47788855 -111810928 - Lx3B LINE L1 -7 6966 6630 3 949 280 363 88 104 chr3 47788855 47789123 -111810660 - MLT-int LTR MaLR -1408 327 63 3 949 3930 48 2 0 chr3 47789630 47790110 -111809673 + L1Md_T LINE L1 6101 6581 -1 3 949 288 77 0 0 chr3 47790869 47790908 -111808875 + (TA)n Simple_repeat Simple_repeat 2 40 0 3 949 21 36 0 0 chr3 47791048 47791076 -111808707 + AT_rich Low_complexity Low_complexity 1 28 0 3 949 2081 251 32 95 chr3 47791079 47791824 -111807959 - Lx7 LINE L1 -11 7685 6988 3 949 2465 139 35 19 chr3 47791824 47792249 -111807534 - BGLII_B LTR ERVK 0 441 10 3 949 2486 231 32 43 chr3 47792253 47792507 -111807276 - Lx6 LINE L1 -471 6989 6741 3 949 414 0 0 0 chr3 47792507 47792553 -111807230 + (TTTTG)n Simple_repeat Simple_repeat 3 48 0 3 949 2486 231 32 43 chr3 47792553 47792945 -111806838 - Lx6 LINE L1 -720 6740 6350 3 949 29 94 0 0 chr3 47794275 47794360 -111805423 + AT_rich Low_complexity Low_complexity 1 85 0 3 949 1180 253 19 5 chr3 47794794 47795325 -111804458 + Lx5 LINE L1 894 1496 -4381 3 949 1785 101 7 15 chr3 47795330 47795602 -111804181 + L1_Mus3 LINE L1 6344 6613 -25 3 949 1137 123 0 0 chr3 47795606 47795785 -111803998 + (GAA)n Simple_repeat Simple_repeat 1 179 0 3 949 902 210 23 83 chr3 47795787 47795886 -111803897 + Lx5 LINE L1 1494 1592 -4285 3 949 1347 85 17 0 chr3 47795886 47796063 -111803720 + B2_Mm2 SINE B2 3 182 -13 3 949 902 210 23 83 chr3 47796063 47796264 -111803519 + Lx5 LINE L1 1593 1776 -4101 3 949 306 102 61 0 chr3 47796262 47796311 -111803472 - L1_Mur2 LINE L1 -2093 3784 3733 3 949 6444 199 42 7 chr3 47796302 47798363 -111801420 + Lx5 LINE L1 4892 7050 0 3 949 267 321 65 36 chr3 47798875 47799014 -111800769 - B1_Mur1 SINE Alu -1 148 6 3 949 271 344 98 37 chr3 47799378 47799541 -111800242 + B4 SINE B4 48 220 -72 3 949 25 75 0 0 chr3 47799621 47799674 -111800109 + AT_rich Low_complexity Low_complexity 1 53 0 3 949 823 341 60 20 chr3 47799695 47799875 -111799908 + MTEa LTR MaLR 16 207 -172 3 949 1836 133 61 13 chr3 47799875 47800187 -111799596 + ORR1A2 LTR MaLR 1 327 0 3 949 823 341 60 20 chr3 47800187 47800356 -111799427 + MTEa LTR MaLR 208 379 0 3 949 183 80 0 0 chr3 47800599 47800624 -111799159 + (CATA)n Simple_repeat Simple_repeat 4 28 0 3 949 22 0 0 0 chr3 47800748 47800770 -111799013 + AT_rich Low_complexity Low_complexity 1 22 0 3 949 25 51 0 0 chr3 47802596 47802635 -111797148 + AT_rich Low_complexity Low_complexity 1 39 0 3 949 894 185 0 6 chr3 47802635 47802814 -111796969 + L1_Mur1 LINE L1 4209 4386 -1500 3 949 28538 88 4 9 chr3 47802811 47806033 -111793750 + L1Md_F2 LINE L1 1489 4691 -1192 3 949 2499 38 95 0 chr3 47806033 47806349 -111793434 + ORR1A0 LTR MaLR 1 346 0 3 949 28538 88 4 9 chr3 47806349 47807242 -111792541 + L1Md_F2 LINE L1 4692 5585 -298 3 949 7068 82 5 14 chr3 47807243 47808235 -111791548 + L1Md_F2 LINE L1 5587 6569 -13 3 949 37391 21 0 8 chr3 47808244 47813414 -111786369 + L1Md_T LINE L1 462 5586 -297 3 949 8152 43 1 0 chr3 47813414 47814404 -111785379 + L1Md_T LINE L1 5587 6577 -5 3 949 9349 129 15 3 chr3 47814422 47816556 -111783227 + L1_Mus3 LINE L1 4331 6492 -146 3 949 22 70 0 0 chr3 47816556 47816599 -111783184 + AT_rich Low_complexity Low_complexity 1 43 0 3 949 230 264 111 94 chr3 47816754 47816871 -111782912 + MLT1A0 LTR MaLR 3 121 -253 4 949 285 299 82 27 chr3 47816888 47816998 -111782785 + MLT1A0 LTR MaLR 182 297 -68 4 949 456 51 0 0 chr3 47817120 47817179 -111782604 + (TC)n Simple_repeat Simple_repeat 2 60 0 4 949 666 0 0 0 chr3 47817179 47817252 -111782531 + (TG)n Simple_repeat Simple_repeat 1 74 0 4 949 7497 39 4 1 chr3 47817400 47818310 -111781473 + L1Md_F2 LINE L1 5670 6582 0 4 949 311 350 77 4 chr3 47818632 47818893 -111780890 + B4A SINE B4 1 280 -12 4 949 282 73 0 0 chr3 47818893 47818934 -111780849 + (CA)n Simple_repeat Simple_repeat 2 42 0 4 949 219 88 0 0 chr3 47818934 47818968 -111780815 + (GA)n Simple_repeat Simple_repeat 1 34 0 4 949 1091 271 117 47 chr3 47820332 47820890 -111778893 - MER67C LTR ERV1 -6 705 109 4 949 22 0 0 0 chr3 47820920 47820942 -111778841 + AT_rich Low_complexity Low_complexity 1 22 0 4 949 24 53 0 0 chr3 47821480 47821518 -111778265 + AT_rich Low_complexity Low_complexity 1 38 0 4 949 21 0 0 0 chr3 47822195 47822216 -111777567 + AT_rich Low_complexity Low_complexity 1 21 0 4 949 209 266 16 0 chr3 47822334 47822398 -111777385 + (TG)n Simple_repeat Simple_repeat 2 66 0 4 949 206 62 31 0 chr3 47822667 47822699 -111777084 + (TTTTC)n Simple_repeat Simple_repeat 3 35 0 4 949 884 269 13 0 chr3 47823271 47823505 -111776278 + Lx9 LINE L1 7187 7423 -221 4 949 695 211 74 60 chr3 47823502 47823785 -111775998 + Lx9 LINE L1 7356 7642 -2 4 949 24 0 0 0 chr3 47823785 47823809 -111775974 + AT_rich Low_complexity Low_complexity 1 24 0 4 949 351 0 0 0 chr3 47823862 47823901 -111775882 + (TA)n Simple_repeat Simple_repeat 2 40 0 4 949 644 252 47 39 chr3 47824026 47824388 -111775395 + RMER17C LTR ERVK 1 410 0 4 949 536 75 0 60 chr3 47824850 47824950 -111774833 - L1Md_F2 LINE L1 -1 6581 6488 4 949 183 80 0 0 chr3 47825857 47825882 -111773901 + (CCCTAA)n Simple_repeat Simple_repeat 5 29 0 4 949 346 274 125 19 chr3 47826101 47826261 -111773522 + MER58A DNA MER1_type 30 206 -18 4 949 251 220 0 33 chr3 47826301 47826362 -111773421 + CT-rich Low_complexity Low_complexity 2 60 0 4 949 1110 327 96 25 chr3 47826775 47827421 -111772362 + Lx8 LINE L1 6331 7022 -451 4 949 667 332 19 0 chr3 47827455 47827660 -111772123 - B3 SINE B2 -2 214 6 4 949 355 229 0 0 chr3 47827729 47827799 -111771984 + RMER1B Other Other 598 667 -399 4 949 1817 78 27 0 chr3 47827799 47828055 -111771728 + MTB LTR MaLR 1 263 -137 4 949 4693 59 2 5 chr3 47828149 47828748 -111771035 - L1Md_F2 LINE L1 0 6582 5986 4 949 3096 22 0 0 chr3 47828748 47829104 -111770679 + L1Md_F2 LINE L1 5600 5955 -627 4 949 1066 73 20 7 chr3 47829104 47829255 -111770528 + MTB LTR MaLR 248 400 0 4 949 905 208 142 0 chr3 47829255 47829481 -111770302 + RMER1B Other Other 663 920 -146 4 949 28079 72 2 3 chr3 47830778 47835786 -111763997 + L1Md_F2 LINE L1 492 5589 -297 4 949 7748 56 8 1 chr3 47835786 47836775 -111763008 + L1Md_F2 LINE L1 5590 6585 0 4 949 1488 221 78 9 chr3 47836933 47837267 -111762516 - ORR1B2 LTR MaLR -8 359 3 4 949 782 323 78 28 chr3 47838073 47838393 -111761390 + MTD LTR MaLR 60 398 -23 4 949 6610 209 20 35 chr3 47838551 47840272 -111759511 + Lx6 LINE L1 4382 6077 -1383 4 949 3706 48 35 0 chr3 47840281 47840739 -111759044 + MT2C_Mm LTR ERVL 2 475 0 4 949 339 44 0 0 chr3 47840822 47840867 -111758916 + (TC)n Simple_repeat Simple_repeat 2 46 0 4 949 441 0 0 0 chr3 47840867 47840915 -111758868 + (TG)n Simple_repeat Simple_repeat 2 50 0 4 949 390 265 71 0 chr3 47840964 47841062 -111758721 + B3 SINE B2 3 107 -109 4 118 1388 28 73 0 chr3 47841121 47841300 -111758483 + MTA_Mm LTR MaLR 205 396 0 4 950 2273 282 25 14 chr3 47841303 47841951 -111757832 + Lx6 LINE L1 6075 6729 -731 4 950 2400 259 50 18 chr3 47842052 47842198 -111757585 + Lx6 LINE L1 6741 6882 -578 4 950 312 27 0 0 chr3 47842198 47842235 -111757548 + (GA)n Simple_repeat Simple_repeat 2 38 0 4 950 2400 259 50 18 chr3 47842235 47842702 -111757081 + Lx6 LINE L1 6883 7373 -87 4 950 5820 112 11 15 chr3 47842702 47843658 -111756125 - MusHAL1 LINE L1 -1538 1174 223 4 950 1110 107 0 6 chr3 47843660 47843820 -111755963 + L1_Mm LINE L1 5405 5563 -320 4 950 929 149 16 6 chr3 47843820 47844002 -111755781 + Lx2 LINE L1 6802 6985 -12 4 950 22 35 0 0 chr3 47844116 47844145 -111755638 + AT_rich Low_complexity Low_complexity 1 29 0 4 950 26 0 0 0 chr3 47844199 47844225 -111755558 + AT_rich Low_complexity Low_complexity 1 26 0 4 950 24 32 0 0 chr3 47844812 47844843 -111754940 + AT_rich Low_complexity Low_complexity 1 31 0 4 950 41 66 0 0 chr3 47844935 47845011 -111754772 + AT_rich Low_complexity Low_complexity 1 76 0 4 950 246 304 14 0 chr3 47845195 47845264 -111754519 - Lx8 LINE L1 -231 7242 7173 4 950 201 132 0 0 chr3 47845291 47845329 -111754454 + (TTGG)n Simple_repeat Simple_repeat 4 41 0 4 950 293 338 75 78 chr3 47845851 47846172 -111753611 + L2 LINE L2 2331 2650 -769 4 950 247 340 0 9 chr3 47846630 47846737 -111753046 + (CA)n Simple_repeat Simple_repeat 1 106 0 4 950 972 199 98 43 chr3 47847722 47848027 -111751756 - Lx9 LINE L1 -8 7636 7315 4 950 262 364 75 41 chr3 47848465 47848611 -111751172 + B3 SINE B2 9 159 -57 4 950 225 195 0 0 chr3 47848829 47848870 -111750913 - L1M3 LINE L1 -3772 2368 2328 4 950 459 0 0 0 chr3 47848936 47848987 -111750796 + (CA)n Simple_repeat Simple_repeat 2 52 0 4 950 1011 81 0 0 chr3 47848987 47849146 -111750637 + (TAGA)n Simple_repeat Simple_repeat 2 161 0 4 950 390 21 0 0 chr3 47849151 47849198 -111750585 + (TG)n Simple_repeat Simple_repeat 2 48 0 4 950 228 111 0 0 chr3 47849457 47849493 -111750290 + (TA)n Simple_repeat Simple_repeat 1 36 0 4 950 441 0 0 0 chr3 47849518 47849567 -111750216 + (TTTA)n Simple_repeat Simple_repeat 1 49 0 4 950 1284 68 0 0 chr3 47850148 47850384 -111749399 + (GAA)n Simple_repeat Simple_repeat 1 236 0 4 950 1218 218 25 0 chr3 47851392 47851672 -111748111 + L1_Mur2 LINE L1 3749 4035 -1842 4 950 1563 325 62 79 chr3 47851669 47852840 -111746943 + Lx5 LINE L1 5864 7014 -36 4 950 2918 139 82 20 chr3 47853396 47853933 -111745850 - Lx LINE L1 -3 6651 6082 4 950 4456 134 12 0 chr3 47853933 47854913 -111744870 + Lx LINE L1 5077 6068 -586 4 950 594 100 0 0 chr3 47855456 47855566 -111744217 + Lx LINE L1 6473 6582 0 4 950 772 199 0 7 chr3 47855628 47855765 -111744018 + B1_Mur3 SINE Alu 1 136 -13 4 950 465 19 0 0 chr3 47855765 47855819 -111743964 + (CAAAA)n Simple_repeat Simple_repeat 2 55 0 4 950 1460 216 96 6 chr3 47855876 47856230 -111743553 + MTD LTR MaLR 1 386 -33 4 950 1032 333 58 29 chr3 47857037 47857559 -111742224 - Lx8 LINE L1 -556 6917 6381 4 950 285 39 20 0 chr3 47857573 47857624 -111742159 + L1_Mus4 LINE L1 6579 6630 -6 4 950 3039 209 92 11 chr3 47857835 47858551 -111741232 - Lx5 LINE L1 -2 7048 6275 4 950 526 309 18 18 chr3 47858540 47858708 -111741075 - Lx8 LINE L1 -1080 6393 6226 4 950 390 216 25 32 chr3 47858770 47858928 -111740855 + (TA)n Simple_repeat Simple_repeat 1 157 0 4 950 365 330 71 80 chr3 47859068 47859420 -111740363 + Lx8 LINE L1 6912 7260 -213 4 950 228 219 0 0 chr3 47859448 47859489 -111740294 + (TG)n Simple_repeat Simple_repeat 2 42 0 4 950 217 294 20 0 chr3 47860205 47860256 -111739527 + B3 SINE B2 79 130 -86 4 950 23 0 0 0 chr3 47860419 47860442 -111739341 + AT_rich Low_complexity Low_complexity 1 23 0 4 950 3223 130 29 29 chr3 47860680 47861226 -111738557 + Lx2B LINE L1 6378 6923 -77 4 950 1282 158 191 68 chr3 47861806 47862099 -111737684 - ORR1A4 LTR MaLR 0 329 1 4 950 321 238 0 0 chr3 47863655 47863735 -111736048 + (TA)n Simple_repeat Simple_repeat 2 81 0 4 950 418 327 17 17 chr3 47864304 47864419 -111735364 + RSINE1 SINE B4 4 118 -47 4 950 186 43 0 0 chr3 47864457 47864480 -111735303 + (CA)n Simple_repeat Simple_repeat 1 23 0 4 950 247 352 24 39 chr3 47864528 47864655 -111735128 + PB1 SINE Alu 1 125 -2 4 950 24 32 0 0 chr3 47867032 47867063 -111732720 + AT_rich Low_complexity Low_complexity 1 31 0 4 950 353 67 0 32 chr3 47868035 47868097 -111731686 + (CAAAAA)n Simple_repeat Simple_repeat 1 60 0 4 950 3165 196 181 54 chr3 47868132 47869032 -111730751 - RLTR25B LTR ERVK -7 1021 8 4 950 449 308 54 20 chr3 47869143 47869292 -111730491 - RSINE1 SINE B4 0 165 12 4 950 263 315 120 14 chr3 47870226 47870442 -111729341 + L1MCb LINE L1 903 1141 -4904 4 950 510 61 0 0 chr3 47870442 47870508 -111729275 + (TA)n Simple_repeat Simple_repeat 2 67 0 4 950 1557 108 0 13 chr3 47873200 47873435 -111726348 + Lx2 LINE L1 6412 6643 -354 4 950 1032 166 73 5 chr3 47873435 47873641 -111726142 + Lx2 LINE L1 6775 6994 -3 4 950 59 102 0 0 chr3 47874151 47874357 -111725426 + AT_rich Low_complexity Low_complexity 1 206 0 4 950 331 378 0 0 chr3 47874364 47874475 -111725308 + RSINE1 SINE B4 3 113 -52 4 950 23 54 0 0 chr3 47874530 47874567 -111725216 + AT_rich Low_complexity Low_complexity 1 37 0 4 950 30 27 0 0 chr3 47874856 47874893 -111724890 + AT_rich Low_complexity Low_complexity 1 37 0 4 950 226 303 114 8 chr3 47875810 47875933 -111723850 - Lx8 LINE L1 -202 7271 7136 4 950 777 31 0 0 chr3 47876073 47876169 -111723614 + (TC)n Simple_repeat Simple_repeat 1 96 0 4 950 206 136 23 0 chr3 47876169 47876213 -111723570 + (CA)n Simple_repeat Simple_repeat 2 46 0 4 950 23 33 0 0 chr3 47876610 47876640 -111723143 + AT_rich Low_complexity Low_complexity 1 30 0 4 950 22 0 0 0 chr3 47877741 47877763 -111722020 + AT_rich Low_complexity Low_complexity 1 22 0 4 950 40 49 0 0 chr3 47877846 47877907 -111721876 + AT_rich Low_complexity Low_complexity 1 61 0 4 950 203 213 13 0 chr3 47878021 47878096 -111721687 + GA-rich Low_complexity Low_complexity 4 79 0 4 950 639 182 66 29 chr3 47878222 47878358 -111721425 + B1_Mus2 SINE Alu 1 141 -6 4 950 219 36 0 0 chr3 47878363 47878391 -111721392 + (A)n Simple_repeat Simple_repeat 1 28 0 4 950 24 32 0 0 chr3 47879706 47879737 -111720046 + AT_rich Low_complexity Low_complexity 1 31 0 4 950 800 316 87 49 chr3 47881584 47881930 -111717853 - ORR1D2 LTR MaLR -5 365 7 4 950 726 44 0 0 chr3 47883535 47883625 -111716158 + (GA)n Simple_repeat Simple_repeat 1 90 0 4 950 623 281 32 73 chr3 47886584 47886830 -111712953 + MLT1B LTR MaLR 10 245 -145 5 950 308 285 34 74 chr3 47886871 47887019 -111712764 + MTE2a LTR MaLR 238 379 0 5 950 591 310 48 10 chr3 47887750 47888043 -111711740 - L1MC1 LINE L1 -176 6157 5854 5 950 8933 91 59 14 chr3 47888766 47890098 -111709685 + Lx3_Mus LINE L1 5617 7009 0 5 950 181 57 57 0 chr3 47890129 47890164 -111709619 + (CAA)n Simple_repeat Simple_repeat 3 39 0 5 950 366 42 0 0 chr3 47890746 47890794 -111708989 + (CA)n Simple_repeat Simple_repeat 2 49 0 5 950 230 95 24 0 chr3 47891550 47891592 -111708191 + (GGAA)n Simple_repeat Simple_repeat 2 44 0 5 950 467 314 23 6 chr3 47891607 47891780 -111708003 + GA-rich Low_complexity Low_complexity 4 179 0 5 950 4923 86 7 0 chr3 47891780 47892453 -111707330 + L1_Mus1 LINE L1 5886 6563 -4 5 950 2237 261 71 36 chr3 47892925 47893671 -111706112 - RLTR40 LTR ERVK -45 772 1 5 950 4114 223 32 2 chr3 47893849 47894664 -111705119 + Lx5 LINE L1 6201 7039 -11 5 950 773 297 81 32 chr3 47894969 47895279 -111704504 + MTD LTR MaLR 1 325 -94 5 950 1120 76 0 0 chr3 47895702 47895847 -111703936 + B1_Mus2 SINE Alu 2 146 -1 5 950 207 152 0 0 chr3 47895847 47895893 -111703890 + (CAAA)n Simple_repeat Simple_repeat 1 46 0 5 950 27 0 0 0 chr3 47896048 47896075 -111703708 + AT_rich Low_complexity Low_complexity 1 27 0 5 950 181 190 29 100 chr3 47896148 47896218 -111703565 + L4 LINE RTE 188 252 -1777 5 950 243 0 0 0 chr3 47896257 47896284 -111703499 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 5 950 29015 143 9 34 chr3 47896866 47903399 -111696384 - L1_Mus2 LINE L1 0 6566 218 5 950 2364 157 18 9 chr3 47904961 47905399 -111694384 + Lx2 LINE L1 5956 6397 -600 5 950 2435 61 3 19 chr3 47905375 47905694 -111694089 - L1Md_F2 LINE L1 -440 6142 5829 5 950 3271 70 4 20 chr3 47905695 47906145 -111693638 + L1Md_F2 LINE L1 6122 6564 -18 5 950 189 0 0 0 chr3 47906145 47906166 -111693617 + (TAA)n Simple_repeat Simple_repeat 2 22 0 5 950 1958 115 0 0 chr3 47906170 47906449 -111693334 + Lx2 LINE L1 6370 6648 -349 5 950 1035 144 112 0 chr3 47906444 47906632 -111693151 + Lx2 LINE L1 6775 6983 -14 5 950 441 333 146 29 chr3 47906656 47907033 -111692750 - Lx8 LINE L1 -942 6531 6111 5 950 243 300 24 24 chr3 47907542 47907624 -111692159 - L1ME3A LINE L1 -63 6110 6029 5 950 582 15 0 0 chr3 47907927 47907994 -111691789 + (TA)n Simple_repeat Simple_repeat 2 68 0 5 950 336 366 67 46 chr3 47908372 47908567 -111691216 - L1MEd LINE L1 -5644 475 277 5 950 591 112 0 0 chr3 47909518 47909607 -111690176 + (TAAA)n Simple_repeat Simple_repeat 3 91 0 5 950 6913 106 16 10 chr3 47909919 47911060 -111688723 - L1_Mus3 LINE L1 -17 6621 5471 5 950 2141 175 13 3 chr3 47911058 47911447 -111688336 + L1_Mm LINE L1 5107 5499 -384 5 950 995 0 9 0 chr3 47912389 47912504 -111687279 + (TCTA)n Simple_repeat Simple_repeat 4 119 0 5 950 1159 219 65 32 chr3 47913651 47914023 -111685760 + Lx9 LINE L1 7239 7622 -22 5 950 207 204 0 0 chr3 47914700 47914744 -111685039 + (CATA)n Simple_repeat Simple_repeat 1 44 0 5 950 920 9 0 9 chr3 47915405 47915515 -111684268 + (GAAA)n Simple_repeat Simple_repeat 3 111 0 5 950 459 0 0 0 chr3 47916022 47916073 -111683710 + (TGG)n Simple_repeat Simple_repeat 1 51 0 5 950 387 0 0 0 chr3 47916074 47916117 -111683666 + (TG)n Simple_repeat Simple_repeat 1 43 0 5 950 5621 242 47 20 chr3 47916130 47917843 -111681940 + Lx6 LINE L1 5457 7317 -143 5 950 215 61 30 0 chr3 47917843 47917876 -111681907 + (TTTG)n Simple_repeat Simple_repeat 1 34 0 5 950 1013 280 47 34 chr3 47917876 47917989 -111681794 + Lx6 LINE L1 7318 7431 -29 5 950 24 0 0 0 chr3 47919693 47919717 -111680066 + AT_rich Low_complexity Low_complexity 1 24 0 5 950 437 76 15 0 chr3 47920047 47920113 -111679670 + (TA)n Simple_repeat Simple_repeat 1 67 0 5 950 1115 97 102 0 chr3 47920113 47920299 -111679484 - Lx2 LINE L1 -18 6979 6775 5 950 2001 120 55 3 chr3 47920299 47920609 -111679174 - Lx2 LINE L1 -354 6643 6318 5 950 22 0 0 0 chr3 47920724 47920746 -111679037 + AT_rich Low_complexity Low_complexity 1 22 0 5 950 1512 239 85 29 chr3 47921619 47922242 -111677541 - RMER17B LTR ERVK -63 845 1 5 950 590 0 14 0 chr3 47922482 47922552 -111677231 + (TCTA)n Simple_repeat Simple_repeat 2 72 0 5 950 297 293 0 0 chr3 47922588 47922663 -111677120 + Lx7 LINE L1 7165 7239 -457 5 950 180 0 0 0 chr3 47923764 47923784 -111675999 + (CTTG)n Simple_repeat Simple_repeat 2 21 0 5 950 21 57 0 0 chr3 47923850 47923885 -111675898 + AT_rich Low_complexity Low_complexity 1 35 0 5 950 1117 82 0 0 chr3 47924271 47924418 -111675365 - B1_Mm SINE Alu 0 147 1 5 950 1397 61 6 11 chr3 47924418 47924599 -111675184 - B2_Mm1t SINE B2 -12 181 1 5 950 405 155 0 14 chr3 47924859 47924931 -111674852 - ORR1C1 LTR MaLR 0 378 308 5 950 574 273 8 8 chr3 47924935 47925068 -111674715 + RMER6D LTR ERVK 575 707 -13 5 950 332 181 19 0 chr3 47925188 47925263 -111674520 - ORR1C1 LTR MaLR -58 320 230 5 950 324 48 0 0 chr3 47925340 47925382 -111674401 + (TG)n Simple_repeat Simple_repeat 1 42 0 5 950 28 0 0 0 chr3 47925412 47925440 -111674343 + AT_rich Low_complexity Low_complexity 1 28 0 5 950 725 322 97 21 chr3 47925458 47925883 -111673900 + Lx7 LINE L1 6629 7085 -611 5 950 209 296 0 43 chr3 47926024 47926116 -111673667 + (CAGAGA)n Simple_repeat Simple_repeat 2 89 0 5 950 510 149 0 0 chr3 47926227 47926314 -111673469 + (TA)n Simple_repeat Simple_repeat 1 87 0 5 950 267 154 75 19 chr3 47926455 47926508 -111673275 - RLTR12B LTR ERVK -42 486 431 5 950 376 314 56 15 chr3 47926611 47926808 -111672975 + MTEb LTR MaLR 167 371 -8 5 950 396 0 0 0 chr3 47926974 47927018 -111672765 + (TA)n Simple_repeat Simple_repeat 2 45 0 5 950 3093 58 182 2 chr3 47927145 47927579 -111672204 + RLTR1B LTR ERV1 1 512 0 5 950 2155 144 76 44 chr3 47928132 47928539 -111671244 - RLTR9B2 LTR ERVK 0 420 1 5 950 423 56 0 0 chr3 47929162 47929216 -111670567 + (CA)n Simple_repeat Simple_repeat 1 54 0 5 950 484 306 49 148 chr3 47929313 47929854 -111669929 - RLTR12B LTR ERVK -20 548 42 5 950 202 158 0 26 chr3 47930497 47930536 -111669247 + (TTTA)n Simple_repeat Simple_repeat 4 41 0 5 950 648 211 68 0 chr3 47930536 47930669 -111669114 - B1_Mus2 SINE Alu 0 147 6 5 950 421 277 30 0 chr3 47931356 47931457 -111668326 + RSINE1 SINE B4 14 117 -48 5 950 3097 51 13 0 chr3 47931500 47931894 -111667889 - L1Md_F3 LINE L1 -9 6575 6177 5 950 931 126 6 6 chr3 47931900 47932060 -111667723 + (GGAGA)n Simple_repeat Simple_repeat 4 163 0 5 950 269 151 0 19 chr3 47932060 47932108 -111667675 + GA-rich Low_complexity Low_complexity 8 55 0 5 950 4068 71 2 8 chr3 47933345 47933881 -111665902 + L1_Mus1 LINE L1 6035 6567 0 5 950 621 329 33 19 chr3 47934903 47935114 -111664669 - MTE2b LTR MaLR -164 215 2 5 950 26 0 0 0 chr3 47935780 47935806 -111663977 + AT_rich Low_complexity Low_complexity 1 26 0 5 950 23 0 0 0 chr3 47936158 47936181 -111663602 + AT_rich Low_complexity Low_complexity 1 23 0 5 950 284 102 20 0 chr3 47936561 47936610 -111663173 + (TATAA)n Simple_repeat Simple_repeat 5 54 0 5 950 310 360 22 7 chr3 47936692 47936829 -111662954 - B3A SINE B2 -51 147 9 5 950 25 75 0 0 chr3 47937322 47937375 -111662408 + AT_rich Low_complexity Low_complexity 1 53 0 5 950 288 344 52 13 chr3 47938049 47938202 -111661581 + L3 LINE CR1 4329 4487 -2 5 950 230 310 89 65 chr3 47938324 47938493 -111661290 - MER58B DNA MER1_type -11 330 158 5 950 29 28 0 0 chr3 47938633 47938669 -111661114 + AT_rich Low_complexity Low_complexity 1 36 0 5 950 292 333 11 0 chr3 47939503 47939596 -111660187 - MTEa LTR MaLR 0 379 286 5 950 329 75 19 0 chr3 47939623 47939676 -111660107 + (TTTTG)n Simple_repeat Simple_repeat 2 55 0 5 950 1130 170 16 0 chr3 47939780 47939968 -111659815 + Lx4A LINE L1 6714 6904 -154 5 950 225 293 206 7 chr3 47939978 47940119 -111659664 - MTEa LTR MaLR -132 247 79 5 950 184 30 61 0 chr3 47940236 47940269 -111659514 + (TTG)n Simple_repeat Simple_repeat 2 36 0 5 950 207 0 0 0 chr3 47940269 47940292 -111659491 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 5 950 183 277 0 0 chr3 47940383 47940430 -111659353 + L2a LINE L2 3373 3419 -7 5 950 22 35 0 0 chr3 47941556 47941585 -111658198 + AT_rich Low_complexity Low_complexity 1 29 0 5 950 381 229 120 98 chr3 47942060 47942244 -111657539 - B3A SINE B2 -2 196 9 5 950 411 21 0 0 chr3 47942961 47943009 -111656774 + (TA)n Simple_repeat Simple_repeat 1 48 0 5 950 245 336 20 54 chr3 47943806 47943954 -111655829 + B4 SINE B4 1 143 -149 5 950 267 203 0 0 chr3 47944110 47944184 -111655599 + CT-rich Low_complexity Low_complexity 2 75 0 5 950 7478 103 8 0 chr3 47944247 47945452 -111654331 + L1_Mus3 LINE L1 5425 6638 0 5 950 191 225 0 24 chr3 47945684 47945766 -111654017 + (TATG)n Simple_repeat Simple_repeat 4 83 0 5 950 388 378 13 53 chr3 47945778 47946080 -111653703 - B4A SINE B4 0 292 3 5 950 1913 221 49 7 chr3 47947416 47947517 -111652266 - RMER1B Other Other -4 1062 950 5 950 375 23 0 0 chr3 47947517 47947561 -111652222 + (CA)n Simple_repeat Simple_repeat 2 45 0 5 950 1913 221 49 7 chr3 47947561 47947888 -111651895 - RMER1B Other Other -117 949 616 5 950 3193 135 129 12 chr3 47947922 47948257 -111651526 - RMER17A LTR ERVK -16 735 370 5 950 896 64 28 28 chr3 47948257 47948433 -111651350 + (GGAGA)n Simple_repeat Simple_repeat 2 177 0 5 950 3193 135 129 12 chr3 47948433 47948755 -111651028 - RMER17A LTR ERVK -382 369 1 5 950 963 303 75 7 chr3 47948755 47949199 -111650584 - RMER1A Other Other -463 567 224 5 950 289 184 197 0 chr3 47949204 47949280 -111650503 - RMER1B Other Other -583 483 393 5 950 903 340 68 93 chr3 47949336 47949851 -111649932 - RMER1B Other Other -564 502 1 5 950 207 162 0 0 chr3 47950539 47950576 -111649207 + (TTG)n Simple_repeat Simple_repeat 2 38 0 5 950 615 14 0 0 chr3 47952295 47952367 -111647416 + (TCTA)n Simple_repeat Simple_repeat 4 75 0 5 950 536 200 0 8 chr3 47953554 47953685 -111646098 + (CATA)n Simple_repeat Simple_repeat 2 131 0 5 950 641 300 53 116 chr3 47954023 47954472 -111645311 + RLTR23 LTR ERV1 10 430 0 6 950 300 27 0 0 chr3 47954953 47954990 -111644793 + (TG)n Simple_repeat Simple_repeat 2 38 0 6 950 1319 96 0 11 chr3 47955188 47955377 -111644406 + B2_Mm2 SINE B2 2 188 -7 6 950 2126 92 14 0 chr3 47955386 47955681 -111644102 + L1_Mus2 LINE L1 6267 6565 -1 6 950 1046 239 23 60 chr3 47955838 47956173 -111643610 + RLTR15 LTR ERVK 8 330 -29 6 950 1190 50 5 38 chr3 47956173 47956359 -111643424 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 6 950 1046 239 23 60 chr3 47956359 47956370 -111643413 + RLTR15 LTR ERVK 331 341 -18 6 950 713 114 9 0 chr3 47956702 47956816 -111642967 + (TCTA)n Simple_repeat Simple_repeat 4 118 0 6 950 817 285 38 14 chr3 47957648 47957858 -111641925 + Lx5 LINE L1 6820 7034 -16 6 950 29 28 0 0 chr3 47957862 47957898 -111641885 + AT_rich Low_complexity Low_complexity 1 36 0 6 950 411 381 39 6 chr3 47959064 47959220 -111640563 + B4A SINE B4 1 161 -131 6 950 15930 25 1 3 chr3 47959231 47961796 -111637987 - L1Md_A LINE L1 0 6582 4024 6 950 267 375 8 84 chr3 47961796 47961927 -111637856 + B4A SINE B4 154 274 -18 6 950 434 357 0 0 chr3 47962549 47962689 -111637094 - Lx8 LINE L1 -170 7303 7164 6 950 250 343 99 15 chr3 47963374 47963575 -111636208 + Tigger15a DNA TcMar 490 707 -8 6 950 496 306 12 48 chr3 47963891 47964056 -111635727 + RSINE1 SINE B4 7 165 0 6 950 3663 129 9 3 chr3 47964200 47964767 -111635016 + L1_Mus4 LINE L1 6065 6634 -2 6 950 524 287 87 6 chr3 47966424 47966596 -111633187 - B3 SINE B2 -4 212 27 6 950 610 145 15 15 chr3 47966596 47966729 -111633054 + (TATATG)n Simple_repeat Simple_repeat 4 136 0 6 950 6806 117 30 14 chr3 47967006 47968148 -111631635 - Lx LINE L1 -13 6641 5490 6 950 492 18 0 0 chr3 47968665 47968722 -111631061 + (TG)n Simple_repeat Simple_repeat 1 57 0 6 950 183 80 0 0 chr3 47968747 47968772 -111631011 + (TA)n Simple_repeat Simple_repeat 2 26 0 6 950 241 237 17 0 chr3 47969118 47969177 -111630606 + (CA)n Simple_repeat Simple_repeat 1 60 0 6 950 384 22 0 0 chr3 47969347 47969392 -111630391 + (CA)n Simple_repeat Simple_repeat 2 46 0 6 118 41103 6 0 0 chr3 47970512 47976857 -111622926 - L1Md_A LINE L1 0 6582 237 6 951 363 78 0 0 chr3 47977479 47977530 -111622253 + (CA)n Simple_repeat Simple_repeat 2 52 0 6 951 2804 213 100 83 chr3 47977692 47978579 -111621204 + RMER19B LTR ERVK 1 902 0 6 951 394 96 0 0 chr3 47978711 47978763 -111621020 + (TTC)n Simple_repeat Simple_repeat 3 54 0 6 951 1018 133 0 11 chr3 47978763 47978795 -111620988 + (TCC)n Simple_repeat Simple_repeat 2 33 0 6 951 1452 44 0 0 chr3 47978795 47978975 -111620808 + (TTCTCC)n Simple_repeat Simple_repeat 1 180 0 6 951 1018 133 0 11 chr3 47978975 47979124 -111620659 + (TCC)n Simple_repeat Simple_repeat 2 148 0 6 951 1242 100 0 0 chr3 47979129 47979309 -111620474 + (TTC)n Simple_repeat Simple_repeat 1 180 0 6 951 198 156 0 0 chr3 47979323 47979368 -111620415 + (TCTCTG)n Simple_repeat Simple_repeat 4 48 0 6 951 315 319 121 29 chr3 47979379 47979686 -111620097 - L1_Mur3 LINE L1 -4003 1877 1543 6 951 189 121 0 0 chr3 47979732 47979765 -111620018 + (TTTTTA)n Simple_repeat Simple_repeat 2 34 0 6 951 1149 105 134 16 chr3 47979768 47979962 -111619821 - L1Md_F2 LINE L1 0 6582 6366 6 951 645 160 32 0 chr3 47979965 47980090 -111619693 - URR1B DNA MER1_type 0 225 97 6 951 2010 168 3 6 chr3 47980103 47980426 -111619357 - RMER13B LTR ERVK -586 322 1 6 951 488 256 81 113 chr3 47980621 47980868 -111618915 - Lx7 LINE L1 -4 7692 7454 6 951 1610 237 106 27 chr3 47980896 47981347 -111618436 - RLTR19 LTR ERVK 0 499 13 6 951 1528 196 6 31 chr3 47981345 47981667 -111618116 - RLTR11A2 LTR ERVK -97 430 117 6 951 547 190 16 65 chr3 47981689 47981813 -111617970 - RLTR11A2 LTR ERVK -409 118 1 6 951 371 186 10 0 chr3 47981935 47982032 -111617751 + (TG)n Simple_repeat Simple_repeat 2 99 0 6 951 1050 47 0 0 chr3 47983022 47983149 -111616634 + L1_Mm LINE L1 5460 5586 -297 6 951 9003 3 0 0 chr3 47983149 47984145 -111615638 + L1Md_A LINE L1 5587 6582 0 6 951 2909 207 52 19 chr3 47984724 47985066 -111614717 + RMER6D LTR ERVK 1 369 -351 6 951 1212 73 0 0 chr3 47985066 47985230 -111614553 + (TC)n Simple_repeat Simple_repeat 2 165 0 6 951 180 0 0 0 chr3 47985230 47985249 -111614534 + (TG)n Simple_repeat Simple_repeat 1 20 0 6 951 2909 207 52 19 chr3 47985249 47985598 -111614185 + RMER6D LTR ERVK 370 714 -6 6 951 286 331 128 33 chr3 47986392 47986698 -111613085 - MLT1-int LTR MaLR -1033 338 4 6 951 24 53 0 0 chr3 47986736 47986774 -111613009 + AT_rich Low_complexity Low_complexity 1 38 0 6 951 10484 147 14 67 chr3 47987148 47989284 -111610499 - L1_Mur1 LINE L1 -1438 4448 2427 6 951 232 200 0 0 chr3 47989285 47989325 -111610458 + Lx3C LINE L1 6931 6970 -6 6 951 27 0 0 0 chr3 47989326 47989353 -111610430 + AT_rich Low_complexity Low_complexity 1 27 0 6 951 353 352 68 34 chr3 47989690 47989854 -111609929 + B3 SINE B2 2 161 -55 6 951 540 0 0 0 chr3 47989854 47989914 -111609869 + (CA)n Simple_repeat Simple_repeat 1 60 0 6 951 353 352 68 34 chr3 47989914 47989955 -111609828 + B3 SINE B2 162 213 -3 6 951 666 270 58 0 chr3 47989990 47990179 -111609604 - Lx5 LINE L1 -2 7048 6849 6 951 256 191 0 0 chr3 47990214 47990261 -111609522 + Lx5 LINE L1 6377 6423 -627 6 951 586 359 10 0 chr3 47990469 47990661 -111609122 + ID_B1 SINE B4 2 195 -29 6 951 351 0 0 0 chr3 47990990 47991029 -111608754 + (T)n Simple_repeat Simple_repeat 1 39 0 6 951 980 215 154 126 chr3 47991898 47992280 -111607503 - RMER6C LTR ERVK -2 688 307 6 951 1139 61 7 7 chr3 47992280 47992428 -111607355 - B1_Mus1 SINE Alu 0 148 1 6 951 980 215 154 126 chr3 47992428 47992714 -111607069 - RMER6C LTR ERVK -384 306 1 6 951 24 0 0 0 chr3 47992788 47992812 -111606971 + AT_rich Low_complexity Low_complexity 1 24 0 6 951 23 54 0 0 chr3 47992976 47993013 -111606770 + AT_rich Low_complexity Low_complexity 1 37 0 6 951 252 368 0 28 chr3 47993033 47993142 -111606641 - PB1D10 SINE Alu -1 116 11 6 951 773 207 107 7 chr3 47994099 47994279 -111605504 + Lx3C LINE L1 6383 6530 -446 6 951 8157 42 1 1 chr3 47994288 47995500 -111604283 - L1Md_F2 LINE L1 -3 6579 5367 6 951 2409 144 29 49 chr3 47995500 47995945 -111603838 + Lx3C LINE L1 6541 6976 0 6 951 223 267 18 35 chr3 47996651 47996822 -111602961 + (TA)n Simple_repeat Simple_repeat 2 169 0 6 951 209 100 58 39 chr3 47997064 47997116 -111602667 + (TTAAA)n Simple_repeat Simple_repeat 5 57 0 6 951 34 24 0 0 chr3 47997418 47997459 -111602324 + AT_rich Low_complexity Low_complexity 1 41 0 6 951 417 20 0 0 chr3 47997470 47997520 -111602263 + (TG)n Simple_repeat Simple_repeat 2 51 0 6 951 1623 170 88 6 chr3 47999110 47999430 -111600353 - ORR1B1 LTR MaLR -14 380 35 6 951 596 328 77 81 chr3 47999615 47999966 -111599817 - ORR1E LTR MaLR 0 379 1 6 951 227 364 91 48 chr3 48000585 48000793 -111598990 - MLT1G1 LTR MaLR -32 547 331 1 951 26 0 0 0 chr3 48001402 48001428 -111598355 + AT_rich Low_complexity Low_complexity 1 26 0 2 951 462 36 0 0 chr3 48003473 48003529 -111596254 + (TG)n Simple_repeat Simple_repeat 1 56 0 3 951 494 371 43 7 chr3 48005036 48005318 -111594465 - B4A SINE B4 0 292 1 4 951 3828 167 8 29 chr3 48005716 48006432 -111593351 - Lx2 LINE L1 -1 6996 6296 5 951 5981 117 7 302 chr3 48006432 48007581 -111592202 + L1Md_F3 LINE L1 4104 5231 -646 6 951 1328 184 4 4 chr3 48007581 48007826 -111591957 - Lx2B LINE L1 -17 6983 6739 7 951 5896 117 7 302 chr3 48007826 48008770 -111591013 + L1Md_F3 LINE L1 4839 5585 -298 6 951 7851 47 8 0 chr3 48008771 48009745 -111590038 + L1Md_F3 LINE L1 5587 6568 -16 6 951 414 114 0 0 chr3 48010773 48010852 -111588931 + (CA)n Simple_repeat Simple_repeat 2 80 0 8 951 261 0 0 0 chr3 48010852 48010880 -111588903 + (GA)n Simple_repeat Simple_repeat 2 30 0 9 951 225 0 0 0 chr3 48010913 48010938 -111588845 + (TG)n Simple_repeat Simple_repeat 2 26 0 1 951 30 93 0 0 chr3 48011733 48011819 -111587964 + AT_rich Low_complexity Low_complexity 1 86 0 1 951 290 294 62 59 chr3 48012583 48012880 -111586903 - L1MA8 LINE L1 -46 6266 5961 1 951 351 355 56 4 chr3 48013094 48013346 -111586437 - L1MA8 LINE L1 -534 5757 5493 1 951 5226 57 6 0 chr3 48013347 48013358 -111586425 - L1Md_F2 LINE L1 -8 6574 6564 1 951 392 0 21 0 chr3 48013358 48013406 -111586377 + (TA)n Simple_repeat Simple_repeat 2 50 0 1 951 5226 57 6 0 chr3 48013406 48014056 -111585727 - L1Md_F2 LINE L1 -19 6563 5910 1 951 1154 47 0 0 chr3 48014056 48014204 -111585579 + L1_Mm LINE L1 4308 4455 -1428 1 951 2729 139 27 45 chr3 48014452 48014964 -111584819 - Lx3A LINE L1 -693 6288 5786 1 951 2136 110 6 10 chr3 48014964 48015141 -111584642 + Lx3A LINE L1 6302 6479 -502 1 951 738 110 13 52 chr3 48015141 48015294 -111584489 - L1_Mus3 LINE L1 -6 6632 6486 1 951 2136 110 6 10 chr3 48015294 48015428 -111584355 + Lx3A LINE L1 6480 6612 -369 1 951 185 0 0 39 chr3 48015872 48015898 -111583885 + (TTTG)n Simple_repeat Simple_repeat 4 28 0 1 951 180 0 0 0 chr3 48016099 48016119 -111583664 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1 951 1357 174 31 42 chr3 48016131 48016418 -111583365 - Lx LINE L1 -7 6647 6364 2 951 354 338 12 56 chr3 48016593 48016753 -111583030 + RSINE1 SINE B4 11 163 -2 2 951 227 79 26 0 chr3 48016880 48016918 -111582865 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 2 951 210 71 0 0 chr3 48016930 48016958 -111582825 + (GAAA)n Simple_repeat Simple_repeat 2 29 0 2 951 672 238 37 0 chr3 48016976 48017140 -111582643 + Lx7 LINE L1 6927 7096 -600 2 951 335 262 91 23 chr3 48017161 48017337 -111582446 - Lx7 LINE L1 0 7696 7509 2 951 5165 147 6 0 chr3 48017380 48018478 -111581305 + L1_Mus4 LINE L1 4917 6020 -616 2 951 262 297 68 0 chr3 48018522 48018596 -111581187 - Lx6 LINE L1 -283 7177 7099 2 951 3221 234 58 4 chr3 48019125 48019550 -111580233 + L1_Mur2 LINE L1 509 973 -6113 2 951 414 0 0 0 chr3 48019550 48019596 -111580187 + (TAAA)n Simple_repeat Simple_repeat 2 47 0 2 951 3771 169 24 28 chr3 48019596 48020571 -111579212 + L1_Mur2 LINE L1 974 1936 -3941 2 951 30233 94 11 0 chr3 48020577 48025779 -111574004 + L1Md_F2 LINE L1 331 5586 -297 3 951 7593 64 6 9 chr3 48025779 48026778 -111573005 + L1Md_F2 LINE L1 5587 6582 0 3 951 2798 230 87 15 chr3 48026778 48027844 -111571939 + Lx4A LINE L1 5870 7057 -1 3 951 26569 151 18 9 chr3 48028618 48034043 -111565740 + L1VL1 LINE L1 410 5877 -6 3 951 4662 90 9 2 chr3 48034050 48034692 -111565091 + L1_Mus3 LINE L1 5989 6635 -3 3 951 1209 226 3 0 chr3 48037448 48037745 -111562038 + Lx5 LINE L1 1339 1636 -4241 3 951 842 155 18 6 chr3 48037744 48037903 -111561880 + Lx5 LINE L1 2836 2993 -2884 3 951 1537 63 0 14 chr3 48037903 48038113 -111561670 + L1_Mus1 LINE L1 6361 6567 0 3 951 5669 180 151 113 chr3 48038135 48040226 -111559557 + Lx5 LINE L1 4035 6219 -1241 3 951 4639 91 9 0 chr3 48040232 48040872 -111558911 - L1_Mus3 LINE L1 -7 6631 5986 3 951 1150 66 0 0 chr3 48040872 48041024 -111558759 + L1_Mus2 LINE L1 6415 6566 0 3 951 2762 114 2 13 chr3 48041032 48041477 -111558306 - L1_Mus3 LINE L1 -572 5994 5554 3 951 2083 134 0 0 chr3 48041478 48041798 -111557985 + L1_Mus3 LINE L1 5198 5517 -366 3 951 3560 217 30 36 chr3 48041795 48042607 -111557176 + Lx5 LINE L1 6238 7044 -6 3 951 3405 126 7 23 chr3 48042816 48043640 -111556143 - L1Md_F LINE L1 -4467 1416 625 3 951 708 310 11 38 chr3 48044061 48044326 -111555457 + Lx6 LINE L1 7175 7432 -28 3 951 525 32 0 0 chr3 48044924 48044987 -111554796 + (CA)n Simple_repeat Simple_repeat 2 64 0 4 951 361 133 24 12 chr3 48045109 48045193 -111554590 + (TAAA)n Simple_repeat Simple_repeat 4 88 0 4 951 1070 169 16 0 chr3 48045979 48046162 -111553621 + B2_Mm2 SINE B2 2 187 -8 4 951 3489 119 6 3 chr3 48046840 48047640 -111552143 - Lx LINE L1 -563 6091 5288 4 951 7117 63 26 6 chr3 48047635 48048573 -111551210 - L1Md_F2 LINE L1 -1 6581 5626 4 951 1768 196 6 6 chr3 48048572 48048936 -111550847 - Lx LINE L1 -583 5303 4940 4 951 3243 149 34 0 chr3 48048942 48049479 -111550304 + Lx LINE L1 6093 6647 -7 4 951 4380 204 40 10 chr3 48049582 48050640 -111549143 - Lx LINE L1 -1252 4625 3537 4 951 5067 247 49 23 chr3 48050640 48052989 -111546794 + Lx5 LINE L1 4607 7008 -42 4 951 24 77 0 0 chr3 48053190 48053242 -111546541 + AT_rich Low_complexity Low_complexity 1 52 0 4 951 21 0 0 0 chr3 48053411 48053432 -111546351 + AT_rich Low_complexity Low_complexity 1 21 0 4 951 529 77 9 63 chr3 48054107 48054218 -111545565 - L1Md_F3 LINE L1 -10 6574 6470 4 951 1818 227 145 75 chr3 48054412 48055189 -111544594 - RMER6C LTR ERVK 0 720 45 5 951 351 0 0 0 chr3 48055189 48055228 -111544555 + (TG)n Simple_repeat Simple_repeat 2 40 0 5 951 3176 93 4 11 chr3 48055233 48055687 -111544096 - L1_Mus1 LINE L1 -4 6563 6113 5 951 1818 219 149 70 chr3 48055687 48055731 -111544052 - RMER6C LTR ERVK -646 44 1 5 951 2016 196 51 32 chr3 48056528 48056825 -111542958 + MTC LTR MaLR 1 309 -112 5 951 450 0 0 0 chr3 48056825 48056875 -111542908 + (TTTA)n Simple_repeat Simple_repeat 2 51 0 5 951 2016 196 51 32 chr3 48056875 48056987 -111542796 + MTC LTR MaLR 310 418 -3 5 951 1581 161 80 6 chr3 48058021 48058346 -111541437 + RMER16 LTR ERVK 57 405 -128 5 951 225 0 0 0 chr3 48058346 48058371 -111541412 + (TAAAA)n Simple_repeat Simple_repeat 2 26 0 5 951 273 44 133 0 chr3 48058375 48058420 -111541363 + RMER16 LTR ERVK 467 517 -16 5 951 5884 75 46 0 chr3 48058519 48059316 -111540467 - L1_Mus2 LINE L1 0 6566 5733 5 951 580 341 16 24 chr3 48059308 48059557 -111540226 - Lx8 LINE L1 -225 7248 7002 5 951 5300 158 9 6 chr3 48060205 48061092 -111538691 - Lx2 LINE L1 0 6997 6108 5 951 1600 133 14 29 chr3 48061092 48061371 -111538412 + Lx2 LINE L1 5909 6183 -814 5 951 24 32 0 0 chr3 48062452 48062483 -111537300 + AT_rich Low_complexity Low_complexity 1 31 0 6 951 23 0 0 0 chr3 48063140 48063163 -111536620 + AT_rich Low_complexity Low_complexity 1 23 0 6 951 21 0 0 0 chr3 48063542 48063563 -111536220 + AT_rich Low_complexity Low_complexity 1 21 0 6 951 350 160 41 0 chr3 48064444 48064613 -111535170 + (TAGA)n Simple_repeat Simple_repeat 4 179 0 6 951 524 162 16 6 chr3 48065150 48065270 -111534513 + Lx LINE L1 5558 5677 -977 6 951 306 176 141 11 chr3 48065275 48065367 -111534416 - Lx LINE L1 -5 6649 6546 6 951 2187 111 3 3 chr3 48065366 48065690 -111534093 + Lx LINE L1 5672 5995 -659 6 951 1142 89 0 0 chr3 48065705 48065851 -111533932 + B1_Mus2 SINE Alu 2 147 0 6 951 574 152 34 0 chr3 48065854 48065972 -111533811 + A-rich Low_complexity Low_complexity 2 123 0 6 951 3794 149 5 34 chr3 48065982 48066654 -111533129 + Lx LINE L1 5998 6649 -5 6 951 443 300 39 42 chr3 48066679 48066964 -111532819 - L1_Mur3 LINE L1 -530 5350 5067 6 951 1502 224 38 8 chr3 48066965 48067365 -111532418 - L1_Mur3 LINE L1 -966 4914 4503 6 951 321 224 110 17 chr3 48067367 48067485 -111532298 - L1_Mur3 LINE L1 -1341 4539 4411 6 951 12946 108 11 11 chr3 48068528 48068676 -111531107 - L1VL2 LINE L1 -624 2991 2844 6 951 219 36 0 0 chr3 48068676 48068704 -111531079 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 7 951 12946 110 23 9 chr3 48068704 48071228 -111528555 - L1VL2 LINE L1 -772 2843 272 6 951 22 0 0 0 chr3 48072289 48072311 -111527472 + AT_rich Low_complexity Low_complexity 1 22 0 7 951 379 337 81 75 chr3 48072463 48072649 -111527134 - B4A SINE B4 0 292 106 7 951 54 40 0 0 chr3 48072875 48072950 -111526833 + AT_rich Low_complexity Low_complexity 1 75 0 7 951 258 323 59 37 chr3 48073045 48073072 -111526711 - ORR1E LTR MaLR -216 143 113 7 951 5095 126 53 9 chr3 48073072 48073928 -111525855 + Lx3_Mus LINE L1 6117 7009 0 7 951 258 323 59 37 chr3 48073928 48074035 -111525748 - ORR1E LTR MaLR -247 112 6 7 951 356 409 74 50 chr3 48074172 48074457 -111525326 + MER21B LTR ERV1 313 604 -259 7 951 1426 233 31 14 chr3 48074457 48074809 -111524974 + RLTR15 LTR ERVK 1 358 -1 7 951 356 409 74 50 chr3 48074809 48074927 -111524856 + MER21B LTR ERV1 605 726 -137 7 951 832 276 10 0 chr3 48075143 48075346 -111524437 + B3 SINE B2 11 215 -1 7 951 303 319 138 70 chr3 48075721 48076105 -111523678 + L1M5 LINE L1 2965 3374 -2772 7 951 305 298 73 16 chr3 48076293 48076416 -111523367 + MLT2C1 LTR ERVL 99 228 -169 8 951 2507 178 78 36 chr3 48077138 48077662 -111522121 + MT2B LTR ERVL 1 546 -55 8 951 1216 77 0 0 chr3 48077662 48077817 -111521966 - L1_Mus2 LINE L1 -284 6282 6128 8 951 1722 104 3 73 chr3 48077817 48078106 -111521677 + L1_Mus2 LINE L1 6295 6563 -3 8 951 233 103 51 0 chr3 48078114 48078153 -111521630 + MT2B LTR ERVL 532 572 -29 8 951 413 236 9 26 chr3 48078139 48078151 -111521632 + ID SINE ID 72 81 -143 8 951 723 104 9 0 chr3 48078151 48078257 -111521526 + B1_Mus1 SINE Alu 3 109 -39 8 951 238 265 70 77 chr3 48078209 48078285 -111521498 + MLT2C1 LTR ERVL 417 496 -64 8 951 1135 51 0 0 chr3 48078285 48078422 -111521361 + B1_Mus2 SINE Alu 1 137 -10 8 951 216 0 0 0 chr3 48078422 48078446 -111521337 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 8 951 515 31 0 0 chr3 48078446 48078511 -111521272 + MT2B LTR ERVL 535 599 -2 8 951 408 259 36 54 chr3 48078850 48079017 -111520766 + RNLTR23 LTR ERVK 479 642 0 8 951 729 299 13 94 chr3 48079610 48079728 -111520055 - B3 SINE B2 0 216 99 8 951 3044 40 0 0 chr3 48079728 48080098 -111519685 + L1Md_T LINE L1 6213 6582 0 9 951 729 299 13 94 chr3 48080098 48080212 -111519571 - B3 SINE B2 -118 98 3 8 951 682 280 15 25 chr3 48081682 48081880 -111517903 - B3A SINE B2 -1 197 2 9 951 23 54 0 0 chr3 48082405 48082442 -111517341 + AT_rich Low_complexity Low_complexity 1 37 0 9 951 414 0 0 0 chr3 48082988 48083034 -111516749 + (TC)n Simple_repeat Simple_repeat 1 46 0 9 951 390 69 0 0 chr3 48083034 48083091 -111516692 + (CA)n Simple_repeat Simple_repeat 1 58 0 9 951 261 57 0 0 chr3 48083115 48083150 -111516633 + (TG)n Simple_repeat Simple_repeat 2 36 0 9 951 380 38 38 0 chr3 48084042 48084095 -111515688 + (TTTTG)n Simple_repeat Simple_repeat 2 56 0 9 951 454 355 75 43 chr3 48084189 48084488 -111515295 + MTEb LTR MaLR 1 329 -50 9 951 423 0 0 0 chr3 48084488 48084535 -111515248 + (TA)n Simple_repeat Simple_repeat 2 48 0 9 951 429 328 33 33 chr3 48084539 48084750 -111515033 - B3 SINE B2 -3 213 3 9 951 454 342 34 51 chr3 48084750 48084795 -111514988 + MTEb LTR MaLR 330 375 -4 9 951 371 289 10 0 chr3 48085001 48085105 -111514678 - L1_Mur3 LINE L1 -6876 836 732 1 951 502 379 27 34 chr3 48085271 48085563 -111514220 + B4A SINE B4 1 290 -2 1 951 846 0 0 0 chr3 48085608 48085702 -111514081 + (GA)n Simple_repeat Simple_repeat 1 94 0 1 951 1531 178 4 11 chr3 48086079 48086352 -111513431 - Lx2B LINE L1 -385 6615 6345 1 951 1859 204 24 0 chr3 48086353 48086736 -111513047 + Lx2 LINE L1 6605 6996 -1 1 951 8088 49 2 1 chr3 48087326 48088359 -111511424 - L1Md_F2 LINE L1 -6 6576 5543 1 951 363 340 21 21 chr3 48089063 48089207 -111510576 - B3A SINE B2 -16 182 39 1 951 1857 94 4 26 chr3 48090093 48090365 -111509418 + L1_Mus2 LINE L1 6301 6566 0 1 951 1422 95 0 3 chr3 48090370 48090720 -111509063 + (GAA)n Simple_repeat Simple_repeat 1 348 0 1 951 6453 4 1 0 chr3 48091332 48092052 -111507731 - L1Md_A LINE L1 0 6582 5862 1 951 266 135 89 9 chr3 48092053 48092165 -111507618 + (TA)n Simple_repeat Simple_repeat 2 122 0 1 951 950 104 7 0 chr3 48092169 48092313 -111507470 - L1_Mus1 LINE L1 -5 6562 6418 1 951 23 0 0 0 chr3 48093930 48093953 -111505830 + AT_rich Low_complexity Low_complexity 1 23 0 1 951 23 68 0 0 chr3 48094390 48094434 -111505349 + AT_rich Low_complexity Low_complexity 1 44 0 1 951 1407 209 3 7 chr3 48094764 48095058 -111504725 + Lx5 LINE L1 5718 6010 -1040 1 951 1121 283 89 11 chr3 48095051 48095401 -111504382 + Lx6 LINE L1 6998 7374 -86 1 951 1713 253 172 0 chr3 48095867 48096437 -111503346 - Lx9 LINE L1 -11 7633 6966 1 951 347 297 46 23 chr3 48096562 48096693 -111503090 + B4A SINE B4 111 244 -48 1 951 222 37 0 0 chr3 48096736 48096763 -111503020 + (CA)n Simple_repeat Simple_repeat 2 28 0 1 951 402 57 0 0 chr3 48096809 48096862 -111502921 + (CA)n Simple_repeat Simple_repeat 2 54 0 1 951 30 59 0 0 chr3 48097143 48097194 -111502589 + AT_rich Low_complexity Low_complexity 1 51 0 1 951 326 283 7 51 chr3 48097832 48097956 -111501827 + PB1D7 SINE Alu 3 122 -27 1 951 2188 172 19 23 chr3 48098901 48099329 -111500454 - Lx2 LINE L1 -18 6979 6554 1 951 246 81 0 0 chr3 48099672 48099709 -111500074 + (CTA)n Simple_repeat Simple_repeat 2 38 0 1 951 222 359 0 0 chr3 48100148 48100226 -111499557 - L2c LINE L2 -19 3368 3291 1 951 278 181 14 0 chr3 48100860 48100932 -111498851 - Lx9 LINE L1 -9 7635 7563 1 951 277 158 70 0 chr3 48100968 48101025 -111498758 - Lx9 LINE L1 -195 7449 7389 1 951 705 226 128 39 chr3 48101243 48101446 -111498337 + URR1A DNA MER1_type 6 226 0 1 951 312 48 0 0 chr3 48101521 48101563 -111498220 + (TG)n Simple_repeat Simple_repeat 2 43 0 1 951 1668 61 0 5 chr3 48101767 48101982 -111497801 + L1Md_F2 LINE L1 6357 6570 -12 1 951 323 272 48 42 chr3 48102297 48102462 -111497321 - L1MA8 LINE L1 -12 6279 6114 1 951 438 357 25 89 chr3 48102606 48102809 -111496974 - B3A SINE B2 -5 193 4 1 951 236 0 91 0 chr3 48103169 48103213 -111496570 + (CAAAA)n Simple_repeat Simple_repeat 1 48 0 1 952 349 307 104 47 chr3 48103638 48103850 -111495933 + MLT1A LTR MaLR 24 247 -127 1 952 229 89 44 0 chr3 48105412 48105457 -111494326 + (CAA)n Simple_repeat Simple_repeat 2 48 0 1 952 4944 117 16 24 chr3 48105903 48106721 -111493062 - Lx3A LINE L1 -9 6972 6162 1 952 1076 41 0 14 chr3 48106724 48106872 -111492911 - L1Md_F2 LINE L1 -12 6570 6425 1 952 1194 122 0 27 chr3 48106872 48107091 -111492692 - Lx3_Mus LINE L1 -824 6185 5973 1 952 281 275 192 47 chr3 48107351 48107523 -111492260 - L2 LINE L2 -1189 2230 2015 1 952 875 157 23 0 chr3 48107523 48107695 -111492088 - L1_Mus3 LINE L1 -4 6634 6459 1 952 281 275 192 47 chr3 48107695 48107839 -111491944 - L2 LINE L2 -1405 2014 1868 1 952 288 79 0 0 chr3 48110844 48110882 -111488901 - Lx2 LINE L1 -491 6506 6469 1 952 2631 115 0 18 chr3 48110879 48111269 -111488514 + Lx2 LINE L1 6501 6883 -114 1 952 1358 171 10 3 chr3 48111285 48111585 -111488198 - L1_Mur3 LINE L1 -2457 3423 3122 1 952 7488 128 29 1 chr3 48111587 48112757 -111487026 - Lx2A1 LINE L1 -4 7004 5802 1 952 2916 198 14 117 chr3 48112757 48112887 -111486896 - L1_Mur3 LINE L1 -2748 3132 3054 1 952 731 42 0 10 chr3 48112887 48112983 -111486800 + (TTTC)n Simple_repeat Simple_repeat 2 96 0 1 952 2916 198 14 117 chr3 48112983 48113272 -111486511 - L1_Mur3 LINE L1 -2827 3053 2800 1 952 888 133 0 0 chr3 48113272 48113415 -111486368 + (TTCC)n Simple_repeat Simple_repeat 2 144 0 1 952 2916 198 14 117 chr3 48113415 48113678 -111486105 - L1_Mur3 LINE L1 -3081 2799 2538 1 952 869 315 44 28 chr3 48113721 48114083 -111485700 + ORR1D1 LTR MaLR 3 370 -4 1 952 25 99 0 0 chr3 48114458 48114539 -111485244 + AT_rich Low_complexity Low_complexity 1 81 0 1 952 1249 77 168 5 chr3 48114539 48114735 -111485048 - L1_Mus1 LINE L1 -1 6566 6339 1 952 3854 86 8 2 chr3 48114736 48115272 -111484511 + L1_Mm LINE L1 4407 4945 -938 1 952 198 0 0 0 chr3 48115468 48115490 -111484293 + (TA)n Simple_repeat Simple_repeat 2 23 0 1 952 21 89 0 0 chr3 48115574 48115630 -111484153 + AT_rich Low_complexity Low_complexity 1 56 0 1 952 565 178 7 72 chr3 48116580 48116704 -111483079 + ID_B1 SINE B4 95 212 -12 1 952 576 0 0 0 chr3 48116704 48116768 -111483015 + (CAAAA)n Simple_repeat Simple_repeat 2 65 0 1 952 565 178 7 72 chr3 48116768 48116782 -111483001 + ID_B1 SINE B4 213 224 0 1 952 441 350 99 47 chr3 48117185 48117550 -111482233 - MLT1-int LTR MaLR -742 629 246 1 952 21 0 0 0 chr3 48117965 48117986 -111481797 + AT_rich Low_complexity Low_complexity 1 21 0 1 952 2003 117 27 59 chr3 48118160 48118497 -111481286 - ORR1A3 LTR MaLR 0 326 1 1 952 295 319 320 10 chr3 48118540 48118752 -111481031 - B4A SINE B4 -6 286 10 1 952 342 0 0 0 chr3 48118901 48118939 -111480844 + (TA)n Simple_repeat Simple_repeat 1 38 0 1 952 37927 45 2 3 chr3 48119041 48125494 -111474289 - L1Md_T LINE L1 0 6585 43 1 952 32 57 0 0 chr3 48125675 48125728 -111474055 + AT_rich Low_complexity Low_complexity 1 53 0 1 952 273 26 0 0 chr3 48125783 48125822 -111473961 + L1_Mus2 LINE L1 6527 6565 -1 1 952 23 68 0 0 chr3 48127122 48127166 -111472617 + AT_rich Low_complexity Low_complexity 1 44 0 1 952 325 204 114 0 chr3 48127761 48127850 -111471933 - ID4_ SINE ID -47 105 9 1 952 550 252 29 15 chr3 48128092 48128297 -111471486 + RMER1C Other Other 1096 1303 -39 1 952 345 47 0 0 chr3 48128858 48128901 -111470882 + (TG)n Simple_repeat Simple_repeat 1 43 0 1 952 201 158 0 0 chr3 48129655 48129693 -111470090 + T-rich Low_complexity Low_complexity 1 38 0 1 952 419 304 120 33 chr3 48129711 48129986 -111469797 - Tigger5 DNA MER2_type 0 2406 2108 1 952 2241 209 45 10 chr3 48130150 48130638 -111469145 + RLTR28 LTR ERVL 1 505 -19 1 952 582 310 21 47 chr3 48130665 48130858 -111468925 - ID_B1 SINE B4 -34 190 3 1 952 340 281 60 24 chr3 48130894 48131062 -111468721 + Tigger7 DNA MER2_type 2276 2449 -42 1 952 1168 55 0 0 chr3 48131145 48131290 -111468493 + B1_Mus2 SINE Alu 3 147 0 1 952 183 138 30 30 chr3 48131290 48131350 -111468433 + A-rich Low_complexity Low_complexity 8 67 0 1 952 191 136 0 43 chr3 48131916 48131962 -111467821 + T-rich Low_complexity Low_complexity 2 45 0 1 952 477 321 47 0 chr3 48131978 48132171 -111467612 + Lx8 LINE L1 7066 7267 -206 1 952 22 35 0 0 chr3 48132369 48132398 -111467385 + AT_rich Low_complexity Low_complexity 1 29 0 1 952 276 100 0 0 chr3 48132682 48132722 -111467061 + (TA)n Simple_repeat Simple_repeat 2 41 0 1 952 750 39 0 0 chr3 48133826 48133929 -111465854 + L1Md_T LINE L1 6480 6582 0 1 952 493 285 37 37 chr3 48134050 48134185 -111465598 + B1_Mur1 SINE Alu 10 144 -5 1 952 369 0 0 0 chr3 48134238 48134279 -111465504 + (TG)n Simple_repeat Simple_repeat 1 41 0 1 952 270 0 0 0 chr3 48134279 48134308 -111465475 + (GA)n Simple_repeat Simple_repeat 1 30 0 1 952 189 350 0 48 chr3 48135305 48135389 -111464394 - L3 LINE CR1 -891 3598 3519 1 952 1059 350 42 19 chr3 48135712 48136303 -111463480 - Lx8 LINE L1 -156 7317 6713 1 952 536 312 100 4 chr3 48136464 48136734 -111463049 + Lx9 LINE L1 7110 7405 -239 1 952 24 96 0 0 chr3 48136805 48136878 -111462905 + AT_rich Low_complexity Low_complexity 1 73 0 1 952 231 36 0 0 chr3 48138226 48138254 -111461529 + (CA)n Simple_repeat Simple_repeat 1 28 0 1 952 28 61 0 0 chr3 48138787 48138836 -111460947 + AT_rich Low_complexity Low_complexity 1 49 0 1 952 302 324 48 21 chr3 48139398 48139543 -111460240 - RSINE1 SINE B4 -15 150 2 1 952 651 255 101 34 chr3 48139829 48140036 -111459747 - RMER6D LTR ERVK 0 720 500 1 952 1917 270 79 31 chr3 48140051 48140669 -111459114 - RMER6C LTR ERVK -42 648 1 1 952 628 154 48 16 chr3 48140669 48140794 -111458989 - RMER6-int LTR ERVK 0 3177 3049 1 952 783 254 0 23 chr3 48140926 48141099 -111458684 - RLTR21 LTR ERVK -52 1520 1352 1 952 3253 165 10 5 chr3 48141100 48141686 -111458097 - Lx LINE L1 -359 5524 4936 1 952 6672 135 19 15 chr3 48141686 48142782 -111457001 + Lx LINE L1 5548 6647 -7 1 952 6364 168 46 61 chr3 48142819 48142870 -111456913 - RLTR21 LTR ERVK -220 1352 1291 1 952 439 69 28 0 chr3 48142870 48142942 -111456841 + (CA)n Simple_repeat Simple_repeat 1 74 0 1 952 6364 168 46 61 chr3 48142942 48143350 -111456433 - RLTR21 LTR ERVK -282 1290 916 1 952 1157 58 0 0 chr3 48143350 48143489 -111456294 + B1_Mus2 SINE Alu 2 140 -7 1 952 933 9 0 0 chr3 48143490 48143596 -111456187 + (GAAA)n Simple_repeat Simple_repeat 3 108 0 1 952 6364 168 46 61 chr3 48143596 48144501 -111455282 - RLTR21 LTR ERVK -657 915 6 1 952 399 169 0 0 chr3 48144506 48144577 -111455206 - RMER6-int LTR ERVK -118 3059 2989 1 952 324 110 35 44 chr3 48144578 48144692 -111455091 + T-rich Low_complexity Low_complexity 2 114 0 1 952 509 203 4 45 chr3 48144701 48144858 -111454925 + RMER1C Other Other 1200 1328 -14 1 952 225 0 0 0 chr3 48144862 48144887 -111454896 + (CA)n Simple_repeat Simple_repeat 2 26 0 1 952 226 305 149 20 chr3 48145089 48145290 -111454493 - RLTR25A LTR ERVK 0 1028 802 1 952 21 36 0 0 chr3 48145371 48145399 -111454384 + AT_rich Low_complexity Low_complexity 1 28 0 1 952 7972 104 53 9 chr3 48145400 48146724 -111453059 - Lx3A LINE L1 -58 6923 5527 1 952 330 313 57 88 chr3 48146968 48147186 -111452597 - RLTR25A LTR ERVK -822 206 1 1 952 2206 58 3 23 chr3 48147516 48147818 -111451965 - L1Md_F2 LINE L1 0 6582 6287 1 952 5327 108 4 11 chr3 48147818 48148604 -111451179 - L1_Mus2 LINE L1 -6 6560 5781 1 952 25496 120 64 11 chr3 48148970 48154519 -111445264 - L1Md_F2 LINE L1 -2 6580 708 2 952 343 228 34 26 chr3 48154519 48154636 -111445147 - L1Md_F2 LINE L1 -5824 792 675 2 952 1274 97 15 5 chr3 48155279 48155507 -111444276 + L1_Mus3 LINE L1 6430 6638 0 2 952 615 236 223 7 chr3 48155640 48155761 -111444022 - Lx9 LINE L1 -8 7636 7503 2 952 344 22 22 0 chr3 48155761 48155806 -111443977 + (CA)n Simple_repeat Simple_repeat 2 47 0 2 952 615 236 223 7 chr3 48155806 48155966 -111443817 - Lx9 LINE L1 -142 7502 7295 2 952 3270 244 31 28 chr3 48156090 48156845 -111442938 - Lx9 LINE L1 0 7644 6882 2 952 426 79 0 0 chr3 48156845 48156908 -111442875 + (TATG)n Simple_repeat Simple_repeat 1 63 0 2 952 1218 44 36 3 chr3 48156908 48157294 -111442489 + (TCTA)n Simple_repeat Simple_repeat 1 399 0 2 952 3270 244 31 28 chr3 48157294 48157475 -111442308 - Lx9 LINE L1 -763 6881 6705 2 952 896 246 36 95 chr3 48157447 48157838 -111441945 + Lx9 LINE L1 5651 6018 -1626 2 952 364 266 34 20 chr3 48157862 48158008 -111441775 + Lx9 LINE L1 6099 6246 -1398 2 952 492 270 41 0 chr3 48158095 48158267 -111441516 - B3 SINE B2 -7 209 3 2 952 502 276 72 0 chr3 48158268 48158420 -111441363 + Lx9 LINE L1 6328 6490 -1154 2 952 868 236 0 22 chr3 48158721 48158903 -111440880 - ORR1B1 LTR MaLR -216 178 1 2 952 3615 239 60 13 chr3 48158903 48160193 -111439590 - ORR1B1-int LTR MaLR 0 1509 1 2 952 1561 222 66 6 chr3 48160197 48160559 -111439224 - ORR1B1 LTR MaLR -8 386 3 2 952 21 57 0 0 chr3 48161435 48161470 -111438313 + AT_rich Low_complexity Low_complexity 1 35 0 2 952 285 280 17 17 chr3 48162988 48163108 -111436675 + (CATA)n Simple_repeat Simple_repeat 1 120 0 2 952 180 182 0 0 chr3 48163110 48163154 -111436629 + (CATATA)n Simple_repeat Simple_repeat 3 46 0 2 952 192 235 0 0 chr3 48163186 48163254 -111436529 + (CA)n Simple_repeat Simple_repeat 1 68 0 2 952 1275 199 124 67 chr3 48163426 48163782 -111436001 + RMER6C LTR ERVK 1 376 -314 2 952 489 110 0 0 chr3 48163786 48163859 -111435924 + (GGGA)n Simple_repeat Simple_repeat 4 76 0 2 952 4855 18 0 0 chr3 48163892 48164457 -111435326 - L1Md_T LINE L1 -331 5552 4988 2 952 466 38 0 0 chr3 48164457 48164510 -111435273 + L1Md_T LINE L1 5534 5586 -297 2 952 8409 32 1 0 chr3 48164510 48165502 -111434281 + L1Md_T LINE L1 5587 6579 -3 2 952 14952 181 71 19 chr3 48165606 48169684 -111430099 - L1_Mur1 LINE L1 -778 5099 880 2 952 322 261 8 8 chr3 48170244 48170375 -111429408 + (TA)n Simple_repeat Simple_repeat 1 131 0 2 952 299 274 70 9 chr3 48170964 48171078 -111428705 - L1_Rod LINE L1 -51 5796 5676 2 952 238 65 81 0 chr3 48171315 48171377 -111428406 + (GTTTG)n Simple_repeat Simple_repeat 2 68 0 2 952 23651 127 20 12 chr3 48172217 48176846 -111422937 - L1_Mus2 LINE L1 0 6566 1899 2 952 867 192 0 0 chr3 48176839 48177000 -111422783 - L1VL4 LINE L1 -5598 704 544 2 952 369 271 19 0 chr3 48177003 48177110 -111422673 - L1_Mus2 LINE L1 -5833 783 675 2 952 26 50 0 0 chr3 48178317 48178357 -111421426 + AT_rich Low_complexity Low_complexity 1 40 0 2 952 360 155 0 0 chr3 48178507 48178578 -111421205 + CT-rich Low_complexity Low_complexity 1 71 0 2 952 23 33 0 0 chr3 48179616 48179646 -111420137 + AT_rich Low_complexity Low_complexity 1 30 0 2 952 209 119 24 0 chr3 48179673 48179715 -111420068 + (TATATG)n Simple_repeat Simple_repeat 5 47 0 2 952 427 229 8 85 chr3 48180551 48180680 -111419103 + RLTR19-int LTR ERVK 979 1097 -5040 2 952 7031 50 1 0 chr3 48180885 48181756 -111418027 + L1Md_F2 LINE L1 4715 5586 -297 2 952 8090 45 0 0 chr3 48181756 48182738 -111417045 + L1Md_F2 LINE L1 5587 6568 -14 2 952 33 0 0 0 chr3 48182738 48182771 -111417012 + AT_rich Low_complexity Low_complexity 1 33 0 2 952 599 146 30 40 chr3 48182816 48182958 -111416825 + RLTR19-int LTR ERVK 2220 2325 -3812 2 952 1456 222 52 23 chr3 48182958 48183388 -111416395 + RLTR19-int LTR ERVK 2817 3190 -2947 2 952 692 115 1 1 chr3 48183445 48183554 -111416229 + Lx LINE L1 5842 5950 -1026 2 952 414 0 0 0 chr3 48183953 48183999 -111415784 + (TC)n Simple_repeat Simple_repeat 2 47 0 2 952 261 0 0 0 chr3 48183999 48184027 -111415756 + (TG)n Simple_repeat Simple_repeat 2 30 0 2 952 10025 76 4 9 chr3 48185726 48187102 -111412681 + L1Md_F2 LINE L1 4218 5586 -297 2 952 7665 63 3 9 chr3 48187103 48188102 -111411681 + L1Md_F2 LINE L1 5588 6580 -2 2 952 1834 150 10 19 chr3 48188178 48188490 -111411293 - RLTR27 LTR ERVK 0 309 1 2 952 835 174 0 0 chr3 48188952 48189090 -111410693 + RMER6D LTR ERVK 3 140 -580 2 952 412 233 11 32 chr3 48189114 48189207 -111410576 + RMER6D LTR ERVK 50 140 -580 2 952 371 224 0 0 chr3 48189218 48189285 -111410498 + RMER6D LTR ERVK 74 140 -580 2 952 393 244 11 32 chr3 48189270 48189363 -111410420 + RMER6D LTR ERVK 50 140 -580 2 952 400 233 11 32 chr3 48189387 48189480 -111410303 + RMER6D LTR ERVK 50 140 -580 2 952 348 239 0 0 chr3 48189491 48189558 -111410225 + RMER6D LTR ERVK 74 140 -580 2 952 275 231 0 0 chr3 48189530 48189582 -111410201 + RMER6D LTR ERVK 74 125 -595 2 952 408 233 11 32 chr3 48189582 48189675 -111410108 + RMER6D LTR ERVK 50 140 -580 2 952 388 244 11 32 chr3 48189660 48189753 -111410030 + RMER6D LTR ERVK 50 140 -580 2 952 412 229 12 36 chr3 48189777 48189894 -111409889 + RMER6D LTR ERVK 50 140 -580 2 952 408 233 11 32 chr3 48189894 48189987 -111409796 + RMER6D LTR ERVK 50 140 -580 2 952 396 209 0 0 chr3 48189998 48190065 -111409718 + RMER6D LTR ERVK 74 140 -580 2 952 371 224 0 0 chr3 48190076 48190143 -111409640 + RMER6D LTR ERVK 74 140 -580 2 952 277 231 0 0 chr3 48190115 48190167 -111409616 + RMER6D LTR ERVK 74 125 -595 2 952 408 233 11 32 chr3 48190167 48190260 -111409523 + RMER6D LTR ERVK 50 140 -580 2 952 371 224 0 0 chr3 48190271 48190338 -111409445 + RMER6D LTR ERVK 74 140 -580 2 952 330 254 0 0 chr3 48190310 48190377 -111409406 + RMER6D LTR ERVK 74 140 -580 2 952 245 250 0 0 chr3 48190349 48190401 -111409382 + RMER6D LTR ERVK 74 125 -595 2 952 408 233 11 32 chr3 48190401 48190494 -111409289 + RMER6D LTR ERVK 50 140 -580 2 952 294 211 0 0 chr3 48190505 48190557 -111409226 + RMER6D LTR ERVK 74 125 -595 2 952 408 233 11 32 chr3 48190557 48190650 -111409133 + RMER6D LTR ERVK 50 140 -580 2 952 371 224 0 0 chr3 48190661 48190728 -111409055 + RMER6D LTR ERVK 74 140 -580 2 952 330 254 0 0 chr3 48190700 48190767 -111409016 + RMER6D LTR ERVK 74 140 -580 2 952 408 233 11 32 chr3 48190791 48190884 -111408899 + RMER6D LTR ERVK 50 140 -580 2 952 388 244 11 32 chr3 48190908 48191001 -111408782 + RMER6D LTR ERVK 50 140 -580 2 952 1166 229 29 11 chr3 48190986 48191264 -111408519 + RMER6D LTR ERVK 50 332 -388 2 952 1775 89 19 4 chr3 48191354 48191612 -111408171 + Lx LINE L1 6213 6474 -180 2 952 3056 167 68 23 chr3 48191614 48192214 -111407569 - RLTR26 LTR ERVK 0 642 16 2 952 1197 142 0 15 chr3 48192214 48192414 -111407369 + Lx LINE L1 6456 6652 -2 2 952 946 318 74 12 chr3 48192417 48193085 -111406698 + Lx7 LINE L1 5088 5813 -1883 2 952 257 234 16 0 chr3 48193639 48193703 -111406080 + GA-rich Low_complexity Low_complexity 2 66 0 2 952 283 254 0 16 chr3 48194026 48194090 -111405693 + ID4 SINE ID 1 63 -20 2 952 2860 119 18 0 chr3 48194099 48194537 -111405246 - L1_Mus4 LINE L1 -13 6623 6178 2 952 312 47 0 0 chr3 48194537 48194586 -111405197 - L1_Mus4 LINE L1 -568 6070 6022 2 952 23 54 0 0 chr3 48194637 48194674 -111405109 + AT_rich Low_complexity Low_complexity 1 37 0 2 952 455 393 15 10 chr3 48194690 48194888 -111404895 + B4A SINE B4 74 272 -20 2 952 635 221 78 0 chr3 48195758 48195912 -111403871 - URR1A DNA MER1_type 0 226 61 2 952 23 68 0 0 chr3 48196553 48196597 -111403186 + AT_rich Low_complexity Low_complexity 1 44 0 2 952 254 340 44 111 chr3 48196928 48197153 -111402630 - MLT2C2 LTR ERVL -244 220 11 2 952 250 389 68 14 chr3 48197175 48197321 -111402462 + B4A SINE B4 1 154 -138 2 952 554 348 77 4 chr3 48198251 48198511 -111401272 + MLT2B4 LTR ERVL 51 329 -227 2 952 597 14 0 0 chr3 48198628 48198698 -111401085 + (CA)n Simple_repeat Simple_repeat 2 71 0 2 952 748 318 0 0 chr3 48199498 48199693 -111400090 - Lx6 LINE L1 -82 7378 7184 2 952 225 274 95 0 chr3 48200052 48200147 -111399636 + Charlie13a DNA Charlie 139 242 -1272 2 952 435 294 49 43 chr3 48201277 48201462 -111398321 + ERVL-B4-int LTR ERVL 2596 2781 -2933 2 952 341 211 0 50 chr3 48202708 48202788 -111396995 + Lx5 LINE L1 6689 6764 -286 2 952 335 322 240 50 chr3 48202813 48203387 -111396396 - L1MB8 LINE L1 -6 6172 5490 2 952 4558 132 24 1 chr3 48203392 48204107 -111395676 + Lx LINE L1 5911 6641 -13 2 952 1233 56 19 0 chr3 48204107 48204268 -111395515 - L1_Mus2 LINE L1 -523 6043 5880 2 952 2992 83 42 7 chr3 48204269 48204679 -111395104 + L1_Mus2 LINE L1 6122 6545 -21 2 952 825 65 195 0 chr3 48204679 48204802 -111394981 + B1_Mm SINE Alu 1 147 0 2 952 2992 83 42 7 chr3 48204802 48204878 -111394905 + L1_Mus2 LINE L1 6546 6566 0 2 952 275 311 65 30 chr3 48204935 48205134 -111394649 + L1M4 LINE L1 5298 5503 -671 2 952 1174 136 16 16 chr3 48205207 48205401 -111394382 - B2_Mm2 SINE B2 0 195 2 2 952 911 266 119 4 chr3 48205424 48205692 -111394091 + Lx5 LINE L1 6752 7050 0 2 952 21 0 0 0 chr3 48205819 48205840 -111393943 + AT_rich Low_complexity Low_complexity 1 21 0 2 952 561 30 0 0 chr3 48206339 48206406 -111393377 + (TCTA)n Simple_repeat Simple_repeat 2 68 0 2 952 22 0 0 0 chr3 48206549 48206571 -111393212 + AT_rich Low_complexity Low_complexity 1 22 0 2 952 257 68 23 0 chr3 48206774 48206818 -111392965 + (CAAAA)n Simple_repeat Simple_repeat 2 46 0 2 952 262 371 45 20 chr3 48206882 48207083 -111392700 - Lx9 LINE L1 -189 7455 7250 2 952 969 126 14 0 chr3 48207144 48207287 -111392496 - B1_Mus1 SINE Alu 0 148 4 2 952 3597 112 59 3 chr3 48207450 48208025 -111391758 - L1_Mur1 LINE L1 -462 5424 4818 2 952 4618 148 5 9 chr3 48208028 48208831 -111390952 + L1_Mur1 LINE L1 3994 4793 -1093 2 952 1871 137 11 83 chr3 48208868 48209065 -111390718 + ORR1A3 LTR MaLR 1 180 -146 2 952 1543 178 56 93 chr3 48209065 48209473 -111390310 + RLTR9C LTR ERVK 1 393 0 2 952 1871 137 11 83 chr3 48209473 48209626 -111390157 + ORR1A3 LTR MaLR 181 326 0 2 952 730 77 0 182 chr3 48210257 48210416 -111389367 + L1_Mus2 LINE L1 6417 6546 -20 2 952 2339 55 3 0 chr3 48210412 48210703 -111389080 - L1_Mus3 LINE L1 -462 6104 5813 2 952 3110 110 49 10 chr3 48210704 48211198 -111388585 + L1_Mus3 LINE L1 6120 6632 -6 2 952 236 30 30 0 chr3 48211317 48211350 -111388433 + (GAAAA)n Simple_repeat Simple_repeat 2 35 0 2 952 243 0 0 0 chr3 48211421 48211448 -111388335 + (CA)n Simple_repeat Simple_repeat 2 28 0 2 952 1469 272 13 11 chr3 48211863 48212235 -111387548 - RLTR14 LTR ERV1 -5 377 5 2 952 27 49 0 0 chr3 48213236 48213277 -111386506 + AT_rich Low_complexity Low_complexity 1 41 0 2 952 1081 85 11 0 chr3 48213614 48213790 -111385993 + (TCTA)n Simple_repeat Simple_repeat 1 178 0 2 952 297 182 30 0 chr3 48213819 48213918 -111385865 + (TCTA)n Simple_repeat Simple_repeat 3 104 0 2 952 261 368 94 20 chr3 48213921 48214165 -111385618 - MLT2B4 LTR ERVL -63 493 232 2 952 255 100 0 0 chr3 48214402 48214442 -111385341 + Lx LINE L1 6576 6615 -39 2 952 35 24 0 0 chr3 48214476 48214518 -111385265 + AT_rich Low_complexity Low_complexity 1 42 0 2 952 231 138 58 52 chr3 48214522 48214713 -111385070 + (TTATA)n Simple_repeat Simple_repeat 1 192 0 2 952 1412 336 75 76 chr3 48214820 48215081 -111384702 - MTE-int LTR MaLR -580 1000 745 2 952 1691 205 15 33 chr3 48215081 48215470 -111384313 - RLTR14 LTR ERV1 0 382 1 2 952 1412 336 75 76 chr3 48215470 48216209 -111383574 - MTE-int LTR MaLR -836 744 1 2 952 207 0 0 0 chr3 48216249 48216272 -111383511 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2 952 256 350 129 44 chr3 48216281 48216529 -111383254 - ORR1E LTR MaLR -52 307 39 2 952 27 0 0 0 chr3 48216555 48216582 -111383201 + AT_rich Low_complexity Low_complexity 1 27 0 2 952 26 64 0 0 chr3 48216723 48216770 -111383013 + AT_rich Low_complexity Low_complexity 1 47 0 2 952 267 93 0 0 chr3 48217809 48217852 -111381931 + (CA)n Simple_repeat Simple_repeat 2 44 0 2 952 319 338 80 29 chr3 48218339 48218577 -111381206 - L1M2 LINE L1 -985 5158 4909 3 952 26 0 0 0 chr3 48218580 48218606 -111381177 + AT_rich Low_complexity Low_complexity 1 26 0 3 952 8806 135 19 4 chr3 48218607 48220009 -111379774 - Lx3B LINE L1 -3 6970 5551 3 952 5533 123 25 21 chr3 48220006 48220390 -111379393 + L1_Mur1 LINE L1 4588 4968 -918 3 952 2488 155 7 30 chr3 48220390 48220830 -111378953 + Lx2 LINE L1 6565 6994 -3 3 952 5533 123 25 21 chr3 48220830 48221381 -111378402 + L1_Mur1 LINE L1 4969 5526 -360 3 952 3437 111 24 4 chr3 48221696 48222230 -111377553 - Lx3A LINE L1 -3 6978 6434 3 952 304 250 65 43 chr3 48222246 48222384 -111377399 - L1M2 LINE L1 -1540 4600 4460 3 952 898 259 28 0 chr3 48222387 48222603 -111377180 - ORR1D1 LTR MaLR -152 222 1 3 952 353 302 75 72 chr3 48222919 48223240 -111376543 - Charlie1b DNA MER1_type -98 425 104 3 952 21 0 0 0 chr3 48223555 48223576 -111376207 + AT_rich Low_complexity Low_complexity 1 21 0 3 952 249 356 10 10 chr3 48223689 48223791 -111375992 + MLT1A1 LTR MaLR 29 130 -278 3 952 270 0 0 0 chr3 48224271 48224301 -111375482 + (TTG)n Simple_repeat Simple_repeat 2 31 0 3 952 290 45 23 0 chr3 48225044 48225088 -111374695 + (CAAAAA)n Simple_repeat Simple_repeat 2 46 0 3 952 433 278 113 80 chr3 48225370 48225660 -111374123 - MT2A LTR ERVL -124 477 92 3 952 2205 272 54 49 chr3 48225672 48226462 -111373321 + RMER1C Other Other 549 1342 0 3 952 387 0 0 0 chr3 48226465 48226508 -111373275 + (TAAAA)n Simple_repeat Simple_repeat 2 44 0 3 952 445 167 13 0 chr3 48226508 48226586 -111373197 - MT2A LTR ERVL -452 81 3 3 952 211 232 0 18 chr3 48228919 48228976 -111370807 + CT-rich Low_complexity Low_complexity 1 56 0 3 952 270 299 119 18 chr3 48229059 48229168 -111370615 - B4 SINE B4 -170 122 3 3 952 385 362 47 26 chr3 48229542 48229735 -111370048 - MLT1E LTR MaLR -11 642 446 3 952 498 17 0 0 chr3 48229782 48229841 -111369942 + (TG)n Simple_repeat Simple_repeat 2 60 0 3 952 4721 95 5 5 chr3 48230941 48231608 -111368175 + L1_Mus3 LINE L1 5972 6638 0 3 952 185 35 0 65 chr3 48231667 48231698 -111368085 + (TTTA)n Simple_repeat Simple_repeat 4 32 0 3 952 400 184 36 18 chr3 48231700 48231811 -111367972 - Lx3A LINE L1 -18 6963 6851 3 952 677 274 30 0 chr3 48232109 48232273 -111367510 - B3 SINE B2 -1 215 47 3 952 21 0 0 0 chr3 48232889 48232910 -111366873 + AT_rich Low_complexity Low_complexity 1 21 0 3 953 2531 286 90 110 chr3 48235246 48235868 -111363915 - Lx5 LINE L1 -2 7056 6466 3 953 597 28 0 0 chr3 48235868 48235939 -111363844 + (TTCC)n Simple_repeat Simple_repeat 1 71 0 3 953 1274 73 0 11 chr3 48235939 48236119 -111363664 + (TTTC)n Simple_repeat Simple_repeat 3 180 0 3 953 3072 239 97 19 chr3 48236119 48237023 -111362760 - Lx5 LINE L1 -593 6465 5587 3 953 361 183 93 19 chr3 48237024 48237110 -111362673 + B1_Mus2 SINE Alu 31 108 -41 3 953 36475 42 7 7 chr3 48237751 48243745 -111356038 + L1Md_A LINE L1 1 5586 -297 3 953 8319 40 0 0 chr3 48243745 48244741 -111355042 + L1Md_T LINE L1 5587 6582 0 3 953 36475 28 1 0 chr3 48244741 48244752 -111355031 + L1Md_A LINE L1 5587 5597 -286 3 953 396 362 68 23 chr3 48245778 48245931 -111353852 + MLT1D LTR MaLR 227 386 -119 3 953 2456 101 54 10 chr3 48245931 48246321 -111353462 + RLTR9E LTR ERVK 3 409 0 3 953 396 362 68 23 chr3 48246321 48246430 -111353353 + MLT1D LTR MaLR 387 501 -4 3 953 208 176 20 0 chr3 48246431 48246482 -111353301 + (TAAA)n Simple_repeat Simple_repeat 2 53 0 3 953 1186 206 128 4 chr3 48246603 48246876 -111352907 + ORR1C1 LTR MaLR 72 378 0 3 953 21 0 0 0 chr3 48247356 48247377 -111352406 + AT_rich Low_complexity Low_complexity 1 21 0 3 953 228 122 0 0 chr3 48248386 48248427 -111351356 + (CAAAAA)n Simple_repeat Simple_repeat 2 42 0 3 953 192 111 0 0 chr3 48248501 48248537 -111351246 + (TTGG)n Simple_repeat Simple_repeat 4 39 0 3 953 1087 79 0 0 chr3 48248537 48248677 -111351106 - B1_Mus1 SINE Alu -8 140 1 3 953 350 328 31 15 chr3 48248721 48248851 -111350932 - B1F SINE Alu 0 149 18 3 953 38016 45 8 2 chr3 48249033 48255257 -111344526 - L1Md_T LINE L1 0 6582 389 3 953 1018 260 47 6 chr3 48255601 48255945 -111343838 + L1_Mur3 LINE L1 3739 4096 -1784 3 953 231 310 38 114 chr3 48256335 48256466 -111343317 + MamRep1894 DNA hAT 1 121 -2 3 953 3531 188 62 100 chr3 48257960 48258898 -111340885 + RMER19B LTR ERVK 1 902 0 3 953 627 149 0 0 chr3 48259590 48259697 -111340086 + (TCTA)n Simple_repeat Simple_repeat 4 110 0 3 953 434 346 22 22 chr3 48259717 48259853 -111339930 - RSINE1 SINE B4 0 165 30 3 953 266 250 11 22 chr3 48260200 48260290 -111339493 + L1M2 LINE L1 5701 5789 -502 3 953 54 49 0 0 chr3 48261202 48261284 -111338499 + AT_rich Low_complexity Low_complexity 1 82 0 3 953 188 35 35 0 chr3 48261770 48261799 -111337984 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 3 953 3757 200 66 14 chr3 48261906 48262767 -111337016 - Lx3C LINE L1 -11 6965 6060 3 953 1475 161 68 3 chr3 48262770 48263094 -111336689 - MusHAL1 LINE L1 -576 2136 1792 3 953 12739 177 73 44 chr3 48263086 48268696 -111331087 - L1Md_T LINE L1 0 6582 803 3 953 321 174 0 0 chr3 48269410 48269479 -111330304 + (TA)n Simple_repeat Simple_repeat 1 69 0 3 953 1286 312 21 3 chr3 48269670 48270008 -111329775 + MTE2b LTR MaLR 18 361 -18 3 953 423 182 0 0 chr3 48270419 48270545 -111329238 + GA-rich Low_complexity Low_complexity 2 127 0 3 953 191 36 36 0 chr3 48270592 48270620 -111329163 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 3 953 393 306 72 24 chr3 48270622 48270873 -111328910 - L1M3 LINE L1 -574 5597 5335 3 953 1370 76 237 50 chr3 48271072 48271350 -111328433 - L1Md_F2 LINE L1 0 6582 6253 3 953 1175 55 0 7 chr3 48271365 48271513 -111328270 + B1_Mus1 SINE Alu 1 147 -1 3 953 247 316 63 0 chr3 48271543 48271638 -111328145 + B3 SINE B2 115 215 -1 3 953 486 33 0 0 chr3 48272244 48272304 -111327479 + (TCTA)n Simple_repeat Simple_repeat 3 62 0 3 953 979 95 0 28 chr3 48272628 48272769 -111327014 - B1_Mus2 SINE Alu -9 138 2 3 953 3605 98 52 2 chr3 48273231 48273772 -111326011 - L1_Mus3 LINE L1 -5 6633 6066 3 953 519 17 0 0 chr3 48273992 48274052 -111325731 + (CA)n Simple_repeat Simple_repeat 1 60 0 3 953 21 0 0 0 chr3 48274652 48274673 -111325110 + AT_rich Low_complexity Low_complexity 1 21 0 3 953 28 79 0 0 chr3 48276379 48276442 -111323341 + AT_rich Low_complexity Low_complexity 1 63 0 3 953 1914 214 66 52 chr3 48276584 48277102 -111322681 + RMER5 LTR ERV1 1 525 -9 3 953 28 29 0 0 chr3 48277224 48277259 -111322524 + AT_rich Low_complexity Low_complexity 1 35 0 3 953 515 343 109 39 chr3 48277259 48277745 -111322038 - Lx8 LINE L1 -6 7467 6948 3 953 28 61 0 0 chr3 48278811 48278860 -111320923 + AT_rich Low_complexity Low_complexity 1 49 0 3 953 1011 156 0 0 chr3 48279124 48279303 -111320480 + (TA)n Simple_repeat Simple_repeat 1 179 0 3 953 186 196 0 18 chr3 48279342 48279399 -111320384 + L3 LINE CR1 1171 1226 -3263 3 953 299 322 97 84 chr3 48279518 48279745 -111320038 + B4A SINE B4 1 234 -58 3 953 570 54 0 0 chr3 48279783 48279857 -111319926 + (TC)n Simple_repeat Simple_repeat 1 74 0 3 953 231 146 20 20 chr3 48279857 48279906 -111319877 + (CA)n Simple_repeat Simple_repeat 2 50 0 3 953 327 248 17 26 chr3 48281531 48281647 -111318136 - Lx9 LINE L1 -34 7610 7496 3 953 1132 237 52 39 chr3 48282063 48282450 -111317333 - Lx9 LINE L1 -34 7610 7219 3 953 324 0 0 0 chr3 48282477 48282513 -111317270 + (TTCA)n Simple_repeat Simple_repeat 3 38 0 3 953 575 312 5 5 chr3 48282513 48282722 -111317061 - B3 SINE B2 -7 209 1 3 953 23 0 0 0 chr3 48283229 48283252 -111316531 + AT_rich Low_complexity Low_complexity 1 23 0 3 953 3062 69 179 2 chr3 48283606 48284041 -111315742 + RLTR1B LTR ERV1 1 512 0 3 953 3855 202 4 3 chr3 48284204 48285073 -111314710 + Lx3C LINE L1 5496 6344 -632 3 953 2410 97 6 3 chr3 48285073 48285425 -111314358 - L1_Mus3 LINE L1 -6 6632 6280 3 953 3164 258 6 96 chr3 48285425 48285764 -111314019 + Lx3C LINE L1 6334 6601 -457 3 953 2735 178 122 5 chr3 48285765 48286337 -111313446 + Lx3C LINE L1 6336 6974 -2 3 953 375 332 58 53 chr3 48286385 48286439 -111313344 - Lx8 LINE L1 -688 6785 6740 3 953 1064 212 5 5 chr3 48286439 48286662 -111313121 + URR1B DNA MER1_type 1 223 -2 3 953 375 332 58 53 chr3 48286662 48286833 -111312950 - Lx8 LINE L1 -734 6739 6559 3 953 1945 220 51 39 chr3 48286855 48287342 -111312441 - ORR1C2-int LTR MaLR -860 510 18 3 953 790 300 75 11 chr3 48287352 48287713 -111312070 - ORR1C2 LTR MaLR 0 384 1 3 953 203 241 65 0 chr3 48288396 48288504 -111311279 + (TA)n Simple_repeat Simple_repeat 1 115 0 3 953 413 338 71 71 chr3 48289568 48289934 -111309849 - MER47A DNA MER2_type 0 366 1 3 953 189 0 0 0 chr3 48289973 48289994 -111309789 + (TA)n Simple_repeat Simple_repeat 2 22 0 3 953 1648 141 134 23 chr3 48290253 48290797 -111308986 + RLTR1C LTR ERV1 1 605 0 3 953 429 66 0 0 chr3 48292368 48292429 -111307354 + (CA)n Simple_repeat Simple_repeat 2 62 0 3 953 948 141 0 0 chr3 48292746 48292923 -111306860 + (TG)n Simple_repeat Simple_repeat 2 178 0 3 953 3341 68 50 2 chr3 48293524 48293984 -111305799 - RLTR45 LTR ERVK 0 482 1 3 953 28 0 0 0 chr3 48294578 48294606 -111305177 + AT_rich Low_complexity Low_complexity 1 28 0 3 953 311 137 14 0 chr3 48294901 48294974 -111304809 + CT-rich Low_complexity Low_complexity 2 75 0 3 953 495 60 0 0 chr3 48294976 48295043 -111304740 + (TG)n Simple_repeat Simple_repeat 1 67 0 3 953 270 56 0 0 chr3 48295043 48295079 -111304704 + (GA)n Simple_repeat Simple_repeat 2 37 0 3 953 21 0 0 0 chr3 48295196 48295217 -111304566 + AT_rich Low_complexity Low_complexity 1 21 0 3 953 21 71 0 0 chr3 48295406 48295448 -111304335 + AT_rich Low_complexity Low_complexity 1 42 0 3 953 29 0 0 0 chr3 48295780 48295809 -111303974 + GC_rich Low_complexity Low_complexity 1 29 0 3 953 257 206 37 0 chr3 48297231 48297338 -111302445 + (TCTA)n Simple_repeat Simple_repeat 3 113 0 4 953 278 258 29 49 chr3 48297595 48297697 -111302086 + RMER15 LTR ERVL 61 160 -415 4 953 332 339 87 0 chr3 48298077 48298260 -111301523 + RMER15 LTR ERVL 377 575 0 4 953 25 51 0 0 chr3 48298542 48298581 -111301202 + AT_rich Low_complexity Low_complexity 1 39 0 4 953 4558 81 16 3 chr3 48298718 48299676 -111300107 + ORR1A1-int LTR MaLR 1 1792 0 4 953 2710 42 26 9 chr3 48299676 48300016 -111299767 + ORR1A1 LTR MaLR 1 346 0 4 953 204 281 15 30 chr3 48300231 48300297 -111299486 - L2a LINE L2 -2 3424 3360 4 953 2013 95 10 10 chr3 48300576 48300873 -111298910 - L1_Mus3 LINE L1 0 6638 6342 4 953 3279 84 56 2 chr3 48300878 48301342 -111298441 + L1_Mus3 LINE L1 5830 6318 -320 4 953 1552 123 0 24 chr3 48301348 48301598 -111298185 - L1Md_F2 LINE L1 -2 6580 6337 4 953 276 53 0 0 chr3 48301779 48301817 -111297966 + (TTGG)n Simple_repeat Simple_repeat 2 39 0 4 953 2054 128 79 23 chr3 48301824 48302177 -111297606 - Lx LINE L1 -6 6648 6276 4 953 700 320 72 7 chr3 48302186 48302491 -111297292 + Lx8 LINE L1 6184 6508 -965 4 953 280 272 85 12 chr3 48302550 48302632 -111297151 - RLTR20C LTR ERVK -2 532 445 4 953 333 47 0 0 chr3 48302633 48302676 -111297107 + (CA)n Simple_repeat Simple_repeat 2 44 0 4 953 23004 172 16 18 chr3 48302749 48303079 -111296704 - L1VL2 LINE L1 -103 5780 5452 4 953 314 23 23 0 chr3 48303079 48303122 -111296661 + (TTG)n Simple_repeat Simple_repeat 2 45 0 4 953 23004 172 16 18 chr3 48303122 48303835 -111295948 - L1VL2 LINE L1 -432 5451 4747 4 953 199 0 65 0 chr3 48303835 48303866 -111295917 + (GTTTG)n Simple_repeat Simple_repeat 2 34 0 4 953 23004 164 17 16 chr3 48303866 48307883 -111291900 - L1VL2 LINE L1 -1137 4746 717 4 953 1009 129 7 0 chr3 48308801 48308948 -111290835 + B1_Mus1 SINE Alu 1 148 0 4 953 514 146 10 10 chr3 48308948 48309029 -111290754 + polypurine Low_complexity Low_complexity 1 81 0 4 953 1620 0 0 0 chr3 48309029 48309209 -111290574 + (GGGAA)n Simple_repeat Simple_repeat 1 180 0 4 953 514 146 10 10 chr3 48309209 48309231 -111290552 + polypurine Low_complexity Low_complexity 82 103 0 4 953 450 0 0 0 chr3 48309235 48309285 -111290498 + (GAAAA)n Simple_repeat Simple_repeat 2 51 0 4 953 285 75 0 0 chr3 48309891 48309931 -111289852 + (CCA)n Simple_repeat Simple_repeat 1 40 0 4 953 388 213 41 19 chr3 48310019 48310204 -111289579 - Lx4B LINE L1 -7 7051 6818 4 953 556 270 24 34 chr3 48310204 48310367 -111289416 + B3 SINE B2 54 212 -4 4 953 252 86 0 0 chr3 48312557 48312592 -111287191 + (ATG)n Simple_repeat Simple_repeat 2 36 0 4 953 446 376 0 0 chr3 48312984 48313125 -111286658 + ID_B1 SINE B4 84 224 0 4 953 654 260 115 11 chr3 48313134 48313317 -111286466 + B3 SINE B2 8 209 -7 4 953 261 350 10 0 chr3 48314730 48314833 -111284950 + ID_B1 SINE B4 111 214 -10 4 953 515 287 50 69 chr3 48314943 48315145 -111284638 - MTD LTR MaLR -16 403 206 4 953 798 70 0 0 chr3 48315148 48315262 -111284521 + (TTCC)n Simple_repeat Simple_repeat 1 114 0 4 953 642 326 42 4 chr3 48315299 48315536 -111284247 - Lx9 LINE L1 -752 6892 6647 4 953 581 259 31 3 chr3 48315546 48315772 -111284011 + Lx9 LINE L1 5658 5924 -1720 4 953 654 341 19 5 chr3 48316237 48316452 -111283331 - MTD LTR MaLR -197 222 5 4 953 888 318 84 45 chr3 48317287 48317643 -111282140 + MTD LTR MaLR 1 370 -49 4 953 887 276 65 52 chr3 48317672 48318108 -111281675 + MTC-int LTR MaLR 10 451 -647 4 953 481 312 61 30 chr3 48318368 48318566 -111281217 - B3 SINE B2 -2 214 11 4 953 26 0 0 0 chr3 48319701 48319727 -111280056 + AT_rich Low_complexity Low_complexity 1 26 0 4 953 33 66 0 0 chr3 48319850 48319911 -111279872 + AT_rich Low_complexity Low_complexity 1 61 0 4 953 21 0 0 0 chr3 48320177 48320198 -111279585 + AT_rich Low_complexity Low_complexity 1 21 0 4 953 258 372 48 58 chr3 48320881 48321089 -111278694 - L2c LINE L2 -59 3328 3123 4 953 401 416 55 12 chr3 48321553 48321898 -111277885 + MER21B LTR ERV1 19 378 -485 4 953 432 309 115 54 chr3 48321935 48322195 -111277588 + MER21B LTR ERV1 460 735 -128 4 953 777 39 115 0 chr3 48322195 48322299 -111277484 - L1_Mus4 LINE L1 -554 6082 5967 4 953 777 22 0 0 chr3 48322302 48322393 -111277390 + (GA)n Simple_repeat Simple_repeat 2 92 0 4 953 444 82 0 0 chr3 48322394 48322455 -111277328 + (GGA)n Simple_repeat Simple_repeat 2 62 0 4 953 759 22 0 0 chr3 48322458 48322547 -111277236 + (GGGAA)n Simple_repeat Simple_repeat 3 91 0 4 953 22 0 0 0 chr3 48322729 48322751 -111277032 + AT_rich Low_complexity Low_complexity 1 22 0 4 953 239 184 0 0 chr3 48322988 48323026 -111276757 + L1M2b LINE L1 690 727 -6482 4 953 3363 88 15 2 chr3 48323988 48324455 -111275328 + MT2C_Mm LTR ERVL 1 473 -2 4 953 1892 228 143 2 chr3 48324723 48325212 -111274571 + RMER15 LTR ERVL 2 559 -16 4 953 7659 52 16 12 chr3 48325835 48326816 -111272967 + L1Md_F2 LINE L1 5587 6571 -11 4 953 341 173 115 109 chr3 48326943 48327099 -111272684 + L1M4 LINE L1 3584 3740 -2406 4 953 1113 78 0 19 chr3 48327312 48327469 -111272314 + B2_Mm2 SINE B2 16 169 -26 4 953 267 313 32 53 chr3 48327474 48327663 -111272120 + L1M2 LINE L1 4889 5073 -1070 4 953 296 250 0 0 chr3 48327854 48327906 -111271877 + RSINE1 SINE B4 73 124 -41 4 953 495 0 0 0 chr3 48327906 48327961 -111271822 + (CA)n Simple_repeat Simple_repeat 2 56 0 4 953 2447 179 85 15 chr3 48329263 48329790 -111269993 + RLTR12A LTR ERVK 1 564 -4 4 953 327 85 0 0 chr3 48330293 48330340 -111269443 + (TG)n Simple_repeat Simple_repeat 1 47 0 4 953 890 277 20 12 chr3 48330501 48330753 -111269030 + RMER15 LTR ERVL 280 533 -42 4 953 219 197 0 53 chr3 48331082 48331157 -111268626 + (TATAA)n Simple_repeat Simple_repeat 2 72 0 4 953 21 71 0 0 chr3 48332083 48332125 -111267658 + AT_rich Low_complexity Low_complexity 1 42 0 4 953 2026 238 28 50 chr3 48332134 48332678 -111267105 - Lx6 LINE L1 -762 6698 6167 4 953 539 250 65 5 chr3 48332695 48332880 -111266903 - Lx7 LINE L1 -1784 5912 5717 4 953 17685 207 44 92 chr3 48332870 48334855 -111264928 - Lx5 LINE L1 -3 7047 5046 4 953 1022 172 195 52 chr3 48334855 48335198 -111264585 + RLTR9E LTR ERVK 1 392 -17 4 953 17685 207 44 92 chr3 48335198 48336141 -111263642 - Lx5 LINE L1 -3 5045 4093 4 953 1212 61 0 0 chr3 48336141 48336288 -111263495 + B1_Mus2 SINE Alu 1 147 0 4 953 17685 188 36 111 chr3 48336288 48337433 -111262350 - Lx5 LINE L1 -1785 4092 3051 4 953 468 0 0 0 chr3 48337433 48337485 -111262298 + (TG)n Simple_repeat Simple_repeat 2 53 0 4 953 17685 193 36 98 chr3 48337485 48339609 -111260174 - Lx5 LINE L1 -2827 3050 901 4 953 569 251 106 11 chr3 48340005 48340194 -111259589 - Lx7 LINE L1 -131 5749 5543 4 953 953 195 112 102 chr3 48340275 48340322 -111259461 + RMER1C Other Other 998 1043 -299 4 953 2893 108 0 27 chr3 48340322 48340768 -111259015 + L1_Mus4 LINE L1 6184 6617 -19 4 953 312 27 0 0 chr3 48340768 48340805 -111258978 + (TAA)n Simple_repeat Simple_repeat 3 39 0 4 953 953 195 112 102 chr3 48340805 48341041 -111258742 + RMER1C Other Other 1044 1284 -58 4 953 23 54 0 0 chr3 48341211 48341248 -111258535 + AT_rich Low_complexity Low_complexity 1 37 0 4 953 215 31 31 0 chr3 48342660 48342692 -111257091 + (TATAA)n Simple_repeat Simple_repeat 1 33 0 4 953 1179 322 92 25 chr3 48343879 48343940 -111255843 - Lx8 LINE L1 -643 6830 6776 4 953 5738 109 24 30 chr3 48343940 48344847 -111254936 + RLTR13D6 LTR ERVK 1 902 0 4 953 1179 322 92 25 chr3 48344847 48345349 -111254434 - Lx8 LINE L1 -698 6775 6229 4 953 280 289 20 10 chr3 48345398 48345496 -111254287 - L1ME2 LINE L1 -276 5888 5790 4 953 26 82 0 0 chr3 48346012 48346073 -111253710 + AT_rich Low_complexity Low_complexity 1 61 0 4 953 2728 49 0 14 chr3 48346116 48346470 -111253313 - L1Md_F3 LINE L1 -11 6573 6225 4 953 1758 278 56 81 chr3 48347491 48348169 -111251614 + MER67B LTR ERV1 1 661 0 4 953 22 0 0 0 chr3 48348421 48348443 -111251340 + AT_rich Low_complexity Low_complexity 1 22 0 4 953 3918 223 73 40 chr3 48348568 48350463 -111249320 - L1_Mur3 LINE L1 -3864 2016 55 4 953 432 323 38 73 chr3 48350611 48350925 -111248858 + L1M3e LINE L1 80 382 -6648 4 953 408 322 16 13 chr3 48351507 48351747 -111248036 + L1M3e LINE L1 1828 2066 -4971 4 953 5866 109 2 15 chr3 48351757 48352633 -111247150 - L1_Mus4 LINE L1 -7 6629 5765 4 953 11829 113 24 5 chr3 48352633 48355160 -111244623 - L1VL4 LINE L1 -905 2654 76 4 953 294 29 0 0 chr3 48355557 48355592 -111244191 + (TAA)n Simple_repeat Simple_repeat 2 36 0 4 953 446 321 30 86 chr3 48355598 48355867 -111243916 + L1MA8 LINE L1 5754 6007 -176 4 953 433 120 11 11 chr3 48356061 48356154 -111243629 + (CA)n Simple_repeat Simple_repeat 2 94 0 4 953 5222 202 93 36 chr3 48356198 48358570 -111241213 - Lx4B LINE L1 -3 6997 4394 4 953 594 63 0 0 chr3 48358719 48358798 -111240985 + (TG)n Simple_repeat Simple_repeat 2 80 0 4 953 287 254 17 17 chr3 48359102 48359162 -111240621 + MER2 DNA MER2_type 9 68 -277 4 953 474 284 69 29 chr3 48359275 48359449 -111240334 - RMER30 DNA MER1_type -2 200 20 4 953 316 388 27 76 chr3 48359996 48360180 -111239603 + B3A SINE B2 9 183 -15 4 953 1254 97 27 5 chr3 48361105 48361292 -111238491 + B2_Mm2 SINE B2 3 193 -2 4 953 739 200 211 0 chr3 48362511 48362686 -111237097 - B3 SINE B2 -3 213 2 4 953 391 330 61 48 chr3 48363155 48363384 -111236399 - MTEa LTR MaLR -147 232 1 4 953 5022 58 1 12 chr3 48364779 48365428 -111234355 + L1Md_F2 LINE L1 5929 6570 -12 4 954 343 340 0 10 chr3 48365968 48366072 -111233711 + MER5B DNA MER1_type 75 177 -1 4 954 822 21 0 0 chr3 48366561 48366657 -111233126 + (GAA)n Simple_repeat Simple_repeat 2 97 0 4 954 5237 63 1 12 chr3 48366834 48367512 -111232271 - L1Md_F2 LINE L1 -12 6570 5900 4 954 2992 153 13 19 chr3 48367554 48368080 -111231703 + Lx2B LINE L1 6474 6996 -4 4 954 22 0 0 0 chr3 48368924 48368946 -111230837 + AT_rich Low_complexity Low_complexity 1 22 0 4 954 331 210 17 28 chr3 48369450 48369631 -111230152 + (TA)n Simple_repeat Simple_repeat 2 180 0 4 954 2191 175 58 17 chr3 48369665 48370077 -111229706 + RLTR12A LTR ERVK 4 432 -136 4 954 3802 139 19 11 chr3 48370077 48370430 -111229353 - L1_Mm LINE L1 -1045 4838 4490 4 954 3062 115 0 0 chr3 48370430 48370866 -111228917 + RLTR10C LTR ERVK 1 436 0 5 954 3802 139 19 11 chr3 48370866 48371158 -111228625 - L1_Mm LINE L1 -1394 4489 4188 4 954 4929 16 0 0 chr3 48371195 48371760 -111228023 + L1Md_T LINE L1 5022 5586 -297 5 954 8016 53 0 0 chr3 48371761 48372756 -111227027 + L1Md_T LINE L1 5588 6582 0 5 954 3274 110 0 4 chr3 48372778 48373333 -111226450 + L1_Mus4 LINE L1 6150 6636 0 5 954 305 250 24 0 chr3 48373333 48373417 -111226366 + RLTR12A LTR ERVK 419 504 -64 4 954 314 148 32 32 chr3 48373387 48373450 -111226333 + B1_Mus2 SINE Alu 79 141 -6 5 954 1158 111 0 0 chr3 48373454 48373661 -111226122 + (GAAA)n Simple_repeat Simple_repeat 1 207 0 5 954 240 35 0 0 chr3 48373715 48373744 -111226039 + (CA)n Simple_repeat Simple_repeat 1 29 0 5 954 425 321 14 43 chr3 48376728 48376868 -111222915 - ID_B1 SINE B4 -8 216 81 5 954 27 0 0 0 chr3 48377479 48377506 -111222277 + AT_rich Low_complexity Low_complexity 1 27 0 5 954 1192 183 49 31 chr3 48377539 48377801 -111221982 - Lx5 LINE L1 -42 7008 6763 5 954 923 190 0 0 chr3 48377795 48377958 -111221825 + Lx5 LINE L1 6193 6355 -695 5 954 21 36 0 0 chr3 48379034 48379062 -111220721 + AT_rich Low_complexity Low_complexity 1 28 0 5 954 803 263 40 5 chr3 48380039 48380238 -111219545 + B3 SINE B2 4 209 -7 5 954 484 364 31 0 chr3 48380829 48380991 -111218792 + B3 SINE B2 2 168 -48 5 954 4284 53 0 32 chr3 48382563 48383126 -111216657 - L1_Mus1 LINE L1 0 6567 6023 5 954 22 70 0 0 chr3 48384521 48384564 -111215219 + AT_rich Low_complexity Low_complexity 1 43 0 5 954 22 0 0 0 chr3 48385794 48385816 -111213967 + AT_rich Low_complexity Low_complexity 1 22 0 5 954 200 100 0 24 chr3 48386258 48386299 -111213484 + (CAAAAA)n Simple_repeat Simple_repeat 1 40 0 5 954 557 309 22 27 chr3 48386312 48386495 -111213288 - Lx8 LINE L1 -720 6753 6572 5 954 1915 195 149 22 chr3 48386509 48386998 -111212785 + RMER20B LTR ERVK 77 627 0 5 954 393 103 0 0 chr3 48387360 48387428 -111212355 + (CA)n Simple_repeat Simple_repeat 2 69 0 5 954 1428 57 0 49 chr3 48388003 48388163 -111211620 + B2_Mm1t SINE B2 1 160 -33 5 954 486 0 0 0 chr3 48388163 48388217 -111211566 + (TAAA)n Simple_repeat Simple_repeat 3 56 0 5 954 1428 57 0 49 chr3 48388217 48388259 -111211524 + B2_Mm1t SINE B2 161 193 0 5 954 1584 143 11 21 chr3 48388345 48388631 -111211152 + Lx3B LINE L1 6685 6967 -6 5 954 471 204 10 0 chr3 48388903 48389001 -111210782 + RLTR25B LTR ERVK 2 100 -928 5 954 2837 241 147 17 chr3 48389002 48390030 -111209753 + Lx4B LINE L1 5855 7049 -9 5 954 531 188 6 200 chr3 48390093 48390273 -111209510 + RLTR25B LTR ERVK 636 780 -248 5 954 423 210 56 16 chr3 48390240 48390366 -111209417 + RLTR25B LTR ERVK 898 1028 0 5 954 3803 210 55 99 chr3 48390728 48391794 -111207989 - RMER1A Other Other -2 1028 10 5 954 1490 295 44 48 chr3 48391797 48392299 -111207484 - RMER1B Other Other -560 506 7 5 954 344 200 31 0 chr3 48392556 48392621 -111207162 + ORR1C2 LTR MaLR 307 373 -11 5 954 279 328 0 0 chr3 48393378 48393445 -111206338 - B3 SINE B2 -149 67 1 5 954 2969 147 38 8 chr3 48394745 48395245 -111204538 - Lx4A LINE L1 -682 6376 5862 5 954 4152 135 20 2 chr3 48395246 48395886 -111203897 + Lx4A LINE L1 6393 7044 -14 5 954 332 77 19 0 chr3 48395886 48395938 -111203845 + (TAA)n Simple_repeat Simple_repeat 2 54 0 5 954 278 329 12 0 chr3 48395975 48396057 -111203726 + MTEa LTR MaLR 88 170 -209 5 954 430 304 47 13 chr3 48396074 48396224 -111203559 + MTEa LTR MaLR 222 376 -3 5 954 335 259 58 67 chr3 48396231 48396351 -111203432 + MTEa-int LTR MaLR 8 126 -1454 5 954 1263 348 79 49 chr3 48396356 48397112 -111202671 + MTEa-int LTR MaLR 232 1010 -570 5 954 348 333 23 16 chr3 48397284 48397412 -111202371 - MTE2b LTR MaLR -250 129 1 5 954 189 0 0 0 chr3 48398450 48398471 -111201312 + (A)n Simple_repeat Simple_repeat 1 21 0 5 954 270 317 30 0 chr3 48398775 48398876 -111200907 + ID_B1 SINE B4 111 214 -10 5 954 282 106 0 0 chr3 48399516 48399563 -111200220 + (TC)n Simple_repeat Simple_repeat 1 47 0 5 954 216 338 64 13 chr3 48399565 48399643 -111200140 - PB1D7 SINE Alu -18 102 21 5 954 1205 253 55 25 chr3 48399682 48400043 -111199740 - Lx9 LINE L1 -1668 5976 5605 5 954 4915 235 57 12 chr3 48400198 48401472 -111198311 + Lx9 LINE L1 6313 7643 -1 5 954 597 335 79 7 chr3 48401506 48401786 -111197997 - Lx8 LINE L1 -690 6783 6484 5 954 664 354 77 8 chr3 48401787 48402197 -111197586 + Lx8 LINE L1 6897 7366 -107 5 954 351 0 0 0 chr3 48402383 48402422 -111197361 + (TC)n Simple_repeat Simple_repeat 2 40 0 5 954 240 35 0 0 chr3 48402423 48402452 -111197331 + (TA)n Simple_repeat Simple_repeat 2 30 0 5 954 318 132 0 0 chr3 48402459 48402512 -111197271 + (TCCC)n Simple_repeat Simple_repeat 2 54 0 5 954 249 103 26 0 chr3 48402512 48402551 -111197232 + (TCCA)n Simple_repeat Simple_repeat 2 41 0 5 954 335 219 0 12 chr3 48404048 48404131 -111195652 + Lx9 LINE L1 6880 6961 -683 5 954 651 203 14 7 chr3 48404119 48404258 -111195525 + Lx9 LINE L1 7203 7342 -302 5 954 7364 111 10 1 chr3 48404282 48405848 -111193935 + L1_Mus4 LINE L1 5040 6619 -17 5 954 383 65 0 31 chr3 48405848 48405912 -111193871 + (TAA)n Simple_repeat Simple_repeat 3 64 0 5 954 479 201 374 10 chr3 48405912 48406006 -111193777 + Lx9 LINE L1 7361 7455 -189 5 954 483 18 0 0 chr3 48406006 48406062 -111193721 + (TA)n Simple_repeat Simple_repeat 2 57 0 5 954 479 201 374 10 chr3 48406062 48406173 -111193610 + Lx9 LINE L1 7456 7641 -3 5 954 441 285 88 96 chr3 48406882 48407247 -111192536 + HAL1 LINE L1 860 1221 -1286 5 954 341 261 99 56 chr3 48407763 48407925 -111191858 - RMER15 LTR ERVL -111 464 296 5 954 34 104 0 0 chr3 48409863 48409988 -111189795 + AT_rich Low_complexity Low_complexity 1 125 0 5 954 331 331 26 45 chr3 48410162 48410317 -111189466 - B4 SINE B4 0 292 141 5 954 658 314 24 0 chr3 48410721 48410931 -111188852 + ID_B1 SINE B4 2 216 -8 5 954 332 314 30 30 chr3 48410942 48411106 -111188677 + RSINE1 SINE B4 2 165 0 5 954 180 0 0 0 chr3 48411626 48411646 -111188137 + (TTTAA)n Simple_repeat Simple_repeat 4 23 0 5 954 228 67 0 0 chr3 48412353 48412383 -111187400 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 5 954 543 227 130 65 chr3 48415212 48415396 -111184387 + B3 SINE B2 7 202 -14 5 954 338 0 0 23 chr3 48415397 48415440 -111184343 + (CAAAA)n Simple_repeat Simple_repeat 2 43 0 5 954 1064 65 0 0 chr3 48415826 48415964 -111183819 + B1_Mus2 SINE Alu 10 147 0 5 954 1261 236 65 88 chr3 48416074 48416283 -111183500 + ORR1C1 LTR MaLR 1 225 -153 5 954 2161 45 8 4 chr3 48416283 48416551 -111183232 + L1_Mus1 LINE L1 6299 6567 0 5 954 1261 236 65 88 chr3 48416551 48416727 -111183056 + ORR1C1 LTR MaLR 226 377 -1 5 954 793 279 102 18 chr3 48416732 48417016 -111182767 - MTE2a LTR MaLR -66 313 6 5 954 285 286 13 0 chr3 48417072 48417149 -111182634 + MTE2a LTR MaLR 288 365 -14 5 954 25 51 0 0 chr3 48417752 48417791 -111181992 + AT_rich Low_complexity Low_complexity 1 39 0 5 954 480 136 0 0 chr3 48418505 48418593 -111181190 + (TG)n Simple_repeat Simple_repeat 1 88 0 5 954 429 308 11 40 chr3 48418708 48418884 -111180899 - Lx9 LINE L1 -310 7334 7164 5 954 201 39 0 0 chr3 48418910 48418936 -111180847 + (TG)n Simple_repeat Simple_repeat 1 26 0 5 954 698 126 7 0 chr3 48418938 48419073 -111180710 + (GA)n Simple_repeat Simple_repeat 2 137 0 5 954 256 299 0 0 chr3 48419077 48419144 -111180639 + GA-rich Low_complexity Low_complexity 2 68 0 5 954 932 145 0 11 chr3 48419145 48419319 -111180464 + G-rich Low_complexity Low_complexity 4 175 0 5 954 335 336 54 0 chr3 48419329 48419478 -111180305 - RSINE1 SINE B4 -4 161 5 5 954 709 326 29 29 chr3 48420319 48420559 -111179224 + B4 SINE B4 53 292 0 5 954 219 255 0 0 chr3 48420564 48420611 -111179172 + (CATA)n Simple_repeat Simple_repeat 4 50 0 5 954 1070 52 52 0 chr3 48420744 48420880 -111178903 + B1_Mus1 SINE Alu 2 144 -4 5 954 189 0 0 0 chr3 48420882 48420903 -111178880 + (TAAA)n Simple_repeat Simple_repeat 3 23 0 5 954 771 259 71 5 chr3 48421182 48421380 -111178403 + B3 SINE B2 6 216 0 5 954 4844 38 2 0 chr3 48422315 48422895 -111176888 + L1Md_T LINE L1 6002 6582 0 5 954 363 353 110 53 chr3 48422956 48423386 -111176397 + L1MD3 LINE L1 7316 7766 -229 5 954 185 35 0 65 chr3 48423386 48423417 -111176366 + (CATA)n Simple_repeat Simple_repeat 2 30 0 5 954 363 353 110 53 chr3 48423417 48423629 -111176154 + L1MD3 LINE L1 7767 7995 0 5 954 347 370 35 70 chr3 48423775 48424060 -111175723 - B4A SINE B4 -14 278 4 5 954 2042 101 10 7 chr3 48424177 48424476 -111175307 - L1_Mus3 LINE L1 -1 6637 6338 5 954 418 111 14 0 chr3 48424479 48424551 -111175232 + L1_Mus3 LINE L1 6252 6324 -314 5 954 375 310 116 56 chr3 48424551 48424749 -111175034 + MLT2B4 LTR ERVL 16 225 -331 5 954 21 0 0 0 chr3 48425611 48425632 -111174151 + AT_rich Low_complexity Low_complexity 1 21 0 5 954 333 0 0 0 chr3 48426260 48426297 -111173486 + (TAA)n Simple_repeat Simple_repeat 2 38 0 5 954 257 254 62 0 chr3 48426509 48426639 -111173144 + (TAGA)n Simple_repeat Simple_repeat 4 141 0 5 954 342 369 33 63 chr3 48426805 48427106 -111172677 + L1MC3 LINE L1 7269 7560 -225 5 954 24 0 0 0 chr3 48427116 48427140 -111172643 + AT_rich Low_complexity Low_complexity 1 24 0 5 954 218 98 0 47 chr3 48427308 48427351 -111172432 + (TCTCTG)n Simple_repeat Simple_repeat 2 42 0 5 954 231 259 24 0 chr3 48427375 48427460 -111172323 - Lx9 LINE L1 -37 7607 7521 5 954 483 69 0 0 chr3 48427467 48427539 -111172244 + (CA)n Simple_repeat Simple_repeat 1 72 0 5 954 697 269 316 0 chr3 48427543 48427883 -111171900 - Lx9 LINE L1 -179 7465 7019 5 954 609 301 0 6 chr3 48427902 48428059 -111171724 - ORR1D1 LTR MaLR -216 158 3 5 954 488 354 12 12 chr3 48428352 48428518 -111171265 - ID_B1 SINE B4 -49 175 10 5 954 208 98 24 24 chr3 48428656 48428698 -111171085 + (TTTTG)n Simple_repeat Simple_repeat 5 46 0 5 954 745 305 89 43 chr3 48428873 48429222 -111170561 + MTD LTR MaLR 55 419 0 5 954 773 355 18 54 chr3 48429278 48429611 -111170172 - MTE2b LTR MaLR -58 321 1 5 954 276 231 12 37 chr3 48429616 48429697 -111170086 + MER44D DNA MER2_type 37 115 -590 5 954 185 0 40 0 chr3 48429741 48429766 -111170017 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 5 954 366 23 0 0 chr3 48430151 48430194 -111169589 + (CA)n Simple_repeat Simple_repeat 2 44 0 5 954 218 105 26 0 chr3 48430526 48430564 -111169219 + (TA)n Simple_repeat Simple_repeat 1 39 0 5 954 747 268 209 9 chr3 48431867 48432183 -111167600 + MTEa LTR MaLR 1 379 0 5 954 310 378 145 5 chr3 48433253 48433269 -111166514 - B3 SINE B2 -3 213 198 6 954 525 16 0 0 chr3 48433269 48433331 -111166452 + (TG)n Simple_repeat Simple_repeat 2 63 0 6 954 355 360 55 8 chr3 48433331 48433500 -111166283 - B3A SINE B2 -19 197 2 6 954 767 191 0 33 chr3 48434457 48434609 -111165174 - B1_Mur3 SINE Alu 0 149 3 6 954 461 324 26 87 chr3 48434459 48434689 -111165094 - ID_B1 SINE B4 0 224 9 6 954 297 51 0 0 chr3 48435166 48435205 -111164578 + (TCC)n Simple_repeat Simple_repeat 1 39 0 6 954 597 28 0 0 chr3 48435205 48435276 -111164507 + (CTA)n Simple_repeat Simple_repeat 3 73 0 6 954 229 333 0 45 chr3 48436768 48436856 -111162927 - PB1 SINE Alu -11 116 33 6 954 305 343 80 29 chr3 48436887 48437025 -111162758 - B1F2 SINE Alu -3 146 2 6 954 297 402 61 0 chr3 48436889 48437053 -111162730 - ID_B1 SINE B4 -3 221 48 6 954 351 0 0 0 chr3 48437396 48437435 -111162348 + (TC)n Simple_repeat Simple_repeat 1 39 0 6 954 330 45 0 0 chr3 48437435 48437478 -111162305 + (CA)n Simple_repeat Simple_repeat 1 44 0 6 954 419 335 72 20 chr3 48438129 48438281 -111161502 + B4A SINE B4 10 169 -123 6 954 3267 126 121 16 chr3 48438491 48438893 -111160890 + Lx3_Mus LINE L1 676 1083 -5901 6 954 2289 82 106 0 chr3 48438893 48439234 -111160549 + L1_Mus2 LINE L1 6189 6565 -1 6 954 29062 97 52 21 chr3 48439234 48444909 -111154874 + Lx3_Mus LINE L1 1084 7009 0 6 954 474 61 0 0 chr3 48445029 48445095 -111154688 + (CA)n Simple_repeat Simple_repeat 2 67 0 6 954 261 277 109 3 chr3 48445897 48446025 -111153758 - MLT1A0 LTR MaLR -225 149 3 6 954 26 50 0 0 chr3 48446366 48446406 -111153377 + AT_rich Low_complexity Low_complexity 1 40 0 6 954 414 341 7 0 chr3 48447535 48447670 -111152113 - MIR SINE MIR -78 184 49 6 954 208 0 89 71 chr3 48448287 48448343 -111151440 + A-rich Low_complexity Low_complexity 2 58 0 6 954 286 204 0 0 chr3 48448349 48448398 -111151385 - MTD-int LTR MaLR -1320 50 2 6 954 459 206 247 66 chr3 48448400 48448566 -111151217 - MTD LTR MaLR -1 418 223 6 954 4034 222 26 12 chr3 48448805 48449709 -111150074 - Lx2B LINE L1 -321 6679 5763 6 954 735 273 78 4 chr3 48449728 48449971 -111149812 + Lx3C LINE L1 6713 6973 -3 6 954 308 164 15 0 chr3 48450126 48450193 -111149590 + GA-rich Low_complexity Low_complexity 3 70 0 6 954 462 341 28 11 chr3 48450193 48450371 -111149412 + B3A SINE B2 1 181 -17 6 954 201 246 53 0 chr3 48450651 48450708 -111149075 - MIRc SINE MIR -41 227 168 6 954 251 338 0 0 chr3 48451324 48451398 -111148385 - MTD LTR MaLR -288 91 18 6 954 305 47 23 0 chr3 48451752 48451795 -111147988 + (TATG)n Simple_repeat Simple_repeat 4 47 0 6 954 314 353 28 28 chr3 48451824 48452014 -111147769 - B4A SINE B4 -102 190 1 6 954 1166 203 64 0 chr3 48453392 48453628 -111146155 - L1_Mur3 LINE L1 -1771 4109 3859 6 954 29 47 0 0 chr3 48453682 48453725 -111146058 + AT_rich Low_complexity Low_complexity 1 43 0 6 954 339 85 0 0 chr3 48453841 48453888 -111145895 + (TA)n Simple_repeat Simple_repeat 1 47 0 6 954 530 206 16 0 chr3 48453917 48454043 -111145740 + Lx7 LINE L1 7567 7694 -2 6 954 28 29 0 0 chr3 48454087 48454122 -111145661 + AT_rich Low_complexity Low_complexity 1 35 0 6 954 23 0 0 0 chr3 48454446 48454469 -111145314 + AT_rich Low_complexity Low_complexity 1 23 0 6 954 23 33 0 0 chr3 48456496 48456526 -111143257 + AT_rich Low_complexity Low_complexity 1 30 0 6 954 244 356 97 15 chr3 48457371 48457505 -111142278 + ID_B1 SINE B4 77 221 -3 6 954 478 313 60 57 chr3 48457515 48457830 -111141953 + Lx8 LINE L1 7158 7473 0 6 954 494 378 20 15 chr3 48457907 48458106 -111141677 + B4A SINE B4 2 201 -91 6 954 297 0 0 0 chr3 48459731 48459764 -111140019 + (TCCC)n Simple_repeat Simple_repeat 4 36 0 6 954 1074 107 17 0 chr3 48459768 48459945 -111139838 + (TC)n Simple_repeat Simple_repeat 1 180 0 6 954 372 152 0 61 chr3 48460013 48460111 -111139672 - L1_Mur3 LINE L1 -4145 1735 1644 6 954 1861 266 51 29 chr3 48460132 48461064 -111138719 + Lx5 LINE L1 6180 7031 -19 6 954 275 85 21 0 chr3 48461064 48461111 -111138672 + (TAA)n Simple_repeat Simple_repeat 2 49 0 6 954 306 367 42 97 chr3 48462064 48462375 -111137408 + MLT1H LTR MaLR 11 304 -245 6 954 277 330 78 42 chr3 48462622 48462815 -111136968 + MIRb SINE MIR 53 252 -16 6 954 825 302 68 43 chr3 48463870 48464265 -111135518 + MTD LTR MaLR 1 405 -14 6 954 528 56 0 0 chr3 48466046 48466118 -111133665 + (CA)n Simple_repeat Simple_repeat 1 72 0 6 954 219 69 0 0 chr3 48466123 48466152 -111133631 + (TAAA)n Simple_repeat Simple_repeat 4 32 0 6 954 24 0 0 0 chr3 48466152 48466176 -111133607 + AT_rich Low_complexity Low_complexity 1 24 0 6 954 228 135 0 0 chr3 48466697 48466734 -111133049 + (CAAA)n Simple_repeat Simple_repeat 3 39 0 6 954 309 345 17 25 chr3 48466739 48466858 -111132925 + B4A SINE B4 2 119 -173 6 954 477 0 0 0 chr3 48466987 48467040 -111132743 + (CA)n Simple_repeat Simple_repeat 2 54 0 6 954 237 207 46 58 chr3 48467534 48467621 -111132162 + Tigger10 DNA Tigger 1460 1545 -298 6 954 419 281 35 138 chr3 48467822 48468053 -111131730 + B3 SINE B2 4 210 -6 6 954 388 297 16 58 chr3 48468905 48469148 -111130635 + L1MDa LINE L1 1136 1368 -5265 6 954 522 276 84 46 chr3 48469457 48469719 -111130064 + L1M2 LINE L1 3038 3309 -2834 6 954 256 333 62 26 chr3 48469780 48470085 -111129698 + L1_Mur1 LINE L1 3378 3693 -2193 6 954 380 255 55 24 chr3 48470124 48470289 -111129494 + L1MA4A LINE L1 5759 5928 -375 6 954 1826 142 46 10 chr3 48470293 48470600 -111129183 - ORR1A4 LTR MaLR -8 321 4 6 954 324 0 0 0 chr3 48470641 48470677 -111129106 + (TG)n Simple_repeat Simple_repeat 1 36 0 6 954 450 0 0 0 chr3 48470677 48470726 -111129057 + (GA)n Simple_repeat Simple_repeat 1 50 0 6 954 391 316 96 20 chr3 48471063 48471260 -111128523 + B3 SINE B2 3 214 -2 6 954 253 239 30 66 chr3 48471991 48472157 -111127626 + A-rich Low_complexity Low_complexity 1 160 0 6 954 297 0 0 0 chr3 48473484 48473517 -111126266 + (TG)n Simple_repeat Simple_repeat 1 33 0 6 954 305 320 43 43 chr3 48473531 48473694 -111126089 - MT2A LTR ERVL -81 452 290 6 954 423 329 23 33 chr3 48473959 48474173 -111125610 + B3 SINE B2 5 216 0 6 954 1346 269 104 11 chr3 48474994 48475540 -111124243 - Lx9 LINE L1 -8 7636 7040 6 954 228 226 0 0 chr3 48475541 48475603 -111124180 + (TTTA)n Simple_repeat Simple_repeat 3 64 0 6 954 735 186 69 32 chr3 48476115 48476304 -111123479 + RMER1A Other Other 830 1025 -5 6 954 8067 37 0 0 chr3 48477022 48478333 -111121450 - L1Md_T LINE L1 0 6582 5272 6 954 9317 21 0 0 chr3 48478330 48479415 -111120368 + L1Md_T LINE L1 4184 5268 -615 6 954 526 288 14 0 chr3 48479639 48479785 -111119998 - B1_Mur1 SINE Alu -1 148 1 6 954 644 75 11 0 chr3 48479861 48479955 -111119828 + MusHAL1 LINE L1 265 359 -2353 6 954 262 243 10 10 chr3 48480004 48480108 -111119675 + CT-rich Low_complexity Low_complexity 1 104 0 6 954 879 183 0 0 chr3 48480722 48480902 -111118881 + (TA)n Simple_repeat Simple_repeat 1 180 0 6 954 1128 214 113 62 chr3 48481467 48481821 -111117962 - ORR1D1 LTR MaLR -2 372 1 6 954 457 318 70 74 chr3 48482390 48482689 -111117094 + RLTR17 LTR ERVK 127 424 -268 6 954 446 49 0 16 chr3 48483465 48483527 -111116256 + (CAA)n Simple_repeat Simple_repeat 3 63 0 6 954 740 21 11 0 chr3 48483745 48483839 -111115944 + (TAGA)n Simple_repeat Simple_repeat 2 96 0 6 954 22 56 0 0 chr3 48484437 48484473 -111115310 + AT_rich Low_complexity Low_complexity 1 36 0 6 954 267 249 98 89 chr3 48484524 48484727 -111115056 + Lx9 LINE L1 7420 7624 -20 6 954 504 0 0 0 chr3 48485145 48485201 -111114582 + (TG)n Simple_repeat Simple_repeat 2 57 0 6 954 335 290 83 31 chr3 48485424 48485616 -111114167 - L1M6 LINE L1 -5454 1042 841 6 954 687 294 32 37 chr3 48486157 48486344 -111113439 - B3A SINE B2 -10 188 3 6 954 21 0 0 0 chr3 48486579 48486600 -111113183 + AT_rich Low_complexity Low_complexity 1 21 0 6 954 22 0 0 0 chr3 48487066 48487088 -111112695 + AT_rich Low_complexity Low_complexity 1 22 0 6 954 3531 214 80 17 chr3 48487213 48488079 -111111704 - Lx4B LINE L1 -2 7056 6137 6 954 834 289 25 10 chr3 48489223 48489426 -111110357 - B3 SINE B2 -10 206 1 6 954 324 161 0 0 chr3 48489608 48489670 -111110113 + (CA)n Simple_repeat Simple_repeat 2 63 0 6 954 195 114 0 0 chr3 48489673 48489708 -111110075 + (TATATG)n Simple_repeat Simple_repeat 4 38 0 6 954 817 211 47 23 chr3 48490159 48490417 -111109366 + ORR1B2 LTR MaLR 1 304 -63 6 954 595 331 59 53 chr3 48491665 48492120 -111107663 + MER34 LTR ERV1 38 494 -48 6 954 604 74 21 0 chr3 48492293 48492388 -111107395 + (TG)n Simple_repeat Simple_repeat 1 97 0 6 954 405 254 100 0 chr3 48492390 48492504 -111107279 + PB1D9 SINE Alu 14 138 -11 6 954 201 344 76 8 chr3 48492717 48492849 -111106934 + L2 LINE L2 2741 2881 -538 6 954 21 36 0 0 chr3 48493823 48493851 -111105932 + AT_rich Low_complexity Low_complexity 1 28 0 6 954 23 0 0 0 chr3 48494594 48494617 -111105166 + AT_rich Low_complexity Low_complexity 1 23 0 6 954 21 57 0 0 chr3 48494816 48494851 -111104932 + AT_rich Low_complexity Low_complexity 1 35 0 6 954 21 36 0 0 chr3 48495007 48495035 -111104748 + AT_rich Low_complexity Low_complexity 1 28 0 6 954 315 0 0 0 chr3 48495256 48495291 -111104492 + (TG)n Simple_repeat Simple_repeat 1 35 0 6 954 428 342 83 72 chr3 48495581 48495871 -111103912 - MTE2a LTR MaLR -14 365 73 6 954 835 10 0 10 chr3 48495896 48495990 -111103793 - L1Md_F3 LINE L1 -697 5887 5794 6 954 2963 57 0 13 chr3 48495990 48496379 -111103404 + L1Md_F3 LINE L1 6184 6567 -17 7 955 7332 112 11 1 chr3 48498379 48500000 -111099783 - L1_Mus3 LINE L1 0 6638 5023 7 955 23 33 0 0 chr3 48500032 48500062 -111099721 + AT_rich Low_complexity Low_complexity 1 30 0 1 955 411 38 0 0 chr3 48501242 48501295 -111098488 + (CA)n Simple_repeat Simple_repeat 2 54 0 2 955 28 0 0 0 chr3 48501402 48501430 -111098353 + AT_rich Low_complexity Low_complexity 1 28 0 3 955 4225 194 51 28 chr3 48501539 48502421 -111097362 + RMER19B LTR ERVK 1 902 0 4 955 564 137 0 0 chr3 48502439 48502541 -111097242 + (CA)n Simple_repeat Simple_repeat 1 102 0 5 955 308 304 40 76 chr3 48502720 48503023 -111096760 + L1M3 LINE L1 5327 5625 -546 6 955 1112 254 80 14 chr3 48503023 48503374 -111096409 + ORR1D1 LTR MaLR 1 374 0 7 955 308 302 43 82 chr3 48503374 48503420 -111096363 + L1M3 LINE L1 5626 5664 -507 6 955 1155 126 20 20 chr3 48503637 48503832 -111095951 - B2_Mm2 SINE B2 0 195 1 8 955 26 50 0 0 chr3 48504041 48504081 -111095702 + AT_rich Low_complexity Low_complexity 1 40 0 9 955 343 332 43 100 chr3 48504449 48504680 -111095103 - MTEa LTR MaLR -161 218 1 1 955 298 268 61 20 chr3 48505404 48505503 -111094280 - MTE2b LTR MaLR -276 103 1 1 955 238 343 30 0 chr3 48505517 48505584 -111094199 + RMER30 DNA MER1_type 133 201 -1 1 955 603 62 0 0 chr3 48506165 48506245 -111093538 + (CA)n Simple_repeat Simple_repeat 2 81 0 1 955 260 87 43 0 chr3 48506514 48506560 -111093223 - RMER1B Other Other -4 1062 1015 1 955 1053 39 0 0 chr3 48506570 48506700 -111093083 + (CAAAC)n Simple_repeat Simple_repeat 5 134 0 1 955 2801 252 106 8 chr3 48506700 48507465 -111092318 - RMER1B Other Other -148 918 79 1 955 2251 215 59 62 chr3 48508993 48509607 -111090176 - RLTR18 LTR ERVK -2 614 3 1 955 551 207 72 46 chr3 48510064 48510170 -111089613 + ORR1D1 LTR MaLR 1 115 -259 1 955 2334 117 20 3 chr3 48510170 48510521 -111089262 + IAPEY2_LTR LTR ERVK 1 357 0 1 955 551 218 72 47 chr3 48510521 48510573 -111089210 + ORR1D1 LTR MaLR 116 163 -215 1 955 861 10 0 0 chr3 48510573 48510671 -111089112 + (TC)n Simple_repeat Simple_repeat 1 98 0 2 955 424 288 115 32 chr3 48510671 48510750 -111089033 + ORR1D1 LTR MaLR 164 186 -192 1 955 1704 68 0 9 chr3 48510750 48510974 -111088809 + L1_Mus1 LINE L1 6346 6567 0 2 955 241 288 116 31 chr3 48510974 48511025 -111088758 + ORR1D1 LTR MaLR 331 384 0 1 955 2092 99 3 7 chr3 48511301 48511606 -111088177 - L1_Mus2 LINE L1 0 6566 6263 2 955 323 297 77 77 chr3 48511877 48512045 -111087738 - MLT1A LTR MaLR -206 168 1 2 955 327 113 0 0 chr3 48512046 48512108 -111087675 + (TC)n Simple_repeat Simple_repeat 1 62 0 2 955 546 29 0 0 chr3 48512108 48512176 -111087607 + (TG)n Simple_repeat Simple_repeat 1 68 0 2 955 188 206 38 88 chr3 48512328 48512408 -111087375 - L3b LINE CR1 -327 155 80 2 955 403 255 30 0 chr3 48513540 48513650 -111086133 + B1_Mur1 SINE Alu 15 128 -21 2 955 260 365 0 42 chr3 48513650 48513770 -111086013 - RSINE1 SINE B4 -48 117 3 2 955 283 210 0 16 chr3 48515325 48515388 -111084395 - MLT1E3 LTR MaLR -42 582 521 2 955 276 267 34 25 chr3 48515554 48515673 -111084110 + CT-rich Low_complexity Low_complexity 2 121 0 3 955 252 260 48 16 chr3 48515863 48515988 -111083795 + (TCTCTG)n Simple_repeat Simple_repeat 3 131 0 3 955 226 211 0 0 chr3 48516022 48516074 -111083709 - L1_Rod LINE L1 -11 5836 5785 3 955 252 233 0 48 chr3 48516456 48516519 -111083264 - MLT1E3 LTR MaLR -594 60 1 2 955 186 103 0 0 chr3 48516899 48516928 -111082855 + (TATATG)n Simple_repeat Simple_repeat 4 32 0 3 955 234 62 0 0 chr3 48518572 48518604 -111081179 + (TCTG)n Simple_repeat Simple_repeat 2 33 0 3 955 837 62 0 0 chr3 48518723 48518835 -111080948 + (GGAA)n Simple_repeat Simple_repeat 1 112 0 3 955 292 247 108 0 chr3 48519667 48519760 -111080023 + MIRc SINE MIR 135 237 -31 3 955 4368 238 69 27 chr3 48521285 48522529 -111077254 - Lx9 LINE L1 -2 7642 6347 3 955 258 231 6 0 chr3 48522843 48522925 -111076858 - MLT1A0 LTR MaLR -72 336 254 3 955 681 45 0 0 chr3 48522948 48523037 -111076746 + (CA)n Simple_repeat Simple_repeat 2 90 0 3 955 729 63 0 0 chr3 48523171 48523266 -111076517 + (TTTC)n Simple_repeat Simple_repeat 2 96 0 4 955 309 290 107 18 chr3 48523494 48523788 -111075995 - Lx7 LINE L1 -365 5938 5547 4 955 590 281 35 15 chr3 48524216 48524415 -111075368 - B3 SINE B2 -11 205 3 4 955 1857 158 13 0 chr3 48524415 48524718 -111075065 + RMER13B LTR ERVK 1 307 -601 4 955 464 48 16 0 chr3 48525657 48525720 -111074063 + (TAGA)n Simple_repeat Simple_repeat 3 66 0 4 955 440 238 4 0 chr3 48527721 48527813 -111071970 - PB1D10 SINE Alu -16 101 10 4 955 641 308 142 18 chr3 48528542 48528823 -111070960 + MTEa LTR MaLR 64 379 0 4 955 645 264 102 35 chr3 48528866 48529180 -111070603 - Charlie6 DNA MER1_type -285 3215 2881 4 955 299 335 30 30 chr3 48529581 48529750 -111070033 - Charlie6 DNA MER1_type -1796 1704 1536 4 955 187 289 51 131 chr3 48531152 48531327 -111068456 - L2c LINE L2 0 3387 3227 4 955 189 74 0 0 chr3 48531466 48531493 -111068290 + (TTG)n Simple_repeat Simple_repeat 2 28 0 4 955 966 41 0 0 chr3 48532521 48532642 -111067141 + B1_Mm SINE Alu 2 122 -25 5 955 23 0 0 0 chr3 48533428 48533451 -111066332 + AT_rich Low_complexity Low_complexity 1 23 0 5 955 21 36 0 0 chr3 48534413 48534441 -111065342 + AT_rich Low_complexity Low_complexity 1 28 0 5 955 28 0 0 0 chr3 48534488 48534516 -111065267 + AT_rich Low_complexity Low_complexity 1 28 0 5 955 198 0 0 0 chr3 48535137 48535159 -111064624 + (A)n Simple_repeat Simple_repeat 1 22 0 5 955 5289 150 61 11 chr3 48535163 48536965 -111062818 + Lx4A LINE L1 5142 7055 -3 5 955 2773 44 2 119 chr3 48537659 48538096 -111061687 - RLTR10 LTR ERVK -4 386 1 5 955 8658 26 0 1 chr3 48538098 48539094 -111060689 - RLTR10-int LTR ERVK -3 1984 990 5 955 301 256 62 39 chr3 48539176 48539306 -111060477 - RLTR10-int LTR ERVK -5987 1594 1462 5 955 8000 44 1 2 chr3 48539370 48540329 -111059454 - RLTR10-int LTR ERVK -989 998 41 5 955 2786 42 2 119 chr3 48540345 48540782 -111059001 - RLTR10 LTR ERVK -4 386 1 5 955 1956 164 37 74 chr3 48540967 48541374 -111058409 - ORR1B1 LTR MaLR -2 392 1 5 955 22 56 0 0 chr3 48541502 48541538 -111058245 + AT_rich Low_complexity Low_complexity 1 36 0 5 955 668 271 39 50 chr3 48541598 48541883 -111057900 + MTEb LTR MaLR 66 375 -4 6 955 4724 71 30 8 chr3 48542253 48542890 -111056893 + L1Md_F2 LINE L1 5920 6570 -12 6 955 220 167 49 16 chr3 48543075 48543136 -111056647 + (TATAA)n Simple_repeat Simple_repeat 1 63 0 6 955 834 222 15 36 chr3 48543327 48543456 -111056327 + ORR1C2 LTR MaLR 3 132 -252 6 955 3388 35 2 0 chr3 48543456 48543851 -111055932 + MTA_Mm LTR MaLR 1 396 0 6 955 834 243 35 72 chr3 48543851 48543957 -111055826 + ORR1C2 LTR MaLR 113 223 -144 6 955 368 169 13 0 chr3 48543968 48544045 -111055738 + CT-rich Low_complexity Low_complexity 3 80 0 6 955 683 221 69 37 chr3 48544045 48544193 -111055590 + ORR1C2 LTR MaLR 174 324 -60 6 955 3836 122 35 2 chr3 48544193 48544802 -111054981 - Lx LINE L1 0 6654 6026 6 955 683 221 69 37 chr3 48544802 48544841 -111054942 + ORR1C2 LTR MaLR 325 365 -19 6 955 29985 125 48 11 chr3 48544935 48551491 -111048292 - Lx3_Mus LINE L1 -1 7008 211 6 955 486 0 0 0 chr3 48552084 48552138 -111047645 + (GA)n Simple_repeat Simple_repeat 1 54 0 6 955 197 348 96 30 chr3 48553219 48553385 -111046398 + L2a LINE L2 2786 2962 -457 6 955 221 399 54 64 chr3 48553481 48553776 -111046007 + L2a LINE L2 3083 3374 -52 6 955 1072 253 32 54 chr3 48555572 48555885 -111043898 + RMER1C Other Other 734 1039 -303 7 955 2462 75 0 0 chr3 48555899 48556217 -111043566 - L1_Mus2 LINE L1 -1 6565 6248 7 955 1430 82 0 0 chr3 48556217 48556401 -111043382 + L1_Mus2 LINE L1 6062 6245 -321 7 955 730 301 12 49 chr3 48556397 48556594 -111043189 + RMER1C Other Other 1027 1219 -123 7 955 198 0 0 0 chr3 48556594 48556616 -111043167 + (GTTTG)n Simple_repeat Simple_repeat 2 23 0 7 955 730 301 12 49 chr3 48556616 48556746 -111043037 + RMER1C Other Other 1220 1342 0 7 955 4327 90 20 2 chr3 48557556 48558157 -111041626 + L1_Mus3 LINE L1 6015 6626 -12 7 955 510 17 0 0 chr3 48558159 48558218 -111041565 + (CA)n Simple_repeat Simple_repeat 2 60 0 7 955 324 330 38 19 chr3 48558613 48558718 -111041065 - PB1D10 SINE Alu -2 115 9 7 955 38 22 0 0 chr3 48559401 48559446 -111040337 + AT_rich Low_complexity Low_complexity 1 45 0 7 955 201 333 16 70 chr3 48560002 48560131 -111039652 + MIRb SINE MIR 52 173 -95 7 955 664 336 29 0 chr3 48560570 48560778 -111039005 + ID_B1 SINE B4 9 222 -2 7 955 930 316 123 43 chr3 48561545 48562097 -111037686 - MER77 LTR ERVL -9 598 3 7 955 1776 183 0 17 chr3 48562157 48562502 -111037281 + Lx2 LINE L1 6659 6997 0 8 955 22 35 0 0 chr3 48563273 48563302 -111036481 + AT_rich Low_complexity Low_complexity 1 29 0 8 955 385 373 104 48 chr3 48563409 48563677 -111036106 - B4A SINE B4 -8 284 2 8 955 25 31 0 0 chr3 48563959 48563991 -111035792 + AT_rich Low_complexity Low_complexity 1 32 0 8 955 1003 95 0 0 chr3 48564836 48564983 -111034800 + L1_Mus2 LINE L1 6420 6566 0 8 955 328 298 11 0 chr3 48566088 48566182 -111033601 + MLT1H-int LTR MaLR 356 450 -959 8 955 2790 75 0 0 chr3 48567104 48567465 -111032318 + L1Md_F2 LINE L1 5225 5585 -298 8 955 7445 69 9 5 chr3 48567466 48568446 -111031337 + L1Md_F2 LINE L1 5587 6570 -12 8 955 661 140 257 7 chr3 48568639 48568783 -111031000 - URR1A DNA MER1_type 0 226 47 8 955 26 0 0 0 chr3 48569412 48569438 -111030345 + AT_rich Low_complexity Low_complexity 1 26 0 8 955 858 92 31 0 chr3 48569830 48569993 -111029790 + (TCTG)n Simple_repeat Simple_repeat 1 168 0 8 955 529 321 61 12 chr3 48569995 48570159 -111029624 - B3A SINE B2 -26 172 1 9 955 374 281 40 32 chr3 48570159 48570282 -111029501 - MLT1D LTR MaLR -381 124 1 9 955 348 360 57 35 chr3 48570479 48570620 -111029163 + RSINE1 SINE B4 18 161 -4 9 955 768 296 193 31 chr3 48570841 48571381 -111028402 - Lx8 LINE L1 -5 7468 6842 9 955 232 97 15 75 chr3 48571649 48571716 -111028067 + (TTATA)n Simple_repeat Simple_repeat 5 67 0 9 955 6143 63 5 25 chr3 48571765 48572592 -111027191 - L1_Mus2 LINE L1 0 6566 5757 9 955 1372 244 50 3 chr3 48572615 48572819 -111026964 - ORR1D1 LTR MaLR 0 374 166 9 955 1277 68 11 0 chr3 48572819 48572995 -111026788 + (GGGAGA)n Simple_repeat Simple_repeat 3 180 0 9 955 1372 244 50 3 chr3 48572995 48573147 -111026636 - ORR1D1 LTR MaLR -209 165 1 9 955 208 77 25 25 chr3 48574504 48574544 -111025239 + (CATATA)n Simple_repeat Simple_repeat 2 41 0 9 955 459 298 126 35 chr3 48574638 48574892 -111024891 - B4A SINE B4 -15 277 1 9 955 471 154 0 57 chr3 48575337 48575461 -111024322 - L1Md_F2 LINE L1 0 6582 6466 1 955 667 58 12 0 chr3 48575461 48575547 -111024236 + L1_Mus2 LINE L1 6344 6430 -136 1 955 243 0 0 0 chr3 48575584 48575611 -111024172 + (CAAAA)n Simple_repeat Simple_repeat 3 29 0 1 955 719 321 9 14 chr3 48576040 48576255 -111023528 - B3 SINE B2 0 216 3 1 955 24 0 0 0 chr3 48576807 48576831 -111022952 + AT_rich Low_complexity Low_complexity 1 24 0 1 955 288 0 0 0 chr3 48576831 48576863 -111022920 + (TTA)n Simple_repeat Simple_repeat 3 34 0 1 955 26 30 0 0 chr3 48578063 48578096 -111021687 + AT_rich Low_complexity Low_complexity 1 33 0 1 955 417 295 47 39 chr3 48578377 48578504 -111021279 - B1_Mur1 SINE Alu -21 128 1 1 955 432 0 0 0 chr3 48578932 48578980 -111020803 + (ATTG)n Simple_repeat Simple_repeat 1 48 0 1 955 956 155 0 0 chr3 48578980 48579135 -111020648 - B2_Mm2 SINE B2 -37 158 4 1 955 5100 86 0 28 chr3 48579475 48580185 -111019598 + L1_Mus2 LINE L1 5877 6566 0 1 955 3515 136 54 2 chr3 48580287 48580860 -111018923 + Lx2 LINE L1 5965 6567 -430 1 955 840 169 5 42 chr3 48580860 48580924 -111018859 + Lx2 LINE L1 6817 6877 -123 1 955 3193 53 0 8 chr3 48580924 48581320 -111018463 - MTA_Mm LTR MaLR 0 396 4 1 955 840 169 5 42 chr3 48581320 48581446 -111018337 + Lx2 LINE L1 6878 6999 -1 1 955 2660 187 33 5 chr3 48581472 48582113 -111017670 + Lx5 LINE L1 5539 6202 -848 1 955 4084 102 3 7 chr3 48582113 48582695 -111017088 + L1_Mus3 LINE L1 6057 6636 -2 1 955 3146 255 64 14 chr3 48582744 48583724 -111016059 + Lx5 LINE L1 6022 7050 0 1 955 28 48 0 0 chr3 48584261 48584303 -111015480 + AT_rich Low_complexity Low_complexity 1 42 0 1 955 1108 272 91 34 chr3 48586500 48586907 -111012876 - Lx6 LINE L1 -1 7459 7030 1 955 674 229 47 87 chr3 48586916 48587245 -111012538 - L1_Mur3 LINE L1 -6553 1159 863 1 955 398 154 9 46 chr3 48588479 48588588 -111011195 + CT-rich Low_complexity Low_complexity 6 110 0 1 955 242 414 14 38 chr3 48589136 48589347 -111010436 + LTR85c LTR Gypsy? 408 613 -210 1 955 437 310 44 33 chr3 48589425 48589605 -111010178 - L1MA4 LINE L1 -1078 6395 6214 1 955 626 306 34 54 chr3 48589645 48589849 -111009934 - B3A SINE B2 -13 203 4 1 955 845 302 126 12 chr3 48590109 48590528 -111009255 - L1MA4 LINE L1 -1542 5931 5448 1 955 824 318 11 7 chr3 48590547 48590826 -111008957 + Lx8 LINE L1 6586 6865 -608 1 955 25 51 0 0 chr3 48592142 48592181 -111007602 + AT_rich Low_complexity Low_complexity 1 39 0 1 955 1155 68 7 0 chr3 48592227 48592373 -111007410 + B1_Mus1 SINE Alu 2 148 0 1 955 195 129 0 0 chr3 48592776 48592807 -111006976 + (T)n Simple_repeat Simple_repeat 1 31 0 1 955 797 75 0 0 chr3 48592807 48592913 -111006870 - B1_Mm SINE Alu -41 106 1 1 955 386 282 17 33 chr3 48593407 48593587 -111006196 + CT-rich Low_complexity Low_complexity 2 178 0 1 955 369 0 0 0 chr3 48593605 48593646 -111006137 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 955 194 62 31 0 chr3 48593890 48593922 -111005861 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 1 955 304 291 67 79 chr3 48594616 48594870 -111004913 - RLTR15 LTR ERVK -37 322 72 1 955 301 265 23 31 chr3 48594914 48595042 -111004741 - RLTR12B LTR ERVK -404 124 1 1 955 23 33 0 0 chr3 48595320 48595350 -111004433 + AT_rich Low_complexity Low_complexity 1 30 0 1 955 761 355 38 28 chr3 48595405 48595770 -111004013 + Lx8 LINE L1 6575 6951 -522 1 955 252 0 0 0 chr3 48595770 48595798 -111003985 + (CA)n Simple_repeat Simple_repeat 2 29 0 1 955 585 0 0 0 chr3 48595798 48595862 -111003921 + (TC)n Simple_repeat Simple_repeat 1 65 0 1 955 761 357 47 31 chr3 48595862 48595984 -111003799 + Lx8 LINE L1 6941 7074 -622 1 955 503 328 22 6 chr3 48596067 48596245 -111003538 + Lx8 LINE L1 7185 7365 -108 1 955 574 171 8 31 chr3 48596603 48596730 -111003053 + Lx2 LINE L1 6874 6997 0 1 955 755 241 34 11 chr3 48596926 48597102 -111002681 - RLTR17 LTR ERVK -73 619 440 1 955 4897 176 42 45 chr3 48597104 48598245 -111001538 + RMER3D-int LTR ERVK 1705 2842 0 1 955 1054 186 5 44 chr3 48598245 48598448 -111001335 + RLTR17 LTR ERVK 1 195 -497 1 955 14290 46 8 1 chr3 48598451 48600232 -110999551 + L1Md_F3 LINE L1 3794 5586 -297 1 955 7938 38 14 0 chr3 48600232 48601202 -110998581 + L1Md_F3 LINE L1 5587 6570 -14 1 955 1835 253 73 14 chr3 48601202 48601684 -110998099 + RLTR17 LTR ERVK 183 692 0 1 955 52 50 0 0 chr3 48602057 48602137 -110997646 + AT_rich Low_complexity Low_complexity 1 80 0 1 955 213 219 89 89 chr3 48602579 48602669 -110997114 - L2a LINE L2 -4 3422 3333 1 955 185 221 0 14 chr3 48603268 48603337 -110996446 + (CA)n Simple_repeat Simple_repeat 1 68 0 1 955 749 284 5 14 chr3 48603905 48604116 -110995667 + B3 SINE B2 1 209 -7 1 955 7114 111 3 9 chr3 48604301 48605423 -110994360 + L1_Mus3 LINE L1 5519 6637 -1 1 955 2653 122 5 0 chr3 48606043 48606451 -110993332 + Lx2 LINE L1 6588 6997 0 1 955 3298 33 5 8 chr3 48606871 48607268 -110992515 - MTA_Mm LTR MaLR 0 396 1 1 955 282 56 0 0 chr3 48608765 48608801 -110990982 + (CA)n Simple_repeat Simple_repeat 1 36 0 1 955 7431 184 15 9 chr3 48609753 48612185 -110987598 + Lx2B LINE L1 4562 6996 -4 1 955 554 255 99 23 chr3 48613411 48613632 -110986151 - MLT1C LTR MaLR -47 420 183 1 955 1603 48 19 0 chr3 48613632 48613840 -110985943 + Lx LINE L1 5832 6043 -611 1 955 2336 235 59 43 chr3 48613854 48614464 -110985319 + RLTR26 LTR ERVK 23 642 0 1 955 3989 112 13 11 chr3 48614466 48615080 -110984703 + Lx LINE L1 6040 6654 0 1 955 647 325 117 37 chr3 48615509 48615972 -110983811 + RMER5 LTR ERV1 15 514 -20 1 955 268 330 82 0 chr3 48617223 48617398 -110982385 - MIRb SINE MIR -36 232 27 1 955 953 123 7 0 chr3 48617431 48617569 -110982214 - L1_Mus2 LINE L1 -456 6110 5972 1 955 3500 87 4 4 chr3 48617569 48618043 -110981740 + L1_Mus2 LINE L1 6092 6565 -1 1 955 676 315 0 18 chr3 48618110 48618330 -110981453 - B3 SINE B2 0 216 1 1 955 1012 124 0 0 chr3 48618400 48618545 -110981238 + B1_Mus1 SINE Alu 1 145 -3 1 955 193 146 20 20 chr3 48618546 48618595 -110981188 + (TAA)n Simple_repeat Simple_repeat 1 49 0 1 955 1181 42 0 0 chr3 48619022 48619166 -110980617 - B1_Mus2 SINE Alu 0 147 4 1 955 1828 43 13 0 chr3 48619178 48619410 -110980373 + L1Md_F2 LINE L1 6348 6582 0 1 955 213 121 0 0 chr3 48619482 48619515 -110980268 + (A)n Simple_repeat Simple_repeat 1 33 0 1 955 222 91 0 0 chr3 48619664 48619697 -110980086 + (TG)n Simple_repeat Simple_repeat 2 34 0 1 955 1173 54 0 0 chr3 48619957 48620104 -110979679 + B1_Mus2 SINE Alu 1 147 0 1 955 216 0 0 0 chr3 48620110 48620134 -110979649 + (TAA)n Simple_repeat Simple_repeat 2 25 0 1 955 258 32 0 0 chr3 48621018 48621049 -110978734 + (TG)n Simple_repeat Simple_repeat 2 32 0 1 955 1396 265 113 69 chr3 48621326 48621890 -110977893 - RLTR18 LTR ERVK -3 613 25 1 955 234 329 28 129 chr3 48622233 48622488 -110977295 - RLTR21 LTR ERVK -312 1260 1032 1 955 194 105 0 26 chr3 48622868 48622907 -110976876 + (TAA)n Simple_repeat Simple_repeat 3 40 0 1 955 360 343 131 30 chr3 48623923 48624251 -110975532 + Tigger7 DNA MER2_type 17 377 -2114 1 955 332 289 165 52 chr3 48624247 48624477 -110975306 + Tigger7 DNA MER2_type 2237 2491 0 1 955 284 119 0 0 chr3 48624682 48624724 -110975059 + B1_Mus1 SINE Alu 2 43 -105 1 955 497 182 13 33 chr3 48624801 48624897 -110974886 + B1_Mur4 SINE Alu 18 140 -10 1 955 228 86 0 0 chr3 48624897 48624932 -110974851 + (TAA)n Simple_repeat Simple_repeat 2 36 0 1 955 186 150 0 0 chr3 48625612 48625652 -110974131 + (T)n Simple_repeat Simple_repeat 1 40 0 1 955 265 294 167 96 chr3 48625655 48625800 -110973983 - MER57F LTR ERV1 0 436 305 1 955 540 45 0 0 chr3 48625805 48625872 -110973911 + (TCTA)n Simple_repeat Simple_repeat 1 67 0 1 955 700 214 6 28 chr3 48625872 48626044 -110973739 - Lx4B LINE L1 -15 7043 6875 1 955 265 294 167 96 chr3 48626044 48626282 -110973501 - MER57F LTR ERV1 -132 304 26 1 955 569 156 0 40 chr3 48626339 48626439 -110973344 + B1_Mur4 SINE Alu 53 148 -2 1 955 255 114 0 0 chr3 48626440 48626484 -110973299 + (CAAA)n Simple_repeat Simple_repeat 1 44 0 1 955 570 114 0 0 chr3 48626488 48626576 -110973207 + (GA)n Simple_repeat Simple_repeat 2 89 0 1 955 672 13 0 0 chr3 48626576 48626653 -110973130 + (GGAA)n Simple_repeat Simple_repeat 4 80 0 1 955 556 60 12 23 chr3 48626653 48626739 -110973044 + (GAAAA)n Simple_repeat Simple_repeat 4 88 0 1 955 28 48 0 0 chr3 48626821 48626863 -110972920 + AT_rich Low_complexity Low_complexity 1 42 0 1 956 644 191 6 0 chr3 48627861 48628039 -110971744 + CT-rich Low_complexity Low_complexity 2 180 0 1 956 380 313 19 75 chr3 48628158 48628317 -110971466 - B4A SINE B4 -137 155 6 1 956 1315 224 39 120 chr3 48628371 48628828 -110970955 - RLTR23 LTR ERV1 -8 422 3 1 956 239 319 14 14 chr3 48629038 48629108 -110970675 + ID4 SINE ID 11 80 -3 1 956 7242 37 6 6 chr3 48629810 48630698 -110969085 + L1Md_F2 LINE L1 5695 6582 0 1 956 21 0 0 0 chr3 48631805 48631826 -110967957 + AT_rich Low_complexity Low_complexity 1 21 0 1 956 4013 81 24 17 chr3 48631849 48632426 -110967357 - L1Md_F2 LINE L1 0 6582 6002 1 956 2958 198 44 3 chr3 48632428 48633015 -110966768 - Lx3B LINE L1 -10 6963 6353 1 956 3307 28 23 0 chr3 48633556 48633943 -110965840 + MTA_Mm LTR MaLR 1 396 0 1 956 234 0 0 0 chr3 48634132 48634158 -110965625 + (T)n Simple_repeat Simple_repeat 1 26 0 1 956 3156 169 12 0 chr3 48634228 48634786 -110964997 - Lx2 LINE L1 0 6997 6433 1 956 342 313 185 22 chr3 48634805 48635168 -110964615 - L1MD LINE L1 -2575 3571 3150 1 956 317 305 73 5 chr3 48635170 48635460 -110964323 - L1M4b LINE L1 -3161 3845 3537 1 956 388 193 55 12 chr3 48635513 48635676 -110964107 + (TA)n Simple_repeat Simple_repeat 2 171 0 1 956 2102 171 32 5 chr3 48635798 48636174 -110963609 - ORR1B1 LTR MaLR -8 386 1 1 956 337 344 73 28 chr3 48636318 48636566 -110963217 - L1M4b LINE L1 -5170 2164 1906 1 956 21 0 0 0 chr3 48636861 48636882 -110962901 + AT_rich Low_complexity Low_complexity 1 21 0 1 956 570 325 56 53 chr3 48639110 48639432 -110960351 - MTE2a LTR MaLR 0 379 57 2 956 3247 216 45 27 chr3 48640004 48640776 -110959007 - Lx9 LINE L1 -6 7638 6853 2 956 21 0 0 0 chr3 48640944 48640965 -110958818 + AT_rich Low_complexity Low_complexity 1 21 0 2 956 858 99 0 0 chr3 48641392 48641523 -110958260 + (TTCC)n Simple_repeat Simple_repeat 3 133 0 2 956 185 159 0 22 chr3 48642973 48643018 -110956765 + GA-rich Low_complexity Low_complexity 3 46 0 2 956 2306 166 64 108 chr3 48643774 48643865 -110955918 + RLTR12A LTR ERVK 42 131 -437 2 956 1116 68 7 0 chr3 48643865 48644011 -110955772 + B1_Mus1 SINE Alu 2 148 0 2 956 2306 166 64 108 chr3 48644011 48644466 -110955317 + RLTR12A LTR ERVK 132 564 -4 2 956 233 263 17 17 chr3 48645564 48645622 -110954161 + ID4_ SINE ID 12 69 -14 2 956 248 70 23 0 chr3 48645674 48645717 -110954066 + (TG)n Simple_repeat Simple_repeat 1 44 0 2 956 316 131 62 62 chr3 48645764 48645829 -110953954 - HAL1-3A_ME LINE L1 -846 2012 1948 2 956 828 296 36 69 chr3 48647263 48647597 -110952186 + MTE2a LTR MaLR 57 379 0 2 956 438 143 24 12 chr3 48647727 48647812 -110951971 + ORR1C2 LTR MaLR 1 86 -288 2 956 270 226 0 0 chr3 48647850 48647956 -110951827 + CT-rich Low_complexity Low_complexity 2 107 0 2 956 565 171 9 19 chr3 48647978 48648085 -110951698 + MT2A LTR ERVL 107 212 -321 2 956 695 207 127 6 chr3 48648087 48648289 -110951494 + ORR1C2 LTR MaLR 96 380 -4 2 956 261 139 0 0 chr3 48648964 48649007 -110950776 + (GGAGAA)n Simple_repeat Simple_repeat 6 48 0 2 956 21 0 0 0 chr3 48650662 48650683 -110949100 + AT_rich Low_complexity Low_complexity 1 21 0 2 956 298 321 14 49 chr3 48652047 48652191 -110947592 + Lx7 LINE L1 5604 5742 -1316 2 956 549 0 0 0 chr3 48653482 48653543 -110946240 + (TG)n Simple_repeat Simple_repeat 2 62 0 2 956 1032 62 0 0 chr3 48653621 48653766 -110946017 + (GA)n Simple_repeat Simple_repeat 1 145 0 2 956 189 0 0 0 chr3 48655234 48655255 -110944528 + (GA)n Simple_repeat Simple_repeat 2 22 0 2 956 183 42 0 0 chr3 48656483 48656507 -110943276 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2 956 13597 7 0 0 chr3 48657579 48659110 -110940673 + L1Md_A LINE L1 4056 5586 -297 2 956 8896 7 1 0 chr3 48659110 48660105 -110939678 + L1Md_A LINE L1 5587 6582 0 2 956 180 0 0 0 chr3 48660136 48660156 -110939627 + (A)n Simple_repeat Simple_repeat 1 20 0 2 956 312 301 88 9 chr3 48660368 48660482 -110939301 - MTD LTR MaLR -14 405 283 2 956 371 343 39 61 chr3 48660508 48660688 -110939095 - B4 SINE B4 -115 177 2 2 956 513 329 50 6 chr3 48660709 48661073 -110938710 - L1MB1 LINE L1 -4 6164 5785 2 956 1423 65 0 0 chr3 48661074 48661260 -110938523 + MTB LTR MaLR 1 186 -214 2 956 8108 167 16 22 chr3 48661260 48662320 -110937463 + Lx LINE L1 4375 5445 -438 2 956 1589 123 44 15 chr3 48662320 48662593 -110937190 + L1_Mus4 LINE L1 6354 6634 -2 2 956 8108 123 17 6 chr3 48662593 48663802 -110935981 + Lx LINE L1 5446 6650 -4 2 956 447 68 0 0 chr3 48663958 48664017 -110935766 + (GGGA)n Simple_repeat Simple_repeat 4 62 0 2 956 1068 52 0 0 chr3 48664017 48664152 -110935631 + (GAAA)n Simple_repeat Simple_repeat 1 135 0 2 956 1429 99 40 0 chr3 48664152 48664353 -110935430 + MTB LTR MaLR 192 400 0 2 956 214 50 24 24 chr3 48664685 48664726 -110935057 + (TTTTTG)n Simple_repeat Simple_repeat 2 42 0 2 956 677 93 120 9 chr3 48664741 48664849 -110934934 - B1_Mus1 SINE Alu 0 148 29 2 956 229 333 64 77 chr3 48665086 48665476 -110934307 + L1M3 LINE L1 4539 4923 -1217 2 956 657 284 57 147 chr3 48665515 48665849 -110933934 - ORR1D1 LTR MaLR -9 365 62 2 956 318 115 0 0 chr3 48666001 48666053 -110933730 + (TA)n Simple_repeat Simple_repeat 1 52 0 2 956 232 342 189 0 chr3 48666904 48667015 -110932768 - B1F2 SINE Alu -9 140 9 2 956 25 0 0 0 chr3 48667136 48667161 -110932622 + AT_rich Low_complexity Low_complexity 1 25 0 2 956 991 137 36 0 chr3 48667261 48667429 -110932354 + Lx4A LINE L1 6434 6607 -451 2 956 5672 175 36 16 chr3 48667457 48668553 -110931230 - Lx2B LINE L1 -10 6990 5873 2 956 2192 200 13 13 chr3 48668552 48668918 -110930865 + Lx4A LINE L1 6599 6968 -90 2 956 2703 21 0 66 chr3 48668918 48669268 -110930515 - IAPLTR2b LTR ERVK 0 327 1 2 956 2192 200 13 13 chr3 48669268 48669356 -110930427 + Lx4A LINE L1 6969 7053 -5 2 956 729 300 155 70 chr3 48670353 48671556 -110928227 + L1MD LINE L1 2400 3705 -2441 2 956 2589 155 38 89 chr3 48671985 48672601 -110927182 + L1_Mus1 LINE L1 6057 6997 0 2 956 538 349 83 25 chr3 48673464 48673705 -110926078 + L4 LINE RTE 1161 1415 -614 2 956 26 64 0 0 chr3 48674197 48674244 -110925539 + AT_rich Low_complexity Low_complexity 1 47 0 2 956 1052 103 7 0 chr3 48674366 48674512 -110925271 - B1_Mm SINE Alu 0 147 1 2 956 24 91 0 0 chr3 48674570 48674636 -110925147 + AT_rich Low_complexity Low_complexity 1 66 0 2 956 23 33 0 0 chr3 48674748 48674778 -110925005 + AT_rich Low_complexity Low_complexity 1 30 0 2 956 240 304 92 35 chr3 48674838 48675012 -110924771 - L1MA5 LINE L1 -304 5996 5813 2 956 404 87 29 0 chr3 48675043 48675112 -110924671 + (CATA)n Simple_repeat Simple_repeat 2 72 0 2 956 25 31 0 0 chr3 48675187 48675219 -110924564 + AT_rich Low_complexity Low_complexity 1 32 0 2 956 311 293 24 16 chr3 48675222 48675347 -110924436 - L1MD LINE L1 -1980 4166 4041 2 956 234 153 97 0 chr3 48675407 48675479 -110924304 - L1Md_T LINE L1 0 6582 6504 2 956 30357 83 45 1 chr3 48675478 48680930 -110918853 - L1Md_F2 LINE L1 -490 6092 386 2 956 5236 84 5 7 chr3 48680926 48681689 -110918094 - L1_Mm LINE L1 -2126 3757 2996 2 956 6815 91 24 6 chr3 48681697 48682662 -110917121 + L1Md_F2 LINE L1 5589 6570 -12 2 956 1377 122 9 1 chr3 48682662 48682883 -110916900 - L1_Mm LINE L1 -820 5063 4859 2 956 26 0 0 0 chr3 48685383 48685409 -110914374 + AT_rich Low_complexity Low_complexity 1 26 0 2 956 3184 138 4 0 chr3 48686631 48687122 -110912661 - Lx3B LINE L1 -379 6594 6102 2 956 24 0 0 0 chr3 48687265 48687289 -110912494 + AT_rich Low_complexity Low_complexity 1 24 0 2 956 261 0 0 0 chr3 48687398 48687427 -110912356 + (CA)n Simple_repeat Simple_repeat 2 30 0 2 956 456 314 132 45 chr3 48687439 48687992 -110911791 - L1MC3 LINE L1 -206 7579 6979 2 956 689 147 15 0 chr3 48688693 48688829 -110910954 + (TATG)n Simple_repeat Simple_repeat 4 141 0 2 956 26 30 0 0 chr3 48688883 48688916 -110910867 + AT_rich Low_complexity Low_complexity 1 33 0 2 956 333 47 0 0 chr3 48689202 48689245 -110910538 + (TTTTC)n Simple_repeat Simple_repeat 2 44 0 2 956 1119 124 0 0 chr3 48689255 48689432 -110910351 + (TTCCC)n Simple_repeat Simple_repeat 4 180 0 2 956 6495 66 23 8 chr3 48689489 48690356 -110909427 - L1Md_F2 LINE L1 0 6582 5703 2 956 4999 73 1 3 chr3 48690356 48691011 -110908772 + L1Md_F2 LINE L1 5053 5706 -177 2 956 188 346 25 13 chr3 48691313 48691392 -110908391 + L2b LINE L2 3294 3373 -2 2 956 714 286 77 37 chr3 48692251 48692523 -110907260 + B4A SINE B4 10 292 0 2 956 577 206 101 14 chr3 48693182 48693320 -110906463 - B1_Mur4 SINE Alu 0 150 1 2 956 290 261 0 14 chr3 48694226 48694296 -110905487 + ID4 SINE ID 3 71 -12 2 956 23 0 0 0 chr3 48694971 48694994 -110904789 + AT_rich Low_complexity Low_complexity 1 23 0 2 956 357 141 0 0 chr3 48696278 48696342 -110903441 - L1Md_F2 LINE L1 -6 6576 6513 2 956 717 110 0 0 chr3 48697614 48697732 -110902051 + (TA)n Simple_repeat Simple_repeat 2 119 0 2 956 3977 77 0 6 chr3 48697797 48698322 -110901461 + L1Md_F2 LINE L1 6048 6569 -13 2 956 567 325 7 0 chr3 48698760 48698914 -110900869 + RSINE1 SINE B4 11 165 0 2 956 429 20 0 0 chr3 48699233 48699283 -110900500 + (TTA)n Simple_repeat Simple_repeat 2 51 0 2 956 2581 30 3 0 chr3 48699466 48699771 -110900012 - L1Md_F2 LINE L1 -618 5964 5659 2 956 2663 37 0 47 chr3 48699771 48700114 -110899669 + IAPLTR2b LTR ERVK 1 327 0 2 956 3480 84 19 20 chr3 48700137 48700912 -110898871 + IAPEz-int LTR ERVK 10 662 -5819 2 956 2724 58 0 3 chr3 48700912 48701255 -110898528 + IAPEz-int LTR ERVK 1359 1700 -4781 2 956 6044 59 36 17 chr3 48701248 48702062 -110897721 + IAPEz-int LTR ERVK 5651 6479 -2 2 956 2219 46 19 55 chr3 48702064 48702389 -110897394 + IAPLTR2b LTR ERVK 1 313 -14 2 956 1204 29 0 0 chr3 48702389 48702527 -110897256 - L1_Mm LINE L1 -253 5630 5493 2 956 4677 66 0 0 chr3 48702527 48703158 -110896625 + L1Md_F2 LINE L1 5991 6582 0 2 956 324 83 0 0 chr3 48704171 48704219 -110895564 + (CA)n Simple_repeat Simple_repeat 2 49 0 2 956 207 0 0 0 chr3 48704221 48704244 -110895539 + (GA)n Simple_repeat Simple_repeat 2 24 0 2 956 557 203 6 0 chr3 48704644 48704821 -110894962 + (CA)n Simple_repeat Simple_repeat 2 179 0 2 956 358 250 12 0 chr3 48704870 48705038 -110894745 + (CA)n Simple_repeat Simple_repeat 1 170 0 2 956 499 233 9 15 chr3 48705053 48705391 -110894392 + (CA)n Simple_repeat Simple_repeat 1 336 0 2 956 522 326 61 0 chr3 48705567 48705748 -110894035 + RMER30 DNA MER1_type 9 200 -2 2 956 1137 58 23 0 chr3 48705762 48705936 -110893847 + (TCTA)n Simple_repeat Simple_repeat 2 179 0 2 956 538 186 14 3 chr3 48705955 48706313 -110893470 + (TCTA)n Simple_repeat Simple_repeat 1 362 0 2 956 183 290 39 88 chr3 48706578 48706680 -110893103 + L2a LINE L2 3328 3424 -2 2 956 873 228 113 43 chr3 48707326 48707698 -110892085 - Lx7 LINE L1 -489 7207 6803 2 956 1995 114 40 0 chr3 48707702 48707999 -110891784 - ORR1A3 LTR MaLR 0 326 18 2 956 570 276 5 67 chr3 48708010 48708220 -110891563 - Lx6 LINE L1 -671 6789 6593 2 956 1587 207 91 77 chr3 48708234 48709160 -110890623 - L1_Mur3 LINE L1 0 5880 5072 2 956 6918 204 36 43 chr3 48709155 48710115 -110889668 - L1_Mur3 LINE L1 -1775 4105 3132 2 956 297 75 0 0 chr3 48710115 48710155 -110889628 + (TTTG)n Simple_repeat Simple_repeat 1 40 0 2 956 6918 204 36 43 chr3 48710155 48710295 -110889488 - L1_Mur3 LINE L1 -2749 3131 2995 2 956 645 14 0 0 chr3 48710295 48710369 -110889414 + (TCTA)n Simple_repeat Simple_repeat 1 74 0 2 956 6918 204 36 43 chr3 48710369 48710416 -110889367 - L1_Mur3 LINE L1 -2886 2994 2949 2 956 961 116 14 0 chr3 48710416 48710554 -110889229 + B1_Mus1 SINE Alu 1 140 -8 2 956 1353 31 0 0 chr3 48710554 48710716 -110889067 + (CAAAG)n Simple_repeat Simple_repeat 2 163 0 2 956 6918 204 36 43 chr3 48710716 48711380 -110888403 - L1_Mur3 LINE L1 -2932 2948 2306 2 956 1711 203 42 46 chr3 48711421 48711854 -110887929 - RMER6C LTR ERVK -26 664 234 2 956 834 209 47 62 chr3 48711856 48712191 -110887592 - L1_Mur3 LINE L1 -4416 1464 1123 2 956 913 279 130 0 chr3 48712192 48712522 -110887261 - L1_Mur3 LINE L1 -7292 436 64 2 956 341 378 39 0 chr3 48713682 48713809 -110885974 + RSINE1 SINE B4 3 134 -31 2 956 1103 132 20 236 chr3 48713905 48714252 -110885531 + RLTR23 LTR ERV1 1 272 -158 2 956 315 262 184 0 chr3 48714648 48714751 -110885032 - MER45A DNA Tip100 -3 175 54 2 956 837 153 76 0 chr3 48715001 48715158 -110884625 - Lx LINE L1 -159 7485 7317 3 956 421 262 9 9 chr3 48715615 48715723 -110884060 - B4A SINE B4 -2 290 183 3 956 798 176 36 46 chr3 48715763 48715959 -110883824 + B2_Mm2 SINE B2 1 194 -1 3 956 7316 124 19 6 chr3 48716179 48717460 -110882323 + Lx3B LINE L1 5459 6752 -221 3 956 3953 134 22 17 chr3 48717625 48718271 -110881512 - Lx LINE L1 -7 6647 5999 3 956 1286 175 16 0 chr3 48718271 48718517 -110881266 - L1_Mm LINE L1 -438 5445 5196 3 956 488 16 16 0 chr3 48718863 48718924 -110880859 + (CA)n Simple_repeat Simple_repeat 1 62 0 3 956 666 197 0 0 chr3 48719109 48719261 -110880522 + (TG)n Simple_repeat Simple_repeat 1 152 0 3 956 248 293 147 67 chr3 48719310 48719460 -110880323 - B4 SINE B4 -2 290 129 3 956 25 0 0 0 chr3 48719873 48719898 -110879885 + AT_rich Low_complexity Low_complexity 1 25 0 3 956 21 71 0 0 chr3 48719945 48719987 -110879796 + AT_rich Low_complexity Low_complexity 1 42 0 3 956 7567 121 3 40 chr3 48720568 48720890 -110878893 + L1_Mus3 LINE L1 4940 5257 -1381 3 956 426 173 93 50 chr3 48720890 48721072 -110878711 + RMER17C LTR ERVK 88 277 -133 3 956 7567 121 3 40 chr3 48721072 48722458 -110877325 + L1_Mus3 LINE L1 5258 6632 -6 3 956 225 167 0 53 chr3 48722624 48722700 -110877083 + (TATG)n Simple_repeat Simple_repeat 4 75 0 3 956 7350 103 27 28 chr3 48722816 48724188 -110875595 - L1_Mus3 LINE L1 -5 6633 5243 3 956 792 30 0 0 chr3 48724188 48724287 -110875496 + (TAGA)n Simple_repeat Simple_repeat 2 100 0 3 956 7350 142 21 102 chr3 48724287 48725190 -110874593 - L1_Mus3 LINE L1 -641 5242 4458 3 956 24 53 0 0 chr3 48725288 48725326 -110874457 + AT_rich Low_complexity Low_complexity 1 38 0 3 956 344 243 0 9 chr3 48725551 48725663 -110874120 + (TG)n Simple_repeat Simple_repeat 2 112 0 3 956 22 56 0 0 chr3 48725768 48725804 -110873979 + AT_rich Low_complexity Low_complexity 1 36 0 3 956 194 235 19 38 chr3 48726277 48726330 -110873453 - L4 LINE RTE -589 1440 1389 3 956 288 130 0 0 chr3 48726447 48726493 -110873290 + (CATA)n Simple_repeat Simple_repeat 2 47 0 3 956 1403 143 14 0 chr3 48726761 48726984 -110872799 - RLTR22_Mur LTR ERVK -33 1815 1590 3 956 4386 134 46 17 chr3 48727242 48728025 -110871758 - RLTR22_Mur LTR ERVK -1040 808 3 3 956 335 356 17 17 chr3 48728027 48728204 -110871579 + Lx8 LINE L1 6643 6819 -654 3 956 292 321 54 0 chr3 48728206 48728318 -110871465 + Lx8 LINE L1 7202 7319 -154 3 956 610 215 72 53 chr3 48728390 48728655 -110871128 - L1_Rod LINE L1 -900 4947 4678 3 956 289 365 89 13 chr3 48728862 48729020 -110870763 + MTD LTR MaLR 2 171 -248 3 956 294 272 0 12 chr3 48729051 48729133 -110870650 + L1Md_F LINE L1 86 166 -6353 3 956 309 111 0 0 chr3 48729697 48729742 -110870041 - RMER1C Other Other -19 1323 1279 3 956 705 298 61 13 chr3 48729740 48729911 -110869872 - RMER1C Other Other -625 717 536 3 956 2203 99 6 64 chr3 48729911 48730257 -110869526 - ORR1A2 LTR MaLR -1 326 1 3 956 705 298 61 13 chr3 48730257 48730316 -110869467 - RMER1C Other Other -807 535 476 3 956 7396 196 49 13 chr3 48730354 48732970 -110866813 - Lx5 LINE L1 0 7050 4343 3 956 2475 185 56 4 chr3 48732970 48733454 -110866329 + RLTR20B2 LTR ERVK 1 509 -51 3 956 2175 164 86 21 chr3 48733502 48733535 -110866248 - Lx5 LINE L1 -2144 3733 3705 3 956 2005 77 7 0 chr3 48733535 48733809 -110865974 - L1_Mus1 LINE L1 0 6567 6292 3 956 2175 164 86 21 chr3 48733809 48734287 -110865496 - Lx5 LINE L1 -2173 3704 3190 3 956 221 0 35 0 chr3 48734287 48734316 -110865467 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 3 956 2175 164 86 21 chr3 48734316 48734327 -110865456 - Lx5 LINE L1 -2688 3189 3177 3 956 19702 30 3 0 chr3 48734318 48737359 -110862424 - L1Md_A LINE L1 -1 6581 3532 3 956 6701 40 2 23 chr3 48737347 48738969 -110860814 - L1Md_A LINE L1 -3863 2020 440 3 956 1010 273 82 11 chr3 48738975 48739427 -110860356 + Lx6 LINE L1 788 1271 -6457 3 956 2294 216 75 154 chr3 48739428 48740757 -110859026 + Lx6 LINE L1 1194 2415 -3465 3 956 578 266 0 0 chr3 48740763 48740902 -110858881 + B1_Mus1 SINE Alu 10 148 0 3 956 247 265 0 0 chr3 48740941 48741009 -110858774 + Lx6 LINE L1 2391 2458 -3419 3 956 1014 165 86 19 chr3 48741058 48741179 -110858604 + Lx6 LINE L1 2478 2598 -3282 3 956 546 16 0 0 chr3 48741179 48741242 -110858541 + (AAATG)n Simple_repeat Simple_repeat 4 66 0 3 956 1014 165 86 19 chr3 48741242 48741330 -110858453 + Lx6 LINE L1 2599 2700 -3180 3 956 2819 197 282 6 chr3 48741323 48742136 -110857647 + Lx6 LINE L1 4762 5798 -82 3 956 1836 258 167 56 chr3 48742149 48742261 -110857522 - Lx6 LINE L1 -26 7434 7327 3 956 504 0 0 0 chr3 48742261 48742317 -110857466 + (TAAAA)n Simple_repeat Simple_repeat 3 58 0 3 956 1836 274 142 45 chr3 48742317 48743249 -110856534 - Lx6 LINE L1 -134 7326 6046 3 956 249 222 37 0 chr3 48743250 48743304 -110856479 - B3 SINE B2 -97 119 64 3 956 1583 203 52 0 chr3 48743706 48743997 -110855786 - Lx6 LINE L1 -169 5711 5406 3 956 1156 267 44 34 chr3 48743988 48744372 -110855411 + Lx6 LINE L1 5795 6182 -1278 3 956 343 286 50 33 chr3 48744449 48744630 -110855153 + RLTR10D LTR ERVK 176 359 0 3 956 486 237 22 7 chr3 48744675 48744811 -110854972 + IAP-d-int LTR ERVK 22 159 -6383 3 956 8492 275 19 30 chr3 48744813 48748131 -110851652 + IAP-d-int LTR ERVK 3148 6542 0 3 956 547 282 62 53 chr3 48748131 48748487 -110851296 + RLTR10D LTR ERVK 1 359 0 3 956 441 344 7 7 chr3 48748487 48748639 -110851144 + Lx6 LINE L1 6177 6328 -1132 3 956 189 147 0 0 chr3 48749025 48749059 -110850724 + (GA)n Simple_repeat Simple_repeat 1 34 0 3 956 22 56 0 0 chr3 48749326 48749362 -110850421 + AT_rich Low_complexity Low_complexity 1 36 0 3 956 948 71 0 108 chr3 48749375 48749532 -110850251 + B1_Mus1 SINE Alu 2 141 -7 3 956 378 0 0 0 chr3 48749534 48749576 -110850207 + (TAA)n Simple_repeat Simple_repeat 1 42 0 3 956 534 16 0 0 chr3 48750279 48750342 -110849441 + (TC)n Simple_repeat Simple_repeat 2 64 0 3 956 647 172 105 13 chr3 48750446 48750599 -110849184 - Lx3B LINE L1 -4 6969 6803 3 956 700 108 10 0 chr3 48750598 48750700 -110849083 + Lx3B LINE L1 6189 6291 -682 3 956 1577 138 0 8 chr3 48751299 48751555 -110848228 - L1_Mur1 LINE L1 -1935 3951 3698 3 956 8356 153 11 8 chr3 48751554 48753051 -110846732 + Lx2 LINE L1 5490 6996 -1 3 956 1831 228 32 5 chr3 48753094 48753504 -110846279 - MTC LTR MaLR 0 421 1 3 956 30 27 0 0 chr3 48755639 48755676 -110844107 + AT_rich Low_complexity Low_complexity 1 37 0 3 956 30 27 0 0 chr3 48755735 48755772 -110844011 + AT_rich Low_complexity Low_complexity 1 37 0 3 956 21 0 0 0 chr3 48756255 48756276 -110843507 + AT_rich Low_complexity Low_complexity 1 21 0 3 956 35 0 0 0 chr3 48756349 48756384 -110843399 + AT_rich Low_complexity Low_complexity 1 35 0 3 956 457 323 25 84 chr3 48756547 48756750 -110843033 + MTE2b LTR MaLR 1 191 -188 3 956 28 0 0 0 chr3 48758222 48758250 -110841533 + AT_rich Low_complexity Low_complexity 1 28 0 3 956 25 0 0 0 chr3 48758329 48758354 -110841429 + AT_rich Low_complexity Low_complexity 1 25 0 3 119 1336 50 0 0 chr3 48758646 48758807 -110840976 + U1 snRNA snRNA 4 164 -1 3 957 765 154 0 0 chr3 48758930 48759092 -110840691 + CT-rich Low_complexity Low_complexity 2 163 0 3 957 520 321 42 31 chr3 48759461 48759654 -110840129 + B3 SINE B2 9 203 -13 3 957 206 213 0 32 chr3 48759654 48759717 -110840066 + (CATA)n Simple_repeat Simple_repeat 3 63 0 3 957 306 0 0 0 chr3 48759717 48759751 -110840032 + (CA)n Simple_repeat Simple_repeat 1 34 0 3 957 2871 29 2 142 chr3 48761047 48761496 -110838287 - RLTR10 LTR ERVK -4 386 1 3 957 14985 26 35 70 chr3 48761498 48763514 -110836269 - RLTR10-int LTR ERVK -3 1984 41 3 957 2833 31 2 142 chr3 48763530 48763979 -110835804 - RLTR10 LTR ERVK -4 386 1 3 957 13429 48 11 2 chr3 48764095 48766382 -110833401 - L1Md_F2 LINE L1 -2 6580 4263 3 957 2658 91 0 0 chr3 48766400 48766761 -110833022 - L1_Mm LINE L1 -640 5243 4883 3 957 23 78 0 0 chr3 48766944 48766995 -110832788 + AT_rich Low_complexity Low_complexity 1 51 0 3 957 383 345 50 33 chr3 48767980 48768160 -110831623 - MT2A LTR ERVL -69 464 282 3 957 410 414 48 0 chr3 48768611 48768821 -110830962 - B4A SINE B4 -72 220 1 3 957 441 0 0 0 chr3 48769301 48769350 -110830433 + (TA)n Simple_repeat Simple_repeat 1 49 0 3 957 559 317 0 42 chr3 48769588 48769779 -110830004 - B3A SINE B2 -15 183 1 3 957 297 333 10 0 chr3 48770340 48770439 -110829344 + MER58B DNA MER1_type 242 341 0 3 957 347 253 38 103 chr3 48770571 48770713 -110829070 + ORR1D2 LTR MaLR 239 368 -11 3 957 1952 215 24 54 chr3 48771004 48771427 -110828356 - RMER15 LTR ERVL -40 535 126 3 957 649 153 329 0 chr3 48771571 48771741 -110828042 - URR1A DNA MER1_type 0 226 1 3 957 21 82 0 0 chr3 48771797 48771846 -110827937 + AT_rich Low_complexity Low_complexity 1 49 0 3 957 802 282 100 34 chr3 48771926 48772487 -110827296 + L1MC LINE L1 3172 3769 -2377 3 957 1531 237 33 50 chr3 48773047 48773443 -110826340 - Lx5 LINE L1 -3 7047 6659 3 957 3772 228 34 18 chr3 48774021 48774911 -110824872 - Lx5 LINE L1 -3 7047 6144 3 957 815 233 26 22 chr3 48774910 48775172 -110824611 - Lx5 LINE L1 -5943 1143 888 3 957 234 256 67 34 chr3 48775854 48775943 -110823840 - MLT1A LTR MaLR -272 102 11 3 957 246 32 0 0 chr3 48776762 48776793 -110822990 + (CA)n Simple_repeat Simple_repeat 2 32 0 3 957 1406 200 34 113 chr3 48776951 48777368 -110822415 + ORR1C2 LTR MaLR 1 384 0 3 957 36299 35 1 8 chr3 48777536 48782724 -110817059 + L1Md_T LINE L1 441 5586 -297 3 957 8235 32 14 0 chr3 48782725 48783706 -110816077 + L1Md_T LINE L1 5588 6582 0 3 957 24 53 0 0 chr3 48783970 48784008 -110815775 + AT_rich Low_complexity Low_complexity 1 38 0 3 957 3577 61 4 0 chr3 48784009 48784466 -110815317 - L1Md_T LINE L1 -2 6580 6122 3 957 480 134 0 0 chr3 48784967 48785064 -110814719 + (TC)n Simple_repeat Simple_repeat 1 97 0 3 957 297 320 56 24 chr3 48785541 48785666 -110814117 - B3A SINE B2 -67 131 3 3 957 21 57 0 0 chr3 48785702 48785737 -110814046 + AT_rich Low_complexity Low_complexity 1 35 0 3 957 327 381 24 14 chr3 48785824 48786037 -110813746 - L1MC3 LINE L1 -51 7734 7520 3 957 951 256 169 97 chr3 48786569 48787040 -110812743 - MT2A LTR ERVL 0 601 1 3 957 449 146 126 89 chr3 48787042 48787177 -110812606 - MERVL_2A-int LTR ERVL -2 5759 5620 3 957 829 235 27 9 chr3 48787178 48787397 -110812386 - MERVL_2A-int LTR ERVL -73 5688 5466 3 957 1288 315 63 55 chr3 48787503 48788238 -110811545 - Lx8 LINE L1 -1483 5990 5230 3 957 612 0 0 0 chr3 48788238 48788306 -110811477 + (TTTTA)n Simple_repeat Simple_repeat 4 71 0 3 957 1288 313 66 55 chr3 48788306 48788639 -110811144 - Lx8 LINE L1 -618 5229 4885 3 957 436 298 84 7 chr3 48788727 48788869 -110810914 - RSINE1 SINE B4 -2 163 11 3 957 719 251 61 29 chr3 48788880 48789191 -110810592 - L1_Mur3 LINE L1 -959 4918 4599 3 957 600 215 16 16 chr3 48789827 48789950 -110809833 + B1_Mur2 SINE Alu 3 125 -24 3 957 396 103 0 0 chr3 48789950 48790008 -110809775 + (TA)n Simple_repeat Simple_repeat 2 59 0 3 957 2415 139 19 11 chr3 48791689 48792236 -110807547 - Lx2 LINE L1 -1002 5995 5447 3 957 7280 132 19 5 chr3 48792246 48793936 -110805847 - L1_Mus3 LINE L1 0 6638 4917 3 957 2428 152 133 4 chr3 48793940 48794390 -110805393 + Lx2 LINE L1 6490 6997 0 3 957 180 0 0 0 chr3 48794438 48794458 -110805325 + (A)n Simple_repeat Simple_repeat 1 20 0 3 957 24 53 0 0 chr3 48794655 48794693 -110805090 + AT_rich Low_complexity Low_complexity 1 38 0 3 957 429 261 83 23 chr3 48794753 48794886 -110804897 - B3 SINE B2 0 216 76 4 957 733 305 81 6 chr3 48794935 48795188 -110804595 - B4A SINE B4 -22 270 1 4 957 293 140 0 17 chr3 48795579 48795637 -110804146 + (TTA)n Simple_repeat Simple_repeat 1 57 0 4 957 2337 207 68 22 chr3 48795638 48796181 -110803602 + RLTR20B3 LTR ERVK 3 570 -7 4 957 366 23 0 0 chr3 48796194 48796237 -110803546 + (CTA)n Simple_repeat Simple_repeat 1 43 0 4 957 279 0 0 0 chr3 48796237 48796268 -110803515 + (TAA)n Simple_repeat Simple_repeat 3 33 0 4 957 1180 303 52 19 chr3 48796289 48796713 -110803070 - Lx6 LINE L1 -45 7415 6978 4 957 2234 144 108 56 chr3 48796707 48797169 -110802614 - L1VL4 LINE L1 -5446 856 371 4 957 648 247 48 77 chr3 48797149 48797461 -110802322 - L1_Mus3 LINE L1 -6534 1194 892 3 957 585 322 35 5 chr3 48798224 48798424 -110801359 - B3 SINE B2 -9 207 2 4 957 1227 150 0 70 chr3 48798435 48798480 -110801303 - Lx LINE L1 -1 6653 6623 4 957 3580 70 0 0 chr3 48798480 48798937 -110800846 - L1_Mus2 LINE L1 -1 6565 6109 4 957 1327 138 0 9 chr3 48798937 48799149 -110800634 - Lx2 LINE L1 -26 6971 6762 4 957 1358 112 148 0 chr3 48799133 48799356 -110800427 - Lx2 LINE L1 -353 6644 6389 4 957 312 307 106 14 chr3 48800044 48800186 -110799597 + HAL1-3A_ME LINE L1 2284 2438 -420 4 957 1260 28 0 37 chr3 48800187 48800374 -110799409 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 4 957 498 189 13 38 chr3 48800376 48800421 -110799362 + polypurine Low_complexity Low_complexity 2 45 0 4 957 1169 73 0 22 chr3 48800421 48800603 -110799180 + (GGAA)n Simple_repeat Simple_repeat 1 178 0 4 957 498 189 13 38 chr3 48800603 48800628 -110799155 + polypurine Low_complexity Low_complexity 46 69 0 4 957 1269 61 0 16 chr3 48800628 48800811 -110798972 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 4 957 498 189 13 38 chr3 48800811 48800898 -110798885 + polypurine Low_complexity Low_complexity 70 156 0 4 957 1068 111 0 16 chr3 48800902 48801085 -110798698 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 4 957 22 88 0 0 chr3 48801262 48801319 -110798464 + AT_rich Low_complexity Low_complexity 1 57 0 4 957 273 326 15 8 chr3 48801391 48801521 -110798262 + GA-rich Low_complexity Low_complexity 1 131 0 4 957 1305 72 5 0 chr3 48802318 48802526 -110797257 + (TAGA)n Simple_repeat Simple_repeat 1 208 0 4 957 543 371 77 46 chr3 48802549 48803119 -110796664 - MER82 DNA MER2_type -13 640 53 4 957 21 36 0 0 chr3 48803806 48803834 -110795949 + AT_rich Low_complexity Low_complexity 1 28 0 4 957 23 54 0 0 chr3 48803995 48804032 -110795751 + AT_rich Low_complexity Low_complexity 1 37 0 4 957 389 198 8 0 chr3 48804140 48804266 -110795517 + (TCTA)n Simple_repeat Simple_repeat 4 130 0 4 957 198 0 0 0 chr3 48804433 48804455 -110795328 + (TTTG)n Simple_repeat Simple_repeat 3 24 0 4 957 40152 19 1 6 chr3 48804622 48810845 -110788938 - L1Md_A LINE L1 0 6582 423 4 957 22 35 0 0 chr3 48811343 48811372 -110788411 + AT_rich Low_complexity Low_complexity 1 29 0 4 957 351 0 0 0 chr3 48813973 48814012 -110785771 + (TTG)n Simple_repeat Simple_repeat 1 39 0 4 957 297 51 0 0 chr3 48814169 48814208 -110785575 + (TG)n Simple_repeat Simple_repeat 1 39 0 4 957 307 361 24 40 chr3 48814259 48814383 -110785400 - RSINE1 SINE B4 -41 124 3 4 957 432 0 0 0 chr3 48814456 48814504 -110785279 + (GA)n Simple_repeat Simple_repeat 2 49 0 4 957 369 0 0 0 chr3 48814756 48814797 -110784986 + (TA)n Simple_repeat Simple_repeat 1 41 0 4 957 22 0 0 0 chr3 48814827 48814849 -110784934 + AT_rich Low_complexity Low_complexity 1 22 0 4 957 2791 85 10 5 chr3 48815228 48815618 -110784165 + Lx3_Mus LINE L1 6618 7009 0 4 957 2285 109 5 89 chr3 48815952 48816344 -110783439 + RLTR10D LTR ERVK 1 359 0 4 957 247 150 33 0 chr3 48817372 48817432 -110782351 + (TA)n Simple_repeat Simple_repeat 1 62 0 4 957 9263 161 76 4 chr3 48818136 48818492 -110781291 + Lx4B LINE L1 3944 4312 -1565 4 957 4797 35 16 23 chr3 48818492 48819083 -110780700 + L1Md_F3 LINE L1 5970 6558 -26 4 957 3352 40 2 0 chr3 48819083 48819478 -110780305 - MTA_Mm LTR MaLR 0 396 1 4 957 9126 40 0 1 chr3 48819478 48820577 -110779206 - MTA_Mm-int LTR MaLR 0 1098 1 4 957 3367 40 2 0 chr3 48820577 48820972 -110778811 - MTA_Mm LTR MaLR 0 396 1 4 957 4797 35 16 23 chr3 48820972 48820997 -110778786 + L1Md_F3 LINE L1 6559 6582 -2 4 957 9263 176 55 7 chr3 48820997 48823574 -110776209 + Lx4B LINE L1 4313 7039 -19 4 957 204 40 0 0 chr3 48823574 48823599 -110776184 + (TTAA)n Simple_repeat Simple_repeat 2 26 0 4 957 384 274 206 36 chr3 48823659 48824023 -110775760 - L1MA7 LINE L1 -9 6282 5857 4 957 426 20 0 0 chr3 48824052 48824103 -110775680 + (TG)n Simple_repeat Simple_repeat 1 51 0 4 957 456 18 0 0 chr3 48824103 48824152 -110775631 + (GA)n Simple_repeat Simple_repeat 2 50 0 4 957 872 102 7 0 chr3 48824152 48824299 -110775484 + (GGAA)n Simple_repeat Simple_repeat 2 149 0 4 957 547 150 0 0 chr3 48825143 48825243 -110774540 - L1_Mus4 LINE L1 -7 6629 6530 4 957 553 78 13 0 chr3 48825243 48825320 -110774463 + Lx LINE L1 6342 6419 -235 4 957 687 114 8 16 chr3 48826559 48826684 -110773099 - Lx LINE L1 0 6654 6531 4 957 599 304 98 23 chr3 48828332 48828588 -110771195 - B4A SINE B4 -14 278 4 4 957 32 0 0 0 chr3 48828860 48828892 -110770891 + AT_rich Low_complexity Low_complexity 1 32 0 4 957 408 181 0 0 chr3 48830181 48830264 -110769519 + (TG)n Simple_repeat Simple_repeat 1 83 0 4 957 15316 84 1 1 chr3 48830935 48833025 -110766758 + L1_Mm LINE L1 3499 5586 -297 4 957 7828 48 13 0 chr3 48833025 48833996 -110765787 + L1Md_F2 LINE L1 5587 6570 -12 4 957 336 183 26 17 chr3 48834321 48834438 -110765345 + GA-rich Low_complexity Low_complexity 3 120 0 4 957 307 389 23 15 chr3 48834462 48834595 -110765188 + RSINE1 SINE B4 28 161 -4 4 957 644 199 14 21 chr3 48834634 48834778 -110765005 + Lx3B LINE L1 6827 6969 -4 4 957 38 39 0 0 chr3 48834779 48834831 -110764952 + AT_rich Low_complexity Low_complexity 1 52 0 4 957 222 220 0 0 chr3 48834857 48834916 -110764867 + (TG)n Simple_repeat Simple_repeat 2 60 0 4 957 1092 95 0 7 chr3 48834936 48835074 -110764709 + B1_Mus1 SINE Alu 1 138 -10 4 957 351 0 0 0 chr3 48835074 48835113 -110764670 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 4 957 200 156 22 22 chr3 48835511 48835557 -110764226 + (CAAA)n Simple_repeat Simple_repeat 3 48 0 4 957 428 328 49 64 chr3 48838686 48838950 -110760833 - ORR1E LTR MaLR -50 309 50 4 957 4466 8 0 0 chr3 48840059 48840602 -110759181 - L1Md_A LINE L1 0 6582 6082 4 957 1767 209 36 63 chr3 48841224 48841759 -110758024 + RMER19B LTR ERVK 79 664 -238 4 957 642 337 58 18 chr3 48841761 48842036 -110757747 - MTEa LTR MaLR -93 286 1 4 957 319 278 102 4 chr3 48842186 48842318 -110757465 - B2_Mm2 SINE B2 -35 160 18 4 957 180 326 93 21 chr3 48842745 48842842 -110756941 - L3 LINE CR1 -304 4185 4082 4 957 24 67 0 0 chr3 48843112 48843157 -110756626 + AT_rich Low_complexity Low_complexity 1 45 0 4 957 300 400 24 8 chr3 48843442 48843568 -110756215 + MLT1H1 LTR MaLR 1 128 -427 4 957 24 53 0 0 chr3 48844385 48844423 -110755360 + AT_rich Low_complexity Low_complexity 1 38 0 4 957 252 122 0 0 chr3 48845121 48845162 -110754621 + (TTA)n Simple_repeat Simple_repeat 3 43 0 4 957 4677 134 9 4 chr3 48845904 48846645 -110753138 + Lx3A LINE L1 6227 6971 -10 4 957 1634 36 0 0 chr3 48846654 48846847 -110752936 + B2_Mm1t SINE B2 1 193 0 4 957 246 95 0 0 chr3 48846850 48846892 -110752891 + (TAAA)n Simple_repeat Simple_repeat 2 43 0 4 957 757 308 22 22 chr3 48847229 48847458 -110752325 + B4A SINE B4 42 270 -22 4 957 396 59 0 0 chr3 48847484 48847535 -110752248 + (CA)n Simple_repeat Simple_repeat 1 51 0 4 957 245 246 0 0 chr3 48847536 48847593 -110752190 + GA-rich Low_complexity Low_complexity 1 57 0 4 957 4906 141 67 6 chr3 48848308 48849035 -110750748 + Lx2 LINE L1 6110 6866 -131 4 957 225 0 0 0 chr3 48849035 48849060 -110750723 + (TGGG)n Simple_repeat Simple_repeat 1 25 0 4 957 4906 141 67 6 chr3 48849060 48849169 -110750614 + Lx2 LINE L1 6867 6995 -2 4 957 565 324 69 4 chr3 48850308 48850503 -110749280 - B3A SINE B2 0 216 11 4 957 8199 45 2 2 chr3 48850674 48852317 -110747466 - L1Md_F2 LINE L1 -1 6581 4939 4 957 9604 72 2 0 chr3 48852315 48853592 -110746191 + L1Md_F2 LINE L1 3692 4970 -913 4 957 25 51 0 0 chr3 48853714 48853753 -110746030 + AT_rich Low_complexity Low_complexity 1 39 0 4 957 331 55 39 52 chr3 48854081 48854158 -110745625 + (CAA)n Simple_repeat Simple_repeat 2 77 0 4 957 358 115 16 16 chr3 48856268 48856330 -110743453 + HAL1-3A_ME LINE L1 1966 2027 -831 4 957 438 209 0 0 chr3 48856359 48856498 -110743285 + (CA)n Simple_repeat Simple_repeat 2 140 0 4 957 17760 62 2 2 chr3 48857752 48860750 -110739033 - L1Md_F2 LINE L1 0 6582 3586 4 957 2841 194 4 16 chr3 48860759 48861303 -110738480 - Lx2B LINE L1 -7 6993 6457 4 957 1237 86 6 17 chr3 48861303 48861473 -110738310 - L1_Mur1 LINE L1 -342 5544 5375 4 957 22 35 0 0 chr3 48861497 48861526 -110738257 + AT_rich Low_complexity Low_complexity 1 29 0 4 957 428 373 61 48 chr3 48862967 48863297 -110736486 - MTEa LTR MaLR -45 334 1 4 957 3102 169 47 8 chr3 48863337 48863934 -110735849 + Lx4B LINE L1 5989 6608 -450 4 957 1138 191 23 89 chr3 48863938 48864242 -110735541 + Lx4B LINE L1 6775 7058 0 4 957 558 345 33 29 chr3 48864460 48864735 -110735048 + Lx8 LINE L1 7053 7328 -145 4 957 266 0 29 0 chr3 48864739 48864773 -110735010 + (CAAA)n Simple_repeat Simple_repeat 3 37 0 4 957 22 80 0 0 chr3 48865020 48865070 -110734713 + AT_rich Low_complexity Low_complexity 1 50 0 4 957 213 39 0 0 chr3 48865688 48865714 -110734069 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 4 957 322 354 78 8 chr3 48865750 48865878 -110733905 + RSINE1 SINE B4 28 164 -1 4 957 625 249 69 61 chr3 48866154 48866422 -110733361 + RLTR20D LTR ERVK 52 291 -277 4 957 358 232 55 218 chr3 48866400 48866461 -110733322 + RLTR20D LTR ERVK 406 460 -108 4 957 885 89 0 0 chr3 48866461 48866585 -110733198 + (GA)n Simple_repeat Simple_repeat 1 124 0 4 957 358 232 55 218 chr3 48866585 48866688 -110733095 + RLTR20D LTR ERVK 461 543 -25 4 957 251 250 66 0 chr3 48866869 48866945 -110732838 + MLT1A0 LTR MaLR 262 342 -23 5 957 22 35 0 0 chr3 48867404 48867433 -110732350 + AT_rich Low_complexity Low_complexity 1 29 0 5 957 318 352 17 11 chr3 48867452 48867633 -110732150 - B3A SINE B2 -15 183 2 5 957 228 260 26 0 chr3 48867975 48868052 -110731731 - L1M2 LINE L1 -376 5915 5837 5 957 531 0 0 0 chr3 48868287 48868346 -110731437 + (TAA)n Simple_repeat Simple_repeat 3 61 0 5 957 228 248 7 133 chr3 48868358 48868493 -110731290 - L1M2 LINE L1 -743 5446 5329 5 957 286 22 43 21 chr3 48869474 48869521 -110730262 + (TTTTG)n Simple_repeat Simple_repeat 3 50 0 5 957 468 157 218 18 chr3 48870496 48870606 -110729177 + B1_Mur2 SINE Alu 16 147 -2 5 957 665 159 14 0 chr3 48870606 48870744 -110729039 + (CAATA)n Simple_repeat Simple_repeat 4 143 0 5 957 957 101 0 0 chr3 48870897 48871036 -110728747 + (CACAA)n Simple_repeat Simple_repeat 2 140 0 5 957 633 297 64 41 chr3 48873340 48873635 -110726148 - RMER15 LTR ERVL -3 572 271 5 957 280 190 25 0 chr3 48874837 48874916 -110724867 + CT-rich Low_complexity Low_complexity 4 84 0 5 957 37764 44 0 3 chr3 48874945 48881234 -110718549 - L1Md_T LINE L1 0 6585 215 5 957 235 305 0 0 chr3 48881277 48881336 -110718447 - tRNA-Ala-GCY_ tRNA tRNA -14 61 3 5 957 741 23 0 0 chr3 48882278 48882365 -110717418 + (GAAA)n Simple_repeat Simple_repeat 2 88 0 5 957 418 329 7 14 chr3 48882780 48882925 -110716858 + ID_B1 SINE B4 12 155 -69 5 957 223 354 110 0 chr3 48882868 48882950 -110716833 + PB1D10 SINE Alu 18 108 -9 5 957 27 49 0 0 chr3 48883530 48883571 -110716212 + AT_rich Low_complexity Low_complexity 1 41 0 5 957 191 103 26 0 chr3 48883657 48883696 -110716087 + (CA)n Simple_repeat Simple_repeat 1 40 0 5 957 3777 220 77 22 chr3 48883744 48884716 -110715067 - RLTR25B LTR ERVK -2 1026 1 5 957 241 286 35 79 chr3 48884716 48884809 -110714974 - RLTR25B LTR ERVK -1015 88 1 5 957 321 26 0 0 chr3 48885278 48885316 -110714467 + (CA)n Simple_repeat Simple_repeat 2 39 0 5 957 303 262 165 12 chr3 48885521 48885606 -110714177 + PB1D10 SINE Alu 7 104 -13 5 957 553 305 115 10 chr3 48885629 48885821 -110713962 + B4A SINE B4 3 214 -78 5 957 883 156 17 0 chr3 48885824 48885997 -110713786 + CT-rich Low_complexity Low_complexity 4 179 0 5 957 641 66 11 0 chr3 48886000 48886091 -110713692 + (TCTA)n Simple_repeat Simple_repeat 3 94 0 5 957 808 167 50 21 chr3 48886095 48886236 -110713547 - B1_Mur4 SINE Alu 0 150 6 5 957 31 26 0 0 chr3 48887475 48887513 -110712270 + AT_rich Low_complexity Low_complexity 1 38 0 5 957 1501 230 201 10 chr3 48887599 48888112 -110711671 + RMER19C LTR ERVK 1 611 0 5 957 225 154 0 0 chr3 48888328 48888367 -110711416 + (TG)n Simple_repeat Simple_repeat 2 40 0 5 957 600 14 0 0 chr3 48888367 48888436 -110711347 + (GA)n Simple_repeat Simple_repeat 1 69 0 5 957 364 286 125 8 chr3 48888571 48888691 -110711092 + RSINE1 SINE B4 2 135 -30 5 958 223 209 188 104 chr3 48891148 48891244 -110708539 - PB1D10 SINE Alu -2 115 12 5 958 2590 197 47 28 chr3 48892047 48892647 -110707136 - RMER19C LTR ERVK 0 611 1 5 958 300 53 0 0 chr3 48892781 48892819 -110706964 + (TG)n Simple_repeat Simple_repeat 2 39 0 5 958 1368 62 6 6 chr3 48893219 48893397 -110706386 + B2_Mm1t SINE B2 2 179 -14 5 958 969 113 49 0 chr3 48893425 48893567 -110706216 + B2_Mm2 SINE B2 47 195 0 5 958 30 0 0 0 chr3 48894238 48894268 -110705515 + AT_rich Low_complexity Low_complexity 1 30 0 5 958 677 52 10 0 chr3 48894269 48894365 -110705418 - L1_Mus1 LINE L1 -2 6565 6469 5 958 843 82 0 0 chr3 48894365 48894475 -110705308 + L1_Mus1 LINE L1 6202 6311 -256 5 958 27 29 0 0 chr3 48894638 48894672 -110705111 + AT_rich Low_complexity Low_complexity 1 34 0 5 958 306 288 60 37 chr3 48894872 48895003 -110704780 + B2_Mm2 SINE B2 1 135 -58 5 958 2307 173 20 11 chr3 48895005 48895460 -110704323 + RMER6B LTR ERVK 3 461 0 5 958 192 143 0 0 chr3 48895629 48895671 -110704112 + (TAG)n Simple_repeat Simple_repeat 2 43 0 5 958 384 77 0 0 chr3 48896322 48896374 -110703409 + (TA)n Simple_repeat Simple_repeat 2 53 0 5 958 339 259 56 0 chr3 48896722 48896830 -110702953 + MLT2C2 LTR ERVL 1 114 -350 5 958 243 304 0 60 chr3 48896824 48896908 -110702875 - ID2 SINE ID -3 80 2 5 958 22 0 0 0 chr3 48897519 48897541 -110702242 + AT_rich Low_complexity Low_complexity 1 22 0 5 958 198 143 0 0 chr3 48899193 48899228 -110700555 + (TTTTG)n Simple_repeat Simple_repeat 5 39 0 5 958 296 132 0 0 chr3 48899277 48899330 -110700453 - Lx5 LINE L1 -492 6558 6506 5 958 1655 261 65 28 chr3 48899524 48900106 -110699677 + RCHARR1 DNA MER1_type 371 974 0 5 958 26 64 0 0 chr3 48900662 48900709 -110699074 + AT_rich Low_complexity Low_complexity 1 47 0 5 958 6738 209 36 39 chr3 48900713 48902217 -110697566 - Lx5 LINE L1 -5 7045 5654 5 958 1366 133 13 9 chr3 48902217 48902445 -110697338 + Lx2 LINE L1 6769 6997 0 5 958 6738 178 35 98 chr3 48902445 48903791 -110695992 - Lx5 LINE L1 -224 5653 4274 5 958 4897 127 80 60 chr3 48903999 48905084 -110694699 - L1_Mus2 LINE L1 -1 6565 5455 5 958 968 156 11 6 chr3 48905084 48905265 -110694518 + L1_Mus3 LINE L1 6453 6634 -4 5 958 512 365 60 71 chr3 48905291 48905659 -110694124 + MTE2b LTR MaLR 1 364 -15 5 958 207 250 0 0 chr3 48906756 48906824 -110692959 + (TA)n Simple_repeat Simple_repeat 2 69 0 5 958 764 331 39 47 chr3 48908577 48908909 -110690874 + ORR1D2 LTR MaLR 1 329 -41 5 958 1093 272 91 40 chr3 48908909 48909307 -110690476 + MTD LTR MaLR 2 419 0 5 958 21 0 0 0 chr3 48909409 48909430 -110690353 + AT_rich Low_complexity Low_complexity 1 21 0 5 958 302 246 34 3 chr3 48909479 48909578 -110690205 - RMER1A Other Other -14 1016 932 5 958 253 186 0 28 chr3 48909897 48909969 -110689814 + (TA)n Simple_repeat Simple_repeat 1 70 0 5 958 851 103 43 35 chr3 48911001 48911142 -110688641 + B1_Mm SINE Alu 5 146 -1 5 958 495 48 0 0 chr3 48911142 48911204 -110688579 + (GA)n Simple_repeat Simple_repeat 1 62 0 5 958 597 256 116 0 chr3 48911874 48912073 -110687710 + URR1A DNA MER1_type 1 222 -4 5 958 1358 177 22 40 chr3 48912073 48912347 -110687436 - RLTR13D6 LTR ERVK 0 902 634 5 958 2863 131 11 62 chr3 48912347 48912876 -110686907 - RLTR13A3 LTR ERVK 0 978 477 5 958 186 71 0 0 chr3 48913746 48913774 -110686009 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 5 958 22 0 0 0 chr3 48915857 48915879 -110683904 + AT_rich Low_complexity Low_complexity 1 22 0 5 958 212 418 11 22 chr3 48916144 48916325 -110683458 + ID_B1 SINE B4 15 193 -31 5 958 465 282 8 16 chr3 48916217 48916343 -110683440 + B1_Mur3 SINE Alu 7 131 -18 5 958 373 314 45 75 chr3 48917172 48917372 -110682411 + MTEb LTR MaLR 22 215 -164 5 958 198 71 0 0 chr3 48918089 48918117 -110681666 + (CAA)n Simple_repeat Simple_repeat 1 28 0 5 958 1000 305 74 54 chr3 48919304 48920043 -110679740 + Lx9 LINE L1 6872 7625 -19 5 958 252 86 0 0 chr3 48921985 48922020 -110677763 + (TA)n Simple_repeat Simple_repeat 1 35 0 5 958 265 151 0 19 chr3 48923733 48923787 -110675996 + L1_Mm LINE L1 2071 2123 -3760 5 958 23 54 0 0 chr3 48924738 48924775 -110675008 + AT_rich Low_complexity Low_complexity 1 37 0 5 958 441 368 7 0 chr3 48924937 48925081 -110674702 - B3 SINE B2 -11 205 61 5 958 204 188 42 0 chr3 48926383 48926431 -110673352 + (CAGAGA)n Simple_repeat Simple_repeat 5 54 0 5 958 324 0 0 0 chr3 48926521 48926557 -110673226 + (TAGA)n Simple_repeat Simple_repeat 1 36 0 5 958 4465 80 0 28 chr3 48926787 48927434 -110672349 + L1Md_T LINE L1 265 893 -5629 5 958 29844 37 2 0 chr3 48927420 48931069 -110668714 + L1Md_T LINE L1 1935 5589 -297 5 958 8488 30 0 0 chr3 48931069 48932065 -110667718 + L1Md_T LINE L1 5590 6585 0 5 958 657 0 0 0 chr3 48932082 48932155 -110667628 + (GGAA)n Simple_repeat Simple_repeat 3 75 0 5 958 185 206 0 30 chr3 48933025 48933050 -110666733 + A-rich Low_complexity Low_complexity 1 25 0 5 958 1141 68 0 14 chr3 48933050 48933198 -110666585 + B1_Mus2 SINE Alu 1 146 -1 5 958 185 206 0 30 chr3 48933198 48933272 -110666511 + A-rich Low_complexity Low_complexity 26 96 0 5 958 11332 82 29 1 chr3 48933604 48935844 -110663939 - L1Md_F2 LINE L1 0 6582 4300 5 958 573 208 0 0 chr3 48935844 48935945 -110663838 + ETnERV2-int LTR ERVK 7095 7195 -211 5 958 296 323 22 8 chr3 48936503 48936637 -110663146 + RMER16-int LTR ERVK 169 304 -6940 5 958 1307 199 169 54 chr3 48936682 48937107 -110662676 + RMER16-int LTR ERVK 346 819 -4587 5 958 549 180 63 0 chr3 48937112 48937223 -110662560 + RMER16-int LTR ERVK 938 1055 -5082 5 958 10205 151 37 25 chr3 48937243 48939259 -110660524 + ETnERV2-int LTR ERVK 2935 4679 -2727 5 958 3059 70 0 0 chr3 48939257 48939656 -110660127 + ETnERV2-int LTR ERVK 5356 5754 -1652 5 958 5875 151 76 94 chr3 48939654 48941075 -110658708 + RLTR45-int LTR ERVK 4676 6071 -1173 5 958 940 264 29 12 chr3 48941077 48941449 -110658334 + RLTR45-int LTR ERVK 7506 7849 -368 5 958 4946 128 13 0 chr3 48941466 48942160 -110657623 + ETnERV2-int LTR ERVK 6494 7196 -210 5 958 21026 114 17 20 chr3 48942550 48946605 -110653178 - L1Md_F LINE L1 -1562 4321 271 5 958 488 137 10 0 chr3 48946843 48946945 -110652838 + (TG)n Simple_repeat Simple_repeat 2 104 0 5 958 22 56 0 0 chr3 48947348 48947384 -110652399 + AT_rich Low_complexity Low_complexity 1 36 0 5 958 257 257 14 14 chr3 48947926 48947997 -110651786 + Lx8 LINE L1 7041 7111 -362 5 958 804 21 0 0 chr3 48948122 48948216 -110651567 + (TTCTC)n Simple_repeat Simple_repeat 2 95 0 5 958 1051 86 0 0 chr3 48948221 48948361 -110651422 - B1_Mus2 SINE Alu -7 140 1 5 958 934 115 22 0 chr3 48949098 48949237 -110650546 - B1_Mus1 SINE Alu -5 143 2 5 958 256 308 45 27 chr3 48949511 48949621 -110650162 + ID_B1 SINE B4 107 218 -6 5 958 474 48 0 0 chr3 48949562 48949624 -110650159 + B1_Mm SINE Alu 83 144 -3 5 958 3148 145 53 16 chr3 48950775 48951336 -110648447 + MT2B LTR ERVL 18 599 -2 5 958 1537 53 0 21 chr3 48951589 48951782 -110648001 - B2_Mm1a SINE B2 -4 189 1 5 958 261 0 0 0 chr3 48952906 48952935 -110646848 + (CA)n Simple_repeat Simple_repeat 2 30 0 6 958 2275 207 47 16 chr3 48953012 48953498 -110646285 + RLTR20D LTR ERVK 3 503 -65 6 958 207 0 0 0 chr3 48954490 48954513 -110645270 + (CA)n Simple_repeat Simple_repeat 1 23 0 6 958 388 163 93 0 chr3 48955020 48955106 -110644677 - HAL1-3A_ME LINE L1 -788 2070 1977 6 958 624 81 20 117 chr3 48955775 48955971 -110643812 + (TCTA)n Simple_repeat Simple_repeat 3 179 0 6 958 21 0 0 0 chr3 48956971 48956992 -110642791 + AT_rich Low_complexity Low_complexity 1 21 0 6 958 32 0 0 0 chr3 48957838 48957870 -110641913 + AT_rich Low_complexity Low_complexity 1 32 0 6 958 230 286 95 0 chr3 48958495 48958558 -110641225 + RMER10A LTR ERVL 320 388 -54 6 958 300 239 16 80 chr3 48958880 48959001 -110640782 + RLTR31A_Mm LTR ERVK 451 584 0 6 958 230 267 70 39 chr3 48959062 48959218 -110640565 + Lx9 LINE L1 7356 7516 -128 6 958 473 212 0 9 chr3 48959277 48959391 -110640392 + (CATA)n Simple_repeat Simple_repeat 4 116 0 6 958 531 57 0 0 chr3 48960082 48960152 -110639631 + L1_Mus2 LINE L1 6492 6561 -5 6 958 2009 115 6 17 chr3 48960199 48960544 -110639239 + MusHAL1 LINE L1 572 912 -1800 6 958 17634 138 37 29 chr3 48960555 48964300 -110635483 - L1_Mus2 LINE L1 0 6566 2792 6 958 1939 124 33 3 chr3 48964300 48964607 -110635176 + IAPLTR2b LTR ERVK 1 316 -11 6 958 16678 116 47 28 chr3 48964618 48967354 -110632429 + IAPEz-int LTR ERVK 21 2982 -3499 6 958 3697 28 0 0 chr3 48967341 48967767 -110632016 + IAPEz-int LTR ERVK 3145 3570 -2911 6 958 3649 75 33 0 chr3 48967771 48968252 -110631531 + IAPEz-int LTR ERVK 4928 5424 -1057 6 958 4590 85 30 23 chr3 48968250 48968914 -110630869 + IAPEz-int LTR ERVK 5813 6481 0 6 958 2105 105 3 9 chr3 48968914 48969232 -110630551 + IAPLTR2b LTR ERVK 1 316 -11 6 958 8722 121 30 10 chr3 48969244 48970783 -110629000 - MusHAL1 LINE L1 -1119 2234 648 6 958 652 74 69 69 chr3 48970799 48970915 -110628868 - B1_Mm SINE Alu 0 147 32 6 958 3816 136 9 5 chr3 48970918 48971542 -110628241 - L1_Mus2 LINE L1 -5466 1150 526 6 958 604 212 41 0 chr3 48971544 48971714 -110628069 + Lx9 LINE L1 7466 7642 -2 6 958 325 250 120 8 chr3 48971972 48972089 -110627694 - Lx6 LINE L1 -6 7454 7325 6 958 2609 125 34 66 chr3 48972097 48972568 -110627215 - Lx LINE L1 -3 6651 6196 6 958 1632 249 168 25 chr3 48972654 48973173 -110626610 - RMER20B LTR ERVK -25 602 10 6 958 558 67 0 0 chr3 48973352 48973427 -110626356 + (TG)n Simple_repeat Simple_repeat 2 76 0 6 958 220 164 56 24 chr3 48974142 48974267 -110625516 + (TAGA)n Simple_repeat Simple_repeat 2 130 0 6 958 24 32 0 0 chr3 48974334 48974365 -110625418 + AT_rich Low_complexity Low_complexity 1 31 0 6 958 719 160 138 33 chr3 48975214 48975395 -110624388 - Lx9 LINE L1 -48 7596 7397 6 958 659 203 7 21 chr3 48975411 48975552 -110624231 - Lx9 LINE L1 -690 6954 6816 6 958 3836 271 38 11 chr3 48975552 48976604 -110623179 - Lx9 LINE L1 -259 7385 6306 6 958 1887 253 95 37 chr3 48976717 48977913 -110621870 - Lx9 LINE L1 -1592 6052 4778 6 958 627 145 177 0 chr3 48977919 48978105 -110621678 + Lx9 LINE L1 7425 7643 -1 6 958 25 31 0 0 chr3 48978111 48978143 -110621640 + AT_rich Low_complexity Low_complexity 1 32 0 6 958 4539 239 65 20 chr3 48978414 48979540 -110620243 - Lx6 LINE L1 -1 7459 6284 6 958 864 206 28 6 chr3 48979522 48979703 -110620080 + L1_Mur3 LINE L1 5603 5787 -93 6 958 315 65 0 0 chr3 48980441 48980487 -110619296 + (TG)n Simple_repeat Simple_repeat 1 46 0 6 958 189 0 0 0 chr3 48981210 48981231 -110618552 + (TG)n Simple_repeat Simple_repeat 1 21 0 6 958 561 55 0 0 chr3 48982774 48982847 -110616936 + (TG)n Simple_repeat Simple_repeat 2 74 0 6 958 389 325 39 23 chr3 48983312 48983441 -110616342 + RSINE1 SINE B4 18 148 -17 6 958 261 0 0 0 chr3 48983486 48983515 -110616268 + (CA)n Simple_repeat Simple_repeat 1 29 0 6 958 892 131 7 0 chr3 48983746 48983883 -110615900 + B1_Mus2 SINE Alu 1 138 -9 6 958 7133 86 6 1 chr3 48983883 48985079 -110614704 + L1_Mus1 LINE L1 5363 6567 0 6 958 267 191 0 0 chr3 48985082 48985145 -110614638 + A-rich Low_complexity Low_complexity 1 63 0 6 958 307 354 13 70 chr3 48985523 48985681 -110614102 + RSINE1 SINE B4 15 163 -2 6 958 354 187 0 0 chr3 48985682 48985773 -110614010 + (CA)n Simple_repeat Simple_repeat 2 92 0 6 958 24 32 0 0 chr3 48985780 48985811 -110613972 + AT_rich Low_complexity Low_complexity 1 31 0 6 958 347 304 178 15 chr3 48985975 48986347 -110613436 - Tigger8 DNA MER2_type -185 481 34 6 958 225 337 23 11 chr3 48986552 48986639 -110613144 + MIRb SINE MIR 124 211 -57 6 958 209 33 33 0 chr3 48986946 48986976 -110612807 + (CAA)n Simple_repeat Simple_repeat 3 33 0 6 958 237 132 0 0 chr3 48987000 48987038 -110612745 + (TTTA)n Simple_repeat Simple_repeat 3 40 0 6 958 4059 228 126 18 chr3 48987047 48988159 -110611624 - Lx4B LINE L1 -4 7054 5823 6 958 8122 52 1 1 chr3 48988147 48989362 -110610421 - L1Md_F2 LINE L1 -11 6571 5357 6 958 844 200 42 28 chr3 48989367 48989583 -110610200 - Lx4B LINE L1 -5950 1136 918 6 958 468 0 0 0 chr3 48991236 48991288 -110608495 + (TG)n Simple_repeat Simple_repeat 2 53 0 6 958 1150 288 26 54 chr3 48992275 48992704 -110607079 - Lx6 LINE L1 -26 7434 7018 6 958 1311 284 21 9 chr3 48992702 48993126 -110606657 + Lx6 LINE L1 6455 6894 -566 6 958 545 317 30 42 chr3 48993174 48993411 -110606372 - Lx6 LINE L1 -27 7433 7200 6 958 1655 49 0 0 chr3 48994388 48994593 -110605190 + L1Md_T LINE L1 6378 6582 0 6 958 484 288 144 0 chr3 48994989 48995149 -110604634 - MTE2b LTR MaLR -2 377 195 6 958 201 139 0 0 chr3 48995165 48995208 -110604575 + (TTTTG)n Simple_repeat Simple_repeat 2 44 0 6 958 372 119 0 0 chr3 48995209 48995268 -110604515 + (TC)n Simple_repeat Simple_repeat 2 60 0 6 958 530 274 49 27 chr3 48995268 48995452 -110604331 - MTE2b LTR MaLR -191 188 1 6 958 590 0 14 0 chr3 48995794 48995864 -110603919 + (CA)n Simple_repeat Simple_repeat 2 72 0 6 958 554 227 15 36 chr3 48997608 48997745 -110602038 - Lx6 LINE L1 -11 7449 7316 6 958 5898 128 14 14 chr3 48997753 48998729 -110601054 - L1_Mur2 LINE L1 -280 5597 4622 6 958 1891 198 88 28 chr3 48998743 48999175 -110600608 + Lx4A LINE L1 6600 7057 -1 6 958 1824 275 39 19 chr3 48999192 48999678 -110600105 - Lx6 LINE L1 -138 7322 6827 6 958 268 340 32 45 chr3 49000392 49000549 -110599234 + B4A SINE B4 124 278 -14 1 958 713 273 32 54 chr3 49000727 49000764 -110599019 + B3 SINE B2 1 37 -179 2 958 2929 82 74 47 chr3 49000764 49001212 -110598571 + L1_Mus2 LINE L1 6101 6560 -6 3 958 234 0 0 0 chr3 49001215 49001241 -110598542 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 4 958 713 273 32 54 chr3 49001241 49001420 -110598363 + B3 SINE B2 38 216 0 2 958 384 22 0 0 chr3 49001864 49001909 -110597874 + (TA)n Simple_repeat Simple_repeat 2 46 0 5 958 3033 43 3 0 chr3 49001909 49002280 -110597503 - L1Md_F2 LINE L1 -18 6564 6193 6 958 350 277 8 97 chr3 49002344 49002468 -110597315 - B3A SINE B2 -13 203 91 7 958 1151 241 72 42 chr3 49003087 49003123 -110596660 + ORR1D1 LTR MaLR 3 39 -335 8 958 2429 47 0 0 chr3 49003123 49003420 -110596363 - L1Md_T LINE L1 -1 6581 6285 9 958 1151 241 72 42 chr3 49003420 49003742 -110596041 + ORR1D1 LTR MaLR 40 372 -2 8 958 1051 301 42 25 chr3 49003747 49004105 -110595678 + ORR1D2 LTR MaLR 7 370 0 1 958 324 0 0 0 chr3 49004441 49004477 -110595306 + (TC)n Simple_repeat Simple_repeat 2 37 0 1 958 180 0 0 0 chr3 49004477 49004496 -110595287 + (TG)n Simple_repeat Simple_repeat 1 20 0 1 958 609 14 0 0 chr3 49004496 49004565 -110595218 + (GA)n Simple_repeat Simple_repeat 1 70 0 1 958 261 283 10 0 chr3 49004778 49004877 -110594906 - L1MC LINE L1 -1586 4560 4461 1 958 1071 58 0 0 chr3 49005368 49005507 -110594276 + (TC)n Simple_repeat Simple_repeat 2 140 0 1 958 243 0 0 0 chr3 49005507 49005533 -110594250 + (TG)n Simple_repeat Simple_repeat 2 28 0 1 958 249 382 49 0 chr3 49005570 49005672 -110594111 - PB1D10 SINE Alu -10 107 1 1 958 14797 183 78 54 chr3 49006271 49007469 -110592314 - MusHAL1 LINE L1 -522 5355 4010 1 958 282 29 0 0 chr3 49007469 49007504 -110592279 + (TTGG)n Simple_repeat Simple_repeat 2 36 0 1 958 14797 183 78 54 chr3 49007504 49008516 -110591267 - MusHAL1 LINE L1 -1868 4009 3020 1 958 3964 60 8 2 chr3 49008516 49009029 -110590754 + L1Md_F3 LINE L1 6055 6570 -14 2 958 14797 183 78 54 chr3 49009029 49009971 -110589812 - MusHAL1 LINE L1 -2858 3019 2056 1 958 210 128 0 0 chr3 49009971 49010010 -110589773 + (TG)n Simple_repeat Simple_repeat 2 40 0 2 958 14797 183 78 54 chr3 49010010 49010549 -110589234 - MusHAL1 LINE L1 -3822 2055 1542 1 958 927 78 62 0 chr3 49010549 49010678 -110589105 + B1_Mm SINE Alu 1 137 -10 2 958 198 0 0 0 chr3 49010678 49010700 -110589083 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 2 958 14797 189 71 50 chr3 49010700 49011039 -110588744 - MusHAL1 LINE L1 -4336 1541 1226 1 958 4680 47 2 0 chr3 49011982 49012557 -110587226 + L1Md_F2 LINE L1 5995 6570 -12 2 958 1114 318 74 24 chr3 49012579 49013036 -110586747 - RCHARR1 DNA MER1_type -469 505 26 2 958 1618 211 5 128 chr3 49013036 49013465 -110586318 - ORR1B1 LTR MaLR 0 394 19 2 958 30 59 0 0 chr3 49013901 49013952 -110585831 + AT_rich Low_complexity Low_complexity 1 51 0 2 958 280 106 64 0 chr3 49014881 49014928 -110584855 - MLT1B LTR MaLR -24 366 317 2 958 345 286 41 92 chr3 49014989 49015059 -110584724 - MLT1B LTR MaLR -180 210 153 2 958 1462 234 55 165 chr3 49015059 49015745 -110584038 - RMER19C LTR ERVK 0 611 1 2 958 345 286 41 92 chr3 49015745 49015870 -110583913 - MLT1B LTR MaLR -238 152 26 2 958 28893 78 18 1 chr3 49016006 49020006 -110579777 + L1Md_F2 LINE L1 1522 5586 -297 3 119 7961 51 1 2 chr3 49020006 49021002 -110578781 + L1Md_F2 LINE L1 5587 6581 -1 3 959 213 283 0 0 chr3 49022334 49022387 -110577396 + CT-rich Low_complexity Low_complexity 1 53 0 3 959 396 0 0 0 chr3 49022494 49022538 -110577245 + (TTTA)n Simple_repeat Simple_repeat 2 45 0 3 959 1297 269 47 11 chr3 49022619 49022980 -110576803 - ORR1D1 LTR MaLR 0 374 1 3 959 570 29 0 0 chr3 49023085 49023153 -110576630 + (TCTA)n Simple_repeat Simple_repeat 1 68 0 3 959 446 199 357 15 chr3 49023153 49023352 -110576431 - Lx4B LINE L1 -21 7037 6771 3 959 288 313 92 42 chr3 49023467 49023727 -110576056 - B4A SINE B4 -18 274 2 3 959 204 40 0 0 chr3 49023727 49023752 -110576031 + (CAAAA)n Simple_repeat Simple_repeat 3 27 0 3 959 1350 94 15 20 chr3 49023851 49024046 -110575737 + B2_Mm2 SINE B2 2 195 0 3 959 251 268 0 0 chr3 49025163 49025234 -110574549 + L1MC4 LINE L1 6992 7062 -980 3 959 1102 73 0 0 chr3 49025333 49025469 -110574314 + B1_Mus1 SINE Alu 1 136 -12 4 959 531 0 0 0 chr3 49025469 49025528 -110574255 + (TAA)n Simple_repeat Simple_repeat 2 60 0 4 959 22 0 0 0 chr3 49025646 49025668 -110574115 + AT_rich Low_complexity Low_complexity 1 22 0 4 959 200 387 67 20 chr3 49027172 49027367 -110572416 + MIRb SINE MIR 1 204 -64 4 959 21 0 0 0 chr3 49027893 49027914 -110571869 + AT_rich Low_complexity Low_complexity 1 21 0 4 959 494 326 63 9 chr3 49027914 49028137 -110571646 - MER82 DNA MER2_type -280 373 139 4 959 269 337 43 0 chr3 49028150 49028242 -110571541 - MER82 DNA MER2_type -557 96 1 4 959 3248 21 39 0 chr3 49028528 49028909 -110570874 - MTA_Mm LTR MaLR 0 396 1 4 959 9026 27 11 7 chr3 49028911 49030003 -110569780 - MTA_Mm-int LTR MaLR -2 1096 1 4 959 3200 29 39 0 chr3 49030003 49030384 -110569399 - MTA_Mm LTR MaLR 0 396 1 4 959 257 274 36 0 chr3 49031611 49031695 -110568088 + L1MC LINE L1 2490 2576 -3570 4 959 270 215 0 0 chr3 49031800 49031879 -110567904 + (TG)n Simple_repeat Simple_repeat 2 80 0 4 959 801 228 75 33 chr3 49032246 49032459 -110567324 - ORR1D2 LTR MaLR 0 370 149 4 959 325 154 43 11 chr3 49032469 49032561 -110567222 + GA-rich Low_complexity Low_complexity 1 95 0 5 959 632 267 28 6 chr3 49032561 49032738 -110567045 - ORR1D2 LTR MaLR -193 181 1 4 959 222 37 0 0 chr3 49033632 49033659 -110566124 + (CA)n Simple_repeat Simple_repeat 2 28 0 5 959 490 311 84 132 chr3 49034014 49034310 -110565473 + B4 SINE B4 5 286 -6 5 959 1340 60 4 0 chr3 49034625 49034858 -110564925 + (GAAA)n Simple_repeat Simple_repeat 1 234 0 5 959 598 363 53 15 chr3 49035821 49036084 -110563699 - B4A SINE B4 -12 280 8 5 959 507 33 0 0 chr3 49036107 49036168 -110563615 + (TA)n Simple_repeat Simple_repeat 2 62 0 5 959 222 324 141 21 chr3 49036594 49036786 -110562997 - L2 LINE L2 -829 2590 2376 5 959 781 313 77 46 chr3 49036985 49037310 -110562473 + MTD LTR MaLR 49 383 -36 5 959 232 118 0 0 chr3 49037336 49037370 -110562413 - RMER5 LTR ERV1 -275 259 226 5 959 2008 95 52 30 chr3 49037375 49037736 -110562047 - RLTR13C2 LTR ERVK 0 983 447 5 959 3211 88 24 9 chr3 49037917 49038377 -110561406 + RLTR13C2 LTR ERVK 1 467 -341 6 959 455 60 48 19 chr3 49038537 49038640 -110561143 + (TC)n Simple_repeat Simple_repeat 1 106 0 6 959 22 0 0 0 chr3 49039303 49039325 -110560458 + AT_rich Low_complexity Low_complexity 1 22 0 6 959 207 69 0 0 chr3 49039495 49039524 -110560259 + (TG)n Simple_repeat Simple_repeat 2 30 0 6 959 220 53 53 0 chr3 49039590 49039628 -110560155 + (TA)n Simple_repeat Simple_repeat 1 40 0 6 959 477 202 99 31 chr3 49039836 49039998 -110559785 + ORR1A4 LTR MaLR 2 221 -163 6 959 3975 93 6 69 chr3 49039998 49040635 -110559148 - L1_Mm LINE L1 -63 5820 5224 6 959 925 191 85 0 chr3 49040640 49040829 -110558954 + ORR1A4 LTR MaLR 125 329 0 6 959 477 110 0 0 chr3 49040960 49041033 -110558750 + (CA)n Simple_repeat Simple_repeat 2 74 0 6 959 3153 239 22 36 chr3 49041269 49042023 -110557760 - Lx2B LINE L1 -171 7525 6523 6 959 1634 202 5 50 chr3 49042012 49042428 -110557355 - L1_Mur3 LINE L1 -1120 4760 4364 7 959 4565 91 5 8 chr3 49042437 49043078 -110556705 - L1_Mus3 LINE L1 -6 6632 5994 7 959 1125 178 4 22 chr3 49043078 49043299 -110556484 - L1_Mm LINE L1 -501 5382 5166 7 959 566 235 112 0 chr3 49043323 49043502 -110556281 - L1_Mur3 LINE L1 -1609 4271 4073 7 959 259 289 26 13 chr3 49043598 49043675 -110556108 + ID4_ SINE ID 3 80 -3 7 959 349 354 69 7 chr3 49043693 49043838 -110555945 + RSINE1 SINE B4 2 155 -10 7 959 1811 203 34 78 chr3 49044424 49045011 -110554772 - RLTR31_Mm LTR ERVK 0 561 1 7 959 359 290 60 14 chr3 49045096 49045410 -110554373 - L1MCa LINE L1 -2689 3632 3282 7 959 344 288 156 40 chr3 49045474 49045724 -110554059 - L1MCa LINE L1 -4088 2420 2142 7 959 26 64 0 0 chr3 49045909 49045956 -110553827 + AT_rich Low_complexity Low_complexity 1 47 0 7 959 265 322 40 40 chr3 49046295 49046573 -110553210 - L1MCa LINE L1 -5197 1311 1034 7 959 2155 197 2 0 chr3 49046777 49047184 -110552599 + L1_Mur1 LINE L1 4687 5094 -792 7 959 3376 197 71 9 chr3 49047178 49047981 -110551802 - Lx2B LINE L1 -614 6386 5531 6 959 2055 235 85 28 chr3 49047974 49048513 -110551270 + Lx2B LINE L1 6418 6987 -13 6 959 338 346 70 0 chr3 49048737 49048893 -110550890 - MLT1A LTR MaLR -183 191 25 7 959 334 310 173 23 chr3 49048964 49049261 -110550522 - MLT1A-int LTR MaLR -814 595 254 7 959 198 0 0 0 chr3 49050207 49050229 -110549554 + (CAAAAA)n Simple_repeat Simple_repeat 2 23 0 8 959 189 0 0 0 chr3 49050478 49050499 -110549284 + (CA)n Simple_repeat Simple_repeat 1 21 0 8 959 220 184 26 26 chr3 49050501 49050579 -110549204 + (CAGAGA)n Simple_repeat Simple_repeat 6 83 0 8 959 528 16 0 0 chr3 49050746 49050807 -110548976 + (TA)n Simple_repeat Simple_repeat 2 62 0 8 959 306 321 97 0 chr3 49051232 49051366 -110548417 - MLT1A LTR MaLR -12 615 469 7 959 313 319 93 10 chr3 49051516 49051709 -110548074 - Tigger7 DNA MER2_type -31 2460 2252 8 959 287 363 50 19 chr3 49051897 49052057 -110547726 - MLT1A LTR MaLR -443 184 20 7 959 23 78 0 0 chr3 49052297 49052348 -110547435 + AT_rich Low_complexity Low_complexity 1 51 0 8 959 306 0 0 0 chr3 49053427 49053461 -110546322 + (TG)n Simple_repeat Simple_repeat 2 35 0 8 959 4964 78 1 3 chr3 49054604 49055269 -110544514 - L1_Mus1 LINE L1 0 6567 5904 8 959 4701 90 1 8 chr3 49055271 49055987 -110543796 + L1_Mus1 LINE L1 5188 5901 -666 8 959 244 306 153 0 chr3 49056056 49056128 -110543655 - B3 SINE B2 -118 98 16 8 959 749 190 22 33 chr3 49056153 49056333 -110543450 + Lx7 LINE L1 4238 4415 -1465 8 959 419 214 45 36 chr3 49056322 49056461 -110543322 - L1_Mus3 LINE L1 -640 5998 5880 9 959 516 61 0 0 chr3 49056458 49056524 -110543259 - L1_Mus4 LINE L1 -709 5927 5862 9 959 3540 228 22 7 chr3 49056539 49057362 -110542421 + Lx7 LINE L1 4825 5659 -221 8 959 2671 273 69 120 chr3 49057360 49058058 -110541725 + Lx7 LINE L1 5880 6625 -1071 8 959 1962 199 44 15 chr3 49058058 49058465 -110541318 + MTC LTR MaLR 3 421 0 9 959 2671 273 69 120 chr3 49058465 49058589 -110541194 + Lx7 LINE L1 6626 6752 -944 8 959 765 0 0 0 chr3 49058589 49058674 -110541109 + (GGAA)n Simple_repeat Simple_repeat 2 86 0 9 959 2449 113 8 8 chr3 49058674 49059041 -110540742 - RLTR9A LTR ERVK -1 367 1 9 959 1466 28 6 0 chr3 49059042 49059221 -110540562 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 9 959 2671 271 45 59 chr3 49059221 49059890 -110539893 + Lx7 LINE L1 6753 7299 -161 8 959 261 57 0 0 chr3 49059890 49059925 -110539858 + (TTGG)n Simple_repeat Simple_repeat 4 38 0 9 959 1160 76 0 0 chr3 49059925 49060070 -110539713 - B1_Mus1 SINE Alu -2 146 2 9 959 1477 162 4 3 chr3 49060086 49060340 -110539443 - L1_Mus3 LINE L1 -800 5356 5080 9 959 7283 101 10 12 chr3 49060337 49061631 -110538152 + L1_Mus3 LINE L1 5352 6638 0 9 959 429 20 0 0 chr3 49061652 49061702 -110538081 + (TGAA)n Simple_repeat Simple_repeat 3 52 0 9 959 1023 113 0 0 chr3 49061802 49061944 -110537839 - B1_Mus1 SINE Alu 0 148 7 1 959 30 45 0 0 chr3 49062232 49062276 -110537507 + AT_rich Low_complexity Low_complexity 1 44 0 1 959 1086 108 0 0 chr3 49062741 49062889 -110536894 + B1_Mus1 SINE Alu 1 148 0 1 959 240 86 0 0 chr3 49062901 49062936 -110536847 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1 959 252 0 0 0 chr3 49062968 49062996 -110536787 + (TA)n Simple_repeat Simple_repeat 2 29 0 1 959 2377 151 5 2 chr3 49063287 49063691 -110536092 - Lx LINE L1 -5 6649 6245 1 959 22 0 0 0 chr3 49064532 49064554 -110535229 + AT_rich Low_complexity Low_complexity 1 22 0 1 959 25 0 0 0 chr3 49064657 49064682 -110535101 + AT_rich Low_complexity Low_complexity 1 25 0 1 959 220 214 11 35 chr3 49064958 49065010 -110534773 + (TAAA)n Simple_repeat Simple_repeat 1 52 0 1 959 1862 138 41 35 chr3 49065010 49065349 -110534434 + Lx3A LINE L1 6635 6975 -6 1 959 220 214 11 35 chr3 49065349 49065383 -110534400 + (TAAA)n Simple_repeat Simple_repeat 1 33 0 1 959 21 0 0 0 chr3 49067440 49067461 -110532322 + AT_rich Low_complexity Low_complexity 1 21 0 1 959 280 359 8 8 chr3 49067946 49068078 -110531705 + Lx8 LINE L1 7140 7271 -202 1 959 389 324 87 35 chr3 49068163 49068566 -110531217 - L1M2 LINE L1 -1323 4820 4397 1 959 207 0 0 0 chr3 49068596 49068619 -110531164 + (TG)n Simple_repeat Simple_repeat 2 24 0 1 959 37456 17 3 7 chr3 49070760 49075901 -110523882 + L1Md_A LINE L1 476 5586 -297 1 959 8766 16 0 0 chr3 49075901 49076896 -110522887 + L1Md_A LINE L1 5587 6581 -1 1 959 403 240 24 8 chr3 49077172 49077298 -110522485 - Lx9 LINE L1 -2 7642 7515 1 959 234 174 0 0 chr3 49077361 49077407 -110522376 + (TATATG)n Simple_repeat Simple_repeat 3 48 0 1 959 1343 264 27 18 chr3 49077477 49077813 -110521970 + Lx9 LINE L1 6368 6706 -938 1 959 539 336 101 8 chr3 49078299 49078557 -110521226 + MLT1L LTR MaLR 37 318 -292 1 959 231 232 107 25 chr3 49078975 49079020 -110520763 + Lx9 LINE L1 7464 7508 -136 1 959 594 109 0 0 chr3 49079020 49079121 -110520662 + (CA)n Simple_repeat Simple_repeat 2 102 0 1 959 231 232 107 25 chr3 49079121 49079234 -110520549 + Lx9 LINE L1 7509 7635 -9 1 959 267 346 134 43 chr3 49080325 49080512 -110519271 + MLT1G1 LTR MaLR 93 296 -283 1 959 378 278 111 60 chr3 49081285 49081799 -110517984 - L1M3 LINE L1 -394 5774 5224 1 959 1508 26 10 10 chr3 49081799 49081994 -110517789 + L1Md_F3 LINE L1 6390 6584 0 1 959 378 326 63 81 chr3 49081994 49082629 -110517154 - L1M3 LINE L1 -917 5223 4620 1 959 224 59 29 0 chr3 49082708 49082742 -110517041 + (TTA)n Simple_repeat Simple_repeat 3 37 0 1 959 3513 179 3 51 chr3 49082755 49083462 -110516321 - Lx3C LINE L1 -7 6969 6297 1 959 266 256 22 0 chr3 49083551 49083641 -110516142 - L1M3 LINE L1 -1609 4531 4440 1 959 875 101 8 23 chr3 49083741 49083873 -110515910 - B1_Mm SINE Alu 0 147 18 1 959 27 0 0 0 chr3 49083887 49083914 -110515869 + AT_rich Low_complexity Low_complexity 1 27 0 1 959 260 294 59 4 chr3 49085983 49086073 -110513710 + PB1 SINE Alu 5 109 -8 1 959 27 0 0 0 chr3 49087131 49087158 -110512625 + AT_rich Low_complexity Low_complexity 1 27 0 1 959 483 63 0 0 chr3 49087844 49087907 -110511876 + (CCCCCT)n Simple_repeat Simple_repeat 6 68 0 1 959 1287 164 0 4 chr3 49087907 49088133 -110511650 - Lx LINE L1 -4 6650 6426 1 959 3457 106 2 37 chr3 49088134 49088600 -110511183 + MusHAL1 LINE L1 1354 1800 -912 1 959 183 42 0 0 chr3 49088600 49088624 -110511159 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 1 959 3457 106 2 37 chr3 49088624 49088726 -110511057 + MusHAL1 LINE L1 1801 1902 -810 1 959 614 284 95 14 chr3 49088726 49088947 -110510836 + Tigger1 DNA MER2_type 165 403 -2015 1 959 1562 289 192 21 chr3 49088949 49089788 -110509995 + Tigger1 DNA MER2_type 589 1570 -848 1 959 27 0 0 0 chr3 49090790 49090817 -110508966 + AT_rich Low_complexity Low_complexity 1 27 0 1 959 697 234 54 0 chr3 49091462 49091646 -110508137 + Lx9 LINE L1 7261 7454 -190 1 959 465 84 0 0 chr3 49091646 49091717 -110508066 + (TG)n Simple_repeat Simple_repeat 1 71 0 1 959 260 350 112 11 chr3 49092821 49093000 -110506783 + MIRb SINE MIR 58 254 -14 1 959 370 0 0 39 chr3 49093170 49093222 -110506561 + (TTTTG)n Simple_repeat Simple_repeat 1 50 0 1 959 512 324 143 45 chr3 49093238 49093461 -110506322 + MTEa LTR MaLR 6 250 -129 1 959 504 0 0 0 chr3 49093757 49093813 -110505970 + (CA)n Simple_repeat Simple_repeat 1 56 0 1 959 357 185 0 0 chr3 49094025 49094079 -110505704 - Lx9 LINE L1 -1728 5916 5863 1 959 350 269 36 71 chr3 49094891 49095003 -110504780 - ID_B1 SINE B4 -17 207 100 1 959 244 326 57 23 chr3 49095033 49095121 -110504662 - B1F2 SINE Alu -45 104 14 1 959 1186 7 14 0 chr3 49095814 49095957 -110503826 + (TAGA)n Simple_repeat Simple_repeat 1 145 0 1 959 2676 49 17 0 chr3 49095957 49096185 -110503598 + IAPEY2_LTR LTR ERVK 2 229 -128 1 959 5206 52 3 3 chr3 49096185 49096838 -110502945 + L1Md_F2 LINE L1 5930 6582 0 1 959 2676 49 17 0 chr3 49096838 49096956 -110502827 + IAPEY2_LTR LTR ERVK 230 352 -5 1 959 7913 134 60 54 chr3 49096956 49097433 -110502350 + IAPEY3-int LTR ERVK 17 618 -7062 1 959 235 75 0 36 chr3 49097433 49097488 -110502295 + L1Md_F2 LINE L1 6530 6582 0 1 959 7913 134 60 54 chr3 49097488 49098565 -110501218 + IAPEY3-int LTR ERVK 619 1982 -5698 1 959 3449 74 9 0 chr3 49098545 49098989 -110500794 + IAPEY3-int LTR ERVK 2242 2689 -4991 1 959 203 368 44 0 chr3 49099004 49099118 -110500665 + L3b LINE CR1 335 453 -29 1 959 4812 63 74 1 chr3 49099118 49099766 -110500017 + IAPEY3-int LTR ERVK 6984 7678 -2 1 959 2735 56 32 0 chr3 49099768 49099796 -110499987 + IAPEY2_LTR LTR ERVK 1 28 -329 1 959 333 0 0 0 chr3 49099796 49099833 -110499950 + (TG)n Simple_repeat Simple_repeat 1 37 0 1 959 2735 56 32 0 chr3 49099833 49100146 -110499637 + IAPEY2_LTR LTR ERVK 29 352 -5 1 959 634 53 10 10 chr3 49100146 49100242 -110499541 + (TAGA)n Simple_repeat Simple_repeat 3 98 0 1 959 1230 100 0 0 chr3 49100396 49100576 -110499207 + (CA)n Simple_repeat Simple_repeat 1 180 0 1 959 1022 96 7 7 chr3 49100695 49100842 -110498941 + B1_Mus2 SINE Alu 1 147 0 1 959 212 163 0 0 chr3 49100842 49100885 -110498898 + A-rich Low_complexity Low_complexity 1 43 0 1 959 267 54 0 0 chr3 49101189 49101226 -110498557 + (TC)n Simple_repeat Simple_repeat 1 37 0 1 959 4523 135 81 18 chr3 49101229 49101997 -110497786 - Lx2A LINE L1 -13 6995 6180 1 959 932 100 42 28 chr3 49102019 49102163 -110497620 + B1_Mus1 SINE Alu 1 146 -2 1 959 695 232 0 113 chr3 49102461 49102709 -110497074 + URR1B DNA MER1_type 5 224 -1 1 959 2262 76 7 0 chr3 49102760 49103062 -110496721 - L1Md_F2 LINE L1 -12 6570 6267 1 959 24346 113 23 21 chr3 49103067 49107424 -110492359 - L1Md_F2 LINE L1 -1312 4571 217 1 959 492 330 24 0 chr3 49108888 49109094 -110490689 + ID_B1 SINE B4 1 211 -13 1 959 225 268 122 10 chr3 49109646 49109744 -110490039 + Lx7 LINE L1 6675 6783 -913 1 959 321 190 38 204 chr3 49109783 49109915 -110489868 + L1VL1 LINE L1 253 362 -6060 1 959 288 0 0 0 chr3 49110021 49110053 -110489730 + (TG)n Simple_repeat Simple_repeat 1 32 0 1 959 22 56 0 0 chr3 49110139 49110175 -110489608 + AT_rich Low_complexity Low_complexity 1 36 0 1 959 1019 82 0 7 chr3 49110973 49111121 -110488662 + (GAAA)n Simple_repeat Simple_repeat 4 150 0 1 959 2385 89 14 44 chr3 49111126 49111491 -110488292 - IAPEY2_LTR LTR ERVK -3 354 1 1 959 684 132 0 0 chr3 49111749 49111878 -110487905 + (CA)n Simple_repeat Simple_repeat 2 130 0 1 959 206 79 0 50 chr3 49113134 49113174 -110486609 + (TAA)n Simple_repeat Simple_repeat 3 40 0 1 959 552 30 0 0 chr3 49113358 49113424 -110486359 + (TTCC)n Simple_repeat Simple_repeat 4 69 0 1 959 601 12 37 0 chr3 49113661 49113742 -110486041 + (TCTA)n Simple_repeat Simple_repeat 3 86 0 1 959 204 274 16 0 chr3 49113827 49113889 -110485894 + CT-rich Low_complexity Low_complexity 2 64 0 1 959 216 0 0 0 chr3 49114271 49114295 -110485488 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 1 959 259 81 0 0 chr3 49114535 49114572 -110485211 + L1_Mus3 LINE L1 6566 6602 -36 1 959 2645 55 6 13 chr3 49114900 49115237 -110484546 + L1_Mm LINE L1 5273 5586 -297 1 959 8477 30 3 0 chr3 49115237 49116230 -110483553 + L1Md_F3 LINE L1 5588 6583 -1 1 959 2645 49 0 6 chr3 49116230 49116241 -110483542 + L1_Mm LINE L1 5587 5597 -286 1 959 260 111 0 18 chr3 49116465 49116520 -110483263 + (TTTTTG)n Simple_repeat Simple_repeat 4 57 0 1 959 22 0 0 0 chr3 49117965 49117987 -110481796 + AT_rich Low_complexity Low_complexity 1 22 0 1 959 2890 38 0 0 chr3 49117999 49118343 -110481440 - L1Md_T LINE L1 -4 6578 6235 1 959 504 227 0 0 chr3 49118345 49118464 -110481319 + (TATATG)n Simple_repeat Simple_repeat 3 121 0 1 959 339 212 0 0 chr3 49118496 49118581 -110481202 + (TA)n Simple_repeat Simple_repeat 1 85 0 1 959 761 0 0 11 chr3 49118725 49118815 -110480968 + (TTTTG)n Simple_repeat Simple_repeat 2 90 0 1 959 930 146 0 0 chr3 49118815 49118952 -110480831 - B1_Mus2 SINE Alu -10 137 1 1 959 282 345 40 13 chr3 49119126 49119276 -110480507 - RLTR31A_Mm LTR ERVK -47 514 361 1 959 5644 129 18 3 chr3 49119349 49120255 -110479528 - Lx3_Mus LINE L1 -4 7005 6087 1 959 4972 110 1 8 chr3 49120259 49121003 -110478780 + L1_Mur1 LINE L1 4885 5623 -263 1 959 648 153 16 14 chr3 49121090 49121234 -110478549 - RLTR31A_Mm LTR ERVK -246 338 175 1 959 4722 157 70 12 chr3 49121234 49121588 -110478195 + Lx3A LINE L1 1673 2038 -3839 1 959 342 0 0 0 chr3 49121588 49121626 -110478157 + (TC)n Simple_repeat Simple_repeat 1 38 0 1 959 408 40 0 0 chr3 49121626 49121675 -110478108 + (CA)n Simple_repeat Simple_repeat 1 50 0 1 959 4722 157 70 12 chr3 49121675 49122295 -110477488 + Lx3A LINE L1 2039 2703 -3174 1 959 7122 174 18 27 chr3 49122294 49124206 -110475577 + Lx3A LINE L1 3545 5371 -515 1 959 7372 126 12 21 chr3 49124217 49125405 -110474378 + Lx3A LINE L1 5750 6926 -55 1 959 5897 191 42 63 chr3 49125405 49126953 -110472830 + Lx4A LINE L1 5439 6930 -128 1 959 831 21 0 0 chr3 49126953 49127050 -110472733 + (TG)n Simple_repeat Simple_repeat 1 97 0 1 959 5897 181 46 50 chr3 49127050 49127097 -110472686 + Lx4A LINE L1 6931 6984 -74 1 959 2968 81 0 0 chr3 49127381 49127774 -110472009 - L1_Mus1 LINE L1 0 6567 6175 1 959 24 67 0 0 chr3 49128131 49128176 -110471607 + AT_rich Low_complexity Low_complexity 1 45 0 1 959 1071 98 0 0 chr3 49128179 49128322 -110471461 - B1_Mus1 SINE Alu -5 143 1 1 959 1185 276 96 52 chr3 49128359 49128818 -110470965 + Lx6 LINE L1 6982 7460 0 1 959 579 132 0 0 chr3 49129287 49129401 -110470382 + (TCTA)n Simple_repeat Simple_repeat 4 117 0 1 959 3302 41 5 0 chr3 49129862 49130256 -110469527 + MTA_Mm LTR MaLR 1 396 0 1 959 8054 49 48 4 chr3 49130256 49131307 -110468476 + MTA_Mm-int LTR MaLR 1 1098 0 1 959 3339 38 5 0 chr3 49131307 49131701 -110468082 + MTA_Mm LTR MaLR 1 396 0 1 959 23 86 0 0 chr3 49131923 49131981 -110467802 + AT_rich Low_complexity Low_complexity 1 58 0 1 959 6290 64 2 2 chr3 49133363 49134174 -110465609 + L1Md_F2 LINE L1 5772 6582 0 1 959 186 43 0 0 chr3 49134558 49134581 -110465202 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1 959 22 70 0 0 chr3 49134943 49134986 -110464797 + AT_rich Low_complexity Low_complexity 1 43 0 2 959 444 140 19 9 chr3 49135617 49135725 -110464058 + (TA)n Simple_repeat Simple_repeat 2 110 0 2 959 240 35 0 0 chr3 49136018 49136047 -110463736 + (TA)n Simple_repeat Simple_repeat 1 29 0 2 959 375 78 0 0 chr3 49136417 49136468 -110463315 + (CA)n Simple_repeat Simple_repeat 1 51 0 2 959 941 97 0 0 chr3 49136936 49137060 -110462723 + L1_Mus4 LINE L1 6141 6264 -372 2 959 2602 186 14 8 chr3 49138091 49138580 -110461203 - RLTR20D LTR ERVK -75 493 2 2 959 255 298 35 35 chr3 49138646 49138714 -110461069 - RMER12 LTR ERVK -486 836 768 2 959 324 70 0 0 chr3 49138714 49138757 -110461026 + (TG)n Simple_repeat Simple_repeat 2 44 0 2 959 255 298 35 35 chr3 49138757 49138775 -110461008 - RMER12 LTR ERVK -555 767 750 2 959 3171 149 46 16 chr3 49140155 49140721 -110459062 - MT2B LTR ERVL -1 600 18 2 959 28 86 0 0 chr3 49141410 49141480 -110458303 + AT_rich Low_complexity Low_complexity 1 70 0 2 959 2876 48 11 0 chr3 49141483 49141837 -110457946 - L1Md_F3 LINE L1 -10 6574 6217 2 959 273 169 0 0 chr3 49142087 49142146 -110457637 + (TG)n Simple_repeat Simple_repeat 2 60 0 2 959 1018 116 0 0 chr3 49142533 49142680 -110457103 + B1_Mus1 SINE Alu 2 148 0 2 959 5350 52 1 0 chr3 49142837 49143505 -110456278 - L1Md_F2 LINE L1 0 6582 5914 2 959 4785 56 2 2 chr3 49144109 49144718 -110455065 + L1Md_F2 LINE L1 4978 5586 -297 2 959 6603 41 141 2 chr3 49144719 49145582 -110454201 + L1Md_F2 LINE L1 5588 6570 -12 2 959 21 36 0 0 chr3 49146388 49146416 -110453367 + AT_rich Low_complexity Low_complexity 1 28 0 2 959 308 200 0 0 chr3 49146422 49146472 -110453311 - HAL1-3A_ME LINE L1 -835 2023 1974 2 959 548 124 9 0 chr3 49146788 49146893 -110452890 + (CA)n Simple_repeat Simple_repeat 2 107 0 2 959 309 132 33 0 chr3 49147453 49147532 -110452251 + T-rich Low_complexity Low_complexity 14 95 0 2 959 1084 68 0 27 chr3 49147532 49147682 -110452101 - B1_Mm SINE Alu -1 146 1 2 959 309 132 33 0 chr3 49147682 49147693 -110452090 + T-rich Low_complexity Low_complexity 3 13 0 2 959 664 86 19 0 chr3 49148567 49148672 -110451111 + (TTCC)n Simple_repeat Simple_repeat 3 109 0 2 959 22 56 0 0 chr3 49148783 49148819 -110450964 + AT_rich Low_complexity Low_complexity 1 36 0 2 959 594 0 0 0 chr3 49148912 49148978 -110450805 + (TCTA)n Simple_repeat Simple_repeat 3 68 0 2 959 465 128 0 0 chr3 49149207 49149293 -110450490 - L1Md_F2 LINE L1 0 6582 6497 2 959 462 319 14 7 chr3 49150529 49150671 -110449112 + B3 SINE B2 63 205 -11 2 960 2643 53 12 14 chr3 49152617 49152962 -110446821 + ORR1A1 LTR MaLR 3 346 0 2 960 209 282 0 25 chr3 49153306 49153386 -110446397 + (CATA)n Simple_repeat Simple_repeat 2 79 0 2 960 327 104 0 0 chr3 49155058 49155106 -110444677 + (TC)n Simple_repeat Simple_repeat 1 48 0 2 960 942 300 71 63 chr3 49155322 49156079 -110443704 - Lx9 LINE L1 -19 7625 6863 2 960 424 317 42 69 chr3 49158043 49158260 -110441523 - MTEb LTR MaLR -147 232 22 2 960 456 275 16 24 chr3 49159108 49159231 -110440552 - B1_Mur3 SINE Alu -21 128 7 2 960 218 369 16 32 chr3 49159124 49159250 -110440533 - ID_B1 SINE B4 -31 193 70 2 960 378 0 0 0 chr3 49159266 49159308 -110440475 + (TA)n Simple_repeat Simple_repeat 2 43 0 2 960 22 0 0 0 chr3 49159601 49159623 -110440160 + AT_rich Low_complexity Low_complexity 1 22 0 2 960 189 0 0 0 chr3 49161703 49161724 -110438059 + (CAAAA)n Simple_repeat Simple_repeat 3 23 0 2 960 186 67 43 22 chr3 49162630 49162676 -110437107 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 2 960 1963 230 81 10 chr3 49162724 49163241 -110436542 - Lx4B LINE L1 -4 7054 6501 2 960 561 254 53 42 chr3 49163530 49163719 -110436064 - RLTR13D6 LTR ERVK 0 902 712 2 960 2524 212 2 9 chr3 49163719 49164251 -110435532 + ETnERV3-int LTR ERVK 4862 5389 -419 2 960 1583 142 8 0 chr3 49164251 49164498 -110435285 + ETnERV3-int LTR ERVK 5529 5777 -31 2 960 4739 146 20 60 chr3 49164516 49165455 -110434328 + RLTR13D6 LTR ERVK 1 902 0 2 960 774 252 111 0 chr3 49165455 49165653 -110434130 - URR1A DNA MER1_type -5 221 2 2 960 696 107 0 0 chr3 49166338 49166441 -110433342 + (TTCC)n Simple_repeat Simple_repeat 3 105 0 2 960 987 96 7 0 chr3 49166443 49166579 -110433204 - B1_Mm SINE Alu -6 141 5 2 960 236 93 0 44 chr3 49167326 49167371 -110432412 + (TTTC)n Simple_repeat Simple_repeat 2 44 0 2 960 327 272 0 0 chr3 49167840 49167932 -110431851 + RMER1A Other Other 925 1016 -14 2 960 1186 268 75 33 chr3 49168121 49168480 -110431303 - MTD LTR MaLR 0 419 46 2 960 609 320 36 30 chr3 49168493 49168857 -110430926 - ORR1D2 LTR MaLR -4 366 1 2 960 255 236 0 0 chr3 49170443 49170515 -110429268 + (TA)n Simple_repeat Simple_repeat 2 73 0 2 960 32436 71 35 2 chr3 49171602 49177600 -110422183 - L1Md_F2 LINE L1 0 6582 387 2 960 460 361 54 68 chr3 49177629 49177997 -110421786 - MTE2b LTR MaLR -15 364 2 2 960 3632 102 0 28 chr3 49178024 49178559 -110421224 - L1_Mus3 LINE L1 -4 6634 6115 2 960 5307 141 27 1 chr3 49178990 49180361 -110419422 - L1_Mus3 LINE L1 -300 6338 4932 2 960 3702 124 16 0 chr3 49180357 49180977 -110418806 - MusHAL1 LINE L1 -628 2084 1455 2 960 2107 125 9 0 chr3 49180982 49181309 -110418474 - RLTR13D4 LTR ERVK 0 1033 704 2 960 494 268 46 23 chr3 49181769 49181899 -110417884 + ETnERV2-int LTR ERVK 7070 7202 -204 2 960 16987 25 0 0 chr3 49182224 49184991 -110414792 - L1Md_T LINE L1 0 6582 3815 2 960 2686 170 99 30 chr3 49186755 49187331 -110412452 - RLTR13C1 LTR ERVK -367 616 1 2 960 5283 117 14 11 chr3 49187331 49188239 -110411544 - MusHAL1 LINE L1 -1260 1452 542 2 960 1461 145 0 0 chr3 49188237 49188506 -110411277 + L1_Mm LINE L1 1852 2120 -3763 2 960 7513 115 11 1 chr3 49188500 49189720 -110410063 + L1_Mm LINE L1 3206 4437 -1446 2 960 3002 93 0 53 chr3 49189722 49190189 -110409594 + L1Md_F2 LINE L1 6140 6581 -1 2 960 26 30 0 0 chr3 49190197 49190230 -110409553 + AT_rich Low_complexity Low_complexity 1 33 0 2 960 246 284 201 21 chr3 49190250 49190394 -110409389 - MER58B DNA MER1_type 0 341 172 2 960 347 243 123 26 chr3 49190927 49191041 -110408742 - B1F1 SINE Alu -7 142 18 2 960 180 245 0 36 chr3 49191125 49191180 -110408603 - L3 LINE CR1 -4404 85 33 2 960 1421 153 28 24 chr3 49191466 49191721 -110408062 + Lx4A LINE L1 6798 7053 -5 2 960 1503 30 0 4 chr3 49191890 49192119 -110407664 + (GAAA)n Simple_repeat Simple_repeat 1 228 0 2 960 8973 115 37 2 chr3 49192120 49194245 -110405538 + L1_Mus3 LINE L1 4432 6631 -7 2 960 5350 141 17 7 chr3 49194252 49195747 -110404036 - L1VL4 LINE L1 -1797 1762 254 2 960 4208 166 27 7 chr3 49196113 49196857 -110402926 - Lx3A LINE L1 -7 6974 6216 2 960 1900 141 29 0 chr3 49196857 49197197 -110402586 + Lx3B LINE L1 5897 6246 -727 2 960 1059 280 105 18 chr3 49197260 49197868 -110401915 + L1_Mur3 LINE L1 1561 2221 -3659 2 960 1231 224 60 10 chr3 49198157 49198559 -110401224 - L1_Mur3 LINE L1 -1351 4529 4108 2 960 786 280 34 56 chr3 49198858 49198951 -110400832 + Lx9 LINE L1 6802 6899 -745 2 960 2850 47 6 0 chr3 49198951 49199295 -110400488 - ORR1A0 LTR MaLR 0 346 1 2 960 786 280 34 56 chr3 49199295 49199557 -110400226 + Lx9 LINE L1 6900 7149 -495 2 960 585 0 0 0 chr3 49200443 49200508 -110399275 + (TTTA)n Simple_repeat Simple_repeat 2 66 0 2 960 1325 137 0 18 chr3 49200508 49200731 -110399052 - Lx3A LINE L1 -12 6969 6751 2 960 472 191 36 28 chr3 49200731 49200854 -110398929 + RMER17D2 LTR ERVK 1 128 -778 2 960 4744 120 43 6 chr3 49200854 49201673 -110398110 + RMER17A-int LTR ERVK 874 1722 -6 2 960 3934 148 55 35 chr3 49201679 49202169 -110397614 + RMER17D2 LTR ERVK 1 477 -332 2 960 772 55 9 9 chr3 49202169 49202280 -110397503 + (TC)n Simple_repeat Simple_repeat 2 112 0 2 960 3934 148 55 35 chr3 49202280 49202582 -110397201 + RMER17D2 LTR ERVK 478 809 0 2 960 6400 139 28 10 chr3 49202582 49203417 -110396366 - Lx3A LINE L1 -225 6756 5906 2 960 438 69 0 0 chr3 49203417 49203475 -110396308 + (TG)n Simple_repeat Simple_repeat 2 59 0 2 960 6400 122 12 2 chr3 49203475 49204013 -110395770 - Lx3A LINE L1 -1076 5905 5364 2 960 390 393 84 29 chr3 49204054 49204400 -110395383 + MTE2b LTR MaLR 1 365 -14 2 960 228 321 66 82 chr3 49204470 49204592 -110395191 + MTE-int LTR MaLR 55 174 -1406 2 960 7547 62 4 2 chr3 49205507 49207201 -110392582 - L1Md_F3 LINE L1 -1 6583 4887 2 960 357 207 0 0 chr3 49207245 49207332 -110392451 + (TA)n Simple_repeat Simple_repeat 1 87 0 2 960 742 320 52 41 chr3 49208062 49208424 -110391359 + ORR1D2 LTR MaLR 1 366 -4 2 960 1068 287 60 35 chr3 49208417 49208580 -110391203 + MTD LTR MaLR 26 194 -225 2 960 387 0 0 0 chr3 49208580 49208623 -110391160 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 2 960 1068 255 65 30 chr3 49208623 49208840 -110390943 + MTD LTR MaLR 195 401 -18 2 960 383 219 16 24 chr3 49209027 49209153 -110390630 - RMER1B Other Other -16 1050 926 2 960 22 35 0 0 chr3 49209233 49209262 -110390521 + AT_rich Low_complexity Low_complexity 1 29 0 2 960 288 0 0 0 chr3 49209356 49209388 -110390395 + (TC)n Simple_repeat Simple_repeat 2 33 0 2 960 486 49 0 0 chr3 49209389 49209450 -110390333 + (TG)n Simple_repeat Simple_repeat 2 62 0 2 960 276 30 0 0 chr3 49209535 49209568 -110390215 + (TG)n Simple_repeat Simple_repeat 2 34 0 2 960 654 221 115 48 chr3 49211541 49211750 -110388033 + URR1A DNA MER1_type 1 223 -3 2 960 1779 206 53 9 chr3 49212039 49212490 -110387293 + Lx4B LINE L1 6511 6981 -77 2 960 462 36 0 0 chr3 49212534 49212590 -110387193 + (TAAA)n Simple_repeat Simple_repeat 2 57 0 2 960 694 131 8 8 chr3 49212709 49212832 -110386951 - L1_Mur2 LINE L1 -1581 4296 4174 2 960 6566 107 13 10 chr3 49212819 49213847 -110385936 + L1_Mus3 LINE L1 5600 6630 -8 2 960 2328 72 119 11 chr3 49214870 49215222 -110384561 + RLTR10 LTR ERVK 1 390 0 2 960 31604 82 7 3 chr3 49216055 49222275 -110377508 - L1Md_F2 LINE L1 -1 6581 338 2 960 7764 98 11 1 chr3 49222310 49224145 -110375638 + L1_Mus1 LINE L1 4722 6566 -1 2 960 35 0 0 0 chr3 49224145 49224180 -110375603 + AT_rich Low_complexity Low_complexity 1 35 0 2 960 180 0 0 0 chr3 49225254 49225274 -110374509 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 3 960 334 146 0 58 chr3 49225295 49225382 -110374401 - L1Md_F2 LINE L1 -1 6581 6500 3 960 406 259 118 25 chr3 49225826 49225945 -110373838 + B1_Mm SINE Alu 7 136 -11 3 960 216 0 0 0 chr3 49227364 49227388 -110372395 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 3 960 246 62 0 0 chr3 49227814 49227846 -110371937 + (CAG)n Simple_repeat Simple_repeat 1 32 0 3 960 841 292 56 59 chr3 49229038 49229428 -110370355 + Lx9 LINE L1 6863 7251 -393 3 960 38 0 0 0 chr3 49229657 49229695 -110370088 + AT_rich Low_complexity Low_complexity 1 38 0 3 960 27 0 0 0 chr3 49233145 49233172 -110366611 + AT_rich Low_complexity Low_complexity 1 27 0 3 960 351 308 0 46 chr3 49233293 49233402 -110366381 + PB1D10 SINE Alu 13 116 -1 3 960 499 76 44 30 chr3 49233761 49233896 -110365887 + (TTTG)n Simple_repeat Simple_repeat 4 140 0 3 960 2059 114 3 9 chr3 49234560 49234878 -110364905 - IAPLTR2b LTR ERVK -11 316 1 3 960 4312 94 51 16 chr3 49234878 49235524 -110364259 - IAPEz-int LTR ERVK 0 6481 5813 3 960 11749 49 3 0 chr3 49235522 49236941 -110362842 - IAPEz-int LTR ERVK -1057 5424 4001 3 960 13912 119 37 27 chr3 49236939 49239377 -110360406 - IAPEz-int LTR ERVK -3707 2774 1 3 960 1973 103 12 43 chr3 49239389 49239715 -110360068 - IAPLTR2b LTR ERVK -11 316 1 3 960 224 305 202 8 chr3 49240045 49240164 -110359619 - B3 SINE B2 -11 205 64 3 960 27 29 0 0 chr3 49240379 49240413 -110359370 + AT_rich Low_complexity Low_complexity 1 34 0 3 960 240 305 0 38 chr3 49241457 49241608 -110358175 + (CAGAGA)n Simple_repeat Simple_repeat 4 148 0 3 960 501 115 0 0 chr3 49241608 49241686 -110358097 + (TA)n Simple_repeat Simple_repeat 1 78 0 3 960 240 305 0 38 chr3 49241686 49241718 -110358065 + (CAGAGA)n Simple_repeat Simple_repeat 5 36 0 3 960 24 32 0 0 chr3 49241793 49241824 -110357959 + AT_rich Low_complexity Low_complexity 1 31 0 3 960 189 182 0 0 chr3 49242852 49242907 -110356876 + A-rich Low_complexity Low_complexity 1 55 0 3 960 315 136 0 0 chr3 49243124 49243183 -110356600 + (TG)n Simple_repeat Simple_repeat 2 60 0 3 960 189 226 0 0 chr3 49243458 49243511 -110356272 + (CA)n Simple_repeat Simple_repeat 1 53 0 3 960 21 71 0 0 chr3 49243957 49243999 -110355784 + AT_rich Low_complexity Low_complexity 1 42 0 3 960 291 28 0 0 chr3 49244563 49244599 -110355184 + (CA)n Simple_repeat Simple_repeat 2 37 0 3 960 1454 58 5 11 chr3 49245111 49245302 -110354481 + B2_Mm1t SINE B2 1 190 -3 3 960 5222 124 17 4 chr3 49245362 49246177 -110353606 + L1_Mus4 LINE L1 5811 6636 0 3 960 3364 149 26 16 chr3 49246625 49247205 -110352578 + MT2B LTR ERVL 16 601 0 3 960 35318 45 0 3 chr3 49247493 49252732 -110347051 + L1Md_T LINE L1 270 5589 -297 3 960 8444 33 0 0 chr3 49252732 49253728 -110346055 + L1Md_T LINE L1 5590 6585 0 3 960 185 281 85 53 chr3 49254089 49254183 -110345600 + MIRc SINE MIR 58 154 -114 3 960 420 20 0 0 chr3 49254945 49254994 -110344789 + (CA)n Simple_repeat Simple_repeat 2 50 0 3 960 222 132 37 19 chr3 49254995 49255049 -110344734 + (TAGA)n Simple_repeat Simple_repeat 4 58 0 3 960 2588 198 26 6 chr3 49255117 49255610 -110344173 + RLTR20D LTR ERVK 1 503 -65 3 960 31 44 0 0 chr3 49256731 49256776 -110343007 + AT_rich Low_complexity Low_complexity 1 45 0 3 960 552 56 0 0 chr3 49257218 49257290 -110342493 + (TG)n Simple_repeat Simple_repeat 1 72 0 3 960 930 187 25 25 chr3 49257297 49257500 -110342283 - L1_Mur1 LINE L1 -506 5380 5178 3 960 1257 203 197 16 chr3 49257502 49257955 -110341828 - RLTR20A LTR ERVK -3 538 4 3 960 3586 49 20 0 chr3 49257966 49258414 -110341369 + MT2C_Mm LTR ERVL 1 457 -18 3 960 5233 54 0 5 chr3 49258414 49259068 -110340715 + L1Md_F2 LINE L1 5931 6581 -1 3 960 4499 45 0 2 chr3 49259109 49259663 -110340120 + L1Md_F3 LINE L1 6031 6583 -1 3 960 612 85 0 0 chr3 49259672 49259754 -110340029 - L1_Mur1 LINE L1 -730 5156 5075 3 960 263 347 26 10 chr3 49260028 49260220 -110339563 - L1MEf LINE L1 -3255 2891 2697 3 960 227 310 87 19 chr3 49260277 49260484 -110339299 - L1MEf LINE L1 -3585 2561 2341 3 960 247 273 71 0 chr3 49260528 49260627 -110339156 - L1MEf LINE L1 -4006 2236 2131 3 960 3135 100 2 29 chr3 49261716 49262230 -110337553 - MusHAL1 LINE L1 -626 2086 1587 3 960 40525 12 0 6 chr3 49262240 49268627 -110331156 - L1Md_A LINE L1 -1 6581 237 3 960 5960 108 40 7 chr3 49268636 49269593 -110330190 - MusHAL1 LINE L1 -1121 1591 604 3 960 760 176 6 6 chr3 49269593 49269759 -110330024 + CT-rich Low_complexity Low_complexity 4 169 0 3 960 1023 152 0 0 chr3 49269801 49269979 -110329804 + CT-rich Low_complexity Low_complexity 3 180 0 3 960 3872 254 42 30 chr3 49269986 49271076 -110328707 - Lx6 LINE L1 -708 6752 5650 3 960 414 0 0 0 chr3 49271076 49271122 -110328661 + (TG)n Simple_repeat Simple_repeat 2 47 0 3 960 285 125 0 0 chr3 49271139 49271179 -110328604 - tRNA-Val-GTY tRNA tRNA -36 40 1 3 960 718 87 38 30 chr3 49271364 49271495 -110328288 + L1Md_F2 LINE L1 6451 6582 0 3 960 2875 216 62 1 chr3 49271520 49272196 -110327587 - Lx6 LINE L1 -246 5634 4918 3 960 5939 138 45 8 chr3 49272216 49273217 -110326566 - Lx3C LINE L1 -10 6966 5929 3 960 266 162 0 0 chr3 49273230 49273267 -110326516 - Lx3C LINE L1 -1296 5680 5644 3 960 485 233 30 8 chr3 49273266 49273400 -110326383 - Lx6 LINE L1 -1761 4119 3983 3 960 814 179 8 91 chr3 49273413 49273656 -110326127 - RLTR31_Mur LTR ERVK -336 225 1 3 960 5543 199 54 48 chr3 49273657 49274348 -110325435 - Lx6 LINE L1 -1890 3990 3254 3 960 243 0 0 0 chr3 49274348 49274375 -110325408 + (TCTG)n Simple_repeat Simple_repeat 2 28 0 3 960 5543 199 54 48 chr3 49274375 49275115 -110324668 - Lx6 LINE L1 -2627 3253 2548 3 960 4090 153 47 8 chr3 49275115 49275825 -110323958 + RMER19A LTR ERVK 1 737 0 3 960 5543 199 54 48 chr3 49275825 49275966 -110323817 - Lx6 LINE L1 -3333 2547 2407 3 960 13639 153 12 75 chr3 49275968 49277768 -110322015 + L1_Mur2 LINE L1 1960 3747 -2130 3 960 2526 46 30 0 chr3 49277768 49278096 -110321687 - ORR1A0 LTR MaLR -8 338 1 3 960 13639 153 12 75 chr3 49278096 49280012 -110319771 + L1_Mur2 LINE L1 3748 5652 -225 3 14 39302 17 11 1 chr3 49280013 49285784 -110313999 + L1_Mus2 LINE L1 1 5586 -297 3 961 8959 6 0 0 chr3 49285784 49286780 -110313003 + L1Md_A LINE L1 5587 6582 0 3 961 39302 70 27 2 chr3 49286780 49287678 -110312105 + L1_Mus2 LINE L1 5587 6565 -1 3 961 1112 131 89 0 chr3 49287694 49287885 -110311898 + Lx4B LINE L1 3412 3619 -2258 3 961 2647 184 19 9 chr3 49287871 49288575 -110311208 + Lx4B LINE L1 5364 6079 -979 3 961 278 360 86 25 chr3 49289928 49290207 -110309576 - MLT2C1 LTR ERVL -41 356 61 3 961 568 325 114 80 chr3 49290221 49290336 -110309447 + MTE2a LTR MaLR 14 130 -289 3 961 1151 211 0 0 chr3 49290336 49290559 -110309224 - URR1A DNA MER1_type 0 226 4 3 961 568 336 60 57 chr3 49290559 49290767 -110309016 + MTE2a LTR MaLR 97 308 -71 3 961 749 31 10 0 chr3 49291946 49292042 -110307741 + (TC)n Simple_repeat Simple_repeat 2 98 0 3 961 432 37 0 0 chr3 49292042 49292096 -110307687 + (TG)n Simple_repeat Simple_repeat 1 54 0 3 961 846 307 4 4 chr3 49292705 49292950 -110306833 + Lx8 LINE L1 6961 7205 -268 3 961 742 92 16 8 chr3 49293250 49293371 -110306412 + (GGAA)n Simple_repeat Simple_repeat 4 125 0 3 961 202 71 0 0 chr3 49293371 49293399 -110306384 + (GA)n Simple_repeat Simple_repeat 2 29 0 3 961 927 0 0 0 chr3 49293399 49293502 -110306281 + (GAA)n Simple_repeat Simple_repeat 3 105 0 3 961 234 0 0 0 chr3 49294291 49294317 -110305466 + (T)n Simple_repeat Simple_repeat 1 26 0 3 961 486 0 0 0 chr3 49294951 49295005 -110304778 + (CTG)n Simple_repeat Simple_repeat 3 56 0 3 961 531 0 0 0 chr3 49295005 49295064 -110304719 + (TG)n Simple_repeat Simple_repeat 2 60 0 3 961 198 0 0 0 chr3 49295400 49295422 -110304361 + (T)n Simple_repeat Simple_repeat 1 22 0 3 961 636 169 98 23 chr3 49295452 49295585 -110304198 - B1_Mur4 SINE Alu -7 143 1 3 961 509 62 25 0 chr3 49298387 49298468 -110301315 + (TCTCTG)n Simple_repeat Simple_repeat 2 84 0 3 961 22 0 0 0 chr3 49298490 49298512 -110301271 + AT_rich Low_complexity Low_complexity 1 22 0 3 961 1679 152 34 3 chr3 49298512 49298808 -110300975 - Lx LINE L1 -11 6643 6339 3 961 414 295 137 2 chr3 49299475 49299626 -110300157 - B3 SINE B2 -16 182 15 3 961 291 325 71 65 chr3 49300637 49300821 -110298962 + B3A SINE B2 1 185 -13 3 961 395 359 95 50 chr3 49300958 49301336 -110298447 - MLT2B1 LTR ERVL -58 462 68 3 961 2406 64 0 0 chr3 49301881 49302192 -110297591 - Lx3_Mus LINE L1 -823 5063 4753 3 961 8942 90 17 4 chr3 49302193 49303154 -110296629 + Lx3_Mus LINE L1 5067 6043 -966 3 961 831 93 0 0 chr3 49303154 49303272 -110296511 + (GGAA)n Simple_repeat Simple_repeat 1 118 0 3 961 8942 107 28 8 chr3 49303272 49304205 -110295578 + Lx3_Mus LINE L1 6044 6986 -23 3 961 1743 214 67 3 chr3 49304205 49304576 -110295207 - MTD LTR MaLR -9 410 16 3 961 1348 210 147 63 chr3 49304998 49305316 -110294467 + Lx7 LINE L1 7192 7542 -154 3 961 984 18 0 0 chr3 49305316 49305430 -110294353 + (TAG)n Simple_repeat Simple_repeat 3 116 0 3 961 1348 210 147 63 chr3 49305430 49305574 -110294209 + Lx7 LINE L1 7543 7692 -4 3 961 330 369 102 45 chr3 49305874 49306277 -110293506 - L1MEc LINE L1 -5920 480 55 3 961 270 0 0 0 chr3 49306322 49306352 -110293431 + (CA)n Simple_repeat Simple_repeat 2 31 0 3 961 203 299 0 25 chr3 49308060 49308139 -110291644 + CT-rich Low_complexity Low_complexity 2 78 0 3 961 580 183 12 30 chr3 49309164 49309333 -110290450 + GA-rich Low_complexity Low_complexity 2 167 0 3 961 180 0 0 0 chr3 49309578 49309598 -110290185 + (A)n Simple_repeat Simple_repeat 1 20 0 3 961 342 0 0 0 chr3 49310686 49310724 -110289059 + (TG)n Simple_repeat Simple_repeat 2 39 0 3 961 236 165 22 66 chr3 49310810 49310824 -110288959 + A-rich Low_complexity Low_complexity 2 15 0 3 961 804 185 20 0 chr3 49310824 49310970 -110288813 + B1_Mur2 SINE Alu 1 149 0 3 961 236 165 22 66 chr3 49310970 49311046 -110288737 + A-rich Low_complexity Low_complexity 16 87 0 3 961 40 31 0 15 chr3 49312454 49312480 -110287303 + AT_rich Low_complexity Low_complexity 1 26 0 3 961 837 197 22 6 chr3 49312480 49312659 -110287124 - Lx3B LINE L1 -1 6972 6791 3 961 40 31 0 15 chr3 49312659 49312697 -110287086 + AT_rich Low_complexity Low_complexity 1 38 0 3 961 360 103 0 0 chr3 49313629 49313687 -110286096 + (T)n Simple_repeat Simple_repeat 1 58 0 3 961 953 96 73 0 chr3 49313693 49313829 -110285954 - B1_Mus1 SINE Alu -2 146 1 3 961 611 303 124 47 chr3 49313898 49314820 -110284963 + L1M2 LINE L1 4397 5389 -754 3 961 423 0 0 0 chr3 49314944 49314991 -110284792 + (CA)n Simple_repeat Simple_repeat 2 48 0 3 961 371 235 101 10 chr3 49315092 49315191 -110284592 - ORR1E LTR MaLR -250 109 2 3 961 28 0 0 0 chr3 49315216 49315244 -110284539 + AT_rich Low_complexity Low_complexity 1 28 0 3 961 246 128 0 0 chr3 49315278 49315317 -110284466 + (TA)n Simple_repeat Simple_repeat 2 40 0 3 961 234 0 0 0 chr3 49315318 49315344 -110284439 + (CA)n Simple_repeat Simple_repeat 1 26 0 3 961 1363 193 90 10 chr3 49315422 49315710 -110284073 - MTC LTR MaLR -101 320 10 4 961 339 274 34 17 chr3 49316200 49316319 -110283464 + GA-rich Low_complexity Low_complexity 1 121 0 4 961 231 319 110 31 chr3 49316670 49316861 -110282922 - L1MD2 LINE L1 -236 6123 5918 4 961 26 64 0 0 chr3 49316891 49316938 -110282845 + AT_rich Low_complexity Low_complexity 1 47 0 4 961 457 296 102 7 chr3 49317114 49317369 -110282414 - ORR1E LTR MaLR -12 358 2 4 961 28 0 0 0 chr3 49317393 49317421 -110282362 + AT_rich Low_complexity Low_complexity 1 28 0 4 961 213 0 81 0 chr3 49317965 49318002 -110281781 + (TA)n Simple_repeat Simple_repeat 2 41 0 4 961 203 125 25 0 chr3 49318349 49318389 -110281394 + (TTTC)n Simple_repeat Simple_repeat 4 44 0 4 961 794 271 20 5 chr3 49319005 49319205 -110280578 - B3 SINE B2 -12 204 2 4 961 661 101 34 0 chr3 49319217 49319336 -110280447 + (TATG)n Simple_repeat Simple_repeat 1 123 0 4 961 607 262 0 45 chr3 49319336 49319492 -110280291 - B3A SINE B2 -49 149 1 4 961 372 191 11 0 chr3 49320203 49320292 -110279491 - Lx LINE L1 -3 6651 6562 4 961 9113 93 11 9 chr3 49320473 49321835 -110277948 - Lx3A LINE L1 -1042 5939 4571 4 961 5326 128 26 23 chr3 49321835 49322751 -110277032 + Lx3A LINE L1 6059 6977 -4 4 961 1089 115 0 0 chr3 49322756 49322904 -110276879 + B1_Mus1 SINE Alu 1 148 0 4 961 221 109 22 0 chr3 49322914 49322960 -110276823 + (TAAAAA)n Simple_repeat Simple_repeat 4 50 0 4 961 192 135 0 0 chr3 49324432 49324469 -110275314 + (T)n Simple_repeat Simple_repeat 1 37 0 4 961 24 32 0 0 chr3 49324543 49324574 -110275209 + AT_rich Low_complexity Low_complexity 1 31 0 4 961 268 268 259 30 chr3 49324574 49324705 -110275078 - RSINE1 SINE B4 0 165 5 4 961 2009 299 53 15 chr3 49325539 49326273 -110273510 + RCHARR1 DNA MER1_type 146 907 -67 4 961 2024 116 56 6 chr3 49326277 49326597 -110273186 + L1_Mus4 LINE L1 6294 6629 -7 4 961 915 175 56 41 chr3 49326799 49326996 -110272787 - ORR1C1 LTR MaLR 0 378 179 4 961 603 0 0 0 chr3 49326998 49327065 -110272718 + (TG)n Simple_repeat Simple_repeat 1 67 0 4 961 309 51 0 0 chr3 49327065 49327103 -110272680 + (CG)n Simple_repeat Simple_repeat 1 39 0 4 961 281 198 11 0 chr3 49327128 49327219 -110272564 + GA-rich Low_complexity Low_complexity 2 93 0 4 961 746 243 11 16 chr3 49327219 49327407 -110272376 - ORR1C1 LTR MaLR -191 187 1 4 961 270 0 0 0 chr3 49328031 49328061 -110271722 + (TG)n Simple_repeat Simple_repeat 2 31 0 4 961 219 69 0 0 chr3 49328530 49328559 -110271224 + (TA)n Simple_repeat Simple_repeat 1 29 0 4 961 682 206 0 0 chr3 49328652 49328788 -110270995 + MTC LTR MaLR 207 342 -79 4 961 814 133 60 12 chr3 49328791 49328959 -110270824 + L1_Mus4 LINE L1 6449 6624 -12 4 961 337 253 0 0 chr3 49328976 49329051 -110270732 + MTC LTR MaLR 337 411 -10 4 961 1734 49 22 17 chr3 49329764 49329994 -110269789 - L1Md_F2 LINE L1 -2 6580 6350 4 961 6034 21 21 0 chr3 49329994 49330699 -110269084 + L1Md_F2 LINE L1 5631 6350 -232 4 961 313 301 42 75 chr3 49331423 49331635 -110268148 + LTR37A LTR ERV1 87 291 -135 4 961 364 280 32 83 chr3 49332724 49332902 -110266881 - B3A SINE B2 -4 194 19 4 961 240 254 41 66 chr3 49333406 49333528 -110266255 - Charlie1 DNA MER1_type -53 2728 2610 4 961 660 150 0 0 chr3 49333716 49333829 -110265954 + GA-rich Low_complexity Low_complexity 4 116 0 4 961 22 0 0 0 chr3 49334214 49334236 -110265547 + AT_rich Low_complexity Low_complexity 1 22 0 4 961 861 38 0 0 chr3 49334236 49334341 -110265442 + (TG)n Simple_repeat Simple_repeat 2 106 0 4 961 259 128 58 0 chr3 49335370 49335456 -110264327 + (TA)n Simple_repeat Simple_repeat 2 92 0 4 961 331 330 10 41 chr3 49335513 49335611 -110264172 - B1F SINE Alu -27 100 6 4 961 277 357 42 21 chr3 49335883 49336026 -110263757 - MTE2b LTR MaLR 0 379 234 4 961 1490 94 5 0 chr3 49336241 49336453 -110263330 + L1_Mus2 LINE L1 6348 6560 -6 4 961 24 32 0 0 chr3 49336536 49336567 -110263216 + AT_rich Low_complexity Low_complexity 1 31 0 4 961 410 370 62 4 chr3 49337142 49337367 -110262416 + B4A SINE B4 49 286 -6 4 961 279 0 0 0 chr3 49337375 49337406 -110262377 + (CA)n Simple_repeat Simple_repeat 2 32 0 4 961 189 0 0 0 chr3 49337800 49337821 -110261962 + (TTTTTG)n Simple_repeat Simple_repeat 2 22 0 4 961 2522 56 3 0 chr3 49338401 49338725 -110261058 - L1Md_F2 LINE L1 0 6582 6258 4 961 513 0 0 0 chr3 49339693 49339750 -110260033 + (TTTA)n Simple_repeat Simple_repeat 3 59 0 4 961 387 0 0 0 chr3 49339752 49339795 -110259988 + (TG)n Simple_repeat Simple_repeat 1 43 0 4 961 320 299 102 9 chr3 49339823 49339931 -110259852 - RSINE1 SINE B4 -44 121 4 4 961 507 33 0 0 chr3 49340241 49340302 -110259481 + (TAGA)n Simple_repeat Simple_repeat 2 62 0 4 961 566 313 88 23 chr3 49340640 49340856 -110258927 - B4 SINE B4 -61 231 2 4 961 330 63 62 12 chr3 49340858 49340938 -110258845 + (TA)n Simple_repeat Simple_repeat 1 84 0 4 961 564 320 6 55 chr3 49341839 49342021 -110257762 + B3A SINE B2 26 198 0 4 961 2296 64 109 0 chr3 49342235 49342547 -110257236 - ORR1A1 LTR MaLR 0 346 1 4 961 4838 90 27 7 chr3 49342562 49343257 -110256526 - L1_Mus4 LINE L1 -2 6634 5926 4 961 771 79 47 8 chr3 49343253 49343380 -110256403 - Lx LINE L1 -6 6648 6517 4 961 1035 0 0 0 chr3 49343646 49343761 -110256022 + (GAAA)n Simple_repeat Simple_repeat 2 116 0 4 961 239 260 38 25 chr3 49343764 49343805 -110255978 + B4 SINE B4 87 127 -165 4 961 884 18 0 18 chr3 49343805 49343916 -110255867 + (GAAA)n Simple_repeat Simple_repeat 4 112 0 4 961 310 145 57 14 chr3 49343916 49343944 -110255839 + B1_Mur3 SINE Alu 43 74 -75 4 961 208 296 50 34 chr3 49344308 49344427 -110255356 - MIR3 SINE MIR -1 207 87 4 961 359 271 109 147 chr3 49344824 49344980 -110254803 + RSINE1 SINE B4 16 165 0 4 961 368 365 0 0 chr3 49344980 49345125 -110254658 + (CA)n Simple_repeat Simple_repeat 1 145 0 4 961 200 280 0 26 chr3 49345077 49345154 -110254629 + (CAAA)n Simple_repeat Simple_repeat 4 78 0 4 961 186 245 0 45 chr3 49346196 49346307 -110253476 + (CAGAGA)n Simple_repeat Simple_repeat 1 106 0 4 961 1939 248 72 47 chr3 49347144 49347232 -110252551 - Lx9 LINE L1 0 7644 7550 4 961 300 27 0 0 chr3 49347232 49347269 -110252514 + (TC)n Simple_repeat Simple_repeat 2 38 0 4 961 1939 248 72 47 chr3 49347269 49347928 -110251855 - Lx9 LINE L1 -95 7549 6878 4 961 24 32 0 0 chr3 49348490 49348521 -110251262 + AT_rich Low_complexity Low_complexity 1 31 0 4 961 23 54 0 0 chr3 49348758 49348795 -110250988 + AT_rich Low_complexity Low_complexity 1 37 0 4 961 26 50 0 0 chr3 49349044 49349084 -110250699 + AT_rich Low_complexity Low_complexity 1 40 0 4 961 251 350 82 69 chr3 49349105 49349259 -110250524 - Lx8 LINE L1 -94 7379 7211 4 961 4438 156 58 6 chr3 49349259 49350051 -110249732 + Lx4A LINE L1 6226 7058 0 4 961 251 350 82 69 chr3 49350051 49350200 -110249583 - Lx8 LINE L1 -263 7210 7072 4 961 4060 93 2 2 chr3 49350221 49350784 -110248999 - L1_Mus2 LINE L1 -6 6560 5998 4 961 5718 19 6 7 chr3 49350768 49351442 -110248341 - L1Md_A LINE L1 0 6582 5910 4 961 10437 6 0 0 chr3 49351442 49352613 -110247170 + L1Md_A LINE L1 4713 5883 0 4 961 9681 105 16 9 chr3 49352636 49354312 -110245471 - L1_Mus2 LINE L1 -543 6023 4336 4 961 314 109 0 83 chr3 49354305 49354365 -110245418 + L1_Mm LINE L1 5207 5261 -622 4 961 4927 130 37 4 chr3 49354365 49355716 -110244067 + L1_Mus3 LINE L1 4935 6338 -300 4 961 5207 71 25 25 chr3 49355989 49356750 -110243033 + L1_Mm LINE L1 2803 3563 -2320 4 961 243 0 0 0 chr3 49356892 49356919 -110242864 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 4 961 13588 75 2 2 chr3 49357261 49359096 -110240687 - L1_Mm LINE L1 -418 5465 3630 4 961 7445 175 42 4 chr3 49359086 49360507 -110239276 + Lx4A LINE L1 5297 6780 -278 4 961 4161 69 21 16 chr3 49360507 49361068 -110238715 + LTRIS2 LTR ERV1 1 564 0 4 961 7445 181 36 7 chr3 49361068 49361288 -110238495 + Lx4A LINE L1 6781 7012 -46 4 961 482 271 86 27 chr3 49361297 49361517 -110238266 + L1MA4 LINE L1 5696 5928 -372 4 961 417 297 44 6 chr3 49363526 49363660 -110236123 - B1F SINE Alu 0 149 5 4 961 22 35 0 0 chr3 49364693 49364722 -110235061 + AT_rich Low_complexity Low_complexity 1 29 0 4 961 857 309 77 82 chr3 49364975 49365328 -110234455 + ORR1E LTR MaLR 3 353 -6 4 961 22 0 0 0 chr3 49366076 49366098 -110233685 + AT_rich Low_complexity Low_complexity 1 22 0 4 961 875 244 116 10 chr3 49366579 49366873 -110232910 - ORR1D1 LTR MaLR 0 374 50 4 961 1207 240 32 16 chr3 49367146 49367455 -110232328 + ORR1C2-int LTR MaLR 1057 1370 0 4 961 273 241 0 0 chr3 49367457 49367515 -110232268 + ORR1C2 LTR MaLR 3 60 -324 4 961 195 69 0 0 chr3 49368323 49368352 -110231431 + (TTTTTG)n Simple_repeat Simple_repeat 3 31 0 4 961 207 88 0 0 chr3 49368359 49368393 -110231390 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 4 961 39 50 0 0 chr3 49369671 49369731 -110230052 + AT_rich Low_complexity Low_complexity 1 60 0 4 961 737 136 45 8 chr3 49370361 49370494 -110229289 - URR1B DNA MER1_type 0 225 88 4 961 196 295 119 37 chr3 49370824 49370933 -110228850 + L2b LINE L2 3254 3371 -4 4 961 345 226 21 57 chr3 49371859 49372000 -110227783 - Lx9 LINE L1 0 7644 7509 4 961 237 304 18 0 chr3 49372292 49372348 -110227435 + RSINE1 SINE B4 7 63 -102 4 961 1060 21 14 14 chr3 49372363 49372506 -110227277 + (TCTA)n Simple_repeat Simple_repeat 4 146 0 4 961 206 296 0 27 chr3 49372507 49372580 -110227203 + CT-rich Low_complexity Low_complexity 2 72 0 4 961 507 102 0 0 chr3 49372582 49372670 -110227113 + (CATA)n Simple_repeat Simple_repeat 1 88 0 4 961 22 35 0 0 chr3 49372719 49372748 -110227035 + AT_rich Low_complexity Low_complexity 1 29 0 4 961 352 315 154 18 chr3 49372816 49373036 -110226747 - Lx8 LINE L1 -238 7235 6986 4 961 492 313 22 0 chr3 49373434 49373568 -110226215 + U1 snRNA snRNA 5 141 -24 4 961 7865 108 71 7 chr3 49373671 49375477 -110224306 + Lx3A LINE L1 208 2408 -3478 4 961 10497 93 119 124 chr3 49375474 49378781 -110221002 + Lx3A LINE L1 3647 6966 -15 4 961 1181 101 6 0 chr3 49378786 49378965 -110220818 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 5 961 236 284 122 61 chr3 49380105 49380319 -110219464 + Lx8 LINE L1 7226 7452 -21 5 961 2204 47 0 4 chr3 49381612 49381891 -110217892 - L1Md_F2 LINE L1 -2 6580 6303 5 961 210 71 0 0 chr3 49381991 49382019 -110217764 + (TC)n Simple_repeat Simple_repeat 1 28 0 5 961 472 98 21 11 chr3 49382217 49382310 -110217473 - Lx2A LINE L1 -8 7000 6907 5 961 4815 134 42 55 chr3 49382310 49382560 -110217223 + L1_Mur2 LINE L1 3602 3840 -2037 5 961 6228 37 0 4 chr3 49382560 49383312 -110216471 + L1Md_T LINE L1 5834 6582 0 5 961 4815 134 42 55 chr3 49383312 49383985 -110215798 + L1_Mur2 LINE L1 3841 4513 -1364 5 961 21 71 0 0 chr3 49384356 49384398 -110215385 + AT_rich Low_complexity Low_complexity 1 42 0 5 961 25 0 0 0 chr3 49384746 49384771 -110215012 + AT_rich Low_complexity Low_complexity 1 25 0 5 961 26 30 0 0 chr3 49384842 49384875 -110214908 + AT_rich Low_complexity Low_complexity 1 33 0 5 961 311 96 19 0 chr3 49385269 49385321 -110214462 + (TA)n Simple_repeat Simple_repeat 1 53 0 5 961 225 0 0 0 chr3 49385321 49385346 -110214437 + (GA)n Simple_repeat Simple_repeat 2 26 0 5 961 3723 219 40 47 chr3 49385458 49386387 -110213396 + Lx7 LINE L1 6005 6926 -770 5 961 1283 191 11 29 chr3 49386383 49386692 -110213091 + Lx2B LINE L1 6702 6980 -28 5 961 1430 276 25 10 chr3 49386697 49387096 -110212687 + Lx7 LINE L1 6932 7336 -360 5 961 644 214 0 6 chr3 49387126 49387305 -110212478 + CT-rich Low_complexity Low_complexity 1 178 0 5 961 443 214 45 22 chr3 49387445 49387579 -110212204 + Lx7 LINE L1 7559 7695 -1 5 961 414 0 0 0 chr3 49387805 49387851 -110211932 + (GTTTG)n Simple_repeat Simple_repeat 2 47 0 5 961 1120 75 0 13 chr3 49387851 49387991 -110211792 - B1_Mus2 SINE Alu -7 140 1 5 961 22 80 0 0 chr3 49389188 49389238 -110210545 + AT_rich Low_complexity Low_complexity 1 50 0 5 961 21 36 0 0 chr3 49389289 49389317 -110210466 + AT_rich Low_complexity Low_complexity 1 28 0 5 961 1363 87 0 5 chr3 49389320 49389505 -110210278 + B2_Mm2 SINE B2 2 185 -10 5 961 3655 86 4 6 chr3 49389639 49390145 -110209638 - L1_Mus3 LINE L1 0 6638 6134 5 961 194 318 16 16 chr3 49390668 49390732 -110209051 + L3 LINE CR1 1659 1722 -2767 5 961 430 369 0 44 chr3 49391420 49391624 -110208159 - MT2A LTR ERVL -71 462 268 5 961 1642 131 75 0 chr3 49391840 49392122 -110207661 + Lx3A LINE L1 6664 6966 -15 5 961 183 42 0 0 chr3 49392122 49392146 -110207637 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 5 961 726 12 0 0 chr3 49392191 49392274 -110207509 + (TG)n Simple_repeat Simple_repeat 2 84 0 5 961 7312 113 5 21 chr3 49392275 49393578 -110206205 + Lx LINE L1 5365 6648 -6 5 961 309 307 16 102 chr3 49393740 49393867 -110205916 - RSINE1 SINE B4 -38 127 12 5 961 1160 219 82 52 chr3 49394157 49394523 -110205260 + ORR1C2 LTR MaLR 8 384 0 5 961 3348 69 0 9 chr3 49397762 49398218 -110201565 + L1Md_F2 LINE L1 6131 6582 0 5 961 2853 92 11 22 chr3 49398259 49398505 -110201278 - Lx7 LINE L1 -1782 5914 5675 5 961 7055 1 0 0 chr3 49398505 49399336 -110200447 + L1Md_A LINE L1 5800 6582 0 5 961 2853 68 13 20 chr3 49399336 49399498 -110200285 - Lx7 LINE L1 -206 5677 5517 5 961 5442 63 3 3 chr3 49399498 49400197 -110199586 + L1Md_F2 LINE L1 5884 6582 0 5 961 2853 68 13 20 chr3 49400197 49400210 -110199573 - Lx7 LINE L1 -367 5516 5499 5 961 207 220 0 0 chr3 49401400 49401450 -110198333 + (CA)n Simple_repeat Simple_repeat 1 50 0 5 961 8235 164 42 56 chr3 49402806 49404674 -110195109 + L1_Mur2 LINE L1 2830 4671 -1206 5 961 1865 140 9 31 chr3 49404674 49404992 -110194791 - RLTR10E LTR ERVK 0 311 1 5 961 17804 87 30 19 chr3 49404992 49407481 -110192302 - MMERVK10C-int LTR ERVK 0 7581 5065 5 961 3092 101 0 0 chr3 49407740 49408156 -110191627 - MMERVK10C-int LTR ERVK -2543 5038 4623 5 961 766 110 39 8 chr3 49408941 49409069 -110190714 - MMERVK10C-int LTR ERVK -2920 4661 4530 5 961 545 186 62 30 chr3 49409040 49409207 -110190576 - MMERVK10C-int LTR ERVK -2376 2468 2356 5 961 3482 136 126 5 chr3 49409211 49409840 -110189943 - ETnERV2-int LTR ERVK -3135 4271 3567 5 961 1165 231 72 23 chr3 49409848 49410154 -110189629 - ETnERV2-int LTR ERVK -4632 2774 2454 5 961 546 195 88 0 chr3 49410167 49410280 -110189503 - RMER16-int LTR ERVK -5077 1060 938 5 961 1474 172 116 37 chr3 49410285 49410716 -110189067 - RMER16-int LTR ERVK -4750 656 317 5 961 1406 138 0 0 chr3 49410826 49411066 -110188717 - MMERVK10C-int LTR ERVK -6629 952 713 5 961 1212 122 17 32 chr3 49411077 49411359 -110188424 - MMERVK10C-int LTR ERVK -7212 369 41 5 961 1915 158 0 10 chr3 49411370 49411684 -110188099 - RLTR10E LTR ERVK 0 311 1 5 961 527 137 116 0 chr3 49411684 49411779 -110188004 + L1_Mur2 LINE L1 4667 4772 -1105 5 961 2610 136 12 14 chr3 49411781 49412200 -110187583 + Lx LINE L1 6161 6578 -76 5 961 1447 11 17 0 chr3 49412273 49412449 -110187334 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 5 961 234 0 0 0 chr3 49412449 49412475 -110187308 + (GGGA)n Simple_repeat Simple_repeat 3 28 0 5 961 860 53 9 0 chr3 49412475 49412588 -110187195 + (GAAA)n Simple_repeat Simple_repeat 4 118 0 5 961 3261 151 9 3 chr3 49412590 49413169 -110186614 + L1_Mur2 LINE L1 4785 5366 -511 5 962 291 364 51 26 chr3 49414767 49415080 -110184703 + L1_Mur3 LINE L1 109 429 -7299 5 962 1544 194 32 104 chr3 49415125 49415597 -110184186 + L1_Mur3 LINE L1 854 1291 -6437 5 962 1152 190 43 8 chr3 49415598 49415865 -110183918 + L1_Mur3 LINE L1 2559 2839 -1075 5 962 466 291 53 75 chr3 49415915 49416173 -110183610 + Lx6 LINE L1 7195 7414 -46 5 962 882 123 12 24 chr3 49416173 49416340 -110183443 + GA-rich Low_complexity Low_complexity 4 168 0 5 962 441 0 0 0 chr3 49416341 49416390 -110183393 + (GAAAA)n Simple_repeat Simple_repeat 1 49 0 5 962 917 110 0 7 chr3 49416395 49416541 -110183242 + (GGAA)n Simple_repeat Simple_repeat 4 148 0 5 962 4821 247 100 69 chr3 49416541 49419166 -110180617 + L1_Mus3 LINE L1 2808 5529 -351 5 962 3593 60 38 78 chr3 49419166 49419690 -110180093 - RLTR1C LTR ERV1 0 503 1 5 962 7102 116 12 5 chr3 49419690 49420784 -110178999 + L1_Mus3 LINE L1 5530 6631 -7 5 962 6059 216 49 11 chr3 49420850 49422497 -110177286 + Lx6 LINE L1 4422 6128 -1332 5 962 3384 262 69 75 chr3 49422493 49422978 -110176805 + Lx6 LINE L1 6250 6742 -718 5 962 638 65 11 0 chr3 49422978 49423070 -110176713 + (TAGA)n Simple_repeat Simple_repeat 4 96 0 5 962 999 149 0 0 chr3 49423070 49423218 -110176565 + B1_Mus1 SINE Alu 1 148 0 5 962 3384 262 69 75 chr3 49423218 49423939 -110175844 + Lx6 LINE L1 6743 7448 -12 5 962 358 339 0 0 chr3 49424815 49424924 -110174859 + RMER1B Other Other 598 706 -360 5 962 835 234 53 12 chr3 49425015 49425301 -110174482 - BGLII_B LTR ERVK -4 437 127 5 962 4249 167 48 30 chr3 49425419 49426556 -110173227 - MYSERV16_I-int LTR ERVK -83 2759 1037 5 962 232 178 141 64 chr3 49426557 49426635 -110173148 - RMER4B LTR ERVK -51 534 451 5 962 421 210 69 21 chr3 49426636 49426786 -110172997 - MYSERV16_I-int LTR ERVK -1375 951 824 5 962 3642 70 70 4 chr3 49426994 49427481 -110172302 - MURVY-LTR LTR ERV1 0 519 1 5 962 921 217 24 75 chr3 49428487 49428842 -110170941 - BGLII_B LTR ERVK 0 441 70 5 962 1870 258 100 72 chr3 49428928 49429614 -110170169 + RMER1C Other Other 47 1068 -274 5 962 256 227 38 51 chr3 49429651 49429730 -110170053 + RMER1C Other Other 1051 1128 -214 5 962 1977 251 67 4 chr3 49429753 49430218 -110169565 - Lx5 LINE L1 0 7050 6557 5 962 3873 198 41 40 chr3 49430363 49431525 -110168258 + L1_Mur2 LINE L1 883 2051 -3826 5 962 363 44 0 0 chr3 49431525 49431570 -110168213 + (TG)n Simple_repeat Simple_repeat 1 45 0 5 962 3873 193 39 42 chr3 49431570 49431672 -110168111 + L1_Mur2 LINE L1 2052 2151 -3726 5 962 225 0 0 0 chr3 49431672 49431697 -110168086 + (CA)n Simple_repeat Simple_repeat 2 26 0 5 962 891 28 0 0 chr3 49431697 49431802 -110167981 + (GA)n Simple_repeat Simple_repeat 2 107 0 5 962 3873 193 39 42 chr3 49431802 49431894 -110167889 + L1_Mur2 LINE L1 2152 2243 -3634 5 962 742 250 27 59 chr3 49431887 49432127 -110167656 + RMER1C Other Other 919 1321 -21 5 962 224 186 0 17 chr3 49432292 49432352 -110167431 + GA-rich Low_complexity Low_complexity 3 61 0 5 962 227 106 43 0 chr3 49432883 49432930 -110166853 + (CAGAGA)n Simple_repeat Simple_repeat 6 54 0 5 962 288 321 9 18 chr3 49434758 49434869 -110164914 + MLT2D LTR ERVL 84 193 -221 5 962 603 0 0 0 chr3 49435563 49435630 -110164153 + (TAGA)n Simple_repeat Simple_repeat 1 67 0 5 962 277 299 126 34 chr3 49435729 49435963 -110163820 - L1MA7 LINE L1 -402 5910 5654 5 962 357 283 57 0 chr3 49435963 49436069 -110163714 - B3A SINE B2 -80 118 7 5 962 1148 88 0 0 chr3 49437036 49437184 -110162599 - B1_Mus1 SINE Alu 0 148 1 5 962 33 0 0 0 chr3 49438350 49438383 -110161400 + AT_rich Low_complexity Low_complexity 1 33 0 5 962 212 208 19 0 chr3 49438405 49438458 -110161325 + (TAAA)n Simple_repeat Simple_repeat 4 57 0 5 962 180 111 67 0 chr3 49438468 49438513 -110161270 + (TAGA)n Simple_repeat Simple_repeat 1 48 0 5 962 755 174 0 7 chr3 49438530 49438674 -110161109 + GA-rich Low_complexity Low_complexity 1 144 0 5 962 1443 45 0 0 chr3 49438674 49438853 -110160930 + (GAAA)n Simple_repeat Simple_repeat 1 179 0 5 962 711 218 14 0 chr3 49439939 49440081 -110159702 + B1_Mus2 SINE Alu 2 145 -2 5 962 486 0 0 0 chr3 49440081 49440135 -110159648 + (CAAAA)n Simple_repeat Simple_repeat 2 55 0 5 962 22 0 0 0 chr3 49440151 49440173 -110159610 + AT_rich Low_complexity Low_complexity 1 22 0 5 962 194 186 39 103 chr3 49440473 49440551 -110159232 - L3 LINE CR1 -2122 2367 2295 5 962 307 335 18 71 chr3 49442266 49442436 -110157347 + RSINE1 SINE B4 5 165 0 5 962 213 310 0 0 chr3 49442437 49442508 -110157275 + (CA)n Simple_repeat Simple_repeat 2 72 0 5 962 30 0 0 0 chr3 49442544 49442574 -110157209 + AT_rich Low_complexity Low_complexity 1 30 0 5 962 209 230 0 54 chr3 49442800 49442825 -110156958 + A-rich Low_complexity Low_complexity 3 25 0 5 962 252 0 0 0 chr3 49442825 49442853 -110156930 + (CA)n Simple_repeat Simple_repeat 2 29 0 5 962 209 230 0 54 chr3 49442853 49442919 -110156864 + A-rich Low_complexity Low_complexity 26 89 0 5 962 739 273 127 11 chr3 49443009 49443388 -110156395 - Lx7 LINE L1 -400 7296 6874 5 962 4069 13 0 0 chr3 49443681 49444147 -110155636 + L1Md_A LINE L1 5121 5586 -297 5 962 8771 16 0 0 chr3 49444147 49445143 -110154640 + L1Md_A LINE L1 5587 6582 0 5 962 21 71 0 0 chr3 49445886 49445928 -110153855 + AT_rich Low_complexity Low_complexity 1 42 0 5 962 22 0 0 0 chr3 49446834 49446856 -110152927 + AT_rich Low_complexity Low_complexity 1 22 0 5 962 701 121 0 8 chr3 49447241 49447374 -110152409 + Lx2 LINE L1 6865 6996 -1 5 962 436 354 6 12 chr3 49448958 49449124 -110150659 - Lx9 LINE L1 -405 7239 7075 5 962 2413 96 8 73 chr3 49449564 49449948 -110149835 + RLTR10D LTR ERVK 1 359 0 5 962 611 222 38 25 chr3 49450613 49450770 -110149013 + URR1A DNA MER1_type 68 226 0 5 962 414 0 0 0 chr3 49451285 49451331 -110148452 + (CA)n Simple_repeat Simple_repeat 1 46 0 5 962 341 326 14 14 chr3 49451493 49451636 -110148147 - MARNA DNA Mariner -237 349 207 5 962 596 263 47 28 chr3 49451934 49452145 -110147638 + B4 SINE B4 3 217 -75 5 962 31 26 0 0 chr3 49453305 49453343 -110146440 + AT_rich Low_complexity Low_complexity 1 38 0 5 962 21 0 0 0 chr3 49453607 49453628 -110146155 + AT_rich Low_complexity Low_complexity 1 21 0 5 962 207 0 0 0 chr3 49454770 49454793 -110144990 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 6 962 7693 16 1 0 chr3 49455540 49456416 -110143367 - L1Md_A LINE L1 -1 6581 5705 6 962 1856 191 135 23 chr3 49457301 49457773 -110142010 - RLTR11A LTR ERVK 0 528 4 6 962 885 231 56 10 chr3 49458322 49458616 -110141167 + ORR1D1 LTR MaLR 3 372 -2 6 962 226 261 154 33 chr3 49459364 49459455 -110140328 + LTR40b LTR ERVL 343 444 -18 6 962 7429 81 8 5 chr3 49459498 49460660 -110139123 + L1_Mus1 LINE L1 5403 6567 0 6 962 339 150 0 0 chr3 49460660 49460720 -110139063 + (GGAA)n Simple_repeat Simple_repeat 2 61 0 6 962 1390 50 7 10 chr3 49460721 49461127 -110138656 + (GAAA)n Simple_repeat Simple_repeat 1 405 0 6 962 285 294 35 12 chr3 49461456 49461542 -110138241 - RMER5 LTR ERV1 -19 515 428 6 962 708 12 0 0 chr3 49462175 49462256 -110137527 + (TC)n Simple_repeat Simple_repeat 2 82 0 6 962 216 189 0 0 chr3 49462431 49462468 -110137315 + (TATATG)n Simple_repeat Simple_repeat 1 37 0 6 962 198 118 0 0 chr3 49462517 49462551 -110137232 + (TA)n Simple_repeat Simple_repeat 2 35 0 6 962 804 103 0 0 chr3 49462684 49462791 -110136992 + U6 snRNA snRNA 1 107 0 6 962 814 121 139 0 chr3 49462791 49462956 -110136827 + Lx2 LINE L1 6783 6970 -27 6 962 411 68 0 0 chr3 49462956 49463015 -110136768 + (TAAA)n Simple_repeat Simple_repeat 1 59 0 6 962 483 63 0 0 chr3 49463668 49463731 -110136052 + (CTTTG)n Simple_repeat Simple_repeat 2 64 0 6 962 289 337 51 72 chr3 49464404 49464599 -110135184 + ORR1E LTR MaLR 1 191 -168 6 962 366 183 0 0 chr3 49464797 49464868 -110134915 + (CA)n Simple_repeat Simple_repeat 1 71 0 6 962 236 371 11 0 chr3 49467337 49467426 -110132357 + MER94 DNA AcHobo 7 96 -38 6 962 330 328 160 8 chr3 49467481 49467779 -110132004 - ORR1E LTR MaLR -8 371 1 6 962 227 224 17 0 chr3 49469669 49469727 -110130056 - MTC LTR MaLR -1 420 362 6 962 1698 212 65 48 chr3 49470048 49470136 -110129647 - MTC LTR MaLR -15 392 306 6 962 432 0 0 0 chr3 49470136 49470184 -110129599 + (CAA)n Simple_repeat Simple_repeat 1 48 0 6 962 1698 189 77 40 chr3 49470184 49470488 -110129295 - MTC LTR MaLR -101 320 4 6 962 427 350 35 40 chr3 49470488 49470697 -110129086 - ORR1E LTR MaLR -151 208 1 6 962 23 0 0 0 chr3 49470821 49470844 -110128939 + AT_rich Low_complexity Low_complexity 1 23 0 6 962 825 63 0 0 chr3 49471447 49471558 -110128225 - B1_Mus2 SINE Alu 0 147 37 6 962 545 336 84 15 chr3 49472351 49472614 -110127169 - B4A SINE B4 -10 282 2 6 962 2339 91 3 58 chr3 49472814 49473177 -110126606 + L1_Mus2 LINE L1 6224 6566 0 6 962 227 316 8 25 chr3 49473395 49473533 -110126250 + CT-rich Low_complexity Low_complexity 1 135 0 6 962 485 228 123 0 chr3 49474394 49474508 -110125275 + B3 SINE B2 3 130 -86 6 962 21 36 0 0 chr3 49474531 49474559 -110125224 + AT_rich Low_complexity Low_complexity 1 28 0 6 962 2591 91 19 0 chr3 49475836 49476197 -110123586 - Lx3_Mus LINE L1 0 7009 6642 6 962 442 383 25 21 chr3 49476603 49477024 -110122759 + ERVL-B4-int LTR ERVL 2853 3333 -2381 6 962 903 328 61 13 chr3 49478356 49478733 -110121050 - RCHARR1 DNA MER1_type -577 397 3 6 962 586 300 143 24 chr3 49478928 49479215 -110120568 - MTE2a LTR MaLR -2 377 57 6 962 645 236 180 0 chr3 49479457 49479635 -110120148 - B3 SINE B2 -6 210 1 6 962 243 0 0 0 chr3 49479770 49479797 -110119986 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 6 962 269 324 63 98 chr3 49481276 49481481 -110118302 + RMER15 LTR ERVL 336 533 -42 6 962 217 333 0 31 chr3 49482466 49482531 -110117252 + RSINE1 SINE B4 12 74 -91 6 962 792 287 5 0 chr3 49483353 49483541 -110116242 + B3 SINE B2 28 216 0 6 962 224 373 43 50 chr3 49484194 49484335 -110115448 - B1F SINE Alu -9 140 1 6 962 750 53 0 0 chr3 49484583 49484678 -110115105 + (TAAA)n Simple_repeat Simple_repeat 4 98 0 6 962 32 0 0 0 chr3 49485070 49485102 -110114681 + AT_rich Low_complexity Low_complexity 1 32 0 6 962 579 66 0 0 chr3 49485142 49485218 -110114565 + (TTCC)n Simple_repeat Simple_repeat 1 76 0 6 962 1006 128 0 22 chr3 49485218 49485401 -110114382 + CT-rich Low_complexity Low_complexity 2 180 0 6 962 4195 110 26 11 chr3 49485404 49486029 -110113754 - Lx3A LINE L1 -9 6972 6339 6 962 266 299 0 30 chr3 49486236 49486336 -110113447 - RLTR42-int LTR ERVK -4195 1327 1231 6 962 23 0 0 0 chr3 49487175 49487198 -110112585 + AT_rich Low_complexity Low_complexity 1 23 0 6 962 351 218 56 22 chr3 49487861 49487950 -110111833 + ID_B1 SINE B4 90 181 -43 6 962 383 317 10 0 chr3 49487956 49488060 -110111723 + B1_Mur1 SINE Alu 22 126 -23 6 962 543 56 0 0 chr3 49488073 49488144 -110111639 + (GA)n Simple_repeat Simple_repeat 2 72 0 6 962 312 85 0 41 chr3 49488979 49488991 -110110792 + HAL1-3A_ME LINE L1 1966 1976 -882 6 962 470 277 16 88 chr3 49488991 49489185 -110110598 + B3A SINE B2 3 182 -16 6 962 312 85 0 41 chr3 49489185 49489221 -110110562 + HAL1-3A_ME LINE L1 1977 2012 -846 6 962 308 252 29 10 chr3 49489221 49489325 -110110458 + (CA)n Simple_repeat Simple_repeat 1 106 0 6 962 272 307 123 59 chr3 49489347 49489534 -110110249 + B4A SINE B4 81 279 -13 6 962 487 237 140 6 chr3 49491498 49491676 -110108107 + RMER20B LTR ERVK 210 411 -216 6 962 23 0 0 0 chr3 49492143 49492166 -110107617 + AT_rich Low_complexity Low_complexity 1 23 0 6 962 609 219 191 4 chr3 49493070 49493322 -110106461 - Lx9 LINE L1 -2 7642 7344 6 962 24 53 0 0 chr3 49493753 49493791 -110105992 + AT_rich Low_complexity Low_complexity 1 38 0 6 962 22 35 0 0 chr3 49494053 49494082 -110105701 + AT_rich Low_complexity Low_complexity 1 29 0 6 962 621 61 0 0 chr3 49494426 49494508 -110105275 + (TCCC)n Simple_repeat Simple_repeat 1 82 0 6 962 924 105 0 0 chr3 49494508 49494651 -110105132 + (TTTC)n Simple_repeat Simple_repeat 1 143 0 6 962 355 243 98 9 chr3 49494748 49494860 -110104923 + PB1 SINE Alu 4 125 -2 6 962 22 70 0 0 chr3 49495945 49495988 -110103795 + AT_rich Low_complexity Low_complexity 1 43 0 6 962 361 341 23 30 chr3 49496138 49496271 -110103512 + RSINE1 SINE B4 3 134 -31 6 962 30 0 0 0 chr3 49496685 49496715 -110103068 + AT_rich Low_complexity Low_complexity 1 30 0 6 962 1369 28 23 0 chr3 49496896 49497072 -110102711 + (TCTCCC)n Simple_repeat Simple_repeat 1 180 0 6 962 227 296 56 0 chr3 49497127 49497198 -110102585 - ID_B1 SINE B4 -46 178 104 6 962 213 381 47 12 chr3 49497274 49497359 -110102424 - L2b LINE L2 -11 3364 3277 6 962 636 215 61 8 chr3 49498120 49498206 -110101577 + B1_Mur4 SINE Alu 6 91 -59 6 962 630 0 0 0 chr3 49498206 49498276 -110101507 + (GA)n Simple_repeat Simple_repeat 2 71 0 6 962 636 215 61 8 chr3 49498276 49498320 -110101463 + B1_Mur4 SINE Alu 92 142 -8 6 962 1307 267 10 3 chr3 49498695 49498996 -110100787 + MTD LTR MaLR 21 323 -96 6 962 663 285 47 44 chr3 49499202 49499499 -110100284 - RLTR15 LTR ERVK -39 320 23 6 962 1045 218 39 29 chr3 49499521 49499702 -110100081 + Lx9 LINE L1 5538 5720 -127 6 962 782 39 10 0 chr3 49499702 49499804 -110099979 + (TAGA)n Simple_repeat Simple_repeat 3 105 0 6 962 1045 233 38 30 chr3 49499804 49499962 -110099821 + Lx9 LINE L1 5721 5916 -1728 6 962 400 281 106 18 chr3 49500003 49500173 -110099610 + MTD-int LTR MaLR 1072 1256 -2 1 962 748 224 400 4 chr3 49500175 49500419 -110099364 + MTD LTR MaLR 1 341 -78 1 962 606 82 0 0 chr3 49501484 49501569 -110098214 + (TA)n Simple_repeat Simple_repeat 1 85 0 2 962 303 123 0 36 chr3 49502775 49502859 -110096924 + T-rich Low_complexity Low_complexity 3 83 0 3 962 336 77 0 0 chr3 49503811 49503863 -110095920 + (TTTG)n Simple_repeat Simple_repeat 2 53 0 4 962 24 0 0 0 chr3 49504633 49504657 -110095126 + AT_rich Low_complexity Low_complexity 1 24 0 5 962 196 306 139 12 chr3 49504991 49505077 -110094706 - MIR SINE MIR -89 173 77 6 962 282 298 45 90 chr3 49507292 49507425 -110092358 - MLT1D LTR MaLR -292 213 87 7 962 1326 31 0 0 chr3 49508426 49508585 -110091198 + (TTC)n Simple_repeat Simple_repeat 2 160 0 8 962 1555 202 81 38 chr3 49508615 49508731 -110091052 - Lx5 LINE L1 -2 7048 6914 9 962 489 17 0 0 chr3 49508731 49508789 -110090994 + (CA)n Simple_repeat Simple_repeat 2 59 0 1 962 1555 202 81 38 chr3 49508789 49509068 -110090715 - Lx5 LINE L1 -137 6913 6637 9 962 313 234 16 8 chr3 49509285 49509410 -110090373 - Lx9 LINE L1 0 7644 7519 1 962 341 109 16 0 chr3 49509410 49509474 -110090309 + (TA)n Simple_repeat Simple_repeat 1 65 0 1 962 257 261 65 0 chr3 49509474 49509566 -110090217 - Lx9 LINE L1 -257 7387 7290 1 962 200 86 29 0 chr3 49511261 49511296 -110088487 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 1 962 2374 192 61 50 chr3 49511550 49512011 -110087772 + RLTR20B2 LTR ERVK 1 465 -95 1 962 423 0 0 0 chr3 49512011 49512058 -110087725 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 962 2374 192 61 50 chr3 49512058 49512150 -110087633 + RLTR20B2 LTR ERVK 466 559 -1 1 962 356 314 104 7 chr3 49512327 49512481 -110087302 + RMER15 LTR ERVL 407 575 0 1 962 210 71 0 0 chr3 49512564 49512592 -110087191 + (A)n Simple_repeat Simple_repeat 1 28 0 1 962 186 43 0 0 chr3 49512940 49512963 -110086820 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 962 368 325 82 73 chr3 49513249 49513455 -110086328 - MLT1F1 LTR MaLR -338 231 24 1 962 340 19 19 37 chr3 49514204 49514258 -110085525 + (TTTG)n Simple_repeat Simple_repeat 4 56 0 2 962 4168 69 5 11 chr3 49514643 49515197 -110084586 + L1Md_F2 LINE L1 6021 6571 -11 2 962 304 316 61 114 chr3 49515475 49515739 -110084044 - MLT2B1 LTR ERVL -204 316 67 2 962 5088 185 30 18 chr3 49516237 49517215 -110082568 - Lx4B LINE L1 -4 7054 6066 2 962 383 349 30 38 chr3 49517260 49517391 -110082392 + RSINE1 SINE B4 30 159 -6 2 962 237 221 0 0 chr3 49517911 49517979 -110081804 + (CA)n Simple_repeat Simple_repeat 1 68 0 2 962 392 293 20 0 chr3 49517979 49518148 -110081635 + (CA)n Simple_repeat Simple_repeat 1 172 0 2 962 24 0 0 0 chr3 49518579 49518603 -110081180 + AT_rich Low_complexity Low_complexity 1 24 0 2 962 248 355 43 11 chr3 49518764 49518858 -110080925 + B4A SINE B4 2 98 -194 2 962 546 16 0 0 chr3 49519016 49519079 -110080704 + (TC)n Simple_repeat Simple_repeat 1 63 0 2 962 670 177 0 13 chr3 49519080 49519309 -110080474 + (CA)n Simple_repeat Simple_repeat 1 226 0 2 962 237 250 77 15 chr3 49520256 49520321 -110079462 + PB1D7 SINE Alu 46 114 -6 3 962 285 197 0 0 chr3 49520417 49520478 -110079305 + GA-rich Low_complexity Low_complexity 4 64 0 3 962 519 273 3 0 chr3 49520975 49521573 -110078210 + (TG)n Simple_repeat Simple_repeat 1 600 0 3 962 269 261 17 0 chr3 49521586 49521705 -110078078 + (TATG)n Simple_repeat Simple_repeat 2 122 0 3 962 386 331 6 6 chr3 49521706 49521885 -110077898 + (TG)n Simple_repeat Simple_repeat 2 180 0 3 962 462 190 0 0 chr3 49521923 49522044 -110077739 + (TG)n Simple_repeat Simple_repeat 2 122 0 3 962 300 272 8 0 chr3 49522060 49522318 -110077465 + (TG)n Simple_repeat Simple_repeat 1 260 0 3 962 182 219 16 0 chr3 49522371 49522435 -110077348 + (TG)n Simple_repeat Simple_repeat 2 66 0 3 962 5198 56 2 0 chr3 49523112 49523755 -110076028 - L1_Mus1 LINE L1 0 6567 5924 3 962 228 35 0 0 chr3 49523777 49523806 -110075977 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 3 962 692 275 43 0 chr3 49523963 49524170 -110075613 + B3 SINE B2 1 216 0 3 962 564 56 0 0 chr3 49524708 49524780 -110075003 + (CA)n Simple_repeat Simple_repeat 2 73 0 3 962 328 357 28 98 chr3 49525032 49525175 -110074608 + B4A SINE B4 48 180 -112 3 962 1548 251 49 24 chr3 49525255 49525664 -110074119 + MTD LTR MaLR 1 419 0 4 962 1994 186 47 44 chr3 49525991 49526405 -110073378 + MTC LTR MaLR 2 406 -15 4 962 440 250 19 0 chr3 49527033 49527137 -110072646 - MTD LTR MaLR 0 419 314 4 962 269 307 161 3 chr3 49527171 49527495 -110072288 - Lx9 LINE L1 -49 7595 7221 4 962 421 209 143 54 chr3 49527525 49527672 -110072111 + MT2A LTR ERVL 1 160 -373 4 962 17491 181 41 12 chr3 49527677 49531191 -110068592 + MERVL_2A-int LTR ERVL 236 3851 -1910 4 962 3743 37 5 0 chr3 49531206 49531640 -110068143 - RLTR10C LTR ERVK 0 436 1 4 962 7653 36 2 0 chr3 49531640 49532574 -110067209 - MMERVK10C-int LTR ERVK 0 7581 6646 4 962 40122 38 1 1 chr3 49532560 49537497 -110062286 - MMERVK10C-int LTR ERVK -1771 5810 870 4 962 2524 90 53 3 chr3 49537495 49537875 -110061908 - MMERVK10C-int LTR ERVK -7182 399 1 4 962 3769 32 5 0 chr3 49537875 49538309 -110061474 - RLTR10C LTR ERVK 0 436 1 4 962 5720 195 58 8 chr3 49538312 49538594 -110061189 + MERVL_2A-int LTR ERVL 3863 4157 -1604 4 962 2852 64 53 5 chr3 49538594 49538972 -110060811 + MTA_Mm LTR MaLR 1 396 0 4 962 5720 195 58 8 chr3 49538972 49539860 -110059923 + MERVL_2A-int LTR ERVL 4158 5091 -670 4 962 2674 186 99 41 chr3 49539881 49540537 -110059246 + Lx LINE L1 5961 6654 0 4 962 3065 172 18 10 chr3 49540550 49541159 -110058624 + MERVL_2A-int LTR ERVL 5077 5690 -71 4 962 2015 148 0 12 chr3 49541193 49541515 -110058268 - MTC LTR MaLR 0 421 104 4 962 2123 96 30 0 chr3 49541531 49541833 -110057950 + L1_Mus1 LINE L1 6257 6567 0 5 962 532 188 0 0 chr3 49541866 49541962 -110057821 - MTC LTR MaLR -323 98 3 4 962 494 131 45 36 chr3 49541962 49542073 -110057710 + MERVL_2A-int LTR ERVL 5650 5761 0 4 962 753 253 246 79 chr3 49542075 49542469 -110057314 + MT2A LTR ERVL 3 463 -70 4 962 186 43 0 0 chr3 49542469 49542492 -110057291 + (CA)n Simple_repeat Simple_repeat 1 23 0 5 962 753 253 246 79 chr3 49542492 49542552 -110057231 + MT2A LTR ERVL 464 533 0 4 962 417 20 0 0 chr3 49542581 49542631 -110057152 + (TG)n Simple_repeat Simple_repeat 1 50 0 5 962 807 263 13 66 chr3 49542631 49542859 -110056924 - MTD LTR MaLR -203 216 1 5 962 555 88 0 0 chr3 49543379 49543470 -110056313 + (CA)n Simple_repeat Simple_repeat 2 92 0 5 962 1734 83 122 58 chr3 49543484 49543829 -110055954 - L1_Mus3 LINE L1 -1 6637 6271 5 963 211 200 0 0 chr3 49545276 49545316 -110054467 + (CAGA)n Simple_repeat Simple_repeat 2 41 0 5 963 186 43 0 0 chr3 49546601 49546624 -110053159 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 5 963 242 106 21 0 chr3 49546928 49546975 -110052808 + (TTTG)n Simple_repeat Simple_repeat 1 48 0 5 963 765 51 0 0 chr3 49549704 49549802 -110049981 + (TTCC)n Simple_repeat Simple_repeat 4 101 0 5 963 182 156 22 0 chr3 49549802 49549847 -110049936 + CT-rich Low_complexity Low_complexity 2 47 0 6 963 589 154 30 8 chr3 49549857 49549988 -110049795 - Lx5 LINE L1 -14 7036 6903 6 963 351 105 0 0 chr3 49551572 49551629 -110048154 + (CA)n Simple_repeat Simple_repeat 2 58 0 6 963 23 0 0 0 chr3 49551629 49551652 -110048131 + AT_rich Low_complexity Low_complexity 1 23 0 6 963 644 328 29 21 chr3 49551672 49551915 -110047868 + B4A SINE B4 2 246 -46 6 963 1426 80 30 0 chr3 49551953 49552154 -110047629 + MTB LTR MaLR 1 207 -193 6 963 2232 113 3 6 chr3 49552161 49552489 -110047294 + ORR1A2 LTR MaLR 1 327 0 6 963 200 275 0 28 chr3 49552492 49552563 -110047220 + (CA)n Simple_repeat Simple_repeat 2 70 0 6 963 273 119 0 0 chr3 49554465 49554507 -110045276 + (CA)n Simple_repeat Simple_repeat 1 42 0 6 963 255 61 0 0 chr3 49554842 49554875 -110044908 + (TGAA)n Simple_repeat Simple_repeat 2 34 0 6 963 385 328 179 8 chr3 49555511 49555751 -110044032 + B4A SINE B4 5 285 -7 7 963 30 0 0 0 chr3 49557826 49557856 -110041927 + AT_rich Low_complexity Low_complexity 1 30 0 7 963 238 278 21 0 chr3 49561306 49561403 -110038380 + G-rich Low_complexity Low_complexity 3 101 0 7 963 297 0 0 0 chr3 49562021 49562054 -110037729 + (TA)n Simple_repeat Simple_repeat 1 33 0 7 963 182 273 28 83 chr3 49563423 49563495 -110036288 + L2 LINE L2 2855 2922 -497 7 963 468 302 50 0 chr3 49563509 49563628 -110036155 + B1_Mur1 SINE Alu 5 129 -20 7 963 210 91 0 0 chr3 49563694 49563727 -110036056 + (CAAA)n Simple_repeat Simple_repeat 4 36 0 7 963 26 0 0 0 chr3 49563764 49563790 -110035993 + AT_rich Low_complexity Low_complexity 1 26 0 7 963 466 57 29 0 chr3 49564088 49564158 -110035625 + (TCCCC)n Simple_repeat Simple_repeat 4 75 0 7 963 272 31 0 0 chr3 49564158 49564190 -110035593 + (TC)n Simple_repeat Simple_repeat 1 32 0 7 963 21 57 0 0 chr3 49565730 49565765 -110034018 + AT_rich Low_complexity Low_complexity 1 35 0 8 963 719 196 68 0 chr3 49566455 49566588 -110033195 - B1_Mur3 SINE Alu -7 142 1 8 963 238 372 22 14 chr3 49566727 49566866 -110032917 + MER5A1 DNA MER1_type 20 159 -7 8 963 495 115 81 31 chr3 49567277 49567438 -110032345 + (CATATA)n Simple_repeat Simple_repeat 1 169 0 8 963 276 77 0 0 chr3 49568983 49569022 -110030761 + (CA)n Simple_repeat Simple_repeat 2 40 0 8 963 23 54 0 0 chr3 49569022 49569059 -110030724 + AT_rich Low_complexity Low_complexity 1 37 0 8 963 507 328 99 30 chr3 49569368 49569569 -110030214 - B4A SINE B4 -65 227 13 8 963 4586 68 3 14 chr3 49569591 49570223 -110029560 - L1Md_F2 LINE L1 -27 6555 5931 8 963 344 22 22 0 chr3 49570716 49570761 -110029022 + (TTTG)n Simple_repeat Simple_repeat 3 48 0 8 963 3743 55 95 0 chr3 49570768 49571274 -110028509 - L1_Mus3 LINE L1 -7 6631 6078 8 963 1272 72 6 0 chr3 49571274 49571454 -110028329 + L1_Mus3 LINE L1 5864 6044 -594 8 963 25 0 0 0 chr3 49573185 49573210 -110026573 + AT_rich Low_complexity Low_complexity 1 25 0 9 963 392 230 221 0 chr3 49574663 49574776 -110025007 - RSINE1 SINE B4 -21 144 7 9 963 498 17 0 0 chr3 49576237 49576296 -110023487 + (TA)n Simple_repeat Simple_repeat 1 59 0 9 963 453 76 0 0 chr3 49576635 49576701 -110023082 + (CCAA)n Simple_repeat Simple_repeat 2 67 0 9 963 207 0 0 0 chr3 49577363 49577386 -110022397 + (A)n Simple_repeat Simple_repeat 1 23 0 9 963 1027 52 73 0 chr3 49577423 49577559 -110022224 + B1_Mus2 SINE Alu 2 147 0 9 963 266 365 41 14 chr3 49577615 49577762 -110022021 - MER5B DNA MER1_type -19 159 9 9 963 539 41 0 0 chr3 49577812 49577885 -110021898 - L1Md_F2 LINE L1 -19 6563 6491 9 963 581 320 125 45 chr3 49578182 49578470 -110021313 - MTEa LTR MaLR -60 319 9 9 963 396 146 0 0 chr3 49578484 49578573 -110021210 + (GA)n Simple_repeat Simple_repeat 2 90 0 9 963 366 317 33 16 chr3 49580646 49580768 -110019015 + ID_B1 SINE B4 84 207 -17 1 963 285 273 36 108 chr3 49580918 49581140 -110018643 + L1MC5 LINE L1 6701 6906 -1055 1 963 360 280 13 47 chr3 49581549 49581699 -110018084 + L1MC5 LINE L1 7318 7462 -499 1 963 328 266 88 35 chr3 49581856 49581969 -110017814 + ID_B1 SINE B4 80 198 -26 1 963 265 276 0 22 chr3 49582580 49582669 -110017114 + (TATATG)n Simple_repeat Simple_repeat 6 92 0 1 963 1303 56 0 0 chr3 49583032 49583210 -110016573 - L1_Mus2 LINE L1 -537 6029 5852 1 963 3733 74 2 26 chr3 49583210 49583707 -110016076 + L1_Mus2 LINE L1 6080 6564 -2 1 963 189 0 0 0 chr3 49584264 49584285 -110015498 + (A)n Simple_repeat Simple_repeat 1 21 0 1 963 226 309 41 41 chr3 49584854 49584999 -110014784 - MER113 DNA MER1_type -11 510 366 1 963 385 336 26 53 chr3 49586202 49586301 -110013482 + RSINE1 SINE B4 3 103 -62 1 963 3092 56 2 10 chr3 49586301 49586700 -110013083 - MTA_Mm LTR MaLR 0 396 1 1 963 385 336 26 53 chr3 49586700 49586751 -110013032 + RSINE1 SINE B4 104 149 -16 1 963 390 288 118 29 chr3 49586770 49586906 -110012877 + RSINE1 SINE B4 18 165 0 1 963 273 305 32 89 chr3 49587245 49587361 -110012422 + MT2B2 LTR ERVL 53 160 -441 1 963 449 297 65 0 chr3 49587361 49587499 -110012284 + B1F1 SINE Alu 3 149 0 1 963 283 315 22 0 chr3 49587504 49587593 -110012190 + GA-rich Low_complexity Low_complexity 1 91 0 1 963 613 122 9 9 chr3 49587944 49588060 -110011723 + (TG)n Simple_repeat Simple_repeat 2 117 0 1 963 603 62 0 0 chr3 49588963 49589043 -110010740 + (TCTA)n Simple_repeat Simple_repeat 2 81 0 1 963 495 0 0 0 chr3 49589043 49589098 -110010685 + (TG)n Simple_repeat Simple_repeat 2 56 0 1 963 640 69 0 38 chr3 49589178 49589195 -110010588 + (TCC)n Simple_repeat Simple_repeat 2 18 0 1 963 1074 144 0 0 chr3 49589195 49589375 -110010408 + (TTC)n Simple_repeat Simple_repeat 1 180 0 1 963 640 69 0 38 chr3 49589375 49589462 -110010321 + (TCC)n Simple_repeat Simple_repeat 2 85 0 1 963 4467 97 11 0 chr3 49589470 49590090 -110009693 - Lx2A1 LINE L1 -11 6997 6371 1 963 565 42 0 0 chr3 49590091 49590163 -110009620 - BC1_Mm scRNA scRNA -79 73 2 1 963 555 90 89 11 chr3 49590163 49590253 -110009530 - Lx2A1 LINE L1 -609 6399 6303 1 963 549 0 0 0 chr3 49592842 49592903 -110006880 + (TG)n Simple_repeat Simple_repeat 2 62 0 1 963 788 282 87 17 chr3 49592915 49593146 -110006637 - B4A SINE B4 -27 265 19 1 963 1233 232 51 88 chr3 49593609 49594043 -110005740 + MTD LTR MaLR 1 418 -1 1 963 1423 119 0 9 chr3 49594062 49594283 -110005500 + L1Md_F2 LINE L1 6352 6570 -12 1 963 243 79 0 0 chr3 49594299 49594337 -110005446 + (A)n Simple_repeat Simple_repeat 1 38 0 1 963 403 262 0 53 chr3 49594896 49595009 -110004774 - MER20 DNA MER1_type 0 219 113 1 963 505 288 18 72 chr3 49596321 49596507 -110003276 - B3A SINE B2 -16 200 30 1 963 203 61 0 29 chr3 49596510 49596544 -110003239 + (CAAAAA)n Simple_repeat Simple_repeat 2 34 0 1 963 1490 187 62 34 chr3 49596544 49596667 -110003116 - RMER1A Other Other -10 1020 890 1 963 513 0 0 0 chr3 49596667 49596724 -110003059 + (CA)n Simple_repeat Simple_repeat 1 57 0 1 963 1490 187 62 34 chr3 49596724 49596954 -110002829 - RMER1A Other Other -141 889 657 1 963 395 342 12 0 chr3 49598552 49598713 -110001070 + RSINE1 SINE B4 3 165 0 1 963 2068 193 42 7 chr3 49599579 49599986 -109999797 + MTC LTR MaLR 1 421 0 1 963 960 237 0 36 chr3 49600408 49600627 -109999156 + B3 SINE B2 1 211 -5 1 963 36437 41 0 3 chr3 49600985 49607235 -109992548 - L1Md_T LINE L1 0 6585 256 1 963 455 299 20 34 chr3 49607949 49608098 -109991685 + RSINE1 SINE B4 3 149 -16 1 963 1181 215 97 14 chr3 49608944 49609077 -109990706 - Lx9 LINE L1 -6 7638 7487 1 963 441 0 0 0 chr3 49609077 49609126 -109990657 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 963 1181 215 97 14 chr3 49609126 49609341 -109990442 - Lx9 LINE L1 -158 7486 7261 1 963 762 248 13 0 chr3 49610064 49610213 -109989570 - B4A SINE B4 -19 273 123 1 963 320 337 42 0 chr3 49610456 49610551 -109989232 - B4A SINE B4 -192 100 2 1 963 321 302 34 91 chr3 49610601 49610776 -109989007 - RSINE1 SINE B4 0 165 1 1 963 1271 39 0 32 chr3 49611082 49611268 -109988515 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 1 963 504 86 0 0 chr3 49611271 49611341 -109988442 + (GGGAGA)n Simple_repeat Simple_repeat 4 73 0 1 963 1706 254 84 52 chr3 49612196 49612886 -109986897 + Lx8 LINE L1 6760 7471 -2 1 963 4240 187 55 61 chr3 49613032 49613287 -109986496 - RLTR25B LTR ERVK 0 1028 810 1 963 387 92 0 0 chr3 49613287 49613352 -109986431 + (TCTG)n Simple_repeat Simple_repeat 2 66 0 1 963 4240 187 55 61 chr3 49613352 49614130 -109985653 - RLTR25B LTR ERVK -219 809 1 1 963 333 0 0 0 chr3 49614139 49614176 -109985607 + (TA)n Simple_repeat Simple_repeat 1 37 0 1 963 377 340 25 19 chr3 49614711 49614873 -109984910 + RSINE1 SINE B4 3 165 0 1 963 22 0 0 0 chr3 49614944 49614966 -109984817 + AT_rich Low_complexity Low_complexity 1 22 0 1 963 266 82 0 39 chr3 49614982 49615033 -109984750 + (TCTCTG)n Simple_repeat Simple_repeat 2 50 0 1 963 234 0 0 0 chr3 49615034 49615060 -109984723 + (TG)n Simple_repeat Simple_repeat 1 26 0 1 963 423 302 24 59 chr3 49616521 49616690 -109983093 + MTEa LTR MaLR 4 166 -213 1 963 21 0 0 0 chr3 49618155 49618176 -109981607 + AT_rich Low_complexity Low_complexity 1 21 0 1 963 189 171 0 0 chr3 49618315 49618350 -109981433 + A-rich Low_complexity Low_complexity 1 35 0 1 963 24 0 0 0 chr3 49618902 49618926 -109980857 + AT_rich Low_complexity Low_complexity 1 24 0 1 963 328 404 19 33 chr3 49619102 49619317 -109980466 + ID_B1 SINE B4 10 221 -3 1 963 549 371 37 14 chr3 49619461 49619677 -109980106 + B4A SINE B4 68 288 -4 1 963 546 16 0 0 chr3 49619755 49619818 -109979965 + (CA)n Simple_repeat Simple_repeat 2 64 0 1 963 222 308 0 44 chr3 49620194 49620262 -109979521 + PB1D10 SINE Alu 46 110 -7 1 963 288 154 0 0 chr3 49620266 49620318 -109979465 + (TG)n Simple_repeat Simple_repeat 1 52 0 1 963 792 256 96 32 chr3 49620365 49620786 -109978997 + RMER15 LTR ERVL 7 514 -61 1 963 4105 42 2 0 chr3 49620786 49621284 -109978499 - L1Md_T LINE L1 -1 6581 6083 1 963 35616 56 5 10 chr3 49621284 49626549 -109973234 - L1Md_T LINE L1 -330 5553 307 1 963 38286 8 0 0 chr3 49626744 49632099 -109967684 + L1Md_A LINE L1 232 5586 -297 1 963 8853 5 0 16 chr3 49632099 49633111 -109966672 + L1Md_A LINE L1 5587 6582 0 1 963 22 0 0 0 chr3 49633111 49633133 -109966650 + AT_rich Low_complexity Low_complexity 1 22 0 1 963 540 48 12 23 chr3 49633441 49633527 -109966256 + (TCTA)n Simple_repeat Simple_repeat 4 88 0 1 963 2579 131 5 37 chr3 49633628 49634058 -109965725 - Lx2 LINE L1 -1 6996 6581 1 963 233 353 22 45 chr3 49634267 49634356 -109965427 + PB1D10 SINE Alu 17 103 -14 1 963 180 0 0 0 chr3 49636835 49636855 -109962928 + (CAA)n Simple_repeat Simple_repeat 2 21 0 1 963 210 37 0 0 chr3 49637034 49637061 -109962722 + (TTG)n Simple_repeat Simple_repeat 1 27 0 1 963 1876 223 19 14 chr3 49637637 49638056 -109961727 - MTC LTR MaLR 0 421 1 1 963 233 273 152 0 chr3 49640462 49640561 -109959222 + PB1D10 SINE Alu 1 114 -3 1 963 400 72 14 14 chr3 49640593 49640663 -109959120 + (CA)n Simple_repeat Simple_repeat 2 71 0 1 963 864 287 43 21 chr3 49641974 49642209 -109957574 + B4A SINE B4 5 244 -48 1 963 183 80 0 0 chr3 49642214 49642239 -109957544 + (TG)n Simple_repeat Simple_repeat 2 26 0 1 963 532 200 0 11 chr3 49643312 49643494 -109956289 + (TG)n Simple_repeat Simple_repeat 1 180 0 1 963 282 235 25 0 chr3 49643494 49643575 -109956208 + (TCTG)n Simple_repeat Simple_repeat 2 84 0 1 963 318 26 0 0 chr3 49643576 49643615 -109956168 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 963 237 375 28 28 chr3 49643751 49643858 -109955925 + RSINE1 SINE B4 49 155 -10 1 963 485 254 2 5 chr3 49644002 49644120 -109955663 + B3A SINE B2 1 115 -78 1 963 255 360 39 29 chr3 49644683 49644889 -109954894 - MIR SINE MIR -36 226 19 1 963 267 244 135 34 chr3 49645654 49645743 -109954040 - PB1D7 SINE Alu -18 102 5 1 963 529 292 62 6 chr3 49645665 49645827 -109953956 - ID_B1 SINE B4 -53 171 1 1 963 188 170 0 19 chr3 49647273 49647327 -109952456 + (TTTA)n Simple_repeat Simple_repeat 4 56 0 1 963 192 77 0 0 chr3 49647705 49647731 -109952052 + (ATG)n Simple_repeat Simple_repeat 3 28 0 1 963 5887 119 87 19 chr3 49647842 49649004 -109950779 - Lx LINE L1 -6 6648 5407 1 963 780 161 7 7 chr3 49649017 49649161 -109950622 + L1_Mur2 LINE L1 5246 5389 -488 1 963 597 336 18 0 chr3 49650619 49650839 -109948944 + ID_B1 SINE B4 1 224 0 1 963 243 0 0 0 chr3 49650924 49650951 -109948832 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 963 1611 156 24 20 chr3 49650952 49651246 -109948537 - ORR1A1 LTR MaLR -51 295 1 1 963 2073 51 11 14 chr3 49651676 49651955 -109947828 - L1Md_F3 LINE L1 -12 6572 6295 1 963 723 39 29 0 chr3 49652088 49652191 -109947592 + (TCTA)n Simple_repeat Simple_repeat 1 106 0 1 963 22 0 0 0 chr3 49652368 49652390 -109947393 + AT_rich Low_complexity Low_complexity 1 22 0 1 963 301 156 26 0 chr3 49653088 49653165 -109946618 + GA-rich Low_complexity Low_complexity 1 79 0 1 963 552 271 15 29 chr3 49653879 49654016 -109945767 + B3A SINE B2 2 136 -62 1 963 702 247 0 0 chr3 49654041 49654187 -109945596 + B1_Mus1 SINE Alu 3 148 0 1 963 222 116 0 0 chr3 49654192 49654235 -109945548 + (CAGA)n Simple_repeat Simple_repeat 4 46 0 1 963 23 0 0 0 chr3 49654559 49654582 -109945201 + AT_rich Low_complexity Low_complexity 1 23 0 1 963 427 366 26 21 chr3 49654583 49654773 -109945010 + MER47B DNA MER2_type 1 191 -227 1 963 270 319 99 6 chr3 49655009 49655170 -109944613 + MER47B DNA MER2_type 223 398 -20 1 963 280 205 229 0 chr3 49655238 49655321 -109944462 - MTEa LTR MaLR 0 379 278 1 963 215 155 13 66 chr3 49655685 49655761 -109944022 + (TTATA)n Simple_repeat Simple_repeat 5 76 0 1 963 24 67 0 0 chr3 49656539 49656584 -109943199 + AT_rich Low_complexity Low_complexity 1 45 0 1 963 184 162 0 26 chr3 49656898 49656936 -109942847 + MIR SINE MIR 37 73 -135 2 963 227 173 19 0 chr3 49659146 49659198 -109940585 + (CAT)n Simple_repeat Simple_repeat 2 54 0 2 963 617 295 28 24 chr3 49659494 49659734 -109940049 + ORR1E LTR MaLR 3 248 -122 2 963 216 0 0 0 chr3 49659850 49659874 -109939909 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2 963 462 18 0 0 chr3 49661193 49661248 -109938535 + (TG)n Simple_repeat Simple_repeat 2 56 0 2 963 188 347 132 25 chr3 49661759 49661880 -109937903 - MIRc SINE MIR -121 147 14 2 963 22 0 0 0 chr3 49662564 49662586 -109937197 + AT_rich Low_complexity Low_complexity 1 22 0 2 963 296 277 85 0 chr3 49662619 49662713 -109937070 - L1MA6 LINE L1 -38 6262 6161 2 963 700 300 124 31 chr3 49663161 49663419 -109936364 + B4A SINE B4 11 292 0 2 963 214 333 0 0 chr3 49663421 49663493 -109936290 + (CA)n Simple_repeat Simple_repeat 1 72 0 2 963 2100 239 225 3 chr3 49663545 49664159 -109935624 - RMER1A Other Other -4 1026 277 2 963 601 322 68 42 chr3 49664263 49664663 -109935120 + MLT1A LTR MaLR 3 408 0 2 963 6357 82 4 0 chr3 49665410 49666249 -109933534 - L1_Mus2 LINE L1 -2 6564 5723 2 963 7832 91 0 4 chr3 49666246 49667344 -109932439 + L1_Mm LINE L1 4197 5290 -593 2 963 464 311 40 0 chr3 49667767 49667915 -109931868 - RSINE1 SINE B4 -2 163 10 2 963 297 387 88 4 chr3 49668274 49668500 -109931283 - L2 LINE L2 -688 2731 2487 2 963 398 289 171 13 chr3 49668514 49668635 -109931148 + B3 SINE B2 16 162 -54 2 963 567 0 0 0 chr3 49668635 49668698 -109931085 + (CA)n Simple_repeat Simple_repeat 1 63 0 2 963 398 289 171 13 chr3 49668698 49668734 -109931049 + B3 SINE B2 163 198 -18 2 963 539 323 106 20 chr3 49668762 49669110 -109930673 - L2 LINE L2 -946 2473 2096 2 963 21 0 0 0 chr3 49669457 49669478 -109930305 + AT_rich Low_complexity Low_complexity 1 21 0 2 963 29 0 0 0 chr3 49669528 49669557 -109930226 + AT_rich Low_complexity Low_complexity 1 29 0 2 963 235 235 0 19 chr3 49669567 49669619 -109930164 + BC1_Mm scRNA scRNA 37 87 -65 2 963 824 283 101 34 chr3 49673782 49674049 -109925734 + B4 SINE B4 1 285 -7 2 963 212 0 36 0 chr3 49674202 49674230 -109925553 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 2 963 548 285 113 49 chr3 49674891 49675138 -109924645 + B4 SINE B4 5 267 -25 2 963 450 0 0 0 chr3 49675593 49675643 -109924140 + (TC)n Simple_repeat Simple_repeat 2 51 0 2 963 266 67 22 0 chr3 49675874 49675919 -109923864 + (CAAA)n Simple_repeat Simple_repeat 2 47 0 2 964 192 200 0 0 chr3 49677545 49677585 -109922198 + (CATG)n Simple_repeat Simple_repeat 3 42 0 2 964 504 349 81 36 chr3 49678128 49678461 -109921322 + ORR1E LTR MaLR 6 353 -6 2 964 937 282 58 29 chr3 49678464 49678555 -109921228 + ORR1E-int LTR MaLR 2 105 -1475 2 964 504 0 0 0 chr3 49678555 49678611 -109921172 + (TTTA)n Simple_repeat Simple_repeat 1 56 0 2 964 937 282 58 29 chr3 49678611 49678862 -109920921 + ORR1E-int LTR MaLR 106 354 -1226 2 964 300 185 152 0 chr3 49678898 49678990 -109920793 - Lx9 LINE L1 -21 7623 7518 2 964 432 0 0 0 chr3 49678990 49679038 -109920745 + (CA)n Simple_repeat Simple_repeat 2 49 0 2 964 1036 281 26 6 chr3 49679038 49679349 -109920434 - Lx9 LINE L1 -188 7456 7140 2 964 3182 54 5 2 chr3 49679359 49679770 -109920013 - L1Md_F2 LINE L1 0 6582 6171 2 964 6065 57 1 0 chr3 49679770 49680848 -109918935 + L1Md_F2 LINE L1 5129 6552 -448 2 964 505 329 16 90 chr3 49681637 49681948 -109917835 - Looper DNA PiggyBac -591 967 680 2 964 321 125 0 0 chr3 49682192 49682248 -109917535 + (GGA)n Simple_repeat Simple_repeat 2 57 0 2 964 1590 172 190 25 chr3 49682961 49683355 -109916428 + RMER6B LTR ERVK 3 461 0 2 964 21 57 0 0 chr3 49684146 49684181 -109915602 + AT_rich Low_complexity Low_complexity 1 35 0 2 964 421 271 53 0 chr3 49684291 49684442 -109915341 + GA-rich Low_complexity Low_complexity 4 162 0 2 964 29 28 0 0 chr3 49685147 49685183 -109914600 + AT_rich Low_complexity Low_complexity 1 36 0 2 964 986 251 122 21 chr3 49686209 49686546 -109913237 + MTEb LTR MaLR 1 371 -8 2 964 256 260 45 107 chr3 49687025 49687137 -109912646 - ORR1E LTR MaLR -157 202 98 2 964 812 99 28 7 chr3 49687834 49687976 -109911807 + L1_Mus3 LINE L1 6482 6626 -12 2 964 8052 45 3 0 chr3 49687985 49689306 -109910477 - L1Md_F2 LINE L1 -19 6563 5238 2 964 22 88 0 0 chr3 49689879 49689936 -109909847 + AT_rich Low_complexity Low_complexity 1 57 0 2 964 206 105 26 0 chr3 49690401 49690439 -109909344 + (TTG)n Simple_repeat Simple_repeat 2 40 0 2 964 183 257 101 63 chr3 49692203 49692282 -109907501 - L4 LINE RTE -218 1811 1730 2 964 212 262 229 0 chr3 49692914 49693036 -109906747 - L2a LINE L2 -34 3392 3243 2 964 1207 261 67 56 chr3 49693053 49693340 -109906443 + MTE2b LTR MaLR 1 299 -80 2 964 4515 59 25 33 chr3 49693340 49693968 -109905815 + L1_Mus2 LINE L1 5944 6566 0 2 964 1207 261 67 56 chr3 49693968 49694053 -109905730 + MTE2b LTR MaLR 300 377 -2 2 964 1170 117 0 0 chr3 49694516 49694695 -109905088 + (TTTTC)n Simple_repeat Simple_repeat 2 180 0 2 964 204 67 0 0 chr3 49694834 49694864 -109904919 + (TCTG)n Simple_repeat Simple_repeat 4 33 0 2 964 349 189 11 11 chr3 49694901 49694992 -109904791 + CT-rich Low_complexity Low_complexity 2 92 0 2 964 815 194 0 0 chr3 49694997 49695141 -109904642 - B1_Mus1 SINE Alu -1 147 4 2 964 21 36 0 0 chr3 49695162 49695190 -109904593 + AT_rich Low_complexity Low_complexity 1 28 0 2 964 593 296 293 28 chr3 49695263 49695777 -109904006 + MLT1E1 LTR MaLR 4 653 -1 2 964 1956 161 41 240 chr3 49696387 49697094 -109902689 + RMER19C LTR ERVK 1 570 -41 2 964 249 57 0 0 chr3 49697094 49697129 -109902654 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 2 964 1956 161 41 240 chr3 49697129 49697183 -109902600 + RMER19C LTR ERVK 571 610 -1 2 964 23 54 0 0 chr3 49698328 49698365 -109901418 + AT_rich Low_complexity Low_complexity 1 37 0 2 964 1412 294 95 35 chr3 49698609 49699518 -109900265 + L1MC1 LINE L1 5348 6310 -23 2 964 376 308 176 0 chr3 49699604 49699786 -109899997 + B3 SINE B2 2 215 -1 2 964 230 385 0 0 chr3 49700032 49700110 -109899673 - ID4_ SINE ID 0 83 6 2 964 282 132 35 24 chr3 49700155 49700193 -109899590 + T-rich Low_complexity Low_complexity 48 88 0 2 964 1091 82 0 20 chr3 49700193 49700342 -109899441 - B1_Mm SINE Alu 0 147 2 2 964 282 132 35 24 chr3 49700342 49700388 -109899395 + T-rich Low_complexity Low_complexity 3 47 0 2 964 28 48 0 0 chr3 49700516 49700558 -109899225 + AT_rich Low_complexity Low_complexity 1 42 0 2 964 181 288 16 63 chr3 49700743 49700806 -109898977 - L2 LINE L2 -3289 130 71 2 964 1925 182 233 50 chr3 49700885 49701612 -109898171 + RMER6C LTR ERVK 1 720 0 2 964 27 29 0 0 chr3 49701617 49701651 -109898132 + AT_rich Low_complexity Low_complexity 1 34 0 2 964 180 125 0 0 chr3 49703904 49703936 -109895847 + (GGGA)n Simple_repeat Simple_repeat 4 35 0 2 964 2297 98 3 58 chr3 49704230 49704576 -109895207 + ORR1A2 LTR MaLR 1 327 0 2 964 270 276 23 11 chr3 49705323 49705411 -109894372 - MER53 DNA hAT -65 128 40 2 964 658 65 9 18 chr3 49705615 49705725 -109894058 + L1_Mus4 LINE L1 6521 6629 -7 2 964 227 200 0 0 chr3 49705730 49705780 -109894003 + A-rich Low_complexity Low_complexity 6 55 0 2 964 219 36 0 0 chr3 49706991 49707019 -109892764 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 2 964 459 0 0 0 chr3 49707580 49707631 -109892152 + (CA)n Simple_repeat Simple_repeat 1 51 0 2 964 221 156 44 0 chr3 49708609 49708654 -109891129 + T-rich Low_complexity Low_complexity 3 49 0 2 964 585 347 78 57 chr3 49708705 49708986 -109890797 - B4A SINE B4 0 292 6 2 964 960 266 12 31 chr3 49709906 49710162 -109889621 + MTD LTR MaLR 4 254 -165 2 964 300 231 25 13 chr3 49710177 49710256 -109889527 + MTD LTR MaLR 340 419 0 2 964 673 264 131 13 chr3 49710328 49710642 -109889141 + Lx9 LINE L1 7287 7637 -7 2 964 826 288 28 43 chr3 49710884 49711138 -109888645 + Lx5 LINE L1 6794 7043 -7 2 964 508 214 8 25 chr3 49711156 49711276 -109888507 + PB1D9 SINE Alu 1 118 -2 2 964 725 287 85 25 chr3 49711692 49712046 -109887737 + MTEa LTR MaLR 5 379 0 2 964 624 303 69 29 chr3 49716985 49717260 -109882523 + B4A SINE B4 5 290 -2 2 964 198 0 0 0 chr3 49717802 49717824 -109881959 + (CA)n Simple_repeat Simple_repeat 2 23 0 2 964 294 95 0 0 chr3 49718582 49718624 -109881159 + (T)n Simple_repeat Simple_repeat 1 42 0 2 964 700 311 11 1 chr3 49718683 49718883 -109880900 + B3A SINE B2 5 212 -4 2 964 507 95 0 0 chr3 49719200 49719274 -109880509 + (CA)n Simple_repeat Simple_repeat 1 74 0 2 964 563 307 18 118 chr3 49719331 49719560 -109880223 - ID_B1 SINE B4 -18 206 1 2 964 2061 135 0 0 chr3 49720715 49721033 -109878750 + ORR1A3 LTR MaLR 1 318 -8 2 964 760 295 62 36 chr3 49721523 49721818 -109877965 - RLTR16 LTR ERVK -339 353 15 2 964 382 317 64 64 chr3 49721860 49722062 -109877721 + MIRb SINE MIR 56 257 -11 2 964 312 318 89 60 chr3 49723064 49723546 -109876237 + L1MC3 LINE L1 6706 7201 -584 2 964 359 238 157 23 chr3 49723773 49723945 -109875838 + L1MC3 LINE L1 7577 7771 -14 2 964 225 298 0 0 chr3 49723959 49724080 -109875703 + GA-rich Low_complexity Low_complexity 3 123 0 2 964 346 136 0 24 chr3 49725027 49725110 -109874673 + (TA)n Simple_repeat Simple_repeat 2 82 0 2 964 612 63 0 0 chr3 49725160 49725239 -109874544 + B1_Mm SINE Alu 64 142 -5 2 964 480 215 0 0 chr3 49725251 49725358 -109874425 + (TATATG)n Simple_repeat Simple_repeat 2 108 0 2 964 271 288 96 0 chr3 49725532 49725605 -109874178 - ID4 SINE ID -3 80 1 2 964 652 310 23 69 chr3 49725766 49726071 -109873712 + B4A SINE B4 1 291 -1 2 964 318 50 0 0 chr3 49727300 49727340 -109872443 + (TG)n Simple_repeat Simple_repeat 2 41 0 2 964 349 321 98 47 chr3 49727386 49727661 -109872122 - B4A SINE B4 -2 290 2 2 964 7656 35 1 8 chr3 49727884 49728810 -109870973 - L1Md_A LINE L1 -45 6537 5618 3 964 6619 93 40 10 chr3 49729338 49730309 -109869474 + Lx3_Mus LINE L1 6009 7008 -1 3 964 606 14 0 0 chr3 49730493 49730564 -109869219 + (CA)n Simple_repeat Simple_repeat 1 71 0 3 964 407 304 36 29 chr3 49731467 49731606 -109868177 - RSINE1 SINE B4 -22 143 4 3 964 231 306 58 96 chr3 49733594 49733782 -109866001 + MLT1D LTR MaLR 54 234 -271 3 964 504 86 0 0 chr3 49733850 49733920 -109865863 + (TCCCC)n Simple_repeat Simple_repeat 2 71 0 3 964 256 167 54 36 chr3 49734566 49734622 -109865161 + Lx2 LINE L1 5553 5609 -268 3 964 6497 184 5 18 chr3 49734627 49735874 -109863909 + Lx2 LINE L1 5765 6995 -2 3 964 261 0 0 0 chr3 49735881 49735910 -109863873 + (CAAAC)n Simple_repeat Simple_repeat 2 30 0 3 964 775 273 97 17 chr3 49736142 49736503 -109863280 + Lx7 LINE L1 7044 7433 -263 3 964 262 287 0 73 chr3 49736498 49736607 -109863176 + Lx7 LINE L1 7577 7677 -19 3 964 23 0 0 0 chr3 49736619 49736642 -109863141 + AT_rich Low_complexity Low_complexity 1 23 0 3 964 276 100 0 0 chr3 49736836 49736876 -109862907 + (TA)n Simple_repeat Simple_repeat 2 41 0 3 964 570 99 0 0 chr3 49737555 49737646 -109862137 + (TCTG)n Simple_repeat Simple_repeat 4 94 0 3 964 2212 165 53 75 chr3 49738218 49738252 -109861531 + RLTR20C LTR ERVK 1 30 -504 3 964 1071 90 0 0 chr3 49738252 49738397 -109861386 + B1_Mus2 SINE Alu 3 147 0 3 964 2212 165 53 75 chr3 49738397 49738814 -109860969 + RLTR20C LTR ERVK 31 442 -92 3 964 234 329 25 0 chr3 49739999 49740078 -109859705 + MIR SINE MIR 96 176 -86 3 964 22 0 0 0 chr3 49740431 49740453 -109859330 + AT_rich Low_complexity Low_complexity 1 22 0 3 964 526 143 0 0 chr3 49742095 49742179 -109857604 + Lx2B LINE L1 6228 6311 -689 3 964 551 203 100 17 chr3 49742180 49742300 -109857483 + B3 SINE B2 1 130 -86 3 964 356 0 23 0 chr3 49742522 49742566 -109857217 + (CA)n Simple_repeat Simple_repeat 1 45 0 3 964 777 230 59 10 chr3 49742821 49743023 -109856760 - B3 SINE B2 0 216 5 3 964 208 181 71 12 chr3 49743116 49743200 -109856583 + (TA)n Simple_repeat Simple_repeat 1 89 0 3 964 254 291 23 16 chr3 49744307 49744436 -109855347 + CT-rich Low_complexity Low_complexity 1 130 0 3 964 748 178 210 5 chr3 49744554 49744740 -109855043 - URR1B DNA MER1_type 0 225 2 3 964 202 118 0 29 chr3 49745486 49745521 -109854262 + (GAAAA)n Simple_repeat Simple_repeat 5 38 0 3 964 380 344 153 9 chr3 49746482 49746711 -109853072 - RMER15 LTR ERVL -18 557 296 3 964 893 234 53 80 chr3 49746827 49746866 -109852917 - MT2B LTR ERVL -89 512 468 3 964 639 39 0 0 chr3 49746866 49746944 -109852839 + (TA)n Simple_repeat Simple_repeat 2 79 0 3 964 893 247 75 69 chr3 49746944 49747360 -109852423 - MT2B LTR ERVL -134 467 1 3 964 221 59 77 19 chr3 49747732 49747784 -109851999 + (TTTG)n Simple_repeat Simple_repeat 4 58 0 3 964 189 74 0 0 chr3 49748230 49748257 -109851526 + (CAA)n Simple_repeat Simple_repeat 1 27 0 3 964 374 151 14 0 chr3 49749248 49749321 -109850462 + GA-rich Low_complexity Low_complexity 3 76 0 3 964 183 211 77 0 chr3 49749507 49749559 -109850224 + L3 LINE CR1 1363 1418 -3071 3 964 338 326 76 15 chr3 49749968 49750099 -109849684 + MLT1A1 LTR MaLR 268 406 -2 3 964 3432 55 5 7 chr3 49751288 49751778 -109848005 - L1Md_F2 LINE L1 -570 6012 5524 3 964 1745 89 38 26 chr3 49751779 49752044 -109847739 + L1_Mus1 LINE L1 6300 6567 0 3 964 1528 162 55 0 chr3 49752076 49752347 -109847436 + Lx2 LINE L1 6712 6997 0 3 964 368 222 148 0 chr3 49754705 49754813 -109844970 + RSINE1 SINE B4 9 132 -33 3 964 435 119 0 0 chr3 49754821 49754888 -109844895 + (GA)n Simple_repeat Simple_repeat 1 67 0 3 964 1337 61 0 6 chr3 49754891 49755072 -109844711 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 3 964 723 71 0 0 chr3 49755078 49755176 -109844607 + (GGGA)n Simple_repeat Simple_repeat 4 101 0 3 964 3388 77 0 17 chr3 49755464 49755926 -109843857 - LTRIS2 LTR ERV1 -79 485 32 3 964 612 122 10 0 chr3 49755928 49756026 -109843757 - MuRRS4-int LTR ERV1 -158 4905 4807 3 964 11225 53 2 3 chr3 49756026 49757442 -109842341 + L1_Mm LINE L1 4062 5476 -407 3 964 4011 55 2 4 chr3 49757442 49757956 -109841827 + L1Md_F3 LINE L1 6072 6584 0 3 964 11225 53 2 3 chr3 49757956 49757970 -109841813 + L1_Mm LINE L1 5477 5490 -393 3 964 1411 279 51 19 chr3 49758066 49758494 -109841289 - MuRRS4-int LTR ERV1 -917 4146 3705 3 964 2185 67 0 11 chr3 49758504 49758790 -109840993 - MuRRS4-int LTR ERV1 -1559 3504 3222 3 964 270 269 7 14 chr3 49759187 49759334 -109840449 + GA-rich Low_complexity Low_complexity 4 149 0 3 964 972 161 6 0 chr3 49759399 49759567 -109840216 + L1_Mur2 LINE L1 3760 3928 -1952 3 964 2060 158 3 6 chr3 49759574 49759924 -109839859 + L1_Mur2 LINE L1 4166 4514 -1363 3 964 270 284 31 10 chr3 49761797 49761893 -109837890 + PB1D9 SINE Alu 4 101 -19 3 964 232 315 14 0 chr3 49761923 49761996 -109837787 + G-rich Low_complexity Low_complexity 3 76 0 3 964 395 349 26 0 chr3 49762012 49762204 -109837579 - B3A SINE B2 0 198 2 3 964 402 121 0 0 chr3 49762352 49762418 -109837365 + (TC)n Simple_repeat Simple_repeat 2 67 0 3 964 480 77 0 0 chr3 49762432 49762497 -109837286 + (CA)n Simple_repeat Simple_repeat 1 65 0 3 964 862 100 7 14 chr3 49763435 49763577 -109836206 - Lx LINE L1 -5 6649 6509 3 964 21 57 0 0 chr3 49763845 49763880 -109835903 + AT_rich Low_complexity Low_complexity 1 35 0 3 964 606 272 6 41 chr3 49764855 49765024 -109834759 - RSINE1 SINE B4 0 165 3 3 964 294 256 12 6 chr3 49766557 49766722 -109833061 + (CA)n Simple_repeat Simple_repeat 1 166 0 3 964 2693 180 6 2 chr3 49767289 49767769 -109832014 + L1_Mur2 LINE L1 5376 5857 -20 3 964 1287 282 20 25 chr3 49767767 49768238 -109831545 + Lx5 LINE L1 6495 6995 -63 3 964 1152 106 0 0 chr3 49768243 49768422 -109831361 + (GGAA)n Simple_repeat Simple_repeat 1 179 0 3 964 354 23 0 0 chr3 49768685 49768728 -109831055 + (TTTTG)n Simple_repeat Simple_repeat 2 44 0 3 964 1098 95 0 0 chr3 49768728 49768866 -109830917 - B1_Mus1 SINE Alu -9 139 2 3 964 1161 92 0 0 chr3 49770648 49770812 -109828971 + (GGAA)n Simple_repeat Simple_repeat 3 166 0 3 964 519 354 78 9 chr3 49772125 49772356 -109827427 - B4A SINE B4 -12 280 34 3 964 2036 88 81 0 chr3 49773198 49773493 -109826290 - ORR1A2 LTR MaLR -8 319 1 3 964 808 123 7 7 chr3 49773755 49773902 -109825881 + (TTTC)n Simple_repeat Simple_repeat 1 147 0 3 964 2709 127 2 5 chr3 49773908 49774327 -109825456 + L1_Mur2 LINE L1 4818 5235 -642 3 964 558 312 0 13 chr3 49775051 49775210 -109824573 - RSINE1 SINE B4 -6 159 3 3 964 314 188 0 0 chr3 49775223 49775292 -109824491 + (TAA)n Simple_repeat Simple_repeat 3 71 0 3 964 29 0 0 0 chr3 49775848 49775877 -109823906 + AT_rich Low_complexity Low_complexity 1 29 0 3 964 222 150 0 0 chr3 49777623 49777663 -109822120 + (CA)n Simple_repeat Simple_repeat 1 40 0 3 964 349 308 93 42 chr3 49777988 49778181 -109821602 - B3 SINE B2 -11 205 3 3 964 467 251 48 48 chr3 49778213 49778401 -109821382 - Lx8 LINE L1 -3 7470 7283 3 964 873 177 177 0 chr3 49778414 49778606 -109821177 - URR1A DNA MER1_type 0 226 1 3 964 24 0 0 0 chr3 49778649 49778673 -109821110 + AT_rich Low_complexity Low_complexity 1 24 0 3 964 432 0 0 0 chr3 49778720 49778768 -109821015 + (CA)n Simple_repeat Simple_repeat 1 48 0 3 964 1054 223 188 110 chr3 49778825 49779266 -109820517 - MT2A LTR ERVL -71 462 1 3 964 655 287 27 0 chr3 49779266 49779454 -109820329 - Lx8 LINE L1 -227 7246 7054 3 964 1701 288 116 11 chr3 49779490 49780223 -109819560 + Lx8 LINE L1 6212 7021 -452 3 964 575 289 16 16 chr3 49780353 49780558 -109819225 + MLT1B LTR MaLR 13 213 -254 3 964 313 327 18 73 chr3 49780672 49780781 -109819002 + ID_B1 SINE B4 82 184 -40 3 964 231 309 22 6 chr3 49780821 49780934 -109818849 + GA-rich Low_complexity Low_complexity 1 114 0 3 964 268 304 83 62 chr3 49780934 49781078 -109818705 + MLT1B LTR MaLR 241 387 -3 3 964 678 335 56 27 chr3 49781082 49781177 -109818606 + Lx8 LINE L1 6929 7027 -446 3 964 4815 176 36 33 chr3 49781177 49782082 -109817701 + RMER13B LTR ERVK 1 908 0 3 964 678 335 56 27 chr3 49782082 49782394 -109817389 + Lx8 LINE L1 7028 7348 -125 3 964 187 254 55 0 chr3 49782725 49782780 -109817003 + L2a LINE L2 3364 3421 -5 3 964 958 229 55 17 chr3 49783341 49783634 -109816149 - Lx9 LINE L1 -238 7406 7103 3 964 1288 153 38 17 chr3 49783633 49783872 -109815911 - Lx2B LINE L1 -247 6753 6510 3 964 279 206 14 3 chr3 49783869 49783960 -109815823 + Lx3C LINE L1 6904 6974 -2 3 964 3332 234 28 13 chr3 49783972 49784767 -109815016 - Lx9 LINE L1 -532 7112 6306 3 964 517 226 67 73 chr3 49784797 49785097 -109814686 - Lx9 LINE L1 -1398 6246 5849 3 964 1572 203 102 23 chr3 49785097 49785254 -109814529 + ORR1C1 LTR MaLR 3 165 -213 3 964 618 14 0 0 chr3 49785254 49785325 -109814458 + (TC)n Simple_repeat Simple_repeat 2 72 0 3 964 1572 203 102 23 chr3 49785325 49785399 -109814384 + ORR1C1 LTR MaLR 166 267 -111 3 964 7719 80 15 1 chr3 49785399 49786408 -109813375 - RLTR13D5 LTR ERVK 0 1023 1 3 964 1572 203 102 23 chr3 49786408 49786518 -109813265 + ORR1C1 LTR MaLR 268 371 -7 3 964 685 250 48 43 chr3 49786518 49786612 -109813171 - Lx9 LINE L1 -37 5810 5725 3 964 4302 68 23 0 chr3 49786612 49787171 -109812612 - L1_Mus2 LINE L1 -1 6565 5994 3 964 685 250 48 43 chr3 49787171 49787306 -109812477 - Lx9 LINE L1 -123 5724 5580 3 964 610 270 19 23 chr3 49788275 49788454 -109811329 + MTD LTR MaLR 1 203 -216 3 964 1787 293 42 24 chr3 49788561 49789450 -109810333 - L1MC1 LINE L1 0 6333 5429 3 964 731 288 33 45 chr3 49789545 49789876 -109809907 - Lx6 LINE L1 -27 7433 7107 3 964 932 300 60 41 chr3 49789917 49790598 -109809185 - L1MC1 LINE L1 -748 5398 4705 3 964 1790 135 46 28 chr3 49790767 49791045 -109808738 + RMER17A2 LTR ERVK 1 293 -613 3 964 809 74 30 0 chr3 49791045 49791180 -109808603 + (TC)n Simple_repeat Simple_repeat 1 139 0 3 964 1790 159 34 44 chr3 49791180 49791456 -109808327 + RMER17A2 LTR ERVK 294 809 0 3 964 539 207 83 0 chr3 49791784 49791905 -109807878 + B1_Mur4 SINE Alu 1 131 -19 3 964 275 200 0 0 chr3 49791907 49791957 -109807826 + RMER17A2 LTR ERVK 74 123 -783 3 964 264 167 0 0 chr3 49791995 49792043 -109807740 + (TATATG)n Simple_repeat Simple_repeat 3 50 0 3 964 433 284 41 35 chr3 49792564 49792761 -109807022 + B3A SINE B2 1 198 0 3 964 7343 38 0 0 chr3 49793098 49794014 -109805769 - L1Md_T LINE L1 0 6582 5667 3 964 364 191 43 0 chr3 49794023 49794117 -109805666 - Lx9 LINE L1 -25 7619 7522 3 964 357 24 0 0 chr3 49794173 49794215 -109805568 + (TG)n Simple_repeat Simple_repeat 2 43 0 3 964 2228 233 33 33 chr3 49794216 49794847 -109804936 - Lx9 LINE L1 -225 7419 6789 3 964 187 180 44 103 chr3 49796047 49796115 -109803668 - L3 LINE CR1 -4416 73 10 4 964 2433 139 7 62 chr3 49796210 49796661 -109803122 + Lx LINE L1 6220 6645 -9 4 964 405 0 0 0 chr3 49797387 49797432 -109802351 + (TG)n Simple_repeat Simple_repeat 1 45 0 4 964 642 296 26 0 chr3 49797449 49797601 -109802182 - B3A SINE B2 -41 157 2 4 964 31364 86 24 9 chr3 49797616 49803663 -109796120 - L1Md_F2 LINE L1 -1 6581 446 4 964 505 238 182 7 chr3 49803871 49804019 -109795764 + B3 SINE B2 10 183 -33 4 964 21 36 0 0 chr3 49804623 49804651 -109795132 + AT_rich Low_complexity Low_complexity 1 28 0 4 964 27 0 0 0 chr3 49804722 49804749 -109795034 + AT_rich Low_complexity Low_complexity 1 27 0 4 964 26 0 0 0 chr3 49806598 49806624 -109793159 + AT_rich Low_complexity Low_complexity 1 26 0 4 964 279 221 28 49 chr3 49806793 49806936 -109792847 + T-rich Low_complexity Low_complexity 4 143 0 4 964 186 118 0 0 chr3 49806949 49806983 -109792800 + (TTTG)n Simple_repeat Simple_repeat 3 36 0 4 964 635 234 14 20 chr3 49806989 49807137 -109792646 - B1_Mur2 SINE Alu -1 148 2 4 120 2935 78 5 5 chr3 49807143 49807542 -109792241 + MTB LTR MaLR 2 400 0 4 965 259 368 47 23 chr3 49808163 49808291 -109791492 + MER63C DNA AcHobo 263 393 -537 4 965 256 340 33 53 chr3 49808318 49808470 -109791313 - MIR SINE MIR -110 152 4 4 965 25 31 0 0 chr3 49808572 49808604 -109791179 + AT_rich Low_complexity Low_complexity 1 32 0 4 965 9126 102 16 11 chr3 49809301 49810384 -109789399 - Lx3_Mus LINE L1 0 7009 5918 4 965 309 26 0 0 chr3 49810384 49810422 -109789361 + (TTG)n Simple_repeat Simple_repeat 2 39 0 4 965 9126 92 5 4 chr3 49810422 49811236 -109788547 - Lx3_Mus LINE L1 -1092 5917 5111 4 965 475 238 198 38 chr3 49811384 49811541 -109788242 - MTD LTR MaLR -191 228 47 4 965 378 188 0 0 chr3 49811541 49811605 -109788178 + Lx4A LINE L1 6288 6351 -707 4 965 1227 185 39 27 chr3 49811611 49811701 -109788082 + Lx4A LINE L1 6797 6886 -172 4 965 2353 88 3 0 chr3 49811701 49812009 -109787774 + RLTR27 LTR ERVK 1 309 0 4 965 1227 185 39 27 chr3 49812009 49812174 -109787609 + Lx4A LINE L1 6887 7055 -3 4 965 225 224 51 17 chr3 49812193 49812252 -109787531 - MTD LTR MaLR -358 61 1 4 965 6776 83 35 11 chr3 49812380 49813262 -109786521 - L1_Mus3 LINE L1 0 6638 5746 4 965 2009 121 101 61 chr3 49813262 49813719 -109786064 - IAPLTR2_Mm LTR ERVK 0 475 1 4 965 6776 97 22 16 chr3 49813719 49814093 -109785690 - L1_Mus3 LINE L1 -138 5745 5372 4 965 212 0 0 35 chr3 49814597 49814626 -109785157 + (TA)n Simple_repeat Simple_repeat 2 29 0 4 965 630 39 0 0 chr3 49814763 49814840 -109784943 + (TG)n Simple_repeat Simple_repeat 1 77 0 4 965 258 257 7 169 chr3 49817413 49817549 -109782234 + MLT1A LTR MaLR 4 117 -257 4 965 210 353 111 8 chr3 49817558 49817675 -109782108 + L2a LINE L2 3298 3426 0 4 965 345 47 0 0 chr3 49817747 49817790 -109781993 + (TG)n Simple_repeat Simple_repeat 2 44 0 4 965 366 23 0 0 chr3 49819227 49819270 -109780513 + (TG)n Simple_repeat Simple_repeat 1 43 0 4 965 873 90 104 0 chr3 49819977 49820111 -109779672 - L1Md_F2 LINE L1 -12 6570 6423 4 965 22 0 0 0 chr3 49820149 49820171 -109779612 + AT_rich Low_complexity Low_complexity 1 22 0 4 965 414 0 0 0 chr3 49820603 49820649 -109779134 + (TA)n Simple_repeat Simple_repeat 1 46 0 4 965 981 0 0 0 chr3 49820882 49820991 -109778792 + (GGGAGA)n Simple_repeat Simple_repeat 1 109 0 4 965 3140 51 8 8 chr3 49821307 49821703 -109778080 - MTA_Mm LTR MaLR 0 396 1 4 965 243 232 52 26 chr3 49821819 49821934 -109777849 - L1MD LINE L1 -925 5434 5317 4 965 282 235 48 24 chr3 49823211 49823294 -109776489 - Charlie5 DNA MER1_type -2515 109 25 4 965 574 294 64 64 chr3 49824395 49824678 -109775105 + B4A SINE B4 2 284 -8 4 965 1441 152 16 8 chr3 49824852 49825104 -109774679 + Lx4A LINE L1 6257 6510 -548 4 965 2185 82 94 0 chr3 49825110 49825429 -109774354 - IAPEY2_LTR LTR ERVK 0 357 9 4 965 3052 153 28 44 chr3 49825436 49825982 -109773801 + Lx4A LINE L1 6520 7056 -2 4 965 310 298 121 60 chr3 49827029 49827211 -109772572 + HAL1-3A_ME LINE L1 2251 2443 -415 4 965 5969 128 22 19 chr3 49827685 49828665 -109771118 - RLTR13C1 LTR ERVK 0 983 1 4 965 1034 39 8 0 chr3 49829523 49829652 -109770131 - RLTR1B LTR ERV1 -382 130 1 4 965 1979 98 87 162 chr3 49829769 49829853 -109769930 - RLTR9C LTR ERVK 0 393 295 4 965 486 0 0 0 chr3 49829853 49829907 -109769876 + (GA)n Simple_repeat Simple_repeat 1 54 0 4 965 1979 98 87 162 chr3 49829907 49830247 -109769536 - RLTR9C LTR ERVK -99 294 1 4 965 271 104 0 69 chr3 49831335 49831407 -109768376 + (TTTG)n Simple_repeat Simple_repeat 2 68 0 4 965 500 262 52 93 chr3 49831849 49832228 -109767555 + ORR1E LTR MaLR 9 371 -8 4 965 1001 221 11 5 chr3 49832669 49832860 -109766923 - B3 SINE B2 -17 199 8 4 965 288 359 0 42 chr3 49833099 49833195 -109766588 + PB1D10 SINE Alu 19 110 -7 4 965 380 257 64 83 chr3 49834306 49834463 -109765320 + HAL1 LINE L1 117 270 -2237 4 965 400 297 83 64 chr3 49834769 49835129 -109764654 + HAL1 LINE L1 660 1026 -1481 4 965 523 304 60 0 chr3 49835268 49835436 -109764347 + B3A SINE B2 3 180 -18 4 965 222 128 0 0 chr3 49835492 49835531 -109764252 + (CA)n Simple_repeat Simple_repeat 2 40 0 4 965 23 33 0 0 chr3 49835976 49836006 -109763777 + AT_rich Low_complexity Low_complexity 1 30 0 4 965 1467 232 57 39 chr3 49836523 49836980 -109762803 - RLTR11A2 LTR ERVK -62 465 1 4 965 1224 94 0 0 chr3 49838835 49839049 -109760734 + (CATATA)n Simple_repeat Simple_repeat 1 214 0 4 965 363 23 0 0 chr3 49839082 49839126 -109760657 + (CA)n Simple_repeat Simple_repeat 2 45 0 4 965 287 257 7 0 chr3 49839418 49839562 -109760221 + CT-rich Low_complexity Low_complexity 2 146 0 4 965 222 208 0 0 chr3 49840525 49840578 -109759205 + (CATATA)n Simple_repeat Simple_repeat 6 58 0 4 965 319 293 103 8 chr3 49841667 49841784 -109757999 - B1F SINE Alu -9 140 13 4 965 249 341 106 34 chr3 49841696 49841875 -109757908 - B4 SINE B4 -95 197 6 4 965 348 24 0 0 chr3 49842170 49842211 -109757572 + (TC)n Simple_repeat Simple_repeat 2 42 0 4 965 497 280 44 22 chr3 49842300 49842435 -109757348 + B1F SINE Alu 5 142 -7 4 965 237 365 48 14 chr3 49842887 49843034 -109756749 - Charlie1 DNA MER1_type -2602 179 28 4 965 1045 212 128 36 chr3 49843314 49843618 -109756165 + IAPEY3_LTR LTR ERVK 1 332 0 4 965 1095 266 95 0 chr3 49844796 49845142 -109754641 - MTEa LTR MaLR 0 379 1 4 965 195 42 0 0 chr3 49846037 49846061 -109753722 + (TGAG)n Simple_repeat Simple_repeat 4 27 0 4 965 21 0 0 0 chr3 49846116 49846137 -109753646 + AT_rich Low_complexity Low_complexity 1 21 0 4 965 210 158 0 0 chr3 49846319 49846357 -109753426 + (TTTG)n Simple_repeat Simple_repeat 4 41 0 4 965 207 0 0 0 chr3 49846395 49846418 -109753365 + (TAAAA)n Simple_repeat Simple_repeat 2 24 0 4 965 181 283 112 40 chr3 49847096 49847221 -109752562 - MIR SINE MIR -2 260 127 4 965 296 301 70 0 chr3 49847553 49847696 -109752087 + L1MA6 LINE L1 6147 6299 -1 4 965 661 291 66 17 chr3 49848132 49848419 -109751364 + Lx8 LINE L1 7076 7376 -97 4 965 23 33 0 0 chr3 49848458 49848488 -109751295 + AT_rich Low_complexity Low_complexity 1 30 0 4 965 180 301 82 24 chr3 49849321 49849406 -109750377 + MIR SINE MIR 111 200 -62 4 965 203 320 254 0 chr3 49849709 49849831 -109749952 + MIR SINE MIR 43 195 -67 4 965 455 156 261 45 chr3 49850513 49850647 -109749136 - Lx4A LINE L1 -1170 5888 5726 4 965 2294 185 17 0 chr3 49850648 49851053 -109748730 + Lx4A LINE L1 6642 7053 -5 4 965 5942 199 36 5 chr3 49851749 49851887 -109747896 + L1_Mur3 LINE L1 3923 4084 -1796 4 965 450 0 0 0 chr3 49851887 49851937 -109747846 + (TCTA)n Simple_repeat Simple_repeat 3 52 0 4 965 5942 199 36 5 chr3 49851937 49853198 -109746585 + L1_Mur3 LINE L1 4085 5364 -516 4 965 6291 160 6 17 chr3 49853197 49854505 -109745278 + L1_Mur2 LINE L1 3314 4525 -1358 4 965 513 0 0 0 chr3 49854505 49854562 -109745221 + (TCTA)n Simple_repeat Simple_repeat 4 60 0 4 965 5953 169 5 80 chr3 49854562 49854675 -109745108 + L1_Mur2 LINE L1 4526 4634 -1249 4 965 4773 113 52 3 chr3 49854678 49855433 -109744350 + Lx LINE L1 5862 6653 -1 4 965 1748 59 8 25 chr3 49855489 49855733 -109744050 - L1_Mus2 LINE L1 0 6566 6327 4 965 1364 187 66 0 chr3 49855762 49856051 -109743732 + Lx5 LINE L1 5437 5744 -133 4 965 1153 114 35 22 chr3 49856058 49856311 -109743472 - RLTR10A LTR ERVK 0 411 117 4 965 1322 280 98 20 chr3 49856374 49857300 -109742483 + Lx5 LINE L1 5751 6778 -272 4 965 784 228 75 28 chr3 49857298 49857510 -109742273 + Lx5 LINE L1 7210 7431 -29 4 965 33925 46 0 3 chr3 49857616 49862938 -109736845 + L1Md_T LINE L1 188 5589 -297 4 965 8493 30 0 1 chr3 49862938 49863935 -109735848 + L1Md_T LINE L1 5590 6585 0 4 965 224 279 0 0 chr3 49864207 49864286 -109735497 + T-rich Low_complexity Low_complexity 1 79 0 4 965 983 85 43 0 chr3 49864295 49864436 -109735347 - B1_Mm SINE Alu 0 147 1 4 965 2819 165 8 10 chr3 49864436 49864929 -109734854 - Lx2 LINE L1 -21 6976 6482 4 965 356 156 159 30 chr3 49864965 49865097 -109734686 + Lx9 LINE L1 7369 7517 -127 4 965 249 325 0 0 chr3 49865104 49865218 -109734565 + (CATA)n Simple_repeat Simple_repeat 4 117 0 4 965 740 159 119 30 chr3 49865218 49865419 -109734364 + Lx9 LINE L1 7419 7637 -7 4 965 351 302 13 67 chr3 49865586 49865735 -109734048 + B4A SINE B4 1 141 -151 4 965 263 288 30 15 chr3 49865784 49865851 -109733932 + RSINE1 SINE B4 82 149 -16 4 965 279 0 0 0 chr3 49865865 49865896 -109733887 + (CA)n Simple_repeat Simple_repeat 1 31 0 4 965 187 304 168 34 chr3 49866935 49867054 -109732729 - L3 LINE CR1 -416 4073 3939 4 965 264 322 119 50 chr3 49867100 49867319 -109732464 - RMER5 LTR ERV1 -235 299 66 4 965 225 0 0 0 chr3 49867775 49867800 -109731983 + (T)n Simple_repeat Simple_repeat 1 25 0 4 965 416 357 56 0 chr3 49868228 49868354 -109731429 - RSINE1 SINE B4 -7 158 26 4 965 713 300 19 103 chr3 49868790 49869255 -109730528 - Lx8 LINE L1 0 7473 7048 4 965 234 91 0 0 chr3 49869275 49869308 -109730475 + (T)n Simple_repeat Simple_repeat 1 33 0 4 965 460 194 0 39 chr3 49869326 49869455 -109730328 - L1Md_A LINE L1 0 6582 6459 5 965 1461 68 0 0 chr3 49869455 49869645 -109730138 + L1_Mus1 LINE L1 6171 6360 -207 5 965 794 125 164 30 chr3 49869682 49869847 -109729936 + B2_Mm2 SINE B2 3 189 -6 5 965 356 209 26 43 chr3 49870176 49870291 -109729492 + CT-rich Low_complexity Low_complexity 1 113 0 5 965 1811 165 22 28 chr3 49870454 49870815 -109728968 - RLTR15 LTR ERVK 0 359 1 5 965 25 31 0 0 chr3 49871216 49871248 -109728535 + AT_rich Low_complexity Low_complexity 1 32 0 5 965 472 322 46 40 chr3 49871279 49871431 -109728352 - B3A SINE B2 -4 194 42 5 965 552 332 101 16 chr3 49871576 49871833 -109727950 - MLT2B4 LTR ERVL -264 292 14 5 965 253 274 47 18 chr3 49873799 49873970 -109725813 + (CA)n Simple_repeat Simple_repeat 1 176 0 5 965 1281 0 0 0 chr3 49874862 49875010 -109724773 - L1Md_A LINE L1 0 6582 6435 5 965 1790 268 96 11 chr3 49875930 49876528 -109723255 + RCHARR1 DNA MER1_type 8 698 -276 5 965 2500 176 181 4 chr3 49876528 49877047 -109722736 + RMER19C LTR ERVK 1 611 0 5 965 598 216 47 74 chr3 49877047 49877095 -109722688 + RCHARR1 DNA MER1_type 699 738 -236 5 965 2238 85 45 6 chr3 49877095 49877427 -109722356 - L1_Mus4 LINE L1 -9 6627 6283 5 965 598 216 47 74 chr3 49877427 49877570 -109722213 + RCHARR1 DNA MER1_type 739 888 -86 5 965 1113 93 0 0 chr3 49878352 49878513 -109721270 - Lx LINE L1 -220 6434 6274 5 965 580 229 176 0 chr3 49878552 49878740 -109721043 - URR1B DNA MER1_type 0 225 5 5 965 488 86 0 0 chr3 49879079 49879149 -109720634 + RLTR12B LTR ERVK 1 70 -458 5 965 3171 92 19 9 chr3 49879146 49879609 -109720174 - MT2C_Mm LTR ERVL -7 468 1 5 965 2848 157 2 23 chr3 49879609 49880080 -109719703 + RLTR12B LTR ERVK 68 528 0 5 965 379 320 148 105 chr3 49880081 49880454 -109719329 + MER63C DNA AcHobo 221 609 -321 5 965 261 93 56 0 chr3 49880627 49880681 -109719102 + (TG)n Simple_repeat Simple_repeat 2 58 0 5 965 10880 163 45 19 chr3 49881297 49883355 -109716428 - L1_Mur3 LINE L1 -1047 4833 2707 5 965 1750 248 137 6 chr3 49883355 49883895 -109715888 - RMER19C LTR ERVK 0 611 1 5 965 10880 163 45 19 chr3 49883895 49884206 -109715577 - L1_Mur3 LINE L1 -3174 2706 2403 5 965 6279 125 2 3 chr3 49884201 49885359 -109714424 - L1_Mus3 LINE L1 -670 5966 4811 5 965 3916 109 68 3 chr3 49885359 49885976 -109713807 + L1_Mus3 LINE L1 5975 6631 -7 5 965 1558 143 50 30 chr3 49885997 49886336 -109713447 - L1_Mur3 LINE L1 -3460 2420 2075 5 965 240 35 0 0 chr3 49886346 49886375 -109713408 + (TGG)n Simple_repeat Simple_repeat 2 30 0 5 965 1798 230 88 50 chr3 49886377 49886982 -109712801 - L1_Mur3 LINE L1 -6804 924 297 5 965 5447 122 9 6 chr3 49887677 49888494 -109711289 - Lx LINE L1 -5 6649 5831 5 965 1494 291 22 25 chr3 49888822 49889441 -109710342 - Lx6 LINE L1 -26 7434 6429 5 965 536 40 27 0 chr3 49889443 49889517 -109710266 + (TTCC)n Simple_repeat Simple_repeat 3 78 0 5 965 702 288 87 34 chr3 49889520 49889945 -109709838 - Lx5 LINE L1 -709 6751 6086 5 965 367 286 0 0 chr3 49889964 49890055 -109709728 + Lx6 LINE L1 5960 6050 -1410 5 965 25 51 0 0 chr3 49890141 49890180 -109709603 + AT_rich Low_complexity Low_complexity 1 39 0 5 965 273 151 0 0 chr3 49890914 49890967 -109708816 + (TG)n Simple_repeat Simple_repeat 2 54 0 5 965 21 0 0 0 chr3 49891222 49891243 -109708540 + AT_rich Low_complexity Low_complexity 1 21 0 5 965 311 313 52 22 chr3 49893338 49893472 -109706311 - MLT1D LTR MaLR -108 397 260 5 965 5566 28 0 0 chr3 49893857 49894545 -109705238 - L1Md_T LINE L1 -950 4933 4246 5 965 5303 19 0 0 chr3 49894543 49895185 -109704598 + L1Md_T LINE L1 4945 5586 -297 5 965 8118 40 16 0 chr3 49895185 49896165 -109703618 + L1Md_T LINE L1 5587 6582 0 5 965 371 317 117 0 chr3 49896176 49896296 -109703487 + RSINE1 SINE B4 3 136 -29 5 965 387 0 0 0 chr3 49896297 49896340 -109703443 + (CA)n Simple_repeat Simple_repeat 1 43 0 5 965 257 151 36 54 chr3 49897099 49897211 -109702572 + (TAGA)n Simple_repeat Simple_repeat 4 113 0 5 965 233 256 23 0 chr3 49897811 49897897 -109701886 + GA-rich Low_complexity Low_complexity 3 90 0 5 965 22 35 0 0 chr3 49899139 49899168 -109700615 + AT_rich Low_complexity Low_complexity 1 29 0 5 965 203 279 12 37 chr3 49899244 49899326 -109700457 + (TATATG)n Simple_repeat Simple_repeat 3 82 0 5 965 561 202 10 0 chr3 49899817 49899921 -109699862 + ORR1E LTR MaLR 1 105 -254 5 965 243 266 53 86 chr3 49900378 49900530 -109699253 + LTR37A LTR ERV1 62 208 -218 5 965 800 245 6 0 chr3 49901028 49901187 -109698596 - MER58B DNA MER1_type 0 341 182 5 965 529 327 65 25 chr3 49901482 49901758 -109698025 - RMER15 LTR ERVL -14 561 275 5 965 627 39 0 0 chr3 49902252 49902330 -109697453 + (TG)n Simple_repeat Simple_repeat 2 79 0 5 965 1339 266 38 9 chr3 49902412 49902757 -109697026 + MTE2b LTR MaLR 3 357 -22 5 965 452 371 6 18 chr3 49903610 49903780 -109696003 - B3A SINE B2 -30 168 1 5 965 634 221 82 16 chr3 49903853 49904097 -109695686 - Lx9 LINE L1 -3 7641 7382 5 965 627 105 108 39 chr3 49904293 49904422 -109695361 - L1Md_F2 LINE L1 0 6582 6445 5 965 348 102 34 0 chr3 49904421 49904480 -109695303 + L1Md_F2 LINE L1 6398 6458 -124 5 965 7406 86 36 5 chr3 49904658 49906446 -109693337 - L1_Mus2 LINE L1 0 6566 4725 5 965 229 217 0 0 chr3 49906446 49906492 -109693291 + L1VL1 LINE L1 36 81 -6341 5 965 427 313 96 58 chr3 49907201 49907357 -109692426 + RSINE1 SINE B4 4 165 0 5 965 7260 57 11 2 chr3 49907551 49908528 -109691255 + L1_Mm LINE L1 4182 5167 -716 5 965 203 200 18 0 chr3 49908632 49908687 -109691096 + T-rich Low_complexity Low_complexity 3 58 0 5 965 1374 63 5 21 chr3 49908816 49909009 -109690774 - L1_Mus2 LINE L1 -1 6565 6376 5 965 313 370 73 39 chr3 49909688 49909712 -109690071 + Charlie1a DNA MER1_type 161 184 -1271 5 965 3257 96 5 0 chr3 49909712 49910159 -109689624 + L1_Mus3 LINE L1 6189 6637 -1 5 965 313 370 73 39 chr3 49910159 49910573 -109689210 + Charlie1a DNA MER1_type 185 614 -841 5 965 328 309 36 14 chr3 49910786 49910924 -109688859 + B1F1 SINE Alu 1 141 -8 5 965 388 319 22 7 chr3 49913512 49913648 -109686135 - ID_B1 SINE B4 -6 218 81 5 965 22 70 0 0 chr3 49913698 49913741 -109686042 + AT_rich Low_complexity Low_complexity 1 43 0 5 965 751 261 18 18 chr3 49913888 49914052 -109685731 - B3 SINE B2 -5 211 48 5 965 2296 150 42 73 chr3 49914180 49914863 -109684920 + Lx4A LINE L1 598 1343 -5743 5 965 15620 127 54 17 chr3 49914862 49915405 -109684378 + Lx4A LINE L1 2892 3469 -2408 5 965 216 0 0 0 chr3 49915405 49915429 -109684354 + (CAAAA)n Simple_repeat Simple_repeat 1 24 0 5 965 15620 127 54 17 chr3 49915429 49916490 -109683293 + Lx4A LINE L1 3470 4620 -1257 5 965 228 35 0 0 chr3 49916490 49916519 -109683264 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 5 965 15620 127 54 17 chr3 49916519 49917115 -109682668 + Lx4A LINE L1 4621 5193 -684 5 965 2886 49 3 3 chr3 49917115 49917480 -109682303 - L1Md_F2 LINE L1 0 6582 6218 5 965 15620 148 55 13 chr3 49917480 49919271 -109680512 + Lx4A LINE L1 5194 7056 -2 5 965 23 0 0 0 chr3 49919271 49919294 -109680489 + AT_rich Low_complexity Low_complexity 1 23 0 5 965 31 0 0 0 chr3 49919927 49919958 -109679825 + AT_rich Low_complexity Low_complexity 1 31 0 5 965 781 200 7 35 chr3 49920040 49920185 -109679598 + B1_Mur3 SINE Alu 7 147 -2 5 965 513 32 0 0 chr3 49920185 49920248 -109679535 + (CATA)n Simple_repeat Simple_repeat 2 64 0 5 965 1295 261 49 10 chr3 49920379 49920685 -109679098 + MTD LTR MaLR 6 323 -96 5 965 1562 176 38 17 chr3 49920688 49920977 -109678806 - MTC LTR MaLR -2 419 125 5 965 546 99 32 21 chr3 49920963 49921056 -109678727 - RMER6A LTR ERVK -325 431 338 5 965 1459 347 4 14 chr3 49921194 49921680 -109678103 + MTE2b-int LTR MaLR 853 1333 -247 5 965 292 286 30 10 chr3 49921784 49921883 -109677900 - RLTR12B LTR ERVK -31 497 397 5 965 262 272 2 29 chr3 49921934 49922032 -109677751 - RLTR11B LTR ERVK -220 307 212 5 965 313 324 102 0 chr3 49922056 49922164 -109677619 - B3A SINE B2 -46 152 34 5 965 406 235 50 91 chr3 49922148 49922332 -109677451 + MTE2b-int LTR MaLR 1409 1701 -91 5 965 268 224 0 0 chr3 49922336 49922385 -109677398 + MTE2b LTR MaLR 1 49 -330 5 965 903 306 30 36 chr3 49922444 49922746 -109677037 - MTE2b LTR MaLR -79 300 1 5 965 705 319 98 11 chr3 49922746 49923031 -109676752 + MTE2b LTR MaLR 66 375 -4 5 965 1347 237 98 18 chr3 49923106 49923544 -109676239 + Lx2B LINE L1 6503 6975 -25 5 965 186 43 0 0 chr3 49923556 49923579 -109676204 + (TAG)n Simple_repeat Simple_repeat 1 23 0 5 965 273 57 0 0 chr3 49924337 49924372 -109675411 + (TG)n Simple_repeat Simple_repeat 2 36 0 5 965 21 36 0 0 chr3 49925290 49925318 -109674465 + AT_rich Low_complexity Low_complexity 1 28 0 5 965 587 213 77 57 chr3 49926067 49926261 -109673522 + B3A SINE B2 1 198 0 5 965 334 221 51 31 chr3 49926501 49926599 -109673184 - RMER12 LTR ERVK -481 841 742 5 965 394 342 40 75 chr3 49927741 49927994 -109671789 + B4A SINE B4 49 292 0 5 965 405 173 111 0 chr3 49928084 49928165 -109671618 - MTB LTR MaLR 0 400 311 5 965 1292 124 5 0 chr3 49928140 49928342 -109671441 - MTB LTR MaLR -197 203 1 5 965 525 94 0 0 chr3 49928640 49928725 -109671058 + (TG)n Simple_repeat Simple_repeat 2 86 0 5 965 226 288 71 16 chr3 49928776 49928903 -109670880 - L1M1 LINE L1 -399 5904 5771 5 965 8058 30 0 0 chr3 49928946 49929928 -109669855 - L1Md_F2 LINE L1 -4 6578 5597 5 965 21 0 0 0 chr3 49930268 49930289 -109669494 + AT_rich Low_complexity Low_complexity 1 21 0 5 965 1003 103 37 0 chr3 49930850 49930986 -109668797 + B1_Mus1 SINE Alu 1 141 -7 5 965 193 29 59 0 chr3 49930987 49931021 -109668762 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 5 965 233 337 47 0 chr3 49931464 49931476 -109668307 - ID_B1 SINE B4 -134 90 1 5 965 264 297 40 0 chr3 49931476 49931550 -109668233 - ID4 SINE ID -6 77 1 5 965 229 302 186 0 chr3 49931563 49931649 -109668134 - B1F SINE Alu -8 141 40 5 965 562 283 6 44 chr3 49931764 49931923 -109667860 + RSINE1 SINE B4 13 165 0 5 965 286 345 7 0 chr3 49931924 49932063 -109667720 + (TA)n Simple_repeat Simple_repeat 2 141 0 5 965 1800 179 66 9 chr3 49932071 49932404 -109667379 - ORR1B2 LTR MaLR -15 352 1 5 965 504 256 25 33 chr3 49932493 49932614 -109667169 - ID_B1 SINE B4 0 224 105 5 965 220 250 0 0 chr3 49932580 49932624 -109667159 - PB1D7 SINE Alu -63 57 14 5 965 1128 92 63 6 chr3 49935498 49935673 -109664110 + B2_Mm2 SINE B2 3 187 -8 5 965 313 316 10 30 chr3 49935897 49935998 -109663785 - MER70B LTR ERVL -230 348 250 5 965 267 330 0 52 chr3 49936011 49936107 -109663676 - MER70B LTR ERVL -398 180 90 5 965 242 129 45 61 chr3 49937209 49937275 -109662508 + A-rich Low_complexity Low_complexity 2 66 0 6 965 1836 74 4 0 chr3 49937312 49937555 -109662228 - L1_Mus1 LINE L1 -2 6565 6322 6 965 3776 132 4 26 chr3 49937591 49938410 -109661373 - L1Md_A LINE L1 -4456 1427 631 6 966 5628 84 4 0 chr3 49938435 49939196 -109660587 - L1_Mus1 LINE L1 -4 6563 5800 6 966 7026 76 9 4 chr3 49939427 49941015 -109658768 - L1Md_F2 LINE L1 -19 6563 4969 6 966 253 266 21 31 chr3 49941172 49941269 -109658514 - Lx9 LINE L1 -206 7438 7343 6 966 276 53 0 0 chr3 49941271 49941309 -109658474 + (TC)n Simple_repeat Simple_repeat 1 38 0 6 966 1456 260 40 35 chr3 49941311 49941829 -109657954 - Lx9 LINE L1 -290 7354 6834 6 966 1823 193 22 82 chr3 49941834 49942343 -109657440 - RMER1C Other Other -2 1340 863 6 966 359 314 8 0 chr3 49942331 49942455 -109657328 - RMER1B Other Other -884 182 58 6 966 1548 283 62 6 chr3 49942513 49943032 -109656751 - Lx9 LINE L1 -796 6848 6301 6 966 250 345 14 61 chr3 49943044 49943192 -109656591 + RMER12 LTR ERVK 708 848 -474 6 966 273 327 149 45 chr3 49943883 49944037 -109655746 + MER45A DNA Tip100 9 178 0 6 966 527 318 6 6 chr3 49944700 49944877 -109654906 - MLT1B LTR MaLR -134 256 80 6 966 557 261 40 40 chr3 49944880 49945028 -109654755 + B3A SINE B2 5 152 -46 6 966 30 27 0 0 chr3 49945056 49945093 -109654690 + AT_rich Low_complexity Low_complexity 1 37 0 6 966 278 241 24 48 chr3 49945093 49945176 -109654607 - MLT1B LTR MaLR -380 87 7 6 966 3195 156 55 68 chr3 49945176 49945795 -109653988 + RMER19C LTR ERVK 1 611 0 6 966 306 135 0 19 chr3 49945853 49945906 -109653877 + HAL1-3A_ME LINE L1 1976 2027 -831 6 966 274 314 152 46 chr3 49946578 49946775 -109653008 + B4 SINE B4 70 287 -5 6 966 3382 219 114 19 chr3 49946803 49947599 -109652184 + RLTR25B LTR ERVK 1 872 -156 6 966 3023 69 7 22 chr3 49947764 49948177 -109651606 - L1_Mus2 LINE L1 -4 6562 6156 6 966 557 90 0 0 chr3 49948177 49948255 -109651528 + L1_Mus2 LINE L1 6080 6157 -409 6 966 404 244 202 87 chr3 49948469 49948711 -109651072 + RLTR25B LTR ERVK 834 1103 0 6 966 495 160 0 0 chr3 49948711 49948805 -109650978 + (CA)n Simple_repeat Simple_repeat 1 94 0 6 966 584 276 15 15 chr3 49948998 49949134 -109650649 + RSINE1 SINE B4 7 142 -23 6 966 4980 91 16 3 chr3 49949197 49949894 -109649889 + L1_Mus4 LINE L1 5929 6634 -2 6 966 3540 50 2 2 chr3 49949952 49950394 -109649389 + L1Md_F2 LINE L1 5144 5585 -298 6 966 7672 60 1 22 chr3 49950395 49951400 -109648383 + L1Md_F2 LINE L1 5587 6570 -12 6 966 27 29 0 0 chr3 49951852 49951886 -109647897 + AT_rich Low_complexity Low_complexity 1 34 0 6 966 219 36 0 0 chr3 49953516 49953544 -109646239 + (CA)n Simple_repeat Simple_repeat 2 29 0 6 966 299 335 12 6 chr3 49953544 49953706 -109646077 - Lx9 LINE L1 -188 7456 7294 6 966 219 180 0 57 chr3 49954000 49954053 -109645730 + A-rich Low_complexity Low_complexity 3 52 0 6 966 2216 132 21 0 chr3 49955142 49955476 -109644307 - Lx4A LINE L1 -428 6630 6290 6 966 2277 170 15 61 chr3 49955476 49955933 -109643850 + Lx4A LINE L1 6621 7056 -2 6 966 22 0 0 0 chr3 49955933 49955955 -109643828 + AT_rich Low_complexity Low_complexity 1 22 0 6 966 277 379 52 15 chr3 49956598 49956732 -109643051 + B1F SINE Alu 3 141 -8 6 966 603 92 0 0 chr3 49956736 49956823 -109642960 + (TAGA)n Simple_repeat Simple_repeat 4 90 0 6 966 505 332 20 8 chr3 49956897 49957146 -109642637 + L1VL4 LINE L1 176 427 -5875 6 966 683 244 15 0 chr3 49957538 49957669 -109642114 - ETnERV2-int LTR ERVK -204 7202 7070 6 966 16830 148 31 11 chr3 49957677 49961288 -109638495 + L1VL4 LINE L1 789 4472 -1411 6 966 3936 116 2 5 chr3 49961288 49961870 -109637913 + L1_Mus4 LINE L1 6044 6623 -13 6 966 21 36 0 0 chr3 49961901 49961929 -109637854 + AT_rich Low_complexity Low_complexity 1 28 0 6 966 341 349 20 54 chr3 49962629 49962832 -109636951 + B4A SINE B4 51 246 -46 6 966 367 354 80 49 chr3 49962944 49963232 -109636551 + MER76 LTR ERVL 1 297 -394 6 966 989 75 28 11 chr3 49963682 49963858 -109635925 + (TAGA)n Simple_repeat Simple_repeat 2 180 0 6 966 1290 104 29 17 chr3 49963890 49964233 -109635550 + (TAGA)n Simple_repeat Simple_repeat 1 346 0 6 966 1104 78 27 19 chr3 49964252 49964515 -109635268 + (TAGA)n Simple_repeat Simple_repeat 1 264 0 6 966 308 111 56 0 chr3 49965664 49965736 -109634047 + (TA)n Simple_repeat Simple_repeat 1 76 0 6 966 946 286 111 35 chr3 49966125 49966280 -109633503 + RMER5 LTR ERV1 40 205 -329 6 966 1062 0 0 0 chr3 49966280 49966398 -109633385 + (TTC)n Simple_repeat Simple_repeat 2 119 0 6 966 946 286 111 35 chr3 49966398 49966702 -109633081 + RMER5 LTR ERV1 206 534 0 6 966 21 36 0 0 chr3 49966705 49966733 -109633050 + AT_rich Low_complexity Low_complexity 1 28 0 6 966 360 0 0 0 chr3 49967646 49967686 -109632097 + (TG)n Simple_repeat Simple_repeat 1 40 0 6 966 184 219 24 0 chr3 49967724 49967806 -109631977 + GA-rich Low_complexity Low_complexity 1 84 0 6 966 781 207 113 5 chr3 49967860 49968064 -109631719 + URR1A DNA MER1_type 1 226 0 6 966 1373 54 0 16 chr3 49968995 49969183 -109630600 + L1Md_F2 LINE L1 6395 6579 -3 6 966 344 307 77 18 chr3 49969444 49969613 -109630170 + B3A SINE B2 5 183 -15 6 966 387 0 0 0 chr3 49970512 49970555 -109629228 + (CA)n Simple_repeat Simple_repeat 2 44 0 6 966 2590 76 64 8 chr3 49971534 49971907 -109627876 - MTA_Mm LTR MaLR -2 394 1 6 966 466 303 106 6 chr3 49971971 49972150 -109627633 - ORR1E LTR MaLR -162 197 1 6 966 21 0 0 0 chr3 49972435 49972456 -109627327 + AT_rich Low_complexity Low_complexity 1 21 0 6 966 444 91 0 0 chr3 49972566 49972632 -109627151 + (TG)n Simple_repeat Simple_repeat 1 66 0 6 966 384 301 97 8 chr3 49972633 49972767 -109627016 - B3 SINE B2 -68 148 3 6 966 1873 158 13 3 chr3 49973475 49973786 -109625997 - ORR1A3 LTR MaLR 0 326 13 6 966 283 311 0 13 chr3 49973823 49973898 -109625885 + ID4 SINE ID 2 75 -8 6 966 570 15 0 0 chr3 49974204 49974271 -109625512 + (TG)n Simple_repeat Simple_repeat 2 68 0 6 966 1839 174 43 62 chr3 49974554 49974927 -109624856 - ORR1C1 LTR MaLR -12 366 1 6 966 415 49 0 16 chr3 49974994 49975056 -109624727 - L1Md_F2 LINE L1 -11 6571 6511 6 966 285 29 0 0 chr3 49975080 49975114 -109624669 + (TA)n Simple_repeat Simple_repeat 2 35 0 6 966 405 204 36 24 chr3 49975715 49975881 -109623902 + (TATAA)n Simple_repeat Simple_repeat 5 172 0 6 966 216 222 56 0 chr3 49975859 49975949 -109623834 + (TA)n Simple_repeat Simple_repeat 1 95 0 6 966 27 0 0 0 chr3 49976794 49976821 -109622962 + AT_rich Low_complexity Low_complexity 1 27 0 6 966 374 318 29 43 chr3 49976852 49976990 -109622793 + B1F SINE Alu 13 148 -1 6 966 2829 63 2 0 chr3 49977037 49977464 -109622319 - L1_Mus2 LINE L1 -617 5949 5522 6 966 630 143 0 0 chr3 49977462 49977567 -109622216 - L1_Mus2 LINE L1 -603 5280 5176 6 966 4589 105 6 9 chr3 49977567 49978231 -109621552 + L1_Mus3 LINE L1 5976 6637 -1 6 966 220 184 41 0 chr3 49979110 49979159 -109620624 + (CAGA)n Simple_repeat Simple_repeat 2 52 0 6 966 277 333 0 20 chr3 49979249 49979350 -109620433 - B4A SINE B4 -4 288 190 6 966 212 257 64 51 chr3 49979432 49979510 -109620273 - B3 SINE B2 -137 79 1 6 966 445 312 59 71 chr3 49979960 49980198 -109619585 + Cheshire DNA MER1_type 56 290 -2130 6 966 1193 74 0 6 chr3 49980305 49980469 -109619314 + L1_Mus1 LINE L1 6405 6567 0 6 966 299 281 20 30 chr3 49980509 49980608 -109619175 + MLT1A1 LTR MaLR 293 390 -18 6 966 377 95 16 0 chr3 49982108 49982171 -109617612 + (TTTTC)n Simple_repeat Simple_repeat 2 65 0 6 966 193 188 106 30 chr3 49982239 49982305 -109617478 + L2 LINE L2 2803 2873 -546 6 966 512 287 96 18 chr3 49983327 49983494 -109616289 + B3 SINE B2 9 188 -28 6 966 778 279 13 7 chr3 49983584 49983797 -109615986 - B3A SINE B2 -5 211 2 6 966 615 238 30 8 chr3 49983824 49983955 -109615828 + RSINE1 SINE B4 3 136 -29 6 966 444 302 250 14 chr3 49984355 49984563 -109615220 - B4A SINE B4 -18 274 18 6 966 1366 180 53 45 chr3 49985418 49985755 -109614028 - RMER6C LTR ERVK -4 686 347 6 966 476 174 0 156 chr3 49985767 49985876 -109613907 - MT2B LTR ERVL -314 287 196 6 966 252 0 0 0 chr3 49985942 49985970 -109613813 + (TA)n Simple_repeat Simple_repeat 1 28 0 6 966 182 82 78 52 chr3 49985974 49986051 -109613732 + (TCTA)n Simple_repeat Simple_repeat 4 82 0 6 966 644 264 151 63 chr3 49986377 49986648 -109613135 - MTE2a LTR MaLR 0 379 85 6 966 767 307 62 25 chr3 49986712 49986908 -109612875 + B4 SINE B4 8 204 -88 6 966 226 0 29 29 chr3 49986908 49986943 -109612840 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 6 966 767 307 62 25 chr3 49986943 49987020 -109612763 + B4 SINE B4 205 291 -1 6 966 306 138 70 26 chr3 49987027 49987183 -109612600 + (TAGA)n Simple_repeat Simple_repeat 2 164 0 6 966 254 205 80 24 chr3 49987196 49987321 -109612462 + (TAGA)n Simple_repeat Simple_repeat 4 135 0 6 966 721 313 65 8 chr3 49988548 49988809 -109610974 - B4A SINE B4 -16 276 1 6 966 403 278 109 60 chr3 49988820 49988849 -109610934 - B2_Mm2 SINE B2 -2 193 165 6 966 383 92 0 15 chr3 49988849 49988915 -109610868 + (TG)n Simple_repeat Simple_repeat 2 66 0 6 966 582 278 109 60 chr3 49988915 49989069 -109610714 - B3 SINE B2 -31 164 1 6 966 540 0 0 0 chr3 49989617 49989677 -109610106 + (TG)n Simple_repeat Simple_repeat 2 61 0 6 966 1316 68 0 4 chr3 49990850 49991116 -109608667 + (TTTC)n Simple_repeat Simple_repeat 1 264 0 6 966 2242 209 29 147 chr3 49991135 49991870 -109607913 - Lx6 LINE L1 0 7696 6791 6 966 5835 184 34 27 chr3 49991886 49993137 -109606646 - Lx4A LINE L1 -221 6837 5622 6 966 834 267 273 0 chr3 49993141 49993504 -109606279 - L1_Mur3 LINE L1 -6817 895 434 6 966 23990 75 8 11 chr3 49993504 49996797 -109602986 + L1Md_F2 LINE L1 2303 5585 -298 6 966 7269 84 8 4 chr3 49996798 49997789 -109601994 + L1Md_F2 LINE L1 5588 6582 0 6 966 1425 298 93 8 chr3 49997933 49998532 -109601251 - L1_Mur3 LINE L1 -7062 650 1 6 966 261 246 16 0 chr3 49999652 49999713 -109600070 - RMER5 LTR ERV1 -1 533 472 6 966 571 326 28 0 chr3 50000000 50000181 -109599602 - B3 SINE B2 -30 186 1 1 966 27 0 0 0 chr3 50002539 50002566 -109597217 + AT_rich Low_complexity Low_complexity 1 27 0 2 966 3036 86 0 28 chr3 50003398 50003831 -109595952 + BGLII LTR ERVK 1 421 0 3 966 584 317 81 25 chr3 50005468 50005788 -109593995 + MLT1B LTR MaLR 9 346 -44 4 966 411 300 171 0 chr3 50005940 50006080 -109593703 + B4 SINE B4 2 165 -127 5 966 895 278 24 27 chr3 50006249 50006541 -109593242 + B4 SINE B4 2 292 0 6 966 21 0 0 0 chr3 50007373 50007394 -109592389 + AT_rich Low_complexity Low_complexity 1 21 0 7 966 6256 171 45 20 chr3 50007399 50008625 -109591158 - Lx4A LINE L1 -7 7051 5796 8 966 570 71 0 0 chr3 50008625 50008709 -109591074 + (TC)n Simple_repeat Simple_repeat 1 84 0 9 966 13716 127 37 4 chr3 50008720 50010997 -109588786 - Lx4A LINE L1 -240 5637 3286 8 966 2151 72 7 0 chr3 50011404 50011681 -109588102 - L1_Mus1 LINE L1 -6 6561 6283 1 966 1369 176 25 0 chr3 50011856 50012094 -109587689 + RLTR11A LTR ERVK 1 244 -284 1 966 270 303 0 0 chr3 50012852 50012951 -109586832 - Lx9 LINE L1 -7 7637 7539 1 966 221 136 22 22 chr3 50013530 50013575 -109586208 + (TTTA)n Simple_repeat Simple_repeat 2 46 0 1 966 25 0 0 0 chr3 50015046 50015071 -109584712 + AT_rich Low_complexity Low_complexity 1 25 0 1 966 532 322 41 0 chr3 50015125 50015296 -109584487 + B3A SINE B2 3 180 -18 1 966 200 343 54 36 chr3 50015616 50015728 -109584055 - MIR3 SINE MIR -90 118 5 1 966 282 56 0 0 chr3 50016060 50016096 -109583687 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 1 966 3054 64 101 20 chr3 50017037 50017481 -109582302 - L1_Mus3 LINE L1 -6 6632 6153 1 966 534 31 0 0 chr3 50017945 50018009 -109581774 + (TG)n Simple_repeat Simple_repeat 2 65 0 1 966 279 0 0 0 chr3 50018392 50018423 -109581360 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 2 966 758 343 116 62 chr3 50020325 50020869 -109578914 - Zaphod DNA Tip100 -3448 583 11 2 966 30 77 0 0 chr3 50021148 50021213 -109578570 + AT_rich Low_complexity Low_complexity 1 65 0 2 966 1511 135 33 66 chr3 50021685 50022018 -109577765 - RLTRETN_Mm LTR ERVK 0 322 1 2 966 245 351 0 26 chr3 50023438 50023590 -109576193 + (GGGTG)n Simple_repeat Simple_repeat 4 151 0 2 966 782 313 89 26 chr3 50024017 50024479 -109575304 + L1M3b LINE L1 1480 1970 -4809 2 966 181 83 0 53 chr3 50024670 50024708 -109575075 + (GGA)n Simple_repeat Simple_repeat 2 37 0 2 966 379 277 82 64 chr3 50024723 50025109 -109574674 + L1M3b LINE L1 2138 2524 -4325 2 966 305 357 69 28 chr3 50025142 50025286 -109574497 + RSINE1 SINE B4 4 153 -12 2 966 342 0 0 0 chr3 50025289 50025327 -109574456 + (CA)n Simple_repeat Simple_repeat 2 39 0 2 966 247 107 13 51 chr3 50026026 50026105 -109573678 + T-rich Low_complexity Low_complexity 3 78 0 2 966 5823 124 44 8 chr3 50026795 50028035 -109571748 - Lx2 LINE L1 -428 6569 5285 3 966 1325 124 9 26 chr3 50028037 50028269 -109571514 + Lx2 LINE L1 6770 6997 0 3 966 351 0 0 0 chr3 50029422 50029461 -109570322 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 3 966 1167 29 0 0 chr3 50029461 50029597 -109570186 - B1_Mus2 SINE Alu -10 137 2 3 966 756 287 74 7 chr3 50030480 50030750 -109569033 + B4A SINE B4 4 291 -1 3 966 435 299 16 28 chr3 50030753 50030935 -109568848 + (CATA)n Simple_repeat Simple_repeat 1 180 0 3 966 371 286 56 70 chr3 50031561 50031704 -109568079 - B3A SINE B2 0 198 58 3 966 372 287 39 29 chr3 50032412 50032620 -109567163 - Lx8 LINE L1 -1578 5895 5686 3 966 192 78 14 86 chr3 50032975 50033045 -109566738 + (TATG)n Simple_repeat Simple_repeat 2 66 0 3 966 555 309 118 20 chr3 50033083 50033278 -109566505 - B4A SINE B4 -44 248 35 3 966 1080 114 6 29 chr3 50033294 50033465 -109566318 - URR1A DNA MER1_type -2 224 58 3 966 2641 61 0 0 chr3 50034096 50034424 -109565359 - L1_Mus2 LINE L1 -283 6283 5956 4 966 1897 45 28 4 chr3 50034424 50034672 -109565111 + L1_Mus2 LINE L1 6313 6566 0 4 966 1179 88 18 0 chr3 50034745 50034916 -109564867 + B2_Mm1t SINE B2 6 179 -14 4 966 191 250 15 0 chr3 50035301 50035369 -109564414 + (TA)n Simple_repeat Simple_repeat 2 70 0 4 966 183 179 0 0 chr3 50035908 50035936 -109563847 - L3 LINE CR1 -2840 1649 1622 4 966 376 284 59 0 chr3 50036854 50036956 -109562827 + PB1D10 SINE Alu 1 108 -9 4 966 420 67 0 0 chr3 50037656 50037716 -109562067 + (TG)n Simple_repeat Simple_repeat 2 61 0 4 966 934 268 41 54 chr3 50037742 50037920 -109561863 + Lx7 LINE L1 5393 5570 -277 4 966 1063 197 128 41 chr3 50037920 50038264 -109561519 - ORR1D1 LTR MaLR 0 374 1 4 966 934 269 61 45 chr3 50038264 50038612 -109561171 + Lx7 LINE L1 5571 5976 -1720 4 966 22 0 0 0 chr3 50038765 50038787 -109560996 + AT_rich Low_complexity Low_complexity 1 22 0 4 966 212 0 36 0 chr3 50039642 50039670 -109560113 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 4 966 1033 134 24 0 chr3 50040495 50040659 -109559124 + URR1B DNA MER1_type 58 225 0 5 966 369 330 120 59 chr3 50040685 50041142 -109558641 - L1MC LINE L1 -1143 5003 4519 5 966 749 294 134 89 chr3 50041224 50041583 -109558200 - MTE2a LTR MaLR -4 375 1 5 966 243 379 16 16 chr3 50041716 50041842 -109557941 - L2a LINE L2 -270 3156 3031 5 966 505 287 66 0 chr3 50042156 50042323 -109557460 + B4A SINE B4 112 289 -3 5 966 25 0 0 0 chr3 50043566 50043591 -109556192 + AT_rich Low_complexity Low_complexity 1 25 0 5 966 950 102 6 0 chr3 50043848 50044024 -109555759 + (GA)n Simple_repeat Simple_repeat 2 178 0 5 966 972 282 63 111 chr3 50044383 50044778 -109555005 - MTE2a LTR MaLR -2 377 2 5 966 3358 35 2 0 chr3 50044880 50045275 -109554508 - MTA_Mm LTR MaLR 0 396 1 5 966 595 314 14 10 chr3 50045537 50045746 -109554037 + B3 SINE B2 3 212 -4 5 966 659 274 181 23 chr3 50046236 50046628 -109553155 + Charlie10 DNA MER1_type 2058 2511 -311 6 966 1001 251 56 80 chr3 50046709 50046893 -109552890 - ORR1D2 LTR MaLR 0 370 196 6 966 762 204 0 0 chr3 50046893 50047030 -109552753 - B1_Mus2 SINE Alu -10 137 1 6 966 1001 251 56 80 chr3 50047030 50047221 -109552562 - ORR1D2 LTR MaLR -175 195 4 6 966 320 152 15 0 chr3 50047409 50047475 -109552308 + (CA)n Simple_repeat Simple_repeat 2 68 0 6 966 255 238 148 0 chr3 50047543 50047644 -109552139 + L1MD2 LINE L1 6226 6341 -18 6 966 500 344 77 56 chr3 50048351 50048674 -109551109 + MLT1G LTR MaLR 39 368 -223 6 966 653 269 40 0 chr3 50049532 50049707 -109550076 + B3A SINE B2 2 183 -15 6 966 6108 90 9 3 chr3 50050021 50050872 -109548911 - Lx3A LINE L1 0 6981 6126 6 966 2255 50 0 0 chr3 50051411 50051693 -109548090 - L1Md_A LINE L1 0 6582 6301 6 966 360 0 0 0 chr3 50053468 50053508 -109546275 + (TC)n Simple_repeat Simple_repeat 2 41 0 6 966 2843 83 3 3 chr3 50054860 50055248 -109544535 + MTA_Mm LTR MaLR 1 388 -8 7 966 215 95 48 0 chr3 50055872 50055914 -109543869 + (GAAAA)n Simple_repeat Simple_repeat 4 47 0 7 966 915 256 52 40 chr3 50055926 50056178 -109543605 - MTE2a LTR MaLR -122 257 3 7 966 433 294 127 41 chr3 50056178 50056494 -109543289 - L1MB5 LINE L1 -100 6080 5738 7 966 1181 294 61 20 chr3 50057030 50057574 -109542209 + Lx7 LINE L1 6768 7333 -363 7 966 232 190 28 42 chr3 50057590 50057681 -109542102 + T-rich Low_complexity Low_complexity 1 89 0 7 966 381 231 190 33 chr3 50057930 50058051 -109541732 - B1_Mus2 SINE Alu -1 146 7 7 966 651 303 44 8 chr3 50058057 50058440 -109541343 - L1MB5 LINE L1 -815 5331 4935 7 966 370 320 66 7 chr3 50058548 50058699 -109541084 - LTR52 LTR ERVL -250 171 12 7 966 1165 239 51 91 chr3 50059366 50059896 -109539887 - RMER17C-int LTR ERVK -2709 529 21 7 966 362 127 18 0 chr3 50059929 50059984 -109539799 + (GA)n Simple_repeat Simple_repeat 2 57 0 7 966 947 139 12 0 chr3 50059984 50060149 -109539634 + GA-rich Low_complexity Low_complexity 4 170 0 8 966 617 124 19 0 chr3 50060181 50060286 -109539497 + (GGAA)n Simple_repeat Simple_repeat 4 110 0 8 966 540 0 0 0 chr3 50060296 50060356 -109539427 + (GA)n Simple_repeat Simple_repeat 1 60 0 8 966 1244 138 174 88 chr3 50060359 50060710 -109539073 - RMER17C LTR ERVK -29 381 1 7 966 207 114 0 0 chr3 50060922 50060957 -109538826 + (GGGGA)n Simple_repeat Simple_repeat 1 35 0 8 966 225 184 0 0 chr3 50062470 50062508 -109537275 - MLT1F-int LTR MaLR -668 821 784 8 966 334 354 129 47 chr3 50065169 50065424 -109534359 + B4A SINE B4 1 276 -16 8 966 601 385 68 33 chr3 50067458 50067882 -109531901 - MLT2F LTR ERVL -23 640 202 8 966 550 283 81 0 chr3 50068146 50068319 -109531464 + L1M4b LINE L1 37 223 -7111 8 966 300 361 70 0 chr3 50068441 50068682 -109531101 + L1M4b LINE L1 650 907 -6427 8 966 976 99 0 7 chr3 50068977 50069129 -109530654 - L1_Mus4 LINE L1 -5 6631 6481 8 967 290 337 0 0 chr3 50069760 50069843 -109529940 - ERVL-B4-int LTR ERVL -2353 3314 3232 8 967 470 262 42 21 chr3 50069883 50070027 -109529756 + B1_Mur2 SINE Alu 1 147 -2 9 967 670 336 73 8 chr3 50070102 50070501 -109529282 - ERVL-B4-int LTR ERVL -2517 3197 2773 8 967 698 285 13 84 chr3 50070607 50070673 -109529110 + ID SINE ID 3 67 -157 9 967 1985 152 74 76 chr3 50070673 50071093 -109528690 + MTC LTR MaLR 1 419 -2 9 967 698 285 13 84 chr3 50071093 50071252 -109528531 + ID_B1 SINE B4 68 212 -12 9 967 261 0 0 0 chr3 50071388 50071417 -109528366 + (TG)n Simple_repeat Simple_repeat 1 29 0 9 967 378 0 0 0 chr3 50071417 50071458 -109528325 + (GA)n Simple_repeat Simple_repeat 1 42 0 9 967 819 341 40 11 chr3 50071460 50071736 -109528047 + B4A SINE B4 1 284 -8 9 967 381 43 0 0 chr3 50071762 50071809 -109527974 + (CA)n Simple_repeat Simple_repeat 2 48 0 9 967 687 242 73 0 chr3 50072078 50072243 -109527540 - B3 SINE B2 0 216 40 9 967 865 184 194 6 chr3 50072301 50072481 -109527302 - B3 SINE B2 -1 215 2 9 967 764 347 54 59 chr3 50072590 50073068 -109526715 + MER82 DNA MER2_type 169 644 -9 9 967 283 339 18 12 chr3 50073490 50073657 -109526126 - ERVL-E-int LTR ERVL -5436 231 64 1 967 335 272 58 14 chr3 50073806 50073944 -109525839 - MLT2F LTR ERVL -517 146 3 1 967 233 57 29 0 chr3 50075474 50075509 -109524274 + (TA)n Simple_repeat Simple_repeat 2 37 0 1 967 1111 7 29 0 chr3 50076481 50076619 -109523164 + (TTAG)n Simple_repeat Simple_repeat 3 144 0 1 967 205 240 155 62 chr3 50077104 50077233 -109522550 - MIRb SINE MIR -68 200 60 1 967 300 187 33 0 chr3 50077234 50077325 -109522458 + L1Md_F2 LINE L1 6489 6582 0 1 967 371 73 0 18 chr3 50077349 50077405 -109522378 + (GGGGA)n Simple_repeat Simple_repeat 4 58 0 1 967 1065 76 0 0 chr3 50077405 50077549 -109522234 + (GAAAA)n Simple_repeat Simple_repeat 1 144 0 1 967 1089 79 0 0 chr3 50077559 50077699 -109522084 + B1_Mus2 SINE Alu 2 141 -6 1 967 219 139 0 0 chr3 50077700 50077736 -109522047 + (A)n Simple_repeat Simple_repeat 1 36 0 1 967 25 31 0 0 chr3 50078280 50078312 -109521471 + AT_rich Low_complexity Low_complexity 1 32 0 1 967 507 270 65 14 chr3 50078426 50078565 -109521218 - ID_B1 SINE B4 0 224 79 1 967 439 332 181 0 chr3 50080198 50080430 -109519353 + B4 SINE B4 1 274 -18 1 967 195 42 0 0 chr3 50080440 50080464 -109519319 + (CCCCCA)n Simple_repeat Simple_repeat 6 29 0 1 967 32 0 0 0 chr3 50081714 50081746 -109518037 + AT_rich Low_complexity Low_complexity 1 32 0 1 967 672 74 0 0 chr3 50084139 50084234 -109515549 + (CA)n Simple_repeat Simple_repeat 2 96 0 1 967 396 59 0 0 chr3 50084234 50084285 -109515498 + (GA)n Simple_repeat Simple_repeat 1 51 0 1 967 315 0 0 0 chr3 50084513 50084548 -109515235 + (ATTG)n Simple_repeat Simple_repeat 2 36 0 1 967 22 0 0 0 chr3 50084860 50084882 -109514901 + AT_rich Low_complexity Low_complexity 1 22 0 1 967 421 189 135 0 chr3 50084983 50085094 -109514689 - B1F1 SINE Alu -2 147 22 1 967 949 0 0 25 chr3 50085095 50085214 -109514569 + (CATATA)n Simple_repeat Simple_repeat 2 117 0 1 967 488 206 107 0 chr3 50085746 50085877 -109513906 + B1_Mur2 SINE Alu 3 147 -2 1 967 263 277 61 26 chr3 50086223 50086338 -109513445 - LTR33B LTR ERVL 0 503 385 1 967 441 0 0 0 chr3 50086759 50086808 -109512975 + (CA)n Simple_repeat Simple_repeat 1 49 0 1 967 1329 146 4 26 chr3 50086882 50087108 -109512675 - URR1A DNA MER1_type 0 226 6 1 967 551 267 23 85 chr3 50087108 50087133 -109512650 + CYRA11_Mm Unknown Y-chromosome 210 406 -211 1 967 453 323 52 15 chr3 50087459 50087729 -109512054 - L1MB4 LINE L1 -31 6149 5870 1 967 1558 226 23 42 chr3 50087733 50087963 -109511820 - Lx6 LINE L1 -366 7094 6864 1 967 234 0 0 0 chr3 50087963 50087989 -109511794 + (TG)n Simple_repeat Simple_repeat 2 27 0 1 967 1558 226 23 42 chr3 50087989 50088188 -109511595 - Lx6 LINE L1 -597 6863 6673 1 967 724 181 105 6 chr3 50088259 50088431 -109511352 - B2_Mm2 SINE B2 -4 191 3 1 967 300 111 0 0 chr3 50089204 50089249 -109510534 + (CATATA)n Simple_repeat Simple_repeat 4 48 0 1 967 1335 290 61 84 chr3 50089557 50090178 -109509605 - RLTR18 LTR ERVK -1 615 9 1 967 527 157 9 0 chr3 50090460 50090568 -109509215 + GA-rich Low_complexity Low_complexity 2 110 0 1 967 228 384 0 0 chr3 50090646 50090719 -109509064 + MER3 DNA MER1_type 50 122 -87 1 967 873 71 0 0 chr3 50091908 50092034 -109507749 + (TCTA)n Simple_repeat Simple_repeat 4 129 0 1 967 252 0 0 0 chr3 50092118 50092146 -109507637 + (CA)n Simple_repeat Simple_repeat 1 28 0 1 967 446 261 0 0 chr3 50092168 50092279 -109507504 - Lx7 LINE L1 -389 7307 7197 1 967 301 360 118 46 chr3 50093329 50093609 -109506174 + MLT1E2 LTR MaLR 298 597 -83 1 967 222 105 0 0 chr3 50093654 50093692 -109506091 + (TTTC)n Simple_repeat Simple_repeat 2 39 0 1 967 1199 41 7 0 chr3 50093719 50093865 -109505918 - B1_Mus1 SINE Alu 0 148 2 1 967 23 0 0 0 chr3 50094552 50094575 -109505208 + AT_rich Low_complexity Low_complexity 1 23 0 1 967 475 311 79 20 chr3 50094692 50094895 -109504888 - MLT1K LTR MaLR -15 580 366 1 967 269 100 20 0 chr3 50095333 50095383 -109504400 + (TG)n Simple_repeat Simple_repeat 2 52 0 1 967 399 342 47 63 chr3 50095441 50095694 -109504089 - B4A SINE B4 -43 249 1 1 967 186 133 0 0 chr3 50095844 50095874 -109503909 + (TA)n Simple_repeat Simple_repeat 2 31 0 1 967 326 353 137 0 chr3 50095950 50096154 -109503629 - Tigger5 DNA MER2_type -2138 268 37 1 967 490 288 106 21 chr3 50096568 50096710 -109503073 + B3A SINE B2 1 154 -44 1 967 652 78 29 0 chr3 50096732 50096835 -109502948 + (CATA)n Simple_repeat Simple_repeat 2 107 0 1 967 1285 166 9 5 chr3 50097441 50097665 -109502118 + URR1B DNA MER1_type 1 225 0 1 967 6701 93 1 9 chr3 50097711 50098675 -109501108 + L1_Mus4 LINE L1 5679 6634 -2 1 967 737 344 56 25 chr3 50098772 50099094 -109500689 + MTEa LTR MaLR 3 334 -45 1 967 305 269 26 53 chr3 50099627 50099741 -109500042 - PB1D7 SINE Alu -8 112 2 1 967 232 229 29 0 chr3 50099992 50100062 -109499721 + (TA)n Simple_repeat Simple_repeat 2 73 0 1 967 486 46 0 0 chr3 50100466 50100531 -109499252 + (TAGA)n Simple_repeat Simple_repeat 4 68 0 1 967 25 0 0 0 chr3 50100536 50100561 -109499222 + AT_rich Low_complexity Low_complexity 1 25 0 1 967 510 17 0 0 chr3 50101358 50101417 -109498366 + (TG)n Simple_repeat Simple_repeat 1 59 0 1 967 414 267 53 40 chr3 50101418 50101570 -109498213 - RSINE1 SINE B4 -9 156 3 1 967 849 304 81 61 chr3 50103040 50103646 -109496137 - Lx8 LINE L1 -6 7467 6850 1 967 21 0 0 0 chr3 50103719 50103740 -109496043 + AT_rich Low_complexity Low_complexity 1 21 0 1 967 1180 82 6 17 chr3 50105679 50105853 -109493930 - L1_Mus1 LINE L1 0 6567 6396 1 967 353 134 20 30 chr3 50106182 50106282 -109493501 + (TAGA)n Simple_repeat Simple_repeat 4 102 0 1 967 355 171 65 30 chr3 50106362 50106531 -109493252 + (TAGA)n Simple_repeat Simple_repeat 4 178 0 1 967 239 299 26 13 chr3 50106986 50107064 -109492719 - ID4 SINE ID -1 82 4 1 967 293 395 88 30 chr3 50108888 50109193 -109490590 - ORR1D2 LTR MaLR -3 367 45 1 967 360 43 0 0 chr3 50111345 50111391 -109488392 + (CA)n Simple_repeat Simple_repeat 2 47 0 1 967 819 293 60 43 chr3 50113829 50114111 -109485672 + B4A SINE B4 6 292 0 1 967 188 67 33 0 chr3 50114119 50114149 -109485634 + (CATATA)n Simple_repeat Simple_repeat 6 36 0 1 967 1061 98 0 6 chr3 50114323 50114387 -109485396 + (GAA)n Simple_repeat Simple_repeat 2 65 0 1 967 1620 6 0 0 chr3 50114387 50114745 -109485038 + (GGAGAA)n Simple_repeat Simple_repeat 1 358 0 1 967 1061 98 0 6 chr3 50114745 50114843 -109484940 + (GAA)n Simple_repeat Simple_repeat 3 100 0 1 967 300 91 0 0 chr3 50115850 50115894 -109483889 + (GA)n Simple_repeat Simple_repeat 2 45 0 1 967 243 221 0 0 chr3 50116038 50116124 -109483659 + (CTCA)n Simple_repeat Simple_repeat 1 86 0 1 967 606 14 0 0 chr3 50116718 50116789 -109482994 + (TG)n Simple_repeat Simple_repeat 2 72 0 1 967 225 272 252 31 chr3 50116877 50117003 -109482780 - MIRb SINE MIR -88 180 26 1 967 22 56 0 0 chr3 50117011 50117047 -109482736 + AT_rich Low_complexity Low_complexity 1 36 0 1 967 649 291 29 0 chr3 50117064 50117239 -109482544 - B3A SINE B2 -16 182 3 1 967 435 342 54 7 chr3 50118257 50118404 -109481379 + B4A SINE B4 1 154 -138 1 967 468 287 0 24 chr3 50118630 50118755 -109481028 + RSINE1 SINE B4 44 165 0 1 967 351 0 0 0 chr3 50118920 50118959 -109480824 + (CA)n Simple_repeat Simple_repeat 1 39 0 1 967 469 301 256 77 chr3 50119073 50119537 -109480246 + MLT2B1 LTR ERVL 5 551 -5 1 967 263 248 27 29 chr3 50120552 50120631 -109479152 + MTE2a LTR MaLR 279 356 -23 1 967 1118 89 0 7 chr3 50121513 50121660 -109478123 + B1_Mus1 SINE Alu 2 147 -1 1 967 329 62 0 20 chr3 50121765 50121814 -109477969 + (TTA)n Simple_repeat Simple_repeat 1 48 0 1 967 422 143 13 0 chr3 50122535 50122612 -109477171 + (TA)n Simple_repeat Simple_repeat 2 79 0 1 967 3395 195 93 12 chr3 50123436 50124187 -109475596 + Lx5 LINE L1 6117 6928 -122 1 967 591 15 0 0 chr3 50124257 50124325 -109475458 + (TAGA)n Simple_repeat Simple_repeat 2 69 0 1 967 203 186 0 78 chr3 50124343 50124407 -109475376 + T-rich Low_complexity Low_complexity 2 60 0 1 967 1072 261 10 85 chr3 50125320 50125545 -109474238 + B4A SINE B4 9 225 -67 1 967 270 0 0 0 chr3 50125545 50125575 -109474208 + (TGG)n Simple_repeat Simple_repeat 2 31 0 1 967 1072 261 10 85 chr3 50125575 50125655 -109474128 + B4A SINE B4 226 291 -1 1 967 292 237 0 0 chr3 50125770 50125829 -109473954 - MER34 LTR ERV1 -481 61 3 1 967 276 335 80 46 chr3 50127096 50127271 -109472512 + MER34A1 LTR ERV1 395 575 -12 1 967 276 170 0 0 chr3 50127471 50127524 -109472259 + (TA)n Simple_repeat Simple_repeat 1 53 0 1 967 180 200 0 0 chr3 50128925 50128965 -109470818 + (TTAGGG)n Simple_repeat Simple_repeat 4 43 0 1 967 261 211 0 0 chr3 50129156 50129213 -109470570 + GA-rich Low_complexity Low_complexity 5 61 0 1 967 444 86 0 0 chr3 50132272 50132342 -109467441 + (TC)n Simple_repeat Simple_repeat 1 70 0 1 967 891 273 15 20 chr3 50132351 50132553 -109467230 - B3 SINE B2 -10 206 6 1 967 322 237 184 0 chr3 50133263 50133377 -109466406 - Lx8 LINE L1 -368 7105 6971 1 967 882 300 43 50 chr3 50133641 50134298 -109465485 + L1MA7 LINE L1 5639 6290 -1 1 967 867 107 110 32 chr3 50134868 50135022 -109464761 - URR1A DNA MER1_type -2 224 59 1 967 195 125 0 0 chr3 50136428 50136468 -109463315 + (A)n Simple_repeat Simple_repeat 1 40 0 1 967 1025 151 30 76 chr3 50138703 50138939 -109460844 + Lx7 LINE L1 7086 7310 -386 2 967 1635 147 153 64 chr3 50138953 50139359 -109460424 + RMER10A LTR ERVL 1 442 0 2 967 982 196 89 40 chr3 50139361 50139711 -109460072 + Lx7 LINE L1 7330 7696 0 2 967 814 176 7 0 chr3 50139849 50139985 -109459798 - B1_Mur4 SINE Alu -12 138 2 2 967 1753 179 47 57 chr3 50141120 50141506 -109458277 - ORR1C2 LTR MaLR -2 382 1 2 967 382 314 39 28 chr3 50143365 50143545 -109456238 + MER3 DNA MER1_type 9 190 -19 2 967 1299 23 68 23 chr3 50143550 50143727 -109456056 - L1Md_F3 LINE L1 -2 6582 6398 2 967 251 330 30 83 chr3 50144090 50144222 -109455561 + RLTR43A LTR ERVK 240 364 0 2 967 280 180 8 54 chr3 50144266 50144395 -109455388 + (TA)n Simple_repeat Simple_repeat 1 123 0 2 967 239 286 95 0 chr3 50145184 50145289 -109454494 + Charlie5 DNA MER1_type 2387 2501 -123 2 967 945 245 103 51 chr3 50145310 50145890 -109453893 - RLTR18 LTR ERVK -26 590 1 2 967 1384 244 84 34 chr3 50145890 50146272 -109453511 - MTD LTR MaLR -18 401 1 2 967 366 340 65 31 chr3 50146559 50146820 -109452963 + B4 SINE B4 5 274 -18 2 967 207 303 13 13 chr3 50146861 50146938 -109452845 + (CATATA)n Simple_repeat Simple_repeat 5 81 0 2 967 224 196 19 19 chr3 50146885 50146937 -109452846 + (CATA)n Simple_repeat Simple_repeat 1 52 0 2 967 390 21 0 0 chr3 50147028 50147075 -109452708 + (TC)n Simple_repeat Simple_repeat 1 47 0 2 967 2090 148 110 5 chr3 50147644 50148018 -109451765 - MTC LTR MaLR -8 413 1 2 967 820 272 176 45 chr3 50148283 50148726 -109451057 + MLT1D LTR MaLR 3 503 -2 2 967 996 203 94 0 chr3 50148835 50149027 -109450756 - B3 SINE B2 -6 210 1 2 967 507 305 79 22 chr3 50150192 50150370 -109449413 + B4A SINE B4 28 215 -77 2 967 272 91 0 22 chr3 50150395 50150412 -109449371 + (CA)n Simple_repeat Simple_repeat 1 17 0 2 967 432 0 0 0 chr3 50150412 50150460 -109449323 + (TC)n Simple_repeat Simple_repeat 1 48 0 2 967 272 91 0 22 chr3 50150460 50150487 -109449296 + (CA)n Simple_repeat Simple_repeat 2 28 0 2 967 372 104 0 0 chr3 50150488 50150555 -109449228 + (CAGAGA)n Simple_repeat Simple_repeat 6 72 0 2 967 619 311 30 25 chr3 50151646 50151847 -109447936 + MTEb LTR MaLR 3 204 -175 2 967 651 177 133 6 chr3 50151848 50152013 -109447770 - MERVL_2A-int LTR ERVL -171 5590 5405 2 967 9210 104 8 1 chr3 50152004 50153345 -109446438 + MERVL-int LTR ERVL 1998 3347 -2138 2 967 977 118 155 25 chr3 50153347 50153547 -109446236 + ORR1A3-int LTR MaLR 824 1049 -914 2 967 4685 34 95 94 chr3 50153547 50153957 -109445826 - L1_Mm LINE L1 -541 5342 4896 2 967 225 183 46 77 chr3 50153957 50154022 -109445761 + RMER20A LTR ERVK 186 248 -268 2 967 4685 34 95 94 chr3 50154022 50154323 -109445460 - L1_Mm LINE L1 -541 4895 4566 2 967 2017 132 23 11 chr3 50154323 50154656 -109445127 + ORR1A3-int LTR MaLR 1381 1690 -273 2 967 2149 100 17 0 chr3 50154676 50154965 -109444818 - MT2B LTR ERVL -307 294 1 2 967 620 301 12 6 chr3 50154965 50155129 -109444654 + MTEb LTR MaLR 215 379 0 2 967 2580 153 102 31 chr3 50156117 50156637 -109443146 - RLTR20B3 LTR ERVK 0 577 21 2 967 768 284 55 48 chr3 50158072 50158361 -109441422 + RMER15 LTR ERVL 251 541 -34 2 967 613 188 187 55 chr3 50160112 50160331 -109439452 - RMER20B LTR ERVK -251 376 129 2 967 362 200 127 25 chr3 50160492 50160610 -109439173 - Lx6 LINE L1 -48 7412 7283 2 967 4400 73 3 17 chr3 50160638 50161237 -109438546 - L1_Mus3 LINE L1 -6 6632 6042 2 967 3235 91 0 2 chr3 50161237 50161723 -109438060 + L1_Mm LINE L1 3906 4390 -1493 2 967 314 118 0 0 chr3 50161715 50161766 -109438017 - Lx7 LINE L1 -686 7010 6960 2 967 1102 239 32 14 chr3 50161768 50162048 -109437735 - Lx6 LINE L1 -605 6855 6571 2 967 224 261 25 0 chr3 50163614 50163778 -109436005 + GA-rich Low_complexity Low_complexity 1 168 0 2 967 1085 281 109 114 chr3 50164153 50164451 -109435332 - L1_Mur3 LINE L1 -749 5131 4817 2 967 852 59 0 0 chr3 50164451 50164570 -109435213 + (TCTA)n Simple_repeat Simple_repeat 4 122 0 2 967 1085 281 109 114 chr3 50164570 50165027 -109434756 - L1_Mur3 LINE L1 -1064 4816 4383 2 967 360 0 0 0 chr3 50165027 50165067 -109434716 + (TG)n Simple_repeat Simple_repeat 2 41 0 2 967 1085 281 109 114 chr3 50165067 50165200 -109434583 - L1_Mur3 LINE L1 -1498 4382 4214 2 967 4405 78 11 28 chr3 50165200 50165759 -109434024 - L1_Mus3 LINE L1 -5 6633 6085 2 967 2897 34 7 88 chr3 50165759 50166180 -109433603 - RLTR10 LTR ERVK -3 387 1 2 967 4405 78 11 28 chr3 50166180 50166267 -109433516 - L1_Mus3 LINE L1 -554 6084 5998 2 967 6037 50 0 7 chr3 50166269 50167012 -109432771 - L1Md_F2 LINE L1 -12 6570 5833 2 967 685 107 62 35 chr3 50167012 50167067 -109432716 - L1_Mus3 LINE L1 -640 5998 5936 2 967 798 287 52 16 chr3 50167105 50167470 -109432313 - L1_Mur3 LINE L1 -1717 4163 3786 2 967 1953 294 142 19 chr3 50167542 50168369 -109431414 + RCHARR1 DNA MER1_type 4 931 -43 2 967 189 0 0 0 chr3 50168403 50168424 -109431359 + (CA)n Simple_repeat Simple_repeat 2 22 0 2 967 453 36 0 0 chr3 50170086 50170141 -109429642 + (TTTTG)n Simple_repeat Simple_repeat 5 59 0 2 967 497 284 176 0 chr3 50172453 50172629 -109427154 - B3 SINE B2 -9 207 1 2 967 233 316 30 50 chr3 50172644 50172744 -109427039 - Arthur1A DNA Tip100 -65 112 15 2 967 280 300 0 0 chr3 50175524 50175584 -109424199 + ID4_ SINE ID 12 71 -12 2 967 561 15 0 0 chr3 50175585 50175651 -109424132 + (CA)n Simple_repeat Simple_repeat 2 67 0 2 967 21 71 0 0 chr3 50176498 50176540 -109423243 + AT_rich Low_complexity Low_complexity 1 42 0 2 967 270 56 0 0 chr3 50176635 50176671 -109423112 + (T)n Simple_repeat Simple_repeat 1 36 0 2 967 231 328 82 30 chr3 50176702 50176837 -109422946 + MIR3 SINE MIR 38 179 -29 2 967 585 276 98 67 chr3 50177255 50177601 -109422182 + ORR1E LTR MaLR 3 359 0 2 967 22 56 0 0 chr3 50178792 50178828 -109420955 + AT_rich Low_complexity Low_complexity 1 36 0 2 967 389 156 80 12 chr3 50179318 50179480 -109420303 + (TA)n Simple_repeat Simple_repeat 1 173 0 2 967 1368 122 91 0 chr3 50180638 50180859 -109418924 - Lx LINE L1 -7 6647 6407 2 967 228 67 0 0 chr3 50180999 50181029 -109418754 + (TTG)n Simple_repeat Simple_repeat 2 31 0 2 967 1122 179 18 5 chr3 50182272 50182491 -109417292 - URR1B DNA MER1_type -3 222 1 2 967 850 223 81 5 chr3 50183511 50183696 -109416087 - B4 SINE B4 -63 229 31 2 967 207 0 0 0 chr3 50185388 50185411 -109414372 + (A)n Simple_repeat Simple_repeat 1 23 0 2 967 180 0 0 0 chr3 50186631 50186651 -109413132 + (TTG)n Simple_repeat Simple_repeat 2 21 0 2 967 736 149 7 7 chr3 50187042 50187191 -109412592 + Lx2B LINE L1 6850 6998 -2 2 967 293 187 150 75 chr3 50187286 50187419 -109412364 - MER103 DNA DNA -9 157 15 2 967 1099 30 60 0 chr3 50188300 50188433 -109411350 - B1_Mm SINE Alu -6 141 1 2 967 365 258 159 30 chr3 50188479 50188611 -109411172 - MER5A DNA MER1_type -26 163 15 2 967 1944 40 24 0 chr3 50188668 50188917 -109410866 + L1Md_F2 LINE L1 5331 5585 -298 2 967 7731 56 10 4 chr3 50188918 50189898 -109409885 + L1Md_F2 LINE L1 5587 6572 -10 2 967 23 0 0 0 chr3 50191502 50191525 -109408258 + GC_rich Low_complexity Low_complexity 1 23 0 2 967 335 319 71 22 chr3 50191534 50191728 -109408055 - MIR SINE MIR -37 225 30 2 967 198 103 0 0 chr3 50191946 50191975 -109407808 + (TTG)n Simple_repeat Simple_repeat 2 30 0 2 967 235 284 36 27 chr3 50193155 50193295 -109406488 - MIRc SINE MIR -87 175 28 2 967 314 149 65 39 chr3 50196291 50196368 -109403415 + RMER15 LTR ERVL 22 100 -475 2 967 1227 225 134 0 chr3 50196408 50196706 -109403077 + RMER15 LTR ERVL 238 575 0 2 967 427 271 187 8 chr3 50199777 50199911 -109399872 - B4 SINE B4 -2 290 133 2 967 264 100 0 0 chr3 50199944 50199984 -109399799 + (TTGG)n Simple_repeat Simple_repeat 4 43 0 2 967 711 292 25 25 chr3 50200006 50200203 -109399580 + MTD LTR MaLR 4 200 -219 2 120 6974 162 70 21 chr3 50200204 50202420 -109397363 + Lx5 LINE L1 4731 7048 -2 2 968 936 210 72 6 chr3 50202468 50202677 -109397106 + MTD LTR MaLR 196 407 -12 2 968 270 383 28 9 chr3 50202668 50202776 -109397007 - B4 SINE B4 -181 111 2 2 968 750 241 46 16 chr3 50202874 50203068 -109396715 - B3 SINE B2 -15 201 2 2 968 2459 46 7 0 chr3 50203303 50203605 -109396178 - L1_Mus1 LINE L1 -1 6566 6263 2 968 602 49 49 0 chr3 50205091 50205193 -109394590 + (TAGA)n Simple_repeat Simple_repeat 4 110 0 2 968 633 61 20 10 chr3 50208153 50208253 -109391530 + (GA)n Simple_repeat Simple_repeat 2 102 0 2 968 383 294 99 38 chr3 50208350 50208481 -109391302 + B1_Mur2 SINE Alu 1 139 -10 2 968 888 10 0 0 chr3 50208488 50208589 -109391194 + (GAAA)n Simple_repeat Simple_repeat 3 103 0 2 968 392 276 66 9 chr3 50209367 50209473 -109390310 + PB1D10 SINE Alu 6 117 0 2 968 697 302 33 4 chr3 50209791 50209989 -109389794 - B3A SINE B2 -11 205 3 2 968 256 357 38 38 chr3 50211007 50211138 -109388645 + MIRc SINE MIR 11 141 -127 2 968 207 252 16 8 chr3 50211257 50211385 -109388398 + (TA)n Simple_repeat Simple_repeat 1 129 0 2 968 186 331 51 77 chr3 50211980 50212176 -109387607 - MIRb SINE MIR -32 236 46 2 968 349 288 66 25 chr3 50213007 50213128 -109386655 + B1F1 SINE Alu 8 133 -16 2 968 198 0 0 0 chr3 50214088 50214110 -109385673 + (A)n Simple_repeat Simple_repeat 1 22 0 2 968 378 0 0 0 chr3 50214532 50214574 -109385209 + (CA)n Simple_repeat Simple_repeat 2 43 0 2 968 225 65 0 0 chr3 50214766 50214797 -109384986 + (GCTG)n Simple_repeat Simple_repeat 2 32 0 2 968 267 31 0 0 chr3 50215685 50215717 -109384066 + (TA)n Simple_repeat Simple_repeat 2 33 0 2 968 363 336 0 0 chr3 50215732 50215836 -109383947 + RMER12 LTR ERVK 771 874 -448 2 968 943 264 100 0 chr3 50215902 50216163 -109383620 + B4A SINE B4 6 292 0 2 968 186 103 0 0 chr3 50216210 50216239 -109383544 + (A)n Simple_repeat Simple_repeat 1 29 0 2 968 3536 225 101 9 chr3 50217288 50218213 -109381570 + Lx6 LINE L1 6269 7278 -182 2 968 312 137 0 0 chr3 50218220 50218271 -109381512 + (TGAG)n Simple_repeat Simple_repeat 1 51 0 2 968 224 30 30 0 chr3 50218431 50218464 -109381319 + (GTTTG)n Simple_repeat Simple_repeat 2 35 0 3 968 528 111 0 0 chr3 50218473 50218563 -109381220 + (T)n Simple_repeat Simple_repeat 1 90 0 3 968 22 35 0 0 chr3 50218769 50218798 -109380985 + AT_rich Low_complexity Low_complexity 1 29 0 3 968 414 121 0 0 chr3 50218923 50218989 -109380794 + (CA)n Simple_repeat Simple_repeat 1 66 0 3 968 482 196 17 40 chr3 50219726 50219901 -109379882 + CT-rich Low_complexity Low_complexity 2 172 0 3 968 6787 69 76 3 chr3 50220002 50221048 -109378735 + L1_Mus3 LINE L1 5513 6634 -4 3 968 273 262 38 70 chr3 50222657 50222842 -109376941 + L1MA7 LINE L1 6103 6281 -10 3 968 719 271 55 91 chr3 50229364 50229533 -109370250 + B3A SINE B2 2 164 -31 3 968 183 42 0 0 chr3 50229533 50229557 -109370226 + (CA)n Simple_repeat Simple_repeat 2 25 0 3 968 478 271 55 91 chr3 50229557 50229586 -109370197 + B2_Mm2 SINE B2 165 193 -2 3 968 278 322 131 14 chr3 50231760 50231905 -109367878 + MER5A1 DNA MER1_type 1 162 -4 3 968 210 71 0 0 chr3 50232401 50232429 -109367354 + (TGAA)n Simple_repeat Simple_repeat 1 28 0 3 968 1037 127 27 27 chr3 50233094 50233280 -109366503 + B2_Mm2 SINE B2 1 186 -9 3 968 484 280 101 32 chr3 50235753 50235981 -109363802 - B4A SINE B4 0 292 1 3 968 24 0 0 0 chr3 50236397 50236421 -109363362 + AT_rich Low_complexity Low_complexity 1 24 0 3 968 185 0 40 0 chr3 50239145 50239170 -109360613 + (CAAAAA)n Simple_repeat Simple_repeat 6 31 0 3 968 438 165 0 0 chr3 50241624 50241703 -109358080 + (TA)n Simple_repeat Simple_repeat 1 79 0 3 968 939 178 103 0 chr3 50243050 50243235 -109356548 + B3 SINE B2 3 206 -10 3 968 201 152 0 0 chr3 50243966 50243999 -109355784 + (CAAT)n Simple_repeat Simple_repeat 2 34 0 3 968 258 284 225 5 chr3 50244628 50244819 -109354964 - Tigger5 DNA MER2_type 0 2406 2174 3 968 207 225 0 0 chr3 50246198 50246238 -109353545 + A-rich Low_complexity Low_complexity 1 40 0 3 968 300 83 0 0 chr3 50246571 50246619 -109353164 + (T)n Simple_repeat Simple_repeat 1 48 0 3 968 300 53 0 0 chr3 50247231 50247269 -109352514 + (CAAAA)n Simple_repeat Simple_repeat 2 39 0 3 968 189 0 0 0 chr3 50247650 50247671 -109352112 + (T)n Simple_repeat Simple_repeat 1 21 0 3 968 26 64 0 0 chr3 50248727 50248774 -109351009 + AT_rich Low_complexity Low_complexity 1 47 0 3 968 198 0 0 0 chr3 50248818 50248840 -109350943 + (TAAAAA)n Simple_repeat Simple_repeat 3 24 0 3 968 241 232 0 18 chr3 50249028 50249085 -109350698 + G-rich Low_complexity Low_complexity 5 60 0 3 968 257 333 13 64 chr3 50250800 50250957 -109348826 - MER58C DNA MER1_type 0 215 67 3 968 330 293 120 68 chr3 50251859 50252167 -109347616 + L1MEe LINE L1 492 815 -4039 3 968 283 286 0 25 chr3 50252170 50252306 -109347477 + GA-rich Low_complexity Low_complexity 1 132 0 3 968 654 13 0 0 chr3 50252769 50252844 -109346939 + (TCC)n Simple_repeat Simple_repeat 2 76 0 3 968 555 56 0 0 chr3 50253102 50253173 -109346610 + (TCTA)n Simple_repeat Simple_repeat 4 74 0 3 968 618 307 30 13 chr3 50254170 50254404 -109345379 + RMER15 LTR ERVL 324 561 -14 3 968 432 0 0 0 chr3 50255273 50255321 -109344462 + (CA)n Simple_repeat Simple_repeat 1 48 0 3 968 453 260 62 68 chr3 50256309 50256455 -109343328 + RSINE1 SINE B4 6 153 -12 3 968 1157 0 46 11 chr3 50256455 50256715 -109343068 + (TC)n Simple_repeat Simple_repeat 1 269 0 3 968 453 260 62 68 chr3 50256715 50256728 -109343055 + RSINE1 SINE B4 154 164 -1 3 968 230 129 34 45 chr3 50256731 50256820 -109342963 + (CA)n Simple_repeat Simple_repeat 2 89 0 3 968 875 309 82 39 chr3 50257417 50257747 -109342036 - MTEa LTR MaLR -22 357 14 3 968 216 330 40 10 chr3 50257787 50257888 -109341895 - BC1_Mm scRNA scRNA -48 104 1 3 968 4649 46 34 0 chr3 50258549 50259378 -109340405 - L1Md_F2 LINE L1 -465 6117 5267 3 968 3811 43 0 15 chr3 50259378 50259853 -109339930 + L1Md_F2 LINE L1 6098 6565 -17 3 968 197 33 0 32 chr3 50260281 50260312 -109339471 + (TTTG)n Simple_repeat Simple_repeat 4 33 0 3 968 3766 80 17 0 chr3 50261869 50262407 -109337376 + Lx2 LINE L1 6097 6643 -354 3 968 1503 98 9 0 chr3 50262407 50262622 -109337161 + Lx2 LINE L1 6775 6991 -6 3 968 507 56 0 0 chr3 50263071 50263142 -109336641 + (CA)n Simple_repeat Simple_repeat 1 71 0 3 968 204 40 0 0 chr3 50263177 50263202 -109336581 + (ATTG)n Simple_repeat Simple_repeat 2 26 0 3 968 252 200 217 36 chr3 50263275 50263358 -109336425 - MLT1D LTR MaLR -4 404 307 3 968 317 317 78 10 chr3 50264431 50264533 -109335250 + ID_B1 SINE B4 113 221 -3 3 968 217 336 134 59 chr3 50264564 50264647 -109335136 + B4A SINE B4 2 87 -205 3 968 1060 84 6 6 chr3 50264647 50264827 -109334956 + (GA)n Simple_repeat Simple_repeat 1 180 0 3 968 217 336 134 59 chr3 50264827 50264996 -109334787 + B4A SINE B4 88 273 -19 3 968 545 151 36 6 chr3 50265035 50265202 -109334581 + (CA)n Simple_repeat Simple_repeat 1 172 0 3 968 290 181 38 0 chr3 50265216 50265321 -109334462 + (CA)n Simple_repeat Simple_repeat 1 109 0 3 968 329 337 6 12 chr3 50265337 50265505 -109334278 + (CA)n Simple_repeat Simple_repeat 1 167 0 3 968 445 204 23 6 chr3 50265520 50265693 -109334090 + (CA)n Simple_repeat Simple_repeat 1 176 0 3 968 551 312 60 87 chr3 50266620 50266989 -109332794 - ORR1E LTR MaLR 0 359 1 3 968 396 303 7 60 chr3 50267025 50267176 -109332607 + MLT1A0 LTR MaLR 213 355 -10 3 968 364 300 37 37 chr3 50268155 50268289 -109331494 - MLT1D LTR MaLR -284 221 88 3 968 792 332 50 31 chr3 50268289 50268620 -109331163 + Tigger5 DNA MER2_type 1 347 -19 3 968 255 359 0 57 chr3 50268575 50268699 -109331084 - MLT1D LTR MaLR -388 117 1 3 968 11187 8 0 1 chr3 50268760 50270096 -109329687 - L1Md_A LINE L1 -484 5399 4066 3 968 369 42 0 0 chr3 50270090 50270138 -109329645 + L1Md_A LINE L1 5410 5457 -426 3 968 1895 62 7 11 chr3 50270134 50270409 -109329374 + L1Md_A LINE L1 512 785 -5939 3 968 25067 9 0 0 chr3 50270408 50273397 -109326386 + L1Md_A LINE L1 2598 5586 -297 3 968 8656 23 0 0 chr3 50273397 50274393 -109325390 + L1Md_A LINE L1 5587 6582 0 3 968 1146 8 0 0 chr3 50274393 50274527 -109325256 + L1Md_A LINE L1 5452 5585 -298 3 968 8847 14 0 0 chr3 50274528 50275524 -109324259 + L1Md_A LINE L1 5587 6582 0 3 968 294 299 34 17 chr3 50275598 50275717 -109324066 + MIRb SINE MIR 84 204 -64 3 968 567 376 102 30 chr3 50276003 50276376 -109323407 + MLT-int LTR MaLR 1258 1664 -71 3 968 3414 33 2 0 chr3 50276376 50276771 -109323012 - MTA_Mm LTR MaLR 0 396 1 3 968 9192 32 4 1 chr3 50276772 50277866 -109321917 - MTA_Mm-int LTR MaLR -1 1097 1 3 968 3472 25 2 0 chr3 50277866 50278261 -109321522 - MTA_Mm LTR MaLR 0 396 1 3 968 208 305 27 54 chr3 50279258 50279369 -109320414 + L2a LINE L2 3293 3400 -26 3 968 21 0 0 0 chr3 50279520 50279541 -109320242 + AT_rich Low_complexity Low_complexity 1 21 0 3 968 185 254 88 15 chr3 50279712 50279780 -109320003 - MIRm SINE MIR -101 175 103 3 968 1171 68 0 7 chr3 50280834 50280982 -109318801 + B1_Mus1 SINE Alu 2 148 0 3 968 216 0 0 0 chr3 50280985 50281009 -109318774 + (A)n Simple_repeat Simple_repeat 1 24 0 3 968 237 214 27 41 chr3 50281117 50281190 -109318593 - MTE2b LTR MaLR -30 349 278 3 968 236 276 48 72 chr3 50282011 50282136 -109317647 + RMER15 LTR ERVL 8 129 -446 3 968 539 338 69 40 chr3 50282146 50282423 -109317360 + RMER15 LTR ERVL 291 575 0 3 968 204 322 18 39 chr3 50283271 50283381 -109316402 + MIR SINE MIR 44 148 -120 3 968 7108 134 16 60 chr3 50284273 50286647 -109313136 + L1_Mus1 LINE L1 4319 6566 -1 3 968 207 0 0 0 chr3 50287066 50287089 -109312694 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 3 968 29 0 0 0 chr3 50287681 50287710 -109312073 + AT_rich Low_complexity Low_complexity 1 29 0 3 968 2333 149 18 10 chr3 50288468 50288855 -109310928 + ORR1B1 LTR MaLR 5 394 0 3 968 248 361 186 25 chr3 50290298 50290616 -109309167 + Arthur1 DNA Tip100 221 589 -3358 3 968 754 263 47 47 chr3 50290609 50291010 -109308773 - MT2A LTR ERVL -11 590 89 3 968 287 25 25 0 chr3 50291010 50291050 -109308733 + (CAA)n Simple_repeat Simple_repeat 2 42 0 3 968 288 300 0 0 chr3 50291050 50291073 -109308710 - MT2A LTR ERVL -445 88 66 3 968 239 298 119 0 chr3 50291064 50291148 -109308635 - MER53 DNA hAT -75 118 25 3 968 3954 84 11 14 chr3 50291932 50292497 -109307286 + L1_Mus3 LINE L1 6074 6636 -2 3 968 182 37 0 36 chr3 50292505 50292533 -109307250 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3 968 275 287 34 11 chr3 50293013 50293101 -109306682 + MLT1A1 LTR MaLR 19 108 -300 3 968 579 314 102 18 chr3 50293338 50293623 -109306160 + MLT1A LTR MaLR 53 361 -13 3 968 26 50 0 0 chr3 50293710 50293750 -109306033 + AT_rich Low_complexity Low_complexity 1 40 0 3 968 946 54 15 0 chr3 50294070 50294200 -109305583 + L1_Mus2 LINE L1 6433 6564 -2 3 968 1251 20 0 0 chr3 50294215 50294361 -109305422 + (GAGAA)n Simple_repeat Simple_repeat 4 149 0 3 968 421 243 73 79 chr3 50294495 50294660 -109305123 + RSINE1 SINE B4 2 165 0 3 968 2682 169 52 2 chr3 50294820 50295323 -109304460 - RLTR11A LTR ERVK 0 528 1 3 968 791 268 88 127 chr3 50295609 50296001 -109303782 - MT2B LTR ERVL 0 601 171 3 968 1412 273 18 23 chr3 50296005 50296402 -109303381 + Lx6 LINE L1 7066 7460 0 3 968 3520 176 12 16 chr3 50296413 50297084 -109302699 - MERVL_2A-int LTR ERVL -252 5509 4842 3 968 400 300 38 45 chr3 50297232 50297389 -109302394 - RSINE1 SINE B4 -8 157 2 3 968 23 78 0 0 chr3 50298187 50298238 -109301545 + AT_rich Low_complexity Low_complexity 1 51 0 3 968 2157 178 127 89 chr3 50298779 50299440 -109300343 - RMER6C LTR ERVK 0 690 5 3 968 31 0 0 0 chr3 50300514 50300545 -109299238 + AT_rich Low_complexity Low_complexity 1 31 0 3 968 1095 212 15 0 chr3 50301120 50301323 -109298460 - B3 SINE B2 -10 206 1 3 968 234 220 0 0 chr3 50301607 50301666 -109298117 + (CA)n Simple_repeat Simple_repeat 2 60 0 3 968 3159 56 2 8 chr3 50302041 50302439 -109297344 + MTA_Mm LTR MaLR 1 396 0 3 968 230 324 66 88 chr3 50302664 50302891 -109296892 + LTR85c LTR Gypsy? 585 806 -17 3 968 22 0 0 0 chr3 50303063 50303085 -109296698 + AT_rich Low_complexity Low_complexity 1 22 0 3 968 967 301 21 18 chr3 50303175 50303510 -109296273 + Lx8 LINE L1 6551 6886 -587 3 968 656 343 54 45 chr3 50303554 50303847 -109295936 + Lx8 LINE L1 6806 7104 -369 3 968 2946 70 31 3 chr3 50303847 50304232 -109295551 + MTA_Mm LTR MaLR 1 396 0 3 968 656 343 54 45 chr3 50304232 50304472 -109295311 + Lx8 LINE L1 7105 7344 -129 3 968 2445 193 51 11 chr3 50304885 50305410 -109294373 - Lx5 LINE L1 -522 6528 5983 3 968 2354 214 15 4 chr3 50305407 50305880 -109293903 + Lx5 LINE L1 6523 7000 -50 3 968 183 42 0 0 chr3 50305913 50305937 -109293846 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 3 968 216 267 33 33 chr3 50306232 50306352 -109293431 + (TATG)n Simple_repeat Simple_repeat 1 120 0 3 968 942 273 105 42 chr3 50306718 50307364 -109292419 + L1MC3 LINE L1 7010 7696 -89 4 968 206 383 0 0 chr3 50309242 50309349 -109290434 - MIRb SINE MIR -69 199 93 4 968 2327 72 15 9 chr3 50309730 50310055 -109289728 - ORR1A2 LTR MaLR 0 327 1 4 968 265 282 107 7 chr3 50310604 50310754 -109289029 - Lx8 LINE L1 -2 7471 7307 4 968 2152 269 88 11 chr3 50310753 50311504 -109288279 - Lx8 LINE L1 -320 7153 6345 4 968 2072 221 107 22 chr3 50311987 50312635 -109287148 + Lx9 LINE L1 6942 7644 0 4 968 612 263 51 34 chr3 50313445 50313618 -109286165 - B3 SINE B2 -7 209 34 4 968 1601 162 63 31 chr3 50313618 50313937 -109285846 + ORR1A4 LTR MaLR 1 329 0 4 968 21 36 0 0 chr3 50314416 50314444 -109285339 + AT_rich Low_complexity Low_complexity 1 28 0 4 968 665 297 72 10 chr3 50314628 50314822 -109284961 + B4 SINE B4 49 254 -38 4 968 888 61 0 0 chr3 50314884 50314999 -109284784 + (GA)n Simple_repeat Simple_repeat 2 116 0 4 968 372 59 0 0 chr3 50315523 50315574 -109284209 + (CA)n Simple_repeat Simple_repeat 1 51 0 4 968 229 268 92 11 chr3 50315876 50315963 -109283820 + ORR1A4-int LTR MaLR 105 198 -1311 4 968 657 0 0 0 chr3 50316545 50316618 -109283165 + (TC)n Simple_repeat Simple_repeat 1 73 0 4 968 261 342 98 31 chr3 50316761 50316924 -109282859 + L2c LINE L2 3165 3338 -49 4 968 228 238 122 67 chr3 50316920 50317010 -109282773 - MIRc SINE MIR -148 120 26 4 968 392 342 38 36 chr3 50317556 50317748 -109282035 + MIRb SINE MIR 6 192 -76 4 968 230 183 98 16 chr3 50318480 50318541 -109281242 - ID4_ SINE ID -14 69 4 4 968 466 344 52 22 chr3 50318552 50318784 -109280999 - MLT1F2 LTR MaLR 0 560 322 4 968 230 254 104 0 chr3 50318788 50318855 -109280928 - MLT1F2 LTR MaLR -473 87 14 4 968 687 156 0 0 chr3 50318912 50319091 -109280692 + (TA)n Simple_repeat Simple_repeat 2 180 0 4 968 241 294 15 0 chr3 50319358 50319426 -109280357 + ID4 SINE ID 1 69 -14 4 968 211 247 32 0 chr3 50319897 50319990 -109279793 + (TATG)n Simple_repeat Simple_repeat 4 99 0 4 968 6019 87 25 0 chr3 50320330 50321212 -109278571 - L1_Mus3 LINE L1 -6 6632 5729 4 968 333 248 41 34 chr3 50321212 50321358 -109278425 + L1Md_F LINE L1 570 716 -5803 4 968 756 292 55 40 chr3 50321853 50322178 -109277605 - MLT1B LTR MaLR -1 389 60 4 968 693 259 99 20 chr3 50322251 50322452 -109277331 - ID_B1 SINE B4 -7 217 1 4 968 359 296 213 22 chr3 50322469 50322652 -109277131 - MLT1A LTR MaLR -21 353 136 4 968 558 0 0 0 chr3 50323460 50323522 -109276261 + (TC)n Simple_repeat Simple_repeat 1 62 0 4 968 198 0 0 0 chr3 50323522 50323544 -109276239 + (TG)n Simple_repeat Simple_repeat 2 23 0 4 968 602 273 29 0 chr3 50323554 50323693 -109276090 - RSINE1 SINE B4 -20 145 3 4 968 330 280 66 29 chr3 50325088 50325224 -109274559 + MIR SINE MIR 18 158 -104 4 968 401 36 18 0 chr3 50325304 50325359 -109274424 + (TG)n Simple_repeat Simple_repeat 2 57 0 4 968 308 292 0 30 chr3 50325371 50325470 -109274313 + Tigger6b DNA MER2_type 29 124 -1473 4 968 490 157 35 62 chr3 50326334 50326445 -109273338 + PB1D9 SINE Alu 5 114 -6 4 968 194 0 0 37 chr3 50326445 50326472 -109273311 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 4 968 264 233 0 0 chr3 50326529 50326589 -109273194 - Tigger6a DNA MER2_type -354 729 670 4 968 258 325 27 130 chr3 50327591 50327775 -109272008 + MER5A DNA MER1_type 23 187 -2 4 968 270 323 216 39 chr3 50328485 50328778 -109271005 + MLT1A1 LTR MaLR 19 363 -45 4 968 302 212 9 69 chr3 50329010 50329228 -109270555 + RMER17D LTR ERVK 236 440 -449 4 968 384 280 8 63 chr3 50329228 50329354 -109270429 + RMER15 LTR ERVL 349 467 -108 4 968 1267 142 23 0 chr3 50329367 50329585 -109270198 - Lx2 LINE L1 0 6997 6775 4 968 2097 98 0 0 chr3 50329585 50329880 -109269903 - Lx2 LINE L1 -354 6643 6349 4 1 7740 52 10 4 chr3 50331125 50332188 -109267595 + L1_Mus4 LINE L1 5587 6636 0 4 969 378 0 0 0 chr3 50332217 50332259 -109267524 + (CA)n Simple_repeat Simple_repeat 2 43 0 4 969 383 346 0 38 chr3 50333575 50333707 -109266076 - ID_B1 SINE B4 -5 219 93 4 969 249 159 0 0 chr3 50336179 50336223 -109263560 + (TTG)n Simple_repeat Simple_repeat 2 45 0 4 969 213 65 0 0 chr3 50336464 50336495 -109263288 + (TAAAAA)n Simple_repeat Simple_repeat 3 33 0 4 969 363 309 123 32 chr3 50336495 50336682 -109263101 + L1MEc LINE L1 53 256 -6144 4 969 243 296 0 53 chr3 50336711 50336843 -109262940 + L1MEc LINE L1 2952 3076 -3243 4 969 405 0 0 0 chr3 50337683 50337728 -109262055 + (TCTG)n Simple_repeat Simple_repeat 2 46 0 4 969 231 135 27 0 chr3 50339116 50339153 -109260630 - tRNA-Gly-GGA tRNA tRNA -37 38 1 4 969 3545 72 100 19 chr3 50339243 50339765 -109260018 + LTRIS2 LTR ERV1 1 564 0 4 969 864 181 0 0 chr3 50339848 50340014 -109259769 + CT-rich Low_complexity Low_complexity 2 167 0 4 969 710 295 30 24 chr3 50340064 50340397 -109259386 - Lx8 LINE L1 -234 7239 6905 4 969 1388 201 116 48 chr3 50340548 50340903 -109258880 + RMER16 LTR ERVK 72 450 -83 4 969 29 28 0 0 chr3 50340903 50340939 -109258844 + AT_rich Low_complexity Low_complexity 1 36 0 4 969 795 11 0 0 chr3 50341284 50341376 -109258407 + (TTC)n Simple_repeat Simple_repeat 1 92 0 4 969 352 261 14 0 chr3 50341527 50341610 -109258173 - ID4_ SINE ID -56 96 13 4 969 219 351 13 0 chr3 50341792 50341869 -109257914 - MIRc SINE MIR -117 151 74 4 969 284 57 0 0 chr3 50342406 50342441 -109257342 - U2 snRNA snRNA -153 35 1 4 969 230 305 33 17 chr3 50342633 50342753 -109257030 - L1MA8 LINE L1 -29 6271 6150 4 969 414 295 95 25 chr3 50342958 50343243 -109256540 - L1MA8 LINE L1 -389 5902 5598 4 969 411 340 104 93 chr3 50343272 50343626 -109256157 - ORR1E LTR MaLR 0 359 2 4 969 736 301 104 43 chr3 50343648 50344551 -109255232 - L1MA8 LINE L1 -793 5507 4547 4 969 556 270 52 13 chr3 50344567 50344721 -109255062 + RSINE1 SINE B4 2 161 -4 4 969 210 71 0 0 chr3 50344805 50344833 -109254950 + (T)n Simple_repeat Simple_repeat 1 28 0 4 969 39203 7 0 0 chr3 50344843 50351022 -109248761 - L1Md_A LINE L1 0 6582 404 4 969 231 231 0 0 chr3 50351026 50351078 -109248705 + T-rich Low_complexity Low_complexity 1 52 0 4 969 397 246 124 4 chr3 50351087 50351312 -109248471 - L1MA8 LINE L1 -1638 4505 4254 4 969 641 36 12 0 chr3 50353380 50353464 -109246319 + (TC)n Simple_repeat Simple_repeat 1 85 0 4 969 723 136 7 13 chr3 50355766 50355915 -109243868 + CT-rich Low_complexity Low_complexity 2 149 0 4 969 237 33 0 0 chr3 50355916 50355946 -109243837 + (TG)n Simple_repeat Simple_repeat 1 30 0 4 969 495 301 54 121 chr3 50357416 50357714 -109242069 + ORR1E LTR MaLR 77 354 -5 4 969 551 304 116 52 chr3 50358154 50358630 -109241153 + L1MA4A LINE L1 5425 5930 -373 4 969 247 302 116 0 chr3 50359352 50359438 -109240345 + PB1D10 SINE Alu 20 115 -2 4 969 329 300 8 24 chr3 50359439 50359562 -109240221 + GA-rich Low_complexity Low_complexity 2 122 0 4 969 1272 228 80 22 chr3 50360011 50360374 -109239409 - ORR1C2 LTR MaLR 0 384 1 4 969 287 191 15 0 chr3 50360538 50360606 -109239177 + GA-rich Low_complexity Low_complexity 1 69 0 4 969 36502 40 3 14 chr3 50360887 50366920 -109232863 - L1Md_F2 LINE L1 -3 6579 622 4 969 903 19 0 0 chr3 50367013 50367118 -109232665 + (TTTC)n Simple_repeat Simple_repeat 2 106 0 4 969 724 345 31 8 chr3 50368219 50368476 -109231307 + B4 SINE B4 27 289 -3 4 969 849 277 136 49 chr3 50369097 50369545 -109230238 + MLT1D LTR MaLR 1 487 -18 4 969 183 111 0 0 chr3 50371545 50371572 -109228211 - L3 LINE CR1 -98 4391 4365 4 969 288 340 54 34 chr3 50372378 50372582 -109227201 + Lx8 LINE L1 7059 7266 -207 4 969 400 298 8 15 chr3 50372582 50372715 -109227068 + RMER15 LTR ERVL 403 534 -41 4 969 807 316 41 11 chr3 50373759 50374025 -109225758 + B4A SINE B4 1 274 -18 4 969 333 0 0 0 chr3 50374048 50374085 -109225698 + (CA)n Simple_repeat Simple_repeat 2 38 0 4 969 2807 25 25 94 chr3 50375503 50375895 -109223888 - RLTR10B2 LTR ERVK 0 365 1 4 969 230 213 21 0 chr3 50375906 50375953 -109223830 - MLT1D LTR MaLR -4 386 339 4 969 350 280 38 101 chr3 50375959 50376118 -109223665 - MLT1D LTR MaLR -120 385 237 4 969 2610 164 11 44 chr3 50376495 50376858 -109222925 + L1VL4 LINE L1 296 821 -5537 4 969 1239 114 5 20 chr3 50376858 50377054 -109222729 + B2_Mm2 SINE B2 3 195 0 4 969 4783 118 18 8 chr3 50377054 50377983 -109221800 + L1VL4 LINE L1 822 1752 -1863 4 969 699 62 0 0 chr3 50378179 50378276 -109221507 + (TAGA)n Simple_repeat Simple_repeat 2 98 0 4 969 454 296 95 20 chr3 50378503 50378651 -109221132 + B3A SINE B2 9 167 -31 4 969 432 0 0 0 chr3 50378652 50378700 -109221083 + (CA)n Simple_repeat Simple_repeat 1 48 0 4 969 301 128 64 0 chr3 50378805 50378883 -109220900 - Lx4A LINE L1 0 7058 6976 4 969 246 330 17 26 chr3 50379098 50379213 -109220570 + MER46C DNA MER2_type 224 337 -1 4 969 601 284 69 124 chr3 50379610 50379900 -109219883 - B4A SINE B4 -18 274 1 4 969 6504 70 49 0 chr3 50379945 50380857 -109218926 - L1_Mus4 LINE L1 -5 6631 5675 4 969 5221 99 3 0 chr3 50381069 50381798 -109217985 + L1_Mus1 LINE L1 5836 6566 -1 4 969 251 320 134 39 chr3 50381816 50381943 -109217840 - ORR1E LTR MaLR -214 145 7 4 969 344 332 98 67 chr3 50382799 50383115 -109216668 + HAL1 LINE L1 2021 2346 -161 4 969 27 62 0 0 chr3 50383337 50383385 -109216398 + AT_rich Low_complexity Low_complexity 1 48 0 4 969 414 307 45 72 chr3 50384256 50384477 -109215306 + MLT2C1 LTR ERVL 18 232 -165 4 969 247 266 53 0 chr3 50384668 50384781 -109215002 + (TCTA)n Simple_repeat Simple_repeat 3 121 0 4 969 633 27 0 0 chr3 50384978 50385053 -109214730 + (TG)n Simple_repeat Simple_repeat 1 75 0 4 969 636 258 0 0 chr3 50385054 50385174 -109214609 - RSINE1 SINE B4 -41 124 5 4 969 287 78 0 19 chr3 50385787 50385839 -109213944 + (TTTG)n Simple_repeat Simple_repeat 2 52 0 4 969 180 339 152 22 chr3 50385883 50386061 -109213722 + L2a LINE L2 3199 3399 -27 5 969 990 26 0 0 chr3 50388158 50388275 -109211508 + (TAAA)n Simple_repeat Simple_repeat 4 120 0 5 969 7046 130 35 12 chr3 50390443 50391581 -109208202 - Lx3B LINE L1 -3 6970 5807 5 969 701 290 21 31 chr3 50393087 50393279 -109206504 + ID_B1 SINE B4 19 208 -16 5 969 524 271 122 27 chr3 50393605 50393781 -109206002 + B3A SINE B2 1 184 -14 5 969 223 385 14 36 chr3 50393930 50394070 -109205713 - L3 LINE CR1 -182 4307 4171 5 969 21 0 0 0 chr3 50394493 50394514 -109205269 + AT_rich Low_complexity Low_complexity 1 21 0 5 969 801 58 0 0 chr3 50396580 50396683 -109203100 + (TC)n Simple_repeat Simple_repeat 2 104 0 5 969 21 0 0 0 chr3 50397779 50397800 -109201983 + AT_rich Low_complexity Low_complexity 1 21 0 5 969 908 291 67 14 chr3 50398341 50398669 -109201114 - ORR1E LTR MaLR -7 372 8 5 969 777 285 5 18 chr3 50398859 50399077 -109200706 - B3 SINE B2 0 216 2 5 969 4503 142 142 10 chr3 50399214 50400051 -109199732 + RLTR25A LTR ERVK 1 948 -155 5 969 673 177 88 135 chr3 50400337 50400552 -109199231 + RLTR25B LTR ERVK 742 946 -82 5 969 695 211 28 14 chr3 50400544 50400688 -109199095 - MTEa LTR MaLR -23 356 211 5 969 266 427 58 12 chr3 50400672 50400845 -109198938 - MER115 DNA Tip100 -150 543 363 5 969 642 202 196 5 chr3 50401074 50401263 -109198520 - URR1B DNA MER1_type 0 225 1 5 969 1193 231 78 28 chr3 50401339 50401508 -109198275 + MTEa LTR MaLR 1 188 -191 5 969 264 30 0 0 chr3 50401508 50401541 -109198242 + (CA)n Simple_repeat Simple_repeat 2 34 0 5 969 279 0 0 0 chr3 50401541 50401571 -109198212 + (GA)n Simple_repeat Simple_repeat 2 32 0 5 969 1193 231 78 28 chr3 50401571 50401761 -109198022 + MTEa LTR MaLR 189 378 -1 5 969 411 268 127 54 chr3 50402826 50402992 -109196791 - MLT1F1 LTR MaLR -85 484 307 5 969 345 311 105 29 chr3 50403047 50403219 -109196564 - MLT1F1 LTR MaLR -363 185 1 5 969 419 319 50 0 chr3 50403369 50403510 -109196273 + MLT1D LTR MaLR 14 161 -344 5 969 1374 39 0 0 chr3 50403573 50403751 -109196032 - L1_Mus1 LINE L1 -499 6068 5891 5 969 4001 65 2 2 chr3 50403752 50404317 -109195466 + L1_Mus1 LINE L1 6059 6567 0 5 969 533 268 113 49 chr3 50404327 50404531 -109195252 + MLT1D LTR MaLR 246 462 -43 5 969 52 17 0 0 chr3 50404547 50404606 -109195177 + AT_rich Low_complexity Low_complexity 1 59 0 5 969 31 0 0 0 chr3 50404821 50404852 -109194931 + AT_rich Low_complexity Low_complexity 1 31 0 5 969 684 36 0 0 chr3 50405888 50405971 -109193812 + (TGGA)n Simple_repeat Simple_repeat 4 86 0 5 969 2549 96 16 11 chr3 50408280 50408659 -109191124 - L1Md_F2 LINE L1 -13 6569 6189 5 969 531 45 0 0 chr3 50408882 50408948 -109190835 + (TAAA)n Simple_repeat Simple_repeat 4 69 0 5 969 255 326 97 54 chr3 50409048 50409233 -109190550 - L2b LINE L2 -5 3370 3178 5 969 294 275 13 55 chr3 50409287 50409413 -109190370 + L1MA4 LINE L1 5848 5972 -319 5 969 416 298 90 18 chr3 50409654 50409876 -109189907 + MLT1A0 LTR MaLR 1 238 -127 5 969 1559 182 29 0 chr3 50410117 50410392 -109189391 + Lx4A LINE L1 6769 7051 -7 5 969 21 0 0 0 chr3 50410405 50410426 -109189357 + AT_rich Low_complexity Low_complexity 1 21 0 5 969 248 200 17 0 chr3 50411987 50412047 -109187736 + GA-rich Low_complexity Low_complexity 2 62 0 5 969 207 0 0 0 chr3 50412403 50412426 -109187357 + (GTTTG)n Simple_repeat Simple_repeat 2 24 0 5 969 305 289 141 0 chr3 50412426 50412547 -109187236 - B1F2 SINE Alu -9 140 3 5 969 21 0 0 0 chr3 50414433 50414454 -109185329 + AT_rich Low_complexity Low_complexity 1 21 0 5 969 774 0 0 0 chr3 50414488 50414574 -109185209 + (GGAA)n Simple_repeat Simple_repeat 3 88 0 5 969 234 324 58 22 chr3 50414672 50414811 -109184972 - L1MA6 LINE L1 -140 6160 6017 5 969 322 304 51 25 chr3 50414978 50415096 -109184687 + Charlie5 DNA MER1_type 1 121 -2503 5 969 411 289 94 24 chr3 50415174 50415344 -109184439 + B3A SINE B2 2 183 -15 5 969 4254 134 83 6 chr3 50415376 50416060 -109183723 - RMER19A LTR ERVK 0 737 1 5 969 1825 232 20 5 chr3 50416182 50416589 -109183194 - Lx5 LINE L1 0 7050 6638 5 969 742 282 100 19 chr3 50417786 50418046 -109181737 - B4A SINE B4 -10 282 2 5 969 724 270 142 32 chr3 50418262 50418480 -109181303 + B4 SINE B4 42 283 -9 5 969 207 0 0 0 chr3 50418497 50418520 -109181263 + (CA)n Simple_repeat Simple_repeat 2 24 0 5 969 405 102 0 0 chr3 50418522 50418581 -109181202 + (GGGAGA)n Simple_repeat Simple_repeat 3 61 0 5 969 180 140 227 23 chr3 50418815 50418859 -109180924 - L2 LINE L2 -1052 2367 2315 5 969 316 368 135 23 chr3 50420181 50420440 -109179343 + LTR78 LTR ERV1 999 1286 -18 5 969 252 316 21 10 chr3 50420753 50420849 -109178934 + ID_B1 SINE B4 79 175 -49 5 969 353 283 11 0 chr3 50420764 50420856 -109178927 + PB1D10 SINE Alu 9 101 -16 5 969 762 131 0 0 chr3 50420902 50421024 -109178759 + (GGGA)n Simple_repeat Simple_repeat 3 124 0 5 969 374 257 19 28 chr3 50422463 50422571 -109177212 - PB1D10 SINE Alu -10 107 1 5 969 264 214 4 0 chr3 50423328 50423394 -109176389 + MTEb LTR MaLR 287 353 -26 5 969 213 322 171 36 chr3 50423858 50424109 -109175674 + L2a LINE L2 2913 3197 -229 5 969 957 299 104 30 chr3 50424134 50424537 -109175246 + MER44B DNA MER2_type 10 442 -108 5 969 2333 155 16 21 chr3 50424537 50424816 -109174967 + ORR1B1 LTR MaLR 1 284 -110 5 969 5280 108 153 2 chr3 50424816 50425670 -109174113 + RLTR13C1 LTR ERVK 1 983 0 5 969 2333 155 16 21 chr3 50425670 50425778 -109174005 + ORR1B1 LTR MaLR 285 386 -8 5 969 465 19 0 0 chr3 50425796 50425850 -109173933 + (TC)n Simple_repeat Simple_repeat 1 54 0 5 969 330 26 0 0 chr3 50425850 50425888 -109173895 + (CA)n Simple_repeat Simple_repeat 1 39 0 5 969 575 174 21 7 chr3 50425926 50426071 -109173712 + (TA)n Simple_repeat Simple_repeat 2 148 0 5 969 259 325 40 57 chr3 50426284 50426408 -109173375 + MIR SINE MIR 6 127 -135 5 969 1105 245 150 18 chr3 50429060 50429393 -109170390 + MTEb LTR MaLR 3 379 0 5 969 248 344 21 11 chr3 50430196 50430290 -109169493 + MIR SINE MIR 42 136 -72 5 969 228 342 57 82 chr3 50430781 50430940 -109168843 + MT-int LTR MaLR 537 691 -407 5 969 308 241 54 54 chr3 50431273 50431365 -109168418 - PB1D10 SINE Alu -1 116 25 5 969 197 288 161 48 chr3 50431392 50431560 -109168223 - MIRc SINE MIR -35 233 47 5 969 309 223 0 0 chr3 50431830 50431924 -109167859 + GA-rich Low_complexity Low_complexity 3 96 0 5 969 327 307 55 72 chr3 50432826 50433061 -109166722 - L1M5 LINE L1 -2843 3303 3073 5 969 354 301 55 13 chr3 50433890 50434151 -109165632 + L1M2 LINE L1 1507 1796 -4051 5 969 927 246 119 6 chr3 50434178 50434512 -109165271 + MTEa LTR MaLR 8 379 0 5 969 552 299 114 49 chr3 50434784 50435336 -109164447 + L1M2 LINE L1 2076 2689 -3454 5 969 1223 209 232 15 chr3 50435348 50435688 -109164095 + MTD LTR MaLR 6 419 0 5 969 429 20 0 0 chr3 50437507 50437557 -109162226 + (CA)n Simple_repeat Simple_repeat 2 51 0 5 969 42 0 0 0 chr3 50437985 50438027 -109161756 + AT_rich Low_complexity Low_complexity 1 42 0 5 969 245 349 27 27 chr3 50439172 50439284 -109160499 - MamRep137 DNA TcMar? -17 427 316 5 969 789 279 30 5 chr3 50439437 50439639 -109160144 - B4A SINE B4 -12 280 74 5 969 513 0 0 0 chr3 50439787 50439844 -109159939 + (GA)n Simple_repeat Simple_repeat 2 58 0 5 969 28 29 0 0 chr3 50440063 50440098 -109159685 + AT_rich Low_complexity Low_complexity 1 35 0 5 969 1486 81 0 0 chr3 50440099 50440297 -109159486 - L1_Mus2 LINE L1 0 6566 6369 5 969 823 234 124 35 chr3 50440307 50440789 -109158994 + RLTR20B3 LTR ERVK 10 534 0 5 969 207 0 0 0 chr3 50441349 50441372 -109158411 + (A)n Simple_repeat Simple_repeat 1 23 0 5 969 333 364 92 36 chr3 50441502 50441807 -109157976 - Arthur1 DNA Tip100 -3613 334 13 5 969 271 290 66 8 chr3 50442058 50442191 -109157592 - B4 SINE B4 -150 142 2 5 969 360 323 205 21 chr3 50442418 50442608 -109157175 + MLT1A0 LTR MaLR 141 365 0 5 969 723 259 7 7 chr3 50442640 50442788 -109156995 + B3A SINE B2 1 148 -50 5 969 468 0 0 0 chr3 50442788 50442840 -109156943 + (CA)n Simple_repeat Simple_repeat 1 52 0 5 969 542 336 103 12 chr3 50443072 50443325 -109156458 + B4A SINE B4 3 278 -14 5 969 1365 63 0 0 chr3 50443357 50443690 -109156093 + (CAGAGA)n Simple_repeat Simple_repeat 1 333 0 5 969 664 261 58 39 chr3 50444705 50444912 -109154871 + B3 SINE B2 2 212 -4 5 969 357 232 56 83 chr3 50444988 50445096 -109154687 + B1_Mur2 SINE Alu 43 147 -2 5 969 369 232 9 18 chr3 50446501 50446615 -109153168 + Lx9 LINE L1 7532 7644 0 5 969 824 33 32 16 chr3 50446838 50446962 -109152821 + (TAGA)n Simple_repeat Simple_repeat 4 129 0 5 969 491 256 25 8 chr3 50446962 50447084 -109152699 + RMER20B LTR ERVK 2 125 -502 5 969 621 0 0 0 chr3 50447456 50447525 -109152258 + (TAGA)n Simple_repeat Simple_repeat 2 70 0 5 969 291 347 81 6 chr3 50447616 50447790 -109151993 + MIR SINE MIR 70 256 -6 5 969 670 286 129 35 chr3 50447905 50448586 -109151197 + L1MA5A LINE L1 5256 6020 -277 5 969 606 242 43 0 chr3 50449131 50449300 -109150483 + B3A SINE B2 11 184 -32 5 969 324 0 0 0 chr3 50449304 50449340 -109150443 + (CA)n Simple_repeat Simple_repeat 1 36 0 5 969 549 297 14 7 chr3 50450259 50450398 -109149385 - B4 SINE B4 0 292 153 5 969 1040 274 20 38 chr3 50450409 50450701 -109149082 - B4A SINE B4 -4 288 2 5 969 322 300 40 30 chr3 50450792 50450948 -109148835 - L1ME2z LINE L1 -127 6035 5885 5 969 26 50 0 0 chr3 50451003 50451043 -109148740 + AT_rich Low_complexity Low_complexity 1 40 0 6 969 1142 48 7 52 chr3 50451095 50451238 -109148545 + B1_Mm SINE Alu 2 140 -7 6 969 645 49 0 0 chr3 50451238 50451319 -109148464 + (TAGA)n Simple_repeat Simple_repeat 4 84 0 6 969 7089 226 45 58 chr3 50451349 50451911 -109147872 - Lx6 LINE L1 -21 7439 6898 6 969 635 0 13 0 chr3 50451911 50451986 -109147797 + (TAGA)n Simple_repeat Simple_repeat 3 78 0 6 969 7089 226 45 58 chr3 50451986 50452492 -109147291 - Lx6 LINE L1 -563 6897 6395 6 969 576 120 0 0 chr3 50452492 50452592 -109147191 + (TG)n Simple_repeat Simple_repeat 2 101 0 6 969 7089 226 45 58 chr3 50452592 50453321 -109146462 - Lx6 LINE L1 -1066 6394 5665 6 969 800 20 10 0 chr3 50453596 50453694 -109146089 + (TAGA)n Simple_repeat Simple_repeat 4 102 0 6 969 199 319 167 36 chr3 50455122 50455314 -109144469 + MIRb SINE MIR 16 232 -36 6 969 1376 80 0 92 chr3 50455596 50455802 -109143981 + L1_Mus2 LINE L1 6374 6560 -6 6 969 192 319 30 144 chr3 50458058 50458190 -109141593 - MIR SINE MIR -10 252 136 6 969 236 349 37 52 chr3 50458196 50458332 -109141451 + L1MC LINE L1 4013 4146 -2000 6 969 638 304 37 70 chr3 50458720 50458992 -109140791 - MTE2a LTR MaLR -98 281 19 6 969 261 295 206 40 chr3 50459130 50459377 -109140406 + L2 LINE L2 2134 2421 -998 6 969 990 251 60 151 chr3 50459380 50459797 -109139986 - MTE2a LTR MaLR 0 379 1 6 969 426 235 12 12 chr3 50460043 50460125 -109139658 + ID4 SINE ID 2 83 0 6 969 216 347 89 30 chr3 50460732 50460774 -109139009 + B4 SINE B4 38 85 -207 6 969 216 358 15 0 chr3 50460774 50460841 -109138942 + B1F2 SINE Alu 1 68 -81 6 969 238 324 0 119 chr3 50461244 50461328 -109138455 - B4 SINE B4 -3 289 216 6 969 225 94 0 0 chr3 50461331 50461363 -109138420 + (TTTTG)n Simple_repeat Simple_repeat 3 34 0 6 969 234 250 0 19 chr3 50461578 50461631 -109138152 + GA-rich Low_complexity Low_complexity 6 57 0 6 969 336 298 118 21 chr3 50461634 50461778 -109138005 + HAL1-3A_ME LINE L1 2282 2439 -419 6 969 249 108 0 0 chr3 50461778 50461815 -109137968 + (GGGA)n Simple_repeat Simple_repeat 1 37 0 6 970 355 355 71 57 chr3 50463157 50463369 -109136414 + B4A SINE B4 16 230 -62 6 970 238 299 0 0 chr3 50463409 50463486 -109136297 + (CA)n Simple_repeat Simple_repeat 1 77 0 6 970 1944 195 22 30 chr3 50463759 50464129 -109135654 + ORR1B2 LTR MaLR 1 367 0 6 970 249 338 87 91 chr3 50464870 50465134 -109134649 + ORR1E LTR MaLR 1 263 -96 6 970 557 331 114 26 chr3 50467238 50467623 -109132160 - L2a LINE L2 -267 3159 2747 6 970 1206 48 0 14 chr3 50468908 50469055 -109130728 + B1_Mus2 SINE Alu 1 145 -2 6 970 1196 81 0 0 chr3 50470109 50470257 -109129526 + B1_Mus1 SINE Alu 1 148 0 6 970 494 282 62 28 chr3 50470362 50470600 -109129183 + MTEa LTR MaLR 108 379 0 6 970 668 305 22 33 chr3 50470646 50470829 -109128954 + B3A SINE B2 2 182 -16 6 970 693 66 0 0 chr3 50470846 50470937 -109128846 + (GA)n Simple_repeat Simple_repeat 2 92 0 6 970 322 26 0 0 chr3 50471136 50471175 -109128608 + L1Md_F2 LINE L1 5266 5304 -579 6 970 38558 15 1 7 chr3 50471174 50476333 -109123450 + L1Md_A LINE L1 468 5586 -297 6 970 9267 21 0 0 chr3 50476333 50477327 -109122456 + L1Md_A LINE L1 5587 6580 -2 6 970 2594 30 0 3 chr3 50477356 50477656 -109122127 + L1Md_F2 LINE L1 5288 5586 -297 6 970 8885 30 10 5 chr3 50477657 50478645 -109121138 + L1Md_F2 LINE L1 5588 6580 -2 6 970 371 288 59 29 chr3 50479530 50479666 -109120117 + MTE-int LTR MaLR 308 447 -1133 6 970 760 231 32 85 chr3 50479787 50479976 -109119807 + B3A SINE B2 2 180 -18 6 970 444 232 0 145 chr3 50480046 50480156 -109119627 + B1_Mur1 SINE Alu 38 134 -15 6 970 180 111 0 0 chr3 50480156 50480183 -109119600 + (CAA)n Simple_repeat Simple_repeat 1 27 0 6 970 444 259 0 61 chr3 50480183 50480203 -109119580 + B1_Mur1 SINE Alu 135 149 0 6 970 2016 321 70 49 chr3 50480302 50481143 -109118640 + MTE-int LTR MaLR 669 1527 -53 6 970 271 395 0 7 chr3 50481143 50481278 -109118505 + ORR1E LTR MaLR 1 134 -225 6 970 196 277 167 65 chr3 50483692 50483800 -109115983 + MIRc SINE MIR 28 146 -122 6 970 474 264 15 23 chr3 50484135 50484267 -109115516 + B3A SINE B2 1 131 -67 6 970 700 284 128 0 chr3 50486020 50486263 -109113520 + B4A SINE B4 2 275 -17 6 970 28 48 0 0 chr3 50486386 50486428 -109113355 + AT_rich Low_complexity Low_complexity 1 42 0 6 970 475 270 71 13 chr3 50487004 50487158 -109112625 - L1MB1 LINE L1 -6 6162 6000 6 970 1063 273 73 36 chr3 50487277 50487638 -109112145 - MTE2b LTR MaLR -10 369 3 6 970 801 265 42 14 chr3 50488293 50488507 -109111276 + B4 SINE B4 1 220 -72 6 970 1127 104 46 0 chr3 50488514 50488687 -109111096 + B2_Mm2 SINE B2 14 194 -1 6 970 579 40 0 0 chr3 50488819 50488893 -109110890 + (CA)n Simple_repeat Simple_repeat 2 75 0 6 970 615 180 0 0 chr3 50489002 50489102 -109110681 - ORR1B1 LTR MaLR -294 100 1 6 970 243 320 88 37 chr3 50489113 50489297 -109110486 + MLT2C1 LTR ERVL 347 553 -10 6 970 21 36 0 0 chr3 50490315 50490343 -109109440 + AT_rich Low_complexity Low_complexity 1 28 0 6 970 542 271 0 8 chr3 50490828 50490947 -109108836 - PB1D7 SINE Alu -2 118 1 6 970 214 130 16 143 chr3 50492162 50492225 -109107558 - B3A SINE B2 -143 55 1 6 970 191 36 0 35 chr3 50492237 50492266 -109107517 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 6 970 313 308 13 13 chr3 50492291 50492370 -109107413 + B4A SINE B4 1 79 -213 6 970 217 302 99 50 chr3 50492370 50492392 -109107391 + B3A SINE B2 1 106 -92 6 970 225 65 0 0 chr3 50492623 50492654 -109107129 + (GA)n Simple_repeat Simple_repeat 2 32 0 6 970 421 317 142 50 chr3 50494275 50494761 -109105022 - L1MC4a LINE L1 -1999 5883 5351 6 970 297 0 0 0 chr3 50494761 50494794 -109104989 + (TC)n Simple_repeat Simple_repeat 2 34 0 6 970 421 317 142 50 chr3 50494794 50494829 -109104954 - L1MC4a LINE L1 -2532 5350 5316 6 970 427 357 59 49 chr3 50495075 50495399 -109104384 - L1MC4a LINE L1 -1033 5113 4787 6 970 317 287 122 43 chr3 50495854 50496018 -109103765 - MIRb SINE MIR -66 202 26 6 970 2651 143 134 89 chr3 50497094 50497654 -109102129 - RMER4B LTR ERVK 0 585 1 6 970 231 247 120 27 chr3 50497756 50497831 -109101952 + MIRc SINE MIR 17 98 -178 6 970 187 250 0 0 chr3 50498392 50498440 -109101343 - L3 LINE CR1 -323 4166 4119 6 970 366 243 14 0 chr3 50499916 50499990 -109099793 + ID4 SINE ID 2 76 -7 6 970 558 291 17 0 chr3 50500201 50500318 -109099465 + RSINE1 SINE B4 41 159 -6 1 970 40584 29 1 6 chr3 50500338 50506518 -109093265 - L1Md_A LINE L1 0 6582 442 2 970 611 308 97 54 chr3 50506749 50507067 -109092716 - ORR1E LTR MaLR -4 370 31 3 970 1205 75 0 0 chr3 50507143 50507290 -109092493 + B1_Mus1 SINE Alu 2 148 0 4 970 2094 182 17 11 chr3 50507955 50508317 -109091466 - ORR1B2 LTR MaLR 0 367 4 5 970 523 282 97 134 chr3 50509486 50509703 -109090080 + B4 SINE B4 84 292 0 6 970 242 180 48 32 chr3 50509831 50509894 -109089889 - MLT1I LTR MaLR -16 395 332 7 970 5773 210 24 33 chr3 50510700 50511917 -109087866 - Lx5 LINE L1 -6 7044 5839 8 970 366 87 0 0 chr3 50511912 50511958 -109087825 + L1_Mur2 LINE L1 5376 5421 -456 9 970 200 375 0 0 chr3 50512748 50512812 -109086971 - MER91B DNA Tip100 -126 64 1 1 970 187 152 43 0 chr3 50513233 50513279 -109086504 + GA-rich Low_complexity Low_complexity 2 49 0 1 970 1123 107 11 0 chr3 50513281 50513459 -109086324 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 1 970 475 239 55 80 chr3 50514270 50514470 -109085313 - L1MA6 LINE L1 0 6300 6106 1 970 2070 150 12 9 chr3 50514703 50515045 -109084738 + Lx4A LINE L1 5972 6314 -744 1 970 189 109 21 42 chr3 50515994 50516042 -109083741 + GA-rich Low_complexity Low_complexity 2 48 0 1 970 632 139 0 16 chr3 50516236 50516294 -109083489 + polypurine Low_complexity Low_complexity 2 59 0 1 970 1157 103 6 0 chr3 50516294 50516469 -109083314 + (GAA)n Simple_repeat Simple_repeat 3 178 0 1 970 632 139 0 16 chr3 50516469 50516534 -109083249 + polypurine Low_complexity Low_complexity 60 122 0 1 970 677 292 142 42 chr3 50516650 50517050 -109082733 + RLTR12B LTR ERVK 47 486 -42 1 970 246 298 187 37 chr3 50517135 50517435 -109082348 - L2a LINE L2 -38 3388 3044 2 970 243 318 101 31 chr3 50517994 50518153 -109081630 - L2a LINE L2 -1293 2126 1957 2 970 231 105 0 26 chr3 50518560 50518599 -109081184 + BGLII_A LTR ERVK 20 57 -388 2 970 1226 213 27 27 chr3 50518620 50518919 -109080864 + RLTR20B3 LTR ERVK 235 533 -44 2 970 22 0 0 0 chr3 50518922 50518944 -109080839 + AT_rich Low_complexity Low_complexity 1 22 0 2 970 1824 49 4 0 chr3 50519284 50519509 -109080274 + L1_Mus1 LINE L1 6317 6542 -25 2 970 240 35 0 0 chr3 50519534 50519563 -109080220 + (TTAA)n Simple_repeat Simple_repeat 1 29 0 2 970 414 314 156 22 chr3 50519597 50519867 -109079916 + MLT1J LTR MaLR 1 306 -206 2 970 548 253 48 191 chr3 50521536 50521766 -109078017 - B3A SINE B2 0 198 2 2 970 298 370 103 14 chr3 50524033 50524247 -109075536 + MIRb SINE MIR 26 258 -10 2 970 414 296 96 26 chr3 50525758 50525914 -109073869 + RMER15 LTR ERVL 359 525 -50 2 970 224 372 75 33 chr3 50526257 50526471 -109073312 + MIRb SINE MIR 33 255 -13 3 970 494 260 40 8 chr3 50527880 50528004 -109071779 + ID_B1 SINE B4 96 223 -1 3 970 675 221 0 0 chr3 50529586 50529744 -109070039 + (TA)n Simple_repeat Simple_repeat 2 159 0 3 970 342 276 29 110 chr3 50529746 50529885 -109069898 + MLT1A LTR MaLR 8 147 -227 3 970 453 214 10 48 chr3 50530065 50530083 -109069700 - PB1D7 SINE Alu 0 120 107 3 970 315 0 0 0 chr3 50530083 50530118 -109069665 + (ATTTG)n Simple_repeat Simple_repeat 5 39 0 3 970 453 220 9 52 chr3 50530118 50530223 -109069560 - PB1D7 SINE Alu -14 106 1 3 970 238 283 147 28 chr3 50530704 50530813 -109068970 + Charlie17a DNA MER1_type 16 137 -82 3 970 614 297 65 23 chr3 50530859 50531073 -109068710 - MER58A DNA MER1_type 0 224 2 3 970 1511 54 32 5 chr3 50531203 50531389 -109068394 + B2_Mm2 SINE B2 2 192 -3 3 970 35 54 0 0 chr3 50531427 50531483 -109068300 + AT_rich Low_complexity Low_complexity 1 56 0 3 970 351 0 0 0 chr3 50532154 50532193 -109067590 + (TA)n Simple_repeat Simple_repeat 1 39 0 4 970 1464 242 58 23 chr3 50533065 50533412 -109066371 - ORR1D2 LTR MaLR -5 365 7 4 970 818 284 175 32 chr3 50534932 50535394 -109064389 + MT2A LTR ERVL 6 533 0 4 970 2842 91 123 0 chr3 50535521 50535904 -109063879 - RLTR23 LTR ERV1 0 430 1 4 970 684 225 42 7 chr3 50536115 50536258 -109063525 + ID_B1 SINE B4 73 220 -4 4 970 900 231 99 13 chr3 50537973 50538206 -109061577 + Lx2B LINE L1 6748 7000 0 4 970 346 292 73 0 chr3 50538455 50538551 -109061232 - PB1D9 SINE Alu -7 113 11 4 970 2198 121 0 3 chr3 50539230 50539537 -109060246 + Lx LINE L1 6347 6652 -2 4 970 296 328 42 0 chr3 50539607 50539726 -109060057 + L1MC4 LINE L1 6697 6820 -1175 4 970 412 291 45 6 chr3 50539744 50539920 -109059863 + L1MC4 LINE L1 7477 7659 -383 4 970 4116 102 11 26 chr3 50540041 50540648 -109059135 - Lx4A LINE L1 0 5877 5280 4 970 7263 149 39 3 chr3 50540648 50541778 -109058005 + Lx4A LINE L1 5885 7054 -4 4 970 341 301 19 0 chr3 50541800 50541903 -109057880 + ORR1D2 LTR MaLR 213 317 -53 5 970 1312 99 7 0 chr3 50541906 50542332 -109057451 + (GA)n Simple_repeat Simple_repeat 1 428 0 5 970 461 256 0 83 chr3 50542471 50542603 -109057180 - RSINE1 SINE B4 0 165 45 5 970 233 343 37 56 chr3 50542672 50542888 -109056895 + L1MC4 LINE L1 7693 7904 -138 4 970 213 65 0 0 chr3 50543189 50543220 -109056563 + (A)n Simple_repeat Simple_repeat 1 31 0 5 970 257 354 59 42 chr3 50543386 50543504 -109056279 - MIR SINE MIR -59 149 30 5 970 414 200 0 0 chr3 50544455 50544525 -109055258 + MTEb LTR MaLR 1 70 -309 5 970 937 274 124 9 chr3 50544525 50544856 -109054927 - MTD LTR MaLR 0 419 51 5 970 422 263 0 20 chr3 50544949 50545050 -109054733 - MTD LTR MaLR -319 100 2 5 970 741 288 152 47 chr3 50545052 50545329 -109054454 + MTEb LTR MaLR 67 372 -7 5 970 668 253 103 44 chr3 50545693 50545896 -109053887 - RMER21B LTR ERV1 -280 562 348 5 970 786 97 0 0 chr3 50546282 50546395 -109053388 + (TC)n Simple_repeat Simple_repeat 1 113 0 5 970 4236 162 124 19 chr3 50546482 50547257 -109052526 - RMER13A LTR ERVK 0 860 5 5 970 435 194 66 28 chr3 50547307 50547413 -109052370 + MTEa LTR MaLR 268 377 -2 6 970 254 275 129 21 chr3 50547651 50547744 -109052039 + MIRb SINE MIR 56 158 -110 6 970 372 292 60 30 chr3 50547861 50547995 -109051788 - MIRb SINE MIR -72 196 59 6 970 240 111 0 0 chr3 50549805 50549841 -109049942 + (TC)n Simple_repeat Simple_repeat 2 37 0 6 970 198 0 0 0 chr3 50550983 50551005 -109048778 + (CAAAAA)n Simple_repeat Simple_repeat 2 23 0 6 970 426 271 47 83 chr3 50551027 50551196 -109048587 + RSINE1 SINE B4 3 165 0 6 970 279 227 0 0 chr3 50551198 50551264 -109048519 + (CA)n Simple_repeat Simple_repeat 1 66 0 6 970 21 36 0 0 chr3 50551358 50551386 -109048397 + AT_rich Low_complexity Low_complexity 1 28 0 6 970 376 330 43 60 chr3 50551926 50552158 -109047625 + MIRb SINE MIR 24 251 -17 6 970 327 356 25 0 chr3 50552264 50552382 -109047401 + B4 SINE B4 2 122 -170 6 970 915 267 215 16 chr3 50554640 50554956 -109044827 + MTEa LTR MaLR 1 379 0 7 970 4164 250 72 20 chr3 50555869 50557044 -109042739 - Tigger1 DNA MER2_type -44 2374 1139 7 970 478 256 83 0 chr3 50557471 50557592 -109042191 + MLT1B LTR MaLR 3 133 -257 7 970 306 305 11 21 chr3 50557639 50557765 -109042018 + MLT1B LTR MaLR 256 387 -21 7 970 258 105 0 0 chr3 50558184 50558222 -109041561 + (TA)n Simple_repeat Simple_repeat 2 39 0 7 970 1049 240 122 24 chr3 50558618 50558955 -109040828 - MTEb LTR MaLR -4 375 6 7 970 214 125 0 67 chr3 50558976 50559036 -109040747 + A-rich Low_complexity Low_complexity 6 61 0 7 970 896 270 23 0 chr3 50559596 50559859 -109039924 - L1MA6 LINE L1 -6 6294 6026 7 970 486 326 40 6 chr3 50560251 50560424 -109039359 + B3A SINE B2 4 182 -16 7 970 332 222 46 9 chr3 50560473 50560582 -109039201 - L1MA6 LINE L1 -79 6221 6109 7 970 289 310 150 19 chr3 50560742 50561002 -109038781 - L2 LINE L2 -444 2975 2682 7 970 235 361 90 50 chr3 50561463 50561664 -109038119 - L2 LINE L2 -1006 2413 2205 7 970 228 375 125 29 chr3 50561696 50561968 -109037815 - L2 LINE L2 -1469 1950 1653 7 970 667 350 81 30 chr3 50562062 50562395 -109037388 + ORR1E LTR MaLR 6 355 -4 8 970 210 368 16 16 chr3 50562455 50562582 -109037201 - L2 LINE L2 -786 2633 2507 8 970 1330 322 100 28 chr3 50562587 50563274 -109036509 + MER63C DNA AcHobo 26 762 -168 8 970 345 47 0 0 chr3 50563294 50563337 -109036446 + (TG)n Simple_repeat Simple_repeat 1 43 0 8 970 261 282 87 75 chr3 50563530 50563687 -109036096 + ORR1E LTR MaLR 209 367 -12 8 970 838 198 32 43 chr3 50563687 50563872 -109035911 + ORR1E-int LTR MaLR 1 183 -1397 8 970 315 280 54 0 chr3 50563851 50563920 -109035863 + ORR1E-int LTR MaLR 1454 1527 -53 8 970 288 333 16 48 chr3 50563920 50564046 -109035737 + ORR1E LTR MaLR 1 122 -237 8 970 222 118 0 0 chr3 50565312 50565346 -109034437 + (A)n Simple_repeat Simple_repeat 1 34 0 8 970 572 0 0 14 chr3 50565409 50565478 -109034305 + (TG)n Simple_repeat Simple_repeat 2 69 0 8 970 1386 290 58 71 chr3 50565591 50565682 -109034101 - L1MD2 LINE L1 -393 5966 5883 8 970 219 36 0 0 chr3 50565682 50565710 -109034073 + (CACCC)n Simple_repeat Simple_repeat 4 31 0 8 970 1386 281 64 57 chr3 50565710 50566383 -109033400 - L1MD2 LINE L1 -477 5882 5213 8 970 21 0 0 0 chr3 50566698 50566719 -109033064 + AT_rich Low_complexity Low_complexity 1 21 0 8 971 294 132 0 0 chr3 50617648 50617701 -108982082 + (TG)n Simple_repeat Simple_repeat 2 54 0 9 971 744 96 0 0 chr3 50617754 50617869 -108981914 + (TG)n Simple_repeat Simple_repeat 2 116 0 9 971 327 105 0 0 chr3 50617922 50617979 -108981804 + (TG)n Simple_repeat Simple_repeat 2 58 0 9 971 527 176 8 0 chr3 50618033 50618158 -108981625 + (TG)n Simple_repeat Simple_repeat 2 127 0 9 971 601 317 56 15 chr3 50618212 50618481 -108981302 - B4A SINE B4 -4 288 9 9 971 370 253 14 9 chr3 50618733 50618859 -108980924 - L1MA4 LINE L1 -380 5917 5787 9 971 467 320 116 17 chr3 50618878 50619180 -108980603 - MLT1D LTR MaLR -92 413 82 9 971 524 299 13 25 chr3 50619455 50619613 -108980170 + ID_B1 SINE B4 56 211 -13 9 971 194 196 123 18 chr3 50620690 50620747 -108979036 + MIR3 SINE MIR 144 206 -2 9 971 23 0 0 0 chr3 50620960 50620983 -108978800 + AT_rich Low_complexity Low_complexity 1 23 0 9 971 1968 272 42 18 chr3 50620983 50621687 -108978096 - Lx5 LINE L1 -1 7049 6455 9 971 298 277 44 37 chr3 50622536 50622671 -108977112 + L1MA8 LINE L1 6125 6260 -31 9 971 370 344 0 30 chr3 50622710 50622842 -108976941 + RSINE1 SINE B4 3 130 -35 9 971 198 0 0 0 chr3 50622844 50622866 -108976917 + (CA)n Simple_repeat Simple_repeat 2 23 0 1 971 273 244 0 0 chr3 50624150 50624236 -108975547 + (TG)n Simple_repeat Simple_repeat 1 86 0 1 971 548 241 0 6 chr3 50624268 50624443 -108975340 + (TG)n Simple_repeat Simple_repeat 1 174 0 1 971 231 227 0 0 chr3 50624459 50624525 -108975258 + (TG)n Simple_repeat Simple_repeat 1 66 0 1 971 296 284 12 0 chr3 50624998 50625079 -108974704 - ID4 SINE ID -1 82 1 1 971 21 0 0 0 chr3 50625079 50625100 -108974683 + AT_rich Low_complexity Low_complexity 1 21 0 1 971 252 86 0 0 chr3 50625166 50625201 -108974582 + (TA)n Simple_repeat Simple_repeat 1 35 0 1 971 194 294 147 0 chr3 50625246 50625348 -108974435 + L2a LINE L2 3305 3421 -5 1 971 321 282 66 61 chr3 50626789 50626970 -108972813 + LTR33 LTR ERVL 334 515 0 1 971 299 264 0 145 chr3 50627516 50627629 -108972154 - PB1D10 SINE Alu -48 101 1 1 971 271 290 0 42 chr3 50628262 50628334 -108971449 - ID4 SINE ID -1 82 14 1 971 238 241 0 35 chr3 50628616 50628702 -108971081 + MTEb LTR MaLR 272 354 -25 1 971 551 257 68 6 chr3 50628961 50629137 -108970646 - L1MC4a LINE L1 -1977 5905 5719 1 971 200 286 0 0 chr3 50631287 50631336 -108968447 + GA-rich Low_complexity Low_complexity 5 53 0 1 971 415 184 0 13 chr3 50631531 50631608 -108968175 + B3A SINE B2 1 76 -122 1 971 450 96 0 0 chr3 50631659 50631732 -108968051 + (CA)n Simple_repeat Simple_repeat 1 73 0 1 971 439 311 11 73 chr3 50632682 50632784 -108966999 + ID_B1 SINE B4 1 92 -132 1 971 1729 158 128 18 chr3 50632784 50633120 -108966663 + ORR1C1 LTR MaLR 5 377 -1 1 971 439 311 11 73 chr3 50633120 50633194 -108966589 + ID_B1 SINE B4 93 166 -58 1 971 460 272 83 17 chr3 50633214 50633407 -108966376 + B3A SINE B2 2 200 -16 1 971 329 239 0 33 chr3 50633414 50633505 -108966278 + HAL1-3A_ME LINE L1 1979 2066 -792 1 971 5034 64 9 38 chr3 50633511 50634193 -108965590 + L1Md_T LINE L1 5908 6569 -13 1 971 27 29 0 0 chr3 50634193 50634227 -108965556 + AT_rich Low_complexity Low_complexity 1 34 0 1 971 263 305 200 52 chr3 50635849 50636495 -108963288 + L1MEf LINE L1 1 755 -5645 1 971 333 47 0 0 chr3 50636495 50636538 -108963245 + (CAGA)n Simple_repeat Simple_repeat 2 44 0 1 971 263 305 200 52 chr3 50636538 50636621 -108963162 + L1MEf LINE L1 756 838 -5562 1 971 249 312 106 72 chr3 50637060 50637101 -108962682 + L1MEf LINE L1 818 858 -5542 1 971 1433 228 58 30 chr3 50637101 50637463 -108962320 + ORR1D1 LTR MaLR 3 374 0 1 971 249 312 106 72 chr3 50637463 50637792 -108961991 + L1MEf LINE L1 859 1197 -5203 1 971 2316 57 0 0 chr3 50637792 50638074 -108961709 - L1_Mus1 LINE L1 0 6567 6286 1 971 249 312 106 72 chr3 50638074 50638518 -108961265 + L1MEf LINE L1 1198 1667 -4733 1 971 539 253 63 29 chr3 50638518 50638693 -108961090 + B3A SINE B2 2 182 -16 1 971 369 312 106 72 chr3 50638693 50639399 -108960384 + L1MEf LINE L1 1668 2392 -4008 1 971 559 282 38 6 chr3 50639591 50639748 -108960035 + RSINE1 SINE B4 4 165 0 1 971 528 59 0 0 chr3 50640608 50640676 -108959107 + (TAA)n Simple_repeat Simple_repeat 2 69 0 1 971 213 121 0 0 chr3 50640677 50640710 -108959073 + (TTA)n Simple_repeat Simple_repeat 3 35 0 1 971 630 175 45 45 chr3 50641109 50641241 -108958542 + B1_Mur2 SINE Alu 13 144 -5 1 971 186 43 0 0 chr3 50641249 50641272 -108958511 + (GAAAA)n Simple_repeat Simple_repeat 2 24 0 1 971 1617 242 128 146 chr3 50641320 50642358 -108957425 - RMER1A Other Other -2 1064 45 1 971 397 271 82 14 chr3 50643251 50643397 -108956386 + MTC LTR MaLR 7 162 -259 1 971 258 295 46 37 chr3 50643607 50643716 -108956067 - MTEa LTR MaLR -262 117 8 1 971 212 363 87 23 chr3 50644089 50644261 -108955522 + L2c LINE L2 2919 3101 -286 1 971 207 0 0 0 chr3 50645475 50645498 -108954285 + (TC)n Simple_repeat Simple_repeat 2 24 0 1 971 3576 15 0 2 chr3 50647109 50647506 -108952277 - MTA_Mm LTR MaLR 0 396 1 1 971 192 321 12 24 chr3 50647880 50647963 -108951820 + MIR3 SINE MIR 122 203 -5 1 971 536 297 18 57 chr3 50648290 50648572 -108951211 + B4A SINE B4 1 271 -21 1 971 342 0 0 0 chr3 50648608 50648646 -108951137 + (CA)n Simple_repeat Simple_repeat 1 38 0 1 971 2342 191 7 10 chr3 50650118 50650536 -108949247 - MTC LTR MaLR 0 421 5 1 971 2569 77 26 3 chr3 50650635 50650986 -108948797 + L1_Mus4 LINE L1 6276 6634 -2 1 971 262 207 17 17 chr3 50653200 50653259 -108946524 + Lx8 LINE L1 6880 6938 -535 1 971 378 0 0 0 chr3 50653259 50653301 -108946482 + (A)n Simple_repeat Simple_repeat 1 42 0 1 971 740 302 63 66 chr3 50653309 50653380 -108946403 + Lx8 LINE L1 6940 7014 -459 1 971 640 227 55 88 chr3 50653380 50653597 -108946186 + B3 SINE B2 2 211 -5 1 971 740 302 63 66 chr3 50653597 50653844 -108945939 + Lx8 LINE L1 7015 7257 -216 1 971 2609 52 3 6 chr3 50653977 50654305 -108945478 + L1_Mus2 LINE L1 6240 6566 0 1 971 4131 74 15 2 chr3 50654301 50654887 -108944896 + L1Md_F2 LINE L1 6014 6582 0 1 971 452 286 38 0 chr3 50655433 50655566 -108944217 + B3A SINE B2 16 153 -45 1 971 278 50 25 0 chr3 50655568 50655608 -108944175 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 971 260 321 92 29 chr3 50656231 50656404 -108943379 + MLT1E2 LTR MaLR 1 184 -443 1 971 287 128 0 167 chr3 50656607 50656691 -108943092 + MLT1D LTR MaLR 436 505 0 1 971 1199 51 11 22 chr3 50656746 50656928 -108942855 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 1 971 2796 227 52 181 chr3 50656951 50658031 -108941752 - Lx6 LINE L1 -4 7456 6517 1 971 491 212 0 0 chr3 50658036 50658121 -108941662 + B3 SINE B2 57 141 -75 1 971 3250 56 5 2 chr3 50658153 50658548 -108941235 + MTA_Mm LTR MaLR 1 396 0 1 971 1100 203 35 0 chr3 50659710 50659937 -108939846 - MTD LTR MaLR -2 417 183 1 971 231 358 43 36 chr3 50660130 50660269 -108939514 - MIRb SINE MIR -38 230 91 1 971 3703 102 0 55 chr3 50660462 50661031 -108938752 - Lx2A LINE L1 -5 7003 6466 1 971 495 317 36 64 chr3 50661195 50661508 -108938275 + MTE2a LTR MaLR 18 321 -98 1 971 2840 81 44 3 chr3 50661508 50661892 -108937891 - MTB LTR MaLR 0 400 1 1 971 392 230 0 0 chr3 50661944 50662018 -108937765 - RMER1B Other Other -783 283 210 1 971 237 320 50 39 chr3 50663308 50663487 -108936296 - L3 LINE CR1 -754 3735 3555 1 971 385 255 19 19 chr3 50663493 50663601 -108936182 + RMER15 LTR ERVL 357 464 -111 1 971 275 242 17 241 chr3 50664194 50664368 -108935415 + RMER15 LTR ERVL 1 135 -440 1 971 838 297 43 47 chr3 50664381 50664572 -108935211 + RMER15 LTR ERVL 274 466 -109 1 971 2291 37 4 0 chr3 50664572 50664842 -108934941 + L1Md_A LINE L1 6312 6582 0 1 971 838 297 43 47 chr3 50664842 50664950 -108934833 + RMER15 LTR ERVL 467 572 -3 1 971 1051 30 0 0 chr3 50665624 50665757 -108934026 + L1Md_T LINE L1 6449 6581 -1 1 971 665 281 16 10 chr3 50666076 50666270 -108933513 + B3 SINE B2 3 197 -19 1 971 22 35 0 0 chr3 50666384 50666413 -108933370 + AT_rich Low_complexity Low_complexity 1 29 0 1 971 752 200 89 24 chr3 50666805 50666974 -108932809 + B3A SINE B2 3 182 -16 1 971 329 325 8 73 chr3 50667024 50667147 -108932636 + PB1D7 SINE Alu 6 120 0 1 971 1258 50 6 6 chr3 50667336 50667497 -108932286 + MTA_Mm LTR MaLR 236 396 0 1 971 7136 53 84 74 chr3 50667497 50668585 -108931198 + MTA_Mm-int LTR MaLR 1 1098 0 1 971 3250 58 2 2 chr3 50668585 50668981 -108930802 + MTA_Mm LTR MaLR 1 396 0 1 971 2127 159 30 3 chr3 50669201 50669566 -108930217 + Lx LINE L1 6279 6653 -1 1 971 189 74 0 0 chr3 50670507 50670534 -108929249 + (CA)n Simple_repeat Simple_repeat 2 28 0 1 971 291 28 0 0 chr3 50670646 50670682 -108929101 + (CA)n Simple_repeat Simple_repeat 1 36 0 1 971 940 306 78 24 chr3 50670824 50671323 -108928460 - L1MA4 LINE L1 -426 5874 5349 1 971 734 268 233 7 chr3 50671847 50672118 -108927665 + MTEb LTR MaLR 42 374 -5 1 971 261 0 0 0 chr3 50672341 50672370 -108927413 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 1 971 3671 143 38 16 chr3 50672459 50673090 -108926693 - Lx4B LINE L1 -7 7051 6407 1 971 278 353 51 14 chr3 50673095 50673233 -108926550 - MIRb SINE MIR -39 229 87 1 971 213 39 0 0 chr3 50673639 50673665 -108926118 + (TAAAA)n Simple_repeat Simple_repeat 1 26 0 1 971 193 57 0 54 chr3 50673931 50673968 -108925815 + (TGGGGG)n Simple_repeat Simple_repeat 3 37 0 1 971 379 182 130 0 chr3 50674466 50674543 -108925240 + B3A SINE B2 2 88 -110 1 971 294 311 103 26 chr3 50675394 50675549 -108924234 + RMER15 LTR ERVL 408 574 -1 1 971 726 12 0 0 chr3 50676277 50676360 -108923423 + (GGAA)n Simple_repeat Simple_repeat 3 85 0 1 971 1418 79 11 0 chr3 50677331 50677521 -108922262 + B2_Mm1t SINE B2 2 193 0 1 971 628 318 20 40 chr3 50677708 50677908 -108921875 - B3A SINE B2 0 198 3 1 971 441 0 0 0 chr3 50678506 50678555 -108921228 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 971 337 288 36 24 chr3 50678854 50679036 -108920747 + L1MB8 LINE L1 5488 5671 -493 1 971 565 343 135 18 chr3 50679039 50679440 -108920343 - MER31B LTR ERV1 0 466 19 1 971 412 322 65 17 chr3 50679583 50679814 -108919969 + L1MB8 LINE L1 5813 6054 -124 1 971 180 0 0 0 chr3 50680095 50680115 -108919668 + (CA)n Simple_repeat Simple_repeat 2 21 0 1 971 664 255 26 13 chr3 50680522 50680677 -108919106 + RSINE1 SINE B4 3 159 -6 1 971 36 0 0 0 chr3 50680696 50680732 -108919051 + AT_rich Low_complexity Low_complexity 1 36 0 1 971 649 288 30 25 chr3 50680741 50680944 -108918839 + ID_B1 SINE B4 1 204 -20 1 971 234 339 144 41 chr3 50681291 50681534 -108918249 - MLT1L LTR MaLR -30 580 313 1 971 461 315 11 57 chr3 50681791 50681853 -108917930 - B4 SINE B4 -23 269 213 1 971 390 21 0 0 chr3 50681853 50681900 -108917883 + (GTGTG)n Simple_repeat Simple_repeat 4 50 0 1 971 461 320 12 48 chr3 50681900 50682032 -108917751 - B4 SINE B4 -79 213 83 1 971 501 68 0 0 chr3 50682507 50682581 -108917202 + (TTGG)n Simple_repeat Simple_repeat 2 75 0 1 971 660 255 31 74 chr3 50682583 50682812 -108916971 - ID_B1 SINE B4 -5 219 1 1 971 209 238 32 0 chr3 50683856 50683919 -108915864 + (TCTG)n Simple_repeat Simple_repeat 4 68 0 1 971 572 264 10 73 chr3 50683922 50684114 -108915669 - B3A SINE B2 -16 182 3 1 971 618 84 28 0 chr3 50684415 50684522 -108915261 + (TCTA)n Simple_repeat Simple_repeat 2 111 0 1 971 270 193 0 0 chr3 50687298 50687355 -108912428 + (TG)n Simple_repeat Simple_repeat 2 58 0 2 971 4653 213 72 22 chr3 50688064 50689070 -108910713 - RMER1B Other Other -4 1062 7 2 971 306 152 0 0 chr3 50689752 50689811 -108909972 + (CA)n Simple_repeat Simple_repeat 2 60 0 2 971 546 266 18 9 chr3 50691449 50691563 -108908220 + B4 SINE B4 2 116 -176 2 971 778 279 71 38 chr3 50691588 50691800 -108907983 + B4 SINE B4 3 221 -71 2 971 429 20 0 0 chr3 50691801 50691851 -108907932 + (CA)n Simple_repeat Simple_repeat 2 51 0 2 971 371 171 0 114 chr3 50692647 50692726 -108907057 + Lx8 LINE L1 7079 7148 -325 2 971 603 339 72 63 chr3 50692794 50693254 -108906529 + MLT1G1 LTR MaLR 93 556 -23 2 971 326 375 99 58 chr3 50693468 50693813 -108905970 + ORR1E LTR MaLR 1 359 0 2 971 203 125 107 0 chr3 50693824 50693880 -108905903 + (GTTTG)n Simple_repeat Simple_repeat 3 64 0 2 971 308 17 83 17 chr3 50693892 50693952 -108905831 + (TTTG)n Simple_repeat Simple_repeat 1 64 0 2 971 195 69 0 0 chr3 50693983 50694012 -108905771 + (T)n Simple_repeat Simple_repeat 1 29 0 2 971 270 0 0 0 chr3 50694012 50694042 -108905741 + (TTGG)n Simple_repeat Simple_repeat 2 31 0 2 971 1134 84 0 0 chr3 50694042 50694185 -108905598 - B1_Mus1 SINE Alu -3 145 3 2 971 341 296 107 27 chr3 50694244 50694393 -108905390 + Charlie15a DNA MER1_type 64 224 0 2 971 902 251 80 93 chr3 50695381 50695760 -108904023 - MLT1B LTR MaLR -8 357 7 2 971 901 246 0 23 chr3 50696021 50696241 -108903542 - B3 SINE B2 0 216 2 2 971 1302 267 7 14 chr3 50696820 50697109 -108902674 - B4 SINE B4 -4 288 2 2 971 683 244 0 29 chr3 50698201 50698340 -108901443 + RSINE1 SINE B4 3 137 -28 2 971 526 194 78 0 chr3 50698426 50698529 -108901254 - B1_Mur1 SINE Alu 0 149 39 2 971 666 58 0 0 chr3 50698570 50698657 -108901126 + (GGA)n Simple_repeat Simple_repeat 2 88 0 2 971 2019 194 132 25 chr3 50699289 50699766 -108900017 + MT2A LTR ERVL 6 533 0 2 971 288 200 91 0 chr3 50699780 50699835 -108899948 - MT2A LTR ERVL -249 284 225 2 971 290 297 0 0 chr3 50699865 50699929 -108899854 + RSINE1 SINE B4 85 148 -17 2 971 828 95 0 0 chr3 50699938 50700075 -108899708 + (TC)n Simple_repeat Simple_repeat 1 137 0 2 971 396 320 40 114 chr3 50700288 50700489 -108899294 + LTR85c LTR Gypsy? 13 198 -625 2 971 405 301 90 58 chr3 50702576 50702654 -108897129 + ID SINE ID 2 84 -140 2 971 357 306 37 0 chr3 50702654 50702762 -108897021 + PB1D10 SINE Alu 3 114 -3 2 971 352 268 86 43 chr3 50702775 50702892 -108896891 + RSINE1 SINE B4 44 165 0 2 971 438 310 56 14 chr3 50703056 50703200 -108896583 + ID_B1 SINE B4 51 200 -24 2 971 455 293 219 9 chr3 50703198 50703422 -108896361 + B4A SINE B4 6 276 -16 2 971 481 239 35 0 chr3 50704117 50704230 -108895553 + RSINE1 SINE B4 4 120 -45 2 971 252 0 0 0 chr3 50704234 50704262 -108895521 + (CA)n Simple_repeat Simple_repeat 1 28 0 2 971 850 251 101 0 chr3 50704800 50705007 -108894776 + ORR1E LTR MaLR 1 228 -131 2 971 263 313 57 57 chr3 50705382 50705504 -108894279 - MIRb SINE MIR -32 236 115 2 971 335 261 244 0 chr3 50706044 50706159 -108893624 + MTEa LTR MaLR 1 143 -236 2 971 399 262 78 26 chr3 50706084 50706295 -108893488 + MT2A LTR ERVL 374 584 0 2 971 345 197 0 84 chr3 50707342 50707425 -108892358 - HAL1-3A_ME LINE L1 -808 2050 1975 2 971 273 197 0 0 chr3 50707431 50707492 -108892291 + (TG)n Simple_repeat Simple_repeat 1 61 0 2 971 408 257 238 6 chr3 50707492 50707664 -108892119 - B4 SINE B4 0 292 81 2 971 213 39 0 0 chr3 50708207 50708233 -108891550 + (CA)n Simple_repeat Simple_repeat 1 26 0 2 971 279 0 0 0 chr3 50708233 50708263 -108891520 + (GA)n Simple_repeat Simple_repeat 2 32 0 2 971 618 278 65 27 chr3 50708301 50708486 -108891297 - MER3 DNA MER1_type -3 206 15 2 971 191 234 43 0 chr3 50709328 50709375 -108890408 - MIRm SINE MIR 0 276 228 2 971 349 306 54 13 chr3 50710725 50710874 -108888909 + MER5A DNA MER1_type 35 189 0 2 971 800 92 8 0 chr3 50710974 50711093 -108888690 + (GA)n Simple_repeat Simple_repeat 1 120 0 2 971 218 292 11 43 chr3 50711392 50711485 -108888298 + GA-rich Low_complexity Low_complexity 3 92 0 2 971 373 145 0 26 chr3 50711485 50711563 -108888220 + G-rich Low_complexity Low_complexity 1 76 0 2 971 222 37 0 0 chr3 50712037 50712064 -108887719 + (TTG)n Simple_repeat Simple_repeat 2 28 0 2 971 284 0 28 0 chr3 50712386 50712422 -108887361 + (CAAAAA)n Simple_repeat Simple_repeat 2 38 0 2 971 396 289 108 67 chr3 50712531 50712828 -108886955 + MLT1D LTR MaLR 21 329 -176 2 971 439 257 75 14 chr3 50712910 50713084 -108886699 - B3A SINE B2 -4 191 2 2 971 626 185 19 0 chr3 50714016 50714124 -108885659 + B1_Mur3 SINE Alu 3 112 -37 2 971 421 238 109 63 chr3 50714156 50714223 -108885560 - B4 SINE B4 -105 187 122 2 971 396 0 0 0 chr3 50714223 50714267 -108885516 + (CA)n Simple_repeat Simple_repeat 2 45 0 2 971 421 238 109 63 chr3 50714267 50714374 -108885409 - B4 SINE B4 -171 121 5 2 971 4765 47 0 2 chr3 50714568 50715144 -108884639 + L1Md_F2 LINE L1 6007 6581 -1 2 971 293 253 131 60 chr3 50716609 50716777 -108883006 - MIRc SINE MIR -53 215 36 2 971 848 131 6 0 chr3 50717317 50717492 -108882291 + (TG)n Simple_repeat Simple_repeat 2 177 0 2 971 707 167 19 7 chr3 50717513 50717827 -108881956 + (TG)n Simple_repeat Simple_repeat 1 318 0 2 971 280 220 8 8 chr3 50717841 50717960 -108881823 + (TG)n Simple_repeat Simple_repeat 2 120 0 2 971 949 223 86 103 chr3 50717961 50718251 -108881532 - B4 SINE B4 0 292 8 2 971 887 0 10 0 chr3 50719482 50719585 -108880198 + (CTG)n Simple_repeat Simple_repeat 3 106 0 2 971 798 109 0 0 chr3 50719586 50719705 -108880078 + (TTC)n Simple_repeat Simple_repeat 1 119 0 2 971 219 69 0 0 chr3 50719895 50719924 -108879859 + (CAGA)n Simple_repeat Simple_repeat 2 30 0 2 971 495 0 0 0 chr3 50719929 50719984 -108879799 + (GA)n Simple_repeat Simple_repeat 2 56 0 2 971 657 0 0 0 chr3 50721521 50721594 -108878189 + (TAAA)n Simple_repeat Simple_repeat 1 73 0 2 971 189 0 0 0 chr3 50721809 50721830 -108877953 + (TTTG)n Simple_repeat Simple_repeat 4 24 0 2 971 220 314 36 62 chr3 50721853 50721965 -108877818 + MIRm SINE MIR 168 276 0 2 971 288 0 0 0 chr3 50722108 50722140 -108877643 + (TG)n Simple_repeat Simple_repeat 1 32 0 2 971 397 349 33 49 chr3 50722168 50722412 -108877371 - MIRb SINE MIR -1 267 28 2 971 1167 224 86 21 chr3 50722665 50722956 -108876827 - MTD LTR MaLR 0 419 110 2 971 952 89 22 0 chr3 50722990 50723125 -108876658 + B1_Mus1 SINE Alu 7 144 -4 2 971 369 229 56 106 chr3 50722993 50723154 -108876629 + B4A SINE B4 94 246 -46 2 971 307 214 29 0 chr3 50723170 50723240 -108876543 - MTD LTR MaLR -349 72 1 2 971 774 294 92 10 chr3 50723240 50723535 -108876248 + MLT1A0 LTR MaLR 24 342 -23 2 971 246 260 5 14 chr3 50723734 50723824 -108875959 + BC1_Mm scRNA scRNA 5 95 -57 2 972 902 291 99 82 chr3 50725491 50725683 -108874100 - MLT1D LTR MaLR 0 505 329 2 972 1044 66 0 0 chr3 50725683 50725820 -108873963 + (TTCTC)n Simple_repeat Simple_repeat 3 139 0 2 972 902 291 99 82 chr3 50725820 50726102 -108873681 - MLT1D LTR MaLR -177 328 23 2 972 260 27 27 0 chr3 50727051 50727088 -108872695 + (TTG)n Simple_repeat Simple_repeat 2 39 0 2 972 299 320 0 39 chr3 50727811 50727941 -108871842 + CT-rich Low_complexity Low_complexity 6 130 0 2 972 231 258 48 0 chr3 50728647 50728709 -108871074 + L1M5 LINE L1 5603 5667 -457 2 972 1374 296 39 27 chr3 50728851 50729362 -108870421 + LTR82A LTR ERVL 12 528 -344 2 972 307 308 0 0 chr3 50729614 50729692 -108870091 + MTE2a LTR MaLR 43 120 -259 2 972 581 204 191 0 chr3 50729718 50729870 -108869913 + MTE2a LTR MaLR 199 379 0 2 972 185 0 40 0 chr3 50732193 50732218 -108867565 + (TTG)n Simple_repeat Simple_repeat 2 27 0 2 972 1103 235 55 4 chr3 50732922 50733193 -108866590 + ORR1C1 LTR MaLR 13 297 -81 2 972 1166 73 0 6 chr3 50733193 50733334 -108866449 + B2_Mm2 SINE B2 1 164 -31 2 972 429 223 18 9 chr3 50733334 50733358 -108866425 + ORR1C1 LTR MaLR 265 287 -91 2 972 558 0 0 0 chr3 50733358 50733420 -108866363 + (TAGA)n Simple_repeat Simple_repeat 4 65 0 2 972 429 223 18 9 chr3 50733420 50733508 -108866275 + ORR1C1 LTR MaLR 288 377 -1 2 972 328 366 94 44 chr3 50734377 50734740 -108865043 + LTR33 LTR ERVL 135 515 0 2 972 254 241 0 0 chr3 50734982 50735036 -108864747 - ID SINE ID -167 57 4 2 972 282 328 84 46 chr3 50735254 50735599 -108864184 - ORR1D2 LTR MaLR 0 379 8 2 972 739 145 168 56 chr3 50735614 50735811 -108863972 - URR1A DNA MER1_type 0 226 8 2 972 474 245 40 7 chr3 50738303 50738427 -108861356 - ORR1D2 LTR MaLR -2 368 240 2 972 783 94 0 0 chr3 50738427 50738533 -108861250 + B2_Mm2 SINE B2 1 106 -89 2 972 207 0 0 0 chr3 50738533 50738556 -108861227 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2 972 575 270 167 33 chr3 50738628 50738873 -108860910 - ORR1D2 LTR MaLR -88 282 5 2 972 855 269 109 55 chr3 50739129 50739514 -108860269 - MLT1D LTR MaLR -15 490 85 2 972 576 0 0 0 chr3 50740025 50740089 -108859694 + (TC)n Simple_repeat Simple_repeat 1 64 0 2 972 297 0 0 0 chr3 50740089 50740121 -108859662 + (CA)n Simple_repeat Simple_repeat 1 33 0 2 972 252 353 23 105 chr3 50741635 50741806 -108857977 + MER21B LTR ERV1 14 170 -693 2 972 386 38 0 19 chr3 50742583 50742636 -108857147 + (TTTTG)n Simple_repeat Simple_repeat 5 56 0 2 972 272 258 161 0 chr3 50742649 50742742 -108857041 - PB1D10 SINE Alu -8 109 2 2 972 387 0 0 0 chr3 50742747 50742790 -108856993 + (TTG)n Simple_repeat Simple_repeat 2 44 0 2 972 256 114 388 12 chr3 50743070 50743150 -108856633 - B1F2 SINE Alu 0 149 40 2 972 21 36 0 0 chr3 50744235 50744263 -108855520 + GC_rich Low_complexity Low_complexity 1 28 0 3 972 255 346 73 95 chr3 50746153 50746565 -108853218 - MLT2B3 LTR ERVL 0 554 152 3 972 243 323 15 75 chr3 50746464 50746598 -108853185 - MTEa LTR MaLR -165 214 89 3 972 3094 146 81 19 chr3 50746910 50747441 -108852342 - RLTR12A LTR ERVK -4 564 1 3 972 258 243 14 32 chr3 50747557 50747640 -108852143 + MTE2a LTR MaLR 289 396 -12 3 972 1099 92 31 6 chr3 50748783 50749135 -108850648 + (TG)n Simple_repeat Simple_repeat 1 361 0 3 972 834 102 22 28 chr3 50749167 50749348 -108850435 + (TG)n Simple_repeat Simple_repeat 1 180 0 3 972 612 262 101 20 chr3 50749448 50749460 -108850323 - B4 SINE B4 -69 223 215 3 972 738 0 0 0 chr3 50749460 50749542 -108850241 + (GTTTG)n Simple_repeat Simple_repeat 2 83 0 3 972 612 262 101 20 chr3 50749542 50749728 -108850055 - B4 SINE B4 -78 214 9 3 972 791 46 0 9 chr3 50750167 50750276 -108849507 + (TG)n Simple_repeat Simple_repeat 1 108 0 3 972 3996 200 106 18 chr3 50750282 50751011 -108848772 + RMER12 LTR ERVK 1 767 -555 3 972 414 85 0 0 chr3 50751011 50751070 -108848713 + (TCCA)n Simple_repeat Simple_repeat 1 59 0 3 972 3996 200 106 18 chr3 50751070 50751417 -108848366 + RMER12 LTR ERVK 768 1171 -151 3 972 413 214 139 28 chr3 50751409 50751553 -108848230 + RLTR22_Mur LTR ERVK 1689 1848 0 3 972 768 252 77 53 chr3 50751566 50751851 -108847932 - B4A SINE B4 0 292 1 3 972 463 295 136 57 chr3 50752005 50752336 -108847447 + ORR1E LTR MaLR 1 357 -2 3 972 396 0 0 0 chr3 50753249 50753293 -108846490 + (GA)n Simple_repeat Simple_repeat 1 44 0 3 972 313 336 14 51 chr3 50753463 50753601 -108846182 - MER20 DNA MER1_type -85 134 2 3 972 277 296 37 9 chr3 50753779 50753888 -108845895 + PB1D10 SINE Alu 5 116 -1 3 972 2077 260 50 33 chr3 50753944 50754757 -108845026 + Lx5 LINE L1 6455 7033 -17 3 972 28 0 0 0 chr3 50755217 50755245 -108844538 + AT_rich Low_complexity Low_complexity 1 28 0 3 972 1108 76 0 23 chr3 50755580 50755755 -108844028 + (TAGA)n Simple_repeat Simple_repeat 4 174 0 3 972 381 109 0 0 chr3 50755755 50755819 -108843964 + (CATA)n Simple_repeat Simple_repeat 1 64 0 3 972 240 111 0 0 chr3 50757040 50757076 -108842707 + (A)n Simple_repeat Simple_repeat 1 36 0 3 972 796 296 103 22 chr3 50757900 50758211 -108841572 + ORR1E LTR MaLR 5 340 -19 3 972 1397 66 33 0 chr3 50758231 50758412 -108841371 - B2_Mm2 SINE B2 -8 187 1 3 972 318 340 69 6 chr3 50759416 50759576 -108840207 - MLT1A1 LTR MaLR -20 388 219 3 972 304 331 38 0 chr3 50759607 50759740 -108840043 + RMER30 DNA MER1_type 18 155 -47 3 972 268 264 236 16 chr3 50759771 50759898 -108839885 - MLT1A1 LTR MaLR -248 160 6 3 972 207 203 0 17 chr3 50760239 50760249 -108839534 + (CA)n Simple_repeat Simple_repeat 1 10 0 3 972 670 253 19 6 chr3 50760249 50760408 -108839375 + RSINE1 SINE B4 5 165 0 3 972 207 203 0 17 chr3 50760408 50760457 -108839326 + (CA)n Simple_repeat Simple_repeat 1 49 0 3 972 216 67 0 0 chr3 50760494 50760524 -108839259 + (CA)n Simple_repeat Simple_repeat 1 30 0 3 972 375 338 36 46 chr3 50760561 50760865 -108838918 + L1ME4a LINE L1 5552 5852 -272 3 972 453 36 0 0 chr3 50761035 50761090 -108838693 + (TAAAA)n Simple_repeat Simple_repeat 3 57 0 3 972 38991 44 0 3 chr3 50761196 50767703 -108832080 - L1Md_T LINE L1 0 6585 1 3 972 261 83 0 0 chr3 50767729 50767765 -108832018 + (T)n Simple_repeat Simple_repeat 1 36 0 3 972 983 52 0 0 chr3 50767765 50767899 -108831884 - B1_Mus2 SINE Alu 0 147 14 3 972 849 251 52 45 chr3 50768581 50768848 -108830935 + B4A SINE B4 24 292 0 3 972 653 207 142 29 chr3 50770008 50770212 -108829571 + B4A SINE B4 66 292 0 3 972 215 234 0 21 chr3 50770213 50770261 -108829522 + GA-rich Low_complexity Low_complexity 3 49 0 3 972 392 262 15 108 chr3 50771651 50771806 -108827977 - B1F SINE Alu -7 142 1 3 972 345 47 0 0 chr3 50771817 50771860 -108827923 + (TAA)n Simple_repeat Simple_repeat 1 43 0 3 972 251 318 0 0 chr3 50774159 50774225 -108825558 + PB1D10 SINE Alu 50 115 -2 3 972 505 309 170 23 chr3 50774284 50774549 -108825234 + Lx8 LINE L1 6934 7237 -236 3 972 371 367 0 0 chr3 50775938 50776077 -108823706 - RSINE1 SINE B4 -19 146 8 3 972 247 294 109 38 chr3 50776106 50776290 -108823493 - MIRb SINE MIR -34 234 38 3 972 221 0 0 33 chr3 50776380 50776410 -108823373 + (TG)n Simple_repeat Simple_repeat 2 30 0 3 972 260 252 77 75 chr3 50776584 50776722 -108823061 - B4 SINE B4 -153 139 5 3 972 502 0 14 42 chr3 50777676 50777747 -108822036 + (TTG)n Simple_repeat Simple_repeat 2 70 0 3 972 1135 79 0 0 chr3 50777747 50777887 -108821896 - B1_Mus1 SINE Alu -8 140 1 3 972 531 329 30 43 chr3 50778010 50778242 -108821541 + B4A SINE B4 2 230 -62 3 972 450 226 0 10 chr3 50778242 50778344 -108821439 + B3A SINE B2 1 101 -97 3 972 1143 228 15 19 chr3 50778344 50778612 -108821171 - RMER15 LTR ERVL 0 575 309 3 972 809 261 39 91 chr3 50778925 50779233 -108820550 + B4 SINE B4 1 292 0 3 972 366 219 203 0 chr3 50779564 50779687 -108820096 + MLT1A LTR MaLR 227 374 0 3 972 633 123 0 0 chr3 50779863 50779969 -108819814 + (GGGA)n Simple_repeat Simple_repeat 3 108 0 3 972 381 22 0 0 chr3 50780148 50780194 -108819589 + (CA)n Simple_repeat Simple_repeat 1 46 0 3 972 249 272 53 33 chr3 50780710 50780824 -108818959 + MIRc SINE MIR 66 175 -33 3 972 315 0 0 0 chr3 50781305 50781340 -108818443 + (CA)n Simple_repeat Simple_repeat 1 35 0 3 972 976 97 48 14 chr3 50783032 50783161 -108816622 + Lx2 LINE L1 6710 6838 -159 3 972 324 132 0 14 chr3 50783161 50783230 -108816553 + Lx LINE L1 6587 6654 0 3 972 976 97 48 14 chr3 50783230 50783247 -108816536 + Lx2 LINE L1 6839 6861 -136 3 972 753 159 0 0 chr3 50783254 50783417 -108816366 + GA-rich Low_complexity Low_complexity 3 165 0 3 972 471 282 47 47 chr3 50783597 50783787 -108815996 + B3A SINE B2 27 216 0 3 972 595 208 26 65 chr3 50784372 50784526 -108815257 + B1_Mur3 SINE Alu 2 149 0 3 972 236 247 0 12 chr3 50784561 50784647 -108815136 + GA-rich Low_complexity Low_complexity 2 86 0 3 972 383 234 55 121 chr3 50785043 50785208 -108814575 + B3A SINE B2 45 198 0 3 972 215 351 35 78 chr3 50785284 50785426 -108814357 - MIRb SINE MIR -37 231 96 3 972 569 231 46 0 chr3 50786107 50786237 -108813546 - B1F SINE Alu -11 138 3 3 972 366 205 14 2 chr3 50787505 50787591 -108812192 + ID4_ SINE ID 13 98 -54 3 972 300 154 0 0 chr3 50787592 50787644 -108812139 + GA-rich Low_complexity Low_complexity 3 54 0 3 972 225 94 0 0 chr3 50788824 50788856 -108810927 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 3 972 1137 285 21 46 chr3 50790031 50790447 -108809336 + MTE2a LTR MaLR 1 419 0 3 972 223 260 181 34 chr3 50790518 50790678 -108809105 + MIRb SINE MIR 7 191 -77 3 972 732 287 9 9 chr3 50790993 50791204 -108808579 + ID_B1 SINE B4 5 215 -9 3 972 188 35 35 0 chr3 50792046 50792075 -108807708 + (CA)n Simple_repeat Simple_repeat 1 30 0 3 972 1166 82 0 0 chr3 50792667 50792814 -108806969 + B1_Mus1 SINE Alu 2 148 0 3 972 564 178 0 0 chr3 50792819 50792926 -108806857 + GA-rich Low_complexity Low_complexity 2 108 0 3 972 391 353 44 15 chr3 50792936 50793140 -108806643 + MLT1I LTR MaLR 9 218 -193 3 972 546 86 0 0 chr3 50793724 50793805 -108805978 + (TG)n Simple_repeat Simple_repeat 2 82 0 3 972 456 212 146 44 chr3 50793824 50793982 -108805801 - B4 SINE B4 -63 229 56 3 972 207 0 0 0 chr3 50794606 50794629 -108805154 + (G)n Simple_repeat Simple_repeat 1 23 0 3 972 195 42 0 0 chr3 50795049 50795073 -108804710 + (CCCCCA)n Simple_repeat Simple_repeat 3 26 0 3 972 1032 247 35 48 chr3 50795226 50795628 -108804155 - Lx7 LINE L1 -1782 5914 5485 3 972 491 331 27 5 chr3 50796987 50797172 -108802611 + B4 SINE B4 8 196 -96 3 972 450 0 0 0 chr3 50797184 50797234 -108802549 + (TG)n Simple_repeat Simple_repeat 1 50 0 3 972 297 0 0 0 chr3 50797347 50797380 -108802403 + (CA)n Simple_repeat Simple_repeat 1 33 0 3 972 638 293 69 9 chr3 50798698 50798915 -108800868 + B4A SINE B4 1 230 -62 3 972 264 175 0 0 chr3 50798965 50799028 -108800755 + GA-rich Low_complexity Low_complexity 2 64 0 3 972 474 18 0 0 chr3 50799062 50799117 -108800666 + (TG)n Simple_repeat Simple_repeat 2 56 0 3 972 231 258 75 15 chr3 50799175 50799242 -108800541 + 4.5SRNA scRNA scRNA 16 86 -8 3 972 496 237 17 42 chr3 50799186 50799305 -108800478 + B1_Mur1 SINE Alu 34 149 0 3 972 377 281 0 20 chr3 50800666 50800764 -108799019 + B4A SINE B4 1 96 -196 3 972 342 0 0 0 chr3 50800771 50800809 -108798974 + (CA)n Simple_repeat Simple_repeat 2 39 0 3 972 354 267 268 29 chr3 50801043 50801323 -108798460 - MLT1A1 LTR MaLR -34 374 28 3 972 276 297 0 81 chr3 50801391 50801490 -108798293 + RSINE1 SINE B4 75 165 0 3 972 21 0 0 0 chr3 50801507 50801528 -108798255 + AT_rich Low_complexity Low_complexity 1 21 0 3 972 634 277 10 39 chr3 50802178 50802381 -108797402 + B3A SINE B2 1 197 -1 3 972 1256 231 38 84 chr3 50803239 50803632 -108796151 - MTE2a LTR MaLR 0 379 5 3 972 208 286 11 56 chr3 50803802 50803891 -108795892 + MIRb SINE MIR 184 268 0 3 972 200 286 16 0 chr3 50803908 50803971 -108795812 - L2a LINE L2 -3 3423 3360 3 972 4605 103 38 36 chr3 50803974 50804781 -108795002 - RMER17D2 LTR ERVK 0 809 1 3 972 918 262 15 11 chr3 50804915 50805177 -108794606 + MER58B DNA MER1_type 76 338 -3 3 972 338 309 109 29 chr3 50806518 50806728 -108793055 - LTR88b LTR Gypsy? -567 270 44 3 972 186 250 0 20 chr3 50806988 50807037 -108792746 + L4 LINE RTE 1506 1553 -476 4 972 238 204 0 0 chr3 50807797 50807851 -108791932 + (TA)n Simple_repeat Simple_repeat 2 55 0 4 972 371 83 0 16 chr3 50807875 50807936 -108791847 + (TG)n Simple_repeat Simple_repeat 2 61 0 4 972 232 120 40 0 chr3 50809584 50809634 -108790149 + (TAGA)n Simple_repeat Simple_repeat 3 54 0 4 972 809 207 34 19 chr3 50809735 50809942 -108789841 + B4A SINE B4 45 254 -38 4 972 968 255 85 36 chr3 50809930 50809967 -108789816 - MTEa LTR MaLR -30 349 314 4 972 573 15 0 0 chr3 50809967 50810033 -108789750 + (GGGA)n Simple_repeat Simple_repeat 1 66 0 4 972 968 255 85 36 chr3 50810033 50810325 -108789458 - MTEa LTR MaLR -66 313 4 4 972 318 281 33 11 chr3 50810436 50810526 -108789257 + MER91A DNA Tip100 74 165 -31 4 972 258 286 268 0 chr3 50810885 50811053 -108788730 + ID_B1 SINE B4 12 224 0 4 972 456 203 0 0 chr3 50811375 50811387 -108788396 + (CA)n Simple_repeat Simple_repeat 2 13 0 4 972 189 0 0 0 chr3 50811387 50811408 -108788375 + (GA)n Simple_repeat Simple_repeat 2 22 0 4 972 456 203 0 0 chr3 50811408 50811543 -108788240 + (CA)n Simple_repeat Simple_repeat 2 136 0 4 972 560 204 6 0 chr3 50811563 50811739 -108788044 + (CA)n Simple_repeat Simple_repeat 2 178 0 4 972 2782 29 0 0 chr3 50811807 50812158 -108787625 + MT-int LTR MaLR 672 1022 -76 4 972 2356 14 0 0 chr3 50812157 50812446 -108787337 - MT2_Mm LTR ERVL -204 289 1 4 972 309 26 0 0 chr3 50812446 50812484 -108787299 - MERVL-int LTR ERVL 0 5485 5448 4 972 311 118 28 56 chr3 50812484 50812556 -108787227 - ORR1A3-int LTR MaLR -1323 640 571 4 972 1042 38 8 0 chr3 50812556 50812687 -108787096 - MERVL-int LTR ERVL -111 5374 5243 4 972 357 215 12 12 chr3 50812692 50812772 -108787011 - PB1D9 SINE Alu -40 80 1 4 972 591 290 32 5 chr3 50812781 50812968 -108786815 - L1M3 LINE L1 -362 5821 5630 4 972 198 350 68 29 chr3 50813149 50813252 -108786531 + L2c LINE L2 3281 3387 0 4 972 4379 173 117 8 chr3 50813620 50814393 -108785390 + RLTR25B LTR ERVK 1 817 -211 4 972 357 24 0 0 chr3 50814393 50814435 -108785348 + (GA)n Simple_repeat Simple_repeat 2 43 0 4 972 4379 173 117 8 chr3 50814435 50814587 -108785196 + RLTR25B LTR ERVK 818 1026 -2 4 972 363 149 0 0 chr3 50814639 50814713 -108785070 + (TA)n Simple_repeat Simple_repeat 2 75 0 4 972 429 286 14 28 chr3 50814903 50815047 -108784736 + B3A SINE B2 57 198 0 4 972 896 9 19 0 chr3 50815644 50815752 -108784031 + (TCTCCC)n Simple_repeat Simple_repeat 5 114 0 4 972 572 283 12 59 chr3 50815883 50816011 -108783772 - RSINE1 SINE B4 -3 162 43 4 972 3519 77 108 21 chr3 50816011 50816530 -108783253 + LTRIS2 LTR ERV1 1 564 0 4 972 572 283 12 59 chr3 50816530 50816570 -108783213 - RSINE1 SINE B4 -123 42 2 4 972 268 231 38 13 chr3 50817847 50817926 -108781857 + B4A SINE B4 9 89 -203 4 972 542 283 7 14 chr3 50818058 50818198 -108781585 + B4A SINE B4 83 221 -71 4 972 216 149 0 0 chr3 50818200 50818247 -108781536 + (TAA)n Simple_repeat Simple_repeat 3 49 0 4 972 2025 241 42 31 chr3 50818325 50818721 -108781062 + Lx6 LINE L1 6968 7352 -108 4 972 720 54 0 0 chr3 50818721 50818814 -108780969 + (GGGGA)n Simple_repeat Simple_repeat 4 96 0 4 972 2025 241 42 31 chr3 50818814 50818896 -108780887 + Lx6 LINE L1 7353 7450 -10 4 972 194 150 25 0 chr3 50820266 50820306 -108779477 + (TTG)n Simple_repeat Simple_repeat 2 42 0 4 972 540 45 0 0 chr3 50820324 50820391 -108779392 + (TTGG)n Simple_repeat Simple_repeat 1 67 0 4 972 542 168 150 8 chr3 50820395 50820515 -108779268 - B1_Mur3 SINE Alu 0 149 13 4 972 234 272 114 87 chr3 50820515 50820537 -108779246 - ID_B1 SINE B4 0 224 79 4 972 4159 154 63 70 chr3 50820537 50821398 -108778385 + RMER19B LTR ERVK 1 855 -47 4 972 849 264 67 29 chr3 50821640 50821984 -108777799 - Charlie1b DNA MER1_type -130 393 37 4 972 633 38 0 0 chr3 50822329 50822409 -108777374 + (CA)n Simple_repeat Simple_repeat 2 81 0 4 972 313 229 206 7 chr3 50822970 50823017 -108776766 + HAL1 LINE L1 1404 1461 -1046 4 972 246 81 0 0 chr3 50823017 50823054 -108776729 + (TAAA)n Simple_repeat Simple_repeat 2 38 0 4 972 313 229 206 7 chr3 50823054 50823147 -108776636 + HAL1 LINE L1 1462 1571 -936 4 972 478 264 75 27 chr3 50823259 50823446 -108776337 + ID_B1 SINE B4 3 198 -26 4 972 239 299 0 29 chr3 50823452 50823521 -108776262 + G-rich Low_complexity Low_complexity 3 69 0 4 972 507 308 19 5 chr3 50823532 50823741 -108776042 + MLT1F1 LTR MaLR 354 565 -4 4 972 235 266 96 59 chr3 50823977 50824113 -108775670 + HAL1 LINE L1 2014 2154 -353 4 972 760 271 38 13 chr3 50824248 50824408 -108775375 - B4A SINE B4 0 292 128 4 972 1440 46 0 0 chr3 50824408 50824671 -108775112 + (CCA)n Simple_repeat Simple_repeat 1 263 0 4 972 760 276 42 31 chr3 50824671 50824798 -108774985 - B4A SINE B4 -165 127 8 4 972 795 248 206 6 chr3 50825262 50825578 -108774205 + MTEa LTR MaLR 1 379 0 4 972 24 0 0 0 chr3 50825614 50825638 -108774145 + AT_rich Low_complexity Low_complexity 1 24 0 4 972 802 327 6 41 chr3 50826994 50827335 -108772448 + MTEb LTR MaLR 51 379 0 4 972 407 184 0 65 chr3 50827335 50827424 -108772359 - ID_B1 SINE B4 -20 204 122 4 972 205 228 52 17 chr3 50827701 50827759 -108772024 - L2a LINE L2 -16 3410 3351 4 972 248 326 139 15 chr3 50828009 50828146 -108771637 - MLT1G3 LTR MaLR -196 399 246 4 972 288 226 21 12 chr3 50828327 50828412 -108771371 + PB1D10 SINE Alu 5 88 -61 4 972 294 386 63 12 chr3 50828557 50828809 -108770974 - L2a LINE L2 -178 3248 2984 4 972 197 339 17 67 chr3 50829003 50829123 -108770660 - L2a LINE L2 -541 2878 2765 4 972 618 264 7 0 chr3 50829602 50829746 -108770037 - L1M2 LINE L1 -664 5648 5504 4 972 284 234 29 44 chr3 50829747 50829861 -108769922 + L1_Mur3 LINE L1 4015 4136 -1750 4 972 1820 128 27 46 chr3 50829863 50830231 -108769552 + ORR1B2 LTR MaLR 7 367 0 4 972 1362 286 46 31 chr3 50830448 50831084 -108768699 + L1M2 LINE L1 4204 4848 -1295 4 972 1225 247 35 7 chr3 50832040 50832350 -108767433 - MTE2a LTR MaLR -1 378 60 4 972 302 235 118 0 chr3 50832355 50832440 -108767343 - MTE2a LTR MaLR -284 95 1 4 972 227 242 0 46 chr3 50834936 50835001 -108764782 + GA-rich Low_complexity Low_complexity 3 64 0 4 972 586 277 51 46 chr3 50835951 50836148 -108763635 + ID_B1 SINE B4 7 204 -20 4 972 964 59 15 0 chr3 50836156 50836292 -108763491 + (GGGA)n Simple_repeat Simple_repeat 1 138 0 4 972 618 14 0 0 chr3 50836292 50836363 -108763420 + (GAAA)n Simple_repeat Simple_repeat 4 74 0 4 972 209 59 59 0 chr3 50836372 50836406 -108763377 + (GGGA)n Simple_repeat Simple_repeat 2 37 0 4 972 203 242 66 68 chr3 50837789 50837903 -108761880 - L2a LINE L2 0 3426 3285 4 972 730 309 91 19 chr3 50838385 50838705 -108761078 - MTEa LTR MaLR -1 378 36 4 972 27 0 0 0 chr3 50838769 50838796 -108760987 + AT_rich Low_complexity Low_complexity 1 27 0 4 972 531 259 7 15 chr3 50839026 50839163 -108760620 + RSINE1 SINE B4 5 140 -25 4 972 411 119 0 0 chr3 50839164 50839231 -108760552 + (CA)n Simple_repeat Simple_repeat 1 67 0 4 972 3189 39 5 8 chr3 50839974 50840365 -108759418 + L1Md_F2 LINE L1 6193 6582 0 4 972 24 0 0 0 chr3 50841564 50841588 -108758195 + AT_rich Low_complexity Low_complexity 1 24 0 4 972 1050 55 0 0 chr3 50841849 50841995 -108757788 + (TC)n Simple_repeat Simple_repeat 2 147 0 4 972 541 38 0 24 chr3 50842045 50842127 -108757656 + (TG)n Simple_repeat Simple_repeat 1 80 0 4 972 280 291 12 12 chr3 50842151 50842231 -108757552 - ID SINE ID -142 82 3 4 972 244 345 84 7 chr3 50842253 50842396 -108757387 + MER103 DNA DNA 1 154 -12 4 972 631 311 26 0 chr3 50842603 50842796 -108756987 + ID_B1 SINE B4 1 198 -26 4 972 4777 156 39 36 chr3 50842914 50843837 -108755946 - Lx4B LINE L1 -541 6517 5592 4 972 4431 114 51 20 chr3 50843819 50843965 -108755818 + L1_Mur2 LINE L1 4879 5018 -859 4 972 1354 75 26 16 chr3 50843965 50844127 -108755656 + B2_Mm1a SINE B2 1 160 -33 4 972 207 0 0 0 chr3 50844127 50844150 -108755633 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 4 972 1354 75 26 16 chr3 50844150 50844177 -108755606 + B2_Mm1a SINE B2 161 192 -1 4 972 4431 114 51 20 chr3 50844177 50844736 -108755047 + L1_Mur2 LINE L1 5019 5606 -271 4 972 271 329 0 0 chr3 50847065 50847138 -108752645 + (CGTG)n Simple_repeat Simple_repeat 4 76 0 4 972 396 294 34 27 chr3 50847150 50847297 -108752486 - RSINE1 SINE B4 -15 150 3 4 972 946 250 0 31 chr3 50847688 50847848 -108751935 + B3 SINE B2 1 160 -56 4 972 546 16 0 0 chr3 50847848 50847911 -108751872 + (TAGA)n Simple_repeat Simple_repeat 3 65 0 4 972 946 250 0 31 chr3 50847911 50847973 -108751810 + B3 SINE B2 161 216 0 4 972 359 258 0 0 chr3 50848950 50849039 -108750744 - RSINE1 SINE B4 -73 92 4 4 972 263 268 53 45 chr3 50850187 50850320 -108749463 - MIRb SINE MIR -84 184 51 4 972 369 0 0 0 chr3 50850333 50850374 -108749409 + (TG)n Simple_repeat Simple_repeat 1 41 0 4 972 739 293 14 62 chr3 50850378 50850666 -108749117 - B4 SINE B4 -14 278 5 4 972 214 167 0 0 chr3 50852209 50852245 -108747538 + (CA)n Simple_repeat Simple_repeat 1 36 0 4 972 191 337 21 63 chr3 50852827 50852922 -108746861 - L2b LINE L2 -1 3374 3284 4 972 235 206 91 71 chr3 50853221 50853320 -108746463 + MLT1A1 LTR MaLR 24 124 -284 4 972 531 0 0 0 chr3 50853360 50853419 -108746364 + (TC)n Simple_repeat Simple_repeat 1 59 0 4 972 303 252 46 46 chr3 50853426 50853534 -108746249 + MLT1A1 LTR MaLR 299 406 -2 4 972 726 239 33 33 chr3 50854153 50854335 -108745448 + B3 SINE B2 1 182 -34 4 972 490 263 50 15 chr3 50854657 50854858 -108744925 + L1MB8 LINE L1 5773 5980 -198 4 972 254 309 40 20 chr3 50854964 50855063 -108744720 + MLT1A1 LTR MaLR 13 113 -261 4 972 322 304 29 7 chr3 50855194 50855330 -108744453 + B1F SINE Alu 6 144 -5 4 972 214 312 26 13 chr3 50855343 50855421 -108744362 + ID4 SINE ID 4 82 -1 4 972 198 0 0 0 chr3 50855425 50855447 -108744336 + (A)n Simple_repeat Simple_repeat 1 22 0 4 972 271 261 0 0 chr3 50855457 50855522 -108744261 + MLT1A1 LTR MaLR 283 347 -61 4 972 284 260 0 14 chr3 50855566 50855640 -108744143 + L1MB8 LINE L1 6099 6171 -7 4 973 401 254 46 38 chr3 50856815 50856946 -108742837 + B1_Mus2 SINE Alu 11 142 -5 4 973 353 276 63 63 chr3 50856997 50857059 -108742724 + L1M5 LINE L1 5265 5330 -794 4 973 464 205 213 0 chr3 50857059 50857181 -108742602 + B1F SINE Alu 2 149 0 4 973 353 276 63 63 chr3 50857181 50857323 -108742460 + L1M5 LINE L1 5331 5469 -655 4 973 23 0 0 0 chr3 50857615 50857638 -108742145 + AT_rich Low_complexity Low_complexity 1 23 0 4 973 347 265 69 0 chr3 50857823 50857925 -108741858 + PB1D9 SINE Alu 3 111 -9 4 973 341 257 0 0 chr3 50858298 50858368 -108741415 + ID4_ SINE ID 5 74 -9 5 973 1052 350 65 53 chr3 50859682 50860261 -108739522 + Lx8 LINE L1 6727 7338 -135 5 973 1625 170 113 15 chr3 50860261 50860596 -108739187 - ORR1D1 LTR MaLR -4 370 3 5 973 1052 350 65 53 chr3 50860596 50860752 -108739031 + Lx8 LINE L1 7339 7471 -2 5 973 1163 262 183 0 chr3 50861112 50861554 -108738229 + MLT1F LTR MaLR 1 523 -25 5 973 896 269 25 56 chr3 50864305 50864663 -108735120 - MT2A LTR ERVL -98 435 89 5 973 307 267 186 61 chr3 50864481 50864728 -108735055 - MTE2a LTR MaLR -97 282 5 5 973 321 82 0 0 chr3 50867491 50867540 -108732243 + (TCTG)n Simple_repeat Simple_repeat 2 50 0 5 973 565 299 109 46 chr3 50868357 50868750 -108731033 + L1MC4 LINE L1 7623 8040 -2 5 973 332 200 10 0 chr3 50868956 50869056 -108730727 + (TG)n Simple_repeat Simple_repeat 2 102 0 5 973 759 286 88 32 chr3 50869128 50869377 -108730406 - B4A SINE B4 -3 289 27 5 973 447 178 228 0 chr3 50869382 50869483 -108730300 - B1_Mus1 SINE Alu 0 148 25 5 973 293 279 52 35 chr3 50870407 50870522 -108729261 + MER5A1 DNA MER1_type 50 166 0 5 973 668 338 3 28 chr3 50870563 50870846 -108728937 + L1MA8 LINE L1 5596 5871 -420 5 973 599 265 62 62 chr3 50871030 50871223 -108728560 - B3A SINE B2 -5 193 1 5 973 1952 290 68 61 chr3 50871244 50872859 -108726924 - L1MA5 LINE L1 -3 6297 4652 5 973 374 205 92 25 chr3 50872859 50872979 -108726804 + L1MA8 LINE L1 6101 6228 -63 5 973 561 286 51 20 chr3 50873015 50873211 -108726572 + L1M2 LINE L1 5616 5817 -483 5 973 485 99 12 0 chr3 50873227 50873308 -108726475 + (TA)n Simple_repeat Simple_repeat 2 83 0 5 973 634 254 119 44 chr3 50873936 50874187 -108725596 + B4A SINE B4 13 282 -10 5 973 220 182 0 57 chr3 50874195 50874265 -108725518 + (CATATA)n Simple_repeat Simple_repeat 1 66 0 5 973 240 276 50 30 chr3 50874515 50874616 -108725167 - MLT1D LTR MaLR -16 489 387 5 973 432 0 0 0 chr3 50876710 50876758 -108723025 + (TG)n Simple_repeat Simple_repeat 2 49 0 5 973 353 230 10 0 chr3 50876783 50876883 -108722900 + (TA)n Simple_repeat Simple_repeat 1 101 0 5 973 218 136 0 22 chr3 50877199 50877244 -108722539 + CT-rich Low_complexity Low_complexity 2 45 0 5 973 540 0 0 0 chr3 50877697 50877757 -108722026 + (TC)n Simple_repeat Simple_repeat 2 61 0 5 973 610 291 25 25 chr3 50877762 50877966 -108721817 - B4 SINE B4 -83 209 6 5 973 180 0 0 0 chr3 50878082 50878102 -108721681 + (CA)n Simple_repeat Simple_repeat 1 20 0 5 973 468 0 0 0 chr3 50878102 50878153 -108721630 + (GA)n Simple_repeat Simple_repeat 2 53 0 5 973 254 329 50 7 chr3 50878825 50878966 -108720817 + MER5A1 DNA MER1_type 11 157 -9 5 973 258 105 0 0 chr3 50879842 50879880 -108719903 + (TCTG)n Simple_repeat Simple_repeat 1 38 0 5 973 271 340 19 45 chr3 50880155 50880309 -108719474 + Charlie4z DNA MER1_type 16 165 -2 5 973 271 247 79 45 chr3 50880329 50880393 -108719390 + PB1D9 SINE Alu 26 96 -24 5 973 634 256 15 0 chr3 50880393 50880526 -108719257 + B1_Mur1 SINE Alu 2 136 -13 5 973 1933 90 4 7 chr3 50880526 50880807 -108718976 - Lx LINE L1 -2 6652 6373 5 973 271 247 79 45 chr3 50880807 50880830 -108718953 + PB1D9 SINE Alu 97 116 -4 5 973 1075 196 5 15 chr3 50880834 50881031 -108718752 + B3 SINE B2 7 201 -15 5 973 441 0 0 0 chr3 50881031 50881080 -108718703 + (TTAAA)n Simple_repeat Simple_repeat 2 50 0 5 973 218 278 153 0 chr3 50881082 50881154 -108718629 + ID4_ SINE ID 1 83 0 5 973 1010 274 86 19 chr3 50881264 50881685 -108718098 - RMER5 LTR ERV1 -10 524 76 5 973 936 27 0 0 chr3 50883170 50883281 -108716502 + (TC)n Simple_repeat Simple_repeat 1 111 0 5 973 321 68 0 0 chr3 50883953 50883997 -108715786 + (CGTG)n Simple_repeat Simple_repeat 4 47 0 5 973 782 212 54 54 chr3 50884036 50884260 -108715523 - ID_B1 SINE B4 0 224 1 5 973 504 0 0 0 chr3 50884271 50884327 -108715456 + (TG)n Simple_repeat Simple_repeat 2 57 0 5 973 299 289 53 0 chr3 50884364 50884440 -108715343 - B1F SINE Alu -57 92 13 5 973 289 349 76 0 chr3 50884461 50884593 -108715190 - B4A SINE B4 -136 156 15 5 973 513 325 60 5 chr3 50884845 50885046 -108714737 - MIR SINE MIR -29 233 22 5 973 293 196 0 0 chr3 50885134 50885185 -108714598 + RSINE1 SINE B4 47 97 -68 5 973 1165 75 0 0 chr3 50885491 50885637 -108714146 - B1_Mus1 SINE Alu -1 147 2 5 973 396 290 129 0 chr3 50886634 50886758 -108713025 - B1F SINE Alu -8 141 2 5 973 233 347 0 0 chr3 50886764 50886836 -108712947 + GA-rich Low_complexity Low_complexity 1 72 0 5 973 369 0 0 0 chr3 50887580 50887621 -108712162 + (GA)n Simple_repeat Simple_repeat 2 42 0 5 973 218 32 32 0 chr3 50887629 50887660 -108712123 + (CA)n Simple_repeat Simple_repeat 1 32 0 5 973 496 320 0 52 chr3 50888334 50888489 -108711294 + B3A SINE B2 2 148 -50 5 973 835 251 40 90 chr3 50888600 50888976 -108710807 + ORR1E LTR MaLR 1 357 -2 5 973 427 129 30 8 chr3 50889126 50889259 -108710524 + T-rich Low_complexity Low_complexity 3 138 0 5 973 1002 77 0 0 chr3 50889261 50889391 -108710392 - B1_Mus1 SINE Alu 0 148 19 5 973 442 263 48 83 chr3 50889266 50889411 -108710372 - B4 SINE B4 -71 221 82 5 973 463 254 200 26 chr3 50889653 50889843 -108709940 + B4A SINE B4 1 223 -69 5 973 518 216 20 0 chr3 50890000 50890102 -108709681 + ID_B1 SINE B4 105 208 -16 5 973 336 143 0 0 chr3 50890112 50890168 -108709615 + (ATGGTG)n Simple_repeat Simple_repeat 5 60 0 5 973 29 0 0 0 chr3 50890947 50890976 -108708807 + AT_rich Low_complexity Low_complexity 1 29 0 5 973 2912 81 13 5 chr3 50891785 50892180 -108707603 - L1Md_F2 LINE L1 0 6582 6185 5 973 737 308 24 19 chr3 50892681 50892893 -108706890 + ID_B1 SINE B4 2 214 -10 5 973 555 358 61 36 chr3 50893941 50894219 -108705564 - B4A SINE B4 -6 286 2 5 973 806 265 128 0 chr3 50894309 50894528 -108705255 + B4A SINE B4 46 292 0 5 973 543 155 20 40 chr3 50894598 50894699 -108705084 + B1_Mus2 SINE Alu 34 132 -15 5 973 552 291 27 0 chr3 50894851 50894999 -108704784 + RSINE1 SINE B4 14 165 0 5 973 266 164 0 18 chr3 50895002 50895058 -108704725 + (CATA)n Simple_repeat Simple_repeat 4 58 0 5 973 377 367 145 11 chr3 50895648 50896020 -108703763 + L3 LINE CR1 3549 3970 -519 5 973 304 313 52 9 chr3 50896099 50896215 -108703568 + MIRc SINE MIR 123 243 -25 5 973 545 258 53 8 chr3 50896523 50896656 -108703127 + ID_B1 SINE B4 86 224 0 5 973 521 269 57 13 chr3 50897900 50898058 -108701725 + MER58A DNA MER1_type 48 212 -12 5 973 480 229 38 0 chr3 50898289 50898394 -108701389 + PB1D10 SINE Alu 1 109 -8 5 973 213 272 126 12 chr3 50898502 50898628 -108701155 + MIRb SINE MIR 131 258 -4 5 973 1122 280 21 7 chr3 50899167 50899455 -108700328 - B4A SINE B4 0 292 1 5 973 526 40 115 0 chr3 50900890 50901038 -108698745 + CT-rich Low_complexity Low_complexity 2 166 0 5 973 1178 205 5 0 chr3 50901774 50901796 -108697987 + B3 SINE B2 1 22 -194 5 973 2235 87 0 3 chr3 50901796 50902097 -108697686 + L1_Mus4 LINE L1 6337 6636 0 5 973 1178 205 5 0 chr3 50902097 50902289 -108697494 + B3 SINE B2 23 215 -1 5 973 207 279 44 0 chr3 50902343 50902411 -108697372 + GA-rich Low_complexity Low_complexity 3 73 0 5 973 395 211 184 129 chr3 50902412 50902575 -108697208 + B3A SINE B2 42 213 -3 5 973 626 118 10 0 chr3 50903309 50903411 -108696372 + (GGAA)n Simple_repeat Simple_repeat 4 106 0 5 973 405 125 47 62 chr3 50903399 50903527 -108696256 + GA-rich Low_complexity Low_complexity 4 129 0 5 973 389 256 55 55 chr3 50903694 50903822 -108695961 + B1F SINE Alu 5 132 -17 5 973 3347 39 3 0 chr3 50904975 50905359 -108694424 + IAPEY_LTR LTR ERVK 1 385 0 5 973 2917 157 14 24 chr3 50905359 50906038 -108693745 + IAPEy-int LTR ERVK 1 1058 -6455 5 973 22478 44 3 6 chr3 50906038 50908757 -108691026 + IAPEy-int LTR ERVK 4804 7513 0 5 973 3347 39 3 0 chr3 50908757 50909141 -108690642 + IAPEY_LTR LTR ERVK 1 385 0 5 973 423 0 0 0 chr3 50909163 50909210 -108690573 + (TG)n Simple_repeat Simple_repeat 1 47 0 5 973 605 66 16 47 chr3 50909210 50909337 -108690446 + (CAGAGA)n Simple_repeat Simple_repeat 2 124 0 5 973 660 202 16 0 chr3 50909337 50909461 -108690322 - B1_Mur1 SINE Alu -22 127 2 5 973 499 312 50 39 chr3 50909525 50909705 -108690078 + MER58A DNA MER1_type 9 190 -34 5 973 242 294 42 32 chr3 50909773 50909868 -108689915 - MIRb SINE MIR -42 226 131 5 973 929 142 22 10 chr3 50909955 50910122 -108689661 - ORR1A2 LTR MaLR -185 142 1 5 973 459 0 0 0 chr3 50910270 50910321 -108689462 + (TG)n Simple_repeat Simple_repeat 1 51 0 5 973 252 283 0 0 chr3 50910379 50910432 -108689351 + PB1D10 SINE Alu 59 111 -6 5 973 36 0 0 0 chr3 50910490 50910526 -108689257 + AT_rich Low_complexity Low_complexity 1 36 0 5 973 255 344 30 8 chr3 50910543 50910675 -108689108 + Lx8 LINE L1 6208 6342 -1131 5 973 664 267 156 12 chr3 50910672 50910922 -108688861 + Lx8 LINE L1 6859 7144 -329 5 973 262 254 112 17 chr3 50910930 50911046 -108688737 + Lx8 LINE L1 7345 7471 -2 5 973 678 260 27 27 chr3 50911129 50911315 -108688468 + B4 SINE B4 81 266 -26 5 973 245 278 119 68 chr3 50911320 50911571 -108688212 + L1MA6 LINE L1 5944 6207 -93 5 973 453 272 39 16 chr3 50911581 50911708 -108688075 + RSINE1 SINE B4 36 165 0 5 973 696 153 16 33 chr3 50911738 50911920 -108687863 + (CA)n Simple_repeat Simple_repeat 2 180 0 5 973 559 173 34 11 chr3 50911955 50912130 -108687653 + (CA)n Simple_repeat Simple_repeat 2 180 0 5 973 964 228 16 5 chr3 50912284 50912478 -108687305 + ID_B1 SINE B4 21 216 -8 5 973 225 304 97 42 chr3 50913356 50913500 -108686283 - L2a LINE L2 -11 3415 3264 5 973 263 254 15 0 chr3 50913578 50913645 -108686138 + ID4_ SINE ID 16 83 0 5 973 1758 146 92 47 chr3 50913739 50913910 -108685873 + RMER10B LTR ERVL 1 192 -206 6 973 315 0 0 0 chr3 50913910 50913945 -108685838 + (TC)n Simple_repeat Simple_repeat 2 36 0 6 973 318 26 0 0 chr3 50913945 50913983 -108685800 + (TG)n Simple_repeat Simple_repeat 2 40 0 6 973 1758 146 92 47 chr3 50913983 50914191 -108685592 + RMER10B LTR ERVL 193 397 -1 6 973 621 310 16 39 chr3 50914326 50914546 -108685237 - B3A SINE B2 0 216 1 6 973 317 360 0 0 chr3 50914564 50914664 -108685119 - RMER15 LTR ERVL -105 470 371 6 973 536 292 100 46 chr3 50914932 50915363 -108684420 - L2a LINE L2 -459 2960 2507 5 973 488 257 38 0 chr3 50916594 50916699 -108683084 + ID_B1 SINE B4 95 203 -21 6 973 1245 204 0 14 chr3 50917191 50917410 -108682373 + B3 SINE B2 1 216 0 6 973 250 296 42 0 chr3 50917479 50917550 -108682233 + ID4 SINE ID 3 76 -7 6 973 339 348 17 0 chr3 50918323 50918438 -108681345 + B4A SINE B4 174 290 -2 6 973 199 203 17 17 chr3 50918517 50918577 -108681206 + G-rich Low_complexity Low_complexity 1 60 0 6 973 29 0 0 0 chr3 50918984 50919013 -108680770 + AT_rich Low_complexity Low_complexity 1 29 0 6 973 586 307 12 109 chr3 50919168 50919424 -108680359 - MTEa LTR MaLR -23 356 126 6 973 1190 86 18 6 chr3 50919471 50919635 -108680148 - B2_Mm2 SINE B2 -29 166 1 6 973 581 208 114 8 chr3 50919635 50919756 -108680027 - MTEa LTR MaLR -236 143 9 6 973 435 19 0 0 chr3 50921275 50921327 -108678456 + (GA)n Simple_repeat Simple_repeat 2 53 0 6 973 663 25 0 0 chr3 50922086 50922167 -108677616 + (TG)n Simple_repeat Simple_repeat 2 82 0 6 973 355 262 0 36 chr3 50922208 50922291 -108677492 - RSINE1 SINE B4 -74 91 12 6 973 279 203 51 0 chr3 50922403 50922462 -108677321 + ID4_ SINE ID 18 79 -4 6 973 1013 130 7 0 chr3 50923076 50923222 -108676561 + B1_Mm SINE Alu 1 147 0 6 973 411 254 0 0 chr3 50923222 50923344 -108676439 + GA-rich Low_complexity Low_complexity 2 123 0 6 973 408 269 215 13 chr3 50923346 50923504 -108676279 + B3 SINE B2 7 196 -20 6 973 976 256 36 21 chr3 50924061 50924340 -108675443 + B4A SINE B4 4 286 -6 6 973 185 108 27 0 chr3 50924344 50924381 -108675402 + (CA)n Simple_repeat Simple_repeat 1 38 0 6 973 305 250 197 8 chr3 50924962 50925079 -108674704 + L1MC3 LINE L1 6507 6645 -1140 6 973 566 72 87 16 chr3 50925082 50925209 -108674574 + (CATATA)n Simple_repeat Simple_repeat 1 136 0 6 973 384 301 80 0 chr3 50925261 50925276 -108674507 - ID_B1 SINE B4 0 224 210 6 973 339 85 0 0 chr3 50925276 50925323 -108674460 + (TG)n Simple_repeat Simple_repeat 1 47 0 6 973 384 301 80 0 chr3 50925323 50925420 -108674363 - ID_B1 SINE B4 -15 209 104 6 973 450 0 0 0 chr3 50926371 50926421 -108673362 + (TG)n Simple_repeat Simple_repeat 2 51 0 6 973 242 283 166 31 chr3 50926833 50927026 -108672757 + ORR1E LTR MaLR 42 260 -99 6 973 618 82 0 0 chr3 50927113 50927198 -108672585 + (TTC)n Simple_repeat Simple_repeat 2 86 0 6 973 1097 65 0 28 chr3 50927198 50927340 -108672443 - B1_Mus1 SINE Alu -10 138 1 6 973 212 293 52 61 chr3 50927797 50927938 -108671845 + MIR SINE MIR 113 263 -5 6 973 612 274 12 23 chr3 50928115 50928287 -108671496 + Lx8 LINE L1 6731 6900 -573 6 973 631 65 18 18 chr3 50928304 50928414 -108671369 + (CAGAGA)n Simple_repeat Simple_repeat 4 113 0 6 973 463 240 107 71 chr3 50928557 50928781 -108671002 + Lx8 LINE L1 7240 7471 -2 6 973 273 68 67 27 chr3 50929328 50929403 -108670380 + (TAGA)n Simple_repeat Simple_repeat 4 81 0 6 973 983 64 13 13 chr3 50929450 50929609 -108670174 + (TAGA)n Simple_repeat Simple_repeat 3 161 0 6 973 217 148 44 33 chr3 50929626 50929717 -108670066 + (TAGA)n Simple_repeat Simple_repeat 3 94 0 6 973 664 264 36 45 chr3 50930984 50931206 -108668577 + ID_B1 SINE B4 3 222 -2 6 973 192 111 0 0 chr3 50931362 50931398 -108668385 + (TAAAAA)n Simple_repeat Simple_repeat 1 36 0 6 973 789 142 17 28 chr3 50931766 50931947 -108667836 + C-rich Low_complexity Low_complexity 1 179 0 6 973 290 163 32 21 chr3 50931933 50932027 -108667756 + CT-rich Low_complexity Low_complexity 3 97 0 6 973 517 291 35 76 chr3 50932421 50932592 -108667191 + MTEa LTR MaLR 1 164 -215 6 973 407 258 30 20 chr3 50932589 50932688 -108667095 + MTEa LTR MaLR 276 375 -4 6 973 590 204 258 22 chr3 50932776 50933059 -108666724 + ORR1D1 LTR MaLR 1 352 -7 6 973 1600 242 88 8 chr3 50933640 50934028 -108665755 + MTD LTR MaLR 1 419 0 6 973 303 48 15 73 chr3 50934617 50934685 -108665098 + (TTTG)n Simple_repeat Simple_repeat 2 65 0 6 973 760 284 70 25 chr3 50934923 50935309 -108664474 + MLT1D LTR MaLR 9 501 -4 6 973 289 263 0 0 chr3 50935452 50935509 -108664274 + MTC LTR MaLR 1 57 -302 6 973 1760 183 108 8 chr3 50935487 50935857 -108663926 + MTC LTR MaLR 15 421 0 6 973 494 251 58 48 chr3 50935859 50936047 -108663736 + MTEa LTR MaLR 182 371 -8 6 973 752 245 0 0 chr3 50937373 50937512 -108662271 + ID_B1 SINE B4 84 222 -2 6 973 333 257 292 0 chr3 50937687 50937784 -108661999 - MLT1A LTR MaLR 0 374 245 6 973 915 201 18 0 chr3 50937784 50937953 -108661830 - MTE2b LTR MaLR -2 377 206 6 973 705 224 12 18 chr3 50937957 50938121 -108661662 + RSINE1 SINE B4 2 164 -1 6 973 26 30 0 0 chr3 50938125 50938158 -108661625 + AT_rich Low_complexity Low_complexity 1 33 0 6 973 1059 113 0 0 chr3 50938163 50938304 -108661479 + B1_Mus1 SINE Alu 1 141 -7 6 973 1212 82 0 0 chr3 50938330 50938500 -108661283 + (GGGA)n Simple_repeat Simple_repeat 3 172 0 6 973 502 286 131 0 chr3 50938506 50938674 -108661109 - MTE2b LTR MaLR -189 190 1 6 973 341 286 8 48 chr3 50938891 50939016 -108660767 - MER63D DNA AcHobo -908 153 34 6 973 952 238 18 5 chr3 50939314 50939534 -108660249 + ID_B1 SINE B4 2 224 0 6 973 255 149 311 0 chr3 50940218 50940292 -108659491 - PB1D10 SINE Alu -11 106 10 6 973 624 190 60 8 chr3 50940253 50940370 -108659413 - ID_B1 SINE B4 -96 128 6 6 973 360 326 50 21 chr3 50940694 50940835 -108658948 + RSINE1 SINE B4 4 148 -17 6 973 420 20 0 0 chr3 50940839 50940888 -108658895 + (CA)n Simple_repeat Simple_repeat 2 50 0 6 973 216 0 0 0 chr3 50941668 50941692 -108658091 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 6 973 450 0 0 0 chr3 50942240 50942290 -108657493 + (CA)n Simple_repeat Simple_repeat 2 51 0 6 973 468 252 108 66 chr3 50942297 50942509 -108657274 + ID_B1 SINE B4 3 223 -1 6 973 312 243 189 36 chr3 50942620 50942731 -108657052 - ID_B1 SINE B4 -16 208 81 6 973 1093 211 25 0 chr3 50943174 50943378 -108656405 - B3 SINE B2 0 216 8 6 973 1202 73 0 6 chr3 50943559 50943725 -108656058 + L1Md_F2 LINE L1 6414 6578 -4 6 973 339 279 13 0 chr3 50943746 50943825 -108655958 + PB1D10 SINE Alu 1 80 -37 6 973 464 261 25 16 chr3 50943755 50943876 -108655907 + ID_B1 SINE B4 92 213 -11 6 973 239 299 22 33 chr3 50944128 50944218 -108655565 + L2a LINE L2 3319 3407 -19 6 973 468 0 0 0 chr3 50944337 50944389 -108655394 + (TG)n Simple_repeat Simple_repeat 2 53 0 6 973 433 153 21 59 chr3 50944827 50945014 -108654769 + (TA)n Simple_repeat Simple_repeat 1 180 0 6 973 327 25 0 0 chr3 50945019 50945059 -108654724 + (TAGA)n Simple_repeat Simple_repeat 2 41 0 6 973 687 232 213 24 chr3 50945081 50945255 -108654528 - ORR1E LTR MaLR -5 354 159 6 973 564 42 0 0 chr3 50945255 50945326 -108654457 + (GA)n Simple_repeat Simple_repeat 1 71 0 6 973 687 232 213 24 chr3 50945326 50945447 -108654336 - ORR1E LTR MaLR -201 158 3 6 973 613 257 73 0 chr3 50945596 50945732 -108654051 - RSINE1 SINE B4 -2 163 18 6 973 408 99 0 0 chr3 50946108 50946179 -108653604 + (TG)n Simple_repeat Simple_repeat 2 72 0 6 973 185 369 52 15 chr3 50946644 50946779 -108653004 + MER5A DNA MER1_type 7 146 -43 6 973 294 143 62 31 chr3 50946973 50947038 -108652745 + MT2B LTR ERVL 191 257 -344 6 973 424 125 171 0 chr3 50946985 50947073 -108652710 + B1_Mur3 SINE Alu 47 149 0 6 973 478 209 31 6 chr3 50947096 50947255 -108652528 + GA-rich Low_complexity Low_complexity 1 163 0 6 973 230 284 43 64 chr3 50947328 50947422 -108652361 - MLT1A1 LTR MaLR -24 525 434 6 973 536 240 0 6 chr3 50947523 50947703 -108652080 + (CA)n Simple_repeat Simple_repeat 2 180 0 6 973 363 96 0 0 chr3 50947737 50947789 -108651994 + (TA)n Simple_repeat Simple_repeat 2 53 0 6 973 1610 170 75 20 chr3 50947790 50948178 -108651605 - MT2A LTR ERVL -61 540 1 6 973 435 295 9 0 chr3 50948237 50948342 -108651441 + PB1D10 SINE Alu 12 117 0 6 973 329 272 231 39 chr3 50948402 50948532 -108651251 + ID_B1 SINE B4 3 157 -67 6 973 241 294 88 0 chr3 50948479 50948547 -108651236 + PB1D10 SINE Alu 19 92 -25 6 973 429 252 244 0 chr3 50948540 50948659 -108651124 + RSINE1 SINE B4 12 159 -6 6 973 244 287 10 78 chr3 50948704 50948806 -108650977 + ID_B1 SINE B4 130 224 0 6 973 444 299 0 116 chr3 50948831 50948851 -108650932 + RSINE1 SINE B4 11 28 -137 6 973 2374 95 0 60 chr3 50948851 50949199 -108650584 + ORR1A2 LTR MaLR 1 327 0 6 973 444 299 0 116 chr3 50949199 50949333 -108650450 + RSINE1 SINE B4 29 146 -19 6 973 411 21 0 0 chr3 50949335 50949383 -108650400 + (CAGA)n Simple_repeat Simple_repeat 1 48 0 6 973 357 278 0 11 chr3 50949602 50949693 -108650090 - MLT1A1 LTR MaLR -48 360 271 6 973 238 280 67 120 chr3 50949729 50949879 -108649904 - MLT1A1 LTR MaLR -266 142 1 6 973 1197 186 33 0 chr3 50950120 50950335 -108649448 + ID_B1 SINE B4 1 222 -2 6 973 247 359 53 15 chr3 50950796 50950929 -108648854 + MER5A DNA MER1_type 1 138 -51 6 973 487 144 0 29 chr3 50950944 50951080 -108648703 + (TCTG)n Simple_repeat Simple_repeat 3 134 0 6 973 825 211 38 25 chr3 50951080 50951240 -108648543 - RSINE1 SINE B4 0 165 4 6 973 285 297 0 0 chr3 50951705 50951769 -108648014 + tRNA-Ala-GCY_ tRNA tRNA 1 64 -11 6 973 296 48 24 0 chr3 50951775 50951817 -108647966 + (CA)n Simple_repeat Simple_repeat 1 43 0 6 973 303 322 73 13 chr3 50951854 50952005 -108647778 + RSINE1 SINE B4 4 163 -2 6 973 1154 172 50 20 chr3 50952035 50952237 -108647546 - B3 SINE B2 -8 208 1 6 973 501 32 0 0 chr3 50952249 50952312 -108647471 + (TTGG)n Simple_repeat Simple_repeat 2 64 0 6 973 230 158 0 0 chr3 50952576 50952614 -108647169 - PB1D7 SINE Alu -81 39 2 6 973 378 377 0 40 chr3 50952795 50952947 -108646836 - RSINE1 SINE B4 -4 161 16 6 973 416 236 62 26 chr3 50953118 50953231 -108646552 - Lx8 LINE L1 -1036 6437 6321 7 973 310 232 0 14 chr3 50953425 50953495 -108646288 + ID4_ SINE ID 15 83 0 7 973 243 309 154 37 chr3 50953495 50953613 -108646170 + ID_B1 SINE B4 15 224 0 7 973 733 178 0 16 chr3 50953614 50953797 -108645986 + (TG)n Simple_repeat Simple_repeat 1 180 0 7 973 312 120 0 0 chr3 50953827 50953877 -108645906 + (TG)n Simple_repeat Simple_repeat 1 50 0 7 973 230 0 33 0 chr3 50954375 50954405 -108645378 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 7 973 378 0 0 0 chr3 50954434 50954476 -108645307 + (TG)n Simple_repeat Simple_repeat 2 43 0 7 973 207 100 0 0 chr3 50954476 50954506 -108645277 + (TTG)n Simple_repeat Simple_repeat 3 32 0 7 973 677 232 14 28 chr3 50954511 50954653 -108645130 - B1_Mur1 SINE Alu -8 141 2 7 973 307 353 58 41 chr3 50955037 50955279 -108644504 + MIRb SINE MIR 14 259 -9 7 973 600 236 126 6 chr3 50955362 50955537 -108644246 - MTEb LTR MaLR -3 376 181 7 973 207 0 0 0 chr3 50955556 50955579 -108644204 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 7 973 340 235 0 0 chr3 50955587 50955655 -108644128 - MTEb LTR MaLR -306 73 6 7 973 330 26 0 0 chr3 50955755 50955794 -108643989 + (CA)n Simple_repeat Simple_repeat 1 39 0 7 973 608 239 0 29 chr3 50956516 50956654 -108643129 + RSINE1 SINE B4 31 164 -1 7 973 428 218 28 11 chr3 50956667 50956843 -108642940 + (CA)n Simple_repeat Simple_repeat 2 180 0 7 973 389 204 42 0 chr3 50956886 50957053 -108642730 + (CA)n Simple_repeat Simple_repeat 1 174 0 7 973 22 56 0 0 chr3 50957063 50957099 -108642684 + AT_rich Low_complexity Low_complexity 1 36 0 7 973 230 281 0 17 chr3 50957658 50957716 -108642067 + (TATATG)n Simple_repeat Simple_repeat 4 60 0 7 973 348 152 106 0 chr3 50957871 50957937 -108641846 - HAL1-3A_ME LINE L1 -810 2048 1976 7 973 313 256 96 12 chr3 50957956 50958039 -108641744 - PB1D10 SINE Alu -1 116 27 7 973 612 348 34 94 chr3 50958363 50958832 -108640951 - MT2A LTR ERVL -74 459 19 7 973 189 394 40 0 chr3 50958841 50958940 -108640843 + MIRb SINE MIR 118 220 -48 7 973 612 125 0 0 chr3 50959235 50959331 -108640452 + (TG)n Simple_repeat Simple_repeat 2 97 0 7 973 751 265 76 29 chr3 50959449 50959659 -108640124 - B4A SINE B4 -72 220 1 7 973 432 55 0 0 chr3 50961532 50961587 -108638196 + (TTTC)n Simple_repeat Simple_repeat 3 57 0 7 973 678 181 0 66 chr3 50961589 50961602 -108638181 - B1_Mus1 SINE Alu -21 127 119 7 973 4608 75 5 53 chr3 50961602 50962275 -108637508 - L1_Mus2 LINE L1 0 6566 5927 7 973 678 181 0 66 chr3 50962275 50962397 -108637386 - B1_Mus1 SINE Alu -30 118 1 7 973 225 235 39 0 chr3 50962632 50962683 -108637100 - PB1 SINE Alu -58 69 17 7 973 431 216 153 46 chr3 50962639 50962770 -108637013 - B4A SINE B4 -146 146 2 7 973 207 0 0 0 chr3 50963216 50963239 -108636544 + (A)n Simple_repeat Simple_repeat 1 23 0 7 973 209 218 18 27 chr3 50963333 50963398 -108636385 + L2a LINE L2 3324 3424 -2 7 973 447 259 40 50 chr3 50963848 50964028 -108635755 - MIRb SINE MIR -28 180 3 7 973 459 0 0 0 chr3 50964342 50964393 -108635390 + (TG)n Simple_repeat Simple_repeat 1 51 0 7 973 517 205 89 0 chr3 50964410 50964522 -108635261 - ID_B1 SINE B4 -13 211 90 7 973 6731 113 67 78 chr3 50964727 50966021 -108633762 + ORR1A4-int LTR MaLR 684 1963 0 7 973 2009 121 65 3 chr3 50966021 50966329 -108633454 + ORR1A4 LTR MaLR 1 327 -2 7 973 396 0 0 0 chr3 50966561 50966605 -108633178 + (TA)n Simple_repeat Simple_repeat 2 45 0 7 973 198 0 0 0 chr3 50966692 50966714 -108633069 + (A)n Simple_repeat Simple_repeat 1 22 0 7 973 251 267 127 51 chr3 50966834 50966992 -108632791 + YREP_Mm Unknown Unknown 127 296 -1516 7 973 620 278 0 34 chr3 50966869 50967018 -108632765 - ID_B1 SINE B4 -1 223 80 7 973 939 270 141 55 chr3 50967115 50967650 -108632133 - MLT2B5 LTR ERVL -4 597 1 7 973 505 267 86 7 chr3 50967855 50968006 -108631777 + RSINE1 SINE B4 3 165 0 7 973 1118 95 0 0 chr3 50968755 50968903 -108630880 + B1_Mus1 SINE Alu 1 148 0 7 973 1668 42 0 0 chr3 50968906 50969099 -108630684 + B2_Mm1a SINE B2 1 193 0 7 973 841 197 117 19 chr3 50969100 50969317 -108630466 - MT2A LTR ERVL -186 398 3 7 973 341 282 0 0 chr3 50969318 50969396 -108630387 + RSINE1 SINE B4 29 106 -59 7 973 434 321 110 17 chr3 50969485 50969552 -108630231 - L1MA4 LINE L1 -438 5862 5799 7 973 258 81 0 0 chr3 50969552 50969589 -108630194 + (CA)n Simple_repeat Simple_repeat 2 38 0 7 973 434 321 110 17 chr3 50969589 50969813 -108629970 - L1MA4 LINE L1 -502 5798 5544 7 973 387 299 50 88 chr3 50969834 50970072 -108629711 + MLT1F2-int LTR MaLR 436 664 -707 7 973 259 294 52 67 chr3 50970324 50970459 -108629324 + MLT1F2 LTR MaLR 185 317 -243 7 973 189 0 0 0 chr3 50970672 50970693 -108629090 + (TG)n Simple_repeat Simple_repeat 1 21 0 7 973 342 0 0 0 chr3 50970693 50970730 -108629053 + (GA)n Simple_repeat Simple_repeat 1 38 0 7 973 892 280 53 32 chr3 50970749 50971033 -108628750 - MLT1A-int LTR MaLR -1286 449 160 7 973 272 260 0 0 chr3 50971067 50971132 -108628651 - MLT1A-int LTR MaLR -1669 66 2 7 973 450 0 0 0 chr3 50971151 50971201 -108628582 + (TC)n Simple_repeat Simple_repeat 1 50 0 7 973 486 0 0 0 chr3 50971201 50971254 -108628529 + (CA)n Simple_repeat Simple_repeat 1 54 0 7 973 768 288 0 0 chr3 50971267 50971430 -108628353 + RSINE1 SINE B4 2 164 -1 7 973 582 15 0 0 chr3 50971430 50971497 -108628286 + (GA)n Simple_repeat Simple_repeat 2 68 0 7 973 23 0 0 0 chr3 50971500 50971523 -108628260 + AT_rich Low_complexity Low_complexity 1 23 0 7 973 262 274 47 12 chr3 50971523 50971608 -108628175 - MLT1A LTR MaLR -27 347 260 7 973 2044 133 39 95 chr3 50971666 50972052 -108627731 - ORR1C1 LTR MaLR 0 378 15 7 973 644 165 55 8 chr3 50972052 50972180 -108627603 - ORR1C1-int LTR MaLR 0 1370 1237 7 973 610 197 16 32 chr3 50972279 50972405 -108627378 + B1_Mm SINE Alu 3 126 -21 7 973 241 315 14 14 chr3 50972458 50972532 -108627251 + ID_B1 SINE B4 133 206 -18 7 973 333 257 40 0 chr3 50972498 50972572 -108627211 + B1F SINE Alu 66 142 -7 7 973 569 191 26 9 chr3 50972769 50972885 -108626898 + PB1D9 SINE Alu 1 118 -2 7 973 775 156 8 23 chr3 50972911 50973042 -108626741 + B3 SINE B2 2 130 -86 7 973 249 248 134 79 chr3 50973012 50973139 -108626644 - MLT1A LTR MaLR -274 134 1 7 973 227 291 59 68 chr3 50973044 50973162 -108626621 - RMER19B LTR ERVK -124 778 662 7 973 504 0 0 0 chr3 50975255 50975311 -108624472 + (TAGA)n Simple_repeat Simple_repeat 3 58 0 7 973 575 231 24 36 chr3 50975480 50975512 -108624271 + ID_B1 SINE B4 55 218 -6 7 973 1024 82 0 0 chr3 50975512 50975646 -108624137 + B1_Mm SINE Alu 8 141 -6 7 973 248 28 56 0 chr3 50975648 50975684 -108624099 + (TAAA)n Simple_repeat Simple_repeat 2 39 0 7 973 323 130 39 13 chr3 50975734 50975812 -108623971 + C-rich Low_complexity Low_complexity 4 83 0 7 973 300 292 169 0 chr3 50975812 50975942 -108623841 - HAL1-3A_ME LINE L1 -422 2436 2285 7 973 221 98 98 0 chr3 50975942 50976003 -108623780 + CT-rich Low_complexity Low_complexity 1 67 0 7 973 309 296 60 84 chr3 50976656 50976677 -108623106 + B4 SINE B4 67 178 -114 7 973 654 223 4 0 chr3 50976677 50976815 -108622968 + B1_Mur1 SINE Alu 2 144 -6 7 973 1476 63 21 0 chr3 50977398 50977588 -108622195 + B2_Mm2 SINE B2 2 195 0 7 973 590 258 59 13 chr3 50979161 50979314 -108620469 + RSINE1 SINE B4 4 163 -2 7 973 258 260 40 40 chr3 50979771 50979782 -108620001 + B1F SINE Alu 74 144 0 7 973 307 233 0 0 chr3 50979782 50979842 -108619941 + ID_B1 SINE B4 163 222 -2 7 973 241 302 91 36 chr3 50979935 50980045 -108619738 - PB1D10 SINE Alu -1 116 1 7 973 584 158 117 29 chr3 50980764 50980901 -108618882 + B1_Mur4 SINE Alu 2 150 0 7 973 426 185 12 12 chr3 50981038 50981120 -108618663 + B1_Mur1 SINE Alu 67 148 -1 7 973 251 294 0 105 chr3 50981152 50981247 -108618536 + MT2B2 LTR ERVL 160 244 -340 7 973 470 252 134 0 chr3 50981325 50981444 -108618339 + ID_B1 SINE B4 88 222 -2 7 973 224 219 0 40 chr3 50981455 50981531 -108618252 + (TAAA)n Simple_repeat Simple_repeat 1 73 0 7 973 373 233 11 55 chr3 50981555 50981646 -108618137 + ID_B1 SINE B4 79 165 -59 7 973 892 110 11 34 chr3 50981684 50981862 -108617921 + G-rich Low_complexity Low_complexity 2 175 0 7 973 557 218 0 9 chr3 50982513 50982624 -108617159 + ID_B1 SINE B4 113 222 -2 7 973 867 246 36 18 chr3 50982853 50983072 -108616711 + ID_B1 SINE B4 2 224 0 7 973 1742 232 73 2 chr3 50983085 50983521 -108616262 + Lx8 LINE L1 6442 6908 -565 7 973 1268 253 73 8 chr3 50983654 50984009 -108615774 + Lx8 LINE L1 6873 7250 -223 7 973 746 256 16 42 chr3 50984091 50984283 -108615500 - B3A SINE B2 -11 187 1 7 973 1225 202 217 27 chr3 50984454 50984790 -108614993 + MTD LTR MaLR 6 405 -14 7 973 1271 85 5 41 chr3 50984803 50985000 -108614783 + B2_Mm1a SINE B2 3 192 -1 7 973 210 71 0 0 chr3 50985008 50985036 -108614747 + (GAAA)n Simple_repeat Simple_repeat 2 29 0 7 973 225 245 20 0 chr3 50985159 50985208 -108614575 + B1F SINE Alu 94 143 -6 7 973 322 200 29 44 chr3 50985249 50985317 -108614466 + HAL1-3A_ME LINE L1 1952 2018 -840 7 973 206 280 0 0 chr3 50985323 50985373 -108614410 + (CA)n Simple_repeat Simple_repeat 1 50 0 7 973 681 264 0 0 chr3 50985507 50985655 -108614128 - B1F SINE Alu -1 148 1 7 973 291 272 9 26 chr3 50986180 50986292 -108613491 + B4A SINE B4 2 107 -58 7 973 242 184 0 39 chr3 50986679 50986730 -108613053 + Lx7 LINE L1 7219 7267 -429 7 121 251 260 90 40 chr3 50986978 50987078 -108612705 + MT2B LTR ERVL 160 264 -337 7 121 615 179 18 0 chr3 50986995 50987107 -108612676 + B1_Mus2 SINE Alu 28 141 -6 7 974 7148 76 11 58 chr3 50987115 50988423 -108611360 - L1_Mus3 LINE L1 0 6638 5403 7 974 484 296 198 31 chr3 50988762 50989055 -108610728 - MLT2C1 LTR ERVL 0 397 56 7 974 215 268 44 0 chr3 50989427 50989519 -108610264 - L2a LINE L2 -270 3117 3018 7 974 405 0 0 0 chr3 50989667 50989712 -108610071 + (CA)n Simple_repeat Simple_repeat 2 46 0 8 974 375 339 17 0 chr3 50989919 50990037 -108609746 + ID_B1 SINE B4 1 120 -104 8 974 682 210 230 56 chr3 50990073 50990325 -108609458 + Lx8 LINE L1 7175 7470 -3 8 974 1101 236 5 0 chr3 50990395 50990603 -108609180 - B3 SINE B2 0 216 8 8 974 575 237 44 50 chr3 50990619 50990779 -108609004 - MER2 DNA MER2_type -123 222 64 8 974 349 259 65 0 chr3 50991109 50991217 -108608566 + MLT1A LTR MaLR 61 175 -269 8 974 249 57 0 0 chr3 50991282 50991317 -108608466 + (ATTG)n Simple_repeat Simple_repeat 1 35 0 8 974 524 276 14 29 chr3 50991317 50991455 -108608328 - ID_B1 SINE B4 -6 218 83 8 974 428 226 78 0 chr3 50991698 50991800 -108607983 + PB1D10 SINE Alu 1 110 -7 8 974 850 43 0 17 chr3 50991800 50991917 -108607866 + (GGAGA)n Simple_repeat Simple_repeat 5 119 0 8 974 403 304 122 7 chr3 50991944 50992083 -108607700 + RSINE1 SINE B4 4 158 -7 8 974 484 273 158 0 chr3 50992095 50992278 -108607505 - MTD LTR MaLR 0 419 208 8 974 437 250 80 40 chr3 50992293 50992418 -108607365 - MTD LTR MaLR -277 142 13 8 974 22 35 0 0 chr3 50992450 50992479 -108607304 + AT_rich Low_complexity Low_complexity 1 29 0 8 974 575 262 78 0 chr3 50993322 50993463 -108606320 + RSINE1 SINE B4 8 159 -6 8 974 186 43 0 0 chr3 50993491 50993514 -108606269 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 8 974 926 125 0 65 chr3 50993514 50993659 -108606124 - B1_Mus1 SINE Alu -9 139 2 8 974 26 30 0 0 chr3 50993660 50993693 -108606090 + AT_rich Low_complexity Low_complexity 1 33 0 8 974 283 53 0 0 chr3 50993887 50993925 -108605858 + PB1D9 SINE Alu 1 38 -82 8 974 1134 82 7 0 chr3 50994026 50994172 -108605611 + B1_Mus1 SINE Alu 2 148 0 8 974 369 0 0 0 chr3 50994340 50994381 -108605402 + (CA)n Simple_repeat Simple_repeat 2 42 0 8 974 538 250 50 56 chr3 50994411 50994572 -108605211 + MLT1A LTR MaLR 209 368 -6 8 974 734 286 27 14 chr3 50994680 50994900 -108604883 + ID_B1 SINE B4 1 223 -1 8 974 1002 173 62 0 chr3 50994972 50995151 -108604632 + B3 SINE B2 2 191 -25 8 974 619 246 0 0 chr3 50996157 50996279 -108603504 - ID_B1 SINE B4 -2 222 101 8 974 321 206 0 56 chr3 50996284 50996356 -108603427 - B1_Mur4 SINE Alu -68 82 15 8 974 1078 161 32 128 chr3 50996406 50996552 -108603231 + URR1A DNA MER1_type 1 147 -79 8 974 1482 60 0 5 chr3 50996552 50996737 -108603046 - B2_Mm2 SINE B2 -10 185 2 8 974 1078 161 32 128 chr3 50996737 50996840 -108602943 + URR1A DNA MER1_type 148 226 0 8 974 338 253 36 0 chr3 50996846 50996929 -108602854 + B1F SINE Alu 56 141 -8 8 974 225 194 90 77 chr3 50996961 50997039 -108602744 + ID_B1 SINE B4 125 203 -21 8 974 489 34 0 0 chr3 50997053 50997112 -108602671 + (CAGA)n Simple_repeat Simple_repeat 2 60 0 8 974 858 109 0 0 chr3 50997151 50997279 -108602504 + (GGGGA)n Simple_repeat Simple_repeat 3 130 0 8 974 359 324 20 0 chr3 50997287 50997389 -108602394 - MTD LTR MaLR -309 110 7 8 974 1101 76 0 40 chr3 50997506 50997642 -108602141 + B1_Mus2 SINE Alu 2 137 -10 8 974 801 0 0 0 chr3 50997642 50997731 -108602052 + (GAAA)n Simple_repeat Simple_repeat 2 90 0 8 974 1101 76 0 40 chr3 50997731 50997745 -108602038 + B1_Mus2 SINE Alu 138 146 -1 8 974 24 67 0 0 chr3 50997830 50997875 -108601908 + AT_rich Low_complexity Low_complexity 1 45 0 8 974 440 304 0 0 chr3 50998363 50998475 -108601308 + PB1D7 SINE Alu 1 112 -8 8 974 558 0 0 0 chr3 50998476 50998538 -108601245 + (GA)n Simple_repeat Simple_repeat 1 62 0 8 974 1189 177 9 23 chr3 50998552 50998766 -108601017 + B3 SINE B2 3 213 -3 8 974 377 266 84 163 chr3 50998825 50998991 -108600792 + B3A SINE B2 3 155 -43 8 974 279 0 0 0 chr3 50998999 50999030 -108600753 + (CA)n Simple_repeat Simple_repeat 2 32 0 8 974 397 256 89 16 chr3 50999207 50999330 -108600453 - MLT1J LTR MaLR -303 209 78 8 974 818 170 77 89 chr3 50999739 50999985 -108599798 + RLTR20B3 LTR ERVK 6 248 -329 8 974 708 168 77 42 chr3 51000000 51000193 -108599590 + RLTR11A LTR ERVK 240 447 -80 1 974 1281 76 23 0 chr3 51000194 51000365 -108599418 + B2_Mm2 SINE B2 7 181 -14 2 974 394 91 364 10 chr3 51000393 51000492 -108599291 + B2_Mm2 SINE B2 47 180 -15 3 974 400 266 9 35 chr3 51000480 51000593 -108599190 + RLTR11A LTR ERVK 419 528 0 1 974 291 54 0 0 chr3 51000776 51000813 -108598970 + (TCTG)n Simple_repeat Simple_repeat 3 39 0 4 974 234 371 9 37 chr3 51000832 51000941 -108598842 - PB1D7 SINE Alu -14 106 1 5 974 293 288 35 43 chr3 51001029 51001145 -108598638 - PB1D10 SINE Alu -2 115 1 6 974 336 298 107 65 chr3 51001840 51002009 -108597774 + B3A SINE B2 12 187 -6 7 974 507 183 0 0 chr3 51002487 51002569 -108597214 - B1F2 SINE Alu -54 95 14 8 974 237 348 22 22 chr3 51002716 51002807 -108596976 + MamGypLTR2c LTR Gypsy 948 1038 -30 9 974 1260 41 0 0 chr3 51002902 51003048 -108596735 - B1_Mus1 SINE Alu -2 146 1 1 974 237 263 168 0 chr3 51003055 51003150 -108596633 - PB1D10 SINE Alu -6 111 1 1 974 244 338 24 24 chr3 51003345 51003427 -108596356 + ID4 SINE ID 2 83 0 1 974 213 296 0 0 chr3 51003427 51003481 -108596302 + GA-rich Low_complexity Low_complexity 4 57 0 1 974 432 169 65 0 chr3 51003563 51003640 -108596143 + RSINE1 SINE B4 55 136 -29 1 974 210 71 0 0 chr3 51003643 51003671 -108596112 + (CA)n Simple_repeat Simple_repeat 1 28 0 1 974 624 244 242 10 chr3 51003687 51003985 -108595798 - L1MB8 LINE L1 -194 5984 5618 1 974 777 240 5 53 chr3 51004003 51004210 -108595573 - B3A SINE B2 0 198 2 1 974 232 233 31 82 chr3 51004583 51004681 -108595102 - ID_B1 SINE B4 -1 223 131 1 974 331 203 57 14 chr3 51004683 51004753 -108595030 - ID4 SINE ID -10 73 1 1 974 568 253 37 49 chr3 51005709 51005871 -108593912 + ID_B1 SINE B4 8 167 -57 2 974 256 237 0 17 chr3 51005875 51005935 -108593848 + GA-rich Low_complexity Low_complexity 2 60 0 2 974 463 289 30 30 chr3 51006877 51007041 -108592742 - MLT2B1 LTR ERVL -8 559 396 2 974 207 220 0 0 chr3 51007050 51007100 -108592683 + G-rich Low_complexity Low_complexity 2 51 0 2 974 409 290 167 0 chr3 51007327 51007465 -108592318 - RSINE1 SINE B4 -2 163 3 2 974 601 165 0 0 chr3 51008352 51008449 -108591334 + B1_Mur4 SINE Alu 2 98 -52 2 974 839 172 105 40 chr3 51008489 51008689 -108591094 - B3 SINE B2 -3 213 1 2 974 729 293 67 0 chr3 51009241 51009449 -108590334 - ID_B1 SINE B4 -1 223 2 2 974 357 62 0 0 chr3 51009461 51009509 -108590274 + (TTGG)n Simple_repeat Simple_repeat 2 49 0 2 974 278 155 183 33 chr3 51009542 51009602 -108590181 - ID4 SINE ID 0 83 15 2 974 509 233 24 24 chr3 51009607 51009730 -108590053 - B1F SINE Alu -3 146 24 3 974 457 302 21 28 chr3 51009609 51009752 -108590031 - ID_B1 SINE B4 -3 221 80 3 974 483 188 42 111 chr3 51009830 51009974 -108589809 + MT2B LTR ERVL 145 278 -323 3 974 994 119 0 20 chr3 51009855 51010001 -108589782 + B1_Mur3 SINE Alu 7 149 0 3 974 665 221 0 33 chr3 51010022 51010172 -108589611 + ID_B1 SINE B4 80 224 0 3 974 249 366 29 29 chr3 51010202 51010306 -108589477 + PB1D7 SINE Alu 12 115 -5 3 974 310 280 97 0 chr3 51011484 51011577 -108588206 - ID_B1 SINE B4 -2 222 121 3 974 874 261 39 0 chr3 51011958 51012165 -108587618 - ID_B1 SINE B4 -8 216 2 3 974 534 269 0 63 chr3 51012216 51012375 -108587408 + RSINE1 SINE B4 3 151 -14 3 974 460 277 80 12 chr3 51012406 51012554 -108587229 + B1_Mur3 SINE Alu 6 145 -4 3 974 278 231 0 0 chr3 51012647 51012699 -108587084 + ID2 SINE ID 16 67 -16 4 974 1284 169 90 4 chr3 51012720 51013031 -108586752 + BGLII_B LTR ERVK 1 342 -80 4 974 1045 40 48 0 chr3 51013031 51013155 -108586628 - B1_Mm SINE Alu -17 130 1 4 974 628 173 9 0 chr3 51013345 51013455 -108586328 + B1_Mur2 SINE Alu 39 149 0 4 974 312 137 0 0 chr3 51013455 51013506 -108586277 + (TAA)n Simple_repeat Simple_repeat 1 51 0 4 974 455 216 0 138 chr3 51013736 51013881 -108585902 - L1MD1 LINE L1 -6 6236 6112 4 974 735 307 39 43 chr3 51013888 51014121 -108585662 + B4A SINE B4 7 244 -48 4 974 2312 108 19 3 chr3 51014121 51014445 -108585338 + ORR1A4 LTR MaLR 1 329 0 4 974 735 307 39 43 chr3 51014445 51014490 -108585293 + B4A SINE B4 245 284 -8 4 974 405 0 0 0 chr3 51014516 51014561 -108585222 + (CA)n Simple_repeat Simple_repeat 2 46 0 4 974 2375 122 14 69 chr3 51014565 51014988 -108584795 + RLTR9F LTR ERVK 16 415 0 4 974 390 248 115 47 chr3 51015041 51015189 -108584594 + B2_Mm2 SINE B2 9 166 -29 5 974 228 35 0 0 chr3 51015599 51015628 -108584155 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 5 974 297 0 0 0 chr3 51015761 51015794 -108583989 + (TAAA)n Simple_repeat Simple_repeat 1 33 0 5 974 1092 104 0 0 chr3 51015806 51015950 -108583833 + B1_Mus1 SINE Alu 5 148 0 5 974 673 282 37 5 chr3 51016473 51016690 -108583093 + ID_B1 SINE B4 1 224 0 5 974 303 339 8 78 chr3 51016703 51016831 -108582952 - LTR16B1 LTR ERVL -239 241 123 5 974 961 130 0 7 chr3 51016982 51017129 -108582654 - B1_Mus1 SINE Alu 0 148 3 5 974 368 294 45 104 chr3 51017201 51017421 -108582362 + RLTR25A LTR ERVK 2 208 -895 5 974 1170 55 48 30 chr3 51017427 51017443 -108582340 - B2_Mm1a SINE B2 -20 173 161 5 974 351 0 0 0 chr3 51017443 51017482 -108582301 + (TTTA)n Simple_repeat Simple_repeat 3 41 0 5 974 1170 55 48 30 chr3 51017482 51017633 -108582150 - B2_Mm1a SINE B2 -33 160 3 5 974 763 10 0 20 chr3 51018583 51018681 -108581102 + (GGA)n Simple_repeat Simple_repeat 1 96 0 6 974 277 264 185 22 chr3 51018900 51019070 -108580713 + MLT1A LTR MaLR 13 213 -254 6 974 293 202 32 160 chr3 51019177 51019271 -108580512 + MLT1A LTR MaLR 230 311 -63 6 974 681 228 66 23 chr3 51019328 51019514 -108580269 + B3 SINE B2 1 186 -9 6 974 442 268 0 9 chr3 51019539 51019652 -108580131 + RMER5 LTR ERV1 382 493 -41 6 974 3622 74 19 4 chr3 51019919 51020394 -108579389 + RLTR45 LTR ERVK 1 482 0 6 974 369 0 0 0 chr3 51020695 51020736 -108579047 + (TTTTG)n Simple_repeat Simple_repeat 3 43 0 6 974 459 260 31 0 chr3 51020737 51020833 -108578950 - PB1D10 SINE Alu -12 105 7 6 974 653 255 21 0 chr3 51020750 51020891 -108578892 - ID_B1 SINE B4 -54 170 27 6 974 248 250 91 71 chr3 51021293 51021392 -108578391 - PB1D7 SINE Alu -2 118 18 6 974 3306 196 113 52 chr3 51021581 51021934 -108577849 + RMER19B LTR ERVK 1 398 -504 6 974 4129 41 16 0 chr3 51021934 51022419 -108577364 - MT2_Mm LTR ERVL 0 493 1 7 974 3306 196 113 52 chr3 51022419 51022915 -108576868 + RMER19B LTR ERVK 399 902 0 6 974 625 254 14 7 chr3 51022961 51023100 -108576683 + B1_Mur1 SINE Alu 10 149 0 7 974 302 286 34 137 chr3 51022984 51023130 -108576653 + B4 SINE B4 118 248 -44 7 974 290 271 29 0 chr3 51023259 51023329 -108576454 - B1_Mur2 SINE Alu -15 134 63 7 974 525 218 12 16 chr3 51023500 51023643 -108576140 + B1_Mur1 SINE Alu 1 145 -2 7 974 254 286 0 18 chr3 51024355 51024412 -108575371 - tRNA-Ala-GCY_ tRNA tRNA -1 74 19 7 974 829 139 22 7 chr3 51024423 51024561 -108575222 - B1_Mur1 SINE Alu 0 149 10 7 974 326 243 16 116 chr3 51024457 51024578 -108575205 - MT2B LTR ERVL -337 264 156 7 974 1430 237 91 82 chr3 51024595 51025110 -108574673 - RMER5 LTR ERV1 0 534 15 7 974 2055 269 106 51 chr3 51025510 51025710 -108574073 - Lx8 LINE L1 -234 7239 7009 7 974 902 112 67 0 chr3 51025710 51025844 -108573939 - B1_Mur3 SINE Alu -6 143 1 8 974 2055 269 106 51 chr3 51025844 51026631 -108573152 - Lx8 LINE L1 -465 7008 6197 7 974 1492 44 11 0 chr3 51026633 51026816 -108572967 - B2_Mm1t SINE B2 -7 186 2 8 974 285 258 0 15 chr3 51027446 51027513 -108572270 - ID2 SINE ID -14 69 4 8 974 444 185 170 42 chr3 51027949 51028101 -108571682 - B1_Mur4 SINE Alu -1 149 4 8 974 606 178 0 10 chr3 51030007 51030109 -108569674 - B1_Mur2 SINE Alu -28 121 21 8 974 363 274 23 31 chr3 51030008 51030136 -108569647 - ID_B1 SINE B4 -24 200 74 8 974 1116 58 7 0 chr3 51030155 51030294 -108569489 + B1_Mus1 SINE Alu 2 141 -7 8 974 271 263 167 10 chr3 51030997 51031093 -108568690 + RSINE1 SINE B4 50 160 -5 8 974 252 0 0 0 chr3 51031121 51031149 -108568634 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 8 974 242 114 133 4 chr3 51031201 51031265 -108568518 - B1_Mur2 SINE Alu 0 149 77 8 974 223 133 78 62 chr3 51031277 51031341 -108568442 + B1F1 SINE Alu 43 107 -42 9 974 231 204 74 0 chr3 51031289 51031343 -108568440 + MT2B LTR ERVL 211 268 -333 9 974 436 193 156 0 chr3 51031526 51031635 -108568148 + B1_Mm SINE Alu 1 126 -21 9 974 650 79 240 58 chr3 51031932 51032053 -108567730 - B1_Mus1 SINE Alu -1 147 5 9 974 343 217 220 31 chr3 51032075 51032231 -108567552 - B3 SINE B2 -14 184 1 9 974 228 216 59 0 chr3 51032298 51032349 -108567434 - FAM SINE Alu 0 315 262 9 974 275 291 92 124 chr3 51032306 51032363 -108567420 - B1F SINE Alu 0 149 98 9 974 1425 65 32 0 chr3 51032363 51032548 -108567235 - B2_Mm1a SINE B2 0 193 3 9 974 311 253 0 188 chr3 51032548 51032607 -108567176 - ID_B1 SINE B4 -49 175 130 9 974 275 291 92 124 chr3 51032607 51032643 -108567140 - B1F SINE Alu -52 97 2 9 974 1108 93 122 0 chr3 51033725 51033897 -108565886 - B2_Mm1t SINE B2 0 193 1 9 974 499 227 240 18 chr3 51033914 51034075 -108565708 - B3 SINE B2 -9 207 11 1 974 306 244 0 82 chr3 51034330 51034415 -108565368 - ID4 SINE ID -4 79 2 1 974 287 280 44 61 chr3 51034816 51034930 -108564853 + ID_B1 SINE B4 106 217 -7 1 974 225 170 64 0 chr3 51034888 51034935 -108564848 + PB1D7 SINE Alu 69 118 -2 1 974 282 221 29 29 chr3 51035108 51035178 -108564605 - ID4_ SINE ID -8 75 6 1 974 266 301 10 79 chr3 51035337 51035438 -108564345 + B1_Mm SINE Alu 7 100 -47 1 974 814 233 41 59 chr3 51035835 51036054 -108563729 - B3 SINE B2 0 216 2 1 974 210 227 114 51 chr3 51036207 51036286 -108563497 - B1_Mm SINE Alu 0 147 64 1 974 444 231 56 37 chr3 51036255 51036363 -108563420 - ID_B1 SINE B4 -25 199 90 1 974 404 344 42 26 chr3 51036469 51036516 -108563267 - B4 SINE B4 -11 281 88 1 974 557 265 12 10 chr3 51036516 51036660 -108563123 - B1_Mur1 SINE Alu -7 142 3 1 974 321 259 161 92 chr3 51036792 51036966 -108562817 - Cheshire DNA MER1_type -2231 189 4 1 974 778 20 0 0 chr3 51037240 51037340 -108562443 - L1Md_T LINE L1 0 6582 6483 1 974 310 270 0 0 chr3 51037945 51038008 -108561775 - ID4_ SINE ID -10 73 11 1 974 272 306 0 27 chr3 51038202 51038276 -108561507 + ID_B1 SINE B4 86 157 -67 1 974 215 357 35 23 chr3 51038276 51038288 -108561495 + B1F1 SINE Alu 5 91 -58 1 974 299 292 46 0 chr3 51038897 51038962 -108560821 + BC1_Mm scRNA scRNA 16 83 -69 1 974 336 221 59 0 chr3 51039015 51039093 -108560690 - B1_Mur1 SINE Alu -12 137 56 1 974 287 260 22 115 chr3 51039076 51039215 -108560568 + MT2B LTR ERVL 132 257 -344 1 974 635 191 29 37 chr3 51039118 51039254 -108560529 + B1_Mur3 SINE Alu 11 145 -4 1 974 1636 171 177 33 chr3 51039415 51039717 -108560066 + MTC LTR MaLR 1 350 -71 1 974 3460 26 13 0 chr3 51039717 51040108 -108559675 - MTA_Mm LTR MaLR 0 396 1 1 974 1636 171 177 33 chr3 51040108 51040173 -108559610 + MTC LTR MaLR 351 421 0 1 974 299 167 19 0 chr3 51040887 51040941 -108558842 + tRNA-Ala-GCY_ tRNA tRNA 1 55 -20 1 974 308 311 156 22 chr3 51041043 51041178 -108558605 - L1M4 LINE L1 -512 5666 5514 1 974 248 210 85 12 chr3 51041189 51041271 -108558512 - L1MD LINE L1 -1037 5109 5022 1 974 361 291 29 0 chr3 51041454 51041557 -108558226 - B1F1 SINE Alu -1 148 43 1 974 271 265 112 0 chr3 51041599 51041697 -108558086 - B3A SINE B2 -83 115 7 1 974 1199 237 116 12 chr3 51042236 51042421 -108557362 - ORR1D1 LTR MaLR -5 369 153 1 974 510 79 0 0 chr3 51042421 51042497 -108557286 + (TG)n Simple_repeat Simple_repeat 2 77 0 1 974 1199 237 116 12 chr3 51042497 51042640 -108557143 - ORR1D1 LTR MaLR -222 152 8 1 974 289 216 75 85 chr3 51043681 51043787 -108555996 - PB1D10 SINE Alu -21 128 24 1 974 471 18 0 0 chr3 51043793 51043849 -108555934 + (TG)n Simple_repeat Simple_repeat 1 56 0 1 974 2819 22 5 129 chr3 51043889 51044308 -108555475 + IAPLTR1_Mm LTR ERVK 1 367 0 1 974 7345 102 86 20 chr3 51044308 51045534 -108554249 + IAPEz-int LTR ERVK 8 1313 -5168 1 974 28022 21 1 1 chr3 51045532 51048804 -108550979 + IAPEz-int LTR ERVK 3209 6481 0 1 974 2819 22 5 129 chr3 51048804 51049223 -108550560 + IAPLTR1_Mm LTR ERVK 1 367 0 1 974 606 178 59 8 chr3 51049262 51049381 -108550402 - B1_Mur1 SINE Alu 0 149 25 1 974 331 332 202 19 chr3 51049404 51049711 -108550072 + L2a LINE L2 3040 3402 -24 1 974 725 174 33 53 chr3 51049851 51050003 -108549780 - B1_Mur2 SINE Alu 0 149 1 1 974 365 195 20 152 chr3 51049875 51050026 -108549757 - MT2B LTR ERVL -326 275 145 1 974 467 271 138 35 chr3 51050184 51050329 -108549454 - RSINE1 SINE B4 -4 161 2 1 974 847 94 17 0 chr3 51050501 51050618 -108549165 + PB1D9 SINE Alu 2 120 0 1 974 636 292 35 18 chr3 51050805 51050976 -108548807 + B3A SINE B2 1 174 -24 1 974 548 70 0 0 chr3 51050977 51051048 -108548735 - B2_Mm2 SINE B2 -124 71 1 1 974 807 145 13 46 chr3 51051256 51051408 -108548375 - B1_Mur4 SINE Alu -2 148 2 1 974 220 242 96 87 chr3 51052198 51052242 -108547541 + B1F SINE Alu 45 149 0 1 974 264 228 33 50 chr3 51052242 51052302 -108547481 + ID_B1 SINE B4 163 221 -3 1 974 472 210 43 0 chr3 51052360 51052464 -108547319 + PB1D9 SINE Alu 1 107 -13 1 974 817 145 20 46 chr3 51052777 51052929 -108546854 - B1_Mus1 SINE Alu 0 148 1 1 974 305 294 55 9 chr3 51053446 51053556 -108546227 - PB1D9 SINE Alu -5 115 1 1 974 22 56 0 0 chr3 51054838 51054874 -108544909 + AT_rich Low_complexity Low_complexity 1 36 0 1 974 331 262 49 12 chr3 51055287 51055368 -108544415 + PB1D10 SINE Alu 30 113 -4 1 974 404 250 59 10 chr3 51056004 51056105 -108543678 + ID_B1 SINE B4 118 223 -1 1 974 617 197 86 14 chr3 51056216 51056355 -108543428 - B1F SINE Alu 0 149 1 1 974 305 238 0 56 chr3 51056674 51056763 -108543020 + PB1D10 SINE Alu 13 96 -21 1 974 476 208 112 38 chr3 51057264 51057424 -108542359 + B3A SINE B2 3 174 -24 1 974 374 223 204 6 chr3 51058347 51058514 -108541269 + B3 SINE B2 5 204 -12 1 974 236 287 31 21 chr3 51058559 51058655 -108541128 + Charlie6 DNA MER1_type 1370 1466 -2034 1 974 22 35 0 0 chr3 51059586 51059615 -108540168 + AT_rich Low_complexity Low_complexity 1 29 0 1 974 21 57 0 0 chr3 51059703 51059738 -108540045 + AT_rich Low_complexity Low_complexity 1 35 0 1 974 262 209 119 0 chr3 51061014 51061081 -108538702 - ID4 SINE ID -5 78 4 1 974 453 252 46 23 chr3 51061081 51061211 -108538572 - B1F1 SINE Alu -7 142 10 1 974 375 275 246 6 chr3 51061877 51062060 -108537723 + MTE2b LTR MaLR 1 227 -152 1 974 245 279 25 25 chr3 51062234 51062315 -108537468 - B1F2 SINE Alu -61 88 8 1 974 423 186 48 10 chr3 51062467 51062570 -108537213 + PB1D10 SINE Alu 10 116 -1 1 974 362 276 76 17 chr3 51062674 51062792 -108536991 - ID_B1 SINE B4 -19 205 81 1 974 535 167 108 0 chr3 51063389 51063509 -108536274 - B1_Mur1 SINE Alu -5 144 12 1 974 443 245 117 10 chr3 51064041 51064144 -108535639 + B3 SINE B2 1 114 -102 1 974 944 111 37 0 chr3 51064199 51064334 -108535449 + B1_Mus2 SINE Alu 1 140 -7 1 974 694 78 8 23 chr3 51064729 51064860 -108534923 + RMER17B LTR ERVK 332 460 -498 1 974 22 0 0 0 chr3 51064860 51064882 -108534901 + AT_rich Low_complexity Low_complexity 1 22 0 1 974 580 134 0 0 chr3 51065445 51065542 -108534241 - B1_Mus1 SINE Alu -41 107 11 1 974 257 239 123 177 chr3 51066392 51066595 -108533188 - L1MA4A LINE L1 -380 5923 5732 1 974 231 273 122 29 chr3 51067004 51067201 -108532582 - L1MA4A LINE L1 -688 5486 5271 1 974 612 189 50 136 chr3 51067590 51067810 -108531973 - B3 SINE B2 -14 202 2 1 974 273 170 0 0 chr3 51067847 51067894 -108531889 + PB1D9 SINE Alu 23 69 -51 1 974 236 295 20 50 chr3 51067901 51068001 -108531782 + GA-rich Low_complexity Low_complexity 5 101 0 1 974 399 21 0 0 chr3 51068403 51068451 -108531332 + (TG)n Simple_repeat Simple_repeat 1 48 0 1 974 374 273 0 57 chr3 51068501 51068606 -108531177 + PB1D10 SINE Alu 12 110 -7 1 974 248 178 93 27 chr3 51068612 51068687 -108531096 + RLTR25B LTR ERVK 430 509 -519 1 974 650 79 10 0 chr3 51068628 51068729 -108531054 + B1_Mus2 SINE Alu 46 147 0 1 974 674 218 155 11 chr3 51069211 51069392 -108530391 - B3 SINE B2 -9 207 1 1 974 33 0 0 0 chr3 51069526 51069559 -108530224 + AT_rich Low_complexity Low_complexity 1 33 0 1 974 1133 187 25 0 chr3 51069781 51069984 -108529799 + B3 SINE B2 2 209 -7 1 974 21 0 0 0 chr3 51070148 51070169 -108529614 + AT_rich Low_complexity Low_complexity 1 21 0 1 974 829 100 3 25 chr3 51070456 51070609 -108529174 - B1_Mus1 SINE Alu 0 150 1 1 974 22 0 0 0 chr3 51070920 51070942 -108528841 + AT_rich Low_complexity Low_complexity 1 22 0 1 974 243 0 0 0 chr3 51071525 51071552 -108528231 + (TGGG)n Simple_repeat Simple_repeat 3 29 0 1 974 297 258 15 0 chr3 51071884 51071950 -108527833 - ID4 SINE ID -3 80 14 1 974 423 0 0 0 chr3 51071955 51072002 -108527781 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 974 438 20 0 0 chr3 51072002 51072052 -108527731 + (GA)n Simple_repeat Simple_repeat 2 52 0 1 974 393 331 44 0 chr3 51073099 51073235 -108526548 - ID_B1 SINE B4 -1 223 82 1 974 1214 115 16 0 chr3 51073766 51073949 -108525834 + B2_Mm1t SINE B2 2 187 -6 1 974 338 192 0 0 chr3 51074869 51074942 -108524841 - MER33 DNA MER1_type -104 220 148 1 974 235 261 108 11 chr3 51075021 51075114 -108524669 - Charlie1 DNA MER1_type -26 2755 2654 1 974 393 212 0 0 chr3 51075364 51075430 -108524353 - ID4_ SINE ID -16 67 2 1 974 445 278 27 34 chr3 51075432 51075581 -108524202 - B1F SINE Alu 0 149 2 1 974 360 0 0 0 chr3 51075950 51075990 -108523793 + (TG)n Simple_repeat Simple_repeat 1 40 0 1 974 306 134 0 0 chr3 51075992 51076059 -108523724 + (GA)n Simple_repeat Simple_repeat 2 68 0 1 974 755 156 0 30 chr3 51076061 51076193 -108523590 - B1_Mur4 SINE Alu -12 138 11 1 974 267 263 0 82 chr3 51076464 51076659 -108523124 + (CAGAGA)n Simple_repeat Simple_repeat 1 179 0 1 974 245 274 0 93 chr3 51076723 51076916 -108522867 + (CAGAGA)n Simple_repeat Simple_repeat 6 180 0 1 974 768 277 56 80 chr3 51077146 51077433 -108522350 + B4A SINE B4 6 285 -7 1 974 685 172 8 0 chr3 51077492 51077614 -108522169 + B1_Mur2 SINE Alu 27 149 0 1 974 193 77 50 25 chr3 51077619 51077659 -108522124 + GA-rich Low_complexity Low_complexity 5 45 0 1 974 298 175 18 0 chr3 51078102 51078159 -108521624 - B1_Mus2 SINE Alu -85 62 5 2 974 664 186 91 75 chr3 51079193 51079379 -108520404 - B3 SINE B2 -27 189 1 2 974 21 0 0 0 chr3 51080625 51080646 -108519137 + GC_rich Low_complexity Low_complexity 1 21 0 2 974 31 44 0 0 chr3 51080684 51080729 -108519054 + GC_rich Low_complexity Low_complexity 1 45 0 2 974 203 88 29 0 chr3 51080863 51080897 -108518886 + (CCG)n Simple_repeat Simple_repeat 3 37 0 2 974 25 65 0 0 chr3 51081042 51081088 -108518695 + GC_rich Low_complexity Low_complexity 1 46 0 2 974 24 32 0 0 chr3 51081353 51081384 -108518399 + GC_rich Low_complexity Low_complexity 1 31 0 2 974 252 149 0 0 chr3 51082806 51082853 -108516930 + (TG)n Simple_repeat Simple_repeat 1 47 0 2 974 284 246 227 36 chr3 51083784 51083978 -108515805 + MLT1F1 LTR MaLR 307 537 -32 2 974 718 188 27 27 chr3 51083980 51084128 -108515655 - B1_Mur3 SINE Alu 0 149 2 2 974 525 138 257 0 chr3 51084414 51084523 -108515260 - B1_Mur3 SINE Alu -10 139 3 2 974 562 192 208 19 chr3 51084650 51084804 -108514979 - B3A SINE B2 -14 184 2 2 974 284 254 15 0 chr3 51084832 51084899 -108514884 - ID4 SINE ID 0 83 16 2 974 297 174 174 0 chr3 51084942 51085011 -108514772 - ID_B1 SINE B4 -44 180 100 2 974 674 218 7 27 chr3 51085552 51085698 -108514085 + B1_Mur2 SINE Alu 7 149 0 2 974 180 176 0 0 chr3 51085762 51085796 -108513987 + A-rich Low_complexity Low_complexity 1 34 0 2 974 339 25 0 0 chr3 51086776 51086816 -108512967 + (TA)n Simple_repeat Simple_repeat 2 41 0 2 974 316 213 245 0 chr3 51087008 51087102 -108512681 - PB1D9 SINE Alu -2 118 2 2 974 787 212 83 29 chr3 51087271 51087475 -108512308 - B3 SINE B2 0 216 2 2 974 1026 147 184 0 chr3 51087749 51087939 -108511844 - URR1B DNA MER1_type 0 225 1 2 974 1465 223 167 109 chr3 51088358 51088982 -108510801 + Lx6 LINE L1 6797 7456 -4 2 974 228 384 0 0 chr3 51089064 51089137 -108510646 - ID4_ SINE ID -9 74 2 2 974 1273 171 175 23 chr3 51089169 51089523 -108510260 + MTD LTR MaLR 1 408 -11 2 974 249 108 0 26 chr3 51089526 51089564 -108510219 - L1M5 LINE L1 -1994 4152 4116 2 974 244 282 24 0 chr3 51089687 51089772 -108510011 - L1M2 LINE L1 -2189 3954 3868 2 974 556 264 28 0 chr3 51089974 51090118 -108509665 - RSINE1 SINE B4 -17 148 1 2 974 1146 317 81 83 chr3 51090155 51090741 -108509042 - Lx8 LINE L1 -16 7457 6826 2 974 1269 34 0 0 chr3 51090741 51090887 -108508896 + B1_Mm SINE Alu 2 147 0 2 974 1146 317 81 83 chr3 51090887 51091126 -108508657 - Lx8 LINE L1 -648 6825 6634 2 974 21 0 0 0 chr3 51091221 51091242 -108508541 + AT_rich Low_complexity Low_complexity 1 21 0 2 974 616 185 14 7 chr3 51091245 51091392 -108508391 + CT-rich Low_complexity Low_complexity 3 150 0 2 974 771 138 21 48 chr3 51091429 51091574 -108508209 - B1_Mus1 SINE Alu -1 147 7 2 974 619 249 91 32 chr3 51091586 51091773 -108508010 - B3A SINE B2 0 198 1 2 974 32 57 0 0 chr3 51091956 51092009 -108507774 + AT_rich Low_complexity Low_complexity 1 53 0 2 974 241 330 29 19 chr3 51092239 51092344 -108507439 - PB1D10 SINE Alu -1 116 11 2 974 560 178 0 0 chr3 51092847 51092937 -108506846 - PB1D10 SINE Alu -6 111 22 2 974 516 261 21 14 chr3 51092997 51093141 -108506642 + ID_B1 SINE B4 80 224 0 2 974 588 246 25 56 chr3 51093541 51093739 -108506044 + B3A SINE B2 1 192 -6 2 974 225 0 0 0 chr3 51093802 51093827 -108505956 + (TG)n Simple_repeat Simple_repeat 2 26 0 2 974 618 237 50 20 chr3 51093836 51094038 -108505745 - B3 SINE B2 -7 209 2 2 974 221 180 0 20 chr3 51094286 51094337 -108505446 + T-rich Low_complexity Low_complexity 4 53 0 2 974 333 125 0 0 chr3 51094702 51094758 -108505025 + (CA)n Simple_repeat Simple_repeat 1 56 0 2 974 613 189 57 0 chr3 51094896 51095018 -108504765 - B1_Mur3 SINE Alu -20 129 1 2 974 461 326 7 0 chr3 51095344 51095491 -108504292 - RSINE1 SINE B4 -15 150 3 2 974 457 304 31 25 chr3 51095657 51095742 -108504041 + MER5A DNA MER1_type 27 116 -73 2 974 355 298 16 47 chr3 51095742 51095869 -108503914 + PB1 SINE Alu 3 125 -2 2 974 457 304 31 25 chr3 51095869 51095945 -108503838 + MER5A DNA MER1_type 117 189 0 2 974 220 235 28 42 chr3 51096091 51096162 -108503621 + ID4 SINE ID 1 70 -13 2 974 585 277 32 6 chr3 51096169 51096325 -108503458 + RSINE1 SINE B4 2 161 -4 2 974 263 206 210 30 chr3 51096363 51096463 -108503320 + RSINE1 SINE B4 2 119 -46 2 974 369 43 0 0 chr3 51096480 51096527 -108503256 + (TG)n Simple_repeat Simple_repeat 1 47 0 2 974 504 0 0 0 chr3 51096527 51096582 -108503201 + (GA)n Simple_repeat Simple_repeat 1 56 0 2 974 726 213 199 11 chr3 51096699 51096875 -108502908 - B3 SINE B2 -7 209 1 2 974 703 157 197 0 chr3 51096934 51097112 -108502671 - URR1B DNA MER1_type -12 213 1 2 974 319 279 13 0 chr3 51097173 51097252 -108502531 + RSINE1 SINE B4 15 94 -71 2 974 800 115 146 0 chr3 51097400 51097530 -108502253 - B1_Mur3 SINE Alu 0 149 1 2 974 226 321 36 18 chr3 51097531 51097642 -108502141 + Charlie4a DNA MER1_type 159 271 -237 2 974 249 196 0 0 chr3 51097735 51097791 -108501992 + (CATA)n Simple_repeat Simple_repeat 3 58 0 2 974 1109 193 70 29 chr3 51098131 51098403 -108501380 - ORR1D1 LTR MaLR -81 293 11 2 974 468 0 0 0 chr3 51098982 51099034 -108500749 + (TAGA)n Simple_repeat Simple_repeat 3 54 0 2 974 287 135 0 37 chr3 51099480 51099534 -108500249 + B1_Mur4 SINE Alu 2 53 -97 2 974 180 0 0 0 chr3 51099927 51099947 -108499836 + (T)n Simple_repeat Simple_repeat 1 20 0 2 974 1694 16 16 0 chr3 51099962 51100152 -108499631 - B2_Mm1a SINE B2 0 193 1 2 974 353 75 19 0 chr3 51101097 51101150 -108498633 + (TATG)n Simple_repeat Simple_repeat 1 54 0 2 974 326 181 75 122 chr3 51101160 51101267 -108498516 - B4 SINE B4 0 292 191 2 974 936 123 13 40 chr3 51101306 51101458 -108498325 - B1_Mur4 SINE Alu -1 149 2 2 974 1105 58 0 0 chr3 51101565 51101703 -108498080 + B1_Mm SINE Alu 2 139 -8 2 974 198 0 0 0 chr3 51101703 51101725 -108498058 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 2 974 325 283 107 80 chr3 51101768 51101918 -108497865 + B4 SINE B4 70 223 -69 2 974 736 157 60 0 chr3 51101785 51101919 -108497864 + B1_Mus1 SINE Alu 6 147 -1 2 974 618 269 37 16 chr3 51102065 51102254 -108497529 - B3A SINE B2 -4 194 2 2 974 331 315 0 0 chr3 51102264 51102356 -108497427 - PB1D10 SINE Alu -7 110 19 2 974 376 331 0 0 chr3 51102473 51102696 -108497087 + (CACAC)n Simple_repeat Simple_repeat 1 223 0 2 974 376 331 0 0 chr3 51102689 51102921 -108496862 + (CACAC)n Simple_repeat Simple_repeat 1 232 0 2 974 412 239 65 35 chr3 51103094 51103263 -108496520 + MER104 DNA Tc2 5 178 -3 2 974 436 268 136 34 chr3 51104147 51104294 -108495489 - RSINE1 SINE B4 -1 164 3 2 974 273 303 10 29 chr3 51104507 51104609 -108495174 + PB1 SINE Alu 2 101 -26 2 974 23 0 0 0 chr3 51104618 51104641 -108495142 + AT_rich Low_complexity Low_complexity 1 23 0 2 974 1258 34 0 0 chr3 51104699 51104845 -108494938 + B1_Mus2 SINE Alu 2 147 0 2 974 28 29 0 0 chr3 51105081 51105116 -108494667 + AT_rich Low_complexity Low_complexity 1 35 0 2 974 379 274 17 17 chr3 51105140 51105255 -108494528 - PB1D10 SINE Alu -1 116 2 2 974 274 100 33 0 chr3 51105347 51105407 -108494376 + (CA)n Simple_repeat Simple_repeat 1 62 0 2 974 371 275 12 0 chr3 51107681 51107761 -108492022 - ID4_ SINE ID 0 83 3 2 974 571 195 92 23 chr3 51108471 51108602 -108491181 + B1_Mur3 SINE Alu 1 140 -9 2 974 459 0 0 0 chr3 51108602 51108653 -108491130 + (CA)n Simple_repeat Simple_repeat 2 52 0 2 974 504 77 0 0 chr3 51108653 51108731 -108491052 + (GA)n Simple_repeat Simple_repeat 1 78 0 2 974 537 250 19 37 chr3 51108822 51108984 -108490799 - RSINE1 SINE B4 -4 161 3 2 974 1222 42 0 0 chr3 51109279 51109421 -108490362 + B1_Mus1 SINE Alu 1 142 -6 2 974 207 0 0 0 chr3 51109424 51109447 -108490336 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2 974 1113 89 12 12 chr3 51109561 51109732 -108490051 + B2_Mm2 SINE B2 2 172 -23 2 974 547 211 84 88 chr3 51110414 51110622 -108489161 + B3 SINE B2 1 192 -3 2 974 264 122 0 0 chr3 51111067 51111108 -108488675 + (CA)n Simple_repeat Simple_repeat 2 42 0 2 974 441 0 0 0 chr3 51111393 51111442 -108488341 + (CAAAA)n Simple_repeat Simple_repeat 3 51 0 2 974 575 108 42 0 chr3 51111795 51111916 -108487867 + B3 SINE B2 1 210 -6 2 974 1478 78 0 5 chr3 51112600 51112794 -108486989 + B2_Mm2 SINE B2 3 195 0 2 974 369 260 0 30 chr3 51113036 51113135 -108486648 + Ricksha_c DNA MuDR 350 445 -1603 2 974 1073 82 0 27 chr3 51113300 51113450 -108486333 + B2_Mm2 SINE B2 1 146 -49 2 974 365 194 148 33 chr3 51113453 51113543 -108486240 - PB1 SINE Alu -14 113 22 2 974 227 324 0 29 chr3 51113887 51113907 -108485876 + ID_B1 SINE B4 91 192 -32 2 974 351 235 0 0 chr3 51113907 51113992 -108485791 + B1_Mur2 SINE Alu 30 114 -35 2 974 228 290 16 0 chr3 51113990 51114052 -108485731 - B1F SINE Alu -14 135 73 2 974 450 0 0 0 chr3 51114446 51114496 -108485287 + (CA)n Simple_repeat Simple_repeat 1 50 0 2 974 252 0 0 0 chr3 51114498 51114526 -108485257 + (CCCCCA)n Simple_repeat Simple_repeat 2 29 0 2 974 285 237 0 97 chr3 51114702 51114805 -108484978 - B1F1 SINE Alu -54 95 3 3 974 917 102 87 7 chr3 51114957 51115095 -108484688 + B1_Mur4 SINE Alu 1 149 -1 3 974 372 259 35 0 chr3 51115180 51115296 -108484487 - PB1D9 SINE Alu 0 120 1 3 974 626 335 109 32 chr3 51115863 51116202 -108483581 + MLT1B LTR MaLR 1 365 -25 3 974 851 71 50 0 chr3 51116582 51116766 -108483017 - RMER6A LTR ERVK -516 240 1 3 974 439 265 17 0 chr3 51117003 51117120 -108482663 - B1_Mus2 SINE Alu -27 120 2 3 974 283 308 75 28 chr3 51117367 51117384 -108482399 - RSINE1 SINE B4 -7 158 142 3 974 339 25 0 0 chr3 51117384 51117424 -108482359 + (CA)n Simple_repeat Simple_repeat 1 40 0 3 974 283 308 75 28 chr3 51117424 51117513 -108482270 - RSINE1 SINE B4 -24 141 48 3 974 737 224 147 0 chr3 51117611 51117781 -108482002 - B3 SINE B2 -21 195 1 3 974 1255 109 27 0 chr3 51117811 51117995 -108481788 - B2_Mm2 SINE B2 -5 190 2 3 975 305 278 130 51 chr3 51118146 51118345 -108481438 - L1MD LINE L1 -535 5649 5429 3 975 1093 119 42 31 chr3 51118345 51118536 -108481247 - B2_Mm2 SINE B2 -1 194 2 3 975 305 272 126 53 chr3 51118536 51118577 -108481206 - L1MD LINE L1 -931 5428 5386 3 975 350 256 186 38 chr3 51118676 51118859 -108480924 - B4A SINE B4 -81 211 2 3 975 235 294 79 93 chr3 51119161 51119300 -108480483 + MLT1A1 LTR MaLR 264 400 -8 3 975 249 108 0 0 chr3 51119330 51119367 -108480416 + (TTTA)n Simple_repeat Simple_repeat 2 38 0 3 975 433 176 23 12 chr3 51119401 51119487 -108480296 - B1_Mus1 SINE Alu -61 87 1 3 975 270 187 44 176 chr3 51119412 51119503 -108480280 - MT2B LTR ERVL -370 231 153 3 975 313 272 130 0 chr3 51119526 51119618 -108480165 - PB1D10 SINE Alu 0 117 14 3 975 646 200 56 28 chr3 51119717 51119861 -108479922 + B1_Mur1 SINE Alu 1 148 -1 3 975 311 241 75 12 chr3 51119937 51120097 -108479686 - L1MEc LINE L1 -4507 1893 1724 3 975 243 0 0 0 chr3 51120128 51120155 -108479628 + (TG)n Simple_repeat Simple_repeat 1 27 0 3 975 514 299 13 19 chr3 51120315 51120472 -108479311 - B3 SINE B2 -6 210 55 3 975 512 171 0 0 chr3 51120455 51120531 -108479252 - B1_Mus1 SINE Alu -68 80 5 3 975 429 144 0 143 chr3 51120531 51120560 -108479223 - MT2B LTR ERVL -365 236 147 3 975 390 232 80 30 chr3 51120677 51120877 -108478906 - L1MEc LINE L1 -4920 1480 1271 3 975 1139 122 31 21 chr3 51121486 51121678 -108478105 - B2_Mm2 SINE B2 -1 194 1 3 975 1398 99 5 0 chr3 51122087 51122278 -108477505 - B2_Mm1a SINE B2 -1 192 1 3 975 1069 36 0 7 chr3 51122284 51122423 -108477360 - L1Md_F3 LINE L1 -9 6575 6438 3 975 715 259 70 20 chr3 51122748 51122949 -108476834 + B3 SINE B2 2 212 -4 3 975 742 207 149 5 chr3 51122957 51123151 -108476632 + ID_B1 SINE B4 1 222 -2 3 975 447 87 0 0 chr3 51123205 51123274 -108476509 + (TG)n Simple_repeat Simple_repeat 1 69 0 3 975 22 70 0 0 chr3 51123283 51123326 -108476457 + AT_rich Low_complexity Low_complexity 1 43 0 3 975 418 280 59 0 chr3 51123328 51123446 -108476337 - RSINE1 SINE B4 -40 125 1 3 975 643 143 151 0 chr3 51123687 51123806 -108475977 - B1_Mus2 SINE Alu -4 143 7 3 975 525 254 0 0 chr3 51123829 51123939 -108475844 - PB1D10 SINE Alu -7 110 1 3 975 633 223 177 0 chr3 51124097 51124272 -108475511 + B3 SINE B2 3 208 -8 3 975 1259 85 0 22 chr3 51124341 51124522 -108475261 + B2_Mm2 SINE B2 1 177 -18 3 975 224 68 85 0 chr3 51124661 51124720 -108475063 + (TTTG)n Simple_repeat Simple_repeat 1 64 0 3 975 1200 54 0 13 chr3 51124720 51124869 -108474914 - B1_Mus1 SINE Alu -1 147 1 3 975 225 146 0 0 chr3 51124974 51125022 -108474761 + (GA)n Simple_repeat Simple_repeat 1 48 0 3 975 233 339 147 0 chr3 51125022 51125131 -108474652 - RSINE1 SINE B4 -40 125 1 3 975 944 196 41 0 chr3 51125134 51125328 -108474455 - B3 SINE B2 -6 210 9 3 975 1044 136 96 0 chr3 51127601 51127778 -108472005 + B3 SINE B2 10 203 -13 3 975 22 0 0 0 chr3 51127784 51127806 -108471977 + AT_rich Low_complexity Low_complexity 1 22 0 3 975 335 184 216 127 chr3 51127868 51127910 -108471873 + B3A SINE B2 2 43 -155 3 975 901 143 0 52 chr3 51127910 51128065 -108471718 + B1_Mus1 SINE Alu 1 147 -1 3 975 335 184 216 127 chr3 51128065 51128203 -108471580 + B3A SINE B2 44 197 -1 3 975 831 109 378 0 chr3 51128357 51128513 -108471270 - B3 SINE B2 0 216 2 3 975 261 26 0 0 chr3 51128568 51128606 -108471177 - L1_Mus2 LINE L1 0 6566 6529 3 975 2592 70 6 14 chr3 51128609 51128959 -108470824 - L1_Mus2 LINE L1 0 6566 6220 3 975 716 189 232 11 chr3 51129281 51129458 -108470325 - B3 SINE B2 0 216 1 3 975 826 252 14 19 chr3 51129504 51129718 -108470065 - B3 SINE B2 -3 213 1 3 975 411 237 139 33 chr3 51130273 51130395 -108469388 - B3 SINE B2 -81 135 1 3 975 30 0 0 0 chr3 51130454 51130484 -108469299 + AT_rich Low_complexity Low_complexity 1 30 0 3 975 896 159 18 47 chr3 51130485 51130656 -108469127 - B2_Mm2 SINE B2 -27 168 3 3 975 2071 152 81 13 chr3 51130656 51131050 -108468733 + MTC LTR MaLR 1 421 0 3 975 214 299 188 38 chr3 51131093 51131173 -108468610 + PB1D9 SINE Alu 2 93 -27 3 975 236 302 108 45 chr3 51131105 51131176 -108468607 + MT2B2 LTR ERVL 175 255 -329 3 975 240 59 0 0 chr3 51131176 51131210 -108468573 + (CAGA)n Simple_repeat Simple_repeat 1 34 0 3 975 236 302 108 45 chr3 51131210 51131249 -108468534 + MT2B2 LTR ERVL 256 292 -292 3 975 216 225 0 0 chr3 51131218 51131258 -108468525 + PB1D9 SINE Alu 5 44 -76 3 975 716 283 119 95 chr3 51131286 51131414 -108468369 + L1M4c LINE L1 1335 1441 -4943 3 975 765 258 23 23 chr3 51131414 51131628 -108468155 + B3 SINE B2 2 215 -1 3 975 716 283 119 95 chr3 51131628 51132257 -108467526 + L1M4c LINE L1 1442 2110 -4274 3 975 228 250 111 0 chr3 51132257 51132329 -108467454 - ID4 SINE ID -2 81 2 3 975 291 237 122 54 chr3 51132329 51132534 -108467249 + L1M4c LINE L1 2095 2313 -4071 3 975 1224 93 49 11 chr3 51132966 51133150 -108466633 + B2_Mm1t SINE B2 2 192 -1 3 975 807 169 0 0 chr3 51133150 51133298 -108466485 + GA-rich Low_complexity Low_complexity 1 148 0 3 975 402 302 106 6 chr3 51134144 51134314 -108465469 - B3A SINE B2 -7 191 5 3 975 279 231 211 55 chr3 51134765 51134893 -108464890 + B4 SINE B4 51 198 -94 3 975 483 122 1 257 chr3 51134819 51134963 -108464820 + B1_Mur1 SINE Alu 40 140 -9 3 975 306 331 64 7 chr3 51135013 51135153 -108464630 + L1MB8 LINE L1 1568 1715 -5189 3 975 906 109 35 28 chr3 51135160 51135292 -108464491 + B1_Mur3 SINE Alu 5 139 -10 3 975 186 43 0 0 chr3 51135292 51135315 -108464468 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 3 975 560 194 274 18 chr3 51135337 51135505 -108464278 + B3 SINE B2 1 211 -5 3 975 843 209 99 30 chr3 51135652 51135854 -108463929 + B3 SINE B2 1 216 0 3 975 339 303 40 40 chr3 51135889 51136037 -108463746 + B1_Mus1 SINE Alu 1 148 0 3 975 318 352 46 86 chr3 51136067 51136113 -108463670 + B4 SINE B4 55 220 -71 3 975 775 205 0 0 chr3 51136113 51136240 -108463543 + B1_Mur4 SINE Alu 18 144 -6 3 975 324 0 0 0 chr3 51136241 51136277 -108463506 + (CA)n Simple_repeat Simple_repeat 1 36 0 3 975 394 301 49 37 chr3 51136316 51136478 -108463305 + RSINE1 SINE B4 1 164 -1 3 975 564 184 304 0 chr3 51136482 51136640 -108463143 + B3 SINE B2 1 206 -10 3 975 608 38 0 12 chr3 51136672 51136752 -108463031 + (GGAA)n Simple_repeat Simple_repeat 3 81 0 3 975 23 0 0 0 chr3 51136813 51136836 -108462947 + AT_rich Low_complexity Low_complexity 1 23 0 3 975 299 208 115 0 chr3 51136886 51136982 -108462801 + L1MB8 LINE L1 2029 2135 -5199 3 975 529 243 80 7 chr3 51137542 51137679 -108462104 + B1F SINE Alu 2 148 -1 3 975 240 253 38 12 chr3 51137880 51137960 -108461823 + L1MB8 LINE L1 3073 3154 -3852 3 975 198 0 0 0 chr3 51138212 51138234 -108461549 + (A)n Simple_repeat Simple_repeat 1 22 0 3 975 649 154 0 26 chr3 51138325 51138438 -108461345 + B1_Mus2 SINE Alu 22 131 -16 3 975 227 103 26 0 chr3 51138448 51138487 -108461296 + (TAAA)n Simple_repeat Simple_repeat 4 43 0 3 975 388 250 0 0 chr3 51138488 51138560 -108461223 + B3A SINE B2 49 120 -78 3 975 232 196 0 35 chr3 51138563 51138621 -108461162 + G-rich Low_complexity Low_complexity 2 57 0 3 975 349 276 10 48 chr3 51138641 51138744 -108461039 + MTD LTR MaLR 193 291 -128 3 975 396 255 110 67 chr3 51138784 51139200 -108460583 + L1MB8 LINE L1 4363 4766 -2240 3 975 390 282 23 12 chr3 51139200 51139286 -108460497 - MER81 DNA AcHobo -5 109 23 3 975 381 229 209 0 chr3 51139724 51139829 -108459954 + RSINE1 SINE B4 4 130 -35 3 975 302 258 10 70 chr3 51139868 51139968 -108459815 + L1MB8 LINE L1 5197 5290 -1716 3 975 323 161 0 35 chr3 51140029 51140087 -108459696 + B1_Mur4 SINE Alu 5 60 -90 3 975 247 188 111 65 chr3 51140083 51140128 -108459655 + RLTR25B LTR ERVK 397 445 -583 3 975 1638 46 0 5 chr3 51140128 51140324 -108459459 + B2_Mm2 SINE B2 1 195 0 3 975 247 188 111 65 chr3 51140324 51140386 -108459397 + RLTR25B LTR ERVK 446 509 -519 3 975 692 118 0 19 chr3 51140386 51140428 -108459355 + B1_Mus2 SINE Alu 45 146 -1 3 975 447 212 129 0 chr3 51140430 51140562 -108459221 + L1MB1 LINE L1 5815 5963 -226 3 975 285 194 30 0 chr3 51140615 51140682 -108459101 + L1MB1 LINE L1 6049 6117 -51 3 975 265 261 44 18 chr3 51140772 51140885 -108458898 + L1MB8 LINE L1 5405 5520 -1486 3 975 864 304 116 43 chr3 51141004 51141627 -108458156 + L1MB8 LINE L1 6241 6908 -131 3 975 1055 101 7 13 chr3 51141832 51141983 -108457800 + B1_Mur4 SINE Alu 1 150 0 3 975 1052 227 106 86 chr3 51142087 51142452 -108457331 + L1MB8 LINE L1 5650 6014 -164 3 975 307 250 0 0 chr3 51142452 51142520 -108457263 - tRNA-Ala-GCA tRNA tRNA -3 72 5 3 975 1052 227 106 86 chr3 51142520 51142664 -108457119 + L1MB8 LINE L1 6015 6169 -9 3 975 645 155 7 53 chr3 51142915 51142959 -108456824 + B1_Mus2 SINE Alu 5 46 -101 3 975 279 0 0 0 chr3 51142959 51142990 -108456793 + (G)n Simple_repeat Simple_repeat 1 31 0 3 975 645 155 7 53 chr3 51142990 51143095 -108456688 + B1_Mus2 SINE Alu 47 147 0 3 975 21 71 0 0 chr3 51144011 51144053 -108455730 + GC_rich Low_complexity Low_complexity 1 42 0 3 975 23 0 0 0 chr3 51144217 51144240 -108455543 + GC_rich Low_complexity Low_complexity 1 23 0 3 975 24 0 0 70 chr3 51145274 51145317 -108454466 + GC_rich Low_complexity Low_complexity 1 40 0 4 975 31 99 0 0 chr3 51145402 51145503 -108454280 + GC_rich Low_complexity Low_complexity 1 101 0 4 975 824 201 43 57 chr3 51146715 51146926 -108452857 + B3 SINE B2 2 209 -7 4 975 845 142 173 0 chr3 51146970 51147132 -108452651 + B2_Mm2 SINE B2 1 190 -5 4 975 374 316 8 104 chr3 51147154 51147394 -108452389 + MLT1H LTR MaLR 105 321 -228 4 975 3109 172 28 16 chr3 51147412 51147980 -108451803 + RMER15 LTR ERVL 1 575 0 4 975 304 308 27 55 chr3 51147996 51148106 -108451677 - PB1D10 SINE Alu -1 116 10 4 975 1511 48 21 0 chr3 51148316 51148505 -108451278 + B2_Mm1a SINE B2 1 193 0 4 975 2732 60 0 30 chr3 51148676 51149040 -108450743 - L1_Mus1 LINE L1 0 6567 6215 4 975 1265 96 21 16 chr3 51149102 51149293 -108450490 + B2_Mm2 SINE B2 1 192 -3 4 975 930 115 13 63 chr3 51149317 51149372 -108450411 + B1_Mur4 SINE Alu 1 55 -95 4 975 1092 73 0 0 chr3 51149372 51149509 -108450274 + B1_Mus1 SINE Alu 1 137 -11 4 975 870 90 0 0 chr3 51149509 51149643 -108450140 + (GAA)n Simple_repeat Simple_repeat 1 134 0 4 975 930 115 13 63 chr3 51149643 51149744 -108450039 + B1_Mur4 SINE Alu 56 149 -1 4 975 636 149 73 16 chr3 51149756 51149879 -108449904 + B1_Mur1 SINE Alu 17 146 -3 4 975 445 215 25 206 chr3 51149879 51149955 -108449828 + B4 SINE B4 102 264 -28 4 975 334 146 0 0 chr3 51150087 51150142 -108449641 - B3A SINE B2 -143 55 1 4 975 230 95 0 23 chr3 51150706 51150749 -108449034 + (CAAAAA)n Simple_repeat Simple_repeat 2 43 0 4 975 2861 32 35 0 chr3 51150754 51151095 -108448688 - L1Md_T LINE L1 0 6582 6230 4 975 1145 159 119 0 chr3 51151304 51151505 -108448278 + URR1B DNA MER1_type 1 225 0 4 975 713 70 0 10 chr3 51151523 51151624 -108448159 + (TTTC)n Simple_repeat Simple_repeat 4 103 0 4 975 984 186 104 0 chr3 51151625 51151808 -108447975 - B3 SINE B2 -14 202 1 4 975 288 261 93 59 chr3 51151963 51152081 -108447702 - RSINE1 SINE B4 0 165 44 4 975 233 325 48 36 chr3 51152110 51152193 -108447590 - RSINE1 SINE B4 -78 87 4 4 975 581 274 0 30 chr3 51152214 51152346 -108447437 - B1_Mur1 SINE Alu -21 128 1 4 975 374 221 39 85 chr3 51152506 51152534 -108447249 - B4A SINE B4 -40 252 107 4 975 387 212 64 56 chr3 51152534 51152659 -108447124 - B1F SINE Alu -2 147 22 4 975 439 268 177 8 chr3 51153113 51153237 -108446546 + RSINE1 SINE B4 4 148 -17 4 975 207 69 0 0 chr3 51153254 51153283 -108446500 + (TGAA)n Simple_repeat Simple_repeat 2 30 0 4 975 839 239 0 0 chr3 51153283 51153442 -108446341 - B3 SINE B2 -57 159 1 4 975 712 275 112 21 chr3 51153442 51153651 -108446132 - Arthur1 DNA Tip100 -289 3658 3428 4 975 571 231 52 49 chr3 51153651 51153811 -108445972 + B3 SINE B2 1 163 -35 4 975 414 0 0 0 chr3 51153818 51153864 -108445919 + (CA)n Simple_repeat Simple_repeat 1 46 0 4 975 783 170 52 7 chr3 51153955 51154091 -108445692 - B1_Mur4 SINE Alu 0 150 9 4 975 2265 154 88 17 chr3 51154073 51154482 -108445301 - RMER15 LTR ERVL -78 497 60 4 975 534 304 35 53 chr3 51154578 51154804 -108444979 - RMER15 LTR ERVL -3 572 351 4 975 255 329 52 58 chr3 51155163 51155318 -108444465 - Arthur1 DNA Tip100 -3765 182 29 4 975 222 37 0 0 chr3 51155578 51155605 -108444178 + (TG)n Simple_repeat Simple_repeat 1 27 0 4 975 312 27 0 0 chr3 51155631 51155668 -108444115 + (TG)n Simple_repeat Simple_repeat 2 38 0 4 975 2605 37 74 3 chr3 51155798 51156121 -108443662 - ORR1A1 LTR MaLR 0 346 1 4 975 614 230 52 73 chr3 51156199 51156391 -108443392 - RMER5 LTR ERV1 -7 527 340 4 975 584 264 126 22 chr3 51156436 51156618 -108443165 - B3 SINE B2 -5 211 11 4 975 447 323 35 5 chr3 51156639 51156838 -108442945 - B3 SINE B2 -11 205 1 4 975 1357 237 58 15 chr3 51156838 51157164 -108442619 - RMER5 LTR ERV1 -180 354 15 4 975 427 114 50 12 chr3 51157291 51157368 -108442415 - PB1D9 SINE Alu -8 112 33 4 975 498 279 130 47 chr3 51157368 51157537 -108442246 + B3 SINE B2 2 184 -11 4 975 892 210 0 6 chr3 51157669 51157827 -108441956 - B3 SINE B2 -2 214 58 4 975 1424 84 16 0 chr3 51158025 51158216 -108441567 + B2_Mm2 SINE B2 1 194 -1 4 975 960 92 8 0 chr3 51158216 51158347 -108441436 + B1_Mus2 SINE Alu 15 146 -1 4 975 1078 222 5 0 chr3 51158647 51158845 -108440938 + B3 SINE B2 2 200 -16 4 975 645 128 0 0 chr3 51158857 51158959 -108440824 + (TAGA)n Simple_repeat Simple_repeat 1 102 0 4 975 1398 81 5 11 chr3 51159077 51159264 -108440519 + B2_Mm1a SINE B2 1 186 -7 4 975 345 351 36 21 chr3 51159359 51159459 -108440324 + MIR SINE MIR 13 112 -150 4 975 201 39 0 0 chr3 51159459 51159485 -108440298 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 4 975 345 351 36 21 chr3 51159485 51159576 -108440207 + MIR SINE MIR 113 207 -55 4 975 337 222 113 113 chr3 51159612 51159754 -108440029 - B1F1 SINE Alu -2 147 6 4 975 242 267 104 26 chr3 51159887 51159964 -108439819 + MIR SINE MIR 110 192 -70 4 975 418 134 75 0 chr3 51159967 51160034 -108439749 - B1F1 SINE Alu -53 96 25 4 975 414 0 0 0 chr3 51160071 51160117 -108439666 + (TG)n Simple_repeat Simple_repeat 2 47 0 4 975 369 0 0 0 chr3 51160132 51160173 -108439610 + (CAGA)n Simple_repeat Simple_repeat 4 44 0 4 975 1053 150 0 0 chr3 51160232 51160412 -108439371 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 4 975 902 110 66 7 chr3 51160474 51160611 -108439172 - B1_Mur4 SINE Alu -1 149 5 4 975 610 305 100 0 chr3 51160627 51160837 -108438946 - B4A SINE B4 -60 232 2 4 975 352 221 116 0 chr3 51160992 51161078 -108438705 - RSINE1 SINE B4 -57 108 13 4 975 371 73 18 0 chr3 51161450 51161505 -108438278 + (TG)n Simple_repeat Simple_repeat 1 56 0 4 975 281 300 0 0 chr3 51161515 51161585 -108438198 - RSINE1 SINE B4 -44 121 52 4 975 1109 97 0 0 chr3 51161663 51161808 -108437975 + B1_Mus1 SINE Alu 4 148 0 4 975 648 0 0 0 chr3 51162275 51162347 -108437436 + tRNA-Pro-CCA tRNA tRNA 1 72 -3 4 975 189 0 0 0 chr3 51162493 51162514 -108437269 + (A)n Simple_repeat Simple_repeat 1 21 0 4 975 207 0 0 0 chr3 51162514 51162537 -108437246 + (GGGA)n Simple_repeat Simple_repeat 3 25 0 4 975 652 0 0 0 chr3 51163328 51163400 -108436383 + tRNA-Pro-CCY tRNA tRNA 1 72 -3 4 975 323 262 0 12 chr3 51163648 51163729 -108436054 - RSINE1 SINE B4 -36 129 50 4 975 23 0 0 0 chr3 51163955 51163978 -108435805 + AT_rich Low_complexity Low_complexity 1 23 0 4 975 324 161 24 12 chr3 51163979 51164061 -108435722 + (TCTA)n Simple_repeat Simple_repeat 3 85 0 4 975 279 0 0 0 chr3 51164084 51164115 -108435668 + (TG)n Simple_repeat Simple_repeat 2 32 0 4 975 208 130 51 25 chr3 51164228 51164307 -108435476 + T-rich Low_complexity Low_complexity 2 82 0 4 975 551 188 136 8 chr3 51164310 51164428 -108435355 - B1_Mus2 SINE Alu 0 147 15 4 975 185 0 40 0 chr3 51164440 51164465 -108435318 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 4 975 1425 149 54 96 chr3 51164630 51164963 -108434820 - RMER10B LTR ERVL 0 398 80 4 975 215 103 0 25 chr3 51165004 51165044 -108434739 + (AGGGGG)n Simple_repeat Simple_repeat 5 43 0 4 975 373 211 13 13 chr3 51165045 51165122 -108434661 + RMER15-int LTR ERVL 655 731 -4268 4 975 812 245 250 11 chr3 51165221 51165489 -108434294 + ORR1E LTR MaLR 26 357 -2 4 975 1946 116 137 58 chr3 51165734 51165966 -108433817 - ORR1B1 LTR MaLR 0 394 163 4 975 1051 116 0 7 chr3 51165966 51166114 -108433669 + B1_Mus1 SINE Alu 2 148 0 4 975 1946 116 137 58 chr3 51166114 51166246 -108433537 - ORR1B1 LTR MaLR -232 162 1 4 975 2081 165 63 42 chr3 51166455 51166623 -108433160 - MTC LTR MaLR 0 421 245 4 975 1865 131 112 9 chr3 51166623 51166954 -108432829 - ORR1B2 LTR MaLR 0 367 3 4 975 2081 165 63 42 chr3 51166954 51167093 -108432690 - MTC LTR MaLR -177 244 107 4 975 1228 131 15 20 chr3 51167093 51167288 -108432495 + B2_Mm2 SINE B2 2 195 0 4 975 1227 43 0 0 chr3 51167289 51167430 -108432353 + B1_Mus2 SINE Alu 1 141 -6 4 975 588 29 0 0 chr3 51167432 51167502 -108432281 + (GA)n Simple_repeat Simple_repeat 1 70 0 4 975 2081 165 63 42 chr3 51167502 51167598 -108432185 - MTC LTR MaLR -315 106 4 4 975 679 203 0 29 chr3 51168164 51168473 -108431310 + CT-rich Low_complexity Low_complexity 1 300 0 4 975 338 242 49 24 chr3 51168640 51168763 -108431020 + RMER15-int LTR ERVL 2379 2504 -2495 4 975 2414 267 96 60 chr3 51168874 51169850 -108429933 + RMER15-int LTR ERVL 2751 3761 -1238 4 975 3226 133 69 94 chr3 51169937 51170275 -108429508 - RMER6A LTR ERVK -34 722 345 4 975 2202 101 6 66 chr3 51170275 51170625 -108429158 - ORR1A4 LTR MaLR 0 329 1 4 975 3226 133 69 94 chr3 51170625 51170964 -108428819 - RMER6A LTR ERVK -412 344 62 4 975 449 276 56 56 chr3 51171216 51171412 -108428371 + B3A SINE B2 1 196 -2 4 975 581 260 8 45 chr3 51171478 51171611 -108428172 + RSINE1 SINE B4 1 128 -37 4 975 785 229 7 0 chr3 51171652 51171792 -108427991 - B1_Mur1 SINE Alu 0 149 9 4 975 643 183 24 55 chr3 51171809 51171936 -108427847 - B1_Mur1 SINE Alu -5 144 22 4 975 1771 285 67 6 chr3 51172013 51172331 -108427452 + RMER15-int LTR ERVL 4161 4503 -496 4 975 1249 199 280 9 chr3 51172331 51172660 -108427123 - MTD LTR MaLR 0 419 2 4 975 1771 285 67 6 chr3 51172660 51172877 -108426906 + RMER15-int LTR ERVL 4504 4728 -271 4 975 2698 139 28 5 chr3 51172926 51173063 -108426720 + RMER20A LTR ERVK 1 140 -376 4 975 189 0 0 0 chr3 51173063 51173084 -108426699 + (CA)n Simple_repeat Simple_repeat 2 22 0 4 975 2698 139 28 5 chr3 51173084 51173378 -108426405 + RMER20A LTR ERVK 141 441 -75 4 975 508 242 32 132 chr3 51173400 51173619 -108426164 + RMER15-int LTR ERVL 4777 4973 -26 4 975 314 239 188 69 chr3 51173619 51173763 -108426020 + RMER15 LTR ERVL 1 161 -414 4 975 870 83 0 0 chr3 51173769 51173889 -108425894 + (TTTTG)n Simple_repeat Simple_repeat 2 121 0 4 975 1116 75 0 0 chr3 51173893 51174027 -108425756 - B1_Mus2 SINE Alu -13 134 1 4 975 344 287 111 48 chr3 51174602 51174851 -108424932 - MER47B DNA MER2_type -16 402 112 4 975 405 0 0 0 chr3 51174851 51174896 -108424887 + (CA)n Simple_repeat Simple_repeat 2 46 0 4 975 313 286 151 63 chr3 51174896 51174955 -108424828 - MER47B DNA MER2_type -307 111 52 4 975 311 136 0 0 chr3 51175123 51175167 -108424616 + L1MB4 LINE L1 6068 6111 -69 4 975 298 220 20 0 chr3 51175169 51175269 -108424514 + (TA)n Simple_repeat Simple_repeat 2 103 0 4 975 1374 72 33 0 chr3 51175372 51175552 -108424231 - B2_Mm2 SINE B2 -8 187 2 5 975 1026 94 113 0 chr3 51175552 51175711 -108424072 - B2_Mm1t SINE B2 -15 178 2 5 975 443 261 24 150 chr3 51175728 51175895 -108423888 + RSINE1 SINE B4 3 148 -17 5 975 813 186 7 0 chr3 51175941 51176081 -108423702 + B1_Mus2 SINE Alu 5 145 -2 5 975 197 200 0 35 chr3 51176376 51176433 -108423350 + G-rich Low_complexity Low_complexity 6 60 0 5 975 401 231 69 97 chr3 51176436 51176580 -108423203 - MLT1B LTR MaLR -240 150 11 5 975 270 0 0 0 chr3 51176628 51176658 -108423125 + (TTTG)n Simple_repeat Simple_repeat 3 32 0 5 975 392 210 86 0 chr3 51176761 51176842 -108422941 - ID_B1 SINE B4 -34 190 103 5 975 221 328 14 43 chr3 51176836 51176906 -108422877 - ID4_ SINE ID -11 72 5 5 975 439 156 168 24 chr3 51177014 51177133 -108422650 - B1_Mur3 SINE Alu -1 148 17 5 975 832 134 97 63 chr3 51177621 51177796 -108421987 - B2_Mm2 SINE B2 -1 194 14 5 975 243 0 0 0 chr3 51177813 51177840 -108421943 + (TA)n Simple_repeat Simple_repeat 2 28 0 5 975 723 282 16 16 chr3 51177850 51178041 -108421742 - B3A SINE B2 -6 192 2 5 975 1190 55 7 0 chr3 51178206 51178352 -108421431 + B1_Mm SINE Alu 1 147 0 5 975 183 85 64 0 chr3 51178352 51178399 -108421384 + (CAAAAA)n Simple_repeat Simple_repeat 6 55 0 5 975 576 265 0 8 chr3 51178786 51178919 -108420864 + MTD LTR MaLR 53 184 -235 5 975 575 239 227 0 chr3 51179314 51179490 -108420293 - B3 SINE B2 0 216 1 5 975 342 0 0 0 chr3 51179504 51179542 -108420241 + (TTGG)n Simple_repeat Simple_repeat 2 39 0 5 975 619 248 21 7 chr3 51179542 51179677 -108420106 - B1_Mur2 SINE Alu -11 138 1 5 975 232 275 49 107 chr3 51179574 51179696 -108420087 - MT2B LTR ERVL -344 257 143 5 975 1165 49 21 0 chr3 51179748 51179891 -108419892 - B1_Mm SINE Alu 0 147 2 5 975 769 239 108 62 chr3 51179975 51180234 -108419549 + RLTR18B LTR ERVK 24 294 -218 5 975 699 98 55 0 chr3 51180299 51180462 -108419321 + (TG)n Simple_repeat Simple_repeat 2 173 0 5 975 666 278 89 0 chr3 51180474 51180654 -108419129 + ID_B1 SINE B4 28 223 -1 5 975 1030 116 81 6 chr3 51180789 51180963 -108418820 - B2_Mm2 SINE B2 -8 187 1 5 975 207 0 0 0 chr3 51181193 51181216 -108418567 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 5 975 1088 89 0 14 chr3 51181235 51181383 -108418400 - B1_Mus2 SINE Alu 0 147 2 5 975 1237 112 28 0 chr3 51181404 51181582 -108418201 + ORR1A3 LTR MaLR 136 318 -8 5 975 1006 100 0 7 chr3 51181587 51181728 -108418055 + B1_Mur4 SINE Alu 10 149 -1 5 975 277 384 13 40 chr3 51182116 51182417 -108417366 + L1ME1 LINE L1 5878 6170 -9 5 975 213 114 29 0 chr3 51182595 51182630 -108417153 + (CCCTG)n Simple_repeat Simple_repeat 1 36 0 5 975 975 248 0 10 chr3 51182802 51183010 -108416773 - B3 SINE B2 -10 206 1 5 975 297 0 0 0 chr3 51183043 51183076 -108416707 + (TG)n Simple_repeat Simple_repeat 2 34 0 5 975 738 265 39 19 chr3 51183117 51183325 -108416458 + B3 SINE B2 5 216 0 5 975 846 279 29 5 chr3 51183332 51183537 -108416246 + B3 SINE B2 1 210 -6 5 975 489 317 86 6 chr3 51183578 51183740 -108416043 + ORR1E LTR MaLR 8 182 -177 5 975 549 171 179 46 chr3 51183726 51183914 -108415869 - B3 SINE B2 0 195 1 5 975 413 237 61 20 chr3 51183978 51184077 -108415706 + ORR1E LTR MaLR 277 379 0 5 975 28 0 0 0 chr3 51184219 51184247 -108415536 + AT_rich Low_complexity Low_complexity 1 28 0 5 975 1635 21 21 0 chr3 51184485 51184674 -108415109 + B2_Mm1a SINE B2 1 193 0 5 975 420 195 115 0 chr3 51184771 51184858 -108414925 - PB1 SINE Alu 0 127 31 5 975 301 242 64 86 chr3 51184780 51184920 -108414863 - MT2B2 LTR ERVL -321 263 127 5 975 351 60 0 0 chr3 51185039 51185089 -108414694 + (TC)n Simple_repeat Simple_repeat 1 50 0 5 975 715 190 72 7 chr3 51185114 51185252 -108414531 - B1_Mur1 SINE Alu 0 149 3 5 975 512 287 23 8 chr3 51185411 51185541 -108414242 - RSINE1 SINE B4 -31 134 3 5 975 698 149 53 0 chr3 51185757 51185871 -108413912 + B1_Mur1 SINE Alu 11 130 -19 5 975 315 0 0 0 chr3 51185878 51185913 -108413870 + (TG)n Simple_repeat Simple_repeat 1 35 0 5 975 288 0 0 0 chr3 51185913 51185944 -108413839 + (GA)n Simple_repeat Simple_repeat 1 32 0 5 975 549 55 0 0 chr3 51186001 51186074 -108413709 + (CA)n Simple_repeat Simple_repeat 1 73 0 5 975 481 302 63 0 chr3 51186341 51186467 -108413316 + ID_B1 SINE B4 90 223 -1 5 975 320 138 15 0 chr3 51186467 51186532 -108413251 + GA-rich Low_complexity Low_complexity 1 66 0 5 975 238 270 63 0 chr3 51186550 51186613 -108413170 + tRNA-Ala-GCA tRNA tRNA 2 68 -7 5 975 594 75 0 0 chr3 51186773 51186853 -108412930 + (TATG)n Simple_repeat Simple_repeat 4 83 0 5 975 558 244 16 16 chr3 51186857 51186986 -108412797 - RSINE1 SINE B4 -35 130 2 5 975 436 52 0 33 chr3 51187894 51187954 -108411829 + RMER10B LTR ERVL 2 59 -339 5 975 690 201 68 68 chr3 51187959 51188178 -108411605 - MTD LTR MaLR 0 419 201 5 975 417 184 9 18 chr3 51188178 51188289 -108411494 + CT-rich Low_complexity Low_complexity 1 110 0 5 975 713 168 0 0 chr3 51188304 51188417 -108411366 - B1_Mus1 SINE Alu -1 147 35 5 975 450 252 34 54 chr3 51188428 51188575 -108411208 - MTD LTR MaLR -205 216 73 5 975 317 120 0 74 chr3 51188697 51188751 -108411032 - HAL1-3A_ME LINE L1 -833 2025 1976 5 975 360 167 0 0 chr3 51188770 51188842 -108410941 + (TG)n Simple_repeat Simple_repeat 2 73 0 5 975 1464 64 0 5 chr3 51189093 51189281 -108410502 - B2_Mm2 SINE B2 -2 193 7 5 975 289 264 176 0 chr3 51189309 51189400 -108410383 + ORR1E LTR MaLR 41 147 -212 5 975 353 253 0 0 chr3 51189429 51189508 -108410275 - ID4 SINE ID 0 83 5 5 975 206 269 0 0 chr3 51189626 51189678 -108410105 + G-rich Low_complexity Low_complexity 1 52 0 5 975 354 225 112 0 chr3 51189848 51189928 -108409855 - B3A SINE B2 -109 89 1 5 975 214 191 128 0 chr3 51190103 51190150 -108409633 + B4A SINE B4 83 135 -157 5 975 551 112 280 0 chr3 51190111 51190218 -108409565 + B1_Mus2 SINE Alu 11 147 0 5 975 569 234 90 30 chr3 51190277 51190300 -108409483 - B2_Mm2 SINE B2 -18 177 155 5 975 299 85 21 0 chr3 51190300 51190347 -108409436 + (TATG)n Simple_repeat Simple_repeat 1 48 0 5 975 569 234 90 30 chr3 51190347 51190490 -108409293 - B2_Mm2 SINE B2 -41 154 2 5 975 463 198 18 62 chr3 51191106 51191219 -108408564 - PB1D10 SINE Alu -9 108 1 5 975 1128 101 0 0 chr3 51191426 51191574 -108408209 - B1_Mus1 SINE Alu 0 148 1 5 975 442 232 33 52 chr3 51191621 51191751 -108408032 + B1F1 SINE Alu 2 117 0 5 975 252 209 65 75 chr3 51192187 51192280 -108407503 + PB1D7 SINE Alu 2 93 -27 5 975 339 319 21 0 chr3 51193347 51193441 -108406342 - ID_B1 SINE B4 -7 217 122 5 975 323 269 11 54 chr3 51193570 51193677 -108406106 + B1_Mur2 SINE Alu 7 117 -10 5 975 257 0 30 0 chr3 51193677 51193710 -108406073 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 5 975 297 29 25 138 chr3 51193726 51193806 -108405977 + (CAAAC)n Simple_repeat Simple_repeat 3 73 0 5 975 679 185 136 37 chr3 51193965 51194095 -108405688 + B3 SINE B2 1 141 -75 5 975 185 0 40 0 chr3 51194095 51194120 -108405663 + (TG)n Simple_repeat Simple_repeat 1 26 0 5 975 679 185 136 37 chr3 51194120 51194180 -108405603 + B3 SINE B2 142 210 -6 5 975 975 127 110 0 chr3 51194655 51194828 -108404955 - B2_Mm2 SINE B2 -3 192 1 5 975 364 253 13 0 chr3 51195009 51195088 -108404695 + ID_B1 SINE B4 82 161 -63 5 975 359 302 8 41 chr3 51195088 51195130 -108404653 + PB1D10 SINE Alu 1 117 0 5 975 260 250 24 84 chr3 51195309 51195327 -108404456 + MT2B2 LTR ERVL 150 224 -357 5 975 343 210 0 0 chr3 51195327 51195389 -108404394 + B1_Mur3 SINE Alu 6 67 -82 5 975 306 0 0 0 chr3 51195395 51195429 -108404354 + (TG)n Simple_repeat Simple_repeat 2 35 0 5 975 682 70 109 10 chr3 51195429 51195525 -108404258 + B2_Mm2 SINE B2 5 111 -84 5 975 293 284 0 36 chr3 51195602 51195686 -108404097 - B1_Mur1 SINE Alu -6 143 63 5 975 1325 62 67 0 chr3 51196449 51196628 -108403155 + B2_Mm2 SINE B2 1 191 -4 5 975 381 287 0 87 chr3 51196744 51196847 -108402936 - RSINE1 SINE B4 -63 102 9 5 975 236 222 56 0 chr3 51196882 51196936 -108402847 + ID4 SINE ID 22 78 -5 5 975 1156 103 0 0 chr3 51197151 51197306 -108402477 + B2_Mm2 SINE B2 1 155 -40 5 975 351 0 0 0 chr3 51197306 51197345 -108402438 + (TAAA)n Simple_repeat Simple_repeat 3 41 0 5 975 959 226 10 10 chr3 51197541 51197738 -108402045 - B3 SINE B2 0 216 20 5 975 1168 78 0 0 chr3 51197864 51198017 -108401766 + B2_Mm2 SINE B2 9 161 -34 5 975 261 0 0 0 chr3 51198018 51198047 -108401736 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 5 975 539 74 12 0 chr3 51198076 51198157 -108401626 + (GA)n Simple_repeat Simple_repeat 2 83 0 5 975 379 300 54 18 chr3 51198167 51198279 -108401504 + PB1D10 SINE Alu 2 117 0 5 975 944 85 8 0 chr3 51198616 51198746 -108401037 + B1_Mus1 SINE Alu 11 141 -7 5 975 251 278 32 50 chr3 51198749 51198873 -108400910 + ID4 SINE ID 5 132 -20 5 975 220 313 190 9 chr3 51198978 51199094 -108400689 + RSINE1 SINE B4 16 152 -13 5 975 569 124 0 10 chr3 51199140 51199238 -108400545 + (GGGA)n Simple_repeat Simple_repeat 1 97 0 5 975 225 0 0 0 chr3 51199509 51199534 -108400249 + (CAAAG)n Simple_repeat Simple_repeat 2 26 0 6 975 621 208 208 0 chr3 51200949 51201108 -108398675 + ID_B1 SINE B4 24 215 -9 6 975 198 0 0 0 chr3 51201108 51201130 -108398653 + (TGAA)n Simple_repeat Simple_repeat 3 24 0 6 975 528 16 0 0 chr3 51201152 51201213 -108398570 + (TG)n Simple_repeat Simple_repeat 1 61 0 6 975 268 222 0 18 chr3 51201248 51201303 -108398480 - B3A SINE B2 -142 56 3 6 975 1310 96 27 0 chr3 51201331 51201519 -108398264 - B2_Mm1t SINE B2 0 193 1 6 975 440 129 0 0 chr3 51201522 51201592 -108398191 - B1_Mur3 SINE Alu 0 149 80 6 975 294 123 58 10 chr3 51201581 51201650 -108398133 + B1_Mur4 SINE Alu 45 147 -3 6 975 268 267 78 10 chr3 51201601 51201703 -108398080 - PB1D9 SINE Alu -3 117 9 6 975 695 33 11 0 chr3 51202442 51202532 -108397251 + (GAAAA)n Simple_repeat Simple_repeat 2 92 0 6 975 279 133 0 0 chr3 51202532 51202577 -108397206 + (GGA)n Simple_repeat Simple_repeat 2 46 0 6 975 1765 172 65 90 chr3 51203034 51203480 -108396303 + RMER10A LTR ERVL 7 441 -1 6 975 515 237 17 8 chr3 51203571 51203690 -108396093 + B3A SINE B2 1 120 -78 6 975 791 191 178 11 chr3 51203713 51203893 -108395890 + B3 SINE B2 3 212 -4 6 975 1222 77 59 0 chr3 51203921 51204091 -108395692 + B2_Mm2 SINE B2 2 181 -14 6 975 233 135 0 19 chr3 51204146 51204199 -108395584 + (TTTA)n Simple_repeat Simple_repeat 2 53 0 6 975 328 207 83 94 chr3 51204367 51204463 -108395320 + B1_Mur1 SINE Alu 55 149 0 6 975 29 0 0 0 chr3 51204463 51204492 -108395291 + AT_rich Low_complexity Low_complexity 1 29 0 6 975 784 134 78 16 chr3 51204539 51204668 -108395115 - B1_Mur4 SINE Alu -13 137 1 6 975 809 175 22 0 chr3 51205152 51205289 -108394494 - B1_Mur3 SINE Alu -2 147 8 6 975 1364 82 6 0 chr3 51205320 51205503 -108394280 - B2_Mm1a SINE B2 -8 185 2 6 975 1095 83 7 0 chr3 51205517 51205662 -108394121 - B1_Mm SINE Alu 0 147 2 6 975 1097 96 14 0 chr3 51205856 51206002 -108393781 + B1_Mus1 SINE Alu 1 148 0 6 975 192 77 0 0 chr3 51206032 51206058 -108393725 + (A)n Simple_repeat Simple_repeat 1 26 0 6 975 1137 51 83 0 chr3 51206144 51206301 -108393482 + B2_Mm1t SINE B2 2 171 -22 6 975 231 36 0 0 chr3 51206304 51206332 -108393451 + (GAAAA)n Simple_repeat Simple_repeat 2 29 0 6 975 302 156 16 0 chr3 51206871 51206935 -108392848 + CT-rich Low_complexity Low_complexity 2 66 0 6 975 250 257 133 13 chr3 51207295 51207370 -108392413 - MLT1D LTR MaLR -6 674 591 6 975 341 252 54 130 chr3 51207535 51207694 -108392089 - MLT1D LTR MaLR -423 204 59 6 975 474 175 0 12 chr3 51207729 51207810 -108391973 + RLTR23 LTR ERV1 5 84 -346 6 975 795 55 18 0 chr3 51207919 51208021 -108391762 + B1_Mm SINE Alu 34 137 -10 6 975 531 0 0 0 chr3 51208021 51208080 -108391703 + (CAAAA)n Simple_repeat Simple_repeat 2 60 0 6 975 380 231 274 7 chr3 51208214 51208280 -108391503 - RLTR20A LTR ERVK 0 541 473 6 975 558 0 0 0 chr3 51208280 51208342 -108391441 + (CA)n Simple_repeat Simple_repeat 2 63 0 6 975 380 231 274 7 chr3 51208342 51208410 -108391373 - RLTR20A LTR ERVK -69 472 373 6 975 1051 92 43 0 chr3 51208426 51208567 -108391216 + B1_Mus2 SINE Alu 1 147 0 6 975 892 102 100 20 chr3 51208573 51208723 -108391060 - RLTR20C LTR ERVK -370 164 3 6 975 465 243 118 26 chr3 51208729 51208881 -108390902 + RLTR23 LTR ERV1 265 430 0 6 975 1132 66 0 0 chr3 51209200 51209336 -108390447 + B1_Mus2 SINE Alu 1 136 -11 6 975 189 0 0 0 chr3 51209337 51209358 -108390425 + (CAAAA)n Simple_repeat Simple_repeat 3 23 0 6 975 1254 41 0 0 chr3 51209672 51209819 -108389964 + B1_Mus2 SINE Alu 1 147 0 6 975 494 306 91 40 chr3 51210060 51210336 -108389447 - B4A SINE B4 0 292 3 6 975 385 331 3 2 chr3 51210816 51210941 -108388842 - PB1D10 SINE Alu -19 128 3 6 975 378 287 11 0 chr3 51210959 51211053 -108388730 + PB1D9 SINE Alu 14 108 -12 6 975 556 234 47 24 chr3 51211053 51211180 -108388603 - B1_Mur2 SINE Alu -6 143 14 6 975 303 28 0 0 chr3 51211624 51211660 -108388123 + (TG)n Simple_repeat Simple_repeat 1 36 0 6 975 659 224 16 0 chr3 51211927 51212052 -108387731 + B3A SINE B2 1 127 -71 6 975 360 252 40 0 chr3 51212241 51212340 -108387443 - PB1D10 SINE Alu -7 110 8 6 975 237 290 72 41 chr3 51212371 51212468 -108387315 - MIRm SINE MIR -123 153 54 6 975 285 208 175 10 chr3 51213440 51213537 -108386246 - PB1D10 SINE Alu 0 117 5 6 975 1286 118 16 0 chr3 51213557 51213743 -108386040 + B2_Mm2 SINE B2 1 189 -6 6 975 849 193 193 0 chr3 51214090 51214271 -108385512 - B3 SINE B2 0 216 1 6 975 1199 80 50 22 chr3 51214310 51214490 -108385293 + B2_Mm2 SINE B2 2 186 -9 6 975 558 179 147 32 chr3 51214591 51214781 -108385002 - B3 SINE B2 -3 213 2 6 975 288 0 0 0 chr3 51214811 51214843 -108384940 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 6 975 1169 37 0 0 chr3 51214843 51214977 -108384806 - B1_Mm SINE Alu -13 134 1 6 975 1233 115 16 11 chr3 51214982 51215166 -108384617 - B2_Mm2 SINE B2 -10 185 1 6 975 1173 54 7 0 chr3 51215197 51215344 -108384439 - B1_Mus1 SINE Alu 0 148 1 6 975 526 305 15 31 chr3 51215458 51215654 -108384129 - B3A SINE B2 -3 195 3 6 975 955 132 69 32 chr3 51215772 51215960 -108383823 - B2_Mm2 SINE B2 0 195 1 6 975 518 266 41 27 chr3 51215992 51216139 -108383644 + B1F SINE Alu 1 149 0 6 975 658 262 64 0 chr3 51216154 51216295 -108383488 + RSINE1 SINE B4 12 161 -4 6 975 285 263 37 0 chr3 51217265 51217374 -108382409 - ID_B1 SINE B4 -87 205 83 6 975 762 256 52 6 chr3 51217678 51217851 -108381932 + B3A SINE B2 2 182 -16 6 975 263 268 70 0 chr3 51217907 51217978 -108381805 + PB1D10 SINE Alu 23 98 -19 6 975 1239 48 0 0 chr3 51218242 51218387 -108381396 + B1_Mus1 SINE Alu 2 146 -2 6 975 266 304 66 9 chr3 51218510 51218646 -108381137 - B3A SINE B2 -6 210 2 6 975 582 246 8 32 chr3 51218677 51218803 -108380980 - RSINE1 SINE B4 -38 127 5 6 975 331 174 0 67 chr3 51218862 51218952 -108380831 + B1_Mur3 SINE Alu 62 148 -1 6 975 204 245 0 0 chr3 51220021 51220074 -108379709 + GA-rich Low_complexity Low_complexity 2 54 0 6 975 22 0 0 0 chr3 51220479 51220501 -108379282 + GC_rich Low_complexity Low_complexity 1 22 0 6 975 324 120 0 0 chr3 51221457 51221507 -108378276 + (T)n Simple_repeat Simple_repeat 1 50 0 6 975 948 159 16 54 chr3 51221517 51221703 -108378080 + B2_Mm2 SINE B2 2 180 -15 6 975 541 188 17 67 chr3 51221856 51221976 -108377807 - PB1D7 SINE Alu 0 120 7 6 975 216 294 217 23 chr3 51221867 51221996 -108377787 - B4 SINE B4 -71 221 68 6 975 507 202 31 21 chr3 51222015 51222111 -108377672 - RSINE1 SINE B4 -33 132 36 6 975 654 217 28 7 chr3 51222113 51222257 -108377526 + B1_Mur2 SINE Alu 1 147 -2 6 975 261 0 0 0 chr3 51222284 51222313 -108377470 + (T)n Simple_repeat Simple_repeat 1 29 0 6 975 342 0 0 0 chr3 51222610 51222648 -108377135 + (TG)n Simple_repeat Simple_repeat 1 38 0 6 975 827 60 0 25 chr3 51222729 51222848 -108376935 + B2_Mm1a SINE B2 78 193 0 6 975 468 297 8 8 chr3 51222945 51223064 -108376719 - PB1D7 SINE Alu 0 120 2 6 975 245 344 75 75 chr3 51223064 51223095 -108376688 - ID_B1 SINE B4 0 224 11 6 975 253 246 16 47 chr3 51223095 51223159 -108376624 - ID4_ SINE ID -11 72 11 6 975 857 288 129 27 chr3 51223209 51223759 -108376024 - L1MD2 LINE L1 -16 6343 5736 6 975 531 271 58 29 chr3 51223883 51224020 -108375763 - RSINE1 SINE B4 -22 143 3 6 975 297 232 0 163 chr3 51224223 51224321 -108375462 - B1_Mm SINE Alu 0 150 66 6 975 1124 65 0 0 chr3 51224659 51224798 -108374985 + B1_Mus1 SINE Alu 1 139 -9 6 975 216 0 0 0 chr3 51224798 51224822 -108374961 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 6 975 323 277 46 114 chr3 51225066 51225078 -108374705 - B4 SINE B4 -64 228 160 6 975 770 159 15 0 chr3 51225078 51225210 -108374573 - B1_Mur4 SINE Alu -8 142 9 6 975 411 185 16 122 chr3 51225105 51225228 -108374555 - MT2B LTR ERVL -337 264 155 6 975 323 277 46 114 chr3 51225228 51225241 -108374542 - B4 SINE B4 -64 159 66 6 975 1526 43 37 0 chr3 51225498 51225686 -108374097 - B2_Mm2 SINE B2 0 195 1 6 975 607 189 3 40 chr3 51225706 51225832 -108373951 - B3 SINE B2 -73 120 1 6 975 518 236 6 101 chr3 51225868 51226047 -108373736 - RSINE1 SINE B4 -2 163 2 6 975 579 131 3 5 chr3 51226120 51226226 -108373557 + MTD LTR MaLR 267 419 0 6 975 630 184 50 35 chr3 51226226 51226365 -108373418 + MTE2a LTR MaLR 239 379 0 6 975 514 218 0 76 chr3 51226365 51226477 -108373306 - RCHARR1 DNA MER1_type -202 772 672 6 975 333 152 0 43 chr3 51226475 51226544 -108373239 - RCHARR1 DNA MER1_type -415 559 494 6 975 707 306 35 58 chr3 51226558 51226772 -108373011 - RCHARR1 DNA MER1_type -679 295 81 6 975 752 191 131 50 chr3 51226772 51226971 -108372812 - B3 SINE B2 0 216 2 6 975 707 306 35 58 chr3 51226971 51227013 -108372770 - RCHARR1 DNA MER1_type -894 80 45 6 975 624 262 60 27 chr3 51227076 51227225 -108372558 + RSINE1 SINE B4 8 161 -4 6 975 26 30 0 0 chr3 51227225 51227258 -108372525 + AT_rich Low_complexity Low_complexity 1 33 0 6 975 330 26 0 0 chr3 51227386 51227425 -108372358 + (TTTC)n Simple_repeat Simple_repeat 2 40 0 6 975 1168 34 7 40 chr3 51227447 51227599 -108372184 + B1_Mm SINE Alu 1 147 0 6 975 228 282 67 56 chr3 51227620 51227710 -108372073 + PB1D10 SINE Alu 13 103 -14 6 975 508 276 95 40 chr3 51227744 51227997 -108371786 + L1MA5 LINE L1 6004 6270 -30 7 975 434 190 83 33 chr3 51228058 51228178 -108371605 + B1F SINE Alu 23 148 -1 7 975 343 152 17 0 chr3 51228194 51228253 -108371530 + PB1D9 SINE Alu 24 83 -37 7 975 885 141 65 76 chr3 51228343 51228527 -108371256 - B2_Mm2 SINE B2 -12 183 2 7 975 27 49 0 0 chr3 51228527 51228568 -108371215 + AT_rich Low_complexity Low_complexity 1 41 0 7 975 1041 44 73 0 chr3 51228572 51228709 -108371074 + B1_Mm SINE Alu 1 147 0 7 975 216 0 0 0 chr3 51228709 51228733 -108371050 + (A)n Simple_repeat Simple_repeat 1 24 0 7 975 306 0 0 0 chr3 51228733 51228767 -108371016 + (TA)n Simple_repeat Simple_repeat 2 35 0 7 975 727 222 106 45 chr3 51228934 51229132 -108370651 + B3 SINE B2 2 211 -5 7 975 231 170 0 0 chr3 51229219 51229266 -108370517 + T-rich Low_complexity Low_complexity 1 47 0 7 975 386 194 121 10 chr3 51229266 51229365 -108370418 - PB1D9 SINE Alu 0 120 11 7 975 1075 83 147 6 chr3 51229718 51229888 -108369895 + B2_Mm2 SINE B2 2 195 0 7 975 310 329 130 14 chr3 51229988 51230195 -108369588 + L2a LINE L2 3191 3421 -5 7 975 1433 38 21 21 chr3 51230326 51230354 -108369429 - B2_Mm1t SINE B2 -4 189 161 7 975 198 0 0 0 chr3 51230354 51230376 -108369407 + (TTTA)n Simple_repeat Simple_repeat 3 24 0 7 975 1433 38 21 21 chr3 51230376 51230536 -108369247 - B2_Mm1t SINE B2 -33 160 1 7 975 1000 179 113 15 chr3 51230781 51230985 -108368798 + URR1B DNA MER1_type 1 224 -1 7 975 899 103 44 7 chr3 51231136 51231273 -108368510 - B1_Mur3 SINE Alu -7 142 1 7 975 297 200 139 74 chr3 51231583 51231679 -108368104 + B1F SINE Alu 34 139 -10 7 975 1143 69 0 0 chr3 51231679 51231823 -108367960 + B1_Mus2 SINE Alu 1 144 -3 7 975 297 200 139 74 chr3 51231823 51231834 -108367949 + B1F SINE Alu 140 148 -1 7 975 554 196 0 21 chr3 51232087 51232181 -108367602 - B1_Mur2 SINE Alu -57 92 1 7 975 392 219 221 118 chr3 51232208 51232330 -108367453 - Lx4B LINE L1 -4 7054 6928 7 975 369 0 0 0 chr3 51232330 51232371 -108367412 + (CA)n Simple_repeat Simple_repeat 2 42 0 7 975 392 219 221 118 chr3 51232371 51232502 -108367281 - Lx4B LINE L1 -131 6927 6776 7 975 842 131 73 0 chr3 51232543 51232680 -108367103 - B1_Mus1 SINE Alu 0 148 2 7 975 725 208 77 72 chr3 51232714 51232921 -108366862 - B3 SINE B2 -8 208 1 7 975 1079 66 15 0 chr3 51232944 51233081 -108366702 - B1_Mus1 SINE Alu -9 139 1 7 975 356 286 17 87 chr3 51233093 51233208 -108366575 - B1F1 SINE Alu -7 110 4 7 975 725 204 238 12 chr3 51233678 51233842 -108365941 + B3 SINE B2 1 201 -15 7 975 180 0 0 0 chr3 51233842 51233862 -108365921 + (CA)n Simple_repeat Simple_repeat 1 20 0 7 975 387 169 0 0 chr3 51233861 51233932 -108365851 + (TA)n Simple_repeat Simple_repeat 1 71 0 7 975 984 69 30 0 chr3 51234023 51234154 -108365629 + B1_Mus2 SINE Alu 1 135 -12 7 975 186 43 0 0 chr3 51234156 51234179 -108365604 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 7 975 231 294 14 14 chr3 51234179 51234248 -108365535 - Tigger9b DNA MER2_type -7 617 549 7 975 1661 16 0 5 chr3 51234255 51234448 -108365335 + B2_Mm1a SINE B2 2 193 0 7 975 215 246 167 116 chr3 51234454 51234508 -108365275 + ID_B1 SINE B4 35 95 -129 7 975 316 217 90 42 chr3 51234508 51234608 -108365175 + PB1D10 SINE Alu 4 123 -4 7 975 288 308 45 120 chr3 51234687 51234709 -108365074 + B4 SINE B4 104 216 -76 7 975 756 84 0 27 chr3 51234709 51234806 -108364977 + B1_Mus2 SINE Alu 41 137 -10 7 975 240 35 0 0 chr3 51234806 51234835 -108364948 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 7 975 756 84 0 27 chr3 51234835 51234847 -108364936 + B1_Mus2 SINE Alu 138 147 0 7 975 232 304 23 102 chr3 51234861 51234949 -108364834 + B3A SINE B2 27 107 -91 7 975 1275 282 56 39 chr3 51234983 51235467 -108364316 - Tigger9b DNA MER2_type -132 492 1 7 975 662 159 325 0 chr3 51235975 51236138 -108363645 - B3 SINE B2 0 216 1 7 975 229 241 116 35 chr3 51236169 51236255 -108363528 - ID_B1 SINE B4 -3 221 129 7 975 354 282 164 65 chr3 51236277 51236645 -108363138 - L1MEc LINE L1 -5091 1309 970 7 975 402 210 0 58 chr3 51236848 51236934 -108362849 - B1_Mur3 SINE Alu 0 149 69 7 975 817 169 29 0 chr3 51236948 51237084 -108362699 - B1_Mus1 SINE Alu -8 140 1 7 975 183 42 0 0 chr3 51237470 51237494 -108362289 + (TTTTTG)n Simple_repeat Simple_repeat 1 24 0 7 975 1154 55 0 7 chr3 51237494 51237640 -108362143 - B1_Mus2 SINE Alu -1 146 2 7 975 1381 45 79 0 chr3 51237934 51237952 -108361831 - B2_Mm1t SINE B2 0 193 176 7 975 186 43 0 0 chr3 51237952 51237975 -108361808 + (TTTA)n Simple_repeat Simple_repeat 3 25 0 7 975 1381 45 79 0 chr3 51237975 51238134 -108361649 - B2_Mm1t SINE B2 -18 175 3 7 975 21 0 0 0 chr3 51238352 51238373 -108361410 + AT_rich Low_complexity Low_complexity 1 21 0 7 975 192 77 0 0 chr3 51238378 51238404 -108361379 + (TTTA)n Simple_repeat Simple_repeat 4 29 0 7 975 1103 103 0 0 chr3 51238404 51238560 -108361223 - B2_Mm2 SINE B2 -38 157 2 7 975 874 201 17 28 chr3 51238787 51238966 -108360817 + B3 SINE B2 1 177 -39 7 975 281 250 0 30 chr3 51239536 51239602 -108360181 + C-rich Low_complexity Low_complexity 4 67 0 7 975 549 179 7 146 chr3 51239635 51239779 -108360004 - B1_Mur1 SINE Alu 0 149 26 7 975 351 0 0 0 chr3 51239797 51239836 -108359947 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 7 975 266 68 45 0 chr3 51239857 51239901 -108359882 + B2_Mm1t SINE B2 126 171 -22 7 975 356 125 299 43 chr3 51239952 51240069 -108359714 + B2_Mm2 SINE B2 47 193 -2 7 975 195 190 138 0 chr3 51240762 51240820 -108358963 - L3 LINE CR1 -3317 1172 1107 7 975 582 315 64 59 chr3 51241294 51241585 -108358198 + B4A SINE B4 25 276 -16 7 975 351 96 0 0 chr3 51241617 51241669 -108358114 + (CA)n Simple_repeat Simple_repeat 1 52 0 7 975 697 228 0 14 chr3 51241890 51242028 -108357755 - B1_Mur1 SINE Alu -13 136 1 7 975 21 0 0 0 chr3 51242122 51242143 -108357640 + AT_rich Low_complexity Low_complexity 1 21 0 7 975 643 301 80 5 chr3 51242580 51242780 -108357003 + MLT1A0 LTR MaLR 1 215 -150 7 975 242 262 60 48 chr3 51242811 51242895 -108356888 + MLT1A0 LTR MaLR 324 408 0 7 975 237 132 0 0 chr3 51243562 51243600 -108356183 + (TTG)n Simple_repeat Simple_repeat 2 39 0 7 975 754 246 24 28 chr3 51243605 51243818 -108355965 - B3 SINE B2 0 216 5 7 975 1602 27 27 0 chr3 51243872 51244060 -108355723 - B2_Mm1a SINE B2 0 193 1 7 975 693 198 202 33 chr3 51244297 51244480 -108355303 - B3 SINE B2 0 216 3 7 975 1267 53 82 0 chr3 51244699 51244870 -108354913 - B2_Mm1a SINE B2 -8 185 1 7 975 586 164 53 9 chr3 51244872 51244991 -108354792 - B2_Mm1t SINE B2 -3 192 63 7 975 250 246 336 0 chr3 51245082 51245192 -108354591 - B3 SINE B2 0 216 70 7 975 2189 67 44 0 chr3 51245201 51245498 -108354285 - MTB LTR MaLR -90 310 1 7 975 226 267 183 0 chr3 51245605 51245665 -108354118 - PB1D9 SINE Alu -29 91 21 7 975 247 205 0 0 chr3 51245671 51245710 -108354073 - B1_Mus1 SINE Alu -88 60 22 7 975 341 254 0 0 chr3 51245716 51245775 -108354008 - PB1D9 SINE Alu -61 59 1 7 975 491 151 11 0 chr3 51246315 51246408 -108353375 + (TA)n Simple_repeat Simple_repeat 1 94 0 7 975 235 222 86 0 chr3 51247206 51247287 -108352496 - L1MC4 LINE L1 -502 7540 7453 7 975 313 306 130 6 chr3 51247418 51247579 -108352204 - L1MC4 LINE L1 -783 7259 7079 7 975 288 243 14 14 chr3 51248261 51248332 -108351451 + ID4_ SINE ID 8 78 -5 7 976 672 183 67 30 chr3 51249232 51249367 -108350416 + B1_Mur4 SINE Alu 1 140 -10 7 976 441 0 0 0 chr3 51249795 51249844 -108349939 + (TG)n Simple_repeat Simple_repeat 1 49 0 7 976 183 156 0 0 chr3 51250074 51250106 -108349677 + CT-rich Low_complexity Low_complexity 2 33 0 7 976 315 269 93 37 chr3 51250907 51251015 -108348768 + B1F SINE Alu 18 131 -18 7 976 360 0 0 0 chr3 51251482 51251522 -108348261 + (TG)n Simple_repeat Simple_repeat 2 41 0 7 976 219 277 0 0 chr3 51251543 51251590 -108348193 - B3A SINE B2 -78 120 74 7 976 433 250 101 43 chr3 51252011 51252149 -108347634 - B1_Mur1 SINE Alu -2 147 2 7 976 1439 75 16 0 chr3 51252803 51252990 -108346793 - B2_Mm2 SINE B2 -5 190 1 7 976 934 51 0 0 chr3 51253155 51253272 -108346511 - B1_Mus1 SINE Alu -10 138 22 7 976 959 156 0 0 chr3 51253712 51253853 -108345930 - B1_Mus1 SINE Alu -1 147 7 7 976 394 314 39 91 chr3 51253716 51253870 -108345913 - B4 SINE B4 -71 221 76 7 976 394 252 32 73 chr3 51254107 51254231 -108345552 - PB1 SINE Alu -2 125 7 7 976 243 0 0 0 chr3 51254494 51254521 -108345262 + (TCTG)n Simple_repeat Simple_repeat 2 28 0 7 976 368 250 130 61 chr3 51254576 51254691 -108345092 - ID_B1 SINE B4 -18 206 84 7 976 549 218 111 15 chr3 51254934 51255069 -108344714 - B1_Mur3 SINE Alu 0 149 2 7 976 26 0 0 0 chr3 51255356 51255382 -108344401 + AT_rich Low_complexity Low_complexity 1 26 0 7 976 259 261 90 64 chr3 51255512 51255653 -108344130 - L1MC5 LINE L1 -41 7920 7790 7 976 353 179 260 10 chr3 51255653 51255749 -108344034 - PB1D7 SINE Alu 0 120 1 7 976 259 261 90 64 chr3 51255749 51255840 -108343943 - L1MC5 LINE L1 -172 7789 7682 7 976 413 238 88 10 chr3 51255855 51255957 -108343826 + PB1 SINE Alu 11 120 -7 7 976 378 0 0 0 chr3 51256052 51256094 -108343689 + (CA)n Simple_repeat Simple_repeat 1 42 0 7 976 214 309 67 76 chr3 51256147 51256252 -108343531 + B4 SINE B4 14 117 -175 7 976 197 196 0 19 chr3 51256408 51256460 -108343323 + CT-rich Low_complexity Low_complexity 1 51 0 7 976 1027 127 3 0 chr3 51256517 51256683 -108343100 - B2_Mm2 SINE B2 -15 178 9 8 976 1187 272 84 10 chr3 51256680 51257063 -108342720 - MTD LTR MaLR -8 411 1 8 976 211 317 0 89 chr3 51257063 51257103 -108342680 - B1F SINE Alu -94 55 24 8 976 300 238 11 106 chr3 51257353 51257447 -108342336 - B1_Mur4 SINE Alu -2 148 64 8 976 1271 79 11 6 chr3 51257487 51257665 -108342118 + B2_Mm1t SINE B2 1 179 -14 8 976 361 95 262 41 chr3 51257693 51257815 -108341968 + B2_Mm2 SINE B2 47 195 0 8 976 843 121 297 6 chr3 51257842 51258017 -108341766 - URR1A DNA MER1_type 0 226 1 8 976 975 103 25 6 chr3 51258104 51258261 -108341522 - B2_Mm2 SINE B2 -34 161 2 8 976 22 0 0 0 chr3 51258577 51258599 -108341184 + AT_rich Low_complexity Low_complexity 1 22 0 8 976 219 114 0 0 chr3 51258717 51258752 -108341031 + (TAAA)n Simple_repeat Simple_repeat 4 38 0 8 976 22 0 0 0 chr3 51258785 51258807 -108340976 + AT_rich Low_complexity Low_complexity 1 22 0 8 976 253 279 191 7 chr3 51258856 51258997 -108340786 - L1MC5 LINE L1 -1150 6811 6645 7 976 423 0 0 0 chr3 51259469 51259516 -108340267 + (CA)n Simple_repeat Simple_repeat 1 47 0 8 976 252 0 0 0 chr3 51260098 51260126 -108339657 + (TG)n Simple_repeat Simple_repeat 1 28 0 8 976 376 242 84 0 chr3 51260571 51260666 -108339117 - PB1D7 SINE Alu -9 111 9 8 976 22 56 0 0 chr3 51260681 51260717 -108339066 + AT_rich Low_complexity Low_complexity 1 36 0 8 976 422 366 19 7 chr3 51260724 51260878 -108338905 - RSINE1 SINE B4 -5 160 5 8 976 21 0 0 0 chr3 51261129 51261150 -108338633 + AT_rich Low_complexity Low_complexity 1 21 0 8 976 790 248 6 0 chr3 51261444 51261605 -108338178 - B3 SINE B2 -7 209 48 8 976 216 208 0 20 chr3 51261722 51261771 -108338012 + CT-rich Low_complexity Low_complexity 3 50 0 8 976 1180 61 0 0 chr3 51261771 51261919 -108337864 - B1_Mus1 SINE Alu 0 148 1 8 976 560 210 10 0 chr3 51261950 51262050 -108337733 - B3 SINE B2 -87 129 29 8 976 424 179 22 133 chr3 51262098 51262233 -108337550 + PB1D9 SINE Alu 1 120 0 8 976 21 0 0 0 chr3 51262774 51262795 -108336988 + AT_rich Low_complexity Low_complexity 1 21 0 8 976 473 295 49 8 chr3 51262999 51263122 -108336661 + ID_B1 SINE B4 82 209 -15 8 976 372 22 0 0 chr3 51263216 51263261 -108336522 + (TG)n Simple_repeat Simple_repeat 2 46 0 8 976 229 309 29 14 chr3 51264349 51264418 -108335365 - ID2 SINE ID -9 74 5 8 976 1089 190 179 19 chr3 51264642 51264910 -108334873 - ORR1C2 LTR MaLR -73 311 1 8 976 236 256 13 13 chr3 51265075 51265154 -108334629 + GA-rich Low_complexity Low_complexity 3 81 0 8 976 225 242 16 0 chr3 51265275 51265337 -108334446 + (TG)n Simple_repeat Simple_repeat 1 63 0 8 976 337 269 75 0 chr3 51266326 51266419 -108333364 - PB1D7 SINE Alu -19 101 2 8 976 951 251 5 0 chr3 51266609 51266812 -108332971 - B3 SINE B2 -12 204 1 8 976 485 248 88 0 chr3 51266846 51266983 -108332800 + B3 SINE B2 68 216 0 8 976 184 219 110 0 chr3 51267522 51267595 -108332188 + MIR SINE MIR 167 247 -15 8 976 351 250 10 52 chr3 51267952 51268049 -108331734 + PB1D7 SINE Alu 1 93 -27 8 976 322 309 107 38 chr3 51268108 51268126 -108331657 - ID_B1 SINE B4 -2 222 86 8 976 330 294 118 9 chr3 51268126 51268236 -108331547 - B1F2 SINE Alu -23 126 5 8 976 282 247 142 85 chr3 51268430 51268536 -108331247 - B1_Mur3 SINE Alu 0 117 6 8 976 275 248 90 54 chr3 51268566 51268677 -108331106 + RSINE1 SINE B4 19 133 -32 8 976 437 286 61 33 chr3 51269664 51269845 -108329938 + B3A SINE B2 2 187 -11 8 976 1076 58 0 0 chr3 51269991 51270128 -108329655 - B1_Mus2 SINE Alu -9 138 2 8 976 561 254 79 7 chr3 51270504 51270643 -108329140 - B1_Mur1 SINE Alu 0 149 1 8 976 782 188 7 0 chr3 51270673 51270811 -108328972 - B1_Mus2 SINE Alu 0 147 9 8 976 22 0 0 0 chr3 51270836 51270858 -108328925 + AT_rich Low_complexity Low_complexity 1 22 0 8 976 21 0 0 0 chr3 51271121 51271142 -108328641 + AT_rich Low_complexity Low_complexity 1 21 0 8 976 252 0 0 0 chr3 51271201 51271229 -108328554 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 8 976 1155 63 0 0 chr3 51271234 51271377 -108328406 - B1_Mus1 SINE Alu -5 143 1 8 976 571 165 131 8 chr3 51271399 51271521 -108328262 - B1_Mur2 SINE Alu -1 148 12 8 976 203 125 25 0 chr3 51271557 51271597 -108328186 + (TATG)n Simple_repeat Simple_repeat 2 42 0 8 976 371 216 27 0 chr3 51271632 51271706 -108328077 - B3A SINE B2 -122 76 1 8 976 409 167 178 0 chr3 51271916 51272006 -108327777 - B1_Mur1 SINE Alu -2 147 42 8 976 219 310 31 8 chr3 51272054 51272184 -108327599 + (TGAG)n Simple_repeat Simple_repeat 3 135 0 8 976 234 342 53 0 chr3 51272281 51272357 -108327426 - RSINE1 SINE B4 -82 83 4 8 976 209 57 0 28 chr3 51272398 51272434 -108327349 + (TCTG)n Simple_repeat Simple_repeat 2 36 0 8 976 2021 213 173 40 chr3 51273069 51273670 -108326113 - RMER1B Other Other 0 1066 386 8 976 486 240 96 0 chr3 51274394 51274519 -108325264 - B1_Mur2 SINE Alu -8 141 5 8 976 478 242 59 22 chr3 51274811 51274946 -108324837 + B1F2 SINE Alu 1 140 -9 8 976 360 317 33 66 chr3 51274946 51274961 -108324822 + B4 SINE B4 86 230 -62 8 976 1191 107 0 33 chr3 51275519 51275702 -108324081 - B2_Mm2 SINE B2 -17 178 2 8 976 689 197 34 27 chr3 51275959 51276105 -108323678 - B1_Mur1 SINE Alu 0 149 3 8 976 364 271 22 58 chr3 51275989 51276126 -108323657 - ID_B1 SINE B4 -25 199 68 8 976 246 174 0 0 chr3 51278666 51278712 -108321071 + (TG)n Simple_repeat Simple_repeat 2 47 0 8 976 260 285 0 46 chr3 51280072 51280103 -108319680 + ID SINE ID 65 86 -206 8 976 231 297 31 0 chr3 51280103 51280167 -108319616 + B1F SINE Alu 2 67 -82 8 976 400 202 56 0 chr3 51280424 51280513 -108319270 - PB1D9 SINE Alu -26 94 1 8 976 221 240 35 118 chr3 51280532 51280617 -108319166 - RSINE1 SINE B4 -6 159 82 8 976 693 146 104 16 chr3 51281442 51281567 -108318216 - B1_Mur3 SINE Alu -13 136 1 8 976 495 233 29 0 chr3 51281615 51281718 -108318065 - RSINE1 SINE B4 -38 127 22 8 976 355 169 175 28 chr3 51283484 51283586 -108316197 + B1_Mus2 SINE Alu 2 126 -21 8 976 545 230 107 13 chr3 51283716 51283866 -108315917 + B4A SINE B4 1 164 -128 8 976 509 123 14 0 chr3 51284114 51284187 -108315596 + B3 SINE B2 1 74 -142 8 976 337 193 273 0 chr3 51284173 51284261 -108315522 + B1_Mus1 SINE Alu 25 136 -12 8 976 719 252 26 0 chr3 51284551 51284702 -108315081 - ID_B1 SINE B4 -62 162 8 8 976 444 147 0 0 chr3 51284737 51284812 -108314971 + (TA)n Simple_repeat Simple_repeat 1 75 0 8 976 288 0 0 0 chr3 51284812 51284844 -108314939 + (TG)n Simple_repeat Simple_repeat 2 33 0 8 976 1148 69 0 0 chr3 51284845 51284989 -108314794 - B1_Mus2 SINE Alu -3 144 1 8 976 252 190 86 0 chr3 51285058 51285116 -108314667 - tRNA-Ala-GCA tRNA tRNA -7 68 6 8 976 242 233 117 0 chr3 51285330 51285390 -108314393 - ID4 SINE ID -2 81 15 8 976 24 53 0 0 chr3 51285393 51285431 -108314352 + AT_rich Low_complexity Low_complexity 1 38 0 8 976 580 181 29 0 chr3 51285458 51285563 -108314220 - B1_Mur2 SINE Alu -3 146 39 8 976 313 298 21 31 chr3 51285558 51285655 -108314128 - PB1D10 SINE Alu -21 96 1 8 976 1448 143 61 4 chr3 51285661 51285906 -108313877 + RLTR15 LTR ERVK 63 321 -38 8 976 812 144 26 17 chr3 51286198 51286342 -108313441 - ORR1C2 LTR MaLR 0 384 241 8 976 229 192 18 55 chr3 51286308 51286363 -108313420 - B1F1 SINE Alu -52 97 45 8 976 372 296 40 0 chr3 51286385 51286510 -108313273 + L1MEf LINE L1 577 706 -5494 8 976 349 359 91 31 chr3 51286568 51286887 -108312896 + LTR40a LTR ERVL 4 341 -178 8 976 299 237 144 0 chr3 51286911 51287008 -108312775 + LTR40a LTR ERVL 345 455 -7 8 976 264 315 0 0 chr3 51287042 51287096 -108312687 - B1F1 SINE Alu -95 54 1 8 976 231 317 16 16 chr3 51287046 51287107 -108312676 - ID_B1 SINE B4 -94 130 70 8 976 511 260 46 23 chr3 51287138 51287268 -108312515 + B1F SINE Alu 1 133 -16 8 976 473 281 42 36 chr3 51287308 51287474 -108312309 + B4A SINE B4 51 217 -75 8 976 268 315 21 52 chr3 51287585 51287682 -108312101 + B1_Mus2 SINE Alu 1 94 -26 8 976 241 280 0 74 chr3 51288647 51288728 -108311055 - MER5A1 DNA MER1_type 0 166 92 8 976 491 190 71 116 chr3 51288925 51289080 -108310703 + B1_Mur3 SINE Alu 1 148 -1 8 976 261 0 0 0 chr3 51289098 51289127 -108310656 + (CAA)n Simple_repeat Simple_repeat 2 30 0 8 976 526 202 8 68 chr3 51289546 51289663 -108310120 + B1_Mur2 SINE Alu 11 120 -29 8 976 434 258 14 86 chr3 51289961 51290101 -108309682 - B4A SINE B4 -1 291 162 8 976 189 107 0 0 chr3 51290172 51290200 -108309583 + (TTTTC)n Simple_repeat Simple_repeat 2 29 0 8 976 1205 48 0 0 chr3 51290202 51290349 -108309434 - B1_Mus2 SINE Alu 0 147 1 8 976 1761 127 80 19 chr3 51290351 51290663 -108309120 - MTB_Mm LTR MaLR -76 331 1 8 976 372 242 100 57 chr3 51290772 51290912 -108308871 + MLT1A0 LTR MaLR 1 146 -219 8 976 337 235 24 12 chr3 51291284 51291366 -108308417 - B1_Mur3 SINE Alu -26 123 41 8 976 764 128 15 60 chr3 51291360 51291433 -108308350 + B1_Mm SINE Alu 21 86 -61 9 976 1209 156 4 118 chr3 51291433 51291524 -108308259 + URR1B DNA MER1_type 1 91 -134 9 976 1185 68 0 0 chr3 51291524 51291670 -108308113 + B1_Mus2 SINE Alu 2 147 0 9 976 1209 156 4 118 chr3 51291670 51291832 -108307951 + URR1B DNA MER1_type 92 225 0 9 976 764 128 15 60 chr3 51291832 51291891 -108307892 + B1_Mm SINE Alu 87 147 0 9 976 725 196 53 0 chr3 51292069 51292202 -108307581 + B1_Mur1 SINE Alu 1 140 -9 9 976 715 272 103 40 chr3 51292271 51292543 -108307240 - B4A SINE B4 -2 290 2 9 976 430 269 23 1 chr3 51292576 51292691 -108307092 + PB1D9 SINE Alu 1 120 -29 9 976 323 128 11 124 chr3 51292671 51292760 -108307023 + PB1D7 SINE Alu 42 120 0 9 976 1513 54 5 0 chr3 51293306 51293490 -108306293 - B2_Mm1t SINE B2 -7 186 2 9 976 261 0 0 0 chr3 51293649 51293678 -108306105 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 9 976 1126 72 0 0 chr3 51293678 51293817 -108305966 - B1_Mus1 SINE Alu -9 139 1 9 976 1296 103 0 11 chr3 51293828 51294014 -108305769 - B2_Mm2 SINE B2 -10 185 2 9 976 264 189 24 98 chr3 51294054 51294136 -108305647 - ID4 SINE ID -4 79 4 9 976 1044 56 19 83 chr3 51294878 51295035 -108304748 + B1_Mus1 SINE Alu 2 148 0 9 976 551 248 178 0 chr3 51295192 51295349 -108304434 - B3 SINE B2 -31 185 1 9 976 180 0 0 0 chr3 51295527 51295547 -108304236 + (TG)n Simple_repeat Simple_repeat 1 20 0 9 976 577 235 25 63 chr3 51295571 51295730 -108304053 - RSINE1 SINE B4 -12 153 1 9 976 435 214 112 0 chr3 51295753 51295851 -108303932 - PB1D9 SINE Alu -9 111 3 9 976 835 246 65 35 chr3 51296129 51296390 -108303393 - B4A SINE B4 0 292 24 9 976 680 234 14 7 chr3 51296595 51296741 -108303042 + B1_Mur1 SINE Alu 2 148 -1 9 976 224 378 51 0 chr3 51296842 51296940 -108302843 + RSINE1 SINE B4 62 164 -1 9 976 478 226 111 15 chr3 51298908 51299043 -108300740 - B1_Mur1 SINE Alu 0 149 2 9 976 1759 16 0 0 chr3 51299953 51300146 -108299637 + B2_Mm1a SINE B2 1 193 0 9 976 808 255 19 0 chr3 51300823 51300984 -108298799 + B3A SINE B2 1 164 -34 9 976 294 29 0 0 chr3 51300993 51301028 -108298755 + (CA)n Simple_repeat Simple_repeat 1 35 0 9 976 2232 239 69 82 chr3 51301041 51301585 -108298198 - RLTR40 LTR ERVK -45 772 241 9 976 2177 99 44 50 chr3 51301585 51301948 -108297835 + Lx LINE L1 6294 6654 0 9 976 2232 239 69 82 chr3 51301948 51302185 -108297598 - RLTR40 LTR ERVK -577 240 1 9 976 793 231 42 23 chr3 51302361 51302578 -108297205 + ID_B1 SINE B4 3 223 -1 9 976 400 239 138 0 chr3 51303199 51303308 -108296475 + ID_B1 SINE B4 93 216 -8 9 976 231 36 0 0 chr3 51303310 51303338 -108296445 + (TGAA)n Simple_repeat Simple_repeat 2 29 0 9 976 223 300 0 0 chr3 51303366 51303426 -108296357 + ID4_ SINE ID 19 78 -5 9 976 189 0 0 0 chr3 51304154 51304175 -108295608 + (TC)n Simple_repeat Simple_repeat 2 22 0 9 976 243 0 0 0 chr3 51304175 51304201 -108295582 + (TG)n Simple_repeat Simple_repeat 2 28 0 9 976 274 253 10 103 chr3 51304212 51304309 -108295474 - RSINE1 SINE B4 -36 129 42 9 976 543 180 26 18 chr3 51304353 51304466 -108295317 - PB1D9 SINE Alu -5 115 2 9 976 316 279 90 40 chr3 51304542 51304731 -108295052 - MLT1F2 LTR MaLR -9 586 392 9 976 345 157 0 0 chr3 51305116 51305169 -108294614 + T-rich Low_complexity Low_complexity 18 70 0 9 976 1263 48 0 0 chr3 51305169 51305316 -108294467 - B1_Mm SINE Alu 0 147 1 9 976 345 157 0 0 chr3 51305316 51305332 -108294451 + T-rich Low_complexity Low_complexity 2 17 0 9 976 2213 191 63 25 chr3 51305533 51305581 -108294202 - RLTR20B1 LTR ERVK -53 507 455 9 976 447 19 0 0 chr3 51305581 51305633 -108294150 + (CA)n Simple_repeat Simple_repeat 2 53 0 9 976 2596 147 48 7 chr3 51305633 51306072 -108293711 - RLTR20B1 LTR ERVK -107 456 1 9 976 280 179 75 25 chr3 51306072 51306152 -108293631 - L1MA6 LINE L1 -396 5904 5821 9 976 571 66 47 0 chr3 51306188 51306294 -108293489 + (TCTA)n Simple_repeat Simple_repeat 3 113 0 9 976 252 100 0 0 chr3 51306311 51306351 -108293432 + (TC)n Simple_repeat Simple_repeat 1 40 0 9 976 959 205 5 25 chr3 51306351 51306551 -108293232 - B3 SINE B2 -17 199 4 9 976 505 174 12 0 chr3 51306623 51306709 -108293074 - B3 SINE B2 -124 92 6 9 976 992 231 173 20 chr3 51306735 51307036 -108292747 - Lx8 LINE L1 -204 7269 6923 9 976 313 158 59 151 chr3 51307035 51307097 -108292686 - L1M1 LINE L1 -484 5816 5762 9 976 497 105 400 0 chr3 51307097 51307202 -108292581 - B1_Mus2 SINE Alu 0 147 1 9 976 313 158 59 151 chr3 51307202 51307258 -108292525 - L1M1 LINE L1 -539 5761 5709 9 976 1069 68 13 52 chr3 51307281 51307435 -108292348 + B1_Mus1 SINE Alu 1 148 0 9 976 1168 80 11 11 chr3 51307436 51307614 -108292169 + (GAAA)n Simple_repeat Simple_repeat 1 178 0 9 976 225 0 0 0 chr3 51307629 51307654 -108292129 + (CAGA)n Simple_repeat Simple_repeat 2 26 0 9 976 528 319 80 30 chr3 51307689 51307951 -108291832 + Charlie7 DNA MER1_type 1855 2129 -483 9 976 543 216 204 30 chr3 51307999 51308166 -108291617 + MTD LTR MaLR 204 399 -20 9 976 491 258 58 0 chr3 51308196 51308316 -108291467 - RSINE1 SINE B4 -31 134 8 9 976 180 111 0 0 chr3 51309088 51309115 -108290668 + (T)n Simple_repeat Simple_repeat 1 27 0 9 976 1060 97 0 0 chr3 51309115 51309260 -108290523 - B2_Mm2 SINE B2 -49 146 2 9 976 315 240 113 10 chr3 51309287 51309384 -108290399 - B1F SINE Alu -1 148 42 9 976 284 206 143 29 chr3 51309960 51310030 -108289753 + ID2 SINE ID 5 82 -1 9 976 228 327 9 37 chr3 51310027 51310135 -108289648 + ORSL-2b DNA Tip100 200 304 -204 9 976 27 49 0 0 chr3 51310249 51310290 -108289493 + AT_rich Low_complexity Low_complexity 1 41 0 9 976 351 309 77 34 chr3 51310307 51310418 -108289365 - L1M4 LINE L1 -1593 4553 4435 9 976 396 0 0 0 chr3 51310418 51310462 -108289321 + (TTTA)n Simple_repeat Simple_repeat 2 45 0 9 976 1158 52 0 0 chr3 51310463 51310598 -108289185 - B1_Mus2 SINE Alu -12 135 1 9 976 351 309 77 34 chr3 51310598 51310692 -108289091 - L1M4 LINE L1 -1712 4434 4340 9 976 1139 179 14 36 chr3 51310773 51310993 -108288790 - B3 SINE B2 -1 215 1 9 976 253 217 0 0 chr3 51310999 51311059 -108288724 - L1M4 LINE L1 -1780 4366 4307 9 976 255 61 0 0 chr3 51311218 51311251 -108288532 + (ATTG)n Simple_repeat Simple_repeat 2 34 0 9 976 421 312 46 23 chr3 51313290 51313421 -108286362 + RSINE1 SINE B4 3 136 -29 9 976 477 0 0 0 chr3 51313423 51313476 -108286307 + (CA)n Simple_repeat Simple_repeat 2 54 0 9 976 432 86 0 0 chr3 51313476 51313546 -108286237 + (GA)n Simple_repeat Simple_repeat 1 70 0 9 976 504 271 60 40 chr3 51313578 51313728 -108286055 - RSINE1 SINE B4 -12 153 1 9 976 653 189 41 27 chr3 51313749 51313896 -108285887 - B1_Mur2 SINE Alu 0 149 1 9 976 247 65 43 0 chr3 51314208 51314254 -108285529 + (CAAAA)n Simple_repeat Simple_repeat 3 50 0 9 976 811 126 94 8 chr3 51314262 51314390 -108285393 + B1_Mus1 SINE Alu 3 141 -7 9 976 405 148 0 0 chr3 51314614 51314695 -108285088 + (TG)n Simple_repeat Simple_repeat 1 81 0 9 976 419 196 120 0 chr3 51314792 51314884 -108284899 - ID_B1 SINE B4 -1 223 121 9 976 309 322 188 1 chr3 51315303 51315602 -108284181 + MER74A LTR ERVL 215 615 -7 9 976 640 262 76 91 chr3 51315601 51315865 -108283918 - B4A SINE B4 0 292 33 9 976 3165 161 81 28 chr3 51315939 51316464 -108283319 + RMER1B Other Other 401 948 -118 9 976 3484 24 63 5 chr3 51316464 51316876 -108282907 - RLTR10C LTR ERVK 0 436 1 9 976 3165 161 81 28 chr3 51316876 51316983 -108282800 + RMER1B Other Other 949 1066 0 9 976 415 238 57 0 chr3 51317129 51317234 -108282549 + PB1D7 SINE Alu 9 119 -1 9 976 348 214 130 26 chr3 51317234 51317349 -108282434 + RSINE1 SINE B4 3 129 -36 9 976 348 83 0 0 chr3 51318106 51318154 -108281629 + (TTCC)n Simple_repeat Simple_repeat 1 48 0 9 976 1073 114 97 0 chr3 51318154 51318330 -108281453 - B2_Mm2 SINE B2 -1 194 2 9 976 593 257 7 67 chr3 51318382 51318532 -108281251 - RSINE1 SINE B4 -21 144 4 9 976 1013 96 0 0 chr3 51318570 51318705 -108281078 - B2_Mm2 SINE B2 -59 136 2 9 976 430 265 53 112 chr3 51318712 51318899 -108280884 - B3A SINE B2 0 198 23 9 976 802 117 51 6 chr3 51318923 51319061 -108280722 - B1_Mus1 SINE Alu 0 149 11 9 976 182 240 0 74 chr3 51319126 51319180 -108280603 - L2 LINE L2 -1795 1624 1575 9 976 225 0 0 0 chr3 51319204 51319229 -108280554 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 9 976 192 40 0 0 chr3 51321566 51321591 -108278192 + (TG)n Simple_repeat Simple_repeat 1 25 0 9 976 438 170 41 34 chr3 51322359 51322505 -108277278 + GA-rich Low_complexity Low_complexity 2 148 0 9 976 216 0 0 0 chr3 51322841 51322865 -108276918 + (TG)n Simple_repeat Simple_repeat 1 24 0 9 976 375 289 81 7 chr3 51322874 51323010 -108276773 - RSINE1 SINE B4 -17 148 3 9 976 256 231 51 51 chr3 51325036 51325173 -108274610 - RMER17D LTR ERVK -522 367 231 9 976 508 258 161 21 chr3 51325557 51325743 -108274040 + ID_B1 SINE B4 5 216 -8 9 976 595 222 51 0 chr3 51325789 51325906 -108273877 - RSINE1 SINE B4 -40 125 3 9 976 209 366 54 52 chr3 51326228 51326437 -108273346 + MIRb SINE MIR 19 234 -34 9 976 241 321 171 29 chr3 51326440 51326610 -108273173 + RMER12 LTR ERVK 746 939 -383 9 976 387 0 0 0 chr3 51326754 51326797 -108272986 + (TATG)n Simple_repeat Simple_repeat 4 46 0 9 976 1022 271 19 140 chr3 51326797 51327282 -108272501 + RLTR11B LTR ERVK 2 427 -26 9 976 1420 136 229 3 chr3 51327336 51327624 -108272159 + ORR1B2 LTR MaLR 1 353 -14 9 976 545 256 15 30 chr3 51327633 51327766 -108272017 - B1_Mur1 SINE Alu -17 132 2 1 976 459 135 0 0 chr3 51328019 51328093 -108271690 - PB1D9 SINE Alu -2 118 45 1 976 407 138 0 0 chr3 51328097 51328162 -108271621 - PB1D9 SINE Alu -11 109 45 1 976 582 132 1 1 chr3 51328166 51328265 -108271518 - PB1D9 SINE Alu -11 109 11 1 976 219 317 0 58 chr3 51328234 51328321 -108271462 - PB1D10 SINE Alu -34 83 2 1 976 432 37 0 0 chr3 51328503 51328557 -108271226 + (CAGG)n Simple_repeat Simple_repeat 3 56 0 1 976 410 273 104 121 chr3 51329496 51329932 -108269851 + RLTR11A2 LTR ERVK 18 456 -72 1 976 1373 85 17 0 chr3 51329932 51330108 -108269675 + B2_Mm2 SINE B2 2 180 -15 1 976 207 0 0 0 chr3 51330112 51330135 -108269648 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1 976 410 297 52 126 chr3 51330135 51330207 -108269576 + RLTR11A2 LTR ERVK 436 506 -21 1 976 609 258 35 58 chr3 51330241 51330479 -108269304 - B4 SINE B4 -4 288 2 1 976 355 283 20 55 chr3 51331202 51331348 -108268435 + RSINE1 SINE B4 2 142 -23 1 976 523 175 215 8 chr3 51331374 51331495 -108268288 - B1_Mus1 SINE Alu 0 148 3 1 976 1222 116 50 0 chr3 51331864 51332045 -108267738 + B2_Mm2 SINE B2 1 190 -5 1 976 783 32 0 0 chr3 51332069 51332163 -108267620 + (TTCC)n Simple_repeat Simple_repeat 4 97 0 1 976 315 71 0 0 chr3 51332163 51332205 -108267578 + (TC)n Simple_repeat Simple_repeat 2 43 0 1 976 1186 68 0 0 chr3 51332205 51332352 -108267431 - B1_Mus2 SINE Alu 0 147 1 1 976 294 390 10 0 chr3 51332354 51332454 -108267329 - Charlie12 DNA MER1_type -2766 107 7 1 976 345 352 0 32 chr3 51332369 51332463 -108267320 + RMER30 DNA MER1_type 111 201 -1 1 976 308 297 0 63 chr3 51332653 51332779 -108267004 + MIR SINE MIR 25 142 -120 1 976 207 139 0 0 chr3 51333000 51333036 -108266747 + (TCTG)n Simple_repeat Simple_repeat 1 36 0 1 976 349 146 0 0 chr3 51333062 51333117 -108266666 - B1_Mur4 SINE Alu 0 150 96 1 976 612 0 0 0 chr3 51333121 51333189 -108266594 + (TTCC)n Simple_repeat Simple_repeat 1 68 0 1 976 756 227 14 68 chr3 51333189 51333411 -108266372 - B4 SINE B4 -82 210 1 1 976 283 330 0 57 chr3 51333420 51333526 -108266257 - PB1D10 SINE Alu -13 104 5 1 976 278 282 38 16 chr3 51333591 51333685 -108266098 - FLAM_A SINE Alu -13 104 1 1 976 693 113 26 15 chr3 51334407 51334537 -108265246 - B1_Mur3 SINE Alu -2 147 11 1 976 266 358 0 12 chr3 51334587 51334669 -108265114 - ID4_ SINE ID -1 82 2 1 976 825 210 49 0 chr3 51334698 51334860 -108264923 + B3 SINE B2 35 204 -12 1 976 460 286 61 24 chr3 51335112 51335277 -108264506 + MER58A DNA MER1_type 1 171 -53 1 976 462 256 162 0 chr3 51336447 51336564 -108263219 + RSINE1 SINE B4 1 136 -29 1 976 299 269 84 21 chr3 51337175 51337270 -108262513 - PB1D10 SINE Alu -12 105 5 1 976 230 0 33 0 chr3 51337386 51337416 -108262367 + (CAAAAA)n Simple_repeat Simple_repeat 2 32 0 1 976 293 295 53 8 chr3 51337923 51338056 -108261727 - LTR33A_ LTR ERVL -3 528 390 1 976 612 220 0 36 chr3 51338186 51338323 -108261460 + MT2A LTR ERVL 1 132 -401 1 976 268 218 0 18 chr3 51338311 51338367 -108261416 + MT2A LTR ERVL 87 141 -392 1 976 902 99 41 27 chr3 51338600 51338746 -108261037 + B1_Mus1 SINE Alu 1 148 0 1 976 713 179 66 46 chr3 51338772 51338924 -108260859 + B3 SINE B2 3 157 -59 1 976 1698 16 5 0 chr3 51338997 51339187 -108260596 - B2_Mm1t SINE B2 -2 191 1 1 976 424 262 219 88 chr3 51339263 51339514 -108260269 - B4 SINE B4 -8 284 1 1 976 484 314 12 70 chr3 51339617 51339788 -108259995 - RSINE1 SINE B4 -2 163 3 1 976 204 277 0 0 chr3 51340182 51340229 -108259554 + (CAGCC)n Simple_repeat Simple_repeat 2 48 0 1 976 479 239 22 0 chr3 51340954 51341046 -108258737 + PB1D10 SINE Alu 15 108 -9 1 976 210 37 0 0 chr3 51341123 51341150 -108258633 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 976 1172 69 0 14 chr3 51341166 51341313 -108258470 - B1_Mus1 SINE Alu -2 146 2 1 976 1588 32 27 0 chr3 51341342 51341529 -108258254 - B2_Mm1a SINE B2 0 193 2 1 976 674 216 154 6 chr3 51341550 51341732 -108258051 - B3 SINE B2 -6 210 2 1 976 367 306 31 31 chr3 51341777 51341905 -108257878 - B1F2 SINE Alu 0 149 22 1 976 707 197 69 49 chr3 51341940 51342084 -108257699 + B1_Mur2 SINE Alu 1 147 -2 1 976 195 42 0 0 chr3 51342120 51342144 -108257639 + (TTA)n Simple_repeat Simple_repeat 2 25 0 1 976 284 169 12 134 chr3 51342144 51342226 -108257557 - ID4_ SINE ID -6 77 6 1 976 820 121 74 22 chr3 51342250 51342385 -108257398 + B1_Mur3 SINE Alu 1 142 -7 1 976 494 331 47 7 chr3 51342700 51342849 -108256934 - RSINE1 SINE B4 0 165 11 1 976 842 265 22 0 chr3 51343587 51343772 -108256011 + ID_B1 SINE B4 29 217 -7 1 976 296 284 104 52 chr3 51344412 51344605 -108255178 + Lx8 LINE L1 7267 7469 -4 1 976 382 226 262 9 chr3 51345115 51345222 -108254561 - B3 SINE B2 -82 134 1 1 976 772 169 21 14 chr3 51345321 51345465 -108254318 + B1_Mus2 SINE Alu 2 146 -1 1 976 372 296 223 13 chr3 51345475 51345704 -108254079 - B4A SINE B4 -13 279 3 1 976 807 178 15 0 chr3 51345873 51346008 -108253775 + B1_Mur1 SINE Alu 1 137 -12 1 976 390 21 0 0 chr3 51346025 51346072 -108253711 + (CCTG)n Simple_repeat Simple_repeat 2 48 0 1 976 207 0 0 0 chr3 51346072 51346095 -108253688 + (TC)n Simple_repeat Simple_repeat 1 23 0 1 976 287 204 100 0 chr3 51346095 51346183 -108253600 - B1_Mur2 SINE Alu -5 144 5 1 976 204 247 25 25 chr3 51346804 51346883 -108252900 + CT-rich Low_complexity Low_complexity 3 81 0 1 976 603 175 0 0 chr3 51346910 51347007 -108252776 - RSINE1 SINE B4 -55 110 14 1 976 300 237 0 17 chr3 51347123 51347183 -108252600 + ID4 SINE ID 3 61 -22 1 976 636 238 18 64 chr3 51348102 51348273 -108251510 + RSINE1 SINE B4 3 165 0 1 976 252 341 51 72 chr3 51348662 51348899 -108250884 - MamRep434 DNA TcMar -185 241 10 1 976 332 339 56 28 chr3 51349031 51349210 -108250573 - MER53 DNA hAT 0 193 10 1 976 490 235 92 0 chr3 51349359 51349478 -108250305 - RSINE1 SINE B4 -22 143 14 1 976 570 134 93 0 chr3 51349489 51349586 -108250197 - B1_Mus2 SINE Alu 0 147 42 1 976 284 187 61 61 chr3 51349516 51349630 -108250153 - RLTR25B LTR ERVK -518 510 397 1 976 196 185 0 36 chr3 51350121 51350177 -108249606 + CT-rich Low_complexity Low_complexity 3 56 0 1 976 349 220 109 11 chr3 51350181 51350273 -108249510 - PB1D7 SINE Alu -15 105 5 1 976 558 217 61 0 chr3 51350300 51350415 -108249368 - ID_B1 SINE B4 -1 223 102 1 976 425 224 109 22 chr3 51350415 51350435 -108249348 - B1F SINE Alu 0 147 1 1 976 300 27 0 0 chr3 51350455 51350492 -108249291 + (TG)n Simple_repeat Simple_repeat 1 37 0 1 976 737 194 31 8 chr3 51350492 51350622 -108249161 - B3A SINE B2 -64 134 2 1 976 365 234 195 27 chr3 51351188 51351337 -108248446 - RMER30 DNA MER1_type -27 175 2 1 976 402 245 280 54 chr3 51351746 51351928 -108247855 + B4 SINE B4 1 223 -69 1 976 493 254 49 0 chr3 51351944 51352066 -108247717 + RSINE1 SINE B4 18 145 -20 1 976 311 65 22 0 chr3 51352174 51352220 -108247563 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 976 211 288 50 0 chr3 51352315 51352395 -108247388 + B1F2 SINE Alu 3 86 -63 1 976 352 213 80 0 chr3 51352405 51352480 -108247303 + ID4 SINE ID 2 82 -1 1 976 207 139 0 0 chr3 51353286 51353322 -108246461 + (CGTG)n Simple_repeat Simple_repeat 1 36 0 1 976 212 293 81 47 chr3 51353750 51353836 -108245947 - RSINE1 SINE B4 0 165 77 1 976 472 238 127 0 chr3 51354345 51354471 -108245312 - B3A SINE B2 -55 143 2 1 976 455 241 153 0 chr3 51355323 51355460 -108244323 - B3 SINE B2 0 216 59 1 976 237 299 63 71 chr3 51356505 51356543 -108243240 + PB1 SINE Alu 3 101 -26 1 976 260 266 62 12 chr3 51356543 51356623 -108243160 + ID_B1 SINE B4 138 221 -3 1 976 201 158 0 0 chr3 51357392 51357430 -108242353 + A-rich Low_complexity Low_complexity 5 42 0 1 976 438 20 0 0 chr3 51358747 51358798 -108240985 + (TC)n Simple_repeat Simple_repeat 1 51 0 1 976 309 203 43 0 chr3 51358913 51358982 -108240801 - B1F SINE Alu -48 101 30 1 976 455 252 174 0 chr3 51359050 51359165 -108240618 - RSINE1 SINE B4 -28 137 3 1 976 355 266 79 16 chr3 51359200 51359326 -108240457 + B1F SINE Alu 2 135 -14 1 976 591 74 0 0 chr3 51359450 51359531 -108240252 + (TG)n Simple_repeat Simple_repeat 1 81 0 1 976 443 236 84 9 chr3 51359590 51359697 -108240086 + B1F1 SINE Alu 14 128 -21 1 976 258 301 42 58 chr3 51359597 51359717 -108240066 + ID_B1 SINE B4 107 224 0 1 976 1457 170 94 97 chr3 51359836 51360239 -108239544 + RMER16 LTR ERVK 132 533 0 1 976 369 0 0 0 chr3 51360365 51360406 -108239377 + (TA)n Simple_repeat Simple_repeat 1 41 0 1 976 508 185 55 18 chr3 51360587 51360697 -108239086 + B3 SINE B2 2 115 -101 1 976 378 0 0 0 chr3 51360736 51360778 -108239005 + (CA)n Simple_repeat Simple_repeat 1 42 0 1 976 514 221 40 81 chr3 51360817 51360965 -108238818 + B1F SINE Alu 2 143 -6 1 976 244 203 83 19 chr3 51361039 51361132 -108238651 + MIR SINE MIR 84 178 -90 1 976 415 248 128 0 chr3 51361490 51361599 -108238184 - B3 SINE B2 -88 128 6 1 976 246 314 15 110 chr3 51361609 51361745 -108238038 - PB1 SINE Alu -4 123 1 1 976 360 43 0 0 chr3 51361843 51361889 -108237894 + (GA)n Simple_repeat Simple_repeat 2 47 0 1 976 573 182 88 75 chr3 51362281 51362441 -108237342 - ID_B1 SINE B4 0 224 63 1 976 790 206 10 5 chr3 51362557 51362745 -108237038 + B3 SINE B2 1 191 -7 1 976 204 40 0 0 chr3 51363550 51363575 -108236208 + (A)n Simple_repeat Simple_repeat 1 25 0 1 976 297 0 0 0 chr3 51363862 51363895 -108235888 + (T)n Simple_repeat Simple_repeat 1 33 0 1 976 22 61 0 43 chr3 51364204 51364273 -108235510 + GC_rich Low_complexity Low_complexity 1 66 0 1 976 243 88 0 0 chr3 51364581 51364615 -108235168 + (GGA)n Simple_repeat Simple_repeat 1 34 0 1 976 668 281 42 28 chr3 51365976 51366192 -108233591 - ID_B1 SINE B4 0 224 6 1 976 738 144 50 50 chr3 51366239 51366378 -108233405 + B1_Mus2 SINE Alu 5 143 -4 1 976 562 209 29 119 chr3 51366820 51366892 -108232891 - B3A SINE B2 -5 193 129 1 976 297 0 0 0 chr3 51366892 51366925 -108232858 + (TG)n Simple_repeat Simple_repeat 2 34 0 1 976 562 187 37 104 chr3 51366925 51367029 -108232754 - B3A SINE B2 -55 143 44 1 976 277 178 0 0 chr3 51367121 51367166 -108232617 - B4 SINE B4 -79 213 169 1 976 248 339 196 0 chr3 51367166 51367233 -108232550 - B1_Mm SINE Alu -13 134 1 1 976 315 139 236 0 chr3 51367975 51368047 -108231736 - URR1B DNA MER1_type 0 225 137 1 976 201 39 0 0 chr3 51368084 51368110 -108231673 + (T)n Simple_repeat Simple_repeat 1 26 0 1 976 327 310 109 23 chr3 51368514 51368689 -108231094 - ZP3AR Satellite Satellite 0 212 23 1 976 1189 203 5 0 chr3 51369139 51369346 -108230437 - B3 SINE B2 -7 209 2 1 976 509 229 73 8 chr3 51369372 51369495 -108230288 - B1F SINE Alu -8 141 11 1 976 205 86 0 28 chr3 51369518 51369554 -108230229 + (TTTTTA)n Simple_repeat Simple_repeat 3 37 0 1 976 284 265 73 3 chr3 51369562 51369665 -108230118 - PB1D10 SINE Alu -7 113 3 1 976 411 193 267 8 chr3 51369725 51369845 -108229938 + B3A SINE B2 2 152 -46 1 976 737 253 48 135 chr3 51371113 51371424 -108228359 + B4 SINE B4 1 284 -8 1 976 383 69 35 0 chr3 51371729 51371787 -108227996 + (TTTC)n Simple_repeat Simple_repeat 3 62 0 1 976 1303 105 10 16 chr3 51371789 51371982 -108227801 - B2_Mm2 SINE B2 0 195 4 1 976 552 30 0 0 chr3 51371982 51372048 -108227735 + (TCCC)n Simple_repeat Simple_repeat 2 67 0 1 976 180 0 0 0 chr3 51372048 51372067 -108227716 + (TTTC)n Simple_repeat Simple_repeat 2 21 0 1 976 786 120 8 0 chr3 51372069 51372186 -108227597 - B1_Mus2 SINE Alu -7 140 23 1 976 468 35 0 0 chr3 51373321 51373379 -108226404 + (TG)n Simple_repeat Simple_repeat 1 58 0 1 976 1044 272 65 4 chr3 51373381 51373643 -108226140 - B4A SINE B4 -6 286 9 1 976 515 265 105 8 chr3 51373649 51373782 -108226001 - B1F SINE Alu 0 149 4 1 976 207 0 0 0 chr3 51373785 51373808 -108225975 + (T)n Simple_repeat Simple_repeat 1 23 0 1 976 1318 53 65 0 chr3 51373977 51374146 -108225637 - B2_Mm1a SINE B2 -1 192 13 1 976 325 288 54 25 chr3 51374168 51374331 -108225452 + MTE2a LTR MaLR 159 340 -39 1 976 221 162 0 0 chr3 51374465 51374502 -108225281 - PB1D7 SINE Alu -2 118 82 1 976 374 244 0 62 chr3 51375384 51375480 -108224303 - PB1D7 SINE Alu -2 118 29 1 976 1276 41 0 0 chr3 51375535 51375682 -108224101 - B1_Mus1 SINE Alu 0 148 2 1 976 602 276 18 66 chr3 51375874 51376041 -108223742 + RSINE1 SINE B4 6 164 -1 1 976 25 0 0 0 chr3 51376067 51376092 -108223691 + AT_rich Low_complexity Low_complexity 1 25 0 1 976 450 196 0 0 chr3 51376785 51376877 -108222906 + (CACG)n Simple_repeat Simple_repeat 2 93 0 1 976 1079 50 35 21 chr3 51376935 51377079 -108222704 + B1_Mus2 SINE Alu 1 146 -1 1 976 1649 32 0 0 chr3 51377416 51377606 -108222177 - B2_Mm1a SINE B2 -2 191 2 1 976 509 300 75 6 chr3 51378311 51378472 -108221311 + ID_B1 SINE B4 53 224 0 1 976 231 262 174 58 chr3 51378357 51378495 -108221288 - YREP_Mm Unknown Unknown -1516 296 143 1 976 232 246 0 0 chr3 51378556 51378625 -108221158 + T-rich Low_complexity Low_complexity 1 69 0 1 976 207 69 0 0 chr3 51378643 51378672 -108221111 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1 976 583 211 75 43 chr3 51378918 51379106 -108220677 - B3A SINE B2 0 198 5 1 976 1535 59 0 5 chr3 51379240 51379427 -108220356 + B2_Mm2 SINE B2 1 186 -9 1 976 22 35 0 0 chr3 51379429 51379458 -108220325 + AT_rich Low_complexity Low_complexity 1 29 0 1 976 1020 233 57 70 chr3 51379462 51379762 -108220021 + ORR1E LTR MaLR 64 359 0 1 976 210 243 51 51 chr3 51379944 51380022 -108219761 + MIR SINE MIR 63 140 -122 1 977 23 0 0 0 chr3 51380322 51380345 -108219438 + AT_rich Low_complexity Low_complexity 1 23 0 1 977 409 326 0 43 chr3 51380661 51380802 -108218981 - ID_B1 SINE B4 -6 218 84 1 977 339 241 36 12 chr3 51380919 51381003 -108218780 - ID_B1 SINE B4 -132 92 7 1 977 459 0 0 0 chr3 51381952 51382003 -108217780 + (TC)n Simple_repeat Simple_repeat 1 51 0 1 977 198 0 0 0 chr3 51382543 51382565 -108217218 + (TG)n Simple_repeat Simple_repeat 1 22 0 1 977 256 220 0 0 chr3 51382670 51382720 -108217063 - MER5A DNA MER1_type -6 183 134 1 977 482 266 0 0 chr3 51382725 51382838 -108216945 + PB1D10 SINE Alu 3 115 -2 1 977 876 295 20 4 chr3 51382856 51383101 -108216682 + B4A SINE B4 2 250 -42 1 977 1469 80 5 0 chr3 51383150 51383338 -108216445 - B2_Mm1t SINE B2 -4 189 1 1 977 278 212 30 0 chr3 51383354 51383420 -108216363 - MLT1A0 LTR MaLR -24 366 299 1 977 287 280 0 26 chr3 51383536 51383613 -108216170 - MLT1A0 LTR MaLR -281 84 10 1 977 768 204 189 22 chr3 51383732 51383917 -108215866 - ID_B1 SINE B4 -8 216 1 1 977 222 37 0 0 chr3 51384097 51384124 -108215659 + (TAA)n Simple_repeat Simple_repeat 1 27 0 1 977 2066 216 95 7 chr3 51384172 51384633 -108215150 + RMER20A LTR ERVK 15 516 0 1 977 715 226 150 14 chr3 51385113 51385333 -108214450 - B4A SINE B4 -41 251 2 1 977 1166 87 12 0 chr3 51385361 51385522 -108214261 + B2_Mm1t SINE B2 17 179 -14 1 977 392 46 28 48 chr3 51385573 51385680 -108214103 + B2_Mm2 SINE B2 47 187 -8 1 977 297 0 0 0 chr3 51385783 51385816 -108213967 + (CA)n Simple_repeat Simple_repeat 2 34 0 1 977 704 157 33 0 chr3 51385911 51386032 -108213751 - B1_Mus1 SINE Alu -23 125 1 1 977 351 248 59 10 chr3 51386032 51386134 -108213649 - MER2 DNA MER2_type -145 200 94 1 977 386 267 80 80 chr3 51386333 51386496 -108213287 - RSINE1 SINE B4 0 165 3 1 977 207 0 0 0 chr3 51386531 51386554 -108213229 + (CAGA)n Simple_repeat Simple_repeat 2 24 0 1 977 219 255 121 50 chr3 51386833 51386932 -108212851 + MIRc SINE MIR 37 142 -126 1 977 478 274 189 0 chr3 51388208 51388361 -108211422 + ORR1D2 LTR MaLR 178 359 -11 1 977 25 31 0 0 chr3 51389928 51389960 -108209823 + AT_rich Low_complexity Low_complexity 1 32 0 1 977 192 77 0 0 chr3 51389960 51389986 -108209797 + (TGG)n Simple_repeat Simple_repeat 1 26 0 1 977 494 308 0 15 chr3 51389987 51390119 -108209664 - RSINE1 SINE B4 -33 132 3 1 977 252 0 0 0 chr3 51390636 51390664 -108209119 + (TTCA)n Simple_repeat Simple_repeat 3 30 0 1 977 225 0 0 0 chr3 51390732 51390757 -108209026 + (T)n Simple_repeat Simple_repeat 1 25 0 1 977 389 339 23 8 chr3 51390843 51390871 -108208912 - RSINE1 SINE B4 -29 136 110 1 977 708 89 0 0 chr3 51390871 51390972 -108208811 + (GA)n Simple_repeat Simple_repeat 1 101 0 1 977 389 339 23 8 chr3 51390972 51391074 -108208709 - RSINE1 SINE B4 -56 109 5 1 977 239 191 0 0 chr3 51392013 51392055 -108207728 + RMER30 DNA MER1_type 126 167 -35 1 977 441 54 0 0 chr3 51392172 51392228 -108207555 + (TTCTC)n Simple_repeat Simple_repeat 2 57 0 1 977 307 98 0 0 chr3 51392228 51392269 -108207514 + (TTTC)n Simple_repeat Simple_repeat 3 43 0 1 977 240 196 0 0 chr3 51392269 51392323 -108207460 - PB1D10 SINE Alu 0 120 67 1 977 881 77 0 0 chr3 51392594 51392711 -108207072 - B1_Mus1 SINE Alu -31 117 1 1 977 434 193 24 102 chr3 51392608 51392735 -108207048 - MT2B LTR ERVL -344 257 141 1 977 303 301 17 156 chr3 51392775 51392811 -108206972 + MLT1G3 LTR MaLR 134 156 -439 1 977 2710 128 30 53 chr3 51392811 51393280 -108206503 + RMER6B LTR ERVK 2 459 -2 1 977 303 301 17 156 chr3 51393280 51393416 -108206367 + MLT1G3 LTR MaLR 157 282 -313 1 977 1045 248 168 27 chr3 51393576 51393904 -108205879 + MTEb LTR MaLR 4 377 -2 1 977 244 186 0 0 chr3 51393904 51393946 -108205837 - MER68 LTR ERVL -227 336 295 1 977 233 312 129 0 chr3 51394043 51394136 -108205647 - MER68 LTR ERVL -456 107 3 1 977 1999 151 35 71 chr3 51395262 51395684 -108204099 - MTB_Mm LTR MaLR 0 407 1 1 977 567 324 18 0 chr3 51395868 51396038 -108203745 - MER5A DNA MER1_type 0 189 17 1 977 751 324 88 53 chr3 51396042 51396612 -108203171 - Charlie2b DNA MER1_type -134 2648 2059 1 977 388 278 117 16 chr3 51396677 51396805 -108202978 + ID_B1 SINE B4 84 224 0 1 977 1932 128 51 9 chr3 51397632 51397948 -108201835 + ORR1A4 LTR MaLR 1 329 0 1 977 10920 119 41 110 chr3 51397948 51400056 -108199727 + ORR1A4-int LTR MaLR 1 1963 0 1 977 2378 110 3 6 chr3 51400056 51400386 -108199397 + ORR1A4 LTR MaLR 1 329 0 1 977 24 32 0 0 chr3 51400893 51400924 -108198859 + AT_rich Low_complexity Low_complexity 1 31 0 1 977 953 226 31 31 chr3 51401943 51401984 -108197799 + B3 SINE B2 2 42 -174 1 977 3275 55 5 2 chr3 51401984 51402383 -108197400 - MTB LTR MaLR 0 400 1 1 977 953 226 31 31 chr3 51402383 51402537 -108197246 + B3 SINE B2 43 197 -19 1 977 1378 158 148 3 chr3 51403424 51403722 -108196061 + ORR1C1 LTR MaLR 38 378 0 1 977 627 51 0 0 chr3 51403877 51403956 -108195827 + (TTTTC)n Simple_repeat Simple_repeat 4 82 0 1 977 276 289 41 72 chr3 51403978 51404172 -108195611 - Lx8 LINE L1 -50 7423 7236 1 977 360 0 0 0 chr3 51404183 51404223 -108195560 + (TTTTA)n Simple_repeat Simple_repeat 2 41 0 1 977 585 219 101 0 chr3 51404223 51404342 -108195441 - B1_Mur1 SINE Alu -14 135 5 1 977 281 315 58 58 chr3 51404342 51404378 -108195405 - B4 SINE B4 -80 212 58 1 977 423 174 73 42 chr3 51404482 51404578 -108195205 - RSINE1 SINE B4 -64 101 3 1 977 688 125 0 139 chr3 51405448 51405606 -108194177 + ORR1B1 LTR MaLR 41 176 -218 1 977 266 172 31 0 chr3 51405609 51405673 -108194110 + G-rich Low_complexity Low_complexity 3 68 0 1 977 1228 126 51 9 chr3 51405674 51405891 -108193892 + ORR1A4 LTR MaLR 104 329 0 1 977 292 286 11 21 chr3 51405976 51406069 -108193714 + CT-rich Low_complexity Low_complexity 3 94 0 1 977 357 267 44 44 chr3 51406073 51406210 -108193573 - B1F SINE Alu -1 148 12 1 977 312 27 0 0 chr3 51406212 51406249 -108193534 + (TG)n Simple_repeat Simple_repeat 1 37 0 1 977 234 276 17 0 chr3 51406254 51406312 -108193471 - MIR SINE MIR -33 229 171 1 977 1676 31 0 0 chr3 51406320 51406512 -108193271 + B2_Mm1a SINE B2 2 193 0 1 977 654 260 19 13 chr3 51406566 51406722 -108193061 - RSINE1 SINE B4 0 165 9 1 977 345 312 84 7 chr3 51406730 51406872 -108192911 - MIR SINE MIR -81 181 29 1 977 242 235 44 0 chr3 51406974 51407042 -108192741 + ID4_ SINE ID 3 73 -10 1 977 828 218 6 22 chr3 51407192 51407375 -108192408 + B3A SINE B2 3 182 -16 1 977 634 269 131 6 chr3 51407439 51407622 -108192161 + ID_B1 SINE B4 19 224 0 1 977 212 135 54 0 chr3 51407622 51407659 -108192124 + GA-rich Low_complexity Low_complexity 4 42 0 1 977 34 42 0 0 chr3 51408172 51408220 -108191563 + AT_rich Low_complexity Low_complexity 1 48 0 1 977 305 320 117 23 chr3 51408220 51408348 -108191435 - RSINE1 SINE B4 -17 148 9 1 977 1741 237 78 78 chr3 51408517 51408812 -108190971 - Lx6 LINE L1 -8 7452 7181 1 977 258 32 0 0 chr3 51408812 51408843 -108190940 + (CA)n Simple_repeat Simple_repeat 2 32 0 1 977 1741 237 78 78 chr3 51408843 51409063 -108190720 - Lx6 LINE L1 -280 7180 6939 1 977 6557 155 25 13 chr3 51409075 51409889 -108189894 - L1_Mur3 LINE L1 -778 5102 4276 1 977 207 0 0 0 chr3 51409889 51409912 -108189871 + (TTG)n Simple_repeat Simple_repeat 2 24 0 1 977 6557 155 25 13 chr3 51409912 51410312 -108189471 - L1_Mur3 LINE L1 -1605 4275 3875 1 977 363 29 0 20 chr3 51410327 51410384 -108189399 + B1_Mus1 SINE Alu 1 51 -66 1 977 247 136 41 96 chr3 51410384 51410399 -108189384 + B4A SINE B4 86 153 -139 1 977 787 228 94 16 chr3 51411145 51411337 -108188446 - ID_B1 SINE B4 -16 208 2 1 977 297 133 0 16 chr3 51411350 51411411 -108188372 - B2_Mm2 SINE B2 -2 193 134 1 977 249 163 0 39 chr3 51411397 51411448 -108188335 - B3 SINE B2 -107 109 61 1 977 1117 107 77 0 chr3 51411484 51411653 -108188130 - B2_Mm2 SINE B2 -13 182 1 1 977 600 14 0 0 chr3 51411673 51411742 -108188041 + (TC)n Simple_repeat Simple_repeat 2 70 0 1 977 234 0 0 0 chr3 51411742 51411767 -108188016 + (TG)n Simple_repeat Simple_repeat 1 26 0 1 977 489 295 108 0 chr3 51411777 51411906 -108187877 - RSINE1 SINE B4 -21 144 2 1 977 362 290 11 0 chr3 51411921 51412014 -108187769 - PB1D10 SINE Alu -21 96 3 1 977 296 351 9 9 chr3 51411922 51412034 -108187749 - ID_B1 SINE B4 -48 176 65 1 977 1931 154 82 8 chr3 51412225 51412263 -108187520 - ORR1B1 LTR MaLR -15 379 342 1 977 5582 51 68 11 chr3 51412263 51412982 -108186801 - L1Md_F2 LINE L1 -1 6581 5822 1 977 1931 154 82 8 chr3 51412982 51413296 -108186487 - ORR1B1 LTR MaLR -53 341 2 1 977 462 307 57 139 chr3 51413296 51413626 -108186157 + MLT1A LTR MaLR 58 358 -16 1 977 343 286 72 36 chr3 51414212 51414350 -108185433 + ORR1E LTR MaLR 7 149 -210 1 977 1099 111 0 20 chr3 51414562 51415010 -108184773 + (TG)n Simple_repeat Simple_repeat 1 438 0 1 977 550 291 50 37 chr3 51415013 51415429 -108184354 + Lx8 LINE L1 7030 7471 -2 1 977 812 154 14 42 chr3 51415461 51415603 -108184180 - B1_Mus1 SINE Alu 0 148 11 1 977 312 242 0 0 chr3 51416330 51416462 -108183321 + GA-rich Low_complexity Low_complexity 1 132 0 1 977 333 0 0 0 chr3 51416745 51416782 -108183001 + (TC)n Simple_repeat Simple_repeat 2 38 0 1 977 270 0 0 0 chr3 51416782 51416811 -108182972 + (TG)n Simple_repeat Simple_repeat 1 30 0 1 977 968 258 29 40 chr3 51416820 51417095 -108182688 - B4A SINE B4 -20 272 1 1 977 452 370 94 28 chr3 51417120 51417406 -108182377 - ORR1E LTR MaLR 0 359 55 1 977 238 235 198 0 chr3 51418222 51418303 -108181480 + RMER21B LTR ERV1 480 576 -266 1 977 4478 137 18 94 chr3 51418459 51419439 -108180344 - RMER17A2 LTR ERVK 0 906 1 1 977 546 203 16 47 chr3 51419659 51419788 -108179995 + RMER20B LTR ERVK 1 125 -502 1 977 3023 3 5 123 chr3 51420104 51420520 -108179263 + IAPLTR1_Mm LTR ERVK 1 367 0 1 977 56123 28 14 4 chr3 51420522 51427060 -108172723 + IAPEz-int LTR ERVK 3 6478 -3 1 977 3023 3 5 123 chr3 51427064 51427480 -108172303 + IAPLTR1_Mm LTR ERVK 1 367 0 1 977 414 114 0 0 chr3 51427665 51427744 -108172039 + (TC)n Simple_repeat Simple_repeat 2 80 0 1 977 414 0 0 0 chr3 51427744 51427790 -108171993 + (CA)n Simple_repeat Simple_repeat 1 46 0 1 977 521 273 45 0 chr3 51427791 51427901 -108171882 - RSINE1 SINE B4 -48 117 3 1 977 599 284 71 15 chr3 51427909 51428106 -108171677 - B4 SINE B4 -84 208 1 1 977 1350 76 32 5 chr3 51428693 51428878 -108170905 - B2_Mm2 SINE B2 -4 191 2 1 977 405 0 0 0 chr3 51429033 51429078 -108170705 + (TG)n Simple_repeat Simple_repeat 1 45 0 1 977 378 94 0 0 chr3 51429448 51429512 -108170271 + (CA)n Simple_repeat Simple_repeat 2 65 0 1 977 537 211 78 52 chr3 51429660 51429775 -108170008 + PB1D9 SINE Alu 3 120 0 1 977 768 168 16 53 chr3 51429785 51429974 -108169809 + Lx4B LINE L1 6877 7058 0 1 977 4553 211 41 49 chr3 51430202 51431246 -108168537 + RMER1B Other Other 26 1061 -5 1 977 489 272 114 67 chr3 51431756 51432040 -108167743 - MLT1A1 LTR MaLR -3 405 72 1 977 951 147 0 0 chr3 51432152 51432329 -108167454 + (TG)n Simple_repeat Simple_repeat 1 177 0 1 977 1306 63 74 0 chr3 51432383 51432558 -108167225 - B2_Mm2 SINE B2 -6 189 2 1 977 329 268 115 9 chr3 51432564 51432632 -108167151 - B4A SINE B4 -70 222 146 1 977 288 0 0 0 chr3 51432632 51432664 -108167119 + (TG)n Simple_repeat Simple_repeat 2 33 0 1 977 329 268 115 9 chr3 51432664 51432708 -108167075 - B4A SINE B4 -147 145 99 1 977 486 252 16 25 chr3 51433512 51433634 -108166149 + B4 SINE B4 112 232 -60 1 977 697 302 83 89 chr3 51433947 51434274 -108165509 + MTEa LTR MaLR 16 340 -39 1 977 690 189 47 0 chr3 51434283 51434410 -108165373 - B1_Mus2 SINE Alu -1 146 14 1 977 269 298 48 0 chr3 51434649 51434733 -108165050 + MLT1L LTR MaLR 119 206 -404 1 977 2537 131 138 24 chr3 51434865 51435685 -108164098 + RLTR25B LTR ERVK 1 1028 0 1 977 380 201 117 93 chr3 51436409 51436623 -108163160 - Charlie5 DNA MER1_type 0 2624 2406 1 977 995 216 39 0 chr3 51436626 51436834 -108162949 - B3 SINE B2 0 216 1 1 977 1205 253 130 10 chr3 51437012 51437319 -108162464 + MTEa LTR MaLR 36 379 0 1 977 1743 186 53 34 chr3 51437356 51437712 -108162071 - ORR1D2 LTR MaLR 0 370 8 1 977 204 67 0 0 chr3 51438179 51438209 -108161574 + (GAAAA)n Simple_repeat Simple_repeat 5 34 0 1 977 227 290 16 0 chr3 51438850 51438912 -108160871 + (TATATG)n Simple_repeat Simple_repeat 3 65 0 1 977 606 273 25 155 chr3 51438912 51439151 -108160632 - MTEb LTR MaLR -8 371 176 1 977 2153 198 114 19 chr3 51439151 51439634 -108160149 - RLTR24 LTR ERV1 0 529 1 1 977 606 241 23 87 chr3 51439634 51439752 -108160031 - MTEb LTR MaLR -204 175 63 1 977 300 269 213 0 chr3 51439752 51439775 -108160008 - MLT2B5 LTR ERVL -395 322 152 1 977 975 87 72 20 chr3 51439805 51439958 -108159825 + URR1B DNA MER1_type 65 225 0 1 977 309 316 22 156 chr3 51439982 51440017 -108159766 - RSINE1 SINE B4 -38 127 101 1 977 748 198 172 17 chr3 51440017 51440197 -108159586 - B3 SINE B2 -4 212 5 1 977 309 316 22 156 chr3 51440197 51440296 -108159487 - RSINE1 SINE B4 -65 100 11 1 977 207 0 0 0 chr3 51440301 51440324 -108159459 + (CCCCCT)n Simple_repeat Simple_repeat 1 23 0 1 977 621 0 0 0 chr3 51440324 51440392 -108159391 + (TTC)n Simple_repeat Simple_repeat 3 71 0 1 977 258 32 0 0 chr3 51440572 51440603 -108159180 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 1 977 327 221 93 0 chr3 51441108 51441194 -108158589 - RCHARR1 DNA MER1_type -121 853 760 1 977 1194 255 63 60 chr3 51441205 51441602 -108158181 - RCHARR1 DNA MER1_type -532 442 45 1 977 506 307 21 14 chr3 51441791 51441933 -108157850 - ID_B1 SINE B4 -81 143 1 1 977 23 0 0 0 chr3 51442101 51442124 -108157659 + AT_rich Low_complexity Low_complexity 1 23 0 1 977 301 296 74 0 chr3 51442352 51442460 -108157323 + RMER5 LTR ERV1 45 160 -374 1 977 448 283 149 20 chr3 51442476 51442671 -108157112 + RMER5 LTR ERV1 312 531 -3 1 977 628 244 114 40 chr3 51443339 51443540 -108156243 + B3 SINE B2 1 216 0 1 977 365 276 104 42 chr3 51443704 51443897 -108155886 - MLT1B LTR MaLR -8 382 178 1 977 399 291 172 64 chr3 51443992 51444430 -108155353 - RLTR21 LTR ERVK -189 1215 715 1 977 1937 158 0 95 chr3 51444596 51444987 -108154796 - ORR1B1 LTR MaLR 0 394 41 1 977 663 398 53 33 chr3 51445105 51445614 -108154169 - RLTR21 LTR ERVK -1053 519 1 1 977 1067 252 42 39 chr3 51445723 51446053 -108153730 + Lx6 LINE L1 7104 7434 -26 1 977 1217 74 0 0 chr3 51446092 51446240 -108153543 + B1_Mus1 SINE Alu 1 148 0 1 977 992 311 4 11 chr3 51446588 51446848 -108152935 + B4 SINE B4 15 272 -20 1 977 382 308 47 27 chr3 51447772 51447922 -108151861 + ID_B1 SINE B4 70 222 -2 1 977 370 227 27 0 chr3 51447932 51448007 -108151776 + ID4_ SINE ID 3 79 -4 1 977 908 191 7 0 chr3 51448027 51448174 -108151609 + B1_Mur2 SINE Alu 2 149 0 1 977 1996 108 67 3 chr3 51448519 51448816 -108150967 + ORR1A3 LTR MaLR 3 318 -8 1 977 201 147 0 0 chr3 51449243 51449277 -108150506 + (CCCCCT)n Simple_repeat Simple_repeat 6 39 0 1 977 284 298 71 13 chr3 51449338 51449494 -108150289 - B4 SINE B4 0 292 73 1 977 354 259 69 113 chr3 51449591 51450002 -108149781 - RLTR20A LTR ERVK -219 358 19 1 977 415 298 120 7 chr3 51449994 51450136 -108149647 - B4 SINE B4 -132 160 3 1 977 237 298 82 31 chr3 51450450 51450547 -108149236 - L1M LINE L1 -983 5361 5260 1 977 929 307 121 9 chr3 51450778 51451100 -108148683 - MTEa LTR MaLR -11 368 11 1 977 227 342 0 0 chr3 51451111 51451187 -108148596 + (TG)n Simple_repeat Simple_repeat 1 76 0 1 977 784 242 11 27 chr3 51451188 51451371 -108148412 - B3A SINE B2 -17 181 2 1 977 574 205 43 64 chr3 51451393 51451534 -108148249 + MTE2a LTR MaLR 2 139 -240 1 977 512 213 9 18 chr3 51451528 51451638 -108148145 + MTE2a LTR MaLR 271 379 0 1 977 189 94 0 0 chr3 51451751 51451783 -108148000 + (GTGTG)n Simple_repeat Simple_repeat 4 35 0 1 977 225 229 37 28 chr3 51451912 51452020 -108147763 + (ATGTG)n Simple_repeat Simple_repeat 1 109 0 1 977 216 0 0 0 chr3 51452647 51452671 -108147112 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1 977 543 209 35 0 chr3 51452671 51452777 -108147006 - PB1D9 SINE Alu -9 111 2 1 977 464 250 19 9 chr3 51453104 51453209 -108146574 - PB1D9 SINE Alu -14 106 1 1 977 330 250 103 70 chr3 51454111 51454386 -108145397 - MLT1G LTR MaLR -1 594 214 1 977 341 358 61 74 chr3 51454586 51454882 -108144901 + LTR16D LTR ERVL 331 622 -29 1 977 904 173 28 28 chr3 51455131 51455309 -108144474 - MER20 DNA MER1_type -3 216 39 1 977 441 54 0 0 chr3 51455496 51455552 -108144231 + (CA)n Simple_repeat Simple_repeat 1 56 0 1 977 215 264 0 0 chr3 51456752 51456805 -108142978 + G-rich Low_complexity Low_complexity 1 53 0 1 977 198 0 0 0 chr3 51457390 51457412 -108142371 + (CG)n Simple_repeat Simple_repeat 2 23 0 1 977 393 39 0 0 chr3 51457412 51457462 -108142321 + (CA)n Simple_repeat Simple_repeat 1 51 0 1 977 838 168 22 0 chr3 51457913 51458050 -108141733 + B1_Mur3 SINE Alu 2 141 -8 1 977 324 0 0 0 chr3 51458528 51458564 -108141219 + (T)n Simple_repeat Simple_repeat 1 36 0 1 977 214 333 39 0 chr3 51458579 51458681 -108141102 + MIRb SINE MIR 102 207 -61 1 977 329 180 7 0 chr3 51458840 51458910 -108140873 + B3 SINE B2 2 74 -124 1 977 216 0 0 0 chr3 51458937 51458961 -108140822 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1 977 1095 61 8 0 chr3 51458978 51459110 -108140673 - B1_Mus1 SINE Alu -15 133 1 1 977 423 0 0 0 chr3 51459230 51459277 -108140506 + (CA)n Simple_repeat Simple_repeat 1 47 0 1 977 378 292 25 149 chr3 51459287 51459448 -108140335 - B3 SINE B2 -75 141 1 1 977 244 279 11 11 chr3 51459911 51459998 -108139785 + (TG)n Simple_repeat Simple_repeat 1 87 0 1 977 444 82 0 0 chr3 51460022 51460083 -108139700 + (TG)n Simple_repeat Simple_repeat 2 62 0 1 977 245 257 42 28 chr3 51460841 51460913 -108138870 - MTEb LTR MaLR -14 365 293 1 977 938 103 0 0 chr3 51461102 51461228 -108138555 - B1_Mus2 SINE Alu -10 137 12 1 977 442 355 0 0 chr3 51461349 51461515 -108138268 + (TATTG)n Simple_repeat Simple_repeat 5 170 0 1 977 222 325 0 0 chr3 51462509 51462589 -108137194 + ID4_ SINE ID 28 107 -45 1 977 353 326 20 59 chr3 51462655 51462808 -108136975 + RSINE1 SINE B4 16 162 -3 1 977 280 241 6 48 chr3 51462830 51462996 -108136787 + (CATA)n Simple_repeat Simple_repeat 4 162 0 1 977 249 293 24 0 chr3 51463001 51463083 -108136700 + (CA)n Simple_repeat Simple_repeat 2 85 0 1 977 460 205 17 35 chr3 51463086 51463258 -108136525 + (CATA)n Simple_repeat Simple_repeat 3 171 0 1 977 395 330 8 0 chr3 51463264 51463382 -108136401 + (CA)n Simple_repeat Simple_repeat 2 120 0 1 977 22 0 0 0 chr3 51463804 51463826 -108135957 + AT_rich Low_complexity Low_complexity 1 22 0 1 977 351 0 0 0 chr3 51464539 51464578 -108135205 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 977 216 165 8 42 chr3 51464791 51464911 -108134872 + (TG)n Simple_repeat Simple_repeat 2 117 0 1 977 309 169 0 0 chr3 51465244 51465303 -108134480 + (TG)n Simple_repeat Simple_repeat 2 60 0 1 977 432 0 0 0 chr3 51465303 51465351 -108134432 + (GA)n Simple_repeat Simple_repeat 1 48 0 1 977 390 108 0 0 chr3 51466393 51466458 -108133325 + (GA)n Simple_repeat Simple_repeat 2 66 0 1 977 187 279 189 54 chr3 51467584 51467732 -108132051 + L3 LINE CR1 2209 2376 -2113 1 977 1166 75 0 0 chr3 51467930 51468068 -108131715 + B1_Mus1 SINE Alu 2 139 -9 1 977 209 57 0 28 chr3 51468068 51468104 -108131679 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1 977 299 254 0 0 chr3 51468128 51468187 -108131596 + B4 SINE B4 27 85 -207 1 977 180 0 0 0 chr3 51468197 51468217 -108131566 + (CCAA)n Simple_repeat Simple_repeat 1 20 0 1 977 544 255 28 0 chr3 51468238 51468344 -108131439 + B4 SINE B4 85 193 -99 1 977 834 106 0 0 chr3 51468958 51469081 -108130702 + (CA)n Simple_repeat Simple_repeat 2 124 0 1 977 495 0 0 0 chr3 51469081 51469135 -108130648 + (GA)n Simple_repeat Simple_repeat 2 56 0 1 977 322 301 88 9 chr3 51469241 51469355 -108130428 - L1M5 LINE L1 -2372 3774 3652 1 977 234 319 104 37 chr3 51469962 51470336 -108129447 - HAL1 LINE L1 -405 2102 1704 1 977 232 270 27 13 chr3 51470347 51470422 -108129361 - MTE2a LTR MaLR -17 362 287 1 977 186 189 0 0 chr3 51472970 51473007 -108126776 + GA-rich Low_complexity Low_complexity 3 39 0 1 977 264 30 0 0 chr3 51473048 51473081 -108126702 + (TG)n Simple_repeat Simple_repeat 2 34 0 1 977 329 164 34 25 chr3 51473230 51473349 -108126434 + (TG)n Simple_repeat Simple_repeat 1 120 0 1 977 631 256 141 30 chr3 51473349 51473611 -108126172 - B4A SINE B4 0 292 2 1 977 250 262 97 53 chr3 51473677 51473790 -108125993 - RLTR26 LTR ERVK -357 285 168 1 977 3025 118 53 33 chr3 51474071 51474581 -108125202 - RLTR28 LTR ERVL -4 520 1 1 977 355 184 171 0 chr3 51474581 51474657 -108125126 - PB1D7 SINE Alu -22 98 10 1 977 607 186 18 0 chr3 51475179 51475292 -108124491 - ORR1D1 LTR MaLR 0 374 260 1 977 2315 84 10 0 chr3 51475297 51475605 -108124178 - ORR1A2 LTR MaLR -16 311 1 1 977 1240 199 37 26 chr3 51475605 51475849 -108123934 - ORR1D1 LTR MaLR -107 267 20 1 977 261 0 0 0 chr3 51475849 51475878 -108123905 + (TG)n Simple_repeat Simple_repeat 1 29 0 1 977 1240 199 37 26 chr3 51475878 51475897 -108123886 - ORR1D1 LTR MaLR -355 19 1 1 977 230 118 0 0 chr3 51477014 51477048 -108122735 - MLT1J1 LTR MaLR -41 403 370 1 977 865 194 128 39 chr3 51478490 51478694 -108121089 + MTEa LTR MaLR 4 225 -154 1 977 200 94 31 0 chr3 51478702 51478734 -108121049 + (TGGGGG)n Simple_repeat Simple_repeat 4 36 0 1 977 291 28 0 0 chr3 51479037 51479073 -108120710 + (T)n Simple_repeat Simple_repeat 1 36 0 1 977 1953 136 88 0 chr3 51479189 51479497 -108120286 + MTC LTR MaLR 1 335 -86 1 977 818 225 77 22 chr3 51480814 51480996 -108118787 - B3 SINE B2 0 216 25 1 977 257 254 0 92 chr3 51481853 51481918 -108117865 + ID4 SINE ID 5 63 -20 1 977 243 310 40 38 chr3 51482103 51482280 -108117503 - MIR SINE MIR -2 274 94 1 977 506 219 141 138 chr3 51483231 51483522 -108116261 + B4A SINE B4 1 292 0 1 977 275 273 52 0 chr3 51483632 51483709 -108116074 - ID4_ SINE ID -1 82 2 1 977 1100 174 12 106 chr3 51483853 51483981 -108115802 - URR1B DNA MER1_type -3 222 104 1 977 1222 68 0 0 chr3 51483981 51484127 -108115656 + B1_Mus1 SINE Alu 1 146 -2 1 977 1100 174 12 106 chr3 51484127 51484243 -108115540 - URR1B DNA MER1_type -122 103 1 1 977 749 336 74 66 chr3 51484342 51485016 -108114767 - L1ME2z LINE L1 -283 6161 5466 1 977 877 147 37 0 chr3 51485016 51485152 -108114631 + B1_Mus2 SINE Alu 2 142 -5 1 977 213 39 0 0 chr3 51485153 51485179 -108114604 + (TAGA)n Simple_repeat Simple_repeat 4 29 0 1 977 749 336 74 66 chr3 51485179 51485232 -108114551 - L1ME2z LINE L1 -979 5465 5426 1 977 374 265 76 38 chr3 51485284 51485441 -108114342 - RSINE1 SINE B4 0 165 3 1 977 406 321 59 19 chr3 51485479 51485667 -108114116 - L1M4 LINE L1 -751 5395 5203 1 977 742 193 37 0 chr3 51486012 51486147 -108113636 - B1_Mur3 SINE Alu 0 149 10 1 977 225 0 0 0 chr3 51487607 51487632 -108112151 + (TTG)n Simple_repeat Simple_repeat 2 26 0 1 977 250 354 0 0 chr3 51487758 51487840 -108111943 + (CA)n Simple_repeat Simple_repeat 1 82 0 1 977 355 147 213 0 chr3 51488052 51488127 -108111656 - PB1D10 SINE Alu -7 110 20 1 977 419 212 182 0 chr3 51489345 51489444 -108110339 - PB1D9 SINE Alu -2 118 2 1 977 22 35 0 0 chr3 51489835 51489864 -108109919 + AT_rich Low_complexity Low_complexity 1 29 0 1 977 499 324 97 16 chr3 51490256 51490513 -108109270 - LTR16A1 LTR ERVL 0 456 179 1 977 360 0 0 0 chr3 51490743 51490783 -108109000 + (TG)n Simple_repeat Simple_repeat 1 40 0 1 977 812 208 0 13 chr3 51490783 51490934 -108108849 - RSINE1 SINE B4 -16 149 1 1 977 23 0 0 0 chr3 51491544 51491567 -108108216 + AT_rich Low_complexity Low_complexity 1 23 0 1 977 24 0 0 0 chr3 51491870 51491894 -108107889 + AT_rich Low_complexity Low_complexity 1 24 0 1 977 243 0 0 0 chr3 51492254 51492281 -108107502 + (TG)n Simple_repeat Simple_repeat 1 27 0 1 977 498 263 59 22 chr3 51495166 51495302 -108104481 + B1F SINE Alu 2 142 -7 1 977 262 205 13 13 chr3 51495683 51495762 -108104021 + C-rich Low_complexity Low_complexity 4 82 0 1 977 284 314 95 22 chr3 51496323 51496723 -108103060 - L1MB7 LINE L1 -28 6145 5712 1 977 473 49 49 0 chr3 51496750 51496831 -108102952 + (TA)n Simple_repeat Simple_repeat 1 85 0 1 977 184 347 56 0 chr3 51497290 51497362 -108102421 + MIRc SINE MIR 43 118 -150 1 977 261 0 0 0 chr3 51497602 51497631 -108102152 + (CAA)n Simple_repeat Simple_repeat 2 30 0 1 977 225 0 0 0 chr3 51497692 51497717 -108102066 + (A)n Simple_repeat Simple_repeat 1 25 0 1 977 663 257 90 86 chr3 51497831 51498121 -108101662 + B4 SINE B4 2 292 0 1 977 403 33 33 0 chr3 51499058 51499119 -108100664 + (TG)n Simple_repeat Simple_repeat 2 64 0 1 977 2647 121 8 15 chr3 51500898 51501293 -108098490 - ORR1B1 LTR MaLR 0 394 3 1 977 462 65 0 0 chr3 51501501 51501563 -108098220 + (CTG)n Simple_repeat Simple_repeat 2 63 0 2 977 306 0 0 0 chr3 51502288 51502322 -108097461 + (TG)n Simple_repeat Simple_repeat 2 35 0 3 977 215 194 127 16 chr3 51502540 51502603 -108097180 + L3b LINE CR1 325 394 -88 4 977 354 45 0 0 chr3 51503596 51503640 -108096143 + (TG)n Simple_repeat Simple_repeat 1 44 0 5 977 399 269 36 27 chr3 51503679 51503790 -108095993 - B3A SINE B2 -85 113 2 6 977 285 89 0 0 chr3 51504924 51504969 -108094814 + (GA)n Simple_repeat Simple_repeat 2 46 0 7 977 24 0 0 0 chr3 51505499 51505523 -108094260 + GC_rich Low_complexity Low_complexity 1 24 0 8 977 396 0 0 0 chr3 51506409 51506453 -108093330 + (TC)n Simple_repeat Simple_repeat 1 44 0 9 977 306 0 0 0 chr3 51506453 51506486 -108093297 + (CA)n Simple_repeat Simple_repeat 1 34 0 1 977 361 282 120 0 chr3 51506878 51506995 -108092788 + MER5A1 DNA MER1_type 36 166 0 1 977 230 339 15 76 chr3 51507482 51507613 -108092170 - MIRb SINE MIR -87 181 59 1 977 248 187 0 6 chr3 51508147 51508203 -108091580 + PB1D7 SINE Alu 67 132 -17 1 977 405 58 0 0 chr3 51508442 51508494 -108091289 + (TC)n Simple_repeat Simple_repeat 1 52 0 1 977 245 179 45 0 chr3 51508494 51508561 -108091222 + (CAGA)n Simple_repeat Simple_repeat 2 71 0 1 977 513 231 335 0 chr3 51508561 51508764 -108091019 - B4A SINE B4 -21 271 1 1 977 797 244 76 9 chr3 51508975 51509198 -108090585 + MER2 DNA MER2_type 108 345 0 1 977 598 279 36 21 chr3 51509217 51509411 -108090372 + B3A SINE B2 2 198 0 1 977 364 260 10 20 chr3 51510252 51510354 -108089429 + L1ME4a LINE L1 5753 5853 -271 1 977 276 30 0 0 chr3 51510431 51510464 -108089319 + (CA)n Simple_repeat Simple_repeat 1 33 0 2 977 764 201 7 0 chr3 51510491 51510630 -108089153 - B1_Mur1 SINE Alu -9 140 1 2 977 23 0 0 0 chr3 51510643 51510666 -108089117 + AT_rich Low_complexity Low_complexity 1 23 0 2 977 23 33 0 0 chr3 51510675 51510705 -108089078 + AT_rich Low_complexity Low_complexity 1 30 0 2 977 398 276 61 0 chr3 51510777 51510875 -108088908 - RSINE1 SINE B4 -45 120 17 2 977 643 195 114 0 chr3 51510923 51511046 -108088737 - ID_B1 SINE B4 -2 222 86 2 122 996 268 59 121 chr3 51511284 51511351 -108088432 - MTEa LTR MaLR 0 379 320 2 978 1130 0 59 0 chr3 51511351 51511521 -108088262 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 2 978 996 268 59 121 chr3 51511521 51511544 -108088239 - MTEa LTR MaLR -60 319 319 2 978 1125 0 55 0 chr3 51511544 51511709 -108088074 + (GGAA)n Simple_repeat Simple_repeat 2 175 0 2 978 1128 219 123 60 chr3 51511709 51512058 -108087725 - ORR1D1 LTR MaLR -1 373 3 3 978 996 268 59 121 chr3 51512058 51512281 -108087502 - MTEa LTR MaLR -60 319 90 2 978 207 0 0 0 chr3 51512281 51512304 -108087479 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 3 978 996 268 59 121 chr3 51512304 51512391 -108087392 - MTEa LTR MaLR -290 89 2 2 978 395 328 50 10 chr3 51513066 51513266 -108086517 + Lx8 LINE L1 7019 7226 -247 3 978 388 310 28 34 chr3 51513271 51513448 -108086335 + RMER15 LTR ERVL 388 563 -12 3 978 943 244 4 53 chr3 51513807 51514032 -108085751 - B4 SINE B4 0 292 79 3 978 399 21 0 0 chr3 51514038 51514086 -108085697 + (TG)n Simple_repeat Simple_repeat 2 49 0 3 978 267 330 43 52 chr3 51514086 51514201 -108085582 - RSINE1 SINE B4 -41 124 11 3 978 517 208 0 86 chr3 51514224 51514340 -108085443 - B4 SINE B4 -185 107 2 3 978 291 211 109 84 chr3 51515211 51515330 -108084453 + MT2B2 LTR ERVL 118 239 -345 3 978 560 226 0 19 chr3 51515259 51515367 -108084416 + PB1D10 SINE Alu 11 116 -1 3 978 643 307 58 76 chr3 51515439 51515714 -108084069 + B4A SINE B4 4 273 -19 3 978 656 130 4 82 chr3 51516131 51516389 -108083394 + (CA)n Simple_repeat Simple_repeat 1 237 0 4 978 1205 61 0 0 chr3 51517936 51518083 -108081700 + B1_Mus1 SINE Alu 2 148 0 4 978 690 140 0 0 chr3 51518201 51518315 -108081468 + (GAA)n Simple_repeat Simple_repeat 1 114 0 4 978 21 0 0 0 chr3 51518384 51518405 -108081378 + AT_rich Low_complexity Low_complexity 1 21 0 4 978 443 316 52 17 chr3 51518429 51518603 -108081180 - B4A SINE B4 0 292 113 4 978 231 36 0 0 chr3 51519608 51519636 -108080147 + (CATA)n Simple_repeat Simple_repeat 1 28 0 4 978 927 232 97 19 chr3 51519647 51519906 -108079877 - B4 SINE B4 -12 280 2 4 978 297 0 0 0 chr3 51519958 51519991 -108079792 + (TG)n Simple_repeat Simple_repeat 1 33 0 4 978 852 169 183 11 chr3 51520091 51520271 -108079512 - B3 SINE B2 -4 212 2 4 978 453 36 0 0 chr3 51521270 51521325 -108078458 + (TG)n Simple_repeat Simple_repeat 1 55 0 4 978 475 280 8 15 chr3 51521883 51522017 -108077766 - ID_B1 SINE B4 -4 220 88 5 978 459 0 0 0 chr3 51522060 51522111 -108077672 + (TG)n Simple_repeat Simple_repeat 1 51 0 5 978 389 277 0 10 chr3 51522333 51522435 -108077348 - PB1D10 SINE Alu -16 101 1 5 978 745 221 28 0 chr3 51522491 51522636 -108077147 - B1_Mur2 SINE Alu 0 149 1 5 978 180 0 0 0 chr3 51522912 51522932 -108076851 + (TG)n Simple_repeat Simple_repeat 1 20 0 5 978 293 159 0 16 chr3 51523679 51523743 -108076040 + CT-rich Low_complexity Low_complexity 1 63 0 5 978 257 230 117 39 chr3 51523743 51523820 -108075963 - BC1_Mm scRNA scRNA -51 101 19 5 978 2668 156 247 17 chr3 51524169 51524768 -108075015 - RMER19A LTR ERVK 0 737 1 5 978 655 251 23 0 chr3 51524948 51525119 -108074664 - L1MB4 LINE L1 -13 6167 5993 5 978 1127 186 34 14 chr3 51526221 51526428 -108073355 + B3 SINE B2 4 214 -2 5 978 364 320 48 8 chr3 51526488 51526614 -108073169 - B3 SINE B2 -1 215 85 6 978 308 267 37 56 chr3 51528571 51528678 -108071105 - PB1D10 SINE Alu -12 105 1 6 978 187 245 40 20 chr3 51528839 51528889 -108070894 + L3 LINE CR1 3966 4016 -473 6 978 2381 153 33 15 chr3 51530263 51530661 -108069122 + RMER20B LTR ERVK 12 416 -211 6 978 305 200 15 30 chr3 51530699 51530766 -108069017 + RMER20B LTR ERVK 562 627 0 6 978 237 191 0 78 chr3 51531064 51531115 -108068668 - tRNA-Ala-GCA tRNA tRNA -1 74 28 6 978 257 167 21 0 chr3 51531071 51531119 -108068664 - B4A SINE B4 -213 79 31 6 978 306 224 0 0 chr3 51531076 51531134 -108068649 - ID4 SINE ID -11 72 15 6 978 224 211 24 84 chr3 51531119 51531154 -108068629 - B2_Mm2 SINE B2 -117 78 1 6 978 960 155 0 13 chr3 51531182 51531332 -108068451 + B1_Mur3 SINE Alu 2 149 0 6 978 262 22 0 82 chr3 51531332 51531381 -108068402 + (CAAAA)n Simple_repeat Simple_repeat 1 45 0 6 978 402 21 0 0 chr3 51532617 51532664 -108067119 + (TG)n Simple_repeat Simple_repeat 1 47 0 7 978 1017 270 0 90 chr3 51532785 51533062 -108066721 + B4 SINE B4 24 275 -17 7 978 243 0 0 0 chr3 51533246 51533273 -108066510 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 7 978 516 299 52 29 chr3 51533782 51533992 -108065791 - B3 SINE B2 0 216 2 7 978 230 413 101 23 chr3 51534365 51534623 -108065160 + ORR1D2 LTR MaLR 79 356 -14 7 978 387 0 0 0 chr3 51535523 51535566 -108064217 + (TG)n Simple_repeat Simple_repeat 2 44 0 7 978 288 0 0 0 chr3 51536034 51536066 -108063717 + (TG)n Simple_repeat Simple_repeat 1 32 0 7 978 180 0 0 0 chr3 51536066 51536085 -108063698 + (CG)n Simple_repeat Simple_repeat 2 21 0 7 978 284 322 90 39 chr3 51536331 51536509 -108063274 - CR1_Mam LINE CR1 -437 1767 1581 7 978 283 315 22 0 chr3 51536810 51536902 -108062881 + (TG)n Simple_repeat Simple_repeat 2 95 0 7 978 983 293 46 46 chr3 51538995 51539345 -108060438 - ORR1E LTR MaLR -2 357 8 8 978 354 244 33 0 chr3 51539670 51539760 -108060023 - ID_B1 SINE B4 0 224 132 8 978 356 296 0 0 chr3 51539850 51539931 -108059852 - RSINE1 SINE B4 -32 133 53 8 978 383 336 0 9 chr3 51540107 51540215 -108059568 - PB1D10 SINE Alu -7 110 4 8 978 396 0 0 0 chr3 51540242 51540286 -108059497 + (TC)n Simple_repeat Simple_repeat 1 44 0 8 978 395 308 0 27 chr3 51540811 51540921 -108058862 + PB1D10 SINE Alu 1 107 -10 8 978 465 104 0 0 chr3 51541462 51541539 -108058244 + (CAGA)n Simple_repeat Simple_repeat 2 78 0 8 978 194 310 35 0 chr3 51541882 51541940 -108057843 + L2b LINE L2 3268 3327 -48 8 978 291 54 0 0 chr3 51542469 51542506 -108057277 + (TGAA)n Simple_repeat Simple_repeat 2 38 0 8 978 313 285 211 5 chr3 51542567 51542775 -108057008 + L1MEf LINE L1 1811 2061 -4139 8 978 690 122 0 0 chr3 51543877 51543984 -108055799 + (TCCC)n Simple_repeat Simple_repeat 2 108 0 9 978 474 18 0 0 chr3 51544049 51544104 -108055679 + (TG)n Simple_repeat Simple_repeat 2 56 0 9 978 227 152 0 21 chr3 51544106 51544153 -108055630 + (CA)n Simple_repeat Simple_repeat 2 47 0 9 978 344 294 11 21 chr3 51544208 51544302 -108055481 - RSINE1 SINE B4 -63 102 10 9 978 462 270 121 59 chr3 51544355 51544611 -108055172 + B4 SINE B4 3 274 -18 9 978 353 151 12 0 chr3 51544620 51544706 -108055077 + CT-rich Low_complexity Low_complexity 1 87 0 9 978 264 200 0 0 chr3 51544715 51544780 -108055003 + (CA)n Simple_repeat Simple_repeat 1 65 0 9 978 376 280 102 102 chr3 51545810 51546199 -108053584 + MTD LTR MaLR 1 374 -45 9 978 1342 210 148 6 chr3 51546533 51547003 -108052780 + Lx9 LINE L1 7098 7634 -10 9 978 765 235 231 42 chr3 51547255 51547566 -108052217 + ORR1D2 LTR MaLR 1 370 0 9 978 570 305 20 35 chr3 51548756 51548953 -108050830 + B3A SINE B2 2 195 -3 1 978 252 241 19 0 chr3 51548992 51549046 -108050737 - Charlie5 DNA MER1_type -2562 62 8 1 978 195 69 0 0 chr3 51549643 51549672 -108050111 + (T)n Simple_repeat Simple_repeat 1 29 0 1 978 392 226 8 102 chr3 51549673 51549750 -108050033 - PB1D10 SINE Alu -1 116 42 1 978 4621 42 17 47 chr3 51549750 51550352 -108049431 - L1Md_F2 LINE L1 -1 6581 5998 1 978 392 226 8 102 chr3 51550352 51550392 -108049391 - PB1D10 SINE Alu -76 41 10 1 978 505 337 93 44 chr3 51551231 51551575 -108048208 + ORR1D2 LTR MaLR 10 370 0 1 978 355 275 0 0 chr3 51551953 51552033 -108047750 + ID4 SINE ID 3 82 -1 1 978 241 208 38 0 chr3 51552035 51552088 -108047695 + GA-rich Low_complexity Low_complexity 4 58 0 1 978 328 279 111 56 chr3 51552090 51552234 -108047549 + MLT1A1 LTR MaLR 257 408 0 1 978 216 0 0 0 chr3 51552844 51552868 -108046915 + (A)n Simple_repeat Simple_repeat 1 24 0 1 978 234 91 0 0 chr3 51554251 51554284 -108045499 + (TC)n Simple_repeat Simple_repeat 2 34 0 1 978 275 215 0 15 chr3 51554334 51554400 -108045383 + (TG)n Simple_repeat Simple_repeat 2 66 0 1 978 201 198 41 20 chr3 51554563 51554661 -108045122 + (TG)n Simple_repeat Simple_repeat 2 101 0 1 978 1133 83 0 14 chr3 51554839 51554985 -108044798 + B1_Mus2 SINE Alu 2 145 -2 1 978 760 275 39 31 chr3 51555894 51556123 -108043660 + MLT1B LTR MaLR 136 366 -24 1 978 1713 31 0 0 chr3 51556424 51556617 -108043166 - B2_Mm1t SINE B2 0 193 1 1 978 277 300 23 77 chr3 51556965 51557095 -108042688 + ID_B1 SINE B4 96 218 -6 1 978 465 254 25 34 chr3 51556980 51557098 -108042685 + B1F SINE Alu 30 146 -3 1 978 301 335 98 16 chr3 51557700 51557894 -108041889 - CR1_Mam LINE CR1 -392 1812 1603 1 978 369 288 163 72 chr3 51558372 51558623 -108041160 - B4 SINE B4 -14 278 5 1 978 276 30 0 0 chr3 51558633 51558666 -108041117 + (TC)n Simple_repeat Simple_repeat 2 34 0 1 978 1133 71 0 0 chr3 51558668 51558808 -108040975 - B1_Mus2 SINE Alu -6 141 2 1 978 270 208 41 10 chr3 51558849 51558946 -108040837 + (TA)n Simple_repeat Simple_repeat 1 100 0 1 978 360 342 136 56 chr3 51559181 51559519 -108040264 + MLT1J LTR MaLR 101 465 -47 1 978 387 0 0 0 chr3 51560044 51560087 -108039696 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 978 189 0 0 0 chr3 51560091 51560112 -108039671 + (GA)n Simple_repeat Simple_repeat 1 21 0 1 978 504 0 0 0 chr3 51560710 51560766 -108039017 + (GGA)n Simple_repeat Simple_repeat 2 57 0 1 978 1061 292 59 7 chr3 51561068 51561506 -108038277 - L1MB4 LINE L1 0 6180 5720 1 978 518 295 10 45 chr3 51561664 51561863 -108037920 + B3A SINE B2 5 196 -2 1 978 256 185 37 0 chr3 51562165 51562219 -108037564 + ID4_ SINE ID 18 73 -10 1 978 475 163 42 46 chr3 51563044 51563161 -108036622 + PB1D10 SINE Alu 22 137 -12 1 978 190 195 0 24 chr3 51563317 51563359 -108036424 - MIRc SINE MIR -148 120 80 1 978 315 0 0 0 chr3 51563809 51563844 -108035939 + (CA)n Simple_repeat Simple_repeat 2 36 0 1 978 838 281 14 60 chr3 51564026 51564242 -108035541 - B4 SINE B4 -85 207 2 1 978 414 0 0 0 chr3 51565984 51566030 -108033753 + (CA)n Simple_repeat Simple_repeat 1 46 0 1 978 207 0 0 0 chr3 51566030 51566052 -108033731 + (GA)n Simple_repeat Simple_repeat 2 24 0 1 978 396 0 0 0 chr3 51566117 51566161 -108033622 + (TG)n Simple_repeat Simple_repeat 1 44 0 1 978 207 0 0 0 chr3 51566424 51566447 -108033336 + (T)n Simple_repeat Simple_repeat 1 23 0 1 978 588 227 168 0 chr3 51567161 51567346 -108032437 + ID_B1 SINE B4 2 217 -7 1 978 222 303 47 63 chr3 51567564 51567733 -108032050 + MIRb SINE MIR 22 188 -80 1 978 523 241 18 0 chr3 51567816 51567928 -108031855 - PB1D9 SINE Alu -5 115 2 1 978 235 238 152 24 chr3 51568169 51568294 -108031489 + L1MC4a LINE L1 7508 7648 -234 1 978 228 346 0 24 chr3 51568985 51569068 -108030715 + ID4 SINE ID 1 81 -2 1 978 215 354 12 60 chr3 51569667 51569751 -108030032 - ID2 SINE ID -2 81 2 1 978 250 248 133 5 chr3 51569806 51569881 -108029902 - B4 SINE B4 0 292 232 1 978 198 118 0 0 chr3 51569881 51569915 -108029868 + (TG)n Simple_repeat Simple_repeat 1 34 0 1 978 207 0 0 0 chr3 51569963 51569986 -108029797 + (TG)n Simple_repeat Simple_repeat 1 23 0 1 978 297 0 0 0 chr3 51570017 51570050 -108029733 + (TG)n Simple_repeat Simple_repeat 1 33 0 1 978 243 0 0 0 chr3 51570081 51570108 -108029675 + (TG)n Simple_repeat Simple_repeat 1 27 0 1 978 243 0 0 0 chr3 51570139 51570166 -108029617 + (TG)n Simple_repeat Simple_repeat 1 27 0 1 978 225 0 0 0 chr3 51570197 51570222 -108029561 + (TG)n Simple_repeat Simple_repeat 1 25 0 1 978 261 0 0 0 chr3 51570253 51570282 -108029501 + (TG)n Simple_repeat Simple_repeat 1 29 0 1 978 261 0 0 0 chr3 51570313 51570342 -108029441 + (TG)n Simple_repeat Simple_repeat 1 29 0 1 978 207 0 0 0 chr3 51570373 51570396 -108029387 + (TG)n Simple_repeat Simple_repeat 1 23 0 1 978 297 0 0 0 chr3 51570427 51570460 -108029323 + (TG)n Simple_repeat Simple_repeat 1 33 0 1 978 189 0 0 0 chr3 51570491 51570512 -108029271 + (TG)n Simple_repeat Simple_repeat 1 21 0 1 978 297 0 0 0 chr3 51570543 51570576 -108029207 + (TG)n Simple_repeat Simple_repeat 1 33 0 1 978 243 0 0 0 chr3 51570607 51570634 -108029149 + (TG)n Simple_repeat Simple_repeat 1 27 0 1 978 279 0 0 0 chr3 51570665 51570696 -108029087 + (TG)n Simple_repeat Simple_repeat 1 31 0 1 978 279 0 0 0 chr3 51570727 51570758 -108029025 + (TG)n Simple_repeat Simple_repeat 1 31 0 1 978 286 211 0 53 chr3 51572319 51572394 -108027389 + ID4_ SINE ID 3 73 -10 1 978 496 246 48 27 chr3 51572444 51572590 -108027193 + RSINE1 SINE B4 3 151 -14 1 978 294 29 0 0 chr3 51572628 51572663 -108027120 + (GA)n Simple_repeat Simple_repeat 2 36 0 1 978 277 350 48 37 chr3 51572714 51572901 -108026882 + ORR1E LTR MaLR 3 191 -168 1 978 262 291 0 23 chr3 51573025 51573113 -108026670 + ORR1E LTR MaLR 294 379 0 1 978 1878 191 16 5 chr3 51573848 51574217 -108025566 + ORR1D1 LTR MaLR 2 374 0 1 978 1325 196 18 18 chr3 51574420 51574696 -108025087 + ORR1D1 LTR MaLR 73 348 -26 1 978 336 24 0 0 chr3 51574704 51574745 -108025038 + (TCTCTG)n Simple_repeat Simple_repeat 2 42 0 1 978 340 256 35 92 chr3 51574746 51574888 -108024895 - RSINE1 SINE B4 -29 136 3 1 978 261 134 0 0 chr3 51575053 51575150 -108024633 + (CAGAGA)n Simple_repeat Simple_repeat 1 97 0 1 978 642 165 0 0 chr3 51575150 51575320 -108024463 + (CA)n Simple_repeat Simple_repeat 2 171 0 1 978 844 316 50 19 chr3 51575388 51575649 -108024134 + B4 SINE B4 11 279 -13 1 978 210 71 0 0 chr3 51575772 51575800 -108023983 + (TGGGGG)n Simple_repeat Simple_repeat 3 30 0 1 978 2293 75 55 52 chr3 51576719 51577045 -108022738 + ORR1A2 LTR MaLR 1 327 0 1 978 204 217 0 0 chr3 51577168 51577214 -108022569 + (TG)n Simple_repeat Simple_repeat 1 46 0 1 978 773 231 40 0 chr3 51577216 51577389 -108022394 - B3A SINE B2 -18 180 1 1 978 223 328 16 0 chr3 51577650 51577714 -108022069 + L3b LINE CR1 408 472 -10 1 978 187 143 40 20 chr3 51577935 51577985 -108021798 + (CATATA)n Simple_repeat Simple_repeat 4 54 0 1 978 311 200 25 62 chr3 51577988 51578068 -108021715 - L1MC4a LINE L1 -1203 6679 6603 1 978 586 169 0 0 chr3 51578761 51578850 -108020933 - B1_Mur2 SINE Alu -6 143 55 1 978 487 258 0 105 chr3 51579154 51579297 -108020486 - RSINE1 SINE B4 0 165 38 1 978 417 321 1 6 chr3 51579633 51579763 -108020020 - PB1D10 SINE Alu -22 125 1 1 978 229 286 36 0 chr3 51579839 51579923 -108019860 + BC1_Mm scRNA scRNA 21 107 -45 1 978 1312 269 23 3 chr3 51580015 51580365 -108019418 - ORR1E LTR MaLR -2 357 1 1 978 364 297 126 34 chr3 51580409 51580789 -108018994 + L1ME4a LINE L1 5624 6038 -86 1 978 180 0 0 0 chr3 51581039 51581059 -108018724 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1 978 817 252 44 0 chr3 51581079 51581285 -108018498 + ID_B1 SINE B4 1 215 -9 1 978 273 98 0 0 chr3 51582070 51582111 -108017672 + (TCCA)n Simple_repeat Simple_repeat 1 41 0 1 978 294 29 0 0 chr3 51582764 51582799 -108016984 + (TG)n Simple_repeat Simple_repeat 1 35 0 1 978 207 0 0 0 chr3 51582799 51582821 -108016962 + (GA)n Simple_repeat Simple_repeat 1 23 0 1 978 216 256 0 0 chr3 51583669 51583712 -108016071 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 978 363 293 63 59 chr3 51583712 51583933 -108015850 - RMER12 LTR ERVK -331 991 770 1 978 301 292 54 92 chr3 51583972 51584157 -108015626 + HAL1-3A_ME LINE L1 1975 2152 -706 1 978 184 342 153 0 chr3 51584468 51584579 -108015204 - MIR SINE MIR -39 223 96 1 978 316 232 29 0 chr3 51584664 51584733 -108015050 + MLT1J1 LTR MaLR 70 140 -304 1 978 2122 148 26 3 chr3 51585154 51585499 -108014284 - MTC LTR MaLR -68 353 1 1 978 286 297 35 18 chr3 51585595 51585708 -108014075 + MTEa LTR MaLR 45 159 -220 1 978 698 286 190 10 chr3 51585624 51586013 -108013770 + MT2A LTR ERVL 75 533 0 1 978 255 264 0 0 chr3 51586039 51586092 -108013691 + MER46C DNA MER2_type 275 327 -11 1 978 180 0 0 0 chr3 51586627 51586647 -108013136 + (CAA)n Simple_repeat Simple_repeat 2 21 0 1 978 26 0 0 0 chr3 51586699 51586725 -108013058 + AT_rich Low_complexity Low_complexity 1 26 0 1 978 300 111 0 0 chr3 51586877 51586922 -108012861 + (ATGGTG)n Simple_repeat Simple_repeat 6 50 0 1 978 232 195 46 15 chr3 51587046 51587183 -108012600 + (TG)n Simple_repeat Simple_repeat 1 141 0 1 978 265 289 46 76 chr3 51587225 51587255 -108012528 - B4A SINE B4 -63 161 120 1 978 228 245 36 36 chr3 51587255 51587310 -108012473 - B1F2 SINE Alu -94 55 1 1 978 265 289 46 76 chr3 51587310 51587390 -108012393 - B4A SINE B4 -63 119 2 1 978 565 292 51 0 chr3 51587390 51587517 -108012266 - B4A SINE B4 -59 233 100 1 978 545 256 25 0 chr3 51588356 51588477 -108011306 - B4A SINE B4 -168 124 1 1 978 263 341 24 0 chr3 51588502 51588514 -108011269 + B4A SINE B4 77 90 -202 1 978 379 298 0 0 chr3 51588514 51588608 -108011175 + PB1D10 SINE Alu 4 97 -20 1 978 324 332 133 4 chr3 51588697 51588975 -108010808 + HAL1 LINE L1 1140 1453 -1054 1 978 433 115 26 0 chr3 51590218 51590296 -108009487 + (TA)n Simple_repeat Simple_repeat 2 81 0 1 978 304 304 106 43 chr3 51590377 51590518 -108009265 + HAL1 LINE L1 2296 2445 -62 1 978 414 0 0 0 chr3 51591396 51591442 -108008341 + (TG)n Simple_repeat Simple_repeat 2 47 0 1 978 822 253 150 0 chr3 51591442 51591675 -108008108 - B4A SINE B4 -23 269 2 1 978 194 281 0 118 chr3 51591845 51591938 -108007845 - MIR SINE MIR -74 188 107 1 978 832 218 63 24 chr3 51591947 51592154 -108007629 + B3 SINE B2 2 216 0 1 978 183 80 0 0 chr3 51592635 51592660 -108007123 + (A)n Simple_repeat Simple_repeat 1 25 0 1 978 1043 296 52 15 chr3 51594430 51594838 -108004945 + L1MA5 LINE L1 5878 6300 0 2 978 324 336 0 27 chr3 51594847 51594957 -108004826 + ID_B1 SINE B4 70 176 -48 2 978 483 234 0 24 chr3 51594868 51594995 -108004788 + B1F1 SINE Alu 10 126 -21 2 978 638 282 95 40 chr3 51594997 51595259 -108004524 + B4A SINE B4 1 279 -13 2 978 369 0 0 0 chr3 51595259 51595300 -108004483 + (TG)n Simple_repeat Simple_repeat 1 41 0 2 978 294 73 0 0 chr3 51595337 51595378 -108004405 + (CA)n Simple_repeat Simple_repeat 2 42 0 2 978 236 354 39 8 chr3 51595412 51595540 -108004243 - MER5A DNA MER1_type -52 137 6 2 978 181 234 42 111 chr3 51597012 51597084 -108002699 - L2 LINE L2 -1874 1545 1479 2 978 411 311 80 68 chr3 51597786 51597948 -108001835 - RSINE1 SINE B4 0 165 2 2 978 530 273 18 0 chr3 51598132 51598242 -108001541 + PB1D7 SINE Alu 2 113 -7 2 978 1034 117 75 43 chr3 51598284 51598472 -108001311 - B2_Mm2 SINE B2 0 195 2 2 978 231 243 51 51 chr3 51598488 51598566 -108001217 + RMER5 LTR ERV1 431 508 -26 2 978 304 333 55 16 chr3 51598634 51598762 -108001021 - L1M5 LINE L1 -294 5830 5698 2 978 239 355 100 0 chr3 51598911 51599021 -108000762 - PB1 SINE Alu -4 123 3 2 978 286 274 27 0 chr3 51599082 51599155 -108000628 - ID4_ SINE ID -7 76 2 2 978 458 17 17 0 chr3 51600207 51600266 -107999517 + (TG)n Simple_repeat Simple_repeat 1 60 0 2 978 198 0 0 0 chr3 51600380 51600402 -107999381 + (CAGA)n Simple_repeat Simple_repeat 1 22 0 2 978 208 310 14 0 chr3 51600748 51600819 -107998964 + L2a LINE L2 3354 3425 -1 2 978 358 247 10 41 chr3 51601332 51601429 -107998354 + RSINE1 SINE B4 6 99 -66 2 978 229 89 44 0 chr3 51601429 51601474 -107998309 + (CA)n Simple_repeat Simple_repeat 2 48 0 2 978 243 88 0 0 chr3 51602165 51602199 -107997584 + (CCCCCA)n Simple_repeat Simple_repeat 3 36 0 2 978 4296 82 9 0 chr3 51604295 51604854 -107994929 + L1_Mus4 LINE L1 6063 6626 -10 2 978 279 0 0 0 chr3 51606051 51606082 -107993701 + (TC)n Simple_repeat Simple_repeat 1 31 0 2 978 297 0 0 0 chr3 51606082 51606114 -107993669 + (CA)n Simple_repeat Simple_repeat 1 33 0 2 978 270 0 0 0 chr3 51606963 51606993 -107992790 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 2 978 200 343 0 15 chr3 51607181 51607249 -107992534 + L3 LINE CR1 3954 4020 -469 2 978 420 37 0 0 chr3 51608625 51608679 -107991104 + (GA)n Simple_repeat Simple_repeat 1 54 0 2 978 404 233 21 1 chr3 51608937 51609044 -107990739 + HAL1-2a_MD LINE L1 2336 2507 -517 2 978 221 273 0 49 chr3 51609752 51609833 -107989950 + G-rich Low_complexity Low_complexity 2 78 0 2 978 333 0 0 0 chr3 51610808 51610845 -107988938 + (TG)n Simple_repeat Simple_repeat 1 37 0 2 978 677 167 0 9 chr3 51611261 51611376 -107988407 - B1_Mur1 SINE Alu 0 149 36 2 978 775 190 77 7 chr3 51611411 51611554 -107988229 - B3 SINE B2 -57 159 7 2 978 411 56 0 0 chr3 51611935 51611989 -107987794 + (TG)n Simple_repeat Simple_repeat 2 55 0 2 978 400 239 123 113 chr3 51612889 51613092 -107986691 + B4A SINE B4 46 250 -42 2 978 378 0 0 0 chr3 51613127 51613169 -107986614 + (CA)n Simple_repeat Simple_repeat 1 42 0 2 978 375 78 0 0 chr3 51614417 51614468 -107985315 + (TTTA)n Simple_repeat Simple_repeat 2 52 0 2 978 315 71 0 0 chr3 51615309 51615351 -107984432 + (CA)n Simple_repeat Simple_repeat 2 43 0 2 978 859 321 3 49 chr3 51615857 51616162 -107983621 + B4 SINE B4 2 292 0 2 978 261 292 0 0 chr3 51617338 51617475 -107982308 + (TG)n Simple_repeat Simple_repeat 2 138 0 2 978 378 202 103 35 chr3 51617613 51617700 -107982083 - B4 SINE B4 -69 223 131 2 978 351 0 0 0 chr3 51617731 51617770 -107982013 + (TG)n Simple_repeat Simple_repeat 2 40 0 2 978 231 259 93 0 chr3 51617773 51617827 -107981956 - B4 SINE B4 -219 73 15 2 978 220 236 71 18 chr3 51618477 51618533 -107981250 + PB1D10 SINE Alu 53 111 -6 2 978 595 293 33 0 chr3 51618546 51618696 -107981087 + B4A SINE B4 8 162 -130 2 978 798 216 99 55 chr3 51618730 51618931 -107980852 + B3 SINE B2 1 210 -6 2 978 429 325 81 53 chr3 51618964 51619247 -107980536 + B4A SINE B4 1 291 -1 2 978 411 248 103 125 chr3 51620360 51620641 -107979142 - B4A SINE B4 -16 276 2 2 978 217 176 0 19 chr3 51622435 51622487 -107977296 + A-rich Low_complexity Low_complexity 4 54 0 2 978 23 0 0 0 chr3 51623393 51623416 -107976367 + AT_rich Low_complexity Low_complexity 1 23 0 2 978 360 0 0 0 chr3 51624182 51624222 -107975561 + (TG)n Simple_repeat Simple_repeat 1 40 0 2 978 468 0 0 0 chr3 51624222 51624273 -107975510 + (GA)n Simple_repeat Simple_repeat 1 52 0 2 978 499 278 143 67 chr3 51624276 51624500 -107975283 - B4A SINE B4 -45 247 7 2 978 536 193 17 50 chr3 51625176 51625296 -107974487 + PB1D10 SINE Alu 1 116 -1 2 978 257 237 79 0 chr3 51625341 51625417 -107974366 + ID4_ SINE ID 2 83 0 2 978 288 276 82 0 chr3 51625943 51626041 -107973742 - ORR1E LTR MaLR -253 106 1 2 978 567 286 96 11 chr3 51626088 51626275 -107973508 - ID_B1 SINE B4 -20 204 2 2 978 327 213 0 0 chr3 51626920 51626995 -107972788 + (TG)n Simple_repeat Simple_repeat 1 75 0 2 978 625 286 96 33 chr3 51627003 51627274 -107972509 - B4A SINE B4 -1 291 4 2 978 609 302 76 36 chr3 51630971 51631222 -107968561 + B4A SINE B4 29 289 -3 2 978 663 350 85 19 chr3 51631391 51631769 -107968014 - L3 LINE CR1 -121 4368 3966 2 978 200 309 15 0 chr3 51632753 51632821 -107966962 + (CA)n Simple_repeat Simple_repeat 2 70 0 2 978 766 125 0 0 chr3 51632833 51632937 -107966846 + 5S rRNA rRNA 1 104 -17 2 978 1269 91 23 6 chr3 51632938 51633115 -107966668 + B2_Mm2 SINE B2 2 181 -14 2 978 708 234 49 63 chr3 51633294 51633517 -107966266 - ID_B1 SINE B4 0 224 5 2 978 323 327 141 0 chr3 51634078 51634234 -107965549 - MER5B DNA MER1_type 0 178 1 2 978 489 298 129 21 chr3 51636413 51636646 -107963137 + MER115 DNA Tip100 436 693 0 2 978 253 294 46 126 chr3 51637199 51637374 -107962409 + L2c LINE L2 3221 3381 -6 2 978 300 221 225 6 chr3 51637663 51637788 -107961995 - PB1D7 SINE Alu -2 145 1 2 978 497 273 8 47 chr3 51638183 51638310 -107961473 + B4 SINE B4 1 122 -170 2 978 684 258 13 19 chr3 51638337 51638495 -107961288 + B4 SINE B4 92 248 -44 2 978 418 345 118 20 chr3 51638525 51638729 -107961054 + B4A SINE B4 1 224 -68 2 978 316 205 0 124 chr3 51638832 51638921 -107960862 + B4 SINE B4 215 292 0 2 978 414 0 0 0 chr3 51639382 51639428 -107960355 + (TG)n Simple_repeat Simple_repeat 1 46 0 2 978 255 341 92 49 chr3 51639759 51639944 -107959839 + MIRb SINE MIR 23 215 -53 2 978 21 36 0 0 chr3 51640409 51640437 -107959346 + AT_rich Low_complexity Low_complexity 1 28 0 2 978 264 22 67 0 chr3 51641227 51641272 -107958511 + (TTTTG)n Simple_repeat Simple_repeat 3 50 0 2 978 207 0 0 0 chr3 51642123 51642146 -107957637 + (CAGA)n Simple_repeat Simple_repeat 4 26 0 2 979 247 279 25 12 chr3 51643155 51643235 -107956548 + ID4 SINE ID 3 83 0 2 979 449 198 50 0 chr3 51643859 51643960 -107955823 + B1_Mus2 SINE Alu 1 106 -41 2 979 186 43 0 0 chr3 51643965 51643988 -107955795 + (CCAA)n Simple_repeat Simple_repeat 1 23 0 2 979 524 116 12 0 chr3 51643994 51644080 -107955703 + (GA)n Simple_repeat Simple_repeat 2 88 0 2 979 533 279 65 45 chr3 51644252 51644520 -107955263 + MLT1F1 LTR MaLR 12 290 -265 2 979 186 312 76 83 chr3 51644865 51645022 -107954761 - MIRc SINE MIR -110 158 3 2 979 786 278 37 39 chr3 51645701 51646034 -107953749 + MER33 DNA MER1_type 4 323 -1 2 979 447 92 0 0 chr3 51647043 51647108 -107952675 + (TG)n Simple_repeat Simple_repeat 1 65 0 2 979 532 224 129 0 chr3 51647113 51647229 -107952554 - B3A SINE B2 -23 175 45 2 979 358 269 147 14 chr3 51647625 51647768 -107952015 + RSINE1 SINE B4 4 165 0 2 979 269 247 68 0 chr3 51648054 51648127 -107951656 - ID4 SINE ID 0 83 6 2 979 389 282 0 0 chr3 51648187 51648272 -107951511 - PB1D10 SINE Alu -32 85 1 2 979 911 117 27 20 chr3 51648580 51648728 -107951055 - B1_Mur4 SINE Alu -1 149 1 2 979 871 144 150 0 chr3 51648746 51648919 -107950864 + MTC LTR MaLR 11 209 -212 2 979 2119 216 68 15 chr3 51648919 51649121 -107950662 + Lx7 LINE L1 6823 7024 -672 2 979 375 23 0 0 chr3 51649121 51649165 -107950618 + (CCA)n Simple_repeat Simple_repeat 1 44 0 2 979 2119 216 68 15 chr3 51649165 51649480 -107950303 + Lx7 LINE L1 7025 7367 -329 2 979 207 143 17 51 chr3 51649487 51649546 -107950237 + T-rich Low_complexity Low_complexity 4 60 0 2 979 1303 206 51 48 chr3 51649557 51649893 -107949890 + Lx7 LINE L1 7360 7696 0 2 979 345 93 0 0 chr3 51649930 51649984 -107949799 + (GGAA)n Simple_repeat Simple_repeat 1 54 0 2 979 1127 194 33 5 chr3 51649984 51650196 -107949587 + MTC LTR MaLR 196 413 -8 2 979 934 287 38 4 chr3 51650920 51651182 -107948601 + B4A SINE B4 1 271 -21 2 979 378 0 0 0 chr3 51651198 51651240 -107948543 + (CA)n Simple_repeat Simple_repeat 2 43 0 2 979 963 212 103 32 chr3 51651268 51651521 -107948262 + ORR1D2 LTR MaLR 1 271 -103 2 979 602 291 69 144 chr3 51652366 51652803 -107946980 - MTD LTR MaLR -15 404 1 2 979 356 315 32 11 chr3 51654187 51654373 -107945410 + HAL1 LINE L1 1031 1220 -1287 2 979 755 295 93 33 chr3 51654511 51654766 -107945017 + B4A SINE B4 1 272 -20 2 979 552 30 0 0 chr3 51654766 51654832 -107944951 + (CA)n Simple_repeat Simple_repeat 2 67 0 2 979 755 295 93 33 chr3 51654832 51654846 -107944937 + B4A SINE B4 273 286 -6 2 979 922 183 33 28 chr3 51656717 51656897 -107942886 + B3 SINE B2 36 216 0 3 979 423 0 0 0 chr3 51657668 51657715 -107942068 + (TG)n Simple_repeat Simple_repeat 1 47 0 3 979 287 96 19 0 chr3 51657996 51658048 -107941735 + (TA)n Simple_repeat Simple_repeat 2 54 0 3 979 627 14 0 0 chr3 51658563 51658635 -107941148 + (TCCC)n Simple_repeat Simple_repeat 2 73 0 3 979 229 192 0 0 chr3 51659551 51659603 -107940180 + (CTG)n Simple_repeat Simple_repeat 1 52 0 3 979 441 116 0 0 chr3 51659967 51660036 -107939747 + (CTG)n Simple_repeat Simple_repeat 3 71 0 3 979 526 251 254 38 chr3 51661089 51661325 -107938458 - B4 SINE B4 -4 288 2 3 979 695 12 0 12 chr3 51661662 51661747 -107938036 + (GGAAA)n Simple_repeat Simple_repeat 1 84 0 3 979 602 302 26 7 chr3 51662061 51662341 -107937442 - Lx8 LINE L1 -1553 5920 5637 3 979 315 0 0 0 chr3 51663075 51663110 -107936673 + (CA)n Simple_repeat Simple_repeat 2 36 0 3 979 441 0 0 0 chr3 51663110 51663158 -107936625 + (GA)n Simple_repeat Simple_repeat 2 50 0 3 979 180 0 0 0 chr3 51664218 51664238 -107935545 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 3 979 1105 68 0 0 chr3 51664240 51664373 -107935410 - B1_Mus1 SINE Alu -15 133 1 3 979 2232 88 3 42 chr3 51664544 51664875 -107934908 + ORR1A2 LTR MaLR 2 319 -8 3 979 567 41 0 0 chr3 51665353 51665426 -107934357 + B1_Mus2 SINE Alu 75 147 0 3 979 207 0 0 0 chr3 51665426 51665449 -107934334 + (A)n Simple_repeat Simple_repeat 1 23 0 3 979 298 369 23 28 chr3 51665606 51665782 -107934001 + MIRb SINE MIR 93 267 -1 3 979 459 0 0 0 chr3 51666248 51666299 -107933484 + (TC)n Simple_repeat Simple_repeat 1 51 0 3 979 401 268 61 103 chr3 51666964 51667066 -107932717 + L1MA4A LINE L1 5680 5785 -518 3 979 438 314 18 71 chr3 51667066 51667234 -107932549 + RSINE1 SINE B4 3 161 -4 3 979 401 268 61 103 chr3 51667234 51667256 -107932527 + L1MA4A LINE L1 5786 5801 -502 3 979 198 71 0 0 chr3 51667256 51667284 -107932499 + (CA)n Simple_repeat Simple_repeat 1 28 0 3 979 401 266 59 45 chr3 51667284 51667449 -107932334 + L1MA4A LINE L1 5802 5964 -219 3 979 326 231 163 11 chr3 51668026 51668118 -107931665 + PB1D10 SINE Alu 12 117 0 3 979 468 179 397 36 chr3 51669158 51669314 -107930469 - B3 SINE B2 -4 212 1 3 979 22 35 0 0 chr3 51669948 51669977 -107929806 + AT_rich Low_complexity Low_complexity 1 29 0 3 979 37 23 0 0 chr3 51670417 51670461 -107929322 + AT_rich Low_complexity Low_complexity 1 44 0 3 979 404 247 30 40 chr3 51671298 51671399 -107928384 - Tigger12c DNA MER2_type -5 729 630 3 979 682 211 21 14 chr3 51671721 51671865 -107927918 - B1_Mur1 SINE Alu -2 147 3 3 979 522 236 46 23 chr3 51671876 51672006 -107927777 - ID_B1 SINE B4 -1 223 91 3 979 395 79 0 31 chr3 51672040 51672105 -107927678 + (TAA)n Simple_repeat Simple_repeat 2 64 0 3 979 207 0 0 0 chr3 51672369 51672392 -107927391 + (CAG)n Simple_repeat Simple_repeat 3 25 0 3 979 351 0 0 0 chr3 51672392 51672431 -107927352 + (GGA)n Simple_repeat Simple_repeat 3 41 0 3 979 288 0 0 0 chr3 51672556 51672588 -107927195 + (CA)n Simple_repeat Simple_repeat 1 32 0 3 979 528 339 94 31 chr3 51673544 51673800 -107925983 - B4A SINE B4 -6 286 15 3 979 186 71 0 0 chr3 51674321 51674349 -107925434 + (A)n Simple_repeat Simple_repeat 1 28 0 3 979 256 231 231 0 chr3 51674803 51674894 -107924889 + MLT1B LTR MaLR 111 222 -168 3 979 874 259 103 42 chr3 51674908 51675267 -107924516 - MLT1A1 LTR MaLR -5 403 23 3 979 490 293 35 7 chr3 51675271 51675412 -107924371 + MLT1B LTR MaLR 239 383 -7 3 979 454 291 154 83 chr3 51675696 51675962 -107923821 - MLT1B LTR MaLR -100 290 6 3 979 444 312 24 72 chr3 51676167 51676310 -107923473 + RSINE1 SINE B4 8 148 -17 3 979 225 94 0 0 chr3 51676310 51676342 -107923441 + (CA)n Simple_repeat Simple_repeat 1 32 0 3 979 444 312 24 72 chr3 51676342 51676364 -107923419 + RSINE1 SINE B4 149 165 0 3 979 226 73 24 24 chr3 51676377 51676419 -107923364 + (TAA)n Simple_repeat Simple_repeat 1 42 0 3 979 321 261 46 85 chr3 51677267 51677397 -107922386 + MIR3 SINE MIR 64 188 -20 3 979 212 349 63 92 chr3 51678035 51678125 -107921658 + B4 SINE B4 2 139 -153 3 979 246 216 19 19 chr3 51678125 51678177 -107921606 + B1F1 SINE Alu 3 54 -95 3 979 448 334 95 56 chr3 51678302 51678711 -107921072 + MamRep434 DNA TcMar 2 426 0 3 979 195 291 131 1 chr3 51679029 51679130 -107920653 + MIRc SINE MIR 50 165 -111 3 979 699 243 147 5 chr3 51679314 51679504 -107920279 + ID_B1 SINE B4 2 218 -6 3 979 248 176 78 0 chr3 51679459 51679510 -107920273 + PB1D10 SINE Alu 63 117 0 3 979 315 0 0 0 chr3 51679732 51679767 -107920016 + (A)n Simple_repeat Simple_repeat 1 35 0 3 979 670 281 54 20 chr3 51679860 51680063 -107919720 + B4 SINE B4 7 216 -76 3 979 274 247 204 10 chr3 51680307 51680405 -107919378 + PB1D9 SINE Alu 3 119 -1 3 979 587 275 86 11 chr3 51680750 51680775 -107919008 - L1MB3 LINE L1 -77 6094 6069 3 979 689 228 57 23 chr3 51680775 51680950 -107918833 - B3A SINE B2 -13 185 5 3 979 609 245 70 18 chr3 51680950 51681203 -107918580 - L1MB3 LINE L1 -103 6068 5795 3 979 300 326 0 20 chr3 51681211 51681311 -107918472 + MLT1A LTR MaLR 1 98 -276 3 979 266 293 48 19 chr3 51681388 51681492 -107918291 + MLT1A LTR MaLR 288 422 -22 3 979 684 252 57 9 chr3 51681503 51681730 -107918053 - L1MB3 LINE L1 -402 5781 5544 3 979 460 283 120 91 chr3 51682002 51682453 -107917330 + MLT1C LTR MaLR 4 467 0 3 979 293 47 0 23 chr3 51683528 51683572 -107916211 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 3 979 182 386 11 11 chr3 51683871 51683960 -107915823 - L2b LINE L2 0 3375 3287 3 979 249 197 0 0 chr3 51684098 51684159 -107915624 + GA-rich Low_complexity Low_complexity 1 61 0 3 979 276 103 34 17 chr3 51685577 51685636 -107914147 + G-rich Low_complexity Low_complexity 1 60 0 3 979 764 80 9 0 chr3 51685642 51685755 -107914028 + (GA)n Simple_repeat Simple_repeat 1 114 0 3 979 255 323 46 48 chr3 51685779 51685937 -107913846 - MIRb SINE MIR -90 178 6 3 979 345 47 0 0 chr3 51686508 51686551 -107913232 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 979 977 257 60 15 chr3 51686552 51686817 -107912966 - B4 SINE B4 -13 279 3 3 979 257 259 118 25 chr3 51686817 51686936 -107912847 + ORR1E LTR MaLR 4 133 -226 3 979 180 280 78 26 chr3 51687330 51687407 -107912376 + L3 LINE CR1 3605 3685 -804 3 979 242 263 13 38 chr3 51687548 51687627 -107912156 + Charlie24 DNA MER1_type 2371 2447 -3 3 979 510 320 65 51 chr3 51687889 51688225 -107911558 + L3 LINE CR1 4112 4452 -37 3 979 772 122 8 8 chr3 51688552 51688676 -107911107 + B1F2 SINE Alu 25 148 -1 3 979 187 118 0 73 chr3 51688681 51688736 -107911047 + A-rich Low_complexity Low_complexity 4 54 0 3 979 370 376 71 0 chr3 51689506 51689703 -107910080 + L3b LINE CR1 269 479 -3 3 979 552 286 46 96 chr3 51690551 51690748 -107909035 + B3A SINE B2 12 198 0 3 979 296 175 0 16 chr3 51691012 51691076 -107908707 + CT-rich Low_complexity Low_complexity 1 63 0 3 979 1433 180 103 42 chr3 51691078 51691408 -107908375 + MTD LTR MaLR 18 367 -52 3 979 420 254 146 0 chr3 51691446 51691556 -107908227 + ID_B1 SINE B4 17 142 -82 3 979 291 238 238 0 chr3 51691519 51691620 -107908163 + B1F SINE Alu 24 148 -1 3 979 318 50 0 0 chr3 51694562 51694602 -107905181 + (CA)n Simple_repeat Simple_repeat 1 40 0 3 979 650 188 124 8 chr3 51694656 51694785 -107904998 - B1_Mur4 SINE Alu -1 149 6 3 979 2991 165 48 52 chr3 51694802 51695454 -107904329 - Lx9 LINE L1 -2 7642 6994 3 979 1060 271 117 9 chr3 51695466 51695808 -107903975 + MTEa LTR MaLR 1 379 0 3 979 838 272 41 33 chr3 51696295 51696565 -107903218 + B4A SINE B4 3 274 -18 3 979 4550 74 3 2 chr3 51696941 51697524 -107902259 + MT2B2 LTR ERVL 1 584 0 3 979 637 287 218 40 chr3 51698131 51698803 -107900980 - L1MC4a LINE L1 -26 7856 7064 3 979 320 254 54 0 chr3 51698952 51699044 -107900739 - B1F2 SINE Alu -11 106 9 3 979 814 258 62 5 chr3 51699554 51699749 -107900034 + ID_B1 SINE B4 2 207 -17 3 979 201 39 0 0 chr3 51699755 51699781 -107900002 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 3 979 698 86 19 28 chr3 51700797 51700905 -107898878 - B1_Mur3 SINE Alu -1 148 42 3 979 393 308 71 58 chr3 51700953 51701108 -107898675 - RSINE1 SINE B4 0 165 9 3 979 364 222 0 14 chr3 51701139 51701212 -107898571 - B1F2 SINE Alu -77 72 1 3 979 625 289 14 0 chr3 51701212 51701294 -107898489 - B4A SINE B4 -207 85 2 3 979 1654 31 5 0 chr3 51701482 51701674 -107898109 + B2_Mm1t SINE B2 1 193 0 3 979 234 0 0 0 chr3 51702057 51702083 -107897700 + (TG)n Simple_repeat Simple_repeat 1 26 0 3 979 600 83 0 0 chr3 51702083 51702179 -107897604 + (GA)n Simple_repeat Simple_repeat 2 97 0 3 979 412 292 57 0 chr3 51702197 51702303 -107897480 - RSINE1 SINE B4 -51 114 3 3 979 184 130 43 0 chr3 51702419 51702465 -107897318 + (CA)n Simple_repeat Simple_repeat 2 49 0 3 979 502 308 76 59 chr3 51702466 51702704 -107897079 - MamRep434 DNA TcMar -8 418 177 3 979 1476 206 129 0 chr3 51703061 51703386 -107896397 - ORR1D1 LTR MaLR -7 367 1 3 979 278 106 21 0 chr3 51703632 51703679 -107896104 + (AGGGGG)n Simple_repeat Simple_repeat 6 53 0 3 979 396 0 0 0 chr3 51704396 51704440 -107895343 + (TG)n Simple_repeat Simple_repeat 2 45 0 3 979 315 85 0 0 chr3 51704641 51704688 -107895095 + (TG)n Simple_repeat Simple_repeat 2 48 0 3 979 25 0 0 0 chr3 51705884 51705909 -107893874 + AT_rich Low_complexity Low_complexity 1 25 0 3 979 890 201 16 5 chr3 51705929 51706114 -107893669 - L1MA9 LINE L1 -5 6307 6121 3 979 504 271 55 7 chr3 51706114 51706259 -107893524 + B3A SINE B2 5 156 -42 3 979 465 62 0 0 chr3 51706261 51706326 -107893457 + (CA)n Simple_repeat Simple_repeat 2 66 0 4 979 345 102 0 0 chr3 51706337 51706396 -107893387 + (CAGAGA)n Simple_repeat Simple_repeat 2 60 0 4 979 1116 257 29 7 chr3 51706430 51706739 -107893044 - L1MA9 LINE L1 -176 6136 5821 3 979 399 92 0 0 chr3 51706754 51706819 -107892964 + (TCTG)n Simple_repeat Simple_repeat 4 68 0 4 979 625 171 11 0 chr3 51706854 51707029 -107892754 + (TG)n Simple_repeat Simple_repeat 2 178 0 4 979 607 179 0 11 chr3 51707066 51707247 -107892536 + (TG)n Simple_repeat Simple_repeat 2 180 0 4 979 303 135 0 71 chr3 51707274 51707330 -107892453 - HAL1-3A_ME LINE L1 -831 2027 1976 4 979 538 309 53 10 chr3 51707340 51707549 -107892234 - L1MA9 LINE L1 -536 5755 5538 3 979 261 0 0 0 chr3 51707779 51707808 -107891975 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 4 979 294 283 121 32 chr3 51709380 51709504 -107890279 + RMER15 LTR ERVL 441 575 0 4 979 283 246 43 14 chr3 51709540 51709610 -107890173 - RSINE1 SINE B4 -91 74 3 4 979 448 273 30 0 chr3 51710395 51710494 -107889289 + PB1D10 SINE Alu 16 117 0 4 979 189 0 0 0 chr3 51711242 51711263 -107888520 + (TG)n Simple_repeat Simple_repeat 1 21 0 4 979 950 207 40 9 chr3 51712691 51712894 -107886889 - B3 SINE B2 -4 191 4 4 979 1718 173 56 48 chr3 51712968 51713362 -107886421 + RMER10B LTR ERVL 2 398 0 4 979 260 219 44 47 chr3 51713581 51713687 -107886096 - B4 SINE B4 -48 244 143 4 979 1097 58 7 0 chr3 51714614 51714751 -107885032 + B1_Mus2 SINE Alu 1 138 -9 4 979 200 59 29 0 chr3 51714751 51714785 -107884998 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 4 979 333 47 0 0 chr3 51715133 51715176 -107884607 + (TG)n Simple_repeat Simple_repeat 1 43 0 4 979 549 263 154 61 chr3 51715203 51715450 -107884333 - B4A SINE B4 -21 271 2 4 979 948 132 0 0 chr3 51715491 51715643 -107884140 + (TA)n Simple_repeat Simple_repeat 2 153 0 4 979 238 250 0 0 chr3 51715907 51715951 -107883832 + (CACG)n Simple_repeat Simple_repeat 4 47 0 4 979 222 331 137 24 chr3 51717405 51717529 -107882254 - MIR SINE MIR -82 180 43 4 979 299 368 26 0 chr3 51718065 51718179 -107881604 + PB1D10 SINE Alu 1 117 0 4 979 301 298 24 0 chr3 51718377 51718461 -107881322 - Charlie12 DNA MER1_type -2783 90 5 4 979 557 310 35 110 chr3 51718459 51718713 -107881070 + MLT2D LTR ERVL 129 363 -51 4 979 977 208 39 0 chr3 51718829 51719036 -107880747 - B3 SINE B2 -1 215 1 4 979 342 0 0 0 chr3 51720705 51720743 -107879040 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 4 979 243 0 0 0 chr3 51720803 51720830 -107878953 + (TAGA)n Simple_repeat Simple_repeat 2 28 0 4 979 287 295 113 9 chr3 51720859 51720965 -107878818 + B4 SINE B4 164 280 -12 4 979 478 332 56 26 chr3 51721912 51722178 -107877605 - B4 SINE B4 -18 274 1 4 979 458 259 80 20 chr3 51722552 51722702 -107877081 + RSINE1 SINE B4 5 163 -2 4 979 288 141 118 59 chr3 51723486 51723554 -107876229 + MTEb LTR MaLR 294 365 -14 4 979 263 215 21 151 chr3 51723635 51723728 -107876055 - L2a LINE L2 -64 3362 3282 4 979 1807 206 16 19 chr3 51723801 51724167 -107875616 - ORR1D1 LTR MaLR -9 365 1 4 979 384 294 188 30 chr3 51724201 51724782 -107875001 - L2a LINE L2 -272 3154 2471 4 979 814 184 43 0 chr3 51725208 51725349 -107874434 - B1_Mur2 SINE Alu -1 148 2 4 979 199 336 16 47 chr3 51725963 51726091 -107873692 + MIRc SINE MIR 57 180 -88 4 979 315 272 103 2 chr3 51726847 51726966 -107872817 - MIR SINE MIR -56 152 24 4 979 306 206 52 52 chr3 51727345 51727422 -107872361 + B4 SINE B4 216 292 0 4 979 850 286 18 75 chr3 51730198 51730425 -107869358 + ID_B1 SINE B4 2 215 -9 4 979 356 191 11 0 chr3 51730441 51730530 -107869253 + GA-rich Low_complexity Low_complexity 4 93 0 4 979 286 233 16 41 chr3 51732477 51732576 -107867207 + L1MC3 LINE L1 7700 7770 -15 4 979 332 146 0 18 chr3 51732590 51732646 -107867137 + tRNA-Ala-GCA tRNA tRNA 1 55 -20 4 979 324 0 0 0 chr3 51732657 51732693 -107867090 + (TG)n Simple_repeat Simple_repeat 2 37 0 4 979 905 93 8 8 chr3 51732723 51732853 -107866930 - B1_Mus2 SINE Alu -17 130 1 4 979 2399 79 31 12 chr3 51733388 51733709 -107866074 - ORR1A2 LTR MaLR 0 327 1 4 979 2228 109 18 6 chr3 51734026 51734357 -107865426 + IAPLTR1a_Mm LTR ERVK 1 335 -2 4 979 11383 98 91 27 chr3 51734382 51736975 -107862808 + IAPEz-int LTR ERVK 17 2774 -3707 4 979 3148 20 0 0 chr3 51736973 51737330 -107862453 + IAPEz-int LTR ERVK 4001 4357 -2124 4 979 5696 71 33 12 chr3 51737321 51738076 -107861707 + IAPEz-int LTR ERVK 5709 6479 -2 4 979 2228 109 18 6 chr3 51738078 51738409 -107861374 + IAPLTR1a_Mm LTR ERVK 1 335 -2 4 979 213 39 0 0 chr3 51738587 51738613 -107861170 + (GTTTG)n Simple_repeat Simple_repeat 5 30 0 4 979 297 0 0 0 chr3 51738614 51738647 -107861136 + (T)n Simple_repeat Simple_repeat 1 33 0 4 979 986 251 79 40 chr3 51739639 51739917 -107859866 - B4 SINE B4 0 292 4 4 979 222 37 0 0 chr3 51740459 51740486 -107859297 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 4 979 248 275 47 62 chr3 51740580 51740708 -107859075 + MT2B LTR ERVL 132 257 -344 4 979 634 175 83 0 chr3 51740633 51740753 -107859030 + B1_Mur3 SINE Alu 20 149 0 4 979 285 51 0 0 chr3 51740763 51740802 -107858981 + (CCAA)n Simple_repeat Simple_repeat 2 40 0 4 979 236 266 41 81 chr3 51741269 51741392 -107858391 + RLTR25B LTR ERVK 404 521 -507 4 979 246 326 21 32 chr3 51741306 51741401 -107858382 + ID_B1 SINE B4 120 213 -11 4 979 314 311 118 57 chr3 51741613 51741876 -107857907 - B4 SINE B4 -12 280 2 4 979 512 290 158 58 chr3 51742361 51742621 -107857162 + B4 SINE B4 2 287 -5 4 979 428 250 0 59 chr3 51742897 51743016 -107856767 + ID_B1 SINE B4 80 191 -33 4 979 405 278 0 67 chr3 51742899 51743034 -107856749 + B1_Mus2 SINE Alu 1 126 -21 4 979 318 241 12 48 chr3 51743035 51743118 -107856665 + ID4_ SINE ID 3 82 -1 4 979 315 0 0 0 chr3 51743443 51743478 -107856305 + (TG)n Simple_repeat Simple_repeat 1 35 0 4 979 294 50 0 0 chr3 51743480 51743520 -107856263 + (CAGAGA)n Simple_repeat Simple_repeat 2 41 0 4 979 195 42 0 0 chr3 51743614 51743638 -107856145 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 4 979 1945 144 31 15 chr3 51744200 51744524 -107855259 + ORR1A4 LTR MaLR 1 329 0 4 979 631 282 32 0 chr3 51744543 51744699 -107855084 - RSINE1 SINE B4 -2 163 3 4 979 234 0 0 0 chr3 51744707 51744733 -107855050 + (TTG)n Simple_repeat Simple_repeat 2 27 0 4 979 182 359 94 31 chr3 51744790 51745014 -107854769 - L2c LINE L2 -127 3260 3023 4 979 300 311 46 19 chr3 51745994 51746030 -107853753 + B4A SINE B4 46 84 -208 4 979 471 229 24 39 chr3 51746030 51746157 -107853626 + B1F SINE Alu 1 125 -24 4 979 350 333 104 55 chr3 51746298 51746587 -107853196 - Tigger12c DNA MER2_type -278 456 154 4 979 934 284 25 0 chr3 51746710 51746914 -107852869 - B4 SINE B4 0 292 84 4 979 27 29 0 0 chr3 51746934 51746968 -107852815 + AT_rich Low_complexity Low_complexity 1 34 0 4 979 440 295 0 19 chr3 51746973 51747080 -107852703 - RSINE1 SINE B4 -56 109 5 4 979 644 213 50 0 chr3 51748633 51748774 -107851009 + B1_Mus1 SINE Alu 1 148 0 4 979 200 189 0 0 chr3 51748786 51748823 -107850960 + A-rich Low_complexity Low_complexity 4 40 0 4 979 317 233 33 0 chr3 51749021 51749081 -107850702 + MIR3 SINE MIR 120 181 -27 4 979 198 208 0 0 chr3 51749107 51749160 -107850623 + (CATG)n Simple_repeat Simple_repeat 2 54 0 4 979 419 284 74 148 chr3 51749189 51749487 -107850296 - B4 SINE B4 -16 276 1 4 979 183 336 94 44 chr3 51749846 51750005 -107849778 + L2 LINE L2 2800 2966 -453 4 979 273 274 27 27 chr3 51750083 51750158 -107849625 - ID4 SINE ID 0 83 9 4 979 21 0 0 0 chr3 51750223 51750244 -107849539 + AT_rich Low_complexity Low_complexity 1 21 0 4 979 858 244 83 36 chr3 51750378 51750654 -107849129 + MLT1A0 LTR MaLR 76 364 -1 4 979 224 325 181 18 chr3 51750923 51751089 -107848694 - MIR3 SINE MIR 0 208 16 4 979 223 323 61 38 chr3 51751861 51751993 -107847790 - MIRb SINE MIR -9 259 125 4 979 876 203 99 28 chr3 51752222 51752404 -107847379 - B3 SINE B2 -16 200 6 4 979 937 256 81 90 chr3 51752411 51752778 -107847005 + MTE2a LTR MaLR 47 419 0 4 979 858 238 180 16 chr3 51752862 51753178 -107846605 - L1MC3 LINE L1 -106 7679 7312 4 979 1126 66 0 0 chr3 51753215 51753351 -107846432 - B1_Mm SINE Alu -10 137 2 4 979 291 85 0 0 chr3 51753370 51753417 -107846366 + (TG)n Simple_repeat Simple_repeat 1 47 0 4 979 389 276 328 15 chr3 51753455 51753657 -107846126 - B4A SINE B4 -4 288 24 4 979 1385 263 103 4 chr3 51753739 51754095 -107845688 - L1MC3 LINE L1 -536 7249 6850 4 979 336 102 0 0 chr3 51754095 51754144 -107845639 + (TG)n Simple_repeat Simple_repeat 2 50 0 4 979 1385 263 103 4 chr3 51754144 51754241 -107845542 - L1MC3 LINE L1 -936 6849 6752 4 979 310 280 175 0 chr3 51754281 51754424 -107845359 - L1MC3 LINE L1 -1107 6678 6511 4 979 222 208 0 0 chr3 51754448 51754501 -107845282 + (CAT)n Simple_repeat Simple_repeat 2 54 0 4 979 595 273 53 0 chr3 51754529 51754679 -107845104 - B3A SINE B2 -38 160 3 4 979 350 304 80 20 chr3 51754705 51754856 -107844927 - L1MC3 LINE L1 -1314 6471 6312 4 979 717 278 68 48 chr3 51755031 51755383 -107844400 - L1MC3 LINE L1 -1506 6279 5921 4 979 206 282 82 0 chr3 51755436 51755521 -107844262 - L2 LINE L2 -1322 2097 2006 4 979 321 284 86 118 chr3 51755619 51755722 -107844061 - Tigger7 DNA MER2_type -38 2453 2369 4 979 761 130 87 31 chr3 51755722 51755849 -107843934 + B1_Mur3 SINE Alu 1 134 -15 4 979 294 73 0 0 chr3 51755850 51755891 -107843892 + (CAAT)n Simple_repeat Simple_repeat 4 44 0 4 979 321 284 86 118 chr3 51755891 51756005 -107843778 - Tigger7 DNA MER2_type -123 2368 2241 4 979 349 290 81 74 chr3 51756005 51756154 -107843629 + B4A SINE B4 1 150 -142 4 979 1135 265 123 22 chr3 51756176 51756638 -107843145 + Lx8 LINE L1 6963 7471 -2 4 979 1470 212 121 11 chr3 51759190 51759561 -107840222 - MTD LTR MaLR 0 419 8 4 979 621 190 0 24 chr3 51760587 51760711 -107839072 + Lx9 LINE L1 6646 6766 -878 4 979 1061 115 0 9 chr3 51760774 51760985 -107838798 + (GAA)n Simple_repeat Simple_repeat 1 208 0 4 979 21 0 0 0 chr3 51761142 51761163 -107838620 + AT_rich Low_complexity Low_complexity 1 21 0 5 979 322 350 35 7 chr3 51761328 51761469 -107838314 - L1M4 LINE L1 -3596 2550 2406 5 979 183 80 0 0 chr3 51762306 51762331 -107837452 + (TTTTA)n Simple_repeat Simple_repeat 5 29 0 5 979 189 195 0 0 chr3 51762657 51762698 -107837085 + (TG)n Simple_repeat Simple_repeat 1 41 0 5 979 708 281 113 16 chr3 51762717 51762974 -107836809 - B4A SINE B4 -8 284 3 5 979 414 0 0 0 chr3 51763023 51763069 -107836714 + (CA)n Simple_repeat Simple_repeat 2 47 0 5 979 706 250 41 33 chr3 51764275 51764465 -107835318 + B3A SINE B2 1 182 -34 5 979 715 181 16 8 chr3 51764465 51764593 -107835190 + B1_Mur2 SINE Alu 1 129 -20 5 979 200 204 0 0 chr3 51764598 51764642 -107835141 + (CAA)n Simple_repeat Simple_repeat 2 45 0 5 979 293 296 46 9 chr3 51765102 51765211 -107834572 - PB1D7 SINE Alu -7 113 1 5 979 361 250 121 0 chr3 51765213 51765337 -107834446 - L1MA8 LINE L1 -1 6290 6152 5 979 237 178 0 0 chr3 51765337 51765382 -107834401 + (TG)n Simple_repeat Simple_repeat 2 46 0 5 979 445 307 78 8 chr3 51765406 51765534 -107834249 + RSINE1 SINE B4 1 137 -28 5 979 354 23 0 0 chr3 51765536 51765579 -107834204 + (CA)n Simple_repeat Simple_repeat 1 43 0 5 979 252 0 0 0 chr3 51765579 51765606 -107834177 + (CGGA)n Simple_repeat Simple_repeat 1 28 0 5 979 248 351 27 0 chr3 51765634 51765745 -107834038 - L1MA4 LINE L1 -309 5991 5878 5 979 913 220 44 15 chr3 51766692 51766895 -107832888 + B3 SINE B2 1 209 -7 5 979 594 0 0 0 chr3 51768028 51768094 -107831689 + (GA)n Simple_repeat Simple_repeat 1 66 0 5 979 308 140 0 0 chr3 51768394 51768444 -107831339 + (TG)n Simple_repeat Simple_repeat 1 50 0 5 979 679 162 11 11 chr3 51768448 51768623 -107831160 + (TATG)n Simple_repeat Simple_repeat 4 178 0 5 979 608 175 6 28 chr3 51768660 51768842 -107830941 + (TATG)n Simple_repeat Simple_repeat 1 178 0 5 979 396 0 0 0 chr3 51769191 51769235 -107830548 + (CA)n Simple_repeat Simple_repeat 2 45 0 5 979 186 189 0 0 chr3 51769241 51769278 -107830505 + GA-rich Low_complexity Low_complexity 1 37 0 5 979 195 372 0 0 chr3 51770537 51770615 -107829168 - MIR SINE MIR -35 227 150 5 979 291 323 113 113 chr3 51770690 51771025 -107828758 + ORR1D1 LTR MaLR 28 362 -12 5 979 462 236 93 16 chr3 51771693 51771822 -107827961 - B4A SINE B4 -145 147 9 5 979 432 0 0 0 chr3 51772898 51772946 -107826837 + (TG)n Simple_repeat Simple_repeat 2 49 0 5 979 936 252 103 33 chr3 51772953 51773224 -107826559 - B4A SINE B4 -2 290 1 5 980 673 228 24 91 chr3 51773819 51773852 -107825931 - B3A SINE B2 -3 195 167 5 980 207 0 0 0 chr3 51773852 51773875 -107825908 + (TCTG)n Simple_repeat Simple_repeat 4 26 0 5 980 673 228 24 91 chr3 51773875 51774049 -107825734 - B3A SINE B2 -32 166 2 5 980 753 210 0 0 chr3 51774744 51775018 -107824765 + (TG)n Simple_repeat Simple_repeat 1 274 0 5 980 907 281 34 41 chr3 51775018 51775311 -107824472 - B4A SINE B4 0 292 2 5 980 29 47 0 0 chr3 51775441 51775484 -107824299 + AT_rich Low_complexity Low_complexity 1 43 0 5 980 228 169 85 0 chr3 51777530 51777589 -107822194 + L1_Mur2 LINE L1 3375 3438 -2439 5 980 444 211 17 84 chr3 51778050 51778078 -107821705 - ID_B1 SINE B4 -32 192 82 5 980 710 66 0 0 chr3 51778078 51778169 -107821614 - B1_Mus2 SINE Alu -56 91 1 5 980 511 246 216 50 chr3 51778654 51778992 -107820791 + Lx8 LINE L1 7052 7445 -28 5 980 241 333 22 0 chr3 51779148 51779238 -107820545 + L1MD1 LINE L1 6026 6117 -125 5 980 234 0 0 0 chr3 51780127 51780153 -107819630 + (TG)n Simple_repeat Simple_repeat 2 27 0 5 980 385 230 127 90 chr3 51780170 51780304 -107819479 - B3A SINE B2 -59 139 1 5 980 495 0 0 0 chr3 51780835 51780890 -107818893 + (TG)n Simple_repeat Simple_repeat 2 56 0 5 980 22 0 0 0 chr3 51780928 51780950 -107818833 + AT_rich Low_complexity Low_complexity 1 22 0 5 980 3215 53 8 2 chr3 51780966 51781360 -107818423 + MTA_Mm LTR MaLR 1 396 0 5 980 22 35 0 0 chr3 51782655 51782684 -107817099 + AT_rich Low_complexity Low_complexity 1 29 0 5 980 1192 101 0 48 chr3 51783264 51783451 -107816332 + B2_Mm2 SINE B2 1 178 -17 5 980 423 0 0 0 chr3 51783485 51783532 -107816251 + (TA)n Simple_repeat Simple_repeat 2 48 0 5 980 812 280 96 26 chr3 51783537 51783808 -107815975 + B4A SINE B4 3 292 0 5 980 21 36 0 0 chr3 51784670 51784698 -107815085 + AT_rich Low_complexity Low_complexity 1 28 0 5 980 201 250 21 0 chr3 51785006 51785054 -107814729 - MIRc SINE MIR -135 133 85 5 980 722 11 11 0 chr3 51785252 51785339 -107814444 + (TC)n Simple_repeat Simple_repeat 2 89 0 5 980 207 0 0 0 chr3 51785339 51785361 -107814422 + (TG)n Simple_repeat Simple_repeat 2 24 0 5 980 764 120 56 0 chr3 51785374 51785499 -107814284 - B2_Mm2 SINE B2 -3 192 61 5 980 569 295 34 11 chr3 51785920 51786095 -107813688 - B3A SINE B2 -19 179 1 5 980 844 233 5 54 chr3 51787208 51787430 -107812353 + B3 SINE B2 4 214 -2 5 980 966 157 0 0 chr3 51787768 51787915 -107811868 + B1_Mus2 SINE Alu 1 147 0 5 980 264 127 0 0 chr3 51787916 51787971 -107811812 + (A)n Simple_repeat Simple_repeat 1 55 0 5 980 577 112 24 44 chr3 51788056 51788317 -107811466 + (CA)n Simple_repeat Simple_repeat 1 255 0 5 980 220 229 21 0 chr3 51789904 51789952 -107809831 + CT-rich Low_complexity Low_complexity 2 50 0 5 980 788 137 0 7 chr3 51790269 51790409 -107809374 + (TC)n Simple_repeat Simple_repeat 2 140 0 5 980 670 135 56 70 chr3 51793556 51793699 -107806084 + B1_Mur2 SINE Alu 2 142 -7 5 980 261 0 0 0 chr3 51793700 51793729 -107806054 + (TAAA)n Simple_repeat Simple_repeat 1 29 0 5 980 271 58 37 37 chr3 51793980 51794034 -107805749 + (CAAAAA)n Simple_repeat Simple_repeat 1 54 0 5 980 978 219 259 6 chr3 51794170 51794226 -107805557 - MTD LTR MaLR 0 419 352 5 980 288 0 0 0 chr3 51794226 51794258 -107805525 + (TG)n Simple_repeat Simple_repeat 2 33 0 5 980 978 219 259 6 chr3 51794258 51794522 -107805261 - MTD LTR MaLR -68 351 18 5 980 596 131 0 18 chr3 51794617 51794708 -107805075 + (TCTCCC)n Simple_repeat Simple_repeat 6 94 0 5 980 231 36 0 0 chr3 51794708 51794736 -107805047 + (CA)n Simple_repeat Simple_repeat 1 28 0 5 980 596 131 0 18 chr3 51794736 51794753 -107805030 + (TCTCCC)n Simple_repeat Simple_repeat 1 17 0 5 980 192 77 0 0 chr3 51794784 51794810 -107804973 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 5 980 488 233 10 13 chr3 51795358 51795473 -107804310 + RSINE1 SINE B4 1 112 -180 5 980 580 241 101 67 chr3 51795964 51796231 -107803552 + B4 SINE B4 3 278 -14 5 980 268 83 20 20 chr3 51796262 51796311 -107803472 + (GGGA)n Simple_repeat Simple_repeat 1 49 0 5 980 288 243 143 80 chr3 51796383 51796495 -107803288 + MT2B LTR ERVL 146 264 -337 5 980 531 200 26 26 chr3 51796419 51796532 -107803251 + B1_Mus1 SINE Alu 35 147 -1 5 980 270 0 0 0 chr3 51797494 51797524 -107802259 + (CA)n Simple_repeat Simple_repeat 2 31 0 5 980 380 252 98 38 chr3 51798230 51798362 -107801421 - B1F SINE Alu -8 141 2 5 980 238 152 34 0 chr3 51798670 51798729 -107801054 + (TTA)n Simple_repeat Simple_repeat 1 61 0 5 980 21 0 0 0 chr3 51798744 51798765 -107801018 + AT_rich Low_complexity Low_complexity 1 21 0 5 980 693 209 174 0 chr3 51798783 51798955 -107800828 - ID_B1 SINE B4 -19 205 4 5 980 182 219 0 0 chr3 51800082 51800114 -107799669 - MIR SINE MIR -95 113 82 5 980 235 198 309 0 chr3 51800167 51800248 -107799535 + PB1D10 SINE Alu 3 108 -9 5 980 1069 244 67 57 chr3 51800261 51800544 -107799239 + B4A SINE B4 3 288 -4 5 980 297 288 0 0 chr3 51800611 51800684 -107799099 + ID2 SINE ID 9 81 -2 5 980 528 16 0 0 chr3 51800701 51800762 -107799021 + (GGAA)n Simple_repeat Simple_repeat 3 63 0 5 980 269 274 193 0 chr3 51800976 51801078 -107798705 + MIR SINE MIR 70 193 -75 5 980 259 303 20 126 chr3 51802196 51802347 -107797436 + RLTR25A LTR ERVK 442 576 -527 5 980 599 118 12 0 chr3 51802294 51802379 -107797404 + B1_Mus2 SINE Alu 50 135 -12 5 980 203 281 31 0 chr3 51803651 51803715 -107796068 - MIR SINE MIR -190 72 7 5 980 1639 47 0 0 chr3 51803821 51804014 -107795769 + B2_Mm1a SINE B2 1 193 0 5 980 201 74 0 0 chr3 51805308 51805335 -107794448 + (A)n Simple_repeat Simple_repeat 1 27 0 5 980 294 98 0 0 chr3 51806147 51806198 -107793585 + (CAGA)n Simple_repeat Simple_repeat 4 54 0 5 980 824 286 23 84 chr3 51806240 51806549 -107793234 + B4 SINE B4 3 292 0 5 980 1145 205 27 5 chr3 51807477 51807697 -107792086 - URR1B DNA MER1_type 0 225 1 5 980 371 302 31 31 chr3 51808614 51808744 -107791039 - B1F SINE Alu -2 147 18 5 980 545 257 53 0 chr3 51808845 51808958 -107790825 - B1_Mur1 SINE Alu -24 125 7 5 980 716 295 63 0 chr3 51808988 51809178 -107790605 - B3 SINE B2 0 216 15 5 980 594 0 0 0 chr3 51810121 51810187 -107789596 + (TTCC)n Simple_repeat Simple_repeat 4 69 0 5 980 690 13 0 0 chr3 51811311 51811390 -107788393 + (GA)n Simple_repeat Simple_repeat 1 79 0 5 980 252 184 0 0 chr3 51812192 51812241 -107787542 + T-rich Low_complexity Low_complexity 1 49 0 5 980 199 0 0 61 chr3 51812347 51812380 -107787403 + (TG)n Simple_repeat Simple_repeat 1 31 0 5 980 578 89 33 54 chr3 51812415 51812788 -107786995 + (TG)n Simple_repeat Simple_repeat 1 364 0 5 980 600 88 39 45 chr3 51812811 51812990 -107786793 + (TG)n Simple_repeat Simple_repeat 2 179 0 5 980 207 0 0 0 chr3 51814118 51814141 -107785642 + (CCA)n Simple_repeat Simple_repeat 3 25 0 5 980 304 93 53 13 chr3 51814138 51814214 -107785569 + (CA)n Simple_repeat Simple_repeat 1 79 0 5 980 315 232 21 21 chr3 51814264 51814361 -107785422 + (CA)n Simple_repeat Simple_repeat 1 97 0 5 980 264 200 0 0 chr3 51816016 51816071 -107783712 + (TA)n Simple_repeat Simple_repeat 1 55 0 5 980 366 23 0 0 chr3 51816071 51816114 -107783669 + (TG)n Simple_repeat Simple_repeat 2 44 0 6 980 1010 205 39 5 chr3 51816157 51816363 -107783420 - B3 SINE B2 -3 213 1 6 980 697 279 101 5 chr3 51816365 51816574 -107783209 - B4A SINE B4 -63 229 1 6 980 488 273 0 35 chr3 51816668 51816812 -107782971 - MER58D DNA MER1_type -11 375 237 6 980 1716 292 122 51 chr3 51817024 51817633 -107782150 - L1M2 LINE L1 -1358 4785 4163 6 980 471 18 0 0 chr3 51817633 51817689 -107782094 + (TC)n Simple_repeat Simple_repeat 1 56 0 6 980 1716 292 122 51 chr3 51817689 51817818 -107781965 - L1M2 LINE L1 -1981 4162 4013 6 980 414 0 0 0 chr3 51817818 51817864 -107781919 + (TG)n Simple_repeat Simple_repeat 2 47 0 6 980 1716 292 122 51 chr3 51817864 51818158 -107781625 - L1M2 LINE L1 -2131 4012 3682 6 980 289 279 25 0 chr3 51818144 51818223 -107781560 + Lx7 LINE L1 5668 5748 -1948 6 980 1282 160 8 43 chr3 51818227 51818481 -107781302 + RMER1B Other Other 815 1059 -7 6 980 368 274 39 12 chr3 51818479 51818651 -107781132 + Lx9 LINE L1 5741 5917 -1556 6 980 761 152 52 22 chr3 51818864 51818999 -107780784 + B1_Mus1 SINE Alu 4 142 -6 6 980 586 336 27 62 chr3 51819496 51819756 -107780027 + L3 LINE CR1 4236 4486 -3 6 980 219 36 0 0 chr3 51819980 51820008 -107779775 + (GTTTG)n Simple_repeat Simple_repeat 3 30 0 6 980 315 0 0 0 chr3 51820068 51820103 -107779680 + (TATG)n Simple_repeat Simple_repeat 2 36 0 6 980 234 0 0 0 chr3 51821224 51821250 -107778533 + (TTG)n Simple_repeat Simple_repeat 2 27 0 6 980 219 164 55 0 chr3 51821676 51821731 -107778052 + (TTG)n Simple_repeat Simple_repeat 2 59 0 6 980 659 242 140 7 chr3 51822329 51822600 -107777183 + L1MA5 LINE L1 5986 6292 -8 6 980 754 231 12 24 chr3 51822879 51823043 -107776740 + RSINE1 SINE B4 2 163 -2 6 980 21 57 0 0 chr3 51823069 51823104 -107776679 + AT_rich Low_complexity Low_complexity 1 35 0 6 980 717 144 0 0 chr3 51823483 51823615 -107776168 + (TAGA)n Simple_repeat Simple_repeat 1 132 0 6 980 229 340 60 0 chr3 51823986 51824086 -107775697 + ORR1E LTR MaLR 1 106 -253 6 980 348 127 0 0 chr3 51824140 51824195 -107775588 + (TCC)n Simple_repeat Simple_repeat 2 56 0 6 980 237 322 93 25 chr3 51825703 51825821 -107773962 - Tigger15a DNA TcMar -55 660 535 6 980 434 295 0 26 chr3 51827420 51827535 -107772248 + ID_B1 SINE B4 113 224 0 6 980 218 184 107 33 chr3 51827907 51827972 -107771811 + B4 SINE B4 13 82 -210 6 980 289 236 0 19 chr3 51827988 51828096 -107771687 + (CA)n Simple_repeat Simple_repeat 1 106 0 6 980 721 241 13 102 chr3 51828553 51828789 -107770994 + ID_B1 SINE B4 1 215 -9 6 980 343 265 76 62 chr3 51829872 51830017 -107769766 + HAL1-3A_ME LINE L1 2291 2437 -421 6 980 1172 173 29 55 chr3 51830288 51830469 -107769314 + ORR1A2 LTR MaLR 62 236 -91 6 980 442 66 81 126 chr3 51830469 51830556 -107769227 - ORR1A2 LTR MaLR -1 326 244 6 980 347 225 14 27 chr3 51830586 51830659 -107769124 + RSINE1 SINE B4 91 162 -3 6 980 303 28 0 0 chr3 51830740 51830776 -107769007 + (GA)n Simple_repeat Simple_repeat 1 36 0 6 980 183 321 83 99 chr3 51830900 51831021 -107768762 + L2b LINE L2 3253 3371 -4 6 980 793 286 101 40 chr3 51831287 51831535 -107768248 + B4 SINE B4 7 269 -23 6 980 189 0 0 0 chr3 51831535 51831556 -107768227 + (CA)n Simple_repeat Simple_repeat 2 22 0 6 980 1202 220 7 45 chr3 51832376 51832666 -107767117 + Lx7 LINE L1 7137 7415 -281 6 980 219 69 0 0 chr3 51832666 51832695 -107767088 + (TG)n Simple_repeat Simple_repeat 1 29 0 6 980 444 93 18 8 chr3 51832794 51832900 -107766883 - B2_Mm2 SINE B2 -3 192 47 6 980 210 195 24 0 chr3 51832864 51832905 -107766878 - B4 SINE B4 -210 82 41 6 980 1467 40 6 6 chr3 51832928 51833105 -107766678 - B2_Mm1t SINE B2 -14 179 3 6 980 509 199 0 62 chr3 51833106 51833251 -107766532 + Lx7 LINE L1 7560 7695 -1 6 980 229 265 96 60 chr3 51834878 51834983 -107764800 - MIR SINE MIR -150 126 27 6 980 231 245 0 0 chr3 51836033 51836082 -107763701 + (TA)n Simple_repeat Simple_repeat 2 50 0 6 980 486 218 450 73 chr3 51836880 51837082 -107762701 + B4A SINE B4 2 279 -13 6 980 724 130 7 7 chr3 51837127 51837266 -107762517 + (GA)n Simple_repeat Simple_repeat 2 140 0 6 980 532 314 73 0 chr3 51838682 51838886 -107760897 + ID_B1 SINE B4 3 221 -3 6 980 390 91 0 0 chr3 51838889 51838944 -107760839 + (GGGA)n Simple_repeat Simple_repeat 2 56 0 6 980 331 246 0 0 chr3 51839804 51839869 -107759914 - ID4 SINE ID -14 69 5 6 980 882 188 0 7 chr3 51839882 51840032 -107759751 - B1_Mur4 SINE Alu -1 149 1 6 980 358 255 5 44 chr3 51840036 51840139 -107759644 - PB1 SINE Alu 0 120 34 6 980 497 16 16 0 chr3 51841453 51841515 -107758268 + (CA)n Simple_repeat Simple_repeat 2 64 0 6 980 1134 120 0 0 chr3 51842463 51842638 -107757145 + (GAA)n Simple_repeat Simple_repeat 3 177 0 6 980 960 67 79 36 chr3 51842788 51842928 -107756855 + B1_Mus1 SINE Alu 2 147 -1 6 980 451 312 44 73 chr3 51843105 51843309 -107756474 + B3 SINE B2 3 200 -16 6 980 333 68 0 0 chr3 51843309 51843353 -107756430 + (CACG)n Simple_repeat Simple_repeat 4 47 0 6 980 272 278 26 61 chr3 51843372 51843487 -107756296 + L1MA6 LINE L1 6038 6148 -152 6 980 618 14 0 0 chr3 51843487 51843558 -107756225 + (TTTC)n Simple_repeat Simple_repeat 2 72 0 6 980 548 305 63 24 chr3 51844163 51844368 -107755415 + B4 SINE B4 2 214 -78 6 980 686 131 82 0 chr3 51844562 51844684 -107755099 + B1_Mus1 SINE Alu 4 135 -13 6 980 306 0 0 0 chr3 51844684 51844718 -107755065 + (CAAAA)n Simple_repeat Simple_repeat 1 34 0 6 980 603 123 175 0 chr3 51844786 51844900 -107754883 + B1_Mm SINE Alu 1 134 -13 6 980 360 0 0 0 chr3 51845064 51845104 -107754679 + (TG)n Simple_repeat Simple_repeat 2 41 0 6 980 243 314 39 91 chr3 51846421 51846575 -107753208 + MIR3 SINE MIR 60 205 -3 6 980 237 271 336 21 chr3 51846829 51846962 -107752821 - MIR SINE MIR -68 194 36 6 980 391 315 15 0 chr3 51847140 51847270 -107752513 - B4 SINE B4 -158 134 3 6 980 332 226 31 41 chr3 51849408 51849505 -107750278 + PB1D10 SINE Alu 13 108 -9 6 980 303 28 0 0 chr3 51849855 51849891 -107749892 + (CA)n Simple_repeat Simple_repeat 2 37 0 6 980 684 263 83 55 chr3 51852497 51852714 -107747069 + B4A SINE B4 7 229 -63 6 980 676 224 147 5 chr3 51853418 51853602 -107746181 - ID_B1 SINE B4 -13 211 2 6 980 1893 141 56 33 chr3 51854305 51854664 -107745119 + ORR1B2 LTR MaLR 1 367 0 6 980 217 75 24 24 chr3 51855029 51855070 -107744713 + (CTATA)n Simple_repeat Simple_repeat 4 44 0 6 980 190 337 11 67 chr3 51855074 51855163 -107744620 - L2a LINE L2 -22 3404 3321 6 980 1972 136 18 51 chr3 51855306 51855639 -107744144 + ORR1A3 LTR MaLR 1 322 -4 6 980 209 316 38 12 chr3 51857005 51857085 -107742698 + L2c LINE L2 3083 3164 -223 6 980 1813 263 118 47 chr3 51857155 51858043 -107741740 - MTD-int LTR MaLR -157 941 1 6 980 1277 234 181 11 chr3 51858043 51858397 -107741386 - MTD LTR MaLR 0 419 6 6 980 249 337 0 12 chr3 51858518 51858602 -107741181 - B1F2 SINE Alu -62 87 5 6 980 832 288 146 6 chr3 51858663 51859005 -107740778 - MLT1B LTR MaLR 0 390 1 6 980 227 140 0 20 chr3 51859990 51860041 -107739742 + (TG)n Simple_repeat Simple_repeat 1 50 0 6 980 654 183 0 32 chr3 51860062 51860248 -107739535 + (TG)n Simple_repeat Simple_repeat 1 180 0 6 980 730 262 148 16 chr3 51860301 51860557 -107739226 - B4 SINE B4 0 292 3 6 980 234 0 0 0 chr3 51860951 51860977 -107738806 + (TG)n Simple_repeat Simple_repeat 2 27 0 6 980 546 290 25 31 chr3 51861002 51861162 -107738621 - RSINE1 SINE B4 -4 161 3 6 980 358 191 159 63 chr3 51861238 51861347 -107738436 - B1_Mur4 SINE Alu -26 124 5 6 980 791 218 55 0 chr3 51862372 51862574 -107737209 + B3 SINE B2 1 213 -3 6 980 313 256 0 25 chr3 51862652 51862732 -107737051 + ID_B1 SINE B4 147 224 0 6 980 369 0 0 0 chr3 51863295 51863336 -107736447 + (TG)n Simple_repeat Simple_repeat 1 41 0 6 980 201 261 0 0 chr3 51863555 51863601 -107736182 + CT-rich Low_complexity Low_complexity 2 47 0 6 980 373 292 8 74 chr3 51863610 51863732 -107736051 - PB1D7 SINE Alu -6 114 1 6 980 339 321 37 19 chr3 51864008 51864116 -107735667 + B3A SINE B2 2 111 -105 6 980 204 304 0 0 chr3 51864714 51864760 -107735023 + L2c LINE L2 3263 3308 -79 6 980 180 235 0 0 chr3 51864895 51864929 -107734854 + L2c LINE L2 3328 3361 -14 6 980 341 75 0 19 chr3 51867547 51867601 -107732182 + (TG)n Simple_repeat Simple_repeat 2 54 0 6 980 225 178 0 0 chr3 51867602 51867647 -107732136 + GA-rich Low_complexity Low_complexity 2 46 0 6 980 952 252 12 56 chr3 51867668 51867920 -107731863 - B4 SINE B4 -2 290 50 6 980 270 0 0 0 chr3 51868153 51868183 -107731600 + (A)n Simple_repeat Simple_repeat 1 30 0 6 980 426 288 43 61 chr3 51868632 51868653 -107731130 + ID_B1 SINE B4 65 224 0 6 980 679 201 7 16 chr3 51868653 51868795 -107730988 + B1_Mur1 SINE Alu 1 147 -2 6 980 548 264 220 26 chr3 51868815 51869170 -107730613 - L1MC4 LINE L1 -671 7371 6940 6 980 429 20 0 0 chr3 51869170 51869220 -107730563 + (TCCA)n Simple_repeat Simple_repeat 3 52 0 6 980 548 232 173 38 chr3 51869220 51869335 -107730448 - L1MC4 LINE L1 -1079 6963 6825 6 980 297 0 0 0 chr3 51870508 51870541 -107729242 + (CA)n Simple_repeat Simple_repeat 1 33 0 6 980 205 264 0 0 chr3 51870872 51870925 -107728858 + L2a LINE L2 3374 3426 0 6 980 216 67 0 0 chr3 51871235 51871265 -107728518 + (CA)n Simple_repeat Simple_repeat 1 30 0 6 980 447 303 14 40 chr3 51871397 51871545 -107728238 - B4A SINE B4 -146 146 3 6 980 233 328 86 32 chr3 51871607 51871793 -107727990 - L1MC5 LINE L1 -103 7858 7663 7 980 205 176 0 0 chr3 51872547 51872581 -107727202 + (TATATG)n Simple_repeat Simple_repeat 4 37 0 7 980 279 0 0 0 chr3 51872666 51872697 -107727086 + (TG)n Simple_repeat Simple_repeat 2 32 0 7 980 309 89 0 0 chr3 51872697 51872741 -107727042 + (TA)n Simple_repeat Simple_repeat 2 46 0 7 980 248 128 43 0 chr3 51872842 51872889 -107726894 - B2_Mm2 SINE B2 -146 49 1 7 980 519 211 77 26 chr3 51873176 51873293 -107726490 + RSINE1 SINE B4 3 125 -40 7 980 432 202 214 0 chr3 51873435 51873524 -107726259 + PB1D9 SINE Alu 2 109 -11 7 980 570 29 0 0 chr3 51873543 51873611 -107726172 + (GA)n Simple_repeat Simple_repeat 2 69 0 7 980 563 252 32 8 chr3 51874990 51875114 -107724669 + RSINE1 SINE B4 15 141 -24 7 980 351 0 0 0 chr3 51875117 51875156 -107724627 + (CA)n Simple_repeat Simple_repeat 2 40 0 7 980 222 128 0 0 chr3 51875175 51875214 -107724569 + (GA)n Simple_repeat Simple_repeat 2 40 0 7 980 354 311 96 12 chr3 51875670 51875836 -107723947 + MIRb SINE MIR 80 259 -9 7 980 226 226 75 0 chr3 51876291 51876344 -107723439 - tRNA-Ala-GCY_ tRNA tRNA -13 62 6 7 980 189 132 0 0 chr3 51877028 51877066 -107722717 + (A)n Simple_repeat Simple_repeat 1 38 0 7 980 360 0 0 0 chr3 51877767 51877807 -107721976 + (TG)n Simple_repeat Simple_repeat 2 41 0 7 980 352 255 40 30 chr3 51877843 51877944 -107721839 + BC1_Mm scRNA scRNA 3 104 -48 7 980 228 208 38 0 chr3 51878218 51878271 -107721512 - ID4 SINE ID -9 74 20 7 980 324 0 0 0 chr3 51878370 51878406 -107721377 + (TTTTG)n Simple_repeat Simple_repeat 2 37 0 7 980 851 138 43 7 chr3 51878450 51878589 -107721194 + B1_Mur4 SINE Alu 1 144 -6 7 980 488 126 26 79 chr3 51878772 51878962 -107720821 + GA-rich Low_complexity Low_complexity 1 180 0 7 980 853 288 23 0 chr3 51880055 51880270 -107719513 + ID_B1 SINE B4 5 224 0 7 980 180 0 0 0 chr3 51880406 51880426 -107719357 + (CAGA)n Simple_repeat Simple_repeat 2 21 0 7 980 443 18 18 0 chr3 51881091 51881147 -107718636 + (GGAA)n Simple_repeat Simple_repeat 3 59 0 7 980 807 166 20 7 chr3 51881833 51881979 -107717804 + B1_Mur4 SINE Alu 3 150 0 7 980 263 335 98 24 chr3 51882828 51883033 -107716750 - MIR SINE MIR 0 268 49 7 980 309 320 156 22 chr3 51883990 51884169 -107715614 + MIR SINE MIR 25 227 -35 7 980 279 54 0 0 chr3 51885034 51885071 -107714712 + (CCCCCA)n Simple_repeat Simple_repeat 1 37 0 7 980 504 72 0 0 chr3 51885278 51885347 -107714436 + (TC)n Simple_repeat Simple_repeat 2 70 0 7 980 674 292 95 48 chr3 51885414 51885666 -107714117 - B4 SINE B4 -16 276 13 7 980 455 219 8 81 chr3 51885834 51885958 -107713825 + ID_B1 SINE B4 110 224 0 7 980 213 191 172 50 chr3 51886430 51886441 -107713342 + B1F SINE Alu 2 112 -37 7 980 236 276 114 11 chr3 51886441 51886529 -107713254 + ID_B1 SINE B4 94 190 -34 7 980 452 279 0 98 chr3 51886698 51886841 -107712942 - ID_B1 SINE B4 0 224 96 7 980 181 257 53 79 chr3 51886943 51887019 -107712764 - MIRc SINE MIR -152 116 43 7 980 468 0 0 0 chr3 51887473 51887525 -107712258 + (TG)n Simple_repeat Simple_repeat 2 53 0 7 980 667 250 124 56 chr3 51887531 51887798 -107711985 - B4 SINE B4 -5 287 3 7 980 825 183 7 0 chr3 51888009 51888151 -107711632 - B1F1 SINE Alu -1 148 6 7 980 1050 185 23 28 chr3 51888233 51888450 -107711333 + B3 SINE B2 1 216 0 7 980 186 43 0 0 chr3 51889096 51889119 -107710664 + (GTTTG)n Simple_repeat Simple_repeat 2 24 0 7 980 937 108 0 23 chr3 51889127 51889260 -107710523 - B1_Mur3 SINE Alu -18 131 2 7 980 518 212 53 9 chr3 51889425 51889539 -107710244 + PB1D7 SINE Alu 2 120 0 7 980 243 0 0 0 chr3 51889924 51889951 -107709832 + (CA)n Simple_repeat Simple_repeat 2 28 0 7 980 225 94 0 0 chr3 51889986 51890018 -107709765 + (T)n Simple_repeat Simple_repeat 1 32 0 7 980 1196 62 0 0 chr3 51890022 51890167 -107709616 - B1_Mus1 SINE Alu 0 148 4 7 980 243 0 0 0 chr3 51890534 51890561 -107709222 + (CA)n Simple_repeat Simple_repeat 1 27 0 7 980 210 37 0 0 chr3 51891155 51891182 -107708601 + (CATA)n Simple_repeat Simple_repeat 4 30 0 7 980 692 269 114 11 chr3 51891298 51891561 -107708222 + B4A SINE B4 1 290 -2 7 980 225 196 0 0 chr3 51893315 51893361 -107706422 + CT-rich Low_complexity Low_complexity 4 49 0 7 980 897 217 68 5 chr3 51893394 51893584 -107706199 - B3 SINE B2 -5 211 10 7 980 710 282 57 0 chr3 51893602 51893811 -107705972 - ID_B1 SINE B4 -2 222 2 7 980 247 0 51 26 chr3 51895887 51895926 -107703857 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 7 980 681 272 57 146 chr3 51896565 51896845 -107702938 + B4 SINE B4 1 255 -37 7 980 321 289 0 0 chr3 51897895 51897971 -107701812 + ID4 SINE ID 2 77 -6 7 980 219 45 43 22 chr3 51898248 51898294 -107701489 + (CAAA)n Simple_repeat Simple_repeat 1 47 0 7 980 626 251 171 11 chr3 51898437 51898618 -107701165 + ID_B1 SINE B4 2 211 -13 7 980 699 268 19 0 chr3 51898654 51898811 -107700972 - RSINE1 SINE B4 -2 163 4 7 980 334 298 174 4 chr3 51899199 51899452 -107700331 - L3 LINE CR1 -137 4352 4057 7 980 1460 211 50 16 chr3 51900292 51900615 -107699168 - MTD LTR MaLR -73 346 13 7 980 216 0 0 0 chr3 51901642 51901666 -107698117 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 7 980 735 133 15 45 chr3 51901983 51902117 -107697666 + B1_Mus1 SINE Alu 19 148 0 7 980 217 48 47 23 chr3 51903250 51903293 -107696490 + (TAAA)n Simple_repeat Simple_repeat 2 45 0 7 981 338 310 0 31 chr3 51906052 51906215 -107693568 + G-rich Low_complexity Low_complexity 5 162 0 7 981 22 56 0 0 chr3 51907882 51907918 -107691865 + GC_rich Low_complexity Low_complexity 1 36 0 7 981 236 246 0 32 chr3 51908793 51908856 -107690927 + (CCG)n Simple_repeat Simple_repeat 1 61 0 7 981 276 91 0 0 chr3 51908856 51908900 -107690883 + (TCC)n Simple_repeat Simple_repeat 1 44 0 7 981 572 106 11 0 chr3 51909186 51909280 -107690503 + (TG)n Simple_repeat Simple_repeat 1 95 0 7 981 291 283 99 66 chr3 51909594 51909715 -107690068 - RSINE1 SINE B4 -21 144 20 7 981 3086 131 5 119 chr3 51910469 51911059 -107688724 - RMER15 LTR ERVL -2 573 51 7 981 550 260 114 124 chr3 51911394 51911587 -107688196 + B3 SINE B2 1 191 -4 7 981 204 125 0 0 chr3 51911628 51911660 -107688123 + (TATG)n Simple_repeat Simple_repeat 4 35 0 7 981 588 29 0 0 chr3 51912177 51912247 -107687536 + (TC)n Simple_repeat Simple_repeat 2 71 0 7 981 348 24 0 0 chr3 51912248 51912289 -107687494 + (CA)n Simple_repeat Simple_repeat 2 42 0 7 981 252 252 0 28 chr3 51912737 51912759 -107687024 + ORR1B1-int LTR MaLR 630 732 -777 7 981 820 173 0 54 chr3 51912759 51912843 -107686940 + B1_Mus2 SINE Alu 2 85 -62 7 981 4396 114 126 82 chr3 51912843 51913711 -107686072 - RMER17A2 LTR ERVK 0 906 1 7 981 820 173 0 54 chr3 51913711 51913773 -107686010 + B1_Mus2 SINE Alu 86 140 -7 7 981 1308 103 3 3 chr3 51913773 51914114 -107685669 + (TGGA)n Simple_repeat Simple_repeat 1 341 0 7 981 1323 104 0 4 chr3 51914130 51914380 -107685403 + (TGGA)n Simple_repeat Simple_repeat 1 249 0 7 981 859 257 113 22 chr3 51914448 51914679 -107685104 + B4 SINE B4 22 273 -19 7 981 335 173 38 62 chr3 51915723 51915803 -107683980 + ID4_ SINE ID 4 81 -2 7 981 263 161 18 0 chr3 51915910 51915966 -107683817 + (TG)n Simple_repeat Simple_repeat 1 57 0 7 981 392 299 99 78 chr3 51915978 51916261 -107683522 - B4A SINE B4 -2 290 2 7 981 294 322 52 26 chr3 51917125 51917278 -107682505 - MIRb SINE MIR -76 192 36 7 981 416 225 143 67 chr3 51918205 51918360 -107681423 + MLT1A LTR MaLR 1 179 -211 7 981 623 264 16 27 chr3 51918360 51918543 -107681240 + B3A SINE B2 2 182 -16 7 981 366 292 65 95 chr3 51918543 51918776 -107681007 + MLT1A LTR MaLR 180 361 -29 7 981 346 393 0 8 chr3 51918808 51918926 -107680857 - RSINE1 SINE B4 0 165 49 7 981 993 237 36 27 chr3 51919889 51920110 -107679673 - B4 SINE B4 0 292 70 7 981 395 326 154 26 chr3 51920132 51920327 -107679456 + ID_B1 SINE B4 1 220 -4 7 981 270 73 0 0 chr3 51920370 51920411 -107679372 + (TG)n Simple_repeat Simple_repeat 1 41 0 7 981 1204 55 0 14 chr3 51920506 51920643 -107679140 + B1_Mus2 SINE Alu 2 138 -9 7 981 261 0 0 0 chr3 51920643 51920672 -107679111 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 7 981 225 285 51 127 chr3 51921399 51921556 -107678227 + MT2B2 LTR ERVL 143 287 -297 7 981 606 206 0 72 chr3 51921517 51921669 -107678114 + ID_B1 SINE B4 78 218 -6 7 981 884 170 0 0 chr3 51921534 51921675 -107678108 + B1_Mur1 SINE Alu 9 149 0 7 981 343 257 103 2 chr3 51921687 51921804 -107677979 + ID4 SINE ID 2 128 -24 7 981 416 255 132 5 chr3 51921804 51921993 -107677790 + L1M3 LINE L1 5611 5823 -348 7 981 744 250 30 71 chr3 51922015 51922213 -107677570 - MTE2b LTR MaLR -186 193 4 7 981 572 154 125 7 chr3 51922285 51922312 -107677471 - Lx7 LINE L1 -4 7692 7660 7 981 366 23 0 0 chr3 51922312 51922355 -107677428 + (TA)n Simple_repeat Simple_repeat 1 43 0 7 981 572 154 125 7 chr3 51922355 51922471 -107677312 - Lx7 LINE L1 -37 7659 7533 7 981 243 0 0 0 chr3 51922579 51922606 -107677177 + (CA)n Simple_repeat Simple_repeat 2 28 0 7 981 281 335 64 35 chr3 51922653 51922826 -107676957 + L2 LINE L2 2692 2869 -550 7 981 1806 213 44 34 chr3 51923081 51923494 -107676289 - MTD LTR MaLR 0 419 3 7 981 307 351 97 0 chr3 51923675 51923809 -107675974 - MIR SINE MIR 0 262 116 8 981 442 149 0 146 chr3 51923888 51923998 -107675785 + MT2B LTR ERVL 171 264 -337 8 981 1019 62 0 0 chr3 51923904 51924033 -107675750 + B1_Mus1 SINE Alu 20 148 0 8 981 403 269 11 0 chr3 51924178 51924271 -107675512 + B4A SINE B4 195 288 -4 8 981 196 305 85 0 chr3 51924728 51924787 -107674996 + MIRm SINE MIR 48 111 -165 8 981 899 35 9 0 chr3 51925594 51925709 -107674074 + (GGGAGA)n Simple_repeat Simple_repeat 3 118 0 8 981 189 0 0 0 chr3 51925789 51925810 -107673973 + (A)n Simple_repeat Simple_repeat 1 21 0 8 981 1228 242 84 68 chr3 51925814 51926182 -107673601 + MTEb LTR MaLR 4 377 -2 8 981 521 329 33 7 chr3 51926822 51926975 -107672808 + RSINE1 SINE B4 7 163 -2 8 981 390 293 158 54 chr3 51927086 51927183 -107672600 + L1MEg LINE L1 715 817 -5267 8 981 1115 89 0 0 chr3 51927183 51927329 -107672454 + B1_Mus1 SINE Alu 3 148 0 8 981 390 293 158 54 chr3 51927329 51927599 -107672184 + L1MEg LINE L1 818 1119 -4965 8 981 201 291 25 25 chr3 51927902 51927983 -107671800 - MIR SINE MIR -80 182 102 8 981 468 194 40 20 chr3 51928211 51928311 -107671472 + PB1D10 SINE Alu 1 102 -15 8 981 550 284 21 7 chr3 51928587 51928729 -107671054 + RSINE1 SINE B4 2 145 -20 8 981 324 0 0 0 chr3 51928730 51928766 -107671017 + (CA)n Simple_repeat Simple_repeat 2 37 0 8 981 1274 34 0 0 chr3 51928898 51929044 -107670739 + B1_Mus2 SINE Alu 2 147 0 8 981 207 0 0 0 chr3 51929044 51929067 -107670716 + (A)n Simple_repeat Simple_repeat 1 23 0 8 981 204 67 0 0 chr3 51929309 51929339 -107670444 + (TG)n Simple_repeat Simple_repeat 1 30 0 8 981 299 204 0 18 chr3 51929368 51929423 -107670360 - RSINE1 SINE B4 -29 136 83 8 981 262 336 28 56 chr3 51929483 51929625 -107670158 - B4A SINE B4 -149 143 6 8 981 288 0 0 0 chr3 51929847 51929879 -107669904 + (TTTA)n Simple_repeat Simple_repeat 3 34 0 8 981 569 252 83 7 chr3 51929882 51930026 -107669757 - RSINE1 SINE B4 -8 157 3 8 981 929 305 77 29 chr3 51930218 51930830 -107668953 - L1MD2 LINE L1 -355 6004 5364 8 981 241 290 0 0 chr3 51930835 51930897 -107668886 + (TG)n Simple_repeat Simple_repeat 1 62 0 8 981 998 272 56 30 chr3 51930914 51931343 -107668440 - L1MD2 LINE L1 -762 5384 4945 8 981 594 131 0 0 chr3 51931353 51931452 -107668331 + (TCCC)n Simple_repeat Simple_repeat 4 102 0 8 981 563 302 97 31 chr3 51931601 51931896 -107667887 - L1MD2 LINE L1 -1354 4792 4485 8 981 189 0 0 0 chr3 51931896 51931917 -107667866 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 8 981 563 302 97 31 chr3 51931917 51931970 -107667813 - L1MD2 LINE L1 -1662 4484 4422 8 981 673 268 42 46 chr3 51931970 51932255 -107667528 + RLTR15 LTR ERVK 1 284 -75 8 981 501 274 33 176 chr3 51932597 51932841 -107666942 + MTE2a LTR MaLR 5 213 -166 8 981 561 30 0 0 chr3 51932842 51932909 -107666874 + (TTCCG)n Simple_repeat Simple_repeat 5 71 0 8 981 724 105 0 33 chr3 51932909 51933032 -107666751 - B1_Mur4 SINE Alu -12 138 22 8 981 1934 163 49 46 chr3 51933075 51933545 -107666238 + RMER17B LTR ERVK 1 439 -519 8 981 1781 226 93 74 chr3 51933547 51934086 -107665697 + RMER13B LTR ERVK 356 904 -4 8 981 233 287 154 29 chr3 51934105 51934209 -107665574 + MTE2a LTR MaLR 287 403 -16 8 981 537 221 19 150 chr3 51934450 51934610 -107665173 + B1F1 SINE Alu 2 140 -9 8 981 189 0 0 0 chr3 51934739 51934760 -107665023 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 8 981 425 72 0 5 chr3 51934775 51934839 -107664944 - B2_Mm2 SINE B2 -107 109 48 8 981 1240 81 34 23 chr3 51934868 51935044 -107664739 - B2_Mm1t SINE B2 -14 179 2 8 981 648 171 122 0 chr3 51935326 51935449 -107664334 + B1_Mur4 SINE Alu 5 142 -8 8 981 355 294 93 29 chr3 51935333 51935473 -107664310 + B4A SINE B4 96 244 -48 8 981 337 318 18 0 chr3 51935652 51935762 -107664021 - PB1D10 SINE Alu -5 112 1 8 981 553 258 92 0 chr3 51935913 51936076 -107663707 - B3A SINE B2 -16 182 5 8 981 213 139 0 0 chr3 51936168 51936211 -107663572 + (TC)n Simple_repeat Simple_repeat 1 43 0 8 981 681 284 75 10 chr3 51936370 51936569 -107663214 - B3 SINE B2 -4 212 1 8 981 465 19 0 0 chr3 51936595 51936649 -107663134 + (GA)n Simple_repeat Simple_repeat 1 54 0 8 981 987 256 58 22 chr3 51937306 51937581 -107662202 + B4 SINE B4 1 285 -7 8 981 187 157 19 19 chr3 51937586 51937638 -107662145 + (CA)n Simple_repeat Simple_repeat 1 52 0 8 981 240 211 240 62 chr3 51937928 51938024 -107661759 + PB1D10 SINE Alu 4 116 -1 8 981 496 246 89 76 chr3 51938293 51938451 -107661332 - RSINE1 SINE B4 0 165 6 8 981 575 109 20 0 chr3 51938657 51938758 -107661025 + (TTCC)n Simple_repeat Simple_repeat 1 103 0 8 981 430 270 0 0 chr3 51939249 51939338 -107660445 - RSINE1 SINE B4 -2 163 75 8 981 635 250 42 15 chr3 51939692 51940009 -107659774 + MTE2b LTR MaLR 1 384 0 8 981 1489 190 113 52 chr3 51940071 51940433 -107659350 - ORR1C2 LTR MaLR 0 384 1 8 981 284 298 0 0 chr3 51941728 51941812 -107657971 + (TG)n Simple_repeat Simple_repeat 1 84 0 8 981 611 331 5 57 chr3 51941820 51942012 -107657771 - B4 SINE B4 -4 288 107 8 981 243 247 141 47 chr3 51943265 51943350 -107656433 + BC1_Mm scRNA scRNA 6 98 -54 8 981 1069 241 97 30 chr3 51943460 51943729 -107656054 + B4A SINE B4 5 291 -1 8 981 232 314 45 90 chr3 51943609 51943899 -107655884 - RMER12 LTR ERVK -270 1052 776 8 981 231 233 0 48 chr3 51943902 51944028 -107655755 + (CATA)n Simple_repeat Simple_repeat 3 122 0 8 981 310 297 43 9 chr3 51945554 51945672 -107654111 + B1F1 SINE Alu 1 118 -2 8 981 242 250 155 35 chr3 51946025 51946141 -107653642 - MamRep605 Unknown Unknown -609 267 138 8 981 210 270 40 13 chr3 51946238 51946313 -107653470 - RSINE1 SINE B4 -1 164 88 8 981 822 181 7 15 chr3 51946490 51946625 -107653158 - B1_Mus2 SINE Alu -8 139 6 8 981 245 285 46 9 chr3 51947477 51947596 -107652187 + L1M2 LINE L1 5702 5824 -476 8 981 830 156 20 33 chr3 51947600 51947752 -107652031 + B1_Mur4 SINE Alu 1 150 0 8 981 402 100 0 0 chr3 51947754 51947814 -107651969 + (GGA)n Simple_repeat Simple_repeat 3 62 0 8 981 228 315 0 11 chr3 51947825 51947915 -107651868 + L1M2 LINE L1 5836 5924 -376 8 981 1493 109 63 0 chr3 51948023 51948244 -107651539 - Lx4A LINE L1 -250 6808 6574 8 981 1010 168 0 18 chr3 51948263 51948427 -107651356 + Lx4A LINE L1 6809 6969 -89 8 981 288 0 0 0 chr3 51948500 51948532 -107651251 + (CA)n Simple_repeat Simple_repeat 1 32 0 8 981 270 0 0 0 chr3 51948544 51948574 -107651209 + (TG)n Simple_repeat Simple_repeat 1 30 0 8 981 198 103 0 0 chr3 51948622 51948651 -107651132 + (TCC)n Simple_repeat Simple_repeat 2 30 0 8 981 270 325 104 82 chr3 51949017 51949285 -107650498 + L3 LINE CR1 3053 3326 -1163 8 981 830 235 154 0 chr3 51949433 51949680 -107650103 - B4 SINE B4 -4 288 4 8 981 500 89 13 0 chr3 51949682 51949761 -107650022 + (TCCC)n Simple_repeat Simple_repeat 2 81 0 8 981 213 320 112 44 chr3 51950570 51950730 -107649053 + L2b LINE L2 3157 3327 -48 8 981 214 409 36 18 chr3 51950894 51951061 -107648722 + L2 LINE L2 128 297 -3122 8 981 235 357 90 14 chr3 51951104 51951249 -107648534 + LTR33 LTR ERVL 94 249 -266 8 981 1268 303 70 67 chr3 51951209 51952199 -107647584 - ORR1D2-int LTR MaLR -423 1086 1 8 981 589 333 62 28 chr3 51952199 51952551 -107647232 - ORR1D2 LTR MaLR 0 370 7 8 981 489 34 0 0 chr3 51953374 51953433 -107646350 + (TAGA)n Simple_repeat Simple_repeat 4 62 0 8 981 282 237 34 42 chr3 51953835 51953954 -107645829 + (CATATA)n Simple_repeat Simple_repeat 6 123 0 8 981 189 0 0 0 chr3 51953976 51953997 -107645786 + (CA)n Simple_repeat Simple_repeat 2 22 0 8 981 657 327 154 19 chr3 51953998 51954316 -107645467 + MLT1A0 LTR MaLR 11 371 -3 8 981 459 232 25 67 chr3 51954482 51954602 -107645181 + PB1D10 SINE Alu 2 116 -1 8 981 300 344 123 75 chr3 51954827 51955145 -107644638 + L1MEc LINE L1 46 378 -6022 8 981 667 176 32 8 chr3 51955504 51955630 -107644153 + B1_Mur2 SINE Alu 1 129 -20 8 981 471 63 0 0 chr3 51955631 51955694 -107644089 + (TCTA)n Simple_repeat Simple_repeat 1 63 0 8 981 228 127 62 16 chr3 51955696 51955760 -107644023 + (TA)n Simple_repeat Simple_repeat 2 68 0 8 981 216 200 0 0 chr3 51955847 51955897 -107643886 + (TATATG)n Simple_repeat Simple_repeat 5 54 0 8 981 270 228 139 0 chr3 51955944 51956023 -107643760 + L1MEc LINE L1 699 788 -5612 8 981 240 35 0 0 chr3 51956240 51956269 -107643514 + (T)n Simple_repeat Simple_repeat 1 29 0 8 981 280 42 20 41 chr3 51956272 51956321 -107643462 - B1_Mus2 SINE Alu 0 147 100 8 981 736 310 102 23 chr3 51956305 51956609 -107643174 - MLT1A0 LTR MaLR -37 328 1 8 981 858 278 151 80 chr3 51956721 51957375 -107642408 + L1MEc LINE L1 1217 1917 -4483 8 981 316 296 49 0 chr3 51957386 51957467 -107642316 + B1F1 SINE Alu 13 97 -52 8 981 477 0 0 0 chr3 51957477 51957530 -107642253 + (CA)n Simple_repeat Simple_repeat 2 54 0 8 981 264 271 53 23 chr3 51957603 51957735 -107642048 + L1MEc LINE L1 2254 2389 -4011 8 981 360 303 62 29 chr3 51957888 51958160 -107641623 + L1MEc LINE L1 2484 2764 -3555 8 981 219 36 0 0 chr3 51958248 51958276 -107641507 + (CAA)n Simple_repeat Simple_repeat 2 29 0 8 981 1339 262 52 14 chr3 51959010 51959355 -107640428 + ORR1D2 LTR MaLR 7 364 -6 8 981 225 259 19 0 chr3 51959487 51959541 -107640242 - ID4_ SINE ID -27 56 2 8 981 329 174 0 68 chr3 51960208 51960282 -107639501 + MTEb LTR MaLR 278 346 -33 8 981 205 278 0 18 chr3 51960299 51960354 -107639429 + (TG)n Simple_repeat Simple_repeat 1 54 0 8 981 790 168 15 0 chr3 51961051 51961182 -107638601 - B1_Mur2 SINE Alu 0 149 17 8 981 373 250 125 79 chr3 51961182 51961202 -107638581 - B4 SINE B4 -66 225 68 8 981 284 330 48 0 chr3 51961331 51961434 -107638349 + Lx8 LINE L1 6953 7060 -413 8 981 1715 287 99 84 chr3 51962432 51963025 -107636758 - MLT1E1A LTR MaLR -10 670 43 8 981 255 286 95 0 chr3 51963077 51963161 -107636622 - LTR16B LTR ERVL -371 92 1 8 981 234 328 98 53 chr3 51963202 51963334 -107636449 + L2b LINE L2 3238 3375 0 9 981 615 22 34 0 chr3 51963442 51963531 -107636252 + (TC)n Simple_repeat Simple_repeat 1 92 0 9 981 411 302 90 47 chr3 51964000 51964233 -107635550 + L1M3 LINE L1 4150 4392 -1748 9 981 190 352 83 0 chr3 51964740 51964848 -107634935 - L2a LINE L2 -5 3421 3305 9 981 349 263 12 8 chr3 51964894 51964993 -107634790 + MTE2a LTR MaLR 1 100 -319 9 981 249 62 0 0 chr3 51965051 51965083 -107634700 + (TG)n Simple_repeat Simple_repeat 1 32 0 9 981 264 160 50 10 chr3 51965087 51965188 -107634595 + (TA)n Simple_repeat Simple_repeat 2 106 0 9 981 606 291 24 48 chr3 51965213 51965419 -107634364 + MTE2a LTR MaLR 165 365 -14 9 981 201 286 0 0 chr3 51965438 51965487 -107634296 + C-rich Low_complexity Low_complexity 1 49 0 9 981 295 319 11 21 chr3 51965488 51965581 -107634202 - BC1_Mm scRNA scRNA -53 99 8 9 981 288 0 0 0 chr3 51966421 51966453 -107633330 + (CA)n Simple_repeat Simple_repeat 2 33 0 9 981 565 14 27 0 chr3 51966478 51966552 -107633231 + (TCTA)n Simple_repeat Simple_repeat 1 76 0 9 981 697 194 9 5 chr3 51966611 51966759 -107633024 + B1_Mus1 SINE Alu 2 147 -1 9 981 301 273 31 112 chr3 51966804 51966965 -107632818 - L4 LINE RTE -194 1835 1688 9 981 387 0 0 0 chr3 51966982 51967025 -107632758 + (TC)n Simple_repeat Simple_repeat 2 44 0 9 981 267 31 0 0 chr3 51967025 51967056 -107632727 + (TG)n Simple_repeat Simple_repeat 1 32 0 9 981 291 275 174 11 chr3 51967081 51967173 -107632610 - B4A SINE B4 0 292 186 9 981 287 280 82 27 chr3 51967187 51967297 -107632486 - B4A SINE B4 -147 145 30 9 981 477 212 79 50 chr3 51967349 51967488 -107632295 - B1_Mus2 SINE Alu 0 147 5 9 981 227 284 71 47 chr3 51967945 51968030 -107631753 - Tigger12A DNA MER2_type -1 790 704 9 981 279 386 18 6 chr3 51968094 51968258 -107631525 - Tigger12A DNA MER2_type -411 182 17 9 981 24 0 0 0 chr3 51968281 51968305 -107631478 + GC_rich Low_complexity Low_complexity 1 24 0 9 981 620 283 128 30 chr3 51968372 51968638 -107631145 + B4 SINE B4 1 292 0 9 981 180 0 0 0 chr3 51968663 51968683 -107631100 + (CA)n Simple_repeat Simple_repeat 2 21 0 9 981 462 36 0 0 chr3 51969613 51969669 -107630114 + (TG)n Simple_repeat Simple_repeat 2 57 0 9 981 367 101 12 12 chr3 51969673 51969753 -107630030 + (TTTG)n Simple_repeat Simple_repeat 2 81 0 9 981 283 241 0 0 chr3 51970348 51970402 -107629381 + B1F1 SINE Alu 2 55 -94 9 981 259 265 0 29 chr3 51970402 51970414 -107629369 + ID_B1 SINE B4 83 146 -78 9 981 406 290 14 78 chr3 51970485 51970627 -107629156 - RSINE1 SINE B4 -29 136 4 9 981 276 200 8 42 chr3 51970687 51970807 -107628976 + (TG)n Simple_repeat Simple_repeat 1 116 0 9 981 648 263 28 22 chr3 51970810 51970989 -107628794 - B3A SINE B2 -18 180 1 9 981 232 328 86 47 chr3 51971106 51971234 -107628549 + L2a LINE L2 3293 3425 -1 9 981 24 53 0 0 chr3 51972440 51972478 -107627305 + AT_rich Low_complexity Low_complexity 1 38 0 9 981 390 305 85 8 chr3 51973559 51973688 -107626095 - B1F1 SINE Alu -5 144 6 9 981 1206 173 19 0 chr3 51974054 51974262 -107625521 - Lx9 LINE L1 -454 7190 6979 9 981 1115 169 53 9 chr3 51974263 51974490 -107625293 + Lx9 LINE L1 7222 7458 -186 9 981 201 217 33 0 chr3 51974943 51975003 -107624780 + (TCTG)n Simple_repeat Simple_repeat 2 63 0 9 981 304 246 58 0 chr3 51975483 51975552 -107624231 + ID4_ SINE ID 5 77 -6 9 981 539 301 80 0 chr3 51975493 51975656 -107624127 + ID_B1 SINE B4 20 195 -29 9 981 303 298 202 0 chr3 51975693 51975807 -107623976 + B4A SINE B4 3 139 -153 9 981 282 333 101 27 chr3 51975889 51976077 -107623706 + LTR50 LTR ERVL 479 680 -115 9 981 368 279 71 9 chr3 51976104 51976216 -107623567 - RSINE1 SINE B4 -2 163 45 9 981 1063 312 42 97 chr3 51976287 51976791 -107622992 - MLT2B1 LTR ERVL -43 477 2 9 981 243 229 69 46 chr3 51976802 51976889 -107622894 + LTR50 LTR ERVL 707 795 0 9 981 243 301 100 58 chr3 51976977 51977097 -107622686 + MLT1K LTR MaLR 106 230 -365 9 981 449 273 89 22 chr3 51977167 51977302 -107622481 + MLT2B1 LTR ERVL 42 185 -335 9 981 1157 107 53 0 chr3 51977512 51977681 -107622102 + B2_Mm1t SINE B2 2 179 -14 9 981 378 35 52 0 chr3 51977737 51977795 -107621988 + B2_Mm1a SINE B2 127 187 -6 9 981 888 281 55 4 chr3 51978187 51978458 -107621325 + B4A SINE B4 4 288 -4 9 981 417 70 0 0 chr3 51978465 51978522 -107621261 + (CATA)n Simple_repeat Simple_repeat 4 60 0 9 981 369 0 0 0 chr3 51979409 51979450 -107620333 + (CA)n Simple_repeat Simple_repeat 1 41 0 9 981 568 313 52 39 chr3 51979715 51980001 -107619782 - B4A SINE B4 -2 290 1 9 981 535 196 11 0 chr3 51980500 51980592 -107619191 + RSINE1 SINE B4 3 95 -70 9 981 270 0 0 0 chr3 51980622 51980652 -107619131 + (TC)n Simple_repeat Simple_repeat 1 30 0 9 981 441 0 0 0 chr3 51980652 51980700 -107619083 + (CA)n Simple_repeat Simple_repeat 1 49 0 9 981 291 318 60 8 chr3 51980718 51980851 -107618932 + B4 SINE B4 2 141 -151 9 981 490 196 8 164 chr3 51981478 51981612 -107618171 + RSINE1 SINE B4 3 115 -50 9 981 360 0 0 0 chr3 51981631 51981671 -107618112 + (TC)n Simple_repeat Simple_repeat 1 40 0 9 981 483 274 120 40 chr3 51982004 51982179 -107617604 + MER3 DNA MER1_type 16 204 -5 9 981 402 21 0 0 chr3 51982210 51982257 -107617526 + (TG)n Simple_repeat Simple_repeat 1 47 0 9 981 288 0 0 0 chr3 51982257 51982288 -107617495 + (GA)n Simple_repeat Simple_repeat 1 32 0 9 981 441 147 18 9 chr3 51982289 51982343 -107617440 + (TG)n Simple_repeat Simple_repeat 2 56 0 9 981 342 0 0 0 chr3 51982343 51982381 -107617402 + (GA)n Simple_repeat Simple_repeat 1 38 0 9 981 441 147 18 9 chr3 51982381 51982436 -107617347 + (TG)n Simple_repeat Simple_repeat 2 57 0 9 981 186 71 0 0 chr3 51983371 51983399 -107616384 + (T)n Simple_repeat Simple_repeat 1 28 0 9 981 21 0 0 0 chr3 51983523 51983544 -107616239 + AT_rich Low_complexity Low_complexity 1 21 0 9 981 497 16 16 0 chr3 51984017 51984079 -107615704 + (TC)n Simple_repeat Simple_repeat 2 64 0 9 981 826 282 64 38 chr3 51984144 51984409 -107615374 - B4A SINE B4 -20 272 1 9 981 342 0 0 0 chr3 51985316 51985354 -107614429 + (TGG)n Simple_repeat Simple_repeat 3 40 0 9 981 357 24 0 0 chr3 51986254 51986296 -107613487 + (TC)n Simple_repeat Simple_repeat 2 43 0 9 981 357 62 0 0 chr3 51986296 51986343 -107613440 + (TG)n Simple_repeat Simple_repeat 1 48 0 9 981 204 111 0 0 chr3 51986531 51986567 -107613216 + (TTTTTG)n Simple_repeat Simple_repeat 3 38 0 9 981 484 288 30 0 chr3 51986650 51986782 -107613001 + ID_B1 SINE B4 70 205 -19 9 981 282 29 0 0 chr3 51986782 51986817 -107612966 + (TAAAA)n Simple_repeat Simple_repeat 3 37 0 9 981 228 309 0 42 chr3 51986819 51986890 -107612893 + ID4 SINE ID 2 69 -14 9 981 181 292 21 0 chr3 51986897 51986945 -107612838 - MIRc SINE MIR -106 162 114 9 981 281 179 127 13 chr3 51987900 51987934 -107611849 - B4A SINE B4 -201 91 50 9 981 438 20 0 0 chr3 51987934 51987985 -107611798 + (CA)n Simple_repeat Simple_repeat 2 52 0 9 981 281 225 14 0 chr3 51987985 51988029 -107611754 - B4A SINE B4 -243 49 5 9 981 597 228 0 0 chr3 51988996 51989241 -107610542 + (CA)n Simple_repeat Simple_repeat 1 245 0 9 981 354 141 228 13 chr3 51989277 51989356 -107610427 + PB1D10 SINE Alu 21 116 -1 9 981 243 152 0 0 chr3 51989384 51989430 -107610353 + GA-rich Low_complexity Low_complexity 1 46 0 9 981 183 184 0 0 chr3 51989563 51989601 -107610182 + GA-rich Low_complexity Low_complexity 4 41 0 9 981 398 290 189 18 chr3 51991263 51991544 -107608239 - ORR1D2 LTR MaLR -14 356 28 9 981 272 27 0 26 chr3 51992635 51992673 -107607110 + (TG)n Simple_repeat Simple_repeat 2 38 0 9 981 209 98 0 24 chr3 51992721 51992763 -107607020 + (TG)n Simple_repeat Simple_repeat 2 42 0 9 981 429 97 0 0 chr3 51992807 51992879 -107606904 + (TG)n Simple_repeat Simple_repeat 1 72 0 9 981 901 257 28 9 chr3 51992880 51993092 -107606691 - B4 SINE B4 -74 218 3 9 981 244 287 7 0 chr3 51993681 51993832 -107605951 + (TG)n Simple_repeat Simple_repeat 1 152 0 9 981 646 263 215 9 chr3 51994842 51994925 -107604858 + B4 SINE B4 5 87 -205 9 981 447 19 0 0 chr3 51994925 51994977 -107604806 + (TG)n Simple_repeat Simple_repeat 2 53 0 9 981 646 263 215 9 chr3 51994977 51995112 -107604671 + B4 SINE B4 88 267 -25 9 981 186 103 0 0 chr3 51995121 51995150 -107604633 + (TATATG)n Simple_repeat Simple_repeat 6 34 0 9 981 985 143 12 24 chr3 51995231 51995396 -107604387 - B2_Mm2 SINE B2 -32 163 1 9 981 218 56 0 27 chr3 51995581 51995618 -107604165 + (TA)n Simple_repeat Simple_repeat 2 37 0 9 981 533 292 0 32 chr3 51995682 51995806 -107603977 + ID_B1 SINE B4 84 203 -21 9 981 818 211 51 6 chr3 51995818 51995994 -107603789 + ID_B1 SINE B4 32 215 -9 9 981 203 0 0 36 chr3 51996152 51996180 -107603603 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 9 981 1003 136 7 0 chr3 51996208 51996355 -107603428 - B1_Mur4 SINE Alu 0 150 3 9 981 1384 319 82 12 chr3 51998103 51998612 -107601171 - MLT1F LTR MaLR 0 595 1 9 981 1014 106 7 0 chr3 51999045 51999187 -107600596 + B1_Mus2 SINE Alu 5 147 0 9 981 182 33 0 62 chr3 51999187 51999219 -107600564 + (CAAA)n Simple_repeat Simple_repeat 3 32 0 9 981 257 279 15 0 chr3 51999421 51999489 -107600294 - MIRb SINE MIR -169 99 31 9 981 35 0 0 0 chr3 52000345 52000380 -107599403 + GC_rich Low_complexity Low_complexity 1 35 0 1 981 198 103 0 0 chr3 52000586 52000615 -107599168 + (GGGA)n Simple_repeat Simple_repeat 2 30 0 2 981 346 254 158 0 chr3 52001082 52001196 -107598587 - MIR3 SINE MIR -22 186 55 3 981 30 0 0 0 chr3 52001645 52001675 -107598108 + AT_rich Low_complexity Low_complexity 1 30 0 4 981 405 0 0 0 chr3 52004432 52004477 -107595306 + (TG)n Simple_repeat Simple_repeat 2 46 0 5 981 682 281 103 21 chr3 52004479 52004722 -107595061 - B4A SINE B4 -29 263 1 6 981 331 329 105 59 chr3 52004889 52005041 -107594742 - RSINE1 SINE B4 -4 161 3 7 981 494 114 28 19 chr3 52005105 52005212 -107594571 + (TCTA)n Simple_repeat Simple_repeat 3 110 0 8 981 1124 65 0 0 chr3 52005518 52005656 -107594127 + B1_Mus2 SINE Alu 1 138 -9 9 981 399 137 0 0 chr3 52006579 52006652 -107593131 + (CA)n Simple_repeat Simple_repeat 1 73 0 1 981 21572 192 88 53 chr3 52007094 52007908 -107591875 + Lx5 LINE L1 816 1584 -4292 1 981 1110 89 23 12 chr3 52007908 52008079 -107591704 + B2_Mm2 SINE B2 1 173 -22 1 981 1158 122 0 0 chr3 52008080 52008260 -107591523 + (GAA)n Simple_repeat Simple_repeat 1 180 0 1 981 21572 154 67 65 chr3 52008260 52008688 -107591095 + Lx5 LINE L1 1586 1995 -3882 1 981 1841 136 7 114 chr3 52008688 52009144 -107590639 - RMER17C LTR ERVK 0 410 4 1 981 21572 154 67 65 chr3 52009144 52012384 -107587399 + Lx5 LINE L1 1996 5302 -575 1 981 291 85 0 0 chr3 52012384 52012431 -107587352 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 1 981 21572 197 51 54 chr3 52012431 52014037 -107585746 + Lx5 LINE L1 5303 7047 -3 1 981 28 29 0 0 chr3 52014037 52014072 -107585711 + AT_rich Low_complexity Low_complexity 1 35 0 1 981 1038 171 56 14 chr3 52014164 52014377 -107585406 + URR1A DNA MER1_type 2 223 -3 1 981 549 80 0 0 chr3 52014415 52014490 -107585293 + (CA)n Simple_repeat Simple_repeat 1 75 0 1 981 24 0 0 0 chr3 52014871 52014895 -107584888 + GC_rich Low_complexity Low_complexity 1 24 0 1 981 182 174 22 0 chr3 52015302 52015348 -107584435 + GA-rich Low_complexity Low_complexity 3 49 0 2 981 225 212 16 15 chr3 52015498 52015573 -107584210 + MIR SINE MIR 72 142 -134 2 981 382 209 16 98 chr3 52015757 52015879 -107583904 - PB1D10 SINE Alu -5 112 1 2 981 244 380 98 13 chr3 52016141 52016365 -107583418 + MER20B DNA MER1_type 172 414 -369 2 981 271 242 187 13 chr3 52016465 52016620 -107583163 + MER20B DNA MER1_type 571 752 -31 2 981 235 301 14 0 chr3 52016626 52016699 -107583084 + ID4_ SINE ID 3 76 -7 2 981 301 255 9 54 chr3 52016958 52017070 -107582713 + PB1D10 SINE Alu 3 109 -8 2 981 1195 41 0 7 chr3 52017486 52017634 -107582149 + B1_Mus2 SINE Alu 1 147 0 2 981 333 0 0 0 chr3 52017634 52017671 -107582112 + (A)n Simple_repeat Simple_repeat 1 37 0 2 981 316 283 55 55 chr3 52018007 52018153 -107581630 - MLT1B LTR MaLR -4 386 241 2 981 268 274 38 12 chr3 52018191 52018300 -107581483 - MLT1B LTR MaLR -248 117 5 2 981 619 318 52 82 chr3 52019392 52019758 -107580025 - ORR1E LTR MaLR -2 357 3 2 981 274 270 40 141 chr3 52020074 52020251 -107579532 + RSINE1 SINE B4 3 161 -4 3 981 1047 65 71 0 chr3 52021103 52021257 -107578526 + B2_Mm1a SINE B2 2 166 -27 3 981 423 0 0 0 chr3 52021257 52021304 -107578479 + (TAGA)n Simple_repeat Simple_repeat 4 50 0 3 981 1168 75 0 0 chr3 52021312 52021459 -107578324 + B1_Mus1 SINE Alu 1 147 -1 3 981 404 252 17 17 chr3 52021679 52021796 -107577987 - MTEa LTR MaLR -54 325 209 3 981 719 182 49 0 chr3 52021811 52021954 -107577829 + B3 SINE B2 67 216 0 3 981 364 287 18 9 chr3 52021972 52022081 -107577702 - MLT1H1 LTR MaLR -2 553 444 3 981 363 270 0 60 chr3 52022084 52022218 -107577565 - MTEa LTR MaLR -253 126 1 3 981 226 225 47 59 chr3 52022434 52022519 -107577264 + MLT1H1 LTR MaLR 239 322 -233 3 981 407 339 62 6 chr3 52022542 52022720 -107577063 + MLT1H1 LTR MaLR 368 555 0 3 981 410 295 54 0 chr3 52022959 52023088 -107576695 + MER5A DNA MER1_type 34 169 -20 3 981 440 326 49 16 chr3 52023165 52023349 -107576434 - MER20 DNA MER1_type -23 196 7 3 981 742 321 40 32 chr3 52023968 52024315 -107575468 + RMER15-int LTR ERVL 2090 2439 -2560 4 981 329 287 49 5 chr3 52024385 52024522 -107575261 + B3A SINE B2 2 150 -66 4 981 222 37 0 0 chr3 52024532 52024559 -107575224 + (CA)n Simple_repeat Simple_repeat 1 27 0 4 981 1411 124 131 38 chr3 52024790 52025115 -107574668 - ORR1B1 LTR MaLR -2 392 46 4 981 530 284 104 59 chr3 52025083 52025529 -107574254 - RLTR12B LTR ERVK -184 344 1 4 981 801 111 0 0 chr3 52025529 52025654 -107574129 - ORR1B1 LTR MaLR -269 125 1 4 981 8881 157 50 129 chr3 52025654 52027786 -107571997 - ORR1B1-int LTR MaLR 0 1963 1 4 981 1850 189 56 19 chr3 52027786 52028163 -107571620 - ORR1B1 LTR MaLR 0 394 4 4 981 269 282 28 0 chr3 52028686 52028757 -107571026 + RMER15-int LTR ERVL 1554 1626 -3373 4 981 255 188 0 20 chr3 52029081 52029126 -107570657 - MTB_Mm LTR MaLR 0 394 351 4 981 1230 76 0 11 chr3 52029126 52029300 -107570483 + B2_Mm2 SINE B2 2 173 -22 4 981 717 97 0 0 chr3 52029312 52029415 -107570368 + (GAAAA)n Simple_repeat Simple_repeat 4 106 0 4 981 1992 160 34 0 chr3 52029419 52029776 -107570007 - MTB_Mm LTR MaLR -38 369 1 4 981 2184 303 67 67 chr3 52030067 52031216 -107568567 + RMER15-int LTR ERVL 1987 3124 -1875 4 981 209 217 0 21 chr3 52031336 52031383 -107568400 + (CCCTAA)n Simple_repeat Simple_repeat 1 46 0 5 981 332 250 30 10 chr3 52032075 52032176 -107567607 + (CATATA)n Simple_repeat Simple_repeat 6 108 0 5 981 561 173 13 6 chr3 52032182 52032339 -107567444 + (CA)n Simple_repeat Simple_repeat 2 159 0 5 981 1850 44 0 0 chr3 52032427 52032652 -107567131 - L1Md_A LINE L1 0 6582 6358 5 981 2943 164 50 4 chr3 52032820 52033358 -107566425 + RMER15 LTR ERVL 13 575 0 4 981 2612 111 120 0 chr3 52033862 52034286 -107565497 + IAPLTR2_Mm LTR ERVK 1 475 0 5 981 365 94 0 0 chr3 52034288 52034341 -107565442 + IAPEz-int LTR ERVK 3 55 -1932 5 981 1553 127 38 62 chr3 52034326 52034920 -107564863 + IAPEz-int LTR ERVK 10 429 -6052 5 981 3638 58 0 17 chr3 52034920 52035456 -107564327 + IAPEz-int LTR ERVK 211 662 -5819 5 122 2568 94 3 3 chr3 52035456 52035798 -107563985 + IAPEz-int LTR ERVK 1359 1700 -4781 5 982 6958 34 5 17 chr3 52035791 52036630 -107563153 + IAPEz-int LTR ERVK 5651 6479 -2 5 982 2564 108 142 0 chr3 52036632 52037048 -107562735 + IAPLTR2_Mm LTR ERVK 1 475 0 5 982 335 303 125 74 chr3 52037299 52037468 -107562315 - L1_Mur3 LINE L1 -3456 2687 2505 5 982 2067 157 8 37 chr3 52037468 52037846 -107561937 + ORR1B2 LTR MaLR 1 367 0 5 982 560 304 120 69 chr3 52037846 52038235 -107561548 - L1_Mur3 LINE L1 -3639 2504 2077 5 982 515 296 75 47 chr3 52038524 52038737 -107561046 + B4 SINE B4 2 220 -72 5 982 550 260 144 16 chr3 52038752 52039002 -107560781 + L1MA7 LINE L1 5981 6262 -29 5 982 2371 144 40 8 chr3 52039065 52039465 -107560318 + MTC LTR MaLR 1 413 -8 6 982 1341 187 67 188 chr3 52039583 52040183 -107559600 - RLTR11A LTR ERVK 0 528 2 6 982 804 311 27 27 chr3 52042040 52042087 -107557696 - MMERGLN-int LTR ERV1 -78 7700 7659 6 982 3204 46 10 5 chr3 52042087 52042481 -107557302 + MTA_Mm LTR MaLR 1 396 0 6 982 874 307 37 25 chr3 52042481 52042979 -107556804 - MMERGLN-int LTR ERV1 -120 7658 6909 6 982 297 225 49 24 chr3 52044211 52044293 -107555490 - MMERGLN-int LTR ERV1 -2008 5598 5515 6 982 2214 330 74 77 chr3 52044494 52047690 -107552093 - MMERGLN-int LTR ERV1 -2321 5235 1940 6 982 577 320 69 66 chr3 52047841 52048490 -107551293 - MMERGLN-int LTR ERV1 -5712 1844 1194 6 982 2028 187 133 92 chr3 52049887 52050487 -107549296 - RMER20B LTR ERVK -2 625 1 6 982 691 164 66 98 chr3 52050487 52050670 -107549113 + B2_Mm2 SINE B2 13 189 -6 6 982 1092 112 71 0 chr3 52051628 52051798 -107547985 - B2_Mm2 SINE B2 -12 183 2 6 982 3468 108 4 18 chr3 52052562 52053118 -107546665 + RLTR19B LTR ERVK 168 715 0 6 982 619 164 164 0 chr3 52053487 52053609 -107546174 + B1_Mur1 SINE Alu 1 142 -7 6 982 282 56 0 0 chr3 52053609 52053645 -107546138 + (TA)n Simple_repeat Simple_repeat 2 37 0 6 982 273 270 22 95 chr3 52054217 52054417 -107545366 - L1M3d LINE L1 -4643 1488 1313 7 982 523 108 54 8 chr3 52054613 52054743 -107545040 + G-rich Low_complexity Low_complexity 1 136 0 7 982 309 115 0 14 chr3 52054771 52054836 -107544947 + ORR1A4 LTR MaLR 1 61 -266 7 982 395 256 144 0 chr3 52054913 52055038 -107544745 - B1_Mur1 SINE Alu -6 143 1 7 982 911 125 27 40 chr3 52055053 52055203 -107544580 + B1_Mus1 SINE Alu 1 148 0 7 982 23 0 0 0 chr3 52055203 52055226 -107544557 + AT_rich Low_complexity Low_complexity 1 23 0 7 982 189 171 0 0 chr3 52055373 52055408 -107544375 + CT-rich Low_complexity Low_complexity 4 38 0 7 982 574 180 90 38 chr3 52055468 52055601 -107544182 + B1_Mur2 SINE Alu 2 141 -8 7 982 288 0 0 0 chr3 52055627 52055659 -107544124 + (TAA)n Simple_repeat Simple_repeat 2 33 0 7 982 758 182 0 4 chr3 52055849 52056077 -107543706 + CT-rich Low_complexity Low_complexity 1 226 0 7 982 919 161 0 11 chr3 52056104 52056286 -107543497 + CT-rich Low_complexity Low_complexity 1 180 0 7 982 806 238 85 30 chr3 52056286 52056485 -107543298 - B3 SINE B2 -1 215 6 8 982 194 0 39 0 chr3 52056489 52056515 -107543268 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 8 982 1831 125 22 117 chr3 52056587 52056805 -107542978 - RMER17C LTR ERVK 0 410 193 8 982 613 0 26 0 chr3 52056805 52056882 -107542901 + (GA)n Simple_repeat Simple_repeat 2 80 0 8 982 1831 125 22 117 chr3 52056882 52057116 -107542667 - RMER17C LTR ERVK -218 192 1 8 982 259 44 44 0 chr3 52057581 52057626 -107542157 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 8 982 267 197 24 84 chr3 52057628 52057711 -107542072 + B4A SINE B4 215 292 0 8 982 258 151 41 0 chr3 52057711 52057784 -107541999 + (CA)n Simple_repeat Simple_repeat 1 76 0 8 982 278 250 0 77 chr3 52057831 52057909 -107541874 + ID4 SINE ID 12 83 0 8 982 2046 154 72 8 chr3 52058503 52058877 -107540906 - RMER10B LTR ERVL 0 398 1 8 982 534 31 0 0 chr3 52058914 52058978 -107540805 + (TC)n Simple_repeat Simple_repeat 1 64 0 8 982 551 199 230 7 chr3 52058997 52059149 -107540634 - B4A SINE B4 -98 194 9 9 982 335 272 114 19 chr3 52059186 52059291 -107540492 + PB1D7 SINE Alu 2 116 -4 9 982 209 265 44 0 chr3 52059474 52059542 -107540241 + MIR SINE MIR 178 248 -14 9 982 747 259 93 49 chr3 52059716 52060014 -107539769 - MLT1B LTR MaLR -2 406 80 9 982 201 128 85 0 chr3 52060105 52060152 -107539631 + A-rich Low_complexity Low_complexity 3 53 0 9 982 1212 44 0 32 chr3 52060619 52060805 -107538978 + (TG)n Simple_repeat Simple_repeat 1 180 0 9 982 650 246 7 40 chr3 52060888 52060994 -107538789 + B1_Mur2 SINE Alu 3 109 -40 9 982 2296 115 16 0 chr3 52060994 52061316 -107538467 + ORR1A2 LTR MaLR 1 327 0 9 982 650 246 7 40 chr3 52061316 52061361 -107538422 + B1_Mur2 SINE Alu 110 149 0 9 982 258 32 0 0 chr3 52061654 52061685 -107538098 + (ATTG)n Simple_repeat Simple_repeat 1 31 0 9 982 360 0 0 0 chr3 52062413 52062453 -107537330 + (GA)n Simple_repeat Simple_repeat 1 40 0 9 982 23 0 0 0 chr3 52062764 52062787 -107536996 + AT_rich Low_complexity Low_complexity 1 23 0 1 982 389 304 85 37 chr3 52064080 52064326 -107535457 + RLTR12B LTR ERVK 269 526 -2 1 982 405 212 6 44 chr3 52064334 52064429 -107535354 + B1_Mus2 SINE Alu 10 100 -47 1 982 384 22 0 0 chr3 52066048 52066093 -107533690 + (GGA)n Simple_repeat Simple_repeat 3 47 0 1 982 1011 82 19 6 chr3 52066093 52066253 -107533530 + (GAAA)n Simple_repeat Simple_repeat 4 165 0 1 982 420 223 43 3 chr3 52066451 52066549 -107533234 - B3 SINE B2 -6 192 96 1 982 2007 158 49 54 chr3 52066727 52067136 -107532647 + MTB_Mm LTR MaLR 1 407 0 1 982 558 210 25 16 chr3 52067364 52067485 -107532298 + ID_B1 SINE B4 103 224 0 1 982 346 239 269 6 chr3 52067692 52067852 -107531931 - B3 SINE B2 -14 202 1 1 982 399 21 0 0 chr3 52068672 52068720 -107531063 + (CA)n Simple_repeat Simple_repeat 1 48 0 1 982 269 222 11 80 chr3 52069086 52069174 -107530609 - ID4_ SINE ID 0 83 2 1 982 223 239 147 15 chr3 52069215 52069283 -107530500 - ID4_ SINE ID -5 78 2 1 982 373 304 31 23 chr3 52069283 52069411 -107530372 - B1F2 SINE Alu 0 149 21 1 982 751 178 7 27 chr3 52069432 52069582 -107530201 - B1_Mur1 SINE Alu -2 147 1 1 982 284 259 222 0 chr3 52069678 52069759 -107530024 - ID_B1 SINE B4 -12 212 114 1 982 35 0 0 0 chr3 52072259 52072294 -107527489 + GC_rich Low_complexity Low_complexity 1 35 0 1 982 215 264 0 14 chr3 52073066 52073139 -107526644 + (CCG)n Simple_repeat Simple_repeat 3 74 0 1 982 344 241 112 22 chr3 52075868 52075957 -107523826 + ID_B1 SINE B4 8 104 -120 1 982 231 320 41 0 chr3 52076055 52076152 -107523631 + ID_B1 SINE B4 122 222 -2 1 982 259 292 298 17 chr3 52076326 52076507 -107523276 - B4A SINE B4 -60 232 1 1 982 189 107 0 0 chr3 52076710 52076738 -107523045 + (T)n Simple_repeat Simple_repeat 1 28 0 1 982 528 249 179 34 chr3 52076809 52076988 -107522795 + ID_B1 SINE B4 20 224 0 1 982 817 233 56 0 chr3 52077256 52077436 -107522347 - B3A SINE B2 -7 191 2 1 982 1037 289 97 13 chr3 52077793 52078165 -107521618 - Lx8 LINE L1 -26 7447 7045 1 982 2600 284 98 39 chr3 52078194 52079480 -107520303 - Lx8 LINE L1 -605 6868 5487 1 982 669 228 27 20 chr3 52079480 52079628 -107520155 - B1_Mur1 SINE Alu 0 149 1 1 982 260 324 43 98 chr3 52079628 52079671 -107520112 - MT2B LTR ERVL -443 158 125 1 982 2068 211 120 91 chr3 52079677 52080354 -107519429 - Lx8 LINE L1 -432 5448 4763 1 982 288 0 0 0 chr3 52080354 52080386 -107519397 + (TCTG)n Simple_repeat Simple_repeat 2 33 0 1 982 2068 211 120 91 chr3 52080386 52080651 -107519132 - Lx8 LINE L1 -1118 4762 4481 1 982 274 241 51 0 chr3 52080674 52080753 -107519030 - Lx8 LINE L1 -2444 3436 3354 1 982 247 241 238 2 chr3 52080738 52080890 -107518893 - L1_Mur1 LINE L1 -2585 3301 3121 1 982 268 235 15 0 chr3 52080910 52080978 -107518805 + MTD LTR MaLR 247 315 -104 1 982 311 265 149 34 chr3 52081203 52081472 -107518311 - Lx8 LINE L1 -2931 2949 2650 1 982 1119 226 92 20 chr3 52081536 52081829 -107517954 + MTD LTR MaLR 2 315 -104 1 982 623 274 82 61 chr3 52081837 52082148 -107517635 - ORR1E LTR MaLR 0 370 56 1 982 273 57 0 0 chr3 52082183 52082218 -107517565 + (CAGA)n Simple_repeat Simple_repeat 2 36 0 1 982 532 180 85 158 chr3 52082221 52082386 -107517397 - ORR1C2 LTR MaLR -231 153 1 1 982 1912 280 116 42 chr3 52082435 52082526 -107517257 - Lx8 LINE L1 -3224 2656 2558 1 982 216 0 0 0 chr3 52082526 52082550 -107517233 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 1 982 871 164 144 27 chr3 52082559 52082747 -107517036 - B3 SINE B2 -5 211 2 1 982 1912 284 121 43 chr3 52082747 52083932 -107515851 - Lx8 LINE L1 -3282 2565 1271 1 982 189 0 0 0 chr3 52084140 52084161 -107515622 + (T)n Simple_repeat Simple_repeat 1 21 0 1 982 617 154 106 0 chr3 52084175 52084298 -107515485 - B1_Mur4 SINE Alu 0 150 15 1 982 250 264 87 65 chr3 52084181 52084319 -107515464 - B4A SINE B4 -71 221 81 1 982 202 274 0 19 chr3 52084333 52084385 -107515398 + CT-rich Low_complexity Low_complexity 1 51 0 1 982 189 0 0 0 chr3 52084386 52084407 -107515376 + (TTTTA)n Simple_repeat Simple_repeat 2 22 0 1 982 347 320 16 8 chr3 52084407 52084530 -107515253 - ID_B1 SINE B4 -3 221 98 1 982 240 35 0 0 chr3 52084948 52084977 -107514806 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 1 982 277 237 65 93 chr3 52084977 52085084 -107514699 - PB1D10 SINE Alu -10 107 4 1 982 1162 49 0 7 chr3 52085314 52085458 -107514325 - B1_Mus1 SINE Alu -5 143 1 1 982 194 91 30 0 chr3 52086130 52086163 -107513620 + (GGGGA)n Simple_repeat Simple_repeat 1 34 0 1 982 1126 81 56 6 chr3 52086679 52086841 -107512942 - B2_Mm2 SINE B2 -23 172 3 1 982 855 226 72 0 chr3 52086853 52087048 -107512735 - B3 SINE B2 0 216 8 1 982 1302 91 11 0 chr3 52087833 52088009 -107511774 + B2_Mm1t SINE B2 2 179 -14 1 982 1182 56 0 0 chr3 52088029 52088173 -107511610 + B1_Mus1 SINE Alu 1 144 -4 1 982 203 0 0 36 chr3 52088178 52088206 -107511577 + (TAAAA)n Simple_repeat Simple_repeat 4 30 0 1 982 333 0 0 0 chr3 52088431 52088468 -107511315 + (TG)n Simple_repeat Simple_repeat 2 38 0 1 982 260 246 48 103 chr3 52088580 52088696 -107511087 - B1_Mur1 SINE Alu 0 149 1 1 982 320 91 0 0 chr3 52089460 52089504 -107510279 - tRNA-Gly-GGA tRNA tRNA -31 44 1 1 982 333 230 42 113 chr3 52090380 52090522 -107509261 - MT2B LTR ERVL -274 327 196 1 982 770 98 0 9 chr3 52090410 52090523 -107509260 - B1_Mur3 SINE Alu 0 149 38 1 982 275 260 269 0 chr3 52090530 52090634 -107509149 - ID_B1 SINE B4 0 224 93 1 982 537 226 163 6 chr3 52090802 52090980 -107508803 - B3 SINE B2 -10 206 1 1 982 286 250 31 0 chr3 52091985 52092049 -107507734 - PB1D10 SINE Alu -41 76 11 1 982 258 246 27 80 chr3 52092049 52092060 -107507723 - MT2B LTR ERVL -367 234 164 1 982 186 43 0 0 chr3 52092498 52092521 -107507262 + (CAG)n Simple_repeat Simple_repeat 2 24 0 1 982 421 233 19 10 chr3 52092822 52092926 -107506857 - B1_Mur1 SINE Alu -8 141 37 1 982 436 255 20 20 chr3 52093027 52093127 -107506656 + PB1 SINE Alu 19 118 -9 1 982 339 186 14 54 chr3 52093143 52093217 -107506566 + ID4_ SINE ID 1 71 -12 1 982 261 286 24 12 chr3 52093384 52093469 -107506314 - PB1D7 SINE Alu -13 107 22 1 982 254 339 8 16 chr3 52093532 52093658 -107506125 - BC1_Mm scRNA scRNA -25 127 3 1 982 1114 75 0 20 chr3 52094481 52094631 -107505152 - B1_Mus1 SINE Alu 0 148 2 1 982 664 153 129 8 chr3 52094677 52094809 -107504974 - B1_Mur4 SINE Alu -1 149 2 1 982 697 169 14 103 chr3 52094812 52094957 -107504826 - B1_Mur1 SINE Alu -2 147 16 1 982 304 226 7 212 chr3 52094837 52094983 -107504800 - MT2B LTR ERVL -325 276 161 1 982 254 296 78 61 chr3 52095432 52095547 -107504236 + MER20 DNA MER1_type 63 179 -40 1 982 261 265 63 51 chr3 52096011 52096149 -107503634 - B1F SINE Alu 0 149 15 1 982 234 323 15 0 chr3 52096101 52096166 -107503617 - B4A SINE B4 -144 148 83 1 982 398 236 146 28 chr3 52096817 52096961 -107502822 - RSINE1 SINE B4 -2 163 3 1 982 299 264 110 116 chr3 52097927 52098073 -107501710 + B4 SINE B4 78 222 -70 1 982 516 211 19 0 chr3 52097973 52098077 -107501706 + B1_Mur1 SINE Alu 42 147 -2 1 982 383 263 169 34 chr3 52098100 52098277 -107501506 - MTE2b LTR MaLR -65 314 114 1 982 385 301 21 50 chr3 52098333 52098473 -107501310 - B3A SINE B2 -48 150 15 1 982 237 65 0 0 chr3 52098613 52098644 -107501139 + (TG)n Simple_repeat Simple_repeat 2 32 0 1 982 309 48 15 61 chr3 52099121 52099187 -107500596 + (TTTTTG)n Simple_repeat Simple_repeat 4 66 0 1 982 311 264 79 57 chr3 52099275 52099452 -107500331 - L1MB3 LINE L1 0 6183 6003 1 982 207 69 0 0 chr3 52101460 52101489 -107498294 + (TG)n Simple_repeat Simple_repeat 1 29 0 1 982 249 57 0 0 chr3 52105016 52105051 -107494732 + (CTGTG)n Simple_repeat Simple_repeat 1 35 0 1 982 364 297 97 39 chr3 52107617 52107771 -107492012 - RSINE1 SINE B4 0 165 3 1 982 644 228 192 0 chr3 52107854 52108021 -107491762 - B3 SINE B2 -10 206 8 1 982 276 149 0 0 chr3 52108156 52108203 -107491580 + (CTG)n Simple_repeat Simple_repeat 2 48 0 1 982 1251 157 194 52 chr3 52108507 52108817 -107490966 - RMER1B Other Other -7 1059 706 1 982 296 287 18 44 chr3 52108821 52108934 -107490849 + B3A SINE B2 85 194 -4 1 982 240 298 120 8 chr3 52110118 52110243 -107489540 - B1F1 SINE Alu -10 139 1 1 982 446 0 19 0 chr3 52111686 52111740 -107488043 + (TG)n Simple_repeat Simple_repeat 1 55 0 1 982 536 209 78 39 chr3 52112528 52112682 -107487101 - B3 SINE B2 0 216 57 1 982 357 211 205 26 chr3 52113557 52113674 -107486109 - B1F2 SINE Alu 0 149 12 1 982 1122 198 232 31 chr3 52113707 52114056 -107485727 - MTC LTR MaLR 0 421 3 1 982 371 245 208 0 chr3 52114166 52114272 -107485511 + B3A SINE B2 1 128 -70 1 982 364 140 0 0 chr3 52114533 52114590 -107485193 - PB1D9 SINE Alu -58 62 6 1 982 323 243 54 0 chr3 52114535 52114609 -107485174 - ID_B1 SINE B4 -83 141 64 1 982 857 96 229 0 chr3 52114699 52114856 -107484927 + B2_Mm1t SINE B2 1 193 0 1 982 939 41 0 0 chr3 52114858 52114981 -107484802 + B1_Mus2 SINE Alu 1 123 -24 1 982 542 259 76 0 chr3 52114984 52115142 -107484641 + B3 SINE B2 40 209 -7 1 982 22 0 0 0 chr3 52115145 52115167 -107484616 + AT_rich Low_complexity Low_complexity 1 22 0 1 982 258 32 0 0 chr3 52116045 52116076 -107483707 + (TG)n Simple_repeat Simple_repeat 1 31 0 1 982 319 204 78 22 chr3 52116372 52116462 -107483321 - PB1D10 SINE Alu -22 95 1 1 982 518 198 0 0 chr3 52116969 52117065 -107482718 - B3 SINE B2 -5 211 116 1 982 315 0 0 0 chr3 52117123 52117158 -107482625 + (TG)n Simple_repeat Simple_repeat 1 35 0 2 982 387 323 8 39 chr3 52117192 52117321 -107482462 - RSINE1 SINE B4 -39 126 2 2 982 750 256 10 53 chr3 52117346 52117552 -107482231 + ID_B1 SINE B4 2 198 -26 2 982 253 379 32 0 chr3 52117441 52117565 -107482218 + B1_Mur3 SINE Alu 7 134 -15 2 982 405 252 37 9 chr3 52117837 52117945 -107481838 - PB1D7 SINE Alu -8 112 2 2 982 249 57 0 0 chr3 52118072 52118107 -107481676 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 2 982 1123 52 0 0 chr3 52118107 52118243 -107481540 - B1_Mus1 SINE Alu -11 137 2 2 982 262 315 25 75 chr3 52119945 52120093 -107479690 + RSINE1 SINE B4 3 143 -22 2 982 279 0 0 0 chr3 52120093 52120124 -107479659 + (TG)n Simple_repeat Simple_repeat 1 31 0 2 982 262 315 25 75 chr3 52120124 52120136 -107479647 + RSINE1 SINE B4 144 155 -10 2 982 339 230 27 0 chr3 52120208 52120282 -107479501 + B1_Mus1 SINE Alu 6 81 -67 2 982 213 281 17 17 chr3 52120363 52120421 -107479362 - B1F SINE Alu -90 59 2 2 982 359 21 0 20 chr3 52120818 52120867 -107478916 + (TTTG)n Simple_repeat Simple_repeat 1 48 0 2 982 632 211 7 22 chr3 52120867 52121003 -107478780 - B1_Mur1 SINE Alu -13 136 3 2 982 494 237 23 15 chr3 52122051 52122184 -107477599 + MTE2a LTR MaLR 245 378 -1 2 982 455 228 97 8 chr3 52122699 52122823 -107476960 - B1_Mus2 SINE Alu -12 135 1 2 982 440 338 53 7 chr3 52122880 52123032 -107476751 - RSINE1 SINE B4 -4 161 3 2 982 180 111 0 0 chr3 52123083 52123110 -107476673 + (TAGA)n Simple_repeat Simple_repeat 4 30 0 2 982 294 50 0 0 chr3 52123265 52123305 -107476478 + (GA)n Simple_repeat Simple_repeat 1 40 0 2 982 432 37 0 0 chr3 52123670 52123724 -107476059 + (TC)n Simple_repeat Simple_repeat 1 54 0 2 982 231 256 240 0 chr3 52123724 52123853 -107475930 - RSINE1 SINE B4 -3 162 3 2 982 228 111 0 0 chr3 52125136 52125172 -107474611 + (CA)n Simple_repeat Simple_repeat 2 37 0 2 982 246 323 22 80 chr3 52126645 52126783 -107473000 - RSINE1 SINE B4 -33 132 3 2 982 230 237 173 69 chr3 52127651 52127882 -107471901 - L1MA5A LINE L1 -2 6295 6041 2 982 243 253 61 37 chr3 52127992 52128074 -107471709 - L1MA5A LINE L1 -428 5872 5789 2 982 1304 118 16 0 chr3 52128179 52128366 -107471417 - B2_Mm2 SINE B2 -5 190 1 2 982 974 253 108 69 chr3 52128766 52129133 -107470650 - Lx7 LINE L1 -177 7296 6911 2 982 594 204 21 28 chr3 52129133 52129274 -107470509 + B1_Mur1 SINE Alu 1 140 -9 2 982 974 238 111 69 chr3 52129274 52129325 -107470458 - Lx7 LINE L1 -786 6910 6859 2 982 234 0 0 0 chr3 52129500 52129526 -107470257 + (TAAA)n Simple_repeat Simple_repeat 4 29 0 2 982 21 0 0 0 chr3 52134179 52134200 -107465583 + AT_rich Low_complexity Low_complexity 1 21 0 2 982 387 0 0 0 chr3 52136038 52136081 -107463702 + (TTG)n Simple_repeat Simple_repeat 2 44 0 2 982 22 0 0 0 chr3 52136837 52136859 -107462924 + AT_rich Low_complexity Low_complexity 1 22 0 2 982 212 191 21 0 chr3 52137384 52137431 -107462352 - RSINE1 SINE B4 -35 130 83 2 982 239 296 43 0 chr3 52137606 52137721 -107462062 - PB1D7 SINE Alu 0 120 1 2 982 450 0 0 0 chr3 52138602 52138652 -107461131 + (TG)n Simple_repeat Simple_repeat 2 51 0 2 982 431 225 110 18 chr3 52139315 52139478 -107460305 + B2_Mm2 SINE B2 2 179 -16 2 982 339 318 123 39 chr3 52140028 52140231 -107459552 - B4A SINE B4 -71 221 2 2 982 207 69 0 0 chr3 52140591 52140620 -107459163 + (TG)n Simple_repeat Simple_repeat 2 30 0 2 982 1115 72 0 0 chr3 52140644 52140783 -107459000 - B1_Mus1 SINE Alu -9 139 1 2 982 189 74 0 0 chr3 52140949 52140976 -107458807 + (CA)n Simple_repeat Simple_repeat 2 28 0 2 982 356 181 72 0 chr3 52141001 52141084 -107458699 - B3 SINE B2 -127 89 1 2 982 357 75 0 0 chr3 52141232 52141285 -107458498 + (CA)n Simple_repeat Simple_repeat 1 53 0 2 982 292 225 14 40 chr3 52148770 52148844 -107450939 + RSINE1 SINE B4 59 130 -35 2 982 218 0 94 0 chr3 52150396 52150428 -107449355 + (TAAAAA)n Simple_repeat Simple_repeat 2 36 0 2 982 225 0 0 0 chr3 52151010 52151035 -107448748 + (A)n Simple_repeat Simple_repeat 1 25 0 2 982 995 174 63 41 chr3 52154198 52154419 -107445364 + URR1A DNA MER1_type 1 226 0 2 982 574 252 0 0 chr3 52154425 52154548 -107445235 + B1_Mur2 SINE Alu 1 123 -26 2 982 313 284 74 0 chr3 52156183 52156278 -107443505 - PB1D10 SINE Alu -9 108 7 2 982 1168 68 0 7 chr3 52156870 52157019 -107442764 - B1_Mus1 SINE Alu 0 148 1 2 982 429 219 0 0 chr3 52157586 52157668 -107442115 - RSINE1 SINE B4 -72 93 12 2 982 1059 130 0 0 chr3 52158837 52159068 -107440715 + (TG)n Simple_repeat Simple_repeat 1 231 0 2 982 23 0 0 0 chr3 52159254 52159277 -107440506 + AT_rich Low_complexity Low_complexity 1 23 0 2 982 225 326 105 39 chr3 52160365 52160518 -107439265 + RSINE1 SINE B4 2 164 -1 2 982 255 152 0 0 chr3 52160987 52161033 -107438750 + (TCCA)n Simple_repeat Simple_repeat 1 46 0 2 982 304 200 64 96 chr3 52161191 52161285 -107438498 + B1F2 SINE Alu 4 94 -55 2 982 245 263 52 21 chr3 52161958 52162055 -107437728 - Tigger15a DNA TcMar -180 535 436 2 982 314 313 0 0 chr3 52162087 52162170 -107437613 + CT-rich Low_complexity Low_complexity 2 84 0 2 982 320 189 13 13 chr3 52162337 52162412 -107437371 + tRNA-Ala-GCY_ tRNA tRNA 1 75 0 2 982 396 0 0 0 chr3 52162413 52162457 -107437326 + (CA)n Simple_repeat Simple_repeat 1 44 0 2 982 252 191 46 35 chr3 52163265 52163352 -107436431 - L1M LINE L1 -800 5379 5292 2 982 947 101 22 7 chr3 52163366 52163505 -107436278 - B1_Mus1 SINE Alu -3 145 5 2 982 2893 95 14 2 chr3 52163506 52163926 -107435857 - MT2C_Mm LTR ERVL -50 425 1 2 982 432 291 0 0 chr3 52164041 52164158 -107435625 - PB1D10 SINE Alu 0 117 1 2 982 52 30 0 0 chr3 52165610 52165676 -107434107 + AT_rich Low_complexity Low_complexity 1 66 0 2 982 387 0 0 0 chr3 52165676 52165719 -107434064 + (ATTG)n Simple_repeat Simple_repeat 1 43 0 2 982 343 333 13 20 chr3 52165719 52165869 -107433914 - RSINE1 SINE B4 -14 151 3 2 122 3145 47 39 3 chr3 52166309 52166691 -107433092 + MTA_Mm LTR MaLR 1 396 0 2 983 1077 66 0 0 chr3 52166704 52166840 -107432943 + B1_Mm SINE Alu 3 138 -9 2 983 394 302 40 0 chr3 52166859 52166985 -107432798 + B1F1 SINE Alu 19 149 0 2 983 1485 212 127 6 chr3 52167596 52167942 -107431841 - RLTR24 LTR ERV1 0 529 142 2 983 989 233 44 101 chr3 52167944 52168570 -107431213 - RLTR42-int LTR ERVK -3278 2244 1870 2 983 1317 237 7 0 chr3 52168789 52169059 -107430724 - RLTR14 LTR ERV1 -64 318 47 2 983 270 182 25 25 chr3 52169087 52169166 -107430617 - RLTR42-int LTR ERVK -5160 977 899 2 983 182 0 107 0 chr3 52169297 52169325 -107430458 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 2 983 513 204 28 0 chr3 52169376 52169484 -107430299 - RLTR42-int LTR ERVK -4307 1215 1105 2 983 3144 52 33 13 chr3 52169627 52170017 -107429766 - MTB LTR MaLR 0 400 3 2 983 2246 116 3 58 chr3 52170098 52170446 -107429337 + ORR1A4 LTR MaLR 1 329 0 2 983 881 58 0 40 chr3 52170887 52171013 -107428770 - B1_Mus2 SINE Alu -1 146 26 2 983 243 73 0 128 chr3 52170999 52171046 -107428737 + ORR1A4-int LTR MaLR 600 640 -1323 2 983 676 237 108 21 chr3 52171092 52171286 -107428497 + MT2B LTR ERVL 14 224 -377 2 983 3261 165 90 27 chr3 52171282 52172188 -107427595 + ORR1A4-int LTR MaLR 328 1378 -585 2 983 1811 161 21 27 chr3 52172188 52172519 -107427264 + ORR1A4 LTR MaLR 1 329 0 2 983 268 181 35 172 chr3 52172519 52172540 -107427243 + ORR1B1 LTR MaLR 71 84 -310 2 983 436 286 19 0 chr3 52172540 52172645 -107427138 + B1F SINE Alu 1 107 -42 2 983 331 393 7 0 chr3 52173936 52174076 -107425707 + MIRb SINE MIR 52 192 -76 2 983 779 200 182 6 chr3 52174593 52174769 -107425014 + B3 SINE B2 1 207 -9 2 983 796 207 7 0 chr3 52174862 52175002 -107424781 + B1_Mur1 SINE Alu 2 142 -7 2 983 39 60 0 0 chr3 52175161 52175228 -107424555 + AT_rich Low_complexity Low_complexity 1 67 0 2 983 851 199 87 53 chr3 52175234 52175277 -107424506 - B3 SINE B2 -2 214 183 2 983 294 29 0 0 chr3 52175277 52175312 -107424471 + (TATG)n Simple_repeat Simple_repeat 4 38 0 2 983 851 199 87 53 chr3 52175312 52175475 -107424308 - B3 SINE B2 -34 182 2 2 983 279 0 0 0 chr3 52175619 52175650 -107424133 + (TCTG)n Simple_repeat Simple_repeat 2 32 0 2 983 305 276 75 82 chr3 52175657 52175791 -107423992 - RSINE1 SINE B4 -29 136 4 2 983 610 205 56 24 chr3 52176451 52176633 -107423150 + B3A SINE B2 2 185 -10 2 983 312 296 61 0 chr3 52176636 52176734 -107423049 - L1M5 LINE L1 -1320 4826 4723 2 983 324 250 0 50 chr3 52176860 52176961 -107422822 - L1MC LINE L1 -2337 3809 3714 2 983 624 108 48 19 chr3 52176982 52177086 -107422697 - B1F2 SINE Alu -3 146 40 2 983 271 155 32 116 chr3 52177003 52177098 -107422685 - RLTR25B LTR ERVK -514 514 428 2 983 283 307 50 0 chr3 52177206 52177307 -107422476 - PB1 SINE Alu 0 127 22 2 983 292 255 62 31 chr3 52177322 52177419 -107422364 - PB1D10 SINE Alu -16 101 2 2 983 650 278 27 18 chr3 52177420 52177640 -107422143 - L1M5 LINE L1 -2449 3697 3476 2 983 863 171 0 7 chr3 52177641 52177788 -107421995 - B1_Mus2 SINE Alu -1 146 1 2 983 415 279 44 18 chr3 52177914 52178027 -107421756 - PB1D7 SINE Alu 0 120 5 2 983 249 272 98 0 chr3 52178226 52178318 -107421465 - L1MA8 LINE L1 0 6291 6191 2 983 332 195 25 25 chr3 52178407 52178486 -107421297 - Charlie2b DNA MER1_type -301 2481 2403 2 983 335 328 72 22 chr3 52179043 52179224 -107420559 - L2a LINE L2 -304 3122 2933 2 983 198 0 0 0 chr3 52179338 52179360 -107420423 + (TCTG)n Simple_repeat Simple_repeat 2 23 0 2 983 1056 65 0 0 chr3 52179361 52179515 -107420268 + (TCTA)n Simple_repeat Simple_repeat 1 154 0 2 983 3405 124 14 47 chr3 52179520 52180070 -107419713 - Lx4A LINE L1 -3 7055 6524 3 983 833 294 22 30 chr3 52180085 52180355 -107419428 - Lx8 LINE L1 -206 7267 7000 3 983 717 231 101 20 chr3 52180371 52180570 -107419213 - B3 SINE B2 0 216 2 3 983 255 292 30 30 chr3 52180573 52180672 -107419111 - Lx8 LINE L1 -457 7016 6918 3 983 22 0 0 0 chr3 52181003 52181025 -107418758 + AT_rich Low_complexity Low_complexity 1 22 0 3 983 3468 34 7 2 chr3 52181576 52181986 -107417797 + L1Md_F3 LINE L1 6173 6584 0 3 983 459 0 0 0 chr3 52183393 52183444 -107416339 + (TG)n Simple_repeat Simple_repeat 1 51 0 3 983 694 262 124 70 chr3 52183463 52183510 -107416273 - B4A SINE B4 -19 273 214 3 983 300 53 0 0 chr3 52183510 52183548 -107416235 + (ATTG)n Simple_repeat Simple_repeat 3 40 0 3 983 694 262 124 70 chr3 52183548 52183758 -107416025 - B4A SINE B4 -79 213 3 3 983 243 276 0 0 chr3 52184102 52184160 -107415623 + (GGCTG)n Simple_repeat Simple_repeat 5 62 0 3 983 596 181 9 54 chr3 52184422 52184513 -107415270 + PB1D9 SINE Alu 7 98 -22 3 983 2926 38 3 11 chr3 52184513 52184862 -107414921 - ORR1A1 LTR MaLR 0 346 1 3 983 596 181 9 54 chr3 52184862 52184881 -107414902 + PB1D9 SINE Alu 99 112 -8 3 983 324 292 57 0 chr3 52184897 52185003 -107414780 + Arthur1 DNA Tip100 583 694 -3253 3 983 357 208 153 32 chr3 52185217 52185341 -107414442 + RCHARR1 DNA MER1_type 4 142 -832 3 983 785 173 8 0 chr3 52185361 52185497 -107414286 - B1_Mus2 SINE Alu -11 136 1 3 983 514 293 192 15 chr3 52185497 52185756 -107414027 + RCHARR1 DNA MER1_type 138 442 -532 3 983 811 152 109 6 chr3 52185761 52185926 -107413857 + RMER1B Other Other 874 1055 -11 3 983 346 212 35 0 chr3 52186013 52186098 -107413685 + RCHARR1 DNA MER1_type 751 838 -136 3 983 306 295 43 95 chr3 52186126 52186242 -107413541 - PB1D10 SINE Alu -5 112 3 3 983 441 279 86 25 chr3 52186242 52186367 -107413416 + RCHARR1 DNA MER1_type 839 973 -1 3 983 1150 68 0 7 chr3 52186426 52186574 -107413209 + B1_Mus2 SINE Alu 1 147 0 3 983 207 0 0 0 chr3 52186589 52186612 -107413171 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 3 983 1087 126 170 16 chr3 52186783 52186977 -107412806 - URR1A DNA MER1_type 0 226 3 3 983 347 280 13 0 chr3 52187014 52187089 -107412694 + RSINE1 SINE B4 86 161 -4 3 983 191 88 29 0 chr3 52187100 52187134 -107412649 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 3 983 340 302 75 50 chr3 52188954 52189150 -107410633 - HAL1-2a_MD LINE L1 -513 2511 2344 3 983 276 341 0 0 chr3 52189298 52189380 -107410403 - MIRm SINE MIR -128 148 67 3 983 1206 35 7 0 chr3 52189413 52189556 -107410227 - B1_Mus2 SINE Alu 0 147 4 3 983 476 281 26 0 chr3 52190428 52190542 -107409241 - PB1D10 SINE Alu 0 117 1 3 983 199 0 0 61 chr3 52190671 52190704 -107409079 + (TTTTG)n Simple_repeat Simple_repeat 1 31 0 3 983 180 111 0 0 chr3 52190824 52190851 -107408932 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3 983 413 19 0 18 chr3 52190958 52191013 -107408770 + (TG)n Simple_repeat Simple_repeat 2 55 0 3 983 307 77 0 0 chr3 52191046 52191085 -107408698 + PB1D9 SINE Alu 1 39 -81 3 983 221 30 61 0 chr3 52191095 52191128 -107408655 + (CAAA)n Simple_repeat Simple_repeat 1 35 0 3 983 199 338 186 21 chr3 52191708 52191853 -107407930 + MIRb SINE MIR 3 171 -97 3 983 396 274 62 44 chr3 52192023 52192183 -107407600 + RSINE1 SINE B4 3 165 0 3 983 770 126 125 8 chr3 52192291 52192419 -107407364 - B1_Mus2 SINE Alu -2 145 3 3 983 367 196 83 64 chr3 52192325 52192434 -107407349 - MT2B LTR ERVL -337 264 154 3 983 380 130 14 0 chr3 52192437 52192506 -107407277 + (TCC)n Simple_repeat Simple_repeat 3 72 0 3 983 578 289 166 11 chr3 52192934 52193205 -107406578 - MER2 DNA MER2_type -5 340 28 3 983 381 43 0 0 chr3 52193410 52193457 -107406326 + (TC)n Simple_repeat Simple_repeat 2 48 0 3 983 243 239 22 0 chr3 52193473 52193519 -107406264 - ID4_ SINE ID -36 47 1 3 983 856 286 144 47 chr3 52193544 52194163 -107405620 - Lx9 LINE L1 -7 7637 6959 3 983 282 276 41 31 chr3 52194220 52194288 -107405495 - B1F2 SINE Alu 0 149 81 3 983 998 292 48 62 chr3 52194288 52194646 -107405137 + ORR1E LTR MaLR 1 353 -6 3 983 1352 174 126 43 chr3 52194646 52194995 -107404788 - ORR1C2 LTR MaLR -3 381 4 3 983 258 224 16 17 chr3 52195037 52195113 -107404670 - PB1D10 SINE Alu -70 79 1 3 983 805 245 44 0 chr3 52195884 52196088 -107403695 - B3 SINE B2 -3 213 1 3 983 584 27 14 0 chr3 52196759 52196833 -107402950 + (GAAA)n Simple_repeat Simple_repeat 4 78 0 3 983 971 147 133 66 chr3 52196983 52197194 -107402589 - URR1B DNA MER1_type 0 225 1 3 983 950 167 97 56 chr3 52198008 52198224 -107401559 + URR1A DNA MER1_type 1 225 -1 3 983 374 283 82 38 chr3 52198270 52198428 -107401355 + MIR SINE MIR 59 223 -39 3 983 2470 135 73 10 chr3 52199219 52199615 -107400168 - MTC LTR MaLR 0 421 1 3 983 710 203 104 118 chr3 52200782 52200994 -107398789 - ID_B1 SINE B4 -1 223 15 3 983 2982 100 26 7 chr3 52202765 52203187 -107396596 + RLTR23 LTR ERV1 1 430 0 3 983 315 330 96 32 chr3 52203876 52204095 -107395688 + L2b LINE L2 3047 3279 -96 3 983 189 0 0 0 chr3 52204640 52204661 -107395122 + (T)n Simple_repeat Simple_repeat 1 21 0 3 983 182 225 25 0 chr3 52205082 52205122 -107394661 - MIRc SINE MIR -105 163 123 3 983 661 182 43 21 chr3 52206156 52206296 -107393487 + B1_Mur2 SINE Alu 1 143 -6 3 983 234 0 0 0 chr3 52206297 52206323 -107393460 + (TAGA)n Simple_repeat Simple_repeat 2 27 0 3 983 304 170 0 19 chr3 52206340 52206394 -107393389 + B1F1 SINE Alu 91 143 -6 3 983 531 69 0 0 chr3 52206395 52206467 -107393316 + (TAGA)n Simple_repeat Simple_repeat 2 73 0 3 983 292 261 161 40 chr3 52206811 52206935 -107392848 - RLTR14 LTR ERV1 -19 363 225 3 983 553 243 0 0 chr3 52207595 52207702 -107392081 - B3 SINE B2 -109 107 1 3 983 51 17 0 0 chr3 52207729 52207787 -107391996 + AT_rich Low_complexity Low_complexity 1 58 0 3 983 818 262 5 27 chr3 52207788 52207976 -107391807 - B3 SINE B2 -6 210 27 3 983 180 0 0 0 chr3 52208000 52208020 -107391763 + (TA)n Simple_repeat Simple_repeat 2 21 0 3 983 1021 83 7 34 chr3 52208022 52208171 -107391612 - B2_Mm2 SINE B2 -50 145 1 3 983 1257 41 0 0 chr3 52209327 52209474 -107390309 - B1_Mm SINE Alu 0 147 1 3 983 360 273 11 53 chr3 52209545 52209702 -107390081 - Lx8 LINE L1 -1548 5925 5745 3 983 814 146 58 0 chr3 52209730 52209867 -107389916 - B1_Mur3 SINE Alu -2 147 3 3 983 274 257 214 34 chr3 52209906 52210023 -107389760 - ID_B1 SINE B4 -7 217 80 3 983 1184 68 0 0 chr3 52210265 52210413 -107389370 + B1_Mus1 SINE Alu 1 148 0 3 983 180 0 0 0 chr3 52210413 52210433 -107389350 + (A)n Simple_repeat Simple_repeat 1 20 0 3 983 377 299 9 0 chr3 52211175 52211282 -107388501 + MIRb SINE MIR 40 147 -121 3 983 250 258 14 43 chr3 52211861 52211930 -107387853 - L2 LINE L2 -591 2828 2762 3 983 263 339 182 22 chr3 52211944 52212312 -107387471 - L2 LINE L2 -808 2611 2185 3 983 1360 228 101 6 chr3 52212521 52212878 -107386905 + MER31A LTR ERV1 1 391 -94 3 983 216 0 0 0 chr3 52213179 52213203 -107386580 + (CA)n Simple_repeat Simple_repeat 1 24 0 3 983 476 146 0 11 chr3 52213241 52213331 -107386452 + (TCTA)n Simple_repeat Simple_repeat 2 90 0 3 983 207 309 173 0 chr3 52214178 52214259 -107385524 + MIR SINE MIR 85 179 -83 3 983 242 266 107 60 chr3 52215029 52215113 -107384670 - MER5A DNA MER1_type -100 89 2 3 983 307 259 127 22 chr3 52215191 52215325 -107384458 - B1F2 SINE Alu 0 149 2 3 983 1591 118 24 151 chr3 52216036 52216505 -107383278 - RMER17C LTR ERVK 0 410 2 3 983 234 319 135 21 chr3 52217695 52217836 -107381947 + RLTR22_Mur LTR ERVK 1310 1466 -382 3 983 321 252 84 96 chr3 52218369 52218523 -107381260 + Charlie7a DNA MER1_type 41 192 -80 3 983 922 224 43 19 chr3 52218523 52218732 -107381051 - B3 SINE B2 0 216 3 3 983 321 252 84 96 chr3 52218732 52218744 -107381039 + Charlie7a DNA MER1_type 193 204 -68 3 983 698 157 12 12 chr3 52218744 52218905 -107380878 + (TA)n Simple_repeat Simple_repeat 1 161 0 3 983 350 272 36 24 chr3 52218968 52219107 -107380676 + B4 SINE B4 10 154 -138 3 983 649 264 12 18 chr3 52219161 52219327 -107380456 - MLT2B1 LTR ERVL -353 167 3 3 983 1717 132 170 25 chr3 52219947 52220121 -107379662 - RMER17C LTR ERVK 0 410 181 3 983 828 69 0 0 chr3 52220121 52220237 -107379546 + (GA)n Simple_repeat Simple_repeat 1 116 0 3 983 1717 132 170 25 chr3 52220237 52220420 -107379363 - RMER17C LTR ERVK -230 180 2 3 983 303 173 74 49 chr3 52220420 52220505 -107379278 + B1_Mur3 SINE Alu 22 136 -13 3 983 300 70 0 0 chr3 52220508 52220551 -107379232 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 3 983 921 293 129 36 chr3 52221082 52221590 -107378193 - LTR48B LTR ERV1 -48 596 4 3 983 790 308 109 42 chr3 52222067 52222609 -107377174 + L1MEc LINE L1 53 630 -5770 3 983 376 263 25 33 chr3 52222618 52222740 -107377043 + L1MEc LINE L1 5333 5453 -866 3 983 406 296 79 83 chr3 52223032 52223297 -107376486 - MLT1C LTR MaLR -2 465 202 3 983 219 326 0 0 chr3 52223338 52223387 -107376396 - PB1 SINE Alu -78 49 1 3 983 328 138 227 11 chr3 52223407 52223495 -107376288 - MLT1D LTR MaLR -364 141 35 3 983 537 16 0 0 chr3 52223558 52223620 -107376163 + (TCTA)n Simple_repeat Simple_repeat 4 65 0 3 983 1465 233 98 3 chr3 52223689 52224067 -107375716 + MTD LTR MaLR 6 419 0 3 983 335 258 113 0 chr3 52224542 52224639 -107375144 - ORR1E LTR MaLR -248 111 4 3 983 668 61 10 0 chr3 52224819 52224917 -107374866 + (TC)n Simple_repeat Simple_repeat 2 100 0 3 983 2098 158 53 81 chr3 52225330 52225527 -107374256 + MTC LTR MaLR 1 210 -211 3 983 1102 96 7 7 chr3 52225527 52225674 -107374109 + B1_Mus1 SINE Alu 2 148 0 3 983 2098 158 53 81 chr3 52225674 52225909 -107373874 + MTC LTR MaLR 211 421 0 3 983 424 193 171 0 chr3 52227375 52227463 -107372320 + PB1D10 SINE Alu 10 112 -5 4 983 453 134 0 171 chr3 52227693 52227810 -107371973 + MTC LTR MaLR 1 97 -324 4 983 2729 141 24 0 chr3 52227816 52228317 -107371466 + Lx5 LINE L1 5455 5972 -1078 4 983 841 172 141 67 chr3 52228406 52228705 -107371078 + MTC-int LTR MaLR 938 1258 0 4 983 1540 135 8 15 chr3 52228705 52228968 -107370815 + MTC LTR MaLR 1 261 -160 4 983 361 188 14 0 chr3 52229155 52229224 -107370559 + RMER15 LTR ERVL 1 70 -505 4 983 1131 124 0 0 chr3 52229737 52229914 -107369869 + (GAA)n Simple_repeat Simple_repeat 3 179 0 4 983 2102 200 95 29 chr3 52229914 52230273 -107369510 + RMER15 LTR ERVL 68 461 -114 4 983 4380 18 8 0 chr3 52230273 52230762 -107369021 + MT2_Mm LTR ERVL 1 493 0 4 983 2102 200 95 29 chr3 52230762 52230877 -107368906 + RMER15 LTR ERVL 462 574 -1 4 983 649 219 7 52 chr3 52230931 52231085 -107368698 - B1_Mur1 SINE Alu 0 149 3 4 983 506 239 0 9 chr3 52231116 52231230 -107368553 - PB1D10 SINE Alu 0 117 5 4 983 369 0 0 0 chr3 52232031 52232072 -107367711 + (TTTTA)n Simple_repeat Simple_repeat 5 45 0 4 983 636 192 16 0 chr3 52232072 52232197 -107367586 - B3 SINE B2 -16 200 74 4 983 694 293 9 24 chr3 52233757 52233967 -107365816 - B4 SINE B4 -2 290 84 4 983 699 12 0 0 chr3 52233967 52234047 -107365736 + (TCCC)n Simple_repeat Simple_repeat 3 82 0 4 983 585 28 0 0 chr3 52234047 52234118 -107365665 + (TTTC)n Simple_repeat Simple_repeat 2 72 0 4 983 38779 30 0 1 chr3 52234594 52241225 -107358558 - L1Md_T LINE L1 0 6585 1 4 983 423 0 0 0 chr3 52241393 52241440 -107358343 + (CA)n Simple_repeat Simple_repeat 1 47 0 4 983 227 242 32 16 chr3 52241451 52241514 -107358269 - Lx9 LINE L1 -265 7379 7316 4 983 342 189 8 152 chr3 52241514 52241639 -107358144 + MT2B LTR ERVL 151 257 -344 4 983 934 52 14 42 chr3 52241541 52241683 -107358100 + B1_Mm SINE Alu 10 147 0 4 983 1005 304 30 6 chr3 52241716 52242044 -107357739 - Lx8 LINE L1 -318 7155 6820 4 983 303 189 95 0 chr3 52242077 52242151 -107357632 - B4 SINE B4 -195 97 17 4 983 780 204 0 33 chr3 52242164 52242316 -107357467 - B1_Mur2 SINE Alu -1 148 2 4 983 6442 183 106 13 chr3 52242375 52243678 -107356105 + Lx7 LINE L1 5588 7011 -685 4 983 788 247 135 20 chr3 52243658 52243955 -107355828 - Lx6 LINE L1 -1290 6170 5840 4 983 343 104 0 0 chr3 52243958 52244006 -107355777 - ORR1A4 LTR MaLR -8 321 274 4 983 186 26 77 26 chr3 52244006 52244045 -107355738 + (TTTTG)n Simple_repeat Simple_repeat 4 44 0 4 983 673 71 0 10 chr3 52244046 52244146 -107355637 - B1_Mus2 SINE Alu -2 145 47 4 983 1843 109 7 11 chr3 52244146 52244433 -107355350 - ORR1A4 LTR MaLR -43 286 1 4 983 915 138 0 7 chr3 52244433 52244579 -107355204 - Lx5 LINE L1 -1202 5848 5704 4 983 1635 258 75 47 chr3 52244589 52245337 -107354446 + Lx6 LINE L1 6205 7459 -1 4 983 772 154 6 6 chr3 52245337 52245494 -107354289 + GA-rich Low_complexity Low_complexity 2 158 0 4 983 1775 186 83 64 chr3 52245502 52245938 -107353845 + Lx7 LINE L1 6974 7417 -279 4 983 346 108 31 0 chr3 52246016 52246081 -107353702 + Lx7 LINE L1 7621 7687 -9 4 983 1275 112 0 0 chr3 52246383 52246723 -107353060 + (GGA)n Simple_repeat Simple_repeat 1 340 0 4 983 291 298 114 11 chr3 52246974 52247137 -107352646 - MLT1C LTR MaLR -287 180 5 4 983 281 198 63 13 chr3 52247243 52247402 -107352381 + (TA)n Simple_repeat Simple_repeat 2 168 0 4 983 28 79 0 0 chr3 52247402 52247465 -107352318 + AT_rich Low_complexity Low_complexity 1 63 0 4 983 22 35 0 0 chr3 52247545 52247574 -107352209 + AT_rich Low_complexity Low_complexity 1 29 0 4 983 438 307 28 21 chr3 52248285 52248428 -107351355 - B1F1 SINE Alu -1 148 5 4 983 653 262 76 36 chr3 52248626 52248903 -107350880 + B4 SINE B4 5 292 0 4 983 363 214 57 28 chr3 52249222 52249328 -107350455 + Tigger5 DNA MER2_type 9 117 -2289 4 983 615 27 0 0 chr3 52249492 52249565 -107350218 + (GA)n Simple_repeat Simple_repeat 1 73 0 4 983 206 86 57 0 chr3 52249607 52249642 -107350141 + (TATAG)n Simple_repeat Simple_repeat 3 39 0 4 983 2403 187 69 8 chr3 52250155 52250678 -107349105 - RMER19B LTR ERVK -12 890 336 4 983 844 190 24 6 chr3 52250702 52250866 -107348917 - RMER19B LTR ERVK -681 221 55 4 983 642 185 62 0 chr3 52250842 52250972 -107348811 - RMER19B LTR ERVK -764 138 1 4 983 595 171 0 15 chr3 52251164 52251295 -107348488 + GA-rich Low_complexity Low_complexity 3 131 0 4 983 227 342 183 4 chr3 52252837 52253066 -107346717 - B4A SINE B4 -18 274 5 4 983 758 248 6 0 chr3 52253133 52253290 -107346493 + B3 SINE B2 25 182 -34 4 983 1326 93 0 0 chr3 52253290 52253637 -107346146 + (TCTA)n Simple_repeat Simple_repeat 1 347 0 4 983 770 226 122 0 chr3 52253698 52253879 -107345904 - B3 SINE B2 -10 206 4 4 983 747 181 23 0 chr3 52254231 52254364 -107345419 + B1_Mur3 SINE Alu 1 136 -13 4 983 435 261 17 51 chr3 52256680 52256797 -107342986 - PB1D10 SINE Alu -2 115 3 4 983 303 198 31 139 chr3 52257527 52257656 -107342127 - L1MA6 LINE L1 -7 6293 6179 4 983 509 340 18 57 chr3 52257672 52257900 -107341883 - ID_B1 SINE B4 0 224 6 4 983 392 296 100 20 chr3 52257916 52258116 -107341667 - L1MA4 LINE L1 -126 6174 5959 4 983 347 121 0 33 chr3 52258210 52258270 -107341513 + B1_Mus1 SINE Alu 3 60 -88 4 983 304 158 65 65 chr3 52258314 52258422 -107341361 + RLTR25B LTR ERVK 397 504 -524 4 983 720 94 0 9 chr3 52258358 52258465 -107341318 + B1_Mus2 SINE Alu 42 147 0 4 983 515 233 35 57 chr3 52258557 52258698 -107341085 + B3 SINE B2 4 141 -75 4 983 417 20 0 0 chr3 52258710 52258760 -107341023 + (TG)n Simple_repeat Simple_repeat 1 50 0 4 983 302 197 30 0 chr3 52258760 52258826 -107340957 - L1MA4 LINE L1 -383 5917 5850 4 983 659 220 70 52 chr3 52258852 52259082 -107340701 - L1MA4 LINE L1 -610 5690 5457 4 983 1017 245 60 143 chr3 52259239 52259434 -107340349 - L1MA4 LINE L1 -867 5276 5106 4 983 622 143 131 182 chr3 52259434 52259648 -107340135 - B3 SINE B2 -10 206 4 4 983 1017 245 60 143 chr3 52259648 52260048 -107339735 - L1MA4 LINE L1 -1038 5105 4730 4 983 276 200 0 0 chr3 52260264 52260324 -107339459 + CT-rich Low_complexity Low_complexity 2 61 0 4 983 542 87 0 12 chr3 52260450 52260532 -107339251 + (TTTC)n Simple_repeat Simple_repeat 1 81 0 4 983 1154 107 6 0 chr3 52260532 52260709 -107339074 + (TTCC)n Simple_repeat Simple_repeat 3 180 0 4 983 708 79 0 0 chr3 52260709 52260810 -107338973 - B1_Mus2 SINE Alu -5 142 42 4 983 284 130 68 55 chr3 52260747 52260814 -107338969 - RLTR25B LTR ERVK -519 509 441 4 983 667 145 135 16 chr3 52260814 52260940 -107338843 - B1_Mus2 SINE Alu -6 141 1 4 983 751 204 51 6 chr3 52261010 52261168 -107338615 + B3 SINE B2 1 165 -51 4 983 474 18 0 0 chr3 52261168 52261223 -107338560 + (CATA)n Simple_repeat Simple_repeat 2 56 0 4 983 348 276 32 175 chr3 52261317 52261471 -107338312 + ID_B1 SINE B4 93 224 0 4 983 1293 83 0 0 chr3 52261566 52261746 -107338037 + (TTTCC)n Simple_repeat Simple_repeat 1 180 0 4 983 924 79 0 0 chr3 52261746 52261872 -107337911 + (TCCCC)n Simple_repeat Simple_repeat 5 130 0 4 983 195 250 0 0 chr3 52261901 52261969 -107337814 + (TG)n Simple_repeat Simple_repeat 1 68 0 4 983 1462 238 70 3 chr3 52261985 52262356 -107337427 + MTD LTR MaLR 1 396 -23 4 983 445 229 9 28 chr3 52262397 52262505 -107337278 - RSINE1 SINE B4 -58 107 2 4 983 186 43 0 0 chr3 52263374 52263397 -107336386 + (CCA)n Simple_repeat Simple_repeat 1 23 0 4 983 205 195 0 0 chr3 52263399 52263440 -107336343 + A-rich Low_complexity Low_complexity 1 41 0 4 983 275 209 0 29 chr3 52263686 52263755 -107336028 + ID4 SINE ID 2 68 -15 4 983 186 128 0 0 chr3 52264987 52265026 -107334757 + (TTTTTG)n Simple_repeat Simple_repeat 3 41 0 4 983 569 123 20 5 chr3 52265312 52265427 -107334356 - B2_Mm2 SINE B2 -95 121 1 4 983 540 74 0 12 chr3 52265434 52265516 -107334267 + URR1B DNA MER1_type 145 225 0 4 983 241 299 23 11 chr3 52265631 52265719 -107334064 + MER103 DNA DNA 71 159 -7 4 983 302 176 47 41 chr3 52265850 52266022 -107333761 + CT-rich Low_complexity Low_complexity 1 173 0 4 983 480 214 0 0 chr3 52266996 52267108 -107332675 + CT-rich Low_complexity Low_complexity 2 113 0 4 983 236 30 30 0 chr3 52267485 52267518 -107332265 + (TTTTA)n Simple_repeat Simple_repeat 2 35 0 4 983 205 327 75 0 chr3 52267959 52268066 -107331717 + MIRb SINE MIR 8 122 -146 4 983 226 213 0 0 chr3 52268144 52268191 -107331592 + CT-rich Low_complexity Low_complexity 6 52 0 4 983 272 158 0 17 chr3 52268192 52268250 -107331533 + C-rich Low_complexity Low_complexity 1 57 0 4 983 281 291 12 12 chr3 52268253 52268333 -107331450 - ID4 SINE ID -2 81 2 4 983 21 0 0 0 chr3 52268335 52268356 -107331427 + AT_rich Low_complexity Low_complexity 1 21 0 4 983 234 0 0 0 chr3 52269080 52269106 -107330677 + (TG)n Simple_repeat Simple_repeat 2 27 0 4 983 2253 129 28 8 chr3 52269341 52269700 -107330083 + ORR1B2 LTR MaLR 1 366 -1 4 983 1170 41 14 0 chr3 52270055 52270200 -107329583 + B1_Mm SINE Alu 1 147 0 4 983 360 210 0 0 chr3 52271401 52271482 -107328301 + (TG)n Simple_repeat Simple_repeat 2 82 0 4 983 333 47 0 0 chr3 52271482 52271525 -107328258 + (GA)n Simple_repeat Simple_repeat 1 43 0 4 983 193 344 172 17 chr3 52272387 52272677 -107327106 + L3 LINE CR1 3986 4320 -169 4 983 480 122 0 0 chr3 52272784 52272866 -107326917 + (TA)n Simple_repeat Simple_repeat 2 83 0 4 983 667 250 120 21 chr3 52272942 52273134 -107326649 - ID_B1 SINE B4 -12 212 2 4 983 207 0 0 0 chr3 52273797 52273820 -107325963 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 4 983 189 342 0 14 chr3 52274248 52274322 -107325461 + L2c LINE L2 3269 3341 -46 4 983 616 309 98 11 chr3 52274464 52274729 -107325054 - RMER15 LTR ERVL -2 573 286 4 983 904 86 22 0 chr3 52276030 52276169 -107323614 + (TTTC)n Simple_repeat Simple_repeat 1 142 0 4 983 650 266 56 15 chr3 52276238 52276433 -107323350 - B3 SINE B2 -3 213 11 4 983 245 281 0 37 chr3 52277531 52277638 -107322145 - L2 LINE L2 -736 2683 2581 5 983 705 221 57 0 chr3 52278190 52278330 -107321453 - B1_Mur2 SINE Alu -1 148 1 5 983 1077 124 50 17 chr3 52278521 52278701 -107321082 - B2_Mm2 SINE B2 -9 186 1 5 983 225 191 0 0 chr3 52279293 52279340 -107320443 + (TATAA)n Simple_repeat Simple_repeat 2 48 0 5 983 1693 26 0 0 chr3 52279433 52279625 -107320158 - B2_Mm1a SINE B2 0 193 2 5 983 871 121 38 0 chr3 52279762 52279894 -107319889 + B1_Mur4 SINE Alu 5 141 -9 5 983 22 56 0 0 chr3 52279894 52279930 -107319853 + AT_rich Low_complexity Low_complexity 1 36 0 5 983 695 243 86 32 chr3 52279957 52280144 -107319639 - B3 SINE B2 -19 197 1 5 983 317 361 95 27 chr3 52280857 52281193 -107318590 + MamRep605 Unknown Unknown 382 740 -136 5 983 492 62 0 0 chr3 52281619 52281683 -107318100 + (TA)n Simple_repeat Simple_repeat 1 64 0 5 983 294 351 60 22 chr3 52281861 52282129 -107317654 - L1ME4a LINE L1 -68 6056 5779 5 983 535 210 89 0 chr3 52282687 52282811 -107316972 + B1F2 SINE Alu 2 136 -13 5 983 324 0 0 0 chr3 52282811 52282847 -107316936 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 5 983 423 98 0 0 chr3 52283942 52284003 -107315780 + (TC)n Simple_repeat Simple_repeat 2 62 0 5 983 1277 228 111 35 chr3 52284004 52284270 -107315513 - MTD LTR MaLR -23 396 110 5 983 1329 71 49 6 chr3 52284270 52284453 -107315330 + B2_Mm2 SINE B2 2 192 -3 5 983 1277 228 111 35 chr3 52284453 52284554 -107315229 - MTD LTR MaLR -310 109 1 5 983 210 37 0 0 chr3 52284815 52284842 -107314941 + (GGAA)n Simple_repeat Simple_repeat 4 30 0 5 983 218 238 193 45 chr3 52285138 52285169 -107314614 + PB1D9 SINE Alu 20 54 -66 5 983 186 43 0 0 chr3 52285169 52285192 -107314591 + (CGGGGG)n Simple_repeat Simple_repeat 2 24 0 5 983 218 238 193 45 chr3 52285192 52285248 -107314535 + PB1D9 SINE Alu 55 120 0 5 983 359 321 127 21 chr3 52285445 52285776 -107314007 + L1MC5 LINE L1 6783 7148 -813 5 983 355 305 104 33 chr3 52285876 52286059 -107313724 + L1MC5 LINE L1 7291 7486 -475 5 983 185 304 101 0 chr3 52286059 52286128 -107313655 - L3b LINE CR1 -21 461 386 5 983 342 0 0 0 chr3 52286556 52286594 -107313189 + (TG)n Simple_repeat Simple_repeat 2 39 0 5 983 361 228 0 122 chr3 52286602 52286717 -107313066 - B3A SINE B2 -46 170 70 5 983 212 200 0 0 chr3 52286798 52286838 -107312945 - B3A SINE B2 -158 40 1 5 983 23 0 0 0 chr3 52286880 52286903 -107312880 + AT_rich Low_complexity Low_complexity 1 23 0 5 983 396 224 0 144 chr3 52287011 52287031 -107312752 + MT2B LTR ERVL 151 152 -449 5 983 803 139 85 28 chr3 52287031 52287157 -107312626 + B1_Mur3 SINE Alu 1 135 -14 5 983 183 42 0 0 chr3 52287157 52287181 -107312602 + (CAAA)n Simple_repeat Simple_repeat 3 26 0 5 983 803 139 85 28 chr3 52287181 52287195 -107312588 + B1_Mur3 SINE Alu 136 149 0 5 983 403 226 24 12 chr3 52289408 52289493 -107310290 + B4 SINE B4 1 86 -206 5 983 804 192 7 33 chr3 52289518 52289669 -107310114 + B1_Mus1 SINE Alu 2 148 0 5 983 488 170 0 20 chr3 52289751 52289853 -107309930 + G-rich Low_complexity Low_complexity 4 103 0 5 983 1208 85 0 17 chr3 52289854 52290034 -107309749 + (GGAGA)n Simple_repeat Simple_repeat 2 178 0 5 983 303 283 84 9 chr3 52290885 52290992 -107308791 + MIRb SINE MIR 50 164 -104 5 983 1847 128 46 99 chr3 52291042 52291229 -107308554 + RMER17C LTR ERVK 1 184 -226 5 983 1363 39 11 0 chr3 52291229 52291407 -107308376 + (TCTCCC)n Simple_repeat Simple_repeat 1 180 0 5 983 1847 128 46 99 chr3 52291407 52291652 -107308131 + RMER17C LTR ERVK 185 410 0 5 983 459 0 0 0 chr3 52291738 52291789 -107307994 + (TTTTG)n Simple_repeat Simple_repeat 2 52 0 5 983 946 171 102 34 chr3 52292674 52292880 -107306903 - URR1B DNA MER1_type -5 220 1 5 983 1190 44 0 0 chr3 52293499 52293636 -107306147 + B1_Mus2 SINE Alu 1 137 -10 5 983 281 47 23 0 chr3 52293636 52293679 -107306104 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 5 983 209 353 68 43 chr3 52295028 52295309 -107304474 - L2a LINE L2 -58 3368 2881 5 983 452 253 140 22 chr3 52295322 52295500 -107304283 - Tigger7 DNA MER2_type -9 2482 2284 5 983 494 320 14 74 chr3 52295496 52295712 -107304071 - Tigger7 DNA MER2_type -2284 207 5 5 983 242 338 12 83 chr3 52295936 52296104 -107303679 - RMER4A LTR ERVK -286 180 25 5 983 660 87 0 0 chr3 52296129 52296221 -107303562 + (TTCC)n Simple_repeat Simple_repeat 1 92 0 5 983 431 355 27 23 chr3 52296275 52296575 -107303208 - L1MB4 LINE L1 -184 5996 5696 5 983 271 313 67 0 chr3 52296628 52296762 -107303021 - L1M3 LINE L1 -452 5728 5586 5 983 251 237 158 0 chr3 52296902 52297016 -107302767 - L1M3 LINE L1 -789 5391 5260 5 122 642 227 0 0 chr3 52297682 52297792 -107301991 - PB1D10 SINE Alu -5 112 3 5 122 239 321 40 68 chr3 52297699 52297734 -107302049 + YREP_Mm Unknown Unknown 223 275 -1537 5 984 296 238 0 45 chr3 52297734 52297800 -107301983 - B4A SINE B4 -147 145 83 5 984 239 321 40 68 chr3 52297800 52297876 -107301907 + YREP_Mm Unknown Unknown 276 394 -1418 5 984 2885 136 30 24 chr3 52298025 52298366 -107301417 - RLTR11A LTR ERVK 0 528 190 5 984 450 0 0 0 chr3 52298366 52298416 -107301367 + (CA)n Simple_repeat Simple_repeat 2 51 0 5 984 2885 136 30 24 chr3 52298416 52298572 -107301211 - RLTR11A LTR ERVK -339 189 29 5 984 536 269 27 7 chr3 52298976 52299126 -107300657 + MLT2C2 LTR ERVL 1 153 -311 5 984 467 337 75 39 chr3 52299202 52299235 -107300548 + MLT2C2 LTR ERVL 133 164 -300 5 984 473 263 144 0 chr3 52299235 52299353 -107300430 + B1_Mur1 SINE Alu 5 139 -10 5 984 467 337 75 39 chr3 52299353 52299600 -107300183 + MLT2C2 LTR ERVL 165 423 -41 5 984 555 224 0 0 chr3 52299611 52299790 -107299993 + (CA)n Simple_repeat Simple_repeat 1 179 0 5 984 414 0 0 0 chr3 52299835 52299881 -107299902 + (GA)n Simple_repeat Simple_repeat 1 46 0 5 984 379 351 30 50 chr3 52299882 52300080 -107299703 + MER2 DNA MER2_type 4 197 -148 5 984 258 306 30 30 chr3 52300158 52300259 -107299524 + MTEa LTR MaLR 278 378 -1 5 984 190 335 149 19 chr3 52300643 52300804 -107298979 - MIRb SINE MIR -68 200 19 5 984 495 0 0 0 chr3 52301275 52301330 -107298453 + (TCTA)n Simple_repeat Simple_repeat 4 58 0 5 984 1073 293 92 40 chr3 52301919 52302267 -107297516 - MTEa LTR MaLR -13 366 1 5 984 226 268 49 0 chr3 52302316 52302398 -107297385 + RLTR22_Mus LTR ERVK 618 703 -1105 5 984 296 346 100 23 chr3 52302753 52302883 -107296900 - MIRc SINE MIR -58 210 71 5 984 418 296 111 0 chr3 52303166 52303301 -107296482 + RSINE1 SINE B4 4 153 -12 5 984 226 200 0 62 chr3 52303581 52303629 -107296154 + ID_B1 SINE B4 175 219 -5 5 984 262 345 26 0 chr3 52303684 52303797 -107295986 - MIR SINE MIR -91 171 56 5 984 707 290 19 24 chr3 52304323 52304535 -107295248 - MER96B DNA hAT -183 234 24 5 984 517 199 63 78 chr3 52304643 52304785 -107294998 + B1_Mur3 SINE Alu 1 140 -9 5 984 240 35 0 0 chr3 52304786 52304815 -107294968 + (CA)n Simple_repeat Simple_repeat 2 30 0 5 984 666 259 57 16 chr3 52304816 52305008 -107294775 - B3 SINE B2 -15 201 2 5 984 358 180 17 51 chr3 52305980 52306156 -107293627 + (GGGTG)n Simple_repeat Simple_repeat 2 171 0 5 984 212 138 45 15 chr3 52307325 52307391 -107292392 + (TG)n Simple_repeat Simple_repeat 1 68 0 5 984 504 0 0 0 chr3 52307729 52307785 -107291998 + (TC)n Simple_repeat Simple_repeat 1 56 0 5 984 414 0 0 0 chr3 52307785 52307831 -107291952 + (CA)n Simple_repeat Simple_repeat 1 46 0 5 984 1068 131 0 0 chr3 52309170 52309345 -107290438 + (TG)n Simple_repeat Simple_repeat 1 175 0 5 984 234 0 0 0 chr3 52309932 52309958 -107289825 + (TTAA)n Simple_repeat Simple_repeat 3 28 0 5 984 3567 131 65 14 chr3 52309958 52310547 -107289236 - Lx4A LINE L1 -3 7055 6437 5 984 1292 175 4 18 chr3 52310615 52310842 -107288941 - URR1B DNA MER1_type -1 224 1 5 984 274 329 17 101 chr3 52311122 52311301 -107288482 - MIR SINE MIR -41 221 58 5 984 31 0 0 0 chr3 52311533 52311564 -107288219 + AT_rich Low_complexity Low_complexity 1 31 0 5 984 2207 178 43 32 chr3 52311645 52312086 -107287697 - RLTR41 LTR ERV1 0 446 1 5 984 699 280 98 11 chr3 52313285 52313549 -107286234 - B4A SINE B4 -5 287 1 5 984 191 288 82 0 chr3 52313783 52313856 -107285927 + L3 LINE CR1 3853 3931 -558 5 984 288 229 102 28 chr3 52314914 52315022 -107284761 + PB1D10 SINE Alu 1 116 -1 5 984 318 270 0 100 chr3 52315022 52315162 -107284621 + ID4_ SINE ID 4 129 -23 5 984 307 267 135 48 chr3 52315235 52315361 -107284422 + L1M5 LINE L1 5537 5673 -567 5 984 5469 10 0 3 chr3 52315934 52316538 -107283245 - L1Md_T LINE L1 0 6582 5981 5 984 452 350 27 5 chr3 52316551 52316738 -107283045 - MIR SINE MIR -25 237 47 5 984 3492 25 5 0 chr3 52318219 52318613 -107281170 + MTA_Mm LTR MaLR 1 396 0 5 984 374 228 65 0 chr3 52318831 52318923 -107280860 + PB1D9 SINE Alu 9 106 -14 5 984 275 0 29 0 chr3 52318925 52318960 -107280823 + (CAGA)n Simple_repeat Simple_repeat 3 38 0 5 984 1754 152 137 24 chr3 52319678 52319826 -107279957 + ORR1D1 LTR MaLR 1 176 -198 5 984 453 19 0 0 chr3 52319826 52319880 -107279903 + (TC)n Simple_repeat Simple_repeat 2 55 0 5 984 1754 152 137 24 chr3 52319880 52320067 -107279716 + ORR1D1 LTR MaLR 177 374 0 5 984 711 142 19 0 chr3 52321680 52321842 -107277941 + (TG)n Simple_repeat Simple_repeat 2 166 0 5 984 306 284 32 45 chr3 52322240 52322395 -107277388 + MER53 DNA hAT 41 193 0 5 984 733 200 15 0 chr3 52322519 52322654 -107277129 + B1_Mur2 SINE Alu 3 139 -10 5 984 346 197 0 16 chr3 52323450 52323512 -107276271 + PB1D9 SINE Alu 60 120 0 5 984 231 308 38 19 chr3 52323546 52323652 -107276131 - MIR SINE MIR -56 152 45 5 984 322 214 71 0 chr3 52325116 52325200 -107274583 + MER2 DNA MER2_type 126 215 -130 5 984 1826 197 58 104 chr3 52326116 52326655 -107273128 - Lx7 LINE L1 -2 7694 7181 5 984 306 296 0 204 chr3 52326655 52326812 -107272971 - MLT1A1 LTR MaLR -270 138 14 5 984 192 204 136 0 chr3 52327359 52327403 -107272380 - MER5A DNA MER1_type 0 189 140 5 984 222 37 0 0 chr3 52327419 52327446 -107272337 + (TG)n Simple_repeat Simple_repeat 2 28 0 6 984 191 42 0 0 chr3 52327488 52327512 -107272271 - MER5A DNA MER1_type -38 151 128 5 984 1032 161 5 30 chr3 52327516 52327714 -107272069 + B2_Mm2 SINE B2 3 195 0 6 984 297 0 0 0 chr3 52327726 52327759 -107272024 + (CCAA)n Simple_repeat Simple_repeat 2 34 0 6 984 464 254 161 0 chr3 52327865 52327983 -107271800 - B4 SINE B4 -75 217 81 6 984 8310 70 3 2 chr3 52327983 52329080 -107270703 - L1_Mus4 LINE L1 -7 6629 5532 6 984 222 233 0 0 chr3 52329085 52329128 -107270655 - B4 SINE B4 -201 91 49 6 984 283 167 117 0 chr3 52329255 52329315 -107270468 - MER5A DNA MER1_type -109 80 14 5 984 296 379 86 0 chr3 52329653 52329793 -107269990 - MIRb SINE MIR -30 238 87 6 984 308 283 21 21 chr3 52329876 52329970 -107269813 + Tigger5 DNA MER2_type 151 244 -2162 6 984 334 342 0 18 chr3 52329965 52330078 -107269705 + Tigger5 DNA MER2_type 2293 2403 -3 6 984 270 136 0 0 chr3 52330459 52330503 -107269280 + (CACCAT)n Simple_repeat Simple_repeat 4 47 0 6 984 339 78 0 0 chr3 52331680 52331731 -107268052 + (T)n Simple_repeat Simple_repeat 1 51 0 6 984 210 37 0 0 chr3 52332438 52332465 -107267318 + (TCTG)n Simple_repeat Simple_repeat 4 30 0 6 984 269 326 17 21 chr3 52333128 52333269 -107266514 - MIR3 SINE MIR 0 208 72 6 984 1080 244 51 20 chr3 52333558 52333913 -107265870 + L1MA6 LINE L1 5934 6299 -1 6 984 774 275 63 59 chr3 52334353 52334639 -107265144 - B4 SINE B4 -1 291 5 6 984 353 311 60 8 chr3 52335290 52335423 -107264360 - MIRb SINE MIR -46 222 83 6 984 580 282 63 6 chr3 52336205 52336380 -107263403 - L1MC1 LINE L1 -78 6255 6071 6 984 2083 107 24 30 chr3 52336855 52337092 -107262691 - ORR1A2 LTR MaLR 0 327 92 6 984 3317 31 2 159 chr3 52337092 52337625 -107262158 + L1Md_F2 LINE L1 6134 6582 0 6 984 2083 107 24 30 chr3 52337625 52337716 -107262067 - ORR1A2 LTR MaLR -236 91 1 6 984 451 0 0 33 chr3 52338964 52339025 -107260758 + (TC)n Simple_repeat Simple_repeat 1 59 0 6 984 330 26 0 0 chr3 52340472 52340511 -107259272 + (TG)n Simple_repeat Simple_repeat 1 39 0 6 984 577 298 75 20 chr3 52340522 52340775 -107259008 - B4A SINE B4 -24 268 2 6 984 240 319 60 34 chr3 52341018 52341167 -107258616 + MIR3 SINE MIR 47 199 -9 6 984 189 74 0 0 chr3 52341287 52341314 -107258469 + (TGGGGG)n Simple_repeat Simple_repeat 4 30 0 6 984 1888 243 23 8 chr3 52342086 52342567 -107257216 + MT2A LTR ERVL 1 488 -45 6 984 323 182 13 0 chr3 52342567 52342644 -107257139 + (CA)n Simple_repeat Simple_repeat 1 78 0 6 984 457 282 0 12 chr3 52344164 52344308 -107255475 - Lx8 LINE L1 -1046 6598 6328 6 984 226 234 0 0 chr3 52344367 52344414 -107255369 + L2a LINE L2 3374 3420 -6 6 984 468 277 45 23 chr3 52344593 52344726 -107255057 - B1F SINE Alu -2 147 12 6 984 382 300 58 26 chr3 52344726 52344747 -107255036 - ID_B1 SINE B4 0 224 66 6 984 195 125 0 0 chr3 52344747 52344787 -107254996 + (TTTTTG)n Simple_repeat Simple_repeat 2 41 0 6 984 296 325 55 45 chr3 52344995 52345195 -107254588 - L3 LINE CR1 -195 4294 4093 6 984 291 224 0 0 chr3 52345871 52345947 -107253836 + GA-rich Low_complexity Low_complexity 1 76 0 6 984 241 211 41 27 chr3 52346438 52346511 -107253272 + MIR SINE MIR 68 141 -67 6 984 199 125 0 0 chr3 52346964 52346996 -107252787 + MIR3 SINE MIR 157 188 -20 6 984 549 325 21 50 chr3 52347907 52348189 -107251594 - MER44B DNA MER2_type -11 539 266 6 984 452 360 4 63 chr3 52348268 52348425 -107251358 - MER44D DNA MER2_type -459 246 99 6 984 246 32 0 0 chr3 52348425 52348456 -107251327 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 6 984 452 360 4 63 chr3 52348456 52348535 -107251248 - MER44D DNA MER2_type -607 98 24 6 984 802 279 125 3 chr3 52348623 52348911 -107250872 - MTEa LTR MaLR -7 372 50 6 984 234 0 0 0 chr3 52349063 52349089 -107250694 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 6 984 439 256 11 0 chr3 52349409 52349585 -107250198 + (TG)n Simple_repeat Simple_repeat 1 178 0 6 984 384 292 96 42 chr3 52349806 52350045 -107249738 - L1MA8 LINE L1 -93 6198 5947 6 984 292 182 36 0 chr3 52350419 52350474 -107249309 + MIRc SINE MIR 101 157 -111 6 984 1226 43 0 18 chr3 52350935 52351099 -107248684 + L1Md_F3 LINE L1 6412 6572 -12 6 984 288 215 31 0 chr3 52351122 52351187 -107248596 - ID4 SINE ID 0 83 17 6 984 541 316 216 47 chr3 52351220 52351718 -107248065 + L1ME1 LINE L1 5384 5965 -214 6 984 439 306 48 20 chr3 52352558 52352808 -107246975 - L1ME4a LINE L1 -155 5969 5713 6 984 238 307 139 26 chr3 52352951 52353145 -107246638 + L1M5 LINE L1 5665 5880 -293 6 984 1034 255 160 31 chr3 52353280 52353725 -107246058 - Lx8 LINE L1 -9 7464 6963 6 984 677 232 203 41 chr3 52353738 52354151 -107245632 + L1MEc LINE L1 334 813 -5587 6 984 470 104 0 25 chr3 52354246 52354325 -107245458 + (GGGA)n Simple_repeat Simple_repeat 4 80 0 6 984 482 132 18 70 chr3 52354337 52354451 -107245332 + B1_Mur2 SINE Alu 41 148 -1 6 984 412 272 241 5 chr3 52354477 52354680 -107245103 - MER2 DNA MER2_type -63 282 32 6 984 298 280 70 30 chr3 52354933 52355132 -107244651 + L1MEc LINE L1 1794 2000 -4400 6 984 714 282 134 45 chr3 52355127 52355167 -107244616 + L1MEc LINE L1 3259 3291 -3028 6 984 8749 23 0 0 chr3 52355167 52356153 -107243630 + L1Md_T LINE L1 5588 6573 -9 6 984 243 0 0 0 chr3 52356156 52356183 -107243600 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 6 984 714 282 134 45 chr3 52356183 52356755 -107243028 + L1MEc LINE L1 3292 3927 -2392 6 984 951 120 66 0 chr3 52356756 52356908 -107242875 + B2_Mm2 SINE B2 1 163 -30 6 984 186 43 0 0 chr3 52356908 52356931 -107242852 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 6 984 788 181 73 34 chr3 52356931 52356955 -107242828 + B2_Mm1t SINE B2 164 184 -9 6 984 415 273 73 22 chr3 52356956 52357192 -107242591 + L1MC LINE L1 3756 3990 -2150 6 984 2445 116 104 0 chr3 52357220 52357575 -107242208 + ORR1B1 LTR MaLR 1 392 -2 6 984 247 286 91 0 chr3 52357585 52357662 -107242121 + MLT1B LTR MaLR 236 319 -71 6 984 201 197 0 0 chr3 52357919 52357985 -107241798 + CT-rich Low_complexity Low_complexity 3 68 0 6 984 293 245 48 29 chr3 52358892 52358997 -107240786 + MIR SINE MIR 31 137 -125 6 984 746 92 168 0 chr3 52359303 52359422 -107240361 + B1_Mus1 SINE Alu 1 139 -9 6 984 252 0 0 0 chr3 52360611 52360639 -107239144 + (T)n Simple_repeat Simple_repeat 1 28 0 6 984 950 145 0 6 chr3 52360675 52360842 -107238941 + CT-rich Low_complexity Low_complexity 1 166 0 6 984 363 96 0 0 chr3 52360836 52360888 -107238895 + (TCC)n Simple_repeat Simple_repeat 3 54 0 6 984 573 292 103 37 chr3 52361352 52361732 -107238051 - MLT2D LTR ERVL -8 406 2 6 984 386 21 0 0 chr3 52361826 52361874 -107237909 + HAL1-3A_ME LINE L1 1976 2023 -835 6 984 390 221 0 0 chr3 52361880 52362011 -107237772 + (CA)n Simple_repeat Simple_repeat 2 132 0 6 984 183 258 65 0 chr3 52362334 52362396 -107237387 + MIR SINE MIR 160 225 -37 6 984 234 0 0 0 chr3 52363093 52363119 -107236664 + (T)n Simple_repeat Simple_repeat 1 26 0 6 984 242 319 107 34 chr3 52363428 52363577 -107236206 - RSINE1 SINE B4 -3 162 3 6 984 1142 183 17 9 chr3 52364722 52364954 -107234829 + Lx LINE L1 6406 6639 -15 6 984 294 29 0 0 chr3 52364954 52364989 -107234794 + (TAA)n Simple_repeat Simple_repeat 2 36 0 6 984 391 275 31 70 chr3 52365468 52365597 -107234186 + B1F SINE Alu 19 142 -7 6 984 1284 225 93 23 chr3 52365603 52366045 -107233738 + RLTR11A2 LTR ERVK 1 473 -54 6 984 399 257 151 100 chr3 52366696 52367046 -107232737 - RLTR9A LTR ERVK 0 368 1 6 984 311 304 78 43 chr3 52367170 52367311 -107232472 + ID_B1 SINE B4 78 223 -1 6 984 439 186 117 58 chr3 52367193 52367313 -107232470 + B1F1 SINE Alu 20 146 -3 6 984 259 364 30 15 chr3 52368630 52368764 -107231019 + MIR SINE MIR 1 136 -126 6 984 962 117 20 7 chr3 52370053 52370199 -107229584 - B1_Mur4 SINE Alu 0 150 3 6 984 306 0 0 0 chr3 52370225 52370259 -107229524 + (TG)n Simple_repeat Simple_repeat 2 35 0 6 984 296 24 0 24 chr3 52370325 52370367 -107229416 + (TTTTTG)n Simple_repeat Simple_repeat 1 41 0 6 984 207 352 101 30 chr3 52370504 52370703 -107229080 + MIR SINE MIR 37 249 -13 6 984 207 354 73 0 chr3 52371742 52371838 -107227945 + MIRc SINE MIR 121 223 -45 6 984 955 142 6 6 chr3 52373442 52373619 -107226164 + GA-rich Low_complexity Low_complexity 2 178 0 6 984 369 0 0 0 chr3 52373619 52373660 -107226123 + (GAA)n Simple_repeat Simple_repeat 2 42 0 6 984 291 54 0 0 chr3 52373921 52373958 -107225825 + (CAGA)n Simple_repeat Simple_repeat 3 39 0 6 984 32 0 0 0 chr3 52374287 52374319 -107225464 + AT_rich Low_complexity Low_complexity 1 32 0 6 984 208 325 12 12 chr3 52374945 52375026 -107224757 + MIRb SINE MIR 21 101 -167 6 984 270 200 122 0 chr3 52375451 52375541 -107224242 - MIR SINE MIR -64 198 98 6 984 190 326 79 0 chr3 52375833 52375922 -107223861 - MIRb SINE MIR -45 223 128 6 984 24 0 0 0 chr3 52376052 52376076 -107223707 + AT_rich Low_complexity Low_complexity 1 24 0 6 984 1032 254 37 61 chr3 52376300 52376677 -107223106 + RLTR14 LTR ERV1 15 382 0 6 984 311 266 0 12 chr3 52376734 52376814 -107222969 - MTEb LTR MaLR -38 341 263 6 984 486 0 0 0 chr3 52376987 52377041 -107222742 + (TC)n Simple_repeat Simple_repeat 1 54 0 6 984 342 0 0 0 chr3 52377041 52377078 -107222705 + (CA)n Simple_repeat Simple_repeat 1 38 0 6 984 351 277 0 19 chr3 52377481 52377584 -107222199 - PB1D10 SINE Alu -5 112 12 6 984 346 197 0 0 chr3 52378111 52378172 -107221611 + B2_Mm2 SINE B2 2 62 -133 6 984 423 132 0 0 chr3 52379497 52379565 -107220218 + (TC)n Simple_repeat Simple_repeat 2 69 0 6 984 839 293 70 46 chr3 52380039 52380408 -107219375 + MTD LTR MaLR 3 380 -39 6 984 210 171 0 0 chr3 52381575 52381616 -107218167 + (TG)n Simple_repeat Simple_repeat 2 42 0 6 984 519 239 0 27 chr3 52381658 52381770 -107218013 - B4 SINE B4 -20 272 164 6 984 194 311 40 0 chr3 52384374 52384448 -107215335 + MIR SINE MIR 60 136 -72 7 984 288 235 151 20 chr3 52384478 52384630 -107215153 - MER20B DNA MER1_type -103 680 509 7 984 1419 247 70 60 chr3 52384794 52385306 -107214477 + Lx8 LINE L1 6956 7472 -1 7 984 23 0 0 0 chr3 52385881 52385904 -107213879 + AT_rich Low_complexity Low_complexity 1 23 0 7 984 234 322 11 0 chr3 52386196 52386299 -107213484 + CT-rich Low_complexity Low_complexity 1 104 0 7 984 1100 79 0 11 chr3 52386564 52386743 -107213040 + (TCTA)n Simple_repeat Simple_repeat 4 180 0 7 984 360 59 0 0 chr3 52386758 52386809 -107212974 + (TATG)n Simple_repeat Simple_repeat 2 52 0 7 984 994 89 0 22 chr3 52386809 52386992 -107212791 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 7 984 1635 169 171 60 chr3 52387192 52387589 -107212194 + BGLII_B LTR ERVK 1 441 0 7 984 654 55 0 0 chr3 52387853 52387944 -107211839 + (GA)n Simple_repeat Simple_repeat 2 92 0 7 984 422 273 76 131 chr3 52388218 52388416 -107211367 - B4A SINE B4 -75 217 31 7 984 1111 112 6 6 chr3 52389131 52389311 -107210472 + (TTC)n Simple_repeat Simple_repeat 1 180 0 7 984 230 234 21 0 chr3 52389312 52389359 -107210424 + polypyrimidine Low_complexity Low_complexity 3 50 0 7 984 27 0 0 0 chr3 52390324 52390351 -107209432 + AT_rich Low_complexity Low_complexity 1 27 0 7 984 336 351 16 71 chr3 52390519 52390703 -107209080 - B4A SINE B4 -118 174 1 7 984 211 262 16 0 chr3 52391158 52391219 -107208564 - L3 LINE CR1 -1603 2886 2825 7 984 1534 239 50 18 chr3 52391314 52391714 -107208069 - MTD LTR MaLR -2 417 5 7 984 284 262 62 47 chr3 52392217 52392345 -107207438 + MER67D LTR ERV1 69 198 -316 7 984 312 268 186 9 chr3 52392534 52392647 -107207136 - MLT1A0 LTR MaLR -231 134 2 7 984 309 305 97 21 chr3 52392908 52393052 -107206731 - MER45C DNA Tip100 -704 249 95 7 984 240 282 128 0 chr3 52393046 52393124 -107206659 + PB1D7 SINE Alu 33 120 0 7 984 455 236 146 73 chr3 52393167 52393427 -107206356 + B4 SINE B4 1 279 -13 7 984 628 245 121 11 chr3 52393481 52393671 -107206112 + B3 SINE B2 1 211 -5 7 984 2981 222 22 16 chr3 52394583 52395265 -107204518 - Lx9 LINE L1 -1 7643 6958 7 984 338 295 50 68 chr3 52395265 52395487 -107204296 - RLTR14 LTR ERV1 0 382 165 7 984 1807 190 121 0 chr3 52395638 52396027 -107203756 - Lx9 LINE L1 -683 6961 6526 7 984 260 341 106 25 chr3 52396031 52396305 -107203478 + L2 LINE L2 188 483 -2936 7 984 1011 238 128 3 chr3 52396438 52396720 -107203063 - MT2A LTR ERVL -216 317 1 7 984 1179 165 5 0 chr3 52397024 52397224 -107202559 - ORR1C1 LTR MaLR 0 378 178 7 984 454 290 144 65 chr3 52397228 52397567 -107202216 - RLTR9A LTR ERVK -1 367 2 7 984 429 20 0 0 chr3 52397597 52397647 -107202136 + (GA)n Simple_repeat Simple_repeat 1 50 0 7 984 896 149 25 0 chr3 52397660 52397821 -107201962 - ORR1C1 LTR MaLR -213 165 1 7 984 1422 134 321 3 chr3 52399797 52400096 -107199687 - ORR1B1 LTR MaLR 0 394 1 7 984 189 0 0 0 chr3 52400571 52400592 -107199191 + (CAG)n Simple_repeat Simple_repeat 1 21 0 7 984 599 0 14 0 chr3 52401014 52401085 -107198698 + (TC)n Simple_repeat Simple_repeat 1 72 0 7 984 208 278 111 0 chr3 52401516 52401588 -107198195 - L2 LINE L2 -659 2760 2681 7 984 923 280 58 97 chr3 52401613 52402147 -107197636 + MLT2B1 LTR ERVL 5 517 -3 7 984 396 323 31 12 chr3 52402409 52402569 -107197214 - MER5A1 DNA MER1_type -1 165 3 7 984 279 0 0 0 chr3 52403321 52403352 -107196431 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 7 984 1180 54 0 7 chr3 52403352 52403491 -107196292 - B1_Mus1 SINE Alu -9 139 1 7 984 1378 85 0 41 chr3 52403584 52403780 -107196003 - B2_Mm2 SINE B2 -7 188 1 7 984 243 0 0 0 chr3 52406156 52406183 -107193600 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 7 984 244 161 16 16 chr3 52406360 52406423 -107193360 + GA-rich Low_complexity Low_complexity 2 64 0 7 984 414 0 0 0 chr3 52407622 52407668 -107192115 + (TG)n Simple_repeat Simple_repeat 2 47 0 7 984 49 18 0 0 chr3 52408056 52408112 -107191671 + AT_rich Low_complexity Low_complexity 1 56 0 7 984 319 185 64 21 chr3 52408139 52408233 -107191550 - L1MA5 LINE L1 -32 6268 6171 7 984 533 303 90 69 chr3 52408393 52408410 -107191373 - B4A SINE B4 0 292 281 7 984 288 0 0 0 chr3 52408410 52408442 -107191341 + (CA)n Simple_repeat Simple_repeat 2 33 0 7 984 533 303 90 69 chr3 52408442 52408454 -107191329 - B4A SINE B4 -12 280 275 7 984 351 0 0 0 chr3 52408454 52408493 -107191290 + (TG)n Simple_repeat Simple_repeat 1 39 0 7 984 533 303 90 69 chr3 52408493 52408707 -107191076 - B4A SINE B4 -18 274 43 7 984 371 271 192 0 chr3 52408773 52408950 -107190833 - ID_B1 SINE B4 -9 215 5 7 984 231 232 0 51 chr3 52409665 52409724 -107190059 + ID4 SINE ID 14 69 -14 7 984 312 204 0 58 chr3 52409733 52409837 -107189946 + (CAAAC)n Simple_repeat Simple_repeat 1 98 0 7 984 3400 82 11 6 chr3 52409933 52410410 -107189373 - L1_Mus3 LINE L1 0 6638 6160 7 984 24 32 0 0 chr3 52410432 52410463 -107189320 + AT_rich Low_complexity Low_complexity 1 31 0 7 984 393 117 0 0 chr3 52410465 52410525 -107189258 + (TG)n Simple_repeat Simple_repeat 1 60 0 7 984 324 280 29 23 chr3 52410623 52410760 -107189023 - RSINE1 SINE B4 -151 141 1 7 984 371 266 37 61 chr3 52410910 52411074 -107188709 + MER3 DNA MER1_type 16 175 -34 7 984 280 318 56 0 chr3 52411234 52411341 -107188442 - Tigger5 DNA MER2_type -1 2405 2293 7 984 262 325 207 11 chr3 52411365 52411539 -107188244 - Tigger5 DNA MER2_type -2190 216 9 7 984 313 360 109 8 chr3 52411626 52411864 -107187919 - Charlie16a DNA MER1_type -20 322 61 7 984 3112 146 35 63 chr3 52412119 52412710 -107187073 + RMER15 LTR ERVL 1 575 0 7 984 614 244 7 15 chr3 52412769 52412906 -107186877 + B1_Mur1 SINE Alu 1 136 -13 7 984 751 88 46 17 chr3 52412946 52413119 -107186664 + GA-rich Low_complexity Low_complexity 3 180 0 7 984 734 260 50 0 chr3 52413397 52413578 -107186205 - ID_B1 SINE B4 -34 190 1 7 984 207 0 0 0 chr3 52413860 52413883 -107185900 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 7 984 263 96 19 0 chr3 52414368 52414420 -107185363 + (TTTG)n Simple_repeat Simple_repeat 2 54 0 7 984 403 308 67 20 chr3 52414982 52415131 -107184652 - B3A SINE B2 -42 156 1 7 984 666 88 0 130 chr3 52416504 52416635 -107183148 - B1_Mus2 SINE Alu 0 147 34 7 984 225 0 0 0 chr3 52416642 52416667 -107183116 + (T)n Simple_repeat Simple_repeat 1 25 0 7 984 370 320 72 54 chr3 52418955 52419106 -107180677 - MLT1D LTR MaLR -427 200 38 7 984 1185 131 91 10 chr3 52419106 52419314 -107180469 + URR1A DNA MER1_type 2 226 0 7 984 370 317 69 63 chr3 52419314 52419362 -107180421 - MLT1D LTR MaLR -461 44 2 7 984 2596 155 35 44 chr3 52419659 52420225 -107179558 + RLTR31_Mm LTR ERVK 1 561 0 7 984 583 279 21 81 chr3 52420686 52420861 -107178922 + MLT1D LTR MaLR 275 439 -66 7 984 645 275 7 0 chr3 52420861 52420999 -107178784 - B1_Mur1 SINE Alu -8 141 3 7 984 583 279 21 81 chr3 52420999 52421057 -107178726 + MLT1D LTR MaLR 440 494 -11 7 984 848 149 43 0 chr3 52423004 52423145 -107176638 + B1_Mus1 SINE Alu 1 147 -1 7 984 207 0 0 0 chr3 52423174 52423197 -107176586 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 7 984 892 161 12 0 chr3 52423743 52424066 -107175717 + (TCTA)n Simple_repeat Simple_repeat 1 327 0 7 984 331 346 31 6 chr3 52424190 52424353 -107175430 + (TGGA)n Simple_repeat Simple_repeat 3 169 0 7 984 253 325 170 30 chr3 52424575 52424740 -107175043 - MIRb SINE MIR -58 210 23 7 984 246 261 74 32 chr3 52424838 52424933 -107174850 + MIRb SINE MIR 96 194 -74 7 984 1271 269 112 12 chr3 52425077 52425487 -107174296 + Lx8 LINE L1 6879 7329 -144 7 984 593 256 39 44 chr3 52425514 52425732 -107174051 + B3A SINE B2 1 195 0 7 984 240 280 0 74 chr3 52425748 52425856 -107173927 + Lx8 LINE L1 7372 7471 -2 7 984 23 0 0 0 chr3 52426204 52426227 -107173556 + AT_rich Low_complexity Low_complexity 1 23 0 7 984 195 114 0 0 chr3 52427852 52427887 -107171896 + (TCTCTG)n Simple_repeat Simple_repeat 2 36 0 7 984 817 267 66 15 chr3 52427954 52428213 -107171570 - B4A SINE B4 -18 274 3 7 985 329 294 224 29 chr3 52429524 52429734 -107170049 + MLT1J1 LTR MaLR 55 305 -139 7 985 5074 192 69 49 chr3 52432078 52433119 -107166664 + RMER12 LTR ERVK 1 1057 -265 7 985 351 0 0 0 chr3 52433119 52433158 -107166625 + (GA)n Simple_repeat Simple_repeat 2 40 0 7 985 5074 192 69 49 chr3 52433158 52433177 -107166606 + RMER12 LTR ERVK 1058 1071 -251 7 985 294 29 0 0 chr3 52433177 52433212 -107166571 + (TG)n Simple_repeat Simple_repeat 2 36 0 7 985 5074 192 69 49 chr3 52433212 52433446 -107166337 + RMER12 LTR ERVK 1072 1322 0 7 985 251 228 0 0 chr3 52434531 52434588 -107165195 + T-rich Low_complexity Low_complexity 1 57 0 7 985 427 243 45 9 chr3 52438861 52438973 -107160810 - B3A SINE B2 -81 117 2 7 985 27 49 0 0 chr3 52439088 52439129 -107160654 + AT_rich Low_complexity Low_complexity 1 41 0 7 985 415 232 133 44 chr3 52439179 52439314 -107160469 - RSINE1 SINE B4 -1 164 18 7 985 363 293 0 0 chr3 52439313 52439388 -107160395 - RSINE1 SINE B4 -89 76 2 7 985 185 329 37 37 chr3 52439411 52439493 -107160290 - MIRc SINE MIR -63 205 124 7 985 236 250 134 42 chr3 52439582 52439724 -107160059 - Helitron2Na_Mam RC Helitron? -27 297 143 7 985 766 250 6 6 chr3 52439928 52440085 -107159698 + RSINE1 SINE B4 5 161 -4 7 985 320 315 19 64 chr3 52440147 52440303 -107159480 + RSINE1 SINE B4 16 164 -1 7 985 22 0 0 0 chr3 52440372 52440394 -107159389 + AT_rich Low_complexity Low_complexity 1 22 0 7 985 1187 123 37 5 chr3 52441347 52441535 -107158248 - B2_Mm2 SINE B2 0 195 2 7 985 270 16 0 101 chr3 52441658 52441727 -107158056 + (CAAAA)n Simple_repeat Simple_repeat 4 65 0 7 985 194 362 19 19 chr3 52444937 52445044 -107154739 - L3b LINE CR1 -200 282 176 7 985 201 121 0 0 chr3 52448694 52448727 -107151056 + (TCCC)n Simple_repeat Simple_repeat 3 35 0 7 985 181 330 20 60 chr3 52448997 52449097 -107150686 + MIRc SINE MIR 39 134 -134 8 985 1047 147 0 0 chr3 52449674 52449907 -107149876 + (TG)n Simple_repeat Simple_repeat 1 233 0 8 985 437 319 12 53 chr3 52449908 52450077 -107149706 - RSINE1 SINE B4 0 165 4 8 985 486 329 7 26 chr3 52450224 52450377 -107149406 - RSINE1 SINE B4 0 165 16 8 985 425 299 42 60 chr3 52452430 52452578 -107147205 - B4 SINE B4 -71 221 70 8 985 305 349 70 0 chr3 52452603 52452732 -107147051 - B4A SINE B4 -154 138 1 8 985 818 305 90 25 chr3 52453739 52454093 -107145690 + MLT1A0 LTR MaLR 5 361 -4 8 985 564 285 162 57 chr3 52454847 52455188 -107144595 - ORR1E LTR MaLR -2 377 1 8 985 468 0 0 0 chr3 52456399 52456451 -107143332 + (CA)n Simple_repeat Simple_repeat 2 53 0 8 985 222 118 0 0 chr3 52457499 52457533 -107142250 + (TTCC)n Simple_repeat Simple_repeat 3 36 0 8 985 460 235 25 34 chr3 52457533 52457652 -107142131 - B1F SINE Alu 0 149 32 8 985 638 211 209 7 chr3 52457753 52457906 -107141877 + B3 SINE B2 32 215 -1 8 985 384 235 105 40 chr3 52457976 52458100 -107141683 + MLT1B LTR MaLR 259 390 0 8 985 292 311 9 28 chr3 52458527 52458636 -107141147 - MIR SINE MIR -74 188 82 8 985 320 250 34 43 chr3 52460454 52460571 -107139212 - ORR1E LTR MaLR 0 359 244 8 985 230 135 0 0 chr3 52462601 52462638 -107137145 + RMER17C LTR ERVK 1 37 -373 8 985 2209 121 112 8 chr3 52462863 52463220 -107136563 + ORR1B1 LTR MaLR 1 394 0 8 985 378 0 0 0 chr3 52463925 52463967 -107135816 + (TG)n Simple_repeat Simple_repeat 2 43 0 8 985 225 0 0 0 chr3 52465025 52465050 -107134733 + (T)n Simple_repeat Simple_repeat 1 25 0 8 985 212 133 22 22 chr3 52465687 52465733 -107134050 + T-rich Low_complexity Low_complexity 2 47 0 8 985 685 214 36 0 chr3 52465833 52465973 -107133810 + B1_Mur4 SINE Alu 5 149 -1 8 985 182 156 31 0 chr3 52466905 52466937 -107132846 - MIRc SINE MIR -64 204 172 8 985 277 313 43 43 chr3 52468115 52468232 -107131551 - B1F1 SINE Alu -5 144 27 8 985 2378 166 58 48 chr3 52468232 52468751 -107131032 + RLTR28 LTR ERVL 1 524 0 8 985 277 313 43 43 chr3 52468751 52468773 -107131010 - B1F1 SINE Alu -123 26 5 8 985 441 0 0 0 chr3 52468947 52468996 -107130787 + (TG)n Simple_repeat Simple_repeat 1 49 0 8 985 328 185 0 174 chr3 52469022 52469120 -107130663 - B2_Mm2 SINE B2 -114 81 1 8 985 2479 173 72 42 chr3 52469626 52470170 -107129613 - RLTR20B2 LTR ERVK 0 560 1 8 985 264 203 17 17 chr3 52470171 52470231 -107129552 - MTEb LTR MaLR -10 369 310 8 985 1094 261 59 39 chr3 52470272 52470403 -107129380 - MTEb LTR MaLR -66 313 178 8 985 693 0 0 0 chr3 52470403 52470480 -107129303 + (TTCTC)n Simple_repeat Simple_repeat 4 80 0 8 985 1116 133 0 0 chr3 52470480 52470660 -107129123 + (TCCCC)n Simple_repeat Simple_repeat 1 180 0 8 985 1094 261 59 39 chr3 52470660 52470834 -107128949 - MTEb LTR MaLR -202 177 2 8 985 246 81 0 0 chr3 52471559 52471596 -107128187 + (CA)n Simple_repeat Simple_repeat 1 37 0 8 985 234 0 0 0 chr3 52472569 52472595 -107127188 + (TG)n Simple_repeat Simple_repeat 1 26 0 8 985 805 281 17 54 chr3 52472634 52472928 -107126855 - B4A SINE B4 -8 284 2 8 985 343 277 66 59 chr3 52473365 52473549 -107126234 - MIRc SINE MIR -45 223 50 8 985 259 378 29 62 chr3 52473599 52473808 -107125975 + MIRb SINE MIR 33 238 -30 8 985 181 366 46 72 chr3 52474145 52474451 -107125332 + L3 LINE CR1 3756 4053 -436 8 985 1067 328 82 29 chr3 52474754 52475206 -107124577 - MTE-int LTR MaLR -993 587 112 8 985 592 169 120 53 chr3 52476160 52476177 -107123606 - Lx2 LINE L1 -736 6272 6262 8 985 3487 144 16 16 chr3 52476177 52476736 -107123047 - Lx2B LINE L1 -1 6999 6441 8 985 603 169 120 53 chr3 52476736 52476868 -107122915 - Lx2 LINE L1 -733 6264 6113 8 985 326 316 154 6 chr3 52478435 52478591 -107121192 - MLT1B LTR MaLR -210 180 2 8 985 904 33 8 32 chr3 52478843 52478968 -107120815 + B1_Mus2 SINE Alu 26 147 0 8 985 277 344 101 62 chr3 52479107 52479315 -107120468 - MIRb SINE MIR -8 260 45 8 985 268 329 7 14 chr3 52479322 52479464 -107120319 + L1MC4 LINE L1 7699 7839 -203 8 985 399 369 0 32 chr3 52479650 52479662 -107120121 + ID_B1 SINE B4 70 135 -89 8 985 408 325 23 31 chr3 52479662 52479792 -107119991 + B1F2 SINE Alu 1 129 -20 8 985 399 369 0 32 chr3 52479792 52479804 -107119979 + ID_B1 SINE B4 136 218 -6 8 985 241 236 5 0 chr3 52479809 52479876 -107119907 + ID4 SINE ID 2 70 -13 8 985 430 306 29 6 chr3 52480132 52480303 -107119480 + MER53 DNA hAT 2 176 -17 8 985 327 331 88 0 chr3 52480678 52480814 -107118969 + MIR SINE MIR 108 255 -7 8 985 571 291 92 30 chr3 52481723 52482084 -107117699 + MLT1G LTR MaLR 2 394 -201 8 985 216 129 0 0 chr3 52482084 52482115 -107117668 + B3A SINE B2 49 79 -119 8 985 649 269 72 53 chr3 52482225 52482433 -107117350 + MLT1G LTR MaLR 357 568 -23 8 985 480 254 27 0 chr3 52482581 52482691 -107117092 + RSINE1 SINE B4 3 115 -50 8 985 961 171 32 28 chr3 52482692 52482909 -107116874 + Lx7 LINE L1 7478 7695 -1 8 985 535 251 39 68 chr3 52482936 52483141 -107116642 - RCHARR1 DNA MER1_type -470 504 306 8 985 497 265 89 58 chr3 52483321 52483545 -107116238 + RLTR14 LTR ERV1 152 382 0 8 985 513 289 101 0 chr3 52483588 52483747 -107116036 - RCHARR1 DNA MER1_type -720 254 80 8 985 211 231 0 0 chr3 52483878 52483917 -107115866 - RSINE1 SINE B4 -118 47 9 8 985 201 255 0 21 chr3 52484337 52484385 -107115398 + CT-rich Low_complexity Low_complexity 1 47 0 8 985 220 264 0 19 chr3 52485375 52485429 -107114354 + GA-rich Low_complexity Low_complexity 2 54 0 8 985 494 283 80 105 chr3 52485551 52485677 -107114106 + RSINE1 SINE B4 8 139 -26 8 985 1829 166 108 3 chr3 52485677 52485805 -107113978 + ORR1B2 LTR MaLR 1 153 -214 8 985 434 18 18 0 chr3 52485805 52485860 -107113923 + (TC)n Simple_repeat Simple_repeat 2 57 0 8 985 1829 166 108 3 chr3 52485860 52486063 -107113720 + ORR1B2 LTR MaLR 154 367 0 8 985 494 283 80 105 chr3 52486063 52486098 -107113685 + RSINE1 SINE B4 140 165 0 8 985 601 298 169 20 chr3 52486469 52486764 -107113019 + MLT1A LTR MaLR 18 356 -18 8 985 637 290 0 0 chr3 52487295 52487433 -107112350 + ID_B1 SINE B4 81 218 -6 8 985 424 347 90 63 chr3 52488354 52488689 -107111094 + MLT1E2 LTR MaLR 198 541 -86 8 985 204 97 0 0 chr3 52489069 52489100 -107110683 + (TG)n Simple_repeat Simple_repeat 1 31 0 8 985 1122 73 0 0 chr3 52489195 52489332 -107110451 - B1_Mus2 SINE Alu -10 137 1 8 985 496 276 92 6 chr3 52490608 52490772 -107109011 + B3A SINE B2 3 180 -18 8 985 285 98 0 0 chr3 52490780 52490821 -107108962 + (ATG)n Simple_repeat Simple_repeat 2 42 0 8 985 276 374 66 24 chr3 52491987 52492198 -107107585 - MIRb SINE MIR -23 245 26 8 985 997 89 13 13 chr3 52493125 52493284 -107106499 + (TTTC)n Simple_repeat Simple_repeat 2 160 0 8 985 277 265 24 24 chr3 52493332 52493417 -107106366 - PB1D10 SINE Alu 0 117 33 8 985 446 241 94 8 chr3 52493418 52493535 -107106248 + Lx8 LINE L1 7039 7165 -308 8 985 694 315 78 33 chr3 52493663 52493805 -107105978 - Lx8 LINE L1 -1659 5985 5817 8 985 558 0 0 0 chr3 52493805 52493867 -107105916 + (TCTA)n Simple_repeat Simple_repeat 3 64 0 8 985 1261 302 45 27 chr3 52493867 52494418 -107105365 - Lx8 LINE L1 -1633 5840 5261 8 985 915 187 0 0 chr3 52494423 52494662 -107105121 + (CA)n Simple_repeat Simple_repeat 1 239 0 8 985 378 0 0 0 chr3 52494671 52494713 -107105070 + (TG)n Simple_repeat Simple_repeat 2 43 0 8 985 1110 292 69 29 chr3 52494736 52495216 -107104567 - Lx8 LINE L1 -648 5199 4701 8 985 378 312 22 42 chr3 52495696 52495908 -107103875 - MIR SINE MIR -15 247 40 8 985 422 367 26 84 chr3 52495982 52496363 -107103420 - ORR1E LTR MaLR 0 359 1 8 985 255 357 69 17 chr3 52497286 52497460 -107102323 - MIR SINE MIR -43 219 37 8 985 224 279 25 25 chr3 52497561 52497642 -107102141 + CT-rich Low_complexity Low_complexity 2 82 0 8 985 689 269 88 0 chr3 52498364 52498557 -107101226 - B3 SINE B2 -4 212 3 8 985 411 73 0 0 chr3 52498700 52498755 -107101028 + (GA)n Simple_repeat Simple_repeat 2 56 0 8 985 646 239 14 0 chr3 52499314 52499452 -107100331 - B1_Mur2 SINE Alu -9 140 1 8 985 324 0 0 0 chr3 52499620 52499656 -107100127 + (TG)n Simple_repeat Simple_repeat 2 37 0 8 985 586 292 48 0 chr3 52499664 52499811 -107099972 - B3A SINE B2 -43 155 2 8 985 299 299 92 48 chr3 52500669 52500918 -107098865 + L1MB7 LINE L1 5869 6128 -56 1 985 213 121 0 0 chr3 52501244 52501277 -107098506 + (TTG)n Simple_repeat Simple_repeat 1 33 0 2 985 391 176 118 0 chr3 52502266 52502334 -107097449 + tRNA-Lys-AAG tRNA tRNA 1 76 0 3 985 1232 79 42 0 chr3 52502337 52502527 -107097256 - RLTR11A LTR ERVK 0 528 331 4 985 2337 244 48 22 chr3 52503087 52503526 -107096257 + RCHARR1 DNA MER1_type 40 501 -473 5 985 1673 199 172 95 chr3 52503526 52503571 -107096212 - MT2A LTR ERVL 0 533 489 6 985 247 49 24 24 chr3 52503571 52503613 -107096170 + (TCTA)n Simple_repeat Simple_repeat 1 42 0 7 985 1673 199 172 95 chr3 52503613 52504062 -107095721 - MT2A LTR ERVL -45 488 2 6 985 2337 244 48 22 chr3 52504062 52504288 -107095495 + RCHARR1 DNA MER1_type 502 722 -252 5 985 180 0 0 0 chr3 52504336 52504356 -107095427 + (A)n Simple_repeat Simple_repeat 1 20 0 8 985 633 296 17 17 chr3 52504383 52504558 -107095225 - B3A SINE B2 -22 176 2 9 985 599 281 96 8 chr3 52504558 52504774 -107095009 + RCHARR1 DNA MER1_type 726 963 -11 5 985 280 289 0 20 chr3 52505362 52505461 -107094322 - MER5A1 DNA MER1_type -4 162 66 1 985 231 307 154 60 chr3 52507305 52507361 -107092422 + MIRb SINE MIR 64 113 -155 1 985 1132 289 83 0 chr3 52507361 52507710 -107092073 + MTEb LTR MaLR 1 378 -1 1 985 231 307 154 60 chr3 52507710 52507802 -107091981 + MIRb SINE MIR 114 226 -42 1 985 400 264 117 70 chr3 52508135 52508306 -107091477 - MTEa LTR MaLR -200 179 1 1 985 510 298 168 58 chr3 52510706 52511152 -107088631 + MLT1H LTR MaLR 53 547 -2 1 985 230 303 110 29 chr3 52511742 52511878 -107087905 - ORR1E LTR MaLR -212 147 1 1 985 219 114 0 0 chr3 52513089 52513124 -107086659 + (T)n Simple_repeat Simple_repeat 1 35 0 1 985 344 241 43 43 chr3 52514320 52514437 -107085346 - L2a LINE L2 -29 3397 3281 1 985 310 65 0 42 chr3 52514494 52514542 -107085241 + HAL1-3A_ME LINE L1 1967 2012 -846 1 985 530 227 12 0 chr3 52514546 52514718 -107085065 + (CATA)n Simple_repeat Simple_repeat 3 176 0 1 985 526 240 3 11 chr3 52514709 52514998 -107084785 + (CA)n Simple_repeat Simple_repeat 1 286 0 2 985 1254 41 0 0 chr3 52515902 52516049 -107083734 + B1_Mm SINE Alu 1 147 0 2 985 261 0 0 0 chr3 52517576 52517605 -107082178 + (CA)n Simple_repeat Simple_repeat 1 29 0 2 985 225 0 0 0 chr3 52517868 52517893 -107081890 + (TGAA)n Simple_repeat Simple_repeat 1 25 0 2 985 285 51 0 0 chr3 52518691 52518730 -107081053 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 2 985 234 0 0 0 chr3 52518964 52518990 -107080793 + (TTCA)n Simple_repeat Simple_repeat 1 26 0 2 985 225 0 0 0 chr3 52518998 52519023 -107080760 + (CA)n Simple_repeat Simple_repeat 1 25 0 2 985 1109 95 0 0 chr3 52520088 52520235 -107079548 - B1_Mus2 SINE Alu 0 147 1 2 985 207 0 0 0 chr3 52520260 52520283 -107079500 + (TTG)n Simple_repeat Simple_repeat 2 24 0 2 985 218 293 45 68 chr3 52520866 52520954 -107078829 - MIRb SINE MIR -137 131 46 2 985 603 0 0 0 chr3 52521819 52521886 -107077897 + (TC)n Simple_repeat Simple_repeat 1 67 0 3 985 195 42 0 0 chr3 52522310 52522334 -107077449 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 3 985 180 0 0 0 chr3 52522729 52522749 -107077034 + (CTCTG)n Simple_repeat Simple_repeat 2 21 0 3 985 3431 137 29 15 chr3 52523562 52524156 -107075627 + RLTR25B LTR ERVK 1 602 -426 3 985 3028 34 5 0 chr3 52524170 52524554 -107075229 + MTA_Mm LTR MaLR 11 396 0 3 985 207 0 0 0 chr3 52525819 52525842 -107073941 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 3 985 3775 69 20 12 chr3 52526074 52526570 -107073213 - L1Md_F2 LINE L1 -1 6581 6082 3 985 1009 0 0 0 chr3 52526570 52526677 -107073106 - U6 snRNA snRNA 0 107 1 3 985 660 26 0 0 chr3 52526870 52526948 -107072835 + (GGA)n Simple_repeat Simple_repeat 1 78 0 3 985 486 336 56 26 chr3 52528288 52528591 -107071192 - MLT1M LTR MaLR -231 441 130 3 985 6096 80 33 5 chr3 52528913 52529732 -107070051 - Lx LINE L1 -76 6578 5737 4 985 292 292 11 11 chr3 52531132 52531222 -107068561 - B4A SINE B4 0 292 203 4 985 384 22 0 0 chr3 52531382 52531427 -107068356 + (CA)n Simple_repeat Simple_repeat 2 46 0 4 985 501 17 0 0 chr3 52531427 52531484 -107068299 + (GA)n Simple_repeat Simple_repeat 2 59 0 4 985 377 342 29 39 chr3 52531887 52532094 -107067689 - B4A SINE B4 -85 207 3 4 985 285 313 43 0 chr3 52533183 52533298 -107066485 + MIRb SINE MIR 45 164 -104 4 985 474 266 69 7 chr3 52534494 52534638 -107065145 + RSINE1 SINE B4 2 154 -11 4 985 1633 124 16 140 chr3 52535811 52536175 -107063608 - ORR1A3 LTR MaLR -8 319 1 4 985 213 284 68 0 chr3 52536515 52536603 -107063180 + MIR SINE MIR 126 219 -43 4 985 233 236 11 53 chr3 52537307 52537401 -107062382 + MLT1A LTR MaLR 74 163 -211 4 985 245 297 0 39 chr3 52537908 52537985 -107061798 - MTEa LTR MaLR -57 322 249 4 985 328 259 71 43 chr3 52538323 52538464 -107061319 + MIRb SINE MIR 103 247 -21 5 985 435 38 0 0 chr3 52538985 52539038 -107060745 + (GA)n Simple_repeat Simple_repeat 1 53 0 5 985 360 0 0 0 chr3 52539038 52539078 -107060705 + (GGA)n Simple_repeat Simple_repeat 2 41 0 5 985 1487 34 0 0 chr3 52539078 52539256 -107060527 + (GAA)n Simple_repeat Simple_repeat 3 180 0 5 985 190 100 19 39 chr3 52539477 52539529 -107060254 + T-rich Low_complexity Low_complexity 4 54 0 5 985 483 18 0 0 chr3 52539713 52539769 -107060014 + (TG)n Simple_repeat Simple_repeat 2 57 0 5 985 1062 240 14 78 chr3 52540235 52540529 -107059254 + MTEb LTR MaLR 49 323 -56 5 985 638 58 11 0 chr3 52540542 52540629 -107059154 + (TTCC)n Simple_repeat Simple_repeat 2 89 0 5 985 269 219 31 0 chr3 52540642 52540706 -107059077 + MTEb LTR MaLR 314 379 0 5 985 471 329 27 20 chr3 52540774 52540923 -107058860 - RSINE1 SINE B4 -2 163 14 5 985 790 201 212 0 chr3 52541080 52541264 -107058519 - URR1A DNA MER1_type 0 226 4 5 985 35 41 0 0 chr3 52541933 52541982 -107057801 + AT_rich Low_complexity Low_complexity 1 49 0 6 985 369 342 24 24 chr3 52543524 52543689 -107056094 - RSINE1 SINE B4 0 165 1 6 985 270 347 34 34 chr3 52543766 52543915 -107055868 + MIR SINE MIR 83 231 -31 6 985 184 353 24 0 chr3 52545527 52545612 -107054171 - MER5A DNA MER1_type -51 138 52 6 985 207 45 91 0 chr3 52546343 52546387 -107053396 + (CAAAA)n Simple_repeat Simple_repeat 2 49 0 6 985 603 21 0 96 chr3 52547715 52547872 -107051911 + (GGA)n Simple_repeat Simple_repeat 3 144 0 6 985 180 0 0 0 chr3 52548799 52548819 -107050964 + (TG)n Simple_repeat Simple_repeat 2 21 0 6 985 248 40 80 0 chr3 52549253 52549303 -107050480 + (TC)n Simple_repeat Simple_repeat 2 55 0 6 985 372 71 54 0 chr3 52549793 52549849 -107049934 - ORR1A4 LTR MaLR 0 329 271 6 985 1740 123 7 10 chr3 52549898 52550186 -107049597 - ORR1A4 LTR MaLR -42 287 1 6 985 254 320 97 53 chr3 52550290 52550766 -107049017 - L1MD3 LINE L1 -30 6149 5650 6 985 2270 110 26 0 chr3 52551170 52551515 -107048268 - MTC LTR MaLR -67 354 1 7 985 185 154 26 0 chr3 52551666 52551705 -107048078 + CT-rich Low_complexity Low_complexity 1 40 0 7 985 282 338 0 0 chr3 52551705 52551785 -107047998 - ID2 SINE ID -1 82 3 7 985 247 261 66 33 chr3 52551793 52551884 -107047899 - ID_B1 SINE B4 -2 222 129 7 985 247 306 137 0 chr3 52551884 52551917 -107047866 - B1F1 SINE Alu -2 147 7 7 985 705 151 0 0 chr3 52552239 52552405 -107047378 + CT-rich Low_complexity Low_complexity 1 166 0 7 985 972 187 92 15 chr3 52552601 52552807 -107046976 + URR1A DNA MER1_type 5 226 0 7 985 28 29 0 0 chr3 52552964 52552999 -107046784 + AT_rich Low_complexity Low_complexity 1 35 0 7 985 36 0 0 0 chr3 52553588 52553624 -107046159 + AT_rich Low_complexity Low_complexity 1 36 0 7 985 855 298 38 0 chr3 52554277 52554542 -107045241 + B4A SINE B4 3 277 -15 7 985 356 309 168 10 chr3 52555489 52555698 -107044085 + L3 LINE CR1 4247 4488 -1 8 985 1147 119 51 0 chr3 52557216 52557393 -107042390 - B2_Mm2 SINE B2 -9 186 1 8 985 610 238 28 0 chr3 52557431 52557574 -107042209 + RSINE1 SINE B4 2 148 -17 8 985 432 37 0 0 chr3 52557585 52557639 -107042144 + (CA)n Simple_repeat Simple_repeat 1 54 0 8 985 381 123 0 0 chr3 52557812 52557877 -107041906 + (TG)n Simple_repeat Simple_repeat 1 65 0 8 985 207 265 40 0 chr3 52559006 52559091 -107040692 - MIR SINE MIR -106 162 71 8 986 283 353 15 56 chr3 52559971 52560169 -107039614 + MIR SINE MIR 68 257 -5 8 986 195 224 20 20 chr3 52560215 52560265 -107039518 - MIRb SINE MIR -198 70 21 8 986 523 185 82 75 chr3 52560819 52560965 -107038818 + B1_Mus2 SINE Alu 1 147 0 8 986 1605 136 66 158 chr3 52561387 52561825 -107037958 + RMER10B LTR ERVL 1 398 0 8 986 216 0 0 0 chr3 52562112 52562136 -107037647 + (TTTTG)n Simple_repeat Simple_repeat 1 24 0 9 986 26 30 0 0 chr3 52562264 52562297 -107037486 + AT_rich Low_complexity Low_complexity 1 33 0 9 986 301 216 27 13 chr3 52562845 52562920 -107036863 + ID4 SINE ID 8 83 0 9 986 220 275 48 29 chr3 52562920 52562950 -107036833 + ID_B1 SINE B4 8 114 -110 9 986 220 285 138 56 chr3 52563452 52563612 -107036171 + MIR SINE MIR 20 192 -70 9 986 228 111 0 0 chr3 52564300 52564336 -107035447 + (TA)n Simple_repeat Simple_repeat 2 37 0 9 986 5640 55 4 1 chr3 52564512 52565210 -107034573 - L1_Mus1 LINE L1 0 6567 5868 9 986 239 97 0 0 chr3 52565210 52565241 -107034542 + L1_Mur1 LINE L1 4954 4984 -902 9 986 902 300 51 19 chr3 52565445 52565758 -107034025 - MLT1A1 LTR MaLR -37 371 49 9 986 741 267 19 46 chr3 52568702 52568965 -107030818 - MER2 DNA MER2_type -1 344 89 9 986 1230 281 57 25 chr3 52569326 52569728 -107030055 - MTD LTR MaLR 0 419 5 1 986 3249 219 61 107 chr3 52572482 52573552 -107026231 + RMER1B Other Other 45 1065 -1 1 986 1047 233 43 7 chr3 52574437 52574718 -107025065 + B4 SINE B4 5 292 0 1 986 237 341 15 8 chr3 52575356 52575489 -107024294 - MIR SINE MIR -70 192 59 1 986 2472 89 9 0 chr3 52576145 52576469 -107023314 + ORR1A2 LTR MaLR 1 327 0 1 986 1027 51 80 7 chr3 52578210 52578348 -107021435 + B1_Mus1 SINE Alu 1 148 0 1 986 219 294 0 0 chr3 52578620 52578671 -107021112 + (CACG)n Simple_repeat Simple_repeat 4 54 0 1 986 321 329 0 31 chr3 52578821 52578964 -107020819 - MLT1J LTR MaLR -312 200 31 1 986 311 356 99 46 chr3 52579565 52579827 -107019956 + MER2 DNA MER2_type 69 344 -1 1 986 21 0 0 0 chr3 52580578 52580599 -107019184 + AT_rich Low_complexity Low_complexity 1 21 0 1 986 207 0 0 0 chr3 52580926 52580949 -107018834 + (CCTG)n Simple_repeat Simple_repeat 1 23 0 1 986 719 156 0 0 chr3 52580951 52581073 -107018710 + ORR1C2 LTR MaLR 263 384 0 1 986 313 183 0 0 chr3 52582182 52582242 -107017541 + L1ME2z LINE L1 6380 6439 -5 1 986 819 228 69 5 chr3 52583535 52583738 -107016045 + B3 SINE B2 1 216 0 1 986 371 299 9 0 chr3 52585330 52585437 -107014346 + PB1D10 SINE Alu 5 112 -5 1 986 715 176 29 0 chr3 52586294 52586430 -107013353 + B1_Mur4 SINE Alu 6 145 -5 1 986 387 290 21 59 chr3 52586465 52586654 -107013129 + L1M2 LINE L1 5020 5199 -944 1 986 21 36 0 0 chr3 52586921 52586949 -107012834 + AT_rich Low_complexity Low_complexity 1 28 0 1 986 281 241 100 33 chr3 52587034 52587154 -107012629 - L1M2 LINE L1 -830 5313 5186 1 986 453 66 0 0 chr3 52588885 52588946 -107010837 + (CA)n Simple_repeat Simple_repeat 2 62 0 1 986 327 364 27 0 chr3 52589506 52589616 -107010167 + MER115 DNA Tip100 238 350 -343 1 986 23 54 0 0 chr3 52589895 52589932 -107009851 + AT_rich Low_complexity Low_complexity 1 37 0 1 986 378 0 0 0 chr3 52589970 52590012 -107009771 + (TG)n Simple_repeat Simple_repeat 2 43 0 1 986 2422 81 9 0 chr3 52590013 52590335 -107009448 - ORR1A2 LTR MaLR -2 325 1 1 986 327 321 25 12 chr3 52590435 52590596 -107009187 - MER97c DNA MER1_type? -408 682 520 1 986 390 289 92 104 chr3 52590605 52590946 -107008837 + MLT1B LTR MaLR 1 372 -18 1 986 349 293 84 76 chr3 52591134 52591396 -107008387 - MER97c DNA MER1_type? -758 332 69 1 986 879 177 48 6 chr3 52591639 52591804 -107007979 + B2_Mm2 SINE B2 5 176 -19 1 986 492 223 106 19 chr3 52591819 52591979 -107007804 + Lx5 LINE L1 6873 7046 -4 1 986 1643 242 27 21 chr3 52592935 52593310 -107006473 - Lx6 LINE L1 -6 7454 7078 1 986 7379 149 53 10 chr3 52593308 52593692 -107006091 - L1_Mur3 LINE L1 -651 5229 4828 1 986 195 42 0 0 chr3 52593692 52593716 -107006067 + (CAAA)n Simple_repeat Simple_repeat 3 26 0 1 986 7379 149 53 10 chr3 52593716 52594668 -107005115 - L1_Mur3 LINE L1 -1053 4827 3835 1 986 483 73 0 0 chr3 52594850 52594918 -107004865 + (TG)n Simple_repeat Simple_repeat 1 68 0 1 986 1199 56 0 0 chr3 52595393 52595536 -107004247 - B1_Mm SINE Alu -1 146 4 1 986 768 244 99 0 chr3 52595699 52595920 -107003863 + B4A SINE B4 41 283 -9 1 986 236 311 100 8 chr3 52598000 52598120 -107001663 - LTR40b LTR ERVL -30 432 302 1 986 1468 49 22 5 chr3 52598783 52598968 -107000815 + B2_Mm2 SINE B2 1 188 -7 1 986 185 371 48 48 chr3 52599843 52599889 -106999894 + L2a LINE L2 2971 3014 -412 1 986 2162 104 0 109 chr3 52599889 52600255 -106999528 - ORR1A3 LTR MaLR 0 326 1 1 986 185 371 48 48 chr3 52600255 52600375 -106999408 + L2a LINE L2 3015 3137 -289 1 986 1683 73 20 4 chr3 52600687 52600934 -106998849 + L1_Mus3 LINE L1 6375 6625 -13 1 986 240 64 42 21 chr3 52600937 52600985 -106998798 + (TA)n Simple_repeat Simple_repeat 1 49 0 1 986 284 211 25 75 chr3 52601011 52601170 -106998613 + (TATAA)n Simple_repeat Simple_repeat 4 154 0 1 986 345 24 0 0 chr3 52601905 52601947 -106997836 + (TG)n Simple_repeat Simple_repeat 2 43 0 1 986 241 328 0 0 chr3 52602109 52602176 -106997607 + CT-rich Low_complexity Low_complexity 5 71 0 1 986 359 321 66 48 chr3 52602751 52603130 -106996653 - Charlie7 DNA MER1_type -1941 671 286 1 986 557 324 11 35 chr3 52603605 52603887 -106995896 + L1ME2 LINE L1 5867 6141 -23 1 986 255 256 12 47 chr3 52604389 52604475 -106995308 - MIRb SINE MIR -103 165 83 1 986 1342 158 45 4 chr3 52605862 52606129 -106993654 + RMER15 LTR ERVL 1 278 -297 1 986 1470 151 38 8 chr3 52606221 52606488 -106993295 - RMER15 LTR ERVL -3 572 298 1 986 395 353 35 12 chr3 52608442 52608611 -106991172 + B4A SINE B4 2 174 -118 1 986 216 125 47 0 chr3 52609028 52609092 -106990691 + T-rich Low_complexity Low_complexity 2 68 0 1 986 36508 39 3 1 chr3 52609730 52615330 -106984453 - L1Md_F2 LINE L1 -3 6582 871 1 986 336 241 22 22 chr3 52616066 52616155 -106983628 + PB1D10 SINE Alu 27 115 -2 1 986 5324 72 49 63 chr3 52616299 52617010 -106982773 - L1VL2 LINE L1 -1789 1826 1090 1 986 599 70 0 0 chr3 52617010 52617096 -106982687 - B1_Mus2 SINE Alu -1 146 61 1 986 5324 72 49 63 chr3 52617096 52617820 -106981963 - L1VL2 LINE L1 -1789 1089 338 1 986 387 0 0 0 chr3 52618570 52618613 -106981170 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 986 228 301 12 35 chr3 52619979 52620065 -106979718 - MLT1I LTR MaLR -10 401 318 1 986 423 0 0 0 chr3 52620549 52620596 -106979187 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 986 864 198 0 113 chr3 52620731 52620953 -106978830 - URR1B DNA MER1_type -3 222 26 1 986 946 186 76 87 chr3 52620953 52621229 -106978554 - Lx9 LINE L1 -91 7553 7281 1 986 188 67 33 0 chr3 52621310 52621340 -106978443 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 1 986 292 270 65 8 chr3 52622273 52622393 -106977390 + MLT1E2 LTR MaLR 513 625 -2 1 986 280 306 42 42 chr3 52622705 52622920 -106976863 + L1MEg LINE L1 752 966 -5118 1 986 201 147 0 0 chr3 52623249 52623283 -106976500 + (T)n Simple_repeat Simple_repeat 1 34 0 1 986 222 246 0 0 chr3 52623488 52623549 -106976234 + (CATA)n Simple_repeat Simple_repeat 4 64 0 1 986 291 378 40 0 chr3 52623557 52623575 -106976208 + ID_B1 SINE B4 70 112 -112 1 986 306 296 57 0 chr3 52623575 52623663 -106976120 + B1F1 SINE Alu 8 100 -49 1 986 291 378 40 0 chr3 52623663 52623705 -106976078 + ID_B1 SINE B4 113 223 -1 1 986 320 293 94 41 chr3 52624228 52624399 -106975384 + L1MC LINE L1 5363 5542 -2340 1 986 1184 144 16 21 chr3 52624420 52624612 -106975171 - B2_Mm2 SINE B2 -3 192 2 1 986 1100 49 7 0 chr3 52625037 52625180 -106974603 + (GGAGA)n Simple_repeat Simple_repeat 3 146 0 1 986 198 0 0 0 chr3 52625853 52625875 -106973908 + (T)n Simple_repeat Simple_repeat 1 22 0 1 986 189 163 0 0 chr3 52628122 52628171 -106971612 + A-rich Low_complexity Low_complexity 1 49 0 1 986 477 295 209 5 chr3 52628757 52628948 -106970835 + B4A SINE B4 46 275 -17 1 986 416 123 14 0 chr3 52629034 52629107 -106970676 + (AGGGGG)n Simple_repeat Simple_repeat 1 74 0 1 986 322 294 97 10 chr3 52629478 52629581 -106970202 - PB1 SINE Alu -3 124 13 1 986 380 130 14 0 chr3 52629780 52629849 -106969934 + (GGGA)n Simple_repeat Simple_repeat 3 72 0 1 986 789 79 15 73 chr3 52630735 52630872 -106968911 + B1_Mur4 SINE Alu 20 148 -2 1 986 832 104 15 0 chr3 52630882 52631016 -106968767 + (GA)n Simple_repeat Simple_repeat 2 137 0 1 986 195 69 0 0 chr3 52634028 52634057 -106965726 + (CTTG)n Simple_repeat Simple_repeat 1 29 0 1 986 343 353 75 53 chr3 52634108 52634389 -106965394 - B4 SINE B4 -5 287 1 1 986 258 354 18 72 chr3 52634673 52634895 -106964888 - L2a LINE L2 -8 3418 3209 1 986 513 0 0 0 chr3 52636285 52636342 -106963441 + (TC)n Simple_repeat Simple_repeat 1 57 0 1 986 279 0 0 0 chr3 52636342 52636372 -106963411 + (CA)n Simple_repeat Simple_repeat 1 31 0 1 986 753 302 93 63 chr3 52637365 52637741 -106962042 - MLT1F2 LTR MaLR 0 560 172 1 986 1672 167 111 12 chr3 52637741 52638075 -106961708 - ORR1B2 LTR MaLR 0 367 1 1 986 753 302 93 63 chr3 52638075 52638108 -106961675 - MLT1F2 LTR MaLR -389 171 139 1 986 1843 195 78 5 chr3 52638121 52638507 -106961276 - MTD LTR MaLR -5 414 1 1 986 310 264 141 23 chr3 52638507 52638632 -106961151 - MLT1F2 LTR MaLR -420 140 1 1 986 329 135 0 0 chr3 52638661 52638713 -106961070 + HAL1-3A_ME LINE L1 1967 2018 -840 1 986 248 188 0 15 chr3 52638713 52638778 -106961005 + (CA)n Simple_repeat Simple_repeat 1 64 0 1 986 292 292 90 63 chr3 52640401 52640624 -106959159 + Charlie7 DNA MER1_type 1736 1964 -648 1 986 395 222 32 43 chr3 52643311 52643405 -106956378 + PB1D7 SINE Alu 21 113 -7 1 986 486 180 225 0 chr3 52645823 52645934 -106953849 - B1_Mus1 SINE Alu -8 140 5 1 986 414 274 63 13 chr3 52645943 52646102 -106953681 - MER2 DNA MER2_type -71 274 108 1 986 262 237 258 17 chr3 52647685 52647805 -106951978 + B1F SINE Alu 1 149 0 1 986 322 276 77 35 chr3 52647832 52648001 -106951782 - MER33 DNA MER1_type -144 180 5 1 986 222 333 0 0 chr3 52648748 52648811 -106950972 + (CA)n Simple_repeat Simple_repeat 2 64 0 1 986 304 104 0 20 chr3 52648817 52648866 -106950917 + HAL1-3A_ME LINE L1 1975 2022 -836 1 986 215 267 0 0 chr3 52649229 52649289 -106950494 + (CAGC)n Simple_repeat Simple_repeat 2 61 0 1 986 379 276 41 0 chr3 52649403 52649501 -106950282 - PB1D10 SINE Alu -15 102 1 1 986 804 209 50 0 chr3 52649544 52649726 -106950057 - B4A SINE B4 -98 194 4 1 986 3334 51 2 0 chr3 52649833 52650228 -106949555 + MTA_Mm LTR MaLR 1 396 0 1 986 8057 62 9 69 chr3 52650228 52651396 -106948387 + MTA_Mm-int LTR MaLR 1 1098 0 1 986 3480 18 10 0 chr3 52651396 52651788 -106947995 + MTA_Mm LTR MaLR 1 396 0 1 986 627 26 0 0 chr3 52652851 52652928 -106946855 + (TG)n Simple_repeat Simple_repeat 2 78 0 1 986 342 288 119 28 chr3 52653074 52653292 -106946491 + MER121 Unknown Unknown 12 249 -163 2 986 198 240 0 0 chr3 52654338 52654388 -106945395 + (CA)n Simple_repeat Simple_repeat 1 50 0 2 986 579 271 6 24 chr3 52655133 52655303 -106944480 - B3A SINE B2 -8 190 24 2 986 378 0 0 0 chr3 52656278 52656320 -106943463 + (TTTA)n Simple_repeat Simple_repeat 2 43 0 2 986 489 34 0 0 chr3 52656924 52656983 -106942800 + (CA)n Simple_repeat Simple_repeat 1 59 0 2 986 477 0 0 0 chr3 52657407 52657460 -106942323 + (TG)n Simple_repeat Simple_repeat 1 53 0 2 986 22 0 0 0 chr3 52657678 52657700 -106942083 + AT_rich Low_complexity Low_complexity 1 22 0 2 986 189 0 0 0 chr3 52657971 52657992 -106941791 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 2 986 2335 125 3 8 chr3 52658310 52658688 -106941095 + RLTR14 LTR ERV1 7 382 0 2 986 239 266 0 15 chr3 52658730 52658795 -106940988 - MER91B DNA Tip100 -60 130 67 2 986 256 259 82 18 chr3 52658918 52659028 -106940755 + HAL1 LINE L1 52 168 -2339 2 986 1256 162 13 55 chr3 52659109 52659344 -106940439 - URR1B DNA MER1_type 0 225 1 2 986 277 305 75 52 chr3 52659722 52660030 -106939753 + HAL1 LINE L1 784 1098 -1409 2 986 365 300 20 0 chr3 52660124 52660224 -106939559 + U1 snRNA snRNA 1 102 -63 2 986 22 35 0 0 chr3 52660805 52660834 -106938949 + AT_rich Low_complexity Low_complexity 1 29 0 2 986 1566 138 59 92 chr3 52661607 52662031 -106937752 - RMER17C LTR ERVK 0 410 1 2 986 207 0 0 0 chr3 52663665 52663688 -106936095 + (CAAA)n Simple_repeat Simple_repeat 4 26 0 2 986 207 272 19 40 chr3 52664560 52664665 -106935118 + MIRm SINE MIR 61 156 -106 2 986 499 212 152 52 chr3 52665801 52666070 -106933713 - RMER20B LTR ERVK -235 392 97 2 986 320 287 10 0 chr3 52666132 52666233 -106933550 - PB1D10 SINE Alu -13 104 3 2 986 219 330 10 0 chr3 52666145 52666245 -106933538 - ID_B1 SINE B4 -52 172 72 2 986 183 100 0 0 chr3 52666577 52666607 -106933176 + (TTTTTG)n Simple_repeat Simple_repeat 2 31 0 2 986 561 136 0 0 chr3 52666977 52667080 -106932703 + (TG)n Simple_repeat Simple_repeat 1 103 0 2 986 408 301 52 21 chr3 52667192 52667347 -106932436 + B3 SINE B2 1 160 -38 2 986 181 331 110 22 chr3 52667529 52667665 -106932118 - L2c LINE L2 -329 3058 2911 2 986 255 31 0 0 chr3 52667805 52667837 -106931946 + (CAGAGA)n Simple_repeat Simple_repeat 4 35 0 2 986 414 0 0 0 chr3 52667847 52667893 -106931890 + (TA)n Simple_repeat Simple_repeat 1 46 0 2 986 526 312 0 18 chr3 52667999 52668162 -106931621 - Lx8 LINE L1 -560 6913 6754 2 986 1378 238 105 44 chr3 52668166 52668563 -106931220 + Lx8 LINE L1 6937 7331 -142 2 986 303 28 0 0 chr3 52668563 52668599 -106931184 + (TG)n Simple_repeat Simple_repeat 2 37 0 2 986 1378 238 105 44 chr3 52668599 52668706 -106931077 + Lx8 LINE L1 7332 7471 -2 2 986 1488 213 20 26 chr3 52668728 52669071 -106930712 - Lx7 LINE L1 0 7696 7356 2 986 26 0 0 0 chr3 52669109 52669135 -106930648 + AT_rich Low_complexity Low_complexity 1 26 0 2 986 1009 86 0 0 chr3 52669155 52669294 -106930489 + B1_Mm SINE Alu 9 147 0 2 986 1235 236 53 10 chr3 52669341 52669640 -106930143 - Lx7 LINE L1 -354 7342 7031 2 986 428 266 0 84 chr3 52669664 52669783 -106930000 - PB1D10 SINE Alu -7 110 2 2 986 189 0 0 0 chr3 52669783 52669804 -106929979 + (A)n Simple_repeat Simple_repeat 1 21 0 2 986 23 0 0 0 chr3 52670030 52670053 -106929730 + AT_rich Low_complexity Low_complexity 1 23 0 2 986 331 260 123 103 chr3 52671841 52671945 -106927838 - RLTR20D LTR ERVK 0 568 479 2 986 549 0 0 0 chr3 52671945 52672006 -106927777 + (CA)n Simple_repeat Simple_repeat 2 62 0 2 986 331 260 123 103 chr3 52672006 52672047 -106927736 - RLTR20D LTR ERVK -90 478 420 2 986 751 168 138 66 chr3 52672046 52672261 -106927522 - RLTR20D LTR ERVK -315 253 5 2 986 217 16 108 15 chr3 52672280 52672289 -106927494 + (TTTG)n Simple_repeat Simple_repeat 1 8 0 2 986 438 20 0 0 chr3 52672289 52672340 -106927443 + (CTTTG)n Simple_repeat Simple_repeat 2 52 0 2 986 217 16 108 15 chr3 52672340 52672395 -106927388 + (TTTG)n Simple_repeat Simple_repeat 3 64 0 2 986 864 124 0 0 chr3 52672400 52672529 -106927254 - B1_Mur3 SINE Alu 0 149 21 2 986 936 85 174 13 chr3 52672645 52672800 -106926983 - B2_Mm2 SINE B2 -14 181 2 2 986 1157 75 0 0 chr3 52673010 52673156 -106926627 - B1_Mm SINE Alu 0 147 2 2 986 591 244 0 0 chr3 52673747 52673870 -106925913 + RSINE1 SINE B4 2 124 -41 2 986 1241 48 0 0 chr3 52673961 52674107 -106925676 + B1_Mus2 SINE Alu 2 147 0 2 986 269 210 0 0 chr3 52674107 52674169 -106925614 + A-rich Low_complexity Low_complexity 1 62 0 2 986 24 0 0 0 chr3 52674298 52674322 -106925461 + AT_rich Low_complexity Low_complexity 1 24 0 2 986 276 264 8 23 chr3 52675006 52675138 -106924645 + T-rich Low_complexity Low_complexity 2 131 0 2 986 507 275 43 54 chr3 52675926 52676276 -106923507 + RLTR15 LTR ERVK 1 346 -13 2 986 23 0 0 0 chr3 52676890 52676913 -106922870 + AT_rich Low_complexity Low_complexity 1 23 0 2 986 1803 136 21 0 chr3 52678404 52678691 -106921092 - MTC LTR MaLR -128 293 1 2 986 207 0 0 0 chr3 52678728 52678751 -106921032 + (CA)n Simple_repeat Simple_repeat 2 24 0 2 986 429 135 0 0 chr3 52678751 52678840 -106920943 + (GA)n Simple_repeat Simple_repeat 1 89 0 2 986 477 0 0 0 chr3 52679300 52679353 -106920430 + (TG)n Simple_repeat Simple_repeat 2 54 0 2 986 533 259 164 80 chr3 52680416 52680880 -106918903 + MER34 LTR ERV1 1 544 -43 2 986 1046 239 82 79 chr3 52681278 52681656 -106918127 - MTE2a LTR MaLR 0 379 1 2 986 213 39 0 0 chr3 52682122 52682148 -106917635 + (CACCC)n Simple_repeat Simple_repeat 5 30 0 2 986 198 0 0 0 chr3 52683470 52683492 -106916291 + (A)n Simple_repeat Simple_repeat 1 22 0 2 986 1035 106 141 0 chr3 52684200 52684398 -106915385 + Lx2A1 LINE L1 6780 7005 -3 2 986 214 204 0 22 chr3 52684502 52684547 -106915236 + (TCTG)n Simple_repeat Simple_repeat 1 44 0 2 986 240 200 0 0 chr3 52684547 52684597 -106915186 + (TCCA)n Simple_repeat Simple_repeat 3 52 0 2 986 953 152 0 17 chr3 52684604 52684785 -106914998 + CT-rich Low_complexity Low_complexity 1 178 0 2 986 258 278 31 10 chr3 52684841 52684939 -106914844 - L1MC4 LINE L1 -190 7852 7753 2 986 6002 19 0 0 chr3 52686982 52687662 -106912121 - L1Md_T LINE L1 -83 5800 5121 2 986 7438 7 0 0 chr3 52687662 52688474 -106911309 + L1Md_T LINE L1 5771 6582 0 2 986 1035 182 36 5 chr3 52689408 52689601 -106910182 + B3 SINE B2 1 199 -17 2 986 284 283 0 62 chr3 52689691 52689804 -106909979 - L1MB4 LINE L1 -2245 4502 4397 2 986 242 324 32 60 chr3 52690170 52690387 -106909396 - L1MB4 LINE L1 -2757 3990 3780 2 986 665 214 0 14 chr3 52690395 52690537 -106909246 - B1F SINE Alu -1 148 9 2 123 650 286 150 46 chr3 52690549 52691882 -106907901 - L1MB4 LINE L1 -2981 3760 2283 2 987 406 323 0 0 chr3 52692007 52692134 -106907649 - B1F SINE Alu -17 132 6 2 987 2644 147 52 12 chr3 52692237 52692733 -106907050 - RMER20A LTR ERVK 0 516 1 2 987 254 296 110 9 chr3 52692735 52692844 -106906939 - L1MB4 LINE L1 -4731 2018 1899 2 987 333 0 0 0 chr3 52692863 52692900 -106906883 + (TG)n Simple_repeat Simple_repeat 1 37 0 2 987 1182 269 78 66 chr3 52692979 52693721 -106906062 - L1MB4 LINE L1 -4880 1727 981 2 987 183 42 0 0 chr3 52693721 52693745 -106906038 + (TTG)n Simple_repeat Simple_repeat 2 25 0 2 987 1182 269 78 66 chr3 52693745 52693771 -106906012 - L1MB4 LINE L1 -5627 980 950 2 987 213 205 0 0 chr3 52693893 52693932 -106905851 + (CA)n Simple_repeat Simple_repeat 2 40 0 2 987 299 315 76 68 chr3 52694137 52694386 -106905397 - L1MB4 LINE L1 -6042 565 315 2 987 229 318 43 76 chr3 52694560 52694652 -106905131 - PB1D10 SINE Alu -7 110 22 2 987 416 136 0 11 chr3 52696771 52696860 -106902923 + (CA)n Simple_repeat Simple_repeat 1 88 0 2 987 761 158 0 9 chr3 52696872 52697100 -106902683 + (CA)n Simple_repeat Simple_repeat 1 225 0 2 987 250 288 50 0 chr3 52697219 52697299 -106902484 - MIRb SINE MIR -92 176 93 2 987 221 0 35 0 chr3 52697527 52697556 -106902227 + (TAAAA)n Simple_repeat Simple_repeat 1 30 0 2 987 225 0 0 0 chr3 52697997 52698022 -106901761 + (TTCA)n Simple_repeat Simple_repeat 1 25 0 2 987 594 264 0 14 chr3 52698027 52698173 -106901610 - ID_B1 SINE B4 0 224 81 2 987 419 0 20 0 chr3 52699173 52699224 -106900559 + (TGAA)n Simple_repeat Simple_repeat 2 53 0 2 987 315 0 0 0 chr3 52700039 52700074 -106899709 + (TTG)n Simple_repeat Simple_repeat 2 36 0 2 987 226 352 164 6 chr3 52701630 52701807 -106897976 - LTR88c LTR Genie? -562 300 96 2 987 21 57 0 0 chr3 52702512 52702547 -106897236 + AT_rich Low_complexity Low_complexity 1 35 0 2 987 289 191 0 14 chr3 52702695 52702764 -106897019 - L1_Rod LINE L1 -516 5331 5264 2 987 1109 124 70 0 chr3 52702764 52702950 -106896833 - Lx LINE L1 0 6654 6456 2 987 273 298 93 28 chr3 52702955 52703062 -106896721 - B3A SINE B2 -84 114 1 2 987 26 0 0 0 chr3 52703063 52703089 -106896694 + AT_rich Low_complexity Low_complexity 1 26 0 2 987 194 62 31 0 chr3 52703454 52703486 -106896297 + (TTTA)n Simple_repeat Simple_repeat 1 33 0 2 987 321 169 0 0 chr3 52704841 52704924 -106894859 + (TCTG)n Simple_repeat Simple_repeat 2 84 0 2 987 189 0 0 0 chr3 52705034 52705055 -106894728 + (CAAAAA)n Simple_repeat Simple_repeat 4 24 0 2 987 191 105 0 120 chr3 52705428 52705536 -106894247 + T-rich Low_complexity Low_complexity 2 96 0 2 987 439 352 85 18 chr3 52706140 52706481 -106893302 - MLT1L LTR MaLR -29 581 218 2 987 225 339 48 16 chr3 52706955 52707081 -106892702 - L2 LINE L2 -1437 1982 1853 2 987 210 378 52 38 chr3 52707139 52707483 -106892300 - L2 LINE L2 -1690 1729 1381 2 987 285 313 151 18 chr3 52707875 52708093 -106891690 + MIR SINE MIR 6 252 -10 2 987 1158 122 0 0 chr3 52708958 52709138 -106890645 + (TTC)n Simple_repeat Simple_repeat 1 180 0 2 987 385 264 134 56 chr3 52709140 52709409 -106890374 + L1ME2z LINE L1 6150 6439 -5 2 987 239 247 247 0 chr3 52709779 52709856 -106889927 - MARNA DNA Mariner -209 377 282 2 987 588 95 0 0 chr3 52710370 52710454 -106889329 + (TTCC)n Simple_repeat Simple_repeat 1 84 0 2 987 388 266 152 25 chr3 52712218 52712415 -106887368 - RMER15 LTR ERVL -13 562 341 2 987 226 200 0 156 chr3 52712934 52713011 -106886772 - MTEa LTR MaLR -3 376 312 2 987 759 209 120 123 chr3 52713062 52713229 -106886554 + MTE2a LTR MaLR 13 181 -198 2 987 666 0 0 0 chr3 52713229 52713303 -106886480 + (GA)n Simple_repeat Simple_repeat 1 74 0 2 987 759 209 120 123 chr3 52713303 52713468 -106886315 + MTE2a LTR MaLR 182 343 -36 2 987 3212 164 76 19 chr3 52713476 52714054 -106885729 - RMER19C LTR ERVK 0 611 1 3 987 1256 287 16 36 chr3 52714057 52714444 -106885339 - Lx8 LINE L1 -161 7312 6934 3 987 42072 10 0 2 chr3 52714797 52722395 -106877388 - L1Md_A LINE L1 0 6582 1 3 987 227 203 16 0 chr3 52722615 52722679 -106877104 + (TG)n Simple_repeat Simple_repeat 2 66 0 3 987 528 284 64 64 chr3 52722767 52722940 -106876843 - B3A SINE B2 -16 182 10 3 987 527 312 58 49 chr3 52722938 52723164 -106876619 - B4 SINE B4 -64 228 1 3 987 305 353 58 34 chr3 52723847 52724055 -106875728 - Tigger5 DNA MER2_type -2193 213 1 3 987 522 0 0 0 chr3 52724072 52724130 -106875653 + (CATCT)n Simple_repeat Simple_repeat 4 61 0 3 987 6273 71 1 1 chr3 52724214 52725021 -106874762 - L1_Mus1 LINE L1 -1 6566 5760 3 987 4294 32 2 0 chr3 52725021 52725519 -106874264 + L1_Mus1 LINE L1 5224 5722 -161 3 987 236 214 13 103 chr3 52726278 52726356 -106873427 + MTE2a LTR MaLR 289 359 -20 3 987 362 336 37 22 chr3 52726415 52726549 -106873234 + MIRb SINE MIR 30 165 -103 3 987 1371 88 15 20 chr3 52727058 52727254 -106872529 + B2_Mm2 SINE B2 1 195 0 3 987 943 228 167 9 chr3 52727284 52727620 -106872163 - MTD LTR MaLR 0 419 31 3 987 323 262 153 60 chr3 52728154 52728304 -106871479 + RSINE1 SINE B4 2 165 0 3 987 495 0 0 0 chr3 52728330 52728385 -106871398 + (GA)n Simple_repeat Simple_repeat 2 56 0 3 987 508 191 168 14 chr3 52729291 52729434 -106870349 + B3 SINE B2 52 216 0 3 987 298 77 0 0 chr3 52729791 52729830 -106869953 + (GGAA)n Simple_repeat Simple_repeat 1 39 0 3 987 479 123 0 12 chr3 52729830 52729912 -106869871 + (GA)n Simple_repeat Simple_repeat 2 82 0 3 987 1424 55 11 6 chr3 52730171 52730352 -106869431 + B2_Mm2 SINE B2 4 185 -10 3 987 180 0 0 0 chr3 52730353 52730373 -106869410 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 3 987 241 242 16 0 chr3 52730524 52730586 -106869197 + Arthur1C DNA Tip100 298 360 -3 3 987 416 310 131 21 chr3 52732979 52733170 -106866613 - ID_B1 SINE B4 -10 214 3 3 987 597 34 34 0 chr3 52733979 52734067 -106865716 + (TC)n Simple_repeat Simple_repeat 2 92 0 3 987 216 0 0 0 chr3 52734067 52734090 -106865693 + (TG)n Simple_repeat Simple_repeat 1 24 0 3 987 441 0 0 0 chr3 52734720 52734769 -106865014 + (CAT)n Simple_repeat Simple_repeat 3 51 0 3 987 701 177 27 54 chr3 52735548 52735697 -106864086 + B1_Mur1 SINE Alu 3 147 -2 3 987 359 311 70 79 chr3 52735790 52736132 -106863651 - ORR1E LTR MaLR 0 359 21 3 987 442 353 24 24 chr3 52739127 52739336 -106860447 + MLT1D LTR MaLR 1 209 -296 3 987 682 275 77 27 chr3 52739422 52739721 -106860062 - L1MD2 LINE L1 -525 5834 5521 3 987 501 219 130 33 chr3 52740094 52740278 -106859505 - L1MD2 LINE L1 -1458 4688 4487 3 987 642 229 14 27 chr3 52740279 52740427 -106859356 - B1_Mur2 SINE Alu -1 148 3 3 987 306 327 38 25 chr3 52740436 52740593 -106859190 + B4A SINE B4 128 286 -6 3 987 206 139 28 0 chr3 52740597 52740633 -106859150 + (CA)n Simple_repeat Simple_repeat 1 37 0 3 987 351 0 0 0 chr3 52740633 52740672 -106859111 + (GA)n Simple_repeat Simple_repeat 2 40 0 3 987 282 116 0 0 chr3 52742122 52742165 -106857618 + (TCTCCC)n Simple_repeat Simple_repeat 1 43 0 3 987 216 0 0 0 chr3 52742340 52742364 -106857419 + (TG)n Simple_repeat Simple_repeat 2 25 0 3 987 468 0 0 0 chr3 52742418 52742470 -106857313 + (CA)n Simple_repeat Simple_repeat 1 52 0 3 987 213 271 34 0 chr3 52742968 52743027 -106856756 + CT-rich Low_complexity Low_complexity 3 63 0 3 987 577 156 108 15 chr3 52743225 52743355 -106856428 - MTC LTR MaLR 0 421 280 3 987 788 104 75 100 chr3 52743357 52743517 -106856266 - MTC LTR MaLR -265 156 1 3 987 339 152 63 54 chr3 52743816 52743927 -106855856 - Lx5 LINE L1 0 7050 6939 3 987 231 36 0 0 chr3 52745539 52745567 -106854216 + (CA)n Simple_repeat Simple_repeat 1 28 0 3 987 761 258 22 35 chr3 52746305 52746534 -106853249 - L1M2 LINE L1 -2424 3719 3494 3 987 387 0 0 0 chr3 52746585 52746628 -106853155 + (CA)n Simple_repeat Simple_repeat 1 43 0 3 987 888 148 0 0 chr3 52746851 52746986 -106852797 + B1_Mus2 SINE Alu 1 135 -12 3 987 207 0 0 0 chr3 52746989 52747012 -106852771 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 3 987 241 265 211 37 chr3 52747153 52747314 -106852469 + MER20 DNA MER1_type 31 219 0 3 987 203 204 0 18 chr3 52747326 52747381 -106852402 + GA-rich Low_complexity Low_complexity 3 56 0 3 987 315 0 0 0 chr3 52748593 52748628 -106851155 + (CA)n Simple_repeat Simple_repeat 2 36 0 3 987 480 99 0 0 chr3 52748628 52748699 -106851084 + (GA)n Simple_repeat Simple_repeat 1 71 0 3 987 1125 238 129 23 chr3 52748699 52749095 -106850688 - RLTR20C LTR ERVK -96 438 1 3 987 226 311 64 57 chr3 52749821 52749961 -106849822 - MIRb SINE MIR -8 260 120 3 987 210 77 18 71 chr3 52750861 52750917 -106848866 + (TATAA)n Simple_repeat Simple_repeat 5 57 0 3 987 891 177 171 5 chr3 52752098 52752291 -106847492 - URR1B DNA MER1_type 0 225 1 3 987 396 211 187 20 chr3 52752857 52753007 -106846776 + HAL1 LINE L1 1632 1806 -701 3 987 809 10 10 0 chr3 52753160 52753258 -106846525 + (TAGA)n Simple_repeat Simple_repeat 2 100 0 3 987 450 0 0 0 chr3 52753262 52753312 -106846471 + (TG)n Simple_repeat Simple_repeat 2 51 0 3 987 475 264 9 0 chr3 52753317 52753427 -106846356 - B3 SINE B2 -27 189 79 3 987 207 86 86 0 chr3 52753432 52753490 -106846293 + T-rich Low_complexity Low_complexity 3 65 0 3 987 818 37 9 0 chr3 52753491 52753600 -106846183 - B1_Mm SINE Alu -1 146 37 3 987 462 71 36 0 chr3 52753643 52753727 -106846056 + (TCTA)n Simple_repeat Simple_repeat 4 90 0 3 987 413 353 17 90 chr3 52753747 52754046 -106845737 + MLT1A LTR MaLR 98 374 0 3 987 189 310 88 20 chr3 52754048 52754150 -106845633 - L2a LINE L2 -19 3407 3299 3 987 610 168 23 0 chr3 52755263 52755394 -106844389 + C-rich Low_complexity Low_complexity 3 136 0 3 987 211 189 0 0 chr3 52755914 52755951 -106843832 + ID4 SINE ID 4 40 -43 3 987 363 127 0 0 chr3 52755954 52756017 -106843766 + (CA)n Simple_repeat Simple_repeat 2 64 0 3 987 608 114 40 13 chr3 52757652 52757803 -106841980 + (TCTG)n Simple_repeat Simple_repeat 4 158 0 3 987 234 0 0 0 chr3 52758018 52758044 -106841739 + (ATG)n Simple_repeat Simple_repeat 3 28 0 3 987 917 316 208 34 chr3 52761549 52762654 -106837129 - MTE-int LTR MaLR -106 1474 178 3 987 752 194 75 37 chr3 52764676 52764890 -106834893 - RMER10A LTR ERVL -6 436 215 3 987 31 26 0 0 chr3 52765976 52766014 -106833769 + AT_rich Low_complexity Low_complexity 1 38 0 3 987 821 227 72 0 chr3 52766014 52766208 -106833575 - B3 SINE B2 -8 208 1 3 987 279 308 42 17 chr3 52766208 52766327 -106833456 - L1ME3A LINE L1 0 6173 6052 3 987 225 382 65 7 chr3 52769798 52769951 -106829832 - MIR SINE MIR -6 256 95 3 987 2893 123 149 21 chr3 52770270 52770384 -106829399 - RMER1A Other Other -2 1028 876 3 987 243 0 0 0 chr3 52770384 52770411 -106829372 + (CA)n Simple_repeat Simple_repeat 2 28 0 3 987 2893 123 149 21 chr3 52770411 52770818 -106828965 - RMER1A Other Other -155 875 440 3 987 285 227 38 51 chr3 52771173 52771252 -106828531 - ORR1D2 LTR MaLR -285 85 8 3 987 868 256 82 17 chr3 52772185 52772416 -106827367 + Lx8 LINE L1 6829 7074 -399 3 987 1561 198 118 65 chr3 52772430 52772949 -106826834 + RMER4B LTR ERVK 20 529 -56 3 987 568 280 131 14 chr3 52772953 52773174 -106826609 + Lx8 LINE L1 7072 7318 -155 3 987 41 21 0 0 chr3 52773274 52773322 -106826461 + AT_rich Low_complexity Low_complexity 1 48 0 3 987 24 0 0 0 chr3 52775010 52775034 -106824749 + AT_rich Low_complexity Low_complexity 1 24 0 3 987 198 0 0 0 chr3 52776321 52776343 -106823440 + (CTG)n Simple_repeat Simple_repeat 1 22 0 3 987 894 73 0 0 chr3 52778448 52778571 -106821212 + (GGA)n Simple_repeat Simple_repeat 2 124 0 3 987 255 241 206 48 chr3 52780302 52780612 -106819171 + L1M4 LINE L1 2580 2938 -3208 3 987 498 276 200 61 chr3 52780729 52781220 -106818563 + Lx9 LINE L1 7079 7637 -7 3 987 376 231 98 8 chr3 52781376 52781498 -106818285 + L1M4 LINE L1 3081 3213 -2933 3 987 1021 93 20 0 chr3 52781650 52781800 -106817983 + B2_Mm2 SINE B2 4 156 -39 3 987 477 0 0 0 chr3 52781800 52781853 -106817930 + (TC)n Simple_repeat Simple_repeat 1 53 0 3 987 180 0 0 0 chr3 52781853 52781872 -106817911 + (CA)n Simple_repeat Simple_repeat 1 20 0 3 987 829 281 43 43 chr3 52782778 52783060 -106816723 + B4A SINE B4 2 283 -9 3 987 413 241 137 34 chr3 52783365 52783646 -106816137 - L1MB7 LINE L1 0 6183 5877 3 987 345 264 128 66 chr3 52783757 52784045 -106815738 - L1MB7 LINE L1 -466 5708 5403 3 987 776 145 6 19 chr3 52784100 52784262 -106815521 + CT-rich Low_complexity Low_complexity 3 162 0 3 987 706 158 55 0 chr3 52784443 52784570 -106815213 - B1_Mur3 SINE Alu -15 134 1 3 987 312 315 187 16 chr3 52784598 52784908 -106814875 - Lx8 LINE L1 -2 7471 7109 3 987 376 265 199 35 chr3 52785037 52785268 -106814515 - L1MB7 LINE L1 -1074 5072 4804 3 987 23 0 0 0 chr3 52789099 52789122 -106810661 + AT_rich Low_complexity Low_complexity 1 23 0 3 987 251 220 26 108 chr3 52789522 52789716 -106810067 + (CCTG)n Simple_repeat Simple_repeat 3 180 0 3 987 806 259 30 103 chr3 52790658 52790682 -106809101 - B4 SINE B4 -4 288 266 3 987 384 119 0 0 chr3 52790682 52790741 -106809042 + (TG)n Simple_repeat Simple_repeat 2 60 0 3 987 806 259 30 103 chr3 52790741 52791017 -106808766 - B4 SINE B4 -27 265 10 3 987 215 220 0 0 chr3 52791167 52791226 -106808557 + T-rich Low_complexity Low_complexity 1 59 0 3 987 588 260 233 91 chr3 52791367 52791697 -106808086 + MTE2a LTR MaLR 1 377 -2 3 987 238 366 0 0 chr3 52791987 52792140 -106807643 + (TG)n Simple_repeat Simple_repeat 2 154 0 3 987 213 305 0 56 chr3 52792159 52792319 -106807464 + (TATG)n Simple_repeat Simple_repeat 4 154 0 3 987 183 276 0 0 chr3 52792432 52792530 -106807253 + (TG)n Simple_repeat Simple_repeat 1 98 0 3 987 261 293 0 0 chr3 52792538 52792596 -106807187 - ID4 SINE ID -7 76 19 4 987 216 67 0 0 chr3 52794845 52794875 -106804908 + (CAGA)n Simple_repeat Simple_repeat 3 32 0 4 987 1436 73 10 5 chr3 52797013 52797205 -106802578 + B2_Mm1t SINE B2 1 193 0 4 987 2794 32 266 3 chr3 52798217 52798593 -106801190 + IAPLTR2_Mm LTR ERVK 1 475 0 4 987 182 306 14 27 chr3 52798633 52798707 -106801076 + MIRc SINE MIR 34 106 -162 4 987 225 250 0 77 chr3 52799070 52799161 -106800622 + L1M4 LINE L1 2148 2231 -3915 4 987 228 86 0 0 chr3 52799537 52799572 -106800211 + (TATATG)n Simple_repeat Simple_repeat 1 35 0 4 987 35 0 0 0 chr3 52799696 52799731 -106800052 + AT_rich Low_complexity Low_complexity 1 35 0 4 987 440 242 221 5 chr3 52800170 52800365 -106799418 + B4A SINE B4 42 278 -14 4 987 22 0 0 0 chr3 52801261 52801283 -106798500 + AT_rich Low_complexity Low_complexity 1 22 0 4 987 281 232 132 61 chr3 52801393 52801590 -106798193 + RLTR15 LTR ERVK 69 279 -80 4 987 285 146 0 0 chr3 52801940 52801988 -106797795 + (TG)n Simple_repeat Simple_repeat 1 48 0 4 987 394 196 10 10 chr3 52803221 52803324 -106796459 + GA-rich Low_complexity Low_complexity 2 104 0 4 987 225 0 0 0 chr3 52803711 52803736 -106796047 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 4 987 1394 208 58 0 chr3 52803750 52804058 -106795725 + MTD LTR MaLR 2 327 -92 4 987 372 292 7 91 chr3 52805011 52805029 -106794754 - ID_B1 SINE B4 0 224 178 4 987 668 204 8 15 chr3 52805029 52805163 -106794620 - B1_Mur1 SINE Alu -12 137 5 4 987 372 292 7 91 chr3 52805163 52805203 -106794580 - ID_B1 SINE B4 0 177 65 4 987 426 185 210 0 chr3 52805234 52805353 -106794430 + B1F SINE Alu 6 149 0 4 987 407 271 115 43 chr3 52805571 52805779 -106794004 + MTEa LTR MaLR 25 247 -132 4 987 350 189 33 11 chr3 52805765 52805856 -106793927 + MTEb LTR MaLR 186 278 -101 4 987 687 110 18 0 chr3 52808077 52808186 -106791597 + PB1D9 SINE Alu 10 120 0 4 987 402 265 152 78 chr3 52808243 52808351 -106791432 - MTD LTR MaLR -21 398 264 4 987 531 0 0 0 chr3 52808351 52808410 -106791373 + (CACAC)n Simple_repeat Simple_repeat 1 59 0 4 987 402 265 152 78 chr3 52808410 52808649 -106791134 - MTD LTR MaLR -156 263 27 4 987 210 288 17 0 chr3 52809308 52809367 -106790416 + B4A SINE B4 5 64 -228 4 987 226 269 0 0 chr3 52809409 52809461 -106790322 + (TAA)n Simple_repeat Simple_repeat 3 54 0 4 987 579 233 49 16 chr3 52809494 52809677 -106790106 + L1MA4 LINE L1 5723 5911 -389 4 987 1056 75 0 58 chr3 52810223 52810378 -106789405 + B1_Mus1 SINE Alu 2 147 -1 4 987 381 355 91 25 chr3 52811999 52812360 -106787423 + MLT1E2 LTR MaLR 6 390 -237 4 987 351 252 143 37 chr3 52812734 52812895 -106786888 + B3A SINE B2 6 183 -15 4 987 282 29 0 0 chr3 52813577 52813612 -106786171 + (CTATT)n Simple_repeat Simple_repeat 2 36 0 4 987 180 361 46 0 chr3 52813685 52813793 -106785990 - L2a LINE L2 -19 3407 3295 4 987 495 183 10 41 chr3 52814225 52814322 -106785461 - B1_Mur2 SINE Alu -55 94 1 4 987 307 197 16 0 chr3 52815106 52815167 -106784616 + B1_Mur3 SINE Alu 43 104 -45 4 987 960 240 62 84 chr3 52815218 52815735 -106784048 + MT2B LTR ERVL 1 593 -8 4 987 226 226 86 97 chr3 52815970 52816063 -106783720 + B1F SINE Alu 1 92 -57 4 987 245 51 26 0 chr3 52817374 52817413 -106782370 + (CAAAAA)n Simple_repeat Simple_repeat 4 43 0 4 987 195 42 0 0 chr3 52817939 52817963 -106781820 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 4 987 215 143 0 23 chr3 52818404 52818447 -106781336 - ID4_ SINE ID -40 43 2 4 987 207 216 20 0 chr3 52819840 52819891 -106779892 + CT-rich Low_complexity Low_complexity 4 55 0 4 987 648 285 189 26 chr3 52820016 52820586 -106779197 - MMAR1 DNA Mariner -5 1281 619 4 987 257 204 84 84 chr3 52821241 52821280 -106778503 + ID_B1 SINE B4 118 222 0 4 987 469 31 0 15 chr3 52821280 52821346 -106778437 + B1_Mm SINE Alu 83 147 0 4 987 198 91 0 0 chr3 52821348 52821381 -106778402 + (A)n Simple_repeat Simple_repeat 1 33 0 4 123 719 233 63 5 chr3 52821918 52822108 -106777675 - B3 SINE B2 -13 203 3 4 988 777 319 67 20 chr3 52822339 52822684 -106777099 - MLT1A0 LTR MaLR -4 361 1 4 988 360 0 0 0 chr3 52822856 52822896 -106776887 + (TAAA)n Simple_repeat Simple_repeat 1 40 0 4 988 340 329 43 7 chr3 52823152 52823290 -106776493 - ERVL-E-int LTR ERVL -494 5173 5031 4 988 930 158 55 33 chr3 52823845 52824028 -106775755 - B2_Mm2 SINE B2 -8 187 1 4 988 486 0 0 0 chr3 52824398 52824452 -106775331 + (TG)n Simple_repeat Simple_repeat 1 54 0 4 988 572 141 0 38 chr3 52825416 52825549 -106774234 - Lx4B LINE L1 -5 7053 6926 4 988 239 254 0 31 chr3 52825619 52825684 -106774099 + CT-rich Low_complexity Low_complexity 6 68 0 4 988 441 274 28 115 chr3 52825684 52826006 -106773777 + RMER17C LTR ERVK 85 378 -32 4 988 1187 130 23 0 chr3 52826007 52826184 -106773599 - Lx4B LINE L1 -128 6930 6750 4 988 357 294 29 10 chr3 52826258 52826361 -106773422 - Tigger7 DNA MER2_type -2 2489 2385 4 988 1024 244 49 25 chr3 52826395 52826681 -106773102 + MT2A LTR ERVL 1 293 -240 4 988 299 277 87 7 chr3 52827785 52827923 -106771860 + L1M1 LINE L1 5482 5630 -673 4 988 1648 265 26 26 chr3 52827944 52828401 -106771382 + MT2A LTR ERVL 3 459 -74 4 988 330 26 0 0 chr3 52828401 52828440 -106771343 + (CA)n Simple_repeat Simple_repeat 1 39 0 4 988 273 219 41 20 chr3 52828457 52828555 -106771228 + (TA)n Simple_repeat Simple_repeat 2 101 0 4 988 227 118 50 50 chr3 52828582 52828662 -106771121 + (TATAA)n Simple_repeat Simple_repeat 5 84 0 4 988 319 192 47 27 chr3 52828671 52828821 -106770962 + (TA)n Simple_repeat Simple_repeat 1 153 0 4 988 561 339 17 4 chr3 52828915 52829162 -106770621 + Lx9 LINE L1 5622 5902 -1742 4 988 1578 190 279 2 chr3 52829554 52829970 -106769813 + MT2A LTR ERVL 3 533 0 4 988 539 259 0 0 chr3 52830045 52830153 -106769630 + B3 SINE B2 1 108 -108 4 988 468 202 85 19 chr3 52830207 52830313 -106769470 + Lx8 LINE L1 7175 7287 -186 4 988 225 80 157 20 chr3 52830454 52830505 -106769278 - L1MC4a LINE L1 -586 7296 7239 4 988 320 244 71 48 chr3 52831874 52832042 -106767741 - L1MC3 LINE L1 -111 7674 7503 4 988 2003 165 49 30 chr3 52832052 52832375 -106767408 - MTC LTR MaLR -8 413 75 4 988 1310 87 55 0 chr3 52832375 52832558 -106767225 - B2_Mm2 SINE B2 0 195 3 4 988 2003 165 49 30 chr3 52832558 52832639 -106767144 - MTC LTR MaLR -347 74 1 4 988 281 140 0 17 chr3 52833951 52834009 -106765774 + (TA)n Simple_repeat Simple_repeat 1 57 0 4 988 262 287 52 69 chr3 52834123 52834239 -106765544 - PB1D10 SINE Alu -1 116 3 4 988 500 299 31 13 chr3 52834321 52834480 -106765303 + RSINE1 SINE B4 4 165 0 4 988 26 50 0 0 chr3 52834489 52834529 -106765254 + AT_rich Low_complexity Low_complexity 1 40 0 4 988 25 0 0 0 chr3 52834904 52834929 -106764854 + AT_rich Low_complexity Low_complexity 1 25 0 4 988 1009 217 0 41 chr3 52835036 52835054 -106764729 - B3 SINE B2 -4 212 199 4 988 297 0 0 0 chr3 52835054 52835087 -106764696 + (TTTTA)n Simple_repeat Simple_repeat 5 37 0 4 988 1009 217 0 41 chr3 52835087 52835289 -106764494 - B3 SINE B2 -18 198 1 4 988 227 31 31 0 chr3 52835389 52835421 -106764362 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 4 988 529 288 112 48 chr3 52835755 52836069 -106763714 + RMER15 LTR ERVL 207 540 -35 4 988 301 326 56 35 chr3 52836201 52836344 -106763439 + MLT1A0 LTR MaLR 49 194 -171 4 988 312 222 0 0 chr3 52836362 52836434 -106763349 + GA-rich Low_complexity Low_complexity 3 74 0 4 988 234 303 95 74 chr3 52836474 52836663 -106763120 + MLT1A0 LTR MaLR 167 359 -15 4 988 220 333 25 13 chr3 52836735 52836814 -106762969 - MIR SINE MIR -104 104 25 4 988 751 188 0 0 chr3 52837170 52837303 -106762480 + B1_Mus2 SINE Alu 1 133 -14 4 988 32 0 0 0 chr3 52837720 52837752 -106762031 + AT_rich Low_complexity Low_complexity 1 32 0 4 988 708 273 46 71 chr3 52838062 52838342 -106761441 - B4A SINE B4 -7 285 13 4 988 645 229 217 0 chr3 52838424 52838590 -106761193 - B3 SINE B2 -14 202 1 4 988 205 237 0 0 chr3 52839380 52839418 -106760365 + (CGTG)n Simple_repeat Simple_repeat 4 41 0 4 988 252 86 0 0 chr3 52839741 52839776 -106760007 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 4 988 360 276 0 37 chr3 52840382 52840491 -106759292 + PB1D10 SINE Alu 5 109 -8 4 988 1381 90 26 0 chr3 52841667 52841856 -106757927 + B2_Mm2 SINE B2 1 194 -1 4 988 376 300 103 23 chr3 52844146 52844320 -106755463 - MER20 DNA MER1_type 0 219 32 4 988 361 321 22 0 chr3 52844829 52844966 -106754817 + G-rich Low_complexity Low_complexity 1 140 0 4 988 294 115 0 0 chr3 52849392 52849444 -106750339 + (TA)n Simple_repeat Simple_repeat 1 52 0 4 988 207 121 17 33 chr3 52849588 52849648 -106750135 + CT-rich Low_complexity Low_complexity 2 60 0 4 988 394 280 9 27 chr3 52849697 52849807 -106749976 - B4A SINE B4 0 292 185 4 988 822 48 0 0 chr3 52851016 52851119 -106748664 + (GA)n Simple_repeat Simple_repeat 2 104 0 4 988 435 63 0 0 chr3 52851212 52851275 -106748508 + (TC)n Simple_repeat Simple_repeat 2 64 0 4 988 216 0 0 0 chr3 52851275 52851299 -106748484 + (CA)n Simple_repeat Simple_repeat 1 24 0 4 988 216 209 71 43 chr3 52851310 52851380 -106748403 - MER5A DNA MER1_type -117 72 1 4 988 469 274 143 0 chr3 52853969 52854137 -106745646 + B3A SINE B2 1 192 -6 4 988 198 0 0 0 chr3 52854231 52854253 -106745530 + (TTTA)n Simple_repeat Simple_repeat 4 25 0 4 988 757 244 61 0 chr3 52854265 52854429 -106745354 - B3 SINE B2 -42 174 1 5 988 816 16 49 0 chr3 52854625 52854747 -106745036 + (TCTA)n Simple_repeat Simple_repeat 2 129 0 5 988 1059 114 0 0 chr3 52855516 52855682 -106744101 + (GA)n Simple_repeat Simple_repeat 2 167 0 5 988 234 91 0 0 chr3 52856778 52856811 -106742972 + (TTTTA)n Simple_repeat Simple_repeat 4 36 0 5 988 297 0 0 0 chr3 52856844 52856877 -106742906 + (TTTTA)n Simple_repeat Simple_repeat 4 36 0 5 988 288 178 18 45 chr3 52857504 52857616 -106742167 + (TTA)n Simple_repeat Simple_repeat 2 110 0 5 988 427 288 108 13 chr3 52857668 52857900 -106741883 - B4A SINE B4 -36 256 3 5 988 216 0 0 0 chr3 52857912 52857936 -106741847 + (T)n Simple_repeat Simple_repeat 1 24 0 5 988 225 0 0 0 chr3 52860336 52860361 -106739422 + (ATTG)n Simple_repeat Simple_repeat 4 28 0 5 988 752 203 0 29 chr3 52860364 52860501 -106739282 - B1_Mur1 SINE Alu -16 133 1 5 988 377 298 9 0 chr3 52860923 52861017 -106738766 + ID_B1 SINE B4 82 176 -48 5 988 2051 178 10 29 chr3 52861017 52861429 -106738354 - MTB_Mm LTR MaLR 0 407 4 5 988 377 298 9 0 chr3 52861429 52861448 -106738335 + ID_B1 SINE B4 177 195 -29 5 988 306 0 0 0 chr3 52861611 52861645 -106738138 + (TA)n Simple_repeat Simple_repeat 1 34 0 5 988 209 194 0 0 chr3 52861762 52861798 -106737985 + (TG)n Simple_repeat Simple_repeat 2 37 0 5 988 586 258 158 24 chr3 52861806 52862052 -106737731 - B4A SINE B4 -13 279 1 5 988 231 167 0 0 chr3 52863072 52863114 -106736669 + (TG)n Simple_repeat Simple_repeat 1 42 0 5 988 306 0 0 0 chr3 52863701 52863735 -106736048 + (TATG)n Simple_repeat Simple_repeat 3 36 0 5 988 387 0 0 0 chr3 52864372 52864415 -106735368 + (TC)n Simple_repeat Simple_repeat 2 44 0 5 988 530 222 0 16 chr3 52864416 52864599 -106735184 + (TG)n Simple_repeat Simple_repeat 1 180 0 5 988 234 0 0 0 chr3 52864699 52864725 -106735058 + (GA)n Simple_repeat Simple_repeat 2 27 0 5 988 254 350 83 30 chr3 52865254 52865422 -106734361 - MER58A DNA MER1_type -17 207 31 5 988 295 67 12 62 chr3 52865489 52865569 -106734214 + (TTTTTG)n Simple_repeat Simple_repeat 3 78 0 5 988 712 138 24 24 chr3 52865623 52865878 -106733905 + GA-rich Low_complexity Low_complexity 1 255 0 5 988 365 120 24 24 chr3 52865893 52865978 -106733805 + GA-rich Low_complexity Low_complexity 4 88 0 5 988 983 195 59 10 chr3 52866277 52866479 -106733304 - B3 SINE B2 0 216 5 5 988 327 146 0 0 chr3 52866485 52866540 -106733243 + (TG)n Simple_repeat Simple_repeat 2 56 0 5 988 384 40 0 0 chr3 52868877 52868927 -106730856 + (TC)n Simple_repeat Simple_repeat 1 50 0 5 988 261 0 0 0 chr3 52869293 52869322 -106730461 + (CA)n Simple_repeat Simple_repeat 2 30 0 5 988 323 304 224 61 chr3 52870684 52870752 -106729031 + MTEa LTR MaLR 1 82 -297 5 988 495 0 0 0 chr3 52870752 52870807 -106728976 + (TG)n Simple_repeat Simple_repeat 1 55 0 5 988 323 304 224 61 chr3 52870807 52871064 -106728719 + MTEa LTR MaLR 83 379 0 5 988 400 247 34 0 chr3 52871123 52871212 -106728571 + B3 SINE B2 120 211 -5 5 988 862 272 19 0 chr3 52871240 52871446 -106728337 + B3 SINE B2 1 210 -6 5 988 24 67 0 0 chr3 52872230 52872275 -106727508 + AT_rich Low_complexity Low_complexity 1 45 0 5 988 22 0 0 0 chr3 52873597 52873619 -106726164 + AT_rich Low_complexity Low_complexity 1 22 0 5 988 819 248 132 0 chr3 52874720 52874962 -106724821 + B4A SINE B4 5 278 -14 5 988 563 288 39 0 chr3 52875134 52875287 -106724496 - ORR1E LTR MaLR -198 161 3 5 988 596 229 28 7 chr3 52875837 52875982 -106723801 + B3A SINE B2 1 148 -50 5 988 282 260 27 0 chr3 52875992 52876065 -106723718 - RSINE1 SINE B4 -89 76 2 5 988 691 294 107 28 chr3 52876738 52877028 -106722755 + MER2 DNA MER2_type 4 316 -29 5 988 219 189 0 0 chr3 52877406 52877459 -106722324 + (TG)n Simple_repeat Simple_repeat 2 54 0 5 988 185 272 83 36 chr3 52877739 52877823 -106721960 - L2c LINE L2 -13 3374 3287 5 988 241 333 0 0 chr3 52878723 52878792 -106720991 - BC1_Mm scRNA scRNA -67 85 17 5 988 276 253 0 13 chr3 52878822 52878898 -106720885 - PB1D10 SINE Alu -22 95 21 5 988 1046 174 55 0 chr3 52879491 52879692 -106720091 - B3 SINE B2 -4 212 1 5 988 207 0 0 0 chr3 52881169 52881192 -106718591 + (TTG)n Simple_repeat Simple_repeat 2 24 0 5 988 491 336 143 11 chr3 52881594 52881943 -106717840 - LTR16B LTR ERVL -68 395 1 5 988 1016 117 110 12 chr3 52882779 52882952 -106716831 + B2_Mm2 SINE B2 1 190 -5 5 988 403 316 15 0 chr3 52883146 52883282 -106716501 + MLT1B LTR MaLR 40 177 -213 5 988 756 242 10 55 chr3 52883751 52883952 -106715831 + B3A SINE B2 2 193 -5 5 988 22 0 0 0 chr3 52883979 52884001 -106715782 + AT_rich Low_complexity Low_complexity 1 22 0 5 988 930 161 7 0 chr3 52884040 52884189 -106715594 - B1_Mur4 SINE Alu 0 150 1 5 988 442 318 54 49 chr3 52884314 52884621 -106715162 - ORR1E LTR MaLR 0 379 49 5 988 402 21 0 0 chr3 52884657 52884704 -106715079 + (TG)n Simple_repeat Simple_repeat 1 47 0 5 988 2170 80 19 0 chr3 52885339 52885652 -106714131 - ORR1A2 LTR MaLR -8 319 1 5 988 273 308 143 0 chr3 52885673 52885764 -106714019 + ORR1E LTR MaLR 32 135 -224 5 988 288 0 0 0 chr3 52887502 52887534 -106712249 + (T)n Simple_repeat Simple_repeat 1 32 0 5 988 405 0 0 0 chr3 52888135 52888180 -106711603 + (TG)n Simple_repeat Simple_repeat 2 46 0 5 988 266 0 0 29 chr3 52888555 52888590 -106711193 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 5 988 24 32 0 0 chr3 52889537 52889568 -106710215 + AT_rich Low_complexity Low_complexity 1 31 0 5 988 203 242 76 0 chr3 52889569 52889635 -106710148 - L2c LINE L2 -7 3380 3310 5 988 631 135 117 0 chr3 52889644 52889755 -106710028 - Lx LINE L1 -639 6015 5892 5 988 292 290 53 61 chr3 52889827 52889941 -106709842 + Lx8 LINE L1 6569 6681 -792 5 988 884 242 78 0 chr3 52893035 52893266 -106706517 - B4A SINE B4 -43 249 1 5 988 543 246 77 101 chr3 52894009 52894307 -106705476 + B4A SINE B4 2 292 0 5 988 351 44 0 0 chr3 52894352 52894397 -106705386 + (CA)n Simple_repeat Simple_repeat 2 46 0 5 988 342 67 0 0 chr3 52895756 52895801 -106703982 + (TAAA)n Simple_repeat Simple_repeat 1 45 0 5 988 432 0 0 0 chr3 52895894 52895942 -106703841 + (TC)n Simple_repeat Simple_repeat 1 48 0 5 988 198 0 0 0 chr3 52895942 52895963 -106703820 + (CA)n Simple_repeat Simple_repeat 1 22 0 5 988 289 268 59 75 chr3 52896563 52896922 -106702861 + RLTR15 LTR ERVK 1 323 -36 5 988 306 98 0 0 chr3 52896957 52897008 -106702775 + (TCC)n Simple_repeat Simple_repeat 2 52 0 5 988 236 333 0 13 chr3 52897008 52897084 -106702699 + CT-rich Low_complexity Low_complexity 2 76 0 5 988 603 264 0 0 chr3 52897111 52897255 -106702528 + B1F SINE Alu 6 149 0 5 988 444 258 0 0 chr3 52898190 52898550 -106701233 + (TG)n Simple_repeat Simple_repeat 1 360 0 5 988 685 202 6 11 chr3 52898568 52898653 -106701130 + (TG)n Simple_repeat Simple_repeat 2 84 0 5 988 315 0 0 0 chr3 52898653 52898688 -106701095 + (GA)n Simple_repeat Simple_repeat 1 35 0 5 988 685 202 6 11 chr3 52898688 52898782 -106701001 + (TG)n Simple_repeat Simple_repeat 1 95 0 5 988 2368 120 7 70 chr3 52898785 52899197 -106700586 - ORR1B1 LTR MaLR -8 386 1 5 988 538 222 0 22 chr3 52899220 52899404 -106700379 + (TG)n Simple_repeat Simple_repeat 1 180 0 5 988 284 325 21 95 chr3 52899523 52899713 -106700070 - L3 LINE CR1 -2195 2294 2119 5 988 246 321 12 12 chr3 52900321 52900403 -106699380 - MTE2b LTR MaLR -14 365 284 5 988 414 0 0 0 chr3 52900999 52901045 -106698738 + (TG)n Simple_repeat Simple_repeat 2 47 0 5 988 1145 100 0 10 chr3 52902516 52902719 -106697064 + (TTC)n Simple_repeat Simple_repeat 1 200 0 5 988 288 208 0 0 chr3 52902722 52902768 -106697015 + T-rich Low_complexity Low_complexity 32 77 0 5 988 1175 75 0 7 chr3 52902768 52902916 -106696867 - B1_Mm SINE Alu 0 147 1 5 988 288 208 0 0 chr3 52902916 52902946 -106696837 + T-rich Low_complexity Low_complexity 2 31 0 5 988 4031 121 12 3 chr3 52903010 52903597 -106696186 - Lx4A LINE L1 -36 7022 6431 5 988 21 0 0 0 chr3 52907097 52907118 -106692665 + AT_rich Low_complexity Low_complexity 1 21 0 5 988 927 332 32 7 chr3 52909011 52909293 -106690490 - B4 SINE B4 0 292 4 5 988 283 146 0 35 chr3 52909895 52909952 -106689831 + B3 SINE B2 3 57 -159 5 988 663 186 93 0 chr3 52910151 52910291 -106689492 + Lx5 LINE L1 6807 6959 -91 5 988 7982 151 32 16 chr3 52910308 52911731 -106688052 + Lx4B LINE L1 5597 7042 -16 5 988 225 94 0 0 chr3 52911733 52911765 -106688018 + (TTAA)n Simple_repeat Simple_repeat 3 34 0 5 988 349 169 42 0 chr3 52911971 52912042 -106687741 + PB1D10 SINE Alu 43 116 -1 5 988 197 264 122 16 chr3 52912213 52912336 -106687447 + MIRc SINE MIR 17 152 -116 5 988 465 19 0 0 chr3 52913445 52913499 -106686284 + (TG)n Simple_repeat Simple_repeat 1 54 0 5 988 452 287 100 18 chr3 52914515 52914735 -106685048 + MLT1B LTR MaLR 120 357 -33 5 988 184 114 22 43 chr3 52915240 52915286 -106684497 + CT-rich Low_complexity Low_complexity 4 48 0 5 988 320 267 38 15 chr3 52915404 52915537 -106684246 - B1F SINE Alu -9 140 5 5 988 584 187 0 0 chr3 52915620 52915727 -106684056 + B3 SINE B2 1 107 -109 5 988 1093 212 14 0 chr3 52916078 52916290 -106683493 - B3 SINE B2 0 216 2 5 988 187 29 56 28 chr3 52916362 52916398 -106683385 + (CAAAA)n Simple_repeat Simple_repeat 2 38 0 5 988 227 186 0 0 chr3 52917033 52917076 -106682707 + (ATGGTG)n Simple_repeat Simple_repeat 1 43 0 5 988 2838 16 3 0 chr3 52917340 52917661 -106682122 - RLTRETN_Mm LTR ERVK 0 322 1 5 988 41293 28 8 7 chr3 52917661 52922499 -106677284 - MMETn-int LTR ERVK 0 4844 1 5 988 2838 16 3 0 chr3 52922499 52922820 -106676963 - RLTRETN_Mm LTR ERVK 0 322 1 5 988 765 176 17 0 chr3 52923090 52923266 -106676517 + CT-rich Low_complexity Low_complexity 2 180 0 6 988 274 262 0 24 chr3 52923280 52923362 -106676421 + CT-rich Low_complexity Low_complexity 3 82 0 6 988 1184 42 7 0 chr3 52923717 52923861 -106675922 + B1_Mus2 SINE Alu 1 145 -2 6 988 209 57 29 0 chr3 52923861 52923896 -106675887 + (CAAAAA)n Simple_repeat Simple_repeat 1 36 0 6 988 245 234 0 0 chr3 52924451 52924498 -106675285 + MER5A DNA MER1_type 142 188 -1 6 988 306 271 98 0 chr3 52925105 52925227 -106674556 - MLT1K LTR MaLR 0 595 462 6 988 1702 19 0 5 chr3 52925243 52925458 -106674325 + ORR1A0 LTR MaLR 133 346 0 6 988 7298 68 28 12 chr3 52925458 52926926 -106672857 + ORR1A0-int LTR MaLR 1 1154 -638 6 988 627 14 0 0 chr3 52928231 52928303 -106671480 + (CA)n Simple_repeat Simple_repeat 1 72 0 6 988 912 150 114 45 chr3 52928881 52929083 -106670700 - B3 SINE B2 0 216 1 6 988 275 271 104 0 chr3 52930232 52930328 -106669455 + MLT1A0 LTR MaLR 216 321 -44 6 988 228 232 68 68 chr3 52930428 52930516 -106669267 - MIR3 SINE MIR -35 173 86 6 988 840 275 103 16 chr3 52930756 52931066 -106668717 + MER2 DNA MER2_type 8 344 -1 6 988 1077 102 0 0 chr3 52931989 52932146 -106667637 + (TTTC)n Simple_repeat Simple_repeat 2 158 0 6 988 523 250 64 32 chr3 52932147 52932304 -106667479 - RSINE1 SINE B4 -1 164 3 6 988 495 0 0 0 chr3 52932352 52932407 -106667376 + (CA)n Simple_repeat Simple_repeat 2 56 0 6 988 42136 5 0 1 chr3 52933363 52940135 -106659648 - L1Md_A LINE L1 0 6582 1 6 988 1360 86 16 16 chr3 52940348 52940537 -106659246 - B2_Mm2 SINE B2 -6 189 1 6 988 987 148 64 30 chr3 52940560 52940762 -106659021 + B3 SINE B2 1 209 -7 6 988 210 296 0 27 chr3 52941425 52941498 -106658285 + GA-rich Low_complexity Low_complexity 6 76 0 6 988 557 270 13 0 chr3 52942050 52942209 -106657574 - MER3 DNA MER1_type 0 209 49 6 988 1736 208 11 74 chr3 52942602 52942666 -106657117 - MTD LTR MaLR 0 419 355 6 988 198 0 0 0 chr3 52942666 52942688 -106657095 + (TTG)n Simple_repeat Simple_repeat 1 22 0 6 988 1736 208 11 74 chr3 52942688 52943069 -106656714 - MTD LTR MaLR -65 354 2 6 988 768 265 131 19 chr3 52943850 52944170 -106655613 - MTE2b LTR MaLR -9 370 15 6 988 1129 88 0 0 chr3 52944962 52945109 -106654674 - B1_Mus2 SINE Alu 0 147 1 6 988 266 373 57 0 chr3 52945766 52945943 -106653840 - MLT1A0 LTR MaLR -55 310 124 6 988 235 336 7 78 chr3 52946283 52946425 -106653358 - MIRc SINE MIR -71 197 66 6 988 865 203 35 20 chr3 52946511 52946716 -106653067 - B3 SINE B2 0 216 8 6 988 299 307 137 12 chr3 52947856 52948024 -106651759 + MIRb SINE MIR 44 232 -36 6 988 204 200 0 0 chr3 52948050 52948100 -106651683 + (CCA)n Simple_repeat Simple_repeat 1 50 0 6 988 296 64 21 0 chr3 52949843 52949890 -106649893 + (CAA)n Simple_repeat Simple_repeat 1 48 0 6 988 411 21 0 0 chr3 52950357 52950405 -106649378 + (TC)n Simple_repeat Simple_repeat 2 49 0 6 988 483 18 0 0 chr3 52950405 52950460 -106649323 + (TG)n Simple_repeat Simple_repeat 1 56 0 6 988 408 245 51 115 chr3 52950938 52951065 -106648718 - MLT2B1 LTR ERVL -76 491 375 6 988 2308 83 9 61 chr3 52951065 52951410 -106648373 + ORR1A2 LTR MaLR 1 327 0 6 988 408 245 51 115 chr3 52951410 52951439 -106648344 - MLT2B1 LTR ERVL -193 374 345 6 988 377 271 104 16 chr3 52951508 52951650 -106648133 - MLT2B1 LTR ERVL -345 175 20 6 988 1741 217 63 3 chr3 52952397 52952776 -106647007 + MTD LTR MaLR 18 419 0 6 123 403 304 119 35 chr3 52952792 52953270 -106646513 + L1MA7 LINE L1 5749 6268 -23 6 989 465 225 50 83 chr3 52953349 52953470 -106646313 - PB1D10 SINE Alu 0 117 1 6 989 285 29 0 0 chr3 52955525 52955559 -106644224 + (TTG)n Simple_repeat Simple_repeat 3 36 0 6 989 523 219 11 26 chr3 52955559 52955692 -106644091 - MTEb LTR MaLR -27 352 212 6 989 743 213 188 35 chr3 52955818 52956047 -106643736 - MTEb LTR MaLR -115 264 1 6 989 383 0 0 21 chr3 52956520 52956568 -106643215 + (TG)n Simple_repeat Simple_repeat 2 48 0 6 989 3647 112 118 45 chr3 52956710 52957353 -106642430 + RMER6C LTR ERVK 1 690 0 6 989 843 252 85 22 chr3 52959798 52960070 -106639713 - B4A SINE B4 -1 291 3 6 989 463 123 14 0 chr3 52960218 52960291 -106639492 - B1F1 SINE Alu -8 141 68 6 989 640 289 0 17 chr3 52960944 52961120 -106638663 + B3 SINE B2 16 188 -28 6 989 558 198 17 17 chr3 52961692 52961867 -106637916 + CT-rich Low_complexity Low_complexity 5 179 0 6 989 1035 233 0 33 chr3 52963539 52963752 -106636031 + B3 SINE B2 1 206 -10 6 989 21 36 0 0 chr3 52963892 52963920 -106635863 + AT_rich Low_complexity Low_complexity 1 28 0 6 989 2225 73 16 0 chr3 52966478 52966792 -106632991 + ORR1A2 LTR MaLR 1 319 -8 6 989 896 168 0 0 chr3 52966941 52967084 -106632699 + B1_Mus2 SINE Alu 5 147 0 6 989 183 114 0 0 chr3 52967326 52967361 -106632422 + (TCTG)n Simple_repeat Simple_repeat 2 36 0 6 989 2270 140 6 8 chr3 52967367 52967727 -106632056 - RLTR15 LTR ERVK 0 359 1 6 989 430 266 0 0 chr3 52968065 52968178 -106631605 - PB1D10 SINE Alu 0 117 5 6 989 351 335 62 10 chr3 52970655 52970863 -106628920 - L1M5 LINE L1 -516 5663 5445 6 989 382 312 118 37 chr3 52971031 52971380 -106628403 - L1MD LINE L1 -914 5232 4856 6 989 1960 127 57 86 chr3 52971698 52972095 -106627688 + ORR1B1 LTR MaLR 1 387 -7 6 989 1836 131 22 103 chr3 52972095 52972453 -106627330 - ORR1A4 LTR MaLR 0 329 1 6 989 874 242 14 14 chr3 52974064 52974274 -106625509 - B3 SINE B2 -6 210 1 6 989 430 273 104 135 chr3 52974442 52974730 -106625053 + B4A SINE B4 2 280 -12 6 989 3989 62 30 25 chr3 52974864 52975380 -106624403 - Lx3_Mus LINE L1 -600 6409 5890 6 989 2323 75 120 3 chr3 52975380 52975729 -106624054 - RLTR10 LTR ERVK 0 390 1 6 989 3989 62 30 25 chr3 52975729 52975776 -106624007 - Lx3_Mus LINE L1 -1120 5889 5843 6 989 4495 69 8 2 chr3 52975778 52976372 -106623411 + Lx3_Mus LINE L1 6404 7001 -8 6 989 717 63 0 0 chr3 52978378 52978473 -106621310 + (TTTC)n Simple_repeat Simple_repeat 2 96 0 6 989 1196 34 7 40 chr3 52978478 52978630 -106621153 - B1_Mm SINE Alu 0 147 1 6 989 340 161 14 0 chr3 52978684 52978749 -106621034 - B2_Mm2 SINE B2 -82 116 46 6 989 1161 124 11 0 chr3 52978799 52978976 -106620807 - B2_Mm1t SINE B2 -14 179 1 6 989 315 122 0 0 chr3 52979348 52979397 -106620386 + (T)n Simple_repeat Simple_repeat 1 49 0 6 989 1236 204 48 48 chr3 52979401 52979558 -106620225 - ORR1D1 LTR MaLR -53 321 163 6 989 1325 124 262 14 chr3 52979558 52979852 -106619931 - ORR1B2 LTR MaLR 0 367 1 6 989 1236 204 48 48 chr3 52979852 52980008 -106619775 - ORR1D1 LTR MaLR -212 162 8 6 989 1135 79 0 0 chr3 52980074 52980214 -106619569 + B1_Mus1 SINE Alu 1 140 -8 6 989 206 0 69 0 chr3 52980216 52980245 -106619538 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 6 989 287 83 0 0 chr3 52980452 52980500 -106619283 - L1Md_T LINE L1 -1 6581 6534 6 989 1574 43 0 11 chr3 52980538 52980725 -106619058 - B2_Mm1a SINE B2 -7 186 2 6 989 331 277 0 0 chr3 52981948 52982031 -106617752 + ID2 SINE ID 1 83 0 6 989 1052 146 44 22 chr3 52982927 52983109 -106616674 - B2_Mm2 SINE B2 -7 188 3 6 989 214 196 22 0 chr3 52983463 52983509 -106616274 + (CA)n Simple_repeat Simple_repeat 1 47 0 6 989 194 91 30 0 chr3 52983684 52983717 -106616066 + (TTTTC)n Simple_repeat Simple_repeat 1 34 0 6 989 3024 77 43 3 chr3 52984921 52985312 -106614471 + MTB_Mm LTR MaLR 1 407 0 6 989 284 336 17 17 chr3 52985563 52985678 -106614105 - PB1D10 SINE Alu -1 116 2 6 989 1939 182 119 27 chr3 52986466 52986946 -106612837 - RMER15 LTR ERVL -25 550 27 6 989 213 314 104 9 chr3 52988029 52988135 -106611648 + MIRm SINE MIR 64 179 -97 6 989 933 49 0 0 chr3 52990171 52990294 -106609489 + B1_Mus1 SINE Alu 26 148 0 6 989 36185 34 0 0 chr3 52990311 52995524 -106604259 + L1Md_T LINE L1 281 5589 -297 6 989 8881 6 18 0 chr3 52995524 52996502 -106603281 + L1Md_T LINE L1 5590 6585 0 6 989 384 22 0 0 chr3 52996509 52996554 -106603229 + (GA)n Simple_repeat Simple_repeat 2 46 0 6 989 299 273 105 0 chr3 52996896 52997039 -106602744 - Charlie1 DNA MER1_type 0 2781 2624 6 989 206 80 80 0 chr3 52997044 52997094 -106602689 + (TCTA)n Simple_repeat Simple_repeat 1 54 0 6 989 382 330 117 33 chr3 52997225 52997677 -106602106 - ERVL-int LTR ERVL -1203 4554 4065 6 989 641 259 6 48 chr3 52997700 52997866 -106601917 - RSINE1 SINE B4 0 165 7 6 989 263 296 85 25 chr3 52998024 52998142 -106601641 + MLT2B4 LTR ERVL 18 142 -414 6 989 41 0 0 0 chr3 52998234 52998275 -106601508 + AT_rich Low_complexity Low_complexity 1 41 0 6 989 554 319 152 64 chr3 52998292 52998965 -106600818 - Charlie1 DNA MER1_type -248 2533 1802 6 989 234 0 0 0 chr3 52999148 52999174 -106600609 + (T)n Simple_repeat Simple_repeat 1 26 0 6 989 630 250 165 11 chr3 52999412 52999691 -106600092 + L1MB7 LINE L1 5552 5873 -311 6 989 228 368 56 0 chr3 52999875 53000000 -106599783 + L1MA10 LINE L1 6192 6323 -11 6 989 377 175 188 26 chr3 53000501 53000618 -106599165 + B1F2 SINE Alu 13 148 -1 1 989 657 283 129 30 chr3 53000628 53000861 -106598922 + B4A SINE B4 16 271 -21 2 989 309 68 0 0 chr3 53000862 53000906 -106598877 + (CA)n Simple_repeat Simple_repeat 1 44 0 3 989 207 0 0 0 chr3 53002404 53002427 -106597356 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 4 989 1944 60 4 8 chr3 53003126 53003379 -106596404 - L1_Mus2 LINE L1 -23 6543 6292 5 989 459 219 28 28 chr3 53004773 53004881 -106594902 - B3 SINE B2 -107 109 2 6 989 413 303 69 20 chr3 53009285 53009487 -106590296 + MIR SINE MIR 38 249 -13 7 989 342 0 0 0 chr3 53010975 53011013 -106588770 + (CA)n Simple_repeat Simple_repeat 1 38 0 8 989 330 214 131 0 chr3 53012216 53012300 -106587483 + B3 SINE B2 1 95 -121 9 989 414 223 0 14 chr3 53012265 53012382 -106587401 - B3A SINE B2 -83 112 1 1 989 336 24 0 0 chr3 53015179 53015220 -106584563 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 989 416 252 36 102 chr3 53015619 53015756 -106584027 + B3 SINE B2 22 149 -67 1 989 429 270 86 86 chr3 53015897 53015910 -106583873 - RSINE1 SINE B4 0 165 154 1 989 489 17 0 0 chr3 53015910 53015968 -106583815 + (GA)n Simple_repeat Simple_repeat 1 58 0 1 989 429 270 86 86 chr3 53015968 53016116 -106583667 - RSINE1 SINE B4 -12 153 4 1 989 250 346 37 0 chr3 53016154 53016261 -106583522 - MER5B DNA MER1_type -48 130 20 1 989 637 300 68 145 chr3 53016527 53017294 -106582489 - LTR82A LTR ERVL -141 731 24 1 989 326 214 146 28 chr3 53018063 53018241 -106581542 - Charlie5 DNA MER1_type 0 2624 2426 1 989 369 109 0 0 chr3 53018950 53019005 -106580778 + (TATG)n Simple_repeat Simple_repeat 1 55 0 1 989 228 67 0 0 chr3 53019425 53019455 -106580328 + (CCA)n Simple_repeat Simple_repeat 3 32 0 1 989 330 26 0 0 chr3 53019836 53019875 -106579908 + (TA)n Simple_repeat Simple_repeat 1 39 0 2 989 293 159 67 12 chr3 53019889 53020054 -106579729 + (TA)n Simple_repeat Simple_repeat 2 175 0 2 989 231 238 125 0 chr3 53021073 53021153 -106578630 - MLT1C LTR MaLR -297 170 81 2 989 631 158 6 24 chr3 53022423 53022592 -106577191 + (TA)n Simple_repeat Simple_repeat 2 167 0 2 989 909 185 152 0 chr3 53022704 53022888 -106576895 + B3 SINE B2 5 216 0 2 989 438 139 0 0 chr3 53023496 53023582 -106576201 + (TC)n Simple_repeat Simple_repeat 1 86 0 2 989 312 27 0 0 chr3 53023582 53023619 -106576164 + (TG)n Simple_repeat Simple_repeat 2 38 0 2 989 503 13 53 0 chr3 53023739 53023815 -106575968 + (TA)n Simple_repeat Simple_repeat 1 80 0 2 989 1164 55 14 0 chr3 53024183 53024328 -106575455 + B1_Mus2 SINE Alu 1 147 0 2 989 406 231 112 53 chr3 53025441 53025610 -106574173 - MIRb SINE MIR -56 212 34 2 989 270 0 0 0 chr3 53029739 53029769 -106570014 + (TG)n Simple_repeat Simple_repeat 1 30 0 2 989 21 0 0 0 chr3 53030225 53030246 -106569537 + AT_rich Low_complexity Low_complexity 1 21 0 3 989 790 229 31 16 chr3 53030655 53030846 -106568937 - B3A SINE B2 -1 197 4 3 989 591 40 0 0 chr3 53031106 53031180 -106568603 + (TC)n Simple_repeat Simple_repeat 2 75 0 3 989 362 286 52 68 chr3 53031961 53032152 -106567631 + LTR82B Low_complexity ERVL 67 254 -576 3 989 21 0 0 0 chr3 53032213 53032234 -106567549 + AT_rich Low_complexity Low_complexity 1 21 0 3 989 358 334 164 33 chr3 53032280 53032639 -106567144 - LTR33B LTR ERVL -32 471 66 3 989 207 0 0 0 chr3 53033249 53033272 -106566511 + (T)n Simple_repeat Simple_repeat 1 23 0 3 989 278 182 15 0 chr3 53035823 53035889 -106563894 + (CATA)n Simple_repeat Simple_repeat 1 67 0 3 989 1230 108 48 21 chr3 53036155 53036344 -106563439 + B2_Mm2 SINE B2 1 194 -1 3 989 218 81 0 26 chr3 53036345 53036383 -106563400 + (GAAAA)n Simple_repeat Simple_repeat 3 39 0 3 989 479 230 168 55 chr3 53036680 53036882 -106562901 + RLTR5_Mm LTR ERV1 397 621 -7 4 989 855 186 35 11 chr3 53038758 53038932 -106560851 - B3 SINE B2 -38 178 1 4 989 832 271 54 98 chr3 53039650 53039986 -106559797 + MTE2a LTR MaLR 1 321 -58 4 989 281 324 39 0 chr3 53040123 53040225 -106559558 - MER58B DNA MER1_type -17 324 219 4 989 399 21 0 0 chr3 53040618 53040666 -106559117 + (CA)n Simple_repeat Simple_repeat 2 49 0 4 989 708 231 104 35 chr3 53041605 53041807 -106557976 - B3 SINE B2 0 216 1 4 989 251 148 0 36 chr3 53042138 53042194 -106557589 + CT-rich Low_complexity Low_complexity 3 56 0 4 989 3949 107 49 40 chr3 53042938 53043534 -106556249 - MT2B LTR ERVL 0 601 1 4 989 586 286 12 6 chr3 53044144 53044309 -106555474 + B3A SINE B2 5 170 -28 4 989 276 282 0 0 chr3 53044978 53045049 -106554734 + G-rich Low_complexity Low_complexity 4 74 0 4 989 589 214 71 0 chr3 53045385 53045511 -106554272 - B1_Mur3 SINE Alu -6 143 9 5 989 1152 225 130 25 chr3 53046729 53047053 -106552730 + ORR1E LTR MaLR 2 359 0 5 989 357 291 73 13 chr3 53047107 53047257 -106552526 + LTR82A LTR ERVL 233 391 -481 5 989 340 286 53 9 chr3 53047306 53047419 -106552364 + MamRep38 DNA hAT 6 123 -172 5 989 935 137 0 0 chr3 53047618 53047757 -106552026 - B1_Mur4 SINE Alu -10 140 2 5 989 290 362 8 17 chr3 53047938 53047968 -106551815 - ID_B1 SINE B4 -21 203 87 5 989 321 302 0 23 chr3 53047968 53048056 -106551727 - PB1D10 SINE Alu -26 91 6 5 989 324 300 91 40 chr3 53048059 53048086 -106551697 + LTR82A LTR ERVL 650 676 -196 5 989 318 50 0 0 chr3 53048086 53048126 -106551657 + (TTTG)n Simple_repeat Simple_repeat 3 42 0 5 989 324 300 91 40 chr3 53048126 53048275 -106551508 + LTR82A LTR ERVL 677 836 -36 5 989 1369 87 22 0 chr3 53048275 53048459 -106551324 + B2_Mm2 SINE B2 2 189 -6 5 989 324 300 91 40 chr3 53048459 53048479 -106551304 + LTR82A LTR ERVL 837 855 -17 5 989 2145 213 38 32 chr3 53050006 53050534 -106549249 - RMER5 LTR ERV1 0 534 4 5 989 433 339 69 0 chr3 53050695 53050913 -106548870 - MER2 DNA MER2_type -28 317 85 6 989 418 265 295 0 chr3 53051121 53051287 -106548496 + B3 SINE B2 2 216 0 6 989 313 315 55 41 chr3 53051384 53051717 -106548066 + MTEb LTR MaLR 29 379 0 6 989 330 225 0 0 chr3 53053068 53053148 -106546635 + (TG)n Simple_repeat Simple_repeat 2 81 0 6 989 207 0 0 0 chr3 53053288 53053311 -106546472 + (TG)n Simple_repeat Simple_repeat 1 23 0 6 989 267 230 39 39 chr3 53053417 53053494 -106546289 + (TATATG)n Simple_repeat Simple_repeat 5 81 0 6 989 3466 25 5 0 chr3 53054761 53055155 -106544628 + MTA_Mm LTR MaLR 1 396 0 6 989 1237 259 83 22 chr3 53055247 53055693 -106544090 - RMER5 LTR ERV1 -17 517 45 6 989 722 43 11 0 chr3 53055913 53056007 -106543776 + (TCTA)n Simple_repeat Simple_repeat 2 96 0 6 989 2734 194 38 29 chr3 53057972 53058212 -106541571 - Lx5 LINE L1 -10 7040 6793 6 989 2723 59 101 0 chr3 53058212 53058569 -106541214 - MTA_Mm LTR MaLR 0 396 4 7 989 306 0 0 0 chr3 53058569 53058603 -106541180 + (CA)n Simple_repeat Simple_repeat 2 35 0 7 989 2734 194 38 29 chr3 53058603 53058913 -106540870 - Lx5 LINE L1 -258 6792 6485 6 989 215 79 0 26 chr3 53058913 53058952 -106540831 + (CAAAAA)n Simple_repeat Simple_repeat 5 42 0 7 989 240 250 29 0 chr3 53059098 53059166 -106540617 + (TATG)n Simple_repeat Simple_repeat 1 70 0 7 989 207 371 55 42 chr3 53059574 53059881 -106539902 + L2c LINE L2 3074 3384 -3 7 989 340 183 0 0 chr3 53060009 53060069 -106539714 + B3A SINE B2 84 143 -55 7 989 234 0 0 0 chr3 53060080 53060106 -106539677 + (CA)n Simple_repeat Simple_repeat 1 26 0 7 989 348 24 0 0 chr3 53060189 53060230 -106539553 + (CA)n Simple_repeat Simple_repeat 2 42 0 7 989 419 0 20 0 chr3 53060230 53060280 -106539503 + (TA)n Simple_repeat Simple_repeat 2 53 0 7 989 598 258 6 63 chr3 53061083 53061257 -106538526 + B4 SINE B4 129 292 0 7 989 2408 135 24 20 chr3 53061416 53061825 -106537958 - IAPLTR2a LTR ERVK 0 411 1 8 989 276 30 0 0 chr3 53062945 53062978 -106536805 + (CA)n Simple_repeat Simple_repeat 1 33 0 8 989 224 302 34 25 chr3 53064981 53065100 -106534683 + (CATA)n Simple_repeat Simple_repeat 4 123 0 8 989 204 67 0 0 chr3 53066180 53066210 -106533573 + (A)n Simple_repeat Simple_repeat 1 30 0 8 989 364 295 92 21 chr3 53066280 53066422 -106533361 + RSINE1 SINE B4 14 165 0 8 989 252 77 0 0 chr3 53066588 53066627 -106533156 + (TG)n Simple_repeat Simple_repeat 2 40 0 8 989 313 380 9 0 chr3 53067425 53067538 -106532245 + ID_B1 SINE B4 104 217 -7 8 989 588 202 118 56 chr3 53067559 53067737 -106532046 + B3A SINE B2 10 198 0 8 989 588 201 43 29 chr3 53068623 53068761 -106531022 + B3 SINE B2 25 164 -52 8 989 344 77 0 19 chr3 53068762 53068815 -106530968 + (CATA)n Simple_repeat Simple_repeat 4 55 0 8 989 233 75 0 24 chr3 53068878 53068919 -106530864 + (TAA)n Simple_repeat Simple_repeat 2 41 0 9 989 255 31 0 0 chr3 53069260 53069292 -106530491 + (TTCC)n Simple_repeat Simple_repeat 1 32 0 9 989 987 161 0 0 chr3 53069292 53069472 -106530311 + CT-rich Low_complexity Low_complexity 1 180 0 9 989 401 292 0 0 chr3 53069476 53069572 -106530211 - BC1_Mm scRNA scRNA -54 98 3 9 989 452 167 14 0 chr3 53069773 53069845 -106529938 - Lx8 LINE L1 -1044 6429 6357 9 989 1496 337 50 20 chr3 53069861 53070555 -106529228 + Lx8 LINE L1 6737 7451 -22 9 989 27 49 0 0 chr3 53070556 53070597 -106529186 + AT_rich Low_complexity Low_complexity 1 41 0 9 989 2293 239 36 50 chr3 53071687 53072356 -106527427 + Lx5 LINE L1 6455 7034 -16 9 989 476 336 53 29 chr3 53072388 53072633 -106527150 - LTR82B Low_complexity ERVL -372 458 208 9 989 598 273 79 20 chr3 53073983 53074185 -106525598 + B3 SINE B2 3 216 0 9 989 191 114 29 0 chr3 53074318 53074353 -106525430 + (CA)n Simple_repeat Simple_repeat 1 36 0 1 989 303 302 58 78 chr3 53074601 53074996 -106524787 + RLTR12B LTR ERVK 112 498 -30 1 989 780 194 0 0 chr3 53075181 53075412 -106524371 + (CA)n Simple_repeat Simple_repeat 1 231 0 1 989 300 296 12 0 chr3 53077144 53077225 -106522558 + CT-rich Low_complexity Low_complexity 3 84 0 1 989 1221 112 0 4 chr3 53078094 53078363 -106521420 + (TCC)n Simple_repeat Simple_repeat 1 268 0 1 989 26 30 0 0 chr3 53078439 53078472 -106521311 + AT_rich Low_complexity Low_complexity 1 33 0 1 989 517 273 79 0 chr3 53078572 53078711 -106521072 - B4A SINE B4 -142 150 1 1 989 1216 178 15 0 chr3 53078912 53079114 -106520669 + B3 SINE B2 2 206 -10 1 989 669 248 71 1 chr3 53079351 53079532 -106520251 + B3 SINE B2 2 195 -3 1 989 352 292 54 70 chr3 53079552 53080030 -106519753 + L1M2 LINE L1 5040 5520 -792 1 989 414 85 0 0 chr3 53080364 53080423 -106519360 + (TTTA)n Simple_repeat Simple_repeat 2 60 0 1 989 216 182 0 0 chr3 53080425 53080469 -106519314 + CT-rich Low_complexity Low_complexity 3 46 0 1 989 219 340 87 41 chr3 53081813 53082009 -106517774 + MIRb SINE MIR 52 256 -12 1 989 237 247 49 128 chr3 53082240 53082342 -106517441 - MER115 DNA Tip100 -309 384 291 1 989 750 184 40 17 chr3 53083442 53083619 -106516164 + B2_Mm2 SINE B2 1 181 -14 1 123 9944 159 45 21 chr3 53083713 53084527 -106515256 + Lx6 LINE L1 3992 4821 -1059 1 990 316 0 0 43 chr3 53084527 53084573 -106515210 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 1 990 1088 51 0 0 chr3 53084573 53084711 -106515072 - B1_Mm SINE Alu -9 138 1 1 990 9944 167 67 26 chr3 53084711 53086150 -106513633 + Lx6 LINE L1 4822 6344 -1116 1 990 1670 61 5 5 chr3 53086156 53086370 -106513413 - L1Md_F2 LINE L1 -435 6147 5934 1 990 2456 82 30 35 chr3 53086370 53086736 -106513047 + L1Md_F2 LINE L1 6219 6582 0 1 990 3795 215 84 104 chr3 53086758 53086888 -106512895 + Lx6 LINE L1 6353 6493 -967 1 990 2423 160 40 5 chr3 53086888 53087291 -106512492 + MTC LTR MaLR 5 421 0 1 990 3795 215 84 104 chr3 53087291 53088290 -106511493 + Lx6 LINE L1 6494 7459 -1 1 990 320 284 18 81 chr3 53088351 53088462 -106511321 + MLT1A0 LTR MaLR 17 120 -245 1 990 858 193 10 57 chr3 53089135 53089327 -106510456 + B2_Mm2 SINE B2 2 184 -11 1 990 617 214 6 0 chr3 53089467 53089626 -106510157 + (TA)n Simple_repeat Simple_repeat 2 161 0 1 990 346 272 18 76 chr3 53089793 53089964 -106509819 - L1M2 LINE L1 -1655 4488 4328 1 990 1366 83 16 6 chr3 53090231 53090413 -106509370 - B2_Mm2 SINE B2 -10 185 2 1 990 219 69 0 0 chr3 53090655 53090684 -106509099 + (TC)n Simple_repeat Simple_repeat 2 30 0 1 990 387 0 0 0 chr3 53090685 53090728 -106509055 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 990 868 247 137 39 chr3 53091376 53091713 -106508070 - ORR1D2 LTR MaLR 0 370 1 1 990 452 254 44 0 chr3 53091760 53091873 -106507910 + RMER17C LTR ERVK 1 118 -292 1 990 4104 162 60 11 chr3 53091873 53092653 -106507130 + RMER13A LTR ERVK 1 818 -42 1 990 766 196 171 27 chr3 53092638 53092895 -106506888 + RMER17C LTR ERVK 117 410 0 1 990 1490 68 0 31 chr3 53094584 53094780 -106505003 - B2_Mm2 SINE B2 -3 192 3 1 990 207 0 0 0 chr3 53094806 53094829 -106504954 + (TTG)n Simple_repeat Simple_repeat 2 24 0 1 990 241 210 12 36 chr3 53094830 53094914 -106504869 + (TTTG)n Simple_repeat Simple_repeat 3 84 0 1 990 564 250 84 58 chr3 53094916 53095107 -106504676 - B3A SINE B2 0 198 3 1 990 640 262 10 58 chr3 53095155 53095362 -106504421 + B3A SINE B2 2 198 0 1 990 27 73 0 0 chr3 53095406 53095461 -106504322 + AT_rich Low_complexity Low_complexity 1 55 0 1 990 639 271 55 6 chr3 53096136 53096318 -106503465 + B3A SINE B2 3 193 -5 1 990 1005 171 86 20 chr3 53096507 53096704 -106503079 + B3 SINE B2 2 211 -5 1 990 438 293 78 96 chr3 53097352 53097696 -106502087 - L1MB8 LINE L1 -16 6162 5825 1 990 318 362 18 67 chr3 53097703 53097928 -106501855 - MER58A DNA MER1_type -6 218 5 1 990 385 153 18 48 chr3 53098392 53098557 -106501226 + (TA)n Simple_repeat Simple_repeat 1 160 0 1 990 721 232 187 15 chr3 53098566 53098839 -106500944 - MTEb LTR MaLR -38 341 22 1 990 1368 230 103 27 chr3 53099658 53100025 -106499758 + Lx9 LINE L1 6382 6776 -868 1 990 1918 199 29 21 chr3 53100026 53100401 -106499382 + ORR1C1 LTR MaLR 1 378 0 1 990 1570 151 138 84 chr3 53100538 53100930 -106498853 + RMER4A LTR ERVK 54 466 0 1 990 477 205 106 11 chr3 53102015 53102185 -106497598 - MTD LTR MaLR 0 419 199 1 990 505 286 76 14 chr3 53102186 53102409 -106497374 - L1MA4 LINE L1 -326 5974 5738 1 990 806 271 24 0 chr3 53103073 53103280 -106496503 - B3 SINE B2 -3 213 2 1 990 760 174 8 0 chr3 53103455 53103587 -106496196 - B1_Mur3 SINE Alu 0 149 17 1 990 210 37 0 0 chr3 53104570 53104597 -106495186 + (TCTG)n Simple_repeat Simple_repeat 2 28 0 1 990 357 218 184 0 chr3 53106613 53106700 -106493083 + B1F1 SINE Alu 47 149 0 1 990 1926 204 65 5 chr3 53106832 53107230 -106492553 - Lx5 LINE L1 -688 6362 5941 1 990 546 110 0 12 chr3 53107229 53107312 -106492471 + Lx4B LINE L1 6398 6479 -579 1 990 3866 117 56 32 chr3 53107329 53108020 -106491763 + RLTR19B LTR ERVK 3 710 -5 1 990 297 0 0 0 chr3 53108023 53108056 -106491727 + (TG)n Simple_repeat Simple_repeat 2 34 0 1 990 257 241 110 28 chr3 53108864 53109009 -106490774 + L1MEg LINE L1 2102 2258 -3984 1 990 395 299 144 31 chr3 53109142 53109656 -106490127 + L1MEg LINE L1 2469 3040 -3106 1 990 656 240 82 0 chr3 53109715 53109861 -106489922 + B3 SINE B2 11 168 -48 1 990 4494 164 32 24 chr3 53109853 53110746 -106489037 + RLTR25A LTR ERVK 7 907 -196 1 990 4714 161 57 69 chr3 53110800 53111635 -106488148 + RLTR25A LTR ERVK 21 882 -221 1 990 360 0 0 0 chr3 53111635 53111675 -106488108 + (CA)n Simple_repeat Simple_repeat 2 41 0 1 990 4714 161 57 69 chr3 53111675 53111753 -106488030 + RLTR25A LTR ERVK 883 939 -164 1 990 207 114 0 0 chr3 53111753 53111788 -106487995 + (TA)n Simple_repeat Simple_repeat 1 35 0 1 990 4714 161 57 69 chr3 53111788 53111970 -106487813 + RLTR25A LTR ERVK 940 1102 -1 1 990 469 274 124 15 chr3 53112246 53112446 -106487337 + L1MEg LINE L1 3464 3689 -2457 1 990 845 226 118 52 chr3 53112474 53112763 -106487020 - ORR1D2 LTR MaLR -1 369 62 1 990 27 0 0 0 chr3 53112838 53112865 -106486918 + AT_rich Low_complexity Low_complexity 1 27 0 1 990 474 325 25 0 chr3 53113784 53113944 -106485839 - LTR40a LTR ERVL -355 164 1 1 990 418 96 14 14 chr3 53114364 53114438 -106485345 + (TCC)n Simple_repeat Simple_repeat 1 74 0 1 990 744 268 49 11 chr3 53114876 53115061 -106484722 - B4 SINE B4 -18 274 83 1 990 425 243 139 39 chr3 53115073 53115253 -106484530 - Lx8 LINE L1 -2 7471 7274 1 990 310 161 0 35 chr3 53115282 53115340 -106484443 - Lx8 LINE L1 -342 7131 7076 1 990 825 119 244 17 chr3 53115413 53115593 -106484190 - URR1A DNA MER1_type -5 221 1 1 990 298 250 0 0 chr3 53115610 53115678 -106484105 - Lx8 LINE L1 -515 6958 6891 1 990 243 281 11 58 chr3 53115691 53115778 -106484005 - B4 SINE B4 -208 84 2 1 990 2442 161 44 12 chr3 53116721 53117129 -106482654 - MTC LTR MaLR 0 421 1 1 990 232 290 135 31 chr3 53117267 53117459 -106482324 - Kanga2_a DNA Tc2 -230 658 447 1 990 403 296 13 0 chr3 53117689 53117827 -106481956 + MER74A LTR ERVL 16 194 -428 1 990 1515 68 11 0 chr3 53117941 53118132 -106481651 - B2_Mm1t SINE B2 0 193 1 1 990 2319 134 58 39 chr3 53118762 53119174 -106480609 - MTC LTR MaLR 0 421 2 1 990 271 318 53 20 chr3 53120127 53120278 -106479505 - MLT1C LTR MaLR -33 434 279 1 990 652 226 114 16 chr3 53120690 53120874 -106478909 + B3 SINE B2 1 202 -14 1 990 865 118 7 0 chr3 53121012 53121148 -106478635 + URR1A DNA MER1_type 79 215 -11 1 990 292 305 48 24 chr3 53121148 53121180 -106478603 - CYRA11_Mm Unknown Y-chromosome -298 319 148 1 990 409 363 77 19 chr3 53121452 53121921 -106477862 + L1M5 LINE L1 3329 3824 -2322 1 990 366 108 0 0 chr3 53121990 53122055 -106477728 + (CAGA)n Simple_repeat Simple_repeat 2 66 0 1 990 259 113 19 19 chr3 53122155 53122209 -106477574 + (CATATA)n Simple_repeat Simple_repeat 3 56 0 1 990 894 258 92 13 chr3 53122314 53122620 -106477163 + Lx8 LINE L1 6914 7243 -230 1 990 863 197 129 14 chr3 53123039 53123431 -106476352 - MT2A LTR ERVL 0 601 1 1 990 338 153 0 27 chr3 53124139 53124213 -106475570 + (CATA)n Simple_repeat Simple_repeat 4 75 0 1 990 467 191 0 0 chr3 53124412 53124501 -106475282 + B3A SINE B2 37 125 -73 1 990 2175 141 10 39 chr3 53124623 53125007 -106474776 - Lx4B LINE L1 -4 7054 6682 1 990 842 298 73 13 chr3 53125163 53125466 -106474317 + MLT1B LTR MaLR 3 323 -67 1 990 180 0 0 0 chr3 53125541 53125561 -106474222 + (TTTTG)n Simple_repeat Simple_repeat 3 22 0 1 990 798 251 40 15 chr3 53125599 53125797 -106473986 + B3 SINE B2 1 203 -13 1 990 189 0 0 0 chr3 53126181 53126202 -106473581 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 1 990 188 170 19 0 chr3 53126452 53126505 -106473278 + (TA)n Simple_repeat Simple_repeat 2 55 0 1 990 213 269 45 55 chr3 53127474 53127584 -106472199 - SUBTEL_sa Satellite Satellite -65 109 1 1 990 301 306 86 76 chr3 53127586 53127784 -106471999 + MTEb LTR MaLR 64 263 -116 1 990 27 29 0 0 chr3 53129326 53129360 -106470423 + AT_rich Low_complexity Low_complexity 1 34 0 1 990 2501 29 25 19 chr3 53129384 53129698 -106470085 - L1Md_F3 LINE L1 -13 6571 6256 1 990 348 289 0 0 chr3 53129699 53129775 -106470008 - PB1D10 SINE Alu -18 99 24 1 990 407 119 60 0 chr3 53130011 53130078 -106469705 - ORR1C1 LTR MaLR 0 378 308 1 990 807 90 16 0 chr3 53130131 53130253 -106469530 - B2_Mm2 SINE B2 -70 125 2 1 990 1638 181 47 68 chr3 53130253 53130595 -106469188 - ORR1C1 LTR MaLR -44 334 1 1 990 645 227 0 0 chr3 53132113 53132285 -106467498 + (TG)n Simple_repeat Simple_repeat 1 172 0 1 990 258 295 0 25 chr3 53133519 53133599 -106466184 - RCHARR1 DNA MER1_type -16 958 881 1 990 409 224 50 10 chr3 53133596 53133695 -106466088 + B3 SINE B2 90 192 -24 2 990 389 20 0 38 chr3 53135202 53135255 -106464528 - L1Md_F2 LINE L1 -284 6298 6248 2 990 2147 54 7 11 chr3 53135256 53135535 -106464248 + L1Md_F2 LINE L1 6304 6581 -1 2 990 180 0 0 0 chr3 53136179 53136199 -106463584 + (GAAA)n Simple_repeat Simple_repeat 4 23 0 2 990 647 157 0 0 chr3 53136606 53136714 -106463069 - B1_Mur2 SINE Alu -11 138 31 2 990 38 39 0 0 chr3 53137616 53137668 -106462115 + AT_rich Low_complexity Low_complexity 1 52 0 2 990 526 251 58 94 chr3 53138675 53138899 -106460884 + B3 SINE B2 1 216 0 2 990 486 138 0 0 chr3 53139571 53139680 -106460103 + (T)n Simple_repeat Simple_repeat 1 109 0 2 990 600 151 94 0 chr3 53139860 53139966 -106459817 - B1_Mur4 SINE Alu -8 142 27 2 990 366 294 0 52 chr3 53140277 53140392 -106459391 + PB1D10 SINE Alu 1 109 -8 2 990 346 249 35 12 chr3 53140417 53140588 -106459195 + GA-rich Low_complexity Low_complexity 5 179 0 2 990 219 139 0 0 chr3 53140608 53140644 -106459139 + (GGGGA)n Simple_repeat Simple_repeat 1 36 0 2 990 584 139 8 30 chr3 53141032 53141165 -106458618 + CT-rich Low_complexity Low_complexity 4 133 0 2 990 684 107 33 24 chr3 53141167 53141388 -106458395 + (TCTA)n Simple_repeat Simple_repeat 1 223 0 2 990 428 340 72 104 chr3 53141400 53141661 -106458122 - MLT2D LTR ERVL -52 362 93 2 990 1200 55 0 0 chr3 53141661 53141807 -106457976 + B1_Mus2 SINE Alu 2 147 0 2 990 428 340 72 104 chr3 53141807 53141919 -106457864 - MLT2D LTR ERVL -322 92 1 2 990 226 256 12 47 chr3 53142649 53142735 -106457048 - MLT1I LTR MaLR -90 321 239 2 990 266 339 42 0 chr3 53142786 53142904 -106456879 - MLT1I LTR MaLR -288 123 1 2 990 22 35 0 0 chr3 53143072 53143101 -106456682 + AT_rich Low_complexity Low_complexity 1 29 0 2 990 791 109 13 13 chr3 53143485 53143634 -106456149 + (GGGA)n Simple_repeat Simple_repeat 1 149 0 2 990 2705 138 22 8 chr3 53144235 53144730 -106455053 - RLTR28 LTR ERVL -21 503 2 2 990 185 65 32 0 chr3 53145192 53145223 -106454560 + (GAAA)n Simple_repeat Simple_repeat 4 35 0 2 990 1190 56 0 0 chr3 53146204 53146347 -106453436 + B1_Mm SINE Alu 1 143 -4 2 990 22 0 0 0 chr3 53146752 53146774 -106453009 + AT_rich Low_complexity Low_complexity 1 22 0 2 990 2408 245 91 33 chr3 53146943 53147822 -106451961 + RMER13A LTR ERVK 14 848 -12 2 990 278 256 133 50 chr3 53147987 53148168 -106451615 - RMER2 LTR ERV1 -5 562 367 2 990 730 223 122 46 chr3 53148189 53148405 -106451378 - RMER2 LTR ERV1 -299 268 1 2 990 275 318 54 23 chr3 53148916 53149045 -106450738 - RMER15 LTR ERVL -19 556 424 2 990 26 0 0 0 chr3 53150261 53150287 -106449496 + AT_rich Low_complexity Low_complexity 1 26 0 2 990 186 43 0 0 chr3 53150313 53150336 -106449447 + (A)n Simple_repeat Simple_repeat 1 23 0 2 990 4148 75 5 0 chr3 53150538 53151111 -106448672 - MT2B2 LTR ERVL -8 576 1 2 990 399 21 0 0 chr3 53151245 53151293 -106448490 + (TC)n Simple_repeat Simple_repeat 2 49 0 2 990 315 0 0 0 chr3 53151293 53151327 -106448456 + (TG)n Simple_repeat Simple_repeat 2 36 0 2 990 274 316 111 23 chr3 53152857 53153074 -106446709 + Charlie19a DNA Charlie 67 302 -84 2 990 330 276 19 19 chr3 53154326 53154433 -106445350 + L1MEe LINE L1 133 239 -4615 2 990 22 35 0 0 chr3 53154986 53155015 -106444768 + AT_rich Low_complexity Low_complexity 1 29 0 2 990 253 267 54 22 chr3 53155123 53155215 -106444568 + RSINE1 SINE B4 4 98 -67 2 990 283 259 36 36 chr3 53155199 53155283 -106444500 + B1F SINE Alu 42 141 -8 2 990 221 307 13 51 chr3 53155297 53155376 -106444407 + ID4_ SINE ID 6 81 -2 2 990 378 0 0 0 chr3 53155443 53155485 -106444298 + (TG)n Simple_repeat Simple_repeat 2 43 0 2 990 265 233 151 0 chr3 53155487 53155573 -106444210 - RSINE1 SINE B4 -63 102 4 2 990 599 238 20 39 chr3 53155907 53156060 -106443723 + RSINE1 SINE B4 16 165 0 2 990 5391 36 3 0 chr3 53156081 53156712 -106443071 + L1Md_T LINE L1 5947 6579 -3 2 990 218 211 0 0 chr3 53158010 53158048 -106441735 + T-rich Low_complexity Low_complexity 5 42 0 2 990 516 204 0 0 chr3 53158068 53158171 -106441612 + MER58D DNA MER1_type 284 386 0 2 990 24 32 0 0 chr3 53158827 53158858 -106440925 + AT_rich Low_complexity Low_complexity 1 31 0 2 990 2097 270 85 37 chr3 53158865 53159645 -106440138 + Lx8 LINE L1 6601 7417 -56 2 990 1033 171 55 9 chr3 53161460 53161555 -106438228 - RLTR16 LTR ERVK 0 505 413 2 990 390 91 0 0 chr3 53161555 53161610 -106438173 + (CA)n Simple_repeat Simple_repeat 2 56 0 2 990 1033 171 55 9 chr3 53161610 53161733 -106438050 - RLTR16 LTR ERVK -93 412 279 2 990 267 104 0 94 chr3 53161733 53161786 -106437997 + Lx7 LINE L1 4976 5023 -857 2 990 1384 203 3 42 chr3 53161787 53162126 -106437657 - RMER19C LTR ERVK 0 611 318 2 990 3831 149 78 25 chr3 53162127 53162346 -106437437 + Lx7 LINE L1 5074 5292 -588 2 990 2856 92 19 24 chr3 53162346 53162768 -106437015 - BGLII_Mus LTR ERVK -2 420 1 2 990 3831 149 78 25 chr3 53162768 53163209 -106436574 + Lx7 LINE L1 5293 5766 -114 2 990 2637 216 22 42 chr3 53163209 53163832 -106435951 + RMER19C LTR ERVK 1 611 0 2 990 3831 198 54 29 chr3 53163832 53164345 -106435438 + Lx7 LINE L1 5767 6294 -1402 2 990 495 289 110 5 chr3 53164650 53164841 -106434942 + B3 SINE B2 1 211 -5 2 990 1436 238 23 136 chr3 53164891 53165047 -106434736 + RMER19C LTR ERVK 142 283 -328 2 990 1116 88 0 0 chr3 53165047 53165194 -106434589 + B1_Mm SINE Alu 1 147 0 2 990 1436 238 23 136 chr3 53165194 53165567 -106434216 + RMER19C LTR ERVK 284 611 0 2 990 26 0 0 0 chr3 53166097 53166123 -106433660 + AT_rich Low_complexity Low_complexity 1 26 0 2 990 293 0 27 0 chr3 53166178 53166215 -106433568 + (TG)n Simple_repeat Simple_repeat 2 39 0 2 990 279 333 50 57 chr3 53166588 53166728 -106433055 - MLT1F1 LTR MaLR -329 240 102 2 990 276 306 35 0 chr3 53166804 53166889 -106432894 + HERV16-int LTR ERVL 361 448 -4548 2 990 4366 17 0 0 chr3 53167598 53168080 -106431703 - LTRIS_Mm LTR ERV1 0 482 1 2 990 38124 37 13 15 chr3 53168080 53172859 -106426924 - MuRRS-int LTR ERV1 0 4690 1 2 990 4229 21 2 4 chr3 53172859 53173342 -106426441 - LTRIS_Mm LTR ERV1 0 482 1 2 990 188 67 0 32 chr3 53174062 53174093 -106425690 + (CAAAA)n Simple_repeat Simple_repeat 1 30 0 2 990 1075 207 34 0 chr3 53174264 53174472 -106425311 + B3 SINE B2 1 215 -1 2 990 596 195 161 8 chr3 53174500 53174624 -106425159 + B1_Mur2 SINE Alu 1 143 -6 2 990 396 0 0 0 chr3 53174629 53174673 -106425110 + (TAAA)n Simple_repeat Simple_repeat 2 45 0 2 990 276 236 0 0 chr3 53174864 53174936 -106424847 + GA-rich Low_complexity Low_complexity 2 73 0 2 990 295 229 0 30 chr3 53175472 53175571 -106424212 + CT-rich Low_complexity Low_complexity 4 99 0 2 990 209 233 0 0 chr3 53176251 53176294 -106423489 + A-rich Low_complexity Low_complexity 1 43 0 2 990 1611 43 0 0 chr3 53176410 53176596 -106423187 - B2_Mm1a SINE B2 -5 188 3 2 990 240 186 0 0 chr3 53176653 53176712 -106423071 + T-rich Low_complexity Low_complexity 1 59 0 2 990 248 241 13 0 chr3 53177840 53177919 -106421864 + (CA)n Simple_repeat Simple_repeat 1 80 0 2 990 299 346 8 0 chr3 53177938 53178065 -106421718 + (CA)n Simple_repeat Simple_repeat 1 128 0 2 990 369 0 0 0 chr3 53178395 53178436 -106421347 + (CA)n Simple_repeat Simple_repeat 1 41 0 2 990 315 285 141 63 chr3 53179208 53179414 -106420369 + MLT1J-int LTR MaLR 127 348 -1039 2 990 262 281 44 11 chr3 53179550 53179640 -106420143 + MLT1J-int LTR MaLR 850 942 -445 2 990 304 262 24 0 chr3 53180285 53180369 -106419414 - ORR1E LTR MaLR -5 374 289 2 990 444 250 0 0 chr3 53180828 53180956 -106418827 + CT-rich Low_complexity Low_complexity 1 128 0 2 990 630 200 217 0 chr3 53182235 53182415 -106417368 + URR1A DNA MER1_type 5 223 -3 2 990 264 348 73 6 chr3 53182543 53182708 -106417075 - MLT1D LTR MaLR -308 197 22 2 990 347 280 87 40 chr3 53182883 53183032 -106416751 - ORR1E LTR MaLR -179 180 25 2 990 1012 238 0 5 chr3 53183834 53184041 -106415742 + B3 SINE B2 3 208 -8 2 990 814 134 7 0 chr3 53184282 53184424 -106415359 - URR1B DNA MER1_type 0 225 83 2 990 233 57 0 28 chr3 53184602 53184638 -106415145 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 2 990 291 235 14 14 chr3 53184853 53184922 -106414861 + B3A SINE B2 7 75 -123 2 990 259 289 5 27 chr3 53185031 53185144 -106414639 + ID2 SINE ID 5 116 -36 2 990 225 312 0 21 chr3 53185633 53185728 -106414055 + MIR SINE MIR 137 229 -33 2 990 190 159 44 22 chr3 53186496 53186541 -106413242 - MIRc SINE MIR -116 152 107 2 990 2285 91 31 12 chr3 53186907 53187228 -106412555 + ORR1A2 LTR MaLR 1 327 0 2 990 340 265 16 49 chr3 53187802 53187925 -106411858 + GA-rich Low_complexity Low_complexity 2 120 0 2 990 493 32 0 0 chr3 53188065 53188127 -106411656 - ORR1A2 LTR MaLR -8 319 258 2 990 891 118 86 12 chr3 53188125 53188288 -106411495 - B2_Mm2 SINE B2 -7 188 14 2 990 1994 67 0 22 chr3 53188287 53188562 -106411221 - ORR1A2 LTR MaLR -58 269 1 2 990 508 288 29 5 chr3 53188572 53188708 -106411075 - B3A SINE B2 -41 157 23 2 990 21 0 0 0 chr3 53189027 53189048 -106410735 + AT_rich Low_complexity Low_complexity 1 21 0 2 990 1399 87 16 0 chr3 53189116 53189301 -106410482 + B2_Mm2 SINE B2 1 188 -7 2 990 488 275 40 28 chr3 53189434 53189610 -106410173 - MLT1B LTR MaLR 0 390 213 2 990 1843 159 17 82 chr3 53189696 53190100 -106409683 + RLTR1B LTR ERV1 135 512 0 2 990 269 319 213 5 chr3 53190100 53190277 -106409506 - MLT1B LTR MaLR -172 218 3 2 990 1406 231 57 8 chr3 53190450 53190803 -106408980 - MTE2b LTR MaLR -5 374 5 2 990 180 0 0 0 chr3 53191806 53191826 -106407957 + (T)n Simple_repeat Simple_repeat 1 20 0 2 990 396 0 0 0 chr3 53192421 53192465 -106407318 + (CAGA)n Simple_repeat Simple_repeat 4 47 0 2 990 1182 131 208 23 chr3 53192618 53192883 -106406900 - RLTR23 LTR ERV1 0 430 117 2 990 468 223 239 32 chr3 53192930 53193148 -106406635 - RLTR23 LTR ERV1 -167 263 1 2 990 405 217 33 0 chr3 53193608 53193700 -106406083 + B3 SINE B2 122 216 0 2 990 197 279 11 65 chr3 53193776 53193868 -106405915 - L2 LINE L2 -927 2492 2406 2 990 198 71 0 0 chr3 53193928 53193956 -106405827 + (TA)n Simple_repeat Simple_repeat 2 29 0 2 990 495 284 213 36 chr3 53194285 53194700 -106405083 + RMER5 LTR ERV1 46 534 0 2 990 265 174 78 104 chr3 53195201 53195278 -106404505 + ID_B1 SINE B4 129 203 -21 2 990 1791 172 63 6 chr3 53198561 53198923 -106400860 - MTD LTR MaLR -25 394 12 3 990 278 309 136 6 chr3 53199672 53199841 -106399942 + L1MDa LINE L1 56 246 -6387 3 990 242 243 14 28 chr3 53200016 53200088 -106399695 + (TATATG)n Simple_repeat Simple_repeat 6 76 0 3 990 1578 182 48 56 chr3 53200088 53200501 -106399282 - RMER17C LTR ERVK 0 410 1 3 990 2422 117 32 18 chr3 53200501 53200924 -106398859 - RMER17C-int LTR ERVK 0 3238 2764 3 990 2258 134 113 12 chr3 53201304 53201728 -106398055 - RMER19C LTR ERVK -144 467 1 3 990 370 241 8 87 chr3 53201820 53201947 -106397836 - RLTR23 LTR ERV1 -3 427 311 3 990 22 0 0 0 chr3 53202284 53202306 -106397477 + AT_rich Low_complexity Low_complexity 1 22 0 3 990 212 279 0 0 chr3 53202455 53202516 -106397267 + C-rich Low_complexity Low_complexity 1 61 0 3 990 636 254 83 74 chr3 53202707 53202937 -106396846 + L1MDa LINE L1 243 474 -6159 3 990 264 30 0 0 chr3 53203353 53203386 -106396397 + (TC)n Simple_repeat Simple_repeat 1 33 0 3 990 511 218 175 98 chr3 53203527 53203710 -106396073 + B3A SINE B2 1 197 -1 3 990 348 314 109 40 chr3 53204916 53205464 -106394319 + Charlie2b DNA MER1_type 1953 2538 -244 3 990 326 329 87 35 chr3 53206384 53206614 -106393169 - L2a LINE L2 -2 3424 3183 3 990 201 74 0 0 chr3 53206614 53206641 -106393142 + (AGGGGG)n Simple_repeat Simple_repeat 1 27 0 3 990 226 330 34 11 chr3 53206700 53206789 -106392994 + PB1D9 SINE Alu 1 91 -29 3 990 1236 125 11 0 chr3 53206800 53206976 -106392807 + B2_Mm1t SINE B2 2 179 -14 3 990 310 122 391 22 chr3 53207008 53207100 -106392683 + B2_Mm2 SINE B2 47 172 -23 3 990 582 15 0 0 chr3 53207119 53207186 -106392597 + (GAAA)n Simple_repeat Simple_repeat 2 68 0 3 990 2951 244 74 10 chr3 53207260 53207975 -106391808 + RMER1A Other Other 1 761 -269 3 990 758 286 112 32 chr3 53209321 53209668 -106390115 + MLT2D LTR ERVL 1 375 -39 3 990 537 141 16 53 chr3 53209712 53209899 -106389884 + (CA)n Simple_repeat Simple_repeat 1 180 0 3 990 277 319 82 14 chr3 53209899 53210045 -106389738 - RMER10B LTR ERVL 0 398 243 3 990 243 170 0 0 chr3 53210298 53210345 -106389438 + (CA)n Simple_repeat Simple_repeat 2 48 0 3 990 608 184 7 0 chr3 53210368 53210520 -106389263 + (CA)n Simple_repeat Simple_repeat 2 154 0 3 990 1191 11 0 48 chr3 53211329 53211515 -106388268 + (TCTCCC)n Simple_repeat Simple_repeat 4 180 0 3 990 21 0 0 0 chr3 53211905 53211926 -106387857 + AT_rich Low_complexity Low_complexity 1 21 0 3 990 2309 174 38 26 chr3 53212333 53212829 -106386954 + RLTR16 LTR ERVK 4 505 0 3 990 2835 150 22 6 chr3 53213449 53213939 -106385844 + RLTR16 LTR ERVK 4 501 -4 3 991 1481 208 175 63 chr3 53215362 53215871 -106383912 - RMER2 LTR ERV1 0 567 2 3 991 431 239 103 26 chr3 53217190 53217345 -106382438 + RLTR28B LTR ERVL 1 167 -314 3 991 897 0 0 0 chr3 53217345 53217517 -106382266 + L1Md_A LINE L1 6472 6582 0 3 991 325 284 86 20 chr3 53217521 53217672 -106382111 + RLTR28B LTR ERVL 183 343 -138 3 991 456 72 0 0 chr3 53218236 53218305 -106381478 + (TG)n Simple_repeat Simple_repeat 2 70 0 3 991 183 80 0 0 chr3 53218305 53218329 -106381454 + (TA)n Simple_repeat Simple_repeat 2 26 0 3 991 395 298 15 0 chr3 53218418 53218549 -106381234 - ID_B1 SINE B4 -81 143 11 3 991 234 172 103 59 chr3 53218612 53218680 -106381103 + tRNA-Ala-GCY_ tRNA tRNA 1 71 -4 3 991 1394 95 11 0 chr3 53220642 53220831 -106378952 + B2_Mm1t SINE B2 2 192 -1 3 991 800 268 15 5 chr3 53220851 53221057 -106378726 - B3 SINE B2 -6 210 3 3 991 358 241 80 29 chr3 53221493 53221630 -106378153 + L1MEd LINE L1 42 185 -5934 3 991 198 0 0 0 chr3 53222035 53222057 -106377726 + (GA)n Simple_repeat Simple_repeat 1 22 0 3 991 261 352 41 8 chr3 53222058 53222181 -106377602 + MER2B DNA MER2_type 200 326 -10 3 991 237 163 0 0 chr3 53222274 53222323 -106377460 + (CAGA)n Simple_repeat Simple_repeat 2 50 0 3 991 396 287 29 68 chr3 53222373 53222686 -106377097 + L1MC4a LINE L1 7487 7892 -103 3 991 1665 170 20 61 chr3 53222803 53223148 -106376635 + RMER1B Other Other 736 1066 0 3 991 1094 198 19 0 chr3 53223162 53223369 -106376414 + B3 SINE B2 5 215 -1 3 991 1423 161 5 0 chr3 53223928 53224152 -106375631 - URR1B DNA MER1_type 0 225 1 3 991 355 353 23 0 chr3 53224339 53224472 -106375311 - MIR3 SINE MIR -2 206 71 3 991 237 357 12 0 chr3 53224670 53224754 -106375029 - B1F SINE Alu -12 137 53 3 991 276 262 8 177 chr3 53224881 53225011 -106374772 + RSINE1 SINE B4 2 109 -56 3 991 288 0 0 0 chr3 53225014 53225046 -106374737 + (TG)n Simple_repeat Simple_repeat 1 32 0 3 991 555 227 90 72 chr3 53225168 53225334 -106374449 - B4 SINE B4 -116 176 8 3 991 369 0 0 0 chr3 53226150 53226191 -106373592 + (TG)n Simple_repeat Simple_repeat 2 42 0 3 991 314 256 90 42 chr3 53226546 53226626 -106373157 - Lx6 LINE L1 0 7460 7372 3 991 209 33 0 32 chr3 53226626 53226657 -106373126 + (CACCC)n Simple_repeat Simple_repeat 3 32 0 3 991 314 256 90 42 chr3 53226657 53226743 -106373040 - Lx6 LINE L1 -89 7371 7287 3 991 792 295 24 48 chr3 53226795 53227090 -106372693 + MTD LTR MaLR 2 289 -130 3 991 503 273 18 89 chr3 53227121 53227290 -106372493 + MTD LTR MaLR 263 419 0 3 991 193 315 0 40 chr3 53227409 53227485 -106372298 - L2a LINE L2 -14 3412 3340 3 991 889 222 0 48 chr3 53227969 53228196 -106371587 + B3 SINE B2 1 216 0 3 991 243 306 50 20 chr3 53228768 53228868 -106370915 + MIRb SINE MIR 126 228 -40 3 991 338 167 0 0 chr3 53229095 53229149 -106370634 - B3A SINE B2 -143 55 2 3 991 591 268 21 28 chr3 53229169 53229311 -106370472 - B3 SINE B2 -75 141 1 3 991 311 244 43 43 chr3 53230668 53230762 -106369021 - L1M2 LINE L1 -1635 4508 4415 3 991 38798 42 3 9 chr3 53230771 53236971 -106362812 - L1Md_F2 LINE L1 -2 6580 422 3 991 239 310 128 45 chr3 53237867 53238046 -106361737 - ORR1E LTR MaLR -165 194 1 3 991 1091 230 9 0 chr3 53238632 53238845 -106360938 - B3 SINE B2 -1 215 1 3 991 247 261 57 0 chr3 53239477 53239565 -106360218 + L1MB2 LINE L1 5804 5896 -275 3 991 224 180 40 0 chr3 53239577 53239627 -106360156 + GA-rich Low_complexity Low_complexity 1 52 0 3 991 469 88 25 0 chr3 53239702 53239782 -106360001 + (GA)n Simple_repeat Simple_repeat 1 82 0 3 991 415 258 156 6 chr3 53239799 53239978 -106359805 + L1MB2 LINE L1 5966 6171 0 3 991 631 90 10 10 chr3 53240026 53240127 -106359656 + (TC)n Simple_repeat Simple_repeat 2 102 0 3 991 225 108 0 0 chr3 53240132 53240169 -106359614 + (TCTG)n Simple_repeat Simple_repeat 2 38 0 3 991 180 265 27 68 chr3 53240339 53240412 -106359371 + L4 LINE RTE 837 906 -1123 3 991 2040 162 53 19 chr3 53240414 53240791 -106358992 - MTC LTR MaLR 0 421 32 3 991 321 256 12 49 chr3 53240796 53240878 -106358905 - MTC LTR MaLR -340 81 3 3 991 4481 170 106 107 chr3 53240884 53242143 -106357640 - MTC-int LTR MaLR 0 1258 1 3 991 1582 149 62 32 chr3 53242143 53242444 -106357339 - MTC LTR MaLR 0 421 84 3 991 323 319 21 0 chr3 53242540 53242634 -106357149 - PB1D10 SINE Alu -1 116 21 3 991 1346 279 47 16 chr3 53242848 53243274 -106356509 + MER54B LTR ERVL 340 778 -15 3 991 449 346 119 0 chr3 53243349 53243534 -106356249 - MER3 DNA MER1_type 0 209 3 3 991 612 268 65 0 chr3 53243567 53243720 -106356063 - MTEa LTR MaLR -216 163 1 3 991 1252 80 91 0 chr3 53243849 53243865 -106355918 - B2_Mm1t SINE B2 -1 192 177 3 991 315 0 0 0 chr3 53243865 53243900 -106355883 + (TTTA)n Simple_repeat Simple_repeat 3 37 0 3 991 1252 80 91 0 chr3 53243900 53244059 -106355724 - B2_Mm1t SINE B2 -17 176 2 3 991 204 125 0 0 chr3 53244646 53244678 -106355105 + (T)n Simple_repeat Simple_repeat 1 32 0 3 991 1137 85 0 0 chr3 53244692 53244833 -106354950 - B1_Mus1 SINE Alu -7 141 1 3 991 299 231 56 28 chr3 53245046 53245153 -106354630 - PB1D10 SINE Alu -34 115 6 3 991 500 230 8 90 chr3 53245827 53245961 -106353822 + MTC-int LTR MaLR 230 352 -906 3 991 3031 123 73 19 chr3 53245977 53246500 -106353283 + Lx3B LINE L1 6422 6972 -1 3 991 237 33 0 0 chr3 53246887 53246917 -106352866 + (CA)n Simple_repeat Simple_repeat 1 30 0 3 991 852 63 0 0 chr3 53247126 53247237 -106352546 + (GGGAGA)n Simple_repeat Simple_repeat 4 114 0 3 991 5373 191 50 9 chr3 53247245 53248453 -106351330 + Lx7 LINE L1 5465 6740 -956 3 991 1616 98 260 0 chr3 53248457 53248742 -106351041 + ORR1B2 LTR MaLR 1 359 -8 3 991 1542 131 31 0 chr3 53248773 53249002 -106350781 + Lx7 LINE L1 6763 6998 -698 3 991 1191 214 40 61 chr3 53249001 53249330 -106350453 + Lx7 LINE L1 7373 7694 -2 3 991 685 281 25 51 chr3 53249924 53250236 -106349547 + L1M2 LINE L1 5476 5787 -504 3 991 980 203 171 11 chr3 53250236 53250500 -106349283 + ORR1D1 LTR MaLR 16 321 -53 3 991 203 146 24 0 chr3 53250518 53250559 -106349224 + G-rich Low_complexity Low_complexity 4 45 0 3 991 2552 198 60 76 chr3 53250589 53251331 -106348452 + MTC-int LTR MaLR 387 1258 0 3 991 1128 151 85 24 chr3 53251338 53251549 -106348234 + MTC LTR MaLR 8 231 -190 3 991 1131 147 5 10 chr3 53251656 53251848 -106347935 + B2_Mm2 SINE B2 1 191 -4 3 991 291 215 76 93 chr3 53253011 53253129 -106346654 + B3A SINE B2 97 212 -4 3 991 242 340 37 9 chr3 53253140 53253247 -106346536 + B4A SINE B4 10 119 -173 3 991 214 209 40 131 chr3 53253232 53253331 -106346452 - B1_Mur4 SINE Alu -23 127 38 3 991 271 250 74 74 chr3 53253361 53253482 -106346301 - B1F2 SINE Alu -26 123 3 3 991 1486 284 74 4 chr3 53253731 53254216 -106345567 + Lx8 LINE L1 6429 6947 -526 3 991 315 227 66 33 chr3 53254299 53254390 -106345393 + Lx8 LINE L1 7126 7219 -254 3 991 241 282 38 13 chr3 53258647 53258726 -106341057 + ID4_ SINE ID 1 81 -2 3 991 245 183 27 40 chr3 53259359 53259433 -106340350 + (TG)n Simple_repeat Simple_repeat 2 74 0 3 991 1230 48 0 0 chr3 53259448 53259594 -106340189 - B1_Mus2 SINE Alu 0 147 2 3 991 225 0 0 0 chr3 53260559 53260584 -106339199 + (TCTG)n Simple_repeat Simple_repeat 2 26 0 3 991 330 264 117 58 chr3 53260721 53260858 -106338925 - B1F1 SINE Alu -1 148 4 3 991 348 264 50 94 chr3 53260979 53261138 -106338645 + MLT1C LTR MaLR 282 433 -34 3 991 1615 226 118 6 chr3 53261805 53262278 -106337505 + RLTR11A2 LTR ERVK 2 527 0 3 991 818 112 65 29 chr3 53262895 53263033 -106336750 + B1_Mur4 SINE Alu 2 144 -6 3 991 406 221 140 39 chr3 53263873 53263914 -106335869 - B3A SINE B2 -1 197 142 4 991 324 0 0 0 chr3 53263914 53263950 -106335833 + (TG)n Simple_repeat Simple_repeat 2 37 0 4 991 406 221 140 39 chr3 53263950 53264087 -106335696 - B3A SINE B2 -57 141 1 4 991 632 289 22 129 chr3 53265024 53265332 -106334451 + B4 SINE B4 2 280 -12 4 991 25 0 0 0 chr3 53266040 53266065 -106333718 + AT_rich Low_complexity Low_complexity 1 25 0 4 991 268 284 27 13 chr3 53266076 53266151 -106333632 + RSINE1 SINE B4 11 86 -79 4 991 222 248 193 33 chr3 53266151 53266220 -106333563 + B2_Mm2 SINE B2 16 177 -18 4 991 315 0 0 0 chr3 53266527 53266562 -106333221 + (TG)n Simple_repeat Simple_repeat 1 35 0 4 991 387 0 0 0 chr3 53266596 53266639 -106333144 + (TG)n Simple_repeat Simple_repeat 1 43 0 4 991 797 218 89 30 chr3 53266647 53266850 -106332933 - B3 SINE B2 -1 215 1 4 991 21 0 0 0 chr3 53267691 53267712 -106332071 + GC_rich Low_complexity Low_complexity 1 21 0 4 991 261 0 0 0 chr3 53268668 53268697 -106331086 + (A)n Simple_repeat Simple_repeat 1 29 0 4 991 210 37 0 0 chr3 53268877 53268904 -106330879 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 4 991 1135 55 7 0 chr3 53268904 53269041 -106330742 - B1_Mm SINE Alu -7 140 3 4 991 234 0 0 0 chr3 53270213 53270239 -106329544 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 4 991 1117 49 0 77 chr3 53270239 53270395 -106329388 - B1_Mus1 SINE Alu -3 145 2 4 991 223 198 21 0 chr3 53270693 53270746 -106329037 + B1F SINE Alu 62 144 -5 4 991 537 222 68 0 chr3 53271357 53271461 -106328322 + B3A SINE B2 2 113 -85 4 991 2296 194 89 116 chr3 53271461 53272090 -106327693 + RLTR25B LTR ERVK 1 612 -416 4 991 377 155 14 40 chr3 53272072 53272146 -106327637 + RLTR25B LTR ERVK 1032 1103 0 4 991 296 208 25 25 chr3 53273025 53273104 -106326679 - RSINE1 SINE B4 -79 86 8 4 991 231 355 11 0 chr3 53273150 53273243 -106326540 + MER3 DNA MER1_type 36 129 -80 4 991 1010 92 58 19 chr3 53274469 53274624 -106325159 + B2_Mm2 SINE B2 1 161 -34 4 991 243 0 0 0 chr3 53274624 53274651 -106325132 + (TTAA)n Simple_repeat Simple_repeat 2 28 0 4 991 225 275 100 0 chr3 53276397 53276477 -106323306 - MLT1F LTR MaLR -3 545 458 4 991 195 42 0 0 chr3 53276479 53276503 -106323280 + (TTGG)n Simple_repeat Simple_repeat 4 27 0 4 991 442 236 47 9 chr3 53276508 53276615 -106323168 - PB1D9 SINE Alu -1 119 9 4 991 609 295 242 8 chr3 53276624 53276996 -106322787 - MLT1F LTR MaLR -82 466 8 4 991 360 0 0 0 chr3 53277144 53277184 -106322599 + (TG)n Simple_repeat Simple_repeat 2 41 0 4 991 516 16 0 0 chr3 53280293 53280354 -106319429 + (TA)n Simple_repeat Simple_repeat 2 62 0 4 991 37 0 0 0 chr3 53280354 53280391 -106319392 + AT_rich Low_complexity Low_complexity 1 37 0 4 991 230 290 0 55 chr3 53280580 53280662 -106319121 + MIRc SINE MIR 79 156 -52 4 991 180 0 0 0 chr3 53283827 53283847 -106315936 + (A)n Simple_repeat Simple_repeat 1 20 0 4 991 763 139 23 15 chr3 53283849 53283980 -106315803 + B1_Mus2 SINE Alu 1 132 -15 4 991 1193 34 7 13 chr3 53283983 53284132 -106315651 + B1_Mus1 SINE Alu 1 148 0 4 991 1302 111 5 0 chr3 53285943 53286132 -106313651 - B2_Mm1a SINE B2 -2 191 2 4 991 2196 112 12 18 chr3 53286585 53286913 -106312870 + ORR1A3 LTR MaLR 1 326 0 4 991 524 72 0 0 chr3 53287169 53287238 -106312545 + B1_Mus2 SINE Alu 79 147 0 4 991 929 219 101 40 chr3 53287444 53287768 -106312015 - RLTR15 LTR ERVK -73 286 9 4 991 330 316 20 0 chr3 53287768 53287866 -106311917 + B3A SINE B2 1 100 -98 4 991 323 171 13 0 chr3 53287866 53287942 -106311841 + CT-rich Low_complexity Low_complexity 1 77 0 4 991 1022 92 35 0 chr3 53288008 53288150 -106311633 - B1_Mus2 SINE Alu 0 147 1 4 991 1525 53 16 0 chr3 53288154 53288342 -106311441 - B2_Mm2 SINE B2 -3 192 2 4 991 952 202 20 29 chr3 53288539 53288743 -106311040 - B3 SINE B2 -13 203 2 4 991 249 305 135 15 chr3 53290203 53290336 -106309447 - B1F2 SINE Alu 0 149 1 4 991 1018 233 180 20 chr3 53291185 53291535 -106308248 - MTD LTR MaLR 0 419 14 4 991 207 100 0 0 chr3 53291535 53291565 -106308218 + (TAAA)n Simple_repeat Simple_repeat 1 30 0 4 991 345 363 42 47 chr3 53291730 53291921 -106307862 - MER58A DNA MER1_type -7 217 28 4 991 254 257 78 39 chr3 53292065 53292142 -106307641 + PB1D7 SINE Alu 39 118 -2 4 991 447 221 10 31 chr3 53292875 53292973 -106306810 + PB1D10 SINE Alu 17 112 -5 4 991 300 240 94 24 chr3 53293639 53293725 -106306058 - PB1D10 SINE Alu -29 88 4 4 991 265 192 39 0 chr3 53293769 53293820 -106305963 - RMER5 LTR ERV1 0 534 482 4 991 5499 120 150 7 chr3 53293820 53294785 -106304998 + RLTR25A LTR ERVK 1 1103 0 4 991 355 333 35 79 chr3 53294978 53295180 -106304603 - RMER5 LTR ERV1 -308 226 34 4 991 228 289 135 67 chr3 53295172 53295276 -106304507 - B1F1 SINE Alu -26 123 13 4 991 22 35 0 0 chr3 53295683 53295712 -106304071 + AT_rich Low_complexity Low_complexity 1 29 0 4 991 651 194 266 17 chr3 53295748 53295921 -106303862 + B3 SINE B2 1 216 0 4 991 560 235 224 0 chr3 53296163 53296333 -106303450 + ID_B1 SINE B4 3 210 -14 4 991 304 250 53 21 chr3 53297162 53297256 -106302527 - PB1D10 SINE Alu -3 114 18 4 991 220 350 59 10 chr3 53297180 53297281 -106302502 - ID_B1 SINE B4 -45 179 74 4 991 347 225 26 0 chr3 53297294 53297318 -106302465 + polypyrimidine Low_complexity Low_complexity 133 156 0 4 991 1389 61 0 0 chr3 53297318 53297498 -106302285 + (TTCTCC)n Simple_repeat Simple_repeat 1 180 0 4 991 347 225 26 0 chr3 53297498 53297624 -106302159 + CT-rich Low_complexity Low_complexity 3 132 0 4 991 225 302 0 0 chr3 53297635 53297688 -106302095 + polypyrimidine Low_complexity Low_complexity 2 54 0 4 991 411 73 0 0 chr3 53297694 53297749 -106302034 + (TCTA)n Simple_repeat Simple_repeat 2 56 0 4 991 909 278 30 67 chr3 53297760 53298057 -106301726 + B4A SINE B4 1 286 -6 4 991 1356 24 15 0 chr3 53298069 53298275 -106301508 + (CA)n Simple_repeat Simple_repeat 1 209 0 4 991 376 333 66 6 chr3 53298685 53298851 -106300932 + MER89 LTR ERV1 1 176 -383 4 991 616 266 93 0 chr3 53299132 53299271 -106300512 - RSINE1 SINE B4 -12 153 2 4 991 743 223 7 0 chr3 53299460 53299608 -106300175 + B1_Mur2 SINE Alu 1 149 0 4 991 311 65 0 21 chr3 53299608 53299655 -106300128 + (GGAA)n Simple_repeat Simple_repeat 2 47 0 4 991 231 36 0 0 chr3 53299653 53299681 -106300102 + (GA)n Simple_repeat Simple_repeat 1 28 0 4 991 334 308 82 8 chr3 53299681 53299815 -106299968 + L1MEg LINE L1 1839 1982 -4102 4 991 285 119 23 45 chr3 53300556 53300644 -106299139 + (CAGAGA)n Simple_repeat Simple_repeat 2 87 0 4 991 266 286 0 10 chr3 53300647 53300746 -106299037 + (CA)n Simple_repeat Simple_repeat 1 98 0 4 991 369 284 99 75 chr3 53300746 53300772 -106299011 + B4A SINE B4 73 141 -151 4 991 916 111 52 0 chr3 53300772 53300907 -106298876 + B1_Mm SINE Alu 6 147 0 4 991 369 284 99 75 chr3 53300907 53300959 -106298824 + B4A SINE B4 142 290 -2 4 991 368 208 0 0 chr3 53300963 53301035 -106298748 + (CA)n Simple_repeat Simple_repeat 1 72 0 4 991 476 237 0 6 chr3 53301036 53301210 -106298573 + (CATA)n Simple_repeat Simple_repeat 2 174 0 4 991 234 250 51 38 chr3 53301258 53301337 -106298446 - MIRb SINE MIR -73 195 116 4 991 1194 85 0 0 chr3 53302834 53303108 -106296675 + (CA)n Simple_repeat Simple_repeat 1 274 0 4 991 642 121 0 10 chr3 53303303 53303403 -106296380 + BC1_Mm scRNA scRNA 1 99 -53 4 991 1244 34 0 14 chr3 53303530 53303678 -106296105 - B1_Mus2 SINE Alu -1 146 1 4 991 284 290 26 70 chr3 53304120 53304235 -106295548 - ID_B1 SINE B4 0 224 115 4 991 23 0 0 0 chr3 53304418 53304441 -106295342 + AT_rich Low_complexity Low_complexity 1 23 0 4 991 400 316 0 11 chr3 53305494 53305673 -106294110 + (CAGAGA)n Simple_repeat Simple_repeat 1 177 0 4 991 258 261 0 0 chr3 53305680 53305856 -106293927 + (CA)n Simple_repeat Simple_repeat 1 176 0 4 991 234 254 0 0 chr3 53305898 53306040 -106293743 + (CA)n Simple_repeat Simple_repeat 1 142 0 4 991 335 0 0 186 chr3 53306062 53306283 -106293500 + (CACAG)n Simple_repeat Simple_repeat 1 180 0 4 991 285 401 0 0 chr3 53306254 53306431 -106293352 + (CACG)n Simple_repeat Simple_repeat 3 179 0 4 991 1124 147 127 0 chr3 53306680 53306877 -106292906 + URR1A DNA MER1_type 5 226 0 4 991 1127 199 38 0 chr3 53307467 53307653 -106292130 + B3 SINE B2 1 193 -23 4 991 207 162 0 0 chr3 53308028 53308065 -106291718 + T-rich Low_complexity Low_complexity 4 40 0 4 991 1196 28 35 0 chr3 53308065 53308207 -106291576 - B1_Mm SINE Alu 0 147 1 4 991 198 260 113 57 chr3 53308762 53308868 -106290915 - MIRb SINE MIR -130 138 27 4 991 972 240 9 22 chr3 53308986 53309208 -106290575 - ID_B1 SINE B4 -4 220 2 4 991 439 345 34 7 chr3 53310279 53310425 -106289358 + RSINE1 SINE B4 3 152 -13 4 991 516 32 0 0 chr3 53310426 53310488 -106289295 + (CA)n Simple_repeat Simple_repeat 2 63 0 4 991 340 77 0 30 chr3 53310488 53310555 -106289228 + (CCA)n Simple_repeat Simple_repeat 1 65 0 4 991 239 131 98 0 chr3 53310595 53310656 -106289127 + A-rich Low_complexity Low_complexity 1 67 0 4 991 995 212 21 43 chr3 53310923 53311143 -106288640 - MTD LTR MaLR -162 257 6 4 991 471 35 0 0 chr3 53311649 53311706 -106288077 + (CA)n Simple_repeat Simple_repeat 1 57 0 4 991 1206 162 21 10 chr3 53312452 53312598 -106287185 + RMER17C LTR ERVK 1 242 -168 4 991 1027 73 0 13 chr3 53312598 53312750 -106287033 + (TC)n Simple_repeat Simple_repeat 1 150 0 4 991 1206 159 13 21 chr3 53312750 53312919 -106286864 + RMER17C LTR ERVK 243 410 0 4 991 303 28 0 0 chr3 53312985 53313021 -106286762 + (TTTTA)n Simple_repeat Simple_repeat 2 37 0 4 991 241 183 131 16 chr3 53313029 53313090 -106286693 - B1_Mur1 SINE Alu -1 148 81 5 991 809 155 0 15 chr3 53313089 53313220 -106286563 + B1_Mur2 SINE Alu 21 149 0 5 991 240 122 0 0 chr3 53314052 53314093 -106285690 + (C)n Simple_repeat Simple_repeat 1 41 0 5 991 471 314 6 60 chr3 53314393 53314559 -106285224 - MTEa LTR MaLR -218 161 5 5 991 2737 174 45 12 chr3 53314559 53315065 -106284718 + RLTR20B3 LTR ERVK 1 523 -54 5 991 2198 218 100 25 chr3 53315997 53316567 -106283216 + RMER1B Other Other 438 1050 -16 5 991 400 206 35 78 chr3 53316698 53316814 -106282969 - PB1D9 SINE Alu -8 112 2 5 991 690 214 7 27 chr3 53316840 53316989 -106282794 - B1_Mur2 SINE Alu -3 146 1 5 991 361 287 29 11 chr3 53317389 53317507 -106282276 + B1F SINE Alu 5 124 -25 5 991 322 234 104 70 chr3 53321492 53321607 -106278176 - B1_Mur1 SINE Alu -1 148 30 5 991 324 0 0 0 chr3 53321643 53321679 -106278104 + (CA)n Simple_repeat Simple_repeat 2 37 0 5 991 1042 283 27 0 chr3 53321872 53322130 -106277653 + B4 SINE B4 9 273 -19 5 991 1289 27 0 0 chr3 53322273 53322420 -106277363 + B1_Mm SINE Alu 1 147 0 5 991 225 0 0 0 chr3 53322420 53322445 -106277338 + (A)n Simple_repeat Simple_repeat 1 25 0 5 991 766 120 17 8 chr3 53322815 53322933 -106276850 + PB1D9 SINE Alu 2 120 0 5 991 972 17 8 0 chr3 53322958 53323075 -106276708 - B1_Mus1 SINE Alu 0 148 31 5 991 743 221 109 10 chr3 53323095 53323287 -106276496 - B3 SINE B2 -3 213 3 5 991 871 139 96 12 chr3 53325710 53325877 -106273906 - B2_Mm2 SINE B2 -14 181 1 5 991 387 0 0 0 chr3 53327779 53327822 -106271961 + (TAA)n Simple_repeat Simple_repeat 2 44 0 5 991 961 50 17 0 chr3 53327822 53327942 -106271841 + B1_Mus1 SINE Alu 22 143 -5 5 991 279 0 0 0 chr3 53327945 53327976 -106271807 + (TAA)n Simple_repeat Simple_repeat 2 32 0 5 991 324 139 74 76 chr3 53328243 53328357 -106271426 + B1F SINE Alu 18 133 -16 5 991 490 269 9 0 chr3 53328737 53328845 -106270938 - PB1D7 SINE Alu -9 111 3 5 991 220 327 46 37 chr3 53328750 53328858 -106270925 - B4 SINE B4 -105 187 79 5 991 219 309 34 90 chr3 53329012 53329101 -106270682 - MIRc SINE MIR -134 134 51 5 991 1164 62 0 0 chr3 53329378 53329524 -106270259 - B1_Mus2 SINE Alu -1 146 1 5 991 377 238 19 19 chr3 53330083 53330190 -106269593 - L1MB8 LINE L1 -1 6177 6071 5 991 832 236 44 20 chr3 53330784 53330987 -106268796 - B3 SINE B2 -2 214 7 5 991 23 0 0 0 chr3 53331682 53331705 -106268078 + AT_rich Low_complexity Low_complexity 1 23 0 5 991 1682 21 0 5 chr3 53331784 53331977 -106267806 - B2_Mm1a SINE B2 0 193 2 5 991 356 223 243 0 chr3 53332122 53332225 -106267558 - B1F1 SINE Alu -21 128 1 5 991 759 22 0 0 chr3 53332237 53332326 -106267457 + (TTTC)n Simple_repeat Simple_repeat 4 92 0 5 991 863 174 16 53 chr3 53332326 53332514 -106267269 - B2_Mm2 SINE B2 -14 181 1 5 991 1181 75 0 0 chr3 53333325 53333472 -106266311 + B1_Mus2 SINE Alu 1 147 0 5 991 237 65 0 0 chr3 53333873 53333904 -106265879 + (T)n Simple_repeat Simple_repeat 1 31 0 5 991 244 365 28 22 chr3 53336193 53336375 -106263408 + MIR SINE MIR 80 262 0 5 991 422 298 33 0 chr3 53336440 53336561 -106263222 - ID_B1 SINE B4 -99 125 1 5 991 234 0 98 0 chr3 53337052 53337093 -106262690 + (CAAAA)n Simple_repeat Simple_repeat 2 46 0 5 991 978 216 52 0 chr3 53337127 53337321 -106262462 + B3 SINE B2 2 205 -11 5 991 252 119 51 0 chr3 53337321 53337380 -106262403 + (TAGA)n Simple_repeat Simple_repeat 1 62 0 5 991 427 140 8 116 chr3 53338440 53338561 -106261222 + Lx4B LINE L1 6951 7058 0 5 991 468 77 0 0 chr3 53340140 53340205 -106259578 + (TA)n Simple_repeat Simple_repeat 1 65 0 5 991 234 0 0 0 chr3 53340344 53340370 -106259413 + (TG)n Simple_repeat Simple_repeat 1 26 0 5 991 539 163 41 0 chr3 53340374 53340472 -106259311 - B3A SINE B2 -55 143 42 5 991 189 171 0 0 chr3 53342227 53342262 -106257521 + CT-rich Low_complexity Low_complexity 2 36 0 5 991 1167 82 0 0 chr3 53342264 53342411 -106257372 - B1_Mus1 SINE Alu -1 147 1 5 991 634 162 390 0 chr3 53342872 53343026 -106256757 + B3 SINE B2 2 215 -1 5 991 324 0 0 0 chr3 53343667 53343703 -106256080 + (GA)n Simple_repeat Simple_repeat 1 36 0 5 991 1174 62 14 0 chr3 53344039 53344184 -106255599 + B1_Mus1 SINE Alu 2 148 0 5 991 619 281 7 0 chr3 53344372 53344518 -106255265 + RSINE1 SINE B4 2 148 -17 5 991 868 192 12 0 chr3 53344703 53344864 -106254919 - B3 SINE B2 -51 165 3 5 991 450 79 0 0 chr3 53345201 53345264 -106254519 + (TG)n Simple_repeat Simple_repeat 1 63 0 5 991 340 288 187 16 chr3 53345264 53345451 -106254332 - B4A SINE B4 -22 270 52 5 991 210 37 0 0 chr3 53345758 53345785 -106253998 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 5 991 915 78 0 0 chr3 53345785 53345913 -106253870 - B1_Mus1 SINE Alu -11 137 10 5 992 378 0 0 0 chr3 53347996 53348038 -106251745 + (CA)n Simple_repeat Simple_repeat 2 43 0 5 992 269 294 54 0 chr3 53348425 53348517 -106251266 + LTR79 LTR ERVL 1 97 -430 5 992 273 287 17 77 chr3 53348698 53348748 -106251035 - ID_B1 SINE B4 -106 118 9 5 992 299 224 15 0 chr3 53348748 53348815 -106250968 - ID4_ SINE ID -7 76 9 5 992 612 290 100 35 chr3 53348842 53349103 -106250680 - B4A SINE B4 0 292 15 5 992 516 59 0 0 chr3 53349499 53349567 -106250216 + (GGGA)n Simple_repeat Simple_repeat 3 70 0 5 992 364 389 0 31 chr3 53350576 53350706 -106249077 + B3 SINE B2 55 180 -36 5 992 208 336 21 28 chr3 53351036 53351177 -106248606 - L3 LINE CR1 -849 3640 3501 5 992 347 299 28 50 chr3 53351311 53351452 -106248331 + RSINE1 SINE B4 11 148 -17 5 992 226 241 52 0 chr3 53352280 53352338 -106247445 + RMER15 LTR ERVL 3 63 -512 5 992 1457 186 166 5 chr3 53352383 53352793 -106246990 + RMER15 LTR ERVL 27 502 -73 5 992 308 290 152 78 chr3 53353149 53353418 -106246365 + MLT1B LTR MaLR 94 382 -8 5 992 277 274 40 14 chr3 53354325 53354399 -106245384 + ID4_ SINE ID 4 79 -4 5 992 339 25 0 0 chr3 53354431 53354471 -106245312 + (CA)n Simple_repeat Simple_repeat 1 40 0 5 992 715 117 26 18 chr3 53354561 53354674 -106245109 + B1_Mur2 SINE Alu 36 149 0 5 992 204 167 0 0 chr3 53354675 53354723 -106245060 + A-rich Low_complexity Low_complexity 1 48 0 5 992 301 276 0 121 chr3 53354737 53354836 -106244947 + B1_Mur2 SINE Alu 6 92 -57 5 992 294 50 0 0 chr3 53356475 53356515 -106243268 + (TG)n Simple_repeat Simple_repeat 2 41 0 5 992 369 0 0 0 chr3 53357383 53357424 -106242359 + (GA)n Simple_repeat Simple_repeat 2 42 0 5 992 1282 155 5 19 chr3 53358055 53358265 -106241518 - B3 SINE B2 -9 207 1 5 992 1771 179 37 29 chr3 53358418 53358759 -106241024 + ORR1C1 LTR MaLR 1 347 -31 5 992 2141 148 101 0 chr3 53358759 53359117 -106240666 - ORR1B1 LTR MaLR 0 394 1 5 992 1771 179 37 29 chr3 53359117 53359149 -106240634 + ORR1C1 LTR MaLR 348 377 -1 5 992 804 126 0 0 chr3 53359872 53360023 -106239760 + (TCTA)n Simple_repeat Simple_repeat 2 152 0 5 992 1179 229 119 16 chr3 53360303 53360681 -106239102 - MTD LTR MaLR 0 419 3 5 992 815 289 130 13 chr3 53360776 53361091 -106238692 - ORR1E LTR MaLR -6 353 2 5 992 200 333 38 25 chr3 53362527 53362607 -106237176 - MIRb SINE MIR -86 182 102 5 992 1047 220 0 0 chr3 53364576 53364785 -106234998 + B3 SINE B2 7 215 -1 5 992 198 143 0 0 chr3 53364918 53364953 -106234830 + (A)n Simple_repeat Simple_repeat 1 35 0 5 992 289 279 46 11 chr3 53366282 53366369 -106233414 + B3 SINE B2 34 123 -93 5 992 429 20 0 0 chr3 53366371 53366421 -106233362 + (CA)n Simple_repeat Simple_repeat 1 50 0 5 992 794 236 0 11 chr3 53366887 53367071 -106232712 + MTD LTR MaLR 55 236 -183 5 992 323 256 179 0 chr3 53367181 53367298 -106232485 - B3 SINE B2 -78 138 1 5 992 355 188 88 0 chr3 53367323 53367403 -106232380 + B3 SINE B2 67 153 -63 5 992 450 0 0 0 chr3 53367410 53367460 -106232323 + (CA)n Simple_repeat Simple_repeat 1 50 0 5 992 245 296 28 0 chr3 53368376 53368447 -106231336 - ID4_ SINE ID -2 81 9 5 992 561 105 0 0 chr3 53369109 53369195 -106230588 + (TCC)n Simple_repeat Simple_repeat 2 87 0 5 992 24 32 0 0 chr3 53369860 53369891 -106229892 + AT_rich Low_complexity Low_complexity 1 31 0 5 992 982 175 73 20 chr3 53370253 53370457 -106229326 + B3 SINE B2 2 216 0 5 992 247 193 92 43 chr3 53371077 53371218 -106228565 - Lx9 LINE L1 -19 7625 7478 5 992 198 0 0 0 chr3 53371218 53371240 -106228543 + (CA)n Simple_repeat Simple_repeat 1 22 0 5 992 574 239 24 57 chr3 53371240 53371449 -106228334 - Lx9 LINE L1 -127 7517 7316 5 992 3716 64 13 6 chr3 53374061 53374533 -106225250 + MT2C_Mm LTR ERVL 1 475 0 5 992 26 30 0 0 chr3 53375179 53375212 -106224571 + AT_rich Low_complexity Low_complexity 1 33 0 5 992 182 37 0 36 chr3 53375707 53375735 -106224048 + (CCCCCA)n Simple_repeat Simple_repeat 1 27 0 5 992 564 15 0 0 chr3 53376491 53376556 -106223227 + (TC)n Simple_repeat Simple_repeat 2 66 0 5 992 842 64 96 0 chr3 53376559 53376684 -106223099 - B1_Mus1 SINE Alu -5 143 7 5 992 192 77 0 0 chr3 53378680 53378706 -106221077 + (T)n Simple_repeat Simple_repeat 1 26 0 6 992 648 273 16 37 chr3 53379580 53379770 -106220013 + B3A SINE B2 9 194 -4 6 992 199 310 124 17 chr3 53380315 53380492 -106219291 - L2c LINE L2 -259 3128 2933 6 992 1728 184 78 16 chr3 53380688 53381075 -106218708 - MTD LTR MaLR -8 411 1 6 992 591 248 182 14 chr3 53381116 53381438 -106218345 - MER89 LTR ERV1 -85 474 2 6 992 286 236 0 0 chr3 53382020 53382092 -106217691 - L2c LINE L2 -1310 2109 2038 6 992 376 267 10 80 chr3 53382815 53382972 -106216811 + MLT1A0 LTR MaLR 253 408 0 6 992 351 349 45 22 chr3 53383555 53383778 -106216005 - MIR SINE MIR -25 237 10 6 992 1544 121 9 0 chr3 53383963 53384187 -106215596 + URR1A DNA MER1_type 1 226 0 6 992 948 232 5 0 chr3 53385281 53385475 -106214308 - B3 SINE B2 -17 199 5 6 992 52 50 0 0 chr3 53385779 53385859 -106213924 + AT_rich Low_complexity Low_complexity 1 80 0 6 992 487 202 134 24 chr3 53386021 53386148 -106213635 + B3 SINE B2 11 151 -65 6 992 459 0 0 0 chr3 53386150 53386201 -106213582 + (TG)n Simple_repeat Simple_repeat 2 52 0 6 992 245 262 73 24 chr3 53386335 53386417 -106213366 + L2b LINE L2 3276 3361 -14 6 992 254 243 151 27 chr3 53390975 53391163 -106208620 + L1MA8 LINE L1 5722 5936 -355 6 992 441 36 0 0 chr3 53391164 53391219 -106208564 + (TG)n Simple_repeat Simple_repeat 1 55 0 6 992 354 235 59 0 chr3 53392616 53392718 -106207065 - PB1D9 SINE Alu -6 114 7 6 992 27 0 0 0 chr3 53392729 53392756 -106207027 + AT_rich Low_complexity Low_complexity 1 27 0 6 992 21 0 0 0 chr3 53394145 53394166 -106205617 + AT_rich Low_complexity Low_complexity 1 21 0 6 992 287 321 0 47 chr3 53395457 53395542 -106204241 - PB1D10 SINE Alu -8 109 29 6 992 258 204 0 0 chr3 53395627 53395676 -106204107 - B3 SINE B2 -103 113 65 6 992 796 37 9 9 chr3 53396467 53396576 -106203207 + (TA)n Simple_repeat Simple_repeat 2 110 0 6 992 260 53 26 0 chr3 53396787 53396825 -106202958 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 6 992 635 175 83 0 chr3 53397112 53397232 -106202551 + B3 SINE B2 1 130 -86 6 992 933 79 0 0 chr3 53399038 53399165 -106200618 + (TTCC)n Simple_repeat Simple_repeat 2 128 0 6 992 366 88 29 14 chr3 53399165 53399234 -106200549 + (TCC)n Simple_repeat Simple_repeat 3 72 0 6 992 1088 103 0 0 chr3 53399251 53399397 -106200386 - B1_Mus1 SINE Alu -1 147 2 6 992 324 0 0 0 chr3 53399657 53399693 -106200090 + (CA)n Simple_repeat Simple_repeat 1 36 0 6 992 241 294 46 23 chr3 53400287 53400374 -106199409 - MER82 DNA MER2_type -23 630 542 6 992 688 310 132 32 chr3 53400409 53400563 -106199220 - MER82 DNA MER2_type -176 477 307 6 992 2036 101 28 81 chr3 53400563 53400994 -106198789 + RMER17C LTR ERVK 1 408 -2 6 992 688 310 132 32 chr3 53400994 53401272 -106198511 - MER82 DNA MER2_type -347 306 2 6 992 726 194 11 11 chr3 53401975 53402152 -106197631 + GA-rich Low_complexity Low_complexity 4 180 0 6 992 300 111 0 0 chr3 53403221 53403266 -106196517 + (GAAAA)n Simple_repeat Simple_repeat 1 45 0 6 992 180 77 0 0 chr3 53403887 53403913 -106195870 + (TGGGGG)n Simple_repeat Simple_repeat 3 28 0 6 992 218 258 30 15 chr3 53404538 53404605 -106195178 + GA-rich Low_complexity Low_complexity 1 68 0 6 992 449 312 83 123 chr3 53405521 53405697 -106194086 - B4A SINE B4 -4 288 130 6 992 225 0 0 0 chr3 53405704 53405729 -106194054 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 6 992 1102 84 0 20 chr3 53405729 53405867 -106193916 - B1_Mus2 SINE Alu -9 138 1 6 992 449 312 83 123 chr3 53405867 53405990 -106193793 - B4A SINE B4 -163 129 1 6 992 576 262 79 0 chr3 53406169 53406333 -106193450 + B3A SINE B2 5 181 -17 6 992 22 35 0 0 chr3 53406349 53406378 -106193405 + AT_rich Low_complexity Low_complexity 1 29 0 6 992 432 238 0 0 chr3 53406935 53407061 -106192722 + (CA)n Simple_repeat Simple_repeat 2 127 0 6 992 763 191 123 21 chr3 53407076 53407263 -106192520 + B3 SINE B2 11 216 0 6 992 480 18 0 0 chr3 53407364 53407421 -106192362 + (TG)n Simple_repeat Simple_repeat 2 58 0 6 992 832 228 95 10 chr3 53407782 53408066 -106191717 + MTE2b LTR MaLR 1 378 -1 6 992 27 29 0 0 chr3 53409009 53409043 -106190740 + AT_rich Low_complexity Low_complexity 1 34 0 6 992 367 161 103 21 chr3 53409255 53409357 -106190426 - MTEb LTR MaLR -18 361 226 6 992 589 269 0 43 chr3 53409383 53409523 -106190260 + B3A SINE B2 50 183 -15 6 992 2490 181 2 2 chr3 53409582 53410003 -106189780 - MTC LTR MaLR 0 421 1 6 992 10307 71 17 9 chr3 53411375 53413442 -106186341 + L1VL4 LINE L1 206 2291 -1268 6 992 66 43 0 0 chr3 53413443 53413537 -106186246 + AT_rich Low_complexity Low_complexity 1 94 0 6 992 32 57 0 0 chr3 53413684 53413737 -106186046 + AT_rich Low_complexity Low_complexity 1 53 0 6 992 398 43 0 55 chr3 53414082 53414155 -106185628 + (AGGGGG)n Simple_repeat Simple_repeat 6 74 0 6 992 216 222 48 0 chr3 53414534 53414597 -106185186 + CT-rich Low_complexity Low_complexity 4 69 0 6 992 788 177 43 0 chr3 53416202 53416343 -106183440 + B1_Mur4 SINE Alu 1 147 -3 6 992 524 253 88 73 chr3 53416467 53416740 -106183043 + B4A SINE B4 1 277 -15 6 992 340 283 124 143 chr3 53417088 53417249 -106182534 - RSINE1 SINE B4 0 165 8 6 992 647 107 28 14 chr3 53417354 53417496 -106182287 + (TCTA)n Simple_repeat Simple_repeat 3 146 0 6 992 3449 33 5 0 chr3 53417636 53418030 -106181753 - MTA_Mm LTR MaLR 0 396 1 6 992 245 242 0 43 chr3 53418334 53418403 -106181380 + (TG)n Simple_repeat Simple_repeat 1 66 0 6 992 1007 259 62 7 chr3 53418408 53418680 -106181103 - B4A SINE B4 -3 289 3 6 992 447 19 0 0 chr3 53420192 53420244 -106179539 + (TC)n Simple_repeat Simple_repeat 2 53 0 6 992 366 291 67 85 chr3 53420887 53421052 -106178731 - B4 SINE B4 -111 181 20 6 992 327 247 55 0 chr3 53422188 53422261 -106177522 - RSINE1 SINE B4 0 165 89 6 992 327 258 0 63 chr3 53422325 53422420 -106177363 - RSINE1 SINE B4 -66 99 11 6 992 3676 84 2 6 chr3 53422905 53423382 -106176401 - MT2C_Mm LTR ERVL 0 475 1 6 992 2418 64 39 0 chr3 53423382 53423694 -106176089 - ORR1A2 LTR MaLR -3 324 1 6 992 1221 162 45 0 chr3 53423782 53423980 -106175803 - B3 SINE B2 -9 207 1 6 992 321 131 0 0 chr3 53424026 53424087 -106175696 + (CA)n Simple_repeat Simple_repeat 2 62 0 6 992 278 333 40 10 chr3 53425300 53425400 -106174383 + MER74A LTR ERVL 21 123 -435 6 992 429 309 117 6 chr3 53425408 53425640 -106174143 + MER74A LTR ERVL 215 501 -121 6 992 774 239 38 43 chr3 53425678 53425888 -106173895 - B3 SINE B2 -6 210 2 6 992 377 288 20 54 chr3 53426192 53426269 -106173514 - MTE-int LTR MaLR -54 1526 1456 6 992 4610 161 47 38 chr3 53426269 53427169 -106172614 - RMER13B LTR ERVK 0 908 1 6 992 377 288 20 54 chr3 53427169 53427238 -106172545 - MTE-int LTR MaLR -125 1455 1385 6 992 511 235 10 0 chr3 53427620 53427722 -106172061 + PB1D10 SINE Alu 1 103 -14 6 992 207 114 0 0 chr3 53427722 53427757 -106172026 + (TCTG)n Simple_repeat Simple_repeat 2 36 0 6 992 498 125 0 0 chr3 53427757 53427837 -106171946 + (CATA)n Simple_repeat Simple_repeat 3 82 0 6 992 334 344 8 102 chr3 53428989 53429225 -106170558 + MLT1D LTR MaLR 3 216 -289 6 992 380 282 22 56 chr3 53429476 53429656 -106170127 - L1M3 LINE L1 -1425 4715 4542 6 992 632 282 38 14 chr3 53429670 53429879 -106169904 - B3 SINE B2 0 216 3 6 992 301 308 192 0 chr3 53429901 53430047 -106169736 + MLT1D LTR MaLR 330 503 -2 6 992 197 284 13 26 chr3 53430166 53430242 -106169541 + MIRb SINE MIR 91 165 -103 6 992 421 151 0 23 chr3 53430451 53430539 -106169244 + CT-rich Low_complexity Low_complexity 3 88 0 6 992 320 248 212 0 chr3 53430541 53430654 -106169129 - ID_B1 SINE B4 -2 222 86 6 992 581 259 36 24 chr3 53431173 53431339 -106168444 + B4A SINE B4 1 168 -124 6 992 468 0 0 0 chr3 53431397 53431449 -106168334 + (TG)n Simple_repeat Simple_repeat 1 52 0 6 992 284 0 0 27 chr3 53431524 53431561 -106168222 + (CA)n Simple_repeat Simple_repeat 2 37 0 6 992 545 165 68 0 chr3 53433071 53433174 -106166609 + B3 SINE B2 1 110 -106 6 992 1450 43 26 16 chr3 53433228 53433419 -106166364 + B2_Mm1t SINE B2 1 193 0 6 992 290 228 53 34 chr3 53434292 53434434 -106165349 + B3 SINE B2 7 212 -4 6 992 414 121 0 0 chr3 53435707 53435773 -106164010 + (CAT)n Simple_repeat Simple_repeat 3 68 0 6 992 363 182 339 18 chr3 53435924 53436036 -106163747 + B1_Mur4 SINE Alu 2 149 -1 6 992 344 138 15 0 chr3 53436720 53436785 -106162998 + (TG)n Simple_repeat Simple_repeat 2 67 0 6 992 317 186 101 20 chr3 53437369 53437468 -106162315 + PB1D10 SINE Alu 11 117 0 6 992 206 302 0 0 chr3 53437479 53437532 -106162251 + GA-rich Low_complexity Low_complexity 3 55 0 6 992 640 262 14 0 chr3 53438069 53438210 -106161573 - B1_Mur2 SINE Alu -5 144 2 6 992 351 0 0 0 chr3 53438439 53438478 -106161305 + (TCTG)n Simple_repeat Simple_repeat 2 40 0 6 992 231 180 16 16 chr3 53438724 53438786 -106160997 + (TA)n Simple_repeat Simple_repeat 2 63 0 6 992 210 295 0 0 chr3 53440351 53440412 -106159371 + ID4 SINE ID 7 67 -16 6 992 378 0 0 0 chr3 53441892 53441934 -106157849 + (TG)n Simple_repeat Simple_repeat 2 43 0 6 992 486 0 0 0 chr3 53442018 53442072 -106157711 + (TC)n Simple_repeat Simple_repeat 1 54 0 6 992 10924 147 28 34 chr3 53442104 53443012 -106156771 + L1VL2 LINE L1 61 973 -5362 6 992 1490 50 33 0 chr3 53443012 53443193 -106156590 + B2_Mm1t SINE B2 1 187 -6 6 992 20497 170 63 36 chr3 53443193 53447386 -106152397 + L1_Mur2 LINE L1 1271 5581 -296 6 992 7688 72 9 2 chr3 53447386 53448374 -106151409 + L1Md_F2 LINE L1 5588 6582 0 6 992 4894 92 7 1 chr3 53448366 53449044 -106150739 + L1_Mus3 LINE L1 5956 6637 -1 6 992 1156 119 68 0 chr3 53450261 53450437 -106149346 + B2_Mm2 SINE B2 2 189 -6 7 992 414 0 0 0 chr3 53450469 53450515 -106149268 + (TG)n Simple_repeat Simple_repeat 1 46 0 7 992 994 199 10 20 chr3 53450516 53450711 -106149072 - B3 SINE B2 -20 196 4 7 992 1971 63 8 0 chr3 53452578 53452830 -106146953 + L1_Mus1 LINE L1 6314 6567 0 7 992 717 227 91 20 chr3 53452931 53453129 -106146654 - B3 SINE B2 -4 212 1 7 992 23 54 0 0 chr3 53453672 53453709 -106146074 + AT_rich Low_complexity Low_complexity 1 37 0 7 992 319 253 31 25 chr3 53454612 53454774 -106145009 + A-rich Low_complexity Low_complexity 5 167 0 7 992 515 140 17 26 chr3 53455455 53455471 -106144312 + polypyrimidine Low_complexity Low_complexity 104 119 0 7 992 1240 72 0 16 chr3 53455471 53455654 -106144129 + (TCTCC)n Simple_repeat Simple_repeat 1 180 0 7 992 515 140 17 26 chr3 53455654 53455754 -106144029 + CT-rich Low_complexity Low_complexity 4 103 0 7 992 192 40 0 0 chr3 53460913 53460938 -106138845 + (CAG)n Simple_repeat Simple_repeat 1 25 0 7 992 222 91 0 0 chr3 53461826 53461859 -106137924 + (CCCCCA)n Simple_repeat Simple_repeat 4 36 0 7 992 378 0 0 0 chr3 53463213 53463255 -106136528 + (TG)n Simple_repeat Simple_repeat 1 42 0 7 992 425 324 20 51 chr3 53464173 53464368 -106135415 - MER2 DNA MER2_type -6 339 151 7 992 208 139 0 0 chr3 53464374 53464410 -106135373 + (TTTTTG)n Simple_repeat Simple_repeat 2 37 0 7 992 3005 63 3 0 chr3 53464416 53464798 -106134985 - L1Md_F2 LINE L1 0 6582 6200 7 992 338 0 0 23 chr3 53464811 53464854 -106134929 + (TTTTG)n Simple_repeat Simple_repeat 2 43 0 7 992 1049 75 0 64 chr3 53464854 53465001 -106134782 - B1_Mus1 SINE Alu -10 138 1 7 992 255 355 62 28 chr3 53465005 53465150 -106134633 - MER2 DNA MER2_type -195 150 1 7 992 443 254 103 0 chr3 53465485 53465611 -106134172 - B3 SINE B2 -9 207 69 7 992 1012 139 100 30 chr3 53466691 53466891 -106132892 - Lx4A LINE L1 0 7058 6845 7 992 2150 210 192 13 chr3 53467082 53467690 -106132093 - RMER19A LTR ERVK -20 717 1 7 992 3250 128 29 10 chr3 53468736 53469250 -106130533 + RLTR28 LTR ERVL 1 524 0 7 992 423 250 50 44 chr3 53470130 53470289 -106129494 - ERVL-B4-int LTR ERVL -2066 3648 3489 7 992 276 30 0 0 chr3 53470535 53470568 -106129215 + (TTCA)n Simple_repeat Simple_repeat 2 34 0 7 992 1034 278 31 4 chr3 53471342 53471602 -106128181 - Lx6 LINE L1 -180 7280 7014 7 992 1467 174 33 11 chr3 53471602 53471875 -106127908 - Lx6 LINE L1 -705 6755 6477 7 992 21 57 0 0 chr3 53471889 53471924 -106127859 + AT_rich Low_complexity Low_complexity 1 35 0 7 992 527 280 85 0 chr3 53472026 53472215 -106127568 - B3 SINE B2 -11 205 1 7 992 24 77 0 0 chr3 53474176 53474228 -106125555 + AT_rich Low_complexity Low_complexity 1 52 0 7 992 417 39 0 0 chr3 53477110 53477161 -106122622 + (TG)n Simple_repeat Simple_repeat 2 52 0 7 992 435 290 83 66 chr3 53477191 53477372 -106122411 - B4A SINE B4 -8 284 101 7 993 1168 65 0 0 chr3 53477599 53477738 -106122045 + B1_Mus1 SINE Alu 1 139 -9 7 993 588 262 73 0 chr3 53477905 53478069 -106121714 + B4A SINE B4 3 178 -114 7 993 456 72 0 0 chr3 53478074 53478143 -106121640 + (CA)n Simple_repeat Simple_repeat 1 69 0 7 993 649 109 28 44 chr3 53478673 53478855 -106120928 + (TG)n Simple_repeat Simple_repeat 1 179 0 7 993 451 241 164 17 chr3 53478889 53479066 -106120717 - B3 SINE B2 -13 203 1 7 993 1190 180 15 0 chr3 53479100 53479306 -106120477 - B3 SINE B2 -6 210 2 7 993 2611 171 6 50 chr3 53479432 53479948 -106119835 + Lx2B LINE L1 6503 6995 -5 7 993 666 318 65 21 chr3 53480152 53480519 -106119264 - L1MA4A LINE L1 -372 5931 5551 7 993 207 0 0 0 chr3 53481940 53481963 -106117820 + (T)n Simple_repeat Simple_repeat 1 23 0 7 993 2937 91 13 2 chr3 53483873 53484269 -106115514 + MTB LTR MaLR 1 400 0 7 993 375 280 92 13 chr3 53484269 53484421 -106115362 - MTE2a LTR MaLR -207 172 9 7 993 265 213 26 26 chr3 53484866 53484943 -106114840 - MTD LTR MaLR -13 406 330 7 993 755 289 41 38 chr3 53484993 53485310 -106114473 + Charlie1a DNA MER1_type 935 1252 -203 7 993 23 33 0 0 chr3 53485341 53485371 -106114412 + AT_rich Low_complexity Low_complexity 1 30 0 7 993 360 0 0 0 chr3 53485375 53485415 -106114368 + (CA)n Simple_repeat Simple_repeat 2 41 0 7 993 574 40 0 0 chr3 53485429 53485503 -106114280 - B2_Mm2 SINE B2 -91 104 31 7 993 572 314 24 24 chr3 53485954 53485965 -106113818 - B3 SINE B2 -7 209 199 7 993 198 0 0 0 chr3 53485965 53485987 -106113796 + (TTTAA)n Simple_repeat Simple_repeat 3 24 0 7 993 572 314 24 24 chr3 53485987 53486184 -106113599 - B3 SINE B2 -18 198 1 7 993 1227 91 0 0 chr3 53487055 53487801 -106111982 + (CA)n Simple_repeat Simple_repeat 1 746 0 7 993 287 320 19 10 chr3 53488216 53488320 -106111463 + PB1D10 SINE Alu 1 105 -12 7 993 249 33 0 0 chr3 53492181 53492211 -106107572 + (TTTG)n Simple_repeat Simple_repeat 3 32 0 7 993 239 299 90 60 chr3 53492697 53492864 -106106919 - ORR1D1 LTR MaLR 0 374 203 7 993 2435 92 46 11 chr3 53492865 53493237 -106106546 - MTB_Mm LTR MaLR 0 407 23 7 993 387 0 0 0 chr3 53493237 53493280 -106106503 + (CA)n Simple_repeat Simple_repeat 2 44 0 7 993 468 247 93 35 chr3 53493298 53493470 -106106313 - ORR1D1 LTR MaLR -192 182 1 7 993 230 81 0 26 chr3 53494438 53494476 -106105307 + (TTTTTA)n Simple_repeat Simple_repeat 1 37 0 7 993 245 0 43 43 chr3 53494599 53494646 -106105137 + (TTTTTG)n Simple_repeat Simple_repeat 2 48 0 7 993 2469 108 20 42 chr3 53495587 53495994 -106103789 + Lx3_Mus LINE L1 6610 7007 -2 7 993 198 103 0 0 chr3 53496266 53496295 -106103488 + (T)n Simple_repeat Simple_repeat 1 29 0 7 993 403 202 0 12 chr3 53496998 53497078 -106102705 - ID_B1 SINE B4 -34 190 112 7 993 252 273 38 25 chr3 53497013 53497092 -106102691 - PB1D9 SINE Alu -23 97 18 7 993 853 134 120 17 chr3 53497125 53497300 -106102483 + ORR1B2 LTR MaLR 1 193 -174 7 993 21 0 0 0 chr3 53497317 53497338 -106102445 + AT_rich Low_complexity Low_complexity 1 21 0 7 993 447 135 117 0 chr3 53497338 53497449 -106102334 + RMER1B Other Other 943 1066 0 7 993 297 236 0 0 chr3 53497449 53497504 -106102279 + ORR1B2 LTR MaLR 324 378 0 7 993 1259 237 17 92 chr3 53497504 53497853 -106101930 + ORR1E LTR MaLR 13 335 -24 7 993 308 289 72 0 chr3 53498569 53498666 -106101117 + PB1D10 SINE Alu 7 110 -7 7 993 830 196 0 20 chr3 53499377 53499632 -106100151 + GA-rich Low_complexity Low_complexity 1 250 0 7 993 208 139 28 0 chr3 53500005 53500041 -106099742 + GA-rich Low_complexity Low_complexity 4 40 0 1 993 665 304 5 5 chr3 53500640 53500832 -106098951 + MTE2b LTR MaLR 2 193 -186 2 993 21 36 0 0 chr3 53500832 53500860 -106098923 + AT_rich Low_complexity Low_complexity 1 28 0 3 993 2439 187 205 58 chr3 53500860 53501037 -106098746 - Lx7 LINE L1 -23 7673 7450 4 993 513 80 0 0 chr3 53501037 53501112 -106098671 + (CA)n Simple_repeat Simple_repeat 2 76 0 5 993 2439 187 205 58 chr3 53501112 53501662 -106098121 - Lx7 LINE L1 -247 7449 6841 4 993 2255 156 44 15 chr3 53501754 53501782 -106098001 - MTC LTR MaLR 0 421 394 6 993 3422 40 2 0 chr3 53501782 53502177 -106097606 + MTA_Mm LTR MaLR 1 396 0 7 993 2255 156 44 15 chr3 53502177 53502557 -106097226 - MTC LTR MaLR -28 393 1 6 993 1654 185 214 18 chr3 53502726 53503183 -106096600 + RMER15 LTR ERVL 29 575 0 8 993 387 0 0 0 chr3 53503628 53503671 -106096112 + (TA)n Simple_repeat Simple_repeat 1 43 0 9 993 252 0 0 0 chr3 53504856 53504884 -106094899 + (T)n Simple_repeat Simple_repeat 1 28 0 1 993 883 219 19 19 chr3 53505038 53505243 -106094540 - B3 SINE B2 0 216 12 1 993 323 281 25 58 chr3 53505259 53505380 -106094403 - PB1D10 SINE Alu 0 117 1 1 993 515 234 16 0 chr3 53505716 53505840 -106093943 + RSINE1 SINE B4 3 128 -37 1 993 21 0 0 0 chr3 53506979 53507000 -106092783 + AT_rich Low_complexity Low_complexity 1 21 0 1 993 378 0 0 0 chr3 53507602 53507644 -106092139 + (TG)n Simple_repeat Simple_repeat 2 43 0 1 993 275 122 20 0 chr3 53508074 53508123 -106091660 + (TCTG)n Simple_repeat Simple_repeat 3 52 0 1 993 349 129 29 0 chr3 53508995 53509065 -106090718 + (TA)n Simple_repeat Simple_repeat 1 72 0 1 993 25 31 0 0 chr3 53509103 53509135 -106090648 + AT_rich Low_complexity Low_complexity 1 32 0 1 993 27 0 0 0 chr3 53510815 53510842 -106088941 + AT_rich Low_complexity Low_complexity 1 27 0 1 993 224 296 28 14 chr3 53510842 53510914 -106088869 + ID SINE ID 5 77 -147 2 993 224 304 0 42 chr3 53510852 53510924 -106088859 + BC1_Mm scRNA scRNA 16 84 -68 2 993 880 253 75 26 chr3 53511816 53512087 -106087696 + Lx9 LINE L1 7191 7516 -128 2 993 387 0 0 0 chr3 53512087 53512130 -106087653 + (TG)n Simple_repeat Simple_repeat 2 44 0 2 993 364 127 138 87 chr3 53512130 53512250 -106087533 + Lx9 LINE L1 7517 7644 0 2 993 5749 59 0 3 chr3 53512527 53513236 -106086547 - L1Md_F2 LINE L1 -12 6570 5864 2 993 213 175 0 0 chr3 53513636 53513676 -106086107 + CT-rich Low_complexity Low_complexity 1 40 0 2 993 1202 85 11 0 chr3 53513712 53513888 -106085895 + (TTCC)n Simple_repeat Simple_repeat 3 180 0 2 993 26 30 0 0 chr3 53514370 53514403 -106085380 + AT_rich Low_complexity Low_complexity 1 33 0 2 993 613 150 207 24 chr3 53514703 53514867 -106084916 - URR1A DNA MER1_type 0 226 33 2 993 2866 39 3 0 chr3 53515997 53516333 -106083450 + L1Md_F2 LINE L1 5250 5586 -297 2 993 8217 46 4 5 chr3 53516333 53517330 -106082453 + L1Md_F2 LINE L1 5587 6582 0 2 993 654 254 149 0 chr3 53518634 53518815 -106080968 - B3 SINE B2 -4 212 5 3 993 38743 30 1 1 chr3 53519031 53525883 -106073900 - L1Md_T LINE L1 0 6585 1 3 993 975 221 24 5 chr3 53526004 53526213 -106073570 - B3 SINE B2 -3 213 1 3 993 190 340 62 46 chr3 53526566 53526760 -106073023 - L3 LINE CR1 -310 4179 3983 3 993 3565 23 0 132 chr3 53526870 53527371 -106072412 + RLTR10C LTR ERVK 2 436 0 3 993 501 322 21 0 chr3 53528232 53528375 -106071408 - RSINE1 SINE B4 -9 156 11 3 993 835 145 58 0 chr3 53530131 53530269 -106069514 + B1_Mus2 SINE Alu 1 146 -1 3 993 277 62 42 0 chr3 53530300 53530348 -106069435 + (CAAAA)n Simple_repeat Simple_repeat 2 51 0 3 993 1275 27 0 0 chr3 53530402 53530549 -106069234 - B1_Mm SINE Alu 0 147 1 3 993 2305 121 36 68 chr3 53530862 53531304 -106068479 - Lx4A LINE L1 -1 7057 6630 3 993 605 276 66 20 chr3 53531731 53531927 -106067856 + B3 SINE B2 2 206 -10 4 993 216 0 0 0 chr3 53532163 53532187 -106067596 + (TGGGGG)n Simple_repeat Simple_repeat 2 25 0 4 993 670 304 6 0 chr3 53532847 53533028 -106066755 + B3 SINE B2 1 182 -34 4 993 438 210 20 10 chr3 53533382 53533483 -106066300 + MLT1D LTR MaLR 400 501 -4 4 993 315 0 0 0 chr3 53535844 53535879 -106063904 + (T)n Simple_repeat Simple_repeat 1 35 0 4 993 2057 175 20 15 chr3 53536633 53537038 -106062745 + MTB_Mm LTR MaLR 1 407 0 4 993 234 261 77 0 chr3 53537115 53537180 -106062603 - MIRc SINE MIR -102 166 97 4 993 1997 173 259 17 chr3 53537344 53537827 -106061956 + MT2B LTR ERVL 2 601 0 4 993 419 0 20 0 chr3 53537898 53537949 -106061834 + (CA)n Simple_repeat Simple_repeat 2 53 0 4 993 294 354 59 28 chr3 53538022 53538344 -106061439 - MER57C2 LTR ERV1 -65 369 25 4 993 421 222 8 127 chr3 53538848 53538982 -106060801 - B3 SINE B2 -92 124 7 5 993 872 172 9 13 chr3 53539624 53539854 -106059929 + (CATATA)n Simple_repeat Simple_repeat 1 229 0 5 993 25 0 0 0 chr3 53540384 53540409 -106059374 + AT_rich Low_complexity Low_complexity 1 25 0 5 993 252 0 0 0 chr3 53540762 53540790 -106058993 + (TC)n Simple_repeat Simple_repeat 2 29 0 5 993 455 240 65 20 chr3 53542833 53542986 -106056797 - Lx9 LINE L1 -8 7636 7477 5 993 387 242 0 0 chr3 53543005 53543125 -106056658 + (TG)n Simple_repeat Simple_repeat 1 120 0 5 993 1452 182 196 6 chr3 53544216 53544558 -106055225 - MTD LTR MaLR -12 407 1 5 993 624 180 33 0 chr3 53545304 53545426 -106054357 - B3 SINE B2 -86 130 5 5 993 37 0 0 0 chr3 53545438 53545475 -106054308 + AT_rich Low_complexity Low_complexity 1 37 0 5 993 373 203 0 0 chr3 53545656 53545730 -106054053 - MER20 DNA MER1_type -61 158 85 5 993 768 111 16 114 chr3 53546343 53546536 -106053247 + RMER17C LTR ERVK 1 174 -236 6 993 6270 53 38 2 chr3 53546539 53547408 -106052375 + RLTR13B3 LTR ERVK 30 929 0 6 993 1107 132 8 93 chr3 53547408 53547673 -106052110 + RMER17C LTR ERVK 169 410 0 6 993 688 277 73 27 chr3 53547848 53548108 -106051675 - B4 SINE B4 0 292 21 6 993 231 257 95 0 chr3 53549682 53549756 -106050027 + B4 SINE B4 1 81 -211 6 993 1150 120 43 16 chr3 53549828 53550001 -106049782 + B2_Mm1t SINE B2 1 181 -12 6 993 303 28 0 0 chr3 53550001 53550037 -106049746 + (TAAA)n Simple_repeat Simple_repeat 2 37 0 6 993 1150 120 43 16 chr3 53550037 53550049 -106049734 + B2_Mm1t SINE B2 182 191 -2 6 993 1217 81 11 0 chr3 53550107 53550281 -106049502 + (TTCC)n Simple_repeat Simple_repeat 3 178 0 6 993 276 150 0 0 chr3 53550281 53550321 -106049462 + (TC)n Simple_repeat Simple_repeat 1 40 0 6 993 887 182 12 0 chr3 53550321 53550563 -106049220 + CT-rich Low_complexity Low_complexity 1 245 0 6 993 206 32 32 0 chr3 53551190 53551221 -106048562 + (TTG)n Simple_repeat Simple_repeat 2 33 0 6 993 529 240 16 16 chr3 53551230 53551353 -106048430 - B3 SINE B2 -1 215 93 7 993 620 184 0 0 chr3 53551421 53551535 -106048248 - B3 SINE B2 -102 114 1 7 993 25 0 0 0 chr3 53551641 53551666 -106048117 + AT_rich Low_complexity Low_complexity 1 25 0 7 993 809 279 127 45 chr3 53551704 53552339 -106047444 + L1MC2 LINE L1 5258 5982 -1803 7 993 1134 236 135 13 chr3 53552359 53552722 -106047061 - MTD LTR MaLR 0 379 6 7 993 4686 42 5 0 chr3 53553242 53553796 -106045987 + L1Md_T LINE L1 6024 6580 -2 7 993 297 253 81 81 chr3 53553838 53553937 -106045846 - MER45C DNA Tip100 -854 99 1 7 993 255 279 0 75 chr3 53554310 53554403 -106045380 + L2b LINE L2 3300 3387 0 7 993 554 267 80 6 chr3 53555040 53555202 -106044581 + B4A SINE B4 118 291 -1 7 993 414 0 0 0 chr3 53555212 53555258 -106044525 + (CA)n Simple_repeat Simple_repeat 2 47 0 7 993 198 222 0 0 chr3 53555259 53555313 -106044470 + GA-rich Low_complexity Low_complexity 3 56 0 7 993 221 140 18 0 chr3 53555839 53555896 -106043887 + T-rich Low_complexity Low_complexity 2 59 0 8 993 572 309 77 15 chr3 53556752 53557025 -106042758 + B4A SINE B4 1 290 -2 8 993 203 305 134 0 chr3 53557571 53557653 -106042130 + MIR SINE MIR 160 252 -10 8 993 248 286 0 0 chr3 53557668 53557731 -106042052 + (TG)n Simple_repeat Simple_repeat 1 63 0 8 993 630 279 12 19 chr3 53557761 53557922 -106041861 - B4A SINE B4 -9 283 124 8 993 780 229 73 16 chr3 53558004 53558195 -106041588 + B3 SINE B2 1 202 -14 8 993 207 100 0 0 chr3 53558196 53558226 -106041557 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 8 993 475 325 56 71 chr3 53558317 53558569 -106041214 - MIR SINE MIR -13 249 2 8 993 180 0 0 0 chr3 53558578 53558598 -106041185 + (CTG)n Simple_repeat Simple_repeat 1 20 0 8 993 1604 217 211 7 chr3 53558689 53559130 -106040653 + MT2A LTR ERVL 3 533 0 8 993 1107 207 132 35 chr3 53561058 53561398 -106038385 - MTEb LTR MaLR -2 377 5 9 993 205 279 0 16 chr3 53561919 53561981 -106037802 + (CATATA)n Simple_repeat Simple_repeat 6 66 0 9 993 899 207 61 20 chr3 53562064 53562261 -106037522 - B3 SINE B2 -10 206 2 9 993 7290 97 49 9 chr3 53562467 53563598 -106036185 + Lx LINE L1 5487 6654 0 9 993 552 56 0 0 chr3 53563807 53563879 -106035904 + (TCTA)n Simple_repeat Simple_repeat 2 73 0 9 993 201 229 0 0 chr3 53563879 53563914 -106035869 + polypyrimidine Low_complexity Low_complexity 3 37 0 9 993 1804 21 0 0 chr3 53564254 53564446 -106035337 - B2_Mm1a SINE B2 -1 192 1 9 993 531 0 0 0 chr3 53565268 53565327 -106034456 + (TC)n Simple_repeat Simple_repeat 2 60 0 9 993 240 86 0 0 chr3 53565327 53565361 -106034422 + (TG)n Simple_repeat Simple_repeat 2 36 0 9 993 358 279 77 8 chr3 53565540 53565670 -106034113 + MLT1N2 LTR MaLR 352 490 -72 9 993 186 43 0 0 chr3 53566265 53566288 -106033495 + (TTC)n Simple_repeat Simple_repeat 2 24 0 1 993 4443 115 8 0 chr3 53566292 53566891 -106032892 - Lx2 LINE L1 -6 6991 6388 1 993 383 269 25 8 chr3 53567001 53567121 -106032662 + (TATG)n Simple_repeat Simple_repeat 1 122 0 1 993 2605 75 26 14 chr3 53567184 53567536 -106032247 - L1_Mus4 LINE L1 -2 6634 6279 1 993 918 312 48 4 chr3 53567552 53567822 -106031961 - B4A SINE B4 -8 284 3 1 993 228 180 43 116 chr3 53568516 53568585 -106031198 + RMER13A LTR ERVK 205 268 -592 1 993 325 355 74 35 chr3 53568531 53568814 -106030969 - MLT1H LTR MaLR -219 330 37 1 993 582 217 35 21 chr3 53569340 53569481 -106030302 + B3 SINE B2 72 214 -2 1 993 360 287 0 29 chr3 53569727 53569831 -106029952 - MTEa LTR MaLR -276 103 3 1 993 249 33 0 0 chr3 53570168 53570198 -106029585 + (CA)n Simple_repeat Simple_repeat 2 31 0 1 993 6592 65 1 2 chr3 53570452 53571248 -106028535 - L1_Mus1 LINE L1 0 6567 5773 1 993 2822 82 0 3 chr3 53571248 53571617 -106028166 + L1_Mus1 LINE L1 5370 5737 -146 1 993 885 190 0 0 chr3 53571808 53571987 -106027796 + GA-rich Low_complexity Low_complexity 2 180 0 1 993 235 92 77 0 chr3 53572962 53573027 -106026756 + (TCTA)n Simple_repeat Simple_repeat 2 71 0 1 993 810 111 0 0 chr3 53573016 53573079 -106026704 + (TC)n Simple_repeat Simple_repeat 2 64 0 1 993 1040 81 0 7 chr3 53573079 53573228 -106026555 + (TTCC)n Simple_repeat Simple_repeat 2 149 0 1 993 810 111 0 0 chr3 53573228 53573290 -106026493 + (TC)n Simple_repeat Simple_repeat 2 63 0 1 993 425 346 57 6 chr3 53573983 53574160 -106025623 - MLT1G3 LTR MaLR -15 580 395 1 993 235 320 98 56 chr3 53574393 53574727 -106025056 - ORR1C2 LTR MaLR -14 365 19 1 993 672 299 52 80 chr3 53574985 53575371 -106024412 + MTEa LTR MaLR 1 375 -4 1 993 349 256 154 55 chr3 53575494 53575676 -106024107 + MER45R DNA Tip100 58 257 -1324 1 993 1311 286 37 69 chr3 53575717 53576506 -106023277 + L1_Rod LINE L1 5043 5793 -87 1 993 24 0 0 0 chr3 53576838 53576862 -106022921 + AT_rich Low_complexity Low_complexity 1 24 0 1 993 377 289 115 97 chr3 53576862 53577211 -106022572 + MER45R DNA Tip100 604 958 -623 1 993 660 153 0 21 chr3 53577356 53577496 -106022287 + (TA)n Simple_repeat Simple_repeat 1 137 0 1 993 2163 194 51 28 chr3 53577555 53577989 -106021794 + Lx5 LINE L1 6546 6989 -61 1 993 478 319 74 70 chr3 53578023 53578468 -106021315 + MER45R DNA Tip100 1132 1578 -3 1 993 1153 233 70 63 chr3 53578518 53578833 -106020950 - ORR1D2 LTR MaLR -6 364 48 1 993 1814 178 70 117 chr3 53578833 53579087 -106020696 + RLTR11A LTR ERVK 1 256 -272 1 993 3369 53 8 2 chr3 53579087 53579485 -106020298 - MTB LTR MaLR 0 400 1 1 993 339 25 0 0 chr3 53579488 53579528 -106020255 + (AGGGGG)n Simple_repeat Simple_repeat 6 45 0 1 993 1814 178 70 117 chr3 53579528 53579823 -106019960 + RLTR11A LTR ERVK 257 528 0 1 993 305 130 18 36 chr3 53579823 53579876 -106019907 - ORR1D2 LTR MaLR -317 53 2 1 993 188 354 25 12 chr3 53580661 53580741 -106019042 - L2b LINE L2 -225 3150 3070 1 993 255 31 0 0 chr3 53582726 53582758 -106017025 + (TG)n Simple_repeat Simple_repeat 1 32 0 1 993 355 296 0 80 chr3 53582828 53582953 -106016830 - B4A SINE B4 -93 199 85 1 993 578 232 1 1 chr3 53583807 53583942 -106015841 - L1M2 LINE L1 -2354 3792 3655 1 993 17006 72 31 7 chr3 53583942 53586935 -106012848 - MusHAL1 LINE L1 -281 3072 6 1 993 329 261 0 0 chr3 53588706 53588775 -106011008 + tRNA-Ala-GCY_ tRNA tRNA 4 72 -3 1 993 288 0 0 0 chr3 53589858 53589890 -106009893 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 1 993 1290 51 0 0 chr3 53589890 53590047 -106009736 - B2_Mm2 SINE B2 -38 157 1 1 993 227 237 24 71 chr3 53590369 53590496 -106009287 + T-rich Low_complexity Low_complexity 2 122 0 1 993 330 26 0 0 chr3 53590686 53590725 -106009058 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 993 3351 254 22 27 chr3 53591184 53592005 -106007778 - RMER1C Other Other -1 1341 525 1 993 1629 259 29 20 chr3 53592064 53592284 -106007499 + Lx8 LINE L1 6182 6406 -1067 1 993 204 158 0 0 chr3 53592284 53592322 -106007461 + (CATG)n Simple_repeat Simple_repeat 1 38 0 1 993 1629 259 29 20 chr3 53592322 53592543 -106007240 + Lx8 LINE L1 6407 6627 -846 1 993 1035 275 49 125 chr3 53592545 53592952 -106006831 + MTE2a LTR MaLR 4 379 0 1 993 672 270 73 71 chr3 53592952 53593247 -106006536 + MTE2a-int LTR MaLR 1 280 -978 1 993 243 0 0 0 chr3 53593247 53593274 -106006509 + (TGGGGG)n Simple_repeat Simple_repeat 6 32 0 1 993 464 304 70 91 chr3 53593274 53593307 -106006476 + MTE2a-int LTR MaLR 281 321 -937 1 993 766 315 100 38 chr3 53593319 53593639 -106006144 + MTE2a-int LTR MaLR 747 1086 -494 1 993 253 296 47 16 chr3 53593650 53593777 -106006006 + L1MC3 LINE L1 6979 7109 -676 1 993 274 291 201 18 chr3 53593891 53594280 -106005503 + L1MC3 LINE L1 7307 7766 -19 1 993 249 234 0 0 chr3 53594818 53594865 -106004918 + B4A SINE B4 239 285 -7 1 993 466 233 9 19 chr3 53595141 53595246 -106004537 - PB1D10 SINE Alu -8 109 6 1 993 227 211 0 34 chr3 53596253 53596312 -106003471 - MLT1A1 LTR MaLR 0 408 352 1 993 468 0 0 0 chr3 53596315 53596367 -106003416 + (GA)n Simple_repeat Simple_repeat 2 53 0 1 993 220 205 0 0 chr3 53596399 53596438 -106003345 + GA-rich Low_complexity Low_complexity 2 40 0 1 993 598 224 184 11 chr3 53596771 53597015 -106002768 + L1M3 LINE L1 5422 5712 -600 1 993 188 67 33 0 chr3 53600651 53600681 -105999102 + (TTTC)n Simple_repeat Simple_repeat 4 34 0 1 993 2730 29 13 3 chr3 53601189 53601505 -105998278 - L1Md_F2 LINE L1 0 6582 6264 1 993 2047 142 115 0 chr3 53602429 53602768 -105997015 + ORR1C1 LTR MaLR 1 378 0 1 993 1233 62 0 0 chr3 53602947 53603092 -105996691 - B1_Mus2 SINE Alu -1 146 2 1 993 288 53 0 0 chr3 53603102 53603140 -105996643 + (A)n Simple_repeat Simple_repeat 1 38 0 1 993 283 261 32 119 chr3 53603316 53603442 -105996341 + RSINE1 SINE B4 2 116 -49 1 993 1190 155 17 83 chr3 53604549 53604789 -105994994 - URR1B DNA MER1_type 0 225 2 1 993 257 130 87 0 chr3 53604837 53604883 -105994900 + MTEa LTR MaLR 1 50 -329 1 993 297 0 0 0 chr3 53604896 53604929 -105994854 + (TC)n Simple_repeat Simple_repeat 2 34 0 1 993 387 0 0 0 chr3 53604929 53604971 -105994812 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 993 198 347 51 51 chr3 53605303 53605479 -105994304 + L2 LINE L2 2292 2467 -952 1 993 489 296 37 43 chr3 53605608 53605795 -105993988 - B3 SINE B2 -30 186 1 1 993 258 352 80 58 chr3 53606099 53606325 -105993458 + LTR16D2 LTR ERVL 237 467 -105 1 993 6385 85 27 0 chr3 53606632 53608318 -105991465 + L1Md_F LINE L1 281 2014 -3869 1 124 10318 21 0 0 chr3 53608316 53609490 -105990293 + L1Md_T LINE L1 4413 5586 -297 1 994 8868 31 4 1 chr3 53609490 53610483 -105989300 + L1Md_T LINE L1 5587 6582 0 1 994 623 282 19 96 chr3 53610544 53610752 -105989031 + B3A SINE B2 7 198 0 1 994 513 0 0 0 chr3 53612008 53612065 -105987718 + (TAGA)n Simple_repeat Simple_repeat 2 58 0 1 994 5245 58 0 8 chr3 53612626 53613255 -105986528 + L1Md_F2 LINE L1 5947 6570 -12 1 994 243 0 0 0 chr3 53613306 53613333 -105986450 + (TAAAA)n Simple_repeat Simple_repeat 2 28 0 1 994 503 313 53 20 chr3 53613546 53613696 -105986087 + B3A SINE B2 2 156 -42 1 994 321 26 0 0 chr3 53613722 53613760 -105986023 + (CA)n Simple_repeat Simple_repeat 2 39 0 1 994 279 299 140 52 chr3 53614252 53614519 -105985264 + L1MB8 LINE L1 4882 5180 -966 1 994 1425 97 16 0 chr3 53614519 53614705 -105985078 + B2_Mm2 SINE B2 1 189 -6 1 994 486 311 112 31 chr3 53614705 53615160 -105984623 + L1MB8 LINE L1 5181 5657 -527 1 994 678 271 49 40 chr3 53615170 53615331 -105984452 + L1MB8 LINE L1 5871 6037 -141 1 994 315 0 0 0 chr3 53615331 53615366 -105984417 + (TTTG)n Simple_repeat Simple_repeat 1 35 0 1 994 678 271 49 40 chr3 53615366 53615508 -105984275 + L1MB8 LINE L1 6038 6177 -1 1 994 240 287 62 56 chr3 53616394 53616538 -105983245 + L1MC LINE L1 4801 4945 -1201 1 994 334 344 23 38 chr3 53616538 53616671 -105983112 + RSINE1 SINE B4 12 142 -23 1 994 459 0 0 0 chr3 53616689 53616740 -105983043 + (TAAA)n Simple_repeat Simple_repeat 4 54 0 1 994 202 44 55 68 chr3 53616743 53616816 -105982967 + (TTATA)n Simple_repeat Simple_repeat 5 76 0 1 994 276 221 12 83 chr3 53616866 53616950 -105982833 - RLTR18 LTR ERVK -343 273 196 1 994 681 273 80 42 chr3 53616988 53617225 -105982558 - RLTR18B LTR ERVK -245 267 22 1 994 427 17 16 16 chr3 53617787 53617848 -105981935 + (TAAA)n Simple_repeat Simple_repeat 4 64 0 1 994 2328 158 7 40 chr3 53618154 53618386 -105981397 + MTB_Mm LTR MaLR 1 227 -180 1 994 2324 133 14 3 chr3 53618386 53618740 -105981043 + RLTR15 LTR ERVK 2 359 0 1 994 2328 158 7 40 chr3 53618740 53618928 -105980855 + MTB_Mm LTR MaLR 228 407 0 1 994 245 29 29 0 chr3 53618967 53619001 -105980782 + (CAAAA)n Simple_repeat Simple_repeat 5 39 0 1 994 254 330 37 0 chr3 53619132 53619250 -105980533 - MER90 LTR ERV1 -97 517 356 1 994 3315 68 5 0 chr3 53619278 53619672 -105980111 - MTA_Mm LTR MaLR 0 396 1 1 994 3274 89 16 71 chr3 53619672 53619755 -105980028 - MTA_Mm-int LTR MaLR 0 1098 1047 1 994 1125 57 41 28 chr3 53619755 53619900 -105979883 - B1_Mus2 SINE Alu 0 147 1 1 994 3274 89 16 71 chr3 53619900 53620362 -105979421 - MTA_Mm-int LTR MaLR -52 1046 583 1 994 596 346 31 27 chr3 53620421 53620682 -105979101 + MER90a LTR ERV1 81 342 -272 1 994 5062 96 27 59 chr3 53620876 53621652 -105978131 - RMER17A LTR ERVK 0 751 1 1 994 250 326 20 0 chr3 53621670 53621768 -105978015 + MLT1A0 LTR MaLR 11 110 -255 1 994 186 353 106 48 chr3 53622455 53622833 -105976950 + L2c LINE L2 2933 3332 -55 1 994 337 258 108 0 chr3 53622979 53623072 -105976711 - B3 SINE B2 -11 205 103 1 994 3435 181 35 3 chr3 53623179 53623198 -105976585 - L1_Mur2 LINE L1 -3944 1933 1916 1 994 7286 171 42 15 chr3 53623198 53624475 -105975308 - Lx5 LINE L1 0 7050 5739 1 994 3435 191 41 6 chr3 53624475 53625421 -105974362 - L1_Mur2 LINE L1 -3962 1915 882 1 994 255 31 0 0 chr3 53625830 53625862 -105973921 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 1 994 708 307 39 5 chr3 53625897 53626100 -105973683 - B3 SINE B2 -1 215 6 1 994 27 0 0 0 chr3 53626911 53626938 -105972845 + AT_rich Low_complexity Low_complexity 1 27 0 1 994 35 41 0 0 chr3 53627956 53628005 -105971778 + AT_rich Low_complexity Low_complexity 1 49 0 1 994 309 118 0 0 chr3 53628019 53628070 -105971713 + (TG)n Simple_repeat Simple_repeat 1 51 0 1 994 526 272 46 26 chr3 53628088 53628239 -105971544 - RSINE1 SINE B4 -10 155 2 1 994 247 218 161 9 chr3 53628481 53628625 -105971158 - L1M5 LINE L1 -334 5830 5660 2 994 213 277 77 0 chr3 53629993 53630058 -105969725 + ID4_ SINE ID 2 71 -12 2 994 23 92 0 0 chr3 53630298 53630363 -105969420 + AT_rich Low_complexity Low_complexity 1 65 0 2 994 194 0 0 37 chr3 53630579 53630606 -105969177 + (CAAAA)n Simple_repeat Simple_repeat 3 28 0 2 994 410 326 177 20 chr3 53631947 53632297 -105967486 + ERVL-B4-int LTR ERVL 2039 2443 -3271 2 994 262 333 116 22 chr3 53632785 53632923 -105966860 + ERVL-B4-int LTR ERVL 2951 3101 -2613 2 994 258 257 14 41 chr3 53633358 53633431 -105966352 + ERVL-E-int LTR ERVL 4619 4689 -978 2 994 303 244 12 0 chr3 53633559 53633645 -105966138 + L1MC3 LINE L1 7576 7662 -123 2 994 782 206 21 0 chr3 53633721 53633862 -105965921 + B1_Mur4 SINE Alu 2 145 -5 2 994 707 132 7 0 chr3 53634042 53634193 -105965590 + (GA)n Simple_repeat Simple_repeat 2 153 0 2 994 330 26 0 0 chr3 53634929 53634968 -105964815 + (TC)n Simple_repeat Simple_repeat 2 40 0 2 994 243 0 0 0 chr3 53634968 53634994 -105964789 + (TG)n Simple_repeat Simple_repeat 2 28 0 2 994 262 187 98 108 chr3 53635005 53635107 -105964676 - RLTR25B LTR ERVK -186 842 742 2 994 4189 166 65 96 chr3 53635184 53635604 -105964179 - RLTR25A LTR ERVK -156 947 506 2 994 1271 35 14 0 chr3 53635604 53635748 -105964035 + B1_Mus2 SINE Alu 2 147 0 2 994 4189 166 65 96 chr3 53635748 53635790 -105963993 - RLTR25A LTR ERVK -598 505 505 2 994 1415 76 5 37 chr3 53635790 53635981 -105963802 + B2_Mm1t SINE B2 2 186 -7 2 994 4189 166 65 96 chr3 53635981 53636489 -105963294 - RLTR25A LTR ERVK -598 505 6 2 994 205 284 30 0 chr3 53636923 53636990 -105962793 + MER5A DNA MER1_type 97 165 -24 2 994 1730 187 241 11 chr3 53637581 53638045 -105961738 - Lx9 LINE L1 -1 7643 7073 2 994 769 196 40 47 chr3 53638513 53638663 -105961120 - B1_Mur2 SINE Alu 0 149 1 2 994 239 79 26 0 chr3 53638804 53638842 -105960941 + (GAAA)n Simple_repeat Simple_repeat 2 40 0 2 994 3194 183 65 6 chr3 53639452 53640127 -105959656 + RLTR40 LTR ERVK 39 753 -64 2 994 41585 14 2 7 chr3 53640127 53646524 -105953259 - L1Md_A LINE L1 -4 6578 214 2 994 361 206 15 0 chr3 53646533 53646601 -105953182 + RLTR40 LTR ERVK 746 814 -3 2 994 262 265 121 0 chr3 53646831 53646914 -105952869 - B3 SINE B2 -9 207 115 2 994 610 116 42 0 chr3 53647330 53647425 -105952358 + U6 snRNA snRNA 3 101 -6 2 994 258 95 0 0 chr3 53647429 53647471 -105952312 + (CAAAAA)n Simple_repeat Simple_repeat 2 43 0 2 994 273 29 0 0 chr3 53648234 53648268 -105951515 + (TTTTTG)n Simple_repeat Simple_repeat 2 35 0 2 994 369 43 0 0 chr3 53649127 53649174 -105950609 + (TC)n Simple_repeat Simple_repeat 2 48 0 2 994 312 27 0 0 chr3 53649174 53649210 -105950573 + (TA)n Simple_repeat Simple_repeat 2 38 0 2 994 979 168 80 15 chr3 53649425 53649625 -105950158 + B3 SINE B2 4 216 0 2 994 1196 69 0 14 chr3 53649644 53649791 -105949992 + B1_Mus1 SINE Alu 2 146 -2 2 994 180 77 0 0 chr3 53649795 53649821 -105949962 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 2 994 279 79 0 0 chr3 53649815 53649853 -105949930 + (GAAAA)n Simple_repeat Simple_repeat 2 39 0 2 994 187 289 21 62 chr3 53650015 53650111 -105949672 + L2c LINE L2 3260 3351 -36 2 994 2148 123 33 45 chr3 53650289 53650620 -105949163 + ORR1A2 LTR MaLR 1 327 0 2 994 203 268 100 20 chr3 53652632 53652743 -105947040 + MIRb SINE MIR 134 258 -10 2 994 602 240 67 89 chr3 53652906 53653277 -105946506 - L1MC LINE L1 -2098 4048 3686 2 994 252 0 0 0 chr3 53653721 53653749 -105946034 + (CCA)n Simple_repeat Simple_repeat 2 29 0 2 994 449 355 108 50 chr3 53654013 53654336 -105945447 - ORR1E LTR MaLR 0 359 18 2 994 1075 197 0 32 chr3 53655598 53655765 -105944018 + B3 SINE B2 1 167 -49 2 994 194 0 39 0 chr3 53655765 53655791 -105943992 + (CATA)n Simple_repeat Simple_repeat 4 30 0 2 994 1075 197 0 32 chr3 53655791 53655812 -105943971 + B3 SINE B2 168 183 -33 2 994 609 14 0 0 chr3 53656066 53656136 -105943647 + (TC)n Simple_repeat Simple_repeat 1 70 0 2 994 3770 66 2 2 chr3 53656425 53656883 -105942900 - L1Md_F2 LINE L1 -1 6581 6124 2 994 1551 162 107 66 chr3 53657761 53658125 -105941658 - ORR1C2 LTR MaLR 0 384 6 2 994 772 264 57 0 chr3 53658907 53659100 -105940683 - B3 SINE B2 -11 205 2 2 994 428 274 218 0 chr3 53659279 53659403 -105940380 - RSINE1 SINE B4 0 165 15 2 994 1061 79 0 0 chr3 53664604 53664743 -105935040 + B1_Mm SINE Alu 8 146 -1 2 994 779 230 62 10 chr3 53665422 53665615 -105934168 - B3 SINE B2 -7 209 7 2 994 1077 95 37 19 chr3 53665616 53665777 -105934006 + B2_Mm1t SINE B2 3 166 -27 2 994 374 219 66 21 chr3 53665855 53665961 -105933822 - B1_Mm SINE Alu -40 107 3 2 994 180 97 0 0 chr3 53666629 53666660 -105933123 + (A)n Simple_repeat Simple_repeat 1 31 0 2 994 630 276 76 79 chr3 53669239 53669476 -105930307 - RMER21B LTR ERV1 -275 567 325 2 994 207 0 0 0 chr3 53669476 53669499 -105930284 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2 994 630 276 76 79 chr3 53669499 53669552 -105930231 - RMER21B LTR ERV1 -518 324 279 2 994 254 203 28 99 chr3 53669604 53669675 -105930108 - RMER21B LTR ERV1 -776 66 1 2 994 508 232 62 72 chr3 53670009 53670204 -105929579 + RMER10A LTR ERVL 234 426 -16 2 994 477 0 0 0 chr3 53672080 53672133 -105927650 + (TG)n Simple_repeat Simple_repeat 2 54 0 2 994 210 174 0 0 chr3 53672512 53672558 -105927225 + (CCCA)n Simple_repeat Simple_repeat 2 47 0 2 994 555 16 0 0 chr3 53673930 53673994 -105925789 + (TA)n Simple_repeat Simple_repeat 2 65 0 2 994 197 289 167 14 chr3 53673996 53674140 -105925643 - MIR SINE MIR -85 177 12 2 994 375 323 6 37 chr3 53674897 53675061 -105924722 - RLTR6-int LTR ERV1 -329 7449 7291 2 994 2168 129 162 32 chr3 53675487 53675888 -105923895 + RLTR11B LTR ERVK 1 453 0 2 994 317 219 118 45 chr3 53676364 53676474 -105923309 - RLTR42-int LTR ERVK -2159 3978 3861 2 994 459 52 0 0 chr3 53676642 53676700 -105923083 + (TG)n Simple_repeat Simple_repeat 1 58 0 2 994 520 243 5 91 chr3 53676709 53676895 -105922888 - RLTR42-int LTR ERVK -2456 3681 3512 2 994 338 245 121 100 chr3 53676905 53677145 -105922638 - RLTR42-int LTR ERVK -2947 3190 2946 2 994 641 227 59 108 chr3 53677372 53677716 -105922067 - RLTR42-int LTR ERVK -3557 2580 2026 2 994 402 21 0 0 chr3 53677723 53677770 -105922013 + (TCTA)n Simple_repeat Simple_repeat 1 47 0 2 994 1012 242 99 43 chr3 53678112 53678505 -105921278 - RLTR42-int LTR ERVK -4003 1519 1105 2 994 1093 71 7 0 chr3 53679228 53679368 -105920415 + B1_Mus1 SINE Alu 8 148 0 2 994 241 163 0 0 chr3 53679369 53679418 -105920365 + A-rich Low_complexity Low_complexity 5 53 0 2 994 205 339 86 8 chr3 53679899 53680027 -105919756 - MIR SINE MIR -96 166 29 2 994 269 349 47 23 chr3 53680202 53680331 -105919452 - RLTR14 LTR ERV1 0 382 251 2 994 194 0 0 37 chr3 53680333 53680360 -105919423 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 2 994 1106 102 0 0 chr3 53680678 53680815 -105918968 + B1_Mus1 SINE Alu 1 137 -11 2 994 216 0 0 0 chr3 53680817 53680841 -105918942 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 2 994 454 314 22 7 chr3 53680860 53680998 -105918785 + ID_B1 SINE B4 78 217 -7 2 994 418 340 69 64 chr3 53681007 53681154 -105918629 + L1ME3A LINE L1 5489 5643 -519 2 994 710 294 0 31 chr3 53681154 53681347 -105918436 + B3A SINE B2 4 190 -8 2 994 580 315 111 29 chr3 53681347 53681825 -105917958 + L1ME3A LINE L1 5644 6139 -34 2 994 252 296 224 0 chr3 53681838 53681936 -105917847 + RSINE1 SINE B4 13 132 -33 2 994 823 19 19 0 chr3 53681953 53682058 -105917725 + (CA)n Simple_repeat Simple_repeat 1 107 0 2 994 24 0 0 0 chr3 53682067 53682091 -105917692 + AT_rich Low_complexity Low_complexity 1 24 0 2 994 2216 52 3 33 chr3 53682105 53682405 -105917378 - RLTR10B2 LTR ERVK -74 291 1 2 994 534 252 18 83 chr3 53684356 53684525 -105915258 + RLTR20A LTR ERVK 384 541 0 2 994 1008 241 29 41 chr3 53684737 53685053 -105914730 - RCHARR1 DNA MER1_type -22 952 641 2 994 2515 182 52 37 chr3 53685279 53685798 -105913985 - RLTR11A2 LTR ERVK 0 527 1 2 994 581 279 15 8 chr3 53687429 53687559 -105912224 - RSINE1 SINE B4 -33 132 2 2 994 338 276 89 8 chr3 53687673 53687912 -105911871 + L1MEg LINE L1 2106 2364 -4036 2 994 21 0 0 0 chr3 53688398 53688419 -105911364 + AT_rich Low_complexity Low_complexity 1 21 0 2 994 216 97 0 0 chr3 53689258 53689289 -105910494 + (T)n Simple_repeat Simple_repeat 1 31 0 2 994 23 33 0 0 chr3 53689347 53689377 -105910406 + AT_rich Low_complexity Low_complexity 1 30 0 2 994 798 203 144 0 chr3 53689621 53689808 -105909975 - B3 SINE B2 0 216 3 2 994 434 246 62 11 chr3 53690341 53690530 -105909253 - L1M5 LINE L1 -296 5828 5628 2 994 297 0 0 0 chr3 53690969 53691002 -105908781 + (TC)n Simple_repeat Simple_repeat 2 34 0 2 994 195 42 0 0 chr3 53691002 53691025 -105908758 + (TG)n Simple_repeat Simple_repeat 1 24 0 2 994 296 303 144 34 chr3 53691446 53691703 -105908080 - L1MCb LINE L1 -5402 1349 961 2 994 3912 66 21 110 chr3 53691703 53692265 -105907518 + RLTR1B LTR ERV1 1 512 0 2 994 296 302 151 49 chr3 53692265 53692534 -105907249 - L1MCb LINE L1 -5085 960 678 2 994 2511 114 204 46 chr3 53692643 53693103 -105906680 + RMER16 LTR ERVK 1 533 0 2 994 207 0 0 0 chr3 53693304 53693327 -105906456 + (T)n Simple_repeat Simple_repeat 1 23 0 2 994 23 0 0 0 chr3 53694018 53694041 -105905742 + AT_rich Low_complexity Low_complexity 1 23 0 2 994 182 264 0 132 chr3 53694601 53694684 -105905099 + L2a LINE L2 3343 3414 -12 2 994 235 330 132 43 chr3 53694781 53695015 -105904768 - MIRb SINE MIR -1 267 13 2 994 7165 1 0 0 chr3 53695532 53696273 -105903510 - L1Md_A LINE L1 0 6582 5842 2 994 7791 2 0 0 chr3 53696273 53697124 -105902659 + L1Md_A LINE L1 4981 5831 -52 2 994 256 243 0 101 chr3 53697897 53698066 -105901717 + (GGGTG)n Simple_repeat Simple_repeat 4 155 0 2 994 242 258 23 58 chr3 53698142 53698315 -105901468 + (GGGTG)n Simple_repeat Simple_repeat 5 171 0 2 994 302 169 0 15 chr3 53698542 53698608 -105901175 + GA-rich Low_complexity Low_complexity 4 68 0 2 994 207 0 0 0 chr3 53700857 53700880 -105898903 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2 994 1024 77 100 0 chr3 53700880 53701010 -105898773 - B1_Mus2 SINE Alu -3 144 2 3 994 819 179 243 0 chr3 53701041 53701214 -105898569 - B3 SINE B2 -1 215 1 3 994 218 81 27 0 chr3 53701397 53701434 -105898349 + (TG)n Simple_repeat Simple_repeat 1 38 0 3 994 183 80 0 0 chr3 53701451 53701476 -105898307 + (TTG)n Simple_repeat Simple_repeat 2 26 0 3 994 551 254 54 0 chr3 53701476 53701606 -105898177 - B1_Mur1 SINE Alu -11 138 2 3 994 1243 178 12 28 chr3 53703328 53703582 -105896201 - Lx4B LINE L1 -77 6981 6732 3 994 219 154 0 0 chr3 53703647 53703686 -105896097 + A-rich Low_complexity Low_complexity 1 39 0 3 994 307 270 101 35 chr3 53703694 53703863 -105895920 - L1M4 LINE L1 -1609 4537 4358 3 994 332 264 54 11 chr3 53703904 53703996 -105895787 - MT2A LTR ERVL -401 132 37 3 994 1593 277 94 52 chr3 53704091 53705048 -105894735 - L1MA9 LINE L1 -1 6311 5318 3 994 1033 246 23 14 chr3 53705048 53705262 -105894521 - B3 SINE B2 0 216 1 3 994 280 324 117 75 chr3 53705262 53705319 -105894464 - L1MA9 LINE L1 -848 5330 5270 3 994 877 278 50 82 chr3 53705431 53705850 -105893933 - L1MA9 LINE L1 -1843 4297 3900 3 994 1217 88 0 0 chr3 53705850 53705998 -105893785 - B1_Mus1 SINE Alu 0 148 1 3 994 877 278 50 82 chr3 53705998 53706154 -105893629 - L1MA9 LINE L1 -2241 3899 3740 3 994 406 343 69 25 chr3 53706154 53706357 -105893426 + Tigger5 DNA MER2_type 1 212 -2194 3 994 326 313 78 14 chr3 53706510 53706727 -105893056 - L1MA9 LINE L1 -2425 3715 3485 3 994 354 155 17 0 chr3 53707273 53707331 -105892452 + MTC LTR MaLR 60 118 -303 3 994 223 231 0 0 chr3 53707356 53707395 -105892388 + (CGTG)n Simple_repeat Simple_repeat 1 39 0 3 994 706 133 182 0 chr3 53707449 53707614 -105892169 - Lx9 LINE L1 -2 7642 7448 3 994 2027 218 69 5 chr3 53707613 53708061 -105891722 + Lx9 LINE L1 6864 7340 -304 3 994 770 263 96 19 chr3 53708113 53708531 -105891252 - L1MA9 LINE L1 -2650 3493 3044 3 994 2320 177 47 7 chr3 53708533 53708938 -105890845 + MTC LTR MaLR 1 421 0 3 994 1523 195 46 59 chr3 53708942 53708962 -105890821 + MTC-int LTR MaLR 5 24 -1234 3 994 1592 163 10 205 chr3 53708962 53709371 -105890412 - ORR1A4 LTR MaLR 0 329 1 3 994 1523 201 56 65 chr3 53709371 53709799 -105889984 + MTC-int LTR MaLR 25 523 -575 3 994 3387 191 139 29 chr3 53710240 53710813 -105888970 + MTC-int LTR MaLR 350 1001 -257 3 994 252 0 0 0 chr3 53710813 53710841 -105888942 + (TTA)n Simple_repeat Simple_repeat 3 30 0 3 994 3387 191 139 29 chr3 53710841 53711086 -105888697 + MTC-int LTR MaLR 1002 1257 -1 3 994 816 211 44 29 chr3 53711092 53711297 -105888486 + MTC LTR MaLR 7 214 -207 3 994 1949 132 13 108 chr3 53711305 53711695 -105888088 + ORR1B1 LTR MaLR 41 393 -1 3 994 933 209 19 28 chr3 53711695 53711896 -105887887 + MTC LTR MaLR 214 412 -9 3 994 274 296 72 30 chr3 53712041 53712208 -105887575 - L1MCa LINE L1 -5354 1397 1224 3 994 2338 132 85 3 chr3 53712209 53712573 -105887210 + ORR1B1 LTR MaLR 1 394 0 3 994 240 289 13 0 chr3 53712588 53712664 -105887119 - L1MCa LINE L1 -4992 1053 977 3 994 251 283 245 0 chr3 53712717 53712823 -105886960 - B3A SINE B2 -66 132 1 3 994 244 302 85 0 chr3 53712843 53712949 -105886834 - L1MCa LINE L1 -5725 1026 912 3 994 657 25 0 0 chr3 53712953 53713032 -105886751 + (GA)n Simple_repeat Simple_repeat 2 80 0 3 994 3249 58 15 2 chr3 53713139 53713534 -105886249 - MTB LTR MaLR 0 400 1 3 994 24 53 0 0 chr3 53713544 53713582 -105886201 + AT_rich Low_complexity Low_complexity 1 38 0 3 994 306 332 86 45 chr3 53714880 53715322 -105884461 - L1M5 LINE L1 -355 5818 5359 3 994 248 241 134 54 chr3 53715886 53716035 -105883748 - L1M5 LINE L1 -3296 2850 2690 3 994 21 0 0 0 chr3 53716049 53716070 -105883713 + AT_rich Low_complexity Low_complexity 1 21 0 3 994 279 257 27 18 chr3 53716111 53716222 -105883561 + (TATG)n Simple_repeat Simple_repeat 2 113 0 3 994 427 187 35 12 chr3 53716234 53716407 -105883376 + (TA)n Simple_repeat Simple_repeat 1 177 0 3 994 291 351 96 7 chr3 53716407 53716835 -105882948 - L1M5 LINE L1 -3542 2604 2139 3 994 31 44 0 0 chr3 53716851 53716896 -105882887 + AT_rich Low_complexity Low_complexity 1 45 0 3 994 279 0 0 0 chr3 53716942 53716973 -105882810 + (TC)n Simple_repeat Simple_repeat 2 32 0 3 994 315 0 0 0 chr3 53716973 53717007 -105882776 + (TG)n Simple_repeat Simple_repeat 2 36 0 3 994 472 314 121 23 chr3 53717030 53717245 -105882538 - B4A SINE B4 -23 269 34 3 994 21 0 0 0 chr3 53717272 53717293 -105882490 + AT_rich Low_complexity Low_complexity 1 21 0 3 994 2004 119 6 59 chr3 53718189 53718527 -105881256 - ORR1A4 LTR MaLR -8 321 2 3 994 1232 291 104 35 chr3 53718746 53719266 -105880517 - Lx8 LINE L1 -282 7191 6636 3 994 28 48 0 0 chr3 53719389 53719431 -105880352 + AT_rich Low_complexity Low_complexity 1 42 0 3 994 689 233 124 12 chr3 53720142 53720303 -105879480 - B3A SINE B2 -17 181 3 3 994 2767 71 8 32 chr3 53722182 53722561 -105877222 + Lx LINE L1 6285 6654 0 3 994 327 288 80 9 chr3 53722681 53722793 -105876990 + B4A SINE B4 14 133 -159 3 994 205 299 0 38 chr3 53722958 53723038 -105876745 + CT-rich Low_complexity Low_complexity 2 78 0 3 994 1110 226 30 5 chr3 53723210 53723410 -105876373 - B3 SINE B2 -7 209 5 3 994 208 250 0 0 chr3 53724908 53724964 -105874819 + A-rich Low_complexity Low_complexity 1 56 0 3 994 715 64 0 0 chr3 53725364 53725458 -105874325 + B1_Mm SINE Alu 54 147 0 3 994 315 0 0 0 chr3 53726297 53726332 -105873451 + (CA)n Simple_repeat Simple_repeat 1 35 0 3 994 387 118 0 0 chr3 53726777 53726853 -105872930 + (T)n Simple_repeat Simple_repeat 1 76 0 3 994 335 268 114 18 chr3 53727494 53727608 -105872175 - RMER15 LTR ERVL -152 423 299 3 994 194 342 0 52 chr3 53727747 53727824 -105871959 - MIR3 SINE MIR -23 185 113 3 994 303 384 90 14 chr3 53728001 53728223 -105871560 + Tigger7 DNA MER2_type 67 305 -2186 3 994 933 254 121 66 chr3 53728369 53728748 -105871035 - MTD LTR MaLR -15 404 5 3 994 419 246 235 0 chr3 53728751 53728930 -105870853 + Tigger7 DNA MER2_type 2265 2485 -6 3 994 790 62 9 9 chr3 53728997 53729111 -105870672 + (TTCC)n Simple_repeat Simple_repeat 3 116 0 3 994 854 298 95 40 chr3 53729147 53729570 -105870213 + MLT1D LTR MaLR 44 489 -16 3 994 195 351 53 11 chr3 53729674 53729769 -105870014 + MIR SINE MIR 28 126 -136 3 994 22 56 0 0 chr3 53729960 53729996 -105869787 + AT_rich Low_complexity Low_complexity 1 36 0 3 994 5032 156 159 78 chr3 53730293 53731516 -105868267 + RMER12 LTR ERVK 1 1322 0 3 994 296 315 94 0 chr3 53732091 53732218 -105867565 - Lx8 LINE L1 -332 7141 7003 3 994 289 278 22 0 chr3 53732265 53732355 -105867428 + L1MC3 LINE L1 7442 7533 -252 3 994 604 263 8 0 chr3 53732420 53732538 -105867245 + RSINE1 SINE B4 1 119 -46 3 994 288 69 0 17 chr3 53732532 53732591 -105867192 - B2_Mm2 SINE B2 -1 194 137 3 994 845 118 236 0 chr3 53732698 53732842 -105866941 - B2_Mm1t SINE B2 -14 179 2 3 994 210 105 0 0 chr3 53732858 53732896 -105866887 + (CA)n Simple_repeat Simple_repeat 2 39 0 3 994 3213 48 0 3 chr3 53733702 53734060 -105865723 + IAPEY2_LTR LTR ERVK 1 357 0 3 994 295 300 43 22 chr3 53734848 53734940 -105864843 - ID_B1 SINE B4 -124 100 7 3 994 291 352 228 27 chr3 53737022 53737276 -105862507 - MLT1H LTR MaLR -46 503 199 3 994 474 98 0 0 chr3 53737579 53737661 -105862122 + (TC)n Simple_repeat Simple_repeat 1 82 0 3 994 184 307 26 129 chr3 53737661 53737777 -105862006 + L2c LINE L2 3256 3359 -28 3 994 529 234 79 36 chr3 53739119 53739282 -105860501 - B3 SINE B2 -3 190 27 3 994 1349 104 33 0 chr3 53739305 53739488 -105860295 - B2_Mm1t SINE B2 -3 190 2 3 995 300 27 0 0 chr3 53739980 53740017 -105859766 + (CA)n Simple_repeat Simple_repeat 2 38 0 3 995 355 250 244 25 chr3 53741457 53741706 -105858077 + Lx8 LINE L1 7169 7471 -2 3 995 385 277 0 0 chr3 53741721 53741822 -105857961 + Lx8 LINE L1 7147 7247 -226 3 995 297 0 0 0 chr3 53742264 53742297 -105857486 + (TG)n Simple_repeat Simple_repeat 1 33 0 3 995 661 316 65 16 chr3 53742341 53742662 -105857121 - Kanga11a DNA Tc2 -401 569 233 3 995 228 308 93 37 chr3 53742804 53742912 -105856871 - MER91A DNA Tip100 -13 183 70 3 995 600 257 129 10 chr3 53744570 53744763 -105855020 - Lx8 LINE L1 -832 6641 6426 3 995 324 0 0 0 chr3 53745223 53745259 -105854524 + (CA)n Simple_repeat Simple_repeat 1 36 0 3 995 325 277 90 25 chr3 53745260 53745382 -105854401 + RSINE1 SINE B4 33 162 -3 3 995 498 75 0 0 chr3 53746286 53746353 -105853430 + (TCTA)n Simple_repeat Simple_repeat 4 70 0 3 995 180 0 0 0 chr3 53746499 53746519 -105853264 + (CAA)n Simple_repeat Simple_repeat 2 21 0 3 995 1742 128 86 13 chr3 53746975 53747277 -105852506 - IAPLTR4 LTR ERVK -21 324 1 3 995 21 36 0 0 chr3 53747560 53747588 -105852195 + AT_rich Low_complexity Low_complexity 1 28 0 3 995 2520 74 6 63 chr3 53747818 53748165 -105851618 - ORR1A2 LTR MaLR 0 327 1 3 995 350 264 112 31 chr3 53748889 53749148 -105850635 - L1ME2 LINE L1 -192 5972 5688 3 995 1980 175 38 14 chr3 53749161 53749526 -105850257 - ORR1D1 LTR MaLR 0 374 1 3 995 270 0 0 0 chr3 53749996 53750026 -105849757 + (TGG)n Simple_repeat Simple_repeat 3 32 0 3 995 396 238 181 114 chr3 53750026 53750192 -105849591 - B3A SINE B2 -18 180 4 3 995 246 295 13 0 chr3 53752165 53752243 -105847540 - L1MC3 LINE L1 -250 7535 7457 3 995 371 338 21 0 chr3 53752301 53752443 -105847340 + Lx8 LINE L1 6997 7141 -332 3 995 241 209 81 0 chr3 53752604 53752690 -105847093 - L1MA6 LINE L1 -105 6195 6103 3 995 691 319 60 39 chr3 53752684 53753167 -105846616 - L1MC3 LINE L1 -399 7386 6894 3 995 480 206 0 0 chr3 53753257 53753388 -105846395 + (TG)n Simple_repeat Simple_repeat 2 132 0 3 995 187 120 56 74 chr3 53753872 53753926 -105845857 + MIRm SINE MIR 140 192 -84 3 995 7878 178 73 32 chr3 53754607 53755104 -105844679 - RLTR22_Mur LTR ERVK -2 1846 1349 3 995 333 0 0 0 chr3 53755104 53755141 -105844642 + (CA)n Simple_repeat Simple_repeat 2 38 0 3 995 7878 178 73 32 chr3 53755141 53756254 -105843529 - RLTR22_Mur LTR ERVK -500 1348 160 3 995 504 0 0 0 chr3 53756254 53756310 -105843473 + (TG)n Simple_repeat Simple_repeat 2 57 0 3 995 7878 178 73 32 chr3 53756310 53756470 -105843313 - RLTR22_Mur LTR ERVK -1689 159 4 3 995 708 198 11 35 chr3 53756790 53756964 -105842819 + Lx6 LINE L1 6761 6894 -566 3 995 1741 251 66 17 chr3 53757247 53758056 -105841727 - Lx6 LINE L1 -31 7429 6518 3 995 5090 149 33 55 chr3 53758081 53758389 -105841394 - L1_Mur3 LINE L1 -854 5026 4740 4 995 4582 49 2 15 chr3 53758389 53758930 -105840853 - L1_Mus1 LINE L1 0 6567 6034 4 995 5090 149 33 55 chr3 53758930 53759678 -105840105 - L1_Mur3 LINE L1 -1141 4739 3993 4 995 246 128 0 0 chr3 53759678 53759717 -105840066 - B3 SINE B2 -175 41 3 4 995 181 345 80 23 chr3 53760069 53760244 -105839539 - L3 LINE CR1 -3401 1088 904 4 995 849 279 46 115 chr3 53760734 53761107 -105838676 + ORR1E LTR MaLR 1 347 -12 4 995 210 298 52 21 chr3 53761434 53761530 -105838253 + MIR SINE MIR 84 182 -80 4 995 351 349 54 49 chr3 53762062 53762246 -105837537 + MER58A DNA MER1_type 1 185 -39 4 995 287 25 0 24 chr3 53762587 53762628 -105837155 + (CAAAA)n Simple_repeat Simple_repeat 2 41 0 4 995 527 328 78 32 chr3 53763499 53763998 -105835785 + MLT1E2 LTR MaLR 105 639 -15 4 995 196 294 29 0 chr3 53764049 53764117 -105835666 + L2c LINE L2 3089 3158 -229 4 995 924 36 0 0 chr3 53764140 53764252 -105835531 + (TC)n Simple_repeat Simple_repeat 1 112 0 4 995 666 145 0 38 chr3 53764854 53765040 -105834743 + (CA)n Simple_repeat Simple_repeat 2 180 0 4 995 552 211 9 9 chr3 53765053 53765388 -105834395 + (CA)n Simple_repeat Simple_repeat 1 335 0 4 995 1198 176 78 0 chr3 53766268 53766473 -105833310 - URR1A DNA MER1_type -1 225 5 4 995 883 309 147 24 chr3 53767034 53767654 -105832129 + L1MB4 LINE L1 89 784 -5823 4 995 373 329 52 45 chr3 53767658 53767945 -105831838 + L1MB4 LINE L1 5513 5801 -946 4 995 663 277 28 0 chr3 53767948 53768089 -105831694 + RSINE1 SINE B4 4 148 -17 4 995 316 132 23 35 chr3 53768115 53768201 -105831582 + (TATATG)n Simple_repeat Simple_repeat 6 90 0 4 995 202 191 42 42 chr3 53769667 53769738 -105830045 + (CATA)n Simple_repeat Simple_repeat 2 72 0 4 995 300 53 0 0 chr3 53771979 53772017 -105827766 + (TC)n Simple_repeat Simple_repeat 1 38 0 4 995 244 119 48 0 chr3 53772053 53772095 -105827688 - L1MA6 LINE L1 -364 5936 5893 4 995 219 339 130 30 chr3 53772445 53772576 -105827207 - MIRb SINE MIR -75 193 50 4 995 348 24 0 0 chr3 53773696 53773737 -105826046 + (TTA)n Simple_repeat Simple_repeat 3 43 0 4 995 2001 84 10 50 chr3 53773737 53774037 -105825746 - L1_Mus3 LINE L1 -19 6619 6332 4 995 928 305 26 55 chr3 53774195 53774606 -105825177 + MTE2a LTR MaLR 3 405 -14 4 995 244 364 0 33 chr3 53774632 53774723 -105825060 + RSINE1 SINE B4 57 144 -21 4 995 270 291 12 71 chr3 53775938 53776023 -105823760 + RSINE1 SINE B4 86 165 0 4 995 281 370 33 27 chr3 53776041 53776191 -105823592 + RSINE1 SINE B4 1 151 -14 4 995 249 48 95 0 chr3 53776235 53776277 -105823506 + (CAGAGA)n Simple_repeat Simple_repeat 3 48 0 4 995 429 184 0 32 chr3 53776278 53776463 -105823320 + (CAGA)n Simple_repeat Simple_repeat 2 180 0 4 995 234 91 0 0 chr3 53776902 53776935 -105822848 + (TC)n Simple_repeat Simple_repeat 2 34 0 4 995 302 313 167 8 chr3 53778044 53778176 -105821607 + RSINE1 SINE B4 1 153 -12 4 995 194 295 151 32 chr3 53779130 53779256 -105820527 + L2b LINE L2 3230 3370 -5 4 995 26 0 0 0 chr3 53779757 53779783 -105820000 + AT_rich Low_complexity Low_complexity 1 26 0 4 995 428 290 14 7 chr3 53780262 53780315 -105819468 - Lx7 LINE L1 -1004 6692 6638 4 995 189 74 0 0 chr3 53780315 53780342 -105819441 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 4 995 428 290 14 7 chr3 53780342 53780427 -105819356 - Lx7 LINE L1 -1059 6637 6553 4 995 25 31 0 0 chr3 53780431 53780463 -105819320 + AT_rich Low_complexity Low_complexity 1 32 0 4 995 306 0 0 0 chr3 53780507 53780541 -105819242 + (TG)n Simple_repeat Simple_repeat 1 34 0 4 995 351 0 0 0 chr3 53780541 53780579 -105819204 + (GA)n Simple_repeat Simple_repeat 1 39 0 4 995 308 260 19 19 chr3 53780579 53780685 -105819098 + Lx7 LINE L1 7591 7696 0 4 995 244 341 33 0 chr3 53781378 53781469 -105818314 + MTEa LTR MaLR 15 108 -271 4 995 591 15 0 0 chr3 53782301 53782369 -105817414 + (TCTA)n Simple_repeat Simple_repeat 1 68 0 4 995 280 369 62 49 chr3 53782504 53782729 -105817054 + MLT1J2 LTR MaLR 9 236 -212 4 995 244 393 83 45 chr3 53783029 53783317 -105816466 + MLT1J2-int LTR MaLR 79 377 -1010 4 995 288 0 0 0 chr3 53784457 53784489 -105815294 + (TG)n Simple_repeat Simple_repeat 2 33 0 4 995 217 254 18 0 chr3 53784734 53784789 -105814994 + CT-rich Low_complexity Low_complexity 1 56 0 4 995 444 215 93 9 chr3 53784801 53784909 -105814874 - ID_B1 SINE B4 -28 196 80 4 995 233 211 36 55 chr3 53785460 53785515 -105814268 + MLT2C2 LTR ERVL 217 270 -194 4 995 1176 68 0 7 chr3 53786001 53786149 -105813634 + B1_Mus2 SINE Alu 1 147 0 4 995 207 0 0 0 chr3 53786149 53786172 -105813611 + (A)n Simple_repeat Simple_repeat 1 23 0 4 995 1875 131 24 56 chr3 53786321 53786662 -105813121 - ORR1B1 LTR MaLR -24 370 41 4 995 783 180 99 0 chr3 53786843 53787004 -105812779 + B3 SINE B2 32 208 -8 4 995 1158 99 3 12 chr3 53787086 53787276 -105812507 + B2_Mm2 SINE B2 9 193 0 4 995 1570 180 26 15 chr3 53787366 53787687 -105812096 - ORR1D1 LTR MaLR 0 384 61 4 995 1344 97 60 5 chr3 53787711 53787928 -105811855 - Lx LINE L1 0 6654 6426 4 995 310 314 49 8 chr3 53788121 53788243 -105811540 + B1F SINE Alu 22 148 -1 4 995 240 318 15 0 chr3 53788243 53788309 -105811474 + ID4_ SINE ID 4 70 -13 4 995 1716 305 54 32 chr3 53789267 53790080 -105809703 + Lx8 LINE L1 6467 7322 -151 4 995 258 32 0 0 chr3 53790080 53790111 -105809672 + (CA)n Simple_repeat Simple_repeat 2 32 0 4 995 1716 293 52 33 chr3 53790111 53790239 -105809544 + Lx8 LINE L1 7323 7462 -11 4 995 360 319 21 0 chr3 53790317 53790330 -105809453 - ID_B1 SINE B4 -128 96 1 4 995 399 259 0 0 chr3 53790330 53790411 -105809372 - ID4_ SINE ID -2 81 1 4 995 23 54 0 0 chr3 53793591 53793628 -105806155 + AT_rich Low_complexity Low_complexity 1 37 0 4 995 473 328 56 13 chr3 53795142 53795374 -105804409 + L1MEc LINE L1 421 662 -5738 4 995 258 287 127 0 chr3 53795385 53795535 -105804248 + L1MEc LINE L1 717 885 -5515 4 995 205 280 0 0 chr3 53795775 53795796 -105803987 + polypurine Low_complexity Low_complexity 3 23 0 4 995 1116 124 0 0 chr3 53795796 53795974 -105803809 + (GGA)n Simple_repeat Simple_repeat 3 180 0 4 995 205 280 0 0 chr3 53795974 53796002 -105803781 + polypurine Low_complexity Low_complexity 24 51 0 4 995 1233 179 49 199 chr3 53796493 53796945 -105802838 - ORR1C2 LTR MaLR 0 384 1 4 995 764 250 29 24 chr3 53796985 53797194 -105802589 + B3 SINE B2 1 210 -6 4 995 1747 141 18 75 chr3 53797976 53798361 -105801422 + RLTR11B LTR ERVK 91 453 0 4 995 918 200 44 29 chr3 53799554 53799760 -105800023 + ID_B1 SINE B4 4 212 -12 4 995 843 162 6 16 chr3 53799771 53799953 -105799830 + CT-rich Low_complexity Low_complexity 1 180 0 4 995 349 331 29 17 chr3 53800091 53800266 -105799517 + (TATG)n Simple_repeat Simple_repeat 4 180 0 4 995 190 0 67 0 chr3 53801406 53801436 -105798347 + (CAA)n Simple_repeat Simple_repeat 2 33 0 4 995 304 253 0 24 chr3 53802068 53802153 -105797630 + (TATG)n Simple_repeat Simple_repeat 2 84 0 4 995 26 0 0 0 chr3 53803072 53803098 -105796685 + AT_rich Low_complexity Low_complexity 1 26 0 4 995 183 156 0 0 chr3 53803276 53803308 -105796475 + (TTG)n Simple_repeat Simple_repeat 1 32 0 4 995 23614 142 16 10 chr3 53803308 53807577 -105792206 - L1_Mus3 LINE L1 0 6638 2366 4 995 225 0 0 0 chr3 53807577 53807602 -105792181 + (TTTA)n Simple_repeat Simple_repeat 3 27 0 4 995 23614 138 21 7 chr3 53807602 53809347 -105790436 - L1_Mus3 LINE L1 -3521 2365 578 4 995 988 260 75 63 chr3 53809378 53809776 -105790007 - Lx8 LINE L1 -92 7381 6979 4 995 317 320 61 130 chr3 53810151 53810413 -105789370 - ORR1E LTR MaLR -17 342 99 4 995 333 304 126 6 chr3 53810586 53810745 -105789038 - HAL1 LINE L1 -2259 248 71 4 995 570 368 54 30 chr3 53811397 53811769 -105788014 - LTR40a LTR ERVL 0 519 139 4 995 23 54 0 0 chr3 53812267 53812304 -105787479 + AT_rich Low_complexity Low_complexity 1 37 0 4 995 7856 45 1 0 chr3 53812304 53813894 -105785889 - L1Md_F2 LINE L1 -13 6569 4978 4 995 27 0 0 0 chr3 53814153 53814180 -105785603 + AT_rich Low_complexity Low_complexity 1 27 0 4 995 320 226 139 57 chr3 53814705 53814827 -105784956 + ID_B1 SINE B4 86 217 -7 4 995 1694 298 62 0 chr3 53814830 53815471 -105784312 + Lx8 LINE L1 6629 7309 -164 4 995 297 0 0 0 chr3 53815536 53815569 -105784214 + (GGGTG)n Simple_repeat Simple_repeat 4 36 0 4 995 22 0 0 0 chr3 53815610 53815632 -105784151 + AT_rich Low_complexity Low_complexity 1 22 0 4 995 301 274 48 0 chr3 53815775 53815859 -105783924 - Lx8 LINE L1 -306 7167 7080 4 995 186 254 36 0 chr3 53815868 53815923 -105783860 + L2 LINE L2 2900 2956 -463 4 995 186 133 0 0 chr3 53817071 53817101 -105782682 + (TA)n Simple_repeat Simple_repeat 2 31 0 4 995 2982 119 25 2 chr3 53817104 53817552 -105782231 - RMER6B LTR ERVK -3 458 1 4 995 618 264 15 50 chr3 53817739 53818057 -105781726 - L1M1 LINE L1 -681 5616 5302 4 995 270 346 84 13 chr3 53818088 53818243 -105781540 + LTR16E1 LTR ERVL 347 512 -26 4 995 872 129 209 26 chr3 53818244 53818435 -105781348 - URR1A DNA MER1_type 0 226 1 4 995 1164 245 42 71 chr3 53818519 53819005 -105780778 + MT2B LTR ERVL 1 568 -33 4 995 200 103 51 0 chr3 53822077 53822116 -105777667 + GA-rich Low_complexity Low_complexity 1 41 0 4 995 371 286 32 55 chr3 53823653 53823716 -105776067 - L1M4 LINE L1 -768 5378 5322 4 995 1687 136 17 27 chr3 53823716 53824012 -105775771 - Lx LINE L1 -2 6652 6360 4 995 371 286 32 55 chr3 53824012 53824166 -105775617 - L1M4 LINE L1 -825 5321 5166 4 995 187 235 81 81 chr3 53824184 53824258 -105775525 - MIRm SINE MIR -159 117 44 4 995 22 35 0 0 chr3 53825042 53825071 -105774712 + AT_rich Low_complexity Low_complexity 1 29 0 4 995 183 42 0 0 chr3 53825716 53825740 -105774043 + (G)n Simple_repeat Simple_repeat 1 24 0 4 995 1802 233 145 28 chr3 53825889 53826098 -105773685 - Lx9 LINE L1 -27 7617 7370 5 995 3074 85 0 2 chr3 53826098 53826499 -105773284 + MTB LTR MaLR 1 400 0 5 995 1802 233 145 28 chr3 53826499 53826548 -105773235 - Lx9 LINE L1 -275 7369 7287 5 995 279 0 0 0 chr3 53826548 53826579 -105773204 + (TG)n Simple_repeat Simple_repeat 2 32 0 5 995 1802 233 145 28 chr3 53826579 53826955 -105772828 - Lx9 LINE L1 -358 7286 6909 5 995 1125 256 56 0 chr3 53826952 53827237 -105772546 + Lx9 LINE L1 6446 6746 -898 5 995 305 333 28 51 chr3 53827291 53827468 -105772315 - RLTR22_Mus LTR ERVK -118 1690 1518 5 995 3158 162 65 31 chr3 53827470 53828195 -105771588 - RMER12 LTR ERVK -476 846 1 5 995 655 150 78 16 chr3 53828195 53828324 -105771459 + Lx9 LINE L1 6741 6877 -767 5 995 989 235 5 138 chr3 53828923 53829230 -105770553 - MTD LTR MaLR -15 404 152 5 995 788 278 88 55 chr3 53832337 53832611 -105767172 + B4A SINE B4 2 284 -8 5 995 26 0 0 0 chr3 53834347 53834373 -105765410 + AT_rich Low_complexity Low_complexity 1 26 0 5 995 338 309 0 0 chr3 53834811 53834895 -105764888 + PB1D10 SINE Alu 26 109 -8 5 995 419 294 110 0 chr3 53835497 53835519 -105764264 - RSINE1 SINE B4 0 165 144 5 995 420 71 0 0 chr3 53835519 53835575 -105764208 + (CA)n Simple_repeat Simple_repeat 1 56 0 5 995 419 294 110 0 chr3 53835575 53835698 -105764085 - RSINE1 SINE B4 -22 143 5 5 995 1753 248 22 15 chr3 53836670 53837072 -105762711 + MTD LTR MaLR 1 405 -14 5 995 331 310 30 10 chr3 53837062 53837163 -105762620 - RSINE1 SINE B4 -58 107 5 5 995 538 152 179 0 chr3 53837430 53837542 -105762241 - RLTR15 LTR ERVK -227 132 1 5 995 274 93 56 0 chr3 53837622 53837676 -105762107 + (CAAAAA)n Simple_repeat Simple_repeat 2 58 0 5 995 333 68 0 0 chr3 53837998 53838042 -105761741 + (AGGGGG)n Simple_repeat Simple_repeat 1 44 0 5 995 320 361 95 20 chr3 53838279 53838426 -105761357 + RSINE1 SINE B4 4 161 -4 5 995 205 191 0 0 chr3 53838865 53838907 -105760876 + T-rich Low_complexity Low_complexity 2 43 0 5 995 931 67 0 0 chr3 53839172 53839291 -105760492 - L1Md_F2 LINE L1 -446 6138 6020 5 995 3566 75 9 11 chr3 53839293 53839752 -105760031 + L1Md_F2 LINE L1 6123 6580 -2 5 995 1779 242 37 7 chr3 53840002 53840406 -105759377 + MTD LTR MaLR 1 416 -3 5 995 541 294 110 18 chr3 53840838 53841001 -105758782 - B3 SINE B2 0 216 39 5 995 2147 107 6 94 chr3 53841478 53841829 -105757954 - Lx LINE L1 -1 6653 6334 5 995 3416 152 25 2 chr3 53841829 53842388 -105757395 + L1_Mur2 LINE L1 4642 5213 -664 5 995 1331 285 155 34 chr3 53843087 53843708 -105756075 + Lx8 LINE L1 5996 6691 -782 5 995 271 44 44 0 chr3 53845399 53845444 -105754339 + (CAGA)n Simple_repeat Simple_repeat 2 48 0 5 995 192 152 0 0 chr3 53845489 53845522 -105754261 + T-rich Low_complexity Low_complexity 1 33 0 5 995 1300 200 61 129 chr3 53845930 53846464 -105753319 + MT2B LTR ERVL 1 601 0 5 995 886 231 107 5 chr3 53847318 53847514 -105752269 + B3 SINE B2 1 216 0 5 995 25 0 0 0 chr3 53848100 53848125 -105751658 + AT_rich Low_complexity Low_complexity 1 25 0 5 995 8640 27 1 0 chr3 53848125 53849116 -105750667 - L1Md_T LINE L1 0 6582 5591 5 995 2433 15 0 0 chr3 53849111 53849384 -105750399 + L1Md_T LINE L1 5297 5569 -314 5 995 391 312 92 11 chr3 53849817 53849965 -105749818 - B3A SINE B2 -32 166 2 5 995 361 282 17 43 chr3 53850382 53850497 -105749286 + RSINE1 SINE B4 3 114 -51 5 995 513 0 0 0 chr3 53851095 53851152 -105748631 + (CA)n Simple_repeat Simple_repeat 2 58 0 5 995 252 0 0 0 chr3 53851152 53851179 -105748604 + (GA)n Simple_repeat Simple_repeat 2 29 0 5 995 304 186 51 0 chr3 53851715 53851774 -105748009 - B1F SINE Alu -1 148 87 5 995 1972 125 14 22 chr3 53851775 53852180 -105747603 - ORR1A2 LTR MaLR 0 394 1 5 995 352 200 13 0 chr3 53852195 53852270 -105747513 - ID_B1 SINE B4 -63 161 86 5 995 240 35 0 0 chr3 53853037 53853066 -105746717 + (CA)n Simple_repeat Simple_repeat 2 30 0 5 995 272 102 20 0 chr3 53853092 53853141 -105746642 + (CA)n Simple_repeat Simple_repeat 1 50 0 5 995 21 36 0 0 chr3 53853861 53853889 -105745894 + AT_rich Low_complexity Low_complexity 1 28 0 5 995 237 273 0 0 chr3 53854255 53854310 -105745473 - B1F1 SINE Alu -93 56 2 5 995 472 282 73 6 chr3 53855780 53855944 -105743839 + MT2A LTR ERVL 2 176 -357 5 995 380 20 20 0 chr3 53856024 53856073 -105743710 + (ATTG)n Simple_repeat Simple_repeat 3 52 0 5 995 320 202 84 75 chr3 53856084 53856191 -105743592 + MT2A LTR ERVL 332 439 -94 5 995 620 246 28 21 chr3 53856454 53856595 -105743188 + B1F2 SINE Alu 1 142 -7 5 995 1048 203 35 25 chr3 53857646 53857848 -105741935 + B3 SINE B2 2 205 -11 5 995 3560 94 58 0 chr3 53857870 53858357 -105741426 - L1_Mus4 LINE L1 -7 6629 6115 5 995 1394 266 10 19 chr3 53858357 53858771 -105741012 - L1VL4 LINE L1 -5719 583 174 5 995 317 302 23 0 chr3 53859018 53859104 -105740679 - MIR SINE MIR -116 146 59 5 995 396 59 0 0 chr3 53859231 53859282 -105740501 + (CA)n Simple_repeat Simple_repeat 1 51 0 5 995 312 325 25 0 chr3 53859884 53859964 -105739819 + B4A SINE B4 65 146 -146 5 995 481 309 26 32 chr3 53860594 53860748 -105739035 + RSINE1 SINE B4 3 155 -10 5 995 4017 60 6 4 chr3 53862615 53863099 -105736684 - L1Md_F2 LINE L1 0 6582 6098 5 995 1223 151 258 13 chr3 53864300 53864618 -105735165 + Lx9 LINE L1 7249 7644 0 5 995 242 309 38 61 chr3 53865039 53865170 -105734613 + MER20 DNA MER1_type 3 130 -89 5 995 827 282 13 18 chr3 53865426 53865650 -105734133 + ID_B1 SINE B4 2 224 0 5 995 4122 81 13 4 chr3 53866938 53867461 -105732322 + L1_Mus1 LINE L1 6040 6567 0 5 995 237 298 19 9 chr3 53867461 53867566 -105732217 + L1M3 LINE L1 3963 4068 -2072 5 995 180 0 0 0 chr3 53867567 53867587 -105732196 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 5 995 322 304 0 0 chr3 53867705 53867774 -105732009 + Lx8 LINE L1 7154 7222 -251 5 995 241 230 22 33 chr3 53868458 53868548 -105731235 + Lx6 LINE L1 7329 7417 -43 5 995 245 269 15 0 chr3 53868636 53868703 -105731080 + L1MC3 LINE L1 7366 7433 -352 5 995 333 360 40 54 chr3 53868753 53869050 -105730733 + ORR1E LTR MaLR 51 343 -16 5 995 352 313 91 9 chr3 53869116 53869348 -105730435 + L1MC3 LINE L1 7505 7755 -30 5 995 24 32 0 0 chr3 53870096 53870127 -105729656 + AT_rich Low_complexity Low_complexity 1 31 0 5 996 182 344 0 0 chr3 53870717 53870778 -105729005 - MIR3 SINE MIR -23 185 125 5 996 328 262 67 89 chr3 53871000 53871023 -105728760 + B4A SINE B4 71 165 -127 5 996 752 209 21 7 chr3 53871023 53871163 -105728620 + B1F SINE Alu 6 147 -2 5 996 328 262 67 89 chr3 53871163 53871180 -105728603 + B4A SINE B4 166 246 -46 5 996 194 91 30 0 chr3 53871180 53871213 -105728570 + (GGGA)n Simple_repeat Simple_repeat 4 37 0 5 996 376 325 130 30 chr3 53871232 53871432 -105728351 + LTR33C LTR ERVL 62 281 -348 5 996 468 299 75 79 chr3 53871452 53871714 -105728069 + ORR1E LTR MaLR 33 306 -53 5 996 377 290 104 9 chr3 53873011 53873243 -105726540 + L1MA8 LINE L1 5234 5491 -800 5 996 187 250 0 0 chr3 53873394 53873430 -105726353 + MIR SINE MIR 118 153 -55 5 996 27 62 0 0 chr3 53874027 53874075 -105725708 + AT_rich Low_complexity Low_complexity 1 48 0 5 996 774 226 14 0 chr3 53874206 53874352 -105725431 + B1_Mus1 SINE Alu 1 148 0 5 996 634 301 175 25 chr3 53874550 53875075 -105724708 + L1MA8 LINE L1 5475 6078 -213 5 996 259 361 63 38 chr3 53875383 53875622 -105724161 + L1MC4 LINE L1 6784 7028 -1014 5 996 460 190 31 0 chr3 53875692 53875791 -105723992 - RMER19A LTR ERVK -508 229 136 5 996 298 200 0 18 chr3 53875768 53875824 -105723959 + ID4 SINE ID 16 70 -13 5 996 222 171 0 0 chr3 53875829 53875870 -105723913 + (TGAA)n Simple_repeat Simple_repeat 2 42 0 5 996 390 190 87 79 chr3 53875912 53876038 -105723745 - RMER19A LTR ERVK 0 737 611 5 996 1766 238 33 179 chr3 53876055 53876880 -105722903 - RMER19A LTR ERVK 0 737 34 5 996 424 378 44 44 chr3 53877128 53877471 -105722312 + L1MEc LINE L1 114 456 -5944 5 996 258 319 35 65 chr3 53877524 53877755 -105722028 + L1MEc LINE L1 604 827 -5573 5 996 804 304 0 40 chr3 53877782 53878005 -105721778 - B3 SINE B2 -2 214 1 5 996 305 306 35 44 chr3 53878421 53878534 -105721249 - MIR SINE MIR -19 243 132 5 996 665 327 45 15 chr3 53879420 53879684 -105720099 + Lx8 LINE L1 7018 7289 -184 5 996 1956 148 132 27 chr3 53879692 53880209 -105719574 - RMER6A LTR ERVK -4 752 220 5 996 450 186 0 0 chr3 53880209 53880349 -105719434 + (TG)n Simple_repeat Simple_repeat 1 140 0 5 996 1863 137 31 25 chr3 53880349 53880672 -105719111 - RMER6A LTR ERVK -431 325 1 5 996 227 276 24 121 chr3 53880674 53880839 -105718944 + Lx8 LINE L1 7296 7444 -29 5 996 630 0 0 0 chr3 53880879 53880949 -105718834 + (GA)n Simple_repeat Simple_repeat 1 70 0 5 996 238 314 116 39 chr3 53881327 53881418 -105718365 + MLT2B3 LTR ERVL 413 514 -40 5 996 486 0 0 0 chr3 53881418 53881472 -105718311 + (CA)n Simple_repeat Simple_repeat 2 55 0 5 996 238 314 116 39 chr3 53881472 53881509 -105718274 + MLT2B3 LTR ERVL 515 551 -3 5 996 222 277 0 0 chr3 53882961 53883008 -105716775 + (TG)n Simple_repeat Simple_repeat 2 48 0 5 996 497 307 33 1 chr3 53883013 53883184 -105716599 - B4A SINE B4 -6 286 102 5 996 3630 90 10 8 chr3 53883342 53883825 -105715958 + L1_Mus4 LINE L1 6136 6619 -17 5 996 203 260 0 25 chr3 53884219 53884242 -105715541 + A-rich Low_complexity Low_complexity 1 23 0 5 996 198 0 0 0 chr3 53884242 53884264 -105715519 + (CAA)n Simple_repeat Simple_repeat 2 23 0 5 996 203 260 0 25 chr3 53884264 53884319 -105715464 + A-rich Low_complexity Low_complexity 24 76 0 5 996 376 270 6 46 chr3 53884864 53885021 -105714762 - B4A SINE B4 -147 145 1 5 996 402 273 84 77 chr3 53885029 53885172 -105714611 - ID_B1 SINE B4 0 224 81 5 996 417 39 0 0 chr3 53886535 53886586 -105713197 + (TC)n Simple_repeat Simple_repeat 2 52 0 5 996 790 176 7 3 chr3 53886613 53886902 -105712881 + (TG)n Simple_repeat Simple_repeat 1 290 0 5 996 672 24 0 0 chr3 53888041 53888123 -105711660 + (GA)n Simple_repeat Simple_repeat 1 82 0 5 996 234 237 98 118 chr3 53888397 53888550 -105711233 + B4A SINE B4 1 150 -142 5 996 220 271 0 28 chr3 53888569 53888641 -105711142 + (CA)n Simple_repeat Simple_repeat 1 70 0 6 996 247 321 0 23 chr3 53890164 53890250 -105709533 - PB1D10 SINE Alu -33 84 1 6 996 3292 43 84 0 chr3 53890694 53891085 -105708698 + L1_Mus1 LINE L1 6144 6567 0 6 996 1117 163 16 0 chr3 53891390 53891574 -105708209 + URR1B DNA MER1_type 39 225 0 6 996 3720 15 5 0 chr3 53891709 53892103 -105707680 + MTA_Mm LTR MaLR 1 396 0 6 996 235 143 0 56 chr3 53892576 53892665 -105707118 + A-rich Low_complexity Low_complexity 2 85 0 6 996 3359 62 10 2 chr3 53894617 53895019 -105704764 - MTB_Mm LTR MaLR -2 405 1 6 996 24 32 0 0 chr3 53895275 53895306 -105704477 + AT_rich Low_complexity Low_complexity 1 31 0 6 996 214 260 41 0 chr3 53895603 53895676 -105704107 + GA-rich Low_complexity Low_complexity 5 80 0 6 996 628 318 110 12 chr3 53896835 53897163 -105702620 + MLT1A0 LTR MaLR 6 365 0 6 996 285 125 0 0 chr3 53898360 53898416 -105701367 + (T)n Simple_repeat Simple_repeat 1 56 0 6 996 700 250 41 15 chr3 53899137 53899332 -105700451 - MTEa LTR MaLR -4 375 176 6 996 1033 40 0 0 chr3 53899316 53899441 -105700342 + B1_Mus2 SINE Alu 10 134 -13 6 996 203 197 49 0 chr3 53899480 53899541 -105700242 + CT-rich Low_complexity Low_complexity 3 66 0 6 996 649 240 27 0 chr3 53899677 53899823 -105699960 + B3A SINE B2 47 196 -2 6 996 1217 62 0 33 chr3 53900102 53900253 -105699530 + B1_Mus2 SINE Alu 2 147 0 6 996 892 229 62 0 chr3 53900257 53900449 -105699334 + B3 SINE B2 3 206 -10 6 996 222 37 0 0 chr3 53900535 53900562 -105699221 + (TTTTG)n Simple_repeat Simple_repeat 1 27 0 6 996 756 289 11 0 chr3 53900563 53900743 -105699040 - B3A SINE B2 -16 182 1 6 996 639 242 0 8 chr3 53901123 53901256 -105698527 + B1_Mus2 SINE Alu 4 135 -12 6 996 373 323 55 37 chr3 53902696 53902853 -105696930 - MER47B DNA MER2_type -174 244 85 6 996 1225 279 59 33 chr3 53902853 53903243 -105696540 - MTD LTR MaLR 0 419 20 6 996 311 146 77 0 chr3 53903537 53903667 -105696116 + (TA)n Simple_repeat Simple_repeat 2 141 0 6 996 3316 36 8 5 chr3 53904213 53904599 -105695184 - L1Md_F3 LINE L1 0 6584 6198 6 996 1720 126 87 186 chr3 53904811 53905338 -105694445 + IAPLTR2_Mm LTR ERVK 1 475 0 6 996 1299 258 91 6 chr3 53905859 53906221 -105693562 + MTD LTR MaLR 5 397 -22 6 996 1561 187 107 0 chr3 53906213 53906512 -105693271 - MTC LTR MaLR -89 332 2 6 996 260 194 38 41 chr3 53906512 53906567 -105693216 + MTD LTR MaLR 339 405 -14 6 996 450 0 0 0 chr3 53906635 53906685 -105693098 + (A)n Simple_repeat Simple_repeat 1 50 0 6 996 343 330 189 10 chr3 53907055 53907346 -105692437 - L2 LINE L2 -1364 2055 1713 6 996 344 155 0 14 chr3 53907346 53907418 -105692365 + G-rich Low_complexity Low_complexity 1 71 0 6 996 1311 48 0 0 chr3 53907741 53907887 -105691896 + B1_Mus1 SINE Alu 1 146 -2 6 996 190 348 19 90 chr3 53908130 53908285 -105691498 - MIR SINE MIR -3 259 116 6 996 359 169 0 33 chr3 53908457 53908518 -105691265 + B1_Mur4 SINE Alu 2 60 -90 6 996 294 0 0 160 chr3 53908519 53908669 -105691114 + (CAGAG)n Simple_repeat Simple_repeat 5 130 0 6 996 415 196 30 20 chr3 53908672 53908771 -105691012 + B1_Mm SINE Alu 42 141 -6 6 996 580 0 9 65 chr3 53908774 53908881 -105690902 + (GAGAA)n Simple_repeat Simple_repeat 5 105 0 6 996 1098 254 129 22 chr3 53908916 53909279 -105690504 + MTD LTR MaLR 18 419 0 6 996 324 280 0 0 chr3 53909466 53909541 -105690242 - MIRb SINE MIR -13 255 181 6 996 230 348 96 0 chr3 53909974 53910089 -105689694 - L1_Rod LINE L1 -162 5685 5560 6 996 533 254 39 0 chr3 53910092 53910252 -105689531 + Lx8 LINE L1 5669 5867 -1606 6 996 180 0 0 0 chr3 53910252 53910272 -105689511 + (TC)n Simple_repeat Simple_repeat 1 20 0 6 996 423 0 0 0 chr3 53910272 53910318 -105689465 + (CA)n Simple_repeat Simple_repeat 1 47 0 6 996 295 315 100 32 chr3 53910318 53910346 -105689437 + Lx8 LINE L1 5868 5904 -1569 6 996 414 0 0 0 chr3 53910741 53910787 -105688996 + (TG)n Simple_repeat Simple_repeat 2 47 0 6 996 615 327 80 10 chr3 53910886 53911186 -105688597 - MER2 DNA MER2_type 0 345 25 6 996 315 262 78 23 chr3 53912161 53912290 -105687493 - HAL1-3A_ME LINE L1 -747 2111 1976 6 996 688 74 9 9 chr3 53912311 53912420 -105687363 + (TC)n Simple_repeat Simple_repeat 2 110 0 6 996 311 179 15 0 chr3 53912422 53912489 -105687294 + C-rich Low_complexity Low_complexity 4 71 0 6 996 228 333 43 0 chr3 53912507 53912600 -105687183 - Lx8 LINE L1 -195 7278 7182 6 996 720 315 77 27 chr3 53912592 53912928 -105686855 + Lx8 LINE L1 6828 7180 -293 6 996 27 49 0 0 chr3 53912969 53913010 -105686773 + AT_rich Low_complexity Low_complexity 1 41 0 6 996 603 253 48 7 chr3 53913041 53913188 -105686595 - RSINE1 SINE B4 -9 156 4 6 996 263 250 0 0 chr3 53914852 53914920 -105684863 - L1MD2 LINE L1 0 6359 6292 6 996 336 278 104 0 chr3 53914935 53915050 -105684733 + L1M4b LINE L1 24 150 -7184 6 996 235 316 97 97 chr3 53915363 53915591 -105684192 + L1M4b LINE L1 543 770 -6564 6 996 308 298 149 0 chr3 53915741 53915902 -105683881 - MLT1A1 LTR MaLR -223 185 1 6 996 23 0 0 0 chr3 53915903 53915926 -105683857 + AT_rich Low_complexity Low_complexity 1 23 0 6 996 1213 254 39 20 chr3 53916378 53916726 -105683057 + MTD LTR MaLR 41 379 0 6 996 3412 58 2 2 chr3 53917482 53917878 -105681905 + MTA_Mm LTR MaLR 1 396 0 6 996 324 0 0 0 chr3 53918499 53918535 -105681248 + (TG)n Simple_repeat Simple_repeat 2 37 0 6 996 408 307 17 17 chr3 53918541 53918657 -105681126 - B1F SINE Alu -28 121 6 6 996 1250 143 71 0 chr3 53919681 53919891 -105679892 + URR1B DNA MER1_type 1 225 0 6 996 281 291 108 82 chr3 53920002 53920241 -105679542 + MTEb LTR MaLR 94 359 -20 6 996 220 302 50 40 chr3 53920269 53920369 -105679414 + L2b LINE L2 3270 3370 -5 6 996 279 344 94 36 chr3 53920751 53921080 -105678703 - L1MDa LINE L1 -6154 479 132 6 996 441 0 0 0 chr3 53921392 53921441 -105678342 + (CA)n Simple_repeat Simple_repeat 2 50 0 6 996 996 256 16 32 chr3 53921456 53921706 -105678077 + Lx8 LINE L1 6192 6437 -1036 6 996 911 280 29 55 chr3 53921731 53922003 -105677780 + Lx8 LINE L1 6572 6836 -637 6 996 255 266 73 0 chr3 53922030 53922139 -105677644 + Tigger6b DNA MER2_type 1337 1453 -144 6 996 7840 154 31 18 chr3 53922139 53923588 -105676195 + L1_Mur3 LINE L1 3720 5187 -693 6 996 534 212 108 34 chr3 53923591 53923622 -105676161 - Lx6 LINE L1 -119 7577 7547 6 996 633 80 0 0 chr3 53923622 53923710 -105676073 + (TAAAA)n Simple_repeat Simple_repeat 3 90 0 6 996 3214 216 144 16 chr3 53923710 53924154 -105675629 - Lx6 LINE L1 -150 7546 6744 6 996 207 0 0 0 chr3 53924154 53924177 -105675606 + (TTTG)n Simple_repeat Simple_repeat 4 26 0 6 996 3214 218 162 8 chr3 53924177 53924565 -105675218 - Lx6 LINE L1 -717 6743 6318 6 996 1462 177 6 22 chr3 53924572 53924896 -105674887 - L1_Mur3 LINE L1 -2596 3284 2966 6 996 255 282 34 45 chr3 53925097 53925186 -105674597 - B3A SINE B2 -105 93 6 6 996 537 190 0 48 chr3 53926117 53926305 -105673478 + (TA)n Simple_repeat Simple_repeat 2 180 0 6 996 38766 44 0 3 chr3 53926595 53932997 -105666786 - L1Md_T LINE L1 0 6585 102 6 996 861 267 61 102 chr3 53932997 53933053 -105666730 - MTE2b LTR MaLR -3 376 317 6 996 342 0 0 0 chr3 53933053 53933091 -105666692 + (GGGA)n Simple_repeat Simple_repeat 2 39 0 6 996 861 267 61 102 chr3 53933091 53933426 -105666357 - MTE2b LTR MaLR -63 316 2 6 996 23 33 0 0 chr3 53933481 53933511 -105666272 + AT_rich Low_complexity Low_complexity 1 30 0 6 996 395 303 6 70 chr3 53933865 53934040 -105665743 - L1_Mur3 LINE L1 -1346 4797 4618 6 996 326 221 160 121 chr3 53934059 53934265 -105665518 - B3 SINE B2 0 216 3 6 996 21 36 0 0 chr3 53934268 53934296 -105665487 + AT_rich Low_complexity Low_complexity 1 28 0 6 996 204 40 0 0 chr3 53934420 53934445 -105665338 + (CA)n Simple_repeat Simple_repeat 2 26 0 6 996 444 37 0 0 chr3 53935147 53935201 -105664582 + (TG)n Simple_repeat Simple_repeat 1 54 0 6 996 1675 217 65 18 chr3 53935257 53935655 -105664128 - MTD LTR MaLR 0 419 3 6 996 317 273 26 60 chr3 53935729 53935846 -105663937 - B4A SINE B4 -156 136 24 6 996 747 308 69 4 chr3 53936385 53936646 -105663137 + B4A SINE B4 3 280 -12 6 996 189 169 120 133 chr3 53937117 53937192 -105662591 + L3 LINE CR1 4343 4416 -73 6 996 1351 264 23 66 chr3 53938429 53938823 -105660960 + MTE2b LTR MaLR 3 379 0 6 996 3213 207 75 28 chr3 53939307 53940096 -105659687 - RLTR19-int LTR ERVK -1819 4318 3493 6 996 1762 176 12 12 chr3 53940252 53940575 -105659208 - RLTR19-int LTR ERVK -2948 3189 2867 6 996 238 249 21 63 chr3 53940765 53940875 -105658908 - RLTR20B1 LTR ERVK -390 178 76 6 996 1981 224 68 36 chr3 53941078 53941490 -105658293 - RLTR19-int LTR ERVK -3261 2876 2449 6 996 297 0 0 0 chr3 53941490 53941523 -105658260 + (CA)n Simple_repeat Simple_repeat 2 34 0 6 996 1981 224 68 36 chr3 53941523 53941637 -105658146 - RLTR19-int LTR ERVK -3689 2448 2333 6 996 273 233 0 0 chr3 53941709 53941769 -105658014 - RLTR19-int LTR ERVK -3808 2329 2270 6 996 1064 206 94 7 chr3 53941827 53942115 -105657668 - RLTR19-int LTR ERVK -4755 1382 1070 6 996 348 253 12 0 chr3 53942259 53942342 -105657441 - RLTR19-int LTR ERVK -5164 973 890 6 996 817 156 0 0 chr3 53942382 53942517 -105657266 + Lx4A LINE L1 6924 7058 0 6 996 347 143 0 25 chr3 53943295 53943374 -105656409 + CT-rich Low_complexity Low_complexity 2 78 0 6 996 2850 29 0 0 chr3 53943457 53943772 -105656011 - L1_Mus1 LINE L1 0 6567 6253 6 996 844 126 8 0 chr3 53944534 53944661 -105655122 + B2_Mm2 SINE B2 3 130 -65 6 996 206 0 0 65 chr3 53945233 53945264 -105654519 + (TAAA)n Simple_repeat Simple_repeat 1 29 0 6 996 261 233 17 0 chr3 53945737 53945797 -105653986 - B3 SINE B2 0 216 156 6 996 660 13 0 0 chr3 53946023 53946100 -105653683 + (TTCC)n Simple_repeat Simple_repeat 1 77 0 6 996 405 109 0 0 chr3 53946101 53946165 -105653618 + (TC)n Simple_repeat Simple_repeat 2 65 0 6 996 1200 121 26 0 chr3 53946335 53946525 -105653258 + B2_Mm2 SINE B2 1 195 0 6 996 207 228 35 0 chr3 53947578 53947635 -105652148 + CT-rich Low_complexity Low_complexity 1 59 0 6 996 4129 50 30 26 chr3 53947854 53948393 -105651390 + L1Md_F2 LINE L1 6030 6570 -12 6 996 475 291 113 25 chr3 53948609 53948813 -105650970 + MLT1A1 LTR MaLR 120 341 -67 7 996 303 321 28 7 chr3 53949133 53949274 -105650509 + Kanga2_a DNA Tc2 545 688 -200 7 996 513 304 22 7 chr3 53949448 53949584 -105650199 - RSINE1 SINE B4 -24 141 4 7 996 709 252 26 0 chr3 53949945 53950096 -105649687 - B3A SINE B2 -41 157 3 7 996 1014 62 39 0 chr3 53950360 53950489 -105649294 + B1_Mus1 SINE Alu 2 135 -13 7 996 231 36 0 0 chr3 53950489 53950517 -105649266 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 7 996 207 0 0 0 chr3 53951366 53951389 -105648394 + (A)n Simple_repeat Simple_repeat 1 23 0 7 996 369 280 62 67 chr3 53951703 53951898 -105647885 + B2_Mm2 SINE B2 2 195 0 7 996 727 174 83 0 chr3 53952094 53952238 -105647545 + Lx8 LINE L1 6777 6932 -541 7 996 933 166 61 25 chr3 53952259 53952457 -105647326 + BGLII_B LTR ERVK 2 206 -235 7 996 1170 188 65 21 chr3 53952439 53952719 -105647064 + MTD LTR MaLR 123 400 -19 7 996 326 244 94 70 chr3 53952764 53952892 -105646891 + MTEb LTR MaLR 162 292 -87 7 996 1335 271 37 16 chr3 53953192 53953574 -105646209 - Lx6 LINE L1 -4 7456 7067 7 996 8774 19 1 0 chr3 53953581 53955322 -105644461 - L1Md_T LINE L1 0 6582 4841 7 996 1276 83 0 22 chr3 53956107 53956292 -105643491 - B2_Mm2 SINE B2 -11 184 4 7 996 423 0 0 0 chr3 53956754 53956801 -105642982 + (CA)n Simple_repeat Simple_repeat 2 48 0 7 996 609 285 6 42 chr3 53956801 53956966 -105642817 + B3 SINE B2 58 216 0 7 996 534 161 19 19 chr3 53957100 53957258 -105642525 + (TA)n Simple_repeat Simple_repeat 1 158 0 7 996 306 0 0 0 chr3 53957262 53957296 -105642487 + (GA)n Simple_repeat Simple_repeat 1 34 0 7 996 189 0 0 0 chr3 53957748 53957769 -105642014 + (T)n Simple_repeat Simple_repeat 1 21 0 7 996 222 128 0 0 chr3 53957949 53957988 -105641795 + (T)n Simple_repeat Simple_repeat 1 39 0 7 996 221 171 0 0 chr3 53958801 53958842 -105640941 + A-rich Low_complexity Low_complexity 1 41 0 7 996 28 29 0 0 chr3 53963019 53963054 -105636729 + AT_rich Low_complexity Low_complexity 1 35 0 7 996 288 0 0 0 chr3 53963481 53963513 -105636270 + (CA)n Simple_repeat Simple_repeat 1 32 0 7 996 198 0 0 0 chr3 53963527 53963549 -105636234 + (TCTA)n Simple_repeat Simple_repeat 1 22 0 7 996 423 0 0 0 chr3 53963549 53963595 -105636188 + (CA)n Simple_repeat Simple_repeat 2 48 0 7 996 396 0 0 0 chr3 53963595 53963639 -105636144 + (TA)n Simple_repeat Simple_repeat 1 44 0 7 996 449 221 32 0 chr3 53964465 53964560 -105635223 + PB1D7 SINE Alu 15 112 -8 7 996 842 145 7 0 chr3 53964577 53964729 -105635054 + (CA)n Simple_repeat Simple_repeat 1 153 0 7 996 241 194 13 40 chr3 53964731 53964806 -105634977 + A-rich Low_complexity Low_complexity 5 77 0 7 996 24 0 0 0 chr3 53964809 53964833 -105634950 + AT_rich Low_complexity Low_complexity 1 24 0 7 996 238 280 0 0 chr3 53965022 53965072 -105634711 - tRNA-Ala-GCY_ tRNA tRNA -10 65 16 7 996 26 88 0 0 chr3 53966545 53966613 -105633170 + AT_rich Low_complexity Low_complexity 1 68 0 7 996 635 203 72 26 chr3 53966978 53967130 -105632653 + RSINE1 SINE B4 5 163 -2 7 996 866 264 6 6 chr3 53968860 53969043 -105630740 + B3 SINE B2 2 184 -32 7 996 333 0 0 0 chr3 53969044 53969081 -105630702 + (CA)n Simple_repeat Simple_repeat 2 38 0 7 996 357 313 97 50 chr3 53969257 53969536 -105630247 - L1MEg LINE L1 -4606 1478 1187 7 996 498 75 0 0 chr3 53969567 53969634 -105630149 + (CTTA)n Simple_repeat Simple_repeat 1 67 0 7 996 635 254 7 0 chr3 53969634 53969772 -105630011 - B1_Mur3 SINE Alu -10 139 1 7 996 859 212 37 42 chr3 53969780 53969997 -105629786 - B3 SINE B2 0 216 1 7 996 825 250 17 0 chr3 53970535 53970711 -105629072 + B3A SINE B2 1 179 -19 7 996 1902 195 69 8 chr3 53970713 53971105 -105628678 + MTD LTR MaLR 4 419 0 7 996 242 342 140 103 chr3 53971377 53971648 -105628135 - ORR1E LTR MaLR -55 304 24 7 996 318 80 0 0 chr3 53971761 53971811 -105627972 + (TTGG)n Simple_repeat Simple_repeat 2 51 0 7 996 1155 71 0 0 chr3 53971811 53971952 -105627831 - B1_Mus1 SINE Alu -6 142 2 7 996 3647 14 0 2 chr3 53972943 53973376 -105626407 + MERVL-int LTR ERVL 239 670 -4815 7 996 635 309 102 27 chr3 53974616 53975165 -105624618 - L1MD1 LINE L1 -336 5906 5317 7 996 221 333 22 67 chr3 53975326 53975339 -105624444 - ID_B1 SINE B4 -128 96 11 7 996 287 292 0 65 chr3 53975339 53975416 -105624367 - ID2 SINE ID -1 82 11 7 996 1056 108 0 0 chr3 53975532 53975689 -105624094 + (TA)n Simple_repeat Simple_repeat 2 158 0 7 996 884 279 42 42 chr3 53976063 53976347 -105623436 + MTEa LTR MaLR 6 289 -90 7 996 463 247 21 0 chr3 53976382 53976475 -105623308 + B3 SINE B2 117 211 -5 7 996 21 0 0 0 chr3 53976719 53976740 -105623043 + AT_rich Low_complexity Low_complexity 1 21 0 7 996 450 0 0 0 chr3 53976797 53976847 -105622936 + (TG)n Simple_repeat Simple_repeat 2 51 0 7 996 516 235 118 0 chr3 53976850 53976986 -105622797 - B3A SINE B2 -46 152 1 7 996 294 263 10 20 chr3 53977313 53977414 -105622369 - L1MEc LINE L1 -5580 820 721 7 996 241 292 19 68 chr3 53977897 53978000 -105621783 - LTR16A LTR ERVL -313 138 41 7 996 581 218 6 0 chr3 53978928 53979093 -105620690 + (TG)n Simple_repeat Simple_repeat 2 167 0 7 996 544 281 68 75 chr3 53979114 53979406 -105620377 - B4A SINE B4 -2 290 1 7 996 344 48 71 12 chr3 53979447 53979532 -105620251 + (TTTTG)n Simple_repeat Simple_repeat 2 91 0 7 996 1075 196 39 18 chr3 53979729 53979958 -105619825 + MTD LTR MaLR 172 405 -14 7 996 298 345 56 92 chr3 53980428 53980734 -105619049 + ORR1E LTR MaLR 20 314 -56 7 996 719 250 0 0 chr3 53980886 53981026 -105618757 - B1_Mur1 SINE Alu -8 141 2 7 996 215 231 39 0 chr3 53981386 53981438 -105618345 + MIRb SINE MIR 181 234 -34 7 996 640 228 47 0 chr3 53981510 53981637 -105618146 + B3 SINE B2 1 133 -83 7 996 665 187 193 0 chr3 53981624 53981774 -105618009 + B3 SINE B2 34 212 -4 7 996 646 250 121 11 chr3 53983236 53983426 -105616357 + ID_B1 SINE B4 5 215 -9 7 996 26 50 0 0 chr3 53983558 53983598 -105616185 + AT_rich Low_complexity Low_complexity 1 40 0 7 996 2270 289 61 37 chr3 53983602 53984586 -105615197 - Lx8 LINE L1 -2 7471 6464 7 996 3018 285 117 50 chr3 53984585 53986677 -105613106 - L1_Mur3 LINE L1 -260 5587 3410 7 996 1281 27 0 0 chr3 53986677 53986824 -105612959 + B1_Mus2 SINE Alu 1 147 0 7 996 3018 282 229 30 chr3 53986824 53987335 -105612448 - L1_Mur3 LINE L1 -2471 3409 2799 7 996 421 253 131 45 chr3 53988013 53988212 -105611571 - B3 SINE B2 0 216 1 7 996 678 25 0 0 chr3 53988889 53988969 -105610814 + (GA)n Simple_repeat Simple_repeat 1 80 0 7 996 576 223 0 0 chr3 53989744 53989883 -105609900 + T-rich Low_complexity Low_complexity 1 139 0 7 996 828 37 0 0 chr3 53989883 53989991 -105609792 - B1_Mm SINE Alu 0 147 40 7 996 254 220 31 62 chr3 53989905 53990002 -105609781 - RLTR25B LTR ERVK -507 521 428 7 996 308 323 15 46 chr3 53990006 53990103 -105609680 - L1MEg LINE L1 -4155 1929 1832 7 996 1048 97 21 0 chr3 53990103 53990247 -105609536 - B1_Mus1 SINE Alu 0 148 2 7 996 308 323 15 46 chr3 53990247 53990279 -105609504 - L1MEg LINE L1 -4253 1831 1804 7 996 584 341 83 11 chr3 53990535 53990594 -105609189 - Lx9 LINE L1 -65 7408 7330 7 996 225 0 0 0 chr3 53990594 53990619 -105609164 + (CA)n Simple_repeat Simple_repeat 2 26 0 7 996 666 316 30 11 chr3 53990619 53990912 -105608871 - Lx9 LINE L1 -207 7437 7034 7 996 1348 194 112 14 chr3 53991424 53991711 -105608072 - MTD LTR MaLR -3 416 102 7 996 305 75 19 0 chr3 53991716 53991769 -105608014 + (TTTTG)n Simple_repeat Simple_repeat 2 55 0 7 996 1164 62 0 0 chr3 53991780 53991925 -105607858 - B1_Mm SINE Alu 0 147 3 7 996 367 229 48 0 chr3 53991925 53992008 -105607775 - MTD LTR MaLR -322 99 13 7 996 315 0 0 0 chr3 53993807 53993842 -105605941 + (TG)n Simple_repeat Simple_repeat 1 35 0 7 996 692 192 6 22 chr3 53994954 53995034 -105604749 + polypurine Low_complexity Low_complexity 1 78 0 7 996 216 0 0 0 chr3 53995034 53995058 -105604725 + (CAGA)n Simple_repeat Simple_repeat 1 24 0 7 996 692 192 6 22 chr3 53995058 53995158 -105604625 + polypurine Low_complexity Low_complexity 79 178 0 7 996 22 0 0 0 chr3 53995577 53995599 -105604184 + AT_rich Low_complexity Low_complexity 1 22 0 7 996 21 57 0 0 chr3 53996100 53996135 -105603648 + AT_rich Low_complexity Low_complexity 1 35 0 7 996 464 202 0 0 chr3 53996973 53997052 -105602731 + B3A SINE B2 1 79 -119 7 996 24 53 0 0 chr3 53997109 53997147 -105602636 + AT_rich Low_complexity Low_complexity 1 38 0 7 996 288 0 0 0 chr3 53997421 53997453 -105602330 + (T)n Simple_repeat Simple_repeat 1 32 0 7 996 219 250 0 0 chr3 53998001 53998069 -105601714 + (TA)n Simple_repeat Simple_repeat 2 69 0 7 996 757 279 50 15 chr3 53998175 53998375 -105601408 + B3 SINE B2 8 214 -2 7 996 414 0 0 0 chr3 53999049 53999095 -105600688 + (TG)n Simple_repeat Simple_repeat 2 47 0 7 997 1203 76 0 0 chr3 54002279 54002436 -105597347 - L1_Mus1 LINE L1 0 6567 6411 1 997 249 340 88 25 chr3 54002815 54002975 -105596808 - MER5A DNA MER1_type 0 189 20 2 997 528 275 0 24 chr3 54004725 54004848 -105594935 + PB1D7 SINE Alu 1 120 0 3 997 626 241 112 18 chr3 54005988 54006157 -105593626 + B3 SINE B2 2 186 -30 4 997 718 283 44 25 chr3 54006985 54007188 -105592595 - B3 SINE B2 -6 210 4 5 997 266 330 23 0 chr3 54007365 54007453 -105592330 - MER2 DNA MER2_type -22 323 234 6 997 233 356 112 9 chr3 54009028 54009144 -105590639 + ORR1E LTR MaLR 15 142 -217 7 997 2141 93 18 12 chr3 54009391 54009718 -105590065 - ORR1A4 LTR MaLR 0 329 1 8 997 600 84 0 0 chr3 54009810 54009893 -105589890 + (TTCC)n Simple_repeat Simple_repeat 3 85 0 9 997 1087 89 7 0 chr3 54009895 54010041 -105589742 - B1_Mus1 SINE Alu 0 148 2 1 997 280 290 10 0 chr3 54010077 54010177 -105589606 - L1_Mur3 LINE L1 -1607 4273 4173 1 997 545 285 101 42 chr3 54010180 54010587 -105589196 - L1_Mur3 LINE L1 -333 5547 5117 1 997 922 315 70 52 chr3 54010642 54011388 -105588395 - L1_Mur3 LINE L1 -1420 4723 3928 1 997 183 42 0 0 chr3 54011388 54011412 -105588371 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1 997 922 315 70 52 chr3 54011412 54011847 -105587936 - L1_Mur3 LINE L1 -2181 3962 3521 1 997 479 334 57 31 chr3 54012016 54012603 -105587180 - L1_Mur3 LINE L1 -3450 2693 2087 1 997 261 263 50 10 chr3 54012993 54013093 -105586690 + (TATATG)n Simple_repeat Simple_repeat 2 105 0 1 997 880 293 17 25 chr3 54013100 54013335 -105586448 - B4 SINE B4 -5 287 55 1 997 222 419 17 0 chr3 54014191 54014308 -105585475 + L2 LINE L2 1232 1350 -2069 1 997 434 314 57 46 chr3 54014516 54014710 -105585073 + L2 LINE L2 2159 2354 -1065 1 997 207 368 144 32 chr3 54014938 54015250 -105584533 + L2 LINE L2 2734 3080 -339 1 997 439 171 0 0 chr3 54016781 54016857 -105582926 + B3A SINE B2 2 77 -121 1 997 384 22 0 0 chr3 54016878 54016923 -105582860 + (CA)n Simple_repeat Simple_repeat 1 45 0 1 997 312 289 109 22 chr3 54017990 54018082 -105581701 - MER2B DNA MER2_type -7 329 230 1 997 274 330 57 91 chr3 54018080 54018212 -105581571 - MER2 DNA MER2_type -137 208 82 6 997 972 213 23 14 chr3 54018212 54018426 -105581357 - B3 SINE B2 0 216 1 2 997 274 330 57 91 chr3 54018426 54018503 -105581280 - MER2 DNA MER2_type -264 81 6 6 997 675 210 0 7 chr3 54019381 54019525 -105580258 - ORR1A1 LTR MaLR -203 143 1 2 997 250 316 198 17 chr3 54019540 54019778 -105580005 - Lx8 LINE L1 -3 7470 7190 2 997 3985 66 55 2 chr3 54019791 54020352 -105579431 - L1_Mus2 LINE L1 -307 6259 5669 2 997 2366 93 0 0 chr3 54020352 54020676 -105579107 + L1_Mus2 LINE L1 6243 6566 0 2 997 314 367 7 20 chr3 54020996 54021149 -105578634 - RLTR17 LTR ERVK -266 426 276 2 997 240 346 101 32 chr3 54021140 54021328 -105578455 - RLTR16 LTR ERVK -271 234 34 2 997 567 348 25 6 chr3 54021344 54021671 -105578112 - Lx8 LINE L1 -282 7191 6859 2 997 5355 82 2 27 chr3 54022893 54023715 -105576068 - L1_Mm LINE L1 -2004 3879 3078 2 997 435 221 20 25 chr3 54024249 54024363 -105575420 + MTEb LTR MaLR 216 325 -54 2 997 267 241 0 0 chr3 54024393 54024451 -105575332 + (TCCA)n Simple_repeat Simple_repeat 4 61 0 2 997 626 158 133 0 chr3 54024920 54025040 -105574743 + B1_Mur2 SINE Alu 1 136 -13 2 997 261 57 0 0 chr3 54025043 54025078 -105574705 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 3 997 926 240 21 0 chr3 54025517 54025709 -105574074 - B3 SINE B2 -20 196 1 3 997 261 0 0 0 chr3 54025742 54025771 -105574012 + (TTTA)n Simple_repeat Simple_repeat 4 32 0 3 997 213 39 0 0 chr3 54027379 54027405 -105572378 + (T)n Simple_repeat Simple_repeat 1 26 0 3 997 807 214 102 0 chr3 54027568 54027764 -105572019 - B3 SINE B2 0 216 1 3 997 189 0 0 0 chr3 54028317 54028338 -105571445 + (A)n Simple_repeat Simple_repeat 1 21 0 3 997 246 125 0 0 chr3 54028947 54028995 -105570788 + (A)n Simple_repeat Simple_repeat 1 48 0 3 997 25 0 0 0 chr3 54030803 54030828 -105568955 + AT_rich Low_complexity Low_complexity 1 25 0 3 997 207 0 0 0 chr3 54031459 54031482 -105568301 + (TCTCTG)n Simple_repeat Simple_repeat 6 28 0 3 997 399 130 30 0 chr3 54031494 54031594 -105568189 + (TCTA)n Simple_repeat Simple_repeat 1 103 0 3 997 1044 196 20 5 chr3 54035930 54036130 -105563653 + B3 SINE B2 1 203 -13 4 997 186 103 0 0 chr3 54036719 54036748 -105563035 + (TAAAAA)n Simple_repeat Simple_repeat 4 32 0 4 997 465 19 0 0 chr3 54036809 54036863 -105562920 + (TA)n Simple_repeat Simple_repeat 2 55 0 4 997 236 319 32 108 chr3 54037000 54037158 -105562625 + ORR1E LTR MaLR 3 148 -211 4 997 973 216 5 38 chr3 54037706 54037918 -105561865 + B3 SINE B2 2 206 -10 4 997 704 184 104 49 chr3 54038318 54038501 -105561282 + B2_Mm2 SINE B2 1 193 -2 4 997 267 319 56 23 chr3 54038912 54039127 -105560656 - L1MEf LINE L1 -4872 1328 1107 4 997 268 283 21 11 chr3 54039127 54039220 -105560563 + CT-rich Low_complexity Low_complexity 2 95 0 4 997 348 284 19 78 chr3 54039234 54039337 -105560446 - PB1D10 SINE Alu -8 109 13 4 997 269 292 67 11 chr3 54039354 54039534 -105560249 - L1MEf LINE L1 -5121 1079 890 4 997 208 145 35 52 chr3 54040109 54040167 -105559616 + T-rich Low_complexity Low_complexity 5 61 0 4 997 211 300 52 85 chr3 54040917 54041070 -105558713 + L2a LINE L2 3229 3376 -50 5 997 552 30 0 0 chr3 54042554 54042620 -105557163 + (GA)n Simple_repeat Simple_repeat 2 67 0 5 997 488 124 30 20 chr3 54042656 54042755 -105557028 + L1_Mur3 LINE L1 4115 4214 -1666 5 997 29 0 0 0 chr3 54043203 54043232 -105556551 + AT_rich Low_complexity Low_complexity 1 29 0 5 997 979 299 50 11 chr3 54043651 54044013 -105555770 - MTEa LTR MaLR 0 379 4 5 997 1011 180 88 0 chr3 54044523 54044717 -105555066 - B3 SINE B2 -5 211 1 5 997 4517 115 30 39 chr3 54045258 54046003 -105553780 - Lx LINE L1 -5 6649 5912 5 997 1398 286 117 10 chr3 54046033 54046624 -105553159 - Lx8 LINE L1 -224 7249 6596 5 997 381 319 87 20 chr3 54046638 54046891 -105552892 - Lx8 LINE L1 -1033 6440 6171 5 997 405 164 0 0 chr3 54046905 54046978 -105552805 + (TG)n Simple_repeat Simple_repeat 2 74 0 5 997 2600 259 112 24 chr3 54047000 54048145 -105551638 - Lx8 LINE L1 -13 5867 4622 5 997 303 262 0 27 chr3 54048148 54048258 -105551525 - L1_Rod LINE L1 -2852 2995 2889 5 997 564 290 60 42 chr3 54048253 54048638 -105551145 - Lx8 LINE L1 -4069 1811 1420 5 997 385 243 85 35 chr3 54048743 54048884 -105550899 - B1F SINE Alu -1 148 1 6 997 1894 127 36 62 chr3 54049432 54049768 -105550015 - ORR1A2 LTR MaLR 0 327 1 6 997 310 364 8 15 chr3 54050639 54050773 -105549010 + MER33 DNA MER1_type 1 133 -191 6 997 360 194 28 0 chr3 54050900 54050972 -105548811 + PB1D10 SINE Alu 35 108 -9 6 997 1151 69 0 139 chr3 54051231 54051433 -105548350 - ORR1A2 LTR MaLR -153 174 1 6 997 606 14 0 0 chr3 54052466 54052537 -105547246 + (TTTTG)n Simple_repeat Simple_repeat 1 71 0 6 997 222 149 0 21 chr3 54052729 54052777 -105547006 + T-rich Low_complexity Low_complexity 6 52 0 6 997 875 240 116 20 chr3 54052852 54053197 -105546586 + L1_Mur3 LINE L1 4815 5192 -688 6 997 290 316 13 0 chr3 54053637 54053713 -105546070 - ID4_ SINE ID -5 78 2 6 997 551 229 32 24 chr3 54053717 54053842 -105545941 - ID_B1 SINE B4 -6 218 93 6 997 522 70 0 0 chr3 54053865 54053936 -105545847 + (TG)n Simple_repeat Simple_repeat 2 72 0 7 997 1052 201 212 32 chr3 54054649 54054989 -105544794 - MTD LTR MaLR -14 405 5 7 997 613 243 15 0 chr3 54055304 54055440 -105544343 - B1_Mur1 SINE Alu -5 144 7 7 997 405 0 0 0 chr3 54055474 54055519 -105544264 + (TCTA)n Simple_repeat Simple_repeat 4 48 0 7 997 22 0 0 0 chr3 54055862 54055884 -105543899 + AT_rich Low_complexity Low_complexity 1 22 0 7 997 1182 223 16 144 chr3 54055979 54056403 -105543380 - ORR1D2 LTR MaLR 0 370 1 7 997 957 197 87 43 chr3 54057117 54057324 -105542459 + B3 SINE B2 1 216 0 7 997 456 340 118 24 chr3 54057547 54057927 -105541856 + MLT1C LTR MaLR 52 467 0 7 997 210 37 0 0 chr3 54057997 54058024 -105541759 + (CAAAAA)n Simple_repeat Simple_repeat 2 28 0 7 997 1172 273 93 67 chr3 54058819 54059057 -105540726 - MT2A LTR ERVL 0 533 275 7 997 201 24 47 47 chr3 54059057 54059100 -105540683 + (TTGG)n Simple_repeat Simple_repeat 1 43 0 8 997 810 171 14 28 chr3 54059100 54059244 -105540539 - B1_Mur4 SINE Alu -8 142 1 8 997 1172 273 93 67 chr3 54059244 54059467 -105540316 - MT2A LTR ERVL -259 274 60 7 997 280 238 28 34 chr3 54059414 54059558 -105540225 - MTE2a LTR MaLR -277 142 2 8 997 325 202 0 200 chr3 54059579 54059684 -105540099 + MT2B LTR ERVL 157 240 -361 8 997 683 257 0 14 chr3 54059602 54059740 -105540043 + B1_Mur1 SINE Alu 6 141 -8 8 997 604 233 58 11 chr3 54059896 54060070 -105539713 + L1MA4 LINE L1 5607 5788 -503 8 997 188 67 33 0 chr3 54060070 54060100 -105539683 + (CA)n Simple_repeat Simple_repeat 2 32 0 8 997 565 262 39 137 chr3 54060100 54060341 -105539442 + L1MA4 LINE L1 5750 5943 -1530 8 997 446 269 29 0 chr3 54061283 54061387 -105538396 - PB1D7 SINE Alu -10 110 4 8 997 2886 207 48 13 chr3 54063254 54063872 -105535911 - Lx2B LINE L1 -163 6837 6198 8 997 3605 145 38 18 chr3 54063858 54064576 -105535207 - Lx2B LINE L1 -1029 5971 5242 8 997 6069 141 30 5 chr3 54064572 54065624 -105534159 + L1_Mur1 LINE L1 2301 3378 -2508 8 997 836 237 8 55 chr3 54066336 54066573 -105533210 - Lx7 LINE L1 -1848 5848 5623 9 997 1017 283 121 20 chr3 54066577 54066974 -105532809 + Lx7 LINE L1 5856 6292 -1404 9 997 697 234 71 0 chr3 54066976 54067117 -105532666 + B3 SINE B2 60 210 -6 9 997 454 233 0 0 chr3 54067657 54067743 -105532040 + B3 SINE B2 103 188 -28 9 997 22 0 0 0 chr3 54067756 54067778 -105532005 + AT_rich Low_complexity Low_complexity 1 22 0 9 997 260 65 0 42 chr3 54069216 54069264 -105530519 + (TTTTTG)n Simple_repeat Simple_repeat 4 49 0 9 997 1039 253 150 15 chr3 54069264 54069605 -105530178 + MTD LTR MaLR 13 399 -20 9 997 183 267 0 62 chr3 54069684 54069748 -105530035 + L2b LINE L2 3309 3368 -7 9 997 22 0 0 0 chr3 54071822 54071844 -105527939 + AT_rich Low_complexity Low_complexity 1 22 0 9 997 701 203 91 62 chr3 54072635 54072783 -105527000 + B3 SINE B2 1 157 -59 9 997 378 0 0 0 chr3 54072783 54072825 -105526958 + (CATA)n Simple_repeat Simple_repeat 2 43 0 9 997 701 203 91 62 chr3 54072825 54072886 -105526897 + B3 SINE B2 158 216 0 9 997 233 250 0 16 chr3 54073005 54073066 -105526717 + (CATATA)n Simple_repeat Simple_repeat 1 60 0 1 997 369 0 0 0 chr3 54073611 54073652 -105526131 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 997 238 132 38 0 chr3 54073670 54073723 -105526060 + (TA)n Simple_repeat Simple_repeat 1 55 0 1 997 320 299 0 0 chr3 54073764 54073831 -105525952 - tRNA-Ala-GCY_ tRNA tRNA -4 71 5 1 997 316 321 50 50 chr3 54075009 54075150 -105524633 + HAL1-3A_ME LINE L1 2297 2437 -421 1 997 513 0 0 0 chr3 54075150 54075207 -105524576 + (GGGA)n Simple_repeat Simple_repeat 1 57 0 1 997 31 0 0 0 chr3 54075576 54075607 -105524176 + AT_rich Low_complexity Low_complexity 1 31 0 1 997 1986 278 76 57 chr3 54076191 54076993 -105522790 - Lx8 LINE L1 -26 7447 6631 1 997 434 271 73 29 chr3 54079104 54079241 -105520542 + B3A SINE B2 2 144 -54 1 997 3224 28 2 17 chr3 54079696 54080037 -105519746 + MTA_Mm LTR MaLR 1 341 -55 1 997 3599 30 2 5 chr3 54080037 54080434 -105519349 + MTA_Mm LTR MaLR 1 396 0 1 997 3224 28 2 17 chr3 54080434 54080494 -105519289 + MTA_Mm LTR MaLR 342 396 0 1 997 395 314 119 55 chr3 54081447 54081683 -105518100 - B4 SINE B4 -41 251 1 1 997 787 208 11 32 chr3 54082137 54082335 -105517448 + B3 SINE B2 2 187 -8 1 997 319 292 75 23 chr3 54082694 54082827 -105516956 - B3 SINE B2 -5 211 72 1 997 1565 157 11 0 chr3 54082827 54083088 -105516695 - Lx9 LINE L1 -441 7203 6940 1 997 863 204 221 9 chr3 54083086 54083421 -105516362 + Lx9 LINE L1 7239 7644 0 1 997 24 77 0 0 chr3 54083522 54083574 -105516209 + AT_rich Low_complexity Low_complexity 1 52 0 1 997 324 232 119 67 chr3 54084965 54085099 -105514684 - L1MA4 LINE L1 -25 6275 6135 1 997 204 158 0 0 chr3 54085239 54085277 -105514506 + CT-rich Low_complexity Low_complexity 5 42 0 1 997 4377 175 60 1 chr3 54085288 54086009 -105513774 - Lx5 LINE L1 0 7050 6288 1 997 230 219 102 20 chr3 54086075 54086173 -105513610 - Lx9 LINE L1 -30 7614 7509 1 997 430 299 98 44 chr3 54086179 54086494 -105513289 - L1MA4 LINE L1 -299 6001 5670 1 997 1617 287 115 10 chr3 54086513 54087139 -105512644 - Lx8 LINE L1 -6 7467 6776 1 997 763 267 91 58 chr3 54087136 54087533 -105512250 - L1MA4 LINE L1 -604 5687 5278 1 997 249 303 0 0 chr3 54087707 54087773 -105512010 + GA-rich Low_complexity Low_complexity 3 68 0 1 997 1534 233 65 23 chr3 54088105 54088504 -105511279 - MTD LTR MaLR 0 419 4 1 997 3372 65 2 2 chr3 54089156 54089555 -105510228 + MTB LTR MaLR 1 399 -1 1 997 315 279 43 79 chr3 54089618 54089758 -105510025 - MTEb LTR MaLR 0 379 245 1 997 25 51 0 0 chr3 54091424 54091463 -105508320 + AT_rich Low_complexity Low_complexity 1 39 0 1 997 873 340 26 24 chr3 54091511 54091565 -105508218 - Lx8 LINE L1 -89 7384 7333 1 997 235 85 43 0 chr3 54091565 54091612 -105508171 + (CA)n Simple_repeat Simple_repeat 1 49 0 1 997 1064 302 11 21 chr3 54091612 54091984 -105507799 - Lx9 LINE L1 -188 7456 7089 1 997 748 289 33 28 chr3 54091985 54092348 -105507435 - L1_Mur3 LINE L1 -6464 1248 884 1 997 2112 185 11 13 chr3 54092581 54092959 -105506824 - ORR1C1 LTR MaLR 0 378 2 1 997 342 256 70 63 chr3 54093478 54093620 -105506163 - B1F SINE Alu -1 148 6 1 997 298 325 65 41 chr3 54093791 54093961 -105505822 - LTR40a LTR ERVL -154 365 192 1 997 232 255 0 0 chr3 54095523 54095602 -105504181 + (CATA)n Simple_repeat Simple_repeat 1 79 0 1 997 444 118 0 0 chr3 54096475 54096543 -105503240 + (TG)n Simple_repeat Simple_repeat 2 69 0 1 997 1241 55 14 0 chr3 54097774 54097919 -105501864 + B1_Mm SINE Alu 1 147 0 1 997 713 45 36 0 chr3 54097926 54098036 -105501747 + (GGGA)n Simple_repeat Simple_repeat 4 117 0 1 997 297 51 0 0 chr3 54098381 54098420 -105501363 + (TCCTG)n Simple_repeat Simple_repeat 4 42 0 1 997 183 100 0 0 chr3 54099228 54099258 -105500525 + (T)n Simple_repeat Simple_repeat 1 30 0 1 997 22 0 0 0 chr3 54099300 54099322 -105500461 + AT_rich Low_complexity Low_complexity 1 22 0 1 997 334 255 71 0 chr3 54100153 54100251 -105499532 - B4A SINE B4 -76 216 112 1 997 1681 58 0 0 chr3 54100251 54100459 -105499324 - L1Md_A LINE L1 -37 6545 6338 1 997 1077 168 92 0 chr3 54100486 54100682 -105499101 - RMER4B LTR ERVK -371 214 1 1 997 21 0 0 0 chr3 54100786 54100807 -105498976 + AT_rich Low_complexity Low_complexity 1 21 0 1 997 335 248 45 62 chr3 54100807 54100919 -105498864 - B4A SINE B4 -173 119 10 1 997 21 57 0 0 chr3 54102105 54102140 -105497643 + AT_rich Low_complexity Low_complexity 1 35 0 1 997 487 348 80 30 chr3 54102472 54102736 -105497047 - MER58B DNA MER1_type 0 341 65 1 997 22 35 0 0 chr3 54102870 54102899 -105496884 + AT_rich Low_complexity Low_complexity 1 29 0 1 997 972 199 6 0 chr3 54103620 54103791 -105495992 + B3 SINE B2 1 172 -44 1 997 478 347 0 7 chr3 54103945 54104093 -105495690 + B1F SINE Alu 3 149 0 1 997 295 151 41 16 chr3 54104605 54104726 -105495057 + (TTTG)n Simple_repeat Simple_repeat 2 125 0 1 997 819 57 0 0 chr3 54106320 54106425 -105493358 + (GGGA)n Simple_repeat Simple_repeat 1 105 0 1 997 185 293 0 0 chr3 54106925 54106966 -105492817 + L2b LINE L2 3238 3278 -97 1 997 230 196 0 0 chr3 54107014 54107060 -105492723 - L1_Rod LINE L1 -1836 4011 3966 1 997 1638 209 15 84 chr3 54107087 54107479 -105492304 - ORR1C1 LTR MaLR -13 365 1 1 997 5361 217 79 26 chr3 54107479 54108780 -105491003 - ORR1C1-int LTR MaLR 0 1370 1 1 997 316 180 16 0 chr3 54108790 54108851 -105490932 - ORR1C1 LTR MaLR -316 62 1 1 997 1102 207 68 52 chr3 54108852 54109228 -105490555 - L1_Rod LINE L1 -4463 1384 998 1 997 335 211 45 27 chr3 54109244 54109356 -105490427 - L1_Rod LINE L1 -6573 1035 922 1 997 690 184 0 0 chr3 54110280 54110394 -105489389 - PB1D9 SINE Alu -6 114 1 1 997 279 0 0 0 chr3 54111334 54111365 -105488418 + (TC)n Simple_repeat Simple_repeat 2 32 0 1 997 216 0 0 0 chr3 54111365 54111388 -105488395 + (TG)n Simple_repeat Simple_repeat 1 24 0 1 997 665 255 93 13 chr3 54111454 54111605 -105488178 + RSINE1 SINE B4 3 165 0 1 997 749 255 23 17 chr3 54112607 54112784 -105486999 - B3 SINE B2 -7 188 1 1 997 191 161 0 18 chr3 54113560 54113617 -105486166 + T-rich Low_complexity Low_complexity 2 57 0 1 997 542 93 0 11 chr3 54113788 54113875 -105485908 + (TA)n Simple_repeat Simple_repeat 2 87 0 1 997 218 184 0 0 chr3 54114907 54114945 -105484838 + C-rich Low_complexity Low_complexity 5 42 0 1 997 1231 241 181 35 chr3 54115575 54116056 -105483727 - RMER4B LTR ERVK -15 570 20 1 997 279 0 0 0 chr3 54118006 54118037 -105481746 + (CATA)n Simple_repeat Simple_repeat 2 32 0 1 997 31 26 0 0 chr3 54118407 54118445 -105481338 + AT_rich Low_complexity Low_complexity 1 38 0 1 997 450 303 82 14 chr3 54120937 54121084 -105478699 - MTEa LTR MaLR 0 379 223 1 997 225 244 149 11 chr3 54121082 54121095 -105478688 - MLT2B2 LTR ERVL -416 99 1 1 997 225 236 54 27 chr3 54121095 54121169 -105478614 - MTEa LTR MaLR -303 76 1 1 997 1032 159 0 0 chr3 54124154 54124379 -105475404 + CT-rich Low_complexity Low_complexity 1 225 0 1 997 21 57 0 0 chr3 54125647 54125682 -105474101 + AT_rich Low_complexity Low_complexity 1 35 0 1 997 2389 107 72 3 chr3 54127257 54127605 -105472178 - Lx4A LINE L1 0 7058 6687 1 997 22 35 0 0 chr3 54127823 54127852 -105471931 + AT_rich Low_complexity Low_complexity 1 29 0 1 997 4065 75 2 6 chr3 54128448 54128954 -105470829 + L1_Mus1 LINE L1 6064 6567 0 1 997 537 302 131 73 chr3 54129009 54129595 -105470188 - L1MD1 LINE L1 -238 6004 5385 1 997 700 254 33 22 chr3 54129858 54130039 -105469744 + B3A SINE B2 1 183 -15 1 997 481 307 6 74 chr3 54130075 54130251 -105469532 - RSINE1 SINE B4 0 165 2 1 997 288 236 0 114 chr3 54131933 54132038 -105467745 + RMER15 LTR ERVL 336 428 -147 1 997 343 307 10 0 chr3 54132483 54132584 -105467199 - RSINE1 SINE B4 -61 104 3 1 998 1317 296 78 36 chr3 54132982 54133561 -105466222 - Lx8 LINE L1 -1284 6189 5587 1 998 234 301 178 0 chr3 54133561 54133634 -105466149 + Lx8 LINE L1 6208 6293 -1180 1 998 1886 179 48 37 chr3 54133634 54133844 -105465939 - ORR1C2 LTR MaLR 0 384 175 1 998 471 35 0 0 chr3 54133844 54133901 -105465882 + (TC)n Simple_repeat Simple_repeat 2 58 0 1 998 1886 179 48 37 chr3 54133901 54134068 -105465715 - ORR1C2 LTR MaLR -210 174 5 1 998 365 208 33 22 chr3 54134070 54134160 -105465623 + Lx8 LINE L1 6290 6378 -1318 1 998 644 265 125 55 chr3 54134166 54134443 -105465340 - L1M4 LINE L1 -714 5470 5181 1 998 1840 180 96 0 chr3 54134443 54134777 -105465006 - ORR1B2 LTR MaLR 0 367 2 1 998 644 264 141 65 chr3 54134777 54135080 -105464703 - L1M4 LINE L1 -966 5180 4846 1 998 324 190 0 0 chr3 54135189 54135268 -105464515 + (TG)n Simple_repeat Simple_repeat 1 79 0 1 998 759 253 40 6 chr3 54135381 54135556 -105464227 + B3 SINE B2 35 215 -1 1 998 498 255 89 34 chr3 54135769 54135915 -105463868 - RSINE1 SINE B4 0 165 12 1 998 1350 263 55 48 chr3 54136725 54137220 -105462563 + RLTR11A2 LTR ERVK 5 502 -25 1 998 274 360 62 87 chr3 54137831 54138187 -105461596 + MamRep605 Unknown Unknown 142 488 -388 1 998 6435 55 17 9 chr3 54138311 54139084 -105460699 + L1_Mus1 LINE L1 5789 6567 0 1 998 609 14 0 0 chr3 54139123 54139193 -105460590 + (GA)n Simple_repeat Simple_repeat 1 70 0 1 998 646 250 128 0 chr3 54139509 54139689 -105460094 - B3 SINE B2 -12 204 2 1 998 3780 146 40 27 chr3 54139991 54140023 -105459760 + Lx6 LINE L1 5167 5196 -684 1 998 333 0 0 0 chr3 54140023 54140060 -105459723 + (GTTTG)n Simple_repeat Simple_repeat 2 38 0 1 998 7241 198 62 27 chr3 54140060 54142076 -105457707 + Lx6 LINE L1 5197 7292 -168 1 998 318 50 0 0 chr3 54142076 54142116 -105457667 + (TTA)n Simple_repeat Simple_repeat 3 42 0 1 998 7241 225 73 27 chr3 54142116 54142284 -105457499 + Lx6 LINE L1 7293 7457 -3 1 998 25 0 0 0 chr3 54142326 54142351 -105457432 + AT_rich Low_complexity Low_complexity 1 25 0 1 998 835 212 91 11 chr3 54142447 54142633 -105457150 - B3 SINE B2 0 216 16 1 998 517 271 51 13 chr3 54142801 54142958 -105456825 + B4A SINE B4 107 269 -23 1 998 207 0 0 0 chr3 54143005 54143028 -105456755 + (CA)n Simple_repeat Simple_repeat 1 23 0 1 998 400 273 79 0 chr3 54145660 54145799 -105453984 + L1MA9 LINE L1 5782 5931 -381 1 998 7615 49 1 3 chr3 54145918 54146846 -105452937 - L1Md_F2 LINE L1 -5 6577 5652 1 998 1355 270 102 82 chr3 54147230 54147855 -105451928 - Lx8 LINE L1 0 7473 6836 1 998 223 185 43 0 chr3 54148076 54148132 -105451651 - L3b LINE CR1 -13 4495 4435 2 998 956 305 104 65 chr3 54148898 54149160 -105450623 + MT2A LTR ERVL 1 244 -289 2 998 234 0 0 0 chr3 54149167 54149193 -105450590 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 2 998 5136 178 21 24 chr3 54149193 54149607 -105450176 - Lx5 LINE L1 -15 7035 6621 2 998 3666 30 0 0 chr3 54149607 54150002 -105449781 - MTA_Mm LTR MaLR -1 395 1 2 998 9766 27 13 0 chr3 54150002 54150400 -105449383 - MTA_Mm-int LTR MaLR 0 1098 700 2 998 180 0 0 0 chr3 54150400 54150420 -105449363 + (CTG)n Simple_repeat Simple_repeat 2 21 0 2 998 9766 27 13 0 chr3 54150420 54151105 -105448678 - MTA_Mm-int LTR MaLR -399 699 2 2 998 3689 28 0 0 chr3 54151105 54151501 -105448282 - MTA_Mm LTR MaLR 0 396 1 2 998 5136 178 21 24 chr3 54151501 54151969 -105447814 - Lx5 LINE L1 -430 6620 6154 2 998 956 305 104 65 chr3 54151969 54152217 -105447566 + MT2A LTR ERVL 245 530 -3 2 998 231 36 0 0 chr3 54152373 54152401 -105447382 + (TG)n Simple_repeat Simple_repeat 2 29 0 2 998 331 286 66 57 chr3 54153120 54153331 -105446452 + LTR52 LTR ERVL 203 415 -6 2 998 22 35 0 0 chr3 54153898 54153927 -105445856 + AT_rich Low_complexity Low_complexity 1 29 0 2 998 288 0 0 0 chr3 54154007 54154039 -105445744 + (TG)n Simple_repeat Simple_repeat 1 32 0 2 998 505 251 59 26 chr3 54154041 54154170 -105445613 - B3A SINE B2 -53 140 3 2 998 337 290 54 36 chr3 54154782 54154950 -105444833 - MIRc SINE MIR -77 191 21 2 998 709 274 69 102 chr3 54155812 54156174 -105443609 - MTE2a LTR MaLR -19 360 11 2 998 1300 196 123 74 chr3 54156865 54157272 -105442511 + Lx4B LINE L1 6631 7057 -1 2 998 231 333 11 0 chr3 54157581 54157674 -105442109 + L1M2 LINE L1 2527 2620 -3523 2 998 509 358 15 42 chr3 54157815 54158288 -105441495 + L1M2 LINE L1 2791 3250 -2893 2 998 360 0 0 0 chr3 54158384 54158424 -105441359 + (CA)n Simple_repeat Simple_repeat 2 41 0 2 998 232 279 38 0 chr3 54158550 54158629 -105441154 + L1M2 LINE L1 4160 4241 -1899 2 998 341 365 5 20 chr3 54158610 54158811 -105440972 + L1MA4 LINE L1 5739 5936 -364 2 998 380 308 33 33 chr3 54159265 54159386 -105440397 + B4A SINE B4 2 122 -170 2 998 231 304 0 0 chr3 54159449 54159518 -105440265 + Lx8 LINE L1 5776 5844 -3 2 998 236 204 20 0 chr3 54159734 54159783 -105440000 + Lx8 LINE L1 6113 6162 -1311 2 998 542 290 30 59 chr3 54159861 54160075 -105439708 + Lx8 LINE L1 6172 6491 -1153 2 998 499 214 10 10 chr3 54160095 54160199 -105439584 + Lx8 LINE L1 6502 6605 -868 2 998 377 81 16 0 chr3 54160265 54160327 -105439456 + (TAGA)n Simple_repeat Simple_repeat 1 63 0 2 998 23 54 0 0 chr3 54160416 54160453 -105439330 + AT_rich Low_complexity Low_complexity 1 37 0 2 998 6200 42 35 0 chr3 54160457 54161173 -105438610 - L1Md_F3 LINE L1 -12 6572 5832 2 998 259 221 110 68 chr3 54161178 54161251 -105438532 + B4A SINE B4 212 287 -5 2 998 230 270 65 43 chr3 54161710 54161803 -105437980 - LTR33A LTR ERVL -296 224 130 2 998 234 0 0 0 chr3 54163155 54163181 -105436602 + (T)n Simple_repeat Simple_repeat 1 26 0 2 998 200 59 29 0 chr3 54164177 54164211 -105435572 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 2 998 408 20 0 0 chr3 54164420 54164469 -105435314 + (TAGA)n Simple_repeat Simple_repeat 2 50 0 2 998 208 185 18 18 chr3 54165328 54165383 -105434400 + (CATATA)n Simple_repeat Simple_repeat 3 57 0 2 998 201 250 0 0 chr3 54166229 54166289 -105433494 + C-rich Low_complexity Low_complexity 2 61 0 2 998 201 305 0 17 chr3 54166294 54166354 -105433429 + CT-rich Low_complexity Low_complexity 4 62 0 2 998 414 0 0 0 chr3 54167004 54167050 -105432733 + (CA)n Simple_repeat Simple_repeat 2 47 0 2 998 423 0 0 0 chr3 54167694 54167741 -105432042 + (CATA)n Simple_repeat Simple_repeat 2 48 0 2 998 24 85 0 0 chr3 54168972 54169031 -105430752 + AT_rich Low_complexity Low_complexity 1 59 0 2 998 600 260 173 0 chr3 54169054 54169227 -105430556 + ID_B1 SINE B4 11 213 -11 2 998 227 311 0 0 chr3 54169960 54170021 -105429762 + (TG)n Simple_repeat Simple_repeat 1 61 0 2 998 279 133 0 0 chr3 54171795 54171840 -105427943 + (TAG)n Simple_repeat Simple_repeat 1 45 0 2 998 432 220 165 51 chr3 54172840 54172998 -105426785 + B3A SINE B2 1 176 -22 2 998 189 107 0 0 chr3 54173243 54173271 -105426512 + (TTTA)n Simple_repeat Simple_repeat 4 31 0 2 998 686 241 153 11 chr3 54175149 54175338 -105424445 + B3 SINE B2 1 216 0 2 998 24 77 0 0 chr3 54177123 54177175 -105422608 + AT_rich Low_complexity Low_complexity 1 52 0 2 998 611 68 154 10 chr3 54178115 54178219 -105421564 - Lx3_Mus LINE L1 0 7009 6891 2 998 234 260 42 0 chr3 54178353 54178449 -105421334 + (TA)n Simple_repeat Simple_repeat 1 100 0 2 998 333 306 21 22 chr3 54179156 54179322 -105420461 + Lx9 LINE L1 7164 7456 -188 2 998 414 0 0 0 chr3 54179322 54179368 -105420415 + (TG)n Simple_repeat Simple_repeat 1 46 0 2 998 254 364 15 61 chr3 54179368 54179397 -105420386 + Lx9 LINE L1 7330 7350 -123 2 998 22 94 0 0 chr3 54179486 54179550 -105420233 + AT_rich Low_complexity Low_complexity 1 64 0 2 998 351 0 0 0 chr3 54180994 54181033 -105418750 + (TTG)n Simple_repeat Simple_repeat 2 40 0 2 998 261 0 0 0 chr3 54181893 54181922 -105417861 + (TTAA)n Simple_repeat Simple_repeat 1 29 0 2 998 479 198 86 31 chr3 54181922 54182084 -105417699 - Lx5 LINE L1 -16 7034 6864 2 998 377 284 144 34 chr3 54187748 54187869 -105411914 + RSINE1 SINE B4 3 142 -23 2 998 243 61 0 0 chr3 54187869 54187902 -105411881 + (CA)n Simple_repeat Simple_repeat 2 34 0 2 998 377 284 144 34 chr3 54187902 54187926 -105411857 + RSINE1 SINE B4 143 164 -1 2 998 522 247 0 0 chr3 54187937 54188099 -105411684 + (CA)n Simple_repeat Simple_repeat 2 163 0 2 998 296 302 85 14 chr3 54188973 54189114 -105410669 + MER58A DNA MER1_type 30 180 -44 2 998 634 289 15 15 chr3 54191264 54191468 -105408315 + B3 SINE B2 1 204 -12 2 998 24 0 0 0 chr3 54191759 54191783 -105408000 + AT_rich Low_complexity Low_complexity 1 24 0 2 998 826 265 24 0 chr3 54192587 54192798 -105406985 + B3 SINE B2 1 216 0 2 998 297 128 0 0 chr3 54196255 54196302 -105403481 + (TG)n Simple_repeat Simple_repeat 1 47 0 2 998 436 254 84 8 chr3 54197044 54197127 -105402656 + B3 SINE B2 73 163 -53 2 998 207 0 0 0 chr3 54197127 54197150 -105402633 + (CA)n Simple_repeat Simple_repeat 2 24 0 2 998 436 254 84 8 chr3 54197150 54197197 -105402586 + B3 SINE B2 164 212 -4 2 998 36 0 0 21 chr3 54197198 54197217 -105402566 + AT_rich Low_complexity Low_complexity 1 19 0 2 998 1180 63 0 0 chr3 54197217 54197360 -105402423 + B1_Mus1 SINE Alu 1 143 -5 2 998 36 0 0 21 chr3 54197360 54197387 -105402396 + AT_rich Low_complexity Low_complexity 1 27 0 2 998 360 301 43 35 chr3 54197546 54198027 -105401756 + Lx6 LINE L1 2889 3341 -2802 2 998 1083 110 35 6 chr3 54198030 54198204 -105401579 - URR1B DNA MER1_type 0 225 47 2 998 565 247 46 31 chr3 54198204 54198223 -105401560 + CYRA11_Mm Unknown Y-chromosome 171 366 -251 2 998 242 304 20 7 chr3 54198240 54198386 -105401397 + Lx6 LINE L1 3345 3492 -2388 2 998 326 267 142 33 chr3 54198519 54198639 -105401144 + RSINE1 SINE B4 2 134 -31 2 998 234 62 0 0 chr3 54198642 54198674 -105401109 + (TG)n Simple_repeat Simple_repeat 1 32 0 2 998 666 123 0 0 chr3 54198674 54198804 -105400979 + (GA)n Simple_repeat Simple_repeat 2 131 0 2 998 3173 141 19 39 chr3 54198825 54199446 -105400337 + Lx6 LINE L1 4109 4717 -1163 2 998 7323 201 52 20 chr3 54199443 54201655 -105398128 + Lx6 LINE L1 5170 7459 -1 2 998 755 174 0 8 chr3 54202031 54202164 -105397619 - B1_Mur3 SINE Alu -3 146 15 2 998 403 296 179 48 chr3 54204235 54204487 -105395296 + ORR1E LTR MaLR 5 289 -85 2 998 230 214 18 18 chr3 54206106 54206163 -105393620 + (TATATG)n Simple_repeat Simple_repeat 3 59 0 2 998 239 283 32 48 chr3 54206163 54206289 -105393494 - RMER12 LTR ERVK -472 850 727 2 998 297 333 95 0 chr3 54206380 54206506 -105393277 + MLT1A0 LTR MaLR 9 146 -219 2 998 272 273 18 108 chr3 54208512 54208623 -105391160 + MT2B LTR ERVL 169 269 -332 2 998 629 210 24 24 chr3 54208531 54208658 -105391125 + B1_Mur1 SINE Alu 21 147 -2 2 998 363 104 367 19 chr3 54208974 54209080 -105390703 - B2_Mm2 SINE B2 -6 189 47 2 998 1106 136 23 0 chr3 54209127 54209303 -105390480 - B2_Mm2 SINE B2 -14 181 2 2 998 264 266 255 0 chr3 54209381 54209475 -105390308 - PB1D9 SINE Alu 0 120 3 2 998 348 314 19 19 chr3 54209706 54209862 -105389921 + Lx9 LINE L1 7221 7376 -268 2 998 22 0 0 0 chr3 54210049 54210071 -105389712 + AT_rich Low_complexity Low_complexity 1 22 0 2 998 426 285 146 0 chr3 54210090 54210213 -105389570 + RSINE1 SINE B4 16 156 -9 2 998 222 128 0 0 chr3 54210213 54210252 -105389531 + (CA)n Simple_repeat Simple_repeat 1 39 0 2 998 432 0 0 0 chr3 54211034 54211082 -105388701 + (TTTA)n Simple_repeat Simple_repeat 1 48 0 2 998 7711 91 31 12 chr3 54211082 54212749 -105387034 - Lx3A LINE L1 -14 6967 5259 2 998 447 316 83 94 chr3 54212778 54213343 -105386440 - L1MEg LINE L1 -4401 1683 1125 2 998 5895 57 31 0 chr3 54213453 54214196 -105385587 - L1Md_F2 LINE L1 -12 6570 5805 2 998 1724 19 10 0 chr3 54214196 54214405 -105385378 + L1Md_F2 LINE L1 5601 5811 -771 2 998 844 173 108 16 chr3 54215482 54215676 -105384107 - B3 SINE B2 0 216 5 2 998 390 300 42 23 chr3 54216369 54216584 -105383199 + L1MA5 LINE L1 6076 6294 -6 2 998 777 286 15 0 chr3 54216658 54216864 -105382919 + B3 SINE B2 1 209 -7 2 998 21 71 0 0 chr3 54217121 54217163 -105382620 + AT_rich Low_complexity Low_complexity 1 42 0 2 998 371 349 7 32 chr3 54218283 54218437 -105381346 - Lx8 LINE L1 -149 7324 7175 2 998 270 314 0 23 chr3 54218769 54218942 -105380841 + (GGATG)n Simple_repeat Simple_repeat 4 172 0 2 998 314 305 6 6 chr3 54218988 54219163 -105380620 + (GGATG)n Simple_repeat Simple_repeat 3 177 0 2 998 789 11 0 0 chr3 54219489 54219579 -105380204 + (GAA)n Simple_repeat Simple_repeat 1 90 0 2 998 890 301 29 21 chr3 54219582 54219965 -105379818 + Lx9 LINE L1 7146 7531 -113 2 998 343 286 99 106 chr3 54220412 54220694 -105379089 + L1MEf LINE L1 787 1066 -5134 2 998 250 332 139 33 chr3 54221051 54221266 -105378517 - MER2 DNA MER2_type -70 275 38 2 998 414 287 24 24 chr3 54222501 54222669 -105377114 + L1ME1 LINE L1 5764 5931 -248 2 998 286 161 18 0 chr3 54222985 54223041 -105376742 - B1_Mur2 SINE Alu -6 143 87 2 998 307 188 95 48 chr3 54223143 54223227 -105376556 - PB1D7 SINE Alu -23 97 10 2 998 210 352 92 9 chr3 54223144 54223253 -105376530 - ID_B1 SINE B4 -48 176 59 2 998 742 141 17 12 chr3 54223276 54223448 -105376335 + (TG)n Simple_repeat Simple_repeat 2 174 0 2 998 740 213 134 16 chr3 54223473 54223495 -105376288 - B3 SINE B2 -8 208 188 2 998 706 28 46 0 chr3 54223495 54223604 -105376179 + (TG)n Simple_repeat Simple_repeat 2 115 0 3 998 740 213 134 16 chr3 54223604 54223767 -105376016 - B3 SINE B2 -29 187 1 2 998 22 0 0 0 chr3 54223799 54223821 -105375962 + AT_rich Low_complexity Low_complexity 1 22 0 3 998 262 335 12 88 chr3 54223899 54224069 -105375714 + RMER4B LTR ERVK 7 163 -422 3 998 835 239 91 0 chr3 54225659 54225856 -105373927 + B3 SINE B2 2 216 0 3 998 303 261 104 35 chr3 54225896 54226011 -105373772 + Kanga1 DNA Tc2 6 128 -1617 3 998 273 299 19 58 chr3 54226278 54226381 -105373402 + Arthur1A DNA Tip100 2 100 -77 3 998 912 200 68 24 chr3 54226584 54226789 -105372994 + B3 SINE B2 2 215 -1 3 998 279 0 0 0 chr3 54227294 54227325 -105372458 + (CA)n Simple_repeat Simple_repeat 2 32 0 3 998 518 271 64 0 chr3 54227511 54227651 -105372132 + B1F1 SINE Alu 1 149 0 3 998 21 36 0 0 chr3 54227752 54227780 -105372003 + AT_rich Low_complexity Low_complexity 1 28 0 3 998 977 210 34 10 chr3 54227787 54227994 -105371789 - B3 SINE B2 -3 213 2 3 998 188 260 99 50 chr3 54228507 54228608 -105371175 - MIRb SINE MIR -159 109 4 3 998 27 29 0 0 chr3 54230072 54230106 -105369677 + AT_rich Low_complexity Low_complexity 1 34 0 3 998 236 179 89 0 chr3 54230350 54230406 -105369377 + Lx8 LINE L1 7408 7468 -5 3 998 393 22 0 0 chr3 54230643 54230689 -105369094 + (TAGA)n Simple_repeat Simple_repeat 3 48 0 3 998 731 210 77 5 chr3 54230769 54230989 -105368794 - RCHARR1 DNA MER1_type -78 896 661 3 998 988 266 26 4 chr3 54231192 54231460 -105368323 + Lx8 LINE L1 6342 6615 -858 3 998 341 232 14 0 chr3 54231473 54231542 -105368241 - RCHARR1 DNA MER1_type -902 72 3 3 998 297 0 0 0 chr3 54232160 54232193 -105367590 + (GTTTG)n Simple_repeat Simple_repeat 2 34 0 3 998 335 150 8 45 chr3 54232574 54232707 -105367076 + T-rich Low_complexity Low_complexity 3 130 0 3 998 1276 55 0 0 chr3 54232707 54232853 -105366930 - B1_Mm SINE Alu 0 147 2 3 998 1087 190 54 20 chr3 54233038 54233242 -105366541 - B3 SINE B2 -5 211 1 3 998 195 379 73 0 chr3 54233497 54233621 -105366162 - MIRb SINE MIR -114 154 22 3 998 727 179 70 38 chr3 54234295 54234452 -105365331 + B3 SINE B2 1 162 -54 3 998 645 105 0 0 chr3 54234869 54234964 -105364819 + (TC)n Simple_repeat Simple_repeat 1 95 0 3 998 537 176 46 17 chr3 54234950 54235123 -105364660 + CT-rich Low_complexity Low_complexity 2 179 0 3 998 230 246 140 0 chr3 54235138 54235195 -105364588 - tRNA-Ala-GCY_ tRNA tRNA -9 66 2 3 998 182 91 30 0 chr3 54235419 54235452 -105364331 + (TTA)n Simple_repeat Simple_repeat 3 36 0 3 998 229 239 176 41 chr3 54236546 54236716 -105363067 + L1MA8 LINE L1 5958 6150 -141 3 998 1088 214 15 10 chr3 54237099 54237302 -105362481 + B3 SINE B2 1 204 -12 3 998 402 286 19 19 chr3 54237530 54237637 -105362146 + B4A SINE B4 94 200 -92 3 998 222 191 0 0 chr3 54237727 54237774 -105362009 + (CA)n Simple_repeat Simple_repeat 2 48 0 3 998 238 287 122 65 chr3 54238979 54239102 -105360681 + L2b LINE L2 3246 3375 0 3 998 979 249 47 150 chr3 54239513 54239985 -105359798 - RLTR23 LTR ERV1 0 430 8 3 998 252 79 0 73 chr3 54240859 54240927 -105358856 + (TTTG)n Simple_repeat Simple_repeat 2 64 0 3 998 293 266 102 80 chr3 54241421 54241552 -105358231 - MTEb LTR MaLR -57 322 164 3 998 563 186 18 23 chr3 54241575 54241746 -105358037 + (TGGA)n Simple_repeat Simple_repeat 1 170 0 3 998 683 324 111 75 chr3 54241759 54242383 -105357400 + RMER13A LTR ERVK 1 646 -214 3 998 185 180 20 0 chr3 54242525 54242575 -105357208 + (TAGA)n Simple_repeat Simple_repeat 2 52 0 3 998 201 74 0 0 chr3 54242573 54242600 -105357183 + (GGGAGA)n Simple_repeat Simple_repeat 5 31 0 3 998 291 28 0 0 chr3 54242602 54242638 -105357145 + (CATA)n Simple_repeat Simple_repeat 1 36 0 3 998 554 0 15 0 chr3 54242663 54242729 -105357054 + (TAGA)n Simple_repeat Simple_repeat 3 69 0 3 998 758 237 137 0 chr3 54243397 54243587 -105356196 + B3 SINE B2 1 216 0 3 998 4153 230 20 71 chr3 54243865 54244969 -105354814 + RMER1C Other Other 163 1339 -3 3 998 195 69 0 0 chr3 54245097 54245126 -105354657 + (TTTTTG)n Simple_repeat Simple_repeat 3 31 0 3 998 685 217 0 51 chr3 54245241 54245416 -105354367 - RMER20B LTR ERVK 0 627 462 3 998 1286 123 64 5 chr3 54245542 54245762 -105354021 - Lx2 LINE L1 0 6997 6765 3 998 3083 88 2 10 chr3 54245751 54246164 -105353619 - Lx2 LINE L1 -352 6645 6236 3 998 483 130 0 91 chr3 54246161 54246271 -105353512 - L1_Mur2 LINE L1 -1226 4651 4552 3 998 7541 102 12 6 chr3 54246269 54247531 -105352252 + Lx LINE L1 5383 6652 -2 3 998 384 290 112 0 chr3 54248146 54248253 -105351530 + ID_B1 SINE B4 84 202 -22 3 998 680 194 228 62 chr3 54248552 54248811 -105350972 - Lx7 LINE L1 0 7696 7395 3 998 369 0 0 0 chr3 54248811 54248852 -105350931 + (CA)n Simple_repeat Simple_repeat 2 42 0 3 998 369 62 0 0 chr3 54248852 54248900 -105350883 + (TATATG)n Simple_repeat Simple_repeat 1 48 0 3 998 1101 20 27 0 chr3 54248903 54249050 -105350733 + (TAGA)n Simple_repeat Simple_repeat 4 154 0 3 998 256 215 30 30 chr3 54250292 54250359 -105349424 - L1MA8 LINE L1 -45 6246 6180 3 998 218 170 38 0 chr3 54250359 54250412 -105349371 + (TA)n Simple_repeat Simple_repeat 1 55 0 3 998 297 177 0 0 chr3 54250412 54250462 -105349321 + (TG)n Simple_repeat Simple_repeat 1 50 0 3 998 519 17 0 0 chr3 54250462 54250522 -105349261 + (TAGA)n Simple_repeat Simple_repeat 3 62 0 3 998 297 177 0 0 chr3 54250522 54250533 -105349250 + (TG)n Simple_repeat Simple_repeat 2 12 0 3 998 2267 132 44 68 chr3 54252125 54252508 -105347275 + ORR1C1 LTR MaLR 5 378 0 3 998 5086 232 63 36 chr3 54252508 54252690 -105347093 + ORR1C1-int LTR MaLR 15 221 -1149 3 998 1909 147 5 126 chr3 54252690 54253064 -105346719 + ORR1A4 LTR MaLR 1 329 0 3 998 5086 232 63 36 chr3 54253064 54253939 -105345844 + ORR1C1-int LTR MaLR 222 1127 -243 3 998 3753 20 2 0 chr3 54253939 54254334 -105345449 + MTA_Mm LTR MaLR 1 396 0 3 998 5086 232 63 36 chr3 54254334 54254592 -105345191 + ORR1C1-int LTR MaLR 1128 1370 0 3 998 1769 179 77 11 chr3 54254597 54254947 -105344836 + ORR1C1 LTR MaLR 6 378 0 3 998 234 268 60 24 chr3 54255408 54255492 -105344291 + MLT1J LTR MaLR 71 157 -355 3 998 243 0 0 0 chr3 54255505 54255532 -105344251 + (T)n Simple_repeat Simple_repeat 1 27 0 3 998 1074 194 43 19 chr3 54255826 54256036 -105343747 + B3 SINE B2 2 216 0 3 998 277 284 52 10 chr3 54256296 54256392 -105343391 + MLT1J LTR MaLR 71 170 -342 3 998 1010 239 19 5 chr3 54257429 54257635 -105342148 + B3 SINE B2 1 209 -7 3 998 2710 160 40 31 chr3 54258166 54258426 -105341357 - RLTR11A2 LTR ERVK 0 527 272 3 998 2180 122 41 49 chr3 54258426 54258771 -105341012 + ORR1A1 LTR MaLR 5 346 0 3 998 2710 160 40 31 chr3 54258771 54259032 -105340751 - RLTR11A2 LTR ERVK -256 271 1 3 998 195 371 70 0 chr3 54259192 54259335 -105340448 - L3 LINE CR1 -351 4138 3986 3 998 467 244 129 57 chr3 54259510 54259634 -105340149 - PB1D10 SINE Alu 0 149 17 3 998 521 207 137 8 chr3 54259650 54259767 -105340016 - ID_B1 SINE B4 -9 215 84 3 998 1013 201 0 15 chr3 54262030 54262227 -105337556 - B2_Mm2 SINE B2 0 195 2 3 998 239 173 19 0 chr3 54262601 54262653 -105337130 + GA-rich Low_complexity Low_complexity 2 54 0 3 998 746 261 88 95 chr3 54262701 54263211 -105336572 + RLTR12B LTR ERVK 42 500 -27 3 998 237 250 41 14 chr3 54263395 54263468 -105336315 + PB1D10 SINE Alu 3 77 -40 3 999 558 305 43 78 chr3 54263809 54264090 -105335693 + B4A SINE B4 4 274 -18 3 999 626 82 10 0 chr3 54264403 54264501 -105335282 + (TG)n Simple_repeat Simple_repeat 2 100 0 3 999 519 294 149 41 chr3 54264501 54264696 -105335087 - ID_B1 SINE B4 -7 217 2 3 999 494 154 0 4 chr3 54264880 54265004 -105334779 + (CTG)n Simple_repeat Simple_repeat 1 123 0 3 999 960 111 0 0 chr3 54265004 54265184 -105334599 + (TCC)n Simple_repeat Simple_repeat 1 180 0 3 999 494 157 0 7 chr3 54265184 54265254 -105334529 + (CTG)n Simple_repeat Simple_repeat 2 71 0 3 999 559 172 15 0 chr3 54266473 54266607 -105333176 + GA-rich Low_complexity Low_complexity 3 138 0 3 999 916 231 142 94 chr3 54267698 54268037 -105331746 - ORR1E LTR MaLR -4 355 1 3 999 248 251 134 22 chr3 54268401 54268580 -105331203 + L1M3f LINE L1 1074 1272 -4110 3 999 885 183 225 0 chr3 54268647 54268816 -105330967 + B3 SINE B2 1 207 -9 3 999 1472 61 39 0 chr3 54268884 54269064 -105330719 + B2_Mm2 SINE B2 3 189 -6 3 999 234 312 25 0 chr3 54269407 54269487 -105330296 + L1M3f LINE L1 1677 1758 -4626 3 999 23 0 0 0 chr3 54269875 54269898 -105329885 + AT_rich Low_complexity Low_complexity 1 23 0 3 999 802 272 185 55 chr3 54270126 54271062 -105328721 + L1M3f LINE L1 2855 3908 -2471 3 999 202 271 17 0 chr3 54271077 54271136 -105328647 + GA-rich Low_complexity Low_complexity 1 60 0 3 999 443 194 9 0 chr3 54271646 54271754 -105328029 + (TA)n Simple_repeat Simple_repeat 1 109 0 3 999 779 238 209 17 chr3 54271844 54272232 -105327551 + L1M3f LINE L1 3915 4410 -1969 3 999 6141 39 0 0 chr3 54272366 54273082 -105326701 - L1Md_F2 LINE L1 -247 6335 5620 3 999 1679 64 5 0 chr3 54273082 54273286 -105326497 + L1Md_F2 LINE L1 6359 6563 -19 3 999 658 236 58 34 chr3 54273349 54273555 -105326228 + L1M3f LINE L1 4637 4847 -1532 3 999 26 0 0 0 chr3 54274214 54274240 -105325543 + AT_rich Low_complexity Low_complexity 1 26 0 3 999 399 73 0 0 chr3 54274497 54274552 -105325231 + (CA)n Simple_repeat Simple_repeat 1 55 0 3 999 260 234 94 0 chr3 54274634 54274698 -105325085 - MTD LTR MaLR -308 111 42 3 999 420 152 46 29 chr3 54274732 54274830 -105324953 + MTD LTR MaLR 278 419 0 3 999 606 109 0 0 chr3 54274981 54275073 -105324710 + (TTCC)n Simple_repeat Simple_repeat 2 93 0 3 999 1042 131 0 11 chr3 54276479 54276849 -105322934 + (TTC)n Simple_repeat Simple_repeat 1 365 0 3 999 1068 141 0 0 chr3 54276852 54277029 -105322754 + (TCC)n Simple_repeat Simple_repeat 2 178 0 3 999 465 158 0 0 chr3 54277030 54277112 -105322671 + CT-rich Low_complexity Low_complexity 3 84 0 3 999 631 224 62 47 chr3 54277423 54277460 -105322323 - B2_Mm2 SINE B2 0 195 162 3 999 243 61 0 0 chr3 54277460 54277493 -105322290 + (TG)n Simple_repeat Simple_repeat 1 33 0 4 999 306 0 0 0 chr3 54277493 54277526 -105322257 + (GA)n Simple_repeat Simple_repeat 1 34 0 4 999 729 233 78 20 chr3 54277526 54277679 -105322104 - B3 SINE B2 -54 162 1 4 999 234 0 0 89 chr3 54277696 54277741 -105322042 + (TTTTG)n Simple_repeat Simple_repeat 5 45 0 4 999 287 361 21 53 chr3 54278413 54278603 -105321180 - LTR86C LTR ERVL -27 594 411 4 999 2814 120 10 280 chr3 54278711 54279487 -105320296 + RMER2 LTR ERV1 1 567 0 4 999 655 230 36 0 chr3 54280440 54280579 -105319204 + ID_B1 SINE B4 81 224 0 4 999 667 273 82 10 chr3 54281623 54281819 -105317964 + B3 SINE B2 1 210 -6 4 999 1472 311 38 51 chr3 54282520 54283524 -105316259 + Lx LINE L1 4990 5920 -734 4 999 799 172 25 0 chr3 54284985 54285148 -105314635 + L1VL4 LINE L1 20 327 -5975 4 999 1009 149 20 5 chr3 54285140 54285335 -105314448 + L1_Mur2 LINE L1 5165 5362 -515 4 999 180 216 0 0 chr3 54286067 54286118 -105313665 + (TGG)n Simple_repeat Simple_repeat 1 51 0 4 999 206 319 0 0 chr3 54286130 54286199 -105313584 + (TGG)n Simple_repeat Simple_repeat 1 69 0 4 999 4182 78 5 24 chr3 54286248 54286842 -105312941 + RLTR19-int LTR ERVK 1430 2012 -4125 4 999 2067 117 30 0 chr3 54286858 54287157 -105312626 + L1_Mm LINE L1 5357 5664 -219 4 999 4638 16 0 12 chr3 54287157 54287656 -105312127 + MT2_Mm LTR ERVL 1 493 0 4 999 4005 44 9 4 chr3 54287666 54288127 -105311656 + L1Md_F3 LINE L1 6120 6582 -2 4 999 3180 118 29 45 chr3 54288132 54288647 -105311136 + Lx LINE L1 6141 6647 -7 4 999 246 288 16 83 chr3 54288828 54288949 -105310834 - RMER1C Other Other 0 1342 1230 4 999 1788 297 118 10 chr3 54288852 54289543 -105310240 - Lx8 LINE L1 -2 7471 6703 4 999 266 0 29 0 chr3 54290028 54290062 -105309721 + (TTTG)n Simple_repeat Simple_repeat 1 35 0 4 999 433 44 14 14 chr3 54290125 54290194 -105309589 + (TCTA)n Simple_repeat Simple_repeat 4 72 0 4 999 519 212 25 0 chr3 54290468 54290628 -105309155 + GA-rich Low_complexity Low_complexity 4 167 0 4 999 24 53 0 0 chr3 54290636 54290674 -105309109 + AT_rich Low_complexity Low_complexity 1 38 0 4 999 286 29 0 0 chr3 54290842 54290876 -105308907 + U2 snRNA snRNA 1 34 -154 4 999 512 262 39 39 chr3 54291721 54291848 -105307935 + RSINE1 SINE B4 1 127 -38 4 999 909 234 15 19 chr3 54291855 54292060 -105307723 + B3 SINE B2 4 207 -9 4 999 1459 6 0 0 chr3 54292060 54292220 -105307563 + L1Md_A LINE L1 6423 6582 0 4 999 26 64 0 0 chr3 54292405 54292452 -105307331 + AT_rich Low_complexity Low_complexity 1 47 0 4 999 294 106 0 0 chr3 54292463 54292510 -105307273 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 4 999 353 317 39 47 chr3 54292525 54292538 -105307245 + ID_B1 SINE B4 82 209 -15 4 999 568 259 43 0 chr3 54292538 54292654 -105307129 + B1_Mur2 SINE Alu 14 134 -15 4 999 480 35 0 0 chr3 54292654 54292712 -105307071 + (TAG)n Simple_repeat Simple_repeat 3 60 0 4 999 2216 164 5 11 chr3 54292744 54293121 -105306662 + RLTR14 LTR ERV1 7 381 -1 4 999 1080 259 20 34 chr3 54294589 54294885 -105304898 + B4A SINE B4 1 292 0 4 999 463 372 60 53 chr3 54295349 54295667 -105304116 + MLT1I LTR MaLR 48 367 -44 4 999 317 222 46 13 chr3 54295716 54295815 -105303968 - MTD LTR MaLR -14 405 280 4 999 1116 62 0 0 chr3 54295817 54295961 -105303822 + B1_Mus1 SINE Alu 5 148 0 4 999 281 210 16 16 chr3 54295980 54296043 -105303740 - MTD LTR MaLR -89 330 268 4 999 260 207 0 79 chr3 54296067 54296130 -105303653 - MTC LTR MaLR -363 58 1 4 999 197 299 30 0 chr3 54296131 54296198 -105303585 - L2 LINE L2 -693 2726 2658 4 999 681 262 93 109 chr3 54296248 54296312 -105303471 + L1MA8 LINE L1 5793 5846 -445 4 999 4749 51 2 0 chr3 54296312 54296861 -105302922 + L1Md_F2 LINE L1 6030 6579 -3 4 999 681 262 93 109 chr3 54296861 54297265 -105302518 + L1MA8 LINE L1 5847 6253 -38 4 999 453 252 44 148 chr3 54297265 54297447 -105302336 - RSINE1 SINE B4 0 165 3 4 999 681 262 93 109 chr3 54297447 54297482 -105302301 + L1MA8 LINE L1 6254 6289 -2 4 999 244 250 35 35 chr3 54297804 54297891 -105301892 + L1MA5 LINE L1 5939 6025 -278 4 999 1359 65 11 5 chr3 54297945 54298211 -105301572 + L1_Mus4 LINE L1 6440 6636 0 4 999 466 215 26 59 chr3 54298217 54298370 -105301413 + L1MA5 LINE L1 6134 6281 -19 4 999 191 212 74 12 chr3 54299189 54299270 -105300513 + MIR SINE MIR 45 130 -78 4 999 1132 284 56 25 chr3 54299765 54300286 -105299497 - L1MA5A LINE L1 -436 5861 5325 4 999 805 282 10 5 chr3 54300290 54300497 -105299286 - Lx8 LINE L1 -806 6667 6460 4 999 534 259 65 87 chr3 54300498 54300773 -105299010 - Lx8 LINE L1 -1166 6307 6039 4 999 465 187 0 0 chr3 54300894 54301028 -105298755 + CT-rich Low_complexity Low_complexity 1 134 0 4 999 432 0 0 0 chr3 54301028 54301076 -105298707 + (TG)n Simple_repeat Simple_repeat 1 48 0 4 999 424 252 53 20 chr3 54301730 54301880 -105297903 - LTR55 LTR ERV -362 186 32 4 999 723 274 56 5 chr3 54302076 54302289 -105297494 + MER2 DNA MER2_type 3 226 -119 4 999 1509 74 10 10 chr3 54303137 54303329 -105296454 + B2_Mm1t SINE B2 2 193 0 4 999 249 33 0 0 chr3 54303519 54303549 -105296234 + (TG)n Simple_repeat Simple_repeat 2 31 0 4 999 546 346 98 25 chr3 54303589 54303845 -105295938 - B4A SINE B4 -1 291 2 4 999 180 0 0 0 chr3 54303912 54303932 -105295851 + (CAA)n Simple_repeat Simple_repeat 2 21 0 4 999 354 266 147 8 chr3 54304632 54304763 -105295020 + MLT1A0 LTR MaLR 30 183 -225 4 999 2661 162 47 137 chr3 54304768 54305000 -105294783 - RMER20B LTR ERVK -2 625 416 4 999 2460 8 0 0 chr3 54305000 54305259 -105294524 - L1Md_A LINE L1 0 6582 6324 4 999 2661 162 47 137 chr3 54305259 54305713 -105294070 - RMER20B LTR ERVK -212 415 1 4 999 22 35 0 0 chr3 54307868 54307897 -105291886 + AT_rich Low_complexity Low_complexity 1 29 0 4 999 1051 167 72 10 chr3 54308146 54308340 -105291443 + B3 SINE B2 1 206 -10 4 999 354 275 56 104 chr3 54309246 54309514 -105290269 + RMER15 LTR ERVL 319 573 -2 4 999 398 287 8 57 chr3 54310132 54310254 -105289529 + PB1D10 SINE Alu 1 116 -1 4 999 756 270 6 18 chr3 54310547 54310713 -105289070 + RSINE1 SINE B4 2 165 0 4 999 23 0 0 0 chr3 54310772 54310795 -105288988 + AT_rich Low_complexity Low_complexity 1 23 0 4 999 486 0 0 0 chr3 54310900 54310954 -105288829 + (TC)n Simple_repeat Simple_repeat 1 54 0 4 999 237 318 115 19 chr3 54312330 54312487 -105287296 - RMER15 LTR ERVL -52 523 352 4 999 21 0 0 0 chr3 54312796 54312817 -105286966 + AT_rich Low_complexity Low_complexity 1 21 0 4 999 232 232 36 0 chr3 54313169 54313225 -105286558 - ORR1D2 LTR MaLR -310 60 3 4 999 670 219 76 5 chr3 54314327 54314511 -105285272 - Lx8 LINE L1 0 7473 7277 4 999 1020 261 140 3 chr3 54315248 54315541 -105284242 - MTE2a LTR MaLR -3 376 44 4 999 251 260 84 28 chr3 54315605 54315712 -105284071 + L2 LINE L2 1403 1515 -1904 4 999 244 290 16 0 chr3 54316069 54316131 -105283652 + ZP3AR Satellite Satellite 20 82 -130 4 999 468 135 14 0 chr3 54316092 54316166 -105283617 + BC1_Mm scRNA scRNA 2 76 -76 4 999 793 281 46 0 chr3 54316193 54316389 -105283394 + MTE2b LTR MaLR 140 344 -35 4 999 378 0 0 0 chr3 54316557 54316599 -105283184 + (TG)n Simple_repeat Simple_repeat 2 43 0 4 999 973 259 14 5 chr3 54318815 54319028 -105280755 - B3 SINE B2 0 216 2 4 999 21 0 0 0 chr3 54319887 54319908 -105279875 + AT_rich Low_complexity Low_complexity 1 21 0 4 999 375 23 0 0 chr3 54320031 54320075 -105279708 + (CA)n Simple_repeat Simple_repeat 2 45 0 4 999 507 107 0 0 chr3 54320883 54320958 -105278825 + (TG)n Simple_repeat Simple_repeat 2 76 0 4 999 887 309 68 20 chr3 54320981 54321232 -105278551 - B4 SINE B4 -27 265 3 4 999 1894 179 59 59 chr3 54321862 54322271 -105277512 - MTD LTR MaLR -3 416 8 4 999 432 358 99 54 chr3 54322421 54322663 -105277120 - B4A SINE B4 -4 288 36 4 999 260 298 109 59 chr3 54323013 54323200 -105276583 - HAL1 LINE L1 -894 1613 1419 4 999 360 0 0 0 chr3 54323200 54323240 -105276543 + (TG)n Simple_repeat Simple_repeat 2 41 0 4 999 260 298 109 59 chr3 54323240 54323594 -105276189 - HAL1 LINE L1 -1089 1418 1045 4 999 668 184 17 116 chr3 54323612 54323780 -105276003 + MTD LTR MaLR 8 158 -261 4 999 607 296 146 0 chr3 54323780 54324047 -105275736 - MER44A DNA MER2_type -2 337 32 4 999 1723 161 157 27 chr3 54324306 54324644 -105275139 + RLTR14 LTR ERV1 1 382 0 4 999 291 262 26 97 chr3 54324923 54325037 -105274746 + RMER15 LTR ERVL 368 473 -102 4 999 327 261 150 18 chr3 54325144 54325257 -105274526 + MER70B LTR ERVL 263 390 -188 4 999 207 0 0 0 chr3 54325360 54325383 -105274400 + (GTTTG)n Simple_repeat Simple_repeat 2 24 0 4 999 241 342 48 72 chr3 54325950 54326117 -105273666 - MLT1B LTR MaLR -24 366 204 4 999 30 0 0 0 chr3 54326150 54326180 -105273603 + AT_rich Low_complexity Low_complexity 1 30 0 4 999 402 339 79 0 chr3 54326772 54326899 -105272884 + ID_B1 SINE B4 85 221 -3 4 999 1127 104 85 0 chr3 54327230 54327394 -105272389 + B2_Mm2 SINE B2 2 179 -16 4 999 766 276 11 16 chr3 54327504 54327688 -105272095 + ID_B1 SINE B4 38 220 -4 4 999 819 224 108 10 chr3 54328103 54328297 -105271486 + B3 SINE B2 1 213 -3 4 999 887 157 132 11 chr3 54329485 54329659 -105270124 + B3 SINE B2 1 195 -21 4 999 662 244 43 27 chr3 54330112 54330297 -105269486 + B3A SINE B2 1 188 -10 4 999 221 305 0 17 chr3 54331104 54331164 -105268619 + PB1D10 SINE Alu 27 85 -32 4 999 1171 218 10 5 chr3 54331548 54331755 -105268028 + B3 SINE B2 2 209 -7 4 999 931 236 34 15 chr3 54332281 54332487 -105267296 + B3 SINE B2 2 211 -5 5 999 565 235 6 18 chr3 54332991 54333319 -105266464 + GA-rich Low_complexity Low_complexity 1 324 0 5 999 1279 27 0 0 chr3 54333394 54333541 -105266242 - B1_Mus2 SINE Alu 0 147 1 5 999 554 103 11 0 chr3 54334007 54334094 -105265689 + (GAAA)n Simple_repeat Simple_repeat 3 90 0 5 999 655 337 51 37 chr3 54335209 54335641 -105264142 + MLT2B3 LTR ERVL 71 508 -46 5 999 241 96 0 71 chr3 54335670 54335726 -105264057 + (TATG)n Simple_repeat Simple_repeat 4 55 0 5 999 2859 62 3 3 chr3 54335996 54336366 -105263417 + L1Md_F2 LINE L1 6211 6580 -2 5 999 267 154 0 0 chr3 54336702 54336767 -105263016 + A-rich Low_complexity Low_complexity 1 65 0 5 999 294 233 33 11 chr3 54336853 54336944 -105262839 - Lx9 LINE L1 -20 7624 7532 5 999 619 209 0 14 chr3 54337211 54337491 -105262292 + GA-rich Low_complexity Low_complexity 1 275 0 5 999 1220 61 6 16 chr3 54337491 54337673 -105262110 + (GAA)n Simple_repeat Simple_repeat 1 180 0 5 999 1071 209 5 54 chr3 54338128 54338350 -105261433 + B3 SINE B2 1 211 -5 5 999 363 23 0 0 chr3 54338653 54338697 -105261086 + (CA)n Simple_repeat Simple_repeat 2 45 0 5 999 252 333 114 13 chr3 54338809 54338958 -105260825 - MER67C LTR ERV1 -401 310 147 5 999 1301 261 85 3 chr3 54340294 54340636 -105259147 - ORR1D2 LTR MaLR 0 370 1 5 999 288 247 24 12 chr3 54341219 54341301 -105258482 + GA-rich Low_complexity Low_complexity 4 86 0 5 999 560 252 13 20 chr3 54342313 54342450 -105257333 + RSINE1 SINE B4 4 140 -25 5 999 333 0 0 0 chr3 54342450 54342487 -105257296 + (CA)n Simple_repeat Simple_repeat 1 37 0 5 999 560 252 13 20 chr3 54342487 54342499 -105257284 + RSINE1 SINE B4 141 152 -13 5 999 1899 108 105 23 chr3 54342509 54342813 -105256970 + ORR1A4 LTR MaLR 1 329 0 5 999 1164 261 60 15 chr3 54343200 54343535 -105256248 + ORR1E LTR MaLR 6 355 -4 5 999 2178 117 28 0 chr3 54344152 54344469 -105255314 - ORR1A3 LTR MaLR 0 326 1 5 999 1419 199 147 24 chr3 54344714 54345054 -105254729 + ORR1C2 LTR MaLR 1 382 -2 5 999 1121 263 48 35 chr3 54345906 54346217 -105253566 - Lx6 LINE L1 -173 7287 6973 5 999 342 0 0 0 chr3 54346540 54346578 -105253205 + (TC)n Simple_repeat Simple_repeat 2 39 0 5 999 471 181 0 0 chr3 54346578 54346807 -105252976 + (TG)n Simple_repeat Simple_repeat 1 229 0 5 999 731 264 17 1 chr3 54346807 54347008 -105252775 - B3A SINE B2 -13 203 1 5 999 283 318 46 10 chr3 54347604 54347727 -105252056 - B1F SINE Alu -14 135 10 5 999 847 252 24 5 chr3 54348465 54348676 -105251107 + B3 SINE B2 2 216 0 5 999 383 250 83 0 chr3 54349580 54349688 -105250095 + PB1D10 SINE Alu 1 117 0 5 999 280 224 194 9 chr3 54350459 54350567 -105249216 + MIR SINE MIR 70 197 -65 5 999 534 277 27 7 chr3 54350777 54350926 -105248857 + B3A SINE B2 1 152 -46 5 999 351 0 0 0 chr3 54350927 54350966 -105248817 + (CA)n Simple_repeat Simple_repeat 2 40 0 5 999 297 282 12 25 chr3 54351335 54351415 -105248368 + ID4_ SINE ID 1 79 -4 5 999 395 306 189 33 chr3 54352016 54352557 -105247226 + L1MEg LINE L1 665 1289 -4953 5 999 228 211 0 0 chr3 54352685 54352756 -105247027 + GA-rich Low_complexity Low_complexity 2 72 0 5 999 238 280 168 29 chr3 54353403 54353576 -105246207 + L1MEg LINE L1 4394 4590 -1556 5 999 542 276 165 9 chr3 54353940 54354152 -105245631 + MTD LTR MaLR 175 419 0 5 999 246 282 14 0 chr3 54354165 54354236 -105245547 + (CA)n Simple_repeat Simple_repeat 1 72 0 5 999 553 140 19 9 chr3 54354453 54354561 -105245222 + GA-rich Low_complexity Low_complexity 4 112 0 5 999 1445 209 15 43 chr3 54354563 54354954 -105244829 - RMER17C LTR ERVK -30 380 1 5 999 789 157 100 24 chr3 54355152 54355322 -105244461 + B3 SINE B2 3 185 -31 5 999 267 31 0 0 chr3 54355322 54355354 -105244429 + (TA)n Simple_repeat Simple_repeat 2 33 0 5 999 966 166 0 0 chr3 54357629 54357804 -105241979 + GA-rich Low_complexity Low_complexity 4 178 0 5 999 573 292 71 0 chr3 54357833 54357987 -105241796 - B3A SINE B2 -32 166 2 5 999 624 275 79 10 chr3 54358649 54358851 -105240932 + B3 SINE B2 1 216 0 5 999 21 0 0 0 chr3 54358851 54358872 -105240911 + AT_rich Low_complexity Low_complexity 1 21 0 5 999 945 104 0 0 chr3 54358920 54359064 -105240719 + (GA)n Simple_repeat Simple_repeat 1 144 0 5 999 765 58 0 0 chr3 54359162 54359265 -105240518 - B1_Mus2 SINE Alu -2 145 43 5 999 268 224 0 17 chr3 54359218 54359277 -105240506 - 4.5SRNA scRNA scRNA -8 86 29 5 999 246 268 42 112 chr3 54359520 54359534 -105240249 + MIR SINE MIR 117 130 -132 5 999 717 219 121 10 chr3 54359534 54359732 -105240051 + ID_B1 SINE B4 5 224 0 5 999 246 268 42 112 chr3 54359732 54359860 -105239923 + MIR SINE MIR 131 249 -13 5 999 976 249 48 63 chr3 54360006 54360357 -105239426 + ORR1E LTR MaLR 14 359 0 5 999 1568 211 85 11 chr3 54360656 54361020 -105238763 + MTD LTR MaLR 1 391 -28 5 999 459 254 173 22 chr3 54361800 54361985 -105237798 + B3 SINE B2 1 213 -3 5 999 1864 241 53 8 chr3 54362429 54362915 -105236868 + Lx7 LINE L1 6853 7360 -336 5 999 225 145 48 0 chr3 54364415 54364477 -105235306 + GA-rich Low_complexity Low_complexity 1 65 0 5 999 2261 148 54 0 chr3 54364853 54365244 -105234539 - MTC LTR MaLR -7 414 3 5 999 2297 185 108 94 chr3 54365512 54366115 -105233668 - RMER19C LTR ERVK 0 611 1 5 999 217 196 68 51 chr3 54366270 54366329 -105233454 + ID4_ SINE ID 22 81 -2 5 999 708 12 0 0 chr3 54366717 54366798 -105232985 + (GAA)n Simple_repeat Simple_repeat 2 82 0 5 999 2972 45 0 0 chr3 54367071 54367427 -105232356 + L1Md_T LINE L1 6227 6582 0 5 999 236 30 30 0 chr3 54367524 54367557 -105232226 + (GAAAA)n Simple_repeat Simple_repeat 2 35 0 5 999 539 321 48 63 chr3 54368539 54368888 -105230895 - MLT2B1 LTR ERVL -1 566 223 5 999 346 200 122 92 chr3 54369322 54369539 -105230244 - Lx7 LINE L1 -18 7678 7353 5 999 1657 236 3 0 chr3 54369557 54369870 -105229913 - Lx7 LINE L1 -863 6833 6520 5 999 697 246 43 24 chr3 54370271 54370479 -105229304 - B3 SINE B2 -4 212 1 5 999 25 0 0 0 chr3 54370494 54370519 -105229264 + AT_rich Low_complexity Low_complexity 1 25 0 5 999 196 28 0 77 chr3 54372365 54372404 -105227379 + (CAAAAA)n Simple_repeat Simple_repeat 4 39 0 5 999 1054 51 0 0 chr3 54372991 54373129 -105226654 + B1_Mus1 SINE Alu 11 148 0 5 999 3895 57 45 0 chr3 54373183 54373673 -105226110 + LTRIS3 LTR ERV1 1 512 0 5 999 1131 255 78 18 chr3 54374048 54374432 -105225351 - MTD LTR MaLR 0 419 13 5 999 420 198 31 10 chr3 54374533 54374630 -105225153 - B3 SINE B2 -5 211 113 5 999 308 200 71 0 chr3 54375113 54375198 -105224585 + ORR1D2 LTR MaLR 4 94 -276 5 999 462 261 113 18 chr3 54375227 54375395 -105224388 + ORR1D2 LTR MaLR 169 352 -18 5 999 216 0 0 0 chr3 54375397 54375421 -105224362 + (TGGGGG)n Simple_repeat Simple_repeat 6 29 0 5 999 442 135 0 33 chr3 54376083 54376175 -105223608 + CT-rich Low_complexity Low_complexity 5 93 0 5 999 546 246 11 8 chr3 54376266 54376420 -105223363 + B3A SINE B2 45 201 -15 5 999 414 204 0 0 chr3 54376423 54376536 -105223247 + (CA)n Simple_repeat Simple_repeat 2 114 0 5 999 445 258 160 6 chr3 54376970 54377126 -105222657 - B3A SINE B2 -18 180 1 5 999 1008 136 19 29 chr3 54377837 54378146 -105221637 + (TG)n Simple_repeat Simple_repeat 1 305 0 5 999 537 326 52 72 chr3 54378179 54378430 -105221353 - B4A SINE B4 0 292 47 5 999 856 228 44 19 chr3 54378902 54379108 -105220675 + B3 SINE B2 1 211 -5 5 999 1062 55 0 0 chr3 54380917 54381045 -105218738 - B1_Mus2 SINE Alu -18 129 2 5 999 22 0 0 0 chr3 54381062 54381084 -105218699 + AT_rich Low_complexity Low_complexity 1 22 0 5 999 2452 268 99 26 chr3 54381146 54382084 -105217699 - Lx8 LINE L1 -5 7468 6462 5 999 556 333 70 54 chr3 54382175 54382603 -105217180 - Charlie2a DNA MER1_type -725 2136 1702 5 999 1772 153 79 0 chr3 54383296 54383636 -105216147 - ORR1C1 LTR MaLR 0 378 12 5 999 426 298 126 39 chr3 54383655 54383733 -105216050 - B4A SINE B4 -66 226 136 5 999 180 0 0 0 chr3 54383733 54383753 -105216030 + (TCTCTG)n Simple_repeat Simple_repeat 1 20 0 5 999 426 298 126 39 chr3 54383753 54383880 -105215903 - B4A SINE B4 -157 135 3 5 999 30 27 0 0 chr3 54384019 54384056 -105215727 + AT_rich Low_complexity Low_complexity 1 37 0 5 999 950 197 59 5 chr3 54384344 54384548 -105215235 + B3 SINE B2 2 216 0 5 999 495 0 0 0 chr3 54384777 54384832 -105214951 + (TC)n Simple_repeat Simple_repeat 2 56 0 5 999 2052 88 77 66 chr3 54385207 54385510 -105214273 + Lx LINE L1 6225 6518 -136 5 999 195 42 0 0 chr3 54385510 54385534 -105214249 + (TGGG)n Simple_repeat Simple_repeat 2 25 0 5 999 2052 88 77 66 chr3 54385534 54385593 -105214190 + Lx LINE L1 6519 6589 -65 5 999 21 57 0 0 chr3 54385704 54385739 -105214044 + AT_rich Low_complexity Low_complexity 1 35 0 5 999 285 217 112 25 chr3 54387206 54387378 -105212405 - L1M4b LINE L1 -3917 3089 2944 5 999 213 39 0 0 chr3 54387463 54387489 -105212294 + (CAGA)n Simple_repeat Simple_repeat 2 27 0 5 999 306 50 0 0 chr3 54387578 54387618 -105212165 + (GA)n Simple_repeat Simple_repeat 1 40 0 5 999 228 324 32 45 chr3 54388711 54388866 -105210917 - MIR SINE MIR -1 261 109 5 999 1921 113 9 59 chr3 54389596 54389935 -105209848 - RLTRETN_Mm LTR ERVK 0 322 1 5 999 1313 94 28 0 chr3 54390109 54390290 -105209493 - B2_Mm1t SINE B2 -6 187 2 5 999 1005 304 87 44 chr3 54390295 54390835 -105208948 - Lx9 LINE L1 -6 7638 7076 5 999 315 0 0 0 chr3 54391178 54391213 -105208570 + (A)n Simple_repeat Simple_repeat 1 35 0 5 999 445 325 65 0 chr3 54392566 54392734 -105207049 + MLT1A0 LTR MaLR 115 293 -72 6 999 294 319 8 49 chr3 54392734 54392856 -105206927 + PB1D10 SINE Alu 1 117 0 6 999 792 94 0 0 chr3 54392921 54393049 -105206734 + (TG)n Simple_repeat Simple_repeat 1 128 0 6 999 360 196 215 0 chr3 54393054 54393189 -105206594 - B3A SINE B2 -34 164 1 6 999 222 288 0 0 chr3 54393200 54393259 -105206524 - ID4 SINE ID -2 81 23 6 999 3347 109 16 0 chr3 54393404 54393892 -105205891 + L1_Mus4 LINE L1 6141 6636 0 6 999 237 288 125 0 chr3 54393941 54394021 -105205762 + L1MCa LINE L1 244 333 -6418 6 999 409 296 131 27 chr3 54394051 54394311 -105205472 + L1MCa LINE L1 461 747 -6004 6 999 261 0 0 0 chr3 54394324 54394353 -105205430 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 6 999 1400 34 0 22 chr3 54394361 54394543 -105205240 - L1Md_F2 LINE L1 -11 6571 6394 6 999 228 231 0 0 chr3 54394660 54394712 -105205071 + L1MCa LINE L1 920 971 -5074 6 124 766 266 104 34 chr3 54394726 54395138 -105204645 + L1MCa LINE L1 3014 3454 -3110 6 1000 844 206 10 80 chr3 54395145 54395345 -105204438 + B3 SINE B2 1 186 -9 6 1000 902 99 0 7 chr3 54395692 54395834 -105203949 + B1_Mus1 SINE Alu 6 146 -2 6 1000 189 357 14 28 chr3 54397482 54397508 -105202275 + MIR SINE MIR 117 140 -122 6 1000 270 81 0 0 chr3 54397508 54397545 -105202238 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 6 1000 189 357 14 28 chr3 54397545 54397662 -105202121 + MIR SINE MIR 141 258 -4 6 1000 308 244 13 0 chr3 54397823 54397901 -105201882 + B1_Mur2 SINE Alu 66 144 -5 6 1000 908 176 133 83 chr3 54397913 54397943 -105201840 - B3 SINE B2 -10 185 152 6 1000 570 15 0 0 chr3 54397943 54398010 -105201773 + (TG)n Simple_repeat Simple_repeat 1 67 0 6 1000 908 178 0 6 chr3 54398010 54398159 -105201624 - B3 SINE B2 -65 151 3 6 1000 796 218 24 44 chr3 54399190 54399396 -105200387 + B3 SINE B2 6 207 -9 6 1000 492 209 0 0 chr3 54400261 54400438 -105199345 + (CA)n Simple_repeat Simple_repeat 2 178 0 6 1000 355 260 0 25 chr3 54400487 54400808 -105198975 + (CAGAGA)n Simple_repeat Simple_repeat 1 312 0 6 1000 426 185 200 8 chr3 54400820 54400940 -105198843 + B1_Mm SINE Alu 3 145 -2 6 1000 1801 110 72 0 chr3 54400990 54401280 -105198503 - MTC LTR MaLR 0 421 111 6 1000 430 242 138 76 chr3 54401347 54401557 -105198226 - ID_B1 SINE B4 -1 223 1 6 1000 339 340 159 41 chr3 54402137 54402622 -105197161 - MLT1F2 LTR MaLR -9 551 10 6 1000 1924 198 99 39 chr3 54402921 54403436 -105196347 - RLTR40 LTR ERVK -1 816 271 6 1000 1602 152 3 3 chr3 54403859 54404143 -105195640 - RLTR40 LTR ERVK -533 284 1 6 1000 21 0 0 0 chr3 54404266 54404287 -105195496 + AT_rich Low_complexity Low_complexity 1 21 0 6 1000 1347 76 38 0 chr3 54404292 54404476 -105195307 + B2_Mm1a SINE B2 1 191 -2 6 1000 491 316 0 37 chr3 54404838 54405002 -105194781 + B3 SINE B2 1 158 -58 6 1000 476 32 16 0 chr3 54405016 54405078 -105194705 + (CA)n Simple_repeat Simple_repeat 2 64 0 6 1000 23 0 0 0 chr3 54405554 54405577 -105194206 + AT_rich Low_complexity Low_complexity 1 23 0 6 1000 2858 109 16 34 chr3 54405966 54406460 -105193323 + RMER6A LTR ERVK 3 487 -269 6 1000 2455 85 11 29 chr3 54406534 54406911 -105192872 + L1_Mus3 LINE L1 6269 6638 0 6 1000 764 111 0 8 chr3 54407230 54407357 -105192426 + (TG)n Simple_repeat Simple_repeat 2 127 0 6 1000 285 174 247 65 chr3 54407608 54407744 -105192039 - Lx7 LINE L1 -1645 5815 5659 6 1000 2425 217 152 49 chr3 54408070 54408864 -105190919 + Lx7 LINE L1 6821 7696 0 6 1000 2727 84 43 12 chr3 54409173 54409572 -105190211 - RLTR10A LTR ERVK 0 411 1 6 1000 610 129 40 0 chr3 54409614 54409715 -105190068 + B3 SINE B2 3 107 -109 6 1000 396 0 0 0 chr3 54409716 54409760 -105190023 + (TG)n Simple_repeat Simple_repeat 2 45 0 6 1000 1526 155 78 97 chr3 54410446 54410518 -105189265 - ORR1B2 LTR MaLR 0 367 296 6 1000 1746 178 94 0 chr3 54410518 54410790 -105188993 + ORR1B2 LTR MaLR 5 302 -65 6 1000 207 0 0 0 chr3 54410790 54410813 -105188970 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 6 1000 1746 178 94 0 chr3 54410813 54410871 -105188912 + ORR1B2 LTR MaLR 303 365 -2 6 1000 1526 155 78 97 chr3 54410871 54411170 -105188613 - ORR1B2 LTR MaLR -72 295 3 6 1000 371 300 73 0 chr3 54411593 54411703 -105188080 + B1F1 SINE Alu 2 119 -30 6 1000 585 336 31 62 chr3 54411762 54411848 -105187935 - B4A SINE B4 -8 284 204 6 1000 342 0 0 0 chr3 54411848 54411886 -105187897 + (TG)n Simple_repeat Simple_repeat 2 39 0 6 1000 585 336 31 62 chr3 54411886 54412059 -105187724 - B4A SINE B4 -89 203 33 6 1000 2037 153 20 14 chr3 54412270 54412622 -105187161 + ORR1B2 LTR MaLR 6 359 -8 6 1000 1128 93 93 0 chr3 54413659 54413831 -105185952 - B2_Mm1t SINE B2 -4 189 2 6 1000 337 304 79 8 chr3 54414063 54414189 -105185594 + B3 SINE B2 69 203 -13 6 1000 357 114 42 34 chr3 54414770 54414888 -105184895 + (TA)n Simple_repeat Simple_repeat 2 120 0 6 1000 414 0 0 0 chr3 54415108 54415154 -105184629 + (CA)n Simple_repeat Simple_repeat 2 47 0 6 1000 872 183 43 27 chr3 54415882 54416067 -105183716 - B2_Mm2 SINE B2 -6 189 2 6 1000 489 217 83 30 chr3 54416075 54416208 -105183575 - B1_Mur2 SINE Alu -5 144 5 6 1000 595 267 77 24 chr3 54416237 54416406 -105183377 - B3A SINE B2 -19 179 2 6 1000 245 270 44 115 chr3 54417135 54417248 -105182535 + PB1D7 SINE Alu 1 105 -15 6 1000 254 164 18 0 chr3 54417249 54417304 -105182479 + GA-rich Low_complexity Low_complexity 1 56 0 6 1000 32 43 0 0 chr3 54417351 54417397 -105182386 + AT_rich Low_complexity Low_complexity 1 46 0 6 1000 214 244 24 12 chr3 54417469 54417552 -105182231 + (TA)n Simple_repeat Simple_repeat 2 85 0 6 1000 679 297 51 40 chr3 54417948 54418358 -105181425 - L1MA5A LINE L1 -1534 5926 5546 6 1000 242 264 238 8 chr3 54418544 54418570 -105181213 - Lx7 LINE L1 -5 7455 7422 6 1000 387 0 0 0 chr3 54418570 54418613 -105181170 + (CA)n Simple_repeat Simple_repeat 2 44 0 6 1000 335 205 232 10 chr3 54418613 54418713 -105181070 - Lx7 LINE L1 -27 7669 7549 6 1000 1188 94 6 0 chr3 54418719 54418889 -105180894 + B2_Mm1t SINE B2 1 171 -22 6 1000 418 57 319 71 chr3 54418950 54419063 -105180720 + B2_Mm2 SINE B2 47 187 -8 6 1000 245 29 29 0 chr3 54419073 54419107 -105180676 + (TAAAA)n Simple_repeat Simple_repeat 2 36 0 6 1000 454 218 18 66 chr3 54419110 54419223 -105180560 - Lx7 LINE L1 -173 7523 7412 6 1000 183 42 0 0 chr3 54419223 54419247 -105180536 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 6 1000 454 218 18 66 chr3 54419247 54419300 -105180483 - Lx7 LINE L1 -285 7411 7365 6 1000 1366 91 38 0 chr3 54419326 54419512 -105180271 + B2_Mm2 SINE B2 2 194 -1 6 1000 194 72 33 67 chr3 54419513 54419573 -105180210 + A-rich Low_complexity Low_complexity 3 60 0 6 1000 6308 217 66 37 chr3 54419600 54421201 -105178582 - Lx7 LINE L1 -328 7368 5722 6 1000 1029 208 10 5 chr3 54421201 54421399 -105178384 - ORR1C1-int LTR MaLR -450 1059 861 6 1000 4527 125 45 8 chr3 54421505 54422214 -105177569 + RMER19A LTR ERVK 3 737 0 6 1000 1236 151 238 7 chr3 54422220 54422527 -105177256 - ORR1C1 LTR MaLR 0 378 1 6 1000 415 267 138 0 chr3 54423003 54423119 -105176664 + ID_B1 SINE B4 84 215 -9 6 1000 1051 236 5 0 chr3 54423130 54423338 -105176445 + B3 SINE B2 2 210 -6 6 1000 248 280 173 0 chr3 54424204 54424279 -105175504 + B1F SINE Alu 3 90 -59 6 1000 1936 128 89 53 chr3 54424421 54424801 -105174982 - ORR1B1 LTR MaLR 0 394 1 6 1000 1228 48 0 13 chr3 54424839 54424988 -105174795 - B1_Mus1 SINE Alu 0 148 2 6 1000 2016 113 46 43 chr3 54425031 54425356 -105174427 - ORR1A3 LTR MaLR 0 326 1 6 1000 180 0 0 0 chr3 54425523 54425543 -105174240 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 6 1000 828 243 127 39 chr3 54425762 54426045 -105173738 - ORR1D2 LTR MaLR -61 309 2 6 1000 1408 94 5 10 chr3 54426235 54426429 -105173354 + B2_Mm1a SINE B2 1 193 0 6 1000 293 275 2 115 chr3 54426527 54426671 -105173112 - B3A SINE B2 0 216 84 6 1000 213 121 0 0 chr3 54426700 54426733 -105173050 + (A)n Simple_repeat Simple_repeat 1 33 0 6 1000 326 265 10 58 chr3 54426736 54426840 -105172943 - PB1D10 SINE Alu -13 104 6 6 1000 2758 75 66 13 chr3 54426841 54427205 -105172578 + MTB LTR MaLR 3 390 -10 6 1000 1103 82 0 7 chr3 54427205 54427342 -105172441 + B1_Mus2 SINE Alu 1 137 -10 6 1000 216 0 0 0 chr3 54427342 54427366 -105172417 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 6 1000 2758 75 66 13 chr3 54427376 54427389 -105172394 + MTB LTR MaLR 391 400 0 6 1000 24 85 0 0 chr3 54427399 54427458 -105172325 + AT_rich Low_complexity Low_complexity 1 59 0 6 1000 398 281 25 42 chr3 54427470 54427589 -105172194 + PB1D10 SINE Alu 1 117 0 6 1000 4169 92 37 5 chr3 54427855 54428421 -105171362 - MT2B2 LTR ERVL 0 584 1 6 1000 1536 118 18 73 chr3 54428520 54428794 -105170989 - ORR1A4 LTR MaLR -52 277 19 6 1000 1938 150 31 17 chr3 54428884 54429237 -105170546 + ORR1B2 LTR MaLR 1 358 -9 6 1000 485 179 118 17 chr3 54429357 54429476 -105170307 - MTEb LTR MaLR -2 377 247 6 1000 455 229 81 91 chr3 54429838 54430035 -105169748 + B3A SINE B2 4 198 0 6 1000 3451 124 0 62 chr3 54430038 54430497 -105169286 + Lx5 LINE L1 5347 5785 -92 6 1000 903 83 105 0 chr3 54430497 54430630 -105169153 + B1_Mus2 SINE Alu 1 147 0 6 1000 297 0 0 0 chr3 54430634 54430667 -105169116 + (CA)n Simple_repeat Simple_repeat 2 34 0 6 1000 3451 185 56 59 chr3 54430667 54431241 -105168542 + Lx5 LINE L1 5786 6445 -552 6 1000 320 186 118 17 chr3 54431238 54431372 -105168411 + Lx5 LINE L1 6906 7056 -2 6 1000 453 154 22 0 chr3 54431835 54431926 -105167857 - B3 SINE B2 -123 93 1 6 1000 755 168 0 8 chr3 54431977 54432109 -105167674 - B1_Mur3 SINE Alu -1 148 18 6 1000 696 226 58 37 chr3 54432412 54432600 -105167183 - ID_B1 SINE B4 -31 193 2 6 1000 315 0 0 0 chr3 54432824 54432859 -105166924 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 6 1000 1159 50 0 0 chr3 54432859 54432998 -105166785 - B1_Mus1 SINE Alu -9 139 1 6 1000 562 250 6 58 chr3 54433003 54433177 -105166606 + B3A SINE B2 34 198 0 6 1000 688 228 15 0 chr3 54433243 54433379 -105166404 + B1_Mur1 SINE Alu 5 142 -7 6 1000 183 42 0 0 chr3 54433379 54433403 -105166380 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 6 1000 485 45 0 29 chr3 54433741 54433810 -105165973 + (TTTC)n Simple_repeat Simple_repeat 2 68 0 7 1000 209 33 33 0 chr3 54433854 54433884 -105165899 + (TTG)n Simple_repeat Simple_repeat 2 32 0 7 1000 939 132 0 0 chr3 54433884 54434020 -105165763 - B1_Mur4 SINE Alu -10 140 5 7 1000 272 246 43 0 chr3 54434738 54434807 -105164976 + ID_B1 SINE B4 144 215 -9 7 1000 360 0 0 0 chr3 54434807 54434847 -105164936 + (TATG)n Simple_repeat Simple_repeat 2 41 0 7 1000 221 247 179 13 chr3 54435522 54435600 -105164183 + PB1D7 SINE Alu 1 91 -29 7 1000 23 68 0 0 chr3 54436037 54436081 -105163702 + AT_rich Low_complexity Low_complexity 1 44 0 7 1000 525 32 0 0 chr3 54438012 54438075 -105161708 + (CTG)n Simple_repeat Simple_repeat 1 63 0 7 1000 254 190 44 77 chr3 54438861 54438952 -105160831 - Lx8 LINE L1 -121 7352 7265 7 1000 266 274 24 0 chr3 54439001 54439085 -105160698 + CT-rich Low_complexity Low_complexity 4 89 0 7 1000 1070 67 0 0 chr3 54439506 54439640 -105160143 + B1_Mus1 SINE Alu 1 134 -14 7 1000 2527 206 42 45 chr3 54439778 54440581 -105159202 - L1_Rod LINE L1 -786 5357 4610 7 1000 234 0 0 0 chr3 54440748 54440774 -105159009 + (TTTA)n Simple_repeat Simple_repeat 1 26 0 7 1000 5305 89 109 26 chr3 54440774 54441610 -105158173 - Lx3_Mus LINE L1 -19 6990 6084 7 1000 8433 61 4 22 chr3 54441610 54442388 -105157395 + Lx3_Mus LINE L1 4803 5581 -305 7 1000 1185 74 0 0 chr3 54442388 54442536 -105157247 + B1_Mus1 SINE Alu 1 148 0 7 1000 8433 53 0 21 chr3 54442536 54443029 -105156754 + Lx3_Mus LINE L1 5582 6046 -963 7 1000 400 282 103 21 chr3 54443375 54443520 -105156263 - L1_Mur2 LINE L1 -1305 4572 4416 7 1000 617 74 222 32 chr3 54443552 54443678 -105156105 - B2_Mm2 SINE B2 0 195 46 7 1000 476 224 77 8 chr3 54443800 54443917 -105155866 - ID_B1 SINE B4 0 224 100 7 1000 600 84 0 0 chr3 54444049 54444132 -105155651 + (CTTA)n Simple_repeat Simple_repeat 2 84 0 7 1000 461 264 36 134 chr3 54444173 54444396 -105155387 + MTE2a LTR MaLR 16 216 -163 7 1000 264 53 33 50 chr3 54444397 54444457 -105155326 + (TTTTG)n Simple_repeat Simple_repeat 2 60 0 7 1000 1063 58 51 0 chr3 54444467 54444604 -105155179 - B1_Mm SINE Alu -2 145 2 7 1000 550 336 52 5 chr3 54444609 54444821 -105154962 - ID_B1 SINE B4 -2 222 1 7 1000 783 277 116 7 chr3 54444893 54445196 -105154587 + MTE2b LTR MaLR 34 379 0 7 1000 2828 78 54 0 chr3 54445421 54445830 -105153953 - MT2B2 LTR ERVL 0 584 154 7 1000 4022 100 3 7 chr3 54445836 54446402 -105153381 - L1Md_F2 LINE L1 0 6582 6019 7 1000 243 86 0 0 chr3 54446412 54446447 -105153336 - MT2B2 LTR ERVL -416 168 134 7 1000 1486 71 6 0 chr3 54446578 54446761 -105153022 + B2_Mm1t SINE B2 2 185 -8 7 1000 396 0 0 0 chr3 54447754 54447798 -105151985 + (TC)n Simple_repeat Simple_repeat 1 44 0 7 1000 355 164 15 0 chr3 54448054 54448121 -105151662 + ID_B1 SINE B4 145 212 -12 7 1000 378 0 0 0 chr3 54448136 54448178 -105151605 + (TAAA)n Simple_repeat Simple_repeat 3 44 0 7 1000 582 254 18 115 chr3 54448351 54448569 -105151214 + B3A SINE B2 2 198 0 7 1000 1221 114 11 6 chr3 54448573 54448750 -105151033 + B2_Mm1t SINE B2 2 179 -14 7 1000 306 141 10 3 chr3 54448824 54448885 -105150898 + B2_Mm2 SINE B2 46 108 -90 7 1000 384 319 50 0 chr3 54449017 54449136 -105150647 + MLT1C LTR MaLR 343 467 0 7 1000 781 284 106 16 chr3 54450013 54450475 -105149308 + Lx7 LINE L1 5657 6155 -1318 7 1000 183 186 0 0 chr3 54450901 54450944 -105148839 + (CA)n Simple_repeat Simple_repeat 2 44 0 7 1000 262 225 26 78 chr3 54452043 54452120 -105147663 - ID4_ SINE ID -6 77 5 7 1000 21 0 0 0 chr3 54452619 54452640 -105147143 + AT_rich Low_complexity Low_complexity 1 21 0 7 1000 2881 185 38 9 chr3 54453492 54454049 -105145734 - RMER15 LTR ERVL 0 575 3 7 1000 245 158 0 66 chr3 54454501 54454562 -105145221 + (CATATA)n Simple_repeat Simple_repeat 3 59 0 7 1000 1702 158 82 14 chr3 54454740 54455094 -105144689 - ORR1C1 LTR MaLR 0 378 1 7 1000 225 186 0 0 chr3 54456351 54456394 -105143389 - Tigger11a DNA MER2_type -166 569 527 7 1000 361 213 0 122 chr3 54456422 54456529 -105143254 + PB1D9 SINE Alu 17 110 -10 7 1000 638 307 21 0 chr3 54457012 54457204 -105142579 + B3A SINE B2 1 196 -2 7 1000 3147 70 18 0 chr3 54457228 54457628 -105142155 - MTB_Mm LTR MaLR 0 407 1 7 1000 337 342 63 16 chr3 54457710 54457900 -105141883 + MLT2D LTR ERVL 162 360 -54 7 1000 633 243 0 26 chr3 54458103 54458255 -105141528 - B1F2 SINE Alu -1 148 1 7 1000 687 286 68 27 chr3 54458718 54459013 -105140770 - MTE2b LTR MaLR -72 307 1 7 1000 196 200 0 0 chr3 54461564 54461604 -105138179 - MIRc SINE MIR -113 155 116 7 1000 363 202 37 75 chr3 54462452 54462559 -105137224 + B1_Mur2 SINE Alu 28 130 -19 7 1000 501 17 0 0 chr3 54462564 54462622 -105137161 + (GA)n Simple_repeat Simple_repeat 1 58 0 7 1000 231 36 0 0 chr3 54462623 54462651 -105137132 + (GGAA)n Simple_repeat Simple_repeat 1 28 0 7 1000 244 264 44 44 chr3 54462953 54463044 -105136739 - MLT1A1 LTR MaLR -23 385 295 7 1000 7361 208 39 37 chr3 54463140 54464364 -105135419 - Lx6 LINE L1 -164 7532 6031 7 1000 4497 92 0 0 chr3 54464364 54464948 -105134835 - MT2B2 LTR ERVL 0 584 1 7 1000 7361 156 46 23 chr3 54464948 54465766 -105134017 - Lx6 LINE L1 -1430 6030 5222 7 1000 2350 195 77 20 chr3 54465826 54466322 -105133461 - RMER1C Other Other 0 1342 819 7 1000 15105 154 64 17 chr3 54466574 54468660 -105131123 - Lx6 LINE L1 -635 5245 3077 7 1000 299 25 25 0 chr3 54468660 54468700 -105131083 + (TG)n Simple_repeat Simple_repeat 2 42 0 7 1000 15105 154 64 17 chr3 54468700 54469525 -105130258 - Lx6 LINE L1 -2804 3076 2199 7 1000 517 270 28 70 chr3 54470857 54471072 -105128711 + L1MC1 LINE L1 6126 6331 -2 7 1000 290 26 0 25 chr3 54471258 54471298 -105128485 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 7 1000 475 228 15 45 chr3 54471298 54471431 -105128352 - B1_Mus2 SINE Alu -10 137 9 7 1000 382 235 111 0 chr3 54471505 54471586 -105128197 + PB1D10 SINE Alu 12 101 -16 7 1000 25 0 0 0 chr3 54471634 54471659 -105128124 + AT_rich Low_complexity Low_complexity 1 25 0 7 1000 315 278 21 161 chr3 54471970 54472163 -105127620 + Charlie12 DNA MER1_type 7 172 -2701 7 1000 246 247 108 0 chr3 54472096 54472189 -105127594 - RMER30 DNA MER1_type -92 110 8 7 1000 1819 160 44 65 chr3 54472404 54472791 -105126992 - ORR1C2 LTR MaLR 0 384 6 7 1000 180 368 23 0 chr3 54472952 54473039 -105126744 + MIRb SINE MIR 172 260 -8 7 1000 385 282 18 9 chr3 54473598 54473709 -105126074 + RSINE1 SINE B4 3 114 -51 7 1000 311 246 0 0 chr3 54473717 54473786 -105125997 + B1_Mur3 SINE Alu 2 70 -79 7 1000 69 13 0 0 chr3 54473825 54473901 -105125882 + AT_rich Low_complexity Low_complexity 1 76 0 7 1000 1215 62 0 0 chr3 54473947 54474093 -105125690 - B1_Mus1 SINE Alu 0 148 3 7 1000 277 340 68 0 chr3 54474402 54474505 -105125278 + B4A SINE B4 90 199 -93 7 1000 498 206 0 20 chr3 54474418 54474517 -105125266 + PB1D10 SINE Alu 21 117 0 7 1000 201 178 0 0 chr3 54474527 54474572 -105125211 + GA-rich Low_complexity Low_complexity 2 46 0 7 1000 801 216 78 34 chr3 54474581 54474787 -105124996 + B3 SINE B2 1 215 -1 7 1000 1455 251 55 61 chr3 54474920 54475395 -105124388 + Lx6 LINE L1 6980 7451 -9 7 1000 477 256 120 0 chr3 54475482 54475615 -105124168 + B1F2 SINE Alu 1 149 0 7 1000 476 186 78 0 chr3 54475851 54475953 -105123830 + B1F SINE Alu 28 137 -12 7 1000 312 152 0 0 chr3 54477976 54478042 -105121741 + GA-rich Low_complexity Low_complexity 1 66 0 7 1000 462 347 0 7 chr3 54478077 54478222 -105121561 + B1F SINE Alu 1 144 -5 7 1000 360 0 0 0 chr3 54479260 54479300 -105120483 + (CA)n Simple_repeat Simple_repeat 2 41 0 7 1000 310 253 138 0 chr3 54479788 54479875 -105119908 + PB1D10 SINE Alu 6 104 -13 7 1000 280 274 54 14 chr3 54479979 54480053 -105119730 + B1F1 SINE Alu 1 77 -72 7 1000 432 0 0 0 chr3 54480796 54480844 -105118939 + (CA)n Simple_repeat Simple_repeat 1 48 0 7 1000 327 230 71 3 chr3 54480854 54480974 -105118809 - PB1D7 SINE Alu -9 141 14 7 1000 282 333 12 74 chr3 54481652 54481814 -105117969 - MER115 DNA Tip100 -13 680 529 7 1000 351 317 108 0 chr3 54483035 54483155 -105116628 + ID_B1 SINE B4 88 220 -4 7 1000 357 67 0 0 chr3 54483844 54483889 -105115894 + (GGAA)n Simple_repeat Simple_repeat 3 47 0 7 1000 645 161 28 22 chr3 54483889 54484067 -105115716 + GA-rich Low_complexity Low_complexity 1 179 0 7 1000 241 276 40 30 chr3 54485261 54485362 -105114421 + GA-rich Low_complexity Low_complexity 5 106 0 7 1000 999 284 51 35 chr3 54485472 54485844 -105113939 + MTE2a LTR MaLR 1 378 -1 7 1000 216 0 0 0 chr3 54485968 54485992 -105113791 + (CAAG)n Simple_repeat Simple_repeat 3 26 0 7 1000 431 213 0 11 chr3 54486101 54486196 -105113587 - RLTR28B LTR ERVL -295 186 93 7 1000 180 0 0 0 chr3 54486199 54486219 -105113564 + (CA)n Simple_repeat Simple_repeat 1 20 0 7 1000 396 222 24 57 chr3 54486221 54486345 -105113438 + RLTR11B LTR ERVK 32 151 -302 7 1000 270 240 93 0 chr3 54486432 54486507 -105113276 - RLTR28B LTR ERVL -383 98 17 7 1000 480 241 8 25 chr3 54486669 54486788 -105112995 - PB1D10 SINE Alu 0 117 1 7 1000 351 195 26 0 chr3 54487165 54487242 -105112541 + B3A SINE B2 3 81 -117 7 1000 415 323 87 35 chr3 54487799 54488030 -105111753 + MLT1K LTR MaLR 350 592 -3 7 1000 197 108 27 0 chr3 54488082 54488119 -105111664 + (TTCC)n Simple_repeat Simple_repeat 4 41 0 7 1000 226 207 17 33 chr3 54488574 54488634 -105111149 - ID_B1 SINE B4 -75 149 91 7 1000 244 277 135 21 chr3 54489039 54489135 -105110648 + PB1D10 SINE Alu 10 116 -1 8 1000 1126 108 6 0 chr3 54489344 54489510 -105110273 + B2_Mm1t SINE B2 1 167 -26 8 1000 1044 258 110 15 chr3 54490258 54490601 -105109182 - MTE2b LTR MaLR -2 368 2 8 1000 351 0 0 0 chr3 54491282 54491321 -105108462 + (CA)n Simple_repeat Simple_repeat 2 40 0 8 1000 315 0 0 0 chr3 54491627 54491662 -105108121 + (TC)n Simple_repeat Simple_repeat 1 35 0 8 1000 288 0 0 0 chr3 54491662 54491693 -105108090 + (CA)n Simple_repeat Simple_repeat 1 32 0 8 1000 506 198 26 18 chr3 54491699 54491812 -105107971 - B1F2 SINE Alu -4 145 32 8 1000 309 294 54 18 chr3 54491935 54492046 -105107737 + PB1D10 SINE Alu 3 117 0 8 1000 344 232 84 0 chr3 54492308 54492403 -105107380 + PB1D7 SINE Alu 11 113 -7 8 1000 238 215 59 71 chr3 54492422 54492507 -105107276 + ID4_ SINE ID 9 92 -60 8 1000 681 203 7 42 chr3 54492522 54492666 -105107117 - ID_B1 SINE B4 0 224 86 8 1000 270 274 27 14 chr3 54492716 54492790 -105106993 + PB1D10 SINE Alu 14 88 -29 8 1000 923 109 6 0 chr3 54492845 54493001 -105106782 + (TCCA)n Simple_repeat Simple_repeat 3 159 0 8 1000 258 32 0 0 chr3 54493001 54493031 -105106752 + (CCTA)n Simple_repeat Simple_repeat 1 31 0 8 1000 237 175 0 52 chr3 54493038 54493104 -105106679 + MT2B2 LTR ERVL 505 584 0 8 1000 384 258 0 11 chr3 54493362 54493456 -105106327 + ID_B1 SINE B4 84 176 -48 8 1000 1182 55 7 0 chr3 54493616 54493761 -105106022 + B1_Mus1 SINE Alu 2 147 -1 8 1000 1570 145 142 3 chr3 54493777 54494102 -105105681 + RLTR14 LTR ERV1 13 382 0 8 1000 21 57 0 0 chr3 54494144 54494179 -105105604 + AT_rich Low_complexity Low_complexity 1 35 0 8 1000 406 295 28 9 chr3 54495075 54495181 -105104602 + B1_Mur1 SINE Alu 9 116 -33 8 1000 340 231 34 92 chr3 54495587 54495706 -105104077 - PB1D7 SINE Alu -1 119 8 8 1000 1120 55 13 40 chr3 54495873 54496025 -105103758 + B1_Mus1 SINE Alu 1 148 0 8 1000 382 275 65 32 chr3 54496166 54496290 -105103493 + RSINE1 SINE B4 25 152 -13 8 1000 501 51 0 60 chr3 54497809 54497893 -105101890 + L1Md_F2 LINE L1 6501 6579 -3 8 1000 1147 89 0 0 chr3 54497939 54498096 -105101687 + B2_Mm2 SINE B2 2 158 -37 8 1000 198 0 0 0 chr3 54498097 54498119 -105101664 + (TAAA)n Simple_repeat Simple_repeat 3 24 0 8 1000 200 35 35 0 chr3 54498155 54498184 -105101599 + (TAAA)n Simple_repeat Simple_repeat 3 32 0 8 1000 439 316 128 34 chr3 54499448 54499713 -105100070 - B4 SINE B4 -2 290 1 8 1000 438 248 9 26 chr3 54499768 54499884 -105099899 + B1F SINE Alu 24 137 -12 8 1000 207 0 0 0 chr3 54499976 54499999 -105099784 + (GGGTG)n Simple_repeat Simple_repeat 2 24 0 8 1000 24 53 0 0 chr3 54500629 54500667 -105099116 + AT_rich Low_complexity Low_complexity 1 38 0 1 1000 6782 67 47 26 chr3 54501117 54502081 -105097702 - Lx3_Mus LINE L1 0 7009 6026 2 1000 222 189 0 0 chr3 54503464 54503501 -105096282 + polypurine Low_complexity Low_complexity 6 42 0 3 1000 206 148 55 18 chr3 54503651 54503706 -105096077 + (TTG)n Simple_repeat Simple_repeat 2 58 0 4 1000 221 0 0 33 chr3 54503756 54503786 -105095997 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 5 1000 1004 86 43 0 chr3 54503786 54503925 -105095858 - B1_Mus2 SINE Alu -2 145 1 6 1000 584 219 76 0 chr3 54503961 54504080 -105095703 + RSINE1 SINE B4 2 129 -36 7 1000 32 26 0 0 chr3 54504368 54504407 -105095376 + AT_rich Low_complexity Low_complexity 1 39 0 8 1000 232 178 0 0 chr3 54504732 54504777 -105095006 - URR1B DNA MER1_type 0 225 181 9 1000 192 163 0 0 chr3 54504784 54504827 -105094956 + T-rich Low_complexity Low_complexity 1 43 0 1 1000 1165 68 0 13 chr3 54504828 54504977 -105094806 - B1_Mus1 SINE Alu -1 147 1 1 1000 832 149 65 12 chr3 54504978 54505148 -105094635 - URR1B DNA MER1_type -46 179 1 9 1000 334 230 43 75 chr3 54505160 54505254 -105094529 - PB1D10 SINE Alu -20 97 7 1 1000 248 295 38 95 chr3 54505163 54505268 -105094515 - ID_B1 SINE B4 -49 175 77 1 1000 1020 213 19 5 chr3 54505786 54505998 -105093785 - B3 SINE B2 -1 215 1 1 1000 265 250 0 62 chr3 54506061 54506142 -105093641 - RSINE1 SINE B4 -86 79 4 1 1000 364 353 7 22 chr3 54506450 54506589 -105093194 + ID_B1 SINE B4 9 145 -79 1 1000 517 314 25 50 chr3 54506704 54506905 -105092878 - B3A SINE B2 0 198 3 1 1000 392 219 73 0 chr3 54507163 54507245 -105092538 + PB1 SINE Alu 33 120 -7 1 1000 363 291 0 0 chr3 54507253 54507387 -105092396 + (TATATG)n Simple_repeat Simple_repeat 1 134 0 1 1000 392 219 73 0 chr3 54507596 54507678 -105092105 + PB1 SINE Alu 33 120 -7 2 1000 228 219 0 0 chr3 54507682 54507723 -105092060 + (TG)n Simple_repeat Simple_repeat 2 42 0 2 1000 318 290 37 0 chr3 54507751 54507858 -105091925 - PB1D10 SINE Alu 0 117 7 2 1000 2708 127 28 6 chr3 54507891 54508054 -105091729 - RLTR13C1 LTR ERVK 0 983 821 2 1000 1181 62 0 0 chr3 54508054 54508200 -105091583 - B1_Mus2 SINE Alu -1 146 1 2 1000 3232 110 10 8 chr3 54508200 54508918 -105090865 - RLTR13C1 LTR ERVK -163 820 1 2 1000 211 236 194 0 chr3 54509554 54509626 -105090157 + ID_B1 SINE B4 85 170 -54 2 1000 567 0 0 0 chr3 54510555 54510618 -105089165 + (TAAA)n Simple_repeat Simple_repeat 2 64 0 2 1000 192 125 0 0 chr3 54511429 54511461 -105088322 + (TTCC)n Simple_repeat Simple_repeat 3 34 0 2 1000 280 272 74 0 chr3 54511464 54511545 -105088238 - PB1D10 SINE Alu -1 116 30 2 1000 414 39 0 0 chr3 54511547 54511599 -105088184 + (TC)n Simple_repeat Simple_repeat 1 52 0 2 1000 433 320 25 25 chr3 54513779 54513936 -105085847 - RSINE1 SINE B4 -3 162 6 3 1000 449 252 67 8 chr3 54514445 54514565 -105085218 - ID_B1 SINE B4 0 224 98 3 1000 344 248 50 0 chr3 54514756 54514857 -105084926 + PB1D10 SINE Alu 5 110 -7 3 1000 254 315 56 0 chr3 54514867 54514975 -105084808 + PB1D7 SINE Alu 1 114 -6 3 1000 379 232 35 42 chr3 54515058 54515202 -105084581 - B1F2 SINE Alu -6 143 1 3 1000 742 225 35 7 chr3 54515560 54515703 -105084080 - B1_Mur2 SINE Alu -1 148 2 3 1000 420 183 45 55 chr3 54516503 54516613 -105083170 - B1_Mur1 SINE Alu -13 136 28 3 1000 189 258 16 0 chr3 54517822 54517884 -105081899 + MIRm SINE MIR 95 157 -119 3 1000 228 135 0 0 chr3 54520250 54520287 -105079496 + (T)n Simple_repeat Simple_repeat 1 37 0 3 1000 246 235 258 42 chr3 54521907 54522027 -105077756 - RSINE1 SINE B4 -17 148 3 3 1000 181 0 69 0 chr3 54523281 54523310 -105076473 + (TTG)n Simple_repeat Simple_repeat 3 33 0 4 1000 1249 41 7 0 chr3 54523310 54523457 -105076326 - B1_Mus1 SINE Alu 0 148 1 4 1000 289 180 115 0 chr3 54523703 54523764 -105076019 - B1_Mur4 SINE Alu -8 142 75 4 1000 825 199 0 0 chr3 54523765 54523936 -105075847 + (TA)n Simple_repeat Simple_repeat 1 171 0 4 1000 22 70 0 0 chr3 54524410 54524453 -105075330 + AT_rich Low_complexity Low_complexity 1 43 0 4 1000 261 0 0 0 chr3 54524519 54524548 -105075235 + (TAA)n Simple_repeat Simple_repeat 2 30 0 4 15 326 312 0 52 chr3 54525927 54526042 -105073741 - PB1D10 SINE Alu -8 109 1 4 1001 345 125 0 0 chr3 54526584 54526640 -105073143 + (TG)n Simple_repeat Simple_repeat 2 57 0 4 1001 216 283 50 0 chr3 54527035 54527095 -105072688 - MER5B DNA MER1_type -12 166 104 4 1001 231 200 0 0 chr3 54527157 54527197 -105072586 - L1MC4 LINE L1 -4477 1738 1699 4 1001 213 310 28 14 chr3 54527445 54527517 -105072266 - PB1D7 SINE Alu -3 117 45 5 1001 286 225 125 0 chr3 54527549 54527629 -105072154 - L1MB2 LINE L1 -54 6117 6028 5 1001 198 0 0 0 chr3 54527632 54527654 -105072129 + (TTTTG)n Simple_repeat Simple_repeat 3 24 0 5 1001 574 135 27 149 chr3 54527654 54527802 -105071981 - B1_Mur4 SINE Alu -12 138 9 5 1001 217 234 62 15 chr3 54528210 54528275 -105071508 - ID4 SINE ID -1 82 15 5 1001 257 208 36 90 chr3 54528371 54528482 -105071301 - L1MB2 LINE L1 -820 5358 5254 5 1001 195 80 19 57 chr3 54528611 54528664 -105071119 + T-rich Low_complexity Low_complexity 3 53 0 5 1001 1069 58 58 0 chr3 54528665 54528803 -105070980 - B1_Mm SINE Alu 0 147 2 5 1001 1029 17 0 0 chr3 54528871 54528990 -105070793 + (TTTC)n Simple_repeat Simple_repeat 2 120 0 5 1001 598 187 8 24 chr3 54529041 54529167 -105070616 - B3 SINE B2 -10 206 83 5 1001 1012 45 0 0 chr3 54529167 54529301 -105070482 + B1_Mus1 SINE Alu 15 148 0 5 1001 340 122 0 0 chr3 54529331 54529380 -105070403 - B3 SINE B2 -165 51 3 5 1001 223 140 20 20 chr3 54529621 54529672 -105070111 + T-rich Low_complexity Low_complexity 1 51 0 6 1001 1166 75 0 7 chr3 54530301 54530449 -105069334 - B1_Mus1 SINE Alu 0 148 2 6 1001 352 167 56 0 chr3 54531208 54531280 -105068503 + ID_B1 SINE B4 129 204 -20 6 1001 264 122 0 0 chr3 54531570 54531611 -105068172 + (CAG)n Simple_repeat Simple_repeat 1 41 0 6 1001 457 59 271 47 chr3 54534099 54534206 -105065577 - PB1D9 SINE Alu 0 147 17 6 1001 247 250 140 0 chr3 54534375 54534475 -105065308 - PB1D10 SINE Alu -3 114 1 6 1001 246 274 104 35 chr3 54534790 54534890 -105064893 + PB1D7 SINE Alu 3 108 -9 6 1001 292 238 62 71 chr3 54535614 54535727 -105064056 + PB1D10 SINE Alu 6 117 0 6 1001 23 54 0 0 chr3 54537676 54537713 -105062070 + AT_rich Low_complexity Low_complexity 1 37 0 6 1001 23 33 0 0 chr3 54538858 54538888 -105060895 + GC_rich Low_complexity Low_complexity 1 30 0 6 1001 25 31 0 0 chr3 54539443 54539475 -105060308 + GC_rich Low_complexity Low_complexity 1 32 0 7 1001 1136 50 43 0 chr3 54540500 54540640 -105059143 - B1_Mm SINE Alu 0 147 2 7 1001 1144 82 0 20 chr3 54540869 54541018 -105058765 - B1_Mus2 SINE Alu 0 147 2 7 1001 273 277 48 0 chr3 54541487 54541570 -105058213 - L1MC5 LINE L1 -1181 6780 6694 7 1001 643 202 79 28 chr3 54541598 54541776 -105058007 - B3A SINE B2 0 198 12 7 1001 1133 213 0 18 chr3 54541969 54542189 -105057594 - B3 SINE B2 0 216 1 7 1001 30 21 0 21 chr3 54543666 54543684 -105056099 + AT_rich Low_complexity Low_complexity 1 18 0 7 1001 3125 74 5 5 chr3 54543684 54544091 -105055692 + L1_Mus1 LINE L1 6161 6567 0 7 1001 30 21 0 21 chr3 54544091 54544120 -105055663 + AT_rich Low_complexity Low_complexity 1 29 0 7 1001 347 237 0 0 chr3 54544155 54544231 -105055552 + L1MA9 LINE L1 5966 6041 -271 7 1001 249 246 138 92 chr3 54544525 54544677 -105055106 - B4A SINE B4 -129 163 5 8 1001 371 254 45 78 chr3 54544697 54544851 -105054932 - B1F SINE Alu 0 149 1 8 1001 243 0 0 0 chr3 54545018 54545045 -105054738 + (TA)n Simple_repeat Simple_repeat 1 27 0 8 1001 229 240 60 0 chr3 54545118 54545168 -105054615 + RSINE1 SINE B4 90 142 -23 8 1001 653 279 109 61 chr3 54545495 54545789 -105053994 - MTE2a LTR MaLR -15 364 57 8 1001 257 287 23 0 chr3 54545919 54546006 -105053777 - L1MA4A LINE L1 -8 6295 6207 8 1001 493 211 8 50 chr3 54546733 54546853 -105052930 - PB1D7 SINE Alu 0 120 6 8 1001 288 0 0 0 chr3 54547026 54547058 -105052725 + (TTCA)n Simple_repeat Simple_repeat 3 34 0 8 1001 1159 181 15 5 chr3 54547081 54547286 -105052497 + B3 SINE B2 5 211 -5 8 1001 297 0 0 0 chr3 54547376 54547409 -105052374 + (CA)n Simple_repeat Simple_repeat 1 33 0 8 1001 1195 48 0 0 chr3 54547927 54548072 -105051711 + B1_Mus2 SINE Alu 3 147 0 9 1001 348 255 2 0 chr3 54548739 54548841 -105050942 - B1_Mus2 SINE Alu -15 105 2 9 1001 396 0 0 0 chr3 54550774 54550818 -105048965 + (TG)n Simple_repeat Simple_repeat 2 45 0 9 1001 23 0 0 0 chr3 54553444 54553467 -105046316 + AT_rich Low_complexity Low_complexity 1 23 0 9 1001 3939 172 36 13 chr3 54554052 54554917 -105044866 + ORR1B1-int LTR MaLR 625 1509 0 9 1001 2210 120 51 8 chr3 54554917 54555287 -105044496 + ORR1B1 LTR MaLR 1 386 -8 9 1001 1166 62 0 20 chr3 54555784 54555933 -105043850 - B1_Mus2 SINE Alu 0 147 2 9 1001 288 277 24 12 chr3 54556565 54556649 -105043134 + ORR1E LTR MaLR 1 85 -274 9 1001 1760 194 92 24 chr3 54556676 54557056 -105042727 + MTD LTR MaLR 12 417 -2 9 1001 633 69 0 0 chr3 54557301 54557388 -105042395 + (GAA)n Simple_repeat Simple_repeat 2 88 0 9 1001 310 259 103 69 chr3 54563540 54563685 -105036098 - HAL1-3A_ME LINE L1 -417 2441 2292 9 1001 231 200 15 0 chr3 54563803 54563861 -105035922 + T-rich Low_complexity Low_complexity 11 69 0 1 1001 1187 62 0 0 chr3 54563861 54564006 -105035777 - B1_Mm SINE Alu -2 145 1 1 1001 321 302 42 8 chr3 54564016 54564136 -105035647 - Lx8 LINE L1 -137 7336 7213 1 1001 580 187 9 27 chr3 54564193 54564303 -105035480 - PB1D10 SINE Alu 0 117 10 1 1001 292 238 16 0 chr3 54564249 54564312 -105035471 - B4A SINE B4 -143 149 86 1 1001 1109 274 164 51 chr3 54565887 54566471 -105033312 + Lx8 LINE L1 6824 7473 0 1 1001 1197 175 14 9 chr3 54566493 54566706 -105033077 + B3 SINE B2 3 216 0 1 1001 913 114 0 0 chr3 54566729 54566861 -105032922 + B1_Mur3 SINE Alu 14 145 -4 1 1001 238 281 146 0 chr3 54567287 54567369 -105032414 - PB1D10 SINE Alu -9 108 15 1 1001 243 0 0 0 chr3 54567429 54567456 -105032327 + (CA)n Simple_repeat Simple_repeat 2 28 0 1 1001 2357 67 37 19 chr3 54567553 54567874 -105031909 - ORR1A2 LTR MaLR 0 327 1 1 1001 189 74 0 0 chr3 54568903 54568930 -105030853 + (TTG)n Simple_repeat Simple_repeat 2 28 0 1 1001 557 206 19 9 chr3 54568958 54569066 -105030717 + B3 SINE B2 108 216 0 1 1001 387 0 0 0 chr3 54569377 54569420 -105030363 + (TTTA)n Simple_repeat Simple_repeat 4 46 0 1 1001 1128 77 0 0 chr3 54569421 54569564 -105030219 - B1_Mus1 SINE Alu -4 144 2 1 1001 679 188 134 0 chr3 54569584 54569733 -105030050 - B3 SINE B2 0 216 48 1 1001 675 37 0 0 chr3 54569743 54569825 -105029958 + (TCCC)n Simple_repeat Simple_repeat 1 82 0 1 1001 297 0 0 0 chr3 54570373 54570406 -105029377 + (T)n Simple_repeat Simple_repeat 1 33 0 1 1001 326 286 112 40 chr3 54570534 54570832 -105028951 - L1MB2 LINE L1 -175 6008 5696 1 1001 236 286 157 8 chr3 54570983 54571117 -105028666 - L1MB2 LINE L1 -686 5488 5335 1 1001 829 182 24 92 chr3 54571211 54571375 -105028408 + B2_Mm2 SINE B2 4 163 -32 1 1001 252 0 0 0 chr3 54571375 54571403 -105028380 + (CAAT)n Simple_repeat Simple_repeat 2 29 0 1 1001 829 182 24 92 chr3 54571403 54571444 -105028339 + B2_Mm2 SINE B2 164 195 0 1 1001 216 267 0 0 chr3 54571446 54571491 -105028292 + polypurine Low_complexity Low_complexity 5 49 0 1 1001 504 182 163 16 chr3 54571517 54571640 -105028143 - B1_Mur4 SINE Alu 0 150 10 1 1001 189 0 0 0 chr3 54571651 54571672 -105028111 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 1 1001 291 196 170 80 chr3 54571690 54571790 -105027993 - PB1D10 SINE Alu 0 117 9 1 1001 434 102 0 14 chr3 54571818 54571888 -105027895 + (TTG)n Simple_repeat Simple_repeat 1 69 0 1 1001 529 250 136 6 chr3 54572612 54572781 -105027002 - MER20 DNA MER1_type -1 218 28 1 1001 839 65 0 0 chr3 54572845 54572952 -105026831 + B1_Mus1 SINE Alu 39 145 -3 1 1001 540 0 0 0 chr3 54572952 54573012 -105026771 + (CAA)n Simple_repeat Simple_repeat 2 61 0 1 1001 691 232 42 21 chr3 54574262 54574451 -105025332 - B3A SINE B2 -5 193 1 1 1001 1005 62 0 0 chr3 54574965 54575093 -105024690 + B2_Mm1t SINE B2 64 191 -2 1 1001 324 221 0 14 chr3 54575189 54575258 -105024525 - L1MB2 LINE L1 -1172 4974 4907 1 1001 288 0 0 0 chr3 54575277 54575309 -105024474 + (CA)n Simple_repeat Simple_repeat 1 32 0 1 1001 419 281 41 0 chr3 54575329 54575475 -105024308 + L1M4 LINE L1 5010 5161 -985 1 1001 794 129 83 0 chr3 54575495 54575627 -105024156 - B1_Mus2 SINE Alu 0 147 5 1 1001 712 233 7 7 chr3 54575646 54575793 -105023990 + B1_Mur2 SINE Alu 3 149 0 1 1001 464 0 0 18 chr3 54575860 54575917 -105023866 + (CA)n Simple_repeat Simple_repeat 1 56 0 1 1001 351 327 8 68 chr3 54575960 54576078 -105023705 + PB1D10 SINE Alu 6 116 -1 1 1001 475 327 18 26 chr3 54576084 54576310 -105023473 + L1M4 LINE L1 5546 5769 -411 1 1001 557 229 16 0 chr3 54576642 54576764 -105023019 + ORR1D2 LTR MaLR 1 124 -246 1 1001 670 310 84 70 chr3 54576981 54577338 -105022445 - MTEa LTR MaLR -14 365 4 1 1001 890 191 131 0 chr3 54577655 54577838 -105021945 - B3 SINE B2 -9 207 1 1 1001 686 175 0 6 chr3 54579164 54579342 -105020441 + CT-rich Low_complexity Low_complexity 2 178 0 1 1001 543 237 8 0 chr3 54579401 54579519 -105020264 - B3 SINE B2 -1 215 97 1 1001 423 0 0 0 chr3 54579623 54579670 -105020113 + (TA)n Simple_repeat Simple_repeat 1 47 0 1 1001 216 0 0 0 chr3 54579675 54579699 -105020084 + (TG)n Simple_repeat Simple_repeat 2 25 0 1 1001 230 269 25 13 chr3 54579829 54579908 -105019875 - PB1 SINE Alu -43 84 5 1 1001 437 253 74 20 chr3 54579838 54579987 -105019796 - B4 SINE B4 -134 158 2 1 1001 212 280 8 130 chr3 54579987 54580085 -105019698 - ID SINE ID -140 84 2 1 1001 245 192 83 46 chr3 54580646 54580755 -105019028 + (CCCCAG)n Simple_repeat Simple_repeat 1 113 0 1 1001 1853 158 98 64 chr3 54580943 54581349 -105018434 - MTC LTR MaLR 0 421 2 1 1001 23 33 0 0 chr3 54581412 54581442 -105018341 + AT_rich Low_complexity Low_complexity 1 30 0 1 1001 480 235 0 10 chr3 54581460 54581559 -105018224 - ID_B1 SINE B4 -2 222 125 1 1001 1358 67 0 16 chr3 54581736 54581918 -105017865 - B2_Mm2 SINE B2 -16 179 1 1 1001 415 246 13 128 chr3 54582285 54582308 -105017475 + MT2B LTR ERVL 145 275 -325 1 1001 688 232 8 0 chr3 54582308 54582433 -105017350 + B1_Mur1 SINE Alu 4 129 -20 1 1001 559 179 66 0 chr3 54582429 54582535 -105017248 - RLTR30 LTR ERV1 -264 115 3 1 1001 312 256 107 8 chr3 54584708 54584830 -105014953 - Charlie1a DNA MER1_type -2 1453 1320 1 1001 319 211 56 0 chr3 54584865 54584936 -105014847 + RSINE1 SINE B4 4 78 -87 1 1001 477 256 67 94 chr3 54585013 54585072 -105014711 - Charlie1a DNA MER1_type -159 1296 1238 1 1001 841 196 142 5 chr3 54585072 54585262 -105014521 - B3 SINE B2 0 216 1 1 1001 477 256 67 94 chr3 54585262 54585469 -105014314 - Charlie1a DNA MER1_type -218 1237 1037 1 1001 264 209 22 99 chr3 54586912 54587093 -105012690 - RMER17A LTR ERVK -276 475 309 1 1001 235 262 15 15 chr3 54587381 54587447 -105012336 - ID4_ SINE ID -16 67 2 1 1001 306 0 0 0 chr3 54587480 54587514 -105012269 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 1 1001 1199 82 6 0 chr3 54587514 54587673 -105012110 - B2_Mm1t SINE B2 -33 160 1 1 1001 413 252 133 36 chr3 54588372 54588537 -105011246 + B3A SINE B2 1 181 -14 1 1001 25 0 0 0 chr3 54588798 54588823 -105010960 + AT_rich Low_complexity Low_complexity 1 25 0 1 1001 850 246 49 0 chr3 54588891 54589094 -105010689 + Lx9 LINE L1 6582 6794 -850 1 1001 975 109 22 0 chr3 54589238 54589375 -105010408 + B1_Mus1 SINE Alu 2 141 -7 1 1001 285 29 0 0 chr3 54589375 54589409 -105010374 + (CCA)n Simple_repeat Simple_repeat 1 34 0 1 1001 1216 34 0 20 chr3 54589793 54589942 -105009841 - B1_Mus2 SINE Alu 0 147 2 1 1001 430 208 39 19 chr3 54590522 54590625 -105009158 - PB1D10 SINE Alu -1 116 12 1 1001 313 290 176 8 chr3 54590698 54590823 -105008960 + RSINE1 SINE B4 3 148 -17 1 1001 204 179 0 0 chr3 54590825 54590864 -105008919 + (CTAA)n Simple_repeat Simple_repeat 2 40 0 1 1001 1013 137 0 45 chr3 54591123 54591241 -105008542 + URR1A DNA MER1_type 59 169 -57 1 1001 2453 135 113 11 chr3 54591241 54591699 -105008084 + RLTR16 LTR ERVK 1 505 0 1 1001 1013 137 0 45 chr3 54591699 54591756 -105008027 + URR1A DNA MER1_type 170 226 0 1 1001 277 210 136 29 chr3 54593566 54593669 -105006114 + PB1D10 SINE Alu 2 115 -2 1 1001 387 0 0 0 chr3 54593720 54593763 -105006020 + (TTA)n Simple_repeat Simple_repeat 3 45 0 1 1001 827 166 190 16 chr3 54593778 54593962 -105005821 - B3 SINE B2 0 216 1 1 1001 26 0 0 0 chr3 54594153 54594179 -105005604 + AT_rich Low_complexity Low_complexity 1 26 0 1 1001 646 284 0 0 chr3 54594192 54594333 -105005450 + ID_B1 SINE B4 84 224 0 1 1001 246 163 116 0 chr3 54594436 54594479 -105005304 - ID SINE ID -141 83 36 1 1001 452 233 68 0 chr3 54595175 54595278 -105004505 - PB1D10 SINE Alu -3 114 5 1 1001 414 0 0 0 chr3 54595278 54595324 -105004459 + (TG)n Simple_repeat Simple_repeat 2 47 0 1 1001 276 232 18 0 chr3 54595324 54595380 -105004403 - ID4 SINE ID -13 70 14 1 1001 414 0 0 0 chr3 54596605 54596651 -105003132 + (TG)n Simple_repeat Simple_repeat 1 46 0 1 1001 219 155 16 49 chr3 54596701 54596762 -105003021 + GA-rich Low_complexity Low_complexity 4 62 0 1 1001 545 136 223 0 chr3 54597040 54597143 -105002640 - B1_Mur1 SINE Alu -8 141 16 1 1001 38 0 0 0 chr3 54597322 54597360 -105002423 + AT_rich Low_complexity Low_complexity 1 38 0 1 1001 1798 102 101 7 chr3 54597369 54597676 -105002107 - Lx3B LINE L1 -4 6969 6634 1 1001 720 197 14 27 chr3 54597791 54597937 -105001846 - B3 SINE B2 -7 209 66 1 1001 562 281 81 52 chr3 54598548 54598758 -105001025 - Lx8 LINE L1 -124 7349 7134 1 1001 282 242 185 11 chr3 54598758 54598781 -105001002 - B1_Mur4 SINE Alu -36 114 89 1 1001 369 0 0 0 chr3 54598781 54598822 -105000961 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 1001 282 242 185 11 chr3 54598822 54598890 -105000893 - B1_Mur4 SINE Alu -62 88 8 1 1001 1223 142 58 5 chr3 54599390 54599595 -105000188 - B3 SINE B2 0 216 1 1 1001 224 361 12 35 chr3 54599596 54599611 -105000172 - BC1_Mm scRNA scRNA -66 86 3 1 1001 274 250 28 42 chr3 54599611 54599682 -105000101 - ID SINE ID -152 72 3 1 1001 26 64 0 0 chr3 54599731 54599778 -105000005 + AT_rich Low_complexity Low_complexity 1 47 0 1 1001 270 329 0 0 chr3 54600204 54600280 -104999503 - ID4_ SINE ID -6 77 2 1 1001 249 301 124 29 chr3 54600425 54600562 -104999221 - L2b LINE L2 -1 3374 3225 1 1001 518 70 19 29 chr3 54600720 54600823 -104998960 + (TCTA)n Simple_repeat Simple_repeat 3 104 0 1 1001 384 152 0 0 chr3 54602013 54602079 -104997704 + (CAGG)n Simple_repeat Simple_repeat 1 66 0 1 1001 766 200 22 0 chr3 54603391 54603526 -104996257 + B1_Mur2 SINE Alu 12 149 0 1 1001 1163 58 0 0 chr3 54604421 54604559 -104995224 - B1_Mm SINE Alu -9 138 1 2 1001 330 339 83 0 chr3 54605556 54605677 -104994106 - MLT1H LTR MaLR -75 430 300 2 1001 644 254 158 30 chr3 54606021 54606318 -104993465 - RLTR15 LTR ERVK -17 342 8 2 1001 411 319 83 18 chr3 54606376 54606545 -104993238 - MLT1H LTR MaLR -365 184 5 2 1001 245 272 0 69 chr3 54607143 54607230 -104992553 - ID4_ SINE ID -1 82 2 2 1001 559 237 13 13 chr3 54608182 54608316 -104991467 - PB1D10 SINE Alu -21 128 1 2 1001 214 330 10 81 chr3 54608545 54608644 -104991139 - PB1D9 SINE Alu -1 119 28 2 1001 21 57 0 0 chr3 54608821 54608856 -104990927 + AT_rich Low_complexity Low_complexity 1 35 0 2 1001 195 400 8 24 chr3 54610522 54610645 -104989138 - L3 LINE CR1 -126 4363 4243 2 1001 1161 37 0 0 chr3 54611861 54611996 -104987787 + B1_Mus2 SINE Alu 1 135 -12 2 1001 647 272 107 41 chr3 54612357 54612666 -104987117 - L1M2 LINE L1 -653 5647 5310 2 1001 184 54 0 75 chr3 54612666 54612706 -104987077 + (TTA)n Simple_repeat Simple_repeat 1 37 0 2 1001 270 209 272 15 chr3 54612706 54612722 -104987061 - L1M2 LINE L1 -836 5307 5270 2 1001 1066 66 139 40 chr3 54612722 54612742 -104987041 - B2_Mm1a SINE B2 0 193 171 2 1001 1099 54 0 86 chr3 54612742 54612904 -104986879 - B1_Mur3 SINE Alu 0 149 2 2 1001 1066 66 139 40 chr3 54612904 54612918 -104986865 - B2_Mm1a SINE B2 -23 170 161 2 1001 192 77 0 0 chr3 54612918 54612944 -104986839 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 2 1001 1066 66 139 40 chr3 54612944 54613081 -104986702 - B2_Mm1a SINE B2 -33 160 4 2 1001 270 209 272 15 chr3 54613081 54613132 -104986651 - L1M2 LINE L1 -874 5269 5216 2 1001 874 157 85 89 chr3 54613132 54613356 -104986427 - ORR1A4 LTR MaLR -106 223 1 2 1001 381 315 102 32 chr3 54613358 54613545 -104986238 - B4A SINE B4 -91 201 2 2 1001 642 148 0 0 chr3 54613545 54613660 -104986123 + (TC)n Simple_repeat Simple_repeat 2 116 0 2 1001 253 296 12 12 chr3 54613660 54613742 -104986041 - B4 SINE B4 -205 87 6 2 1001 747 207 122 70 chr3 54615337 54615665 -104984118 - L1M2 LINE L1 -2555 3588 3244 2 1001 1251 97 21 11 chr3 54615675 54615862 -104983921 - B2_Mm2 SINE B2 -6 189 1 2 1001 255 275 14 14 chr3 54616001 54616071 -104983712 - ID4 SINE ID -11 72 3 2 1001 245 273 13 0 chr3 54616136 54616213 -104983570 - L1MB8 LINE L1 -186 5992 5915 2 1001 1148 61 31 0 chr3 54616624 54616787 -104982996 + B2_Mm1t SINE B2 12 179 -14 2 1001 347 111 0 0 chr3 54616829 54616883 -104982900 + B2_Mm2 SINE B2 48 101 -94 2 1001 24 0 0 0 chr3 54616905 54616929 -104982854 + AT_rich Low_complexity Low_complexity 1 24 0 2 1001 261 215 73 7 chr3 54617864 54617950 -104981833 + MLT1A0 LTR MaLR 27 116 -292 2 1001 474 317 99 11 chr3 54617985 54618176 -104981607 + B4A SINE B4 1 208 -84 2 1001 415 95 27 0 chr3 54618184 54618258 -104981525 + (CA)n Simple_repeat Simple_repeat 2 77 0 2 1001 471 324 36 41 chr3 54618297 54618493 -104981290 + MLT1A0 LTR MaLR 165 359 -6 2 1001 317 287 70 0 chr3 54618719 54618862 -104980921 + L1MC5 LINE L1 7293 7445 -516 2 1001 186 43 0 0 chr3 54619008 54619031 -104980752 + (CA)n Simple_repeat Simple_repeat 2 24 0 2 1001 613 203 204 73 chr3 54619314 54619505 -104980278 - B3 SINE B2 0 216 1 2 1001 36 23 0 0 chr3 54619511 54619554 -104980229 + AT_rich Low_complexity Low_complexity 1 43 0 2 1001 317 349 18 35 chr3 54619556 54619669 -104980114 - MTE2b LTR MaLR -174 205 95 2 1001 412 206 155 0 chr3 54619949 54620046 -104979737 - MTE2b LTR MaLR -267 112 1 2 1001 2155 289 142 14 chr3 54620047 54620903 -104978880 - MTE2b-int LTR MaLR -1 1579 614 2 1001 189 229 0 0 chr3 54620943 54620991 -104978792 + (TATG)n Simple_repeat Simple_repeat 4 51 0 2 1001 779 232 25 84 chr3 54620992 54621349 -104978434 + RLTR15 LTR ERVK 1 336 -23 2 1001 349 169 0 24 chr3 54621352 54621437 -104978346 + (TATG)n Simple_repeat Simple_repeat 4 86 0 2 1001 340 194 0 0 chr3 54622101 54622168 -104977615 - B3A SINE B2 -127 71 5 2 1001 1155 255 61 38 chr3 54623379 54623770 -104976013 + MTD LTR MaLR 1 400 -19 2 1001 268 156 44 11 chr3 54624241 54624332 -104975451 + (CCA)n Simple_repeat Simple_repeat 1 94 0 2 1001 300 91 0 0 chr3 54624349 54624393 -104975390 + (CAT)n Simple_repeat Simple_repeat 1 44 0 2 1001 485 224 97 0 chr3 54624663 54624797 -104974986 + RSINE1 SINE B4 2 148 -17 2 1001 613 156 0 22 chr3 54625702 54625885 -104973898 + (CAGAGA)n Simple_repeat Simple_repeat 2 180 0 2 1001 1250 119 124 0 chr3 54626254 54626455 -104973328 + URR1A DNA MER1_type 1 226 0 2 1001 352 298 103 35 chr3 54626491 54626665 -104973118 + MER5A DNA MER1_type 1 186 -3 2 1001 371 294 138 8 chr3 54627040 54627287 -104972496 + L1M5 LINE L1 5256 5534 -645 2 1001 1275 103 49 0 chr3 54627303 54627487 -104972296 - B2_Mm2 SINE B2 -1 194 2 2 1001 818 186 232 4 chr3 54627770 54628007 -104971776 + RMER2 LTR ERV1 27 317 -250 2 1001 2549 48 30 72 chr3 54628009 54628414 -104971369 - RLTR10 LTR ERVK -2 388 1 2 1001 17024 28 8 14 chr3 54628416 54630410 -104969373 - RLTR10-int LTR ERVK -3 1984 3 2 1001 2549 48 30 72 chr3 54630414 54630819 -104968964 - RLTR10 LTR ERVK -2 388 1 2 1001 530 241 117 52 chr3 54630819 54631059 -104968724 + RMER2 LTR ERV1 312 567 0 2 1001 888 185 0 7 chr3 54631142 54631289 -104968494 - B1_Mur4 SINE Alu -1 149 4 2 1001 1121 306 23 34 chr3 54631337 54631808 -104967975 - L1MA6 LINE L1 -60 6240 5775 2 1001 1327 253 44 35 chr3 54632183 54632638 -104967145 - L1_Rod LINE L1 -3191 2656 2198 2 1001 1163 81 0 0 chr3 54632669 54632817 -104966966 - B1_Mus1 SINE Alu 0 148 1 2 1001 489 244 25 0 chr3 54632817 54632936 -104966847 - L1_Rod LINE L1 -3636 2211 2090 2 1001 3322 40 0 36 chr3 54632953 54633364 -104966419 - MTA_Mm LTR MaLR 0 396 1 2 1001 251 306 17 51 chr3 54634533 54634650 -104965133 - PB1D10 SINE Alu 0 117 5 2 1001 297 286 0 21 chr3 54634861 54634954 -104964829 - MLT1E2 LTR MaLR 0 627 537 2 1001 285 262 75 88 chr3 54635038 54635197 -104964586 - MLT1E2 LTR MaLR -261 244 88 2 1001 26 30 0 0 chr3 54635472 54635505 -104964278 + AT_rich Low_complexity Low_complexity 1 33 0 2 1001 651 247 53 11 chr3 54636026 54636214 -104963569 - ORR1D2 LTR MaLR 0 370 175 2 1001 1668 134 9 66 chr3 54636745 54637065 -104962718 + ORR1A4 LTR MaLR 1 302 -27 2 1001 627 81 0 0 chr3 54637065 54637151 -104962632 + (TCCC)n Simple_repeat Simple_repeat 4 89 0 2 1001 552 234 21 28 chr3 54637519 54637664 -104962119 - B1_Mur1 SINE Alu -5 144 1 2 1001 1130 97 114 0 chr3 54637748 54637923 -104961860 - B2_Mm2 SINE B2 0 195 1 2 1001 1081 285 73 54 chr3 54638498 54638860 -104960923 - L1MA5 LINE L1 -275 6025 5650 2 1001 2376 90 19 0 chr3 54638860 54639181 -104960602 + ORR1A2 LTR MaLR 1 327 0 2 1001 1081 285 73 54 chr3 54639181 54639340 -104960443 - L1MA5 LINE L1 -651 5649 5494 2 1001 1116 196 24 0 chr3 54639564 54639773 -104960010 + B3 SINE B2 3 216 0 2 1001 544 250 59 94 chr3 54639983 54640145 -104959638 - B3A SINE B2 -1 197 34 2 1001 1246 111 16 0 chr3 54640145 54640334 -104959449 - B2_Mm1t SINE B2 0 193 2 2 1001 544 250 59 94 chr3 54640334 54640374 -104959409 - B3A SINE B2 -165 33 2 2 1001 8253 76 11 12 chr3 54640435 54642012 -104957771 + L1_Mus3 LINE L1 5055 6631 -7 2 1001 372 255 113 7 chr3 54642268 54642418 -104957365 - MER2 DNA MER2_type -179 166 1 2 1001 1016 235 5 0 chr3 54643215 54643419 -104956364 + B3 SINE B2 1 205 -11 2 1001 24 53 0 0 chr3 54643420 54643458 -104956325 + AT_rich Low_complexity Low_complexity 1 38 0 2 1001 3475 28 2 2 chr3 54643503 54643899 -104955884 - MTA_Mm LTR MaLR 0 396 1 2 1001 1085 309 80 38 chr3 54644338 54645084 -104954699 - L1MB3 LINE L1 -130 6053 5276 2 1001 11534 75 6 69 chr3 54645201 54648111 -104951672 - Lx3_Mus LINE L1 0 7009 4315 2 1001 274 276 0 0 chr3 54648100 54648187 -104951596 - L1M4 LINE L1 -983 5163 5077 2 1001 952 324 98 23 chr3 54648654 54649451 -104950332 - Charlie7 DNA MER1_type -444 2168 1312 2 1001 26 30 0 0 chr3 54649467 54649500 -104950283 + AT_rich Low_complexity Low_complexity 1 33 0 2 1001 226 309 21 82 chr3 54649729 54649923 -104949860 - Charlie7 DNA MER1_type -1640 972 791 2 1001 258 132 74 19 chr3 54649921 54649975 -104949808 + PB1D9 SINE Alu 64 120 0 2 1001 271 23 45 23 chr3 54649975 54650019 -104949764 + (CAAAA)n Simple_repeat Simple_repeat 1 45 0 2 1001 722 354 115 10 chr3 54650244 54650627 -104949156 - LTR16D LTR ERVL -203 448 26 2 1001 278 260 203 0 chr3 54651657 54651780 -104948003 - MERVL_2A-int LTR ERVL -1408 4353 4206 2 1001 417 254 132 42 chr3 54652108 54652297 -104947486 + LTR16B2 LTR ERVL 105 310 -152 2 1001 2234 84 60 17 chr3 54653101 54653453 -104946330 + IAPLTR1_Mm LTR ERVK 1 367 0 2 125 56312 28 8 5 chr3 54653453 54659901 -104939882 + IAPEz-int LTR ERVK 8 6479 -2 2 1002 2234 84 60 17 chr3 54659903 54660255 -104939528 + IAPLTR1_Mm LTR ERVK 1 367 0 2 1002 3202 65 20 0 chr3 54660415 54660814 -104938969 - MTB_Mm LTR MaLR 0 407 1 2 1002 536 0 16 0 chr3 54661079 54661143 -104938640 + (GA)n Simple_repeat Simple_repeat 2 66 0 2 1002 397 266 56 28 chr3 54662184 54662327 -104937456 + B1F SINE Alu 3 149 0 2 1002 700 184 50 0 chr3 54662978 54663119 -104936664 + B3 SINE B2 2 149 -67 2 1002 213 108 0 0 chr3 54663131 54663168 -104936615 + (TG)n Simple_repeat Simple_repeat 1 37 0 2 1002 311 282 0 0 chr3 54663375 54663446 -104936337 + ID4 SINE ID 2 72 -11 2 1002 1236 42 0 0 chr3 54664492 54664636 -104935147 - B1_Mm SINE Alu -3 144 1 2 1002 405 0 0 0 chr3 54665711 54665756 -104934027 + (TC)n Simple_repeat Simple_repeat 2 46 0 2 1002 225 0 0 0 chr3 54665756 54665780 -104934003 + (TG)n Simple_repeat Simple_repeat 2 26 0 2 1002 495 299 93 47 chr3 54665815 54666029 -104933754 - B4A SINE B4 -25 267 44 2 1002 321 145 0 0 chr3 54666061 54666123 -104933660 + (TC)n Simple_repeat Simple_repeat 1 62 0 2 1002 1115 49 0 40 chr3 54666525 54666673 -104933110 + B1_Mus2 SINE Alu 1 142 -5 2 1002 540 0 0 0 chr3 54666678 54666738 -104933045 + (GA)n Simple_repeat Simple_repeat 2 61 0 2 1002 1346 229 75 3 chr3 54667139 54667433 -104932350 - Lx5 LINE L1 -1 7049 6735 2 1002 4930 170 38 13 chr3 54667430 54668759 -104931024 - Lx5 LINE L1 -425 6625 5246 2 1002 632 281 46 5 chr3 54669699 54670038 -104929745 - MTD LTR MaLR 0 419 17 2 1002 510 17 0 0 chr3 54670696 54670755 -104929028 + (GA)n Simple_repeat Simple_repeat 1 59 0 2 1002 2190 146 2 76 chr3 54671224 54671632 -104928151 + Lx4B LINE L1 6680 7057 -1 2 1002 1588 47 0 0 chr3 54672761 54672954 -104926829 - L1_Mus1 LINE L1 -528 6039 5847 2 1002 4212 61 6 0 chr3 54672954 54673475 -104926308 + L1_Mus1 LINE L1 6038 6561 -6 2 1002 252 0 0 0 chr3 54673475 54673503 -104926280 + (TA)n Simple_repeat Simple_repeat 1 28 0 2 1002 22 70 0 0 chr3 54674007 54674050 -104925733 + AT_rich Low_complexity Low_complexity 1 43 0 3 1002 878 216 43 19 chr3 54674100 54674308 -104925475 - B3 SINE B2 -3 213 1 3 1002 396 0 0 0 chr3 54674333 54674377 -104925406 + (TG)n Simple_repeat Simple_repeat 1 44 0 3 1002 231 286 0 0 chr3 54674647 54674710 -104925073 + RMER4A LTR ERVK 5 67 -399 3 1002 378 136 0 0 chr3 54675098 54675179 -104924604 + (T)n Simple_repeat Simple_repeat 1 81 0 3 1002 258 369 34 51 chr3 54675272 54675449 -104924334 - MER5A DNA MER1_type -3 186 13 3 1002 2544 101 59 3 chr3 54675756 54676145 -104923638 + IAPLTR2a LTR ERVK 1 411 0 3 1002 1051 121 25 81 chr3 54676146 54676344 -104923439 + IAPEz-int LTR ERVK 9 195 -6286 3 1002 236 244 0 0 chr3 54676352 54676397 -104923386 + RLTR27 LTR ERVK 231 275 -34 3 1002 3593 73 33 18 chr3 54676397 54676885 -104922898 + IAPEz-int LTR ERVK 168 662 -5819 3 1002 2289 61 0 0 chr3 54676885 54677163 -104922620 + IAPEz-int LTR ERVK 1359 1636 -4845 3 1002 6162 42 13 12 chr3 54677162 54677907 -104921876 + IAPEz-int LTR ERVK 5736 6481 0 3 1002 2561 89 81 3 chr3 54677907 54678288 -104921495 + IAPLTR2a LTR ERVK 1 411 0 3 1002 343 266 109 0 chr3 54678309 54678437 -104921346 - MER33 DNA MER1_type -135 189 48 3 1002 2139 87 8 129 chr3 54679406 54679787 -104919996 - Lx2A LINE L1 -9 6999 6665 3 1002 465 19 0 0 chr3 54680313 54680367 -104919416 + (CA)n Simple_repeat Simple_repeat 1 54 0 3 1002 613 278 174 12 chr3 54680511 54680769 -104919014 + MTEb LTR MaLR 80 379 0 3 1002 351 0 0 0 chr3 54680996 54681035 -104918748 + (TG)n Simple_repeat Simple_repeat 1 39 0 3 1002 474 187 7 13 chr3 54681035 54681187 -104918596 + GA-rich Low_complexity Low_complexity 2 152 0 3 1002 365 265 48 30 chr3 54682837 54683004 -104916779 - L1MA5 LINE L1 -1 6299 6130 3 1002 503 215 14 58 chr3 54683246 54683384 -104916399 - RLTR28 LTR ERVL 0 524 393 3 1002 393 139 0 0 chr3 54683404 54683476 -104916307 - RLTR28 LTR ERVL -327 154 83 3 1002 251 98 0 56 chr3 54683485 54683539 -104916244 - L1Md_F2 LINE L1 -11 6571 6521 3 1002 5416 73 13 1 chr3 54683560 54684274 -104915509 - L1_Mus3 LINE L1 -7 6631 5910 3 1002 5170 133 8 0 chr3 54684274 54685061 -104914722 + L1_Mm LINE L1 4489 5281 -602 3 1002 540 106 0 23 chr3 54685068 54685155 -104914628 - RLTR28 LTR ERVL -437 87 3 3 1002 291 236 56 12 chr3 54686730 54686822 -104912961 - RSINE1 SINE B4 -195 97 2 3 1002 1478 127 12 12 chr3 54687740 54687995 -104911788 + RLTR1 LTR ERV1 370 624 0 3 1002 389 44 0 56 chr3 54688170 54688242 -104911541 + (TA)n Simple_repeat Simple_repeat 2 69 0 3 1002 258 32 0 0 chr3 54688244 54688275 -104911508 + (CA)n Simple_repeat Simple_repeat 2 32 0 3 1002 31 44 0 0 chr3 54689873 54689918 -104909865 + AT_rich Low_complexity Low_complexity 1 45 0 3 1002 2799 114 44 9 chr3 54690536 54690971 -104908812 + RLTR11B LTR ERVK 4 453 0 3 1002 213 245 220 20 chr3 54690995 54691095 -104908688 + PB1D7 SINE Alu 1 120 0 3 1002 610 277 60 111 chr3 54693108 54693441 -104906342 + MTE2a LTR MaLR 1 316 -63 3 1002 626 305 67 58 chr3 54693977 54694353 -104905430 - MTEa LTR MaLR 0 379 1 3 1002 450 0 0 0 chr3 54695255 54695305 -104904478 + (TCTA)n Simple_repeat Simple_repeat 3 52 0 3 1002 212 0 0 35 chr3 54695920 54695949 -104903834 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 3 1002 362 293 81 0 chr3 54696252 54696375 -104903408 + L2a LINE L2 3288 3420 -6 3 1002 1874 234 158 26 chr3 54696695 54696973 -104902810 - Lx8 LINE L1 -2 7471 7147 3 1002 4211 72 31 0 chr3 54696973 54697528 -104902255 - L1_Mus4 LINE L1 -2 6634 6063 3 1002 1874 234 158 26 chr3 54697528 54697814 -104901969 - Lx8 LINE L1 -327 7146 6833 3 1002 315 0 0 0 chr3 54698811 54698846 -104900937 + (TG)n Simple_repeat Simple_repeat 1 35 0 3 1002 648 26 0 0 chr3 54698846 54698923 -104900860 + (GA)n Simple_repeat Simple_repeat 1 78 0 3 1002 203 0 0 36 chr3 54699376 54699404 -104900379 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 3 1002 180 234 0 0 chr3 54700388 54700435 -104899348 + CT-rich Low_complexity Low_complexity 3 49 0 3 1002 180 0 0 0 chr3 54700557 54700577 -104899206 + (TGGGGG)n Simple_repeat Simple_repeat 2 21 0 3 1002 596 265 74 0 chr3 54700709 54700871 -104898912 - B3A SINE B2 -24 174 1 3 1002 248 170 19 0 chr3 54702748 54702801 -104896982 + CT-rich Low_complexity Low_complexity 1 54 0 3 1002 700 303 106 45 chr3 54704577 54704974 -104894809 + Lx9 LINE L1 7009 7429 -215 3 1002 519 133 23 0 chr3 54705751 54705879 -104893904 + GA-rich Low_complexity Low_complexity 2 132 0 3 1002 954 102 17 0 chr3 54705880 54706056 -104893727 + (GA)n Simple_repeat Simple_repeat 2 180 0 3 1002 1848 90 0 0 chr3 54706992 54707248 -104892535 - L1_Mus4 LINE L1 0 6636 6381 3 1002 341 262 12 0 chr3 54707575 54707655 -104892128 - PB1D10 SINE Alu -6 111 31 3 1002 531 66 0 0 chr3 54708147 54708223 -104891560 + (TC)n Simple_repeat Simple_repeat 1 76 0 3 1002 927 176 101 19 chr3 54708811 54709019 -104890764 + URR1B DNA MER1_type 1 225 0 3 1002 243 0 0 0 chr3 54709323 54709350 -104890433 + (TGAA)n Simple_repeat Simple_repeat 3 29 0 3 1002 830 234 21 31 chr3 54709373 54709567 -104890216 + B3A SINE B2 5 196 -2 3 1002 192 40 0 0 chr3 54710525 54710550 -104889233 + (TTTG)n Simple_repeat Simple_repeat 1 25 0 3 1002 1001 90 0 0 chr3 54710552 54710685 -104889098 - B1_Mus1 SINE Alu -15 133 1 3 1002 897 79 0 0 chr3 54710784 54710911 -104888872 + (CA)n Simple_repeat Simple_repeat 1 127 0 3 1002 250 229 0 14 chr3 54710993 54711064 -104888719 - L1ME5 LINE L1 -189 6005 5936 3 1002 22 0 0 0 chr3 54711914 54711936 -104887847 + AT_rich Low_complexity Low_complexity 1 22 0 3 1002 311 292 31 10 chr3 54711968 54712065 -104887718 + PB1D10 SINE Alu 10 108 -9 3 1002 978 144 0 0 chr3 54714116 54714296 -104885487 + (GGGAGA)n Simple_repeat Simple_repeat 1 180 0 3 1002 806 276 62 23 chr3 54715304 54715660 -104884123 - Lx7 LINE L1 -3 7470 7073 3 1002 474 18 0 0 chr3 54718152 54718207 -104881576 + (TG)n Simple_repeat Simple_repeat 2 56 0 3 1002 552 291 92 15 chr3 54720828 54721034 -104878749 + ID_B1 SINE B4 1 222 -2 3 1002 398 274 25 50 chr3 54721129 54721248 -104878535 - B1F SINE Alu 0 149 34 3 1002 1401 256 39 8 chr3 54721318 54721676 -104878107 + MTD LTR MaLR 1 369 -50 3 1002 229 290 190 28 chr3 54722293 54722435 -104877348 - MLT1C LTR MaLR -101 366 202 3 1002 844 181 146 16 chr3 54723392 54723577 -104876206 + B3 SINE B2 3 211 -5 3 1002 190 347 31 10 chr3 54723998 54724094 -104875689 - L2c LINE L2 -26 3361 3264 3 1002 580 163 72 16 chr3 54725000 54725125 -104874658 + B1_Mur2 SINE Alu 18 149 0 3 1002 360 0 0 0 chr3 54726394 54726434 -104873349 + (TC)n Simple_repeat Simple_repeat 1 40 0 3 1002 1210 35 7 0 chr3 54726528 54726673 -104873110 + B1_Mus2 SINE Alu 2 147 0 3 1002 272 134 0 43 chr3 54726675 54726745 -104873038 + (TAAA)n Simple_repeat Simple_repeat 4 70 0 3 1002 481 159 9 0 chr3 54727133 54727240 -104872543 + ORR1A1 LTR MaLR 1 108 -238 3 1002 240 143 0 0 chr3 54727240 54727296 -104872487 + ORR1A1 LTR MaLR 82 137 -257 3 1002 2031 94 3 7 chr3 54727318 54727618 -104872165 + ORR1A2 LTR MaLR 29 327 0 3 1002 646 227 56 14 chr3 54728214 54728357 -104871426 + B1F2 SINE Alu 1 149 0 3 1002 22 35 0 0 chr3 54728584 54728613 -104871170 + AT_rich Low_complexity Low_complexity 1 29 0 3 1002 432 57 14 0 chr3 54728620 54728685 -104871098 - B2_Mm2 SINE B2 -82 116 46 3 1002 1299 96 11 6 chr3 54728695 54728873 -104870910 - B2_Mm1t SINE B2 -12 181 3 3 1002 223 200 18 18 chr3 54728998 54729054 -104870729 + CT-rich Low_complexity Low_complexity 2 57 0 3 1002 254 287 62 21 chr3 54729525 54729621 -104870162 + Charlie2a DNA MER1_type 442 541 -2320 3 1002 939 285 49 6 chr3 54729862 54730211 -104869572 - L1MC3 LINE L1 -107 7678 7315 3 1002 233 321 54 18 chr3 54730462 54730574 -104869209 - PB1D9 SINE Alu -8 112 1 3 1002 29 47 0 0 chr3 54730850 54730893 -104868890 + AT_rich Low_complexity Low_complexity 1 43 0 3 1002 378 295 0 43 chr3 54730898 54731015 -104868768 - PB1D10 SINE Alu -5 112 1 3 1002 348 286 62 84 chr3 54731573 54731616 -104868167 + Charlie2a DNA MER1_type 1662 1699 -1162 3 1002 474 250 75 0 chr3 54731616 54731736 -104868047 - B1F2 SINE Alu -18 131 3 3 1002 348 286 62 84 chr3 54731736 54732013 -104867770 + Charlie2a DNA MER1_type 1700 1975 -886 3 1002 1851 171 45 29 chr3 54732039 54732413 -104867370 + MTB_Mm LTR MaLR 1 380 -27 3 1002 234 91 0 0 chr3 54732431 54732464 -104867319 + (T)n Simple_repeat Simple_repeat 1 33 0 3 1002 595 252 165 52 chr3 54732544 54732908 -104866875 + MTD LTR MaLR 1 405 -14 3 1002 1072 214 199 13 chr3 54733090 54733402 -104866381 + ORR1D2 LTR MaLR 1 370 0 3 1002 776 255 108 85 chr3 54733427 54734001 -104865782 + Charlie2a DNA MER1_type 2244 2830 -31 3 1002 993 72 0 0 chr3 54734174 54734313 -104865470 + (CA)n Simple_repeat Simple_repeat 2 140 0 3 1002 367 136 39 0 chr3 54734314 54734417 -104865366 + (CAGA)n Simple_repeat Simple_repeat 2 108 0 3 1002 383 292 86 14 chr3 54734729 54734868 -104864915 - RSINE1 SINE B4 -6 159 11 3 1002 1262 309 83 55 chr3 54734882 54735690 -104864093 - Charlie1a DNA MER1_type -351 1104 274 3 1002 237 289 0 26 chr3 54736103 54736181 -104863602 + CT-rich Low_complexity Low_complexity 1 76 0 3 1002 611 263 59 46 chr3 54736302 54736541 -104863242 - L1MB1 LINE L1 -139 6050 5809 3 1002 371 281 11 0 chr3 54736667 54736756 -104863027 - B3 SINE B2 -41 175 86 3 1002 857 155 42 0 chr3 54736791 54736959 -104862824 - RMER13A LTR ERVK -98 762 588 3 1002 1178 65 0 0 chr3 54736964 54737117 -104862666 - L1_Mus1 LINE L1 -491 6076 5924 3 1002 3986 61 0 2 chr3 54737117 54737609 -104862174 + L1_Mus1 LINE L1 6075 6565 -2 3 1002 2814 155 63 72 chr3 54737627 54738211 -104861572 - RMER13A LTR ERVK -280 580 2 3 1002 422 231 22 11 chr3 54738214 54738306 -104861477 - B3A SINE B2 -105 93 1 3 1002 28 0 0 0 chr3 54738314 54738342 -104861441 + AT_rich Low_complexity Low_complexity 1 28 0 3 1002 232 263 40 0 chr3 54738999 54739075 -104860708 - Arthur1 DNA Tip100 -4 3943 3865 3 1002 436 250 109 26 chr3 54740295 54740451 -104859332 - MTEb LTR MaLR -8 371 203 3 1002 399 235 83 8 chr3 54740451 54740571 -104859212 + MTD LTR MaLR 277 405 -14 3 1002 425 291 16 8 chr3 54740592 54740720 -104859063 - MTEb LTR MaLR -226 153 25 3 1002 2476 289 92 10 chr3 54740759 54741538 -104858245 - MTEb-int LTR MaLR -16 1564 722 3 1002 239 314 35 11 chr3 54741630 54741717 -104858066 + LTR33B LTR ERVL 1 89 -414 3 1002 22 0 0 0 chr3 54742086 54742108 -104857675 + AT_rich Low_complexity Low_complexity 1 22 0 3 1002 8017 53 5 0 chr3 54742108 54743082 -104856701 - L1_Mus1 LINE L1 -2 6565 5587 4 1002 1166 41 14 7 chr3 54743120 54743266 -104856517 - B1_Mm SINE Alu 0 147 1 4 1002 399 21 0 0 chr3 54743332 54743380 -104856403 + (TG)n Simple_repeat Simple_repeat 2 49 0 4 1002 814 167 0 0 chr3 54743459 54743591 -104856192 + B1_Mur2 SINE Alu 5 136 -13 4 1002 189 0 0 0 chr3 54743592 54743613 -104856170 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 4 1002 1119 236 90 85 chr3 54743769 54744181 -104855602 + MTD LTR MaLR 6 419 0 4 1002 1040 24 0 8 chr3 54744347 54744475 -104855308 + (CAAAG)n Simple_repeat Simple_repeat 2 128 0 4 1002 41 36 0 0 chr3 54744990 54745045 -104854738 + AT_rich Low_complexity Low_complexity 1 55 0 4 1002 579 339 12 20 chr3 54745216 54745469 -104854314 - B4A SINE B4 -22 270 20 4 1002 1382 231 62 11 chr3 54747383 54747737 -104852046 - MTEb LTR MaLR -5 374 3 4 1002 347 298 10 0 chr3 54748146 54748250 -104851533 - PB1D10 SINE Alu -12 105 1 4 1002 1015 185 252 108 chr3 54748356 54748756 -104851027 + MT2A LTR ERVL 2 459 -74 4 1002 186 43 0 0 chr3 54748756 54748779 -104851004 + (TG)n Simple_repeat Simple_repeat 2 24 0 4 1002 572 249 144 67 chr3 54748779 54748818 -104850965 + MT2A LTR ERVL 524 583 -1 4 1002 930 237 20 0 chr3 54749498 54749696 -104850087 + B3 SINE B2 1 202 -14 4 1002 215 261 276 12 chr3 54749944 54750107 -104849676 + MIR SINE MIR 29 234 -28 4 1002 183 80 0 0 chr3 54750582 54750607 -104849176 + (TTCC)n Simple_repeat Simple_repeat 3 27 0 4 1002 248 0 31 0 chr3 54750658 54750690 -104849093 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 4 1002 630 49 0 0 chr3 54751549 54751631 -104848152 + (TCTA)n Simple_repeat Simple_repeat 3 84 0 4 1002 252 175 0 23 chr3 54751631 54751680 -104848103 - B1F SINE Alu -8 141 74 4 1002 4201 81 3 25 chr3 54751865 54752461 -104847322 - L1_Mus4 LINE L1 -1 6635 6053 4 1002 22 0 0 0 chr3 54753788 54753810 -104845973 + AT_rich Low_complexity Low_complexity 1 22 0 4 1002 23 0 0 0 chr3 54753909 54753932 -104845851 + AT_rich Low_complexity Low_complexity 1 23 0 4 1002 207 100 0 0 chr3 54754546 54754576 -104845207 + (TTG)n Simple_repeat Simple_repeat 1 30 0 4 1002 1082 241 134 9 chr3 54754808 54755152 -104844631 - MTD LTR MaLR 0 419 33 4 1002 251 295 77 8 chr3 54755153 54755283 -104844500 - L1M2 LINE L1 -972 5171 5033 4 1002 8230 44 1 3 chr3 54755475 54756463 -104843320 - L1Md_F2 LINE L1 0 6582 5597 4 1002 236 273 112 11 chr3 54756675 54756764 -104843019 + MER74B LTR ERVL 76 173 -449 4 1002 216 0 0 0 chr3 54756808 54756832 -104842951 + (TGGGGG)n Simple_repeat Simple_repeat 6 29 0 4 1002 655 297 39 0 chr3 54756838 54757020 -104842763 - B4A SINE B4 -18 274 86 4 1002 852 235 54 15 chr3 54757625 54757828 -104841955 + B3 SINE B2 2 212 -4 4 1002 2542 111 54 0 chr3 54757853 54758320 -104841463 - Lx2A1 LINE L1 -1037 5971 5488 4 1002 683 122 15 15 chr3 54758325 54758458 -104841325 + Lx2A1 LINE L1 6869 7001 -7 4 1002 574 242 121 5 chr3 54758903 54759102 -104840681 + Lx8 LINE L1 6843 7064 -409 4 1002 389 306 93 5 chr3 54759256 54759450 -104840333 + MER2 DNA MER2_type 109 319 -26 4 1002 216 67 0 0 chr3 54760367 54760397 -104839386 + (CAA)n Simple_repeat Simple_repeat 1 30 0 4 1002 570 98 0 0 chr3 54760770 54760852 -104838931 + (GGGA)n Simple_repeat Simple_repeat 4 85 0 4 1002 310 299 8 17 chr3 54761671 54761790 -104837993 - L2 LINE L2 -1643 1776 1659 4 1002 28 0 0 0 chr3 54762323 54762351 -104837432 + AT_rich Low_complexity Low_complexity 1 28 0 4 1002 297 0 0 0 chr3 54763766 54763799 -104835984 + (TC)n Simple_repeat Simple_repeat 1 33 0 4 1002 334 204 11 11 chr3 54763799 54763893 -104835890 + (CA)n Simple_repeat Simple_repeat 2 95 0 4 1002 3314 51 5 2 chr3 54764463 54764874 -104834909 - L1_Mus1 LINE L1 0 6567 6156 4 1002 649 204 111 77 chr3 54765103 54765310 -104834473 + B3 SINE B2 2 215 -1 4 1002 288 273 58 34 chr3 54765356 54765561 -104834222 + HAL1b LINE L1 1303 1512 -497 4 1002 231 325 60 0 chr3 54765565 54765648 -104834135 - L4 LINE RTE -594 1435 1348 4 1002 404 139 69 0 chr3 54766163 54766235 -104833548 - RMER6C LTR ERVK -613 77 1 4 1002 627 261 117 21 chr3 54766566 54766805 -104832978 + L3 LINE CR1 3556 3817 -672 4 1002 293 255 158 51 chr3 54767351 54767566 -104832217 - L1_Mur3 LINE L1 -750 5434 5163 4 1002 964 274 75 29 chr3 54767569 54767857 -104831926 + L1MA4A LINE L1 5449 5744 -559 4 1002 1624 187 100 17 chr3 54767857 54768206 -104831577 + ORR1C1 LTR MaLR 1 378 0 4 1002 964 277 77 32 chr3 54768206 54768374 -104831409 + L1MA4A LINE L1 5716 5896 -1577 4 1002 23 0 0 0 chr3 54768577 54768600 -104831183 + AT_rich Low_complexity Low_complexity 1 23 0 4 1002 222 37 0 0 chr3 54770858 54770885 -104828898 + (CA)n Simple_repeat Simple_repeat 2 28 0 4 1002 236 255 107 21 chr3 54771284 54771397 -104828386 - L1MC LINE L1 -2133 5652 5523 4 1002 747 252 16 2 chr3 54771529 54771722 -104828061 + Lx8 LINE L1 7024 7240 -233 4 1002 252 322 91 0 chr3 54771962 54772083 -104827700 + B3A SINE B2 1 132 -66 4 1002 273 57 0 0 chr3 54772098 54772133 -104827650 + (CA)n Simple_repeat Simple_repeat 2 36 0 4 1002 29493 78 9 8 chr3 54772232 54776917 -104822866 - L1_Mus1 LINE L1 -1 6566 1878 4 1002 328 284 36 29 chr3 54777786 54777924 -104821859 + MLT2B4 LTR ERVL 11 149 -407 4 1002 2040 51 0 4 chr3 54778321 54778575 -104821208 - L1Md_F2 LINE L1 -12 6570 6318 4 1002 267 246 0 0 chr3 54778631 54778688 -104821095 - ID4 SINE ID -25 58 2 4 1002 6835 154 18 31 chr3 54779159 54780202 -104819581 + MTC-int LTR MaLR 2 1046 -212 4 1002 1180 69 0 0 chr3 54780202 54780347 -104819436 - B1_Mus1 SINE Alu -2 146 2 4 1002 6835 154 18 31 chr3 54780347 54780576 -104819207 + MTC-int LTR MaLR 1047 1258 0 4 1002 562 122 22 0 chr3 54780580 54780670 -104819113 + MTC LTR MaLR 5 96 -325 4 1002 5847 185 24 15 chr3 54780672 54781069 -104818714 + Lx5 LINE L1 4717 5112 -765 4 1002 2242 156 42 3 chr3 54781069 54781448 -104818335 - ORR1B1 LTR MaLR 0 394 1 4 1002 5847 201 36 19 chr3 54781448 54782659 -104817124 + Lx5 LINE L1 5113 6363 -687 4 1002 1870 236 175 19 chr3 54782643 54783214 -104816569 + Lx5 LINE L1 6490 7434 -26 4 1002 444 82 0 0 chr3 54783396 54783457 -104816326 + (CA)n Simple_repeat Simple_repeat 2 62 0 4 1002 203 170 0 21 chr3 54783457 54783505 -104816278 + (TA)n Simple_repeat Simple_repeat 2 48 0 4 1002 562 301 69 87 chr3 54783918 54784297 -104815486 - RMER5 LTR ERV1 -162 372 1 4 1002 1077 129 0 0 chr3 54784672 54784843 -104814940 + (TTCC)n Simple_repeat Simple_repeat 3 173 0 4 1002 706 87 43 0 chr3 54785314 54785429 -104814354 + ORR1C2 LTR MaLR 5 124 -260 4 1002 1689 174 13 62 chr3 54785569 54785955 -104813828 - ORR1B2 LTR MaLR 0 367 1 4 1002 394 188 62 14 chr3 54786241 54786435 -104813348 + (TTATA)n Simple_repeat Simple_repeat 1 203 0 4 1002 354 280 64 27 chr3 54786444 54786631 -104813152 + L1ME1 LINE L1 5591 5784 -380 4 1002 834 87 0 0 chr3 54786659 54786774 -104813009 + B1_Mus1 SINE Alu 29 143 -5 4 1002 279 0 0 0 chr3 54786774 54786805 -104812978 + (TATG)n Simple_repeat Simple_repeat 2 32 0 4 1002 510 291 34 50 chr3 54786805 54787044 -104812739 + L1ME1 LINE L1 5829 6063 -116 4 1002 2957 116 14 0 chr3 54787120 54787559 -104812224 - Lx2A1 LINE L1 0 7008 6564 4 1003 729 0 0 0 chr3 54788589 54788670 -104811113 + (GAA)n Simple_repeat Simple_repeat 1 81 0 4 1003 32 0 0 0 chr3 54788787 54788819 -104810964 + AT_rich Low_complexity Low_complexity 1 32 0 4 1003 1804 225 31 26 chr3 54788832 54789248 -104810535 + Lx6 LINE L1 7012 7429 -31 4 1003 215 175 18 0 chr3 54789389 54789446 -104810337 + (TG)n Simple_repeat Simple_repeat 2 59 0 4 1003 342 0 0 0 chr3 54789854 54789892 -104809891 + (CAAAAA)n Simple_repeat Simple_repeat 4 41 0 4 1003 473 239 175 47 chr3 54790538 54790749 -104809034 - Lx8 LINE L1 -2 7471 7234 4 1003 738 241 58 73 chr3 54790845 54791105 -104808678 - Lx8 LINE L1 -409 7064 6809 4 1003 258 32 0 0 chr3 54791158 54791189 -104808594 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 4 1003 396 0 0 0 chr3 54791948 54791992 -104807791 + (TG)n Simple_repeat Simple_repeat 2 45 0 4 1003 998 157 141 5 chr3 54792232 54792431 -104807352 + URR1A DNA MER1_type 1 226 0 4 1003 267 295 0 13 chr3 54792487 54792566 -104807217 - MIR SINE MIR -111 151 74 4 1003 620 331 56 23 chr3 54794596 54794862 -104804921 - B4 SINE B4 -16 276 2 4 1003 360 0 0 0 chr3 54795158 54795198 -104804585 + (TCTA)n Simple_repeat Simple_repeat 2 41 0 4 1003 1170 266 72 84 chr3 54796630 54797238 -104802545 + MT2B LTR ERVL 1 601 0 4 1003 279 266 21 21 chr3 54797583 54797679 -104802104 - LTR81B LTR ERV1? -1176 217 122 4 1003 292 178 0 27 chr3 54798577 54798652 -104801131 + GA-rich Low_complexity Low_complexity 1 73 0 4 1003 722 266 116 40 chr3 54799370 54799672 -104800111 - MTD LTR MaLR -75 344 20 4 1003 880 39 16 16 chr3 54800747 54800876 -104798907 - RLTR10 LTR ERVK -3 387 259 4 1003 251 183 0 0 chr3 54800882 54800942 -104798841 - RLTR10 LTR ERVK -72 318 259 4 1003 1963 96 22 6 chr3 54800963 54801276 -104798507 - RLTR10 LTR ERVK -72 318 1 4 1003 225 0 0 0 chr3 54801543 54801568 -104798215 + (TG)n Simple_repeat Simple_repeat 2 26 0 4 1003 216 262 58 70 chr3 54801576 54801662 -104798121 - B1_Mus1 SINE Alu -50 98 14 4 1003 202 292 0 15 chr3 54801818 54801884 -104797899 + CT-rich Low_complexity Low_complexity 2 66 0 4 1003 573 153 0 0 chr3 54802185 54802309 -104797474 + (CAG)n Simple_repeat Simple_repeat 3 126 0 4 1003 253 123 31 0 chr3 54803040 54803105 -104796678 + T-rich Low_complexity Low_complexity 6 72 0 4 1003 577 187 26 13 chr3 54803491 54803619 -104796164 + (TGGG)n Simple_repeat Simple_repeat 1 129 0 4 1003 1303 91 416 0 chr3 54803619 54803850 -104795933 - ORR1A2 LTR MaLR 0 327 1 4 1003 577 200 23 11 chr3 54803850 54803969 -104795814 + (TGGG)n Simple_repeat Simple_repeat 1 121 0 5 1003 203 173 0 19 chr3 54804018 54804071 -104795712 + (TGGG)n Simple_repeat Simple_repeat 1 52 0 5 1003 339 269 127 35 chr3 54805135 54805308 -104794475 + MER5A DNA MER1_type 1 189 0 5 1003 952 240 109 32 chr3 54805326 54805610 -104794173 + MTE2b LTR MaLR 74 379 0 5 1003 766 217 44 110 chr3 54805662 54805890 -104793893 + B3 SINE B2 4 216 0 5 1003 732 288 136 30 chr3 54807328 54807658 -104792125 + MLT1A0 LTR MaLR 1 365 0 5 1003 222 366 88 9 chr3 54808266 54808379 -104791404 - MER5A DNA MER1_type -2 187 66 5 1003 312 237 10 40 chr3 54808823 54808924 -104790859 + MLT1A1 LTR MaLR 311 408 0 5 1003 603 320 54 67 chr3 54809527 54809989 -104789794 + MT2A LTR ERVL 14 469 -64 5 1003 1384 12 129 0 chr3 54810448 54810618 -104789165 + B2_Mm1a SINE B2 1 192 -1 5 1003 24 0 0 0 chr3 54810648 54810672 -104789111 + AT_rich Low_complexity Low_complexity 1 24 0 5 1003 744 79 59 0 chr3 54810681 54810833 -104788950 + (TATG)n Simple_repeat Simple_repeat 2 162 0 5 1003 216 208 19 0 chr3 54810871 54810924 -104788859 - B3A SINE B2 -139 59 6 5 1003 1218 108 0 0 chr3 54811016 54811352 -104788431 + (TGAG)n Simple_repeat Simple_repeat 1 336 0 5 1003 362 235 12 0 chr3 54811839 54811920 -104787863 + B1F SINE Alu 18 99 -50 5 1003 425 284 94 5 chr3 54811920 54812111 -104787672 + L1M5 LINE L1 5605 5812 -367 5 1003 574 104 36 22 chr3 54812186 54812267 -104787516 + polypyrimidine Low_complexity Low_complexity 59 141 0 5 1003 782 11 5 93 chr3 54812267 54812461 -104787322 + (TCC)n Simple_repeat Simple_repeat 2 178 0 5 1003 574 104 36 22 chr3 54812461 54812516 -104787267 + polypyrimidine Low_complexity Low_complexity 4 58 0 5 1003 477 328 0 0 chr3 54812539 54812667 -104787116 - B1F1 SINE Alu -21 128 1 5 1003 328 339 76 10 chr3 54812847 54813044 -104786739 + MIR SINE MIR 21 230 -32 5 1003 294 334 50 86 chr3 54813147 54813377 -104786406 - MIRb SINE MIR -13 255 19 5 1003 4056 118 79 11 chr3 54813965 54814600 -104785183 + RLTR33 LTR ERVK 1 678 0 5 1003 549 280 47 37 chr3 54815428 54815643 -104784140 + MLT1A0 LTR MaLR 78 294 -71 5 1003 183 274 16 16 chr3 54816340 54816403 -104783380 - L2a LINE L2 0 3426 3364 5 1003 301 257 135 29 chr3 54817694 54817798 -104781985 + PB1D9 SINE Alu 1 115 -5 5 1003 23 33 0 0 chr3 54818091 54818121 -104781662 + AT_rich Low_complexity Low_complexity 1 30 0 5 1003 1947 184 88 8 chr3 54818759 54819147 -104780636 + MTC LTR MaLR 3 421 0 5 1003 468 0 0 0 chr3 54819352 54819404 -104780379 + (CA)n Simple_repeat Simple_repeat 2 53 0 5 1003 270 277 43 0 chr3 54819455 54819549 -104780234 + CT-rich Low_complexity Low_complexity 5 102 0 5 1003 244 301 0 0 chr3 54819882 54819953 -104779830 + B1F1 SINE Alu 1 71 -46 5 1003 255 125 0 0 chr3 54821245 54821285 -104778498 + (GA)n Simple_repeat Simple_repeat 2 41 0 5 1003 241 247 32 53 chr3 54822294 54822388 -104777395 - B1_Mur2 SINE Alu -51 98 7 5 1003 2124 251 131 67 chr3 54823080 54823876 -104775907 - Lx8 LINE L1 -276 7197 6350 5 1003 1466 221 68 8 chr3 54823876 54824063 -104775720 - ORR1D1 LTR MaLR 0 374 178 5 1003 432 0 0 0 chr3 54824063 54824111 -104775672 + (GA)n Simple_repeat Simple_repeat 1 48 0 5 1003 1466 221 68 8 chr3 54824111 54824275 -104775508 - ORR1D1 LTR MaLR -197 177 3 5 1003 639 303 135 30 chr3 54824312 54825022 -104774761 + L1MEc LINE L1 698 1482 -4918 5 1003 728 203 39 0 chr3 54825521 54825674 -104774109 + B3A SINE B2 1 159 -39 5 1003 765 222 35 12 chr3 54826279 54826452 -104773331 + B3 SINE B2 40 216 0 5 1003 182 333 12 24 chr3 54827008 54827091 -104772692 - MIR SINE MIR -15 247 166 5 1003 1857 167 87 22 chr3 54827411 54827573 -104772210 + ORR1C1 LTR MaLR 1 178 -200 5 1003 252 0 0 0 chr3 54827573 54827601 -104772182 + (TC)n Simple_repeat Simple_repeat 1 28 0 5 1003 1857 167 87 22 chr3 54827601 54827793 -104771990 + ORR1C1 LTR MaLR 179 378 0 5 1003 252 0 0 0 chr3 54827815 54827843 -104771940 + (CA)n Simple_repeat Simple_repeat 1 28 0 5 1003 2210 183 151 16 chr3 54828891 54829441 -104770342 + RMER20B LTR ERVK 1 624 -3 5 1003 524 254 52 7 chr3 54829947 54830082 -104769701 + B1F SINE Alu 4 144 -5 5 1003 698 251 25 40 chr3 54831504 54831703 -104768080 - B3A SINE B2 -1 197 2 5 1003 240 211 19 0 chr3 54831722 54831774 -104768009 - PB1D10 SINE Alu -16 101 49 5 1003 315 221 29 12 chr3 54831803 54831898 -104767885 - L1MA5 LINE L1 -167 6136 6039 5 1003 360 314 82 10 chr3 54831956 54832152 -104767631 - B4A SINE B4 0 292 83 5 1003 1731 173 23 18 chr3 54833651 54833993 -104765790 + RMER4A LTR ERVK 1 344 -122 5 1003 812 87 20 7 chr3 54833993 54834143 -104765640 + (TC)n Simple_repeat Simple_repeat 2 153 0 5 1003 889 210 25 5 chr3 54834144 54834340 -104765443 + ORR1C2 LTR MaLR 185 384 0 5 1003 273 364 8 17 chr3 54834346 54834466 -104765317 + L2c LINE L2 3118 3236 -151 5 1003 2269 233 50 6 chr3 54836035 54836558 -104763225 - Lx2B LINE L1 0 7000 6455 5 1003 744 315 51 86 chr3 54837076 54837448 -104762335 + MTE-int LTR MaLR 118 476 -1104 5 1003 872 67 8 0 chr3 54837523 54837643 -104762140 + (TTTTC)n Simple_repeat Simple_repeat 3 123 0 5 1003 1397 180 24 11 chr3 54837660 54837947 -104761836 - Lx3A LINE L1 -13 6968 6678 5 1003 1542 310 131 22 chr3 54837958 54838677 -104761106 + MTE-int LTR MaLR 750 1546 -34 5 1003 347 73 0 18 chr3 54838705 54838761 -104761022 + (TC)n Simple_repeat Simple_repeat 2 56 0 5 1003 217 262 0 48 chr3 54838764 54838848 -104760935 + CT-rich Low_complexity Low_complexity 5 84 0 5 1003 2308 235 104 53 chr3 54839739 54839807 -104759976 + Lx6 LINE L1 6666 6764 -696 5 1003 312 27 0 0 chr3 54839807 54839844 -104759939 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 5 1003 2308 235 104 53 chr3 54839844 54840507 -104759276 + Lx6 LINE L1 6765 7433 -27 5 1003 557 280 89 71 chr3 54842154 54842451 -104757332 - B4 SINE B4 -18 274 7 5 1003 2317 117 6 0 chr3 54842879 54843204 -104756579 - ORR1A2 LTR MaLR 0 327 1 5 1003 1728 157 125 0 chr3 54844876 54845213 -104754570 + ORR1C2 LTR MaLR 1 379 -5 5 1003 8234 57 12 4 chr3 54845391 54846823 -104752960 + L1_Mus1 LINE L1 5154 6637 -1 5 1003 22 0 0 0 chr3 54848197 54848219 -104751564 + AT_rich Low_complexity Low_complexity 1 22 0 5 1003 249 109 36 18 chr3 54850376 54850432 -104749351 + CT-rich Low_complexity Low_complexity 1 57 0 5 1003 379 298 18 0 chr3 54850686 54850800 -104748983 - PB1D10 SINE Alu -1 116 1 5 1003 1090 72 0 0 chr3 54851764 54851902 -104747881 - B1_Mus2 SINE Alu -8 139 2 5 1003 858 152 12 12 chr3 54854163 54854336 -104745447 + CT-rich Low_complexity Low_complexity 2 174 0 5 1003 428 0 19 0 chr3 54855980 54856032 -104743751 + (TC)n Simple_repeat Simple_repeat 2 54 0 5 1003 219 69 0 0 chr3 54856032 54856060 -104743723 + (TATG)n Simple_repeat Simple_repeat 2 30 0 5 1003 549 80 0 0 chr3 54856106 54856181 -104743602 + (TATG)n Simple_repeat Simple_repeat 4 78 0 5 1003 287 315 11 0 chr3 54856776 54856868 -104742915 + ID_B1 SINE B4 99 191 -33 5 1003 469 241 122 14 chr3 54857005 54857144 -104742639 + RSINE1 SINE B4 10 163 -2 5 1003 213 292 0 0 chr3 54858023 54858071 -104741712 + (CA)n Simple_repeat Simple_repeat 2 49 0 5 1003 435 38 0 0 chr3 54858148 54858201 -104741582 + (CA)n Simple_repeat Simple_repeat 1 53 0 5 1003 29 0 0 0 chr3 54858937 54858966 -104740817 + GC_rich Low_complexity Low_complexity 1 29 0 5 1003 22 35 0 0 chr3 54859196 54859225 -104740558 + GC_rich Low_complexity Low_complexity 1 29 0 5 1003 206 313 12 12 chr3 54859991 54860075 -104739708 + (TATATG)n Simple_repeat Simple_repeat 1 84 0 5 1003 192 125 0 0 chr3 54860075 54860107 -104739676 + (CA)n Simple_repeat Simple_repeat 1 32 0 5 1003 336 274 0 10 chr3 54862429 54862525 -104737258 - Lx8 LINE L1 -773 6700 6606 5 1003 387 0 0 0 chr3 54862701 54862744 -104737039 + (CA)n Simple_repeat Simple_repeat 2 44 0 5 1003 652 153 51 0 chr3 54863156 54863293 -104736490 - L1_Mur2 LINE L1 -3850 2027 1884 5 1003 1204 62 0 0 chr3 54863681 54863825 -104735958 - B1_Mus1 SINE Alu 0 148 5 5 1003 281 26 26 0 chr3 54864294 54864332 -104735451 + (TG)n Simple_repeat Simple_repeat 1 39 0 5 1003 563 314 0 0 chr3 54864354 54864494 -104735289 - B3 SINE B2 -70 146 7 5 1003 216 97 0 0 chr3 54864495 54864526 -104735257 + (CA)n Simple_repeat Simple_repeat 1 31 0 5 1003 607 232 157 26 chr3 54864538 54864768 -104735015 - Lx8 LINE L1 -1606 5867 5608 5 1003 232 158 26 0 chr3 54864771 54864809 -104734974 - Lx7 LINE L1 -2049 5647 5609 5 1003 423 298 114 38 chr3 54864809 54865071 -104734712 - Lx8 LINE L1 -232 5648 5367 5 1003 553 268 77 12 chr3 54865071 54865241 -104734542 + MTD LTR MaLR 1 181 -238 5 1003 873 184 160 17 chr3 54865398 54865635 -104734148 + MTD LTR MaLR 149 419 0 5 1003 1313 287 88 98 chr3 54865638 54865918 -104733865 + MTD-int LTR MaLR 2 297 -801 5 1003 3645 151 15 16 chr3 54865918 54866531 -104733252 - Lx2 LINE L1 -11 6986 6375 5 1003 1313 287 88 98 chr3 54866531 54867353 -104732430 + MTD-int LTR MaLR 298 1093 -5 5 1003 263 312 31 16 chr3 54867370 54867497 -104732286 - L1M LINE L1 -915 5382 5254 5 1003 660 264 51 0 chr3 54867539 54867755 -104732028 - MTE2b LTR MaLR -152 227 1 5 1003 199 171 0 0 chr3 54868006 54868047 -104731736 + L2c LINE L2 3347 3387 0 5 1003 538 210 80 0 chr3 54868134 54868272 -104731511 - B1F SINE Alu 0 149 1 5 1003 225 191 0 41 chr3 54869293 54869342 -104730441 + B1_Mus2 SINE Alu 101 147 0 5 1003 771 216 7 7 chr3 54869412 54869566 -104730217 + B3A SINE B2 1 154 -44 5 1003 377 66 16 0 chr3 54869566 54869627 -104730156 + (CA)n Simple_repeat Simple_repeat 1 62 0 5 1003 492 160 0 0 chr3 54869634 54869753 -104730030 + GA-rich Low_complexity Low_complexity 1 119 0 5 1003 251 283 109 0 chr3 54869804 54869896 -104729887 + MER3 DNA MER1_type 48 149 -60 5 1003 335 282 0 0 chr3 54870684 54870762 -104729021 - 5S rRNA rRNA -42 79 2 5 1003 566 192 257 14 chr3 54871562 54871820 -104727963 + RLTR20A2 LTR ERVK 4 312 -222 5 1003 489 180 8 75 chr3 54871812 54871932 -104727851 + RLTR20A2 LTR ERVK 416 527 -51 5 1003 3049 200 57 20 chr3 54871962 54872996 -104726787 + L1_Mur3 LINE L1 92 1285 -6443 6 1003 198 0 0 0 chr3 54872996 54873018 -104726765 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 6 1003 3049 186 42 30 chr3 54873018 54873046 -104726737 + L1_Mur3 LINE L1 1286 1309 -6419 6 1003 1222 138 71 31 chr3 54873046 54873300 -104726483 + RMER12 LTR ERVK 623 886 -436 6 1003 378 0 0 0 chr3 54873303 54873345 -104726438 + (TC)n Simple_repeat Simple_repeat 2 43 0 6 1003 849 188 78 82 chr3 54873354 54873563 -104726220 + RMER12 LTR ERVK 976 1175 -147 6 1003 185 0 40 0 chr3 54873563 54873588 -104726195 + (GA)n Simple_repeat Simple_repeat 2 27 0 6 1003 849 204 101 55 chr3 54873588 54873655 -104726128 + RMER12 LTR ERVK 1176 1302 -20 6 1003 19934 143 37 29 chr3 54873681 54876829 -104722954 + L1_Mur3 LINE L1 1443 4627 -1253 6 1003 197 33 0 32 chr3 54876829 54876860 -104722923 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 6 1003 19934 143 37 29 chr3 54876860 54877465 -104722318 + L1_Mur3 LINE L1 4628 5227 -653 6 1003 264 122 0 0 chr3 54877467 54877508 -104722275 + (CA)n Simple_repeat Simple_repeat 2 42 0 6 1003 21 0 0 0 chr3 54877711 54877732 -104722051 + AT_rich Low_complexity Low_complexity 1 21 0 6 1003 858 219 49 10 chr3 54877857 54878060 -104721723 + B3 SINE B2 4 214 -2 6 1003 423 0 0 0 chr3 54880222 54880269 -104719514 + (CA)n Simple_repeat Simple_repeat 1 47 0 6 1003 815 158 50 0 chr3 54880559 54880698 -104719085 + B1_Mur1 SINE Alu 2 147 -2 6 1003 534 16 0 0 chr3 54881004 54881067 -104718716 + (TG)n Simple_repeat Simple_repeat 1 63 0 6 1003 641 257 24 12 chr3 54881340 54881355 -104718428 - B3A SINE B2 -27 171 157 6 1003 438 20 0 0 chr3 54881355 54881406 -104718377 + (TG)n Simple_repeat Simple_repeat 2 52 0 6 1003 655 222 14 14 chr3 54881406 54881559 -104718224 - B3 SINE B2 -42 156 1 6 1003 1558 224 44 87 chr3 54881625 54882152 -104717631 - RLTR18B LTR ERVK -6 506 3 6 1003 24 0 0 0 chr3 54882483 54882507 -104717276 + AT_rich Low_complexity Low_complexity 1 24 0 6 1003 294 253 0 0 chr3 54882987 54883070 -104716713 + (CA)n Simple_repeat Simple_repeat 2 84 0 6 1003 414 0 0 0 chr3 54883846 54883892 -104715891 + (TTTA)n Simple_repeat Simple_repeat 4 49 0 6 1003 403 333 23 17 chr3 54885051 54885225 -104714558 - LTR75 LTR ERVL -18 544 370 6 1003 457 279 71 41 chr3 54885386 54885674 -104714109 + L1M5 LINE L1 2783 3091 -3055 6 1003 1373 219 49 32 chr3 54885674 54886022 -104713761 + ORR1E LTR MaLR 4 357 -2 6 1003 376 292 113 60 chr3 54886022 54886068 -104713715 + L1M5 LINE L1 3092 3135 -3011 6 1003 405 258 115 60 chr3 54886128 54886372 -104713411 + L1M5 LINE L1 4811 5063 -1083 6 1003 671 178 13 70 chr3 54887936 54888093 -104711690 - B1_Mur2 SINE Alu 0 149 2 6 1003 309 51 0 0 chr3 54889530 54889569 -104710214 + (CA)n Simple_repeat Simple_repeat 1 39 0 6 1003 789 11 0 0 chr3 54889569 54889659 -104710124 + (GA)n Simple_repeat Simple_repeat 1 90 0 6 1003 384 77 0 0 chr3 54890551 54890603 -104709180 + (TCTCCC)n Simple_repeat Simple_repeat 3 54 0 6 1003 341 266 0 60 chr3 54890666 54890696 -104709087 - B4A SINE B4 -8 284 259 6 1003 249 33 0 0 chr3 54890696 54890726 -104709057 + (TG)n Simple_repeat Simple_repeat 2 31 0 6 1003 341 266 0 60 chr3 54890726 54890795 -104708988 - B4A SINE B4 -34 258 191 6 1003 1005 188 35 0 chr3 54891917 54892119 -104707664 - RLTR42 LTR ERVK -30 209 1 6 1003 12428 150 40 31 chr3 54892119 54894003 -104705780 - RLTR42-int LTR ERVK 0 5522 3617 6 1003 2129 146 88 8 chr3 54894003 54894368 -104705415 - ORR1B1 LTR MaLR 0 394 1 6 1003 12428 150 40 31 chr3 54894368 54894797 -104704986 - RLTR42-int LTR ERVK -1906 3616 3188 6 1003 5224 142 67 84 chr3 54894786 54895733 -104704050 - RLTR42-int LTR ERVK -2581 2941 2016 6 1003 2822 67 78 0 chr3 54895733 54896104 -104703679 - MTB LTR MaLR 0 400 1 6 1003 5224 142 67 84 chr3 54896104 54896249 -104703534 - RLTR42-int LTR ERVK -3507 2015 1868 6 1003 1867 119 35 0 chr3 54896381 54896691 -104703092 + ORR1A4 LTR MaLR 1 321 -8 6 1003 7297 196 81 78 chr3 54896777 54896854 -104702929 - RLTR42-int LTR ERVK -3658 1864 1786 6 1003 2250 89 6 66 chr3 54896854 54897202 -104702581 - ORR1A2 LTR MaLR 0 327 1 6 1003 7297 196 81 78 chr3 54897202 54898260 -104701523 - RLTR42-int LTR ERVK -3737 1785 754 6 1003 1200 48 0 14 chr3 54898260 54898408 -104701375 + B1_Mus1 SINE Alu 2 147 -1 6 1003 7297 196 81 78 chr3 54898408 54898829 -104700954 - RLTR42-int LTR ERVK -4769 753 338 6 1003 5227 52 5 18 chr3 54898829 54899492 -104700291 - L1Md_F2 LINE L1 -3 6579 5926 6 1003 7297 196 81 78 chr3 54899492 54899791 -104699992 - RLTR42-int LTR ERVK -5185 337 1 6 1003 424 176 0 0 chr3 54899920 54899994 -104699789 - RLTR42 LTR ERVK -159 80 7 6 1003 310 256 12 24 chr3 54900143 54900227 -104699556 + MER2B DNA MER2_type 232 314 -22 6 1003 182 118 0 29 chr3 54900906 54900941 -104698842 + (CA)n Simple_repeat Simple_repeat 2 35 0 6 1003 938 221 36 0 chr3 54900941 54901136 -104698647 - B3 SINE B2 -14 202 1 6 1003 474 18 0 0 chr3 54901565 54901620 -104698163 + (GA)n Simple_repeat Simple_repeat 1 55 0 6 1003 180 0 0 0 chr3 54901952 54901972 -104697811 + (A)n Simple_repeat Simple_repeat 1 20 0 6 1003 938 242 14 9 chr3 54902572 54902785 -104696998 - B3 SINE B2 0 216 3 6 1003 240 292 79 61 chr3 54903583 54903704 -104696079 + L1MC4a LINE L1 7708 7831 -51 6 1003 474 18 0 0 chr3 54903704 54903759 -104696024 + (TTTTC)n Simple_repeat Simple_repeat 2 56 0 6 1003 1149 44 0 0 chr3 54903760 54903895 -104695888 - B1_Mus2 SINE Alu -12 135 1 6 1003 240 292 79 61 chr3 54903895 54903935 -104695848 + L1MC4a LINE L1 7832 7874 -8 6 1003 231 36 0 0 chr3 54904290 54904318 -104695465 + (TG)n Simple_repeat Simple_repeat 2 29 0 6 1003 695 207 207 0 chr3 54904656 54904835 -104694948 - B3 SINE B2 0 216 1 6 1003 2964 119 81 82 chr3 54904888 54905667 -104694116 - RLTR13D1 LTR ERVK -55 968 1 6 1003 3036 56 48 0 chr3 54906061 54906453 -104693330 - RLTR10A LTR ERVK 0 411 1 6 1003 1164 197 29 5 chr3 54906815 54907024 -104692759 + B3 SINE B2 1 214 -2 6 1003 354 269 21 0 chr3 54907039 54907132 -104692651 + PB1D10 SINE Alu 23 117 0 6 1003 183 80 0 0 chr3 54907157 54907182 -104692601 + (TTTA)n Simple_repeat Simple_repeat 4 28 0 6 1003 3085 208 56 117 chr3 54907185 54908089 -104691694 - RMER1C Other Other -17 1325 477 6 1003 186 133 0 0 chr3 54908746 54908776 -104691007 + (T)n Simple_repeat Simple_repeat 1 30 0 6 1003 484 100 0 0 chr3 54908783 54908853 -104690930 - B1_Mus2 SINE Alu -75 72 3 6 1003 233 228 58 134 chr3 54909513 54909685 -104690098 - RLTR26 LTR ERVK -243 399 241 6 1003 285 314 50 28 chr3 54910376 54910517 -104689266 - MIRb SINE MIR -53 215 72 6 1003 4720 36 11 2 chr3 54910562 54911117 -104688666 + LTRIS2 LTR ERV1 5 564 0 6 1003 21 0 0 0 chr3 54911537 54911558 -104688225 + AT_rich Low_complexity Low_complexity 1 21 0 6 1003 1394 85 16 0 chr3 54911563 54911752 -104688031 + B2_Mm2 SINE B2 2 193 -2 6 1003 1003 169 67 34 chr3 54911759 54911967 -104687816 - B3 SINE B2 0 216 2 6 1003 243 318 44 35 chr3 54912571 54912685 -104687098 - B3A SINE B2 -78 120 6 6 1003 385 342 14 111 chr3 54913221 54913428 -104686355 - Arthur1 DNA Tip100 -3514 433 247 6 1003 286 248 25 127 chr3 54913794 54913951 -104685832 + L1M4b LINE L1 101 241 -7093 6 1003 1050 143 0 0 chr3 54914133 54914469 -104685314 + (TG)n Simple_repeat Simple_repeat 1 336 0 6 1003 249 278 85 9 chr3 54914554 54914685 -104685098 + Charlie2b DNA MER1_type 1739 1889 -893 6 1003 288 0 0 0 chr3 54914685 54914717 -104685066 + (CA)n Simple_repeat Simple_repeat 2 33 0 6 1003 225 281 192 13 chr3 54914717 54914809 -104684974 + Charlie2b DNA MER1_type 1890 2001 -781 6 1003 647 267 70 129 chr3 54914833 54915191 -104684592 - MTE2a LTR MaLR 0 419 24 6 1003 493 273 68 85 chr3 54915297 54915454 -104684329 - L1M4 LINE L1 -623 5555 5400 6 1003 207 0 0 0 chr3 54915454 54915477 -104684306 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 6 1003 1120 44 0 0 chr3 54915477 54915613 -104684170 - B1_Mm SINE Alu -10 137 2 6 1003 493 276 72 83 chr3 54915613 54915741 -104684042 - L1M4 LINE L1 -765 5399 5266 6 1003 240 269 144 25 chr3 54917258 54917418 -104682365 + L1MA7 LINE L1 6040 6218 -73 6 1003 253 243 28 14 chr3 54917439 54917510 -104682273 + B3A SINE B2 1 72 -126 6 1003 24 53 0 0 chr3 54917541 54917579 -104682204 + AT_rich Low_complexity Low_complexity 1 38 0 6 1003 250 309 181 40 chr3 54917905 54918030 -104681753 + B4 SINE B4 48 196 -96 6 1003 189 0 0 0 chr3 54918030 54918051 -104681732 + (CAAA)n Simple_repeat Simple_repeat 4 24 0 6 1003 250 309 181 40 chr3 54918051 54918124 -104681659 + B4 SINE B4 197 274 -18 6 1003 525 144 0 0 chr3 54918180 54918298 -104681485 + (GA)n Simple_repeat Simple_repeat 1 118 0 6 1003 204 216 0 0 chr3 54918299 54918350 -104681433 + (CA)n Simple_repeat Simple_repeat 2 52 0 6 1003 228 100 0 0 chr3 54918352 54918392 -104681391 + (GA)n Simple_repeat Simple_repeat 2 41 0 6 1004 468 245 87 0 chr3 54919263 54919459 -104680324 + Charlie5 DNA MER1_type 2406 2618 -6 6 1004 399 296 116 64 chr3 54919680 54920085 -104679698 - HAL1 LINE L1 -272 2235 1810 6 1004 370 264 107 59 chr3 54920503 54920672 -104679111 - B4 SINE B4 -5 287 111 6 1004 1474 157 283 14 chr3 54921863 54922230 -104677553 - RMER4A LTR ERVK 0 466 1 6 1004 841 84 8 22 chr3 54922294 54922428 -104677355 - B2_Mm2 SINE B2 -14 181 50 6 1004 1782 178 72 37 chr3 54922650 54923052 -104676731 - MTC LTR MaLR -5 416 1 6 1004 282 277 46 72 chr3 54924986 54925138 -104674645 + L1MA7 LINE L1 6144 6291 0 6 1004 249 33 0 0 chr3 54926442 54926472 -104673311 + (CAGA)n Simple_repeat Simple_repeat 2 31 0 6 1004 230 115 19 0 chr3 54926771 54926823 -104672960 + (TTTTG)n Simple_repeat Simple_repeat 2 54 0 6 1004 1145 82 0 7 chr3 54926824 54926972 -104672811 - B1_Mm SINE Alu 0 147 1 6 1004 596 251 127 13 chr3 54927385 54927665 -104672118 - MTEb LTR MaLR 0 379 6 6 1004 333 0 0 0 chr3 54928511 54928548 -104671235 + (CA)n Simple_repeat Simple_repeat 1 37 0 6 1004 234 150 0 0 chr3 54929019 54929059 -104670724 + (T)n Simple_repeat Simple_repeat 1 40 0 6 1004 180 0 0 0 chr3 54929063 54929083 -104670700 + (TTA)n Simple_repeat Simple_repeat 2 21 0 6 1004 883 69 114 0 chr3 54929093 54929224 -104670559 - B1_Mm SINE Alu -1 146 1 6 1004 440 276 47 0 chr3 54931108 54931235 -104668548 + B3 SINE B2 84 216 0 6 1004 22 0 0 0 chr3 54932729 54932751 -104667032 + AT_rich Low_complexity Low_complexity 1 22 0 6 1004 520 243 104 50 chr3 54933276 54933536 -104666247 - MER73 LTR ERVL -281 363 90 6 1004 449 266 206 9 chr3 54933855 54934083 -104665700 + B4A SINE B4 2 274 -18 6 1004 247 345 26 9 chr3 54934202 54934316 -104665467 - MIR SINE MIR -67 141 26 6 1004 2049 119 80 48 chr3 54936581 54936979 -104662804 - MTC LTR MaLR 0 421 11 6 1004 1442 222 118 9 chr3 54940295 54940754 -104659029 - Lx8 LINE L1 -5 7468 6960 6 1004 282 321 46 0 chr3 54941442 54941551 -104658232 + MER58A DNA MER1_type 7 120 -104 6 1004 316 341 71 104 chr3 54941732 54942040 -104657743 - MER21B LTR ERV1 -554 309 12 7 1004 304 223 0 222 chr3 54942040 54942184 -104657599 - B3A SINE B2 0 198 87 7 1004 1396 103 0 30 chr3 54942828 54943029 -104656754 - B2_Mm2 SINE B2 0 195 1 7 1004 405 261 39 0 chr3 54944305 54944464 -104655319 - B3A SINE B2 -46 170 2 7 1004 230 234 0 21 chr3 54944913 54944961 -104654822 + ID4_ SINE ID 35 81 -2 7 1004 932 146 7 0 chr3 54945013 54945157 -104654626 - B1_Mus2 SINE Alu -2 145 1 7 1004 398 263 8 78 chr3 54945551 54945679 -104654104 - RSINE1 SINE B4 -40 125 7 7 1004 333 0 0 0 chr3 54946636 54946673 -104653110 + (CA)n Simple_repeat Simple_repeat 1 37 0 7 1004 1366 240 83 8 chr3 54947071 54947445 -104652338 + MTD LTR MaLR 18 419 0 7 1004 1856 99 18 11 chr3 54947818 54948095 -104651688 - Lx LINE L1 -7 6647 6369 7 1004 494 224 105 101 chr3 54948763 54948910 -104650873 + B3 SINE B2 8 164 -52 7 1004 432 0 0 0 chr3 54948910 54948958 -104650825 + (CA)n Simple_repeat Simple_repeat 2 49 0 7 1004 494 262 13 60 chr3 54948958 54948979 -104650804 + B3 SINE B2 165 182 -34 7 1004 319 173 25 0 chr3 54949273 54949354 -104650429 + CT-rich Low_complexity Low_complexity 3 85 0 7 1004 1961 125 22 26 chr3 54949369 54949682 -104650101 - Lx3B LINE L1 -1 6972 6661 7 1004 23 33 0 0 chr3 54950271 54950301 -104649482 + AT_rich Low_complexity Low_complexity 1 30 0 7 1004 273 29 0 0 chr3 54951205 54951239 -104648544 + (CA)n Simple_repeat Simple_repeat 2 35 0 7 1004 1324 110 36 27 chr3 54951488 54951712 -104648071 + URR1A DNA MER1_type 1 226 0 7 1004 1101 281 157 48 chr3 54951712 54952603 -104647180 - L1M2 LINE L1 -1328 4815 3828 7 1004 430 306 158 19 chr3 54952632 54952949 -104646834 + RMER5 LTR ERV1 174 534 0 7 1004 328 268 156 8 chr3 54953520 54953648 -104646135 - B1F1 SINE Alu -1 148 2 7 1004 393 22 0 0 chr3 54954334 54954380 -104645403 + (TG)n Simple_repeat Simple_repeat 1 46 0 7 1004 349 250 127 45 chr3 54954429 54954563 -104645220 - B4 SINE B4 -146 146 2 7 1004 574 260 54 24 chr3 54956656 54956861 -104642922 - B3 SINE B2 -5 211 1 7 1004 225 128 0 0 chr3 54956938 54956985 -104642798 + (TA)n Simple_repeat Simple_repeat 1 47 0 7 1004 387 0 0 0 chr3 54957930 54957973 -104641810 + (TG)n Simple_repeat Simple_repeat 2 44 0 7 1004 473 295 90 39 chr3 54959378 54959710 -104640073 + LTR16B2 LTR ERVL 105 453 -9 7 1004 410 277 10 0 chr3 54960614 54960715 -104639068 + U5 snRNA snRNA 1 102 -14 7 1004 414 0 0 0 chr3 54961117 54961163 -104638620 + (TTTA)n Simple_repeat Simple_repeat 3 48 0 7 1004 4662 174 53 109 chr3 54961165 54962217 -104637566 - RMER1B Other Other -30 1036 44 7 1004 243 298 29 13 chr3 54963787 54963879 -104635904 + MIRb SINE MIR 5 99 -177 7 1004 297 0 0 0 chr3 54963891 54963924 -104635859 + (TG)n Simple_repeat Simple_repeat 1 33 0 7 1004 347 341 182 0 chr3 54963946 54964122 -104635661 - B4A SINE B4 -44 248 41 7 1004 1140 88 0 0 chr3 54964424 54964572 -104635211 - B1_Mus1 SINE Alu 0 148 1 7 1004 4329 23 12 0 chr3 54966122 54966609 -104633174 - MT2_Mm LTR ERVL 0 493 1 7 1004 509 335 42 8 chr3 54968129 54968367 -104631416 - MER68 LTR ERVL 0 563 318 7 1004 352 281 112 17 chr3 54969558 54969957 -104629826 + L1ME3A LINE L1 5566 6028 -145 7 1004 1932 61 23 8 chr3 54971152 54971415 -104628368 + L1Md_F2 LINE L1 6304 6570 -12 7 1004 247 276 68 45 chr3 54972230 54972363 -104627420 - L1MB3 LINE L1 -76 6108 5962 7 1004 365 243 35 11 chr3 54972424 54972615 -104627168 - L1MB3 LINE L1 -321 5862 5657 7 1004 241 322 84 19 chr3 54972785 54972940 -104626843 - Lx9 LINE L1 -1652 5992 5828 7 1004 780 307 134 22 chr3 54972936 54973562 -104626221 - L1_Mur3 LINE L1 -82 5798 5103 7 1004 448 350 101 14 chr3 54973826 54974104 -104625679 - L1M4 LINE L1 -5578 964 663 7 1004 229 295 66 93 chr3 54974367 54974625 -104625158 - L1M4 LINE L1 -6255 287 37 7 1004 24 32 0 0 chr3 54975621 54975652 -104624131 + AT_rich Low_complexity Low_complexity 1 31 0 7 1004 432 43 14 41 chr3 54976319 54976392 -104623391 + (TATG)n Simple_repeat Simple_repeat 4 74 0 7 1004 1355 242 39 72 chr3 54976414 54976829 -104622954 + Lx8 LINE L1 7072 7472 -1 7 1004 735 276 184 20 chr3 54978033 54978380 -104621403 + MTD LTR MaLR 15 418 -1 7 1004 294 303 0 0 chr3 54978382 54978458 -104621325 - PB1D10 SINE Alu -40 77 2 7 1004 350 190 63 0 chr3 54978752 54978831 -104620952 - B4 SINE B4 -208 84 1 7 1004 295 216 13 13 chr3 54979036 54979111 -104620672 + MTD LTR MaLR 345 419 0 7 1004 231 318 0 0 chr3 54979111 54979172 -104620611 - PB1D10 SINE Alu -33 84 24 7 1004 291 386 32 7 chr3 54979760 54979914 -104619869 - MLT1J-int LTR MaLR -312 1075 918 7 1004 979 237 78 19 chr3 54980095 54980366 -104619417 + B4A SINE B4 3 289 -3 7 1004 189 0 0 0 chr3 54980401 54980422 -104619361 + (TC)n Simple_repeat Simple_repeat 1 21 0 7 1004 225 0 0 0 chr3 54980422 54980446 -104619337 + (CA)n Simple_repeat Simple_repeat 1 25 0 7 1004 441 0 0 0 chr3 54981026 54981075 -104618708 + (CA)n Simple_repeat Simple_repeat 2 50 0 7 1004 957 291 12 36 chr3 54981873 54982208 -104617575 - MLT1A0 LTR MaLR -15 350 24 7 1004 22 0 0 0 chr3 54983078 54983100 -104616683 + AT_rich Low_complexity Low_complexity 1 22 0 7 1004 547 269 13 57 chr3 54983130 54983153 -104616630 - B3A SINE B2 -15 183 165 7 1004 316 0 22 22 chr3 54983153 54983198 -104616585 + (TG)n Simple_repeat Simple_repeat 2 46 0 7 1004 608 250 8 1 chr3 54983198 54983332 -104616451 - B3 SINE B2 -51 165 33 7 1004 298 143 68 7 chr3 54983877 54984025 -104615758 + (TA)n Simple_repeat Simple_repeat 1 157 0 7 1004 255 152 0 0 chr3 54984113 54984159 -104615624 + (TAGA)n Simple_repeat Simple_repeat 4 49 0 7 1004 508 244 63 0 chr3 54984530 54984657 -104615126 - MER2 DNA MER2_type -22 323 189 7 1004 299 269 94 69 chr3 54984951 54985062 -104614721 - MER2 DNA MER2_type -152 193 76 7 1004 601 181 158 0 chr3 54985062 54985189 -104614594 - B1_Mur2 SINE Alu -1 148 2 7 1004 299 269 94 69 chr3 54985189 54985237 -104614546 - MER2 DNA MER2_type -270 75 30 7 1004 213 196 0 38 chr3 54988181 54988234 -104611549 + CT-rich Low_complexity Low_complexity 1 51 0 7 1004 306 0 0 0 chr3 54988341 54988375 -104611408 + (TG)n Simple_repeat Simple_repeat 2 35 0 7 1004 912 262 43 70 chr3 54988937 54989237 -104610546 + B4A SINE B4 1 292 0 7 1004 270 226 58 10 chr3 54989245 54989348 -104610435 + (CA)n Simple_repeat Simple_repeat 2 109 0 7 1004 286 258 37 0 chr3 54989660 54989764 -104610019 + PB1D10 SINE Alu 5 114 -6 7 1004 632 333 98 10 chr3 54990655 54990952 -104608831 + MLT1A0 LTR MaLR 43 365 0 7 1004 376 333 85 36 chr3 54990974 54990991 -104608792 + B4A SINE B4 56 71 -221 7 1004 845 276 64 32 chr3 54990991 54991272 -104608511 + B4A SINE B4 3 292 0 7 1004 484 333 85 36 chr3 54991272 54991478 -104608305 + B4 SINE B4 72 290 -2 7 1004 338 303 0 0 chr3 54992188 54992280 -104607503 - RMER30 DNA MER1_type -15 187 96 7 1004 697 253 47 16 chr3 54992280 54992473 -104607310 - B3 SINE B2 -17 199 1 7 1004 818 159 22 0 chr3 54992623 54992761 -104607022 + B1_Mur3 SINE Alu 2 142 -7 7 1004 240 86 0 0 chr3 54992768 54992803 -104606980 + (TAA)n Simple_repeat Simple_repeat 2 36 0 7 1004 551 277 70 22 chr3 54995205 54995434 -104604349 + L1MA9 LINE L1 6002 6241 -71 7 1004 213 159 0 0 chr3 54996692 54996736 -104603047 + CT-rich Low_complexity Low_complexity 2 45 0 7 1004 675 225 117 38 chr3 54997333 54997550 -104602233 + B4 SINE B4 26 260 -32 7 1004 415 0 36 0 chr3 54997550 54997605 -104602178 + (TC)n Simple_repeat Simple_repeat 1 57 0 7 1004 675 225 117 38 chr3 54997605 54997627 -104602156 + B4 SINE B4 261 284 -8 7 1004 648 233 183 0 chr3 54997671 54997851 -104601932 + B3 SINE B2 1 213 -3 7 1004 689 143 23 0 chr3 54997883 54998016 -104601767 - URR1B DNA MER1_type -7 218 83 7 1004 894 212 77 10 chr3 54998205 54998400 -104601383 - B3 SINE B2 -8 208 1 7 1004 965 223 15 0 chr3 55001559 55001756 -104598027 + B3 SINE B2 6 205 -11 1 1004 35625 73 6 12 chr3 55001775 55008150 -104591633 - L1Md_F2 LINE L1 -19 6563 237 2 1004 648 278 80 9 chr3 55008729 55008954 -104590829 - MER2 DNA MER2_type -13 332 92 3 1004 251 275 12 36 chr3 55009260 55009343 -104590440 + L2a LINE L2 3278 3358 -68 4 1004 616 222 134 26 chr3 55010437 55010631 -104589152 - B3 SINE B2 0 216 2 5 1004 211 28 27 27 chr3 55010775 55010812 -104588971 + (TTTTG)n Simple_repeat Simple_repeat 3 39 0 6 1004 1175 210 189 9 chr3 55010844 55011194 -104588589 - MTD LTR MaLR -6 413 1 7 1004 552 15 0 0 chr3 55011225 55011290 -104588493 + (CA)n Simple_repeat Simple_repeat 1 65 0 8 1004 372 284 0 0 chr3 55012692 55012780 -104587003 - RSINE1 SINE B4 0 165 78 9 1004 283 314 82 19 chr3 55014367 55014526 -104585257 - RMER15 LTR ERVL 0 575 407 1 1004 22 0 0 0 chr3 55014784 55014806 -104584977 + AT_rich Low_complexity Low_complexity 1 22 0 1 1004 533 365 10 5 chr3 55014940 55015141 -104584642 - B4A SINE B4 -7 285 84 1 1004 3575 62 0 37 chr3 55015741 55016231 -104583552 + L1_Mus4 LINE L1 6165 6636 0 1 1004 180 0 0 0 chr3 55017192 55017212 -104582571 + (TTTTA)n Simple_repeat Simple_repeat 3 22 0 1 1004 920 212 16 0 chr3 55017319 55017508 -104582275 - B3 SINE B2 -24 192 1 1 1004 646 203 0 0 chr3 55019047 55019165 -104580618 + B1F2 SINE Alu 32 149 0 1 1004 185 191 87 14 chr3 55019757 55019826 -104579957 - L2a LINE L2 -223 3203 3130 1 1004 557 250 93 20 chr3 55020934 55021085 -104578698 + B3A SINE B2 1 162 -36 1 1004 609 52 0 0 chr3 55021085 55021162 -104578621 + (CA)n Simple_repeat Simple_repeat 2 78 0 1 1004 180 77 0 0 chr3 55021567 55021593 -104578190 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 2 1004 255 336 9 0 chr3 55022257 55022367 -104577416 + L1M5 LINE L1 5222 5332 -814 2 1004 5223 120 37 3 chr3 55022440 55023620 -104576163 - Lx2 LINE L1 -754 6243 5019 2 1004 5893 75 10 5 chr3 55023620 55024483 -104575300 - RLTR13A3 LTR ERVK 0 978 111 2 1004 1948 152 19 48 chr3 55024492 55024866 -104574917 - Lx2 LINE L1 -853 5030 4668 2 1004 451 136 0 24 chr3 55024870 55024953 -104574830 + Lx2 LINE L1 6915 6995 -2 2 1004 675 199 156 31 chr3 55026539 55026731 -104573052 - B3 SINE B2 0 216 1 2 1004 189 0 0 0 chr3 55026768 55026789 -104572994 + (T)n Simple_repeat Simple_repeat 1 21 0 2 1004 496 348 14 0 chr3 55027168 55027309 -104572474 + RSINE1 SINE B4 1 143 -22 2 1004 310 319 29 29 chr3 55027367 55027506 -104572277 - RMER15 LTR ERVL -14 561 423 2 1004 227 359 38 19 chr3 55028127 55028286 -104571497 + MIRb SINE MIR 31 192 -76 2 1004 328 188 25 25 chr3 55028498 55028618 -104571165 + GA-rich Low_complexity Low_complexity 3 122 0 3 1004 695 289 26 21 chr3 55029552 55029743 -104570040 - ID_B1 SINE B4 -32 192 1 3 1004 22 0 0 0 chr3 55031732 55031754 -104568029 + AT_rich Low_complexity Low_complexity 1 22 0 3 1004 204 250 18 0 chr3 55031818 55031874 -104567909 + (TATATG)n Simple_repeat Simple_repeat 4 60 0 3 1004 21 0 0 0 chr3 55032063 55032084 -104567699 + AT_rich Low_complexity Low_complexity 1 21 0 3 1004 319 141 0 45 chr3 55032388 55032455 -104567328 + 4.5SRNA scRNA scRNA 23 86 -8 3 1004 816 60 17 0 chr3 55032396 55032513 -104567270 + B1_Mus2 SINE Alu 29 147 0 3 1004 231 241 119 9 chr3 55033239 55033348 -104566435 + L1MC4 LINE L1 1721 1841 -4374 3 1004 738 262 10 15 chr3 55033543 55033741 -104566042 + B3A SINE B2 2 198 0 3 1004 751 218 0 7 chr3 55033976 55034124 -104565659 - B1_Mur1 SINE Alu -1 148 2 3 1004 302 229 26 103 chr3 55034019 55034136 -104565647 - MT2B LTR ERVL -343 258 151 4 1004 509 276 25 20 chr3 55034166 55034348 -104565435 + L1MA4 LINE L1 5741 5921 -370 4 1004 1572 211 39 6 chr3 55034457 55034815 -104564968 + MTD LTR MaLR 33 402 -17 4 1004 542 286 171 11 chr3 55036626 55037000 -104562783 - L1M5 LINE L1 -369 5810 5377 4 1004 257 314 19 9 chr3 55037586 55037692 -104562091 + Charlie12 DNA MER1_type 2 108 -2765 4 1004 254 363 83 6 chr3 55037591 55037760 -104562023 - RMER30 DNA MER1_type -7 195 14 4 1004 649 308 12 6 chr3 55037780 55037950 -104561833 + B4A SINE B4 2 172 -120 4 1004 261 0 0 0 chr3 55038058 55038087 -104561696 + (CA)n Simple_repeat Simple_repeat 2 30 0 4 1004 28 48 0 0 chr3 55038110 55038152 -104561631 + AT_rich Low_complexity Low_complexity 1 42 0 4 1004 417 285 135 77 chr3 55038569 55038843 -104560940 + B4 SINE B4 3 292 0 4 1004 4569 75 28 3 chr3 55038906 55039519 -104560264 + Lx3_Mus LINE L1 6380 7007 -2 5 1004 1875 149 69 103 chr3 55041126 55041591 -104558192 - RLTR28B LTR ERVL -29 452 4 5 1004 492 243 109 38 chr3 55041878 55042062 -104557721 + MTD LTR MaLR 7 203 -216 5 1004 987 210 35 0 chr3 55042094 55042294 -104557489 - B3 SINE B2 -7 209 3 5 1004 1225 67 11 17 chr3 55042549 55042730 -104557053 + (CATATA)n Simple_repeat Simple_repeat 1 180 0 5 1004 549 183 117 0 chr3 55042840 55042960 -104556823 + B1_Mur1 SINE Alu 1 134 -15 5 1004 606 286 115 66 chr3 55042983 55043345 -104556438 + Lx8 LINE L1 6962 7320 -153 5 1004 2401 167 144 10 chr3 55043345 55043852 -104555931 - RMER15 LTR ERVL 0 575 1 5 1004 606 286 115 66 chr3 55043852 55043976 -104555807 + Lx8 LINE L1 7321 7472 -1 5 1004 207 88 0 0 chr3 55044263 55044297 -104555486 + (A)n Simple_repeat Simple_repeat 1 34 0 5 1004 285 338 21 76 chr3 55044544 55044688 -104555095 + RLTR33 LTR ERVK 458 593 -85 5 1004 1125 211 14 0 chr3 55044828 55045041 -104554742 + B3 SINE B2 1 216 0 6 1004 450 0 0 0 chr3 55047806 55047856 -104551927 + (TG)n Simple_repeat Simple_repeat 2 51 0 6 1004 403 123 0 30 chr3 55049565 55049632 -104550151 - ID_B1 SINE B4 -7 217 153 6 1005 201 244 0 0 chr3 55050900 55050941 -104548842 + CT-rich Low_complexity Low_complexity 2 42 0 6 1005 886 193 28 11 chr3 55053635 55053813 -104545970 - B3 SINE B2 -3 213 33 6 1005 270 339 53 33 chr3 55055361 55055605 -104544178 - L1MC4a LINE L1 -1987 5895 5647 6 1005 237 363 100 12 chr3 55057200 55057370 -104542413 + MLT1A LTR MaLR 154 338 -36 6 1005 1742 177 84 5 chr3 55057681 55058051 -104541732 - MTD LTR MaLR 0 419 21 6 1005 414 324 27 22 chr3 55058141 55058324 -104541459 + MIRb SINE MIR 22 205 -63 6 1005 218 343 0 91 chr3 55058469 55058546 -104541237 - ID4 SINE ID -9 74 5 6 1005 219 167 0 0 chr3 55058732 55058774 -104541009 + (TATATG)n Simple_repeat Simple_repeat 1 42 0 7 1005 207 0 0 0 chr3 55058947 55058970 -104540813 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 7 1005 634 258 85 30 chr3 55060825 55061025 -104538758 - Lx8 LINE L1 -9 7464 7254 7 1005 288 0 0 0 chr3 55063019 55063051 -104536732 + (TGGA)n Simple_repeat Simple_repeat 3 34 0 7 1005 2007 199 27 12 chr3 55063425 55063838 -104535945 - MTD LTR MaLR 0 419 1 7 1005 264 289 11 32 chr3 55065376 55065469 -104534314 + MER44D DNA MER2_type 1 91 -614 7 1005 818 245 19 19 chr3 55065648 55065864 -104533919 + B3 SINE B2 1 216 0 7 1005 342 0 0 0 chr3 55067094 55067132 -104532651 + (TC)n Simple_repeat Simple_repeat 2 39 0 7 1005 249 292 30 30 chr3 55067446 55067545 -104532238 + MTEa LTR MaLR 278 376 -3 7 1005 1496 186 83 50 chr3 55067552 55067754 -104532029 - ORR1D1 LTR MaLR 0 374 157 7 1005 901 100 17 12 chr3 55067754 55067926 -104531857 + (TAGA)n Simple_repeat Simple_repeat 4 176 0 8 1005 1496 186 83 50 chr3 55067926 55068085 -104531698 - ORR1D1 LTR MaLR -218 156 1 7 1005 1169 249 133 11 chr3 55068402 55068764 -104531019 - MTD LTR MaLR 0 419 14 8 1005 1756 134 0 11 chr3 55068968 55069254 -104530529 - ORR1A3 LTR MaLR 0 326 44 8 1005 2164 129 45 17 chr3 55069799 55070154 -104529629 - ORR1B2 LTR MaLR 0 367 3 8 1005 799 205 149 0 chr3 55073271 55073466 -104526317 + URR1B DNA MER1_type 2 225 0 8 1005 3038 177 166 20 chr3 55073558 55074209 -104525574 - Lx6 LINE L1 -3 7457 6712 8 1005 866 230 70 75 chr3 55074561 55074933 -104524850 - ORR1D2 LTR MaLR 0 370 1 8 1005 486 42 0 89 chr3 55076064 55076143 -104523640 + B1_Mus2 SINE Alu 64 135 -12 8 1005 679 52 21 0 chr3 55076143 55076239 -104523544 + (GAAA)n Simple_repeat Simple_repeat 3 100 0 8 1005 1571 218 28 46 chr3 55076845 55077234 -104522549 - MTD LTR MaLR -20 399 18 8 1005 205 182 0 0 chr3 55078299 55078343 -104521440 + A-rich Low_complexity Low_complexity 5 48 0 9 1005 516 101 0 0 chr3 55078412 55078501 -104521282 + (TG)n Simple_repeat Simple_repeat 2 90 0 9 1005 786 271 25 56 chr3 55078540 55078825 -104520958 - B4A SINE B4 -14 278 3 9 1005 663 237 24 132 chr3 55079793 55080089 -104519694 - B4A SINE B4 0 292 29 9 1005 380 276 71 0 chr3 55080510 55080637 -104519146 + B3 SINE B2 70 205 -11 9 1005 544 271 0 0 chr3 55080901 55081023 -104518760 + RSINE1 SINE B4 3 124 -41 9 1005 3219 50 5 8 chr3 55081341 55081742 -104518041 + MTB LTR MaLR 1 400 0 9 1005 241 236 65 65 chr3 55082969 55083046 -104516737 - MTE2a LTR MaLR -13 366 290 9 1005 226 240 0 39 chr3 55084179 55084231 -104515552 + polypyrimidine Low_complexity Low_complexity 1 50 0 9 1005 250 368 19 0 chr3 55084237 55084343 -104515440 - PB1D10 SINE Alu 0 117 10 9 1005 331 127 0 0 chr3 55085199 55085254 -104514529 + HAL1-3A_ME LINE L1 1964 2018 -840 1 1005 451 250 0 12 chr3 55085257 55085764 -104514019 + (CA)n Simple_repeat Simple_repeat 1 500 0 1 1005 1010 140 0 0 chr3 55086321 55086471 -104513312 - B1_Mur4 SINE Alu 0 150 1 1 1005 1005 88 81 0 chr3 55087563 55087699 -104512084 - B1_Mus1 SINE Alu 0 148 2 1 1005 1148 184 29 0 chr3 55089718 55089924 -104509859 - B3 SINE B2 -2 214 3 1 1005 419 309 28 42 chr3 55090297 55090513 -104509270 - L2 LINE L2 -933 2486 2274 1 1005 891 235 50 5 chr3 55090548 55090749 -104509034 + B3 SINE B2 5 214 -2 1 1005 843 155 28 14 chr3 55091437 55091581 -104508202 - B1_Mur1 SINE Alu -2 147 2 1 1005 325 324 77 22 chr3 55091689 55091872 -104507911 + MIRb SINE MIR 17 209 -59 1 1005 824 191 7 33 chr3 55092271 55092423 -104507360 + B1_Mur1 SINE Alu 1 148 -1 1 1005 968 290 126 16 chr3 55093312 55093677 -104506106 + MTD LTR MaLR 1 405 -14 1 1005 1931 159 61 50 chr3 55093729 55093941 -104505842 - ORR1C2 LTR MaLR -3 381 172 1 1005 204 40 0 0 chr3 55093941 55093966 -104505817 + (CA)n Simple_repeat Simple_repeat 2 26 0 1 1005 803 93 7 0 chr3 55093966 55094105 -104505678 + (GA)n Simple_repeat Simple_repeat 2 142 0 1 1005 1931 159 61 50 chr3 55094105 55094268 -104505515 - ORR1C2 LTR MaLR -213 171 2 1 1005 749 175 105 55 chr3 55095652 55095852 -104503931 + B3 SINE B2 1 210 -6 1 1005 201 74 0 0 chr3 55095881 55095908 -104503875 + (CAA)n Simple_repeat Simple_repeat 2 28 0 1 1005 24 0 0 0 chr3 55096238 55096262 -104503521 + AT_rich Low_complexity Low_complexity 1 24 0 1 1005 360 0 0 0 chr3 55096304 55096344 -104503439 + (TG)n Simple_repeat Simple_repeat 2 41 0 1 1005 447 234 107 19 chr3 55096444 55096579 -104503204 - B1F1 SINE Alu -1 148 6 1 1005 192 125 0 0 chr3 55097527 55097559 -104502224 + (CTG)n Simple_repeat Simple_repeat 1 32 0 1 1005 1254 255 41 28 chr3 55098073 55098436 -104501347 - ORR1D2 LTR MaLR -2 368 1 1 1005 706 333 65 7 chr3 55099870 55100163 -104499620 + Lx8 LINE L1 6814 7123 -350 1 1005 232 230 21 65 chr3 55100200 55100293 -104499490 + Lx8 LINE L1 7385 7473 0 1 1005 26 0 0 0 chr3 55102130 55102156 -104497627 + AT_rich Low_complexity Low_complexity 1 26 0 1 1005 574 72 21 0 chr3 55102172 55102269 -104497514 + (TC)n Simple_repeat Simple_repeat 2 100 0 1 1005 758 242 18 0 chr3 55102292 55102457 -104497326 - B3 SINE B2 -48 168 1 1 1005 238 186 11 44 chr3 55102588 55102678 -104497105 + (CA)n Simple_repeat Simple_repeat 1 87 0 1 1005 270 81 0 0 chr3 55103402 55103439 -104496344 + (ATTG)n Simple_repeat Simple_repeat 2 38 0 1 1005 1086 151 29 34 chr3 55104871 55105077 -104494706 - ORR1C2 LTR MaLR -5 379 175 1 1005 236 28 56 0 chr3 55105121 55105157 -104494626 + (CAGA)n Simple_repeat Simple_repeat 2 39 0 1 1005 1199 97 0 11 chr3 55105186 55105374 -104494409 - ORR1C2 LTR MaLR -196 188 3 1 1005 430 349 45 77 chr3 55105703 55106079 -104493704 - LTR40b LTR ERVL -18 444 81 1 1005 12753 56 0 0 chr3 55106100 55107661 -104492122 + L1Md_F2 LINE L1 4026 5586 -297 1 1005 7987 50 12 2 chr3 55107661 55108647 -104491136 + L1Md_F2 LINE L1 5587 6582 0 1 1005 475 132 22 0 chr3 55109000 55109091 -104490692 + (TATG)n Simple_repeat Simple_repeat 1 93 0 1 1005 183 80 0 0 chr3 55109144 55109169 -104490614 + (TCCTG)n Simple_repeat Simple_repeat 4 28 0 1 1005 880 58 0 0 chr3 55109238 55109342 -104490441 + U6 snRNA snRNA 1 104 -3 1 1005 222 62 0 0 chr3 55109361 55109393 -104490390 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 1 1005 294 59 98 0 chr3 55110138 55110241 -104489542 - L1_Mus1 LINE L1 0 6567 6512 1 1005 1602 28 0 0 chr3 55110238 55110418 -104489365 - L1_Mus1 LINE L1 -228 6339 6160 1 1005 695 226 77 6 chr3 55110461 55110643 -104489140 - B3 SINE B2 -19 197 3 1 1005 458 84 0 27 chr3 55112142 55112215 -104487568 + (TTTC)n Simple_repeat Simple_repeat 2 72 0 1 1005 811 35 267 0 chr3 55112215 55112331 -104487452 - B1_Mus2 SINE Alu 0 147 1 1 1005 1386 74 28 0 chr3 55113253 55113429 -104486354 + B2_Mm2 SINE B2 1 181 -14 1 1005 208 158 0 34 chr3 55113722 55113781 -104486002 + CT-rich Low_complexity Low_complexity 4 60 0 1 1005 307 238 98 15 chr3 55113781 55113913 -104485870 - Lx6 LINE L1 0 7460 7318 1 1005 21 0 0 0 chr3 55114820 55114841 -104484942 + AT_rich Low_complexity Low_complexity 1 21 0 1 1005 888 228 19 37 chr3 55115137 55115351 -104484432 - B3 SINE B2 -5 211 2 1 1005 386 290 123 6 chr3 55115371 55115534 -104484249 - L1MA8 LINE L1 -152 6139 5958 1 1005 399 257 30 0 chr3 55115541 55115642 -104484141 - PB1D9 SINE Alu 0 120 17 1 1005 1925 302 78 64 chr3 55116329 55117665 -104482118 + L1MC3 LINE L1 6288 7641 -144 1 1005 304 191 0 0 chr3 55117663 55117726 -104482057 - L1M3 LINE L1 -1098 5042 4980 1 1005 819 276 91 18 chr3 55117746 55118146 -104481637 + L1MA8 LINE L1 5182 5642 -649 1 1005 444 37 0 0 chr3 55118146 55118200 -104481583 + (CA)n Simple_repeat Simple_repeat 1 54 0 1 1005 819 279 79 25 chr3 55118200 55118560 -104481223 + L1MA8 LINE L1 5643 6022 -269 1 1005 628 284 56 10 chr3 55118564 55118760 -104481023 + MTD LTR MaLR 1 205 -214 1 1005 385 259 0 90 chr3 55118779 55118923 -104480860 + L1MA8 LINE L1 6160 6290 -10 1 1005 468 302 139 27 chr3 55120558 55120745 -104479038 + B3A SINE B2 1 208 -8 1 1005 877 231 136 0 chr3 55122586 55122828 -104476955 + Lx2B LINE L1 6709 6983 -17 1 1005 273 57 0 0 chr3 55122833 55122868 -104476915 + (GGA)n Simple_repeat Simple_repeat 3 37 0 1 1005 242 29 0 28 chr3 55123598 55123634 -104476149 + (TG)n Simple_repeat Simple_repeat 1 35 0 1 1005 319 247 25 25 chr3 55124114 55124193 -104475590 - ID4 SINE ID 0 83 5 1 1005 416 311 7 15 chr3 55124221 55124358 -104475425 + B3 SINE B2 1 136 -80 1 1005 1009 94 69 0 chr3 55124333 55124493 -104475290 + B2_Mm2 SINE B2 25 195 0 1 1005 396 0 0 0 chr3 55124501 55124545 -104475238 + (GA)n Simple_repeat Simple_repeat 2 45 0 1 1005 555 307 11 32 chr3 55126169 55126354 -104473429 + B3A SINE B2 1 181 -17 1 1005 222 37 0 0 chr3 55126355 55126382 -104473401 + (CA)n Simple_repeat Simple_repeat 1 27 0 1 1005 21 36 0 0 chr3 55126455 55126483 -104473300 + AT_rich Low_complexity Low_complexity 1 28 0 1 1005 1708 203 55 50 chr3 55127383 55127787 -104471996 - MTD LTR MaLR -8 411 6 1 1005 252 0 0 0 chr3 55128282 55128310 -104471473 + (T)n Simple_repeat Simple_repeat 1 28 0 1 1005 525 228 78 0 chr3 55128474 55128635 -104471148 - L1M4c LINE L1 -3888 3120 2949 1 1005 4829 60 35 6 chr3 55128671 55129297 -104470486 - L1_Mus3 LINE L1 0 6638 5995 1 1005 965 242 24 9 chr3 55129333 55129546 -104470237 - B3 SINE B2 0 216 1 1 1005 201 74 0 0 chr3 55129828 55129855 -104469928 + (TCTA)n Simple_repeat Simple_repeat 2 28 0 1 1005 310 265 99 35 chr3 55130200 55130469 -104469314 - L1M4c LINE L1 -5238 2096 1826 1 1005 23 0 0 0 chr3 55131844 55131867 -104467916 + AT_rich Low_complexity Low_complexity 1 23 0 1 1005 441 0 0 0 chr3 55132282 55132331 -104467452 + (TA)n Simple_repeat Simple_repeat 1 49 0 1 1005 454 253 17 17 chr3 55132419 55132596 -104467187 + (TGGG)n Simple_repeat Simple_repeat 1 177 0 1 1005 476 309 19 19 chr3 55132601 55132756 -104467027 - B3A SINE B2 -16 182 28 1 1005 247 338 0 0 chr3 55132810 55132887 -104466896 - RSINE1 SINE B4 -87 78 2 1 1005 456 230 13 13 chr3 55133146 55133380 -104466403 + CT-rich Low_complexity Low_complexity 1 234 0 1 1005 395 292 8 55 chr3 55133423 55133550 -104466233 - B3A SINE B2 -69 129 9 1 1005 519 288 0 0 chr3 55135360 55135485 -104464298 + B3A SINE B2 1 125 -73 1 1005 793 196 143 11 chr3 55135734 55135754 -104464029 - B3 SINE B2 -14 202 184 1 1005 192 77 0 0 chr3 55135754 55135780 -104464003 + (TATG)n Simple_repeat Simple_repeat 1 26 0 1 1005 793 196 143 11 chr3 55135780 55135934 -104463849 - B3 SINE B2 -33 183 5 1 1005 182 37 37 0 chr3 55136803 55136830 -104462953 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 1 1005 1326 68 0 0 chr3 55136976 55137191 -104462592 + (GAAA)n Simple_repeat Simple_repeat 1 215 0 1 1005 256 234 242 65 chr3 55138642 55138857 -104460926 + RLTR24 LTR ERV1 277 529 0 1 1005 554 332 60 31 chr3 55142167 55142518 -104457265 - MLT2D LTR ERVL -9 405 45 1 1005 776 193 122 25 chr3 55142793 55142990 -104456793 + B3 SINE B2 1 216 0 1 1005 243 0 0 0 chr3 55144902 55144929 -104454854 + (CA)n Simple_repeat Simple_repeat 2 28 0 1 1005 267 152 0 0 chr3 55144929 55144975 -104454808 + (TA)n Simple_repeat Simple_repeat 1 46 0 1 1005 861 225 35 10 chr3 55144975 55145177 -104454606 - B3 SINE B2 -8 208 2 1 1005 846 235 33 0 chr3 55147290 55147473 -104452310 - B3 SINE B2 -27 189 1 1 1005 1249 28 7 0 chr3 55147597 55147742 -104452041 + B1_Mus2 SINE Alu 2 147 0 1 1005 414 114 0 0 chr3 55147857 55147936 -104451847 + (A)n Simple_repeat Simple_repeat 1 79 0 1 1005 1707 39 14 0 chr3 55148014 55148222 -104451561 + L1Md_T LINE L1 6372 6582 0 1 1005 4473 158 115 6 chr3 55148335 55149154 -104450629 - RMER13B LTR ERVK 0 908 1 1 1005 448 310 156 28 chr3 55149541 55149823 -104449960 + MER2 DNA MER2_type 1 318 -27 1 1005 231 114 0 0 chr3 55150306 55150341 -104449442 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 1 1005 510 211 0 0 chr3 55150784 55150959 -104448824 + (TG)n Simple_repeat Simple_repeat 1 175 0 1 1005 309 198 0 0 chr3 55150979 55151070 -104448713 + (TG)n Simple_repeat Simple_repeat 2 92 0 1 1005 876 233 9 41 chr3 55152486 55152705 -104447078 - B3 SINE B2 -4 212 1 1 1005 332 222 79 159 chr3 55154478 55154692 -104445091 - ID_B1 SINE B4 -20 204 8 1 1005 634 209 70 65 chr3 55154790 55155020 -104444763 - Lx9 LINE L1 0 7644 7414 1 1005 520 50 25 0 chr3 55155942 55156022 -104443761 + (TG)n Simple_repeat Simple_repeat 2 83 0 1 1005 344 310 26 0 chr3 55157012 55157125 -104442658 + B3 SINE B2 101 216 0 1 1005 603 298 85 34 chr3 55157144 55157439 -104442344 + L1MC1 LINE L1 6016 6325 -8 2 1005 509 251 162 16 chr3 55157464 55157776 -104442007 + L1MB3 LINE L1 5814 6181 -2 2 1005 324 0 0 0 chr3 55158806 55158842 -104440941 + (TG)n Simple_repeat Simple_repeat 2 37 0 2 1005 1876 77 156 17 chr3 55159063 55159352 -104440431 - ORR1A4 LTR MaLR 0 329 1 2 1005 1182 82 0 0 chr3 55161772 55161918 -104437865 - B1_Mus1 SINE Alu 0 148 3 2 1005 398 306 85 77 chr3 55162213 55162472 -104437311 - MLT1A0 LTR MaLR -102 263 3 2 1005 551 188 120 43 chr3 55163202 55163386 -104436397 - MTC-int LTR MaLR -1016 242 45 2 1005 1777 169 123 13 chr3 55163401 55163774 -104436009 - MTD LTR MaLR -5 414 1 2 1005 519 17 0 0 chr3 55164144 55164204 -104435579 + (TG)n Simple_repeat Simple_repeat 1 60 0 2 1005 1053 234 0 0 chr3 55164216 55164421 -104435362 + B3 SINE B2 1 205 -11 2 1005 21 36 0 0 chr3 55164429 55164457 -104435326 + AT_rich Low_complexity Low_complexity 1 28 0 2 1005 437 0 19 0 chr3 55165782 55165835 -104433948 + (TG)n Simple_repeat Simple_repeat 1 54 0 2 1005 592 239 128 6 chr3 55165839 55165995 -104433788 - B3A SINE B2 -23 175 1 2 1005 496 324 49 48 chr3 55166424 55166768 -104433015 - MLT1C LTR MaLR -2 465 75 2 1005 216 0 0 0 chr3 55167498 55167522 -104432261 + (A)n Simple_repeat Simple_repeat 1 24 0 2 1005 2409 89 85 16 chr3 55167734 55168100 -104431683 + ORR1B1 LTR MaLR 4 394 0 2 1005 217 268 0 18 chr3 55168946 55169003 -104430780 + (CATATA)n Simple_repeat Simple_repeat 3 58 0 2 1005 198 167 0 0 chr3 55169029 55169065 -104430718 + (CA)n Simple_repeat Simple_repeat 1 36 0 2 1005 516 322 34 0 chr3 55169351 55169500 -104430283 + RSINE1 SINE B4 6 159 -6 2 1005 252 0 0 0 chr3 55169505 55169533 -104430250 + (CA)n Simple_repeat Simple_repeat 2 29 0 2 1005 330 98 0 0 chr3 55169533 55169584 -104430199 + (CGGG)n Simple_repeat Simple_repeat 2 52 0 2 1005 237 98 0 0 chr3 55169634 55169675 -104430108 + (TG)n Simple_repeat Simple_repeat 2 42 0 2 1005 1177 55 0 7 chr3 55169678 55169824 -104429959 - B1_Mus2 SINE Alu -1 146 2 2 1005 939 266 36 21 chr3 55170208 55170489 -104429294 - B4 SINE B4 -2 290 6 2 1005 708 205 0 0 chr3 55170818 55171082 -104428701 + (TA)n Simple_repeat Simple_repeat 1 264 0 2 1005 21 0 0 0 chr3 55171104 55171125 -104428658 + AT_rich Low_complexity Low_complexity 1 21 0 2 1005 328 346 6 16 chr3 55171328 55171510 -104428273 + (TGG)n Simple_repeat Simple_repeat 1 180 0 2 1005 250 259 8 8 chr3 55171561 55171678 -104428105 + (TGG)n Simple_repeat Simple_repeat 3 119 0 2 1005 340 268 7 7 chr3 55171714 55171868 -104427915 + (TGG)n Simple_repeat Simple_repeat 3 156 0 2 1005 455 259 0 17 chr3 55171923 55172100 -104427683 + (ATGGTG)n Simple_repeat Simple_repeat 2 175 0 2 1005 192 77 0 0 chr3 55172138 55172164 -104427619 + (ATGGTG)n Simple_repeat Simple_repeat 1 26 0 2 1005 402 232 20 66 chr3 55172557 55172709 -104427074 + B1F1 SINE Alu 5 149 0 2 1005 236 271 89 68 chr3 55172826 55172930 -104426853 + PB1D10 SINE Alu 11 116 -33 2 1005 789 62 0 0 chr3 55172941 55173053 -104426730 + (CA)n Simple_repeat Simple_repeat 2 113 0 2 1005 402 21 0 0 chr3 55173055 55173102 -104426681 + (TATG)n Simple_repeat Simple_repeat 2 48 0 2 1005 1394 156 65 29 chr3 55173767 55174045 -104425738 - ORR1B1 LTR MaLR -81 313 26 2 1005 316 277 167 21 chr3 55174446 55174590 -104425193 + RSINE1 SINE B4 1 165 0 2 1005 659 303 61 12 chr3 55174798 55175045 -104424738 + MLT1A0 LTR MaLR 105 363 -2 2 1005 565 290 32 98 chr3 55175083 55175461 -104424322 - MER47A DNA MER2_type -10 356 4 2 1005 345 276 109 38 chr3 55175704 55175971 -104423812 + B4 SINE B4 7 292 0 2 1005 681 91 51 28 chr3 55175981 55176418 -104423365 + (CA)n Simple_repeat Simple_repeat 1 447 0 2 1005 382 127 75 12 chr3 55176440 55176600 -104423183 + (CA)n Simple_repeat Simple_repeat 1 170 0 2 1005 336 285 220 35 chr3 55176601 55176801 -104422982 - B4A SINE B4 -54 238 2 2 1005 341 238 14 5 chr3 55177284 55177375 -104422408 + B3A SINE B2 19 115 -83 2 1005 401 62 31 0 chr3 55177547 55177611 -104422172 + (TTTTA)n Simple_repeat Simple_repeat 3 68 0 2 1005 715 168 44 0 chr3 55178617 55178754 -104421029 + MTC LTR MaLR 47 189 -232 2 1005 227 224 20 0 chr3 55178750 55178799 -104420984 + MTD LTR MaLR 136 185 -234 2 1005 1300 185 64 18 chr3 55178787 55179068 -104420715 + MTC LTR MaLR 128 421 0 2 1005 252 0 0 0 chr3 55179239 55179267 -104420516 + (CA)n Simple_repeat Simple_repeat 1 28 0 2 1005 1240 225 110 32 chr3 55179370 55179742 -104420041 - MTD LTR MaLR -14 405 5 2 1005 293 160 122 48 chr3 55180358 55180444 -104419339 + PB1 SINE Alu 41 129 -20 2 1005 312 70 0 0 chr3 55180925 55180968 -104418815 + (TA)n Simple_repeat Simple_repeat 1 43 0 2 1006 227 352 54 11 chr3 55182627 55182719 -104417064 - L3b LINE CR1 -10 472 377 2 1006 675 259 36 26 chr3 55183163 55183357 -104416426 + MTD LTR MaLR 87 282 -137 2 1006 333 0 0 0 chr3 55183357 55183394 -104416389 + (CCTTG)n Simple_repeat Simple_repeat 1 37 0 2 1006 288 0 0 0 chr3 55183563 55183595 -104416188 + (A)n Simple_repeat Simple_repeat 1 32 0 2 1006 284 290 18 45 chr3 55183701 55183813 -104415970 - PB1D7 SINE Alu 0 120 12 2 1006 404 280 0 0 chr3 55183867 55183967 -104415816 + PB1D10 SINE Alu 8 107 -10 2 1006 327 49 0 0 chr3 55183970 55184011 -104415772 + (CAAA)n Simple_repeat Simple_repeat 3 43 0 2 1006 268 338 14 0 chr3 55184011 55184085 -104415698 + ID4 SINE ID 1 75 -8 2 1006 22 56 0 0 chr3 55185095 55185131 -104414652 + AT_rich Low_complexity Low_complexity 1 36 0 2 1006 729 183 0 0 chr3 55185888 55186041 -104413742 + (TA)n Simple_repeat Simple_repeat 1 153 0 2 1006 636 321 5 9 chr3 55186916 55187133 -104412650 + B3 SINE B2 1 216 0 2 1006 1001 198 20 0 chr3 55188620 55188817 -104410966 - B3 SINE B2 -14 202 2 2 1006 412 214 8 176 chr3 55188824 55188949 -104410834 - B1F SINE Alu -8 141 21 2 1006 200 182 0 0 chr3 55188985 55189018 -104410765 + (TG)n Simple_repeat Simple_repeat 2 34 0 2 1006 414 0 0 0 chr3 55189784 55189830 -104409953 + (TG)n Simple_repeat Simple_repeat 2 47 0 2 1006 261 192 0 64 chr3 55190569 55190647 -104409136 + T-rich Low_complexity Low_complexity 2 74 0 2 1006 29 60 0 0 chr3 55190731 55190781 -104409002 + AT_rich Low_complexity Low_complexity 1 50 0 2 1006 261 22 65 0 chr3 55192432 55192478 -104407305 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 2 1006 692 235 20 0 chr3 55192903 55192932 -104406851 - B3A SINE B2 -2 196 166 2 1006 459 0 0 0 chr3 55192932 55192983 -104406800 + (GA)n Simple_repeat Simple_repeat 1 51 0 2 1006 692 235 20 0 chr3 55192983 55193102 -104406681 - B3A SINE B2 -33 165 46 2 1006 451 302 32 0 chr3 55193636 55193762 -104406021 - MIRb SINE MIR -91 177 48 2 1006 369 0 0 0 chr3 55194714 55194755 -104405028 + (TG)n Simple_repeat Simple_repeat 2 42 0 2 1006 342 0 0 0 chr3 55194760 55194798 -104404985 + (GA)n Simple_repeat Simple_repeat 1 38 0 2 1006 568 184 37 0 chr3 55195398 55195507 -104404276 - PB1D9 SINE Alu 0 120 8 2 1006 201 39 0 0 chr3 55195512 55195538 -104404245 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 2 1006 514 315 59 16 chr3 55196203 55196458 -104403325 - MER57E1 LTR ERV1 -2 370 105 2 1006 890 222 75 5 chr3 55196670 55196869 -104402914 + B3 SINE B2 4 216 0 2 1006 383 252 234 37 chr3 55196895 55197109 -104402674 + L1_Rod LINE L1 4920 5175 -672 2 1006 761 203 79 6 chr3 55197753 55197931 -104401852 + B3 SINE B2 16 206 -10 2 1006 431 308 173 56 chr3 55198756 55199200 -104400583 - MER21B LTR ERV1 -156 707 212 2 1006 1547 144 60 98 chr3 55199225 55199593 -104400190 + ORR1B1 LTR MaLR 41 394 0 2 1006 353 254 0 0 chr3 55199886 55199967 -104399816 + PB1D9 SINE Alu 9 89 -60 2 1006 417 335 152 7 chr3 55200981 55201276 -104398507 + MER2 DNA MER2_type 8 345 0 2 1006 2479 124 84 2 chr3 55202550 55202955 -104396828 - RLTR25A LTR ERVK -665 438 1 2 1006 714 197 26 26 chr3 55202998 55203149 -104396634 - B3 SINE B2 -1 215 65 2 1006 1003 251 142 24 chr3 55203260 55203591 -104396192 - MTE2a LTR MaLR -8 371 2 2 1006 467 333 29 0 chr3 55203591 55203727 -104396056 - B4A SINE B4 -57 235 96 2 1006 2011 128 0 56 chr3 55203727 55204065 -104395718 - ORR1A2 LTR MaLR -8 319 1 2 1006 415 267 0 19 chr3 55204069 55204172 -104395611 - B4 SINE B4 -191 101 1 2 1006 714 86 0 0 chr3 55204179 55204295 -104395488 + (TC)n Simple_repeat Simple_repeat 2 117 0 2 1006 1315 183 0 4 chr3 55207589 55207814 -104391969 - URR1B DNA MER1_type 0 225 2 2 1006 270 0 0 0 chr3 55208097 55208127 -104391656 + (A)n Simple_repeat Simple_repeat 1 30 0 2 1006 180 125 0 0 chr3 55208443 55208475 -104391308 + (TG)n Simple_repeat Simple_repeat 1 32 0 2 1006 409 304 128 73 chr3 55208485 55208602 -104391181 - L1MA4A LINE L1 -385 5918 5796 2 1006 317 24 24 0 chr3 55208602 55208644 -104391139 + (TG)n Simple_repeat Simple_repeat 2 44 0 2 1006 409 304 128 73 chr3 55208644 55208934 -104390849 - L1MA4A LINE L1 -508 5795 5491 2 1006 1343 115 0 5 chr3 55208960 55209153 -104390630 + B2_Mm1a SINE B2 2 193 0 2 1006 671 292 38 35 chr3 55209337 55209709 -104390074 - L1MA4A LINE L1 -2604 3539 3167 2 1006 302 240 53 13 chr3 55209715 55209791 -104389992 - ID4_ SINE ID -3 80 2 2 1006 333 0 0 0 chr3 55210434 55210471 -104389312 + (CA)n Simple_repeat Simple_repeat 2 38 0 2 1006 5165 114 99 15 chr3 55210575 55211455 -104388328 - RMER17B LTR ERVK -4 954 1 2 1006 2403 120 164 0 chr3 55212219 55212676 -104387107 - RLTR47_MM LTR ERV1 0 532 1 2 1006 286 364 67 57 chr3 55212743 55213043 -104386740 - L2b LINE L2 -5 3370 3068 2 1006 1407 214 90 0 chr3 55214041 55214364 -104385419 - MTD LTR MaLR -67 352 1 2 1006 2176 103 54 6 chr3 55214530 55214843 -104384940 + ORR1A4 LTR MaLR 2 329 0 2 1006 665 285 39 0 chr3 55215579 55215758 -104384025 - B3 SINE B2 -30 186 1 3 1006 1609 133 43 140 chr3 55216033 55216425 -104383358 - ORR1B1 LTR MaLR 0 394 41 3 1006 255 370 0 0 chr3 55216776 55216884 -104382899 - PB1D10 SINE Alu 0 117 10 3 1006 474 12 0 86 chr3 55217848 55217941 -104381842 + (CTA)n Simple_repeat Simple_repeat 1 85 0 3 1006 1089 219 137 33 chr3 55218031 55218052 -104381731 + MTD LTR MaLR 6 24 -395 3 1006 270 0 0 0 chr3 55218052 55218082 -104381701 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 3 1006 1089 219 137 33 chr3 55218082 55218395 -104381388 + MTD LTR MaLR 25 374 -45 3 1006 387 0 0 0 chr3 55218426 55218469 -104381314 + (GA)n Simple_repeat Simple_repeat 2 44 0 3 1006 528 153 0 0 chr3 55218477 55218562 -104381221 - ORR1C2 LTR MaLR -214 170 86 3 1006 626 290 68 68 chr3 55220566 55220873 -104378910 + MER44B DNA MER2_type 243 549 -1 3 1006 966 206 58 14 chr3 55221445 55221652 -104378131 + B3 SINE B2 1 216 0 3 1006 23 0 0 0 chr3 55222096 55222119 -104377664 + AT_rich Low_complexity Low_complexity 1 23 0 3 1006 1289 263 148 31 chr3 55222591 55223174 -104376609 + Lx8 LINE L1 6823 7473 0 3 1006 291 114 0 0 chr3 55223180 55223224 -104376559 + (TTA)n Simple_repeat Simple_repeat 1 44 0 3 1006 216 0 0 0 chr3 55224026 55224050 -104375733 + (TG)n Simple_repeat Simple_repeat 1 24 0 3 1006 503 101 0 12 chr3 55224096 55224176 -104375607 + (TA)n Simple_repeat Simple_repeat 1 79 0 3 1006 219 183 18 55 chr3 55224249 55224359 -104375424 + (TATG)n Simple_repeat Simple_repeat 1 106 0 3 1006 524 56 14 0 chr3 55224976 55225048 -104374735 + (CA)n Simple_repeat Simple_repeat 1 73 0 3 1006 578 243 82 16 chr3 55225683 55225867 -104373916 - B3 SINE B2 -19 197 2 3 1006 1132 157 13 52 chr3 55225882 55226111 -104373672 + URR1A DNA MER1_type 7 226 0 3 1006 245 283 84 50 chr3 55226984 55227103 -104372680 + MER20 DNA MER1_type 97 219 0 3 1006 21 0 0 0 chr3 55227420 55227441 -104372342 + AT_rich Low_complexity Low_complexity 1 21 0 3 1006 568 259 102 20 chr3 55227777 55227974 -104371809 + B3 SINE B2 1 213 -3 3 1006 25 0 0 0 chr3 55228332 55228357 -104371426 + AT_rich Low_complexity Low_complexity 1 25 0 3 1006 825 261 26 30 chr3 55228562 55228795 -104370988 + B4A SINE B4 1 232 -60 3 1006 234 0 0 0 chr3 55228835 55228861 -104370922 + (TC)n Simple_repeat Simple_repeat 2 27 0 3 1006 210 37 0 0 chr3 55228861 55228887 -104370896 + (TG)n Simple_repeat Simple_repeat 2 28 0 3 1006 502 312 42 21 chr3 55229007 55229200 -104370583 + B3A SINE B2 1 197 -1 3 1006 245 248 145 20 chr3 55229250 55229402 -104370381 - L1MA5 LINE L1 0 6300 6130 3 1006 1125 209 24 0 chr3 55232432 55232643 -104367140 + B3 SINE B2 1 216 0 3 1006 588 65 0 0 chr3 55233103 55233180 -104366603 + (GGGA)n Simple_repeat Simple_repeat 4 80 0 3 1006 189 288 215 25 chr3 55233455 55233576 -104366207 + MIRb SINE MIR 86 229 -39 3 1006 180 0 0 0 chr3 55233668 55233688 -104366095 + (TTTTG)n Simple_repeat Simple_repeat 3 22 0 3 1006 315 0 0 0 chr3 55233806 55233841 -104365942 + (CA)n Simple_repeat Simple_repeat 1 35 0 3 1006 1974 122 0 154 chr3 55233932 55234321 -104365462 - ORR1A4 LTR MaLR 0 329 1 3 1006 351 113 0 0 chr3 55235870 55235923 -104363860 + (CAGA)n Simple_repeat Simple_repeat 1 53 0 3 1006 26 0 0 0 chr3 55236890 55236916 -104362867 + AT_rich Low_complexity Low_complexity 1 26 0 3 1006 297 118 0 0 chr3 55239310 55239361 -104360422 + (TG)n Simple_repeat Simple_repeat 1 51 0 3 1006 547 263 37 31 chr3 55239364 55239385 -104360398 - RSINE1 SINE B4 -1 164 144 3 1006 1061 94 0 16 chr3 55239385 55239568 -104360215 + (TG)n Simple_repeat Simple_repeat 1 180 0 3 1006 547 263 37 31 chr3 55239568 55239707 -104360076 - RSINE1 SINE B4 -22 143 3 3 1006 237 146 0 0 chr3 55240145 55240193 -104359590 + (TCTCTG)n Simple_repeat Simple_repeat 1 48 0 3 1006 180 200 0 0 chr3 55240191 55240236 -104359547 + (TG)n Simple_repeat Simple_repeat 2 46 0 3 1006 529 241 6 82 chr3 55240755 55240913 -104358870 + B3A SINE B2 51 196 -2 3 1006 1203 267 82 66 chr3 55244342 55244888 -104354895 - MER89 LTR ERV1 -1 558 4 3 1006 312 304 94 17 chr3 55245843 55245960 -104353823 + MER20 DNA MER1_type 2 127 -92 3 1006 1600 214 96 25 chr3 55248614 55249096 -104350687 - RMER4B LTR ERVK -9 457 17 3 1006 223 304 0 0 chr3 55249104 55249160 -104350623 + ID4 SINE ID 24 79 -4 3 1006 1327 222 90 3 chr3 55249600 55249921 -104349862 - ORR1D2 LTR MaLR -3 367 19 3 1006 372 276 147 5 chr3 55249938 55250142 -104349641 + MER2 DNA MER2_type 113 345 0 3 1006 25 0 0 0 chr3 55250582 55250607 -104349176 + AT_rich Low_complexity Low_complexity 1 25 0 3 1006 22 0 0 0 chr3 55251707 55251729 -104348054 + AT_rich Low_complexity Low_complexity 1 22 0 3 1006 690 13 0 0 chr3 55251806 55251885 -104347898 + (GA)n Simple_repeat Simple_repeat 1 79 0 3 1006 252 239 75 0 chr3 55251918 55251985 -104347798 + L2a LINE L2 3338 3409 -17 3 1006 261 0 0 0 chr3 55252589 55252618 -104347165 + (TC)n Simple_repeat Simple_repeat 2 30 0 3 1006 285 29 0 0 chr3 55252618 55252651 -104347132 + (TG)n Simple_repeat Simple_repeat 1 34 0 3 1006 561 203 48 8 chr3 55253191 55253315 -104346468 + B3 SINE B2 58 186 -30 3 1006 1704 218 32 29 chr3 55253642 55254054 -104345729 - MTD LTR MaLR -5 414 2 3 1006 501 62 0 0 chr3 55256213 55256278 -104343505 + (GA)n Simple_repeat Simple_repeat 2 66 0 3 1006 510 280 58 23 chr3 55256497 55256669 -104343114 + MER5A DNA MER1_type 12 189 0 3 1006 486 312 29 23 chr3 55256977 55257151 -104342632 + B4A SINE B4 31 205 -87 3 1006 255 282 23 12 chr3 55257180 55257266 -104342517 + (CATG)n Simple_repeat Simple_repeat 2 88 0 3 1006 833 245 279 52 chr3 55257269 55257732 -104342051 - RLTR20C LTR ERVK 0 568 1 3 1006 819 325 63 3 chr3 55258170 55258488 -104341295 + MER2 DNA MER2_type 8 344 -1 3 1006 284 274 102 31 chr3 55259536 55259634 -104340149 + B1F1 SINE Alu 1 105 -44 3 1006 3133 119 8 14 chr3 55260762 55261247 -104338536 + Lx LINE L1 6173 6654 0 3 1006 41 0 0 0 chr3 55261647 55261688 -104338095 + AT_rich Low_complexity Low_complexity 1 41 0 3 1006 342 243 64 27 chr3 55261842 55261952 -104337831 + PB1D10 SINE Alu 3 116 -1 3 1006 843 39 0 0 chr3 55262153 55262256 -104337527 + (TTCC)n Simple_repeat Simple_repeat 3 105 0 3 1006 2842 294 136 25 chr3 55263083 55263981 -104335802 - Lx8 LINE L1 -1 7472 6476 3 1006 1544 248 19 13 chr3 55263981 55264353 -104335430 - ORR1D1 LTR MaLR 0 374 1 3 1006 2842 294 136 25 chr3 55264353 55264690 -104335093 - Lx8 LINE L1 -998 6475 6100 3 1006 342 45 0 0 chr3 55264940 55264984 -104334799 + (CA)n Simple_repeat Simple_repeat 2 45 0 3 1006 21 0 0 0 chr3 55265437 55265458 -104334325 + GC_rich Low_complexity Low_complexity 1 21 0 3 1006 414 0 0 0 chr3 55266636 55266682 -104333101 + (TAAA)n Simple_repeat Simple_repeat 2 47 0 3 1006 23 54 0 0 chr3 55275671 55275708 -104324075 + AT_rich Low_complexity Low_complexity 1 37 0 3 1006 722 125 22 0 chr3 55277744 55277880 -104321903 - RLTR11B LTR ERVK -107 346 208 3 1006 232 143 41 0 chr3 55277881 55277954 -104321829 + (TCTCTG)n Simple_repeat Simple_repeat 1 75 0 3 1006 1483 147 7 26 chr3 55277955 55278238 -104321545 - RLTR11B LTR ERVK -174 271 1 3 1006 372 346 138 17 chr3 55278509 55278980 -104320803 + L3 LINE CR1 3961 4488 -1 3 1006 642 65 0 0 chr3 55279548 55279640 -104320143 + (TC)n Simple_repeat Simple_repeat 1 92 0 3 1006 198 0 0 0 chr3 55279825 55279847 -104319936 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 3 1006 261 194 47 37 chr3 55286059 55286166 -104313617 + (TA)n Simple_repeat Simple_repeat 2 109 0 3 1006 414 57 0 0 chr3 55286172 55286225 -104313558 + (CA)n Simple_repeat Simple_repeat 2 54 0 3 1006 2527 174 42 40 chr3 55286338 55286860 -104312923 - RLTR11A2 LTR ERVK -2 525 3 3 1006 971 161 0 6 chr3 55286965 55287146 -104312637 + CT-rich Low_complexity Low_complexity 1 180 0 3 1006 239 175 18 0 chr3 55287149 55287206 -104312577 + T-rich Low_complexity Low_complexity 5 62 0 3 1006 449 190 0 10 chr3 55287204 55287305 -104312478 + CT-rich Low_complexity Low_complexity 2 101 0 3 1006 1519 279 111 31 chr3 55287839 55288475 -104311308 - Lx8 LINE L1 -389 7307 6636 3 1006 342 317 30 0 chr3 55290767 55290868 -104308915 + PB1D7 SINE Alu 2 105 -15 3 1006 183 42 0 0 chr3 55291179 55291203 -104308580 + (TTTTTG)n Simple_repeat Simple_repeat 2 25 0 3 1006 348 103 0 0 chr3 55293138 55293196 -104306587 + (GA)n Simple_repeat Simple_repeat 2 59 0 3 1006 996 92 0 0 chr3 55293893 55294034 -104305749 + (TTTCC)n Simple_repeat Simple_repeat 2 142 0 3 1006 668 64 11 0 chr3 55294034 55294128 -104305655 + (TTTC)n Simple_repeat Simple_repeat 1 95 0 3 1006 604 268 28 62 chr3 55294451 55294662 -104305121 - B4A SINE B4 -26 266 63 3 1006 662 277 24 43 chr3 55294847 55295058 -104304725 + ID_B1 SINE B4 13 219 -5 3 1006 808 162 7 40 chr3 55295468 55295616 -104304167 + B1_Mur2 SINE Alu 2 144 -5 3 1006 219 280 42 30 chr3 55295733 55295905 -104303878 - MIRm SINE MIR -66 202 23 3 1006 357 24 0 0 chr3 55296518 55296560 -104303223 + (TA)n Simple_repeat Simple_repeat 2 43 0 3 1006 1023 275 85 45 chr3 55297989 55298411 -104301372 + Lx8 LINE L1 7035 7473 0 3 1006 679 235 45 34 chr3 55300952 55301156 -104298627 - B3A SINE B2 -5 211 2 3 1006 207 114 0 0 chr3 55302809 55302844 -104296939 + (A)n Simple_repeat Simple_repeat 1 35 0 3 1006 180 0 0 0 chr3 55303848 55303868 -104295915 + (TG)n Simple_repeat Simple_repeat 1 20 0 3 1006 264 30 0 0 chr3 55304172 55304205 -104295578 + (TC)n Simple_repeat Simple_repeat 1 33 0 4 1006 282 203 15 15 chr3 55304607 55304672 -104295111 - B3 SINE B2 -126 90 26 4 1006 1243 242 134 26 chr3 55304761 55305223 -104294560 - Lx9 LINE L1 -36 7608 7097 4 1006 231 189 19 0 chr3 55305272 55305325 -104294458 - Lx8 LINE L1 -453 7020 6967 4 1006 226 192 39 0 chr3 55305376 55305428 -104294355 - Lx8 LINE L1 -453 7020 6967 4 1006 226 192 39 0 chr3 55305429 55305481 -104294302 - Lx8 LINE L1 -453 7020 6967 4 1006 231 189 19 0 chr3 55305482 55305535 -104294248 - Lx8 LINE L1 -453 7020 6967 4 1006 231 189 19 0 chr3 55305536 55305589 -104294194 - Lx8 LINE L1 -453 7020 6967 4 1006 226 192 39 0 chr3 55305590 55305642 -104294141 - Lx8 LINE L1 -453 7020 6967 4 1006 1910 212 103 30 chr3 55305643 55306139 -104293644 - Lx9 LINE L1 -492 7152 6621 4 1006 252 0 0 0 chr3 55307045 55307073 -104292710 + (T)n Simple_repeat Simple_repeat 1 28 0 4 1006 243 333 19 39 chr3 55307113 55307216 -104292567 + L2a LINE L2 3118 3218 -208 4 1006 249 245 0 0 chr3 55307423 55307472 -104292311 + L2a LINE L2 3297 3345 -81 4 1006 498 115 0 0 chr3 55307517 55307595 -104292188 - B2_Mm2 SINE B2 -116 79 2 4 1006 627 14 0 0 chr3 55308497 55308569 -104291214 + (TC)n Simple_repeat Simple_repeat 2 73 0 4 1006 251 267 78 0 chr3 55308777 55308867 -104290916 - B1F1 SINE Alu -51 98 2 4 1006 440 117 0 13 chr3 55308971 55309049 -104290734 + (CA)n Simple_repeat Simple_repeat 1 77 0 4 1006 783 210 160 5 chr3 55309372 55309559 -104290224 - B3 SINE B2 0 216 1 4 1006 912 57 0 119 chr3 55309615 55309696 -104290087 + B1_Mus2 SINE Alu 5 85 -62 4 1006 4109 5 0 0 chr3 55309696 55310143 -104289640 + L1Md_T LINE L1 6136 6582 0 4 1006 912 57 0 119 chr3 55310143 55310220 -104289563 + B1_Mus2 SINE Alu 86 144 -3 4 1006 285 29 0 0 chr3 55312105 55312139 -104287644 + (TTG)n Simple_repeat Simple_repeat 2 35 0 4 1007 201 74 0 0 chr3 55313737 55313764 -104286019 + (TG)n Simple_repeat Simple_repeat 2 28 0 4 1007 366 264 20 14 chr3 55316236 55316244 -104283539 + (TG)n Simple_repeat Simple_repeat 2 9 0 4 1007 858 52 0 0 chr3 55316244 55316360 -104283423 + (CAGAGA)n Simple_repeat Simple_repeat 3 118 0 4 1007 366 248 19 11 chr3 55316360 55316629 -104283154 + (TG)n Simple_repeat Simple_repeat 1 270 0 4 1007 202 325 13 0 chr3 55317529 55317606 -104282177 + MIRc SINE MIR 90 167 -101 4 1007 910 240 10 5 chr3 55318435 55318644 -104281139 + B3 SINE B2 1 210 -6 4 1007 253 362 34 17 chr3 55319995 55320113 -104279670 - L2b LINE L2 0 3375 3256 4 1007 385 218 8 53 chr3 55322699 55322813 -104276970 - B1F SINE Alu 0 150 35 4 1007 348 24 0 0 chr3 55324218 55324259 -104275524 + (GA)n Simple_repeat Simple_repeat 1 41 0 4 1007 348 83 0 0 chr3 55325206 55325254 -104274529 + (TAGA)n Simple_repeat Simple_repeat 1 48 0 4 1007 237 149 29 15 chr3 55326884 55326952 -104272831 + (TA)n Simple_repeat Simple_repeat 2 70 0 4 1007 767 231 7 0 chr3 55329437 55329584 -104270199 + B1_Mur1 SINE Alu 1 148 -1 4 1007 425 335 90 16 chr3 55329958 55330146 -104269637 + MER58A DNA MER1_type 4 205 -19 4 1007 24 0 0 0 chr3 55341251 55341275 -104258508 + AT_rich Low_complexity Low_complexity 1 24 0 4 1007 201 139 0 0 chr3 55341297 55341340 -104258443 + (TC)n Simple_repeat Simple_repeat 2 44 0 4 1007 21 0 0 0 chr3 55342489 55342510 -104257273 + AT_rich Low_complexity Low_complexity 1 21 0 4 1007 266 289 0 11 chr3 55344092 55344183 -104255600 - 7SK RNA RNA -240 91 2 4 1007 505 0 15 15 chr3 55344263 55344329 -104255454 + (TTTTA)n Simple_repeat Simple_repeat 2 67 0 4 1007 390 42 0 0 chr3 55345720 55345768 -104254015 + (TGGA)n Simple_repeat Simple_repeat 2 49 0 4 1007 276 272 24 12 chr3 55346610 55346692 -104253091 + GA-rich Low_complexity Low_complexity 1 83 0 4 1007 819 219 52 25 chr3 55348841 55349121 -104250662 + ORR1D2 LTR MaLR 1 405 -14 4 1007 243 0 0 0 chr3 55349146 55349173 -104250610 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 4 1007 680 290 79 46 chr3 55349173 55349477 -104250306 - ORR1E LTR MaLR -45 314 1 4 1007 432 0 0 0 chr3 55349615 55349663 -104250120 + (TG)n Simple_repeat Simple_repeat 1 48 0 4 1007 771 256 148 33 chr3 55349663 55349985 -104249798 - MTD LTR MaLR -16 384 8 4 1007 1297 297 41 85 chr3 55350342 55350908 -104248875 - MER89 LTR ERV1 -1 558 18 4 1007 252 286 79 33 chr3 55351061 55351213 -104248570 - L2 LINE L2 -474 2945 2787 4 1007 607 130 29 23 chr3 55351305 55351478 -104248305 + (CAGA)n Simple_repeat Simple_repeat 1 174 0 4 1007 564 138 21 42 chr3 55351525 55351766 -104248017 + (CAGAGA)n Simple_repeat Simple_repeat 1 235 0 4 1007 905 56 0 0 chr3 55352367 55352474 -104247309 + U6 snRNA snRNA 1 107 0 4 1007 4111 71 15 0 chr3 55352474 55352996 -104246787 + L1_Mus1 LINE L1 6037 6566 -1 4 1007 537 246 49 0 chr3 55353018 55353160 -104246623 + B1_Mur3 SINE Alu 1 149 0 4 1007 825 130 22 0 chr3 55353208 55353346 -104246437 - B1_Mus1 SINE Alu -1 147 7 4 1007 487 264 62 41 chr3 55353569 55353715 -104246068 - MTEb LTR MaLR -1 378 230 4 1007 306 349 78 13 chr3 55354003 55354157 -104245626 - L1MD LINE L1 -2894 3252 3089 4 1007 366 267 84 33 chr3 55354340 55354480 -104245303 + LTR48 LTR ERV1 2 141 -401 4 1007 314 274 37 9 chr3 55354619 55354726 -104245057 + LTR48 LTR ERV1 368 477 -65 4 1007 655 254 227 8 chr3 55355010 55355248 -104244535 - MLT1H LTR MaLR -258 291 2 4 1007 298 281 12 12 chr3 55355333 55355416 -104244367 - Kanga1c DNA Tc2 -644 85 3 4 1007 977 123 104 0 chr3 55356122 55356285 -104243498 + B2_Mm2 SINE B2 2 181 -14 4 1007 349 286 149 19 chr3 55356425 55356639 -104243144 - L2 LINE L2 -675 2744 2503 4 1007 1240 294 100 24 chr3 55356752 55357292 -104242491 + Lx8 LINE L1 6809 7389 -84 4 1007 936 51 0 0 chr3 55357388 55357506 -104242277 + (TTTCC)n Simple_repeat Simple_repeat 3 120 0 4 1007 706 304 63 55 chr3 55357594 55357942 -104241841 - ORR1E LTR MaLR -2 357 7 4 1007 1217 310 47 40 chr3 55358016 55358158 -104241625 + MER21B LTR ERV1 423 569 -294 4 1007 2452 40 27 0 chr3 55358158 55358459 -104241324 - L1Md_F2 LINE L1 0 6582 6274 4 1007 1217 310 47 40 chr3 55358459 55358740 -104241043 + MER21B LTR ERV1 570 849 -14 4 1007 771 244 60 46 chr3 55358849 55359133 -104240650 - B4 SINE B4 0 292 5 4 1007 293 0 27 0 chr3 55359583 55359620 -104240163 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 4 1007 274 256 46 58 chr3 55360167 55360254 -104239529 - MTEb LTR MaLR 0 379 294 4 1007 1288 316 54 25 chr3 55360488 55361039 -104238744 - Lx8 LINE L1 -187 7286 6720 4 1007 1173 249 17 24 chr3 55361214 55361506 -104238277 + B4 SINE B4 3 292 0 4 1007 243 227 31 93 chr3 55361629 55361726 -104238057 - MLT1B LTR MaLR -230 160 70 4 1007 311 299 157 13 chr3 55361724 55361760 -104238023 + ID_B1 SINE B4 42 172 -120 4 1007 469 207 49 1 chr3 55361760 55361871 -104237912 + PB1D10 SINE Alu 1 118 -9 4 1007 311 299 157 13 chr3 55361871 55361883 -104237900 + ID_B1 SINE B4 173 223 -69 4 1007 1523 92 16 28 chr3 55362950 55363197 -104236586 - Lx LINE L1 -1 6653 6410 4 1007 13879 166 59 14 chr3 55363197 55363405 -104236378 - L1VL2 LINE L1 -1817 4069 3853 4 1007 180 0 0 0 chr3 55363405 55363425 -104236358 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 4 1007 13879 166 59 14 chr3 55363425 55363558 -104236225 - L1VL2 LINE L1 -2034 3852 3728 4 1007 1409 71 22 5 chr3 55363558 55363743 -104236040 - B2_Mm2 SINE B2 -6 189 2 4 1007 13879 149 62 11 chr3 55363743 55366877 -104232906 - L1VL2 LINE L1 -2159 3727 413 4 1007 643 298 22 51 chr3 55366963 55367071 -104232712 + L1MA4 LINE L1 5671 5777 -523 4 1007 423 0 0 0 chr3 55367071 55367118 -104232665 + (TG)n Simple_repeat Simple_repeat 1 47 0 4 1007 643 298 22 51 chr3 55367118 55367142 -104232641 + L1MA4 LINE L1 5778 5793 -507 4 1007 1486 172 169 0 chr3 55367142 55367462 -104232321 - ORR1D1 LTR MaLR 0 374 1 4 1007 643 298 22 51 chr3 55367462 55367604 -104232179 + L1MA4 LINE L1 5794 5938 -362 4 1007 656 229 0 0 chr3 55368100 55368222 -104231561 + RSINE1 SINE B4 20 141 -24 4 1007 303 304 9 29 chr3 55368391 55368496 -104231287 - L1M4 LINE L1 -1923 4223 4121 4 1007 746 132 107 34 chr3 55368824 55368973 -104230810 + RLTR22_Mus LTR ERVK 1649 1808 0 4 1007 188 61 61 0 chr3 55369990 55370023 -104229760 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 4 1007 281 222 56 90 chr3 55370042 55370073 -104229710 + B4A SINE B4 65 92 -200 4 1007 332 236 56 0 chr3 55370073 55370145 -104229638 + PB1D7 SINE Alu 4 79 -41 4 1007 232 279 15 0 chr3 55370196 55370264 -104229519 + ID4 SINE ID 4 72 -11 4 1007 1021 105 6 6 chr3 55370268 55370431 -104229352 + (GAAA)n Simple_repeat Simple_repeat 2 164 0 4 1007 322 371 20 59 chr3 55370469 55370492 -104229291 + ID_B1 SINE B4 68 213 -11 4 1007 491 302 34 0 chr3 55370492 55370621 -104229162 + B1F SINE Alu 6 138 -11 4 1007 804 195 0 45 chr3 55370628 55370784 -104228999 - B1_Mur3 SINE Alu 0 149 1 4 1007 458 271 87 64 chr3 55371001 55371246 -104228537 + Charlie2b DNA MER1_type 2448 2694 -88 4 1007 911 247 57 162 chr3 55371246 55371647 -104228136 - ORR1E LTR MaLR 0 359 1 4 1007 458 271 87 64 chr3 55371647 55371712 -104228071 + Charlie2b DNA MER1_type 2695 2765 -17 4 1007 334 53 35 0 chr3 55371837 55371894 -104227889 + (CAAA)n Simple_repeat Simple_repeat 3 61 0 4 1007 341 288 73 36 chr3 55372836 55372973 -104226810 + MIRb SINE MIR 50 191 -77 4 1007 1195 48 14 0 chr3 55372989 55373134 -104226649 + B1_Mm SINE Alu 1 147 0 4 1007 181 304 0 0 chr3 55373163 55373209 -104226574 + MIR SINE MIR 201 246 -16 4 1007 229 231 104 97 chr3 55373522 55373666 -104226117 - Charlie13a DNA Charlie -417 1097 953 4 1007 1418 86 16 0 chr3 55374205 55374391 -104225392 + B2_Mm2 SINE B2 2 190 -5 4 1007 600 111 0 0 chr3 55374650 55374740 -104225043 + (TG)n Simple_repeat Simple_repeat 1 90 0 4 1007 610 257 102 51 chr3 55374910 55375185 -104224598 - B4A SINE B4 -3 289 1 4 1007 207 100 0 0 chr3 55376565 55376595 -104223188 + (TTTG)n Simple_repeat Simple_repeat 3 32 0 4 1007 341 259 24 12 chr3 55376743 55376825 -104222958 - RSINE1 SINE B4 -8 157 75 4 1007 315 49 0 0 chr3 55376825 55376866 -104222917 + (TCC)n Simple_repeat Simple_repeat 2 42 0 4 1007 1073 128 0 0 chr3 55376910 55377058 -104222725 - B1_Mur4 SINE Alu -1 149 2 4 1007 281 324 0 39 chr3 55377068 55377145 -104222638 - ID4_ SINE ID -2 81 8 5 1007 261 258 61 20 chr3 55377278 55377377 -104222406 - RLTR42-int LTR ERVK -1167 4355 4253 5 1007 400 331 101 0 chr3 55379301 55379479 -104220304 - B3A SINE B2 0 198 3 5 1007 517 242 105 218 chr3 55379843 55380270 -104219513 + MTD LTR MaLR 1 419 0 5 1007 558 284 16 49 chr3 55380502 55380687 -104219096 + RMER15 LTR ERVL 343 521 -54 5 1007 341 262 172 11 chr3 55380864 55381038 -104218745 + ORSL DNA Tip100 61 262 -13 5 1007 319 313 28 129 chr3 55381402 55381669 -104218114 + ORR1D2 LTR MaLR 96 374 0 5 1007 2964 66 200 9 chr3 55381917 55382347 -104217436 - RLTR1B LTR ERV1 0 512 1 5 1007 63031 20 2 1 chr3 55382347 55389890 -104209893 - MMERGLN-int LTR ERV1 0 7556 1 5 1007 2964 66 200 9 chr3 55389890 55390320 -104209463 - RLTR1B LTR ERV1 0 512 1 5 1007 200 59 29 0 chr3 55391234 55391268 -104208515 + (TTTTTG)n Simple_repeat Simple_repeat 3 37 0 5 1007 305 312 111 65 chr3 55392292 55392491 -104207292 - LTR88c LTR Genie? -478 384 177 5 1007 388 145 118 24 chr3 55392814 55392899 -104206884 - B3 SINE B2 -2 214 122 5 1007 289 338 67 67 chr3 55392939 55393088 -104206695 + B1F2 SINE Alu 1 149 0 5 1007 307 330 108 17 chr3 55393589 55393765 -104206018 - L1M4 LINE L1 -383 5795 5604 5 1007 709 250 23 51 chr3 55394068 55394245 -104205538 - B3 SINE B2 0 216 45 5 1007 288 137 0 0 chr3 55395995 55396046 -104203737 + (TG)n Simple_repeat Simple_repeat 2 52 0 5 1007 344 198 69 50 chr3 55396256 55396357 -104203426 + L1M4 LINE L1 5279 5381 -765 5 1007 1426 153 212 27 chr3 55396357 55396687 -104203096 - ORR1B1 LTR MaLR -3 391 1 5 1007 217 358 96 40 chr3 55397501 55397626 -104202157 + MIRb SINE MIR 94 225 -43 5 1007 1039 269 46 3 chr3 55398098 55398404 -104201379 + L1MB2 LINE L1 5743 6061 -110 5 1007 422 302 107 7 chr3 55398424 55398564 -104201219 + B4A SINE B4 129 282 -10 5 1007 226 218 0 0 chr3 55398589 55398644 -104201139 + (CA)n Simple_repeat Simple_repeat 2 56 0 5 1007 472 336 69 47 chr3 55398797 55399035 -104200748 + MLT1A0 LTR MaLR 75 321 -44 5 1007 3432 71 60 9 chr3 55399035 55399487 -104200296 - MT2C_Mm LTR ERVL 0 475 1 5 1007 472 336 69 47 chr3 55399487 55399523 -104200260 + MLT1A0 LTR MaLR 322 355 -10 5 1007 810 255 59 13 chr3 55400510 55400748 -104199035 - MLT1D LTR MaLR 0 505 257 5 1007 186 0 28 56 chr3 55400802 55400838 -104198945 + (TCTTG)n Simple_repeat Simple_repeat 3 37 0 5 1007 375 189 15 8 chr3 55400853 55400986 -104198797 + (TG)n Simple_repeat Simple_repeat 1 134 0 5 1007 309 267 0 26 chr3 55400987 55401064 -104198719 - HAL1-3A_ME LINE L1 -830 2028 1954 5 1007 235 254 60 0 chr3 55401150 55401217 -104198566 + MTEa LTR MaLR 289 359 -20 5 1007 189 100 0 57 chr3 55401413 55401466 -104198317 + T-rich Low_complexity Low_complexity 2 51 0 5 1007 1578 208 104 18 chr3 55401466 55401849 -104197934 + MTD LTR MaLR 3 418 -1 5 1007 607 308 70 48 chr3 55402108 55402422 -104197361 - MLT2B4 LTR ERVL -233 323 3 5 1007 360 0 0 0 chr3 55402579 55402619 -104197164 + (CA)n Simple_repeat Simple_repeat 1 40 0 5 1007 1011 126 0 0 chr3 55402921 55403080 -104196703 + (TCTCC)n Simple_repeat Simple_repeat 1 159 0 5 1007 765 89 24 0 chr3 55403080 55403204 -104196579 + (TC)n Simple_repeat Simple_repeat 1 127 0 5 1007 498 33 0 0 chr3 55404669 55404729 -104195054 + (GGA)n Simple_repeat Simple_repeat 1 60 0 5 1007 705 115 0 0 chr3 55406078 55406174 -104193609 - MTD LTR MaLR -323 96 1 5 1007 198 71 0 0 chr3 55406692 55406720 -104193063 + (T)n Simple_repeat Simple_repeat 1 28 0 5 1007 38580 30 1 0 chr3 55406731 55414232 -104185551 - L1Md_T LINE L1 0 6585 1 5 1007 245 206 72 14 chr3 55414804 55414873 -104184910 - ID4_ SINE ID -10 73 1 5 1007 935 204 97 16 chr3 55415155 55415464 -104184319 - RMER17C LTR ERVK 0 410 77 5 1007 204 40 0 0 chr3 55415464 55415489 -104184294 + (GAA)n Simple_repeat Simple_repeat 2 26 0 5 1007 882 196 12 16 chr3 55415489 55415743 -104184040 - RMER17C LTR ERVK -157 253 1 5 1007 360 0 0 0 chr3 55416223 55416263 -104183520 + (T)n Simple_repeat Simple_repeat 1 40 0 5 1007 306 0 0 0 chr3 55416981 55417015 -104182768 + (TG)n Simple_repeat Simple_repeat 2 35 0 5 1007 243 0 0 0 chr3 55417030 55417057 -104182726 + (CA)n Simple_repeat Simple_repeat 2 28 0 5 1007 1206 89 0 0 chr3 55417760 55417929 -104181854 + (TTC)n Simple_repeat Simple_repeat 1 169 0 5 1007 597 270 61 12 chr3 55418093 55418258 -104181525 - RMER15 LTR ERVL -51 524 352 5 1007 241 332 100 56 chr3 55418453 55418702 -104181081 + ORR1E LTR MaLR 79 338 -21 5 1007 521 263 71 35 chr3 55419249 55419446 -104180337 - Lx8 LINE L1 -6 7467 7264 5 1007 238 301 88 25 chr3 55419714 55419874 -104179909 - L1MEd LINE L1 -5078 1041 872 5 1007 279 0 0 0 chr3 55420149 55420180 -104179603 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 5 1007 388 293 65 65 chr3 55421379 55421565 -104178218 + RMER15 LTR ERVL 383 568 -7 5 1007 388 241 71 50 chr3 55421764 55421904 -104177879 + B1F2 SINE Alu 5 147 -2 5 1007 213 296 69 39 chr3 55421987 55422089 -104177694 + MIRb SINE MIR 91 195 -73 5 1007 282 73 0 0 chr3 55422897 55422938 -104176845 + (T)n Simple_repeat Simple_repeat 1 41 0 5 1007 1890 149 119 3 chr3 55423151 55423495 -104176288 + ORR1C2 LTR MaLR 1 384 0 5 1007 366 295 55 41 chr3 55423614 55423759 -104176024 - LTR48 LTR ERV1 -640 147 1 5 1007 485 297 78 22 chr3 55424080 55424259 -104175524 - B4A SINE B4 -69 223 35 5 1007 539 309 89 49 chr3 55424716 55425037 -104174746 + MLT1A0 LTR MaLR 14 404 -4 5 1007 401 331 39 13 chr3 55425445 55425598 -104174185 - MTD LTR MaLR -258 161 5 5 1007 4948 35 71 5 chr3 55426148 55426757 -104173026 + L1Md_F2 LINE L1 5934 6582 0 5 1007 327 281 329 36 chr3 55427535 55427877 -104171906 + LTR82A LTR ERVL 264 704 -168 5 1007 272 309 0 47 chr3 55428069 55428154 -104171629 - ID_B1 SINE B4 -2 222 142 5 1007 362 287 68 23 chr3 55431595 55431727 -104168056 + MamRep434 DNA TcMar 111 248 -178 5 1007 896 281 38 59 chr3 55431807 55432103 -104167680 - B4 SINE B4 0 292 15 5 1007 387 241 40 40 chr3 55432710 55432887 -104166896 + (CCAA)n Simple_repeat Simple_repeat 2 178 0 5 1007 180 0 0 0 chr3 55432981 55433001 -104166782 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 5 1007 680 273 42 32 chr3 55433073 55433262 -104166521 + B3A SINE B2 8 198 0 5 1007 935 213 166 18 chr3 55433527 55433841 -104165942 + MTD LTR MaLR 1 397 -22 5 1007 212 170 0 19 chr3 55434383 55434437 -104165346 + (CA)n Simple_repeat Simple_repeat 1 53 0 5 1007 2133 270 95 6 chr3 55436297 55437124 -104162659 + RCHARR1 DNA MER1_type 74 973 -1 5 1007 26 82 0 0 chr3 55438061 55438122 -104161661 + AT_rich Low_complexity Low_complexity 1 61 0 5 1007 522 262 199 13 chr3 55439165 55439401 -104160382 - B4A SINE B4 -6 286 7 5 1007 684 93 0 0 chr3 55441045 55441142 -104158641 + (TG)n Simple_repeat Simple_repeat 2 98 0 5 1007 3272 80 13 2 chr3 55442517 55442968 -104156815 + Lx3_Mus LINE L1 6554 7009 0 5 1007 405 0 0 0 chr3 55443140 55443185 -104156598 + (CA)n Simple_repeat Simple_repeat 2 46 0 5 1008 751 200 7 0 chr3 55443824 55443964 -104155819 + B1_Mur1 SINE Alu 2 142 -7 5 1008 210 118 0 0 chr3 55444307 55444341 -104155442 + (TG)n Simple_repeat Simple_repeat 1 34 0 5 1008 739 239 22 28 chr3 55444343 55444524 -104155259 - B3A SINE B2 -16 182 3 5 1008 546 163 0 0 chr3 55444628 55444726 -104155057 + (CA)n Simple_repeat Simple_repeat 1 98 0 5 1008 23 0 0 0 chr3 55446883 55446906 -104152877 + AT_rich Low_complexity Low_complexity 1 23 0 5 1008 721 304 65 0 chr3 55447301 55447531 -104152252 - B4A SINE B4 -2 290 46 5 1008 853 254 88 15 chr3 55449523 55449838 -104149945 + ORR1E LTR MaLR 6 351 -19 5 1008 276 318 96 22 chr3 55450937 55451072 -104148711 + L2a LINE L2 3282 3426 0 5 1008 693 235 192 8 chr3 55456977 55457217 -104142566 + RMER21B LTR ERV1 284 567 -275 5 1008 438 295 57 7 chr3 55457487 55457627 -104142156 - RSINE1 SINE B4 -16 149 3 5 1008 3423 23 8 0 chr3 55458939 55459332 -104140451 + MTA_Mm LTR MaLR 1 396 0 5 1008 204 227 23 0 chr3 55459805 55459849 -104139934 + CT-rich Low_complexity Low_complexity 4 48 0 5 1008 351 210 0 0 chr3 55461876 55461938 -104137845 - L1MB1 LINE L1 -276 5892 5831 5 1008 300 119 0 0 chr3 55463032 55463091 -104136692 + (A)n Simple_repeat Simple_repeat 1 59 0 5 1008 229 159 91 0 chr3 55463941 55463985 -104135798 - L1M2b LINE L1 -6083 1126 1079 5 1008 741 240 28 37 chr3 55464423 55464639 -104135144 + B3 SINE B2 3 216 0 5 1008 678 239 58 0 chr3 55464967 55465122 -104134661 + RSINE1 SINE B4 2 165 0 5 1008 1119 117 0 0 chr3 55465125 55465305 -104134478 + (CA)n Simple_repeat Simple_repeat 1 180 0 5 1008 1185 128 0 0 chr3 55465317 55465685 -104134098 + (CA)n Simple_repeat Simple_repeat 1 368 0 5 1008 205 178 0 0 chr3 55465793 55465838 -104133945 + (CTCTG)n Simple_repeat Simple_repeat 3 47 0 5 1008 189 107 0 0 chr3 55466680 55466708 -104133075 + (T)n Simple_repeat Simple_repeat 1 28 0 5 1008 661 212 13 52 chr3 55468087 55468232 -104131551 + B1_Mur1 SINE Alu 2 142 -7 5 1008 390 21 0 0 chr3 55468232 55468279 -104131504 + (CAAAC)n Simple_repeat Simple_repeat 2 48 0 5 1008 576 0 0 0 chr3 55469239 55469303 -104130480 + (CAAAC)n Simple_repeat Simple_repeat 1 64 0 5 1008 252 143 0 0 chr3 55470234 55470276 -104129507 + (GGAGAA)n Simple_repeat Simple_repeat 4 45 0 5 1008 348 322 108 4 chr3 55471444 55471684 -104128099 - L1M5 LINE L1 -607 5587 5323 6 1008 542 267 14 101 chr3 55471685 55471902 -104127881 - B3A SINE B2 0 198 1 6 1008 2204 241 108 31 chr3 55472427 55473191 -104126592 - RMER1C Other Other 0 1342 105 6 1008 288 0 0 0 chr3 55473267 55473299 -104126484 + (TATG)n Simple_repeat Simple_repeat 4 35 0 6 1008 644 296 22 25 chr3 55473534 55473784 -104125999 + Lx7 LINE L1 7110 7350 -346 6 1008 227 284 92 31 chr3 55474072 55474170 -104125613 - L1M3 LINE L1 -1980 4160 4057 6 1008 270 0 0 0 chr3 55474221 55474251 -104125532 + (GA)n Simple_repeat Simple_repeat 2 31 0 6 1008 276 290 0 0 chr3 55475675 55475744 -104124039 - B1_Mur1 SINE Alu -25 124 56 6 1008 266 26 53 0 chr3 55477380 55477418 -104122365 + (TCCC)n Simple_repeat Simple_repeat 2 41 0 6 1008 517 305 62 97 chr3 55480206 55480627 -104119156 + L1M3 LINE L1 5344 5749 -431 6 1008 458 276 33 52 chr3 55480978 55481131 -104118652 - RSINE1 SINE B4 0 165 16 6 1008 863 98 0 0 chr3 55481245 55481377 -104118406 - B1_Mur4 SINE Alu 0 150 19 6 1008 359 212 38 106 chr3 55481290 55481422 -104118361 - MT2B LTR ERVL -344 257 135 6 1008 267 298 32 11 chr3 55482775 55482870 -104116913 + MIRb SINE MIR 61 157 -111 6 1008 488 200 69 10 chr3 55483320 55483421 -104116362 - PB1D9 SINE Alu -9 111 5 6 1008 234 0 0 0 chr3 55484149 55484175 -104115608 + (TC)n Simple_repeat Simple_repeat 2 27 0 6 1008 471 118 0 0 chr3 55484175 55484250 -104115533 + (TA)n Simple_repeat Simple_repeat 1 76 0 6 1008 240 234 76 25 chr3 55485514 55485593 -104114190 - ID2 SINE ID 0 83 1 6 1008 300 154 0 0 chr3 55485886 55485938 -104113845 + (TA)n Simple_repeat Simple_repeat 2 53 0 6 1008 364 209 68 17 chr3 55486315 55486432 -104113351 - Tigger15a DNA TcMar -33 682 560 6 1008 221 336 42 21 chr3 55487841 55487984 -104111799 - MIR SINE MIR -25 237 92 6 1008 264 269 127 7 chr3 55488783 55488933 -104110850 + MLT1H-int LTR MaLR 806 973 -436 6 1008 333 0 0 0 chr3 55490518 55490555 -104109228 + (CA)n Simple_repeat Simple_repeat 1 37 0 6 1008 718 184 12 0 chr3 55490624 55490765 -104109018 - B1_Mur4 SINE Alu 0 150 3 6 1008 998 261 104 19 chr3 55493010 55493319 -104106464 + Lx8 LINE L1 6242 6576 -897 6 1008 430 288 79 77 chr3 55493456 55493897 -104105886 - RLTR11A2 LTR ERVK -85 442 1 6 1008 1040 272 156 15 chr3 55493902 55494369 -104105414 + Lx8 LINE L1 6665 7197 -276 6 1008 405 0 0 0 chr3 55494503 55494548 -104105235 + (CAA)n Simple_repeat Simple_repeat 3 47 0 6 1008 417 153 0 0 chr3 55494604 55494676 -104105107 + (TA)n Simple_repeat Simple_repeat 1 72 0 6 1008 201 143 0 0 chr3 55494925 55494960 -104104823 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 6 1008 735 241 90 41 chr3 55495213 55495503 -104104280 + RLTR28B LTR ERVL 1 304 -177 6 1008 22 70 0 0 chr3 55496460 55496503 -104103280 + AT_rich Low_complexity Low_complexity 1 43 0 6 1008 512 135 52 45 chr3 55496827 55496982 -104102801 + CT-rich Low_complexity Low_complexity 5 160 0 6 1008 274 248 83 0 chr3 55498352 55498461 -104101322 + MER33 DNA MER1_type 128 245 -79 6 1008 333 0 0 0 chr3 55498672 55498709 -104101074 + (CA)n Simple_repeat Simple_repeat 2 38 0 6 1008 190 95 0 45 chr3 55499939 55499983 -104099800 + (CAAAA)n Simple_repeat Simple_repeat 4 45 0 6 1008 332 281 66 28 chr3 55500000 55500109 -104099674 + PB1D10 SINE Alu 12 124 -25 1 1008 184 150 16 32 chr3 55500687 55500749 -104099034 + A-rich Low_complexity Low_complexity 1 61 0 2 1008 1770 89 15 30 chr3 55500885 55501150 -104098633 - L1_Mus4 LINE L1 -1 6635 6375 3 1008 286 53 0 0 chr3 55501150 55501188 -104098595 + Lx LINE L1 6364 6401 -253 4 1008 270 263 41 111 chr3 55501610 55501781 -104098002 - RMER10A LTR ERVL -25 417 259 5 1008 343 305 133 33 chr3 55501807 55502078 -104097705 - RMER10A LTR ERVL -144 298 1 5 1008 21 0 0 0 chr3 55503073 55503094 -104096689 + AT_rich Low_complexity Low_complexity 1 21 0 6 1008 289 212 25 0 chr3 55504057 55504137 -104095646 + (TCTA)n Simple_repeat Simple_repeat 1 82 0 7 1008 1191 62 0 20 chr3 55504426 55504563 -104095220 + B1_Mus2 SINE Alu 2 138 -9 8 1008 222 37 0 0 chr3 55504563 55504590 -104095193 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 9 1008 201 161 0 0 chr3 55504600 55504631 -104095152 + polypurine Low_complexity Low_complexity 1 31 0 1 1008 446 211 24 18 chr3 55505226 55505395 -104094388 + GA-rich Low_complexity Low_complexity 3 172 0 1 1008 30 45 0 0 chr3 55506631 55506675 -104093108 + AT_rich Low_complexity Low_complexity 1 44 0 1 1008 229 269 0 0 chr3 55507089 55507141 -104092642 + (TG)n Simple_repeat Simple_repeat 2 53 0 1 1008 1530 215 120 8 chr3 55507906 55508281 -104091502 - MTD LTR MaLR 0 419 3 1 1008 1774 234 128 33 chr3 55508845 55509415 -104090368 + Lx8 LINE L1 6848 7471 -2 1 1008 21 82 0 0 chr3 55509425 55509474 -104090309 + AT_rich Low_complexity Low_complexity 1 49 0 1 1008 515 300 76 28 chr3 55509513 55509657 -104090126 + RSINE1 SINE B4 1 151 -14 1 1008 246 105 0 0 chr3 55509660 55509698 -104090085 + (CA)n Simple_repeat Simple_repeat 1 38 0 1 1008 596 292 90 7 chr3 55509813 55509958 -104089825 + RSINE1 SINE B4 9 165 0 1 1008 227 217 0 0 chr3 55510547 55510593 -104089190 - Arthur1C DNA Tip100 -308 55 10 2 1008 351 245 54 54 chr3 55512103 55512215 -104087568 + PB1 SINE Alu 14 125 -2 2 1008 300 247 27 0 chr3 55512219 55512292 -104087491 + ID2 SINE ID 3 77 -6 2 1008 1559 220 79 72 chr3 55512718 55512776 -104087007 - MTD LTR MaLR 0 419 369 2 1008 423 0 0 0 chr3 55512776 55512823 -104086960 + (CA)n Simple_repeat Simple_repeat 2 48 0 2 1008 1559 220 79 72 chr3 55512823 55513180 -104086603 - MTD LTR MaLR -51 368 1 2 1008 234 240 0 0 chr3 55513343 55513393 -104086390 + (TG)n Simple_repeat Simple_repeat 1 50 0 2 1008 2599 65 0 9 chr3 55515004 55515345 -104084438 + L1_Mus1 LINE L1 5705 6042 -525 2 1008 226 100 0 0 chr3 55515441 55515471 -104084312 - L1MC4 LINE L1 -906 7136 7107 2 1008 397 301 10 10 chr3 55515877 55515981 -104083802 + PB1D10 SINE Alu 5 108 -9 2 1008 590 243 108 17 chr3 55516728 55516921 -104082862 - B3 SINE B2 -7 209 5 2 1008 22 35 0 0 chr3 55516997 55517026 -104082757 + AT_rich Low_complexity Low_complexity 1 29 0 3 1008 393 212 0 0 chr3 55517031 55517097 -104082686 - B3 SINE B2 -150 66 1 3 1008 459 35 0 0 chr3 55518060 55518117 -104081666 + (CA)n Simple_repeat Simple_repeat 2 58 0 3 1008 21 0 0 0 chr3 55518885 55518906 -104080877 + AT_rich Low_complexity Low_complexity 1 21 0 3 1008 295 259 0 66 chr3 55520077 55520168 -104079615 - PB1D10 SINE Alu 0 117 33 3 1008 451 281 35 41 chr3 55520173 55520318 -104079465 + B4 SINE B4 21 164 -128 3 1008 396 0 0 0 chr3 55520431 55520475 -104079308 + (TA)n Simple_repeat Simple_repeat 2 45 0 3 1008 24 0 0 0 chr3 55520485 55520509 -104079274 + AT_rich Low_complexity Low_complexity 1 24 0 3 1008 221 315 12 0 chr3 55520686 55520769 -104079014 + B3A SINE B2 2 87 -129 3 1008 225 0 0 0 chr3 55520803 55520828 -104078955 + (GGAA)n Simple_repeat Simple_repeat 2 26 0 3 1008 248 277 58 19 chr3 55520851 55520954 -104078829 + B4A SINE B4 186 292 0 3 1008 275 366 0 11 chr3 55522421 55522515 -104077268 - MER119 DNA MER1_type -4 579 487 4 1008 249 336 53 8 chr3 55522738 55522870 -104076913 + MLT1A1 LTR MaLR 271 408 0 4 1008 264 308 54 103 chr3 55522970 55523173 -104076610 - MER119 DNA MER1_type -248 335 143 4 1008 1083 64 0 21 chr3 55523394 55523538 -104076245 + B1_Mm SINE Alu 7 147 0 4 1008 548 40 27 0 chr3 55523560 55523634 -104076149 + (GAAA)n Simple_repeat Simple_repeat 2 77 0 4 1008 25 51 0 0 chr3 55523658 55523697 -104076086 + AT_rich Low_complexity Low_complexity 1 39 0 4 1008 1690 135 29 66 chr3 55524487 55524836 -104074947 + RMER10B LTR ERVL 1 336 -62 4 1008 504 0 0 0 chr3 55524836 55524892 -104074891 + (TA)n Simple_repeat Simple_repeat 2 57 0 4 1008 252 329 103 35 chr3 55525317 55525462 -104074321 + L3 LINE CR1 3143 3297 -1192 4 1008 851 36 9 0 chr3 55526200 55526311 -104073472 + (TC)n Simple_repeat Simple_repeat 1 112 0 4 1008 273 29 0 0 chr3 55526311 55526344 -104073439 + (CA)n Simple_repeat Simple_repeat 1 34 0 4 1008 233 98 0 24 chr3 55526684 55526726 -104073057 + (TCC)n Simple_repeat Simple_repeat 1 41 0 5 1008 561 179 16 49 chr3 55526726 55526849 -104072934 - PB1D9 SINE Alu 0 120 2 5 1008 207 88 0 0 chr3 55527930 55527964 -104071819 + (T)n Simple_repeat Simple_repeat 1 34 0 5 1008 511 282 47 7 chr3 55527964 55528114 -104071669 - MER58A DNA MER1_type -15 209 54 5 1008 316 218 0 39 chr3 55528674 55528803 -104070980 + (TATATG)n Simple_repeat Simple_repeat 1 124 0 5 1008 803 229 112 27 chr3 55528847 55529035 -104070748 - B3 SINE B2 -12 204 1 5 1008 460 355 51 28 chr3 55529035 55529252 -104070531 - B4A SINE B4 -62 230 9 5 1008 1147 116 66 0 chr3 55529267 55529448 -104070335 - B2_Mm2 SINE B2 -1 194 2 5 1008 315 256 73 1 chr3 55529539 55529649 -104070134 + MIR SINE MIR 57 176 -92 5 1008 6095 16 0 0 chr3 55530181 55530872 -104068911 - L1_Mm LINE L1 -1569 4314 3624 5 1008 5266 20 0 0 chr3 55530865 55531462 -104068321 + L1Md_F2 LINE L1 4990 5586 -297 6 1008 8645 41 1 25 chr3 55531462 55532483 -104067300 + L1Md_F2 LINE L1 5587 6582 0 6 1008 283 311 86 26 chr3 55532676 55532828 -104066955 + LTR41 LTR ERVL 14 174 -584 6 1008 483 331 155 18 chr3 55532901 55533289 -104066494 + LTR41 LTR ERVL 320 760 -8 6 1008 404 259 103 23 chr3 55534890 55535064 -104064719 + Charlie2b DNA MER1_type 1791 1978 -804 6 1008 290 242 0 21 chr3 55535263 55535356 -104064427 - Lx6 LINE L1 -6 7454 7364 6 1008 183 114 0 0 chr3 55535802 55535837 -104063946 + (T)n Simple_repeat Simple_repeat 1 35 0 6 1008 204 338 47 70 chr3 55536284 55536583 -104063200 - L2 LINE L2 -373 3046 2755 6 1008 198 394 24 0 chr3 55537729 55537856 -104061927 + L2c LINE L2 2937 3066 -321 6 1008 852 260 33 33 chr3 55538203 55538418 -104061365 - B3 SINE B2 -1 215 1 6 1008 25 51 0 0 chr3 55538429 55538468 -104061315 + AT_rich Low_complexity Low_complexity 1 39 0 6 1008 242 349 60 60 chr3 55538526 55538642 -104061141 + PB1D10 SINE Alu 1 116 -1 6 1008 1576 185 287 81 chr3 55538833 55539275 -104060508 + MT2A LTR ERVL 1 533 0 7 1008 828 241 25 0 chr3 55540270 55540428 -104059355 + RSINE1 SINE B4 4 165 0 7 1008 510 167 0 0 chr3 55540428 55540560 -104059223 + (CA)n Simple_repeat Simple_repeat 1 132 0 7 1008 191 250 15 30 chr3 55540990 55541056 -104058727 - L3 LINE CR1 -858 3631 3567 7 1008 279 0 0 0 chr3 55541442 55541473 -104058310 + (TG)n Simple_repeat Simple_repeat 2 32 0 7 1008 1333 109 15 40 chr3 55542091 55542291 -104057492 + B2_Mm2 SINE B2 1 195 0 7 1008 215 338 40 0 chr3 55542519 55542593 -104057190 - L2b LINE L2 -30 3345 3269 7 1008 210 139 0 0 chr3 55544428 55544464 -104055319 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 7 1008 22 0 0 0 chr3 55544805 55544827 -104054956 + AT_rich Low_complexity Low_complexity 1 22 0 7 1008 225 0 0 0 chr3 55546668 55546693 -104053090 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 7 1008 773 300 74 0 chr3 55548611 55548868 -104050915 + B4A SINE B4 1 276 -16 8 1008 278 311 22 22 chr3 55549456 55549548 -104050235 + MLT1A1 LTR MaLR 202 293 -115 8 1008 333 314 84 21 chr3 55551518 55551661 -104048122 + HAL1-3A_ME LINE L1 2285 2436 -422 8 1008 339 326 73 22 chr3 55552544 55552723 -104047060 + MIRb SINE MIR 5 192 -76 8 1008 523 237 114 0 chr3 55552728 55552842 -104046941 + RSINE1 SINE B4 3 129 -36 8 1008 336 286 33 11 chr3 55553143 55553235 -104046548 + PB1D10 SINE Alu 2 95 -22 8 1008 223 322 89 65 chr3 55553338 55553461 -104046322 + MIRb SINE MIR 32 157 -111 8 1008 1087 59 73 0 chr3 55553503 55553639 -104046144 - B1_Mus2 SINE Alu 0 147 2 8 1008 200 304 78 52 chr3 55553843 55553996 -104045787 + MIR SINE MIR 81 237 -25 8 1008 232 179 68 82 chr3 55554004 55554018 -104045765 + ID4 SINE ID 1 72 -11 8 1008 270 228 0 34 chr3 55554018 55554077 -104045706 + tRNA-Ala-GCY_ tRNA tRNA 10 66 -9 9 1008 381 22 0 0 chr3 55554370 55554416 -104045367 + (CA)n Simple_repeat Simple_repeat 2 47 0 9 1008 23 0 0 0 chr3 55555978 55556001 -104043782 + AT_rich Low_complexity Low_complexity 1 23 0 9 1008 620 153 99 0 chr3 55556327 55556438 -104043345 + B1_Mur3 SINE Alu 3 124 -25 9 1008 419 121 207 25 chr3 55556647 55556735 -104043048 + B1_Mus2 SINE Alu 4 104 -16 9 1008 534 309 87 115 chr3 55558071 55558670 -104041113 + RLTR18 LTR ERVK 25 606 -10 9 1008 986 177 0 13 chr3 55561400 55561549 -104038234 + B1_Mus2 SINE Alu 1 147 0 9 1008 1810 255 0 19 chr3 55562268 55562695 -104037088 + MTD LTR MaLR 1 419 0 9 1008 1134 150 116 11 chr3 55562924 55563113 -104036670 + B3 SINE B2 1 209 -7 9 1008 455 273 62 88 chr3 55563272 55563465 -104036318 + B4A SINE B4 1 188 -104 9 1008 372 22 0 0 chr3 55563507 55563552 -104036231 + (CA)n Simple_repeat Simple_repeat 1 45 0 1 1008 1062 226 19 5 chr3 55563577 55563782 -104036001 - B3 SINE B2 -7 209 2 1 1008 440 253 95 12 chr3 55564468 55564636 -104035147 - L1M4 LINE L1 -3340 2806 2625 1 1008 603 120 0 0 chr3 55564718 55564835 -104034948 + (CA)n Simple_repeat Simple_repeat 2 118 0 1 1008 1655 171 108 0 chr3 55564859 55565192 -104034591 + ORR1C2 LTR MaLR 1 369 -15 1 1008 249 57 0 0 chr3 55565192 55565227 -104034556 + (CAGA)n Simple_repeat Simple_repeat 4 38 0 1 1008 311 284 36 22 chr3 55565371 55565508 -104034275 - L1M4 LINE L1 -3549 2597 2459 1 1008 710 172 16 0 chr3 55565563 55565685 -104034098 - B1_Mur4 SINE Alu -1 149 26 1 1008 312 248 42 25 chr3 55565685 55565805 -104033978 - L1M4b LINE L1 -3690 3644 3523 1 1008 382 286 0 45 chr3 55565855 55565965 -104033818 - B1_Mur2 SINE Alu -43 106 2 1 1008 834 171 36 0 chr3 55565977 55566117 -104033666 - B1_Mur4 SINE Alu -3 147 3 1 1008 480 62 0 0 chr3 55566785 55566849 -104032934 + (TA)n Simple_repeat Simple_repeat 1 64 0 1 1008 316 310 42 42 chr3 55566911 55567029 -104032754 - B3 SINE B2 -34 182 65 1 1008 27 73 0 0 chr3 55567306 55567361 -104032422 + AT_rich Low_complexity Low_complexity 1 55 0 1 1008 2491 146 25 17 chr3 55570433 55570837 -104028946 - MTB_Mm LTR MaLR 0 407 1 1 1008 911 223 25 21 chr3 55571336 55571574 -104028209 + ORR1D1 LTR MaLR 2 240 -134 1 1008 417 246 64 50 chr3 55571648 55571789 -104027994 + B4A SINE B4 116 258 -34 1 1008 435 19 0 0 chr3 55571849 55571901 -104027882 + (CA)n Simple_repeat Simple_repeat 1 52 0 1 1008 180 0 0 0 chr3 55571901 55571920 -104027863 + (GA)n Simple_repeat Simple_repeat 2 21 0 1 1008 306 221 39 0 chr3 55572105 55572182 -104027601 + ORR1D1 LTR MaLR 132 211 -163 1 1008 461 47 16 0 chr3 55573114 55573178 -104026605 + (TC)n Simple_repeat Simple_repeat 2 66 0 1 1008 261 0 0 0 chr3 55573221 55573250 -104026533 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 1 1008 729 168 21 21 chr3 55573675 55573815 -104025968 + B1_Mur4 SINE Alu 11 150 0 1 1008 1185 62 0 34 chr3 55574036 55574185 -104025598 + B1_Mus2 SINE Alu 4 147 0 1 1008 207 0 0 0 chr3 55574223 55574246 -104025537 + (CAAAC)n Simple_repeat Simple_repeat 2 24 0 1 15 210 382 70 35 chr3 55574468 55574582 -104025201 + RSINE1 SINE B4 34 151 -14 1 1009 395 319 143 19 chr3 55575082 55575341 -104024442 - B4 SINE B4 0 292 2 1 1009 787 204 0 28 chr3 55575640 55575781 -104024002 + B1_Mur3 SINE Alu 7 143 -6 1 1009 246 32 0 0 chr3 55575950 55575981 -104023802 + (CA)n Simple_repeat Simple_repeat 2 32 0 1 1009 322 321 18 0 chr3 55576230 55576342 -104023441 - Tigger5 DNA MER2_type -1 2405 2292 1 1009 459 250 86 0 chr3 55577032 55577160 -104022623 - B1F SINE Alu -8 141 3 1 1009 235 351 37 62 chr3 55577432 55577593 -104022190 - RSINE1 SINE B4 -6 159 3 1 1009 21 0 0 0 chr3 55577698 55577719 -104022064 + AT_rich Low_complexity Low_complexity 1 21 0 1 1009 347 291 205 0 chr3 55579814 55579965 -104019818 + B3A SINE B2 1 182 -16 1 1009 727 217 194 0 chr3 55580719 55580899 -104018884 - B3 SINE B2 0 216 2 1 1009 22 94 0 0 chr3 55580966 55581030 -104018753 + AT_rich Low_complexity Low_complexity 1 64 0 1 1009 225 0 0 0 chr3 55581433 55581458 -104018325 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 1 1009 387 0 0 0 chr3 55581709 55581752 -104018031 + (CA)n Simple_repeat Simple_repeat 1 43 0 1 1009 204 158 0 0 chr3 55582003 55582041 -104017742 + CT-rich Low_complexity Low_complexity 2 39 0 1 1009 297 0 0 0 chr3 55582985 55583018 -104016765 + (TG)n Simple_repeat Simple_repeat 1 33 0 1 1009 261 0 0 0 chr3 55583018 55583046 -104016737 + (GA)n Simple_repeat Simple_repeat 1 29 0 1 1009 23 0 0 0 chr3 55583773 55583796 -104015987 + AT_rich Low_complexity Low_complexity 1 23 0 1 1009 279 71 0 0 chr3 55591905 55591947 -104007836 + (CCCG)n Simple_repeat Simple_repeat 1 42 0 1 1009 342 0 0 0 chr3 55592305 55592343 -104007440 + (CA)n Simple_repeat Simple_repeat 2 39 0 1 1009 306 0 0 0 chr3 55592395 55592429 -104007354 + (TC)n Simple_repeat Simple_repeat 2 35 0 1 1009 405 0 0 0 chr3 55592429 55592473 -104007310 + (TA)n Simple_repeat Simple_repeat 2 46 0 1 1009 600 285 198 22 chr3 55593711 55594116 -104005667 - MER90a LTR ERV1 -87 527 52 1 1009 260 111 22 0 chr3 55594395 55594440 -104005343 + (TCC)n Simple_repeat Simple_repeat 1 46 0 1 1009 458 196 72 36 chr3 55594440 55594551 -104005232 - B1_Mur3 SINE Alu -6 143 29 1 1009 506 126 147 0 chr3 55594907 55595002 -104004781 + B1_Mus2 SINE Alu 30 138 -9 1 1009 414 0 0 0 chr3 55595002 55595048 -104004735 + (CCA)n Simple_repeat Simple_repeat 1 46 0 1 1009 596 258 119 0 chr3 55595064 55595215 -104004568 + B3A SINE B2 3 171 -27 1 1009 203 0 37 0 chr3 55595244 55595271 -104004512 + (TAAAA)n Simple_repeat Simple_repeat 2 29 0 1 1009 274 265 10 16 chr3 55596992 55597090 -104002693 - MIR SINE MIR -43 225 124 1 1009 562 196 304 0 chr3 55597590 55597758 -104002025 - URR1A DNA MER1_type -7 219 1 1 1009 576 300 25 12 chr3 55598769 55598782 -104001001 - RSINE1 SINE B4 0 165 153 1 1009 414 0 0 0 chr3 55598782 55598828 -104000955 + (TC)n Simple_repeat Simple_repeat 1 46 0 1 1009 297 0 0 0 chr3 55598828 55598860 -104000923 + (CA)n Simple_repeat Simple_repeat 1 33 0 1 1009 576 300 25 12 chr3 55598860 55599007 -104000776 - RSINE1 SINE B4 -13 152 3 1 1009 198 0 0 0 chr3 55599122 55599144 -104000639 + (CCA)n Simple_repeat Simple_repeat 1 22 0 1 1009 1271 60 125 12 chr3 55599647 55599815 -103999968 + B2_Mm2 SINE B2 1 187 -8 1 1009 990 90 113 0 chr3 55599859 55599992 -103999791 - B1_Mus1 SINE Alu 0 148 1 1 1009 897 170 66 38 chr3 55600028 55600211 -103999572 + B2_Mm2 SINE B2 1 188 -7 1 1009 602 314 17 22 chr3 55600217 55600396 -103999387 - B3A SINE B2 -20 178 1 1 1009 913 219 58 73 chr3 55601504 55601765 -103998018 - MER121 Unknown Unknown -98 314 58 1 1009 1135 248 26 10 chr3 55602625 55602931 -103996852 + L1_Mur3 LINE L1 282 592 -7120 1 1009 534 303 123 17 chr3 55603226 55603690 -103996093 + L1MB7 LINE L1 5655 6167 -17 1 1009 1163 201 34 0 chr3 55604628 55604837 -103994946 - B3 SINE B2 0 216 1 1 1009 664 271 32 42 chr3 55604871 55604895 -103994888 - B3 SINE B2 -5 211 189 1 1009 1816 188 92 6 chr3 55604895 55605233 -103994550 + ORR1B2 LTR MaLR 1 367 0 1 1009 664 271 32 42 chr3 55605233 55605397 -103994386 - B3 SINE B2 -28 188 25 1 1009 488 235 299 6 chr3 55606349 55606516 -103993267 - B3 SINE B2 0 216 1 1 1009 23 0 0 0 chr3 55606791 55606814 -103992969 + AT_rich Low_complexity Low_complexity 1 23 0 1 1009 237 257 26 34 chr3 55607023 55607060 -103992723 + (TCTCTG)n Simple_repeat Simple_repeat 6 42 0 1 1009 477 0 0 0 chr3 55607060 55607113 -103992670 + (CA)n Simple_repeat Simple_repeat 1 53 0 1 1009 237 257 26 34 chr3 55607113 55607192 -103992591 + (TCTCTG)n Simple_repeat Simple_repeat 6 83 0 1 1009 25 31 0 0 chr3 55607462 55607494 -103992289 + AT_rich Low_complexity Low_complexity 1 32 0 1 1009 246 254 180 66 chr3 55608316 55608438 -103991345 - B1_Mm SINE Alu -11 136 1 1 1009 274 244 152 16 chr3 55609404 55609529 -103990254 - MIRc SINE MIR -31 237 96 1 1009 350 224 53 53 chr3 55609606 55609719 -103990064 - PB1D10 SINE Alu -4 113 1 1 1009 206 289 184 0 chr3 55611451 55611527 -103988256 + L2b LINE L2 3285 3374 -1 1 1009 279 243 40 13 chr3 55612625 55612700 -103987083 - ID4_ SINE ID -5 78 2 1 1009 266 222 34 80 chr3 55613069 55613157 -103986626 - ID SINE ID -135 89 6 1 1009 228 340 26 44 chr3 55613386 55613500 -103986283 + MIRc SINE MIR 92 203 -65 1 1009 261 286 39 0 chr3 55613949 55614026 -103985757 - ID4 SINE ID -3 80 1 1 1009 329 295 22 37 chr3 55614046 55614180 -103985603 - B1_Mur1 SINE Alu -8 141 10 1 1009 663 48 0 0 chr3 55614876 55614959 -103984824 + (GA)n Simple_repeat Simple_repeat 2 84 0 1 1009 207 254 27 27 chr3 55614961 55615034 -103984749 + GA-rich Low_complexity Low_complexity 3 75 0 1 1009 302 237 53 0 chr3 55616895 55616971 -103982812 + ID4_ SINE ID 4 83 0 1 1009 211 212 20 39 chr3 55616971 55617062 -103982721 + A-rich Low_complexity Low_complexity 1 89 0 1 1009 459 0 0 0 chr3 55617856 55617907 -103981876 + (CA)n Simple_repeat Simple_repeat 2 52 0 1 1009 665 44 33 0 chr3 55618217 55618308 -103981475 + (CTATT)n Simple_repeat Simple_repeat 3 96 0 1 1009 183 133 33 0 chr3 55618473 55618503 -103981280 + L2a LINE L2 3361 3391 -35 1 1009 382 264 2 29 chr3 55621854 55621980 -103977803 + B1_Mur1 SINE Alu 17 136 -14 1 1009 407 202 223 0 chr3 55622478 55622572 -103977211 - B4A SINE B4 -123 169 55 1 1009 255 292 0 22 chr3 55622678 55622769 -103977014 + (CATATA)n Simple_repeat Simple_repeat 5 93 0 1 1009 225 94 0 0 chr3 55622824 55622856 -103976927 + (CA)n Simple_repeat Simple_repeat 2 33 0 1 1009 216 0 0 0 chr3 55624199 55624223 -103975560 + (A)n Simple_repeat Simple_repeat 1 24 0 1 1009 225 150 0 0 chr3 55624438 55624478 -103975305 + B3A SINE B2 1 40 -158 1 1009 1156 195 95 0 chr3 55624499 55624740 -103975043 - ORR1C2 LTR MaLR -5 379 116 1 1009 3264 209 95 27 chr3 55624737 55625960 -103973823 - ORR1C2-int LTR MaLR -57 1313 1 1 1009 680 124 9 26 chr3 55625960 55626076 -103973707 - ORR1C2 LTR MaLR 0 384 271 1 1009 291 157 0 0 chr3 55626076 55626127 -103973656 + (TCTA)n Simple_repeat Simple_repeat 4 54 0 1 1009 198 91 0 0 chr3 55626471 55626504 -103973279 + (T)n Simple_repeat Simple_repeat 1 33 0 1 1009 1159 68 0 7 chr3 55626505 55626652 -103973131 - B1_Mus2 SINE Alu 0 147 2 1 1009 245 0 65 22 chr3 55626704 55626750 -103973033 + (CAAAAA)n Simple_repeat Simple_repeat 1 48 0 2 1009 3366 121 16 57 chr3 55626872 55627503 -103972280 + Lx4A LINE L1 5779 6391 -667 2 1009 2269 165 63 7 chr3 55627503 55627930 -103971853 + Lx4A LINE L1 6608 7058 0 2 1009 226 158 0 50 chr3 55627951 55628011 -103971772 + A-rich Low_complexity Low_complexity 5 61 0 2 1009 257 137 0 38 chr3 55628064 55628117 -103971666 + CT-rich Low_complexity Low_complexity 2 52 0 2 1009 388 259 0 12 chr3 55628124 55628206 -103971577 - ID4 SINE ID -1 82 2 2 1009 321 242 87 11 chr3 55628225 55628317 -103971466 + L1MB8 LINE L1 6078 6176 -2 2 1009 275 301 33 58 chr3 55628388 55628508 -103971275 - PB1D10 SINE Alu 0 117 1 2 1009 323 326 70 27 chr3 55628794 55628980 -103970803 - MIR SINE MIR -47 215 22 2 1009 213 152 22 0 chr3 55629462 55629508 -103970275 + T-rich Low_complexity Low_complexity 6 52 0 2 1009 435 151 34 34 chr3 55629512 55629601 -103970182 - B1_Mur3 SINE Alu 0 149 61 2 1009 29 28 0 0 chr3 55630512 55630548 -103969235 + AT_rich Low_complexity Low_complexity 1 36 0 2 1009 485 294 32 0 chr3 55630625 55630751 -103969032 - B1F1 SINE Alu -9 140 11 2 1009 182 37 37 0 chr3 55630780 55630807 -103968976 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 2 1009 724 149 116 0 chr3 55630807 55630928 -103968855 - B1_Mur4 SINE Alu -13 137 3 2 1009 270 274 52 10 chr3 55631486 55631582 -103968201 + PB1D10 SINE Alu 2 101 -16 2 1009 237 220 20 0 chr3 55631587 55631637 -103968146 + G-rich Low_complexity Low_complexity 2 52 0 2 1009 212 100 25 0 chr3 55631732 55631772 -103968011 + (CAAAA)n Simple_repeat Simple_repeat 3 43 0 2 1009 278 143 0 0 chr3 55633165 55633221 -103966562 - Lx3A LINE L1 -3 6978 6923 2 1009 23 33 0 0 chr3 55633937 55633967 -103965816 + AT_rich Low_complexity Low_complexity 1 30 0 2 1009 205 293 0 0 chr3 55634961 55635019 -103964764 + (TA)n Simple_repeat Simple_repeat 2 59 0 2 1009 798 152 0 0 chr3 55635710 55635835 -103963948 - B1_Mur3 SINE Alu -13 136 12 2 1009 394 291 14 43 chr3 55635835 55635850 -103963933 - ID_B1 SINE B4 -13 211 76 2 1009 1585 38 0 0 chr3 55636839 55637025 -103962758 - B2_Mm1t SINE B2 -6 187 2 2 1009 231 36 0 0 chr3 55637565 55637593 -103962190 + (T)n Simple_repeat Simple_repeat 1 28 0 2 1009 271 317 19 38 chr3 55638310 55638415 -103961368 + PB1D10 SINE Alu 2 104 -13 2 1009 312 27 0 0 chr3 55638421 55638458 -103961325 + (CA)n Simple_repeat Simple_repeat 1 37 0 2 1009 397 303 122 72 chr3 55639489 55639606 -103960177 + L1M5 LINE L1 3844 3968 -2178 2 1009 754 11 0 0 chr3 55639606 55639700 -103960083 - L1_Mus2 LINE L1 -2 6564 6471 2 1009 397 303 122 72 chr3 55639700 55640066 -103959717 + L1M5 LINE L1 3969 4351 -1795 2 1009 284 318 26 22 chr3 55640077 55640305 -103959478 + L1M5 LINE L1 4369 4597 -1549 2 1009 1324 113 0 5 chr3 55640389 55640585 -103959198 + B2_Mm2 SINE B2 1 195 0 2 1009 706 254 17 28 chr3 55640653 55640831 -103958952 + B3A SINE B2 23 198 0 2 1009 513 264 60 75 chr3 55641261 55641462 -103958321 + B3A SINE B2 1 198 0 2 1009 225 0 0 0 chr3 55641721 55641746 -103958037 + (TC)n Simple_repeat Simple_repeat 2 26 0 2 1009 690 100 0 0 chr3 55641746 55641845 -103957938 + (TA)n Simple_repeat Simple_repeat 1 100 0 2 1009 230 292 15 0 chr3 55642411 55642476 -103957307 + (TG)n Simple_repeat Simple_repeat 1 66 0 2 1009 664 150 8 8 chr3 55642550 55642678 -103957105 + CT-rich Low_complexity Low_complexity 1 128 0 2 1009 1457 141 43 39 chr3 55642678 55642959 -103956824 - L1_Mus3 LINE L1 0 6638 6357 2 1009 5137 109 4 6 chr3 55642961 55643189 -103956594 + L1_Mm LINE L1 5070 5293 -590 2 1009 2450 47 0 0 chr3 55643189 55643487 -103956296 + L1Md_T LINE L1 6283 6580 -2 2 1009 5137 109 4 6 chr3 55643487 55644052 -103955731 + L1_Mm LINE L1 5294 5861 -22 2 1009 325 292 0 143 chr3 55644128 55644240 -103955543 - B4A SINE B4 -195 97 2 2 1009 1008 121 0 9 chr3 55645161 55645333 -103954450 - Lx2 LINE L1 -52 6945 6787 2 1009 1562 83 73 20 chr3 55646986 55647233 -103952550 - Lx3_Mus LINE L1 -1 7008 6749 2 1009 2479 67 9 0 chr3 55647234 55647565 -103952218 + L1_Mur1 LINE L1 5546 5879 -7 2 1009 2192 68 58 6 chr3 55647564 55647891 -103951892 + Lx3_Mus LINE L1 6396 6739 -270 2 1009 611 190 174 126 chr3 55648090 55648300 -103951483 - B3 SINE B2 -1 215 14 2 1009 204 40 0 0 chr3 55648537 55648562 -103951221 + (TG)n Simple_repeat Simple_repeat 1 25 0 2 1009 470 226 127 16 chr3 55648568 55648694 -103951089 - B1_Mur1 SINE Alu 0 149 10 2 1009 213 39 0 0 chr3 55648738 55648764 -103951019 + (A)n Simple_repeat Simple_repeat 1 26 0 2 1009 7693 128 9 14 chr3 55648889 55650178 -103949605 + L1_Mur2 LINE L1 4259 5541 -336 2 1009 2844 226 18 14 chr3 55650176 55650827 -103948956 + Lx5 LINE L1 6263 6916 -134 2 1009 21 0 0 0 chr3 55650886 55650907 -103948876 + AT_rich Low_complexity Low_complexity 1 21 0 2 1009 183 42 0 0 chr3 55650914 55650938 -103948845 + (CAA)n Simple_repeat Simple_repeat 2 25 0 2 1009 318 304 41 71 chr3 55653285 55653455 -103946328 + Lx9 LINE L1 6972 7136 -508 2 1009 235 309 56 24 chr3 55653487 55653613 -103946170 + Lx9 LINE L1 7225 7354 -290 2 1009 946 154 5 5 chr3 55653622 55653848 -103945935 + GA-rich Low_complexity Low_complexity 1 226 0 2 1009 238 226 223 58 chr3 55653878 55654066 -103945717 + Lx9 LINE L1 7388 7606 -38 2 1009 1416 123 73 8 chr3 55654066 55654312 -103945471 - L1_Mus3 LINE L1 -1 6637 6376 2 1009 1304 38 0 0 chr3 55654341 55654500 -103945283 - L1_Mus2 LINE L1 0 6566 6408 2 1009 4171 65 18 14 chr3 55654862 55655424 -103944359 + L1Md_F2 LINE L1 6018 6581 -1 2 1009 27 49 0 0 chr3 55655468 55655509 -103944274 + AT_rich Low_complexity Low_complexity 1 41 0 2 1009 321 315 130 20 chr3 55655875 55656021 -103943762 - RSINE1 SINE B4 0 165 4 2 1009 294 316 25 25 chr3 55656459 55656579 -103943204 + RMER15 LTR ERVL 420 539 -36 2 1009 194 282 51 13 chr3 55658364 55658443 -103941340 + MIR3 SINE MIR 110 191 -17 2 1009 266 213 33 0 chr3 55659076 55659137 -103940646 + (CATA)n Simple_repeat Simple_repeat 3 65 0 2 1009 694 94 0 0 chr3 55659145 55659241 -103940542 - BC1_Mm scRNA scRNA -55 97 2 2 1009 506 68 0 26 chr3 55660053 55660129 -103939654 + (TCCA)n Simple_repeat Simple_repeat 3 76 0 2 1009 298 313 122 0 chr3 55661780 55661927 -103937856 + B4A SINE B4 100 264 -28 2 1009 789 289 65 43 chr3 55662621 55662899 -103936884 + B4A SINE B4 9 292 0 2 1009 182 118 29 0 chr3 55662991 55663025 -103936758 + (AGGGGG)n Simple_repeat Simple_repeat 5 39 0 2 1009 3699 119 22 159 chr3 55663435 55664432 -103935351 - L1_Mur1 LINE L1 -1936 3950 3091 2 1009 4758 105 16 7 chr3 55664427 55665174 -103934609 + Lx3B LINE L1 5675 6428 -545 2 1009 690 150 0 0 chr3 55665174 55665294 -103934489 + (GA)n Simple_repeat Simple_repeat 1 120 0 2 1009 268 275 94 0 chr3 55665459 55665597 -103934186 - L1MB7 LINE L1 -211 5973 5823 2 1009 308 286 13 64 chr3 55665834 55665991 -103933792 - L1MB7 LINE L1 -718 5460 5312 2 1009 12801 109 12 1 chr3 55666056 55668471 -103931312 - L1_Mus3 LINE L1 -348 6290 3848 2 1009 197 260 13 0 chr3 55668655 55668732 -103931051 + (TA)n Simple_repeat Simple_repeat 2 79 0 2 1009 21 0 0 0 chr3 55668771 55668792 -103930991 + AT_rich Low_complexity Low_complexity 1 21 0 2 1009 424 258 22 50 chr3 55669419 55669558 -103930225 + RMER30 DNA MER1_type 15 149 -53 2 1009 29 47 0 0 chr3 55669786 55669829 -103929954 + AT_rich Low_complexity Low_complexity 1 43 0 2 1009 246 62 0 0 chr3 55669830 55669862 -103929921 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 2 1009 1076 106 6 0 chr3 55669862 55670023 -103929760 - B2_Mm2 SINE B2 -33 162 1 2 1009 364 289 142 48 chr3 55670425 55670734 -103929049 - L1MB7 LINE L1 -2230 3916 3579 2 1009 434 316 84 67 chr3 55671779 55672111 -103927672 + MLT1A1 LTR MaLR 31 408 0 2 1009 486 0 0 0 chr3 55672476 55672530 -103927253 + (TG)n Simple_repeat Simple_repeat 1 54 0 2 1009 191 213 127 32 chr3 55673294 55673357 -103926426 + MIRb SINE MIR 190 258 -10 2 1009 33 73 0 0 chr3 55673702 55673770 -103926013 + AT_rich Low_complexity Low_complexity 1 68 0 2 1009 3397 46 0 0 chr3 55673770 55674182 -103925601 - L1Md_F3 LINE L1 -19 6565 6154 2 1009 1267 56 0 12 chr3 55674182 55674344 -103925439 + L1Md_F3 LINE L1 6017 6176 -408 2 1009 563 269 162 26 chr3 55675556 55675747 -103924036 - ID_B1 SINE B4 -2 222 6 2 1009 1466 58 10 5 chr3 55675966 55676158 -103923625 - B2_Mm1t SINE B2 0 193 1 2 1009 451 243 93 29 chr3 55676469 55676609 -103923174 - B3 SINE B2 -59 157 9 2 1009 233 320 25 0 chr3 55678118 55678240 -103921543 + (TATG)n Simple_repeat Simple_repeat 4 128 0 2 1009 216 0 0 0 chr3 55679116 55679140 -103920643 + (A)n Simple_repeat Simple_repeat 1 24 0 2 1009 405 0 0 0 chr3 55679296 55679341 -103920442 + (CA)n Simple_repeat Simple_repeat 2 46 0 2 1009 4717 130 14 1 chr3 55680061 55680899 -103918884 + L1VL4 LINE L1 195 1045 -2514 2 1009 33125 65 3 0 chr3 55680900 55686100 -103913683 + L1Md_T LINE L1 371 5586 -297 2 1009 8394 34 0 0 chr3 55686100 55687096 -103912687 + L1Md_T LINE L1 5587 6582 0 2 1009 1514 129 23 15 chr3 55687098 55687358 -103912425 + L1_Mus4 LINE L1 6374 6635 -1 2 1009 532 266 110 18 chr3 55687433 55687777 -103912006 + MTD LTR MaLR 1 386 -35 2 1009 777 268 74 20 chr3 55688168 55688412 -103911371 - MER2 DNA MER2_type -2 343 87 2 1009 1368 246 77 92 chr3 55688416 55689016 -103910767 + L1_Mur3 LINE L1 2380 2970 -2910 2 1009 6977 71 9 1 chr3 55689071 55689988 -103909795 + L1Md_F2 LINE L1 5646 6569 -13 2 1009 1204 205 92 82 chr3 55690539 55690965 -103908818 + RMER10A LTR ERVL 7 436 -6 2 1009 231 167 0 0 chr3 55690970 55691012 -103908771 + CT-rich Low_complexity Low_complexity 3 44 0 2 1009 356 336 34 0 chr3 55691018 55691137 -103908646 - RSINE1 SINE B4 -40 125 3 2 1009 183 267 81 90 chr3 55693727 55693838 -103905945 + L2 LINE L2 1997 2106 -1313 2 1009 182 287 184 0 chr3 55696037 55696124 -103903659 - MIRb SINE MIR -36 232 130 2 1009 265 132 0 0 chr3 55696135 55696173 -103903610 + B1_Mus1 SINE Alu 5 42 -106 3 1009 1085 125 6 0 chr3 55698443 55698611 -103901172 - URR1A DNA MER1_type 0 226 58 3 1009 1165 158 456 3 chr3 55699562 55699950 -103899833 + L1_Mur2 LINE L1 5065 5628 -249 3 1009 1028 168 54 5 chr3 55699948 55700157 -103899626 + Lx4B LINE L1 6823 7040 -18 3 1009 297 75 0 0 chr3 55700157 55700197 -103899586 + (TGAA)n Simple_repeat Simple_repeat 3 42 0 3 1009 1028 168 54 5 chr3 55700197 55700208 -103899575 + Lx4B LINE L1 7041 7053 -5 3 1009 269 345 96 39 chr3 55700236 55700465 -103899318 + MER46C DNA MER2_type 88 329 -9 3 1009 540 45 0 0 chr3 55700470 55700537 -103899246 + (TCTA)n Simple_repeat Simple_repeat 4 70 0 3 1009 1117 75 0 0 chr3 55700537 55700683 -103899100 - B1_Mus1 SINE Alu -2 146 1 3 1009 22 0 0 0 chr3 55700684 55700706 -103899077 + AT_rich Low_complexity Low_complexity 1 22 0 3 1009 303 187 67 7 chr3 55705034 55705169 -103894614 + (TA)n Simple_repeat Simple_repeat 1 143 0 3 1009 24 32 0 0 chr3 55705244 55705275 -103894508 + AT_rich Low_complexity Low_complexity 1 31 0 3 1010 513 287 160 5 chr3 55705889 55706243 -103893540 - L1M2 LINE L1 -759 5121 4729 3 1010 501 317 40 43 chr3 55706249 55706598 -103893185 - L1_Rod LINE L1 -2295 3552 3205 3 1010 1577 337 25 46 chr3 55706676 55707540 -103892243 - Lx9 LINE L1 -26 7618 6773 3 1010 2847 260 76 39 chr3 55707533 55708587 -103891196 + L1_Rod LINE L1 4716 5808 -39 3 1010 479 308 97 6 chr3 55708604 55708919 -103890864 - L1M2 LINE L1 -2716 3164 2856 3 1010 3375 174 88 3 chr3 55708924 55709255 -103890528 + RMER6D LTR ERVK 6 358 -362 3 1010 194 81 27 0 chr3 55709255 55709292 -103890491 + (TG)n Simple_repeat Simple_repeat 2 39 0 3 1010 3375 174 88 3 chr3 55709292 55709619 -103890164 + RMER6D LTR ERVK 359 720 0 3 1010 424 296 99 10 chr3 55709620 55709821 -103889962 - L1M2 LINE L1 -3283 2860 2642 3 1010 1040 317 109 35 chr3 55709813 55710943 -103888840 - L1_Rod LINE L1 -3299 2548 1335 3 1010 243 0 0 0 chr3 55712402 55712429 -103887354 + (T)n Simple_repeat Simple_repeat 1 27 0 3 1010 23 78 0 0 chr3 55712550 55712601 -103887182 + AT_rich Low_complexity Low_complexity 1 51 0 3 1010 337 299 18 18 chr3 55712658 55712828 -103886955 - L1M2 LINE L1 -3106 3037 2868 3 1010 3780 194 59 47 chr3 55712830 55713591 -103886192 + RMER19B LTR ERVK 1 770 -132 3 1010 7717 47 19 1 chr3 55713592 55715154 -103884629 - L1Md_F2 LINE L1 0 6582 4987 3 1010 683 180 70 0 chr3 55715154 55715282 -103884501 + RMER19B LTR ERVK 759 895 -7 3 1010 270 244 22 0 chr3 55715367 55715457 -103884326 - L1M2 LINE L1 -3378 2765 2674 3 1010 195 139 0 0 chr3 55715506 55715542 -103884241 + (TG)n Simple_repeat Simple_repeat 1 36 0 3 1010 648 217 7 0 chr3 55715743 55715881 -103883902 - B1_Mus2 SINE Alu -5 142 4 3 1010 348 294 74 4 chr3 55715889 55716105 -103883678 - L1M3 LINE L1 -1488 4658 4421 3 1010 379 237 173 16 chr3 55716362 55716536 -103883247 - L1M3 LINE L1 -442 5736 5542 3 1010 262 297 31 0 chr3 55718052 55718116 -103881667 + PB1D7 SINE Alu 7 72 -48 3 1010 410 301 170 44 chr3 55718176 55718927 -103880856 - L1M3 LINE L1 -1363 4777 3932 3 1010 272 167 14 0 chr3 55719615 55719687 -103880096 + T-rich Low_complexity Low_complexity 3 75 0 3 1010 645 288 209 14 chr3 55719692 55719970 -103879813 - MTC LTR MaLR -52 369 38 3 1010 305 145 0 16 chr3 55720004 55720067 -103879716 + GA-rich Low_complexity Low_complexity 3 64 0 3 1010 694 130 53 0 chr3 55720068 55720199 -103879584 - MusHAL1 LINE L1 -726 1986 1849 3 1010 33979 25 0 0 chr3 55720189 55726410 -103873373 - L1Md_T LINE L1 0 6585 268 3 1010 12747 91 7 20 chr3 55726410 55729172 -103870611 - L1VL4 LINE L1 -825 2734 13 3 1010 322 315 106 37 chr3 55729246 55729434 -103870349 - L1ME3B LINE L1 -98 6142 5942 3 1010 355 320 100 82 chr3 55730036 55730598 -103869185 - L1MC4 LINE L1 -4690 1525 954 3 1010 223 151 0 54 chr3 55730985 55731041 -103868742 + A-rich Low_complexity Low_complexity 4 56 0 3 1010 620 320 54 18 chr3 55731649 55731926 -103867857 + B4A SINE B4 6 292 0 3 1010 387 0 0 0 chr3 55732793 55732836 -103866947 + (CA)n Simple_repeat Simple_repeat 2 44 0 3 1010 197 132 0 26 chr3 55732847 55732886 -103866897 + C-rich Low_complexity Low_complexity 3 40 0 3 1010 291 161 0 0 chr3 55732993 55733049 -103866734 + (TG)n Simple_repeat Simple_repeat 2 57 0 3 1010 423 316 87 12 chr3 55733364 55733537 -103866246 - B4A SINE B4 -106 186 1 3 1010 238 266 16 0 chr3 55734293 55734357 -103865426 + ID4 SINE ID 4 68 -15 3 1010 248 278 40 107 chr3 55734923 55735072 -103864711 - Charlie18a DNA MER1_type -52 290 152 3 1010 195 42 0 0 chr3 55735358 55735382 -103864401 + (CAAAAA)n Simple_repeat Simple_repeat 2 25 0 3 1010 354 349 14 7 chr3 55735833 55735980 -103863803 + Lx7 LINE L1 6530 6677 -1019 3 1010 1153 56 0 0 chr3 55736458 55736601 -103863182 - B1_Mus2 SINE Alu -1 146 4 3 1010 21 0 0 0 chr3 55738629 55738650 -103861133 + AT_rich Low_complexity Low_complexity 1 21 0 3 1010 186 263 263 0 chr3 55739527 55739641 -103860142 - MER5A DNA MER1_type -27 162 19 3 1010 201 39 0 0 chr3 55740564 55740590 -103859193 + (CCAA)n Simple_repeat Simple_repeat 1 26 0 3 1010 743 193 14 14 chr3 55741248 55741395 -103858388 - B1_Mur2 SINE Alu 0 149 3 3 1010 22 35 0 0 chr3 55741432 55741461 -103858322 + AT_rich Low_complexity Low_complexity 1 29 0 3 1010 5061 68 1 1 chr3 55741595 55742246 -103857537 + L1_Mus1 LINE L1 5917 6567 0 3 1010 1084 96 0 0 chr3 55742291 55742432 -103857351 + B1_Mus1 SINE Alu 1 141 -7 3 1010 351 0 0 0 chr3 55742432 55742471 -103857312 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 3 1010 24 0 0 0 chr3 55743249 55743273 -103856510 + AT_rich Low_complexity Low_complexity 1 24 0 3 1010 411 38 0 0 chr3 55743981 55744034 -103855749 + (TA)n Simple_repeat Simple_repeat 2 54 0 3 1010 2838 123 7 0 chr3 55744034 55744456 -103855327 - L1_Mus3 LINE L1 -21 6617 6193 3 1010 7263 109 2 22 chr3 55744456 55745571 -103854212 + L1_Mm LINE L1 4012 5103 -780 3 1010 387 358 63 47 chr3 55745869 55746168 -103853615 + L1MCc LINE L1 152 455 -5968 3 1010 892 261 96 35 chr3 55747149 55747547 -103852236 + L1MA5 LINE L1 5689 6110 -190 3 1010 303 28 0 0 chr3 55747576 55747612 -103852171 + (CA)n Simple_repeat Simple_repeat 1 36 0 3 1010 488 350 69 76 chr3 55747733 55748181 -103851602 + MLT1E2 LTR MaLR 22 466 -161 3 1010 1863 109 10 14 chr3 55748450 55748739 -103851044 - Lx2 LINE L1 -1 6996 6709 3 1010 7997 124 37 77 chr3 55750482 55751918 -103847865 - Lx2 LINE L1 -28 6969 5591 3 1010 6169 152 43 1 chr3 55751919 55752999 -103846784 + Lx2 LINE L1 4461 5586 -297 3 1010 54 16 0 0 chr3 55753062 55753123 -103846660 + AT_rich Low_complexity Low_complexity 1 61 0 3 1010 1202 61 0 0 chr3 55753496 55753644 -103846139 + B1_Mus1 SINE Alu 1 148 0 3 1010 615 298 104 24 chr3 55754164 55754624 -103845159 + L1ME1 LINE L1 5421 5917 -262 3 1010 3524 131 11 26 chr3 55754882 55755492 -103844291 + Lx3C LINE L1 6374 6974 -2 3 1010 189 107 0 0 chr3 55756094 55756122 -103843661 + (GAAA)n Simple_repeat Simple_repeat 4 31 0 3 1010 36 53 0 0 chr3 55757092 55757149 -103842634 + AT_rich Low_complexity Low_complexity 1 57 0 3 1010 22 35 0 0 chr3 55758046 55758075 -103841708 + AT_rich Low_complexity Low_complexity 1 29 0 3 1010 460 196 6 6 chr3 55758456 55758636 -103841147 + GA-rich Low_complexity Low_complexity 1 180 0 3 1010 433 289 51 41 chr3 55759765 55759833 -103839950 + B4 SINE B4 13 64 -160 3 1010 221 324 57 122 chr3 55759833 55759956 -103839827 + PB1 SINE Alu 1 115 -12 3 1010 198 103 0 0 chr3 55760035 55760064 -103839719 + (TG)n Simple_repeat Simple_repeat 2 30 0 3 1010 189 0 0 0 chr3 55760073 55760094 -103839689 + (CA)n Simple_repeat Simple_repeat 2 22 0 3 1010 550 311 40 40 chr3 55761664 55761838 -103837945 + B4A SINE B4 15 188 -104 3 1010 516 59 0 0 chr3 55761851 55761919 -103837864 + (CA)n Simple_repeat Simple_repeat 1 68 0 3 1010 206 310 92 15 chr3 55762246 55762377 -103837406 + MIRc SINE MIR 50 190 -78 3 1010 6712 102 47 18 chr3 55762566 55763636 -103836147 - Lx LINE L1 -6 6648 5555 3 1010 698 301 84 19 chr3 55764417 55764696 -103835087 + L1_Mur3 LINE L1 4077 4360 -1520 3 1010 186 43 0 0 chr3 55764696 55764719 -103835064 + (CAA)n Simple_repeat Simple_repeat 1 23 0 3 1010 698 301 84 19 chr3 55764719 55764853 -103834930 + L1_Mur3 LINE L1 4361 4517 -1363 3 1010 267 253 38 0 chr3 55764862 55764941 -103834842 + L1M3 LINE L1 5132 5213 -927 3 1010 1700 175 148 16 chr3 55764942 55765314 -103834469 + MTC LTR MaLR 1 421 0 3 1010 271 193 0 81 chr3 55765358 55765420 -103834363 + ORR1C1 LTR MaLR 310 366 -12 3 1010 1249 176 21 16 chr3 55765429 55765671 -103834112 + ORR1C1-int LTR MaLR 2 244 -1014 3 1010 1322 284 104 25 chr3 55765673 55766309 -103833474 + L1_Rod LINE L1 5149 5834 -13 3 1010 1939 311 55 3 chr3 55766363 55767034 -103832749 + Lx8 LINE L1 6336 7041 -432 3 1010 24 32 0 0 chr3 55767963 55767994 -103831789 + AT_rich Low_complexity Low_complexity 1 31 0 3 1010 25 90 0 0 chr3 55768505 55768572 -103831211 + AT_rich Low_complexity Low_complexity 1 67 0 3 1010 21 36 0 0 chr3 55772814 55772842 -103826941 + AT_rich Low_complexity Low_complexity 1 28 0 3 1010 1818 152 3 3 chr3 55772986 55773303 -103826480 + L1_Mm LINE L1 4751 5067 -816 3 1010 562 318 117 21 chr3 55773553 55774076 -103825707 - L1M4 LINE L1 -5115 1427 855 3 1010 213 259 0 0 chr3 55774297 55774351 -103825432 + (CTG)n Simple_repeat Simple_repeat 3 56 0 3 1010 207 0 0 0 chr3 55774849 55774872 -103824911 + (T)n Simple_repeat Simple_repeat 1 23 0 3 1010 861 157 38 6 chr3 55774876 55775036 -103824747 - MTD LTR MaLR -59 360 196 3 1010 243 0 0 0 chr3 55775058 55775085 -103824698 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 3 1010 869 52 9 0 chr3 55775096 55775211 -103824572 - B1_Mm SINE Alu 0 147 32 3 1010 31183 72 13 12 chr3 55775235 55781541 -103818242 - L1Md_F3 LINE L1 -14 6570 290 3 1010 194 368 0 50 chr3 55782167 55782247 -103817536 + MIR SINE MIR 37 112 -150 3 1010 255 378 60 26 chr3 55782304 55782606 -103817177 + L2 LINE L2 2499 2810 -609 4 1010 384 365 116 60 chr3 55782648 55782983 -103816800 + MLT1D LTR MaLR 41 394 -111 4 1010 3558 56 19 21 chr3 55783025 55783497 -103816286 - L1_Mus1 LINE L1 -4 6563 6093 4 1010 21 0 0 0 chr3 55783892 55783913 -103815870 + AT_rich Low_complexity Low_complexity 1 21 0 4 1010 2313 187 28 39 chr3 55784192 55784686 -103815097 + RLTR16 LTR ERVK 5 493 -12 4 1010 638 281 43 24 chr3 55785236 55785444 -103814339 - B3 SINE B2 -3 213 2 4 1010 292 233 58 11 chr3 55785959 55786046 -103813737 - Charlie10 DNA MER1_type -1697 1125 1035 4 1010 7059 76 58 8 chr3 55786047 55787125 -103812658 - L1_Mus4 LINE L1 -4 6632 5505 4 1010 22 56 0 0 chr3 55787259 55787295 -103812488 + AT_rich Low_complexity Low_complexity 1 36 0 4 1010 285 257 13 13 chr3 55788535 55788610 -103811173 + RMER4A LTR ERVK 26 100 -366 4 1010 527 315 33 17 chr3 55789826 55790007 -103809776 + B3A SINE B2 9 192 -6 4 1010 283 267 85 43 chr3 55790046 55790140 -103809643 + RSINE1 SINE B4 55 152 -13 4 1010 338 0 24 0 chr3 55790155 55790197 -103809586 + (CA)n Simple_repeat Simple_repeat 2 44 0 4 1010 520 301 0 89 chr3 55790962 55791141 -103808642 + RSINE1 SINE B4 3 165 0 4 1010 22 35 0 0 chr3 55791141 55791170 -103808613 + AT_rich Low_complexity Low_complexity 1 29 0 4 1010 522 280 15 29 chr3 55791510 55791646 -103808137 - B4A SINE B4 -157 135 2 4 1010 212 352 0 14 chr3 55795430 55795502 -103804281 + B3A SINE B2 10 80 -118 4 1010 289 236 80 49 chr3 55795530 55795648 -103804135 + B4A SINE B4 75 274 -18 4 1010 26 50 0 0 chr3 55797898 55797938 -103801845 + AT_rich Low_complexity Low_complexity 1 40 0 4 1010 35 83 0 0 chr3 55798032 55798116 -103801667 + AT_rich Low_complexity Low_complexity 1 84 0 4 1010 21 0 0 0 chr3 55798418 55798439 -103801344 + AT_rich Low_complexity Low_complexity 1 21 0 4 1010 24 0 0 0 chr3 55798690 55798714 -103801069 + AT_rich Low_complexity Low_complexity 1 24 0 4 1010 681 13 0 0 chr3 55799302 55799380 -103800403 + (TTCC)n Simple_repeat Simple_repeat 2 79 0 4 1010 448 267 22 58 chr3 55799424 55799563 -103800220 - B1_Mur1 SINE Alu -14 135 2 4 1010 1198 61 0 0 chr3 55800505 55800653 -103799130 - B1_Mus1 SINE Alu 0 148 1 4 1010 492 100 0 0 chr3 55800990 55801070 -103798713 + (TATG)n Simple_repeat Simple_repeat 2 81 0 4 1010 229 51 51 0 chr3 55801271 55801310 -103798473 + (CAA)n Simple_repeat Simple_repeat 2 42 0 4 1010 218 217 0 104 chr3 55801852 55801929 -103797854 - B1_Mus1 SINE Alu -72 76 8 4 1010 226 321 12 36 chr3 55803868 55803952 -103795831 - ID4 SINE ID 0 83 2 4 1010 216 0 0 0 chr3 55804762 55804786 -103794997 + (TG)n Simple_repeat Simple_repeat 2 25 0 4 1010 235 175 29 87 chr3 55804837 55804906 -103794877 - ID_B1 SINE B4 -5 219 155 4 1010 214 319 0 14 chr3 55805736 55805809 -103793974 + GA-rich Low_complexity Low_complexity 3 74 0 4 1010 873 261 0 55 chr3 55806341 55806560 -103793223 + B3 SINE B2 3 209 -7 4 1010 350 290 6 119 chr3 55808158 55808334 -103791449 + RMER12 LTR ERVK 696 851 -471 4 1010 311 318 82 0 chr3 55810249 55810359 -103789424 + MER58B DNA MER1_type 222 340 -1 4 1010 2232 127 61 3 chr3 55810651 55811014 -103788769 + ORR1C2 LTR MaLR 1 384 0 4 1010 438 248 53 60 chr3 55811038 55811171 -103788612 + B1_Mur1 SINE Alu 14 145 -4 4 1010 338 276 126 70 chr3 55811185 55811384 -103788399 - B4A SINE B4 -31 261 52 4 1010 552 283 13 19 chr3 55811586 55811741 -103788042 + RSINE1 SINE B4 11 164 -1 4 1010 291 28 0 0 chr3 55811836 55811872 -103787911 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 4 1010 731 69 10 19 chr3 55811872 55811976 -103787807 - B1_Mm SINE Alu -9 138 36 4 1010 477 0 0 0 chr3 55812894 55812947 -103786836 + (TG)n Simple_repeat Simple_repeat 2 54 0 4 1010 236 330 113 0 chr3 55814316 55814413 -103785370 - Lx8 LINE L1 -364 7109 7002 4 1010 204 125 0 0 chr3 55814428 55814460 -103785323 + (GAA)n Simple_repeat Simple_repeat 2 33 0 4 1010 1331 318 88 7 chr3 55815975 55816533 -103783250 + Lx8 LINE L1 6594 7196 -277 4 1010 1485 215 49 21 chr3 55816540 55816868 -103782915 + ORR1D1 LTR MaLR 2 338 -36 4 1010 3545 83 10 2 chr3 55818293 55818788 -103780995 - L1_Mus3 LINE L1 0 6638 6140 4 1010 1162 89 36 16 chr3 55818826 55819020 -103780763 - L1_Mus3 LINE L1 -2 6636 6439 4 1010 26 0 0 0 chr3 55819673 55819699 -103780084 + AT_rich Low_complexity Low_complexity 1 26 0 4 1010 345 311 190 41 chr3 55820217 55820464 -103779319 - Cheshire DNA MER1_type -1830 590 304 4 1010 1100 66 0 0 chr3 55820464 55820600 -103779183 - B1_Mus1 SINE Alu -11 137 2 4 1010 345 311 190 41 chr3 55820600 55820788 -103778995 - Cheshire DNA MER1_type -2117 303 90 4 1010 464 0 0 18 chr3 55820788 55820845 -103778938 + (TAA)n Simple_repeat Simple_repeat 2 57 0 4 1010 3044 40 0 13 chr3 55820927 55821310 -103778473 + L1Md_F3 LINE L1 6207 6584 0 4 1010 1103 71 0 0 chr3 55821325 55821466 -103778317 + B1_Mus2 SINE Alu 1 141 -6 4 1010 779 186 78 31 chr3 55821566 55821887 -103777896 + ORR1C2 LTR MaLR 19 384 0 4 1010 180 97 0 0 chr3 55821911 55821942 -103777841 + (T)n Simple_repeat Simple_repeat 1 31 0 4 1010 1391 209 136 16 chr3 55822248 55822448 -103777335 - MTD LTR MaLR 0 419 188 4 1010 2717 150 104 22 chr3 55822448 55822987 -103776796 - RMER4B LTR ERVK -2 583 1 4 1010 1391 209 136 16 chr3 55822987 55823160 -103776623 - MTD LTR MaLR -232 187 1 4 1010 357 314 39 0 chr3 55823951 55824053 -103775730 + ORR1E LTR MaLR 1 106 -253 4 1010 434 247 52 4 chr3 55824057 55824181 -103775602 - B4A SINE B4 -151 141 3 4 1010 21 0 0 0 chr3 55824185 55824206 -103775577 + AT_rich Low_complexity Low_complexity 1 21 0 4 1010 24 0 0 0 chr3 55824460 55824484 -103775299 + AT_rich Low_complexity Low_complexity 1 24 0 4 1010 39732 12 0 0 chr3 55825019 55830314 -103769469 - L1Md_A LINE L1 0 6582 1289 4 1010 999 101 0 51 chr3 55830911 55831067 -103768716 + B1_Mus1 SINE Alu 1 148 0 4 1010 304 78 20 82 chr3 55831067 55831165 -103768618 + A-rich Low_complexity Low_complexity 4 95 0 4 1010 655 277 36 0 chr3 55831804 55831999 -103767784 - B3 SINE B2 -6 210 9 4 1010 21 36 0 0 chr3 55832526 55832554 -103767229 + AT_rich Low_complexity Low_complexity 1 28 0 4 1010 366 123 0 0 chr3 55832615 55832672 -103767111 + (TG)n Simple_repeat Simple_repeat 2 58 0 4 1010 1107 75 0 7 chr3 55834401 55834549 -103765234 + B1_Mm SINE Alu 1 147 0 4 1010 244 299 24 12 chr3 55834595 55834695 -103765088 + ID4 SINE ID 3 103 -49 4 1010 23 54 0 0 chr3 55835519 55835556 -103764227 + AT_rich Low_complexity Low_complexity 1 37 0 4 1010 259 234 0 138 chr3 55835815 55835909 -103763874 + MT2B LTR ERVL 156 236 -365 4 1010 409 270 26 43 chr3 55835825 55835941 -103763842 + PB1D9 SINE Alu 2 115 -5 4 1011 777 159 250 0 chr3 55837765 55837941 -103761842 - URR1B DNA MER1_type -1 224 5 4 1011 247 324 174 22 chr3 55838147 55838371 -103761412 + L1MC4 LINE L1 6664 6921 -961 4 1011 254 206 13 52 chr3 55838629 55838706 -103761077 + L1MC4 LINE L1 7025 7098 -944 4 1011 198 0 0 0 chr3 55838976 55838998 -103760785 + (CAAAA)n Simple_repeat Simple_repeat 3 24 0 4 1011 1117 110 0 0 chr3 55839327 55839482 -103760301 + B2_Mm2 SINE B2 1 155 -40 4 1011 252 0 0 0 chr3 55839482 55839510 -103760273 + (TAAA)n Simple_repeat Simple_repeat 4 31 0 4 1011 2107 74 77 12 chr3 55841381 55841708 -103758075 + L1_Mus3 LINE L1 6286 6633 -5 4 1011 276 30 0 0 chr3 55841996 55842029 -103757754 + (GCCTG)n Simple_repeat Simple_repeat 3 35 0 4 1011 303 260 0 40 chr3 55842292 55842368 -103757415 + MER33 DNA MER1_type 14 86 -238 4 1011 405 310 144 87 chr3 55843320 55844012 -103755771 + L1M5 LINE L1 3828 4559 -1587 4 1011 258 333 54 0 chr3 55844279 55844372 -103755411 - Tigger5 DNA MER2_type -17 2389 2292 4 1011 322 317 0 0 chr3 55844476 55844558 -103755225 - PB1D10 SINE Alu -4 113 32 4 1011 240 122 0 0 chr3 55845924 55845965 -103753818 + (TTTA)n Simple_repeat Simple_repeat 1 41 0 4 1011 34 0 0 0 chr3 55847903 55847937 -103751846 + AT_rich Low_complexity Low_complexity 1 34 0 4 1011 21 0 0 0 chr3 55848070 55848091 -103751692 + AT_rich Low_complexity Low_complexity 1 21 0 4 1011 264 294 10 98 chr3 55848313 55848415 -103751368 + PB1 SINE Alu 27 119 -8 4 1011 238 329 26 0 chr3 55848434 55848510 -103751273 + ID4_ SINE ID 5 82 -1 4 1011 617 178 116 0 chr3 55849074 55849203 -103750580 + B3 SINE B2 5 148 -68 4 1011 476 293 125 55 chr3 55849281 55849721 -103750062 - L1ME1 LINE L1 -214 5965 5495 4 1011 509 312 93 31 chr3 55849969 55850293 -103749490 - Lx8 LINE L1 -740 6733 6390 4 1011 823 267 92 18 chr3 55850351 55850438 -103749345 + Lx7 LINE L1 5516 5601 -279 4 1011 1643 213 44 0 chr3 55850438 55850800 -103748983 + ORR1C1 LTR MaLR 1 378 0 4 1011 993 244 22 11 chr3 55850800 55851073 -103748710 + Lx7 LINE L1 5629 5904 -1792 4 1011 294 125 44 59 chr3 55851081 55851149 -103748634 + Lx7 LINE L1 5706 5772 -1924 4 1011 298 273 174 9 chr3 55852481 55852699 -103747084 - L1MA6 LINE L1 -21 6279 6026 4 1011 6238 59 23 20 chr3 55853145 55853998 -103745785 - L1_Mur1 LINE L1 -751 5135 4280 4 1011 8649 95 12 19 chr3 55853998 55855281 -103744502 + Lx3_Mus LINE L1 5727 7000 -9 4 1011 1065 67 0 0 chr3 55856641 55856775 -103743008 + B1_Mus2 SINE Alu 1 134 -13 4 1011 594 0 0 0 chr3 55856776 55856842 -103742941 + (GA)n Simple_repeat Simple_repeat 2 67 0 4 1011 1246 26 0 0 chr3 55859611 55859764 -103740019 + L1Md_A LINE L1 6430 6582 0 4 1011 28 29 0 0 chr3 55860268 55860303 -103739480 + AT_rich Low_complexity Low_complexity 1 35 0 5 1011 23 33 0 0 chr3 55860412 55860442 -103739341 + AT_rich Low_complexity Low_complexity 1 30 0 5 1011 22 0 0 0 chr3 55860628 55860650 -103739133 + AT_rich Low_complexity Low_complexity 1 22 0 5 1011 225 65 0 0 chr3 55860670 55860701 -103739082 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 5 1011 732 80 0 0 chr3 55861637 55861737 -103738046 + (TA)n Simple_repeat Simple_repeat 2 101 0 5 1011 233 0 0 59 chr3 55863077 55863111 -103736672 + (TTTTTG)n Simple_repeat Simple_repeat 5 36 0 5 1011 599 123 8 116 chr3 55863111 55863125 -103736658 - B1_Mus2 SINE Alu 0 147 139 5 1011 467 60 15 0 chr3 55863125 55863192 -103736591 + (GTTTG)n Simple_repeat Simple_repeat 2 69 0 5 1011 599 123 8 116 chr3 55863192 55863306 -103736477 - B1_Mus2 SINE Alu -9 138 33 5 1011 24 0 0 0 chr3 55863599 55863623 -103736160 + AT_rich Low_complexity Low_complexity 1 24 0 5 1011 22 35 0 0 chr3 55863664 55863693 -103736090 + AT_rich Low_complexity Low_complexity 1 29 0 5 1011 4388 204 58 25 chr3 55863724 55865653 -103734130 + Lx6 LINE L1 5164 7256 -204 5 1011 24 0 0 0 chr3 55865699 55865723 -103734060 + AT_rich Low_complexity Low_complexity 1 24 0 5 1011 21 57 0 0 chr3 55865849 55865884 -103733899 + AT_rich Low_complexity Low_complexity 1 35 0 5 1011 21 0 0 0 chr3 55866623 55866644 -103733139 + AT_rich Low_complexity Low_complexity 1 21 0 5 1011 22 0 0 0 chr3 55867106 55867128 -103732655 + AT_rich Low_complexity Low_complexity 1 22 0 5 1011 349 294 27 9 chr3 55867697 55867807 -103731976 - PB1D7 SINE Alu -6 114 3 5 1011 315 0 0 0 chr3 55869102 55869137 -103730646 + (CA)n Simple_repeat Simple_repeat 2 36 0 5 1011 1017 50 50 0 chr3 55869614 55869753 -103730030 + L1_Mus1 LINE L1 6422 6567 0 5 1011 270 270 26 26 chr3 55869818 55869894 -103729889 - Tigger7 DNA MER2_type -2406 85 10 5 1011 337 250 81 0 chr3 55869901 55870025 -103729758 + L1MA4 LINE L1 3411 3544 -3790 5 1011 446 230 96 25 chr3 55870052 55870295 -103729488 + L1MA4 LINE L1 6045 6319 -841 5 1011 582 275 206 51 chr3 55870618 55870929 -103728854 - ORR1E LTR MaLR 0 359 1 5 1011 237 197 0 0 chr3 55871203 55871269 -103728514 + (CA)n Simple_repeat Simple_repeat 2 67 0 5 1011 771 276 61 19 chr3 55872693 55873055 -103726728 + L1MA4 LINE L1 6414 6790 -370 5 1011 35073 46 1 3 chr3 55873570 55878872 -103720911 + L1Md_T LINE L1 203 5589 -297 5 1011 8130 37 17 0 chr3 55878872 55879850 -103719933 + L1Md_T LINE L1 5590 6584 -1 5 1011 774 257 34 0 chr3 55880426 55880601 -103719182 + B3 SINE B2 3 183 -33 5 1011 203 161 18 0 chr3 55880601 55880657 -103719126 + GA-rich Low_complexity Low_complexity 2 58 0 5 1011 5789 228 72 13 chr3 55880797 55882339 -103717444 + Lx6 LINE L1 5800 7696 0 5 1011 844 156 7 0 chr3 55882749 55882890 -103716893 - B1_Mus1 SINE Alu -2 146 5 5 1011 603 241 55 0 chr3 55883271 55883416 -103716367 - B2_Mm2 SINE B2 -28 167 15 5 1011 180 0 0 0 chr3 55884909 55884929 -103714854 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 5 1011 279 0 0 0 chr3 55885180 55885211 -103714572 + (TTG)n Simple_repeat Simple_repeat 3 33 0 5 1011 677 157 86 8 chr3 55885811 55885939 -103713844 - B1_Mm SINE Alu 0 147 10 5 1011 323 288 65 97 chr3 55885845 55885999 -103713784 - MT2B LTR ERVL -344 257 109 5 1011 49 43 0 0 chr3 55886126 55886196 -103713587 + AT_rich Low_complexity Low_complexity 1 70 0 5 1011 25 65 0 0 chr3 55887376 55887422 -103712361 + AT_rich Low_complexity Low_complexity 1 46 0 5 1011 939 75 97 0 chr3 55887660 55887794 -103711989 + B1_Mm SINE Alu 1 147 0 5 1011 691 188 279 0 chr3 55887859 55888024 -103711759 - B3 SINE B2 -5 211 1 5 1011 26 0 0 0 chr3 55889484 55889510 -103710273 + AT_rich Low_complexity Low_complexity 1 26 0 5 1011 22 35 0 0 chr3 55889969 55889998 -103709785 + AT_rich Low_complexity Low_complexity 1 29 0 5 1011 424 265 20 0 chr3 55890614 55890716 -103709067 + PB1D10 SINE Alu 6 109 -8 5 1011 240 86 0 0 chr3 55890724 55890759 -103709024 + (CAG)n Simple_repeat Simple_repeat 1 35 0 5 1011 299 335 28 81 chr3 55891686 55891933 -103707850 - MIR SINE MIR -5 257 24 5 1011 210 297 16 0 chr3 55892129 55892193 -103707590 + (TA)n Simple_repeat Simple_repeat 2 66 0 5 1011 24 0 0 0 chr3 55892302 55892326 -103707457 + AT_rich Low_complexity Low_complexity 1 24 0 5 1011 21 57 0 0 chr3 55892570 55892605 -103707178 + AT_rich Low_complexity Low_complexity 1 35 0 5 1011 32 0 0 0 chr3 55893527 55893559 -103706224 + AT_rich Low_complexity Low_complexity 1 32 0 5 1011 971 224 185 29 chr3 55894026 55894334 -103705449 + ORR1D1 LTR MaLR 6 361 -13 5 1011 867 120 86 2 chr3 55895791 55895952 -103703831 + ORR1C1 LTR MaLR 1 187 -207 5 1011 395 278 0 0 chr3 55895953 55896043 -103703740 + Lx5 LINE L1 6866 6955 -95 5 1011 1420 163 43 43 chr3 55896043 55896105 -103703678 + ORR1C1 LTR MaLR 78 129 -249 5 1011 234 0 0 0 chr3 55896105 55896131 -103703652 + (TTAA)n Simple_repeat Simple_repeat 4 29 0 5 1011 1420 163 43 43 chr3 55896131 55896369 -103703414 + ORR1C1 LTR MaLR 130 378 0 5 1011 22 56 0 0 chr3 55898822 55898858 -103700925 + AT_rich Low_complexity Low_complexity 1 36 0 5 1011 581 354 51 68 chr3 55899277 55899571 -103700212 + MLT1A LTR MaLR 1 289 -76 5 1011 1718 192 38 103 chr3 55900088 55900536 -103699247 - MTC LTR MaLR 0 421 3 5 1011 297 0 0 0 chr3 55900706 55900739 -103699044 + (CA)n Simple_repeat Simple_repeat 2 34 0 5 1011 294 183 0 0 chr3 55901522 55901593 -103698190 + A-rich Low_complexity Low_complexity 1 71 0 5 1011 230 368 26 26 chr3 55901658 55901736 -103698047 + ID4_ SINE ID 3 80 -3 5 1011 186 133 0 0 chr3 55901743 55901773 -103698010 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 5 1011 1910 174 70 13 chr3 55902084 55902457 -103697326 + ORR1B1 LTR MaLR 1 394 0 5 1011 854 89 111 0 chr3 55902522 55902657 -103697126 - B2_Mm2 SINE B2 -9 186 37 5 1011 2209 146 63 0 chr3 55902797 55903160 -103696623 + ORR1B1 LTR MaLR 1 386 -8 5 1011 541 259 172 17 chr3 55903231 55903522 -103696261 - Lx8 LINE L1 -7 7466 7131 5 1011 1408 302 88 75 chr3 55903521 55903859 -103695924 - L1_Mur3 LINE L1 -107 5773 5417 5 1011 1698 215 81 83 chr3 55903859 55904413 -103695370 + RLTR31_Mur LTR ERVK 1 553 0 5 1011 1408 302 88 75 chr3 55904413 55905346 -103694437 - L1_Mur3 LINE L1 -464 5416 4485 5 1011 216 0 0 0 chr3 55905568 55905592 -103694191 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 5 1011 5216 31 0 0 chr3 55905595 55906203 -103693580 - L1Md_T LINE L1 -13 6569 5962 5 1011 336 279 59 9 chr3 55906220 55906396 -103693387 - L1_Mur3 LINE L1 -1607 4273 4089 5 1011 373 234 91 40 chr3 55906448 55906612 -103693171 + L1_Mur3 LINE L1 5480 5653 -227 5 1011 23 0 0 0 chr3 55906667 55906690 -103693093 + AT_rich Low_complexity Low_complexity 1 23 0 5 1011 1035 295 77 16 chr3 55907233 55907535 -103692248 - MTE2b LTR MaLR 0 379 59 5 1011 2091 251 94 14 chr3 55907535 55908098 -103691685 - MTE-int LTR MaLR -2 1578 971 5 1011 400 350 67 0 chr3 55908100 55908220 -103691563 - RSINE1 SINE B4 -30 135 8 5 1011 228 266 25 25 chr3 55908320 55908401 -103691382 - L1M2 LINE L1 -519 5778 5698 5 1011 431 268 37 83 chr3 55908380 55908659 -103691124 + L1MA4A LINE L1 5548 5828 -475 5 1011 417 306 152 9 chr3 55908659 55908870 -103690913 + B4A SINE B4 1 241 -51 5 1011 273 29 0 0 chr3 55908950 55908984 -103690799 + (CA)n Simple_repeat Simple_repeat 2 35 0 5 1011 301 292 0 0 chr3 55909203 55909299 -103690484 + L1MD LINE L1 5204 5299 -847 5 1011 819 275 41 41 chr3 55910272 55910617 -103689166 + RLTR15 LTR ERVK 1 345 -14 5 1011 182 306 120 51 chr3 55911574 55911691 -103688092 + L2 LINE L2 2772 2896 -523 5 1011 368 329 181 32 chr3 55912130 55912378 -103687405 + RMER15 LTR ERVL 272 556 -19 5 1011 566 143 9 0 chr3 55912673 55912778 -103687005 + GA-rich Low_complexity Low_complexity 2 107 0 5 1011 250 283 17 0 chr3 55912806 55912866 -103686917 + ID4_ SINE ID 10 70 -13 5 1011 383 231 11 11 chr3 55913136 55913228 -103686555 - HAL1-3A_ME LINE L1 -792 2066 1975 5 1011 180 111 0 0 chr3 55913228 55913255 -103686528 + (TATG)n Simple_repeat Simple_repeat 2 28 0 5 1011 271 393 8 8 chr3 55913256 55913374 -103686409 - B3 SINE B2 -13 203 86 5 1011 7272 115 9 10 chr3 55913382 55915258 -103684525 + L1_Mus3 LINE L1 4758 6632 -6 5 1011 4037 188 102 69 chr3 55915264 55916378 -103683405 + RMER12 LTR ERVK 172 1828 -20 5 1011 255 31 0 0 chr3 55916790 55916822 -103682961 + (CA)n Simple_repeat Simple_repeat 2 33 0 5 1011 302 309 194 23 chr3 55916914 55917043 -103682740 + RSINE1 SINE B4 15 165 0 5 1011 25 0 0 0 chr3 55917046 55917071 -103682712 + AT_rich Low_complexity Low_complexity 1 25 0 5 1011 663 304 156 18 chr3 55917075 55917831 -103681952 + L1_Mur3 LINE L1 1336 2183 -3664 5 1011 720 115 0 0 chr3 55917831 55917944 -103681839 + (GGAA)n Simple_repeat Simple_repeat 3 115 0 5 1011 3473 83 60 23 chr3 55918149 55918678 -103681105 - Lx3_Mus LINE L1 -11 6998 6450 5 1011 948 94 0 0 chr3 55918679 55918807 -103680976 + L1_Mur1 LINE L1 5557 5684 -202 5 1011 397 204 0 31 chr3 55918923 55919019 -103680764 + RLTR19-int LTR ERVK 1870 1962 -3560 5 1011 1820 260 122 59 chr3 55919080 55919861 -103679922 + RLTR19-int LTR ERVK 2364 3193 -2944 5 1011 625 210 70 98 chr3 55919962 55920247 -103679536 + RLTR19-int LTR ERVK 3405 3681 -2456 5 1011 1864 193 22 79 chr3 55920256 55920661 -103679122 + ORR1B1 LTR MaLR 1 382 -12 5 1011 7807 162 89 84 chr3 55920667 55922620 -103677163 + ORR1B1-int LTR MaLR 1 1963 0 5 1011 1845 179 81 6 chr3 55922620 55922979 -103676804 + ORR1B1 LTR MaLR 1 386 -8 5 1011 387 204 83 31 chr3 55922983 55923079 -103676704 + RLTR19-int LTR ERVK 3701 3801 -2336 5 1011 8829 17 0 0 chr3 55923142 55924157 -103675626 + L1Md_T LINE L1 4572 5586 -297 5 1011 8024 52 1 0 chr3 55924157 55925152 -103674631 + L1Md_T LINE L1 5587 6582 0 5 1011 507 205 48 96 chr3 55925153 55925320 -103674463 + RLTR19-int LTR ERVK 3873 4031 -2106 5 1011 1244 244 51 40 chr3 55925349 55925721 -103674062 + RLTR19-int LTR ERVK 4006 4381 -1756 5 1011 616 100 11 0 chr3 55926210 55926300 -103673483 + ORR1B1 LTR MaLR 288 378 0 5 1011 6162 197 89 10 chr3 55926300 55927699 -103672084 + ORR1B1-int LTR MaLR 1 1509 0 5 1011 1731 193 23 57 chr3 55927725 55928077 -103671706 + ORR1B1 LTR MaLR 55 394 0 5 1011 503 184 174 0 chr3 55928289 55928398 -103671385 + B1_Mur4 SINE Alu 4 131 -19 5 1011 4456 170 141 20 chr3 55928435 55929215 -103670568 + RLTR25A LTR ERVK 3 865 -238 5 1011 311 60 20 0 chr3 55929215 55929265 -103670518 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 5 1011 4456 170 141 20 chr3 55929265 55929465 -103670318 + RLTR25A LTR ERVK 866 1100 -3 5 1011 468 62 0 0 chr3 55929713 55929777 -103670006 + (TG)n Simple_repeat Simple_repeat 1 64 0 5 1011 505 136 49 0 chr3 55929801 55929882 -103669901 - ORR1B2 LTR MaLR -8 359 275 6 1011 645 81 152 9 chr3 55929871 55929983 -103669800 - RMER19B LTR ERVK -4 898 771 6 1011 4857 139 38 79 chr3 55930128 55931068 -103668715 + RMER19B LTR ERVK 1 902 0 6 1011 2353 99 6 0 chr3 55931853 55932175 -103667608 - ORR1A2 LTR MaLR 0 327 4 6 1011 228 252 121 0 chr3 55932773 55932872 -103666911 - L1MEg LINE L1 -4403 1812 1702 6 1011 284 297 132 85 chr3 55933157 55933235 -103666548 + MTEa LTR MaLR 70 158 -201 6 1011 728 11 33 0 chr3 55933235 55933326 -103666457 + (TTCTC)n Simple_repeat Simple_repeat 5 98 0 6 1011 323 263 100 56 chr3 55933326 55933519 -103666264 + MTEa LTR MaLR 159 359 -20 6 1011 315 0 0 0 chr3 55933677 55933712 -103666071 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 6 1011 400 364 31 16 chr3 55933926 55934244 -103665539 - L1MEg LINE L1 -4483 1827 1505 6 1011 528 93 0 0 chr3 55934263 55934338 -103665445 + (GGGA)n Simple_repeat Simple_repeat 2 76 0 6 1011 25 0 0 0 chr3 55934997 55935022 -103664761 + AT_rich Low_complexity Low_complexity 1 25 0 6 1011 394 313 73 20 chr3 55935356 55935506 -103664277 + RSINE1 SINE B4 8 165 0 6 1011 1895 198 67 25 chr3 55935525 55936002 -103663781 - L1_Mur3 LINE L1 -2807 3073 2577 6 1011 24 32 0 0 chr3 55936165 55936196 -103663587 + AT_rich Low_complexity Low_complexity 1 31 0 6 1011 8547 160 58 14 chr3 55937066 55939161 -103660622 + Lx5 LINE L1 816 3004 -2873 6 1011 3980 149 46 52 chr3 55939154 55939773 -103660010 + Lx5 LINE L1 3985 4602 -1275 6 1011 1225 37 0 12 chr3 55939773 55939937 -103659846 - L1Md_F3 LINE L1 -9 6575 6414 6 1011 3980 149 46 52 chr3 55939937 55939963 -103659820 + Lx5 LINE L1 4603 4637 -1240 6 1011 261 0 0 0 chr3 55939963 55939992 -103659791 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 6 1011 3980 149 46 52 chr3 55939992 55940169 -103659614 + Lx5 LINE L1 4638 4803 -1074 6 1011 27516 31 0 0 chr3 55940171 55945570 -103654213 + L1Md_T LINE L1 98 5589 -297 6 1011 9013 6 0 0 chr3 55945570 55946592 -103653191 + L1Md_T LINE L1 5590 6585 0 6 1011 6111 131 25 11 chr3 55946592 55947833 -103651950 + Lx5 LINE L1 4789 6043 -1007 6 1011 8365 150 49 149 chr3 55947861 55950020 -103649763 - ORR1B1-int LTR MaLR -21 1942 1 6 1011 2000 158 20 11 chr3 55950020 55950371 -103649412 - ORR1B1 LTR MaLR 0 394 41 6 1011 1131 185 60 16 chr3 55950418 55950670 -103649113 + L1VL2 LINE L1 96 358 -5977 6 1011 13404 137 34 22 chr3 55950672 55954144 -103645639 + Lx LINE L1 3144 6652 -2 6 1011 1317 218 80 87 chr3 55954730 55955318 -103644465 - RMER17A2 LTR ERVK -1 905 322 6 1011 1110 145 134 74 chr3 55955312 55955595 -103644188 - RLTR24 LTR ERV1 -220 309 10 6 1011 630 295 76 44 chr3 55955599 55956042 -103643741 - L1M2 LINE L1 -1037 4843 4372 6 1011 183 80 0 0 chr3 55956042 55956067 -103643716 + (GTTTG)n Simple_repeat Simple_repeat 5 29 0 6 1011 630 294 70 43 chr3 55956067 55956179 -103643604 - L1M2 LINE L1 -1741 4402 4287 6 1011 277 239 0 10 chr3 55956362 55956463 -103643320 + L1M5 LINE L1 5677 5776 -397 6 1011 237 246 0 0 chr3 55956495 55956560 -103643223 + A-rich Low_complexity Low_complexity 1 65 0 6 1011 463 286 13 66 chr3 55956575 55956803 -103642980 + B3 SINE B2 1 216 0 6 1011 311 374 55 65 chr3 55956838 55957055 -103642728 + B4A SINE B4 1 215 -77 6 1011 13308 48 1 2 chr3 55957055 55958845 -103640938 - L1_Mm LINE L1 -2518 3365 1578 6 1011 2878 208 129 63 chr3 55959677 55960473 -103639310 - RMER19B LTR ERVK -53 849 1 6 1011 518 83 182 70 chr3 55960473 55960616 -103639167 - MurERV4_19-int LTR ERVK 0 5780 5622 6 1011 2612 140 36 11 chr3 55960616 55960868 -103638915 + RLTR19 LTR ERVK 49 307 -192 6 1011 198 0 0 0 chr3 55960868 55960890 -103638893 + (TTTG)n Simple_repeat Simple_repeat 4 25 0 6 1011 2612 140 36 11 chr3 55960890 55961077 -103638706 + RLTR19 LTR ERVK 308 499 0 6 1011 1365 222 80 15 chr3 55961139 55961478 -103638305 + RMER1B Other Other 55 415 -651 6 1011 1104 304 115 15 chr3 55961460 55961861 -103637922 + RMER1A Other Other 15 455 -575 6 1011 607 268 12 12 chr3 55961912 55962082 -103637701 + RMER1A Other Other 74 243 -787 6 1011 2977 242 181 14 chr3 55962093 55962967 -103636816 + RMER1A Other Other 1 1020 -10 6 1011 415 293 86 67 chr3 55963244 55963465 -103636318 + Charlie10b DNA MER1_type 4 241 -1 6 1011 284 297 26 35 chr3 55963657 55963772 -103636011 - MIRb SINE MIR -130 138 25 6 1011 439 126 26 1 chr3 55964581 55964662 -103635121 + B1_Mur3 SINE Alu 60 139 -8 6 1011 495 0 0 0 chr3 55965195 55965250 -103634533 + (TA)n Simple_repeat Simple_repeat 2 56 0 6 1011 22 35 0 0 chr3 55965321 55965350 -103634433 + AT_rich Low_complexity Low_complexity 1 29 0 6 1011 777 250 102 0 chr3 55965482 55965678 -103634105 + B3 SINE B2 1 216 0 6 1011 237 231 27 36 chr3 55965678 55965790 -103633993 + (TA)n Simple_repeat Simple_repeat 2 112 0 6 1011 770 266 103 17 chr3 55966406 55966708 -103633075 - Charlie7 DNA MER1_type -1424 1188 861 6 1011 231 286 0 14 chr3 55966715 55966786 -103632997 - MLT1J LTR MaLR -3 509 440 6 1011 21 0 0 0 chr3 55967000 55967021 -103632762 + AT_rich Low_complexity Low_complexity 1 21 0 6 1011 1195 61 0 0 chr3 55967053 55967201 -103632582 + B1_Mus1 SINE Alu 1 148 0 6 1011 345 241 12 12 chr3 55967362 55967440 -103632343 - RMER30 DNA MER1_type -11 191 114 6 1011 1124 127 0 0 chr3 55967440 55967598 -103632185 + B2_Mm2 SINE B2 1 158 -37 6 1011 433 0 35 0 chr3 55967599 55967656 -103632127 + (TAAA)n Simple_repeat Simple_repeat 3 61 0 6 126 953 127 6 0 chr3 55967657 55967814 -103631969 + (GAA)n Simple_repeat Simple_repeat 3 160 0 6 1012 457 241 62 0 chr3 55967827 55967939 -103631844 - RMER30 DNA MER1_type -78 124 6 6 1012 210 331 7 14 chr3 55968111 55968249 -103631534 + (TA)n Simple_repeat Simple_repeat 1 137 0 6 1012 317 237 39 97 chr3 55968994 55969032 -103630751 + B4A SINE B4 54 85 -207 6 1012 498 198 0 0 chr3 55969032 55969118 -103630665 + B1_Mur3 SINE Alu 1 86 -63 6 1012 483 100 0 0 chr3 55969131 55969201 -103630582 + (GGA)n Simple_repeat Simple_repeat 2 71 0 6 1012 374 187 94 31 chr3 55970787 55970914 -103628869 + L1MB3 LINE L1 5859 5993 -190 6 1012 593 331 123 25 chr3 55971179 55971569 -103628214 + MLT2B4 LTR ERVL 1 482 -74 6 1012 234 0 0 0 chr3 55971569 55971595 -103628188 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 6 1012 258 349 104 31 chr3 55971595 55971640 -103628143 + MLT2B4 LTR ERVL 483 530 -26 6 1012 219 381 85 65 chr3 55972671 55972918 -103626865 - L2c LINE L2 -38 3349 3098 6 1012 21 0 0 0 chr3 55973860 55973881 -103625902 + AT_rich Low_complexity Low_complexity 1 21 0 6 1012 185 318 0 16 chr3 55974824 55974888 -103624895 - MIR SINE MIR -44 218 156 6 1012 705 284 74 0 chr3 55975094 55975270 -103624513 + ID_B1 SINE B4 2 190 -34 6 1012 21 0 0 0 chr3 55975396 55975417 -103624366 + AT_rich Low_complexity Low_complexity 1 21 0 6 1012 218 207 0 17 chr3 55976397 55976456 -103623327 + (CATA)n Simple_repeat Simple_repeat 4 61 0 6 1012 6164 148 27 2 chr3 55976735 55977836 -103621947 + Lx6 LINE L1 4631 5759 -121 6 1012 4984 223 63 90 chr3 55977844 55979096 -103620687 + Lx6 LINE L1 5962 7152 -308 6 1012 549 0 0 0 chr3 55979096 55979157 -103620626 + (TTTTG)n Simple_repeat Simple_repeat 4 64 0 6 1012 4984 223 63 90 chr3 55979157 55979441 -103620342 + Lx6 LINE L1 7153 7456 -4 6 1012 222 143 0 0 chr3 55979717 55979766 -103620017 + (GAAA)n Simple_repeat Simple_repeat 2 50 0 6 1012 313 357 36 0 chr3 55979766 55979906 -103619877 - MLT1J-int LTR MaLR -611 776 632 6 1012 586 162 102 8 chr3 55980639 55980757 -103619026 - MTD LTR MaLR 0 419 291 6 1012 1262 126 18 31 chr3 55980757 55980959 -103618824 - BGLII_Mus LTR ERVK 0 422 219 6 1012 866 60 8 0 chr3 55980959 55981076 -103618707 + (TC)n Simple_repeat Simple_repeat 1 118 0 6 1012 1262 126 18 31 chr3 55981076 55981095 -103618688 - BGLII_Mus LTR ERVK -204 218 204 6 1012 424 51 68 0 chr3 55981086 55981145 -103618638 - BGLII_Mus LTR ERVK -359 63 1 6 1012 869 150 0 29 chr3 55981232 55981369 -103618414 - B1_Mur4 SINE Alu -13 137 5 6 1012 421 293 218 37 chr3 55981372 55981588 -103618195 - MTD LTR MaLR -164 255 1 6 1012 340 206 236 9 chr3 55982046 55982155 -103617628 + B1F2 SINE Alu 33 145 -2 6 1012 384 22 0 0 chr3 55982242 55982287 -103617496 + (TG)n Simple_repeat Simple_repeat 1 45 0 6 1012 325 227 0 0 chr3 55983122 55983210 -103616573 - Lx9 LINE L1 -7 7637 7550 6 1012 24 32 0 0 chr3 55983227 55983258 -103616525 + AT_rich Low_complexity Low_complexity 1 31 0 6 1012 22 0 0 0 chr3 55983636 55983658 -103616125 + AT_rich Low_complexity Low_complexity 1 22 0 6 1012 180 111 0 0 chr3 55985401 55985428 -103614355 + (GAA)n Simple_repeat Simple_repeat 2 28 0 6 1012 201 121 0 0 chr3 55986799 55986832 -103612951 + (CGGG)n Simple_repeat Simple_repeat 4 36 0 6 1012 263 268 31 0 chr3 55987184 55987311 -103612472 + (CCG)n Simple_repeat Simple_repeat 1 131 0 6 1012 21 0 0 0 chr3 55987501 55987522 -103612261 + GC_rich Low_complexity Low_complexity 1 21 0 6 1012 398 280 52 114 chr3 55988812 55988878 -103610905 + B4 SINE B4 27 79 -213 6 1012 804 172 20 7 chr3 55988878 55989024 -103610759 + B1_Mur4 SINE Alu 3 150 0 6 1012 227 231 0 58 chr3 55989177 55989246 -103610537 + (CATATA)n Simple_repeat Simple_repeat 2 66 0 6 1012 208 374 96 0 chr3 55989573 55989688 -103610095 + MIRc SINE MIR 44 169 -99 6 1012 31 0 0 0 chr3 55990696 55990727 -103609056 + AT_rich Low_complexity Low_complexity 1 31 0 6 1012 552 203 91 71 chr3 55990771 55990925 -103608858 - RSINE1 SINE B4 -6 159 3 6 1012 514 326 88 97 chr3 55991031 55991462 -103608321 + MLT1C LTR MaLR 36 462 -5 6 1012 330 26 0 0 chr3 55991462 55991501 -103608282 + (CA)n Simple_repeat Simple_repeat 2 40 0 6 1012 315 0 0 0 chr3 55991947 55991982 -103607801 + (A)n Simple_repeat Simple_repeat 1 35 0 6 1012 256 299 15 0 chr3 55992557 55992624 -103607159 + ID4_ SINE ID 3 70 -13 6 1012 306 336 128 15 chr3 55992863 55992996 -103606787 + B4 SINE B4 56 203 -89 6 1012 589 301 14 0 chr3 55992885 55993028 -103606755 + B1_Mur1 SINE Alu 5 149 0 6 1012 506 245 33 53 chr3 55994823 55994974 -103604809 + B1_Mur2 SINE Alu 2 149 0 6 1012 726 263 179 40 chr3 55995214 55995539 -103604244 - ORR1D2 LTR MaLR 0 370 1 6 1012 398 18 0 0 chr3 55998001 55998056 -103601727 + L1Md_T LINE L1 6528 6582 0 6 1012 693 267 6 0 chr3 55998512 55998673 -103601110 + RSINE1 SINE B4 3 164 -1 6 1012 303 104 0 0 chr3 55998680 55998728 -103601055 + (CA)n Simple_repeat Simple_repeat 1 48 0 6 1012 27 0 0 0 chr3 55998880 55998907 -103600876 + AT_rich Low_complexity Low_complexity 1 27 0 6 1012 1541 140 100 24 chr3 55999246 55999576 -103600207 - Lx4A LINE L1 -920 6138 5784 6 1012 201 39 0 0 chr3 55999576 55999602 -103600181 + (GTTTG)n Simple_repeat Simple_repeat 4 29 0 7 1012 1014 81 19 6 chr3 55999604 55999765 -103600018 - L1_Mus3 LINE L1 0 6638 6476 7 1012 643 293 20 13 chr3 56000251 56000403 -103599380 + B3 SINE B2 1 153 -63 1 1012 230 0 33 0 chr3 56000420 56000450 -103599333 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 2 1012 249 423 90 0 chr3 56000878 56001067 -103598716 + MLT1J-int LTR MaLR 989 1194 -193 3 1012 630 39 0 0 chr3 56001947 56002024 -103597759 + (TC)n Simple_repeat Simple_repeat 2 78 0 4 1012 461 204 23 8 chr3 56002033 56002166 -103597617 + CT-rich Low_complexity Low_complexity 3 137 0 5 1012 2186 135 33 0 chr3 56002193 56002526 -103597257 - Lx LINE L1 -5 6649 6306 6 1012 637 285 48 43 chr3 56002635 56002822 -103596961 + B4A SINE B4 6 193 -99 7 1012 986 266 5 0 chr3 56002822 56003029 -103596754 - ORR1D1 LTR MaLR 0 374 167 8 1012 475 107 24 0 chr3 56003029 56003113 -103596670 + (GGGA)n Simple_repeat Simple_repeat 3 88 0 9 1012 558 221 105 52 chr3 56003113 56003285 -103596498 - ORR1D1 LTR MaLR -193 181 1 8 1012 44 0 0 0 chr3 56005300 56005344 -103594439 + AT_rich Low_complexity Low_complexity 1 44 0 1 1012 1118 96 0 20 chr3 56005349 56005498 -103594285 - B1_Mus1 SINE Alu -1 147 2 1 1012 617 319 44 0 chr3 56005871 56006075 -103593708 + MER2 DNA MER2_type 118 330 -15 1 1012 426 94 0 0 chr3 56006572 56006636 -103593147 + (CATA)n Simple_repeat Simple_repeat 1 64 0 1 1012 277 326 38 23 chr3 56006976 56007108 -103592675 - MTE-int LTR MaLR -285 1295 1162 1 1012 646 188 155 28 chr3 56007422 56007564 -103592219 + B3A SINE B2 1 160 -38 1 1012 762 326 179 27 chr3 56007643 56008302 -103591481 - MLT-int LTR MaLR -975 760 2 1 1012 218 128 37 37 chr3 56008866 56008947 -103590836 + (TCTCTG)n Simple_repeat Simple_repeat 1 81 0 1 1012 252 261 80 80 chr3 56009343 56009468 -103590315 + MLT1A1 LTR MaLR 1 125 -240 1 1012 372 278 35 9 chr3 56009553 56009669 -103590114 + MLT1A1 LTR MaLR 290 408 0 1 1012 904 138 14 0 chr3 56010198 56010336 -103589447 + B1_Mur2 SINE Alu 9 148 -1 1 1012 734 287 108 19 chr3 56011490 56011883 -103587900 + MLT2B4 LTR ERVL 4 423 -41 2 1012 286 254 0 0 chr3 56011929 56012000 -103587783 + Ricksha_c DNA MuDR 847 917 -1131 2 1012 747 316 88 36 chr3 56012072 56012460 -103587323 + MLT1A1-int LTR MaLR 250 657 -714 1 1012 1950 141 10 94 chr3 56012472 56012856 -103586927 + ORR1B1 LTR MaLR 41 392 -2 2 1012 300 111 0 0 chr3 56013028 56013082 -103586701 + (T)n Simple_repeat Simple_repeat 1 54 0 2 1012 259 388 39 0 chr3 56013093 56013196 -103586587 + MLT1A-int LTR MaLR 1276 1382 -353 2 1012 36311 48 0 5 chr3 56013203 56018737 -103581046 + L1Md_T LINE L1 1 5589 -297 2 1012 8934 36 0 0 chr3 56018737 56019733 -103580050 + L1Md_T LINE L1 5590 6585 0 2 1012 563 299 204 42 chr3 56019825 56020090 -103579693 + ORR1E LTR MaLR 50 357 -2 2 1012 865 311 74 3 chr3 56020090 56020400 -103579383 + MLT1A-int LTR MaLR 1404 1735 0 2 1012 391 295 234 45 chr3 56020400 56020728 -103579055 + MLT1A LTR MaLR 1 390 0 2 1012 293 0 27 0 chr3 56020761 56020798 -103578985 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 2 1012 1151 87 0 0 chr3 56020820 56020958 -103578825 - B1_Mus1 SINE Alu -8 140 3 2 1012 540 222 57 28 chr3 56022047 56022223 -103577560 - L1MB8 LINE L1 0 6178 5998 2 1012 387 259 206 0 chr3 56022235 56022366 -103577417 - L1MB8 LINE L1 -218 5966 5809 2 1012 495 0 0 0 chr3 56022594 56022649 -103577134 + (TG)n Simple_repeat Simple_repeat 1 55 0 3 1012 338 277 0 47 chr3 56022652 56022758 -103577025 + MT2A LTR ERVL 138 238 -295 3 1012 312 188 0 0 chr3 56022762 56022826 -103576957 + (ATG)n Simple_repeat Simple_repeat 2 65 0 3 1012 345 376 7 14 chr3 56022826 56022969 -103576814 + MT2A LTR ERVL 226 367 -166 3 1012 441 0 0 0 chr3 56023045 56023094 -103576689 + (CA)n Simple_repeat Simple_repeat 2 50 0 3 1012 1319 171 5 0 chr3 56023121 56023337 -103576446 - URR1B DNA MER1_type -8 217 1 3 1012 317 282 56 64 chr3 56023462 56023587 -103576196 + RSINE1 SINE B4 3 126 -39 3 1012 501 233 78 0 chr3 56023618 56023721 -103576062 + ORR1D2 LTR MaLR 2 112 -258 3 1012 416 335 18 12 chr3 56023752 56023915 -103575868 - MIR SINE MIR -29 233 70 3 1012 180 0 0 0 chr3 56024340 56024360 -103575423 + (CGGGA)n Simple_repeat Simple_repeat 2 21 0 3 1012 1353 145 51 0 chr3 56024591 56024805 -103574978 - URR1B DNA MER1_type 0 225 1 3 1012 327 350 74 12 chr3 56025111 56025273 -103574510 - LTR53 LTR ERVL -27 492 321 4 1012 870 268 80 15 chr3 56025411 56025737 -103574046 - L1MA6 LINE L1 -277 6023 5677 4 1012 504 86 0 0 chr3 56025748 56025818 -103573965 + (TTTA)n Simple_repeat Simple_repeat 4 73 0 4 1012 1230 173 155 8 chr3 56025822 56026073 -103573710 - Lx5 LINE L1 -9 7041 6754 4 1012 892 198 26 36 chr3 56026073 56026267 -103573516 - L1MA6 LINE L1 -600 5691 5500 4 1012 393 22 0 0 chr3 56026319 56026365 -103573418 + (CA)n Simple_repeat Simple_repeat 2 47 0 4 1012 869 304 36 101 chr3 56027189 56027547 -103572236 - MTD LTR MaLR -59 360 26 4 1012 1270 67 0 11 chr3 56028602 56028782 -103571001 + (GGAA)n Simple_repeat Simple_repeat 3 180 0 4 1012 666 0 0 0 chr3 56028782 56028856 -103570927 + (GGAAA)n Simple_repeat Simple_repeat 5 78 0 4 1012 1064 57 0 25 chr3 56028856 56029017 -103570766 + (GGAA)n Simple_repeat Simple_repeat 3 159 0 4 1012 334 283 0 21 chr3 56029955 56030049 -103569734 + ID_B1 SINE B4 129 220 -4 4 1012 285 289 72 63 chr3 56030113 56030128 -103569655 - B1_Mm SINE Alu -22 125 14 5 1012 453 271 52 0 chr3 56030128 56030224 -103569559 - ID_B1 SINE B4 -29 195 95 5 1012 1246 242 34 116 chr3 56030785 56031173 -103568610 - MTE2a LTR MaLR -13 366 11 5 1012 759 125 406 0 chr3 56031529 56031689 -103568094 + URR1B DNA MER1_type 1 225 0 5 1012 23 54 0 0 chr3 56031881 56031918 -103567865 + AT_rich Low_complexity Low_complexity 1 37 0 5 1012 940 123 0 47 chr3 56031931 56032102 -103567681 - L1_Mus4 LINE L1 -5 6631 6469 5 1012 242 421 7 36 chr3 56032403 56032541 -103567242 - L4 LINE RTE -701 1328 1195 5 1012 342 0 0 0 chr3 56033030 56033068 -103566715 + (TG)n Simple_repeat Simple_repeat 2 39 0 5 1012 452 319 108 0 chr3 56033138 56033304 -103566479 - MER77 LTR ERVL -9 598 415 5 1012 409 246 49 66 chr3 56033312 56033434 -103566349 + MER58B DNA MER1_type 219 338 -3 5 1012 207 169 119 30 chr3 56033768 56033835 -103565948 + L3 LINE CR1 3561 3633 -856 6 1012 1762 230 36 3 chr3 56034356 56034714 -103565069 - ORR1D2 LTR MaLR 0 370 1 6 1012 494 256 33 33 chr3 56034877 56034998 -103564785 + MT2B LTR ERVL 35 155 -378 6 1012 552 257 22 0 chr3 56034973 56035109 -103564674 + MT2B LTR ERVL 92 230 -303 6 1012 776 233 57 75 chr3 56035280 56035458 -103564325 + MT2B LTR ERVL 379 559 -42 6 1012 441 0 0 0 chr3 56035458 56035507 -103564276 + (CA)n Simple_repeat Simple_repeat 2 50 0 6 1012 804 21 0 0 chr3 56035511 56035605 -103564178 + (GA)n Simple_repeat Simple_repeat 1 94 0 6 1012 776 233 57 75 chr3 56035605 56035648 -103564135 + MT2B LTR ERVL 560 601 0 6 1012 2097 158 47 8 chr3 56035651 56036015 -103563768 + ORR1C1 LTR MaLR 1 378 0 6 1012 1494 53 0 0 chr3 56036520 56036763 -103563020 + (TCC)n Simple_repeat Simple_repeat 1 243 0 6 1012 252 375 10 0 chr3 56036800 56036896 -103562887 + MER58B DNA MER1_type 245 341 0 6 1012 294 125 0 14 chr3 56036968 56037016 -103562767 - MT2A LTR ERVL 0 533 486 6 1012 342 0 0 0 chr3 56037016 56037054 -103562729 + (TG)n Simple_repeat Simple_repeat 2 39 0 6 1012 294 125 0 14 chr3 56037054 56037078 -103562705 - MT2A LTR ERVL -48 485 462 6 1012 473 110 12 0 chr3 56037401 56037483 -103562300 + (TTTC)n Simple_repeat Simple_repeat 2 84 0 7 1012 681 188 0 0 chr3 56037506 56037655 -103562128 + CT-rich Low_complexity Low_complexity 3 151 0 7 1012 1211 260 105 6 chr3 56037655 56037988 -103561795 - ORR1D2 LTR MaLR -4 366 1 7 1012 839 197 0 33 chr3 56038069 56038221 -103561562 + B1_Mus2 SINE Alu 1 147 0 7 1012 719 254 14 0 chr3 56038654 56038796 -103560987 - RSINE1 SINE B4 -19 146 3 7 1012 989 221 267 24 chr3 56038848 56039109 -103560674 + MTC LTR MaLR 12 358 -63 7 1012 3105 65 13 10 chr3 56039109 56039501 -103560282 - L1Md_F2 LINE L1 0 6582 6190 7 1012 989 221 267 24 chr3 56039501 56039569 -103560214 + MTC LTR MaLR 359 421 0 7 1012 239 71 24 0 chr3 56040564 56040606 -103559177 + (TTAA)n Simple_repeat Simple_repeat 1 43 0 7 1012 236 139 0 0 chr3 56041345 56041388 -103558395 - ORR1B1 LTR MaLR 0 394 352 7 1012 1636 143 164 3 chr3 56041382 56041705 -103558078 + ORR1B1 LTR MaLR 20 394 0 7 1012 599 322 20 0 chr3 56041804 56041956 -103557827 + RSINE1 SINE B4 2 156 -9 8 1012 432 0 0 0 chr3 56041978 56042026 -103557757 + (CA)n Simple_repeat Simple_repeat 2 49 0 8 1012 1551 231 132 0 chr3 56042121 56042484 -103557299 - MTD LTR MaLR 0 419 9 8 1012 202 194 0 0 chr3 56042751 56042787 -103556996 + GA-rich Low_complexity Low_complexity 2 37 0 8 1012 495 48 0 0 chr3 56043398 56043460 -103556323 + (GA)n Simple_repeat Simple_repeat 1 62 0 8 1012 251 340 82 0 chr3 56043547 56043644 -103556139 - MLT1K LTR MaLR 0 595 491 8 1012 2959 52 3 14 chr3 56045042 56045392 -103554391 - ORR1A1 LTR MaLR 0 346 1 8 1012 363 241 28 107 chr3 56045706 56045883 -103553900 + MIRc SINE MIR 44 206 -62 8 1012 215 228 17 50 chr3 56045966 56046026 -103553757 + B1_Mus2 SINE Alu 2 59 -88 8 1012 254 0 0 159 chr3 56046027 56046153 -103553630 + (CAGAG)n Simple_repeat Simple_repeat 5 110 0 8 1012 264 200 0 62 chr3 56046156 56046220 -103553563 + B1_Mur2 SINE Alu 42 101 -48 9 1012 1292 181 0 36 chr3 56046583 56046806 -103552977 + B3 SINE B2 1 215 -1 9 1012 391 332 109 0 chr3 56047079 56047317 -103552466 + L2 LINE L2 1895 2158 -1261 9 1012 1903 168 52 70 chr3 56047387 56047621 -103552162 + ORR1C1 LTR MaLR 1 230 -148 9 1012 2667 86 3 0 chr3 56047621 56047947 -103551836 - ORR1A2 LTR MaLR 0 327 1 9 1012 1903 168 52 70 chr3 56047947 56048097 -103551686 + ORR1C1 LTR MaLR 231 378 0 9 1012 3787 89 57 23 chr3 56049274 56049803 -103549980 - L1_Mus3 LINE L1 -3 6635 6089 9 1012 465 332 111 58 chr3 56050437 56050680 -103549103 - B4A SINE B4 -36 256 1 9 1012 38936 7 3 0 chr3 56050823 56056162 -103543621 + L1Md_A LINE L1 233 5586 -297 9 1012 9633 2 0 0 chr3 56056162 56057158 -103542625 + L1Md_A LINE L1 5587 6582 0 9 1012 1329 206 125 6 chr3 56057158 56057470 -103542313 + ORR1D2 LTR MaLR 22 370 0 9 1012 777 197 0 7 chr3 56058334 56058477 -103541306 + B1_Mur1 SINE Alu 1 142 -7 9 1012 252 0 0 0 chr3 56058481 56058509 -103541274 + (A)n Simple_repeat Simple_repeat 1 28 0 1 1012 723 296 43 21 chr3 56058684 56058964 -103540819 - B4A SINE B4 -6 286 1 1 1012 22 0 0 0 chr3 56059018 56059040 -103540743 + AT_rich Low_complexity Low_complexity 1 22 0 1 1012 835 237 9 46 chr3 56059060 56059277 -103540506 - B3 SINE B2 -5 211 3 1 1012 348 217 0 0 chr3 56059390 56059450 -103540333 - B1F1 SINE Alu -89 60 1 1 1012 24 0 0 0 chr3 56059460 56059484 -103540299 + AT_rich Low_complexity Low_complexity 1 24 0 1 1012 1076 161 59 13 chr3 56059698 56059937 -103539846 - RMER17C LTR ERVK 0 410 161 1 1012 241 263 106 63 chr3 56060360 56060502 -103539281 - MIRb SINE MIR -50 218 71 1 1012 226 321 54 0 chr3 56061193 56061305 -103538478 - MER34 LTR ERV1 -16 526 409 1 1012 1230 225 83 64 chr3 56061403 56061610 -103538173 - MTD LTR MaLR -2 417 211 1 1012 968 159 0 0 chr3 56061610 56061755 -103538028 - B1_Mus1 SINE Alu -3 145 1 1 1012 1230 225 83 64 chr3 56061755 56061938 -103537845 - MTD LTR MaLR -209 210 22 1 1012 441 0 0 0 chr3 56061938 56061987 -103537796 + (CAA)n Simple_repeat Simple_repeat 3 51 0 1 1012 1230 225 83 64 chr3 56061987 56062004 -103537779 - MTD LTR MaLR -398 21 1 1 1012 761 152 36 0 chr3 56062118 56062256 -103537527 - URR1B DNA MER1_type 0 225 83 1 1012 259 314 12 12 chr3 56062909 56063021 -103536762 - MER34 LTR ERV1 -459 112 1 1 1012 333 0 0 0 chr3 56063959 56063996 -103535787 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 1012 245 306 197 20 chr3 56064177 56064324 -103535459 - MIRb SINE MIR -11 257 85 1 1012 1065 233 9 0 chr3 56064438 56064648 -103535135 - B3 SINE B2 0 216 5 1 1012 939 277 13 0 chr3 56064722 56064953 -103534830 + MTEa LTR MaLR 144 377 -2 1 1012 421 306 43 73 chr3 56065346 56065689 -103534094 + RLTR12B LTR ERVK 19 332 -196 1 1012 24 32 0 0 chr3 56066165 56066196 -103533587 + AT_rich Low_complexity Low_complexity 1 31 0 1 1012 1004 304 84 30 chr3 56067359 56067929 -103531854 - Lx8 LINE L1 -5 7468 6868 1 1012 618 268 43 110 chr3 56067929 56068053 -103531730 - MT2A LTR ERVL 0 601 483 1 1012 485 92 13 0 chr3 56068053 56068129 -103531654 + (TA)n Simple_repeat Simple_repeat 2 78 0 1 1012 1080 222 120 68 chr3 56068129 56068479 -103531304 - MT2A LTR ERVL -119 482 1 1 1012 419 292 14 14 chr3 56068483 56068629 -103531154 - Lx7 LINE L1 -839 6857 6712 1 1012 1073 240 80 118 chr3 56068913 56069353 -103530430 - RLTR23 LTR ERV1 0 430 8 1 1012 844 215 0 0 chr3 56069445 56069594 -103530189 - B3 SINE B2 -67 149 1 1 1012 180 326 105 0 chr3 56069749 56069835 -103529948 - L3 LINE CR1 -1074 3415 3321 1 1012 280 317 85 0 chr3 56070085 56070167 -103529616 - MLT1L LTR MaLR -375 235 147 1 1012 422 305 23 8 chr3 56070381 56070510 -103529273 - MTE2b LTR MaLR 0 379 249 1 1012 1078 176 10 26 chr3 56070504 56070697 -103529086 + B3 SINE B2 27 216 0 1 1012 232 284 27 0 chr3 56071706 56071780 -103528003 + RMER15 LTR ERVL 408 483 -92 1 1012 211 28 56 0 chr3 56071884 56071920 -103527863 + (TTTTG)n Simple_repeat Simple_repeat 2 39 0 1 1012 348 333 35 70 chr3 56072017 56072217 -103527566 - MIRc SINE MIR -61 207 15 1 1012 4466 12 0 0 chr3 56072679 56073172 -103526611 + MT2_Mm LTR ERVL 1 493 0 1 1012 21 57 0 0 chr3 56073286 56073321 -103526462 + AT_rich Low_complexity Low_complexity 1 35 0 1 1012 340 334 17 11 chr3 56073855 56073962 -103525821 + PB1D10 SINE Alu 5 122 -5 1 1012 293 326 90 38 chr3 56074156 56074524 -103525259 + MER31A LTR ERV1 39 482 -3 1 1012 4258 156 81 70 chr3 56075139 56076032 -103523751 - RMER19B LTR ERVK 0 902 1 1 1012 697 275 52 17 chr3 56076262 56076601 -103523182 + L1MA9 LINE L1 5692 6029 -283 1 1012 1123 55 0 20 chr3 56077072 56077221 -103522562 + B1_Mm SINE Alu 2 147 0 1 1012 629 262 0 0 chr3 56078373 56078499 -103521284 + ID_B1 SINE B4 90 215 -9 1 1012 353 286 28 28 chr3 56079438 56079582 -103520201 - B1F SINE Alu -5 144 1 1 1012 274 352 80 27 chr3 56079599 56079857 -103519926 - L2a LINE L2 -3 3423 3107 1 1012 4603 88 36 121 chr3 56080049 56080873 -103518910 + L1_Mus3 LINE L1 5879 6632 -6 1 1012 22 0 0 0 chr3 56082704 56082726 -103517057 + AT_rich Low_complexity Low_complexity 1 22 0 1 1012 754 301 51 34 chr3 56083010 56083306 -103516477 - RMER15 LTR ERVL -2 573 273 1 1012 211 356 9 63 chr3 56083471 56083582 -103516201 - RSINE1 SINE B4 -1 164 60 1 1012 386 273 20 20 chr3 56083539 56083627 -103516156 + B3A SINE B2 84 173 -25 1 1012 2881 31 34 0 chr3 56083627 56083981 -103515802 - L1Md_F2 LINE L1 0 6582 6217 1 1012 386 273 20 20 chr3 56083981 56083993 -103515790 + B3A SINE B2 174 184 -14 1 1012 288 289 374 5 chr3 56084616 56084818 -103514965 + L2 LINE L2 1262 1538 -1881 1 1012 276 30 0 0 chr3 56085102 56085135 -103514648 + (CAAT)n Simple_repeat Simple_repeat 4 36 0 1 1012 251 326 51 0 chr3 56085597 56085695 -103514088 + LTR16B LTR ERVL 205 307 -156 1 1012 264 208 0 0 chr3 56085693 56085741 -103514042 + B1_Mur4 SINE Alu 38 85 -65 1 1012 921 66 0 0 chr3 56085751 56085872 -103513911 + (GAAA)n Simple_repeat Simple_repeat 4 124 0 1 1012 282 291 0 18 chr3 56085995 56086107 -103513676 - Lx7 LINE L1 -22 7674 7565 1 1012 2118 39 0 0 chr3 56086224 56086480 -103513303 - MTA_Mm LTR MaLR 0 396 141 1 1012 7793 39 2 36 chr3 56086473 56087119 -103512664 - MT-int LTR MaLR -94 1004 394 1 1012 784 10 0 19 chr3 56087119 56087225 -103512558 - L1Md_T LINE L1 0 6582 6479 1 1012 7793 39 2 36 chr3 56087225 56087618 -103512165 - MT-int LTR MaLR -705 393 1 1 1012 4474 10 0 0 chr3 56087620 56088113 -103511670 - MT2_Mm LTR ERVL 0 493 1 1 1012 227 358 35 35 chr3 56088117 56088230 -103511553 - Lx8 LINE L1 -230 7243 7131 1 1012 488 278 43 0 chr3 56088457 56088572 -103511211 - B1_Mur1 SINE Alu -28 121 2 1 1012 187 257 70 14 chr3 56088573 56088644 -103511139 + L2 LINE L2 2374 2448 -971 1 1012 777 250 25 45 chr3 56088943 56089081 -103510702 - B3A SINE B2 0 198 68 1 1012 2705 158 28 49 chr3 56089081 56089654 -103510129 - RLTR31_Mm LTR ERVK 0 561 1 1 1012 777 250 25 45 chr3 56089654 56089716 -103510067 - B3A SINE B2 -131 67 2 1 1012 1056 163 87 15 chr3 56090295 56090501 -103509282 + URR1B DNA MER1_type 5 225 0 1 1012 399 21 0 0 chr3 56091099 56091147 -103508636 + (CA)n Simple_repeat Simple_repeat 1 48 0 1 1012 767 241 48 5 chr3 56091539 56091727 -103508056 - B3A SINE B2 -2 196 1 1 1012 387 141 0 0 chr3 56092070 56092134 -103507649 + (CAA)n Simple_repeat Simple_repeat 2 65 0 1 1012 1014 148 108 52 chr3 56092336 56092549 -103507234 + URR1A DNA MER1_type 1 225 -1 1 1012 207 0 0 0 chr3 56092883 56092906 -103506877 + (TTAA)n Simple_repeat Simple_repeat 4 26 0 1 1012 1182 75 0 0 chr3 56093000 56093147 -103506636 + B1_Mm SINE Alu 1 147 0 1 1012 186 43 0 0 chr3 56093147 56093170 -103506613 + (A)n Simple_repeat Simple_repeat 1 23 0 1 1012 3506 23 0 0 chr3 56093403 56093799 -103505984 - MTA_Mm LTR MaLR 0 396 1 1 1012 564 89 0 0 chr3 56095144 56095223 -103504560 + (TC)n Simple_repeat Simple_repeat 2 80 0 1 1012 823 268 122 26 chr3 56095488 56095982 -103503801 + L1MB3 LINE L1 5634 6174 -9 1 1012 280 185 10 18 chr3 56096321 56096387 -103503396 + MTEb LTR MaLR 291 360 -19 1 1012 1599 321 88 41 chr3 56096391 56096808 -103502975 + MTEb-int LTR MaLR 14 454 -1126 1 1012 1325 168 5 9 chr3 56096808 56097024 -103502759 + B3 SINE B2 1 215 -1 1 1012 1599 321 88 41 chr3 56097024 56097415 -103502368 + MTEb-int LTR MaLR 455 860 -720 1 1012 26 30 0 0 chr3 56098010 56098043 -103501740 + AT_rich Low_complexity Low_complexity 1 33 0 1 1012 529 314 66 10 chr3 56098109 56098305 -103501478 - B3 SINE B2 -8 208 2 1 1013 731 176 0 0 chr3 56099084 56099203 -103500580 - PB1D9 SINE Alu 0 120 2 1 1013 180 0 0 0 chr3 56099469 56099489 -103500294 + (TA)n Simple_repeat Simple_repeat 2 21 0 1 1013 720 199 193 0 chr3 56100027 56100203 -103499580 - B3 SINE B2 -5 211 2 1 1013 462 272 62 29 chr3 56101096 56101338 -103498445 + MER112 DNA MER1_type 1 250 -11 1 1013 27 29 0 0 chr3 56101954 56101988 -103497795 + AT_rich Low_complexity Low_complexity 1 34 0 1 1013 1874 209 15 118 chr3 56102042 56102629 -103497154 - RLTR31_Mur LTR ERVK -15 538 12 1 1013 243 345 115 70 chr3 56103250 56103493 -103496290 - ORR1E LTR MaLR -105 254 1 1 1013 324 0 0 0 chr3 56103616 56103652 -103496131 + (TTTTG)n Simple_repeat Simple_repeat 4 39 0 1 1013 345 169 34 0 chr3 56103652 56103711 -103496072 - PB1D10 SINE Alu -12 105 45 1 1013 250 218 36 0 chr3 56103662 56103717 -103496066 - ID_B1 SINE B4 -49 175 119 1 1013 345 281 42 16 chr3 56104897 56105037 -103494746 + MLT1A1 LTR MaLR 215 407 -1 1 1013 469 262 59 34 chr3 56106070 56106211 -103493572 + PB1D7 SINE Alu 1 132 -17 1 1013 4560 111 30 13 chr3 56107669 56108378 -103491405 - Lx LINE L1 -2 6652 5932 1 1013 221 312 49 12 chr3 56108716 56108797 -103490986 + B1F SINE Alu 1 84 -65 1 1013 1281 194 233 30 chr3 56108820 56109229 -103490554 + RMER19B LTR ERVK 88 664 -238 1 1013 527 281 31 15 chr3 56109580 56109710 -103490073 + B3 SINE B2 51 182 -34 1 1013 375 253 0 0 chr3 56109735 56109818 -103489965 - RMER19B LTR ERVK -287 615 533 1 1013 195 132 0 0 chr3 56109824 56109900 -103489883 + (TATATG)n Simple_repeat Simple_repeat 1 76 0 1 1013 24 32 0 0 chr3 56109909 56109940 -103489843 + AT_rich Low_complexity Low_complexity 1 31 0 1 1013 464 204 106 10 chr3 56110635 56110739 -103489044 + MLT2B3 LTR ERVL 1 114 -440 1 1013 234 294 43 96 chr3 56110810 56110904 -103488879 - MLT2B1 LTR ERVL -228 292 204 1 1013 24 32 0 0 chr3 56111042 56111073 -103488710 + AT_rich Low_complexity Low_complexity 1 31 0 1 1013 1165 68 0 13 chr3 56111076 56111225 -103488558 + B1_Mus1 SINE Alu 2 148 0 1 1013 243 0 0 0 chr3 56111261 56111288 -103488495 + (CAAAA)n Simple_repeat Simple_repeat 4 30 0 2 1013 410 241 5 51 chr3 56111835 56112052 -103487731 - MER31-int LTR ERV1 -3497 1439 1310 2 1013 23 0 0 0 chr3 56112145 56112168 -103487615 + AT_rich Low_complexity Low_complexity 1 23 0 2 1013 330 132 0 0 chr3 56112271 56112324 -103487459 + (TA)n Simple_repeat Simple_repeat 1 53 0 2 1013 297 0 0 0 chr3 56113630 56113663 -103486120 + (TTTA)n Simple_repeat Simple_repeat 4 36 0 2 1013 471 287 10 0 chr3 56113663 56113764 -103486019 - PB1D10 SINE Alu -13 104 3 2 1013 236 231 0 19 chr3 56113766 56113819 -103485964 - MLT1A1 LTR MaLR -38 370 319 2 1013 2195 72 178 6 chr3 56114213 56114562 -103485221 + L1Md_F2 LINE L1 6163 6571 -11 2 1013 1303 250 63 60 chr3 56114941 56115306 -103484477 + ORR1E LTR MaLR 1 379 0 2 1013 684 153 54 0 chr3 56115699 56115810 -103483973 - B1_Mus2 SINE Alu -20 127 11 2 1013 484 283 110 10 chr3 56115848 56116136 -103483647 - MER31B LTR ERV1 -107 359 1 2 1013 227 157 0 19 chr3 56116185 56116237 -103483546 + LTR37A LTR ERV1 371 421 -5 2 1013 189 0 0 0 chr3 56116239 56116260 -103483523 + (CAA)n Simple_repeat Simple_repeat 2 22 0 2 1013 7080 86 3 1 chr3 56116689 56118117 -103481666 - L1_Mus1 LINE L1 0 6567 5136 2 1013 22 0 0 0 chr3 56118622 56118644 -103481139 + AT_rich Low_complexity Low_complexity 1 22 0 2 1013 413 66 16 0 chr3 56118988 56119049 -103480734 + (TTTC)n Simple_repeat Simple_repeat 2 63 0 2 1013 797 221 0 0 chr3 56119061 56119210 -103480573 - B1_Mur4 SINE Alu 0 150 2 2 1013 343 327 69 0 chr3 56119277 56119378 -103480405 - PB1D10 SINE Alu -9 108 1 2 1013 242 333 39 0 chr3 56119293 56119395 -103480388 - ID_B1 SINE B4 -51 173 68 2 1013 189 218 106 75 chr3 56119681 56119775 -103480008 + MIR3 SINE MIR 3 99 -109 2 1013 809 255 116 43 chr3 56119829 56120195 -103479588 - MER31A LTR ERV1 -51 415 1 2 1013 2135 190 19 54 chr3 56120703 56120915 -103478868 + MTC LTR MaLR 1 210 -211 2 1013 1780 158 43 16 chr3 56120915 56121237 -103478546 + Lx4A LINE L1 6719 7049 -9 2 1013 546 57 0 0 chr3 56121241 56121311 -103478472 + (GA)n Simple_repeat Simple_repeat 2 71 0 2 1013 2135 190 19 54 chr3 56121311 56121521 -103478262 + MTC LTR MaLR 211 413 -8 2 1013 651 276 36 6 chr3 56121513 56121681 -103478102 + B4A SINE B4 112 284 -8 2 1013 21 57 0 0 chr3 56121747 56121782 -103478001 + AT_rich Low_complexity Low_complexity 1 35 0 2 1013 210 162 0 0 chr3 56122556 56122593 -103477190 + T-rich Low_complexity Low_complexity 1 37 0 2 1013 528 264 158 23 chr3 56123840 56124011 -103475772 - B3A SINE B2 -4 194 1 2 1013 860 255 127 8 chr3 56124110 56124355 -103475428 + MTD LTR MaLR 1 274 -145 2 1013 1569 183 69 63 chr3 56124362 56124583 -103475200 + ORR1C2 LTR MaLR 1 213 -171 2 1013 4408 119 98 40 chr3 56124583 56125424 -103474359 - RMER17D LTR ERVK 0 889 1 2 1013 1569 183 69 63 chr3 56125424 56125581 -103474202 + ORR1C2 LTR MaLR 214 381 -3 2 1013 403 208 112 9 chr3 56125582 56125689 -103474094 + MTE2a LTR MaLR 262 379 0 2 1013 1304 286 108 76 chr3 56125689 56126479 -103473304 + MTE2a-int LTR MaLR 1 1289 -291 2 1013 763 280 24 9 chr3 56126479 56126692 -103473091 - B3 SINE B2 0 216 1 2 1013 1304 266 109 98 chr3 56126692 56126951 -103472832 + MTE2a-int LTR MaLR 989 1251 -7 2 1013 1454 256 55 22 chr3 56126994 56127358 -103472425 + MTD LTR MaLR 44 419 0 2 1013 1071 264 104 25 chr3 56127378 56127848 -103471935 - L1_Mur3 LINE L1 -11 5869 5363 2 1013 353 230 10 10 chr3 56127843 56127944 -103471839 + L1_Mur3 LINE L1 4759 4859 -1021 2 1013 268 261 0 0 chr3 56127971 56128036 -103471747 + RMER1A Other Other 90 154 -876 2 1013 2534 53 0 0 chr3 56128036 56128359 -103471424 + MMERGLN-int LTR ERV1 7234 7556 0 2 1013 3143 60 176 5 chr3 56128359 56128796 -103470987 + RLTR1B LTR ERV1 1 512 0 2 1013 3068 194 128 24 chr3 56128815 56129620 -103470163 + RMER1A Other Other 15 1030 0 2 1013 3432 33 0 2 chr3 56129640 56130037 -103469746 + MTA_Mm LTR MaLR 1 396 0 2 1013 555 90 0 0 chr3 56130532 56130610 -103469173 + (GAAA)n Simple_repeat Simple_repeat 2 79 0 2 1013 558 249 142 65 chr3 56130657 56130966 -103468817 - L2a LINE L2 -1 3425 3093 2 1013 1230 101 6 0 chr3 56131380 56131548 -103468235 + B2_Mm1t SINE B2 6 174 -19 2 1013 360 327 99 18 chr3 56132925 56133096 -103466687 + MER34A1 LTR ERV1 48 232 -355 2 1013 952 351 31 14 chr3 56133668 56134182 -103465601 - Lx8 LINE L1 -96 7377 6855 2 1013 497 248 15 8 chr3 56134183 56134313 -103465470 + MER34A1 LTR ERV1 385 515 -72 2 1013 249 33 0 0 chr3 56135109 56135139 -103464644 + (TG)n Simple_repeat Simple_repeat 2 31 0 2 1013 626 25 0 12 chr3 56136138 56136219 -103463564 + (TTCC)n Simple_repeat Simple_repeat 4 83 0 2 1013 18325 71 13 5 chr3 56136494 56138983 -103460800 - L1VL4 LINE L1 -2 3557 1046 2 1013 324 0 0 0 chr3 56138983 56139019 -103460764 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 2 1013 1066 82 0 0 chr3 56139019 56139154 -103460629 - B1_Mus1 SINE Alu -13 135 1 2 1013 18325 93 38 7 chr3 56139154 56140174 -103459609 - L1VL4 LINE L1 -2514 1045 1 2 1013 712 326 66 9 chr3 56140178 56140497 -103459286 - MER44A DNA MER2_type -2 337 1 2 1013 353 280 56 0 chr3 56141888 56141995 -103457788 - PB1D7 SINE Alu -6 114 2 2 1013 1831 196 58 16 chr3 56143044 56143408 -103456375 - ORR1C2 LTR MaLR -5 379 1 2 1013 185 0 40 0 chr3 56144084 56144109 -103455674 + (CAA)n Simple_repeat Simple_repeat 2 27 0 2 1013 3138 45 0 5 chr3 56144265 56144649 -103455134 - L1_Mus1 LINE L1 0 6567 6186 2 1013 510 61 0 0 chr3 56145520 56145586 -103454197 + (TCTA)n Simple_repeat Simple_repeat 4 69 0 2 1013 3614 222 35 44 chr3 56145918 56146767 -103453016 + Lx6 LINE L1 6447 7288 -172 2 1013 1827 100 116 64 chr3 56147877 56148188 -103451595 + ORR1A2 LTR MaLR 1 327 0 2 1013 542 69 0 0 chr3 56148286 56148358 -103451425 + URR1B DNA MER1_type 154 225 0 2 1013 264 310 108 8 chr3 56148671 56148801 -103450982 - MER33 DNA MER1_type -2 322 180 2 1013 1094 83 0 0 chr3 56148815 56148959 -103450824 + B1_Mus1 SINE Alu 5 148 0 2 1013 303 0 64 0 chr3 56148971 56149018 -103450765 + (CAAAA)n Simple_repeat Simple_repeat 1 50 0 2 1013 258 32 0 0 chr3 56149239 56149270 -103450513 + (CA)n Simple_repeat Simple_repeat 2 32 0 2 1013 225 94 0 0 chr3 56149427 56149459 -103450324 + (TCC)n Simple_repeat Simple_repeat 3 34 0 2 1013 406 229 12 0 chr3 56149760 56149843 -103449940 - B1_Mur1 SINE Alu -1 148 65 2 1013 1627 140 37 189 chr3 56150294 56150727 -103449056 + ORR1B2 LTR MaLR 1 367 0 2 1013 419 288 63 73 chr3 56150753 56151049 -103448734 - ORR1E LTR MaLR 0 370 71 2 1013 290 266 109 50 chr3 56151081 56151200 -103448583 - MTEb LTR MaLR -251 128 3 2 1013 255 347 21 10 chr3 56151200 56151296 -103448487 - Cheshire DNA MER1_type -2133 287 191 2 1013 342 383 15 39 chr3 56151601 56151805 -103447978 - MLT1J LTR MaLR -211 301 103 2 1013 228 312 55 9 chr3 56152089 56152199 -103447584 + Tigger12A DNA MER2_type 621 735 -56 2 1013 640 246 78 13 chr3 56152398 56152629 -103447154 - RCHARR1 DNA MER1_type -1 973 728 2 1013 317 378 12 71 chr3 56152635 56152803 -103446980 + RSINE1 SINE B4 8 165 0 2 1013 2385 261 75 24 chr3 56152805 56153400 -103446383 - RCHARR1 DNA MER1_type -228 746 119 2 1013 237 33 0 0 chr3 56153400 56153430 -103446353 + (TTA)n Simple_repeat Simple_repeat 2 31 0 2 1013 2385 261 75 24 chr3 56153430 56153544 -103446239 - RCHARR1 DNA MER1_type -856 118 1 2 1013 207 0 0 0 chr3 56153721 56153744 -103446039 + (TA)n Simple_repeat Simple_repeat 1 23 0 2 1013 288 0 0 0 chr3 56153773 56153805 -103445978 + (CA)n Simple_repeat Simple_repeat 2 33 0 2 1013 789 275 6 0 chr3 56153815 56153993 -103445790 - B3A SINE B2 -16 182 4 2 1013 184 374 34 17 chr3 56155403 56155520 -103444263 - L2c LINE L2 -1 3386 3268 2 1013 1442 140 23 0 chr3 56156151 56156372 -103443411 + URR1A DNA MER1_type 1 226 0 2 1013 450 122 40 0 chr3 56156576 56156650 -103443133 - Lx3_Mus LINE L1 -661 6348 6272 2 1013 236 271 69 40 chr3 56156656 56156751 -103443032 + RMER17A LTR ERVK 347 444 -307 2 1013 877 125 23 18 chr3 56156751 56156922 -103442861 - L1Md_F2 LINE L1 -1 6581 6410 2 1013 236 271 69 40 chr3 56156922 56156999 -103442784 + RMER17A LTR ERVK 445 524 -227 2 1013 4027 81 18 11 chr3 56156999 56157608 -103442175 - Lx3_Mus LINE L1 -832 6177 5587 2 1013 5015 81 13 7 chr3 56157610 56158294 -103441489 + Lx3_Mus LINE L1 6321 7008 -1 2 1013 342 296 45 63 chr3 56158464 56158780 -103441003 - MTEa LTR MaLR 0 379 56 2 1013 335 264 73 121 chr3 56158831 56158967 -103440816 - RMER10A LTR ERVL -19 423 275 2 1013 206 62 31 0 chr3 56158967 56158999 -103440784 + (CA)n Simple_repeat Simple_repeat 2 34 0 2 1013 335 264 73 121 chr3 56158999 56159176 -103440607 - RMER10A LTR ERVL -168 274 125 2 1013 521 256 33 28 chr3 56159263 56159444 -103440339 + L1MC LINE L1 5572 5753 -580 2 1013 881 19 0 9 chr3 56160760 56160868 -103438915 + (TC)n Simple_repeat Simple_repeat 1 107 0 2 1013 348 111 0 0 chr3 56160868 56160921 -103438862 + (CA)n Simple_repeat Simple_repeat 1 54 0 2 1013 201 245 20 0 chr3 56162487 56162536 -103437247 - MIRc SINE MIR -142 126 77 2 1013 500 111 12 0 chr3 56162555 56162636 -103437147 + (TTTC)n Simple_repeat Simple_repeat 2 83 0 2 1013 373 206 214 10 chr3 56162750 56162848 -103436935 - B3 SINE B2 -97 119 2 2 1013 351 130 168 43 chr3 56163098 56163206 -103436577 - B2_Mm2 SINE B2 -8 187 47 2 1013 1150 124 6 0 chr3 56163280 56163449 -103436334 - B2_Mm1t SINE B2 -22 171 2 2 1013 351 338 92 92 chr3 56165037 56165383 -103434400 - ORR1E LTR MaLR -7 363 18 2 1013 201 229 0 0 chr3 56165602 56165637 -103434146 + (TG)n Simple_repeat Simple_repeat 2 36 0 2 1013 250 200 0 0 chr3 56165637 56165687 -103434096 + MT2B LTR ERVL 548 597 -4 2 1013 2651 234 16 7 chr3 56165692 56166354 -103433429 - ORR1E-int LTR MaLR -195 1314 513 2 1013 1302 79 10 41 chr3 56167728 56167925 -103431858 + B2_Mm2 SINE B2 2 192 -3 2 1013 407 288 79 108 chr3 56168031 56168245 -103431538 - MER3 DNA MER1_type -1 208 1 2 1013 3499 23 0 0 chr3 56168653 56169049 -103430734 - MTA_Mm LTR MaLR 0 396 1 2 1013 213 281 168 37 chr3 56169505 56169612 -103430171 - L2c LINE L2 -1 3386 3266 3 1013 214 120 39 26 chr3 56169622 56169699 -103430084 + (TA)n Simple_repeat Simple_repeat 2 79 0 3 1013 231 347 120 27 chr3 56169940 56170165 -103429618 - L2c LINE L2 -470 2949 2704 3 1013 1931 283 62 38 chr3 56170167 56170818 -103428965 - Charlie1a DNA MER1_type -517 938 270 3 1013 384 71 0 0 chr3 56170818 56170874 -103428909 + (TG)n Simple_repeat Simple_repeat 1 56 0 3 1013 1931 283 62 38 chr3 56170874 56170905 -103428878 - Charlie1a DNA MER1_type -1186 269 240 3 1013 265 305 19 95 chr3 56170883 56170988 -103428795 - RSINE1 SINE B4 -68 97 1 3 1013 454 254 66 66 chr3 56171114 56171266 -103428517 + MLT1A1 LTR MaLR 257 408 0 3 1013 2221 69 62 7 chr3 56171330 56171637 -103428146 + L1_Mus1 LINE L1 6244 6567 0 3 1013 342 98 0 0 chr3 56171678 56171729 -103428054 + (TATG)n Simple_repeat Simple_repeat 2 52 0 3 1013 270 273 0 43 chr3 56171730 56171799 -103427984 - RSINE1 SINE B4 -36 129 64 3 1013 1387 204 50 44 chr3 56171816 56172286 -103427497 - RLTR18B LTR ERVK -53 459 38 3 1013 349 222 57 80 chr3 56172302 56172352 -103427431 - RSINE1 SINE B4 -76 89 41 3 1013 3748 150 69 26 chr3 56172352 56173015 -103426768 - RLTR17 LTR ERVK 0 692 1 3 1013 349 222 57 80 chr3 56173015 56173052 -103426731 - RSINE1 SINE B4 -125 40 4 3 1013 492 165 0 0 chr3 56173057 56173148 -103426635 + (TG)n Simple_repeat Simple_repeat 1 91 0 3 1013 254 330 94 85 chr3 56173148 56173254 -103426529 - B3 SINE B2 -13 203 97 3 1013 396 0 0 0 chr3 56173256 56173300 -103426483 + (TG)n Simple_repeat Simple_repeat 1 44 0 3 1013 273 233 40 27 chr3 56173391 56173466 -103426317 - ID4 SINE ID -3 80 5 3 1013 226 231 154 0 chr3 56173786 56173864 -103425919 + Charlie21a DNA MER1_type 37 126 -1087 3 1013 360 259 0 0 chr3 56174007 56174092 -103425691 + B4 SINE B4 121 205 -87 3 1013 276 30 0 0 chr3 56174093 56174126 -103425657 + (CAA)n Simple_repeat Simple_repeat 3 35 0 3 1013 216 0 0 0 chr3 56174875 56174899 -103424884 + (A)n Simple_repeat Simple_repeat 1 24 0 3 1013 36953 7 0 1 chr3 56175271 56181058 -103418725 + L1Md_A LINE L1 1 5586 -297 3 1013 9008 5 0 0 chr3 56181058 56182054 -103417729 + L1Md_A LINE L1 5587 6582 0 3 1013 381 266 106 38 chr3 56182466 56182626 -103417157 - MTEa LTR MaLR -11 368 198 3 1013 260 146 49 0 chr3 56182626 56182658 -103417125 + polypurine Low_complexity Low_complexity 1 34 0 3 1013 952 64 47 0 chr3 56182658 56182829 -103416954 + (GA)n Simple_repeat Simple_repeat 2 180 0 3 1013 260 146 49 0 chr3 56182829 56182878 -103416905 + GA-rich Low_complexity Low_complexity 35 85 0 3 1013 721 58 110 55 chr3 56182989 56183116 -103416667 - L1Md_F2 LINE L1 -12 6570 6437 3 1013 1996 70 0 164 chr3 56183116 56183507 -103416276 + L1Md_A LINE L1 6114 6440 -142 3 1013 355 306 12 0 chr3 56184228 56184313 -103415470 - PB1D10 SINE Alu -28 89 4 3 1013 835 245 42 0 chr3 56185203 56185395 -103414388 + B3 SINE B2 6 205 -11 3 1013 298 182 36 0 chr3 56185433 56185488 -103414295 + ORR1B1 LTR MaLR 15 71 -323 3 1013 504 0 0 0 chr3 56185679 56185735 -103414048 + (TC)n Simple_repeat Simple_repeat 1 56 0 3 1013 261 0 0 0 chr3 56185735 56185763 -103414020 + (CA)n Simple_repeat Simple_repeat 1 29 0 3 1013 204 163 0 0 chr3 56185764 56185807 -103413976 + (TA)n Simple_repeat Simple_repeat 2 44 0 3 1013 273 119 0 0 chr3 56186129 56186171 -103413612 + (CAT)n Simple_repeat Simple_repeat 1 42 0 3 1013 7438 85 15 8 chr3 56186227 56187692 -103412091 - L1_Mus3 LINE L1 0 6638 5162 3 1013 7547 129 24 12 chr3 56187689 56189576 -103410207 - L1VL4 LINE L1 -1517 2042 131 3 1013 19343 168 94 18 chr3 56189604 56192562 -103407221 - Lx5 LINE L1 -5 7045 3660 3 1013 549 0 0 0 chr3 56192562 56192623 -103407160 + (TC)n Simple_repeat Simple_repeat 2 62 0 3 1013 19343 160 112 20 chr3 56192623 56195336 -103404447 - Lx5 LINE L1 -2218 3659 884 3 1013 745 283 60 22 chr3 56195705 56195889 -103403894 - B3 SINE B2 -20 196 6 3 1013 2289 197 7 45 chr3 56196583 56197029 -103402754 - RLTR11A LTR ERVK -99 429 1 3 1013 508 246 149 0 chr3 56197754 56197868 -103401915 + B3 SINE B2 7 137 -79 3 1013 28 0 0 0 chr3 56197883 56197911 -103401872 + AT_rich Low_complexity Low_complexity 1 28 0 3 1013 759 157 87 13 chr3 56198069 56198218 -103401565 - ORR1B2 LTR MaLR 0 367 208 3 1013 487 250 58 58 chr3 56198438 56198629 -103401154 + Kanga1c DNA Tc2 96 286 -443 3 1013 472 320 97 59 chr3 56198710 56199049 -103400734 - Kanga1 DNA Tc2 -504 1241 890 3 1013 257 242 101 40 chr3 56199832 56199931 -103399852 + Charlie23a DNA MER1_type 157 261 -78 3 1013 390 341 131 30 chr3 56199957 56200429 -103399354 - L1M5 LINE L1 -2216 3930 3411 3 1013 23 54 0 0 chr3 56200761 56200798 -103398985 + AT_rich Low_complexity Low_complexity 1 37 0 3 1013 3266 51 2 10 chr3 56201041 56201440 -103398343 + MTA_Mm LTR MaLR 1 396 0 3 1013 992 235 155 39 chr3 56201561 56201897 -103397886 + MTE2a LTR MaLR 1 375 -4 3 1013 874 143 242 0 chr3 56202246 56202428 -103397355 - URR1A DNA MER1_type 0 226 1 3 1013 39 74 0 0 chr3 56202716 56202797 -103396986 + AT_rich Low_complexity Low_complexity 1 81 0 3 1013 580 293 0 7 chr3 56202820 56202961 -103396822 - B1F SINE Alu -2 147 8 3 1013 201 208 21 0 chr3 56203859 56203907 -103395876 + T-rich Low_complexity Low_complexity 6 54 0 3 1013 1191 246 82 71 chr3 56204062 56204424 -103395359 - MTEa LTR MaLR -12 367 5 3 1013 1390 233 202 25 chr3 56205625 56206114 -103393669 - RMER4B LTR ERVK -9 576 1 3 1013 378 345 52 52 chr3 56206360 56206513 -103393270 + RSINE1 SINE B4 9 161 -4 3 1013 261 0 0 0 chr3 56206520 56206549 -103393234 + (CA)n Simple_repeat Simple_repeat 1 29 0 3 1013 237 405 30 1 chr3 56206771 56206884 -103392899 + MIRc SINE MIR 47 160 -102 3 1013 25 31 0 0 chr3 56207051 56207083 -103392700 + AT_rich Low_complexity Low_complexity 1 32 0 3 1013 882 248 39 15 chr3 56207110 56207315 -103392468 - B3 SINE B2 -5 211 2 3 1013 434 280 213 43 chr3 56207390 56207625 -103392158 - Lx8 LINE L1 -139 7334 7060 3 1013 1148 265 92 39 chr3 56207725 56208003 -103391780 + MTD LTR MaLR 5 290 -129 3 1013 2928 101 5 0 chr3 56208003 56208401 -103391382 - MTB LTR MaLR 0 400 1 3 1013 1148 272 85 36 chr3 56208401 56208515 -103391268 + MTD LTR MaLR 284 405 -14 3 1013 1021 202 19 46 chr3 56208963 56209223 -103390560 + Lx6 LINE L1 64 316 -7412 3 1013 853 148 13 13 chr3 56209221 56209379 -103390404 + Lx6 LINE L1 4085 4242 -1638 3 1013 1221 97 69 0 chr3 56209572 56209747 -103390036 - B2_Mm2 SINE B2 -8 187 1 3 1013 7814 145 22 82 chr3 56209846 56210638 -103389145 + Lx6 LINE L1 4190 4876 -1004 3 1013 348 24 0 0 chr3 56210638 56210679 -103389104 + (TA)n Simple_repeat Simple_repeat 1 41 0 3 1013 7814 188 53 47 chr3 56210679 56213196 -103386587 + Lx6 LINE L1 4877 7458 -2 3 1013 299 325 122 23 chr3 56213505 56213719 -103386064 - MIRb SINE MIR 0 268 34 3 1013 593 134 26 20 chr3 56216712 56216864 -103382919 + (TA)n Simple_repeat Simple_repeat 2 154 0 3 1013 2056 215 77 46 chr3 56218023 56218474 -103381309 + RLTR20B1 LTR ERVK 1 470 -93 3 1013 489 47 0 0 chr3 56218474 56218538 -103381245 + (TG)n Simple_repeat Simple_repeat 2 65 0 3 1013 2056 215 77 46 chr3 56218538 56218632 -103381151 + RLTR20B1 LTR ERVK 471 562 -1 3 1013 318 257 88 0 chr3 56219376 56219512 -103380271 - L1MA9 LINE L1 -6 6306 6159 3 1013 28 29 0 0 chr3 56220033 56220068 -103379715 + AT_rich Low_complexity Low_complexity 1 35 0 3 1013 333 198 0 23 chr3 56220078 56220166 -103379617 - Lx6 LINE L1 -54 7406 7321 3 1013 508 117 32 0 chr3 56220172 56220266 -103379517 + (GGAA)n Simple_repeat Simple_repeat 3 99 0 3 1013 1398 323 69 42 chr3 56220266 56220810 -103378973 - Lx6 LINE L1 -136 7324 6761 3 1013 1108 107 11 6 chr3 56220810 56220989 -103378794 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 3 1013 1398 323 69 42 chr3 56220989 56221011 -103378772 - Lx6 LINE L1 -700 6760 6736 3 1013 1122 90 17 6 chr3 56221011 56221189 -103378594 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 3 1013 1398 323 69 42 chr3 56221189 56221406 -103378377 - Lx6 LINE L1 -725 6735 6519 3 1013 2928 190 25 12 chr3 56221421 56222288 -103377495 - Lx6 LINE L1 -1209 6251 5362 3 1013 1432 279 79 59 chr3 56222283 56222828 -103376955 + Lx8 LINE L1 6918 7473 0 3 1013 420 143 26 0 chr3 56222864 56222941 -103376842 - Lx6 LINE L1 -518 5362 5284 3 1013 6098 92 20 2 chr3 56222946 56223742 -103376041 - L1_Mus1 LINE L1 -1 6566 5757 3 1013 8959 70 2 0 chr3 56223743 56225752 -103374031 - L1VL1 LINE L1 -3652 2231 219 3 1013 4220 160 18 6 chr3 56225762 56226540 -103373243 - Lx6 LINE L1 -592 5288 4502 3 1013 240 59 0 0 chr3 56226677 56226711 -103373072 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 3 1013 1076 109 0 0 chr3 56226711 56226848 -103372935 - B1_Mus2 SINE Alu -9 138 2 3 1013 1129 144 15 10 chr3 56226981 56227184 -103372599 - Lx6 LINE L1 -1348 4529 4326 3 1013 468 0 0 0 chr3 56227693 56227745 -103372038 + (GA)n Simple_repeat Simple_repeat 1 52 0 3 1013 405 0 0 0 chr3 56227745 56227790 -103371993 + (GAA)n Simple_repeat Simple_repeat 3 47 0 3 1013 782 249 44 8 chr3 56228761 56229012 -103370771 + L1MB3 LINE L1 5846 6105 -78 3 1013 21 57 0 0 chr3 56229372 56229407 -103370376 + AT_rich Low_complexity Low_complexity 1 35 0 3 126 9120 7 0 0 chr3 56229562 56230639 -103369144 - L1Md_T LINE L1 0 6582 5506 3 1014 366 143 0 0 chr3 56231119 56231182 -103368601 + (TC)n Simple_repeat Simple_repeat 2 64 0 3 1014 707 353 71 44 chr3 56231194 56231532 -103368251 + MLT1F2 LTR MaLR 193 539 -21 3 1014 1712 265 78 75 chr3 56231555 56232183 -103367600 + RLTR26 LTR ERVK 2 631 -11 3 1014 200 111 28 0 chr3 56232498 56232534 -103367249 + (GA)n Simple_repeat Simple_repeat 2 38 0 3 1014 600 295 125 0 chr3 56232973 56233173 -103366610 - MER2 DNA MER2_type -16 329 105 3 1014 191 36 0 35 chr3 56233404 56233433 -103366350 + (CAAAA)n Simple_repeat Simple_repeat 1 28 0 3 1014 3707 27 0 0 chr3 56233713 56234119 -103365664 - L1Md_T LINE L1 0 6582 6177 3 1014 1433 240 47 0 chr3 56234163 56234484 -103365299 + MTD LTR MaLR 3 338 -81 3 1014 1584 249 52 12 chr3 56234849 56235252 -103364531 + MTD LTR MaLR 1 419 0 3 1014 416 264 79 84 chr3 56236067 56236270 -103363513 + L1MC1 LINE L1 6030 6231 -102 3 1014 471 63 0 0 chr3 56236359 56236422 -103363361 + (CAAG)n Simple_repeat Simple_repeat 2 64 0 3 1014 715 191 380 30 chr3 56236527 56236813 -103362970 + MTD LTR MaLR 20 405 -14 3 1014 302 244 63 31 chr3 56236848 56236975 -103362808 + L1MA9 LINE L1 6177 6307 -5 3 1014 627 277 129 22 chr3 56236996 56237361 -103362422 - MLT1F-int LTR MaLR -1084 405 2 4 1014 1135 315 104 32 chr3 56237372 56237874 -103361909 - MLT1F LTR MaLR -9 539 2 4 1014 228 258 20 70 chr3 56237947 56238047 -103361736 - Cheshire DNA MER1_type -1820 600 506 4 1014 5862 70 0 23 chr3 56238605 56239345 -103360438 - L1_Mus2 LINE L1 0 6566 5844 4 1014 252 0 0 0 chr3 56241475 56241503 -103358280 + (A)n Simple_repeat Simple_repeat 1 28 0 4 1014 212 114 0 43 chr3 56241853 56241899 -103357884 + T-rich Low_complexity Low_complexity 2 45 0 4 1014 198 0 0 0 chr3 56241942 56241964 -103357819 + (TA)n Simple_repeat Simple_repeat 2 23 0 4 1014 564 239 96 13 chr3 56242859 56243016 -103356767 - B3 SINE B2 0 216 47 4 1014 247 214 113 14 chr3 56243365 56243436 -103356347 + L1MA6 LINE L1 6176 6253 -47 4 1014 294 288 76 32 chr3 56243699 56243812 -103355971 - L1M4 LINE L1 -1126 5020 4913 4 1014 2703 39 3 0 chr3 56243812 56244119 -103355664 - L1Md_F2 LINE L1 -1 6581 6274 4 1014 294 277 99 21 chr3 56244119 56244230 -103355553 - L1M4 LINE L1 -1234 4912 4787 4 1014 567 313 112 94 chr3 56244339 56244731 -103355052 - LTR16A1 LTR ERVL -55 401 3 4 1014 1032 174 86 10 chr3 56244829 56245027 -103354756 - B3 SINE B2 0 216 4 4 1014 687 317 74 43 chr3 56246995 56247321 -103352462 + MLT1A0 LTR MaLR 1 336 -29 4 1014 1426 253 74 16 chr3 56247321 56247416 -103352367 - Lx7 LINE L1 -374 7322 7228 4 1014 306 0 0 0 chr3 56247416 56247450 -103352333 + (TG)n Simple_repeat Simple_repeat 1 34 0 4 1014 1426 253 74 16 chr3 56247450 56247732 -103352051 - Lx7 LINE L1 -469 7227 6924 4 1014 3263 174 56 75 chr3 56247719 56248353 -103351430 - Lx7 LINE L1 -1564 6132 5444 4 1014 257 0 30 0 chr3 56248353 56248386 -103351397 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 4 1014 3263 164 29 95 chr3 56248386 56248602 -103351181 - Lx7 LINE L1 -437 5443 5270 4 1014 1181 44 7 0 chr3 56248602 56248739 -103351044 - B1_Mm SINE Alu -9 138 1 4 1014 3263 164 29 95 chr3 56248739 56248851 -103350932 - Lx7 LINE L1 -611 5269 5171 4 1014 362 259 8 59 chr3 56248851 56248970 -103350813 + PB1D9 SINE Alu 7 119 -1 4 1014 253 292 22 22 chr3 56249558 56249649 -103350134 - Lx8 LINE L1 -1567 5906 5816 4 1014 705 88 0 0 chr3 56249855 56249957 -103349826 + (TC)n Simple_repeat Simple_repeat 1 102 0 4 1014 283 248 148 23 chr3 56249981 56250109 -103349674 - Lx5 LINE L1 0 7050 6907 4 1014 438 374 57 27 chr3 56250176 56250509 -103349274 + ORR1E LTR MaLR 1 343 -16 4 1014 2561 204 31 29 chr3 56251438 56251786 -103347997 - RMER19A LTR ERVK 0 737 394 4 1014 2334 207 81 33 chr3 56251786 56252295 -103347488 + RMER16 LTR ERVK 1 533 0 4 1014 2561 212 32 27 chr3 56252295 56252517 -103347266 - RMER19A LTR ERVK -344 393 178 4 1014 324 33 66 16 chr3 56252952 56253013 -103346770 + (TTTTG)n Simple_repeat Simple_repeat 2 65 0 4 1014 409 71 0 0 chr3 56253013 56253069 -103346714 - B1_Mur4 SINE Alu 0 150 95 4 1014 1559 224 83 3 chr3 56253734 56254070 -103345713 + ORR1D2 LTR MaLR 3 365 -5 4 1014 21 36 0 0 chr3 56254762 56254790 -103344993 + AT_rich Low_complexity Low_complexity 1 28 0 4 1014 270 197 79 32 chr3 56254794 56254857 -103344926 - Arthur1 DNA Tip100 -1179 2768 2703 4 1014 7977 56 5 4 chr3 56254867 56255872 -103343911 - L1_Mus1 LINE L1 -1 6566 5561 4 1014 663 271 17 12 chr3 56256056 56256253 -103343530 - L1MA5 LINE L1 -2 6298 6100 4 1014 547 237 0 51 chr3 56256253 56256391 -103343392 + ORR1D2 LTR MaLR 1 131 -239 4 1014 1292 232 122 14 chr3 56256396 56256750 -103343033 - MTD LTR MaLR -5 414 23 4 1014 195 69 0 0 chr3 56256750 56256779 -103343004 + (CAA)n Simple_repeat Simple_repeat 1 29 0 4 1014 734 202 123 3 chr3 56256787 56257001 -103342782 + ORR1D2 LTR MaLR 127 370 -4 4 1014 1098 255 70 21 chr3 56257001 56257374 -103342409 - L1MA5 LINE L1 -197 6103 5713 4 1014 967 243 48 24 chr3 56257387 56257720 -103342063 - L1MA5 LINE L1 -642 5658 5318 4 1014 391 319 68 64 chr3 56257724 56257975 -103341808 - Arthur1 DNA Tip100 -1451 2496 2245 4 1014 296 282 63 16 chr3 56261649 56261775 -103338008 + MLT1N2 LTR MaLR 431 562 0 4 1014 6445 108 17 46 chr3 56262651 56263642 -103336141 + Lx3B LINE L1 6008 6969 -4 4 1014 216 184 0 0 chr3 56263658 56263707 -103336076 + A-rich Low_complexity Low_complexity 1 49 0 4 1014 216 0 0 0 chr3 56263975 56263999 -103335784 + (CAGA)n Simple_repeat Simple_repeat 3 26 0 4 1014 876 229 119 5 chr3 56264242 56264435 -103335348 - B3 SINE B2 0 216 2 4 1014 426 20 0 0 chr3 56264666 56264717 -103335066 + (TCTA)n Simple_repeat Simple_repeat 4 54 0 4 1014 1654 286 33 27 chr3 56265043 56265593 -103334190 + MER89 LTR ERV1 5 557 -2 4 1014 431 216 200 73 chr3 56265595 56265708 -103334075 - MER3 DNA MER1_type -34 175 44 4 1014 3018 54 52 0 chr3 56265708 56266077 -103333706 + RLTR10 LTR ERVK 1 388 -2 4 1014 431 216 200 73 chr3 56266077 56266113 -103333670 - MER3 DNA MER1_type -166 43 7 4 1014 255 259 17 0 chr3 56267199 56267257 -103332526 + RMER15 LTR ERVL 11 69 -506 4 1014 1499 257 134 15 chr3 56267273 56267727 -103332056 + RMER15 LTR ERVL 31 538 -37 4 1014 237 164 53 35 chr3 56268619 56268676 -103331107 + MLT1A1 LTR MaLR 81 138 -270 4 1014 372 43 0 0 chr3 56270225 56270271 -103329512 + (TA)n Simple_repeat Simple_repeat 2 47 0 4 1014 564 260 145 52 chr3 56270784 56271190 -103328593 - L1MC4a LINE L1 -2 7880 7437 4 1014 432 55 0 0 chr3 56271396 56271451 -103328332 + (CA)n Simple_repeat Simple_repeat 1 55 0 4 1014 954 100 0 0 chr3 56272587 56272727 -103327056 + (GAA)n Simple_repeat Simple_repeat 2 141 0 4 1014 1017 241 43 10 chr3 56274189 56274398 -103325385 - B3 SINE B2 0 216 1 4 1014 23 0 0 0 chr3 56274540 56274563 -103325220 + AT_rich Low_complexity Low_complexity 1 23 0 4 1014 225 0 0 0 chr3 56275098 56275123 -103324660 + (T)n Simple_repeat Simple_repeat 1 25 0 4 1014 225 0 0 0 chr3 56277225 56277250 -103322533 + (CAGA)n Simple_repeat Simple_repeat 2 26 0 4 1014 291 71 0 0 chr3 56277270 56277312 -103322471 + (CA)n Simple_repeat Simple_repeat 2 43 0 4 1014 1476 62 0 6 chr3 56277815 56277992 -103321791 - B2_Mm2 SINE B2 -19 176 1 4 1014 235 272 96 24 chr3 56278129 56278212 -103321571 - MLT1A1 LTR MaLR -319 89 1 4 1014 917 275 70 73 chr3 56278643 56278733 -103321050 + MTD LTR MaLR 1 91 -328 4 1014 207 0 0 0 chr3 56278733 56278756 -103321027 + (CAGA)n Simple_repeat Simple_repeat 4 26 0 4 1014 917 270 116 70 chr3 56278756 56279035 -103320748 + MTD LTR MaLR 92 386 -35 4 1014 513 315 6 80 chr3 56279214 56279390 -103320393 - RSINE1 SINE B4 0 165 3 4 1014 192 280 93 0 chr3 56279941 56280016 -103319767 - L4 LINE RTE -642 1387 1306 4 1014 349 339 64 29 chr3 56281561 56281734 -103318049 - MLT1A0 LTR MaLR -25 340 162 4 1014 249 83 0 0 chr3 56281803 56281839 -103317944 + (GA)n Simple_repeat Simple_repeat 1 36 0 4 1014 648 350 44 20 chr3 56282309 56282604 -103317179 + MLT1F LTR MaLR 244 545 -3 4 1014 2153 56 0 0 chr3 56283058 56283309 -103316474 + L1Md_T LINE L1 6329 6579 -3 4 1014 7684 68 18 6 chr3 56284018 56285480 -103314303 - L1Md_F2 LINE L1 -1 6581 5106 4 1014 8496 67 7 0 chr3 56285479 56286561 -103313222 + L1Md_F2 LINE L1 4038 5127 -756 4 1014 1129 97 0 43 chr3 56286567 56286751 -103313032 - B2_Mm2 SINE B2 -5 190 15 4 1014 555 255 56 32 chr3 56286935 56287220 -103312563 + MTD LTR MaLR 7 381 -38 4 1014 303 49 0 0 chr3 56287738 56287779 -103312004 + (TG)n Simple_repeat Simple_repeat 2 42 0 4 1014 1679 225 68 13 chr3 56287963 56288351 -103311432 + MTD LTR MaLR 7 405 -14 4 1014 282 243 39 39 chr3 56288892 56288969 -103310814 - ID4_ SINE ID -4 79 3 4 1014 225 0 0 0 chr3 56290325 56290350 -103309433 + (CAAA)n Simple_repeat Simple_repeat 3 27 0 4 1014 321 26 0 0 chr3 56290777 56290815 -103308968 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 4 1014 243 323 59 29 chr3 56290817 56290919 -103308864 - PB1D7 SINE Alu -12 108 4 4 1014 230 115 0 19 chr3 56290954 56291007 -103308776 + (TTTTG)n Simple_repeat Simple_repeat 3 54 0 4 1014 654 93 6 41 chr3 56291547 56291669 -103308114 - L1Md_F2 LINE L1 -310 5864 5724 4 1014 6485 52 1 5 chr3 56291669 56292425 -103307358 + L1Md_F2 LINE L1 5820 6572 -10 4 1014 275 275 64 23 chr3 56292473 56292644 -103307139 - L1MEg LINE L1 -5124 960 783 4 1014 555 248 42 47 chr3 56292660 56292817 -103306966 - RSINE1 SINE B4 0 165 11 4 1014 4764 147 97 60 chr3 56292852 56293722 -103306061 - RMER19B LTR ERVK 0 902 1 4 1014 984 228 42 0 chr3 56294678 56294871 -103304912 - B3 SINE B2 -13 203 3 4 1014 294 29 0 0 chr3 56295228 56295263 -103304520 + (CA)n Simple_repeat Simple_repeat 2 36 0 4 1014 1340 210 31 19 chr3 56296302 56296559 -103303224 - Lx5 LINE L1 -4 7046 6787 4 1014 441 0 0 0 chr3 56298253 56298302 -103301481 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 4 1014 253 0 54 0 chr3 56298831 56298868 -103300915 + (TAAAA)n Simple_repeat Simple_repeat 2 40 0 4 1014 197 299 196 49 chr3 56299196 56299481 -103300302 - L2a LINE L2 -154 3272 2946 4 1014 743 234 21 0 chr3 56299555 56299696 -103300087 + B3 SINE B2 1 144 -72 4 1014 1068 171 10 48 chr3 56299696 56299908 -103299875 - Lx4B LINE L1 -182 6876 6671 4 1014 257 281 22 109 chr3 56300125 56300217 -103299566 - MIRb SINE MIR -94 174 91 4 1014 338 250 15 53 chr3 56300498 56300629 -103299154 + CT-rich Low_complexity Low_complexity 2 127 0 4 1014 289 188 60 45 chr3 56300706 56300773 -103299010 - MurSatRep1 Unknown Unknown -1839 298 231 4 1014 35 41 0 0 chr3 56301058 56301107 -103298676 + AT_rich Low_complexity Low_complexity 1 49 0 4 1014 1392 174 12 76 chr3 56301117 56301446 -103298337 - Lx7 LINE L1 0 7696 7389 4 1014 477 0 0 0 chr3 56301480 56301533 -103298250 + (CA)n Simple_repeat Simple_repeat 2 54 0 4 1014 513 0 0 0 chr3 56301533 56301589 -103298194 + (GA)n Simple_repeat Simple_repeat 2 58 0 4 1014 219 211 0 0 chr3 56301616 56301654 -103298129 + (TG)n Simple_repeat Simple_repeat 1 38 0 4 1014 465 250 9 0 chr3 56301654 56301762 -103298021 - Lx7 LINE L1 -341 7355 7247 4 1014 2086 213 35 85 chr3 56301772 56302291 -103297492 + Lx5 LINE L1 6558 7050 0 4 1014 1331 204 108 6 chr3 56302310 56302635 -103297148 - Lx7 LINE L1 -446 7250 6893 4 1014 185 197 53 0 chr3 56302951 56303027 -103296756 + CT-rich Low_complexity Low_complexity 4 83 0 4 1014 948 296 64 48 chr3 56303959 56304625 -103295158 - Lx7 LINE L1 -1586 6110 5479 4 1014 653 357 110 31 chr3 56304652 56305130 -103294653 - Lx8 LINE L1 -180 7293 6771 4 1014 1644 238 26 24 chr3 56305130 56305509 -103294274 - ORR1C2 LTR MaLR 0 384 5 4 1014 653 357 110 31 chr3 56305509 56305678 -103294105 - Lx8 LINE L1 -703 6770 6595 4 1014 215 335 202 69 chr3 56306340 56306513 -103293270 + B3A SINE B2 1 196 -2 4 1014 269 246 0 103 chr3 56306999 56307067 -103292716 + ID2 SINE ID 9 69 -14 4 1014 222 267 123 74 chr3 56307067 56307080 -103292703 + ID_B1 SINE B4 9 93 -131 5 1014 1906 150 181 12 chr3 56307117 56307454 -103292329 + ORR1B1 LTR MaLR 1 394 0 5 1014 405 0 0 0 chr3 56307616 56307661 -103292122 + (CA)n Simple_repeat Simple_repeat 2 46 0 5 1014 240 359 0 0 chr3 56307663 56307755 -103292028 + Lx9 LINE L1 7253 7344 -300 5 1014 602 259 7 0 chr3 56309437 56309571 -103290212 - B1_Mur1 SINE Alu -2 147 5 5 1014 349 296 74 47 chr3 56309571 56309586 -103290197 - ID_B1 SINE B4 -2 222 70 5 1014 425 322 19 37 chr3 56309808 56310024 -103289759 + RLTR42-int LTR ERVK 1189 1400 -4122 5 1014 236 120 20 0 chr3 56310344 56310394 -103289389 + (TTTC)n Simple_repeat Simple_repeat 3 53 0 5 1014 554 28 14 0 chr3 56310398 56310470 -103289313 + (TCTA)n Simple_repeat Simple_repeat 4 76 0 5 1014 610 311 33 33 chr3 56311955 56312168 -103287615 + L3 LINE CR1 13 225 -4264 5 1014 1349 246 29 72 chr3 56312279 56312655 -103287128 - ORR1D2 LTR MaLR 0 370 11 5 1014 208 38 54 54 chr3 56312931 56312987 -103286796 + (CAAAA)n Simple_repeat Simple_repeat 3 58 0 5 1014 282 308 81 70 chr3 56312998 56313183 -103286600 + L3 LINE CR1 879 1065 -3424 5 1014 1026 306 59 37 chr3 56313836 56314243 -103285540 - MLT1C LTR MaLR -17 450 35 5 1014 590 277 57 38 chr3 56314383 56314593 -103285190 - B3 SINE B2 -2 214 1 5 1014 319 316 17 17 chr3 56315289 56315405 -103284378 + MLT1A1 LTR MaLR 1 116 -292 5 1014 451 241 153 31 chr3 56316625 56316788 -103282995 + Lx9 LINE L1 7286 7468 -176 5 1014 36245 36 0 0 chr3 56317525 56323174 -103276609 + L1Md_T LINE L1 1 5589 -297 5 1014 9526 6 0 3 chr3 56323174 56324173 -103275610 + L1Md_T LINE L1 5590 6585 0 5 1014 190 415 0 0 chr3 56324238 56324356 -103275427 + MIRb SINE MIR 81 198 -70 5 1014 450 283 107 18 chr3 56324435 56324604 -103275179 - MER3 DNA MER1_type -19 190 7 5 1014 25 0 0 0 chr3 56324865 56324890 -103274893 + AT_rich Low_complexity Low_complexity 1 25 0 5 1014 1368 269 30 75 chr3 56324891 56325422 -103274361 - Lx8 LINE L1 -19 7454 6948 5 1014 510 31 0 0 chr3 56325798 56325862 -103273921 + (TG)n Simple_repeat Simple_repeat 1 64 0 5 1014 4542 228 45 13 chr3 56326946 56327523 -103272260 + Lx7 LINE L1 6334 6936 -760 5 1014 1904 165 55 37 chr3 56327523 56327926 -103271857 - RMER17C LTR ERVK 0 410 1 5 1014 4542 228 45 13 chr3 56327926 56328343 -103271440 + Lx7 LINE L1 6937 7360 -336 5 1014 788 174 22 7 chr3 56328338 56328477 -103271306 + Lx7 LINE L1 7526 7666 -30 5 1014 397 200 59 0 chr3 56328479 56328564 -103271219 + MTD LTR MaLR 307 396 -23 5 1014 27 29 0 0 chr3 56329050 56329084 -103270699 + AT_rich Low_complexity Low_complexity 1 34 0 5 1014 537 16 0 0 chr3 56329223 56329285 -103270498 + (TAGA)n Simple_repeat Simple_repeat 3 64 0 5 1014 219 82 31 62 chr3 56329528 56329593 -103270190 + (TTTG)n Simple_repeat Simple_repeat 1 63 0 5 1014 879 61 9 0 chr3 56329593 56329708 -103270075 - B1_Mus1 SINE Alu -1 147 32 5 1014 459 310 63 126 chr3 56329881 56330294 -103269489 + MLT1A1 LTR MaLR 21 407 -1 5 1014 411 333 49 0 chr3 56331200 56331362 -103268421 - MLT1D LTR MaLR -58 447 278 5 1014 24 32 0 0 chr3 56331484 56331515 -103268268 + AT_rich Low_complexity Low_complexity 1 31 0 5 1014 413 282 35 7 chr3 56332808 56332951 -103266832 + HAL1-2a_MD LINE L1 2320 2466 -558 5 1014 4443 6 0 0 chr3 56333119 56333610 -103266173 + L1Md_A LINE L1 6092 6582 0 5 1014 1846 161 26 7 chr3 56333670 56333977 -103265806 + ORR1B2 LTR MaLR 1 313 -54 5 1014 1174 62 0 0 chr3 56334182 56334328 -103265455 - B1_Mm SINE Alu 0 147 2 5 1014 5734 119 16 21 chr3 56336142 56336819 -103262964 + L1VL4 LINE L1 19 693 -5609 5 1014 6117 70 0 0 chr3 56336819 56337588 -103262195 + L1_Mus1 LINE L1 5799 6567 0 5 1014 5734 77 7 9 chr3 56337588 56338483 -103261300 + L1VL4 LINE L1 694 1591 -1968 5 1014 2837 112 0 0 chr3 56338481 56338908 -103260875 + L1_Mm LINE L1 5442 5868 -15 5 1014 273 89 0 0 chr3 56338908 56338953 -103260830 + (A)n Simple_repeat Simple_repeat 1 45 0 5 1014 3456 115 2 6 chr3 56338954 56339462 -103260321 + L1_Mus4 LINE L1 6125 6630 -6 5 1014 901 204 50 15 chr3 56340165 56340364 -103259419 + B3 SINE B2 1 206 -10 5 1014 2141 78 49 61 chr3 56341021 56341348 -103258435 - ORR1A2 LTR MaLR 0 327 5 5 1014 1050 279 25 35 chr3 56341820 56342106 -103257677 - B4 SINE B4 -8 284 2 5 1014 36405 42 1 3 chr3 56342779 56349181 -103250602 - L1Md_T LINE L1 0 6585 100 5 1014 412 99 14 14 chr3 56349260 56349332 -103250451 + (TCCC)n Simple_repeat Simple_repeat 2 73 0 5 1014 32802 67 0 8 chr3 56350394 56351687 -103248096 - L1Md_F2 LINE L1 -4 6578 5304 5 1014 5234 14 0 0 chr3 56351687 56352274 -103247509 - L1Md_A LINE L1 0 6582 5996 5 1014 32802 81 1 8 chr3 56352274 56357275 -103242508 - L1Md_F2 LINE L1 -580 5303 331 5 1014 235 263 49 62 chr3 56357771 56357852 -103241931 - PB1D10 SINE Alu -1 116 37 5 1014 438 250 152 20 chr3 56357979 56358130 -103241653 - Tigger7 DNA MER2_type -5 2486 2316 5 1014 251 304 76 0 chr3 56358157 56358236 -103241547 - Tigger7 DNA MER2_type -2373 118 34 5 1014 869 170 26 35 chr3 56358911 56359103 -103240680 + ORR1D1 LTR MaLR 8 170 -159 5 126 7189 56 7 10 chr3 56360001 56361399 -103238384 - L1Md_F2 LINE L1 -19 6563 5171 5 1015 386 298 91 8 chr3 56361781 56361913 -103237870 + B3A SINE B2 1 143 -55 5 1015 222 37 0 0 chr3 56361917 56361944 -103237839 + (CA)n Simple_repeat Simple_repeat 2 28 0 5 1015 25 51 0 0 chr3 56361944 56361983 -103237800 + AT_rich Low_complexity Low_complexity 1 39 0 5 1015 480 266 152 31 chr3 56362067 56362330 -103237453 - MLT1D LTR MaLR -33 472 192 5 1015 3541 167 16 12 chr3 56362731 56363375 -103236408 - RMER6A LTR ERVK -2 754 109 5 1015 711 244 33 44 chr3 56363923 56364103 -103235680 + B3 SINE B2 1 178 -38 5 1015 411 21 0 0 chr3 56364204 56364252 -103235531 + (TG)n Simple_repeat Simple_repeat 2 49 0 5 1015 386 344 37 6 chr3 56365076 56365240 -103234543 + L3 LINE CR1 2007 2175 -2314 5 1015 1943 21 0 0 chr3 56365603 56365836 -103233947 + L1Md_A LINE L1 5354 5586 -297 5 1015 8447 33 1 0 chr3 56365837 56366831 -103232952 + L1Md_A LINE L1 5588 6582 0 5 1015 392 376 24 55 chr3 56366834 56367087 -103232696 - B4 SINE B4 0 292 48 5 1015 23728 150 24 3 chr3 56367542 56370971 -103228812 + Lx2 LINE L1 357 3846 -2037 5 1015 246 32 0 0 chr3 56370971 56371002 -103228781 + (CAAA)n Simple_repeat Simple_repeat 1 31 0 5 1015 23728 141 24 3 chr3 56371002 56373731 -103226052 + Lx2 LINE L1 3847 6645 -352 5 1015 969 126 131 0 chr3 56373720 56373903 -103225880 + Lx2 LINE L1 6765 6971 -26 5 1015 597 28 0 0 chr3 56373904 56373975 -103225808 + (TAGA)n Simple_repeat Simple_repeat 4 74 0 5 1015 490 353 98 60 chr3 56374070 56374507 -103225276 + MTE-int LTR MaLR 133 586 -994 5 1015 1368 67 0 0 chr3 56374753 56374933 -103224850 + (TTC)n Simple_repeat Simple_repeat 1 180 0 5 1015 1144 64 0 0 chr3 56374933 56375074 -103224709 - B1_Mus1 SINE Alu -6 142 2 5 1015 306 50 0 0 chr3 56375096 56375136 -103224647 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 5 1015 565 266 154 37 chr3 56375181 56375427 -103224356 - RMER15 LTR ERVL -24 551 277 5 1015 840 198 148 0 chr3 56375510 56375692 -103224091 - B3 SINE B2 -6 210 2 5 1015 333 323 119 26 chr3 56375732 56375926 -103223857 + MTE-int LTR MaLR 1075 1286 -294 5 1015 200 294 29 0 chr3 56376014 56376082 -103223701 + MIRb SINE MIR 151 220 -48 5 1015 394 276 30 7 chr3 56376916 56377051 -103222732 + Lx8 LINE L1 6922 7059 -414 5 1015 180 77 0 0 chr3 56378107 56378133 -103221650 + (TC)n Simple_repeat Simple_repeat 1 26 0 5 1015 241 324 111 76 chr3 56378930 56379271 -103220512 - ORR1D2 LTR MaLR -13 357 5 5 1015 306 0 0 0 chr3 56379320 56379354 -103220429 + (TC)n Simple_repeat Simple_repeat 2 35 0 5 1015 1166 206 6 3 chr3 56379356 56379673 -103220110 - GSAT_MM Satellite Satellite -130 341 24 5 1015 354 129 0 0 chr3 56379673 56379735 -103220048 + (TC)n Simple_repeat Simple_repeat 2 63 0 5 1015 41 21 0 0 chr3 56379735 56379783 -103220000 + AT_rich Low_complexity Low_complexity 1 48 0 5 1015 2185 129 54 36 chr3 56379788 56380174 -103219609 - Lx3B LINE L1 -13 6960 6568 5 1015 1080 248 98 17 chr3 56380355 56380765 -103219018 + Lx2B LINE L1 6554 6996 -4 5 1015 304 244 0 25 chr3 56381311 56381391 -103218392 + Lx4B LINE L1 6558 6635 -423 5 1015 825 181 67 0 chr3 56381391 56381540 -103218243 - RLTR25A LTR ERVK -942 161 3 5 1015 207 194 0 0 chr3 56382031 56382067 -103217716 + A-rich Low_complexity Low_complexity 5 40 0 5 1015 3340 169 150 140 chr3 56383089 56384105 -103215678 + RLTR25B LTR ERVK 3 1028 0 5 1015 30 59 0 0 chr3 56384213 56384264 -103215519 + AT_rich Low_complexity Low_complexity 1 51 0 5 1015 299 175 186 49 chr3 56384724 56384826 -103214957 + ORR1B2-int LTR MaLR 1188 1303 -206 5 1015 742 203 159 15 chr3 56384958 56384983 -103214800 + ORR1B2-int LTR MaLR 1287 1316 -193 5 1015 4746 104 6 10 chr3 56384983 56385664 -103214119 + RLTR33 LTR ERVK 1 678 0 5 1015 742 203 159 15 chr3 56385664 56385833 -103213950 + ORR1B2-int LTR MaLR 1317 1509 0 5 1015 1688 178 70 37 chr3 56385833 56386188 -103213595 + ORR1B2 LTR MaLR 1 367 0 5 1015 1352 75 11 26 chr3 56386458 56386649 -103213134 - B2_Mm2 SINE B2 -5 190 3 5 1015 683 270 63 0 chr3 56386751 56386910 -103212873 + B3 SINE B2 2 170 -46 5 1015 1275 118 0 25 chr3 56387030 56387230 -103212553 - B2_Mm2 SINE B2 0 195 1 5 1015 284 257 81 0 chr3 56387317 56387391 -103212392 + RSINE1 SINE B4 66 145 -20 5 1015 222 37 0 0 chr3 56388044 56388071 -103211712 + (TTA)n Simple_repeat Simple_repeat 1 27 0 5 1015 218 333 32 0 chr3 56388309 56388372 -103211411 - B3A SINE B2 -131 67 3 5 1015 30 45 0 0 chr3 56388552 56388596 -103211187 + AT_rich Low_complexity Low_complexity 1 44 0 5 1015 267 103 0 0 chr3 56388632 56388671 -103211112 + (CA)n Simple_repeat Simple_repeat 2 40 0 5 1015 29 0 0 0 chr3 56388726 56388755 -103211028 + AT_rich Low_complexity Low_complexity 1 29 0 5 1015 25 0 0 0 chr3 56388945 56388970 -103210813 + AT_rich Low_complexity Low_complexity 1 25 0 5 1015 419 390 13 88 chr3 56389012 56389136 -103210647 + Tigger7 DNA MER2_type 1 122 -2369 5 1015 272 316 0 0 chr3 56389136 56389215 -103210568 - ID4 SINE ID -4 79 1 5 1015 419 315 121 79 chr3 56389215 56389341 -103210442 + Tigger7 DNA MER2_type 123 259 -80 5 1015 294 29 0 0 chr3 56389341 56389376 -103210407 + (CA)n Simple_repeat Simple_repeat 2 36 0 6 1015 243 315 121 79 chr3 56389376 56389414 -103210369 + MER44A DNA MER2_type 260 301 -38 6 1015 487 273 60 125 chr3 56389540 56389724 -103210059 - B3A SINE B2 -24 174 3 6 1015 474 219 0 186 chr3 56390534 56390674 -103209109 + B1_Mur1 SINE Alu 10 123 -26 6 1015 848 205 121 0 chr3 56392082 56392272 -103207511 + B3 SINE B2 1 213 -3 6 1015 21 0 0 0 chr3 56392273 56392294 -103207489 + AT_rich Low_complexity Low_complexity 1 21 0 6 1015 977 234 61 83 chr3 56392819 56392871 -103206912 - MT2B LTR ERVL 0 601 561 6 1015 471 18 0 0 chr3 56392871 56392927 -103206856 + (TCTA)n Simple_repeat Simple_repeat 3 58 0 6 1015 977 220 81 131 chr3 56392927 56393297 -103206486 - MT2B LTR ERVL -41 560 64 6 1015 913 200 84 0 chr3 56393304 56393494 -103206289 + B3 SINE B2 1 206 -10 6 1015 234 303 15 15 chr3 56393503 56393570 -103206213 + RSINE1 SINE B4 82 148 -17 6 1015 249 33 0 0 chr3 56393588 56393618 -103206165 + (CA)n Simple_repeat Simple_repeat 1 30 0 6 1015 324 0 0 0 chr3 56393618 56393653 -103206130 + (GA)n Simple_repeat Simple_repeat 2 37 0 6 1015 221 311 0 0 chr3 56393770 56393815 -103205968 + MER91A DNA Tip100 112 156 -40 6 1015 191 342 40 57 chr3 56394371 56394561 -103205222 - L2b LINE L2 -8 3367 3205 6 1015 189 0 0 0 chr3 56394586 56394607 -103205176 + (TTG)n Simple_repeat Simple_repeat 3 23 0 6 1015 288 53 0 0 chr3 56394607 56394645 -103205138 + (TGG)n Simple_repeat Simple_repeat 1 38 0 6 1015 260 269 45 0 chr3 56394651 56394718 -103205065 - ID SINE ID -144 80 11 6 1015 628 290 7 7 chr3 56394728 56394874 -103204909 - B1F SINE Alu -1 148 3 6 1015 248 400 16 122 chr3 56394874 56394910 -103204873 - B4A SINE B4 -60 212 65 6 1015 624 27 0 0 chr3 56394918 56394992 -103204791 + (GA)n Simple_repeat Simple_repeat 1 74 0 6 1015 198 103 0 0 chr3 56395947 56395976 -103203807 + (TG)n Simple_repeat Simple_repeat 2 30 0 6 1015 630 155 0 10 chr3 56396178 56396282 -103203501 - B3 SINE B2 -107 109 7 6 1015 818 188 6 0 chr3 56396905 56397075 -103202708 + CT-rich Low_complexity Low_complexity 3 173 0 6 1015 522 0 0 0 chr3 56397092 56397150 -103202633 + (TC)n Simple_repeat Simple_repeat 1 58 0 6 1015 228 35 0 0 chr3 56397165 56397194 -103202589 + (TGG)n Simple_repeat Simple_repeat 1 29 0 6 1015 722 271 28 14 chr3 56397442 56397655 -103202128 + ID_B1 SINE B4 1 216 -8 6 1015 720 161 6 12 chr3 56397656 56397820 -103201963 + GA-rich Low_complexity Low_complexity 3 165 0 6 1015 575 172 0 15 chr3 56397868 56397998 -103201785 + GA-rich Low_complexity Low_complexity 2 129 0 6 1015 873 319 109 31 chr3 56398863 56399311 -103200472 - MER74B LTR ERVL -67 555 73 6 1015 805 265 60 0 chr3 56399311 56399496 -103200287 + B4A SINE B4 2 197 -95 6 1015 348 24 0 0 chr3 56399565 56399606 -103200177 + (TC)n Simple_repeat Simple_repeat 1 41 0 6 1015 292 341 63 107 chr3 56399895 56400213 -103199570 + MLT1A LTR MaLR 63 366 -8 6 1015 36104 47 15 16 chr3 56401714 56407540 -103192243 - L1Md_T LINE L1 0 6585 587 6 1015 226 316 59 59 chr3 56407540 56407641 -103192142 - RLTR45 LTR ERVK -378 104 4 6 1015 36104 47 15 16 chr3 56407641 56408087 -103191696 - L1Md_T LINE L1 0 586 126 6 1015 234 0 0 0 chr3 56408690 56408716 -103191067 + (CA)n Simple_repeat Simple_repeat 2 27 0 6 1015 368 155 93 88 chr3 56408999 56409105 -103190678 - B1_Mur4 SINE Alu -5 115 12 6 1015 25 0 0 0 chr3 56409372 56409397 -103190386 + AT_rich Low_complexity Low_complexity 1 25 0 6 1015 497 360 31 16 chr3 56409402 56409594 -103190189 - B3A SINE B2 0 198 4 6 1015 1601 218 42 24 chr3 56409585 56409918 -103189865 + MTC LTR MaLR 1 339 -82 6 1015 320 272 11 21 chr3 56409920 56410014 -103189769 + RLTR24 LTR ERV1 1 93 -436 6 1015 343 162 24 108 chr3 56410305 56410388 -103189395 + MTC LTR MaLR 338 413 -8 6 1015 3855 196 64 10 chr3 56410388 56411158 -103188625 + MTC-int LTR MaLR 1 811 -447 6 1015 29490 87 11 28 chr3 56411170 56412804 -103186979 + L1Md_F2 LINE L1 217 1967 -3916 6 1015 210 37 0 0 chr3 56412804 56412831 -103186952 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 6 1015 29490 82 9 4 chr3 56412831 56416427 -103183356 + L1Md_F2 LINE L1 1968 5584 -299 6 1015 7025 90 11 7 chr3 56416427 56417419 -103182364 + L1Md_F2 LINE L1 5587 6582 0 6 1015 757 240 7 14 chr3 56417421 56417569 -103182214 + MTC-int LTR MaLR 797 943 -315 6 1015 963 268 57 24 chr3 56417924 56418348 -103181435 + Lx5 LINE L1 892 1329 -6399 6 1015 421 297 73 69 chr3 56418362 56418608 -103181175 - RMER2 LTR ERV1 -13 554 308 6 1015 11042 174 33 21 chr3 56418753 56421274 -103178509 + Lx5 LINE L1 1327 3876 -2001 6 1015 1117 122 6 6 chr3 56421278 56421451 -103178332 - ORR1A4 LTR MaLR -8 321 149 6 1015 3851 50 0 0 chr3 56421451 56422104 -103177679 - L1_Mus1 LINE L1 -492 6075 5423 6 1015 3902 57 0 0 chr3 56422104 56422580 -103177203 + L1_Mus1 LINE L1 6092 6567 0 6 1015 440 72 14 0 chr3 56422597 56422666 -103177117 + (CAAAA)n Simple_repeat Simple_repeat 2 71 0 6 1015 890 130 6 90 chr3 56422666 56422843 -103176940 - ORR1A4 LTR MaLR -167 162 1 6 1015 9299 171 42 4 chr3 56422843 56424163 -103175620 + Lx5 LINE L1 3872 5237 -640 6 1015 288 0 0 0 chr3 56424163 56424195 -103175588 + (TG)n Simple_repeat Simple_repeat 1 32 0 6 1015 9299 171 42 4 chr3 56424195 56424808 -103174975 + Lx5 LINE L1 5238 5885 -1165 6 1015 3072 58 8 10 chr3 56424808 56425205 -103174578 + MTA_Mm LTR MaLR 1 396 0 6 1015 4876 205 38 14 chr3 56425205 56426016 -103173767 + Lx5 LINE L1 5886 6722 -328 6 1015 404 290 153 139 chr3 56426021 56426510 -103173273 - RLTR18 LTR ERVK -120 496 1 6 1015 184 312 50 86 chr3 56426687 56426827 -103172956 + L2 LINE L2 1423 1557 -1862 6 1015 405 0 0 0 chr3 56427210 56427255 -103172528 + (TC)n Simple_repeat Simple_repeat 2 46 0 6 1015 900 74 0 0 chr3 56427255 56427375 -103172408 + (TA)n Simple_repeat Simple_repeat 2 122 0 6 1015 441 0 0 0 chr3 56427925 56427974 -103171809 + (CA)n Simple_repeat Simple_repeat 2 50 0 6 1015 405 172 0 0 chr3 56428050 56428172 -103171611 + (TA)n Simple_repeat Simple_repeat 1 122 0 6 1015 1597 191 101 25 chr3 56428274 56428629 -103171154 - MTC LTR MaLR -39 382 1 6 1015 2665 162 30 45 chr3 56428629 56429160 -103170623 - MTC-int LTR MaLR 0 1258 736 6 1015 1764 194 26 34 chr3 56429186 56429541 -103170242 - MTC LTR MaLR 0 421 68 6 1015 6334 61 0 2 chr3 56429541 56430343 -103169440 - L1Md_F2 LINE L1 0 6582 5783 6 1015 1764 194 26 34 chr3 56430343 56430365 -103169418 - MTC LTR MaLR -354 67 47 6 1015 476 254 42 28 chr3 56430378 56430520 -103169263 - Lx5 LINE L1 -38 7012 6869 6 1015 871 167 201 0 chr3 56430562 56430736 -103169047 - B3 SINE B2 -7 209 1 6 1015 493 125 12 12 chr3 56430737 56430818 -103168965 - MTC LTR MaLR -340 81 1 6 1015 270 233 137 0 chr3 56431627 56431700 -103168083 - MTEb LTR MaLR -3 376 294 6 1015 22 56 0 0 chr3 56433022 56433058 -103166725 + AT_rich Low_complexity Low_complexity 1 36 0 6 1015 296 48 24 0 chr3 56433540 56433582 -103166201 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 6 1015 512 30 15 0 chr3 56434096 56434162 -103165621 + (GGAA)n Simple_repeat Simple_repeat 3 69 0 6 1015 21 57 0 0 chr3 56434178 56434213 -103165570 + AT_rich Low_complexity Low_complexity 1 35 0 6 1015 234 0 0 0 chr3 56434334 56434360 -103165423 + (T)n Simple_repeat Simple_repeat 1 26 0 6 1015 484 42 14 14 chr3 56434622 56434694 -103165089 + (TG)n Simple_repeat Simple_repeat 2 73 0 6 1015 786 199 137 6 chr3 56434727 56434909 -103164874 + B3 SINE B2 5 210 -6 6 1015 628 179 0 0 chr3 56435736 56435841 -103163942 + ORR1B2 LTR MaLR 1 105 -262 6 1015 934 212 65 49 chr3 56435841 56436222 -103163561 - RLTRETN_Mm LTR ERVK 0 393 1 6 1015 1426 201 50 67 chr3 56436222 56436480 -103163303 + ORR1B2 LTR MaLR 116 367 0 6 1015 519 17 0 0 chr3 56436509 56436569 -103163214 + (CA)n Simple_repeat Simple_repeat 1 60 0 6 1015 477 84 0 0 chr3 56437034 56437105 -103162678 + (CA)n Simple_repeat Simple_repeat 1 71 0 6 1015 2211 164 35 8 chr3 56437698 56438073 -103161710 - MTC LTR MaLR -7 414 30 6 1015 1458 77 58 0 chr3 56438073 56438281 -103161502 + MT2B LTR ERVL 1 220 -381 6 1015 924 152 77 24 chr3 56438268 56438437 -103161346 - ORR1B2 LTR MaLR -189 178 1 6 1015 1128 214 49 37 chr3 56439265 56439689 -103160094 - MT2A LTR ERVL 0 601 14 6 1015 522 265 128 33 chr3 56439947 56440220 -103159563 + Lx8 LINE L1 7165 7463 -10 6 1015 1708 207 67 0 chr3 56440568 56440925 -103158858 - ORR1C2 LTR MaLR 0 384 4 6 1015 235 0 28 28 chr3 56441350 56441386 -103158397 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 6 1015 257 316 61 73 chr3 56441392 56441474 -103158309 - ID4_ SINE ID 0 83 3 6 1015 848 256 20 5 chr3 56441884 56442080 -103157703 + B3 SINE B2 3 201 -15 6 1015 663 282 59 115 chr3 56442203 56442717 -103157066 - RLTR11A2 LTR ERVK -24 504 1 6 1015 1591 218 11 26 chr3 56443551 56443900 -103155883 + RLTR14 LTR ERV1 35 378 -4 6 1015 384 136 0 17 chr3 56443942 56444002 -103155781 + RMER13B LTR ERVK 329 387 -521 6 1015 23 0 0 0 chr3 56444002 56444025 -103155758 + AT_rich Low_complexity Low_complexity 1 23 0 6 1015 314 61 20 0 chr3 56445616 56445665 -103154118 + (TTCA)n Simple_repeat Simple_repeat 4 53 0 6 1015 640 274 7 0 chr3 56445678 56445824 -103153959 - RSINE1 SINE B4 -16 149 3 6 1015 303 93 0 0 chr3 56447902 56447945 -103151838 + (TTCC)n Simple_repeat Simple_repeat 3 45 0 6 1015 249 196 0 0 chr3 56448032 56448088 -103151695 + (CATA)n Simple_repeat Simple_repeat 4 59 0 6 1015 1480 234 50 8 chr3 56448673 56449073 -103150710 - MTD LTR MaLR -2 417 1 6 1015 342 0 0 0 chr3 56449088 56449126 -103150657 + (CAA)n Simple_repeat Simple_repeat 2 39 0 6 1015 191 222 0 22 chr3 56449209 56449255 -103150528 - MIRc SINE MIR -147 121 77 6 1015 207 186 0 0 chr3 56449348 56449391 -103150392 + (CATA)n Simple_repeat Simple_repeat 4 46 0 6 1015 698 46 18 0 chr3 56451681 56451790 -103147993 - L1Md_F3 LINE L1 -3 6581 6471 6 1015 568 216 14 0 chr3 56452408 56452556 -103147227 + CT-rich Low_complexity Low_complexity 2 151 0 6 1015 3504 95 4 6 chr3 56452564 56453052 -103146731 - L1_Mus4 LINE L1 -8 6628 6142 6 1015 566 326 34 69 chr3 56453134 56453338 -103146445 - B3A SINE B2 0 216 20 6 1015 537 198 57 52 chr3 56453343 56453575 -103146208 + MT2A LTR ERVL 16 251 -224 6 1015 360 0 0 0 chr3 56453597 56453637 -103146146 + (CA)n Simple_repeat Simple_repeat 1 40 0 6 1015 300 95 0 0 chr3 56453640 56453682 -103146101 + MT2B2 LTR ERVL 543 584 0 6 1015 729 275 52 5 chr3 56454629 56454823 -103144960 - B3 SINE B2 -10 206 4 7 1015 1897 279 72 8 chr3 56454927 56455528 -103144255 - RCHARR1 DNA MER1_type -335 639 1 7 1015 395 355 6 0 chr3 56456756 56456925 -103142858 + (TG)n Simple_repeat Simple_repeat 2 171 0 7 1015 1259 119 5 5 chr3 56456966 56457152 -103142631 - B2_Mm2 SINE B2 -8 187 2 7 1015 1462 191 30 50 chr3 56457588 56457951 -103141832 + RMER17C LTR ERVK 42 397 -13 7 1015 5412 101 62 14 chr3 56457967 56458804 -103140979 - L1_Mus4 LINE L1 0 6636 5760 7 1015 541 163 0 196 chr3 56458804 56459003 -103140780 - L1_Mur2 LINE L1 -562 5315 5156 7 1015 3234 75 73 6 chr3 56459845 56460312 -103139471 - Lx3_Mus LINE L1 -8 7001 6504 7 1015 539 356 11 65 chr3 56460714 56460975 -103138808 - MLT1F2 LTR MaLR 0 560 314 7 1015 266 344 0 0 chr3 56461022 56461086 -103138697 - B3 SINE B2 -152 64 1 7 1015 6665 132 17 32 chr3 56461158 56462295 -103137488 - Lx3B LINE L1 -4 6969 5850 7 1015 1098 279 130 37 chr3 56462348 56463073 -103136710 - L1MB3 LINE L1 -28 6155 5364 7 1015 1444 250 92 52 chr3 56463090 56463491 -103136292 - MTD LTR MaLR -2 417 1 7 1015 377 304 49 23 chr3 56463539 56463802 -103135981 - L1MB3 LINE L1 -865 5275 5006 7 1015 277 277 228 0 chr3 56465085 56465186 -103134597 - B1F1 SINE Alu -25 124 1 7 1015 370 281 129 18 chr3 56465753 56465916 -103133867 + MIRb SINE MIR 74 254 -14 7 1015 241 319 111 63 chr3 56466317 56466588 -103133195 + ORR1E LTR MaLR 59 342 -17 7 1015 297 0 0 0 chr3 56467042 56467075 -103132708 + (TC)n Simple_repeat Simple_repeat 2 34 0 7 1015 405 0 0 0 chr3 56467075 56467119 -103132664 + (TG)n Simple_repeat Simple_repeat 2 46 0 7 1015 232 314 50 18 chr3 56467405 56467544 -103132239 - MIR SINE MIR 0 268 119 7 1015 651 283 107 57 chr3 56468964 56469245 -103130538 + ORR1E LTR MaLR 19 313 -46 7 1015 270 267 165 11 chr3 56469367 56469458 -103130325 + B1F1 SINE Alu 5 109 -40 7 1015 264 122 0 0 chr3 56469485 56469526 -103130257 + (TAA)n Simple_repeat Simple_repeat 2 42 0 7 1015 213 39 0 0 chr3 56469938 56469964 -103129819 + (TG)n Simple_repeat Simple_repeat 1 26 0 7 1015 1698 99 134 14 chr3 56470356 56470632 -103129151 + RLTR27 LTR ERVK 1 309 0 7 1015 1130 282 17 51 chr3 56470951 56471037 -103128746 + B4A SINE B4 5 85 -207 7 1015 310 21 0 41 chr3 56471037 56471086 -103128697 + (CCAA)n Simple_repeat Simple_repeat 1 47 0 7 1015 1130 282 17 51 chr3 56471086 56471294 -103128489 + B4A SINE B4 86 289 -3 7 1015 4608 126 20 56 chr3 56471312 56472173 -103127610 + L1_Mus3 LINE L1 5819 6638 0 7 1015 342 309 31 0 chr3 56472451 56472548 -103127235 - B3A SINE B2 0 198 99 7 1015 516 297 90 66 chr3 56472630 56473052 -103126731 - Tigger13a DNA MER2_type -112 659 228 7 1015 4232 35 20 0 chr3 56475443 56475950 -103123833 - L1Md_F3 LINE L1 0 6584 6068 7 1015 3440 30 45 0 chr3 56475950 56476521 -103123262 + L1Md_F3 LINE L1 5421 6010 -572 7 1015 240 357 83 23 chr3 56476521 56476653 -103123130 + BLACKJACK DNA AcHobo 90 229 -2715 7 1015 350 310 75 27 chr3 56476686 56476832 -103122951 + BLACKJACK DNA AcHobo 230 382 -2562 7 1015 267 316 105 0 chr3 56476880 56476994 -103122789 + BLACKJACK DNA AcHobo 510 635 -2309 7 1015 229 330 120 50 chr3 56477105 56477347 -103122436 + BLACKJACK DNA AcHobo 686 944 -2000 7 1015 1151 217 5 0 chr3 56477382 56477585 -103122198 + B3 SINE B2 7 210 -6 7 1015 342 346 99 38 chr3 56477628 56477970 -103121813 + BLACKJACK DNA AcHobo 1008 1370 -1574 7 1015 598 287 121 48 chr3 56478309 56478558 -103121225 + MER21B LTR ERV1 549 815 -48 7 1015 319 237 52 13 chr3 56478655 56478732 -103121051 + RSINE1 SINE B4 44 123 -42 7 1015 342 0 0 0 chr3 56478732 56478770 -103121013 + (TG)n Simple_repeat Simple_repeat 1 38 0 7 1015 244 188 0 28 chr3 56478987 56479058 -103120725 + GA-rich Low_complexity Low_complexity 2 70 0 7 1015 24 0 0 0 chr3 56479979 56480003 -103119780 + AT_rich Low_complexity Low_complexity 1 24 0 7 1015 324 248 25 135 chr3 56480128 56480291 -103119492 - RMER1C Other Other -90 1252 1108 7 1015 843 333 22 8 chr3 56480187 56480556 -103119227 - Lx8 LINE L1 -153 7320 6947 7 1015 533 249 32 103 chr3 56480557 56480759 -103119024 - ORR1E LTR MaLR 0 419 175 7 1015 773 40 0 0 chr3 56480760 56480859 -103118924 - L1_Mm LINE L1 -1032 4851 4753 7 1015 1876 61 0 15 chr3 56480855 56481120 -103118663 + L1Md_F2 LINE L1 6274 6534 -48 7 1015 891 53 0 0 chr3 56481120 56481233 -103118550 + (GAAA)n Simple_repeat Simple_repeat 4 116 0 7 1015 323 289 89 73 chr3 56481243 56481366 -103118417 - ORR1E LTR MaLR -245 125 1 7 1015 285 294 93 64 chr3 56481792 56482028 -103117755 + MIR SINE MIR 6 248 -14 7 1015 750 266 64 0 chr3 56482274 56482477 -103117306 - B3 SINE B2 0 216 1 7 1015 198 0 0 0 chr3 56482688 56482710 -103117073 + (T)n Simple_repeat Simple_repeat 1 22 0 7 1015 540 30 0 0 chr3 56483592 56483658 -103116125 + (TG)n Simple_repeat Simple_repeat 2 67 0 7 1015 1190 233 212 0 chr3 56483831 56484175 -103115608 + MTD LTR MaLR 3 419 0 7 1015 279 360 70 0 chr3 56484266 56484366 -103115417 - ID_B1 SINE B4 -26 198 92 7 1015 387 0 0 0 chr3 56484625 56484668 -103115115 + (TG)n Simple_repeat Simple_repeat 2 44 0 7 1015 312 354 25 67 chr3 56485426 56485500 -103114283 + MLT1G LTR MaLR 3 69 -510 7 1015 1061 75 69 80 chr3 56485500 56485688 -103114095 + B2_Mm2 SINE B2 2 187 -8 7 1015 323 360 22 62 chr3 56485688 56485878 -103113905 + MLT1G LTR MaLR 35 231 -348 7 1015 232 319 58 153 chr3 56485998 56486130 -103113653 + MLT1G LTR MaLR 371 484 -64 7 1015 1171 41 7 0 chr3 56486130 56486275 -103113508 - B1_Mus1 SINE Alu -1 147 2 7 1015 242 215 63 34 chr3 56486275 56486339 -103113444 + MLT1G LTR MaLR 485 578 -1 7 1015 322 341 17 35 chr3 56486340 56486513 -103113270 + ERVL-E-int LTR ERVL 2722 2891 -2776 7 1015 24 0 0 0 chr3 56487606 56487630 -103112153 + AT_rich Low_complexity Low_complexity 1 24 0 7 1015 450 321 22 104 chr3 56487948 56488216 -103111567 - L1MEb LINE L1 -5537 533 288 7 1015 757 241 78 12 chr3 56488516 56488705 -103111078 + B3 SINE B2 3 194 -1 7 1015 694 311 86 34 chr3 56488930 56489262 -103110521 + MLT2C1 LTR ERVL 39 380 -17 7 1015 466 163 103 11 chr3 56489352 56489439 -103110344 + ORR1C2 LTR MaLR 28 122 -252 7 1015 2498 187 124 38 chr3 56489440 56489995 -103109788 + RLTR18 LTR ERVK 9 611 -5 7 1015 1068 235 52 12 chr3 56490000 56490250 -103109533 + ORR1C2 LTR MaLR 125 384 0 7 1015 21 0 0 0 chr3 56490311 56490332 -103109451 + AT_rich Low_complexity Low_complexity 1 21 0 7 1015 414 0 0 0 chr3 56490640 56490686 -103109097 + (CA)n Simple_repeat Simple_repeat 1 46 0 7 1015 530 104 0 10 chr3 56490686 56490783 -103109000 + (GA)n Simple_repeat Simple_repeat 1 96 0 7 1015 260 53 26 0 chr3 56491908 56491946 -103107837 + (TA)n Simple_repeat Simple_repeat 1 39 0 7 126 423 0 0 0 chr3 56492002 56492049 -103107734 + (GA)n Simple_repeat Simple_repeat 2 48 0 7 1016 497 290 29 7 chr3 56492263 56492402 -103107381 + MER5A DNA MER1_type 8 149 -40 7 1016 624 250 8 0 chr3 56492471 56492603 -103107180 - ID_B1 SINE B4 0 224 92 7 1016 1652 157 48 66 chr3 56492604 56492939 -103106844 - ORR1A4 LTR MaLR 0 329 1 7 1016 25 0 0 0 chr3 56492953 56492978 -103106805 + AT_rich Low_complexity Low_complexity 1 25 0 7 1016 2149 289 97 14 chr3 56493159 56493995 -103105788 - Lx9 LINE L1 -313 7331 6427 7 1016 276 230 22 33 chr3 56495595 56495685 -103104098 + MER57A-int LTR ERV1 5804 5892 -295 7 1016 367 355 93 10 chr3 56496090 56496295 -103103488 + ORR1E LTR MaLR 19 240 -119 7 1016 240 308 0 0 chr3 56496502 56496567 -103103216 + (TG)n Simple_repeat Simple_repeat 2 66 0 7 1016 430 224 48 48 chr3 56496574 56496645 -103103138 - B4 SINE B4 -4 288 218 7 1016 225 0 0 0 chr3 56496645 56496670 -103103113 + (TG)n Simple_repeat Simple_repeat 2 26 0 7 1016 433 293 415 11 chr3 56496670 56496811 -103102972 - B4 SINE B4 -75 217 20 7 1016 1950 244 16 62 chr3 56497315 56497814 -103101969 + RMER15 LTR ERVL 13 488 -87 7 1016 272 272 83 75 chr3 56498195 56498383 -103101400 - LTRIS4 LTR ERV1 -32 532 283 7 1016 256 283 0 16 chr3 56499280 56499341 -103100442 - MER34A1 LTR ERV1 0 587 528 7 1016 1883 169 21 99 chr3 56499343 56499858 -103099925 + RMER4B LTR ERVK 2 466 0 7 1016 298 264 34 102 chr3 56499870 56499988 -103099795 - MER34A1 LTR ERV1 -56 531 422 7 1016 1880 180 111 32 chr3 56500053 56500495 -103099288 + RLTR28 LTR ERVL 48 524 0 1 1016 1026 284 64 80 chr3 56500952 56501480 -103098303 - LTR73 LTR ERV1 -35 537 18 2 1016 387 351 6 25 chr3 56501789 56501947 -103097836 + MLT1C LTR MaLR 313 467 0 3 1016 246 204 19 0 chr3 56503565 56503619 -103096164 + RLTR28B LTR ERVL 11 65 -459 4 1016 375 23 0 0 chr3 56503624 56503668 -103096115 + (TG)n Simple_repeat Simple_repeat 1 44 0 5 1016 858 70 0 0 chr3 56503668 56503781 -103096002 + (GA)n Simple_repeat Simple_repeat 1 114 0 6 1016 1425 170 27 107 chr3 56503791 56504192 -103095591 - RMER17C LTR ERVK -41 369 1 7 1016 691 277 129 60 chr3 56504192 56504541 -103095242 + RLTR28B LTR ERVL 71 443 -38 4 1016 1158 263 40 0 chr3 56504903 56505200 -103094583 - Lx8 LINE L1 -387 7086 6778 8 1016 548 297 42 0 chr3 56505200 56505365 -103094418 - RMER15-int LTR ERVL -370 4629 4458 9 1016 569 342 112 8 chr3 56506415 56506530 -103093253 + MLT1F LTR MaLR 26 185 -363 1 1016 552 30 0 0 chr3 56506530 56506596 -103093187 + (TG)n Simple_repeat Simple_repeat 2 67 0 1 1016 396 103 0 0 chr3 56506598 56506656 -103093127 + (CCTG)n Simple_repeat Simple_repeat 2 59 0 1 1016 569 298 99 30 chr3 56506656 56506852 -103092931 + MLT1F LTR MaLR 186 399 -149 1 1016 920 256 19 33 chr3 56507171 56507381 -103092402 + B3 SINE B2 6 212 -4 1 1016 772 315 5 36 chr3 56509547 56509771 -103090012 + B4 SINE B4 72 288 -4 1 1016 636 50 0 0 chr3 56510275 56510355 -103089428 + (TTTTC)n Simple_repeat Simple_repeat 1 80 0 1 1016 195 42 0 0 chr3 56510359 56510383 -103089400 + (TCCCC)n Simple_repeat Simple_repeat 4 27 0 1 1016 609 52 0 0 chr3 56510387 56510464 -103089319 + (TTCC)n Simple_repeat Simple_repeat 3 79 0 1 1016 255 259 0 0 chr3 56511048 56511106 -103088677 + (TTA)n Simple_repeat Simple_repeat 1 58 0 1 1016 437 357 83 71 chr3 56513813 56514220 -103085563 + LTR16B1 LTR ERVL 36 447 -33 1 1016 564 15 0 0 chr3 56514220 56514285 -103085498 + (TG)n Simple_repeat Simple_repeat 1 65 0 2 1016 639 277 69 0 chr3 56514856 56515015 -103084768 + MTD LTR MaLR 34 203 -216 2 1016 202 289 25 34 chr3 56515375 56515493 -103084290 + (TATATG)n Simple_repeat Simple_repeat 1 117 0 2 1016 1637 192 99 0 chr3 56516749 56516946 -103082837 - ORR1D1 LTR MaLR -5 369 150 2 1016 411 73 0 0 chr3 56516946 56517001 -103082782 + (CA)n Simple_repeat Simple_repeat 1 55 0 2 1016 1637 192 99 0 chr3 56517001 56517137 -103082646 - ORR1D1 LTR MaLR -225 149 4 2 1016 263 321 28 9 chr3 56518835 56518942 -103080841 + GA-rich Low_complexity Low_complexity 2 110 0 2 1016 1757 200 63 45 chr3 56519373 56519771 -103080012 - MTD LTR MaLR -14 405 1 2 1016 281 305 105 73 chr3 56519817 56520160 -103079623 + MLT1A LTR MaLR 35 370 -4 2 1016 382 265 28 47 chr3 56520302 56520409 -103079374 - MLT1-int LTR MaLR -599 772 668 2 1016 888 330 39 46 chr3 56521871 56521918 -103077865 - Lx8 LINE L1 -39 7434 7382 2 1016 875 92 0 8 chr3 56521918 56522050 -103077733 + (TTCC)n Simple_repeat Simple_repeat 4 134 0 3 1016 888 330 39 46 chr3 56522050 56522571 -103077212 - Lx8 LINE L1 -92 7381 6871 2 1016 6154 116 35 54 chr3 56522600 56523689 -103076094 - Lx LINE L1 0 6654 5587 3 1016 2124 256 124 4 chr3 56523698 56524446 -103075337 + RCHARR1 DNA MER1_type 103 940 -34 3 1016 980 164 20 106 chr3 56524660 56524906 -103074877 + URR1B DNA MER1_type 1 225 0 3 1016 969 217 112 89 chr3 56525201 56525780 -103074003 + MT2B LTR ERVL 1 540 -61 3 1016 238 333 11 0 chr3 56525869 56525956 -103073827 + L2 LINE L2 268 355 -3064 3 1016 498 312 29 75 chr3 56526022 56526195 -103073588 - B4A SINE B4 -124 168 4 3 1016 428 194 21 7 chr3 56527363 56527503 -103072280 + (TA)n Simple_repeat Simple_repeat 1 142 0 3 1016 1033 239 10 14 chr3 56527590 56527798 -103071985 + B3 SINE B2 7 213 -3 3 1016 4781 140 183 32 chr3 56527819 56528637 -103071146 - RLTR13D3 LTR ERVK 0 1114 142 3 1016 450 0 0 0 chr3 56528637 56528687 -103071096 + (CA)n Simple_repeat Simple_repeat 2 51 0 4 1016 4781 140 183 32 chr3 56528687 56528836 -103070947 - RLTR13D3 LTR ERVK -973 141 1 3 1016 981 151 24 0 chr3 56528857 56529023 -103070760 + MTC LTR MaLR 1 170 -251 4 1016 1930 168 38 68 chr3 56529048 56529445 -103070338 + RLTR41 LTR ERV1 62 446 0 4 1016 1495 191 28 4 chr3 56529445 56529693 -103070090 + MTC LTR MaLR 167 420 -1 4 1016 4697 195 115 13 chr3 56529693 56530834 -103068949 + MTC-int LTR MaLR 2 1258 0 4 1016 2582 151 24 0 chr3 56530834 56531245 -103068538 + MTC LTR MaLR 1 421 0 4 1016 257 275 29 14 chr3 56531685 56531755 -103068028 - MLT1J2 LTR MaLR -267 181 111 4 1016 584 72 48 0 chr3 56532320 56532403 -103067380 - MTB LTR MaLR 0 400 314 4 1016 3345 33 13 0 chr3 56532461 56532852 -103066931 - MTA_Mm LTR MaLR 0 396 1 4 1016 191 128 0 49 chr3 56535548 56535589 -103064194 + (TCTG)n Simple_repeat Simple_repeat 2 40 0 4 1016 559 290 40 0 chr3 56535610 56535734 -103064049 - B1_Mur1 SINE Alu -16 133 5 4 1016 21 0 0 0 chr3 56535744 56535765 -103064018 + AT_rich Low_complexity Low_complexity 1 21 0 4 1016 259 299 105 31 chr3 56535915 56536077 -103063706 + RLTR21 LTR ERVK 1080 1253 -319 4 1016 288 229 0 0 chr3 56536732 56536841 -103062942 + (CA)n Simple_repeat Simple_repeat 1 109 0 5 1016 4932 110 98 13 chr3 56536882 56537209 -103062574 + RMER17D LTR ERVK 1 367 -522 5 1016 1044 0 0 0 chr3 56537209 56537325 -103062458 + (TCTCC)n Simple_repeat Simple_repeat 5 120 0 5 1016 4932 110 98 13 chr3 56537325 56537815 -103061968 + RMER17D LTR ERVK 368 887 -2 5 1016 1927 217 50 15 chr3 56537951 56538354 -103061429 + MTD LTR MaLR 3 419 0 5 1016 218 269 15 15 chr3 56538819 56538887 -103060896 + CT-rich Low_complexity Low_complexity 4 71 0 5 1016 327 295 137 9 chr3 56540003 56540222 -103059561 + Lx8 LINE L1 7222 7468 -5 5 1016 210 37 0 0 chr3 56540471 56540498 -103059285 + (TTTTTG)n Simple_repeat Simple_repeat 4 30 0 5 1016 990 102 0 7 chr3 56540499 56540637 -103059146 - B1_Mus1 SINE Alu -1 147 11 5 1016 185 94 0 30 chr3 56540818 56540851 -103058932 + (TAAA)n Simple_repeat Simple_repeat 3 34 0 5 1016 476 180 154 39 chr3 56541440 56541544 -103058239 + MTD LTR MaLR 194 309 -110 5 1016 1098 303 58 74 chr3 56542509 56543025 -103056758 - LTR40a LTR ERVL -2 517 10 6 1016 866 307 111 25 chr3 56543895 56544293 -103055490 + Lx8 LINE L1 6896 7327 -146 6 1016 413 226 7 0 chr3 56544293 56544439 -103055344 + (CA)n Simple_repeat Simple_repeat 2 148 0 6 1016 315 0 0 0 chr3 56545247 56545282 -103054501 + (TTTC)n Simple_repeat Simple_repeat 2 36 0 6 1016 390 21 0 0 chr3 56546489 56546536 -103053247 + (TG)n Simple_repeat Simple_repeat 2 48 0 6 1016 457 321 71 0 chr3 56546540 56546652 -103053131 - RSINE1 SINE B4 -11 154 35 6 1016 187 54 54 0 chr3 56546653 56546690 -103053093 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 6 1016 411 21 0 0 chr3 56547204 56547252 -103052531 + (CA)n Simple_repeat Simple_repeat 1 48 0 6 1016 233 119 24 0 chr3 56547286 56547328 -103052455 + (TAA)n Simple_repeat Simple_repeat 2 44 0 6 1016 195 42 0 0 chr3 56547519 56547543 -103052240 + (TTTTTA)n Simple_repeat Simple_repeat 2 25 0 6 1016 22595 147 26 6 chr3 56548131 56552695 -103047088 + Lx3C LINE L1 866 5520 -366 7 1016 424 155 25 49 chr3 56552753 56552875 -103046908 + Lx3C LINE L1 6096 6214 -762 7 1016 398 397 0 0 chr3 56552898 56553024 -103046759 + B1F1 SINE Alu 3 128 -21 7 1016 685 297 20 10 chr3 56553053 56553233 -103046550 + ID_B1 SINE B4 3 187 -105 7 1016 280 283 41 116 chr3 56553196 56553368 -103046415 - Charlie8 DNA MER1_type -2199 229 71 7 1016 1148 224 168 26 chr3 56553870 56554210 -103045573 - MTD LTR MaLR -14 405 18 7 1016 24 0 0 0 chr3 56554612 56554636 -103045147 + AT_rich Low_complexity Low_complexity 1 24 0 7 1016 1127 115 0 12 chr3 56554726 56554885 -103044898 + B2_Mm2 SINE B2 2 158 -37 7 1016 513 0 0 0 chr3 56554885 56554942 -103044841 + (TG)n Simple_repeat Simple_repeat 2 58 0 7 1016 531 250 0 0 chr3 56555187 56555367 -103044416 + (TG)n Simple_repeat Simple_repeat 1 180 0 7 1016 957 202 14 14 chr3 56555424 56555635 -103044148 + B3 SINE B2 1 211 -5 7 1016 232 274 17 26 chr3 56556531 56556647 -103043136 + CT-rich Low_complexity Low_complexity 2 116 0 8 1016 334 276 76 30 chr3 56556668 56556799 -103042984 + MLT1A1 LTR MaLR 268 404 -4 8 1016 881 308 111 22 chr3 56557078 56557393 -103042390 - ORR1E LTR MaLR -15 344 2 8 1016 636 311 26 26 chr3 56559274 56559469 -103040314 + B3A SINE B2 1 195 -3 8 1016 396 0 0 0 chr3 56559664 56559708 -103040075 + (TG)n Simple_repeat Simple_repeat 2 45 0 8 1016 425 220 252 0 chr3 56561299 56561393 -103038390 + Lx9 LINE L1 7370 7478 -166 8 1016 495 107 0 0 chr3 56561393 56561468 -103038315 + (CA)n Simple_repeat Simple_repeat 2 76 0 8 1016 425 220 252 0 chr3 56561468 56561587 -103038196 + Lx9 LINE L1 7479 7636 -8 8 1016 475 214 14 143 chr3 56561761 56561833 -103037950 + MTD LTR MaLR 13 79 -340 8 1016 847 169 0 7 chr3 56561833 56561970 -103037813 + B1_Mur2 SINE Alu 5 140 -9 8 1016 365 71 36 0 chr3 56561970 56562026 -103037757 + (CTAA)n Simple_repeat Simple_repeat 3 60 0 8 1016 475 214 14 143 chr3 56562026 56562099 -103037684 + MTD LTR MaLR 80 139 -280 8 1016 221 83 28 0 chr3 56562349 56562385 -103037398 + (TCTA)n Simple_repeat Simple_repeat 1 37 0 9 1016 3291 240 15 9 chr3 56562417 56563153 -103036630 - Lx5 LINE L1 -11 7039 6300 9 1016 14475 17 0 0 chr3 56563153 56565649 -103034134 - L1Md_T LINE L1 0 6582 4113 9 1016 1148 234 52 34 chr3 56565651 56566000 -103033783 - Lx5 LINE L1 -743 6307 5953 9 1016 799 236 148 7 chr3 56566081 56566334 -103033449 + MTD LTR MaLR 130 419 0 8 1016 214 323 15 0 chr3 56566572 56566637 -103033146 + L2 LINE L2 2677 2742 -677 9 1016 255 231 75 30 chr3 56567255 56567322 -103032461 - MIR3 SINE MIR -49 159 90 9 1016 215 364 7 20 chr3 56568878 56569024 -103030759 + CT-rich Low_complexity Low_complexity 3 146 0 9 1016 1418 219 144 24 chr3 56571693 56572067 -103027716 - MTD LTR MaLR 0 419 1 9 1016 480 234 125 0 chr3 56573195 56573387 -103026396 - Lx9 LINE L1 -6 7638 7423 9 1016 298 288 0 0 chr3 56573443 56573516 -103026267 - ID4 SINE ID -9 74 2 9 1016 232 296 135 40 chr3 56573782 56573930 -103025853 + MIRb SINE MIR 72 233 -35 9 1016 394 291 117 0 chr3 56574424 56574580 -103025203 - MER5A DNA MER1_type 0 189 3 1 1016 469 288 24 8 chr3 56574782 56574908 -103024875 + B1F SINE Alu 2 129 -20 1 1016 249 372 0 0 chr3 56574929 56575007 -103024776 + ID4_ SINE ID 2 79 -4 1 1016 29 0 0 0 chr3 56575010 56575039 -103024744 + AT_rich Low_complexity Low_complexity 1 29 0 1 1016 222 208 0 0 chr3 56575142 56575190 -103024593 + (CA)n Simple_repeat Simple_repeat 1 48 0 1 1016 825 273 84 0 chr3 56576728 56576977 -103022806 + B4A SINE B4 5 274 -18 1 1016 920 312 75 36 chr3 56578538 56578752 -103021031 + MT2A LTR ERVL 15 229 -304 1 1016 585 0 0 0 chr3 56578752 56578817 -103020966 + (CTG)n Simple_repeat Simple_repeat 1 65 0 1 1016 920 280 128 100 chr3 56578817 56579152 -103020631 + MT2A LTR ERVL 230 593 -8 1 1016 904 254 5 5 chr3 56579299 56579505 -103020278 + B3 SINE B2 5 210 -6 1 1016 1369 80 16 0 chr3 56581075 56581262 -103018521 - B2_Mm2 SINE B2 -5 190 1 1 1016 723 246 54 11 chr3 56581321 56581506 -103018277 + B3A SINE B2 1 193 -5 1 1016 4839 63 0 3 chr3 56581515 56582137 -103017646 + L1Md_F2 LINE L1 5961 6580 -2 1 1016 266 309 113 0 chr3 56582803 56582900 -103016883 - ORR1E LTR MaLR -229 130 23 1 1016 860 196 59 15 chr3 56584571 56584773 -103015010 + Lx5 LINE L1 6840 7050 0 1 1016 580 287 6 31 chr3 56585571 56585733 -103014050 - RSINE1 SINE B4 0 165 8 1 1016 188 296 97 14 chr3 56586020 56586092 -103013691 + L2 LINE L2 1459 1536 -1883 1 1016 1950 191 80 0 chr3 56586930 56587276 -103012507 + MTB_Mm LTR MaLR 1 370 -37 1 1016 321 26 0 0 chr3 56587276 56587314 -103012469 + (TTTG)n Simple_repeat Simple_repeat 3 40 0 1 1016 1950 191 80 0 chr3 56587314 56587344 -103012439 + MTB_Mm LTR MaLR 371 406 -1 1 1016 454 349 97 54 chr3 56587933 56588378 -103011405 - MLT1H1 LTR MaLR -65 490 21 1 1016 348 268 36 12 chr3 56588515 56588598 -103011185 + RSINE1 SINE B4 71 155 -10 1 1016 684 24 0 0 chr3 56588598 56588680 -103011103 + (TC)n Simple_repeat Simple_repeat 2 83 0 1 1016 231 114 0 0 chr3 56588680 56588715 -103011068 + (TATG)n Simple_repeat Simple_repeat 2 36 0 1 1016 549 105 0 0 chr3 56590417 56590503 -103009280 + (TTCC)n Simple_repeat Simple_repeat 4 89 0 1 1016 255 61 0 0 chr3 56590496 56590529 -103009254 + (TC)n Simple_repeat Simple_repeat 2 34 0 1 1016 24 32 0 0 chr3 56590573 56590604 -103009179 + AT_rich Low_complexity Low_complexity 1 31 0 1 1016 634 270 45 28 chr3 56590627 56590806 -103008977 - B3A SINE B2 -16 182 1 1 1016 1705 116 8 0 chr3 56591716 56591975 -103007808 + L1_Mus2 LINE L1 6306 6566 0 1 1016 392 0 21 0 chr3 56592024 56592072 -103007711 + (TCTA)n Simple_repeat Simple_repeat 3 51 0 1 1016 384 311 0 11 chr3 56592083 56592174 -103007609 - RSINE1 SINE B4 -2 163 74 1 1016 421 289 0 0 chr3 56594311 56594408 -103005375 - PB1D10 SINE Alu -7 110 14 1 1016 438 270 194 12 chr3 56595565 56595730 -103004053 - B3 SINE B2 -2 214 20 1 1016 438 227 20 10 chr3 56596607 56596705 -103003078 - MTD LTR MaLR 0 419 321 1 1016 1522 231 60 81 chr3 56596736 56597183 -103002600 + RLTR28B LTR ERVL 17 454 -27 1 1016 999 217 104 21 chr3 56597191 56597431 -103002352 - MTD LTR MaLR -92 327 68 1 1016 7062 154 64 48 chr3 56597458 56598558 -103001225 - Lx4A LINE L1 -4 7054 5929 1 1016 3874 47 19 0 chr3 56598558 56599024 -103000759 + MT2C_Mm LTR ERVL 1 475 0 1 1016 7062 155 50 38 chr3 56599024 56599467 -103000316 - Lx4A LINE L1 -1130 5928 5481 1 1016 323 286 12 0 chr3 56599467 56599551 -103000232 - MTD LTR MaLR -334 85 1 1 1016 1133 288 24 29 chr3 56599555 56599931 -102999852 - MTEa LTR MaLR -1 378 5 1 1016 960 248 139 48 chr3 56600437 56600643 -102999140 + RMER1B Other Other 36 278 -788 1 1016 468 0 0 0 chr3 56600643 56600695 -102999088 + (TG)n Simple_repeat Simple_repeat 1 52 0 1 1016 2528 210 133 11 chr3 56600695 56601361 -102998422 + RMER1A Other Other 279 952 -78 1 1016 1302 140 43 13 chr3 56602005 56602237 -102997546 + RMER19B LTR ERVK 664 902 0 1 1016 1335 294 0 34 chr3 56602844 56602961 -102996822 + Lx9 LINE L1 6628 6736 -908 1 1016 3980 29 11 69 chr3 56602961 56603484 -102996299 - MT2_Mm LTR ERVL 0 493 1 1 1016 1335 294 0 34 chr3 56603484 56603803 -102995980 + Lx9 LINE L1 6737 7049 -595 1 1016 1168 218 73 46 chr3 56604470 56604844 -102994939 + MTD LTR MaLR 3 419 0 1 1016 4703 34 76 3 chr3 56605493 56606083 -102993700 + L1Md_F2 LINE L1 5938 6570 -12 1 1016 842 251 169 25 chr3 56606523 56606842 -102992941 + MLT1A0 LTR MaLR 1 365 0 1 1016 32 26 0 0 chr3 56606867 56606906 -102992877 + AT_rich Low_complexity Low_complexity 1 39 0 1 1016 200 347 56 32 chr3 56606908 56607033 -102992750 - MIRb SINE MIR -88 180 53 1 1016 372 43 0 0 chr3 56607974 56608020 -102991763 + (TG)n Simple_repeat Simple_repeat 2 47 0 1 1016 1326 265 39 50 chr3 56608241 56608602 -102991181 + ORR1E LTR MaLR 1 357 -2 1 1016 21 36 0 0 chr3 56609176 56609204 -102990579 + AT_rich Low_complexity Low_complexity 1 28 0 1 1016 353 118 78 24 chr3 56609221 56609288 -102990495 + MT2B LTR ERVL 12 83 -518 1 1016 5555 169 21 28 chr3 56609288 56610083 -102989700 + RLTR25B LTR ERVK 1 790 -238 1 1016 984 121 34 6 chr3 56610083 56610258 -102989525 - L1_Mus3 LINE L1 -2 6636 6457 1 1016 5555 169 21 28 chr3 56610258 56610497 -102989286 + RLTR25B LTR ERVK 791 1027 -1 1 1016 993 205 151 46 chr3 56610541 56610911 -102988872 + MT2B LTR ERVL 62 601 0 1 1016 1035 186 118 5 chr3 56611132 56611343 -102988440 + ORR1B2 LTR MaLR 1 235 -132 1 1016 2778 174 123 12 chr3 56611338 56611609 -102988174 + ORR1B2-int LTR MaLR 156 434 -1075 1 1016 225 0 0 0 chr3 56611609 56611634 -102988149 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 1 1016 2778 174 123 12 chr3 56611634 56612020 -102987763 + ORR1B2-int LTR MaLR 435 886 -623 1 1016 232 203 13 13 chr3 56612343 56612418 -102987365 + BC1_Mm scRNA scRNA 54 128 -24 1 1016 2770 95 10 2 chr3 56612527 56612927 -102986856 + L1_Mus3 LINE L1 6233 6635 -3 1 1016 557 184 18 9 chr3 56612988 56613007 -102986776 + ORR1B2-int LTR MaLR 1258 1277 -93 1 1016 788 20 0 0 chr3 56613007 56613109 -102986674 + L1Md_T LINE L1 6480 6581 -1 1 1016 557 184 18 9 chr3 56613109 56613199 -102986584 + ORR1B2-int LTR MaLR 1278 1367 -3 1 1016 1983 139 67 3 chr3 56613201 56613546 -102986237 + ORR1B2 LTR MaLR 1 367 0 1 1016 210 278 14 27 chr3 56613569 56613643 -102986140 + GA-rich Low_complexity Low_complexity 3 75 0 1 1016 542 86 12 0 chr3 56614130 56614211 -102985572 + (TAGA)n Simple_repeat Simple_repeat 1 82 0 1 1016 372 329 46 92 chr3 56614922 56614977 -102984806 + B4 SINE B4 64 224 -63 1 1016 613 184 26 0 chr3 56614977 56615091 -102984692 + B1_Mus2 SINE Alu 30 146 -1 1 1016 25 0 0 0 chr3 56615096 56615121 -102984662 + AT_rich Low_complexity Low_complexity 1 25 0 1 1016 360 31 43 71 chr3 56615268 56615338 -102984445 + L1Md_F3 LINE L1 6517 6584 0 1 1016 197 179 34 51 chr3 56615528 56615587 -102984196 - L3 LINE CR1 -2114 2375 2318 1 1016 315 0 0 0 chr3 56617666 56617701 -102982082 + (TA)n Simple_repeat Simple_repeat 2 36 0 1 1016 360 0 0 0 chr3 56617701 56617740 -102982043 + (TG)n Simple_repeat Simple_repeat 1 40 0 1 1016 316 172 47 0 chr3 56617743 56617807 -102981976 + Tigger7 DNA MER2_type 443 509 -1982 1 1016 764 279 11 22 chr3 56617811 56617994 -102981789 - B3A SINE B2 -16 182 2 1 1016 342 0 0 0 chr3 56619316 56619354 -102980429 + (CA)n Simple_repeat Simple_repeat 1 38 0 1 1016 2029 80 0 0 chr3 56619416 56619679 -102980104 + L1_Mus2 LINE L1 6303 6565 -1 1 1016 1349 73 17 0 chr3 56620892 56621070 -102978713 - B2_Mm2 SINE B2 -14 181 1 1 1016 1198 225 88 57 chr3 56621314 56621668 -102978115 - MTD LTR MaLR -7 412 48 1 1016 375 23 0 0 chr3 56622359 56622403 -102977380 + (T)n Simple_repeat Simple_repeat 1 44 0 1 15 6731 44 2 0 chr3 56622430 56623289 -102976494 - L1Md_F2 LINE L1 -12 6570 5710 1 1017 9694 58 0 0 chr3 56623285 56624555 -102975228 + L1Md_F2 LINE L1 4441 5710 -173 1 1017 417 250 33 67 chr3 56625355 56625475 -102974308 + B3 SINE B2 1 116 -100 1 1017 924 257 83 39 chr3 56625604 56625973 -102973810 + RMER20B LTR ERVK 151 514 -2 1 1017 595 257 0 59 chr3 56625981 56626134 -102973649 + B3 SINE B2 68 211 -5 1 1017 269 336 39 23 chr3 56626457 56626585 -102973198 + MLT1L LTR MaLR 121 250 -360 1 1017 817 114 7 14 chr3 56627675 56627817 -102971966 + (TCCC)n Simple_repeat Simple_repeat 1 141 0 1 1017 298 265 247 23 chr3 56627852 56628026 -102971757 - Lx8 LINE L1 -214 7259 7047 1 1017 198 311 0 16 chr3 56628333 56628395 -102971388 - MIR SINE MIR -2 260 200 1 1017 261 21 0 94 chr3 56629331 56629384 -102970399 + (TTTTTG)n Simple_repeat Simple_repeat 6 53 0 1 1017 1166 68 0 7 chr3 56629384 56629532 -102970251 - B1_Mus2 SINE Alu 0 147 1 1 1017 294 182 26 52 chr3 56629697 56629813 -102969970 + A-rich Low_complexity Low_complexity 3 115 0 1 1017 468 116 0 0 chr3 56629826 56629912 -102969871 + (GA)n Simple_repeat Simple_repeat 2 87 0 1 1017 1115 81 0 26 chr3 56630035 56630188 -102969595 + B2_Mm2 SINE B2 1 149 -46 1 1017 207 0 0 0 chr3 56630188 56630211 -102969572 + (CA)n Simple_repeat Simple_repeat 2 24 0 1 1017 477 0 0 0 chr3 56630211 56630263 -102969520 + (TA)n Simple_repeat Simple_repeat 1 53 0 1 1017 1080 246 26 15 chr3 56630264 56630536 -102969247 - Lx7 LINE L1 -514 7182 6908 1 1017 243 200 20 0 chr3 56630580 56630630 -102969153 + (CATA)n Simple_repeat Simple_repeat 2 52 0 1 1017 6297 59 15 1 chr3 56631047 56631844 -102967939 - RLTR13C2 LTR ERVK 0 808 1 1 1017 2088 257 57 10 chr3 56632810 56633423 -102966360 - Lx7 LINE L1 -784 6912 6271 1 1017 209 306 0 0 chr3 56633496 56633558 -102966225 + (TG)n Simple_repeat Simple_repeat 1 62 0 1 1017 331 253 12 12 chr3 56633559 56633723 -102966060 + (TATG)n Simple_repeat Simple_repeat 2 165 0 1 1017 396 220 13 26 chr3 56633735 56633889 -102965894 + (TATG)n Simple_repeat Simple_repeat 1 152 0 1 1017 303 237 0 17 chr3 56634021 56634081 -102965702 + B1F2 SINE Alu 1 59 -90 1 1017 320 347 181 47 chr3 56634284 56634538 -102965245 + MLT1G1 LTR MaLR 209 496 -83 1 1017 193 228 23 102 chr3 56634856 56634944 -102964839 - L4 LINE RTE -649 1380 1300 1 1017 468 0 0 0 chr3 56634974 56635026 -102964757 + (TC)n Simple_repeat Simple_repeat 1 52 0 1 1017 991 214 48 0 chr3 56635069 56635275 -102964508 - B3 SINE B2 0 216 1 1 1017 387 313 0 0 chr3 56635307 56635406 -102964377 + PB1D10 SINE Alu 2 100 -17 1 1017 204 40 0 0 chr3 56635635 56635660 -102964123 + (TA)n Simple_repeat Simple_repeat 2 26 0 1 1017 395 298 53 53 chr3 56635685 56635855 -102963928 + B4A SINE B4 117 286 -6 2 1017 459 0 0 0 chr3 56635867 56635918 -102963865 + (CA)n Simple_repeat Simple_repeat 2 52 0 2 1017 4135 43 33 2 chr3 56636028 56636543 -102963240 + L1_Mus1 LINE L1 6037 6567 0 2 1017 246 290 102 49 chr3 56636555 56636780 -102963003 + RMER17C LTR ERVK 69 305 -105 2 1017 399 41 0 0 chr3 56636844 56636893 -102962890 + (CA)n Simple_repeat Simple_repeat 1 49 0 2 1017 27 49 0 0 chr3 56636894 56636935 -102962848 + AT_rich Low_complexity Low_complexity 1 41 0 2 1017 245 182 0 0 chr3 56637237 56637292 -102962491 + (TG)n Simple_repeat Simple_repeat 2 56 0 2 1017 280 212 0 24 chr3 56637296 56637378 -102962405 + GA-rich Low_complexity Low_complexity 1 80 0 2 1017 509 300 93 51 chr3 56637849 56638063 -102961720 + MER2 DNA MER2_type 122 344 -1 2 1017 24 0 0 0 chr3 56638446 56638470 -102961313 + AT_rich Low_complexity Low_complexity 1 24 0 2 1017 356 284 0 0 chr3 56638780 56638861 -102960922 - B1F1 SINE Alu -29 120 40 2 1017 200 79 53 0 chr3 56639022 56639060 -102960723 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 2 1017 435 294 224 0 chr3 56639777 56639947 -102959836 - MIR SINE MIR -26 236 29 2 1017 512 253 151 22 chr3 56640285 56640596 -102959187 + L1MA5 LINE L1 5945 6295 -5 2 1017 308 195 45 68 chr3 56640600 56640688 -102959095 - MLT1A1 LTR MaLR -21 387 302 2 1017 486 0 0 0 chr3 56640915 56640969 -102958814 + (CA)n Simple_repeat Simple_repeat 2 55 0 2 1017 552 89 0 0 chr3 56641453 56641532 -102958251 + (GA)n Simple_repeat Simple_repeat 1 79 0 2 1017 634 182 0 0 chr3 56641585 56641684 -102958099 - B1F2 SINE Alu -7 142 44 2 1017 729 258 18 0 chr3 56641756 56641923 -102957860 + B3 SINE B2 1 170 -46 2 1017 1271 141 37 33 chr3 56641920 56642162 -102957621 + RLTR11A LTR ERVK 286 528 0 2 1017 22 0 0 0 chr3 56643269 56643291 -102956492 + AT_rich Low_complexity Low_complexity 1 22 0 2 1017 942 96 0 0 chr3 56643458 56643593 -102956190 + (TTCTC)n Simple_repeat Simple_repeat 1 135 0 2 1017 1359 28 11 6 chr3 56643594 56643771 -102956012 + (TCTCC)n Simple_repeat Simple_repeat 3 180 0 2 1017 585 28 0 0 chr3 56643771 56643841 -102955942 + (TTTTC)n Simple_repeat Simple_repeat 3 73 0 2 1017 4346 17 0 0 chr3 56644286 56644768 -102955015 + LTRIS_Mm LTR ERV1 1 482 0 2 1017 263 291 133 25 chr3 56644912 56645032 -102954751 + MTE2a LTR MaLR 1 133 -246 2 1017 781 276 46 0 chr3 56645418 56645592 -102954191 + B3 SINE B2 2 183 -33 2 1017 222 62 0 0 chr3 56645592 56645624 -102954159 + (CAAAA)n Simple_repeat Simple_repeat 1 32 0 2 1017 1949 125 94 3 chr3 56645761 56646090 -102953693 - ORR1B2 LTR MaLR -8 359 1 2 1017 2938 188 111 20 chr3 56646090 56646528 -102953255 - ORR1B2-int LTR MaLR 0 1509 663 2 1017 477 262 28 28 chr3 56646528 56646673 -102953110 - B1_Mus2 SINE Alu -1 146 2 2 1017 3293 175 21 13 chr3 56646673 56647297 -102952486 - ORR1B2-int LTR MaLR -880 629 1 2 1017 1670 178 66 55 chr3 56647297 56647660 -102952123 - ORR1B2 LTR MaLR 0 367 1 2 1017 458 343 102 90 chr3 56647752 56648165 -102951618 + MLT1D LTR MaLR 22 439 -66 2 1017 23 33 0 0 chr3 56648254 56648284 -102951499 + AT_rich Low_complexity Low_complexity 1 30 0 2 1017 187 174 0 115 chr3 56649157 56649209 -102950574 + L4 LINE RTE 1982 2027 -2 2 1017 866 219 99 21 chr3 56649313 56649375 -102950408 - Tigger5 DNA MER2_type 0 2406 2337 2 1017 468 0 0 0 chr3 56649375 56649427 -102950356 + (TAA)n Simple_repeat Simple_repeat 3 54 0 2 1017 866 219 99 21 chr3 56649427 56649597 -102950186 - Tigger5 DNA MER2_type -70 2336 2156 2 1017 26 0 0 0 chr3 56650318 56650344 -102949439 + AT_rich Low_complexity Low_complexity 1 26 0 2 1017 1998 104 97 0 chr3 56650393 56650691 -102949092 - ORR1A2 LTR MaLR 0 327 1 2 1017 352 240 70 119 chr3 56651523 56651751 -102948032 + ORR1E LTR MaLR 25 255 -104 2 1017 1156 179 31 4 chr3 56651815 56652040 -102947743 + MT2A LTR ERVL 1 231 -302 2 1017 33837 72 3 13 chr3 56652040 56658164 -102941619 - L1Md_F2 LINE L1 -12 6570 511 2 1017 242 154 0 0 chr3 56658166 56658205 -102941578 + MT2A LTR ERVL 218 256 -277 2 1017 575 199 7 90 chr3 56659789 56659933 -102939850 + MT2A LTR ERVL 1 132 -401 2 1017 318 236 0 27 chr3 56659919 56659993 -102939790 + MT2A LTR ERVL 86 157 -376 2 1017 201 147 0 0 chr3 56659994 56660028 -102939755 + (CATA)n Simple_repeat Simple_repeat 2 35 0 2 1017 360 0 0 0 chr3 56660063 56660103 -102939680 + (GA)n Simple_repeat Simple_repeat 1 40 0 2 1017 230 163 20 0 chr3 56660110 56660159 -102939624 + MT2A LTR ERVL 484 533 0 2 1017 227 0 0 0 chr3 56660544 56660572 -102939211 - L1_Mm LINE L1 -1514 4369 4342 2 1017 3230 33 25 5 chr3 56660572 56660967 -102938816 + L1Md_F2 LINE L1 6180 6582 0 2 1017 642 310 137 30 chr3 56661593 56661826 -102937957 + B4A SINE B4 32 289 -3 2 1017 648 94 0 0 chr3 56661836 56661942 -102937841 + (GA)n Simple_repeat Simple_repeat 1 106 0 2 1017 563 257 79 17 chr3 56662071 56662389 -102937394 + L1M2 LINE L1 5109 5441 -859 2 1017 357 257 28 37 chr3 56662527 56662636 -102937147 + L1M2 LINE L1 5660 5767 -545 2 1017 971 194 146 4 chr3 56662731 56662964 -102936819 + MTD LTR MaLR 154 419 0 2 1017 192 381 75 20 chr3 56663021 56663222 -102936561 - MIRb SINE MIR -3 265 54 2 1017 192 261 0 0 chr3 56663315 56663380 -102936403 + (TGG)n Simple_repeat Simple_repeat 1 65 0 2 1017 520 278 38 38 chr3 56663397 56663528 -102936255 + RSINE1 SINE B4 11 141 -24 2 1017 450 0 0 0 chr3 56663528 56663578 -102936205 + (CA)n Simple_repeat Simple_repeat 1 50 0 2 1017 315 0 0 0 chr3 56663578 56663612 -102936171 + (GA)n Simple_repeat Simple_repeat 2 36 0 2 1017 2384 200 26 4 chr3 56663959 56664049 -102935734 - RLTR20A2 LTR ERVK 0 578 483 2 1017 470 96 14 0 chr3 56664049 56664122 -102935661 + (CA)n Simple_repeat Simple_repeat 2 75 0 2 1017 2384 200 26 4 chr3 56664122 56664493 -102935290 - RLTR20A2 LTR ERVK -96 482 108 2 1017 8968 57 0 10 chr3 56664501 56666419 -102933364 - L1Md_F2 LINE L1 -10 6572 4674 2 1017 585 135 0 96 chr3 56666419 56666534 -102933249 - RLTR20A2 LTR ERVK -430 104 1 2 1017 583 265 153 46 chr3 56666829 56666927 -102932856 - MTC LTR MaLR -129 292 174 2 1017 319 202 12 0 chr3 56666927 56667011 -102932772 - Lx4A LINE L1 -5 7053 6969 2 1017 583 265 153 46 chr3 56667011 56667173 -102932610 - MTC LTR MaLR -248 173 5 2 1017 357 282 146 73 chr3 56667929 56668189 -102931594 - MLT1H LTR MaLR -1 548 270 2 1017 854 197 150 0 chr3 56669707 56669900 -102929883 - URR1A DNA MER1_type -4 222 1 2 1017 1220 210 0 13 chr3 56670197 56670424 -102929359 - MTC LTR MaLR -2 419 196 2 1017 1577 272 38 20 chr3 56670445 56670898 -102928885 - Lx5 LINE L1 -7 7043 6583 2 1017 1280 109 5 30 chr3 56670899 56671098 -102928685 - MTB_Mm LTR MaLR -213 194 1 2 1017 616 266 65 87 chr3 56671116 56671425 -102928358 - MLT1B LTR MaLR -33 357 56 2 1017 640 266 97 15 chr3 56671432 56671627 -102928156 - B3 SINE B2 -5 211 1 2 1017 4702 74 20 8 chr3 56671815 56672457 -102927326 - L1Md_F2 LINE L1 0 6582 5933 2 1017 8428 193 31 18 chr3 56672468 56675141 -102924642 - Lx2 LINE L1 0 6997 4280 2 1017 1873 94 5 79 chr3 56675131 56675472 -102924311 - MusHAL1 LINE L1 -1735 977 649 2 1017 7805 11 0 0 chr3 56675472 56676346 -102923437 + L1Md_A LINE L1 5709 6582 0 2 1017 1873 94 5 79 chr3 56676346 56676398 -102923385 - MusHAL1 LINE L1 -2064 648 613 2 1017 227 164 35 35 chr3 56677452 56677509 -102922274 + A-rich Low_complexity Low_complexity 6 62 0 2 1017 807 72 0 0 chr3 56677509 56677620 -102922163 + (CA)n Simple_repeat Simple_repeat 2 112 0 2 1017 1553 40 15 5 chr3 56678075 56678276 -102921507 + L1Md_F3 LINE L1 6381 6583 -1 2 1017 35 0 0 0 chr3 56678739 56678774 -102921009 + AT_rich Low_complexity Low_complexity 1 35 0 2 1017 470 288 90 0 chr3 56678783 56678960 -102920823 + Lx9 LINE L1 6704 6896 -748 2 1017 1516 285 58 22 chr3 56679217 56679242 -102920541 + RLTR20B1 LTR ERVK 84 108 -455 2 1017 257 0 30 0 chr3 56679242 56679275 -102920508 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 2 1017 1516 285 58 22 chr3 56679275 56679712 -102920071 + RLTR20B1 LTR ERVK 109 563 0 2 1017 2646 183 15 25 chr3 56679714 56680241 -102919542 + RLTR11A LTR ERVK 7 528 0 2 1017 1237 281 87 30 chr3 56680244 56680739 -102919044 + Lx9 LINE L1 6897 7419 -225 2 1017 2162 88 29 78 chr3 56680840 56681184 -102918599 - ORR1A2 LTR MaLR 0 327 1 2 1017 645 38 0 0 chr3 56681638 56681718 -102918065 + (TG)n Simple_repeat Simple_repeat 1 80 0 2 1017 1918 5 0 0 chr3 56681774 56681991 -102917792 + L1Md_A LINE L1 6366 6582 0 2 1017 192 40 0 0 chr3 56682188 56682213 -102917570 + (CAA)n Simple_repeat Simple_repeat 2 26 0 2 1017 285 128 0 0 chr3 56682297 56682344 -102917439 + (TTTC)n Simple_repeat Simple_repeat 2 48 0 2 1017 3897 161 63 101 chr3 56682396 56682639 -102917144 + RMER19B LTR ERVK 1 245 -657 2 1017 243 0 0 0 chr3 56682639 56682666 -102917117 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2 1017 3897 161 63 101 chr3 56682666 56682966 -102916817 + RMER19B LTR ERVK 246 543 -359 2 1017 1353 57 0 0 chr3 56682966 56683141 -102916642 + (TTTC)n Simple_repeat Simple_repeat 4 178 0 2 1017 3897 161 63 101 chr3 56683141 56683166 -102916617 + RMER19B LTR ERVK 544 544 -358 2 1017 4955 92 44 7 chr3 56683166 56683896 -102915887 - L1_Mus3 LINE L1 -2 6636 5880 2 1017 3897 161 63 101 chr3 56683896 56684194 -102915589 + RMER19B LTR ERVK 544 836 -66 2 1017 22 35 0 0 chr3 56684867 56684896 -102914887 + AT_rich Low_complexity Low_complexity 1 29 0 2 1017 738 224 7 13 chr3 56685185 56685334 -102914449 - B1_Mur1 SINE Alu 0 149 2 2 1017 471 265 28 70 chr3 56685491 56685633 -102914150 + ORR1D2 LTR MaLR 1 136 -234 2 1017 376 323 55 65 chr3 56685633 56685832 -102913951 - B3A SINE B2 0 198 2 2 1017 331 308 23 86 chr3 56685832 56685863 -102913920 + ORR1D2 LTR MaLR 136 163 -211 2 1017 1575 185 118 39 chr3 56686168 56686500 -102913283 + ORR1B1 LTR MaLR 29 386 -8 2 1017 6282 205 120 1 chr3 56686505 56687853 -102911930 + ORR1B1-int LTR MaLR 2 1509 0 2 1017 2090 166 23 30 chr3 56687853 56688250 -102911533 + ORR1B1 LTR MaLR 1 394 0 2 1017 833 129 7 0 chr3 56689838 56689977 -102909806 + (TTCC)n Simple_repeat Simple_repeat 1 140 0 2 1017 735 172 17 17 chr3 56690000 56690177 -102909606 + CT-rich Low_complexity Low_complexity 4 180 0 2 1017 207 139 0 0 chr3 56690719 56690755 -102909028 + (CCA)n Simple_repeat Simple_repeat 3 38 0 2 1017 326 307 98 85 chr3 56690997 56691150 -102908633 + RSINE1 SINE B4 3 157 -8 2 1017 665 144 43 43 chr3 56691181 56691504 -102908279 + (TAGA)n Simple_repeat Simple_repeat 1 323 0 2 1017 31 44 0 0 chr3 56691504 56691549 -102908234 + AT_rich Low_complexity Low_complexity 1 45 0 2 1017 485 243 29 190 chr3 56692263 56692400 -102907383 - B1F SINE Alu -1 119 5 2 1017 308 317 144 29 chr3 56692670 56692878 -102906905 + MLT1D LTR MaLR 208 439 -66 2 1017 1501 232 44 30 chr3 56692886 56693307 -102906476 - RMER19C LTR ERVK 0 611 272 3 1017 567 0 0 0 chr3 56693307 56693370 -102906413 + (CACAT)n Simple_repeat Simple_repeat 1 63 0 3 1017 357 283 87 75 chr3 56693370 56693391 -102906392 - RMER19C LTR ERVK -572 330 310 3 1017 1103 66 13 0 chr3 56694277 56694429 -102905354 + (TTTTC)n Simple_repeat Simple_repeat 2 155 0 3 1017 227 54 27 0 chr3 56694773 56694810 -102904973 + (CAA)n Simple_repeat Simple_repeat 2 39 0 3 1017 319 263 92 63 chr3 56694934 56695076 -102904707 + L1M5 LINE L1 2697 2842 -3304 3 1017 373 343 146 13 chr3 56695124 56695440 -102904343 - L1MEe LINE L1 -4425 429 72 3 1017 662 320 123 7 chr3 56695442 56695719 -102904064 - MER70A LTR ERVL 0 472 164 3 1017 516 214 13 30 chr3 56695910 56696032 -102903751 + PB1D10 SINE Alu 4 120 -28 3 1017 281 279 29 52 chr3 56696282 56696418 -102903365 - Lx5 LINE L1 -5 7045 6913 3 1017 2063 226 83 15 chr3 56696422 56696962 -102902821 - Lx5 LINE L1 -459 6591 6015 3 1017 1195 292 60 44 chr3 56697372 56697869 -102901914 + Lx8 LINE L1 6741 7247 -226 3 1017 519 17 0 0 chr3 56697869 56697929 -102901854 + (GAAA)n Simple_repeat Simple_repeat 2 61 0 3 1017 1195 292 60 44 chr3 56697929 56698001 -102901782 + Lx8 LINE L1 7248 7319 -154 3 1017 354 303 55 49 chr3 56698191 56698495 -102901288 - L1MB3 LINE L1 -75 6096 5786 3 1017 826 191 214 0 chr3 56698495 56698673 -102901110 - B3 SINE B2 0 216 1 3 1017 354 295 51 51 chr3 56698673 56698734 -102901049 - L1MB3 LINE L1 -398 5785 5725 3 1017 275 289 115 20 chr3 56698741 56698985 -102900798 - L1MA9 LINE L1 -43 6269 6003 3 1017 1721 216 36 2 chr3 56699140 56699547 -102900236 - Lx6 LINE L1 -4 7456 7049 3 1017 928 233 34 34 chr3 56699555 56699652 -102900131 + MTD LTR MaLR 42 143 -276 3 1017 6170 121 30 18 chr3 56699652 56700599 -102899184 - RMER17B LTR ERVK 0 958 1 3 1017 928 239 84 46 chr3 56700599 56700843 -102898940 + MTD LTR MaLR 111 379 0 3 1017 265 59 28 56 chr3 56701008 56701080 -102898703 + (TTTTTG)n Simple_repeat Simple_repeat 4 73 0 3 1017 222 208 0 0 chr3 56701563 56701611 -102898172 + GA-rich Low_complexity Low_complexity 1 48 0 3 1017 320 282 0 13 chr3 56701809 56701888 -102897895 + ID4_ SINE ID 3 80 -3 3 1017 1884 95 0 4 chr3 56702125 56702389 -102897394 - L1_Mus4 LINE L1 -9 6627 6365 3 1017 234 91 0 0 chr3 56704566 56704599 -102895184 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 3 1017 21 57 0 0 chr3 56705424 56705459 -102894324 + AT_rich Low_complexity Low_complexity 1 35 0 3 1017 305 318 111 13 chr3 56705621 56705774 -102894009 - HAL1-3A_ME LINE L1 -419 2439 2272 3 1017 326 241 12 12 chr3 56705801 56705885 -102893898 - B3 SINE B2 -92 124 41 3 1017 416 226 86 53 chr3 56705913 56706119 -102893664 - L1MC4 LINE L1 -266 7729 7448 3 1017 370 283 137 11 chr3 56706231 56706406 -102893377 - L1MB1 LINE L1 -130 6038 5842 3 1017 261 296 23 0 chr3 56706560 56706648 -102893135 + CT-rich Low_complexity Low_complexity 1 90 0 3 1017 33880 35 0 0 chr3 56707813 56713235 -102886548 + L1Md_T LINE L1 71 5589 -297 3 1017 9034 5 0 0 chr3 56713235 56714257 -102885526 + L1Md_T LINE L1 5590 6585 0 3 1017 288 0 0 0 chr3 56714718 56714750 -102885033 + (TTTA)n Simple_repeat Simple_repeat 4 35 0 3 1017 12831 253 70 21 chr3 56714808 56718255 -102881528 - Lx6 LINE L1 -26 7434 3395 3 1017 3217 27 24 20 chr3 56718255 56718664 -102881119 + IAPLTR2a LTR ERVK 1 411 0 3 1017 12831 234 74 15 chr3 56718664 56719954 -102879829 - Lx6 LINE L1 -2492 3394 2087 3 1017 222 91 0 0 chr3 56719954 56719987 -102879796 + (TGG)n Simple_repeat Simple_repeat 1 33 0 3 1017 12831 234 74 15 chr3 56719987 56720498 -102879285 - Lx6 LINE L1 -3800 2086 1559 3 1017 12884 103 12 3 chr3 56720585 56722739 -102877044 - L1VL2 LINE L1 -633 2982 809 3 1017 7331 70 1 5 chr3 56722733 56723846 -102875937 - L1Md_F2 LINE L1 0 6582 5474 3 1017 621 274 47 24 chr3 56724133 56724346 -102875437 + RLTR45 LTR ERVK 265 482 0 3 1017 19472 92 185 15 chr3 56724346 56728887 -102870896 - L1Md_F LINE L1 -402 5481 168 3 1017 3716 109 168 12 chr3 56728882 56729542 -102870241 - L1VL2 LINE L1 -5507 828 66 3 1017 1176 216 85 12 chr3 56729544 56730253 -102869530 - Lx6 LINE L1 -4306 1571 892 3 1017 236 220 83 92 chr3 56731374 56731494 -102868289 + RMER12 LTR ERVK 698 816 -506 3 1017 659 270 45 106 chr3 56731456 56731655 -102868128 - B3A SINE B2 -8 190 4 3 1017 462 400 88 73 chr3 56731897 56732226 -102867557 + MER45C DNA Tip100 73 406 -547 3 1017 2831 203 38 17 chr3 56733333 56733577 -102866206 - L1_Mur3 LINE L1 -3547 2333 2088 3 1017 222 91 0 0 chr3 56733577 56733610 -102866173 + (TGG)n Simple_repeat Simple_repeat 1 33 0 3 1017 2831 203 38 17 chr3 56733610 56734121 -102865662 - L1_Mur3 LINE L1 -3793 2087 1563 3 1017 12884 103 12 3 chr3 56734208 56736362 -102863421 - L1VL2 LINE L1 -633 2982 809 3 1017 7331 70 1 5 chr3 56736356 56737469 -102862314 - L1Md_F2 LINE L1 0 6582 5474 3 1017 621 274 47 24 chr3 56737756 56737969 -102861814 + RLTR45 LTR ERVK 265 482 0 3 1017 19472 92 185 15 chr3 56737969 56742510 -102857273 - L1Md_F LINE L1 -402 5481 168 3 1017 3716 109 168 12 chr3 56742505 56743165 -102856618 - L1VL2 LINE L1 -5507 828 66 3 1017 1176 216 85 12 chr3 56743167 56743876 -102855907 - L1_Mur3 LINE L1 -4306 1571 892 3 1017 236 220 83 92 chr3 56744997 56745117 -102854666 + RMER12 LTR ERVK 698 816 -506 3 1017 659 270 45 106 chr3 56745079 56745278 -102854505 - B3A SINE B2 -8 190 4 3 1017 462 400 88 73 chr3 56745520 56745849 -102853934 + MER45C DNA Tip100 73 406 -547 3 1017 504 0 0 0 chr3 56747676 56747732 -102852051 + (TG)n Simple_repeat Simple_repeat 2 57 0 3 1017 530 276 103 73 chr3 56747773 56748007 -102851776 - B4A SINE B4 -10 282 42 3 1017 26 50 0 0 chr3 56748185 56748225 -102851558 + AT_rich Low_complexity Low_complexity 1 40 0 3 1017 319 217 0 28 chr3 56748462 56748533 -102851250 + BC1_Mm scRNA scRNA 14 82 -70 3 1017 709 282 61 26 chr3 56748554 56748759 -102851024 + B4 SINE B4 4 220 -72 3 1017 573 15 0 0 chr3 56748759 56748825 -102850958 + (GGAA)n Simple_repeat Simple_repeat 3 68 0 3 1017 709 282 61 26 chr3 56748825 56748848 -102850935 + B4 SINE B4 221 240 -52 3 1017 495 0 0 0 chr3 56748909 56748964 -102850819 + (GA)n Simple_repeat Simple_repeat 1 55 0 3 1017 606 280 3 14 chr3 56749758 56749934 -102849849 - B3 SINE B2 -24 174 3 3 1017 261 0 0 0 chr3 56751664 56751693 -102848090 + (A)n Simple_repeat Simple_repeat 1 29 0 3 1017 387 0 0 0 chr3 56751796 56751839 -102847944 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 1017 6202 60 0 3 chr3 56752424 56753205 -102846578 - L1Md_F2 LINE L1 -1 6581 5803 3 1017 195 368 49 56 chr3 56753385 56753518 -102846265 + L2b LINE L2 2956 3085 -290 3 1017 1127 234 170 6 chr3 56753518 56753836 -102845947 + ORR1D2 LTR MaLR 1 370 0 3 127 745 230 113 16 chr3 56754036 56754230 -102845553 + B3 SINE B2 1 213 -3 3 1018 725 262 48 11 chr3 56755887 56756076 -102843707 + B3 SINE B2 2 197 -19 3 1018 243 200 0 0 chr3 56756281 56756331 -102843452 - L1MB2 LINE L1 -43 6128 6079 3 1018 926 222 38 10 chr3 56756766 56756975 -102842808 - B3 SINE B2 0 216 2 3 1018 329 333 40 27 chr3 56757156 56757304 -102842479 - MIRc SINE MIR -39 229 80 3 1018 1516 302 87 40 chr3 56757655 56758510 -102841273 + Lx8 LINE L1 6549 7443 -30 3 1018 266 329 18 24 chr3 56760049 56760217 -102839566 + L1M5 LINE L1 5636 5802 -322 3 1018 306 73 0 0 chr3 56760400 56760441 -102839342 + (TATAA)n Simple_repeat Simple_repeat 2 42 0 3 1018 210 71 0 0 chr3 56760936 56760964 -102838819 + (TG)n Simple_repeat Simple_repeat 1 28 0 3 1018 253 319 85 45 chr3 56763038 56763215 -102836568 + LTR37A LTR ERV1 18 201 -225 3 1018 1037 141 172 0 chr3 56763261 56763453 -102836330 - URR1A DNA MER1_type -1 225 1 3 1018 243 0 0 0 chr3 56763470 56763497 -102836286 + (CA)n Simple_repeat Simple_repeat 2 28 0 3 1018 356 335 147 40 chr3 56764071 56764370 -102835413 + LTR16A LTR ERVL 101 431 -20 3 1018 199 218 29 19 chr3 56764544 56764647 -102835136 + GA-rich Low_complexity Low_complexity 1 104 0 3 1018 214 95 0 45 chr3 56764623 56764667 -102835116 + (GGGA)n Simple_repeat Simple_repeat 2 43 0 3 1018 251 324 71 18 chr3 56765916 56766029 -102833754 - ORR1E LTR MaLR -222 137 19 3 1018 764 208 28 0 chr3 56766111 56766255 -102833528 - B1_Mur1 SINE Alu 0 149 2 3 1018 594 0 0 0 chr3 56766434 56766500 -102833283 + (GA)n Simple_repeat Simple_repeat 1 66 0 3 1018 213 185 246 0 chr3 56767964 56768029 -102831754 - MIRb SINE MIR 0 268 188 3 1018 855 252 14 5 chr3 56769889 56770096 -102829687 - B3 SINE B2 -6 210 2 3 1018 454 262 47 0 chr3 56770357 56770464 -102829319 + PB1D9 SINE Alu 9 120 0 3 1018 226 256 0 0 chr3 56770611 56770654 -102829129 + ID4 SINE ID 15 57 -26 3 1018 863 147 0 22 chr3 56770689 56770870 -102828913 + GA-rich Low_complexity Low_complexity 4 180 0 3 1018 432 0 0 0 chr3 56770934 56770982 -102828801 + (TCTA)n Simple_repeat Simple_repeat 1 48 0 3 1018 360 0 0 0 chr3 56771253 56771293 -102828490 + (TGG)n Simple_repeat Simple_repeat 2 41 0 3 1018 710 317 7 50 chr3 56771494 56771793 -102827990 - B4A SINE B4 -6 286 1 3 1018 866 230 59 15 chr3 56771934 56772137 -102827646 - B3 SINE B2 0 216 5 3 1018 26 0 0 0 chr3 56772676 56772702 -102827081 + GC_rich Low_complexity Low_complexity 1 26 0 3 1018 604 280 88 0 chr3 56773664 56773857 -102825926 + B3 SINE B2 1 210 -6 3 1018 576 261 27 47 chr3 56773878 56774027 -102825756 + B1_Mus1 SINE Alu 1 146 -2 3 1018 228 67 0 0 chr3 56774028 56774058 -102825725 + (CAA)n Simple_repeat Simple_repeat 2 31 0 3 1018 495 397 39 14 chr3 56774724 56775005 -102824778 - LTR33A LTR ERVL -226 294 7 3 1018 3368 169 36 10 chr3 56775176 56775756 -102824027 - RLTR17 LTR ERVK 0 692 98 3 1018 253 322 116 0 chr3 56776077 56776198 -102823585 - MIR SINE MIR -18 244 110 3 1018 561 30 0 0 chr3 56776263 56776330 -102823453 + (CA)n Simple_repeat Simple_repeat 1 67 0 3 1018 229 175 31 16 chr3 56776359 56776423 -102823360 + (TATATG)n Simple_repeat Simple_repeat 1 65 0 3 1018 22 35 0 0 chr3 56776660 56776689 -102823094 + AT_rich Low_complexity Low_complexity 1 29 0 4 1018 505 235 0 0 chr3 56776695 56776793 -102822990 + B3 SINE B2 2 99 -117 4 1018 3843 169 40 12 chr3 56777436 56778809 -102820974 + L1_Mur3 LINE L1 609 2020 -3860 4 1018 365 164 0 0 chr3 56778811 56778878 -102820905 - L1Md_Gf LINE L1 -6001 521 455 4 1018 8615 25 2 0 chr3 56778867 56779927 -102819856 + L1Md_T LINE L1 4525 5586 -297 4 1018 8615 25 0 0 chr3 56779927 56780922 -102818861 + L1Md_T LINE L1 5587 6581 -1 4 1018 1154 193 66 112 chr3 56780922 56781074 -102818709 + L1_Mur3 LINE L1 5616 5681 -763 4 1018 2992 120 22 2 chr3 56781064 56781558 -102818225 + L1_Mus3 LINE L1 4252 4755 -1128 4 1018 7262 98 4 3 chr3 56781558 56782655 -102817128 + L1_Mus3 LINE L1 5540 6637 -1 4 1018 1319 162 16 63 chr3 56782658 56782974 -102816809 + L1_Mur3 LINE L1 2151 2451 -3429 4 1018 611 236 44 27 chr3 56783145 56783328 -102816455 - RLTR28B LTR ERVL -295 186 1 4 1018 329 60 0 20 chr3 56783328 56783379 -102816404 + L1_Mur3 LINE L1 4229 4278 -1602 4 1018 245 189 40 0 chr3 56783419 56783493 -102816290 + L1_Mur3 LINE L1 4270 4346 -1534 4 1018 3732 239 93 48 chr3 56783492 56784738 -102815045 + Lx7 LINE L1 5684 6985 -711 4 1018 315 0 0 0 chr3 56784738 56784773 -102815010 + (CA)n Simple_repeat Simple_repeat 2 36 0 4 1018 4209 169 101 46 chr3 56785362 56785431 -102814352 + RLTR25A LTR ERVK 1 70 -1033 4 1018 4497 174 64 10 chr3 56785431 56786247 -102813536 + RMER13A LTR ERVK 1 860 0 4 1018 4209 169 101 46 chr3 56786247 56787019 -102812764 + RLTR25A LTR ERVK 71 873 -230 4 1018 307 41 41 0 chr3 56787019 56787068 -102812715 + (TTG)n Simple_repeat Simple_repeat 2 52 0 4 1018 4209 169 101 46 chr3 56787068 56787130 -102812653 + RLTR25A LTR ERVK 874 952 -151 4 1018 1019 205 60 84 chr3 56787454 56787752 -102812031 + RLTR25A LTR ERVK 813 1103 0 4 1018 904 308 133 43 chr3 56787949 56788172 -102811611 - MLT1C LTR MaLR -8 459 195 4 1018 180 111 0 0 chr3 56788172 56788199 -102811584 + (CG)n Simple_repeat Simple_repeat 1 27 0 4 1018 904 308 133 43 chr3 56788199 56788396 -102811387 - MLT1C LTR MaLR -273 194 1 4 1018 594 41 0 0 chr3 56788829 56788902 -102810881 + (TTTC)n Simple_repeat Simple_repeat 3 75 0 4 1018 231 36 0 0 chr3 56790382 56790410 -102809373 + (TCTG)n Simple_repeat Simple_repeat 2 29 0 4 1018 757 198 161 17 chr3 56791731 56791911 -102807872 + B3 SINE B2 1 206 -10 4 1018 235 297 47 0 chr3 56792375 56792439 -102807344 - ID SINE ID -153 71 5 4 1018 426 69 0 0 chr3 56792453 56792511 -102807272 + (TTCC)n Simple_repeat Simple_repeat 3 60 0 4 1018 402 21 0 0 chr3 56793054 56793101 -102806682 + (CA)n Simple_repeat Simple_repeat 2 48 0 4 1018 327 160 0 48 chr3 56793104 56793229 -102806554 + (CAGAGA)n Simple_repeat Simple_repeat 2 120 0 4 1018 308 218 0 11 chr3 56793539 56793627 -102806156 + A-rich Low_complexity Low_complexity 2 88 0 4 1018 958 326 124 14 chr3 56794050 56794542 -102805241 - MER89 LTR ERV1 -12 547 2 4 1018 202 200 0 0 chr3 56794658 56794698 -102805085 + A-rich Low_complexity Low_complexity 3 42 0 4 1018 337 317 48 8 chr3 56797100 56797224 -102802559 + MER57C2 LTR ERV1 67 195 -239 4 1018 759 295 72 0 chr3 56797372 56797565 -102802218 + B3 SINE B2 10 216 0 4 1018 204 40 0 0 chr3 56798088 56798113 -102801670 + (A)n Simple_repeat Simple_repeat 1 25 0 4 1018 189 195 0 0 chr3 56798475 56798516 -102801267 + GA-rich Low_complexity Low_complexity 1 41 0 4 1018 190 216 39 19 chr3 56799390 56799442 -102800341 + L2b LINE L2 3323 3375 0 4 1018 297 159 59 33 chr3 56800011 56800116 -102799667 - MTD LTR MaLR 0 419 275 4 1018 861 262 30 40 chr3 56800133 56800332 -102799451 + ORR1D2 LTR MaLR 25 221 -149 4 1018 1250 230 81 26 chr3 56800473 56800817 -102798966 - ORR1D2 LTR MaLR 0 370 8 4 1018 760 250 157 30 chr3 56801387 56801622 -102798161 + B4 SINE B4 2 266 -26 4 1018 492 18 0 0 chr3 56801627 56801684 -102798099 + (CA)n Simple_repeat Simple_repeat 2 58 0 4 1018 591 84 0 0 chr3 56801684 56801779 -102798004 + (GA)n Simple_repeat Simple_repeat 1 95 0 4 1018 200 157 39 0 chr3 56801781 56801832 -102797951 + (CATA)n Simple_repeat Simple_repeat 2 54 0 4 1018 355 250 48 9 chr3 56802888 56802997 -102796786 - PB1D10 SINE Alu -1 116 2 4 1018 2262 55 32 16 chr3 56803092 56803408 -102796375 - L1Md_F2 LINE L1 -3 6579 6259 4 1018 2675 56 3 0 chr3 56803683 56804021 -102795762 + L1Md_F2 LINE L1 6232 6570 -12 4 1018 22 56 0 0 chr3 56805072 56805108 -102794675 + AT_rich Low_complexity Low_complexity 1 36 0 4 1018 342 45 0 0 chr3 56807869 56807913 -102791870 + (TAAA)n Simple_repeat Simple_repeat 1 44 0 4 1018 301 321 115 14 chr3 56808166 56808384 -102791399 + L2 LINE L2 2647 2886 -533 4 1018 314 189 28 9 chr3 56808488 56808595 -102791188 + CT-rich Low_complexity Low_complexity 3 111 0 4 1018 653 315 84 50 chr3 56808854 56809175 -102790608 + MLT1F2 LTR MaLR 229 560 0 4 1018 826 202 58 39 chr3 56809660 56809866 -102789917 + B3 SINE B2 2 211 -5 4 1018 227 387 17 0 chr3 56809990 56810109 -102789674 + MLT2F LTR ERVL 490 610 -53 4 1018 811 232 83 0 chr3 56810414 56810595 -102789188 + B3 SINE B2 1 196 -20 4 1018 3151 74 0 12 chr3 56810598 56811010 -102788773 - MTB_Mm LTR MaLR 0 407 1 4 1018 186 340 122 10 chr3 56811762 56811860 -102787923 - MIRb SINE MIR -12 256 148 4 1018 332 213 6 19 chr3 56812009 56812157 -102787626 + (TA)n Simple_repeat Simple_repeat 1 146 0 4 1018 288 0 0 0 chr3 56812157 56812189 -102787594 + (TG)n Simple_repeat Simple_repeat 1 32 0 4 1018 332 213 6 19 chr3 56812189 56812198 -102787585 + (TA)n Simple_repeat Simple_repeat 2 10 0 4 1018 632 266 80 0 chr3 56812230 56812418 -102787365 + B3 SINE B2 1 203 -13 4 1018 216 258 140 38 chr3 56812841 56812998 -102786785 - L2a LINE L2 0 3426 3254 4 1018 727 174 124 38 chr3 56813000 56813185 -102786598 + B3 SINE B2 3 203 -13 4 1018 210 322 0 63 chr3 56813322 56813385 -102786398 + ID SINE ID 20 78 -146 4 1018 684 276 15 5 chr3 56813866 56814070 -102785713 - B3 SINE B2 -9 207 2 4 1018 831 242 87 42 chr3 56814436 56814677 -102785106 + RMER19B LTR ERVK 310 561 -341 4 1018 258 136 0 0 chr3 56815885 56815929 -102783854 + (TC)n Simple_repeat Simple_repeat 2 45 0 4 1018 21 36 0 0 chr3 56816009 56816037 -102783746 + AT_rich Low_complexity Low_complexity 1 28 0 4 1018 617 297 94 54 chr3 56816066 56816600 -102783183 - L1ME1 LINE L1 -56 6123 5569 4 1018 432 130 0 0 chr3 56816686 56816755 -102783028 + (CA)n Simple_repeat Simple_repeat 2 70 0 4 1018 22 0 0 0 chr3 56816875 56816897 -102782886 + AT_rich Low_complexity Low_complexity 1 22 0 4 1018 2276 95 0 31 chr3 56816906 56817175 -102782608 + L1_Mus2 LINE L1 6250 6515 -51 4 1018 5449 126 19 52 chr3 56817175 56818107 -102781676 + RMER17A2 LTR ERVK 1 902 -4 4 1018 2276 95 0 31 chr3 56818107 56818164 -102781619 + L1_Mus2 LINE L1 6516 6566 0 4 1018 608 318 16 11 chr3 56818450 56818662 -102781121 - MER57E2 LTR ERV1 -45 357 108 4 1018 5756 206 40 29 chr3 56818662 56820044 -102779739 + Lx2B LINE L1 5601 6997 -3 4 1018 332 262 0 12 chr3 56820142 56820223 -102779560 - LTR68 LTR ERV1 -304 436 357 4 1018 783 236 81 44 chr3 56820308 56820605 -102779178 - Lx8 LINE L1 -10 7463 7156 4 1018 459 0 0 0 chr3 56820951 56821002 -102778781 + (TTG)n Simple_repeat Simple_repeat 1 51 0 4 1018 222 37 0 0 chr3 56821544 56821571 -102778212 + (TAA)n Simple_repeat Simple_repeat 1 27 0 4 1018 351 0 0 0 chr3 56821578 56821617 -102778166 + (TG)n Simple_repeat Simple_repeat 2 40 0 4 1018 294 352 9 0 chr3 56821642 56821747 -102778036 - PB1D10 SINE Alu -8 109 4 4 1018 231 177 12 48 chr3 56822589 56822672 -102777111 + CT-rich Low_complexity Low_complexity 5 84 0 4 1018 7742 95 27 3 chr3 56822749 56824514 -102775269 + L1VL4 LINE L1 194 2005 -1554 4 1018 2996 22 0 116 chr3 56824515 56824928 -102774855 - RLTR10B2 LTR ERVK 0 365 1 4 1018 3933 119 8 6 chr3 56824928 56825616 -102774167 - IAPEY3-int LTR ERVK 0 7680 6965 4 1018 1439 100 100 0 chr3 56825616 56825845 -102773938 - IAP-d-int LTR ERVK -1287 5255 5004 4 1018 439 308 21 16 chr3 56825859 56826136 -102773647 - IAPEY3-int LTR ERVK -5530 1012 822 4 1018 2716 47 0 3 chr3 56826276 56826618 -102773165 - RLTR10-int LTR ERVK -995 992 652 4 1018 335 67 0 0 chr3 56826621 56826666 -102773117 - RLTR10-int LTR ERVK -6405 137 93 4 1018 463 107 51 57 chr3 56826666 56826824 -102772959 + CT-rich Low_complexity Low_complexity 3 159 0 4 1018 1278 68 6 6 chr3 56826921 56827099 -102772684 - RLTR10-int LTR ERVK -7403 178 1 4 1018 2940 36 3 64 chr3 56827100 56827488 -102772295 - RLTR10B2 LTR ERVK -1 364 1 4 1018 851 45 0 0 chr3 56827488 56827600 -102772183 + MusHAL1 LINE L1 1154 1265 -1447 4 1018 467 57 11 43 chr3 56827600 56827692 -102772091 + L1Md_F2 LINE L1 6494 6582 0 4 1018 9605 76 11 9 chr3 56827689 56829089 -102770694 + MusHAL1 LINE L1 1251 2653 -59 4 1018 685 131 7 21 chr3 56829098 56829206 -102770577 + polypurine Low_complexity Low_complexity 3 109 0 4 1018 1226 90 0 6 chr3 56829206 56829385 -102770398 + (GAAA)n Simple_repeat Simple_repeat 3 180 0 4 1018 685 131 7 21 chr3 56829385 56829416 -102770367 + polypurine Low_complexity Low_complexity 110 140 0 4 1018 497 267 10 0 chr3 56829416 56829517 -102770266 - B1_Mur2 SINE Alu -47 102 1 4 1018 969 123 0 0 chr3 56830017 56830163 -102769620 + URR1B DNA MER1_type 80 225 0 4 1018 532 73 24 0 chr3 56830323 56830405 -102769378 + (CA)n Simple_repeat Simple_repeat 2 85 0 4 1018 869 288 55 3 chr3 56830513 56830841 -102768942 + Lx8 LINE L1 6947 7291 -182 4 1018 8103 72 41 16 chr3 56830891 56832042 -102767741 + Lx3_Mus LINE L1 5823 7001 -8 4 1018 2092 177 31 0 chr3 56832149 56832505 -102767278 + ORR1B2 LTR MaLR 1 367 0 4 1018 659 274 11 68 chr3 56832508 56832684 -102767099 + B3A SINE B2 33 198 0 4 1018 1588 223 20 3 chr3 56832719 56833025 -102766758 - RLTR30 LTR ERV1 0 379 69 4 1018 203 301 159 61 chr3 56833288 56833451 -102766332 - MIRb SINE MIR -58 210 32 4 1018 2074 109 9 67 chr3 56833652 56833997 -102765786 - ORR1A4 LTR MaLR 0 329 5 4 1018 463 253 21 0 chr3 56834779 56834874 -102764909 - PB1D9 SINE Alu -21 99 3 4 1018 318 309 20 20 chr3 56834795 56834894 -102764889 - B4 SINE B4 -125 167 69 4 1018 266 0 0 0 chr3 56835801 56835840 -102763943 + L1Md_T LINE L1 6543 6581 -1 4 1018 339 287 96 0 chr3 56835968 56836062 -102763721 + B1_Mur2 SINE Alu 5 107 -42 5 1018 258 325 44 96 chr3 56835974 56836110 -102763673 + B4A SINE B4 97 225 -67 5 1018 868 222 117 0 chr3 56836217 56836397 -102763386 - B3 SINE B2 -15 201 1 5 1018 272 307 86 8 chr3 56836636 56836762 -102763021 + MIRb SINE MIR 56 195 -73 5 1018 793 237 5 25 chr3 56837923 56838122 -102761661 - Lx6 LINE L1 -1 7459 7265 5 1018 1910 220 83 21 chr3 56838126 56838231 -102761552 + Lx6 LINE L1 6776 6877 -583 5 1018 486 0 0 0 chr3 56838231 56838285 -102761498 + (GA)n Simple_repeat Simple_repeat 1 54 0 5 1018 1910 220 83 21 chr3 56838285 56838648 -102761135 + Lx6 LINE L1 6878 7272 -188 5 1018 225 300 68 10 chr3 56838665 56838857 -102760926 - L1M2 LINE L1 -3135 3008 2806 5 1018 630 282 19 32 chr3 56838858 56839012 -102760771 - B4A SINE B4 -139 153 2 5 1018 470 287 108 8 chr3 56839224 56839586 -102760197 + L1M4c LINE L1 2167 2565 -3817 5 1018 338 61 20 0 chr3 56839859 56839908 -102759875 + (TG)n Simple_repeat Simple_repeat 2 51 0 5 1018 301 261 67 22 chr3 56840247 56840337 -102759446 - L1ME1 LINE L1 -40 6139 6046 5 1018 197 382 59 0 chr3 56841990 56842058 -102757725 + MIRc SINE MIR 32 103 -165 5 1018 255 290 62 31 chr3 56842142 56842238 -102757545 - MIRb SINE MIR -99 169 71 5 1018 298 326 76 136 chr3 56842679 56843112 -102756671 - RMER10A LTR ERVL -24 418 12 5 1018 3703 73 10 8 chr3 56844078 56844576 -102755207 + L1Md_F2 LINE L1 6080 6578 -4 5 1018 541 279 69 53 chr3 56844588 56844784 -102754999 + B3A SINE B2 1 191 -7 5 1018 884 271 135 6 chr3 56846408 56846735 -102753048 + ORR1D2 LTR MaLR 2 370 0 5 1018 1172 125 27 0 chr3 56846781 56846965 -102752818 - B2_Mm2 SINE B2 -6 189 1 5 1018 204 40 0 0 chr3 56847149 56847174 -102752609 + (TAA)n Simple_repeat Simple_repeat 1 25 0 5 1018 673 229 45 36 chr3 56847187 56847376 -102752407 + B3 SINE B2 2 195 0 5 1018 270 357 109 83 chr3 56847477 56847633 -102752150 + B4 SINE B4 109 268 -24 5 1018 384 22 0 0 chr3 56848154 56848199 -102751584 + (TG)n Simple_repeat Simple_repeat 2 46 0 5 1018 487 271 7 41 chr3 56848552 56848698 -102751085 + MLT2B2 LTR ERVL 422 562 0 5 1018 306 164 0 0 chr3 56848703 56848758 -102751025 + (TA)n Simple_repeat Simple_repeat 2 56 0 5 1018 231 125 0 0 chr3 56849611 56849651 -102750132 + (CAAAA)n Simple_repeat Simple_repeat 2 41 0 5 1018 1130 286 0 0 chr3 56849784 56850060 -102749723 + RMER1B Other Other 1 276 -790 5 1018 666 25 0 0 chr3 56850065 56850145 -102749638 + (TG)n Simple_repeat Simple_repeat 1 80 0 5 1018 922 62 15 0 chr3 56850145 56850274 -102749509 + (GA)n Simple_repeat Simple_repeat 1 132 0 5 1018 233 274 0 14 chr3 56850883 56850957 -102748826 + CT-rich Low_complexity Low_complexity 2 74 0 5 1018 435 38 0 0 chr3 56851992 56852045 -102747738 + (TTTC)n Simple_repeat Simple_repeat 4 56 0 5 1018 629 149 9 0 chr3 56852046 56852160 -102747623 + CT-rich Low_complexity Low_complexity 1 115 0 5 1018 320 281 115 61 chr3 56852165 56852313 -102747470 - HAL1-3A_ME LINE L1 -419 2439 2284 5 1018 452 207 9 0 chr3 56852315 56852426 -102747357 + CT-rich Low_complexity Low_complexity 3 114 0 5 1018 577 309 43 39 chr3 56852593 56852849 -102746934 - MLT1B LTR MaLR -21 369 113 5 1018 344 300 10 0 chr3 56853055 56853155 -102746628 - MTE-int LTR MaLR -878 702 602 5 1018 276 100 0 0 chr3 56853198 56853238 -102746545 + (T)n Simple_repeat Simple_repeat 1 40 0 5 1018 1028 92 21 0 chr3 56853238 56853379 -102746404 - B1_Mus1 SINE Alu 0 148 5 5 1018 286 258 0 119 chr3 56853379 56853480 -102746303 - MTE-int LTR MaLR -1196 384 296 5 1018 733 297 28 14 chr3 56853458 56853670 -102746113 - ORR1E LTR MaLR -121 238 24 5 1018 284 253 86 74 chr3 56853755 56853930 -102745853 - L1M3 LINE L1 -2294 3846 3670 5 1018 4202 174 67 70 chr3 56854017 56854978 -102744805 + RLTR21 LTR ERVK 29 986 -586 5 1018 239 258 0 16 chr3 56854969 56855022 -102744761 + RMER12B LTR ERVK 1202 1253 -151 5 1018 398 66 33 0 chr3 56855022 56855083 -102744700 + (TATG)n Simple_repeat Simple_repeat 1 63 0 5 1018 473 285 113 38 chr3 56855083 56855118 -102744665 + RLTR21 LTR ERVK 1255 1289 -283 5 1018 396 0 0 0 chr3 56855118 56855162 -102744621 + (TG)n Simple_repeat Simple_repeat 1 44 0 5 1018 473 278 62 16 chr3 56855162 56855362 -102744421 + RLTR21 LTR ERVK 1285 1454 -118 5 1018 3829 151 26 19 chr3 56855626 56856356 -102743427 - RMER17A LTR ERVK -16 735 1 5 1018 1527 283 35 19 chr3 56857492 56858012 -102741771 - Lx6 LINE L1 -16 7444 6559 5 1018 2022 228 100 38 chr3 56858568 56859342 -102740441 + RMER1B Other Other 45 1062 -4 5 1018 459 0 0 0 chr3 56859381 56859432 -102740351 + (GA)n Simple_repeat Simple_repeat 2 52 0 5 1018 197 132 26 0 chr3 56859500 56859538 -102740245 + CT-rich Low_complexity Low_complexity 5 43 0 5 1018 435 19 0 0 chr3 56859594 56859646 -102740137 + (TG)n Simple_repeat Simple_repeat 1 52 0 5 1018 199 246 48 16 chr3 56860811 56860873 -102738910 - L2a LINE L2 -20 3406 3343 5 1018 215 306 89 9 chr3 56861014 56861126 -102738657 - L2a LINE L2 -775 2644 2524 5 1018 819 270 62 47 chr3 56861494 56861865 -102737918 - MTD LTR MaLR -14 405 6 5 1018 829 305 90 53 chr3 56862093 56862450 -102737333 - ORR1D2 LTR MaLR 0 370 1 5 1018 220 234 88 59 chr3 56862552 56862620 -102737163 - PB1D10 SINE Alu -44 73 4 5 1018 12082 7 0 0 chr3 56863302 56864749 -102735034 + L1Md_A LINE L1 2783 4229 -1654 5 1018 36734 9 1 1 chr3 56864751 56870750 -102729033 + L1Md_A LINE L1 1 5586 -297 5 1018 9037 4 0 0 chr3 56870750 56871746 -102728037 + L1Md_A LINE L1 5587 6582 0 5 1018 11564 10 0 0 chr3 56871746 56873116 -102726667 + L1Md_A LINE L1 4217 5586 -297 5 1018 8971 8 0 0 chr3 56873116 56874112 -102725671 + L1Md_A LINE L1 5587 6582 0 5 1018 258 32 0 0 chr3 56874524 56874555 -102725228 + (TC)n Simple_repeat Simple_repeat 2 32 0 5 1018 220 234 0 0 chr3 56874943 56874990 -102724793 + A-rich Low_complexity Low_complexity 1 47 0 5 1018 5039 93 10 23 chr3 56875037 56875766 -102724017 - L1Md_F2 LINE L1 -17 6565 5847 5 1018 366 209 0 117 chr3 56876218 56876321 -102723462 + MT2B LTR ERVL 43 133 -468 5 1018 1392 221 109 22 chr3 56876313 56876677 -102723106 + MT2B LTR ERVL 72 601 0 5 1018 804 286 5 25 chr3 56876801 56877002 -102722781 + B3A SINE B2 2 198 0 5 1018 522 83 0 0 chr3 56877002 56877074 -102722709 + (GA)n Simple_repeat Simple_repeat 1 72 0 5 1018 4260 239 39 21 chr3 56877301 56878329 -102721454 + RMER1B Other Other 1 1046 -20 5 1018 204 40 0 0 chr3 56878339 56878364 -102721419 + (TAAA)n Simple_repeat Simple_repeat 1 25 0 5 1018 578 248 43 0 chr3 56878401 56878542 -102721241 + B1_Mur2 SINE Alu 1 147 -2 5 1018 316 348 23 63 chr3 56879546 56879721 -102720062 - MLT1A1 LTR MaLR 0 408 241 5 1018 3920 109 5 5 chr3 56879926 56880489 -102719294 - L1_Mus4 LINE L1 -3 6633 6071 5 1018 219 333 13 0 chr3 56881288 56881363 -102718420 + ID4_ SINE ID 8 83 0 5 1018 1336 205 32 0 chr3 56881661 56881910 -102717873 - MTC LTR MaLR -58 363 107 5 1018 203 239 22 0 chr3 56881931 56881977 -102717806 + L2a LINE L2 3374 3420 -6 5 1018 186 365 0 0 chr3 56883077 56883129 -102716654 - L2b LINE L2 -82 3293 3242 5 1018 235 358 78 13 chr3 56883360 56883513 -102716270 - L2b LINE L2 -437 2982 2820 5 1018 222 37 0 0 chr3 56885017 56885044 -102714739 + (TTG)n Simple_repeat Simple_repeat 1 27 0 5 127 431 28 0 65 chr3 56885224 56885301 -102714482 + (TTTTG)n Simple_repeat Simple_repeat 2 73 0 5 1019 1162 61 0 0 chr3 56885304 56885451 -102714332 - B1_Mus2 SINE Alu 0 147 1 5 1019 210 171 0 0 chr3 56885586 56885627 -102714156 + GA-rich Low_complexity Low_complexity 1 41 0 5 1019 563 296 74 16 chr3 56886630 56886874 -102712909 + Lx8 LINE L1 6905 7162 -311 5 1019 629 320 177 4 chr3 56887619 56888093 -102711690 + L1MA4 LINE L1 5387 5942 -358 5 1019 422 254 57 124 chr3 56888102 56888295 -102711488 - B3A SINE B2 -14 181 2 5 1019 261 299 0 8 chr3 56888408 56888526 -102711257 + L1MA4 LINE L1 6061 6177 -123 5 1019 318 26 0 0 chr3 56888565 56888604 -102711179 + (TCTG)n Simple_repeat Simple_repeat 2 40 0 5 1019 511 233 70 75 chr3 56888899 56888933 -102710850 - B2_Mm2 SINE B2 -8 187 153 5 1019 234 91 0 0 chr3 56888933 56888966 -102710817 + (CA)n Simple_repeat Simple_repeat 2 34 0 5 1019 697 222 11 12 chr3 56888966 56889117 -102710666 - B3 SINE B2 -43 152 3 5 1019 23 0 0 0 chr3 56889259 56889282 -102710501 + AT_rich Low_complexity Low_complexity 1 23 0 5 1019 3729 36 0 5 chr3 56889319 56889767 -102710016 + L1Md_T LINE L1 6130 6575 -7 5 1019 314 23 0 23 chr3 56889771 56889815 -102709968 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 5 1019 238 302 87 17 chr3 56890064 56890236 -102709547 + L1MC4 LINE L1 6936 7119 -923 5 1019 345 186 0 0 chr3 56890438 56890508 -102709275 + GA-rich Low_complexity Low_complexity 3 72 0 5 1019 1144 123 0 0 chr3 56890822 56890984 -102708799 + B2_Mm2 SINE B2 1 162 -33 5 1019 405 0 0 0 chr3 56890985 56891030 -102708753 + (TAAA)n Simple_repeat Simple_repeat 3 47 0 5 1019 563 356 5 59 chr3 56891188 56891391 -102708392 + B4A SINE B4 99 290 -2 5 1019 227 256 0 0 chr3 56891397 56891440 -102708343 + polypurine Low_complexity Low_complexity 2 44 0 5 1019 445 294 6 69 chr3 56892011 56892186 -102707597 + RSINE1 SINE B4 2 165 0 5 1019 396 158 0 0 chr3 56892196 56892272 -102707511 + (CA)n Simple_repeat Simple_repeat 1 76 0 5 1019 572 216 17 17 chr3 56893025 56893204 -102706579 + GA-rich Low_complexity Low_complexity 2 180 0 5 1019 444 356 57 45 chr3 56893909 56894165 -102705618 - MLT1J2 LTR MaLR -153 258 1 5 1019 513 233 159 2 chr3 56894218 56894378 -102705405 - MTD LTR MaLR -16 403 218 5 1019 303 28 0 0 chr3 56894404 56894440 -102705343 + (CA)n Simple_repeat Simple_repeat 1 36 0 5 1019 1111 224 65 102 chr3 56895960 56896360 -102703423 + MT2A LTR ERVL 1 517 -84 5 1019 3344 239 60 37 chr3 56896381 56897270 -102702513 + ORR1C2-int LTR MaLR 462 1370 0 5 1019 1505 183 140 88 chr3 56897270 56897635 -102702148 + ORR1C2 LTR MaLR 1 384 0 5 1019 1470 253 40 29 chr3 56899158 56899533 -102700250 - MTEb LTR MaLR 0 379 1 6 1019 348 24 0 0 chr3 56901212 56901253 -102698530 + (CA)n Simple_repeat Simple_repeat 2 42 0 6 1019 363 167 0 0 chr3 56901258 56901348 -102698435 + CT-rich Low_complexity Low_complexity 1 90 0 6 1019 285 343 0 9 chr3 56902750 56902856 -102696927 - MIR3 SINE MIR -6 202 98 6 1019 231 323 20 20 chr3 56902982 56903080 -102696703 + MLT1H LTR MaLR 26 123 -426 6 1019 2596 133 246 9 chr3 56903758 56904310 -102695473 + RMER6C LTR ERVK 1 683 -7 6 1019 1895 201 58 20 chr3 56904390 56904786 -102694997 - MTD LTR MaLR -8 411 1 6 1019 188 34 0 33 chr3 56905106 56905136 -102694647 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 6 1019 396 0 0 0 chr3 56906108 56906152 -102693631 + (TC)n Simple_repeat Simple_repeat 1 44 0 6 1019 30 0 0 0 chr3 56906725 56906755 -102693028 + AT_rich Low_complexity Low_complexity 1 30 0 6 1019 1121 201 143 37 chr3 56907168 56907468 -102692315 - IAPEY3_LTR LTR ERVK 0 332 1 6 1019 284 296 0 14 chr3 56907594 56907666 -102692117 + tRNA-Ala-GCY_ tRNA tRNA 3 73 -2 6 1019 387 0 0 0 chr3 56907829 56907872 -102691911 + (TC)n Simple_repeat Simple_repeat 2 44 0 6 1019 7267 72 5 1 chr3 56907878 56909144 -102690639 - L1Md_F2 LINE L1 -12 6570 5299 6 1019 1202 175 0 0 chr3 56909143 56909366 -102690417 + L1Md_F LINE L1 295 517 -6002 6 1019 510 280 0 8 chr3 56909368 56909487 -102690296 - ID_B1 SINE B4 -28 196 79 6 1019 454 252 41 27 chr3 56909657 56909804 -102689979 + ORR1D2 LTR MaLR 221 369 -1 6 1019 412 169 0 0 chr3 56910481 56910546 -102689237 + ORR1C1 LTR MaLR 302 366 -12 6 1019 1051 214 55 137 chr3 56910587 56910736 -102689047 - Lx7 LINE L1 -2 7694 7538 6 1019 2041 189 5 11 chr3 56910736 56911116 -102688667 + ORR1C1 LTR MaLR 1 378 0 6 1019 1051 214 55 137 chr3 56911116 56911454 -102688329 - Lx7 LINE L1 -159 7537 7247 6 1019 2113 35 0 0 chr3 56911451 56911710 -102688073 - L1Md_A LINE L1 -329 6253 5995 6 1019 2828 18 6 0 chr3 56911710 56912039 -102687744 + L1Md_A LINE L1 6252 6582 0 6 1019 2146 80 0 0 chr3 56912079 56912378 -102687405 + L1_Mus3 LINE L1 5587 5885 -753 6 1019 4627 155 43 113 chr3 56912381 56913668 -102686115 - L1_Mur3 LINE L1 -2913 2967 1771 6 1019 608 211 0 0 chr3 56914005 56914109 -102685674 + B3 SINE B2 1 104 -112 6 1019 495 51 0 49 chr3 56914314 56914396 -102685387 - L1Md_F2 LINE L1 0 6582 6505 6 1019 186 206 0 0 chr3 56914837 56914871 -102684912 + L2a LINE L2 3378 3411 -15 6 1019 492 153 0 0 chr3 56915058 56915143 -102684640 + T-rich Low_complexity Low_complexity 1 85 0 6 1019 423 314 106 12 chr3 56915224 56915385 -102684398 - MER2 DNA MER2_type -145 200 25 6 1019 456 173 0 0 chr3 56915405 56915480 -102684303 - ID4_ SINE ID -6 77 3 6 1019 3399 118 0 0 chr3 56915938 56916498 -102683285 - Lx3B LINE L1 -1046 5927 5371 6 1019 700 193 0 7 chr3 56916498 56916644 -102683139 + Lx3A LINE L1 6829 6973 -8 6 1019 23 33 0 0 chr3 56916781 56916811 -102682972 + AT_rich Low_complexity Low_complexity 1 30 0 6 1019 233 260 53 27 chr3 56917074 56917149 -102682634 - Lx7 LINE L1 -442 7254 7178 6 1019 2842 221 96 32 chr3 56917203 56917955 -102681828 - Lx6 LINE L1 -169 7291 6492 6 1019 408 314 37 53 chr3 56919665 56920001 -102679782 - Lx9 LINE L1 0 7473 7151 6 1019 289 258 33 16 chr3 56920471 56920593 -102679190 - Lx9 LINE L1 -178 7466 7343 6 1019 271 322 22 11 chr3 56922501 56922592 -102677191 - MLT1C LTR MaLR -38 429 338 6 1019 279 79 0 0 chr3 56922726 56922764 -102677019 + (CA)n Simple_repeat Simple_repeat 1 38 0 6 1019 272 308 54 11 chr3 56923094 56923186 -102676597 - PB1D10 SINE Alu -4 113 18 6 1019 307 333 35 44 chr3 56924385 56924498 -102675285 + B3 SINE B2 3 114 -102 6 1019 5069 25 0 0 chr3 56924498 56925205 -102674578 - L1Md_T LINE L1 -607 5975 5269 6 1019 5085 32 0 2 chr3 56925205 56925799 -102673984 + L1Md_T LINE L1 5990 6582 0 6 1019 264 297 53 13 chr3 56925802 56925877 -102673906 + B3A SINE B2 99 176 -22 6 1019 271 157 29 0 chr3 56925884 56925954 -102673829 + (CATA)n Simple_repeat Simple_repeat 4 75 0 6 1019 892 242 30 10 chr3 56926709 56926909 -102672874 - B3 SINE B2 -10 206 3 6 1019 560 133 17 17 chr3 56927069 56927184 -102672599 + Lx LINE L1 6540 6654 0 6 1019 587 231 0 0 chr3 56927202 56927310 -102672473 + B3 SINE B2 27 134 -82 6 1019 466 324 21 43 chr3 56927360 56927547 -102672236 - B3A SINE B2 -15 183 1 6 1019 616 246 15 0 chr3 56928208 56928342 -102671441 - B4A SINE B4 -18 274 139 6 1019 269 108 0 0 chr3 56928371 56928408 -102671375 - tRNA-Phe-TTY tRNA tRNA -38 38 2 6 1019 259 286 0 0 chr3 56928613 56928669 -102671114 - PB1D10 SINE Alu -11 106 51 6 1019 1189 79 48 0 chr3 56928856 56929021 -102670762 - L1_Mus1 LINE L1 -1 6566 6394 6 1019 230 231 71 71 chr3 56930595 56930693 -102669090 + L2a LINE L2 3274 3371 -55 6 1019 332 252 48 19 chr3 56931032 56931137 -102668646 + MTEa LTR MaLR 272 379 0 6 1019 28 29 0 0 chr3 56932046 56932081 -102667702 + AT_rich Low_complexity Low_complexity 1 35 0 6 1019 822 214 162 22 chr3 56933035 56933264 -102666519 - MTE2a LTR MaLR 0 379 119 6 1019 5825 194 57 23 chr3 56933751 56935612 -102664171 - Lx7 LINE L1 -160 7536 5337 6 1019 3277 30 2 10 chr3 56935612 56936009 -102663774 - L1Md_A LINE L1 -1 6581 6188 6 1019 5487 171 32 36 chr3 56936009 56936663 -102663120 - Lx7 LINE L1 -544 5336 4679 6 1019 462 211 165 0 chr3 56937653 56937762 -102662021 - B3 SINE B2 -86 130 4 6 1019 195 42 0 0 chr3 56937942 56937966 -102661817 + (TTTTA)n Simple_repeat Simple_repeat 4 27 0 6 1019 1170 56 14 0 chr3 56937968 56938112 -102661671 - B1_Mus2 SINE Alu 0 147 2 6 1019 303 28 0 0 chr3 56938669 56938705 -102661078 + (TTG)n Simple_repeat Simple_repeat 3 38 0 6 1019 1492 202 52 76 chr3 56938757 56939138 -102660645 + ORR1C2 LTR MaLR 3 374 -10 6 1019 22 70 0 0 chr3 56939229 56939272 -102660511 + AT_rich Low_complexity Low_complexity 1 43 0 6 1019 253 207 11 44 chr3 56942793 56942884 -102656899 + A-rich Low_complexity Low_complexity 4 91 0 6 1019 270 0 0 0 chr3 56943072 56943102 -102656681 + (TTCA)n Simple_repeat Simple_repeat 3 32 0 6 1019 3786 209 45 47 chr3 56943118 56944011 -102655772 - Lx6 LINE L1 -189 7271 6381 6 1019 3543 197 25 9 chr3 56944015 56945170 -102654613 + Lx7 LINE L1 5197 6378 -1318 6 1019 813 250 10 24 chr3 56945267 56945476 -102654307 - B3 SINE B2 -6 210 5 6 1019 742 292 52 45 chr3 56946955 56947245 -102652538 + B4A SINE B4 1 292 0 6 1019 232 200 40 0 chr3 56947378 56947428 -102652355 + (TG)n Simple_repeat Simple_repeat 1 52 0 6 1019 400 318 20 33 chr3 56947442 56947595 -102652188 - RSINE1 SINE B4 -12 153 3 6 1019 335 108 31 0 chr3 56947632 56947697 -102652086 + (ATATG)n Simple_repeat Simple_repeat 2 68 0 6 1019 26 64 0 0 chr3 56947797 56947844 -102651939 + AT_rich Low_complexity Low_complexity 1 47 0 6 1019 32 101 0 0 chr3 56948072 56948181 -102651602 + AT_rich Low_complexity Low_complexity 1 109 0 6 1019 739 155 77 49 chr3 56948236 56948419 -102651364 + Lx7 LINE L1 7509 7696 0 6 1019 1298 158 73 52 chr3 56949381 56949668 -102650115 + MTE2b LTR MaLR 85 377 -2 6 1019 792 258 74 62 chr3 56950211 56950550 -102649233 + RLTR28B LTR ERVL 110 452 -29 6 1019 5310 42 0 0 chr3 56950751 56951388 -102648395 + L1Md_T LINE L1 5946 6582 0 6 1019 5842 14 0 0 chr3 56951390 56952048 -102647735 + L1Md_A LINE L1 5925 6582 0 6 1019 25 31 0 0 chr3 56952077 56952109 -102647674 + AT_rich Low_complexity Low_complexity 1 32 0 6 1019 204 358 77 44 chr3 56953586 56953767 -102646016 - MIR SINE MIR -70 192 6 6 1019 1117 76 0 7 chr3 56954540 56954686 -102645097 + B1_Mus1 SINE Alu 3 147 -1 6 1019 405 301 125 14 chr3 56954904 56955200 -102644583 + RMER20B LTR ERVK 147 469 -47 6 1019 2504 107 19 39 chr3 56955323 56955733 -102644050 - Lx LINE L1 0 6654 6253 6 1019 226 171 49 0 chr3 56956492 56956533 -102643250 - MLT2B3 LTR ERVL -250 304 262 6 1019 355 239 67 12 chr3 56956539 56956675 -102643108 + Lx9 LINE L1 7049 7311 -333 6 1019 271 265 12 12 chr3 56956851 56956935 -102642848 + (TA)n Simple_repeat Simple_repeat 1 84 0 6 1019 339 202 0 0 chr3 56956961 56957040 -102642743 + (CA)n Simple_repeat Simple_repeat 2 80 0 6 1019 795 21 0 0 chr3 56957937 56958030 -102641753 + (GAAA)n Simple_repeat Simple_repeat 2 94 0 6 1019 447 68 0 0 chr3 56958714 56958773 -102641010 + (TCTA)n Simple_repeat Simple_repeat 4 62 0 6 1019 264 306 14 14 chr3 56958784 56958857 -102640926 - ID4_ SINE ID -10 73 1 6 1019 522 46 0 0 chr3 56959330 56959395 -102640388 + (TGGA)n Simple_repeat Simple_repeat 1 65 0 6 1019 21 0 0 0 chr3 56959546 56959567 -102640216 + AT_rich Low_complexity Low_complexity 1 21 0 6 1019 2160 128 38 6 chr3 56960015 56960354 -102639429 + ORR1B2 LTR MaLR 2 351 -16 6 1019 1004 161 24 0 chr3 56960344 56960512 -102639271 - ORR1B2 LTR MaLR -194 173 2 6 1019 960 198 146 0 chr3 56960671 56960872 -102638911 + ORR1B2-int LTR MaLR 413 649 -860 6 1019 330 234 65 130 chr3 56960872 56960980 -102638803 + B1_Mus2 SINE Alu 3 103 -44 6 1019 509 203 138 0 chr3 56960938 56961061 -102638722 + B3 SINE B2 74 213 -3 6 1019 249 273 34 11 chr3 56961581 56961670 -102638113 - Lx9 LINE L1 -619 7025 6935 6 1019 594 81 23 0 chr3 56961736 56961823 -102637960 - Lx9 LINE L1 -697 6947 6859 6 1019 230 233 0 0 chr3 56961831 56961874 -102637909 + RMER20B LTR ERVK 16 58 -569 6 1019 260 202 149 35 chr3 56962770 56962857 -102636926 + RLTR19-int LTR ERVK 3857 3953 -2184 6 1019 2659 253 26 9 chr3 56963250 56963933 -102635850 + MERVK26-int LTR ERVK 6223 6917 -2 7 1019 1595 139 0 16 chr3 56963936 56964191 -102635592 + RMER20B LTR ERVK 1 251 -376 7 1019 1198 226 12 43 chr3 56964202 56964456 -102635327 + RMER20B LTR ERVK 377 622 -5 7 1019 1266 228 18 0 chr3 56964456 56964732 -102635051 - Lx9 LINE L1 -826 6818 6538 7 1019 294 272 101 50 chr3 56965069 56965228 -102634555 - RMER15 LTR ERVL -4 571 405 7 1019 1775 215 63 46 chr3 56966317 56966843 -102632940 - RMER17C-int LTR ERVK 0 3238 2704 7 1019 1433 138 117 36 chr3 56966843 56967152 -102632631 - RLTR9E LTR ERVK 0 409 76 7 1019 448 158 26 122 chr3 56967165 56967335 -102632448 - RMER17C-int LTR ERVK -528 2710 2607 7 1019 239 152 0 21 chr3 56967410 56967457 -102632326 + LSU-rRNA_Hsa rRNA rRNA 4208 4253 -782 7 1019 510 177 0 74 chr3 56967457 56967579 -102632204 - RMER17C-int LTR ERVK -707 2531 2419 7 1019 400 127 0 102 chr3 56967618 56967706 -102632077 - RMER17C-int LTR ERVK -3839 2298 2220 7 1019 322 239 45 0 chr3 56967910 56967998 -102631785 - RMER17C-int LTR ERVK -5059 1078 987 7 1019 22 0 0 0 chr3 56968185 56968207 -102631576 + AT_rich Low_complexity Low_complexity 1 22 0 7 1019 883 206 75 13 chr3 56968210 56968436 -102631347 - Lx3C LINE L1 -4 6972 6733 7 1019 726 202 43 33 chr3 56969549 56969759 -102630024 - L1MB8 LINE L1 -282 5896 5685 7 1019 558 0 0 0 chr3 56969821 56969883 -102629900 + (TAGA)n Simple_repeat Simple_repeat 1 62 0 7 1019 621 61 0 0 chr3 56969926 56970008 -102629775 + (TA)n Simple_repeat Simple_repeat 2 83 0 7 1019 897 236 128 62 chr3 56970317 56970738 -102629045 - RodERV21-int LTR ERV1 -4169 822 374 7 1019 570 285 39 35 chr3 56970734 56970963 -102628820 - RodERV21-int LTR ERV1 -4745 246 17 7 1019 695 226 97 0 chr3 56970996 56971151 -102628632 - RLTR17 LTR ERVK 0 692 523 7 1019 428 161 25 0 chr3 56971157 56971238 -102628545 - MYSERV16_I-int LTR ERVK -445 1881 1799 7 1019 2882 145 80 6 chr3 56971238 56971725 -102628058 - RLTR17 LTR ERVK -169 523 1 7 1019 1986 224 29 32 chr3 56971725 56972320 -102627463 - RMER3D-int LTR ERVK 0 2842 2250 7 1019 434 322 118 26 chr3 56972321 56972627 -102627156 - RMER17C LTR ERVK -62 348 15 7 1019 229 276 0 22 chr3 56972650 56972739 -102627044 - L1M3 LINE L1 -2167 3973 3887 7 1019 481 272 176 0 chr3 56974385 56974521 -102625262 - B3 SINE B2 -56 160 1 7 1019 1376 186 70 18 chr3 56974539 56974823 -102624960 + Lx7 LINE L1 6687 6985 -711 7 1019 1642 138 56 66 chr3 56974828 56975223 -102624560 + RMER17C LTR ERVK 17 407 -3 7 1019 669 220 60 35 chr3 56975235 56975539 -102624244 + Lx7 LINE L1 7014 7590 -106 7 1019 417 123 0 0 chr3 56975539 56975604 -102624179 + (TAGA)n Simple_repeat Simple_repeat 4 68 0 7 1019 258 280 11 11 chr3 56975606 56975700 -102624083 + Lx7 LINE L1 7578 7671 -25 7 1019 1413 51 0 0 chr3 56975712 56975890 -102623893 + (GAAA)n Simple_repeat Simple_repeat 1 178 0 7 1019 1559 179 27 82 chr3 56975890 56976291 -102623492 - RMER17C LTR ERVK -31 379 1 7 1019 1529 268 35 5 chr3 56977106 56977504 -102622279 - Lx6 LINE L1 -171 7289 6880 7 1019 6779 159 30 15 chr3 56977513 56978829 -102620954 - L1_Mur3 LINE L1 -124 5756 4422 7 1019 1164 276 78 57 chr3 56978840 56979352 -102620431 - Lx5 LINE L1 -44 7416 6506 7 1019 2369 254 50 19 chr3 56979385 56980088 -102619695 - Lx5 LINE L1 -687 6363 5639 7 1019 1682 154 18 68 chr3 56980094 56980438 -102619345 + Lx LINE L1 5323 5655 -999 7 1019 8714 159 86 184 chr3 56980438 56981888 -102617895 - L1_Mur3 LINE L1 -1460 4420 2820 7 1019 226 268 80 30 chr3 56981888 56981988 -102617795 + RLTR6_Mm LTR ERV1 327 431 -223 7 1019 8714 159 86 184 chr3 56981988 56982127 -102617656 - L1_Mur3 LINE L1 -1460 2819 2665 7 1019 2222 129 0 9 chr3 56982127 56982456 -102617327 - ORR1A3 LTR MaLR 0 326 1 7 1019 8714 159 86 184 chr3 56982456 56983129 -102616654 - L1_Mur3 LINE L1 -3216 2664 2061 7 1019 288 0 0 0 chr3 56983129 56983161 -102616622 + (TG)n Simple_repeat Simple_repeat 1 32 0 7 1019 537 16 0 0 chr3 56983161 56983222 -102616561 + (GA)n Simple_repeat Simple_repeat 1 62 0 7 1019 8714 159 86 184 chr3 56983222 56983343 -102616440 - L1_Mur3 LINE L1 -3820 2060 1978 7 1019 5147 72 79 0 chr3 56983343 56984052 -102615731 - L1_Mus4 LINE L1 -1 6635 5871 7 1019 258 32 0 0 chr3 56984056 56984087 -102615696 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 7 1019 8714 159 86 184 chr3 56984087 56984234 -102615549 - L1_Mur3 LINE L1 -3903 1977 1834 7 1019 2223 150 0 11 chr3 56984234 56984592 -102615191 + ORR1B1 LTR MaLR 41 394 0 7 1019 8714 159 86 184 chr3 56984592 56984879 -102614904 - L1_Mur3 LINE L1 -3903 1833 1549 7 1019 261 0 0 0 chr3 56984879 56984908 -102614875 + (TTG)n Simple_repeat Simple_repeat 1 29 0 7 1019 8714 208 85 50 chr3 56984908 56986253 -102613530 - L1_Mur3 LINE L1 -4332 1548 57 7 1019 332 278 32 53 chr3 56986310 56986405 -102613378 + ID_B1 SINE B4 130 222 -2 7 1019 31968 70 1 16 chr3 56986494 56991646 -102608137 + L1Md_F2 LINE L1 511 5586 -297 7 1019 8068 52 2 0 chr3 56991646 56992640 -102607143 + L1Md_F2 LINE L1 5587 6582 0 7 1019 224 211 13 0 chr3 56992915 56992991 -102606792 + (TA)n Simple_repeat Simple_repeat 2 78 0 7 1019 354 98 0 0 chr3 56993415 56993466 -102606317 + (CA)n Simple_repeat Simple_repeat 2 52 0 7 1019 390 260 59 20 chr3 56993859 56993961 -102605822 + PB1D10 SINE Alu 12 117 0 7 1019 324 321 95 31 chr3 56993970 56994192 -102605591 + MIRb SINE MIR 26 261 -7 7 1019 1857 208 136 0 chr3 56995080 56995557 -102604226 + RMER1C Other Other 786 1327 -15 7 1019 711 254 72 6 chr3 56996321 56996487 -102603296 + B3 SINE B2 36 212 -4 7 1019 870 135 11 6 chr3 56996496 56996675 -102603108 + (TA)n Simple_repeat Simple_repeat 1 180 0 7 1019 276 277 135 14 chr3 56997237 56997470 -102602313 - L1MA7 LINE L1 -82 6209 5953 7 1019 843 161 0 8 chr3 56997504 56997635 -102602148 - B3 SINE B2 -86 130 1 7 1019 438 326 45 45 chr3 56998038 56998324 -102601459 + B4A SINE B4 2 287 -5 7 1019 1525 153 8 19 chr3 56998328 56998588 -102601195 - MTB_Mm LTR MaLR -150 257 1 7 1019 5760 122 54 7 chr3 56998969 57000000 -102599783 + L1_Mur2 LINE L1 2929 4008 -1869 7 1019 9037 170 37 26 chr3 57000000 57002967 -102596816 + Lx5 LINE L1 4009 7030 -20 1 1019 6711 122 14 4 chr3 57002977 57004601 -102595182 - L1_Mus4 LINE L1 -4 6632 4998 2 1019 8004 163 36 22 chr3 57004605 57006195 -102593588 - L1_Mur2 LINE L1 -1318 4559 2947 3 1019 1136 82 0 13 chr3 57006195 57006344 -102593439 - B1_Mm SINE Alu 0 147 1 4 1019 8004 163 36 22 chr3 57006344 57006536 -102593247 - L1_Mur2 LINE L1 -2931 2946 2752 3 1019 4190 131 4 18 chr3 57006521 57007636 -102592147 - L1VL4 LINE L1 -2291 1268 173 5 1019 212 0 36 0 chr3 57007677 57007705 -102592078 + (TAAAA)n Simple_repeat Simple_repeat 3 31 0 6 1019 3982 275 66 34 chr3 57008289 57010376 -102589407 + MurERV4-int LTR ERVK 530 2915 -2345 7 1019 2077 241 59 10 chr3 57010387 57011000 -102588783 + MurERV4-int LTR ERVK 3100 3742 -1518 7 127 27527 126 24 17 chr3 57011002 57016856 -102582927 + L1_Mus2 LINE L1 421 6350 -216 8 1020 477 0 0 0 chr3 57016856 57016909 -102582874 + (CA)n Simple_repeat Simple_repeat 2 54 0 9 1020 5331 107 78 53 chr3 57016909 57017146 -102582637 + L1_Mus2 LINE L1 6351 6566 0 8 1020 3365 248 67 80 chr3 57017147 57018357 -102581426 + MYSERV6-int LTR ERVK 3182 4364 -4595 1 1020 1017 170 14 28 chr3 57018357 57018569 -102581214 - Lx4A LINE L1 -3 7055 6847 1 1020 3365 248 67 80 chr3 57018569 57018784 -102580999 + MYSERV6-int LTR ERVK 4365 4588 -4371 1 1020 186 43 0 0 chr3 57019125 57019148 -102580635 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 1020 25 0 0 0 chr3 57020285 57020310 -102579473 + AT_rich Low_complexity Low_complexity 1 25 0 1 1020 2138 163 10 29 chr3 57022209 57022626 -102577157 - RLTR9E LTR ERVK 0 409 1 1 1020 195 65 65 0 chr3 57023346 57023392 -102576391 + (TTTTG)n Simple_repeat Simple_repeat 2 50 0 1 1020 548 220 158 6 chr3 57023519 57023702 -102576081 + L1Md_F LINE L1 492 702 -5817 1 1020 609 14 0 0 chr3 57023702 57023772 -102576011 + (TTTC)n Simple_repeat Simple_repeat 3 72 0 1 1020 1072 82 0 0 chr3 57023772 57023906 -102575877 - B1_Mus1 SINE Alu -14 134 1 1 1020 1311 191 8 0 chr3 57023906 57024141 -102575642 - ORR1B2 LTR MaLR -76 291 55 1 1020 940 115 13 6 chr3 57024147 57024305 -102575478 + (GAAA)n Simple_repeat Simple_repeat 2 160 0 2 1020 473 117 13 0 chr3 57024308 57024385 -102575398 + ORR1B1 LTR MaLR 309 386 -8 2 1020 543 191 227 11 chr3 57024388 57024573 -102575210 - L1_Mur3 LINE L1 -3683 2197 1973 2 1020 277 211 0 17 chr3 57024575 57024633 -102575150 - ORR1B2 LTR MaLR -310 57 1 1 1020 2985 168 110 21 chr3 57024642 57025371 -102574412 + L1_Mur3 LINE L1 2199 2992 -2888 2 1020 551 189 0 8 chr3 57025371 57025494 -102574289 + (TA)n Simple_repeat Simple_repeat 2 123 0 2 1020 1031 225 25 50 chr3 57026151 57026432 -102573351 + RMER1C Other Other 23 296 -1046 2 1020 267 356 0 0 chr3 57026416 57026520 -102573263 + RMER1B Other Other 50 153 -913 2 1020 359 234 36 10 chr3 57026926 57027090 -102572693 - MMERVK10C-int LTR ERVK -2361 5220 5125 2 1020 1961 170 53 0 chr3 57027201 57027542 -102572241 + ORR1B2 LTR MaLR 1 359 -8 2 1020 940 226 9 47 chr3 57028505 57028737 -102571046 - URR1B DNA MER1_type -2 223 1 2 1020 1586 192 41 15 chr3 57030861 57031199 -102568584 + Lx5 LINE L1 6622 6968 -82 3 1020 1254 178 34 211 chr3 57032883 57033361 -102566422 + ORR1B1 LTR MaLR 2 394 0 3 1020 513 0 0 0 chr3 57033418 57033475 -102566308 + (CATA)n Simple_repeat Simple_repeat 2 58 0 3 1020 213 65 0 0 chr3 57033476 57033507 -102566276 + (CAGA)n Simple_repeat Simple_repeat 2 32 0 3 1020 348 24 0 0 chr3 57034130 57034171 -102565612 + (CA)n Simple_repeat Simple_repeat 2 42 0 3 1020 24 53 0 0 chr3 57034997 57035035 -102564748 + AT_rich Low_complexity Low_complexity 1 38 0 3 1020 2538 226 43 51 chr3 57035113 57035785 -102563998 - Lx6 LINE L1 -714 6746 6080 3 1020 1937 184 47 19 chr3 57035796 57036269 -102563514 + Lx6 LINE L1 5459 5948 -1512 3 1020 414 0 0 0 chr3 57036269 57036315 -102563468 + (TAGA)n Simple_repeat Simple_repeat 3 48 0 3 1020 939 201 53 135 chr3 57036361 57036717 -102563066 - MTD-int LTR MaLR -931 327 1 3 1020 823 243 28 26 chr3 57036721 57036963 -102562820 - MTD LTR MaLR -8 413 154 3 1020 396 280 80 0 chr3 57036968 57037143 -102562640 + L1MA8 LINE L1 5751 5939 -352 4 1020 228 200 0 0 chr3 57037917 57037982 -102561801 + CT-rich Low_complexity Low_complexity 2 66 0 4 1020 887 123 6 0 chr3 57037991 57038154 -102561629 + (TC)n Simple_repeat Simple_repeat 1 164 0 4 1020 315 65 0 0 chr3 57038154 57038199 -102561584 + (CA)n Simple_repeat Simple_repeat 1 46 0 4 1020 668 177 24 0 chr3 57038784 57038908 -102560875 + URR1A DNA MER1_type 34 160 -66 4 1020 49 18 0 0 chr3 57038927 57038983 -102560800 + AT_rich Low_complexity Low_complexity 1 56 0 4 1020 258 297 11 32 chr3 57039360 57039454 -102560329 - MTEa LTR MaLR 0 379 288 4 1020 1010 112 0 0 chr3 57039454 57039597 -102560186 - L1_Mur2 LINE L1 -242 5635 5493 4 1020 3516 188 127 14 chr3 57039596 57040487 -102559296 + L1_Mur1 LINE L1 3990 4981 -905 4 1020 2698 28 6 50 chr3 57040487 57040829 -102558954 - IAPLTR2b LTR ERVK 0 327 1 4 1020 6024 54 12 18 chr3 57040831 57041663 -102558120 - IAPEz-int LTR ERVK -2 6479 5653 4 1020 10751 71 35 82 chr3 57041658 57043433 -102556350 - IAPEz-int LTR ERVK -4781 1700 9 4 1020 2677 31 6 50 chr3 57043434 57043774 -102556009 - IAPLTR2b LTR ERVK 0 327 3 5 1020 2921 139 25 4 chr3 57043776 57044288 -102555495 + L1_Mur2 LINE L1 4967 5489 -388 5 1020 1526 241 109 132 chr3 57044291 57044820 -102554963 - RLTR19-int LTR ERVK -2105 4032 3572 5 1020 7151 100 11 12 chr3 57044820 57045844 -102553939 - RLTR13D5 LTR ERVK 0 1023 1 5 1020 1526 254 127 134 chr3 57045844 57046901 -102552882 - RLTR19-int LTR ERVK -2566 3571 2520 5 1020 3553 132 10 27 chr3 57046901 57047486 -102552297 - Lx2B LINE L1 -2 6998 6424 5 1020 1526 254 127 134 chr3 57047486 57047763 -102552020 - RLTR19-int LTR ERVK -3618 2519 2222 5 1020 319 214 20 10 chr3 57047757 57047856 -102551927 - RLTR19-int LTR ERVK -3553 1969 1870 5 1020 282 120 40 0 chr3 57048310 57048360 -102551423 - RLTR19-int LTR ERVK -3905 1617 1566 5 1020 3317 43 5 0 chr3 57048360 57048754 -102551029 + MTA_Mm LTR MaLR 1 396 0 5 1020 260 180 105 63 chr3 57048836 57048931 -102550852 - RLTR19-int LTR ERVK -5160 977 879 5 1020 352 255 42 84 chr3 57049170 57049384 -102550399 - RMER10A LTR ERVL -116 326 122 5 1020 468 0 0 0 chr3 57049885 57049937 -102549846 + (TG)n Simple_repeat Simple_repeat 1 52 0 5 1020 480 264 8 23 chr3 57050133 57050265 -102549518 - ORR1D-int LTR MaLR -1236 134 5 5 1020 1723 236 3 45 chr3 57050470 57050851 -102548932 + ORR1D1 LTR MaLR 1 365 -9 5 1020 5253 215 41 58 chr3 57050853 57052088 -102547695 + ORR1D1-int LTR MaLR 156 1370 0 5 1020 1543 216 24 7 chr3 57052092 57052386 -102547397 + ORR1D1 LTR MaLR 6 304 -70 5 1020 289 274 125 97 chr3 57052479 57052798 -102546985 - L2 LINE L2 -2186 1233 906 6 1020 783 301 69 72 chr3 57052805 57053181 -102546602 + MLT1B LTR MaLR 1 375 -15 6 1020 260 328 57 94 chr3 57054194 57054406 -102545377 - L2 LINE L2 -2517 902 699 6 1020 810 195 318 44 chr3 57054888 57055106 -102544677 + ORR1B1 LTR MaLR 6 283 -84 6 1020 3128 73 2 0 chr3 57055106 57055501 -102544282 - MTA_Mm LTR MaLR 0 396 1 6 1020 577 192 31 55 chr3 57055501 57055586 -102544197 + ORR1B1 LTR MaLR 284 367 0 6 1020 26 50 0 0 chr3 57056106 57056146 -102543637 + AT_rich Low_complexity Low_complexity 1 40 0 6 1020 709 278 5 37 chr3 57056148 57056335 -102543448 + B3A SINE B2 3 183 -15 6 1020 1635 178 7 7 chr3 57057510 57057793 -102541990 - ORR1B1-int LTR MaLR -1226 283 1 6 1020 2038 161 76 8 chr3 57057793 57058162 -102541621 - ORR1B1 LTR MaLR 0 394 1 6 1020 859 306 47 10 chr3 57058173 57058582 -102541201 - L1M2 LINE L1 -3134 3009 2586 6 1020 511 136 0 4 chr3 57058595 57058686 -102541097 + MT2B LTR ERVL 4 92 -441 6 1020 503 220 71 40 chr3 57058727 57058892 -102540891 + MT2B LTR ERVL 94 325 -168 6 1020 1708 50 8 70 chr3 57058896 57059153 -102540630 + RLTR10 LTR ERVK 148 388 -2 6 1020 6076 80 99 50 chr3 57059155 57060100 -102539683 + RLTR10-int LTR ERVK 1 992 -995 6 1020 593 310 30 27 chr3 57060156 57060548 -102539235 + RLTR10-int LTR ERVK 1309 1594 -5987 6 1020 8449 30 18 2 chr3 57060630 57060988 -102538795 + RLTR10-int LTR ERVK 990 1346 -641 7 1020 365 0 22 0 chr3 57060988 57061033 -102538750 + (TG)n Simple_repeat Simple_repeat 2 47 0 7 1020 8449 30 18 2 chr3 57061033 57061655 -102538128 + RLTR10-int LTR ERVK 1347 1984 -3 7 1020 3085 49 2 98 chr3 57061655 57062084 -102537699 + RLTR10 LTR ERVK 1 388 -2 7 1020 937 198 7 79 chr3 57062087 57062333 -102537450 + MT2B LTR ERVL 252 601 0 6 1020 664 196 66 78 chr3 57062531 57062685 -102537098 + B3 SINE B2 46 203 -13 7 1020 715 314 59 21 chr3 57063309 57063407 -102536376 - Lx8 LINE L1 -7 7466 7360 7 1020 312 52 51 17 chr3 57063407 57063466 -102536317 + (TAGA)n Simple_repeat Simple_repeat 2 62 0 7 1020 715 314 59 21 chr3 57063466 57063705 -102536078 - Lx8 LINE L1 -114 7359 7116 7 1020 474 120 0 0 chr3 57063789 57063864 -102535919 + (TA)n Simple_repeat Simple_repeat 2 76 0 7 1020 189 281 250 35 chr3 57063882 57064026 -102535757 - MIRb SINE MIR -42 226 52 7 1020 18269 154 157 8 chr3 57064032 57068471 -102531312 + Lx3A LINE L1 52 5262 -615 7 1020 189 0 0 0 chr3 57068471 57068492 -102531291 + (TAA)n Simple_repeat Simple_repeat 2 22 0 7 1020 18269 120 40 21 chr3 57068492 57070214 -102529569 + Lx3A LINE L1 5263 6981 0 7 1020 24 32 0 0 chr3 57070605 57070636 -102529147 + AT_rich Low_complexity Low_complexity 1 31 0 7 1020 892 228 39 29 chr3 57070680 57070714 -102529069 + B3 SINE B2 1 31 -185 8 1020 1399 145 14 5 chr3 57070714 57070936 -102528847 + Lx LINE L1 6431 6654 0 8 1020 892 228 39 29 chr3 57070936 57071109 -102528674 + B3 SINE B2 32 210 -6 8 1020 184 100 50 0 chr3 57071115 57071155 -102528628 + (TAGA)n Simple_repeat Simple_repeat 4 45 0 8 1020 260 242 121 0 chr3 57071621 57071687 -102528096 - MamGypLTR3 LTR Gypsy -211 628 555 8 1020 501 306 35 17 chr3 57072258 57072431 -102527352 - MLT1A0 LTR MaLR -2 363 188 8 1020 240 295 51 61 chr3 57072779 57072949 -102526834 - MIRb SINE MIR -80 188 19 8 1020 237 405 8 0 chr3 57073387 57073518 -102526265 + MER117 DNA MER1_type 24 155 -42 8 1020 3265 60 10 2 chr3 57073665 57074065 -102525718 + L1_Mus2 LINE L1 6164 6566 0 8 1020 282 160 0 0 chr3 57074286 57074336 -102525447 + T-rich Low_complexity Low_complexity 1 50 0 8 1020 198 0 0 0 chr3 57074345 57074367 -102525416 + (TTG)n Simple_repeat Simple_repeat 2 23 0 8 1020 564 56 0 0 chr3 57074367 57074439 -102525344 - B1_Mus2 SINE Alu -8 139 68 9 1020 952 66 0 0 chr3 57074438 57074559 -102525224 + B1_Mus1 SINE Alu 28 148 0 9 1020 377 259 108 8 chr3 57074723 57074879 -102524904 + L1M2 LINE L1 2840 3011 -3135 9 1020 243 217 137 56 chr3 57075273 57075434 -102524349 - RLTR12A LTR ERVK -20 548 375 9 1020 1306 93 49 40 chr3 57076359 57076564 -102523219 - L1_Mur2 LINE L1 -1912 3965 3758 9 1020 3073 48 75 0 chr3 57076564 57076922 -102522861 - IAPEY_LTR LTR ERVK 0 385 1 9 1020 1306 93 49 40 chr3 57076922 57076940 -102522843 - L1_Mur2 LINE L1 -2120 3757 3740 9 1020 4561 104 92 0 chr3 57076944 57077585 -102522198 + Lx4A LINE L1 6353 7052 -6 9 1020 186 43 0 0 chr3 57077585 57077608 -102522175 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 9 1020 1055 276 35 67 chr3 57077702 57078190 -102521593 + Lx8 LINE L1 5423 5925 -1548 9 1020 1396 184 129 15 chr3 57078375 57078707 -102521076 + ORR1D1 LTR MaLR 1 370 -4 9 1020 22 0 0 0 chr3 57078778 57078800 -102520983 + AT_rich Low_complexity Low_complexity 1 22 0 1 1020 372 237 349 30 chr3 57078847 57079048 -102520735 + L1M2 LINE L1 3854 4118 -2028 9 1020 955 226 50 0 chr3 57079209 57079408 -102520375 + B3 SINE B2 4 212 -4 1 1020 29 98 0 0 chr3 57079413 57079505 -102520278 + AT_rich Low_complexity Low_complexity 1 92 0 1 1020 30 0 0 0 chr3 57079561 57079591 -102520192 + AT_rich Low_complexity Low_complexity 1 30 0 1 1020 21 36 0 0 chr3 57079774 57079802 -102519981 + AT_rich Low_complexity Low_complexity 1 28 0 1 1020 687 189 64 24 chr3 57080335 57080460 -102519323 - B3 SINE B2 -86 130 1 1 1020 442 322 59 42 chr3 57080572 57080891 -102518892 - ORR1E LTR MaLR -10 369 28 1 1020 25 65 0 0 chr3 57082553 57082599 -102517184 + AT_rich Low_complexity Low_complexity 1 46 0 1 1020 1812 150 121 15 chr3 57082873 57083204 -102516579 + ORR1B2 LTR MaLR 2 367 0 1 1020 6593 177 124 30 chr3 57083204 57084584 -102515199 + ORR1B2-int LTR MaLR 1 1509 0 1 1020 1752 207 36 22 chr3 57084584 57084945 -102514838 + ORR1B2 LTR MaLR 1 366 -1 1 1020 218 81 0 26 chr3 57085156 57085194 -102514589 + (TTA)n Simple_repeat Simple_repeat 2 38 0 1 1020 10201 104 6 9 chr3 57085194 57086795 -102512988 - Lx4A LINE L1 -14 7044 5447 1 1020 242 81 15 61 chr3 57086806 57086872 -102512911 + T-rich Low_complexity Low_complexity 4 66 0 1 1020 4479 208 17 25 chr3 57086875 57087473 -102512310 - Lx5 LINE L1 -5 7045 6443 1 1020 1353 104 11 16 chr3 57087473 57087658 -102512125 + B2_Mm1t SINE B2 1 184 -9 1 1020 4479 208 17 25 chr3 57087658 57087942 -102511841 - Lx5 LINE L1 -608 6442 6170 1 1020 2843 46 30 1 chr3 57088371 57088744 -102511039 + L1Md_T LINE L1 5979 6363 -219 1 1020 3416 32 0 0 chr3 57088744 57089121 -102510662 + L1Md_T LINE L1 6206 6582 0 1 1020 565 303 41 112 chr3 57089172 57089548 -102510235 + Charlie4a DNA MER1_type 13 348 -160 1 1020 1255 191 28 19 chr3 57089548 57089761 -102510022 - B3 SINE B2 -1 215 1 1 1020 565 303 41 112 chr3 57089761 57089901 -102509882 + Charlie4a DNA MER1_type 349 492 -16 1 1020 409 272 141 42 chr3 57090061 57090253 -102509530 + ORR1E LTR MaLR 39 249 -110 1 1020 200 118 0 29 chr3 57092653 57092688 -102507095 + (TTTTG)n Simple_repeat Simple_repeat 3 36 0 1 1020 251 294 118 0 chr3 57094776 57094861 -102504922 + MIRm SINE MIR 165 259 -17 1 1020 327 49 0 0 chr3 57094972 57095013 -102504770 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 1020 246 32 0 0 chr3 57095015 57095046 -102504737 + (CATA)n Simple_repeat Simple_repeat 2 32 0 1 1020 222 261 0 0 chr3 57095946 57095992 -102503791 + (CACG)n Simple_repeat Simple_repeat 1 46 0 1 1020 534 318 36 16 chr3 57096344 57096536 -102503247 + MIR SINE MIR 10 205 -57 1 1020 1174 69 21 0 chr3 57097572 57097716 -102502067 + B1_Mus1 SINE Alu 2 148 0 1 1020 209 217 0 0 chr3 57100964 57101010 -102498773 + A-rich Low_complexity Low_complexity 1 46 0 1 1020 1755 31 0 0 chr3 57101249 57101440 -102498343 - B2_Mm1t SINE B2 -1 192 2 1 1020 253 305 48 12 chr3 57101589 57101672 -102498111 - B1F1 SINE Alu -62 87 2 1 1020 528 178 14 7 chr3 57102402 57102549 -102497234 + (TA)n Simple_repeat Simple_repeat 2 149 0 1 1020 182 343 87 19 chr3 57102747 57102851 -102496932 + L2a LINE L2 3265 3375 0 1 1020 990 239 19 5 chr3 57102902 57103112 -102496671 - B3 SINE B2 0 216 4 1 1020 252 0 0 0 chr3 57103379 57103407 -102496376 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 1 1020 192 40 0 0 chr3 57103865 57103890 -102495893 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 1 1020 189 250 19 19 chr3 57104243 57104296 -102495487 + L2a LINE L2 3374 3426 0 1 1020 1007 250 37 57 chr3 57104423 57104720 -102495063 - B4A SINE B4 -1 291 1 1 1020 414 0 0 0 chr3 57106372 57106418 -102493365 + (TAAA)n Simple_repeat Simple_repeat 3 48 0 1 1020 302 150 58 81 chr3 57106467 57106514 -102493269 + Lx6 LINE L1 7364 7414 -46 1 1020 518 118 11 0 chr3 57106514 57106607 -102493176 + (TA)n Simple_repeat Simple_repeat 1 94 0 1 1020 302 150 58 81 chr3 57106607 57106646 -102493137 + Lx6 LINE L1 7415 7448 -12 1 1020 879 83 292 0 chr3 57106687 57106831 -102492952 - B2_Mm2 SINE B2 -7 188 3 1 1020 495 0 0 0 chr3 57108329 57108384 -102491399 + (TG)n Simple_repeat Simple_repeat 1 55 0 1 1020 190 0 0 62 chr3 57109114 57109146 -102490637 + (TTG)n Simple_repeat Simple_repeat 2 31 0 1 1020 673 221 21 28 chr3 57109427 57109571 -102490212 + B1_Mur1 SINE Alu 7 149 0 1 1020 298 256 223 80 chr3 57110492 57110671 -102489112 + B4A SINE B4 5 215 -77 1 1020 224 59 0 29 chr3 57110671 57110706 -102489077 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 1 1020 298 256 223 80 chr3 57110706 57110777 -102489006 + B4A SINE B4 216 290 -2 1 1020 584 244 115 38 chr3 57110836 57110860 -102488923 - B3A SINE B2 0 198 174 1 1020 423 68 0 0 chr3 57110860 57110919 -102488864 + (TG)n Simple_repeat Simple_repeat 2 60 0 1 1020 584 244 115 38 chr3 57110919 57111077 -102488706 - B3A SINE B2 -25 173 2 1 1020 217 329 14 0 chr3 57111221 57111294 -102488489 - MIRb SINE MIR -12 256 183 1 1020 450 272 6 174 chr3 57111469 57111574 -102488209 + MT2A LTR ERVL 3 85 -448 1 1020 2454 174 69 7 chr3 57111574 57112021 -102487762 - Lx3C LINE L1 -2 6974 6500 1 1020 462 272 6 174 chr3 57112021 57112093 -102487690 + MT2A LTR ERVL 86 150 -383 1 1020 1148 223 93 64 chr3 57112099 57112263 -102487520 + MT2A LTR ERVL 106 268 -265 1 1020 2156 89 30 60 chr3 57112263 57112596 -102487187 + ORR1A2 LTR MaLR 5 327 0 1 1020 1148 223 93 64 chr3 57112596 57112776 -102487007 + MT2A LTR ERVL 269 460 -73 1 1020 484 240 94 57 chr3 57112871 57113030 -102486753 + MTC-int LTR MaLR 64 228 -1030 1 1020 2111 107 5 81 chr3 57113032 57113585 -102486198 + RLTR13D6 LTR ERVK 1 694 -208 1 1020 467 87 10 42 chr3 57113598 57113694 -102486089 + L1Md_F3 LINE L1 6492 6584 0 1 1020 240 189 0 0 chr3 57113729 57113803 -102485980 + A-rich Low_complexity Low_complexity 1 74 0 1 1020 989 215 9 37 chr3 57113804 57114021 -102485762 + RLTR13D6 LTR ERVK 813 1023 0 1 1020 1959 264 198 22 chr3 57114025 57114803 -102484980 + MTC-int LTR MaLR 225 1139 -119 1 1020 267 218 0 0 chr3 57115097 57115198 -102484585 + (TG)n Simple_repeat Simple_repeat 2 102 0 1 1020 297 352 0 22 chr3 57115406 57115496 -102484287 + RSINE1 SINE B4 78 165 0 1 1020 22 35 0 0 chr3 57115516 57115545 -102484238 + AT_rich Low_complexity Low_complexity 1 29 0 1 1020 553 199 259 28 chr3 57115575 57115787 -102483996 + RMER4B LTR ERVK 1 261 -324 1 1020 377 317 75 33 chr3 57115805 57116017 -102483766 + RMER19C LTR ERVK 335 555 -56 1 1020 21 0 0 0 chr3 57116481 57116502 -102483281 + AT_rich Low_complexity Low_complexity 1 21 0 1 1020 23 0 0 0 chr3 57117290 57117313 -102482470 + AT_rich Low_complexity Low_complexity 1 23 0 1 1020 42 36 0 0 chr3 57117427 57117483 -102482300 + AT_rich Low_complexity Low_complexity 1 56 0 1 1020 215 211 9 80 chr3 57117550 57117663 -102482120 + A-rich Low_complexity Low_complexity 2 106 0 1 1020 245 354 18 0 chr3 57117675 57117788 -102481995 - Lx7 LINE L1 -393 7303 7189 1 1020 7802 194 43 14 chr3 57117851 57120687 -102479096 - Lx7 LINE L1 -161 7535 4321 1 1020 5146 191 52 50 chr3 57120700 57122773 -102477010 - Lx7 LINE L1 -3360 2520 426 1 1020 900 0 0 0 chr3 57122773 57122873 -102476910 + (GGGAA)n Simple_repeat Simple_repeat 2 101 0 1 1020 5146 238 59 14 chr3 57122873 57123735 -102476048 - Lx7 LINE L1 -7055 673 18 1 1020 231 88 0 0 chr3 57124075 57124109 -102475674 + (TC)n Simple_repeat Simple_repeat 1 34 0 1 1020 2199 226 76 10 chr3 57124307 57124883 -102474900 - Lx2B LINE L1 0 7000 6387 1 1020 216 284 53 107 chr3 57124992 57125067 -102474716 + ID4 SINE ID 11 81 -2 1 1020 37449 15 11 16 chr3 57125802 57127451 -102472332 - L1Md_A LINE L1 0 6582 4928 1 1020 228 183 46 77 chr3 57127451 57127516 -102472267 + RMER20A LTR ERVK 186 248 -268 1 1020 37449 15 11 16 chr3 57127516 57131985 -102467798 - L1Md_A LINE L1 0 4927 441 1 1020 200 279 88 12 chr3 57132063 57132143 -102467640 + MER91C DNA Tip100 31 116 -24 1 1020 344 308 90 7 chr3 57132159 57132303 -102467480 + L1MC LINE L1 5320 5475 -2407 1 1020 7603 119 72 11 chr3 57132515 57133925 -102465858 - Lx4B LINE L1 -10 7048 5528 1 1020 13158 122 39 4 chr3 57133921 57136217 -102463566 - Lx4B LINE L1 -702 5175 2799 1 1020 478 254 92 29 chr3 57136253 57136427 -102463356 + Charlie4a DNA MER1_type 120 304 -204 1 1020 2301 36 0 11 chr3 57136511 57136794 -102462989 + L1Md_F2 LINE L1 6302 6581 -1 1 1020 30 0 0 0 chr3 57137074 57137104 -102462679 + AT_rich Low_complexity Low_complexity 1 30 0 1 1020 28 0 0 0 chr3 57137373 57137401 -102462382 + AT_rich Low_complexity Low_complexity 1 28 0 1 1020 266 0 29 0 chr3 57137629 57137663 -102462120 + (TA)n Simple_repeat Simple_repeat 2 36 0 1 1020 1624 289 75 32 chr3 57137663 57137964 -102461819 - Lx9 LINE L1 -242 7402 7064 1 1020 2720 53 24 3 chr3 57137964 57138303 -102461480 - ORR1A1 LTR MaLR 0 346 1 1 1020 1624 289 75 32 chr3 57138303 57138655 -102461128 - Lx9 LINE L1 -581 7063 6721 1 1020 267 247 0 0 chr3 57139299 57139372 -102460411 + (TG)n Simple_repeat Simple_repeat 2 74 0 1 1020 3903 83 31 2 chr3 57140306 57140847 -102458936 - Lx3_Mus LINE L1 0 7009 6453 1 1020 290 259 164 57 chr3 57140892 57141191 -102458592 - Charlie4a DNA MER1_type -75 433 103 1 1020 1235 189 5 0 chr3 57141192 57141398 -102458385 - URR1B DNA MER1_type 0 225 19 1 1020 5668 126 43 12 chr3 57141405 57142345 -102457438 + Lx2 LINE L1 6029 6997 0 1 1020 3182 48 5 8 chr3 57142475 57142872 -102456911 - MTA_Mm LTR MaLR 0 396 1 1 1020 1866 206 14 0 chr3 57143067 57143416 -102456367 + MTC LTR MaLR 5 358 -63 1 1020 5506 184 51 41 chr3 57143436 57143683 -102456100 + MTC-int LTR MaLR 1 228 -1030 1 1020 1213 35 7 0 chr3 57143683 57143828 -102455955 + B1_Mus2 SINE Alu 1 146 -1 1 1020 5506 184 51 41 chr3 57143828 57144826 -102454957 + MTC-int LTR MaLR 229 1258 0 1 1020 1352 197 86 152 chr3 57144826 57145268 -102454515 + MTC LTR MaLR 1 413 -8 1 1020 322 280 102 23 chr3 57146042 57146170 -102453613 + B1_Mus1 SINE Alu 11 148 0 1 1020 1143 71 118 0 chr3 57146358 57146528 -102453255 + B2_Mm2 SINE B2 1 190 -5 1 1021 489 304 7 35 chr3 57148570 57148713 -102451070 - LTR40b LTR ERVL -5 457 319 1 1021 378 0 0 0 chr3 57148825 57148867 -102450916 + (CA)n Simple_repeat Simple_repeat 2 43 0 1 1021 16861 133 16 26 chr3 57149128 57152927 -102446856 - Lx LINE L1 -3 6651 2894 1 1021 21 71 0 0 chr3 57153061 57153103 -102446680 + AT_rich Low_complexity Low_complexity 1 42 0 1 1021 1068 77 28 14 chr3 57153110 57153255 -102446528 + B1_Mus1 SINE Alu 2 148 0 1 1021 321 197 266 32 chr3 57153263 57153421 -102446362 - Lx9 LINE L1 -23 7621 7427 1 1021 544 238 0 16 chr3 57153416 57153544 -102446239 - Lx9 LINE L1 -375 7269 7144 1 1021 3658 39 0 8 chr3 57153718 57154188 -102445595 + L1Md_F3 LINE L1 5121 5586 -297 1 1021 8252 37 0 1 chr3 57154189 57155170 -102444613 + L1Md_F3 LINE L1 5588 6567 -17 1 1021 24 32 0 0 chr3 57155834 57155865 -102443918 + AT_rich Low_complexity Low_complexity 1 31 0 1 1021 378 43 0 0 chr3 57155925 57155972 -102443811 - tRNA-Met_ tRNA tRNA -29 47 1 2 1021 21 0 0 0 chr3 57155996 57156017 -102443766 + AT_rich Low_complexity Low_complexity 1 21 0 2 1021 1127 68 0 0 chr3 57156613 57156760 -102443023 + B1_Mus2 SINE Alu 1 147 0 2 1021 311 65 0 21 chr3 57156769 57156816 -102442967 + (TG)n Simple_repeat Simple_repeat 2 47 0 2 1021 1128 289 113 48 chr3 57156861 57157425 -102442358 + BLACKJACK DNA AcHobo 1467 2067 -877 2 1021 720 231 51 6 chr3 57157426 57157583 -102442200 - B3 SINE B2 -5 211 48 2 1021 291 293 45 68 chr3 57157905 57157986 -102441797 + ORR1D2 LTR MaLR 127 205 -165 2 1021 663 222 8 0 chr3 57157986 57158112 -102441671 + B1_Mur2 SINE Alu 2 128 -21 2 1021 236 229 8 173 chr3 57158001 57158128 -102441655 + MT2B LTR ERVL 181 286 -315 2 1021 300 298 26 9 chr3 57158150 57158265 -102441518 + ORR1D2 LTR MaLR 195 311 -59 2 1021 317 354 30 12 chr3 57158353 57158519 -102441264 + BLACKJACK DNA AcHobo 2776 2944 0 2 1021 1209 180 14 0 chr3 57158745 57158967 -102440816 + URR1A DNA MER1_type 1 225 -1 2 1021 31430 75 1 0 chr3 57159135 57164306 -102435477 + L1Md_F2 LINE L1 478 5586 -297 2 1021 8373 31 2 0 chr3 57164307 57165287 -102434496 + L1Md_F2 LINE L1 5588 6569 -13 2 1021 23 0 0 0 chr3 57166146 57166169 -102433614 + AT_rich Low_complexity Low_complexity 1 23 0 2 1021 22 35 0 0 chr3 57167538 57167567 -102432216 + AT_rich Low_complexity Low_complexity 1 29 0 2 1021 1617 282 90 64 chr3 57167611 57167820 -102431963 - Lx9 LINE L1 -222 7422 7203 2 1021 491 197 214 0 chr3 57167820 57167937 -102431846 + B1_Mur4 SINE Alu 2 143 -7 2 1021 1617 282 90 64 chr3 57167937 57168596 -102431187 - Lx9 LINE L1 -442 7202 6532 2 1021 353 256 0 23 chr3 57168779 57168867 -102430916 + Lx9 LINE L1 6444 6529 -1115 2 1021 2564 76 65 17 chr3 57168942 57169344 -102430439 + BGLII LTR ERVK 1 421 0 2 1021 484 218 152 30 chr3 57169347 57169583 -102430200 - Lx8 LINE L1 -2 7471 7207 2 1021 539 104 38 0 chr3 57169620 57169726 -102430057 + (TA)n Simple_repeat Simple_repeat 1 110 0 2 1021 1146 316 118 38 chr3 57169916 57170553 -102429230 - MER63C DNA AcHobo -242 688 1 2 1021 1103 255 111 27 chr3 57171011 57171345 -102428438 + MTD LTR MaLR 20 381 -38 2 1021 274 221 194 52 chr3 57171362 57171553 -102428230 + L1ME1 LINE L1 5779 5996 -183 2 1021 209 214 0 41 chr3 57171675 57171748 -102428035 + (TA)n Simple_repeat Simple_repeat 2 71 0 2 1021 495 0 0 0 chr3 57172072 57172127 -102427656 + (TG)n Simple_repeat Simple_repeat 1 55 0 2 1021 256 186 0 0 chr3 57172207 57172250 -102427533 + MER5A DNA MER1_type 122 164 -25 2 1021 3839 52 6 4 chr3 57172261 57172740 -102427043 + L1Md_F2 LINE L1 6102 6581 -1 2 1021 1226 61 0 0 chr3 57172750 57172897 -102426886 + B1_Mus1 SINE Alu 2 148 0 2 1021 703 222 83 97 chr3 57172936 57173190 -102426593 + ORR1D1 LTR MaLR 1 276 -118 2 1021 180 176 0 0 chr3 57173194 57173228 -102426555 + CT-rich Low_complexity Low_complexity 2 35 0 2 1021 1111 201 25 0 chr3 57173230 57173434 -102426349 + ORR1D1 LTR MaLR 166 374 0 2 1021 444 293 67 91 chr3 57173478 57173688 -102426095 + MLT1C LTR MaLR 20 224 -243 2 1021 1209 264 63 82 chr3 57173726 57174138 -102425645 + MTE-int LTR MaLR 1149 1552 -28 2 1021 843 268 13 13 chr3 57174138 57174365 -102425418 + Lx8 LINE L1 7118 7344 -129 2 1021 1180 61 0 0 chr3 57174379 57174526 -102425257 + B1_Mus2 SINE Alu 1 147 0 2 1021 387 0 0 0 chr3 57174526 57174569 -102425214 + (A)n Simple_repeat Simple_repeat 1 43 0 2 1021 1138 204 155 24 chr3 57174854 57175190 -102424593 + RLTR25B LTR ERVK 474 853 -175 2 1021 374 241 43 155 chr3 57175544 57175731 -102424052 + RLTR25B LTR ERVK 757 922 -106 2 1021 243 140 0 0 chr3 57175740 57175790 -102423993 + (GA)n Simple_repeat Simple_repeat 2 51 0 2 1021 4314 22 2 0 chr3 57175858 57176350 -102423433 - MT2_Mm LTR ERVL 0 493 1 2 1021 302 0 0 0 chr3 57176350 57176388 -102423395 - MERVL-int LTR ERVL 0 5485 5448 2 1021 399 123 13 40 chr3 57176388 57176464 -102423319 - ORR1A3-int LTR MaLR -1323 640 567 2 1021 38845 16 14 0 chr3 57176464 57181760 -102418023 - MERVL-int LTR ERVL -114 5371 3 2 1021 3463 25 2 0 chr3 57181760 57182155 -102417628 - MTA_Mm LTR MaLR 0 396 1 2 1021 5395 11 3 0 chr3 57182157 57182797 -102416986 - MT-int LTR MaLR -456 642 1 2 1021 4314 22 2 0 chr3 57182799 57183291 -102416492 - MT2_Mm LTR ERVL 0 493 1 2 1021 754 153 8 24 chr3 57183295 57183422 -102416361 + RLTR25B LTR ERVK 979 1103 0 2 1021 325 348 112 40 chr3 57183958 57184236 -102415547 - L1M5 LINE L1 -542 5582 5285 2 1021 25 31 0 0 chr3 57184276 57184308 -102415475 + AT_rich Low_complexity Low_complexity 1 32 0 2 1021 607 223 73 17 chr3 57184376 57184554 -102415229 - B3A SINE B2 -10 188 1 2 1021 3194 101 97 21 chr3 57184827 57185351 -102414432 + LTRIS2 LTR ERV1 1 564 0 2 1021 235 392 39 23 chr3 57185423 57185551 -102414232 + MIRb SINE MIR 115 244 -24 2 1021 205 86 0 28 chr3 57185618 57185654 -102414129 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 2 1021 1092 155 314 10 chr3 57185978 57186107 -102413676 - RLTR25B LTR ERVK 0 1028 850 2 1021 957 81 0 0 chr3 57186107 57186256 -102413527 + (TC)n Simple_repeat Simple_repeat 1 149 0 2 1021 1092 155 314 10 chr3 57186256 57186419 -102413364 - RLTR25B LTR ERVK -179 849 648 2 1021 496 198 0 65 chr3 57186392 57186500 -102413283 - RLTR25B LTR ERVK -1000 103 3 2 1021 298 0 48 0 chr3 57186526 57186568 -102413215 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 2 1021 1010 96 0 0 chr3 57186568 57186703 -102413080 - B1_Mus1 SINE Alu -11 137 3 2 1021 4276 47 2 8 chr3 57186988 57187503 -102412280 + LTRIS3 LTR ERV1 1 512 0 2 1021 4136 169 39 43 chr3 57187711 57188567 -102411216 + Lx3C LINE L1 6123 6974 -2 2 1021 574 213 88 63 chr3 57188833 57189014 -102410769 + MTC LTR MaLR 1 169 -227 2 1021 1041 223 32 32 chr3 57188994 57189240 -102410543 + RMER4A LTR ERVK 6 251 -215 2 1021 23 33 0 0 chr3 57190382 57190412 -102409371 + AT_rich Low_complexity Low_complexity 1 30 0 2 1021 362 275 0 48 chr3 57190656 57190740 -102409043 - RSINE1 SINE B4 -77 88 9 2 1021 23 0 0 0 chr3 57190863 57190886 -102408897 + AT_rich Low_complexity Low_complexity 1 23 0 2 1021 282 125 0 0 chr3 57191503 57191551 -102408232 + (CA)n Simple_repeat Simple_repeat 2 49 0 2 1021 316 77 38 25 chr3 57192192 57192272 -102407511 + (TA)n Simple_repeat Simple_repeat 2 82 0 2 1021 283 331 105 35 chr3 57192629 57192801 -102406982 + MIR SINE MIR 41 224 -38 2 1021 1331 81 27 11 chr3 57193150 57193338 -102406445 + B2_Mm1a SINE B2 2 192 -1 2 1021 369 0 0 0 chr3 57194083 57194124 -102405659 + (TG)n Simple_repeat Simple_repeat 2 42 0 2 1021 1623 253 68 47 chr3 57194310 57194924 -102404859 + L1_Mur3 LINE L1 2211 2845 -3035 2 1021 439 248 108 0 chr3 57194924 57195053 -102404730 + B1_Mur1 SINE Alu 2 144 -5 2 1021 1623 253 68 47 chr3 57195053 57195159 -102404624 + L1_Mur3 LINE L1 2846 2946 -2934 2 1021 820 275 12 0 chr3 57195170 57195341 -102404442 - B3 SINE B2 -7 209 37 2 1021 516 238 18 64 chr3 57195342 57195513 -102404270 + Lx4B LINE L1 6874 7036 -22 2 1021 321 26 0 0 chr3 57195513 57195551 -102404232 + (GGGA)n Simple_repeat Simple_repeat 1 38 0 2 1021 617 96 0 11 chr3 57195551 57195646 -102404137 + (GAAA)n Simple_repeat Simple_repeat 2 95 0 2 1021 2507 287 72 66 chr3 57195646 57195677 -102404106 + L1_Mur3 LINE L1 3650 3679 -2201 2 1021 2936 72 10 36 chr3 57195677 57196095 -102403688 - MTB_Mm LTR MaLR 0 407 1 2 1021 2507 287 72 66 chr3 57196095 57197621 -102402162 + L1_Mur3 LINE L1 3680 5216 -664 2 1021 234 277 41 25 chr3 57197827 57197949 -102401834 + L1MC LINE L1 5407 5530 -803 2 1021 746 249 39 34 chr3 57198581 57198785 -102400998 + MLT1F2 LTR MaLR 355 559 -1 2 1021 248 373 59 35 chr3 57198966 57199107 -102400676 + MIRb SINE MIR 112 255 -7 2 1021 3886 92 7 41 chr3 57199264 57199850 -102399933 + RMER2 LTR ERV1 1 566 -1 2 1021 3190 158 23 25 chr3 57199873 57200433 -102399350 - RLTR20B2 LTR ERVK 0 560 2 2 1021 268 306 138 56 chr3 57200571 57200803 -102398980 - MLT1G1 LTR MaLR -251 328 78 2 1021 876 200 0 7 chr3 57201896 57202047 -102397736 - B1_Mur4 SINE Alu 0 150 1 2 1021 533 321 54 30 chr3 57202062 57202229 -102397554 - B3A SINE B2 0 216 46 2 1021 327 315 24 24 chr3 57202231 57202394 -102397389 - L1MC5 LINE L1 -99 7862 7699 2 1021 615 280 156 20 chr3 57202394 57202696 -102397087 + MER2 DNA MER2_type 2 344 -1 2 1021 327 315 24 24 chr3 57202696 57202737 -102397046 - L1MC5 LINE L1 -263 7698 7659 2 1021 260 401 73 33 chr3 57202950 57203252 -102396531 - MER90 LTR ERV1 -3 572 259 2 1021 1163 282 73 9 chr3 57203232 57203547 -102396236 - MTE2b LTR MaLR -44 335 1 2 1021 1424 246 59 102 chr3 57203638 57203801 -102395982 - MTD LTR MaLR -14 405 237 2 1021 3126 66 0 2 chr3 57203801 57204196 -102395587 + L1_Mus1 LINE L1 6174 6567 0 2 1021 1424 246 59 102 chr3 57204196 57204453 -102395330 - MTD LTR MaLR -183 236 3 2 1021 4758 291 64 12 chr3 57204474 57205811 -102393972 - MTE-int LTR MaLR -82 1498 93 2 1021 7225 86 5 14 chr3 57205838 57206899 -102392884 - L1_Mus3 LINE L1 0 6638 5588 2 1021 1148 298 36 21 chr3 57207015 57207348 -102392435 - MTE2b LTR MaLR -41 338 1 2 1021 375 78 0 0 chr3 57207618 57207669 -102392114 + (TTTC)n Simple_repeat Simple_repeat 2 52 0 2 1021 1240 54 0 0 chr3 57208270 57208417 -102391366 + B1_Mm SINE Alu 1 147 0 2 1021 216 191 0 0 chr3 57208418 57208465 -102391318 + A-rich Low_complexity Low_complexity 1 47 0 2 1021 183 80 0 0 chr3 57209483 57209508 -102390275 + (TTAA)n Simple_repeat Simple_repeat 1 25 0 2 1021 423 0 0 0 chr3 57209633 57209680 -102390103 + (TG)n Simple_repeat Simple_repeat 2 48 0 2 1021 1861 168 0 7 chr3 57209752 57210045 -102389738 - MTC LTR MaLR 0 421 131 2 1021 1648 40 0 0 chr3 57210045 57210247 -102389536 + L1Md_F3 LINE L1 5385 5586 -297 2 1021 8405 34 0 1 chr3 57210247 57211243 -102388540 + L1Md_F3 LINE L1 5587 6581 -3 2 1021 215 31 31 0 chr3 57211248 57211280 -102388503 + (TAAAAA)n Simple_repeat Simple_repeat 4 36 0 2 1021 778 121 81 0 chr3 57211280 57211404 -102388379 - MTC LTR MaLR -287 134 1 2 1021 276 345 74 25 chr3 57211874 57211996 -102387787 + B4 SINE B4 77 204 -88 2 1021 583 217 0 34 chr3 57211894 57212008 -102387775 + B1_Mm SINE Alu 12 122 -25 2 1021 1250 83 0 11 chr3 57212008 57212190 -102387593 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 2 1021 1302 74 0 0 chr3 57212200 57212375 -102387408 + (GGGAA)n Simple_repeat Simple_repeat 4 178 0 2 1021 221 170 0 78 chr3 57212381 57212432 -102387351 + G-rich Low_complexity Low_complexity 2 48 0 3 1021 303 301 31 106 chr3 57212435 57212595 -102387188 + HAL1-3A_ME LINE L1 2292 2439 -419 3 1021 369 0 0 0 chr3 57212597 57212638 -102387145 + (GGAA)n Simple_repeat Simple_repeat 1 41 0 3 1021 287 182 0 35 chr3 57212981 57213038 -102386745 + MLT1H LTR MaLR 495 549 0 3 1021 282 302 47 0 chr3 57215278 57215364 -102384419 + MER5A1 DNA MER1_type 50 139 -27 3 1021 267 263 39 29 chr3 57215365 57215467 -102384316 - ORR1C1 LTR MaLR -2 377 275 3 1021 839 199 54 54 chr3 57215855 57216041 -102383742 - ORR1B2 LTR MaLR -26 341 156 3 1021 695 246 82 42 chr3 57216064 57216297 -102383486 - ORR1C1 LTR MaLR -108 262 30 3 1021 2773 67 0 0 chr3 57216297 57216654 -102383129 - L1Md_T LINE L1 -1 6581 6225 3 1021 695 219 84 0 chr3 57216654 57216682 -102383101 - ORR1C1 LTR MaLR -349 29 2 3 1021 372 301 84 16 chr3 57216964 57217285 -102382498 + L1_Rod LINE L1 490 832 -6340 3 1021 393 291 67 8 chr3 57217286 57217412 -102382371 + B1_Mur4 SINE Alu 2 131 -18 3 1021 402 21 0 0 chr3 57217412 57217459 -102382324 + (CAGA)n Simple_repeat Simple_repeat 2 48 0 3 1021 341 346 50 35 chr3 57217459 57217473 -102382310 + B1F1 SINE Alu 132 144 -5 3 1021 264 59 0 0 chr3 57217756 57217790 -102381993 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 3 1021 281 105 0 0 chr3 57217831 57217869 -102381914 + U1 snRNA snRNA 7 44 -121 3 1021 610 204 18 0 chr3 57217908 57218021 -102381762 + U1 snRNA snRNA 41 155 -10 3 1021 330 260 14 51 chr3 57218083 57218221 -102381562 + L1_Mur3 LINE L1 2488 2620 -3260 3 1021 568 342 25 0 chr3 57218240 57218401 -102381382 + B3 SINE B2 1 165 -51 3 1021 787 119 11 0 chr3 57218408 57218537 -102381246 + L1Md_F2 LINE L1 5481 5616 -573 3 1021 8107 41 3 4 chr3 57218537 57219519 -102380264 + L1Md_F2 LINE L1 5588 6568 -14 3 1021 636 279 52 103 chr3 57219529 57219696 -102380087 + L1_Mur3 LINE L1 2648 2814 -3066 3 1021 254 86 0 0 chr3 57219696 57219731 -102380052 + U2 snRNA snRNA 1 35 -153 3 1021 636 279 52 103 chr3 57219731 57220189 -102379594 + L1_Mur3 LINE L1 2815 3273 -2607 3 1021 542 270 7 42 chr3 57220200 57220343 -102379440 + B3A SINE B2 61 198 0 3 1021 1741 273 125 8 chr3 57220353 57221209 -102378574 + L1_Mur3 LINE L1 3249 4204 -1676 3 1021 506 268 26 37 chr3 57221209 57221477 -102378306 + L1_Mur3 LINE L1 4107 4371 -1509 3 1021 232 234 78 7 chr3 57221488 57221630 -102378153 + RMER17D2 LTR ERVK 238 389 -420 3 1021 235 250 86 8 chr3 57221631 57221748 -102378035 - L1_Mur3 LINE L1 -503 5377 5252 3 1021 1143 281 69 14 chr3 57221742 57222250 -102377533 - L1_Mur3 LINE L1 -931 4949 4414 3 1021 453 259 48 57 chr3 57222248 57222516 -102377267 + L1_Mur3 LINE L1 5165 5462 -418 3 1021 702 184 262 0 chr3 57222516 57222684 -102377099 + B3 SINE B2 2 213 -3 3 1021 252 250 0 0 chr3 57222707 57222759 -102377024 + L1M2 LINE L1 5489 5540 -772 3 1021 514 174 22 0 chr3 57222760 57222852 -102376931 - RMER13A LTR ERVK -613 247 154 3 1021 696 199 96 30 chr3 57222859 57223073 -102376710 - RMER13B LTR ERVK -372 270 5 3 1021 363 279 39 0 chr3 57223075 57223179 -102376604 + Lx8 LINE L1 6401 6508 -965 3 1021 397 287 16 50 chr3 57223556 57223677 -102376106 + PB1D10 SINE Alu 1 117 0 3 1021 1768 106 109 64 chr3 57223699 57224011 -102375772 - ORR1A3 LTR MaLR 0 326 1 3 1021 1998 152 73 0 chr3 57224639 57224994 -102374789 + ORR1C2 LTR MaLR 4 384 0 3 1021 414 0 0 0 chr3 57225676 57225722 -102374061 + (CAAAA)n Simple_repeat Simple_repeat 2 47 0 3 1021 919 150 0 7 chr3 57225729 57225877 -102373906 + B1_Mur3 SINE Alu 2 148 -1 3 1021 1390 290 87 32 chr3 57225881 57226444 -102373339 - Lx8 LINE L1 -153 7320 6727 3 1021 424 254 15 37 chr3 57227548 57227683 -102372100 + B4A SINE B4 8 139 -153 3 1021 486 246 7 66 chr3 57227728 57227880 -102371903 + B4A SINE B4 132 274 -18 3 1021 216 0 0 0 chr3 57227908 57227932 -102371851 + (CA)n Simple_repeat Simple_repeat 1 24 0 3 1021 216 48 0 67 chr3 57228328 57228373 -102371410 + (TTTTG)n Simple_repeat Simple_repeat 2 43 0 3 1021 249 311 45 15 chr3 57231208 57231342 -102368441 + MER113 DNA MER1_type 108 245 -276 3 1021 225 0 0 0 chr3 57232616 57232641 -102367142 + (CA)n Simple_repeat Simple_repeat 2 26 0 3 1021 335 69 35 0 chr3 57233014 57233072 -102366711 + (TCTCTG)n Simple_repeat Simple_repeat 2 61 0 3 1021 2893 115 13 13 chr3 57233702 57234153 -102365630 + Lx4A LINE L1 6606 7056 -2 3 1021 220 302 16 16 chr3 57234284 57234348 -102365435 + ID4_ SINE ID 16 79 -4 3 1021 211 178 226 34 chr3 57235636 57235736 -102364047 - MIRb SINE MIR -106 156 48 3 1021 590 212 8 17 chr3 57236077 57236197 -102363586 + PB1D9 SINE Alu 2 120 0 3 1021 22 56 0 0 chr3 57236198 57236234 -102363549 + AT_rich Low_complexity Low_complexity 1 36 0 3 1021 231 278 22 0 chr3 57236781 57236871 -102362912 + MER33 DNA MER1_type 156 247 -77 3 1021 1175 61 27 22 chr3 57237037 57237221 -102362562 + B2_Mm2 SINE B2 11 195 0 3 1021 475 265 26 0 chr3 57237272 57237389 -102362394 - ID_B1 SINE B4 -7 217 98 3 1021 290 292 52 0 chr3 57238159 57238255 -102361528 - MER3 DNA MER1_type -78 131 31 3 1021 381 224 0 0 chr3 57238545 57238630 -102361153 - MER2 DNA MER2_type -139 206 122 3 1021 486 285 101 53 chr3 57240196 57240385 -102359398 - B3A SINE B2 0 198 1 3 1021 682 225 69 0 chr3 57240400 57240573 -102359210 - B3 SINE B2 0 216 32 3 1021 616 268 25 0 chr3 57240638 57240795 -102358988 - ID_B1 SINE B4 -54 170 10 3 1021 400 248 42 42 chr3 57240821 57240939 -102358844 - PB1D7 SINE Alu 0 120 3 3 1021 263 235 23 34 chr3 57241157 57241245 -102358538 + MIR SINE MIR 64 150 -112 3 1021 914 76 8 0 chr3 57241881 57242013 -102357770 + (TC)n Simple_repeat Simple_repeat 2 134 0 3 1021 411 21 0 0 chr3 57242013 57242060 -102357723 + (TG)n Simple_repeat Simple_repeat 1 48 0 3 1021 22 56 0 0 chr3 57242246 57242282 -102357501 + AT_rich Low_complexity Low_complexity 1 36 0 3 1021 237 159 0 0 chr3 57242425 57242469 -102357314 + (TA)n Simple_repeat Simple_repeat 2 45 0 3 1021 505 256 8 0 chr3 57242980 57243097 -102356686 + RSINE1 SINE B4 9 126 -39 3 1021 294 50 0 0 chr3 57243109 57243149 -102356634 + (CA)n Simple_repeat Simple_repeat 1 40 0 3 1021 227 191 48 0 chr3 57243199 57243241 -102356542 + RSINE1 SINE B4 60 103 -62 3 1021 291 157 20 0 chr3 57243234 57243285 -102356498 - PB1D9 SINE Alu -66 54 3 3 1021 180 0 0 0 chr3 57243352 57243372 -102356411 + (TG)n Simple_repeat Simple_repeat 1 20 0 3 1021 563 0 15 0 chr3 57243402 57243469 -102356314 + (TAGA)n Simple_repeat Simple_repeat 2 69 0 3 1021 915 224 52 0 chr3 57243469 57243661 -102356122 + B3 SINE B2 15 216 0 3 1021 21 0 0 0 chr3 57245457 57245478 -102354305 + AT_rich Low_complexity Low_complexity 1 21 0 3 1021 399 21 0 0 chr3 57245615 57245663 -102354120 + (GA)n Simple_repeat Simple_repeat 1 48 0 3 1021 286 235 5 72 chr3 57245680 57245873 -102353910 + T-rich Low_complexity Low_complexity 1 180 0 3 1021 295 318 55 0 chr3 57245878 57245988 -102353795 - PB1D10 SINE Alu 0 117 2 3 1021 342 0 0 0 chr3 57246614 57246652 -102353131 + (CA)n Simple_repeat Simple_repeat 2 39 0 3 1021 189 0 0 0 chr3 57247025 57247046 -102352737 + (TG)n Simple_repeat Simple_repeat 2 22 0 3 1021 432 0 0 0 chr3 57247230 57247278 -102352505 + (CA)n Simple_repeat Simple_repeat 2 49 0 3 1021 182 191 21 0 chr3 57247287 57247334 -102352449 + CT-rich Low_complexity Low_complexity 3 50 0 3 1021 596 50 12 0 chr3 57247346 57247426 -102352357 + (TC)n Simple_repeat Simple_repeat 1 81 0 3 1021 180 0 0 0 chr3 57247455 57247475 -102352308 + (TG)n Simple_repeat Simple_repeat 2 21 0 3 1021 1673 209 69 0 chr3 57247571 57247921 -102351862 - ORR1D1 LTR MaLR 0 374 1 3 1021 252 86 0 0 chr3 57247937 57247972 -102351811 + (CATA)n Simple_repeat Simple_repeat 2 36 0 3 1021 238 247 12 47 chr3 57248784 57248869 -102350914 + GA-rich Low_complexity Low_complexity 1 82 0 3 1021 330 87 0 0 chr3 57249738 57249784 -102349999 + (TCCC)n Simple_repeat Simple_repeat 4 49 0 3 1021 375 328 91 109 chr3 57250096 57250248 -102349535 - MLT2F LTR ERVL -59 604 458 3 1021 938 31 146 15 chr3 57250248 57250378 -102349405 + B1_Mm SINE Alu 1 147 0 3 1021 375 328 91 109 chr3 57250378 57250394 -102349389 - MLT2F LTR ERVL -206 457 446 3 1021 592 82 573 16 chr3 57250394 57250518 -102349265 + B2_Mm1a SINE B2 1 193 0 3 1021 375 328 91 109 chr3 57250518 57250799 -102348984 - MLT2F LTR ERVL -218 445 162 3 1021 568 244 71 0 chr3 57250997 57251124 -102348659 - RSINE1 SINE B4 -28 137 2 3 1021 372 343 120 39 chr3 57251244 57251502 -102348281 - MTE-int LTR MaLR -425 1155 877 3 1021 228 240 0 0 chr3 57251729 57251779 -102348004 + B2_Mm2 SINE B2 1 50 -145 3 1021 585 196 0 0 chr3 57251782 57251884 -102347899 + B3 SINE B2 105 206 -10 3 1021 252 0 0 0 chr3 57252750 57252778 -102347005 + (A)n Simple_repeat Simple_repeat 1 28 0 3 1021 1812 117 107 9 chr3 57253169 57253496 -102346287 - ORR1B2 LTR MaLR -8 359 1 3 1021 1597 189 30 100 chr3 57253883 57254282 -102345501 + ORR1D1 LTR MaLR 1 371 -3 3 1021 1232 54 0 0 chr3 57254282 57254430 -102345353 + B1_Mus1 SINE Alu 1 148 0 3 1021 450 289 64 64 chr3 57254457 57254708 -102345075 + B4 SINE B4 24 274 -18 3 1021 246 105 0 0 chr3 57254716 57254754 -102345029 + (CA)n Simple_repeat Simple_repeat 1 38 0 3 1021 471 100 0 0 chr3 57255128 57255198 -102344585 + (CA)n Simple_repeat Simple_repeat 2 71 0 3 1021 349 272 152 0 chr3 57255254 57255379 -102344404 + MER2 DNA MER2_type 108 251 -94 3 1021 956 201 38 11 chr3 57255380 57255604 -102344179 + RLTR20A2 LTR ERVK 1 243 -320 3 1021 510 213 296 38 chr3 57255861 57256098 -102343685 + ORR1D2 LTR MaLR 73 370 0 3 1021 1519 77 129 0 chr3 57256345 57256593 -102343190 + L1_Mus3 LINE L1 6359 6638 0 3 1021 191 286 57 0 chr3 57257032 57257102 -102342681 + MIRb SINE MIR 186 259 -9 3 1021 252 0 0 0 chr3 57257123 57257151 -102342632 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 3 1021 211 327 0 0 chr3 57257369 57257424 -102342359 + BC1_Mm scRNA scRNA 16 70 -82 3 1021 775 133 28 7 chr3 57257741 57257885 -102341898 - Lx2 LINE L1 -1 6996 6850 4 1021 5352 31 26 0 chr3 57257892 57258533 -102341250 - L1Md_F2 LINE L1 0 6582 5925 4 1021 5408 31 11 1 chr3 57258545 57259317 -102340466 + L1Md_F2 LINE L1 5221 5986 -596 4 1021 24 0 0 0 chr3 57259584 57259608 -102340175 + AT_rich Low_complexity Low_complexity 1 24 0 4 1021 22 0 0 0 chr3 57260754 57260776 -102339007 + AT_rich Low_complexity Low_complexity 1 22 0 4 1021 414 0 0 0 chr3 57262006 57262052 -102337731 + (TA)n Simple_repeat Simple_repeat 1 46 0 4 1021 23 0 0 0 chr3 57263079 57263102 -102336681 + AT_rich Low_complexity Low_complexity 1 23 0 4 1021 854 197 13 13 chr3 57263102 57263251 -102336532 - B1_Mur2 SINE Alu 0 149 1 4 1021 812 255 44 24 chr3 57263254 57263459 -102336324 - B3 SINE B2 -5 211 3 4 1021 783 200 34 73 chr3 57263668 57263873 -102335910 + B3 SINE B2 1 197 -1 4 1021 1069 104 46 0 chr3 57264138 57264311 -102335472 + B2_Mm1t SINE B2 4 184 -9 4 1021 752 256 6 0 chr3 57265358 57265530 -102334253 - B3 SINE B2 -14 202 30 4 1021 738 179 7 60 chr3 57265653 57265802 -102333981 + B1_Mur2 SINE Alu 1 141 -8 4 1021 266 164 18 0 chr3 57265808 57265863 -102333920 + GA-rich Low_complexity Low_complexity 2 57 0 4 1021 270 301 0 14 chr3 57266885 57266959 -102332824 + ID_B1 SINE B4 74 146 -78 4 1021 591 260 6 49 chr3 57268057 57268219 -102331564 + RSINE1 SINE B4 11 165 0 4 1021 2420 182 10 28 chr3 57268649 57269158 -102330625 + RLTR16 LTR ERVK 6 505 0 4 1021 639 160 0 0 chr3 57269443 57269549 -102330234 + B2_Mm2 SINE B2 2 107 -88 4 1021 453 145 0 0 chr3 57269856 57269932 -102329851 + (TCCC)n Simple_repeat Simple_repeat 2 77 0 4 1021 316 276 0 13 chr3 57269962 57270039 -102329744 + RSINE1 SINE B4 89 164 -1 4 1021 201 366 51 22 chr3 57270936 57271073 -102328710 + L2a LINE L2 3286 3426 0 4 1021 221 262 0 62 chr3 57271515 57271580 -102328203 + ID4 SINE ID 21 81 -2 4 1021 802 204 136 44 chr3 57271848 57272093 -102327690 + MTD LTR MaLR 13 281 -138 4 1021 207 0 0 0 chr3 57272093 57272116 -102327667 + (CCCTG)n Simple_repeat Simple_repeat 2 24 0 4 1021 802 168 74 16 chr3 57272116 57272220 -102327563 + MTD LTR MaLR 282 421 0 4 1021 551 187 407 23 chr3 57272485 57272784 -102326999 + MTD LTR MaLR 1 414 -5 4 1021 312 250 0 0 chr3 57272940 57273008 -102326775 + BGLII_B LTR ERVK 347 414 -27 4 1021 38 32 0 16 chr3 57273585 57273631 -102326152 + AT_rich Low_complexity Low_complexity 1 46 0 4 1021 1442 67 17 0 chr3 57273631 57273811 -102325972 + B2_Mm2 SINE B2 4 186 -9 4 1021 38 32 0 16 chr3 57273811 57273827 -102325956 + AT_rich Low_complexity Low_complexity 1 16 0 4 1021 594 244 68 91 chr3 57273831 57274052 -102325731 - B3 SINE B2 0 216 1 4 1021 343 324 9 0 chr3 57274244 57274352 -102325431 - MIR SINE MIR -123 139 31 4 1021 340 262 76 53 chr3 57274384 57274588 -102325195 + MIRb SINE MIR 20 224 -44 4 1021 357 268 92 59 chr3 57275933 57276052 -102323731 - B1_Mur1 SINE Alu -16 133 11 4 1021 262 258 32 0 chr3 57276837 57276899 -102322884 - ID4 SINE ID -14 69 6 4 1021 540 342 26 0 chr3 57276965 57277117 -102322666 - RSINE1 SINE B4 -8 157 2 4 1021 1153 135 0 0 chr3 57277117 57277289 -102322494 - B2_Mm2 SINE B2 -23 172 1 4 1021 392 231 92 50 chr3 57277299 57277440 -102322343 - B1F1 SINE Alu 0 149 3 4 127 337 312 75 14 chr3 57278395 57278541 -102321242 + RSINE1 SINE B4 2 156 -9 4 1022 655 284 66 0 chr3 57278563 57278760 -102321023 + B3 SINE B2 2 211 -5 4 1022 290 171 0 14 chr3 57279005 57279076 -102320707 + (CA)n Simple_repeat Simple_repeat 1 70 0 4 1022 243 0 0 0 chr3 57279399 57279426 -102320357 + (CA)n Simple_repeat Simple_repeat 2 28 0 4 1022 217 321 0 0 chr3 57279996 57280049 -102319734 - ID4_ SINE ID -28 55 3 4 1022 885 171 20 0 chr3 57280296 57280442 -102319341 - B1_Mur2 SINE Alu 0 149 1 4 1022 360 311 51 64 chr3 57280789 57281023 -102318760 + MLT1H LTR MaLR 314 544 -5 4 1022 240 35 0 0 chr3 57281757 57281786 -102317997 + (TG)n Simple_repeat Simple_repeat 2 30 0 4 1022 389 303 58 26 chr3 57281794 57281950 -102317833 - RSINE1 SINE B4 -1 164 4 4 1022 194 0 39 0 chr3 57282180 57282206 -102317577 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 4 1022 848 239 28 9 chr3 57282261 57282472 -102317311 + ID_B1 SINE B4 2 216 -8 4 1022 665 182 0 0 chr3 57282495 57282621 -102317162 + B1_Mus1 SINE Alu 2 127 -21 4 1022 213 39 0 0 chr3 57282623 57282649 -102317134 + (TAAAA)n Simple_repeat Simple_repeat 3 28 0 4 1022 612 263 79 34 chr3 57282653 57282830 -102316953 + B3 SINE B2 2 186 -30 4 1022 450 0 0 0 chr3 57282847 57282897 -102316886 + (CA)n Simple_repeat Simple_repeat 1 50 0 4 1022 265 262 47 23 chr3 57283578 57283664 -102316119 - B3A SINE B2 -109 89 2 4 1022 327 49 0 0 chr3 57284209 57284250 -102315533 + (TTCA)n Simple_repeat Simple_repeat 1 41 0 4 1022 469 230 10 0 chr3 57284289 57284389 -102315394 - B3 SINE B2 -88 128 28 4 1022 1010 216 38 5 chr3 57284772 57284981 -102314802 + B3 SINE B2 1 216 0 4 1022 816 278 31 102 chr3 57286901 57287095 -102312688 + L1MC3 LINE L1 7197 7373 -412 4 1022 342 0 0 0 chr3 57287095 57287133 -102312650 + (TG)n Simple_repeat Simple_repeat 1 38 0 4 1022 816 278 31 102 chr3 57287133 57287387 -102312396 + L1MC3 LINE L1 7374 7613 -172 4 1022 459 200 54 18 chr3 57287415 57287527 -102312256 - B1_Mur2 SINE Alu 0 149 34 4 1022 462 254 70 7 chr3 57287548 57287691 -102312092 + L1MC3 LINE L1 7595 7746 -39 4 1022 192 40 0 0 chr3 57287898 57287923 -102311860 + (TTTTC)n Simple_repeat Simple_repeat 2 26 0 4 1022 1016 51 7 42 chr3 57287945 57288088 -102311695 - B1_Mus2 SINE Alu -9 138 1 4 1022 3960 65 0 0 chr3 57288113 57288603 -102311180 - L1Md_T LINE L1 0 6582 6093 4 1022 5201 10 0 0 chr3 57288603 57289186 -102310597 + L1_Mm LINE L1 4959 5541 -342 4 1022 297 0 0 0 chr3 57289429 57289462 -102310321 + (CA)n Simple_repeat Simple_repeat 2 34 0 4 1022 443 75 0 29 chr3 57289726 57289795 -102309988 + (GAAA)n Simple_repeat Simple_repeat 2 68 0 4 1022 281 26 0 26 chr3 57289802 57289841 -102309942 + (GGGA)n Simple_repeat Simple_repeat 1 38 0 4 1022 387 254 12 6 chr3 57289854 57289950 -102309833 + PB1D9 SINE Alu 2 95 -22 4 1022 294 226 0 31 chr3 57290267 57290331 -102309452 - MER81 DNA AcHobo -5 109 48 4 1022 362 21 21 0 chr3 57292334 57292381 -102307402 + (TG)n Simple_repeat Simple_repeat 2 49 0 4 1022 815 286 116 60 chr3 57293251 57293667 -102306116 + Lx8 LINE L1 7016 7466 -7 4 1022 1761 146 74 20 chr3 57294659 57295009 -102304774 + ORR1C2 LTR MaLR 3 371 -13 4 1022 362 253 111 107 chr3 57295634 57295831 -102303952 + L1MC4 LINE L1 7357 7565 -477 4 1022 1015 62 20 59 chr3 57295831 57295984 -102303799 + B1_Mus2 SINE Alu 1 147 0 4 1022 362 253 111 107 chr3 57295984 57296056 -102303727 + L1MC4 LINE L1 7566 7627 -415 4 1022 361 250 12 0 chr3 57296058 57296138 -102303645 + ID4 SINE ID 3 83 0 4 1022 255 285 29 102 chr3 57296350 57296487 -102303296 + ID_B1 SINE B4 2 128 -96 4 1022 186 43 0 0 chr3 57296527 57296550 -102303233 + (TGGA)n Simple_repeat Simple_repeat 1 23 0 4 1022 375 23 0 0 chr3 57296552 57296596 -102303187 + (GGAA)n Simple_repeat Simple_repeat 1 44 0 4 1022 261 222 16 0 chr3 57296690 57296753 -102303030 + L1MC4 LINE L1 7977 8040 -2 4 1022 180 0 0 0 chr3 57297006 57297026 -102302757 + (TG)n Simple_repeat Simple_repeat 2 21 0 4 1022 22 35 0 0 chr3 57297453 57297482 -102302301 + AT_rich Low_complexity Low_complexity 1 29 0 4 1022 627 275 25 15 chr3 57298312 57298515 -102301268 + B3 SINE B2 2 206 -10 4 1022 22 35 0 0 chr3 57299291 57299320 -102300463 + AT_rich Low_complexity Low_complexity 1 29 0 4 1022 938 164 106 15 chr3 57299725 57299923 -102299860 + B3 SINE B2 1 216 0 4 1022 556 273 14 0 chr3 57300067 57300206 -102299577 - RSINE1 SINE B4 -10 155 15 4 1022 180 254 31 78 chr3 57300869 57300933 -102298850 - MIRm SINE MIR -179 97 37 4 1022 232 383 65 0 chr3 57301637 57301744 -102298039 + B1F SINE Alu 1 114 -35 4 1022 394 251 98 77 chr3 57301654 57301773 -102298010 + ID_B1 SINE B4 32 222 -2 4 1022 524 175 156 16 chr3 57301773 57301895 -102297888 + B1_Mus1 SINE Alu 10 148 0 4 1022 237 182 29 29 chr3 57301962 57302030 -102297753 + L1_Rod LINE L1 3789 3856 -1991 4 1022 444 104 0 0 chr3 57302052 57302119 -102297664 + (GGGA)n Simple_repeat Simple_repeat 4 70 0 4 1022 222 116 0 0 chr3 57302115 57302158 -102297625 + (CAGC)n Simple_repeat Simple_repeat 1 43 0 4 1022 251 228 33 66 chr3 57302158 57302219 -102297564 + ID4_ SINE ID 16 74 -9 4 1022 222 37 0 0 chr3 57302221 57302248 -102297535 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 4 1022 496 357 0 0 chr3 57302520 57302660 -102297123 - RSINE1 SINE B4 -11 154 15 4 1022 200 176 0 0 chr3 57302921 57302955 -102296828 + (CA)n Simple_repeat Simple_repeat 1 34 0 4 1022 414 132 0 0 chr3 57303042 57303118 -102296665 + (TG)n Simple_repeat Simple_repeat 2 77 0 4 1022 636 247 119 39 chr3 57303334 57303620 -102296163 + RMER20B LTR ERVK 128 436 -191 4 1022 325 283 237 0 chr3 57303702 57303854 -102295929 - B4 SINE B4 -41 251 64 4 1022 248 286 0 16 chr3 57303960 57304024 -102295759 + tRNA-Ala-GCY_ tRNA tRNA 1 63 -12 4 1022 180 0 0 0 chr3 57304050 57304070 -102295713 + (CA)n Simple_repeat Simple_repeat 1 20 0 4 1022 381 272 39 124 chr3 57305271 57305602 -102294181 + RMER10A LTR ERVL 116 418 -24 4 1022 351 0 0 0 chr3 57306046 57306085 -102293698 + (CA)n Simple_repeat Simple_repeat 1 39 0 4 1022 249 108 0 0 chr3 57306225 57306262 -102293521 + (TGGG)n Simple_repeat Simple_repeat 2 38 0 5 1022 1168 42 28 0 chr3 57306469 57306613 -102293170 + B1_Mus1 SINE Alu 1 148 0 5 1022 194 207 17 0 chr3 57306781 57306839 -102292944 + CT-rich Low_complexity Low_complexity 1 59 0 5 1022 276 30 0 0 chr3 57307171 57307204 -102292579 + (GA)n Simple_repeat Simple_repeat 2 34 0 5 1022 287 327 78 17 chr3 57307484 57307599 -102292184 + B4 SINE B4 3 124 -168 5 1022 384 59 0 0 chr3 57307799 57307850 -102291933 + (TC)n Simple_repeat Simple_repeat 1 51 0 5 1022 537 209 73 0 chr3 57309621 57309731 -102290052 + PB1D9 SINE Alu 1 118 -2 5 1022 183 238 0 0 chr3 57309858 57309900 -102289883 - L4 LINE RTE -283 1746 1705 5 1022 342 0 0 0 chr3 57310549 57310587 -102289196 + (CA)n Simple_repeat Simple_repeat 1 38 0 5 1022 180 0 0 0 chr3 57311612 57311632 -102288151 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 5 1022 1125 68 7 0 chr3 57311783 57311929 -102287854 - B1_Mus1 SINE Alu 0 148 2 5 1022 271 144 212 20 chr3 57311933 57312007 -102287776 + B1_Mur1 SINE Alu 62 147 -2 5 1022 1159 71 124 6 chr3 57312565 57312734 -102287049 + B2_Mm2 SINE B2 1 189 -6 5 1022 1094 63 42 0 chr3 57313487 57313629 -102286154 + B1_Mus1 SINE Alu 1 148 0 5 1022 1506 53 21 5 chr3 57313675 57313865 -102285918 + B2_Mm2 SINE B2 3 195 0 5 1022 222 37 0 0 chr3 57314943 57314970 -102284813 + (CCCCCA)n Simple_repeat Simple_repeat 3 29 0 5 1022 373 298 27 47 chr3 57315027 57315175 -102284608 + MamRep137 DNA TcMar? 65 209 -235 5 1022 214 250 93 23 chr3 57316646 57316732 -102283051 + MIRb SINE MIR 98 189 -79 5 1022 216 0 0 0 chr3 57317222 57317246 -102282537 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 5 1022 288 271 30 5 chr3 57317317 57317447 -102282336 - L1M LINE L1 -835 5465 5335 5 1022 661 247 0 27 chr3 57317460 57317610 -102282173 + B1_Mur3 SINE Alu 1 146 -3 5 1022 1152 57 0 7 chr3 57317771 57317912 -102281871 + B1_Mus1 SINE Alu 3 142 -6 5 1022 224 179 0 0 chr3 57318040 57318079 -102281704 + B1_Mur2 SINE Alu 73 111 -38 5 1022 361 326 73 42 chr3 57318062 57318254 -102281529 + MER21B LTR ERV1 509 706 -157 5 1022 297 264 0 40 chr3 57318283 57318358 -102281425 - ID4 SINE ID -5 78 7 5 1022 21 0 0 0 chr3 57318568 57318589 -102281194 + AT_rich Low_complexity Low_complexity 1 21 0 5 1022 592 265 22 45 chr3 57318856 57319034 -102280749 + B3A SINE B2 1 174 -24 5 1022 657 219 132 11 chr3 57319055 57319244 -102280539 + B3 SINE B2 1 212 -4 5 1022 32 0 0 0 chr3 57319246 57319278 -102280505 + AT_rich Low_complexity Low_complexity 1 32 0 5 1022 22 70 0 0 chr3 57319712 57319755 -102280028 + AT_rich Low_complexity Low_complexity 1 43 0 5 1022 852 215 50 30 chr3 57319757 57319958 -102279825 - B3 SINE B2 -11 205 1 5 1022 216 265 48 12 chr3 57320319 57320403 -102279380 - PB1D10 SINE Alu 0 117 31 5 1022 250 203 17 17 chr3 57320528 57320588 -102279195 + (TGAA)n Simple_repeat Simple_repeat 2 61 0 5 1022 345 313 0 74 chr3 57320603 57320724 -102279059 + ID_B1 SINE B4 59 170 -54 5 1022 375 253 32 0 chr3 57320653 57320748 -102279035 + PB1D10 SINE Alu 19 116 -1 5 1022 527 144 69 43 chr3 57321653 57321769 -102278014 - B1_Mus2 SINE Alu -5 142 24 5 1022 843 174 7 14 chr3 57321901 57322047 -102277736 + B1_Mus1 SINE Alu 4 148 0 5 1022 714 309 34 50 chr3 57322090 57322269 -102277514 + B4A SINE B4 1 172 -120 5 1022 3248 58 2 2 chr3 57322269 57322665 -102277118 + MTA_Mm LTR MaLR 1 396 0 5 1022 714 309 34 50 chr3 57322665 57322782 -102277001 + B4A SINE B4 173 292 0 5 1022 299 279 96 103 chr3 57323517 57323673 -102276110 + B4 SINE B4 65 219 -73 5 1022 479 246 57 43 chr3 57323542 57323682 -102276101 + B1_Mur1 SINE Alu 7 148 -1 5 1022 442 249 10 0 chr3 57324756 57324874 -102274909 - B1F SINE Alu -1 119 1 5 1022 366 23 0 0 chr3 57324977 57325020 -102274763 + (TGGA)n Simple_repeat Simple_repeat 4 46 0 5 1022 295 209 34 0 chr3 57325079 57325145 -102274638 - B1F1 SINE Alu -49 68 1 5 1022 1246 166 85 98 chr3 57325148 57325476 -102274307 + ORR1B2 LTR MaLR 1 324 -43 5 1022 1119 70 35 0 chr3 57325476 57325618 -102274165 + B1_Mus1 SINE Alu 2 148 0 5 1022 494 241 30 69 chr3 57325766 57325925 -102273858 - B3 SINE B2 -4 212 58 5 1022 939 257 101 10 chr3 57327056 57327363 -102272420 + ORR1D1 LTR MaLR 35 369 -5 5 1022 5370 192 56 39 chr3 57327373 57327554 -102272229 + ORR1D1-int LTR MaLR 6 205 -1165 5 1022 2849 30 62 3 chr3 57327554 57327891 -102271892 + IAPEY2_LTR LTR ERVK 1 357 0 5 1022 5370 190 54 36 chr3 57327891 57328994 -102270789 + ORR1D1-int LTR MaLR 206 1370 0 5 1022 934 229 38 11 chr3 57329004 57329263 -102270520 + ORR1D1 LTR MaLR 22 280 -90 5 1022 359 252 77 23 chr3 57329253 57329383 -102270400 - MTD LTR MaLR -278 141 5 5 1022 2597 133 19 44 chr3 57329516 57329948 -102269835 - MTC LTR MaLR 0 421 1 5 1022 1375 151 260 63 chr3 57330367 57330686 -102269097 + ORR1C2 LTR MaLR 1 382 -2 5 1022 1294 281 75 58 chr3 57330832 57331695 -102268088 - Lx8 LINE L1 -1588 6056 5194 5 1022 235 255 0 19 chr3 57331882 57331934 -102267849 + B1_Mus2 SINE Alu 2 52 -95 5 1022 218 146 40 40 chr3 57331918 57331968 -102267815 + B1_Mur2 SINE Alu 100 149 0 5 1022 1182 316 114 65 chr3 57333095 57333599 -102266184 - L1M2 LINE L1 -991 5155 4620 5 1022 312 27 0 0 chr3 57333599 57333636 -102266147 + (TTTC)n Simple_repeat Simple_repeat 4 40 0 5 1022 1182 323 53 34 chr3 57333636 57333897 -102265886 - L1M2 LINE L1 -1524 4619 4304 5 1022 278 269 161 25 chr3 57333921 57334039 -102265744 - B3 SINE B2 -4 212 79 5 1022 472 322 14 0 chr3 57334640 57334786 -102264997 - B1F SINE Alu 0 149 2 5 1022 240 271 42 93 chr3 57336092 57336210 -102263573 - PB1D10 SINE Alu -5 112 1 5 1022 362 363 8 8 chr3 57336210 57336334 -102263449 + MLT1G1 LTR MaLR 214 337 -242 5 1022 2749 217 137 38 chr3 57336602 57337412 -102262371 + RMER19B LTR ERVK 1 890 -12 5 1022 628 136 34 8 chr3 57338079 57338198 -102261585 - B1_Mur1 SINE Alu -4 145 24 5 1022 201 283 180 10 chr3 57339429 57339529 -102260254 - MIRc SINE MIR -109 159 43 5 1022 266 191 222 28 chr3 57341099 57341222 -102258561 + MLT1A LTR MaLR 256 374 0 5 1022 514 250 122 24 chr3 57341299 57341463 -102258320 - B3A SINE B2 -18 180 1 5 1022 183 42 0 0 chr3 57342131 57342155 -102257628 + (ATTTG)n Simple_repeat Simple_repeat 3 26 0 5 1022 1478 109 47 131 chr3 57342411 57342771 -102257012 - RMER10B LTR ERVL -31 367 38 5 1022 704 162 88 7 chr3 57342875 57343012 -102256771 - B1_Mur1 SINE Alu 0 149 2 5 1022 923 257 94 39 chr3 57343067 57343412 -102256371 - MTD LTR MaLR -15 364 3 5 1022 975 205 82 0 chr3 57344063 57344258 -102255525 + B3 SINE B2 1 211 -5 5 1022 236 380 62 8 chr3 57346378 57346508 -102253275 + MER58B DNA MER1_type 187 323 -18 5 1022 248 262 24 59 chr3 57346607 57346692 -102253091 + ID4_ SINE ID 2 83 0 5 1022 234 81 0 0 chr3 57346692 57346729 -102253054 + (A)n Simple_repeat Simple_repeat 1 37 0 5 1022 25 0 0 0 chr3 57347262 57347287 -102252496 + AT_rich Low_complexity Low_complexity 1 25 0 5 1022 222 37 0 0 chr3 57349106 57349133 -102250650 + (A)n Simple_repeat Simple_repeat 1 27 0 5 1022 261 333 61 0 chr3 57349167 57349266 -102250517 + PB1D10 SINE Alu 13 117 0 5 1022 350 342 24 24 chr3 57349533 57349698 -102250085 + RSINE1 SINE B4 1 165 0 5 1022 25 51 0 0 chr3 57349705 57349744 -102250039 + AT_rich Low_complexity Low_complexity 1 39 0 5 1022 193 351 0 17 chr3 57350478 57350536 -102249247 - MIRb SINE MIR -190 78 22 5 1022 252 77 0 0 chr3 57351937 57351976 -102247807 + (CAGA)n Simple_repeat Simple_repeat 4 42 0 5 1022 1072 77 146 12 chr3 57352152 57352323 -102247460 + B2_Mm2 SINE B2 2 195 0 5 1022 25 31 0 0 chr3 57353664 57353696 -102246087 + AT_rich Low_complexity Low_complexity 1 32 0 5 1022 750 236 29 7 chr3 57353837 57354011 -102245772 + B3A SINE B2 1 175 -23 5 1022 297 0 0 0 chr3 57354011 57354044 -102245739 + (CA)n Simple_repeat Simple_repeat 1 33 0 5 1022 748 245 15 55 chr3 57354044 57354068 -102245715 + B3 SINE B2 170 191 -25 5 1022 402 224 147 29 chr3 57355416 57355496 -102244287 + B3A SINE B2 3 102 -96 5 1022 378 0 0 0 chr3 57355496 57355538 -102244245 + (TG)n Simple_repeat Simple_repeat 2 43 0 5 1022 402 224 147 29 chr3 57355538 57355627 -102244156 + B3A SINE B2 103 192 -6 5 1022 777 167 43 0 chr3 57355650 57355788 -102243995 + B1_Mur4 SINE Alu 1 144 -6 5 1022 624 218 14 14 chr3 57356560 57356692 -102243091 + B1_Mur2 SINE Alu 6 139 -10 5 1022 651 90 0 0 chr3 57356692 57356792 -102242991 + (GA)n Simple_repeat Simple_repeat 2 101 0 5 1022 624 218 14 14 chr3 57356792 57356803 -102242980 + B1_Mur2 SINE Alu 140 149 0 5 1022 300 137 0 0 chr3 57357377 57357428 -102242355 + (GGA)n Simple_repeat Simple_repeat 2 52 0 5 1022 221 200 187 121 chr3 57357438 57357529 -102242254 + B1F SINE Alu 48 144 -5 5 1022 328 162 49 24 chr3 57357526 57357608 -102242175 - MER53 DNA hAT -14 179 96 5 1022 279 93 0 0 chr3 57357614 57357657 -102242126 + (TTTTA)n Simple_repeat Simple_repeat 2 44 0 5 1022 1164 62 7 0 chr3 57357660 57357804 -102241979 - B1_Mus1 SINE Alu -2 146 2 5 1022 366 195 12 0 chr3 57357804 57357886 -102241897 + MER53 DNA hAT 106 188 -5 5 1022 440 259 24 57 chr3 57358779 57358902 -102240881 - PB1D7 SINE Alu 0 120 2 5 1022 225 0 0 0 chr3 57358933 57358958 -102240825 + (A)n Simple_repeat Simple_repeat 1 25 0 5 1022 366 23 0 0 chr3 57359200 57359243 -102240540 + (CA)n Simple_repeat Simple_repeat 1 43 0 5 1022 26 0 0 0 chr3 57359245 57359271 -102240512 + AT_rich Low_complexity Low_complexity 1 26 0 5 1022 21 57 0 0 chr3 57360125 57360160 -102239623 + AT_rich Low_complexity Low_complexity 1 35 0 6 1022 1206 41 0 20 chr3 57360225 57360375 -102239408 - B1_Mus1 SINE Alu 0 148 2 6 1022 250 333 36 36 chr3 57360602 57360630 -102239153 + ID_B1 SINE B4 50 186 -38 6 1022 415 200 28 37 chr3 57360630 57360739 -102239044 + B1_Mur1 SINE Alu 1 108 -41 6 1022 283 191 32 0 chr3 57360767 57360830 -102238953 + Lx9 LINE L1 7576 7640 -4 6 1022 627 282 20 21 chr3 57361041 57361245 -102238538 + B3A SINE B2 1 203 -13 6 1022 181 245 41 0 chr3 57361491 57361540 -102238243 - MIRb SINE MIR -187 81 31 6 1022 592 271 91 108 chr3 57361821 57362173 -102237610 + L1MB8 LINE L1 5820 6165 -13 6 1022 1129 49 35 0 chr3 57362196 57362338 -102237445 + B1_Mus2 SINE Alu 1 147 0 6 1022 239 167 134 0 chr3 57363091 57363160 -102236623 + MIR SINE MIR 81 157 -119 6 1022 670 223 31 0 chr3 57363253 57363383 -102236400 + B1F2 SINE Alu 6 139 -10 6 1022 246 62 0 0 chr3 57363389 57363421 -102236362 + (CATA)n Simple_repeat Simple_repeat 3 34 0 6 1022 396 0 0 0 chr3 57364079 57364123 -102235660 + (CCA)n Simple_repeat Simple_repeat 2 45 0 6 1022 986 77 0 7 chr3 57364152 57364295 -102235488 - B1_Mus2 SINE Alu -2 145 4 6 1022 573 214 121 7 chr3 57365035 57365176 -102234607 + B3A SINE B2 4 160 -38 6 1022 348 24 0 0 chr3 57365181 57365222 -102234561 + (CA)n Simple_repeat Simple_repeat 2 42 0 6 1022 9036 14 0 1 chr3 57365471 57366511 -102233272 - L1Md_T LINE L1 0 6582 5595 6 1022 405 213 245 17 chr3 57367928 57368043 -102231740 + B1_Mur4 SINE Alu 1 135 -15 6 1022 261 0 0 0 chr3 57368045 57368074 -102231709 + (GA)n Simple_repeat Simple_repeat 1 29 0 6 1022 316 194 60 75 chr3 57368077 57368144 -102231639 + RSINE1 SINE B4 4 70 -95 6 1022 414 203 66 51 chr3 57368148 57368273 -102231510 + B1_Mur1 SINE Alu 19 127 -20 6 1022 6571 208 81 18 chr3 57368274 57368441 -102231342 + Lx6 LINE L1 5991 6184 -1276 6 1022 2175 131 87 19 chr3 57368441 57368808 -102230975 - ORR1B1 LTR MaLR 0 394 3 6 1022 6571 208 81 18 chr3 57368808 57370023 -102229760 + Lx6 LINE L1 6185 7460 0 6 1022 538 237 99 0 chr3 57370194 57370325 -102229458 + RSINE1 SINE B4 6 149 -16 6 1022 262 196 0 0 chr3 57371404 57371450 -102228333 + ID_B1 SINE B4 81 126 -98 6 1022 370 221 71 31 chr3 57371411 57371509 -102228274 + PB1D9 SINE Alu 7 108 -12 6 1022 333 0 0 0 chr3 57371675 57371712 -102228071 + (TTTA)n Simple_repeat Simple_repeat 2 38 0 6 1022 634 217 58 13 chr3 57371722 57371876 -102227907 - B3 SINE B2 -53 163 3 6 1022 258 190 90 116 chr3 57372324 57372337 -102227446 - B2_Mm2 SINE B2 -1 194 182 6 1022 1157 75 0 0 chr3 57372337 57372483 -102227300 - B1_Mm SINE Alu 0 147 2 6 1022 396 155 42 72 chr3 57372483 57372631 -102227152 - B3 SINE B2 0 216 37 6 1022 400 291 60 77 chr3 57373346 57373644 -102226139 + Lx8 LINE L1 7180 7472 -1 6 1022 416 280 19 0 chr3 57373734 57373841 -102225942 + PB1D7 SINE Alu 7 115 -5 6 1022 333 234 100 19 chr3 57374006 57374110 -102225673 + PB1D9 SINE Alu 24 130 -19 6 1022 700 240 15 32 chr3 57374219 57374423 -102225360 + B3A SINE B2 22 215 -1 6 1022 580 254 0 36 chr3 57374426 57374565 -102225218 + B1_Mur3 SINE Alu 3 136 -13 6 1022 334 287 80 53 chr3 57374714 57374865 -102224918 + ID_B1 SINE B4 4 158 -66 6 1022 246 290 0 88 chr3 57374786 57374888 -102224895 + B1F2 SINE Alu 6 98 -51 6 1022 198 0 0 0 chr3 57374907 57374929 -102224854 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 6 1022 471 209 81 9 chr3 57375218 57375329 -102224454 + PB1D9 SINE Alu 1 119 -1 6 1022 217 265 73 0 chr3 57375541 57375609 -102224174 + B3A SINE B2 2 74 -124 6 1022 455 159 91 0 chr3 57375824 57375912 -102223871 + PB1D9 SINE Alu 20 115 -5 6 1022 424 176 11 21 chr3 57376203 57376296 -102223487 + B1_Mus2 SINE Alu 56 147 0 6 1022 679 194 71 95 chr3 57377364 57377575 -102222208 + B3 SINE B2 1 206 -10 6 1022 240 111 0 0 chr3 57378594 57378639 -102221144 + (TC)n Simple_repeat Simple_repeat 2 46 0 6 1022 353 58 19 0 chr3 57378641 57378693 -102221090 + (CA)n Simple_repeat Simple_repeat 1 53 0 6 1022 21 0 0 0 chr3 57379912 57379933 -102219850 + GC_rich Low_complexity Low_complexity 1 21 0 6 1022 375 269 0 0 chr3 57381080 57381173 -102218610 + RSINE1 SINE B4 15 107 -58 6 1022 1985 209 124 140 chr3 57381313 57381653 -102218130 - RCHARR1 DNA MER1_type -1 973 725 6 1022 1107 88 0 0 chr3 57381653 57381800 -102217983 - B1_Mus2 SINE Alu 0 147 1 6 1022 1985 209 124 140 chr3 57381800 57382351 -102217432 - RCHARR1 DNA MER1_type -250 724 96 6 1022 330 125 54 27 chr3 57382367 57382441 -102217342 - PB1D9 SINE Alu -5 115 40 6 1022 324 219 11 58 chr3 57382435 57382522 -102217261 - RCHARR1 DNA MER1_type -886 88 6 6 1022 395 236 95 52 chr3 57382983 57383099 -102216684 + PB1 SINE Alu 4 124 -3 6 1022 609 257 290 16 chr3 57383215 57383470 -102216313 + MTD LTR MaLR 92 416 -3 6 1022 641 234 21 21 chr3 57383493 57383637 -102216146 + B1_Mur2 SINE Alu 6 149 0 6 1022 826 255 71 9 chr3 57383771 57383981 -102215802 + Lx8 LINE L1 7119 7341 -132 6 1022 1131 99 0 0 chr3 57383986 57384147 -102215636 + B2_Mm2 SINE B2 1 161 -34 6 1022 369 0 0 0 chr3 57384147 57384188 -102215595 + (TAAA)n Simple_repeat Simple_repeat 1 41 0 6 1022 242 266 25 0 chr3 57384216 57384295 -102215488 + Lx8 LINE L1 7393 7473 0 6 1022 409 316 51 6 chr3 57384345 57384501 -102215282 + ID_B1 SINE B4 61 223 -1 6 1022 296 282 45 0 chr3 57384508 57384618 -102215165 + PB1D7 SINE Alu 4 118 -2 6 1022 2609 266 35 82 chr3 57384807 57385011 -102214772 - Lx6 LINE L1 -19 7441 7259 6 1022 915 141 7 0 chr3 57385011 57385153 -102214630 + B1_Mus2 SINE Alu 5 147 0 6 1022 2609 266 35 82 chr3 57385153 57385577 -102214206 - Lx6 LINE L1 -202 7258 6862 6 1022 646 97 287 9 chr3 57385577 57385692 -102214091 - B1_Mus2 SINE Alu 0 147 1 6 1022 2609 244 75 32 chr3 57385692 57386295 -102213488 - Lx6 LINE L1 -599 6861 5999 6 1022 231 406 21 0 chr3 57386461 57386486 -102213297 + B1F1 SINE Alu 1 110 -39 6 1022 279 330 0 27 chr3 57386486 57386598 -102213185 + ID_B1 SINE B4 107 215 -9 6 1022 945 213 68 19 chr3 57386608 57386814 -102212969 + B3 SINE B2 1 216 0 6 1022 230 283 0 0 chr3 57386822 57386875 -102212908 + G-rich Low_complexity Low_complexity 4 56 0 6 1022 1207 54 0 0 chr3 57387060 57387207 -102212576 + B1_Mus2 SINE Alu 1 147 0 6 1022 216 0 0 0 chr3 57387207 57387231 -102212552 + (A)n Simple_repeat Simple_repeat 1 24 0 6 1022 832 171 50 6 chr3 57388167 57388326 -102211457 - B3 SINE B2 -23 193 28 6 1022 252 0 0 0 chr3 57389388 57389416 -102210367 + (TA)n Simple_repeat Simple_repeat 2 29 0 6 1022 201 74 0 0 chr3 57390370 57390397 -102209386 + (CA)n Simple_repeat Simple_repeat 1 27 0 6 1022 40 21 0 0 chr3 57390414 57390461 -102209322 + AT_rich Low_complexity Low_complexity 1 47 0 6 1022 1067 36 0 0 chr3 57390838 57390976 -102208807 - B1_Mm SINE Alu 0 147 10 6 1022 417 189 26 86 chr3 57390883 57390999 -102208784 - MT2B LTR ERVL -344 257 149 6 1022 1343 88 28 0 chr3 57391239 57391420 -102208363 - B2_Mm2 SINE B2 -7 188 3 6 1022 365 133 313 17 chr3 57391485 57391600 -102208183 - B2_Mm2 SINE B2 0 195 47 6 1022 1067 119 12 6 chr3 57391651 57391820 -102207963 - B2_Mm1t SINE B2 -22 171 2 6 1022 21 0 0 0 chr3 57391834 57391855 -102207928 + AT_rich Low_complexity Low_complexity 1 21 0 6 1022 716 199 80 7 chr3 57391855 57391992 -102207791 + B1_Mur2 SINE Alu 2 148 -1 6 1022 3823 177 13 56 chr3 57392456 57393313 -102206470 + RMER13B LTR ERVK 2 821 -87 6 1022 339 319 67 8 chr3 57393413 57393533 -102206250 + PB1 SINE Alu 1 127 0 6 1022 959 273 116 8 chr3 57394214 57394528 -102205255 + MTEa LTR MaLR 18 341 -18 6 1022 291 203 0 0 chr3 57394783 57394847 -102204936 + GA-rich Low_complexity Low_complexity 3 66 0 6 1022 376 164 0 15 chr3 57394882 57394950 -102204833 + ORR1E LTR MaLR 282 348 -11 6 1022 2062 167 68 0 chr3 57394964 57395318 -102204465 + ORR1C1 LTR MaLR 1 378 0 6 1022 865 136 0 13 chr3 57395355 57395511 -102204272 + (TTTC)n Simple_repeat Simple_repeat 2 155 0 6 1022 1158 69 0 14 chr3 57395514 57395661 -102204122 - B1_Mus2 SINE Alu 0 147 3 6 1022 549 30 0 0 chr3 57396371 57396438 -102203345 + (TG)n Simple_repeat Simple_repeat 1 67 0 6 1022 480 263 34 8 chr3 57396451 57396570 -102203213 - RSINE1 SINE B4 -19 146 25 6 1022 284 298 32 0 chr3 57397714 57397808 -102201975 - PB1D10 SINE Alu 0 117 21 6 1022 702 196 280 0 chr3 57398442 57398610 -102201173 - B3 SINE B2 0 216 2 6 1022 1133 54 7 0 chr3 57398680 57398829 -102200954 + (TAGA)n Simple_repeat Simple_repeat 1 150 0 6 1022 460 240 10 0 chr3 57398928 57399028 -102200755 + ID_B1 SINE B4 97 197 -27 6 1022 423 0 0 0 chr3 57399071 57399118 -102200665 + (CAAAA)n Simple_repeat Simple_repeat 2 48 0 6 1022 413 270 39 23 chr3 57399272 57399401 -102200382 + ID_B1 SINE B4 80 210 -14 6 1022 336 286 73 29 chr3 57399278 57399415 -102200368 + B1F2 SINE Alu 5 147 -2 6 1022 345 236 87 78 chr3 57399936 57400051 -102199732 - PB1D9 SINE Alu 0 120 5 6 1022 531 0 0 0 chr3 57400257 57400316 -102199467 + (TC)n Simple_repeat Simple_repeat 2 60 0 6 1022 2470 123 25 151 chr3 57400569 57401094 -102198689 - RMER6B LTR ERVK -2 459 1 6 1022 477 250 58 0 chr3 57401197 57401317 -102198466 - RLTR28B LTR ERVL -337 144 18 6 1022 1454 66 16 0 chr3 57401661 57401843 -102197940 - B2_Mm2 SINE B2 -8 187 3 6 1022 833 284 22 98 chr3 57401946 57402109 -102197674 - B4A SINE B4 0 292 148 7 1022 672 250 56 0 chr3 57402109 57402305 -102197478 - B3 SINE B2 -7 209 3 7 1022 833 284 22 98 chr3 57402305 57402457 -102197326 - B4A SINE B4 -145 147 1 7 1022 216 265 0 0 chr3 57402465 57402514 -102197269 + CT-rich Low_complexity Low_complexity 1 49 0 7 1022 1339 121 21 0 chr3 57402514 57402704 -102197079 - B2_Mm2 SINE B2 -1 194 1 7 1022 803 125 0 7 chr3 57402715 57402852 -102196931 + (TTCC)n Simple_repeat Simple_repeat 2 137 0 7 1022 243 111 22 0 chr3 57402870 57402915 -102196868 + B1_Mus2 SINE Alu 102 147 0 7 1022 1953 138 98 50 chr3 57402984 57403192 -102196591 - MTC LTR MaLR -5 416 191 7 1022 530 300 57 141 chr3 57403192 57403864 -102195919 + RLTR18 LTR ERVK 2 616 0 7 1022 1953 138 98 50 chr3 57403864 57404051 -102195732 - MTC LTR MaLR -231 190 2 7 1022 630 71 0 0 chr3 57405117 57405201 -102194582 + (GGA)n Simple_repeat Simple_repeat 2 85 0 7 1022 319 329 54 60 chr3 57405214 57405363 -102194420 + B3A SINE B2 50 197 -1 7 1022 582 104 0 0 chr3 57405453 57405549 -102194234 + (CA)n Simple_repeat Simple_repeat 1 96 0 7 1022 1154 56 21 0 chr3 57405808 57405944 -102193839 + B1_Mm SINE Alu 1 139 -8 7 1022 269 26 26 0 chr3 57405944 57405982 -102193801 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 7 1022 957 104 22 0 chr3 57406065 57406199 -102193584 + B1_Mus1 SINE Alu 5 141 -7 7 1022 315 0 0 0 chr3 57406202 57406237 -102193546 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 7 1022 786 200 0 27 chr3 57407087 57407236 -102192547 + B1_Mur3 SINE Alu 5 149 0 7 1022 492 18 0 0 chr3 57407326 57407383 -102192400 + (TG)n Simple_repeat Simple_repeat 1 57 0 7 1022 1596 174 29 125 chr3 57407531 57407978 -102191805 - RMER10A LTR ERVL -7 435 32 7 1022 241 200 0 0 chr3 57408018 57408068 -102191715 - RSINE1 SINE B4 -24 141 92 7 1022 308 217 72 0 chr3 57408312 57408381 -102191402 + ID4 SINE ID 1 74 -9 7 1022 895 248 5 25 chr3 57409172 57409375 -102190408 + B3 SINE B2 1 199 -17 7 1023 342 231 29 235 chr3 57409883 57410160 -102189623 + RLTR42 LTR ERVK 1 220 -19 7 1023 408 243 97 35 chr3 57410534 57410741 -102189042 - L1MB3 LINE L1 -313 5999 5783 7 1023 2952 248 144 33 chr3 57410806 57411653 -102188130 - Lx6 LINE L1 -2 7458 6518 7 1023 887 252 67 12 chr3 57411639 57411892 -102187891 + Lx6 LINE L1 5974 6240 -1220 7 1023 485 307 107 0 chr3 57412092 57412232 -102187551 + RSINE1 SINE B4 11 165 0 7 1023 289 152 0 0 chr3 57412685 57412744 -102187039 + Lx5 LINE L1 904 962 -6766 7 1023 363 180 2 35 chr3 57412723 57412814 -102186969 + Lx5 LINE L1 1863 1948 -3929 7 1023 3124 169 47 9 chr3 57412861 57413439 -102186344 + Lx5 LINE L1 5104 5703 -174 7 1023 1845 286 82 100 chr3 57413439 57413512 -102186271 + Lx5 LINE L1 5864 5945 -1105 7 1023 3205 31 39 3 chr3 57413512 57413894 -102185889 - MTA_Mm LTR MaLR 0 396 1 7 1023 1845 281 110 79 chr3 57413894 57414737 -102185046 + Lx5 LINE L1 5946 7167 -293 7 1023 1794 167 193 64 chr3 57414737 57415204 -102184579 + RLTR11A2 LTR ERVK 1 527 0 7 1023 839 263 207 9 chr3 57415204 57415348 -102184435 + Lx5 LINE L1 7168 7345 -115 7 1023 214 236 0 0 chr3 57415668 57415723 -102184060 + (CCCCG)n Simple_repeat Simple_repeat 3 57 0 7 1023 357 254 82 0 chr3 57415974 57416084 -102183699 + B1F SINE Alu 2 120 -29 7 1023 284 289 12 0 chr3 57416089 57416172 -102183611 + GA-rich Low_complexity Low_complexity 2 85 0 7 1023 305 200 0 0 chr3 57416330 57416385 -102183398 - B2_Mm2 SINE B2 -94 101 47 7 1023 1108 96 71 6 chr3 57416432 57416600 -102183183 - B2_Mm1t SINE B2 -14 179 1 7 1023 849 77 297 14 chr3 57417125 57417270 -102182513 - B2_Mm2 SINE B2 -9 186 1 7 1023 257 135 19 0 chr3 57417784 57417836 -102181947 + CT-rich Low_complexity Low_complexity 1 53 0 7 1023 759 254 54 0 chr3 57418140 57418345 -102181438 + B3 SINE B2 1 216 0 7 1023 1180 42 7 0 chr3 57418578 57418721 -102181062 + B1_Mm SINE Alu 1 144 -3 7 1023 417 39 0 0 chr3 57418726 57418777 -102181006 + (GA)n Simple_repeat Simple_repeat 2 52 0 7 1023 324 0 0 0 chr3 57419153 57419189 -102180594 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 7 1023 300 155 12 33 chr3 57419198 57419271 -102180512 - B2_Mm2 SINE B2 -95 121 47 7 1023 1273 74 5 69 chr3 57419318 57419507 -102180276 - B2_Mm1a SINE B2 -14 179 3 7 1023 294 51 85 0 chr3 57419517 57419576 -102180207 + (TTTTG)n Simple_repeat Simple_repeat 2 65 0 7 1023 276 262 155 0 chr3 57419891 57419975 -102179808 - B3A SINE B2 -101 97 1 7 1023 504 117 0 0 chr3 57420145 57420222 -102179561 + (TC)n Simple_repeat Simple_repeat 2 78 0 7 1023 1117 69 7 14 chr3 57420223 57420370 -102179413 - B1_Mus1 SINE Alu -2 146 1 7 1023 966 298 127 21 chr3 57420535 57420955 -102178828 - L1MA4 LINE L1 -371 5929 5440 7 1023 809 252 50 0 chr3 57420955 57421157 -102178626 - B3 SINE B2 -1 215 4 7 1023 966 303 43 163 chr3 57421157 57421223 -102178560 - L1MA4 LINE L1 -441 5439 5417 7 1023 1167 54 0 20 chr3 57421223 57421373 -102178410 - B1_Mus2 SINE Alu 0 147 1 7 1023 966 303 43 163 chr3 57421373 57421425 -102178358 - L1MA4 LINE L1 -464 5416 5381 7 1023 466 237 60 80 chr3 57421425 57421576 -102178207 - B1F2 SINE Alu 0 149 2 7 1023 1353 293 19 36 chr3 57421576 57422153 -102177630 - L1MA4 LINE L1 -744 5399 4833 7 1023 1382 57 51 6 chr3 57422153 57422331 -102177452 - B2_Mm2 SINE B2 -9 186 1 7 1023 966 303 43 163 chr3 57422331 57422371 -102177412 - L1MA4 LINE L1 -1048 4832 4822 7 1023 889 246 19 10 chr3 57422371 57422576 -102177207 - B3 SINE B2 -5 211 5 7 1023 966 303 43 163 chr3 57422576 57422769 -102177014 - L1MA4 LINE L1 -1059 4821 4673 7 1023 638 25 12 0 chr3 57422773 57422853 -102176930 + (TCTA)n Simple_repeat Simple_repeat 4 84 0 7 1023 568 171 51 58 chr3 57422856 57422993 -102176790 - B1_Mus1 SINE Alu -5 143 8 7 1023 532 290 0 0 chr3 57423006 57423130 -102176653 - B3 SINE B2 -66 150 27 7 1023 729 162 28 14 chr3 57423139 57423283 -102176500 - B1_Mus1 SINE Alu 0 148 3 7 1023 21 36 0 0 chr3 57423434 57423462 -102176321 + AT_rich Low_complexity Low_complexity 1 28 0 7 1023 525 302 31 0 chr3 57423472 57423601 -102176182 - RSINE1 SINE B4 -10 155 23 7 1023 454 309 17 56 chr3 57423693 57423871 -102175912 + MTC LTR MaLR 10 180 -241 7 1023 321 177 278 23 chr3 57423887 57424020 -102175763 + MTC LTR MaLR 239 405 -14 7 1023 670 249 156 29 chr3 57424847 57425140 -102174643 - ORR1D1 LTR MaLR -29 341 1 7 1023 234 325 74 74 chr3 57425311 57425594 -102174189 + L2 LINE L2 2537 2819 -600 7 1023 204 78 58 19 chr3 57425719 57425771 -102174012 + A-rich Low_complexity Low_complexity 4 57 0 7 1023 993 261 119 9 chr3 57426799 57427136 -102172647 + MTD LTR MaLR 42 415 -4 7 1023 319 211 38 38 chr3 57427941 57428020 -102171763 + B1_Mur2 SINE Alu 71 149 0 7 1023 490 211 0 21 chr3 57428043 57428133 -102171650 + B1_Mur2 SINE Alu 55 144 -5 7 1023 1100 49 0 7 chr3 57428133 57428277 -102171506 + (GAAA)n Simple_repeat Simple_repeat 2 144 0 7 1023 772 148 14 43 chr3 57428504 57428645 -102171138 - B1_Mur2 SINE Alu 0 149 13 7 1023 396 155 0 0 chr3 57428655 57428726 -102171057 + CT-rich Low_complexity Low_complexity 2 72 0 7 1023 374 0 0 21 chr3 57428739 57428786 -102170997 + (TG)n Simple_repeat Simple_repeat 1 46 0 7 1023 406 329 18 12 chr3 57428791 57428954 -102170829 - RSINE1 SINE B4 0 165 2 7 1023 273 318 54 45 chr3 57429160 57429272 -102170511 + RSINE1 SINE B4 12 124 -41 7 1023 342 0 0 0 chr3 57429276 57429314 -102170469 + (CA)n Simple_repeat Simple_repeat 2 39 0 7 1023 430 212 307 9 chr3 57430374 57430488 -102169295 - B1_Mur1 SINE Alu -1 148 1 7 1023 300 116 0 0 chr3 57430680 57430723 -102169060 + (TCTCC)n Simple_repeat Simple_repeat 4 46 0 7 1023 610 227 0 12 chr3 57430723 57430888 -102168895 + CT-rich Low_complexity Low_complexity 2 164 0 7 1023 295 280 9 48 chr3 57430906 57431011 -102168772 - PB1D10 SINE Alu -16 101 1 7 1023 1338 277 108 33 chr3 57431032 57431343 -102168440 - L1MB3 LINE L1 -39 6144 5792 7 1023 1262 109 118 10 chr3 57431343 57431547 -102168236 + URR1A DNA MER1_type 1 226 0 7 1023 1338 277 108 33 chr3 57431547 57431895 -102167888 - L1MB3 LINE L1 -392 5791 5436 7 1023 543 191 0 43 chr3 57431900 57432015 -102167768 - B1_Mur1 SINE Alu 0 149 40 7 1023 486 234 0 0 chr3 57432018 57432358 -102167425 + CT-rich Low_complexity Low_complexity 1 340 0 7 1023 321 214 0 0 chr3 57432375 57432478 -102167305 + CT-rich Low_complexity Low_complexity 2 104 0 7 1023 230 176 39 0 chr3 57432483 57432534 -102167249 - PB1D9 SINE Alu -61 59 7 7 1023 647 251 39 28 chr3 57432540 57432761 -102167022 - L1MB3 LINE L1 -738 5442 5224 7 1023 589 152 0 71 chr3 57433151 57433278 -102166505 - PB1D9 SINE Alu -2 118 1 7 1023 640 225 134 36 chr3 57433401 57433595 -102166188 - B3 SINE B2 -3 213 1 7 1023 518 189 184 27 chr3 57433730 57433877 -102165906 - MTD LTR MaLR -14 405 236 7 1023 806 189 24 6 chr3 57433904 57434069 -102165714 - MTD LTR MaLR -247 172 5 7 1023 1687 228 47 54 chr3 57434164 57434701 -102165082 - RMER5 LTR ERV1 -1 533 1 7 1023 1341 86 16 21 chr3 57434763 57434954 -102164829 - B2_Mm2 SINE B2 -5 190 1 7 1023 265 225 86 43 chr3 57434957 57435050 -102164733 - L1MB3 LINE L1 -2038 4102 4006 7 1023 281 194 21 41 chr3 57435122 57435180 -102164603 + (TTTA)n Simple_repeat Simple_repeat 3 60 0 7 1023 1275 96 31 16 chr3 57435180 57435371 -102164412 - B2_Mm2 SINE B2 0 195 2 7 1023 281 194 21 41 chr3 57435371 57435409 -102164374 + (TTTA)n Simple_repeat Simple_repeat 2 38 0 7 1023 388 255 92 0 chr3 57435423 57435521 -102164262 - PB1D9 SINE Alu -13 107 1 7 1023 519 258 132 0 chr3 57435565 57435724 -102164059 - B3A SINE B2 -18 180 1 7 1023 335 266 146 25 chr3 57435777 57435935 -102163848 - L1MB3 LINE L1 -2208 3932 3756 7 1023 565 219 264 29 chr3 57436095 57436269 -102163514 - B3 SINE B2 0 216 2 7 1023 3095 49 15 10 chr3 57436679 57437073 -102162710 - MTA_Mm LTR MaLR 0 396 1 7 1023 462 304 54 7 chr3 57437128 57437277 -102162506 + RSINE1 SINE B4 3 158 -7 7 1023 789 254 16 11 chr3 57437530 57437713 -102162070 + B3 SINE B2 3 186 -30 7 1023 261 277 12 12 chr3 57437955 57438039 -102161744 + B3 SINE B2 133 216 0 7 1023 1956 104 88 60 chr3 57438310 57438628 -102161155 - ORR1A2 LTR MaLR 0 327 1 7 1023 481 267 138 0 chr3 57440253 57440478 -102159305 + L1MB7 LINE L1 5782 6037 -147 7 1023 404 273 99 0 chr3 57440649 57440770 -102159013 + RSINE1 SINE B4 11 143 -22 7 1023 445 248 79 21 chr3 57440863 57441003 -102158780 - MT2A LTR ERVL -385 148 1 7 1023 743 197 7 14 chr3 57441068 57441207 -102158576 + B1_Mur1 SINE Alu 1 138 -11 8 1023 417 39 0 0 chr3 57441212 57441263 -102158520 + (CATA)n Simple_repeat Simple_repeat 2 52 0 8 1023 443 215 113 24 chr3 57441288 57441412 -102158371 + B1_Mur1 SINE Alu 14 148 -1 8 1023 943 170 0 0 chr3 57442911 57443058 -102156725 - B1_Mus2 SINE Alu 0 147 1 8 1023 252 258 198 40 chr3 57443232 57443333 -102156450 + PB1D10 SINE Alu 11 127 0 8 1023 1308 93 16 5 chr3 57443527 57443711 -102156072 + B2_Mm2 SINE B2 2 187 -8 8 1023 771 219 192 22 chr3 57443908 57444090 -102155693 + B3 SINE B2 1 213 -3 8 1023 2097 118 95 6 chr3 57444117 57444442 -102155341 + Lx4A LINE L1 6705 7058 0 8 1023 734 162 7 7 chr3 57444594 57444731 -102155052 - B1_Mus2 SINE Alu 0 147 11 8 1023 21 36 0 0 chr3 57444731 57444759 -102155024 + AT_rich Low_complexity Low_complexity 1 28 0 8 1023 601 309 67 26 chr3 57444894 57445163 -102154620 - B4A SINE B4 -2 290 11 8 1023 757 246 44 29 chr3 57445232 57445437 -102154346 + B3 SINE B2 6 213 -3 8 1023 297 292 244 9 chr3 57445467 57445684 -102154099 + B4A SINE B4 1 268 -24 8 1023 207 0 0 0 chr3 57445730 57445753 -102154030 + (CA)n Simple_repeat Simple_repeat 2 24 0 8 1023 1516 243 64 15 chr3 57445772 57446227 -102153556 + L1MA4 LINE L1 3776 4252 -1891 8 1023 231 36 0 0 chr3 57446231 57446259 -102153524 + (CA)n Simple_repeat Simple_repeat 2 29 0 8 1023 258 212 58 12 chr3 57446260 57446346 -102153437 + L1MA4 LINE L1 4345 4434 -1709 8 1023 978 252 130 3 chr3 57446346 57446668 -102153115 + ORR1D2 LTR MaLR 2 364 -6 8 1023 994 251 79 58 chr3 57446674 57446920 -102152863 + L1MA4 LINE L1 4432 4683 -1460 8 1023 505 183 225 0 chr3 57446920 57447040 -102152743 - B1_Mur1 SINE Alu -1 148 2 8 1023 994 251 79 58 chr3 57447040 57447187 -102152596 + L1MA4 LINE L1 4684 4833 -1310 8 1023 240 197 68 27 chr3 57447201 57447274 -102152509 + L1_Rod LINE L1 5142 5217 -630 8 1023 726 170 93 29 chr3 57447298 57447437 -102152346 + B1_Mus1 SINE Alu 1 148 0 8 1023 611 222 199 6 chr3 57447462 57447643 -102152140 + ID_B1 SINE B4 8 223 -1 8 1023 186 43 0 0 chr3 57447650 57447673 -102152110 + (CAAA)n Simple_repeat Simple_repeat 3 25 0 8 1023 254 277 0 0 chr3 57447771 57447836 -102151947 + L1MA4 LINE L1 5422 5486 -814 8 1023 334 284 0 22 chr3 57447841 57447931 -102151852 + B1_Mur1 SINE Alu 62 149 0 8 1023 802 278 75 82 chr3 57447941 57448254 -102151529 + L1MA4 LINE L1 5491 5791 -509 8 1023 804 211 87 58 chr3 57448254 57448460 -102151323 - B3 SINE B2 -4 212 1 8 1023 802 278 75 82 chr3 57448460 57448597 -102151186 + L1MA4 LINE L1 5792 5938 -362 8 1023 393 270 130 0 chr3 57449140 57449255 -102150528 - B1_Mur1 SINE Alu -13 136 7 8 1023 421 258 11 0 chr3 57449547 57449640 -102150143 + RSINE1 SINE B4 12 105 -60 8 1023 1124 199 19 0 chr3 57449729 57449935 -102149848 + B3 SINE B2 1 210 -6 8 1023 2737 61 0 40 chr3 57450949 57451324 -102148459 + L1_Mus1 LINE L1 6208 6567 0 8 1023 469 221 11 0 chr3 57451391 57451486 -102148297 + B1_Mur1 SINE Alu 53 148 -1 8 1023 1198 48 0 7 chr3 57451505 57451652 -102148131 + B1_Mm SINE Alu 2 147 0 8 1023 212 0 36 0 chr3 57451663 57451691 -102148092 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 8 1023 22 0 0 0 chr3 57451702 57451724 -102148059 + AT_rich Low_complexity Low_complexity 1 22 0 8 1023 569 301 72 10 chr3 57451725 57451920 -102147863 - MER58A DNA MER1_type 0 224 18 8 1023 756 190 42 0 chr3 57451944 57452086 -102147697 + B1_Mus1 SINE Alu 1 148 0 8 1023 3482 18 8 0 chr3 57452379 57452772 -102147011 - MTA_Mm LTR MaLR 0 396 1 8 1023 396 244 22 11 chr3 57453011 57453102 -102146681 - PB1 SINE Alu -9 118 27 8 1023 247 244 49 37 chr3 57453230 57453311 -102146472 - ID4 SINE ID 0 83 2 8 1023 249 253 247 21 chr3 57453673 57453770 -102146013 + RSINE1 SINE B4 37 155 -10 8 1023 365 0 22 0 chr3 57454699 57454744 -102145039 + (TGG)n Simple_repeat Simple_repeat 2 47 0 8 1023 440 239 83 25 chr3 57455836 57455956 -102143827 + B3A SINE B2 4 130 -68 8 1023 760 148 7 13 chr3 57455956 57456107 -102143676 + (TATATG)n Simple_repeat Simple_repeat 4 153 0 8 1023 582 281 13 13 chr3 57456761 57456916 -102142867 + RSINE1 SINE B4 3 157 -8 8 1023 688 174 57 14 chr3 57457613 57457753 -102142030 - B1_Mus2 SINE Alu 0 147 2 8 1023 545 304 48 63 chr3 57458118 57458452 -102141331 + L1M5 LINE L1 5493 5821 -343 8 1023 522 284 7 10 chr3 57458459 57458610 -102141173 + B1F SINE Alu 3 149 -1 8 1023 1169 74 0 0 chr3 57458615 57458763 -102141020 + B1_Mus1 SINE Alu 1 148 0 8 1023 211 140 0 23 chr3 57458763 57458807 -102140976 + A-rich Low_complexity Low_complexity 4 46 0 8 1023 194 0 39 0 chr3 57459316 57459342 -102140441 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 8 1023 1198 42 14 0 chr3 57459342 57459485 -102140298 - B1_Mus2 SINE Alu -2 145 1 8 1023 1481 60 27 0 chr3 57459489 57459672 -102140111 - B2_Mm2 SINE B2 -5 190 3 8 1023 1402 65 54 0 chr3 57459840 57460025 -102139758 + B2_Mm2 SINE B2 1 195 0 8 1023 338 261 0 11 chr3 57460054 57460143 -102139640 + MT2A LTR ERVL 3 90 -443 8 1023 285 343 0 20 chr3 57460143 57460155 -102139628 + MTEa LTR MaLR 3 101 -278 8 1023 2642 32 0 0 chr3 57460176 57460484 -102139299 - L1Md_F2 LINE L1 -2 6580 6273 8 1023 248 221 87 14 chr3 57460486 57460555 -102139228 + MT2A LTR ERVL 76 149 -384 8 1023 1263 163 122 20 chr3 57460558 57460881 -102138902 - ORR1C2 LTR MaLR -2 382 33 8 1023 614 282 98 44 chr3 57460881 57461215 -102138568 + MT2A LTR ERVL 131 533 0 8 1023 270 0 0 0 chr3 57461490 57461520 -102138263 + (CAAAA)n Simple_repeat Simple_repeat 5 34 0 8 1023 844 230 91 5 chr3 57462034 57462231 -102137552 + B3 SINE B2 3 216 0 8 1023 23 0 0 0 chr3 57462231 57462254 -102137529 + AT_rich Low_complexity Low_complexity 1 23 0 8 1023 562 275 61 81 chr3 57463124 57463167 -102136616 - B3 SINE B2 -21 195 164 8 1023 369 0 0 0 chr3 57463167 57463208 -102136575 + (TCTA)n Simple_repeat Simple_repeat 2 42 0 8 1023 565 248 98 22 chr3 57463208 57463362 -102136421 - B3A SINE B2 -53 163 2 8 1023 1883 193 261 21 chr3 57465182 57465460 -102134323 + L1_Mur3 LINE L1 1827 1981 -3896 8 1023 5047 49 2 5 chr3 57465460 57466076 -102133707 + L1Md_F2 LINE L1 5964 6577 -5 8 1023 1883 169 497 14 chr3 57466076 57466787 -102132996 + L1_Mur3 LINE L1 1982 3110 -2767 8 1023 964 274 73 41 chr3 57466786 57467155 -102132628 + Lx6 LINE L1 7054 7434 -26 8 1023 328 257 101 54 chr3 57467156 57467364 -102132419 + L1ME3A LINE L1 5678 5897 -265 8 1023 1037 78 0 0 chr3 57467655 57467796 -102131987 - B1_Mus2 SINE Alu 0 147 7 8 1023 230 122 24 0 chr3 57468433 57468474 -102131309 - PB1D10 SINE Alu 0 117 76 8 1023 273 57 0 0 chr3 57468483 57468518 -102131265 + (CCCCCA)n Simple_repeat Simple_repeat 2 36 0 8 1023 247 228 148 0 chr3 57469796 57469897 -102129886 + B4 SINE B4 107 222 -70 8 1023 185 94 31 0 chr3 57469951 57469983 -102129800 + (CA)n Simple_repeat Simple_repeat 2 34 0 8 1023 216 0 0 0 chr3 57469992 57470016 -102129767 + (T)n Simple_repeat Simple_repeat 1 24 0 8 1023 542 268 29 7 chr3 57470016 57470155 -102129628 - ID_B1 SINE B4 0 224 83 8 1023 639 0 0 0 chr3 57470385 57470456 -102129327 + (TTTC)n Simple_repeat Simple_repeat 2 72 0 8 1023 203 308 62 0 chr3 57470715 57470780 -102129003 + L2a LINE L2 3348 3416 -10 8 1023 186 298 53 0 chr3 57470834 57470891 -102128892 + MIR SINE MIR 119 178 -84 8 1023 913 152 0 7 chr3 57471893 57472032 -102127751 + B1_Mus2 SINE Alu 2 139 -8 8 1023 414 0 0 0 chr3 57472032 57472078 -102127705 + (CCAA)n Simple_repeat Simple_repeat 2 47 0 8 1023 283 273 30 104 chr3 57472794 57472929 -102126854 - RCHARR1 DNA MER1_type -2 972 848 8 1023 488 292 8 0 chr3 57472938 57473058 -102126725 + RSINE1 SINE B4 2 122 -43 8 1023 658 275 28 6 chr3 57473133 57473312 -102126471 + B3A SINE B2 15 197 -1 8 1023 905 126 0 27 chr3 57473317 57473464 -102126319 - B1_Mus1 SINE Alu 0 148 6 8 1023 597 225 42 0 chr3 57473488 57473630 -102126153 - RCHARR1 DNA MER1_type -244 730 583 8 1023 911 322 7 17 chr3 57473658 57473952 -102125831 - B4A SINE B4 -1 291 1 8 1023 435 349 0 63 chr3 57473965 57474124 -102125659 - B1F2 SINE Alu 0 149 1 8 1023 264 30 0 0 chr3 57474889 57474922 -102124861 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 8 1023 28 0 0 0 chr3 57475326 57475354 -102124429 + AT_rich Low_complexity Low_complexity 1 28 0 8 1023 929 79 171 29 chr3 57475903 57476073 -102123710 + B2_Mm2 SINE B2 2 195 0 8 1023 407 302 99 45 chr3 57476085 57476286 -102123497 + B3 SINE B2 2 213 -3 8 1023 279 238 150 71 chr3 57477846 57477959 -102121824 + ID_B1 SINE B4 102 223 -1 8 1023 562 247 13 58 chr3 57478396 57478551 -102121232 + B3A SINE B2 13 160 -38 8 1023 198 0 0 0 chr3 57478556 57478578 -102121205 + (TGG)n Simple_repeat Simple_repeat 2 23 0 8 1023 1301 242 91 36 chr3 57478588 57478627 -102121156 - RLTR20B3 LTR ERVK -56 521 477 8 1023 450 36 0 0 chr3 57478627 57478683 -102121100 + (CA)n Simple_repeat Simple_repeat 2 57 0 8 1023 1301 242 91 36 chr3 57478683 57479118 -102120665 - RLTR20B3 LTR ERVK -101 476 22 8 1023 1329 94 28 0 chr3 57479136 57479317 -102120466 - B2_Mm2 SINE B2 -9 186 1 8 1023 1806 215 74 83 chr3 57480030 57480502 -102119281 + RLTR18B LTR ERVK 2 469 -43 8 1023 485 325 0 63 chr3 57480614 57480788 -102118995 + RSINE1 SINE B4 3 165 0 8 1023 1745 130 97 16 chr3 57480935 57481255 -102118528 + ORR1B1 LTR MaLR 41 386 -8 8 1023 4996 186 58 48 chr3 57481368 57482413 -102117370 + RMER1B Other Other 2 1057 -9 8 1023 2880 124 12 5 chr3 57482690 57483120 -102116663 - RLTR10C LTR ERVK -3 433 1 8 1023 258 32 0 0 chr3 57483127 57483158 -102116625 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 8 1023 5284 117 92 18 chr3 57483158 57484049 -102115734 + RMER17B LTR ERVK 2 958 0 8 1023 1735 217 30 37 chr3 57484515 57484946 -102114837 + Lx6 LINE L1 6467 6894 -566 8 1023 411 145 0 0 chr3 57484946 57485015 -102114768 + (GA)n Simple_repeat Simple_repeat 1 69 0 9 1023 1786 266 18 5 chr3 57485015 57485415 -102114368 + Lx6 LINE L1 6883 7287 -173 8 1023 644 245 123 0 chr3 57485553 57485716 -102114067 + B3A SINE B2 16 198 0 9 1023 468 331 17 11 chr3 57485748 57485925 -102113858 + MLT1N2 LTR MaLR 372 549 -13 9 1023 2936 6 0 0 chr3 57486130 57486452 -102113331 + RLTRETN_Mm LTR ERVK 1 322 0 9 1023 43085 18 1 3 chr3 57486452 57491306 -102108477 + MMETn-int LTR ERVK 1 4844 0 9 1023 2906 9 0 0 chr3 57491306 57491628 -102108155 + RLTRETN_Mm LTR ERVK 1 322 0 9 1023 183 100 0 0 chr3 57491788 57491818 -102107965 + (TTTG)n Simple_repeat Simple_repeat 1 30 0 9 1023 597 193 0 0 chr3 57491819 57491928 -102107855 - B1_Mur3 SINE Alu 0 149 41 9 1023 500 206 0 0 chr3 57493008 57493100 -102106683 - MTD LTR MaLR -327 92 1 9 1023 513 307 55 22 chr3 57493466 57493649 -102106134 + B3A SINE B2 4 192 -6 9 1023 545 271 83 0 chr3 57493656 57493800 -102105983 + B3A SINE B2 1 156 -42 9 1023 405 283 0 0 chr3 57494034 57494133 -102105650 - PB1D10 SINE Alu -17 100 2 9 1023 286 306 0 0 chr3 57494460 57494522 -102105261 + polypyrimidine Low_complexity Low_complexity 4 65 0 9 1023 672 249 137 5 chr3 57494663 57494853 -102104930 - B3 SINE B2 -1 215 1 9 1023 584 267 70 35 chr3 57494853 57495167 -102104616 + Charlie4a DNA MER1_type 70 394 -114 9 1023 588 191 175 0 chr3 57495463 57495589 -102104194 + B1_Mur2 SINE Alu 1 148 -1 9 1023 369 0 0 0 chr3 57497037 57497078 -102102705 + (TC)n Simple_repeat Simple_repeat 2 42 0 9 1023 3019 235 49 9 chr3 57497078 57497202 -102102581 - Lx6 LINE L1 -18 7442 7323 9 1023 324 0 0 0 chr3 57497202 57497238 -102102545 + (CAA)n Simple_repeat Simple_repeat 2 37 0 9 1023 3019 235 49 9 chr3 57497238 57497783 -102102000 - Lx6 LINE L1 -138 7322 6748 9 1023 764 209 0 6 chr3 57497788 57497966 -102101817 + CT-rich Low_complexity Low_complexity 4 180 0 9 1023 275 266 248 0 chr3 57497967 57498076 -102101707 - Lx6 LINE L1 -710 6750 6615 9 1023 760 254 91 61 chr3 57498071 57498151 -102101632 + Lx6 LINE L1 6381 6463 -997 9 1023 1276 188 5 0 chr3 57498151 57498375 -102101408 - URR1A DNA MER1_type 0 226 2 9 1023 760 254 91 61 chr3 57498375 57498525 -102101258 + Lx6 LINE L1 6464 6618 -842 9 1023 182 339 0 0 chr3 57498763 57498822 -102100961 + L2b LINE L2 3312 3370 -5 9 1023 442 257 0 10 chr3 57498822 57498924 -102100859 + PB1D7 SINE Alu 18 118 -2 9 1023 3166 120 89 6 chr3 57499309 57499839 -102099944 + MT2B LTR ERVL 28 601 0 9 1023 1696 261 23 17 chr3 57501119 57501598 -102098185 - RLTR11A2 LTR ERVK -45 482 1 1 1023 1124 68 0 7 chr3 57501695 57501842 -102097941 - B1_Mus2 SINE Alu -1 146 1 2 1023 463 300 36 0 chr3 57502480 57502590 -102097193 + RSINE1 SINE B4 2 115 -50 3 1023 207 0 0 0 chr3 57502638 57502661 -102097122 + (CA)n Simple_repeat Simple_repeat 2 24 0 4 1023 4813 43 3 0 chr3 57502933 57503518 -102096265 + L1Md_F2 LINE L1 5996 6582 0 5 1023 1263 102 43 0 chr3 57503568 57503754 -102096029 - B2_Mm2 SINE B2 -1 194 1 6 1023 29 0 0 0 chr3 57503833 57503862 -102095921 + AT_rich Low_complexity Low_complexity 1 29 0 7 1023 1868 175 23 54 chr3 57503928 57504279 -102095504 + ORR1C1 LTR MaLR 1 340 -38 8 1023 31114 69 4 5 chr3 57504283 57509488 -102090295 + L1Md_F2 LINE L1 293 5589 -297 9 1023 7963 53 2 3 chr3 57509488 57510485 -102089298 + L1Md_F2 LINE L1 5590 6585 0 9 1023 476 225 8 0 chr3 57510608 57510737 -102089046 + (TA)n Simple_repeat Simple_repeat 2 131 0 1 1023 443 232 77 35 chr3 57510941 57511084 -102088699 + RSINE1 SINE B4 2 150 -15 1 1023 713 194 16 0 chr3 57511167 57511296 -102088487 + RSINE1 SINE B4 2 132 -33 1 1023 405 79 44 22 chr3 57511305 57511396 -102088387 + (TCTCTG)n Simple_repeat Simple_repeat 2 94 0 1 1023 670 305 90 68 chr3 57511414 57512225 -102087558 + Lx8 LINE L1 6175 7271 -202 1 1023 658 290 88 26 chr3 57512499 57512681 -102087102 - Lx8 LINE L1 -40 7433 7234 1 1023 291 28 0 0 chr3 57512681 57512717 -102087066 + (CAA)n Simple_repeat Simple_repeat 2 37 0 1 1023 658 290 88 26 chr3 57512717 57512839 -102086944 - Lx8 LINE L1 -240 7233 7111 1 1023 23 0 0 0 chr3 57512862 57512885 -102086898 + AT_rich Low_complexity Low_complexity 1 23 0 1 1023 252 0 0 0 chr3 57512898 57512926 -102086857 + (TG)n Simple_repeat Simple_repeat 1 28 0 1 1023 648 52 10 20 chr3 57513570 57513669 -102086114 + (TTCC)n Simple_repeat Simple_repeat 4 101 0 1 1023 871 166 0 14 chr3 57513669 57513809 -102085974 - B1_Mus2 SINE Alu -6 141 3 2 1023 418 254 0 33 chr3 57513813 57513935 -102085848 - L1MA4 LINE L1 -474 5826 5709 2 1023 517 259 84 6 chr3 57514005 57514172 -102085611 + B3A SINE B2 1 180 -18 2 1023 24 53 0 0 chr3 57514192 57514230 -102085553 + AT_rich Low_complexity Low_complexity 1 38 0 2 1023 25 31 0 0 chr3 57514405 57514437 -102085346 + AT_rich Low_complexity Low_complexity 1 32 0 2 1023 532 325 47 10 chr3 57514761 57514999 -102084784 - B4 SINE B4 -2 290 1 2 1023 947 226 62 0 chr3 57515029 57515224 -102084559 - B3 SINE B2 -9 207 1 2 1023 23 0 0 0 chr3 57515319 57515342 -102084441 + AT_rich Low_complexity Low_complexity 1 23 0 2 1023 543 231 0 9 chr3 57515342 57515439 -102084344 + B1_Mus1 SINE Alu 39 135 -13 2 1023 195 42 0 0 chr3 57515439 57515463 -102084320 + (CAAAA)n Simple_repeat Simple_repeat 1 24 0 2 1023 543 231 0 9 chr3 57515463 57515474 -102084309 + B1_Mus1 SINE Alu 136 146 -2 2 1023 1143 44 0 0 chr3 57515572 57515707 -102084076 + B1_Mm SINE Alu 1 135 -12 3 1023 198 0 0 0 chr3 57515707 57515729 -102084054 + (CAAA)n Simple_repeat Simple_repeat 3 24 0 3 1023 195 100 0 0 chr3 57516043 57516073 -102083710 + (C)n Simple_repeat Simple_repeat 1 30 0 3 1023 1154 241 43 31 chr3 57516098 57516423 -102083360 + RLTR22_Mur LTR ERVK 477 805 -1043 3 1023 2935 43 0 3 chr3 57516636 57516989 -102082794 - L1_Mus1 LINE L1 0 6567 6216 3 1023 3247 61 0 2 chr3 57516989 57517417 -102082366 + L1_Mm LINE L1 5372 5798 -85 3 1023 3503 103 25 23 chr3 57517411 57517977 -102081806 - Lx LINE L1 -27 6627 6061 3 1023 970 222 19 0 chr3 57518554 57518761 -102081022 + B3 SINE B2 5 215 -1 3 1023 736 239 66 5 chr3 57519372 57519570 -102080213 - B3 SINE B2 -6 210 1 3 1023 305 324 135 23 chr3 57519761 57520020 -102079763 - L1M4 LINE L1 -2219 3927 3640 3 1023 324 207 12 12 chr3 57520262 57520345 -102079438 - L1M4 LINE L1 -3403 2743 2661 3 1023 3654 176 33 57 chr3 57520353 57521565 -102078218 - Lx5 LINE L1 -826 6224 5066 4 1023 221 0 0 33 chr3 57521565 57521595 -102078188 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 4 1023 3654 184 9 97 chr3 57521595 57521652 -102078131 - Lx5 LINE L1 -815 5065 5006 4 1023 228 67 0 0 chr3 57521654 57521684 -102078099 + (T)n Simple_repeat Simple_repeat 1 30 0 4 1023 5868 143 19 13 chr3 57522235 57523322 -102076461 - Lx5 LINE L1 -952 4925 3832 4 1023 36 0 0 0 chr3 57524006 57524042 -102075741 + AT_rich Low_complexity Low_complexity 1 36 0 4 1023 25 31 0 0 chr3 57524316 57524348 -102075435 + AT_rich Low_complexity Low_complexity 1 32 0 4 1023 722 67 19 0 chr3 57524353 57524457 -102075326 + (GAAA)n Simple_repeat Simple_repeat 3 108 0 4 1023 2610 61 0 15 chr3 57524457 57524791 -102074992 - IAPEY3_LTR LTR ERVK 0 332 4 4 1023 849 38 0 0 chr3 57524791 57524896 -102074887 + (GAAA)n Simple_repeat Simple_repeat 4 108 0 4 1023 318 148 0 3 chr3 57525130 57525193 -102074590 + L1_Mur2 LINE L1 3286 3347 -2539 4 1023 3132 169 71 3 chr3 57525196 57525890 -102073893 - Lx5 LINE L1 -2509 3368 2628 4 1023 26652 114 34 18 chr3 57525910 57530243 -102069540 - L1_Mus3 LINE L1 -6 6632 2186 4 1023 1124 101 0 0 chr3 57530243 57530391 -102069392 + B1_Mus1 SINE Alu 1 148 0 5 1023 26652 134 16 31 chr3 57530391 57532249 -102067534 - L1_Mus3 LINE L1 -3698 2185 218 4 1023 1089 89 7 0 chr3 57532252 57532398 -102067385 - B1_Mus1 SINE Alu 0 148 2 5 1023 6908 158 37 14 chr3 57532399 57534035 -102065748 - Lx5 LINE L1 -3225 2652 980 4 1023 299 258 39 67 chr3 57534554 57534658 -102065125 - RMER30 DNA MER1_type -100 102 2 5 1023 320 273 125 7 chr3 57534691 57534835 -102064948 - L1M2 LINE L1 -3573 2570 2410 5 1023 943 54 0 8 chr3 57535003 57535134 -102064649 - L1_Mus1 LINE L1 -1 6566 6437 5 1023 273 308 0 0 chr3 57535207 57535311 -102064472 + MMTV-int LTR ERVK 6596 6699 -554 5 1023 3029 29 0 0 chr3 57535560 57535904 -102063879 - ORR1A0 LTR MaLR -2 344 1 5 1023 2310 201 128 85 chr3 57536249 57537175 -102062608 + RLTR25B LTR ERVK 18 899 -204 5 1023 507 33 0 0 chr3 57537175 57537236 -102062547 + (CA)n Simple_repeat Simple_repeat 2 62 0 5 1023 1511 237 148 155 chr3 57537236 57537403 -102062380 + RLTR25B LTR ERVK 900 1103 0 5 1023 414 203 0 0 chr3 57537407 57537550 -102062233 + (TA)n Simple_repeat Simple_repeat 2 144 0 5 1023 944 212 239 96 chr3 57537572 57538094 -102061689 + MT2B LTR ERVL 3 599 -2 6 1023 320 193 169 0 chr3 57538094 57538177 -102061606 + ORR1D1 LTR MaLR 278 374 0 6 1023 413 278 130 0 chr3 57538177 57538285 -102061498 - ID_B1 SINE B4 -18 206 84 6 1023 324 0 0 0 chr3 57538432 57538468 -102061315 + (TA)n Simple_repeat Simple_repeat 2 37 0 6 1023 248 263 41 94 chr3 57538878 57539002 -102060781 - ID2 SINE ID -27 125 1 6 1024 268 293 107 49 chr3 57540994 57541006 -102058777 - ID_B1 SINE B4 -15 209 82 6 1024 400 275 64 0 chr3 57541006 57541115 -102058668 - PB1D10 SINE Alu -1 116 1 6 1024 221 0 35 0 chr3 57541264 57541293 -102058490 + (TTTTTG)n Simple_repeat Simple_repeat 2 31 0 6 1024 186 43 0 0 chr3 57541342 57541365 -102058418 + (CAAAG)n Simple_repeat Simple_repeat 2 24 0 6 1024 407 315 6 74 chr3 57541447 57541622 -102058161 + RSINE1 SINE B4 3 165 0 6 1024 2904 36 8 3 chr3 57542307 57542667 -102057116 + L1Md_F3 LINE L1 6221 6582 -2 7 1024 23 0 0 0 chr3 57543122 57543145 -102056638 + AT_rich Low_complexity Low_complexity 1 23 0 7 1024 258 56 0 0 chr3 57543155 57543191 -102056592 + (T)n Simple_repeat Simple_repeat 1 36 0 7 1024 1677 26 0 0 chr3 57543192 57543383 -102056400 - B2_Mm1t SINE B2 -1 192 2 7 1024 569 284 67 7 chr3 57543397 57543546 -102056237 - RSINE1 SINE B4 -4 161 4 7 1024 192 40 0 0 chr3 57543566 57543591 -102056192 + (TTA)n Simple_repeat Simple_repeat 1 25 0 7 1024 258 351 8 58 chr3 57543621 57543742 -102056041 + B4 SINE B4 171 285 -7 7 1024 222 293 96 12 chr3 57544967 57545050 -102054733 + MIR SINE MIR 117 206 -56 7 1024 347 325 32 8 chr3 57545447 57545571 -102054212 - L2a LINE L2 -5 3421 3295 7 1024 21 0 0 0 chr3 57546858 57546879 -102052904 + AT_rich Low_complexity Low_complexity 1 21 0 7 1024 400 311 216 9 chr3 57547628 57547855 -102051928 + B4A SINE B4 1 274 -18 8 1024 499 300 40 22 chr3 57547931 57548207 -102051576 - L1MB5 LINE L1 -22 6152 5872 8 1024 340 291 104 11 chr3 57548273 57548541 -102051242 - L1MB5 LINE L1 -406 5768 5476 8 1024 429 316 21 41 chr3 57548642 57548787 -102050996 - B4A SINE B4 -2 290 149 8 1024 284 368 26 9 chr3 57548782 57548897 -102050886 - ID_B1 SINE B4 -93 131 15 8 1024 267 31 0 0 chr3 57548918 57548950 -102050833 + (CAAT)n Simple_repeat Simple_repeat 3 34 0 8 1024 533 216 160 0 chr3 57549022 57549147 -102050636 - B1_Mur1 SINE Alu 0 149 5 8 1024 255 230 121 45 chr3 57549172 57549304 -102050479 - L1MB5 LINE L1 -923 5410 5269 8 1024 885 154 14 7 chr3 57549306 57549450 -102050333 + B1_Mm SINE Alu 2 146 -1 8 1024 303 104 0 0 chr3 57549450 57549498 -102050285 + (CAAAC)n Simple_repeat Simple_repeat 5 52 0 8 1024 198 0 0 0 chr3 57549504 57549526 -102050257 + (CAAA)n Simple_repeat Simple_repeat 1 22 0 8 1024 532 264 25 45 chr3 57549546 57549744 -102050039 - B3A SINE B2 0 198 5 8 1024 537 229 91 16 chr3 57549805 57549991 -102049792 - L1MB5 LINE L1 -871 5275 5076 8 1024 219 173 0 0 chr3 57550007 57550059 -102049724 + CT-rich Low_complexity Low_complexity 1 52 0 9 1024 612 240 23 8 chr3 57550097 57550227 -102049556 - B1_Mur1 SINE Alu -16 133 2 9 1024 271 353 48 19 chr3 57550239 57550343 -102049440 - PB1D10 SINE Alu 0 117 11 9 1024 350 288 177 14 chr3 57550882 57551023 -102048760 - MTE-int LTR MaLR -50 1530 1367 9 1024 869 177 7 20 chr3 57551248 57551398 -102048385 - B1_Mur2 SINE Alu 0 149 2 9 1024 697 193 108 81 chr3 57551757 57551943 -102047840 - B3A SINE B2 -7 191 1 9 1024 236 307 79 11 chr3 57552013 57552102 -102047681 - B1F SINE Alu -7 142 48 9 1024 495 254 44 57 chr3 57552605 57552768 -102047015 + B3A SINE B2 28 188 -28 9 1024 27 29 0 0 chr3 57553554 57553588 -102046195 + AT_rich Low_complexity Low_complexity 1 34 0 9 1024 296 292 0 0 chr3 57553652 57553748 -102046035 + L1MB3 LINE L1 5086 5181 -965 9 1024 222 222 0 0 chr3 57553748 57553802 -102045981 + T-rich Low_complexity Low_complexity 1 54 0 1 1024 12298 87 46 22 chr3 57554353 57556164 -102043619 - L1VL2 LINE L1 -627 2988 1127 1 1024 4489 63 3 2 chr3 57556164 57556738 -102043045 - L1_Mus1 LINE L1 0 6567 5993 1 1024 6366 78 22 12 chr3 57556738 57557737 -102042046 - L1VL2 LINE L1 -2489 1126 116 1 1024 494 303 123 18 chr3 57557824 57558207 -102041576 + L1MB3 LINE L1 5254 5676 -507 9 1024 398 269 160 11 chr3 57558625 57558999 -102040784 + L1MB3 LINE L1 5721 6178 -2 9 1024 28 48 0 0 chr3 57559199 57559241 -102040542 + AT_rich Low_complexity Low_complexity 1 42 0 1 1024 240 130 0 0 chr3 57559262 57559308 -102040475 + (TA)n Simple_repeat Simple_repeat 2 47 0 1 1024 295 246 31 0 chr3 57559324 57559389 -102040394 - B1F SINE Alu -80 69 3 1 1024 495 0 0 0 chr3 57559527 57559582 -102040201 + (TCTA)n Simple_repeat Simple_repeat 3 57 0 1 1024 2832 73 0 0 chr3 57559613 57559983 -102039800 + L1_Mus1 LINE L1 6198 6567 0 1 1024 22411 53 1 2 chr3 57560029 57563739 -102036044 - L1Md_F2 LINE L1 -4 6578 2876 1 1024 409 217 59 7 chr3 57564100 57564253 -102035530 + (TG)n Simple_repeat Simple_repeat 2 162 0 1 1024 294 321 106 14 chr3 57564294 57564436 -102035347 - B4 SINE B4 -44 248 94 1 1024 278 358 9 27 chr3 57564805 57564917 -102034866 - PB1 SINE Alu -17 110 1 1 1024 1785 161 76 84 chr3 57565189 57565595 -102034188 - MTC LTR MaLR -18 403 1 1 1024 228 333 85 0 chr3 57566258 57566387 -102033396 - L1MB7 LINE L1 -56 6128 5989 1 1024 21 0 0 0 chr3 57566956 57566977 -102032806 + AT_rich Low_complexity Low_complexity 1 21 0 1 1024 25 31 0 0 chr3 57567160 57567192 -102032591 + AT_rich Low_complexity Low_complexity 1 32 0 1 1024 533 252 41 16 chr3 57567215 57567336 -102032447 + B1_Mur1 SINE Alu 20 143 -6 1 1024 346 275 57 71 chr3 57567221 57567362 -102032421 + B4A SINE B4 111 249 -43 1 1024 340 179 200 67 chr3 57567368 57567488 -102032295 + B1F2 SINE Alu 5 140 -9 1 1024 255 204 0 0 chr3 57567790 57567834 -102031949 - ID2 SINE ID -38 45 2 1 1024 645 219 20 40 chr3 57567906 57568058 -102031725 - B1_Mur3 SINE Alu 0 149 1 1 1024 334 268 96 12 chr3 57568396 57568562 -102031221 - Lx2B LINE L1 -10 6990 6811 1 1024 551 217 75 30 chr3 57568789 57568922 -102030861 - B1_Mus2 SINE Alu -5 142 4 1 1024 778 190 0 17 chr3 57568940 57569117 -102030666 + CT-rich Low_complexity Low_complexity 3 176 0 1 1024 410 269 0 21 chr3 57569117 57569212 -102030571 + polypyrimidine Low_complexity Low_complexity 4 96 0 1 1024 258 160 0 0 chr3 57569212 57569262 -102030521 + CT-rich Low_complexity Low_complexity 2 51 0 1 1024 231 267 0 16 chr3 57569624 57569685 -102030098 + MIR SINE MIR 13 72 -190 1 1024 279 71 0 0 chr3 57569701 57569743 -102030040 + (T)n Simple_repeat Simple_repeat 1 42 0 1 1024 883 170 108 44 chr3 57571634 57571837 -102027946 - B3 SINE B2 0 216 1 1 1024 659 175 0 9 chr3 57572047 57572162 -102027621 + URR1B DNA MER1_type 112 225 0 1 1024 22 0 0 0 chr3 57572328 57572350 -102027433 + AT_rich Low_complexity Low_complexity 1 22 0 1 1024 1718 128 32 7 chr3 57572361 57572645 -102027138 - Lx2 LINE L1 0 6997 6707 1 1024 373 301 25 66 chr3 57573174 57573295 -102026488 + PB1D7 SINE Alu 5 120 0 1 1024 1197 49 0 0 chr3 57573303 57573446 -102026337 + B1_Mm SINE Alu 5 147 0 1 1024 3587 43 105 2 chr3 57573457 57573923 -102025860 + L1_Mus1 LINE L1 6052 6565 -2 1 1024 664 186 113 0 chr3 57574379 57574503 -102025280 - B1_Mur1 SINE Alu 0 149 12 1 1024 229 311 57 19 chr3 57574421 57574526 -102025257 - MT2B2 LTR ERVL -324 260 152 1 1024 381 154 0 0 chr3 57574768 57574859 -102024924 + (TCTCTG)n Simple_repeat Simple_repeat 2 92 0 1 1024 207 100 0 0 chr3 57574859 57574889 -102024894 + (CA)n Simple_repeat Simple_repeat 1 30 0 1 1024 1416 59 32 0 chr3 57574971 57575158 -102024625 - B2_Mm1t SINE B2 0 193 1 1 1024 26 0 0 0 chr3 57575393 57575419 -102024364 + AT_rich Low_complexity Low_complexity 1 26 0 1 1024 215 292 15 0 chr3 57575694 57575759 -102024024 + (TG)n Simple_repeat Simple_repeat 1 66 0 1 1024 789 281 0 6 chr3 57575759 57575924 -102023859 - RSINE1 SINE B4 0 165 2 1 1024 531 255 331 6 chr3 57576098 57576325 -102023458 - MTD LTR MaLR 0 419 109 1 1024 234 0 0 0 chr3 57576325 57576351 -102023432 + (CA)n Simple_repeat Simple_repeat 2 27 0 1 1024 337 303 104 14 chr3 57576351 57576441 -102023342 - MTD LTR MaLR -271 108 10 1 1024 476 137 19 19 chr3 57576507 57576611 -102023172 - L1_Mus4 LINE L1 -1 6635 6532 1 1024 896 71 35 28 chr3 57576726 57576870 -102022913 - Lx LINE L1 -6 6648 6504 1 1024 996 229 97 21 chr3 57577233 57577563 -102022220 - Lx9 LINE L1 -160 7484 7130 1 1024 29 84 0 0 chr3 57577836 57577907 -102021876 + AT_rich Low_complexity Low_complexity 1 71 0 1 1024 1026 192 29 10 chr3 57577909 57578114 -102021669 - B3 SINE B2 -7 209 1 1 1024 604 13 0 0 chr3 57578253 57578330 -102021453 + L1Md_F2 LINE L1 6499 6575 -7 1 1024 862 55 0 15 chr3 57578433 57578563 -102021220 - L1Md_F2 LINE L1 0 6582 6455 1 1024 21 0 0 0 chr3 57579007 57579028 -102020755 + AT_rich Low_complexity Low_complexity 1 21 0 1 1024 486 311 0 0 chr3 57579076 57579182 -102020601 + RSINE1 SINE B4 48 153 -12 1 1024 291 299 20 49 chr3 57579167 57579269 -102020514 - ID_B1 SINE B4 -50 174 76 1 1024 681 95 0 0 chr3 57579331 57579447 -102020336 + (TCTG)n Simple_repeat Simple_repeat 1 116 0 1 1024 536 270 0 31 chr3 57579451 57579581 -102020202 - B1F1 SINE Alu -17 132 7 1 1024 274 255 0 138 chr3 57579498 57579607 -102020176 - MT2B2 LTR ERVL -344 240 147 1 1024 402 306 7 76 chr3 57579581 57579596 -102020187 - ID_B1 SINE B4 -17 207 73 1 1024 23 0 0 0 chr3 57579727 57579750 -102020033 + AT_rich Low_complexity Low_complexity 1 23 0 1 1024 1952 251 15 40 chr3 57579823 57580343 -102019440 - Lx6 LINE L1 -6 7454 6948 1 1024 376 280 153 21 chr3 57580348 57580636 -102019147 + L1ME3A LINE L1 5733 6058 -115 1 1024 451 290 118 75 chr3 57581450 57581782 -102018001 + Kanga1 DNA Tc2 174 519 -1226 1 1024 1190 65 31 62 chr3 57582055 57582250 -102017533 - B2_Mm2 SINE B2 -6 189 1 1 1024 45 34 0 0 chr3 57582253 57582312 -102017471 + AT_rich Low_complexity Low_complexity 1 59 0 1 1024 269 169 17 0 chr3 57582550 57582609 -102017174 + CT-rich Low_complexity Low_complexity 1 60 0 1 1024 259 278 159 0 chr3 57582610 57582736 -102017047 - L1MA4 LINE L1 -364 5936 5791 1 1024 822 39 0 0 chr3 57583733 57583835 -102015948 + (TTTC)n Simple_repeat Simple_repeat 2 103 0 1 1024 198 71 0 0 chr3 57584109 57584137 -102015646 + (CAA)n Simple_repeat Simple_repeat 2 29 0 1 1024 525 237 68 0 chr3 57584142 57584260 -102015523 - B1_Mur3 SINE Alu -23 126 1 1 1024 338 352 51 90 chr3 57584289 57584545 -102015238 - MER57C2 LTR ERV1 -15 419 151 1 1024 619 289 39 28 chr3 57585456 57585634 -102014149 + B3A SINE B2 4 183 -15 1 1024 350 250 73 0 chr3 57586636 57586732 -102013051 - RSINE1 SINE B4 -47 118 16 1 1024 469 262 33 3 chr3 57586732 57586853 -102012930 - B1F1 SINE Alu 0 149 25 1 1024 222 211 115 0 chr3 57586946 57586998 -102012785 - B1_Mus2 SINE Alu -88 59 2 1 1024 435 219 61 0 chr3 57588235 57588317 -102011466 - B1_Mus2 SINE Alu -59 88 2 1 1024 302 264 0 121 chr3 57588236 57588335 -102011448 - MT2B LTR ERVL -362 239 153 1 1024 362 263 8 17 chr3 57588335 57588455 -102011328 - L1_Mur3 LINE L1 -4456 1424 1306 1 1024 355 326 165 71 chr3 57588561 57589191 -102010592 - L1MEc LINE L1 -5441 959 271 1 1024 369 0 0 0 chr3 57589529 57589570 -102010213 + (TAA)n Simple_repeat Simple_repeat 1 41 0 1 1024 2137 120 6 18 chr3 57589971 57590301 -102009482 - ORR1A3 LTR MaLR 0 326 1 1 1024 7229 76 16 4 chr3 57590694 57591792 -102007991 - L1_Mus3 LINE L1 -7 6631 5521 1 1024 274 274 12 12 chr3 57591979 57592064 -102007719 - MIR SINE MIR -32 230 146 1 1024 249 306 50 36 chr3 57592799 57592938 -102006845 - ORR1C2 LTR MaLR -239 145 5 1 1024 374 296 52 7 chr3 57593388 57593541 -102006242 - CR1_Mam LINE CR1 -1251 953 794 1 1024 627 221 87 127 chr3 57594241 57594610 -102005173 - RLTR15 LTR ERVK -5 354 1 1 1024 524 233 45 52 chr3 57594612 57594766 -102005017 + RSINE1 SINE B4 13 165 0 1 1024 181 261 124 52 chr3 57595978 57596075 -102003708 - L2a LINE L2 -1 3425 3322 1 1024 2973 162 92 3 chr3 57596696 57597369 -102002414 - L1_Mur3 LINE L1 -3084 2793 2061 1 1024 465 19 0 0 chr3 57597382 57597436 -102002347 + (TG)n Simple_repeat Simple_repeat 2 55 0 1 1024 545 214 179 49 chr3 57597458 57597743 -102002040 - L1_Mur3 LINE L1 -6507 1221 900 1 1024 4075 196 35 26 chr3 57598355 57599298 -102000485 - RLTR13A2 LTR ERVK 0 958 8 1 1024 503 310 40 35 chr3 57599480 57599654 -102000129 + B4A SINE B4 118 292 0 1 1024 360 0 0 0 chr3 57599684 57599724 -102000059 + (TG)n Simple_repeat Simple_repeat 2 41 0 1 1024 429 316 63 44 chr3 57600495 57600637 -101999146 + RSINE1 SINE B4 4 153 -12 1 1024 306 67 0 0 chr3 57600637 57600682 -101999101 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 1024 429 316 63 44 chr3 57600682 57600698 -101999085 + RSINE1 SINE B4 154 165 0 1 1024 245 111 0 0 chr3 57600780 57600816 -101998967 - B3A SINE B2 -162 36 1 1 1024 583 295 124 10 chr3 57600816 57601022 -101998761 - B4A SINE B4 -62 230 1 1 1024 818 135 7 0 chr3 57601059 57601200 -101998583 + (TTCC)n Simple_repeat Simple_repeat 3 144 0 1 1024 775 199 20 27 chr3 57601220 57601370 -101998413 - B1_Mur4 SINE Alu 0 150 2 1 1024 219 212 146 101 chr3 57601510 57601599 -101998184 - PB1D9 SINE Alu -1 119 27 1 1024 442 80 0 13 chr3 57601680 57601756 -101998027 - L1Md_F2 LINE L1 0 6582 6508 2 1024 2095 308 21 26 chr3 57601759 57602728 -101997055 - Lx9 LINE L1 -6 7467 6484 2 1024 571 239 61 8 chr3 57602730 57602911 -101996872 - Lx9 LINE L1 -1127 6517 6194 2 1024 375 89 0 0 chr3 57602911 57602967 -101996816 + (TG)n Simple_repeat Simple_repeat 2 57 0 2 1024 514 300 109 14 chr3 57602967 57603079 -101996704 - Lx9 LINE L1 -1280 6193 6059 2 1024 572 217 124 17 chr3 57603788 57603966 -101995817 - L1M2 LINE L1 -787 5356 5160 2 1024 189 0 0 0 chr3 57604508 57604529 -101995254 + (TCCA)n Simple_repeat Simple_repeat 4 24 0 2 1024 559 199 68 7 chr3 57604538 57604685 -101995098 - Lx6 LINE L1 -180 7280 7125 2 1024 2048 162 36 8 chr3 57604685 57605046 -101994737 - RLTR14 LTR ERV1 -2 380 10 2 1024 183 80 0 0 chr3 57605106 57605131 -101994652 + (CA)n Simple_repeat Simple_repeat 2 26 0 2 1024 293 119 0 43 chr3 57605131 57605201 -101994582 + GA-rich Low_complexity Low_complexity 2 68 0 2 1024 509 156 43 167 chr3 57605202 57605364 -101994419 - Lx6 LINE L1 -350 7110 6969 2 1024 1899 170 19 75 chr3 57605368 57605781 -101994002 + Lx6 LINE L1 6553 6942 -518 2 1024 191 262 15 19 chr3 57606207 57606274 -101993509 + MIRb SINE MIR 141 210 -58 2 1024 309 122 0 20 chr3 57606550 57606600 -101993183 - B1_Mur2 SINE Alu -2 147 99 2 1024 424 253 0 0 chr3 57607225 57607308 -101992475 + B3A SINE B2 1 83 -115 2 1024 1924 181 121 0 chr3 57607855 57608226 -101991557 - MTD LTR MaLR -3 416 1 2 1024 827 188 49 12 chr3 57609751 57609913 -101989870 + URR1A DNA MER1_type 59 226 0 2 1024 781 235 94 25 chr3 57609942 57610143 -101989640 - B3 SINE B2 -1 215 1 2 1024 655 247 53 16 chr3 57610250 57610439 -101989344 - B3A SINE B2 -1 197 2 2 1024 1342 148 18 9 chr3 57610585 57610803 -101988980 - URR1B DNA MER1_type -5 220 1 2 1024 665 269 73 27 chr3 57611375 57611635 -101988148 - Lx8 LINE L1 -493 6980 6709 2 1024 306 220 0 0 chr3 57611636 57611686 -101988097 - HAL1-3A_ME LINE L1 -834 2024 1975 2 1024 625 299 131 12 chr3 57611750 57611994 -101987789 - B4A SINE B4 -18 274 2 2 1024 1323 257 61 40 chr3 57612010 57612505 -101987278 - Lx8 LINE L1 -773 6700 6196 2 1024 959 291 62 28 chr3 57612690 57613488 -101986295 - Lx8 LINE L1 -393 5910 5045 2 1024 267 103 0 0 chr3 57613595 57613634 -101986149 + (T)n Simple_repeat Simple_repeat 1 39 0 2 1024 259 233 0 0 chr3 57614237 57614310 -101985473 + T-rich Low_complexity Low_complexity 1 73 0 2 1024 574 295 129 21 chr3 57614321 57614515 -101985268 - B4 SINE B4 -76 216 2 2 1024 607 148 189 0 chr3 57614539 57614661 -101985122 + URR1A DNA MER1_type 79 223 -3 2 1024 1048 280 55 28 chr3 57614687 57615146 -101984637 - Lx8 LINE L1 -1113 5030 4560 2 1024 5584 80 12 0 chr3 57615993 57616793 -101982990 - L1_Mm LINE L1 -314 5569 4760 2 1024 4119 59 58 35 chr3 57616799 57617364 -101982419 + L1_Mus2 LINE L1 5983 6560 -6 2 1024 382 301 81 0 chr3 57617515 57617651 -101982132 + RSINE1 SINE B4 3 149 -16 2 1024 288 0 0 0 chr3 57618087 57618119 -101981664 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 2 1024 423 0 0 0 chr3 57618243 57618290 -101981493 + (CA)n Simple_repeat Simple_repeat 2 48 0 2 1024 597 14 0 0 chr3 57618290 57618359 -101981424 + (GA)n Simple_repeat Simple_repeat 2 71 0 2 1024 467 180 11 33 chr3 57618456 57618548 -101981235 - RLTR20A2 LTR ERVK 0 568 479 2 1024 216 0 0 0 chr3 57618548 57618572 -101981211 + (CA)n Simple_repeat Simple_repeat 2 25 0 2 1024 249 33 0 0 chr3 57618573 57618603 -101981180 + (TTTC)n Simple_repeat Simple_repeat 2 31 0 2 1024 1112 84 7 0 chr3 57618605 57618748 -101981035 - B1_Mus1 SINE Alu -3 145 2 2 1024 3063 63 0 0 chr3 57618826 57619221 -101980562 - L1Md_F2 LINE L1 0 6582 6188 2 1024 728 260 69 21 chr3 57619242 57619533 -101980250 - RLTR20A2 LTR ERVK -96 482 178 2 1024 567 0 0 0 chr3 57620297 57620360 -101979423 + (TC)n Simple_repeat Simple_repeat 1 63 0 2 1024 513 0 0 0 chr3 57620360 57620416 -101979367 + (CA)n Simple_repeat Simple_repeat 1 57 0 2 1024 732 218 0 52 chr3 57620932 57621087 -101978696 - B1_Mur3 SINE Alu -2 147 1 2 1024 307 38 38 19 chr3 57621090 57621143 -101978640 + (CAAAA)n Simple_repeat Simple_repeat 2 55 0 2 1024 1638 212 68 144 chr3 57621257 57621902 -101977881 - Lx9 LINE L1 0 7644 7049 2 1024 726 12 0 0 chr3 57621988 57622071 -101977712 + (TTTC)n Simple_repeat Simple_repeat 2 84 0 2 1024 340 211 33 0 chr3 57622590 57622680 -101977103 - L1MB7 LINE L1 -13 6171 6079 2 1024 22 0 0 0 chr3 57623589 57623611 -101976172 + AT_rich Low_complexity Low_complexity 1 22 0 2 1024 688 186 15 44 chr3 57623874 57624005 -101975778 - B3A SINE B2 -52 146 20 2 1024 630 316 52 0 chr3 57624005 57624160 -101975623 + RSINE1 SINE B4 3 165 0 2 1024 25 65 0 0 chr3 57624205 57624251 -101975532 + AT_rich Low_complexity Low_complexity 1 46 0 2 1024 240 253 147 42 chr3 57624917 57625012 -101974771 - MIR SINE MIR -52 210 106 2 1024 601 253 84 31 chr3 57625219 57625399 -101974384 + B3 SINE B2 1 192 -6 2 1024 325 228 35 9 chr3 57625668 57625783 -101974000 - Lx7 LINE L1 0 7696 7579 2 1024 273 156 39 0 chr3 57625816 57625893 -101973890 + (CA)n Simple_repeat Simple_repeat 2 81 0 2 1024 950 186 5 11 chr3 57625893 57626083 -101973700 - Lx7 LINE L1 -337 7359 7171 2 1024 542 282 30 60 chr3 57626155 57626321 -101973462 + RSINE1 SINE B4 3 163 -2 2 1024 187 286 71 0 chr3 57626388 57626444 -101973339 - L2 LINE L2 -535 2884 2825 2 1024 566 242 33 16 chr3 57626494 57626616 -101973167 + B1_Mur1 SINE Alu 23 146 -3 2 1024 1416 266 54 33 chr3 57626629 57627056 -101972727 - RMER15-int LTR ERVL -417 4582 4147 2 1024 263 191 0 0 chr3 57627103 57627150 -101972633 - RMER15-int LTR ERVL -2613 2386 2340 2 1024 944 279 57 4 chr3 57627766 57628047 -101971736 - RMER15-int LTR ERVL -3399 1600 1305 2 1024 632 282 8 0 chr3 57628051 57628182 -101971601 - RSINE1 SINE B4 -32 133 2 2 1024 749 246 62 36 chr3 57628220 57628414 -101971369 - B3 SINE B2 -9 207 9 2 1024 795 296 54 0 chr3 57628459 57628719 -101971064 - RMER15-int LTR ERVL -3773 1226 953 2 1024 760 315 91 43 chr3 57628781 57629176 -101970607 - RMER15-int LTR ERVL -4292 707 294 2 1024 380 335 110 13 chr3 57629192 57629428 -101970355 - RMER15-int LTR ERVL -4740 259 1 2 1024 540 284 207 41 chr3 57629429 57629671 -101970112 - RMER15 LTR ERVL -1 574 293 2 1024 394 160 263 44 chr3 57629884 57630021 -101969762 - ORR1D2 LTR MaLR 0 370 204 2 1024 21 36 0 0 chr3 57630331 57630359 -101969424 + AT_rich Low_complexity Low_complexity 1 28 0 2 1024 1267 98 27 0 chr3 57630634 57630818 -101968965 - B2_Mm2 SINE B2 -5 190 2 2 1024 558 0 0 0 chr3 57632021 57632083 -101967700 + (TTTC)n Simple_repeat Simple_repeat 4 65 0 2 1024 592 240 85 20 chr3 57632717 57632870 -101966913 - B3 SINE B2 -6 210 48 2 1024 354 299 106 78 chr3 57632996 57633279 -101966504 + B4A SINE B4 2 292 0 2 1024 1996 209 28 114 chr3 57633405 57634073 -101965710 - RMER19C LTR ERVK 0 611 1 2 1024 210 310 57 57 chr3 57634223 57634329 -101965454 + PB1D9 SINE Alu 5 110 -10 2 1024 238 216 108 0 chr3 57635416 57635490 -101964293 - MLT1D LTR MaLR -2 503 422 2 1024 194 164 0 18 chr3 57639153 57639209 -101960574 + (TTTG)n Simple_repeat Simple_repeat 1 55 0 2 1024 916 140 7 0 chr3 57639210 57639353 -101960430 - B1_Mur4 SINE Alu -1 149 6 2 1024 1752 244 177 34 chr3 57639389 57640421 -101959362 + Lx8 LINE L1 4693 5905 -1568 2 1024 660 26 0 0 chr3 57640493 57640571 -101959212 + (TG)n Simple_repeat Simple_repeat 2 79 0 2 1024 2530 269 113 11 chr3 57640762 57641710 -101958073 + Lx8 LINE L1 6208 7252 -221 2 1024 343 232 12 0 chr3 57641711 57641793 -101957990 - Lx8 LINE L1 -742 6731 6649 2 1024 325 171 261 0 chr3 57641823 57641911 -101957872 + PB1D9 SINE Alu 1 111 -9 2 1024 1259 96 27 5 chr3 57642455 57642643 -101957140 + B2_Mm2 SINE B2 1 192 -3 2 1024 857 208 104 0 chr3 57643089 57643281 -101956502 - B3 SINE B2 -4 212 1 2 1024 1500 243 169 14 chr3 57643671 57644179 -101955604 - Lx6 LINE L1 -31 7429 6843 2 1024 315 0 0 0 chr3 57644336 57644371 -101955412 + (CA)n Simple_repeat Simple_repeat 2 36 0 2 1024 281 261 0 14 chr3 57645685 57645755 -101954028 + PB1D10 SINE Alu 37 105 -12 2 1024 528 261 114 22 chr3 57647972 57648156 -101951627 - B3 SINE B2 -14 202 2 2 1024 25 0 0 0 chr3 57651061 57651086 -101948697 + GC_rich Low_complexity Low_complexity 1 25 0 2 1024 325 116 29 0 chr3 57651448 57651517 -101948266 + (CGG)n Simple_repeat Simple_repeat 3 73 0 2 1024 200 265 19 29 chr3 57651553 57651658 -101948125 + (CGG)n Simple_repeat Simple_repeat 3 106 0 2 1024 981 133 153 0 chr3 57652363 57652559 -101947224 - URR1A DNA MER1_type 0 226 1 2 1024 1847 163 81 1 chr3 57652880 57652930 -101946853 - ORR1C1 LTR MaLR 0 421 340 2 1024 942 30 8 8 chr3 57652930 57653063 -101946720 - L1Md_T LINE L1 0 6582 6450 2 1024 1847 164 55 49 chr3 57653063 57653384 -101946399 - ORR1C1 LTR MaLR -39 339 1 2 1024 830 202 129 16 chr3 57653632 57653818 -101945965 + B3 SINE B2 2 208 -8 2 1024 578 240 15 15 chr3 57653844 57653918 -101945865 + B1_Mur1 SINE Alu 5 79 -70 2 1024 3428 33 2 10 chr3 57653918 57654321 -101945462 - MTB LTR MaLR 0 400 1 2 1024 578 240 15 15 chr3 57654321 57654377 -101945406 + B1_Mur1 SINE Alu 80 135 -14 2 1024 2392 213 56 4 chr3 57654596 57655058 -101944725 - RLTR18B LTR ERVK -25 487 2 2 1024 392 257 27 45 chr3 57656240 57656350 -101943433 - ID_B1 SINE B4 0 224 117 2 1024 368 272 50 89 chr3 57656429 57656631 -101943152 - L1MEe LINE L1 -3857 997 804 2 1024 371 215 38 0 chr3 57656654 57656733 -101943050 + B1_Mur4 SINE Alu 1 82 -68 2 1024 239 234 125 96 chr3 57656665 57656769 -101943014 + MT2B LTR ERVL 175 281 -320 2 1024 264 240 136 6 chr3 57656769 57657010 -101942773 - L1_Mur3 LINE L1 -1202 4678 4398 2 1024 1364 267 83 58 chr3 57657040 57657909 -101941874 - L1_Mur3 LINE L1 -1659 4221 3331 2 1024 396 0 0 0 chr3 57657909 57657953 -101941830 + (CA)n Simple_repeat Simple_repeat 2 45 0 2 1024 21 36 0 0 chr3 57657954 57657982 -101941801 + AT_rich Low_complexity Low_complexity 1 28 0 2 1024 3785 109 72 0 chr3 57657986 57658554 -101941229 - Lx4A LINE L1 -2 7056 6448 2 1024 27566 104 44 16 chr3 57658557 57661015 -101938768 - Lx4A LINE L1 -751 6307 3816 2 1024 1335 83 5 20 chr3 57661015 57661211 -101938572 - B2_Mm2 SINE B2 0 195 3 2 1024 27566 97 45 19 chr3 57661211 57662856 -101936927 - Lx4A LINE L1 -2062 3815 2060 2 1024 186 43 0 0 chr3 57662856 57662879 -101936904 + (TGG)n Simple_repeat Simple_repeat 1 23 0 2 1024 27566 107 46 11 chr3 57662879 57664465 -101935318 - Lx4A LINE L1 -3818 2059 429 2 1024 835 247 56 36 chr3 57664476 57664925 -101934858 - L1_Mur3 LINE L1 -2555 3325 2868 2 1024 665 305 19 33 chr3 57664934 57665134 -101934649 - B3A SINE B2 -6 189 1 2 1024 1244 304 80 46 chr3 57665219 57666475 -101933308 - L1_Mur3 LINE L1 -3113 2767 1470 2 1024 254 131 0 32 chr3 57666560 57666604 -101933179 + T-rich Low_complexity Low_complexity 22 65 0 2 1024 1109 95 0 0 chr3 57666604 57666752 -101933031 - B1_Mus1 SINE Alu 0 148 1 2 1024 254 131 0 32 chr3 57666752 57666770 -101933013 + T-rich Low_complexity Low_complexity 5 21 0 3 15 33043 61 4 3 chr3 57666938 57672212 -101927571 - L1Md_F2 LINE L1 -2 6580 1302 3 1025 6683 53 5 1 chr3 57672214 57673094 -101926689 - L1Md_F2 LINE L1 0 6582 5700 3 1025 6035 67 3 4 chr3 57673080 57673958 -101925825 - L1Md_F2 LINE L1 -5411 1313 434 3 1025 1304 108 0 25 chr3 57674388 57674588 -101925195 + B2_Mm2 SINE B2 1 195 0 3 1025 423 0 0 0 chr3 57674963 57675010 -101924773 + (TG)n Simple_repeat Simple_repeat 2 48 0 3 1025 777 254 87 35 chr3 57676805 57677151 -101922632 + L1MB3 LINE L1 5659 6022 -161 3 1025 839 268 84 18 chr3 57677163 57677437 -101922346 - RMER15 LTR ERVL -14 561 270 3 1025 908 247 51 74 chr3 57678250 57678635 -101921148 + ORR1D2 LTR MaLR 8 370 0 3 1025 260 219 41 0 chr3 57678666 57678739 -101921044 + L1ME3A LINE L1 5705 5780 -393 3 1025 240 182 18 0 chr3 57678834 57678889 -101920894 + L1ME3A LINE L1 6018 6073 -100 3 1025 540 0 0 0 chr3 57678972 57679032 -101920751 + (TC)n Simple_repeat Simple_repeat 2 61 0 3 1025 224 125 62 0 chr3 57679195 57679259 -101920524 + CT-rich Low_complexity Low_complexity 2 69 0 3 1025 629 232 34 27 chr3 57679386 57679532 -101920251 - B1_Mur2 SINE Alu 0 149 3 3 1025 338 212 106 0 chr3 57679630 57679715 -101920068 + L1MC4a LINE L1 6461 6554 -1328 3 1025 1107 269 120 9 chr3 57679716 57679782 -101920001 + ORR1D2 LTR MaLR 1 69 -301 3 1025 414 0 0 0 chr3 57679782 57679828 -101919955 + (TTTTG)n Simple_repeat Simple_repeat 2 47 0 3 1025 1107 269 120 9 chr3 57679828 57680087 -101919696 + ORR1D2 LTR MaLR 70 360 -10 3 1025 2211 163 38 38 chr3 57680161 57680582 -101919201 - MTC LTR MaLR 0 421 1 3 1025 364 283 9 0 chr3 57680588 57680694 -101919089 + L1MC4a LINE L1 6651 6757 -1125 3 1025 253 281 247 0 chr3 57680723 57680812 -101918971 - PB1D10 SINE Alu -5 112 2 3 1025 320 348 14 49 chr3 57680814 57680886 -101918897 + L1MC4a LINE L1 6739 6811 -1184 3 1025 2477 80 3 30 chr3 57680886 57681222 -101918561 - ORR1A2 LTR MaLR 0 327 1 3 1025 320 348 14 49 chr3 57681222 57681291 -101918492 + L1MC4a LINE L1 6812 6875 -1120 3 1025 244 222 69 20 chr3 57681585 57681686 -101918097 + L1MC4a LINE L1 6895 7000 -785 3 1025 646 185 68 19 chr3 57681854 57682027 -101917756 + B3 SINE B2 15 188 -7 3 1025 276 225 138 0 chr3 57682140 57682220 -101917563 + L1MC4a LINE L1 7355 7445 -550 3 1025 1150 63 0 0 chr3 57682398 57682541 -101917242 + B1_Mm SINE Alu 1 143 -4 3 1025 513 0 0 0 chr3 57682541 57682598 -101917185 + (TAAA)n Simple_repeat Simple_repeat 3 59 0 3 1025 496 287 18 9 chr3 57682729 57682838 -101916945 + RSINE1 SINE B4 5 114 -51 3 1025 303 307 115 27 chr3 57682887 57683148 -101916635 + L1ME3A LINE L1 5880 6163 -10 3 1025 397 298 79 63 chr3 57684099 57684289 -101915494 - MTD LTR MaLR 0 419 227 3 1025 724 238 7 0 chr3 57684375 57684522 -101915261 - B1_Mur1 SINE Alu 0 149 2 3 1025 183 204 0 0 chr3 57684534 57684578 -101915205 + (CA)n Simple_repeat Simple_repeat 1 44 0 3 1025 272 275 94 45 chr3 57684622 57684824 -101914959 - L1MA6 LINE L1 -57 6243 6032 3 1025 465 291 15 7 chr3 57684828 57684963 -101914820 - MLT1B LTR MaLR -254 136 1 3 1025 350 352 7 40 chr3 57685137 57685285 -101914498 + MER5B DNA MER1_type 32 174 -4 3 1025 4273 30 4 2 chr3 57685820 57686324 -101913459 + L1Md_F3 LINE L1 6079 6583 -1 3 1025 633 38 0 0 chr3 57686868 57686948 -101912835 + (TG)n Simple_repeat Simple_repeat 2 81 0 3 1025 213 176 137 0 chr3 57686954 57687005 -101912778 - RSINE1 SINE B4 -104 61 4 3 1025 1056 313 38 40 chr3 57687351 57687771 -101912012 - MTD LTR MaLR 0 419 1 3 1025 7444 77 8 39 chr3 57687880 57687921 -101911862 - RLTR13D5 LTR ERVK 0 1023 1001 3 1025 4284 51 0 0 chr3 57687921 57688435 -101911348 - L1_Mus1 LINE L1 0 6567 6054 3 1025 7444 77 8 39 chr3 57688435 57689449 -101910334 - RLTR13D5 LTR ERVK -23 1000 1 3 1025 522 279 42 14 chr3 57689450 57689592 -101910191 - MTE2b LTR MaLR -11 368 223 3 1025 1164 188 182 117 chr3 57689593 57690021 -101909762 + MT2A LTR ERVL 3 458 -75 3 1025 309 244 0 0 chr3 57690034 57690120 -101909663 + (CA)n Simple_repeat Simple_repeat 2 87 0 3 1025 559 303 91 15 chr3 57690126 57690357 -101909426 - MTE2b LTR MaLR -128 251 7 3 1025 355 229 22 139 chr3 57690645 57690782 -101909001 - MTEa LTR MaLR -254 125 5 3 1025 275 246 71 30 chr3 57691112 57691309 -101908474 - L1MEf LINE L1 -4731 2371 2167 3 1025 310 298 21 31 chr3 57691354 57691451 -101908332 - L1MEf LINE L1 -5075 2027 1932 3 1025 669 247 120 11 chr3 57691604 57691788 -101907995 + B3 SINE B2 1 204 -12 3 1025 465 281 150 29 chr3 57691800 57692180 -101907603 - L1MEf LINE L1 -5150 1952 1364 3 1025 719 280 5 35 chr3 57692185 57692371 -101907412 + B3A SINE B2 3 186 -12 3 1025 246 62 0 0 chr3 57692371 57692403 -101907380 + (CA)n Simple_repeat Simple_repeat 1 32 0 3 1025 719 280 5 35 chr3 57692403 57692416 -101907367 + B3A SINE B2 187 196 -2 3 1025 190 73 0 47 chr3 57692747 57692790 -101906993 + (TTTTTG)n Simple_repeat Simple_repeat 1 41 0 3 1025 7607 139 4 12 chr3 57692934 57695021 -101904762 - Lx LINE L1 0 6654 4581 3 1025 1881 149 12 5 chr3 57695020 57695384 -101904399 + L1_Mur2 LINE L1 4020 4384 -1463 3 1025 231 357 29 0 chr3 57695903 57695973 -101903810 - ID4 SINE ID -6 77 6 3 1025 465 19 0 0 chr3 57696454 57696508 -101903275 + (CA)n Simple_repeat Simple_repeat 2 55 0 3 1025 575 203 66 33 chr3 57696789 57696911 -101902872 + MT2B LTR ERVL 1 126 -407 3 1025 689 262 154 85 chr3 57696906 57697189 -101902594 + MT2B LTR ERVL 249 537 -64 3 1025 387 0 0 0 chr3 57697189 57697232 -101902551 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 1025 689 262 154 85 chr3 57697232 57697278 -101902505 + MT2B LTR ERVL 538 600 -1 3 1025 1962 201 3 13 chr3 57697439 57697823 -101901960 + RLTR14 LTR ERV1 3 382 0 3 1025 749 121 105 0 chr3 57698077 57698201 -101901582 - MTC LTR MaLR -284 137 1 3 1025 1646 300 68 84 chr3 57698350 57700051 -101899732 + L1_Mur3 LINE L1 2093 3766 -2114 3 1025 375 305 30 38 chr3 57700075 57700208 -101899575 - MTEb LTR MaLR -105 274 143 3 1025 436 263 26 0 chr3 57700212 57700326 -101899457 - ORR1D2 LTR MaLR -8 362 246 3 1025 252 0 0 0 chr3 57700339 57700367 -101899416 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 3 1025 1891 179 19 5 chr3 57700463 57700833 -101898950 + Lx7 LINE L1 6831 7205 -491 3 1025 582 181 0 0 chr3 57700833 57700977 -101898806 + (CA)n Simple_repeat Simple_repeat 1 144 0 3 1025 378 212 113 96 chr3 57700984 57701338 -101898445 + Lx7 LINE L1 7215 7574 -122 3 1025 315 130 0 0 chr3 57701607 57701661 -101898122 + (TTG)n Simple_repeat Simple_repeat 1 54 0 3 1025 702 128 0 0 chr3 57701818 57701935 -101897848 + (CA)n Simple_repeat Simple_repeat 2 118 0 3 1025 477 234 22 0 chr3 57701972 57702249 -101897534 + (CA)n Simple_repeat Simple_repeat 1 283 0 3 1025 317 179 38 25 chr3 57702268 57702348 -101897435 + (CATATA)n Simple_repeat Simple_repeat 6 86 0 3 1025 657 137 22 22 chr3 57702351 57702530 -101897253 + (CA)n Simple_repeat Simple_repeat 1 179 0 3 1025 285 51 0 0 chr3 57702563 57702602 -101897181 + (CA)n Simple_repeat Simple_repeat 1 39 0 3 1025 1996 215 98 22 chr3 57703459 57704049 -101895734 - RCHARR1 DNA MER1_type -39 935 301 3 1025 5882 130 41 29 chr3 57704094 57705537 -101894246 + Lx LINE L1 5217 6651 -3 3 1025 349 312 54 8 chr3 57705570 57705699 -101894084 - RCHARR1 DNA MER1_type -731 243 109 3 1025 663 272 11 21 chr3 57705802 57705984 -101893799 - B3A SINE B2 -14 181 12 3 1025 181 310 103 0 chr3 57706234 57706292 -101893491 - L2 LINE L2 -3281 138 75 3 1025 303 277 0 0 chr3 57706404 57706469 -101893314 + B4A SINE B4 5 69 -223 3 1025 3339 125 211 119 chr3 57706481 57707336 -101892447 - ORR1A4-int LTR MaLR -42 1921 989 3 1025 641 123 0 88 chr3 57707322 57707447 -101892336 - MT2B LTR ERVL -478 123 10 3 1025 4036 140 38 4 chr3 57707355 57708037 -101891746 - ORR1A4-int LTR MaLR -1258 705 1 3 1025 1447 96 15 0 chr3 57708037 57708236 -101891547 - ORR1A4 LTR MaLR 0 329 128 3 1025 644 296 105 5 chr3 57708225 57708415 -101891368 + B4A SINE B4 41 249 -43 3 1025 1352 265 102 22 chr3 57708412 57708874 -101890909 - RMER5 LTR ERV1 -15 519 21 3 1025 770 125 0 7 chr3 57708976 57709121 -101890662 + (GA)n Simple_repeat Simple_repeat 1 144 0 3 1025 513 72 14 0 chr3 57709748 57709817 -101889966 + B2_Mm1t SINE B2 2 71 -122 3 1025 425 274 124 0 chr3 57709815 57709928 -101889855 - RSINE1 SINE B4 -32 133 7 3 1025 1068 148 145 20 chr3 57710190 57710390 -101889393 - URR1B DNA MER1_type 0 225 1 3 1025 749 236 5 5 chr3 57710938 57711130 -101888653 + L1_Mur3 LINE L1 872 1063 -6649 3 1025 1842 140 30 6 chr3 57711150 57711487 -101888296 + Lx6 LINE L1 5587 5931 -1529 3 1025 1560 273 68 12 chr3 57711481 57712217 -101887566 + Lx6 LINE L1 6479 7434 -26 3 1025 427 329 81 0 chr3 57712409 57712558 -101887225 - MER58B DNA MER1_type -172 169 9 3 1025 237 33 0 0 chr3 57713331 57713361 -101886422 + (CA)n Simple_repeat Simple_repeat 2 31 0 3 1025 259 222 0 0 chr3 57713361 57713406 -101886377 - PB1D10 SINE Alu -6 111 67 3 1025 238 327 35 52 chr3 57713553 57713669 -101886114 + ORSL DNA Tip100 162 275 0 3 1025 1004 181 0 146 chr3 57713724 57713970 -101885813 - B3 SINE B2 -5 211 2 3 1025 425 315 34 20 chr3 57713996 57714142 -101885641 - MLT1A1 LTR MaLR 0 408 261 3 1025 234 212 30 15 chr3 57714203 57714270 -101885513 + CT-rich Low_complexity Low_complexity 1 68 0 3 1025 996 271 9 9 chr3 57714323 57714535 -101885248 - B4 SINE B4 -79 213 2 3 1025 306 221 93 28 chr3 57715741 57715848 -101883935 + MER112 DNA MER1_type 148 261 0 3 1025 240 35 0 0 chr3 57716044 57716073 -101883710 + (TGGGGG)n Simple_repeat Simple_repeat 1 29 0 3 1025 188 34 0 33 chr3 57716478 57716508 -101883275 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 3 1025 275 250 0 0 chr3 57717752 57717804 -101881979 - URR1B DNA MER1_type -173 52 1 3 1025 5151 108 12 8 chr3 57717974 57718708 -101881075 + RMER19A LTR ERVK 1 737 0 3 1025 512 287 71 67 chr3 57718784 57719038 -101880745 + RMER2 LTR ERV1 290 544 -23 3 1025 23 0 0 0 chr3 57719161 57719184 -101880599 + AT_rich Low_complexity Low_complexity 1 23 0 3 1025 326 127 14 0 chr3 57719458 57719529 -101880254 + (TTA)n Simple_repeat Simple_repeat 2 73 0 3 1025 236 250 81 81 chr3 57719679 57719766 -101880017 + MER5B DNA MER1_type 91 177 -1 3 1025 3150 53 5 10 chr3 57719921 57720319 -101879464 - MTA_Mm LTR MaLR 0 396 1 3 1025 6827 55 5 2 chr3 57720441 57721336 -101878447 - L1_Mus1 LINE L1 0 6567 5671 3 1025 461 291 46 0 chr3 57722002 57722124 -101877659 - B1F SINE Alu -7 142 16 3 1025 537 312 0 6 chr3 57722124 57722301 -101877482 + (TG)n Simple_repeat Simple_repeat 1 176 0 3 1025 261 264 0 0 chr3 57722326 57722436 -101877347 + (TG)n Simple_repeat Simple_repeat 2 111 0 3 1025 255 293 0 0 chr3 57722528 57722685 -101877098 + (TG)n Simple_repeat Simple_repeat 2 158 0 3 1025 586 186 17 26 chr3 57722792 57722908 -101876875 - ID_B1 SINE B4 -6 218 104 3 1025 353 255 71 0 chr3 57726011 57726109 -101873674 - U6 snRNA snRNA -2 105 1 3 1025 453 36 0 0 chr3 57726166 57726221 -101873562 + (TG)n Simple_repeat Simple_repeat 2 56 0 3 1025 408 247 71 0 chr3 57726221 57726306 -101873477 - RSINE1 SINE B4 -41 124 34 4 1025 991 230 102 48 chr3 57727423 57727757 -101872026 - ORR1E LTR MaLR 0 359 8 4 1025 914 286 45 64 chr3 57727859 57728330 -101871453 + LTR37B LTR ERV1 6 467 -1 4 1025 224 77 0 25 chr3 57728610 57728650 -101871133 + (CACCC)n Simple_repeat Simple_repeat 5 43 0 4 1025 422 196 0 30 chr3 57729143 57729243 -101870540 - MTD LTR MaLR -322 97 1 4 1025 2561 217 32 132 chr3 57729267 57730307 -101869476 - MTD-int LTR MaLR -451 807 19 4 1025 1608 213 72 8 chr3 57730314 57730674 -101869109 - MTD LTR MaLR -2 417 35 4 1025 1045 169 63 55 chr3 57730696 57730934 -101868849 + RMER19B LTR ERVK 310 549 -353 4 1025 450 0 0 0 chr3 57730936 57730986 -101868797 + (CA)n Simple_repeat Simple_repeat 2 51 0 4 1025 667 234 109 47 chr3 57731008 57731282 -101868501 + L1M2 LINE L1 4414 4704 -1439 4 1025 300 38 0 70 chr3 57731282 57731339 -101868444 + (CAAAA)n Simple_repeat Simple_repeat 4 56 0 4 1025 644 321 102 19 chr3 57731349 57732053 -101867730 + L1M2 LINE L1 4678 5391 -456 4 1025 205 29 0 56 chr3 57732065 57732101 -101867682 + (GTTTG)n Simple_repeat Simple_repeat 2 35 0 4 1025 848 39 87 0 chr3 57732101 57732219 -101867564 - B1_Mm SINE Alu -8 139 11 4 1025 462 225 41 110 chr3 57732221 57732366 -101867417 + L1_Mur3 LINE L1 5411 5545 -335 4 1025 554 292 91 20 chr3 57732363 57732989 -101866794 + L1M4 LINE L1 2772 3460 -2686 4 1025 8775 25 0 0 chr3 57732992 57734193 -101865590 - L1Md_T LINE L1 0 6582 5382 4 1025 652 253 42 101 chr3 57734309 57734665 -101865118 + L1M4 LINE L1 3596 3930 -2216 4 1025 495 178 59 0 chr3 57734673 57734774 -101865009 + Lx9 LINE L1 7371 7477 -167 4 1025 180 111 0 0 chr3 57734779 57734806 -101864977 + (TATG)n Simple_repeat Simple_repeat 4 30 0 4 1025 278 150 0 0 chr3 57735104 57735144 -101864639 - Ricksha_c DNA MuDR -1140 908 869 4 1025 366 42 0 0 chr3 57735146 57735194 -101864589 + (TG)n Simple_repeat Simple_repeat 1 48 0 4 1025 679 291 90 39 chr3 57735292 57735571 -101864212 - MT2A LTR ERVL -84 449 157 4 1025 366 264 11 0 chr3 57735886 57735977 -101863806 + B4A SINE B4 192 283 -9 4 1025 186 43 0 0 chr3 57735987 57736010 -101863773 + (CA)n Simple_repeat Simple_repeat 2 24 0 4 1025 2417 194 41 25 chr3 57736443 57736928 -101862855 + Lx2B LINE L1 6501 6993 -7 4 1025 470 31 0 15 chr3 57737488 57737553 -101862230 + (TTA)n Simple_repeat Simple_repeat 2 65 0 4 1025 436 182 0 22 chr3 57738146 57738236 -101861547 - RLTR14 LTR ERV1 -3 379 292 4 1025 263 75 0 24 chr3 57738315 57738356 -101861427 - RLTR14 LTR ERV1 -104 278 239 4 1025 528 16 0 0 chr3 57738356 57738417 -101861366 + (GA)n Simple_repeat Simple_repeat 2 62 0 4 1025 1347 72 0 0 chr3 57738438 57738618 -101861165 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 4 1025 1921 151 70 0 chr3 57738773 57739118 -101860665 - MTC LTR MaLR -21 400 32 4 1025 255 304 148 4 chr3 57739587 57739737 -101860046 + MIR SINE MIR 2 170 -98 4 1025 395 311 9 0 chr3 57739740 57739846 -101859937 + ID_B1 SINE B4 6 112 -112 4 1025 914 272 73 62 chr3 57740380 57740737 -101859046 - MTEa LTR MaLR -9 370 10 4 1025 195 289 135 0 chr3 57740746 57740850 -101858933 - MIRc SINE MIR -45 223 106 4 1025 450 259 35 9 chr3 57741274 57741387 -101858396 + PB1D10 SINE Alu 1 116 -1 4 1025 908 244 39 5 chr3 57741540 57741746 -101858037 - B3 SINE B2 -3 213 1 4 1025 1728 200 52 25 chr3 57742101 57742501 -101857282 - MTD LTR MaLR -8 411 1 4 1025 573 138 17 17 chr3 57743135 57743253 -101856530 + GA-rich Low_complexity Low_complexity 3 120 0 4 1025 600 81 11 0 chr3 57744791 57744871 -101854912 + MTB_Mm LTR MaLR 1 81 -326 4 1025 4486 168 49 19 chr3 57744871 57745732 -101854051 + RMER13B LTR ERVK 1 896 -12 4 1025 2946 36 0 0 chr3 57745732 57746064 -101853719 + IAPEY3_LTR LTR ERVK 1 332 0 4 1025 4486 168 49 19 chr3 57746064 57746084 -101853699 + RMER13B LTR ERVK 897 908 0 4 1025 2352 64 6 15 chr3 57746087 57746421 -101853362 + MTB_Mm LTR MaLR 77 407 0 4 1025 1558 109 53 23 chr3 57746485 57746748 -101853035 + MTC LTR MaLR 15 285 -136 4 1025 262 173 77 0 chr3 57746740 57746792 -101852991 - RLTR18 LTR ERVK -6 610 555 4 1025 946 131 7 7 chr3 57747112 57747393 -101852390 + (GGA)n Simple_repeat Simple_repeat 1 281 0 4 1025 1255 178 16 20 chr3 57747394 57747640 -101852143 - RLTR18 LTR ERVK -65 551 307 4 1025 891 147 91 14 chr3 57747639 57747860 -101851923 + MTC-int LTR MaLR 1021 1258 0 4 1025 811 190 358 3 chr3 57747860 57748171 -101851612 + MTC LTR MaLR 1 421 0 4 1025 330 242 74 0 chr3 57748235 57748330 -101851453 + MT2A LTR ERVL 94 195 -338 4 1025 241 188 250 0 chr3 57748314 57748394 -101851389 + MT2A LTR ERVL 356 455 -78 4 1025 351 0 0 0 chr3 57748403 57748442 -101851341 + (CA)n Simple_repeat Simple_repeat 2 40 0 4 1025 352 284 0 19 chr3 57749402 57749506 -101850277 - Charlie2a DNA MER1_type -11 2850 2749 4 1025 375 335 67 30 chr3 57749511 57749779 -101850004 - Charlie2a DNA MER1_type -1855 1006 729 4 1025 232 288 62 0 chr3 57749773 57749853 -101849930 - Charlie2a DNA MER1_type -2387 474 390 4 1025 660 118 50 8 chr3 57750402 57750522 -101849261 + MTD LTR MaLR 7 131 -288 4 1025 954 185 26 22 chr3 57750594 57750826 -101848957 + RMER3D-int LTR ERVK 2605 2837 -5 4 1025 2150 200 119 51 chr3 57750831 57751479 -101848304 + RLTR17 LTR ERVK 1 692 0 4 1025 1365 201 40 7 chr3 57751482 57751757 -101848026 + MTD LTR MaLR 129 412 -7 4 1025 1637 232 75 73 chr3 57753506 57754012 -101845771 + RLTR18B LTR ERVK 1 507 -5 4 1025 234 0 0 0 chr3 57754014 57754040 -101845743 + (TC)n Simple_repeat Simple_repeat 1 26 0 4 1025 438 108 0 0 chr3 57754040 57754104 -101845679 + (CA)n Simple_repeat Simple_repeat 1 65 0 4 1025 216 241 0 0 chr3 57755861 57755919 -101843864 + (TA)n Simple_repeat Simple_repeat 2 59 0 4 1025 507 341 25 112 chr3 57755924 57756244 -101843539 - B4A SINE B4 0 292 1 4 1025 567 231 58 106 chr3 57757563 57757771 -101842012 - B3A SINE B2 0 198 1 4 1025 1448 173 37 1 chr3 57758122 57758426 -101841357 - RLTR31A_Mm LTR ERVK -178 375 1 4 1025 1257 104 11 6 chr3 57760713 57760896 -101838887 - B2_Mm2 SINE B2 -10 185 2 4 1025 294 29 0 0 chr3 57761199 57761234 -101838549 + (TG)n Simple_repeat Simple_repeat 2 36 0 4 1025 1969 120 170 57 chr3 57762263 57762686 -101837097 - RLTR31B_Mm LTR ERVK -86 471 1 4 1025 2233 98 6 0 chr3 57762687 57763005 -101836778 + ORR1A2 LTR MaLR 8 327 0 4 1025 408 125 0 0 chr3 57764462 57764526 -101835257 + (CAT)n Simple_repeat Simple_repeat 3 66 0 4 1025 2959 267 68 24 chr3 57764678 57765155 -101834628 - Lx8 LINE L1 0 7473 6953 4 1025 441 0 0 0 chr3 57765155 57765204 -101834579 + (TG)n Simple_repeat Simple_repeat 1 49 0 4 1025 2959 267 68 24 chr3 57765204 57765633 -101834150 - Lx8 LINE L1 -521 6952 6527 4 1025 231 218 0 0 chr3 57767496 57767551 -101832232 + T-rich Low_complexity Low_complexity 1 55 0 4 1025 2604 204 65 15 chr3 57768106 57768643 -101831140 - Lx9 LINE L1 -697 6947 6384 4 1025 249 303 34 0 chr3 57769528 57769617 -101830166 - L1ME1 LINE L1 -257 5922 5831 4 1025 335 300 55 0 chr3 57769996 57770106 -101829677 - Tigger5 DNA MER2_type 0 2406 2291 4 1025 271 369 19 10 chr3 57770129 57770233 -101829550 - Tigger5 DNA MER2_type -2190 216 112 4 1025 692 207 210 11 chr3 57771655 57771831 -101827952 + B3 SINE B2 2 212 -4 4 1025 236 221 0 93 chr3 57772768 57772843 -101826940 - RSINE1 SINE B4 0 165 98 4 1025 326 281 42 42 chr3 57773048 57773167 -101826616 - MIRb SINE MIR -30 232 114 4 1025 688 175 8 8 chr3 57773253 57773374 -101826409 - B1_Mus1 SINE Alu 0 148 28 4 1025 240 394 25 15 chr3 57773589 57773790 -101825993 + MIR SINE MIR 31 233 -29 4 1025 305 250 82 52 chr3 57774081 57774178 -101825605 + MLT1H2 LTR MaLR 370 469 -20 4 1025 233 286 32 0 chr3 57774533 57774596 -101825187 + CT-rich Low_complexity Low_complexity 1 65 0 4 1025 854 151 0 48 chr3 57774597 57774743 -101825040 - B1_Mus1 SINE Alu -8 140 2 4 1025 1336 12 6 0 chr3 57774816 57775003 -101824780 + L1Md_A LINE L1 6422 6582 0 4 1025 297 325 69 75 chr3 57775464 57775810 -101823973 - MamRep4096 DNA hAT? -4 422 79 4 1025 246 240 187 32 chr3 57776755 57776910 -101822873 + ORSL-2a DNA Tip100 73 251 -91 4 1025 201 39 0 0 chr3 57778679 57778705 -101821078 + (TG)n Simple_repeat Simple_repeat 1 26 0 4 1025 594 0 0 0 chr3 57779041 57779107 -101820676 + (TCTCTG)n Simple_repeat Simple_repeat 1 66 0 4 1025 384 188 22 45 chr3 57779157 57779246 -101820537 - PB1D10 SINE Alu -5 112 26 4 1025 909 268 53 5 chr3 57779360 57779566 -101820217 - B3 SINE B2 0 216 1 4 1025 553 241 71 0 chr3 57779636 57779748 -101820035 - PB1D7 SINE Alu 0 120 1 4 1025 184 398 60 0 chr3 57780129 57780212 -101819571 + MIR SINE MIR 49 136 -72 4 1025 30 89 0 0 chr3 57781155 57781234 -101818549 + AT_rich Low_complexity Low_complexity 1 79 0 4 1025 278 252 71 88 chr3 57781305 57781418 -101818365 + MTEb LTR MaLR 256 366 -13 4 1025 448 278 93 14 chr3 57781426 57781641 -101818142 + L1M5 LINE L1 5254 5485 -688 4 1025 261 0 0 0 chr3 57781667 57781696 -101818087 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 4 1025 425 293 101 121 chr3 57782082 57782645 -101817138 - HAL1 LINE L1 -1173 1334 783 4 1025 379 365 19 25 chr3 57783646 57783806 -101815977 + MER5B DNA MER1_type 15 173 -5 4 1025 529 182 20 108 chr3 57785125 57785218 -101814565 + ORR1C2 LTR MaLR 1 80 -304 4 1025 3123 146 74 2 chr3 57785218 57785748 -101814035 + RLTR20D LTR ERVK 1 568 0 4 1025 1245 171 84 62 chr3 57785748 57786021 -101813762 + ORR1C2 LTR MaLR 99 377 -7 4 1025 284 196 73 42 chr3 57786512 57786608 -101813175 - LTR33 LTR ERVL -51 464 366 4 1025 182 277 44 44 chr3 57787690 57787758 -101812025 - MER5B DNA MER1_type -110 68 1 4 1025 1800 122 108 45 chr3 57787866 57788200 -101811583 + ORR1B2 LTR MaLR 5 359 -8 4 1025 894 192 7 7 chr3 57788753 57788900 -101810883 + B1_Mur4 SINE Alu 2 148 -2 4 1025 187 29 86 0 chr3 57788929 57788964 -101810819 + (CAAA)n Simple_repeat Simple_repeat 4 41 0 4 1025 1971 153 73 14 chr3 57789275 57789633 -101810150 + MTC LTR MaLR 3 381 -40 4 1025 666 134 0 36 chr3 57789633 57789772 -101810011 + CT-rich Low_complexity Low_complexity 2 135 0 4 1025 241 281 0 35 chr3 57789786 57789871 -101809912 + CT-rich Low_complexity Low_complexity 2 83 0 4 1025 843 64 0 0 chr3 57790207 57790317 -101809466 + (GAA)n Simple_repeat Simple_repeat 1 110 0 4 1025 1462 181 41 55 chr3 57790317 57790450 -101809333 - RMER17C LTR ERVK -52 358 212 5 1025 507 33 0 0 chr3 57790450 57790511 -101809272 + (GA)n Simple_repeat Simple_repeat 1 61 0 5 1025 1462 181 41 55 chr3 57790511 57790740 -101809043 - RMER17C LTR ERVK -199 211 2 5 1025 2345 103 9 6 chr3 57790740 57791073 -101808710 - RMER17C-int LTR ERVK 0 3238 2905 5 1025 1584 103 146 147 chr3 57791068 57791203 -101808580 - RMER17C-int LTR ERVK -511 2727 2603 5 1025 281 226 0 19 chr3 57791203 57791257 -101808526 + LSU-rRNA_Hsa rRNA rRNA 4198 4250 -785 5 1025 1584 103 146 147 chr3 57791257 57791553 -101808230 - RMER17C-int LTR ERVK -511 2602 2327 5 1025 1632 76 0 9 chr3 57791551 57791764 -101808019 - RMER17C-int LTR ERVK -1259 1979 1769 5 1025 405 0 0 0 chr3 57791767 57791812 -101807971 + (TA)n Simple_repeat Simple_repeat 2 46 0 5 1025 284 29 0 0 chr3 57791813 57791847 -101807936 - RMER17C-int LTR ERVK -1867 1371 1338 5 1025 2788 194 89 89 chr3 57792249 57793200 -101806583 - RMER17C-int LTR ERVK -2287 951 1 5 1025 633 238 104 46 chr3 57793639 57793899 -101805884 - RMER17C-int LTR ERVK 0 3238 2964 5 1025 285 239 143 27 chr3 57793912 57794024 -101805759 - RMER17C-int LTR ERVK -363 2875 2751 5 1025 399 68 0 0 chr3 57794025 57794084 -101805699 + (CAGAGA)n Simple_repeat Simple_repeat 2 60 0 5 1025 884 215 103 106 chr3 57794114 57794520 -101805263 - RLTR19-int LTR ERVK -2171 3966 3562 5 1025 304 225 62 12 chr3 57794620 57794701 -101805082 - RLTR19-int LTR ERVK -2864 3273 3189 5 1025 2246 144 60 23 chr3 57794853 57795076 -101804707 + RMER10B LTR ERVL 1 227 -171 5 1025 567 0 0 0 chr3 57795076 57795139 -101804644 + (TC)n Simple_repeat Simple_repeat 1 63 0 5 1025 2246 144 60 23 chr3 57795139 57795299 -101804484 + RMER10B LTR ERVL 228 398 0 5 1025 787 198 130 77 chr3 57795393 57795678 -101804105 + RLTR19-int LTR ERVK 2708 3007 -3130 5 1025 347 145 143 14 chr3 57795688 57795758 -101804025 + RLTR19-int LTR ERVK 3199 3277 -2860 5 1025 401 169 0 12 chr3 57795788 57795872 -101803911 + CT-rich Low_complexity Low_complexity 3 85 0 5 1025 577 168 87 56 chr3 57795874 57796000 -101803783 + RMER1C Other Other 1203 1332 -10 5 1025 1165 225 62 46 chr3 57796035 57796342 -101803441 - RodERV21-int LTR ERV1 -4669 322 11 5 1025 23 0 0 0 chr3 57796674 57796697 -101803086 + AT_rich Low_complexity Low_complexity 1 23 0 5 1025 564 317 56 17 chr3 57797693 57797927 -101801856 + MLT1A1 LTR MaLR 3 245 -163 5 1025 2239 261 130 40 chr3 57797944 57798727 -101801056 - Lx8 LINE L1 -1 7472 6619 5 1025 456 360 1 7 chr3 57798730 57798931 -101800852 + MLT1A1 LTR MaLR 167 408 0 5 1025 1780 149 254 11 chr3 57798989 57799348 -101800435 - RLTR41 LTR ERV1 0 446 1 5 1025 410 252 74 28 chr3 57799428 57799697 -101800086 - L1M2 LINE L1 -689 5482 5199 5 1025 441 36 0 0 chr3 57799705 57799760 -101800023 + (TG)n Simple_repeat Simple_repeat 1 55 0 5 1025 607 281 92 108 chr3 57799782 57800077 -101799706 - B4 SINE B4 0 292 3 5 1025 412 239 92 25 chr3 57800139 57800302 -101799481 - L1M2 LINE L1 -1835 4308 4135 5 1025 299 271 30 50 chr3 57800309 57800410 -101799373 - MIRc SINE MIR -114 154 56 5 1025 225 260 25 25 chr3 57800869 57800948 -101798835 + CT-rich Low_complexity Low_complexity 3 81 0 5 1025 4154 44 0 0 chr3 57800960 57801457 -101798326 - L1_Mm LINE L1 -679 5204 4708 5 1025 23 33 0 0 chr3 57801580 57801610 -101798173 + AT_rich Low_complexity Low_complexity 1 30 0 5 1025 239 133 0 22 chr3 57801944 57801990 -101797793 + GA-rich Low_complexity Low_complexity 2 46 0 5 1025 486 0 0 0 chr3 57802279 57802333 -101797450 + (TC)n Simple_repeat Simple_repeat 2 55 0 5 1026 235 193 35 0 chr3 57803289 57803346 -101796437 - MER20B DNA MER1_type -27 756 698 5 1026 718 215 87 6 chr3 57803379 57803552 -101796231 + B3 SINE B2 24 210 -6 5 1026 493 270 32 58 chr3 57804025 57804214 -101795569 + RLTR23 LTR ERV1 247 430 0 5 1026 884 188 0 7 chr3 57804322 57804467 -101795316 - B1_Mur4 SINE Alu 0 150 7 5 1026 300 336 111 68 chr3 57804693 57805044 -101794739 - MER20B DNA MER1_type -354 429 64 5 1026 263 262 23 23 chr3 57805474 57805560 -101794223 - Charlie8 DNA MER1_type -2258 170 85 5 1026 520 14 29 0 chr3 57806278 57806347 -101793436 + (TTTC)n Simple_repeat Simple_repeat 2 72 0 5 1026 398 239 163 0 chr3 57806564 57806681 -101793102 - B1_Mus1 SINE Alu -14 135 1 5 1026 667 282 59 0 chr3 57806706 57806876 -101792907 - B3A SINE B2 -18 180 1 5 1026 208 211 0 0 chr3 57807645 57807683 -101792100 + (CCTG)n Simple_repeat Simple_repeat 2 39 0 5 1026 723 82 56 6 chr3 57807698 57807858 -101791925 + (TCTA)n Simple_repeat Simple_repeat 4 171 0 5 1026 180 0 0 0 chr3 57807880 57807900 -101791883 + (TATG)n Simple_repeat Simple_repeat 2 21 0 5 1026 198 103 0 0 chr3 57807901 57807930 -101791853 + (CAT)n Simple_repeat Simple_repeat 1 29 0 5 1026 338 287 149 0 chr3 57808197 57808291 -101791492 + PB1D10 SINE Alu 2 109 -8 5 1026 359 165 0 35 chr3 57808576 57808689 -101791094 + (TA)n Simple_repeat Simple_repeat 1 109 0 5 1026 1115 242 41 35 chr3 57809169 57809486 -101790297 - L1MC1 LINE L1 -1 6332 6014 5 1026 758 120 8 0 chr3 57809618 57809743 -101790040 + (TC)n Simple_repeat Simple_repeat 1 126 0 5 1026 213 39 0 0 chr3 57809745 57809771 -101790012 + (TTCC)n Simple_repeat Simple_repeat 3 28 0 5 1026 530 294 39 4 chr3 57809774 57810006 -101789777 - L1MC1 LINE L1 -518 5815 5576 5 1026 386 169 17 17 chr3 57810112 57810232 -101789551 + (TA)n Simple_repeat Simple_repeat 1 120 0 5 1026 38719 39 7 27 chr3 57810490 57816858 -101782925 - L1Md_T LINE L1 0 6582 417 5 1026 2005 209 22 48 chr3 57817388 57818186 -101781597 + L1_Mur3 LINE L1 913 1678 -4199 5 1026 13056 156 11 14 chr3 57818181 57819796 -101779987 + Lx2 LINE L1 3673 5301 -582 5 1026 1241 75 0 0 chr3 57819796 57819943 -101779840 + B1_Mus2 SINE Alu 1 147 0 5 1026 13056 126 11 9 chr3 57819943 57821235 -101778548 + Lx2 LINE L1 5302 6575 -422 5 1026 6024 169 26 133 chr3 57821234 57822795 -101776988 + L1_Mur3 LINE L1 3861 5253 -627 5 1026 635 234 0 0 chr3 57822796 57822907 -101776876 - B1_Mur2 SINE Alu -31 118 8 5 1026 465 213 0 77 chr3 57823485 57823602 -101776181 + RMER30 DNA MER1_type 38 145 -57 5 1026 405 0 0 0 chr3 57823618 57823663 -101776120 + (TTTTG)n Simple_repeat Simple_repeat 3 47 0 5 1026 1196 214 174 9 chr3 57823663 57824007 -101775776 + MTD LTR MaLR 19 419 0 5 1026 1358 237 43 31 chr3 57824169 57824518 -101775265 - ORR1D-int LTR MaLR -824 546 194 5 1026 1447 249 52 104 chr3 57824498 57825179 -101774604 + RMER13B LTR ERVK 320 898 -10 5 1026 232 237 16 33 chr3 57825229 57825290 -101774493 - LTRIS_Mus LTR ERV1 -48 539 480 5 1026 189 74 0 0 chr3 57825344 57825371 -101774412 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 5 1026 425 227 99 30 chr3 57825965 57826138 -101773645 - L1M2 LINE L1 -1370 4773 4555 5 1026 1082 267 215 9 chr3 57826241 57826585 -101773198 - MTD LTR MaLR -4 415 1 5 1026 532 225 33 14 chr3 57826655 57826822 -101772961 - L1MCa LINE L1 -2371 5589 5421 5 1026 581 253 113 5 chr3 57827369 57827591 -101772192 - L1MCa LINE L1 -3132 3189 2944 5 1026 440 77 15 0 chr3 57827597 57827662 -101772121 + (TG)n Simple_repeat Simple_repeat 2 67 0 5 1026 650 265 78 65 chr3 57827662 57827885 -101771898 - B4A SINE B4 -20 272 47 5 1026 1173 267 102 29 chr3 57827907 57828396 -101771387 - L1MCa LINE L1 -3370 2951 2427 5 1026 216 0 0 0 chr3 57829939 57829963 -101769820 + (A)n Simple_repeat Simple_repeat 1 24 0 5 1026 479 285 89 115 chr3 57829995 57830411 -101769372 - L1MCa LINE L1 -4117 2391 1987 5 1026 651 262 79 38 chr3 57830503 57830793 -101768990 - L1MCa LINE L1 -4706 1802 1501 5 1026 1109 239 5 0 chr3 57830802 57831007 -101768776 - B3 SINE B2 -9 207 2 5 1026 440 251 109 31 chr3 57831124 57831317 -101768466 - L1MCa LINE L1 -5033 1475 1268 5 1026 228 100 0 0 chr3 57831841 57831881 -101767902 + (C)n Simple_repeat Simple_repeat 1 40 0 5 1026 222 312 47 0 chr3 57832325 57832389 -101767394 - PB1D7 SINE Alu -42 78 12 5 1026 194 317 110 0 chr3 57832599 57832681 -101767102 - MIR SINE MIR -12 250 160 5 1026 423 68 0 0 chr3 57833184 57833243 -101766540 + (TG)n Simple_repeat Simple_repeat 2 60 0 5 1026 289 235 131 36 chr3 57833252 57833336 -101766447 - RSINE1 SINE B4 -28 137 46 5 1026 214 229 9 60 chr3 57833424 57833540 -101766243 + CT-rich Low_complexity Low_complexity 2 111 0 5 1026 207 276 17 0 chr3 57833506 57833564 -101766219 + (TCTG)n Simple_repeat Simple_repeat 2 60 0 5 1026 214 328 0 0 chr3 57833702 57833760 -101766023 - RSINE1 SINE B4 -105 60 3 5 1026 562 254 91 95 chr3 57834759 57835011 -101764772 + RLTR18 LTR ERVK 31 281 -335 5 1026 2813 245 29 140 chr3 57835118 57836240 -101763543 + RMER1C Other Other 244 1342 0 5 1026 1246 81 0 0 chr3 57836258 57836418 -101763365 + L1_Mus2 LINE L1 6403 6562 -4 5 1026 541 281 78 58 chr3 57836426 57836683 -101763100 + RLTR18 LTR ERVK 251 512 0 5 1026 2575 262 118 20 chr3 57836894 57837178 -101762605 + MTE2a-int LTR MaLR 703 1009 -571 5 1026 194 0 39 0 chr3 57837187 57837213 -101762570 + (TTG)n Simple_repeat Simple_repeat 2 28 0 5 1026 2674 137 83 28 chr3 57837213 57837639 -101762144 - RMER6B LTR ERVK -9 452 1 5 1026 2575 262 118 20 chr3 57837639 57838148 -101761635 + MTE2a-int LTR MaLR 1010 1574 -6 5 1026 631 277 94 43 chr3 57838157 57838391 -101761392 + MTE2a LTR MaLR 19 264 -115 5 1026 2696 48 3 3 chr3 57838480 57838814 -101760969 + IAPEY_LTR LTR ERVK 52 385 0 5 1026 238 221 58 32 chr3 57838814 57838896 -101760887 - MIR SINE MIR -119 143 62 5 1026 312 189 40 26 chr3 57838926 57839002 -101760781 + MLT1A LTR MaLR 3 79 -295 5 1026 228 294 12 12 chr3 57839324 57839410 -101760373 + Lx8 LINE L1 5810 5895 -1578 5 1026 697 266 27 33 chr3 57839469 57839652 -101760131 + B3A SINE B2 1 182 -16 5 1026 781 146 6 11 chr3 57839689 57839869 -101759914 + (CA)n Simple_repeat Simple_repeat 2 180 0 5 1026 287 342 91 8 chr3 57840093 57840214 -101759569 - MER20 DNA MER1_type -8 211 81 5 1026 197 195 0 0 chr3 57840423 57840464 -101759319 + MIR SINE MIR 113 153 -109 5 1026 540 315 119 35 chr3 57841211 57841530 -101758253 - RLTR23 LTR ERV1 0 430 85 5 1026 467 228 29 10 chr3 57841622 57841724 -101758059 - RLTR23 LTR ERV1 -317 113 10 5 1026 318 67 0 0 chr3 57843094 57843139 -101756644 + (CA)n Simple_repeat Simple_repeat 2 46 0 5 1026 854 178 56 56 chr3 57843139 57843318 -101756465 - RLTR14 LTR ERV1 -39 343 165 5 1026 2498 221 68 31 chr3 57843323 57843912 -101755871 + RLTR18 LTR ERVK 4 614 -2 5 1026 1015 171 0 92 chr3 57843912 57844118 -101755665 - RLTR14 LTR ERV1 -195 187 1 5 1026 2323 166 53 2 chr3 57844235 57844628 -101755155 + MTC LTR MaLR 1 413 -8 5 1026 936 140 20 20 chr3 57844744 57844890 -101754893 + B1_Mus1 SINE Alu 3 148 0 5 1026 656 310 106 13 chr3 57844923 57845321 -101754462 + L1_Mur3 LINE L1 1529 1963 -3917 5 1026 2278 109 16 0 chr3 57845429 57845749 -101754034 - ORR1A2 LTR MaLR -2 325 1 5 1026 1462 293 74 16 chr3 57845800 57846557 -101753226 + L1_Mur3 LINE L1 3163 3963 -1917 5 1026 474 65 0 0 chr3 57847352 57847414 -101752369 + (TA)n Simple_repeat Simple_repeat 2 63 0 5 1026 180 0 0 0 chr3 57847414 57847434 -101752349 + (TG)n Simple_repeat Simple_repeat 2 21 0 5 1026 327 273 0 0 chr3 57847504 57847772 -101752011 + (CA)n Simple_repeat Simple_repeat 1 268 0 5 1026 491 197 0 15 chr3 57847812 57847946 -101751837 + (CATA)n Simple_repeat Simple_repeat 4 135 0 5 1026 803 244 98 44 chr3 57849017 57849339 -101750444 - RMER20B LTR ERVK -206 421 98 5 1026 1490 288 21 56 chr3 57849942 57850458 -101749325 + Lx8 LINE L1 6276 6773 -700 5 1026 738 128 0 0 chr3 57850464 57850581 -101749202 + (GAA)n Simple_repeat Simple_repeat 1 117 0 5 1026 1338 73 0 0 chr3 57850581 57850760 -101749023 + (GGAGAA)n Simple_repeat Simple_repeat 2 180 0 6 1026 293 292 0 0 chr3 57850766 57850838 -101748945 + Lx8 LINE L1 6786 6857 -616 5 1026 322 344 80 45 chr3 57850919 57851120 -101748663 + Lx8 LINE L1 7075 7282 -191 5 1026 1785 179 76 9 chr3 57851380 57851724 -101748059 - ORR1B2 LTR MaLR 0 367 1 6 1026 1171 271 4 0 chr3 57852050 57852331 -101747452 - Lx8 LINE L1 -805 6668 6387 6 1026 195 114 0 0 chr3 57852649 57852684 -101747099 + (CA)n Simple_repeat Simple_repeat 2 36 0 6 1026 1348 272 40 40 chr3 57852794 57852848 -101746935 - MTE2a LTR MaLR 0 379 329 6 1026 558 43 0 0 chr3 57852848 57852917 -101746866 + (GA)n Simple_repeat Simple_repeat 2 70 0 6 1026 1348 272 40 40 chr3 57852917 57853241 -101746542 - MTE2a LTR MaLR -51 328 1 6 1026 22 0 0 0 chr3 57853459 57853481 -101746302 + AT_rich Low_complexity Low_complexity 1 22 0 6 1026 900 262 68 34 chr3 57853481 57853777 -101746006 - Lx8 LINE L1 -2 7471 7166 6 1026 3702 246 91 29 chr3 57854129 57855039 -101744744 - Lx9 LINE L1 -266 7378 6422 6 1026 3638 20 5 0 chr3 57855039 57855433 -101744350 - MTA_Mm LTR MaLR 0 396 1 6 1026 10116 21 2 0 chr3 57855433 57856529 -101743254 - MTA_Mm-int LTR MaLR 0 1098 1 6 1026 3493 21 29 0 chr3 57856529 57856914 -101742869 - MTA_Mm LTR MaLR 0 396 1 6 1026 3702 246 91 29 chr3 57856914 57857028 -101742755 - Lx9 LINE L1 -1223 6421 6291 6 1026 1653 154 119 28 chr3 57857084 57857411 -101742372 - ORR1C1 LTR MaLR -4 374 18 6 1026 404 37 19 0 chr3 57857623 57857677 -101742106 + (CA)n Simple_repeat Simple_repeat 2 56 0 6 1026 320 229 71 30 chr3 57857789 57857888 -101741895 - Lx8 LINE L1 -953 6520 6418 6 1026 204 125 0 0 chr3 57858165 57858197 -101741586 + (T)n Simple_repeat Simple_repeat 1 32 0 6 1026 226 239 122 22 chr3 57859238 57859328 -101740455 + MER33 DNA MER1_type 4 102 -222 6 1026 1483 167 341 41 chr3 57859329 57859748 -101740035 + MT2B LTR ERVL 1 545 -56 6 1026 472 148 35 0 chr3 57859751 57859866 -101739917 + (TCTG)n Simple_repeat Simple_repeat 2 120 0 6 1026 240 108 0 0 chr3 57859868 57859905 -101739878 + MT2B LTR ERVL 548 584 -17 6 1026 524 265 59 0 chr3 57860225 57860361 -101739422 - RSINE1 SINE B4 -19 146 3 6 1026 279 0 0 0 chr3 57860498 57860529 -101739254 + (TG)n Simple_repeat Simple_repeat 2 32 0 6 1026 249 229 40 67 chr3 57860576 57860651 -101739132 - B1F1 SINE Alu -19 130 29 6 1026 252 254 0 0 chr3 57861795 57861850 -101737933 + HAL1 LINE L1 1285 1339 -1168 6 1026 256 337 75 39 chr3 57861919 57862385 -101737398 - Lx8 LINE L1 -2 7471 6989 6 1026 995 306 100 2 chr3 57862562 57863024 -101736759 + L1MA7 LINE L1 5514 6020 -271 6 1026 568 270 87 14 chr3 57863200 57863407 -101736376 + HAL1 LINE L1 1567 1788 -719 6 1026 260 322 40 96 chr3 57863854 57864053 -101735730 - L2 LINE L2 -963 2456 2269 6 1026 2101 168 11 8 chr3 57865868 57866222 -101733561 - ORR1B2 LTR MaLR -12 355 1 6 1026 185 83 28 0 chr3 57866644 57866680 -101733103 + (TG)n Simple_repeat Simple_repeat 2 38 0 6 1026 641 206 47 8 chr3 57867079 57867206 -101732577 - B1_Mur1 SINE Alu -11 138 7 6 1026 259 258 65 101 chr3 57867103 57867241 -101732542 - MT2B LTR ERVL -337 264 132 6 1026 531 216 16 23 chr3 57867414 57867542 -101732241 + B1F2 SINE Alu 21 147 -2 6 1026 275 71 24 0 chr3 57868551 57868593 -101731190 + (TCTCCC)n Simple_repeat Simple_repeat 1 43 0 6 1026 1091 207 102 62 chr3 57868625 57868929 -101730854 + MTD LTR MaLR 104 419 0 6 1026 1692 203 98 45 chr3 57869148 57869546 -101730237 - MTD LTR MaLR 0 419 1 6 1026 37 69 0 0 chr3 57869725 57869797 -101729986 + AT_rich Low_complexity Low_complexity 1 72 0 6 1026 285 175 0 0 chr3 57869913 57869951 -101729832 + polypurine Low_complexity Low_complexity 1 38 0 6 1026 1158 122 0 0 chr3 57869951 57870131 -101729652 + (GAA)n Simple_repeat Simple_repeat 1 180 0 6 1026 285 175 0 0 chr3 57870131 57870149 -101729634 + polypurine Low_complexity Low_complexity 39 56 0 6 1026 3631 25 5 0 chr3 57870149 57870543 -101729240 + MTA_Mm LTR MaLR 1 396 0 6 1026 9685 30 8 1 chr3 57870543 57871633 -101728150 + MTA_Mm-int LTR MaLR 1 1098 0 6 1026 3631 25 5 0 chr3 57871633 57872027 -101727756 + MTA_Mm LTR MaLR 1 396 0 6 1026 522 0 0 0 chr3 57872027 57872085 -101727698 + (GAA)n Simple_repeat Simple_repeat 2 59 0 6 1026 658 141 12 77 chr3 57872521 57872690 -101727093 + HAL1-2a_MD LINE L1 2350 2507 -517 6 1026 365 156 49 59 chr3 57872690 57872792 -101726991 + HAL1-2a_MD LINE L1 2425 2525 -499 6 1026 2524 157 49 12 chr3 57872874 57873280 -101726503 + MTC LTR MaLR 1 421 0 6 1026 1622 314 29 33 chr3 57873383 57873930 -101725853 - Lx5 LINE L1 0 7050 6506 6 1026 321 26 0 0 chr3 57873930 57873968 -101725815 + (ATGGTG)n Simple_repeat Simple_repeat 1 38 0 6 1026 1347 72 0 0 chr3 57873969 57874149 -101725634 + (TGG)n Simple_repeat Simple_repeat 1 180 0 6 1026 1974 152 13 72 chr3 57874823 57875199 -101724584 + ORR1C1 LTR MaLR 18 371 -7 6 1026 1668 228 47 17 chr3 57875206 57875613 -101724170 + ORR1C1-int LTR MaLR 5 423 -947 6 1026 676 248 97 13 chr3 57875598 57875835 -101723948 + ORR1C1-int LTR MaLR 638 894 -364 6 1026 271 312 72 18 chr3 57875863 57875974 -101723809 - RMER17C LTR ERVK -62 348 232 6 1026 1121 212 12 118 chr3 57875974 57876397 -101723386 + RMER17C LTR ERVK 1 378 -32 6 1026 247 211 19 0 chr3 57876512 57876564 -101723219 + GA-rich Low_complexity Low_complexity 1 53 0 6 1026 1808 172 21 87 chr3 57876648 57877075 -101722708 + ORR1C1-int LTR MaLR 860 1258 0 6 1026 240 86 0 0 chr3 57877211 57877246 -101722537 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 6 1026 260 269 85 2 chr3 57877300 57877406 -101722377 - Lx8 LINE L1 -1213 6260 6147 6 1026 578 229 35 116 chr3 57877982 57878155 -101721628 + B4 SINE B4 65 223 -69 6 1026 1142 36 0 0 chr3 57878020 57878158 -101721625 + B1_Mus1 SINE Alu 11 148 0 6 1026 313 303 47 53 chr3 57878712 57878862 -101720921 + RLTR14 LTR ERV1 234 382 0 6 1026 1533 176 138 50 chr3 57878883 57879260 -101720523 - RMER17C LTR ERVK 0 410 1 6 1026 1264 260 93 56 chr3 57879437 57879921 -101719862 + RMER5 LTR ERV1 33 534 0 6 1026 225 0 0 0 chr3 57880269 57880294 -101719489 + (A)n Simple_repeat Simple_repeat 1 25 0 6 1026 229 136 67 22 chr3 57880863 57880908 -101718875 + L1MCa LINE L1 385 431 -6077 6 1026 1247 48 7 0 chr3 57881188 57881334 -101718449 - B1_Mm SINE Alu 0 147 1 6 1026 313 211 14 27 chr3 57881789 57881862 -101717921 + MER52-int LTR ERV1 7017 7088 -3 6 1026 840 195 274 0 chr3 57882271 57882497 -101717286 + Lx7 LINE L1 6804 7091 -605 6 1026 2846 132 43 69 chr3 57882497 57883034 -101716749 - RLTR24 LTR ERV1 -6 523 1 6 1026 1864 222 77 41 chr3 57883034 57883401 -101716382 + Lx7 LINE L1 7088 7460 -236 6 1026 1311 34 7 0 chr3 57883401 57883547 -101716236 - B1_Mus2 SINE Alu 0 147 1 6 1026 1864 222 77 41 chr3 57883547 57883766 -101716017 + Lx7 LINE L1 7461 7695 -1 6 1026 258 32 0 0 chr3 57883766 57883797 -101715986 + (GA)n Simple_repeat Simple_repeat 2 32 0 6 1026 742 59 0 0 chr3 57884285 57884387 -101715396 - L1Md_A LINE L1 -5430 1294 1193 6 1026 8363 49 1 3 chr3 57884364 57885378 -101714405 + L1_Mm LINE L1 4870 5881 -2 6 1026 1652 135 33 72 chr3 57885378 57885713 -101714070 - RLTRETN_Mm LTR ERVK 0 322 1 6 1026 3246 95 8 51 chr3 57885713 57886222 -101713561 - MMETn-int LTR ERVK 0 4844 4358 6 1026 601 15 0 0 chr3 57886232 57886300 -101713483 + L1Md_F2 LINE L1 5876 5943 -639 6 1026 1830 231 14 43 chr3 57886300 57886744 -101713039 + RMER19C LTR ERVK 181 611 0 6 1026 371 332 58 31 chr3 57886745 57886969 -101712814 + MER113 DNA MER1_type 135 364 -157 6 1026 224 283 172 11 chr3 57887029 57887122 -101712661 + PB1 SINE Alu 16 123 -4 6 1026 249 33 0 0 chr3 57887122 57887152 -101712631 + (TG)n Simple_repeat Simple_repeat 2 31 0 6 1026 513 247 86 25 chr3 57887462 57887624 -101712159 - ORR1D2 LTR MaLR -194 176 5 6 1026 5013 88 2 2 chr3 57887907 57888546 -101711237 - L1_Mus4 LINE L1 0 6636 5998 6 1026 1112 96 0 0 chr3 57888788 57888934 -101710849 - B1_Mus2 SINE Alu -1 146 1 6 1026 2418 52 3 0 chr3 57888981 57889271 -101710512 - L1_Mus1 LINE L1 -351 6216 5926 6 1026 1816 70 0 0 chr3 57889271 57889500 -101710283 + L1_Mus1 LINE L1 6338 6566 -1 6 1026 243 0 0 0 chr3 57889502 57889529 -101710254 + (TTAA)n Simple_repeat Simple_repeat 4 30 0 6 1026 681 250 45 60 chr3 57889534 57889734 -101710049 + B4A SINE B4 82 278 -14 6 1026 351 0 0 0 chr3 57889821 57889860 -101709923 + (CA)n Simple_repeat Simple_repeat 1 39 0 6 1026 305 64 0 41 chr3 57889862 57889911 -101709872 + (CAGAGA)n Simple_repeat Simple_repeat 2 48 0 6 1026 450 323 105 32 chr3 57889952 57890323 -101709460 + L1ME3 LINE L1 3457 3854 -2292 6 1026 857 307 26 4 chr3 57890325 57890590 -101709193 + B4A SINE B4 1 271 -21 6 1026 374 318 83 4 chr3 57890762 57891040 -101708743 + L1ME3 LINE L1 4544 4843 -1303 6 1026 285 29 0 0 chr3 57891044 57891078 -101708705 + (TA)n Simple_repeat Simple_repeat 1 34 0 6 1026 1033 281 96 6 chr3 57891355 57891491 -101708292 + MTEa LTR MaLR 17 163 -216 6 1026 423 83 0 0 chr3 57891491 57891551 -101708232 + (TAA)n Simple_repeat Simple_repeat 2 61 0 6 1026 1033 281 96 6 chr3 57891551 57891747 -101708036 + MTEa LTR MaLR 164 378 -1 6 1026 23 0 0 0 chr3 57891756 57891779 -101708004 + AT_rich Low_complexity Low_complexity 1 23 0 6 1026 516 315 64 32 chr3 57891782 57892064 -101707719 + L1ME3 LINE L1 5621 5911 -251 6 1026 360 0 0 0 chr3 57892358 57892398 -101707385 + (TG)n Simple_repeat Simple_repeat 2 41 0 6 1026 370 318 0 0 chr3 57893043 57893150 -101706633 + PB1D10 SINE Alu 5 111 -6 6 1026 468 0 0 0 chr3 57894777 57894829 -101704954 + (TTA)n Simple_repeat Simple_repeat 3 54 0 6 1026 432 0 0 0 chr3 57894988 57895036 -101704747 + (TC)n Simple_repeat Simple_repeat 1 48 0 6 1026 297 0 0 0 chr3 57895036 57895068 -101704715 + (CA)n Simple_repeat Simple_repeat 1 33 0 6 1026 1624 186 100 0 chr3 57895241 57895590 -101704193 + ORR1C2 LTR MaLR 1 384 0 6 1026 191 148 0 36 chr3 57896158 57896214 -101703569 + A-rich Low_complexity Low_complexity 2 55 0 6 1026 267 89 35 18 chr3 57896333 57896390 -101703393 + (TA)n Simple_repeat Simple_repeat 2 59 0 6 1026 465 241 18 9 chr3 57897149 57897262 -101702521 - ORR1C1 LTR MaLR 0 378 265 6 1026 269 279 0 14 chr3 57897334 57897403 -101702380 + PB1D10 SINE Alu 24 91 -26 6 1026 210 143 0 0 chr3 57897403 57897438 -101702345 + (CATG)n Simple_repeat Simple_repeat 4 38 0 6 1026 2306 119 42 3 chr3 57897617 57897970 -101701813 - ORR1B2 LTR MaLR 0 367 1 6 1026 521 264 31 68 chr3 57898140 57898331 -101701452 - B3A SINE B2 0 198 15 6 1026 2870 255 46 46 chr3 57898331 57898949 -101700834 - L1MC1 LINE L1 -2 6331 5704 6 1026 477 0 0 0 chr3 57898949 57899002 -101700781 + (TG)n Simple_repeat Simple_repeat 2 54 0 6 1026 3115 147 60 68 chr3 57899006 57899627 -101700156 - RLTR18 LTR ERVK 0 616 1 6 1026 2870 255 46 46 chr3 57899627 57900078 -101699705 - L1MC1 LINE L1 -630 5703 5258 6 1026 292 318 18 18 chr3 57900087 57900196 -101699587 - PB1D10 SINE Alu 0 117 9 7 1026 287 162 68 0 chr3 57900213 57900287 -101699496 - L1MC1 LINE L1 -893 5253 5175 6 1026 430 203 150 38 chr3 57900313 57900446 -101699337 - B1_Mur3 SINE Alu 0 149 2 7 1026 435 252 356 0 chr3 57900608 57900878 -101698905 + MTEa LTR MaLR 1 379 0 7 1026 12740 106 28 5 chr3 57900931 57904172 -101695611 - L1VL4 LINE L1 -5 3909 561 7 1026 424 290 200 6 chr3 57904746 57904916 -101694867 + B3 SINE B2 3 205 -11 7 1026 697 200 69 0 chr3 57904923 57905053 -101694730 + B1_Mur2 SINE Alu 3 141 -8 7 1026 234 0 0 0 chr3 57905075 57905101 -101694682 + (TAAA)n Simple_repeat Simple_repeat 4 29 0 7 1026 8429 43 2 1 chr3 57905222 57906499 -101693284 - L1Md_F2 LINE L1 -12 6570 5290 7 1026 9710 65 1 27 chr3 57908213 57909527 -101690256 - L1Md_F2 LINE L1 -561 5322 4044 7 1026 363 273 138 42 chr3 57910459 57910815 -101688968 + L1M5 LINE L1 3025 3414 -2732 7 1026 791 230 0 0 chr3 57910827 57910975 -101688808 + B1_Mur1 SINE Alu 2 149 0 7 1026 391 242 31 12 chr3 57913286 57913394 -101686389 - B1F2 SINE Alu -16 134 25 7 1026 410 253 11 0 chr3 57914095 57914186 -101685597 - PB1D10 SINE Alu -18 99 8 7 1026 206 221 68 68 chr3 57914365 57914438 -101685345 - L3 LINE CR1 -6 4483 4411 7 1026 193 258 95 16 chr3 57914785 57914848 -101684935 - MIR SINE MIR -116 146 79 7 1026 290 302 86 20 chr3 57915234 57915386 -101684397 + MER3 DNA MER1_type 1 162 -47 7 1026 267 296 136 0 chr3 57915620 57915708 -101684075 + PB1D10 SINE Alu 18 117 0 7 1026 415 262 18 12 chr3 57916040 57916206 -101683577 + (TA)n Simple_repeat Simple_repeat 1 167 0 7 1026 1325 238 58 43 chr3 57917295 57917779 -101682004 + RMER5 LTR ERV1 33 523 -11 7 1026 869 250 89 23 chr3 57917958 57918132 -101681651 + B4 SINE B4 18 207 -85 7 1026 1581 223 59 27 chr3 57918132 57918538 -101681245 - MTD LTR MaLR 0 419 1 7 1026 869 250 89 23 chr3 57918538 57918621 -101681162 + B4 SINE B4 208 292 0 7 1026 2418 202 51 15 chr3 57919093 57919542 -101680241 + RLTR20B1 LTR ERVK 1 458 -105 7 1026 360 0 0 0 chr3 57919542 57919582 -101680201 + (TG)n Simple_repeat Simple_repeat 2 41 0 7 1026 2418 202 51 15 chr3 57919582 57919659 -101680124 + RLTR20B1 LTR ERVK 459 545 -18 7 1026 617 163 7 0 chr3 57919792 57919927 -101679856 + (CA)n Simple_repeat Simple_repeat 2 137 0 7 1026 295 340 38 0 chr3 57920226 57920332 -101679451 - LTR16A LTR ERVL -328 123 14 7 1026 216 341 57 8 chr3 57920357 57920481 -101679302 + MIR3 SINE MIR 73 202 -6 7 1026 690 334 111 38 chr3 57921786 57922256 -101677527 + MLT2B3 LTR ERVL 1 504 -50 7 1026 716 111 8 0 chr3 57922258 57922375 -101677408 + (CA)n Simple_repeat Simple_repeat 1 118 0 7 1026 539 325 36 62 chr3 57922394 57922751 -101677032 - ORR1E LTR MaLR -6 353 6 7 1026 309 109 0 0 chr3 57923309 57923364 -101676419 + (GA)n Simple_repeat Simple_repeat 1 55 0 7 1026 850 258 96 55 chr3 57923958 57924111 -101675672 + B4A SINE B4 3 175 -117 7 1026 2379 161 88 30 chr3 57924111 57924610 -101675173 + RLTR11A LTR ERVK 1 528 0 7 1026 850 258 96 55 chr3 57924610 57924727 -101675056 + B4A SINE B4 176 284 -8 7 1026 279 310 60 8 chr3 57927305 57927422 -101672361 + B1F SINE Alu 22 144 -5 7 1026 212 186 23 0 chr3 57927492 57927535 -101672248 + GA-rich Low_complexity Low_complexity 2 45 0 7 1026 406 149 48 30 chr3 57927559 57927899 -101671884 + (TG)n Simple_repeat Simple_repeat 1 346 0 7 1026 312 181 47 24 chr3 57927949 57928119 -101671664 + (TG)n Simple_repeat Simple_repeat 1 174 0 7 1026 291 288 46 35 chr3 57928352 57928525 -101671258 - L1M5 LINE L1 -838 5308 5134 7 1026 1058 258 133 83 chr3 57928568 57929096 -101670687 - L1MC1 LINE L1 0 6333 5779 7 1026 2225 190 24 10 chr3 57929096 57929511 -101670272 - MTC LTR MaLR 0 421 1 7 1026 1058 258 133 83 chr3 57929511 57929562 -101670221 - L1MC1 LINE L1 -555 5778 5725 7 1026 907 222 97 0 chr3 57929668 57929916 -101669867 - L1MC1 LINE L1 -1704 4442 4171 7 1026 393 70 0 0 chr3 57930555 57930612 -101669171 + (TG)n Simple_repeat Simple_repeat 1 57 0 7 1026 405 0 0 0 chr3 57931237 57931282 -101668501 + (TAGA)n Simple_repeat Simple_repeat 2 46 0 7 1026 405 0 0 0 chr3 57931289 57931334 -101668449 + (TC)n Simple_repeat Simple_repeat 1 45 0 7 1026 210 191 0 0 chr3 57931339 57931386 -101668397 + (CACG)n Simple_repeat Simple_repeat 1 47 0 7 1026 439 335 92 32 chr3 57931879 57932160 -101667623 + MT2A LTR ERVL 135 432 -101 7 1026 486 286 69 29 chr3 57932719 57932892 -101666891 + B3A SINE B2 3 182 -16 7 1026 276 246 0 0 chr3 57932893 57932962 -101666821 + (CA)n Simple_repeat Simple_repeat 2 70 0 7 1027 338 131 0 62 chr3 57934593 57934658 -101665125 - URR1B DNA MER1_type 0 225 165 7 1027 3706 92 4 9 chr3 57934688 57935235 -101664548 + RLTR1D LTR ERV1 62 605 0 7 1027 839 224 18 0 chr3 57935235 57935400 -101664383 - URR1B DNA MER1_type -57 168 1 7 1027 271 0 51 0 chr3 57936111 57936150 -101663633 + (TTTTTG)n Simple_repeat Simple_repeat 2 42 0 7 1027 331 252 121 76 chr3 57936724 57936968 -101662815 + MER34 LTR ERV1 304 571 0 7 1027 705 328 92 26 chr3 57937291 57937639 -101662144 + MLT1H1 LTR MaLR 185 555 0 7 1027 189 0 0 0 chr3 57937773 57937794 -101661989 + (CACCC)n Simple_repeat Simple_repeat 1 21 0 7 1027 1550 151 62 4 chr3 57937796 57938068 -101661715 + Lx LINE L1 6348 6635 -19 7 1027 260 301 31 81 chr3 57938224 57938410 -101661373 - MLT1J2 LTR MaLR -230 282 74 7 1027 7125 50 16 12 chr3 57938641 57939527 -101660256 + L1Md_F2 LINE L1 5694 6582 0 7 1027 967 211 34 5 chr3 57940401 57940610 -101659173 - B3 SINE B2 0 216 2 7 1027 259 276 0 13 chr3 57941003 57941080 -101658703 + B1F SINE Alu 73 148 -1 7 1027 471 257 9 9 chr3 57941658 57941772 -101658011 - MTE2b LTR MaLR -207 172 59 7 1027 21 57 0 0 chr3 57941865 57941900 -101657883 + AT_rich Low_complexity Low_complexity 1 35 0 7 1027 1891 147 134 9 chr3 57941900 57942250 -101657533 - ORR1B1 LTR MaLR 0 394 1 7 1027 297 75 0 0 chr3 57942464 57942504 -101657279 + (GA)n Simple_repeat Simple_repeat 1 40 0 7 1027 225 94 0 0 chr3 57942904 57942936 -101656847 + (TGAG)n Simple_repeat Simple_repeat 1 32 0 7 1027 1794 180 91 5 chr3 57943796 57944171 -101655612 - MTC LTR MaLR -13 408 2 7 1027 368 275 6 0 chr3 57944513 57944684 -101655099 + (TG)n Simple_repeat Simple_repeat 1 172 0 7 1027 240 229 0 0 chr3 57944687 57944735 -101655048 + (TATATG)n Simple_repeat Simple_repeat 6 53 0 7 1027 227 286 29 0 chr3 57944913 57944983 -101654800 - ID4 SINE ID 0 83 12 7 1027 307 327 69 38 chr3 57945479 57945638 -101654145 + MER20 DNA MER1_type 49 212 -7 7 1027 262 135 0 0 chr3 57946615 57946652 -101653131 - RLTR19-int LTR ERVK -1756 4381 4345 7 1027 2692 219 16 78 chr3 57946736 57947489 -101652294 - RLTR19-int LTR ERVK -2008 4129 3424 7 1027 815 37 28 0 chr3 57947594 57947701 -101652082 + MTA_Mm LTR MaLR 287 396 0 7 1027 447 50 0 0 chr3 57947701 57947761 -101652022 + MTA_Mm-int LTR MaLR 1 60 -1038 7 1027 1737 192 39 17 chr3 57947763 57948123 -101651660 - RLTR19-int LTR ERVK -2987 3150 2783 7 1027 721 218 75 30 chr3 57948119 57948374 -101651409 - RLTR19-int LTR ERVK -3552 2585 2433 7 1027 756 211 65 28 chr3 57948420 57948635 -101651148 - RLTR19-int LTR ERVK -3430 2092 1870 7 1027 633 305 47 9 chr3 57948751 57948963 -101650820 - URR1A DNA MER1_type 0 226 7 7 1027 499 242 74 108 chr3 57949048 57949372 -101650411 - MTC-int LTR MaLR -36 1222 910 7 1027 786 236 9 38 chr3 57949372 57949583 -101650200 - RLTR19-int LTR ERVK -4909 1228 1024 7 1027 485 105 113 0 chr3 57949756 57949848 -101649935 - RLTR19-int LTR ERVK -5161 976 888 7 1027 279 151 51 122 chr3 57949874 57949951 -101649832 - RLTR19-int LTR ERVK -4264 1258 1187 7 1027 2756 109 11 76 chr3 57949951 57950409 -101649374 + RLTR23 LTR ERV1 1 428 -2 7 1027 279 151 51 122 chr3 57950409 57950429 -101649354 - RLTR19-int LTR ERVK -4336 1186 1168 7 1027 342 228 0 114 chr3 57950485 57950599 -101649184 - RLTR19-int LTR ERVK -5245 892 792 7 1027 959 194 15 64 chr3 57950695 57950959 -101648824 - RMER16 LTR ERVK 0 533 283 7 1027 3717 103 59 14 chr3 57951094 57951653 -101648130 - Lx LINE L1 -2 6652 6069 7 1027 180 0 0 0 chr3 57952438 57952458 -101647325 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 7 1027 288 127 0 18 chr3 57953288 57953344 -101646439 + URR1B DNA MER1_type 110 164 -61 7 1027 391 244 99 81 chr3 57953484 57953576 -101646207 + MER20B DNA MER1_type 503 586 -197 7 1027 2184 139 87 16 chr3 57953576 57953956 -101645827 - MTB_Mm LTR MaLR 0 407 1 7 1027 391 244 99 81 chr3 57953956 57954080 -101645703 + MER20B DNA MER1_type 587 723 -60 7 1027 552 309 125 28 chr3 57954080 57954439 -101645344 - MLT1E1A LTR MaLR -1 679 286 7 1027 230 266 42 105 chr3 57954478 57954621 -101645162 - MLT1E1A LTR MaLR -520 160 27 7 1027 756 286 83 58 chr3 57954841 57955119 -101644664 + B4 SINE B4 8 292 0 7 1027 703 224 123 15 chr3 57955198 57955393 -101644390 + B3 SINE B2 1 216 0 7 1027 345 24 0 0 chr3 57955420 57955462 -101644321 + (TG)n Simple_repeat Simple_repeat 1 42 0 7 1027 386 218 23 11 chr3 57955473 57955561 -101644222 + MTC LTR MaLR 6 94 -327 7 1027 393 273 105 29 chr3 57956095 57956382 -101643401 - L1M3 LINE L1 -754 5605 5294 7 1027 180 77 0 0 chr3 57956392 57956418 -101643365 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 7 1027 432 172 115 0 chr3 57956418 57956505 -101643278 - PB1D7 SINE Alu -12 108 12 7 1027 1726 155 129 0 chr3 57956615 57956957 -101642826 - ORR1B1 LTR MaLR -8 386 1 7 1027 579 137 0 0 chr3 57957440 57957538 -101642245 + (TC)n Simple_repeat Simple_repeat 1 98 0 7 1027 387 0 0 0 chr3 57957538 57957581 -101642202 + (TG)n Simple_repeat Simple_repeat 2 44 0 7 1027 579 137 0 0 chr3 57957581 57957599 -101642184 + (TC)n Simple_repeat Simple_repeat 1 18 0 7 1027 573 15 0 0 chr3 57958839 57958905 -101640878 + (TC)n Simple_repeat Simple_repeat 1 66 0 7 1027 682 251 58 24 chr3 57959320 57959528 -101640255 - MER2 DNA MER2_type -13 332 118 7 1027 3022 129 99 15 chr3 57959715 57960313 -101639470 + RMER6A LTR ERVK 109 756 0 7 1027 411 251 100 173 chr3 57960314 57960574 -101639209 + MLT1F2 LTR MaLR 176 416 -153 7 1027 203 171 0 0 chr3 57962056 57962097 -101637686 + T-rich Low_complexity Low_complexity 4 44 0 7 1027 213 65 0 0 chr3 57962100 57962131 -101637652 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 7 1027 314 83 0 0 chr3 57962860 57962908 -101636875 + B1_Mur4 SINE Alu 1 48 -102 7 1027 250 250 62 50 chr3 57962978 57963058 -101636725 - ID4 SINE ID -2 81 1 7 1027 333 0 0 0 chr3 57963085 57963122 -101636661 + (TTTTG)n Simple_repeat Simple_repeat 3 39 0 7 1027 413 273 163 16 chr3 57963125 57963248 -101636535 - ID_B1 SINE B4 -1 223 83 8 1027 924 65 0 0 chr3 57963806 57963930 -101635853 + (TTGG)n Simple_repeat Simple_repeat 4 127 0 8 1027 231 61 0 0 chr3 57964081 57964114 -101635669 + (TTTG)n Simple_repeat Simple_repeat 1 33 0 8 1027 883 188 146 119 chr3 57964229 57964647 -101635136 + MT2B LTR ERVL 4 546 -55 8 1027 432 0 0 0 chr3 57964647 57964695 -101635088 + (TAGA)n Simple_repeat Simple_repeat 1 48 0 8 1027 883 170 148 112 chr3 57964695 57964758 -101635025 + MT2B LTR ERVL 547 599 -2 8 1027 328 294 16 40 chr3 57964817 57964941 -101634842 + LTR16E1 LTR ERVL 418 538 0 8 1027 261 40 19 57 chr3 57967502 57967555 -101632228 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 8 1027 831 337 54 96 chr3 57967731 57968512 -101631271 + LTR41B LTR ERVL 1 748 -10 8 1027 251 232 149 18 chr3 57968611 57968725 -101631058 + L1MC5 LINE L1 7302 7430 -531 8 1027 200 228 18 0 chr3 57968782 57968839 -101630944 + (TCTA)n Simple_repeat Simple_repeat 4 61 0 8 1027 25 31 0 0 chr3 57968933 57968965 -101630818 + AT_rich Low_complexity Low_complexity 1 32 0 8 1027 341 269 92 49 chr3 57970309 57970493 -101629290 - ORR1E LTR MaLR -167 192 1 8 1027 464 241 0 74 chr3 57971587 57971609 -101628174 - PB1D7 SINE Alu -8 112 93 8 1027 2072 158 16 55 chr3 57971609 57971991 -101627792 + ORR1B2 LTR MaLR 1 367 0 8 1027 464 241 0 74 chr3 57971991 57972089 -101627694 - PB1D7 SINE Alu -28 92 1 8 1027 534 232 58 0 chr3 57973018 57973156 -101626627 - ID_B1 SINE B4 -2 222 77 8 1027 1123 133 6 0 chr3 57973419 57973599 -101626184 + B2_Mm2 SINE B2 1 181 -14 8 1027 326 112 336 9 chr3 57973612 57973719 -101626064 + B2_Mm2 SINE B2 47 188 -7 8 1027 2010 228 10 38 chr3 57974369 57974875 -101624908 - RCHARR1 DNA MER1_type 0 974 483 8 1027 505 255 55 48 chr3 57975047 57975212 -101624571 - Lx8 LINE L1 -62 7411 7246 8 1027 1216 36 0 0 chr3 57975284 57975423 -101624360 + B1_Mm SINE Alu 1 139 -8 8 1027 221 0 35 0 chr3 57975438 57975467 -101624316 + (CAAAAA)n Simple_repeat Simple_repeat 1 30 0 8 1027 1250 245 136 25 chr3 57975468 57975916 -101623867 - RCHARR1 DNA MER1_type -474 500 3 8 1027 195 69 0 0 chr3 57976441 57976470 -101623313 + (CA)n Simple_repeat Simple_repeat 2 30 0 8 1027 570 18 97 0 chr3 57977598 57977712 -101622071 + (TTTTTG)n Simple_repeat Simple_repeat 2 126 0 8 1027 780 57 0 0 chr3 57977717 57977823 -101621960 - B1_Mus2 SINE Alu 0 147 42 8 1027 331 190 52 138 chr3 57977722 57977838 -101621945 - B4 SINE B4 -71 221 116 8 1027 1105 86 0 49 chr3 57977866 57978049 -101621734 + B2_Mm2 SINE B2 1 174 -21 8 1027 210 71 0 0 chr3 57978155 57978183 -101621600 + (CATATA)n Simple_repeat Simple_repeat 3 30 0 8 1027 486 248 9 0 chr3 57978284 57978393 -101621390 + PB1D7 SINE Alu 3 112 -8 8 1027 2036 132 11 3 chr3 57978718 57979074 -101620709 + RLTR15 LTR ERVK 1 359 0 8 1027 395 289 54 15 chr3 57979074 57979190 -101620593 + B1F2 SINE Alu 28 148 -1 8 1027 218 295 0 0 chr3 57979201 57979262 -101620521 + G-rich Low_complexity Low_complexity 4 64 0 8 1027 1108 135 10 15 chr3 57980381 57980553 -101619230 + B2_Mm2 SINE B2 1 174 -21 8 1027 3146 112 32 8 chr3 57980553 57981022 -101618761 + Lx2 LINE L1 6506 6985 -12 8 1027 1108 135 10 15 chr3 57981022 57981045 -101618738 + B2_Mm2 SINE B2 175 195 0 8 1027 22 0 0 0 chr3 57981322 57981344 -101618439 + AT_rich Low_complexity Low_complexity 1 22 0 8 1027 859 221 0 62 chr3 57981346 57981554 -101618229 - B3A SINE B2 0 198 4 8 1027 288 0 0 0 chr3 57981592 57981624 -101618159 + (TTCA)n Simple_repeat Simple_repeat 2 33 0 8 1027 318 50 0 0 chr3 57981639 57981679 -101618104 + (CA)n Simple_repeat Simple_repeat 1 40 0 8 1027 408 199 114 20 chr3 57982128 57982277 -101617506 + Charlie4a DNA MER1_type 104 266 -242 8 1027 1118 135 73 0 chr3 57982283 57982475 -101617308 + Lx7 LINE L1 5096 5301 -579 8 1027 1656 145 82 51 chr3 57982475 57982537 -101617246 + ORR1B2 LTR MaLR 1 58 -309 8 1027 3393 180 9 12 chr3 57982537 57983185 -101616598 + Lx4B LINE L1 6413 7058 0 8 1027 1656 145 82 51 chr3 57983185 57983478 -101616305 + ORR1B2 LTR MaLR 59 367 0 8 1027 3865 148 7 14 chr3 57983478 57984288 -101615495 + Lx7 LINE L1 5297 6110 -1586 8 1027 357 82 0 0 chr3 57984288 57984337 -101615446 + (GAGAA)n Simple_repeat Simple_repeat 5 53 0 8 1027 2009 196 80 5 chr3 57984340 57984755 -101615028 + Lx7 LINE L1 6029 6474 -1222 8 1027 509 178 113 43 chr3 57984758 57984899 -101614884 + RMER10A LTR ERVL 1 151 -291 8 1027 666 186 0 8 chr3 57984932 57985051 -101614732 + B1_Mur1 SINE Alu 1 118 -31 8 1027 729 0 0 0 chr3 57985071 57985152 -101614631 + (GGGA)n Simple_repeat Simple_repeat 4 84 0 8 1027 218 288 61 0 chr3 57986785 57986851 -101612932 - PB1D7 SINE Alu -8 112 43 8 1027 261 219 82 0 chr3 57987190 57987263 -101612520 - MTEb LTR MaLR -18 361 283 8 1027 197 65 0 31 chr3 57987625 57987657 -101612126 + (CCCCCT)n Simple_repeat Simple_repeat 5 35 0 8 1027 245 302 0 0 chr3 57987741 57987804 -101611979 - MTEb LTR MaLR -99 280 218 8 1027 30 27 0 0 chr3 57987842 57987879 -101611904 + AT_rich Low_complexity Low_complexity 1 37 0 8 1027 180 0 0 0 chr3 57987908 57987928 -101611855 + (CAAAAA)n Simple_repeat Simple_repeat 3 22 0 8 1027 288 0 0 0 chr3 57988058 57988090 -101611693 + (CA)n Simple_repeat Simple_repeat 1 32 0 8 1027 459 0 0 0 chr3 57988090 57988140 -101611643 + (GA)n Simple_repeat Simple_repeat 2 52 0 8 1027 540 0 0 0 chr3 57989022 57989082 -101610701 + (TC)n Simple_repeat Simple_repeat 2 61 0 8 1027 258 56 0 0 chr3 57989082 57989117 -101610666 + (TG)n Simple_repeat Simple_repeat 1 36 0 8 1027 1167 266 62 19 chr3 57989454 57989876 -101609907 - L1M2 LINE L1 -2059 4786 4347 8 1027 483 236 198 0 chr3 57989883 57990040 -101609743 + B3A SINE B2 2 189 -9 8 1027 623 279 43 67 chr3 57990192 57990610 -101609173 - L1M2 LINE L1 -2697 4148 3741 8 1027 39418 4 0 0 chr3 57990611 57996168 -101603615 + L1Md_A LINE L1 30 5586 -297 8 1027 9194 3 0 0 chr3 57996168 57997163 -101602620 + L1Md_A LINE L1 5587 6581 -1 8 1027 1303 264 53 122 chr3 57997175 57997680 -101602103 - L1M2 LINE L1 -3111 3734 3223 8 1027 1486 84 0 5 chr3 57997680 57997896 -101601887 + L1_Mus4 LINE L1 6421 6635 -1 8 1027 1303 264 53 122 chr3 57997896 57997951 -101601832 - L1M2 LINE L1 -3623 3222 3193 8 1027 1134 83 0 0 chr3 57997951 57998096 -101601687 + B1_Mus1 SINE Alu 2 146 -2 8 1027 1303 264 53 122 chr3 57998096 57998406 -101601377 - L1M2 LINE L1 -3653 3192 2923 8 1027 242 237 0 4 chr3 57998527 57998583 -101601200 - B1F2 SINE Alu -59 61 7 8 1027 633 49 0 0 chr3 57998611 57998692 -101601091 + (CAATA)n Simple_repeat Simple_repeat 5 85 0 8 1027 676 183 14 34 chr3 57998746 57998893 -101600890 - B1_Mur2 SINE Alu -1 148 5 8 1027 845 238 160 6 chr3 57998898 57999236 -101600547 - L1M2 LINE L1 -3957 2892 2503 8 1027 1846 192 65 13 chr3 57999236 57999633 -101600150 + MTD LTR MaLR 2 404 -15 8 1027 338 288 96 19 chr3 58000044 58000200 -101599583 - L1M2c LINE L1 -6367 422 255 1 1027 378 344 88 0 chr3 58000253 58000378 -101599405 + B1F1 SINE Alu 2 137 -12 2 1027 192 77 0 0 chr3 58000400 58000426 -101599357 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 3 1027 284 347 58 0 chr3 58000515 58000636 -101599147 + B1F SINE Alu 15 142 -7 4 1027 988 244 9 45 chr3 58000659 58000882 -101598901 + B3 SINE B2 1 215 -1 5 1027 2053 183 65 0 chr3 58000957 58001312 -101598471 - ORR1C1 LTR MaLR 0 378 1 6 1027 3344 145 21 118 chr3 58001335 58002082 -101597701 - ORR1C1-int LTR MaLR -57 1452 778 6 1027 2969 64 3 8 chr3 58002082 58002473 -101597310 + MTA_Mm LTR MaLR 1 389 -7 7 1027 521 244 14 43 chr3 58002473 58002614 -101597169 - B1_Mur2 SINE Alu -11 138 2 8 1027 3169 154 83 2 chr3 58002621 58003188 -101596595 - ORR1C1-int LTR MaLR -887 622 10 6 1027 1587 193 40 6 chr3 58003184 58003512 -101596271 + ORR1B1 LTR MaLR 6 344 -50 9 1027 881 222 68 36 chr3 58003512 58003732 -101596051 + ORR1D2 LTR MaLR 144 370 0 1 1027 930 321 92 43 chr3 58004352 58004840 -101594943 - MT2A LTR ERVL 0 533 22 1 1027 1055 124 35 23 chr3 58006043 58006216 -101593567 - B2_Mm2 SINE B2 -20 175 1 1 1027 237 178 0 0 chr3 58006604 58006649 -101593134 + (TGAA)n Simple_repeat Simple_repeat 1 45 0 1 1027 258 282 12 25 chr3 58007043 58007123 -101592660 + GA-rich Low_complexity Low_complexity 5 83 0 1 1027 181 242 45 180 chr3 58008795 58008906 -101590877 - L2c LINE L2 -16 3371 3276 1 1027 1510 66 22 0 chr3 58009190 58009372 -101590411 - B2_Mm2 SINE B2 -7 188 3 1 1027 563 246 76 51 chr3 58009639 58009836 -101589947 - LTR33 LTR ERVL -169 346 145 1 1027 657 0 0 0 chr3 58010064 58010137 -101589646 + (CTG)n Simple_repeat Simple_repeat 2 74 0 1 1027 324 0 0 0 chr3 58010939 58010975 -101588808 + (CA)n Simple_repeat Simple_repeat 2 37 0 1 1027 237 258 140 30 chr3 58011597 58011697 -101588086 - L1MC LINE L1 -2146 5736 5626 2 1027 379 136 0 33 chr3 58011718 58011779 -101588004 + PB1D9 SINE Alu 1 59 -61 2 1027 309 141 0 0 chr3 58011782 58011853 -101587930 + (GGA)n Simple_repeat Simple_repeat 1 71 0 2 1027 600 181 0 37 chr3 58011861 58011970 -101587813 + B1_Mur2 SINE Alu 42 146 -3 2 1027 659 153 0 8 chr3 58011974 58012106 -101587677 + GA-rich Low_complexity Low_complexity 3 133 0 2 1027 429 262 53 53 chr3 58012213 58012346 -101587437 + RSINE1 SINE B4 4 136 -29 2 1027 620 93 0 10 chr3 58012347 58012445 -101587338 + (CA)n Simple_repeat Simple_repeat 2 98 0 2 1027 302 268 115 35 chr3 58012965 58013023 -101586760 - Charlie4a DNA MER1_type -22 486 420 2 1027 1731 171 132 3 chr3 58013023 58013363 -101586420 + ORR1C2 LTR MaLR 1 384 0 2 1027 302 268 115 35 chr3 58013363 58013478 -101586305 - Charlie4a DNA MER1_type -89 419 299 2 1027 180 0 0 0 chr3 58013540 58013560 -101586223 + (TA)n Simple_repeat Simple_repeat 1 20 0 2 1027 285 284 97 69 chr3 58013619 58013763 -101586020 - Charlie4a DNA MER1_type -236 272 125 2 1027 195 42 0 0 chr3 58013938 58013962 -101585821 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 3 1027 252 285 34 30 chr3 58014150 58014263 -101585520 + MIR SINE MIR 30 144 -64 3 1027 311 227 172 25 chr3 58014265 58014387 -101585396 + L1MD3 LINE L1 7842 7981 -14 3 1027 2017 140 6 27 chr3 58015660 58015990 -101583793 + MTC LTR MaLR 91 413 -8 3 1027 332 242 7 31 chr3 58015975 58016129 -101583654 - ORR1D1 LTR MaLR -209 165 5 3 1027 559 285 134 0 chr3 58016249 58016435 -101583348 + ID_B1 SINE B4 2 212 -12 3 1027 201 147 0 0 chr3 58016525 58016559 -101583224 + (T)n Simple_repeat Simple_repeat 1 34 0 3 1027 590 65 0 0 chr3 58016561 58016638 -101583145 - B1_Mus2 SINE Alu 0 147 71 3 1027 309 345 37 43 chr3 58016680 58016868 -101582915 - LTR33B LTR ERVL -290 213 27 3 1027 369 0 0 0 chr3 58016949 58016990 -101582793 + (TG)n Simple_repeat Simple_repeat 2 42 0 3 1027 250 364 45 0 chr3 58016992 58017102 -101582681 - B1F1 SINE Alu -34 115 1 4 1027 277 306 24 0 chr3 58017248 58017333 -101582450 + Tigger7 DNA MER2_type 32 118 -2373 4 1027 29 84 0 0 chr3 58017347 58017418 -101582365 + AT_rich Low_complexity Low_complexity 1 71 0 4 1027 302 239 164 55 chr3 58017428 58017574 -101582209 - RSINE1 SINE B4 0 165 4 4 1027 4924 111 12 50 chr3 58017668 58018429 -101581354 - L1_Mus3 LINE L1 0 6638 5907 4 1027 590 79 0 0 chr3 58018432 58018508 -101581275 + Lx LINE L1 5832 5907 -747 4 1027 1650 82 20 21 chr3 58018508 58018917 -101580866 - RLTR1C LTR ERV1 -133 491 1 4 1027 29758 128 13 10 chr3 58018922 58024418 -101575365 - L1VL2 LINE L1 0 5883 375 4 1027 287 228 137 10 chr3 58024424 58024526 -101575257 + Tigger7 DNA MER2_type 2352 2466 -25 4 1027 308 290 0 0 chr3 58024937 58025006 -101574777 + ID4_ SINE ID 2 70 -13 4 1027 827 294 155 6 chr3 58026081 58026416 -101573367 + Lx8 LINE L1 6841 7225 -248 4 1027 231 274 83 0 chr3 58026424 58026508 -101573275 + RMER15 LTR ERVL 371 461 -114 5 1027 237 108 0 0 chr3 58026512 58026549 -101573234 + (CA)n Simple_repeat Simple_repeat 2 38 0 5 1027 5957 105 31 18 chr3 58026680 58027556 -101572227 + RMER17D LTR ERVK 1 887 -2 5 1027 679 210 32 0 chr3 58027650 58027774 -101572009 + ID_B1 SINE B4 83 210 -14 5 1027 585 0 0 0 chr3 58027774 58027839 -101571944 + (GA)n Simple_repeat Simple_repeat 2 66 0 5 1027 239 343 30 0 chr3 58027855 58027922 -101571861 + ID_B1 SINE B4 81 149 -75 5 1027 807 186 238 13 chr3 58027944 58028259 -101571524 + MTD LTR MaLR 34 419 0 5 1027 254 362 97 71 chr3 58028500 58028851 -101570932 + L4 LINE RTE 1185 1544 -485 5 1027 1393 136 23 5 chr3 58028974 58029189 -101570594 - URR1B DNA MER1_type 0 225 7 5 1027 273 109 0 0 chr3 58029914 58029960 -101569823 + (TG)n Simple_repeat Simple_repeat 2 47 0 5 1027 270 267 101 25 chr3 58030024 58030143 -101569640 - RSINE1 SINE B4 -35 130 3 6 1027 207 0 0 0 chr3 58031848 58031871 -101567912 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 6 1027 1253 144 9 38 chr3 58032584 58032794 -101566989 - Lx3C LINE L1 -7 6969 6766 6 1027 3835 229 106 0 chr3 58032903 58033174 -101566609 + Lx6 LINE L1 6458 6737 -723 6 1027 213 39 0 0 chr3 58033174 58033200 -101566583 + (GA)n Simple_repeat Simple_repeat 1 26 0 6 1027 3835 229 106 0 chr3 58033200 58033778 -101566005 + Lx6 LINE L1 6738 7396 -64 6 1027 243 0 0 0 chr3 58033778 58033805 -101565978 + (GA)n Simple_repeat Simple_repeat 2 28 0 6 1027 379 216 142 87 chr3 58033852 58034035 -101565748 - ORSL DNA Tip100 0 275 83 6 1027 225 246 138 52 chr3 58034040 58034156 -101565627 + B1F SINE Alu 20 145 -4 6 1027 416 325 33 0 chr3 58036335 58036455 -101563328 + B1F SINE Alu 19 142 -7 6 1027 22 0 0 0 chr3 58036761 58036783 -101563000 + AT_rich Low_complexity Low_complexity 1 22 0 6 1027 440 295 77 60 chr3 58036882 58037167 -101562616 + B4A SINE B4 3 292 0 7 1027 180 0 0 0 chr3 58037230 58037250 -101562533 + (CA)n Simple_repeat Simple_repeat 1 20 0 7 1027 290 151 0 17 chr3 58037593 58037699 -101562084 - B2_Mm2 SINE B2 -1 194 47 7 1027 1245 109 29 0 chr3 58037765 58037939 -101561844 - B2_Mm2 SINE B2 -14 181 3 7 1027 566 257 6 0 chr3 58038362 58038537 -101561246 + (TA)n Simple_repeat Simple_repeat 2 177 0 7 1027 504 200 15 7 chr3 58038558 58038694 -101561089 + (TA)n Simple_repeat Simple_repeat 2 138 0 7 1027 462 241 241 0 chr3 58039947 58040063 -101559720 + B3A SINE B2 4 147 -51 7 1027 252 0 0 0 chr3 58040076 58040104 -101559679 + (CA)n Simple_repeat Simple_repeat 2 29 0 7 1027 488 289 84 66 chr3 58040758 58041077 -101558706 - MTEb LTR MaLR -5 374 38 7 1027 328 165 275 0 chr3 58042167 58042258 -101557525 + PB1D10 SINE Alu 1 116 -1 7 1027 838 287 97 100 chr3 58042633 58043013 -101556770 - MTE2a LTR MaLR 0 379 1 7 1027 1517 258 42 22 chr3 58043063 58043424 -101556359 + ORR1D2 LTR MaLR 1 368 -2 8 1027 392 250 283 9 chr3 58043728 58043954 -101555829 + RMER15 LTR ERVL 273 560 -15 8 1027 275 280 70 11 chr3 58044012 58044031 -101555752 + PB1D7 SINE Alu 1 63 -86 8 1027 333 237 0 13 chr3 58044031 58044108 -101555675 + ID_B1 SINE B4 101 176 -48 8 1027 275 280 70 11 chr3 58044108 58044121 -101555662 + PB1D7 SINE Alu 64 115 -34 8 1027 214 294 59 0 chr3 58044444 58044495 -101555288 + B1F1 SINE Alu 3 56 -93 8 1027 729 122 51 51 chr3 58044516 58044654 -101555129 + Lx4A LINE L1 6919 7056 -2 8 1027 23 0 0 0 chr3 58044654 58044677 -101555106 + AT_rich Low_complexity Low_complexity 1 23 0 8 1027 281 289 175 0 chr3 58045131 58045228 -101554555 - PB1D7 SINE Alu -6 114 1 8 1027 239 351 0 0 chr3 58045485 58045559 -101554224 + PB1D10 SINE Alu 8 81 -36 8 1027 760 173 38 60 chr3 58045946 58046130 -101553653 + Lx6 LINE L1 5161 5340 -540 8 1027 8940 196 19 39 chr3 58046122 58048102 -101551681 + Lx6 LINE L1 5499 7452 -8 8 1027 229 300 36 91 chr3 58048243 58048270 -101551513 + MT2B2 LTR ERVL 138 158 -426 9 1027 447 284 5 0 chr3 58048270 58048371 -101551412 + PB1D10 SINE Alu 1 105 -15 9 1027 451 325 25 0 chr3 58048504 58048624 -101551159 + RSINE1 SINE B4 2 124 -41 9 1027 351 0 0 0 chr3 58048626 58048665 -101551118 + (CA)n Simple_repeat Simple_repeat 2 40 0 9 1027 487 282 121 0 chr3 58048737 58048861 -101550922 + B1_Mur1 SINE Alu 2 140 -9 9 1027 228 135 0 0 chr3 58048862 58048899 -101550884 + (TGAA)n Simple_repeat Simple_repeat 1 37 0 9 1027 209 43 62 21 chr3 58048993 58049041 -101550742 + (TA)n Simple_repeat Simple_repeat 2 51 0 9 1027 759 276 0 0 chr3 58050120 58050272 -101549511 + B3A SINE B2 3 154 -44 9 1027 339 113 0 0 chr3 58050274 58050336 -101549447 + (CA)n Simple_repeat Simple_repeat 1 62 0 9 1027 727 213 0 0 chr3 58050348 58050475 -101549308 + B1_Mur1 SINE Alu 23 149 0 9 1027 717 208 0 0 chr3 58050981 58051111 -101548672 - B1_Mur4 SINE Alu -4 146 17 1 1027 218 309 122 10 chr3 58051127 58051139 -101548644 - 7SLRNA srpRNA srpRNA -202 112 4 1 1027 406 267 35 0 chr3 58051139 58051225 -101548558 - ID_B1 SINE B4 -50 174 86 1 1027 479 188 99 0 chr3 58051630 58051731 -101548052 + PB1D10 SINE Alu 7 117 0 1 1027 296 257 13 51 chr3 58052449 58052527 -101547256 + PB1D10 SINE Alu 22 96 -21 1 1027 279 103 69 0 chr3 58052886 58052944 -101546839 - MusHAL1 LINE L1 -1864 848 787 1 1027 6125 70 1 11 chr3 58052944 58053057 -101546726 + L1Md_F2 LINE L1 5816 5928 -654 1 1027 2842 94 43 8 chr3 58053057 58053454 -101546329 + RLTR10A LTR ERVK 1 411 0 1 1027 6125 70 1 11 chr3 58053454 58054101 -101545682 + L1Md_F2 LINE L1 5929 6569 -13 1 1027 185 59 0 56 chr3 58054332 58054368 -101545415 + (TTTTG)n Simple_repeat Simple_repeat 1 34 0 1 1027 234 304 23 132 chr3 58054907 58055036 -101544747 + PB1D10 SINE Alu 2 116 -1 1 1027 357 161 35 0 chr3 58055170 58055257 -101544526 + (TA)n Simple_repeat Simple_repeat 1 90 0 1 1027 289 250 0 0 chr3 58055267 58055327 -101544456 + B1F1 SINE Alu 88 147 -2 1 1027 21 0 0 0 chr3 58055327 58055348 -101544435 + AT_rich Low_complexity Low_complexity 1 21 0 1 1027 247 302 23 85 chr3 58055561 58055691 -101544092 - L1MA9 LINE L1 -34 6278 6157 1 1027 240 305 0 0 chr3 58055747 58055842 -101543941 + (TCTCTG)n Simple_repeat Simple_repeat 5 99 0 1 1027 330 247 0 0 chr3 58055842 58056020 -101543763 + (TG)n Simple_repeat Simple_repeat 1 178 0 1 1027 230 260 0 12 chr3 58056024 58056195 -101543588 + (TCTCTG)n Simple_repeat Simple_repeat 4 172 0 1 1027 225 88 250 0 chr3 58056196 58056332 -101543451 + (CCTG)n Simple_repeat Simple_repeat 1 170 0 1 1027 485 268 2 7 chr3 58056286 58056719 -101543064 + (TCTCTG)n Simple_repeat Simple_repeat 1 430 0 1 1027 210 45 0 153 chr3 58056723 58056854 -101542929 + (CTGTG)n Simple_repeat Simple_repeat 5 115 0 1 1027 409 274 14 6 chr3 58056857 58057216 -101542567 + (TCTCTG)n Simple_repeat Simple_repeat 1 362 0 1 1027 443 307 11 0 chr3 58057235 58057461 -101542322 + (GCCTAA)n Simple_repeat Simple_repeat 1 228 0 1 1027 455 248 10 19 chr3 58057485 58057588 -101542195 + RSINE1 SINE B4 35 136 -29 1 1027 1424 263 119 18 chr3 58057630 58058237 -101541546 - L1MA9 LINE L1 -169 6143 5476 1 1027 432 0 0 0 chr3 58058787 58058835 -101540948 + (TC)n Simple_repeat Simple_repeat 1 48 0 1 1027 210 161 35 18 chr3 58060063 58060120 -101539663 + T-rich Low_complexity Low_complexity 3 60 0 1 1027 432 228 2 14 chr3 58060881 58060989 -101538794 - B1F SINE Alu 0 120 14 1 1027 247 210 48 0 chr3 58060942 58061004 -101538779 - B4A SINE B4 -147 145 81 1 1027 210 37 0 0 chr3 58061151 58061178 -101538605 + (CA)n Simple_repeat Simple_repeat 2 28 0 1 1027 249 298 0 0 chr3 58061423 58061480 -101538303 + polypurine Low_complexity Low_complexity 2 58 0 1 1027 386 250 0 0 chr3 58061546 58061622 -101538161 - ID4 SINE ID -4 79 4 1 1027 22 0 0 0 chr3 58061646 58061668 -101538115 + AT_rich Low_complexity Low_complexity 1 22 0 1 1027 549 249 72 42 chr3 58061685 58061878 -101537905 - Lx8 LINE L1 -44 7429 7231 1 1027 215 215 15 0 chr3 58061888 58061953 -101537830 + GA-rich Low_complexity Low_complexity 1 66 0 1 1027 1149 204 32 0 chr3 58061973 58062193 -101537590 - Lx8 LINE L1 -234 7239 7013 1 1027 615 78 0 0 chr3 58062193 58062283 -101537500 + (TG)n Simple_repeat Simple_repeat 2 91 0 1 1027 1424 236 28 8 chr3 58062475 58062838 -101536945 + MT2A LTR ERVL 3 372 -161 1 1027 1365 271 115 16 chr3 58063094 58063702 -101536081 - L1MA7 LINE L1 -366 5925 5234 1 1027 261 179 0 0 chr3 58063702 58063786 -101535997 + (TAGA)n Simple_repeat Simple_repeat 3 86 0 1 1027 335 297 71 67 chr3 58063792 58064045 -101535738 - L1MA7 LINE L1 -651 5196 4943 1 1027 1551 151 16 21 chr3 58064053 58064592 -101535191 - RLTR1D LTR ERV1 0 605 1 1 128 4719 183 113 10 chr3 58064597 58065981 -101533802 - L1_Mm LINE L1 0 5886 4168 1 1028 1353 100 25 46 chr3 58065981 58066221 -101533562 - L1_Mus4 LINE L1 0 6636 6402 1 1028 4536 255 208 19 chr3 58066221 58067024 -101532759 - L1_Mm LINE L1 -1719 4167 3286 1 1028 567 269 7 7 chr3 58067103 58067238 -101532545 - RSINE1 SINE B4 -21 144 10 1 1028 216 200 0 0 chr3 58067789 58067839 -101531944 + T-rich Low_complexity Low_complexity 1 50 0 1 1028 1144 95 0 0 chr3 58067841 58067989 -101531794 - B1_Mus1 SINE Alu 0 148 1 1 1028 5561 70 1 3 chr3 58068008 58068720 -101531063 - L1_Mus2 LINE L1 0 6566 5856 1 1028 206 173 13 0 chr3 58068749 58068824 -101530959 + T-rich Low_complexity Low_complexity 3 78 0 1 1028 1089 88 0 20 chr3 58068826 58068977 -101530806 - B1_Mus1 SINE Alu 0 148 1 1 1028 389 233 24 79 chr3 58068987 58069113 -101530670 - B1F SINE Alu 0 149 31 1 1028 221 176 59 0 chr3 58069386 58069437 -101530346 - PB1D9 SINE Alu -1 119 66 1 1028 542 225 9 0 chr3 58069393 58069504 -101530279 - ID_B1 SINE B4 -8 216 105 1 1028 218 385 31 0 chr3 58070382 58070478 -101529305 + PB1D10 SINE Alu 2 100 -17 1 1028 423 0 0 0 chr3 58070479 58070526 -101529257 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 1028 395 354 143 16 chr3 58070533 58070791 -101528992 + B4A SINE B4 2 292 0 1 1028 341 93 19 0 chr3 58070822 58070876 -101528907 + (CATA)n Simple_repeat Simple_repeat 4 58 0 1 1028 300 275 50 0 chr3 58072447 58072527 -101527256 + B1F SINE Alu 10 93 -56 1 1028 595 295 0 0 chr3 58072638 58072777 -101527006 - B1F SINE Alu -9 140 2 1 1028 365 328 35 0 chr3 58072929 58073045 -101526738 - B1F SINE Alu -29 120 1 1 1028 25 0 0 0 chr3 58073045 58073070 -101526713 + AT_rich Low_complexity Low_complexity 1 25 0 1 1028 1980 213 71 17 chr3 58073282 58073746 -101526037 - L1MD1 LINE L1 -280 5962 5416 1 1028 2299 294 52 93 chr3 58073735 58074053 -101525730 - L1_Rod LINE L1 -1145 4735 4387 1 1028 342 0 0 0 chr3 58074053 58074091 -101525692 + (TCCC)n Simple_repeat Simple_repeat 2 39 0 1 1028 3234 260 43 64 chr3 58074091 58074995 -101524788 - L1_Rod LINE L1 -1494 4386 3567 1 1028 233 0 62 0 chr3 58074995 58075027 -101524756 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 1 1028 3234 255 42 60 chr3 58075027 58075488 -101524295 - L1_Rod LINE L1 -2266 3581 3120 1 1028 38759 30 1 0 chr3 58075472 58082117 -101517666 - L1Md_T LINE L1 0 6585 1 1 1028 388 226 17 42 chr3 58082118 58082238 -101517545 - L1M2 LINE L1 -2957 3186 3070 1 1028 266 129 27 54 chr3 58082243 58082317 -101517466 - L1_Rod LINE L1 -2921 2926 2855 1 1028 658 249 100 5 chr3 58082504 58082694 -101517089 + MTD LTR MaLR 3 210 -209 1 1028 1017 277 29 11 chr3 58082717 58083198 -101516585 + Lx6 LINE L1 5983 6723 -737 1 1028 351 288 122 42 chr3 58083238 58083452 -101516331 + RLTR12B LTR ERVK 19 249 -279 1 1028 2012 254 20 15 chr3 58083674 58084276 -101515507 + Lx6 LINE L1 6455 7433 -27 1 1028 609 83 0 0 chr3 58084353 58084437 -101515346 + (GGGA)n Simple_repeat Simple_repeat 2 85 0 1 1028 263 211 18 0 chr3 58084460 58084517 -101515266 + MTD LTR MaLR 348 405 -14 1 1028 732 212 104 15 chr3 58084527 58084728 -101515055 - L1_Rod LINE L1 -3095 2752 2534 1 1028 471 48 0 0 chr3 58084728 58084790 -101514993 + (TG)n Simple_repeat Simple_repeat 2 63 0 1 1028 2125 206 115 55 chr3 58084832 58085500 -101514283 - Lx9 LINE L1 -1 7643 6936 1 1028 1799 248 79 81 chr3 58085495 58086289 -101513494 - L1_Rod LINE L1 -3791 2056 1264 1 1028 206 62 31 0 chr3 58086305 58086337 -101513446 + (TC)n Simple_repeat Simple_repeat 1 33 0 1 1028 207 0 0 0 chr3 58086433 58086456 -101513327 + (T)n Simple_repeat Simple_repeat 1 23 0 1 1028 764 200 14 0 chr3 58086465 58086605 -101513178 - B1_Mur1 SINE Alu -7 142 1 1 1028 687 128 0 0 chr3 58086607 58086716 -101513067 + (TCC)n Simple_repeat Simple_repeat 3 111 0 1 1028 8224 205 67 21 chr3 58086718 58088496 -101511287 - Lx6 LINE L1 -1 7459 5600 1 1028 3263 63 2 0 chr3 58088496 58088895 -101510888 + MTB LTR MaLR 1 400 0 1 1028 2654 162 38 24 chr3 58088895 58089076 -101510707 - Lx6 LINE L1 -284 5596 5405 1 1028 1658 177 75 37 chr3 58089067 58089443 -101510340 - Lx6 LINE L1 -685 5195 4806 1 1028 243 0 0 0 chr3 58089681 58089708 -101510075 + (T)n Simple_repeat Simple_repeat 1 27 0 1 1028 410 277 99 50 chr3 58089746 58090008 -101509775 - RLTR16 LTR ERVK -207 298 24 1 1028 8715 132 48 12 chr3 58090024 58091541 -101508242 - L1_Mur3 LINE L1 -1074 4806 3236 1 1028 2174 136 54 38 chr3 58091539 58091982 -101507801 + L1_Mur3 LINE L1 1685 2134 -3746 1 1028 886 114 0 12 chr3 58091980 58092140 -101507643 - L1_Mur3 LINE L1 -2677 3203 3046 1 1028 673 209 205 16 chr3 58092143 58092333 -101507450 - URR1A DNA MER1_type 0 226 1 1 1028 295 143 0 20 chr3 58092343 58092393 -101507390 - L1_Mur1 LINE L1 -2837 3049 3001 1 1028 3020 174 42 50 chr3 58092385 58093144 -101506639 - L1_Mur3 LINE L1 -2723 3124 2337 1 1028 8118 58 2 2 chr3 58093168 58094163 -101505620 - L1Md_F2 LINE L1 0 6582 5588 1 1028 909 57 0 0 chr3 58094172 58094278 -101505505 - U6 snRNA snRNA 0 107 2 1 1028 914 187 20 25 chr3 58094279 58094462 -101505321 - L1_Mur3 LINE L1 -3529 2351 2172 1 1028 990 126 0 19 chr3 58094462 58094616 -101505167 - L1_Mus2 LINE L1 -2 6564 6414 1 1028 914 187 20 25 chr3 58094616 58094635 -101505148 - L1_Mur3 LINE L1 -3709 2171 2151 1 1028 2706 196 67 53 chr3 58094624 58095883 -101503900 - L1_Mur3 LINE L1 -4149 1731 452 1 1028 22 0 0 0 chr3 58095933 58095955 -101503828 + AT_rich Low_complexity Low_complexity 1 22 0 1 1028 202 194 0 0 chr3 58096049 58096085 -101503698 + CT-rich Low_complexity Low_complexity 3 38 0 1 1028 228 367 14 3 chr3 58096369 58096503 -101503280 + MIRm SINE MIR 37 172 -96 1 1028 318 313 179 5 chr3 58096784 58096996 -101502787 - MER58B DNA MER1_type -42 299 51 1 1028 360 316 88 0 chr3 58097054 58097190 -101502593 + B1F1 SINE Alu 2 149 0 1 1028 540 239 49 28 chr3 58099211 58099353 -101500430 + B1F SINE Alu 1 145 -4 1 1028 237 231 19 0 chr3 58099419 58099471 -101500312 + GA-rich Low_complexity Low_complexity 4 56 0 1 1028 327 321 110 6 chr3 58099651 58099814 -101499969 + ID_B1 SINE B4 5 184 -40 1 1028 343 277 0 50 chr3 58099735 58099834 -101499949 + PB1D10 SINE Alu 24 117 0 1 1028 1194 92 0 0 chr3 58100181 58100574 -101499209 + (TG)n Simple_repeat Simple_repeat 1 393 0 1 1028 362 279 35 35 chr3 58101680 58101795 -101497988 + B1_Mm SINE Alu 1 115 -32 1 1028 237 33 0 0 chr3 58101883 58101913 -101497870 + (CAAA)n Simple_repeat Simple_repeat 3 32 0 1 1028 2962 134 10 43 chr3 58102399 58102890 -101496893 + MT2C_Mm LTR ERVL 1 475 0 1 1028 212 0 36 0 chr3 58103240 58103268 -101496515 + (TTTTG)n Simple_repeat Simple_repeat 4 32 0 1 1028 295 267 31 113 chr3 58103268 58103365 -101496418 - PB1D10 SINE Alu -12 105 17 2 1028 1973 198 39 19 chr3 58103378 58103791 -101495992 - MTC LTR MaLR 0 421 1 2 1028 207 0 0 0 chr3 58103912 58103935 -101495848 + (TGAA)n Simple_repeat Simple_repeat 3 25 0 2 1028 512 283 22 0 chr3 58104183 58104321 -101495462 - B1F1 SINE Alu -6 143 3 2 1028 418 233 8 49 chr3 58104465 58104587 -101495196 - L1MC LINE L1 -845 5301 5185 2 1028 772 169 44 0 chr3 58105676 58105812 -101493971 - B1_Mus2 SINE Alu 0 147 6 2 1028 429 191 109 45 chr3 58106055 58106166 -101493617 + PB1D10 SINE Alu 2 126 -1 2 1028 541 248 71 21 chr3 58106332 58106472 -101493311 - B1F SINE Alu -2 147 1 2 1028 501 235 67 0 chr3 58107335 58107454 -101492329 - B1F SINE Alu -13 136 10 2 1028 525 191 0 0 chr3 58107482 58107587 -101492196 + A-rich Low_complexity Low_complexity 1 105 0 2 1028 261 0 0 0 chr3 58108113 58108142 -101491641 + (A)n Simple_repeat Simple_repeat 1 29 0 2 1028 318 50 0 0 chr3 58109101 58109141 -101490642 + (TG)n Simple_repeat Simple_repeat 2 41 0 2 1028 285 325 103 0 chr3 58109142 58109259 -101490524 - RSINE1 SINE B4 -20 145 17 2 1028 351 246 119 0 chr3 58109390 58109508 -101490275 - ID_B1 SINE B4 -2 222 91 2 1028 249 243 75 28 chr3 58109510 58109616 -101490167 - L1M5 LINE L1 -281 5897 5787 2 1028 300 303 40 24 chr3 58109743 58109868 -101489915 - L1M5 LINE L1 -601 5578 5452 2 1028 687 217 43 0 chr3 58109907 58110045 -101489738 - B1F SINE Alu -1 148 5 2 1028 343 317 70 47 chr3 58110053 58110268 -101489515 - L1MC LINE L1 -941 5205 4986 2 1028 848 168 0 0 chr3 58110660 58110797 -101488986 + B1F SINE Alu 7 143 -6 2 1028 369 289 19 28 chr3 58111361 58111468 -101488315 + B1F SINE Alu 1 106 -43 2 1028 459 0 0 0 chr3 58111484 58111535 -101488248 + (TTTA)n Simple_repeat Simple_repeat 2 52 0 2 1028 29 47 0 0 chr3 58111577 58111620 -101488163 + AT_rich Low_complexity Low_complexity 1 43 0 2 1028 7046 69 33 3 chr3 58111620 58112570 -101487213 - Lx3_Mus LINE L1 0 7009 6032 2 1028 22 0 0 0 chr3 58112633 58112655 -101487128 + AT_rich Low_complexity Low_complexity 1 22 0 2 1028 323 264 273 0 chr3 58112940 58113050 -101486733 - B1F2 SINE Alu -8 141 2 2 1028 276 307 114 91 chr3 58114537 58114791 -101484992 + ORR1E LTR MaLR 96 355 -4 2 1028 216 0 0 0 chr3 58114942 58114966 -101484817 + (TG)n Simple_repeat Simple_repeat 2 25 0 2 1028 405 54 0 0 chr3 58115645 58115701 -101484082 + (TG)n Simple_repeat Simple_repeat 1 56 0 2 1028 2887 72 31 8 chr3 58116023 58116414 -101483369 - MTB LTR MaLR 0 400 1 2 1028 664 306 156 19 chr3 58116652 58117069 -101482714 - Lx8 LINE L1 -288 7185 6712 2 1028 774 192 0 8 chr3 58117154 58117285 -101482498 - B1_Mur1 SINE Alu -15 134 5 2 1028 838 328 97 26 chr3 58117456 58117879 -101481904 + LTR33A LTR ERVL 54 506 -14 2 1028 486 296 26 0 chr3 58118065 58118180 -101481603 - B1F SINE Alu 0 149 32 2 1028 470 230 11 22 chr3 58118191 58118280 -101481503 - B1_Mur3 SINE Alu -56 93 6 2 1028 280 315 0 119 chr3 58118199 58118300 -101481483 - MT2B LTR ERVL -360 241 153 2 1028 246 32 0 0 chr3 58118368 58118399 -101481384 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2 1028 328 337 72 18 chr3 58120410 58120576 -101479207 + Arthur1A DNA Tip100 2 176 -1 2 1028 217 289 148 0 chr3 58121023 58121100 -101478683 + MIRm SINE MIR 129 275 -1 2 1028 273 216 0 0 chr3 58121100 58121151 -101478632 + L2c LINE L2 3334 3384 -3 2 1028 392 245 143 5 chr3 58121254 58121443 -101478340 - ID_B1 SINE B4 -9 215 1 2 1028 406 262 14 70 chr3 58123488 58123632 -101476151 + L1MB8 LINE L1 5494 5630 -544 2 1028 1262 73 56 11 chr3 58123644 58123823 -101475960 + B2_Mm2 SINE B2 1 187 -8 2 1028 271 204 0 0 chr3 58123824 58123868 -101475915 + B1F1 SINE Alu 78 121 -28 2 1028 240 35 0 0 chr3 58123880 58123909 -101475874 + (CAAA)n Simple_repeat Simple_repeat 1 29 0 2 1028 1319 273 47 11 chr3 58123910 58124358 -101475425 + L1MB8 LINE L1 5669 6132 -46 2 1028 501 239 0 0 chr3 58124445 58124537 -101475246 + PB1D10 SINE Alu 13 104 -13 2 1028 184 140 19 39 chr3 58124623 58124675 -101475108 + GA-rich Low_complexity Low_complexity 4 54 0 2 1028 296 331 139 20 chr3 58125358 58125509 -101474274 - MIRb SINE MIR -64 204 36 2 1028 269 284 111 33 chr3 58125520 58125673 -101474110 - MIR SINE MIR 0 262 98 2 1028 201 39 0 0 chr3 58125697 58125723 -101474060 + (TTGG)n Simple_repeat Simple_repeat 4 29 0 2 1028 368 195 69 0 chr3 58125728 58125815 -101473968 - PB1D10 SINE Alu 0 117 25 2 1028 284 296 60 71 chr3 58126184 58126366 -101473417 + MLT1J LTR MaLR 16 195 -317 2 1028 238 284 208 40 chr3 58126378 58126580 -101473203 + MLT1J LTR MaLR 227 462 -50 2 1028 492 62 0 0 chr3 58126663 58126727 -101473056 + (TG)n Simple_repeat Simple_repeat 2 65 0 2 1028 240 360 17 51 chr3 58126774 58126891 -101472892 - PB1D7 SINE Alu -7 113 1 2 1028 694 278 14 0 chr3 58126891 58126975 -101472808 - B4 SINE B4 -205 87 2 2 1028 325 247 0 110 chr3 58127267 58127376 -101472407 + Lx4B LINE L1 6165 6261 -797 2 1028 505 253 204 12 chr3 58127356 58127596 -101472187 + Lx2B LINE L1 6707 6992 -8 2 1028 408 263 86 124 chr3 58128072 58128407 -101471376 - MLT1C LTR MaLR -71 396 1 2 1028 428 394 8 0 chr3 58128460 58128587 -101471196 + B1F1 SINE Alu 2 129 -20 2 1028 531 269 100 51 chr3 58128744 58129219 -101470564 + L1M2 LINE L1 2807 3299 -2847 2 1028 459 0 0 0 chr3 58129375 58129426 -101470357 + (GGGA)n Simple_repeat Simple_repeat 3 53 0 2 1028 1088 165 24 28 chr3 58129427 58129639 -101470144 + B3 SINE B2 4 214 -2 2 1028 186 43 0 0 chr3 58129788 58129811 -101469972 + (GTTTG)n Simple_repeat Simple_repeat 2 24 0 2 1028 255 31 0 0 chr3 58129825 58129857 -101469926 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 2 1028 959 250 58 4 chr3 58129953 58130178 -101469605 - MT2A LTR ERVL -295 238 2 2 1028 609 296 14 0 chr3 58130237 58130379 -101469404 + RSINE1 SINE B4 3 146 -19 2 1028 315 0 0 0 chr3 58130382 58130417 -101469366 + (CA)n Simple_repeat Simple_repeat 2 36 0 2 1028 1844 89 86 0 chr3 58131172 58131452 -101468331 + ORR1A2 LTR MaLR 16 319 -8 2 1028 809 324 107 29 chr3 58131486 58131905 -101467878 - LTR16B1 LTR ERVL -8 472 21 2 1028 205 237 0 0 chr3 58132404 58132442 -101467341 + (TCG)n Simple_repeat Simple_repeat 3 40 0 2 1028 779 257 54 4 chr3 58132986 58133171 -101466612 + B3 SINE B2 8 201 -15 2 1028 1087 15 15 0 chr3 58133172 58133309 -101466474 + (TAGA)n Simple_repeat Simple_repeat 2 140 0 2 1028 593 291 48 22 chr3 58133322 58133550 -101466233 + L1M2 LINE L1 5544 5777 -514 2 1028 231 57 0 0 chr3 58133550 58133585 -101466198 + B3A SINE B2 1 35 -163 2 1028 840 221 55 15 chr3 58133657 58133859 -101465924 + B3 SINE B2 1 210 -6 2 1028 1061 253 144 58 chr3 58134088 58134470 -101465313 - MLT1F1 LTR MaLR -2 567 153 2 1028 262 264 97 21 chr3 58134869 58134938 -101464845 - ID_B1 SINE B4 -1 223 148 2 1028 1772 137 133 84 chr3 58134938 58135175 -101464608 + RLTR24 LTR ERV1 1 278 -251 2 1028 1170 82 0 0 chr3 58135175 58135322 -101464461 + B1_Mus1 SINE Alu 2 148 0 2 1028 1772 137 133 84 chr3 58135322 58135513 -101464270 + RLTR24 LTR ERV1 279 450 -79 2 1028 744 134 0 17 chr3 58135513 58135643 -101464140 + B1_Mur3 SINE Alu 1 120 0 2 1028 1654 48 5 0 chr3 58135684 58135893 -101463890 - MTA_Mm LTR MaLR 0 396 187 2 1028 2544 43 9 47 chr3 58135883 58136226 -101463557 - MT2C_Mm LTR ERVL -145 330 1 2 1028 252 61 0 0 chr3 58136226 58136257 -101463526 + RLTR24 LTR ERV1 497 527 -2 2 1028 448 271 40 54 chr3 58136259 58136407 -101463376 - ID_B1 SINE B4 -74 150 5 2 1028 200 132 0 26 chr3 58136457 58136496 -101463287 + T-rich Low_complexity Low_complexity 5 42 0 2 1028 1199 35 0 7 chr3 58136666 58136802 -101462981 + B1_Mm SINE Alu 1 136 -11 2 1028 206 32 32 0 chr3 58136802 58136833 -101462950 + (CAAAA)n Simple_repeat Simple_repeat 4 35 0 2 1028 214 233 0 0 chr3 58137136 58137179 -101462604 + G-rich Low_complexity Low_complexity 2 44 0 2 1028 274 267 5 15 chr3 58137186 58137387 -101462396 + GA-rich Low_complexity Low_complexity 1 198 0 2 1028 466 258 18 48 chr3 58137585 58137715 -101462068 - PB1D10 SINE Alu -9 141 11 2 1028 215 265 0 0 chr3 58139802 58139851 -101459932 + GA-rich Low_complexity Low_complexity 4 52 0 2 1028 411 259 35 9 chr3 58141125 58141238 -101458545 + RSINE1 SINE B4 5 120 -45 2 1028 7305 60 2 7 chr3 58141239 58142475 -101457308 + L1_Mus2 LINE L1 5337 6566 0 2 1028 261 296 0 0 chr3 58142511 58142565 -101457218 + RSINE1 SINE B4 109 162 -3 2 1028 180 0 0 0 chr3 58143272 58143292 -101456491 + (TTTTC)n Simple_repeat Simple_repeat 2 21 0 2 1028 588 287 15 30 chr3 58143582 58143783 -101456000 + B3A SINE B2 1 198 0 2 1028 1221 79 6 33 chr3 58143796 58143979 -101455804 - B2_Mm1t SINE B2 -5 188 11 2 1028 685 254 74 17 chr3 58144168 58144369 -101455414 + B3 SINE B2 1 189 -6 2 1028 2876 286 99 16 chr3 58144620 58145761 -101454022 + Lx8 LINE L1 6233 7468 -5 2 1028 309 109 0 0 chr3 58146361 58146407 -101453376 + (TTG)n Simple_repeat Simple_repeat 2 47 0 2 1028 2020 180 84 58 chr3 58147509 58148023 -101451760 + RLTR11A2 LTR ERVK 1 527 0 2 1028 765 167 27 40 chr3 58148361 58148511 -101451272 + B1_Mur2 SINE Alu 1 148 -1 2 1028 234 297 64 69 chr3 58148644 58148832 -101450951 + MIRc SINE MIR 62 248 -20 2 1028 203 250 31 0 chr3 58148968 58149032 -101450751 + (TTATA)n Simple_repeat Simple_repeat 4 69 0 2 1028 385 283 72 45 chr3 58149061 58149177 -101450606 - MER33 DNA MER1_type -94 230 111 2 1028 1432 55 11 5 chr3 58149177 58149361 -101450422 - B2_Mm2 SINE B2 -8 187 3 3 1028 385 283 72 45 chr3 58149361 58149466 -101450317 - MER33 DNA MER1_type -214 110 3 2 1028 3764 79 12 4 chr3 58149739 58150237 -101449546 + MT2B2 LTR ERVL 83 584 0 3 1028 521 341 65 42 chr3 58150347 58150702 -101449081 - MLT1A0 LTR MaLR -2 363 1 3 1028 28 0 0 0 chr3 58151210 58151238 -101448545 + AT_rich Low_complexity Low_complexity 1 28 0 3 1028 266 306 89 12 chr3 58151261 58151442 -101448341 - MIR SINE MIR -46 222 7 3 1028 25 0 0 0 chr3 58152273 58152298 -101447485 + AT_rich Low_complexity Low_complexity 1 25 0 3 1028 417 392 0 7 chr3 58152299 58152443 -101447340 + ID_B1 SINE B4 82 224 0 3 1028 240 111 0 0 chr3 58152670 58152706 -101447077 + (CACG)n Simple_repeat Simple_repeat 4 39 0 3 1028 4440 166 110 29 chr3 58152923 58153932 -101445851 - Lx4B LINE L1 -4 7054 5964 3 1028 321 273 58 0 chr3 58154176 58154315 -101445468 + Lx8 LINE L1 1162 1308 -6300 3 1028 232 292 0 0 chr3 58155115 58155204 -101444579 + L1_Mur3 LINE L1 1253 1341 -4539 3 1028 789 213 140 25 chr3 58155290 58155665 -101444118 + Lx8 LINE L1 1370 1775 -4105 3 1028 730 283 21 21 chr3 58155679 58155870 -101443913 - B3 SINE B2 -25 191 1 3 1028 233 321 25 0 chr3 58155878 58155959 -101443824 + Lx8 LINE L1 1768 1850 -4030 3 1028 1179 233 96 68 chr3 58156023 58156461 -101443322 + RLTR12B LTR ERVK 42 491 -37 3 1028 2081 255 50 26 chr3 58156531 58157227 -101442556 + Lx8 LINE L1 1939 2643 -3237 3 1028 225 0 0 0 chr3 58157227 58157252 -101442531 + (CA)n Simple_repeat Simple_repeat 2 26 0 3 1028 2081 255 50 26 chr3 58157252 58157296 -101442487 + Lx8 LINE L1 2644 2697 -3183 3 1028 265 281 10 10 chr3 58157287 58157384 -101442399 + L1_Mur1 LINE L1 4040 4136 -1750 3 1028 1093 91 0 0 chr3 58157402 58157545 -101442238 + B1_Mus2 SINE Alu 1 143 -4 3 1028 759 211 0 0 chr3 58157546 58157712 -101442071 + A-rich Low_complexity Low_complexity 1 166 0 3 1028 2150 297 52 27 chr3 58157712 58158740 -101441043 + Lx8 LINE L1 4647 5699 -181 3 1028 403 83 0 16 chr3 58158740 58158801 -101440982 + ORR1C2 LTR MaLR 2 61 -323 3 1028 2591 278 138 36 chr3 58158848 58159308 -101440475 + Lx8 LINE L1 6221 6704 -769 3 1028 189 74 0 0 chr3 58159308 58159335 -101440448 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3 1028 2591 278 138 36 chr3 58159335 58160010 -101439773 + Lx8 LINE L1 6705 7471 -2 3 1028 237 204 93 0 chr3 58161387 58161441 -101438342 + Tigger16a DNA Tigger 799 857 -76 3 1028 459 168 120 87 chr3 58161923 58162051 -101437732 + B1_Mur4 SINE Alu 2 118 -2 3 1028 4342 78 12 0 chr3 58162404 58162979 -101436804 + MT2B2 LTR ERVL 3 584 0 3 1028 617 256 45 49 chr3 58163081 58163290 -101436493 + B3A SINE B2 7 216 0 3 1028 575 245 173 15 chr3 58163661 58163997 -101435786 + L1M4 LINE L1 5417 5805 -379 3 1028 338 340 28 0 chr3 58164025 58164131 -101435652 + B1_Mm SINE Alu 1 109 -38 3 1028 263 265 118 0 chr3 58164123 58164191 -101435592 + B1F SINE Alu 74 149 0 3 1028 947 294 65 14 chr3 58164195 58164875 -101434908 + L1MB8 LINE L1 5188 5907 -271 3 1028 588 133 38 0 chr3 58164880 58164985 -101434798 + MT2C_Mm LTR ERVL 367 475 0 3 1028 25 0 0 0 chr3 58165097 58165122 -101434661 + AT_rich Low_complexity Low_complexity 1 25 0 3 1028 420 270 85 62 chr3 58165126 58165256 -101434527 + B3 SINE B2 81 213 -3 3 1028 2532 234 83 24 chr3 58165307 58166856 -101432927 + Lx9 LINE L1 4423 6090 -1554 3 1028 405 0 0 0 chr3 58166952 58166997 -101432786 + (CA)n Simple_repeat Simple_repeat 2 46 0 3 1028 456 241 122 41 chr3 58166997 58167126 -101432657 + Lx9 LINE L1 6340 6480 -1164 3 1028 1736 205 45 0 chr3 58167117 58167473 -101432310 + Lx9 LINE L1 7082 7453 -191 3 1028 383 67 66 22 chr3 58167493 58167584 -101432199 + (CAGAGA)n Simple_repeat Simple_repeat 3 97 0 3 1028 312 164 191 0 chr3 58167589 58167699 -101432084 + Lx9 LINE L1 7513 7643 -1 3 1028 1588 48 0 0 chr3 58167842 58168029 -101431754 + B2_Mm1a SINE B2 2 188 -5 3 1028 265 297 42 59 chr3 58168121 58168239 -101431544 + L2b LINE L2 3259 3374 -1 3 1028 567 326 23 23 chr3 58169070 58169290 -101430493 - ID_B1 SINE B4 0 224 5 3 1028 483 18 0 0 chr3 58169380 58169436 -101430347 + (TA)n Simple_repeat Simple_repeat 1 56 0 3 1028 309 213 27 0 chr3 58169518 58169593 -101430190 + B1F SINE Alu 73 149 0 3 1028 1399 63 25 41 chr3 58169610 58169807 -101429976 + B2_Mm2 SINE B2 1 194 -1 3 1028 1216 54 7 0 chr3 58169951 58170098 -101429685 + B1_Mus1 SINE Alu 1 148 0 3 1028 263 266 45 45 chr3 58170123 58170257 -101429526 - L1M5 LINE L1 -315 5858 5725 3 1028 1996 71 232 0 chr3 58170252 58170575 -101429208 - Lx LINE L1 -3 6651 6254 3 1028 1389 294 82 14 chr3 58170722 58171208 -101428575 - MLT1F1 LTR MaLR -6 563 45 3 1028 840 185 0 14 chr3 58171354 58171502 -101428281 - B1_Mur2 SINE Alu -2 147 2 3 1028 381 272 143 36 chr3 58171822 58171990 -101427793 + L1MC4a LINE L1 7441 7626 -416 3 1028 1117 120 0 0 chr3 58171991 58172158 -101427625 + B2_Mm2 SINE B2 3 169 -26 3 1028 1125 108 0 0 chr3 58172160 58172327 -101427456 + (GAAA)n Simple_repeat Simple_repeat 4 170 0 3 1028 594 265 32 0 chr3 58172359 58172544 -101427239 + L1MC4a LINE L1 7654 7844 -38 3 1028 330 245 102 54 chr3 58173322 58173469 -101426314 - MLT1F1 LTR MaLR -24 545 392 3 1028 328 352 24 0 chr3 58173538 58173663 -101426120 - MLT1F1 LTR MaLR -166 403 276 3 1028 333 0 0 0 chr3 58177063 58177100 -101422683 + (TG)n Simple_repeat Simple_repeat 2 38 0 3 1028 244 208 14 27 chr3 58177421 58177495 -101422288 + MER5C DNA MER1_type 83 155 -158 3 1028 2337 221 180 16 chr3 58177497 58178212 -101421571 - RMER1C Other Other -4 1338 336 3 1028 378 319 253 39 chr3 58178562 58179104 -101420679 - L4 LINE RTE -101 1928 1271 3 1028 24 67 0 0 chr3 58179516 58179561 -101420222 + AT_rich Low_complexity Low_complexity 1 45 0 3 1028 1313 90 16 21 chr3 58181175 58181368 -101418415 - B2_Mm1t SINE B2 0 193 2 3 1028 4692 65 3 3 chr3 58183157 58183741 -101416042 - MT2B2 LTR ERVL 0 584 1 3 1028 389 326 7 21 chr3 58183952 58184096 -101415687 + ID_B1 SINE B4 82 223 -1 3 1028 1288 101 0 6 chr3 58184267 58184446 -101415337 - B2_Mm2 SINE B2 -14 181 4 3 1028 198 0 0 0 chr3 58184468 58184490 -101415293 + (A)n Simple_repeat Simple_repeat 1 22 0 3 1028 246 281 0 0 chr3 58184919 58184983 -101414800 - ORR1E LTR MaLR 0 379 316 3 1028 216 0 0 0 chr3 58185004 58185028 -101414755 + (TTTTG)n Simple_repeat Simple_repeat 3 26 0 3 1028 610 210 128 11 chr3 58185028 58185264 -101414519 + MTD LTR MaLR 21 299 -122 3 1028 287 305 126 0 chr3 58185438 58185533 -101414250 + ID_B1 SINE B4 12 118 -106 3 1028 345 263 89 20 chr3 58186524 58186625 -101413158 - ID_B1 SINE B4 0 224 117 3 1028 817 233 147 14 chr3 58186658 58186884 -101412899 + B4 SINE B4 17 269 -23 3 1028 420 20 0 0 chr3 58186958 58187007 -101412776 + (TAA)n Simple_repeat Simple_repeat 1 49 0 3 1028 28 61 0 0 chr3 58187304 58187353 -101412430 + AT_rich Low_complexity Low_complexity 1 49 0 3 1028 541 319 91 14 chr3 58187353 58187639 -101412144 - ORR1E LTR MaLR -51 308 1 3 1028 243 258 0 0 chr3 58187962 58188024 -101411759 + L1M5 LINE L1 4888 4949 -1197 3 1028 260 261 0 14 chr3 58188040 58188110 -101411673 + ID_B1 SINE B4 102 170 -54 3 1028 389 309 0 0 chr3 58188129 58188223 -101411560 + RSINE1 SINE B4 4 97 -68 3 1028 629 312 58 65 chr3 58188349 58188404 -101411379 + L1M5 LINE L1 4943 4985 -1161 3 1028 393 257 8 50 chr3 58188404 58188523 -101411260 + PB1D10 SINE Alu 3 116 -1 3 1028 629 312 58 65 chr3 58188523 58188916 -101410867 + L1M5 LINE L1 4986 5388 -758 3 1028 335 281 60 17 chr3 58189175 58189291 -101410492 + B1F SINE Alu 1 121 -28 3 1028 408 202 72 31 chr3 58189195 58189292 -101410491 + ID_B1 SINE B4 100 200 -24 3 1028 207 100 0 0 chr3 58189486 58189516 -101410267 + (GGGA)n Simple_repeat Simple_repeat 4 33 0 3 1028 366 241 11 0 chr3 58189927 58190014 -101409769 + MT2B LTR ERVL 2 89 -444 3 1028 246 229 0 0 chr3 58190049 58190097 -101409686 + MT2B LTR ERVL 82 129 -404 3 1028 1149 243 24 84 chr3 58190113 58190495 -101409288 + MT2B LTR ERVL 241 599 -2 3 1028 1045 104 0 7 chr3 58190744 58190880 -101408903 + B1_Mus1 SINE Alu 2 137 -11 3 1028 456 19 0 0 chr3 58190880 58190933 -101408850 + (CA)n Simple_repeat Simple_repeat 2 54 0 3 1028 201 74 0 0 chr3 58191356 58191383 -101408400 + (GA)n Simple_repeat Simple_repeat 1 27 0 3 1028 803 252 0 18 chr3 58192589 58192755 -101407028 + B3A SINE B2 1 163 -35 3 1028 236 226 134 34 chr3 58192780 58192899 -101406884 - L1MC5 LINE L1 -49 7912 7782 3 1028 210 98 0 89 chr3 58192899 58192944 -101406839 + (TCTCTG)n Simple_repeat Simple_repeat 2 42 0 3 1028 485 154 13 0 chr3 58193028 58193106 -101406677 - ID4_ SINE ID -2 81 3 3 1028 313 318 91 0 chr3 58193117 58193227 -101406556 - PB1 SINE Alu -7 120 1 3 1028 269 224 0 0 chr3 58193294 58193343 -101406440 + B1_Mus2 SINE Alu 1 49 -98 3 1028 632 127 9 0 chr3 58193803 58193913 -101405870 + (GGGA)n Simple_repeat Simple_repeat 4 114 0 3 1028 260 369 24 30 chr3 58194033 58194198 -101405585 + MER5B DNA MER1_type 14 177 -1 3 128 4688 58 23 10 chr3 58195433 58196039 -101403744 + L1_Mus3 LINE L1 6022 6635 -3 3 1029 850 169 15 0 chr3 58197238 58197374 -101402409 + B1_Mur2 SINE Alu 1 138 -11 3 1029 192 77 0 0 chr3 58197375 58197401 -101402382 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 3 1029 456 323 35 17 chr3 58197540 58197753 -101402030 - MIRb SINE MIR -49 219 1 3 1029 296 113 41 27 chr3 58198040 58198113 -101401670 + CT-rich Low_complexity Low_complexity 6 79 0 3 1029 330 310 107 54 chr3 58198627 58198944 -101400839 - HAL1 LINE L1 -182 2325 1992 3 1029 7716 63 9 8 chr3 58198973 58200179 -101399604 - L1_Mus2 LINE L1 0 6566 5357 3 1029 459 0 0 0 chr3 58200250 58200301 -101399482 + (TC)n Simple_repeat Simple_repeat 1 51 0 3 1029 914 144 95 76 chr3 58200305 58200515 -101399268 - Lx3C LINE L1 -8 6968 6755 3 1029 337 188 67 77 chr3 58200647 58200751 -101399032 - HAL1 LINE L1 -758 1749 1647 3 1029 696 56 0 0 chr3 58200793 58200882 -101398901 + (TTTC)n Simple_repeat Simple_repeat 4 92 0 3 1029 383 0 0 21 chr3 58202394 58202442 -101397341 + (CA)n Simple_repeat Simple_repeat 2 48 0 3 1029 494 174 0 0 chr3 58203291 58203377 -101396406 - URR1B DNA MER1_type 0 225 140 3 1029 180 0 0 0 chr3 58203381 58203401 -101396382 + (TTTC)n Simple_repeat Simple_repeat 1 20 0 3 1029 222 37 0 0 chr3 58203401 58203428 -101396355 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 3 1029 956 70 0 0 chr3 58203428 58203556 -101396227 - B1_Mus1 SINE Alu -10 138 11 3 1029 539 248 57 38 chr3 58203556 58203638 -101396145 - ID_B1 SINE B4 -10 214 1 4 1029 314 226 210 0 chr3 58203638 58203762 -101396021 - URR1B DNA MER1_type -75 150 1 3 1029 602 267 12 18 chr3 58203930 58204094 -101395689 + RSINE1 SINE B4 3 165 0 4 1029 382 261 40 53 chr3 58204319 58204469 -101395314 + B1F SINE Alu 2 149 0 4 1029 192 40 0 0 chr3 58204535 58204560 -101395223 + (CAAA)n Simple_repeat Simple_repeat 1 25 0 4 1029 21 36 0 0 chr3 58204574 58204602 -101395181 + AT_rich Low_complexity Low_complexity 1 28 0 4 1029 1191 68 0 0 chr3 58204840 58204987 -101394796 + B1_Mm SINE Alu 1 147 0 4 1029 22 0 0 0 chr3 58205280 58205302 -101394481 + AT_rich Low_complexity Low_complexity 1 22 0 4 1029 198 0 0 0 chr3 58206234 58206256 -101393527 + (TTC)n Simple_repeat Simple_repeat 2 23 0 4 1029 931 252 93 42 chr3 58206473 58206784 -101392999 + Lx7 LINE L1 5867 6193 -1503 4 1029 2235 109 15 15 chr3 58206788 58207115 -101392668 - ORR1A2 LTR MaLR 0 327 1 4 1029 5957 115 40 141 chr3 58207115 58208500 -101391283 - ORR1A2-int LTR MaLR 0 1963 718 4 1029 557 162 0 132 chr3 58208459 58208580 -101391203 - MT2B LTR ERVL -314 287 183 4 1029 612 0 0 0 chr3 58209082 58209150 -101390633 + (GAAA)n Simple_repeat Simple_repeat 1 68 0 4 1029 385 141 0 27 chr3 58209150 58209223 -101390560 - ORR1A2-int LTR MaLR -1201 591 521 4 1029 530 147 11 0 chr3 58209217 58209312 -101390471 - ORR1A2 LTR MaLR -231 96 1 4 1029 6444 189 94 35 chr3 58209312 58209731 -101390052 + Lx7 LINE L1 6193 6618 -1078 4 1029 1140 66 0 0 chr3 58209731 58209868 -101389915 + B1_Mm SINE Alu 2 138 -9 4 1029 414 0 0 0 chr3 58209868 58209914 -101389869 + (CAAAA)n Simple_repeat Simple_repeat 2 47 0 4 1029 6444 189 94 35 chr3 58209914 58210781 -101389002 + Lx7 LINE L1 6619 7511 -185 4 1029 226 26 25 50 chr3 58210781 58210821 -101388962 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 4 1029 6444 189 94 35 chr3 58210821 58210950 -101388833 + Lx7 LINE L1 7512 7693 -3 4 1029 982 80 65 0 chr3 58211165 58211303 -101388480 - B1_Mus1 SINE Alu 0 148 2 4 1029 673 195 0 15 chr3 58211713 58211843 -101387940 - B1_Mus2 SINE Alu -2 145 18 4 1029 700 118 0 9 chr3 58212352 58212463 -101387320 + PB1D9 SINE Alu 10 119 -1 4 1029 22 0 0 0 chr3 58212514 58212536 -101387247 + AT_rich Low_complexity Low_complexity 1 22 0 4 1029 231 219 118 40 chr3 58212637 58212713 -101387070 - MTEa LTR MaLR 0 379 298 4 1029 747 191 93 28 chr3 58212731 58212946 -101386837 - MTEa LTR MaLR -150 229 1 4 1029 292 262 27 36 chr3 58213583 58213694 -101386089 + BC1_Mm scRNA scRNA 1 110 -42 4 1029 223 244 12 24 chr3 58213780 58213864 -101385919 + (TAA)n Simple_repeat Simple_repeat 1 83 0 4 1029 198 118 0 0 chr3 58213961 58213995 -101385788 + (CA)n Simple_repeat Simple_repeat 1 34 0 4 1029 696 232 171 0 chr3 58214129 58214310 -101385473 - B3 SINE B2 -4 212 1 4 1029 228 43 43 21 chr3 58215947 58215994 -101383789 + (TTTA)n Simple_repeat Simple_repeat 1 48 0 4 1029 802 101 119 37 chr3 58216024 58216036 -101383747 - B1_Mus1 SINE Alu 0 148 140 4 1029 234 0 0 0 chr3 58216036 58216062 -101383721 + (TTGG)n Simple_repeat Simple_repeat 2 27 0 4 1029 802 101 119 37 chr3 58216062 58216183 -101383600 - B1_Mus1 SINE Alu -9 139 4 4 1029 387 60 0 0 chr3 58216344 58216394 -101383389 + (T)n Simple_repeat Simple_repeat 1 50 0 4 1029 260 170 19 19 chr3 58216447 58216501 -101383282 - PB1 SINE Alu -37 90 37 4 1029 1258 34 0 0 chr3 58216759 58216906 -101382877 + B1_Mm SINE Alu 1 147 0 4 1029 370 180 190 0 chr3 58217653 58217753 -101382030 + B1_Mur4 SINE Alu 32 150 0 4 1029 31 0 0 0 chr3 58218479 58218510 -101381273 + AT_rich Low_complexity Low_complexity 1 31 0 4 1029 225 139 0 0 chr3 58218634 58218677 -101381106 + (CGG)n Simple_repeat Simple_repeat 1 43 0 4 1029 195 42 0 0 chr3 58218800 58218824 -101380959 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 4 1029 24 0 0 0 chr3 58218970 58218994 -101380789 + GC_rich Low_complexity Low_complexity 1 24 0 4 1029 21 0 0 0 chr3 58222639 58222660 -101377123 + AT_rich Low_complexity Low_complexity 1 21 0 4 1029 21 36 0 0 chr3 58225903 58225931 -101373852 + AT_rich Low_complexity Low_complexity 1 28 0 4 1029 470 179 115 10 chr3 58226154 58226250 -101373533 + B1F2 SINE Alu 37 142 -7 4 1029 910 233 24 5 chr3 58226418 58226625 -101373158 - B3 SINE B2 -5 211 1 4 1029 259 243 99 14 chr3 58227241 58227312 -101372471 + MIRc SINE MIR 91 167 -101 4 1029 1172 135 95 0 chr3 58227316 58227516 -101372267 - URR1A DNA MER1_type -7 219 1 4 1029 207 354 34 42 chr3 58227738 58227856 -101371927 + MIRm SINE MIR 39 155 -121 4 1029 270 116 0 0 chr3 58228277 58228320 -101371463 + (TATG)n Simple_repeat Simple_repeat 3 45 0 4 1029 275 0 29 0 chr3 58228867 58228902 -101370881 + (ATG)n Simple_repeat Simple_repeat 3 38 0 4 1029 486 235 75 63 chr3 58230771 58230930 -101368853 - B3 SINE B2 -3 213 53 4 1029 222 357 85 25 chr3 58230969 58231087 -101368696 + MIR SINE MIR 114 238 -24 4 1029 516 289 53 59 chr3 58233772 58233941 -101365842 + B4A SINE B4 116 283 -9 4 1029 587 78 11 0 chr3 58234466 58234556 -101365227 + (TTCTC)n Simple_repeat Simple_repeat 2 92 0 4 1029 908 176 101 14 chr3 58234640 58234848 -101364935 - URR1A DNA MER1_type 0 226 1 4 1029 766 245 50 16 chr3 58234992 58235182 -101364601 - B3A SINE B2 -10 183 2 4 1029 481 264 112 0 chr3 58238145 58238270 -101361513 + B1_Mm SINE Alu 4 142 -5 4 1029 231 341 0 68 chr3 58238442 58238530 -101361253 + ID4_ SINE ID 2 83 0 4 1029 445 273 148 120 chr3 58238543 58238826 -101360957 + B4A SINE B4 2 292 0 4 1029 679 173 60 8 chr3 58242652 58242786 -101356997 + B1_Mur2 SINE Alu 7 147 -2 4 1029 645 191 24 8 chr3 58242972 58243099 -101356684 + B1_Mm SINE Alu 6 134 -13 4 1029 189 107 0 0 chr3 58243135 58243163 -101356620 + (TTCC)n Simple_repeat Simple_repeat 1 28 0 4 1029 1117 85 67 22 chr3 58243163 58243343 -101356440 - B2_Mm2 SINE B2 -7 188 1 4 1029 326 279 100 15 chr3 58243493 58243635 -101356148 - B1_Mus1 SINE Alu 0 147 6 4 1029 273 364 75 0 chr3 58243637 58243741 -101356042 - MIR SINE MIR -54 154 44 4 1029 552 266 35 28 chr3 58244044 58244187 -101355596 + RSINE1 SINE B4 5 148 -17 4 1029 323 281 84 37 chr3 58244664 58244771 -101355012 + PB1D9 SINE Alu 1 112 -8 4 1029 272 318 23 23 chr3 58244776 58244863 -101354920 + ID SINE ID 2 88 -136 4 1029 276 130 0 0 chr3 58245218 58245264 -101354519 + (CATA)n Simple_repeat Simple_repeat 3 48 0 4 1029 376 315 60 103 chr3 58245360 58245693 -101354090 - MTEb LTR MaLR -10 369 51 4 1029 1887 322 65 8 chr3 58245705 58246325 -101353458 - MTE-int LTR MaLR -31 1549 895 4 1029 22 35 0 0 chr3 58247845 58247874 -101351909 + AT_rich Low_complexity Low_complexity 1 29 0 4 1029 1447 55 17 0 chr3 58247904 58248085 -101351698 + B2_Mm2 SINE B2 3 186 -9 4 1029 263 152 14 43 chr3 58248575 58248644 -101351139 + (TTATA)n Simple_repeat Simple_repeat 1 67 0 4 1029 1276 91 27 0 chr3 58248936 58249122 -101350661 - B2_Mm1t SINE B2 -1 192 2 4 1029 319 321 37 9 chr3 58249825 58249932 -101349851 + PB1D10 SINE Alu 7 116 -1 4 1029 936 229 19 14 chr3 58251433 58251646 -101348137 - B3 SINE B2 -2 214 1 4 1029 235 278 19 0 chr3 58252204 58252258 -101347525 + ID_B1 SINE B4 93 147 -77 4 1029 467 256 204 0 chr3 58252270 58252446 -101347337 + B3 SINE B2 1 212 -4 4 1029 403 292 106 0 chr3 58252451 58252564 -101347219 + RSINE1 SINE B4 1 125 -40 4 1029 837 117 0 0 chr3 58252617 58252745 -101347038 + (TAGA)n Simple_repeat Simple_repeat 1 128 0 4 1029 411 285 97 8 chr3 58253682 58253806 -101345977 + ID_B1 SINE B4 16 150 -74 4 1029 23 0 0 0 chr3 58254025 58254048 -101345735 + AT_rich Low_complexity Low_complexity 1 23 0 4 1029 283 232 14 68 chr3 58254454 58254528 -101345255 + B4 SINE B4 2 71 -221 4 1029 607 303 14 0 chr3 58254607 58254752 -101345031 + RSINE1 SINE B4 15 161 -4 4 1029 1110 182 24 0 chr3 58255313 58255522 -101344261 + B3 SINE B2 3 216 0 4 1029 255 320 60 0 chr3 58255541 58255641 -101344142 - L1MC LINE L1 -2167 5715 5610 4 1029 21 36 0 0 chr3 58255714 58255742 -101344041 + AT_rich Low_complexity Low_complexity 1 28 0 4 1029 504 0 0 0 chr3 58255880 58255936 -101343847 + (TG)n Simple_repeat Simple_repeat 1 56 0 4 1029 399 157 0 0 chr3 58256092 58256162 -101343621 + (TA)n Simple_repeat Simple_repeat 2 71 0 4 1029 351 344 0 0 chr3 58256642 58256738 -101343045 + PB1D10 SINE Alu 3 98 -19 4 1029 423 0 0 0 chr3 58256928 58256975 -101342808 + (TG)n Simple_repeat Simple_repeat 1 47 0 4 1029 468 0 0 0 chr3 58256975 58257026 -101342757 + (GA)n Simple_repeat Simple_repeat 1 52 0 4 1029 427 220 58 17 chr3 58257274 58257394 -101342389 + Lx9 LINE L1 7341 7465 -179 4 1029 470 131 148 20 chr3 58257454 58257555 -101342228 + PB1D9 SINE Alu 1 114 -6 4 1029 1092 43 35 7 chr3 58257562 58257704 -101342079 + B1_Mm SINE Alu 1 146 -1 4 1029 237 65 0 0 chr3 58257719 58257750 -101342033 + (GAAA)n Simple_repeat Simple_repeat 2 32 0 4 1029 404 186 42 8 chr3 58257765 58257884 -101341899 + Lx9 LINE L1 7517 7639 -5 4 1029 481 288 27 27 chr3 58258881 58259031 -101340752 - MER5A DNA MER1_type -36 153 4 4 1029 475 297 32 39 chr3 58260198 58260352 -101339431 - MER5A DNA MER1_type -2 187 35 4 1029 217 268 113 0 chr3 58260602 58260673 -101339110 - MIRb SINE MIR -8 260 182 4 1029 562 228 47 0 chr3 58261121 58261248 -101338535 + B1_Mur1 SINE Alu 2 134 -15 4 1029 278 194 97 0 chr3 58261336 58261398 -101338385 + MER5A DNA MER1_type 1 68 -121 4 1029 189 0 0 0 chr3 58261977 58261998 -101337785 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 4 1029 282 284 169 16 chr3 58262169 58262353 -101337430 - MIRm SINE MIR -9 267 42 4 1029 279 336 56 8 chr3 58270176 58270302 -101329481 + L1M5 LINE L1 5549 5680 -560 4 1029 189 298 87 62 chr3 58270981 58271142 -101328641 + L2 LINE L2 1949 2113 -1306 4 1029 4277 25 44 2 chr3 58271174 58271702 -101328081 - L1Md_F2 LINE L1 0 6582 6033 5 1029 259 289 91 53 chr3 58271704 58271912 -101327871 - L1MEe LINE L1 -3967 887 672 5 1029 279 349 19 45 chr3 58271968 58272124 -101327659 - L1MC5 LINE L1 -60 7901 7750 5 1029 319 243 57 0 chr3 58272956 58273026 -101326757 + PB1D7 SINE Alu 47 120 0 5 1029 1391 218 45 56 chr3 58273052 58273426 -101326357 + ORR1D2 LTR MaLR 1 370 0 5 1029 213 342 88 0 chr3 58274753 58274867 -101324916 - MIRc SINE MIR -79 189 66 5 1029 557 207 104 0 chr3 58275149 58275284 -101324499 + B1F SINE Alu 1 149 0 5 1029 363 239 69 12 chr3 58275838 58275969 -101323814 + B1F1 SINE Alu 2 146 -3 5 1029 315 0 0 0 chr3 58276029 58276064 -101323719 + (TC)n Simple_repeat Simple_repeat 2 36 0 5 1029 323 266 70 15 chr3 58276170 58276316 -101323467 - L1M4 LINE L1 -2012 4128 3960 5 1029 414 66 0 73 chr3 58276542 58276624 -101323159 + (TCCC)n Simple_repeat Simple_repeat 2 77 0 5 1029 399 328 8 0 chr3 58276638 58276757 -101323026 - PB1D7 SINE Alu 0 120 1 5 1029 2974 235 93 29 chr3 58277378 58278278 -101321505 + L1_Mur3 LINE L1 40 997 -6715 5 1029 274 200 59 44 chr3 58278288 58278356 -101321427 + L1_Mur3 LINE L1 970 1038 -6674 5 1029 253 206 56 42 chr3 58278358 58278429 -101321354 + L1_Mur3 LINE L1 967 1038 -6674 5 1029 274 200 59 44 chr3 58278583 58278651 -101321132 + L1_Mur3 LINE L1 970 1038 -6674 5 1029 270 216 52 39 chr3 58278647 58278724 -101321059 + L1_Mur3 LINE L1 977 1054 -6674 5 1029 3364 176 24 124 chr3 58278831 58279182 -101320601 + L1_Mur3 LINE L1 977 1282 -6446 5 1029 1289 35 14 0 chr3 58279182 58279327 -101320456 + B1_Mm SINE Alu 1 147 0 5 1029 3364 163 55 69 chr3 58279327 58280029 -101319754 + L1_Mur3 LINE L1 1278 1975 -3905 5 1029 1632 42 0 59 chr3 58280128 58280308 -101319475 + B2_Mm1a SINE B2 2 180 -13 5 1029 738 34 0 0 chr3 58280308 58280397 -101319386 + (GAA)n Simple_repeat Simple_repeat 2 90 0 5 1029 1632 42 0 59 chr3 58280397 58280420 -101319363 + B2_Mm1a SINE B2 181 193 0 5 1029 252 0 0 0 chr3 58280529 58280557 -101319226 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 5 1029 286 224 15 15 chr3 58281684 58281752 -101318031 + B3A SINE B2 1 68 -130 5 1029 490 267 44 15 chr3 58281758 58281895 -101317888 - Lx8 LINE L1 -206 7267 7127 5 1029 271 293 40 0 chr3 58282135 58282210 -101317573 + RSINE1 SINE B4 59 136 -29 5 1029 268 190 248 48 chr3 58282451 58282483 -101317300 + RLTR15 LTR ERVK 1 43 -316 5 1029 258 56 0 0 chr3 58282483 58282519 -101317264 + (CAA)n Simple_repeat Simple_repeat 1 36 0 5 1029 268 190 248 48 chr3 58282519 58282591 -101317192 + RLTR15 LTR ERVK 44 126 -233 5 1029 23484 161 18 99 chr3 58283103 58288345 -101311438 + Lx2B LINE L1 772 5571 -306 5 1029 1238 48 7 0 chr3 58288345 58288482 -101311301 + B1_Mm SINE Alu 1 138 -9 5 1029 261 0 0 0 chr3 58288482 58288511 -101311272 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 5 1029 23484 178 169 30 chr3 58288519 58289700 -101310083 + Lx2B LINE L1 5572 6973 -3 5 1029 241 302 23 78 chr3 58289739 58289868 -101309915 + Charlie14a DNA MER1_type 570 691 -473 5 1029 220 315 44 44 chr3 58289944 58290057 -101309726 - B3A SINE B2 -14 184 72 5 1029 242 226 118 88 chr3 58290490 58290660 -101309123 + Charlie14a DNA MER1_type 985 1159 -5 5 1029 257 245 71 11 chr3 58290775 58290856 -101308927 + L1M LINE L1 5315 5408 -766 5 1029 1311 179 5 5 chr3 58290856 58291080 -101308703 - URR1A DNA MER1_type 0 226 3 5 1029 229 298 119 40 chr3 58291080 58291124 -101308659 + L1M LINE L1 5409 5450 -724 5 1029 703 246 110 82 chr3 58291132 58291314 -101308469 + B3A SINE B2 1 187 -8 5 1029 4374 65 2 4 chr3 58291322 58291861 -101307922 + L1Md_F2 LINE L1 6031 6568 -14 5 1029 632 317 117 42 chr3 58291881 58291998 -101307785 + L1MB1 LINE L1 5486 5609 -559 5 1029 1031 135 21 46 chr3 58291998 58292192 -101307591 + B2_Mm2 SINE B2 1 189 -6 5 1029 632 317 117 42 chr3 58292192 58292594 -101307189 + L1MB1 LINE L1 5610 6044 -124 5 1029 245 286 52 0 chr3 58292594 58292671 -101307112 + ID4 SINE ID 3 83 0 5 1029 495 134 0 43 chr3 58292671 58292788 -101306995 + GA-rich Low_complexity Low_complexity 1 112 0 5 1029 1438 56 56 0 chr3 58292991 58293169 -101306614 - B2_Mm2 SINE B2 -3 192 5 5 1029 180 0 0 0 chr3 58293171 58293191 -101306592 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 5 1029 289 280 160 0 chr3 58293207 58293282 -101306501 + B3A SINE B2 1 87 -111 5 1029 250 282 35 12 chr3 58293272 58293358 -101306425 - Charlie7 DNA MER1_type -2503 109 22 5 1029 306 0 0 0 chr3 58293469 58293503 -101306280 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 5 1029 1216 29 0 7 chr3 58293503 58293641 -101306142 - B1_Mus2 SINE Alu -9 138 2 5 1029 320 304 0 32 chr3 58294337 58294432 -101305351 + C-rich Low_complexity Low_complexity 1 92 0 5 1029 358 302 43 72 chr3 58294993 58295132 -101304651 - B1F1 SINE Alu -9 140 6 5 1029 570 261 15 7 chr3 58295223 58295358 -101304425 + MER5A1 DNA MER1_type 31 166 0 5 1029 280 318 59 89 chr3 58295401 58295520 -101304263 + Kanga1c DNA Tc2 534 654 -75 5 1029 555 273 14 7 chr3 58295520 58295664 -101304119 - B1_Mur2 SINE Alu 0 149 5 5 1029 280 318 59 89 chr3 58295664 58295713 -101304070 + Kanga1c DNA Tc2 655 697 -32 5 1029 590 251 94 11 chr3 58295750 58295931 -101303852 - B3A SINE B2 -1 197 2 5 1029 491 99 316 26 chr3 58296807 58296921 -101302862 - B2_Mm2 SINE B2 -2 193 47 5 1029 1307 86 17 6 chr3 58296953 58297129 -101302654 - B2_Mm1t SINE B2 -14 179 2 5 1029 493 280 25 0 chr3 58298362 58298480 -101301303 + MTEa LTR MaLR 59 179 -200 5 1029 906 252 14 10 chr3 58298475 58298683 -101301100 + B3 SINE B2 8 216 0 5 1029 22 0 0 0 chr3 58298716 58298738 -101301045 + AT_rich Low_complexity Low_complexity 1 22 0 5 1029 8108 199 95 26 chr3 58298747 58298928 -101300855 - Lx6 LINE L1 0 7460 7268 5 1029 186 43 0 0 chr3 58298928 58298951 -101300832 + (CATAT)n Simple_repeat Simple_repeat 2 24 0 5 1029 8108 199 95 26 chr3 58298951 58299298 -101300485 - Lx6 LINE L1 -193 7267 6918 5 1029 567 0 0 0 chr3 58299298 58299361 -101300422 + (TC)n Simple_repeat Simple_repeat 2 64 0 5 1029 333 0 0 0 chr3 58299361 58299397 -101300386 + (TG)n Simple_repeat Simple_repeat 2 38 0 5 1029 18114 171 58 27 chr3 58299397 58301748 -101298035 - Lx6 LINE L1 -543 6917 4403 5 1029 1503 45 6 11 chr3 58301748 58301927 -101297856 + B2_Mm2 SINE B2 2 179 -16 5 1029 552 30 0 0 chr3 58301927 58301993 -101297790 + (GA)n Simple_repeat Simple_repeat 1 66 0 5 1029 321 26 0 0 chr3 58301999 58302037 -101297746 + (TAAA)n Simple_repeat Simple_repeat 4 41 0 5 1029 18114 153 34 28 chr3 58302037 58303033 -101296750 - Lx6 LINE L1 -1478 4402 3425 5 1029 1285 29 0 0 chr3 58303033 58303173 -101296610 + B1_Mus2 SINE Alu 2 141 -6 5 1029 18114 153 34 28 chr3 58303173 58304108 -101295675 - Lx6 LINE L1 -2456 3424 2491 5 1029 319 154 19 0 chr3 58304595 58304647 -101295136 + HAL1-3A_ME LINE L1 1975 2027 -831 5 1029 868 189 2 4 chr3 58304650 58305182 -101294601 + (CA)n Simple_repeat Simple_repeat 1 530 0 5 1029 1312 104 11 6 chr3 58305381 58305564 -101294219 - B2_Mm1t SINE B2 -9 184 1 5 1029 366 293 24 16 chr3 58306149 58306274 -101293509 + GA-rich Low_complexity Low_complexity 3 128 0 5 1029 204 206 0 0 chr3 58306613 58306647 -101293136 + C-rich Low_complexity Low_complexity 5 38 0 5 1029 2111 155 48 30 chr3 58306743 58306844 -101292939 - MTB_Mm LTR MaLR 0 407 308 5 1029 2226 102 14 83 chr3 58306844 58306898 -101292885 - ORR1A2 LTR MaLR 0 327 275 5 1029 1576 52 15 15 chr3 58306898 58307093 -101292690 - B2_Mm2 SINE B2 0 195 1 5 1029 2226 102 14 83 chr3 58307093 58307389 -101292394 - ORR1A2 LTR MaLR -53 274 1 5 1029 2111 155 48 30 chr3 58307389 58307687 -101292096 - MTB_Mm LTR MaLR -100 307 1 5 1029 548 234 42 7 chr3 58307953 58308095 -101291688 - B1_Mus1 SINE Alu -1 147 1 5 1029 229 260 9 111 chr3 58308288 58308396 -101291387 + RMER1C Other Other 1246 1342 0 5 1029 585 229 23 8 chr3 58308442 58308574 -101291209 - B1_Mur4 SINE Alu -9 141 8 5 1029 465 59 44 0 chr3 58308763 58308831 -101290952 + BGLII_B LTR ERVK 1 71 -370 5 1029 4018 129 62 10 chr3 58308831 58309045 -101290738 - L1_Mur1 LINE L1 -1721 4165 3956 5 1029 3552 48 0 2 chr3 58309045 58309442 -101290341 + MTA_Mm LTR MaLR 1 396 0 5 1029 4018 129 62 10 chr3 58309442 58309908 -101289875 - L1_Mur1 LINE L1 -1931 3955 3450 5 1029 1334 133 58 4 chr3 58309908 58310150 -101289633 + BGLII_B LTR ERVK 187 441 0 5 1029 478 143 19 0 chr3 58310398 58310503 -101289280 + (TA)n Simple_repeat Simple_repeat 1 107 0 5 1029 439 274 16 24 chr3 58310508 58310635 -101289148 - MT2A LTR ERVL -70 514 389 5 1029 580 221 88 50 chr3 58310631 58310831 -101288952 - MT2A LTR ERVL -287 206 5 5 1029 636 203 16 39 chr3 58310900 58311028 -101288755 + B1_Mur1 SINE Alu 6 130 -19 5 1029 347 202 0 11 chr3 58311030 58311125 -101288658 + (TA)n Simple_repeat Simple_repeat 1 94 0 5 1029 728 277 163 12 chr3 58311494 58311864 -101287919 + L1MB7 LINE L1 5621 6040 -319 5 1029 1636 256 89 81 chr3 58311918 58312806 -101286977 + L1M4 LINE L1 4101 4995 -1151 5 1029 899 180 146 0 chr3 58312976 58313154 -101286629 - B3 SINE B2 -3 213 10 5 1029 918 185 45 99 chr3 58313587 58313809 -101285974 + B3 SINE B2 1 210 -6 5 1029 24 0 0 0 chr3 58313849 58313873 -101285910 + AT_rich Low_complexity Low_complexity 1 24 0 5 1029 498 261 67 73 chr3 58313875 58314053 -101285730 - B3A SINE B2 -18 180 4 5 1029 799 250 89 69 chr3 58314700 58314902 -101284881 - B3 SINE B2 -10 206 1 5 1029 1391 78 33 6 chr3 58314931 58315111 -101284672 + B2_Mm2 SINE B2 2 186 -9 5 1029 1414 233 153 11 chr3 58315796 58316161 -101283622 - MTD LTR MaLR -2 417 1 5 1029 1307 95 33 6 chr3 58316314 58316494 -101283289 - B2_Mm1t SINE B2 -7 186 2 5 1029 396 0 0 0 chr3 58317045 58317089 -101282694 + (TG)n Simple_repeat Simple_repeat 2 45 0 5 1029 964 223 48 19 chr3 58317330 58317540 -101282243 - B3 SINE B2 0 216 1 5 1029 358 278 52 73 chr3 58317677 58317813 -101281970 + B4 SINE B4 72 204 -88 5 1029 863 126 0 0 chr3 58317708 58317835 -101281948 + B1_Mus2 SINE Alu 9 135 -12 5 1029 1261 141 85 116 chr3 58318008 58318361 -101281422 - Lx7 LINE L1 0 7696 7355 5 1029 184 170 0 36 chr3 58318361 58318416 -101281367 + (TA)n Simple_repeat Simple_repeat 1 53 0 5 1029 1999 181 181 6 chr3 58318427 58318850 -101280933 - Lx7 LINE L1 -328 7368 6850 5 1029 405 0 0 0 chr3 58318850 58318895 -101280888 + (TC)n Simple_repeat Simple_repeat 2 46 0 5 1029 1008 180 263 8 chr3 58318895 58318944 -101280839 - Lx7 LINE L1 -611 6849 6801 5 1029 968 79 0 0 chr3 58319184 58319310 -101280473 - B1_Mm SINE Alu -21 126 1 5 1029 526 292 62 0 chr3 58319310 58319340 -101280443 - B4 SINE B4 -201 91 53 5 1029 23 0 0 0 chr3 58319395 58319418 -101280365 + AT_rich Low_complexity Low_complexity 1 23 0 5 1029 538 296 57 28 chr3 58319433 58319610 -101280173 - B3A SINE B2 -16 182 1 5 1029 219 36 0 0 chr3 58319942 58319970 -101279813 + (CATA)n Simple_repeat Simple_repeat 2 29 0 6 1029 670 182 45 0 chr3 58319990 58320100 -101279683 - B1_Mur1 SINE Alu -33 116 2 6 1029 198 0 0 0 chr3 58320282 58320304 -101279479 + (A)n Simple_repeat Simple_repeat 1 22 0 6 1029 293 295 32 89 chr3 58320421 58320544 -101279239 - PB1D10 SINE Alu -1 116 1 6 1029 398 254 66 0 chr3 58320546 58320668 -101279115 + L1MD3 LINE L1 7842 7971 -24 6 1029 1231 75 0 0 chr3 58321002 58321149 -101278634 + B1_Mus1 SINE Alu 2 148 0 6 1029 715 219 21 58 chr3 58321478 58321667 -101278116 + B3 SINE B2 24 205 -11 6 1029 212 311 98 0 chr3 58322864 58322925 -101276858 - ID4_ SINE ID -3 80 14 6 1029 21 0 0 0 chr3 58322939 58322960 -101276823 + AT_rich Low_complexity Low_complexity 1 21 0 6 1029 468 35 0 0 chr3 58323322 58323380 -101276403 + (TG)n Simple_repeat Simple_repeat 1 58 0 6 1029 406 258 0 31 chr3 58323631 58323727 -101276056 - PB1D7 SINE Alu -18 102 10 6 1029 23 33 0 0 chr3 58323732 58323762 -101276021 + AT_rich Low_complexity Low_complexity 1 30 0 6 1029 22 0 0 0 chr3 58323785 58323807 -101275976 + AT_rich Low_complexity Low_complexity 1 22 0 6 1029 627 278 22 51 chr3 58324352 58324530 -101275253 + MTE2a LTR MaLR 194 366 -13 6 1029 23 0 0 0 chr3 58325045 58325068 -101274715 + AT_rich Low_complexity Low_complexity 1 23 0 6 1029 1233 61 0 20 chr3 58325068 58325218 -101274565 - B1_Mm SINE Alu 0 147 1 6 1029 2140 167 57 16 chr3 58325245 58325629 -101274154 + MTC LTR MaLR 14 413 -8 6 1029 899 169 0 21 chr3 58325672 58325817 -101273966 - B1_Mus1 SINE Alu -6 142 1 6 1030 282 257 0 75 chr3 58327983 58328063 -101271720 - ID4_ SINE ID 0 83 10 6 1030 34 0 0 0 chr3 58329251 58329285 -101270498 + GC_rich Low_complexity Low_complexity 1 34 0 6 1030 180 0 0 0 chr3 58330965 58330985 -101268798 + (TTTA)n Simple_repeat Simple_repeat 4 23 0 6 1030 659 246 52 17 chr3 58330990 58331164 -101268619 - B3A SINE B2 -18 180 1 6 1030 203 445 51 8 chr3 58331572 58331690 -101268093 + L2b LINE L2 3226 3348 -27 6 1030 271 309 23 58 chr3 58332209 58332295 -101267488 - MLT1K LTR MaLR -255 340 258 6 1030 637 196 9 9 chr3 58332903 58333016 -101266767 + B1_Mur1 SINE Alu 21 133 -16 6 1030 482 178 29 38 chr3 58333315 58333420 -101266363 + B1F1 SINE Alu 46 149 0 6 1030 283 341 24 0 chr3 58333544 58333629 -101266154 - PB1D10 SINE Alu -30 87 1 6 1030 186 240 0 57 chr3 58333659 58333712 -101266071 + L2c LINE L2 3325 3374 -13 6 1030 353 88 35 0 chr3 58333933 58333990 -101265793 + (TTTC)n Simple_repeat Simple_repeat 2 60 0 6 1030 1238 47 0 0 chr3 58333990 58334138 -101265645 - B1_Mus1 SINE Alu 0 148 1 6 1030 489 268 172 16 chr3 58335144 58335330 -101264453 - B3 SINE B2 0 216 2 6 1030 1325 103 0 5 chr3 58335374 58335559 -101264224 - B2_Mm2 SINE B2 -7 188 5 6 1030 773 250 17 6 chr3 58335644 58335821 -101263962 + B3A SINE B2 2 180 -18 6 1030 226 233 80 27 chr3 58336826 58336875 -101262908 - RLTR10C LTR ERVK -331 105 53 6 1030 611 239 67 56 chr3 58336875 58337070 -101262713 + B3A SINE B2 2 198 0 6 1030 320 273 95 47 chr3 58337125 58337225 -101262558 + L1MC4a LINE L1 6890 6998 -884 6 1030 1252 94 44 0 chr3 58337225 58337406 -101262377 + B2_Mm2 SINE B2 1 189 -6 6 1030 320 273 95 47 chr3 58337406 58337447 -101262336 + L1MC4a LINE L1 6999 7038 -844 6 1030 1171 69 0 0 chr3 58337447 58337591 -101262192 + B1_Mus1 SINE Alu 1 144 -4 6 1030 320 273 95 47 chr3 58337591 58337617 -101262166 + L1MC4a LINE L1 7039 7065 -817 6 1030 763 199 15 0 chr3 58337711 58337847 -101261936 - B1_Mur3 SINE Alu -11 138 1 6 1030 511 149 0 0 chr3 58338226 58338300 -101261483 - B3 SINE B2 -142 74 1 6 1030 855 121 0 70 chr3 58338402 58338476 -101261307 + B1_Mur2 SINE Alu 11 83 -66 6 1030 1628 26 5 0 chr3 58338476 58338666 -101261117 + B2_Mm1t SINE B2 1 191 -2 6 1030 855 121 0 70 chr3 58338666 58338733 -101261050 + B1_Mur2 SINE Alu 84 142 -7 6 1030 802 269 35 0 chr3 58338840 58339037 -101260746 + B3 SINE B2 2 205 -11 6 1030 2080 138 117 87 chr3 58339046 58339305 -101260478 - RLTR19 LTR ERVK -48 451 199 6 1030 1197 102 27 11 chr3 58339305 58339493 -101260290 - B2_Mm1t SINE B2 0 193 3 6 1030 2080 138 117 87 chr3 58339493 58339669 -101260114 - RLTR19 LTR ERVK -301 198 3 6 1030 1171 28 21 0 chr3 58339749 58339893 -101259890 - B1_Mm SINE Alu 0 147 1 6 1030 400 228 15 82 chr3 58339901 58340023 -101259760 + PB1D9 SINE Alu 21 149 -1 6 1030 2015 168 43 11 chr3 58340740 58341090 -101258693 - ORR1C1 LTR MaLR -8 370 10 6 1030 810 98 44 36 chr3 58341090 58341227 -101258556 - B1_Mm SINE Alu -7 140 3 6 1030 32 26 0 0 chr3 58342315 58342354 -101257429 + AT_rich Low_complexity Low_complexity 1 39 0 6 1030 797 177 13 13 chr3 58342383 58342532 -101257251 - B1_Mur2 SINE Alu 0 149 1 6 1030 296 220 24 128 chr3 58342420 58342545 -101257238 - MT2B LTR ERVL -337 264 153 6 1030 742 197 133 17 chr3 58342563 58342744 -101257039 - B3 SINE B2 -13 203 2 6 1030 246 313 126 51 chr3 58342772 58342947 -101256836 + MIRb SINE MIR 43 230 -38 6 1030 369 43 0 0 chr3 58343699 58343746 -101256037 + (CA)n Simple_repeat Simple_repeat 1 47 0 6 1030 575 216 150 7 chr3 58343820 58343960 -101255823 - ID_B1 SINE B4 -64 160 1 6 1030 769 297 72 30 chr3 58343961 58344266 -101255517 - Tigger7 DNA MER2_type -1894 597 280 6 1030 556 109 87 0 chr3 58344318 58344410 -101255373 + B1_Mur2 SINE Alu 48 147 -2 6 1030 1134 77 0 0 chr3 58344453 58344590 -101255193 + B1_Mus1 SINE Alu 3 139 -9 6 1030 269 26 26 0 chr3 58344590 58344628 -101255155 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 6 1030 26 0 0 0 chr3 58344859 58344885 -101254898 + AT_rich Low_complexity Low_complexity 1 26 0 6 1030 319 265 359 41 chr3 58345095 58345251 -101254532 - B3 SINE B2 -9 207 3 6 1030 35 24 0 0 chr3 58345951 58345993 -101253790 + AT_rich Low_complexity Low_complexity 1 42 0 6 1030 491 255 0 0 chr3 58345999 58346101 -101253682 - PB1D9 SINE Alu -7 113 12 6 1030 555 236 28 0 chr3 58346103 58346209 -101253574 + B1_Mur2 SINE Alu 4 112 -37 6 1030 501 261 17 34 chr3 58346212 58346331 -101253452 - B1_Mur1 SINE Alu -29 120 4 6 1030 312 254 33 91 chr3 58346226 58346347 -101253436 - MT2B LTR ERVL -336 265 152 6 1030 374 265 138 42 chr3 58346441 58346681 -101253102 - L1MC5 LINE L1 -223 7738 7476 6 1030 573 231 45 0 chr3 58346756 58346890 -101252893 - B1_Mur3 SINE Alu -8 141 2 6 1030 317 319 36 22 chr3 58347027 58347165 -101252618 - L1MC5 LINE L1 -1148 6813 6674 6 1030 270 0 0 0 chr3 58347218 58347248 -101252535 + (TTTCC)n Simple_repeat Simple_repeat 1 30 0 6 1030 920 162 0 6 chr3 58347248 58347420 -101252363 + CT-rich Low_complexity Low_complexity 3 173 0 6 1030 531 30 0 0 chr3 58347548 58347615 -101252168 + B1_Mus2 SINE Alu 81 147 0 6 1030 207 0 0 0 chr3 58347615 58347638 -101252145 + (A)n Simple_repeat Simple_repeat 1 23 0 6 1030 740 228 320 0 chr3 58348046 58348309 -101251474 - MTC LTR MaLR -67 352 10 6 1030 209 372 13 11 chr3 58348712 58348814 -101250969 - MIRb SINE MIR -161 107 5 6 1030 23 0 0 0 chr3 58349001 58349024 -101250759 + AT_rich Low_complexity Low_complexity 1 23 0 6 1030 1221 55 0 0 chr3 58349603 58349749 -101250034 + B1_Mus2 SINE Alu 2 147 0 6 1030 1047 194 19 5 chr3 58350098 58350305 -101249478 - B3 SINE B2 -6 210 1 6 1030 1216 63 6 0 chr3 58350789 58350948 -101248835 + B2_Mm1t SINE B2 1 160 -33 6 1030 210 111 0 0 chr3 58350982 58351018 -101248765 + B2_Mm2 SINE B2 61 96 -99 6 1030 231 36 0 0 chr3 58351057 58351085 -101248698 + (A)n Simple_repeat Simple_repeat 1 28 0 6 1030 1296 85 0 17 chr3 58351443 58351622 -101248161 + B2_Mm2 SINE B2 2 177 -18 6 1030 240 35 0 0 chr3 58351640 58351669 -101248114 + (CA)n Simple_repeat Simple_repeat 2 30 0 6 1030 592 305 8 0 chr3 58351823 58351951 -101247832 + ID_B1 SINE B4 86 214 -10 6 1030 2750 264 74 50 chr3 58353223 58353625 -101246158 - Lx8 LINE L1 -150 7323 6919 6 1030 1162 61 0 45 chr3 58353625 58353640 -101246143 - B1_Mus2 SINE Alu 0 147 139 6 1030 206 32 32 0 chr3 58353640 58353671 -101246112 + (GTTTG)n Simple_repeat Simple_repeat 2 33 0 6 1030 1162 61 0 45 chr3 58353671 58353809 -101245974 - B1_Mus2 SINE Alu -9 138 1 6 1030 2750 264 74 50 chr3 58353809 58354368 -101245415 - Lx8 LINE L1 -555 6918 6339 6 1030 842 204 267 67 chr3 58354621 58354813 -101244970 - ORR1C1 LTR MaLR 0 378 124 6 1030 1174 62 0 0 chr3 58354813 58354957 -101244826 + B1_Mus2 SINE Alu 4 147 0 6 1030 842 204 267 67 chr3 58354957 58354982 -101244801 - ORR1C1 LTR MaLR -255 123 96 6 1030 1522 57 5 5 chr3 58354982 58355175 -101244608 + B2_Mm1t SINE B2 1 193 0 6 1030 842 204 267 67 chr3 58355175 58355271 -101244512 - ORR1C1 LTR MaLR -283 95 1 6 1030 207 146 0 0 chr3 58355407 58355448 -101244335 + (T)n Simple_repeat Simple_repeat 1 41 0 6 1030 1246 28 7 0 chr3 58355448 58355593 -101244190 - B1_Mus2 SINE Alu 0 147 2 6 1030 1131 58 0 0 chr3 58355679 58355818 -101243965 + B1_Mus1 SINE Alu 3 141 -7 6 1030 315 321 18 44 chr3 58356875 58356989 -101242794 - PB1D10 SINE Alu -1 116 6 6 1030 270 243 114 0 chr3 58357021 58357091 -101242692 - ID4_ SINE ID -2 81 4 6 1030 1442 62 15 15 chr3 58357369 58357564 -101242219 - B2_Mm2 SINE B2 0 195 1 6 1030 1171 76 0 0 chr3 58357632 58357777 -101242006 + B1_Mus1 SINE Alu 1 145 -3 6 1030 302 49 66 0 chr3 58357777 58357838 -101241945 + (GA)n Simple_repeat Simple_repeat 1 65 0 6 1030 493 233 0 49 chr3 58357843 58357965 -101241818 + B1F SINE Alu 2 117 -32 6 1030 352 327 55 30 chr3 58357965 58358007 -101241776 + B4 SINE B4 87 254 -38 6 1030 406 287 57 35 chr3 58358172 58358313 -101241470 - MLT1A0 LTR MaLR -4 361 218 7 1030 758 254 20 56 chr3 58358636 58358886 -101240897 - RMER15 LTR ERVL -7 568 328 7 1030 286 253 73 10 chr3 58359056 58359152 -101240631 - RSINE1 SINE B4 -40 125 24 7 1030 364 194 15 0 chr3 58359820 58359887 -101239896 - ID4_ SINE ID -13 70 3 7 1030 21 36 0 0 chr3 58359924 58359952 -101239831 + AT_rich Low_complexity Low_complexity 1 28 0 7 1030 740 128 0 0 chr3 58361471 58361588 -101238195 + B1_Mur4 SINE Alu 34 150 0 7 1030 315 344 18 64 chr3 58361625 58361715 -101238068 - MIR SINE MIR -78 184 96 7 1030 535 218 197 48 chr3 58361715 58361903 -101237880 + B3 SINE B2 1 216 0 7 1030 315 344 18 64 chr3 58361903 58361983 -101237800 - MIR SINE MIR -167 95 22 7 1030 1584 37 5 0 chr3 58362109 58362297 -101237486 - B2_Mm1t SINE B2 -3 190 2 7 1030 2954 75 14 5 chr3 58362546 58362962 -101236821 - BGLII LTR ERVK 0 421 2 7 1030 733 228 27 0 chr3 58362973 58363122 -101236661 - RSINE1 SINE B4 0 165 13 7 1030 321 89 0 0 chr3 58363277 58363322 -101236461 + (TA)n Simple_repeat Simple_repeat 1 45 0 7 1030 297 267 0 128 chr3 58363386 58363472 -101236311 + PB1D10 SINE Alu 2 76 -41 7 1030 684 200 68 4 chr3 58363855 58364081 -101235702 - ORR1C2 LTR MaLR 0 384 50 7 1030 550 214 85 8 chr3 58364436 58364554 -101235229 - RSINE1 SINE B4 -29 136 10 7 1030 304 344 68 68 chr3 58364552 58364714 -101235069 + MLT1I LTR MaLR 19 180 -231 7 1030 21 0 0 0 chr3 58364737 58364758 -101235025 + AT_rich Low_complexity Low_complexity 1 21 0 7 1030 2924 176 90 8 chr3 58364805 58365436 -101234347 - Lx6 LINE L1 -534 6926 6244 7 1030 1879 255 121 92 chr3 58365447 58366679 -101233104 - RMER12 LTR ERVK 0 1322 1 7 1030 954 266 21 72 chr3 58366684 58367057 -101232726 - Lx6 LINE L1 -1247 6213 5860 7 1030 3279 148 67 34 chr3 58367113 58367247 -101232536 - L1_Mur3 LINE L1 -3701 2179 2059 7 1030 198 0 0 0 chr3 58367247 58367269 -101232514 + (TG)n Simple_repeat Simple_repeat 2 23 0 7 1030 3279 148 67 34 chr3 58367269 58367456 -101232327 - L1_Mur3 LINE L1 -3822 2058 1860 7 1030 3880 106 11 9 chr3 58367456 58368019 -101231764 + LTRIS2 LTR ERV1 1 564 0 7 1030 3279 148 67 34 chr3 58368019 58368463 -101231320 - L1_Mur3 LINE L1 -4021 1859 1388 7 1030 771 181 0 0 chr3 58368496 58368629 -101231154 - B1_Mus1 SINE Alu -6 142 10 7 1030 1203 159 11 4 chr3 58368638 58368953 -101230830 - L1_Mur3 LINE L1 -4481 1399 1083 7 1030 2173 116 92 0 chr3 58368953 58369290 -101230493 + RLTR9A LTR ERVK 1 368 0 7 1030 483 48 0 0 chr3 58369653 58369715 -101230068 + (GA)n Simple_repeat Simple_repeat 1 62 0 7 1030 8091 184 111 69 chr3 58369715 58370364 -101229419 + RMER16-int LTR ERVK 320 1082 -4324 7 1030 1173 62 0 0 chr3 58370364 58370509 -101229274 + B1_Mus2 SINE Alu 2 146 -1 7 1030 8091 184 111 69 chr3 58370509 58370778 -101229005 + RMER16-int LTR ERVK 1083 1299 -4107 7 1030 1013 62 0 0 chr3 58370778 58370906 -101228877 + B1_Mus1 SINE Alu 3 130 -18 7 1030 8091 184 111 69 chr3 58370906 58372098 -101227685 + RMER16-int LTR ERVK 1300 2553 -2853 7 1030 1208 48 0 0 chr3 58372098 58372245 -101227538 + B1_Mus2 SINE Alu 1 147 0 7 1030 8091 184 111 69 chr3 58372245 58372582 -101227201 + RMER16-int LTR ERVK 2554 2870 -2536 7 1030 182 65 65 0 chr3 58372584 58372615 -101227168 + (TATG)n Simple_repeat Simple_repeat 2 34 0 7 1030 198 103 0 0 chr3 58372704 58372733 -101227050 + (T)n Simple_repeat Simple_repeat 1 29 0 7 1030 1136 82 0 0 chr3 58372733 58372880 -101226903 - B1_Mus2 SINE Alu 0 147 1 7 1030 1613 215 25 87 chr3 58372890 58373293 -101226490 + RLTR1B LTR ERV1 135 512 0 7 1030 405 0 0 0 chr3 58373298 58373343 -101226440 + (TG)n Simple_repeat Simple_repeat 2 46 0 7 1030 4035 119 52 38 chr3 58373343 58374038 -101225745 + RMER16-int LTR ERVK 2865 3583 -1823 7 1030 1370 94 0 10 chr3 58374038 58374232 -101225551 + B2_Mm1t SINE B2 1 192 -1 7 1030 4035 187 45 70 chr3 58374232 58374340 -101225443 + RMER16-int LTR ERVK 3584 3614 -1792 7 1030 1173 56 0 0 chr3 58374340 58374482 -101225301 - B1_Mus2 SINE Alu -4 143 2 7 1030 2291 232 41 92 chr3 58374482 58374900 -101224883 + RMER16-int LTR ERVK 5830 6211 -1195 7 1030 304 269 11 0 chr3 58375054 58375147 -101224636 + RMER16-int LTR ERVK 6332 6425 -981 7 1030 2331 109 25 19 chr3 58375416 58375782 -101224001 + RLTR9A LTR ERVK 1 368 0 7 1030 2637 226 82 7 chr3 58375782 58376513 -101223270 - L1_Mur3 LINE L1 -6640 1072 287 7 1030 253 242 42 139 chr3 58377027 58377171 -101222612 + MLT1A0 LTR MaLR 4 133 -275 7 1030 862 169 0 0 chr3 58377394 58377530 -101222253 + B1_Mur2 SINE Alu 1 136 -13 7 1030 375 78 0 0 chr3 58377530 58377581 -101222202 + (CAAG)n Simple_repeat Simple_repeat 1 51 0 7 1030 495 277 0 0 chr3 58377620 58377714 -101222069 + B4A SINE B4 1 94 -198 7 1030 294 262 244 8 chr3 58377740 58377867 -101221916 + RSINE1 SINE B4 5 161 -4 7 1030 423 0 0 0 chr3 58377897 58377944 -101221839 + (CAA)n Simple_repeat Simple_repeat 2 48 0 7 1030 2153 192 45 62 chr3 58377952 58378481 -101221302 - RLTR17 LTR ERVK -77 615 96 7 1030 225 356 40 63 chr3 58378471 58378494 -101221289 + MT2B2 LTR ERVL 142 161 -423 7 1030 524 248 87 7 chr3 58378494 58378632 -101221151 + B1_Mur3 SINE Alu 1 149 0 7 1030 557 154 376 6 chr3 58378702 58378859 -101220924 - B3 SINE B2 0 216 2 7 1030 347 311 67 0 chr3 58378977 58379096 -101220687 + ID_B1 SINE B4 98 224 0 7 1030 442 283 28 28 chr3 58379104 58379246 -101220537 + B1F2 SINE Alu 2 143 -6 7 1030 1177 56 0 0 chr3 58379462 58379606 -101220177 - B1_Mus2 SINE Alu 0 147 4 7 1030 256 209 0 0 chr3 58380187 58380230 -101219553 + ID4_ SINE ID 2 44 -39 7 1030 21 0 0 0 chr3 58381338 58381359 -101218424 + AT_rich Low_complexity Low_complexity 1 21 0 7 1030 346 288 144 0 chr3 58381948 58382059 -101217724 + ID_B1 SINE B4 95 221 -3 7 1030 1859 81 97 45 chr3 58382739 58382789 -101216994 - ORR1A2 LTR MaLR -1 326 282 7 1030 856 126 20 53 chr3 58382789 58382940 -101216843 - B1_Mus1 SINE Alu -1 147 2 7 1030 1859 81 97 45 chr3 58382940 58383199 -101216584 - ORR1A2 LTR MaLR -46 281 1 7 1030 1406 60 11 11 chr3 58383673 58383859 -101215924 + B2_Mm2 SINE B2 2 187 -8 7 1030 397 244 143 15 chr3 58383943 58384068 -101215715 + B3A SINE B2 10 152 -46 7 1030 183 80 0 0 chr3 58384068 58384093 -101215690 + (TA)n Simple_repeat Simple_repeat 2 26 0 7 1030 1200 61 0 0 chr3 58384203 58384351 -101215432 + B1_Mus1 SINE Alu 1 148 0 7 1030 222 118 0 0 chr3 58384451 58384485 -101215298 + (T)n Simple_repeat Simple_repeat 1 34 0 7 1030 1200 54 0 0 chr3 58384485 58384632 -101215151 - B1_Mus2 SINE Alu 0 147 1 7 1030 225 0 0 0 chr3 58384764 58384789 -101214994 + (T)n Simple_repeat Simple_repeat 1 25 0 7 1030 908 25 34 0 chr3 58384796 58384914 -101214869 - B1_Mm SINE Alu -1 146 25 7 1030 460 221 84 54 chr3 58384801 58384922 -101214861 - ID_B1 SINE B4 -6 218 95 7 1030 696 130 195 0 chr3 58384922 58385076 -101214707 + B2_Mm2 SINE B2 4 187 -8 7 1030 460 221 84 54 chr3 58385076 58385121 -101214662 - ID_B1 SINE B4 -130 94 48 7 1030 364 296 63 8 chr3 58386343 58386469 -101213314 - RSINE1 SINE B4 -30 135 3 7 1030 22 0 0 0 chr3 58386832 58386854 -101212929 + AT_rich Low_complexity Low_complexity 1 22 0 7 1030 269 204 0 36 chr3 58386925 58386981 -101212802 - RSINE1 SINE B4 -106 59 6 7 1030 1252 40 0 0 chr3 58387341 58387489 -101212294 - B1_Mus1 SINE Alu 0 148 1 7 1030 280 261 50 37 chr3 58388189 58388277 -101211506 + ID4 SINE ID 6 94 -58 7 1030 1518 48 27 0 chr3 58389424 58389612 -101210171 - B2_Mm1a SINE B2 0 193 1 7 1030 212 267 83 0 chr3 58389668 58389728 -101210055 - ID4_ SINE ID -18 65 1 7 1030 212 222 37 0 chr3 58390049 58390130 -101209653 + (TG)n Simple_repeat Simple_repeat 1 84 0 7 1030 1760 85 194 8 chr3 58391098 58391544 -101208239 - L1_Mus2 LINE L1 -1 6653 6079 7 1030 783 149 94 29 chr3 58393057 58393195 -101206588 - B1_Mur3 SINE Alu -1 148 2 7 1030 378 0 0 0 chr3 58395155 58395197 -101204586 + (TG)n Simple_repeat Simple_repeat 1 42 0 7 1030 183 42 0 0 chr3 58395206 58395230 -101204553 + (GGGTG)n Simple_repeat Simple_repeat 3 26 0 7 1030 21 0 0 0 chr3 58395651 58395672 -101204111 + AT_rich Low_complexity Low_complexity 1 21 0 7 1030 1097 58 0 14 chr3 58398105 58398244 -101201539 + B1_Mm SINE Alu 2 138 -9 7 1030 225 0 0 0 chr3 58398254 58398279 -101201504 + (TAAAA)n Simple_repeat Simple_repeat 2 26 0 7 1030 358 231 65 21 chr3 58398356 58398449 -101201334 - RMER10A LTR ERVL -28 414 318 7 1030 3043 238 128 75 chr3 58398712 58398871 -101200912 - RLTR22_Mus LTR ERVK -63 1745 1555 7 1030 1265 95 45 0 chr3 58398871 58399050 -101200733 + B2_Mm2 SINE B2 2 188 -7 7 1030 3043 238 128 75 chr3 58399050 58400428 -101199355 - RLTR22_Mus LTR ERVK -254 1554 126 7 1030 1191 74 6 0 chr3 58400428 58400591 -101199192 + B2_Mm2 SINE B2 1 164 -31 7 1030 293 294 75 8 chr3 58400581 58400701 -101199082 - RMER12 LTR ERVK -1194 128 1 7 1030 1070 68 6 70 chr3 58400780 58400937 -101198846 - B1_Mus2 SINE Alu 0 147 1 7 1030 306 0 0 0 chr3 58401655 58401689 -101198094 + (TG)n Simple_repeat Simple_repeat 1 34 0 7 1030 393 313 0 25 chr3 58401689 58401802 -101197981 - PB1D9 SINE Alu -4 116 6 7 1030 501 250 75 11 chr3 58402240 58402412 -101197371 + B3 SINE B2 4 185 -13 7 1030 265 187 32 21 chr3 58402542 58402635 -101197148 + (CCCTAA)n Simple_repeat Simple_repeat 4 97 0 7 1030 255 277 42 11 chr3 58402666 58402761 -101197022 + (CCCTAA)n Simple_repeat Simple_repeat 3 100 0 7 1030 285 312 11 0 chr3 58402942 58403035 -101196748 + (CCCTAA)n Simple_repeat Simple_repeat 3 96 0 7 1030 388 48 0 31 chr3 58403104 58403169 -101196614 + (TTTG)n Simple_repeat Simple_repeat 2 64 0 7 1030 1151 88 0 0 chr3 58403178 58403326 -101196457 - B1_Mus1 SINE Alu 0 148 1 7 1030 258 344 19 7 chr3 58403339 58403494 -101196289 + (CCCTAA)n Simple_repeat Simple_repeat 4 160 0 7 1030 709 236 219 30 chr3 58403607 58403850 -101195933 - MTE2b LTR MaLR 0 379 93 7 1030 1154 164 27 9 chr3 58403850 58404071 -101195712 - URR1A DNA MER1_type 0 226 2 7 1030 709 241 70 48 chr3 58404071 58404158 -101195625 - MTE2b LTR MaLR -287 92 1 7 1030 448 180 34 0 chr3 58404218 58404307 -101195476 - B1F2 SINE Alu -53 96 5 7 1030 307 214 136 2 chr3 58404325 58404440 -101195343 - Lx7 LINE L1 -28 7445 7345 7 1030 32844 66 6 8 chr3 58404444 58409468 -101190315 + L1Md_F2 LINE L1 571 5585 -298 7 1030 8441 36 3 2 chr3 58409469 58410464 -101189319 + L1Md_F2 LINE L1 5587 6582 0 7 1030 1825 251 117 59 chr3 58410467 58410996 -101188787 - Lx7 LINE L1 -532 7164 6594 7 1030 1208 52 13 0 chr3 58410996 58411149 -101188634 - L1_Mus1 LINE L1 0 6567 6413 8 1030 1825 251 117 59 chr3 58411149 58411260 -101188523 - Lx7 LINE L1 -1103 6593 6487 7 1030 1100 124 84 0 chr3 58411300 58411478 -101188305 + B2_Mm1a SINE B2 1 193 0 8 1030 3458 139 18 54 chr3 58411488 58412174 -101187609 + RMER6A LTR ERVK 11 671 -85 8 1030 228 235 81 81 chr3 58412177 58412288 -101187495 + RSINE1 SINE B4 55 165 0 8 1030 244 320 113 0 chr3 58412312 58412462 -101187321 + Charlie2b DNA MER1_type 2509 2675 -107 8 1030 1342 77 28 0 chr3 58412786 58412968 -101186815 + B2_Mm2 SINE B2 2 188 -7 8 1030 2057 153 45 24 chr3 58413242 58413616 -101186167 - RLTR14 LTR ERV1 0 382 1 8 1030 273 288 50 0 chr3 58413618 58413698 -101186085 + MLT1A0 LTR MaLR 61 144 -221 8 1030 415 257 9 0 chr3 58413706 58413811 -101185972 - B1F1 SINE Alu -42 107 2 8 1030 234 231 34 126 chr3 58413709 58413828 -101185955 - MT2B LTR ERVL -344 257 150 8 1030 233 193 156 83 chr3 58414015 58414111 -101185672 - MIR SINE MIR -115 153 51 8 1030 255 146 0 0 chr3 58414196 58414251 -101185532 + (GA)n Simple_repeat Simple_repeat 1 55 0 8 1030 1267 120 5 15 chr3 58414323 58414518 -101185265 - B2_Mm2 SINE B2 -1 194 2 8 1030 280 282 13 13 chr3 58414541 58414620 -101185163 - ID4 SINE ID -3 80 2 8 1030 9078 110 19 3 chr3 58414965 58416292 -101183491 + Lx2 LINE L1 5646 6993 -4 8 1030 561 229 0 8 chr3 58416341 58416460 -101183323 + B3 SINE B2 90 207 -9 8 1030 2682 81 45 18 chr3 58416498 58416898 -101182885 + RLTR10A LTR ERVK 1 411 0 8 1030 1982 141 64 6 chr3 58416953 58417311 -101182472 + ORR1B1 LTR MaLR 16 394 0 8 1030 324 323 102 0 chr3 58417366 58417493 -101182290 - B1F1 SINE Alu -7 142 3 8 1030 26 50 0 0 chr3 58417885 58417925 -101181858 + AT_rich Low_complexity Low_complexity 1 40 0 8 1030 919 157 4 23 chr3 58418680 58418943 -101180840 + CT-rich Low_complexity Low_complexity 1 257 0 8 1030 275 291 0 75 chr3 58418954 58419047 -101180736 - PB1D10 SINE Alu -28 89 4 8 1030 648 247 0 55 chr3 58419047 58419140 -101180643 - ID SINE ID -140 84 1 8 1030 436 289 125 12 chr3 58419290 58419449 -101180334 - RMER21B LTR ERV1 -275 567 390 8 1030 1227 242 95 66 chr3 58419449 58419910 -101179873 + RLTR20B3 LTR ERVK 1 469 -108 8 1030 288 0 0 0 chr3 58419910 58419942 -101179841 + (TG)n Simple_repeat Simple_repeat 2 33 0 8 1030 1227 242 95 66 chr3 58419942 58419983 -101179800 + RLTR20B3 LTR ERVK 470 517 -60 8 1030 576 0 0 0 chr3 58420508 58420572 -101179211 + (GA)n Simple_repeat Simple_repeat 2 65 0 8 1030 1061 101 0 20 chr3 58422447 58422598 -101177185 - B1_Mur4 SINE Alu -2 148 1 8 1030 186 188 0 0 chr3 58424226 58424258 -101175525 - L2b LINE L2 -254 3121 3090 8 1030 330 323 82 8 chr3 58424406 58424540 -101175243 + B1F SINE Alu 1 144 -5 8 1030 262 338 7 75 chr3 58424694 58424841 -101174942 - RSINE1 SINE B4 -1 164 28 8 1030 638 243 54 5 chr3 58425435 58425621 -101174162 + L1M4 LINE L1 3713 3907 -2239 8 1030 420 246 70 47 chr3 58425628 58425653 -101174130 - RSINE1 SINE B4 -6 159 128 8 1030 1081 3 67 3 chr3 58425653 58425936 -101173847 + (TG)n Simple_repeat Simple_repeat 1 300 0 8 1030 420 246 70 47 chr3 58425936 58426037 -101173746 - RSINE1 SINE B4 -38 127 30 8 1030 641 230 121 43 chr3 58426038 58426320 -101173463 + L1M4 LINE L1 4098 4401 -1745 8 1030 358 205 8 39 chr3 58427197 58427324 -101172459 + CT-rich Low_complexity Low_complexity 2 124 0 8 1030 1197 74 0 0 chr3 58427324 58427472 -101172311 - B1_Mus1 SINE Alu 0 148 1 8 1030 394 222 19 39 chr3 58427479 58427582 -101172201 - B1_Mur1 SINE Alu 0 149 49 8 1030 351 0 0 0 chr3 58428597 58428636 -101171147 + (TC)n Simple_repeat Simple_repeat 2 40 0 8 1030 261 0 0 0 chr3 58428636 58428664 -101171119 + (TG)n Simple_repeat Simple_repeat 2 30 0 8 1030 513 227 70 8 chr3 58429376 58429505 -101170278 - ID_B1 SINE B4 0 224 88 8 1030 795 123 179 0 chr3 58429508 58429670 -101170113 + RLTR24 LTR ERV1 5 195 -334 8 1030 255 139 0 0 chr3 58429673 58429716 -101170067 + MusHAL1 LINE L1 1522 1564 -1148 8 1030 874 244 60 23 chr3 58429714 58429758 -101170025 + Lx6 LINE L1 7209 7257 -203 8 1030 414 0 0 0 chr3 58429758 58429804 -101169979 + (TA)n Simple_repeat Simple_repeat 2 47 0 8 1030 874 244 60 23 chr3 58429804 58429977 -101169806 + Lx6 LINE L1 7258 7433 -27 8 1030 335 188 216 10 chr3 58429987 58430084 -101169699 - MMAR1 DNA Mariner -151 1135 1019 8 1030 1266 65 71 0 chr3 58430084 58430253 -101169530 + B2_Mm2 SINE B2 1 181 -14 8 1030 291 232 49 0 chr3 58430296 58430378 -101169405 - L1M4 LINE L1 -654 5520 5435 8 1030 928 264 35 92 chr3 58431042 58431380 -101168403 - ORR1E LTR MaLR -5 354 36 8 1030 502 292 79 5 chr3 58432664 58432867 -101166916 + MLT1B LTR MaLR 8 225 -165 8 1030 333 0 0 0 chr3 58433833 58433870 -101165913 + (CAA)n Simple_repeat Simple_repeat 2 38 0 8 1030 423 214 92 25 chr3 58435064 58435184 -101164599 + B4A SINE B4 151 278 -14 8 1030 536 185 93 0 chr3 58435279 58435387 -101164396 - B1_Mus2 SINE Alu -1 146 29 8 1030 1708 160 68 108 chr3 58436238 58436638 -101163145 - ORR1C2 LTR MaLR 0 384 1 8 1030 369 0 0 0 chr3 58436729 58436770 -101163013 + (CA)n Simple_repeat Simple_repeat 2 42 0 8 1030 791 226 47 21 chr3 58437289 58437479 -101162304 - B3 SINE B2 -1 215 21 8 1030 408 161 0 0 chr3 58437622 58437703 -101162080 + GA-rich Low_complexity Low_complexity 3 83 0 8 1030 21 0 0 0 chr3 58438403 58438424 -101161359 + AT_rich Low_complexity Low_complexity 1 21 0 8 1030 21 36 0 0 chr3 58438801 58438829 -101160954 + AT_rich Low_complexity Low_complexity 1 28 0 8 1030 21 0 0 0 chr3 58439073 58439094 -101160689 + AT_rich Low_complexity Low_complexity 1 21 0 8 1030 614 289 5 95 chr3 58439179 58439389 -101160394 + B4 SINE B4 7 197 -95 8 1030 21 36 0 0 chr3 58439450 58439478 -101160305 + AT_rich Low_complexity Low_complexity 1 28 0 8 1030 24 0 0 0 chr3 58439623 58439647 -101160136 + AT_rich Low_complexity Low_complexity 1 24 0 8 1030 1382 86 0 5 chr3 58439768 58439955 -101159828 + B2_Mm2 SINE B2 2 187 -8 8 1030 338 184 0 28 chr3 58440860 58440966 -101158817 + CT-rich Low_complexity Low_complexity 2 104 0 8 1030 225 132 0 0 chr3 58443193 58443231 -101156552 + (TTGG)n Simple_repeat Simple_repeat 2 39 0 8 1030 3374 221 46 29 chr3 58443550 58444351 -101155432 - Lx9 LINE L1 -433 7211 6397 8 1030 228 259 0 0 chr3 58444944 58445025 -101154758 + (CACAG)n Simple_repeat Simple_repeat 5 85 0 8 1030 207 0 0 0 chr3 58445227 58445250 -101154533 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 8 1030 1020 43 20 60 chr3 58445250 58445391 -101154392 - B1_Mus2 SINE Alu -10 137 2 8 1030 197 299 104 0 chr3 58445408 58445475 -101154308 - L2a LINE L2 -261 3165 3092 8 1030 284 0 132 0 chr3 58446071 58446147 -101153636 + (GGGA)n Simple_repeat Simple_repeat 3 88 0 8 1030 223 333 11 44 chr3 58446919 58447010 -101152773 - L2a LINE L2 -49 3377 3290 8 1030 505 220 59 22 chr3 58447446 58447581 -101152202 + RMER13A LTR ERVK 1 140 -720 8 1030 212 385 12 0 chr3 58447755 58447838 -101151945 + MIRm SINE MIR 1 84 -192 8 1030 477 287 0 18 chr3 58448481 58448591 -101151192 + PB1D10 SINE Alu 9 116 -1 8 1030 265 288 75 0 chr3 58449153 58449232 -101150551 + MLT1C LTR MaLR 357 441 -26 8 1030 501 267 83 8 chr3 58449232 58449459 -101150324 - RMER13A LTR ERVK -2 858 576 8 1030 180 111 0 0 chr3 58449507 58449534 -101150249 + (CA)n Simple_repeat Simple_repeat 1 27 0 8 1030 1128 130 0 0 chr3 58449705 58449922 -101149861 + (CA)n Simple_repeat Simple_repeat 1 217 0 8 1030 1158 122 0 0 chr3 58449934 58450114 -101149669 + (CA)n Simple_repeat Simple_repeat 1 180 0 8 1030 302 318 83 79 chr3 58450657 58450934 -101148849 + MLT1H LTR MaLR 260 537 -12 8 1030 334 304 50 14 chr3 58450939 58451079 -101148704 - L1MEg LINE L1 -5380 704 560 8 1030 2067 168 45 3 chr3 58452113 58452465 -101147318 + ORR1B2 LTR MaLR 1 367 0 8 1030 433 82 0 16 chr3 58452466 58452528 -101147255 + ORR1D2 LTR MaLR 307 367 -3 8 1030 1284 156 14 5 chr3 58452744 58452957 -101146826 - B3 SINE B2 -1 215 1 8 1030 727 21 31 0 chr3 58453042 58453138 -101146645 + (TCTA)n Simple_repeat Simple_repeat 2 100 0 8 1030 180 0 0 0 chr3 58453149 58453169 -101146614 + (TTTG)n Simple_repeat Simple_repeat 3 22 0 8 1030 383 278 74 0 chr3 58453208 58453316 -101146467 - B3A SINE B2 -82 116 1 8 1030 317 243 73 27 chr3 58453319 58453429 -101146354 - L1M5 LINE L1 -372 5801 5687 8 1030 248 259 24 36 chr3 58453509 58453593 -101146190 - MLT1A LTR MaLR 0 374 292 8 1030 254 187 0 153 chr3 58453635 58453707 -101146076 - MIR SINE MIR -46 162 101 8 1030 575 230 26 0 chr3 58453731 58453844 -101145939 + RSINE1 SINE B4 12 127 -38 8 1030 25 31 0 0 chr3 58453855 58453887 -101145896 + AT_rich Low_complexity Low_complexity 1 32 0 8 1030 199 328 162 57 chr3 58454070 58454091 -101145692 + L2 LINE L2 1789 1810 -1609 8 1030 953 233 14 5 chr3 58454091 58454298 -101145485 - B3 SINE B2 -6 210 2 8 1030 199 328 162 57 chr3 58454298 58454677 -101145106 + L2 LINE L2 1811 2231 -1188 8 1030 216 0 0 0 chr3 58454679 58454703 -101145080 + (A)n Simple_repeat Simple_repeat 1 24 0 8 1030 1085 49 0 89 chr3 58454703 58454860 -101144923 + B1_Mus1 SINE Alu 1 143 -5 8 1030 251 67 0 43 chr3 58454863 58454910 -101144873 + (CAAA)n Simple_repeat Simple_repeat 4 48 0 8 1030 184 266 71 27 chr3 58455054 58455166 -101144617 + L2 LINE L2 2379 2495 -924 8 1030 575 273 42 0 chr3 58455434 58455577 -101144206 - B1_Mur1 SINE Alu 0 149 1 8 1030 27 0 0 0 chr3 58457197 58457224 -101142559 + AT_rich Low_complexity Low_complexity 1 27 0 8 1030 3219 39 39 0 chr3 58457231 58457612 -101142171 + MTA_Mm LTR MaLR 1 396 0 8 128 320 73 0 0 chr3 58458091 58458132 -101141651 + ORR1D1 LTR MaLR 323 363 -11 9 1031 1195 43 0 0 chr3 58458132 58458271 -101141512 + B1_Mus2 SINE Alu 1 139 -8 9 1031 1158 301 60 10 chr3 58458503 58458919 -101140864 - L1_Rod LINE L1 -57 5790 5354 9 1031 201 289 58 35 chr3 58459765 58459851 -101139932 + L2c LINE L2 3266 3353 -34 9 1031 1338 267 129 38 chr3 58460064 58460621 -101139162 - Lx9 LINE L1 -85 7559 6952 9 1031 2041 256 72 35 chr3 58460615 58461392 -101138391 - L1_Rod LINE L1 -3030 2817 2012 9 1031 1119 203 91 88 chr3 58461394 58461724 -101138059 + ORR1D2 LTR MaLR 40 370 0 9 1031 798 254 55 58 chr3 58461726 58462035 -101137748 - L1_Rod LINE L1 -6387 1221 914 9 1031 249 350 104 24 chr3 58462323 58462487 -101137296 + MARNA DNA Mariner 75 251 -335 9 1031 228 336 9 61 chr3 58463025 58463139 -101136644 + MamRep1879 DNA hAT? 107 214 -2 9 1031 237 333 12 24 chr3 58463461 58463544 -101136239 + MIRb SINE MIR 121 202 -66 9 1031 359 73 0 18 chr3 58464407 58464463 -101135320 + (GA)n Simple_repeat Simple_repeat 2 56 0 9 1031 28 0 0 0 chr3 58464581 58464609 -101135174 + AT_rich Low_complexity Low_complexity 1 28 0 9 1031 519 243 30 79 chr3 58464644 58464809 -101134974 - RSINE1 SINE B4 0 165 9 9 1031 894 275 47 106 chr3 58464955 58465407 -101134376 - MER63C DNA AcHobo -6 924 500 9 1031 406 287 64 0 chr3 58465483 58465685 -101134098 - Lx9 LINE L1 -13 7631 7417 9 1031 2658 253 49 6 chr3 58465705 58466377 -101133406 - Lx9 LINE L1 -348 7296 6596 9 1031 302 149 28 130 chr3 58466386 58466494 -101133289 - MER63C DNA AcHobo -467 463 367 9 1031 224 366 62 0 chr3 58466542 58466654 -101133129 + MIRm SINE MIR 21 139 -137 9 1031 1888 302 124 20 chr3 58467361 58468216 -101131567 - Lx8 LINE L1 -3 7470 6527 9 1031 793 171 100 12 chr3 58468218 58468378 -101131405 - ORR1C2 LTR MaLR 0 384 211 9 1031 22 35 0 0 chr3 58468406 58468435 -101131348 + AT_rich Low_complexity Low_complexity 1 29 0 9 1031 395 0 0 163 chr3 58469771 58469986 -101129797 + (CGGAG)n Simple_repeat Simple_repeat 1 180 0 9 1031 227 222 0 18 chr3 58470562 58470617 -101129166 - ORR1C2 LTR MaLR -154 220 167 9 1031 584 116 0 10 chr3 58470617 58470713 -101129070 + (GGGA)n Simple_repeat Simple_repeat 2 96 0 9 1031 1059 168 0 56 chr3 58470713 58470909 -101128874 - ORR1C2 LTR MaLR -199 185 1 9 1031 666 258 170 23 chr3 58470933 58471229 -101128554 - Lx8 LINE L1 -1032 6612 6172 9 1031 261 298 48 4 chr3 58471363 58471484 -101128299 + L1MB4 LINE L1 6041 6178 -2 9 1031 246 217 0 16 chr3 58471861 58471922 -101127861 - L1_Mur3 LINE L1 -429 5451 5392 9 1031 263 322 83 14 chr3 58471926 58472071 -101127712 - RSINE1 SINE B4 -8 157 3 9 1031 586 308 35 28 chr3 58472079 58472509 -101127274 - L1M2 LINE L1 -865 5432 4993 9 1031 456 324 7 14 chr3 58472512 58472653 -101127130 + ID_B1 SINE B4 84 223 -1 9 1031 945 232 93 18 chr3 58472673 58472885 -101126898 - L1M2 LINE L1 -1136 5007 4775 9 1031 234 0 0 0 chr3 58472885 58472911 -101126872 + (TG)n Simple_repeat Simple_repeat 1 26 0 9 1031 945 232 93 18 chr3 58472911 58473032 -101126751 - L1M2 LINE L1 -1369 4774 4649 9 1031 1250 209 214 6 chr3 58473033 58473217 -101126566 - ORR1C2 LTR MaLR 0 384 199 9 1031 306 0 0 0 chr3 58473217 58473251 -101126532 + (GA)n Simple_repeat Simple_repeat 1 34 0 9 1031 1250 209 214 6 chr3 58473251 58473384 -101126399 - ORR1C2 LTR MaLR -186 198 1 9 1031 2582 183 59 6 chr3 58473384 58473873 -101125910 - ORR1C2-int LTR MaLR 0 1370 856 9 1031 275 277 25 63 chr3 58473886 58474044 -101125739 - L1_Mur3 LINE L1 -1514 4366 4215 9 1031 1881 120 0 6 chr3 58474020 58474306 -101125477 + Lx LINE L1 6301 6617 -37 9 1031 395 286 62 34 chr3 58474356 58474533 -101125250 - Lx8 LINE L1 -94 7379 7198 9 1031 806 55 0 9 chr3 58474533 58474642 -101125141 + (TCCC)n Simple_repeat Simple_repeat 4 111 0 9 1031 1117 278 115 16 chr3 58474661 58475103 -101124680 - Lx8 LINE L1 -345 7128 6643 9 1031 229 260 63 25 chr3 58475103 58475122 -101124661 - ID_B1 SINE B4 -62 162 112 9 1031 248 160 20 20 chr3 58475122 58475173 -101124610 - PB1D9 SINE Alu -59 61 11 9 1031 198 71 0 0 chr3 58475501 58475529 -101124254 + (T)n Simple_repeat Simple_repeat 1 28 0 9 1031 238 325 0 13 chr3 58475534 58475612 -101124171 + B4 SINE B4 1 77 -215 9 1031 288 0 0 0 chr3 58476335 58476367 -101123416 + (TTCA)n Simple_repeat Simple_repeat 2 33 0 9 1031 1152 206 140 28 chr3 58478036 58478321 -101121462 - MTD LTR MaLR -1 418 102 9 1031 25 31 0 0 chr3 58478873 58478905 -101120878 + AT_rich Low_complexity Low_complexity 1 32 0 9 1031 249 207 17 17 chr3 58481789 58481848 -101117935 + G-rich Low_complexity Low_complexity 4 62 0 9 1031 189 74 0 0 chr3 58481935 58481962 -101117821 + (CAAAA)n Simple_repeat Simple_repeat 3 29 0 9 1031 243 0 0 0 chr3 58481982 58482009 -101117774 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 9 1031 302 281 13 29 chr3 58482916 58483021 -101116762 + Tigger7 DNA MER2_type 2017 2116 -375 9 1031 426 39 0 0 chr3 58483241 58483293 -101116490 + (GA)n Simple_repeat Simple_repeat 2 53 0 9 1031 794 246 2 38 chr3 58485146 58485358 -101114425 + B3 SINE B2 1 192 -3 9 1031 258 250 178 79 chr3 58486674 58486826 -101112957 - MER53 DNA hAT 0 193 27 9 1031 441 0 0 0 chr3 58487086 58487135 -101112648 + (GGAA)n Simple_repeat Simple_repeat 3 51 0 9 1031 390 185 91 71 chr3 58488207 58488306 -101111477 + PB1D10 SINE Alu 12 112 -5 9 1031 222 261 0 28 chr3 58488306 58488377 -101111406 + GA-rich Low_complexity Low_complexity 3 71 0 9 1031 1790 144 55 26 chr3 58490179 58490522 -101109261 - RLTR15 LTR ERVK -6 353 1 9 1031 192 152 0 0 chr3 58491035 58491068 -101108715 + A-rich Low_complexity Low_complexity 1 33 0 9 1031 896 136 9 157 chr3 58491217 58491427 -101108356 - URR1B DNA MER1_type -10 215 37 9 1031 8631 155 78 7 chr3 58491852 58493460 -101106323 + Lx LINE L1 4167 5884 -770 9 1031 805 191 427 4 chr3 58493455 58493701 -101106082 + Lx6 LINE L1 7101 7450 -10 9 1031 1083 69 17 0 chr3 58495035 58495210 -101104573 + (GA)n Simple_repeat Simple_repeat 1 178 0 9 1031 203 274 0 40 chr3 58495584 58495683 -101104100 + G-rich Low_complexity Low_complexity 5 99 0 9 1031 230 27 81 0 chr3 58496363 58496400 -101103383 + (CGGGG)n Simple_repeat Simple_repeat 5 44 0 9 1031 446 207 276 13 chr3 58496971 58497123 -101102660 + B3A SINE B2 1 192 -6 9 1031 239 251 8 40 chr3 58497487 58497591 -101102192 - RSINE1 SINE B4 -29 136 2 9 1031 220 319 11 21 chr3 58497992 58498085 -101101698 + B1_Mm SINE Alu 17 108 -39 9 1031 320 304 0 0 chr3 58498124 58498203 -101101580 + ID4_ SINE ID 3 81 -2 9 1031 1189 68 0 0 chr3 58498398 58498546 -101101237 - B1_Mus1 SINE Alu 0 148 1 9 1031 277 272 357 2 chr3 58498626 58498810 -101100973 - MIRm SINE MIR -6 256 19 9 1031 374 0 0 21 chr3 58499239 58499286 -101100497 + (GAAAA)n Simple_repeat Simple_repeat 2 47 0 9 1031 394 230 0 120 chr3 58500000 58500158 -101099625 - B3 SINE B2 -76 140 2 1 1031 192 77 0 0 chr3 58500732 58500758 -101099025 + (CAA)n Simple_repeat Simple_repeat 2 27 0 2 1031 301 229 111 48 chr3 58501439 58501614 -101098169 - RMER21A LTR ERV1 -348 494 298 3 1031 232 311 134 57 chr3 58501805 58501962 -101097821 + MLT1F2 LTR MaLR 1 169 -391 4 1031 249 153 32 20 chr3 58502013 58502085 -101097698 - MLT1A LTR MaLR -75 299 218 5 1031 385 268 154 38 chr3 58502239 58502454 -101097329 + MLT1F2 LTR MaLR 197 443 -126 4 1031 23 86 0 0 chr3 58502623 58502681 -101097102 + AT_rich Low_complexity Low_complexity 1 58 0 6 1031 21 0 0 0 chr3 58502722 58502743 -101097040 + AT_rich Low_complexity Low_complexity 1 21 0 7 1031 763 242 70 10 chr3 58502747 58502947 -101096836 - B3 SINE B2 0 216 5 8 1031 544 307 7 18 chr3 58503556 58503732 -101096051 - B3A SINE B2 -3 213 38 9 1031 803 157 12 32 chr3 58503733 58504152 -101095631 + G-rich Low_complexity Low_complexity 1 410 0 1 1031 297 186 42 17 chr3 58504139 58504250 -101095533 + GA-rich Low_complexity Low_complexity 4 118 0 1 1031 3358 21 26 0 chr3 58504250 58504635 -101095148 - MTA_Mm LTR MaLR -1 395 1 1 1031 271 281 127 32 chr3 58504864 58505022 -101094761 - MIR SINE MIR -72 190 18 1 1031 411 42 324 0 chr3 58505024 58505095 -101094688 - B1_Mus1 SINE Alu -54 94 1 1 1031 235 319 202 48 chr3 58505302 58505434 -101094349 - B4A SINE B4 -8 284 127 1 1031 1763 125 20 142 chr3 58505434 58505835 -101093948 + ORR1B1 LTR MaLR 1 352 -42 1 1031 371 67 0 0 chr3 58505836 58505896 -101093887 + Lx LINE L1 6475 6534 -120 1 1031 2146 98 3 97 chr3 58505969 58506201 -101093582 - ORR1A3 LTR MaLR 0 326 99 1 1031 1237 90 0 108 chr3 58506201 58506413 -101093370 - B2_Mm2 SINE B2 -5 190 2 1 1031 2146 98 3 97 chr3 58506413 58506540 -101093243 - ORR1A3 LTR MaLR -228 98 1 1 1031 343 239 0 64 chr3 58507229 58507304 -101092479 + MLT1A1 LTR MaLR 305 374 -34 2 1031 747 244 127 87 chr3 58507304 58507636 -101092147 - MER2 DNA MER2_type 0 345 1 2 1031 343 239 0 64 chr3 58507636 58507654 -101092129 + MLT1A1 LTR MaLR 375 392 -16 2 1031 822 300 72 22 chr3 58508503 58508864 -101090919 - MTEa LTR MaLR 0 379 1 2 1031 243 302 48 79 chr3 58509199 58509325 -101090458 - MER91B DNA Tip100 -50 140 19 2 1031 244 290 78 20 chr3 58509432 58509534 -101090249 + MLT1A1 LTR MaLR 396 503 -92 2 1031 343 229 0 24 chr3 58509777 58509862 -101089921 - Lx7 LINE L1 0 7696 7614 2 1031 324 318 65 45 chr3 58509863 58510064 -101089719 + LTR40c LTR ERVL 165 369 -96 2 1031 589 229 14 7 chr3 58510162 58510307 -101089476 - B3 SINE B2 -6 210 65 2 1031 258 250 184 9 chr3 58510490 58510599 -101089184 - L1MA10 LINE L1 0 6334 6207 2 1031 351 274 118 0 chr3 58510630 58510732 -101089051 - PB1D9 SINE Alu -5 115 2 2 1031 1219 48 0 0 chr3 58510989 58511136 -101088647 - B1_Mm SINE Alu 0 147 1 2 1031 578 278 55 40 chr3 58511274 58511548 -101088235 + MER33 DNA MER1_type 15 292 -32 3 1031 309 339 8 16 chr3 58511715 58511844 -101087939 + MER90a LTR ERV1 63 190 -424 3 1031 708 164 0 15 chr3 58511986 58512116 -101087667 + B1_Mus1 SINE Alu 18 145 -3 3 1031 577 271 131 7 chr3 58512747 58513022 -101086761 - MLT1C LTR MaLR -156 311 3 3 1031 556 266 114 5 chr3 58513164 58513357 -101086426 - RMER15 LTR ERVL -3 572 359 3 1031 240 328 81 65 chr3 58513656 58513917 -101085866 - LTR82A LTR ERVL -178 694 430 3 1031 442 291 87 78 chr3 58514250 58514559 -101085224 - LTR82A LTR ERVL -550 322 11 3 1031 278 255 16 41 chr3 58514660 58514778 -101085005 + MIR3 SINE MIR 81 189 -19 3 1031 360 0 0 0 chr3 58514939 58514979 -101084804 + (TG)n Simple_repeat Simple_repeat 2 41 0 3 1031 465 220 11 0 chr3 58515272 58515363 -101084420 + ORR1E LTR MaLR 1 92 -267 3 1031 601 308 101 67 chr3 58515434 58516069 -101083714 - RMER13A LTR ERVK -199 709 30 3 1031 1026 223 42 15 chr3 58516112 58516372 -101083411 + ORR1E LTR MaLR 87 353 -6 3 1031 228 135 0 0 chr3 58516844 58516881 -101082902 + (CAT)n Simple_repeat Simple_repeat 3 39 0 4 1031 785 259 71 39 chr3 58517217 58517498 -101082285 + RMER15 LTR ERVL 272 561 -14 4 1031 429 20 0 0 chr3 58518977 58519027 -101080756 + (TTTA)n Simple_repeat Simple_repeat 1 50 0 4 1031 346 261 26 18 chr3 58519278 58519391 -101080392 + Charlie1a DNA MER1_type 10 123 -1332 4 1031 300 27 0 0 chr3 58519391 58519428 -101080355 + (T)n Simple_repeat Simple_repeat 1 37 0 4 1031 1335 259 182 48 chr3 58519728 58520502 -101079281 + Charlie1a DNA MER1_type 503 1402 -53 4 1031 587 229 35 14 chr3 58520502 58520644 -101079139 - B1F SINE Alu 0 149 5 4 1031 1335 259 182 48 chr3 58520644 58520697 -101079086 + Charlie1a DNA MER1_type 1403 1441 -14 4 1031 393 282 9 26 chr3 58521275 58521388 -101078395 + PB1D10 SINE Alu 1 111 -6 4 1031 628 239 117 0 chr3 58521403 58521583 -101078200 + B3 SINE B2 15 215 -1 4 1031 259 246 0 0 chr3 58522220 58522289 -101077494 + A-rich Low_complexity Low_complexity 1 69 0 4 1031 1671 267 37 11 chr3 58522293 58522755 -101077028 - Lx7 LINE L1 -328 7368 6895 4 1031 343 264 88 47 chr3 58525623 58525794 -101073989 - RMER21B LTR ERV1 -342 500 323 5 1031 372 306 67 87 chr3 58526080 58526527 -101073256 + RodERV21-int LTR ERV1 698 1135 -3856 5 1031 231 36 0 0 chr3 58527464 58527492 -101072291 + (TG)n Simple_repeat Simple_repeat 2 29 0 5 1031 265 242 31 31 chr3 58529229 58529327 -101070456 - L1MC3 LINE L1 -744 7041 6944 5 1031 646 289 10 16 chr3 58530702 58530754 -101069029 - B3A SINE B2 -4 194 143 5 1031 279 0 0 0 chr3 58530754 58530785 -101068998 + (TG)n Simple_repeat Simple_repeat 2 32 0 5 1031 646 289 10 16 chr3 58530785 58530925 -101068858 - B3A SINE B2 -56 142 3 5 1031 1093 193 103 50 chr3 58532368 58532530 -101067253 - Lx9 LINE L1 -36 7608 7431 5 1031 396 0 0 0 chr3 58532530 58532574 -101067209 + (CA)n Simple_repeat Simple_repeat 2 45 0 5 1031 1093 193 103 50 chr3 58532574 58532711 -101067072 - Lx9 LINE L1 -214 7430 7293 5 1031 422 270 91 17 chr3 58533894 58534092 -101065691 + MLT1D LTR MaLR 1 208 -419 5 1031 636 120 0 0 chr3 58534162 58534262 -101065521 + (GGGGA)n Simple_repeat Simple_repeat 3 102 0 5 1031 233 257 26 39 chr3 58534268 58534345 -101065438 + MLT1D LTR MaLR 424 499 -128 5 1031 243 247 86 0 chr3 58534736 58534817 -101064966 + MLT1D LTR MaLR 517 604 -6 5 1031 366 177 52 0 chr3 58535189 58535276 -101064507 - B1_Mur4 SINE Alu -11 109 20 6 1031 293 265 47 84 chr3 58535962 58536069 -101063714 - B1_Mur1 SINE Alu -1 148 46 6 1031 261 290 100 0 chr3 58536540 58536640 -101063143 + MIRc SINE MIR 79 188 -80 6 1031 194 346 73 29 chr3 58536871 58537008 -101062775 + MIRb SINE MIR 102 244 -24 6 1031 629 257 159 4 chr3 58537255 58537482 -101062301 - MTC LTR MaLR 0 421 160 6 1031 579 35 11 23 chr3 58537557 58537645 -101062138 + (TC)n Simple_repeat Simple_repeat 1 87 0 6 1031 548 257 14 21 chr3 58537668 58537811 -101061972 + RMER10B LTR ERVL 246 387 -11 6 1031 336 250 271 29 chr3 58537839 58537979 -101061804 - MTC LTR MaLR -233 186 13 6 1031 451 240 9 0 chr3 58538141 58538373 -101061410 + (CA)n Simple_repeat Simple_repeat 1 234 0 6 1031 1049 299 32 26 chr3 58538388 58538766 -101061017 - L1_Mur3 LINE L1 -158 5722 5343 6 1031 31 0 0 0 chr3 58538815 58538846 -101060937 + AT_rich Low_complexity Low_complexity 1 31 0 6 1031 1217 55 0 0 chr3 58538846 58538991 -101060792 - B1_Mm SINE Alu -2 145 1 7 1031 279 235 27 81 chr3 58538993 58539141 -101060642 - RLTR15 LTR ERVK -63 296 157 7 1031 360 225 43 87 chr3 58539144 58539329 -101060454 - RLTR15 LTR ERVK -150 209 33 7 1031 2273 289 124 40 chr3 58539350 58540713 -101059070 - L1M2 LINE L1 -771 5372 3896 7 1031 410 306 129 42 chr3 58540765 58541090 -101058693 - L1_Mur3 LINE L1 -2592 3288 2910 6 1031 612 50 0 0 chr3 58541090 58541170 -101058613 + (TTCC)n Simple_repeat Simple_repeat 3 82 0 7 1031 485 286 98 50 chr3 58541170 58541252 -101058531 - L1_Mur3 LINE L1 -2971 2909 2834 6 1031 1395 86 11 5 chr3 58541252 58541440 -101058343 + B2_Mm2 SINE B2 3 191 -4 7 1031 485 284 95 50 chr3 58541440 58541667 -101058116 - L1_Mur3 LINE L1 -3046 2834 2592 6 1031 1445 198 84 69 chr3 58541688 58542106 -101057677 + RLTR24 LTR ERV1 106 529 0 7 1031 432 0 0 0 chr3 58542227 58542275 -101057508 + (TC)n Simple_repeat Simple_repeat 1 48 0 7 1031 324 0 0 0 chr3 58543200 58543236 -101056547 + (TTTA)n Simple_repeat Simple_repeat 3 38 0 7 1031 10073 108 16 6 chr3 58543236 58545173 -101054610 - Lx2A1 LINE L1 -11 6997 5037 7 1031 3176 108 54 143 chr3 58545205 58546015 -101053768 - RMER17A LTR ERVK -13 738 1 8 1031 618 143 0 10 chr3 58546019 58546118 -101053665 - Lx2A1 LINE L1 -849 5037 4940 7 1031 1450 129 80 1 chr3 58546070 58546326 -101053457 + Lx2A1 LINE L1 4676 4955 -928 7 1031 649 281 68 9 chr3 58546895 58547114 -101052669 + MER2 DNA MER2_type 113 344 -1 8 1031 6310 50 9 16 chr3 58547508 58548295 -101051488 + L1Md_F2 LINE L1 5789 6569 -13 8 1031 539 319 156 56 chr3 58549411 58549962 -101049821 - LTR82B Low_complexity ERVL -112 718 113 8 1031 575 277 109 34 chr3 58549764 58550029 -101049754 - LTR82A LTR ERVL -577 295 11 8 1031 297 0 0 0 chr3 58550142 58550175 -101049608 + (A)n Simple_repeat Simple_repeat 1 33 0 8 1031 399 270 128 65 chr3 58550258 58550642 -101049141 - Charlie2a DNA MER1_type -79 2782 2375 8 1031 36 62 0 0 chr3 58550826 58550890 -101048893 + AT_rich Low_complexity Low_complexity 1 64 0 8 1031 1046 228 21 25 chr3 58551034 58551277 -101048506 - B4 SINE B4 -2 290 49 8 1031 419 214 0 12 chr3 58551336 58551421 -101048362 - ID_B1 SINE B4 -49 175 92 8 1031 259 280 13 0 chr3 58552006 58552081 -101047702 + MLT2F LTR ERVL 5 80 -583 9 1031 325 302 140 58 chr3 58552132 58552339 -101047444 + MLT2F LTR ERVL 185 408 -255 9 1031 273 228 0 0 chr3 58552351 58552430 -101047353 + (TG)n Simple_repeat Simple_repeat 2 80 0 9 1031 32 43 0 0 chr3 58552665 58552711 -101047072 + AT_rich Low_complexity Low_complexity 1 46 0 9 1031 876 238 63 51 chr3 58552786 58553126 -101046657 - Lx3C LINE L1 -1 6999 6637 9 1031 667 237 78 50 chr3 58553093 58553351 -101046432 - L1VL4 LINE L1 -5599 703 439 9 1031 42 71 0 0 chr3 58553737 58553821 -101045962 + AT_rich Low_complexity Low_complexity 1 84 0 9 1031 857 297 87 11 chr3 58553843 58554293 -101045490 - Charlie2a DNA MER1_type -1829 1032 549 8 1031 226 279 46 11 chr3 58554665 58554752 -101045031 + L1MD LINE L1 5497 5586 -773 9 1031 725 284 80 4 chr3 58555305 58555567 -101044216 + B4A SINE B4 5 286 -6 9 1031 378 330 0 3 chr3 58556410 58556527 -101043256 - B1F1 SINE Alu -1 116 3 9 1031 321 26 0 0 chr3 58557835 58557873 -101041910 + (GCATG)n Simple_repeat Simple_repeat 3 40 0 9 1031 301 191 15 60 chr3 58557979 58558046 -101041737 - PB1D10 SINE Alu -42 75 12 1 1031 6092 48 0 1 chr3 58558839 58559568 -101040215 - L1_Mus1 LINE L1 0 6567 5840 1 1031 207 320 36 80 chr3 58559665 58559777 -101040006 - MIR SINE MIR -142 120 14 1 1031 231 300 199 8 chr3 58559840 58559971 -101039812 + L2c LINE L2 3081 3236 -151 1 1031 243 0 0 0 chr3 58560032 58560059 -101039724 + (TG)n Simple_repeat Simple_repeat 1 27 0 1 1031 378 0 0 0 chr3 58560059 58560100 -101039683 + (GA)n Simple_repeat Simple_repeat 1 42 0 1 1031 366 114 0 0 chr3 58560213 58560283 -101039500 + (A)n Simple_repeat Simple_repeat 1 70 0 1 1031 220 167 0 40 chr3 58560819 58560869 -101038914 + (CAAA)n Simple_repeat Simple_repeat 4 51 0 1 1031 375 335 58 6 chr3 58560882 58561038 -101038745 - MLT1A0 LTR MaLR -41 324 161 1 1031 26 23 0 23 chr3 58561179 58561206 -101038577 + AT_rich Low_complexity Low_complexity 1 27 0 1 1031 1030 171 113 10 chr3 58561206 58561401 -101038382 + B3 SINE B2 2 216 0 1 1031 26 23 0 23 chr3 58561401 58561417 -101038366 + AT_rich Low_complexity Low_complexity 1 16 0 1 1031 585 61 0 0 chr3 58561793 58561875 -101037908 + B1_Mur3 SINE Alu 68 149 0 1 1031 321 26 0 0 chr3 58561875 58561913 -101037870 + (A)n Simple_repeat Simple_repeat 1 38 0 1 1031 693 279 23 5 chr3 58562031 58562247 -101037536 - L1_Mur3 LINE L1 -219 5661 5442 1 1031 3525 258 64 37 chr3 58562256 58562366 -101037417 - RMER1C Other Other -15 1327 1192 1 1031 690 47 0 0 chr3 58562366 58562452 -101037331 + (GGA)n Simple_repeat Simple_repeat 3 88 0 1 1031 3525 258 64 37 chr3 58562452 58563276 -101036507 - RMER1C Other Other -151 1191 369 1 1031 758 279 51 73 chr3 58563279 58563584 -101036199 - L1M2 LINE L1 -1017 5327 5019 1 1031 1329 79 11 17 chr3 58563584 58563765 -101036018 - B2_Mm2 SINE B2 -14 181 2 1 1031 758 289 66 83 chr3 58563765 58563922 -101035861 - L1M2 LINE L1 -1125 5018 4870 1 1031 1274 149 321 31 chr3 58563922 58564212 -101035571 - ORR1D1 LTR MaLR 0 374 1 1 1031 758 289 66 83 chr3 58564212 58564311 -101035472 - L1M2 LINE L1 -1274 4869 4775 1 1031 42 0 0 0 chr3 58564311 58564353 -101035430 + AT_rich Low_complexity Low_complexity 1 42 0 1 1031 779 160 0 0 chr3 58564440 58564559 -101035224 - B1_Mur1 SINE Alu -29 120 2 1 1031 277 281 21 143 chr3 58564562 58564710 -101035073 - L1M2 LINE L1 -1399 4744 4606 1 1031 873 209 80 15 chr3 58564710 58564909 -101034874 - B3 SINE B2 0 216 5 1 1031 277 281 21 143 chr3 58564909 58564997 -101034786 - L1M2 LINE L1 -1538 4605 4537 1 1031 1167 62 7 0 chr3 58565287 58565433 -101034350 + B1_Mus2 SINE Alu 1 147 0 1 1031 384 273 109 0 chr3 58566510 58566620 -101033163 - ORR1E LTR MaLR -237 122 1 1 1031 36225 45 4 3 chr3 58566621 58571983 -101027800 + L1Md_T LINE L1 126 5589 -297 1 1031 8650 31 0 0 chr3 58571983 58572979 -101026804 + L1Md_T LINE L1 5590 6585 0 1 1031 240 35 0 0 chr3 58573004 58573033 -101026750 + (A)n Simple_repeat Simple_repeat 1 29 0 1 1031 458 279 18 0 chr3 58573103 58573214 -101026569 - PB1D10 SINE Alu -4 113 1 1 1031 263 216 126 58 chr3 58573639 58573742 -101026041 + MTEb LTR MaLR 259 368 -11 1 1031 619 120 19 0 chr3 58574479 58574587 -101025196 + (TCC)n Simple_repeat Simple_repeat 2 111 0 1 1031 7463 46 3 3 chr3 58575890 58576803 -101022980 + L1Md_F2 LINE L1 5670 6582 0 1 1031 337 416 26 34 chr3 58577154 58577388 -101022395 + LTR16E2 LTR ERVL 49 280 -288 1 1031 429 299 61 0 chr3 58577618 58577765 -101022018 + Tigger5 DNA MER2_type 36 191 -2215 1 1031 2234 212 44 28 chr3 58578842 58579342 -101020441 + Lx7 LINE L1 6925 7432 -264 1 1031 678 196 19 12 chr3 58579342 58579760 -101020023 + (TG)n Simple_repeat Simple_repeat 1 421 0 1 1031 401 191 11 0 chr3 58579854 58579943 -101019840 + Lx6 LINE L1 7360 7449 -11 1 1031 249 216 22 11 chr3 58579962 58580051 -101019732 + CT-rich Low_complexity Low_complexity 5 94 0 1 1031 324 300 39 39 chr3 58580051 58580155 -101019628 - PB1D10 SINE Alu -13 104 1 1 1031 284 341 40 73 chr3 58580155 58580237 -101019546 - ID SINE ID -143 81 6 1 1031 386 280 87 21 chr3 58580996 58581176 -101018607 - MER63B DNA AcHobo -20 416 262 1 1031 464 287 68 20 chr3 58581490 58581739 -101018044 - RLTR12B LTR ERVK 0 528 268 1 1031 264 296 36 29 chr3 58581807 58581946 -101017837 - RLTR12B LTR ERVK -219 309 170 1 1031 958 212 39 70 chr3 58581971 58582229 -101017554 + RLTR19-int LTR ERVK 4130 4379 -1758 1 1031 633 275 29 50 chr3 58582450 58582691 -101017092 + RMER5 LTR ERV1 143 378 -156 1 1031 2116 142 65 28 chr3 58582756 58583110 -101016673 - ORR1B2 LTR MaLR 0 367 1 1 1031 849 84 21 14 chr3 58583173 58583318 -101016465 + L1_Mus3 LINE L1 6491 6636 -2 1 1031 13771 180 75 50 chr3 58583391 58587527 -101012256 - L1_Mur3 LINE L1 -1407 4473 230 1 1031 1808 145 20 97 chr3 58587527 58587971 -101011812 - RMER17C LTR ERVK 0 410 1 1 1031 3236 226 139 59 chr3 58587971 58588162 -101011621 - L1_Mur3 LINE L1 -7499 229 18 1 1031 408 282 86 86 chr3 58588173 58588464 -101011319 - L1MB8 LINE L1 -116 6062 5772 1 1031 180 77 0 0 chr3 58588476 58588502 -101011281 + (TG)n Simple_repeat Simple_repeat 2 27 0 1 1031 828 262 23 27 chr3 58588728 58588948 -101010835 + ID_B1 SINE B4 2 220 -4 1 1032 245 177 38 12 chr3 58589455 58589535 -101010248 + CT-rich Low_complexity Low_complexity 1 82 0 1 1032 359 298 55 34 chr3 58590357 58590503 -101009280 + ORR1E LTR MaLR 18 166 -193 1 1032 393 22 0 0 chr3 58590588 58590634 -101009149 + (A)n Simple_repeat Simple_repeat 1 46 0 1 1032 234 0 0 0 chr3 58590690 58590716 -101009067 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 1 1032 1761 204 27 39 chr3 58591015 58591427 -101008356 - MTD LTR MaLR -8 411 5 1 1032 22 56 0 0 chr3 58595349 58595385 -101004398 + AT_rich Low_complexity Low_complexity 1 36 0 1 1032 351 0 0 0 chr3 58595405 58595444 -101004339 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 1032 278 250 0 15 chr3 58597530 58597595 -101002188 + Lx8 LINE L1 6343 6406 -1067 1 1032 2743 21 0 0 chr3 58597596 58597934 -101001849 + ORR1A0 LTR MaLR 1 338 -8 1 1032 3067 260 57 16 chr3 58597938 58598779 -101001004 + Lx8 LINE L1 6403 7278 -195 1 1032 476 295 21 14 chr3 58599139 58599280 -101000503 + B1F1 SINE Alu 6 147 -2 1 1032 2696 96 91 0 chr3 58599561 58599947 -100999836 + MTC LTR MaLR 1 421 0 1 1032 264 286 58 35 chr3 58600150 58600237 -100999546 - B1_Mur1 SINE Alu -27 122 34 1 1032 249 33 0 0 chr3 58602744 58602774 -100997009 + (T)n Simple_repeat Simple_repeat 1 30 0 1 1032 936 161 0 7 chr3 58603271 58603421 -100996362 + B1_Mur4 SINE Alu 2 150 0 1 1032 290 279 128 58 chr3 58604910 58605066 -100994717 + MER20 DNA MER1_type 2 168 -51 1 1032 1267 160 0 59 chr3 58605829 58606068 -100993715 - URR1B DNA MER1_type 0 225 1 1 1032 447 171 40 0 chr3 58607914 58607990 -100991793 + ID2 SINE ID 3 81 -2 1 1032 270 281 93 37 chr3 58609147 58609254 -100990529 + PB1 SINE Alu 8 120 -7 1 1032 219 221 43 14 chr3 58609280 58609349 -100990434 + ID4 SINE ID 2 72 -11 1 1032 228 122 0 0 chr3 58609372 58609413 -100990370 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 1032 217 368 0 0 chr3 58609465 58609533 -100990250 - ID4_ SINE ID -11 72 5 1 1032 466 291 22 15 chr3 58609549 58609685 -100990098 - RSINE1 SINE B4 -24 141 5 1 1032 476 244 32 8 chr3 58609707 58609831 -100989952 - B1F SINE Alu -5 144 18 1 1032 261 0 0 0 chr3 58610556 58610585 -100989198 + (GA)n Simple_repeat Simple_repeat 2 30 0 1 1032 244 284 80 27 chr3 58611448 58611560 -100988223 - MLT1D LTR MaLR 0 505 388 1 1032 576 332 65 37 chr3 58612039 58612440 -100987343 - MLT1C LTR MaLR 0 467 56 1 1032 319 310 40 17 chr3 58614913 58615087 -100984696 - MIR SINE MIR -65 197 20 1 1032 1811 203 129 15 chr3 58618468 58618933 -100980850 + RLTR24 LTR ERV1 12 529 0 1 1032 1892 118 10 0 chr3 58619589 58619893 -100979890 - ORR1A4 LTR MaLR -8 321 15 1 1032 225 320 42 88 chr3 58620371 58620611 -100979172 + RLTR14 LTR ERV1 154 382 0 1 1032 23 0 0 0 chr3 58622110 58622133 -100977650 + AT_rich Low_complexity Low_complexity 1 23 0 1 1032 455 73 15 0 chr3 58622259 58622327 -100977456 + (TG)n Simple_repeat Simple_repeat 2 70 0 1 1032 495 226 104 8 chr3 58623320 58623454 -100976329 - B1_Mur3 SINE Alu 0 149 3 1 1032 8206 61 1 1 chr3 58628202 58629622 -100970161 + L1_Mus2 LINE L1 5145 6564 -2 1 1032 513 340 141 56 chr3 58630812 58631279 -100968504 + MER21B LTR ERV1 22 528 -335 1 1032 525 283 63 134 chr3 58631421 58631801 -100967982 - ORR1E LTR MaLR 0 359 7 1 1032 485 299 38 0 chr3 58631832 58631989 -100967794 - Tigger5 DNA MER2_type -71 2335 2173 1 1032 243 298 11 35 chr3 58633238 58633325 -100966458 + MIR3 SINE MIR 76 160 -48 1 1032 295 183 212 61 chr3 58633437 58633536 -100966247 - PB1D10 SINE Alu 0 117 4 1 1032 567 269 50 0 chr3 58633701 58633861 -100965922 + MER58B DNA MER1_type 172 339 -2 1 1032 415 200 144 31 chr3 58634311 58634471 -100965312 + L1MC5 LINE L1 7604 7781 -180 1 1032 384 291 122 26 chr3 58634478 58634707 -100965076 - MLT1J LTR MaLR -230 282 32 1 1032 216 97 0 0 chr3 58635390 58635421 -100964362 + (TGG)n Simple_repeat Simple_repeat 1 31 0 1 1032 214 265 29 14 chr3 58635480 58635549 -100964234 + CT-rich Low_complexity Low_complexity 1 70 0 1 1032 211 226 170 0 chr3 58635575 58635628 -100964155 - B1F1 SINE Alu -46 103 42 1 1032 562 218 64 9 chr3 58635666 58635845 -100963938 + B3 SINE B2 2 189 -4 1 1032 378 173 0 0 chr3 58635877 58635952 -100963831 + GA-rich Low_complexity Low_complexity 2 76 0 1 1032 503 173 125 0 chr3 58636081 58636185 -100963598 + B3A SINE B2 1 117 -81 1 1032 673 281 59 84 chr3 58638214 58638666 -100961117 + MT2B LTR ERVL 1 535 -66 1 1032 608 70 12 0 chr3 58638666 58638752 -100961031 + (TCTA)n Simple_repeat Simple_repeat 4 90 0 1 1032 19975 158 50 14 chr3 58638752 58642591 -100957192 + MERVL_2A-int LTR ERVL 39 4015 -1746 2 1032 1882 166 29 6 chr3 58642602 58642953 -100956830 - ORR1B2 LTR MaLR -8 359 1 2 1032 4706 183 71 12 chr3 58642953 58643999 -100955784 - ORR1B2-int LTR MaLR 0 1509 403 2 1032 9010 158 55 2 chr3 58643999 58645430 -100954353 + MERVL_2A-int LTR ERVL 4089 5595 -166 2 1032 241 190 0 49 chr3 58645448 58645509 -100954274 + ORR1A3-int LTR MaLR 567 624 -1339 2 1032 287 164 0 52 chr3 58645517 58645594 -100954189 + ORR1A3-int LTR MaLR 567 639 -1324 2 1032 406 89 0 0 chr3 58645594 58645650 -100954133 + MERVL_2A-int LTR ERVL 5706 5761 0 2 1032 1753 193 161 62 chr3 58645650 58646135 -100953648 + MT2A LTR ERVL 1 533 0 2 1032 272 232 16 99 chr3 58646865 58647056 -100952727 + (TATATG)n Simple_repeat Simple_repeat 3 177 0 2 1032 399 21 0 0 chr3 58647740 58647788 -100951995 + (TG)n Simple_repeat Simple_repeat 1 48 0 2 1032 912 256 32 21 chr3 58648364 58648647 -100951136 - B4A SINE B4 -6 286 1 2 1032 622 105 19 0 chr3 58649049 58649154 -100950629 + (TTCC)n Simple_repeat Simple_repeat 3 109 0 2 1032 1835 177 120 68 chr3 58649353 58649777 -100950006 + RLTR41 LTR ERV1 1 446 0 2 1032 681 310 28 24 chr3 58651079 58651370 -100948413 + B4A SINE B4 1 292 0 2 1032 835 259 61 0 chr3 58652071 58652268 -100947515 - B3 SINE B2 -7 209 1 2 1032 435 19 0 0 chr3 58652636 58652688 -100947095 + (TCTA)n Simple_repeat Simple_repeat 4 55 0 2 1032 366 342 97 31 chr3 58653985 58654211 -100945572 + MER115 DNA Tip100 89 329 -364 2 1032 242 298 179 40 chr3 58655753 58656078 -100943705 - L2b LINE L2 0 3426 3057 2 1032 39333 6 0 1 chr3 58656082 58661873 -100937910 + L1Md_A LINE L1 1 5586 -297 2 1032 9216 2 0 0 chr3 58661873 58662869 -100936914 + L1Md_A LINE L1 5587 6582 0 2 1032 715 249 43 29 chr3 58662917 58663198 -100936585 - RLTR15 LTR ERVK -7 352 68 2 1032 357 379 42 31 chr3 58664421 58664710 -100935073 + L2 LINE L2 2181 2472 -947 2 1032 218 340 10 21 chr3 58665469 58665565 -100934218 - MER5B DNA MER1_type -60 118 24 2 1032 441 36 0 0 chr3 58666142 58666197 -100933586 + (TG)n Simple_repeat Simple_repeat 1 55 0 2 1032 238 313 122 0 chr3 58667016 58667131 -100932652 + LTR50 LTR ERVL 8 136 -659 2 1032 309 51 0 0 chr3 58667671 58667710 -100932073 + (TA)n Simple_repeat Simple_repeat 2 40 0 2 1032 438 108 0 0 chr3 58667713 58667778 -100932005 + (TG)n Simple_repeat Simple_repeat 2 66 0 2 1032 26 50 0 0 chr3 58669389 58669429 -100930354 + AT_rich Low_complexity Low_complexity 1 40 0 2 1032 414 0 0 0 chr3 58669462 58669508 -100930275 + (TA)n Simple_repeat Simple_repeat 2 47 0 2 1032 185 267 60 96 chr3 58669864 58669947 -100929836 - L2a LINE L2 -18 3408 3329 2 1032 554 292 27 186 chr3 58670686 58670872 -100928911 + B4A SINE B4 3 191 -101 2 1032 444 19 0 0 chr3 58670872 58670925 -100928858 + (TGG)n Simple_repeat Simple_repeat 1 53 0 2 1032 554 292 27 186 chr3 58670925 58670946 -100928837 + B4A SINE B4 192 192 -100 2 1032 207 0 0 0 chr3 58670946 58670969 -100928814 + (GA)n Simple_repeat Simple_repeat 1 23 0 2 1032 554 292 27 186 chr3 58670969 58670999 -100928784 + B4A SINE B4 192 200 -92 2 1032 595 214 13 85 chr3 58670999 58671152 -100928631 - B1_Mur1 SINE Alu -3 146 5 2 1032 554 292 27 186 chr3 58671152 58671240 -100928543 + B4A SINE B4 201 278 -14 2 1032 195 100 0 0 chr3 58671278 58671308 -100928475 + (CA)n Simple_repeat Simple_repeat 2 31 0 2 1032 243 255 56 40 chr3 58671336 58671412 -100928371 - MIRc SINE MIR -167 101 5 2 1032 314 177 25 0 chr3 58671873 58671952 -100927831 + (TGGA)n Simple_repeat Simple_repeat 3 83 0 2 1032 609 14 0 0 chr3 58671955 58672025 -100927758 + (GGAA)n Simple_repeat Simple_repeat 2 71 0 2 1032 342 248 108 18 chr3 58672537 58672648 -100927135 - RMER10A LTR ERVL -4 438 318 2 1032 252 280 0 26 chr3 58672696 58672773 -100927010 + G-rich Low_complexity Low_complexity 4 78 0 2 1032 261 0 0 0 chr3 58673180 58673209 -100926574 + (TC)n Simple_repeat Simple_repeat 2 30 0 2 1032 564 292 93 58 chr3 58673228 58673636 -100926147 + BGLII_B LTR ERVK 1 414 -27 2 1032 513 0 0 0 chr3 58673656 58673713 -100926070 + (TG)n Simple_repeat Simple_repeat 2 58 0 2 1032 374 283 34 50 chr3 58674015 58674134 -100925649 - RSINE1 SINE B4 -44 121 5 2 1032 318 194 0 0 chr3 58674348 58674415 -100925368 + (CAT)n Simple_repeat Simple_repeat 3 69 0 2 1032 341 237 0 51 chr3 58674436 58674534 -100925249 - RSINE1 SINE B4 -70 95 3 2 1032 569 286 143 13 chr3 58674645 58675154 -100924629 - L1MD LINE L1 -570 5609 5032 2 1032 243 0 0 0 chr3 58675156 58675183 -100924600 + (TC)n Simple_repeat Simple_repeat 2 28 0 2 1032 405 0 0 0 chr3 58675183 58675227 -100924556 + (TG)n Simple_repeat Simple_repeat 2 46 0 2 1032 181 250 45 0 chr3 58676531 58676575 -100923208 + L4 LINE RTE 712 757 -1272 2 1032 192 200 21 43 chr3 58676839 58676886 -100922897 + MIRc SINE MIR 114 159 -109 2 1032 672 221 217 36 chr3 58676890 58677115 -100922668 + L1MA6 LINE L1 5946 6223 -77 2 1032 513 0 0 0 chr3 58677115 58677172 -100922611 + (CA)n Simple_repeat Simple_repeat 2 58 0 2 1032 672 221 217 36 chr3 58677172 58677199 -100922584 + L1MA6 LINE L1 6224 6244 -56 2 1032 423 281 39 45 chr3 58678280 58678459 -100921324 - MER5B DNA MER1_type 0 178 1 2 1032 653 302 104 12 chr3 58679357 58679608 -100920175 + RCHARR1 DNA MER1_type 1 274 -700 2 1032 2567 224 37 10 chr3 58679748 58680371 -100919412 + RCHARR1 DNA MER1_type 334 973 -1 2 1032 620 208 0 40 chr3 58680483 58680608 -100919175 + PB1D9 SINE Alu 1 120 0 2 1032 3005 52 0 3 chr3 58680722 58681069 -100918714 + ORR1A1 LTR MaLR 1 346 0 2 1032 1530 84 0 5 chr3 58681479 58681670 -100918113 + B2_Mm2 SINE B2 1 190 -5 2 1032 359 285 78 12 chr3 58681787 58681954 -100917829 + L1MA6 LINE L1 6052 6229 -71 2 1032 769 241 133 5 chr3 58681957 58682145 -100917638 + B3 SINE B2 1 212 -4 2 1032 488 165 206 0 chr3 58682233 58682330 -100917453 + B1_Mm SINE Alu 1 117 -30 2 1032 269 26 26 0 chr3 58682336 58682374 -100917409 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 2 1032 969 172 0 0 chr3 58682415 58682595 -100917188 + CT-rich Low_complexity Low_complexity 1 180 0 2 1032 198 103 0 0 chr3 58682597 58682626 -100917157 + (TTTC)n Simple_repeat Simple_repeat 2 30 0 2 1032 817 145 0 0 chr3 58682626 58682743 -100917040 + B1_Mur2 SINE Alu 22 138 -11 2 1032 588 62 0 0 chr3 58682783 58682864 -100916919 + (CA)n Simple_repeat Simple_repeat 1 81 0 2 1032 225 196 0 0 chr3 58684888 58684939 -100914844 + (CA)n Simple_repeat Simple_repeat 2 52 0 2 1032 515 201 120 24 chr3 58685509 58685718 -100914065 + MER33 DNA MER1_type 43 271 -53 2 1032 285 268 0 27 chr3 58685759 58685832 -100913951 + ID4 SINE ID 4 74 -9 2 1032 306 0 0 0 chr3 58686644 58686678 -100913105 + (CA)n Simple_repeat Simple_repeat 1 34 0 2 1032 22 0 0 0 chr3 58687777 58687799 -100911984 + AT_rich Low_complexity Low_complexity 1 22 0 2 1032 222 118 0 0 chr3 58688240 58688274 -100911509 + (CA)n Simple_repeat Simple_repeat 1 34 0 2 1032 198 71 0 0 chr3 58688274 58688302 -100911481 + (GA)n Simple_repeat Simple_repeat 1 28 0 2 1032 427 328 23 23 chr3 58688321 58688449 -100911334 - RSINE1 SINE B4 -9 156 29 2 1032 247 267 0 0 chr3 58688519 58688594 -100911189 + A-rich Low_complexity Low_complexity 1 75 0 2 1032 264 131 0 76 chr3 58690007 58690073 -100909710 + (TCTCTG)n Simple_repeat Simple_repeat 6 66 0 2 1032 274 237 8 8 chr3 58690077 58690196 -100909587 + CT-rich Low_complexity Low_complexity 2 120 0 2 1032 876 126 6 11 chr3 58690200 58690376 -100909407 + (TC)n Simple_repeat Simple_repeat 1 175 0 2 1032 396 0 0 0 chr3 58690511 58690555 -100909228 + (CTG)n Simple_repeat Simple_repeat 1 44 0 2 1032 257 316 52 17 chr3 58691881 58691997 -100907786 - MER5B DNA MER1_type -1 177 58 2 1032 226 222 22 0 chr3 58692795 58692840 -100906943 + GA-rich Low_complexity Low_complexity 5 50 0 2 1032 229 343 0 0 chr3 58693982 58694052 -100905731 + BC1_Mm scRNA scRNA 3 72 -80 2 1032 426 258 102 59 chr3 58694419 58694738 -100905045 - MTEb LTR MaLR 0 379 3 2 1032 1133 200 86 9 chr3 58694876 58695108 -100904675 - MTC LTR MaLR 0 421 172 2 1032 267 312 111 30 chr3 58695520 58695619 -100904164 - LTR33 LTR ERVL -300 215 109 2 1032 529 328 49 102 chr3 58695718 58696130 -100903653 - L1M3 LINE L1 -2021 4125 3726 2 1032 955 195 0 0 chr3 58696130 58696279 -100903504 + B1_Mur2 SINE Alu 1 149 0 2 1032 529 328 49 102 chr3 58696279 58696315 -100903468 - L1M3 LINE L1 -2421 3725 3701 2 1032 209 313 0 15 chr3 58696324 58696392 -100903391 + CT-rich Low_complexity Low_complexity 4 70 0 2 1032 328 296 0 0 chr3 58696395 58696466 -100903317 - ID4 SINE ID -12 71 1 2 1032 392 302 38 0 chr3 58696468 58696574 -100903209 - PB1D9 SINE Alu -6 114 5 2 1032 619 288 62 66 chr3 58696576 58696977 -100902806 - L1M3 LINE L1 -2447 3693 3296 2 1032 579 229 50 25 chr3 58696977 58697098 -100902685 + PB1 SINE Alu 4 127 0 2 1032 619 288 62 66 chr3 58697098 58697149 -100902634 - L1M3 LINE L1 -2845 3295 3243 2 1032 1190 289 102 50 chr3 58697261 58697760 -100902023 - MT2A LTR ERVL -6 527 3 2 1032 29 47 0 0 chr3 58697971 58698014 -100901769 + AT_rich Low_complexity Low_complexity 1 43 0 2 1032 436 235 118 0 chr3 58698983 58699102 -100900681 - ID_B1 SINE B4 -8 216 84 2 1032 235 308 53 88 chr3 58699187 58699301 -100900482 - PB1D7 SINE Alu -10 110 1 2 1032 327 105 0 0 chr3 58699798 58699855 -100899928 + (A)n Simple_repeat Simple_repeat 1 57 0 2 1032 782 250 149 35 chr3 58700009 58700270 -100899513 - B4A SINE B4 0 292 2 2 1032 423 323 39 25 chr3 58700388 58700636 -100899147 + MIR SINE MIR 17 262 0 2 1032 231 347 102 132 chr3 58701277 58701858 -100897925 - MLT1K LTR MaLR -6 589 27 2 1032 219 271 0 0 chr3 58702174 58702222 -100897561 + MER5B DNA MER1_type 2 49 -129 2 1032 532 237 134 27 chr3 58702238 58702500 -100897283 + L1M3 LINE L1 4059 4367 -1773 2 1032 1181 89 0 0 chr3 58702516 58702662 -100897121 + B1_Mus2 SINE Alu 1 146 -1 2 1032 217 51 25 25 chr3 58702663 58702703 -100897080 + (CAAAAA)n Simple_repeat Simple_repeat 3 42 0 2 1032 1242 87 0 0 chr3 58702705 58702878 -100896905 + (GAAA)n Simple_repeat Simple_repeat 3 175 0 2 1032 1312 85 20 36 chr3 58702890 58703085 -100896698 + B2_Mm2 SINE B2 3 194 -1 2 1032 785 302 48 17 chr3 58703174 58703531 -100896252 + L1M3 LINE L1 4424 4791 -1349 2 1032 1019 287 39 21 chr3 58703531 58703812 -100895971 + B4A SINE B4 1 286 -6 2 1032 232 289 24 0 chr3 58703866 58703949 -100895834 + L1M3 LINE L1 4784 4868 -1275 2 1032 965 287 64 44 chr3 58703946 58704344 -100895439 + L1MB2 LINE L1 5686 6093 -78 3 1032 1705 194 80 9 chr3 58704344 58704693 -100895090 - ORR1D1 LTR MaLR 0 374 1 3 1032 965 287 64 44 chr3 58704693 58704749 -100895034 + L1MB2 LINE L1 6094 6149 -22 3 1032 207 204 0 0 chr3 58704901 58704945 -100894838 + T-rich Low_complexity Low_complexity 1 44 0 3 1032 446 305 7 28 chr3 58704947 58705092 -100894691 - ID_B1 SINE B4 -1 223 82 3 1032 676 220 27 34 chr3 58705125 58705271 -100894512 + B1F SINE Alu 5 149 0 3 1032 1599 58 0 35 chr3 58705430 58705627 -100894156 + B2_Mm2 SINE B2 1 190 -5 3 1032 261 163 0 0 chr3 58705703 58705752 -100894031 + (TA)n Simple_repeat Simple_repeat 1 49 0 3 1032 876 105 0 0 chr3 58705752 58705895 -100893888 + (TG)n Simple_repeat Simple_repeat 2 144 0 3 1032 1060 130 7 0 chr3 58707004 58707158 -100892625 - B2_Mm2 SINE B2 -40 155 1 3 1032 483 275 9 9 chr3 58707631 58707741 -100892042 + PB1D10 SINE Alu 1 110 -7 3 1032 3816 223 34 28 chr3 58707835 58708260 -100891523 - RCHARR1 DNA MER1_type -34 940 523 3 1032 811 203 105 21 chr3 58708260 58708451 -100891332 - B3 SINE B2 -8 208 2 3 1032 3816 223 34 28 chr3 58708451 58708957 -100890826 - RCHARR1 DNA MER1_type -452 522 3 3 1032 847 280 114 37 chr3 58708962 58709233 -100890550 + B4 SINE B4 1 292 0 3 1032 395 217 109 65 chr3 58709233 58709366 -100890417 + HAL1-3A_ME LINE L1 1972 2110 -748 3 1032 336 127 0 0 chr3 58709412 58709467 -100890316 + (GGGA)n Simple_repeat Simple_repeat 3 57 0 3 1032 447 303 16 0 chr3 58710080 58710202 -100889581 - ID_B1 SINE B4 -20 204 81 3 1032 267 401 60 16 chr3 58710466 58710651 -100889132 + LTR33 LTR ERVL 247 439 -76 3 1032 312 70 0 0 chr3 58711606 58711649 -100888134 + (CA)n Simple_repeat Simple_repeat 2 44 0 3 1032 249 239 57 132 chr3 58711763 58711869 -100887914 + MER68 LTR ERVL 82 179 -384 3 1032 548 269 126 9 chr3 58711871 58712085 -100887698 + L1_Rod LINE L1 5608 5846 -1 3 1032 673 241 94 122 chr3 58712199 58712487 -100887296 - Lx6 LINE L1 -2 7458 7179 3 1032 12836 111 103 15 chr3 58712489 58715634 -100884149 + L1Md_F LINE L1 504 4234 -1649 3 1032 8244 174 30 41 chr3 58715650 58718005 -100881778 - L1_Mur3 LINE L1 -1712 4168 892 3 1032 21 57 0 0 chr3 58718711 58718746 -100881037 + AT_rich Low_complexity Low_complexity 1 35 0 3 1032 1176 313 122 9 chr3 58718752 58719171 -100880612 + Lx8 LINE L1 6238 6703 -770 3 1032 1359 250 9 22 chr3 58719176 58719499 -100880284 + Lx6 LINE L1 7126 7444 -16 3 1032 902 298 107 27 chr3 58719497 58719938 -100879845 + Lx8 LINE L1 6704 7179 -294 3 1 522 263 36 21 chr3 58720176 58720316 -100879467 + MER68 LTR ERVL 164 305 -258 3 1033 834 169 39 22 chr3 58720403 58720584 -100879199 - RMER10A LTR ERVL -2 440 257 3 1033 341 259 134 64 chr3 58720595 58720752 -100879031 + MER68 LTR ERVL 396 563 0 3 1033 953 253 174 0 chr3 58720812 58721065 -100878718 - MTE2b LTR MaLR -82 297 1 3 1033 220 355 13 0 chr3 58721330 58721343 -100878440 - ID4_ SINE ID 0 83 7 3 1033 237 333 0 0 chr3 58721343 58721406 -100878377 - tRNA-Ala-GCY_ tRNA tRNA -12 63 1 3 1033 1544 73 10 10 chr3 58722627 58722820 -100876963 + B2_Mm2 SINE B2 1 193 -2 3 1033 1136 36 0 0 chr3 58722968 58723106 -100876677 + B1_Mus1 SINE Alu 11 148 0 3 1033 1852 133 185 18 chr3 58723174 58723503 -100876280 + ORR1C2 LTR MaLR 1 384 0 3 1033 314 245 0 0 chr3 58723550 58723623 -100876160 + ID4 SINE ID 1 73 -10 3 1033 222 62 0 0 chr3 58723925 58723957 -100875826 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 3 1033 182 279 112 34 chr3 58724174 58724263 -100875520 + L2c LINE L2 2414 2509 -910 3 1033 255 61 0 0 chr3 58724342 58724375 -100875408 + (TC)n Simple_repeat Simple_repeat 1 33 0 3 1033 207 146 0 0 chr3 58724572 58724613 -100875170 + (CA)n Simple_repeat Simple_repeat 2 42 0 3 1033 219 366 88 42 chr3 58724738 58725056 -100874727 + L2c LINE L2 3050 3358 -17 3 1033 380 370 58 52 chr3 58725419 58725710 -100874073 + L3 LINE CR1 4097 4389 -100 3 1033 217 273 44 29 chr3 58726229 58726297 -100873486 - ID4_ SINE ID -7 76 8 3 1033 198 0 0 0 chr3 58726812 58726834 -100872949 + (CACCC)n Simple_repeat Simple_repeat 5 26 0 3 1033 309 120 10 52 chr3 58727147 58727244 -100872539 + (CCCCG)n Simple_repeat Simple_repeat 1 93 0 3 1033 1258 54 0 0 chr3 58727466 58727613 -100872170 + B1_Mm SINE Alu 1 147 0 3 1033 1666 205 68 66 chr3 58728658 58728958 -100870825 + RMER10A LTR ERVL 2 318 -124 3 1033 1583 149 152 22 chr3 58728958 58729321 -100870462 - RMER17C LTR ERVK 0 410 1 3 1033 1666 205 68 66 chr3 58729321 58729459 -100870324 + RMER10A LTR ERVL 319 441 -1 3 1033 825 119 56 56 chr3 58729546 58729688 -100870095 + B1_Mur3 SINE Alu 2 143 -6 3 1033 386 258 92 93 chr3 58729867 58730338 -100869445 - RMER10A LTR ERVL -16 426 12 3 1033 357 384 101 29 chr3 58730786 58731062 -100868721 + LTR33 LTR ERVL 103 398 -117 3 1033 1089 67 82 0 chr3 58731342 58731477 -100868306 + B1_Mus1 SINE Alu 3 148 0 3 1033 280 59 43 29 chr3 58731478 58731548 -100868235 + (CAAAAA)n Simple_repeat Simple_repeat 3 73 0 3 1033 508 128 19 56 chr3 58731574 58731682 -100868101 - Lx9 LINE L1 -7 7637 7534 3 1033 309 183 0 0 chr3 58732553 58732613 -100867170 + CT-rich Low_complexity Low_complexity 1 60 0 3 1033 3183 86 2 8 chr3 58732685 58733085 -100866698 - L1_Mus1 LINE L1 -1 6566 6169 3 1033 209 306 30 57 chr3 58733141 58733247 -100866536 + L2c LINE L2 3274 3392 -34 3 1033 553 269 8 63 chr3 58733399 58733526 -100866257 + B1F SINE Alu 1 120 -29 3 1033 1106 220 14 9 chr3 58733674 58733885 -100865898 - B3 SINE B2 0 216 5 3 1033 1203 94 21 37 chr3 58734823 58735011 -100864772 - B2_Mm2 SINE B2 -8 187 3 3 1033 1112 233 29 0 chr3 58735497 58735707 -100864076 - ID_B1 SINE B4 -2 222 7 3 1033 234 271 38 125 chr3 58735752 58735832 -100863951 + B1F SINE Alu 16 88 -61 3 1033 468 0 0 0 chr3 58736021 58736073 -100863710 + (TTTA)n Simple_repeat Simple_repeat 3 54 0 3 1033 1260 62 6 0 chr3 58736073 58736234 -100863549 - B2_Mm1t SINE B2 -30 163 2 3 1033 343 340 59 30 chr3 58736593 58736796 -100862987 - MIR SINE MIR -14 248 40 3 1033 1064 176 136 0 chr3 58736798 58736997 -100862786 + URR1A DNA MER1_type 1 226 0 3 1033 289 250 93 108 chr3 58737006 58737115 -100862668 + MER5A1 DNA MER1_type 20 123 -43 3 1033 4733 50 26 11 chr3 58737115 58737681 -100862102 + L1Md_F2 LINE L1 5997 6571 -11 3 1033 289 250 93 108 chr3 58737681 58737710 -100862073 + MER5A1 DNA MER1_type 124 156 -10 3 1033 405 0 0 0 chr3 58737723 58737768 -100862015 + (CA)n Simple_repeat Simple_repeat 2 46 0 3 1033 374 0 0 0 chr3 58737823 58737872 -100861911 + L1Md_T LINE L1 6534 6582 0 3 1033 433 304 36 59 chr3 58737914 58738270 -100861513 - L1M6 LINE L1 -4872 1624 1277 3 1033 252 0 0 0 chr3 58738671 58738699 -100861084 + (TTTA)n Simple_repeat Simple_repeat 1 28 0 3 1033 249 225 0 0 chr3 58739258 58739347 -100860436 + CT-rich Low_complexity Low_complexity 1 89 0 3 1033 327 85 0 0 chr3 58739347 58739394 -100860389 + (TG)n Simple_repeat Simple_repeat 2 48 0 3 1033 259 230 129 39 chr3 58739395 58739473 -100860310 - PB1D10 SINE Alu -55 94 11 3 1033 248 242 14 70 chr3 58739905 58739976 -100859807 - ID4 SINE ID -16 67 1 3 1033 253 250 18 0 chr3 58740460 58740516 -100859267 - MLT1B LTR MaLR 0 390 334 3 1033 332 224 129 0 chr3 58740663 58740748 -100859035 - ID_B1 SINE B4 0 224 129 3 1033 733 275 114 41 chr3 58740927 58741314 -100858469 - L1MC3 LINE L1 -643 7142 6728 3 1033 569 268 70 19 chr3 58741339 58741495 -100858288 - B3 SINE B2 -50 166 3 3 1033 292 328 160 0 chr3 58741922 58742041 -100857742 + B1_Mur1 SINE Alu 12 149 0 3 1033 281 26 0 26 chr3 58742517 58742556 -100857227 + (CAAAC)n Simple_repeat Simple_repeat 2 39 0 3 1033 6598 37 1 13 chr3 58742848 58743902 -100855881 - L1Md_Gf LINE L1 -4317 1569 419 3 1033 2422 229 174 24 chr3 58744129 58745237 -100854546 - RMER1B Other Other 0 1066 1 3 1033 23 68 0 0 chr3 58746153 58746197 -100853586 + AT_rich Low_complexity Low_complexity 1 44 0 3 1033 268 243 70 14 chr3 58748245 58748316 -100851467 + MLT1J1 LTR MaLR 93 167 -277 3 1033 379 249 141 70 chr3 58748397 58748441 -100851342 + ID_B1 SINE B4 58 223 -67 3 1033 482 212 9 88 chr3 58748441 58748555 -100851228 + PB1D10 SINE Alu 12 116 -1 3 1033 465 267 40 48 chr3 58748559 58748685 -100851098 + RSINE1 SINE B4 4 128 -37 3 1033 279 0 0 0 chr3 58748695 58748726 -100851057 + (CA)n Simple_repeat Simple_repeat 1 31 0 3 1033 287 331 6 45 chr3 58748868 58749045 -100850738 - Lx8 LINE L1 -4 7469 7300 3 1033 654 0 66 0 chr3 58749098 58749189 -100850594 + (TGAG)n Simple_repeat Simple_repeat 3 99 0 3 1033 895 238 49 0 chr3 58749189 58749412 -100850371 - Lx8 LINE L1 -398 7075 6842 3 1033 315 257 44 0 chr3 58749653 58749766 -100850017 - Lx7 LINE L1 -1 7695 7578 3 1033 490 170 0 26 chr3 58749767 58749882 -100849901 + CT-rich Low_complexity Low_complexity 6 117 0 3 1033 345 165 30 20 chr3 58749959 58750058 -100849725 - Lx7 LINE L1 -281 7415 7316 3 1033 183 359 50 115 chr3 58750226 58750366 -100849417 + L2 LINE L2 2353 2489 -930 3 1033 1162 270 28 80 chr3 58750366 58750764 -100849019 + MTE2a LTR MaLR 3 379 0 3 1033 183 359 50 115 chr3 58750764 58750993 -100848790 + L2 LINE L2 2490 2706 -713 3 1033 618 14 0 0 chr3 58750993 58751064 -100848719 + (TC)n Simple_repeat Simple_repeat 2 72 0 3 1033 1282 48 0 0 chr3 58751064 58751209 -100848574 - B1_Mm SINE Alu -2 145 1 3 1033 183 359 50 115 chr3 58751209 58751256 -100848527 + L2 LINE L2 2707 2743 -676 3 1033 603 257 269 42 chr3 58751365 58751674 -100848109 - MTEa LTR MaLR 0 379 1 3 1033 1712 21 16 0 chr3 58751892 58752082 -100847701 + B2_Mm1a SINE B2 1 193 0 3 1033 435 218 46 28 chr3 58753567 58753697 -100846086 - PB1D10 SINE Alu 0 150 13 3 1033 608 264 21 7 chr3 58754387 58754532 -100845251 - B1F SINE Alu 0 149 3 3 1033 7248 135 17 9 chr3 58755322 58757327 -100842456 - Lx LINE L1 -2 6652 4638 3 1033 5948 62 7 2 chr3 58757310 58758521 -100841262 - L1VL4 LINE L1 -1922 1637 421 4 1033 228 100 0 0 chr3 58758524 58758554 -100841229 - L1VL4 LINE L1 -6260 42 13 4 1033 25 31 0 0 chr3 58758999 58759031 -100840752 + AT_rich Low_complexity Low_complexity 1 32 0 4 1033 381 43 0 0 chr3 58759434 58759481 -100840302 + (TCTA)n Simple_repeat Simple_repeat 2 48 0 4 1033 356 312 67 45 chr3 58760208 58760476 -100839307 - HAL1 LINE L1 -1414 1093 820 4 1033 457 259 43 0 chr3 58760801 58760917 -100838866 + B1F SINE Alu 6 126 -23 4 1033 261 282 144 62 chr3 58761119 58761255 -100838528 + MLT1E2 LTR MaLR 126 278 -349 4 1033 1442 85 20 0 chr3 58761255 58761455 -100838328 + RMER17D LTR ERVK 1 204 -685 4 1033 326 240 75 65 chr3 58761516 58761577 -100838206 + MLT1E2 LTR MaLR 355 422 -205 4 1033 2240 136 162 11 chr3 58761577 58761941 -100837842 - MTC LTR MaLR 0 421 3 4 1033 326 296 119 85 chr3 58761941 58762108 -100837675 + MLT1E2 LTR MaLR 423 651 -29 4 1033 480 343 57 60 chr3 58762360 58762676 -100837107 + ORR1E LTR MaLR 11 325 -34 4 1033 375 279 35 0 chr3 58762901 58762996 -100836787 - B1F1 SINE Alu -20 100 3 4 1033 752 21 21 0 chr3 58763159 58763256 -100836527 + (GAAA)n Simple_repeat Simple_repeat 4 102 0 4 1033 234 0 0 0 chr3 58764219 58764245 -100835538 + (T)n Simple_repeat Simple_repeat 1 26 0 4 1033 339 288 76 9 chr3 58764355 58764370 -100835413 + B1F SINE Alu 1 148 -1 4 1033 329 319 41 32 chr3 58764370 58764493 -100835290 + ID_B1 SINE B4 100 223 -1 4 1033 216 156 0 0 chr3 58764544 58764576 -100835207 - PB1D9 SINE Alu -79 41 10 4 1033 264 59 0 0 chr3 58764656 58764690 -100835093 + (TTCA)n Simple_repeat Simple_repeat 4 37 0 4 1033 207 341 102 0 chr3 58764706 58764794 -100834989 - L2a LINE L2 -30 3396 3300 4 1033 308 43 22 0 chr3 58765266 58765312 -100834471 + (CAAAA)n Simple_repeat Simple_repeat 2 48 0 4 1033 312 329 55 14 chr3 58766630 58766775 -100833008 + RMER15 LTR ERVL 385 535 -40 4 1033 298 295 53 0 chr3 58767394 58767489 -100832294 - MIR SINE MIR -122 140 41 4 1033 374 237 374 0 chr3 58767907 58768038 -100831745 - B3A SINE B2 -16 182 3 4 1033 192 152 0 0 chr3 58768050 58768083 -100831700 + T-rich Low_complexity Low_complexity 1 33 0 4 1033 1023 75 0 15 chr3 58768083 58768219 -100831564 - B1_Mus1 SINE Alu 0 148 15 4 1033 262 241 70 18 chr3 58768125 58768239 -100831544 - ORR1B1-int LTR MaLR -755 754 635 4 1033 863 210 97 0 chr3 58768361 58768556 -100831227 - B3 SINE B2 0 216 3 4 1033 1241 81 0 0 chr3 58768672 58768820 -100830963 + B1_Mus1 SINE Alu 1 148 0 4 1033 396 259 40 97 chr3 58769467 58769591 -100830192 + L2c LINE L2 3270 3386 -1 4 1033 3011 150 56 24 chr3 58769829 58770329 -100829454 + Lx4A LINE L1 6542 7057 -1 4 1033 538 252 35 71 chr3 58771981 58772122 -100827661 - RSINE1 SINE B4 -28 137 2 4 1033 26 0 0 0 chr3 58772527 58772553 -100827230 + AT_rich Low_complexity Low_complexity 1 26 0 4 1033 1398 201 38 7 chr3 58772562 58772853 -100826930 - Lx5 LINE L1 -9 7041 6742 4 1033 9372 145 20 9 chr3 58772859 58774213 -100825570 - Lx5 LINE L1 -458 6592 5218 4 1033 2424 64 112 3 chr3 58774213 58774525 -100825258 - ORR1A1 LTR MaLR 0 346 1 4 1033 9372 127 18 14 chr3 58774525 58775337 -100824446 - Lx5 LINE L1 -660 5217 4397 4 1033 281 24 49 0 chr3 58775399 58775440 -100824343 + (TTTTTG)n Simple_repeat Simple_repeat 6 48 0 4 1033 1261 48 0 20 chr3 58775440 58775590 -100824193 - B1_Mm SINE Alu 0 147 1 4 1033 445 111 14 10 chr3 58775590 58775680 -100824103 - Lx5 LINE L1 -1731 4155 4069 4 1033 2060 315 70 11 chr3 58776134 58776789 -100822994 - MTE-int LTR MaLR -43 1537 844 4 1033 536 299 51 0 chr3 58776915 58777072 -100822711 + MER5A1 DNA MER1_type 2 166 0 4 1033 1063 233 88 93 chr3 58777220 58777687 -100822096 + MT2B LTR ERVL 1 601 0 4 1033 460 277 57 0 chr3 58777830 58777971 -100821812 + B1F2 SINE Alu 1 149 0 4 1033 1421 156 158 59 chr3 58778101 58778455 -100821328 - ORR1B1 LTR MaLR 0 394 6 4 1033 445 289 211 36 chr3 58778763 58779154 -100820629 - L1ME1 LINE L1 -39 6140 5676 4 1033 2301 89 32 0 chr3 58779154 58779467 -100820316 + ORR1A2 LTR MaLR 5 327 0 4 1033 379 303 163 40 chr3 58779467 58779558 -100820225 - L1ME1 LINE L1 -765 5679 5595 4 1033 402 242 84 0 chr3 58779558 58779653 -100820130 + U6 snRNA snRNA 5 107 0 4 1033 815 90 0 8 chr3 58779658 58779781 -100820002 + (GGAA)n Simple_repeat Simple_repeat 3 124 0 4 1033 315 306 183 36 chr3 58779781 58779936 -100819847 - L1ME1 LINE L1 -855 5589 5389 4 1033 565 182 7 119 chr3 58779947 58780090 -100819693 + B1_Mm SINE Alu 8 134 -13 4 1033 233 29 29 0 chr3 58780090 58780124 -100819659 + (CAAAA)n Simple_repeat Simple_repeat 1 35 0 4 1033 235 199 167 51 chr3 58780248 58780386 -100819397 + Charlie1a DNA MER1_type 1288 1441 -14 4 1033 283 278 153 10 chr3 58780386 58780484 -100819299 + ID_B1 SINE B4 92 203 -21 4 1033 431 305 51 28 chr3 58780920 58781173 -100818610 - L1M4 LINE L1 -849 5297 5039 4 1033 209 303 0 50 chr3 58781371 58781451 -100818332 + MIR SINE MIR 10 85 -177 4 1033 273 227 0 15 chr3 58782329 58782396 -100817387 + (CA)n Simple_repeat Simple_repeat 2 67 0 4 1033 290 87 22 0 chr3 58782569 58782615 -100817168 + (TTTA)n Simple_repeat Simple_repeat 1 47 0 4 1033 1191 35 0 7 chr3 58782615 58782760 -100817023 - B1_Mm SINE Alu -2 145 2 4 1033 649 182 161 0 chr3 58782802 58782945 -100816838 - U2 snRNA snRNA -18 170 5 4 1033 28 79 0 0 chr3 58783360 58783423 -100816360 + AT_rich Low_complexity Low_complexity 1 63 0 4 1033 1468 60 5 0 chr3 58783522 58783706 -100816077 + B2_Mm1a SINE B2 2 186 -7 4 1033 578 256 101 0 chr3 58783752 58783881 -100815902 - Lx8 LINE L1 -151 7322 7181 4 1033 450 79 0 0 chr3 58783908 58783971 -100815812 + (GGGGA)n Simple_repeat Simple_repeat 1 63 0 4 1033 244 211 103 68 chr3 58784034 58784151 -100815632 + Lx8 LINE L1 7353 7473 0 4 1033 37 39 0 0 chr3 58784252 58784303 -100815480 + AT_rich Low_complexity Low_complexity 1 51 0 4 1033 314 245 36 40 chr3 58784591 58784699 -100815084 + PB1D7 SINE Alu 10 118 -2 4 1033 25 51 0 0 chr3 58784997 58785036 -100814747 + AT_rich Low_complexity Low_complexity 1 39 0 4 1033 1315 85 15 78 chr3 58785100 58785304 -100814479 + B2_Mm2 SINE B2 2 192 -3 4 1033 544 232 95 160 chr3 58786271 58786502 -100813281 + B3 SINE B2 1 216 0 4 1033 406 196 87 0 chr3 58786876 58786968 -100812815 + LTR41B LTR ERVL 108 207 -551 4 1033 450 256 33 8 chr3 58787333 58787455 -100812328 + MER58A DNA MER1_type 13 137 -87 4 1033 315 160 63 11 chr3 58787506 58787601 -100812182 + LTR41B LTR ERVL 636 735 -23 4 1033 375 289 80 51 chr3 58787624 58787861 -100811922 + L1MC4a LINE L1 5671 5914 -1968 4 1033 318 294 64 0 chr3 58788056 58788165 -100811618 - Tigger5 DNA MER2_type -2209 197 82 4 1033 362 206 15 15 chr3 58788372 58788505 -100811278 + RLTR31_Mur LTR ERVK 39 195 -246 4 1033 297 0 0 0 chr3 58788506 58788539 -100811244 + (CA)n Simple_repeat Simple_repeat 1 33 0 4 1033 180 0 0 0 chr3 58788760 58788780 -100811003 + (TTG)n Simple_repeat Simple_repeat 2 21 0 4 1033 476 275 183 40 chr3 58788996 58789318 -100810465 - LTR16A1 LTR ERVL -54 402 35 4 1033 522 374 90 21 chr3 58789901 58790466 -100809317 - MLT2F LTR ERVL -59 604 1 4 1033 291 175 0 0 chr3 58790974 58791031 -100808752 + G-rich Low_complexity Low_complexity 2 58 0 4 1033 613 92 0 20 chr3 58791781 58791881 -100807902 + (GGGGA)n Simple_repeat Simple_repeat 5 102 0 4 1033 643 297 93 34 chr3 58791921 58792189 -100807594 - Lx8 LINE L1 -284 7189 6906 4 1033 415 238 157 28 chr3 58792209 58792378 -100807405 - MLT2B4 LTR ERVL -329 225 38 4 1033 3215 24 59 0 chr3 58792921 58793295 -100806488 + MTA_Mm LTR MaLR 1 396 0 4 1033 859 256 31 65 chr3 58793752 58794045 -100805738 + B4A SINE B4 2 284 -8 4 1033 376 232 0 20 chr3 58794769 58794870 -100804913 + PB1D10 SINE Alu 18 116 -1 4 1033 201 244 0 22 chr3 58795274 58795320 -100804463 + G-rich Low_complexity Low_complexity 2 46 0 4 1033 781 264 0 16 chr3 58795543 58795732 -100804051 + B4 SINE B4 106 291 -1 4 1033 406 239 193 0 chr3 58797171 58797280 -100802503 + B1F SINE Alu 10 139 -10 4 1033 757 317 126 41 chr3 58798465 58798972 -100800811 - MLT1F2 LTR MaLR -10 550 1 4 1033 252 77 0 0 chr3 58799681 58799720 -100800063 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 4 1033 907 268 85 16 chr3 58800398 58800716 -100799067 + MLT1A0 LTR MaLR 24 363 -2 4 1033 239 273 0 38 chr3 58801560 58801640 -100798143 + B4A SINE B4 79 155 -137 4 1033 10163 64 0 1 chr3 58801901 58803173 -100796610 - L1Md_F2 LINE L1 0 5883 4613 4 1033 5751 49 0 1 chr3 58803173 58803867 -100795916 + L1Md_F2 LINE L1 5890 6582 0 4 1033 255 317 12 0 chr3 58804740 58804822 -100794961 + RMER15 LTR ERVL 380 462 -113 4 1033 418 167 34 45 chr3 58805054 58805142 -100794641 + PB1D10 SINE Alu 11 97 -20 4 1033 563 257 88 0 chr3 58805833 58805969 -100793814 + ID_B1 SINE B4 8 155 -69 4 1033 377 267 27 54 chr3 58805904 58806015 -100793768 + PB1D10 SINE Alu 10 117 0 4 1033 483 301 23 0 chr3 58806220 58806353 -100793430 - RSINE1 SINE B4 -28 137 2 4 1033 298 279 104 0 chr3 58806365 58806519 -100793264 + MER33 DNA MER1_type 155 324 0 4 1033 203 184 0 0 chr3 58806680 58806718 -100793065 + T-rich Low_complexity Low_complexity 1 38 0 4 1033 239 234 0 0 chr3 58806938 58806985 -100792798 + CT-rich Low_complexity Low_complexity 2 48 0 4 1033 1293 201 19 178 chr3 58807744 58808155 -100791628 + ORR1B2 LTR MaLR 1 346 -38 4 1033 274 277 30 58 chr3 58809069 58809227 -100790556 + MIRb SINE MIR 37 193 -75 4 1033 28 0 0 0 chr3 58810656 58810684 -100789099 + GC_rich Low_complexity Low_complexity 1 28 0 4 1033 275 293 50 10 chr3 58813129 58813229 -100786554 - PB1D10 SINE Alu -5 112 9 4 1033 207 0 0 0 chr3 58814922 58814945 -100784838 + (CAAA)n Simple_repeat Simple_repeat 1 23 0 4 1033 320 284 29 0 chr3 58814978 58815080 -100784703 - MER5A DNA MER1_type -79 110 6 5 1033 1130 70 0 7 chr3 58815225 58815369 -100784414 + B1_Mus1 SINE Alu 5 147 -1 5 1033 274 274 77 19 chr3 58816584 58816688 -100783095 + MER5A DNA MER1_type 80 189 0 5 1033 22 0 0 0 chr3 58817809 58817831 -100781952 + AT_rich Low_complexity Low_complexity 1 22 0 5 1033 228 260 0 0 chr3 58817920 58817988 -100781795 - 7SLRNA srpRNA srpRNA -231 83 17 5 1033 319 341 95 69 chr3 58818634 58818823 -100780960 + MER63A DNA AcHobo 1 194 -16 5 1033 212 59 29 0 chr3 58818879 58818913 -100780870 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 5 1033 641 118 0 52 chr3 58819590 58819724 -100780059 - Lx4A LINE L1 -5 7053 6927 5 1033 207 0 0 0 chr3 58820006 58820029 -100779754 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 5 1033 346 82 47 12 chr3 58820316 58820402 -100779381 + (TTTTG)n Simple_repeat Simple_repeat 2 90 0 5 1033 304 168 68 78 chr3 58820823 58820926 -100778857 + MER20 DNA MER1_type 23 124 -95 5 1033 283 245 37 130 chr3 58821398 58821506 -100778277 - MLT1A LTR MaLR -16 358 261 5 1033 745 114 48 12 chr3 58821554 58821722 -100778061 + C-rich Low_complexity Low_complexity 3 176 0 5 1033 21 36 0 0 chr3 58822164 58822192 -100777591 + AT_rich Low_complexity Low_complexity 1 28 0 5 1033 290 217 75 11 chr3 58822333 58822426 -100777357 - Charlie1b DNA MER1_type -198 325 227 5 1033 921 219 59 5 chr3 58823472 58823674 -100776109 - B3 SINE B2 -3 213 1 5 1033 185 65 0 31 chr3 58825375 58825407 -100774376 + (CAGG)n Simple_repeat Simple_repeat 3 33 0 5 1033 204 125 0 0 chr3 58825678 58825710 -100774073 + (A)n Simple_repeat Simple_repeat 1 32 0 5 1033 793 164 27 20 chr3 58827545 58827694 -100772089 - B1_Mur4 SINE Alu 0 150 1 5 1033 275 305 138 5 chr3 58828233 58828421 -100771362 - MLT1C LTR MaLR -4 463 251 5 1033 289 331 36 0 chr3 58828469 58828608 -100771175 - MLT1C LTR MaLR -288 179 36 5 1033 452 268 58 13 chr3 58831572 58831727 -100768056 - RSINE1 SINE B4 0 165 4 5 1033 842 151 7 33 chr3 58833668 58833819 -100765964 + B1_Mus2 SINE Alu 1 147 0 5 1033 218 81 0 26 chr3 58833832 58833870 -100765913 + (TAA)n Simple_repeat Simple_repeat 2 38 0 5 1033 243 0 0 0 chr3 58833891 58833918 -100765865 + (TG)n Simple_repeat Simple_repeat 2 28 0 5 1033 188 260 138 38 chr3 58834119 58834199 -100765584 + MIR SINE MIR 121 208 -54 5 1033 784 211 80 5 chr3 58834357 58834557 -100765226 + B3 SINE B2 2 216 0 5 1033 356 270 10 39 chr3 58834647 58834751 -100765032 + RSINE1 SINE B4 9 109 -56 5 1033 1121 238 53 19 chr3 58834891 58835251 -100764532 - MTEb LTR MaLR 0 379 8 5 1033 368 331 8 0 chr3 58836152 58836282 -100763501 - B1F SINE Alu -1 148 18 5 1033 1257 85 0 0 chr3 58836403 58836579 -100763204 + (TTC)n Simple_repeat Simple_repeat 2 177 0 5 1033 722 147 0 8 chr3 58836581 58836711 -100763072 + CT-rich Low_complexity Low_complexity 3 131 0 5 1033 234 0 0 0 chr3 58836762 58836788 -100762995 + (TTAA)n Simple_repeat Simple_repeat 1 26 0 5 1033 246 62 0 0 chr3 58837451 58837483 -100762300 + (CA)n Simple_repeat Simple_repeat 2 33 0 5 1033 250 229 54 54 chr3 58839228 58839302 -100760481 + PB1D10 SINE Alu 10 83 -34 5 1033 1620 172 29 177 chr3 58839952 58840398 -100759385 - ORR1C2 LTR MaLR -4 380 1 5 1033 423 38 0 0 chr3 58842011 58842064 -100757719 + (CA)n Simple_repeat Simple_repeat 2 54 0 5 1033 288 77 0 0 chr3 58842621 58842660 -100757123 + (CAGA)n Simple_repeat Simple_repeat 2 40 0 5 1033 305 247 71 0 chr3 58844679 58844764 -100755019 + MamRep137 DNA TcMar? 157 247 -197 5 1033 288 0 0 0 chr3 58845109 58845141 -100754642 + (CA)n Simple_repeat Simple_repeat 1 32 0 5 1033 591 15 0 0 chr3 58845141 58845208 -100754575 + (TA)n Simple_repeat Simple_repeat 2 69 0 5 1033 209 111 0 27 chr3 58846416 58846453 -100753330 + (CCCCCA)n Simple_repeat Simple_repeat 3 38 0 5 1033 1315 153 18 18 chr3 58847996 58848216 -100751567 - URR1A DNA MER1_type -2 224 5 5 1033 1305 201 159 65 chr3 58848483 58848866 -100750917 + MTD LTR MaLR 1 419 0 5 1033 261 224 100 56 chr3 58848904 58848994 -100750789 - L1MC4 LINE L1 -682 7360 7267 5 1033 395 279 9 26 chr3 58849012 58849126 -100750657 - PB1D10 SINE Alu -5 112 1 5 1033 25 51 0 0 chr3 58849149 58849188 -100750595 + AT_rich Low_complexity Low_complexity 1 39 0 5 1033 225 246 17 34 chr3 58849202 58849261 -100750522 + PB1D9 SINE Alu 2 59 -61 5 1033 239 302 0 10 chr3 58849265 58849362 -100750421 + GA-rich Low_complexity Low_complexity 2 97 0 5 1033 425 215 0 1 chr3 58849364 58849453 -100750330 + B1_Mur1 SINE Alu 42 130 -20 5 1033 590 250 49 16 chr3 58849455 58849638 -100750145 + B3 SINE B2 1 189 -27 5 1033 404 95 16 0 chr3 58849923 58849986 -100749797 - ORR1D1 LTR MaLR -1 373 310 5 1033 438 20 0 0 chr3 58850002 58850053 -100749730 + (CAGG)n Simple_repeat Simple_repeat 4 54 0 5 1033 653 0 13 0 chr3 58850147 58850224 -100749559 + (GA)n Simple_repeat Simple_repeat 1 78 0 5 1033 449 48 47 12 chr3 58850257 58850342 -100749441 + (TTTTG)n Simple_repeat Simple_repeat 1 88 0 5 1033 1223 34 0 13 chr3 58850342 58850491 -100749292 - B1_Mm SINE Alu 0 147 1 5 1033 1427 79 26 0 chr3 58850499 58850688 -100749095 - B2_Mm2 SINE B2 -1 194 1 5 1033 793 150 19 25 chr3 58850688 58850845 -100748938 - ORR1D1 LTR MaLR -218 156 1 5 1034 3582 159 113 68 chr3 58851908 58852760 -100747023 - RMER19B LTR ERVK -12 890 1 5 1034 791 266 38 94 chr3 58853765 58854001 -100745782 - ORR1C2 LTR MaLR 0 384 172 5 1034 288 0 0 0 chr3 58854001 58854033 -100745750 + (TC)n Simple_repeat Simple_repeat 1 32 0 5 1034 791 266 38 94 chr3 58854033 58854190 -100745593 - ORR1C2 LTR MaLR -213 171 13 5 1034 1157 63 7 0 chr3 58854210 58854353 -100745430 - B1_Mus1 SINE Alu -4 144 1 5 1034 297 0 0 0 chr3 58854552 58854585 -100745198 + (CA)n Simple_repeat Simple_repeat 2 34 0 5 1034 637 206 21 14 chr3 58854693 58854836 -100744947 + B1_Mur2 SINE Alu 4 147 -2 5 1034 1030 243 124 26 chr3 58854921 58855118 -100744665 + MTD LTR MaLR 3 195 -224 5 1034 231 36 0 0 chr3 58855118 58855146 -100744637 + (CAAAA)n Simple_repeat Simple_repeat 5 32 0 5 1034 1030 243 124 26 chr3 58855146 58855328 -100744455 + MTD LTR MaLR 196 418 -1 5 1034 549 221 142 82 chr3 58855465 58855805 -100743978 + MTD LTR MaLR 10 413 -6 5 1034 671 268 128 63 chr3 58855824 58856028 -100743755 - Lx7 LINE L1 -309 5982 5744 5 1034 222 37 0 0 chr3 58856028 58856055 -100743728 + (TTA)n Simple_repeat Simple_repeat 2 28 0 5 1034 671 248 69 36 chr3 58856055 58856260 -100743523 - Lx7 LINE L1 -1953 5743 5517 5 1034 291 71 0 0 chr3 58856676 58856718 -100743065 + (TG)n Simple_repeat Simple_repeat 2 43 0 5 1034 532 278 116 64 chr3 58856721 58857062 -100742721 + MTD LTR MaLR 1 361 -18 5 1034 471 248 174 59 chr3 58857067 58857286 -100742497 - B4 SINE B4 0 292 49 5 1034 983 255 30 96 chr3 58857287 58857651 -100742132 + Lx6 LINE L1 7118 7457 -3 5 1034 347 283 40 32 chr3 58859439 58859563 -100740220 - RSINE1 SINE B4 -32 133 9 5 1034 240 302 84 0 chr3 58859721 58859840 -100739943 - L1MC4a LINE L1 -1901 5981 5853 5 1034 314 219 0 85 chr3 58860040 58860170 -100739613 - RCHARR1 DNA MER1_type -127 847 729 5 1034 2834 301 23 50 chr3 58860171 58860217 -100739566 + Lx9 LINE L1 6377 6414 -1230 5 1034 506 0 0 45 chr3 58860217 58860284 -100739499 + (CA)n Simple_repeat Simple_repeat 2 65 0 5 1034 2834 301 23 50 chr3 58860284 58861310 -100738473 + Lx9 LINE L1 6415 7420 -224 5 1034 372 178 0 0 chr3 58862197 58862270 -100737513 + (TA)n Simple_repeat Simple_repeat 2 74 0 5 1034 699 238 77 11 chr3 58863893 58864076 -100735707 - B3A SINE B2 -1 197 3 5 1034 1591 166 123 25 chr3 58864706 58865071 -100734712 - RMER15 LTR ERVL 0 575 175 5 1034 1034 181 38 33 chr3 58865086 58865298 -100734485 + URR1B DNA MER1_type 9 221 -4 5 1034 385 91 0 0 chr3 58865366 58865421 -100734362 - RMER15 LTR ERVL -508 67 13 5 1034 883 286 146 43 chr3 58865423 58866228 -100733555 - L1MB7 LINE L1 -93 6085 5197 5 1034 791 224 50 16 chr3 58866656 58866838 -100732945 + B3 SINE B2 23 210 -6 5 1034 2078 153 31 60 chr3 58867590 58868006 -100731777 - MTB_Mm LTR MaLR 0 407 4 5 1034 232 183 208 14 chr3 58868835 58868907 -100730876 - B3 SINE B2 -127 89 4 5 1034 355 296 47 58 chr3 58869092 58869264 -100730519 - B4A SINE B4 -120 172 3 5 1034 535 261 127 5 chr3 58869273 58869485 -100730298 + MER2 DNA MER2_type 16 253 -92 5 1034 254 347 82 11 chr3 58869532 58869800 -100729983 - B4A SINE B4 -4 288 2 5 1034 381 246 184 7 chr3 58870482 58870615 -100729168 - ID_B1 SINE B4 -64 228 80 5 1034 369 0 0 0 chr3 58870953 58870994 -100728789 + (TG)n Simple_repeat Simple_repeat 2 42 0 5 1034 1416 75 43 0 chr3 58871871 58872058 -100727725 + B2_Mm2 SINE B2 1 195 0 5 1034 268 256 11 58 chr3 58872656 58872743 -100727040 - PB1D9 SINE Alu -32 88 6 5 1034 251 85 0 21 chr3 58873560 58873608 -100726175 + (TTTTTG)n Simple_repeat Simple_repeat 2 48 0 5 1034 593 289 46 0 chr3 58873733 58873885 -100725898 - RSINE1 SINE B4 -1 164 6 5 1034 701 281 67 77 chr3 58874159 58874444 -100725339 - B4 SINE B4 -9 283 2 5 1034 26 30 0 0 chr3 58874502 58874535 -100725248 + AT_rich Low_complexity Low_complexity 1 33 0 5 1034 324 70 0 0 chr3 58874637 58874680 -100725103 + (TG)n Simple_repeat Simple_repeat 2 44 0 5 1034 180 0 0 0 chr3 58875213 58875233 -100724550 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 5 1034 248 146 0 127 chr3 58875258 58875321 -100724462 - B2_Mm2 SINE B2 -94 101 47 5 1034 1302 81 12 0 chr3 58875364 58875537 -100724246 - B2_Mm1t SINE B2 -14 179 5 5 1034 279 0 0 0 chr3 58876015 58876046 -100723737 + (TTTTA)n Simple_repeat Simple_repeat 3 33 0 5 1034 322 223 124 5 chr3 58876422 58876632 -100723151 + MER33 DNA MER1_type 19 255 -69 6 1034 359 206 138 51 chr3 58876643 58876781 -100723002 - B3 SINE B2 -8 208 59 6 1034 351 324 0 0 chr3 58877436 58877544 -100722239 - PB1D7 SINE Alu -12 108 1 6 1034 399 314 28 7 chr3 58878484 58878625 -100721158 + MER2 DNA MER2_type 195 338 -7 5 1034 366 23 0 0 chr3 58882092 58882135 -100717648 + (TG)n Simple_repeat Simple_repeat 2 44 0 6 1034 646 255 91 10 chr3 58882228 58882426 -100717357 + B3 SINE B2 3 216 0 6 1034 1052 147 6 6 chr3 58882462 58882640 -100717143 - URR1A DNA MER1_type 0 226 49 6 1034 1033 251 53 72 chr3 58882927 58883287 -100716496 - ORR1E LTR MaLR -4 355 3 6 1034 473 47 0 15 chr3 58883834 58883899 -100715884 + (TCCCC)n Simple_repeat Simple_repeat 4 67 0 6 1034 394 243 36 9 chr3 58883924 58884036 -100715747 - PB1D10 SINE Alu -2 115 1 6 1034 249 257 0 41 chr3 58886238 58886311 -100713472 + G-rich Low_complexity Low_complexity 6 75 0 6 1034 419 157 0 24 chr3 58886392 58886477 -100713306 + CT-rich Low_complexity Low_complexity 4 86 0 6 1034 1422 63 21 10 chr3 58886477 58886670 -100713113 - B2_Mm2 SINE B2 0 195 1 6 1034 702 201 7 14 chr3 58887487 58887633 -100712150 - B1_Mur3 SINE Alu 0 149 5 6 1034 3999 126 2 13 chr3 58889427 58890031 -100709752 + Lx2B LINE L1 6402 6998 -2 6 1034 333 115 0 0 chr3 58891195 58891247 -100708536 - URR1B DNA MER1_type 0 225 174 6 1034 409 13 51 51 chr3 58891635 58891714 -100708069 + (TTTTG)n Simple_repeat Simple_repeat 1 79 0 6 1034 241 265 59 0 chr3 58891950 58892018 -100707765 - MTE2b LTR MaLR -1 378 307 6 1034 461 255 56 14 chr3 58892103 58892246 -100707537 - MTE2b LTR MaLR -230 149 1 6 1034 495 280 12 58 chr3 58892534 58892705 -100707078 + B3A SINE B2 3 165 -33 6 1034 1049 57 43 0 chr3 58892790 58892930 -100706853 + B1_Mm SINE Alu 2 147 0 6 1034 1456 182 225 24 chr3 58893042 58893380 -100706403 - MTB_Mm LTR MaLR 0 407 2 6 1034 5572 154 130 18 chr3 58893380 58894508 -100705275 - MTB_Mm-int LTR MaLR 0 1258 2 6 1034 216 97 0 0 chr3 58894517 58894548 -100705235 + (TC)n Simple_repeat Simple_repeat 2 32 0 6 1034 1296 90 17 6 chr3 58894549 58894728 -100705055 - B2_Mm2 SINE B2 -14 181 1 6 1034 1978 166 22 53 chr3 58894730 58895144 -100704639 - MTB_Mm LTR MaLR -6 401 1 6 1034 333 0 0 0 chr3 58895763 58895800 -100703983 + (T)n Simple_repeat Simple_repeat 1 37 0 6 1034 320 247 98 61 chr3 58898785 58898947 -100700836 + L1MD3 LINE L1 7807 7956 -39 6 1034 312 27 0 0 chr3 58899660 58899697 -100700086 + (TG)n Simple_repeat Simple_repeat 2 38 0 6 1034 860 204 17 87 chr3 58899817 58900048 -100699735 - B3 SINE B2 0 216 2 6 1034 606 290 0 0 chr3 58900098 58900243 -100699540 + ID_B1 SINE B4 80 224 0 6 1034 543 208 34 8 chr3 58900636 58900758 -100699025 - B1F1 SINE Alu -9 140 17 6 1034 339 316 7 29 chr3 58900758 58900773 -100699010 - ID_B1 SINE B4 -9 215 82 6 1034 198 136 0 0 chr3 58902303 58902347 -100697436 + (A)n Simple_repeat Simple_repeat 1 44 0 6 1034 296 259 174 26 chr3 58903293 58903408 -100696375 + ID_B1 SINE B4 83 214 -10 6 1034 360 0 0 0 chr3 58903410 58903450 -100696333 + (CAAAA)n Simple_repeat Simple_repeat 1 40 0 6 1034 341 222 81 0 chr3 58903968 58904067 -100695716 - RSINE1 SINE B4 -6 159 53 6 1034 483 256 8 8 chr3 58906193 58906315 -100693468 + B1F1 SINE Alu 9 130 -19 6 1034 412 281 70 25 chr3 58906410 58906567 -100693216 - RSINE1 SINE B4 0 165 2 6 1034 404 279 0 35 chr3 58907806 58907921 -100691862 - PB1D10 SINE Alu -3 114 4 6 1034 404 202 21 21 chr3 58907978 58908074 -100691709 - PB1D10 SINE Alu 0 117 22 6 1034 2303 310 69 46 chr3 58908330 58909438 -100690345 - Lx9 LINE L1 -192 7452 6320 6 1034 447 19 0 0 chr3 58909441 58909493 -100690290 + (CA)n Simple_repeat Simple_repeat 2 53 0 6 1034 654 37 0 0 chr3 58909591 58909672 -100690111 + (TATATG)n Simple_repeat Simple_repeat 4 84 0 6 1034 28 0 0 0 chr3 58910047 58910075 -100689708 + AT_rich Low_complexity Low_complexity 1 28 0 6 1034 1339 324 104 64 chr3 58910181 58911104 -100688679 - Lx9 LINE L1 -171 7473 6514 6 1034 2006 191 141 7 chr3 58911101 58911549 -100688234 - Lx2B LINE L1 0 7000 6493 6 1034 2447 114 67 89 chr3 58911651 58911779 -100688004 - RLTR19 LTR ERVK -39 460 323 6 1034 1365 85 11 11 chr3 58911779 58911969 -100687814 + B2_Mm1t SINE B2 1 190 -3 6 1034 2447 114 67 89 chr3 58911969 58912302 -100687481 - RLTR19 LTR ERVK -177 322 9 6 1034 447 19 0 0 chr3 58912839 58912891 -100686892 + (TATG)n Simple_repeat Simple_repeat 4 55 0 6 1034 236 302 174 30 chr3 58912893 58913060 -100686723 - RMER17B LTR ERVK -2 956 766 6 1034 1600 246 22 52 chr3 58913095 58913474 -100686309 - RMER17B LTR ERVK -174 784 429 6 1034 531 56 0 0 chr3 58913474 58913545 -100686238 + (GA)n Simple_repeat Simple_repeat 1 71 0 6 1034 1600 246 22 52 chr3 58913545 58913663 -100686120 - RMER17B LTR ERVK -530 428 302 6 1034 240 35 0 0 chr3 58913663 58913692 -100686091 + (GAA)n Simple_repeat Simple_repeat 2 30 0 6 1034 1818 167 58 39 chr3 58913692 58914123 -100685660 - RMER17B LTR ERVK -519 439 1 6 1034 248 181 28 0 chr3 58914133 58914205 -100685578 + (TTTA)n Simple_repeat Simple_repeat 1 74 0 6 1034 1965 113 24 10 chr3 58914216 58914510 -100685273 - Lx4A LINE L1 -692 6366 6069 6 1034 3717 107 13 5 chr3 58914507 58915062 -100684721 + L1_Mur2 LINE L1 3809 4367 -1510 6 1034 193 77 77 0 chr3 58915190 58915229 -100684554 + CT-rich Low_complexity Low_complexity 4 45 0 6 1034 911 120 7 0 chr3 58915253 58915395 -100684388 - B1_Mus1 SINE Alu 0 148 6 6 1034 355 234 67 75 chr3 58915298 58915418 -100684365 - MT2B LTR ERVL -344 257 139 6 1034 468 233 21 50 chr3 58915531 58915671 -100684112 + URR1B DNA MER1_type 90 225 0 6 1034 425 242 118 0 chr3 58915682 58915835 -100683948 - Lx9 LINE L1 -88 7556 7386 6 1034 3002 209 105 82 chr3 58916630 58917426 -100682357 + Lx6 LINE L1 5751 6571 -889 6 1034 1158 75 0 0 chr3 58917426 58917573 -100682210 + B1_Mus1 SINE Alu 2 148 0 6 1034 3002 209 105 82 chr3 58917573 58917646 -100682137 + Lx6 LINE L1 6572 6640 -820 6 1034 21 0 0 0 chr3 58918790 58918811 -100680972 + AT_rich Low_complexity Low_complexity 1 21 0 6 1034 556 198 0 9 chr3 58920150 58920262 -100679521 + L1_Mur3 LINE L1 1310 1420 -4460 6 1034 748 302 36 76 chr3 58921123 58921424 -100678359 - B4 SINE B4 0 292 4 6 1034 1148 41 7 0 chr3 58921682 58921828 -100677955 + (TG)n Simple_repeat Simple_repeat 1 147 0 6 1034 507 229 0 0 chr3 58921831 58921936 -100677847 - B3A SINE B2 -81 117 13 6 1034 396 103 0 0 chr3 58923242 58923300 -100676483 + (TG)n Simple_repeat Simple_repeat 2 59 0 6 1034 882 144 126 11 chr3 58924226 58924408 -100675375 + URR1A DNA MER1_type 1 203 -23 6 1034 327 191 0 0 chr3 58924758 58924826 -100674957 + (TATG)n Simple_repeat Simple_repeat 3 70 0 6 1034 326 177 25 0 chr3 58926278 58926357 -100673426 + (TATG)n Simple_repeat Simple_repeat 2 82 0 6 1034 222 118 0 0 chr3 58926544 58926578 -100673205 + (TG)n Simple_repeat Simple_repeat 1 34 0 6 1034 353 250 83 0 chr3 58926616 58926712 -100673071 - RSINE1 SINE B4 -39 126 23 6 1034 735 234 66 20 chr3 58926760 58926956 -100672827 - B3 SINE B2 -11 205 1 6 1034 225 0 0 0 chr3 58927234 58927259 -100672524 + (TCTG)n Simple_repeat Simple_repeat 2 26 0 6 1034 203 0 0 36 chr3 58929351 58929379 -100670404 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 6 1034 848 214 64 10 chr3 58929934 58930137 -100669646 + B3 SINE B2 3 216 0 6 1034 696 0 0 0 chr3 58930513 58930596 -100669187 - L1Md_T LINE L1 0 6582 6500 6 1034 2392 230 46 55 chr3 58931337 58931994 -100667789 - Lx5 LINE L1 -345 6705 6055 6 1034 1029 150 0 0 chr3 58932593 58932773 -100667010 + (CA)n Simple_repeat Simple_repeat 1 180 0 6 1034 207 0 0 0 chr3 58935763 58935786 -100663997 + (T)n Simple_repeat Simple_repeat 1 23 0 6 1034 282 208 0 0 chr3 58936453 58936506 -100663277 - PB1D7 SINE Alu -65 55 3 6 1034 766 274 85 10 chr3 58936530 58936825 -100662958 - L1MB3 LINE L1 -66 6117 5801 6 1034 624 77 0 0 chr3 58939401 58939492 -100660291 + (CA)n Simple_repeat Simple_repeat 2 92 0 6 1034 207 312 61 44 chr3 58940539 58940653 -100659130 + MIR SINE MIR 17 132 -130 6 1034 341 236 56 11 chr3 58941078 58941168 -100658615 - HAL1-3A_ME LINE L1 -789 2069 1976 6 1034 681 236 12 53 chr3 58941171 58941341 -100658442 - RSINE1 SINE B4 0 165 3 6 1034 215 225 0 0 chr3 58942931 58942971 -100656812 + (TG)n Simple_repeat Simple_repeat 2 41 0 6 1034 273 89 0 0 chr3 58943645 58943690 -100656093 + (CAGA)n Simple_repeat Simple_repeat 3 47 0 6 1034 3538 38 5 0 chr3 58945129 58945523 -100654260 - MTA_Mm LTR MaLR 0 396 1 6 1034 216 0 0 0 chr3 58946627 58946651 -100653132 + (A)n Simple_repeat Simple_repeat 1 24 0 6 1034 330 310 21 14 chr3 58946903 58947047 -100652736 - B1_Mur1 SINE Alu -3 146 2 6 1034 340 273 0 0 chr3 58947778 58947844 -100651939 + tRNA-Ala-GCY_ tRNA tRNA 1 66 -9 6 1034 267 261 14 0 chr3 58947945 58948014 -100651769 + (TATG)n Simple_repeat Simple_repeat 3 72 0 6 1034 3389 68 0 0 chr3 58948810 58949209 -100650574 + L1_Mus1 LINE L1 6169 6567 0 6 1034 590 246 79 14 chr3 58949730 58949870 -100649913 - B1_Mur1 SINE Alu 0 149 1 6 1034 565 261 90 6 chr3 58949887 58950064 -100649719 - B3A SINE B2 -4 194 3 6 1034 253 309 72 0 chr3 58950233 58950372 -100649411 + L1ME2 LINE L1 4982 5130 -1016 6 1034 432 111 340 0 chr3 58950421 58950531 -100649252 + ORR1D2 LTR MaLR 220 368 -2 6 1034 280 284 162 18 chr3 58950724 58950835 -100648948 + ID_B1 SINE B4 93 219 -5 6 1034 411 294 113 67 chr3 58951023 58951361 -100648422 + L1ME2 LINE L1 5622 5974 -188 6 1034 626 266 0 0 chr3 58952727 58952851 -100646932 + RSINE1 SINE B4 4 127 -38 6 1034 387 0 0 0 chr3 58952873 58952916 -100646867 + (CA)n Simple_repeat Simple_repeat 2 44 0 7 1034 1035 129 106 16 chr3 58954244 58954433 -100645350 + Lx2B LINE L1 6471 6676 -324 7 1034 490 263 157 7 chr3 58954661 58954814 -100644969 - MER5A DNA MER1_type -8 181 6 7 1034 180 150 0 0 chr3 58956557 58956574 -100643209 + (A)n Simple_repeat Simple_repeat 1 17 0 7 1034 234 0 0 0 chr3 58956574 58956600 -100643183 + (CCAA)n Simple_repeat Simple_repeat 2 27 0 7 1034 180 150 0 0 chr3 58956600 58956622 -100643161 + (A)n Simple_repeat Simple_repeat 1 22 0 7 1034 24 0 0 0 chr3 58957918 58957942 -100641841 + AT_rich Low_complexity Low_complexity 1 24 0 7 1034 496 244 16 156 chr3 58958101 58958325 -100641458 - MER2 DNA MER2_type -8 337 147 7 1034 209 402 22 0 chr3 58958649 58958741 -100641042 - L2a LINE L2 -28 3398 3305 7 1034 636 14 0 0 chr3 58958840 58958913 -100640870 + (GA)n Simple_repeat Simple_repeat 2 74 0 7 1034 1715 32 11 0 chr3 58959191 58959381 -100640402 - B2_Mm1t SINE B2 0 193 2 7 1034 527 266 67 52 chr3 58960587 58960797 -100638986 - Lx9 LINE L1 -171 7473 7261 7 1034 1027 276 87 60 chr3 58961305 58961686 -100638097 - Lx9 LINE L1 -452 7192 6802 7 1034 293 251 2 0 chr3 58961681 58961748 -100638035 + Lx9 LINE L1 6749 6808 -836 7 1034 1720 281 67 29 chr3 58962630 58963368 -100636415 + L1M2 LINE L1 4467 5239 -904 7 1034 522 0 0 0 chr3 58963368 58963426 -100636357 + (TCTA)n Simple_repeat Simple_repeat 1 58 0 7 1034 1418 313 57 68 chr3 58963426 58963798 -100635985 + L1M2 LINE L1 5212 5565 -315 7 1034 439 279 85 32 chr3 58963836 58964025 -100635758 - RMER15 LTR ERVL 0 575 377 7 1034 297 272 16 80 chr3 58964205 58964478 -100635305 + L1MEc LINE L1 2193 2450 -3950 7 1034 801 276 34 108 chr3 58964877 58965202 -100634581 + MTE2a LTR MaLR 74 374 -5 7 1034 416 246 20 60 chr3 58965471 58965622 -100634161 + Lx6 LINE L1 7290 7434 -26 7 1034 248 219 0 0 chr3 58965650 58965714 -100634069 - Lx9 LINE L1 0 7644 7581 7 1034 239 146 0 0 chr3 58965714 58965755 -100634028 - URR1B DNA MER1_type -10 215 175 7 1034 962 296 124 18 chr3 58966116 58966550 -100633233 - Lx9 LINE L1 -171 7473 6994 7 1034 250 226 19 0 chr3 58966554 58966607 -100633176 + CT-rich Low_complexity Low_complexity 3 56 0 7 1034 1940 223 49 39 chr3 58966615 58967105 -100632678 - RMER5 LTR ERV1 -36 498 4 7 1034 268 269 15 0 chr3 58967892 58967959 -100631824 - Lx9 LINE L1 -648 6996 6929 7 1034 287 269 0 32 chr3 58967947 58968053 -100631730 - L1_Rod LINE L1 -866 5014 4906 7 1034 2115 252 118 52 chr3 58968053 58969078 -100630705 - L1_Rod LINE L1 -1122 4725 3633 7 1034 4145 246 84 32 chr3 58969052 58970601 -100629182 - L1_Rod LINE L1 -2994 2853 1225 7 1034 1881 214 57 52 chr3 58970594 58971152 -100628631 - L1_Rod LINE L1 -38 5809 5249 7 1034 387 0 0 0 chr3 58971897 58971940 -100627843 + (TG)n Simple_repeat Simple_repeat 2 44 0 7 1034 979 296 11 0 chr3 58971978 58972238 -100627545 - B4A SINE B4 -29 263 1 7 1034 192 125 0 0 chr3 58972516 58972548 -100627235 + (TG)n Simple_repeat Simple_repeat 2 33 0 7 1034 436 319 21 36 chr3 58972562 58972702 -100627081 - RSINE1 SINE B4 -25 140 3 7 1034 491 295 39 0 chr3 58974561 58974690 -100625093 - ID_B1 SINE B4 0 224 91 7 1034 262 321 71 9 chr3 58974900 58975013 -100624770 + MLT1A0 LTR MaLR 243 362 -3 7 1034 3118 70 35 20 chr3 58975162 58975556 -100624227 - MTB LTR MaLR 0 400 1 7 1034 7480 105 10 62 chr3 58975556 58976711 -100623072 - MTB-int LTR MaLR 0 1098 3 7 1034 1446 105 100 30 chr3 58976715 58976997 -100622786 - MT2C_Mm LTR ERVL 0 475 65 7 1034 25 0 0 0 chr3 58977320 58977345 -100622438 + AT_rich Low_complexity Low_complexity 1 25 0 7 1034 223 297 201 7 chr3 58977462 58977601 -100622182 + MIR SINE MIR 30 195 -67 7 1034 486 265 30 0 chr3 58978482 58978614 -100621169 + ORR1D2 LTR MaLR 2 137 -233 7 1034 329 212 0 0 chr3 58978613 58978679 -100621104 + ORR1D2 LTR MaLR 304 369 -1 7 1034 263 311 67 10 chr3 58978955 58979059 -100620724 + Tigger6b DNA MER2_type 1164 1273 -324 7 1034 306 0 0 0 chr3 58979728 58979762 -100620021 + (TC)n Simple_repeat Simple_repeat 1 34 0 7 1034 270 0 0 0 chr3 58979762 58979791 -100619992 + (CA)n Simple_repeat Simple_repeat 1 30 0 7 1034 462 36 0 0 chr3 58981494 58981550 -100618233 + (TG)n Simple_repeat Simple_repeat 1 56 0 7 1034 249 328 22 109 chr3 58981606 58981630 -100618153 - B4 SINE B4 -104 188 120 7 1034 288 247 11 138 chr3 58981630 58981724 -100618059 - B1F2 SINE Alu -67 82 1 7 1034 249 328 22 109 chr3 58981724 58981740 -100618043 - B4 SINE B4 -104 119 67 7 1034 718 255 7 0 chr3 58981859 58982004 -100617779 + RSINE1 SINE B4 3 148 -17 7 1035 412 266 96 20 chr3 58984101 58984247 -100615536 - B3A SINE B2 -39 159 3 7 1035 195 42 0 0 chr3 58986521 58986545 -100613238 + (CAT)n Simple_repeat Simple_repeat 2 25 0 7 1035 304 111 0 113 chr3 58987473 58987544 -100612239 + HAL1-3A_ME LINE L1 1965 2027 -831 7 1035 214 265 65 84 chr3 58988672 58988779 -100611004 + MIRm SINE MIR 85 189 -87 7 1035 26 0 0 0 chr3 58988947 58988973 -100610810 + AT_rich Low_complexity Low_complexity 1 26 0 7 1035 713 200 262 12 chr3 58988973 58989145 -100610638 - B3 SINE B2 0 216 2 7 1035 238 263 26 13 chr3 58991794 58991871 -100607912 - MIRb SINE MIR -141 127 50 7 1035 207 0 0 0 chr3 58994134 58994157 -100605626 + (GGGAA)n Simple_repeat Simple_repeat 4 26 0 7 1035 446 0 19 0 chr3 58996329 58996383 -100603400 + (TC)n Simple_repeat Simple_repeat 2 56 0 7 1035 272 70 23 0 chr3 58998733 58998776 -100601007 + (CAAA)n Simple_repeat Simple_repeat 2 45 0 7 1035 417 123 0 0 chr3 58999329 58999394 -100600389 + (CATA)n Simple_repeat Simple_repeat 2 66 0 7 1035 557 239 34 0 chr3 58999395 58999512 -100600271 + B1_Mur1 SINE Alu 29 149 0 7 1035 291 317 154 0 chr3 58999569 58999692 -100600091 - B1F2 SINE Alu -7 142 1 7 1035 375 305 55 37 chr3 58999889 58999998 -100599785 + RSINE1 SINE B4 33 143 -22 7 1035 322 188 0 68 chr3 59000929 59001003 -100598780 + HAL1-3A_ME LINE L1 1950 2018 -840 1 1035 495 228 0 0 chr3 59001023 59001203 -100598580 + (CA)n Simple_repeat Simple_repeat 1 180 0 2 1035 297 0 0 0 chr3 59001942 59001975 -100597808 + (TG)n Simple_repeat Simple_repeat 2 34 0 3 1035 532 289 0 30 chr3 59002051 59002183 -100597600 - RSINE1 SINE B4 -36 129 2 4 1035 377 275 220 21 chr3 59002329 59002470 -100597313 - B4 SINE B4 -122 170 2 5 1035 3882 141 101 8 chr3 59002697 59003412 -100596371 - Lx LINE L1 0 6654 5874 6 1035 720 258 7 0 chr3 59003430 59003585 -100596198 - RSINE1 SINE B4 -6 159 4 7 1035 252 0 0 0 chr3 59003730 59003758 -100596025 + (TG)n Simple_repeat Simple_repeat 2 29 0 8 1035 423 256 16 41 chr3 59004392 59004514 -100595269 - PB1D7 SINE Alu -1 119 1 9 1035 582 75 0 0 chr3 59007032 59007112 -100592671 + (CA)n Simple_repeat Simple_repeat 2 81 0 1 1035 298 281 262 0 chr3 59008434 59008655 -100591128 + B4A SINE B4 2 280 -12 1 1035 372 118 0 0 chr3 59008680 59008748 -100591035 + (CA)n Simple_repeat Simple_repeat 2 69 0 1 1035 240 336 106 8 chr3 59009024 59009147 -100590636 + MIR SINE MIR 18 152 -110 1 1035 358 169 72 94 chr3 59009498 59009623 -100590160 - B1F SINE Alu -27 122 3 1 1035 191 267 33 16 chr3 59009743 59009804 -100589979 + MER5A DNA MER1_type 114 175 -14 1 1035 988 55 55 0 chr3 59010871 59010999 -100588784 + B1_Mus1 SINE Alu 1 135 -13 1 1035 297 0 0 0 chr3 59011003 59011036 -100588747 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 1 1035 256 318 45 0 chr3 59011531 59011597 -100588186 - tRNA-Ala-GCY_ tRNA tRNA -6 69 1 1 1035 473 225 26 43 chr3 59011689 59011805 -100587978 + PB1D9 SINE Alu 2 115 -5 1 1035 206 193 0 34 chr3 59014453 59014512 -100585271 + T-rich Low_complexity Low_complexity 5 61 0 2 1035 553 242 74 23 chr3 59015021 59015184 -100584599 - B3A SINE B2 -5 193 1 2 1035 246 81 0 0 chr3 59016525 59016562 -100583221 + (TG)n Simple_repeat Simple_repeat 2 38 0 2 1035 227 277 107 12 chr3 59016573 59016657 -100583126 - RSINE1 SINE B4 -62 103 12 2 1035 313 20 61 0 chr3 59017072 59017121 -100582662 + (CAAA)n Simple_repeat Simple_repeat 2 53 0 2 1035 484 349 95 80 chr3 59018073 59018335 -100581448 + B4 SINE B4 9 274 -18 2 1035 419 78 16 0 chr3 59018374 59018438 -100581345 + (CA)n Simple_repeat Simple_repeat 2 66 0 2 1035 1934 244 40 12 chr3 59019358 59019859 -100579924 - Lx5 LINE L1 -5 7045 6531 2 1035 22 0 0 0 chr3 59020152 59020174 -100579609 + AT_rich Low_complexity Low_complexity 1 22 0 2 1035 207 88 0 0 chr3 59024335 59024369 -100575414 + (TTGG)n Simple_repeat Simple_repeat 2 35 0 2 1035 210 313 154 15 chr3 59025103 59025239 -100574544 + MER5A DNA MER1_type 34 188 -1 3 1035 918 177 193 0 chr3 59025481 59025662 -100574121 - B3 SINE B2 0 216 1 3 1035 414 57 0 0 chr3 59026156 59026209 -100573574 + (TG)n Simple_repeat Simple_repeat 2 54 0 3 1035 25 31 0 0 chr3 59027306 59027338 -100572445 + AT_rich Low_complexity Low_complexity 1 32 0 3 1035 269 364 0 0 chr3 59027395 59027472 -100572311 - ID4 SINE ID -6 77 1 3 1035 22 0 0 0 chr3 59027687 59027709 -100572074 + AT_rich Low_complexity Low_complexity 1 22 0 3 1035 234 0 0 0 chr3 59027778 59027804 -100571979 + (CA)n Simple_repeat Simple_repeat 2 27 0 3 1035 21 0 0 0 chr3 59030449 59030470 -100569313 + AT_rich Low_complexity Low_complexity 1 21 0 3 1035 192 40 0 0 chr3 59032257 59032282 -100567501 + (TTG)n Simple_repeat Simple_repeat 2 26 0 3 1035 216 0 0 0 chr3 59033170 59033194 -100566589 + (TTCC)n Simple_repeat Simple_repeat 2 25 0 3 1035 351 0 0 0 chr3 59033468 59033507 -100566276 + (CA)n Simple_repeat Simple_repeat 2 40 0 4 1035 594 304 70 0 chr3 59033685 59033886 -100565897 - ID_B1 SINE B4 0 224 10 4 1035 697 251 98 105 chr3 59034593 59034878 -100564905 - B4 SINE B4 -8 284 2 4 1035 303 309 0 0 chr3 59035308 59035376 -100564407 + RSINE1 SINE B4 5 72 -93 4 1035 818 268 4 95 chr3 59035965 59036208 -100563575 + B4 SINE B4 68 288 -4 4 1035 324 70 0 0 chr3 59036213 59036256 -100563527 + (CA)n Simple_repeat Simple_repeat 2 44 0 4 1035 992 212 34 5 chr3 59037424 59037628 -100562155 - B3 SINE B2 -6 210 1 4 1035 350 310 72 25 chr3 59037666 59037944 -100561839 - L1MA6 LINE L1 -35 6265 5975 4 1035 1214 47 0 7 chr3 59037991 59038140 -100561643 + B1_Mus1 SINE Alu 1 148 0 4 1035 229 45 21 83 chr3 59038144 59038192 -100561591 + (CAAAA)n Simple_repeat Simple_repeat 2 46 0 4 1035 234 217 0 0 chr3 59038592 59038661 -100561122 + A-rich Low_complexity Low_complexity 1 69 0 5 1035 338 0 24 0 chr3 59039153 59039195 -100560588 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 5 1035 26 74 0 0 chr3 59040304 59040358 -100559425 + AT_rich Low_complexity Low_complexity 1 54 0 5 1035 189 94 0 0 chr3 59040461 59040493 -100559290 + (TTTTG)n Simple_repeat Simple_repeat 4 35 0 5 1035 555 296 173 5 chr3 59040493 59040690 -100559093 - MTD LTR MaLR -72 347 118 5 1035 2818 258 55 102 chr3 59041088 59041488 -100558295 - Lx5 LINE L1 -39 7011 6612 5 1035 3968 16 0 0 chr3 59041488 59041939 -100557844 - L1Md_A LINE L1 0 6582 6132 5 1035 2818 258 55 102 chr3 59041939 59042730 -100557053 - Lx5 LINE L1 -439 6611 5876 5 1035 3216 178 40 24 chr3 59042725 59043022 -100556761 + L1_Mur3 LINE L1 5146 5440 -440 5 1035 270 0 0 0 chr3 59043022 59043052 -100556731 + (CAAA)n Simple_repeat Simple_repeat 3 32 0 5 1035 3216 178 40 24 chr3 59043052 59043452 -100556331 + L1_Mur3 LINE L1 5441 5853 -27 5 1035 201 162 0 0 chr3 59044651 59044688 -100555095 + A-rich Low_complexity Low_complexity 1 37 0 5 1035 26 30 0 0 chr3 59044993 59045026 -100554757 + AT_rich Low_complexity Low_complexity 1 33 0 6 1035 322 345 119 26 chr3 59045926 59046152 -100553631 + L2 LINE L2 2562 2808 -611 6 1035 522 0 0 0 chr3 59046468 59046526 -100553257 + (TC)n Simple_repeat Simple_repeat 1 58 0 6 1035 240 266 9 105 chr3 59046527 59046632 -100553151 - RMER12 LTR ERVK -507 815 721 6 1035 232 316 42 50 chr3 59047909 59048029 -100551754 + MIRm SINE MIR 25 143 -133 6 1035 207 209 0 0 chr3 59048609 59048652 -100551131 + T-rich Low_complexity Low_complexity 1 43 0 6 1035 21 36 0 0 chr3 59049450 59049478 -100550305 + AT_rich Low_complexity Low_complexity 1 28 0 6 1035 538 119 270 0 chr3 59049478 59049604 -100550179 - Lx3A LINE L1 -16 6965 6806 6 1035 291 242 0 0 chr3 59050256 59050355 -100549428 + (TAGA)n Simple_repeat Simple_repeat 3 101 0 6 1035 3288 63 30 0 chr3 59052741 59053167 -100546616 - L1_Mus1 LINE L1 0 6567 6129 6 1035 279 272 37 0 chr3 59054059 59054140 -100545643 + Lx7 LINE L1 7217 7300 -396 7 1035 225 244 22 22 chr3 59054143 59054235 -100545548 + T-rich Low_complexity Low_complexity 1 92 0 7 1035 362 243 0 0 chr3 59055172 59055246 -100544537 - ID4_ SINE ID -9 74 1 7 1035 180 97 0 0 chr3 59055326 59055357 -100544426 + (T)n Simple_repeat Simple_repeat 1 31 0 7 1035 261 0 0 0 chr3 59055403 59055432 -100544351 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 7 1035 398 293 94 62 chr3 59056833 59057142 -100542641 - L1MC4 LINE L1 -656 7386 7068 7 1035 741 310 39 25 chr3 59057380 59057661 -100542122 + B4A SINE B4 2 286 -6 7 1035 255 247 0 0 chr3 59057685 59057758 -100542025 + (CATG)n Simple_repeat Simple_repeat 3 75 0 7 1035 355 378 66 8 chr3 59057771 59058014 -100541769 - L1MC4 LINE L1 -1119 6763 6507 7 1035 204 98 73 0 chr3 59058241 59058282 -100541501 + T-rich Low_complexity Low_complexity 1 44 0 7 1035 228 73 35 35 chr3 59058718 59058775 -100541008 + (CAAAAA)n Simple_repeat Simple_repeat 4 60 0 7 1035 682 242 119 35 chr3 59059352 59059553 -100540230 + ID_B1 SINE B4 4 221 -3 8 1035 3091 26 0 0 chr3 59060023 59060364 -100539419 - L1Md_A LINE L1 -1 6581 6241 8 1035 1345 20 0 0 chr3 59060365 59060518 -100539265 + L1_Mm LINE L1 3929 4081 -1802 8 1035 324 0 0 0 chr3 59064411 59064447 -100535336 + (TG)n Simple_repeat Simple_repeat 2 37 0 8 1035 233 301 73 53 chr3 59065403 59065554 -100534229 + Charlie13b DNA Charlie 176 329 -183 8 1035 195 42 0 0 chr3 59065916 59065940 -100533843 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 8 1035 23 33 0 0 chr3 59067442 59067472 -100532311 + AT_rich Low_complexity Low_complexity 1 30 0 8 1035 410 202 23 23 chr3 59069443 59069529 -100530254 - B1_Mm SINE Alu -18 129 44 8 1035 302 229 196 59 chr3 59071372 59071474 -100528309 + PB1 SINE Alu 1 116 -11 8 1035 273 330 11 0 chr3 59072284 59072372 -100527411 + L2a LINE L2 3291 3379 -47 8 1035 364 174 85 18 chr3 59072394 59072478 -100527305 + PB1 SINE Alu 10 97 -20 9 1035 393 248 47 19 chr3 59072675 59072782 -100527001 - RLTR19-int LTR ERVK -1904 4233 4124 9 1035 279 253 81 0 chr3 59072831 59072918 -100526865 - RLTR19-int LTR ERVK -2007 4130 4037 9 1035 939 256 100 97 chr3 59073019 59073365 -100526418 - RLTR19-int LTR ERVK -2168 3969 3707 9 1035 3595 35 2 0 chr3 59073365 59073760 -100526023 - MTA_Mm LTR MaLR 0 396 1 9 1035 939 255 112 109 chr3 59073760 59073778 -100526005 - RLTR19-int LTR ERVK -2431 3706 3691 9 1035 459 0 0 0 chr3 59073778 59073829 -100525954 + (TAGA)n Simple_repeat Simple_repeat 4 54 0 9 1035 939 255 112 109 chr3 59073829 59074342 -100525441 - RLTR19-int LTR ERVK -2447 3690 3162 9 1035 579 249 79 138 chr3 59074627 59075046 -100524737 - RLTR19-int LTR ERVK -3115 3022 2629 9 1035 1005 90 67 7 chr3 59075086 59075214 -100524569 + B1_Mus1 SINE Alu 1 137 -11 9 1035 207 0 0 0 chr3 59075214 59075237 -100524546 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 9 1035 423 68 0 0 chr3 59075659 59075718 -100524065 + (GGAA)n Simple_repeat Simple_repeat 2 60 0 9 1035 24 32 0 0 chr3 59076006 59076037 -100523746 + AT_rich Low_complexity Low_complexity 1 31 0 9 1035 327 258 16 62 chr3 59076229 59076357 -100523426 - Lx9 LINE L1 -208 7436 7315 9 1035 7893 53 19 5 chr3 59076358 59077772 -100522011 - L1Md_F2 LINE L1 0 6582 5158 9 1035 983 237 219 38 chr3 59077765 59078212 -100521571 - Lx9 LINE L1 -309 7335 6808 9 1035 556 279 166 51 chr3 59078302 59078557 -100521226 - Lx9 LINE L1 -998 6646 6346 9 1035 2415 138 18 18 chr3 59078557 59078955 -100520828 - RMER10B LTR ERVL 0 398 1 1 1035 272 48 24 0 chr3 59078963 59079005 -100520778 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 1035 556 279 166 51 chr3 59079005 59079095 -100520688 - Lx9 LINE L1 -1303 6341 6251 9 1035 408 40 0 0 chr3 59079871 59079921 -100519862 + (CAG)n Simple_repeat Simple_repeat 3 52 0 1 1035 216 250 14 72 chr3 59080381 59080450 -100519333 - B4 SINE B4 -211 81 17 1 1035 731 218 13 33 chr3 59080515 59080667 -100519116 - B1_Mur1 SINE Alu 0 149 1 1 1035 210 198 156 44 chr3 59080903 59080993 -100518790 - MIRb SINE MIR -1 267 168 1 1035 1140 128 194 0 chr3 59081511 59081691 -100518092 - B3 SINE B2 0 216 2 1 1035 307 264 0 40 chr3 59082223 59082298 -100517485 - ID4 SINE ID -11 72 1 1 1035 1254 195 226 50 chr3 59082428 59082747 -100517036 - ORR1C1 LTR MaLR 0 378 4 1 1035 231 217 55 55 chr3 59083407 59083480 -100516303 + L1M2a1 LINE L1 373 445 -6671 1 1035 42237 7 0 1 chr3 59083795 59090803 -100508980 - L1Md_A LINE L1 0 6582 1 1 1035 629 209 22 15 chr3 59095044 59095180 -100504603 - Lx7 LINE L1 0 7696 7560 1 1035 422 199 76 8 chr3 59095182 59095314 -100504469 - Lx7 LINE L1 -193 7503 7363 1 1035 1160 112 84 6 chr3 59095326 59095505 -100504278 - B2_Mm1a SINE B2 0 193 1 1 1035 8002 93 5 1 chr3 59095514 59096640 -100503143 - L1_Mus4 LINE L1 0 6636 5506 1 1035 3924 151 2 2 chr3 59096633 59097271 -100502512 + L1_Mur2 LINE L1 4869 5506 -371 1 1035 284 270 111 11 chr3 59098478 59098568 -100501215 + PB1D10 SINE Alu 9 107 -10 1 1035 315 0 0 0 chr3 59098568 59098603 -100501180 + (CAAT)n Simple_repeat Simple_repeat 2 36 0 1 1035 218 291 270 25 chr3 59098697 59098901 -100500882 + MIRb SINE MIR 3 256 -12 1 1035 882 176 0 13 chr3 59098930 59099080 -100500703 + B1_Mur3 SINE Alu 2 149 0 1 1035 390 288 75 15 chr3 59100657 59100791 -100498992 - MER3 DNA MER1_type -2 207 66 1 1035 263 298 106 27 chr3 59101247 59101389 -100498394 + MIRm SINE MIR 47 199 -69 1 1035 337 266 13 0 chr3 59102463 59102550 -100497233 + ID4 SINE ID 2 89 -63 1 1035 225 0 0 0 chr3 59102554 59102579 -100497204 + (CAGG)n Simple_repeat Simple_repeat 2 26 0 1 1035 236 229 12 0 chr3 59103932 59104015 -100495768 + (TA)n Simple_repeat Simple_repeat 2 85 0 1 1035 184 314 59 0 chr3 59104333 59104384 -100495399 - L2c LINE L2 -196 3191 3138 1 1035 335 278 0 0 chr3 59104745 59104835 -100494948 + ID4 SINE ID 2 91 -61 1 1035 9401 21 0 0 chr3 59105644 59106708 -100493075 + L1Md_T LINE L1 4523 5586 -297 1 1035 9537 7 0 0 chr3 59106708 59107704 -100492079 + L1Md_T LINE L1 5587 6582 0 1 1035 369 287 28 0 chr3 59108476 59108584 -100491199 - L1MC4 LINE L1 -13 8029 7919 1 1035 244 318 95 0 chr3 59109140 59109266 -100490517 - L1MC4 LINE L1 -684 7358 7221 1 1035 474 261 62 47 chr3 59109456 59109649 -100490134 - B3A SINE B2 -1 197 2 1 1035 932 132 19 137 chr3 59109812 59110023 -100489760 + B2_Mm2 SINE B2 1 186 -9 1 1035 428 58 0 28 chr3 59110027 59110098 -100489685 + L1_Mus3 LINE L1 6569 6637 -1 1 1035 254 284 0 39 chr3 59110126 59110203 -100489580 + ID4 SINE ID 5 78 -5 1 1035 633 267 18 18 chr3 59110870 59111038 -100488745 + B4A SINE B4 106 273 -19 1 1035 1222 209 170 25 chr3 59111126 59111449 -100488334 - ORR1D1 LTR MaLR 0 374 5 1 1035 24 32 0 0 chr3 59111936 59111967 -100487816 + AT_rich Low_complexity Low_complexity 1 31 0 1 1035 704 91 0 9 chr3 59112259 59112370 -100487413 + (TCTA)n Simple_repeat Simple_repeat 2 111 0 1 1035 3134 36 5 5 chr3 59112370 59112761 -100487022 - MTA_Mm LTR MaLR -5 391 1 1 1035 575 230 71 0 chr3 59112829 59112955 -100486828 - B1_Mur2 SINE Alu -12 137 3 1 1036 467 323 121 0 chr3 59113730 59113962 -100485821 - MLT1C LTR MaLR -64 403 144 1 1036 308 250 34 59 chr3 59115554 59115673 -100484110 - MER53 DNA hAT -76 117 2 1 1036 802 167 17 0 chr3 59117095 59117269 -100482514 + (CATA)n Simple_repeat Simple_repeat 3 179 0 1 1036 282 291 0 12 chr3 59117444 59117524 -100482259 - ID2 SINE ID -3 80 2 1 1036 708 265 77 33 chr3 59124340 59124613 -100475170 + B4A SINE B4 1 285 -7 1 1036 319 167 0 49 chr3 59124854 59124936 -100474847 + CT-rich Low_complexity Low_complexity 3 80 0 1 1036 311 244 64 43 chr3 59125771 59125865 -100473918 - MER5A DNA MER1_type -8 181 86 1 1036 1072 288 91 13 chr3 59126110 59126483 -100473300 + MTD LTR MaLR 18 419 0 1 1036 308 293 89 61 chr3 59126483 59126973 -100472810 + L1M2 LINE L1 2426 2919 -3224 1 1036 368 264 186 36 chr3 59126977 59127256 -100472527 + L1MD LINE L1 2941 3261 -2885 1 1036 401 272 29 0 chr3 59127304 59127407 -100472376 + MTE2b LTR MaLR 5 110 -269 1 1036 890 304 123 13 chr3 59127403 59127826 -100471957 + MT2A LTR ERVL 57 563 0 1 1036 232 303 108 18 chr3 59127826 59128048 -100471735 + L1M2 LINE L1 3322 3563 -2580 1 1036 856 283 80 12 chr3 59128106 59128517 -100471266 + L1M2 LINE L1 3674 4112 -2031 1 1036 349 261 9 0 chr3 59128543 59128654 -100471129 + L1M2 LINE L1 4579 4690 -1453 1 1036 531 0 0 0 chr3 59128656 59128715 -100471068 + (TG)n Simple_repeat Simple_repeat 1 59 0 1 1036 23 78 0 0 chr3 59128955 59129006 -100470777 + AT_rich Low_complexity Low_complexity 1 51 0 1 1036 328 192 48 14 chr3 59130611 59130798 -100468985 - Lx9 LINE L1 -32 7612 7380 1 1036 262 255 0 0 chr3 59130819 59130866 -100468917 - PB1D7 SINE Alu -8 112 66 1 1036 504 300 24 30 chr3 59130957 59131122 -100468661 - RSINE1 SINE B4 0 165 2 1 1036 881 264 14 0 chr3 59131245 59131457 -100468326 + B3 SINE B2 2 216 0 1 1036 432 0 0 0 chr3 59131527 59131575 -100468208 + (CA)n Simple_repeat Simple_repeat 2 49 0 1 1036 210 359 21 11 chr3 59136179 59136272 -100463511 + L2a LINE L2 3328 3421 -5 1 1036 1529 270 68 43 chr3 59136872 59137383 -100462400 + Tigger7 DNA MER2_type 45 568 -1923 1 1036 336 340 60 0 chr3 59137379 59137479 -100462304 + Tigger7 DNA MER2_type 2385 2490 -1 1 1036 22 0 0 0 chr3 59137520 59137542 -100462241 + AT_rich Low_complexity Low_complexity 1 22 0 1 1036 254 365 43 0 chr3 59138253 59138368 -100461415 + Kanga1c DNA Tc2 225 344 -385 1 1036 189 0 0 0 chr3 59138656 59138677 -100461106 + (TG)n Simple_repeat Simple_repeat 2 22 0 1 1036 4773 34 0 0 chr3 59139533 59140092 -100459691 + L1Md_F3 LINE L1 6012 6570 -14 1 1036 240 111 0 0 chr3 59141110 59141146 -100458637 + (ATG)n Simple_repeat Simple_repeat 3 38 0 1 1036 509 273 94 12 chr3 59141689 59141939 -100457844 - L1MB7 LINE L1 -188 5990 5712 1 1036 207 0 0 0 chr3 59142021 59142044 -100457739 + (CTAAT)n Simple_repeat Simple_repeat 5 27 0 1 1036 864 159 11 6 chr3 59142962 59143139 -100456644 + CT-rich Low_complexity Low_complexity 3 180 0 1 1036 797 300 57 4 chr3 59143171 59143415 -100456368 - B4A SINE B4 -12 280 24 1 1036 187 311 139 53 chr3 59143830 59143977 -100455806 + MIRb SINE MIR 25 191 -77 1 1036 2286 173 34 19 chr3 59143977 59144390 -100455393 - MTC LTR MaLR -2 419 1 1 1036 187 311 139 53 chr3 59144390 59144429 -100455354 + MIRb SINE MIR 192 227 -41 1 1036 207 0 0 0 chr3 59145406 59145429 -100454354 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1 1036 323 266 58 32 chr3 59145642 59145790 -100453993 - Lx7 LINE L1 -442 7254 7117 1 1036 606 242 24 19 chr3 59146012 59146284 -100453499 - L1MA4A LINE L1 -364 5936 5668 1 1036 194 0 39 0 chr3 59146320 59146346 -100453437 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 1036 343 280 63 24 chr3 59146423 59146601 -100453182 + L1_Mm LINE L1 5344 5562 -735 1 1036 35 24 0 0 chr3 59146802 59146844 -100452939 + AT_rich Low_complexity Low_complexity 1 42 0 1 1036 21 0 0 0 chr3 59146883 59146904 -100452879 + AT_rich Low_complexity Low_complexity 1 21 0 1 1036 207 0 0 0 chr3 59147848 59147871 -100451912 + (CTG)n Simple_repeat Simple_repeat 1 23 0 1 1036 558 0 0 0 chr3 59148646 59148708 -100451075 + (TG)n Simple_repeat Simple_repeat 2 63 0 1 1036 2841 6 0 0 chr3 59148973 59149291 -100450492 - L1Md_A LINE L1 0 6582 6265 1 1036 180 274 38 76 chr3 59150282 59150361 -100449422 - MIRb SINE MIR -156 112 37 1 1036 189 286 92 85 chr3 59151318 59151448 -100448335 - MIRm SINE MIR -140 136 6 1 1036 7187 145 10 0 chr3 59151603 59152881 -100446902 - Lx6 LINE L1 -1547 5913 4628 1 1036 1678 123 21 21 chr3 59152881 59153164 -100446619 + Lx LINE L1 6372 6654 0 1 1036 282 150 233 0 chr3 59153425 59153485 -100446298 + MT2A LTR ERVL 10 83 -450 1 1036 392 274 0 21 chr3 59153598 59153695 -100446088 + RMER15 LTR ERVL 286 380 -195 1 1036 463 159 18 0 chr3 59153695 59153808 -100445975 + (TG)n Simple_repeat Simple_repeat 2 116 0 1 1036 895 99 24 12 chr3 59155443 59155607 -100444176 + (TCCCC)n Simple_repeat Simple_repeat 2 167 0 1 1036 519 306 132 32 chr3 59155607 59155786 -100443997 - ID_B1 SINE B4 -10 214 16 1 1036 1248 272 91 10 chr3 59156026 59156412 -100443371 + MTD LTR MaLR 1 417 -2 1 1036 25 0 0 0 chr3 59157153 59157178 -100442605 + AT_rich Low_complexity Low_complexity 1 25 0 1 1036 2756 126 50 72 chr3 59157178 59157702 -100442081 - Lx4A LINE L1 0 7058 6547 1 1036 238 333 13 0 chr3 59157702 59157777 -100442006 - MER58B DNA MER1_type -7 334 259 1 1036 791 72 0 0 chr3 59157778 59157889 -100441894 + L1_Mus1 LINE L1 6457 6567 0 1 1036 760 228 31 11 chr3 59158903 59159094 -100440689 - RMER5 LTR ERV1 -11 523 329 1 1036 5455 103 11 10 chr3 59159579 59160384 -100439399 - RLTR13D1 LTR ERVK 0 806 1 1 1036 778 63 0 8 chr3 59160594 59160705 -100439078 + L1_Mus3 LINE L1 6207 6302 -336 1 1036 1062 293 39 57 chr3 59160706 59161623 -100438160 - L1_Mur3 LINE L1 -7042 670 1 1 1036 734 136 8 53 chr3 59161623 59161755 -100438028 - RMER15 LTR ERVL -423 152 27 1 1036 825 251 143 4 chr3 59161904 59162156 -100437627 + ORR1D1 LTR MaLR 86 372 -2 1 1036 497 293 120 25 chr3 59162164 59162654 -100437129 + L1MA6 LINE L1 5570 6109 -203 2 1036 2538 45 33 0 chr3 59163179 59163516 -100436267 - L1Md_F3 LINE L1 -196 6388 6041 2 1036 1719 32 0 9 chr3 59163516 59163734 -100436049 + L1Md_F3 LINE L1 6355 6570 -14 2 1036 229 218 154 0 chr3 59164572 59164650 -100435133 - Lx8 LINE L1 -1 7472 7383 2 1036 25 0 0 0 chr3 59165500 59165525 -100434258 + AT_rich Low_complexity Low_complexity 1 25 0 2 1036 27 49 0 0 chr3 59165626 59165667 -100434116 + AT_rich Low_complexity Low_complexity 1 41 0 2 1036 22 0 0 0 chr3 59167152 59167174 -100432609 + AT_rich Low_complexity Low_complexity 1 22 0 2 1036 2178 284 141 50 chr3 59167768 59168871 -100430912 + Lx8 LINE L1 6270 7473 0 2 1036 4270 143 156 76 chr3 59170783 59171730 -100428053 + RLTR13D2 LTR ERVK 1 1023 0 2 1036 591 263 103 26 chr3 59171731 59171926 -100427857 - B3 SINE B2 -6 210 1 2 1036 252 261 23 159 chr3 59172232 59172364 -100427419 + MT2B LTR ERVL 160 273 -328 2 1036 712 198 0 23 chr3 59172255 59172384 -100427399 + B1_Mur1 SINE Alu 19 144 -5 2 1036 339 118 0 0 chr3 59172386 59172439 -100427344 - L1_Mm LINE L1 -547 5633 5552 2 1036 1852 108 50 22 chr3 59172428 59172751 -100427032 + Lx2 LINE L1 6408 6739 -258 2 1036 1282 214 0 16 chr3 59172753 59173009 -100426774 - ORR1B2-int LTR MaLR -1257 252 1 2 1036 1866 193 33 44 chr3 59173013 59173376 -100426407 - ORR1B2 LTR MaLR -8 359 1 2 1036 2340 190 98 26 chr3 59173377 59173999 -100425784 + Lx9 LINE L1 6977 7643 -1 2 1036 3471 176 7 2 chr3 59174139 59174730 -100425053 - Lx LINE L1 0 6654 6061 2 1036 2949 21 3 0 chr3 59174730 59175066 -100424717 + IAPLTR1a_Mm LTR ERVK 1 337 0 2 1036 53225 21 15 4 chr3 59175066 59181474 -100418309 + IAPEz-int LTR ERVK 8 6481 0 2 1036 2949 21 3 0 chr3 59181474 59181810 -100417973 + IAPLTR1a_Mm LTR ERVK 1 337 0 2 1036 18357 144 14 31 chr3 59181810 59185605 -100414178 - Lx LINE L1 -588 6066 2350 2 1036 725 258 34 34 chr3 59186706 59187003 -100412780 - L1_Mur3 LINE L1 -226 5654 5358 2 1036 1725 292 23 16 chr3 59187044 59187619 -100412164 + Lx8 LINE L1 6290 6868 -605 2 1036 563 88 11 0 chr3 59187771 59187862 -100411921 + (GGAA)n Simple_repeat Simple_repeat 3 94 0 2 1036 366 305 63 0 chr3 59187863 59187958 -100411825 + MTB_Mm LTR MaLR 180 280 -127 2 1036 288 53 0 0 chr3 59188024 59188062 -100411721 + (CAA)n Simple_repeat Simple_repeat 1 38 0 2 1036 330 194 0 0 chr3 59188242 59188309 -100411474 + T-rich Low_complexity Low_complexity 4 70 0 2 1036 207 182 0 0 chr3 59188309 59188342 -100411441 + polypyrimidine Low_complexity Low_complexity 3 35 0 2 1036 192 376 62 31 chr3 59188359 59188488 -100411295 - L3 LINE CR1 -1349 3140 3008 2 1036 369 0 0 0 chr3 59189505 59189546 -100410237 + (CA)n Simple_repeat Simple_repeat 1 41 0 2 1036 345 317 0 24 chr3 59189951 59190077 -100409706 + CT-rich Low_complexity Low_complexity 1 123 0 2 1036 417 286 138 31 chr3 59190084 59190214 -100409569 - ID_B1 SINE B4 0 224 81 2 1036 926 259 11 19 chr3 59190378 59190649 -100409134 + Lx5 LINE L1 6735 7003 -47 2 1036 26 0 0 0 chr3 59190655 59190681 -100409102 + AT_rich Low_complexity Low_complexity 1 26 0 2 1036 414 306 65 36 chr3 59190692 59190831 -100408952 + B3A SINE B2 7 149 -49 2 1036 279 0 0 0 chr3 59190851 59190882 -100408901 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 2 1036 412 322 100 8 chr3 59191025 59191266 -100408517 - L1ME3A LINE L1 -252 5921 5659 2 1036 235 268 28 0 chr3 59191478 59191549 -100408234 + MLT1D LTR MaLR 26 98 -407 2 1036 249 336 16 16 chr3 59192299 59192426 -100407357 + CT-rich Low_complexity Low_complexity 5 131 0 2 1036 2965 121 37 13 chr3 59192721 59192879 -100406904 - Lx3A LINE L1 -13 6968 6812 2 1036 2825 55 0 0 chr3 59192879 59193225 -100406558 + ORR1A1 LTR MaLR 1 346 0 2 1036 2965 121 37 13 chr3 59193225 59193528 -100406255 - Lx3A LINE L1 -170 6811 6496 2 1036 1239 67 56 0 chr3 59194683 59194862 -100404921 - L1Md_F2 LINE L1 0 6582 6394 2 1036 3281 236 17 9 chr3 59194899 59195708 -100404075 - Lx2B LINE L1 -15 6985 6170 2 1036 4112 156 99 18 chr3 59195736 59195879 -100403904 + RMER13A LTR ERVK 1 145 -715 2 1036 306 0 0 0 chr3 59195879 59195913 -100403870 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 2 1036 4112 156 99 18 chr3 59195913 59196546 -100403237 + RMER13A LTR ERVK 146 839 -21 2 1036 2439 163 24 0 chr3 59196546 59197000 -100402783 - Lx2B LINE L1 -854 6146 5682 2 1036 231 202 248 8 chr3 59197254 59197379 -100402404 - L1MA6 LINE L1 -27 6273 6119 2 1036 36257 45 3 3 chr3 59197807 59204712 -100395071 - L1Md_T LINE L1 0 7053 64 2 1036 1911 186 35 0 chr3 59204716 59205054 -100394729 - Lx5 LINE L1 -453 6597 6248 2 1036 278 183 14 27 chr3 59205059 59205132 -100394651 + Lx5 LINE L1 6117 6188 -862 2 1036 624 356 58 20 chr3 59205294 59205746 -100394037 + MLT1G3 LTR MaLR 13 467 -128 2 1036 200 188 0 59 chr3 59207011 59207062 -100392721 + GA-rich Low_complexity Low_complexity 5 52 0 2 1036 805 74 16 0 chr3 59207067 59207189 -100392594 + (GA)n Simple_repeat Simple_repeat 2 125 0 2 1036 1908 191 34 37 chr3 59207308 59207716 -100392067 + MTB_Mm LTR MaLR 1 407 0 2 1036 242 333 78 0 chr3 59208967 59209057 -100390726 + LTR88b LTR Gypsy? 741 837 0 2 1036 495 48 0 0 chr3 59209714 59209776 -100390007 + (TG)n Simple_repeat Simple_repeat 1 62 0 2 1036 2922 128 31 19 chr3 59210072 59210956 -100388827 + L1VL4 LINE L1 354 1250 -2309 2 1036 4940 48 31 0 chr3 59210933 59211578 -100388205 + L1Md_F2 LINE L1 5898 6562 -20 2 1036 285 229 19 38 chr3 59212202 59212361 -100387422 + (TTG)n Simple_repeat Simple_repeat 1 156 0 2 1036 638 184 80 14 chr3 59212400 59212538 -100387245 - B1_Mus1 SINE Alu 0 148 2 2 1036 180 0 0 0 chr3 59212963 59212983 -100386800 + (ATG)n Simple_repeat Simple_repeat 2 21 0 2 1036 233 324 78 32 chr3 59212988 59213205 -100386578 - Charlie1b DNA MER1_type -174 349 123 2 1036 14161 48 4 3 chr3 59213766 59216252 -100383531 - L1Md_F2 LINE L1 -27 6555 4065 2 1036 21 36 0 0 chr3 59216968 59216996 -100382787 + AT_rich Low_complexity Low_complexity 1 28 0 2 1036 278 255 99 13 chr3 59217150 59217301 -100382482 - Lx7 LINE L1 -19 7677 7514 2 1036 6037 240 63 14 chr3 59217327 59219444 -100380339 - Lx7 LINE L1 -282 7414 5179 2 1036 7531 139 21 20 chr3 59219433 59221830 -100377953 - L1Md_F2 LINE L1 -11 6571 4163 2 1036 10160 201 43 23 chr3 59221833 59224467 -100375316 - Lx6 LINE L1 -1290 6170 3477 2 1036 265 348 68 55 chr3 59224939 59225158 -100374625 - RMER12 LTR ERVK 0 1322 1101 2 1036 5388 88 26 10 chr3 59225416 59226212 -100373571 - RLTR22_Mus LTR ERVK -997 811 3 2 1036 421 337 56 36 chr3 59226425 59226625 -100373158 + B4A SINE B4 10 220 -72 2 1036 441 0 0 0 chr3 59226690 59226739 -100373044 + (CA)n Simple_repeat Simple_repeat 2 50 0 2 1036 1177 337 63 22 chr3 59227029 59227333 -100372450 - Lx8 LINE L1 -114 7359 7023 2 1036 339 0 0 56 chr3 59227333 59227387 -100372396 + (TTTTG)n Simple_repeat Simple_repeat 2 52 0 2 1036 1297 322 37 16 chr3 59227387 59227943 -100371840 - Lx8 LINE L1 -674 7022 6444 2 1036 236 275 24 59 chr3 59228092 59228177 -100371606 - RMER15 LTR ERVL -108 467 386 2 1036 406 312 58 0 chr3 59228177 59228315 -100371468 - Lx8 LINE L1 -233 7240 7095 2 1036 333 0 0 0 chr3 59229224 59229261 -100370522 + (CA)n Simple_repeat Simple_repeat 2 38 0 2 1036 543 31 0 0 chr3 59229261 59229325 -100370458 + (GA)n Simple_repeat Simple_repeat 2 66 0 2 1036 2789 138 8 0 chr3 59232804 59233246 -100366537 - Lx8 LINE L1 -1718 5755 5306 2 1036 1132 226 177 26 chr3 59233941 59234316 -100365467 + RMER17B LTR ERVK 449 957 -1 2 1036 848 195 24 0 chr3 59234317 59234481 -100365302 + ORR1B1 LTR MaLR 186 353 -41 2 1036 379 255 9 9 chr3 59234488 59234614 -100365169 + L1VL1 LINE L1 151 276 -6142 2 1036 2181 209 70 16 chr3 59234615 59235159 -100364624 + L1_Mus2 LINE L1 553 1125 -5491 2 1036 25 31 0 0 chr3 59235220 59235252 -100364531 + AT_rich Low_complexity Low_complexity 1 32 0 2 1036 295 79 12 62 chr3 59237350 59237431 -100362352 + A-rich Low_complexity Low_complexity 2 78 0 2 1036 29700 116 13 4 chr3 59237780 59238840 -100360943 + L1_Mus2 LINE L1 1071 2095 -3788 2 1036 1045 96 0 20 chr3 59238840 59238852 -100360931 - B1_Mus1 SINE Alu 0 148 139 2 1036 243 0 0 0 chr3 59238852 59238879 -100360904 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2 1036 1045 96 0 20 chr3 59238879 59239015 -100360768 - B1_Mus1 SINE Alu -10 138 3 2 1036 29700 117 12 5 chr3 59239015 59242610 -100357173 + L1_Mus2 LINE L1 2096 5732 -151 2 1036 2835 19 0 0 chr3 59242610 59242932 -100356851 - RLTRETN_Mm LTR ERVK 0 322 1 2 1036 29700 78 11 35 chr3 59242932 59243788 -100355995 + L1_Mus2 LINE L1 5731 6565 -1 2 1036 237 185 152 15 chr3 59244041 59244107 -100355676 + ID4_ SINE ID 3 77 -6 2 1037 1359 23 11 17 chr3 59244789 59244969 -100354814 + (TCTA)n Simple_repeat Simple_repeat 1 179 0 2 1037 1193 52 23 0 chr3 59244999 59245173 -100354610 + (TCTA)n Simple_repeat Simple_repeat 3 180 0 2 1037 185 0 40 0 chr3 59245192 59245217 -100354566 + (TCTA)n Simple_repeat Simple_repeat 1 26 0 2 1037 180 175 48 0 chr3 59245429 59245492 -100354291 + (TAGA)n Simple_repeat Simple_repeat 1 66 0 2 1037 193 0 61 30 chr3 59246031 59246064 -100353719 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 2 1037 216 0 0 0 chr3 59246068 59246092 -100353691 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 2 1037 280 232 10 104 chr3 59246104 59246139 -100353644 - BC1_Mm scRNA scRNA -52 100 72 2 1037 198 103 0 0 chr3 59246139 59246168 -100353615 + (TG)n Simple_repeat Simple_repeat 2 30 0 2 1037 289 234 11 95 chr3 59246168 59246234 -100353549 - ID4_ SINE ID -11 72 8 2 1037 315 294 81 48 chr3 59246259 59246445 -100353338 + Charlie8 DNA MER1_type 72 263 -2165 2 1037 267 379 0 0 chr3 59246671 59246758 -100353025 - B3 SINE B2 -128 88 2 2 1037 323 299 102 55 chr3 59247147 59247529 -100352254 - L1_Rod LINE L1 -3829 2018 1619 2 1037 564 300 97 16 chr3 59248796 59249030 -100350753 - Lx8 LINE L1 -719 6754 6521 2 1037 775 179 5 27 chr3 59249035 59249219 -100350564 + CT-rich Low_complexity Low_complexity 1 180 0 2 1037 1650 304 80 35 chr3 59249278 59250070 -100349713 - Lx8 LINE L1 -1022 6451 5625 2 1037 204 40 0 0 chr3 59250555 59250580 -100349203 + (TTTTC)n Simple_repeat Simple_repeat 2 26 0 2 1037 186 43 0 0 chr3 59250768 59250791 -100348992 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 2 1037 25 51 0 0 chr3 59251368 59251407 -100348376 + AT_rich Low_complexity Low_complexity 1 39 0 2 1037 525 16 0 0 chr3 59251710 59251772 -100348011 + (GGAGA)n Simple_repeat Simple_repeat 5 66 0 2 1037 956 194 27 15 chr3 59252222 59252484 -100347299 + Lx9 LINE L1 7380 7644 0 2 1037 220 207 24 24 chr3 59252578 59252613 -100347170 + T-rich Low_complexity Low_complexity 55 88 0 2 1037 1351 98 15 0 chr3 59252613 59252816 -100346967 - Lx2 LINE L1 -1 6996 6791 2 1037 220 207 24 24 chr3 59252816 59252864 -100346919 + T-rich Low_complexity Low_complexity 6 54 0 2 1037 207 0 0 0 chr3 59253250 59253273 -100346510 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 3 1037 1090 96 6 11 chr3 59255958 59256319 -100343464 + (CA)n Simple_repeat Simple_repeat 1 358 0 3 1037 767 276 5 5 chr3 59256889 59257086 -100342697 + B3 SINE B2 3 199 -17 3 1037 197 180 20 0 chr3 59257810 59257860 -100341923 + (TA)n Simple_repeat Simple_repeat 1 51 0 3 1037 847 215 48 61 chr3 59258522 59258750 -100341033 - URR1B DNA MER1_type 0 225 1 3 1037 382 270 16 0 chr3 59258830 59258956 -100340827 + L1M3 LINE L1 5124 5251 -889 3 1037 21 0 0 0 chr3 59259381 59259402 -100340381 + AT_rich Low_complexity Low_complexity 1 21 0 3 1037 623 280 82 5 chr3 59259409 59259617 -100340166 - Lx3C LINE L1 -42 6934 6711 3 1037 454 187 44 0 chr3 59259616 59259707 -100340076 + Lx4B LINE L1 6610 6704 -354 3 1037 325 316 140 0 chr3 59259843 59259957 -100339826 + B3A SINE B2 51 180 -18 3 1037 23 0 0 0 chr3 59259960 59259983 -100339800 + AT_rich Low_complexity Low_complexity 1 23 0 3 1037 528 265 60 20 chr3 59261265 59261415 -100338368 - Lx9 LINE L1 -951 6693 6538 3 1037 363 23 0 0 chr3 59261769 59261813 -100337970 + (CAAA)n Simple_repeat Simple_repeat 2 45 0 3 1037 363 89 0 0 chr3 59262857 59262913 -100336870 + (TC)n Simple_repeat Simple_repeat 1 56 0 3 1037 425 306 18 30 chr3 59262920 59263085 -100336698 - RSINE1 SINE B4 0 165 3 3 1037 717 12 0 0 chr3 59263099 59263181 -100336602 + (TA)n Simple_repeat Simple_repeat 1 82 0 3 1037 207 70 22 44 chr3 59263212 59263257 -100336526 + (TTTG)n Simple_repeat Simple_repeat 2 45 0 3 1037 461 305 128 33 chr3 59263363 59263692 -100336091 + Lx8 LINE L1 7108 7467 -6 3 1037 243 0 0 0 chr3 59263721 59263748 -100336035 + (CAGA)n Simple_repeat Simple_repeat 2 28 0 3 1037 602 93 18 18 chr3 59263749 59263859 -100335924 + (GGAA)n Simple_repeat Simple_repeat 4 113 0 3 1037 5029 60 0 0 chr3 59264691 59265326 -100334457 + L1Md_F2 LINE L1 4952 5586 -297 3 1037 8110 46 4 0 chr3 59265326 59266318 -100333465 + L1Md_F2 LINE L1 5587 6582 0 3 1037 27 29 0 0 chr3 59266359 59266393 -100333390 + AT_rich Low_complexity Low_complexity 1 34 0 3 1037 5250 226 35 56 chr3 59267821 59268636 -100331147 + Lx6 LINE L1 6060 6877 -583 3 1037 753 100 0 0 chr3 59268636 59268766 -100331017 + (GA)n Simple_repeat Simple_repeat 1 130 0 3 1037 5250 226 35 56 chr3 59268766 59269166 -100330617 + Lx6 LINE L1 6878 7248 -212 3 1037 23 33 0 0 chr3 59269233 59269263 -100330520 + AT_rich Low_complexity Low_complexity 1 30 0 3 1037 580 285 243 56 chr3 59269327 59269759 -100330024 + L1MC1 LINE L1 5698 6210 -123 3 1037 1806 309 78 60 chr3 59270347 59270935 -100328848 - Lx8 LINE L1 -4 7469 6856 3 1037 231 61 0 0 chr3 59270935 59270968 -100328815 + (CAAAA)n Simple_repeat Simple_repeat 2 34 0 3 1037 1806 309 78 60 chr3 59270968 59271326 -100328457 - Lx8 LINE L1 -618 6855 6506 3 1037 358 304 186 53 chr3 59271336 59271441 -100328342 - Lx8 LINE L1 -1162 6311 6175 3 1037 315 0 0 0 chr3 59271441 59271476 -100328307 + (TG)n Simple_repeat Simple_repeat 2 36 0 3 1037 358 304 186 53 chr3 59271476 59271859 -100327924 - Lx8 LINE L1 -1299 6174 5759 3 1037 499 73 0 0 chr3 59271859 59271927 -100327856 + B1_Mm SINE Alu 69 136 -11 3 1037 221 0 0 33 chr3 59271927 59271957 -100327826 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 3 1037 1056 294 7 58 chr3 59271982 59272406 -100327377 - Lx8 LINE L1 -158 5722 5353 3 1037 820 279 22 43 chr3 59272580 59272812 -100326971 + B4 SINE B4 56 282 -10 3 1037 351 0 0 0 chr3 59272829 59272868 -100326915 + (CA)n Simple_repeat Simple_repeat 2 40 0 3 1037 477 0 0 0 chr3 59272868 59272920 -100326863 + (GA)n Simple_repeat Simple_repeat 2 54 0 3 1037 219 36 0 0 chr3 59274334 59274362 -100325421 + (CA)n Simple_repeat Simple_repeat 2 29 0 3 1037 748 118 15 0 chr3 59274387 59274523 -100325260 + (GA)n Simple_repeat Simple_repeat 2 139 0 3 1037 447 73 0 0 chr3 59274686 59274754 -100325029 + (TG)n Simple_repeat Simple_repeat 1 68 0 3 1037 198 103 0 0 chr3 59274986 59275015 -100324768 + (TC)n Simple_repeat Simple_repeat 2 30 0 3 1037 475 308 53 122 chr3 59275090 59275418 -100324365 + RMER10A LTR ERVL 12 322 -120 3 1037 3203 46 10 0 chr3 59275418 59275810 -100323973 + MTA_Mm LTR MaLR 1 396 0 3 1037 475 308 53 122 chr3 59275810 59275917 -100323866 + RMER10A LTR ERVL 323 417 -25 3 1037 730 307 0 6 chr3 59275931 59276095 -100323688 - B3 SINE B2 -51 165 3 3 1037 29 0 0 0 chr3 59276252 59276281 -100323502 + AT_rich Low_complexity Low_complexity 1 29 0 3 1037 6929 73 50 1 chr3 59276302 59277232 -100322551 - L1_Mus2 LINE L1 -4 6562 5587 3 1037 291 20 38 38 chr3 59278322 59278375 -100321408 + (TTTTTG)n Simple_repeat Simple_repeat 2 54 0 3 1037 2111 103 89 98 chr3 59278375 59278825 -100320958 - RLTR47_MM LTR ERV1 -86 446 1 3 1037 512 111 14 0 chr3 59278847 59278919 -100320864 - tRNA-Val-GTG tRNA tRNA -3 73 1 3 1037 232 108 0 0 chr3 59279545 59279582 -100320201 + L1_Mur3 LINE L1 4930 4966 -914 3 1037 1588 251 90 44 chr3 59279573 59280474 -100319309 + Lx6 LINE L1 5810 6738 -320 3 1037 225 34 32 63 chr3 59280498 59280561 -100319222 + (TTTTG)n Simple_repeat Simple_repeat 2 62 0 3 1037 442 377 57 43 chr3 59281302 59281671 -100318112 - L1MC LINE L1 -2073 5809 5436 3 1037 3447 165 76 26 chr3 59281689 59282348 -100317435 - RLTR17 LTR ERVK 0 692 1 3 1037 330 87 0 0 chr3 59282815 59282861 -100316922 + (TA)n Simple_repeat Simple_repeat 1 46 0 3 1037 510 17 0 0 chr3 59282861 59282919 -100316864 + (CA)n Simple_repeat Simple_repeat 2 60 0 3 1037 2923 83 0 0 chr3 59284892 59285291 -100314492 - L1_Mus1 LINE L1 -42 5841 5443 3 1037 5463 69 28 1 chr3 59285293 59286021 -100313762 + L1_Mus1 LINE L1 5820 6566 -1 3 1037 393 22 0 0 chr3 59286707 59286753 -100313030 + (CAA)n Simple_repeat Simple_repeat 2 47 0 3 1037 414 0 0 0 chr3 59287332 59287378 -100312405 + (TCTA)n Simple_repeat Simple_repeat 3 48 0 3 1037 449 284 0 18 chr3 59288696 59288807 -100310976 - PB1 SINE Alu -2 125 17 3 1037 279 0 0 0 chr3 59289705 59289736 -100310047 + (CAT)n Simple_repeat Simple_repeat 2 32 0 3 1037 429 20 0 0 chr3 59289736 59289785 -100309998 + (TAG)n Simple_repeat Simple_repeat 2 51 0 3 1037 587 170 18 9 chr3 59289787 59289900 -100309883 - RLTR13C2 LTR ERVK 0 808 695 3 1037 1921 174 3 0 chr3 59289900 59290261 -100309522 - ETnERV3-int LTR ERVK -486 5322 4961 3 1037 2516 274 99 33 chr3 59290517 59291533 -100308250 - Lx6 LINE L1 -26 7434 6114 3 1037 648 0 0 0 chr3 59291533 59291605 -100308178 + (TC)n Simple_repeat Simple_repeat 2 73 0 3 1037 1749 298 74 115 chr3 59291605 59291855 -100307928 - Lx6 LINE L1 -937 6113 5832 3 1037 416 300 0 0 chr3 59292260 59292370 -100307413 - Lx9 LINE L1 -424 7220 7111 3 1037 977 269 66 25 chr3 59292369 59292765 -100307018 + Lx9 LINE L1 7233 7644 0 3 1037 33339 68 3 3 chr3 59292877 59299107 -100300676 - L1Md_F2 LINE L1 -1 6584 262 3 1037 1443 236 43 87 chr3 59299523 59300039 -100299744 + RLTR40 LTR ERVK 316 808 -9 3 1037 408 284 55 84 chr3 59300609 59300847 -100298936 + L1VL1 LINE L1 45 275 -6147 3 1037 368 250 53 53 chr3 59300898 59301050 -100298733 + L1Md_F LINE L1 567 718 -5801 3 1037 632 169 73 0 chr3 59301047 59301183 -100298600 + L1Md_F LINE L1 628 773 -5746 3 1037 25897 98 55 52 chr3 59301187 59307121 -100292662 + L1_Mus1 LINE L1 217 6567 0 3 1037 6069 160 20 5 chr3 59307134 59308321 -100291462 + Lx LINE L1 5447 6654 0 3 1037 381 319 50 14 chr3 59309035 59309175 -100290608 - B1_Mur2 SINE Alu -2 147 3 3 1037 246 393 0 26 chr3 59310429 59310544 -100289239 - PB1D10 SINE Alu -5 112 1 3 1037 888 251 51 46 chr3 59310975 59311326 -100288457 + RLTR15 LTR ERVK 1 353 -6 3 1037 894 313 21 21 chr3 59311765 59312046 -100287737 + B4A SINE B4 9 289 -3 3 1037 390 21 0 0 chr3 59312105 59312152 -100287631 + (CA)n Simple_repeat Simple_repeat 2 48 0 3 1037 371 271 70 47 chr3 59312908 59313036 -100286747 + MTEb LTR MaLR 249 379 0 3 1037 22 35 0 0 chr3 59313052 59313081 -100286702 + AT_rich Low_complexity Low_complexity 1 29 0 3 1037 230 260 0 0 chr3 59313220 59313270 -100286513 + PB1D10 SINE Alu 45 94 -23 3 1037 436 68 0 39 chr3 59315669 59315746 -100284037 + L1Md_F2 LINE L1 6508 6581 -1 3 1037 209 227 0 0 chr3 59315777 59315821 -100283962 + (TA)n Simple_repeat Simple_repeat 1 44 0 3 1037 39515 7 0 1 chr3 59316033 59323088 -100276695 - L1Md_A LINE L1 0 6582 1 3 1037 243 60 60 0 chr3 59325324 59325374 -100274409 + (TTTTTG)n Simple_repeat Simple_repeat 3 55 0 3 1037 961 88 0 0 chr3 59325378 59325515 -100274268 - L1_Mus1 LINE L1 0 6567 6431 3 1037 333 367 71 28 chr3 59326432 59326684 -100273099 + Lx8 LINE L1 7095 7357 -116 3 1037 1453 335 67 46 chr3 59326817 59327672 -100272111 + Lx8 LINE L1 6447 7319 -154 3 1037 301 355 74 74 chr3 59328029 59328312 -100271471 - B4A SINE B4 0 292 10 3 1037 1573 114 86 11 chr3 59328519 59328786 -100270997 + RLTR22_Mus LTR ERVK 1 287 -1521 3 1037 29765 91 14 14 chr3 59328810 59334961 -100264822 - L1Md_F2 LINE L1 -12 6570 430 3 1037 2333 75 6 0 chr3 59334973 59335292 -100264491 + RLTR22_Mus LTR ERVK 283 603 -1205 3 1037 408 322 35 61 chr3 59335369 59335597 -100264186 + RMER12 LTR ERVK 1101 1322 0 3 1037 2219 168 103 11 chr3 59336064 59336599 -100263184 + L1_Mur3 LINE L1 3471 4054 -1826 3 1037 30 0 0 0 chr3 59338463 59338493 -100261290 + AT_rich Low_complexity Low_complexity 1 30 0 3 1037 594 228 71 29 chr3 59338544 59338684 -100261099 + B1_Mus2 SINE Alu 2 147 0 3 1037 289 85 23 58 chr3 59338800 59338887 -100260896 + A-rich Low_complexity Low_complexity 2 85 0 3 1037 3777 19 0 0 chr3 59339518 59339951 -100259832 + L1Md_A LINE L1 6150 6582 0 3 1037 1257 301 57 27 chr3 59340807 59341474 -100258309 + RNERVK23-int LTR ERVK 2864 3550 -4667 3 1037 306 0 0 0 chr3 59341482 59341516 -100258267 + (TTTA)n Simple_repeat Simple_repeat 4 37 0 3 1037 1088 130 6 0 chr3 59341517 59341679 -100258104 - B2_Mm1t SINE B2 -30 163 1 3 1037 14924 123 14 15 chr3 59341685 59344246 -100255537 + ETnERV2-int LTR ERVK 1660 6223 -1183 3 1037 527 67 13 0 chr3 59344464 59344539 -100255244 + ETnERV2-int LTR ERVK 7331 7406 0 3 1037 2967 96 2 12 chr3 59344539 59344952 -100254831 + RLTR9E LTR ERVK 1 409 0 3 1037 607 359 65 52 chr3 59345299 59345746 -100254037 + MLT1E3 LTR MaLR 1 453 -171 3 1037 279 301 27 81 chr3 59345670 59345818 -100253965 + ID_B1 SINE B4 84 223 -1 3 1037 308 264 28 19 chr3 59345827 59345935 -100253848 + GA-rich Low_complexity Low_complexity 2 110 0 4 1037 333 218 0 34 chr3 59345954 59346101 -100253682 + GA-rich Low_complexity Low_complexity 2 143 0 4 1037 530 282 151 19 chr3 59346619 59347555 -100252228 - L1_Rod LINE L1 -1339 4804 3697 4 1037 19451 92 6 0 chr3 59347571 59350451 -100249332 + L1Md_F2 LINE L1 2691 5586 -297 4 1037 7302 82 0 13 chr3 59350451 59350713 -100249070 + L1Md_F2 LINE L1 5587 5848 -734 4 1037 3416 18 2 34 chr3 59350713 59351122 -100248661 + MTA_Mm LTR MaLR 1 396 0 4 1037 7302 82 0 13 chr3 59351122 59351866 -100247917 + L1Md_F2 LINE L1 5849 6580 -2 4 1037 1179 163 0 4 chr3 59351883 59352111 -100247672 + MusHAL1 LINE L1 912 1138 -1574 4 1037 15888 109 11 2 chr3 59352099 59354621 -100245162 + L1_Mm LINE L1 3070 5614 -269 4 1037 4789 127 40 6 chr3 59354615 59355023 -100244760 + L1_Mur2 LINE L1 1630 2052 -3825 4 1037 639 60 0 0 chr3 59355023 59355107 -100244676 + (CA)n Simple_repeat Simple_repeat 2 85 0 4 1037 4789 127 40 6 chr3 59355107 59355595 -100244188 + L1_Mur2 LINE L1 2053 2556 -3321 4 1037 357 250 0 48 chr3 59355595 59355679 -100244104 - RMER13A LTR ERVK -617 243 164 4 1037 707 226 57 0 chr3 59355669 59355828 -100243955 - RMER20A LTR ERVK -346 170 3 4 1037 1167 146 5 0 chr3 59355829 59356034 -100243749 + L1_Mur2 LINE L1 2563 2768 -3109 4 1037 31064 73 13 12 chr3 59356028 59359260 -100240523 - L1Md_F2 LINE L1 -346 6236 2967 4 1037 187 54 0 51 chr3 59359260 59359299 -100240484 + (ATTTG)n Simple_repeat Simple_repeat 4 40 0 4 1037 31064 80 15 14 chr3 59359299 59360304 -100239479 - L1Md_F2 LINE L1 -2917 2966 1983 4 1037 243 0 0 0 chr3 59360304 59360331 -100239452 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 4 1037 31064 102 42 9 chr3 59360331 59361888 -100237895 - L1Md_F2 LINE L1 -3901 1982 382 4 1037 1318 117 33 22 chr3 59361888 59362159 -100237624 - MusHAL1 LINE L1 -1792 920 647 4 1037 592 320 9 7 chr3 59362159 59362336 -100237447 + B3A SINE B2 34 206 -10 4 1037 1050 288 79 24 chr3 59362659 59363039 -100236744 - Lx6 LINE L1 -23 7437 7037 4 1037 1311 239 109 28 chr3 59363057 59363479 -100236304 - Lx6 LINE L1 -487 6973 6518 4 1037 1509 246 85 14 chr3 59363479 59363892 -100235891 - Lx6 LINE L1 -1187 6273 5832 4 1037 768 119 0 0 chr3 59364017 59364135 -100235648 + (TTTC)n Simple_repeat Simple_repeat 3 120 0 4 1037 928 82 82 0 chr3 59364136 59364270 -100235513 - B1_Mus1 SINE Alu -2 146 2 4 1037 401 284 9 9 chr3 59364565 59364675 -100235108 - Lx9 LINE L1 -424 7220 7111 4 1037 1021 268 91 16 chr3 59364674 59365057 -100234726 + Lx9 LINE L1 7233 7644 0 4 1037 1417 251 39 85 chr3 59365596 59366111 -100233672 + RLTR40 LTR ERVK 318 808 -9 4 1037 230 229 0 0 chr3 59366593 59366641 -100233142 - MLT1A LTR MaLR -313 61 14 4 1037 2522 111 5 16 chr3 59367380 59367765 -100232018 - RLTR9D LTR ERVK -22 381 1 4 1037 831 138 0 0 chr3 59368665 59368803 -100230980 + (TTTC)n Simple_repeat Simple_repeat 3 140 0 4 1037 1527 116 12 4 chr3 59368963 59369206 -100230577 - L1_Mus3 LINE L1 -6 6632 6388 4 1037 2707 31 2 201 chr3 59369211 59369694 -100230089 - RLTR10 LTR ERVK -3 387 1 4 1037 16031 20 13 0 chr3 59369696 59371615 -100228168 - RLTR10-int LTR ERVK -3 1984 41 4 1037 2446 37 2 207 chr3 59371625 59372103 -100227680 - RLTR10 LTR ERVK 0 390 11 4 1037 3046 36 2 89 chr3 59372120 59372547 -100227236 - RLTR10 LTR ERVK 0 390 1 4 1037 14307 29 8 2 chr3 59372549 59374307 -100225476 - RLTR10-int LTR ERVK -3 1984 216 4 1037 2401 25 129 0 chr3 59374312 59374630 -100225153 - IAPEz-int LTR ERVK -6115 366 8 4 1037 2915 27 0 3 chr3 59374630 59374968 -100224815 - IAPLTR1a_Mm LTR ERVK 0 337 1 4 1037 2112 93 0 3 chr3 59374968 59375269 -100224514 - L1_Mus3 LINE L1 -245 6393 6094 4 1037 1851 159 95 70 chr3 59375309 59375585 -100224198 - BGLII_Mus LTR ERVK 0 422 125 4 129 3363 114 2 0 chr3 59375585 59376066 -100223717 + L1_Mus2 LINE L1 6085 6566 0 4 1038 1851 159 95 70 chr3 59376066 59376201 -100223582 - BGLII_Mus LTR ERVK -298 124 1 4 1038 456 19 0 0 chr3 59376205 59376258 -100223525 + (TG)n Simple_repeat Simple_repeat 2 54 0 4 1038 21 36 0 0 chr3 59376268 59376296 -100223487 + AT_rich Low_complexity Low_complexity 1 28 0 4 1038 414 0 0 0 chr3 59376325 59376371 -100223412 + (TG)n Simple_repeat Simple_repeat 1 46 0 4 1038 373 359 62 0 chr3 59376373 59376518 -100223265 - RSINE1 SINE B4 -4 161 8 4 1038 297 0 0 0 chr3 59376907 59376940 -100222843 + (T)n Simple_repeat Simple_repeat 1 33 0 4 1038 555 189 0 0 chr3 59377155 59377282 -100222501 + GA-rich Low_complexity Low_complexity 2 128 0 4 1038 1035 279 116 21 chr3 59378337 59378674 -100221109 - MTE2b LTR MaLR -10 369 1 4 1038 1271 27 0 0 chr3 59378718 59378864 -100220919 - B1_Mm SINE Alu 0 147 2 4 1038 1888 251 41 12 chr3 59379557 59379785 -100219998 - Lx5 LINE L1 -8 7042 6813 4 1038 351 0 0 0 chr3 59379785 59379824 -100219959 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 4 1038 1888 251 41 12 chr3 59379824 59380112 -100219671 - Lx5 LINE L1 -238 6812 6511 4 1038 230 213 0 39 chr3 59381523 59381572 -100218211 + (CAAA)n Simple_repeat Simple_repeat 3 50 0 4 1038 203 79 0 26 chr3 59381572 59381611 -100218172 + (CAA)n Simple_repeat Simple_repeat 2 39 0 4 1038 230 213 0 39 chr3 59381611 59381639 -100218144 + (CAAA)n Simple_repeat Simple_repeat 3 29 0 4 1038 306 306 73 98 chr3 59381935 59382058 -100217725 + RMER20B LTR ERVK 6 125 -502 4 1038 234 62 0 0 chr3 59382307 59382339 -100217444 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 4 1038 249 273 70 10 chr3 59382362 59382462 -100217321 + RMER20B LTR ERVK 364 469 -47 4 1038 5372 121 53 15 chr3 59384011 59384884 -100214899 - RMER17A2 LTR ERVK 0 906 1 4 1038 339 78 0 0 chr3 59385129 59385180 -100214603 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 4 1038 1425 149 36 68 chr3 59385603 59385912 -100213871 - Lx2 LINE L1 -1 6996 6698 4 1038 226 315 76 15 chr3 59386123 59386255 -100213528 - L1MDa LINE L1 -6287 346 207 4 1038 621 299 157 37 chr3 59386411 59387004 -100212779 - L1MC4 LINE L1 -3861 2354 1691 4 1038 226 361 48 0 chr3 59387004 59387087 -100212696 + MLT2D LTR ERVL 408 494 -66 4 1038 1075 130 0 0 chr3 59387179 59387340 -100212443 - ORR1B1 LTR MaLR -23 371 211 4 1038 13199 131 13 57 chr3 59387388 59388925 -100210858 - L1_Mus2 LINE L1 -1 6565 5014 4 1038 3149 118 7 8 chr3 59388925 59389436 -100210347 - RLTR1C LTR ERV1 0 605 1 4 1038 13199 131 13 57 chr3 59389436 59391567 -100208216 - L1_Mus2 LINE L1 -1 5013 2860 4 1038 35476 43 2 4 chr3 59391565 59394343 -100205440 - L1Md_A LINE L1 -27 5856 3081 4 1038 3296 57 38 0 chr3 59394343 59394763 -100205020 - RLTR10C LTR ERVK 0 436 1 4 1038 35476 59 5 17 chr3 59394763 59397460 -100202323 - L1Md_A LINE L1 -2803 3080 422 4 1038 3083 137 8 58 chr3 59397461 59398514 -100201269 - L1Md_F LINE L1 -4167 1716 725 4 1038 275 308 31 0 chr3 59398522 59398652 -100201131 - L1Md_F LINE L1 -5813 803 670 4 1038 309 242 31 185 chr3 59398728 59398890 -100200893 - L1VL1 LINE L1 -6065 357 221 4 1038 1142 204 14 0 chr3 59398892 59399103 -100200680 - ORR1B1 LTR MaLR -169 225 12 4 1038 7690 51 1 2 chr3 59399103 59400791 -100198992 - L1Md_F2 LINE L1 0 6582 4898 4 1038 319 340 7 14 chr3 59400810 59400953 -100198830 - Lx7 LINE L1 -495 7201 7060 4 1038 1476 224 68 0 chr3 59400961 59401314 -100198469 + Lx7 LINE L1 6565 6941 -755 4 1038 3125 39 36 5 chr3 59401451 59401835 -100197948 - MTA_Mm LTR MaLR 0 396 1 4 1038 992 36 22 0 chr3 59401835 59401972 -100197811 - MTA_Mm-int LTR MaLR 0 1098 959 4 1038 5530 60 26 7 chr3 59401982 59402722 -100197061 + RLTR13C2 LTR ERVK 55 808 0 4 1038 280 140 0 57 chr3 59403638 59403691 -100196092 - MT2B LTR ERVL 0 584 535 4 1038 333 208 0 0 chr3 59403715 59403787 -100195996 + (TATG)n Simple_repeat Simple_repeat 1 72 0 4 1038 1058 220 119 91 chr3 59403789 59404242 -100195541 - MT2B LTR ERVL -63 538 1 4 1038 246 291 156 12 chr3 59404402 59404562 -100195221 - MT2A LTR ERVL -204 329 147 4 1038 380 285 86 14 chr3 59405907 59406046 -100193737 - B1F2 SINE Alu 0 149 1 4 1038 248 402 0 26 chr3 59407301 59407416 -100192367 - PB1D10 SINE Alu -5 112 1 4 1038 680 269 49 87 chr3 59407837 59408204 -100191579 + RLTR15 LTR ERVK 1 353 -6 4 1038 846 327 21 21 chr3 59408645 59408926 -100190857 + B4A SINE B4 9 289 -3 4 1038 216 97 0 0 chr3 59408985 59409016 -100190767 + (CA)n Simple_repeat Simple_repeat 2 32 0 4 1038 454 257 37 81 chr3 59409753 59409914 -100189869 + MTEa LTR MaLR 226 379 0 4 1038 21 36 0 0 chr3 59409930 59409958 -100189825 + AT_rich Low_complexity Low_complexity 1 28 0 4 1038 226 328 0 0 chr3 59410089 59410147 -100189636 + PB1D10 SINE Alu 37 94 -23 4 1038 4979 4 0 0 chr3 59411547 59412095 -100187688 - L1Md_A LINE L1 0 6582 6035 4 1038 22 56 0 0 chr3 59412691 59412727 -100187056 + AT_rich Low_complexity Low_complexity 1 36 0 4 1038 33430 72 1 15 chr3 59413087 59418608 -100181175 + L1Md_F LINE L1 304 5747 -136 4 1038 4561 50 0 4 chr3 59418608 59419169 -100180614 + L1Md_F2 LINE L1 6012 6570 -12 4 1038 2247 148 12 36 chr3 59420419 59420838 -100178945 + RLTR9E LTR ERVK 1 409 0 4 1038 287 127 0 16 chr3 59421884 59421948 -100177835 + (TC)n Simple_repeat Simple_repeat 2 64 0 4 1038 441 0 0 0 chr3 59421949 59421998 -100177785 + (TG)n Simple_repeat Simple_repeat 2 50 0 4 1038 9794 196 44 21 chr3 59423501 59426128 -100173655 + Lx6 LINE L1 3477 6172 -1288 4 1038 6202 215 49 9 chr3 59426129 59426152 -100173631 + Lx7 LINE L1 4163 4189 -1691 4 1038 567 0 0 0 chr3 59426152 59426215 -100173568 + (TA)n Simple_repeat Simple_repeat 2 64 0 4 1038 6408 229 48 14 chr3 59426215 59429325 -100170458 + Lx7 LINE L1 4190 7411 -285 4 1038 34035 55 1 4 chr3 59429325 59435662 -100164121 + L1Md_T LINE L1 1 5589 -297 4 1038 8398 36 0 2 chr3 59435662 59436660 -100163123 + L1Md_T LINE L1 5590 6585 0 4 1038 480 62 0 0 chr3 59436698 59436762 -100163021 + (TG)n Simple_repeat Simple_repeat 2 65 0 4 1038 288 248 102 14 chr3 59436785 59436932 -100162851 + Lx7 LINE L1 7537 7696 0 4 1038 631 197 71 21 chr3 59439057 59439197 -100160586 + B1_Mus1 SINE Alu 2 148 0 4 1038 226 64 85 0 chr3 59439237 59439284 -100160499 + (CAAAA)n Simple_repeat Simple_repeat 5 55 0 4 1038 213 238 9 38 chr3 59439316 59439421 -100160362 + (CAAA)n Simple_repeat Simple_repeat 3 104 0 4 1038 688 321 43 36 chr3 59441212 59441516 -100158267 + MLT1E3 LTR MaLR 1 306 -318 4 1038 239 286 36 93 chr3 59441594 59441733 -100158050 + ID_B1 SINE B4 93 223 -1 4 1038 311 310 17 17 chr3 59441743 59441861 -100157922 + GA-rich Low_complexity Low_complexity 3 120 0 4 1038 730 94 17 0 chr3 59441869 59441986 -100157797 + (GA)n Simple_repeat Simple_repeat 1 119 0 4 1038 183 122 40 20 chr3 59442026 59442076 -100157707 + GA-rich Low_complexity Low_complexity 4 54 0 4 1038 548 324 97 45 chr3 59442503 59442782 -100157001 - L1_Mur3 LINE L1 -1253 4890 4611 4 1038 2707 34 6 0 chr3 59442782 59443108 -100156675 - L1Md_F2 LINE L1 0 6582 6255 4 1038 548 324 97 45 chr3 59443108 59443335 -100156448 - L1_Mur3 LINE L1 -1533 4610 4358 4 1038 297 305 55 28 chr3 59443345 59443598 -100156185 - L1_Mur3 LINE L1 -1565 4315 4056 4 1038 716 296 92 9 chr3 59443615 59443952 -100155831 - L1_Mur3 LINE L1 -2132 4008 3615 4 1038 370 288 224 0 chr3 59443965 59444191 -100155592 + MTD LTR MaLR 10 285 -134 4 1038 414 0 0 0 chr3 59444235 59444281 -100155502 + (TC)n Simple_repeat Simple_repeat 2 47 0 4 1038 192 125 0 0 chr3 59444303 59444335 -100155448 + (CA)n Simple_repeat Simple_repeat 1 32 0 4 1038 935 258 172 55 chr3 59444386 59444973 -100154810 + MTC-int LTR MaLR 1 1056 -524 5 1038 803 311 111 24 chr3 59444974 59445426 -100154357 - Lx8 LINE L1 -828 6645 6155 5 1038 638 308 48 28 chr3 59445467 59445885 -100153898 - Lx8 LINE L1 -1408 6065 5647 5 1038 1778 281 78 41 chr3 59446014 59446854 -100152929 - Lx5 LINE L1 -43 7417 6269 5 1038 1435 175 94 3 chr3 59446896 59447197 -100152586 + IAPEY3_LTR LTR ERVK 1 467 -8 5 1038 947 219 24 9 chr3 59447202 59447414 -100152369 - Lx5 LINE L1 -998 6052 5838 5 1038 4064 190 39 73 chr3 59447384 59448716 -100151067 - L1_Mur3 LINE L1 -3716 2161 893 4 1038 23 97 0 0 chr3 59449251 59449323 -100150460 + AT_rich Low_complexity Low_complexity 1 72 0 5 1038 989 238 19 0 chr3 59449446 59449702 -100150081 + L1_Mur3 LINE L1 4990 5250 -630 5 1038 243 0 0 0 chr3 59450144 59450171 -100149612 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 5 1038 3196 75 0 18 chr3 59450225 59450661 -100149122 - L1_Mus2 LINE L1 -9 6557 6130 5 1038 964 265 26 23 chr3 59451546 59451812 -100147971 + MTD LTR MaLR 8 274 -145 5 1038 207 186 0 0 chr3 59451918 59451961 -100147822 + (TA)n Simple_repeat Simple_repeat 1 43 0 5 1038 240 234 88 26 chr3 59451965 59452079 -100147704 - Lx9 LINE L1 -132 7512 7392 5 1038 1134 58 0 0 chr3 59452230 59452385 -100147398 + (CA)n Simple_repeat Simple_repeat 2 156 0 5 1038 2116 185 21 40 chr3 59452385 59452778 -100147005 - RLTR20D LTR ERVK -111 457 71 5 1038 4740 48 12 0 chr3 59452778 59453365 -100146418 + L1Md_F2 LINE L1 5989 6582 0 5 1038 2116 185 21 40 chr3 59453365 59453398 -100146385 - RLTR20D LTR ERVK -498 70 39 5 1038 12344 133 31 14 chr3 59453398 59453474 -100146309 - L1_Mur2 LINE L1 -1114 4763 4695 5 1038 7279 79 23 8 chr3 59453474 59454482 -100145301 + RLTR13D2 LTR ERVK 1 1023 0 5 1038 12344 133 31 14 chr3 59454482 59456574 -100143209 - L1_Mur2 LINE L1 -1183 4694 2558 5 1038 298 303 61 0 chr3 59456574 59456673 -100143110 + RMER20A LTR ERVK 3 107 -409 5 1038 19786 116 19 2 chr3 59456673 59459779 -100140004 - L1Md_F LINE L1 -1284 4599 1442 5 1038 38976 34 2 7 chr3 59459773 59465971 -100133812 - L1Md_T LINE L1 -1 6581 416 5 1038 2844 167 19 94 chr3 59465972 59467014 -100132769 - L1Md_F LINE L1 -4430 1453 504 5 1038 2311 161 30 74 chr3 59467011 59467242 -100132541 - L1VL2 LINE L1 -2142 1473 1273 5 1038 2434 92 6 14 chr3 59467242 59467593 -100132190 - L1_Mus1 LINE L1 0 6567 6220 5 1038 5004 128 20 17 chr3 59467593 59468564 -100131219 - L1VL2 LINE L1 -2343 1272 284 5 1038 1494 208 77 22 chr3 59468562 59469014 -100130769 - L1_Mur3 LINE L1 -6393 1319 843 5 1038 789 339 38 13 chr3 59469006 59469455 -100130328 - L1_Mur3 LINE L1 -7165 547 88 5 1038 629 337 134 25 chr3 59469526 59470277 -100129506 - MER70-int LTR ERVL -799 4224 3392 5 1038 31694 81 2 2 chr3 59471174 59476366 -100123417 + L1Md_F2 LINE L1 392 5585 -298 5 1038 7380 75 3 15 chr3 59476367 59477375 -100122408 + L1Md_F2 LINE L1 5587 6582 0 5 1038 35 63 0 0 chr3 59477985 59478048 -100121735 + AT_rich Low_complexity Low_complexity 1 63 0 5 1038 2264 122 3 9 chr3 59479076 59479415 -100120368 - Lx2 LINE L1 -1072 5925 5589 5 1038 829 124 62 0 chr3 59479392 59479521 -100120262 + Lx2 LINE L1 6505 6641 -356 5 1038 1116 152 10 5 chr3 59479522 59479721 -100120062 + Lx2 LINE L1 6776 6975 -22 5 1038 410 333 121 18 chr3 59480432 59480655 -100119128 - MLT1D LTR MaLR -2 503 258 5 1038 390 331 19 32 chr3 59480740 59480896 -100118887 - RSINE1 SINE B4 -2 163 10 5 1038 537 283 20 20 chr3 59481266 59481414 -100118369 - B1F SINE Alu -1 148 1 5 1038 9201 99 0 10 chr3 59481807 59483938 -100115845 - L1_Mus2 LINE L1 0 6566 4457 5 1038 4602 94 5 0 chr3 59483938 59484600 -100115183 + L1_Mus2 LINE L1 3789 4453 -1430 5 1038 1079 188 62 47 chr3 59484897 59485154 -100114629 - Lx7 LINE L1 -53 7643 7383 5 1038 5735 129 139 23 chr3 59485187 59486275 -100113508 + Lx3A LINE L1 5759 6972 -9 5 1038 1604 228 31 31 chr3 59486289 59486679 -100113104 - Lx7 LINE L1 -328 7368 6979 5 1038 1441 213 154 46 chr3 59486699 59486746 -100113037 - Lx7 LINE L1 -1125 6571 6531 5 1038 720 35 0 0 chr3 59486746 59486833 -100112950 + (TTTC)n Simple_repeat Simple_repeat 2 88 0 5 1038 1080 86 0 0 chr3 59486833 59486972 -100112811 - B1_Mus1 SINE Alu -8 140 2 5 1038 1441 213 154 46 chr3 59486972 59487357 -100112426 - Lx7 LINE L1 -1166 6530 6092 5 1038 38446 15 25 6 chr3 59487373 59493423 -100106360 - L1Md_A LINE L1 -1 6581 422 5 1038 1294 17 29 0 chr3 59493639 59493812 -100105971 + (TCTA)n Simple_repeat Simple_repeat 3 180 0 5 1038 19362 116 14 9 chr3 59493876 59494387 -100105396 - Lx2 LINE L1 -1040 5957 5451 5 1038 210 37 0 0 chr3 59494387 59494414 -100105369 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 5 1038 19362 174 43 20 chr3 59494414 59497020 -100102763 - Lx2 LINE L1 -436 5450 2817 5 1038 189 0 0 0 chr3 59497020 59497041 -100102742 + (TG)n Simple_repeat Simple_repeat 2 22 0 5 1038 19362 174 43 20 chr3 59497041 59498004 -100101779 - Lx2 LINE L1 -3070 2816 1791 5 1038 2071 196 2 43 chr3 59498293 59498758 -100101025 - L1_Mur3 LINE L1 -836 5044 4599 5 1038 4734 189 117 19 chr3 59498761 59499978 -100099805 - L1_Mur3 LINE L1 -2266 3614 2279 5 1038 3870 219 31 58 chr3 59500002 59501243 -100098540 - L1_Mur3 LINE L1 -3603 2277 1106 1 1038 510 17 0 0 chr3 59501243 59501302 -100098481 + (GA)n Simple_repeat Simple_repeat 1 59 0 2 1038 2453 275 79 75 chr3 59501302 59502270 -100097513 - L1_Mur3 LINE L1 -6623 1105 100 1 1038 854 95 15 0 chr3 59502502 59502639 -100097144 - L1_Mm LINE L1 -3897 1986 1848 3 1038 1238 81 0 11 chr3 59502641 59502816 -100096967 + L1Md_F2 LINE L1 6398 6570 -12 4 1038 346 353 37 15 chr3 59502820 59502955 -100096828 - MTE2b LTR MaLR -182 197 60 5 1038 369 271 0 0 chr3 59502958 59503043 -100096740 - MTE2b LTR MaLR -292 87 3 5 1038 1017 323 80 13 chr3 59503071 59503598 -100096185 + MER70-int LTR ERVL 4413 4974 -49 6 1038 505 345 80 34 chr3 59503816 59503991 -100095792 + MER70A LTR ERVL 153 340 -132 6 1038 4156 56 0 41 chr3 59503991 59504532 -100095251 + MURVY-LTR LTR ERV1 1 519 0 7 1038 505 345 80 34 chr3 59504532 59504620 -100095163 + MER70A LTR ERVL 341 428 -44 6 1038 239 218 0 0 chr3 59504760 59504815 -100094968 + L1M LINE L1 5296 5350 -818 8 1038 223 333 0 14 chr3 59505264 59505337 -100094446 + ID4 SINE ID 9 80 -3 9 1038 225 0 0 0 chr3 59505935 59505960 -100093823 + (T)n Simple_repeat Simple_repeat 1 25 0 1 1039 1551 163 48 65 chr3 59507171 59507390 -100092393 + RLTR14 LTR ERV1 1 221 -161 1 1039 1763 252 75 11 chr3 59507390 59507963 -100091820 + RMER19C LTR ERVK 2 611 0 1 1039 1551 163 48 65 chr3 59507963 59508049 -100091734 + RLTR14 LTR ERV1 222 301 -81 1 1039 1314 164 244 33 chr3 59508049 59508381 -100091402 + RMER17B LTR ERVK 1 412 -546 1 1039 1232 17 0 77 chr3 59508381 59508576 -100091207 + (TCTCC)n Simple_repeat Simple_repeat 1 180 0 1 1039 1314 164 61 109 chr3 59508576 59508643 -100091140 + RMER17B LTR ERVK 413 435 -523 1 1039 1484 31 5 45 chr3 59508643 59509017 -100090766 + (TCTCC)n Simple_repeat Simple_repeat 1 359 0 1 1039 281 188 31 0 chr3 59509100 59509164 -100090619 + RMER17B LTR ERVK 893 958 0 1 1039 456 240 40 0 chr3 59509164 59509251 -100090532 + RLTR14 LTR ERV1 292 382 0 1 1039 342 0 0 0 chr3 59509313 59509351 -100090432 + (T)n Simple_repeat Simple_repeat 1 38 0 1 1039 294 29 0 0 chr3 59509983 59510018 -100089765 + (TA)n Simple_repeat Simple_repeat 2 36 0 1 1039 3385 43 0 0 chr3 59510018 59510414 -100089369 - MTA_Mm LTR MaLR 0 396 1 1 1039 7343 82 32 24 chr3 59510414 59511503 -100088280 - MTA_Mm-int LTR MaLR 0 1098 1 1 1039 3070 69 10 0 chr3 59511503 59511895 -100087888 - MTA_Mm LTR MaLR 0 396 1 1 1039 548 254 0 0 chr3 59511925 59512035 -100087748 - B1_Mus1 SINE Alu -20 128 19 1 1039 349 307 9 17 chr3 59512059 59512175 -100087608 + Lx8 LINE L1 6197 6311 -1162 2 1039 674 245 7 0 chr3 59512178 59512317 -100087466 - ORR1B2-int LTR MaLR -1300 209 70 2 1039 808 189 183 10 chr3 59512317 59512525 -100087258 - ORR1B2 LTR MaLR -123 244 1 2 1039 968 343 61 37 chr3 59512527 59513099 -100086684 + Lx8 LINE L1 6328 6913 -560 2 1039 21 57 0 0 chr3 59513105 59513140 -100086643 + AT_rich Low_complexity Low_complexity 1 35 0 2 1039 231 43 85 0 chr3 59513140 59513187 -100086596 - L1Md_F3 LINE L1 -1 6583 6533 2 1039 4952 135 54 35 chr3 59514039 59514924 -100084859 + RLTR13D6 LTR ERVK 1 902 0 2 1039 245 263 82 9 chr3 59515018 59515093 -100084690 - PB1D9 SINE Alu -68 79 3 2 1039 388 345 52 4 chr3 59516071 59516237 -100083546 - MTEb LTR MaLR -208 171 1 2 1039 700 58 0 0 chr3 59516556 59516643 -100083140 - L1_Mus2 LINE L1 -544 6022 5936 2 1039 3540 84 8 32 chr3 59516643 59517169 -100082614 + L1_Mus2 LINE L1 6053 6565 -1 2 1039 201 184 20 39 chr3 59517673 59517724 -100082059 + (CATATA)n Simple_repeat Simple_repeat 1 50 0 2 1039 21 36 0 0 chr3 59518746 59518774 -100081009 + AT_rich Low_complexity Low_complexity 1 28 0 2 1039 256 314 146 28 chr3 59519020 59519316 -100080467 - Charlie1 DNA MER1_type -5 2776 2446 3 1039 570 152 40 0 chr3 59519498 59519597 -100080186 - ORR1C1 LTR MaLR 0 378 276 3 1039 3789 209 122 16 chr3 59519597 59519693 -100080090 - ORR1C1-int LTR MaLR -294 1215 1124 3 1039 1088 50 21 0 chr3 59519693 59519834 -100079949 + B1_Mm SINE Alu 2 145 -2 3 1039 3789 209 122 16 chr3 59519834 59520566 -100079217 - ORR1C1-int LTR MaLR -386 1123 311 3 1039 186 43 0 0 chr3 59520566 59520589 -100079194 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 3 1039 1020 79 0 28 chr3 59520589 59520732 -100079051 - B1_Mus1 SINE Alu -8 140 2 3 1039 3789 209 122 16 chr3 59520732 59520863 -100078920 - ORR1C1-int LTR MaLR -1199 310 153 3 1039 923 298 24 35 chr3 59522407 59522745 -100077038 - Lx6 LINE L1 -4 7456 7123 3 1039 1052 284 35 11 chr3 59522747 59523187 -100076596 + Lx5 LINE L1 6479 6885 -575 3 1039 1736 155 134 20 chr3 59523185 59523528 -100076255 - L1_Mur3 LINE L1 -85 5795 5414 3 1039 888 233 111 5 chr3 59523524 59523714 -100076069 + Lx5 LINE L1 6988 7197 -263 3 1039 282 379 21 35 chr3 59523927 59524072 -100075711 - B4A SINE B4 -128 164 22 3 1039 3035 122 0 16 chr3 59524269 59524719 -100075064 + Lx2 LINE L1 6233 6675 -322 3 1039 359 173 27 9 chr3 59524937 59525048 -100074735 + (TA)n Simple_repeat Simple_repeat 1 113 0 4 1039 1372 225 66 53 chr3 59525333 59525901 -100073882 + RMER12 LTR ERVK 1 583 -1265 4 1039 352 298 17 17 chr3 59525957 59526073 -100073710 + RLTR22_Mur LTR ERVK 587 702 -1146 4 1039 1196 325 161 15 chr3 59526211 59527147 -100072636 + Lx8 LINE L1 6270 7341 -132 4 1039 295 351 123 0 chr3 59527156 59527270 -100072513 + RSINE1 SINE B4 5 132 -33 4 1039 228 188 15 15 chr3 59527286 59527351 -100072432 + CT-rich Low_complexity Low_complexity 2 66 0 4 1039 27 0 0 0 chr3 59527359 59527386 -100072397 + AT_rich Low_complexity Low_complexity 1 27 0 4 1039 2523 174 87 27 chr3 59527852 59528402 -100071381 + RMER4B LTR ERVK 1 583 -2 4 1039 356 169 52 0 chr3 59528423 59528500 -100071283 + L1MA8 LINE L1 6187 6267 -24 4 1039 340 248 84 35 chr3 59528769 59528911 -100070872 + RLTR40 LTR ERVK 19 167 -650 4 1039 357 348 21 21 chr3 59528912 59529103 -100070680 + Lx7 LINE L1 7160 7350 -346 5 1039 319 233 33 11 chr3 59529255 59529346 -100070437 + RLTR40 LTR ERVK 187 279 -538 4 1039 450 146 0 0 chr3 59529349 59529431 -100070352 + (TC)n Simple_repeat Simple_repeat 1 82 0 5 1039 252 0 0 0 chr3 59529431 59529459 -100070324 + (TG)n Simple_repeat Simple_repeat 1 28 0 5 1039 348 322 49 81 chr3 59529467 59529688 -100070095 + RLTR40 LTR ERVK 293 506 -311 4 1039 402 200 0 0 chr3 59529688 59529758 -100070025 + PB1D9 SINE Alu 3 72 -48 5 1039 5165 158 7 1 chr3 59529769 59530688 -100069095 + L1_Mur2 LINE L1 3691 4614 -1263 5 1039 378 114 0 0 chr3 59530698 59530768 -100069015 + L1_Mus3 LINE L1 6569 6638 0 5 1039 475 284 34 7 chr3 59530774 59530923 -100068860 - RMER15 LTR ERVL -59 516 364 5 1039 1122 95 0 0 chr3 59530925 59531073 -100068710 + B1_Mus1 SINE Alu 1 148 0 5 1039 249 86 17 33 chr3 59531078 59531138 -100068645 + (CAA)n Simple_repeat Simple_repeat 2 60 0 5 1039 198 0 0 0 chr3 59531276 59531298 -100068485 + (CA)n Simple_repeat Simple_repeat 2 23 0 5 1039 689 252 40 72 chr3 59531605 59531827 -100067956 + MTE2a LTR MaLR 152 366 -13 6 1039 1211 156 27 14 chr3 59531952 59532173 -100067610 - URR1A DNA MER1_type 0 226 3 6 1039 597 115 0 0 chr3 59532945 59533041 -100066742 + (CA)n Simple_repeat Simple_repeat 2 97 0 6 1039 375 23 0 0 chr3 59533047 59533091 -100066692 + (GA)n Simple_repeat Simple_repeat 1 44 0 6 1039 800 263 40 66 chr3 59533140 59533413 -100066370 - Lx7 LINE L1 -340 7356 7091 6 1039 35 0 0 0 chr3 59533879 59533914 -100065869 + AT_rich Low_complexity Low_complexity 1 35 0 6 1039 284 240 14 136 chr3 59534520 59534660 -100065123 - Charlie1a DNA MER1_type -229 1226 1104 6 1039 651 309 45 83 chr3 59535136 59535329 -100064454 - MTE2a LTR MaLR -101 278 81 6 1039 183 80 0 0 chr3 59535329 59535354 -100064429 + (CA)n Simple_repeat Simple_repeat 2 26 0 6 1039 651 309 45 83 chr3 59535354 59535449 -100064334 - MTE2a LTR MaLR -299 80 1 6 1039 553 291 22 28 chr3 59535918 59536098 -100063685 - B3 SINE B2 0 216 38 6 1039 7938 98 12 29 chr3 59536104 59537946 -100061837 - L1_Mus1 LINE L1 0 6567 4794 7 1039 852 124 31 0 chr3 59537946 59538075 -100061708 - B1_Mus1 SINE Alu -2 146 14 7 1039 346 282 78 78 chr3 59538075 59538100 -100061683 - B4 SINE B4 -69 223 70 7 1039 7938 98 12 29 chr3 59538100 59538444 -100061339 - L1_Mus1 LINE L1 0 4793 4461 7 1039 7214 106 3 9 chr3 59538445 59539523 -100060260 + L1_Mm LINE L1 3789 4859 -1024 7 1039 791 123 7 35 chr3 59539779 59539922 -100059861 + L1_Mm LINE L1 4839 4977 -906 7 1039 3763 174 12 6 chr3 59539986 59540666 -100059117 - RLTR22_Mur LTR ERVK -24 1824 1141 7 1039 268 163 0 0 chr3 59541244 59541287 -100058496 - RLTR22_Mur LTR ERVK -700 1148 1106 7 1039 3155 171 38 26 chr3 59541288 59541942 -100057841 - RLTR22_Mur LTR ERVK -1183 665 4 7 1039 2377 142 22 17 chr3 59541942 59542357 -100057426 - L1_Mus1 LINE L1 -1478 4399 3983 7 1039 1633 208 49 120 chr3 59542353 59543271 -100056512 - L1_Mus1 LINE L1 -5754 1230 413 7 1039 3192 234 56 79 chr3 59543540 59544571 -100055212 - RMER17B LTR ERVK -10 948 2 7 1039 440 289 49 27 chr3 59544573 59544797 -100054986 - L1_Mur3 LINE L1 -340 5540 5312 7 1039 421 93 40 0 chr3 59544817 59544892 -100054891 + (TATG)n Simple_repeat Simple_repeat 1 78 0 7 1039 226 229 157 0 chr3 59544998 59545081 -100054702 - L1M2 LINE L1 -2531 3609 3514 7 1039 315 277 85 0 chr3 59545306 59545436 -100054347 - L1M2 LINE L1 -2923 3220 3080 7 1039 29 0 0 0 chr3 59545436 59545465 -100054318 + AT_rich Low_complexity Low_complexity 1 29 0 7 1039 401 273 24 58 chr3 59545524 59545730 -100054053 + L1_Mur3 LINE L1 2689 2887 -2993 8 1039 232 300 25 0 chr3 59545917 59545997 -100053786 - Lx8 LINE L1 -234 7239 7158 8 1039 32 57 0 0 chr3 59546033 59546086 -100053697 + AT_rich Low_complexity Low_complexity 1 53 0 8 1039 5191 31 0 3 chr3 59546130 59546749 -100053034 - L1Md_T LINE L1 -1 6581 5965 8 1039 652 330 126 35 chr3 59546944 59547397 -100052386 - Lx8 LINE L1 -3 7470 6977 8 1039 1042 127 26 52 chr3 59548185 59548376 -100051407 + B2_Mm2 SINE B2 2 187 -8 8 1039 1206 213 143 0 chr3 59548421 59548749 -100051034 + Lx9 LINE L1 7261 7635 -9 8 1039 21 57 0 0 chr3 59550241 59550276 -100049507 + AT_rich Low_complexity Low_complexity 1 35 0 8 1039 416 289 15 7 chr3 59552692 59552828 -100046955 + MER3 DNA MER1_type 64 200 -9 8 1039 26 30 0 0 chr3 59552965 59552998 -100046785 + AT_rich Low_complexity Low_complexity 1 33 0 8 1039 1224 71 0 0 chr3 59553048 59553302 -100046481 + (TG)n Simple_repeat Simple_repeat 1 254 0 9 1039 302 321 145 41 chr3 59553726 59553898 -100045885 - RMER12 LTR ERVK 0 1322 1133 9 1039 4313 158 48 69 chr3 59553923 59554870 -100044913 - RMER12 LTR ERVK -395 927 1 9 1039 384 234 0 0 chr3 59554945 59555039 -100044744 + (CATA)n Simple_repeat Simple_repeat 2 95 0 9 1039 289 337 35 0 chr3 59555092 59555178 -100044605 + B1F SINE Alu 5 93 -56 9 1039 708 23 0 0 chr3 59555185 59555271 -100044512 + (TC)n Simple_repeat Simple_repeat 1 86 0 9 1039 204 40 0 0 chr3 59555271 59555295 -100044488 + (CA)n Simple_repeat Simple_repeat 1 25 0 9 1039 213 128 0 25 chr3 59555298 59555338 -100044445 + (CCA)n Simple_repeat Simple_repeat 3 41 0 9 1039 5449 120 58 7 chr3 59556747 59557637 -100042146 - Lx3_Mus LINE L1 -8 7001 6066 9 1039 1249 85 23 0 chr3 59557646 59557822 -100041961 + Lx3_Mus LINE L1 5811 5990 -1019 9 1039 1964 114 84 10 chr3 59557861 59557960 -100041823 - Lx3A LINE L1 -5 6976 6879 9 1039 186 0 88 0 chr3 59557960 59557994 -100041789 + (CACCC)n Simple_repeat Simple_repeat 3 39 0 1 1039 1964 114 84 10 chr3 59557994 59558204 -100041579 - Lx3A LINE L1 -103 6878 6645 9 1039 1976 96 26 36 chr3 59558979 59559283 -100040500 - L1Md_F2 LINE L1 -12 6570 6270 1 1039 751 73 0 10 chr3 59559297 59559394 -100040389 - L1_Mus1 LINE L1 -209 6358 6263 1 1039 9812 77 2 10 chr3 59559408 59561213 -100038570 - L1Md_F2 LINE L1 -218 6364 4579 1 1039 7166 183 106 13 chr3 59561211 59563827 -100035956 + Lx4B LINE L1 4181 7056 -2 1 1039 2930 233 104 20 chr3 59564316 59565099 -100034684 + RMER12 LTR ERVK 9 836 -486 1 1039 426 39 0 0 chr3 59565099 59565151 -100034632 + (TATG)n Simple_repeat Simple_repeat 3 54 0 1 1039 2930 224 97 50 chr3 59565151 59565609 -100034174 + RMER12 LTR ERVK 837 1037 -285 1 1039 24 0 0 0 chr3 59565756 59565780 -100034003 + AT_rich Low_complexity Low_complexity 1 24 0 1 1039 1792 246 58 51 chr3 59566095 59566643 -100033140 - Lx9 LINE L1 -542 7102 6551 1 1039 1289 265 45 6 chr3 59566668 59566989 -100032794 - Lx6 LINE L1 -1003 6457 6123 1 1039 486 0 0 0 chr3 59566989 59567043 -100032740 + (CA)n Simple_repeat Simple_repeat 1 54 0 1 1039 1289 265 45 6 chr3 59567043 59567055 -100032728 - Lx6 LINE L1 -1338 6122 6111 1 1039 2778 61 0 11 chr3 59567055 59567405 -100032378 + ORR1A1 LTR MaLR 1 346 0 1 1039 3184 36 61 0 chr3 59567405 59567848 -100031935 + ORR1A1-int LTR MaLR 1 470 -1322 1 1039 19940 74 6 1 chr3 59567849 59571134 -100028649 + L1Md_F3 LINE L1 417 3722 -2161 1 1039 15181 62 2 0 chr3 59572784 59574703 -100025080 + L1Md_F3 LINE L1 3663 5585 -298 1 1039 8008 48 12 0 chr3 59574704 59575678 -100024105 + L1Md_F3 LINE L1 5587 6572 -12 1 1039 9445 63 4 2 chr3 59575678 59577031 -100022752 + ORR1A1-int LTR MaLR 437 1792 0 1 1039 2711 54 39 3 chr3 59577031 59577365 -100022418 + ORR1A1 LTR MaLR 1 346 0 1 1039 7346 212 109 24 chr3 59577394 59577578 -100022205 - Lx6 LINE L1 -1358 6102 5872 1 1039 435 19 0 0 chr3 59577578 59577630 -100022153 + (CATA)n Simple_repeat Simple_repeat 2 53 0 1 1039 7346 179 30 31 chr3 59577630 59578483 -100021300 - Lx6 LINE L1 -9 5871 5016 1 1039 5045 122 9 10 chr3 59578483 59578559 -100021224 - Lx3_Mus LINE L1 -8 7001 6922 1 1039 2749 58 12 9 chr3 59578559 59578904 -100020879 + ORR1A1 LTR MaLR 1 346 0 1 1039 5045 122 9 10 chr3 59578904 59579598 -100020185 - Lx3_Mus LINE L1 -88 6921 6232 1 1039 7346 179 30 31 chr3 59579598 59580265 -100019518 - Lx6 LINE L1 -865 5015 4350 1 1039 3399 169 39 11 chr3 59580267 59580890 -100018893 - RLTR26 LTR ERVK -2 640 1 1 1039 45144 78 27 5 chr3 59580891 59586438 -100013345 - MERVK26-int LTR ERVK 0 6919 1259 1 1039 243 0 0 0 chr3 59586438 59586465 -100013318 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 1039 45144 78 27 5 chr3 59586465 59586775 -100013008 - MERVK26-int LTR ERVK -5661 1258 934 1 1039 2273 78 57 3 chr3 59586774 59587070 -100012713 - MERVK26-int LTR ERVK -6293 626 315 1 1039 2006 121 15 4 chr3 59587624 59587898 -100011885 - MERVK26-int LTR ERVK -6628 291 15 1 1039 722 125 0 0 chr3 59587904 59588016 -100011767 - RLTR26 LTR ERVK 0 642 531 1 1039 1802 147 148 8 chr3 59588027 59588411 -100011372 - RLTR26 LTR ERVK -204 438 1 1 1039 5222 194 34 72 chr3 59588411 59589022 -100010761 - Lx6 LINE L1 -3230 2650 2091 1 1039 189 0 0 0 chr3 59589022 59589043 -100010740 + (TTG)n Simple_repeat Simple_repeat 1 21 0 1 1039 5222 194 34 78 chr3 59589043 59589499 -100010284 - Lx6 LINE L1 -3790 2090 1691 1 1039 396 0 0 0 chr3 59589499 59589543 -100010240 + (TTTA)n Simple_repeat Simple_repeat 1 44 0 1 1039 5222 211 37 48 chr3 59589543 59590355 -100009428 - Lx6 LINE L1 -4190 1690 859 1 1039 295 305 106 17 chr3 59590347 59590527 -100009256 - Lx6 LINE L1 -7407 321 126 1 1039 340 102 68 0 chr3 59590547 59590606 -100009177 - ORR1A3-int LTR MaLR -229 1734 1672 1 1039 395 256 68 74 chr3 59590599 59590619 -100009164 - B1_Mur2 SINE Alu 0 149 136 1 1039 5363 117 28 22 chr3 59590619 59590999 -100008784 + RMER17D LTR ERVK 1 377 -512 1 1039 1319 61 0 16 chr3 59590999 59591182 -100008601 + (TCTCC)n Simple_repeat Simple_repeat 1 180 0 1 1039 5363 117 28 22 chr3 59591182 59591680 -100008103 + RMER17D LTR ERVK 378 885 -4 1 1039 453 256 68 74 chr3 59591680 59591807 -100007976 - B1_Mus2 SINE Alu -14 135 3 1 1039 441 196 22 105 chr3 59591807 59591895 -100007888 - MT2B LTR ERVL -393 191 154 1 1039 899 158 39 6 chr3 59591884 59592062 -100007721 - ORR1A2-int LTR MaLR -1219 573 390 1 1039 775 127 0 0 chr3 59592059 59592193 -100007590 - ORR1A2-int LTR MaLR -1658 134 1 1 1039 2301 100 19 0 chr3 59592193 59592514 -100007269 - ORR1A2 LTR MaLR 0 327 1 1 1039 392 318 17 11 chr3 59592541 59592722 -100007061 - Lx6 LINE L1 -7445 283 102 1 1039 267 328 23 15 chr3 59592788 59592918 -100006865 - MER70-int LTR ERVL -799 4224 4094 1 1039 527 334 98 41 chr3 59593168 59593586 -100006197 - MER70-int LTR ERVL -1224 3799 3358 1 1039 252 0 0 0 chr3 59594548 59594576 -100005207 + (T)n Simple_repeat Simple_repeat 1 28 0 1 1039 55 72 0 0 chr3 59595000 59595111 -100004672 + AT_rich Low_complexity Low_complexity 1 111 0 1 1039 4576 17 4 0 chr3 59595686 59596208 -100003575 + L1Md_T LINE L1 5063 5586 -297 1 1039 8497 36 0 2 chr3 59596208 59597206 -100002577 + L1Md_T LINE L1 5587 6582 0 1 1039 238 242 68 38 chr3 59597553 59597686 -100002097 + L1MC3 LINE L1 7639 7775 -10 1 1039 2145 62 11 0 chr3 59598201 59598473 -100001310 - L1_Mus1 LINE L1 0 6567 6293 1 1039 562 69 14 0 chr3 59598473 59598545 -100001238 + L1Md_F2 LINE L1 6173 6245 -337 1 1039 8808 120 18 23 chr3 59598560 59600230 -99999553 - Lx3A LINE L1 -1 6980 5327 1 1039 262 245 95 11 chr3 59600234 59600329 -99999454 + L1VL1 LINE L1 1 103 -6319 1 1039 4683 100 2 2 chr3 59600317 59600950 -99998833 + L1Md_F2 LINE L1 301 933 -5683 1 1039 3003 21 0 0 chr3 59600950 59601287 -99998496 - IAPLTR1a_Mm LTR ERVK 0 337 1 1 1039 57219 21 11 5 chr3 59601287 59607721 -99992062 - IAPEz-int LTR ERVK 0 6481 8 1 1039 3003 21 0 0 chr3 59607721 59608058 -99991725 - IAPLTR1a_Mm LTR ERVK 0 337 1 1 1039 31860 73 3 6 chr3 59608058 59612730 -99987053 + L1Md_F2 LINE L1 928 5534 -349 1 1039 6283 102 28 6 chr3 59612730 59613668 -99986115 + RLTR13A2 LTR ERVK 1 958 0 1 1039 15941 68 3 3 chr3 59613668 59613726 -99986057 + L1Md_F2 LINE L1 5535 5586 -297 1 1039 8110 42 4 5 chr3 59613727 59614723 -99985060 + L1Md_F2 LINE L1 5588 6582 0 1 1039 10293 100 14 28 chr3 59614731 59615469 -99984314 - L1_Mur1 LINE L1 -548 5338 4640 1 1039 270 56 0 0 chr3 59615469 59615505 -99984278 + (TTTTG)n Simple_repeat Simple_repeat 2 37 0 1 1039 10293 100 14 28 chr3 59615505 59616407 -99983376 - L1_Mur1 LINE L1 -1247 4639 3722 1 1039 1694 87 133 13 chr3 59616389 59616704 -99983079 + L1_Mur1 LINE L1 3369 3721 -2165 1 1039 438 191 24 0 chr3 59616743 59616869 -99982914 + (TA)n Simple_repeat Simple_repeat 1 129 0 1 1039 1280 256 68 115 chr3 59617137 59617988 -99981795 + RMER12 LTR ERVK 1 805 -1003 1 1039 369 205 24 48 chr3 59618045 59618171 -99981612 + RMER12 LTR ERVK 1051 1246 -158 1 1039 303 28 0 0 chr3 59618171 59618207 -99981576 + (TATG)n Simple_repeat Simple_repeat 3 38 0 1 1039 1074 292 47 25 chr3 59618570 59619252 -99980531 + L1_Mur3 LINE L1 3078 3774 -2106 1 1039 2437 177 89 22 chr3 59619454 59620002 -99979781 + RMER4B LTR ERVK 1 585 0 1 1039 268 205 77 0 chr3 59620020 59620098 -99979685 + L1MA7 LINE L1 6186 6269 -22 1 1039 311 300 62 41 chr3 59620360 59620506 -99979277 + RLTR40 LTR ERVK 19 167 -650 1 1039 1169 30 48 0 chr3 59620856 59621022 -99978761 + (GAAA)n Simple_repeat Simple_repeat 4 177 0 1 1039 697 144 15 0 chr3 59621022 59621154 -99978629 + BC1_Mm scRNA scRNA 1 134 -18 1 1039 184 149 0 41 chr3 59621155 59621204 -99978579 + GA-rich Low_complexity Low_complexity 3 49 0 1 1039 13128 88 13 8 chr3 59621206 59623268 -99976515 - L1VL4 LINE L1 -728 2831 756 1 1039 3840 14 0 0 chr3 59623268 59623704 -99976079 - L1Md_A LINE L1 0 6582 6147 1 1039 4021 177 7 39 chr3 59623704 59624298 -99975485 - L1VL4 LINE L1 -5547 755 186 1 1039 4632 134 46 0 chr3 59624282 59625000 -99974783 - L1VL4 LINE L1 -5526 776 26 1 1039 954 254 48 197 chr3 59625000 59625104 -99974679 + RLTR40 LTR ERVK 198 283 -534 1 1039 183 114 0 0 chr3 59625104 59625139 -99974644 + (TG)n Simple_repeat Simple_repeat 1 35 0 1 1039 954 254 48 197 chr3 59625139 59625315 -99974468 + RLTR40 LTR ERVK 284 429 -388 1 1039 249 33 0 0 chr3 59625315 59625345 -99974438 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 1 1039 1027 93 0 0 chr3 59625345 59625484 -99974299 - B1_Mus2 SINE Alu -8 139 1 1 1039 954 254 48 197 chr3 59625484 59625568 -99974215 + RLTR40 LTR ERVK 430 492 -325 1 1039 480 269 49 7 chr3 59625568 59625710 -99974073 + B1_Mur3 SINE Alu 1 148 -1 1 1039 954 254 48 197 chr3 59625710 59626008 -99973775 + RLTR40 LTR ERVK 493 763 -54 1 1039 324 0 0 0 chr3 59626074 59626110 -99973673 + (TG)n Simple_repeat Simple_repeat 1 36 0 1 1039 432 0 0 0 chr3 59626110 59626157 -99973626 + (GA)n Simple_repeat Simple_repeat 1 48 0 1 1039 5769 117 19 1 chr3 59626164 59627076 -99972707 + MusHAL1 LINE L1 1394 2321 -391 1 1039 677 259 39 73 chr3 59627522 59627755 -99972028 + MTE2a LTR MaLR 142 366 -13 1 1039 1094 186 51 5 chr3 59627957 59628173 -99971610 - URR1A DNA MER1_type 0 226 1 1 1039 1191 102 0 0 chr3 59628800 59628977 -99970806 + (TTCC)n Simple_repeat Simple_repeat 4 180 0 1 1039 477 0 0 0 chr3 59629068 59629121 -99970662 + (GA)n Simple_repeat Simple_repeat 2 54 0 1 1039 591 272 31 25 chr3 59629172 59629368 -99970415 - Lx7 LINE L1 -340 7356 7160 1 1039 26 0 0 0 chr3 59629814 59629840 -99969943 + AT_rich Low_complexity Low_complexity 1 26 0 1 1039 25768 120 8 30 chr3 59630837 59631537 -99968246 - L1Md_F LINE L1 -446 5437 4736 1 1039 234 0 0 0 chr3 59631537 59631563 -99968220 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1 1039 25768 120 8 30 chr3 59631563 59632921 -99966862 - L1Md_F LINE L1 -1148 4735 3424 1 1039 2002 48 4 0 chr3 59632921 59633172 -99966611 - L1Md_A LINE L1 0 6582 6331 1 1039 25768 138 30 34 chr3 59633172 59636248 -99963535 - L1Md_F LINE L1 -2460 3423 356 1 1039 331 237 10 0 chr3 59636307 59636404 -99963379 - Lx9 LINE L1 -6 7638 7541 1 1039 369 0 0 0 chr3 59636404 59636445 -99963338 + (TTTA)n Simple_repeat Simple_repeat 3 43 0 1 1039 3360 250 51 9 chr3 59636451 59636978 -99962805 - Lx9 LINE L1 -139 7505 6963 1 1039 726 12 0 0 chr3 59636978 59637061 -99962722 + (TC)n Simple_repeat Simple_repeat 2 84 0 1 1039 270 0 0 0 chr3 59637061 59637090 -99962693 + (TA)n Simple_repeat Simple_repeat 1 30 0 1 1039 3360 250 51 9 chr3 59637090 59637464 -99962319 - Lx9 LINE L1 -682 6962 6566 1 1039 25 65 0 0 chr3 59637667 59637713 -99962070 + AT_rich Low_complexity Low_complexity 1 46 0 1 1040 337 212 15 0 chr3 59637798 59637864 -99961919 + B3A SINE B2 7 73 -125 1 1040 1660 186 37 12 chr3 59637968 59638289 -99961494 - ORR1A4 LTR MaLR 0 329 1 1 1040 6041 177 8 49 chr3 59638289 59639493 -99960290 - ORR1A4-int LTR MaLR 0 1963 809 1 1040 1156 144 0 0 chr3 59639530 59639717 -99960066 - L1_Mur2 LINE L1 -1150 4727 4541 1 1040 723 272 132 39 chr3 59639731 59639817 -99959966 + L1_Mur3 LINE L1 1627 1716 -4164 1 1040 236 30 30 0 chr3 59639817 59639850 -99959933 + (CAAA)n Simple_repeat Simple_repeat 3 36 0 1 1040 723 272 132 39 chr3 59639850 59640195 -99959588 + L1_Mur3 LINE L1 1717 2098 -3782 1 1040 731 256 15 34 chr3 59640214 59640420 -99959363 - Lx5 LINE L1 -3 7047 6846 1 1040 1913 285 42 37 chr3 59640429 59641194 -99958589 + L1_Mur3 LINE L1 2119 2887 -2993 1 1040 332 357 17 35 chr3 59641375 59641549 -99958234 - Lx8 LINE L1 -208 7265 7095 1 1040 525 331 136 48 chr3 59641711 59642152 -99957631 - Lx8 LINE L1 -4 7469 6990 1 1040 876 164 190 0 chr3 59642798 59643024 -99956759 + Lx9 LINE L1 7367 7635 -9 1 1040 198 0 0 0 chr3 59643841 59643863 -99955920 + (A)n Simple_repeat Simple_repeat 1 22 0 1 1040 23 54 0 0 chr3 59644517 59644554 -99955229 + AT_rich Low_complexity Low_complexity 1 37 0 1 1040 276 30 0 0 chr3 59644715 59644748 -99955035 + (CA)n Simple_repeat Simple_repeat 2 34 0 1 1040 28 91 0 0 chr3 59644819 59644896 -99954887 + AT_rich Low_complexity Low_complexity 1 77 0 1 1040 1044 116 0 0 chr3 59645013 59645159 -99954624 - B1_Mus2 SINE Alu 0 147 2 1 1040 255 145 27 55 chr3 59646736 59646809 -99952974 - Lx3A LINE L1 0 6981 6911 1 1040 227 33 0 0 chr3 59646806 59646836 -99952947 + L1_Mur1 LINE L1 2128 2157 -3729 1 1040 6312 80 28 5 chr3 59646843 59648009 -99951774 - L1_Mus1 LINE L1 -449 6118 4919 1 1040 395 154 29 117 chr3 59647992 59648011 -99951772 + L1_Mur1 LINE L1 2129 2148 -3738 1 1040 3165 78 0 12 chr3 59648011 59648441 -99951342 + L1_Mus1 LINE L1 6142 6566 -1 1 1040 395 154 29 117 chr3 59648441 59648524 -99951259 + L1_Mur1 LINE L1 2149 2222 -3664 1 1040 316 325 9 0 chr3 59648836 59648950 -99950833 + MER3 DNA MER1_type 67 181 -28 1 1040 32 57 0 0 chr3 59649114 59649167 -99950616 + AT_rich Low_complexity Low_complexity 1 53 0 1 1040 324 0 0 0 chr3 59649761 59649797 -99949986 + (CA)n Simple_repeat Simple_repeat 1 36 0 1 1040 1779 112 109 19 chr3 59651032 59651352 -99948431 - Lx3_Mus LINE L1 -734 6275 5927 1 1040 1508 17 6 0 chr3 59651352 59651531 -99948252 + (TTCTC)n Simple_repeat Simple_repeat 1 180 0 1 1040 623 157 72 4 chr3 59651531 59651745 -99948038 - Lx3_Mus LINE L1 -906 6075 5837 1 1040 4689 90 38 13 chr3 59651745 59652435 -99947348 + Lx3_Mus LINE L1 6303 7009 0 1 1040 1523 162 132 23 chr3 59652663 59652967 -99946816 - Lx3A LINE L1 -8 6973 6637 1 1040 21 0 0 0 chr3 59653313 59653334 -99946449 + AT_rich Low_complexity Low_complexity 1 21 0 2 1040 590 287 38 16 chr3 59653601 59653785 -99945998 + Lx6 LINE L1 7135 7322 -138 2 1040 479 256 84 16 chr3 59653779 59653986 -99945797 + Lx6 LINE L1 7270 7454 -6 2 1040 2048 200 8 11 chr3 59654117 59654587 -99945196 - L1_Mur3 LINE L1 -2507 3373 2905 2 1040 2316 242 0 6 chr3 59654588 59655066 -99944717 + Lx5 LINE L1 6255 6729 -321 2 1040 609 52 0 0 chr3 59655094 59655171 -99944612 + (TA)n Simple_repeat Simple_repeat 2 78 0 2 1040 750 250 147 0 chr3 59655175 59655359 -99944424 + Lx5 LINE L1 6831 7041 -9 2 1040 544 280 229 14 chr3 59655429 59655903 -99943880 + Lx8 LINE L1 5356 5927 -1546 2 1040 914 58 6 46 chr3 59656148 59656273 -99943510 - L1_Mm LINE L1 -1514 4363 4235 2 1040 3512 15 2 0 chr3 59656273 59656668 -99943115 - MTA_Mm LTR MaLR 0 396 1 2 1040 914 33 0 48 chr3 59656668 59656691 -99943092 - L1_Mm LINE L1 -1639 4244 4222 2 1040 3240 58 0 7 chr3 59656691 59657108 -99942675 + L1Md_F2 LINE L1 6166 6579 -3 2 1040 383 372 70 0 chr3 59657111 59657283 -99942500 + Lx8 LINE L1 6209 6392 -1081 2 1040 1475 109 0 5 chr3 59657281 59657503 -99942280 - L1_Mm LINE L1 -889 4994 4774 2 1040 1042 123 0 0 chr3 59657507 59657669 -99942114 - L1_Mm LINE L1 -1552 4331 4170 2 1040 7737 94 5 36 chr3 59657662 59659382 -99940401 + L1_Mus3 LINE L1 4993 6638 0 2 1040 1734 317 45 72 chr3 59659425 59660315 -99939468 + Lx8 LINE L1 6382 7247 -226 2 1040 387 0 0 0 chr3 59660371 59660414 -99939369 + (TA)n Simple_repeat Simple_repeat 2 44 0 2 1040 285 286 97 9 chr3 59660729 59660842 -99938941 - ORR1D2 LTR MaLR -247 123 1 2 1040 5854 36 1 1 chr3 59660957 59661657 -99938126 + L1Md_F2 LINE L1 5883 6582 0 2 1040 424 336 55 28 chr3 59661677 59661894 -99937889 + ORR1E LTR MaLR 135 357 -2 2 1040 2002 309 36 73 chr3 59661898 59662741 -99937042 + ORR1E-int LTR MaLR 1 811 -559 2 1040 217 307 120 45 chr3 59663146 59663213 -99936570 - ID_B1 SINE B4 -1 223 82 2 1040 241 292 31 0 chr3 59663213 59663278 -99936505 - PB1D10 SINE Alu -50 67 1 2 1040 216 67 0 0 chr3 59663573 59663603 -99936180 + (T)n Simple_repeat Simple_repeat 1 30 0 2 1040 707 173 59 11 chr3 59663827 59664014 -99935769 - Lx9 LINE L1 -1 7643 7448 2 1040 431 291 9 9 chr3 59666212 59666323 -99933460 - MTE2a LTR MaLR -9 370 260 2 1040 459 367 75 53 chr3 59666756 59666954 -99932829 + B4 SINE B4 3 195 -97 2 1040 789 11 0 0 chr3 59666954 59667044 -99932739 + (GAAA)n Simple_repeat Simple_repeat 3 92 0 2 1040 459 367 75 53 chr3 59667044 59667127 -99932656 + B4 SINE B4 196 289 -3 2 1040 423 0 0 0 chr3 59667132 59667179 -99932604 + (CA)n Simple_repeat Simple_repeat 2 48 0 2 1040 678 80 18 0 chr3 59667514 59667627 -99932156 - L1Md_F2 LINE L1 -13 6569 6455 2 1040 492 316 93 21 chr3 59667631 59667867 -99931916 - Lx8 LINE L1 -117 7356 7104 2 1040 949 310 29 14 chr3 59668054 59668398 -99931385 - Lx8 LINE L1 -144 7329 6981 2 1040 2555 201 87 22 chr3 59668438 59669039 -99930744 - RLTR26 LTR ERVK -1 641 2 2 1040 3620 71 35 2 chr3 59671887 59672367 -99927416 - L1_Mus1 LINE L1 -1 6566 6071 2 1040 279 79 0 0 chr3 59673193 59673231 -99926552 + (TG)n Simple_repeat Simple_repeat 2 39 0 2 1040 320 289 84 55 chr3 59673453 59673658 -99926125 - MTD LTR MaLR 0 379 173 2 1040 371 258 595 68 chr3 59673648 59673821 -99925962 - MTD LTR MaLR -155 264 1 2 1040 895 265 47 7 chr3 59673821 59674098 -99925685 - MTD-int LTR MaLR 0 1258 971 2 1040 246 212 54 140 chr3 59674092 59674185 -99925598 - MTD-int LTR MaLR -968 290 206 2 1040 886 287 55 0 chr3 59674201 59674438 -99925345 - MTD LTR MaLR -169 250 1 2 1040 310 275 32 21 chr3 59674504 59674597 -99925186 - Lx8 LINE L1 -217 7256 7163 2 1040 702 296 10 10 chr3 59674798 59674999 -99924784 - B3 SINE B2 -12 204 4 2 1040 505 316 67 54 chr3 59675399 59675623 -99924160 - B4A SINE B4 -62 230 4 2 1040 756 344 115 56 chr3 59675623 59676357 -99923426 - MER45B DNA Tip100 -249 791 14 2 1040 349 239 18 0 chr3 59676454 59676563 -99923220 + Lx9 LINE L1 7533 7643 -1 2 1040 673 257 46 0 chr3 59677203 59677355 -99922428 - B3 SINE B2 -57 159 1 2 1040 423 0 0 0 chr3 59678904 59678951 -99920832 + (TTTCC)n Simple_repeat Simple_repeat 4 50 0 2 1040 276 289 143 85 chr3 59679059 59679248 -99920535 - B4 SINE B4 -88 204 5 2 1040 1135 49 14 0 chr3 59679314 59679458 -99920325 + B1_Mm SINE Alu 1 146 -1 2 1040 22 0 0 0 chr3 59681289 59681311 -99918472 + AT_rich Low_complexity Low_complexity 1 22 0 2 1040 1025 150 67 0 chr3 59681491 59681671 -99918112 + ETnERV2-int LTR ERVK 2053 2244 -5162 2 1040 5542 120 35 9 chr3 59681662 59682571 -99917212 + ETnERV2-int LTR ERVK 2494 3426 -3980 2 1040 351 173 0 26 chr3 59682571 59682648 -99917135 + RMER16-int LTR ERVK 3279 3353 -2053 2 1040 4682 125 38 13 chr3 59682648 59683837 -99915946 + RLTR45-int LTR ERVK 5209 6071 -1173 2 1040 4301 177 71 8 chr3 59683851 59684700 -99915083 + RLTR13D6 LTR ERVK 1 902 0 2 1040 704 208 0 7 chr3 59684704 59684849 -99914934 - L1_Mur3 LINE L1 -114 5766 5623 2 1040 1703 242 33 13 chr3 59684847 59685244 -99914539 + Lx6 LINE L1 6887 7291 -169 2 1040 359 299 51 0 chr3 59685309 59685426 -99914357 + Lx7 LINE L1 7186 7308 -388 2 1040 26 50 0 0 chr3 59685594 59685634 -99914149 + AT_rich Low_complexity Low_complexity 1 40 0 2 1040 332 241 0 25 chr3 59685823 59685904 -99913879 + RMER1B Other Other 73 151 -915 2 1040 974 260 21 141 chr3 59686028 59686448 -99913335 + RMER1B Other Other 110 479 -587 2 1040 288 231 0 44 chr3 59687749 59687817 -99911966 + RSINE1 SINE B4 55 119 -46 2 1040 831 48 0 0 chr3 59687855 59687959 -99911824 + (CA)n Simple_repeat Simple_repeat 1 104 0 2 1040 6592 248 43 50 chr3 59688288 59689943 -99909840 - Lx6 LINE L1 -2 7458 5813 2 1040 2459 115 105 0 chr3 59689943 59690344 -99909439 - L1_Mus3 LINE L1 -1 6637 6195 2 1040 6592 248 43 50 chr3 59690344 59690437 -99909346 - Lx6 LINE L1 -1648 5812 5723 2 1040 6349 87 13 0 chr3 59690450 59691322 -99908461 - L1_Mus1 LINE L1 -1 6566 5684 2 1040 16886 26 13 0 chr3 59691348 59693967 -99905816 - L1Md_A LINE L1 0 6582 3914 2 1040 3653 236 47 38 chr3 59693950 59695504 -99904279 + Lx7 LINE L1 5050 6619 -1077 2 1040 337 346 121 85 chr3 59695598 59695625 -99904158 + RMER21A LTR ERV1 368 396 -551 2 1040 258 32 0 0 chr3 59695625 59695656 -99904127 + (CAAGA)n Simple_repeat Simple_repeat 5 35 0 2 1040 337 346 121 85 chr3 59695656 59695934 -99903849 + RMER21A LTR ERV1 397 684 -263 2 1040 1324 234 80 6 chr3 59696036 59696388 -99903395 + Lx7 LINE L1 6616 6993 -703 2 1040 884 215 185 42 chr3 59696385 59696671 -99903112 + Lx7 LINE L1 7370 7696 0 2 1040 352 217 4 0 chr3 59696695 59696791 -99902992 + Lx7 LINE L1 5337 5440 -440 2 1040 233 0 62 0 chr3 59696798 59696830 -99902953 + (CAAA)n Simple_repeat Simple_repeat 3 36 0 2 1040 2641 191 21 52 chr3 59696956 59697536 -99902247 - RMER15 LTR ERVL 0 575 14 2 1040 851 232 78 7 chr3 59697550 59697819 -99901964 + Lx7 LINE L1 5636 5923 -1773 2 1040 671 301 76 28 chr3 59697892 59698326 -99901457 + Lx7 LINE L1 6022 6488 -1208 2 1040 430 256 152 48 chr3 59698510 59698740 -99901043 - MTD-int LTR MaLR -1004 254 1 2 1040 1294 266 63 37 chr3 59698784 59699163 -99900620 - MTD LTR MaLR -30 389 1 2 1040 497 261 125 88 chr3 59699175 59699503 -99900280 + L1_Mur3 LINE L1 3622 3961 -1919 2 1040 212 293 0 13 chr3 59699551 59699627 -99900156 + GA-rich Low_complexity Low_complexity 3 77 0 2 1040 243 274 105 0 chr3 59699708 59699832 -99899951 + L1_Mur3 LINE L1 4074 4210 -1670 2 1040 266 261 0 59 chr3 59700149 59700267 -99899516 + CT-rich Low_complexity Low_complexity 3 113 0 2 1040 241 301 59 24 chr3 59700289 59700374 -99899409 - ID_B1 SINE B4 0 224 137 2 1040 547 287 66 101 chr3 59700487 59700805 -99898978 - MLT1E3 LTR MaLR -317 307 1 2 1040 25 51 0 0 chr3 59702616 59702655 -99897128 + AT_rich Low_complexity Low_complexity 1 39 0 2 1040 334 285 187 63 chr3 59703066 59703381 -99896402 - Charlie1b DNA MER1_type -162 361 8 2 1040 33 25 0 0 chr3 59704178 59704218 -99895565 + AT_rich Low_complexity Low_complexity 1 40 0 2 1040 10801 166 36 22 chr3 59704226 59706694 -99893089 - Lx5 LINE L1 -3 7047 4121 2 1040 1706 199 97 42 chr3 59706694 59707167 -99892616 - RLTR16 LTR ERVK -3 502 4 2 1040 10801 153 25 26 chr3 59707167 59707416 -99892367 - Lx5 LINE L1 -1757 4120 3869 2 1040 1222 291 36 62 chr3 59707413 59707566 -99892217 - Lx6 LINE L1 -191 7269 7111 2 1040 477 0 0 0 chr3 59707566 59707619 -99892164 + (CA)n Simple_repeat Simple_repeat 2 54 0 2 1040 531 0 0 0 chr3 59707619 59707677 -99892106 + (GA)n Simple_repeat Simple_repeat 2 60 0 2 1040 1222 291 36 62 chr3 59707677 59707943 -99891840 - Lx6 LINE L1 -350 7110 6861 2 1040 5814 218 80 41 chr3 59707939 59709329 -99890454 - Lx6 LINE L1 -1067 6393 4059 2 1040 459 52 0 0 chr3 59709329 59709387 -99890396 + (GA)n Simple_repeat Simple_repeat 1 58 0 2 1040 5814 176 54 50 chr3 59709387 59709403 -99890380 - Lx6 LINE L1 -1821 4059 4051 2 1040 3353 87 6 37 chr3 59709403 59709891 -99889892 - MT2C_Mm LTR ERVL -2 473 1 2 1040 5814 210 88 59 chr3 59709891 59711734 -99888049 - Lx6 LINE L1 -1830 4050 2119 2 1040 1334 112 46 9 chr3 59711734 59711950 -99887833 + L1Md_F2 LINE L1 6359 6582 0 2 1040 5047 251 128 68 chr3 59711950 59712278 -99887505 - Lx6 LINE L1 -3759 2118 1719 2 1040 2983 158 38 17 chr3 59712278 59712806 -99886977 - Lx4A LINE L1 0 7058 6520 2 1040 5047 209 84 44 chr3 59712806 59713347 -99886436 - Lx6 LINE L1 -4159 1718 1150 2 1040 9619 92 20 25 chr3 59713357 59714780 -99885003 - Lx3_Mus LINE L1 -8 7001 5587 2 1040 4201 192 43 35 chr3 59714772 59714816 -99884967 - L1_Mur2 LINE L1 -5950 762 748 2 1040 221 0 35 0 chr3 59714816 59714845 -99884938 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 2 1040 1150 61 0 0 chr3 59714845 59714992 -99884791 - B1_Mm SINE Alu 0 147 1 2 1040 4201 155 45 7 chr3 59714992 59715725 -99884058 - L1_Mur2 LINE L1 -5965 747 2 2 1040 303 288 41 54 chr3 59715747 59715894 -99883889 - L1MD LINE L1 -2909 3237 3093 2 1040 30 27 0 0 chr3 59716242 59716279 -99883504 + AT_rich Low_complexity Low_complexity 1 37 0 2 1040 557 271 16 0 chr3 59716282 59716411 -99883372 - ID_B1 SINE B4 -12 212 82 2 1040 315 0 0 0 chr3 59716847 59716882 -99882901 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 2 1040 1011 212 19 170 chr3 59716887 59717211 -99882572 + RLTR30 LTR ERV1 1 275 -104 2 1040 2120 147 22 42 chr3 59717421 59717825 -99881958 - RMER10B LTR ERVL 0 398 3 2 1040 486 303 65 10 chr3 59718819 59718964 -99880819 - L1MB2 LINE L1 -233 5938 5793 2 1040 270 0 0 0 chr3 59718964 59718994 -99880789 + (CA)n Simple_repeat Simple_repeat 2 31 0 2 1040 486 303 65 10 chr3 59718994 59719138 -99880645 - L1MB2 LINE L1 -379 5792 5634 2 1040 441 288 104 0 chr3 59719199 59719324 -99880459 - RSINE1 SINE B4 -24 141 4 2 1040 477 289 50 40 chr3 59719467 59719766 -99880017 - L1MB2 LINE L1 -608 5563 5262 2 1040 896 272 115 0 chr3 59719771 59720050 -99879733 - Lx8 LINE L1 -191 7282 6972 2 1040 347 247 96 19 chr3 59720112 59720269 -99879514 - L1MB2 LINE L1 -939 5201 5033 2 1040 29 0 0 0 chr3 59720313 59720342 -99879441 + AT_rich Low_complexity Low_complexity 1 29 0 2 1040 21 71 0 0 chr3 59720792 59720834 -99878949 + AT_rich Low_complexity Low_complexity 1 42 0 2 1040 341 43 21 0 chr3 59720842 59720889 -99878894 + (TG)n Simple_repeat Simple_repeat 2 49 0 2 1040 447 280 0 0 chr3 59720890 59720997 -99878786 - RSINE1 SINE B4 -40 125 19 2 1040 790 174 12 0 chr3 59721027 59721194 -99878589 + CT-rich Low_complexity Low_complexity 3 171 0 2 1040 474 336 54 100 chr3 59721696 59722066 -99877717 - ORR1E LTR MaLR 0 359 7 3 1040 516 93 0 0 chr3 59722151 59722226 -99877557 + (TC)n Simple_repeat Simple_repeat 2 76 0 3 1040 516 298 118 61 chr3 59722284 59722325 -99877458 - B4 SINE B4 -24 268 233 3 1040 1374 168 163 30 chr3 59722325 59722505 -99877278 - RMER17C LTR ERVK 0 410 183 3 1040 621 49 0 0 chr3 59722505 59722586 -99877197 + (GA)n Simple_repeat Simple_repeat 2 82 0 3 1040 1374 168 163 30 chr3 59722586 59722767 -99877016 - RMER17C LTR ERVK -228 182 1 3 1040 532 317 110 55 chr3 59722767 59722938 -99876845 - B4 SINE B4 -60 232 41 3 1040 1775 206 53 8 chr3 59722938 59723315 -99876468 - ORR1B1 LTR MaLR 0 394 1 3 1040 532 317 110 55 chr3 59723315 59723355 -99876428 - B4 SINE B4 -252 40 1 3 1040 381 236 108 32 chr3 59723355 59723496 -99876287 - MLT1A0 LTR MaLR -208 157 3 3 1040 611 93 84 0 chr3 59723961 59724068 -99875715 + Lx9 LINE L1 7318 7433 -211 3 1040 549 30 0 0 chr3 59724068 59724135 -99875648 + (CCCTAA)n Simple_repeat Simple_repeat 4 70 0 3 1040 3525 98 0 0 chr3 59724693 59725173 -99874610 - L1_Mus4 LINE L1 -409 6227 5748 3 1040 1550 131 11 61 chr3 59725168 59725429 -99874354 + L1_Mus4 LINE L1 6252 6499 -137 3 1040 344 72 0 18 chr3 59725445 59725502 -99874281 + (TAA)n Simple_repeat Simple_repeat 2 57 0 3 1040 4623 188 37 9 chr3 59726015 59727147 -99872636 + Lx5 LINE L1 5401 6573 -477 3 1040 555 265 103 54 chr3 59727142 59727365 -99872418 + Lx5 LINE L1 6804 7037 -13 3 1040 270 81 0 0 chr3 59727368 59727405 -99872378 + (TAAA)n Simple_repeat Simple_repeat 3 39 0 3 1040 457 323 42 42 chr3 59727841 59728006 -99871777 - MLT2B2 LTR ERVL -106 409 245 3 1040 400 316 91 82 chr3 59728465 59728696 -99871087 - MLT2B2 LTR ERVL -283 237 5 3 1040 1078 101 0 7 chr3 59730654 59730803 -99868980 - B1_Mus1 SINE Alu 0 148 1 3 1040 624 27 0 0 chr3 59731225 59731299 -99868484 + (TG)n Simple_repeat Simple_repeat 1 74 0 3 1040 1872 333 63 14 chr3 59731465 59732257 -99867526 - Lx8 LINE L1 -192 7281 6451 3 1040 310 366 32 19 chr3 59732471 59732627 -99867156 - Lx8 LINE L1 -238 7235 7078 3 1040 459 63 0 0 chr3 59733517 59733580 -99866203 + (CAGA)n Simple_repeat Simple_repeat 2 64 0 3 1040 222 37 0 0 chr3 59734168 59734195 -99865588 + (CAGT)n Simple_repeat Simple_repeat 4 30 0 3 1040 438 157 0 0 chr3 59735398 59735481 -99864302 + (CAAT)n Simple_repeat Simple_repeat 1 83 0 3 1040 279 226 0 36 chr3 59736864 59736919 -99862864 - BC1_Mm scRNA scRNA -78 74 22 3 1040 265 250 36 0 chr3 59736872 59736928 -99862855 - ID SINE ID -155 69 12 3 1040 467 337 57 112 chr3 59737242 59737643 -99862140 - MTEa LTR MaLR 0 379 1 3 1040 225 108 0 0 chr3 59738401 59738438 -99861345 + (CA)n Simple_repeat Simple_repeat 2 38 0 3 1040 4042 116 28 31 chr3 59738440 59739125 -99860658 - RLTR22_Mur LTR ERVK -1089 759 77 3 1040 405 39 0 0 chr3 59739678 59739729 -99860054 + (CA)n Simple_repeat Simple_repeat 2 52 0 3 1040 443 248 34 74 chr3 59741026 59741174 -99858609 + B1_Mur2 SINE Alu 3 144 -5 3 1040 222 37 0 0 chr3 59742509 59742536 -99857247 + (T)n Simple_repeat Simple_repeat 1 27 0 3 1040 215 273 78 0 chr3 59743697 59743774 -99856009 + BC1_Mm scRNA scRNA 2 84 -68 3 1040 267 310 11 0 chr3 59744835 59744922 -99854861 + (CA)n Simple_repeat Simple_repeat 1 88 0 3 1040 737 330 18 54 chr3 59744987 59745266 -99854517 - B4A SINE B4 0 292 24 3 1040 311 365 9 0 chr3 59745322 59745437 -99854346 - RMER15 LTR ERVL -41 534 419 3 1040 22 0 0 0 chr3 59745893 59745915 -99853868 + AT_rich Low_complexity Low_complexity 1 22 0 3 1040 393 333 99 7 chr3 59745935 59746077 -99853706 + MER70-int LTR ERVL 3232 3386 -1637 3 1040 752 327 98 23 chr3 59746309 59746878 -99852905 + MER70-int LTR ERVL 3678 4289 -734 3 1040 330 351 101 29 chr3 59747760 59747968 -99851815 + MER70B LTR ERVL 99 321 -257 3 1040 2096 195 153 12 chr3 59748022 59748695 -99851088 + Lx4A LINE L1 6113 6880 -178 3 1040 315 65 0 0 chr3 59749095 59749141 -99850642 + (CAAAA)n Simple_repeat Simple_repeat 2 47 0 3 1040 1335 70 5 0 chr3 59749440 59749625 -99850158 + L1Md_F2 LINE L1 6392 6577 -5 3 1040 1037 184 20 45 chr3 59749652 59750193 -99849590 + RMER17C LTR ERVK 3 410 0 3 1040 1813 216 116 100 chr3 59750193 59750944 -99848839 + RMER17C-int LTR ERVK 1 763 -2475 3 1040 557 151 0 11 chr3 59751417 59751504 -99848279 + 7SLRNA srpRNA srpRNA 182 267 -47 3 1040 8902 142 85 82 chr3 59751915 59753189 -99846594 + RMER17C-int LTR ERVK 1276 2521 -717 3 1040 207 0 0 0 chr3 59753189 59753212 -99846571 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 3 1040 239 244 0 0 chr3 59753222 59753267 -99846516 - LSU-rRNA_Hsa rRNA rRNA -789 4246 4202 3 1040 8902 142 85 82 chr3 59753267 59753558 -99846225 + RMER17C-int LTR ERVK 2533 2874 -364 3 1040 495 0 0 0 chr3 59753558 59753613 -99846170 + (TG)n Simple_repeat Simple_repeat 2 56 0 3 1040 8902 142 85 82 chr3 59753613 59753928 -99845855 + RMER17C-int LTR ERVK 2875 3215 -23 3 1040 1048 80 15 0 chr3 59753944 59754081 -99845702 - B1_Mus2 SINE Alu -8 139 1 3 1040 859 205 12 48 chr3 59754117 59754434 -99845349 + RMER17C LTR ERVK 1 253 -157 3 1040 240 35 0 0 chr3 59754434 59754463 -99845320 + (TCTCTG)n Simple_repeat Simple_repeat 2 30 0 3 1040 859 231 15 39 chr3 59754463 59754667 -99845116 + RMER17C LTR ERVK 211 410 0 3 1040 340 368 85 6 chr3 59755016 59755180 -99844603 - MER54A LTR ERVL -380 521 345 3 1040 313 328 144 35 chr3 59755428 59755630 -99844153 - MLT2B2 LTR ERVL -277 238 15 3 1040 34 24 0 0 chr3 59756506 59756547 -99843236 + AT_rich Low_complexity Low_complexity 1 41 0 3 1040 21 36 0 0 chr3 59757667 59757695 -99842088 + AT_rich Low_complexity Low_complexity 1 28 0 3 1040 3779 61 0 0 chr3 59758031 59758505 -99841278 - L1Md_F2 LINE L1 -11 6571 6098 3 1040 8508 62 4 1 chr3 59758732 59759867 -99839916 - L1_Mm LINE L1 -2844 3039 1901 3 1040 1253 153 0 0 chr3 59760368 59760564 -99839219 - Lx2 LINE L1 -409 6588 6393 3 1040 1803 150 94 6 chr3 59760565 59760907 -99838876 + Lx2 LINE L1 6604 6975 -22 3 1040 585 28 0 0 chr3 59761970 59762041 -99837742 + (TC)n Simple_repeat Simple_repeat 2 72 0 3 1040 297 109 0 0 chr3 59762790 59762845 -99836938 + (A)n Simple_repeat Simple_repeat 1 55 0 3 1040 227 226 19 0 chr3 59763123 59763176 -99836607 + (CAAT)n Simple_repeat Simple_repeat 1 54 0 3 1040 4015 43 0 4 chr3 59763361 59763853 -99835930 - L1Md_F2 LINE L1 -1 6581 6092 3 1040 533 326 48 117 chr3 59765406 59765799 -99833984 - MTEa LTR MaLR -13 366 1 3 1040 230 81 0 26 chr3 59766567 59766605 -99833178 + (TA)n Simple_repeat Simple_repeat 2 38 0 3 1040 5010 149 56 19 chr3 59767198 59767746 -99832037 - L1_Mur2 LINE L1 -631 5246 4661 3 1040 4176 127 107 8 chr3 59767746 59768482 -99831301 - RMER17D2 LTR ERVK 0 809 1 3 16 5010 149 56 19 chr3 59768482 59768879 -99830904 - L1_Mur2 LINE L1 -1217 4660 4266 3 1041 6729 59 32 0 chr3 59768891 59769755 -99830028 - L1_Mus2 LINE L1 0 6566 5675 3 1041 308 280 0 0 chr3 59769758 59769833 -99829950 + B1_Mur3 SINE Alu 63 137 -12 3 1041 282 169 54 47 chr3 59769859 59770008 -99829775 + (TATAA)n Simple_repeat Simple_repeat 2 151 0 3 1041 21908 161 30 21 chr3 59770009 59774230 -99825553 - ETnERV2-int LTR ERVK -213 7193 2164 3 1041 340 344 134 45 chr3 59774296 59774497 -99825286 - B4A SINE B4 -73 219 1 3 1041 216 0 0 0 chr3 59774786 59774810 -99824973 + (T)n Simple_repeat Simple_repeat 1 24 0 3 1041 275 388 0 0 chr3 59775356 59775436 -99824347 + PB1D10 SINE Alu 1 80 -37 3 1041 288 0 0 0 chr3 59775460 59775492 -99824291 + (CA)n Simple_repeat Simple_repeat 2 33 0 3 1041 479 338 0 40 chr3 59776793 59776941 -99822842 + B1_Mur2 SINE Alu 3 144 -5 3 1041 266 312 12 0 chr3 59779237 59779317 -99820466 + ID4 SINE ID 3 83 0 3 1041 360 0 0 0 chr3 59780377 59780417 -99819366 + (TCTA)n Simple_repeat Simple_repeat 4 43 0 3 1041 656 361 27 0 chr3 59780428 59780691 -99819092 - B4A SINE B4 -2 290 21 3 1041 393 331 8 0 chr3 59780747 59780868 -99818915 - RMER15 LTR ERVL -36 539 418 3 1041 281 248 140 9 chr3 59781220 59781334 -99818449 + MER70-int LTR ERVL 3014 3142 -1881 3 1041 3345 40 0 0 chr3 59781335 59781731 -99818052 - MTA_Mm LTR MaLR 0 396 1 3 1041 1317 338 46 15 chr3 59782298 59782967 -99816816 + MER70-int LTR ERVL 4296 4985 -38 3 1041 315 71 0 0 chr3 59783035 59783077 -99816706 + (TATG)n Simple_repeat Simple_repeat 3 44 0 3 1041 221 347 53 0 chr3 59783094 59783169 -99816614 - ID4_ SINE ID -1 82 4 3 1041 581 375 155 11 chr3 59783169 59783545 -99816238 + MER70B LTR ERVL 40 470 -2 3 1041 1638 189 144 40 chr3 59783781 59784411 -99815372 + Lx4B LINE L1 6118 6813 -245 3 1041 7223 98 25 1 chr3 59784419 59784669 -99815114 - L1_Mus3 LINE L1 -3 6635 6384 3 1041 672 13 0 0 chr3 59784669 59784746 -99815037 + (TG)n Simple_repeat Simple_repeat 2 78 0 3 1041 8673 126 18 2 chr3 59784746 59786419 -99813364 - L1_Mus3 LINE L1 -255 6383 4678 3 1041 311 0 26 0 chr3 59786419 59786458 -99813325 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 3 1041 8673 150 12 2 chr3 59786458 59786718 -99813065 - L1_Mus3 LINE L1 -1206 4677 4413 3 1041 545 231 51 0 chr3 59786718 59786835 -99812948 + ETnERV2-int LTR ERVK 7070 7192 -214 3 1041 6842 65 7 0 chr3 59787015 59787756 -99812027 + RLTR13B1 LTR ERVK 1 745 -148 3 1041 3830 43 2 0 chr3 59787756 59788224 -99811559 + L1Md_F3 LINE L1 6115 6583 -1 3 1041 6842 65 7 0 chr3 59788224 59788369 -99811414 + RLTR13B1 LTR ERVK 746 891 -2 3 1041 367 293 44 33 chr3 59788777 59788957 -99810826 + RLTR45-int LTR ERVK 185 366 -6878 3 1041 2167 168 150 37 chr3 59789110 59789618 -99810165 + RMER16-int LTR ERVK 255 819 -4587 3 1041 443 125 268 10 chr3 59789623 59789720 -99810063 + RMER16-int LTR ERVK 1089 1210 -4196 3 1041 592 275 101 30 chr3 59789734 59789933 -99809850 + ETnERV2-int LTR ERVK 2455 2667 -4739 3 1041 8409 148 75 49 chr3 59789920 59791094 -99808689 + ETnERV2-int LTR ERVK 2979 4233 -3173 3 1041 183 246 44 44 chr3 59791094 59791162 -99808621 - L4 LINE RTE -1231 798 731 3 1041 8409 148 75 49 chr3 59791162 59791577 -99808206 + ETnERV2-int LTR ERVK 4234 4679 -2727 3 1041 1785 61 4 0 chr3 59791575 59791806 -99807977 + ETnERV2-int LTR ERVK 5356 5587 -1819 3 1041 33453 92 10 1 chr3 59791806 59797888 -99801895 - L1Md_F2 LINE L1 0 6582 231 3 1041 1405 81 0 0 chr3 59797890 59798076 -99801707 + ETnERV2-int LTR ERVK 5577 5762 -1644 3 1041 5561 172 68 59 chr3 59798065 59799514 -99800269 + RLTR45-int LTR ERVK 3903 5910 -1334 3 1041 905 267 15 12 chr3 59799503 59799858 -99799925 + RLTR45-int LTR ERVK 7506 7826 -391 3 1041 4519 143 23 19 chr3 59799889 59800585 -99799198 + ETnERV2-int LTR ERVK 6494 7192 -214 3 1041 18596 145 16 13 chr3 59800971 59804944 -99794839 - L1VL1 LINE L1 -1462 4421 434 3 1041 253 128 0 0 chr3 59804957 59804996 -99794787 + Lx4A LINE L1 6827 6865 -193 3 1041 2895 46 24 5 chr3 59805398 59805769 -99794014 + L1Md_F2 LINE L1 5209 5586 -297 3 1041 8306 35 0 2 chr3 59805770 59806765 -99793018 + L1Md_F2 LINE L1 5588 6580 -2 3 1041 386 197 16 16 chr3 59807175 59807299 -99792484 + (TA)n Simple_repeat Simple_repeat 2 125 0 3 1041 3921 154 24 6 chr3 59808214 59808892 -99790891 - L1_Mm LINE L1 -202 5681 4992 3 1041 1579 27 5 0 chr3 59808891 59809079 -99790704 + L1_Mus3 LINE L1 5672 5860 -778 3 1041 4027 80 6 0 chr3 59809075 59809610 -99790173 - L1_Mus3 LINE L1 -470 6168 5631 3 1041 317 282 56 7 chr3 59810074 59810228 -99789555 - MLT2B1 LTR ERVL -335 221 54 3 1041 642 13 0 0 chr3 59812632 59812707 -99787076 + (TG)n Simple_repeat Simple_repeat 2 76 0 3 1041 369 344 99 0 chr3 59812722 59812853 -99786930 - RSINE1 SINE B4 -20 145 2 4 1041 24 53 0 0 chr3 59813453 59813491 -99786292 + AT_rich Low_complexity Low_complexity 1 38 0 4 1041 524 284 98 15 chr3 59813491 59813695 -99786088 - Lx6 LINE L1 -177 7283 7063 4 1041 183 236 109 0 chr3 59813740 59813795 -99785988 + MIR SINE MIR 106 166 -96 4 1041 23 0 0 0 chr3 59815473 59815496 -99784287 + AT_rich Low_complexity Low_complexity 1 23 0 4 1041 212 188 0 15 chr3 59817188 59817253 -99782530 + T-rich Low_complexity Low_complexity 2 65 0 4 1041 531 0 0 0 chr3 59817255 59817314 -99782469 + (GA)n Simple_repeat Simple_repeat 2 60 0 4 1041 1052 259 92 6 chr3 59818060 59818334 -99781449 - MTD LTR MaLR -18 401 120 4 1041 4448 186 16 41 chr3 59818385 59819154 -99780629 - L1MA4 LINE L1 -291 6009 5293 4 1041 5757 48 0 0 chr3 59819154 59819856 -99779927 - L1Md_T LINE L1 0 6582 5881 4 1041 4448 166 6 48 chr3 59819856 59820073 -99779710 - L1MA4 LINE L1 -591 5292 5081 4 1041 479 139 11 34 chr3 59820074 59820163 -99779620 - MTC LTR MaLR -334 87 1 4 1041 204 40 0 0 chr3 59820452 59820477 -99779306 + (CA)n Simple_repeat Simple_repeat 2 26 0 4 1041 631 246 136 0 chr3 59820570 59820769 -99779014 - URR1A DNA MER1_type 0 226 1 4 1041 805 138 29 0 chr3 59821756 59821894 -99777889 - URR1B DNA MER1_type -6 219 78 4 1041 24 53 0 0 chr3 59822790 59822828 -99776955 + AT_rich Low_complexity Low_complexity 1 38 0 4 1041 359 89 18 0 chr3 59823653 59823709 -99776074 + (TTCA)n Simple_repeat Simple_repeat 1 57 0 4 1041 2224 241 66 15 chr3 59823709 59823982 -99775801 - Lx5 LINE L1 -16 7034 6753 4 1041 309 51 0 0 chr3 59823982 59824021 -99775762 + (CA)n Simple_repeat Simple_repeat 1 39 0 4 1041 2224 241 66 15 chr3 59824021 59824278 -99775505 - Lx5 LINE L1 -298 6752 6479 4 1041 1264 308 59 46 chr3 59824788 59825333 -99774450 + MTE-int LTR MaLR 102 653 -927 4 1041 380 349 64 35 chr3 59825669 59825841 -99773942 + MTE-int LTR MaLR 745 921 -659 4 1041 518 309 68 72 chr3 59825887 59826535 -99773248 - L1M2 LINE L1 -1869 4274 3630 4 1041 2744 197 46 38 chr3 59826535 59827212 -99772571 - RLTR25A LTR ERVK 0 1028 350 4 1041 1433 296 8 5 chr3 59827350 59827741 -99772042 + Lx6 LINE L1 7068 7459 -1 4 1041 825 294 160 30 chr3 59827762 59828225 -99771558 - Lx8 LINE L1 -28 7445 6923 4 1041 449 251 20 91 chr3 59829320 59829440 -99770343 - RLTR15 LTR ERVK -16 343 234 4 1041 2885 73 49 24 chr3 59829440 59829849 -99769934 + BGLII LTR ERVK 3 421 0 4 1041 449 251 20 91 chr3 59829849 59829925 -99769858 - RLTR15 LTR ERVK -126 233 161 4 1041 594 0 0 0 chr3 59829962 59830028 -99769755 + (TC)n Simple_repeat Simple_repeat 1 66 0 4 1041 26 0 0 0 chr3 59830249 59830275 -99769508 + AT_rich Low_complexity Low_complexity 1 26 0 4 1041 887 191 74 57 chr3 59830969 59831266 -99768517 - MTC LTR MaLR 0 396 15 4 1041 562 270 145 100 chr3 59831250 59831367 -99768416 - MTC-int LTR MaLR -10 1248 1135 4 1041 814 58 0 8 chr3 59831367 59831488 -99768295 + L1Md_F2 LINE L1 6463 6582 0 4 1041 2981 219 16 51 chr3 59831488 59832232 -99767551 - MTC-int LTR MaLR -122 1136 461 4 1041 420 379 101 55 chr3 59832241 59832548 -99767235 + MLT2B3 LTR ERVL 343 663 -54 4 1041 209 186 14 0 chr3 59832658 59832728 -99767055 + (TG)n Simple_repeat Simple_repeat 2 72 0 4 1041 1000 345 44 19 chr3 59832736 59833264 -99766519 - Lx8 LINE L1 -65 7408 6868 4 1041 813 73 0 0 chr3 59833274 59833383 -99766400 + (GAAA)n Simple_repeat Simple_repeat 4 112 0 4 1041 734 90 0 18 chr3 59833383 59833496 -99766287 + (GAGAA)n Simple_repeat Simple_repeat 5 115 0 4 1041 1258 161 14 9 chr3 59833536 59833756 -99766027 + URR1B DNA MER1_type 1 221 -4 4 1041 871 294 87 34 chr3 59833768 59834148 -99765635 - Lx8 LINE L1 -687 6786 6387 4 1041 484 311 57 34 chr3 59836278 59836628 -99763155 - L1_Rod LINE L1 -698 5149 4792 4 1041 22 56 0 0 chr3 59836907 59836943 -99762840 + AT_rich Low_complexity Low_complexity 1 36 0 4 1041 1628 242 26 26 chr3 59837104 59837570 -99762213 + Lx9 LINE L1 4752 5217 -630 4 1041 25 0 0 0 chr3 59837596 59837621 -99762162 + AT_rich Low_complexity Low_complexity 1 25 0 4 1041 1801 81 15 4 chr3 59837621 59837883 -99761900 - L1_Mur1 LINE L1 -5800 1182 918 4 1041 1515 224 12 76 chr3 59837889 59838414 -99761369 + Lx9 LINE L1 5468 6007 -1637 4 1041 1936 309 79 34 chr3 59838645 59839285 -99760498 + Lx9 LINE L1 6488 7182 -462 4 1041 495 0 0 0 chr3 59839285 59839340 -99760443 + (TG)n Simple_repeat Simple_repeat 1 55 0 4 1041 1936 309 79 34 chr3 59839340 59839633 -99760150 + Lx9 LINE L1 7183 7463 -181 4 1041 450 0 0 0 chr3 59839633 59839683 -99760100 + (CA)n Simple_repeat Simple_repeat 1 50 0 4 1041 186 43 0 0 chr3 59841332 59841355 -99758428 + (TTCA)n Simple_repeat Simple_repeat 3 25 0 4 1041 915 219 22 38 chr3 59842513 59842698 -99757085 + RLTR25B LTR ERVK 1 182 -846 4 1041 252 0 0 0 chr3 59844156 59844184 -99755599 + (TTTTG)n Simple_repeat Simple_repeat 4 31 0 4 1041 312 355 11 0 chr3 59844211 59844304 -99755479 - B4A SINE B4 -180 112 19 4 1041 1810 241 47 8 chr3 59844426 59844933 -99754850 - RLTR11A2 LTR ERVK 0 527 1 4 1041 1981 196 162 13 chr3 59845926 59846458 -99753325 - RMER19C LTR ERVK 0 611 1 4 1041 763 142 31 52 chr3 59846475 59846668 -99753115 - MurERV4_19-int LTR ERVK -8 5772 5584 4 1041 261 128 0 0 chr3 59846668 59846715 -99753068 + (TATG)n Simple_repeat Simple_repeat 2 48 0 4 1041 1589 205 141 15 chr3 59846776 59847236 -99752547 - MurERV4_19-int LTR ERVK -336 5444 4927 4 1041 385 171 128 22 chr3 59847261 59847365 -99752418 + RMER4B LTR ERVK 1 120 -346 4 1041 543 263 31 45 chr3 59847421 59847675 -99752108 + RMER4B LTR ERVK 291 576 -9 4 1041 293 279 81 87 chr3 59847809 59847958 -99751825 - B3A SINE B2 -7 191 44 4 1041 486 0 0 0 chr3 59848482 59848536 -99751247 + (TG)n Simple_repeat Simple_repeat 1 54 0 4 1041 683 24 12 0 chr3 59848536 59848620 -99751163 + (GA)n Simple_repeat Simple_repeat 1 86 0 4 1041 1305 2 44 0 chr3 59848973 59849808 -99749975 + (CACAG)n Simple_repeat Simple_repeat 1 871 0 4 1041 1129 12 48 0 chr3 59849825 59849992 -99749791 + (CACAG)n Simple_repeat Simple_repeat 1 175 0 4 1041 212 192 19 19 chr3 59850841 59850894 -99748889 + GA-rich Low_complexity Low_complexity 2 54 0 4 1041 3977 59 0 0 chr3 59851326 59851819 -99747964 + L1_Mus1 LINE L1 6075 6567 0 4 1041 271 309 32 0 chr3 59851867 59851961 -99747822 + L1M2 LINE L1 2788 2884 -3259 4 1041 543 78 0 0 chr3 59851998 59852075 -99747708 + (TTCC)n Simple_repeat Simple_repeat 4 80 0 4 1041 324 296 178 0 chr3 59852079 59852214 -99747569 - HAL1-3A_ME LINE L1 -421 2437 2279 4 1041 873 281 94 52 chr3 59852315 59852721 -99747062 - Lx8 LINE L1 -134 7339 6917 4 1041 250 366 59 10 chr3 59853183 59853285 -99746498 + B1F2 SINE Alu 2 108 -41 4 1041 669 142 0 0 chr3 59853300 59853413 -99746370 + (GGAA)n Simple_repeat Simple_repeat 3 115 0 4 1041 44 20 0 0 chr3 59853480 59853531 -99746252 + AT_rich Low_complexity Low_complexity 1 51 0 4 1041 483 315 39 0 chr3 59853542 59853672 -99746111 - B3A SINE B2 -15 183 49 4 1041 326 345 124 43 chr3 59853865 59854404 -99745379 + L1M4 LINE L1 3667 4249 -1897 4 1041 2418 67 9 3 chr3 59854837 59855165 -99744618 - L1_Mus3 LINE L1 -6 6632 6303 4 1041 198 0 0 0 chr3 59855355 59855377 -99744406 + (TTG)n Simple_repeat Simple_repeat 2 23 0 4 1041 6901 138 36 1 chr3 59855385 59856519 -99743264 - Lx3C LINE L1 -2 6974 5801 4 1041 220 333 50 25 chr3 59856537 59856548 -99743235 - ID4_ SINE ID 0 83 72 4 1041 477 0 0 0 chr3 59856548 59856601 -99743182 + (TC)n Simple_repeat Simple_repeat 2 54 0 4 1041 315 0 0 0 chr3 59856601 59856635 -99743148 + (TG)n Simple_repeat Simple_repeat 2 36 0 4 1041 220 333 50 25 chr3 59856635 59856702 -99743081 - ID4_ SINE ID -12 71 3 4 1041 1348 283 69 26 chr3 59857311 59857772 -99742011 - RMER15 LTR ERVL -5 570 90 4 1041 233 286 48 0 chr3 59857872 59857935 -99741848 - RMER15 LTR ERVL -509 66 1 4 1041 350 280 113 15 chr3 59858166 59858369 -99741414 + L1_Rod LINE L1 466 688 -6484 4 1041 22 0 0 0 chr3 59860214 59860236 -99739547 + AT_rich Low_complexity Low_complexity 1 22 0 4 1041 660 243 149 14 chr3 59860917 59861205 -99738578 - Lx9 LINE L1 -1 7643 7317 4 1041 427 235 70 0 chr3 59861203 59861318 -99738465 + Lx9 LINE L1 7185 7307 -337 4 1041 1079 286 139 9 chr3 59862107 59862552 -99737231 + RMER5 LTR ERV1 32 534 0 4 1041 815 246 174 21 chr3 59862602 59862889 -99736894 - Lx6 LINE L1 -9 7451 7121 4 1041 435 19 0 0 chr3 59862931 59862983 -99736800 + (TA)n Simple_repeat Simple_repeat 1 52 0 4 1041 189 184 26 0 chr3 59863167 59863205 -99736578 + MIR SINE MIR 106 144 -64 4 1041 2241 60 0 3 chr3 59863810 59864094 -99735689 - L1_Mus1 LINE L1 -2 6565 6283 4 1041 537 160 4 0 chr3 59864192 59864311 -99735472 + Lx2 LINE L1 5960 6079 -897 4 1041 4367 151 3 4 chr3 59864311 59865028 -99734755 + Lx LINE L1 5933 6648 -6 4 1041 436 198 22 73 chr3 59865028 59865069 -99734714 + Lx2B LINE L1 6080 6114 -886 4 1041 3599 129 31 17 chr3 59865133 59865716 -99734067 + Lx2 LINE L1 6053 6643 -354 4 1041 1268 117 82 0 chr3 59865716 59865808 -99733975 + Lx2 LINE L1 6775 6866 -131 4 1041 189 0 0 0 chr3 59865808 59865829 -99733954 + (TGGG)n Simple_repeat Simple_repeat 1 21 0 4 1041 1268 117 82 0 chr3 59865829 59865942 -99733841 + Lx2 LINE L1 6867 6995 -2 4 1041 417 20 0 0 chr3 59867348 59867398 -99732385 + (TG)n Simple_repeat Simple_repeat 2 51 0 4 1041 571 238 26 0 chr3 59867413 59867564 -99732219 - L1MA4 LINE L1 -361 5939 5785 4 1041 601 234 22 0 chr3 59867600 59867737 -99732046 + L1_Mur3 LINE L1 42 181 -7547 4 1041 1348 260 36 10 chr3 59867784 59868172 -99731611 + L1_Mur3 LINE L1 526 923 -6805 4 1041 1395 179 13 42 chr3 59868169 59868479 -99731304 + L1_Mur3 LINE L1 2692 2992 -2888 4 1041 1439 68 0 0 chr3 59868480 59868657 -99731126 + L1Md_F2 LINE L1 5409 5585 -298 4 1041 7077 72 29 21 chr3 59868658 59869644 -99730139 + L1Md_F2 LINE L1 5587 6580 -2 4 1041 553 133 5 199 chr3 59869649 59869855 -99729928 + L1_Mur3 LINE L1 3001 3166 -2714 4 1041 324 247 65 0 chr3 59869836 59869913 -99729870 + Lx6 LINE L1 7032 7113 -347 4 1041 468 0 0 0 chr3 59869917 59869969 -99729814 + (TTATA)n Simple_repeat Simple_repeat 4 55 0 4 1041 303 145 2 34 chr3 59869970 59870029 -99729754 + Lx7 LINE L1 7426 7481 -215 4 1041 540 0 0 0 chr3 59870029 59870089 -99729694 + (TCTTG)n Simple_repeat Simple_repeat 4 63 0 4 1041 242 299 139 9 chr3 59870089 59870144 -99729639 + Lx7 LINE L1 7222 7290 -170 4 1041 376 222 23 86 chr3 59870305 59870334 -99729449 + MT2B LTR ERVL 139 159 -442 4 1041 765 111 74 0 chr3 59870334 59870450 -99729333 + B1_Mus1 SINE Alu 4 122 -26 4 1041 183 42 0 0 chr3 59870450 59870474 -99729309 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 4 1041 765 111 74 0 chr3 59870474 59870492 -99729291 + B1_Mus1 SINE Alu 123 147 -1 4 1041 279 220 8 71 chr3 59870537 59870664 -99729119 + T-rich Low_complexity Low_complexity 3 121 0 4 1041 202 167 74 0 chr3 59870742 59870850 -99728933 + (TA)n Simple_repeat Simple_repeat 2 117 0 4 1041 248 381 0 23 chr3 59871245 59871331 -99728452 - RMER15 LTR ERVL -156 419 336 4 1041 1895 167 57 14 chr3 59871393 59871746 -99728037 + MTC LTR MaLR 1 368 -53 4 1041 1531 224 61 200 chr3 59873398 59873829 -99725954 + RMER19C LTR ERVK 1 378 -233 4 1041 207 0 0 0 chr3 59873829 59873852 -99725931 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 5 1041 1531 224 61 200 chr3 59873852 59874130 -99725653 + RMER19C LTR ERVK 379 611 0 4 1041 873 201 39 16 chr3 59874137 59874319 -99725464 + Lx9 LINE L1 7073 7258 -386 5 1041 2096 154 105 185 chr3 59874319 59874635 -99725148 - RMER6C LTR ERVK -9 681 407 5 1041 6822 41 0 4 chr3 59874635 59875461 -99724322 - L1Md_T LINE L1 0 6582 5760 5 1041 2096 154 105 185 chr3 59875461 59875884 -99723899 - RMER6C LTR ERVK -284 406 1 5 1041 563 225 58 0 chr3 59875884 59876022 -99723761 + Lx9 LINE L1 7256 7401 -243 5 1041 561 68 0 0 chr3 59876356 59876430 -99723353 + (TA)n Simple_repeat Simple_repeat 1 74 0 5 1041 261 0 0 0 chr3 59876470 59876499 -99723284 + (CA)n Simple_repeat Simple_repeat 2 30 0 5 1041 436 225 78 0 chr3 59876503 59876632 -99723151 + Lx9 LINE L1 7502 7640 -4 5 1041 1914 184 74 0 chr3 59876987 59877352 -99722431 - ORR1B1 LTR MaLR -2 392 1 5 1041 308 363 70 63 chr3 59877796 59878111 -99721672 + L1MDa LINE L1 220 536 -6097 5 1041 275 293 66 2 chr3 59878416 59878537 -99721246 + PB1D10 SINE Alu 12 146 -3 5 1041 440 325 63 8 chr3 59878600 59878854 -99720929 + L1MD1 LINE L1 5448 5715 -527 5 1041 384 278 44 23 chr3 59878898 59879099 -99720684 - MuRRS4-int LTR ERV1 -388 4675 4493 5 1041 237 231 15 15 chr3 59879381 59879447 -99720336 + L1MD1 LINE L1 5706 5771 -588 5 1041 243 125 0 0 chr3 59879451 59879491 -99720292 + (TA)n Simple_repeat Simple_repeat 2 41 0 5 1041 232 279 120 42 chr3 59879648 59879839 -99719944 + L1MD1 LINE L1 5998 6203 -39 5 1041 21 0 0 0 chr3 59880910 59880931 -99718852 + AT_rich Low_complexity Low_complexity 1 21 0 5 1041 203 0 0 36 chr3 59881008 59881026 -99718757 + (TTG)n Simple_repeat Simple_repeat 2 19 0 5 1041 195 42 0 0 chr3 59881026 59881050 -99718733 + (TCC)n Simple_repeat Simple_repeat 2 25 0 5 1041 203 0 0 36 chr3 59881050 59881059 -99718724 + (TTG)n Simple_repeat Simple_repeat 2 10 0 5 1041 270 291 168 12 chr3 59881620 59881787 -99717996 - L1_Rod LINE L1 0 5847 5655 5 1041 1708 289 108 16 chr3 59881817 59882459 -99717324 + Lx8 LINE L1 6773 7473 0 5 1041 283 0 47 23 chr3 59882577 59882620 -99717163 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 5 1041 984 124 7 0 chr3 59882620 59882757 -99717026 - B1_Mus1 SINE Alu -10 138 1 5 1041 230 362 77 14 chr3 59883481 59883624 -99716159 + MIRc SINE MIR 61 212 -56 5 1041 207 299 164 43 chr3 59883787 59883927 -99715856 - MIRc SINE MIR -50 218 62 5 1041 282 324 19 101 chr3 59884352 59884510 -99715273 - MER45A DNA Tip100 0 178 34 5 1041 627 112 0 0 chr3 59887063 59887161 -99712622 + (TA)n Simple_repeat Simple_repeat 1 98 0 5 1041 547 209 0 25 chr3 59887527 59887684 -99712099 - Lx9 LINE L1 -8 7636 7484 5 1041 1710 205 33 0 chr3 59887709 59888041 -99711742 + Lx9 LINE L1 7077 7419 -225 5 1041 875 277 56 26 chr3 59888135 59888402 -99711381 + MTE2a LTR MaLR 84 358 -21 5 1041 369 0 0 0 chr3 59889321 59889362 -99710421 + (TTTA)n Simple_repeat Simple_repeat 2 42 0 5 1041 557 286 8 0 chr3 59889721 59889854 -99709929 - B1_Mur1 SINE Alu -6 143 10 5 1041 368 268 47 131 chr3 59891887 59892123 -99707660 + B3 SINE B2 1 216 0 5 1041 755 132 23 0 chr3 59892717 59892891 -99706892 + (CA)n Simple_repeat Simple_repeat 2 179 0 5 1041 203 203 0 48 chr3 59894400 59894462 -99705321 + T-rich Low_complexity Low_complexity 4 62 0 5 1041 570 109 0 0 chr3 59897188 59897280 -99702503 + (CA)n Simple_repeat Simple_repeat 2 93 0 5 1041 275 26 0 49 chr3 59897732 59897773 -99702010 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 5 1041 231 36 0 0 chr3 59898283 59898311 -99701472 + (A)n Simple_repeat Simple_repeat 1 28 0 5 1041 237 262 0 32 chr3 59898621 59898684 -99701099 + (TAG)n Simple_repeat Simple_repeat 2 62 0 5 1041 650 293 33 9 chr3 59899314 59899524 -99700259 - B3 SINE B2 0 216 2 5 1041 1515 121 12 77 chr3 59899580 59899839 -99699944 + ORR1A2 LTR MaLR 1 242 -85 5 1042 1902 188 62 18 chr3 59899910 59900311 -99699472 + MTC LTR MaLR 1 419 -2 5 1042 1812 232 78 6 chr3 59900474 59900960 -99698823 - RLTR11A2 LTR ERVK 0 527 7 5 1042 606 221 84 0 chr3 59901609 59901740 -99698043 + B3A SINE B2 2 143 -55 5 1042 288 53 0 0 chr3 59901746 59901784 -99697999 + (CA)n Simple_repeat Simple_repeat 2 39 0 5 1042 347 331 26 58 chr3 59901994 59902148 -99697635 + B1F2 SINE Alu 1 149 0 5 1042 372 43 0 0 chr3 59902479 59902525 -99697258 + (CA)n Simple_repeat Simple_repeat 2 47 0 5 1042 210 307 0 39 chr3 59902636 59902714 -99697069 + (CCCCAG)n Simple_repeat Simple_repeat 4 78 0 5 1042 397 341 8 23 chr3 59903190 59903206 -99696577 - ID_B1 SINE B4 -11 213 87 5 1042 525 310 0 0 chr3 59903206 59903319 -99696464 - B1_Mur2 SINE Alu -31 118 6 5 1042 2869 84 0 13 chr3 59903369 59903766 -99696017 - L1Md_F2 LINE L1 -11 6571 6180 5 1042 306 304 11 56 chr3 59904263 59904441 -99695342 - Lx8 LINE L1 -2 7471 7302 5 1042 1332 299 111 21 chr3 59904430 59904988 -99694795 - Lx8 LINE L1 -522 6951 6344 5 1042 515 136 55 0 chr3 59905016 59905126 -99694657 - Lx9 LINE L1 -1 7643 7528 5 1042 192 40 0 0 chr3 59905128 59905153 -99694630 + (CA)n Simple_repeat Simple_repeat 1 25 0 5 1042 294 149 0 0 chr3 59905153 59905200 -99694583 + Lx9 LINE L1 7360 7406 -238 5 1042 497 238 6 48 chr3 59905202 59905370 -99694413 - L1_Mur3 LINE L1 -4198 1682 1522 5 1042 1074 58 0 0 chr3 59905373 59905511 -99694272 + (TTTTC)n Simple_repeat Simple_repeat 1 138 0 5 1042 3625 107 7 24 chr3 59905760 59906335 -99693448 + Lx3_Mus LINE L1 6424 6988 -21 5 1042 32 0 0 0 chr3 59906338 59906370 -99693413 + AT_rich Low_complexity Low_complexity 1 32 0 5 1042 21 36 0 0 chr3 59906454 59906482 -99693301 + AT_rich Low_complexity Low_complexity 1 28 0 5 1042 22 0 0 0 chr3 59906672 59906694 -99693089 + AT_rich Low_complexity Low_complexity 1 22 0 5 1042 328 182 11 11 chr3 59906754 59906843 -99692940 + C-rich Low_complexity Low_complexity 4 92 0 5 1042 226 308 0 0 chr3 59907182 59907234 -99692549 - MLT1J2 LTR MaLR -117 331 280 5 1042 375 350 24 52 chr3 59907590 59907801 -99691982 - MER20 DNA MER1_type -11 208 4 5 1042 239 118 75 38 chr3 59908246 59908299 -99691484 - U2 snRNA snRNA -133 55 1 5 1042 264 296 110 58 chr3 59908278 59908432 -99691351 + RLTR13D3 LTR ERVK 36 197 -836 5 1042 329 247 109 68 chr3 59909032 59909197 -99690586 + RLTR13D3 LTR ERVK 983 1114 0 5 1042 25 75 0 0 chr3 59909389 59909442 -99690341 + AT_rich Low_complexity Low_complexity 1 53 0 5 1042 655 280 82 0 chr3 59909838 59910020 -99689763 + B3A SINE B2 2 198 0 5 1042 2220 218 119 69 chr3 59910199 59911054 -99688729 + RLTR13D6 LTR ERVK 1 1033 0 5 1042 318 148 0 0 chr3 59911287 59911341 -99688442 + (CATATA)n Simple_repeat Simple_repeat 5 58 0 5 1042 22 0 0 0 chr3 59912697 59912719 -99687064 + AT_rich Low_complexity Low_complexity 1 22 0 5 1042 2892 82 0 17 chr3 59913895 59914303 -99685480 - L1Md_F2 LINE L1 0 6582 6182 5 1042 1860 62 31 0 chr3 59914303 59914560 -99685223 + L1Md_F2 LINE L1 5924 6188 -394 5 1042 601 276 57 34 chr3 59914647 59914823 -99684960 - B3 SINE B2 -34 182 3 5 1042 266 306 30 10 chr3 59915698 59915797 -99683986 - MER45A DNA Tip100 0 178 78 5 1042 28 79 0 0 chr3 59916470 59916533 -99683250 + AT_rich Low_complexity Low_complexity 1 63 0 5 1042 372 94 0 0 chr3 59917169 59917222 -99682561 + (TTA)n Simple_repeat Simple_repeat 2 54 0 5 1042 485 310 156 38 chr3 59917978 59918156 -99681627 - MTEa LTR MaLR 0 379 167 5 1042 270 0 0 0 chr3 59918156 59918186 -99681597 + (CA)n Simple_repeat Simple_repeat 2 31 0 5 1042 485 310 156 38 chr3 59918186 59918346 -99681437 - MTEa LTR MaLR -213 166 1 5 1042 208 274 0 0 chr3 59919515 59919577 -99680206 + CT-rich Low_complexity Low_complexity 2 63 0 5 1042 268 101 37 37 chr3 59919893 59919975 -99679808 + T-rich Low_complexity Low_complexity 3 84 0 5 1042 253 255 82 28 chr3 59920053 59920229 -99679554 - L1M5 LINE L1 -3241 2905 2729 5 1042 1174 266 107 87 chr3 59920281 59920877 -99678906 + RLTR18 LTR ERVK 9 616 0 5 1042 419 310 82 24 chr3 59921449 59921657 -99678126 - MLT1D LTR MaLR -1 504 285 5 1042 498 273 16 0 chr3 59921687 59921808 -99677975 + B3 SINE B2 1 123 -93 5 1042 1166 106 0 11 chr3 59921828 59922010 -99677773 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 5 1042 351 0 0 0 chr3 59922010 59922049 -99677734 + (GGAA)n Simple_repeat Simple_repeat 1 39 0 5 1042 312 310 93 25 chr3 59922133 59922295 -99677488 - MLT1D LTR MaLR -324 181 9 5 1042 210 118 0 0 chr3 59922401 59922435 -99677348 + (TTCC)n Simple_repeat Simple_repeat 3 36 0 5 1042 294 243 159 0 chr3 59922546 59922653 -99677130 + RSINE1 SINE B4 6 129 -36 5 1042 435 19 0 0 chr3 59922653 59922705 -99677078 + (TC)n Simple_repeat Simple_repeat 1 52 0 5 1042 414 0 0 0 chr3 59922705 59922750 -99677033 + (CA)n Simple_repeat Simple_repeat 1 46 0 5 1042 549 205 0 0 chr3 59923189 59923306 -99676477 + (TA)n Simple_repeat Simple_repeat 1 117 0 5 1042 5304 114 25 15 chr3 59923608 59924398 -99675385 - Lx3C LINE L1 -300 6676 5878 5 1042 2108 135 6 12 chr3 59924398 59924727 -99675056 - ORR1A2 LTR MaLR 0 327 1 5 1042 5304 114 25 15 chr3 59924727 59924803 -99674980 - Lx3C LINE L1 -1099 5877 5801 5 1042 1921 123 44 0 chr3 59924803 59925096 -99674687 + Lx3C LINE L1 6669 6974 -2 5 1042 396 0 0 0 chr3 59925096 59925140 -99674643 + (TG)n Simple_repeat Simple_repeat 2 45 0 5 1042 468 0 0 0 chr3 59925197 59925249 -99674534 + (GA)n Simple_repeat Simple_repeat 2 53 0 5 1042 1020 61 0 0 chr3 59926206 59926338 -99673445 + (TC)n Simple_repeat Simple_repeat 1 132 0 5 1042 254 301 27 0 chr3 59926345 59926418 -99673365 - L2a LINE L2 -16 3410 3336 5 1042 5294 65 10 9 chr3 59926522 59927221 -99672562 - L1Md_F2 LINE L1 -19 6563 5864 5 1042 793 50 0 0 chr3 59927221 59927320 -99672463 + L1Md_F2 LINE L1 5809 5907 -675 5 1042 798 261 125 6 chr3 59930907 59931243 -99668540 + Lx9 LINE L1 7204 7579 -65 5 1042 623 265 73 65 chr3 59931297 59931633 -99668150 + RLTR28B LTR ERVL 9 333 -191 5 1042 403 85 17 0 chr3 59931597 59931656 -99668127 - U6 snRNA snRNA -34 73 14 5 1042 1843 115 73 0 chr3 59931659 59931946 -99667837 + Lx3B LINE L1 6664 6971 -2 5 1042 22 56 0 0 chr3 59931948 59931984 -99667799 + AT_rich Low_complexity Low_complexity 1 36 0 6 1042 247 266 0 15 chr3 59932034 59932099 -99667684 + RLTR28B LTR ERVL 437 500 -24 5 1042 261 0 0 0 chr3 59932657 59932686 -99667097 + (CCA)n Simple_repeat Simple_repeat 1 29 0 6 1042 29 78 0 0 chr3 59934335 59934399 -99665384 + AT_rich Low_complexity Low_complexity 1 64 0 6 1042 346 179 0 50 chr3 59934450 59934550 -99665233 + RLTR19-int LTR ERVK 1973 2067 -3455 6 1042 619 227 41 85 chr3 59934639 59934885 -99664898 + MYSERV6-int LTR ERVK 7248 7482 -1477 6 1042 358 194 42 100 chr3 59935077 59935197 -99664586 + RLTR19-int LTR ERVK 2914 3026 -3111 6 1042 1630 201 68 8 chr3 59935328 59935723 -99664060 - Lx5 LINE L1 -826 6224 5806 6 1042 3492 207 58 1 chr3 59935723 59936463 -99663320 + Lx5 LINE L1 6265 7046 -4 6 1042 402 162 147 93 chr3 59936892 59937042 -99662741 + RLTR19-int LTR ERVK 3556 3713 -2424 6 1042 541 260 42 51 chr3 59937146 59937361 -99662422 + RMER17C-int LTR ERVK 2627 2839 -399 6 1042 260 246 81 16 chr3 59937539 59937663 -99662120 + RMER17C-int LTR ERVK 3024 3155 -83 6 1042 978 239 85 72 chr3 59937725 59938032 -99661751 + RLTR28B LTR ERVL 1 311 -170 6 1042 1089 97 0 0 chr3 59938306 59938451 -99661332 - B1_Mus1 SINE Alu -2 146 2 6 1042 276 305 135 15 chr3 59939274 59939407 -99660376 + B1F1 SINE Alu 1 149 0 6 1042 516 316 57 28 chr3 59940071 59940369 -99659414 - MER44A DNA MER2_type -10 329 20 6 1042 303 28 0 0 chr3 59940521 59940557 -99659226 + (CAA)n Simple_repeat Simple_repeat 1 36 0 6 1042 640 310 26 21 chr3 59940811 59941002 -99658781 - B3A SINE B2 -6 192 1 6 1042 276 30 0 0 chr3 59941047 59941080 -99658703 + (GA)n Simple_repeat Simple_repeat 2 34 0 6 1042 6103 51 4 13 chr3 59941476 59942253 -99657530 + L1Md_F2 LINE L1 5813 6582 0 6 1042 203 215 15 0 chr3 59943205 59943270 -99656513 + (TG)n Simple_repeat Simple_repeat 1 66 0 6 1042 234 0 0 0 chr3 59943793 59943819 -99655964 + (CAA)n Simple_repeat Simple_repeat 2 27 0 6 1042 22 0 0 0 chr3 59944597 59944619 -99655164 + AT_rich Low_complexity Low_complexity 1 22 0 6 1042 1452 197 61 20 chr3 59946482 59946876 -99652907 + RMER17C LTR ERVK 1 410 0 6 1042 319 321 113 45 chr3 59946916 59947138 -99652645 + L1ME3A LINE L1 5898 6134 -39 6 1042 283 189 45 36 chr3 59947138 59947248 -99652535 + (TA)n Simple_repeat Simple_repeat 1 111 0 6 1042 238 192 81 93 chr3 59948693 59948779 -99651004 - LTR65 LTR ERV1 -251 418 334 6 1042 2133 192 19 15 chr3 59949272 59949684 -99650099 + MTD LTR MaLR 6 419 0 6 1042 575 235 17 0 chr3 59949762 59949881 -99649902 + MTC LTR MaLR 1 121 -300 6 1042 225 205 140 18 chr3 59950082 59950196 -99649587 - L1M5 LINE L1 -734 5439 5312 6 1042 498 75 0 0 chr3 59950287 59950354 -99649429 + (TC)n Simple_repeat Simple_repeat 2 68 0 6 1042 801 184 0 20 chr3 59950390 59950540 -99649243 - B1_Mus1 SINE Alu 0 148 2 6 1042 1023 175 42 0 chr3 59950782 59950999 -99648784 - URR1A DNA MER1_type 0 226 1 6 1042 5583 50 0 1 chr3 59951049 59951737 -99648046 - L1Md_F2 LINE L1 -2 6580 5894 6 1042 1213 215 53 43 chr3 59952267 59952568 -99647215 - RLTR31_Mur LTR ERVK 0 553 250 6 1042 617 279 41 16 chr3 59952589 59952833 -99646950 - L1M2 LINE L1 -1304 4839 4590 6 1042 22 56 0 0 chr3 59953128 59953164 -99646619 + AT_rich Low_complexity Low_complexity 1 36 0 6 1042 23 54 0 0 chr3 59953475 59953512 -99646271 + AT_rich Low_complexity Low_complexity 1 37 0 6 1042 6683 104 38 15 chr3 59953726 59955371 -99644412 - L1_Mus3 LINE L1 -2 6636 4952 6 1042 384 257 68 20 chr3 59955466 59955613 -99644170 - L1M2 LINE L1 -677 5614 5461 6 1042 1211 34 0 0 chr3 59957002 59957148 -99642635 - B1_Mus2 SINE Alu 0 147 2 6 1042 459 0 0 0 chr3 59958149 59958200 -99641583 + (CA)n Simple_repeat Simple_repeat 2 52 0 6 1042 558 0 0 0 chr3 59958356 59958418 -99641365 + (TA)n Simple_repeat Simple_repeat 2 63 0 6 1042 228 258 0 70 chr3 59958793 59958864 -99640919 + L1MC1 LINE L1 6249 6314 -19 6 1042 22 35 0 0 chr3 59958891 59958920 -99640863 + AT_rich Low_complexity Low_complexity 1 29 0 6 1042 5013 119 21 39 chr3 59959402 59960802 -99638981 - L1Md_F3 LINE L1 -14 6570 5205 6 1042 1169 75 6 6 chr3 59960803 59960965 -99638818 + L1_Mm LINE L1 4719 4880 -1003 6 1042 1573 206 146 3 chr3 59960963 59961319 -99638464 - L1VL2 LINE L1 -5862 473 67 6 1042 240 282 97 35 chr3 59962033 59962147 -99637636 - L2c LINE L2 -19 3368 3248 6 1042 327 319 32 0 chr3 59963014 59963108 -99636675 + PB1D10 SINE Alu 21 117 0 6 1042 1991 265 67 35 chr3 59963184 59963271 -99636512 + RMER15-int LTR ERVL 1090 1165 -3834 6 1042 378 0 0 0 chr3 59963271 59963313 -99636470 + (TC)n Simple_repeat Simple_repeat 2 43 0 6 1042 1991 265 67 35 chr3 59963313 59963902 -99635881 + RMER15-int LTR ERVL 1166 1786 -3213 6 1042 1593 262 49 22 chr3 59963910 59964398 -99635385 + RMER15-int LTR ERVL 1889 2389 -2610 6 1042 528 345 112 21 chr3 59964489 59964818 -99634965 + Lx8 LINE L1 6896 7254 -219 6 1042 261 0 0 0 chr3 59964818 59964847 -99634936 + (TG)n Simple_repeat Simple_repeat 2 30 0 6 1042 333 125 0 0 chr3 59964844 59964900 -99634883 + (TTG)n Simple_repeat Simple_repeat 1 56 0 6 1042 525 200 96 43 chr3 59964916 59965076 -99634707 - Lx9 LINE L1 -1 7643 7480 6 1042 420 20 0 0 chr3 59965076 59965125 -99634658 + (TA)n Simple_repeat Simple_repeat 1 49 0 6 1042 369 0 0 0 chr3 59965125 59965165 -99634618 + (CA)n Simple_repeat Simple_repeat 2 42 0 6 1042 525 200 96 43 chr3 59965165 59965212 -99634571 - Lx9 LINE L1 -165 7479 7425 6 1042 961 110 14 14 chr3 59965444 59965591 -99634192 + B1_Mm SINE Alu 1 147 0 6 1042 24 32 0 0 chr3 59965716 59965747 -99634036 + AT_rich Low_complexity Low_complexity 1 31 0 6 1042 2262 209 16 31 chr3 59965951 59966460 -99633323 - Lx7 LINE L1 -1579 6117 5617 6 1042 5402 225 72 38 chr3 59966450 59967840 -99631943 + Lx7 LINE L1 6127 7563 -133 6 1042 21 36 0 0 chr3 59968283 59968311 -99631472 + AT_rich Low_complexity Low_complexity 1 28 0 6 1042 364 360 90 65 chr3 59968341 59968697 -99631086 - LTR16A LTR ERVL -84 367 3 6 1042 392 37 19 0 chr3 59968993 59969047 -99630736 + (TTTTG)n Simple_repeat Simple_repeat 2 56 0 6 1042 213 121 0 0 chr3 59969048 59969081 -99630702 + (TG)n Simple_repeat Simple_repeat 2 34 0 6 1042 289 203 81 0 chr3 59969260 59969334 -99630449 + RMER1B Other Other 60 139 -927 6 1042 1396 216 51 36 chr3 59969768 59970100 -99629683 + RMER1B Other Other 58 394 -672 6 1042 234 367 0 0 chr3 59970068 59970158 -99629625 + RMER1A Other Other 178 267 -763 6 1042 1079 107 12 0 chr3 59970158 59970326 -99629457 + (TTTC)n Simple_repeat Simple_repeat 3 172 0 6 1042 5919 140 37 13 chr3 59970326 59971304 -99628479 - Lx LINE L1 -34 6620 5620 6 1042 658 67 141 56 chr3 59971299 59971441 -99628342 + Lx LINE L1 6501 6654 0 6 1042 281 287 72 14 chr3 59971461 59971599 -99628184 + RMER1B Other Other 868 1013 -53 6 1042 252 0 0 0 chr3 59972066 59972094 -99627689 + (T)n Simple_repeat Simple_repeat 1 28 0 6 1042 450 0 0 0 chr3 59972979 59973029 -99626754 + (TG)n Simple_repeat Simple_repeat 1 50 0 6 1042 234 0 0 0 chr3 59973029 59973054 -99626729 + (GA)n Simple_repeat Simple_repeat 1 26 0 6 1042 294 313 98 34 chr3 59974208 59974443 -99625340 + L1ME2z LINE L1 5788 6037 -407 6 1042 333 100 0 0 chr3 59974738 59974788 -99624995 + (TG)n Simple_repeat Simple_repeat 1 50 0 6 1042 448 341 11 57 chr3 59975083 59975260 -99624523 + B4A SINE B4 6 174 -118 6 1042 275 328 133 33 chr3 59975321 59975501 -99624282 - MTD LTR MaLR -204 215 18 6 1042 298 78 56 46 chr3 59975563 59975671 -99624112 + T-rich Low_complexity Low_complexity 4 112 0 6 1042 504 93 0 0 chr3 59976591 59976666 -99623117 + (TGAA)n Simple_repeat Simple_repeat 3 77 0 6 1042 257 211 0 0 chr3 59976716 59976768 -99623015 + (CTTTG)n Simple_repeat Simple_repeat 3 54 0 6 1042 40 0 0 0 chr3 59977697 59977737 -99622046 + AT_rich Low_complexity Low_complexity 1 40 0 6 1042 2996 57 0 0 chr3 59977784 59978162 -99621621 - L1_Mus1 LINE L1 -431 6136 5759 6 1042 3196 61 5 0 chr3 59978162 59978569 -99621214 + L1_Mus1 LINE L1 6159 6567 0 6 1042 536 234 0 8 chr3 59978569 59978587 -99621196 - L1_Mur1 LINE L1 -125 5761 5745 6 1042 225 0 0 0 chr3 59979128 59979153 -99620630 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 6 1042 230 267 64 72 chr3 59980265 59980390 -99619393 - L1MB2 LINE L1 -27 6144 6021 6 1042 468 293 52 14 chr3 59980891 59981102 -99618681 - L1MB2 LINE L1 -635 5536 5318 6 1042 392 162 54 54 chr3 59981112 59981223 -99618560 - Lx9 LINE L1 -10 7634 7524 6 1042 623 328 72 53 chr3 59981534 59981682 -99618101 - Lx8 LINE L1 -3 7470 7339 6 1042 195 42 0 0 chr3 59981682 59981706 -99618077 + (GTTTG)n Simple_repeat Simple_repeat 2 25 0 6 1042 623 328 72 53 chr3 59981706 59981807 -99617976 - Lx8 LINE L1 -135 7338 7241 6 1042 829 99 21 14 chr3 59981807 59981951 -99617832 + L1Md_F2 LINE L1 6438 6582 0 6 1042 623 328 72 53 chr3 59981951 59982186 -99617597 - Lx8 LINE L1 -233 7240 6977 6 1042 434 275 192 34 chr3 59982414 59982862 -99616921 - L1MD2 LINE L1 -129 6230 5715 6 1042 281 394 51 11 chr3 59983014 59983191 -99616592 - MIRb SINE MIR -79 189 6 6 1042 637 325 29 39 chr3 59983437 59983645 -99616138 + Tigger7 DNA MER2_type 10 215 -2276 6 1042 476 312 99 48 chr3 59983772 59984024 -99615759 + Tigger7 DNA MER2_type 213 477 -2014 6 1042 232 234 145 23 chr3 59984005 59984136 -99615647 + Tigger7 DNA MER2_type 2239 2384 -107 6 1042 908 101 7 0 chr3 59986501 59986639 -99613144 + (TA)n Simple_repeat Simple_repeat 2 140 0 6 1042 195 227 31 0 chr3 59987644 59987741 -99612042 + (TA)n Simple_repeat Simple_repeat 2 101 0 6 1042 915 86 57 7 chr3 59988223 59988364 -99611419 + B1_Mus1 SINE Alu 1 148 0 6 1042 297 0 0 0 chr3 59988388 59988421 -99611362 + (TAAA)n Simple_repeat Simple_repeat 4 36 0 6 1042 378 286 0 0 chr3 59988536 59988627 -99611156 + B4 SINE B4 1 91 -201 6 1042 21 71 0 0 chr3 59988743 59988785 -99610998 + AT_rich Low_complexity Low_complexity 1 42 0 6 1042 258 344 0 0 chr3 59988801 59988865 -99610918 - ID4_ SINE ID -18 65 2 6 1042 456 296 0 17 chr3 59989253 59989370 -99610413 + MTEa LTR MaLR 252 366 -13 6 1042 222 242 16 8 chr3 59990825 59990950 -99608833 + GA-rich Low_complexity Low_complexity 2 127 0 6 1042 351 0 0 0 chr3 59990954 59990993 -99608790 + (CAGA)n Simple_repeat Simple_repeat 2 40 0 6 1042 592 354 123 9 chr3 59991628 59991945 -99607838 + LTR33A_ LTR ERVL 179 531 0 6 1042 550 344 43 0 chr3 59992348 59992511 -99607272 + B3 SINE B2 1 170 -46 6 1042 36 23 0 0 chr3 59992538 59992581 -99607202 + AT_rich Low_complexity Low_complexity 1 43 0 7 1042 31666 89 13 2 chr3 59993250 59998407 -99601376 + L1Md_F2 LINE L1 371 5585 -298 7 1042 7835 61 0 4 chr3 59998408 59999395 -99600388 + L1Md_F2 LINE L1 5587 6569 -13 7 1042 296 326 41 0 chr3 59999902 60000000 -99599783 + MLT1D LTR MaLR 10 111 -394 7 1042 23 0 0 0 chr3 60000335 60000358 -99599425 + AT_rich Low_complexity Low_complexity 1 23 0 1 1042 498 33 0 0 chr3 60000447 60000507 -99599276 + (TAG)n Simple_repeat Simple_repeat 3 62 0 2 1042 1044 66 0 0 chr3 60000509 60000646 -99599137 + (GGA)n Simple_repeat Simple_repeat 3 139 0 3 1042 348 322 104 10 chr3 60000737 60000938 -99598845 - MER34 LTR ERV1 -5 537 318 4 1042 3581 139 23 3 chr3 60001035 60001604 -99598179 + MT2B2 LTR ERVL 1 580 -4 5 1042 362 290 61 0 chr3 60001610 60001741 -99598042 - MER34 LTR ERV1 -386 156 18 4 1042 408 296 79 16 chr3 60002186 60002313 -99597470 + MLT1B LTR MaLR 37 171 -219 6 1042 426 20 0 0 chr3 60002530 60002581 -99597202 + (TA)n Simple_repeat Simple_repeat 2 52 0 7 1042 675 224 69 6 chr3 60002817 60002831 -99596952 - RLTR25A LTR ERVK -573 530 517 8 1042 189 0 0 0 chr3 60002831 60002852 -99596931 + (CAAA)n Simple_repeat Simple_repeat 4 24 0 9 1042 675 224 69 6 chr3 60002852 60003012 -99596771 - RLTR25A LTR ERVK -587 516 346 8 1042 709 147 244 0 chr3 60003012 60003212 -99596571 - Lx2 LINE L1 -32 6965 6765 1 1042 4278 157 9 0 chr3 60003207 60004172 -99595611 - Lx2 LINE L1 -875 6122 5151 1 1042 2188 107 15 47 chr3 60004183 60004324 -99595459 - MusHAL1 LINE L1 -281 3072 2933 1 1042 367 35 35 0 chr3 60004324 60004381 -99595402 + (TTG)n Simple_repeat Simple_repeat 2 60 0 1 1042 2188 107 15 47 chr3 60004381 60004642 -99595141 - MusHAL1 LINE L1 -421 2932 2683 1 1042 698 85 0 0 chr3 60004644 60004750 -99595033 - MusHAL1 LINE L1 -2958 396 291 1 1042 365 312 11 0 chr3 60004750 60004843 -99594940 - RLTR25B LTR ERVK -934 94 1 1 1042 207 0 0 0 chr3 60004950 60004973 -99594810 + (T)n Simple_repeat Simple_repeat 1 23 0 1 1042 1037 231 159 10 chr3 60005037 60005329 -99594454 + RLTR20B1 LTR ERVK 1 563 0 1 1042 238 385 55 22 chr3 60005329 60005483 -99594300 + MLT1J1 LTR MaLR 90 249 -195 1 1042 22 56 0 0 chr3 60007669 60007705 -99592078 + AT_rich Low_complexity Low_complexity 1 36 0 1 1042 272 248 147 26 chr3 60007838 60007954 -99591829 - L1MC LINE L1 -2174 3972 3843 1 1042 452 86 14 0 chr3 60008358 60008428 -99591355 + (TTTC)n Simple_repeat Simple_repeat 2 72 0 1 1042 3048 68 32 5 chr3 60008440 60008851 -99590932 - L1_Mus1 LINE L1 -1 6566 6145 2 1042 312 27 0 0 chr3 60009933 60009970 -99589813 + (TG)n Simple_repeat Simple_repeat 1 37 0 2 1042 1140 242 166 9 chr3 60010210 60010560 -99589223 + MTD LTR MaLR 1 405 -14 2 1042 248 329 0 12 chr3 60013047 60013127 -99586656 + ID4_ SINE ID 1 79 -4 2 1042 210 324 29 0 chr3 60013268 60013336 -99586447 + ID4_ SINE ID 11 80 -3 2 1042 261 0 0 0 chr3 60013842 60013871 -99585912 + (CA)n Simple_repeat Simple_repeat 1 29 0 2 1042 226 82 19 58 chr3 60014326 60014378 -99585405 + (TTTG)n Simple_repeat Simple_repeat 1 50 0 2 1042 15991 135 11 1 chr3 60014462 60017124 -99582659 + L1_Mm LINE L1 1766 4454 -1429 2 1042 512 252 0 0 chr3 60017126 60017233 -99582550 - L1_Mur3 LINE L1 -7586 126 20 2 1042 2314 289 92 66 chr3 60017266 60018722 -99581061 - L1_Mur3 LINE L1 -658 5222 3685 2 1042 1074 128 0 16 chr3 60018722 60018912 -99580871 - L1_Mus4 LINE L1 -1 6635 6449 3 1042 2314 289 92 66 chr3 60018912 60019382 -99580401 - L1_Mur3 LINE L1 -2196 3684 3246 2 1042 31 44 0 0 chr3 60019390 60019435 -99580348 + AT_rich Low_complexity Low_complexity 1 45 0 3 1042 800 295 87 23 chr3 60019843 60020496 -99579287 - L1_Mur3 LINE L1 -2619 3261 2567 2 1042 335 226 9 28 chr3 60020665 60020774 -99579009 - Lx9 LINE L1 -209 7435 7329 3 1042 235 307 43 21 chr3 60020834 60020974 -99578809 - L1_Rod LINE L1 -3290 2557 2415 3 1042 26 50 0 0 chr3 60020992 60021032 -99578751 + AT_rich Low_complexity Low_complexity 1 40 0 3 1042 744 252 29 12 chr3 60021164 60021405 -99578378 - L1_Mur3 LINE L1 -3509 2371 2127 2 1042 576 310 42 16 chr3 60021422 60021612 -99578171 + B3A SINE B2 1 195 -3 3 1042 429 298 42 42 chr3 60021796 60022150 -99577633 - L1M2 LINE L1 -3934 2615 2326 3 1042 315 0 0 0 chr3 60022156 60022191 -99577592 + (TAGA)n Simple_repeat Simple_repeat 4 38 0 3 1042 297 75 0 0 chr3 60022225 60022265 -99577518 + (TA)n Simple_repeat Simple_repeat 2 41 0 3 1042 180 0 0 0 chr3 60022296 60022316 -99577467 + (TA)n Simple_repeat Simple_repeat 2 21 0 3 1042 231 316 0 0 chr3 60022345 60022443 -99577340 - L1M2 LINE L1 -4470 2079 1982 3 1042 257 0 30 0 chr3 60022636 60022669 -99577114 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 3 1042 381 204 277 34 chr3 60023162 60023331 -99576452 + B3 SINE B2 7 216 0 4 1042 307 357 108 56 chr3 60023411 60023892 -99575891 - L1M5 LINE L1 -948 5198 4693 4 1042 214 194 28 0 chr3 60023941 60024013 -99575770 + CT-rich Low_complexity Low_complexity 1 74 0 4 1042 435 119 0 0 chr3 60024013 60024080 -99575703 + (TATG)n Simple_repeat Simple_repeat 3 69 0 4 1042 364 353 106 0 chr3 60024085 60024243 -99575540 - B3A SINE B2 -41 175 5 4 1042 25 0 0 0 chr3 60024315 60024340 -99575443 + AT_rich Low_complexity Low_complexity 1 25 0 4 1042 4800 94 8 1 chr3 60024540 60025208 -99574575 + L1_Mus3 LINE L1 5961 6632 -6 4 1042 217 254 14 27 chr3 60027674 60027747 -99572036 + (CAT)n Simple_repeat Simple_repeat 2 73 0 4 1042 354 367 72 0 chr3 60028623 60028762 -99571021 - B1F SINE Alu 0 149 1 4 1043 2787 233 27 50 chr3 60031705 60032364 -99567419 + Lx6 LINE L1 6813 7456 -4 4 1043 443 259 27 0 chr3 60032518 60032630 -99567153 - Lx7 LINE L1 -38 7658 7544 5 1043 9207 204 58 34 chr3 60032629 60035473 -99564310 - Lx7 LINE L1 -1086 6610 3695 5 1043 41108 4 0 0 chr3 60035468 60041817 -99557966 - L1Md_A LINE L1 -1 6581 232 5 1043 8251 197 105 20 chr3 60041883 60042375 -99557408 - Lx7 LINE L1 -2216 3664 3128 5 1043 239 0 0 31 chr3 60042375 60042407 -99557376 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 5 1043 8251 193 83 16 chr3 60042407 60044563 -99555220 - Lx7 LINE L1 -2753 3127 819 5 1043 27 73 0 0 chr3 60044969 60045024 -99554759 + AT_rich Low_complexity Low_complexity 1 55 0 5 1043 1025 201 0 14 chr3 60045456 60045663 -99554120 + Lx7 LINE L1 7493 7696 0 5 1043 8332 39 3 0 chr3 60046754 60048026 -99551757 - L1Md_F2 LINE L1 -3 6579 5300 5 1043 3984 51 0 4 chr3 60048520 60049013 -99550770 - L1Md_F2 LINE L1 -2 6580 6090 5 1043 1185 253 51 100 chr3 60049531 60050062 -99549721 - RLTR16 LTR ERVK 0 505 1 5 1043 3504 23 0 0 chr3 60050578 60050974 -99548809 + MTA_Mm LTR MaLR 1 396 0 5 1043 3333 170 65 18 chr3 60051478 60052136 -99547647 + RMER6C LTR ERVK 1 689 -1 5 1043 371 282 103 0 chr3 60052538 60052655 -99547128 + MER5A1 DNA MER1_type 3 131 -35 6 1043 745 239 32 54 chr3 60052661 60052847 -99546936 + B3A SINE B2 5 186 -12 6 1043 416 19 19 0 chr3 60053049 60053102 -99546681 + (TCTA)n Simple_repeat Simple_repeat 4 57 0 6 1043 603 67 0 0 chr3 60053158 60053247 -99546536 + (CA)n Simple_repeat Simple_repeat 2 90 0 6 1043 553 237 0 11 chr3 60053263 60053547 -99546236 + (TG)n Simple_repeat Simple_repeat 1 280 0 6 1043 311 278 0 6 chr3 60053560 60053737 -99546046 + (TG)n Simple_repeat Simple_repeat 1 176 0 6 1043 342 246 6 22 chr3 60053767 60053946 -99545837 + (TATG)n Simple_repeat Simple_repeat 4 179 0 6 1043 300 286 0 0 chr3 60053949 60054026 -99545757 + (TG)n Simple_repeat Simple_repeat 2 78 0 6 1043 377 252 0 14 chr3 60054033 60054174 -99545609 + (TATATG)n Simple_repeat Simple_repeat 2 140 0 6 1043 402 204 0 0 chr3 60054260 60054363 -99545420 + (TG)n Simple_repeat Simple_repeat 2 104 0 6 1043 556 301 25 25 chr3 60054386 60054543 -99545240 - RSINE1 SINE B4 -6 159 3 6 1043 32 57 0 0 chr3 60054772 60054825 -99544958 + AT_rich Low_complexity Low_complexity 1 53 0 7 1043 210 160 0 0 chr3 60057079 60057129 -99542654 + A-rich Low_complexity Low_complexity 3 52 0 7 1043 4556 201 69 15 chr3 60057774 60058770 -99541013 - Lx5 LINE L1 -1 7049 6000 7 1043 1686 21 0 0 chr3 60058770 60058962 -99540821 - B2_Mm1a SINE B2 0 193 2 7 1043 303 274 48 82 chr3 60058980 60059127 -99540656 + LTR40a LTR ERVL 1 142 -377 7 1043 284 95 53 13 chr3 60059185 60059260 -99540523 + A-rich Low_complexity Low_complexity 2 79 0 7 1043 634 331 35 60 chr3 60059263 60059578 -99540205 - ORR1E LTR MaLR -52 307 1 7 1043 298 260 0 14 chr3 60060353 60060427 -99539356 + MTEb LTR MaLR 294 366 -13 7 1043 280 306 55 18 chr3 60061263 60061373 -99538410 + LTR88b LTR Gypsy? 716 829 -8 7 1043 1858 240 24 17 chr3 60061735 60062151 -99537632 + MTD LTR MaLR 1 419 0 7 1043 431 161 0 65 chr3 60062370 60062463 -99537320 + MTC LTR MaLR 1 87 -334 8 1043 23 0 0 0 chr3 60062548 60062571 -99537212 + AT_rich Low_complexity Low_complexity 1 23 0 8 1043 1528 264 66 2 chr3 60062572 60062967 -99536816 + Lx6 LINE L1 6872 7291 -169 8 1043 203 0 37 0 chr3 60062970 60062997 -99536786 + (TGAA)n Simple_repeat Simple_repeat 1 28 0 8 1043 391 287 23 8 chr3 60063035 60063165 -99536618 + Lx7 LINE L1 7189 7320 -376 8 1043 25 0 0 0 chr3 60063359 60063384 -99536399 + AT_rich Low_complexity Low_complexity 1 25 0 8 1043 2055 172 5 33 chr3 60063384 60063805 -99535978 - RLTR9E LTR ERVK 0 409 1 8 1043 487 96 0 14 chr3 60063807 60063881 -99535902 - ETnERV2-int LTR ERVK -3 7403 7331 8 1043 4185 130 12 26 chr3 60064096 60064791 -99534992 - ETnERV2-int LTR ERVK -1184 6222 5772 8 1043 201 39 0 0 chr3 60064791 60064817 -99534966 + (TTG)n Simple_repeat Simple_repeat 2 27 0 8 1043 4185 84 0 7 chr3 60064817 60064924 -99534859 - ETnERV2-int LTR ERVK -1635 5771 5665 8 1043 372 311 73 42 chr3 60065032 60065223 -99534560 + B3A SINE B2 2 198 0 8 1043 263 352 37 0 chr3 60065413 60065521 -99534262 + MLT1G1 LTR MaLR 21 132 -447 8 1043 686 334 1 17 chr3 60065882 60066129 -99533654 + Lx8 LINE L1 6566 6835 -809 9 1043 243 337 36 0 chr3 60066314 60066397 -99533386 + Lx8 LINE L1 7155 7240 -233 9 1043 9920 103 6 8 chr3 60066390 60067566 -99532217 - L1_Mus3 LINE L1 -6 6632 5464 9 1043 4395 73 0 12 chr3 60067566 60068137 -99531646 - LTRIS2 LTR ERV1 0 564 1 9 1043 9920 138 15 16 chr3 60068137 60069394 -99530389 - L1_Mus3 LINE L1 -420 5463 4203 9 1043 384 324 98 9 chr3 60069398 60069622 -99530161 + Lx8 LINE L1 7225 7468 -5 9 1043 5217 63 3 3 chr3 60069648 60070321 -99529462 - L1Md_F2 LINE L1 -2 6580 5908 9 1043 336 179 0 0 chr3 60070969 60071047 -99528736 + (TG)n Simple_repeat Simple_repeat 2 79 0 9 1043 243 0 0 0 chr3 60071096 60071123 -99528660 + (TG)n Simple_repeat Simple_repeat 2 28 0 9 1043 216 231 125 100 chr3 60071150 60071270 -99528513 + L2c LINE L2 3264 3386 -1 9 1043 4318 62 0 40 chr3 60072572 60073155 -99526628 - L1Md_F2 LINE L1 -414 6168 5609 9 1043 3557 34 2 18 chr3 60073155 60073603 -99526180 + L1Md_F2 LINE L1 6142 6582 0 9 1043 517 301 150 16 chr3 60075177 60075430 -99524353 + MLT1A0 LTR MaLR 35 321 -44 9 1043 212 86 0 28 chr3 60075933 60075969 -99523814 + (CA)n Simple_repeat Simple_repeat 2 36 0 9 1043 1932 108 10 20 chr3 60075991 60076285 -99523498 - L1_Mus3 LINE L1 -13 6625 6335 9 1043 526 153 0 0 chr3 60076285 60076370 -99523413 + B1_Mus1 SINE Alu 8 92 -56 1 1043 396 0 0 0 chr3 60076370 60076414 -99523369 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 1043 3174 51 2 5 chr3 60076869 60077266 -99522517 - MTA_Mm LTR MaLR 0 396 1 1 1043 1104 256 153 6 chr3 60078930 60079295 -99520488 - MTD LTR MaLR 0 419 1 1 1043 686 247 20 34 chr3 60079312 60079506 -99520277 + B3 SINE B2 2 190 -5 1 1043 7686 60 17 0 chr3 60079894 60081012 -99518771 - L1Md_F2 LINE L1 0 6582 5446 1 1043 185 214 24 0 chr3 60081249 60081291 -99518492 + L2b LINE L2 3083 3125 -250 1 1043 28 29 0 0 chr3 60082605 60082640 -99517143 + AT_rich Low_complexity Low_complexity 1 35 0 1 1043 31 0 0 0 chr3 60083304 60083335 -99516448 + AT_rich Low_complexity Low_complexity 1 31 0 1 1043 24 0 0 0 chr3 60083629 60083653 -99516130 + AT_rich Low_complexity Low_complexity 1 24 0 1 1043 385 399 23 24 chr3 60083662 60083887 -99515896 + B4A SINE B4 70 292 0 1 1043 189 171 0 0 chr3 60083901 60083936 -99515847 + (CA)n Simple_repeat Simple_repeat 2 36 0 1 1043 1066 215 145 78 chr3 60084163 60084192 -99515591 + ORR1C2 LTR MaLR 3 31 -353 1 1043 1029 68 30 0 chr3 60084192 60084324 -99515459 + B1_Mm SINE Alu 2 137 -10 1 1043 1066 215 145 78 chr3 60084324 60084466 -99515317 + ORR1C2 LTR MaLR 32 174 -210 1 1043 468 0 0 0 chr3 60084466 60084518 -99515265 + (TC)n Simple_repeat Simple_repeat 1 52 0 1 1043 1066 215 145 78 chr3 60084518 60084703 -99515080 + ORR1C2 LTR MaLR 175 383 -1 1 1043 180 0 0 0 chr3 60085549 60085569 -99514214 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 1 1043 354 345 9 0 chr3 60085792 60085908 -99513875 - PB1D10 SINE Alu 0 117 1 1 1043 5538 219 33 45 chr3 60086715 60086936 -99512847 - Lx2B LINE L1 -1 6999 6788 1 1043 2883 44 0 6 chr3 60086936 60087298 -99512485 + L1Md_F2 LINE L1 6210 6569 -13 1 1043 5538 190 38 37 chr3 60087298 60088793 -99510990 - Lx2B LINE L1 -213 6787 5285 1 1043 2257 95 6 3 chr3 60088793 60089120 -99510663 - L1_Mus3 LINE L1 0 6638 6311 1 1043 1593 124 0 4 chr3 60089121 60089372 -99510411 + L1_Mm LINE L1 4538 4787 -1096 1 1043 1567 38 0 0 chr3 60089379 60089564 -99510219 - B2_Mm1t SINE B2 -7 186 2 1 1043 372 183 42 21 chr3 60089621 60089716 -99510067 - Lx2B LINE L1 -603 5274 5178 1 1043 2391 180 28 38 chr3 60091355 60091885 -99507898 - RLTR11A2 LTR ERVK 0 527 3 1 1043 3008 151 56 42 chr3 60091893 60092481 -99507302 + RMER17A-int LTR ERVK 1100 1695 -33 1 1043 1953 172 35 39 chr3 60092508 60093155 -99506628 + RMER17B LTR ERVK 1 813 -145 1 1043 2346 218 91 10 chr3 60093160 60093757 -99506026 - Lx9 LINE L1 -219 7425 6781 1 1043 513 71 0 0 chr3 60095027 60095097 -99504686 + (GAGAA)n Simple_repeat Simple_repeat 5 74 0 1 1043 3856 215 26 19 chr3 60095156 60096039 -99503744 + Lx2B LINE L1 6109 6997 -3 1 1043 486 310 76 6 chr3 60096423 60096595 -99503188 - MLT1C LTR MaLR -3 464 281 1 1043 707 255 130 0 chr3 60096777 60096977 -99502806 - MLT1C LTR MaLR -228 239 14 1 1043 26 30 0 0 chr3 60097957 60097990 -99501793 + AT_rich Low_complexity Low_complexity 1 33 0 1 1043 250 333 0 0 chr3 60098948 60099008 -99500775 - RSINE1 SINE B4 -24 141 82 1 1043 398 139 51 0 chr3 60099486 60099623 -99500160 + (TA)n Simple_repeat Simple_repeat 1 144 0 1 1043 292 247 10 49 chr3 60099675 60099777 -99500006 - L1M2 LINE L1 -658 5642 5545 1 1043 574 283 33 50 chr3 60100959 60101039 -99498744 - MTE2a LTR MaLR 0 379 303 1 1043 5919 143 104 5 chr3 60101039 60102053 -99497730 + RLTR13D3 LTR ERVK 1 1114 0 1 1043 574 283 33 50 chr3 60102053 60102154 -99497629 - MTE2a LTR MaLR -77 302 201 1 1043 1012 215 79 47 chr3 60102178 60102432 -99497351 - MT2B LTR ERVL -11 590 329 1 1043 1976 300 61 37 chr3 60102683 60103334 -99496449 + L1_Mur3 LINE L1 4030 4680 -1200 1 1043 756 289 5 0 chr3 60103334 60103535 -99496248 + B3 SINE B2 3 204 -12 1 1043 1976 300 61 37 chr3 60103535 60104207 -99495576 + L1_Mur3 LINE L1 4681 5385 -495 1 1043 360 0 0 0 chr3 60104277 60104317 -99495466 + (GA)n Simple_repeat Simple_repeat 1 40 0 1 1043 227 167 93 0 chr3 60104359 60104413 -99495370 - Lx5 LINE L1 -1288 5762 5704 1 1043 22 0 0 0 chr3 60104654 60104676 -99495107 + AT_rich Low_complexity Low_complexity 1 22 0 1 1043 314 311 0 0 chr3 60104710 60104816 -99494967 + L1M2 LINE L1 5646 5751 -549 1 1043 511 25 25 0 chr3 60104898 60104977 -99494806 - L1Md_F2 LINE L1 0 6582 6502 1 1043 192 152 0 0 chr3 60105038 60105071 -99494712 + (TAA)n Simple_repeat Simple_repeat 1 33 0 1 1043 486 183 114 9 chr3 60105774 60105879 -99493904 + B3 SINE B2 1 116 -100 1 1043 202 267 0 34 chr3 60105892 60105981 -99493802 + A-rich Low_complexity Low_complexity 6 91 0 1 1043 513 38 12 24 chr3 60106141 60106223 -99493560 + (TTTTG)n Simple_repeat Simple_repeat 2 82 0 1 1043 671 65 11 0 chr3 60106225 60106317 -99493466 - B1_Mus2 SINE Alu -12 135 43 1 1043 1908 75 8 8 chr3 60107063 60107331 -99492452 - L1Md_F2 LINE L1 -13 6569 6302 1 1043 465 336 7 0 chr3 60108040 60108180 -99491603 + B4A SINE B4 3 143 -149 1 1043 21 0 0 0 chr3 60108474 60108495 -99491288 + AT_rich Low_complexity Low_complexity 1 21 0 1 1043 2124 171 7 2 chr3 60110849 60111254 -99488529 - L1_Mm LINE L1 -1848 4035 3629 1 1043 3520 171 42 69 chr3 60111728 60112439 -99487344 + RLTR17 LTR ERVK 1 692 0 1 1043 297 229 152 30 chr3 60112693 60112792 -99486991 - Lx8 LINE L1 -123 7350 7240 1 1043 387 141 0 0 chr3 60112842 60112906 -99486877 + (A)n Simple_repeat Simple_repeat 1 64 0 1 1043 617 322 0 6 chr3 60112912 60113093 -99486690 - Lx8 LINE L1 -628 6845 6666 1 1043 576 309 11 55 chr3 60114047 60114321 -99485462 + Lx8 LINE L1 7212 7473 0 1 1043 359 295 146 10 chr3 60114419 60114611 -99485172 + MLT1C LTR MaLR 67 284 -183 1 1043 440 299 40 40 chr3 60114761 60114935 -99484848 - MLT1B LTR MaLR 0 390 217 1 1043 260 263 201 45 chr3 60115343 60115522 -99484261 + MLT1C LTR MaLR 362 568 -27 1 1043 313 350 36 14 chr3 60116139 60116362 -99483421 + L1MA5A LINE L1 5670 5897 -400 1 1043 23 33 0 0 chr3 60116569 60116599 -99483184 + AT_rich Low_complexity Low_complexity 1 30 0 1 1043 36767 64 19 1 chr3 60116755 60123107 -99476676 - L1Md_F2 LINE L1 -10 6572 98 1 1043 231 61 0 0 chr3 60123159 60123192 -99476591 + (CAGAGA)n Simple_repeat Simple_repeat 4 36 0 1 1043 236 362 101 0 chr3 60123271 60123409 -99476374 - MER63D DNA AcHobo -560 501 350 1 1043 2012 178 17 70 chr3 60124053 60124469 -99475314 - ORR1B1 LTR MaLR 0 394 1 1 1043 26 50 0 0 chr3 60126533 60126573 -99473210 + AT_rich Low_complexity Low_complexity 1 40 0 1 1043 513 0 0 0 chr3 60126654 60126711 -99473072 + (TG)n Simple_repeat Simple_repeat 2 58 0 1 1043 643 254 19 52 chr3 60126912 60127066 -99472717 - B4 SINE B4 -8 284 136 1 1043 1040 84 0 14 chr3 60127094 60127239 -99472544 - B1_Mus1 SINE Alu 0 148 6 1 1043 480 307 8 16 chr3 60127254 60127383 -99472400 - B4 SINE B4 -164 128 1 1 1043 309 324 125 27 chr3 60128437 60128621 -99471162 - MIRb SINE MIR -63 205 4 1 1043 527 246 161 0 chr3 60128827 60128945 -99470838 + B1_Mus1 SINE Alu 6 142 -6 1 1043 210 328 110 62 chr3 60128831 60128977 -99470806 + B4A SINE B4 94 246 -46 1 1043 234 0 0 0 chr3 60128984 60129010 -99470773 + (GGA)n Simple_repeat Simple_repeat 3 28 0 1 1043 1028 296 53 9 chr3 60129018 60129359 -99470424 - ORR1E LTR MaLR 0 359 4 1 1043 1229 20 7 0 chr3 60129901 60130049 -99469734 + (GGAGA)n Simple_repeat Simple_repeat 4 152 0 1 1043 515 326 76 25 chr3 60130056 60130371 -99469412 + L1MC4 LINE L1 6671 7001 -1041 1 1043 325 362 50 0 chr3 60130902 60131043 -99468740 - B1F SINE Alu -1 148 1 1 1043 2568 202 63 22 chr3 60131321 60131908 -99467875 + RMER19C LTR ERVK 1 611 0 1 1043 182 156 0 22 chr3 60131999 60132045 -99467738 + (TAGA)n Simple_repeat Simple_repeat 2 46 0 1 1043 24 0 0 0 chr3 60132160 60132184 -99467599 + AT_rich Low_complexity Low_complexity 1 24 0 1 1043 222 305 0 63 chr3 60132545 60132608 -99467175 + PB1D7 SINE Alu 20 78 -42 1 1043 445 268 24 18 chr3 60132748 60132913 -99466870 + L1Md_F LINE L1 552 818 -5801 1 1043 40 0 0 0 chr3 60134076 60134116 -99465667 + AT_rich Low_complexity Low_complexity 1 40 0 1 1043 231 333 0 14 chr3 60136593 60136666 -99463117 + ID4 SINE ID 1 72 -11 1 1043 2740 64 11 0 chr3 60136714 60137073 -99462710 + L1Md_F2 LINE L1 6219 6581 -1 1 1043 333 0 0 0 chr3 60137367 60137404 -99462379 + (TAAA)n Simple_repeat Simple_repeat 3 39 0 1 1043 484 172 0 0 chr3 60138036 60138123 -99461660 - MTE2a LTR MaLR 0 379 293 1 1043 3047 155 27 0 chr3 60139274 60139789 -99459994 - L1_Mm LINE L1 -322 5561 5033 1 1043 31091 68 8 4 chr3 60139796 60141914 -99457869 + L1Md_F2 LINE L1 1361 3476 -2407 1 1043 255 31 0 0 chr3 60141914 60141946 -99457837 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 1 1043 31091 68 8 4 chr3 60141946 60144037 -99455746 + L1Md_F2 LINE L1 3477 5587 -296 1 1043 7564 67 8 5 chr3 60144039 60145026 -99454757 + L1Md_F2 LINE L1 5591 6580 -2 1 1043 21 0 0 0 chr3 60145462 60145483 -99454300 + AT_rich Low_complexity Low_complexity 1 21 0 1 1043 232 347 0 85 chr3 60145483 60145565 -99454218 + ID4 SINE ID 5 79 -4 1 1043 609 277 93 22 chr3 60147047 60147343 -99452440 - MTE2a LTR MaLR -60 319 1 1 1043 1646 307 142 14 chr3 60147343 60148040 -99451743 - MTE2a-int LTR MaLR 0 1580 795 1 1043 489 321 0 15 chr3 60148078 60148214 -99451569 - MTE2a-int LTR MaLR -962 618 485 1 1043 1028 299 21 71 chr3 60148200 60148578 -99451205 - MTE2a-int LTR MaLR -1207 373 15 1 1043 390 42 0 0 chr3 60149124 60149172 -99450611 + (GAAA)n Simple_repeat Simple_repeat 3 50 0 1 1043 778 327 62 53 chr3 60149172 60149492 -99450291 - MTE2a LTR MaLR -54 325 3 1 1043 237 320 0 0 chr3 60150103 60150178 -99449605 + (TA)n Simple_repeat Simple_repeat 1 75 0 1 1043 2763 189 22 36 chr3 60150215 60150249 -99449534 - RMER15 LTR ERVL 0 575 542 1 1043 266 50 25 0 chr3 60150249 60150289 -99449494 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 1043 2763 189 22 36 chr3 60150289 60150837 -99448946 - RMER15 LTR ERVL -34 541 3 1 1043 514 323 32 0 chr3 60150938 60151096 -99448687 + RSINE1 SINE B4 1 163 -2 1 1043 1860 170 82 11 chr3 60151144 60151512 -99448271 + ORR1B1 LTR MaLR 1 394 0 1 1043 25 0 0 0 chr3 60151779 60151804 -99447979 + AT_rich Low_complexity Low_complexity 1 25 0 1 1043 854 280 21 29 chr3 60151920 60152199 -99447584 - Lx6 LINE L1 -4 7456 7180 1 1043 316 342 46 13 chr3 60152480 60152782 -99447001 + L1ME2 LINE L1 5643 5954 -210 2 1043 245 360 13 0 chr3 60153337 60153412 -99446371 + Charlie12 DNA MER1_type 7 82 -2791 2 1043 450 0 0 0 chr3 60154016 60154066 -99445717 + (TC)n Simple_repeat Simple_repeat 2 51 0 2 1043 216 0 0 0 chr3 60154066 60154089 -99445694 + (TG)n Simple_repeat Simple_repeat 1 24 0 2 1043 446 359 3 0 chr3 60154189 60154507 -99445276 + (TG)n Simple_repeat Simple_repeat 1 318 0 2 1043 297 0 0 0 chr3 60154507 60154540 -99445243 + (TA)n Simple_repeat Simple_repeat 2 34 0 2 1043 446 305 8 4 chr3 60154540 60154815 -99444968 + (TG)n Simple_repeat Simple_repeat 1 276 0 2 1043 200 34 0 33 chr3 60154894 60154924 -99444859 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 2 1043 744 321 5 0 chr3 60154926 60155119 -99444664 - B3 SINE B2 -22 194 1 2 1043 413 268 34 118 chr3 60155881 60156118 -99443665 + MLT1C-int LTR MaLR 1128 1344 -27 2 1043 405 286 132 55 chr3 60156178 60156582 -99443201 + MLT1C LTR MaLR 29 463 -4 2 1043 265 224 35 0 chr3 60157155 60157213 -99442570 + MLT1J LTR MaLR 73 132 -380 2 1043 1017 251 309 5 chr3 60157723 60158090 -99441693 + RMER15 LTR ERVL 27 512 -63 2 1043 261 0 0 0 chr3 60158090 60158119 -99441664 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2 1043 1017 251 309 5 chr3 60158119 60158155 -99441628 + RMER15 LTR ERVL 513 552 -23 2 1043 388 311 65 38 chr3 60158683 60158867 -99440916 + MIR SINE MIR 50 238 -24 2 1043 1725 265 50 31 chr3 60159297 60159786 -99439997 + RMER1A Other Other 1 456 -574 2 1043 1061 256 42 0 chr3 60159788 60160050 -99439733 + RMER1A Other Other 326 598 -432 2 1043 563 60 12 0 chr3 60160051 60160135 -99439648 + (TG)n Simple_repeat Simple_repeat 2 86 0 2 1043 236 183 38 101 chr3 60160136 60160215 -99439568 + RMER1A Other Other 911 984 -46 2 1043 205 177 48 0 chr3 60161183 60161245 -99438538 + (TA)n Simple_repeat Simple_repeat 1 65 0 2 130 714 343 95 54 chr3 60161675 60162140 -99437643 - MER77 LTR ERVL -3 604 121 2 1044 441 289 103 7 chr3 60162161 60162297 -99437486 + RSINE1 SINE B4 6 154 -11 2 1044 281 344 40 58 chr3 60162988 60163161 -99436622 - MER21-int LTR ERV1 -362 3829 3660 2 1044 368 289 78 99 chr3 60163221 60163372 -99436411 + B3 SINE B2 3 156 -39 2 1044 297 0 0 0 chr3 60163372 60163405 -99436378 + (CA)n Simple_repeat Simple_repeat 2 34 0 2 1044 324 289 78 99 chr3 60163405 60163445 -99436338 + B2_Mm2 SINE B2 157 190 -5 2 1044 788 321 104 27 chr3 60163816 60164190 -99435593 - MER21-int LTR ERV1 -1102 3089 2687 2 1044 546 326 136 30 chr3 60164363 60164701 -99435082 + MTEa LTR MaLR 5 378 -1 2 1044 468 0 0 0 chr3 60164947 60164999 -99434784 + (CA)n Simple_repeat Simple_repeat 2 53 0 2 1044 1381 251 30 79 chr3 60164999 60165537 -99434246 - RLTR20B3 LTR ERVK -109 468 7 2 1044 22 70 0 0 chr3 60166176 60166219 -99433564 + AT_rich Low_complexity Low_complexity 1 43 0 2 1044 520 164 4 28 chr3 60168879 60168997 -99430786 - L1_Mur3 LINE L1 -3975 1902 1792 2 1044 324 310 0 11 chr3 60169648 60169736 -99430047 + Lx8 LINE L1 7171 7257 -216 2 1044 425 346 117 15 chr3 60170122 60170294 -99429489 + Lx8 LINE L1 7165 7356 -117 2 1044 1932 193 11 14 chr3 60170294 60170662 -99429121 - ORR1B2 LTR MaLR 0 367 1 2 1044 425 346 117 15 chr3 60170662 60170762 -99429021 + Lx8 LINE L1 7357 7465 -8 2 1044 5467 37 0 0 chr3 60173016 60173666 -99426117 + L1Md_A LINE L1 5932 6581 -1 2 1044 219 103 0 0 chr3 60175149 60175188 -99424595 + (A)n Simple_repeat Simple_repeat 1 39 0 2 1044 645 186 25 8 chr3 60175236 60175355 -99424428 + B3 SINE B2 4 124 -92 2 1044 312 48 0 0 chr3 60175367 60175409 -99424374 + (T)n Simple_repeat Simple_repeat 1 42 0 2 1044 183 291 92 76 chr3 60177258 60177377 -99422406 - L3 LINE CR1 -1305 3184 3064 2 1044 566 279 119 27 chr3 60177552 60178023 -99421760 + L1M3 LINE L1 5254 5772 -408 2 1044 187 175 17 17 chr3 60178051 60178109 -99421674 + (TATG)n Simple_repeat Simple_repeat 2 59 0 2 1044 262 295 54 0 chr3 60178149 60178298 -99421485 + L1MB8 LINE L1 5815 5971 -207 2 1044 843 215 34 64 chr3 60178374 60178578 -99421205 - B3A SINE B2 0 198 1 2 1044 8439 22 0 0 chr3 60179057 60180670 -99419113 - L1Md_T LINE L1 0 6582 4970 2 1044 218 308 51 13 chr3 60180784 60180863 -99418920 + ID4 SINE ID 1 82 -1 2 1044 30 0 0 0 chr3 60181145 60181175 -99418608 + AT_rich Low_complexity Low_complexity 1 30 0 2 1044 395 263 69 35 chr3 60181277 60181450 -99418333 + L1MC LINE L1 5373 5551 -793 2 1044 564 311 57 0 chr3 60181830 60182007 -99417776 - MTEa-int LTR MaLR -28 1552 1366 2 1044 8461 113 42 23 chr3 60182087 60182109 -99417674 - Lx3A LINE L1 0 6981 6969 2 1044 513 0 0 0 chr3 60182109 60182166 -99417617 + (TCTA)n Simple_repeat Simple_repeat 2 58 0 2 1044 8461 109 56 20 chr3 60182166 60183790 -99415993 - Lx3A LINE L1 -13 6968 5298 2 1044 293 0 27 0 chr3 60183790 60183827 -99415956 + (TTTA)n Simple_repeat Simple_repeat 4 41 0 2 1044 4917 103 81 15 chr3 60183827 60184034 -99415749 - Lx3A LINE L1 -589 5297 5048 2 1044 4437 104 26 9 chr3 60184033 60184719 -99415064 + Lx3A LINE L1 4388 5085 -801 2 1044 800 284 12 48 chr3 60184724 60184972 -99414811 - MTEa-int LTR MaLR -1341 239 1 2 1044 477 221 72 85 chr3 60184972 60185125 -99414658 - MTEa LTR MaLR -2 377 227 2 1044 253 260 13 25 chr3 60185214 60185293 -99414490 - MTEa LTR MaLR -292 82 5 2 1044 1271 295 97 38 chr3 60185302 60186152 -99413631 + L1MC3 LINE L1 5673 6572 -1213 2 1044 201 297 33 11 chr3 60186155 60186247 -99413536 + (TATATG)n Simple_repeat Simple_repeat 3 96 0 2 1044 545 52 13 0 chr3 60186256 60186333 -99413450 + (TA)n Simple_repeat Simple_repeat 2 79 0 2 1044 227 287 22 54 chr3 60186401 60186493 -99413290 + L1MC3 LINE L1 6709 6797 -988 2 1044 404 316 95 17 chr3 60186489 60186837 -99412946 + L1MC3 LINE L1 6982 7356 -429 2 1044 28 29 0 0 chr3 60187212 60187247 -99412536 + AT_rich Low_complexity Low_complexity 1 35 0 2 1044 275 231 68 0 chr3 60187261 60187378 -99412405 - Lx9 LINE L1 0 7644 7520 2 1044 365 132 64 32 chr3 60187376 60187470 -99412313 - L1_Mur3 LINE L1 -2160 3720 3624 2 1044 727 239 35 18 chr3 60187800 60187970 -99411813 - Lx9 LINE L1 -448 7196 7024 2 1044 306 227 33 16 chr3 60188051 60188172 -99411611 + Lx9 LINE L1 7514 7636 -8 2 1044 378 0 0 0 chr3 60188173 60188215 -99411568 + (TA)n Simple_repeat Simple_repeat 1 42 0 2 1044 198 103 0 0 chr3 60188339 60188368 -99411415 + (GAA)n Simple_repeat Simple_repeat 2 30 0 2 1044 2613 167 6 24 chr3 60188368 60188877 -99410906 - L1_Mur3 LINE L1 -1850 4030 3531 2 1044 5378 224 59 9 chr3 60188867 60190037 -99409746 + Lx6 LINE L1 6223 7450 -10 2 1044 671 81 120 16 chr3 60190088 60190217 -99409566 + B1_Mus1 SINE Alu 1 148 -1 2 1044 396 0 0 0 chr3 60190919 60190963 -99408820 + (CA)n Simple_repeat Simple_repeat 2 45 0 2 1044 764 163 0 13 chr3 60191056 60191205 -99408578 + CT-rich Low_complexity Low_complexity 2 148 0 2 1044 3565 179 38 20 chr3 60191242 60191981 -99407802 + Lx4B LINE L1 6301 7052 -6 2 1044 582 28 0 0 chr3 60191999 60192071 -99407712 + (GA)n Simple_repeat Simple_repeat 1 72 0 2 1044 548 310 11 45 chr3 60193911 60194087 -99405696 + B4A SINE B4 43 212 -80 2 1044 303 51 66 33 chr3 60194127 60194188 -99405595 + (AGGGGG)n Simple_repeat Simple_repeat 1 63 0 2 1044 1180 276 145 12 chr3 60194194 60194612 -99405171 + RLTR20A2 LTR ERVK 5 478 -100 2 1044 573 28 0 0 chr3 60194612 60194683 -99405100 + (TG)n Simple_repeat Simple_repeat 2 72 0 2 1044 1180 276 145 12 chr3 60194683 60194760 -99405023 + RLTR20A2 LTR ERVK 479 565 -13 2 1044 314 295 93 54 chr3 60196463 60196592 -99403191 + RSINE1 SINE B4 3 136 -29 2 1044 239 71 24 0 chr3 60196730 60196772 -99403011 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 2 1044 751 250 10 39 chr3 60196780 60196984 -99402799 + MTD LTR MaLR 19 216 -203 2 1044 785 77 0 0 chr3 60196965 60197069 -99402714 + B1_Mm SINE Alu 38 141 -6 2 1044 232 250 73 97 chr3 60196967 60197091 -99402692 + B4A SINE B4 125 245 -47 2 1044 516 152 0 0 chr3 60197091 60197141 -99402642 + polypurine Low_complexity Low_complexity 2 51 0 2 1044 1536 22 0 0 chr3 60197141 60197321 -99402462 + (GGAGAA)n Simple_repeat Simple_repeat 1 180 0 2 1044 516 152 0 0 chr3 60197321 60197362 -99402421 + polypurine Low_complexity Low_complexity 52 92 0 2 1044 722 227 31 77 chr3 60197364 60197595 -99402188 + MTD LTR MaLR 181 419 0 2 1044 379 327 60 56 chr3 60198400 60198685 -99401098 + LTR81B LTR ERV1? 118 403 -990 2 1044 282 266 0 48 chr3 60198693 60198776 -99401007 + MTD LTR MaLR 2 80 -341 2 1044 899 137 42 0 chr3 60198776 60198944 -99400839 + Lx2 LINE L1 6823 6997 0 2 1044 26 0 0 0 chr3 60199045 60199071 -99400712 + AT_rich Low_complexity Low_complexity 1 26 0 2 1044 522 180 115 95 chr3 60199086 60199338 -99400445 - Lx9 LINE L1 0 7644 7388 2 1044 957 287 24 4 chr3 60199361 60199613 -99400170 + MTD LTR MaLR 108 364 -55 2 1044 301 120 58 0 chr3 60199682 60199743 -99400040 + MTD LTR MaLR 294 403 -16 2 1044 5181 62 11 4 chr3 60200263 60200957 -99398826 + L1Md_F2 LINE L1 5882 6580 -2 2 1044 698 50 33 8 chr3 60201724 60201844 -99397939 + (TAGA)n Simple_repeat Simple_repeat 1 123 0 2 1044 23 33 0 0 chr3 60202400 60202430 -99397353 + AT_rich Low_complexity Low_complexity 1 30 0 2 1044 202 229 0 0 chr3 60202611 60202659 -99397124 + A-rich Low_complexity Low_complexity 1 48 0 2 1044 1063 123 0 0 chr3 60202855 60203010 -99396773 + B2_Mm2 SINE B2 2 156 -39 2 1044 485 184 0 54 chr3 60203917 60204009 -99395774 - B1_Mur3 SINE Alu -13 136 50 2 1044 314 215 34 27 chr3 60207135 60207283 -99392500 + (TA)n Simple_repeat Simple_repeat 2 150 0 2 1044 1600 76 18 0 chr3 60207434 60207657 -99392126 - L1_Mus1 LINE L1 -3 6564 6338 2 1044 312 235 49 0 chr3 60208192 60208273 -99391510 - MER45A DNA Tip100 -11 167 83 2 1044 23 0 0 0 chr3 60208942 60208965 -99390818 + AT_rich Low_complexity Low_complexity 1 23 0 2 1044 24 0 0 0 chr3 60209208 60209232 -99390551 + AT_rich Low_complexity Low_complexity 1 24 0 2 1044 1232 184 76 8 chr3 60209232 60209468 -99390315 - Lx4A LINE L1 -1 7057 6806 2 1044 214 276 82 31 chr3 60210061 60210158 -99389625 - MER5A DNA MER1_type -49 140 39 2 1044 275 291 158 15 chr3 60210613 60210815 -99388968 - MIRb SINE MIR -6 262 32 2 1044 266 24 73 0 chr3 60210917 60210958 -99388825 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 2 1044 180 0 0 0 chr3 60211353 60211373 -99388410 + (TA)n Simple_repeat Simple_repeat 2 21 0 2 1044 414 0 0 0 chr3 60211373 60211418 -99388365 + (TG)n Simple_repeat Simple_repeat 1 46 0 2 1044 791 252 35 25 chr3 60211889 60212092 -99387691 - B3 SINE B2 -10 206 2 2 1044 207 0 0 0 chr3 60212773 60212796 -99386987 + (A)n Simple_repeat Simple_repeat 1 23 0 3 1044 30 0 0 0 chr3 60213663 60213693 -99386090 + AT_rich Low_complexity Low_complexity 1 30 0 3 1044 21 0 0 0 chr3 60214253 60214274 -99385509 + AT_rich Low_complexity Low_complexity 1 21 0 3 1044 886 88 143 0 chr3 60214708 60214855 -99384928 + URR1A DNA MER1_type 59 226 0 3 1044 1184 245 7 14 chr3 60216453 60216735 -99383048 - Lx6 LINE L1 -26 7434 7155 3 1044 1026 321 12 16 chr3 60216877 60217200 -99382583 - Lx5 LINE L1 -279 6771 6450 3 1044 1126 272 41 7 chr3 60217215 60217679 -99382104 + Lx5 LINE L1 6093 6793 -667 3 1044 269 206 349 38 chr3 60218007 60218018 -99381765 - B1_Mus2 SINE Alu 0 147 137 3 1044 231 61 0 0 chr3 60218018 60218051 -99381732 + (TTTTG)n Simple_repeat Simple_repeat 3 35 0 3 1044 281 173 203 66 chr3 60218051 60218145 -99381638 - PB1D9 SINE Alu -11 136 9 3 1044 1506 227 65 135 chr3 60218352 60218907 -99380876 + Lx7 LINE L1 6952 7467 -229 3 1044 6557 90 78 0 chr3 60218934 60220243 -99379540 + L1_Mus3 LINE L1 5222 6631 -7 3 1044 189 196 0 0 chr3 60220333 60220384 -99379399 + T-rich Low_complexity Low_complexity 4 54 0 3 1044 372 198 0 11 chr3 60220402 60220489 -99379294 + Lx6 LINE L1 7374 7459 -1 3 1044 25 31 0 0 chr3 60221915 60221947 -99377836 + AT_rich Low_complexity Low_complexity 1 32 0 3 1044 29 0 0 0 chr3 60222960 60222989 -99376794 + AT_rich Low_complexity Low_complexity 1 29 0 3 1044 709 307 141 19 chr3 60224486 60224755 -99375028 + MLT2D LTR ERVL 1 302 -112 3 1044 468 274 98 46 chr3 60225272 60225529 -99374254 + B4A SINE B4 14 286 -6 3 1044 347 281 29 23 chr3 60225545 60225720 -99374063 + (CATA)n Simple_repeat Simple_repeat 3 178 0 3 1044 649 180 148 0 chr3 60226681 60226809 -99372974 + B1_Mus1 SINE Alu 2 148 0 3 1044 366 80 0 0 chr3 60226813 60226863 -99372920 + (GGA)n Simple_repeat Simple_repeat 2 51 0 3 1044 230 322 48 32 chr3 60228720 60228845 -99370938 + MIRc SINE MIR 40 166 -102 3 1044 414 0 0 0 chr3 60228873 60228919 -99370864 + (TG)n Simple_repeat Simple_repeat 2 47 0 3 1044 421 354 8 0 chr3 60228920 60229047 -99370736 - B3A SINE B2 -69 129 2 3 1044 303 28 0 0 chr3 60229630 60229666 -99370117 + (GGA)n Simple_repeat Simple_repeat 3 38 0 3 1044 1245 96 0 0 chr3 60229666 60229844 -99369939 + (GAA)n Simple_repeat Simple_repeat 3 180 0 3 1044 25 51 0 0 chr3 60230408 60230447 -99369336 + AT_rich Low_complexity Low_complexity 1 39 0 3 1044 238 280 179 53 chr3 60231678 60231829 -99367954 - ORR1E LTR MaLR -169 190 21 3 1044 267 104 0 0 chr3 60232113 60232161 -99367622 + (A)n Simple_repeat Simple_repeat 1 48 0 3 1044 504 0 0 0 chr3 60232201 60232257 -99367526 + (TA)n Simple_repeat Simple_repeat 2 57 0 3 1044 360 0 0 0 chr3 60232259 60232299 -99367484 + (TG)n Simple_repeat Simple_repeat 2 41 0 3 1044 267 54 0 0 chr3 60232576 60232613 -99367170 + (TTTG)n Simple_repeat Simple_repeat 1 37 0 3 1044 3871 192 8 34 chr3 60232787 60233629 -99366154 - RMER1B Other Other 0 1066 1 3 1044 1888 259 156 25 chr3 60233697 60234298 -99365485 - Lx6 LINE L1 -23 7437 6758 3 1044 587 152 0 9 chr3 60234335 60234448 -99365335 + CT-rich Low_complexity Low_complexity 4 115 0 3 1044 408 71 0 0 chr3 60234444 60234500 -99365283 + (TCC)n Simple_repeat Simple_repeat 2 57 0 3 1044 41216 4 0 0 chr3 60234513 60241088 -99358695 - L1Md_A LINE L1 0 6582 7 3 1044 517 194 6 6 chr3 60241088 60241254 -99358529 + CT-rich Low_complexity Low_complexity 2 167 0 3 1044 758 282 5 25 chr3 60241262 60241510 -99358273 - Lx6 LINE L1 -725 6735 6275 3 1044 469 290 71 15 chr3 60242518 60242714 -99357069 + MER3 DNA MER1_type 1 207 -2 3 1044 320 344 103 37 chr3 60242873 60243145 -99356638 + B4A SINE B4 1 290 -2 3 1044 381 43 0 0 chr3 60243158 60243205 -99356578 + (CA)n Simple_repeat Simple_repeat 1 47 0 3 1044 797 101 7 0 chr3 60243624 60243763 -99356020 + (GA)n Simple_repeat Simple_repeat 1 140 0 3 1044 1371 70 16 0 chr3 60243797 60243982 -99355801 + B2_Mm1t SINE B2 1 188 -5 3 1044 1372 226 109 11 chr3 60244660 60245026 -99354757 - MTD LTR MaLR 0 419 18 3 1044 325 328 94 34 chr3 60245606 60245871 -99353912 - L1MEc LINE L1 -5113 1287 1007 3 1044 644 145 69 42 chr3 60246595 60246739 -99353044 + Lx3C LINE L1 6827 6974 -2 3 1044 957 133 0 0 chr3 60246747 60246905 -99352878 + (GAA)n Simple_repeat Simple_repeat 2 159 0 3 1044 768 193 7 40 chr3 60247324 60247475 -99352308 + B1_Mur3 SINE Alu 2 147 -2 3 1044 480 111 0 0 chr3 60247485 60247575 -99352208 + (TG)n Simple_repeat Simple_repeat 2 91 0 3 1044 1814 78 0 12 chr3 60248972 60249230 -99350553 - L1Md_F2 LINE L1 0 6582 6328 3 1044 281 348 42 30 chr3 60249272 60249438 -99350345 - MLT2B3 LTR ERVL 0 554 387 3 1044 32006 76 2 1 chr3 60249729 60254749 -99345034 + L1Md_F LINE L1 562 5586 -297 3 1044 7870 42 23 0 chr3 60254749 60255722 -99344061 + L1Md_F2 LINE L1 5587 6581 -1 3 1044 32006 80 2 1 chr3 60255722 60255735 -99344048 + L1Md_F LINE L1 5587 5601 -282 3 1044 1787 281 78 39 chr3 60255935 60256523 -99343260 - Lx6 LINE L1 -55 7405 6503 3 1044 213 132 0 0 chr3 60256690 60256728 -99343055 + (TTG)n Simple_repeat Simple_repeat 2 39 0 3 1044 727 276 116 14 chr3 60256784 60257124 -99342659 - Lx6 LINE L1 -651 6399 6007 3 1044 3567 192 43 9 chr3 60257116 60257904 -99341879 - L1_Mur2 LINE L1 -1691 4189 3375 3 1044 406 164 0 0 chr3 60257903 60257970 -99341813 + L1_Mur3 LINE L1 3487 3553 -2327 3 1044 1069 200 181 5 chr3 60257967 60258009 -99341774 - L1_Mur2 LINE L1 -4229 1651 1589 3 1044 492 18 0 0 chr3 60258009 60258066 -99341717 + (TG)n Simple_repeat Simple_repeat 2 58 0 3 1044 1086 222 103 26 chr3 60258066 60258777 -99341006 - L1_Mur2 LINE L1 -4292 1588 896 3 1044 21 0 0 0 chr3 60258864 60258885 -99340898 + AT_rich Low_complexity Low_complexity 1 21 0 3 1044 285 340 38 0 chr3 60259358 60259464 -99340319 + PB1D10 SINE Alu 1 110 -7 3 1044 603 197 20 53 chr3 60259914 60260064 -99339719 + URR1A DNA MER1_type 81 225 -1 3 1044 22 56 0 0 chr3 60260244 60260280 -99339503 + AT_rich Low_complexity Low_complexity 1 36 0 3 1044 360 0 0 0 chr3 60260824 60260864 -99338919 + (TG)n Simple_repeat Simple_repeat 1 40 0 3 1044 299 284 164 0 chr3 60261170 60261286 -99338497 + MLT1E3 LTR MaLR 7 141 -483 3 1044 2155 195 92 121 chr3 60261923 60262313 -99337470 + RMER19C LTR ERVK 1 331 -280 3 1044 4978 43 2 13 chr3 60262313 60262930 -99336853 - L1Md_F2 LINE L1 -12 6570 5961 3 1044 2155 195 92 121 chr3 60262930 60263168 -99336615 + RMER19C LTR ERVK 332 610 -1 3 1044 399 73 0 0 chr3 60264191 60264246 -99335537 + (TG)n Simple_repeat Simple_repeat 1 55 0 3 1044 216 172 0 0 chr3 60264251 60264309 -99335474 + (CAGAGA)n Simple_repeat Simple_repeat 3 60 0 3 1044 588 40 0 0 chr3 60264862 60264937 -99334846 + (CA)n Simple_repeat Simple_repeat 2 76 0 3 1044 233 167 61 0 chr3 60264939 60265005 -99334778 + (TA)n Simple_repeat Simple_repeat 2 71 0 3 1044 223 309 57 29 chr3 60265093 60265163 -99334620 - ID4 SINE ID -9 74 3 3 1044 21 36 0 0 chr3 60265267 60265295 -99334488 + AT_rich Low_complexity Low_complexity 1 28 0 3 1044 212 301 43 0 chr3 60265526 60265619 -99334164 + (CATATA)n Simple_repeat Simple_repeat 3 99 0 3 1044 31 58 0 0 chr3 60266727 60266779 -99333004 + AT_rich Low_complexity Low_complexity 1 52 0 3 1044 24 32 0 0 chr3 60266842 60266873 -99332910 + AT_rich Low_complexity Low_complexity 1 31 0 3 1044 272 285 20 47 chr3 60267411 60267609 -99332174 + Charlie5 DNA MER1_type 38 224 -2400 3 1044 36 23 0 0 chr3 60268981 60269024 -99330759 + AT_rich Low_complexity Low_complexity 1 43 0 3 1044 334 57 38 0 chr3 60269524 60269577 -99330206 + (TG)n Simple_repeat Simple_repeat 2 56 0 3 1044 600 331 43 27 chr3 60269647 60269905 -99329878 - B4A SINE B4 -30 262 1 3 1044 251 54 27 0 chr3 60270557 60270594 -99329189 + (TG)n Simple_repeat Simple_repeat 1 38 0 3 1044 29 47 0 0 chr3 60270649 60270692 -99329091 + AT_rich Low_complexity Low_complexity 1 43 0 3 1044 339 25 0 0 chr3 60270698 60270738 -99329045 + (TG)n Simple_repeat Simple_repeat 1 40 0 3 1044 228 234 73 59 chr3 60270784 60270852 -99328931 - B3 SINE B2 -108 108 40 3 1044 307 320 32 16 chr3 60270983 60271107 -99328676 + L1MC5 LINE L1 6734 6859 -1102 3 1044 711 264 127 25 chr3 60271698 60271935 -99327848 + B4A SINE B4 1 261 -31 3 1044 423 0 0 0 chr3 60273390 60273437 -99326346 + (TG)n Simple_repeat Simple_repeat 2 48 0 3 1044 865 280 148 9 chr3 60273437 60273884 -99325899 + L1MB4 LINE L1 5648 6156 -24 3 1044 1082 314 83 22 chr3 60274221 60274564 -99325219 - Tigger7 DNA MER2_type -2017 474 102 3 1044 2393 108 67 16 chr3 60274564 60274939 -99324844 - ORR1B1 LTR MaLR 0 394 1 3 1044 1082 314 83 22 chr3 60274939 60275041 -99324742 - Tigger7 DNA MER2_type -2390 101 2 3 1044 905 235 58 21 chr3 60275436 60275679 -99324104 - Lx9 LINE L1 -330 7314 7063 3 1044 640 208 277 0 chr3 60275676 60275924 -99323859 + Lx9 LINE L1 7305 7621 -23 3 1044 510 61 0 0 chr3 60279410 60279476 -99320307 + (TA)n Simple_repeat Simple_repeat 2 67 0 3 1044 605 114 9 0 chr3 60279510 60279615 -99320168 + (TTTC)n Simple_repeat Simple_repeat 3 108 0 3 1044 22 0 0 0 chr3 60279637 60279659 -99320124 + AT_rich Low_complexity Low_complexity 1 22 0 3 1044 252 86 0 0 chr3 60279989 60280024 -99319759 + (TCTG)n Simple_repeat Simple_repeat 4 38 0 3 1044 3855 69 8 4 chr3 60280139 60280646 -99319137 - L1Md_F2 LINE L1 -2 6580 6072 3 1044 330 62 0 0 chr3 60280646 60280694 -99319089 + L1VL1 LINE L1 203 250 -6172 3 1044 22 56 0 0 chr3 60280731 60280767 -99319016 + AT_rich Low_complexity Low_complexity 1 36 0 3 1044 216 0 0 0 chr3 60281305 60281329 -99318454 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 3 1044 235 324 15 0 chr3 60281330 60281398 -99318385 + B1F SINE Alu 74 142 -7 3 1044 21 0 0 0 chr3 60281401 60281422 -99318361 + AT_rich Low_complexity Low_complexity 1 21 0 3 1044 448 254 26 16 chr3 60281685 60281877 -99317906 - L1MA8 LINE L1 0 6291 6098 3 1044 235 262 71 0 chr3 60282053 60282137 -99317646 - L1MA4 LINE L1 -46 6254 6165 4 1044 327 59 14 68 chr3 60282233 60282306 -99317477 + (TTTTTG)n Simple_repeat Simple_repeat 4 72 0 4 1044 249 57 0 0 chr3 60282301 60282336 -99317447 + (TG)n Simple_repeat Simple_repeat 2 36 0 4 1044 404 329 40 26 chr3 60282684 60282912 -99316871 - L1MC4 LINE L1 -940 7102 6872 4 1044 198 0 0 0 chr3 60284122 60284144 -99315639 + (TTTTTG)n Simple_repeat Simple_repeat 2 23 0 4 1044 381 264 0 54 chr3 60284969 60285081 -99314702 - PB1D10 SINE Alu -3 114 9 4 1044 219 236 0 0 chr3 60285099 60285171 -99314612 + CT-rich Low_complexity Low_complexity 3 74 0 4 1044 205 195 0 0 chr3 60285194 60285235 -99314548 + T-rich Low_complexity Low_complexity 1 41 0 4 1044 1124 41 7 0 chr3 60285246 60285392 -99314391 - L1Md_A LINE L1 -4 6578 6432 4 1044 538 216 72 29 chr3 60285393 60285531 -99314252 - B1_Mm SINE Alu 0 147 4 4 1044 208 338 87 26 chr3 60286955 60287084 -99312699 - L2b LINE L2 -45 3381 3242 4 1044 21 0 0 0 chr3 60287668 60287689 -99312094 + AT_rich Low_complexity Low_complexity 1 21 0 4 1044 681 262 80 55 chr3 60288152 60288427 -99311356 + B4A SINE B4 3 284 -8 4 1044 672 56 0 0 chr3 60288476 60288565 -99311218 + (CA)n Simple_repeat Simple_repeat 1 89 0 4 1044 265 278 81 34 chr3 60289080 60289229 -99310554 - L1M2 LINE L1 -525 5775 5620 4 1044 480 248 8 16 chr3 60289323 60289450 -99310333 - L1M2 LINE L1 -739 5561 5436 4 1044 284 293 54 24 chr3 60289447 60289615 -99310168 + L1MA8 LINE L1 6119 6291 0 4 1044 401 0 0 20 chr3 60290811 60290861 -99308922 + (TG)n Simple_repeat Simple_repeat 1 49 0 4 1044 192 77 0 0 chr3 60291501 60291527 -99308256 + (TAA)n Simple_repeat Simple_repeat 2 27 0 4 1044 728 253 49 19 chr3 60291529 60291731 -99308052 + B3A SINE B2 1 203 -13 4 1044 217 233 0 0 chr3 60291731 60291774 -99308009 + (CA)n Simple_repeat Simple_repeat 1 43 0 4 1044 21 36 0 0 chr3 60292439 60292467 -99307316 + AT_rich Low_complexity Low_complexity 1 28 0 4 1045 474 18 0 0 chr3 60293211 60293266 -99306517 + (GGGA)n Simple_repeat Simple_repeat 3 57 0 4 1045 360 0 0 0 chr3 60293518 60293558 -99306225 + (CA)n Simple_repeat Simple_repeat 2 41 0 4 1045 2024 76 116 21 chr3 60293794 60294129 -99305654 - IAPLTR1_Mm LTR ERVK 0 367 1 4 1045 27516 22 1 1 chr3 60294133 60297401 -99302382 - IAPEz-int LTR ERVK -3 6478 3209 4 1045 6796 85 98 71 chr3 60297399 60298671 -99301112 - IAPEz-int LTR ERVK -5168 1313 8 4 1045 2024 76 116 21 chr3 60298671 60299006 -99300777 - IAPLTR1_Mm LTR ERVK 0 367 1 4 1045 780 297 20 95 chr3 60299271 60299309 -99300474 + B4A SINE B4 2 41 -251 4 1045 534 237 49 208 chr3 60299309 60299757 -99300026 + MTE2a LTR MaLR 1 377 -2 4 1045 780 297 20 95 chr3 60299757 60300023 -99299760 + B4A SINE B4 42 283 -9 4 1045 330 278 50 77 chr3 60300659 60300881 -99298902 + L2a LINE L2 3205 3420 -6 4 1045 25 95 0 0 chr3 60301234 60301308 -99298475 + AT_rich Low_complexity Low_complexity 1 74 0 4 1045 569 168 0 8 chr3 60302013 60302145 -99297638 + (TA)n Simple_repeat Simple_repeat 1 131 0 4 1045 193 316 35 123 chr3 60303438 60303512 -99296271 + L2c LINE L2 3000 3068 -307 4 1045 492 303 141 43 chr3 60303512 60303767 -99296016 - B4A SINE B4 -10 282 3 4 1045 260 325 45 91 chr3 60303767 60303908 -99295875 + L2c LINE L2 3069 3206 -181 4 1045 216 0 0 0 chr3 60304309 60304333 -99295450 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 4 1045 210 71 0 0 chr3 60305032 60305060 -99294723 + (CGGG)n Simple_repeat Simple_repeat 1 28 0 4 1045 402 21 0 0 chr3 60306108 60306155 -99293628 + (CA)n Simple_repeat Simple_repeat 2 48 0 4 1045 284 102 20 0 chr3 60307660 60307709 -99292074 + (TTG)n Simple_repeat Simple_repeat 2 51 0 4 1045 412 269 166 32 chr3 60307902 60308186 -99291597 + MER33 DNA MER1_type 3 324 0 4 1045 230 289 0 0 chr3 60309025 60309077 -99290706 + C-rich Low_complexity Low_complexity 1 52 0 4 1045 23 0 0 0 chr3 60309470 60309493 -99290290 + AT_rich Low_complexity Low_complexity 1 23 0 4 1045 1275 152 4 4 chr3 60311452 60311683 -99288100 - Lx LINE L1 -32 6622 6392 4 1045 330 361 19 25 chr3 60312019 60312181 -99287602 - MIR SINE MIR -79 183 23 4 1045 333 68 0 0 chr3 60312930 60312974 -99286809 + (CCA)n Simple_repeat Simple_repeat 1 44 0 4 1045 198 0 0 0 chr3 60313477 60313499 -99286284 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 4 1045 29 28 0 0 chr3 60313628 60313664 -99286119 + AT_rich Low_complexity Low_complexity 1 36 0 4 1045 518 264 153 36 chr3 60313715 60313963 -99285820 + B4A SINE B4 1 277 -15 4 1045 187 109 87 0 chr3 60315395 60315441 -99284342 + A-rich Low_complexity Low_complexity 2 51 0 4 1045 324 48 0 0 chr3 60316643 60316685 -99283098 + (TG)n Simple_repeat Simple_repeat 1 42 0 4 1045 446 142 173 0 chr3 60316693 60316820 -99282963 + Lx9 LINE L1 7495 7643 -1 4 1045 216 0 0 0 chr3 60317252 60317276 -99282507 + (A)n Simple_repeat Simple_repeat 1 24 0 4 1045 684 40 30 0 chr3 60317651 60317751 -99282032 + (CA)n Simple_repeat Simple_repeat 2 104 0 4 1045 213 333 0 0 chr3 60320372 60320444 -99279339 + ID4_ SINE ID 4 75 -8 4 1045 290 80 0 20 chr3 60320742 60320793 -99278990 + (TTTTG)n Simple_repeat Simple_repeat 2 51 0 4 1045 201 175 0 0 chr3 60321595 60321635 -99278148 + CT-rich Low_complexity Low_complexity 1 40 0 4 1045 243 0 0 0 chr3 60322116 60322143 -99277640 + (TA)n Simple_repeat Simple_repeat 2 28 0 4 1045 244 45 0 62 chr3 60322574 60322622 -99277161 + (TTTTG)n Simple_repeat Simple_repeat 2 46 0 4 1045 1304 127 24 75 chr3 60326853 60327108 -99272675 - Lx3C LINE L1 -2 6974 6733 4 1045 1584 27 21 0 chr3 60328364 60328551 -99271232 - B2_Mm1a SINE B2 -2 191 1 4 1045 253 284 0 0 chr3 60328560 60328641 -99271142 + T-rich Low_complexity Low_complexity 1 81 0 4 1045 606 28 0 0 chr3 60329041 60329113 -99270670 + (TCTCC)n Simple_repeat Simple_repeat 2 73 0 4 1045 288 120 0 0 chr3 60329129 60329179 -99270604 + (TCC)n Simple_repeat Simple_repeat 2 51 0 4 1045 373 304 35 18 chr3 60329186 60329300 -99270483 - B1_Mus1 SINE Alu -2 146 31 4 1045 248 333 11 45 chr3 60329221 60329309 -99270474 - MT2B LTR ERVL -338 263 179 4 1045 274 62 62 0 chr3 60330657 60330705 -99269078 + (TTTG)n Simple_repeat Simple_repeat 2 52 0 4 1045 192 274 112 31 chr3 60330999 60331097 -99268686 + MIRc SINE MIR 17 122 -146 4 1045 23 0 0 0 chr3 60331336 60331359 -99268424 + AT_rich Low_complexity Low_complexity 1 23 0 4 1045 216 0 0 0 chr3 60332454 60332478 -99267305 + (TG)n Simple_repeat Simple_repeat 1 24 0 4 1045 554 93 12 0 chr3 60332478 60332564 -99267219 + (GA)n Simple_repeat Simple_repeat 2 88 0 4 1045 411 119 0 0 chr3 60333427 60333494 -99266289 + (T)n Simple_repeat Simple_repeat 1 67 0 4 1045 210 71 0 0 chr3 60333969 60333997 -99265786 + (TTTTC)n Simple_repeat Simple_repeat 2 29 0 4 1045 213 94 0 0 chr3 60334211 60334243 -99265540 + (T)n Simple_repeat Simple_repeat 1 32 0 4 1045 300 27 0 0 chr3 60335700 60335737 -99264046 + (TG)n Simple_repeat Simple_repeat 2 38 0 4 1045 182 139 0 44 chr3 60337810 60337855 -99261928 + (TCTA)n Simple_repeat Simple_repeat 4 46 0 4 1045 21 0 0 0 chr3 60338906 60338927 -99260856 + AT_rich Low_complexity Low_complexity 1 21 0 4 1045 446 252 133 38 chr3 60339948 60340158 -99259625 - Lx9 LINE L1 -7 7637 7408 4 1045 444 175 38 0 chr3 60340156 60340236 -99259547 + Lx9 LINE L1 7339 7421 -223 4 1045 552 15 0 0 chr3 60341265 60341330 -99258453 + (TG)n Simple_repeat Simple_repeat 1 65 0 4 1045 732 61 0 0 chr3 60344275 60344373 -99255410 + (TC)n Simple_repeat Simple_repeat 2 99 0 4 1045 27 0 0 0 chr3 60348620 60348647 -99251136 + AT_rich Low_complexity Low_complexity 1 27 0 4 1045 198 0 0 0 chr3 60349594 60349616 -99250167 + (CA)n Simple_repeat Simple_repeat 2 23 0 4 1045 213 39 0 0 chr3 60352036 60352062 -99247721 + (TTA)n Simple_repeat Simple_repeat 2 27 0 4 1045 21 71 0 0 chr3 60353459 60353501 -99246282 + AT_rich Low_complexity Low_complexity 1 42 0 4 1045 423 276 66 71 chr3 60353838 60354064 -99245719 + MIRb SINE MIR 6 234 -34 4 1045 276 304 0 0 chr3 60354091 60354160 -99245623 - MIRc SINE MIR -158 110 42 4 1045 194 312 28 103 chr3 60354768 60354875 -99244908 + L2c LINE L2 3274 3372 -15 4 1045 332 335 71 50 chr3 60356696 60356878 -99242905 + MIR SINE MIR 4 189 -73 4 1045 25 0 0 0 chr3 60357985 60358010 -99241773 + AT_rich Low_complexity Low_complexity 1 25 0 4 1045 294 250 121 64 chr3 60358052 60358193 -99241590 + B1F2 SINE Alu 1 149 0 4 1045 25 0 0 0 chr3 60358394 60358419 -99241364 + AT_rich Low_complexity Low_complexity 1 25 0 4 1045 180 0 0 0 chr3 60360467 60360487 -99239296 + (TG)n Simple_repeat Simple_repeat 2 21 0 4 1045 320 269 120 7 chr3 60360491 60360633 -99239150 - Lx9 LINE L1 -232 7412 7255 4 1045 835 183 178 0 chr3 60363524 60363715 -99236068 + URR1B DNA MER1_type 1 225 0 4 1045 342 0 0 0 chr3 60364187 60364225 -99235558 + (TG)n Simple_repeat Simple_repeat 2 39 0 4 1045 250 347 98 16 chr3 60364510 60364633 -99235150 + MIRc SINE MIR 58 190 -78 4 1045 1061 175 78 0 chr3 60366119 60366325 -99233458 - URR1A DNA MER1_type 0 226 5 4 1045 249 33 0 0 chr3 60366714 60366744 -99233039 + (TG)n Simple_repeat Simple_repeat 1 30 0 4 1045 480 262 87 7 chr3 60366824 60366974 -99232809 - RSINE1 SINE B4 0 165 4 4 1045 297 0 0 0 chr3 60366988 60367021 -99232762 + (TG)n Simple_repeat Simple_repeat 2 34 0 4 1045 528 289 6 26 chr3 60367875 60368031 -99231752 + Lx8 LINE L1 7176 7328 -145 4 1045 183 42 0 0 chr3 60368187 60368211 -99231572 + (CAA)n Simple_repeat Simple_repeat 2 25 0 4 1045 363 290 18 94 chr3 60368298 60368469 -99231314 - MER20 DNA MER1_type -2 217 60 4 1045 318 158 17 17 chr3 60368564 60368622 -99231161 - HAL1-3A_ME LINE L1 -825 2033 1976 4 1045 239 282 14 0 chr3 60368634 60368705 -99231078 + (TG)n Simple_repeat Simple_repeat 1 72 0 4 1045 458 215 19 0 chr3 60369113 60369220 -99230563 - URR1B DNA MER1_type 0 225 117 5 1045 739 128 41 48 chr3 60369719 60369866 -99229917 + URR1A DNA MER1_type 76 221 -5 5 1045 249 83 0 0 chr3 60369925 60369961 -99229822 + (ATG)n Simple_repeat Simple_repeat 1 36 0 5 1045 288 0 0 0 chr3 60371614 60371646 -99228137 + (CA)n Simple_repeat Simple_repeat 1 32 0 5 1045 333 0 0 0 chr3 60371646 60371682 -99228101 + (GA)n Simple_repeat Simple_repeat 2 38 0 5 1045 606 81 69 20 chr3 60371702 60371803 -99227980 + B1_Mus2 SINE Alu 42 147 0 5 1045 23 33 0 0 chr3 60373020 60373050 -99226733 + AT_rich Low_complexity Low_complexity 1 30 0 5 1045 234 0 0 0 chr3 60375740 60375766 -99224017 + (TAGA)n Simple_repeat Simple_repeat 1 26 0 5 1045 216 111 0 0 chr3 60375994 60376030 -99223753 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 5 1045 491 197 0 16 chr3 60380146 60380275 -99219508 + GA-rich Low_complexity Low_complexity 2 128 0 5 1045 245 311 28 32 chr3 60382794 60382920 -99216863 - MIR SINE MIR -91 171 53 5 1045 309 283 138 57 chr3 60383917 60384164 -99215619 + RMER10A LTR ERVL 152 418 -24 5 1045 21 36 0 0 chr3 60385196 60385224 -99214559 + AT_rich Low_complexity Low_complexity 1 28 0 5 1045 272 203 31 0 chr3 60385319 60385383 -99214400 + RLTR42-int LTR ERVK 1542 1607 -3915 5 1045 257 219 14 0 chr3 60385395 60385468 -99214315 + (TA)n Simple_repeat Simple_repeat 2 75 0 5 1045 284 133 0 0 chr3 60385511 60385556 -99214227 + RLTR42-int LTR ERVK 1751 1795 -3727 5 1045 237 266 0 15 chr3 60387297 60387362 -99212421 + CT-rich Low_complexity Low_complexity 2 65 0 5 1045 403 218 62 26 chr3 60387639 60387752 -99212031 - B3A SINE B2 -80 118 2 5 1045 655 193 41 35 chr3 60387970 60388115 -99211668 - B1_Mus1 SINE Alu -1 147 2 5 1045 198 364 13 0 chr3 60388351 60388428 -99211355 - L2c LINE L2 -234 3153 3076 5 1045 230 318 15 0 chr3 60388823 60388889 -99210894 + MIRb SINE MIR 122 188 -80 5 1045 24 0 0 0 chr3 60392529 60392553 -99207230 + AT_rich Low_complexity Low_complexity 1 24 0 5 1045 543 101 0 0 chr3 60392939 60393018 -99206765 + (TA)n Simple_repeat Simple_repeat 1 79 0 5 1045 192 40 0 0 chr3 60393925 60393950 -99205833 + (TG)n Simple_repeat Simple_repeat 2 26 0 5 1045 189 195 0 0 chr3 60394553 60394594 -99205189 + CT-rich Low_complexity Low_complexity 4 44 0 5 1045 444 231 46 9 chr3 60394655 60394788 -99204995 + MLT1B LTR MaLR 236 388 -2 5 1045 258 263 48 56 chr3 60394857 60394982 -99204801 + MER20 DNA MER1_type 91 214 -5 5 1045 24 77 0 0 chr3 60395762 60395814 -99203969 + AT_rich Low_complexity Low_complexity 1 52 0 5 1045 678 238 0 95 chr3 60396718 60396876 -99202907 + RSINE1 SINE B4 3 145 -20 5 1045 751 165 138 18 chr3 60397227 60397394 -99202389 - URR1B DNA MER1_type -3 222 36 5 1045 331 225 38 29 chr3 60402409 60402514 -99197269 - MIRb SINE MIR -80 188 83 5 1045 296 353 11 17 chr3 60404065 60404281 -99195502 + (CATATA)n Simple_repeat Simple_repeat 1 214 0 5 1045 240 279 16 0 chr3 60404959 60405020 -99194763 - MER5B DNA MER1_type -27 151 90 5 1045 228 341 60 12 chr3 60405240 60405323 -99194460 - L2b LINE L2 -18 3357 3271 5 1045 228 174 43 0 chr3 60406819 60406865 -99192918 - MER20 DNA MER1_type -86 133 86 5 1045 516 207 0 0 chr3 60409422 60409543 -99190240 + (CA)n Simple_repeat Simple_repeat 2 122 0 5 1045 396 0 0 0 chr3 60411739 60411783 -99188000 + (TG)n Simple_repeat Simple_repeat 2 45 0 5 1045 25 0 0 0 chr3 60412012 60412037 -99187746 + AT_rich Low_complexity Low_complexity 1 25 0 5 1045 21 0 0 0 chr3 60412466 60412487 -99187296 + AT_rich Low_complexity Low_complexity 1 21 0 5 1045 37 39 0 0 chr3 60412615 60412666 -99187117 + AT_rich Low_complexity Low_complexity 1 51 0 5 1045 243 0 0 0 chr3 60412833 60412860 -99186923 + (ATTG)n Simple_repeat Simple_repeat 1 27 0 5 1045 379 264 0 110 chr3 60412861 60412997 -99186786 - B1_Mm SINE Alu -16 131 11 5 1045 1232 27 0 0 chr3 60415622 60415768 -99184015 + B1_Mus2 SINE Alu 2 147 0 5 1045 231 36 0 0 chr3 60415768 60415796 -99183987 + (A)n Simple_repeat Simple_repeat 1 28 0 5 1045 237 268 27 40 chr3 60416847 60416921 -99182862 - L1MC4 LINE L1 -673 7369 7297 5 1045 23 54 0 0 chr3 60418172 60418209 -99181574 + AT_rich Low_complexity Low_complexity 1 37 0 5 1045 328 68 0 48 chr3 60418722 60418784 -99180999 + (TTTTG)n Simple_repeat Simple_repeat 2 60 0 5 1045 25 31 0 0 chr3 60420482 60420514 -99179269 + AT_rich Low_complexity Low_complexity 1 32 0 5 1045 216 0 0 0 chr3 60421420 60421444 -99178339 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 5 1045 198 356 83 30 chr3 60421760 60421928 -99177855 - MIRb SINE MIR -6 262 86 5 1045 37 76 0 0 chr3 60422888 60422967 -99176816 + AT_rich Low_complexity Low_complexity 1 79 0 5 1045 22 56 0 0 chr3 60423185 60423221 -99176562 + AT_rich Low_complexity Low_complexity 1 36 0 5 1046 183 219 0 0 chr3 60424856 60424897 -99174886 + L2 LINE L2 697 737 -2682 5 1046 22 0 0 0 chr3 60425726 60425748 -99174035 + AT_rich Low_complexity Low_complexity 1 22 0 5 1046 205 304 0 18 chr3 60425836 60425893 -99173890 + CT-rich Low_complexity Low_complexity 2 57 0 5 1046 25 31 0 0 chr3 60426544 60426576 -99173207 + AT_rich Low_complexity Low_complexity 1 32 0 5 1046 257 151 19 0 chr3 60427718 60427771 -99172012 + (TA)n Simple_repeat Simple_repeat 2 55 0 5 1046 462 36 0 0 chr3 60428657 60428713 -99171070 + (TTA)n Simple_repeat Simple_repeat 1 56 0 5 1046 587 298 7 0 chr3 60429918 60430059 -99169724 + B1_Mur1 SINE Alu 2 143 -6 5 1046 203 103 26 0 chr3 60430177 60430216 -99169567 + (TG)n Simple_repeat Simple_repeat 1 40 0 5 1046 21 36 0 0 chr3 60430677 60430705 -99169078 + AT_rich Low_complexity Low_complexity 1 28 0 5 1046 21 0 0 0 chr3 60431568 60431589 -99168194 + AT_rich Low_complexity Low_complexity 1 21 0 5 1046 213 39 0 0 chr3 60433303 60433329 -99166454 + (A)n Simple_repeat Simple_repeat 1 26 0 5 1046 441 0 0 0 chr3 60433927 60433976 -99165807 + (TG)n Simple_repeat Simple_repeat 2 50 0 5 1046 360 0 0 0 chr3 60434165 60434205 -99165578 + (TG)n Simple_repeat Simple_repeat 1 40 0 5 1046 426 310 119 7 chr3 60434636 60434779 -99165004 - B3 SINE B2 -8 208 50 5 1046 5334 97 96 9 chr3 60435781 60436658 -99163125 - Lx3_Mus LINE L1 -4 7005 6053 5 1046 225 0 0 0 chr3 60436795 60436820 -99162963 + (A)n Simple_repeat Simple_repeat 1 25 0 5 1046 431 275 33 8 chr3 60436915 60437036 -99162747 + B4 SINE B4 2 125 -167 5 1046 241 208 13 13 chr3 60438341 60438419 -99161364 + (TA)n Simple_repeat Simple_repeat 1 78 0 5 1046 366 214 269 13 chr3 60438444 60438600 -99161183 - L1_Rod LINE L1 -3936 1911 1716 5 1046 786 251 70 0 chr3 60438671 60438858 -99160925 + ID_B1 SINE B4 24 223 -1 5 1046 253 293 50 66 chr3 60438891 60438941 -99160842 + L1_Rod LINE L1 1444 1487 -4393 5 1046 1345 50 16 37 chr3 60438941 60439129 -99160654 + B2_Mm2 SINE B2 3 186 -9 5 1046 294 264 99 26 chr3 60439129 60439362 -99160421 + L1_Rod LINE L1 1488 1739 -4108 5 1046 745 190 11 0 chr3 60439363 60439537 -99160246 + GA-rich Low_complexity Low_complexity 3 178 0 5 1046 1018 281 116 44 chr3 60439553 60439868 -99159915 + L1_Rod LINE L1 1716 2053 -3794 5 1046 5745 50 4 0 chr3 60439868 60440574 -99159209 + L1Md_F2 LINE L1 5862 6570 -12 5 1046 1018 281 116 44 chr3 60440574 60441051 -99158732 + L1_Rod LINE L1 2054 2565 -3282 5 1046 1701 303 50 19 chr3 60441051 60441876 -99157907 + Lx8 LINE L1 3403 4252 -1628 5 1046 929 212 24 19 chr3 60441931 60442138 -99157645 + B3 SINE B2 3 210 -6 5 1046 338 222 37 0 chr3 60442148 60442229 -99157554 + L1M3 LINE L1 4561 4644 -1496 5 1046 3321 303 73 30 chr3 60442897 60444175 -99155608 + Lx8 LINE L1 4709 6020 -1453 5 1046 1174 68 0 0 chr3 60444175 60444321 -99155462 + B1_Mus2 SINE Alu 1 146 -1 5 1046 3321 319 45 41 chr3 60444321 60444340 -99155443 + Lx8 LINE L1 6021 6036 -1437 5 1046 194 0 39 0 chr3 60444340 60444366 -99155417 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 5 1046 3321 319 45 41 chr3 60444366 60445620 -99154163 + Lx8 LINE L1 6037 7315 -158 5 1046 2171 167 0 0 chr3 60445678 60446038 -99153745 + Lx2 LINE L1 6633 6992 -5 5 1046 1230 260 131 13 chr3 60446217 60447004 -99152779 + Lx6 LINE L1 183 1062 -6666 5 1046 6669 225 51 57 chr3 60447003 60448807 -99150976 + Lx6 LINE L1 5664 7456 -4 5 1046 183 156 0 0 chr3 60448810 60448842 -99150941 + A-rich Low_complexity Low_complexity 1 32 0 5 1046 3850 181 21 15 chr3 60450011 60450762 -99149021 - RMER6A LTR ERVK 0 756 1 5 1046 699 197 166 0 chr3 60450886 60451079 -99148704 + URR1B DNA MER1_type 1 225 0 5 1046 431 350 53 29 chr3 60451102 60451308 -99148475 + MTD LTR MaLR 11 221 -198 5 1046 624 240 112 65 chr3 60451335 60451549 -99148234 + MTE2b LTR MaLR 154 377 -2 5 1046 23 33 0 0 chr3 60451976 60452006 -99147777 + AT_rich Low_complexity Low_complexity 1 30 0 5 1046 661 201 110 19 chr3 60452805 60452980 -99146803 + B2_Mm2 SINE B2 2 176 -17 5 1046 269 340 46 70 chr3 60453057 60453265 -99146518 - LTR16B2 LTR ERVL -87 375 187 5 1046 219 107 51 51 chr3 60453625 60453684 -99146099 + T-rich Low_complexity Low_complexity 2 60 0 5 1046 276 328 42 42 chr3 60454052 60454170 -99145613 + RSINE1 SINE B4 12 129 -36 5 1046 504 0 0 0 chr3 60454651 60454707 -99145076 + (TG)n Simple_repeat Simple_repeat 2 57 0 5 1046 440 342 20 20 chr3 60454858 60455007 -99144776 + MTD LTR MaLR 11 159 -260 5 1046 330 269 26 0 chr3 60455422 60455500 -99144283 + B3 SINE B2 134 213 -3 5 1046 453 36 0 0 chr3 60455592 60455647 -99144136 + (TC)n Simple_repeat Simple_repeat 2 56 0 5 1046 1518 268 34 17 chr3 60455733 60456208 -99143575 + Lx7 LINE L1 6818 7300 -396 5 1046 30 0 0 0 chr3 60456353 60456383 -99143400 + AT_rich Low_complexity Low_complexity 1 30 0 5 1046 579 300 52 150 chr3 60456383 60456783 -99143000 - MTD LTR MaLR -57 362 2 5 1046 249 184 51 29 chr3 60456898 60456966 -99142817 - B1F SINE Alu 0 149 56 5 1046 859 223 36 5 chr3 60459212 60459406 -99140377 + MTD LTR MaLR 206 405 -14 6 1046 1358 269 104 33 chr3 60459896 60460387 -99139396 + RMER5 LTR ERV1 9 534 0 6 1046 7296 82 10 1 chr3 60460514 60461604 -99138179 - L1_Mus3 LINE L1 -3 6635 5536 6 1046 270 0 0 0 chr3 60461728 60461758 -99138025 + (T)n Simple_repeat Simple_repeat 1 30 0 6 1046 414 0 0 0 chr3 60461877 60461923 -99137860 + (TC)n Simple_repeat Simple_repeat 2 47 0 6 1046 1034 306 55 3 chr3 60463578 60463926 -99135857 + ORR1D2 LTR MaLR 3 368 -2 6 1046 4461 121 44 6 chr3 60465134 60465855 -99133928 + L1VL4 LINE L1 191 939 -5363 6 1046 976 298 45 47 chr3 60466032 60466391 -99133392 - MTD LTR MaLR -1 418 61 6 1046 183 80 0 0 chr3 60468071 60468096 -99131687 + (T)n Simple_repeat Simple_repeat 1 25 0 6 1046 37948 23 1 8 chr3 60468365 60474553 -99125230 - L1Md_A LINE L1 -1 6581 440 6 1046 425 369 79 38 chr3 60474816 60475081 -99124702 + LTR52 LTR ERVL 9 284 -137 6 1046 405 0 0 0 chr3 60475209 60475254 -99124529 + (CA)n Simple_repeat Simple_repeat 2 46 0 6 1046 722 292 108 73 chr3 60475393 60475736 -99124047 - MT2A LTR ERVL 0 533 179 6 1046 279 0 0 0 chr3 60475736 60475767 -99124016 + (GGA)n Simple_repeat Simple_repeat 3 33 0 6 1046 346 237 53 0 chr3 60475840 60475916 -99123867 - MT2A LTR ERVL -442 91 12 6 1046 770 86 9 0 chr3 60475916 60476032 -99123751 + (TC)n Simple_repeat Simple_repeat 2 118 0 6 1046 418 61 30 0 chr3 60476042 60476108 -99123675 + (CA)n Simple_repeat Simple_repeat 2 69 0 6 1046 4373 116 33 51 chr3 60476210 60477034 -99122749 - RMER17D2 LTR ERVK 0 809 1 6 1046 24 0 0 0 chr3 60478773 60478797 -99120986 + AT_rich Low_complexity Low_complexity 1 24 0 6 1046 392 302 92 92 chr3 60478887 60479204 -99120579 + MLT1A LTR MaLR 50 366 -8 6 1046 1026 343 86 12 chr3 60479364 60479508 -99120275 + MLT2B3 LTR ERVL 161 308 -362 6 1046 708 12 0 0 chr3 60479508 60479589 -99120194 + (CAAAG)n Simple_repeat Simple_repeat 2 82 0 6 1046 1026 292 120 47 chr3 60479589 60479948 -99119835 + MLT2B3 LTR ERVL 309 698 -19 6 1046 247 25 0 48 chr3 60480300 60480342 -99119441 + (CAAA)n Simple_repeat Simple_repeat 2 41 0 6 1046 492 50 38 0 chr3 60480630 60480710 -99119073 + (TG)n Simple_repeat Simple_repeat 2 84 0 6 1046 349 318 119 20 chr3 60480712 60480863 -99118920 - B4A SINE B4 -42 250 85 6 1046 603 312 54 41 chr3 60480876 60481193 -99118590 - Lx8 LINE L1 -3 7470 7150 6 1046 420 20 0 0 chr3 60481196 60481245 -99118538 + (TGGA)n Simple_repeat Simple_repeat 3 51 0 6 1046 424 278 94 26 chr3 60481278 60481470 -99118313 - Lx8 LINE L1 -428 7045 6841 6 1046 281 247 12 12 chr3 60481477 60481563 -99118220 + Lx7 LINE L1 6994 7079 -617 6 1046 424 323 0 0 chr3 60481576 60481737 -99118046 + Lx7 LINE L1 7160 7320 -376 6 1046 750 53 0 0 chr3 60481787 60481882 -99117901 + (TG)n Simple_repeat Simple_repeat 2 96 0 6 1046 2866 43 3 0 chr3 60481991 60482343 -99117440 - MTA_Mm LTR MaLR -43 353 1 6 1046 713 199 78 13 chr3 60482343 60482494 -99117289 - BGLII_B LTR ERVK -280 161 1 6 1046 3661 216 40 42 chr3 60482518 60483431 -99116352 + Lx6 LINE L1 5823 6734 -726 6 1046 945 211 142 24 chr3 60483871 60484167 -99115616 - Lx9 LINE L1 -343 7301 6971 6 1046 778 267 43 58 chr3 60484186 60484666 -99115117 - L1_Mur3 LINE L1 -1450 4693 4205 6 1046 354 173 0 0 chr3 60485202 60485306 -99114477 + CT-rich Low_complexity Low_complexity 1 104 0 6 1046 393 109 0 0 chr3 60485306 60485370 -99114413 + (TG)n Simple_repeat Simple_repeat 1 64 0 6 1046 3231 21 2 40 chr3 60485592 60485995 -99113788 + RLTR10 LTR ERVK 1 388 -2 6 1046 1022 129 10 79 chr3 60485995 60486197 -99113586 + IAPEz-int LTR ERVK 6 193 -6288 6 1046 226 327 0 0 chr3 60486197 60486252 -99113531 + RLTR27 LTR ERVK 221 275 -34 6 1046 3358 65 1 16 chr3 60486252 60486830 -99112953 + IAPEz-int LTR ERVK 168 662 -5819 6 1046 2082 75 0 0 chr3 60486830 60487108 -99112675 + IAPEz-int LTR ERVK 1359 1636 -4845 6 1046 5680 46 4 19 chr3 60487107 60487864 -99111919 + IAPEz-int LTR ERVK 5736 6481 0 6 1046 2300 96 126 0 chr3 60487864 60488229 -99111554 + RLTR10 LTR ERVK 1 411 0 6 1046 249 196 0 0 chr3 60488306 60488362 -99111421 + (CA)n Simple_repeat Simple_repeat 1 56 0 6 1046 359 300 70 50 chr3 60488365 60488607 -99111176 + L1M2 LINE L1 4672 4918 -1225 6 1046 504 226 29 0 chr3 60489350 60489487 -99110296 + L1M2 LINE L1 5498 5638 -530 6 1046 2633 46 12 0 chr3 60489532 60489859 -99109924 - IAPEY_LTR LTR ERVK 0 385 55 6 1046 227 276 142 0 chr3 60489864 60489991 -99109792 + L1M2 LINE L1 5693 5837 -460 6 1046 878 120 17 28 chr3 60490380 60490560 -99109223 + G-rich Low_complexity Low_complexity 1 178 0 6 1046 23 54 0 0 chr3 60491042 60491079 -99108704 + AT_rich Low_complexity Low_complexity 1 37 0 6 1046 3107 81 0 14 chr3 60491874 60492287 -99107496 - MTB_Mm LTR MaLR 0 407 1 6 1046 500 298 5 78 chr3 60492311 60492504 -99107279 - B3A SINE B2 -17 181 3 6 1046 3605 182 38 22 chr3 60493741 60494439 -99105344 - RLTR33 LTR ERVK -19 659 1 6 1046 3453 35 0 0 chr3 60494476 60494872 -99104911 + MTA_Mm LTR MaLR 1 396 0 6 1046 8034 61 3 70 chr3 60494874 60496049 -99103734 + MTA_Mm-int LTR MaLR 3 1098 0 6 1046 3342 38 2 8 chr3 60496049 60496447 -99103336 + MTA_Mm LTR MaLR 1 396 0 6 1046 225 319 75 32 chr3 60496472 60496566 -99103217 + MER90a LTR ERV1 35 132 -482 6 1046 716 244 5 75 chr3 60496598 60496784 -99102999 - B3A SINE B2 -10 188 16 6 1046 207 0 0 0 chr3 60497214 60497237 -99102546 + (CAAAC)n Simple_repeat Simple_repeat 2 24 0 6 1046 1581 276 64 15 chr3 60497259 60497788 -99101995 - Lx7 LINE L1 -276 7420 6866 6 1046 288 0 0 0 chr3 60498460 60498492 -99101291 + (GA)n Simple_repeat Simple_repeat 1 32 0 6 1046 270 0 0 0 chr3 60499014 60499044 -99100739 + (A)n Simple_repeat Simple_repeat 1 30 0 6 1046 185 0 0 39 chr3 60499904 60499930 -99099853 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 6 1046 21 0 0 0 chr3 60500299 60500320 -99099463 + AT_rich Low_complexity Low_complexity 1 21 0 1 1046 240 91 22 43 chr3 60500565 60500611 -99099172 - L1Md_T LINE L1 -515 5368 5324 2 1046 1901 14 0 0 chr3 60500597 60500811 -99098972 + L1Md_T LINE L1 5373 5586 -297 2 1046 8944 5 1 0 chr3 60500811 60501843 -99097940 + L1Md_T LINE L1 5587 6582 0 2 1046 396 0 0 0 chr3 60502007 60502051 -99097732 + (CA)n Simple_repeat Simple_repeat 2 45 0 3 1046 269 318 83 121 chr3 60503698 60503938 -99095845 - MLT1J LTR MaLR -194 318 88 4 1046 21 0 0 0 chr3 60504508 60504529 -99095254 + AT_rich Low_complexity Low_complexity 1 21 0 5 1046 722 286 20 56 chr3 60504827 60505023 -99094760 + B3A SINE B2 10 198 0 6 1046 635 309 21 30 chr3 60506284 60506529 -99093254 + MTE2a LTR MaLR 18 220 -159 7 1046 3146 135 10 20 chr3 60507003 60507503 -99092280 - RLTR19 LTR ERVK -4 495 1 8 1046 7693 45 5 2 chr3 60507529 60508497 -99091286 - L1Md_F2 LINE L1 -4 6578 5641 9 1046 828 193 222 0 chr3 60508536 60508712 -99091071 + B3 SINE B2 1 215 -1 1 1046 389 226 47 12 chr3 60508977 60509062 -99090721 - PB1D10 SINE Alu -11 106 19 1 1046 569 173 22 38 chr3 60509242 60509411 -99090372 + RLTR31_Mm LTR ERVK 1 139 -418 1 1046 198 0 0 0 chr3 60509519 60509541 -99090242 + (TTTTG)n Simple_repeat Simple_repeat 4 25 0 1 1046 580 290 67 11 chr3 60509913 60510091 -99089692 + MLT1D LTR MaLR 275 462 -43 1 1046 879 132 0 0 chr3 60512181 60512401 -99087382 + (TA)n Simple_repeat Simple_repeat 1 220 0 1 1046 282 288 118 8 chr3 60513408 60513527 -99086256 + MER63D DNA AcHobo 134 265 -796 1 1046 6931 78 49 34 chr3 60513578 60514586 -99085197 + RLTR13D5 LTR ERVK 1 1023 0 1 1046 420 325 32 5 chr3 60515003 60515192 -99084591 + LTR55 LTR ERV 28 221 -327 1 1046 1106 284 15 58 chr3 60515197 60515593 -99084190 - MTE2a LTR MaLR 0 379 1 1 1046 237 308 50 17 chr3 60515758 60515877 -99083906 + LTR55 LTR ERV 418 540 -8 1 1046 325 367 28 0 chr3 60515943 60516052 -99083731 - PB1 SINE Alu -4 123 12 2 1046 1936 35 0 0 chr3 60516606 60516838 -99082945 - L1Md_A LINE L1 -3 6579 6348 2 1046 1382 256 44 22 chr3 60517792 60518155 -99081628 - MTE2b LTR MaLR -8 371 1 2 1046 516 311 80 19 chr3 60519426 60519639 -99080144 - MLT1E LTR MaLR -153 500 275 2 1046 22 0 0 0 chr3 60520096 60520118 -99079665 + AT_rich Low_complexity Low_complexity 1 22 0 2 1046 630 360 69 32 chr3 60520223 60520717 -99079066 - Lx8 LINE L1 -122 7351 6840 2 1046 677 341 58 7 chr3 60520764 60521056 -99078727 - Lx8 LINE L1 -738 6735 6429 2 1046 2011 131 184 32 chr3 60521228 60521859 -99077924 - Lx2A1 LINE L1 -450 6558 5832 2 1046 761 21 11 0 chr3 60521859 60521954 -99077829 + (TTTC)n Simple_repeat Simple_repeat 1 96 0 2 1046 479 172 0 82 chr3 60521962 60522158 -99077625 + CT-rich Low_complexity Low_complexity 1 180 0 2 1046 301 359 67 27 chr3 60522168 60522317 -99077466 - HAL1-3A_ME LINE L1 -419 2439 2285 2 1046 432 160 18 36 chr3 60522317 60522427 -99077356 + CT-rich Low_complexity Low_complexity 4 111 0 3 1046 1086 110 0 0 chr3 60522427 60522573 -99077210 - B1_Mus2 SINE Alu 0 147 2 3 1046 602 28 0 0 chr3 60522573 60522644 -99077139 - Lx2 LINE L1 -1155 5842 5772 3 1046 2720 121 43 0 chr3 60522644 60523066 -99076717 + Lx2A1 LINE L1 6565 7004 -4 3 1046 300 296 61 10 chr3 60523989 60524088 -99075695 - PB1D10 SINE Alu -8 109 6 3 1046 365 278 11 22 chr3 60524255 60524347 -99075436 + PB1D9 SINE Alu 3 93 -27 3 1046 189 0 0 0 chr3 60524349 60524370 -99075413 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 3 1046 1136 222 26 11 chr3 60524506 60524770 -99075013 - Lx9 LINE L1 -469 7175 6908 3 1046 974 90 53 0 chr3 60525235 60525368 -99074415 - B1_Mus1 SINE Alu -7 141 2 3 1046 513 0 0 0 chr3 60525414 60525471 -99074312 + (TA)n Simple_repeat Simple_repeat 2 58 0 3 1046 1703 260 67 38 chr3 60525857 60526353 -99073430 - RMER15 LTR ERVL -17 558 49 4 1046 272 220 17 0 chr3 60526429 60526488 -99073295 - RMER15 LTR ERVL -515 60 1 4 1046 206 229 14 28 chr3 60526520 60526592 -99073191 + (TA)n Simple_repeat Simple_repeat 2 72 0 4 1046 23 33 0 0 chr3 60526788 60526818 -99072965 + AT_rich Low_complexity Low_complexity 1 30 0 4 1046 650 239 14 0 chr3 60527089 60527231 -99072552 - B1_Mur1 SINE Alu 0 149 6 4 1046 21 0 0 0 chr3 60527310 60527331 -99072452 + AT_rich Low_complexity Low_complexity 1 21 0 4 1046 1774 174 88 32 chr3 60527439 60527812 -99071971 + ORR1B1 LTR MaLR 1 394 0 4 1046 917 194 124 0 chr3 60528193 60528394 -99071389 + URR1A DNA MER1_type 1 226 0 4 1046 226 291 119 8 chr3 60528746 60528864 -99070919 + MTEa LTR MaLR 226 356 -23 4 1046 823 324 93 33 chr3 60529331 60529816 -99069967 - MT2A LTR ERVL -3 530 17 4 1046 21 0 0 0 chr3 60529917 60529938 -99069845 + AT_rich Low_complexity Low_complexity 1 21 0 4 1046 24 67 0 0 chr3 60530148 60530193 -99069590 + AT_rich Low_complexity Low_complexity 1 45 0 5 1046 2591 64 0 3 chr3 60530290 60530619 -99069164 - L1_Mus1 LINE L1 0 6567 6240 5 1046 282 255 93 40 chr3 60530619 60530770 -99069013 - Lx8 LINE L1 -23 7450 7292 5 1046 395 298 23 55 chr3 60530774 60530902 -99068881 - RSINE1 SINE B4 -17 148 25 5 1046 478 301 180 30 chr3 60532109 60532743 -99067040 - L1M4 LINE L1 -1630 4516 3788 5 1046 318 239 35 41 chr3 60532740 60532910 -99066873 - Lx7 LINE L1 -171 7525 7357 5 1046 201 226 0 0 chr3 60532928 60532981 -99066802 + GA-rich Low_complexity Low_complexity 4 56 0 5 1046 2248 207 168 7 chr3 60532985 60533555 -99066228 - Lx7 LINE L1 -305 7391 6730 5 1046 189 0 0 0 chr3 60533555 60533576 -99066207 + (T)n Simple_repeat Simple_repeat 1 21 0 5 1046 420 270 141 17 chr3 60533823 60534000 -99065783 - L1M4 LINE L1 -2647 3499 3301 5 1046 189 107 0 0 chr3 60534203 60534231 -99065552 + (AGGTG)n Simple_repeat Simple_repeat 3 30 0 5 1046 273 189 0 19 chr3 60534486 60534540 -99065243 - PB1D10 SINE Alu 0 117 65 6 1046 228 279 14 42 chr3 60534487 60534558 -99065225 - ID_B1 SINE B4 0 224 156 6 1046 296 224 52 0 chr3 60534556 60534614 -99065169 - RSINE1 SINE B4 -38 127 67 6 1046 210 167 61 20 chr3 60534625 60534674 -99065109 - B1F SINE Alu -92 57 7 6 1046 476 251 75 50 chr3 60534755 60534994 -99064789 - L1MA5 LINE L1 -19 6281 6037 6 1046 978 254 14 18 chr3 60535367 60535584 -99064199 - B3 SINE B2 0 216 1 6 1046 351 44 0 0 chr3 60535649 60535694 -99064089 + (TG)n Simple_repeat Simple_repeat 1 45 0 6 1046 4418 154 18 15 chr3 60535716 60536509 -99063274 + RLTR22_Mur LTR ERVK 19 813 -1035 6 1046 531 264 72 67 chr3 60536795 60536990 -99062793 + RMER12 LTR ERVK 1127 1322 0 6 1046 387 0 0 0 chr3 60536990 60537033 -99062750 + (TG)n Simple_repeat Simple_repeat 2 44 0 6 1046 650 216 103 16 chr3 60537578 60537762 -99062021 - Lx9 LINE L1 -251 7393 7194 7 1046 382 165 191 0 chr3 60537767 60537882 -99061901 + Lx9 LINE L1 7399 7535 -109 7 1046 1092 111 0 0 chr3 60538161 60538341 -99061442 + (GA)n Simple_repeat Simple_repeat 1 180 0 7 1046 229 262 81 103 chr3 60539228 60539364 -99060419 - MER99 DNA hAT? -248 583 451 7 1046 492 18 0 0 chr3 60539439 60539496 -99060287 + (TG)n Simple_repeat Simple_repeat 1 57 0 7 1046 342 67 0 0 chr3 60539713 60539758 -99060025 + (CA)n Simple_repeat Simple_repeat 1 45 0 7 1046 1255 11 32 0 chr3 60539992 60540275 -99059508 + (CACAG)n Simple_repeat Simple_repeat 1 291 0 7 1046 531 128 0 0 chr3 60540586 60540672 -99059111 + (CA)n Simple_repeat Simple_repeat 2 87 0 7 1046 374 0 22 0 chr3 60540957 60541003 -99058780 + (CAAAAA)n Simple_repeat Simple_repeat 2 48 0 7 1046 360 0 0 0 chr3 60541978 60542018 -99057765 + (A)n Simple_repeat Simple_repeat 1 40 0 7 1046 331 231 108 27 chr3 60542040 60542151 -99057632 + RLTR23 LTR ERV1 311 430 0 7 1046 537 16 0 0 chr3 60542747 60542809 -99056974 + (CA)n Simple_repeat Simple_repeat 2 63 0 8 1046 5218 220 47 26 chr3 60542945 60544111 -99055672 + Lx6 LINE L1 6269 7459 -1 8 1046 369 0 0 0 chr3 60544185 60544226 -99055557 + (TA)n Simple_repeat Simple_repeat 1 41 0 8 1046 201 175 0 0 chr3 60544410 60544450 -99055333 + (TCTA)n Simple_repeat Simple_repeat 1 40 0 8 1046 480 308 46 40 chr3 60545400 60545684 -99054099 - MLT1A0 LTR MaLR -14 376 72 8 1046 419 125 0 14 chr3 60545684 60545757 -99054026 + (TCC)n Simple_repeat Simple_repeat 3 74 0 8 1046 2194 243 90 7 chr3 60545786 60546335 -99053448 - Lx5 LINE L1 -1 7049 6132 8 1046 458 294 109 100 chr3 60546374 60546832 -99052951 - RLTR12B LTR ERVK -25 503 42 8 1046 1864 282 37 8 chr3 60546855 60547345 -99052438 - Lx5 LINE L1 -561 6489 5986 8 1046 2128 208 69 40 chr3 60547364 60547872 -99051911 - RLTR21 LTR ERVK -3 1569 1065 8 1046 261 138 261 0 chr3 60547849 60547914 -99051869 - RLTR21 LTR ERVK -426 1146 1065 8 1046 244 286 11 56 chr3 60547883 60547972 -99051811 - RMER12B LTR ERVK -144 1260 1176 9 1046 219 69 0 0 chr3 60547991 60548020 -99051763 + (CA)n Simple_repeat Simple_repeat 2 30 0 9 1046 6691 161 41 18 chr3 60548034 60548980 -99050803 - RLTR21 LTR ERVK -317 1255 281 9 1046 2350 88 25 0 chr3 60548980 60549299 -99050484 - ORR1A2 LTR MaLR 0 327 1 9 1046 6691 161 41 18 chr3 60549299 60549579 -99050204 - RLTR21 LTR ERVK -1292 280 1 9 1046 4250 155 106 9 chr3 60549585 60550555 -99049228 - Lx5 LINE L1 -1073 5977 4865 8 1046 626 220 28 1 chr3 60550557 60550724 -99049059 + L1_Mur2 LINE L1 3808 4014 -2126 9 1046 315 272 123 45 chr3 60551082 60551236 -99048547 + RLTR23 LTR ERV1 265 430 0 9 1046 2533 199 83 170 chr3 60551242 60551371 -99048412 - RLTR25A LTR ERVK -111 992 889 9 1046 612 119 0 0 chr3 60551371 60551480 -99048303 + (TG)n Simple_repeat Simple_repeat 2 110 0 9 1046 2533 199 83 170 chr3 60551480 60552437 -99047346 - RLTR25A LTR ERVK -215 888 1 9 1046 1474 184 38 6 chr3 60552437 60552754 -99047029 - Lx5 LINE L1 -1235 4642 4316 8 1046 2322 121 57 44 chr3 60553005 60553412 -99046371 - MT2C_Mm LTR ERVL 0 475 64 9 1046 1005 262 35 33 chr3 60553412 60553746 -99046037 - Lx7 LINE L1 -397 7299 6966 9 1046 2730 160 58 19 chr3 60553891 60554610 -99045173 + RLTR31_Mm LTR ERVK 1 681 -11 1 1046 1948 201 50 3 chr3 60554744 60555123 -99044660 - MTB_Mm LTR MaLR -8 399 3 1 1047 401 256 191 87 chr3 60556198 60556429 -99043354 + RLTR42-int LTR ERVK 1537 1791 -3731 1 1047 217 240 0 20 chr3 60556895 60556946 -99042837 + CT-rich Low_complexity Low_complexity 1 50 0 1 1047 3213 188 91 54 chr3 60557044 60557254 -99042529 - L1_Mur3 LINE L1 -3624 2256 2066 1 1047 414 0 0 0 chr3 60557254 60557300 -99042483 + (TG)n Simple_repeat Simple_repeat 2 47 0 1 1047 3213 188 91 54 chr3 60557300 60557348 -99042435 - L1_Mur3 LINE L1 -3815 2065 2041 1 1047 1391 40 0 11 chr3 60557348 60557527 -99042256 + (TTTC)n Simple_repeat Simple_repeat 4 180 0 1 1047 3213 187 62 30 chr3 60557527 60558668 -99041115 - L1_Mur3 LINE L1 -3840 2040 861 1 1047 293 235 12 0 chr3 60558695 60558776 -99041007 - L1_Mur3 LINE L1 -7440 288 207 1 1047 25 51 0 0 chr3 60559366 60559405 -99040378 + AT_rich Low_complexity Low_complexity 1 39 0 1 1047 24 32 0 0 chr3 60559562 60559593 -99040190 + AT_rich Low_complexity Low_complexity 1 31 0 1 1047 666 282 86 16 chr3 60561216 60561461 -99038322 - RMER5 LTR ERV1 0 534 273 1 1047 359 289 79 0 chr3 60561551 60561665 -99038118 - RMER5 LTR ERV1 -397 137 15 1 1047 873 296 95 26 chr3 60561916 60562305 -99037478 + Lx7 LINE L1 6885 7300 -396 1 1047 255 122 21 118 chr3 60562316 60562409 -99037374 + T-rich Low_complexity Low_complexity 4 87 0 1 1047 372 169 0 0 chr3 60562409 60562486 -99037297 + GA-rich Low_complexity Low_complexity 2 78 0 1 1047 251 247 88 49 chr3 60562734 60562836 -99036947 + B4A SINE B4 144 249 -43 1 1047 534 103 0 0 chr3 60562857 60562935 -99036848 + (CA)n Simple_repeat Simple_repeat 2 79 0 1 1047 180 0 0 0 chr3 60564140 60564160 -99035623 + (CAA)n Simple_repeat Simple_repeat 1 20 0 1 1047 291 290 142 19 chr3 60564211 60564527 -99035256 + L1_Rod LINE L1 2074 2428 -3419 1 1047 2630 185 34 41 chr3 60564592 60565248 -99034535 - RLTR31_Mm LTR ERVK 0 561 3 1 1047 443 280 61 50 chr3 60565254 60565551 -99034232 + Lx7 LINE L1 5601 5900 -1796 1 1047 279 213 0 0 chr3 60565561 60565636 -99034147 + (TG)n Simple_repeat Simple_repeat 1 75 0 1 1047 456 67 0 0 chr3 60566727 60566787 -99032996 + (TA)n Simple_repeat Simple_repeat 2 61 0 1 1047 314 305 0 0 chr3 60568217 60568299 -99031484 + ID4 SINE ID 2 83 0 1 1047 326 260 76 9 chr3 60568801 60568906 -99030877 + PB1D10 SINE Alu 5 116 -1 1 1047 249 108 0 0 chr3 60568906 60568943 -99030840 + (CAGA)n Simple_repeat Simple_repeat 1 37 0 1 1047 508 267 119 29 chr3 60568961 60569273 -99030510 + L1M2 LINE L1 4956 5295 -848 1 1047 297 330 63 4 chr3 60569383 60569620 -99030163 + L1M2 LINE L1 5377 5627 -664 1 1047 464 200 7 0 chr3 60569634 60569784 -99029999 + (CA)n Simple_repeat Simple_repeat 2 152 0 1 1047 301 170 19 0 chr3 60569786 60569839 -99029944 + HAL1-3A_ME LINE L1 1975 2028 -830 1 1047 292 287 74 11 chr3 60569956 60570051 -99029732 + Lx8 LINE L1 6196 6296 -1177 1 1047 1676 244 96 30 chr3 60570175 60570800 -99028983 - RMER13A LTR ERVK -25 835 130 1 1047 2730 185 72 2 chr3 60570840 60571397 -99028386 + MERVK26-int LTR ERVK 3454 4049 -2870 1 1047 229 271 156 7 chr3 60571413 60571554 -99028229 + Lx8 LINE L1 7302 7463 -10 1 1047 1546 270 171 22 chr3 60571859 60572548 -99027235 - Lx6 LINE L1 -2 7458 6667 1 1047 611 68 23 0 chr3 60573259 60573347 -99026436 + (TTCC)n Simple_repeat Simple_repeat 4 93 0 1 1047 879 91 7 20 chr3 60573347 60573493 -99026290 + (TCCC)n Simple_repeat Simple_repeat 2 145 0 1 1047 345 161 0 165 chr3 60575120 60575217 -99024566 + RSINE1 SINE B4 85 165 0 1 1047 207 139 0 0 chr3 60575280 60575316 -99024467 + (CA)n Simple_repeat Simple_repeat 1 36 0 1 1047 240 333 13 13 chr3 60575368 60575447 -99024336 + ID2 SINE ID 4 82 -1 1 1047 791 273 14 0 chr3 60575535 60575744 -99024039 + B3 SINE B2 2 213 -3 1 1047 181 339 47 55 chr3 60577194 60577322 -99022461 - MER5A DNA MER1_type -31 158 32 1 1047 1394 237 74 44 chr3 60577484 60577917 -99021866 + Lx8 LINE L1 7026 7471 -2 1 1047 216 67 0 0 chr3 60578356 60578386 -99021397 + (A)n Simple_repeat Simple_repeat 1 30 0 1 1047 5654 62 1 1 chr3 60579702 60580415 -99019368 + L1Md_F2 LINE L1 5857 6569 -13 1 1047 207 0 0 0 chr3 60580442 60580465 -99019318 + (A)n Simple_repeat Simple_repeat 1 23 0 1 1047 189 0 0 0 chr3 60580465 60580486 -99019297 + (GA)n Simple_repeat Simple_repeat 2 22 0 1 1047 551 168 7 58 chr3 60580501 60580640 -99019143 + L1_Mur3 LINE L1 4381 4512 -1368 1 1047 4732 256 72 8 chr3 60580641 60581965 -99017818 + Lx6 LINE L1 5884 7291 -169 1 1047 275 85 21 0 chr3 60581972 60582019 -99017764 + (TGAA)n Simple_repeat Simple_repeat 1 48 0 1 1047 238 269 25 13 chr3 60582079 60582158 -99017625 + Lx7 LINE L1 7207 7286 -410 1 1047 28 61 0 0 chr3 60582397 60582446 -99017337 + AT_rich Low_complexity Low_complexity 1 49 0 1 1047 23 0 0 0 chr3 60582994 60583017 -99016766 + AT_rich Low_complexity Low_complexity 1 23 0 1 1047 912 311 88 15 chr3 60583029 60583371 -99016412 - MTEa LTR MaLR -12 367 1 1 1047 360 0 0 0 chr3 60584595 60584635 -99015148 + (CA)n Simple_repeat Simple_repeat 1 40 0 1 1047 370 237 134 0 chr3 60584826 60584923 -99014860 - RSINE1 SINE B4 -36 129 20 1 1047 607 249 33 30 chr3 60585529 60585820 -99013963 + L1MC5 LINE L1 6616 6985 -1057 1 1047 29 28 0 0 chr3 60585868 60585904 -99013879 + AT_rich Low_complexity Low_complexity 1 36 0 1 1047 4344 206 53 84 chr3 60585998 60587441 -99012342 - Lx2 LINE L1 -3 6994 5597 1 1047 360 0 0 0 chr3 60587971 60588011 -99011772 + (CA)n Simple_repeat Simple_repeat 2 41 0 1 1047 238 339 17 35 chr3 60588195 60588369 -99011414 + GA-rich Low_complexity Low_complexity 4 174 0 1 1047 751 302 27 34 chr3 60590396 60590807 -99008976 - L1MA8 LINE L1 -30 6261 5854 1 1047 1728 228 42 13 chr3 60590899 60591282 -99008501 - MTD LTR MaLR -14 405 12 1 1047 244 78 39 19 chr3 60591284 60591336 -99008447 + (CAAAA)n Simple_repeat Simple_repeat 2 54 0 1 1047 1037 208 9 19 chr3 60591560 60591776 -99008007 + URR1B DNA MER1_type 12 225 0 1 1047 243 0 0 0 chr3 60593247 60593274 -99006509 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 1 1047 29 0 0 0 chr3 60593407 60593436 -99006347 + AT_rich Low_complexity Low_complexity 1 29 0 1 1047 1432 292 103 11 chr3 60594051 60594594 -99005189 + RCHARR1 DNA MER1_type 3 595 -379 1 1047 594 79 0 0 chr3 60594600 60594689 -99005094 + (TG)n Simple_repeat Simple_repeat 1 89 0 1 1047 306 330 30 20 chr3 60594784 60594883 -99004900 - MT2A LTR ERVL -137 396 297 1 1047 1180 296 42 28 chr3 60595111 60595511 -99004272 + RCHARR1 DNA MER1_type 569 974 0 1 1047 339 25 0 0 chr3 60596545 60596585 -99003198 + (TG)n Simple_repeat Simple_repeat 1 40 0 1 1047 387 0 0 0 chr3 60596673 60596716 -99003067 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 1047 207 313 24 0 chr3 60596720 60596803 -99002980 + (TATATG)n Simple_repeat Simple_repeat 1 85 0 1 1047 504 0 0 0 chr3 60597609 60597665 -99002118 + (GTTTG)n Simple_repeat Simple_repeat 2 57 0 1 1047 334 250 0 24 chr3 60597748 60597830 -99001953 - PB1 SINE Alu -5 122 43 1 1047 236 281 47 0 chr3 60597980 60598044 -99001739 - L2b LINE L2 0 3375 3309 1 1047 22 0 0 0 chr3 60598633 60598655 -99001128 + AT_rich Low_complexity Low_complexity 1 22 0 1 1047 1870 216 39 20 chr3 60598722 60599129 -99000654 + MTC LTR MaLR 7 421 0 1 1047 278 311 89 0 chr3 60599254 60599344 -99000439 + RSINE1 SINE B4 35 132 -33 1 1047 234 0 0 0 chr3 60599353 60599379 -99000404 + (CA)n Simple_repeat Simple_repeat 2 27 0 1 1047 430 280 73 47 chr3 60599379 60599640 -99000143 + MTEb LTR MaLR 101 372 -7 1 1047 25 0 0 0 chr3 60600194 60600219 -98999564 + AT_rich Low_complexity Low_complexity 1 25 0 1 1047 802 223 48 34 chr3 60604240 60604449 -98995334 + B3 SINE B2 5 216 0 1 1047 217 390 8 0 chr3 60605170 60605288 -98994495 + CT-rich Low_complexity Low_complexity 2 120 0 1 1047 272 273 4 0 chr3 60605288 60605385 -98994398 - ID4 SINE ID -54 98 1 1 1047 468 315 68 59 chr3 60605537 60605891 -98993892 - ORR1E LTR MaLR 0 359 3 1 1047 2017 87 0 0 chr3 60605911 60606188 -98993595 - L1Md_F2 LINE L1 -474 6108 5832 1 1047 3616 69 0 30 chr3 60606188 60606680 -98993103 + L1Md_F2 LINE L1 6095 6571 -11 1 1047 401 339 45 30 chr3 60609091 60609289 -98990494 + MIRb SINE MIR 36 236 -32 1 1047 1413 51 0 0 chr3 60609345 60609523 -98990260 + (CA)n Simple_repeat Simple_repeat 1 178 0 1 1047 1163 195 114 4 chr3 60611202 60611475 -98988308 - Lx5 LINE L1 0 7050 6748 1 1047 1793 238 97 0 chr3 60611562 60612078 -98987705 - Lx9 LINE L1 -8 7636 7071 1 1047 1821 88 11 15 chr3 60612856 60613122 -98986661 - L1Md_F2 LINE L1 -3 6579 6315 1 1047 2790 69 0 16 chr3 60613234 60613617 -98986166 + L1Md_F2 LINE L1 6205 6581 -1 1 1047 26 0 0 0 chr3 60615221 60615247 -98984536 + AT_rich Low_complexity Low_complexity 1 26 0 1 1047 210 37 0 0 chr3 60616967 60616994 -98982789 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 1047 282 217 0 0 chr3 60617454 60617523 -98982260 + CT-rich Low_complexity Low_complexity 4 72 0 1 1047 6812 69 6 0 chr3 60617949 60618831 -98980952 - RLTR13B1 LTR ERVK -6 887 1 1 1047 479 342 85 11 chr3 60619765 60620037 -98979746 - Lx8 LINE L1 -228 7245 6954 1 1047 324 0 0 0 chr3 60620278 60620314 -98979469 + (TC)n Simple_repeat Simple_repeat 1 36 0 1 1047 312 188 0 0 chr3 60620728 60620792 -98978991 + GA-rich Low_complexity Low_complexity 3 66 0 1 1047 2598 196 45 48 chr3 60620877 60621457 -98978326 + RLTR20A2 LTR ERVK 1 578 0 1 1047 233 382 55 22 chr3 60622676 60622767 -98977016 + MER45C DNA Tip100 152 245 -708 1 1047 348 418 70 84 chr3 60622835 60623193 -98976590 + MER45C DNA Tip100 344 696 -257 1 1047 441 95 0 0 chr3 60624370 60624433 -98975350 + (CA)n Simple_repeat Simple_repeat 2 64 0 1 1047 1113 126 112 29 chr3 60624525 60624730 -98975053 + URR1A DNA MER1_type 5 226 0 1 1047 244 354 10 40 chr3 60624900 60625000 -98974783 + MIRb SINE MIR 151 247 -21 2 1047 510 17 0 0 chr3 60625218 60625277 -98974506 + (TC)n Simple_repeat Simple_repeat 2 60 0 2 1047 285 29 0 0 chr3 60625277 60625310 -98974473 + (TG)n Simple_repeat Simple_repeat 1 34 0 2 1047 991 224 157 21 chr3 60625559 60625834 -98973949 - MTD LTR MaLR 0 419 106 2 1047 5725 65 26 11 chr3 60625834 60626621 -98973162 + RLTR13C2 LTR ERVK 1 953 -5 2 1047 379 288 0 43 chr3 60626628 60626744 -98973039 - MTD LTR MaLR -307 112 2 2 1047 725 311 66 101 chr3 60626749 60627096 -98972687 - Tigger7 DNA MER2_type -2060 431 97 2 1047 333 0 0 0 chr3 60627197 60627234 -98972549 + (GA)n Simple_repeat Simple_repeat 1 37 0 2 1047 1489 220 51 44 chr3 60627635 60628048 -98971735 + RMER1B Other Other 495 910 -156 2 1047 231 36 0 0 chr3 60631453 60631481 -98968302 + (TG)n Simple_repeat Simple_repeat 1 28 0 2 1047 909 140 0 0 chr3 60631482 60631632 -98968151 + (TA)n Simple_repeat Simple_repeat 2 151 0 2 1047 368 197 28 0 chr3 60632109 60632180 -98967603 + MTC LTR MaLR 7 79 -342 2 1047 2407 126 86 2 chr3 60632188 60632585 -98967198 - RLTR23 LTR ERV1 0 430 1 2 1047 1464 183 64 72 chr3 60632593 60632640 -98967143 - RMER10B LTR ERVL -10 388 347 2 1047 5602 34 9 0 chr3 60632640 60633296 -98966487 + L1Md_T LINE L1 5920 6581 -1 2 1047 1464 183 64 72 chr3 60633296 60633395 -98966388 - RMER10B LTR ERVL -52 346 258 2 1047 426 39 0 0 chr3 60633395 60633447 -98966336 + (GAAA)n Simple_repeat Simple_repeat 1 52 0 2 1047 1437 40 0 0 chr3 60633449 60633625 -98966158 + (GGAA)n Simple_repeat Simple_repeat 3 178 0 2 1047 1464 183 64 72 chr3 60633625 60633863 -98965920 - RMER10B LTR ERVL -141 257 7 2 1047 1245 216 91 56 chr3 60633861 60634200 -98965583 + MTC LTR MaLR 71 421 0 2 1047 1334 122 292 0 chr3 60634709 60634962 -98964821 - ORR1A2 LTR MaLR 0 327 1 2 1047 21 0 0 0 chr3 60635067 60635088 -98964695 + AT_rich Low_complexity Low_complexity 1 21 0 2 1047 245 411 35 21 chr3 60635371 60635515 -98964268 + ORR1E LTR MaLR 1 146 -213 2 1047 1715 176 156 25 chr3 60636258 60636694 -98963089 + RLTR16 LTR ERVK 1 493 -12 2 1047 27 29 0 0 chr3 60636728 60636762 -98963021 + AT_rich Low_complexity Low_complexity 1 34 0 2 1047 24 67 0 0 chr3 60636837 60636882 -98962901 + AT_rich Low_complexity Low_complexity 1 45 0 2 1047 1892 312 66 16 chr3 60637206 60638070 -98961713 + Lx9 LINE L1 6496 7402 -242 2 1047 30 0 0 0 chr3 60638237 60638267 -98961516 + AT_rich Low_complexity Low_complexity 1 30 0 2 1047 7863 39 0 2 chr3 60638437 60639768 -98960015 - L1Md_F2 LINE L1 -1 6581 5254 2 1047 4015 122 27 6 chr3 60639760 60640393 -98959390 - Lx LINE L1 -138 6516 5871 2 1047 948 83 0 7 chr3 60640391 60640536 -98959247 - L1VL4 LINE L1 -1697 1862 1719 2 1047 5040 69 38 3 chr3 60640540 60640805 -98958978 - L1VL4 LINE L1 -2527 1032 767 2 1047 2654 89 39 13 chr3 60640805 60641191 -98958592 + MTA_Mm LTR MaLR 1 396 0 2 1047 5040 93 22 10 chr3 60641191 60641734 -98958049 - L1VL4 LINE L1 -5536 766 207 2 1047 198 71 0 0 chr3 60641740 60641768 -98958015 + (TTTTTG)n Simple_repeat Simple_repeat 2 29 0 2 1047 1133 93 41 6 chr3 60641771 60641943 -98957840 - B2_Mm2 SINE B2 0 195 18 2 1047 283 263 133 3 chr3 60641989 60642091 -98957692 - MTE2a LTR MaLR -51 370 240 2 1047 397 301 64 0 chr3 60642118 60642274 -98957509 + L1M4 LINE L1 5417 5582 -602 2 1047 456 51 0 0 chr3 60642404 60642463 -98957320 + (CA)n Simple_repeat Simple_repeat 1 59 0 2 1047 819 321 32 2 chr3 60642694 60643100 -98956683 - L1M2 LINE L1 -889 5254 4837 2 1047 438 254 21 63 chr3 60643168 60643407 -98956376 - L1M2 LINE L1 -1441 4702 4474 2 1047 386 279 110 55 chr3 60643411 60643764 -98956019 + L1MA6 LINE L1 5841 6216 -84 2 1047 441 95 0 0 chr3 60643764 60643827 -98955956 + (TA)n Simple_repeat Simple_repeat 1 63 0 2 1047 386 279 110 55 chr3 60643827 60643909 -98955874 + L1MA6 LINE L1 6217 6300 0 2 1047 23 33 0 0 chr3 60644054 60644084 -98955699 + AT_rich Low_complexity Low_complexity 1 30 0 2 1047 759 320 76 48 chr3 60645409 60645763 -98954020 - MTD LTR MaLR -54 365 2 2 1047 207 0 0 0 chr3 60646398 60646421 -98953362 + (CA)n Simple_repeat Simple_repeat 1 23 0 2 1047 387 204 106 19 chr3 60646423 60646583 -98953200 + Lx9 LINE L1 7439 7612 -32 2 1047 185 149 43 0 chr3 60646613 60646660 -98953123 + A-rich Low_complexity Low_complexity 2 50 0 2 1047 2723 47 0 0 chr3 60647245 60647583 -98952200 + ORR1A1 LTR MaLR 1 338 -8 2 1047 443 310 39 49 chr3 60650179 60650412 -98949371 - B4A SINE B4 -2 290 83 2 1047 792 293 101 79 chr3 60651031 60651079 -98948704 + MLT1B LTR MaLR 11 45 -345 2 1047 695 173 111 44 chr3 60651079 60651260 -98948523 + B2_Mm2 SINE B2 3 195 0 2 1047 792 293 101 79 chr3 60651260 60651578 -98948205 + MLT1B LTR MaLR 46 385 -5 2 1047 597 142 0 0 chr3 60651619 60651732 -98948051 + (TCTA)n Simple_repeat Simple_repeat 1 113 0 2 1047 199 289 0 0 chr3 60652179 60652231 -98947552 - MIR SINE MIR -27 235 184 2 1047 681 265 105 4 chr3 60653012 60653282 -98946501 + L1_Mur3 LINE L1 3712 4038 -2105 2 1047 389 301 70 58 chr3 60653365 60653696 -98946087 + L1_Mur3 LINE L1 4145 4494 -1649 2 1047 1824 199 66 8 chr3 60653696 60654092 -98945691 + MTD LTR MaLR 1 419 0 2 1047 389 302 74 63 chr3 60654092 60654371 -98945412 + L1_Mur3 LINE L1 4492 4758 -1382 2 1047 3878 40 0 2 chr3 60654763 60655240 -98944543 - MT2_Mm LTR ERVL 0 493 18 2 1047 24 0 0 0 chr3 60655384 60655408 -98944375 + AT_rich Low_complexity Low_complexity 1 24 0 2 1047 201 232 58 0 chr3 60657536 60657605 -98942178 + GA-rich Low_complexity Low_complexity 5 77 0 2 1047 217 343 73 15 chr3 60657894 60658030 -98941753 + MIRb SINE MIR 1 144 -124 2 1047 377 134 70 242 chr3 60658838 60658927 -98940856 - B3A SINE B2 -92 106 36 2 1047 1168 48 7 7 chr3 60658927 60659073 -98940710 - B1_Mus2 SINE Alu 0 147 2 2 1047 377 134 70 242 chr3 60659073 60659111 -98940672 - B3A SINE B2 -163 35 1 2 1047 189 0 0 0 chr3 60659120 60659141 -98940642 + (T)n Simple_repeat Simple_repeat 1 21 0 2 1047 258 333 47 68 chr3 60659762 60659952 -98939831 - MIR SINE MIR -4 258 73 2 1047 298 331 180 22 chr3 60659965 60660076 -98939707 + RSINE1 SINE B4 3 138 -27 2 1047 261 0 0 0 chr3 60660076 60660105 -98939678 + (TC)n Simple_repeat Simple_repeat 1 29 0 2 1047 298 331 180 22 chr3 60660105 60660132 -98939651 + RSINE1 SINE B4 139 163 -2 2 1047 359 363 6 19 chr3 60660347 60660507 -98939276 - RSINE1 SINE B4 -5 160 3 2 1047 1668 251 15 20 chr3 60661217 60661615 -98938168 - MTD LTR MaLR -23 396 1 2 1047 308 23 0 43 chr3 60662023 60662069 -98937714 + (TCTA)n Simple_repeat Simple_repeat 3 46 0 2 1047 408 331 68 50 chr3 60662499 60662851 -98936932 - ORR1E LTR MaLR -4 375 3 2 1047 242 303 87 39 chr3 60663029 60663156 -98936627 - MIRc SINE MIR -28 240 105 2 1047 1522 134 66 8 chr3 60663388 60663644 -98936139 - ORR1B2 LTR MaLR 0 367 97 2 1047 2230 186 7 48 chr3 60663644 60664166 -98935617 + RLTR31_Mm LTR ERVK 1 440 -144 2 1047 492 18 0 0 chr3 60664198 60664255 -98935528 + (TTTC)n Simple_repeat Simple_repeat 3 59 0 2 1047 450 0 0 0 chr3 60664359 60664409 -98935374 + (CA)n Simple_repeat Simple_repeat 1 50 0 2 1047 253 254 85 0 chr3 60664970 60665029 -98934754 + RLTR17 LTR ERVK 629 692 0 2 1047 375 191 71 0 chr3 60665029 60665103 -98934680 - ORR1B2 LTR MaLR -282 85 6 2 1047 201 372 83 55 chr3 60665146 60665291 -98934492 + MIRb SINE MIR 2 150 -118 2 1047 742 196 7 0 chr3 60666816 60666954 -98932829 - B1_Mus1 SINE Alu 0 148 10 2 1047 403 341 28 35 chr3 60667652 60667795 -98931988 - B1F2 SINE Alu -5 144 3 2 1047 393 276 66 33 chr3 60667801 60667945 -98931838 - B1F SINE Alu -1 148 1 2 1047 762 240 35 17 chr3 60668335 60668509 -98931274 + MTD LTR MaLR 241 417 -2 2 1047 327 361 27 32 chr3 60668555 60668775 -98931008 + L2 LINE L2 2669 2887 -532 2 1047 183 186 0 0 chr3 60669065 60669108 -98930675 + (TG)n Simple_repeat Simple_repeat 2 44 0 2 1047 729 271 32 23 chr3 60669128 60669347 -98930436 - Lx7 LINE L1 -534 7162 6942 2 1047 180 97 0 0 chr3 60669347 60669378 -98930405 + (T)n Simple_repeat Simple_repeat 1 31 0 2 1047 331 256 71 71 chr3 60669378 60669504 -98930279 + B3 SINE B2 87 212 -4 2 1047 27 29 0 0 chr3 60670718 60670752 -98929031 + AT_rich Low_complexity Low_complexity 1 34 0 2 1047 1349 177 27 8 chr3 60671079 60671335 -98928448 - RMER1B Other Other 0 1066 806 2 1047 1815 153 36 0 chr3 60671335 60671642 -98928141 + ORR1A3 LTR MaLR 1 318 -8 2 1047 2773 257 42 44 chr3 60671644 60672053 -98927730 - RMER1B Other Other -254 812 403 2 1047 1703 62 0 9 chr3 60672053 60672281 -98927502 - L1Md_F2 LINE L1 0 6582 6357 2 1047 2773 257 42 44 chr3 60672281 60672641 -98927142 - RMER1B Other Other -664 402 45 2 1047 243 0 0 0 chr3 60672816 60672843 -98926940 + (CA)n Simple_repeat Simple_repeat 2 28 0 2 1047 26 50 0 0 chr3 60672914 60672954 -98926829 + AT_rich Low_complexity Low_complexity 1 40 0 2 1047 10814 58 0 0 chr3 60672986 60674343 -98925440 + L1Md_F2 LINE L1 4230 5586 -297 2 1047 7863 54 10 1 chr3 60674343 60675329 -98924454 + L1Md_F2 LINE L1 5587 6581 -1 2 1047 630 39 0 0 chr3 60675641 60675718 -98924065 + (TA)n Simple_repeat Simple_repeat 1 77 0 2 1047 2363 105 3 24 chr3 60675719 60676090 -98923693 - Lx LINE L1 -6 6648 6286 2 1047 1876 239 40 14 chr3 60676149 60676594 -98923189 - Lx5 LINE L1 -19 7031 6575 2 1047 2995 42 8 3 chr3 60677875 60678253 -98921530 - L1Md_F3 LINE L1 -2 6582 6203 2 1047 2291 113 0 6 chr3 60678399 60678728 -98921055 + ORR1A4 LTR MaLR 3 329 0 2 1047 1982 185 48 22 chr3 60678971 60679385 -98920398 + RMER1B Other Other 639 1063 -3 2 1047 368 181 42 11 chr3 60679803 60679898 -98919885 - Lx9 LINE L1 -317 7327 7230 2 1047 301 355 96 86 chr3 60679898 60680178 -98919605 - MER74A LTR ERVL 0 558 276 2 1047 465 350 54 79 chr3 60682948 60683302 -98916481 + MLT1A LTR MaLR 10 354 -20 2 1047 23 0 0 0 chr3 60684466 60684489 -98915294 + AT_rich Low_complexity Low_complexity 1 23 0 2 1047 494 16 16 0 chr3 60685629 60685692 -98914091 + (CA)n Simple_repeat Simple_repeat 1 64 0 2 1047 231 36 0 0 chr3 60685880 60685908 -98913875 + (CA)n Simple_repeat Simple_repeat 1 28 0 2 1047 180 125 0 0 chr3 60685925 60685957 -98913826 + (GA)n Simple_repeat Simple_repeat 2 33 0 2 130 431 311 123 58 chr3 60686030 60686460 -98913323 - L1M5 LINE L1 -989 5157 4700 2 1048 882 54 0 0 chr3 60686500 60686612 -98913171 - B1_Mm SINE Alu 0 147 36 3 1048 305 336 57 8 chr3 60687464 60687587 -98912196 + B1F SINE Alu 1 129 -20 3 1048 21 36 0 0 chr3 60687597 60687625 -98912158 + AT_rich Low_complexity Low_complexity 1 28 0 3 1048 21 36 0 0 chr3 60688398 60688426 -98911357 + AT_rich Low_complexity Low_complexity 1 28 0 3 1048 21 0 0 0 chr3 60688748 60688769 -98911014 + AT_rich Low_complexity Low_complexity 1 21 0 3 1048 292 318 0 0 chr3 60688997 60689082 -98910701 + B1F2 SINE Alu 60 144 -5 3 1048 249 229 60 50 chr3 60689095 60689205 -98910578 + Lx9 LINE L1 6085 6233 -1411 3 1048 432 0 0 0 chr3 60689205 60689253 -98910530 + (CA)n Simple_repeat Simple_repeat 1 48 0 3 1048 450 0 0 0 chr3 60689253 60689302 -98910481 + (GA)n Simple_repeat Simple_repeat 2 51 0 3 1048 307 246 59 36 chr3 60689302 60689425 -98910358 + Lx9 LINE L1 6362 6464 -1180 3 1048 1899 286 62 28 chr3 60689432 60690190 -98909593 + Lx9 LINE L1 6646 7429 -215 3 1048 189 121 0 0 chr3 60690227 60690260 -98909523 + (TA)n Simple_repeat Simple_repeat 2 34 0 3 1048 482 260 0 0 chr3 60691015 60691142 -98908641 - Lx6 LINE L1 0 7460 7334 3 1048 21 0 0 0 chr3 60691925 60691946 -98907837 + AT_rich Low_complexity Low_complexity 1 21 0 3 1048 2753 165 120 6 chr3 60692651 60693176 -98906607 + RMER4B LTR ERVK 1 585 0 3 1048 549 30 0 0 chr3 60693347 60693414 -98906369 + (TC)n Simple_repeat Simple_repeat 1 67 0 3 1048 360 0 0 0 chr3 60693414 60693453 -98906330 + (CA)n Simple_repeat Simple_repeat 1 40 0 3 1048 282 351 134 22 chr3 60693453 60693730 -98906053 + MLT1D LTR MaLR 192 499 -6 3 1048 394 259 0 0 chr3 60693976 60694057 -98905726 - ID4 SINE ID -2 81 1 3 1048 287 277 8 82 chr3 60694083 60694205 -98905578 - PB1 SINE Alu -3 124 12 3 1048 3239 177 9 31 chr3 60695449 60696033 -98903750 - RLTR20B3 LTR ERVK 0 577 7 3 1048 302 355 25 76 chr3 60697829 60698027 -98901756 - ORR1E LTR MaLR -171 188 1 3 1048 3701 160 15 16 chr3 60698186 60698860 -98900923 - Lx LINE L1 -12 6642 5970 3 1048 295 357 118 43 chr3 60698966 60699382 -98900401 + L2 LINE L2 2556 3002 -417 3 1048 2717 87 10 10 chr3 60699496 60699731 -98900052 - MTA_Mm LTR MaLR -2 394 159 3 1048 1544 91 0 21 chr3 60699731 60699967 -98899816 - L1Md_F2 LINE L1 -2 6580 6350 3 1048 2717 87 10 10 chr3 60699967 60700125 -98899658 - MTA_Mm LTR MaLR -238 158 2 3 1048 427 323 29 40 chr3 60700221 60700395 -98899388 - MLT1A0 LTR MaLR -4 361 190 3 1048 408 363 50 58 chr3 60700448 60700688 -98899095 + MTD LTR MaLR 6 243 -176 3 1048 675 81 50 29 chr3 60701232 60701371 -98898412 + Lx LINE L1 6513 6654 0 3 1048 211 189 19 19 chr3 60702215 60702269 -98897514 + A-rich Low_complexity Low_complexity 2 55 0 3 1048 637 302 12 18 chr3 60702279 60702444 -98897339 + B3A SINE B2 2 165 -33 3 1048 356 71 18 0 chr3 60702447 60702503 -98897280 + (TCTA)n Simple_repeat Simple_repeat 2 58 0 3 1048 2381 138 217 8 chr3 60702520 60703003 -98896780 + RMER4B LTR ERVK 1 584 -1 3 1048 459 288 67 20 chr3 60703441 60703561 -98896222 + RSINE1 SINE B4 1 120 -45 3 1048 378 0 0 0 chr3 60703561 60703603 -98896180 + (CA)n Simple_repeat Simple_repeat 2 43 0 3 1048 459 288 67 20 chr3 60703603 60703631 -98896152 + RSINE1 SINE B4 121 156 -9 3 1048 2522 133 67 7 chr3 60704062 60704510 -98895273 - IAPLTR2_Mm LTR ERVK 0 475 1 3 1048 22 56 0 0 chr3 60704526 60704562 -98895221 + AT_rich Low_complexity Low_complexity 1 36 0 3 1048 650 253 88 49 chr3 60704730 60704897 -98894886 + B3A SINE B2 5 177 -39 3 1048 462 36 0 0 chr3 60704897 60704953 -98894830 + (CA)n Simple_repeat Simple_repeat 1 56 0 3 1048 648 253 88 49 chr3 60704953 60704989 -98894794 + B3 SINE B2 178 216 0 3 1048 444 278 132 33 chr3 60706427 60706891 -98892892 - L1MD LINE L1 -767 5379 4856 3 1048 1283 290 139 4 chr3 60707170 60707682 -98892101 + Lx8 LINE L1 6886 7466 -7 3 1048 343 304 165 46 chr3 60708321 60708426 -98891357 + L1M2 LINE L1 2098 2239 -3608 3 1048 540 280 111 18 chr3 60708426 60708597 -98891186 + B3A SINE B2 1 187 -11 3 1048 343 304 165 46 chr3 60708597 60708656 -98891127 + L1M2 LINE L1 2240 2341 -3506 3 1048 234 0 0 0 chr3 60708656 60708682 -98891101 + (CTA)n Simple_repeat Simple_repeat 1 26 0 3 1048 429 304 165 46 chr3 60708682 60708979 -98890804 + L1M2 LINE L1 2325 2645 -3495 3 1048 193 29 29 29 chr3 60708979 60709014 -98890769 + (CAAA)n Simple_repeat Simple_repeat 3 37 0 3 1048 608 308 112 9 chr3 60709014 60709486 -98890297 + L1M2 LINE L1 2613 3151 -2989 3 1048 330 327 31 36 chr3 60709726 60709948 -98889835 - Charlie25 DNA MER1_type -9 2515 2295 3 1048 265 241 125 11 chr3 60710444 60710532 -98889251 + RMER16 LTR ERVK 387 484 -49 3 1048 5094 49 2 2 chr3 60710544 60711174 -98888609 - L1Md_F2 LINE L1 -13 6569 5940 3 1048 975 47 0 8 chr3 60711178 60711307 -98888476 - L1_Mus1 LINE L1 -1 6566 6439 3 1048 2650 67 0 0 chr3 60711307 60711636 -98888147 + L1_Mus1 LINE L1 6093 6421 -146 3 1048 394 134 30 0 chr3 60711636 60711703 -98888080 + RMER16 LTR ERVK 463 531 -2 3 1048 398 235 0 48 chr3 60711737 60711862 -98887921 + Lx9 LINE L1 7524 7642 -2 3 1048 1116 207 104 0 chr3 60712264 60712544 -98887239 + Lx9 LINE L1 7311 7619 -25 3 1048 22 0 0 0 chr3 60712552 60712574 -98887209 + AT_rich Low_complexity Low_complexity 1 22 0 3 1048 671 299 16 1 chr3 60712582 60712841 -98886942 - Lx6 LINE L1 -759 6701 6223 3 1048 525 16 0 0 chr3 60712931 60712993 -98886790 + (CA)n Simple_repeat Simple_repeat 1 62 0 3 1048 340 318 27 27 chr3 60713118 60713228 -98886555 - PB1D10 SINE Alu -7 110 1 3 1048 680 344 10 44 chr3 60714668 60714872 -98884911 + B3A SINE B2 1 197 -1 3 1048 2485 210 47 93 chr3 60715240 60715897 -98883886 - RMER20B LTR ERVK 0 627 1 3 1048 405 0 0 0 chr3 60716683 60716728 -98883055 + (TG)n Simple_repeat Simple_repeat 2 46 0 3 1048 357 24 0 0 chr3 60717733 60717775 -98882008 + (TAAA)n Simple_repeat Simple_repeat 3 44 0 3 1048 21 0 0 0 chr3 60717787 60717808 -98881975 + AT_rich Low_complexity Low_complexity 1 21 0 3 1048 588 40 0 0 chr3 60717819 60717894 -98881889 + (GAAA)n Simple_repeat Simple_repeat 1 75 0 3 1048 249 274 82 138 chr3 60719111 60719306 -98880477 - RMER15 LTR ERVL -390 185 2 3 1048 230 21 41 41 chr3 60719653 60719702 -98880081 + (CAAAAA)n Simple_repeat Simple_repeat 2 50 0 3 1048 618 310 81 11 chr3 60721083 60721269 -98878514 + B3 SINE B2 12 210 -6 3 1048 756 283 66 24 chr3 60722075 60722243 -98877540 + L1MD2 LINE L1 5515 5678 -681 3 1048 198 0 0 0 chr3 60722243 60722265 -98877518 + (TA)n Simple_repeat Simple_repeat 2 23 0 3 1048 756 283 66 24 chr3 60722265 60722505 -98877278 + L1MD2 LINE L1 5679 5940 -419 3 1048 227 333 19 77 chr3 60723368 60723472 -98876311 + PB1D10 SINE Alu 1 98 -19 3 1048 872 300 110 12 chr3 60723498 60724273 -98875510 + L1MA8 LINE L1 5163 6024 -267 3 1048 270 275 54 18 chr3 60724382 60724493 -98875290 + L1MA8 LINE L1 6172 6286 -5 3 1048 291 240 138 8 chr3 60724690 60724820 -98874963 + L1M2 LINE L1 4985 5131 -1012 3 1048 342 0 0 0 chr3 60725120 60725158 -98874625 + (TG)n Simple_repeat Simple_repeat 2 39 0 3 1048 422 320 0 45 chr3 60725159 60725313 -98874470 - RSINE1 SINE B4 -16 149 3 3 1048 1554 165 11 3 chr3 60725348 60725634 -98874149 - Lx2 LINE L1 0 6997 6710 3 1048 198 160 100 0 chr3 60725718 60725768 -98874015 - L3 LINE CR1 -1954 2535 2481 3 1048 24 91 0 0 chr3 60728380 60728446 -98871337 + AT_rich Low_complexity Low_complexity 1 66 0 3 1048 24 0 0 0 chr3 60729861 60729885 -98869898 + AT_rich Low_complexity Low_complexity 1 24 0 3 1048 198 0 0 0 chr3 60731456 60731478 -98868305 + (T)n Simple_repeat Simple_repeat 1 22 0 3 1048 1157 54 7 0 chr3 60731514 60731661 -98868122 - B1_Mus1 SINE Alu 0 148 1 3 1048 399 343 78 43 chr3 60731726 60732073 -98867710 + ORR1E LTR MaLR 1 359 0 3 1048 348 380 24 0 chr3 60732888 60733103 -98866680 + MER58A DNA MER1_type 1 224 0 3 1048 732 209 143 0 chr3 60734768 60734978 -98864805 - Lx9 LINE L1 -6 7638 7399 3 1048 1097 291 105 19 chr3 60735574 60736289 -98863494 + L1MA4 LINE L1 5117 5926 -374 3 1048 271 352 81 27 chr3 60736993 60737104 -98862679 + RSINE1 SINE B4 43 159 -6 3 1048 348 176 0 0 chr3 60737110 60737178 -98862605 + CT-rich Low_complexity Low_complexity 1 68 0 3 1048 528 111 0 0 chr3 60738422 60738521 -98861262 + (TAGA)n Simple_repeat Simple_repeat 4 102 0 3 1048 393 339 51 67 chr3 60738569 60738885 -98860898 + Charlie7 DNA MER1_type 358 668 -1944 3 1048 616 210 0 47 chr3 60739141 60739291 -98860492 - RMER1A Other Other -4 1026 884 3 1048 1151 112 6 0 chr3 60739299 60739478 -98860305 + (TTCTC)n Simple_repeat Simple_repeat 1 180 0 3 1048 1474 211 27 10 chr3 60739485 60739782 -98860001 - RMER1B Other Other -210 856 555 3 1048 535 272 96 37 chr3 60739851 60740038 -98859745 - RMER1B Other Other -824 242 45 3 1048 2195 235 2 2 chr3 60740445 60740889 -98858894 - Lx6 LINE L1 -4 7456 7013 3 1048 294 266 0 0 chr3 60740891 60740955 -98858828 - L1_Mur3 LINE L1 -2243 3637 3574 3 1048 1868 278 147 34 chr3 60741067 60741949 -98857834 - L1_Mur3 LINE L1 -6652 1076 95 3 1048 607 284 113 98 chr3 60742143 60742850 -98856933 + MuRRS4-int LTR ERV1 1731 2448 -5108 3 1048 1718 320 35 35 chr3 60743009 60744506 -98855277 + MuRRS4-int LTR ERV1 3533 5558 -1998 3 1048 469 345 44 11 chr3 60745032 60745050 -98854733 + MuRRS4-int LTR ERV1 4663 4728 -335 3 1048 474 315 60 10 chr3 60745050 60745249 -98854534 + RNERVK23-int LTR ERVK 7541 7749 -468 3 1048 469 345 44 11 chr3 60745249 60745302 -98854481 + MuRRS4-int LTR ERV1 4729 4941 -122 3 1048 2163 98 167 0 chr3 60745400 60745778 -98854005 + RLTR47_MM LTR ERV1 1 441 -91 3 1048 281 253 11 33 chr3 60745985 60746075 -98853708 + GA-rich Low_complexity Low_complexity 2 89 0 3 1048 631 326 0 26 chr3 60746137 60746329 -98853454 - B4 SINE B4 -105 187 1 3 1048 1932 287 63 16 chr3 60748117 60748644 -98851139 + Lx8 LINE L1 6801 7354 -119 3 1048 207 0 0 0 chr3 60748644 60748667 -98851116 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 3 1048 1932 287 63 16 chr3 60748667 60748773 -98851010 + Lx8 LINE L1 7355 7464 -9 3 1048 25 31 0 0 chr3 60748785 60748817 -98850966 + AT_rich Low_complexity Low_complexity 1 32 0 3 1048 461 240 9 28 chr3 60748824 60748931 -98850852 - Lx8 LINE L1 -313 7160 7056 3 1048 958 228 129 66 chr3 60749855 60750203 -98849580 - ORR1D1 LTR MaLR 0 374 5 3 1048 182 345 57 74 chr3 60750599 60750721 -98849062 + MER5A DNA MER1_type 45 164 -25 3 1048 297 135 0 0 chr3 60751219 60751271 -98848512 + (CA)n Simple_repeat Simple_repeat 2 53 0 3 1048 357 322 100 105 chr3 60751415 60751776 -98848007 + ORR1E LTR MaLR 1 359 0 4 1048 492 148 0 0 chr3 60751783 60751891 -98847892 + (CTA)n Simple_repeat Simple_repeat 2 109 0 4 1048 515 15 0 29 chr3 60752004 60752073 -98847710 + (TAGA)n Simple_repeat Simple_repeat 4 70 0 4 1048 415 378 24 6 chr3 60752432 60752597 -98847186 - ID_B1 SINE B4 -2 222 55 4 1048 22 0 0 0 chr3 60753595 60753617 -98846166 + AT_rich Low_complexity Low_complexity 1 22 0 4 1048 234 0 0 0 chr3 60754798 60754824 -98844959 + (CAA)n Simple_repeat Simple_repeat 2 27 0 4 1048 198 0 0 0 chr3 60755291 60755313 -98844470 + (TAAAA)n Simple_repeat Simple_repeat 2 23 0 4 1048 212 0 36 0 chr3 60756579 60756607 -98843176 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 4 1048 317 326 36 72 chr3 60756729 60756795 -98842988 - B2_Mm2 SINE B2 -6 189 131 4 1048 333 47 0 0 chr3 60756795 60756838 -98842945 + (TG)n Simple_repeat Simple_repeat 2 44 0 4 1048 317 326 36 72 chr3 60756838 60756966 -98842817 - B2_Mm2 SINE B2 -65 130 2 4 1048 608 264 0 20 chr3 60756983 60757134 -98842649 - B1_Mur1 SINE Alu -1 148 1 4 1048 21 0 0 0 chr3 60757745 60757766 -98842017 + AT_rich Low_complexity Low_complexity 1 21 0 4 1048 985 292 138 5 chr3 60757971 60758356 -98841427 - MER34 LTR ERV1 -79 463 28 4 1048 3142 46 38 0 chr3 60758990 60759384 -98840399 + L1Md_F2 LINE L1 6174 6582 0 4 1048 213 180 0 0 chr3 60759835 60759885 -98839898 + (CATATA)n Simple_repeat Simple_repeat 2 51 0 4 1048 828 264 28 24 chr3 60761648 60761861 -98837922 + B3A SINE B2 3 216 0 4 1048 364 186 53 23 chr3 60763649 60763781 -98836002 - Lx9 LINE L1 -7 7637 7502 4 1048 201 94 0 0 chr3 60763892 60763924 -98835859 + (TTAA)n Simple_repeat Simple_repeat 3 34 0 4 1048 308 215 8 32 chr3 60764075 60764200 -98835583 + GA-rich Low_complexity Low_complexity 2 123 0 4 1048 333 0 0 0 chr3 60764720 60764757 -98835026 + (CA)n Simple_repeat Simple_repeat 2 38 0 4 1048 595 325 10 17 chr3 60765079 60765376 -98834407 + Lx9 LINE L1 7232 7526 -118 4 1048 3808 223 63 78 chr3 60765686 60766483 -98833300 + MTC-int LTR MaLR 177 998 -260 4 1048 522 0 0 0 chr3 60766483 60766541 -98833242 + (CAAAA)n Simple_repeat Simple_repeat 2 59 0 4 1048 3808 223 63 78 chr3 60766541 60766702 -98833081 + MTC-int LTR MaLR 999 1119 -139 4 1048 2588 38 0 0 chr3 60766702 60767016 -98832767 - L1Md_A LINE L1 -3 6579 6266 4 1048 3808 223 63 78 chr3 60767016 60767152 -98832631 + MTC-int LTR MaLR 1120 1256 -2 4 1048 1001 83 0 8 chr3 60767233 60767366 -98832417 + B1_Mm SINE Alu 1 132 -15 4 1048 206 32 32 0 chr3 60767368 60767399 -98832384 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 4 1048 741 255 27 66 chr3 60767402 60767632 -98832151 + MTD LTR MaLR 68 247 -160 4 1048 7964 54 1 2 chr3 60767632 60768629 -98831154 + L1Md_F2 LINE L1 5587 6582 0 4 1048 626 242 88 28 chr3 60768629 60768823 -98830960 + MTD LTR MaLR 220 419 0 4 1048 33 25 0 0 chr3 60770468 60770508 -98829275 + AT_rich Low_complexity Low_complexity 1 40 0 4 1048 356 340 0 20 chr3 60770539 60770638 -98829145 - RMER20B LTR ERVK -25 602 506 4 1048 339 327 92 130 chr3 60770633 60770742 -98829041 - RMER20B LTR ERVK -31 596 484 4 1048 429 20 0 0 chr3 60770742 60770792 -98828991 + (TG)n Simple_repeat Simple_repeat 2 51 0 4 1048 339 327 92 130 chr3 60770792 60770974 -98828809 - RMER20B LTR ERVK -144 483 316 4 1048 1157 180 45 34 chr3 60771043 60771410 -98828373 - BGLII_B LTR ERVK -36 386 4 4 1048 243 257 53 13 chr3 60771410 60771483 -98828300 - RMER20B LTR ERVK -222 294 219 4 1048 231 173 17 119 chr3 60771823 60771882 -98827901 + B4 SINE B4 3 55 -237 4 1048 4344 14 2 12 chr3 60772274 60772772 -98827011 + MT2_Mm LTR ERVL 1 493 0 4 1048 47348 14 8 0 chr3 60772772 60778092 -98821691 + MERVL-int LTR ERVL 1 5360 -125 4 1048 380 179 46 35 chr3 60778092 60778179 -98821604 + ORR1A3-int LTR MaLR 553 640 -1323 4 1048 302 0 0 0 chr3 60778179 60778217 -98821566 + MERVL-int LTR ERVL 5448 5485 0 4 1048 4362 14 2 12 chr3 60778217 60778715 -98821068 + MT2_Mm LTR ERVL 1 493 0 4 1048 205 298 91 38 chr3 60779002 60779154 -98820629 - MIR SINE MIR -87 175 20 4 1048 405 331 109 53 chr3 60779917 60780009 -98819774 + MLT1D LTR MaLR 3 87 -418 4 1048 423 0 0 0 chr3 60780009 60780056 -98819727 + (CA)n Simple_repeat Simple_repeat 2 48 0 4 1048 405 331 109 53 chr3 60780056 60780432 -98819351 + MLT1D LTR MaLR 88 497 -8 4 1048 423 0 0 0 chr3 60780448 60780495 -98819288 + (CA)n Simple_repeat Simple_repeat 2 48 0 4 1048 280 143 25 25 chr3 60781378 60781457 -98818326 + (TCTCTG)n Simple_repeat Simple_repeat 2 80 0 4 1048 459 0 0 0 chr3 60781460 60781511 -98818272 + (TG)n Simple_repeat Simple_repeat 2 52 0 4 1048 552 314 79 88 chr3 60781518 60781871 -98817912 + ORR1E LTR MaLR 9 358 -1 4 1048 1846 50 0 0 chr3 60782185 60782423 -98817360 - L1_Mus1 LINE L1 -740 5827 5590 4 1048 412 277 22 37 chr3 60782736 60782871 -98816912 + B1F1 SINE Alu 9 141 -8 4 1048 856 233 101 0 chr3 60782984 60783173 -98816610 + B3 SINE B2 1 208 -8 4 1048 437 295 50 25 chr3 60783412 60783612 -98816171 - MTD LTR MaLR -197 182 6 4 1048 206 32 0 31 chr3 60783785 60783817 -98815966 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 4 1048 23 0 0 0 chr3 60784071 60784094 -98815689 + AT_rich Low_complexity Low_complexity 1 23 0 4 1048 357 335 35 109 chr3 60784863 60785037 -98814746 - RSINE1 SINE B4 -2 163 3 4 1048 309 365 213 23 chr3 60785585 60785933 -98813850 - HAL1 LINE L1 -947 1560 1147 4 1048 348 24 0 0 chr3 60786050 60786091 -98813692 + (TATG)n Simple_repeat Simple_repeat 3 43 0 4 1048 302 391 36 69 chr3 60786115 60786390 -98813393 - B4A SINE B4 -3 289 24 4 1048 286 197 0 83 chr3 60786923 60786954 -98812829 + U6 snRNA snRNA 41 66 -41 4 1048 1960 130 12 58 chr3 60786954 60787297 -98812486 - ORR1A2 LTR MaLR 0 327 1 4 1048 286 197 0 83 chr3 60787297 60787337 -98812446 + U6 snRNA snRNA 67 106 -1 4 1048 13443 170 26 4 chr3 60787340 60790159 -98809624 + Lx3C LINE L1 1166 4035 -1851 4 1048 1670 235 35 5 chr3 60790161 60790538 -98809245 + RLTR16 LTR ERVK 1 388 -117 4 1048 1661 125 3 7 chr3 60790541 60790832 -98808951 + Lx3C LINE L1 5133 5422 -464 4 1048 1614 115 139 3 chr3 60790832 60791120 -98808663 + IAPEY3_LTR LTR ERVK 1 327 -5 4 1048 6871 167 30 18 chr3 60791122 60792681 -98807102 + Lx3C LINE L1 5416 6975 -1 4 1048 538 220 51 0 chr3 60793346 60793464 -98806319 + ORR1D2 LTR MaLR 247 370 0 4 1048 945 293 89 31 chr3 60793542 60794024 -98805759 - L1MC1 LINE L1 -19 6314 5805 4 1048 469 261 48 18 chr3 60794091 60794335 -98805448 - L1MC1 LINE L1 -2365 5420 5171 4 1048 309 243 5 68 chr3 60794433 60794523 -98805260 - FAM SINE Alu -77 234 167 4 1048 320 329 56 50 chr3 60794540 60794700 -98805083 - L1MC1 LINE L1 -992 5154 4994 4 1048 291 148 11 22 chr3 60794838 60794928 -98804855 + (TA)n Simple_repeat Simple_repeat 1 89 0 4 1048 230 193 16 66 chr3 60797116 60797177 -98802606 - MTE2b LTR MaLR 0 379 322 4 1048 659 297 33 78 chr3 60797731 60798126 -98801657 - MTE2a LTR MaLR 0 379 3 4 1048 391 283 36 13 chr3 60798640 60798795 -98800988 - L1M3 LINE L1 -402 5760 5603 4 1048 283 96 19 19 chr3 60799330 60799383 -98800400 + (TCC)n Simple_repeat Simple_repeat 3 55 0 4 1048 4874 43 0 0 chr3 60799397 60799977 -98799806 - L1Md_T LINE L1 -3 6579 6000 4 1048 230 180 16 0 chr3 60799999 60800060 -98799723 + CT-rich Low_complexity Low_complexity 2 63 0 4 1048 288 77 0 0 chr3 60801335 60801374 -98798409 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 4 1048 300 303 18 44 chr3 60801749 60801818 -98797965 + PB1D9 SINE Alu 1 70 -50 4 1048 342 0 0 0 chr3 60801818 60801856 -98797927 + (CAA)n Simple_repeat Simple_repeat 1 38 0 4 1048 300 303 18 44 chr3 60801856 60801900 -98797883 + PB1D9 SINE Alu 71 111 -9 4 1048 671 300 28 0 chr3 60803169 60803349 -98796434 - B3 SINE B2 -4 212 28 4 1048 251 188 31 0 chr3 60805053 60805117 -98794666 + (TCTCTG)n Simple_repeat Simple_repeat 2 67 0 4 1048 432 37 0 0 chr3 60805118 60805172 -98794611 + (TC)n Simple_repeat Simple_repeat 2 55 0 4 1048 420 20 0 0 chr3 60805172 60805220 -98794563 + (TG)n Simple_repeat Simple_repeat 2 50 0 4 1048 538 268 30 89 chr3 60805223 60805391 -98794392 - RSINE1 SINE B4 -6 159 2 4 1048 360 43 0 0 chr3 60808744 60808790 -98790993 + (GA)n Simple_repeat Simple_repeat 1 46 0 4 1048 23 0 0 0 chr3 60809899 60809922 -98789861 + AT_rich Low_complexity Low_complexity 1 23 0 4 1048 236 300 0 0 chr3 60810661 60810731 -98789052 - ID4 SINE ID -13 70 1 4 1048 207 0 0 0 chr3 60812189 60812212 -98787571 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 4 1048 206 0 69 0 chr3 60812251 60812280 -98787503 + (TTTTG)n Simple_repeat Simple_repeat 5 35 0 4 1048 306 0 0 0 chr3 60812745 60812779 -98787004 + (TG)n Simple_repeat Simple_repeat 2 35 0 4 1048 188 34 0 33 chr3 60812950 60812980 -98786803 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 4 1048 1158 37 0 0 chr3 60812980 60813116 -98786667 - B1_Mm SINE Alu -10 137 2 4 1048 639 0 0 0 chr3 60813275 60813346 -98786437 + (CTATT)n Simple_repeat Simple_repeat 2 72 0 4 1048 477 0 0 0 chr3 60813352 60813405 -98786378 + (CA)n Simple_repeat Simple_repeat 1 53 0 4 1048 501 17 0 0 chr3 60813618 60813676 -98786107 + (TG)n Simple_repeat Simple_repeat 1 58 0 4 1048 246 62 0 0 chr3 60813754 60813786 -98785997 + (TG)n Simple_repeat Simple_repeat 1 32 0 4 1048 201 82 40 20 chr3 60814472 60814522 -98785261 + (TTTTTG)n Simple_repeat Simple_repeat 4 54 0 4 1048 252 0 0 0 chr3 60814726 60814754 -98785029 + (TG)n Simple_repeat Simple_repeat 2 29 0 4 1048 435 333 57 29 chr3 60815656 60815900 -98783883 - MamRep605 Unknown Unknown -55 821 571 4 1049 693 0 0 0 chr3 60817423 60817500 -98782283 + (TTCTC)n Simple_repeat Simple_repeat 1 77 0 4 1049 1368 56 0 11 chr3 60817503 60817873 -98781910 + (TCTCC)n Simple_repeat Simple_repeat 1 365 0 4 1049 1847 140 131 131 chr3 60817875 60818319 -98781464 + RLTR41 LTR ERV1 1 444 -2 4 1049 22 0 0 0 chr3 60818332 60818354 -98781429 + AT_rich Low_complexity Low_complexity 1 22 0 4 1049 1974 147 75 9 chr3 60818355 60818704 -98781079 - Lx4A LINE L1 -2 7056 6685 4 1049 248 423 6 24 chr3 60818725 60818892 -98780891 + MLT1G LTR MaLR 428 591 0 4 1049 299 279 70 81 chr3 60819080 60819252 -98780531 - MURVY-LTR LTR ERV1 -48 471 302 4 1049 714 254 106 121 chr3 60819552 60819874 -98779909 - MTE2a LTR MaLR -62 317 1 4 1049 963 326 86 18 chr3 60819880 60820274 -98779509 - MTE2a-int LTR MaLR -7 1573 1153 4 1049 1280 273 32 3 chr3 60820274 60820586 -98779197 - ORR1D2 LTR MaLR -40 330 10 4 1049 1886 186 21 40 chr3 60820605 60820985 -98778798 - ORR1C1 LTR MaLR -5 373 1 5 1049 1031 283 93 30 chr3 60820989 60821291 -98778492 - MTE2a-int LTR MaLR -428 1152 832 4 1049 429 198 20 40 chr3 60821305 60821405 -98778378 - MTE2a-int LTR MaLR -1480 100 3 4 1049 949 291 71 95 chr3 60821405 60821784 -98777999 - MTE2a LTR MaLR -9 370 1 4 1049 2110 135 9 15 chr3 60821863 60822202 -98777581 + Lx2 LINE L1 6661 6997 0 5 1049 437 311 8 0 chr3 60823627 60823759 -98776024 + B1F SINE Alu 1 133 -16 5 1049 369 58 0 0 chr3 60824794 60824846 -98774937 + (TA)n Simple_repeat Simple_repeat 1 52 0 5 1049 754 197 0 21 chr3 60826546 60826686 -98773097 - B1_Mur3 SINE Alu -6 143 7 5 1049 396 0 0 0 chr3 60826847 60826891 -98772892 + (CA)n Simple_repeat Simple_repeat 2 45 0 5 1049 516 265 5 27 chr3 60826901 60827087 -98772696 - L1MA4 LINE L1 -364 5936 5755 5 1049 382 284 12 94 chr3 60827279 60827308 -98772475 - B3 SINE B2 0 216 192 5 1049 351 105 0 0 chr3 60827308 60827365 -98772418 + (TCTA)n Simple_repeat Simple_repeat 4 60 0 5 1049 382 284 12 94 chr3 60827365 60827399 -98772384 - B3 SINE B2 -25 191 165 5 1049 330 26 0 0 chr3 60827399 60827438 -98772345 + (GA)n Simple_repeat Simple_repeat 1 39 0 5 1049 382 284 12 94 chr3 60827438 60827544 -98772239 - B3 SINE B2 -52 164 60 5 1049 486 0 0 0 chr3 60829262 60829316 -98770467 + (TC)n Simple_repeat Simple_repeat 1 54 0 5 1049 21345 80 2 1 chr3 60829612 60832645 -98767138 + L1Md_F2 LINE L1 2550 5586 -297 5 1049 7598 65 12 3 chr3 60832645 60833632 -98766151 + L1Md_F2 LINE L1 5587 6582 0 5 1049 366 301 20 1 chr3 60834842 60834943 -98764840 + B1F2 SINE Alu 7 106 -11 5 1049 264 347 179 0 chr3 60835625 60835821 -98763962 + MIR SINE MIR 18 248 -14 5 1049 21 0 0 0 chr3 60836543 60836564 -98763219 + AT_rich Low_complexity Low_complexity 1 21 0 5 1049 225 94 0 0 chr3 60837391 60837423 -98762360 + (GA)n Simple_repeat Simple_repeat 1 32 0 5 1049 555 16 0 0 chr3 60837647 60837711 -98762072 + (CA)n Simple_repeat Simple_repeat 2 65 0 5 1049 426 20 0 0 chr3 60837754 60837805 -98761978 + (TAAA)n Simple_repeat Simple_repeat 2 52 0 5 1049 460 264 53 23 chr3 60837943 60838075 -98761708 + RSINE1 SINE B4 11 146 -19 5 1049 840 244 37 0 chr3 60838508 60838725 -98761058 + URR1B DNA MER1_type 1 225 0 5 1049 186 133 0 0 chr3 60839364 60839394 -98760389 + (CA)n Simple_repeat Simple_repeat 2 31 0 5 1049 23 33 0 0 chr3 60840807 60840837 -98758946 + AT_rich Low_complexity Low_complexity 1 30 0 5 1049 386 308 39 0 chr3 60841546 60841650 -98758133 + MER63A DNA AcHobo 46 153 -57 5 1049 321 68 0 0 chr3 60841788 60841832 -98757951 + (TTTA)n Simple_repeat Simple_repeat 2 45 0 5 1049 375 328 57 11 chr3 60842571 60842879 -98756904 + L1MA4 LINE L1 3371 3692 -2451 5 1049 546 89 0 0 chr3 60842880 60842970 -98756813 + (GA)n Simple_repeat Simple_repeat 1 90 0 5 1049 591 310 43 35 chr3 60842984 60843379 -98756404 + L1MA4 LINE L1 3659 4056 -2084 5 1049 238 353 70 12 chr3 60843403 60843489 -98756294 - LTR78 LTR ERV1 -363 941 851 5 1049 1242 306 102 30 chr3 60843535 60844708 -98755075 + L1MA4 LINE L1 4239 5491 -809 5 1049 285 29 0 0 chr3 60844708 60844742 -98755041 + (TG)n Simple_repeat Simple_repeat 1 34 0 5 1049 558 0 0 0 chr3 60844742 60844803 -98754980 + (GA)n Simple_repeat Simple_repeat 1 62 0 5 1049 706 282 107 51 chr3 60844803 60845255 -98754528 + L1MA4 LINE L1 5492 5997 -300 5 1049 443 138 11 0 chr3 60845638 60845725 -98754058 + (TG)n Simple_repeat Simple_repeat 1 88 0 5 1049 453 311 101 25 chr3 60845725 60845764 -98754019 - ID_B1 SINE B4 -10 214 176 5 1049 378 0 0 0 chr3 60845764 60845806 -98753977 + (CA)n Simple_repeat Simple_repeat 1 42 0 5 1049 453 311 101 25 chr3 60845806 60845964 -98753819 - ID_B1 SINE B4 -49 175 3 5 1049 2548 63 147 3 chr3 60846102 60846470 -98753313 + BGLII LTR ERVK 1 421 0 5 1049 192 77 0 0 chr3 60847038 60847064 -98752719 + (T)n Simple_repeat Simple_repeat 1 26 0 5 1049 2103 63 7 20 chr3 60847064 60847370 -98752413 - L1_Mus1 LINE L1 -49 6518 6217 5 1049 294 321 56 56 chr3 60847388 60847530 -98752253 + MER3 DNA MER1_type 1 142 -67 5 1049 861 277 59 30 chr3 60848139 60848478 -98751305 - Lx8 LINE L1 -9 7464 7116 5 1049 850 301 42 108 chr3 60848479 60848779 -98751004 + Lx8 LINE L1 6484 6788 -685 5 1049 1833 62 50 0 chr3 60848779 60849021 -98750762 + L1Md_F2 LINE L1 6327 6580 -2 5 1049 850 301 42 108 chr3 60849021 60849293 -98750490 + Lx8 LINE L1 6789 7018 -455 5 1049 380 287 135 77 chr3 60849371 60849541 -98750242 - MTEb LTR MaLR -57 322 143 5 1049 231 263 53 0 chr3 60851492 60851549 -98748234 - MLT1H2 LTR MaLR -338 151 92 5 1049 232 321 60 60 chr3 60852207 60852323 -98747460 - PB1D10 SINE Alu -33 116 1 5 1049 1185 129 5 20 chr3 60852555 60852752 -98747031 - B2_Mm2 SINE B2 0 195 2 5 1049 247 338 81 38 chr3 60853999 60854159 -98745624 + MER5B DNA MER1_type 6 172 -6 5 1049 647 100 0 0 chr3 60855035 60855135 -98744648 - L1_Mus2 LINE L1 0 6566 6467 5 1049 2812 120 34 32 chr3 60855233 60855706 -98744077 + MT2C_Mm LTR ERVL 2 475 0 5 1049 795 216 18 6 chr3 60855767 60855935 -98743848 - ORR1D1 LTR MaLR 0 374 205 5 1049 1856 231 45 15 chr3 60855935 60856466 -98743317 + Lx LINE L1 2250 2796 -3090 5 1049 1568 51 0 0 chr3 60856461 60856656 -98743127 + L1Md_F3 LINE L1 5391 5585 -298 5 1049 7917 53 1 0 chr3 60856657 60857637 -98742146 + L1Md_F3 LINE L1 5587 6567 -17 5 1049 360 0 0 0 chr3 60858759 60858799 -98740984 + (GA)n Simple_repeat Simple_repeat 1 40 0 5 1049 218 56 28 0 chr3 60859117 60859153 -98740630 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 5 1049 2489 135 6 37 chr3 60859153 60859645 -98740138 + Lx LINE L1 2796 3272 -2605 5 1049 7462 169 92 14 chr3 60859638 60860221 -98739562 + Lx LINE L1 4134 4775 -1102 5 1049 1241 96 0 11 chr3 60860221 60860400 -98739383 - B2_Mm2 SINE B2 -18 177 1 5 1049 7462 159 38 8 chr3 60860400 60862207 -98737576 + Lx LINE L1 4776 6653 -1 5 1049 201 176 0 0 chr3 60862209 60862243 -98737540 + A-rich Low_complexity Low_complexity 1 34 0 5 1049 772 213 11 63 chr3 60862409 60862699 -98737084 + Lx5 LINE L1 908 1222 -6506 5 1049 2094 12 0 0 chr3 60862707 60862954 -98736829 - L1Md_T LINE L1 -765 5118 4872 5 1049 4090 18 0 0 chr3 60862952 60863447 -98736336 + L1Md_T LINE L1 5092 5586 -297 5 1049 9025 6 0 0 chr3 60863447 60864443 -98735340 + L1Md_T LINE L1 5587 6582 0 5 1049 5929 189 19 13 chr3 60864446 60865282 -98734501 + Lx5 LINE L1 1207 2051 -3826 5 1049 336 64 0 0 chr3 60865282 60865329 -98734454 + (CA)n Simple_repeat Simple_repeat 2 48 0 5 1049 5929 189 19 13 chr3 60865329 60865844 -98733939 + Lx5 LINE L1 2052 2566 -3311 5 1049 4929 224 35 41 chr3 60865833 60868133 -98731650 + Lx5 LINE L1 4749 7032 -18 5 1049 318 26 0 0 chr3 60868133 60868172 -98731611 + (TAAG)n Simple_repeat Simple_repeat 1 39 0 5 1049 6486 37 0 0 chr3 60870063 60870827 -98728956 - L1Md_T LINE L1 0 6582 5819 5 1049 1235 205 139 23 chr3 60871373 60871861 -98727922 + RMER19C LTR ERVK 11 611 0 5 1049 21 0 0 0 chr3 60872167 60872188 -98727595 + AT_rich Low_complexity Low_complexity 1 21 0 5 1049 326 317 66 4 chr3 60873541 60873769 -98726014 + L1MDa LINE L1 1147 1388 -5152 5 1049 368 377 57 0 chr3 60873801 60874029 -98725754 + L1MDa LINE L1 1677 1917 -4716 5 1049 197 65 32 0 chr3 60874040 60874071 -98725712 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 5 1049 372 360 76 26 chr3 60874072 60874452 -98725331 + L1MDa LINE L1 1945 2343 -4290 5 1049 1238 85 0 0 chr3 60874490 60874654 -98725129 - B2_Mm2 SINE B2 -31 164 1 5 1049 1076 298 82 53 chr3 60874780 60875496 -98724287 + Lx8 LINE L1 6733 7469 -4 5 1049 487 315 60 5 chr3 60875810 60876027 -98723756 + L1MDa LINE L1 3108 3336 -3201 5 1049 222 128 0 0 chr3 60876282 60876321 -98723462 + (CA)n Simple_repeat Simple_repeat 2 40 0 5 1049 378 0 0 0 chr3 60876321 60876362 -98723421 + (GA)n Simple_repeat Simple_repeat 2 43 0 5 1049 781 309 82 39 chr3 60876994 60877367 -98722416 - MLT1A1 LTR MaLR -38 370 1 5 1049 209 222 0 0 chr3 60878084 60878129 -98721654 + T-rich Low_complexity Low_complexity 1 45 0 5 1049 1196 41 0 7 chr3 60878129 60878278 -98721505 - B1_Mus1 SINE Alu 0 148 1 5 1049 632 325 109 22 chr3 60878625 60878937 -98720846 + MLT1C LTR MaLR 125 463 -4 5 1049 1344 248 24 112 chr3 60879364 60879773 -98720010 - MTE2b LTR MaLR -6 373 1 5 1049 297 325 33 0 chr3 60879988 60880108 -98719675 + MER5A1 DNA MER1_type 39 162 -4 5 1049 564 228 204 0 chr3 60880111 60880273 -98719510 + B3 SINE B2 3 197 -19 5 1049 248 284 63 0 chr3 60880483 60880578 -98719205 + MER3 DNA MER1_type 81 181 -28 5 1049 1670 121 4 0 chr3 60881404 60881643 -98718140 - ORR1A2 LTR MaLR 0 327 88 5 1049 1387 108 39 0 chr3 60881647 60881851 -98717932 - ORR1A2 LTR MaLR -115 212 1 5 1049 25938 95 13 7 chr3 60881978 60888210 -98711573 - L1Md_F2 LINE L1 -12 6570 98 5 1049 1097 230 10 20 chr3 60888198 60888495 -98711288 - L1VL1 LINE L1 -6127 295 2 5 1049 400 304 42 25 chr3 60888726 60888844 -98710939 - PB1D7 SINE Alu 0 120 1 5 1049 300 21 0 41 chr3 60889731 60889780 -98710003 + L1Md_F2 LINE L1 6524 6570 -12 5 1049 420 82 0 0 chr3 60889873 60889934 -98709849 + (TCCC)n Simple_repeat Simple_repeat 1 61 0 5 1049 498 33 0 0 chr3 60889935 60889995 -98709788 + (TTTC)n Simple_repeat Simple_repeat 3 62 0 5 1049 3832 116 0 9 chr3 60889998 60890556 -98709227 - Lx2 LINE L1 -9 6988 6436 5 1049 342 275 0 12 chr3 60890593 60890674 -98709109 + ID4_ SINE ID 1 80 -3 5 1049 41 48 0 0 chr3 60890891 60890953 -98708830 + AT_rich Low_complexity Low_complexity 1 62 0 5 1049 399 328 49 84 chr3 60890961 60891164 -98708619 + B3A SINE B2 3 198 0 5 1049 5411 237 52 37 chr3 60891706 60893341 -98706442 + Lx9 LINE L1 5875 7641 -3 5 1049 21 0 0 0 chr3 60893899 60893920 -98705863 + AT_rich Low_complexity Low_complexity 1 21 0 5 1049 2011 63 0 0 chr3 60894535 60894787 -98704996 + L1_Mus1 LINE L1 6310 6561 -6 5 1049 2104 267 54 10 chr3 60895618 60896230 -98703553 + Lx7 LINE L1 6662 7300 -396 5 1049 489 34 0 0 chr3 60896296 60896355 -98703428 + (TG)n Simple_repeat Simple_repeat 1 59 0 5 1049 234 0 0 0 chr3 60896355 60896380 -98703403 + (GA)n Simple_repeat Simple_repeat 1 26 0 5 1049 33 43 0 0 chr3 60896485 60896532 -98703251 + AT_rich Low_complexity Low_complexity 1 47 0 5 1049 189 183 0 0 chr3 60896629 60896689 -98703094 + A-rich Low_complexity Low_complexity 1 60 0 5 1049 201 121 0 0 chr3 60896929 60896962 -98702821 + (AATAG)n Simple_repeat Simple_repeat 1 33 0 5 1049 305 150 0 74 chr3 60896962 60897070 -98702713 - Lx7 LINE L1 -151 7545 7446 5 1049 3519 176 9 40 chr3 60897069 60897721 -98702062 - Lx5 LINE L1 -146 6904 6273 5 1049 514 210 42 0 chr3 60897727 60897846 -98701937 + Lx5 LINE L1 6924 7047 -3 5 1049 4183 244 41 37 chr3 60897863 60898945 -98700838 - Lx6 LINE L1 -276 7184 6099 5 1049 258 315 33 0 chr3 60898946 60899038 -98700745 + Lx7 LINE L1 7585 7679 -17 5 1049 200 268 0 0 chr3 60899062 60899133 -98700650 + A-rich Low_complexity Low_complexity 1 71 0 5 1049 1853 54 0 0 chr3 60899229 60899452 -98700331 + L1Md_F2 LINE L1 5363 5585 -298 5 1049 7756 59 4 7 chr3 60899454 60900450 -98699333 + L1Md_F2 LINE L1 5588 6580 -2 5 1049 31 26 0 0 chr3 60900458 60900496 -98699287 + AT_rich Low_complexity Low_complexity 1 38 0 6 1049 344 385 10 0 chr3 60901606 60901710 -98698073 - RSINE1 SINE B4 -4 161 57 6 1049 193 75 24 24 chr3 60901880 60901921 -98697862 + (CAAAA)n Simple_repeat Simple_repeat 1 41 0 6 1049 414 246 36 93 chr3 60901965 60902158 -98697625 - Lx7 LINE L1 -333 7363 7182 6 1049 258 116 101 7 chr3 60902216 60902355 -98697428 + (TA)n Simple_repeat Simple_repeat 2 153 0 6 1049 524 302 43 101 chr3 60902859 60903117 -98696666 + Lx8 LINE L1 6601 6843 -630 6 1049 21 36 0 0 chr3 60903156 60903184 -98696599 + AT_rich Low_complexity Low_complexity 1 28 0 6 1049 472 315 292 71 chr3 60903340 60903607 -98696176 + Lx8 LINE L1 6936 7265 -208 6 1049 2325 47 0 0 chr3 60903607 60903886 -98695897 + L1Md_F2 LINE L1 6289 6567 -15 6 1049 242 345 24 149 chr3 60903886 60904068 -98695715 + Lx8 LINE L1 7266 7422 -51 6 1049 4393 51 206 3 chr3 60904106 60904700 -98695083 + L1_Mm LINE L1 4863 5587 -296 6 1049 8626 22 0 0 chr3 60904700 60905695 -98694088 + L1Md_A LINE L1 5588 6582 0 6 1049 4393 51 206 3 chr3 60905695 60905745 -98694038 + L1_Mm LINE L1 5588 5638 -245 6 1049 31 76 0 0 chr3 60906410 60906476 -98693307 + AT_rich Low_complexity Low_complexity 1 66 0 6 1049 268 279 43 29 chr3 60907375 60907445 -98692338 - RSINE1 SINE B4 -92 73 3 6 1049 778 245 41 5 chr3 60907480 60907672 -98692111 + B3 SINE B2 1 200 -16 6 1049 459 0 0 0 chr3 60907672 60907723 -98692060 + (TAAAA)n Simple_repeat Simple_repeat 5 55 0 6 1049 615 105 23 0 chr3 60908200 60908333 -98691450 + (TTTTG)n Simple_repeat Simple_repeat 2 137 0 6 1049 4480 188 77 6 chr3 60910664 60911557 -98688226 - Lx4A LINE L1 -477 6581 5625 6 1049 1955 155 3 0 chr3 60911548 60911877 -98687906 - Lx4A LINE L1 -1497 4380 4051 6 1049 1098 246 37 12 chr3 60911853 60912210 -98687573 + Lx2B LINE L1 6554 7035 -23 6 1049 303 28 0 0 chr3 60912213 60912249 -98687534 + (GA)n Simple_repeat Simple_repeat 1 36 0 6 1049 221 0 35 0 chr3 60915066 60915095 -98684688 + (CAAA)n Simple_repeat Simple_repeat 3 32 0 6 1049 298 28 0 0 chr3 60915176 60915212 -98684571 + U2 snRNA snRNA 1 36 -152 6 1049 439 318 106 31 chr3 60915407 60915767 -98684016 + L2 LINE L2 2458 2844 -575 6 1049 724 326 28 0 chr3 60915914 60916129 -98683654 + 7SK RNA RNA 14 234 -97 6 1049 1953 119 3 7 chr3 60916524 60916828 -98682955 - Lx LINE L1 0 6654 6352 6 1049 1075 137 94 20 chr3 60916828 60917029 -98682754 - URR1A DNA MER1_type -3 223 8 6 1049 2207 135 0 0 chr3 60917533 60917860 -98681923 - ORR1A2 LTR MaLR 0 327 1 6 1049 1871 312 33 52 chr3 60918019 60918831 -98680952 + Lx9 LINE L1 6581 7377 -267 6 1049 349 20 40 0 chr3 60918841 60918891 -98680892 + (TG)n Simple_repeat Simple_repeat 2 53 0 6 1049 2986 66 0 0 chr3 60918976 60919365 -98680418 - L1Md_F2 LINE L1 -395 6187 5796 6 1049 1001 273 46 10 chr3 60919732 60920028 -98679755 - RMER19A LTR ERVK 0 902 481 6 1049 549 113 0 10 chr3 60920746 60920844 -98678939 - L1Md_F2 LINE L1 -12 6570 6474 6 1049 294 73 0 0 chr3 60921094 60921135 -98678648 + (CA)n Simple_repeat Simple_repeat 2 42 0 6 1049 616 209 0 9 chr3 60921142 60921253 -98678530 - B1_Mur4 SINE Alu -39 111 2 6 1049 463 16 31 0 chr3 60921551 60921615 -98678168 + (TG)n Simple_repeat Simple_repeat 1 66 0 6 1049 366 278 0 22 chr3 60921710 60921802 -98677981 + 5S rRNA rRNA 1 90 -31 6 1049 590 133 0 0 chr3 60924097 60924187 -98675596 - Lx4B LINE L1 -1191 5867 5778 6 1049 404 145 0 0 chr3 60924185 60924247 -98675536 + Lx4B LINE L1 5865 5926 -1132 6 1049 1415 191 44 42 chr3 60924248 60924691 -98675092 - RMER17C LTR ERVK -519 439 19 6 1049 3980 214 80 16 chr3 60924691 60925689 -98674094 + Lx4B LINE L1 5920 7054 -4 6 1049 287 336 9 26 chr3 60926282 60926395 -98673388 - ID_B1 SINE B4 -31 193 83 6 1049 28 29 0 0 chr3 60927245 60927280 -98672503 + AT_rich Low_complexity Low_complexity 1 35 0 6 1049 1730 186 25 9 chr3 60927471 60927791 -98671992 - Lx5 LINE L1 0 7050 6726 6 1049 21 36 0 0 chr3 60927798 60927826 -98671957 + AT_rich Low_complexity Low_complexity 1 28 0 6 1049 1687 231 129 30 chr3 60928683 60929242 -98670541 - Lx9 LINE L1 -34 7610 6997 6 1049 503 258 22 122 chr3 60929272 60929453 -98670330 + RSINE1 SINE B4 3 165 0 6 1049 181 192 0 240 chr3 60929737 60929833 -98669950 + L2a LINE L2 3336 3408 -18 6 1049 1085 62 28 0 chr3 60930257 60930401 -98669382 + B1_Mus1 SINE Alu 1 148 0 6 1049 24 0 0 0 chr3 60930415 60930439 -98669344 + AT_rich Low_complexity Low_complexity 1 24 0 6 1049 24 67 0 0 chr3 60930579 60930624 -98669159 + AT_rich Low_complexity Low_complexity 1 45 0 6 1049 444 344 24 0 chr3 60930731 60930856 -98668927 + B3A SINE B2 2 129 -69 6 1049 1090 247 96 16 chr3 60930964 60931277 -98668506 - MTEa LTR MaLR -1 378 41 6 1049 7491 88 23 3 chr3 60931717 60931802 -98667981 - L1_Mus4 LINE L1 0 6636 6554 6 1049 486 0 0 0 chr3 60931802 60931856 -98667927 + (CA)n Simple_repeat Simple_repeat 1 54 0 6 1049 7491 94 19 3 chr3 60931856 60933002 -98666781 - L1_Mus4 LINE L1 -83 6553 5385 6 1049 548 197 14 96 chr3 60933502 60933648 -98666135 + B1_Mm SINE Alu 2 135 -12 6 1049 246 32 0 0 chr3 60933648 60933679 -98666104 + (TAAAA)n Simple_repeat Simple_repeat 4 34 0 6 1049 211 333 65 47 chr3 60934395 60934502 -98665281 - MIRc SINE MIR -63 205 97 6 1049 351 0 0 0 chr3 60936438 60936477 -98663306 + (TG)n Simple_repeat Simple_repeat 1 39 0 6 1049 882 140 0 0 chr3 60936477 60936656 -98663127 + (GA)n Simple_repeat Simple_repeat 2 180 0 6 1049 208 225 0 0 chr3 60936656 60936696 -98663087 + (CA)n Simple_repeat Simple_repeat 1 40 0 6 1049 254 296 60 56 chr3 60937033 60937248 -98662535 + L1M5 LINE L1 4620 4835 -1311 6 1049 363 286 0 43 chr3 60937838 60937977 -98661806 - MER2 DNA MER2_type -112 233 101 6 1049 225 194 81 27 chr3 60937989 60938063 -98661720 + Lx6 LINE L1 7375 7452 -8 6 1049 441 54 0 0 chr3 60938960 60939016 -98660767 + (TATG)n Simple_repeat Simple_repeat 1 56 0 6 1049 584 27 14 0 chr3 60939016 60939090 -98660693 + (TCTA)n Simple_repeat Simple_repeat 4 78 0 6 1049 390 69 0 0 chr3 60939549 60939607 -98660176 + (TTGG)n Simple_repeat Simple_repeat 2 59 0 6 1049 607 277 194 10 chr3 60940106 60940775 -98659008 + L1M2 LINE L1 4554 5345 -798 6 1049 180 0 0 0 chr3 60940800 60940820 -98658963 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 6 1049 611 273 35 31 chr3 60940883 60941110 -98658673 + L1M2 LINE L1 5474 5701 -590 6 1049 383 195 102 11 chr3 60941120 60941208 -98658575 + MTC LTR MaLR 1 96 -300 6 1049 1224 214 162 0 chr3 60941780 60942139 -98657644 - MTD LTR MaLR 0 419 3 6 1049 1037 256 64 29 chr3 60942510 60942824 -98656959 + Lx6 LINE L1 7109 7433 -27 6 1049 252 269 15 0 chr3 60942897 60942964 -98656819 + MER21B LTR ERV1 648 715 -148 6 1049 305 221 30 59 chr3 60943364 60943465 -98656318 - MTEa LTR MaLR -7 372 262 6 1049 684 374 43 53 chr3 60943621 60944014 -98655769 - MT2A LTR ERVL -144 389 1 6 1049 202 102 0 93 chr3 60944064 60944118 -98655665 + (TACTG)n Simple_repeat Simple_repeat 2 50 0 6 1049 2979 74 5 8 chr3 60944167 60944562 -98655221 - MTA_Mm LTR MaLR -2 394 1 6 1049 1307 73 0 0 chr3 60944579 60944757 -98655026 + L1_Mus2 LINE L1 5974 6151 -415 6 1049 380 327 139 13 chr3 60944875 60945033 -98654750 + MLT1F-int LTR MaLR 1311 1488 -1 6 1049 615 297 78 28 chr3 60945109 60945327 -98654456 + B4A SINE B4 1 229 -63 6 1049 533 175 52 17 chr3 60945348 60945464 -98654319 - MTD LTR MaLR -13 406 287 6 1049 564 300 64 118 chr3 60945464 60945778 -98654005 - MTD LTR MaLR -83 317 19 6 1049 804 194 183 0 chr3 60945927 60946053 -98653730 - URR1A DNA MER1_type 0 226 99 6 1049 408 40 0 0 chr3 60946053 60946103 -98653680 + (TA)n Simple_repeat Simple_repeat 2 51 0 6 1049 804 194 183 0 chr3 60946103 60946167 -98653616 - URR1A DNA MER1_type -128 98 2 6 1049 25 31 0 0 chr3 60946402 60946434 -98653349 + AT_rich Low_complexity Low_complexity 1 32 0 6 1049 238 274 54 89 chr3 60947029 60947141 -98652642 + RLTR25B LTR ERVK 402 509 -519 6 1049 639 94 20 20 chr3 60947084 60947182 -98652601 + B1_Mm SINE Alu 48 145 -2 6 1049 275 49 24 0 chr3 60947195 60947236 -98652547 + (CAAA)n Simple_repeat Simple_repeat 3 44 0 6 1049 554 334 182 30 chr3 60947313 60947836 -98651947 + L2 LINE L2 2014 2585 -834 6 1049 243 0 0 0 chr3 60947836 60947863 -98651920 + (TG)n Simple_repeat Simple_repeat 2 28 0 6 1049 554 334 182 30 chr3 60947863 60948256 -98651527 + L2 LINE L2 2586 3069 -350 6 1050 1402 250 33 66 chr3 60948525 60949073 -98650710 + L1_Rod LINE L1 3975 4504 -1343 6 1050 5008 151 33 12 chr3 60949059 60950030 -98649753 - Lx2B LINE L1 -331 5555 4565 6 1050 608 121 21 1 chr3 60950031 60950141 -98649642 + Lx2B LINE L1 5534 5645 -235 6 1050 6346 178 56 8 chr3 60950659 60951955 -98647828 + Lx2B LINE L1 5639 6996 -4 6 1050 550 212 37 154 chr3 60951949 60952222 -98647561 + Lx9 LINE L1 4488 4728 -1119 6 1050 21661 75 201 6 chr3 60952247 60956554 -98643229 + L1Md_F3 LINE L1 441 5585 -298 6 1050 8004 51 3 0 chr3 60956555 60957549 -98642234 + L1Md_F3 LINE L1 5587 6583 -1 6 1050 3302 221 86 32 chr3 60957554 60957718 -98642065 + Lx9 LINE L1 4738 4928 -919 6 1050 182 62 31 0 chr3 60957718 60957750 -98642033 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 6 1050 3302 235 72 32 chr3 60957750 60958856 -98640927 + Lx9 LINE L1 4929 6091 -1553 6 1050 4028 240 37 14 chr3 60958957 60959980 -98639803 + Lx9 LINE L1 6341 7387 -257 6 1050 189 0 0 0 chr3 60959980 60960001 -98639782 + (TG)n Simple_repeat Simple_repeat 1 21 0 6 1050 914 206 47 0 chr3 60960002 60960216 -98639567 + Lx7 LINE L1 6763 6986 -710 6 1050 2939 113 36 0 chr3 60960386 60960864 -98638919 + MusHAL1 LINE L1 982 1476 -1236 6 1050 306 0 0 0 chr3 60961135 60961169 -98638614 + (CA)n Simple_repeat Simple_repeat 1 34 0 6 1050 317 123 0 0 chr3 60962010 60962067 -98637716 - B3 SINE B2 -3 213 157 6 1050 558 0 0 0 chr3 60963510 60963572 -98636211 + (TC)n Simple_repeat Simple_repeat 1 62 0 6 1050 756 310 33 5 chr3 60964640 60964851 -98634932 + ID_B1 SINE B4 4 220 -4 6 1050 244 298 67 37 chr3 60964734 60964898 -98634885 - YREP_Mm Unknown Unknown -1516 296 128 6 1050 1094 69 7 7 chr3 60964901 60965047 -98634736 + B1_Mm SINE Alu 2 147 0 6 1050 249 155 0 0 chr3 60965048 60965106 -98634677 + A-rich Low_complexity Low_complexity 1 58 0 6 1050 3540 217 132 13 chr3 60966160 60967739 -98632044 - Lx7 LINE L1 -661 7035 5199 6 1050 5998 191 55 7 chr3 60967737 60969247 -98630536 - Lx7 LINE L1 -1730 4150 2568 6 1050 3617 192 42 22 chr3 60969228 60970540 -98629243 - Lx7 LINE L1 -4172 1708 378 6 1050 208 208 27 14 chr3 60970820 60970880 -98628903 + (TA)n Simple_repeat Simple_repeat 1 61 0 7 1050 3095 75 0 2 chr3 60970880 60971281 -98628502 - MTB LTR MaLR 0 400 1 7 1050 208 208 27 14 chr3 60971281 60971293 -98628490 + (TA)n Simple_repeat Simple_repeat 1 12 0 7 1050 207 85 64 0 chr3 60971306 60971353 -98628430 + (TAGA)n Simple_repeat Simple_repeat 4 53 0 7 1050 350 292 18 62 chr3 60971396 60971509 -98628274 - PB1D10 SINE Alu -9 108 1 7 1050 231 250 17 0 chr3 60971764 60971824 -98627959 - L1M5 LINE L1 -299 5825 5765 7 1050 405 0 0 0 chr3 60972871 60972916 -98626867 + (CA)n Simple_repeat Simple_repeat 2 46 0 7 1050 351 0 0 0 chr3 60973438 60973477 -98626306 + (TG)n Simple_repeat Simple_repeat 2 40 0 7 1050 7197 65 8 3 chr3 60973491 60974519 -98625264 - L1Md_F2 LINE L1 -10 6572 5537 7 1050 208 323 16 0 chr3 60974706 60974768 -98625015 + L2a LINE L2 3343 3405 -21 7 1050 33692 37 0 0 chr3 60975644 60980882 -98618901 + L1Md_T LINE L1 255 5589 -297 7 1050 8947 7 2 0 chr3 60980882 60981876 -98617907 + L1Md_T LINE L1 5590 6585 0 7 1050 1499 265 77 3 chr3 60982338 60982713 -98617070 + MTC LTR MaLR 1 403 -18 7 1050 363 132 0 0 chr3 60982722 60982790 -98616993 + (TTTC)n Simple_repeat Simple_repeat 2 69 0 7 1050 213 39 0 0 chr3 60982791 60982817 -98616966 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 7 1050 1331 256 49 31 chr3 60982907 60983358 -98616425 + Lx6 LINE L1 5817 6272 -1188 7 1050 1065 218 153 30 chr3 60983358 60983715 -98616068 + Lx6 LINE L1 6479 6900 -560 7 1050 1194 145 72 32 chr3 60983897 60984118 -98615665 - Lx4A LINE L1 -3 7055 6826 7 1050 7730 37 2 1 chr3 60984132 60985702 -98614081 - L1Md_F3 LINE L1 -14 6570 4999 7 1050 13931 37 1 2 chr3 60985702 60987490 -98612293 + L1Md_F3 LINE L1 3213 4999 -884 7 1050 6124 137 37 6 chr3 60987483 60988542 -98611241 - Lx4A LINE L1 -217 6841 5750 7 1050 24 0 0 0 chr3 60989084 60989108 -98610675 + AT_rich Low_complexity Low_complexity 1 24 0 7 1050 1157 350 54 54 chr3 60989158 60989675 -98610108 - MLT2B3 LTR ERVL -16 538 22 7 1050 273 29 0 0 chr3 60989755 60989789 -98609994 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 7 1050 180 111 0 0 chr3 60990617 60990644 -98609139 + (GGA)n Simple_repeat Simple_repeat 2 28 0 7 1050 453 19 0 0 chr3 60990840 60990894 -98608889 + (TAGA)n Simple_repeat Simple_repeat 4 57 0 7 1050 225 361 0 0 chr3 60991488 60991549 -98608234 - ID4_ SINE ID -20 63 3 7 1050 258 306 12 0 chr3 60992084 60992169 -98607614 + MTEa LTR MaLR 1 86 -293 7 1050 751 289 98 26 chr3 60992233 60992539 -98607244 + MT2A LTR ERVL 206 533 0 7 1050 288 167 0 0 chr3 60993190 60993262 -98606521 + GA-rich Low_complexity Low_complexity 1 72 0 7 1050 1316 174 47 30 chr3 60993339 60993636 -98606147 - Lx5 LINE L1 -3 7047 6746 7 1050 484 202 0 10 chr3 60993644 60993744 -98606039 - Lx5 LINE L1 -446 6604 6506 7 1050 409 157 0 11 chr3 60993750 60993840 -98605943 - L1Md_F3 LINE L1 -2 6582 6494 7 1050 1734 106 16 0 chr3 60993844 60994098 -98605685 + L1_Mm LINE L1 5466 5723 -160 7 1050 5192 152 21 17 chr3 60994086 60995731 -98604052 - Lx5 LINE L1 -535 6515 4857 7 1050 3348 137 7 7 chr3 60995729 60996287 -98603496 - L1_Mm LINE L1 -81 5802 5245 7 1050 4002 96 26 3 chr3 60996287 60996861 -98602922 + L1_Mus3 LINE L1 6051 6637 -1 7 1050 298 173 0 0 chr3 60996959 60997011 -98602772 - Lx5 LINE L1 -2343 3537 3486 7 1050 207 69 0 0 chr3 60997014 60997043 -98602740 + (TTTG)n Simple_repeat Simple_repeat 3 31 0 7 1050 4672 157 323 16 chr3 60997044 60998065 -98601718 - Lx5 LINE L1 -2605 3272 1994 7 1050 435 19 0 0 chr3 60998065 60998117 -98601666 + (TG)n Simple_repeat Simple_repeat 2 53 0 7 1050 4672 169 236 22 chr3 60998117 60998948 -98600835 - Lx5 LINE L1 -3884 1993 874 7 1050 1051 72 20 0 chr3 60999845 60999997 -98599786 + L1Md_F2 LINE L1 5934 6088 -494 7 1050 3433 74 21 0 chr3 61000000 61000473 -98599310 + L1_Mus1 LINE L1 6085 6567 0 1 1050 3232 131 31 0 chr3 61000476 61001018 -98598765 + MusHAL1 LINE L1 5 563 -2791 2 1050 5319 107 53 26 chr3 61001017 61002495 -98597288 + L1VL2 LINE L1 165 1680 -1935 3 1050 2579 93 3 0 chr3 61002492 61002877 -98596906 + L1VL2 LINE L1 2102 2487 -1128 3 1050 3993 109 31 26 chr3 61003408 61003558 -98596225 - L1Md_F LINE L1 -5412 1207 993 4 1050 1587 47 0 0 chr3 61003558 61003748 -98596035 - B2_Mm1t SINE B2 -3 190 1 5 1050 3993 101 44 36 chr3 61003748 61004304 -98595479 - L1Md_F LINE L1 -5497 1122 538 4 1050 8957 168 21 16 chr3 61004305 61006090 -98593693 + L1_Mur2 LINE L1 4084 5877 0 6 1050 2510 176 93 0 chr3 61006110 61006615 -98593168 + Lx LINE L1 6096 6647 -7 7 1050 21 36 0 0 chr3 61006668 61006696 -98593087 + AT_rich Low_complexity Low_complexity 1 28 0 8 1050 1893 274 59 26 chr3 61006701 61007511 -98592272 + Lx8 LINE L1 5085 5954 -1690 9 1050 394 287 278 14 chr3 61008280 61008640 -98591143 + RMER5 LTR ERV1 41 495 -39 1 1050 472 284 74 7 chr3 61008748 61008897 -98590886 + RSINE1 SINE B4 3 161 -4 1 1050 316 312 71 20 chr3 61008911 61009145 -98590638 + L1MC LINE L1 3127 3367 -2776 1 1050 1029 240 14 0 chr3 61009145 61009353 -98590430 + B3 SINE B2 1 211 -5 1 1050 320 170 30 50 chr3 61009353 61009452 -98590331 - Lx9 LINE L1 -7 7637 7541 1 1050 437 232 36 0 chr3 61009450 61009562 -98590221 + Lx9 LINE L1 7335 7450 -194 1 1050 29 47 0 0 chr3 61009699 61009742 -98590041 + AT_rich Low_complexity Low_complexity 1 43 0 1 1050 859 197 101 2 chr3 61010269 61010477 -98589306 + MTD LTR MaLR 1 211 -208 1 1050 31205 98 11 8 chr3 61010579 61016111 -98583672 + L1Md_F2 LINE L1 35 5586 -297 1 1050 7983 55 1 0 chr3 61016112 61017103 -98582680 + L1Md_F2 LINE L1 5588 6579 -3 1 1050 2519 49 3 0 chr3 61017133 61017462 -98582321 + L1Md_F2 LINE L1 5256 5585 -298 1 1050 7571 70 3 10 chr3 61017463 61018466 -98581317 + L1Md_F2 LINE L1 5587 6582 0 1 1050 628 220 186 0 chr3 61018466 61018643 -98581140 + MTD LTR MaLR 196 405 -14 1 1050 450 0 0 0 chr3 61018656 61018706 -98581077 + (TGAG)n Simple_repeat Simple_repeat 3 52 0 1 1050 820 282 61 29 chr3 61018773 61019018 -98580765 - B4A SINE B4 -30 262 10 2 1050 564 301 141 62 chr3 61020089 61020379 -98579404 + MLT1A LTR MaLR 32 344 -30 2 1050 384 346 23 42 chr3 61021861 61022075 -98577708 - Lx8 LINE L1 -86 7387 7178 2 1050 3389 294 41 19 chr3 61022199 61023378 -98576405 + Lx7 LINE L1 6108 7312 -384 2 1050 218 214 47 12 chr3 61023431 61023516 -98576267 + (TTTG)n Simple_repeat Simple_repeat 1 88 0 2 1050 951 230 55 79 chr3 61024077 61024638 -98575145 + L1_Mur2 LINE L1 892 1382 -4498 2 1050 613 343 4 16 chr3 61024636 61024879 -98574904 + Lx6 LINE L1 7194 7433 -27 2 1050 250 300 33 79 chr3 61026054 61026074 -98573709 + RMER19C LTR ERVK 110 124 -613 2 1050 390 21 0 0 chr3 61026074 61026121 -98573662 + (CATGT)n Simple_repeat Simple_repeat 3 49 0 2 1050 1954 244 19 46 chr3 61026121 61026614 -98573169 + RMER19C LTR ERVK 125 611 0 2 1050 75 0 0 0 chr3 61027307 61027382 -98572401 + AT_rich Low_complexity Low_complexity 1 75 0 2 1050 2778 217 66 118 chr3 61027382 61027987 -98571796 - RMER19B LTR ERVK -105 797 228 3 1050 835 108 0 61 chr3 61027987 61028135 -98571648 - L1Md_F2 LINE L1 -3 6579 6441 3 1050 2778 222 66 103 chr3 61028135 61028341 -98571442 - RMER19B LTR ERVK -675 227 49 3 1050 536 53 13 0 chr3 61028894 61028970 -98570813 + (TAGA)n Simple_repeat Simple_repeat 1 77 0 3 1050 228 67 0 0 chr3 61029255 61029285 -98570498 + (TG)n Simple_repeat Simple_repeat 2 31 0 3 1050 387 0 0 0 chr3 61029546 61029589 -98570194 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 1050 653 242 62 25 chr3 61029592 61029753 -98570030 - B3A SINE B2 -30 168 2 3 1050 1154 62 7 0 chr3 61030586 61030732 -98569051 + B1_Mm SINE Alu 1 147 0 3 1050 25 51 0 0 chr3 61031054 61031093 -98568690 + AT_rich Low_complexity Low_complexity 1 39 0 3 1050 5352 69 4 3 chr3 61031892 61032647 -98567136 + L1Md_A LINE L1 450 1205 -5519 3 1050 8671 27 0 0 chr3 61032624 61033795 -98565988 + L1Md_A LINE L1 1141 2311 -3572 3 1050 3648 39 2 0 chr3 61033795 61034261 -98565522 + L1Md_T LINE L1 6140 6582 0 3 1050 635 196 60 0 chr3 61036708 61036841 -98562942 - B1_Mur2 SINE Alu -8 141 1 4 1050 456 285 130 0 chr3 61037450 61037573 -98562210 + B3A SINE B2 1 139 -59 4 1050 342 0 0 0 chr3 61037592 61037630 -98562153 + (CA)n Simple_repeat Simple_repeat 1 38 0 4 1050 333 0 0 0 chr3 61038465 61038502 -98561281 + (T)n Simple_repeat Simple_repeat 1 37 0 4 1050 456 296 13 58 chr3 61039316 61039470 -98560313 - B4 SINE B4 -80 212 66 4 1050 3607 157 70 68 chr3 61040871 61041776 -98558007 - RMER17A2 LTR ERVK 0 906 1 4 1050 1345 143 0 0 chr3 61042032 61042249 -98557534 - Lx2 LINE L1 -6 6991 6775 4 1050 1367 104 0 58 chr3 61042249 61042410 -98557373 - Lx2 LINE L1 -354 6643 6484 4 1050 3454 30 2 0 chr3 61042410 61042805 -98556978 - MTA_Mm LTR MaLR 0 396 1 4 1050 9053 40 4 0 chr3 61042805 61043899 -98555884 - MTA_Mm-int LTR MaLR 0 1098 1 4 1050 3464 25 2 0 chr3 61043899 61044294 -98555489 - MTA_Mm LTR MaLR 0 396 1 4 1050 1367 104 0 58 chr3 61044294 61044354 -98555429 - Lx2 LINE L1 -514 6483 6435 4 1050 956 141 0 99 chr3 61044346 61044558 -98555225 + Lx2 LINE L1 6190 6380 -617 4 1050 187 309 181 0 chr3 61045688 61045782 -98554001 - MIR SINE MIR -78 184 74 4 1050 315 239 130 63 chr3 61046339 61046536 -98553247 + MTEa LTR MaLR 153 378 -1 4 1050 342 0 0 0 chr3 61047091 61047129 -98552654 + (GTTTG)n Simple_repeat Simple_repeat 3 40 0 5 1050 1148 302 89 8 chr3 61049912 61050273 -98549510 - ORR1E-int LTR MaLR -1190 390 1 5 1050 793 280 160 19 chr3 61050276 61050589 -98549194 - ORR1E LTR MaLR -2 357 1 5 1050 225 336 139 22 chr3 61051093 61051230 -98548553 + MER96 DNA hAT 5 157 -18 5 1050 396 0 0 0 chr3 61051488 61051532 -98548251 + (TG)n Simple_repeat Simple_repeat 2 45 0 5 1050 353 268 0 14 chr3 61052593 61052737 -98547046 + GA-rich Low_complexity Low_complexity 3 144 0 5 1050 228 185 18 18 chr3 61052935 61052990 -98546793 - PB1D7 SINE Alu 0 120 66 5 1050 429 20 0 0 chr3 61053276 61053326 -98546457 + (TG)n Simple_repeat Simple_repeat 2 51 0 5 1050 1362 23 6 11 chr3 61053596 61053772 -98546011 + (TCTCCC)n Simple_repeat Simple_repeat 2 176 0 5 1050 318 148 0 0 chr3 61053772 61053826 -98545957 + (TCTCC)n Simple_repeat Simple_repeat 2 55 0 5 1050 672 193 162 45 chr3 61053827 61054006 -98545777 + ORR1C2 LTR MaLR 174 373 -11 5 1050 409 242 105 3 chr3 61054072 61054190 -98545593 - MTC LTR MaLR -7 412 295 6 1050 1952 164 68 30 chr3 61054190 61054619 -98545164 - BGLII_A LTR ERVK 0 445 1 6 1050 2346 214 79 45 chr3 61054624 61055334 -98544449 - RMER3D-int LTR ERVK -5 2837 2104 6 1050 1639 94 21 0 chr3 61055339 61055623 -98544160 + L1_Mus1 LINE L1 6324 6567 0 6 1050 1166 55 14 0 chr3 61055794 61055939 -98543844 + B1_Mm SINE Alu 1 147 0 6 1050 7457 67 4 2 chr3 61056051 61057769 -98542014 - L1_Mus1 LINE L1 0 6654 4856 6 1050 1869 215 85 10 chr3 61057774 61058057 -98541726 - RCHARR1 DNA MER1_type 0 974 667 6 1050 3443 89 6 11 chr3 61058057 61058534 -98541249 + MT2C_Mm LTR ERVL 1 475 0 6 1050 1869 236 276 11 chr3 61058534 61059062 -98540721 - RCHARR1 DNA MER1_type -308 666 3 6 1050 507 273 14 0 chr3 61060043 61060182 -98539601 - L1MA6 LINE L1 -30 6270 6130 6 1050 995 112 0 27 chr3 61060215 61060398 -98539385 + (TTTC)n Simple_repeat Simple_repeat 1 178 0 6 1050 483 18 0 0 chr3 61060398 61060454 -98539329 + (TCCC)n Simple_repeat Simple_repeat 2 57 0 6 1050 753 76 0 0 chr3 61060454 61060559 -98539224 + (TTTC)n Simple_repeat Simple_repeat 1 105 0 7 1050 261 57 0 0 chr3 61060654 61060689 -98539094 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 7 1050 204 154 0 25 chr3 61060883 61060923 -98538860 + (ATTG)n Simple_repeat Simple_repeat 2 40 0 7 1050 693 285 43 11 chr3 61060977 61061355 -98538428 - Lx6 LINE L1 -711 6749 6114 7 1050 865 302 85 29 chr3 61061536 61062399 -98537384 - L1MA6 LINE L1 -310 5990 5072 6 1050 470 254 244 8 chr3 61062449 61062699 -98537084 - L1MA6 LINE L1 -1426 4717 4409 6 1050 282 304 0 55 chr3 61062803 61062876 -98536907 - RSINE1 SINE B4 -18 147 79 7 1050 506 298 40 0 chr3 61062899 61063127 -98536656 - L1MD2 LINE L1 -2 6357 6121 7 1050 389 346 118 17 chr3 61063223 61063461 -98536322 - L1MD2 LINE L1 -561 5798 5537 7 1050 1000 291 79 38 chr3 61063643 61064036 -98535747 + MTE-int LTR MaLR 141 549 -1031 7 1050 1955 281 78 5 chr3 61064026 61064580 -98535203 + MTE-int LTR MaLR 983 1576 -4 7 1050 4294 145 29 35 chr3 61064619 61065524 -98534259 + L1Md_T LINE L1 307 1205 -5411 7 1050 34796 32 0 0 chr3 61065526 61069947 -98529836 + L1Md_T LINE L1 1166 5586 -297 7 1050 8016 56 0 0 chr3 61069947 61070943 -98528840 + L1Md_T LINE L1 5587 6582 0 7 1050 708 70 0 0 chr3 61070943 61071043 -98528740 + L1_Mus1 LINE L1 6465 6564 -3 7 1050 269 155 28 0 chr3 61071111 61071182 -98528601 + (TCTCTG)n Simple_repeat Simple_repeat 6 78 0 7 1050 210 246 0 0 chr3 61071179 61071240 -98528543 + (TG)n Simple_repeat Simple_repeat 2 62 0 8 1050 846 309 68 43 chr3 61071282 61071563 -98528220 + MTEb LTR MaLR 84 371 -8 8 1050 2889 6 5 149 chr3 61073316 61073745 -98526038 - IAPLTR1_Mm LTR ERVK 0 367 1 8 1050 27811 17 1 1 chr3 61073745 61077019 -98522764 - IAPEz-int LTR ERVK 0 6481 3210 8 1050 6437 87 128 36 chr3 61077018 61078210 -98521573 - IAPEz-int LTR ERVK -5168 1313 67 8 1050 916 86 167 0 chr3 61078181 61078343 -98521440 - IAPEz-int LTR ERVK -6285 196 8 8 1050 2889 6 5 149 chr3 61078343 61078772 -98521011 - IAPLTR1_Mm LTR ERVK 0 367 1 8 1050 320 214 11 22 chr3 61078784 61078875 -98520908 + G-rich Low_complexity Low_complexity 6 95 0 8 1050 305 221 25 49 chr3 61079009 61079090 -98520693 + ID4_ SINE ID 5 83 0 8 1050 205 211 0 55 chr3 61079169 61079224 -98520559 + (TATATG)n Simple_repeat Simple_repeat 2 53 0 8 1051 294 376 54 38 chr3 61080155 61080340 -98519443 + MIR SINE MIR 35 222 -40 8 1051 282 420 34 10 chr3 61080735 61080944 -98518839 - MIRb SINE MIR -54 214 1 8 1051 677 247 232 26 chr3 61081098 61081446 -98518337 + MTD LTR MaLR 1 419 0 8 1051 700 279 78 38 chr3 61081525 61081845 -98517938 + RLTR15 LTR ERVK 1 333 -26 8 1051 516 351 17 52 chr3 61082233 61082524 -98517259 - B4A SINE B4 -10 282 2 9 1051 490 311 8 16 chr3 61082528 61082652 -98517131 - B4A SINE B4 -72 220 98 9 1051 21 0 0 0 chr3 61083052 61083073 -98516710 + AT_rich Low_complexity Low_complexity 1 21 0 9 1051 243 0 0 0 chr3 61085584 61085611 -98514172 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 9 1051 959 114 17 6 chr3 61085645 61085821 -98513962 + (GGGAGA)n Simple_repeat Simple_repeat 3 180 0 9 1051 740 266 32 5 chr3 61085898 61086087 -98513696 + B3A SINE B2 2 195 -3 9 1051 878 76 0 25 chr3 61086084 61086206 -98513577 + B1_Mus1 SINE Alu 28 146 -2 9 1051 495 0 0 0 chr3 61086206 61086261 -98513522 + (TA)n Simple_repeat Simple_repeat 1 55 0 9 1051 270 0 0 0 chr3 61086261 61086290 -98513493 + (GA)n Simple_repeat Simple_repeat 2 31 0 9 1051 951 143 37 47 chr3 61087353 61087544 -98512239 + B2_Mm2 SINE B2 1 189 -6 9 1051 753 230 206 47 chr3 61088444 61088491 -98511292 - MTEa LTR MaLR -4 375 327 1 1051 477 50 0 0 chr3 61088491 61088551 -98511232 + (TGGA)n Simple_repeat Simple_repeat 3 62 0 1 1051 983 147 6 0 chr3 61088557 61088734 -98511049 + GA-rich Low_complexity Low_complexity 1 178 0 1 1051 348 24 0 0 chr3 61088736 61088777 -98511006 + (GGGA)n Simple_repeat Simple_repeat 1 41 0 1 1051 753 230 206 47 chr3 61088777 61089039 -98510744 - MTEa LTR MaLR -59 320 9 1 1051 444 104 0 0 chr3 61089240 61089307 -98510476 + (TG)n Simple_repeat Simple_repeat 2 68 0 1 1051 22 35 0 0 chr3 61090621 61090650 -98509133 + AT_rich Low_complexity Low_complexity 1 29 0 1 1051 843 291 144 9 chr3 61090699 61091018 -98508765 + ORR1D2 LTR MaLR 1 362 -8 1 1051 387 0 0 0 chr3 61091274 61091317 -98508466 + (TG)n Simple_repeat Simple_repeat 1 43 0 1 1051 29 0 0 0 chr3 61091365 61091394 -98508389 + AT_rich Low_complexity Low_complexity 1 29 0 1 1051 561 30 0 0 chr3 61091634 61091701 -98508082 + (TTCTC)n Simple_repeat Simple_repeat 1 67 0 1 1051 1209 98 0 0 chr3 61091703 61091877 -98507906 + (TCCCC)n Simple_repeat Simple_repeat 3 176 0 1 1051 1822 188 33 14 chr3 61092218 61092585 -98507198 - ORR1D1 LTR MaLR 0 374 1 1 1051 369 274 42 10 chr3 61092704 61092800 -98506983 + PB1 SINE Alu 22 120 -7 1 1051 219 69 0 0 chr3 61092803 61092832 -98506951 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 1 1051 233 322 35 0 chr3 61093155 61093242 -98506541 - MIRc SINE MIR -60 208 119 1 1051 43 47 0 0 chr3 61093583 61093647 -98506136 + AT_rich Low_complexity Low_complexity 1 64 0 1 1051 375 333 0 0 chr3 61094622 61094709 -98505074 - PB1D10 SINE Alu -23 94 8 1 1051 612 27 0 0 chr3 61095546 61095620 -98504163 + (CA)n Simple_repeat Simple_repeat 2 75 0 1 1051 734 259 30 10 chr3 61095841 61096044 -98503739 + B3 SINE B2 1 207 -9 1 1051 28 0 0 0 chr3 61096044 61096072 -98503711 + AT_rich Low_complexity Low_complexity 1 28 0 1 1051 415 218 72 43 chr3 61096085 61096224 -98503559 - B1F SINE Alu 0 149 7 1 1051 440 269 15 51 chr3 61096099 61096236 -98503547 - ID_B1 SINE B4 -14 210 79 1 1051 234 81 0 0 chr3 61096882 61096919 -98502864 + (T)n Simple_repeat Simple_repeat 1 37 0 1 1051 809 251 23 11 chr3 61097006 61097183 -98502600 + B3 SINE B2 31 209 -7 1 1051 617 266 68 29 chr3 61097209 61097414 -98502369 + B3 SINE B2 4 216 0 1 1051 613 286 83 29 chr3 61097795 61098000 -98501783 + B3 SINE B2 1 216 0 1 1051 24 0 0 0 chr3 61098005 61098029 -98501754 + AT_rich Low_complexity Low_complexity 1 24 0 1 1051 255 297 0 21 chr3 61098029 61098122 -98501661 + Lx8 LINE L1 7202 7292 -181 1 1051 671 65 11 0 chr3 61098155 61098248 -98501535 + (TTTC)n Simple_repeat Simple_repeat 2 95 0 1 1051 378 0 0 0 chr3 61099324 61099366 -98500417 + (TG)n Simple_repeat Simple_repeat 2 43 0 1 1051 659 241 63 29 chr3 61099421 61099596 -98500187 - B4 SINE B4 -6 286 106 1 1051 234 360 16 66 chr3 61099491 61099613 -98500170 - B1_Mur4 SINE Alu -26 124 9 1 1051 226 328 21 50 chr3 61100771 61100912 -98498871 + MLT1A0 LTR MaLR 1 137 -228 1 1051 463 294 86 97 chr3 61100936 61101215 -98498568 + ORR1E LTR MaLR 64 339 -20 1 1051 192 259 78 69 chr3 61101803 61101919 -98497864 + L3 LINE CR1 2787 2903 -1586 1 1051 248 152 0 21 chr3 61102061 61102108 -98497675 - L2 LINE L2 -855 2564 2519 1 1051 1280 27 0 0 chr3 61102532 61102679 -98497104 + B1_Mm SINE Alu 1 147 0 1 1051 192 179 0 0 chr3 61102679 61102718 -98497065 + A-rich Low_complexity Low_complexity 1 39 0 1 1051 185 374 40 20 chr3 61102992 61103093 -98496690 - L2b LINE L2 -81 3294 3192 1 1051 294 325 6 83 chr3 61103771 61103952 -98495831 + RMER10A LTR ERVL 128 294 -148 1 1051 346 265 17 54 chr3 61105117 61105300 -98494483 - L1_Mur3 LINE L1 -1873 3974 3795 1 1051 23 0 0 0 chr3 61108430 61108453 -98491330 + AT_rich Low_complexity Low_complexity 1 23 0 1 1051 353 276 19 0 chr3 61108623 61108728 -98491055 - MER5A DNA MER1_type -74 115 9 1 1051 239 133 0 22 chr3 61109489 61109535 -98490248 + CT-rich Low_complexity Low_complexity 3 47 0 1 1051 194 0 39 0 chr3 61110691 61110717 -98489066 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 1 1051 1257 20 7 0 chr3 61110722 61110868 -98488915 - B1_Mm SINE Alu 0 147 1 1 1051 252 0 0 0 chr3 61110915 61110943 -98488840 + (TTTA)n Simple_repeat Simple_repeat 1 28 0 1 1051 3346 87 31 17 chr3 61110943 61111423 -98488360 - Lx3A LINE L1 -15 6966 6480 1 1051 1032 66 5 133 chr3 61111423 61111634 -98488149 + L1_Mur1 LINE L1 5135 5318 -568 1 1051 222 91 0 0 chr3 61112192 61112225 -98487558 + (CAAAG)n Simple_repeat Simple_repeat 2 34 0 1 1051 31 0 0 0 chr3 61112723 61112754 -98487029 + AT_rich Low_complexity Low_complexity 1 31 0 1 1051 24 0 0 0 chr3 61113414 61113438 -98486345 + AT_rich Low_complexity Low_complexity 1 24 0 1 1051 308 239 52 42 chr3 61113440 61113536 -98486247 - MER121 Unknown Unknown -239 173 77 1 1051 24 32 0 0 chr3 61113714 61113745 -98486038 + AT_rich Low_complexity Low_complexity 1 31 0 1 1051 949 261 173 48 chr3 61113982 61114502 -98485281 - LTR82A LTR ERVL -162 710 126 1 1051 233 329 35 23 chr3 61115199 61115286 -98484497 - MIRb SINE MIR -8 260 173 1 1051 450 0 0 0 chr3 61115334 61115384 -98484399 + (TG)n Simple_repeat Simple_repeat 1 50 0 1 1051 304 311 99 54 chr3 61115623 61115844 -98483939 - MER21B LTR ERV1 -210 653 423 1 1051 395 260 64 70 chr3 61116387 61116544 -98483239 + MLT1B LTR MaLR 22 177 -213 1 1051 988 210 247 17 chr3 61116620 61116920 -98482863 - ORR1D1 LTR MaLR -2 372 4 1 1051 226 295 77 62 chr3 61116920 61117047 -98482736 + MLT1B LTR MaLR 258 386 -4 1 1051 216 0 0 0 chr3 61117735 61117759 -98482024 + (T)n Simple_repeat Simple_repeat 1 24 0 1 1051 236 339 173 49 chr3 61117834 61118163 -98481620 + L2a LINE L2 3027 3396 -30 1 1051 215 319 29 0 chr3 61118284 61118353 -98481430 - BC1_Mm scRNA scRNA -57 95 25 1 1051 180 77 0 0 chr3 61119263 61119289 -98480494 + (TTCA)n Simple_repeat Simple_repeat 4 29 0 1 1051 487 256 46 8 chr3 61119970 61120100 -98479683 - MER5A1 DNA MER1_type -6 160 26 1 1051 319 213 16 0 chr3 61120362 61120423 -98479360 - ID SINE ID -140 84 23 1 1051 313 254 0 15 chr3 61120363 61120431 -98479352 - ID4 SINE ID -2 81 15 1 1051 835 323 62 25 chr3 61121613 61121987 -98477796 - MLT2D LTR ERVL -20 539 6 1 1051 952 196 73 30 chr3 61123198 61123400 -98476383 - B3 SINE B2 -6 210 23 1 1051 235 259 30 141 chr3 61124319 61124517 -98475266 - MTEb LTR MaLR 0 379 204 1 1051 183 355 35 35 chr3 61126174 61126265 -98473518 + L2b LINE L2 3227 3340 -35 1 1051 191 43 0 0 chr3 61126265 61126288 -98473495 + MIRb SINE MIR 215 237 -31 1 1051 303 238 24 36 chr3 61126699 61126782 -98473001 - ID4_ SINE ID 0 83 2 1 1051 22 56 0 0 chr3 61126943 61126979 -98472804 + AT_rich Low_complexity Low_complexity 1 36 0 1 1051 1530 184 91 13 chr3 61127651 61127949 -98471834 + MTC LTR MaLR 1 321 -100 1 1051 457 234 77 26 chr3 61127950 61128144 -98471639 + MT2B LTR ERVL 1 206 -327 1 1051 8346 179 95 12 chr3 61128147 61131026 -98468757 + MERVL_2A-int LTR ERVL 1977 5095 -666 1 1051 2456 58 6 0 chr3 61131026 61131338 -98468445 + L1Md_F3 LINE L1 6270 6583 -1 1 1051 3370 186 123 39 chr3 61131338 61131673 -98468110 + MERVL_2A-int LTR ERVL 5096 5457 -304 1 1051 345 102 0 0 chr3 61131733 61131792 -98467991 + (CATA)n Simple_repeat Simple_repeat 2 60 0 1 1051 184 372 75 25 chr3 61132413 61132493 -98467290 + MIRc SINE MIR 20 103 -165 1 1051 641 140 18 27 chr3 61133295 61133405 -98466378 + B1_Mur4 SINE Alu 29 137 -13 1 1051 183 42 0 0 chr3 61133407 61133431 -98466352 + (CAAA)n Simple_repeat Simple_repeat 4 27 0 1 1051 730 231 69 49 chr3 61133487 61133733 -98466050 + L1_Mur3 LINE L1 5483 5733 -147 1 1051 180 345 50 33 chr3 61134109 61134289 -98465494 + L2 LINE L2 2221 2403 -1016 1 1051 361 316 100 25 chr3 61134429 61134708 -98465075 - L2 LINE L2 -393 3026 2727 1 1051 492 252 9 0 chr3 61134865 61134976 -98464807 - PB1 SINE Alu 0 127 16 1 1051 223 196 22 0 chr3 61135194 61135240 -98464543 + A-rich Low_complexity Low_complexity 2 48 0 1 1051 234 0 0 0 chr3 61135369 61135395 -98464388 + (TTTG)n Simple_repeat Simple_repeat 1 26 0 1 1051 243 0 0 0 chr3 61135567 61135594 -98464189 + (CA)n Simple_repeat Simple_repeat 2 28 0 1 1051 2121 178 58 2 chr3 61135669 61136063 -98463720 + MTC LTR MaLR 1 416 -5 1 1051 1368 71 0 0 chr3 61136107 61136332 -98463451 + (GGAGA)n Simple_repeat Simple_repeat 1 225 0 1 1051 180 0 0 0 chr3 61137367 61137387 -98462396 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1 1051 15404 7 0 0 chr3 61137483 61139319 -98460464 + L1_Mm LINE L1 3029 4864 -1019 1 1051 231 288 15 29 chr3 61139482 61139550 -98460233 + ID4 SINE ID 17 83 0 1 1051 1646 187 84 180 chr3 61140169 61140730 -98459053 + RLTR18B LTR ERVK 2 508 -4 1 1051 423 0 0 0 chr3 61140730 61140777 -98459006 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 1051 267 396 20 0 chr3 61140876 61140977 -98458806 + PB1D7 SINE Alu 13 115 -5 1 1051 408 88 0 0 chr3 61140983 61141040 -98458743 + (CAAG)n Simple_repeat Simple_repeat 2 58 0 1 1051 180 77 0 0 chr3 61141295 61141321 -98458462 + (CACCT)n Simple_repeat Simple_repeat 3 28 0 1 1051 873 0 0 0 chr3 61141694 61141791 -98457992 + (GAA)n Simple_repeat Simple_repeat 3 99 0 1 1051 591 286 159 31 chr3 61142003 61142335 -98457448 - MLT1F LTR MaLR 0 555 167 2 1051 428 331 127 35 chr3 61142491 61142751 -98457032 - MLT1F-int LTR MaLR -97 1392 1109 2 1051 243 324 246 6 chr3 61143214 61143385 -98456398 + MIRb SINE MIR 38 249 -19 2 1051 216 220 68 0 chr3 61143443 61143502 -98456281 + MIR3 SINE MIR 123 185 -23 2 1051 312 372 68 37 chr3 61143559 61143749 -98456034 - MIRc SINE MIR -15 253 58 2 1051 432 0 0 0 chr3 61143808 61143856 -98455927 + (CA)n Simple_repeat Simple_repeat 1 48 0 2 1051 475 177 137 34 chr3 61145000 61145146 -98454637 - Lx6 LINE L1 -1518 5942 5782 2 1051 1039 261 0 0 chr3 61146610 61146821 -98452962 - B3 SINE B2 -3 213 3 2 1051 865 212 121 0 chr3 61146827 61147025 -98452758 - ID_B1 SINE B4 -1 223 2 2 1051 764 175 6 0 chr3 61147340 61147500 -98452283 + GA-rich Low_complexity Low_complexity 2 162 0 2 1051 190 252 79 94 chr3 61148576 61148703 -98451080 - MIR3 SINE MIR -22 186 62 2 1051 768 287 36 51 chr3 61150881 61151156 -98448627 - MTE2a LTR MaLR -24 355 85 2 1051 261 245 0 0 chr3 61151159 61151208 -98448575 + B1_Mur4 SINE Alu 3 51 -99 2 1051 308 233 46 11 chr3 61151507 61151594 -98448189 + B1F1 SINE Alu 10 99 -50 2 1051 323 315 86 27 chr3 61151634 61151820 -98447963 - MER58B DNA MER1_type -144 197 1 2 1051 273 250 14 14 chr3 61151917 61151986 -98447797 + tRNA-Ala-GCA tRNA tRNA 2 70 -5 2 1051 22 0 0 0 chr3 61151986 61152008 -98447775 + AT_rich Low_complexity Low_complexity 1 22 0 2 1051 210 143 0 0 chr3 61152070 61152105 -98447678 + (GGGA)n Simple_repeat Simple_repeat 3 37 0 2 1051 1133 193 14 5 chr3 61153905 61154118 -98445665 - B3 SINE B2 -1 215 1 2 1051 554 294 144 5 chr3 61154181 61154396 -98445387 + B4A SINE B4 4 248 -44 2 1051 986 80 100 0 chr3 61154402 61154552 -98445231 - RLTR28 LTR ERVL -359 165 1 2 1051 2548 179 103 12 chr3 61154564 61155049 -98444734 - RMER15 LTR ERVL -44 531 3 2 1051 217 236 0 41 chr3 61155077 61155174 -98444609 + (CATA)n Simple_repeat Simple_repeat 4 96 0 2 1051 344 291 46 40 chr3 61156117 61156263 -98443520 - MLT1F LTR MaLR -25 544 391 2 1051 448 338 78 15 chr3 61156319 61156565 -98443218 - MLT1F LTR MaLR -301 268 1 2 1051 247 254 17 0 chr3 61157630 61157689 -98442094 + (TTA)n Simple_repeat Simple_repeat 2 61 0 2 1051 2046 216 64 69 chr3 61158192 61158788 -98440995 - RCHARR1 DNA MER1_type -32 942 350 2 1051 256 102 20 20 chr3 61158791 61158841 -98440942 + (TA)n Simple_repeat Simple_repeat 1 50 0 2 1051 31 26 0 0 chr3 61158854 61158892 -98440891 + AT_rich Low_complexity Low_complexity 1 38 0 2 1051 434 329 76 0 chr3 61159158 61159316 -98440467 - RCHARR1 DNA MER1_type -632 342 173 2 1051 897 372 45 12 chr3 61159324 61159835 -98439948 + Tigger10 DNA Tigger 1255 1782 -61 2 1051 1334 91 5 21 chr3 61160444 61160635 -98439148 - B2_Mm1t SINE B2 -3 190 3 2 1051 180 0 0 0 chr3 61160674 61160694 -98439089 + (A)n Simple_repeat Simple_repeat 1 20 0 2 1051 26 0 0 0 chr3 61161254 61161280 -98438503 + AT_rich Low_complexity Low_complexity 1 26 0 2 1051 1134 126 16 30 chr3 61161568 61161764 -98438019 + B2_Mm1t SINE B2 3 202 -14 2 1051 474 331 0 8 chr3 61162156 61162281 -98437502 + MER58A DNA MER1_type 2 125 -99 2 1051 279 113 0 0 chr3 61162317 61162370 -98437413 + (A)n Simple_repeat Simple_repeat 1 53 0 2 1051 293 28 0 0 chr3 61163396 61163432 -98436351 + U2 snRNA snRNA 1 36 -152 2 1051 1287 91 11 0 chr3 61163445 61163621 -98436162 + B2_Mm1t SINE B2 2 179 -14 2 1051 280 156 31 15 chr3 61163697 61163762 -98436021 + B2_Mm2 SINE B2 130 195 0 2 1051 21 0 0 0 chr3 61164067 61164088 -98435695 + AT_rich Low_complexity Low_complexity 1 21 0 2 1051 279 0 0 0 chr3 61164116 61164147 -98435636 + (TAA)n Simple_repeat Simple_repeat 2 32 0 2 1051 469 77 39 0 chr3 61165676 61165754 -98434029 + B2_Mm1t SINE B2 112 192 -1 2 1051 203 364 27 18 chr3 61166040 61166152 -98433631 - MIRc SINE MIR -99 169 57 2 1051 596 239 173 8 chr3 61166498 61166689 -98433094 + MIRb SINE MIR 20 236 -32 2 1051 192 97 0 0 chr3 61168343 61168374 -98431409 + (CCCCG)n Simple_repeat Simple_repeat 4 34 0 2 1051 204 209 0 0 chr3 61170368 61170411 -98429372 + (TG)n Simple_repeat Simple_repeat 2 44 0 2 1051 234 0 0 0 chr3 61170414 61170440 -98429343 + (T)n Simple_repeat Simple_repeat 1 26 0 2 1051 414 0 0 0 chr3 61172695 61172741 -98427042 + (TC)n Simple_repeat Simple_repeat 1 46 0 2 1051 306 176 20 0 chr3 61173509 61173560 -98426223 - MER5A DNA MER1_type -134 55 4 2 1051 22 35 0 0 chr3 61174358 61174387 -98425396 + AT_rich Low_complexity Low_complexity 1 29 0 2 1051 229 74 0 85 chr3 61174790 61174849 -98424934 + T-rich Low_complexity Low_complexity 1 54 0 2 1051 243 0 0 0 chr3 61175132 61175159 -98424624 + (GA)n Simple_repeat Simple_repeat 1 27 0 2 1051 262 330 21 11 chr3 61175804 61175899 -98423884 - MER20 DNA MER1_type -77 142 47 2 1051 549 0 0 0 chr3 61175943 61176004 -98423779 + (CA)n Simple_repeat Simple_repeat 2 62 0 2 1051 22 0 0 0 chr3 61176243 61176265 -98423518 + GC_rich Low_complexity Low_complexity 1 22 0 2 1051 187 148 0 53 chr3 61176567 61176624 -98423159 + T-rich Low_complexity Low_complexity 3 56 0 2 1051 219 173 0 0 chr3 61176616 61176668 -98423115 + CT-rich Low_complexity Low_complexity 2 53 0 2 1051 499 221 35 17 chr3 61177731 61177846 -98421937 - B1_Mur2 SINE Alu -2 147 31 2 1051 297 0 0 0 chr3 61178382 61178415 -98421368 + (TG)n Simple_repeat Simple_repeat 2 34 0 2 1051 247 216 0 19 chr3 61178774 61178826 -98420957 + CT-rich Low_complexity Low_complexity 3 53 0 2 1051 219 358 0 10 chr3 61178827 61178923 -98420860 - PB1D10 SINE Alu 0 117 23 2 1051 260 293 68 68 chr3 61180084 61180245 -98419538 + RSINE1 SINE B4 3 163 -2 2 1051 252 250 33 0 chr3 61180662 61180722 -98419061 - RSINE1 SINE B4 -36 129 68 2 1051 207 0 0 0 chr3 61181974 61181997 -98417786 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2 1051 247 235 150 14 chr3 61182786 61182873 -98416910 - B4 SINE B4 -200 92 3 2 1051 309 317 90 21 chr3 61182886 61183031 -98416752 - HAL1-3A_ME LINE L1 -420 2438 2284 2 1051 216 161 48 0 chr3 61183040 61183102 -98416681 + CT-rich Low_complexity Low_complexity 3 67 0 2 1051 729 63 0 0 chr3 61183134 61183229 -98416554 + (TTTCC)n Simple_repeat Simple_repeat 4 98 0 2 1051 219 227 0 0 chr3 61184398 61184442 -98415341 + (CA)n Simple_repeat Simple_repeat 2 45 0 2 1051 186 43 0 0 chr3 61185567 61185590 -98414193 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2 1051 22 0 0 0 chr3 61186153 61186175 -98413608 + AT_rich Low_complexity Low_complexity 1 22 0 2 1051 297 0 0 0 chr3 61186317 61186350 -98413433 + (TTA)n Simple_repeat Simple_repeat 1 33 0 2 1051 2665 29 12 12 chr3 61186350 61186694 -98413089 - L1Md_F3 LINE L1 -26 6558 6215 2 1051 350 339 38 30 chr3 61187395 61187526 -98412257 + ID_B1 SINE B4 86 217 -7 2 1051 234 0 0 0 chr3 61187581 61187607 -98412176 + (CA)n Simple_repeat Simple_repeat 1 26 0 2 1051 209 228 0 34 chr3 61187617 61187676 -98412107 + (TG)n Simple_repeat Simple_repeat 2 58 0 2 1051 449 319 86 78 chr3 61187706 61187975 -98411808 - B4 SINE B4 -11 281 11 2 1051 383 252 90 37 chr3 61188060 61188171 -98411612 - PB1D10 SINE Alu -9 118 1 2 1051 30 45 0 0 chr3 61189068 61189112 -98410671 + AT_rich Low_complexity Low_complexity 1 44 0 2 1051 290 296 18 36 chr3 61189789 61189901 -98409882 - PB1D10 SINE Alu -7 110 1 2 1051 677 345 87 18 chr3 61190140 61190473 -98409310 + MLT1B LTR MaLR 28 383 -7 2 1051 234 81 0 0 chr3 61190586 61190623 -98409160 + (CAAAAA)n Simple_repeat Simple_repeat 4 40 0 2 1051 184 133 115 51 chr3 61190790 61190848 -98408935 - MIR SINE MIR -47 221 161 2 1051 261 0 0 0 chr3 61190860 61190889 -98408894 + (TATATG)n Simple_repeat Simple_repeat 2 30 0 2 1051 245 254 63 0 chr3 61191053 61191116 -98408667 + ID4 SINE ID 1 67 -16 2 1051 216 310 26 33 chr3 61191607 61191735 -98408048 - MIRm SINE MIR -118 150 27 2 1051 24 77 0 0 chr3 61192323 61192375 -98407408 + AT_rich Low_complexity Low_complexity 1 52 0 2 1051 351 78 0 0 chr3 61192386 61192437 -98407346 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 2 1051 321 237 15 106 chr3 61192440 61192572 -98407211 + PB1D9 SINE Alu 1 120 0 2 1051 500 256 21 28 chr3 61192608 61192749 -98407034 + B1F SINE Alu 6 145 -4 2 1051 246 329 0 0 chr3 61192774 61192844 -98406939 + ID4 SINE ID 3 72 -11 2 1051 282 304 165 18 chr3 61193086 61193250 -98406533 - Charlie1a DNA MER1_type -302 1153 966 2 1051 627 250 20 54 chr3 61194069 61194272 -98405511 - Charlie1a DNA MER1_type -704 751 556 2 1051 356 318 0 18 chr3 61194442 61194551 -98405232 + PB1D10 SINE Alu 11 117 0 2 1051 333 186 0 0 chr3 61194552 61194622 -98405161 + GA-rich Low_complexity Low_complexity 2 71 0 2 1051 225 208 20 40 chr3 61194664 61194714 -98405069 + ID4_ SINE ID 34 82 -1 2 1051 452 76 12 25 chr3 61195210 61195291 -98404492 + RMER17C LTR ERVK 331 410 0 2 1051 207 258 16 16 chr3 61195493 61195556 -98404227 + (CATATA)n Simple_repeat Simple_repeat 3 65 0 2 1051 454 290 28 83 chr3 61196925 61197143 -98402640 - RMER15 LTR ERVL -2 573 368 2 1051 203 156 12 38 chr3 61198112 61198187 -98401596 + (TA)n Simple_repeat Simple_repeat 1 73 0 2 1051 486 49 0 0 chr3 61198187 61198248 -98401535 + (TG)n Simple_repeat Simple_repeat 2 62 0 2 1051 2806 184 48 79 chr3 61199607 61200238 -98399545 - RMER19C LTR ERVK 0 611 1 2 1051 567 253 94 56 chr3 61201964 61202144 -98397639 - B3A SINE B2 0 198 12 2 1051 2655 71 43 55 chr3 61202895 61203311 -98396472 - RLTR10A LTR ERVK 0 411 1 3 1051 242 338 14 19 chr3 61203526 61203737 -98396046 + L1MC4 LINE L1 7438 7647 -395 3 1051 255 344 62 8 chr3 61205134 61205263 -98394520 + MIR SINE MIR 119 254 -8 3 1051 332 189 14 0 chr3 61205325 61205399 -98394384 + G-rich Low_complexity Low_complexity 1 75 0 3 1051 1128 124 0 0 chr3 61205399 61205577 -98394206 + (GA)n Simple_repeat Simple_repeat 1 178 0 3 1051 252 257 194 28 chr3 61205609 61205717 -98394066 - MER2B DNA MER2_type -32 304 179 3 1051 304 321 76 12 chr3 61206129 61206378 -98393405 + HAL1 LINE L1 1428 1692 -815 3 1051 3425 152 99 94 chr3 61206661 61207447 -98392336 + RLTR25A LTR ERVK 7 860 -243 3 1051 414 0 0 0 chr3 61207447 61207493 -98392290 + (TG)n Simple_repeat Simple_repeat 1 46 0 3 1051 775 168 115 50 chr3 61207493 61207533 -98392250 + RLTR25A LTR ERVK 861 906 -197 3 1051 232 196 43 0 chr3 61207663 61207709 -98392074 + U7 snRNA snRNA 14 61 -2 3 1051 893 258 72 20 chr3 61207830 61208079 -98391704 + RLTR25B LTR ERVK 766 1027 -1 3 1051 1539 190 84 9 chr3 61208153 61208488 -98391295 - MTB_Mm LTR MaLR 0 407 48 3 1051 211 311 67 0 chr3 61208498 61208588 -98391195 - MIRb SINE MIR -94 174 79 3 1051 1334 84 6 0 chr3 61208810 61208988 -98390795 - B2_Mm1a SINE B2 -14 179 1 3 1051 576 311 14 64 chr3 61209685 61209905 -98389878 + B3 SINE B2 7 215 -1 3 1051 240 198 25 62 chr3 61209959 61210041 -98389742 - MTD LTR MaLR -3 416 298 3 1051 991 263 157 7 chr3 61210167 61210454 -98389329 - MTD LTR MaLR -85 334 5 3 1052 357 24 0 0 chr3 61210959 61211001 -98388782 + (TG)n Simple_repeat Simple_repeat 1 42 0 3 1052 1938 216 26 21 chr3 61211001 61211422 -98388361 - Lx6 LINE L1 -26 7434 7012 3 1052 477 247 139 0 chr3 61211423 61211581 -98388202 + Lx6 LINE L1 6835 7014 -446 3 1052 586 241 72 0 chr3 61211816 61211953 -98387830 + B1_Mus1 SINE Alu 1 148 0 3 1052 624 50 0 0 chr3 61212352 61212432 -98387351 + (TTCC)n Simple_repeat Simple_repeat 4 83 0 3 1052 272 70 23 0 chr3 61212776 61212819 -98386964 + (CA)n Simple_repeat Simple_repeat 1 44 0 3 1052 699 12 0 0 chr3 61213443 61213523 -98386260 + (TTCC)n Simple_repeat Simple_repeat 4 83 0 3 1052 1699 150 60 6 chr3 61214984 61215299 -98384484 + Lx LINE L1 6321 6652 -2 3 1052 27 87 0 0 chr3 61215342 61215411 -98384372 + AT_rich Low_complexity Low_complexity 1 69 0 3 1052 262 309 37 0 chr3 61215473 61215554 -98384229 - PB1D10 SINE Alu -5 112 29 3 1052 889 126 12 12 chr3 61215839 61216000 -98383783 + GA-rich Low_complexity Low_complexity 3 163 0 3 1052 1223 105 0 0 chr3 61216028 61216200 -98383583 + B2_Mm2 SINE B2 2 173 -22 3 1052 270 0 0 0 chr3 61216243 61216273 -98383510 + (CAAAA)n Simple_repeat Simple_repeat 1 30 0 3 1052 1038 176 21 0 chr3 61217319 61217507 -98382276 - URR1A DNA MER1_type 0 226 35 3 1052 264 389 35 53 chr3 61217722 61217893 -98381890 - MER5A DNA MER1_type -21 168 1 3 1052 852 291 73 64 chr3 61217954 61218312 -98381471 - MTEb LTR MaLR -24 355 3 3 1052 1927 284 127 10 chr3 61218316 61218916 -98380867 - MTEb-int LTR MaLR -2 1578 909 3 1052 310 222 28 49 chr3 61218917 61219041 -98380742 + L1MA6 LINE L1 6111 6230 -70 3 1052 362 249 14 8 chr3 61220738 61220830 -98378953 - ID4_ SINE ID -54 98 9 3 1052 243 0 0 0 chr3 61221038 61221065 -98378718 + (TG)n Simple_repeat Simple_repeat 2 28 0 3 1052 577 190 31 52 chr3 61221068 61221200 -98378583 - B3 SINE B2 -33 183 59 3 1052 534 239 85 0 chr3 61221689 61221819 -98377964 - B1_Mur2 SINE Alu -8 141 1 3 1052 184 163 111 44 chr3 61222296 61222341 -98377442 + MER5B DNA MER1_type 5 52 -126 3 1052 856 261 115 37 chr3 61222896 61223270 -98376513 - MTD LTR MaLR -14 405 18 3 1052 295 187 0 39 chr3 61223272 61223350 -98376433 + Lx9 LINE L1 7397 7471 -173 3 1052 1009 272 72 20 chr3 61223356 61223705 -98376078 - Lx8 LINE L1 -257 7216 6850 3 1052 387 0 0 0 chr3 61223705 61223748 -98376035 + (A)n Simple_repeat Simple_repeat 1 43 0 3 1052 533 133 10 0 chr3 61224372 61224470 -98375313 - Lx2 LINE L1 -4 6650 6552 3 1052 4730 140 37 1 chr3 61224470 61225431 -98374352 - Lx2 LINE L1 -564 6433 5420 3 1052 1301 61 6 0 chr3 61225430 61225611 -98374172 - MusHAL1 LINE L1 -1941 771 590 3 1052 1612 48 5 0 chr3 61225810 61226016 -98373767 - L1Md_F2 LINE L1 -12 6570 6364 3 1052 276 30 0 0 chr3 61226121 61226154 -98373629 + (CA)n Simple_repeat Simple_repeat 1 33 0 3 1052 716 142 15 0 chr3 61226160 61226294 -98373489 + (TATG)n Simple_repeat Simple_repeat 2 137 0 3 1052 182 37 0 36 chr3 61226703 61226731 -98373052 + (CCCCCA)n Simple_repeat Simple_repeat 2 28 0 3 1052 243 364 0 20 chr3 61227681 61227782 -98372001 + L2c LINE L2 3288 3386 -1 3 1052 204 40 0 0 chr3 61228201 61228226 -98371557 + (TC)n Simple_repeat Simple_repeat 2 26 0 3 1052 288 0 0 0 chr3 61228245 61228277 -98371506 + (TG)n Simple_repeat Simple_repeat 2 33 0 3 1052 2149 153 49 8 chr3 61228290 61228660 -98371123 - RLTR17 LTR ERVK -307 385 1 3 1052 540 348 34 64 chr3 61228775 61229073 -98370710 + B4A SINE B4 3 291 -1 3 1052 229 335 70 23 chr3 61229434 61229605 -98370178 - MER58B DNA MER1_type -77 264 86 3 1052 298 306 0 40 chr3 61230082 61230208 -98369575 - L1MA4A LINE L1 -368 5935 5815 3 1052 315 0 0 0 chr3 61230228 61230263 -98369520 + (TG)n Simple_repeat Simple_repeat 1 35 0 3 1052 573 187 79 31 chr3 61231232 61231359 -98368424 - B1_Mur1 SINE Alu -15 134 2 3 1052 434 312 49 75 chr3 61231642 61231947 -98367836 + Lx8 LINE L1 7175 7471 -2 3 1052 1011 288 33 89 chr3 61232240 61232535 -98367248 + L1_Rod LINE L1 5176 5472 -408 3 1052 286 245 192 10 chr3 61232535 61232634 -98367149 + PB1D9 SINE Alu 2 118 -2 3 1052 1347 237 10 35 chr3 61232634 61233066 -98366717 + L1_Rod LINE L1 5473 5862 -18 3 1052 1694 188 7 3 chr3 61233069 61233357 -98366426 - ORR1B1 LTR MaLR 0 394 106 3 1052 1241 294 35 47 chr3 61233361 61233953 -98365830 + Lx9 LINE L1 6857 7441 -203 3 1052 384 71 0 0 chr3 61233973 61234029 -98365754 + (TC)n Simple_repeat Simple_repeat 2 57 0 3 1052 192 77 0 0 chr3 61234031 61234057 -98365726 + (TG)n Simple_repeat Simple_repeat 2 27 0 3 1052 2748 195 27 15 chr3 61235329 61235918 -98363865 - Lx5 LINE L1 -739 6311 5716 3 1052 2829 189 16 26 chr3 61235921 61236493 -98363290 + Lx5 LINE L1 6337 6902 -148 3 1052 5939 74 1 0 chr3 61236597 61237368 -98362415 - L1_Mus2 LINE L1 0 6566 5795 3 1052 499 351 28 19 chr3 61237694 61237909 -98361874 - MIR SINE MIR -38 224 8 3 1052 218 311 120 46 chr3 61238784 61238820 -98360963 - ID_B1 SINE B4 -107 117 2 3 1052 222 310 111 14 chr3 61238820 61238892 -98360891 - ID4 SINE ID -3 80 2 3 1052 588 292 52 78 chr3 61239449 61239794 -98359989 - MLT1B LTR MaLR -13 377 42 3 1052 208 347 62 31 chr3 61240076 61240204 -98359579 + MIR SINE MIR 31 162 -100 3 1052 398 158 137 0 chr3 61240273 61240368 -98359415 + L1M4 LINE L1 5173 5280 -866 3 1052 386 345 57 25 chr3 61240400 61240682 -98359101 + B4A SINE B4 2 292 0 3 1052 201 226 0 0 chr3 61240827 61240880 -98358903 + (TG)n Simple_repeat Simple_repeat 2 54 0 3 1052 342 287 76 59 chr3 61240887 61241124 -98358659 + L1M3 LINE L1 5381 5621 -550 3 1052 310 328 82 15 chr3 61241235 61241430 -98358353 + L1MB7 LINE L1 5922 6129 -55 3 1052 2079 178 63 12 chr3 61242215 61242614 -98357169 + MTC LTR MaLR 1 419 -2 3 1052 2177 152 27 2 chr3 61243130 61243577 -98356206 - Lx5 LINE L1 -1042 6008 5546 3 1052 356 290 54 24 chr3 61243798 61243964 -98355819 + MLT1B LTR MaLR 79 249 -141 3 1052 228 363 24 8 chr3 61243989 61244114 -98355669 + MLT1B LTR MaLR 304 430 -37 3 1052 833 387 44 28 chr3 61244513 61244949 -98354834 - LTR16B LTR ERVL 0 463 21 3 1052 252 0 0 0 chr3 61245072 61245100 -98354683 + (T)n Simple_repeat Simple_repeat 1 28 0 3 1052 180 111 0 0 chr3 61245333 61245360 -98354423 + (T)n Simple_repeat Simple_repeat 1 27 0 3 1052 2786 77 50 0 chr3 61246731 61247108 -98352675 - MTA_Mm LTR MaLR 0 396 1 3 1052 928 188 84 26 chr3 61248056 61248274 -98351509 + ORR1B2 LTR MaLR 1 234 -95 3 1052 1421 111 5 0 chr3 61248271 61248488 -98351295 + ORR1B2-int LTR MaLR 404 621 -888 3 1052 34037 45 0 3 chr3 61248497 61253965 -98345818 + L1Md_Gf LINE L1 44 5589 -297 3 1052 8433 34 0 0 chr3 61253965 61254960 -98344823 + L1Md_T LINE L1 5587 6581 -1 3 1052 214 240 30 10 chr3 61254969 61255070 -98344713 + A-rich Low_complexity Low_complexity 2 104 0 3 1052 1276 139 125 21 chr3 61255177 61255457 -98344326 + RMER16-int LTR ERVK 314 622 -4784 3 1052 3368 196 49 71 chr3 61255457 61255635 -98344148 + ORR1B2-int LTR MaLR 613 797 -712 3 1052 698 186 13 52 chr3 61255635 61255788 -98343995 + B1_Mur3 SINE Alu 1 147 -2 3 1052 3368 196 49 71 chr3 61255788 61256466 -98343317 + ORR1B2-int LTR MaLR 798 1450 -59 3 1052 1759 181 60 82 chr3 61256477 61256546 -98343237 + ORR1B2 LTR MaLR 1 64 -303 3 1052 1179 54 119 12 chr3 61256546 61256714 -98343069 + B2_Mm2 SINE B2 2 187 -8 3 1052 1759 181 60 82 chr3 61256714 61257011 -98342772 + ORR1B2 LTR MaLR 65 359 -8 3 1052 480 18 0 0 chr3 61258340 61258397 -98341386 + (CA)n Simple_repeat Simple_repeat 1 57 0 3 1052 579 301 19 68 chr3 61258587 61258794 -98340989 + B3A SINE B2 2 198 0 3 1052 506 16 16 0 chr3 61259014 61259077 -98340706 + (GA)n Simple_repeat Simple_repeat 1 64 0 3 1052 1136 300 17 10 chr3 61259087 61259498 -98340285 + Lx8 LINE L1 5261 5674 -206 3 1052 1329 84 11 0 chr3 61259526 61259704 -98340079 - B2_Mm1t SINE B2 -11 182 3 3 1052 641 289 104 87 chr3 61259707 61260156 -98339627 + Lx8 LINE L1 5665 6167 -1306 3 1052 507 33 0 0 chr3 61260156 61260217 -98339566 + (TA)n Simple_repeat Simple_repeat 1 61 0 3 1052 375 23 0 0 chr3 61260217 61260260 -98339523 + (GA)n Simple_repeat Simple_repeat 2 45 0 3 1052 641 289 104 87 chr3 61260260 61260344 -98339439 + Lx8 LINE L1 6168 6233 -1240 3 1052 405 39 0 0 chr3 61260344 61260395 -98339388 + (GGGA)n Simple_repeat Simple_repeat 4 54 0 3 1052 641 289 104 87 chr3 61260395 61260754 -98339029 + Lx8 LINE L1 6234 6573 -900 3 1052 1129 74 18 12 chr3 61260768 61260933 -98338850 + L1Md_F2 LINE L1 6416 6581 -1 3 1052 330 132 0 0 chr3 61260937 61260990 -98338793 + (A)n Simple_repeat Simple_repeat 1 53 0 3 1052 285 89 0 0 chr3 61261479 61261524 -98338259 + (CAAA)n Simple_repeat Simple_repeat 2 46 0 3 1052 362 293 225 17 chr3 61261534 61261836 -98337947 - Lx8 LINE L1 -252 7221 6857 4 1052 736 181 12 6 chr3 61261844 61262005 -98337778 + GA-rich Low_complexity Low_complexity 2 163 0 4 1052 450 323 14 36 chr3 61262014 61262105 -98337678 - Lx8 LINE L1 -655 6818 6756 4 1052 450 94 0 0 chr3 61262105 61262169 -98337614 + (TTA)n Simple_repeat Simple_repeat 3 66 0 4 1052 450 310 14 37 chr3 61262169 61262319 -98337464 - Lx8 LINE L1 -718 6755 6606 4 1052 3712 62 12 2 chr3 61262319 61262824 -98336959 - L1Md_F2 LINE L1 -191 6391 5882 4 1052 2669 93 63 5 chr3 61263149 61263547 -98336236 + BGLII LTR ERVK 1 421 0 4 1052 420 298 84 7 chr3 61264231 61264373 -98335410 + MIRb SINE MIR 68 220 -48 4 1052 486 279 67 52 chr3 61264586 61264779 -98335004 - B3A SINE B2 0 198 3 4 1052 655 280 78 0 chr3 61265055 61265248 -98334535 - B3 SINE B2 -7 209 2 4 1052 1560 193 94 3 chr3 61265251 61265579 -98334204 - RMER15 LTR ERVL 0 575 218 4 1052 1056 191 19 91 chr3 61266812 61267077 -98332706 - RMER15 LTR ERVL -329 246 1 4 1052 247 375 74 41 chr3 61267626 61267868 -98331915 + MLT2B4 LTR ERVL 114 363 -193 4 1052 267 157 0 0 chr3 61267924 61267975 -98331808 + (CA)n Simple_repeat Simple_repeat 2 52 0 4 1052 285 100 0 0 chr3 61268312 61268362 -98331421 + (A)n Simple_repeat Simple_repeat 1 50 0 4 1052 292 200 229 10 chr3 61269774 61269870 -98329913 + PB1D10 SINE Alu 1 117 0 4 1052 2944 54 8 3 chr3 61270193 61270580 -98329203 - MTA_Mm LTR MaLR -7 389 1 4 1052 206 272 146 53 chr3 61271635 61271806 -98327977 + L2 LINE L2 2688 2874 -545 4 1052 453 320 44 16 chr3 61272923 61273171 -98326612 + L1_Mur3 LINE L1 63 317 -7411 4 1052 1181 217 17 60 chr3 61273167 61273583 -98326200 + L1_Mur3 LINE L1 859 1256 -6472 4 1052 1234 166 25 16 chr3 61273587 61273889 -98325894 + L1_Mur3 LINE L1 1155 1458 -4422 4 1052 356 221 12 12 chr3 61273889 61273986 -98325797 - Lx6 LINE L1 -795 6901 6795 4 1052 7342 208 75 12 chr3 61274008 61275916 -98323867 + Lx6 LINE L1 5405 7443 -17 4 1052 448 271 19 0 chr3 61276756 61276863 -98322920 + B3 SINE B2 11 119 -97 4 1052 261 98 0 0 chr3 61276866 61276907 -98322876 + (CATA)n Simple_repeat Simple_repeat 2 42 0 4 1052 636 228 27 7 chr3 61276963 61277109 -98322674 - B1_Mur1 SINE Alu 0 149 1 4 1052 25 31 0 0 chr3 61279704 61279736 -98320047 + AT_rich Low_complexity Low_complexity 1 32 0 4 1052 517 236 163 0 chr3 61280000 61280123 -98319660 - ID_B1 SINE B4 -2 222 80 4 1052 447 52 0 0 chr3 61280472 61280530 -98319253 + (TCCC)n Simple_repeat Simple_repeat 4 61 0 4 1052 581 248 16 0 chr3 61280576 61280701 -98319082 + RSINE1 SINE B4 3 129 -36 4 1052 1058 158 3 88 chr3 61280875 61281159 -98318624 + RMER17C LTR ERVK 3 262 -148 4 1052 8513 194 48 22 chr3 61281334 61283202 -98316581 + Lx5 LINE L1 3779 5716 -164 4 1052 3002 77 12 2 chr3 61283202 61283619 -98316164 + BGLII LTR ERVK 1 421 0 4 1052 8513 267 81 39 chr3 61283619 61285046 -98314737 + Lx5 LINE L1 5717 7434 -26 4 1052 35 54 0 0 chr3 61285046 61285102 -98314681 + AT_rich Low_complexity Low_complexity 1 56 0 4 1052 183 387 74 21 chr3 61287029 61287219 -98312564 - L2 LINE L2 -473 2946 2747 4 1052 207 264 0 19 chr3 61288624 61288678 -98311105 + GA-rich Low_complexity Low_complexity 5 57 0 4 1052 232 295 0 0 chr3 61288909 61288970 -98310813 - B1F1 SINE Alu -84 65 5 4 1052 590 325 6 0 chr3 61289118 61289275 -98310508 + RSINE1 SINE B4 6 163 -2 4 1052 288 0 0 0 chr3 61289457 61289489 -98310294 + (CAA)n Simple_repeat Simple_repeat 2 33 0 4 1052 21 0 0 0 chr3 61289523 61289544 -98310239 + AT_rich Low_complexity Low_complexity 1 21 0 4 1052 2984 119 41 25 chr3 61290128 61290611 -98309172 + Lx LINE L1 6159 6649 -5 4 1052 256 291 128 85 chr3 61291862 61292050 -98307733 + ORR1D1 LTR MaLR 166 361 -13 4 1052 240 212 106 0 chr3 61292137 61292203 -98307580 - MER63D DNA AcHobo -611 450 378 4 1052 525 32 0 0 chr3 61292204 61292267 -98307516 + (TA)n Simple_repeat Simple_repeat 2 64 0 4 1052 656 297 70 26 chr3 61292403 61292673 -98307110 - RMER15 LTR ERVL 0 575 294 4 1052 1564 27 32 0 chr3 61292991 61293178 -98306605 - B2_Mm1t SINE B2 0 193 1 4 1052 496 261 104 57 chr3 61293178 61293389 -98306394 - RMER15-int LTR ERVL -151 4848 4628 4 1052 2380 49 0 0 chr3 61293825 61294112 -98305671 + L1_Mus1 LINE L1 6281 6567 0 4 1052 891 128 0 0 chr3 61294117 61294258 -98305525 + (GAA)n Simple_repeat Simple_repeat 1 141 0 4 1052 1115 358 70 23 chr3 61294653 61295477 -98304306 - RMER15-int LTR ERVL -2908 2091 1229 4 1052 1140 341 66 27 chr3 61295471 61296183 -98303600 - RMER15-int LTR ERVL -4258 741 2 4 1052 579 342 55 4 chr3 61296184 61296419 -98303364 - RMER15 LTR ERVL 0 575 329 4 1052 2380 230 49 24 chr3 61296424 61297092 -98302691 + Lx9 LINE L1 6510 7194 -450 4 1052 441 241 7 0 chr3 61297119 61297256 -98302527 + Lx9 LINE L1 7500 7637 -7 4 1052 7046 64 11 8 chr3 61297788 61298712 -98301071 + L1Md_F2 LINE L1 5655 6581 -1 4 1052 37188 31 3 6 chr3 61299268 61305449 -98294334 - L1Md_A LINE L1 -1 6581 422 4 1052 336 286 99 16 chr3 61305622 61305743 -98294040 - Lx8 LINE L1 -219 7254 7124 4 1052 1972 321 97 31 chr3 61305779 61305887 -98293896 - Lx8 LINE L1 -489 6984 6847 4 1052 459 0 0 0 chr3 61305887 61305938 -98293845 + (CA)n Simple_repeat Simple_repeat 1 51 0 4 1052 1972 321 97 31 chr3 61305938 61307097 -98292686 - Lx8 LINE L1 -627 6846 5635 4 1052 2772 146 8 59 chr3 61307131 61307642 -98292141 - RLTR28 LTR ERVL -38 486 2 4 1052 541 250 17 35 chr3 61307642 61307816 -98291967 - L1_Mur2 LINE L1 -258 5619 5449 4 1052 865 126 6 6 chr3 61307826 61308002 -98291781 + (TTCC)n Simple_repeat Simple_repeat 2 177 0 4 1052 498 268 129 38 chr3 61308019 61308283 -98291500 - L1_Mur2 LINE L1 -430 5450 5163 4 1052 394 206 266 18 chr3 61308283 61308392 -98291391 - RMER15 LTR ERVL 0 575 440 4 1052 635 230 0 0 chr3 61308377 61308490 -98291293 - B3 SINE B2 -103 113 1 4 1052 213 108 0 0 chr3 61308643 61308680 -98291103 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 4 1052 225 0 0 0 chr3 61308753 61308778 -98291005 + (CAAA)n Simple_repeat Simple_repeat 4 28 0 4 1052 214 336 72 24 chr3 61309229 61309354 -98290429 + MIRm SINE MIR 45 175 -101 4 1052 542 271 98 24 chr3 61309614 61309829 -98289954 + MER33 DNA MER1_type 41 272 -52 4 1052 2096 78 0 61 chr3 61309829 61310141 -98289642 + L1_Mus2 LINE L1 6274 6566 0 4 1052 542 271 98 24 chr3 61310141 61310171 -98289612 + MER33 DNA MER1_type 273 304 -20 4 1052 185 154 0 25 chr3 61310340 61310380 -98289403 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 4 1052 485 341 47 57 chr3 61310898 61311091 -98288692 - B3A SINE B2 -6 192 2 4 1052 5217 55 15 0 chr3 61311179 61311847 -98287936 - L1Md_F2 LINE L1 -1 6581 5904 4 1052 2378 89 0 3 chr3 61312319 61312657 -98287126 - L1_Mm LINE L1 -129 5754 5418 4 1052 2120 159 20 41 chr3 61312692 61313165 -98286618 - Lx LINE L1 -302 6748 6290 4 1052 7139 200 92 10 chr3 61313183 61315255 -98284528 - Lx LINE L1 -739 6311 4051 4 1052 1584 192 14 66 chr3 61315255 61315696 -98284087 + L1_Mur3 LINE L1 3627 4044 -1836 4 1052 30194 102 8 18 chr3 61315800 61321616 -98278167 + L1Md_F2 LINE L1 1 5585 -298 4 1052 7259 87 1 12 chr3 61321617 61322622 -98277161 + L1Md_F2 LINE L1 5587 6580 -2 4 1052 24 0 0 0 chr3 61323242 61323266 -98276517 + AT_rich Low_complexity Low_complexity 1 24 0 4 1052 610 207 20 155 chr3 61323335 61323587 -98276196 + Lx2B LINE L1 6748 6965 -35 4 1052 396 0 0 0 chr3 61323587 61323631 -98276152 + (TAA)n Simple_repeat Simple_repeat 2 45 0 4 1052 721 154 76 8 chr3 61325403 61325534 -98274249 + B1_Mur4 SINE Alu 3 142 -8 4 1052 680 254 24 13 chr3 61325549 61325716 -98274067 + B3 SINE B2 1 162 -31 4 1052 23 0 0 0 chr3 61325716 61325739 -98274044 + AT_rich Low_complexity Low_complexity 1 23 0 4 1052 24 53 0 0 chr3 61325835 61325873 -98273910 + AT_rich Low_complexity Low_complexity 1 38 0 4 1052 203 106 0 41 chr3 61326210 61326259 -98273524 + (TTTTTG)n Simple_repeat Simple_repeat 2 48 0 4 1052 226 396 9 27 chr3 61327643 61327840 -98271943 + B4 SINE B4 13 248 -44 4 1052 322 138 185 0 chr3 61328034 61328099 -98271684 - ORR1D1 LTR MaLR -297 77 1 4 1052 40 37 0 0 chr3 61328618 61328672 -98271111 + AT_rich Low_complexity Low_complexity 1 54 0 4 1052 303 288 53 35 chr3 61329075 61329302 -98270481 - L1M5 LINE L1 -1548 4598 4368 4 1052 309 336 36 21 chr3 61329366 61329506 -98270277 - L1MD LINE L1 -1890 4256 4115 4 1052 270 338 73 7 chr3 61329537 61329674 -98270109 - LTR16A LTR ERVL 0 451 306 4 1052 1512 174 52 41 chr3 61329802 61330167 -98269616 + RMER17C LTR ERVK 40 408 -2 4 1052 444 228 21 0 chr3 61330167 61330312 -98269471 + (TA)n Simple_repeat Simple_repeat 2 149 0 4 1052 474 238 167 17 chr3 61330396 61330695 -98269088 - Lx7 LINE L1 -23 7673 7330 4 1052 641 169 137 43 chr3 61330718 61330879 -98268904 - RLTR23 LTR ERV1 -166 264 89 4 1052 31289 84 9 7 chr3 61330922 61337073 -98262710 - L1Md_F2 LINE L1 -1 6581 422 4 1052 426 106 176 0 chr3 61337095 61337180 -98262603 - RLTR23 LTR ERV1 -325 105 6 4 1052 221 0 0 33 chr3 61337245 61337275 -98262508 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 4 1052 328 219 130 32 chr3 61337277 61337400 -98262383 + L1_Rod LINE L1 5086 5220 -627 4 1052 980 302 24 88 chr3 61337436 61337769 -98262014 + RMER5 LTR ERV1 15 329 -205 4 1052 1057 116 0 0 chr3 61337769 61337916 -98261867 - B1_Mm SINE Alu 0 147 1 4 1052 980 302 24 88 chr3 61337916 61338000 -98261783 + RMER5 LTR ERV1 330 405 -129 4 1052 4952 131 104 2 chr3 61338000 61338874 -98260909 + Lx LINE L1 5522 6518 -136 4 1052 225 0 0 0 chr3 61338874 61338899 -98260884 + (TGGG)n Simple_repeat Simple_repeat 1 25 0 4 1052 4952 139 165 2 chr3 61338899 61339000 -98260783 + Lx LINE L1 6519 6644 -10 4 1052 263 269 27 55 chr3 61339000 61339110 -98260673 + RMER5 LTR ERV1 387 493 -41 4 1052 308 83 21 0 chr3 61339320 61339368 -98260415 + (TTCC)n Simple_repeat Simple_repeat 1 49 0 4 1052 293 344 21 0 chr3 61340032 61340128 -98259655 + MER21B LTR ERV1 1 98 -765 4 1052 1202 364 58 48 chr3 61340120 61340899 -98258884 + MER21B LTR ERV1 20 806 -57 4 1052 239 131 47 23 chr3 61340917 61341003 -98258780 + T-rich Low_complexity Low_complexity 3 90 0 4 1052 207 0 0 0 chr3 61341031 61341054 -98258729 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 4 1052 351 75 14 43 chr3 61341589 61341659 -98258124 + (TGGGGG)n Simple_repeat Simple_repeat 4 71 0 4 1053 342 0 0 0 chr3 61342407 61342445 -98257338 + (T)n Simple_repeat Simple_repeat 1 38 0 4 1053 295 266 40 50 chr3 61342527 61342626 -98257157 + MER33 DNA MER1_type 1 98 -226 4 1053 1084 213 106 11 chr3 61343376 61343651 -98256132 + Lx4B LINE L1 6758 7058 0 4 1053 684 169 18 12 chr3 61344101 61344269 -98255514 + (CATA)n Simple_repeat Simple_repeat 2 170 0 5 1053 206 77 0 0 chr3 61344276 61344302 -98255481 + (CA)n Simple_repeat Simple_repeat 2 27 0 5 1053 361 164 16 0 chr3 61344302 61344363 -98255420 + HAL1-3A_ME LINE L1 1976 2037 -821 5 1053 1504 129 113 4 chr3 61344811 61345068 -98254715 - Lx2 LINE L1 -5 6992 6708 5 1053 1946 116 74 35 chr3 61345068 61345380 -98254403 + Lx2 LINE L1 6406 6729 -268 5 1053 239 364 49 83 chr3 61346647 61346851 -98252932 + LTR16A1 LTR ERVL 161 357 -99 5 1053 4365 70 0 3 chr3 61348789 61349361 -98250422 + L1Md_F2 LINE L1 6008 6577 -5 5 1053 303 341 63 18 chr3 61349363 61349697 -98250086 + L1MB1 LINE L1 4895 5243 -897 5 1053 376 278 17 0 chr3 61349725 61349840 -98249943 + Lx7 LINE L1 7579 7695 -1 5 1053 752 292 82 27 chr3 61349971 61350422 -98249361 + L1MB1 LINE L1 5423 5898 -291 5 1053 246 370 14 0 chr3 61350424 61350497 -98249286 + ID4_ SINE ID 3 76 -7 5 1053 253 336 47 103 chr3 61350849 61350973 -98248810 - RMER12 LTR ERVK -251 1071 969 5 1053 503 357 77 18 chr3 61350973 61351247 -98248536 + B4 SINE B4 1 290 -2 5 1053 253 336 47 103 chr3 61351247 61351292 -98248491 - RMER12 LTR ERVK -354 968 926 5 1053 270 0 0 0 chr3 61351292 61351322 -98248461 + (CA)n Simple_repeat Simple_repeat 2 31 0 5 1053 253 336 47 103 chr3 61351322 61351470 -98248313 - RMER12 LTR ERVK -397 925 771 5 1053 327 312 50 22 chr3 61353663 61353843 -98245940 - Lx7 LINE L1 -3 7693 7509 5 1053 395 308 50 42 chr3 61354855 61355116 -98244667 - L1MC4 LINE L1 -4575 1640 1378 5 1053 271 319 66 6 chr3 61355902 61356085 -98243698 + L1_Mur2 LINE L1 2189 2382 -3495 5 1053 387 291 76 52 chr3 61356123 61356285 -98243498 + B3 SINE B2 2 170 -46 5 1053 222 62 0 0 chr3 61356285 61356317 -98243466 + (CA)n Simple_repeat Simple_repeat 1 32 0 5 1053 387 291 76 52 chr3 61356317 61356364 -98243419 + B3 SINE B2 171 216 0 5 1053 529 270 44 8 chr3 61356474 61356691 -98243092 + L1_Rod LINE L1 2537 2760 -3087 5 1053 844 107 0 0 chr3 61356693 61356815 -98242968 + B1_Mm SINE Alu 26 147 0 5 1053 882 245 19 10 chr3 61356922 61357128 -98242655 + B3 SINE B2 3 210 -6 5 1053 314 153 0 63 chr3 61357300 61357363 -98242420 + HAL1-3A_ME LINE L1 1976 2034 -824 5 1053 246 223 52 31 chr3 61357448 61357475 -98242308 + L1_Rod LINE L1 3663 3694 -2452 5 1053 351 44 0 0 chr3 61357475 61357520 -98242263 + (CA)n Simple_repeat Simple_repeat 2 46 0 5 1053 441 0 0 0 chr3 61357520 61357568 -98242215 + (GA)n Simple_repeat Simple_repeat 2 50 0 5 1053 313 248 0 47 chr3 61357568 61357657 -98242126 + L1_Rod LINE L1 3661 3745 -2135 5 1053 476 309 139 27 chr3 61357644 61358163 -98241620 + L1M2 LINE L1 4028 4604 -1539 5 1053 329 343 9 45 chr3 61358218 61358328 -98241455 - RSINE1 SINE B4 -54 111 6 5 1053 536 332 31 34 chr3 61358335 61358692 -98241091 + L1M2 LINE L1 4612 4979 -1164 5 1053 189 0 0 0 chr3 61358692 61358713 -98241070 + (TAA)n Simple_repeat Simple_repeat 2 22 0 5 1053 589 346 59 0 chr3 61358728 61358930 -98240853 + B4A SINE B4 3 216 -76 5 1053 22 0 0 0 chr3 61358930 61358952 -98240831 + AT_rich Low_complexity Low_complexity 1 22 0 5 1053 17669 12 0 0 chr3 61359029 61361743 -98238040 - L1Md_A LINE L1 0 6582 3868 5 1053 258 289 11 11 chr3 61361838 61361929 -98237854 + (CA)n Simple_repeat Simple_repeat 2 92 0 5 1053 1208 325 82 32 chr3 61362430 61363593 -98236190 + L1_Mur3 LINE L1 1258 2479 -3401 5 1053 2455 209 27 44 chr3 61363594 61363990 -98235793 + RLTR20B3 LTR ERVK 1 389 -188 5 1053 360 0 0 0 chr3 61363990 61364030 -98235753 + (TG)n Simple_repeat Simple_repeat 1 40 0 5 1053 2455 209 27 44 chr3 61364030 61364220 -98235563 + RLTR20B3 LTR ERVK 390 577 0 5 1053 3298 271 83 36 chr3 61364240 61365801 -98233982 + L1_Mur3 LINE L1 2485 4117 -1763 5 1053 527 319 31 0 chr3 61365815 61365975 -98233808 + B3A SINE B2 2 166 -32 5 1053 1032 301 91 18 chr3 61365976 61366470 -98233313 + Lx9 LINE L1 7087 7616 -28 5 1053 5515 143 70 10 chr3 61366541 61367515 -98232268 - Lx2 LINE L1 0 6997 5966 5 1053 2338 132 113 13 chr3 61367521 61368052 -98231731 - Lx2 LINE L1 -352 6645 6024 5 1053 862 149 131 0 chr3 61368046 61368214 -98231569 - Lx2 LINE L1 -870 6127 5938 5 1053 2466 112 5 28 chr3 61368257 61368651 -98231132 - L1VL4 LINE L1 -1432 2127 1743 5 1053 537 44 0 0 chr3 61368893 61368961 -98230822 + (TA)n Simple_repeat Simple_repeat 1 68 0 5 1053 33869 73 3 0 chr3 61368961 61375114 -98224669 - L1Md_F2 LINE L1 -22 6560 387 5 1053 5558 124 8 24 chr3 61375115 61376686 -98223097 - L1VL4 LINE L1 -1828 1731 186 5 1053 1816 66 95 68 chr3 61378306 61378600 -98221183 + L1_Mus2 LINE L1 6265 6566 0 5 1053 22 0 0 0 chr3 61379926 61379948 -98219835 + AT_rich Low_complexity Low_complexity 1 22 0 5 1053 1195 288 66 24 chr3 61380504 61380914 -98218869 + Lx9 LINE L1 6376 6802 -842 5 1053 444 37 0 0 chr3 61380958 61381012 -98218771 + (TG)n Simple_repeat Simple_repeat 1 54 0 5 1053 8242 58 11 4 chr3 61381036 61382645 -98217138 - L1Md_F2 LINE L1 0 6582 5154 5 1053 388 224 0 0 chr3 61382633 61382731 -98217052 - L1_Mur3 LINE L1 -4431 1446 1349 5 1053 482 229 24 89 chr3 61383068 61383236 -98216547 - L1_Mur3 LINE L1 -4524 1353 1197 5 1053 655 359 23 78 chr3 61383247 61383555 -98216228 - B4A SINE B4 -1 291 1 5 1053 258 32 0 0 chr3 61384721 61384752 -98215031 + (TG)n Simple_repeat Simple_repeat 2 32 0 5 1053 552 340 20 10 chr3 61384756 61384955 -98214828 + MTEb LTR MaLR 15 215 -164 5 1053 231 114 0 0 chr3 61384955 61384990 -98214793 + (TCCC)n Simple_repeat Simple_repeat 3 37 0 5 1053 427 340 98 12 chr3 61384992 61385156 -98214627 + MTEb LTR MaLR 202 379 0 5 1053 2927 319 109 44 chr3 61385155 61385306 -98214477 + MTEb-int LTR MaLR 2 150 -1430 5 1053 357 24 0 0 chr3 61385306 61385348 -98214435 + (TA)n Simple_repeat Simple_repeat 2 43 0 5 1053 2927 319 109 44 chr3 61385348 61386563 -98213220 + MTEb-int LTR MaLR 151 1460 -120 5 1053 297 0 0 0 chr3 61386563 61386596 -98213187 + (TG)n Simple_repeat Simple_repeat 2 34 0 5 1053 2927 319 109 44 chr3 61386596 61386708 -98213075 + MTEb-int LTR MaLR 1461 1578 -2 5 1053 423 154 275 0 chr3 61386712 61386803 -98212980 + MTEb LTR MaLR 3 118 -261 5 1053 394 320 115 49 chr3 61386967 61387253 -98212530 - MER89 LTR ERV1 -75 484 180 5 1053 2518 72 127 11 chr3 61387816 61387991 -98211792 + BGLII_Mus LTR ERVK 1 216 -206 5 1053 600 14 0 0 chr3 61387991 61388060 -98211723 + (GA)n Simple_repeat Simple_repeat 1 69 0 5 1053 2518 72 127 11 chr3 61388060 61388262 -98211521 + BGLII_Mus LTR ERVK 217 421 -1 5 1053 297 0 0 0 chr3 61388302 61388335 -98211448 + (TA)n Simple_repeat Simple_repeat 2 34 0 5 1053 208 216 0 0 chr3 61388950 61388987 -98210796 + (CATG)n Simple_repeat Simple_repeat 2 38 0 5 1053 464 187 22 0 chr3 61389300 61389391 -98210392 - RLTR11A LTR ERVK 0 528 436 5 1053 22 35 0 0 chr3 61389391 61389420 -98210363 + AT_rich Low_complexity Low_complexity 1 29 0 5 1053 8260 137 48 23 chr3 61389425 61391074 -98208709 - Lx4A LINE L1 -1 7057 5354 5 1053 3094 37 8 0 chr3 61391074 61391451 -98208332 - L1Md_F2 LINE L1 -3 6579 6200 5 1053 3566 117 34 25 chr3 61391451 61391529 -98208254 - Lx4A LINE L1 -524 5353 5283 5 1053 4763 83 26 0 chr3 61391574 61392215 -98207568 - Lx3_Mus LINE L1 0 7009 6352 5 1053 644 42 13 0 chr3 61392216 61392320 -98207463 - Lx3_Mus LINE L1 -1066 5943 5835 5 1053 2260 85 3 15 chr3 61392319 61392654 -98207129 + L1_Mur1 LINE L1 4952 5282 -604 5 1053 328 111 273 107 chr3 61392654 61392775 -98207008 - RLTR11A2 LTR ERVK -386 141 1 5 1053 500 325 23 12 chr3 61393659 61393830 -98205953 + MER45A DNA Tip100 6 178 0 5 1053 448 401 25 4 chr3 61393944 61394219 -98205564 + L1MD2 LINE L1 764 1044 -5503 5 1053 25 31 0 0 chr3 61395013 61395045 -98204738 + AT_rich Low_complexity Low_complexity 1 32 0 5 1053 243 0 0 0 chr3 61395733 61395760 -98204023 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 5 1053 1043 116 0 0 chr3 61395760 61395906 -98203877 - B1_Mus1 SINE Alu -2 146 1 5 1053 21 82 0 0 chr3 61396028 61396077 -98203706 + AT_rich Low_complexity Low_complexity 1 49 0 5 1053 947 134 19 19 chr3 61397282 61397442 -98202341 - B2_Mm2 SINE B2 -8 187 28 5 1053 454 294 54 27 chr3 61397673 61397820 -98201963 + RMER13A LTR ERVK 1 151 -709 5 1053 2780 49 0 0 chr3 61397824 61398211 -98201572 - L1Md_F3 LINE L1 -665 5919 5533 5 1053 1387 63 16 0 chr3 61398212 61398401 -98201382 + L1Md_F3 LINE L1 6393 6584 0 5 1053 309 269 54 0 chr3 61398807 61398900 -98200883 - L1M3 LINE L1 -1960 4180 4083 5 1053 188 34 0 33 chr3 61398910 61398940 -98200843 + (TTTTG)n Simple_repeat Simple_repeat 3 31 0 5 1053 1019 110 7 0 chr3 61398948 61399094 -98200689 - B1_Mm SINE Alu 0 147 1 5 1053 303 364 110 58 chr3 61399232 61399678 -98200105 + L1MCb LINE L1 75 543 -5502 5 1053 398 264 107 0 chr3 61399830 61399989 -98199794 + L1MCb LINE L1 885 1060 -4985 5 1053 487 330 101 16 chr3 61400626 61400818 -98198965 - B3A SINE B2 -6 210 1 5 1053 238 368 11 73 chr3 61402625 61402804 -98196979 + L2c LINE L2 3218 3385 -2 5 1053 229 222 16 0 chr3 61404115 61404178 -98195605 + (CAA)n Simple_repeat Simple_repeat 2 65 0 5 1053 381 43 0 0 chr3 61404769 61404816 -98194967 + (CA)n Simple_repeat Simple_repeat 1 47 0 5 1053 547 308 0 0 chr3 61404845 61404991 -98194792 - RSINE1 SINE B4 -8 157 12 5 1053 494 288 77 13 chr3 61405096 61405251 -98194532 + MER5B DNA MER1_type 7 171 -7 5 1053 1878 109 0 84 chr3 61405905 61406226 -98193557 + Lx3_Mus LINE L1 6716 7009 0 5 1053 1443 169 18 11 chr3 61406419 61406695 -98193088 + L1_Mur3 LINE L1 4772 5049 -831 5 1053 236 258 0 0 chr3 61406712 61406778 -98193005 - L1M3 LINE L1 -284 5896 5831 5 1053 564 285 81 20 chr3 61407022 61407219 -98192564 + MER20 DNA MER1_type 10 218 -1 5 1053 545 52 13 0 chr3 61407628 61407705 -98192078 + (CCAA)n Simple_repeat Simple_repeat 2 79 0 5 1053 396 0 0 0 chr3 61407816 61407860 -98191923 + (CAAAA)n Simple_repeat Simple_repeat 5 48 0 5 1053 23 33 0 0 chr3 61408351 61408381 -98191402 + AT_rich Low_complexity Low_complexity 1 30 0 5 1053 626 320 39 6 chr3 61408745 61408924 -98190859 - B3 SINE B2 0 216 32 5 1053 186 382 118 0 chr3 61409687 61409797 -98189986 + MIR3 SINE MIR 47 169 -39 5 1053 753 322 57 44 chr3 61410062 61410602 -98189181 + L1MB2 LINE L1 5280 5826 -345 5 1053 21 71 0 0 chr3 61410919 61410961 -98188822 + AT_rich Low_complexity Low_complexity 1 42 0 5 1053 1025 69 0 0 chr3 61410969 61411100 -98188683 - B1_Mus1 SINE Alu -4 144 14 5 1053 524 134 10 2 chr3 61411204 61411290 -98188493 + B1_Mus1 SINE Alu 2 92 -57 5 1053 238 337 96 60 chr3 61411497 61411715 -98188068 + MIRb SINE MIR 7 232 -36 5 1053 1160 68 0 7 chr3 61412473 61412607 -98187176 + B1_Mus1 SINE Alu 2 135 -13 5 1053 228 35 0 0 chr3 61412607 61412636 -98187147 + (CAAA)n Simple_repeat Simple_repeat 1 29 0 5 1053 1160 68 0 7 chr3 61412636 61412649 -98187134 + B1_Mus1 SINE Alu 136 148 0 5 1053 21 36 0 0 chr3 61412651 61412679 -98187104 + AT_rich Low_complexity Low_complexity 1 28 0 6 1053 275 338 0 0 chr3 61414054 61414128 -98185655 + ID_B1 SINE B4 84 157 -67 6 1053 292 368 131 30 chr3 61414128 61414296 -98185487 + B3 SINE B2 2 186 -30 6 1053 279 0 0 0 chr3 61414301 61414332 -98185451 + (CA)n Simple_repeat Simple_repeat 2 32 0 6 1053 24 0 0 0 chr3 61414494 61414518 -98185265 + AT_rich Low_complexity Low_complexity 1 24 0 6 1053 266 375 0 0 chr3 61414566 61414638 -98185145 - MER81 DNA AcHobo -10 104 33 6 1053 503 86 12 0 chr3 61415133 61415214 -98184569 - Lx2 LINE L1 -3 6994 6913 6 1053 242 95 24 0 chr3 61415669 61415711 -98184072 + (TTTTTG)n Simple_repeat Simple_repeat 4 46 0 6 1053 349 301 50 22 chr3 61415714 61415853 -98183930 - L2a LINE L2 -52 3374 3232 6 1053 644 21 43 0 chr3 61416795 61416889 -98182894 + (TCTA)n Simple_repeat Simple_repeat 1 98 0 6 1053 285 315 0 59 chr3 61416900 61417018 -98182765 - BC1_Mm scRNA scRNA -36 116 6 6 1053 647 342 69 17 chr3 61417340 61417572 -98182211 + B4 SINE B4 1 244 -48 6 1053 3399 212 63 27 chr3 61418589 61419368 -98180415 + Lx7 LINE L1 6605 7411 -285 6 1053 374 345 71 0 chr3 61420147 61420315 -98179468 - MER20 DNA MER1_type -1 218 39 6 1053 537 44 0 0 chr3 61421843 61421911 -98177872 + (TA)n Simple_repeat Simple_repeat 1 68 0 6 1053 346 307 129 46 chr3 61422736 61423016 -98176767 + L1M2 LINE L1 5025 5327 -816 6 1053 994 245 49 36 chr3 61423019 61423324 -98176459 + L1_Mur3 LINE L1 299 607 -7105 6 1053 459 0 0 0 chr3 61423331 61423382 -98176401 + (TA)n Simple_repeat Simple_repeat 2 52 0 6 1053 4180 27 0 4 chr3 61423404 61423890 -98175893 - L1Md_F2 LINE L1 -12 6570 6087 6 1053 4463 67 2 2 chr3 61423890 61424684 -98175099 + L1Md_F2 LINE L1 5309 6102 -482 6 1053 4509 212 64 33 chr3 61424672 61425615 -98174168 + L1_Mur3 LINE L1 135 1098 -6630 6 1053 459 0 0 0 chr3 61425615 61425666 -98174117 + (CA)n Simple_repeat Simple_repeat 2 52 0 6 1053 4509 175 116 14 chr3 61425666 61426146 -98173637 + L1_Mur3 LINE L1 1099 1642 -4238 6 1053 237 128 0 0 chr3 61426166 61426213 -98173570 + (CAAAA)n Simple_repeat Simple_repeat 2 48 0 6 1053 3167 213 77 111 chr3 61426214 61426563 -98173220 + Lx7 LINE L1 6705 7075 -621 6 1053 1067 68 0 0 chr3 61426563 61426696 -98173087 + B1_Mus1 SINE Alu 5 137 -11 6 1053 207 0 0 0 chr3 61426696 61426719 -98173064 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 6 1053 3167 213 77 111 chr3 61426719 61427391 -98172392 + Lx7 LINE L1 7076 7692 -4 6 1053 309 288 263 0 chr3 61427417 61427569 -98172214 + ORR1D1 LTR MaLR 36 234 -144 6 1053 567 295 53 38 chr3 61427622 61427998 -98171785 + L1M2 LINE L1 5328 5723 -568 6 1053 720 223 85 35 chr3 61427998 61428198 -98171585 - ORR1C2 LTR MaLR 0 384 175 6 1053 28 71 0 0 chr3 61428934 61428990 -98170793 + AT_rich Low_complexity Low_complexity 1 56 0 6 1053 1271 246 68 46 chr3 61429625 61430035 -98169748 + MTD LTR MaLR 1 419 0 6 1053 25 0 0 0 chr3 61431429 61431454 -98168329 + AT_rich Low_complexity Low_complexity 1 25 0 6 1053 2611 114 2 22 chr3 61432690 61433094 -98166689 + MTA_Mm LTR MaLR 1 396 0 6 1053 8003 80 6 4 chr3 61433095 61434186 -98165597 + MTA_Mm-int LTR MaLR 2 1095 -3 6 1053 2687 104 2 20 chr3 61434189 61434592 -98165191 + MTA_Mm LTR MaLR 1 396 0 6 1053 22 0 0 0 chr3 61435390 61435412 -98164371 + AT_rich Low_complexity Low_complexity 1 22 0 6 1053 1724 56 13 0 chr3 61435898 61436130 -98163653 - L1_Mus2 LINE L1 -596 5970 5736 6 1053 4687 64 0 16 chr3 61436131 61436738 -98163045 + L1_Mus2 LINE L1 5970 6566 0 6 1053 225 127 91 0 chr3 61437777 61437832 -98161951 + (CCTA)n Simple_repeat Simple_repeat 2 61 0 6 1053 543 192 6 12 chr3 61437837 61438006 -98161777 + CT-rich Low_complexity Low_complexity 4 171 0 6 1053 189 0 0 0 chr3 61438091 61438112 -98161671 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 6 1053 313 265 73 20 chr3 61438487 61438637 -98161146 - L1M2 LINE L1 -623 5668 5511 6 1053 307 346 38 30 chr3 61438744 61438875 -98160908 - B1_Mus2 SINE Alu -14 133 2 6 1053 705 301 63 101 chr3 61439028 61439285 -98160498 - L1M2 LINE L1 -1455 4688 4456 6 1053 871 78 66 52 chr3 61439285 61439421 -98160362 + B1_Mus1 SINE Alu 1 138 -10 6 1053 705 301 63 101 chr3 61439421 61440076 -98159707 - L1M2 LINE L1 -1688 4455 3810 6 1053 417 336 0 47 chr3 61440080 61440252 -98159531 - ID_B1 SINE B4 -11 213 56 6 1053 29284 39 2 3 chr3 61440478 61446948 -98152835 - L1Md_T LINE L1 0 6585 27 6 1053 9519 72 1 1 chr3 61447087 61448389 -98151394 + L1Md_F2 LINE L1 2700 4001 -1882 6 1053 7131 83 4 1 chr3 61448387 61449355 -98150428 + L1Md_F2 LINE L1 4615 5585 -298 6 1053 7384 82 4 1 chr3 61449356 61450345 -98149438 + L1Md_F2 LINE L1 5587 6578 -4 6 1053 369 0 0 0 chr3 61450634 61450675 -98149108 + (TA)n Simple_repeat Simple_repeat 2 42 0 6 1053 1619 86 39 4 chr3 61451181 61451414 -98148369 - L1Md_F2 LINE L1 -2 6580 6340 6 1053 1859 36 0 0 chr3 61451414 61451633 -98148150 + L1Md_F2 LINE L1 6103 6321 -261 6 1053 724 138 18 121 chr3 61451882 61451997 -98147786 - L1_Mm LINE L1 -484 5399 5302 6 1053 1105 75 7 7 chr3 61451997 61452144 -98147639 - B1_Mus1 SINE Alu -1 147 1 6 1053 724 138 18 121 chr3 61452144 61452193 -98147590 - L1_Mm LINE L1 -582 5301 5252 6 1053 10913 104 16 5 chr3 61452235 61454646 -98145137 - L1_Mus3 LINE L1 0 6638 4198 6 1053 1607 90 58 8 chr3 61454646 61454904 -98144879 + L1_Mus3 LINE L1 6364 6634 -4 6 1053 854 53 0 0 chr3 61455355 61455469 -98144314 - L1_Mus1 LINE L1 -1 6566 6453 6 1053 285 131 0 0 chr3 61456094 61456155 -98143628 + (T)n Simple_repeat Simple_repeat 1 61 0 6 1053 3524 36 0 0 chr3 61457908 61458328 -98141455 - L1Md_T LINE L1 0 6582 6163 6 1053 1166 245 108 30 chr3 61458730 61459163 -98140620 + RMER5 LTR ERV1 2 468 -66 6 1053 737 204 15 0 chr3 61461005 61461142 -98138641 + B1_Mur3 SINE Alu 10 148 -1 6 1053 393 308 107 27 chr3 61461899 61461980 -98137803 - RLTR20A2 LTR ERVK -4 574 492 6 1053 315 71 0 0 chr3 61461980 61462022 -98137761 + (CA)n Simple_repeat Simple_repeat 2 43 0 6 1053 393 308 107 27 chr3 61462022 61462090 -98137693 - RLTR20A2 LTR ERVK -87 491 413 6 1053 633 221 28 26 chr3 61462076 61462299 -98137484 - RLTR20A2 LTR ERVK -299 269 1 6 1053 221 311 146 36 chr3 61464133 61464270 -98135513 + L2a LINE L2 3196 3347 -79 6 1053 233 146 21 0 chr3 61464737 61464785 -98134998 + (TA)n Simple_repeat Simple_repeat 1 49 0 6 1053 2778 181 95 40 chr3 61465136 61465790 -98133993 + RMER6C LTR ERVK 1 690 0 6 1053 989 61 8 0 chr3 61466902 61467034 -98132749 - B1_Mus2 SINE Alu -1 146 14 6 1053 180 0 0 0 chr3 61467875 61467895 -98131888 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 6 1053 222 382 74 29 chr3 61469918 61470093 -98129690 + MIR3 SINE MIR 17 199 -9 6 1053 288 358 21 0 chr3 61470664 61470759 -98129024 + MIR SINE MIR 92 188 -74 6 1053 24 53 0 0 chr3 61471860 61471898 -98127885 + AT_rich Low_complexity Low_complexity 1 38 0 6 1053 231 313 194 25 chr3 61472132 61472330 -98127453 - L2b LINE L2 -262 3164 2931 6 1053 1127 72 0 0 chr3 61472332 61472471 -98127312 + B1_Mus2 SINE Alu 1 139 -8 6 1053 315 0 0 0 chr3 61472474 61472509 -98127274 + (A)n Simple_repeat Simple_repeat 1 35 0 6 1054 198 387 135 10 chr3 61472857 61473050 -98126733 - MIRb SINE MIR -44 224 8 6 1054 180 338 14 40 chr3 61474332 61474406 -98125377 - L2b LINE L2 -2721 698 627 6 1054 2042 161 19 3 chr3 61474758 61475119 -98124664 - ORR1B2 LTR MaLR 0 367 1 6 1054 711 123 0 0 chr3 61475390 61475512 -98124271 + (TATG)n Simple_repeat Simple_repeat 2 123 0 6 1054 2905 103 0 7 chr3 61475716 61476125 -98123658 - L1_Mm LINE L1 -190 5693 5288 6 1054 8288 32 0 0 chr3 61476119 61477413 -98122370 - L1Md_T LINE L1 -1 6581 5288 6 1054 36016 5 0 1 chr3 61477407 61482195 -98117588 - L1Md_A LINE L1 0 6582 1801 6 1054 379 176 14 0 chr3 61482191 61482265 -98117518 - L1_Mm LINE L1 -913 4970 4896 6 1054 526 269 71 13 chr3 61482678 61482839 -98116944 - Lx7 LINE L1 -1558 5915 5727 6 1054 344 59 20 0 chr3 61482839 61482890 -98116893 + (TA)n Simple_repeat Simple_repeat 2 53 0 6 1054 526 264 72 12 chr3 61482890 61482935 -98116848 - Lx7 LINE L1 -1936 5760 5677 6 1054 337 394 22 17 chr3 61483570 61483748 -98116035 + MLT1J LTR MaLR 105 283 -229 6 1054 212 167 21 0 chr3 61484232 61484280 -98115503 + CT-rich Low_complexity Low_complexity 1 49 0 6 1054 360 0 0 0 chr3 61484282 61484322 -98115461 + (CA)n Simple_repeat Simple_repeat 2 41 0 6 1054 291 308 138 6 chr3 61485080 61485240 -98114543 - Lx8 LINE L1 -29 7444 7264 6 1054 329 267 0 0 chr3 61485241 61485316 -98114467 - Lx8 LINE L1 -147 7326 7252 6 1054 224 314 38 53 chr3 61485541 61485672 -98114111 - MIR SINE MIR -58 204 76 6 1054 1062 295 95 14 chr3 61485862 61486566 -98113217 - L1MA5 LINE L1 -368 5932 5118 6 1054 304 253 200 0 chr3 61486913 61486988 -98112795 - RSINE1 SINE B4 -33 132 43 6 1054 1878 68 15 19 chr3 61487282 61487553 -98112230 - L1_Mus3 LINE L1 -2 6636 6367 6 1054 361 184 13 13 chr3 61488241 61488284 -98111499 + L1_Mm LINE L1 5544 5586 -297 6 1054 8660 18 0 6 chr3 61488284 61489286 -98110497 + L1Md_A LINE L1 5587 6582 0 6 1054 361 184 13 13 chr3 61489286 61489319 -98110464 + L1_Mm LINE L1 5587 5620 -263 6 1054 1132 64 0 0 chr3 61489332 61489473 -98110310 + B1_Mus1 SINE Alu 1 141 -7 6 1054 190 0 67 0 chr3 61489473 61489503 -98110280 + (CAA)n Simple_repeat Simple_repeat 2 33 0 6 1054 22 0 0 0 chr3 61490062 61490084 -98109699 + AT_rich Low_complexity Low_complexity 1 22 0 6 1054 186 43 0 0 chr3 61490981 61491004 -98108779 + (T)n Simple_repeat Simple_repeat 1 23 0 6 1054 1064 102 0 0 chr3 61491006 61491153 -98108630 - B1_Mus1 SINE Alu -1 147 1 6 1054 291 140 0 0 chr3 61491210 61491260 -98108523 + (TG)n Simple_repeat Simple_repeat 2 51 0 6 1054 207 100 0 0 chr3 61492221 61492251 -98107532 + (CAAA)n Simple_repeat Simple_repeat 3 32 0 6 1054 23 33 0 0 chr3 61493003 61493033 -98106750 + AT_rich Low_complexity Low_complexity 1 30 0 6 1054 422 248 26 26 chr3 61493078 61493156 -98106627 - B1_Mur1 SINE Alu -1 148 74 6 1054 4438 147 3 8 chr3 61493156 61493884 -98105899 - Lx LINE L1 0 6654 5931 6 1054 422 248 26 26 chr3 61493884 61493908 -98105875 - B1_Mur1 SINE Alu -76 73 47 6 1054 733 223 405 0 chr3 61493908 61494128 -98105655 - RLTR27 LTR ERVK 0 309 1 6 1054 374 302 107 21 chr3 61494977 61495325 -98104458 + MLT2B4 LTR ERVL 48 446 -110 6 1054 198 0 0 0 chr3 61495412 61495434 -98104349 + (ATG)n Simple_repeat Simple_repeat 2 23 0 6 1054 714 258 93 19 chr3 61495945 61496318 -98103465 - MLT2B4 LTR ERVL -124 391 3 6 1054 4670 208 25 25 chr3 61497443 61498410 -98101373 + Lx5 LINE L1 5799 6765 -285 6 1054 211 259 17 0 chr3 61498441 61498499 -98101284 + GA-rich Low_complexity Low_complexity 2 60 0 7 1054 938 223 59 5 chr3 61499727 61499930 -98099853 + B3 SINE B2 1 214 -2 7 1054 210 208 0 0 chr3 61500314 61500362 -98099421 + (TG)n Simple_repeat Simple_repeat 2 49 0 1 1054 274 353 106 31 chr3 61500712 61500873 -98098910 + L2b LINE L2 3199 3371 -4 2 1054 187 349 115 39 chr3 61501711 61501893 -98097890 - L2a LINE L2 -174 3252 3057 3 1054 3072 223 20 17 chr3 61504028 61504845 -98094938 - L1_Mur3 LINE L1 -3859 2021 1203 4 1054 1449 211 25 30 chr3 61504817 61505212 -98094571 - L1_Mur3 LINE L1 -6459 1269 877 4 1054 238 290 63 36 chr3 61505438 61505549 -98094234 + MLT1F-int LTR MaLR 1235 1348 -141 5 1054 774 294 52 24 chr3 61505730 61506361 -98093422 + L1_Rod LINE L1 908 1560 -4287 6 1054 1913 292 39 0 chr3 61506359 61506876 -98092907 + Lx6 LINE L1 6915 7451 -9 7 1054 1286 243 42 29 chr3 61506890 61507339 -98092444 + L1_Rod LINE L1 1556 2010 -3837 6 1054 1646 321 74 42 chr3 61507342 61508359 -98091424 + Lx8 LINE L1 6414 7462 -11 8 1054 200 267 0 32 chr3 61508559 61508621 -98091162 + A-rich Low_complexity Low_complexity 3 62 0 9 1054 22 0 0 0 chr3 61508644 61508666 -98091117 + AT_rich Low_complexity Low_complexity 1 22 0 1 1054 457 304 31 16 chr3 61508734 61508861 -98090922 + RSINE1 SINE B4 29 157 -8 1 1054 887 332 72 24 chr3 61509080 61509661 -98090122 - L1_Rod LINE L1 -3353 2494 1886 1 1054 197 250 0 0 chr3 61510457 61510497 -98089286 + MER5A DNA MER1_type 146 185 -4 1 1054 2990 18 0 0 chr3 61511505 61511842 -98087941 - IAPLTR1a_Mm LTR ERVK 0 337 1 1 1054 29204 10 2 0 chr3 61511842 61515074 -98084709 - IAPEz-int LTR ERVK 0 6481 3244 1 1054 22478 30 19 18 chr3 61515066 61517808 -98081975 - IAPEz-int LTR ERVK -3730 2751 8 1 1054 2990 18 0 0 chr3 61517808 61518145 -98081638 - IAPLTR1a_Mm LTR ERVK 0 337 1 1 1054 22 35 0 0 chr3 61518167 61518196 -98081587 + AT_rich Low_complexity Low_complexity 1 29 0 1 1054 804 329 37 24 chr3 61519373 61519619 -98080164 - MTEa LTR MaLR -117 262 14 1 1054 441 315 66 17 chr3 61519679 61519860 -98079923 + MER67B LTR ERV1 1 190 -471 1 1054 449 290 28 84 chr3 61519982 61520125 -98079658 + B4A SINE B4 8 142 -150 1 1054 2001 173 135 42 chr3 61520125 61520549 -98079234 + RLTR20A LTR ERVK 1 439 -102 1 1054 234 62 0 0 chr3 61520549 61520581 -98079202 + (TG)n Simple_repeat Simple_repeat 2 33 0 2 1054 2001 173 135 42 chr3 61520581 61520651 -98079132 + RLTR20A LTR ERVK 440 540 -1 1 1054 234 268 139 14 chr3 61520706 61520778 -98079005 + B4 SINE B4 200 280 -12 1 1054 368 311 262 19 chr3 61520874 61521130 -98078653 + MER67B LTR ERV1 339 656 -5 1 1054 2254 151 22 68 chr3 61521382 61521793 -98077990 - ORR1B1 LTR MaLR 0 394 3 2 1054 357 284 130 58 chr3 61521889 61522304 -98077479 + L1MD LINE L1 2827 3271 -2875 2 1054 1339 87 27 0 chr3 61523826 61524009 -98075774 + B2_Mm2 SINE B2 1 188 -7 2 1054 35354 35 0 0 chr3 61524020 61529460 -98070323 + L1Md_T LINE L1 53 5589 -297 2 1054 8945 6 0 0 chr3 61529460 61530456 -98069327 + L1Md_T LINE L1 5590 6585 0 2 1054 254 235 0 0 chr3 61530641 61530692 -98069091 + RMER30 DNA MER1_type 8 58 -144 2 1054 397 288 56 43 chr3 61530689 61530815 -98068968 + ORR1D1 LTR MaLR 47 187 -197 2 1054 417 20 0 0 chr3 61530815 61530865 -98068918 + (TC)n Simple_repeat Simple_repeat 1 50 0 2 1054 342 288 50 50 chr3 61530865 61530896 -98068887 + ORR1D1 LTR MaLR 188 214 -170 2 1054 230 271 67 56 chr3 61530909 61530999 -98068784 + RMER30 DNA MER1_type 92 182 -20 2 1054 282 320 118 51 chr3 61531202 61531326 -98068457 - Lx8 LINE L1 0 7473 7330 2 1054 519 31 0 0 chr3 61531326 61531391 -98068392 + (TAG)n Simple_repeat Simple_repeat 1 65 0 2 1054 282 320 118 51 chr3 61531391 61531503 -98068280 - Lx8 LINE L1 -144 7329 7222 2 1054 22 56 0 0 chr3 61531539 61531575 -98068208 + AT_rich Low_complexity Low_complexity 1 36 0 3 1054 619 246 49 54 chr3 61531684 61531869 -98067914 - Lx8 LINE L1 -280 7193 7010 2 1054 1584 217 57 19 chr3 61531869 61532058 -98067725 - ORR1C2 LTR MaLR 0 419 193 3 1054 222 37 0 0 chr3 61532058 61532085 -98067698 + (CA)n Simple_repeat Simple_repeat 2 28 0 3 1054 261 0 0 0 chr3 61532085 61532113 -98067670 + (GA)n Simple_repeat Simple_repeat 2 30 0 3 1054 1584 209 57 14 chr3 61532113 61532292 -98067491 - ORR1C2 LTR MaLR -192 192 2 3 1054 482 286 54 13 chr3 61532292 61532441 -98067342 - Lx8 LINE L1 -1082 6391 6237 2 1054 1223 313 48 37 chr3 61532438 61533162 -98066621 - Lx8 LINE L1 -202 5678 4947 2 1054 476 281 21 5 chr3 61533153 61533339 -98066444 - L1M2 LINE L1 -1337 4806 4618 3 1054 235 130 37 0 chr3 61533515 61533569 -98066214 + (TG)n Simple_repeat Simple_repeat 2 57 0 3 1054 699 190 7 53 chr3 61533632 61533646 -98066137 - B1_Mm SINE Alu 0 147 137 3 1054 221 0 35 0 chr3 61533646 61533675 -98066108 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 3 1054 699 190 7 53 chr3 61533675 61533810 -98065973 - B1_Mm SINE Alu -11 136 5 3 1054 5181 186 84 54 chr3 61535483 61537306 -98062477 - Lx5 LINE L1 -99 6951 5128 3 1054 7020 156 41 15 chr3 61537306 61538452 -98061331 - Lx5 LINE L1 -1948 3929 2743 3 1054 4271 28 0 0 chr3 61538452 61538945 -98060838 + MT2_Mm LTR ERVL 1 493 0 3 1054 7020 156 41 15 chr3 61538945 61539176 -98060607 - Lx5 LINE L1 -3135 2742 2517 3 1054 559 249 227 0 chr3 61539217 61539402 -98060381 - ORR1B1 LTR MaLR -167 227 1 4 1054 236 336 45 0 chr3 61539563 61539645 -98060138 + B1F1 SINE Alu 3 96 -21 4 1054 1111 60 0 0 chr3 61540682 61540816 -98058967 + B1_Mus2 SINE Alu 1 134 -13 4 1054 360 45 29 29 chr3 61540816 61540884 -98058899 + (CAAA)n Simple_repeat Simple_repeat 1 68 0 4 1054 1625 247 19 120 chr3 61541483 61542049 -98057734 - RLTR18B LTR ERVK -3 509 1 4 1054 281 268 50 30 chr3 61542330 61542430 -98057353 - MamRep1161 DNA TcMar -814 143 42 4 1054 369 0 0 0 chr3 61542543 61542584 -98057199 + (TG)n Simple_repeat Simple_repeat 2 42 0 4 1054 234 91 0 0 chr3 61543756 61543789 -98055994 + (A)n Simple_repeat Simple_repeat 1 33 0 4 1054 29 0 0 0 chr3 61544682 61544711 -98055072 + AT_rich Low_complexity Low_complexity 1 29 0 4 1054 22 56 0 0 chr3 61544797 61544833 -98054950 + AT_rich Low_complexity Low_complexity 1 36 0 4 1054 449 333 15 7 chr3 61544836 61544873 -98054910 - RSINE1 SINE B4 0 165 130 5 1054 606 51 0 0 chr3 61544873 61544951 -98054832 + (CA)n Simple_repeat Simple_repeat 1 78 0 5 1054 449 333 15 7 chr3 61544951 61545049 -98054734 - RSINE1 SINE B4 -36 129 30 5 1054 1667 220 79 3 chr3 61545055 61545424 -98054359 - MTD LTR MaLR -7 412 16 5 1054 475 364 19 31 chr3 61545596 61545755 -98054028 + RSINE1 SINE B4 2 158 -7 5 1054 338 254 36 126 chr3 61546021 61546188 -98053595 - MER5A1 DNA MER1_type 0 166 15 5 1054 4100 55 0 2 chr3 61546518 61547032 -98052751 - L1Md_F2 LINE L1 -3 6579 6067 5 1054 19209 99 7 11 chr3 61547032 61550504 -98049279 - L1Md_A LINE L1 -2004 3879 420 5 1054 346 185 124 52 chr3 61550621 61550815 -98048968 - RMER17C LTR ERVK -135 275 68 5 1054 318 293 114 0 chr3 61550994 61551117 -98048666 + MER57C2 LTR ERV1 59 195 -239 5 1054 1757 203 113 3 chr3 61551373 61551743 -98048040 + MTC LTR MaLR 1 411 -10 5 1054 588 232 7 14 chr3 61552157 61552301 -98047482 + B1_Mus1 SINE Alu 1 143 -5 6 1054 399 307 28 29 chr3 61552688 61552847 -98046936 + B3A SINE B2 6 171 -24 6 1054 230 200 177 116 chr3 61553395 61553559 -98046224 + MER53 DNA hAT 1 174 -19 6 1054 634 279 130 8 chr3 61553739 61553985 -98045798 + RCHARR1 DNA MER1_type 4 279 -695 6 1054 26 50 0 0 chr3 61555105 61555145 -98044638 + AT_rich Low_complexity Low_complexity 1 40 0 6 1054 5960 185 61 16 chr3 61555509 61556427 -98043356 - Lx3C LINE L1 -2 6974 6044 6 1054 384 22 0 0 chr3 61556427 61556472 -98043311 + (TCCC)n Simple_repeat Simple_repeat 4 48 0 6 1054 5960 188 59 16 chr3 61556472 61556793 -98042990 - Lx3C LINE L1 -933 6043 5646 6 1054 286 344 92 23 chr3 61557602 61558078 -98041705 + L1_Rod LINE L1 1270 1778 -4069 6 1054 6582 201 41 13 chr3 61558097 61559703 -98040080 - Lx5 LINE L1 -5 7045 5379 6 1054 11601 150 13 16 chr3 61559705 61560033 -98039750 - Lx5 LINE L1 -1693 4184 3849 6 1054 351 60 0 0 chr3 61560033 61560083 -98039700 + (GTTTG)n Simple_repeat Simple_repeat 5 54 0 6 1054 246 81 0 0 chr3 61560090 61560127 -98039656 + (TTG)n Simple_repeat Simple_repeat 3 39 0 7 1054 11601 150 13 16 chr3 61560127 61561920 -98037863 - Lx5 LINE L1 -2035 3842 2062 6 1054 359 338 0 0 chr3 61561919 61562061 -98037722 + L1_Rod LINE L1 2376 2517 -3330 6 1054 480 245 45 0 chr3 61562101 61562256 -98037527 - L1_Mur2 LINE L1 -3180 2697 2536 7 1054 24 0 0 0 chr3 61562311 61562335 -98037448 + AT_rich Low_complexity Low_complexity 1 24 0 7 1054 608 285 100 35 chr3 61562346 61563068 -98036715 + L1_Mur3 LINE L1 2838 3644 -2502 7 1054 24 53 0 0 chr3 61563100 61563138 -98036645 + AT_rich Low_complexity Low_complexity 1 38 0 7 1054 1248 208 99 18 chr3 61563488 61563772 -98036011 - ORR1B2 LTR MaLR -6 361 55 7 1054 7604 33 21 3 chr3 61563772 61564694 -98035089 - L1Md_F3 LINE L1 -2 6582 5645 7 1054 1997 38 0 0 chr3 61564694 61564930 -98034853 + L1Md_F3 LINE L1 5360 5595 -288 7 1054 487 165 62 0 chr3 61564930 61565027 -98034756 - ORR1B2 LTR MaLR -263 104 2 7 1054 305 225 52 126 chr3 61565792 61565950 -98033833 - MLT1A1 LTR MaLR -221 144 1 7 1054 197 372 44 0 chr3 61566467 61566580 -98033203 + L3 LINE CR1 4062 4179 -310 7 1054 1144 254 58 33 chr3 61567019 61567711 -98032072 + L1_Mur3 LINE L1 897 1594 -4283 7 1054 8582 195 84 104 chr3 61567722 61567928 -98031855 + L1_Mur3 LINE L1 1853 2064 -3816 7 1054 534 109 0 0 chr3 61567928 61568020 -98031763 + (CA)n Simple_repeat Simple_repeat 1 92 0 8 1054 8582 195 84 104 chr3 61568020 61570607 -98029176 + L1_Mur3 LINE L1 2065 4591 -1289 7 1054 433 252 188 8 chr3 61570609 61570737 -98029046 + Lx5 LINE L1 6197 6347 -703 8 1054 963 316 94 44 chr3 61570782 61571166 -98028617 + Lx5 LINE L1 6518 6920 -130 8 1054 362 286 51 0 chr3 61571172 61571310 -98028473 - Lx9 LINE L1 -486 7158 7071 8 1054 2685 160 129 50 chr3 61571431 61571997 -98027786 + RMER19C LTR ERVK 1 611 0 8 1054 552 103 11 11 chr3 61571997 61572085 -98027698 + URR1B DNA MER1_type 132 219 -6 8 1054 1016 343 33 2 chr3 61572085 61572480 -98027303 - Lx9 LINE L1 -717 6927 6521 8 1054 1379 77 6 0 chr3 61576454 61576636 -98023147 - B2_Mm1a SINE B2 -9 184 2 8 1054 464 320 7 52 chr3 61577052 61577207 -98022576 + B3A SINE B2 1 148 -50 8 1054 207 125 0 0 chr3 61577207 61577247 -98022536 + (CA)n Simple_repeat Simple_repeat 1 40 0 8 1054 557 256 40 0 chr3 61577309 61577434 -98022349 - RMER1B Other Other -936 130 1 8 1054 36294 23 11 9 chr3 61577860 61582871 -98016912 + L1Md_A LINE L1 587 5586 -297 9 1054 8341 37 1 0 chr3 61582871 61583864 -98015919 + L1Md_A LINE L1 5587 6580 -2 9 1054 486 354 12 12 chr3 61584014 61584177 -98015606 - B3 SINE B2 -28 188 26 9 1054 517 250 33 8 chr3 61584182 61584303 -98015480 + Lx9 LINE L1 7284 7407 -237 9 1054 3355 68 14 0 chr3 61586045 61586484 -98013299 - L1_Mus3 LINE L1 -7 6631 6187 9 1054 3753 70 2 0 chr3 61586486 61587037 -98012746 + L1_Mus3 LINE L1 5519 6069 -569 9 1054 1145 55 14 0 chr3 61587886 61588031 -98011752 - B1_Mus2 SINE Alu 0 147 1 9 1054 23 33 0 0 chr3 61588502 61588532 -98011251 + AT_rich Low_complexity Low_complexity 1 30 0 9 1054 929 98 0 7 chr3 61588537 61588681 -98011102 + (TA)n Simple_repeat Simple_repeat 2 144 0 9 1054 572 277 30 94 chr3 61588730 61589029 -98010754 - B4A SINE B4 -11 281 2 9 1054 341 117 17 0 chr3 61590989 61591049 -98008734 + (TCTCCC)n Simple_repeat Simple_repeat 6 66 0 9 1054 209 186 0 0 chr3 61591050 61591072 -98008711 + (TA)n Simple_repeat Simple_repeat 1 22 0 9 1054 468 51 0 0 chr3 61591072 61591131 -98008652 + (TG)n Simple_repeat Simple_repeat 2 60 0 1 1054 209 186 0 0 chr3 61591131 61591151 -98008632 + (TA)n Simple_repeat Simple_repeat 1 20 0 1 1054 421 384 28 42 chr3 61592585 61592797 -98006986 + B4A SINE B4 12 220 -72 1 1054 1028 242 31 83 chr3 61592804 61593155 -98006628 + Lx7 LINE L1 7161 7493 -203 1 1054 3874 38 6 2 chr3 61593694 61594167 -98005616 - L1Md_F2 LINE L1 0 6582 6108 1 1054 24 77 0 0 chr3 61594197 61594249 -98005534 + AT_rich Low_complexity Low_complexity 1 52 0 1 1054 438 36 0 0 chr3 61594666 61594722 -98005061 + (GA)n Simple_repeat Simple_repeat 1 56 0 1 1054 1207 95 6 18 chr3 61595767 61595778 -98004005 - B2_Mm2 SINE B2 -25 170 161 1 1054 195 42 0 0 chr3 61595778 61595802 -98003981 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 1 1054 1207 95 6 18 chr3 61595802 61595961 -98003822 - B2_Mm2 SINE B2 -35 160 2 1 1054 254 176 0 12 chr3 61596858 61596944 -98002839 + GA-rich Low_complexity Low_complexity 2 86 0 1 1054 336 278 20 10 chr3 61597711 61597809 -98001974 + PB1 SINE Alu 24 122 -5 1 1054 276 155 0 0 chr3 61597900 61597971 -98001812 + (CAGAGA)n Simple_repeat Simple_repeat 6 76 0 1 1054 1131 95 0 0 chr3 61599153 61599301 -98000482 + B1_Mus1 SINE Alu 1 148 0 1 1054 744 115 0 0 chr3 61599301 61599414 -98000369 + (GGAA)n Simple_repeat Simple_repeat 4 116 0 1 1054 352 192 27 0 chr3 61599513 61599586 -98000197 - L1_Rod LINE L1 -97 5750 5676 1 1054 3198 207 122 14 chr3 61599592 61600370 -97999413 + RLTR25B LTR ERVK 1 862 -166 1 1054 1011 161 0 0 chr3 61600819 61600999 -97998784 + A-rich Low_complexity Low_complexity 1 180 0 1 1054 839 211 94 38 chr3 61601026 61601238 -97998545 + RLTR25B LTR ERVK 880 1103 0 1 1054 247 224 0 0 chr3 61601245 61601294 -97998489 - L1_Rod LINE L1 -189 5658 5610 1 1054 2715 257 56 47 chr3 61601295 61601478 -97998305 - L1_Rod LINE L1 -210 5637 5463 1 1054 3012 68 13 8 chr3 61601478 61601876 -97997907 + MTB LTR MaLR 1 400 0 1 1054 2715 257 56 47 chr3 61601876 61602789 -97996994 - L1_Rod LINE L1 -385 5462 4531 1 1054 273 29 0 0 chr3 61602968 61603002 -97996781 + (CAAAAA)n Simple_repeat Simple_repeat 3 36 0 1 1054 240 360 12 112 chr3 61603023 61603264 -97996519 + Lx9 LINE L1 7252 7468 -176 1 131 2797 132 0 5 chr3 61603507 61603941 -97995842 - Lx3A LINE L1 0 6981 6550 1 1055 227 152 27 96 chr3 61605004 61605077 -97994706 + L1MEe LINE L1 1000 1067 -3787 1 1055 684 305 105 87 chr3 61605333 61605943 -97993840 + L1MA6 LINE L1 5417 6037 -263 1 1055 469 364 10 5 chr3 61605998 61606197 -97993586 + RMER30 DNA MER1_type 2 201 -1 1 1055 2638 160 53 20 chr3 61606303 61606814 -97992969 - RLTR12B LTR ERVK 0 528 1 1 1055 27 0 0 0 chr3 61606913 61606940 -97992843 + AT_rich Low_complexity Low_complexity 1 27 0 1 1055 839 37 9 0 chr3 61607232 61607340 -97992443 - B1_Mus1 SINE Alu -1 147 39 1 1055 290 308 0 0 chr3 61607598 61607676 -97992107 - BC1_Mm scRNA scRNA -61 91 14 1 1055 21 36 0 0 chr3 61610573 61610601 -97989182 + AT_rich Low_complexity Low_complexity 1 28 0 1 1055 270 0 0 0 chr3 61610807 61610837 -97988946 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 1 1055 322 273 0 13 chr3 61612157 61612235 -97987548 + B3A SINE B2 1 77 -121 1 1055 351 0 0 0 chr3 61612377 61612416 -97987367 + (TAAAA)n Simple_repeat Simple_repeat 2 40 0 1 1055 1471 219 100 13 chr3 61614398 61614787 -97984996 - RMER17B LTR ERVK 0 958 536 1 1055 1827 217 13 8 chr3 61615730 61616106 -97983677 - ORR1C1 LTR MaLR 0 378 1 1 1055 2738 209 32 10 chr3 61616115 61616699 -97983084 - ORR1C1-int LTR MaLR -7 1502 906 1 1055 1020 215 10 5 chr3 61616699 61616900 -97982883 - MERVL_2A-int LTR ERVL -1289 4472 4271 1 1055 1183 232 8 30 chr3 61616923 61617190 -97982593 + ORR1B1-int LTR MaLR 1 261 -1248 1 1055 1574 185 125 3 chr3 61617236 61617573 -97982210 - ORR1C1 LTR MaLR 0 378 1 1 1055 313 325 128 30 chr3 61618174 61618377 -97981406 + HAL1-3A_ME LINE L1 2284 2506 -352 1 1055 474 337 0 0 chr3 61618606 61618778 -97981005 + (TG)n Simple_repeat Simple_repeat 2 173 0 1 1055 1140 82 0 0 chr3 61621958 61622105 -97977678 - B1_Mus2 SINE Alu 0 147 1 1 1055 32 36 0 18 chr3 61622299 61622322 -97977461 + AT_rich Low_complexity Low_complexity 1 23 0 1 1055 1077 103 14 0 chr3 61622322 61622467 -97977316 - B1_Mus1 SINE Alu 0 148 2 1 1055 32 36 0 18 chr3 61622467 61622500 -97977283 + AT_rich Low_complexity Low_complexity 1 33 0 1 1055 238 142 50 66 chr3 61622539 61622660 -97977123 + (TATAA)n Simple_repeat Simple_repeat 2 120 0 1 1055 442 337 51 33 chr3 61622698 61622974 -97976809 - B4A SINE B4 -10 282 2 1 1055 209 351 13 13 chr3 61624006 61624084 -97975699 + MIRb SINE MIR 25 102 -166 1 1055 1029 267 136 3 chr3 61625333 61625641 -97974142 - ORR1E LTR MaLR -2 357 9 1 1055 268 355 32 16 chr3 61626392 61626518 -97973265 - MLT1F2 LTR MaLR -122 438 311 1 1055 552 89 0 0 chr3 61626857 61626936 -97972847 + (GAAA)n Simple_repeat Simple_repeat 2 80 0 1 1055 687 100 0 0 chr3 61627201 61627311 -97972472 + (CA)n Simple_repeat Simple_repeat 1 110 0 1 1055 242 343 161 42 chr3 61627523 61627876 -97971907 + MLT1A1 LTR MaLR 3 397 -11 1 1055 250 306 0 0 chr3 61627910 61627995 -97971788 + L1MC4a LINE L1 7711 7795 -87 1 1055 323 400 5 37 chr3 61628711 61628898 -97970885 + MLT1A LTR MaLR 177 357 -17 1 1055 662 197 91 7 chr3 61629089 61629232 -97970551 - BGLII_B LTR ERVK -2 439 285 1 1055 3524 33 28 5 chr3 61629376 61629802 -97969981 + RLTR10C LTR ERVK 1 436 0 1 1055 1447 56 0 0 chr3 61629802 61629980 -97969803 + RLTR10-int LTR ERVK 1 178 -7403 1 1055 297 184 0 54 chr3 61630071 61630163 -97969620 + A-rich Low_complexity Low_complexity 3 89 0 1 1055 370 115 0 0 chr3 61630163 61630215 -97969568 + RLTR10-int LTR ERVK 93 144 -6398 1 1055 1956 9 9 4 chr3 61630213 61630444 -97969339 + RLTR10-int LTR ERVK 654 885 -1102 1 1055 19100 45 0 0 chr3 61630413 61632713 -97967070 + MMERVK10C-int LTR ERVK 3512 5810 -1771 1 1055 7471 51 0 51 chr3 61632699 61633685 -97966098 + MMERVK10C-int LTR ERVK 6646 7581 0 1 1055 3423 43 31 5 chr3 61633685 61634110 -97965673 + RLTR10C LTR ERVK 1 436 0 1 1055 214 133 0 0 chr3 61634439 61634469 -97965314 + (TG)n Simple_repeat Simple_repeat 1 30 0 1 1055 932 160 11 0 chr3 61634469 61634644 -97965139 + (TATATG)n Simple_repeat Simple_repeat 4 180 0 1 1055 372 143 0 0 chr3 61635707 61635763 -97964020 - MMETn-int LTR ERVK -3936 908 853 1 1055 15770 94 29 25 chr3 61635760 61638007 -97961776 + ETnERV2-int LTR ERVK 4183 6437 -969 1 1055 426 147 0 0 chr3 61638210 61638285 -97961498 + ETnERV2-int LTR ERVK 7331 7405 -1 1 1055 2485 137 8 10 chr3 61638298 61638697 -97961086 + RLTR9E LTR ERVK 6 403 -6 1 1055 2616 293 50 77 chr3 61638744 61640068 -97959715 - Lx8 LINE L1 -704 6769 5431 1 1055 213 39 0 0 chr3 61640068 61640094 -97959689 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1 1055 1256 268 48 121 chr3 61640094 61640434 -97959349 - Lx8 LINE L1 -417 5430 5127 1 1055 422 75 15 0 chr3 61641090 61641157 -97958626 + (TG)n Simple_repeat Simple_repeat 1 68 0 1 1055 698 78 10 0 chr3 61641626 61641728 -97958055 + (GGAA)n Simple_repeat Simple_repeat 2 104 0 1 1055 2385 133 3 23 chr3 61643236 61643621 -97956162 + Lx2 LINE L1 6605 6981 -16 1 1055 624 224 94 29 chr3 61643645 61643815 -97955968 + B3 SINE B2 28 208 -8 1 1055 24 32 0 0 chr3 61643825 61643856 -97955927 + AT_rich Low_complexity Low_complexity 1 31 0 1 1055 30 83 0 0 chr3 61644892 61644964 -97954819 + AT_rich Low_complexity Low_complexity 1 72 0 1 1055 410 168 42 42 chr3 61645028 61645264 -97954519 + (TA)n Simple_repeat Simple_repeat 1 236 0 1 1055 279 0 0 0 chr3 61647075 61647106 -97952677 + (T)n Simple_repeat Simple_repeat 1 31 0 1 1055 1657 154 15 0 chr3 61648632 61648898 -97950885 - L1_Mm LINE L1 -107 5776 5507 1 1055 6880 78 13 4 chr3 61648897 61649820 -97949963 + L1_Mus4 LINE L1 5704 6634 -2 1 1055 224 148 16 0 chr3 61649844 61649905 -97949878 + A-rich Low_complexity Low_complexity 2 63 0 1 1055 529 274 37 128 chr3 61651275 61651488 -97948295 + L1MA7 LINE L1 5519 5737 -554 1 1055 581 89 0 0 chr3 61651488 61651578 -97948205 - Lx LINE L1 -3 6651 6562 1 1055 514 274 36 129 chr3 61651578 61651624 -97948159 + L1MA7 LINE L1 5738 5774 -517 1 1055 263 28 0 27 chr3 61651624 61651661 -97948122 + (TAA)n Simple_repeat Simple_repeat 3 38 0 1 1055 514 243 49 43 chr3 61651661 61651882 -97947901 + L1MA7 LINE L1 5775 5964 -333 1 1055 333 252 178 0 chr3 61652522 61652657 -97947126 + L1MC LINE L1 4580 4738 -1408 1 1055 932 0 9 0 chr3 61652872 61652980 -97946803 + (GAAAA)n Simple_repeat Simple_repeat 5 113 0 1 1055 1373 292 43 0 chr3 61653006 61653376 -97946407 - MTD LTR MaLR -16 403 18 1 1055 342 338 40 37 chr3 61653584 61653907 -97945876 + L1M5 LINE L1 5286 5609 -835 1 1055 284 240 13 0 chr3 61653938 61654013 -97945770 + MER2 DNA MER2_type 85 160 -185 1 1055 612 127 70 0 chr3 61654034 61654176 -97945607 - RMER17B LTR ERVK -495 463 312 1 1055 409 335 62 12 chr3 61654178 61654338 -97945445 + MER2 DNA MER2_type 145 312 -33 1 1055 322 350 78 18 chr3 61654843 61655009 -97944774 + L1M5 LINE L1 5646 5821 -341 1 1055 2161 72 0 3 chr3 61655615 61655906 -97943877 + L1_Mus1 LINE L1 6278 6567 0 1 1055 1072 334 45 2 chr3 61656402 61656870 -97942913 + Lx8 LINE L1 6518 7005 -468 1 1055 37946 40 1 3 chr3 61656874 61663038 -97936745 - L1Md_T LINE L1 0 6585 338 1 1055 853 319 75 20 chr3 61663135 61663481 -97936302 + Lx8 LINE L1 7106 7470 -3 1 1055 239 333 98 49 chr3 61663831 61663995 -97935788 + FordPrefect DNA Tip100 1322 1493 -190 1 1055 614 306 134 79 chr3 61664370 61664839 -97934944 - MLT1D LTR MaLR -10 495 1 1 1055 280 253 78 69 chr3 61665656 61665758 -97934025 + MLT2B4 LTR ERVL 117 219 -337 1 1055 262 269 45 0 chr3 61665758 61665825 -97933958 + MLT2B4 LTR ERVL 358 427 -129 1 1055 1054 108 0 0 chr3 61668310 61668458 -97931325 + B1_Mus1 SINE Alu 1 148 0 1 1055 22 0 0 0 chr3 61669858 61669880 -97929903 + AT_rich Low_complexity Low_complexity 1 22 0 1 1055 189 0 0 0 chr3 61671947 61671968 -97927815 + (A)n Simple_repeat Simple_repeat 1 21 0 1 1055 628 210 40 8 chr3 61673562 61673687 -97926096 + B3 SINE B2 2 130 -86 1 1055 789 263 156 118 chr3 61673690 61674112 -97925671 + Lx9 LINE L1 6893 7335 -309 1 1055 423 0 0 0 chr3 61674112 61674159 -97925624 + (TC)n Simple_repeat Simple_repeat 2 48 0 1 1055 789 263 156 118 chr3 61674159 61674183 -97925600 + Lx9 LINE L1 7336 7336 -308 1 1055 239 0 32 0 chr3 61674183 61674214 -97925569 + (GA)n Simple_repeat Simple_repeat 1 32 0 1 1055 789 263 156 118 chr3 61674214 61674337 -97925446 + Lx9 LINE L1 7336 7499 -145 1 1055 591 53 0 0 chr3 61674337 61674412 -97925371 + (TA)n Simple_repeat Simple_repeat 2 76 0 1 1055 789 263 156 118 chr3 61674412 61674563 -97925220 + Lx9 LINE L1 7500 7642 -2 1 1055 953 292 76 18 chr3 61674785 61675113 -97924670 + ORR1E LTR MaLR 8 354 -5 1 1055 1400 180 32 121 chr3 61675285 61675632 -97924151 - RLTR25B LTR ERVK -712 316 1 1 1055 519 303 8 0 chr3 61675730 61675862 -97923921 - B1_Mur1 SINE Alu -6 143 11 1 1055 241 399 40 49 chr3 61676842 61677066 -97922717 + MLT2F LTR ERVL 274 495 -168 1 1055 5442 130 63 15 chr3 61677893 61678807 -97920976 - RMER17B LTR ERVK 0 958 1 2 1055 282 29 0 0 chr3 61678816 61678851 -97920932 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 2 1055 469 68 0 26 chr3 61678951 61679027 -97920756 + (TG)n Simple_repeat Simple_repeat 2 75 0 2 1055 845 206 6 19 chr3 61679491 61679649 -97920134 + B3 SINE B2 1 156 -60 2 1055 279 0 0 0 chr3 61680449 61680480 -97919303 + (TG)n Simple_repeat Simple_repeat 1 31 0 2 1055 481 330 146 17 chr3 61680485 61680725 -97919058 + Lx8 LINE L1 6202 6472 -1001 2 1055 28 29 0 0 chr3 61680877 61680912 -97918871 + AT_rich Low_complexity Low_complexity 1 35 0 2 1055 423 405 0 8 chr3 61680993 61681115 -97918668 + RSINE1 SINE B4 16 136 -29 2 1055 194 83 0 104 chr3 61681123 61681190 -97918593 + A-rich Low_complexity Low_complexity 1 60 0 2 1055 312 274 12 23 chr3 61681860 61681946 -97917837 + ID_B1 SINE B4 88 172 -52 2 1055 294 301 41 41 chr3 61681946 61681957 -97917826 + B1F1 SINE Alu 7 103 -46 2 1055 968 287 68 18 chr3 61682136 61682530 -97917253 - L1MD1 LINE L1 -314 5928 5515 2 1055 27 49 0 0 chr3 61682572 61682613 -97917170 + AT_rich Low_complexity Low_complexity 1 41 0 2 1055 625 321 130 12 chr3 61682639 61683225 -97916558 - L1MD1 LINE L1 -1174 4972 4318 2 1055 1958 232 52 12 chr3 61683511 61683544 -97916239 - MT2A LTR ERVL -12 521 488 2 1055 243 0 0 0 chr3 61683544 61683571 -97916212 + (CAGA)n Simple_repeat Simple_repeat 4 30 0 2 1055 1958 232 52 12 chr3 61683571 61684038 -97915745 - MT2A LTR ERVL -46 487 2 2 1055 1118 270 40 70 chr3 61684041 61684610 -97915173 - L1MD1 LINE L1 -2117 4029 3478 2 1055 6884 113 35 12 chr3 61684678 61684799 -97914984 - Lx LINE L1 -1 6653 6539 2 1055 548 77 11 0 chr3 61684799 61684890 -97914893 + (CA)n Simple_repeat Simple_repeat 2 93 0 2 1055 6884 115 34 12 chr3 61684890 61685862 -97913921 - Lx LINE L1 -116 6538 5536 2 1055 16340 176 21 8 chr3 61685858 61687565 -97912218 - Lx LINE L1 -1328 4555 2828 2 1055 392 37 19 0 chr3 61687565 61687619 -97912164 + (TG)n Simple_repeat Simple_repeat 2 56 0 2 1055 16340 166 19 6 chr3 61687619 61689832 -97909951 - Lx LINE L1 -3056 2827 583 2 1055 46 33 0 0 chr3 61690093 61690153 -97909630 + AT_rich Low_complexity Low_complexity 1 60 0 2 1055 21 71 0 0 chr3 61690726 61690768 -97909015 + AT_rich Low_complexity Low_complexity 1 42 0 2 1055 283 304 14 14 chr3 61690867 61690937 -97908846 + ID4 SINE ID 6 75 -8 2 1055 207 0 0 0 chr3 61690957 61690980 -97908803 + (TG)n Simple_repeat Simple_repeat 1 23 0 2 1055 13466 89 10 28 chr3 61691049 61692973 -97906810 + Lx3_Mus LINE L1 3932 5839 -47 2 1055 1051 65 0 21 chr3 61692973 61693115 -97906668 + B1_Mus1 SINE Alu 2 140 -8 2 1055 13466 145 7 21 chr3 61693115 61693204 -97906579 + Lx3_Mus LINE L1 5826 5903 -1570 2 1055 1334 61 0 11 chr3 61693209 61693391 -97906392 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 2 1055 2640 100 70 64 chr3 61693398 61693876 -97905907 - RLTR44C LTR ERVK -25 477 9 2 1055 6172 131 48 10 chr3 61693877 61694918 -97904865 + Lx3_Mus LINE L1 5924 7004 -5 2 1055 342 347 29 18 chr3 61694957 61695127 -97904656 - MER2 DNA MER2_type -81 264 93 2 1055 813 223 9 18 chr3 61695717 61695936 -97903847 + Lx4B LINE L1 6731 7035 -23 2 1055 258 32 0 0 chr3 61695937 61695968 -97903815 + (TTAA)n Simple_repeat Simple_repeat 4 34 0 2 1055 298 232 0 92 chr3 61696150 61696259 -97903524 - Lx7 LINE L1 -19 7677 7579 2 1055 1034 129 0 0 chr3 61696262 61696409 -97903374 - B1_Mm SINE Alu 0 147 1 2 1055 217 229 0 0 chr3 61696415 61696463 -97903320 + T-rich Low_complexity Low_complexity 1 48 0 2 1055 22733 72 2 13 chr3 61696465 61700246 -97899537 - L1Md_F2 LINE L1 -4 6578 2841 2 1055 1681 137 0 11 chr3 61700237 61700502 -97899281 - L1Md_F2 LINE L1 -6020 596 335 2 1055 527 237 29 103 chr3 61700496 61700769 -97899014 - Lx7 LINE L1 -88 7608 7356 2 1055 205 186 33 17 chr3 61700788 61700848 -97898935 + (TA)n Simple_repeat Simple_repeat 2 62 0 2 1055 461 212 131 0 chr3 61700865 61700964 -97898819 + Lx7 LINE L1 6487 6598 -1098 2 1055 266 194 53 15 chr3 61700964 61701095 -97898688 + (TA)n Simple_repeat Simple_repeat 2 137 0 2 1055 1048 237 137 12 chr3 61701149 61701756 -97898027 - Lx7 LINE L1 -352 7344 6619 2 1055 5940 202 40 61 chr3 61701779 61702151 -97897632 - L1_Mur3 LINE L1 -1995 3885 3499 2 1055 249 57 0 0 chr3 61702151 61702186 -97897597 + (TCTA)n Simple_repeat Simple_repeat 2 36 0 2 1055 5940 202 40 61 chr3 61702186 61702743 -97897040 - L1_Mur3 LINE L1 -2382 3498 2979 2 1055 3540 70 6 53 chr3 61702743 61703269 -97896514 - Lx3_Mus LINE L1 0 7009 6509 2 1055 5940 202 40 61 chr3 61703269 61703601 -97896182 - L1_Mur3 LINE L1 -2902 2978 2650 2 1055 1735 86 4 4 chr3 61703601 61703847 -97895936 - L1_Mus2 LINE L1 0 6566 6321 2 1055 5940 202 40 61 chr3 61703847 61704327 -97895456 - L1_Mur3 LINE L1 -3231 2649 2181 2 1055 480 226 0 9 chr3 61704343 61704459 -97895324 - RMER1B Other Other -13 1053 939 2 1055 4094 205 72 20 chr3 61704456 61704958 -97894825 - L1_Mur3 LINE L1 -6423 1305 805 2 1055 656 24 0 12 chr3 61704958 61705041 -97894742 + (GAAA)n Simple_repeat Simple_repeat 2 83 0 2 1055 4094 205 72 20 chr3 61705041 61705498 -97894285 - L1_Mur3 LINE L1 -6924 804 297 2 1055 261 412 88 10 chr3 61705511 61705584 -97894199 - Lx9 LINE L1 -57 7416 7336 2 1055 468 0 0 0 chr3 61705584 61705636 -97894147 + (CA)n Simple_repeat Simple_repeat 1 52 0 2 1055 694 335 63 34 chr3 61705636 61706081 -97893702 - Lx9 LINE L1 -297 7347 6876 2 1055 590 265 109 10 chr3 61706090 61706292 -97893491 + Lx9 LINE L1 5752 5973 -1671 2 1055 366 61 0 0 chr3 61706453 61706502 -97893281 + (CATA)n Simple_repeat Simple_repeat 3 51 0 2 1055 38830 34 2 6 chr3 61707129 61713274 -97886509 - L1Md_T LINE L1 0 6582 465 2 1055 231 36 0 0 chr3 61713368 61713396 -97886387 + (TA)n Simple_repeat Simple_repeat 1 28 0 2 1055 370 319 72 36 chr3 61713423 61713618 -97886165 - B3 SINE B2 -13 203 2 2 1055 7417 234 55 36 chr3 61713785 61716679 -97883104 + Lx6 LINE L1 4504 7454 -6 2 1055 973 174 30 155 chr3 61716730 61717098 -97882685 - RLTRETN_Mm LTR ERVK 0 322 1 2 1055 503 93 0 26 chr3 61717100 61717177 -97882606 - ETnERV2-int LTR ERVK -3 7403 7329 2 1055 657 206 113 47 chr3 61717177 61717520 -97882263 - RLTR13B1 LTR ERVK -365 537 118 2 1055 3611 107 15 0 chr3 61717520 61717997 -97881786 - MMETn-int LTR ERVK -236 7170 6687 2 1055 3602 123 22 5 chr3 61717993 61718572 -97881211 - MMETn-int LTR ERVK -3376 4030 3442 2 1055 1594 166 33 30 chr3 61718811 61719204 -97880579 - MMETn-int LTR ERVK -3958 3448 3122 2 1055 3673 167 24 117 chr3 61719232 61720214 -97879569 - MMETn-int LTR ERVK -3953 891 1 2 1055 1004 184 58 72 chr3 61720215 61720570 -97879213 - RLTRETN_Mm LTR ERVK 0 409 7 2 1055 186 133 0 0 chr3 61721181 61721211 -97878572 + (T)n Simple_repeat Simple_repeat 1 30 0 2 1055 773 153 0 6 chr3 61721634 61721792 -97877991 + (CA)n Simple_repeat Simple_repeat 2 158 0 2 1055 648 0 0 0 chr3 61721977 61722049 -97877734 + (GA)n Simple_repeat Simple_repeat 1 72 0 2 1055 4081 287 61 14 chr3 61722436 61723613 -97876170 - Lx6 LINE L1 -3 7457 6225 2 1055 26 30 0 0 chr3 61723803 61723836 -97875947 + AT_rich Low_complexity Low_complexity 1 33 0 2 1055 929 152 0 0 chr3 61723885 61724036 -97875747 + L1_Mur2 LINE L1 3670 3820 -2057 2 1055 1034 135 0 0 chr3 61724039 61724209 -97875574 + Lx2 LINE L1 6828 6997 0 2 1055 411 381 0 7 chr3 61724220 61724368 -97875415 + B3A SINE B2 2 148 -50 2 1055 384 40 0 0 chr3 61724368 61724418 -97875365 + (CA)n Simple_repeat Simple_repeat 1 50 0 2 1055 272 143 18 0 chr3 61724419 61724475 -97875308 + (TAGA)n Simple_repeat Simple_repeat 4 60 0 2 1055 1196 260 59 38 chr3 61725179 61725499 -97874284 + RMER1B Other Other 1 327 -739 2 1055 681 126 0 0 chr3 61725588 61725691 -97874092 - Lx2 LINE L1 -1045 5952 5850 2 1055 420 20 0 0 chr3 61725691 61725740 -97874043 + (CA)n Simple_repeat Simple_repeat 2 50 0 2 1055 2378 292 58 35 chr3 61725784 61726657 -97873126 + Lx9 LINE L1 6367 7259 -385 2 1055 720 251 23 50 chr3 61726782 61727000 -97872783 - B3 SINE B2 -1 215 4 2 1055 343 298 65 16 chr3 61727248 61727432 -97872351 - Charlie2b DNA MER1_type -606 2176 1984 2 1055 334 364 80 55 chr3 61727463 61727861 -97871922 + L2 LINE L2 2674 3081 -338 2 1055 183 42 0 0 chr3 61729470 61729494 -97870289 + (TG)n Simple_repeat Simple_repeat 2 25 0 2 1055 26 82 0 0 chr3 61730072 61730133 -97869650 + AT_rich Low_complexity Low_complexity 1 61 0 2 1055 441 314 164 21 chr3 61730388 61730577 -97869206 + B3 SINE B2 1 216 0 2 1055 21 57 0 0 chr3 61730586 61730621 -97869162 + AT_rich Low_complexity Low_complexity 1 35 0 2 1055 28 0 0 0 chr3 61731268 61731296 -97868487 + AT_rich Low_complexity Low_complexity 1 28 0 2 1055 445 300 90 34 chr3 61731628 61731949 -97867834 + ORR1E LTR MaLR 1 373 -6 2 1055 550 129 0 0 chr3 61732158 61732243 -97867540 + Lx3C LINE L1 6568 6652 -324 2 1055 3271 116 44 4 chr3 61732369 61732890 -97866893 + Lx2A1 LINE L1 6459 7000 -8 2 1055 1225 112 27 0 chr3 61733644 61733832 -97865951 + B2_Mm2 SINE B2 1 193 -2 2 1055 2119 86 201 0 chr3 61734317 61734691 -97865092 + RLTR47_MM LTR ERV1 1 449 -83 2 1055 775 135 0 21 chr3 61734693 61734837 -97864946 + GA-rich Low_complexity Low_complexity 2 142 0 2 1056 242 246 61 15 chr3 61735031 61735097 -97864686 - LTR84b LTR ERVL -366 395 327 2 1056 1114 68 0 20 chr3 61736303 61736453 -97863330 - B1_Mus1 SINE Alu 0 148 2 2 1056 180 0 0 0 chr3 61736948 61736968 -97862815 + (CA)n Simple_repeat Simple_repeat 2 21 0 2 1056 243 23 68 0 chr3 61737336 61737380 -97862403 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 2 1056 1122 88 0 0 chr3 61737385 61737532 -97862251 - B1_Mus2 SINE Alu 0 147 1 2 1056 240 35 0 0 chr3 61737660 61737689 -97862094 + (GA)n Simple_repeat Simple_repeat 1 29 0 2 1056 21 0 0 0 chr3 61738677 61738698 -97861085 + AT_rich Low_complexity Low_complexity 1 21 0 2 1056 501 17 0 0 chr3 61739159 61739217 -97860566 + (CA)n Simple_repeat Simple_repeat 2 59 0 2 1056 2113 123 9 35 chr3 61739420 61739758 -97860025 - ORR1A4 LTR MaLR 0 329 1 2 1056 3399 32 0 0 chr3 61739886 61740288 -97859495 - L1Md_T LINE L1 0 6582 6181 2 1056 288 304 112 46 chr3 61740814 61740966 -97858817 + MLT1L LTR MaLR 423 584 -26 2 1056 391 229 94 0 chr3 61741628 61741724 -97858059 - ORR1E LTR MaLR -254 105 1 2 1056 2868 328 108 66 chr3 61741724 61741834 -97857949 - MTE-int LTR MaLR -53 1527 1411 2 1056 2174 85 3 7 chr3 61741834 61742142 -97857641 + Lx3_Mus LINE L1 6701 7007 -2 2 1056 2868 328 108 66 chr3 61742142 61743493 -97856290 - MTE-int LTR MaLR -170 1410 3 2 1056 25 51 0 0 chr3 61743936 61743975 -97855808 + AT_rich Low_complexity Low_complexity 1 39 0 2 1056 1872 106 51 44 chr3 61746947 61747263 -97852520 + ORR1A3 LTR MaLR 1 318 -8 2 1056 1192 111 22 6 chr3 61748699 61748881 -97850902 + B2_Mm2 SINE B2 1 185 -10 2 1056 34 42 0 0 chr3 61748972 61749020 -97850763 + AT_rich Low_complexity Low_complexity 1 48 0 2 1056 27 0 0 0 chr3 61749169 61749196 -97850587 + AT_rich Low_complexity Low_complexity 1 27 0 2 1056 273 261 53 60 chr3 61750052 61750203 -97849580 + RMER10A LTR ERVL 223 372 -70 3 1056 522 0 0 0 chr3 61750431 61750489 -97849294 + (TC)n Simple_repeat Simple_repeat 1 58 0 3 1056 930 296 22 53 chr3 61750958 61751372 -97848411 + MYSERV6-int LTR ERVK 8275 8675 -284 3 1056 293 205 108 0 chr3 61751602 61751685 -97848098 + RLTR19-int LTR ERVK 3190 3281 -2856 3 1056 859 219 104 135 chr3 61751661 61752247 -97847536 + RLTR19-int LTR ERVK 3457 4024 -2113 3 1056 875 274 28 0 chr3 61752789 61753001 -97846782 + MTE-int LTR MaLR 1361 1578 -2 3 1056 238 308 66 0 chr3 61753892 61753983 -97845800 - L1MEg LINE L1 -4663 1537 1441 3 1056 21 36 0 0 chr3 61753986 61754014 -97845769 + AT_rich Low_complexity Low_complexity 1 28 0 3 1056 2306 82 11 20 chr3 61754023 61754371 -97845412 - L1_Mus3 LINE L1 -2 6636 6292 3 1056 338 342 66 39 chr3 61754386 61754672 -97845111 - L1MEg LINE L1 -4760 1440 1147 3 1056 432 0 0 0 chr3 61754682 61754730 -97845053 + (CA)n Simple_repeat Simple_repeat 2 49 0 3 1056 593 346 48 62 chr3 61756965 61757319 -97842464 + MLT1B LTR MaLR 40 388 -2 3 1056 4946 39 3 0 chr3 61759768 61760359 -97839424 - L1Md_T LINE L1 0 6582 5990 3 1056 769 335 19 52 chr3 61760616 61760981 -97838802 - RodERV21-int LTR ERV1 -1883 3108 2756 3 1056 976 52 0 15 chr3 61762409 61762546 -97837237 - L1Md_F2 LINE L1 -12 6570 6436 3 1056 1492 50 0 0 chr3 61762546 61762725 -97837058 + L1Md_F2 LINE L1 6275 6453 -129 3 1056 2727 252 73 34 chr3 61762750 61763595 -97836188 - RodERV21-int LTR ERV1 -2735 2256 1379 3 1056 1549 154 26 19 chr3 61763835 61764099 -97835684 - Lx4A LINE L1 -428 6630 6365 3 1056 2592 173 25 0 chr3 61764104 61764544 -97835239 + Lx4A LINE L1 6607 7057 -1 3 1056 272 318 7 113 chr3 61766704 61766846 -97832937 + MER20 DNA MER1_type 3 129 -90 3 1056 256 395 9 52 chr3 61767168 61767283 -97832500 + PB1D10 SINE Alu 6 115 -2 3 1056 180 0 0 0 chr3 61769455 61769475 -97830308 + (CA)n Simple_repeat Simple_repeat 2 21 0 3 1056 22 0 0 0 chr3 61769639 61769661 -97830122 + AT_rich Low_complexity Low_complexity 1 22 0 3 1056 598 174 25 9 chr3 61769850 61769985 -97829798 - Lx7 LINE L1 -379 5800 5661 3 1056 336 305 135 30 chr3 61769955 61770185 -97829598 + Lx8 LINE L1 7203 7456 -17 3 1056 327 289 103 32 chr3 61770364 61770735 -97829048 - L1MDa LINE L1 -655 5978 5574 3 1056 2717 296 34 13 chr3 61770853 61771728 -97828055 - Lx8 LINE L1 -123 7350 6457 3 1056 195 69 0 0 chr3 61771731 61771760 -97828023 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 3 1056 259 197 141 0 chr3 61771783 61771854 -97827929 - L1MDa LINE L1 -3636 2901 2821 3 1056 1471 178 165 5 chr3 61771970 61772377 -97827406 + Lx9 LINE L1 7172 7643 -1 3 1056 700 327 149 40 chr3 61772416 61772865 -97826918 + MT2A LTR ERVL 36 533 0 3 1056 2146 222 7 5 chr3 61773067 61773479 -97826304 + MTC LTR MaLR 1 413 -8 3 1056 493 229 7 59 chr3 61773489 61773642 -97826141 - L1MDa LINE L1 -4334 2299 2155 3 1056 249 108 0 0 chr3 61773644 61773681 -97826102 + (T)n Simple_repeat Simple_repeat 1 37 0 3 1056 5282 250 60 48 chr3 61774065 61775834 -97823949 - Lx9 LINE L1 -5 7639 5849 3 1056 613 329 80 18 chr3 61775840 61776437 -97823346 - L1MDa LINE L1 -4614 2019 1386 3 1056 246 306 30 97 chr3 61776493 61776627 -97823156 - Lx5 LINE L1 -40 7010 6886 3 1056 1409 276 106 7 chr3 61776650 61777344 -97822439 - Lx6 LINE L1 -288 7172 6170 3 1056 395 246 106 53 chr3 61777379 61777568 -97822215 - L1MDa LINE L1 -5333 1300 1102 3 1056 33339 75 3 13 chr3 61777580 61783703 -97816080 - L1Md_F2 LINE L1 -2 6580 523 3 1056 318 252 60 45 chr3 61784088 61784221 -97815562 - L1MA5A LINE L1 -370 5927 5793 3 1056 5576 38 3 1 chr3 61784301 61784965 -97814818 - L1Md_F2 LINE L1 -2 6580 5916 3 1056 2007 260 50 28 chr3 61785016 61785656 -97814127 - Lx8 LINE L1 -132 7341 6688 3 1056 271 224 125 59 chr3 61785670 61785822 -97813961 - Lx8 LINE L1 -6268 1340 1179 3 1056 1129 258 89 18 chr3 61786099 61786490 -97813293 + MTD LTR MaLR 1 419 0 3 1056 619 364 42 37 chr3 61786983 61787337 -97812446 + MER74A LTR ERVL 1 356 -202 3 1056 21 0 0 0 chr3 61788195 61788216 -97811567 + AT_rich Low_complexity Low_complexity 1 21 0 3 1056 321 252 65 9 chr3 61788978 61789086 -97810697 + L1MCa LINE L1 1891 2004 -4504 3 1056 799 114 8 0 chr3 61789118 61789250 -97810533 - Lx3_Mus LINE L1 -453 6556 6424 3 1056 334 389 23 6 chr3 61789704 61789880 -97809903 + B3A SINE B2 3 181 -17 3 1056 2375 112 28 8 chr3 61790089 61790450 -97809333 - Lx3B LINE L1 -1 6972 6605 3 1056 973 93 0 0 chr3 61790753 61790893 -97808890 - L1_Mus4 LINE L1 -792 5844 5705 3 1056 6040 129 41 4 chr3 61790921 61792145 -97807638 + Lx LINE L1 5267 6519 -135 3 1056 210 37 0 0 chr3 61792145 61792172 -97807611 + (TGGG)n Simple_repeat Simple_repeat 2 28 0 3 1056 6040 126 55 1 chr3 61792172 61792259 -97807524 + Lx LINE L1 6520 6626 -28 3 1056 657 96 0 0 chr3 61792272 61792366 -97807417 + (GGGA)n Simple_repeat Simple_repeat 4 97 0 3 1056 6521 200 13 30 chr3 61792639 61794682 -97805101 - Lx5 LINE L1 -1 7049 5047 3 1056 533 287 98 12 chr3 61794904 61795158 -97804625 + Lx8 LINE L1 7198 7473 0 3 1056 1194 203 78 22 chr3 61796114 61796581 -97803202 - RLTR20B3 LTR ERVK -13 564 6 3 1056 858 70 147 0 chr3 61797115 61797244 -97802539 - B1_Mus1 SINE Alu 0 148 1 3 1056 6652 38 9 0 chr3 61797257 61798066 -97801717 - L1Md_F3 LINE L1 0 6584 5769 3 1056 2701 59 0 0 chr3 61798063 61798404 -97801379 + L1Md_F2 LINE L1 6234 6574 -8 3 1056 3909 63 2 9 chr3 61798404 61798934 -97800849 - L1_Mm LINE L1 -105 5778 5253 3 1056 7837 52 5 3 chr3 61798934 61799992 -97799791 + L1_Mm LINE L1 2936 3995 -1888 3 1056 25 31 0 0 chr3 61800731 61800763 -97799020 + AT_rich Low_complexity Low_complexity 1 32 0 3 1056 369 0 0 0 chr3 61800964 61801005 -97798778 + (TAAA)n Simple_repeat Simple_repeat 2 42 0 3 1056 2337 197 43 37 chr3 61801254 61801770 -97798013 - RLTR11A LTR ERVK 0 528 10 3 1056 324 348 41 41 chr3 61801829 61801976 -97797807 - MLT2F LTR ERVL -233 430 284 3 1056 2112 132 3 9 chr3 61802036 61802365 -97797418 - ORR1A2 LTR MaLR 0 327 1 3 1056 1584 237 38 16 chr3 61802372 61802737 -97797046 + Lx5 LINE L1 6624 6996 -54 3 1056 734 204 0 12 chr3 61802757 61802926 -97796857 + GA-rich Low_complexity Low_complexity 1 167 0 3 1056 1054 49 7 71 chr3 61803984 61804138 -97795645 - B1_Mus2 SINE Alu -2 145 2 3 1056 26 0 0 0 chr3 61804421 61804447 -97795336 + AT_rich Low_complexity Low_complexity 1 26 0 3 1056 24 0 0 0 chr3 61804775 61804799 -97794984 + AT_rich Low_complexity Low_complexity 1 24 0 3 1056 1154 50 0 0 chr3 61805091 61805231 -97794552 + B1_Mm SINE Alu 1 140 -7 3 1056 207 0 0 0 chr3 61805231 61805254 -97794529 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 3 1056 307 275 163 45 chr3 61805428 61805649 -97794134 + L1M2 LINE L1 2271 2517 -3626 3 1056 302 275 11 42 chr3 61805674 61805769 -97794014 - PB1D10 SINE Alu -9 108 17 3 1056 2877 200 45 35 chr3 61806423 61806943 -97792840 + RLTR18 LTR ERVK 1 522 -94 3 1056 2488 107 8 38 chr3 61806943 61807342 -97792441 - L1_Mus4 LINE L1 -2 6634 6248 3 1056 2877 200 45 35 chr3 61807342 61807427 -97792356 + RLTR18 LTR ERVK 523 612 -4 3 1056 1212 244 43 43 chr3 61808811 61808992 -97790791 + Lx8 LINE L1 7074 7256 -217 3 1056 3094 167 113 17 chr3 61808992 61809336 -97790447 + RMER6D LTR ERVK 2 368 -352 3 1056 327 49 0 0 chr3 61809336 61809377 -97790406 + (TG)n Simple_repeat Simple_repeat 1 41 0 3 1056 3094 167 113 17 chr3 61809377 61809688 -97790095 + RMER6D LTR ERVK 369 720 0 3 1056 1212 244 43 43 chr3 61809688 61809904 -97789879 + Lx8 LINE L1 7257 7471 -2 3 1056 1715 164 17 3 chr3 61810571 61810864 -97788919 - Lx4A LINE L1 -2 7056 6760 3 1056 2229 181 76 120 chr3 61811289 61811524 -97788259 + MTC-int LTR MaLR 26 258 -1000 3 1056 1195 55 0 0 chr3 61811524 61811669 -97788114 + B1_Mus1 SINE Alu 3 147 -1 3 1056 2229 181 76 120 chr3 61811669 61812074 -97787709 + MTC-int LTR MaLR 259 638 -620 3 1056 406 333 0 24 chr3 61812286 61812412 -97787371 + B4 SINE B4 158 280 -12 3 1056 324 0 0 0 chr3 61812433 61812469 -97787314 + (CA)n Simple_repeat Simple_repeat 2 37 0 3 1056 23 68 0 0 chr3 61812716 61812760 -97787023 + AT_rich Low_complexity Low_complexity 1 44 0 3 1056 26 30 0 0 chr3 61812787 61812820 -97786963 + AT_rich Low_complexity Low_complexity 1 33 0 3 1056 21 36 0 0 chr3 61813675 61813703 -97786080 + AT_rich Low_complexity Low_complexity 1 28 0 3 1056 213 39 0 0 chr3 61813881 61813907 -97785876 + (TC)n Simple_repeat Simple_repeat 2 27 0 3 1056 198 0 0 0 chr3 61813907 61813928 -97785855 + (TG)n Simple_repeat Simple_repeat 1 22 0 3 1056 225 0 0 0 chr3 61813928 61813953 -97785830 + (GA)n Simple_repeat Simple_repeat 2 26 0 3 1056 845 117 7 0 chr3 61813962 61814099 -97785684 + (GGAA)n Simple_repeat Simple_repeat 4 141 0 3 1056 502 310 41 0 chr3 61814114 61814259 -97785524 - RSINE1 SINE B4 -13 152 2 3 1056 508 269 43 92 chr3 61814832 61815016 -97784767 - B3A SINE B2 -4 194 20 3 1056 2169 135 3 12 chr3 61815195 61815525 -97784258 + ORR1A2 LTR MaLR 1 327 0 3 1056 1312 111 106 0 chr3 61815559 61815767 -97784016 - Lx2 LINE L1 -163 6834 6605 3 1056 732 140 28 7 chr3 61815767 61815911 -97783872 + Lx2 LINE L1 6850 6996 -1 3 1056 609 292 14 14 chr3 61815917 61816063 -97783720 - ID_B1 SINE B4 -9 215 70 3 1056 402 300 17 0 chr3 61816511 61816631 -97783152 - Lx8 LINE L1 -723 6750 6629 3 1056 437 250 78 10 chr3 61816639 61816794 -97782989 + Lx8 LINE L1 6421 6722 -922 3 1056 306 0 0 0 chr3 61816830 61816864 -97782919 + (CA)n Simple_repeat Simple_repeat 1 34 0 3 1056 1632 227 105 3 chr3 61817015 61817395 -97782388 - MTD LTR MaLR 0 419 1 3 1056 3559 113 45 22 chr3 61818294 61819000 -97780783 - L1Md_F LINE L1 -5318 1242 518 3 1056 2707 47 0 12 chr3 61819000 61819342 -97780441 + L1Md_F2 LINE L1 6243 6580 -2 3 1056 323 248 240 40 chr3 61819357 61819582 -97780201 + MLT1C LTR MaLR 204 505 0 3 1056 282 333 15 8 chr3 61821169 61821299 -97778484 + RLTR14-int LTR ERV1 3748 3878 -1439 3 1056 1184 91 107 39 chr3 61821840 61822046 -97777737 + RLTR23 LTR ERV1 1 220 -210 3 1056 254 154 0 0 chr3 61822062 61822101 -97777682 + RLTR23 LTR ERV1 392 430 0 3 1056 3836 124 35 14 chr3 61822439 61823063 -97776720 + Lx LINE L1 6015 6651 -3 3 1056 479 281 77 20 chr3 61823590 61823786 -97775997 + B3 SINE B2 5 211 -5 3 1056 21 36 0 0 chr3 61824036 61824064 -97775719 + AT_rich Low_complexity Low_complexity 1 28 0 4 1056 255 155 0 0 chr3 61824458 61824505 -97775278 + CT-rich Low_complexity Low_complexity 12 58 0 4 1056 294 95 0 0 chr3 61824505 61824547 -97775236 + (CA)n Simple_repeat Simple_repeat 2 43 0 4 1056 393 58 0 0 chr3 61824637 61824689 -97775094 + (CA)n Simple_repeat Simple_repeat 1 52 0 4 1056 3492 219 47 109 chr3 61824987 61826306 -97773477 - RMER1A Other Other -11 1019 1 4 1056 1098 293 41 99 chr3 61826300 61826874 -97772909 - RMER1B Other Other -556 510 46 4 1056 186 103 0 0 chr3 61827792 61827821 -97771962 + (CATATA)n Simple_repeat Simple_repeat 4 32 0 4 1056 252 217 169 8 chr3 61827824 61827954 -97771829 + Lx9 LINE L1 7477 7627 -17 4 1056 30 27 0 0 chr3 61827955 61827992 -97771791 + AT_rich Low_complexity Low_complexity 1 37 0 4 1056 579 319 87 86 chr3 61828033 61828388 -97771395 + L1MEf LINE L1 753 1127 -5073 4 1056 1179 117 0 0 chr3 61828388 61828568 -97771215 + (GAA)n Simple_repeat Simple_repeat 1 180 0 4 1056 579 319 87 86 chr3 61828568 61828888 -97770895 + L1MEf LINE L1 1128 1429 -4771 4 1056 314 311 113 13 chr3 61828926 61829076 -97770707 + L1MEf LINE L1 1546 1710 -4490 4 1056 1012 281 98 25 chr3 61829079 61829811 -97769972 + Lx9 LINE L1 5527 6345 -1128 4 1056 573 42 0 0 chr3 61829811 61829883 -97769900 + (TG)n Simple_repeat Simple_repeat 1 72 0 4 1056 759 22 0 0 chr3 61829883 61829971 -97769812 + (GA)n Simple_repeat Simple_repeat 1 89 0 4 1056 21 36 0 0 chr3 61830041 61830069 -97769714 + AT_rich Low_complexity Low_complexity 1 28 0 4 1056 4126 37 0 0 chr3 61830569 61831052 -97768731 + L1Md_T LINE L1 6100 6582 0 4 1056 1350 285 40 7 chr3 61831140 61831684 -97768099 + L1_Mur3 LINE L1 5300 5861 -19 4 1056 202 97 0 31 chr3 61831930 61831962 -97767821 + (CA)n Simple_repeat Simple_repeat 2 32 0 4 1056 2159 43 57 0 chr3 61832287 61832567 -97767216 + L1Md_F3 LINE L1 6289 6584 0 4 1056 2201 208 30 49 chr3 61833350 61834159 -97765624 + RMER6A LTR ERVK 1 752 -4 4 1056 259 357 20 20 chr3 61835479 61835579 -97764204 + MIRb SINE MIR 67 166 -102 4 1056 37632 28 14 21 chr3 61836108 61837759 -97762024 - L1Md_T LINE L1 -1 6581 4929 4 1056 236 167 46 77 chr3 61837759 61837824 -97761959 + RMER20A LTR ERVK 186 248 -268 4 1056 37632 28 14 21 chr3 61837824 61842510 -97757273 - L1Md_T LINE L1 -1 4928 233 4 1056 383 280 57 64 chr3 61842926 61843067 -97756716 + B1F2 SINE Alu 1 140 -9 4 1056 232 185 54 36 chr3 61844002 61844058 -97755725 + MER77 LTR ERVL 78 134 -473 4 1056 468 0 0 0 chr3 61845074 61845126 -97754657 + (GA)n Simple_repeat Simple_repeat 2 53 0 4 1056 1927 63 4 4 chr3 61845211 61845467 -97754316 - L1_Mus2 LINE L1 0 6566 6311 4 1056 228 135 0 0 chr3 61846270 61846307 -97753476 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 4 1056 233 391 12 25 chr3 61846315 61846475 -97753308 - RSINE1 SINE B4 -3 162 5 4 1056 227 281 48 12 chr3 61847098 61847181 -97752602 - ORR1E LTR MaLR -14 365 280 4 1056 392 288 76 31 chr3 61847263 61847434 -97752349 - ORR1E LTR MaLR -192 178 4 4 1056 344 340 27 139 chr3 61847578 61847872 -97751911 + MLT1A0 LTR MaLR 30 290 -75 4 1056 182 345 53 86 chr3 61848434 61848586 -97751197 - L4 LINE RTE -276 1753 1607 4 1056 387 0 0 0 chr3 61849250 61849293 -97750490 + (CA)n Simple_repeat Simple_repeat 1 43 0 4 1056 676 335 20 10 chr3 61850085 61850281 -97749502 - B3A SINE B2 0 198 1 4 1056 239 247 68 31 chr3 61850653 61850800 -97748983 - Tigger5 DNA MER2_type 0 2406 2230 4 1056 265 250 13 0 chr3 61851152 61851228 -97748555 - Tigger5 DNA MER2_type -166 2240 2164 4 1056 195 360 0 39 chr3 61852936 61853040 -97746743 + L3 LINE CR1 3858 3957 -532 4 1056 1100 250 112 32 chr3 61853117 61853611 -97746172 + Lx7 LINE L1 5498 6077 -1619 4 1056 2642 234 131 6 chr3 61853678 61854380 -97745403 + Lx7 LINE L1 6597 7386 -310 4 1056 3335 246 43 53 chr3 61854416 61854968 -97744815 - RMER1C Other Other -1 1341 794 4 1056 2165 138 3 0 chr3 61854968 61855294 -97744489 + ORR1A2 LTR MaLR 1 327 0 4 1056 3335 246 43 53 chr3 61855294 61855623 -97744160 - RMER1C Other Other -549 793 469 4 1056 430 240 68 34 chr3 61855692 61855869 -97743914 + Lx7 LINE L1 7514 7696 0 4 1056 195 162 0 0 chr3 61856543 61856580 -97743203 + (CA)n Simple_repeat Simple_repeat 2 38 0 4 1056 669 118 0 0 chr3 61857165 61857275 -97742508 + (TA)n Simple_repeat Simple_repeat 2 111 0 4 1056 1612 55 0 10 chr3 61857802 61858004 -97741779 - L1Md_F2 LINE L1 -200 6382 6183 4 1056 1481 72 10 5 chr3 61858004 61858213 -97741570 + L1Md_F2 LINE L1 6365 6574 -8 4 1056 276 211 0 0 chr3 61858507 61858578 -97741205 + CT-rich Low_complexity Low_complexity 3 73 0 4 1056 313 371 79 5 chr3 61859386 61859600 -97740183 - MIRb SINE MIR -8 260 31 4 1056 447 152 0 0 chr3 61860255 61860334 -97739449 + (CA)n Simple_repeat Simple_repeat 1 79 0 4 1056 1434 319 84 29 chr3 61860334 61861069 -97738714 - Lx9 LINE L1 -341 7303 6528 4 1056 947 266 88 63 chr3 61861083 61861640 -97738143 - L1_Rod LINE L1 -1239 4608 4038 4 1056 1001 284 65 44 chr3 61861668 61861769 -97738014 - L1_Rod LINE L1 -2283 3564 3466 4 1056 923 94 0 25 chr3 61861769 61861932 -97737851 - L1_Mus4 LINE L1 0 6636 6478 4 1056 1001 284 65 44 chr3 61861932 61862512 -97737271 - L1_Rod LINE L1 -2382 3465 2870 4 1056 375 202 0 0 chr3 61862526 61862605 -97737178 + (TA)n Simple_repeat Simple_repeat 1 79 0 4 1056 2803 128 0 5 chr3 61862626 61863042 -97736741 - Lx3B LINE L1 -98 6875 6462 4 1056 3970 181 1 4 chr3 61863029 61863760 -97736023 - L1_Mm LINE L1 -240 5643 4915 4 1056 6491 106 33 7 chr3 61863752 61864710 -97735073 + Lx LINE L1 5672 6654 0 4 1056 864 138 36 0 chr3 61864728 61864866 -97734917 - Lx3B LINE L1 -490 6483 6341 4 1056 1027 267 68 24 chr3 61864909 61865358 -97734425 - L1_Rod LINE L1 -4176 1704 1247 4 1056 37 52 0 0 chr3 61865361 61865419 -97734364 + AT_rich Low_complexity Low_complexity 1 58 0 4 1056 412 278 40 34 chr3 61865456 61865605 -97734178 - Lx6 LINE L1 -26 7434 7285 4 1056 331 264 45 9 chr3 61865615 61865726 -97734057 - Lx5 LINE L1 -430 6620 6506 4 16 711 272 88 14 chr3 61865724 61866078 -97733705 - L1_Rod LINE L1 -6283 889 510 4 1057 760 214 112 12 chr3 61866736 61866906 -97732877 + RMER21B LTR ERV1 1 187 -655 4 1057 252 274 126 24 chr3 61867048 61867175 -97732608 + RMER21B LTR ERV1 426 565 -277 4 1057 772 319 113 62 chr3 61867489 61867957 -97731826 + MLT1D LTR MaLR 5 496 -9 4 1057 2982 198 5 9 chr3 61868169 61868746 -97731037 - RMER15 LTR ERVL 0 575 1 4 1057 195 125 0 0 chr3 61868767 61868807 -97730976 + (TTTTTG)n Simple_repeat Simple_repeat 4 43 0 4 1057 1054 84 0 14 chr3 61868808 61868952 -97730831 - B1_Mus1 SINE Alu -1 147 6 4 1057 375 253 0 11 chr3 61869868 61869956 -97729827 - ID_B1 SINE B4 -1 223 137 4 1057 267 31 0 0 chr3 61869958 61869990 -97729793 + (T)n Simple_repeat Simple_repeat 1 32 0 4 1057 1787 60 0 33 chr3 61870001 61870244 -97729539 - L1Md_F2 LINE L1 -7 6575 6341 4 1057 3726 42 0 0 chr3 61870244 61870691 -97729092 + L1Md_F2 LINE L1 5897 6343 -239 4 1057 414 132 0 0 chr3 61871904 61871972 -97727811 - L1_Mur1 LINE L1 -845 5041 4974 4 1057 782 176 11 76 chr3 61871977 61872162 -97727621 + L1_Mus3 LINE L1 6445 6617 -21 4 1057 540 0 0 0 chr3 61872166 61872226 -97727557 + (TAGA)n Simple_repeat Simple_repeat 1 60 0 4 1057 1691 127 119 10 chr3 61872731 61873042 -97726741 - IAPLTR4 LTR ERVK 0 345 1 4 1057 881 268 148 9 chr3 61873818 61874149 -97725634 - MTEb LTR MaLR 0 379 3 4 1057 25 0 0 0 chr3 61874207 61874232 -97725551 + AT_rich Low_complexity Low_complexity 1 25 0 4 1057 24 0 0 0 chr3 61874313 61874337 -97725446 + AT_rich Low_complexity Low_complexity 1 24 0 4 1057 902 241 112 98 chr3 61874460 61874879 -97724904 - RLTR28B LTR ERVL -55 426 2 4 1057 237 306 25 100 chr3 61874879 61874942 -97724841 + MLT1J-int LTR MaLR 979 1032 -355 4 1057 602 197 0 7 chr3 61874956 61875094 -97724689 + (TA)n Simple_repeat Simple_repeat 1 137 0 4 1057 402 310 57 58 chr3 61875503 61875664 -97724119 + ID_B1 SINE B4 84 246 -46 4 1057 254 226 0 0 chr3 61875664 61875717 -97724066 + GA-rich Low_complexity Low_complexity 1 53 0 4 1057 180 222 161 32 chr3 61875909 61876002 -97723781 - MIR SINE MIR -77 185 81 4 1057 1218 216 177 89 chr3 61876703 61877183 -97722600 + RLTR11A LTR ERVK 7 528 0 4 1057 215 182 54 18 chr3 61877206 61877262 -97722521 + MER5B DNA MER1_type 1 58 -120 4 1057 1399 78 0 15 chr3 61877319 61877514 -97722269 - B2_Mm2 SINE B2 -3 192 1 4 1057 207 0 0 0 chr3 61878251 61878274 -97721509 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 4 1057 441 331 168 8 chr3 61879076 61879326 -97720457 + MTE-int LTR MaLR 833 1122 -458 4 1057 279 0 0 0 chr3 61879333 61879364 -97720419 + (TC)n Simple_repeat Simple_repeat 2 32 0 4 1057 441 0 0 0 chr3 61879364 61879412 -97720371 + (TG)n Simple_repeat Simple_repeat 2 50 0 4 1057 550 231 242 8 chr3 61879412 61879656 -97720127 + MTC-int LTR MaLR 955 1255 -3 4 1057 987 277 131 16 chr3 61879663 61880037 -97719746 + MTC LTR MaLR 5 421 0 4 1057 341 311 68 98 chr3 61880566 61880904 -97718879 + MLT1A LTR MaLR 32 359 -15 4 1057 5348 33 2 0 chr3 61880968 61881608 -97718175 + L1Md_F3 LINE L1 5943 6583 -1 4 1057 255 31 0 0 chr3 61882066 61882098 -97717685 + (TTG)n Simple_repeat Simple_repeat 2 33 0 4 1057 1203 254 24 24 chr3 61882170 61882509 -97717274 - Lx6 LINE L1 -26 7434 7096 4 1057 1904 196 73 3 chr3 61882515 61882964 -97716819 + Lx5 LINE L1 5450 5942 -1108 4 1057 426 249 115 2 chr3 61883336 61883512 -97716271 + L1MA6 LINE L1 5583 5776 -380 4 1057 231 254 96 9 chr3 61883504 61883619 -97716164 + L1MA6 LINE L1 6169 6293 -7 4 1057 7790 100 26 8 chr3 61883858 61885067 -97714716 - Lx3B LINE L1 -234 6739 5521 4 1057 3880 125 35 11 chr3 61885065 61885714 -97714069 + Lx3B LINE L1 4864 5528 -358 4 1057 1290 171 171 16 chr3 61885702 61886088 -97713695 - L1_Mur3 LINE L1 -2403 3477 3032 4 1057 5810 192 36 48 chr3 61886086 61887758 -97712025 - L1_Mur3 LINE L1 -3290 2590 947 4 1057 414 344 57 27 chr3 61887826 61888122 -97711661 - L1_Mur3 LINE L1 -7347 381 77 4 1057 667 291 163 20 chr3 61888551 61889336 -97710447 - L1MC3 LINE L1 0 7785 6889 4 1057 245 229 45 67 chr3 61890227 61890301 -97709482 + B2_Mm2 SINE B2 5 74 -121 4 1057 315 0 0 0 chr3 61890301 61890336 -97709447 + (TG)n Simple_repeat Simple_repeat 1 35 0 4 1057 245 229 45 67 chr3 61890336 61890350 -97709433 + B2_Mm2 SINE B2 75 90 -105 4 1057 24 0 0 0 chr3 61890588 61890612 -97709171 + AT_rich Low_complexity Low_complexity 1 24 0 4 1057 30 59 0 0 chr3 61890691 61890742 -97709041 + AT_rich Low_complexity Low_complexity 1 51 0 4 1057 495 0 0 0 chr3 61892356 61892411 -97707372 + (TG)n Simple_repeat Simple_repeat 2 56 0 4 1057 253 316 0 37 chr3 61892439 61892521 -97707262 - PB1D10 SINE Alu -34 83 5 4 1057 39 17 0 33 chr3 61893054 61893098 -97706685 + AT_rich Low_complexity Low_complexity 1 44 0 5 1057 918 62 0 0 chr3 61893098 61893228 -97706555 + L1Md_T LINE L1 6449 6578 -4 5 1057 39 17 0 33 chr3 61893228 61893244 -97706539 + AT_rich Low_complexity Low_complexity 1 15 0 5 1057 388 362 35 80 chr3 61893967 61894255 -97705528 + MER57E1 LTR ERV1 39 313 -59 5 1057 243 88 0 0 chr3 61894309 61894343 -97705440 + (GA)n Simple_repeat Simple_repeat 1 34 0 5 1057 1414 169 84 4 chr3 61894435 61894696 -97705087 - ORR1A1 LTR MaLR -64 282 1 5 1057 435 322 32 39 chr3 61894702 61894857 -97704926 - B4 SINE B4 -114 178 25 5 1057 315 0 0 0 chr3 61894965 61895000 -97704783 + (TTTA)n Simple_repeat Simple_repeat 4 38 0 5 1057 4877 60 18 3 chr3 61895602 61896232 -97703551 + L1Md_F2 LINE L1 5932 6570 -12 5 1057 591 151 21 14 chr3 61896783 61896924 -97702859 - Lx9 LINE L1 0 7644 7503 5 1057 414 0 0 0 chr3 61896926 61896972 -97702811 + (TG)n Simple_repeat Simple_repeat 2 47 0 5 1057 624 159 29 29 chr3 61896983 61897119 -97702664 + Lx9 LINE L1 7304 7439 -205 5 1057 27 0 0 0 chr3 61897703 61897730 -97702053 + AT_rich Low_complexity Low_complexity 1 27 0 5 1057 284 0 28 0 chr3 61897735 61897771 -97702012 + (TG)n Simple_repeat Simple_repeat 2 38 0 5 1057 272 286 0 0 chr3 61897813 61897869 -97701914 - B4A SINE B4 -196 96 41 5 1057 2112 137 15 59 chr3 61899370 61899759 -97700024 - Lx LINE L1 -7 6647 6276 5 1057 830 112 8 0 chr3 61899759 61899884 -97699899 + Lx LINE L1 6148 6273 -381 5 1057 2370 134 5 18 chr3 61900251 61900645 -97699138 + Lx3A LINE L1 6586 6974 -7 5 1057 897 124 0 0 chr3 61900687 61900848 -97698935 + (TC)n Simple_repeat Simple_repeat 1 161 0 5 1057 295 215 30 15 chr3 61900903 61900969 -97698814 + MLT1A1 LTR MaLR 305 371 -37 5 1057 351 154 0 0 chr3 61901717 61901782 -97698001 + T-rich Low_complexity Low_complexity 1 65 0 5 1057 1063 52 0 7 chr3 61901782 61901918 -97697865 - B1_Mus1 SINE Alu 0 148 14 5 1057 248 247 25 0 chr3 61903562 61903643 -97696140 - Lx7 LINE L1 -33 7663 7581 5 1057 291 114 0 0 chr3 61903645 61903689 -97696094 + (TTTC)n Simple_repeat Simple_repeat 2 45 0 5 1057 198 103 0 0 chr3 61903745 61903774 -97696009 + (A)n Simple_repeat Simple_repeat 1 29 0 5 1057 1282 20 0 0 chr3 61904538 61904684 -97695099 + B1_Mm SINE Alu 2 147 0 5 1057 198 0 0 0 chr3 61904684 61904706 -97695077 + (A)n Simple_repeat Simple_repeat 1 22 0 5 1057 703 251 99 0 chr3 61904938 61905109 -97694674 - B3 SINE B2 0 216 29 5 1057 564 317 79 31 chr3 61906148 61906376 -97693407 + MER89 LTR ERV1 297 535 -24 5 1057 427 289 28 21 chr3 61906577 61906722 -97693061 + B1_Mus2 SINE Alu 1 146 -1 5 1057 204 97 0 0 chr3 61906729 61906760 -97693023 + (GAAAA)n Simple_repeat Simple_repeat 2 32 0 5 1057 307 314 32 73 chr3 61907393 61907613 -97692170 + HAL1 LINE L1 1969 2179 -328 5 1057 185 320 96 39 chr3 61910440 61910544 -97689239 - L2c LINE L2 -307 3080 2971 5 1057 478 338 20 120 chr3 61911419 61911819 -97687964 - MLT2D LTR ERVL -54 360 1 5 1057 20168 50 251 4 chr3 61912059 61916239 -97683544 + L1Md_T LINE L1 283 5589 -297 5 1057 8256 44 0 0 chr3 61916239 61917235 -97682548 + L1Md_T LINE L1 5590 6585 0 5 1057 17147 23 1 1 chr3 61917254 61919368 -97680415 + L1Md_T LINE L1 3470 5585 -298 5 1057 8352 37 1 0 chr3 61919369 61920364 -97679419 + L1Md_T LINE L1 5587 6582 0 5 1057 17188 21 3 1 chr3 61920384 61922496 -97677287 + L1Md_T LINE L1 3470 5586 -297 5 1057 7975 58 0 0 chr3 61922496 61923492 -97676291 + L1Md_T LINE L1 5587 6582 0 5 1057 3709 9 0 0 chr3 61923505 61923945 -97675838 + L1Md_T LINE L1 5146 5585 -298 5 1057 8336 40 0 0 chr3 61923946 61924942 -97674841 + L1Md_T LINE L1 5587 6582 0 5 1057 9481 29 1 0 chr3 61924961 61926153 -97673630 + L1Md_T LINE L1 3470 4662 -1221 5 1057 33710 37 0 0 chr3 61926155 61931388 -97668395 + L1Md_T LINE L1 260 5589 -297 5 1057 8874 13 0 0 chr3 61931388 61932384 -97667399 + L1Md_T LINE L1 5590 6585 0 5 1057 7798 14 0 1 chr3 61932385 61933316 -97666467 + L1Md_T LINE L1 4657 5586 -297 5 1057 8379 36 1 0 chr3 61933316 61934311 -97665472 + L1Md_T LINE L1 5587 6582 0 5 1057 17182 22 3 1 chr3 61934331 61936443 -97663340 + L1Md_T LINE L1 3470 5586 -297 5 1057 8267 38 4 0 chr3 61936443 61937435 -97662348 + L1Md_T LINE L1 5587 6582 0 5 1057 257 246 182 76 chr3 61938580 61938712 -97661071 + LTR50 LTR ERVL 21 166 -629 5 1057 452 171 70 35 chr3 61938815 61938930 -97660853 - L1_Mm LINE L1 -980 4903 4785 5 1057 6856 114 19 2 chr3 61938928 61940659 -97659124 + L1_Mus4 LINE L1 4863 6628 -8 5 1057 21 0 0 0 chr3 61940659 61940680 -97659103 + AT_rich Low_complexity Low_complexity 1 21 0 5 1057 637 300 5 45 chr3 61940900 61941099 -97658684 + B3A SINE B2 6 196 -2 5 1057 385 96 53 40 chr3 61941266 61941342 -97658441 + ORR1A1 LTR MaLR 270 346 0 5 1057 222 248 8 33 chr3 61941343 61941464 -97658319 + GA-rich Low_complexity Low_complexity 4 121 0 5 1057 1157 81 0 4 chr3 61941949 61942222 -97657561 + (TTC)n Simple_repeat Simple_repeat 1 271 0 5 1057 334 216 10 40 chr3 61942457 61942558 -97657225 + (CAGAGA)n Simple_repeat Simple_repeat 5 102 0 5 1057 23 33 0 0 chr3 61943208 61943238 -97656545 + AT_rich Low_complexity Low_complexity 1 30 0 5 1057 3462 156 102 14 chr3 61944000 61944636 -97655147 - RLTR17 LTR ERVK 0 692 1 5 1057 6295 94 31 5 chr3 61944900 61945844 -97653939 + L1_Mus4 LINE L1 5657 6624 -12 5 1057 6832 124 74 80 chr3 61947810 61948514 -97651269 - Lx2A LINE L1 -1 7007 6271 5 1057 456 121 0 0 chr3 61948514 61948580 -97651203 + B1_Mus2 SINE Alu 44 109 -38 5 1057 480 77 0 0 chr3 61948580 61948645 -97651138 + (TA)n Simple_repeat Simple_repeat 1 65 0 5 1057 6832 132 59 57 chr3 61948645 61949599 -97650184 - Lx2A LINE L1 -738 6270 5287 5 1057 6848 113 104 4 chr3 61949587 61951287 -97648496 - L1Md_F2 LINE L1 0 6582 4670 5 1057 36377 44 2 6 chr3 61951321 61957484 -97642299 - L1Md_F2 LINE L1 -10 6572 440 5 1057 15724 172 28 12 chr3 61957483 61960867 -97638916 - Lx2A LINE L1 -1200 4686 1250 5 1057 444 37 0 0 chr3 61960891 61960945 -97638838 + (TA)n Simple_repeat Simple_repeat 1 54 0 5 1057 5589 43 1 0 chr3 61960946 61961620 -97638163 - L1Md_F2 LINE L1 -14 6568 5894 5 1057 2229 66 0 3 chr3 61961620 61961926 -97637857 + L1_Mm LINE L1 4643 4947 -936 5 1057 1826 153 39 3 chr3 61961926 61962235 -97637548 + RLTR46 LTR ERVK 1 320 0 5 1057 2370 140 7 23 chr3 61962973 61963412 -97636371 + LSU-rRNA_Hsa rRNA rRNA 254 685 -4350 5 1057 1242 196 214 25 chr3 61963422 61963829 -97635954 + MMERVK10C-int LTR ERVK 336 819 -4587 5 1057 282 241 0 0 chr3 61963834 61963892 -97635891 + MMERVK10C-int LTR ERVK 938 995 -5142 5 1057 3408 94 74 15 chr3 61963894 61964424 -97635359 + MMERVK10C-int LTR ERVK 1885 2445 -5136 5 1057 7765 83 19 0 chr3 61964445 61965531 -97634252 + MMERVK10C-int LTR ERVK 2813 3919 -3662 5 1057 15207 80 5 1 chr3 61965530 61967580 -97632203 + MMERVK10C-int LTR ERVK 4125 6183 -1398 5 1057 6084 122 9 11 chr3 61967576 61968911 -97630872 + MMERVK10C-int LTR ERVK 6322 7680 0 5 1057 2006 139 9 3 chr3 61968911 61969229 -97630554 + RLTR46 LTR ERVK 1 320 0 5 1057 7329 51 0 0 chr3 61969229 61970171 -97629612 + L1_Mm LINE L1 4942 5883 0 5 1057 1897 193 42 33 chr3 61970190 61970709 -97629074 - L1VL4 LINE L1 -5394 908 385 5 1057 560 86 9 71 chr3 61970901 61971014 -97628769 - L1_Mus3 LINE L1 -6 6632 6527 5 1057 25 0 0 0 chr3 61971495 61971520 -97628263 + AT_rich Low_complexity Low_complexity 1 25 0 5 1057 396 0 0 0 chr3 61972066 61972110 -97627673 + (TA)n Simple_repeat Simple_repeat 2 45 0 5 1057 272 293 11 34 chr3 61972492 61972605 -97627178 + GA-rich Low_complexity Low_complexity 1 110 0 5 1057 3288 36 18 0 chr3 61973315 61973704 -97626079 + MTA_Mm LTR MaLR 1 396 0 5 1057 457 269 68 104 chr3 61975821 61976099 -97623684 + B4A SINE B4 7 274 -18 5 1057 422 18 18 0 chr3 61976117 61976172 -97623611 + (TC)n Simple_repeat Simple_repeat 1 56 0 5 1057 1131 69 0 0 chr3 61976927 61977071 -97622712 + B1_Mus2 SINE Alu 2 145 -2 5 1057 404 319 41 7 chr3 61977286 61977431 -97622352 - ID_B1 SINE B4 -74 150 1 5 1057 2717 204 49 33 chr3 61977557 61978190 -97621593 - RMER1B Other Other 0 1066 424 5 1057 388 310 26 72 chr3 61978835 61979099 -97620684 - ORSL-2b DNA Tip100 -247 261 10 5 1057 244 258 82 0 chr3 61979452 61979549 -97620234 - Lx9 LINE L1 0 7644 7540 5 1057 1347 289 80 11 chr3 61979554 61980079 -97619704 - Lx6 LINE L1 0 7460 6511 5 1057 230 317 48 38 chr3 61980198 61980303 -97619480 + MIR SINE MIR 77 182 -80 5 1057 2755 204 5 55 chr3 61982198 61982851 -97616932 + Lx4B LINE L1 6439 7058 0 5 1057 5966 245 57 35 chr3 61982880 61983717 -97616066 + Lx8 LINE L1 3670 4540 -1340 5 1057 486 0 0 0 chr3 61983717 61983771 -97616012 + (TAGA)n Simple_repeat Simple_repeat 4 57 0 5 1057 5966 245 57 35 chr3 61983771 61984536 -97615247 + Lx8 LINE L1 4541 5301 -579 5 1057 868 215 67 10 chr3 61984536 61984729 -97615054 + B3 SINE B2 2 205 -11 5 1057 5966 245 57 35 chr3 61984729 61985013 -97614770 + Lx8 LINE L1 5302 5609 -271 5 1057 3381 23 8 2 chr3 61985013 61985407 -97614376 + MTA_Mm LTR MaLR 1 396 0 5 1057 5966 300 42 45 chr3 61985407 61986106 -97613677 + Lx8 LINE L1 5610 6298 -1175 5 1057 378 0 0 0 chr3 61986106 61986148 -97613635 + (TTTTG)n Simple_repeat Simple_repeat 2 43 0 5 1057 2527 327 35 50 chr3 61986148 61987090 -97612693 + Lx8 LINE L1 6299 7232 -241 5 1057 266 132 19 0 chr3 61987128 61987181 -97612602 + (TGG)n Simple_repeat Simple_repeat 1 54 0 5 1057 243 293 39 54 chr3 61987491 61987621 -97612162 + MIR SINE MIR 83 210 -52 5 1057 345 24 0 0 chr3 61987684 61987726 -97612057 + (TATG)n Simple_repeat Simple_repeat 2 43 0 5 1057 783 234 46 32 chr3 61987732 61987948 -97611835 - RMER5 LTR ERV1 -10 524 306 5 1057 494 226 19 9 chr3 61988116 61988223 -97611560 - PB1D10 SINE Alu -1 116 9 5 1057 261 322 0 0 chr3 61988170 61988229 -97611554 - B4A SINE B4 -146 146 88 5 1057 212 253 49 37 chr3 61988284 61988366 -97611417 - BC1_Mm scRNA scRNA -64 88 6 5 1057 840 200 0 7 chr3 61988611 61988762 -97611021 - B1_Mur4 SINE Alu 0 150 1 5 1057 295 305 42 0 chr3 61989171 61989266 -97610517 - MIR SINE MIR -78 184 86 5 1057 332 164 63 9 chr3 61989752 61989863 -97609920 + (TA)n Simple_repeat Simple_repeat 2 118 0 5 1057 838 147 133 0 chr3 61990310 61990460 -97609323 + ORR1B1 LTR MaLR 225 394 0 5 1057 1105 176 63 27 chr3 61990460 61990682 -97609101 + ORR1B1-int LTR MaLR 1 230 -1733 5 1057 4222 138 66 142 chr3 61990680 61991648 -97608135 + ORR1B1-int LTR MaLR 1050 1944 -19 5 1057 19043 22 1 0 chr3 61992382 61995386 -97604397 - L1Md_T LINE L1 -2 6580 3575 5 1057 1027 105 0 12 chr3 61995967 61996140 -97603643 - Lx LINE L1 -5 6649 6479 5 1058 263 316 92 50 chr3 61998232 61998569 -97601214 - Lx9 LINE L1 -174 7470 7120 5 1058 180 365 0 0 chr3 61999948 62000000 -97599783 + MIRc SINE MIR 92 143 -125 5 1058 460 286 43 48 chr3 62000592 62000779 -97599004 + MER20 DNA MER1_type 34 219 0 1 1058 1678 203 6 0 chr3 62001842 62002191 -97597592 - RCHARR1 DNA MER1_type -54 920 570 2 1058 889 303 18 28 chr3 62002202 62002484 -97597299 - Lx9 LINE L1 -1008 6636 6358 3 1058 528 45 0 0 chr3 62002494 62002561 -97597222 + (TG)n Simple_repeat Simple_repeat 2 68 0 4 1058 373 180 33 22 chr3 62002735 62002826 -97596957 - RMER17D LTR ERVK 0 889 798 5 1058 338 174 0 35 chr3 62002889 62002949 -97596834 + polypurine Low_complexity Low_complexity 1 59 0 6 1058 1133 106 0 6 chr3 62002949 62003130 -97596653 + (GGGAA)n Simple_repeat Simple_repeat 1 180 0 7 1058 338 174 0 35 chr3 62003130 62003182 -97596601 + polypurine Low_complexity Low_complexity 60 109 0 8 1058 882 148 0 17 chr3 62003189 62003368 -97596415 + GA-rich Low_complexity Low_complexity 2 177 0 9 1058 684 181 12 6 chr3 62003392 62003559 -97596224 + GA-rich Low_complexity Low_complexity 3 170 0 9 1058 942 166 10 10 chr3 62003594 62003887 -97595896 + GA-rich Low_complexity Low_complexity 1 292 0 9 1058 332 326 88 27 chr3 62003887 62004035 -97595748 + HAL1-3A_ME LINE L1 2282 2438 -420 1 1058 745 203 8 13 chr3 62004040 62004661 -97595122 + GA-rich Low_complexity Low_complexity 1 617 0 1 1058 766 229 6 17 chr3 62004672 62005030 -97594753 + GA-rich Low_complexity Low_complexity 1 353 0 1 1058 572 197 6 22 chr3 62005105 62005287 -97594496 + GA-rich Low_complexity Low_complexity 1 179 0 1 1058 347 182 13 0 chr3 62005331 62005408 -97594375 + G-rich Low_complexity Low_complexity 4 81 0 1 1058 1050 279 52 146 chr3 62005409 62006160 -97593623 - MTD-int LTR MaLR -530 1433 1 1 1058 689 204 119 67 chr3 62006165 62006359 -97593424 - MTD LTR MaLR -5 414 211 1 1058 24 0 0 0 chr3 62006462 62006486 -97593297 + AT_rich Low_complexity Low_complexity 1 24 0 1 1058 521 30 0 15 chr3 62006862 62006930 -97592853 + (TTTC)n Simple_repeat Simple_repeat 2 68 0 1 1058 207 25 24 48 chr3 62007089 62007131 -97592652 + (GTGTG)n Simple_repeat Simple_repeat 5 45 0 1 1058 3180 53 3 0 chr3 62007134 62007514 -97592269 + IAPEY_LTR LTR ERVK 5 385 0 1 1058 387 0 0 0 chr3 62007514 62007557 -97592226 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 1058 291 364 15 52 chr3 62008001 62008137 -97591646 - MLT1B-int LTR MaLR -1236 151 21 2 1058 358 315 102 74 chr3 62008371 62008587 -97591196 - RMER2 LTR ERV1 -12 555 334 2 1058 252 227 0 0 chr3 62009243 62009331 -97590452 + (TG)n Simple_repeat Simple_repeat 1 88 0 2 1058 428 269 32 79 chr3 62009332 62009522 -97590261 - MLT1B LTR MaLR -168 222 42 2 1058 33819 35 1 0 chr3 62009835 62015676 -97584107 + L1Md_T LINE L1 1 5589 -297 2 1058 8977 8 0 0 chr3 62015676 62016672 -97583111 + L1Md_T LINE L1 5590 6585 0 2 1058 24 85 0 0 chr3 62016687 62016746 -97583037 + AT_rich Low_complexity Low_complexity 1 59 0 2 1058 632 74 11 0 chr3 62017040 62017135 -97582648 + (TCTA)n Simple_repeat Simple_repeat 3 98 0 2 1058 730 197 119 11 chr3 62017186 62017371 -97582412 - Lx7 LINE L1 -288 7408 7204 2 1058 4891 159 22 28 chr3 62017393 62018311 -97581472 + MERVL_2A-int LTR ERVL 3506 4417 -1344 2 1058 1033 215 32 8 chr3 62018354 62018775 -97581008 - MurERV4-int LTR ERVK -4705 555 1 2 1058 2334 179 104 28 chr3 62018775 62019304 -97580479 - RMER4B LTR ERVK 0 585 17 2 1058 606 180 33 0 chr3 62019307 62019444 -97580339 + Lx7 LINE L1 5631 5771 -796 2 1058 821 144 16 0 chr3 62019444 62019569 -97580214 + B1_Mur3 SINE Alu 15 141 -8 3 1058 483 248 0 85 chr3 62019569 62019585 -97580198 + ID_B1 SINE B4 96 224 0 3 1058 794 106 8 0 chr3 62019592 62019715 -97580068 + (GGAA)n Simple_repeat Simple_repeat 2 125 0 3 1058 349 173 0 133 chr3 62019727 62019840 -97579943 + Lx7 LINE L1 5797 5894 -1802 2 1058 944 288 96 58 chr3 62020702 62021254 -97578529 - Lx9 LINE L1 -97 7547 6975 3 1058 1587 330 44 35 chr3 62022086 62022970 -97576813 - Lx8 LINE L1 -117 7356 6465 3 1058 7311 97 15 3 chr3 62022977 62024615 -97575168 - L1_Mus3 LINE L1 0 6638 4978 3 1058 210 214 0 35 chr3 62024718 62024745 -97575038 + T-rich Low_complexity Low_complexity 32 58 0 3 1058 2305 169 32 5 chr3 62024745 62025155 -97574628 - MTC LTR MaLR 0 421 1 3 1058 210 214 0 35 chr3 62025155 62025185 -97574598 + T-rich Low_complexity Low_complexity 3 31 0 3 1058 476 72 0 0 chr3 62026107 62026176 -97573607 - L1Md_F2 LINE L1 -12 6570 6502 3 1058 388 301 160 46 chr3 62027552 62028027 -97571756 + MLT1E1 LTR MaLR 3 560 -94 4 1058 662 109 23 8 chr3 62028463 62028592 -97571191 + (GA)n Simple_repeat Simple_repeat 2 132 0 4 1058 318 269 0 15 chr3 62028677 62028745 -97571038 - MER63D DNA AcHobo -994 67 1 4 1058 207 0 0 0 chr3 62028894 62028917 -97570866 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 4 1058 213 225 0 0 chr3 62029190 62029230 -97570553 + (CATATA)n Simple_repeat Simple_repeat 2 41 0 4 1058 1722 228 57 59 chr3 62029416 62029887 -97569896 + RMER19C LTR ERVK 79 548 -63 4 1058 312 296 37 0 chr3 62030437 62030545 -97569238 + RMER15 LTR ERVL 421 532 -43 4 1058 219 69 0 0 chr3 62030814 62030843 -97568940 + (TTTA)n Simple_repeat Simple_repeat 1 29 0 4 1058 893 139 30 101 chr3 62030843 62030983 -97568800 - B2_Mm2 SINE B2 -34 161 29 4 1058 4260 70 0 13 chr3 62030983 62031532 -97568251 - L1_Mus1 LINE L1 0 6567 6026 4 1058 893 139 30 101 chr3 62031532 62031559 -97568224 - B2_Mm2 SINE B2 -167 28 6 4 1058 186 43 0 0 chr3 62031569 62031592 -97568191 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 5 1058 262 306 0 65 chr3 62031719 62031796 -97567987 + ID4_ SINE ID 1 72 -11 5 1058 381 22 0 0 chr3 62031796 62031842 -97567941 + (CA)n Simple_repeat Simple_repeat 2 47 0 5 1058 252 254 0 0 chr3 62032095 62032213 -97567570 + (TG)n Simple_repeat Simple_repeat 1 118 0 5 1058 272 326 5 5 chr3 62032279 62032509 -97567274 + (TG)n Simple_repeat Simple_repeat 1 230 0 5 1058 247 265 6 17 chr3 62032526 62032699 -97567084 + (TG)n Simple_repeat Simple_repeat 2 172 0 5 1058 2257 169 19 2 chr3 62032704 62033126 -97566657 - L1_Mm LINE L1 -715 5168 4740 5 1058 2007 143 0 3 chr3 62033125 62033454 -97566329 + L1_Mm LINE L1 5516 5843 -40 5 1058 29715 121 25 30 chr3 62033525 62035739 -97564044 + L1_Mus1 LINE L1 437 2624 -3259 5 1058 1049 64 36 0 chr3 62035739 62035879 -97563904 - B1_Mm SINE Alu 0 147 3 5 1058 29715 93 13 9 chr3 62035879 62039794 -97559989 + L1_Mus1 LINE L1 2625 6567 0 5 1058 4398 137 58 0 chr3 62039803 62040577 -97559206 + Lx2 LINE L1 5827 6645 -352 5 1058 1186 125 19 19 chr3 62040580 62040792 -97558991 + Lx2 LINE L1 6780 6991 -6 5 1058 224 363 147 7 chr3 62041330 62041466 -97558317 - MIR3 SINE MIR -21 187 33 6 1058 252 306 116 7 chr3 62041520 62041658 -97558125 + MER5B DNA MER1_type 4 156 -22 6 1058 266 306 98 16 chr3 62041525 62041648 -97558135 - MER5A DNA MER1_type -10 179 47 6 1058 180 0 0 0 chr3 62041991 62042011 -97557772 + (TA)n Simple_repeat Simple_repeat 2 21 0 6 1058 576 268 8 30 chr3 62042137 62042268 -97557515 + RSINE1 SINE B4 3 130 -35 6 1058 22 0 0 0 chr3 62042867 62042889 -97556894 + AT_rich Low_complexity Low_complexity 1 22 0 6 1058 29 28 0 0 chr3 62043112 62043148 -97556635 + AT_rich Low_complexity Low_complexity 1 36 0 6 1058 4328 113 6 3 chr3 62043470 62044182 -97555601 - MusHAL1 LINE L1 -632 2080 1367 6 1058 433 163 37 0 chr3 62044484 62044619 -97555164 + (TA)n Simple_repeat Simple_repeat 2 141 0 6 1058 1209 129 16 16 chr3 62045708 62045897 -97553886 - B2_Mm2 SINE B2 -6 189 1 6 1058 238 356 20 0 chr3 62045937 62046038 -97553745 + L1M5 LINE L1 4038 4140 -2006 7 1058 366 61 0 0 chr3 62046208 62046257 -97553526 + (CA)n Simple_repeat Simple_repeat 2 50 0 7 1058 301 294 0 97 chr3 62046759 62046872 -97552911 + L1M2 LINE L1 5133 5234 -909 7 1058 705 274 22 95 chr3 62047320 62047542 -97552241 - B3 SINE B2 -5 211 6 7 1058 1058 66 0 0 chr3 62047710 62047847 -97551936 - B2_Mm2 SINE B2 -58 137 1 7 1058 1394 280 36 17 chr3 62048046 62048461 -97551322 - MTD LTR MaLR 0 419 6 7 1058 378 0 0 0 chr3 62048762 62048804 -97550979 + (TTTA)n Simple_repeat Simple_repeat 3 44 0 7 1058 1130 77 0 0 chr3 62048807 62048950 -97550833 - B1_Mus1 SINE Alu -5 143 1 7 1058 356 276 248 27 chr3 62049024 62049173 -97550610 + RMER15 LTR ERVL 352 533 -42 7 1058 1090 256 19 97 chr3 62049559 62049970 -97549813 + MTE2a LTR MaLR 1 379 0 7 1058 253 240 78 20 chr3 62051012 62051114 -97548669 + MamGypLTR1b LTR Gypsy 3 110 -672 8 1058 298 181 60 13 chr3 62052541 62052692 -97547091 + (TA)n Simple_repeat Simple_repeat 2 159 0 8 1058 332 286 9 67 chr3 62053656 62053669 -97546114 + ID_B1 SINE B4 77 94 -130 8 1058 393 286 10 30 chr3 62053669 62053680 -97546103 + PB1D10 SINE Alu 5 13 -104 8 1058 983 283 99 6 chr3 62053680 62054025 -97545758 + MTE2b LTR MaLR 3 379 0 8 1058 332 286 9 67 chr3 62054025 62054105 -97545678 + ID_B1 SINE B4 95 175 -49 8 1058 4809 201 50 8 chr3 62054252 62055648 -97544135 - Lx3C LINE L1 -7 7002 5506 8 1058 4496 175 30 69 chr3 62055642 62055897 -97543886 + L1VL2 LINE L1 52 239 -6096 8 1058 285 29 0 0 chr3 62055897 62055931 -97543852 + (CA)n Simple_repeat Simple_repeat 1 34 0 8 1058 5330 122 34 33 chr3 62055931 62057448 -97542335 + L1VL2 LINE L1 240 1810 -1805 8 1058 225 0 0 0 chr3 62057448 62057473 -97542310 + (TC)n Simple_repeat Simple_repeat 2 26 0 8 1058 1191 103 29 0 chr3 62057475 62057650 -97542133 - B2_Mm2 SINE B2 -14 181 2 8 1058 1046 115 0 0 chr3 62057681 62057829 -97541954 - B2_Mm2 SINE B2 -47 148 1 9 1058 1079 116 0 0 chr3 62057829 62057993 -97541790 + L1VL2 LINE L1 1806 1969 -1646 8 1058 4608 111 36 3 chr3 62057993 62058688 -97541095 + Lx LINE L1 5937 6654 0 9 1058 2206 158 72 0 chr3 62058698 62059159 -97540624 - L1_Mur1 LINE L1 -2081 3805 3312 9 1058 453 66 0 0 chr3 62059335 62059396 -97540387 + (TG)n Simple_repeat Simple_repeat 2 62 0 9 1058 633 248 80 0 chr3 62059399 62059536 -97540247 - B3A SINE B2 -50 148 1 9 1058 234 310 127 66 chr3 62059967 62060133 -97539650 + MLT1G3 LTR MaLR 215 390 -205 9 1058 634 282 52 0 chr3 62060322 62060496 -97539287 - B3A SINE B2 -15 183 1 9 1058 27 49 0 0 chr3 62061283 62061324 -97538459 + AT_rich Low_complexity Low_complexity 1 41 0 9 1058 360 0 0 0 chr3 62061363 62061403 -97538380 + (CA)n Simple_repeat Simple_repeat 1 40 0 9 1058 5381 230 63 74 chr3 62061403 62063214 -97536569 + Lx6 LINE L1 17 1773 -4107 9 1058 2642 44 26 3 chr3 62063214 62063555 -97536228 - L1Md_F3 LINE L1 -2 6582 6234 1 1058 5381 179 26 22 chr3 62063555 62063851 -97535932 + Lx6 LINE L1 1774 2055 -3825 9 1058 381 22 0 0 chr3 62063851 62063897 -97535886 + (CA)n Simple_repeat Simple_repeat 2 47 0 1 1058 5381 179 26 22 chr3 62063897 62064307 -97535476 + Lx6 LINE L1 2056 2476 -3404 9 1058 2154 171 18 26 chr3 62064748 62064930 -97534853 + Lx6 LINE L1 2466 2646 -3234 9 1058 279 0 0 0 chr3 62064930 62064961 -97534822 + (CCA)n Simple_repeat Simple_repeat 2 32 0 1 1058 2154 171 18 26 chr3 62064961 62065270 -97534513 + Lx6 LINE L1 2647 2953 -2927 9 1058 340 158 0 34 chr3 62065271 62065330 -97534453 + polypurine Low_complexity Low_complexity 2 58 0 1 1058 1026 146 0 0 chr3 62065333 62065489 -97534294 + (GGA)n Simple_repeat Simple_repeat 3 158 0 1 1058 1308 79 0 0 chr3 62065489 62065667 -97534116 + (GAA)n Simple_repeat Simple_repeat 3 180 0 1 1058 1026 146 0 0 chr3 62065667 62065688 -97534095 + (GGA)n Simple_repeat Simple_repeat 3 23 0 1 1058 594 128 0 0 chr3 62065681 62065775 -97534008 + (GAAA)n Simple_repeat Simple_repeat 4 97 0 1 1058 7443 222 36 14 chr3 62065790 62067813 -97531970 + Lx6 LINE L1 5361 7433 -27 9 1058 1470 204 59 218 chr3 62069017 62069608 -97530175 + RMER19C LTR ERVK 1 497 -114 1 1058 228 297 71 38 chr3 62069637 62069875 -97529908 + L1MC4 LINE L1 7153 7398 -644 1 1058 1906 174 8 84 chr3 62070914 62071297 -97528486 - ORR1B1 LTR MaLR 0 394 41 1 1058 383 327 99 42 chr3 62072158 62072442 -97527341 + Lx8 LINE L1 6067 6366 -1107 1 1058 428 327 84 32 chr3 62073348 62073429 -97526354 + RSINE1 SINE B4 3 81 -84 1 1058 3064 33 3 0 chr3 62073429 62073796 -97525987 + L1Md_F2 LINE L1 6215 6582 0 1 1058 428 327 84 32 chr3 62073796 62073869 -97525914 + RSINE1 SINE B4 82 164 -1 1 1058 735 193 0 0 chr3 62074002 62074121 -97525662 + B3 SINE B2 9 127 -89 1 1058 691 191 191 0 chr3 62074849 62075038 -97524745 - URR1A DNA MER1_type 0 226 2 1 1058 180 298 21 0 chr3 62076409 62076456 -97523327 - L2c LINE L2 -228 3159 3112 1 1058 634 200 103 7 chr3 62076737 62076873 -97522910 + B1_Mur2 SINE Alu 1 149 0 1 1058 537 138 8 25 chr3 62076873 62076992 -97522791 + A-rich Low_complexity Low_complexity 1 117 0 1 1058 450 0 0 0 chr3 62077168 62077218 -97522565 + (CA)n Simple_repeat Simple_repeat 2 51 0 1 1058 5941 135 110 14 chr3 62077334 62078440 -97521343 - RMER12 LTR ERVK -109 1213 1 1 1058 327 188 240 0 chr3 62078690 62078786 -97520997 - PB1D9 SINE Alu -1 119 1 1 1058 509 319 71 24 chr3 62079399 62079694 -97520089 - L1MA9 LINE L1 -339 5973 5665 1 1058 305 286 40 74 chr3 62079721 62080025 -97519758 + L1MA6 LINE L1 5998 6300 0 1 1058 562 148 118 14 chr3 62080193 62080307 -97519476 - RMER4A LTR ERVK 0 466 352 1 1058 561 30 0 0 chr3 62080307 62080374 -97519409 + (GA)n Simple_repeat Simple_repeat 1 67 0 1 1058 562 148 118 14 chr3 62080374 62080403 -97519380 - RMER4A LTR ERVK -115 351 309 1 1058 490 132 36 0 chr3 62080406 62080489 -97519294 - RMER4A LTR ERVK -1 465 380 1 1058 618 51 0 0 chr3 62080494 62080572 -97519211 + (GA)n Simple_repeat Simple_repeat 2 79 0 1 1058 999 226 114 24 chr3 62080623 62080913 -97518870 - RLTR20C LTR ERVK -19 515 200 1 1058 1067 188 70 16 chr3 62080916 62081068 -97518715 + RLTR20A LTR ERVK 286 450 -91 1 1058 324 0 0 0 chr3 62081068 62081104 -97518679 + (TG)n Simple_repeat Simple_repeat 2 37 0 1 1058 1067 188 70 16 chr3 62081104 62081194 -97518589 + RLTR20A LTR ERVK 451 540 -1 1 1058 1458 170 47 4 chr3 62081194 62081469 -97518314 - RMER4A LTR ERVK -179 287 1 1 1058 228 143 0 0 chr3 62081821 62081863 -97517920 + (CAGA)n Simple_repeat Simple_repeat 2 43 0 1 1058 252 0 0 0 chr3 62082724 62082752 -97517031 + (TA)n Simple_repeat Simple_repeat 2 29 0 1 1058 1537 177 45 22 chr3 62083859 62084171 -97515612 + Lx4B LINE L1 6733 7051 -7 1 1058 318 348 70 0 chr3 62084386 62084501 -97515282 + MTEa LTR MaLR 1 123 -256 1 1058 230 288 142 18 chr3 62084594 62084707 -97515076 + MTEa LTR MaLR 253 379 0 1 1058 378 0 0 0 chr3 62085346 62085388 -97514395 + (TG)n Simple_repeat Simple_repeat 2 43 0 1 1058 694 262 105 0 chr3 62085446 62085637 -97514146 - B3 SINE B2 -4 212 2 1 1058 346 375 10 39 chr3 62087073 62087281 -97512502 - MamRep434 DNA TcMar -220 206 5 1 1058 616 324 34 0 chr3 62087428 62087607 -97512176 + ID_B1 SINE B4 1 185 -39 1 1058 272 323 19 68 chr3 62087516 62087619 -97512164 + PB1D10 SINE Alu 12 109 -8 1 1058 23 0 0 0 chr3 62087959 62087982 -97511801 + AT_rich Low_complexity Low_complexity 1 23 0 1 1058 585 265 8 0 chr3 62088253 62088385 -97511398 - RSINE1 SINE B4 -30 135 3 1 1058 4633 194 16 22 chr3 62088608 62089460 -97510323 - Lx5 LINE L1 -3 7047 6201 1 1058 30192 80 17 5 chr3 62089461 62094582 -97505201 + L1Md_F LINE L1 399 5586 -297 1 1058 7188 68 34 3 chr3 62094582 62095548 -97504235 + L1Md_F2 LINE L1 5587 6582 0 1 1058 19467 170 31 16 chr3 62095550 62098627 -97501156 - Lx5 LINE L1 -835 6215 3046 1 1058 975 63 0 0 chr3 62098627 62098754 -97501029 + (TTC)n Simple_repeat Simple_repeat 3 129 0 1 1058 19467 165 27 17 chr3 62098754 62099747 -97500036 - Lx5 LINE L1 -2832 3045 2065 1 1058 327 104 0 0 chr3 62099747 62099795 -97499988 + (TGG)n Simple_repeat Simple_repeat 3 50 0 1 1058 19467 165 27 17 chr3 62099795 62099816 -97499967 - Lx5 LINE L1 -3813 2064 2050 1 1058 435 19 0 0 chr3 62099816 62099868 -97499915 + (GA)n Simple_repeat Simple_repeat 1 52 0 1 1058 19467 165 27 17 chr3 62099868 62100061 -97499722 - Lx5 LINE L1 -3828 2049 1854 1 1058 773 263 184 25 chr3 62100062 62100344 -97499439 + MT2A LTR ERVL 160 531 -70 1 1058 975 289 46 12 chr3 62100344 62100670 -97499113 - Lx8 LINE L1 -307 7166 6830 1 1058 204 40 0 0 chr3 62101070 62101095 -97498688 + (TTTA)n Simple_repeat Simple_repeat 3 27 0 1 1058 21 36 0 0 chr3 62101338 62101366 -97498417 + AT_rich Low_complexity Low_complexity 1 28 0 1 1058 195 317 61 68 chr3 62101391 62101523 -97498260 + L2c LINE L2 3253 3383 -4 1 1058 2231 191 10 15 chr3 62102269 62102678 -97497105 - MTB_Mm LTR MaLR 0 407 1 1 1058 321 89 0 0 chr3 62103266 62103311 -97496472 + (TTG)n Simple_repeat Simple_repeat 2 46 0 1 1058 366 23 0 0 chr3 62103311 62103354 -97496429 + (TCC)n Simple_repeat Simple_repeat 1 43 0 1 1058 946 259 24 24 chr3 62103469 62103718 -97496065 + MTD LTR MaLR 1 249 -170 1 1058 1193 219 21 4 chr3 62103719 62103953 -97495830 - MTC LTR MaLR -4 417 180 1 1058 9084 68 2 0 chr3 62103953 62105211 -97494572 - L1Md_F2 LINE L1 -1142 4741 3481 1 1058 6280 61 0 8 chr3 62105209 62106065 -97493718 + L1Md_F2 LINE L1 4738 5586 -297 1 1058 7756 60 4 5 chr3 62106066 62107061 -97492722 + L1Md_F2 LINE L1 5588 6581 -1 1 1058 1096 172 27 0 chr3 62107066 62107252 -97492531 - MTC LTR MaLR -230 191 1 1 1058 732 193 78 6 chr3 62107252 62107404 -97492379 + MTD LTR MaLR 242 405 -14 1 1058 12755 94 13 11 chr3 62107415 62110281 -97489502 + L1VL2 LINE L1 116 2982 -633 1 1058 509 146 369 0 chr3 62110335 62110465 -97489318 + B2_Mm1t SINE B2 2 179 -14 1 1058 297 225 27 27 chr3 62110554 62110627 -97489156 + B2_Mm2 SINE B2 47 119 -76 1 1058 10705 36 0 1 chr3 62110643 62112498 -97487285 + L1Md_F2 LINE L1 4592 6444 -138 1 1058 6979 29 0 1 chr3 62112499 62113315 -97486468 + L1Md_A LINE L1 5812 6582 0 1 1058 339 85 0 0 chr3 62114112 62114159 -97485624 + (GGA)n Simple_repeat Simple_repeat 3 49 0 1 1058 1694 266 76 28 chr3 62114623 62115189 -97484594 + RMER1B Other Other 1 593 -473 1 1058 609 232 93 128 chr3 62115192 62115504 -97484279 + RMER1A Other Other 93 393 -637 1 1058 270 186 0 48 chr3 62115524 62115580 -97484203 + RMER1B Other Other 972 1062 -4 1 1058 1185 75 14 0 chr3 62115580 62115727 -97484056 + B1_Mur4 SINE Alu 2 150 0 1 1058 526 263 7 87 chr3 62116000 62116018 -97483765 + B4 SINE B4 68 84 -208 1 1058 296 65 43 0 chr3 62116018 62116064 -97483719 + (CATA)n Simple_repeat Simple_repeat 3 50 0 1 1058 526 263 7 87 chr3 62116064 62116195 -97483588 + B4 SINE B4 85 205 -87 1 1058 771 11 0 0 chr3 62116195 62116283 -97483500 + (TCCC)n Simple_repeat Simple_repeat 4 91 0 1 1058 572 176 7 0 chr3 62116300 62116436 -97483347 + (TG)n Simple_repeat Simple_repeat 2 138 0 1 1058 186 191 0 0 chr3 62116563 62116605 -97483178 + (CA)n Simple_repeat Simple_repeat 2 43 0 1 1058 1094 283 76 13 chr3 62116605 62116953 -97482830 - Lx5 LINE L1 -219 6831 6483 1 1058 1799 160 107 6 chr3 62117008 62117353 -97482430 - L1_Mur3 LINE L1 0 5880 5501 1 1058 593 330 46 32 chr3 62117353 62117569 -97482214 + B4 SINE B4 19 237 -55 1 1058 572 0 15 0 chr3 62117569 62117637 -97482146 + (CA)n Simple_repeat Simple_repeat 2 70 0 1 1058 915 325 43 31 chr3 62117670 62118020 -97481763 + ORR1E LTR MaLR 4 357 -2 1 1058 360 216 0 0 chr3 62118502 62118576 -97481207 + Lx3B LINE L1 6898 6971 -2 1 1058 619 269 0 66 chr3 62118945 62119096 -97480687 + B1_Mur1 SINE Alu 1 141 -8 1 1058 322 206 94 85 chr3 62119570 62119609 -97480174 + RLTR25B LTR ERVK 403 443 -585 1 1058 1250 76 117 0 chr3 62119609 62119780 -97480003 + B2_Mm2 SINE B2 1 191 -4 1 1058 322 206 94 85 chr3 62119780 62119846 -97479937 + RLTR25B LTR ERVK 444 508 -520 1 1058 789 50 0 0 chr3 62119788 62119889 -97479894 + B1_Mus2 SINE Alu 47 147 0 1 1058 1462 150 0 9 chr3 62120099 62120328 -97479455 - RMER15 LTR ERVL -3 572 346 1 1058 3130 61 71 2 chr3 62120663 62121057 -97478726 - BGLII LTR ERVK 0 421 1 1 1058 2857 40 9 3 chr3 62121231 62121556 -97478227 + IAPLTR2b LTR ERVK 1 327 0 1 1058 377 244 0 71 chr3 62121572 62121656 -97478127 + RSINE1 SINE B4 86 163 -2 1 1058 798 270 66 9 chr3 62121824 62122052 -97477731 + Lx8 LINE L1 7224 7464 -9 1 1058 880 241 116 40 chr3 62123237 62123540 -97476243 - Lx8 LINE L1 -2 7471 7146 1 1058 604 276 57 6 chr3 62123774 62123931 -97475852 - B3 SINE B2 0 216 52 1 1058 394 309 94 59 chr3 62123904 62124107 -97475676 + MTD LTR MaLR 58 267 -152 1 1058 5526 172 35 13 chr3 62124087 62125155 -97474628 - ORR1B2-int LTR MaLR -418 1091 1 1 1058 1113 158 14 42 chr3 62125155 62125367 -97474416 - ORR1B2 LTR MaLR 0 367 162 1 1058 469 248 74 8 chr3 62125364 62125486 -97474297 + MTD LTR MaLR 290 419 0 1 1058 367 310 48 133 chr3 62126010 62126304 -97473479 + MER102a DNA MER1_type 14 282 -48 1 1058 207 0 0 0 chr3 62127009 62127032 -97472751 + (TTG)n Simple_repeat Simple_repeat 2 24 0 1 1058 260 250 0 129 chr3 62127040 62127141 -97472642 - L1MC LINE L1 -1947 5838 5751 1 1058 32 75 0 0 chr3 62127432 62127499 -97472284 + AT_rich Low_complexity Low_complexity 1 67 0 1 1058 23 33 0 0 chr3 62127929 62127959 -97471824 + AT_rich Low_complexity Low_complexity 1 30 0 1 1059 1048 283 16 0 chr3 62128201 62128448 -97471335 + B4A SINE B4 1 251 -41 1 1059 1079 253 106 17 chr3 62128863 62129156 -97470627 + MTE2b LTR MaLR 52 370 -9 1 1059 261 0 0 0 chr3 62129428 62129457 -97470326 + (CA)n Simple_repeat Simple_repeat 2 30 0 1 1059 268 239 5 0 chr3 62130060 62130139 -97469644 - L1_Mur3 LINE L1 -1008 5436 5323 2 1059 256 255 53 0 chr3 62130193 62130287 -97469496 - L1M5 LINE L1 -868 5278 5180 2 1059 316 268 0 11 chr3 62131736 62131823 -97467960 + MER53 DNA hAT 1 86 -107 2 1059 755 165 8 0 chr3 62132957 62133078 -97466705 + MT2A LTR ERVL 338 459 -74 2 1059 232 180 32 16 chr3 62133078 62133140 -97466643 + (TATATG)n Simple_repeat Simple_repeat 2 64 0 2 1059 358 45 15 0 chr3 62133140 62133207 -97466576 + MT2A LTR ERVL 466 533 0 2 1059 223 130 43 0 chr3 62133350 62133396 -97466387 + T-rich Low_complexity Low_complexity 6 53 0 2 1059 825 361 47 9 chr3 62133428 62133858 -97465925 + Lx8 LINE L1 6811 7256 -217 2 1059 277 213 0 32 chr3 62133866 62133929 -97465854 + RMER15 LTR ERVL 408 468 -107 2 1059 645 155 151 27 chr3 62134506 62134652 -97465131 + Lx4B LINE L1 6775 6938 -120 2 1059 459 0 0 0 chr3 62135004 62135055 -97464728 + (GAAA)n Simple_repeat Simple_repeat 2 52 0 2 1059 186 43 0 0 chr3 62135340 62135363 -97464420 + (TCC)n Simple_repeat Simple_repeat 2 24 0 2 1059 763 128 88 22 chr3 62135390 62135526 -97464257 - B1_Mus1 SINE Alu -1 147 3 2 1059 1028 293 104 15 chr3 62135530 62135856 -97463927 - MTD LTR MaLR -14 405 51 2 1059 198 0 0 0 chr3 62137096 62137118 -97462665 + (A)n Simple_repeat Simple_repeat 1 22 0 2 1059 1950 117 78 134 chr3 62138127 62138514 -97461269 - RLTR8 LTR ERVK 0 365 1 2 1059 276 30 0 0 chr3 62139497 62139530 -97460253 + (CA)n Simple_repeat Simple_repeat 2 34 0 2 1059 315 0 0 0 chr3 62139530 62139564 -97460219 + (GA)n Simple_repeat Simple_repeat 2 36 0 2 1059 874 147 15 7 chr3 62139676 62139813 -97459970 - B1_Mur3 SINE Alu -7 142 5 2 1059 2458 179 42 32 chr3 62139827 62140378 -97459405 + Lx3C LINE L1 6464 7009 0 2 1059 401 208 118 26 chr3 62140603 62140756 -97459027 + Kanga1d DNA Tc2 369 535 -74 2 1059 1461 216 137 38 chr3 62140771 62141137 -97458646 - MTB_Mm LTR MaLR -5 402 1 2 1059 23 33 0 0 chr3 62141449 62141479 -97458304 + AT_rich Low_complexity Low_complexity 1 30 0 2 1059 29 0 0 0 chr3 62142857 62142886 -97456897 + GC_rich Low_complexity Low_complexity 1 29 0 2 1059 185 289 121 83 chr3 62146235 62146367 -97453416 - MIR3 SINE MIR -52 156 20 2 1059 1163 140 83 46 chr3 62146425 62146642 -97453141 - URR1A DNA MER1_type -1 225 1 2 1059 577 314 106 16 chr3 62147894 62148140 -97451643 + L2a LINE L2 2813 3080 -339 2 1059 471 289 18 0 chr3 62148141 62148255 -97451528 + B4A SINE B4 2 117 -175 2 1059 562 315 84 24 chr3 62148283 62148618 -97451165 + L2a LINE L2 3072 3426 0 2 1059 263 26 0 49 chr3 62148966 62149007 -97450776 + (TTTTTG)n Simple_repeat Simple_repeat 3 41 0 2 1059 381 188 0 0 chr3 62149548 62149628 -97450155 + (TA)n Simple_repeat Simple_repeat 1 80 0 2 1059 753 204 0 0 chr3 62150288 62150450 -97449333 + (TA)n Simple_repeat Simple_repeat 2 163 0 2 1059 408 219 116 12 chr3 62150457 62150569 -97449214 - B1_Mur2 SINE Alu -27 122 1 2 1059 348 24 0 0 chr3 62151608 62151649 -97448134 + (CA)n Simple_repeat Simple_repeat 2 42 0 2 1059 188 272 27 80 chr3 62151710 62151822 -97447961 - L3 LINE CR1 -2203 2286 2181 2 1059 322 289 70 30 chr3 62151885 62151985 -97447798 - PB1D10 SINE Alu -7 110 7 2 1059 831 166 0 0 chr3 62154371 62154528 -97445255 + CT-rich Low_complexity Low_complexity 2 158 0 2 1059 914 148 15 0 chr3 62154537 62154672 -97445111 - B1_Mus1 SINE Alu -11 137 1 2 1059 279 302 151 0 chr3 62154731 62154817 -97444966 - RSINE1 SINE B4 -20 145 47 2 1059 197 33 33 0 chr3 62155364 62155394 -97444389 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2 1059 1208 58 0 0 chr3 62155396 62155533 -97444250 - B1_Mus1 SINE Alu -7 141 5 2 1059 838 289 82 117 chr3 62155636 62156409 -97443374 - Lx8 LINE L1 -1674 6022 5225 2 1059 1010 95 0 119 chr3 62156409 62156577 -97443206 - B1_Mus1 SINE Alu 0 148 1 2 1059 1518 256 120 61 chr3 62156577 62157307 -97442476 - Lx8 LINE L1 -867 5276 4479 2 1059 433 225 90 0 chr3 62157474 62157563 -97442220 + RSINE1 SINE B4 5 101 -64 2 1059 363 23 0 0 chr3 62157567 62157611 -97442172 + (CA)n Simple_repeat Simple_repeat 2 45 0 2 1059 275 45 45 0 chr3 62158231 62158275 -97441508 + (TTTA)n Simple_repeat Simple_repeat 1 46 0 2 1059 1211 44 0 0 chr3 62158275 62158411 -97441372 - B1_Mus1 SINE Alu -12 136 1 2 1059 234 290 144 7 chr3 62158740 62158886 -97440897 + L2 LINE L2 2174 2339 -1080 2 1059 221 0 35 0 chr3 62158998 62159027 -97440756 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 2 1059 2115 164 89 52 chr3 62160365 62160771 -97439012 + MTC LTR MaLR 1 421 0 2 1059 4749 12 0 0 chr3 62160820 62161313 -97438470 - MT2_Mm LTR ERVL 0 493 1 2 1059 322 0 0 0 chr3 62161313 62161351 -97438432 - MERVL-int LTR ERVL 0 5485 5448 2 1059 387 167 46 35 chr3 62161351 62161438 -97438345 - ORR1A3-int LTR MaLR -1323 640 553 2 1059 48898 14 0 0 chr3 62161438 62166797 -97432986 - MERVL-int LTR ERVL -125 5360 1 2 1059 4749 12 0 0 chr3 62166797 62167290 -97432493 - MT2_Mm LTR ERVL 0 493 1 2 1059 186 43 0 0 chr3 62167407 62167430 -97432353 + (TC)n Simple_repeat Simple_repeat 2 24 0 2 1059 4638 14 2 12 chr3 62167801 62168299 -97431484 + MT2_Mm LTR ERVL 1 493 0 2 1059 6472 16 26 0 chr3 62168299 62169545 -97430238 + MERVL-int LTR ERVL 1 1279 -4206 2 1059 12963 26 1 0 chr3 62169525 62170984 -97428799 + MERVL-int LTR ERVL 3901 5360 -125 2 1059 387 167 46 35 chr3 62170984 62171071 -97428712 + ORR1A3-int LTR MaLR 553 640 -1323 2 1059 322 0 0 0 chr3 62171071 62171109 -97428674 + MERVL-int LTR ERVL 5448 5485 0 2 1059 4620 16 2 12 chr3 62171109 62171607 -97428176 + MT2_Mm LTR ERVL 1 493 0 2 1059 592 287 41 6 chr3 62172480 62172652 -97427131 + B3A SINE B2 2 179 -19 2 1059 24 77 0 0 chr3 62172979 62173031 -97426752 + AT_rich Low_complexity Low_complexity 1 52 0 2 1059 794 276 51 0 chr3 62173031 62173227 -97426556 - B3 SINE B2 -10 206 1 2 1059 945 239 70 33 chr3 62173843 62174085 -97425698 + B4 SINE B4 42 292 0 2 1059 243 0 0 0 chr3 62174089 62174116 -97425667 + (CA)n Simple_repeat Simple_repeat 2 28 0 2 1059 304 258 202 0 chr3 62174200 62174324 -97425459 + MIR SINE MIR 106 254 -8 2 1059 888 316 36 75 chr3 62175842 62176057 -97423726 - MLT1A0 LTR MaLR -10 355 142 2 1059 1357 14 0 0 chr3 62176057 62176204 -97423579 - B1_Mm SINE Alu 0 147 1 2 1059 888 316 36 75 chr3 62176204 62176350 -97423433 - MLT1A0 LTR MaLR -224 141 8 2 1059 4013 79 8 0 chr3 62177461 62177955 -97421828 + L1_Mus1 LINE L1 6068 6565 -2 2 1059 22 0 0 0 chr3 62177955 62177977 -97421806 + AT_rich Low_complexity Low_complexity 1 22 0 2 1059 409 321 145 9 chr3 62179250 62179464 -97420319 + MIRb SINE MIR 26 268 0 2 1059 527 271 135 79 chr3 62179634 62179938 -97419845 + Charlie2a DNA MER1_type 3 323 -2538 2 1059 732 178 89 0 chr3 62180048 62180183 -97419600 + B1_Mur2 SINE Alu 2 148 -1 2 1059 258 167 0 53 chr3 62180183 62180259 -97419524 + (CAAA)n Simple_repeat Simple_repeat 1 72 0 2 1059 582 282 97 24 chr3 62180336 62180737 -97419046 + Charlie2a DNA MER1_type 2374 2829 -32 2 1059 246 128 0 0 chr3 62181344 62181383 -97418400 + (T)n Simple_repeat Simple_repeat 1 39 0 2 1059 459 0 0 0 chr3 62181602 62181653 -97418130 + (CA)n Simple_repeat Simple_repeat 2 52 0 2 1059 306 267 78 43 chr3 62181896 62182037 -97417746 + L1MD3 LINE L1 7850 7995 0 2 1059 21 0 0 0 chr3 62182038 62182059 -97417724 + AT_rich Low_complexity Low_complexity 1 21 0 2 1059 738 216 0 39 chr3 62182127 62182281 -97417502 - B1_Mur2 SINE Alu -1 148 1 2 1059 876 177 13 20 chr3 62182789 62182939 -97416844 - B1_Mur4 SINE Alu 0 150 2 2 1059 191 36 36 0 chr3 62183501 62183529 -97416254 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 2 1059 37 86 0 0 chr3 62183597 62183690 -97416093 + AT_rich Low_complexity Low_complexity 1 93 0 2 1059 315 0 0 0 chr3 62186232 62186267 -97413516 + (TG)n Simple_repeat Simple_repeat 1 35 0 2 1059 543 258 50 0 chr3 62186458 62186578 -97413205 - RSINE1 SINE B4 -28 137 12 2 1059 416 311 102 29 chr3 62186589 62187039 -97412744 - L1MC4a LINE L1 -1869 6013 5531 2 1059 34 24 0 0 chr3 62187982 62188023 -97411760 + AT_rich Low_complexity Low_complexity 1 41 0 2 1059 585 291 106 0 chr3 62188104 62188303 -97411480 + ID_B1 SINE B4 2 221 -3 2 1059 237 98 0 0 chr3 62188651 62188692 -97411091 + (T)n Simple_repeat Simple_repeat 1 41 0 2 1059 1269 48 0 0 chr3 62188692 62188838 -97410945 - B1_Mus2 SINE Alu 0 147 2 2 1059 726 253 153 6 chr3 62188893 62189076 -97410707 + B3 SINE B2 1 210 -6 2 1059 459 0 0 0 chr3 62189374 62189425 -97410358 + (TTA)n Simple_repeat Simple_repeat 1 51 0 2 1059 9050 104 25 30 chr3 62189439 62190823 -97408960 - Lx3A LINE L1 -1 6980 5605 2 1059 394 161 65 0 chr3 62190820 62190913 -97408870 - Lx3A LINE L1 -866 6115 6017 2 1059 766 171 49 28 chr3 62192057 62192201 -97407582 + B1_Mur3 SINE Alu 3 149 0 2 1059 289 207 12 12 chr3 62192229 62192312 -97407471 + GA-rich Low_complexity Low_complexity 2 84 0 2 1059 213 65 0 0 chr3 62192921 62192952 -97406831 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 2 1059 1272 42 0 0 chr3 62192952 62193096 -97406687 - B1_Mus2 SINE Alu -3 144 1 2 1059 216 86 0 0 chr3 62195372 62195407 -97404376 + (T)n Simple_repeat Simple_repeat 1 35 0 2 1059 345 336 93 0 chr3 62195561 62195701 -97404082 - RSINE1 SINE B4 -1 164 12 2 1059 1265 174 226 6 chr3 62195796 62196114 -97403669 + MTD LTR MaLR 32 419 0 2 1059 219 69 0 0 chr3 62196657 62196686 -97403097 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 2 1059 222 312 13 13 chr3 62197178 62197256 -97402527 + (CATA)n Simple_repeat Simple_repeat 1 78 0 2 1059 243 0 0 0 chr3 62197262 62197289 -97402494 + (CA)n Simple_repeat Simple_repeat 2 28 0 2 1059 360 153 0 0 chr3 62198623 62198708 -97401075 + A-rich Low_complexity Low_complexity 1 85 0 2 1059 22 0 0 0 chr3 62199196 62199218 -97400565 + AT_rich Low_complexity Low_complexity 1 22 0 2 1059 751 143 43 0 chr3 62199822 62199962 -97399821 - URR1A DNA MER1_type 0 226 81 2 1059 198 0 0 0 chr3 62200027 62200049 -97399734 + (A)n Simple_repeat Simple_repeat 1 22 0 2 1059 306 0 0 0 chr3 62200616 62200650 -97399133 + (TG)n Simple_repeat Simple_repeat 1 34 0 3 1059 354 23 0 0 chr3 62200650 62200692 -97399091 + (GA)n Simple_repeat Simple_repeat 1 43 0 3 1059 609 243 13 97 chr3 62200694 62200849 -97398934 - RSINE1 SINE B4 -22 143 2 3 1059 958 231 73 105 chr3 62201827 62202142 -97397641 - MTEa LTR MaLR -1 378 74 3 1059 259 333 23 31 chr3 62202031 62202161 -97397622 - MLT2B5 LTR ERVL -392 209 81 3 1059 539 265 54 78 chr3 62202210 62202452 -97397331 - MER82 DNA MER2_type -214 439 204 3 1059 389 214 0 10 chr3 62202567 62202671 -97397112 + (TA)n Simple_repeat Simple_repeat 1 103 0 3 1059 306 0 0 0 chr3 62202671 62202705 -97397078 + (CA)n Simple_repeat Simple_repeat 1 34 0 3 1059 513 291 15 22 chr3 62202712 62202849 -97396934 - MER82 DNA MER2_type -514 139 4 3 1059 201 74 0 0 chr3 62205035 62205062 -97394721 + (TATG)n Simple_repeat Simple_repeat 2 28 0 3 1059 246 291 124 34 chr3 62205167 62205256 -97394527 + PB1D10 SINE Alu 3 99 -21 3 1059 828 230 96 15 chr3 62205722 62205921 -97393862 + B3 SINE B2 2 216 0 3 1059 22 0 0 0 chr3 62206274 62206296 -97393487 + AT_rich Low_complexity Low_complexity 1 22 0 3 1059 882 164 7 7 chr3 62206809 62206950 -97392833 - B1_Mur3 SINE Alu -7 142 2 3 1059 3464 112 20 14 chr3 62206998 62207488 -97392295 + L1_Mus4 LINE L1 6144 6636 0 3 1059 1240 141 0 6 chr3 62207991 62208169 -97391614 + B2_Mm2 SINE B2 1 177 -18 3 1059 817 294 92 19 chr3 62209011 62209531 -97390252 - L1MB8 LINE L1 -11 6167 5610 3 1059 4544 64 7 0 chr3 62210397 62210978 -97388805 + L1_Mus3 LINE L1 6088 6638 0 3 1059 684 88 9 17 chr3 62211110 62211226 -97388557 + (GAGAA)n Simple_repeat Simple_repeat 1 115 0 3 1059 274 289 123 8 chr3 62211252 62211374 -97388409 - ORR1E LTR MaLR -223 136 1 3 1059 809 292 100 34 chr3 62211688 62212039 -97387744 - MLT1D LTR MaLR -13 492 119 3 1059 349 354 51 0 chr3 62212647 62212805 -97386978 - MIR SINE MIR -75 187 22 3 1059 196 349 57 51 chr3 62213913 62214088 -97385695 - L4 LINE RTE -143 1886 1711 3 1059 707 305 6 6 chr3 62215203 62215368 -97384415 + B3A SINE B2 4 168 -30 3 1059 617 306 152 22 chr3 62215474 62215698 -97384085 + B4A SINE B4 35 287 -5 3 1059 197 139 23 0 chr3 62215897 62215940 -97383843 + (CA)n Simple_repeat Simple_repeat 2 45 0 3 1059 459 0 0 0 chr3 62215968 62216019 -97383764 + (TG)n Simple_repeat Simple_repeat 1 51 0 3 1059 188 392 65 0 chr3 62217367 62217474 -97382309 - L2c LINE L2 -194 3193 3080 3 1059 192 235 58 19 chr3 62217935 62217987 -97381796 + MIRc SINE MIR 115 168 -100 3 1059 1812 292 52 32 chr3 62218385 62219064 -97380719 - Lx9 LINE L1 -219 7425 6734 3 1059 765 339 71 83 chr3 62219129 62219804 -97379979 - Lx8 LINE L1 -1021 6452 5786 3 1059 979 331 91 41 chr3 62221813 62222352 -97377431 - MER21B LTR ERV1 -259 604 39 3 1059 306 0 0 0 chr3 62222705 62222739 -97377044 + (TG)n Simple_repeat Simple_repeat 1 34 0 3 1059 465 274 26 0 chr3 62222990 62223107 -97376676 - B1F SINE Alu -12 137 18 3 1059 283 246 91 0 chr3 62225089 62225199 -97374584 - MER20 DNA MER1_type -1 218 99 3 1059 23 0 0 0 chr3 62225672 62225695 -97374088 + AT_rich Low_complexity Low_complexity 1 23 0 3 1059 638 181 9 0 chr3 62225730 62225835 -97373948 + B1_Mur3 SINE Alu 32 137 -12 3 1059 1313 112 4 44 chr3 62226011 62226236 -97373547 - Lx LINE L1 -5 6649 6434 3 1059 1238 62 0 0 chr3 62226455 62226601 -97373182 - B1_Mus2 SINE Alu 0 147 2 3 1059 219 224 0 39 chr3 62226822 62226873 -97372910 + B1F1 SINE Alu 10 58 -91 3 1059 24 32 0 0 chr3 62227181 62227212 -97372571 + AT_rich Low_complexity Low_complexity 1 31 0 3 1059 234 243 86 0 chr3 62227781 62227851 -97371932 + MIRb SINE MIR 37 112 -156 3 1059 237 65 0 0 chr3 62228997 62229028 -97370755 + (CA)n Simple_repeat Simple_repeat 2 32 0 3 1059 182 185 71 36 chr3 62229932 62229988 -97369795 + L4 LINE RTE 638 695 -1334 3 1059 191 88 29 0 chr3 62230171 62230205 -97369578 + (TTTTG)n Simple_repeat Simple_repeat 1 35 0 3 1059 1331 41 0 0 chr3 62230206 62230353 -97369430 - B1_Mm SINE Alu 0 147 1 3 1059 214 325 90 62 chr3 62230791 62230968 -97368815 - L2b LINE L2 -11 3364 3183 3 1059 207 150 50 0 chr3 62231080 62231120 -97368663 + GA-rich Low_complexity Low_complexity 1 42 0 3 1059 189 0 0 0 chr3 62232732 62232753 -97367030 + (TAAAA)n Simple_repeat Simple_repeat 2 22 0 3 1059 274 375 95 0 chr3 62233184 62233384 -97366399 + Charlie22a DNA MER1_type 29 247 -244 3 1059 24 0 0 0 chr3 62235463 62235487 -97364296 + AT_rich Low_complexity Low_complexity 1 24 0 3 1059 32 0 0 0 chr3 62236863 62236895 -97362888 + AT_rich Low_complexity Low_complexity 1 32 0 3 1059 300 70 0 0 chr3 62237150 62237193 -97362590 + (CA)n Simple_repeat Simple_repeat 2 44 0 3 1059 269 200 0 0 chr3 62237203 62237243 -97362540 - MTD LTR MaLR -223 196 157 3 1059 204 40 0 0 chr3 62238100 62238125 -97361658 + (TTTTG)n Simple_repeat Simple_repeat 4 28 0 3 1059 371 309 95 24 chr3 62238271 62238440 -97361343 - MER20 DNA MER1_type -7 212 32 3 1059 1863 129 120 66 chr3 62238536 62238847 -97360936 + ORR1B1 LTR MaLR 1 351 -43 3 1059 1245 68 0 0 chr3 62238847 62238994 -97360789 + B1_Mus1 SINE Alu 2 148 0 3 1059 1863 129 120 66 chr3 62238994 62239048 -97360735 + ORR1B1 LTR MaLR 352 386 -8 3 1059 246 62 0 0 chr3 62239553 62239585 -97360198 + (T)n Simple_repeat Simple_repeat 1 32 0 3 1059 1503 129 25 4 chr3 62239698 62239940 -97359843 - RMER21A LTR ERV1 -231 716 470 3 1059 274 277 24 198 chr3 62239936 62240062 -97359721 - RMER21A LTR ERV1 -843 104 1 3 1059 1369 165 120 69 chr3 62240062 62240385 -97359398 - ORR1C1 LTR MaLR -38 340 1 3 1059 238 280 42 93 chr3 62240939 62241057 -97358726 - PB1D10 SINE Alu -29 120 9 3 1059 488 258 75 0 chr3 62241006 62241126 -97358657 - ID_B1 SINE B4 -84 140 12 3 1059 243 369 88 18 chr3 62242073 62242244 -97357539 + MIRb SINE MIR 78 260 -8 3 1059 361 271 67 50 chr3 62242728 62242907 -97356876 + MER2 DNA MER2_type 162 343 -2 3 1059 2354 106 16 9 chr3 62242988 62243311 -97356472 - ORR1A4 LTR MaLR 0 329 5 3 1059 389 306 69 27 chr3 62243923 62244111 -97355672 - MIR SINE MIR -59 203 8 3 1059 198 191 0 0 chr3 62244211 62244258 -97355525 + T-rich Low_complexity Low_complexity 1 47 0 3 1059 26 0 0 0 chr3 62245862 62245888 -97353895 + AT_rich Low_complexity Low_complexity 1 26 0 3 1059 1919 196 38 13 chr3 62245905 62246278 -97353505 - Lx5 LINE L1 -1 7049 6668 3 1059 282 106 0 0 chr3 62246379 62246426 -97353357 + (TG)n Simple_repeat Simple_repeat 1 47 0 3 1059 461 258 108 8 chr3 62246451 62246580 -97353203 - RSINE1 SINE B4 -21 144 3 3 1059 21 36 0 0 chr3 62246844 62246872 -97352911 + AT_rich Low_complexity Low_complexity 1 28 0 3 1059 252 337 0 0 chr3 62247279 62247362 -97352421 + ID4_ SINE ID 1 83 0 3 1059 3012 45 5 0 chr3 62248149 62248524 -97351259 + MTB LTR MaLR 1 377 -23 3 1059 333 0 0 0 chr3 62248758 62248795 -97350988 + (T)n Simple_repeat Simple_repeat 1 37 0 3 1059 24 0 0 0 chr3 62249143 62249167 -97350616 + AT_rich Low_complexity Low_complexity 1 24 0 3 1059 381 58 0 0 chr3 62249619 62249671 -97350112 + (TG)n Simple_repeat Simple_repeat 1 52 0 3 1059 218 316 114 69 chr3 62250361 62250694 -97349089 - L2 LINE L2 -2157 1262 915 3 1059 759 260 30 50 chr3 62254088 62254290 -97345493 + B3 SINE B2 2 199 -17 3 1059 323 104 89 7 chr3 62254290 62254425 -97345358 + (TTATA)n Simple_repeat Simple_repeat 5 150 0 3 1059 267 169 42 0 chr3 62255177 62255248 -97344535 + CT-rich Low_complexity Low_complexity 3 76 0 3 1059 675 161 107 8 chr3 62255249 62255380 -97344403 - B1_Mus2 SINE Alu -2 145 2 3 1059 1998 294 95 28 chr3 62256016 62256772 -97343011 - Lx8 LINE L1 -251 7222 6416 3 1059 226 395 88 7 chr3 62256803 62256951 -97342832 - RMER13A LTR ERVK -116 744 585 3 1059 705 215 0 30 chr3 62257089 62257223 -97342560 - RMER13A LTR ERVK -567 293 164 3 1059 724 147 385 0 chr3 62258674 62258830 -97340953 - B3 SINE B2 0 216 1 3 1059 249 234 169 0 chr3 62259114 62259191 -97340592 - PB1D10 SINE Alu -7 110 21 3 1060 260 274 99 106 chr3 62260641 62260792 -97338991 - B4A SINE B4 -107 185 36 3 1060 243 0 0 0 chr3 62260830 62260857 -97338926 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 3 1060 673 212 105 13 chr3 62261155 62261308 -97338475 - B3A SINE B2 -22 176 10 3 1060 362 268 173 0 chr3 62262690 62262817 -97336966 - B1F SINE Alu 0 149 1 3 1060 304 259 52 69 chr3 62266289 62266405 -97333378 - MLT1E3 LTR MaLR 0 624 511 3 1060 315 322 11 11 chr3 62267534 62267622 -97332161 - LTR16A LTR ERVL -256 195 108 3 1060 429 255 92 0 chr3 62267768 62267909 -97331874 + L1MC LINE L1 5004 5157 -989 3 1060 1686 123 40 0 chr3 62267964 62268216 -97331567 + Lx7 LINE L1 6771 7032 -664 3 1060 888 240 156 0 chr3 62268651 62268876 -97330907 + Lx6 LINE L1 7019 7278 -182 3 1060 327 310 50 25 chr3 62268933 62269052 -97330731 + Lx7 LINE L1 7178 7299 -397 3 1060 21 71 0 0 chr3 62269265 62269307 -97330476 + AT_rich Low_complexity Low_complexity 1 42 0 3 1060 283 234 78 0 chr3 62269542 62269619 -97330164 + PB1D9 SINE Alu 23 105 -15 3 1060 768 200 148 26 chr3 62269651 62269931 -97329852 + L1MC LINE L1 5477 5789 -2206 3 1060 1910 186 82 26 chr3 62270078 62270469 -97329314 + MTC LTR MaLR 1 413 -8 3 1060 217 176 59 0 chr3 62270699 62270767 -97329016 + (TA)n Simple_repeat Simple_repeat 2 73 0 4 1060 571 297 76 31 chr3 62271611 62271815 -97327968 + B3A SINE B2 1 210 -6 4 1060 930 278 109 35 chr3 62271857 62272345 -97327438 + L1ME1 LINE L1 5601 6124 -55 4 1060 271 294 28 19 chr3 62273570 62273663 -97326120 + ID2 SINE ID 2 90 -62 4 1060 229 198 123 13 chr3 62273706 62273786 -97325997 - MIRb SINE MIR 0 262 175 4 1060 1162 52 0 0 chr3 62274922 62275058 -97324725 + B1_Mus1 SINE Alu 2 137 -11 4 1060 259 279 29 0 chr3 62275091 62275159 -97324624 - RSINE1 SINE B4 -19 146 77 4 1060 428 275 74 8 chr3 62276327 62276448 -97323335 - B3 SINE B2 -4 212 84 4 1060 285 29 0 0 chr3 62276810 62276844 -97322939 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 4 1060 535 251 86 59 chr3 62277088 62277274 -97322509 - B3A SINE B2 -6 192 2 4 1060 294 325 79 8 chr3 62277325 62277452 -97322331 + MER58A DNA MER1_type 49 184 -40 4 1060 609 242 32 28 chr3 62277811 62277965 -97321818 - ID_B1 SINE B4 -56 236 85 4 1060 272 323 42 21 chr3 62277999 62278094 -97321689 + PB1D10 SINE Alu 1 97 -20 4 1060 276 127 0 0 chr3 62279030 62279085 -97320698 + (CAGA)n Simple_repeat Simple_repeat 4 58 0 4 1060 25 51 0 0 chr3 62279749 62279788 -97319995 + AT_rich Low_complexity Low_complexity 1 39 0 4 1060 2031 119 17 35 chr3 62279790 62280138 -97319645 + Lx3B LINE L1 6630 6971 -2 4 1060 1063 81 0 0 chr3 62280158 62280294 -97319489 + B1_Mus2 SINE Alu 1 136 -11 4 1060 356 0 0 22 chr3 62280296 62280341 -97319442 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 4 1060 656 234 192 17 chr3 62280394 62280681 -97319102 + L1_Rod LINE L1 1810 2146 -3701 4 1060 429 217 13 19 chr3 62280687 62280801 -97318982 + L1_Rod LINE L1 2485 2585 -3262 4 1060 1090 46 0 38 chr3 62281997 62282155 -97317628 + L1Md_F2 LINE L1 6431 6582 0 4 1060 1154 50 0 0 chr3 62282448 62282587 -97317196 + B1_Mus2 SINE Alu 2 140 -7 4 1060 207 0 0 0 chr3 62282587 62282610 -97317173 + (CAA)n Simple_repeat Simple_repeat 2 24 0 4 1060 22 0 0 0 chr3 62283210 62283232 -97316551 + AT_rich Low_complexity Low_complexity 1 22 0 4 1060 1248 67 0 0 chr3 62283558 62283738 -97316045 + (GA)n Simple_repeat Simple_repeat 1 180 0 4 1060 269 310 33 33 chr3 62283769 62283889 -97315894 + PB1D9 SINE Alu 1 120 0 4 1060 2048 157 205 8 chr3 62284112 62284581 -97315202 + RLTR31_Mm LTR ERVK 1 561 0 4 1060 192 77 0 0 chr3 62284844 62284870 -97314913 + (GAAA)n Simple_repeat Simple_repeat 3 28 0 4 1060 284 290 13 0 chr3 62285128 62285242 -97314541 - L1MA4A LINE L1 -117 6180 6065 4 1060 759 215 0 0 chr3 62285547 62285763 -97314020 + (TA)n Simple_repeat Simple_repeat 1 216 0 4 1060 351 0 0 0 chr3 62285763 62285802 -97313981 + (CA)n Simple_repeat Simple_repeat 2 40 0 4 1060 217 25 23 70 chr3 62285923 62285966 -97313817 + (TTTTG)n Simple_repeat Simple_repeat 2 42 0 4 1060 977 253 86 93 chr3 62286211 62286608 -97313175 - RMER2 LTR ERV1 0 567 174 4 1060 368 247 104 16 chr3 62287326 62287577 -97312206 + L1M2 LINE L1 5409 5681 -610 4 1060 351 0 0 0 chr3 62290080 62290119 -97309664 + (TG)n Simple_repeat Simple_repeat 2 40 0 4 1060 312 256 51 0 chr3 62290120 62290198 -97309585 + Lx9 LINE L1 6340 6421 -1223 4 1060 2218 230 21 12 chr3 62290217 62290781 -97309002 + Lx9 LINE L1 7074 7642 -2 4 1060 538 188 0 20 chr3 62290780 62290878 -97308905 - Lx9 LINE L1 -414 7230 7135 4 1060 27 0 0 0 chr3 62290990 62291017 -97308766 + AT_rich Low_complexity Low_complexity 1 27 0 4 1060 267 294 85 76 chr3 62291226 62291344 -97308439 - B3A SINE B2 -4 194 76 4 1060 258 258 152 0 chr3 62291548 62291614 -97308169 - B3 SINE B2 -140 76 1 4 1060 22 0 0 0 chr3 62294816 62294838 -97304945 + AT_rich Low_complexity Low_complexity 1 22 0 4 1060 520 195 22 61 chr3 62297908 62298070 -97301713 + B1_Mus1 SINE Alu 2 150 0 4 1060 266 274 71 31 chr3 62298124 62298222 -97301561 - PB1D9 SINE Alu -12 108 7 4 1060 322 319 11 11 chr3 62298134 62298226 -97301557 - ID_B1 SINE B4 -51 173 82 4 1060 365 293 45 75 chr3 62299095 62299228 -97300555 + RSINE1 SINE B4 37 165 0 4 1060 21 82 0 0 chr3 62299228 62299277 -97300506 + AT_rich Low_complexity Low_complexity 1 49 0 4 1060 666 134 15 1 chr3 62300068 62300179 -97299604 + B2_Mm2 SINE B2 33 155 -61 4 1060 237 33 0 0 chr3 62300192 62300222 -97299561 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 4 1060 31 26 0 0 chr3 62301014 62301052 -97298731 + AT_rich Low_complexity Low_complexity 1 38 0 4 1060 639 244 43 99 chr3 62301195 62301427 -97298356 + MER2 DNA MER2_type 122 340 -5 4 1060 393 247 62 0 chr3 62302996 62303093 -97296690 + B4A SINE B4 184 286 -6 4 1060 559 289 12 36 chr3 62303217 62303382 -97296401 + B3A SINE B2 8 168 -30 4 1060 542 259 33 39 chr3 62303485 62303600 -97296183 + B4 SINE B4 113 229 -63 4 1060 472 234 72 0 chr3 62303600 62303711 -97296072 + PB1D9 SINE Alu 2 120 0 4 1060 542 259 33 39 chr3 62303711 62303776 -97296007 + B4 SINE B4 230 292 0 4 1060 730 214 7 20 chr3 62305544 62305692 -97294091 + B1_Mus2 SINE Alu 2 147 0 4 1060 231 196 20 0 chr3 62307601 62307652 -97292131 + MER5A1 DNA MER1_type 112 163 -3 4 1060 231 196 20 0 chr3 62308414 62308465 -97291318 + MER5A1 DNA MER1_type 112 163 -3 4 1060 799 193 14 88 chr3 62308592 62308808 -97290975 + URR1B DNA MER1_type 26 225 0 4 1060 181 284 45 80 chr3 62308892 62308980 -97290803 + L2c LINE L2 3180 3264 -123 4 1060 275 253 67 33 chr3 62309631 62309721 -97290062 + PB1D10 SINE Alu 1 93 -24 4 1060 257 283 79 48 chr3 62309721 62309755 -97290028 + ID_B1 SINE B4 82 209 -15 4 1060 596 145 171 0 chr3 62309932 62310049 -97289734 + B1_Mur3 SINE Alu 2 138 -11 4 1060 324 0 0 0 chr3 62310052 62310088 -97289695 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 4 1060 182 143 0 51 chr3 62310735 62310794 -97288989 + (CCG)n Simple_repeat Simple_repeat 3 58 0 4 1060 1210 116 16 10 chr3 62311328 62311520 -97288263 + B2_Mm2 SINE B2 3 195 0 4 1060 7326 154 51 10 chr3 62311713 62313091 -97286692 + Lx3C LINE L1 5551 6976 0 4 1060 284 73 0 68 chr3 62313097 62313170 -97286613 + (CTTTA)n Simple_repeat Simple_repeat 1 68 0 4 1060 279 54 0 0 chr3 62313476 62313513 -97286270 + (TTG)n Simple_repeat Simple_repeat 1 37 0 4 1060 1082 91 0 0 chr3 62313513 62313656 -97286127 - B1_Mus1 SINE Alu -4 144 2 4 1060 351 0 0 0 chr3 62313684 62313723 -97286060 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 4 1060 518 343 28 11 chr3 62314087 62314267 -97285516 + MER44C DNA MER2_type 31 213 -520 4 1060 2220 274 107 7 chr3 62314277 62315033 -97284750 + RCHARR1 DNA MER1_type 3 834 -140 4 1060 360 353 8 0 chr3 62315047 62315180 -97284603 - ID_B1 SINE B4 -5 219 86 4 1060 360 64 0 0 chr3 62315204 62315251 -97284532 + (TCTA)n Simple_repeat Simple_repeat 4 50 0 4 1060 968 131 54 0 chr3 62315253 62315421 -97284362 - B2_Mm2 SINE B2 -18 177 1 4 1060 35351 65 1 2 chr3 62315425 62321452 -97278331 - L1Md_F2 LINE L1 -1 6584 471 4 1060 360 246 34 61 chr3 62321457 62321535 -97278248 + RCHARR1 DNA MER1_type 832 910 -64 4 1060 3539 77 15 2 chr3 62321535 62322004 -97277779 + MT2C_Mm LTR ERVL 1 475 0 4 1060 360 246 34 61 chr3 62322004 62322072 -97277711 + RCHARR1 DNA MER1_type 911 974 0 4 1060 422 326 41 61 chr3 62322079 62322275 -97277508 + MER44C DNA MER2_type 219 410 -323 4 1060 37241 31 12 11 chr3 62322276 62323922 -97275861 - L1Md_A LINE L1 -1 6581 4915 4 1060 225 183 46 77 chr3 62323922 62323987 -97275796 + RMER20A LTR ERVK 186 248 -268 4 1060 37241 31 12 11 chr3 62323987 62327649 -97272134 - L1Md_A LINE L1 -1 4914 1203 4 1060 4716 134 91 26 chr3 62327615 62328499 -97271284 - L1Md_F LINE L1 -5380 1139 199 4 1060 538 281 88 0 chr3 62328501 62328661 -97271122 + MER44C DNA MER2_type 402 575 -158 4 1060 301 215 92 0 chr3 62328741 62328806 -97270977 + MER34A LTR ERV1 498 568 -3 4 1060 638 182 0 0 chr3 62329645 62329755 -97270028 + MTD LTR MaLR 1 110 -309 4 1060 710 279 61 30 chr3 62330116 62330378 -97269405 + Lx8 LINE L1 7199 7468 -5 4 1060 307 314 201 62 chr3 62330413 62330736 -97269047 - MER77 LTR ERVL -98 509 142 4 1060 525 190 304 0 chr3 62331660 62331818 -97267965 - B3 SINE B2 -9 207 2 4 1060 194 116 23 0 chr3 62331850 62331893 -97267890 + (TTTTTG)n Simple_repeat Simple_repeat 4 47 0 4 1060 942 74 0 0 chr3 62331899 62332021 -97267762 - B1_Mm SINE Alu 0 147 26 4 1060 192 97 0 0 chr3 62332171 62332202 -97267581 + (T)n Simple_repeat Simple_repeat 1 31 0 4 1060 231 217 0 0 chr3 62332487 62332547 -97267236 + CT-rich Low_complexity Low_complexity 3 62 0 4 1060 372 191 288 9 chr3 62332551 62332662 -97267121 - B1_Mur1 SINE Alu -7 142 1 4 1060 294 250 79 0 chr3 62332685 62332761 -97267022 - ID_B1 SINE B4 -3 221 140 4 1060 418 280 48 0 chr3 62333042 62333167 -97266616 - B1F1 SINE Alu -1 148 18 4 1060 234 326 57 85 chr3 62333046 62333187 -97266596 - B4A SINE B4 -73 219 83 4 1060 1333 87 38 0 chr3 62336154 62336338 -97263445 + B2_Mm2 SINE B2 1 191 -4 4 1060 259 333 33 22 chr3 62336338 62336430 -97263353 + MER81 DNA AcHobo 4 96 -18 4 1060 550 273 117 83 chr3 62336608 62336788 -97262995 - B3A SINE B2 -8 187 2 4 1060 26 30 0 0 chr3 62336852 62336885 -97262898 + AT_rich Low_complexity Low_complexity 1 33 0 4 1060 982 88 0 0 chr3 62337265 62337401 -97262382 - B1_Mm SINE Alu 0 147 12 4 1060 406 267 74 85 chr3 62337272 62337448 -97262335 - B4A SINE B4 -72 220 47 4 1060 697 264 75 30 chr3 62338227 62338493 -97261290 + B4A SINE B4 2 279 -13 4 1060 2915 85 5 10 chr3 62338874 62339279 -97260504 + RLTR9D LTR ERVK 1 403 0 4 1060 538 313 46 7 chr3 62339329 62339480 -97260303 + RSINE1 SINE B4 2 158 -7 4 1060 831 291 19 5 chr3 62339526 62339733 -97260050 + B3 SINE B2 7 216 0 4 1060 446 273 138 30 chr3 62340000 62340298 -97259485 + L1M3 LINE L1 5290 5619 -561 5 1060 830 255 14 34 chr3 62341236 62341443 -97258340 + B3 SINE B2 1 203 -13 5 1060 327 336 0 0 chr3 62341801 62341914 -97257869 + PB1D10 SINE Alu 1 113 -4 5 1060 24 32 0 0 chr3 62342674 62342705 -97257078 + AT_rich Low_complexity Low_complexity 1 31 0 5 1060 390 42 0 0 chr3 62343212 62343260 -97256523 + (TCTA)n Simple_repeat Simple_repeat 1 48 0 5 1060 207 0 0 0 chr3 62343260 62343283 -97256500 + (CTTA)n Simple_repeat Simple_repeat 2 24 0 5 1060 397 162 157 28 chr3 62343338 62343446 -97256337 - B4 SINE B4 -169 123 2 5 1060 195 69 0 0 chr3 62344627 62344656 -97255127 + (CA)n Simple_repeat Simple_repeat 2 30 0 5 1060 600 288 78 18 chr3 62344682 62345015 -97254768 + L1MD LINE L1 2346 2698 -3448 5 1060 2347 233 57 93 chr3 62345037 62345874 -97253909 + RLTR40 LTR ERVK 1 807 -10 5 1060 1725 268 114 19 chr3 62345904 62346878 -97252905 + L1MD LINE L1 2764 3830 -2316 5 1060 35536 41 6 4 chr3 62346870 62352114 -97247669 + L1Md_T LINE L1 238 5589 -297 5 1060 8239 37 6 0 chr3 62352114 62353103 -97246680 + L1Md_T LINE L1 5590 6584 -1 5 1060 259 235 103 0 chr3 62353107 62353175 -97246608 + L1MD LINE L1 3822 3896 -2250 5 1060 1746 231 6 18 chr3 62353175 62353518 -97246265 + MTC LTR MaLR 1 339 -82 5 1060 1430 265 104 53 chr3 62353594 62354180 -97245603 + L1MD LINE L1 4233 4849 -1297 5 1060 609 311 16 5 chr3 62354180 62354374 -97245409 + B3A SINE B2 3 198 0 5 1060 1430 265 104 53 chr3 62354374 62354671 -97245112 + L1MD LINE L1 4850 5161 -985 5 1060 268 286 141 10 chr3 62354678 62354777 -97245006 - MER5A1 DNA MER1_type -45 121 10 5 1060 180 0 0 0 chr3 62354951 62354971 -97244812 + (CAAAAA)n Simple_repeat Simple_repeat 5 24 0 5 1060 302 307 58 14 chr3 62355446 62355585 -97244198 + B1_Mur1 SINE Alu 5 149 0 5 1060 40 21 0 0 chr3 62355661 62355708 -97244075 + AT_rich Low_complexity Low_complexity 1 47 0 5 1060 229 372 26 0 chr3 62355747 62355825 -97243958 + ID2 SINE ID 2 81 -2 5 1060 2110 157 25 67 chr3 62355939 62356342 -97243441 - ORR1B1 LTR MaLR -8 386 1 5 1060 412 279 142 24 chr3 62356772 62356941 -97242842 - B3A SINE B2 -2 196 8 5 1060 242 333 57 11 chr3 62357029 62357117 -97242666 + MIR3 SINE MIR 86 177 -31 5 1060 21 71 0 0 chr3 62357824 62357866 -97241917 + AT_rich Low_complexity Low_complexity 1 42 0 5 1060 1006 108 0 45 chr3 62357896 62358051 -97241732 + B1_Mus1 SINE Alu 1 148 0 5 1060 226 114 68 54 chr3 62358052 62358126 -97241657 + A-rich Low_complexity Low_complexity 4 78 0 5 1060 514 377 83 14 chr3 62358589 62358912 -97240871 + MLT2E LTR ERVL 3 353 -275 5 1060 813 241 99 0 chr3 62358937 62359128 -97240655 - B3 SINE B2 -6 210 1 5 1060 580 187 37 0 chr3 62359323 62359430 -97240353 + ORR1D2 LTR MaLR 260 370 0 5 1060 267 301 60 0 chr3 62359457 62359540 -97240243 - MTEa LTR MaLR -291 88 1 5 1060 1210 323 66 79 chr3 62360626 62362408 -97237375 + L1_Rod LINE L1 1203 2961 -2886 5 1060 22 0 0 0 chr3 62362893 62362915 -97236868 + AT_rich Low_complexity Low_complexity 1 22 0 5 1060 709 345 89 18 chr3 62363332 62363731 -97236052 + MLT2B3 LTR ERVL 5 411 -104 5 1060 191 61 30 0 chr3 62363731 62363764 -97236019 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 5 1060 705 369 70 56 chr3 62363764 62363846 -97235937 + MLT2B3 LTR ERVL 412 493 -22 5 1060 4098 40 32 2 chr3 62364665 62365168 -97234615 + L1Md_F2 LINE L1 6061 6578 -4 5 1060 357 267 23 0 chr3 62365452 62365538 -97234245 + ORR1D2 LTR MaLR 283 370 0 5 1060 878 277 92 73 chr3 62365906 62366221 -97233562 - MER2 DNA MER2_type -9 336 16 5 1060 3068 261 58 30 chr3 62366350 62366836 -97232947 + Lx7 LINE L1 6557 7052 -644 5 1060 335 41 20 0 chr3 62366836 62366885 -97232898 + (CAAAA)n Simple_repeat Simple_repeat 2 51 0 5 1060 3068 261 58 30 chr3 62366885 62367303 -97232480 + Lx7 LINE L1 7053 7485 -211 5 1060 405 183 0 0 chr3 62367686 62367707 -97232076 + T-rich Low_complexity Low_complexity 62 82 0 5 1060 1023 128 0 0 chr3 62367707 62367855 -97231928 - B1_Mus1 SINE Alu 0 148 1 5 1060 405 183 0 0 chr3 62367855 62367915 -97231868 + T-rich Low_complexity Low_complexity 2 61 0 5 1060 2589 192 12 33 chr3 62368374 62368890 -97230893 + RLTR16 LTR ERVK 1 505 0 5 1060 23 0 0 0 chr3 62369745 62369768 -97230015 + AT_rich Low_complexity Low_complexity 1 23 0 5 1060 876 201 74 83 chr3 62370600 62370926 -97228857 - RMER17C LTR ERVK -8 402 80 5 1060 871 224 45 102 chr3 62370930 62370971 -97228812 - RMER17B LTR ERVK -519 439 400 5 1060 1025 139 0 16 chr3 62370971 62371154 -97228629 + GA-rich Low_complexity Low_complexity 1 180 0 5 1060 871 224 45 102 chr3 62371154 62371445 -97228338 - RMER17B LTR ERVK -559 399 126 5 1060 1127 88 0 0 chr3 62372932 62373079 -97226704 - B1_Mus1 SINE Alu 0 148 2 5 1060 329 365 14 14 chr3 62374209 62374356 -97225427 + L1ME3B LINE L1 5910 6056 -184 5 1060 3547 260 103 92 chr3 62374394 62375656 -97224127 + L1M3 LINE L1 2466 3754 -2386 5 1060 581 294 92 97 chr3 62375656 62376037 -97223746 + MTE2a LTR MaLR 1 379 0 5 1060 386 250 47 17 chr3 62376039 62376151 -97223632 + B1F SINE Alu 5 125 -2 5 1060 3547 260 103 92 chr3 62376151 62376923 -97222860 + L1M3 LINE L1 3757 4623 -1517 5 1060 1196 14 7 0 chr3 62376923 62377065 -97222718 + (GAA)n Simple_repeat Simple_repeat 2 144 0 5 1060 3547 260 103 92 chr3 62377065 62377271 -97222512 + L1M3 LINE L1 4624 4846 -1294 5 1060 201 191 21 0 chr3 62377271 62377318 -97222465 + (CAAA)n Simple_repeat Simple_repeat 1 48 0 5 1060 35366 48 0 4 chr3 62377319 62382740 -97217043 + L1Md_T LINE L1 95 5589 -297 5 1060 8387 35 0 0 chr3 62382740 62383736 -97216047 + L1Md_T LINE L1 5590 6585 0 5 1060 643 273 42 16 chr3 62384104 62384294 -97215489 + MER3 DNA MER1_type 7 201 -8 5 1060 910 215 53 5 chr3 62384354 62384541 -97215242 - URR1B DNA MER1_type -29 196 1 5 1060 432 0 0 0 chr3 62384733 62384781 -97215002 + (TTA)n Simple_repeat Simple_repeat 3 50 0 5 1060 250 273 182 28 chr3 62385453 62385596 -97214187 + L3 LINE CR1 2036 2200 -2289 5 1060 504 0 0 0 chr3 62386748 62386804 -97212979 + (GA)n Simple_repeat Simple_repeat 2 57 0 5 1060 408 279 0 0 chr3 62386832 62386918 -97212865 - RSINE1 SINE B4 -77 88 3 5 1060 305 250 27 65 chr3 62387043 62387196 -97212587 - L1MA5 LINE L1 -44 6256 6107 5 1060 327 104 0 0 chr3 62387386 62387434 -97212349 + (TTTTC)n Simple_repeat Simple_repeat 2 49 0 5 1060 184 294 57 34 chr3 62387487 62387575 -97212208 + L3 LINE CR1 3546 3635 -854 5 1060 400 292 55 115 chr3 62388147 62388263 -97211520 + B3 SINE B2 17 127 -89 5 1060 426 39 0 0 chr3 62388263 62388315 -97211468 + (CA)n Simple_repeat Simple_repeat 1 52 0 5 1060 273 292 55 115 chr3 62388315 62388380 -97211403 + B2_Mm2 SINE B2 125 187 -8 5 1060 267 300 154 0 chr3 62388833 62388943 -97210840 - Arthur1 DNA Tip100 -3819 128 2 5 1060 531 299 98 0 chr3 62389044 62389228 -97210555 + MER3 DNA MER1_type 7 208 -1 5 1060 880 247 0 32 chr3 62389412 62389600 -97210183 - B3A SINE B2 -16 182 1 5 1060 321 306 74 35 chr3 62389644 62389847 -97209936 - L1M5 LINE L1 -692 5481 5271 5 132 477 360 95 45 chr3 62389997 62390642 -97209141 + L1MC4a LINE L1 4397 5073 -1073 5 1061 5263 114 22 27 chr3 62390711 62391522 -97208261 - Lx LINE L1 -40 6614 5808 5 1061 273 43 0 42 chr3 62391523 62391560 -97208223 + Lx LINE L1 6603 6639 -15 5 1061 212 0 0 35 chr3 62391560 62391589 -97208194 + (TAA)n Simple_repeat Simple_repeat 2 29 0 5 1061 388 286 62 28 chr3 62392016 62392160 -97207623 + B4A SINE B4 6 154 -138 5 1061 1643 240 14 17 chr3 62392181 62392597 -97207186 - MTD LTR MaLR -4 415 1 5 1061 406 317 199 31 chr3 62392659 62393656 -97206127 + L1MC4a LINE L1 5918 7081 -801 5 1061 847 213 192 31 chr3 62393838 62394187 -97205596 + RLTR9E LTR ERVK 5 409 0 5 1061 330 306 32 0 chr3 62394299 62394423 -97205360 + L1MC4a LINE L1 7755 7882 0 5 1061 22 35 0 0 chr3 62394691 62394720 -97205063 + AT_rich Low_complexity Low_complexity 1 29 0 5 1061 21 36 0 0 chr3 62395519 62395547 -97204236 + AT_rich Low_complexity Low_complexity 1 28 0 5 1061 193 119 48 0 chr3 62395585 62395627 -97204156 + CT-rich Low_complexity Low_complexity 2 45 0 5 1061 25 75 0 0 chr3 62395957 62396010 -97203773 + AT_rich Low_complexity Low_complexity 1 53 0 5 1061 1008 92 43 0 chr3 62396747 62396888 -97202895 - B1_Mus1 SINE Alu 0 148 2 5 1061 761 329 108 62 chr3 62397137 62397506 -97202277 - MTD LTR MaLR -14 386 1 5 1061 222 191 0 0 chr3 62397564 62397611 -97202172 + (CA)n Simple_repeat Simple_repeat 2 48 0 5 1061 26 0 0 0 chr3 62397889 62397915 -97201868 + AT_rich Low_complexity Low_complexity 1 26 0 5 1061 2306 59 3 16 chr3 62400779 62401088 -97198695 - L1Md_F2 LINE L1 -12 6570 6266 5 1061 2147 51 4 7 chr3 62402059 62402338 -97197445 + L1Md_F2 LINE L1 6303 6580 -2 5 1061 1167 61 0 0 chr3 62402539 62402686 -97197097 + B1_Mm SINE Alu 1 147 0 5 1061 307 79 48 0 chr3 62402686 62402749 -97197034 + (CAAAA)n Simple_repeat Simple_repeat 5 70 0 5 1061 399 113 0 0 chr3 62402829 62402891 -97196892 + (GA)n Simple_repeat Simple_repeat 1 62 0 5 1061 591 256 106 25 chr3 62402891 62403127 -97196656 + Lx8 LINE L1 7214 7468 -5 5 1061 378 0 0 0 chr3 62403367 62403409 -97196374 + (CA)n Simple_repeat Simple_repeat 1 42 0 5 1061 4541 46 0 0 chr3 62404033 62404576 -97195207 + L1Md_F2 LINE L1 6032 6574 -8 5 1061 232 91 45 0 chr3 62404981 62405025 -97194758 + (GA)n Simple_repeat Simple_repeat 2 47 0 5 1061 258 230 13 39 chr3 62405083 62405160 -97194623 + (CATA)n Simple_repeat Simple_repeat 1 75 0 5 1061 37 39 0 0 chr3 62405177 62405228 -97194555 + AT_rich Low_complexity Low_complexity 1 51 0 5 1061 21 0 0 0 chr3 62405359 62405380 -97194403 + AT_rich Low_complexity Low_complexity 1 21 0 5 1061 375 105 0 0 chr3 62405933 62405990 -97193793 + (TA)n Simple_repeat Simple_repeat 1 57 0 5 1061 513 0 0 0 chr3 62408950 62409007 -97190776 + (GA)n Simple_repeat Simple_repeat 1 57 0 5 1061 717 258 216 20 chr3 62409340 62409376 -97190407 - RMER15 LTR ERVL 0 575 542 5 1061 477 0 0 0 chr3 62409376 62409429 -97190354 + (CA)n Simple_repeat Simple_repeat 2 54 0 5 1061 717 279 363 24 chr3 62409429 62409818 -97189965 - RMER15 LTR ERVL -34 541 13 5 1061 927 207 53 66 chr3 62409851 62410094 -97189689 - RMER15-int LTR ERVL -118 4881 4642 5 1061 1388 287 91 14 chr3 62410113 62410541 -97189242 - RMER15-int LTR ERVL -430 4569 4109 5 1061 23 68 0 0 chr3 62410556 62410600 -97189183 + AT_rich Low_complexity Low_complexity 1 44 0 5 1061 926 262 173 9 chr3 62410600 62410946 -97188837 - Lx8 LINE L1 -5 7468 7066 5 1061 429 229 54 18 chr3 62410987 62411098 -97188685 - Lx8 LINE L1 -509 6964 6850 5 1061 664 311 32 60 chr3 62411167 62411451 -97188332 - RMER15-int LTR ERVL -895 4104 3829 5 1061 1501 254 88 30 chr3 62411534 62412168 -97187615 - RMER15-int LTR ERVL -2246 2753 2083 5 1061 369 0 0 0 chr3 62412292 62412333 -97187450 + (CA)n Simple_repeat Simple_repeat 2 42 0 5 1061 462 288 81 63 chr3 62412367 62412541 -97187242 - B3 SINE B2 -3 213 37 6 1061 246 32 0 0 chr3 62412551 62412582 -97187201 + (CAAAA)n Simple_repeat Simple_repeat 4 34 0 6 1061 638 214 6 14 chr3 62412648 62412971 -97186812 + CT-rich Low_complexity Low_complexity 1 320 0 6 1061 308 331 34 20 chr3 62413206 62413354 -97186429 - RMER15-int LTR ERVL -4816 183 34 5 1061 1054 282 41 82 chr3 62413378 62413883 -97185900 - RMER15 LTR ERVL 0 575 1 5 1061 456 286 133 22 chr3 62413952 62414320 -97185463 + L1MA6 LINE L1 5892 6300 0 6 1061 1059 244 20 7 chr3 62415999 62416300 -97183483 - L1_Mur3 LINE L1 -6532 1180 876 6 1061 22 0 0 0 chr3 62416845 62416867 -97182916 + AT_rich Low_complexity Low_complexity 1 22 0 6 1061 503 331 40 11 chr3 62417003 62417180 -97182603 - B3A SINE B2 -15 183 2 6 1061 216 190 32 78 chr3 62417380 62417534 -97182249 + (TATAA)n Simple_repeat Simple_repeat 5 151 0 6 1061 541 216 14 0 chr3 62417937 62418076 -97181707 + (TA)n Simple_repeat Simple_repeat 1 141 0 6 1061 279 309 92 33 chr3 62418216 62418400 -97181383 - B3A SINE B2 -1 197 3 6 1061 421 271 54 48 chr3 62418449 62418596 -97181187 - RSINE1 SINE B4 -17 148 1 6 1061 860 212 63 5 chr3 62418633 62418823 -97180960 - B3 SINE B2 -14 202 2 6 1061 896 341 78 8 chr3 62419125 62419613 -97180170 + MT2A LTR ERVL 1 522 -11 6 1061 198 0 0 0 chr3 62420327 62420349 -97179434 + (TTTG)n Simple_repeat Simple_repeat 3 24 0 6 1061 348 196 58 67 chr3 62420404 62420508 -97179275 - RMER5 LTR ERV1 -111 423 321 6 1061 477 219 44 0 chr3 62420506 62420620 -97179163 + RMER5 LTR ERV1 237 355 -179 6 1061 1643 152 117 19 chr3 62420597 62420913 -97178870 - RLTR26 LTR ERVK -295 347 1 6 1061 27 62 0 0 chr3 62421038 62421086 -97178697 + AT_rich Low_complexity Low_complexity 1 48 0 6 1061 266 266 151 6 chr3 62422359 62422518 -97177265 + L1M3 LINE L1 2426 2607 -3533 6 1061 479 319 45 32 chr3 62422610 62422924 -97176859 + L1M3 LINE L1 3635 3952 -2188 6 1061 444 19 0 0 chr3 62422930 62422983 -97176800 + (CA)n Simple_repeat Simple_repeat 1 53 0 6 1061 469 253 130 13 chr3 62423032 62423333 -97176450 + L1M3 LINE L1 4095 4430 -1710 6 1061 311 298 40 0 chr3 62423471 62423595 -97176188 + L1M3 LINE L1 4463 4591 -1555 6 1061 298 298 59 63 chr3 62423670 62423892 -97175891 + L1M3 LINE L1 4716 4936 -1210 6 1061 292 385 28 0 chr3 62423934 62424043 -97175740 + PB1D10 SINE Alu 1 112 -5 6 1061 180 0 0 0 chr3 62424167 62424187 -97175596 + (TTTTC)n Simple_repeat Simple_repeat 2 21 0 6 1061 231 229 14 0 chr3 62424235 62424305 -97175478 + (TA)n Simple_repeat Simple_repeat 2 72 0 6 1061 325 264 8 39 chr3 62424364 62424494 -97175289 + L1M3 LINE L1 5312 5437 -747 6 1061 784 263 118 3 chr3 62424516 62424896 -97174887 + L1M4 LINE L1 5368 5789 -389 6 1061 32 67 0 32 chr3 62424975 62425040 -97174743 + AT_rich Low_complexity Low_complexity 1 64 0 6 1061 864 77 0 0 chr3 62425040 62425157 -97174626 + (TTTC)n Simple_repeat Simple_repeat 2 118 0 6 1061 1065 67 7 0 chr3 62425157 62425292 -97174491 - B1_Mus2 SINE Alu -10 137 2 6 1061 32 67 0 32 chr3 62425292 62425318 -97174465 + AT_rich Low_complexity Low_complexity 1 25 0 6 1061 264 122 0 0 chr3 62425521 62425562 -97174221 + (TCC)n Simple_repeat Simple_repeat 3 43 0 6 1061 385 284 0 0 chr3 62425819 62425900 -97173883 + ID4 SINE ID 1 81 -2 6 1061 22 0 0 0 chr3 62425908 62425930 -97173853 + AT_rich Low_complexity Low_complexity 1 22 0 6 1061 271 342 54 0 chr3 62426008 62426119 -97173664 + PB1D7 SINE Alu 2 118 -2 6 1061 12421 76 25 29 chr3 62426227 62426902 -97172881 - L1VL4 LINE L1 -799 2760 2098 6 1061 207 0 0 0 chr3 62426902 62426925 -97172858 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 6 1061 12421 79 17 20 chr3 62426925 62428793 -97170990 - L1VL4 LINE L1 -1462 2097 226 6 1061 578 287 22 54 chr3 62428795 62428979 -97170804 + MTEb LTR MaLR 3 180 -199 6 1061 789 312 71 35 chr3 62428994 62429475 -97170308 - L1_Mur3 LINE L1 -1492 4388 3891 6 1061 594 286 61 0 chr3 62429492 62429639 -97170144 + MTEb LTR MaLR 60 215 -164 6 1061 308 255 14 62 chr3 62429784 62429930 -97169853 - L1M2 LINE L1 -2962 3181 3043 6 1061 737 330 72 18 chr3 62430163 62430441 -97169342 - LTR40a LTR ERVL -222 297 5 6 1061 855 255 15 5 chr3 62431339 62431540 -97168243 + B3 SINE B2 2 204 -12 6 1061 254 62 0 0 chr3 62432432 62432464 -97167319 - B2_Mm2 SINE B2 -149 46 15 6 1061 2408 38 0 3 chr3 62432464 62432756 -97167027 + L1Md_F3 LINE L1 6293 6583 -1 6 1061 349 329 58 7 chr3 62432942 62433080 -97166703 + Lx8 LINE L1 6169 6313 -1160 6 1061 200 31 62 0 chr3 62433114 62433146 -97166637 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 6 1061 1186 61 0 0 chr3 62433148 62433295 -97166488 + B1_Mm SINE Alu 1 147 0 6 1061 214 186 0 0 chr3 62433295 62433338 -97166445 + (TAAA)n Simple_repeat Simple_repeat 4 46 0 6 1061 785 281 44 4 chr3 62433377 62433606 -97166177 + Lx5 LINE L1 6301 6538 -512 6 1061 1475 279 17 0 chr3 62433610 62433954 -97165829 + Lx5 LINE L1 6701 7050 0 6 1061 300 373 33 17 chr3 62434053 62434173 -97165610 - B1F1 SINE Alu -19 130 9 6 1061 767 319 13 71 chr3 62435098 62435408 -97164375 - B4A SINE B4 0 292 1 6 1061 225 217 100 0 chr3 62435773 62435833 -97163950 - MLT1L LTR MaLR -391 219 154 6 1061 736 191 16 70 chr3 62436209 62436371 -97163412 + B3A SINE B2 3 143 -55 6 1061 438 53 0 0 chr3 62436371 62436428 -97163355 + (TG)n Simple_repeat Simple_repeat 1 57 0 6 1061 355 231 45 169 chr3 62436428 62436442 -97163341 + B2_Mm2 SINE B2 140 157 -38 6 1061 329 350 36 21 chr3 62436442 62436568 -97163215 - RSINE1 SINE B4 -23 142 1 6 1061 22 0 0 0 chr3 62436580 62436602 -97163181 + AT_rich Low_complexity Low_complexity 1 22 0 6 1061 30 27 0 0 chr3 62436773 62436810 -97162973 + AT_rich Low_complexity Low_complexity 1 37 0 6 1061 1295 87 0 26 chr3 62436943 62437133 -97162650 + B2_Mm2 SINE B2 1 185 -10 6 1061 21 0 0 0 chr3 62437184 62437205 -97162578 + AT_rich Low_complexity Low_complexity 1 21 0 6 1061 342 278 157 45 chr3 62437288 62437637 -97162146 - MLT1D LTR MaLR -27 440 16 6 1061 1224 103 45 40 chr3 62437864 62438086 -97161697 - Lx LINE L1 -11 6643 6421 6 1061 25367 154 21 11 chr3 62438086 62439589 -97160194 - L1VL2 LINE L1 -38 5845 4303 6 1061 3443 30 0 0 chr3 62439589 62439985 -97159798 + MTA_Mm LTR MaLR 1 396 0 6 1061 25367 154 21 11 chr3 62439985 62442605 -97157178 - L1VL2 LINE L1 -1581 4302 1672 6 1061 1839 110 32 48 chr3 62442605 62442919 -97156864 + RLTR27 LTR ERVK 1 309 0 6 1061 25367 127 19 6 chr3 62442919 62443888 -97155895 - L1VL2 LINE L1 -4212 1671 695 6 1061 324 92 25 38 chr3 62443882 62443961 -97155822 - Lx9 LINE L1 -79 7565 7488 6 1061 970 286 101 11 chr3 62443983 62444428 -97155355 - Lx9 LINE L1 -17 7627 7143 6 1061 249 33 0 0 chr3 62444444 62444474 -97155309 + (TTA)n Simple_repeat Simple_repeat 3 32 0 6 1061 590 189 80 13 chr3 62444475 62444625 -97155158 - Lx3C LINE L1 -2 6974 6815 6 1061 2534 128 25 2 chr3 62444605 62445012 -97154771 + Lx3B LINE L1 6438 6853 -120 6 1061 307 294 10 0 chr3 62445009 62445111 -97154672 - Lx9 LINE L1 -490 7154 7052 6 1061 343 319 22 0 chr3 62445140 62445275 -97154508 - Lx9 LINE L1 -659 6985 6848 6 1061 223 385 82 20 chr3 62445758 62445856 -97153927 + L2c LINE L2 3036 3139 -248 6 1061 657 308 110 36 chr3 62446141 62446422 -97153361 + MLT1F2 LTR MaLR 2 397 -257 6 1061 465 340 31 19 chr3 62446551 62446710 -97153073 - B3A SINE B2 -37 161 1 6 1061 23 33 0 0 chr3 62446839 62446869 -97152914 + AT_rich Low_complexity Low_complexity 1 30 0 6 1061 340 154 15 0 chr3 62448088 62448153 -97151630 + B1_Mus2 SINE Alu 82 147 0 6 1061 555 237 28 14 chr3 62448461 62448602 -97151181 + B1_Mur1 SINE Alu 7 149 0 6 1061 363 148 11 22 chr3 62448619 62448709 -97151074 + GA-rich Low_complexity Low_complexity 3 91 0 6 1061 543 43 0 0 chr3 62449138 62449208 -97150575 + (TG)n Simple_repeat Simple_repeat 2 71 0 6 1061 28 29 0 0 chr3 62449279 62449314 -97150469 + AT_rich Low_complexity Low_complexity 1 35 0 6 1061 7679 42 6 18 chr3 62449694 62451391 -97148392 - L1Md_F3 LINE L1 -14 6570 4906 6 1061 1555 198 68 26 chr3 62452689 62453041 -97146742 - ORR1B2 LTR MaLR 0 367 1 6 1061 24 32 0 0 chr3 62453591 62453622 -97146161 + AT_rich Low_complexity Low_complexity 1 31 0 6 1061 357 284 69 0 chr3 62453634 62453736 -97146047 + PB1 SINE Alu 1 109 -18 6 1061 23 0 0 0 chr3 62454448 62454471 -97145312 + AT_rich Low_complexity Low_complexity 1 23 0 6 1061 245 339 55 31 chr3 62454471 62454599 -97145184 + L2a LINE L2 3081 3211 -215 6 1061 1958 129 46 88 chr3 62455106 62455197 -97144586 + RLTR15 LTR ERVK 1 62 -297 6 1061 4352 35 4 0 chr3 62455197 62455710 -97144073 + L1Md_T LINE L1 6068 6582 0 6 1061 1958 129 46 88 chr3 62455710 62455991 -97143792 + RLTR15 LTR ERVK 63 357 -2 6 1061 182 336 189 9 chr3 62456121 62456232 -97143551 + L2 LINE L2 2878 3008 -411 6 1061 209 0 97 0 chr3 62456572 62456603 -97143180 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 6 1061 193 312 37 12 chr3 62456917 62456998 -97142785 - MER5A DNA MER1_type -104 85 3 6 1061 32 43 0 0 chr3 62457906 62457952 -97141831 + AT_rich Low_complexity Low_complexity 1 46 0 6 1061 197 33 33 0 chr3 62457986 62458016 -97141767 + (TA)n Simple_repeat Simple_repeat 1 31 0 6 1061 248 239 0 66 chr3 62459407 62459440 -97140343 + polypyrimidine Low_complexity Low_complexity 40 72 0 6 1061 534 31 0 0 chr3 62459440 62459504 -97140279 + (TTCC)n Simple_repeat Simple_repeat 1 64 0 6 1061 248 239 0 66 chr3 62459504 62459546 -97140237 + polypyrimidine Low_complexity Low_complexity 2 39 0 6 1061 6875 118 37 22 chr3 62459550 62460653 -97139130 - Lx3B LINE L1 -4 6969 5850 6 1061 819 86 0 136 chr3 62460656 62460818 -97138965 + L1_Mur1 LINE L1 5029 5168 -718 6 1061 7541 102 12 43 chr3 62460822 62462125 -97137658 - L1_Mur1 LINE L1 -40 5846 4584 6 1061 185 0 40 0 chr3 62462852 62462877 -97136906 + (TTTA)n Simple_repeat Simple_repeat 1 26 0 6 1061 1041 176 18 27 chr3 62462877 62463099 -97136684 - Lx3A LINE L1 -14 6967 6748 6 1061 238 209 30 0 chr3 62463233 62463300 -97136483 - L1MEg LINE L1 -4759 1325 1257 6 1061 405 0 0 0 chr3 62463343 62463388 -97136395 + (CA)n Simple_repeat Simple_repeat 1 45 0 6 1061 359 296 116 34 chr3 62463635 62463782 -97136001 - RLTR14 LTR ERV1 0 382 224 6 1061 4068 235 124 23 chr3 62464294 62464580 -97135203 - Lx9 LINE L1 -11 7633 7324 7 1061 3029 76 10 2 chr3 62464580 62464977 -97134806 + MTB LTR MaLR 1 400 0 7 1061 4068 235 124 23 chr3 62464977 62465298 -97134485 - Lx9 LINE L1 -321 7323 6982 7 1061 378 0 0 0 chr3 62465298 62465340 -97134443 + (TTG)n Simple_repeat Simple_repeat 1 42 0 7 1061 4068 235 124 23 chr3 62465340 62465937 -97133846 - Lx9 LINE L1 -663 6981 6307 7 1061 1907 154 72 32 chr3 62466100 62466462 -97133321 + ORR1C1 LTR MaLR 6 376 -2 7 1061 237 306 204 0 chr3 62466674 62466782 -97133001 + Charlie4a DNA MER1_type 17 146 -362 7 1061 248 259 154 35 chr3 62466802 62467058 -97132725 + Charlie4a DNA MER1_type 209 501 -7 7 1061 516 318 56 61 chr3 62467074 62467416 -97132367 - L2 LINE L2 -1814 1605 1266 7 1061 259 286 10 20 chr3 62467819 62467919 -97131864 + CT-rich Low_complexity Low_complexity 2 100 0 7 1061 1468 165 197 7 chr3 62468728 62469033 -97130750 + ORR1C1 LTR MaLR 3 365 -13 7 1061 233 256 153 46 chr3 62469131 62469262 -97130521 - L2a LINE L2 -4 3422 3278 7 1061 271 74 36 18 chr3 62469262 62469317 -97130466 + (CAAAA)n Simple_repeat Simple_repeat 5 60 0 7 1061 425 233 84 25 chr3 62470125 62470244 -97129539 - MLT1A1 LTR MaLR -279 129 4 7 1061 35 0 0 0 chr3 62471484 62471519 -97128264 + AT_rich Low_complexity Low_complexity 1 35 0 7 1061 333 100 0 0 chr3 62472053 62472103 -97127680 + (TCC)n Simple_repeat Simple_repeat 3 52 0 7 1061 483 18 0 0 chr3 62472103 62472159 -97127624 + (TC)n Simple_repeat Simple_repeat 1 56 0 7 1061 198 0 0 0 chr3 62472159 62472180 -97127603 + (CA)n Simple_repeat Simple_repeat 1 22 0 7 1061 831 164 36 0 chr3 62472518 62472658 -97127125 + B1_Mus2 SINE Alu 2 146 -1 7 1061 221 140 0 23 chr3 62472658 62472702 -97127081 + (TAA)n Simple_repeat Simple_repeat 1 43 0 7 1061 203 363 78 43 chr3 62473225 62473366 -97126417 + MIRm SINE MIR 4 149 -127 7 1061 1418 267 48 86 chr3 62473560 62474218 -97125565 + RLTR18B LTR ERVK 25 512 0 7 1061 1171 190 42 42 chr3 62474537 62474682 -97125101 - Lx7 LINE L1 -2 7694 7551 7 1061 197 33 0 32 chr3 62474682 62474713 -97125070 + (TAA)n Simple_repeat Simple_repeat 3 32 0 7 1061 1171 190 42 42 chr3 62474713 62474880 -97124903 - Lx7 LINE L1 -146 7550 7384 7 1061 576 29 0 0 chr3 62474915 62474985 -97124798 + (CA)n Simple_repeat Simple_repeat 1 70 0 7 1061 24 32 0 0 chr3 62475008 62475039 -97124744 + AT_rich Low_complexity Low_complexity 1 31 0 7 1061 488 271 0 0 chr3 62475056 62475178 -97124605 - Lx7 LINE L1 -354 7342 7221 7 1061 2818 181 28 28 chr3 62475165 62475853 -97123930 - L1_Mur3 LINE L1 -556 5324 4637 7 1061 267 103 0 0 chr3 62475854 62475893 -97123890 + (TG)n Simple_repeat Simple_repeat 2 40 0 7 1061 4713 214 56 43 chr3 62475896 62478063 -97121720 - L1_Mur3 LINE L1 -4111 1769 17 7 1061 204 364 101 28 chr3 62478089 62478267 -97121516 + L2 LINE L2 2749 2939 -480 7 1061 2303 258 211 14 chr3 62478962 62479768 -97120015 - RMER1A Other Other -11 1019 55 7 1061 1026 298 78 3 chr3 62479775 62480068 -97119715 - RMER1A Other Other -571 459 145 7 1061 837 93 8 8 chr3 62480140 62480259 -97119524 - B1_Mus1 SINE Alu -1 147 29 7 1061 538 286 58 68 chr3 62480570 62480630 -97119153 + RMER15 LTR ERVL 296 355 -220 7 1061 1929 186 34 13 chr3 62480630 62481016 -97118767 + ORR1B1 LTR MaLR 1 394 0 7 1061 538 286 58 68 chr3 62481016 62481146 -97118637 + RMER15 LTR ERVL 356 484 -91 7 1061 504 211 23 68 chr3 62481177 62481309 -97118474 + MLT1A0 LTR MaLR 240 365 0 7 1061 35 0 0 0 chr3 62481422 62481457 -97118326 + AT_rich Low_complexity Low_complexity 1 35 0 7 1061 726 246 56 5 chr3 62481461 62481657 -97118126 - Lx5 LINE L1 -7 7043 6838 7 1061 1505 218 123 81 chr3 62481660 62482340 -97117443 - RMER17B LTR ERVK -11 947 300 7 1061 3798 60 0 0 chr3 62482340 62483034 -97116749 - L1Md_F2 LINE L1 -504 6078 5385 7 1061 3685 59 0 29 chr3 62483034 62483520 -97116263 + L1Md_F2 LINE L1 6095 6566 -16 7 1061 1636 176 33 21 chr3 62483523 62483854 -97115929 - RMER17B LTR ERVK -623 335 1 7 1061 1467 206 7 0 chr3 62483861 62484142 -97115641 - Lx5 LINE L1 -243 6807 6525 7 1061 1153 201 5 5 chr3 62485175 62485375 -97114408 - MTC LTR MaLR 0 421 222 7 1061 1658 224 59 45 chr3 62485359 62485601 -97114182 - ORR1C1-int LTR MaLR -1076 433 181 7 1061 6267 127 23 17 chr3 62485601 62486616 -97113167 - RLTR13D5 LTR ERVK 0 1023 3 7 1061 1658 224 59 45 chr3 62486616 62486799 -97112984 - ORR1C1-int LTR MaLR -1329 180 2 7 1061 1802 174 25 91 chr3 62486800 62487205 -97112578 - ORR1C1 LTR MaLR 0 378 1 7 1061 426 20 0 0 chr3 62487889 62487940 -97111843 + (TG)n Simple_repeat Simple_repeat 1 51 0 7 1061 524 93 16 25 chr3 62487940 62488061 -97111722 + (CAGAGA)n Simple_repeat Simple_repeat 4 123 0 7 1061 186 133 0 0 chr3 62488071 62488101 -97111682 + (TATG)n Simple_repeat Simple_repeat 1 30 0 7 1061 265 329 0 0 chr3 62488105 62488175 -97111608 - B4 SINE B4 -2 290 221 7 1061 367 297 40 0 chr3 62488264 62488365 -97111418 - PB1D10 SINE Alu -1 116 12 7 1061 1272 228 129 27 chr3 62488534 62488659 -97111124 - ORR1D1 LTR MaLR 0 374 252 7 1061 210 37 0 0 chr3 62488659 62488686 -97111097 + (CAGG)n Simple_repeat Simple_repeat 4 30 0 7 1061 1272 228 129 27 chr3 62488686 62488741 -97111042 - ORR1D1 LTR MaLR -123 251 172 7 1061 513 0 0 0 chr3 62488741 62488798 -97110985 + (TAGA)n Simple_repeat Simple_repeat 4 60 0 7 1061 1272 228 129 27 chr3 62488798 62488950 -97110833 - ORR1D1 LTR MaLR -203 171 9 7 1061 1097 311 46 20 chr3 62489077 62489471 -97110312 + Lx8 LINE L1 6881 7284 -189 7 1061 21 36 0 0 chr3 62489688 62489716 -97110067 + AT_rich Low_complexity Low_complexity 1 28 0 7 1061 717 182 95 0 chr3 62489852 62489989 -97109794 - B1_Mur4 SINE Alu 0 150 1 7 1061 1327 232 122 22 chr3 62490752 62491114 -97108669 + MTD LTR MaLR 20 417 -2 7 1061 227 191 0 0 chr3 62491582 62491624 -97108159 - MIR SINE MIR -108 154 113 7 1061 575 39 13 0 chr3 62493026 62493104 -97106679 + (GA)n Simple_repeat Simple_repeat 2 80 0 7 1061 7774 77 24 3 chr3 62493881 62494410 -97105373 + L1_Mur1 LINE L1 4203 4737 -1149 7 1061 204 40 0 0 chr3 62494410 62494435 -97105348 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 7 1061 7774 77 24 3 chr3 62494435 62495066 -97104717 + L1_Mur1 LINE L1 4738 5387 -499 7 1061 978 107 101 0 chr3 62495068 62495237 -97104546 + Lx3_Mus LINE L1 6816 7001 -8 7 1061 26 82 0 0 chr3 62495316 62495377 -97104406 + AT_rich Low_complexity Low_complexity 1 61 0 7 1061 559 301 7 50 chr3 62495449 62495589 -97104194 + RSINE1 SINE B4 3 136 -29 7 1061 251 309 177 14 chr3 62495802 62495943 -97103840 - RSINE1 SINE B4 0 165 2 7 1061 7159 75 3 12 chr3 62495960 62497081 -97102702 - L1Md_F2 LINE L1 -4 6578 5469 7 1061 20740 85 7 5 chr3 62497083 62500000 -97099783 + IAPEz-int LTR ERVK 898 3822 -2659 7 1061 13088 45 13 0 chr3 62500000 62501582 -97098201 + IAPEz-int LTR ERVK 3823 5424 -1057 1 1061 4521 92 30 23 chr3 62501580 62502244 -97097539 + IAPEz-int LTR ERVK 5813 6481 0 1 1061 2117 102 6 9 chr3 62502244 62502561 -97097222 + IAPLTR2b LTR ERVK 1 316 -11 1 1061 241 82 20 20 chr3 62502762 62502812 -97096971 + (TTTTG)n Simple_repeat Simple_repeat 2 51 0 2 1061 2877 262 50 23 chr3 62502868 62503767 -97096016 - Lx9 LINE L1 -88 7556 6634 3 1061 642 252 72 24 chr3 62503771 62503978 -97095805 - ID_B1 SINE B4 -7 217 1 4 1061 1509 251 70 12 chr3 62504252 62504687 -97095096 - Lx2B LINE L1 -57 6943 6183 5 1061 22 35 0 0 chr3 62504705 62504734 -97095049 + AT_rich Low_complexity Low_complexity 1 29 0 6 1061 225 319 162 27 chr3 62505261 62505409 -97094374 + LTR41 LTR ERVL 479 646 -122 7 1061 441 36 0 0 chr3 62505585 62505640 -97094143 + (GGAGA)n Simple_repeat Simple_repeat 4 58 0 8 1061 303 28 0 0 chr3 62506126 62506162 -97093621 + (TG)n Simple_repeat Simple_repeat 1 36 0 9 1061 472 300 15 37 chr3 62506189 62506227 -97093556 - B3A SINE B2 -62 136 101 1 1061 3934 36 0 2 chr3 62506227 62506700 -97093083 + L1Md_F2 LINE L1 6097 6568 -14 1 1061 472 300 15 37 chr3 62506700 62506796 -97092987 - B3A SINE B2 -98 100 5 1 1061 27 29 0 0 chr3 62507338 62507372 -97092411 + AT_rich Low_complexity Low_complexity 1 34 0 1 1061 21 0 0 0 chr3 62508613 62508634 -97091149 + AT_rich Low_complexity Low_complexity 1 21 0 1 1061 404 37 19 0 chr3 62508695 62508749 -97091034 + (TTTA)n Simple_repeat Simple_repeat 2 56 0 1 1061 1355 304 10 25 chr3 62508760 62509165 -97090618 - Lx5 LINE L1 -17 7033 6635 1 1061 226 241 190 0 chr3 62509173 62509252 -97090531 + Lx6 LINE L1 6630 6723 -737 1 1061 348 335 12 12 chr3 62509658 62509821 -97089962 + CT-rich Low_complexity Low_complexity 2 164 0 1 1061 337 254 127 0 chr3 62510035 62510169 -97089614 - L1MA4 LINE L1 -382 5918 5768 1 1061 1181 291 62 123 chr3 62510198 62510484 -97089299 - L1_Rod LINE L1 -1516 4364 4065 1 1061 450 0 0 0 chr3 62510484 62510534 -97089249 + (TTTTG)n Simple_repeat Simple_repeat 1 50 0 2 1061 591 66 0 5 chr3 62510534 62510617 -97089166 - B1_Mus2 SINE Alu -13 134 29 2 1061 1181 291 62 123 chr3 62510617 62511285 -97088498 - L1_Rod LINE L1 -1816 4064 3391 1 1061 569 294 109 28 chr3 62511365 62512166 -97087617 - L1_Rod LINE L1 -4041 1806 930 1 1061 841 303 114 107 chr3 62512242 62512488 -97087295 + RLTR40 LTR ERVK 1 286 -531 2 1061 330 67 0 0 chr3 62512488 62512533 -97087250 + (TG)n Simple_repeat Simple_repeat 2 46 0 2 1061 841 303 114 107 chr3 62512533 62512720 -97087063 + RLTR40 LTR ERVK 287 445 -372 2 1061 2540 97 23 0 chr3 62512720 62513071 -97086712 - L1_Mus2 LINE L1 0 6566 6208 2 1061 841 303 114 107 chr3 62513071 62513243 -97086540 + RLTR40 LTR ERVK 446 610 -207 2 1061 324 134 36 12 chr3 62513740 62513823 -97085960 + A-rich Low_complexity Low_complexity 4 88 0 2 1061 245 146 0 20 chr3 62515610 62515659 -97084124 + (TTA)n Simple_repeat Simple_repeat 1 48 0 2 1061 243 164 0 0 chr3 62515665 62515726 -97084057 + (TG)n Simple_repeat Simple_repeat 2 62 0 2 1061 2224 56 3 0 chr3 62516386 62516671 -97083112 - L1Md_A LINE L1 -7 6575 6290 2 1061 615 338 23 36 chr3 62517295 62517516 -97082267 + B4A SINE B4 1 218 -74 2 1061 416 91 15 0 chr3 62517572 62517638 -97082145 + (CA)n Simple_repeat Simple_repeat 1 67 0 3 1061 307 318 24 0 chr3 62520713 62520798 -97078985 - ID_B1 SINE B4 -4 220 134 3 1062 203 175 0 0 chr3 62521905 62521945 -97077838 + T-rich Low_complexity Low_complexity 1 40 0 3 1062 905 226 51 0 chr3 62522842 62523037 -97076746 + B3 SINE B2 12 216 0 3 1062 409 343 254 18 chr3 62523106 62523329 -97076454 - LTR33 LTR ERVL -105 410 113 3 1062 1810 186 51 19 chr3 62523329 62523701 -97076082 + ORR1C2 LTR MaLR 1 384 0 3 1062 409 343 254 18 chr3 62523701 62523804 -97075979 - LTR33 LTR ERVL -403 112 7 3 1062 254 338 0 14 chr3 62525551 62525620 -97074163 - ID4_ SINE ID -5 78 11 3 1062 189 82 20 39 chr3 62525734 62525785 -97073998 + (TTTTG)n Simple_repeat Simple_repeat 1 50 0 3 1062 1169 68 0 0 chr3 62525785 62525932 -97073851 - B1_Mm SINE Alu 0 147 1 3 1062 25 51 0 0 chr3 62526480 62526519 -97073264 + AT_rich Low_complexity Low_complexity 1 39 0 3 1062 269 119 34 0 chr3 62527907 62527966 -97071817 + (CAGAGA)n Simple_repeat Simple_repeat 1 61 0 4 1062 3242 42 3 0 chr3 62528401 62528785 -97070998 + IAPEY_LTR LTR ERVK 1 385 0 4 1062 929 247 65 28 chr3 62528785 62529118 -97070665 - ORR1D1 LTR MaLR -1 377 38 4 1062 614 260 0 33 chr3 62529517 62529668 -97070115 + B1_Mur1 SINE Alu 3 148 -1 4 1062 24 53 0 0 chr3 62530698 62530736 -97069047 + AT_rich Low_complexity Low_complexity 1 38 0 4 1062 446 0 19 0 chr3 62531024 62531078 -97068705 + (TG)n Simple_repeat Simple_repeat 1 55 0 4 1062 414 0 0 0 chr3 62531078 62531123 -97068660 + (GA)n Simple_repeat Simple_repeat 1 46 0 4 1062 624 338 98 57 chr3 62531748 62532027 -97067756 + Kanga1a DNA Tc2 57 350 -404 4 1062 243 61 0 0 chr3 62532027 62532060 -97067723 + (CAA)n Simple_repeat Simple_repeat 2 34 0 4 1062 624 338 98 57 chr3 62532060 62532320 -97067463 + Kanga1a DNA Tc2 351 617 -137 4 1062 491 292 0 0 chr3 62532418 62532531 -97067252 + PB1D7 SINE Alu 6 118 -2 4 1062 22 80 0 0 chr3 62532964 62533014 -97066769 + AT_rich Low_complexity Low_complexity 1 50 0 5 1062 245 330 37 19 chr3 62533738 62533846 -97065937 - MER34 LTR ERV1 -87 455 346 5 1062 21 0 0 0 chr3 62534199 62534220 -97065563 + AT_rich Low_complexity Low_complexity 1 21 0 5 1062 1433 224 40 9 chr3 62535969 62536294 -97063489 + Lx5 LINE L1 6716 7050 0 5 1062 1886 90 7 18 chr3 62536780 62537064 -97062719 + Lx LINE L1 6373 6653 -1 5 1062 1956 166 125 5 chr3 62538071 62538447 -97061336 + MTC LTR MaLR 1 421 0 5 1062 2154 151 18 34 chr3 62538619 62539003 -97060780 - ORR1C1 LTR MaLR 0 378 1 5 1062 496 273 304 13 chr3 62539443 62539685 -97060098 - MLT1A LTR MaLR -18 356 45 5 1062 37975 30 0 1 chr3 62540184 62546827 -97052956 - L1Md_T LINE L1 -1 6584 1 5 1062 1269 317 83 50 chr3 62546833 62547916 -97051867 - L1MC4a LINE L1 -19 7863 6745 5 1062 7737 72 7 2 chr3 62548363 62549692 -97050091 - L1_Mus1 LINE L1 0 6654 5243 6 1062 22 56 0 0 chr3 62550562 62550598 -97049185 + AT_rich Low_complexity Low_complexity 1 36 0 6 1062 6471 212 40 37 chr3 62550762 62552723 -97047060 + Lx6 LINE L1 5175 7122 -338 6 1062 399 17 0 48 chr3 62552723 62552786 -97046997 + (CA)n Simple_repeat Simple_repeat 1 60 0 6 1062 6471 230 47 55 chr3 62552786 62552927 -97046856 + Lx6 LINE L1 7123 7277 -183 6 1062 243 0 0 0 chr3 62552931 62552958 -97046825 + (TGAA)n Simple_repeat Simple_repeat 3 29 0 6 1062 246 350 20 20 chr3 62553016 62553118 -97046665 + Lx7 LINE L1 7207 7308 -388 6 1062 432 37 0 0 chr3 62553162 62553216 -97046567 + (TG)n Simple_repeat Simple_repeat 1 54 0 6 1062 520 296 58 13 chr3 62553822 62553976 -97045807 + MTE2a LTR MaLR 42 202 -177 6 1062 301 248 204 11 chr3 62554583 62554829 -97044954 - MER33 DNA MER1_type -37 287 19 6 1062 35229 70 2 24 chr3 62555364 62561601 -97038182 - L1Md_F2 LINE L1 -1 6581 484 6 1062 4582 107 8 17 chr3 62562952 62563656 -97036127 + L1_Mus3 LINE L1 5933 6630 -8 7 1062 264 368 0 86 chr3 62563680 62563808 -97035975 - MLT1D LTR MaLR -388 117 1 7 1062 263 240 39 29 chr3 62564143 62564246 -97035537 + Tigger10 DNA Tigger 1544 1647 -196 7 1062 948 206 52 33 chr3 62567163 62567374 -97032409 + B3 SINE B2 2 216 0 7 1062 488 16 16 0 chr3 62568183 62568244 -97031539 + (CA)n Simple_repeat Simple_repeat 2 63 0 7 1062 34774 70 9 4 chr3 62568324 62574299 -97025484 - L1Md_F2 LINE L1 0 6585 484 7 1062 256 196 0 0 chr3 62574547 62574603 -97025180 + A-rich Low_complexity Low_complexity 1 56 0 7 1062 240 224 20 0 chr3 62574711 62574760 -97025023 - ORR1E LTR MaLR -209 150 101 7 1062 180 339 0 0 chr3 62576170 62576226 -97023557 + MIR3 SINE MIR 126 181 -27 7 1062 738 284 149 4 chr3 62576639 62576894 -97022889 - B4A SINE B4 0 292 1 7 1062 385 147 0 42 chr3 62576930 62577001 -97022782 - B1_Mm SINE Alu -8 139 72 8 1062 387 0 0 0 chr3 62577247 62577290 -97022493 + (TA)n Simple_repeat Simple_repeat 2 44 0 8 1062 2765 239 26 6 chr3 62577367 62578011 -97021772 - Lx LINE L1 -371 7273 6617 8 1062 490 188 12 0 chr3 62578133 62578218 -97021565 + B1F SINE Alu 63 148 -1 8 1062 401 340 31 19 chr3 62578347 62578509 -97021274 - MER5A1 DNA MER1_type 0 166 3 8 1062 1627 177 153 0 chr3 62578584 62578917 -97020866 + ORR1C2 LTR MaLR 1 384 0 8 1062 1080 86 0 0 chr3 62578981 62579121 -97020662 + B1_Mus1 SINE Alu 1 140 -8 8 1062 207 0 0 0 chr3 62579121 62579144 -97020639 + (CAA)n Simple_repeat Simple_repeat 2 24 0 8 1062 441 227 6 78 chr3 62579332 62579499 -97020284 + L1_Mur3 LINE L1 4539 4693 -1187 8 1062 2878 96 8 2 chr3 62579542 62579940 -97019843 + MTB LTR MaLR 1 400 0 8 1062 606 317 31 65 chr3 62579941 62580231 -97019552 + Lx8 LINE L1 6700 6979 -494 9 1062 2722 105 48 5 chr3 62580238 62580650 -97019133 - RLTR23 LTR ERV1 0 430 1 9 1062 1546 194 57 62 chr3 62581506 62581961 -97017822 - Lx LINE L1 -12 6642 6207 8 1062 3283 94 57 6 chr3 62581951 62582538 -97017245 - Lx LINE L1 -575 6079 5472 8 1062 1657 129 36 0 chr3 62582537 62582815 -97016968 - Lx2 LINE L1 -809 6188 5901 9 1062 197 349 16 0 chr3 62584266 62584329 -97015454 - L2c LINE L2 -53 3334 3271 9 1062 216 0 0 0 chr3 62584529 62584553 -97015230 + (A)n Simple_repeat Simple_repeat 1 24 0 9 1062 749 285 111 19 chr3 62584728 62585053 -97014730 + ORR1E LTR MaLR 5 359 0 9 1062 240 313 17 17 chr3 62586396 62586513 -97013270 - Lx6 LINE L1 -35 7425 7309 9 1062 7451 95 4 1 chr3 62586494 62587992 -97011791 + L1_Mus2 LINE L1 5066 6566 0 9 1062 284 320 30 69 chr3 62587983 62588245 -97011538 - Lx7 LINE L1 -161 7535 7284 9 1062 1474 214 66 13 chr3 62588248 62588551 -97011232 + ORR1B2 LTR MaLR 6 324 -43 9 1062 1147 75 7 0 chr3 62588551 62588697 -97011086 + B1_Mus2 SINE Alu 1 147 0 1 1062 351 167 0 0 chr3 62588729 62588783 -97011000 + ORR1B2 LTR MaLR 321 374 -4 9 1062 2381 258 7 9 chr3 62588787 62589357 -97010426 - Lx7 LINE L1 -416 7280 6712 9 1062 693 227 6 35 chr3 62589385 62589420 -97010363 - Lx7 LINE L1 -1874 5822 5788 9 1062 198 0 0 0 chr3 62589420 62589442 -97010341 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 1 1062 693 233 9 33 chr3 62589442 62589590 -97010193 - Lx7 LINE L1 -363 5810 5660 9 1062 201 172 69 0 chr3 62591062 62591120 -97008663 + (TATATG)n Simple_repeat Simple_repeat 4 65 0 1 1062 231 231 28 0 chr3 62591147 62591255 -97008528 + (TA)n Simple_repeat Simple_repeat 2 112 0 1 1062 378 188 32 49 chr3 62591786 62591909 -97007874 - Lx9 LINE L1 -2 7642 7522 1 1062 513 84 0 0 chr3 62591913 62591984 -97007799 + (TA)n Simple_repeat Simple_repeat 2 72 0 1 1062 896 227 14 18 chr3 62591987 62592207 -97007576 - Lx9 LINE L1 -179 7465 7247 1 1062 36 23 0 0 chr3 62592225 62592268 -97007515 + AT_rich Low_complexity Low_complexity 1 43 0 1 1062 1779 266 32 18 chr3 62592316 62592999 -97006784 - Lx6 LINE L1 -3 7457 6457 1 1062 2737 168 20 20 chr3 62593010 62593432 -97006351 + RLTR11A2 LTR ERVK 3 430 -97 1 1062 7108 103 22 3 chr3 62593432 62594436 -97005347 + RLTR13D2 LTR ERVK 1 1023 0 1 1062 2737 168 20 20 chr3 62594436 62594523 -97005260 + RLTR11A2 LTR ERVK 431 512 -15 1 1062 581 273 7 7 chr3 62594528 62594668 -97005115 - Lx6 LINE L1 -764 6696 6557 1 1062 683 242 71 89 chr3 62595233 62595514 -97004269 - RMER12 LTR ERVK -101 1221 946 1 1062 4311 172 15 36 chr3 62595488 62596303 -97003480 - RMER12 LTR ERVK -524 798 1 1 1062 31 0 0 0 chr3 62596437 62596468 -97003315 + AT_rich Low_complexity Low_complexity 1 31 0 1 1062 5444 134 2 9 chr3 62596498 62597343 -97002440 - Lx LINE L1 0 6654 5816 1 1062 418 138 27 18 chr3 62599201 62599312 -97000471 + (TA)n Simple_repeat Simple_repeat 1 112 0 1 1062 224 340 9 19 chr3 62599982 62600090 -96999693 + MIRb SINE MIR 132 238 -30 1 1062 457 295 37 31 chr3 62600703 62600864 -96998919 - RSINE1 SINE B4 0 165 4 1 1062 506 304 94 7 chr3 62600952 62601164 -96998619 + MIR SINE MIR 18 238 -30 1 1062 183 100 0 0 chr3 62601443 62601473 -96998310 + (T)n Simple_repeat Simple_repeat 1 30 0 1 1062 518 382 84 10 chr3 62602204 62602595 -96997188 - L2a LINE L2 0 3426 3007 1 1062 488 200 21 0 chr3 62602694 62602789 -96996994 + 7SLRNA srpRNA srpRNA 81 177 -137 1 1062 570 297 112 95 chr3 62603908 62604257 -96995526 + ORR1E LTR MaLR 1 355 -4 1 1062 1637 206 89 42 chr3 62605092 62605720 -96994063 - BGLII_B LTR ERVK -24 537 1 1 1062 5735 149 56 13 chr3 62605914 62606993 -96992790 + L1_Mur2 LINE L1 4289 5413 -464 1 1062 335 280 98 8 chr3 62607014 62607188 -96992595 - MT2A LTR ERVL -67 534 340 1 1062 533 259 67 162 chr3 62607175 62607540 -96992243 - RLTR18 LTR ERVK -199 417 121 1 1062 2199 180 10 15 chr3 62607612 62608012 -96991771 + Lx3C LINE L1 6570 6967 -9 1 1062 30 27 0 0 chr3 62608012 62608049 -96991734 + AT_rich Low_complexity Low_complexity 1 37 0 1 1062 602 196 89 20 chr3 62608070 62608236 -96991547 - MT2A LTR ERVL -162 313 94 1 1062 452 227 70 35 chr3 62608247 62608361 -96991422 - MT2A LTR ERVL -412 121 4 1 1062 2505 88 5 14 chr3 62608933 62609304 -96990479 - L1_Mus4 LINE L1 -5 6631 6264 1 1062 1063 75 7 0 chr3 62609307 62609453 -96990330 - L1_Mus4 LINE L1 -600 6036 5890 1 1062 836 251 35 44 chr3 62610847 62611076 -96988707 + Lx6 LINE L1 7006 7232 -228 1 1062 354 45 0 0 chr3 62611076 62611120 -96988663 + (TC)n Simple_repeat Simple_repeat 2 45 0 1 1062 240 77 38 19 chr3 62611145 62611198 -96988585 + (TC)n Simple_repeat Simple_repeat 1 54 0 1 1062 296 339 18 0 chr3 62611378 62611487 -96988296 + Lx7 LINE L1 7211 7321 -375 1 1062 207 0 0 0 chr3 62611495 62611518 -96988265 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 1 1062 6372 99 26 11 chr3 62611776 62612695 -96987088 + L1_Mus4 LINE L1 5704 6636 0 1 1062 524 286 38 0 chr3 62612992 62613125 -96986658 - Lx7 LINE L1 -756 6940 6803 1 1062 334 228 10 10 chr3 62613149 62613251 -96986532 + GA-rich Low_complexity Low_complexity 1 102 0 1 1062 300 295 116 0 chr3 62613363 62613458 -96986325 + PB1 SINE Alu 1 106 -21 1 1062 518 243 9 0 chr3 62613374 62613481 -96986302 + ID_B1 SINE B4 93 200 -24 1 1062 854 301 34 22 chr3 62614092 62614415 -96985368 + RLTR15 LTR ERVK 1 327 -32 1 1062 1068 69 0 0 chr3 62615173 62615332 -96984451 + (CA)n Simple_repeat Simple_repeat 2 160 0 1 1062 827 217 0 27 chr3 62616328 62616513 -96983270 + L1VL1 LINE L1 11 190 -6232 1 1062 291 54 0 0 chr3 62616545 62616582 -96983201 + (A)n Simple_repeat Simple_repeat 1 37 0 1 1062 901 265 12 56 chr3 62616583 62616835 -96982948 - MTE-int LTR MaLR -1318 262 22 1 1062 845 300 119 0 chr3 62616890 62617133 -96982650 - MTE2b LTR MaLR -105 274 3 1 1062 24 0 0 0 chr3 62617209 62617233 -96982550 + AT_rich Low_complexity Low_complexity 1 24 0 1 1062 736 305 102 105 chr3 62617233 62617643 -96982140 - MLT2D LTR ERVL 0 414 6 1 1062 216 0 0 0 chr3 62617905 62617929 -96981854 + (TTCA)n Simple_repeat Simple_repeat 3 26 0 1 1062 31353 67 36 12 chr3 62620138 62621019 -96978764 - L1Md_F2 LINE L1 -12 6570 5666 1 1062 2467 82 68 11 chr3 62621019 62621388 -96978395 + RLTR10 LTR ERVK 1 390 0 1 1062 31353 110 22 65 chr3 62621388 62627309 -96972474 - L1Md_F2 LINE L1 -218 5665 217 1 1062 2061 249 39 16 chr3 62627398 62627911 -96971872 - MT2A LTR ERVL -8 525 1 1 1062 1069 95 0 33 chr3 62628560 62628572 -96971211 - B1_Mus1 SINE Alu 0 148 140 1 1062 201 39 0 0 chr3 62628572 62628598 -96971185 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 1 1062 1069 95 0 33 chr3 62628598 62628738 -96971045 - B1_Mus1 SINE Alu -9 139 1 1 1062 21 36 0 0 chr3 62628944 62628972 -96970811 + AT_rich Low_complexity Low_complexity 1 28 0 1 1062 288 0 0 0 chr3 62628998 62629030 -96970753 + (TA)n Simple_repeat Simple_repeat 2 33 0 1 1062 213 317 0 45 chr3 62629052 62629118 -96970665 + L2c LINE L2 3324 3386 -1 1 1062 255 318 71 0 chr3 62629387 62629472 -96970311 + B3 SINE B2 98 188 -28 1 1062 935 91 8 0 chr3 62631202 62631334 -96968449 + B1_Mus2 SINE Alu 15 147 0 1 1062 325 345 9 0 chr3 62631952 62632062 -96967721 + ORR1E LTR MaLR 43 153 -206 1 1062 181 359 0 15 chr3 62632635 62632700 -96967083 - L2c LINE L2 -37 3350 3287 1 1062 490 339 30 6 chr3 62632956 62633125 -96966658 - RMER30 DNA MER1_type -12 190 18 1 1062 357 360 40 53 chr3 62633636 62633862 -96965921 - HAL1 LINE L1 -1882 625 403 1 1062 22 0 0 0 chr3 62633967 62633989 -96965794 + AT_rich Low_complexity Low_complexity 1 22 0 1 1062 919 242 19 19 chr3 62634284 62634499 -96965284 - B3 SINE B2 0 216 2 1 1062 1100 303 96 10 chr3 62634513 62635003 -96964780 + Lx8 LINE L1 6941 7472 -1 1 1062 8770 123 32 16 chr3 62636110 62638537 -96961246 + Lx3C LINE L1 4455 6919 -57 1 1062 21 0 0 0 chr3 62638608 62638629 -96961154 + AT_rich Low_complexity Low_complexity 1 21 0 1 1062 243 0 0 0 chr3 62639838 62639865 -96959918 + (TG)n Simple_repeat Simple_repeat 2 28 0 1 1062 1046 84 35 0 chr3 62640444 62640587 -96959196 + B1_Mus1 SINE Alu 1 148 0 1 1062 556 50 25 0 chr3 62641271 62641351 -96958432 + (TC)n Simple_repeat Simple_repeat 1 82 0 1 1062 251 211 18 0 chr3 62641369 62641426 -96958357 + (TG)n Simple_repeat Simple_repeat 1 58 0 1 1062 692 307 88 23 chr3 62641450 62641713 -96958070 - B4A SINE B4 -11 281 2 1 1062 410 320 87 53 chr3 62641728 62641992 -96957791 - MER65D LTR ERV1 -17 456 184 1 1062 198 0 0 0 chr3 62642209 62642231 -96957552 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 1 1062 978 272 60 33 chr3 62643534 62643928 -96955855 + MLT2B4 LTR ERVL 3 401 -13 1 1062 1898 86 18 15 chr3 62644195 62644467 -96955316 - L1Md_F2 LINE L1 -16 6566 6294 1 1062 911 55 0 0 chr3 62644468 62644578 -96955205 + L1Md_F2 LINE L1 6084 6193 -389 1 1062 1277 264 59 48 chr3 62644664 62644703 -96955080 - Lx8 LINE L1 -1 7472 7444 1 1062 1903 214 2 71 chr3 62644703 62645155 -96954628 + MTC LTR MaLR 1 421 0 1 1062 1277 264 59 48 chr3 62645155 62645370 -96954413 - Lx8 LINE L1 -30 7443 7227 1 1062 264 30 0 0 chr3 62645370 62645403 -96954380 + (TC)n Simple_repeat Simple_repeat 1 33 0 1 1062 1277 264 59 48 chr3 62645403 62645604 -96954179 - Lx8 LINE L1 -247 7226 7013 1 1062 329 246 124 23 chr3 62645751 62645880 -96953903 - L1MEe LINE L1 -3868 3389 3248 1 1062 228 308 83 25 chr3 62646065 62646185 -96953598 - L1MEe LINE L1 -5781 454 328 1 1062 203 358 124 40 chr3 62647141 62647342 -96952441 - L2a LINE L2 -272 3154 2937 1 1062 192 77 0 0 chr3 62647857 62647883 -96951900 + (CA)n Simple_repeat Simple_repeat 2 27 0 1 1062 435 38 0 0 chr3 62649061 62649114 -96950669 + (TAGA)n Simple_repeat Simple_repeat 2 54 0 1 1062 395 328 46 0 chr3 62649116 62649290 -96950493 - Lx9 LINE L1 -189 7455 7274 1 1062 342 128 0 0 chr3 62649338 62649410 -96950373 - L1VL1 LINE L1 -5736 1246 1175 1 1062 6912 62 1 0 chr3 62649405 62650266 -96949517 + L1_Mus1 LINE L1 5706 6567 0 1 1062 209 268 0 0 chr3 62650293 62650364 -96949419 + T-rich Low_complexity Low_complexity 1 71 0 1 1062 225 104 0 111 chr3 62650365 62650419 -96949364 - Lx4A LINE L1 -2 7056 7009 1 1062 446 346 126 59 chr3 62650780 62651201 -96948582 - MT2A LTR ERVL -78 455 7 1 1062 444 293 22 16 chr3 62651201 62651385 -96948398 - ERVL-int LTR ERVL -10 5747 5563 1 1062 288 0 0 0 chr3 62651391 62651423 -96948360 + (TG)n Simple_repeat Simple_repeat 2 33 0 1 1062 349 326 10 0 chr3 62651423 62651521 -96948262 - ERVL-int LTR ERVL -1075 4682 4584 1 1062 325 306 30 54 chr3 62651534 62651700 -96948083 - ERVL-B4-int LTR ERVL -307 5454 5293 1 1062 1712 266 159 9 chr3 62651694 62652274 -96947509 - ERVL-B4-int LTR ERVL -1959 3802 3136 1 132 640 299 57 0 chr3 62652285 62652496 -96947287 - ERVL-B4-int LTR ERVL -2808 2953 2731 1 1063 2571 305 62 33 chr3 62652499 62653407 -96946376 - ERVL-B4-int LTR ERVL -3131 2583 1636 1 1063 1430 222 116 12 chr3 62653407 62653744 -96946039 + ORR1D1 LTR MaLR 1 372 -2 1 1063 2571 305 62 33 chr3 62653744 62653919 -96945864 - ERVL-B4-int LTR ERVL -4079 1635 1469 1 1063 239 231 118 14 chr3 62653919 62654070 -96945713 + L1VL2 LINE L1 443 487 -5848 1 1063 3014 152 34 15 chr3 62654112 62654790 -96944993 + L1VL2 LINE L1 443 1133 -2482 1 1063 1597 155 36 0 chr3 62654782 62655059 -96944724 + L1_Mur1 LINE L1 2287 2573 -3313 1 1063 273 298 26 17 chr3 62655243 62655359 -96944424 - ERVL-B4-int LTR ERVL -5186 575 459 1 1063 2317 280 138 43 chr3 62655365 62656377 -96943406 - MTC-int LTR MaLR -74 1184 77 1 1063 27 29 0 0 chr3 62656426 62656460 -96943323 + AT_rich Low_complexity Low_complexity 1 34 0 1 1063 288 0 0 0 chr3 62657974 62658006 -96941777 + (TTTTTG)n Simple_repeat Simple_repeat 2 33 0 1 1063 854 100 0 0 chr3 62658280 62658400 -96941383 - B1_Mus1 SINE Alu -28 120 1 1 1063 260 258 0 64 chr3 62658400 62658433 -96941350 - ORR1B1-int LTR MaLR -863 646 623 1 1063 30 45 0 0 chr3 62659075 62659119 -96940664 + AT_rich Low_complexity Low_complexity 1 44 0 1 1063 5014 136 16 1 chr3 62659129 62659932 -96939851 - Lx2 LINE L1 -2 6995 6181 1 1063 596 309 72 31 chr3 62660893 62661345 -96938438 - L1MD LINE L1 -670 5689 5208 1 1063 1903 70 0 4 chr3 62661504 62661749 -96938034 - L1_Mus2 LINE L1 -1 6565 6322 2 1063 269 383 0 12 chr3 62661751 62661833 -96937950 - PB1D10 SINE Alu -36 81 1 2 1063 792 275 34 59 chr3 62661852 62662324 -96937459 - L1MD LINE L1 -984 5162 4703 1 1063 282 322 79 20 chr3 62662727 62662879 -96936904 + ERVL-B4-int LTR ERVL 4863 5023 -691 2 1063 280 319 21 0 chr3 62663282 62663376 -96936407 - B1F SINE Alu -2 147 52 2 1063 450 53 0 0 chr3 62663581 62663638 -96936145 + (TG)n Simple_repeat Simple_repeat 1 57 0 2 1063 943 297 110 42 chr3 62664254 62664609 -96935174 + MTEa LTR MaLR 1 379 0 2 1063 22 0 0 0 chr3 62664618 62664640 -96935143 + AT_rich Low_complexity Low_complexity 1 22 0 2 1063 937 320 73 69 chr3 62665974 62667821 -96931962 + L1M3 LINE L1 2978 4798 -1082 2 1063 1994 280 60 44 chr3 62667837 62668174 -96931609 - L1_Rod LINE L1 -1687 4160 3806 2 1063 525 92 0 0 chr3 62668174 62668250 -96931533 + (CTTA)n Simple_repeat Simple_repeat 4 79 0 2 1063 1994 280 60 44 chr3 62668250 62668820 -96930963 - L1_Rod LINE L1 -2042 3805 3239 2 1063 312 91 0 0 chr3 62668820 62668864 -96930919 + (TTTC)n Simple_repeat Simple_repeat 2 45 0 2 1063 40 37 0 0 chr3 62669055 62669109 -96930674 + AT_rich Low_complexity Low_complexity 1 54 0 2 1063 301 264 122 30 chr3 62669279 62669443 -96930340 - L1_Rod LINE L1 -2827 3020 2842 2 1063 4448 79 55 8 chr3 62669478 62670118 -96929665 - L1_Mus4 LINE L1 -8 6628 5959 2 1063 6650 140 13 45 chr3 62670120 62670306 -96929477 - L1_Mm LINE L1 -962 4921 4737 2 1063 206 32 32 0 chr3 62670306 62670337 -96929446 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 2 1063 6650 140 13 45 chr3 62670337 62670823 -96928960 - L1_Mm LINE L1 -1147 4736 4301 2 1063 2420 48 7 0 chr3 62670823 62671132 -96928651 + L1Md_F2 LINE L1 6271 6581 -1 2 1063 6650 140 13 45 chr3 62671132 62671569 -96928214 - L1_Mm LINE L1 -1583 4300 3849 2 1063 185 0 40 0 chr3 62671569 62671594 -96928189 + (TTTTG)n Simple_repeat Simple_repeat 5 30 0 2 1063 6650 140 13 45 chr3 62671594 62671678 -96928105 - L1_Mm LINE L1 -2035 3848 3765 2 1063 1235 310 75 15 chr3 62671695 62672322 -96927461 - L1_Rod LINE L1 -3053 2794 2127 2 1063 498 70 0 0 chr3 62672800 62672871 -96926912 + (TG)n Simple_repeat Simple_repeat 2 72 0 2 1063 1269 215 116 42 chr3 62674478 62674813 -96924970 + ORR1D1 LTR MaLR 1 360 -14 2 1063 938 264 32 64 chr3 62674906 62675310 -96924473 + RMER17C LTR ERVK 1 391 -19 2 1063 22 0 0 0 chr3 62675773 62675795 -96923988 + AT_rich Low_complexity Low_complexity 1 22 0 2 1063 731 202 0 60 chr3 62675921 62676121 -96923662 - B2_Mm2 SINE B2 -6 189 2 2 1063 219 348 99 28 chr3 62676520 62676662 -96923121 + MIR SINE MIR 30 181 -81 2 1063 37786 48 0 4 chr3 62676915 62683599 -96916184 - L1Md_T LINE L1 0 6585 1 2 1063 544 201 102 22 chr3 62684423 62684560 -96915223 + B1_Mur4 SINE Alu 2 149 -1 2 1063 1479 179 129 18 chr3 62684697 62685038 -96914745 + RMER12 LTR ERVK 526 904 -418 2 1063 910 254 9 9 chr3 62685397 62685612 -96914171 - B3 SINE B2 0 216 2 2 1063 643 238 0 39 chr3 62685645 62685798 -96913985 + B3A SINE B2 1 147 -51 2 1063 183 80 0 0 chr3 62685822 62685847 -96913936 + (A)n Simple_repeat Simple_repeat 1 25 0 2 1063 1437 138 116 47 chr3 62686679 62686884 -96912899 + RMER17C LTR ERVK 1 218 -192 2 1063 453 50 0 0 chr3 62686884 62686944 -96912839 + (TC)n Simple_repeat Simple_repeat 2 61 0 2 1063 1437 138 116 47 chr3 62686944 62687119 -96912664 + RMER17C LTR ERVK 219 407 -3 2 1063 647 301 76 46 chr3 62687279 62687577 -96912206 - MLT1C LTR MaLR -157 310 1 2 1063 1756 281 45 4 chr3 62689495 62689981 -96909802 + RMER20A LTR ERVK 11 516 0 2 1063 566 314 103 59 chr3 62692771 62692839 -96906944 - Lx8 LINE L1 -144 7329 7262 2 1063 2915 41 120 0 chr3 62692839 62693206 -96906577 - IAPLTR2a LTR ERVK 0 411 1 2 1063 566 315 92 48 chr3 62693206 62693454 -96906329 - Lx8 LINE L1 -212 7261 6989 2 1063 874 311 30 42 chr3 62693695 62693960 -96905823 + B4 SINE B4 30 291 -1 2 1063 238 192 39 0 chr3 62693960 62694012 -96905771 + (CATATA)n Simple_repeat Simple_repeat 1 54 0 2 1063 1751 256 30 5 chr3 62694975 62695380 -96904403 - MTD LTR MaLR -2 417 3 2 1063 1223 255 60 25 chr3 62695625 62695991 -96903792 - MTE2b LTR MaLR 0 379 1 2 1063 224 77 26 0 chr3 62696298 62696337 -96903446 + (TG)n Simple_repeat Simple_repeat 2 41 0 2 1063 488 186 9 0 chr3 62696434 62696547 -96903236 + GA-rich Low_complexity Low_complexity 3 116 0 2 1063 7010 249 55 21 chr3 62699077 62700415 -96899368 - Lx6 LINE L1 0 7460 6070 2 1063 6768 65 38 3 chr3 62700415 62701313 -96898470 + RLTR13B3 LTR ERVK 1 929 0 2 1063 7010 211 30 5 chr3 62701313 62702168 -96897615 - Lx6 LINE L1 -1391 6069 5197 2 1063 3022 69 10 2 chr3 62702168 62702561 -96897222 - MTA_Mm LTR MaLR 0 396 1 2 1063 5277 84 8 142 chr3 62702561 62703554 -96896229 - MTA_Mm-int LTR MaLR 0 1098 239 2 1063 7173 193 67 24 chr3 62703587 62704145 -96895638 - Lx6 LINE L1 -674 5206 4613 2 1063 252 59 0 0 chr3 62704145 62704179 -96895604 + (TA)n Simple_repeat Simple_repeat 2 35 0 2 1063 7173 193 67 24 chr3 62704179 62705350 -96894433 - Lx6 LINE L1 -1268 4612 3403 2 1063 32923 81 5 4 chr3 62705350 62706619 -96893164 - L1Md_F2 LINE L1 -12 6570 5297 2 1063 6590 55 1 0 chr3 62706619 62707443 -96892340 - L1Md_F2 LINE L1 -1 6581 5757 2 1063 32923 88 12 3 chr3 62707443 62712327 -96887456 - L1Md_F2 LINE L1 -587 5296 369 2 1063 2017 179 103 43 chr3 62712310 62712573 -96887210 - Lx6 LINE L1 -2463 3417 3128 2 1063 248 0 31 0 chr3 62712573 62712605 -96887178 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 2 1063 2017 179 103 43 chr3 62712605 62712923 -96886860 - Lx6 LINE L1 -2753 3127 2802 2 1063 2946 197 119 69 chr3 62712918 62713998 -96885785 - Lx6 LINE L1 -3654 2226 1087 2 1063 1743 273 29 65 chr3 62714048 62714897 -96884886 + L1_Rod LINE L1 3795 4613 -1234 2 1063 7043 95 14 5 chr3 62714994 62716473 -96883310 - L1VL2 LINE L1 -1575 2040 546 2 1063 1185 228 41 18 chr3 62716446 62716786 -96882997 - Lx6 LINE L1 -6517 1211 864 2 1063 545 382 29 3 chr3 62716855 62717165 -96882618 - Lx6 LINE L1 -7069 659 342 2 1063 364 303 85 16 chr3 62717474 62717662 -96882121 - L1MA4A LINE L1 -282 6018 5818 2 1063 323 199 29 16 chr3 62718777 62718925 -96880858 + L1M4b LINE L1 1767 1929 -4975 2 1063 822 94 0 0 chr3 62718928 62719045 -96880738 + (CTTTG)n Simple_repeat Simple_repeat 2 118 0 2 1063 1107 72 0 0 chr3 62719045 62719183 -96880600 - B1_Mus1 SINE Alu -9 139 2 2 1063 26 30 0 0 chr3 62719248 62719281 -96880502 + AT_rich Low_complexity Low_complexity 1 33 0 2 1063 22 0 0 0 chr3 62719377 62719399 -96880384 + AT_rich Low_complexity Low_complexity 1 22 0 2 1063 1189 54 0 0 chr3 62719429 62719576 -96880207 + B1_Mus2 SINE Alu 1 147 0 2 1063 454 303 58 62 chr3 62719613 62719725 -96880058 + L1MB8 LINE L1 5725 5838 -340 2 1063 2697 46 3 31 chr3 62719725 62720081 -96879702 + ORR1A0 LTR MaLR 1 346 0 2 1063 454 303 58 62 chr3 62720081 62720418 -96879365 + L1MB8 LINE L1 5839 6172 -6 2 1063 226 299 123 82 chr3 62720655 62720801 -96878982 - MER46C DNA MER2_type -6 332 181 2 1063 511 257 0 10 chr3 62721115 62721217 -96878566 + PB1D10 SINE Alu 3 103 -14 2 1063 283 247 24 0 chr3 62721218 62721303 -96878480 + GA-rich Low_complexity Low_complexity 5 91 0 2 1063 1067 101 12 17 chr3 62721686 62721858 -96877925 + L1Md_F2 LINE L1 6411 6581 -1 2 1063 1950 96 3 49 chr3 62721865 62722172 -96877611 - Lx3C LINE L1 -318 5568 5276 2 1063 8025 122 21 15 chr3 62722167 62723385 -96876398 + Lx3C LINE L1 5541 6769 -207 2 1063 243 0 0 0 chr3 62723385 62723412 -96876371 + (CA)n Simple_repeat Simple_repeat 2 28 0 2 1063 486 0 0 0 chr3 62723412 62723465 -96876318 + (GA)n Simple_repeat Simple_repeat 2 55 0 2 1063 8025 124 30 21 chr3 62723465 62723665 -96876118 + Lx3C LINE L1 6770 6968 -8 2 1063 456 316 88 28 chr3 62723689 62723940 -96875843 + ORR1D2 LTR MaLR 103 368 -2 2 1063 877 282 177 25 chr3 62723942 62724516 -96875267 + ORR1D2-int LTR MaLR 1 686 -894 2 1063 23 54 0 0 chr3 62724917 62724954 -96874829 + AT_rich Low_complexity Low_complexity 1 37 0 2 1063 225 94 0 0 chr3 62725096 62725128 -96874655 + (T)n Simple_repeat Simple_repeat 1 32 0 2 1063 1067 70 0 7 chr3 62725128 62725271 -96874512 - B1_Mus2 SINE Alu 0 147 6 2 1063 356 320 115 54 chr3 62725496 62726329 -96873454 - L1MC4a LINE L1 -1436 6446 5563 2 1063 311 320 101 35 chr3 62726980 62727271 -96872512 - L1MC4a LINE L1 -3227 2919 2613 2 1063 239 299 102 9 chr3 62727373 62727481 -96872302 + MER58B DNA MER1_type 206 323 -18 2 1063 25 51 0 0 chr3 62728375 62728414 -96871369 + AT_rich Low_complexity Low_complexity 1 39 0 2 1063 1733 346 76 29 chr3 62729680 62730818 -96868965 - Lx8 LINE L1 -6 7467 6277 2 1063 32426 73 3 4 chr3 62730814 62735261 -96864522 - L1Md_F2 LINE L1 -168 6414 1967 2 1063 233 29 29 0 chr3 62735261 62735295 -96864488 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 2 1063 32426 101 5 7 chr3 62735295 62736965 -96862818 - L1Md_F2 LINE L1 -3917 1966 301 2 1063 37 39 0 0 chr3 62737049 62737100 -96862683 + AT_rich Low_complexity Low_complexity 1 51 0 2 1063 188 173 0 37 chr3 62737101 62737155 -96862628 + GA-rich Low_complexity Low_complexity 4 55 0 2 1063 234 302 11 11 chr3 62737161 62737248 -96862535 - Lx8 LINE L1 -1301 6172 6086 2 1063 1416 219 95 32 chr3 62737299 62737647 -96862136 - ORR1D1 LTR MaLR -4 370 1 2 1063 2824 254 89 31 chr3 62737702 62738907 -96860876 - Lx8 LINE L1 -1507 5966 4667 2 1063 2869 277 71 94 chr3 62738901 62739124 -96860659 - Lx8 LINE L1 -2211 3669 3432 2 1063 465 103 0 0 chr3 62739124 62739192 -96860591 + (TA)n Simple_repeat Simple_repeat 1 68 0 2 1063 2869 277 71 94 chr3 62739192 62741291 -96858492 - Lx8 LINE L1 -2449 3431 1403 2 1063 312 27 0 0 chr3 62741438 62741475 -96858308 + (CA)n Simple_repeat Simple_repeat 1 37 0 2 1063 203 79 26 0 chr3 62741866 62741904 -96857879 + (TCTG)n Simple_repeat Simple_repeat 4 42 0 2 1063 889 215 116 61 chr3 62742941 62743084 -96856699 + Lx7 LINE L1 7385 7543 -153 2 1063 212 0 36 0 chr3 62743084 62743112 -96856671 + (TTATA)n Simple_repeat Simple_repeat 2 30 0 2 1063 889 215 116 61 chr3 62743112 62743261 -96856522 + Lx7 LINE L1 7544 7692 -4 2 1063 281 26 0 26 chr3 62743696 62743735 -96856048 + (TTTA)n Simple_repeat Simple_repeat 3 40 0 2 1063 604 184 63 42 chr3 62743812 62743954 -96855829 - B1_Mur2 SINE Alu -1 148 4 2 1063 982 54 0 0 chr3 62743995 62744124 -96855659 - L1Md_F2 LINE L1 -12 6570 6442 2 1063 282 95 0 0 chr3 62744902 62744944 -96854839 + (TG)n Simple_repeat Simple_repeat 1 42 0 2 1063 423 0 0 0 chr3 62744944 62744990 -96854793 + (GA)n Simple_repeat Simple_repeat 1 47 0 2 1063 2425 228 69 68 chr3 62745141 62745848 -96853935 - MTD-int LTR MaLR -448 810 1 2 1063 1745 233 83 0 chr3 62745844 62746230 -96853553 - MTD LTR MaLR -1 418 1 2 1063 3010 163 29 143 chr3 62747369 62748316 -96851467 - RMER17D LTR ERVK -50 839 1 2 1063 257 179 12 93 chr3 62748616 62748702 -96851081 + MLT1A1 LTR MaLR 329 407 -1 2 1063 1170 273 110 21 chr3 62750222 62750559 -96849224 - ORR1D2 LTR MaLR -3 367 1 2 1063 410 0 0 20 chr3 62750888 62750939 -96848844 + (TTTTA)n Simple_repeat Simple_repeat 2 51 0 2 1063 567 193 114 0 chr3 62750940 62751054 -96848729 - B3 SINE B2 -88 128 2 2 1063 1656 16 0 20 chr3 62751693 62751889 -96847894 - B2_Mm1a SINE B2 0 193 2 2 1063 291 145 0 0 chr3 62751892 62751961 -96847822 + (T)n Simple_repeat Simple_repeat 1 69 0 2 1063 1113 55 7 7 chr3 62751962 62752108 -96847675 - B1_Mm SINE Alu 0 147 2 2 1063 567 263 0 42 chr3 62752295 62752414 -96847369 + B1F2 SINE Alu 21 134 -15 2 1063 229 327 35 93 chr3 62752313 62752485 -96847298 + MT2B LTR ERVL 191 352 -249 2 1063 2844 153 102 48 chr3 62752916 62753269 -96846514 + RMER6C LTR ERVK 1 375 -315 3 1063 377 51 0 33 chr3 62753269 62753330 -96846453 + (CAGA)n Simple_repeat Simple_repeat 2 60 0 3 1063 2844 176 78 68 chr3 62753330 62753821 -96845962 + RMER6C LTR ERVK 345 721 -35 3 1063 535 332 38 65 chr3 62753776 62754146 -96845637 - LTR48 LTR ERV1 -20 767 408 3 1063 251 333 108 54 chr3 62754440 62754570 -96845213 - LTR48 LTR ERV1 -643 144 8 3 1063 183 135 53 26 chr3 62754967 62755005 -96844778 - L3 LINE CR1 -3697 792 754 3 1063 1014 144 33 22 chr3 62755154 62755338 -96844445 + ORR1A1 LTR MaLR 87 272 -74 3 1063 266 84 56 14 chr3 62756769 62756841 -96842942 + T-rich Low_complexity Low_complexity 1 75 0 3 1063 1109 62 21 0 chr3 62756841 62756985 -96842798 - B1_Mus2 SINE Alu 0 147 1 3 1063 1824 186 134 5 chr3 62757123 62757496 -96842287 - MTC LTR MaLR 0 421 1 3 1063 2017 242 30 36 chr3 62757651 62758175 -96841608 + RMER19C LTR ERVK 90 610 -1 3 1063 34136 48 1 17 chr3 62758684 62763828 -96835955 + L1Md_A LINE L1 528 5586 -297 3 1063 8533 25 2 0 chr3 62763828 62764822 -96834961 + L1Md_A LINE L1 5587 6582 0 3 1063 21 0 0 0 chr3 62765327 62765348 -96834435 + AT_rich Low_complexity Low_complexity 1 21 0 3 1063 631 267 102 5 chr3 62765348 62765544 -96834239 - B3 SINE B2 -1 215 1 3 1063 333 317 18 90 chr3 62766102 62766213 -96833570 + B3A SINE B2 81 183 -15 3 1063 217 222 0 0 chr3 62766213 62766258 -96833525 + (CA)n Simple_repeat Simple_repeat 2 46 0 3 1063 609 14 0 0 chr3 62767129 62767199 -96832584 + (GGGA)n Simple_repeat Simple_repeat 3 72 0 3 1063 258 95 0 0 chr3 62767199 62767241 -96832542 + (CAGAGA)n Simple_repeat Simple_repeat 1 42 0 3 1063 233 325 73 24 chr3 62767339 62767421 -96832362 + PB1D10 SINE Alu 24 109 -8 3 1063 423 0 0 0 chr3 62767539 62767586 -96832197 + (TG)n Simple_repeat Simple_repeat 2 48 0 3 1063 2123 199 31 19 chr3 62767614 62768030 -96831753 - MTC LTR MaLR 0 421 1 3 1063 991 306 78 36 chr3 62768094 62768541 -96831242 - RMER5 LTR ERV1 -25 509 44 3 1063 3085 108 2 34 chr3 62768781 62769258 -96830525 - L1_Mus4 LINE L1 -1 6635 6174 3 1063 11590 152 28 14 chr3 62769269 62769993 -96829790 - L1_Mur2 LINE L1 -514 5363 4635 3 1063 207 0 0 0 chr3 62769993 62770016 -96829767 + (TTTTG)n Simple_repeat Simple_repeat 4 26 0 3 1063 11590 152 28 14 chr3 62770016 62771521 -96828262 - L1_Mur2 LINE L1 -1243 4634 3102 3 1063 303 280 0 0 chr3 62771632 62771725 -96828058 - Lx9 LINE L1 -356 7288 7196 3 1063 363 297 0 9 chr3 62771747 62771859 -96827924 + Lx9 LINE L1 5864 5974 -1670 3 1063 1115 236 72 14 chr3 62771885 62772177 -96827606 + Lx9 LINE L1 6687 6995 -649 3 1063 249 108 0 0 chr3 62772181 62772218 -96827565 + (TCC)n Simple_repeat Simple_repeat 3 39 0 3 1063 1026 291 137 13 chr3 62772402 62772476 -96827307 - MTD LTR MaLR 0 419 345 3 1063 2930 183 61 28 chr3 62772476 62773144 -96826639 + RMER6C LTR ERVK 1 690 0 3 1063 1026 291 137 13 chr3 62773144 62773442 -96826341 - MTD LTR MaLR -75 344 1 3 1063 356 328 139 46 chr3 62773916 62774197 -96825586 + MLT1F1 LTR MaLR 2 319 -250 3 1063 366 159 133 0 chr3 62774224 62774337 -96825446 - Lx4A LINE L1 -2 7056 6929 3 1063 3302 38 8 2 chr3 62774424 62774818 -96824965 + MTA_Mm LTR MaLR 1 396 0 3 1063 259 343 49 69 chr3 62774825 62774969 -96824814 + MLT1F1 LTR MaLR 351 491 -69 3 1063 334 0 47 47 chr3 62775031 62775095 -96824688 + (TTTTTG)n Simple_repeat Simple_repeat 3 66 0 3 1063 21 0 0 0 chr3 62775720 62775741 -96824042 + AT_rich Low_complexity Low_complexity 1 21 0 3 1063 602 64 0 31 chr3 62775923 62776020 -96823763 + (TA)n Simple_repeat Simple_repeat 2 95 0 3 1063 21 36 0 0 chr3 62778123 62778151 -96821632 + AT_rich Low_complexity Low_complexity 1 28 0 3 1063 1471 169 36 45 chr3 62778925 62779015 -96820768 - RMER1C Other Other -13 1329 1239 3 1063 360 0 0 0 chr3 62779015 62779055 -96820728 + (CA)n Simple_repeat Simple_repeat 2 41 0 3 1063 1471 169 36 45 chr3 62779055 62779299 -96820484 - RMER1C Other Other -104 1238 998 3 1063 488 231 19 0 chr3 62779342 62779446 -96820337 - RMER1C Other Other -344 998 893 3 1063 245 299 104 0 chr3 62779495 62779572 -96820211 - B1F SINE Alu -27 122 38 3 1063 752 269 96 41 chr3 62780342 62780633 -96819150 + Lx8 LINE L1 7075 7381 -92 3 1063 234 365 71 0 chr3 62781373 62781458 -96818325 + B4 SINE B4 14 104 -188 3 1063 286 319 58 33 chr3 62781417 62781460 -96818323 + B1F SINE Alu 21 143 -6 3 1063 375 247 13 0 chr3 62781460 62781537 -96818246 + ID_B1 SINE B4 141 218 -6 3 1063 7661 149 8 17 chr3 62781830 62783325 -96816458 - Lx3C LINE L1 -2 6974 5494 3 1064 298 312 0 0 chr3 62783532 62783596 -96816187 - ID4 SINE ID -17 66 3 3 1064 21 36 0 0 chr3 62783847 62783875 -96815908 + AT_rich Low_complexity Low_complexity 1 28 0 3 1064 276 252 33 123 chr3 62783897 62784019 -96815764 + MT2B LTR ERVL 154 264 -337 3 1064 726 225 0 28 chr3 62783911 62784045 -96815738 + B1_Mur4 SINE Alu 9 140 -10 3 1064 405 0 0 0 chr3 62784045 62784090 -96815693 + (CAAAA)n Simple_repeat Simple_repeat 3 47 0 3 1064 432 0 0 0 chr3 62784213 62784261 -96815522 + (CA)n Simple_repeat Simple_repeat 2 49 0 3 1064 347 238 179 0 chr3 62786219 62786387 -96813396 - L1MA5 LINE L1 -1 6299 6102 3 1064 336 306 167 11 chr3 62786455 62786768 -96813015 - L1MA5 LINE L1 -295 5996 5634 3 1064 438 271 123 26 chr3 62788191 62788346 -96811437 - B3A SINE B2 -4 194 25 3 1064 39466 5 0 0 chr3 62789436 62795850 -96803933 - L1Md_A LINE L1 0 6582 168 3 1064 381 295 103 107 chr3 62796435 62796556 -96803227 + B4A SINE B4 4 121 -171 3 1064 2649 52 0 169 chr3 62796556 62796995 -96802788 + RLTR10B2 LTR ERVK 1 365 0 3 1064 381 295 103 107 chr3 62796995 62797135 -96802648 + B4A SINE B4 122 264 -28 3 1064 363 23 0 0 chr3 62797142 62797186 -96802597 + (CA)n Simple_repeat Simple_repeat 1 44 0 3 1064 792 83 0 0 chr3 62798133 62798242 -96801541 + (TC)n Simple_repeat Simple_repeat 2 110 0 3 1064 1768 96 0 0 chr3 62798465 62798714 -96801069 - Lx LINE L1 -144 6510 6262 3 1064 1379 239 74 37 chr3 62798872 62799333 -96800450 - RLTR28B LTR ERVL -3 478 1 3 1064 284 357 72 48 chr3 62799341 62799550 -96800233 + MLT1J2 LTR MaLR 36 249 -199 3 1064 24 0 0 0 chr3 62799648 62799672 -96800111 + AT_rich Low_complexity Low_complexity 1 24 0 3 1064 401 36 18 0 chr3 62799883 62799938 -96799845 + (CA)n Simple_repeat Simple_repeat 2 57 0 3 1064 264 30 0 0 chr3 62800253 62800286 -96799497 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 3 1064 214 246 81 16 chr3 62801682 62801744 -96798039 - ID4 SINE ID -4 79 14 3 1064 3090 139 8 4 chr3 62801870 62802355 -96797428 + RLTR1C LTR ERV1 1 487 -16 3 1064 2169 171 42 12 chr3 62802884 62803293 -96796490 + MTC LTR MaLR 1 421 0 3 1064 595 240 323 7 chr3 62803938 62804223 -96795560 - MTE2b LTR MaLR 0 379 5 3 1064 313 333 107 0 chr3 62804849 62805017 -96794766 + L1M4 LINE L1 4980 5165 -981 3 1064 23 33 0 0 chr3 62805690 62805720 -96794063 + AT_rich Low_complexity Low_complexity 1 30 0 3 1064 520 247 73 0 chr3 62805853 62806003 -96793780 - Lx6 LINE L1 -707 6753 6593 3 1064 624 27 0 0 chr3 62806119 62806193 -96793590 + (CA)n Simple_repeat Simple_repeat 2 75 0 3 1064 1725 174 6 67 chr3 62806393 62806751 -96793032 + Lx4B LINE L1 6710 7045 -13 3 1064 1981 254 51 77 chr3 62806857 62807599 -96792184 + RMER19C LTR ERVK 1 717 -20 3 1064 7566 53 0 5 chr3 62807961 62808996 -96790787 - L1Md_F2 LINE L1 -19 6563 5534 3 1064 385 322 150 12 chr3 62809732 62809905 -96789878 - MTEa LTR MaLR -178 201 5 3 1064 865 329 94 49 chr3 62809908 62811009 -96788774 + L1MA8 LINE L1 3709 4858 -1022 3 1064 4535 122 42 0 chr3 62811014 62812183 -96787600 + L1Md_F LINE L1 392 1617 -4266 3 1064 31150 81 6 12 chr3 62812171 62817522 -96782261 + L1Md_F2 LINE L1 267 5585 -298 3 1064 7465 62 25 2 chr3 62817523 62818496 -96781287 + L1Md_F2 LINE L1 5587 6581 -1 3 1064 625 307 38 12 chr3 62818497 62818836 -96780947 + L1MA8 LINE L1 4874 5221 -922 3 1064 654 264 79 0 chr3 62819005 62819259 -96780524 + L1MA8 LINE L1 5629 5902 -389 3 1064 389 350 21 49 chr3 62819616 62819760 -96780023 + B1F SINE Alu 8 147 -2 3 1064 228 275 29 0 chr3 62819799 62819868 -96779915 + PB1D10 SINE Alu 37 107 -10 3 1064 1132 68 7 0 chr3 62819972 62820118 -96779665 + B1_Mm SINE Alu 1 147 0 3 1064 420 97 0 0 chr3 62820127 62820189 -96779594 + (TG)n Simple_repeat Simple_repeat 2 63 0 3 1064 864 238 41 0 chr3 62820449 62820621 -96779162 - B3 SINE B2 -37 179 1 3 1064 720 89 0 0 chr3 62820795 62820896 -96778887 + (TCTCC)n Simple_repeat Simple_repeat 5 105 0 3 1064 1869 251 64 7 chr3 62820898 62821492 -96778291 - Lx9 LINE L1 -44 7600 6973 3 1064 2016 211 35 0 chr3 62821500 62821894 -96777889 + MTC LTR MaLR 14 421 0 3 1064 752 195 19 14 chr3 62821894 62822067 -96777716 - Lx9 LINE L1 -664 6980 6665 3 1064 495 208 22 40 chr3 62822132 62822314 -96777469 - MT2B LTR ERVL -297 178 1 3 1064 21 71 0 0 chr3 62822314 62822356 -96777427 + AT_rich Low_complexity Low_complexity 1 42 0 3 1064 472 235 0 47 chr3 62824271 62824354 -96775429 + B3 SINE B2 87 169 -47 3 1064 369 0 0 0 chr3 62824354 62824395 -96775388 + (CATA)n Simple_repeat Simple_repeat 2 42 0 3 1064 472 235 0 47 chr3 62824395 62824418 -96775365 + B3 SINE B2 170 188 -28 3 1064 630 71 0 0 chr3 62824962 62825046 -96774737 + (GA)n Simple_repeat Simple_repeat 2 85 0 3 1064 653 295 0 7 chr3 62826197 62826337 -96773446 - RSINE1 SINE B4 -19 146 8 3 1064 360 0 0 0 chr3 62826584 62826624 -96773159 + (TA)n Simple_repeat Simple_repeat 2 41 0 3 1064 2972 93 0 2 chr3 62826737 62827134 -96772649 + MTA_Mm LTR MaLR 1 396 0 3 1064 467 217 86 9 chr3 62827813 62827929 -96771854 + Lx8 LINE L1 6767 6891 -582 3 1064 398 254 0 62 chr3 62827983 62828113 -96771670 + Lx8 LINE L1 6989 7110 -363 3 1064 1037 52 7 0 chr3 62828117 62828253 -96771530 + (GAA)n Simple_repeat Simple_repeat 2 138 0 3 1064 389 278 69 56 chr3 62828313 62828473 -96771310 + RLTR24 LTR ERV1 1 162 -367 3 1064 305 281 170 42 chr3 62828495 62828707 -96771076 + RLTR24 LTR ERV1 291 529 0 3 1064 3940 219 34 61 chr3 62830019 62830759 -96769024 + Lx6 LINE L1 863 1527 -4350 3 1064 1099 102 0 0 chr3 62830759 62830906 -96768877 + B1_Mus1 SINE Alu 2 148 0 3 1064 441 0 0 0 chr3 62830908 62830957 -96768826 + (TAA)n Simple_repeat Simple_repeat 1 49 0 3 1064 3940 201 22 49 chr3 62830957 62831491 -96768292 + Lx6 LINE L1 1528 2064 -3813 3 1064 267 103 0 0 chr3 62831491 62831530 -96768253 + (CCA)n Simple_repeat Simple_repeat 3 41 0 3 1064 3940 201 22 49 chr3 62831530 62831720 -96768063 + Lx6 LINE L1 2065 2243 -3634 3 1064 297 0 0 0 chr3 62831750 62831783 -96768000 + (CA)n Simple_repeat Simple_repeat 2 34 0 4 1064 1547 215 80 36 chr3 62831892 62832030 -96767753 + Lx6 LINE L1 3893 4037 -1843 3 1064 225 0 0 0 chr3 62832030 62832055 -96767728 + (CAAA)n Simple_repeat Simple_repeat 4 28 0 4 1064 1547 215 80 36 chr3 62832055 62832393 -96767390 + Lx6 LINE L1 4038 4390 -1490 3 1064 2608 262 83 70 chr3 62832389 62834001 -96765782 + Lx6 LINE L1 5444 7460 0 3 1064 513 239 32 26 chr3 62834002 62834157 -96765626 + RLTR42-int LTR ERVK 1198 1353 -4169 4 1064 294 254 55 71 chr3 62834697 62834879 -96764904 + RLTR42-int LTR ERVK 2532 2710 -3427 4 1064 271 48 48 0 chr3 62834932 62834974 -96764809 + RLTR42-int LTR ERVK 2796 2839 -3298 4 1064 338 240 48 91 chr3 62835026 62835191 -96764592 + RLTR42-int LTR ERVK 2866 3023 -3114 4 1064 378 195 0 0 chr3 62835385 62835462 -96764321 + (TA)n Simple_repeat Simple_repeat 1 77 0 4 1064 465 50 0 0 chr3 62835610 62835670 -96764113 + (CA)n Simple_repeat Simple_repeat 2 61 0 4 1064 1484 210 122 0 chr3 62836275 62836594 -96763189 - ORR1B2 LTR MaLR -8 359 2 4 1064 5785 211 73 8 chr3 62836596 62838012 -96761771 - ORR1B2-int LTR MaLR -1 1508 1 4 1064 1182 193 104 173 chr3 62838012 62838406 -96761377 - ORR1B2 LTR MaLR 0 367 1 4 1064 327 324 33 33 chr3 62839108 62839258 -96760525 + RLTR14-int LTR ERV1 4879 5028 -289 4 1064 355 207 112 79 chr3 62839598 62839750 -96760033 + RLTR24 LTR ERV1 6 162 -367 4 1064 299 243 198 72 chr3 62839762 62839984 -96759799 + RLTR24 LTR ERV1 280 529 0 4 1064 194 178 89 0 chr3 62841229 62841274 -96758509 - L2 LINE L2 -609 2810 2762 4 1064 228 224 0 13 chr3 62841422 62841478 -96758305 + T-rich Low_complexity Low_complexity 23 78 0 4 1064 1267 77 70 16 chr3 62841478 62841663 -96758120 - B2_Mm2 SINE B2 0 195 1 4 1064 228 224 0 13 chr3 62841663 62841683 -96758100 + T-rich Low_complexity Low_complexity 4 22 0 4 1064 180 0 0 0 chr3 62841945 62841965 -96757818 + (GGGA)n Simple_repeat Simple_repeat 3 22 0 4 1064 1104 107 0 0 chr3 62841967 62842286 -96757497 + (GA)n Simple_repeat Simple_repeat 1 319 0 4 1064 519 316 6 61 chr3 62843278 62843443 -96756340 + RSINE1 SINE B4 10 165 0 4 1064 283 286 0 13 chr3 62844120 62844198 -96755585 - ID4_ SINE ID -2 81 5 4 1064 33 73 0 0 chr3 62844231 62844299 -96755484 + AT_rich Low_complexity Low_complexity 1 68 0 4 1064 238 319 14 0 chr3 62844573 62844642 -96755141 + ID4_ SINE ID 4 73 -10 4 1064 209 33 33 0 chr3 62844649 62844679 -96755104 + (CAGA)n Simple_repeat Simple_repeat 2 32 0 4 1064 324 70 0 0 chr3 62844772 62844815 -96754968 + (TG)n Simple_repeat Simple_repeat 2 44 0 4 1064 24 53 0 0 chr3 62844815 62844853 -96754930 + AT_rich Low_complexity Low_complexity 1 38 0 4 1064 4086 105 91 42 chr3 62845430 62845835 -96753948 - RMER17A LTR ERVK 0 751 347 4 1064 1255 23 29 0 chr3 62845835 62846006 -96753777 + (GGAGA)n Simple_repeat Simple_repeat 2 177 0 4 1064 4086 105 91 42 chr3 62846006 62846316 -96753467 - RMER17A LTR ERVK -405 346 1 4 1064 1037 260 61 38 chr3 62846336 62846843 -96752940 - L1MA4 LINE L1 -1155 5903 5416 4 1064 577 323 158 21 chr3 62847082 62847373 -96752410 - MLT1A0 LTR MaLR -5 360 30 4 1064 183 341 51 71 chr3 62848868 62848966 -96750817 + L2 LINE L2 2813 2908 -511 4 1064 383 295 98 0 chr3 62849486 62849598 -96750185 + B3 SINE B2 48 170 -46 4 1064 231 152 0 0 chr3 62849666 62849712 -96750071 + (TA)n Simple_repeat Simple_repeat 1 46 0 4 1064 289 195 63 29 chr3 62849752 62849926 -96749857 + (TA)n Simple_repeat Simple_repeat 1 180 0 4 1064 535 276 56 7 chr3 62850430 62850572 -96749211 - RSINE1 SINE B4 -16 149 1 4 1064 403 254 41 25 chr3 62851399 62851520 -96748263 - MLT1A1 LTR MaLR -4 404 282 4 1064 2463 39 0 10 chr3 62851618 62851972 -96747811 - L1Md_F3 LINE L1 0 6584 6274 4 1064 216 86 0 0 chr3 62852392 62852427 -96747356 + (A)n Simple_repeat Simple_repeat 1 35 0 4 1064 203 200 0 0 chr3 62852428 62852463 -96747320 + polypurine Low_complexity Low_complexity 3 37 0 4 1064 1104 223 138 0 chr3 62853537 62853820 -96745963 - Lx6 LINE L1 -4 7456 7135 4 1064 543 81 0 0 chr3 62853818 62853892 -96745891 - L1Md_F2 LINE L1 -230 5653 5580 4 1064 6648 64 36 18 chr3 62853892 62854799 -96744984 + L1Md_F2 LINE L1 5658 6581 -1 4 1064 754 246 12 12 chr3 62854808 62854981 -96744802 - Lx6 LINE L1 -311 7149 6977 4 1064 12601 174 77 46 chr3 62854973 62855197 -96744586 - L1_Mur3 LINE L1 -1278 4602 4378 4 1064 5567 156 16 13 chr3 62855197 62856213 -96743570 + RLTR13D2 LTR ERVK 1 1019 -4 4 1064 12601 174 77 46 chr3 62856213 62856367 -96743416 - L1_Mur3 LINE L1 -1503 4377 4299 4 1064 717 223 0 20 chr3 62856367 62856518 -96743265 - B1_Mur2 SINE Alu -1 148 1 4 1064 12601 174 77 46 chr3 62856518 62858640 -96741143 - L1_Mur3 LINE L1 -1582 4298 2081 4 1064 291 93 0 0 chr3 62858640 62858683 -96741100 + (TGG)n Simple_repeat Simple_repeat 1 43 0 4 1064 12601 219 79 30 chr3 62858683 62860704 -96739079 - L1_Mur3 LINE L1 -3800 2080 29 4 1064 1648 263 64 8 chr3 62860712 62861225 -96738558 - L1_Mur3 LINE L1 -6694 1018 477 4 1064 945 298 57 3 chr3 62861224 62861574 -96738209 - L1_Mur3 LINE L1 -7042 670 302 4 1064 296 310 20 0 chr3 62862785 62862885 -96736898 + (CATA)n Simple_repeat Simple_repeat 4 105 0 4 1064 21 0 0 0 chr3 62863362 62863383 -96736400 + AT_rich Low_complexity Low_complexity 1 21 0 4 1064 345 333 52 89 chr3 62863387 62863522 -96736261 + B4A SINE B4 20 149 -143 4 1064 206 271 0 50 chr3 62863776 62863877 -96735906 + A-rich Low_complexity Low_complexity 5 100 0 4 1064 1162 218 265 18 chr3 62864327 62864663 -96735120 + MTD LTR MaLR 1 419 0 4 1064 182 373 40 0 chr3 62864832 62864907 -96734876 + MIRb SINE MIR 190 267 -1 4 1064 351 0 0 0 chr3 62865101 62865140 -96734643 + (CA)n Simple_repeat Simple_repeat 2 40 0 4 1064 615 226 8 45 chr3 62865657 62865791 -96733992 + B1_Mur3 SINE Alu 1 129 -20 4 1064 1144 88 0 0 chr3 62866141 62866289 -96733494 - B1_Mus1 SINE Alu 0 148 1 4 1064 185 254 93 53 chr3 62866369 62866444 -96733339 + L3 LINE CR1 728 805 -3684 4 1064 191 302 116 0 chr3 62866771 62866857 -96732926 + L2c LINE L2 3271 3366 -21 4 1064 1109 65 0 0 chr3 62867025 62867163 -96732620 + B1_Mus2 SINE Alu 1 138 -9 4 1064 252 77 0 0 chr3 62867279 62867318 -96732465 + (GA)n Simple_repeat Simple_repeat 2 40 0 4 1064 1691 198 9 104 chr3 62867657 62868097 -96731686 + RMER10B LTR ERVL 1 398 0 4 1064 6305 83 15 5 chr3 62868450 62869326 -96730457 + L1_Mus3 LINE L1 5751 6635 -3 4 1064 2150 114 83 0 chr3 62869329 62869689 -96730094 + L1Md_F LINE L1 461 850 -5669 4 1064 1214 73 11 6 chr3 62869686 62869865 -96729918 - L1Md_F LINE L1 -5493 1026 847 4 1064 2059 72 48 0 chr3 62869860 62870153 -96729630 + L1_Mm LINE L1 5359 5665 -218 4 1064 1251 98 49 0 chr3 62870153 62870356 -96729427 + L1Md_F2 LINE L1 6370 6582 0 4 1064 254 167 0 0 chr3 62870472 62870514 -96729269 + GA-rich Low_complexity Low_complexity 3 44 0 4 1064 621 144 0 0 chr3 62870514 62870618 -96729165 + (GGGA)n Simple_repeat Simple_repeat 3 106 0 4 1064 249 231 84 42 chr3 62870719 62870814 -96728969 + MTC-int LTR MaLR 910 1008 -250 4 1064 1268 202 95 91 chr3 62870878 62871460 -96728323 + RLTR19-int LTR ERVK 2451 3004 -3133 4 1064 305 211 112 25 chr3 62871834 62871976 -96727807 + RLTR19-int LTR ERVK 3871 3962 -2175 4 1064 1253 266 131 88 chr3 62871982 62872587 -96727196 - RLTR26 LTR ERVK -11 631 1 4 1064 396 0 0 0 chr3 62872732 62872776 -96727007 + (TG)n Simple_repeat Simple_repeat 2 45 0 4 1064 284 264 74 8 chr3 62872870 62872992 -96726791 + RLTR19-int LTR ERVK 3032 3161 -77 4 1064 1089 208 102 136 chr3 62873121 62873533 -96726250 - RMER10B LTR ERVL 0 398 1 4 1064 470 272 0 0 chr3 62873910 62874002 -96725781 - PB1D7 SINE Alu -23 97 6 4 1064 416 262 6 0 chr3 62874023 62874191 -96725592 + (TA)n Simple_repeat Simple_repeat 1 169 0 4 1064 181 355 64 11 chr3 62874722 62874816 -96724967 + MIRb SINE MIR 48 146 -122 4 1064 638 248 7 34 chr3 62874852 62874998 -96724785 + ID_B1 SINE B4 8 149 -75 4 1064 633 252 108 44 chr3 62875015 62875173 -96724610 - B3 SINE B2 -47 169 2 4 1064 4044 60 6 2 chr3 62875877 62876392 -96723391 - L1_Mus2 LINE L1 0 6566 6050 4 1064 365 206 0 42 chr3 62876829 62876900 -96722883 + ID4 SINE ID 2 69 -14 4 1064 860 228 19 37 chr3 62876963 62877177 -96722606 - B3 SINE B2 -5 211 2 4 1064 2172 161 49 56 chr3 62877370 62877861 -96721922 + BGLII_B LTR ERVK 1 417 -24 4 1064 1801 156 75 113 chr3 62878346 62878788 -96720995 + RLTR23 LTR ERV1 2 426 -4 4 1064 3751 258 67 3 chr3 62879491 62880493 -96719290 + Lx8 LINE L1 6213 7278 -195 4 1064 237 275 0 0 chr3 62880556 62880625 -96719158 + Lx8 LINE L1 7403 7471 -2 4 1064 432 0 0 0 chr3 62881339 62881387 -96718396 + (TG)n Simple_repeat Simple_repeat 1 48 0 4 1064 2516 215 121 2 chr3 62882605 62883235 -96716548 - Lx6 LINE L1 -27 7433 6729 4 1064 1760 174 50 134 chr3 62883427 62884256 -96715527 - L1_Mur3 LINE L1 -4212 1668 910 4 1064 904 312 35 48 chr3 62884885 62885360 -96714423 - L1_Mur3 LINE L1 -7198 530 59 4 1064 2986 40 0 3 chr3 62885360 62885715 -96714068 - IAPEY2_LTR LTR ERVK -3 354 1 4 1064 904 309 0 93 chr3 62885715 62885800 -96713983 - L1_Mur3 LINE L1 -7670 58 17 4 1064 1742 187 27 92 chr3 62885968 62886380 -96713403 - RLTR41 LTR ERV1 0 446 62 4 1064 1125 62 7 14 chr3 62886766 62886914 -96712869 + B1_Mus1 SINE Alu 2 148 0 4 1064 437 219 9 0 chr3 62887128 62887242 -96712541 + (TA)n Simple_repeat Simple_repeat 2 116 0 4 1064 1763 181 21 58 chr3 62887317 62887699 -96712084 + ORR1D1 LTR MaLR 1 368 -6 4 1064 585 280 41 15 chr3 62887948 62888130 -96711653 - B3A SINE B2 -8 190 1 4 1064 832 109 7 14 chr3 62891263 62891403 -96708380 + (GAAA)n Simple_repeat Simple_repeat 4 142 0 4 1064 213 154 0 0 chr3 62891446 62891485 -96708298 + (CAGA)n Simple_repeat Simple_repeat 2 40 0 4 1064 32 75 0 0 chr3 62892094 62892161 -96707622 + AT_rich Low_complexity Low_complexity 1 67 0 4 1064 1649 216 52 3 chr3 62893331 62893697 -96706086 - ORR1C2 LTR MaLR 0 384 1 4 1064 1515 233 67 163 chr3 62894007 62894683 -96705100 - RMER19C LTR ERVK 0 611 1 4 1064 2900 66 31 19 chr3 62894802 62895218 -96704565 + BGLII LTR ERVK 1 421 0 4 1064 41 48 0 0 chr3 62897381 62897443 -96702340 + AT_rich Low_complexity Low_complexity 1 62 0 4 1064 2055 178 34 14 chr3 62897446 62897863 -96701920 - Lx4B LINE L1 -836 6222 5798 4 1064 3804 151 10 26 chr3 62897836 62898536 -96701247 - L1_Mur2 LINE L1 -1585 4292 3604 4 1064 32191 80 18 9 chr3 62898531 62899972 -96699811 - Lx3_Mus LINE L1 -920 6089 4644 4 1064 270 0 0 0 chr3 62899972 62900002 -96699781 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 4 1064 32191 81 34 12 chr3 62900002 62903827 -96695956 - Lx3_Mus LINE L1 -1243 4643 710 4 1064 417 211 11 0 chr3 62903822 62903917 -96695866 - Lx3_Mus LINE L1 -6885 99 4 4 1064 1987 306 91 28 chr3 62903919 62904493 -96695290 - L1_Mur3 LINE L1 -6800 912 281 4 1064 2676 110 36 3 chr3 62904493 62904884 -96694899 - MTB_Mm LTR MaLR -3 404 1 4 1064 1987 295 49 12 chr3 62904884 62905194 -96694589 - L1_Mur3 LINE L1 -7432 280 1 4 1064 2077 240 39 14 chr3 62905208 62905702 -96694081 + RMER20A LTR ERVK 11 516 0 5 1064 297 278 129 9 chr3 62905703 62905819 -96693964 - L1_Mur3 LINE L1 -7260 452 323 4 1064 1595 267 90 13 chr3 62905868 62906558 -96693225 + L1MC1 LINE L1 4359 5101 -1045 5 1064 1826 210 56 19 chr3 62906572 62906984 -96692799 - Lx9 LINE L1 -229 7415 6989 5 1064 715 115 34 103 chr3 62906974 62907075 -96692708 + Lx9 LINE L1 7449 7532 -112 5 1064 576 65 0 0 chr3 62907075 62907152 -96692631 + (GAAA)n Simple_repeat Simple_repeat 2 78 0 5 1064 715 115 34 103 chr3 62907152 62907254 -96692529 + Lx9 LINE L1 7533 7638 -6 5 1064 293 47 23 0 chr3 62907744 62907787 -96691996 + (TTTG)n Simple_repeat Simple_repeat 1 44 0 5 1064 965 128 28 0 chr3 62907788 62907929 -96691854 - B1_Mus1 SINE Alu -2 146 2 5 1064 1424 311 72 26 chr3 62908096 62909165 -96690618 + L1MC1 LINE L1 5085 6203 -130 5 1064 551 254 78 57 chr3 62910580 62910772 -96689011 + RMER13A LTR ERVK 98 293 -567 5 1064 447 19 0 0 chr3 62910776 62910828 -96688955 + (TG)n Simple_repeat Simple_repeat 2 53 0 5 1064 303 293 222 0 chr3 62911333 62911500 -96688283 - MTE-int LTR MaLR -27 1553 1350 5 1064 272 337 29 10 chr3 62911554 62911656 -96688127 - MTE-int LTR MaLR -1466 114 11 5 1064 291 113 0 0 chr3 62911778 62911831 -96687952 + (T)n Simple_repeat Simple_repeat 1 53 0 5 1064 1135 68 0 0 chr3 62911831 62911978 -96687805 - B1_Mus2 SINE Alu 0 147 1 5 1064 1196 200 4 4 chr3 62912140 62912371 -96687412 + L1Md_A LINE L1 104 334 -6282 5 1064 1200 58 7 0 chr3 62912363 62912517 -96687266 + L1Md_A LINE L1 670 824 -5792 5 16 33731 32 3 0 chr3 62912514 62916620 -96683163 + L1Md_A LINE L1 1470 5586 -297 5 1065 8217 34 17 0 chr3 62916620 62917598 -96682185 + L1Md_A LINE L1 5587 6581 -1 5 1065 227 395 5 73 chr3 62917619 62917824 -96681959 + RMER4B LTR ERVK 35 225 -360 5 1065 425 287 19 0 chr3 62917949 62918057 -96681726 - MTE2b LTR MaLR -267 112 3 5 1065 183 282 0 0 chr3 62918605 62918644 -96681139 + MIRm SINE MIR 221 259 -17 5 1065 574 347 51 27 chr3 62918728 62919063 -96680720 + MLT1A0 LTR MaLR 23 365 0 5 1065 270 0 0 0 chr3 62919682 62919712 -96680071 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 5 1065 25 51 0 0 chr3 62919810 62919849 -96679934 + AT_rich Low_complexity Low_complexity 1 39 0 5 1065 778 297 21 94 chr3 62919902 62919934 -96679849 - MTD LTR MaLR 0 419 395 5 1065 1629 199 27 19 chr3 62919934 62920302 -96679481 - ORR1D1 LTR MaLR -3 371 1 5 1065 778 297 21 94 chr3 62920302 62920382 -96679401 - MTD LTR MaLR -25 394 329 5 1065 186 43 0 0 chr3 62920382 62920405 -96679378 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 5 1065 778 297 21 94 chr3 62920405 62920621 -96679162 - MTD LTR MaLR -91 328 114 5 1065 760 285 42 47 chr3 62920621 62920982 -96678801 + RLTR15 LTR ERVK 1 359 0 5 1065 557 233 8 8 chr3 62920982 62921101 -96678682 - MTD LTR MaLR -300 119 1 5 1065 660 109 59 0 chr3 62921129 62921230 -96678553 - BC1_Mm scRNA scRNA -45 107 1 5 1065 420 37 0 0 chr3 62922873 62922927 -96676856 + (CA)n Simple_repeat Simple_repeat 1 54 0 5 1065 362 238 112 0 chr3 62923169 62923249 -96676534 - B3 SINE B2 -86 130 42 5 1065 1303 227 137 44 chr3 62923218 62923586 -96676197 + RLTR20A LTR ERVK 58 436 -105 5 1065 429 76 0 0 chr3 62923586 62923652 -96676131 + (TG)n Simple_repeat Simple_repeat 2 67 0 5 1065 1303 222 148 44 chr3 62923652 62923748 -96676035 + RLTR20A LTR ERVK 437 541 0 5 1065 12130 109 21 10 chr3 62923798 62926485 -96673298 + L1VL2 LINE L1 85 2805 -810 5 1065 1979 96 11 0 chr3 62926484 62926766 -96673017 + L1_Mm LINE L1 4329 4613 -1270 5 1065 5826 67 7 4 chr3 62926767 62927528 -96672255 + L1_Mus1 LINE L1 5804 6566 -1 5 1065 312 27 0 0 chr3 62927547 62927584 -96672199 + (TG)n Simple_repeat Simple_repeat 1 37 0 5 1065 498 33 0 0 chr3 62927584 62927643 -96672140 + (GA)n Simple_repeat Simple_repeat 1 60 0 5 1065 3193 156 5 12 chr3 62928365 62928941 -96670842 - L1_Mur2 LINE L1 -1176 4701 4130 5 1065 2654 223 63 9 chr3 62928939 62930003 -96669780 + Lx5 LINE L1 5835 7050 0 5 1065 850 151 12 6 chr3 62930045 62930212 -96669571 + GA-rich Low_complexity Low_complexity 2 169 0 5 1065 286 176 39 0 chr3 62930225 62930276 -96669507 + B1_Mus2 SINE Alu 40 92 -55 5 1065 246 298 29 78 chr3 62930232 62930334 -96669449 + RLTR25A LTR ERVK 523 619 -484 5 1065 284 78 39 0 chr3 62930649 62930700 -96669083 + (TCTCTG)n Simple_repeat Simple_repeat 2 54 0 5 1065 453 19 0 0 chr3 62930701 62930755 -96669028 + (TG)n Simple_repeat Simple_repeat 1 54 0 5 1065 633 106 0 0 chr3 62931497 62931610 -96668173 + (TAGA)n Simple_repeat Simple_repeat 4 116 0 5 1065 993 182 96 57 chr3 62932013 62932327 -96667456 - Lx9 LINE L1 -1 7643 7318 5 1065 402 195 0 0 chr3 62932325 62932402 -96667381 + Lx9 LINE L1 7194 7270 -374 5 1065 508 270 27 13 chr3 62933199 62933349 -96666434 + L1MCa LINE L1 430 581 -5927 5 1065 282 286 35 35 chr3 62933368 62933484 -96666299 + L1MCa LINE L1 559 674 -5834 5 1065 861 324 28 12 chr3 62933522 62933844 -96665939 + Lx8 LINE L1 7085 7411 -62 5 1065 437 0 19 0 chr3 62934053 62934106 -96665677 + (TC)n Simple_repeat Simple_repeat 1 54 0 5 1065 22 0 0 0 chr3 62935100 62935122 -96664661 + AT_rich Low_complexity Low_complexity 1 22 0 5 1065 230 290 39 29 chr3 62935187 62935290 -96664493 - L1M2 LINE L1 -492 5799 5696 5 1065 400 216 75 0 chr3 62935387 62935521 -96664262 + L1MCa LINE L1 1750 1893 -4615 5 1065 1348 254 123 62 chr3 62935598 62936310 -96663473 + RMER19B LTR ERVK 1 900 -2 5 1065 402 250 20 0 chr3 62936353 62936453 -96663330 + L1MCa LINE L1 2013 2114 -4394 5 1065 921 169 124 0 chr3 62936461 62936638 -96663145 - URR1A DNA MER1_type -27 199 1 5 1065 3566 235 39 57 chr3 62936753 62937198 -96662585 + RMER1A Other Other 205 589 -477 5 1065 1638 31 0 0 chr3 62937198 62937390 -96662393 + B2_Mm1t SINE B2 1 192 -1 5 1065 3566 191 27 59 chr3 62937390 62937905 -96661878 + RMER1A Other Other 532 1030 0 5 1065 288 408 40 25 chr3 62937916 62938117 -96661666 - L1M2a LINE L1 -6591 577 374 5 1065 441 233 88 7 chr3 62938451 62938628 -96661155 - L1MCa LINE L1 -3863 2458 2267 5 1065 574 93 0 0 chr3 62938722 62938797 -96660986 + L1_Mur2 LINE L1 5402 5476 -401 5 1065 301 314 18 30 chr3 62939263 62939427 -96660356 + L1M2 LINE L1 2316 2477 -4372 5 1065 494 280 168 21 chr3 62939420 62939610 -96660173 - Lx8 LINE L1 -215 7258 7041 5 1065 517 272 111 55 chr3 62939663 62940103 -96659680 + L1M2 LINE L1 3590 4054 -2788 5 1065 343 339 113 20 chr3 62940166 62940458 -96659325 + L1MCa LINE L1 2976 3294 -3027 5 1065 201 314 174 48 chr3 62942198 62942365 -96657418 + MIRb SINE MIR 3 190 -78 5 1065 545 302 148 18 chr3 62942654 62942985 -96656798 + Kanga1 DNA Tc2 43 417 -1328 5 1065 530 294 125 19 chr3 62943098 62943459 -96656324 + Kanga1 DNA Tc2 1344 1742 -3 5 1065 519 313 55 25 chr3 62943524 62943724 -96656059 - ID_B1 SINE B4 -14 210 5 5 1065 841 219 17 112 chr3 62944149 62944381 -96655402 - B3 SINE B2 -5 211 2 5 1065 228 23 43 43 chr3 62944390 62944436 -96655347 + (TTTTG)n Simple_repeat Simple_repeat 3 48 0 5 1065 315 71 0 0 chr3 62944983 62945025 -96654758 + (TG)n Simple_repeat Simple_repeat 1 42 0 5 1065 1094 157 9 32 chr3 62945666 62945883 -96653900 - Lx4A LINE L1 0 7058 6847 5 1065 207 0 0 0 chr3 62945983 62946006 -96653777 + (A)n Simple_repeat Simple_repeat 1 23 0 5 1065 1303 278 23 39 chr3 62947802 62948187 -96651596 + MTEa LTR MaLR 1 379 0 5 1065 534 327 30 5 chr3 62948897 62949097 -96650686 + MIRc SINE MIR 63 267 -1 5 1065 272 300 83 91 chr3 62949108 62949229 -96650554 - LTR88a LTR Gypsy 0 816 697 5 1065 25 31 0 0 chr3 62949909 62949941 -96649842 + AT_rich Low_complexity Low_complexity 1 32 0 5 1065 228 111 0 0 chr3 62950502 62950538 -96649245 + (CA)n Simple_repeat Simple_repeat 2 37 0 5 1065 27 0 0 0 chr3 62952129 62952156 -96647627 + AT_rich Low_complexity Low_complexity 1 27 0 5 1065 1035 204 24 10 chr3 62952198 62952406 -96647377 + B3 SINE B2 1 211 -5 5 1065 269 273 0 0 chr3 62952834 62952889 -96646894 + Lx8 LINE L1 7170 7224 -249 5 1065 28 48 0 0 chr3 62953087 62953129 -96646654 + AT_rich Low_complexity Low_complexity 1 42 0 5 1065 704 80 0 0 chr3 62954760 62954860 -96644923 + L1_Mus2 LINE L1 6467 6566 0 5 1065 396 312 27 20 chr3 62954995 62955142 -96644641 + B1F SINE Alu 2 149 0 5 1065 462 139 0 0 chr3 62955645 62955731 -96644052 + (TG)n Simple_repeat Simple_repeat 1 86 0 5 1065 821 309 138 35 chr3 62955750 62956068 -96643715 - ORR1D2 LTR MaLR 0 370 20 5 1065 21 0 0 0 chr3 62956277 62956298 -96643485 + AT_rich Low_complexity Low_complexity 1 21 0 5 1065 377 312 57 40 chr3 62957956 62958133 -96641650 + MER20 DNA MER1_type 38 217 -2 5 1065 1372 74 0 16 chr3 62958178 62958370 -96641413 - MTA_Mm LTR MaLR 0 396 208 5 1065 3223 70 142 7 chr3 62958373 62958830 -96640953 + MURVY-LTR LTR ERV1 1 519 0 5 1065 4359 279 55 51 chr3 62958830 62961482 -96638301 + MuRRS4-int LTR ERV1 3 2813 -4743 5 1065 6855 281 15 13 chr3 62961482 62963599 -96636184 + MuRRS4-int LTR ERV1 2152 4272 -791 5 1065 1808 64 203 17 chr3 62963888 62964189 -96635594 + MURVY-LTR LTR ERV1 3 359 -160 5 1065 696 55 0 11 chr3 62964189 62964280 -96635503 - MTA_Mm LTR MaLR -306 90 1 5 1065 446 307 75 154 chr3 62964350 62964505 -96635278 - MLT1H LTR MaLR -205 344 221 5 1065 252 0 0 0 chr3 62964505 62964533 -96635250 + (GA)n Simple_repeat Simple_repeat 2 29 0 5 1065 446 307 75 154 chr3 62964533 62964643 -96635140 - MLT1H LTR MaLR -329 220 100 5 1065 195 69 0 0 chr3 62964741 62964770 -96635013 + (GA)n Simple_repeat Simple_repeat 2 30 0 5 1065 308 359 78 62 chr3 62964945 62965292 -96634491 - MTD LTR MaLR -48 371 1 5 1065 252 208 13 65 chr3 62965292 62965369 -96634414 + L1MA5 LINE L1 5868 5940 -360 5 1065 1009 164 45 0 chr3 62965987 62966164 -96633619 + B2_Mm2 SINE B2 1 185 -10 5 1065 230 0 0 32 chr3 62966720 62966751 -96633032 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 5 1065 25 31 0 0 chr3 62966849 62966881 -96632902 + AT_rich Low_complexity Low_complexity 1 32 0 5 1065 419 219 46 37 chr3 62968367 62968476 -96631307 + MTEb LTR MaLR 262 371 -8 5 1065 582 274 7 7 chr3 62968537 62968684 -96631099 + B1_Mur1 SINE Alu 1 147 -2 5 1065 206 116 0 23 chr3 62968686 62968730 -96631053 + (CAAAA)n Simple_repeat Simple_repeat 2 44 0 5 1065 579 227 53 0 chr3 62968731 62968881 -96630902 + L1MA5 LINE L1 6137 6294 -6 5 1065 229 122 61 0 chr3 62968977 62969026 -96630757 + A-rich Low_complexity Low_complexity 2 53 0 5 1065 722 276 5 84 chr3 62969049 62969251 -96630532 + B4A SINE B4 107 292 0 5 1065 339 25 0 0 chr3 62969269 62969309 -96630474 + (CA)n Simple_repeat Simple_repeat 1 40 0 5 1065 711 302 39 31 chr3 62969488 62969717 -96630066 - 7SK RNA RNA -98 233 3 5 1065 279 0 0 0 chr3 62970172 62970203 -96629580 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 5 1065 2089 152 32 11 chr3 62970905 62971278 -96628505 - RLTR14 LTR ERV1 -1 381 1 6 1065 8014 166 66 32 chr3 62971278 62972990 -96626793 - RLTR14-int LTR ERV1 0 5317 3548 6 1065 2309 174 79 19 chr3 62973001 62973522 -96626261 - RLTR14-int LTR ERV1 -2746 2571 2020 6 1065 1171 88 0 61 chr3 62973575 62973590 -96626193 - B2_Mm2 SINE B2 -24 171 162 6 1065 213 39 0 0 chr3 62973590 62973616 -96626167 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 6 1065 390 21 0 0 chr3 62973619 62973666 -96626117 + (TTAG)n Simple_repeat Simple_repeat 2 48 0 6 1065 1171 88 0 61 chr3 62973666 62973827 -96625956 - B2_Mm2 SINE B2 -34 161 2 6 1065 1420 177 16 0 chr3 62973920 62974174 -96625609 - RLTR14-int LTR ERV1 -3315 2002 1745 6 1065 610 243 7 34 chr3 62976062 62976211 -96623572 + B1F2 SINE Alu 1 145 -4 6 1065 258 240 40 0 chr3 62976553 62976628 -96623155 + ID4 SINE ID 2 79 -4 6 1065 4677 187 59 79 chr3 62977976 62979137 -96620646 - RLTR14-int LTR ERV1 -3611 1706 570 6 1065 198 100 39 39 chr3 62979146 62979198 -96620585 + (TTTG)n Simple_repeat Simple_repeat 2 53 0 6 1065 328 170 95 11 chr3 62979210 62979305 -96620478 - RLTR14-int LTR ERV1 -4768 549 447 6 1065 4293 152 36 1 chr3 62979305 62980091 -96619692 - L1_Mur2 LINE L1 -674 5203 4391 6 1065 1122 132 0 31 chr3 62980097 62980292 -96619491 + Lx2 LINE L1 6805 6993 -4 6 1065 1633 257 44 35 chr3 62980310 62980762 -96619021 - RLTR14-int LTR ERV1 -4861 456 1 6 1065 2179 153 8 23 chr3 62980762 62981150 -96618633 - RLTR14 LTR ERV1 0 382 1 6 1065 255 93 0 0 chr3 62982411 62982454 -96617329 + (TC)n Simple_repeat Simple_repeat 2 44 0 6 1065 198 103 0 0 chr3 62982454 62982483 -96617300 + (CA)n Simple_repeat Simple_repeat 1 29 0 6 1065 1073 136 20 25 chr3 62982723 62982919 -96616864 + B2_Mm2 SINE B2 1 195 0 6 1065 482 171 40 33 chr3 62983362 62983513 -96616270 - Lx9 LINE L1 -2 7642 7491 6 1065 3137 164 4 2 chr3 62983617 62984180 -96615603 + L1_Mm LINE L1 5132 5695 -188 6 1065 27 0 0 0 chr3 62984343 62984370 -96615413 + AT_rich Low_complexity Low_complexity 1 27 0 6 1065 1090 86 0 0 chr3 62985226 62985366 -96614417 + B1_Mus1 SINE Alu 2 141 -7 6 1065 236 30 30 0 chr3 62985683 62985716 -96614067 + (CA)n Simple_repeat Simple_repeat 1 34 0 6 1065 387 0 0 0 chr3 62987149 62987192 -96612591 + (TC)n Simple_repeat Simple_repeat 1 43 0 6 1065 1764 224 59 106 chr3 62987368 62987943 -96611840 + RMER20B LTR ERVK 14 561 -66 6 1065 248 405 53 0 chr3 62987948 62988079 -96611704 + L2b LINE L2 3238 3375 0 6 1065 1744 186 5 110 chr3 62988136 62988307 -96611476 - ORR1B2 LTR MaLR 0 367 211 6 1065 1119 59 0 0 chr3 62988307 62988443 -96611340 + B1_Mus2 SINE Alu 3 138 -9 6 1065 1744 186 5 110 chr3 62988443 62988681 -96611102 - ORR1B2 LTR MaLR -157 210 1 6 1065 2749 183 74 86 chr3 62988681 62989109 -96610674 - ORR1B2-int LTR MaLR 0 1509 1100 6 1065 4675 59 14 0 chr3 62989109 62989688 -96610095 + LTRIS_Mus LTR ERV1 1 587 0 6 1065 2749 183 74 86 chr3 62989688 62989965 -96609818 - ORR1B2-int LTR MaLR -410 1099 813 6 1065 1270 66 21 27 chr3 62989957 62990143 -96609640 - B2_Mm2 SINE B2 -3 192 8 6 1065 3165 195 61 24 chr3 62990141 62990924 -96608859 - ORR1B2-int LTR MaLR -696 813 2 6 1065 1747 208 11 11 chr3 62990929 62991288 -96608495 - ORR1B2 LTR MaLR -8 359 1 6 1065 208 0 62 0 chr3 62991351 62991383 -96608400 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 6 1065 248 315 133 27 chr3 62993020 62993170 -96606613 - MIR SINE MIR -43 219 54 6 1065 180 273 0 0 chr3 62993285 62993362 -96606421 + (TATATG)n Simple_repeat Simple_repeat 6 82 0 6 1065 287 291 103 11 chr3 62994254 62994340 -96605443 + B4 SINE B4 2 95 -197 6 1065 484 276 43 0 chr3 62994340 62994456 -96605327 + RSINE1 SINE B4 3 123 -42 6 1065 2705 196 45 14 chr3 62994557 62995112 -96604671 + RMER15 LTR ERVL 4 575 0 6 1065 473 245 11 11 chr3 62995117 62995212 -96604571 + B4 SINE B4 88 182 -110 6 1065 387 234 0 0 chr3 62996449 62996526 -96603257 - Lx8 LINE L1 -132 7341 7265 6 1065 2538 84 84 5 chr3 62996526 62996897 -96602886 - MTB LTR MaLR 0 400 1 6 1065 2616 123 80 26 chr3 62996897 62997447 -96602336 - MTB-int LTR MaLR 0 1258 618 6 1065 1406 261 50 24 chr3 62997447 62997910 -96601873 - Lx8 LINE L1 -343 7130 6656 6 1065 1230 299 58 27 chr3 62998265 62998815 -96600968 + Lx8 LINE L1 6087 6653 -820 6 1065 3745 31 9 0 chr3 62998856 62999300 -96600483 - L1Md_F3 LINE L1 -2 6582 6135 6 1065 439 155 0 0 chr3 62999928 62999999 -96599784 + B2_Mm2 SINE B2 4 74 -121 6 1065 594 119 28 56 chr3 63000000 63000107 -96599676 + B2_Mm2 SINE B2 76 179 -16 1 1065 588 29 0 0 chr3 63000109 63000179 -96599604 + (GGA)n Simple_repeat Simple_repeat 3 72 0 2 1065 422 344 56 15 chr3 63001868 63002063 -96597720 - MLT1B LTR MaLR 0 390 188 3 1065 466 340 15 56 chr3 63002396 63002592 -96597191 + MER2 DNA MER2_type 155 342 -3 4 1065 356 0 23 0 chr3 63003116 63003160 -96596623 + (TG)n Simple_repeat Simple_repeat 2 46 0 5 1065 981 117 0 7 chr3 63003566 63003704 -96596079 + B1_Mur3 SINE Alu 3 139 -10 6 1065 305 93 0 18 chr3 63003706 63003761 -96596022 + (TAAA)n Simple_repeat Simple_repeat 3 56 0 7 1065 181 65 29 103 chr3 63003754 63003822 -96595961 + A-rich Low_complexity Low_complexity 3 65 0 8 1065 821 270 22 65 chr3 63003826 63004056 -96595727 + B4A SINE B4 1 220 -72 9 1065 619 331 71 45 chr3 63004220 63004447 -96595336 + B4A SINE B4 6 244 -48 1 1065 595 261 58 37 chr3 63004447 63004638 -96595145 + B3A SINE B2 4 198 0 1 1065 619 331 71 45 chr3 63004638 63004676 -96595107 + B4A SINE B4 245 278 -14 1 1065 35426 18 0 0 chr3 63006492 63010842 -96588941 + L1Md_A LINE L1 1237 5586 -297 1 1065 8553 29 0 0 chr3 63010842 63011837 -96587946 + L1Md_A LINE L1 5587 6581 -1 1 1065 353 169 221 0 chr3 63011917 63011994 -96587789 + MTC LTR MaLR 1 94 -327 1 1065 3103 201 45 22 chr3 63012004 63012691 -96587092 + RMER1B Other Other 353 1055 -11 1 1065 1370 177 173 4 chr3 63012715 63012987 -96586796 + MTC LTR MaLR 104 421 0 1 1065 274 289 11 57 chr3 63014487 63014575 -96585208 - MLT1G LTR MaLR -305 286 203 1 1065 234 91 0 0 chr3 63014722 63014755 -96585028 + (TTCA)n Simple_repeat Simple_repeat 1 33 0 1 1065 2835 182 95 8 chr3 63014777 63015369 -96584414 - Lx5 LINE L1 -47 7003 6361 1 1065 192 238 0 0 chr3 63015501 63015564 -96584219 + CT-rich Low_complexity Low_complexity 2 64 0 1 1065 27861 110 18 11 chr3 63016358 63022001 -96577782 - L1_Mus2 LINE L1 0 6566 949 1 1065 504 0 0 0 chr3 63022001 63022057 -96577726 + (TTC)n Simple_repeat Simple_repeat 2 57 0 2 1065 2296 194 7 54 chr3 63022057 63022080 -96577703 - L1Md_F LINE L1 -5668 851 851 2 1065 2669 65 21 41 chr3 63022080 63022467 -96577316 - L1Md_F2 LINE L1 0 6582 6204 2 1065 2296 242 62 92 chr3 63022467 63023187 -96576596 - L1_Mus2 LINE L1 -5668 948 220 1 1065 479 382 31 52 chr3 63023425 63023618 -96576165 - B4A SINE B4 -21 271 83 2 1065 7030 144 35 8 chr3 63023629 63024873 -96574910 + RMER12B LTR ERVK 1 1223 -181 2 1065 510 17 0 0 chr3 63024906 63024965 -96574818 + (TATATG)n Simple_repeat Simple_repeat 3 61 0 2 1065 366 176 10 124 chr3 63024970 63025025 -96574758 + RMER12B LTR ERVK 1176 1219 -185 2 1065 345 24 0 0 chr3 63025025 63025067 -96574716 + (TCTG)n Simple_repeat Simple_repeat 4 45 0 2 1065 366 136 8 265 chr3 63025067 63025205 -96574578 + RMER12B LTR ERVK 1172 1269 -135 2 1065 240 381 62 16 chr3 63025225 63025353 -96574430 - B4A SINE B4 -157 135 2 2 1065 216 404 9 9 chr3 63025499 63025614 -96574169 + PB1D10 SINE Alu 3 117 0 2 1065 887 306 156 51 chr3 63026368 63026881 -96572902 + MER21B LTR ERV1 286 852 -11 2 1065 1071 101 0 0 chr3 63026935 63027083 -96572700 + B1_Mus1 SINE Alu 1 148 0 3 1065 648 0 0 0 chr3 63027110 63027182 -96572601 + (GAA)n Simple_repeat Simple_repeat 1 72 0 3 1065 212 330 88 0 chr3 63028387 63028478 -96571305 + MIR3 SINE MIR 65 163 -45 3 1065 237 333 78 0 chr3 63028493 63028595 -96571188 + RSINE1 SINE B4 56 165 0 3 1065 552 30 0 0 chr3 63028620 63028686 -96571097 + (GA)n Simple_repeat Simple_repeat 1 66 0 3 1065 974 319 128 9 chr3 63028694 63029146 -96570637 + Lx8 LINE L1 6822 7327 -146 3 1065 628 156 0 67 chr3 63029161 63029354 -96570429 + (CA)n Simple_repeat Simple_repeat 1 180 0 3 1065 352 291 147 63 chr3 63029753 63030072 -96569711 - MLT1A LTR MaLR 0 374 29 3 1065 1844 204 60 5 chr3 63030551 63030950 -96568833 - MTC LTR MaLR 0 421 1 3 1065 384 313 0 39 chr3 63031073 63031176 -96568607 + PB1D7 SINE Alu 9 107 -13 3 1065 1007 263 117 3 chr3 63031463 63031761 -96568022 + MTE2b LTR MaLR 6 337 -42 4 1065 897 200 204 98 chr3 63031767 63032105 -96567678 + MTEb LTR MaLR 6 379 0 4 1065 725 309 61 70 chr3 63032206 63032551 -96567232 - MER2 DNA MER2_type 0 345 4 4 1065 269 271 46 23 chr3 63032672 63032759 -96567024 - MLT1A0 LTR MaLR -202 163 75 4 1065 305 340 86 33 chr3 63034223 63034433 -96565350 + L3 LINE CR1 4015 4235 -254 4 1065 335 286 88 0 chr3 63034633 63034724 -96565059 - PB1D10 SINE Alu -17 100 2 4 1065 531 0 0 0 chr3 63034811 63034870 -96564913 + (TA)n Simple_repeat Simple_repeat 1 59 0 4 1065 297 0 0 0 chr3 63034870 63034902 -96564881 + (GA)n Simple_repeat Simple_repeat 2 34 0 4 1065 473 29 7 99 chr3 63034989 63035141 -96564642 + (GGGAGA)n Simple_repeat Simple_repeat 3 140 0 4 1065 211 324 92 9 chr3 63035245 63035354 -96564429 + MIR SINE MIR 145 262 0 4 1065 589 281 18 64 chr3 63035669 63035840 -96563943 + RSINE1 SINE B4 3 165 0 5 1065 180 0 0 0 chr3 63035841 63035861 -96563922 + (CAAAA)n Simple_repeat Simple_repeat 5 24 0 5 1065 208 299 29 43 chr3 63036630 63036700 -96563083 + MIRm SINE MIR 205 273 -3 5 1065 257 258 16 0 chr3 63037516 63037578 -96562205 + (TATATG)n Simple_repeat Simple_repeat 4 66 0 5 1065 556 226 40 40 chr3 63037583 63037735 -96562048 - RSINE1 SINE B4 -11 154 3 5 1065 2413 224 130 93 chr3 63038294 63038324 -96561459 - Lx6 LINE L1 0 7460 7434 5 1065 192 40 0 0 chr3 63038324 63038349 -96561434 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 5 1065 2413 224 130 93 chr3 63038349 63038671 -96561112 - Lx6 LINE L1 -27 7433 7116 5 1065 543 31 0 0 chr3 63038671 63038736 -96561047 + (TG)n Simple_repeat Simple_repeat 2 66 0 5 1065 2413 227 138 63 chr3 63038736 63039434 -96560349 - Lx6 LINE L1 -345 7115 6100 5 1065 248 267 93 65 chr3 63040303 63040411 -96559372 + MER117 DNA MER1_type 6 116 -81 5 1065 282 87 0 0 chr3 63040501 63040547 -96559236 + (A)n Simple_repeat Simple_repeat 1 46 0 5 1065 333 0 0 0 chr3 63040628 63040665 -96559118 + (TG)n Simple_repeat Simple_repeat 2 38 0 6 1065 251 203 258 0 chr3 63040750 63040878 -96558905 - L1MA8 LINE L1 -22 6290 6130 6 1065 288 164 61 37 chr3 63040954 63041036 -96558747 - L1MA8 LINE L1 -291 6000 5917 6 1065 431 290 32 75 chr3 63041359 63041580 -96558203 - L1MA8 LINE L1 -382 5921 5707 6 1065 198 298 178 42 chr3 63041731 63041945 -96557838 - L2a LINE L2 -112 3314 3072 6 1065 755 226 55 131 chr3 63042267 63042557 -96557226 - B4A SINE B4 -18 274 7 6 1065 270 252 173 77 chr3 63042638 63042806 -96556977 - MIR SINE MIR -77 185 2 6 1065 398 339 70 84 chr3 63042842 63043225 -96556558 - L2a LINE L2 -1150 2269 1892 6 1065 624 155 0 0 chr3 63043225 63043367 -96556416 + (TG)n Simple_repeat Simple_repeat 2 143 0 6 1065 199 95 0 67 chr3 63043439 63043484 -96556299 + GA-rich Low_complexity Low_complexity 3 44 0 6 1065 259 379 66 31 chr3 63044109 63044368 -96555415 - L2a LINE L2 -1866 1553 1286 6 1065 255 237 0 0 chr3 63044681 63044740 -96555043 + L1MC4 LINE L1 7832 7890 -152 6 1065 1744 169 58 86 chr3 63045120 63045502 -96554281 + RLTR41 LTR ERV1 62 432 -14 6 1066 484 181 8 8 chr3 63045700 63045828 -96553955 + (TA)n Simple_repeat Simple_repeat 2 129 0 6 1066 402 57 0 0 chr3 63045955 63046008 -96553775 + (TTTC)n Simple_repeat Simple_repeat 4 56 0 7 1066 724 184 195 0 chr3 63046335 63046520 -96553263 - URR1B DNA MER1_type 0 225 5 7 1066 2471 183 44 123 chr3 63046906 63047310 -96552473 - RMER20B LTR ERVK 0 627 282 7 1066 3380 30 5 0 chr3 63047310 63047704 -96552079 - MTA_Mm LTR MaLR 0 396 1 7 1066 2471 183 44 123 chr3 63047704 63047980 -96551803 - RMER20B LTR ERVK -346 281 2 7 1066 1480 109 683 36 chr3 63048120 63048235 -96551548 + BGLII_B LTR ERVK 3 190 -251 7 1066 558 43 0 0 chr3 63048235 63048304 -96551479 + (GA)n Simple_repeat Simple_repeat 2 70 0 7 1066 1480 212 45 83 chr3 63048304 63048821 -96550962 + BGLII_B LTR ERVK 96 553 0 7 1066 193 403 42 8 chr3 63048888 63049008 -96550775 - L2a LINE L2 -4 3422 3299 7 1066 700 321 36 30 chr3 63049015 63049317 -96550466 - Arthur1C DNA Tip100 -10 353 50 7 1066 189 0 0 0 chr3 63049429 63049450 -96550333 + (CA)n Simple_repeat Simple_repeat 2 22 0 7 1066 664 312 89 28 chr3 63049479 63050166 -96549617 + L1MB1 LINE L1 5169 5907 -261 7 1066 21 36 0 0 chr3 63050327 63050355 -96549428 + AT_rich Low_complexity Low_complexity 1 28 0 8 1066 1140 82 0 0 chr3 63050357 63050504 -96549279 - B1_Mus2 SINE Alu 0 147 1 8 1066 1841 170 16 89 chr3 63050561 63050704 -96549079 + ORR1B1 LTR MaLR 42 174 -220 8 1066 3835 57 4 76 chr3 63050704 63051256 -96548527 - RLTR1B LTR ERV1 0 512 1 8 1066 1841 170 16 89 chr3 63051256 63051493 -96548290 + ORR1B1 LTR MaLR 175 394 0 8 1066 1242 154 18 0 chr3 63051630 63051850 -96547933 - URR1A DNA MER1_type -2 224 1 8 1066 16064 180 125 29 chr3 63052263 63055575 -96544208 - Lx6 LINE L1 -1353 6107 2403 8 1066 378 42 0 0 chr3 63055575 63055623 -96544160 + (TG)n Simple_repeat Simple_repeat 1 48 0 8 1066 16064 179 130 29 chr3 63055623 63055945 -96543838 - Lx6 LINE L1 -3478 2402 2056 8 1066 231 114 0 0 chr3 63055945 63055980 -96543803 + (TG)n Simple_repeat Simple_repeat 2 36 0 8 1066 16064 232 108 26 chr3 63055980 63057833 -96541950 - Lx6 LINE L1 -3825 2055 104 8 1066 326 189 38 0 chr3 63058286 63058339 -96541444 - ID4 SINE ID -11 72 18 8 1066 217 266 78 0 chr3 63058288 63058352 -96541431 - B4 SINE B4 -221 71 3 8 1066 7256 82 23 2 chr3 63058459 63059571 -96540212 - L1_Mus3 LINE L1 -9 6629 5497 9 1066 2245 112 6 0 chr3 63059569 63059925 -96539858 + L1_Mus3 LINE L1 5156 5513 -370 9 1066 14145 73 7 3 chr3 63060282 63062946 -96536837 - L1Md_F2 LINE L1 -4 6578 3904 9 1066 8754 92 34 11 chr3 63062943 63065040 -96534743 - L1Md_F2 LINE L1 -3356 2527 380 9 1066 890 8 34 0 chr3 63065176 63065295 -96534488 + (TCTA)n Simple_repeat Simple_repeat 3 125 0 9 1066 711 259 56 10 chr3 63065296 63065491 -96534292 - B3 SINE B2 -12 204 1 9 1066 1147 89 0 6 chr3 63065520 63065679 -96534104 + B2_Mm2 SINE B2 1 158 -37 9 1066 318 67 0 0 chr3 63065679 63065724 -96534059 + (TAAA)n Simple_repeat Simple_repeat 2 46 0 9 1066 403 234 57 11 chr3 63066964 63067141 -96532642 - L1M4 LINE L1 -3056 3090 2906 9 1066 2404 92 3 0 chr3 63067693 63068019 -96531764 + ORR1A2 LTR MaLR 1 327 0 9 1066 672 317 65 25 chr3 63068572 63068847 -96530936 + RMER15 LTR ERVL 274 559 -16 9 1066 347 209 35 0 chr3 63068900 63069015 -96530768 + GA-rich Low_complexity Low_complexity 2 120 0 9 1066 913 139 42 6 chr3 63069082 63069248 -96530535 - ORR1A4-int LTR MaLR -1337 172 1 1 1066 1813 115 16 150 chr3 63069248 63069323 -96530460 - ORR1A4 LTR MaLR 0 329 288 1 1066 1178 75 0 0 chr3 63069323 63069470 -96530313 - B1_Mm SINE Alu 0 147 1 1 1066 1813 115 16 150 chr3 63069470 63069774 -96530009 - ORR1A4 LTR MaLR -42 287 1 1 1066 210 277 129 41 chr3 63071580 63071727 -96528056 - MIR SINE MIR -67 195 36 1 1066 186 294 152 29 chr3 63072449 63072554 -96527229 + MIR3 SINE MIR 83 200 -8 1 1066 271 314 20 74 chr3 63072668 63072816 -96526967 - MLT1A LTR MaLR -8 366 227 1 1066 570 278 26 26 chr3 63072828 63072983 -96526800 - MLT1A LTR MaLR -206 168 14 1 1066 495 235 41 105 chr3 63073131 63073302 -96526481 - RSINE1 SINE B4 -4 161 2 1 1066 362 292 57 42 chr3 63073444 63073708 -96526075 - L1MEg LINE L1 -1793 4353 4086 1 1066 25 51 0 0 chr3 63073745 63073784 -96525999 + AT_rich Low_complexity Low_complexity 1 39 0 1 1066 471 35 0 0 chr3 63073788 63073845 -96525938 + (TG)n Simple_repeat Simple_repeat 2 58 0 1 1066 272 70 0 23 chr3 63073847 63073891 -96525892 + (GGGA)n Simple_repeat Simple_repeat 2 44 0 1 1066 389 296 112 0 chr3 63073903 63074028 -96525755 - RSINE1 SINE B4 -22 143 5 1 1066 2970 88 7 9 chr3 63074178 63074600 -96525183 - BGLII LTR ERVK 0 421 1 1 1066 632 149 0 16 chr3 63075127 63075250 -96524533 + CT-rich Low_complexity Low_complexity 2 122 0 1 1066 291 267 86 0 chr3 63075283 63075388 -96524395 - L1MEg LINE L1 -4955 1287 1174 1 1066 431 347 46 46 chr3 63075523 63075737 -96524046 - L1MEg LINE L1 -5296 946 735 1 1066 243 0 0 0 chr3 63075737 63075764 -96524019 + (TA)n Simple_repeat Simple_repeat 2 28 0 1 1066 431 347 46 46 chr3 63075764 63075896 -96523887 - L1MEg LINE L1 -5508 734 600 1 1066 282 146 55 0 chr3 63075933 63075988 -96523795 - RMER1A Other Other -5 1025 968 1 1066 1474 312 41 12 chr3 63075984 63076888 -96522895 - RMER1B Other Other -531 535 12 1 1066 638 262 97 15 chr3 63077220 63077543 -96522240 + MTD LTR MaLR 14 407 -12 1 1066 726 353 56 12 chr3 63078798 63079122 -96520661 - MLT1A0 LTR MaLR 0 365 28 1 1066 3347 85 33 0 chr3 63079160 63079619 -96520164 + Lx3_Mus LINE L1 6527 7000 -9 1 1066 198 0 0 0 chr3 63079620 63079642 -96520141 + (TTAAA)n Simple_repeat Simple_repeat 3 24 0 1 1066 192 77 0 0 chr3 63079647 63079673 -96520110 + (A)n Simple_repeat Simple_repeat 1 26 0 1 1066 180 0 0 0 chr3 63079763 63079783 -96520000 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 1 1066 603 250 7 21 chr3 63079787 63079930 -96519853 - B1_Mm SINE Alu -6 141 1 1 1066 396 314 122 54 chr3 63079935 63080140 -96519643 - MER20 DNA MER1_type 0 219 1 1 1066 189 0 0 0 chr3 63080322 63080343 -96519440 + (TG)n Simple_repeat Simple_repeat 1 21 0 1 1066 279 0 0 0 chr3 63080345 63080376 -96519407 + (CA)n Simple_repeat Simple_repeat 1 31 0 1 1066 488 318 108 36 chr3 63081136 63081443 -96518340 - MLT1C LTR MaLR -130 337 9 1 1066 713 227 0 0 chr3 63081965 63082097 -96517686 + B1_Mur1 SINE Alu 1 132 -17 1 1066 617 307 181 7 chr3 63082276 63082987 -96516796 + L1ME1 LINE L1 5334 6168 -11 1 1066 583 284 34 45 chr3 63083255 63083432 -96516351 - B4A SINE B4 0 292 118 1 1066 653 164 78 0 chr3 63083433 63083561 -96516222 + MTD LTR MaLR 1 138 -281 1 1066 1658 239 27 18 chr3 63083586 63083987 -96515796 - MTD LTR MaLR -14 405 1 1 1066 324 301 0 0 chr3 63084014 63084097 -96515686 - B4A SINE B4 -208 84 2 1 1066 24 53 0 0 chr3 63085555 63085593 -96514190 + AT_rich Low_complexity Low_complexity 1 38 0 1 1066 637 242 87 6 chr3 63085594 63085777 -96514006 + MER2 DNA MER2_type 144 341 -4 1 1066 237 33 0 0 chr3 63086148 63086178 -96513605 + (GGGTG)n Simple_repeat Simple_repeat 2 31 0 1 1066 1101 66 0 0 chr3 63086179 63086315 -96513468 - B1_Mus1 SINE Alu -12 136 1 1 1066 207 0 0 0 chr3 63086315 63086338 -96513445 + (T)n Simple_repeat Simple_repeat 1 23 0 1 1066 576 0 0 0 chr3 63087318 63087382 -96512401 + (TAGA)n Simple_repeat Simple_repeat 4 67 0 1 1066 805 271 20 0 chr3 63087433 63087632 -96512151 - ID_B1 SINE B4 -3 221 19 1 1066 678 299 35 15 chr3 63087880 63088080 -96511703 + ID_B1 SINE B4 14 217 -7 1 1066 23 54 0 0 chr3 63088215 63088252 -96511531 + AT_rich Low_complexity Low_complexity 1 37 0 1 1066 231 286 46 51 chr3 63088288 63088483 -96511300 - L1M5 LINE L1 -349 5891 5698 1 1066 1664 55 5 5 chr3 63088559 63088778 -96511005 - L1_Mus1 LINE L1 0 6567 6349 1 1066 269 243 81 0 chr3 63088884 63088958 -96510825 - ID4_ SINE ID -2 81 2 1 1066 919 223 16 37 chr3 63089007 63089198 -96510585 + B3 SINE B2 6 192 -24 1 1066 291 93 0 0 chr3 63089200 63089243 -96510540 + (TC)n Simple_repeat Simple_repeat 2 44 0 1 1066 244 0 56 0 chr3 63089243 63089279 -96510504 + (CA)n Simple_repeat Simple_repeat 1 38 0 1 1066 554 252 70 28 chr3 63089868 63090011 -96509772 + RSINE1 SINE B4 8 156 -9 1 1066 688 282 0 0 chr3 63090675 63090824 -96508959 - RSINE1 SINE B4 -14 151 3 1 1066 535 282 85 18 chr3 63091301 63091700 -96508083 - L1MA9 LINE L1 -338 5962 5516 1 1066 702 180 16 0 chr3 63091713 63091835 -96507948 - B1F2 SINE Alu 0 149 26 1 1066 1098 271 97 71 chr3 63091835 63092627 -96507156 - L1MA9 LINE L1 -802 5489 4660 1 1066 216 0 0 0 chr3 63092627 63092651 -96507132 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1 1066 1098 279 117 91 chr3 63092651 63093110 -96506673 - L1MA9 LINE L1 -1484 4659 4192 1 1066 1231 41 0 0 chr3 63093110 63093257 -96506526 - B1_Mus2 SINE Alu 0 147 1 1 1066 1098 279 117 91 chr3 63093257 63093451 -96506332 - L1MA9 LINE L1 -1952 4191 4004 1 1066 261 57 0 0 chr3 63093451 63093486 -96506297 + (TG)n Simple_repeat Simple_repeat 2 36 0 1 1066 1098 279 117 91 chr3 63093486 63093761 -96506022 - L1MA9 LINE L1 -2140 4003 3721 1 1066 639 244 26 24 chr3 63094216 63094464 -96505319 - L1MA9 LINE L1 -2574 3569 3274 1 1066 238 316 51 0 chr3 63094534 63094613 -96505170 - ID4 SINE ID 0 83 1 1 1066 1572 185 68 0 chr3 63094766 63095074 -96504709 + MTC LTR MaLR 36 364 -57 1 1066 234 281 46 58 chr3 63095335 63095509 -96504274 - L1MEe LINE L1 -3486 2660 2489 1 1066 548 212 96 22 chr3 63095754 63095889 -96503894 - B1_Mur2 SINE Alu 0 149 5 1 1066 469 303 103 33 chr3 63095959 63096259 -96503524 - L1MEe LINE L1 -3990 2176 1856 1 1066 814 79 167 0 chr3 63097318 63097444 -96502339 + B1_Mm SINE Alu 1 147 0 1 1066 201 74 0 0 chr3 63097444 63097471 -96502312 + (A)n Simple_repeat Simple_repeat 1 27 0 1 1066 189 0 0 0 chr3 63098658 63098679 -96501104 + (TTTG)n Simple_repeat Simple_repeat 4 24 0 1 1066 229 331 29 7 chr3 63099034 63099171 -96500612 + GA-rich Low_complexity Low_complexity 6 145 0 1 1066 185 0 40 0 chr3 63100743 63100768 -96499015 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1 1066 180 0 0 0 chr3 63100868 63100888 -96498895 + (TGGGGG)n Simple_repeat Simple_repeat 6 25 0 1 1066 227 360 101 13 chr3 63102967 63103116 -96496667 + MIRb SINE MIR 85 246 -22 1 1066 312 137 0 0 chr3 63103904 63103955 -96495828 + (TA)n Simple_repeat Simple_repeat 1 51 0 1 1066 552 30 0 0 chr3 63105257 63105323 -96494460 + (GA)n Simple_repeat Simple_repeat 1 66 0 1 1066 459 0 0 0 chr3 63105474 63105525 -96494258 + (CA)n Simple_repeat Simple_repeat 2 52 0 1 1066 441 84 0 0 chr3 63107292 63107363 -96492420 + (CA)n Simple_repeat Simple_repeat 2 72 0 1 1066 451 354 46 46 chr3 63108092 63108311 -96491472 - MER20 DNA MER1_type 0 219 1 1 1066 252 302 153 114 chr3 63108403 63108534 -96491249 + MLT1D LTR MaLR 62 197 -308 1 1066 337 254 0 0 chr3 63108746 63108813 -96490970 - MIR SINE MIR -195 67 1 1 1066 334 252 36 64 chr3 63109019 63109159 -96490624 - MLT1A1 LTR MaLR 0 408 273 1 1066 1313 221 128 11 chr3 63111607 63111959 -96487824 + MTD LTR MaLR 25 417 -2 1 1066 270 325 7 22 chr3 63112145 63112265 -96487518 + MIRm SINE MIR 36 156 -120 1 1066 294 270 119 10 chr3 63112861 63112962 -96486821 + MER5A1 DNA MER1_type 14 125 -41 1 1066 584 300 61 35 chr3 63115607 63115952 -96483831 - L1MA5 LINE L1 -460 5840 5487 1 1066 1512 175 4 19 chr3 63115961 63116229 -96483554 - Lx4B LINE L1 -433 6625 6362 1 1066 1711 219 39 29 chr3 63116230 63116640 -96483143 + Lx4B LINE L1 6638 7051 -7 1 1066 976 295 159 29 chr3 63116657 63117489 -96482294 - L1MA5 LINE L1 -442 5444 4507 1 1066 312 27 0 0 chr3 63122272 63122309 -96477474 + (TG)n Simple_repeat Simple_repeat 1 37 0 1 1066 648 268 85 60 chr3 63122788 63123153 -96476630 + MTEa LTR MaLR 5 378 -1 1 1066 497 327 36 54 chr3 63123192 63123503 -96476280 + Tigger5 DNA MER2_type 16 265 -2141 1 1066 710 304 16 0 chr3 63123672 63123863 -96475920 - ID_B1 SINE B4 -16 208 15 1 1066 210 91 0 0 chr3 63124635 63124668 -96475115 + (TTTTTA)n Simple_repeat Simple_repeat 2 34 0 1 1066 423 333 41 23 chr3 63124922 63125094 -96474689 - MER82 DNA MER2_type -6 647 473 1 1066 311 204 0 22 chr3 63126190 63126280 -96473503 + CT-rich Low_complexity Low_complexity 1 88 0 1 1066 228 67 0 0 chr3 63127443 63127473 -96472310 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 1 1066 183 129 0 0 chr3 63129552 63129583 -96470200 + (TTAA)n Simple_repeat Simple_repeat 3 33 0 1 1066 212 180 20 20 chr3 63129997 63130048 -96469735 + RSINE1 SINE B4 11 61 -104 1 1066 225 0 0 0 chr3 63130048 63130073 -96469710 + (CA)n Simple_repeat Simple_repeat 2 26 0 1 1066 318 87 0 0 chr3 63131458 63131504 -96468279 + (CA)n Simple_repeat Simple_repeat 2 47 0 1 1066 22 56 0 0 chr3 63132006 63132042 -96467741 + AT_rich Low_complexity Low_complexity 1 36 0 1 1066 561 68 0 0 chr3 63132695 63132769 -96467014 + (TG)n Simple_repeat Simple_repeat 2 75 0 1 1066 772 270 130 107 chr3 63135572 63135739 -96464044 - L1M3 LINE L1 -1736 4404 4237 1 1066 5570 37 3 0 chr3 63135739 63136409 -96463374 - L1Md_T LINE L1 0 6582 5911 1 1066 772 270 130 107 chr3 63136409 63137103 -96462680 - L1M3 LINE L1 -1904 4236 3523 1 1066 26 50 0 0 chr3 63138073 63138113 -96461670 + AT_rich Low_complexity Low_complexity 1 40 0 1 1066 1159 48 7 0 chr3 63140594 63140739 -96459044 + B1_Mm SINE Alu 2 147 0 1 1066 741 171 44 66 chr3 63141117 63141299 -96458484 - B2_Mm2 SINE B2 -4 191 14 1 1066 423 38 0 0 chr3 63141299 63141352 -96458431 + (TC)n Simple_repeat Simple_repeat 2 54 0 1 1066 2772 80 5 8 chr3 63141361 63141737 -96458046 - L1_Mus3 LINE L1 -30 6608 6234 1 1066 1728 10 0 0 chr3 63142146 63142338 -96457445 + B2_Mm1a SINE B2 1 192 -1 1 1066 1203 199 98 34 chr3 63143240 63143536 -96456247 + RLTR46 LTR ERVK 1 315 -5 2 1066 22 0 0 0 chr3 63143684 63143706 -96456077 + AT_rich Low_complexity Low_complexity 1 22 0 2 1066 23 0 0 0 chr3 63146000 63146023 -96453760 + AT_rich Low_complexity Low_complexity 1 23 0 2 1066 21 0 0 0 chr3 63146996 63147017 -96452766 + AT_rich Low_complexity Low_complexity 1 21 0 2 1066 32 43 0 0 chr3 63147071 63147117 -96452666 + AT_rich Low_complexity Low_complexity 1 46 0 2 1066 451 261 52 9 chr3 63148417 63148533 -96451250 + ID_B1 SINE B4 99 219 -5 2 1066 598 244 68 169 chr3 63150171 63150408 -96449375 + B4 SINE B4 16 228 -64 2 1066 27 0 0 0 chr3 63150439 63150466 -96449317 + AT_rich Low_complexity Low_complexity 1 27 0 2 1066 843 163 179 0 chr3 63151371 63151561 -96448222 + URR1B DNA MER1_type 1 224 -1 2 1066 235 246 26 40 chr3 63153229 63153305 -96446478 - Charlie9 DNA MER1_type -1374 1383 1309 2 1066 549 0 0 0 chr3 63153372 63153433 -96446350 + (TA)n Simple_repeat Simple_repeat 1 61 0 2 1066 682 164 0 21 chr3 63153582 63153725 -96446058 + A-rich Low_complexity Low_complexity 3 142 0 2 1066 217 0 61 0 chr3 63155033 63155066 -96444717 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 2 1066 489 287 9 0 chr3 63155068 63155183 -96444600 - B1F2 SINE Alu -6 143 28 2 1066 405 289 60 60 chr3 63155162 63155346 -96444437 - RLTR26 LTR ERVK -458 184 1 2 1066 254 0 83 0 chr3 63157731 63157767 -96442016 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 2 1066 1061 65 0 41 chr3 63157767 63157912 -96441871 - B1_Mus1 SINE Alu -8 140 2 2 1066 897 52 0 0 chr3 63158120 63158235 -96441548 + B2_Mm2 SINE B2 2 116 -79 2 1066 297 155 0 0 chr3 63158486 63158544 -96441239 + T-rich Low_complexity Low_complexity 1 58 0 2 1066 897 117 0 0 chr3 63158571 63158708 -96441075 + (TC)n Simple_repeat Simple_repeat 2 138 0 2 1066 7405 89 14 4 chr3 63158708 63159944 -96439839 - L1_Mus3 LINE L1 -9 6629 5384 2 1066 636 259 86 0 chr3 63162166 63162328 -96437455 - B3A SINE B2 -16 182 7 2 1066 24 32 0 0 chr3 63165041 63165072 -96434711 + AT_rich Low_complexity Low_complexity 1 31 0 2 1066 7714 64 2 4 chr3 63166139 63167272 -96432511 - L1Md_F2 LINE L1 -12 6570 5440 2 1066 207 0 0 0 chr3 63167512 63167535 -96432248 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2 1066 234 0 0 0 chr3 63168552 63168578 -96431205 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 2 1066 204 40 0 0 chr3 63169149 63169174 -96430609 + (TA)n Simple_repeat Simple_repeat 1 25 0 2 1066 567 29 0 0 chr3 63169652 63169721 -96430062 + (TG)n Simple_repeat Simple_repeat 1 69 0 2 1066 389 321 15 30 chr3 63169825 63169960 -96429823 - Lx9 LINE L1 -382 7262 7130 2 1066 311 60 60 0 chr3 63170488 63170555 -96429228 + (TTTG)n Simple_repeat Simple_repeat 2 72 0 2 1066 508 317 5 11 chr3 63170560 63170745 -96429038 - L1MEc LINE L1 -5578 822 639 2 1066 323 358 153 10 chr3 63170833 63171121 -96428662 - L1MEc LINE L1 -5962 438 110 2 1066 508 275 87 0 chr3 63171500 63171649 -96428134 + RSINE1 SINE B4 4 165 0 2 1066 36 23 0 0 chr3 63171666 63171709 -96428074 + AT_rich Low_complexity Low_complexity 1 43 0 2 1066 370 301 15 0 chr3 63172989 63173173 -96426610 + (TG)n Simple_repeat Simple_repeat 1 186 0 2 1066 237 33 0 0 chr3 63174130 63174160 -96425623 + (ATTG)n Simple_repeat Simple_repeat 2 31 0 2 1066 219 88 0 0 chr3 63174189 63174223 -96425560 + (TTG)n Simple_repeat Simple_repeat 2 35 0 2 1066 687 25 0 0 chr3 63174477 63174558 -96425225 + (GTTTG)n Simple_repeat Simple_repeat 2 82 0 2 1066 978 109 0 7 chr3 63174558 63174696 -96425087 - B1_Mus1 SINE Alu -9 139 3 2 133 33589 104 15 16 chr3 63174711 63181286 -96418497 - L1Md_F2 LINE L1 -12 6570 1 2 1067 1740 188 72 158 chr3 63181868 63182154 -96417629 - MTC LTR MaLR 0 421 109 2 1067 1113 84 0 0 chr3 63182154 63182296 -96417487 + B1_Mus1 SINE Alu 1 142 -6 2 1067 570 67 0 0 chr3 63182302 63182377 -96417406 + (GA)n Simple_repeat Simple_repeat 2 76 0 2 1067 1740 188 72 158 chr3 63182377 63182544 -96417239 - MTC LTR MaLR -313 108 1 2 1067 255 318 99 0 chr3 63185848 63185999 -96413784 - L1M5 LINE L1 -335 5905 5740 2 1067 1407 65 5 0 chr3 63188039 63188224 -96411559 + L1Md_T LINE L1 6397 6582 0 2 1067 2757 77 42 58 chr3 63190563 63190992 -96408791 - BGLII_Mus LTR ERVK 0 422 1 2 1067 5699 177 62 58 chr3 63190992 63192444 -96407339 - RMER3D-int LTR ERVK 0 2842 1385 2 1067 1994 92 193 79 chr3 63192447 63192594 -96407189 + BGLII_Mus LTR ERVK 1 195 -227 2 1067 474 18 0 0 chr3 63192594 63192649 -96407134 + (GA)n Simple_repeat Simple_repeat 1 55 0 2 1067 1994 92 193 79 chr3 63192649 63192880 -96406903 + BGLII_Mus LTR ERVK 196 421 -1 2 1067 497 277 207 78 chr3 63194093 63194373 -96405410 + MLT1D LTR MaLR 17 325 -180 2 1067 306 0 0 0 chr3 63194373 63194407 -96405376 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 2 1067 497 277 207 78 chr3 63194407 63194552 -96405231 + MLT1D LTR MaLR 326 496 -9 2 1067 201 74 0 0 chr3 63195103 63195130 -96404653 + (TTTG)n Simple_repeat Simple_repeat 3 29 0 2 1067 21 0 0 0 chr3 63195273 63195294 -96404489 + AT_rich Low_complexity Low_complexity 1 21 0 2 1067 1143 253 91 40 chr3 63195678 63196028 -96403755 + MTEa LTR MaLR 8 375 -4 2 1067 350 314 152 34 chr3 63196267 63196531 -96403252 + MLT1A0 LTR MaLR 63 357 -8 2 1067 4465 56 19 2 chr3 63196909 63197485 -96402298 - Lx3_Mus LINE L1 0 7009 6424 2 1067 23 54 0 0 chr3 63197843 63197880 -96401903 + AT_rich Low_complexity Low_complexity 1 37 0 2 1067 265 309 53 141 chr3 63198218 63198538 -96401245 - MTC-int LTR MaLR -266 992 701 2 1067 2436 215 88 24 chr3 63199074 63199702 -96400081 + Lx7 LINE L1 6818 7485 -211 2 1067 521 278 62 31 chr3 63200038 63200231 -96399552 + Lx8 LINE L1 7233 7431 -42 2 1067 1294 289 18 47 chr3 63200397 63200782 -96399001 + MTE2b LTR MaLR 2 375 -4 2 1067 194 174 22 0 chr3 63201149 63201195 -96398588 + (CATA)n Simple_repeat Simple_repeat 1 47 0 2 1067 324 320 46 15 chr3 63201279 63201409 -96398374 - ORSL-2a DNA Tip100 -1 341 208 2 1067 185 317 17 0 chr3 63203037 63203097 -96396686 - L3 LINE CR1 -1651 2838 2778 2 1067 258 184 36 27 chr3 63204034 63204084 -96395699 + polypyrimidine Low_complexity Low_complexity 62 115 0 2 1067 996 146 0 0 chr3 63204084 63204262 -96395521 + (TCC)n Simple_repeat Simple_repeat 3 180 0 2 1067 885 180 10 7 chr3 63204262 63204485 -96395298 + CT-rich Low_complexity Low_complexity 1 223 0 2 1067 1224 101 0 0 chr3 63204485 63204663 -96395120 + (TTCTCC)n Simple_repeat Simple_repeat 3 180 0 2 1067 885 178 0 0 chr3 63204663 63204674 -96395109 + polypyrimidine Low_complexity Low_complexity 2 12 0 2 1067 203 369 114 8 chr3 63204885 63205008 -96394775 - MIRb SINE MIR -111 157 19 2 1067 721 346 22 45 chr3 63205020 63205289 -96394494 + B4A SINE B4 2 264 -28 2 1067 303 104 0 0 chr3 63205334 63205382 -96394401 + (CA)n Simple_repeat Simple_repeat 2 49 0 2 1067 545 267 60 12 chr3 63205579 63205746 -96394037 + MLT1C LTR MaLR 10 184 -206 2 1067 282 338 62 56 chr3 63205879 63205979 -96393804 - B1F1 SINE Alu -3 146 45 2 1067 1344 219 63 189 chr3 63205979 63206677 -96393106 + RMER19C LTR ERVK 2 611 0 2 1067 282 338 62 56 chr3 63206677 63206720 -96393063 - B1F1 SINE Alu -105 44 2 2 1067 679 266 159 9 chr3 63206756 63206976 -96392807 + MLT1C LTR MaLR 210 462 -5 2 1067 225 119 0 0 chr3 63207604 63207646 -96392137 + (CAAA)n Simple_repeat Simple_repeat 2 43 0 2 1067 446 342 38 0 chr3 63207647 63207805 -96391978 + B4A SINE B4 42 205 -87 2 1067 293 320 82 10 chr3 63208166 63208264 -96391519 - L2b LINE L2 -1 3374 3270 2 1067 208 303 0 0 chr3 63208907 63208973 -96390810 + (TATG)n Simple_repeat Simple_repeat 1 66 0 2 1067 560 377 34 38 chr3 63209015 63209252 -96390531 - B4 SINE B4 0 292 57 2 1067 334 344 136 31 chr3 63209478 63209706 -96390077 - LTR85a LTR Gypsy? -450 252 1 2 1067 286 291 23 81 chr3 63210071 63210157 -96389626 + B1F SINE Alu 6 86 -63 2 1067 396 0 0 0 chr3 63210159 63210203 -96389580 + (TA)n Simple_repeat Simple_repeat 2 45 0 2 1067 301 390 85 5 chr3 63210860 63211061 -96388722 - MER110 LTR ERV1 -87 404 188 2 1067 1058 83 7 7 chr3 63211078 63211224 -96388559 + B1_Mm SINE Alu 2 147 0 2 1067 240 178 0 0 chr3 63211225 63211298 -96388485 + A-rich Low_complexity Low_complexity 1 73 0 2 1067 1774 88 4 54 chr3 63212180 63212456 -96387327 - L1_Mus2 LINE L1 0 6566 6305 2 1067 312 27 0 0 chr3 63213717 63213754 -96386029 + (TC)n Simple_repeat Simple_repeat 2 38 0 2 1067 755 108 0 8 chr3 63213745 63213866 -96385917 + (TTC)n Simple_repeat Simple_repeat 3 122 0 2 1067 810 182 52 147 chr3 63213867 63214099 -96385684 + ORR1C2 LTR MaLR 175 384 0 2 1067 2440 251 86 8 chr3 63214099 63214844 -96384939 - RCHARR1 DNA MER1_type -167 807 5 2 1067 199 292 15 0 chr3 63215018 63215083 -96384700 + MER5B DNA MER1_type 29 94 -84 2 1067 240 339 56 24 chr3 63215256 63215580 -96384203 - HAL1 LINE L1 -941 1566 1061 2 1067 700 293 151 9 chr3 63215679 63215996 -96383787 + MLT1B LTR MaLR 29 390 0 2 1067 415 256 69 52 chr3 63215997 63216170 -96383613 - HAL1 LINE L1 -1358 1149 974 2 1067 291 234 13 25 chr3 63216260 63216339 -96383444 - HAL1 LINE L1 -1666 841 764 2 1067 250 292 0 40 chr3 63217736 63217811 -96381972 + MIRb SINE MIR 134 205 -63 2 1067 592 290 6 6 chr3 63218118 63218281 -96381502 + RSINE1 SINE B4 2 164 -1 2 1067 474 279 72 14 chr3 63218700 63218838 -96380945 + RSINE1 SINE B4 4 149 -16 2 1067 561 15 0 0 chr3 63218838 63218904 -96380879 + (CA)n Simple_repeat Simple_repeat 1 66 0 2 1067 726 50 0 0 chr3 63218926 63219025 -96380758 + (TCTA)n Simple_repeat Simple_repeat 2 100 0 2 1067 920 213 32 82 chr3 63219040 63219260 -96380523 + B3 SINE B2 7 215 -1 2 1067 22 0 0 0 chr3 63219384 63219406 -96380377 + AT_rich Low_complexity Low_complexity 1 22 0 2 1067 1127 81 0 0 chr3 63219598 63219746 -96380037 - B1_Mus1 SINE Alu 0 148 1 2 1067 400 289 53 19 chr3 63219930 63220138 -96379645 + L1_Mur3 LINE L1 5040 5254 -626 3 1067 704 86 9 0 chr3 63220291 63220396 -96379387 + (TAGA)n Simple_repeat Simple_repeat 4 109 0 3 1067 920 200 62 30 chr3 63220519 63220753 -96379030 + BGLII_B LTR ERVK 8 244 -178 3 1067 2976 69 20 0 chr3 63220753 63221143 -96378640 + MTB LTR MaLR 3 400 0 3 1067 426 335 53 39 chr3 63221143 63221191 -96378592 + BGLII_B LTR ERVK 245 294 -128 3 1067 32 43 0 0 chr3 63221602 63221648 -96378135 + AT_rich Low_complexity Low_complexity 1 46 0 3 1067 9001 110 19 22 chr3 63221662 63223665 -96376118 + L1VL4 LINE L1 254 2243 -1316 3 1067 31 58 0 0 chr3 63224314 63224366 -96375417 + AT_rich Low_complexity Low_complexity 1 52 0 3 1067 297 182 39 0 chr3 63224385 63224462 -96375321 + Lx9 LINE L1 7509 7588 -56 3 1067 274 354 0 0 chr3 63224987 63225086 -96374697 - L1MC LINE L1 -2251 5631 5533 3 1067 1116 255 25 34 chr3 63225613 63225938 -96373845 + RodERV21-int LTR ERV1 1 322 -4669 3 1067 754 292 15 49 chr3 63226195 63226461 -96373322 + RodERV21-int LTR ERV1 688 944 -4047 3 1067 249 109 0 0 chr3 63227493 63227539 -96372244 + (GA)n Simple_repeat Simple_repeat 1 46 0 3 1067 1203 147 35 4 chr3 63228134 63228366 -96371417 + Lx2A LINE L1 5203 5441 -436 3 1067 3391 66 19 2 chr3 63228362 63228848 -96370935 + MusHAL1 LINE L1 2217 2710 -2 3 1067 423 0 0 0 chr3 63228996 63229043 -96370740 + (CA)n Simple_repeat Simple_repeat 2 48 0 3 1067 8819 122 6 6 chr3 63229043 63230557 -96369226 + Lx2A LINE L1 5459 6968 -40 3 1067 437 119 0 45 chr3 63230557 63230645 -96369138 + Lx2A LINE L1 6924 7007 -1 3 1067 825 189 53 16 chr3 63230768 63231015 -96368768 + MYSERV6-int LTR ERVK 1870 2125 -3397 3 1067 1214 266 50 54 chr3 63231015 63231724 -96368059 + MYSERV6-int LTR ERVK 8093 8683 -276 3 1067 577 238 76 122 chr3 63232071 63232440 -96367343 + RLTR19-int LTR ERVK 3437 3788 -2349 3 1067 506 226 68 76 chr3 63232505 63232754 -96367029 + RMER17C-int LTR ERVK 2618 2864 -374 3 1067 348 24 0 0 chr3 63232756 63232797 -96366986 + (TG)n Simple_repeat Simple_repeat 2 42 0 3 1067 305 317 66 8 chr3 63232919 63233040 -96366743 + RLTR19-int LTR ERVK 4963 5090 -1460 3 1067 350 231 11 6 chr3 63233218 63233401 -96366382 + CT-rich Low_complexity Low_complexity 1 184 0 3 1067 455 270 37 58 chr3 63233476 63233665 -96366118 - RLTR23 LTR ERV1 0 430 246 3 1067 1317 235 22 79 chr3 63233992 63234348 -96365435 - ORR1E LTR MaLR -23 336 1 3 1067 419 214 82 0 chr3 63235075 63235174 -96364609 - PB1D10 SINE Alu -5 112 8 3 1067 180 322 85 43 chr3 63235209 63235303 -96364480 - MIRb SINE MIR -93 175 78 3 1067 238 339 133 17 chr3 63235560 63235680 -96364103 + L2b LINE L2 3240 3373 -2 3 1067 783 233 118 10 chr3 63235818 63236013 -96363770 + B3 SINE B2 1 216 0 3 1067 225 170 21 0 chr3 63236013 63236060 -96363723 + B1_Mm SINE Alu 100 147 0 3 1067 278 354 0 10 chr3 63236092 63236195 -96363588 + ID4_ SINE ID 1 103 -49 3 1067 1673 197 54 24 chr3 63236719 63237088 -96362695 - ORR1C2 LTR MaLR -2 382 3 3 1067 244 290 167 43 chr3 63237158 63237320 -96362463 - MLT1G3 LTR MaLR 0 610 429 3 1067 237 262 0 0 chr3 63237333 63237394 -96362389 + (TG)n Simple_repeat Simple_repeat 1 61 0 3 1067 854 168 0 11 chr3 63237394 63237575 -96362208 + (TA)n Simple_repeat Simple_repeat 2 180 0 3 1067 315 0 0 0 chr3 63237574 63237609 -96362174 + (TG)n Simple_repeat Simple_repeat 2 36 0 3 1067 336 215 0 0 chr3 63237621 63237686 -96362097 - HAL1-3A_ME LINE L1 -835 2023 1959 3 1067 305 315 178 12 chr3 63238270 63238460 -96361323 - MLT1G3 LTR MaLR -328 267 3 3 1067 807 309 19 0 chr3 63238677 63238887 -96360896 - B3 SINE B2 -2 214 1 3 1067 719 253 25 0 chr3 63238911 63239073 -96360710 - B3 SINE B2 -6 210 45 3 1067 899 146 6 0 chr3 63239149 63239307 -96360476 + GA-rich Low_complexity Low_complexity 2 160 0 3 1067 1156 268 98 6 chr3 63240190 63240546 -96359237 + MLT1D LTR MaLR 77 465 -40 3 1067 22 35 0 0 chr3 63240753 63240782 -96359001 + AT_rich Low_complexity Low_complexity 1 29 0 3 1067 26 0 0 0 chr3 63241124 63241150 -96358633 + AT_rich Low_complexity Low_complexity 1 26 0 3 1067 459 266 144 37 chr3 63241162 63241377 -96358406 + Lx8 LINE L1 7227 7464 -9 3 1067 259 344 137 65 chr3 63241894 63242230 -96357553 + MLT1G3 LTR MaLR 199 558 -37 3 1067 21 0 0 0 chr3 63242765 63242786 -96356997 + AT_rich Low_complexity Low_complexity 1 21 0 3 1067 292 372 7 44 chr3 63243108 63243243 -96356540 + MER102c DNA MER1_type 87 216 -115 3 1067 532 293 16 0 chr3 63244011 63244134 -96355649 - ID_B1 SINE B4 -9 215 91 3 1067 1410 64 26 21 chr3 63245374 63245566 -96354217 + B2_Mm2 SINE B2 2 194 -1 3 1067 449 92 0 13 chr3 63245566 63245643 -96354140 + (GAAA)n Simple_repeat Simple_repeat 1 76 0 3 1067 473 0 18 0 chr3 63245667 63245724 -96354059 + (TG)n Simple_repeat Simple_repeat 2 59 0 3 1067 1940 154 6 0 chr3 63245808 63246132 -96353651 - ORR1A3 LTR MaLR 0 326 1 3 1067 36 40 0 0 chr3 63246971 63247021 -96352762 + AT_rich Low_complexity Low_complexity 1 50 0 3 1067 257 214 70 20 chr3 63247026 63247126 -96352657 - Lx6 LINE L1 -40 7420 7316 3 1067 2200 168 8 29 chr3 63247734 63247990 -96351793 + ORR1B2 LTR MaLR 1 253 -114 3 1067 2206 102 3 58 chr3 63247990 63248334 -96351449 - ORR1A2 LTR MaLR -2 325 1 3 1067 2200 168 8 29 chr3 63248334 63248452 -96351331 + ORR1B2 LTR MaLR 254 367 0 3 1067 195 389 31 16 chr3 63248782 63248910 -96350873 - MIR3 SINE MIR -18 190 61 3 1067 285 29 0 0 chr3 63248988 63249022 -96350761 + (CA)n Simple_repeat Simple_repeat 2 35 0 3 1067 919 341 38 114 chr3 63249064 63249660 -96350123 + MLT2B3 LTR ERVL 6 552 -2 3 1067 992 105 28 0 chr3 63249714 63249857 -96349926 + B1_Mus1 SINE Alu 1 147 -1 3 1067 1918 113 40 61 chr3 63249890 63250191 -96349592 - ORR1A4 LTR MaLR 0 329 36 3 1067 268 158 66 66 chr3 63250191 63250252 -96349531 - ORR1A4-int LTR MaLR -2 1961 1904 3 1067 986 305 82 58 chr3 63250262 63251015 -96348768 + ERVL-int LTR ERVL 87 857 -4857 3 1067 360 143 45 19 chr3 63251022 63251115 -96348668 - MTE2a LTR MaLR -277 102 1 3 1067 323 303 73 0 chr3 63251295 63251404 -96348379 + B4A SINE B4 5 121 -171 3 1067 32433 87 19 8 chr3 63251543 63257283 -96342500 + L1Md_F2 LINE L1 217 6022 -560 3 1067 923 74 15 0 chr3 63257283 63257418 -96342365 + L1Md_F2 LINE L1 6446 6582 0 3 1067 684 327 70 8 chr3 63257459 63257860 -96341923 + ERVL-int LTR ERVL 930 1355 -4359 3 1067 856 250 35 38 chr3 63257863 63258150 -96341633 + RLTR15 LTR ERVK 1 286 -73 3 1067 992 314 121 16 chr3 63258230 63258842 -96340941 + ERVL-int LTR ERVL 1416 2091 -3666 3 1067 979 109 37 43 chr3 63258847 63259010 -96340773 + RMER6C LTR ERVK 7 168 -522 3 1067 357 272 112 0 chr3 63259106 63259144 -96340639 - L1M2 LINE L1 -1926 4217 4180 3 1067 4570 34 0 2 chr3 63259144 63259682 -96340101 - L1Md_T LINE L1 0 6582 6046 3 1067 357 272 112 0 chr3 63259682 63259768 -96340015 - L1M2 LINE L1 -1964 4179 4080 3 1067 894 331 68 39 chr3 63259967 63260427 -96339356 + MLT2B2 LTR ERVL 1 486 -68 3 1067 503 16 16 0 chr3 63260487 63260551 -96339232 + (TAGA)n Simple_repeat Simple_repeat 2 66 0 3 1067 424 292 44 48 chr3 63260666 63260939 -96338844 + ALINE LINE RTE 172 443 -174 3 1067 263 385 74 15 chr3 63261618 63261821 -96337962 + L2a LINE L2 2208 2422 -997 3 1067 797 248 70 47 chr3 63261880 63262138 -96337645 + RMER13A LTR ERVK 115 378 -482 3 1067 865 95 22 0 chr3 63262299 63262436 -96337347 + (TTTC)n Simple_repeat Simple_repeat 2 141 0 3 1067 303 293 58 56 chr3 63262451 63262618 -96337165 + L1MC4 LINE L1 6650 6842 -1200 3 1067 218 368 77 49 chr3 63262719 63262902 -96336881 + L2a LINE L2 2935 3122 -304 3 1067 207 186 0 0 chr3 63263017 63263060 -96336723 + GA-rich Low_complexity Low_complexity 1 43 0 3 1067 470 224 141 4 chr3 63263726 63263912 -96335871 + Lx7 LINE L1 489 679 -7049 3 1067 6047 194 58 19 chr3 63263915 63265038 -96334745 + Lx7 LINE L1 5031 6189 -1507 3 1067 480 62 0 0 chr3 63265038 63265102 -96334681 + (TG)n Simple_repeat Simple_repeat 1 64 0 3 1067 6047 239 49 28 chr3 63265102 63266150 -96333633 + Lx7 LINE L1 6190 7255 -441 3 1067 441 0 0 0 chr3 63266161 63266210 -96333573 + (TG)n Simple_repeat Simple_repeat 2 50 0 3 1067 3943 172 32 46 chr3 63266213 63267018 -96332765 - Lx5 LINE L1 -14 7036 6243 3 1067 1447 212 43 62 chr3 63267017 63267332 -96332451 + Lx7 LINE L1 7238 7542 -154 3 1067 360 0 0 0 chr3 63267332 63267372 -96332411 + (TATTG)n Simple_repeat Simple_repeat 4 43 0 3 1067 1447 212 43 62 chr3 63267372 63267523 -96332260 + Lx7 LINE L1 7543 7694 -2 3 1067 450 0 0 0 chr3 63267773 63267823 -96331960 + (TCTA)n Simple_repeat Simple_repeat 4 53 0 3 1067 2746 171 34 55 chr3 63267865 63268348 -96331435 - Lx5 LINE L1 0 7050 6574 3 1067 3690 143 99 17 chr3 63268348 63269045 -96330738 + RMER6A LTR ERVK 3 756 0 3 1067 2746 171 34 55 chr3 63269045 63269156 -96330627 - Lx5 LINE L1 -477 6573 6469 3 1067 1583 184 7 0 chr3 63269155 63269438 -96330345 + Lx5 LINE L1 6194 6478 -572 3 1067 510 17 0 0 chr3 63269788 63269847 -96329936 + (TG)n Simple_repeat Simple_repeat 1 59 0 3 1067 508 341 60 56 chr3 63269900 63270133 -96329650 - B4A SINE B4 -18 274 41 3 1067 28 0 0 0 chr3 63270243 63270271 -96329512 + AT_rich Low_complexity Low_complexity 1 28 0 3 1067 22 0 0 0 chr3 63271229 63271251 -96328532 + AT_rich Low_complexity Low_complexity 1 22 0 3 1067 342 211 0 0 chr3 63272145 63272249 -96327534 + (CA)n Simple_repeat Simple_repeat 1 104 0 3 1067 2626 305 43 52 chr3 63273953 63275640 -96324143 - Lx8 LINE L1 -299 7174 5472 3 1067 27 87 0 0 chr3 63275715 63275784 -96323999 + AT_rich Low_complexity Low_complexity 1 69 0 3 1067 879 239 72 4 chr3 63275787 63276022 -96323761 + L1VL2 LINE L1 145 395 -5940 3 1067 4828 142 26 66 chr3 63276022 63277390 -96322393 + L1VL2 LINE L1 1 1168 -2447 3 1067 7170 132 3 24 chr3 63277388 63279352 -96320431 + Lx LINE L1 4740 6651 -3 3 1067 398 275 0 0 chr3 63279415 63279495 -96320288 + B3A SINE B2 1 80 -118 3 1067 3268 192 131 56 chr3 63279503 63280340 -96319443 + RMER13B LTR ERVK 5 904 -4 3 1067 282 318 0 80 chr3 63280336 63280473 -96319310 + B3A SINE B2 73 198 0 3 1067 541 241 37 15 chr3 63280488 63280623 -96319160 - B3 SINE B2 0 216 79 3 1067 503 255 190 0 chr3 63280663 63280847 -96318936 + ID_B1 SINE B4 1 219 -5 3 1067 221 341 37 59 chr3 63281423 63281610 -96318173 + MER5A DNA MER1_type 6 188 -1 3 1067 360 0 0 0 chr3 63281624 63281664 -96318119 + (TC)n Simple_repeat Simple_repeat 1 40 0 3 1067 1909 188 16 39 chr3 63281684 63282122 -96317661 - Lx LINE L1 -4 6650 6223 3 1067 1688 199 59 6 chr3 63282900 63283224 -96316559 + ORR1C1 LTR MaLR 1 341 -37 3 1067 2317 311 59 85 chr3 63283226 63284390 -96315393 + Lx5 LINE L1 5917 7050 0 4 1067 330 74 69 69 chr3 63284426 63284484 -96315299 + ORR1C2 LTR MaLR 327 384 0 4 1067 912 243 10 0 chr3 63284721 63284927 -96314856 - B3 SINE B2 -5 211 4 4 1067 279 290 26 86 chr3 63287061 63287178 -96312605 + MIRb SINE MIR 99 208 -60 4 1067 208 384 53 0 chr3 63287310 63287443 -96312340 - MIR3 SINE MIR -39 169 30 4 1067 9748 185 41 27 chr3 63288273 63289705 -96310078 + MERVL_2A-int LTR ERVL 3602 5058 -703 4 1067 3547 102 31 22 chr3 63289705 63290257 -96309526 - Lx LINE L1 -1 6653 6097 4 1067 9748 185 41 27 chr3 63290257 63290836 -96308947 + MERVL_2A-int LTR ERVL 5059 5642 -119 4 1067 252 268 0 14 chr3 63290849 63290921 -96308862 + ORR1A3-int LTR MaLR 569 639 -1324 4 1067 335 125 0 0 chr3 63290921 63290977 -96308806 + MERVL_2A-int LTR ERVL 5706 5761 0 4 1067 621 272 129 40 chr3 63290977 63291368 -96308415 + MT2A LTR ERVL 1 457 -144 4 1067 1141 205 8 45 chr3 63291309 63291554 -96308229 + MTC LTR MaLR 176 411 -10 4 1067 2224 78 0 89 chr3 63292020 63292370 -96307413 + L1_Mus1 LINE L1 6249 6567 0 4 1067 260 360 0 11 chr3 63292570 63292657 -96307126 + PB1D10 SINE Alu 27 112 -5 4 1067 248 274 0 0 chr3 63292670 63292721 -96307062 + ID4 SINE ID 5 55 -28 4 1067 207 0 0 0 chr3 63292870 63292893 -96306890 + (T)n Simple_repeat Simple_repeat 1 23 0 4 1067 334 304 11 0 chr3 63292915 63293007 -96306776 + U6 snRNA snRNA 2 94 -13 4 1067 335 376 45 31 chr3 63293037 63293394 -96306389 + L1MDa LINE L1 1575 1936 -4697 4 1067 513 211 50 58 chr3 63293394 63293515 -96306268 + B3A SINE B2 4 123 -75 4 1067 324 0 0 0 chr3 63293542 63293578 -96306205 + (CA)n Simple_repeat Simple_repeat 2 37 0 4 1067 260 265 16 89 chr3 63293943 63294067 -96305716 + L1_Rod LINE L1 2129 2243 -3604 4 1067 235 256 30 15 chr3 63294098 63294229 -96305554 + L1MA7 LINE L1 2350 2482 -3661 4 1067 952 292 33 68 chr3 63294244 63294850 -96304933 + L1MA7 LINE L1 5304 5888 -403 4 1067 279 0 0 0 chr3 63294881 63294912 -96304871 + (TG)n Simple_repeat Simple_repeat 2 32 0 4 1067 1188 91 56 17 chr3 63295045 63295223 -96304560 + B2_Mm2 SINE B2 1 185 -10 4 1067 3676 128 68 16 chr3 63295244 63295884 -96303899 + Lx3B LINE L1 6259 6940 -33 4 1067 3714 37 5 0 chr3 63295884 63296318 -96303465 + RLTR10C LTR ERVK 1 436 0 4 1067 3676 128 68 16 chr3 63296318 63296355 -96303428 + Lx3B LINE L1 6941 6971 -2 4 1067 30 45 0 0 chr3 63296355 63296399 -96303384 + AT_rich Low_complexity Low_complexity 1 44 0 4 1067 308 316 20 20 chr3 63297404 63297601 -96302182 + L1M4 LINE L1 43 239 -6303 4 1067 1413 298 48 36 chr3 63297847 63298351 -96301432 + RMER5 LTR ERV1 10 519 -15 4 1067 249 278 10 40 chr3 63298445 63298546 -96301237 + L1M4 LINE L1 523 620 -5922 4 1067 690 211 119 5 chr3 63298739 63298949 -96300834 + L1M4 LINE L1 821 1054 -5488 4 1067 23290 130 17 23 chr3 63298968 63301227 -96298556 - L1_Mus4 LINE L1 -2 6634 4343 4 1067 1483 58 16 0 chr3 63301227 63301417 -96298366 - B2_Mm1t SINE B2 0 193 1 4 1067 23290 157 13 32 chr3 63301417 63305185 -96294598 - L1_Mus4 LINE L1 -1541 4342 718 4 1067 587 216 196 25 chr3 63305278 63305482 -96294301 - Tigger5 DNA MER2_type -6 2400 2162 4 1067 5237 270 66 11 chr3 63305485 63307005 -96292778 - Tigger5 DNA MER2_type -352 2054 450 4 1067 990 285 124 52 chr3 63307007 63307484 -96292299 + RCHARR1 DNA MER1_type 1 511 -463 4 133 679 320 39 39 chr3 63307596 63308078 -96291705 - L1MC2 LINE L1 -153 6191 5710 4 1068 621 209 270 0 chr3 63308092 63308288 -96291495 + RCHARR1 DNA MER1_type 484 732 -242 4 1068 282 233 172 11 chr3 63308303 63308390 -96291393 + RCHARR1 DNA MER1_type 873 973 -1 4 1068 1333 269 118 15 chr3 63308390 63308787 -96290996 - Tigger5 DNA MER2_type -1949 457 20 4 1068 488 333 8 0 chr3 63309544 63309670 -96290113 + RSINE1 SINE B4 22 148 -17 4 1068 985 291 84 25 chr3 63309716 63310202 -96289581 + MER45R DNA Tip100 616 1130 -451 4 1068 345 310 10 0 chr3 63310207 63310307 -96289476 - PB1D10 SINE Alu -15 102 2 4 1068 374 210 120 48 chr3 63310307 63310403 -96289380 + MER45R DNA Tip100 1143 1247 -334 4 1068 833 279 108 44 chr3 63310459 63311236 -96288547 + L1MA5 LINE L1 5118 5993 -307 4 1068 409 273 53 35 chr3 63311315 63311486 -96288297 + MER45R DNA Tip100 1225 1398 -183 4 1068 232 285 14 116 chr3 63311563 63311710 -96288073 + MER45R DNA Tip100 1443 1574 -7 4 1068 1559 160 150 3 chr3 63312036 63312356 -96287427 - ORR1B2 LTR MaLR 0 367 1 4 1068 23 0 0 0 chr3 63312441 63312464 -96287319 + AT_rich Low_complexity Low_complexity 1 23 0 4 1068 22 0 0 0 chr3 63312575 63312597 -96287186 + AT_rich Low_complexity Low_complexity 1 22 0 4 1068 509 168 52 26 chr3 63312835 63312951 -96286832 + PB1D9 SINE Alu 2 120 0 4 1068 216 200 0 0 chr3 63312951 63312996 -96286787 + GA-rich Low_complexity Low_complexity 3 47 0 4 1068 414 0 0 0 chr3 63313001 63313047 -96286736 + (CAGGG)n Simple_repeat Simple_repeat 2 47 0 4 1068 914 316 39 47 chr3 63313206 63313279 -96286504 + B4A SINE B4 8 80 -212 4 1068 900 244 5 32 chr3 63313279 63313499 -96286284 + B3 SINE B2 2 215 -1 4 1068 914 316 39 47 chr3 63313499 63313704 -96286079 + B4A SINE B4 81 284 -8 4 1068 230 81 0 26 chr3 63313715 63313753 -96286030 + (GA)n Simple_repeat Simple_repeat 2 38 0 4 1068 34 0 0 0 chr3 63313979 63314013 -96285770 + AT_rich Low_complexity Low_complexity 1 34 0 4 1068 7270 6 0 0 chr3 63314091 63314894 -96284889 + L1Md_T LINE L1 5780 6582 0 4 1068 281 254 114 38 chr3 63314975 63315106 -96284677 + LTR37B LTR ERV1 325 465 -3 4 1068 228 315 64 9 chr3 63315111 63315220 -96284563 + MIRb SINE MIR 109 223 -45 4 1068 610 188 118 73 chr3 63315923 63316101 -96283682 - Lx5 LINE L1 -3 7047 6862 4 1068 21 0 0 0 chr3 63317052 63317073 -96282710 + AT_rich Low_complexity Low_complexity 1 21 0 4 1068 305 309 20 47 chr3 63317119 63317374 -96282409 - L1ME2z LINE L1 -136 6308 6061 4 1068 194 183 27 27 chr3 63317621 63317694 -96282089 + (TA)n Simple_repeat Simple_repeat 1 73 0 4 1068 716 259 141 46 chr3 63318425 63318708 -96281075 - MER2 DNA MER2_type 0 345 36 4 1068 226 315 138 9 chr3 63318976 63319085 -96280698 - L3b LINE CR1 -270 212 90 4 1068 493 294 88 7 chr3 63319532 63319669 -96280114 + B3A SINE B2 1 148 -50 4 1068 377 70 18 0 chr3 63319670 63319727 -96280056 + (CA)n Simple_repeat Simple_repeat 2 59 0 4 1068 198 0 0 0 chr3 63319754 63319776 -96280007 + (TTGG)n Simple_repeat Simple_repeat 2 23 0 4 1068 583 230 66 7 chr3 63319780 63319916 -96279867 - B1_Mur4 SINE Alu -6 144 1 4 1068 1051 126 66 0 chr3 63319945 63320112 -96279671 + B2_Mm1t SINE B2 2 179 -14 4 1068 393 22 0 0 chr3 63320241 63320287 -96279496 + (TTTTA)n Simple_repeat Simple_repeat 4 49 0 4 1068 495 0 0 0 chr3 63320320 63320375 -96279408 + (GGGA)n Simple_repeat Simple_repeat 4 58 0 4 1068 257 54 27 0 chr3 63320735 63320772 -96279011 + U2 snRNA snRNA 1 38 -150 4 1068 30 27 0 0 chr3 63322040 63322077 -96277706 + AT_rich Low_complexity Low_complexity 1 37 0 4 1068 582 276 110 20 chr3 63322535 63322735 -96277048 + MER20 DNA MER1_type 1 218 -1 4 1068 384 405 87 55 chr3 63322770 63322923 -96276860 - MLT1J2 LTR MaLR -89 359 198 4 1068 5764 92 7 15 chr3 63322923 63323747 -96276036 + L1_Mus2 LINE L1 5749 6566 0 4 1068 384 405 87 55 chr3 63323747 63323938 -96275845 - MLT1J2 LTR MaLR -251 197 4 4 1068 8055 25 13 0 chr3 63324330 63325311 -96274472 - L1Md_A LINE L1 -2 6580 5587 4 1068 6308 17 1 0 chr3 63325325 63326085 -96273698 + L1Md_A LINE L1 4808 5568 -315 4 1068 278 287 34 34 chr3 63326519 63326638 -96273145 + RLTR33 LTR ERVK 525 643 -35 4 1068 261 119 0 0 chr3 63327283 63327325 -96272458 + (TG)n Simple_repeat Simple_repeat 2 43 0 4 1068 38800 15 2 6 chr3 63327682 63334094 -96265689 - L1Md_A LINE L1 -2 6580 197 4 1068 637 307 52 48 chr3 63334620 63334893 -96264890 + ORR1E LTR MaLR 1 273 -101 4 1068 877 288 107 21 chr3 63336090 63336512 -96263271 - L1MA9 LINE L1 -10 6302 5845 4 1068 360 0 0 0 chr3 63336531 63336571 -96263212 + (TG)n Simple_repeat Simple_repeat 2 41 0 4 1068 1240 290 35 35 chr3 63336834 63337337 -96262446 - L1MA9 LINE L1 -512 5788 5277 4 1068 756 206 0 8 chr3 63337359 63337491 -96262292 - B1_Mus2 SINE Alu -5 142 12 4 1068 357 198 22 11 chr3 63337498 63337590 -96262193 + Lx5 LINE L1 6955 7047 -3 4 1068 21 0 0 0 chr3 63337991 63338012 -96261771 + AT_rich Low_complexity Low_complexity 1 21 0 4 1068 242 278 42 0 chr3 63338690 63338762 -96261021 + MIR3 SINE MIR 104 178 -30 4 1068 2605 184 0 0 chr3 63339125 63339548 -96260235 - Lx5 LINE L1 -149 6901 6479 4 1068 180 0 0 0 chr3 63339878 63339898 -96259885 + (A)n Simple_repeat Simple_repeat 1 20 0 4 1068 1245 82 0 0 chr3 63340019 63340190 -96259593 + (GAAA)n Simple_repeat Simple_repeat 1 171 0 4 1068 3139 232 22 54 chr3 63340259 63341043 -96258740 + Lx6 LINE L1 6526 7284 -176 4 1068 421 235 0 173 chr3 63341079 63341218 -96258565 + B1F2 SINE Alu 15 129 -20 4 1068 407 214 77 29 chr3 63341318 63341539 -96258244 + Lx9 LINE L1 7395 7640 -4 4 1068 180 0 0 0 chr3 63342478 63342498 -96257285 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 4 1068 226 336 23 78 chr3 63344946 63345075 -96254708 - RLTR12B LTR ERVK -256 272 151 4 1068 256 167 37 0 chr3 63345245 63345299 -96254484 + MIR SINE MIR 102 157 -105 4 1068 1053 285 121 3 chr3 63346699 63347037 -96252746 + MTE2b LTR MaLR 1 378 -1 4 1068 267 31 0 0 chr3 63348252 63348284 -96251499 + (GTTTG)n Simple_repeat Simple_repeat 2 33 0 4 1068 1209 200 59 35 chr3 63348286 63348540 -96251243 + MTD LTR MaLR 18 277 -142 4 1068 247 293 98 57 chr3 63350232 63350355 -96249428 + B4A SINE B4 2 129 -163 4 1068 244 214 18 0 chr3 63350542 63350598 -96249185 + (CA)n Simple_repeat Simple_repeat 2 58 0 4 1068 2555 130 28 48 chr3 63350902 63351451 -96248332 - Lx3_Mus LINE L1 -701 6308 5792 4 1068 3728 88 10 0 chr3 63351466 63351964 -96247819 + Lx3_Mus LINE L1 6365 6867 -142 4 1068 331 322 25 56 chr3 63351992 63352153 -96247630 - LTR48B LTR ERV1 -30 757 602 4 1068 279 277 87 99 chr3 63352174 63352346 -96247437 + RMER15 LTR ERVL 14 183 -392 4 1068 285 237 96 119 chr3 63352419 63352596 -96247187 + RMER15 LTR ERVL 403 575 0 4 1068 708 319 73 42 chr3 63352631 63352988 -96246795 - LTR48B LTR ERV1 -273 371 4 4 1068 400 324 90 45 chr3 63353103 63353371 -96246412 - MER21B LTR ERV1 -136 727 448 4 1068 205 275 14 14 chr3 63353670 63353693 -96246090 - MIRb SINE MIR -71 197 176 4 1068 1285 112 65 15 chr3 63353693 63353892 -96245891 - Lx LINE L1 -1 6653 6445 4 1068 205 275 14 14 chr3 63353892 63353938 -96245845 - MIRb SINE MIR -93 175 129 4 1068 639 282 130 20 chr3 63354243 63354496 -96245287 + MLT1C LTR MaLR 34 314 -153 4 1068 403 328 25 8 chr3 63354779 63354899 -96244884 + RSINE1 SINE B4 4 125 -40 4 1068 411 125 0 0 chr3 63354927 63354999 -96244784 + (TC)n Simple_repeat Simple_repeat 2 73 0 4 1068 252 0 0 0 chr3 63354999 63355027 -96244756 + (CA)n Simple_repeat Simple_repeat 1 28 0 5 1068 22 0 0 0 chr3 63355027 63355049 -96244734 + AT_rich Low_complexity Low_complexity 1 22 0 5 1068 314 359 46 0 chr3 63355368 63355499 -96244284 - L1MEc LINE L1 -6152 248 112 5 1068 291 191 0 0 chr3 63356048 63356116 -96243667 + CT-rich Low_complexity Low_complexity 2 69 0 5 1068 465 19 0 0 chr3 63356118 63356172 -96243611 + (CA)n Simple_repeat Simple_repeat 1 54 0 5 1068 486 311 162 29 chr3 63356652 63356930 -96242853 - LTR82A LTR ERVL -296 576 262 5 1068 372 307 0 86 chr3 63358304 63358443 -96241340 + RSINE1 SINE B4 39 165 0 5 1068 224 211 0 19 chr3 63358445 63358498 -96241285 + (CA)n Simple_repeat Simple_repeat 1 52 0 5 1068 524 240 29 0 chr3 63358624 63358728 -96241055 + B1_Mur2 SINE Alu 1 107 -42 5 1068 397 315 93 7 chr3 63358728 63358771 -96241012 + B4A SINE B4 86 245 -47 5 1068 186 191 0 0 chr3 63358817 63358859 -96240924 + GA-rich Low_complexity Low_complexity 1 42 0 5 1068 1548 204 78 28 chr3 63359068 63359427 -96240356 - RLTR14 LTR ERV1 -5 377 1 5 1068 4512 161 69 30 chr3 63359427 63359790 -96239993 - RLTR14-int LTR ERV1 0 5317 4937 5 1068 3293 77 5 2 chr3 63359790 63360196 -96239587 - MTB_Mm LTR MaLR 0 407 1 5 1068 4512 161 69 30 chr3 63360196 63360701 -96239082 - RLTR14-int LTR ERV1 -381 4936 4415 5 1068 1809 180 87 59 chr3 63360699 63360969 -96238814 - RLTR14-int LTR ERV1 -2862 2455 2184 5 1068 675 37 0 0 chr3 63360969 63361051 -96238732 + (CTTG)n Simple_repeat Simple_repeat 2 83 0 5 1068 1809 180 87 59 chr3 63361051 63361170 -96238613 - RLTR14-int LTR ERV1 -3134 2183 2056 5 1068 198 118 0 0 chr3 63361195 63361229 -96238554 + (TTTTTG)n Simple_repeat Simple_repeat 3 36 0 5 1068 7263 214 62 109 chr3 63361313 63362597 -96237186 - RLTR14-int LTR ERV1 -3252 2065 808 5 1068 234 194 94 31 chr3 63362597 63362661 -96237122 + MER45B DNA Tip100 509 576 -464 5 1068 7263 214 62 109 chr3 63362661 63362911 -96236872 - RLTR14-int LTR ERV1 -3252 807 562 5 1068 222 91 0 0 chr3 63362911 63362944 -96236839 + (CTTG)n Simple_repeat Simple_repeat 2 34 0 5 1068 7263 214 62 109 chr3 63362944 63363511 -96236272 - RLTR14-int LTR ERV1 -4756 561 1 5 1068 1846 210 64 3 chr3 63363511 63363869 -96235914 - RLTR14 LTR ERV1 0 382 3 5 1068 528 252 7 35 chr3 63364401 63364545 -96235238 + B1_Mur1 SINE Alu 5 144 -5 5 1068 363 361 8 0 chr3 63364718 63364840 -96234943 + RSINE1 SINE B4 3 125 -40 5 1068 1897 310 38 82 chr3 63364943 63365776 -96234007 + ORR1D2-int LTR MaLR 755 1551 -29 5 1068 227 291 101 65 chr3 63365760 63365929 -96233854 + ORR1D2 LTR MaLR 9 183 -187 5 1068 522 126 0 0 chr3 63366441 63366544 -96233239 + (TC)n Simple_repeat Simple_repeat 1 103 0 5 1068 441 0 0 0 chr3 63366545 63366594 -96233189 + (TG)n Simple_repeat Simple_repeat 2 50 0 5 1068 333 252 210 34 chr3 63366688 63366807 -96232976 + MER21B LTR ERV1 98 237 -626 5 1068 261 373 82 12 chr3 63366885 63367056 -96232727 + MER21B LTR ERV1 409 591 -272 5 1068 249 228 64 73 chr3 63367535 63367644 -96232139 + RLTR23 LTR ERV1 286 393 -37 5 1068 1608 188 92 6 chr3 63367857 63368194 -96231589 + L1Md_F LINE L1 204 569 -6047 5 1068 18954 107 20 6 chr3 63368191 63369578 -96230205 + L1Md_F LINE L1 2105 3488 -2395 5 1068 203 0 0 36 chr3 63369578 63369606 -96230177 + (TAAAA)n Simple_repeat Simple_repeat 4 30 0 5 1068 18954 107 20 6 chr3 63369606 63371022 -96228761 + L1Md_F LINE L1 3489 4947 -936 5 1068 4693 90 23 10 chr3 63371022 63371639 -96228144 + L1_Mus1 LINE L1 5937 6561 -6 5 1068 189 0 0 0 chr3 63371672 63371693 -96228090 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 5 1068 296 343 19 0 chr3 63371795 63371900 -96227883 + MER21B LTR ERV1 612 718 -145 5 1068 319 220 11 11 chr3 63372011 63372103 -96227680 + GA-rich Low_complexity Low_complexity 2 93 0 5 1068 282 297 116 25 chr3 63372138 63372259 -96227524 + MLT1A1 LTR MaLR 232 395 -13 5 1068 1100 200 71 52 chr3 63372882 63373236 -96226547 - MTC-int LTR MaLR -884 374 123 5 1068 468 0 0 0 chr3 63373236 63373288 -96226495 + (TG)n Simple_repeat Simple_repeat 1 52 0 5 1068 255 31 0 0 chr3 63373330 63373362 -96226421 + (TG)n Simple_repeat Simple_repeat 1 32 0 5 1068 629 302 0 26 chr3 63373365 63373518 -96226265 - RSINE1 SINE B4 -7 158 10 5 1068 3777 109 4 4 chr3 63373834 63374341 -96225442 + Lx LINE L1 6141 6647 -7 5 1068 2210 122 18 15 chr3 63375144 63375470 -96224313 - ORR1A2 LTR MaLR 0 327 1 5 1068 375 23 0 0 chr3 63375536 63375580 -96224203 + (CA)n Simple_repeat Simple_repeat 1 44 0 5 1068 1009 178 83 10 chr3 63378688 63378892 -96220891 - MTC LTR MaLR -201 220 2 5 1068 259 25 50 0 chr3 63379033 63379073 -96220710 + (TG)n Simple_repeat Simple_repeat 2 43 0 5 1068 1610 252 26 24 chr3 63379279 63379511 -96220272 + MTE2b LTR MaLR 1 233 -146 5 1068 1094 135 0 98 chr3 63379511 63379683 -96220100 + B2_Mm2 SINE B2 2 160 -35 5 1068 444 37 0 0 chr3 63379683 63379737 -96220046 + (TAAG)n Simple_repeat Simple_repeat 1 54 0 5 1068 1094 135 0 98 chr3 63379737 63379778 -96220005 + B2_Mm2 SINE B2 161 194 -1 5 1068 1610 252 26 24 chr3 63379778 63379923 -96219860 + MTE2b LTR MaLR 234 379 0 5 1068 267 307 102 30 chr3 63380471 63380652 -96219131 + L2b LINE L2 3198 3381 -6 5 1068 321 47 0 0 chr3 63380822 63380865 -96218918 + (GTTTG)n Simple_repeat Simple_repeat 2 44 0 5 1068 910 239 43 0 chr3 63380996 63381184 -96218599 - B3 SINE B2 -19 197 2 5 1068 1939 101 63 10 chr3 63381258 63381557 -96218226 - ORR1A3 LTR MaLR -8 318 4 5 1068 376 263 30 0 chr3 63381557 63381656 -96218127 - PB1D10 SINE Alu -15 102 1 5 1068 1262 165 75 18 chr3 63382585 63382749 -96217034 + ORR1D1 LTR MaLR 3 164 -210 5 1068 513 0 0 0 chr3 63382749 63382806 -96216977 + (TC)n Simple_repeat Simple_repeat 1 57 0 5 1068 1262 165 75 18 chr3 63382806 63382869 -96216914 + ORR1D1 LTR MaLR 165 243 -131 5 1068 294 302 0 0 chr3 63383111 63383174 -96216609 - ID4_ SINE ID -7 76 14 5 1068 235 129 45 61 chr3 63383952 63384018 -96215765 + CT-rich Low_complexity Low_complexity 2 66 0 5 1068 216 0 0 0 chr3 63384957 63384981 -96214802 + (A)n Simple_repeat Simple_repeat 1 24 0 5 1068 860 289 68 88 chr3 63385370 63385825 -96213958 - MER31A LTR ERV1 -2 483 38 5 1068 196 261 0 0 chr3 63385872 63385918 -96213865 + L2b LINE L2 3322 3367 -8 5 1068 208 391 55 0 chr3 63386357 63386467 -96213316 + L2c LINE L2 3032 3147 -240 5 1068 279 0 0 0 chr3 63386769 63386800 -96212983 + (CA)n Simple_repeat Simple_repeat 1 31 0 5 1068 23 105 0 0 chr3 63388465 63388551 -96211232 + AT_rich Low_complexity Low_complexity 1 86 0 5 1068 200 184 154 44 chr3 63389652 63389743 -96210040 - L3 LINE CR1 -2283 2206 2106 5 1068 223 318 0 0 chr3 63390544 63390610 -96209173 + L3 LINE CR1 4334 4399 -90 5 1068 723 262 34 23 chr3 63390855 63391013 -96208770 + B3A SINE B2 5 165 -33 5 1068 363 89 0 0 chr3 63391013 63391069 -96208714 + (CA)n Simple_repeat Simple_repeat 2 57 0 5 1068 723 262 34 23 chr3 63391069 63391086 -96208697 + B3A SINE B2 166 182 -16 5 1068 22 35 0 0 chr3 63391117 63391146 -96208637 + AT_rich Low_complexity Low_complexity 1 29 0 5 1068 423 0 0 0 chr3 63391345 63391392 -96208391 + (TAAA)n Simple_repeat Simple_repeat 4 50 0 5 1068 3126 176 50 49 chr3 63391434 63392952 -96206831 + L1Md_F LINE L1 123 1564 -2253 5 1068 6404 127 4 5 chr3 63392941 63393958 -96205825 + L1_Mm LINE L1 3518 4533 -1350 5 1068 8577 22 1 1 chr3 63393957 63395419 -96204364 - L1Md_T LINE L1 0 6582 5121 5 1068 452 167 77 11 chr3 63395419 63395510 -96204273 + L1_Mur1 LINE L1 4522 4618 -1268 5 1068 982 42 17 0 chr3 63395478 63395596 -96204187 + L1Md_F2 LINE L1 5467 5586 -297 5 1068 7630 88 10 10 chr3 63395596 63396592 -96203191 + L1Md_F2 LINE L1 5587 6582 0 5 1068 1274 174 279 3 chr3 63396835 63397147 -96202636 + MTC LTR MaLR 24 421 0 5 1068 319 338 96 51 chr3 63397742 63397898 -96201885 - RSINE1 SINE B4 0 165 3 5 1068 3091 83 8 2 chr3 63400108 63400506 -96199277 - MTB LTR MaLR 0 400 1 5 1068 315 0 0 0 chr3 63400773 63400808 -96198975 + (CA)n Simple_repeat Simple_repeat 2 36 0 5 1068 487 29 14 14 chr3 63401391 63401461 -96198322 + (TTTTG)n Simple_repeat Simple_repeat 4 73 0 5 1068 1204 76 7 0 chr3 63401462 63401607 -96198176 - B1_Mus1 SINE Alu -2 146 1 5 1068 495 193 108 18 chr3 63401631 63401742 -96198041 - ID_B1 SINE B4 -1 223 103 5 1068 373 185 16 25 chr3 63401788 63401910 -96197873 + (TA)n Simple_repeat Simple_repeat 1 121 0 5 1068 252 0 0 0 chr3 63401912 63401940 -96197843 + (CA)n Simple_repeat Simple_repeat 2 29 0 5 1068 537 144 0 0 chr3 63401940 63402030 -96197753 + (TG)n Simple_repeat Simple_repeat 2 91 0 5 1068 189 0 0 0 chr3 63402605 63402626 -96197157 + (A)n Simple_repeat Simple_repeat 1 21 0 5 1068 357 283 10 20 chr3 63403437 63403538 -96196245 + PB1D10 SINE Alu 11 110 -7 5 1068 3358 229 87 29 chr3 63404015 63404950 -96194833 - Lx6 LINE L1 -9 7451 6237 5 1068 8360 109 57 15 chr3 63404946 63406785 -96192998 - L1_Mus4 LINE L1 -1 6635 4738 5 1068 714 105 0 0 chr3 63406785 63406890 -96192893 + (TCTTG)n Simple_repeat Simple_repeat 2 106 0 5 1068 8360 108 36 5 chr3 63406890 63407015 -96192768 - L1_Mus4 LINE L1 -1146 4737 4609 5 1068 1390 245 6 70 chr3 63407015 63407422 -96192361 - MTE2a LTR MaLR -11 368 8 5 1068 213 121 0 0 chr3 63407461 63407494 -96192289 + (TAA)n Simple_repeat Simple_repeat 1 33 0 5 1068 227 311 22 22 chr3 63407533 63407625 -96192158 + MIR SINE MIR 84 175 -87 5 1068 29 47 0 0 chr3 63407986 63408029 -96191754 + AT_rich Low_complexity Low_complexity 1 43 0 5 1068 456 128 0 0 chr3 63408179 63408257 -96191526 + (TATG)n Simple_repeat Simple_repeat 2 79 0 5 1068 23 33 0 0 chr3 63408277 63408307 -96191476 + AT_rich Low_complexity Low_complexity 1 30 0 5 1068 562 261 51 0 chr3 63408307 63408445 -96191338 + B1F1 SINE Alu 3 147 -2 5 1068 395 370 7 7 chr3 63408619 63408755 -96191028 - L2b LINE L2 -1 3374 3239 5 1068 293 287 67 48 chr3 63409307 63409472 -96190311 - MLT1B LTR MaLR 0 390 223 5 1068 902 308 62 0 chr3 63410145 63410453 -96189330 + MER21B LTR ERV1 452 778 -85 5 1068 393 22 0 0 chr3 63411175 63411221 -96188562 + (TG)n Simple_repeat Simple_repeat 2 47 0 5 1068 439 266 38 31 chr3 63411272 63411431 -96188352 + L1MA9 LINE L1 6152 6311 -1 5 1068 259 336 59 25 chr3 63411528 63411647 -96188136 - MER5A DNA MER1_type 0 189 67 5 1068 876 306 87 16 chr3 63411802 63412307 -96187476 + MLT1B-int LTR MaLR 1 663 -708 5 1068 2512 52 0 0 chr3 63412432 63412720 -96187063 + L1_Mus1 LINE L1 6278 6565 -2 5 1068 572 320 103 25 chr3 63412948 63413328 -96186455 + MLT1B-int LTR MaLR 1438 1721 -14 5 1068 743 255 91 53 chr3 63413576 63413970 -96185813 - RLTR9E LTR ERVK 0 409 1 5 1068 372 278 18 9 chr3 63414018 63414127 -96185656 + MLT1B LTR MaLR 281 390 0 5 1068 581 242 119 76 chr3 63414161 63414438 -96185345 + B4A SINE B4 3 291 -1 5 1068 238 208 19 19 chr3 63414439 63414493 -96185290 + (CA)n Simple_repeat Simple_repeat 1 54 0 5 1068 188 135 0 26 chr3 63414497 63414535 -96185248 + (TATAA)n Simple_repeat Simple_repeat 1 37 0 6 1068 425 270 0 9 chr3 63414537 63414649 -96185134 + MER5A DNA MER1_type 61 171 -18 6 1068 374 0 22 0 chr3 63415402 63415448 -96184335 + (TG)n Simple_repeat Simple_repeat 1 47 0 6 1068 207 283 130 19 chr3 63415749 63415857 -96183926 + L2c LINE L2 3072 3191 -196 6 1068 321 244 174 0 chr3 63416439 63416525 -96183258 + RSINE1 SINE B4 5 105 -60 6 1068 644 108 8 23 chr3 63416576 63416709 -96183074 + (TAGA)n Simple_repeat Simple_repeat 4 134 0 6 1068 280 275 53 100 chr3 63416895 63417065 -96182718 + LTR48 LTR ERV1 620 781 -6 6 1068 260 326 72 59 chr3 63418128 63418281 -96181502 - MIRm SINE MIR -119 157 3 6 1068 222 246 30 4 chr3 63418731 63418802 -96180981 - PB1D7 SINE Alu -46 81 8 6 1068 189 74 0 0 chr3 63419253 63419280 -96180503 + (CA)n Simple_repeat Simple_repeat 2 28 0 6 1068 396 0 0 0 chr3 63419794 63419838 -96179945 + (CA)n Simple_repeat Simple_repeat 2 45 0 6 1068 291 338 91 76 chr3 63420621 63421015 -96178768 - L2c LINE L2 -47 3379 2975 6 1068 2359 179 30 42 chr3 63421363 63421789 -96177994 - MTC LTR MaLR 0 421 1 6 1068 4113 57 4 69 chr3 63421835 63422383 -96177400 + RLTR1B LTR ERV1 1 512 0 6 1068 260 306 210 56 chr3 63422390 63422657 -96177126 + LTR48 LTR ERV1 1 308 -479 6 1068 835 215 28 42 chr3 63422715 63422929 -96176854 - ORR1D1 LTR MaLR 0 374 164 6 1068 555 153 0 0 chr3 63422929 63423060 -96176723 + GA-rich Low_complexity Low_complexity 1 131 0 6 1068 732 227 94 44 chr3 63423060 63423240 -96176543 - ORR1D1 LTR MaLR -185 189 1 6 1068 328 281 58 68 chr3 63423285 63423388 -96176395 + PB1D10 SINE Alu 16 117 0 6 1068 590 296 39 34 chr3 63423382 63423588 -96176195 + LTR48 LTR ERV1 404 610 -177 6 1068 926 254 24 155 chr3 63423699 63424035 -96175748 + MTE2a LTR MaLR 10 301 -78 6 1068 31860 87 9 4 chr3 63424042 63429093 -96170690 + L1Md_F LINE L1 392 5468 -415 6 1068 232 297 151 59 chr3 63429093 63429211 -96170572 + MTE2a LTR MaLR 202 337 -82 6 1068 7774 78 6 15 chr3 63429211 63430216 -96169567 + L1Md_F2 LINE L1 5587 6582 0 6 1068 388 219 24 0 chr3 63430216 63430298 -96169485 + MTE2a LTR MaLR 296 379 0 6 1068 382 210 83 128 chr3 63431396 63431576 -96168207 + LTR48 LTR ERV1 605 776 -11 6 1068 971 112 13 7 chr3 63432738 63432891 -96166892 - Lx LINE L1 -3 6651 6498 6 1068 246 222 0 0 chr3 63433127 63433181 -96166602 + B3A SINE B2 23 76 -122 6 1068 471 35 0 0 chr3 63433257 63433314 -96166469 + (CA)n Simple_repeat Simple_repeat 1 57 0 6 1068 25 0 0 0 chr3 63433316 63433341 -96166442 + AT_rich Low_complexity Low_complexity 1 25 0 6 1068 523 263 43 48 chr3 63433341 63433529 -96166254 + MER89 LTR ERV1 366 552 -7 6 1068 374 340 94 43 chr3 63433785 63434062 -96165721 - ORR1D2 LTR MaLR -53 317 27 6 1068 980 286 15 11 chr3 63434090 63434355 -96165428 - MTE-int LTR MaLR -57 1523 1258 6 1068 1675 202 94 19 chr3 63434435 63434808 -96164975 - MTC LTR MaLR -8 413 13 6 1068 654 312 191 33 chr3 63434840 63435175 -96164608 - MTE-int LTR MaLR -455 1125 738 6 1068 322 258 129 0 chr3 63435269 63435362 -96164421 - B4 SINE B4 -69 223 119 6 1068 568 245 87 51 chr3 63435980 63436208 -96163575 - MTE-int LTR MaLR -1072 508 245 6 1068 829 234 85 5 chr3 63437433 63437622 -96162161 - B3 SINE B2 -8 208 5 6 1068 3466 50 0 2 chr3 63438278 63438677 -96161106 + L1_Mus1 LINE L1 6170 6567 0 6 133 6235 166 17 64 chr3 63438769 63439301 -96160482 + RLTR21 LTR ERVK 2 543 -1029 6 1069 234 0 0 0 chr3 63439301 63439327 -96160456 + (TTA)n Simple_repeat Simple_repeat 1 26 0 6 1069 1318 146 32 14 chr3 63439332 63439548 -96160235 - Lx3C LINE L1 -2 6974 6755 6 1069 6235 166 17 64 chr3 63439548 63440100 -96159683 + RLTR21 LTR ERVK 544 1072 -500 6 1069 483 18 0 0 chr3 63440100 63440156 -96159627 + (TATG)n Simple_repeat Simple_repeat 1 56 0 6 1069 6235 166 17 64 chr3 63440156 63440246 -96159537 + RLTR21 LTR ERVK 1073 1128 -444 6 1069 389 54 18 0 chr3 63440246 63440302 -96159481 + (TATG)n Simple_repeat Simple_repeat 3 59 0 6 1069 6235 179 22 93 chr3 63440302 63440411 -96159372 + RLTR21 LTR ERVK 1129 1253 -151 6 1069 405 0 0 0 chr3 63440411 63440456 -96159327 + (TG)n Simple_repeat Simple_repeat 1 45 0 6 1069 489 219 38 183 chr3 63440456 63440636 -96159147 + RLTR21 LTR ERVK 1254 1404 0 6 1069 297 0 83 0 chr3 63440659 63440707 -96159076 + (CAAA)n Simple_repeat Simple_repeat 1 52 0 6 1069 748 238 6 41 chr3 63441405 63441576 -96158207 - MTE-int LTR MaLR -1415 165 1 6 1069 582 155 99 15 chr3 63441751 63441882 -96157901 - Lx LINE L1 -7 6647 6506 6 1069 922 122 6 3 chr3 63441880 63442045 -96157738 - Lx LINE L1 -243 6323 6157 6 1069 799 269 55 62 chr3 63442988 63443058 -96156725 + L1_Mur3 LINE L1 4242 4311 -1569 6 1069 300 121 0 0 chr3 63443058 63443116 -96156667 + Lx2 LINE L1 6940 6997 0 6 1069 799 269 55 62 chr3 63443116 63443484 -96156299 + L1_Mur3 LINE L1 4312 4677 -1203 6 1069 434 259 25 44 chr3 63443484 63443678 -96156105 - L1M4 LINE L1 -759 5419 5215 6 1069 1445 319 84 44 chr3 63444286 63445405 -96154378 + L1_Rod LINE L1 4673 5836 -11 6 1069 904 268 79 105 chr3 63445490 63445920 -96153863 + RLTR23 LTR ERV1 8 426 -4 6 1069 189 107 0 0 chr3 63448016 63448044 -96151739 + (A)n Simple_repeat Simple_repeat 1 28 0 6 1069 886 196 0 0 chr3 63448812 63448955 -96150828 + B1_Mur4 SINE Alu 1 143 -7 6 1069 184 79 79 0 chr3 63448956 63448994 -96150789 + (CAAA)n Simple_repeat Simple_repeat 1 41 0 6 1069 1271 276 32 45 chr3 63450187 63450563 -96149220 + MTE2b LTR MaLR 4 374 -5 6 1069 226 306 80 18 chr3 63451146 63451259 -96148524 - HAL1 LINE L1 -914 1593 1474 6 1069 3035 47 0 85 chr3 63451453 63451851 -96147932 + RLTR10B2 LTR ERVK 1 364 -1 6 1069 261 0 0 0 chr3 63451851 63451880 -96147903 + (TTTA)n Simple_repeat Simple_repeat 1 29 0 6 1069 2313 68 161 0 chr3 63451880 63452264 -96147519 - RLTR47_MM LTR ERV1 -86 446 1 6 1069 1623 175 34 21 chr3 63452765 63453092 -96146691 + RLTR31_Mm LTR ERVK 1 331 -230 6 1069 1820 297 71 67 chr3 63453119 63454489 -96145294 - MuRRS4-int LTR ERV1 -2036 5520 2952 6 1069 222 149 21 0 chr3 63454709 63454756 -96145027 + (TTTG)n Simple_repeat Simple_repeat 2 49 0 6 1069 24 32 0 0 chr3 63454875 63454906 -96144877 + AT_rich Low_complexity Low_complexity 1 31 0 6 1069 1038 95 0 0 chr3 63455209 63455357 -96144426 + (TTTC)n Simple_repeat Simple_repeat 1 148 0 6 1069 216 0 0 0 chr3 63455357 63455380 -96144403 + (CA)n Simple_repeat Simple_repeat 1 24 0 6 1069 1765 157 81 6 chr3 63455391 63455711 -96144072 - ORR1B1 LTR MaLR -10 384 41 6 1069 447 19 0 0 chr3 63455848 63455900 -96143883 + (GA)n Simple_repeat Simple_repeat 1 52 0 6 1069 2252 161 30 45 chr3 63456077 63456481 -96143302 + Lx3C LINE L1 6573 6970 -6 6 1069 1158 194 65 211 chr3 63458457 63458889 -96140894 + ORR1D1 LTR MaLR 6 374 0 6 1069 1491 273 41 0 chr3 63458889 63459252 -96140531 + MTEa LTR MaLR 2 379 0 6 1069 21 0 0 0 chr3 63459372 63459393 -96140390 + AT_rich Low_complexity Low_complexity 1 21 0 6 1069 426 217 50 109 chr3 63459427 63459546 -96140237 - MLT1C LTR MaLR -56 411 300 6 1069 1116 42 0 0 chr3 63459555 63459697 -96140086 + (TC)n Simple_repeat Simple_repeat 2 143 0 6 1069 240 35 0 0 chr3 63459697 63459725 -96140058 + (TG)n Simple_repeat Simple_repeat 2 30 0 6 1069 248 293 27 0 chr3 63459887 63459962 -96139821 - RMER15 LTR ERVL -18 557 481 6 1069 538 198 0 0 chr3 63459962 63460058 -96139725 - ORR1C1 LTR MaLR 0 378 283 6 1069 276 105 0 0 chr3 63460059 63460097 -96139686 + RLTR13D4 LTR ERVK 1 38 -995 6 1069 5724 105 10 1 chr3 63460099 63461484 -96138299 - L1Md_F LINE L1 -4141 1742 331 6 1069 908 206 22 27 chr3 63461507 63461692 -96138091 - RMER15 LTR ERVL -89 486 303 6 1069 485 277 29 46 chr3 63461757 63461931 -96137852 - RMER15 LTR ERVL -383 192 22 6 1069 250 151 55 36 chr3 63461940 63461995 -96137788 - RMER15 LTR ERVL -506 69 14 6 1069 286 364 46 52 chr3 63462340 63462514 -96137269 - ORR1E LTR MaLR -186 173 1 6 1069 1004 32 130 0 chr3 63462784 63462907 -96136876 + B1_Mus1 SINE Alu 1 139 -9 6 1069 194 0 39 0 chr3 63462907 63462933 -96136850 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 6 1069 939 273 175 0 chr3 63464277 63464676 -96135107 - Lx7 LINE L1 -365 7331 6863 6 1069 204 40 0 0 chr3 63464742 63464767 -96135016 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 6 1069 508 272 51 28 chr3 63465145 63465323 -96134460 - RLTR42-int LTR ERVK -1088 4434 4253 6 1069 423 250 24 24 chr3 63465647 63465770 -96134013 - RLTR42-int LTR ERVK -1296 4226 4104 6 1069 1957 109 72 3 chr3 63465933 63466264 -96133519 - RLTR15 LTR ERVK -5 354 1 6 1069 3004 87 0 5 chr3 63467880 63468272 -96131511 + L1_Mus4 LINE L1 6247 6636 0 6 1069 201 74 0 0 chr3 63468874 63468901 -96130882 + (TC)n Simple_repeat Simple_repeat 2 28 0 6 1069 21 0 0 0 chr3 63469237 63469258 -96130525 + AT_rich Low_complexity Low_complexity 1 21 0 6 1069 273 323 43 0 chr3 63469785 63469878 -96129905 - Charlie4 DNA MER1_type -1813 148 52 6 1069 1278 211 126 0 chr3 63469879 63470164 -96129619 - RMER1C Other Other -15 1327 1007 6 1069 1010 51 0 74 chr3 63470164 63470354 -96129429 + (TTCCC)n Simple_repeat Simple_repeat 1 176 0 6 1069 510 170 0 0 chr3 63470356 63470450 -96129333 + C-rich Low_complexity Low_complexity 4 97 0 6 1069 366 80 0 0 chr3 63470450 63470500 -96129283 + (TTTC)n Simple_repeat Simple_repeat 2 51 0 6 1069 674 297 85 12 chr3 63470505 63470764 -96129019 - RMER1C Other Other -342 1000 723 6 1069 658 236 56 28 chr3 63471285 63471464 -96128319 - RMER1C Other Other -1046 296 113 6 1069 3948 112 23 12 chr3 63471798 63472374 -96127409 - Lx2 LINE L1 -1 6996 6415 6 1069 513 0 0 0 chr3 63472506 63472563 -96127220 + (TG)n Simple_repeat Simple_repeat 2 58 0 6 1069 38917 31 1 0 chr3 63473649 63480915 -96118868 - L1Md_T LINE L1 0 6585 1 6 1069 435 119 0 0 chr3 63481101 63481168 -96118615 + (TG)n Simple_repeat Simple_repeat 2 68 0 6 1069 244 250 11 43 chr3 63481840 63481932 -96117851 + GA-rich Low_complexity Low_complexity 3 91 0 6 1069 1245 303 57 3 chr3 63482496 63482847 -96116936 + MTEa LTR MaLR 10 379 0 6 1069 346 300 71 26 chr3 63483028 63483182 -96116601 - LTR48 LTR ERV1 -625 162 2 6 1069 315 237 17 0 chr3 63483696 63483755 -96116028 + RSINE1 SINE B4 3 62 -103 6 1069 1987 176 0 78 chr3 63484069 63484452 -96115331 - ORR1B1 LTR MaLR 0 394 42 6 1069 748 228 7 14 chr3 63484518 63484665 -96115118 - B1F2 SINE Alu -1 148 3 6 1069 1197 107 3 7 chr3 63484725 63485006 -96114777 + (TTTC)n Simple_repeat Simple_repeat 1 280 0 6 1069 233 154 0 0 chr3 63485021 63485060 -96114723 - RMER21B LTR ERV1 0 842 804 6 1069 712 215 386 58 chr3 63485116 63485283 -96114500 - RMER21B LTR ERV1 -289 553 433 6 1069 5934 136 15 6 chr3 63485283 63486157 -96113626 + Lx LINE L1 5773 6654 0 7 1069 712 237 320 13 chr3 63486157 63486366 -96113417 - RMER21B LTR ERV1 -410 432 147 6 1069 461 186 12 0 chr3 63487087 63487173 -96112610 + Lx9 LINE L1 6965 7051 -593 7 1069 1564 181 58 3 chr3 63487179 63487472 -96112311 + ORR1B1 LTR MaLR 86 394 0 7 1069 561 174 205 0 chr3 63487502 63487663 -96112120 + Lx9 LINE L1 7438 7631 -13 7 1069 378 0 0 0 chr3 63487663 63487705 -96112078 + (GAAAA)n Simple_repeat Simple_repeat 5 46 0 7 1069 360 0 0 0 chr3 63487785 63487825 -96111958 + (TA)n Simple_repeat Simple_repeat 2 41 0 7 1069 192 40 0 0 chr3 63488410 63488435 -96111348 + (TG)n Simple_repeat Simple_repeat 2 26 0 7 1069 1751 173 15 31 chr3 63488580 63488918 -96110865 - ORR1A4 LTR MaLR -36 334 1 7 1069 1258 221 82 68 chr3 63488917 63489282 -96110501 + ORR1C2 LTR MaLR 1 370 -14 7 1069 438 20 0 0 chr3 63489332 63489383 -96110400 + (TAAA)n Simple_repeat Simple_repeat 3 53 0 7 1069 322 323 212 10 chr3 63489383 63489586 -96110197 + MLT2B1 LTR ERVL 144 387 -133 7 1069 207 125 0 0 chr3 63489612 63489652 -96110131 + (TC)n Simple_repeat Simple_repeat 1 40 0 7 1069 713 314 34 24 chr3 63489739 63490033 -96109750 + ERVL-B4-int LTR ERVL 117 413 -5301 7 1069 782 322 28 14 chr3 63490320 63490676 -96109107 + L1MC4a LINE L1 7520 7880 -2 7 1069 319 294 61 52 chr3 63490731 63490846 -96108937 + PB1 SINE Alu 10 125 -2 7 1069 1119 52 59 0 chr3 63491151 63491287 -96108496 + B1_Mm SINE Alu 3 146 -1 7 1069 350 122 0 35 chr3 63491288 63491373 -96108410 + A-rich Low_complexity Low_complexity 1 82 0 7 1069 1248 89 67 6 chr3 63491417 63491597 -96108186 - B2_Mm1t SINE B2 -2 191 1 7 1069 1949 172 58 11 chr3 63493042 63493401 -96106382 - ORR1C1 LTR MaLR 0 378 3 7 1069 519 332 8 59 chr3 63493458 63493714 -96106069 - L1M2 LINE L1 -510 5781 5539 7 1069 490 300 70 70 chr3 63494340 63494422 -96105361 - B4A SINE B4 -120 172 95 7 1069 330 26 0 0 chr3 63494422 63494461 -96105322 + (CCA)n Simple_repeat Simple_repeat 3 41 0 7 1069 490 300 70 70 chr3 63494461 63494550 -96105233 - B4A SINE B4 -198 94 2 7 1069 314 221 63 25 chr3 63494566 63494645 -96105138 - PB1D10 SINE Alu 0 117 36 7 1069 2318 160 70 5 chr3 63495101 63495471 -96104312 - ORR1B1 LTR MaLR 0 394 1 7 1069 426 319 29 25 chr3 63495481 63495723 -96104060 + MERVL-int LTR ERVL 2347 2657 -2828 7 1069 928 280 16 32 chr3 63496014 63496265 -96103518 + B4A SINE B4 2 248 -44 7 1069 278 341 33 22 chr3 63496281 63496371 -96103412 - ORR1E LTR MaLR -248 111 21 7 1069 22 0 0 0 chr3 63497054 63497076 -96102707 + AT_rich Low_complexity Low_complexity 1 22 0 7 1069 212 200 0 43 chr3 63497109 63497156 -96102627 + G-rich Low_complexity Low_complexity 2 46 0 7 1069 1186 94 64 12 chr3 63497156 63497328 -96102455 - B2_Mm2 SINE B2 -14 181 1 7 1069 251 287 19 29 chr3 63497379 63497483 -96102300 + LTR16D LTR ERVL 472 574 -77 7 1069 497 305 0 32 chr3 63497501 63497657 -96102126 + RSINE1 SINE B4 3 153 -12 7 1069 240 311 138 8 chr3 63498310 63498433 -96101350 - L2c LINE L2 -6 3381 3243 7 1069 393 110 0 0 chr3 63499447 63499520 -96100263 + (CA)n Simple_repeat Simple_repeat 2 74 0 7 1069 770 281 31 0 chr3 63499715 63499907 -96099876 + B3 SINE B2 5 202 -14 7 1069 22 80 0 0 chr3 63499917 63499967 -96099816 + AT_rich Low_complexity Low_complexity 1 50 0 7 1069 611 206 167 0 chr3 63500458 63500584 -96099199 - B1_Mur1 SINE Alu -2 147 1 1 1069 208 355 8 16 chr3 63507456 63507579 -96092204 + CT-rich Low_complexity Low_complexity 2 123 0 2 1069 507 246 17 17 chr3 63509093 63509209 -96090574 - PB1D10 SINE Alu -1 116 1 3 1069 965 102 11 1 chr3 63510275 63510420 -96089363 + B2_Mm2 SINE B2 2 159 -57 4 1069 25 0 0 0 chr3 63511848 63511873 -96087910 + AT_rich Low_complexity Low_complexity 1 25 0 5 1069 256 339 77 0 chr3 63511928 63512096 -96087687 + L1M5 LINE L1 5589 5769 -393 6 1069 4045 132 14 42 chr3 63514011 63514637 -96085146 + RMER19C LTR ERVK 1 609 -2 7 1069 456 243 26 18 chr3 63514649 63514762 -96085021 + RSINE1 SINE B4 15 128 -37 8 1069 300 296 31 0 chr3 63515414 63515512 -96084271 - MER57C2 LTR ERV1 -56 378 278 9 1069 1235 28 21 0 chr3 63515518 63515660 -96084123 + B1_Mus2 SINE Alu 2 146 -1 1 1069 586 55 22 11 chr3 63515689 63515780 -96084003 + (GAAAA)n Simple_repeat Simple_repeat 2 93 0 1 1069 573 301 43 75 chr3 63516328 63516608 -96083175 + B4A SINE B4 2 272 -20 1 1069 188 35 35 0 chr3 63516781 63516810 -96082973 + (CAAAAA)n Simple_repeat Simple_repeat 2 31 0 1 1069 934 119 53 6 chr3 63516857 63517026 -96082757 + L1Md_F2 LINE L1 6405 6581 -1 1 1069 501 17 0 0 chr3 63517026 63517084 -96082699 + (GA)n Simple_repeat Simple_repeat 2 59 0 1 1069 922 196 78 21 chr3 63519150 63519343 -96080440 + B3 SINE B2 2 205 -11 1 1069 338 277 171 32 chr3 63520151 63520463 -96079320 + L1MB5 LINE L1 5718 6077 -103 1 1069 393 22 0 0 chr3 63521214 63521260 -96078523 + (TG)n Simple_repeat Simple_repeat 2 47 0 1 1069 189 107 0 0 chr3 63521271 63521299 -96078484 + (TCTG)n Simple_repeat Simple_repeat 3 30 0 1 1069 286 200 57 0 chr3 63521493 63521563 -96078220 - L1_Rod LINE L1 -624 5223 5150 2 1069 2600 293 63 51 chr3 63521568 63522637 -96077146 + Lx8 LINE L1 6391 7471 -2 2 1069 357 24 0 0 chr3 63523296 63523338 -96076445 + (CA)n Simple_repeat Simple_repeat 1 42 0 2 1069 618 286 98 51 chr3 63524066 63524494 -96075289 - L1ME3A LINE L1 -14 6159 5712 2 1069 306 297 159 50 chr3 63524739 63525022 -96074761 - L1ME3A LINE L1 -774 5372 5059 2 1069 229 244 47 35 chr3 63525446 63525531 -96074252 - MARNA DNA Mariner -208 378 293 2 1069 227 308 12 25 chr3 63526256 63526336 -96073447 + MIR3 SINE MIR 98 176 -32 2 1069 189 0 0 0 chr3 63526964 63526985 -96072798 + (A)n Simple_repeat Simple_repeat 1 21 0 2 1069 216 337 11 32 chr3 63527119 63527214 -96072569 - MIRc SINE MIR -141 127 35 2 1069 225 0 0 0 chr3 63527287 63527312 -96072471 + (A)n Simple_repeat Simple_repeat 1 25 0 2 1069 617 261 75 35 chr3 63528128 63528515 -96071268 + RLTR12B LTR ERVK 12 499 -29 2 1069 2505 248 83 18 chr3 63529387 63530107 -96069676 - Tigger1 DNA MER2_type -1633 785 19 3 1069 21 0 0 0 chr3 63530254 63530275 -96069508 + AT_rich Low_complexity Low_complexity 1 21 0 3 1069 351 0 0 0 chr3 63531250 63531289 -96068494 + (CATA)n Simple_repeat Simple_repeat 1 39 0 3 1069 416 229 64 9 chr3 63531465 63531575 -96068208 + MER5B DNA MER1_type 59 174 -4 3 1069 237 33 0 0 chr3 63532620 63532650 -96067133 + (A)n Simple_repeat Simple_repeat 1 30 0 3 1069 334 263 35 57 chr3 63532899 63533040 -96066743 + L2a LINE L2 3223 3360 -66 3 1069 222 150 0 0 chr3 63533530 63533570 -96066213 + (TG)n Simple_repeat Simple_repeat 2 41 0 3 1069 287 217 33 0 chr3 63533877 63533937 -96065846 + PB1D7 SINE Alu 51 112 -8 3 1069 211 345 24 0 chr3 63533953 63534037 -96065746 + B4A SINE B4 3 88 -204 3 1069 361 52 38 25 chr3 63534037 63534116 -96065667 + (CAAAA)n Simple_repeat Simple_repeat 3 82 0 3 1069 1130 166 80 14 chr3 63535082 63535303 -96064480 + ORR1B2 LTR MaLR 114 328 -39 4 1069 834 288 90 3 chr3 63535686 63536007 -96063776 + L1MB2 LINE L1 5712 6060 -111 4 1069 2525 46 0 0 chr3 63536009 63536314 -96063469 - L1_Mus1 LINE L1 -552 6015 5711 4 1069 4565 65 2 0 chr3 63536314 63536855 -96062928 + L1_Mus1 LINE L1 6026 6567 0 4 1069 239 266 112 41 chr3 63536929 63537027 -96062756 + MLT1A LTR MaLR 261 365 -9 4 1069 293 310 23 11 chr3 63537575 63537663 -96062120 + B4 SINE B4 35 123 -169 4 1069 1994 90 0 0 chr3 63537683 63537928 -96061855 + L1_Mus1 LINE L1 6323 6567 0 4 1069 252 59 0 0 chr3 63538117 63538151 -96061632 + (TTTG)n Simple_repeat Simple_repeat 3 36 0 4 1069 1022 68 0 0 chr3 63538151 63538284 -96061499 - B1_Mm SINE Alu -11 136 4 4 1069 481 203 40 125 chr3 63538153 63538305 -96061478 - B4 SINE B4 -79 213 75 4 1069 216 86 0 0 chr3 63538362 63538397 -96061386 + (CAA)n Simple_repeat Simple_repeat 2 36 0 4 1069 256 184 48 84 chr3 63538464 63538547 -96061236 - MLT1N2 LTR MaLR -54 508 429 5 1069 485 340 83 86 chr3 63538563 63538772 -96061011 + MLT1F2 LTR MaLR 1 202 -358 5 1069 234 0 0 0 chr3 63538772 63538798 -96060985 + (TCTG)n Simple_repeat Simple_repeat 3 28 0 5 1069 485 340 83 86 chr3 63538798 63538835 -96060948 + MLT1F2 LTR MaLR 203 243 -317 5 1069 351 0 0 0 chr3 63538835 63538874 -96060909 + (CA)n Simple_repeat Simple_repeat 1 39 0 5 1069 485 333 152 84 chr3 63538874 63539154 -96060629 + MLT1F2 LTR MaLR 244 680 0 5 1069 907 267 24 5 chr3 63539719 63539930 -96059853 - ID_B1 SINE B4 -9 215 1 5 1069 279 104 0 0 chr3 63539973 63540021 -96059762 + (CA)n Simple_repeat Simple_repeat 1 48 0 5 1069 489 282 0 18 chr3 63540790 63540902 -96058881 - PB1D10 SINE Alu -7 110 1 5 1069 1118 240 65 10 chr3 63540990 63541280 -96058503 - Lx7 LINE L1 -584 7112 6807 5 1069 350 259 152 0 chr3 63541268 63541380 -96058403 + Lx7 LINE L1 7121 7249 -447 5 1069 216 0 0 0 chr3 63541537 63541561 -96058222 + (TG)n Simple_repeat Simple_repeat 2 25 0 5 1069 686 171 62 8 chr3 63541561 63541691 -96058092 - B1_Mur1 SINE Alu -11 138 2 5 1069 1232 264 35 57 chr3 63541775 63542141 -96057642 + Lx5 LINE L1 6670 7027 -23 6 1069 189 74 0 0 chr3 63542142 63542169 -96057614 + (TAA)n Simple_repeat Simple_repeat 3 29 0 6 1069 851 233 194 0 chr3 63542417 63542597 -96057186 + B3 SINE B2 1 215 -1 6 1069 390 91 0 0 chr3 63542726 63542781 -96057002 + (CA)n Simple_repeat Simple_repeat 2 56 0 6 1069 391 265 47 0 chr3 63542992 63543099 -96056684 - B1F2 SINE Alu -1 116 2 6 1069 440 197 32 0 chr3 63543359 63543451 -96056332 - B1_Mur1 SINE Alu -41 108 2 6 1069 312 70 0 0 chr3 63544984 63545027 -96054756 + (TG)n Simple_repeat Simple_repeat 1 43 0 6 1069 541 312 12 37 chr3 63545267 63545430 -96054353 + RSINE1 SINE B4 7 165 0 6 1069 458 276 97 55 chr3 63545891 63546056 -96053727 + MER20 DNA MER1_type 4 175 -44 6 1069 691 256 65 20 chr3 63546217 63546416 -96053367 - B3 SINE B2 -8 208 1 6 1069 3008 49 5 5 chr3 63546439 63546826 -96052957 - MTA_Mm LTR MaLR -9 387 1 7 1069 1097 230 10 0 chr3 63547866 63548070 -96051713 + B3 SINE B2 1 206 -10 7 1069 307 313 25 42 chr3 63548933 63549053 -96050730 + MLT2D LTR ERVL 223 340 -74 7 1069 277 188 157 14 chr3 63549051 63549121 -96050662 - PB1D9 SINE Alu -39 81 2 7 1069 22 35 0 0 chr3 63549351 63549380 -96050403 + AT_rich Low_complexity Low_complexity 1 29 0 7 1069 426 267 0 54 chr3 63551387 63551498 -96048285 + B1F SINE Alu 45 149 0 7 1069 1284 206 34 56 chr3 63551876 63552200 -96047583 + ORR1D1 LTR MaLR 26 342 -32 7 1069 272 241 29 194 chr3 63552700 63552737 -96047046 - B2_Mm2 SINE B2 0 195 164 7 1069 246 32 0 0 chr3 63552737 63552768 -96047015 + (TG)n Simple_repeat Simple_repeat 2 32 0 7 1069 669 277 7 0 chr3 63552768 63552905 -96046878 - B3 SINE B2 -29 187 50 7 1069 508 251 31 140 chr3 63553975 63554197 -96045586 + MTEa LTR MaLR 182 379 0 8 1069 3019 296 130 59 chr3 63554197 63554697 -96045086 + MTEa-int LTR MaLR 14 575 -1005 8 1069 225 279 29 14 chr3 63554697 63554766 -96045017 + ID4_ SINE ID 3 72 -11 8 1069 3019 296 130 59 chr3 63554766 63555650 -96044133 + MTEa-int LTR MaLR 576 1496 -84 8 1069 385 351 147 43 chr3 63555659 63555692 -96044091 + MTEb LTR MaLR 89 118 -261 8 1069 2288 222 50 33 chr3 63555692 63556266 -96043517 + RLTR31A_Mm LTR ERVK 1 584 0 8 1069 385 351 147 43 chr3 63556266 63556443 -96043340 + MTEb LTR MaLR 119 321 -58 8 1069 243 0 0 0 chr3 63556821 63556848 -96042935 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 8 1069 315 0 0 0 chr3 63558074 63558109 -96041674 + (T)n Simple_repeat Simple_repeat 1 35 0 8 1069 741 217 0 0 chr3 63558263 63558438 -96041345 + (CA)n Simple_repeat Simple_repeat 1 175 0 8 1069 306 203 101 0 chr3 63560058 63560127 -96039656 + ID4 SINE ID 6 81 -2 8 1069 23 0 0 0 chr3 63560142 63560165 -96039618 + AT_rich Low_complexity Low_complexity 1 23 0 8 1069 1424 98 16 0 chr3 63560221 63560405 -96039378 + B2_Mm2 SINE B2 1 187 -8 8 1069 248 306 71 0 chr3 63561264 63561349 -96038434 - B3A SINE B2 -107 91 1 9 1069 267 375 16 8 chr3 63561367 63561496 -96038287 - MIRc SINE MIR -118 150 21 9 1069 351 288 160 65 chr3 63562537 63562893 -96036890 - HAL1 LINE L1 -876 1631 1242 9 1069 322 338 85 36 chr3 63562888 63563112 -96036671 - HAL1 LINE L1 -1378 1129 895 9 1069 594 293 129 8 chr3 63563512 63563753 -96036030 - MLT1C LTR MaLR 0 467 198 9 1069 618 131 0 0 chr3 63564653 63564752 -96035031 + (CAGA)n Simple_repeat Simple_repeat 2 100 0 9 1069 339 317 111 43 chr3 63565195 63565429 -96034354 - MER31B LTR ERV1 -201 265 16 9 1069 473 351 124 45 chr3 63565451 63565943 -96033840 - MER21B LTR ERV1 -309 554 24 9 1069 396 0 0 0 chr3 63565946 63565990 -96033793 + (TAG)n Simple_repeat Simple_repeat 1 44 0 9 1069 1147 199 212 29 chr3 63566809 63567125 -96032658 + ORR1D1 LTR MaLR 1 374 0 9 1069 493 292 75 30 chr3 63568305 63568439 -96031344 + RSINE1 SINE B4 10 149 -16 9 1069 2063 179 27 75 chr3 63568631 63568963 -96030820 + MTC LTR MaLR 1 322 -99 1 1069 624 62 0 0 chr3 63568963 63569044 -96030739 + (ATGGTG)n Simple_repeat Simple_repeat 6 86 0 1 1069 2063 179 27 75 chr3 63569044 63569090 -96030693 + MTC LTR MaLR 323 365 -56 1 1069 2465 145 59 38 chr3 63569090 63569562 -96030221 + RLTR45 LTR ERVK 1 482 0 1 1069 2063 179 27 75 chr3 63569562 63569624 -96030159 + MTC LTR MaLR 366 421 0 1 1069 616 312 0 0 chr3 63569639 63569780 -96030003 - RSINE1 SINE B4 -19 146 6 1 133 562 268 80 17 chr3 63569807 63569982 -96029801 - B3A SINE B2 -12 186 1 1 1070 730 232 53 21 chr3 63569993 63570182 -96029601 - B3A SINE B2 -2 196 2 1 1070 600 27 0 0 chr3 63570337 63570411 -96029372 + (TG)n Simple_repeat Simple_repeat 1 74 0 1 1070 201 39 0 0 chr3 63570452 63570478 -96029305 + (TC)n Simple_repeat Simple_repeat 1 26 0 1 1070 23 92 0 0 chr3 63570799 63570864 -96028919 + AT_rich Low_complexity Low_complexity 1 65 0 1 1070 453 262 68 7 chr3 63571879 63572025 -96027758 + B3 SINE B2 62 216 0 1 1070 223 250 42 42 chr3 63572194 63572256 -96027527 + PB1D7 SINE Alu 48 111 -9 1 1070 504 0 0 0 chr3 63572256 63572312 -96027471 + (CAATA)n Simple_repeat Simple_repeat 3 58 0 1 1070 7979 64 3 2 chr3 63572431 63573548 -96026235 + L1_Mus1 LINE L1 5450 6567 0 1 1070 460 240 49 20 chr3 63574128 63574230 -96025553 + U6 snRNA snRNA 2 106 -1 1 1070 1258 61 0 6 chr3 63574433 63574597 -96025186 - B2_Mm2 SINE B2 -31 164 2 1 1070 716 182 71 0 chr3 63574636 63574762 -96025021 + B1_Mur1 SINE Alu 2 136 -13 1 1070 207 0 0 0 chr3 63574763 63574786 -96024997 + (TG)n Simple_repeat Simple_repeat 2 24 0 1 1070 7320 76 38 2 chr3 63574823 63576007 -96023776 - L1_Mus2 LINE L1 -1 6565 5353 1 1070 340 250 11 11 chr3 63576257 63576346 -96023437 + PB1D9 SINE Alu 20 108 -12 1 1070 528 16 0 0 chr3 63578158 63578219 -96021564 + (TG)n Simple_repeat Simple_repeat 1 61 0 1 1070 180 135 0 0 chr3 63578408 63578445 -96021338 + (A)n Simple_repeat Simple_repeat 1 37 0 1 1070 273 146 0 0 chr3 63578883 63578931 -96020852 + (GA)n Simple_repeat Simple_repeat 1 48 0 1 1070 778 208 83 34 chr3 63578993 63579197 -96020586 + B3 SINE B2 3 216 0 1 1070 192 125 0 0 chr3 63579444 63579476 -96020307 + (TGAA)n Simple_repeat Simple_repeat 1 32 0 1 1070 2899 76 22 47 chr3 63580091 63580494 -96019289 + L1_Mus2 LINE L1 6163 6555 -11 1 1070 1683 52 0 0 chr3 63580500 63580692 -96019091 + B2_Mm1t SINE B2 2 193 0 1 1070 611 84 0 10 chr3 63580710 63580806 -96018977 + (GGAA)n Simple_repeat Simple_repeat 3 97 0 1 1070 445 324 112 14 chr3 63581221 63581497 -96018286 - MER58B DNA MER1_type -8 333 31 1 1070 410 322 20 26 chr3 63582084 63582237 -96017546 + RSINE1 SINE B4 2 153 -12 1 1070 313 293 185 40 chr3 63582949 63583251 -96016532 + Charlie1 DNA MER1_type 2383 2728 -53 1 1070 298 200 0 18 chr3 63583404 63583460 -96016323 + MLT1L LTR MaLR 449 503 -107 1 1070 467 171 8 23 chr3 63583834 63583966 -96015817 + (TGG)n Simple_repeat Simple_repeat 3 132 0 1 1070 206 255 21 0 chr3 63584066 63584113 -96015670 - MIR3 SINE MIR -50 158 111 1 1070 1129 286 35 0 chr3 63584169 63584480 -96015303 + Lx8 LINE L1 7017 7338 -135 1 1070 324 70 0 0 chr3 63585144 63585187 -96014596 + (CA)n Simple_repeat Simple_repeat 1 43 0 1 1070 1148 111 0 6 chr3 63586370 63586551 -96013232 + (GGA)n Simple_repeat Simple_repeat 1 180 0 1 1070 1217 302 81 52 chr3 63586963 63587484 -96012299 + MLT2B3 LTR ERVL 19 554 0 1 1070 640 275 0 20 chr3 63588279 63588431 -96011352 - B1F SINE Alu 0 149 1 1 1070 466 337 5 83 chr3 63588431 63588522 -96011261 - ID SINE ID -147 77 4 1 1070 231 140 0 0 chr3 63589446 63589496 -96010287 + (A)n Simple_repeat Simple_repeat 1 50 0 1 1070 22 35 0 0 chr3 63590189 63590218 -96009565 + AT_rich Low_complexity Low_complexity 1 29 0 1 1070 326 341 28 28 chr3 63591359 63591501 -96008282 + MIR SINE MIR 109 250 -12 1 1070 255 274 40 14 chr3 63591534 63591608 -96008175 + MLT1A LTR MaLR 49 124 -250 1 1070 232 273 115 26 chr3 63591889 63592002 -96007781 + RMER15 LTR ERVL 299 421 -154 1 1070 263 266 31 0 chr3 63592034 63592098 -96007685 + RMER15 LTR ERVL 496 561 -14 1 1070 409 231 29 24 chr3 63592058 63592210 -96007573 + MLT1A LTR MaLR 243 444 -23 1 1070 21 0 0 0 chr3 63592589 63592610 -96007173 + AT_rich Low_complexity Low_complexity 1 21 0 1 1070 330 26 0 0 chr3 63592711 63592750 -96007033 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 1070 207 355 37 0 chr3 63593718 63593825 -96005958 - L3b LINE CR1 -202 280 170 1 1070 282 275 49 42 chr3 63594140 63594284 -96005499 + RLTR23 LTR ERV1 286 430 0 1 1070 762 273 34 97 chr3 63594345 63594513 -96005270 + B3A SINE B2 2 164 -34 1 1070 312 70 0 0 chr3 63594513 63594556 -96005227 + (CA)n Simple_repeat Simple_repeat 1 43 0 1 1070 518 273 34 97 chr3 63594556 63594594 -96005189 + B2_Mm2 SINE B2 159 195 0 1 1070 403 195 0 17 chr3 63594597 63594712 -96005071 + GA-rich Low_complexity Low_complexity 3 115 0 1 1070 420 111 0 0 chr3 63595399 63595462 -96004321 + (TAAG)n Simple_repeat Simple_repeat 4 66 0 1 1070 314 274 118 0 chr3 63595470 63595572 -96004211 + PB1D9 SINE Alu 1 114 -6 1 1070 954 291 73 22 chr3 63595588 63595957 -96003826 + Lx8 LINE L1 6939 7326 -147 1 1070 274 179 167 0 chr3 63595969 63596047 -96003736 + Lx8 LINE L1 7383 7473 0 1 1070 3412 261 119 58 chr3 63596318 63597604 -96002179 + Lx8 LINE L1 6105 7469 -4 1 1070 296 298 63 11 chr3 63597620 63597715 -96002068 + RSINE1 SINE B4 29 128 -37 1 1070 265 303 15 0 chr3 63597704 63597770 -96002013 - B1_Mur2 SINE Alu -45 104 38 1 1070 298 266 168 43 chr3 63597799 63597984 -96001799 - L1MB7 LINE L1 -126 6058 5851 1 1070 491 308 99 40 chr3 63598264 63598388 -96001395 + ID_B1 SINE B4 81 218 -74 1 1070 396 0 0 0 chr3 63598388 63598432 -96001351 + (CA)n Simple_repeat Simple_repeat 2 45 0 1 1070 217 308 99 40 chr3 63598432 63598459 -96001324 + B4A SINE B4 219 245 -47 1 1070 27 0 0 0 chr3 63598608 63598635 -96001148 + AT_rich Low_complexity Low_complexity 1 27 0 1 1070 255 212 0 22 chr3 63599243 63599312 -96000471 + MIR SINE MIR 51 118 -150 1 1070 191 288 33 121 chr3 63600379 63600470 -95999313 + MER5B DNA MER1_type 85 167 -11 1 1070 181 328 37 59 chr3 63600470 63600606 -95999177 - MIR SINE MIR -61 201 69 1 1070 1442 218 102 23 chr3 63600788 63601131 -95998652 + ORR1D2 LTR MaLR 1 370 0 1 1070 335 316 42 10 chr3 63601234 63601330 -95998453 + PB1D10 SINE Alu 2 100 -17 1 1070 334 257 28 73 chr3 63601565 63601674 -95998109 + B3 SINE B2 1 104 -112 1 1070 1488 183 80 63 chr3 63601673 63601829 -95997954 + ORR1C1 LTR MaLR 11 181 -197 1 1070 306 0 0 0 chr3 63601829 63601863 -95997920 + (TC)n Simple_repeat Simple_repeat 1 34 0 1 1070 1488 183 80 63 chr3 63601863 63602068 -95997715 + ORR1C1 LTR MaLR 182 378 0 1 1070 6202 176 30 20 chr3 63602068 63603290 -95996493 + ORR1C1-int LTR MaLR 1 1234 -275 1 1070 333 0 0 0 chr3 63604534 63604571 -95995212 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 1070 263 321 13 108 chr3 63604585 63604742 -95995041 + ORR1C1 LTR MaLR 1 142 -217 1 1070 304 233 239 24 chr3 63605393 63605560 -95994223 + B3 SINE B2 2 204 -12 1 1070 432 228 0 0 chr3 63605621 63605700 -95994083 + B4 SINE B4 3 81 -211 1 1070 281 241 19 0 chr3 63605891 63605945 -95993838 + ID4 SINE ID 5 59 -24 1 1070 243 61 0 0 chr3 63605955 63605988 -95993795 + (CA)n Simple_repeat Simple_repeat 2 34 0 1 1070 450 0 0 0 chr3 63605988 63606037 -95993746 + (GA)n Simple_repeat Simple_repeat 2 51 0 1 1070 2800 333 45 26 chr3 63606630 63606735 -95993048 + Lx8 LINE L1 6059 6170 -1303 1 1070 333 0 0 0 chr3 63606735 63606772 -95993011 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 1070 2800 333 45 26 chr3 63606772 63607899 -95991884 + Lx8 LINE L1 6171 7313 -160 1 1070 351 0 0 0 chr3 63607899 63607938 -95991845 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 1070 207 261 31 0 chr3 63607940 63608005 -95991778 + (TA)n Simple_repeat Simple_repeat 2 68 0 1 1070 229 367 83 21 chr3 63609899 63610091 -95989692 + RMER4B LTR ERVK 10 213 -372 1 1070 198 0 0 0 chr3 63610265 63610287 -95989496 + (TG)n Simple_repeat Simple_repeat 1 22 0 1 1070 270 333 114 0 chr3 63610364 63610487 -95989296 + ID_B1 SINE B4 81 217 -7 1 1070 431 191 11 33 chr3 63612065 63612157 -95987626 - PB1D10 SINE Alu 0 117 28 1 1070 486 259 2 11 chr3 63612823 63612941 -95986842 + PB1D10 SINE Alu 14 125 -22 1 1070 495 157 0 0 chr3 63612945 63613034 -95986749 + GA-rich Low_complexity Low_complexity 2 90 0 1 1070 24 53 0 0 chr3 63613167 63613205 -95986578 + AT_rich Low_complexity Low_complexity 1 38 0 1 1070 362 330 8 74 chr3 63613283 63613404 -95986379 - MTEa LTR MaLR -266 113 1 1 1070 494 220 20 10 chr3 63613802 63613896 -95985887 + B4 SINE B4 1 95 -197 1 1070 569 249 46 54 chr3 63613896 63613976 -95985807 + ID_B1 SINE B4 4 222 -1 1 1070 1057 80 0 0 chr3 63613976 63614114 -95985669 + B1_Mus1 SINE Alu 11 148 0 1 1070 557 284 63 25 chr3 63614127 63614286 -95985497 + B4 SINE B4 128 292 0 1 1070 555 240 58 0 chr3 63614328 63614482 -95985301 + L1MB7 LINE L1 5833 5995 -189 1 1070 31 0 0 0 chr3 63614740 63614771 -95985012 + AT_rich Low_complexity Low_complexity 1 31 0 1 1070 686 274 5 32 chr3 63614775 63614960 -95984823 + B3A SINE B2 3 182 -16 1 1070 713 146 6 0 chr3 63614960 63615125 -95984658 + (CA)n Simple_repeat Simple_repeat 1 166 0 1 1070 1503 228 169 24 chr3 63615894 63616400 -95983383 - RMER4B LTR ERVK -5 580 1 1 1070 829 222 62 29 chr3 63616457 63616666 -95983117 + B3 SINE B2 1 216 0 1 1070 295 337 10 10 chr3 63617115 63617217 -95982566 + ID_B1 SINE B4 78 179 -45 1 1070 524 204 29 10 chr3 63617133 63617237 -95982546 + PB1D9 SINE Alu 15 120 0 1 1070 3829 103 8 2 chr3 63617240 63617753 -95982030 + Lx2 LINE L1 6479 6994 -3 1 1070 271 242 161 0 chr3 63617796 63617920 -95981863 + Charlie10 DNA MER1_type 2672 2815 -7 1 1070 593 299 9 110 chr3 63618576 63618794 -95980989 + B3A SINE B2 1 196 -2 2 1070 22 0 0 0 chr3 63619695 63619717 -95980066 + AT_rich Low_complexity Low_complexity 1 22 0 2 1070 324 0 0 0 chr3 63622078 63622114 -95977669 + (CA)n Simple_repeat Simple_repeat 2 37 0 2 1070 650 279 94 26 chr3 63622496 63622864 -95976919 + MLT2B1 LTR ERVL 5 528 -34 2 1070 445 181 125 0 chr3 63623046 63623137 -95976646 + PB1D7 SINE Alu 10 110 -10 2 1070 232 122 0 169 chr3 63623094 63623153 -95976630 + ID_B1 SINE B4 175 223 -1 2 1070 1399 121 97 0 chr3 63623187 63623393 -95976390 - URR1A DNA MER1_type 0 226 1 2 1070 302 80 20 0 chr3 63624476 63624526 -95975257 + (TG)n Simple_repeat Simple_repeat 2 52 0 2 1070 300 315 22 0 chr3 63624528 63624617 -95975166 - B3 SINE B2 -51 165 75 2 1070 508 316 0 35 chr3 63624869 63625010 -95974773 + B1F2 SINE Alu 1 136 -13 2 1070 594 253 45 126 chr3 63625025 63625224 -95974559 + B3A SINE B2 3 185 -10 2 1070 270 333 0 11 chr3 63625308 63625396 -95974387 - MER74B LTR ERVL -418 204 118 2 1070 1881 163 8 93 chr3 63625389 63625767 -95974016 - ORR1B1 LTR MaLR -8 386 41 2 1070 195 45 0 83 chr3 63625791 63625839 -95973944 + (TAAAAA)n Simple_repeat Simple_repeat 4 47 0 2 1070 978 122 0 0 chr3 63626410 63626590 -95973193 + (TC)n Simple_repeat Simple_repeat 1 180 0 2 1070 368 284 98 0 chr3 63626677 63626779 -95973004 + MLT1F1 LTR MaLR 5 116 -453 2 1070 21 36 0 0 chr3 63627461 63627489 -95972294 + AT_rich Low_complexity Low_complexity 1 28 0 2 1070 185 363 65 21 chr3 63628134 63628227 -95971556 - L2b LINE L2 -9 3366 3270 2 1070 258 32 0 0 chr3 63628571 63628602 -95971181 + (TTTTG)n Simple_repeat Simple_repeat 4 34 0 2 1070 1031 255 5 0 chr3 63628635 63628847 -95970936 - ID_B1 SINE B4 -10 214 2 2 1070 3089 26 17 0 chr3 63629359 63629705 -95970078 + L1Md_F3 LINE L1 6230 6581 -3 2 1070 519 102 40 10 chr3 63630015 63630114 -95969669 - L1Md_F2 LINE L1 -2 6580 6479 2 1070 236 127 18 0 chr3 63630209 63630264 -95969519 + (ATG)n Simple_repeat Simple_repeat 3 58 0 2 1070 349 292 10 0 chr3 63630367 63630463 -95969320 + Lx9 LINE L1 6877 6973 -671 2 1070 3804 66 50 0 chr3 63630462 63631036 -95968747 + L1_Mus1 LINE L1 5319 5921 -646 2 1070 24 0 0 0 chr3 63631264 63631288 -95968495 + AT_rich Low_complexity Low_complexity 1 24 0 2 1070 186 43 0 0 chr3 63632110 63632133 -95967650 + (CAA)n Simple_repeat Simple_repeat 2 24 0 2 1070 267 173 0 0 chr3 63632131 63632183 -95967600 + A-rich Low_complexity Low_complexity 1 52 0 2 1070 214 200 0 68 chr3 63632793 63632852 -95966931 + (TG)n Simple_repeat Simple_repeat 1 55 0 2 1070 668 258 51 6 chr3 63632852 63632863 -95966920 - RSINE1 SINE B4 0 165 155 2 1070 441 0 0 0 chr3 63632863 63632912 -95966871 + (GA)n Simple_repeat Simple_repeat 1 49 0 2 1070 668 258 51 6 chr3 63632912 63633056 -95966727 - RSINE1 SINE B4 -11 154 3 2 1070 278 367 7 52 chr3 63633604 63633739 -95966044 + FAM SINE Alu 173 301 -10 2 1070 869 208 20 40 chr3 63634154 63634354 -95965429 + B3A SINE B2 1 196 -2 2 1070 418 314 146 11 chr3 63635601 63635881 -95963902 + L1MEc LINE L1 158 475 -5925 2 1070 359 280 89 10 chr3 63636111 63636212 -95963571 + ID_B1 SINE B4 113 221 -3 2 1070 470 131 119 0 chr3 63636247 63636331 -95963452 + B3A SINE B2 2 95 -103 2 1070 575 308 7 1 chr3 63637013 63637186 -95962597 + B3A SINE B2 1 172 -44 2 1070 289 54 0 0 chr3 63637667 63637704 -95962079 + L1_Mm LINE L1 4732 4768 -1115 2 1070 259 260 98 59 chr3 63638928 63638946 -95960837 - B2_Mm2 SINE B2 -86 109 4 2 1070 381 309 0 0 chr3 63638946 63639030 -95960753 - RSINE1 SINE B4 -77 88 5 2 1070 803 294 53 18 chr3 63640033 63640314 -95959469 + B4A SINE B4 2 292 0 2 1070 210 37 0 0 chr3 63640719 63640746 -95959037 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2 1070 944 75 22 8 chr3 63640748 63640882 -95958901 - L1Md_F2 LINE L1 -16 6566 6431 2 1070 24 0 0 0 chr3 63641207 63641231 -95958552 + AT_rich Low_complexity Low_complexity 1 24 0 2 1070 675 326 23 0 chr3 63641317 63641532 -95958251 - MER58A DNA MER1_type 0 224 5 2 1070 494 292 132 22 chr3 63641578 63641760 -95958023 + B3 SINE B2 2 203 -13 2 1070 875 226 250 31 chr3 63642097 63642385 -95957398 - ORR1D1 LTR MaLR 0 374 24 2 1070 218 179 26 0 chr3 63642385 63642424 -95957359 + G-rich Low_complexity Low_complexity 6 45 0 2 1070 1208 259 57 10 chr3 63642871 63643167 -95956616 + ORR1E LTR MaLR 45 354 -5 2 1070 989 138 7 20 chr3 63643456 63643604 -95956179 - B1_Mur4 SINE Alu 0 150 5 2 1070 295 293 110 17 chr3 63643916 63644034 -95955749 - L1M5 LINE L1 -539 5585 5457 2 1070 326 315 0 0 chr3 63644050 63644123 -95955660 - ID4 SINE ID -8 75 3 2 1070 519 95 0 0 chr3 63644819 63644893 -95954890 + (CA)n Simple_repeat Simple_repeat 2 75 0 2 1070 1125 229 76 86 chr3 63645004 63645387 -95954396 + ORR1C2 LTR MaLR 6 384 0 2 1070 273 57 0 0 chr3 63647272 63647307 -95952476 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 2 1070 738 222 7 40 chr3 63647307 63647450 -95952333 - B1_Mur3 SINE Alu -8 141 3 2 1070 207 246 0 0 chr3 63647470 63647489 -95952294 + A-rich Low_complexity Low_complexity 1 19 0 2 1070 1243 50 0 0 chr3 63647489 63647630 -95952153 + B1_Mm SINE Alu 2 142 -5 2 1070 207 246 0 0 chr3 63647630 63647675 -95952108 + A-rich Low_complexity Low_complexity 20 64 0 2 1070 307 336 31 44 chr3 63648201 63648360 -95951423 + MIR SINE MIR 27 183 -79 2 1070 23 0 0 0 chr3 63649205 63649228 -95950555 + AT_rich Low_complexity Low_complexity 1 23 0 2 1070 591 228 290 12 chr3 63649235 63649404 -95950379 + B3 SINE B2 1 216 0 2 1070 278 274 204 11 chr3 63649523 63649632 -95950151 + B1F SINE Alu 1 126 -21 2 1070 768 136 0 0 chr3 63649636 63649761 -95950022 + (GAA)n Simple_repeat Simple_repeat 1 125 0 2 1070 274 186 186 0 chr3 63650029 63650099 -95949684 + B4 SINE B4 2 84 -208 2 1070 555 298 15 0 chr3 63650644 63650775 -95949008 + ID_B1 SINE B4 84 216 -8 2 1070 675 215 11 6 chr3 63650828 63651006 -95948777 + GA-rich Low_complexity Low_complexity 2 180 0 2 1070 2415 189 7 14 chr3 63651136 63651559 -95948224 + MTC LTR MaLR 1 420 -1 2 1070 425 296 111 14 chr3 63651981 63652125 -95947658 + RSINE1 SINE B4 8 165 0 2 1070 198 0 0 0 chr3 63652662 63652684 -95947099 + (TC)n Simple_repeat Simple_repeat 1 22 0 2 1070 372 43 0 0 chr3 63652684 63652729 -95947054 + (CA)n Simple_repeat Simple_repeat 1 46 0 2 1070 774 258 0 0 chr3 63652745 63652896 -95946887 - RSINE1 SINE B4 -4 161 11 2 1070 264 236 14 0 chr3 63653074 63653146 -95946637 + (CATATA)n Simple_repeat Simple_repeat 6 78 0 2 1070 27 0 0 0 chr3 63653498 63653525 -95946258 + AT_rich Low_complexity Low_complexity 1 27 0 2 1070 342 45 0 0 chr3 63655800 63655844 -95943939 + (TA)n Simple_repeat Simple_repeat 2 45 0 2 1070 332 276 103 36 chr3 63656292 63656468 -95943315 + MIR SINE MIR 37 220 -42 2 1070 1235 62 0 0 chr3 63658112 63658258 -95941525 - B1_Mus1 SINE Alu 0 148 3 2 1070 702 200 7 56 chr3 63658579 63658722 -95941061 + B1_Mur1 SINE Alu 2 137 -12 2 1070 195 69 0 0 chr3 63658723 63658752 -95941031 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 2 1070 1344 150 67 35 chr3 63659044 63659216 -95940567 + RLTR20C LTR ERVK 272 442 -92 2 1070 797 38 9 0 chr3 63659216 63659321 -95940462 + (TG)n Simple_repeat Simple_repeat 1 106 0 2 1070 1344 150 67 35 chr3 63659321 63659403 -95940380 + RLTR20C LTR ERVK 443 534 0 2 1070 336 275 0 142 chr3 63660633 63660760 -95939023 + RSINE1 SINE B4 3 111 -54 2 1070 593 205 18 0 chr3 63660821 63660933 -95938850 + PB1D7 SINE Alu 7 120 0 2 1070 696 233 95 53 chr3 63661035 63661173 -95938610 + B3A SINE B2 1 153 -45 2 1070 351 0 0 0 chr3 63661173 63661212 -95938571 + (CA)n Simple_repeat Simple_repeat 2 40 0 2 1070 696 233 95 53 chr3 63661212 63661263 -95938520 + B3A SINE B2 154 198 0 2 1070 222 173 269 0 chr3 63661352 63661404 -95938379 + B3 SINE B2 52 117 -99 2 1070 206 269 13 13 chr3 63663321 63663400 -95936383 + T-rich Low_complexity Low_complexity 3 81 0 2 1070 443 310 35 81 chr3 63663928 63664100 -95935683 + RSINE1 SINE B4 2 165 0 2 1070 459 0 0 0 chr3 63664108 63664159 -95935624 + (TAA)n Simple_repeat Simple_repeat 3 53 0 2 1070 1162 226 19 0 chr3 63664159 63664367 -95935416 + B3 SINE B2 1 212 -4 2 1070 723 311 49 31 chr3 63664414 63664700 -95935083 + B4A SINE B4 2 292 0 2 1070 228 240 80 0 chr3 63664871 63664946 -95934837 + L1M2c LINE L1 1880 1960 -4829 2 1070 430 259 179 8 chr3 63665010 63665127 -95934656 + B1_Mur1 SINE Alu 12 148 -1 2 1070 1730 190 173 15 chr3 63665141 63665491 -95934292 + Lx9 LINE L1 7111 7515 -129 2 1070 267 31 0 0 chr3 63665491 63665523 -95934260 + (TG)n Simple_repeat Simple_repeat 1 32 0 2 1070 523 134 92 30 chr3 63665523 63665643 -95934140 + Lx9 LINE L1 7516 7644 0 2 1070 1100 114 0 0 chr3 63665666 63665806 -95933977 + B1_Mus1 SINE Alu 2 141 -7 2 1070 524 112 22 0 chr3 63665945 63666034 -95933749 + (GAAA)n Simple_repeat Simple_repeat 3 93 0 2 1070 228 284 90 45 chr3 63666035 63666168 -95933615 + MusHAL1 LINE L1 2282 2420 -292 2 1070 237 83 0 0 chr3 63666198 63666234 -95933549 + (CA)n Simple_repeat Simple_repeat 1 36 0 2 1070 201 133 0 0 chr3 63666424 63666454 -95933329 + (CAAA)n Simple_repeat Simple_repeat 1 30 0 2 1070 243 0 0 0 chr3 63666742 63666769 -95933014 + (A)n Simple_repeat Simple_repeat 1 27 0 3 1070 185 296 0 0 chr3 63667601 63667655 -95932128 + L4 LINE RTE 229 282 -1747 3 1070 539 289 177 24 chr3 63667784 63667993 -95931790 + B4A SINE B4 51 291 -1 3 1070 366 23 0 0 chr3 63669302 63669345 -95930438 + (A)n Simple_repeat Simple_repeat 1 43 0 3 1070 225 175 31 31 chr3 63670239 63670304 -95929479 - Lx7 LINE L1 -21 7675 7611 3 1070 935 284 71 26 chr3 63670342 63670682 -95929101 - Lx7 LINE L1 -318 7378 7024 3 1070 610 277 16 28 chr3 63670745 63670927 -95928856 + B3A SINE B2 19 198 0 3 1070 1134 239 146 20 chr3 63671085 63671435 -95928348 - MTD LTR MaLR -1 418 25 3 1070 226 204 0 36 chr3 63671507 63671563 -95928220 + L1ME4a LINE L1 6066 6119 -5 3 1070 191 277 0 41 chr3 63672682 63672731 -95927052 - MIRc SINE MIR -162 106 60 3 1070 1099 232 93 108 chr3 63673002 63673326 -95926457 + MTEa LTR MaLR 2 320 -59 3 1070 205 178 0 0 chr3 63675525 63675611 -95924172 + A-rich Low_complexity Low_complexity 1 86 0 3 1070 2689 168 43 57 chr3 63676406 63677103 -95922680 + Lx4B LINE L1 6305 7047 -11 3 1070 385 289 17 9 chr3 63677488 63677603 -95922180 + PB1D10 SINE Alu 1 116 -1 3 1070 1736 58 62 0 chr3 63677802 63678026 -95921757 - L1_Mus2 LINE L1 -1 6565 6328 3 1070 624 232 149 51 chr3 63678067 63678262 -95921521 - MTD LTR MaLR 0 419 206 3 1070 696 133 0 0 chr3 63678273 63678393 -95921390 + (GAA)n Simple_repeat Simple_repeat 3 122 0 3 1070 326 304 68 17 chr3 63678394 63678511 -95921272 - MTD LTR MaLR -243 176 54 3 1070 245 279 114 0 chr3 63678652 63678731 -95921052 + MLT1A0 LTR MaLR 3 90 -275 3 1070 654 199 142 6 chr3 63678741 63678903 -95920880 + RLTR28B LTR ERVL 1 184 -297 3 1070 262 292 66 22 chr3 63679073 63679164 -95920619 + RLTR28 LTR ERVL 417 511 -13 3 1070 537 273 87 19 chr3 63679198 63679413 -95920370 + MLT1A0 LTR MaLR 127 400 -8 3 1070 974 234 50 69 chr3 63679432 63679739 -95920044 + B4 SINE B4 6 290 -2 3 1070 273 346 29 19 chr3 63679893 63679936 -95919847 - B4 SINE B4 -98 194 91 3 1070 306 233 0 0 chr3 63679936 63679996 -95919787 - PB1D10 SINE Alu -52 65 6 3 1070 226 244 114 92 chr3 63680581 63680712 -95919071 + MLT1A0 LTR MaLR 459 592 -3 3 1070 684 161 15 30 chr3 63681204 63681338 -95918445 + RLTR15 LTR ERVK 6 137 -222 3 1070 549 218 18 55 chr3 63681352 63681517 -95918266 + RLTR15 LTR ERVK 197 355 -4 3 1070 241 280 0 0 chr3 63681553 63681603 -95918180 + (CGA)n Simple_repeat Simple_repeat 3 52 0 3 1070 21 82 0 0 chr3 63681603 63681652 -95918131 + AT_rich Low_complexity Low_complexity 1 49 0 3 1070 825 215 91 0 chr3 63681659 63681690 -95918093 - B3 SINE B2 0 216 183 3 1070 330 26 0 0 chr3 63681690 63681729 -95918054 + (TATG)n Simple_repeat Simple_repeat 4 42 0 3 1070 825 215 91 0 chr3 63681729 63681883 -95917900 - B3 SINE B2 -34 182 15 3 1070 468 0 0 0 chr3 63682557 63682609 -95917174 + (CAAAA)n Simple_repeat Simple_repeat 2 53 0 3 1070 242 312 0 24 chr3 63682848 63682930 -95916853 + GA-rich Low_complexity Low_complexity 3 82 0 3 1070 228 343 113 7 chr3 63683771 63683912 -95915871 + RSINE1 SINE B4 4 159 -6 3 1070 331 262 25 0 chr3 63683979 63684059 -95915724 - ID4 SINE ID 0 83 2 3 1070 256 269 18 44 chr3 63684384 63684497 -95915286 + L1ME4a LINE L1 5806 5915 -209 3 1070 309 311 201 3 chr3 63684533 63684836 -95914947 - L1M5 LINE L1 -2115 4031 3669 3 1070 6086 76 4 8 chr3 63685481 63686251 -95913532 + L1_Mus4 LINE L1 5868 6634 -2 3 1070 204 125 0 0 chr3 63687299 63687331 -95912452 + (CA)n Simple_repeat Simple_repeat 1 32 0 3 1070 274 309 75 0 chr3 63687441 63687535 -95912248 - Lx8 LINE L1 -237 7236 7136 3 1070 358 271 12 12 chr3 63687856 63687942 -95911841 - RSINE1 SINE B4 -79 86 1 3 1070 332 381 78 14 chr3 63688084 63688302 -95911481 - MIR SINE MIR -29 233 2 3 1070 750 236 100 50 chr3 63688689 63688948 -95910835 + B4A SINE B4 2 273 -19 3 1070 3882 157 43 19 chr3 63688948 63689622 -95910161 + RMER6C LTR ERVK 1 690 0 3 1070 223 325 82 104 chr3 63690448 63690495 -95909288 + B4 SINE B4 44 87 -205 3 1070 309 297 40 49 chr3 63690495 63690598 -95909185 + B1F2 SINE Alu 1 110 -17 3 1070 313 312 0 0 chr3 63691028 63691108 -95908675 + ID4_ SINE ID 3 82 -1 3 1070 352 302 147 37 chr3 63691161 63691350 -95908433 + L1MC LINE L1 5405 5607 -2275 3 1070 1920 156 130 13 chr3 63691350 63691727 -95908056 - MTC LTR MaLR 0 421 1 3 1070 352 302 147 37 chr3 63691727 63691891 -95907892 + L1MC LINE L1 5608 5796 -2086 3 1070 999 289 38 19 chr3 63691930 63692195 -95907588 + B4A SINE B4 1 270 -22 3 1070 414 0 0 0 chr3 63692196 63692242 -95907541 + (CA)n Simple_repeat Simple_repeat 2 47 0 3 1070 551 208 33 0 chr3 63692297 63692417 -95907366 + L1M3e LINE L1 45 168 -6862 3 1070 2234 148 6 14 chr3 63692417 63692774 -95907009 + ORR1B2 LTR MaLR 1 354 -13 3 1070 441 295 49 8 chr3 63692780 63692903 -95906880 + L1M3e LINE L1 162 289 -6741 3 1070 629 276 130 95 chr3 63693113 63693706 -95906077 + L1M3e LINE L1 1451 2231 -4876 3 1070 660 36 0 0 chr3 63693706 63693789 -95905994 + (TAGA)n Simple_repeat Simple_repeat 4 86 0 3 1070 309 305 81 105 chr3 63693789 63693968 -95905815 + L1M3e LINE L1 2232 2446 -4661 3 1070 660 221 28 14 chr3 63693968 63694110 -95905673 + B1_Mur1 SINE Alu 1 144 -5 3 1070 387 299 67 87 chr3 63694110 63694520 -95905263 + L1M3e LINE L1 2007 2782 -4325 3 1070 1825 146 82 37 chr3 63694549 63694904 -95904879 - ORR1C2 LTR MaLR -13 371 1 3 1070 441 244 0 0 chr3 63695185 63695267 -95904516 + ID4_ SINE ID 2 83 0 3 1070 264 59 0 0 chr3 63695267 63695301 -95904482 + (A)n Simple_repeat Simple_repeat 1 34 0 3 1070 297 315 27 36 chr3 63695329 63695441 -95904342 - PB1D10 SINE Alu -5 112 2 3 1070 566 292 79 39 chr3 63695477 63695680 -95904103 + B3 SINE B2 1 211 -5 3 1070 425 245 10 19 chr3 63695831 63695935 -95903848 + PB1D10 SINE Alu 1 103 -14 3 1070 531 160 0 0 chr3 63695938 63696032 -95903751 + (TA)n Simple_repeat Simple_repeat 1 94 0 3 1070 739 163 11 27 chr3 63696515 63696698 -95903085 + GA-rich Low_complexity Low_complexity 1 180 0 3 1070 226 211 0 0 chr3 63696699 63696737 -95903046 + polypurine Low_complexity Low_complexity 5 42 0 3 1070 186 43 0 0 chr3 63696838 63696861 -95902922 + (GA)n Simple_repeat Simple_repeat 2 24 0 3 1070 248 336 6 149 chr3 63696870 63697038 -95902745 + MT2B2 LTR ERVL 119 262 -322 3 1070 527 263 73 22 chr3 63696930 63697066 -95902717 + B1F1 SINE Alu 7 149 0 3 1070 393 319 53 0 chr3 63698012 63698125 -95901658 + ID_B1 SINE B4 87 205 -19 3 1070 190 338 61 24 chr3 63698951 63699033 -95900750 + MIRb SINE MIR 40 124 -144 3 1070 215 333 16 0 chr3 63700663 63700726 -95899057 + ID4 SINE ID 10 73 -10 3 1070 222 158 122 5 chr3 63700846 63700921 -95898862 + L2a LINE L2 3298 3426 0 3 133 330 152 41 96 chr3 63700956 63701029 -95898754 + ID4_ SINE ID 4 72 -11 3 1071 252 86 0 0 chr3 63701029 63701064 -95898719 + (CA)n Simple_repeat Simple_repeat 2 36 0 3 1071 189 0 0 0 chr3 63702521 63702542 -95897241 + (CAAA)n Simple_repeat Simple_repeat 4 24 0 3 1071 204 216 20 0 chr3 63703086 63703137 -95896646 + C-rich Low_complexity Low_complexity 5 56 0 3 1071 402 21 0 0 chr3 63704849 63704896 -95894887 + (TAGA)n Simple_repeat Simple_repeat 4 50 0 3 1071 2429 160 75 73 chr3 63705330 63705849 -95893934 + RMER15 LTR ERVL 1 520 -55 3 1071 1825 116 57 44 chr3 63706789 63707106 -95892677 + ORR1A4 LTR MaLR 1 321 -8 3 1071 1135 218 81 62 chr3 63707248 63707264 -95892519 - MT2B LTR ERVL -7 594 579 3 1071 315 71 0 0 chr3 63707264 63707306 -95892477 + (TCTG)n Simple_repeat Simple_repeat 4 45 0 3 1071 1135 218 81 62 chr3 63707306 63707612 -95892171 - MT2B LTR ERVL -23 578 266 3 1071 246 286 134 0 chr3 63707654 63707766 -95892017 - MT2B LTR ERVL -405 128 2 3 1071 392 253 58 0 chr3 63708259 63708346 -95891437 - RSINE1 SINE B4 -19 146 55 3 1071 227 309 55 31 chr3 63708353 63708480 -95891303 - B1_Mur1 SINE Alu -17 132 3 3 1071 185 24 22 67 chr3 63710477 63710522 -95889261 + (TTTTG)n Simple_repeat Simple_repeat 3 45 0 3 1071 275 49 444 25 chr3 63710739 63710820 -95888963 + B2_Mm2 SINE B2 67 181 -14 3 1071 357 43 0 0 chr3 63710828 63710875 -95888908 + (TTTA)n Simple_repeat Simple_repeat 3 49 0 3 1071 1119 101 6 12 chr3 63710875 63711035 -95888748 - B2_Mm1t SINE B2 -33 160 2 3 1071 215 31 31 0 chr3 63711050 63711082 -95888701 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 3 1071 648 238 71 48 chr3 63711100 63711268 -95888515 + B3 SINE B2 1 172 -44 3 1071 285 29 0 0 chr3 63711271 63711305 -95888478 + (CA)n Simple_repeat Simple_repeat 2 35 0 3 1071 634 136 19 19 chr3 63711339 63711444 -95888339 + B1_Mur1 SINE Alu 45 149 0 3 1071 711 0 0 0 chr3 63711724 63711803 -95887980 + (GAA)n Simple_repeat Simple_repeat 1 79 0 3 1071 225 0 0 0 chr3 63711807 63711832 -95887951 + (AGGGGG)n Simple_repeat Simple_repeat 1 25 0 3 1071 22 0 0 0 chr3 63712208 63712230 -95887553 + AT_rich Low_complexity Low_complexity 1 22 0 3 1071 937 168 179 26 chr3 63712288 63712483 -95887300 - URR1B DNA MER1_type 0 225 1 3 1071 307 363 33 0 chr3 63712524 63712615 -95887168 + PB1D10 SINE Alu 17 110 -7 3 1071 327 329 37 0 chr3 63713374 63713456 -95886327 + RSINE1 SINE B4 67 151 -14 3 1071 189 171 0 0 chr3 63713462 63713497 -95886286 + CT-rich Low_complexity Low_complexity 2 36 0 3 1071 660 218 15 0 chr3 63713755 63713888 -95885895 + ID_B1 SINE B4 83 217 -7 3 1071 702 151 42 8 chr3 63714110 63714230 -95885553 - B1_Mm SINE Alu 0 147 24 3 1071 653 233 109 38 chr3 63714967 63715150 -95884633 + B3A SINE B2 1 196 -2 3 1071 25 0 0 0 chr3 63715151 63715176 -95884607 + AT_rich Low_complexity Low_complexity 1 25 0 3 1071 3433 38 5 10 chr3 63715876 63716274 -95883509 - MTA_Mm LTR MaLR 0 396 1 3 1071 2105 153 9 6 chr3 63716545 63716893 -95882890 + ORR1D1 LTR MaLR 1 349 -25 3 1071 2794 128 45 53 chr3 63716901 63717373 -95882410 + RLTR19 LTR ERVK 31 498 -1 4 1071 249 152 0 214 chr3 63717456 63717540 -95882243 + 4.5SRNA scRNA scRNA 23 88 -6 4 1071 581 189 19 19 chr3 63717486 63717594 -95882189 + B1_Mur1 SINE Alu 42 149 0 4 1071 213 62 41 20 chr3 63717594 63717643 -95882140 + (CAAAA)n Simple_repeat Simple_repeat 1 50 0 4 1071 242 342 77 77 chr3 63717785 63717994 -95881789 - RMER4A LTR ERVK -370 215 7 4 1071 638 246 7 37 chr3 63718174 63718309 -95881474 - ID_B1 SINE B4 -8 216 86 4 1071 363 264 97 35 chr3 63718306 63718451 -95881332 - MLT1L LTR MaLR -40 570 417 4 1071 322 225 13 53 chr3 63718727 63718802 -95880981 + ID4_ SINE ID 2 73 -10 4 1071 1204 75 0 0 chr3 63718973 63719119 -95880664 - B1_Mus2 SINE Alu 0 147 2 4 1071 201 94 0 0 chr3 63719756 63719788 -95879995 + (A)n Simple_repeat Simple_repeat 1 32 0 4 1071 267 265 0 0 chr3 63719864 63719913 -95879870 + B1F1 SINE Alu 2 50 -99 4 1071 238 369 0 83 chr3 63719871 63720004 -95879779 + ID_B1 SINE B4 22 143 -81 4 1071 389 275 0 68 chr3 63719946 63720063 -95879720 + PB1D10 SINE Alu 5 113 -4 4 1071 804 263 66 9 chr3 63720090 63720301 -95879482 + B4A SINE B4 64 286 -6 4 1071 315 49 0 0 chr3 63720324 63720365 -95879418 + (CA)n Simple_repeat Simple_repeat 2 42 0 4 1071 842 238 118 10 chr3 63720712 63720907 -95878876 - B3 SINE B2 0 216 1 4 1071 4688 123 55 12 chr3 63721029 63721753 -95878030 - RMER6A LTR ERVK -1 755 1 4 1071 799 258 39 43 chr3 63721858 63722065 -95877718 + B3A SINE B2 1 206 -10 4 1071 306 305 21 84 chr3 63722116 63722259 -95877524 + B3A SINE B2 47 180 -18 4 1071 219 234 0 30 chr3 63723064 63723114 -95876669 + T-rich Low_complexity Low_complexity 15 64 0 4 1071 1022 133 0 0 chr3 63723114 63723264 -95876519 - B1_Mur4 SINE Alu 0 150 1 4 1071 219 234 0 30 chr3 63723264 63723279 -95876504 + T-rich Low_complexity Low_complexity 1 14 0 4 1071 890 251 19 0 chr3 63723290 63723497 -95876286 - B3 SINE B2 -4 212 2 4 1071 606 255 85 85 chr3 63723526 63723702 -95876081 - B3A SINE B2 -14 181 6 4 1071 821 234 12 36 chr3 63723729 63723930 -95875853 - B3A SINE B2 -11 184 1 4 1071 24 32 0 0 chr3 63724424 63724455 -95875328 + AT_rich Low_complexity Low_complexity 1 31 0 4 1071 280 211 28 112 chr3 63724455 63724562 -95875221 + MT2B LTR ERVL 172 269 -332 4 1071 588 177 0 0 chr3 63724467 63724563 -95875220 + B1_Mur1 SINE Alu 21 116 -33 4 1071 696 24 0 0 chr3 63724574 63724656 -95875127 + (GGAA)n Simple_repeat Simple_repeat 1 82 0 4 1071 824 124 7 0 chr3 63724673 63724810 -95874973 + (GA)n Simple_repeat Simple_repeat 1 138 0 4 1071 585 168 42 72 chr3 63724967 63725060 -95874723 + ORR1E LTR MaLR 85 141 -218 4 1071 854 177 0 7 chr3 63725060 63725208 -95874575 - B1_Mur2 SINE Alu -2 147 1 4 1071 653 248 47 48 chr3 63725208 63725427 -95874356 + ORR1E LTR MaLR 129 366 -4 4 1071 407 325 35 0 chr3 63725429 63725543 -95874240 + RSINE1 SINE B4 20 137 -28 4 1071 374 0 0 21 chr3 63725555 63725602 -95874181 + (CA)n Simple_repeat Simple_repeat 1 46 0 4 1071 1077 81 0 0 chr3 63725603 63725752 -95874031 + (GAAA)n Simple_repeat Simple_repeat 4 152 0 4 1071 367 218 0 33 chr3 63725780 63725794 -95873989 + ID_B1 SINE B4 132 218 -6 4 1071 569 79 0 0 chr3 63725794 63725870 -95873913 + B1_Mus2 SINE Alu 66 141 -6 4 1071 270 0 0 0 chr3 63725872 63725902 -95873881 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 4 1071 551 291 70 14 chr3 63725973 63726116 -95873667 + RSINE1 SINE B4 13 163 -2 4 1071 659 252 0 0 chr3 63726146 63726285 -95873498 - B1_Mur1 SINE Alu -9 140 2 4 1071 243 0 0 0 chr3 63726296 63726323 -95873460 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 4 1071 214 260 20 0 chr3 63726654 63726704 -95873079 + B1F2 SINE Alu 5 55 -94 4 1071 498 222 40 10 chr3 63727138 63727238 -95872545 + B1F2 SINE Alu 44 146 -3 4 1071 522 299 38 6 chr3 63727289 63727447 -95872336 - RSINE1 SINE B4 -1 164 2 4 1071 195 42 0 0 chr3 63727481 63727505 -95872278 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 4 1071 189 0 0 0 chr3 63727505 63727525 -95872258 + (TG)n Simple_repeat Simple_repeat 2 22 0 4 1071 472 302 31 0 chr3 63727526 63727655 -95872128 - RSINE1 SINE B4 -30 135 3 4 1071 599 189 97 40 chr3 63727728 63727876 -95871907 - B3 SINE B2 -3 213 66 4 1071 391 257 12 33 chr3 63728059 63728180 -95871603 - B3A SINE B2 -83 112 1 4 1071 232 253 0 102 chr3 63728487 63728575 -95871208 - PB1D9 SINE Alu -1 119 41 4 1071 247 316 52 21 chr3 63728743 63728840 -95870943 + L2a LINE L2 3095 3194 -232 4 1071 211 150 0 0 chr3 63729561 63729601 -95870182 + B3 SINE B2 1 40 -176 4 1071 247 236 33 33 chr3 63729612 63729704 -95870079 + B3A SINE B2 106 197 -1 4 1071 306 0 0 0 chr3 63730101 63730135 -95869648 + (TG)n Simple_repeat Simple_repeat 2 35 0 4 1071 330 252 252 0 chr3 63730138 63730253 -95869530 - RSINE1 SINE B4 -20 145 2 4 1071 255 61 0 0 chr3 63730298 63730331 -95869452 + (TG)n Simple_repeat Simple_repeat 1 33 0 4 1071 181 80 38 62 chr3 63730459 63730539 -95869244 + (TAA)n Simple_repeat Simple_repeat 3 80 0 4 1071 468 242 47 62 chr3 63730799 63730927 -95868856 - B1F SINE Alu 0 149 24 4 1071 182 37 0 36 chr3 63731484 63731512 -95868271 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 4 1071 1086 70 0 14 chr3 63731512 63731648 -95868135 - B1_Mm SINE Alu -10 137 2 4 1071 1107 63 14 7 chr3 63731977 63732121 -95867662 + B1_Mm SINE Alu 2 146 -1 4 1071 228 206 0 150 chr3 63732631 63732711 -95867072 + MT2B LTR ERVL 197 264 -337 4 1071 759 40 0 38 chr3 63732641 63732746 -95867037 + B1_Mm SINE Alu 47 147 0 4 1071 243 122 0 0 chr3 63732746 63732795 -95866988 + (A)n Simple_repeat Simple_repeat 1 49 0 4 1071 221 178 212 61 chr3 63732823 63732889 -95866894 + BC1_Mm scRNA scRNA 6 81 -71 4 1071 568 195 35 0 chr3 63733546 63733659 -95866124 - B1_Mus2 SINE Alu 0 147 31 4 1071 329 242 266 32 chr3 63733901 63734059 -95865724 + MER77 LTR ERVL 54 248 -359 4 1071 310 272 68 0 chr3 63734074 63734177 -95865606 + MER77 LTR ERVL 304 413 -194 4 1071 227 226 35 70 chr3 63734320 63734377 -95865406 + ID4 SINE ID 27 81 -2 4 1071 353 298 82 115 chr3 63735031 63735213 -95864570 - B3A SINE B2 -16 182 7 4 1071 4384 122 29 32 chr3 63735231 63735390 -95864393 - RLTR19B LTR ERVK 0 715 569 4 1071 1153 114 16 21 chr3 63735390 63735578 -95864205 - L1_Mus3 LINE L1 -7 6631 6445 4 1071 4384 122 29 32 chr3 63735578 63736135 -95863648 - RLTR19B LTR ERVK -147 568 1 4 1071 1082 191 127 46 chr3 63736170 63736477 -95863306 - IAPEY3_LTR LTR ERVK 0 332 1 4 1071 365 257 128 10 chr3 63736564 63736666 -95863117 + ID_B1 SINE B4 4 117 -107 4 1071 189 0 0 0 chr3 63736906 63736927 -95862856 + (CAG)n Simple_repeat Simple_repeat 2 22 0 4 1071 673 174 110 29 chr3 63736998 63737134 -95862649 + B1_Mm SINE Alu 1 147 0 4 1071 818 218 65 15 chr3 63737441 63737641 -95862142 - B3 SINE B2 -6 210 1 4 1071 5762 46 1 0 chr3 63738028 63738791 -95860992 - L1Md_F3 LINE L1 -1568 4315 3552 4 1071 9874 48 1 0 chr3 63738790 63740064 -95859719 + L1Md_F3 LINE L1 4312 5586 -297 4 1071 8533 24 3 2 chr3 63740064 63741060 -95858723 + L1Md_F3 LINE L1 5587 6583 -1 4 1071 990 204 19 23 chr3 63741126 63741342 -95858441 + B3 SINE B2 1 215 -1 4 1071 2304 190 19 27 chr3 63741638 63742125 -95857658 - RLTR16 LTR ERVK -22 483 1 4 1071 406 304 65 34 chr3 63742196 63742219 -95857564 + ID_B1 SINE B4 63 139 -85 4 1071 488 288 45 0 chr3 63742219 63742330 -95857453 + B1F SINE Alu 1 116 -33 4 1071 406 304 65 34 chr3 63742330 63742351 -95857432 + ID_B1 SINE B4 140 218 -6 4 1071 573 156 184 0 chr3 63742451 63742560 -95857223 - B1_Mus2 SINE Alu -10 137 9 4 1071 348 200 0 41 chr3 63742502 63742575 -95857208 - B4A SINE B4 -141 151 82 4 1071 235 265 42 42 chr3 63742612 63742683 -95857100 - ID_B1 SINE B4 -75 149 79 4 1071 3022 151 8 8 chr3 63742979 63743473 -95856310 + RLTR25A LTR ERVK 1 494 -609 4 1071 314 358 105 21 chr3 63743480 63743671 -95856112 - RMER13A LTR ERVK -66 794 588 4 1071 204 40 0 0 chr3 63743679 63743704 -95856079 + (CACCC)n Simple_repeat Simple_repeat 3 27 0 4 1071 796 295 78 51 chr3 63743705 63744076 -95855707 - RMER13A LTR ERVK -467 393 13 4 1071 1823 172 215 43 chr3 63744070 63744448 -95855335 + RLTR25B LTR ERVK 436 853 -175 4 1071 261 0 0 0 chr3 63744448 63744477 -95855306 + (CA)n Simple_repeat Simple_repeat 2 30 0 4 1071 777 22 0 0 chr3 63744480 63744571 -95855212 + (GA)n Simple_repeat Simple_repeat 2 92 0 4 1071 1823 171 243 33 chr3 63744571 63744729 -95855054 + RLTR25B LTR ERVK 854 1028 0 4 1071 828 266 102 48 chr3 63744873 63745223 -95854560 + MLT1B LTR MaLR 7 375 -15 4 1071 529 339 68 60 chr3 63745223 63745574 -95854209 + ORR1E LTR MaLR 1 354 -5 4 1071 264 189 57 0 chr3 63745679 63745732 -95854051 - PB1D9 SINE Alu -64 56 1 4 1071 568 229 110 0 chr3 63745836 63745954 -95853829 + B1_Mur4 SINE Alu 11 141 -9 4 1071 23 0 0 0 chr3 63746266 63746289 -95853494 + AT_rich Low_complexity Low_complexity 1 23 0 4 1071 764 250 77 0 chr3 63747401 63747597 -95852186 - ID_B1 SINE B4 -12 212 2 4 1071 387 275 27 39 chr3 63747745 63747865 -95851918 - PB1D10 SINE Alu -4 123 10 4 1071 522 162 28 19 chr3 63748023 63748130 -95851653 - B1_Mur1 SINE Alu 0 149 42 4 1071 255 238 12 0 chr3 63749236 63749316 -95850467 + (TA)n Simple_repeat Simple_repeat 2 82 0 4 1071 304 309 42 3 chr3 63749394 63749500 -95850283 + B1_Mus1 SINE Alu 1 117 0 4 1071 648 255 14 7 chr3 63750206 63750348 -95849435 - ID_B1 SINE B4 -1 223 81 4 1071 236 268 11 99 chr3 63750269 63750360 -95849423 - MT2B LTR ERVL -366 235 153 4 1071 326 336 1 96 chr3 63750777 63750911 -95848872 + B1F1 SINE Alu 1 124 -25 5 1071 563 307 87 12 chr3 63751181 63751435 -95848348 + B4A SINE B4 1 273 -19 5 1071 668 221 66 0 chr3 63751680 63751816 -95847967 + B1_Mur2 SINE Alu 3 147 -2 5 1071 493 188 152 0 chr3 63752432 63752544 -95847239 + B1_Mur2 SINE Alu 21 149 0 5 1071 483 18 0 0 chr3 63752607 63752663 -95847120 + (CCA)n Simple_repeat Simple_repeat 1 56 0 5 1071 651 225 48 27 chr3 63752669 63752815 -95846968 + B1_Mur2 SINE Alu 1 149 0 5 1071 22 35 0 0 chr3 63752958 63752987 -95846796 + AT_rich Low_complexity Low_complexity 1 29 0 5 1071 701 187 7 22 chr3 63753043 63753180 -95846603 + B1_Mur3 SINE Alu 15 149 0 5 1071 334 287 234 11 chr3 63753239 63753517 -95846266 + L1MC4 LINE L1 7219 7558 -484 5 1071 602 215 56 62 chr3 63753549 63753693 -95846090 - B1F SINE Alu -1 148 6 5 1071 1728 159 78 17 chr3 63753873 63754219 -95845564 + ORR1B2 LTR MaLR 1 367 0 5 1071 322 187 114 51 chr3 63754283 63754362 -95845421 - ID_B1 SINE B4 -2 222 139 5 1071 396 0 0 0 chr3 63754489 63754533 -95845250 + (CA)n Simple_repeat Simple_repeat 1 44 0 5 1071 595 299 34 6 chr3 63754538 63754713 -95845070 + B3A SINE B2 1 180 -18 5 1071 748 291 18 39 chr3 63754758 63755041 -95844742 - Lx9 LINE L1 -791 6853 6577 5 1071 234 228 307 0 chr3 63755066 63755180 -95844603 - B1_Mur1 SINE Alu 0 149 1 5 1071 409 251 123 0 chr3 63755293 63755456 -95844327 - L1M5 LINE L1 -633 5540 5358 5 1071 408 20 0 0 chr3 63755521 63755570 -95844213 + (CA)n Simple_repeat Simple_repeat 2 50 0 5 1071 254 250 0 30 chr3 63755576 63755642 -95844141 + CT-rich Low_complexity Low_complexity 1 64 0 5 1071 603 188 14 36 chr3 63755648 63755786 -95843997 + RMER1C Other Other 1205 1339 -3 5 1071 256 301 115 14 chr3 63755799 63756008 -95843775 + L1M5 LINE L1 5615 5844 -329 5 1071 761 214 106 11 chr3 63756088 63756277 -95843506 + B3 SINE B2 4 210 -6 5 1071 598 146 106 0 chr3 63756346 63756476 -95843307 + B1_Mur2 SINE Alu 8 149 0 5 1071 361 230 21 103 chr3 63756780 63756877 -95842906 + B1_Mur1 SINE Alu 59 147 -2 5 1071 717 174 32 83 chr3 63757147 63757304 -95842479 - B1_Mur4 SINE Alu -1 149 1 5 1071 615 217 108 0 chr3 63758310 63758439 -95841344 + B1F1 SINE Alu 1 143 -6 5 1071 434 285 146 0 chr3 63758446 63758569 -95841214 + ID_B1 SINE B4 81 221 -3 5 1071 354 264 132 31 chr3 63758630 63758759 -95841024 - RSINE1 SINE B4 -4 161 20 5 1071 270 220 208 92 chr3 63759128 63759248 -95840535 + B3A SINE B2 64 197 -1 5 1071 767 184 20 7 chr3 63760036 63760184 -95839599 + B1_Mur4 SINE Alu 1 150 0 5 1071 201 39 0 0 chr3 63760205 63760231 -95839552 + (TC)n Simple_repeat Simple_repeat 2 27 0 5 1071 654 228 21 56 chr3 63760558 63760702 -95839081 + B1_Mur1 SINE Alu 4 142 -7 5 1071 259 248 35 122 chr3 63760831 63760946 -95838837 + B4A SINE B4 71 175 -117 5 1071 402 290 28 9 chr3 63760861 63760969 -95838814 + PB1D10 SINE Alu 8 117 0 5 1071 624 294 24 30 chr3 63761172 63761337 -95838446 + RSINE1 SINE B4 2 165 0 5 1071 439 301 35 57 chr3 63761510 63761651 -95838132 + B1F1 SINE Alu 1 138 -11 5 1071 246 174 0 0 chr3 63761671 63761717 -95838066 + GA-rich Low_complexity Low_complexity 3 48 0 5 1071 227 272 25 50 chr3 63761814 63761934 -95837849 + L1MD2 LINE L1 6116 6232 -127 5 1071 416 317 91 28 chr3 63761938 63762081 -95837702 - RSINE1 SINE B4 -12 153 2 5 1071 303 278 70 16 chr3 63762098 63762204 -95837579 + L1MC4a LINE L1 7747 7860 -22 5 1071 315 0 0 0 chr3 63762204 63762239 -95837544 + (TC)n Simple_repeat Simple_repeat 1 35 0 5 1071 294 29 0 0 chr3 63762239 63762273 -95837510 + (CA)n Simple_repeat Simple_repeat 1 35 0 5 1071 303 278 70 16 chr3 63762273 63762293 -95837490 + L1MC4a LINE L1 7861 7879 -3 5 1071 464 223 126 0 chr3 63762329 63762432 -95837351 + B1_Mur4 SINE Alu 14 129 -21 5 1071 21 36 0 0 chr3 63762480 63762508 -95837275 + AT_rich Low_complexity Low_complexity 1 28 0 5 1071 300 280 84 0 chr3 63763391 63763498 -95836285 - B3 SINE B2 -5 211 96 5 1071 463 294 20 46 chr3 63763592 63763788 -95835995 - B3A SINE B2 -6 192 2 5 1071 1191 41 14 0 chr3 63763885 63764030 -95835753 + B1_Mm SINE Alu 1 147 0 5 1071 311 240 39 20 chr3 63764174 63764276 -95835507 - RSINE1 SINE B4 -56 109 6 5 1071 385 107 0 51 chr3 63764927 63765006 -95834777 + CT-rich Low_complexity Low_complexity 4 78 0 5 1071 1081 78 0 0 chr3 63765006 63765148 -95834635 - B1_Mus1 SINE Alu -5 143 2 5 1071 843 257 14 5 chr3 63765507 63765714 -95834069 - B3 SINE B2 -6 210 2 5 1071 23 33 0 0 chr3 63766317 63766347 -95833436 + AT_rich Low_complexity Low_complexity 1 30 0 5 1071 328 258 77 22 chr3 63766859 63766878 -95832905 + ID_B1 SINE B4 65 113 -179 5 1071 334 196 0 0 chr3 63766878 63766934 -95832849 + B1F1 SINE Alu 1 56 -93 5 1071 328 258 77 22 chr3 63766934 63766950 -95832833 + ID_B1 SINE B4 114 161 -131 5 1071 288 0 0 0 chr3 63769536 63769568 -95830215 + (TTA)n Simple_repeat Simple_repeat 2 33 0 5 1071 486 233 12 2 chr3 63769597 63769711 -95830072 - B1F SINE Alu -32 117 3 5 1071 351 224 48 0 chr3 63769780 63769875 -95829908 + B1_Mur1 SINE Alu 1 142 -7 5 1071 671 248 14 0 chr3 63769923 63770064 -95829719 - B1_Mur1 SINE Alu -1 148 6 5 1071 435 83 0 0 chr3 63770077 63770137 -95829646 + (T)n Simple_repeat Simple_repeat 1 60 0 5 1071 433 350 0 14 chr3 63770137 63770279 -95829504 - ID_B1 SINE B4 0 224 85 5 1071 1056 168 21 122 chr3 63770366 63770603 -95829180 + ORR1C1 LTR MaLR 1 213 -165 5 1071 243 217 0 0 chr3 63770963 63771009 -95828774 - PB1 SINE Alu -1 126 81 5 1071 2631 232 96 13 chr3 63771059 63771758 -95828025 - Lx8 LINE L1 -5 7468 6710 5 1071 583 54 0 31 chr3 63771758 63771854 -95827929 - L1Md_F3 LINE L1 0 6584 6492 5 1071 2631 232 96 13 chr3 63771854 63771926 -95827857 - Lx8 LINE L1 -764 6709 6633 5 1071 287 169 152 15 chr3 63771987 63772053 -95827730 - B1F SINE Alu -1 148 74 5 1071 349 172 46 15 chr3 63772121 63772186 -95827597 + RLTR30 LTR ERV1 2 68 -311 5 1071 557 212 108 14 chr3 63772246 63772385 -95827398 - MLT1A0 LTR MaLR -202 163 12 5 1071 491 147 179 8 chr3 63772400 63772517 -95827266 - MLT1A0-int LTR MaLR -20 1715 1579 5 1071 1105 258 72 43 chr3 63772519 63772867 -95826916 + MTE2b LTR MaLR 6 363 -16 5 1071 269 320 68 38 chr3 63772888 63773021 -95826762 - MLT1A0-int LTR MaLR -147 1588 1452 5 1071 255 173 0 37 chr3 63773016 63773070 -95826713 + B1F SINE Alu 90 141 -8 5 1071 489 318 85 104 chr3 63773076 63773205 -95826578 - MLT1A0-int LTR MaLR -239 1496 1356 5 1071 1607 174 57 85 chr3 63773205 63773308 -95826475 - ORR1C1 LTR MaLR 0 378 285 5 1071 1086 86 0 0 chr3 63773308 63773447 -95826336 + B1_Mus1 SINE Alu 1 139 -9 5 1071 333 19 0 53 chr3 63773447 63773504 -95826279 + (CAAAA)n Simple_repeat Simple_repeat 2 55 0 5 1071 1607 174 57 85 chr3 63773504 63773623 -95826160 - ORR1C1 LTR MaLR -94 284 182 5 1071 822 103 0 0 chr3 63773623 63773768 -95826015 + (GA)n Simple_repeat Simple_repeat 2 146 0 5 1071 1607 174 57 85 chr3 63773768 63773932 -95825851 - ORR1C1 LTR MaLR -197 181 3 5 1071 489 318 85 104 chr3 63773932 63774072 -95825711 - MLT1A0-int LTR MaLR -380 1355 1232 5 1071 550 246 36 51 chr3 63774058 63774195 -95825588 - ID_B1 SINE B4 -27 197 63 5 1071 431 309 128 19 chr3 63774193 63774404 -95825379 - MLT1A0-int LTR MaLR -1333 402 169 5 1071 423 261 188 0 chr3 63774418 63774583 -95825200 - B3A SINE B2 0 198 3 5 1071 2544 67 0 55 chr3 63775283 63775629 -95824154 + ORR1A2 LTR MaLR 1 327 0 5 1071 467 314 0 8 chr3 63775635 63775754 -95824029 - B1F2 SINE Alu -10 139 22 5 1071 353 245 65 9 chr3 63775857 63775964 -95823819 - PB1D7 SINE Alu -3 117 5 5 1071 1252 167 92 78 chr3 63776690 63777113 -95822670 - L1_Rod LINE L1 -524 5323 4895 5 1071 489 50 0 0 chr3 63777155 63777215 -95822568 - L1_Mus1 LINE L1 -130 6437 6378 5 1071 462 71 0 0 chr3 63777216 63777286 -95822497 + L1Md_F2 LINE L1 6508 6577 -5 5 1071 616 157 10 10 chr3 63777444 63777547 -95822236 - B1_Mur4 SINE Alu -2 148 46 5 1071 531 254 0 8 chr3 63777557 63777684 -95822099 - L1_Rod LINE L1 -1126 4721 4596 5 1071 235 335 156 85 chr3 63777867 63778079 -95821704 + MLT1G1 LTR MaLR 204 430 -165 5 1071 245 342 25 50 chr3 63778091 63778171 -95821612 + MLT1G1 LTR MaLR 417 494 -85 5 1071 301 299 214 31 chr3 63778241 63778400 -95821383 - L1MC4 LINE L1 -490 7552 7365 5 1071 264 250 24 59 chr3 63778463 63778548 -95821235 + PB1D10 SINE Alu 35 116 -1 5 1071 359 273 117 10 chr3 63778555 63778751 -95821032 - L1MC4 LINE L1 -713 7329 7113 5 1071 375 157 48 40 chr3 63779015 63779141 -95820642 + CT-rich Low_complexity Low_complexity 4 130 0 5 1071 346 78 0 1 chr3 63779155 63779208 -95820575 - B1_Mur4 SINE Alu 0 150 69 5 1071 192 40 0 0 chr3 63779208 63779233 -95820550 + (GA)n Simple_repeat Simple_repeat 2 26 0 5 1071 1273 20 0 0 chr3 63779292 63779439 -95820344 + B1_Mm SINE Alu 1 147 0 5 1071 291 174 40 68 chr3 63779462 63779536 -95820247 - B1_Mus2 SINE Alu -69 78 7 5 1071 220 222 19 0 chr3 63779542 63779596 -95820187 + (CAAA)n Simple_repeat Simple_repeat 4 58 0 5 1071 475 210 50 0 chr3 63779651 63779759 -95820024 + B1_Mur4 SINE Alu 4 118 -2 5 1071 1162 61 0 0 chr3 63781410 63781558 -95818225 - B1_Mus1 SINE Alu 0 148 1 5 1071 489 280 38 8 chr3 63781650 63781783 -95818000 + B3 SINE B2 80 216 0 5 1071 318 50 0 0 chr3 63781908 63781948 -95817835 + (CA)n Simple_repeat Simple_repeat 1 40 0 5 1071 921 200 5 39 chr3 63781950 63782153 -95817630 - B3 SINE B2 -19 197 2 5 1071 378 289 31 63 chr3 63782222 63782381 -95817402 + MTD LTR MaLR 41 194 -225 5 1071 430 309 104 50 chr3 63782889 63783272 -95816511 - MTC LTR MaLR 0 419 13 5 1071 530 262 67 37 chr3 63783873 63784008 -95815775 - RSINE1 SINE B4 -25 140 2 5 1071 975 193 201 76 chr3 63784867 63785260 -95814523 - RMER10A LTR ERVL 0 442 1 5 1071 611 310 13 6 chr3 63785308 63785467 -95814316 - RSINE1 SINE B4 0 165 6 6 1071 298 311 126 63 chr3 63785512 63785639 -95814144 - B1F1 SINE Alu -13 136 2 6 1071 293 185 15 0 chr3 63785658 63785723 -95814060 + CT-rich Low_complexity Low_complexity 1 66 0 6 1071 183 42 0 0 chr3 63785721 63785745 -95814038 + (TCCTG)n Simple_repeat Simple_repeat 2 25 0 6 1071 507 69 58 0 chr3 63785746 63785833 -95813950 + (TTCC)n Simple_repeat Simple_repeat 1 92 0 6 1071 448 234 37 18 chr3 63785833 63785942 -95813841 - ID_B1 SINE B4 0 224 114 6 1071 242 342 0 27 chr3 63786158 63786269 -95813514 + RMER12 LTR ERVK 748 855 -467 6 1071 453 66 0 0 chr3 63786650 63786711 -95813072 + (TCCA)n Simple_repeat Simple_repeat 4 64 0 6 1071 585 197 61 9 chr3 63786711 63786854 -95812929 - B1_Mur1 SINE Alu -2 147 1 6 1071 901 272 100 14 chr3 63787406 63787448 -95812335 - MT2B LTR ERVL -2 599 551 6 1071 255 103 0 0 chr3 63787448 63787487 -95812296 + (TCTA)n Simple_repeat Simple_repeat 3 41 0 6 1071 901 243 136 115 chr3 63787487 63787881 -95811902 - MT2B LTR ERVL -51 550 16 6 1071 420 230 5 43 chr3 63787924 63788110 -95811673 + (TA)n Simple_repeat Simple_repeat 2 180 0 6 1071 917 167 0 6 chr3 63788299 63788474 -95811309 + CT-rich Low_complexity Low_complexity 3 176 0 6 1071 657 149 165 0 chr3 63788480 63788601 -95811182 - B1_Mur4 SINE Alu -5 145 5 6 1071 27 0 0 0 chr3 63788616 63788643 -95811140 + AT_rich Low_complexity Low_complexity 1 27 0 6 1071 596 211 0 136 chr3 63788658 63788812 -95810971 - B1_Mur3 SINE Alu -13 136 4 6 1071 247 25 0 48 chr3 63788978 63789020 -95810763 + (TTTTTG)n Simple_repeat Simple_repeat 2 41 0 6 1071 577 214 7 33 chr3 63789100 63789250 -95810533 - B1_Mur2 SINE Alu -2 147 2 6 1071 24 32 0 0 chr3 63789620 63789651 -95810132 + AT_rich Low_complexity Low_complexity 1 31 0 6 1071 246 32 0 0 chr3 63789676 63789707 -95810076 + (TG)n Simple_repeat Simple_repeat 2 32 0 6 1071 214 293 0 0 chr3 63789707 63789748 -95810035 - RSINE1 SINE B4 -41 124 84 6 1071 414 247 10 51 chr3 63789843 63789941 -95809842 - RSINE1 SINE B4 -8 157 64 6 1071 25 0 0 0 chr3 63790089 63790114 -95809669 + AT_rich Low_complexity Low_complexity 1 25 0 6 1071 189 0 0 0 chr3 63790193 63790214 -95809569 + (TG)n Simple_repeat Simple_repeat 2 22 0 6 1071 384 233 58 0 chr3 63790223 63790309 -95809474 - B3A SINE B2 -105 93 3 6 1071 258 129 34 34 chr3 63790552 63790640 -95809143 + (TG)n Simple_repeat Simple_repeat 1 88 0 6 1071 541 332 112 83 chr3 63790655 63790931 -95808852 - B4A SINE B4 -8 284 1 6 1071 2136 176 60 15 chr3 63791111 63791514 -95808269 - MTC LTR MaLR 0 421 1 6 1071 295 266 184 0 chr3 63791803 63791912 -95807871 - RSINE1 SINE B4 -31 134 6 6 1071 23 33 0 0 chr3 63792004 63792034 -95807749 + AT_rich Low_complexity Low_complexity 1 30 0 6 1071 321 343 38 0 chr3 63792056 63792161 -95807622 - B3A SINE B2 -22 176 68 6 1071 736 298 151 68 chr3 63792165 63792727 -95807056 - L2 LINE L2 -705 2714 2106 6 1071 2548 174 117 10 chr3 63793079 63793590 -95806193 - RMER15 LTR ERVL -5 570 5 6 1071 386 344 9 9 chr3 63794952 63795061 -95804722 + PB1 SINE Alu 12 112 -37 6 1071 801 292 26 10 chr3 63795064 63795258 -95804525 + B4A SINE B4 11 207 -85 6 1071 270 136 0 0 chr3 63795827 63795871 -95803912 + (TA)n Simple_repeat Simple_repeat 2 45 0 6 1071 242 324 15 0 chr3 63795900 63795968 -95803815 + Arthur1 DNA Tip100 235 303 -3644 6 1071 255 279 113 0 chr3 63796576 63796672 -95803111 - ID4 SINE ID -34 118 13 6 1071 186 43 0 0 chr3 63797381 63797404 -95802379 + (TG)n Simple_repeat Simple_repeat 2 24 0 6 1071 385 215 26 150 chr3 63797986 63798139 -95801644 - L1MB7 LINE L1 -96 6088 5953 6 1071 597 168 24 63 chr3 63798156 63798283 -95801500 - B1_Mur3 SINE Alu -7 142 21 6 1071 291 250 135 0 chr3 63798197 63798293 -95801490 - B4 SINE B4 -94 198 90 6 1071 422 206 188 0 chr3 63798502 63798662 -95801121 - L1MB7 LINE L1 -318 5866 5677 6 1071 524 291 183 59 chr3 63799013 63799553 -95800230 - L1MB2 LINE L1 -114 6057 5451 6 1071 479 167 102 0 chr3 63799694 63799802 -95799981 - L1MB2 LINE L1 -740 5440 5322 6 1071 611 229 24 8 chr3 63799833 63799956 -95799827 + B3 SINE B2 1 125 -91 6 1071 438 69 0 0 chr3 63799984 63800042 -95799741 + (TA)n Simple_repeat Simple_repeat 2 59 0 6 1071 514 274 29 22 chr3 63800118 63800256 -95799527 - B1_Mur3 SINE Alu -10 139 1 6 1071 648 200 131 40 chr3 63800365 63800563 -95799220 - B3 SINE B2 0 216 1 6 1071 445 81 12 86 chr3 63801287 63801368 -95798415 + B1_Mus2 SINE Alu 58 132 -18 6 1071 404 234 53 0 chr3 63801543 63801637 -95798146 - B3 SINE B2 -6 210 112 6 1071 206 214 24 0 chr3 63801697 63801739 -95798044 + (CTTG)n Simple_repeat Simple_repeat 2 44 0 6 1071 1566 53 0 0 chr3 63801779 63801969 -95797814 + B2_Mm1t SINE B2 1 190 -3 6 1071 22 0 0 0 chr3 63802005 63802027 -95797756 + AT_rich Low_complexity Low_complexity 1 22 0 6 1071 314 259 24 12 chr3 63802324 63802406 -95797377 + ID4 SINE ID 18 100 -52 6 1071 1176 54 7 0 chr3 63803400 63803547 -95796236 - B1_Mus1 SINE Alu 0 148 1 6 1071 1098 211 154 7 chr3 63803947 63804233 -95795550 + Lx6 LINE L1 7107 7434 -26 6 1071 22 0 0 0 chr3 63804445 63804467 -95795316 + AT_rich Low_complexity Low_complexity 1 22 0 6 1071 191 209 47 0 chr3 63804853 63804896 -95794887 - MER5A DNA MER1_type -71 118 74 6 1071 26 0 0 0 chr3 63805280 63805306 -95794477 + AT_rich Low_complexity Low_complexity 1 26 0 6 1071 180 0 0 0 chr3 63805599 63805619 -95794164 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 6 1071 280 330 88 0 chr3 63805930 63806021 -95793762 - RMER30 DNA MER1_type -5 197 99 6 1071 270 250 82 91 chr3 63805944 63806054 -95793729 + Charlie12 DNA MER1_type 19 127 -2746 6 1071 375 78 0 0 chr3 63806069 63806120 -95793663 + (TCTA)n Simple_repeat Simple_repeat 1 51 0 6 1071 797 119 0 0 chr3 63806128 63806246 -95793537 - B2_Mm2 SINE B2 -76 119 2 6 1071 243 79 0 0 chr3 63806313 63806351 -95793432 + (TG)n Simple_repeat Simple_repeat 2 39 0 6 1071 720 183 20 27 chr3 63806685 63806831 -95792952 - B1_Mus1 SINE Alu -3 145 1 6 1071 2624 51 6 0 chr3 63806859 63807190 -95792593 + L1Md_F2 LINE L1 6250 6582 0 6 1071 248 145 31 31 chr3 63807336 63807400 -95792383 - B3 SINE B2 0 216 153 6 1071 392 19 39 0 chr3 63807411 63807463 -95792320 + (TTTC)n Simple_repeat Simple_repeat 3 56 0 6 1071 36133 54 4 3 chr3 63807486 63813174 -95786609 - L1Md_F2 LINE L1 -1 6584 794 6 1071 1867 180 3 0 chr3 63813174 63813502 -95786281 - L1Md_F2 LINE L1 -5987 632 304 6 1071 1034 74 95 0 chr3 63813513 63813661 -95786122 - L1_Mus1 LINE L1 -10 6557 6396 6 1071 1093 44 0 0 chr3 63813663 63813800 -95785983 - L1_Mm LINE L1 -3958 1925 1789 6 1071 392 167 30 0 chr3 63813810 63813876 -95785907 - B3A SINE B2 -128 70 3 6 1071 305 308 9 61 chr3 63814015 63814129 -95785654 - HAL1-3A_ME LINE L1 -775 2083 1976 6 1071 460 234 86 28 chr3 63814154 63814290 -95785493 + B3A SINE B2 3 145 -48 6 1071 735 269 67 41 chr3 63814756 63815070 -95784713 - L1MA6 LINE L1 -249 6051 5730 6 1071 1366 77 0 35 chr3 63815806 63816008 -95783775 - B2_Mm2 SINE B2 0 195 1 6 1071 567 320 0 0 chr3 63816102 63816252 -95783531 + RSINE1 SINE B4 2 151 -14 6 1071 1601 246 48 2 chr3 63816275 63816674 -95783109 + MTC LTR MaLR 3 419 -2 6 1071 240 35 0 0 chr3 63816734 63816763 -95783020 + (TGG)n Simple_repeat Simple_repeat 1 29 0 6 1071 1336 79 0 6 chr3 63817023 63817201 -95782582 + B2_Mm2 SINE B2 1 177 -18 6 1071 221 0 0 33 chr3 63817944 63817974 -95781809 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 6 1071 1280 295 72 27 chr3 63818467 63818955 -95780828 - MER82 DNA MER2_type -93 560 51 6 1071 229 324 44 18 chr3 63819043 63819156 -95780627 - PB1D7 SINE Alu -1 119 4 6 1071 432 261 92 0 chr3 63819870 63819989 -95779794 - ID_B1 SINE B4 -3 221 92 6 1071 201 94 0 0 chr3 63821032 63821064 -95778719 + (T)n Simple_repeat Simple_repeat 1 32 0 6 1071 207 0 0 0 chr3 63821121 63821144 -95778639 + (T)n Simple_repeat Simple_repeat 1 23 0 6 1071 21 36 0 0 chr3 63822861 63822889 -95776894 + AT_rich Low_complexity Low_complexity 1 28 0 6 1071 1234 87 22 0 chr3 63822890 63823073 -95776710 - B2_Mm2 SINE B2 -4 191 5 6 1071 264 282 50 25 chr3 63823477 63823557 -95776226 - ID SINE ID -138 86 5 6 1071 199 339 16 0 chr3 63823847 63823909 -95775874 - MIR SINE MIR -123 85 23 6 1071 1060 82 14 0 chr3 63826549 63826695 -95773088 - B1_Mus1 SINE Alu 0 148 1 6 1071 259 277 44 0 chr3 63826695 63826724 -95773059 - ORR1D2-int LTR MaLR -863 646 612 6 1071 614 186 147 0 chr3 63827370 63827499 -95772284 - B1_Mur3 SINE Alu 0 149 2 6 1071 823 228 83 143 chr3 63827669 63828053 -95771730 - ORR1D2 LTR MaLR -9 361 1 6 133 28706 128 30 7 chr3 63828094 63833946 -95765837 - Lx5 LINE L1 -3 7047 1071 6 1072 859 176 0 0 chr3 63833941 63834089 -95765694 - Lx5 LINE L1 -5409 1207 1060 6 1072 4540 155 14 19 chr3 63834480 63835182 -95764601 - ETnERV2-int LTR ERVK -214 7192 6494 6 1072 1286 331 9 4 chr3 63835227 63835790 -95763993 - ETnERV2-int LTR ERVK -463 7754 7246 6 1072 341 275 36 73 chr3 63835995 63836242 -95763541 - RLTR45-int LTR ERVK -5609 1635 1398 6 1072 424 227 36 57 chr3 63836642 63836782 -95763001 - ETnERV2-int LTR ERVK -1886 6331 6195 6 1072 6998 35 14 6 chr3 63836795 63837601 -95762182 - L1Md_F3 LINE L1 0 6584 5773 6 1072 530 292 58 33 chr3 63837976 63838314 -95761469 - ETnERV2-int LTR ERVK -781 5386 5077 6 1072 8586 39 0 8 chr3 63838348 63839953 -95759830 - L1Md_F2 LINE L1 -1 6581 4990 6 1072 4134 321 61 46 chr3 63839956 63843039 -95756744 - ETnERV2-int LTR ERVK -2791 5426 2298 6 1072 261 0 0 0 chr3 63843191 63843220 -95756563 + (T)n Simple_repeat Simple_repeat 1 29 0 6 1072 1307 77 11 0 chr3 63844544 63844726 -95755057 + B2_Mm1t SINE B2 10 193 0 6 1072 353 318 20 29 chr3 63845196 63845400 -95754383 - RLTR45-int LTR ERVK -6862 382 181 6 1072 1467 216 146 26 chr3 63846082 63846621 -95753162 - L1Md_F LINE L1 -5544 1075 472 6 1072 487 262 20 47 chr3 63846661 63847000 -95752783 - L1VL1 LINE L1 -6022 400 92 6 1072 450 0 0 0 chr3 63847293 63847343 -95752440 + (TC)n Simple_repeat Simple_repeat 1 50 0 7 1072 282 29 0 0 chr3 63847343 63847377 -95752406 + (CA)n Simple_repeat Simple_repeat 1 35 0 7 1072 228 35 0 0 chr3 63847379 63847408 -95752375 + (TTTA)n Simple_repeat Simple_repeat 4 32 0 7 1072 4173 226 70 40 chr3 63847419 63848656 -95751127 - Lx2 LINE L1 -2 6995 5722 7 1072 7795 62 5 3 chr3 63848651 63850149 -95749634 - L1Md_F2 LINE L1 0 6582 5086 7 1072 2099 106 9 13 chr3 63850159 63850474 -95749309 - IAPLTR2b LTR ERVK -11 316 3 7 1072 4633 89 30 23 chr3 63850476 63851140 -95748643 - IAPEz-int LTR ERVK 0 6481 5813 7 1072 37497 73 29 12 chr3 63851138 63856078 -95743705 - IAPEz-int LTR ERVK -1057 5424 403 7 1072 210 107 54 0 chr3 63856202 63856258 -95743525 + (TCTA)n Simple_repeat Simple_repeat 4 62 0 7 1072 741 155 0 0 chr3 63858163 63858292 -95741491 + CT-rich Low_complexity Low_complexity 1 129 0 7 1072 188 152 0 42 chr3 63860224 63860272 -95739511 + A-rich Low_complexity Low_complexity 3 48 0 7 1072 521 295 52 16 chr3 63860695 63860980 -95738803 + Lx5 LINE L1 895 1190 -6538 7 1072 1275 278 57 8 chr3 63860983 63861353 -95738430 + Lx5 LINE L1 6663 7050 0 7 1072 186 192 0 0 chr3 63861355 63861407 -95738376 + (TAAA)n Simple_repeat Simple_repeat 3 54 0 7 1072 6330 216 46 118 chr3 63861451 63862683 -95737100 + Lx5 LINE L1 2412 3483 -2394 7 1072 446 0 19 0 chr3 63862683 63862737 -95737046 + (GGAA)n Simple_repeat Simple_repeat 3 57 0 7 1072 6330 216 46 118 chr3 63862737 63863802 -95735981 + Lx5 LINE L1 3484 4544 -1333 7 1072 718 204 25 6 chr3 63863787 63863945 -95735838 + Lx5 LINE L1 5625 5785 -1265 7 1072 849 255 43 9 chr3 63863944 63864177 -95735606 + Lx2B LINE L1 6756 6996 -4 7 1072 1254 287 134 18 chr3 63864168 63864869 -95734914 + Lx6 LINE L1 5776 6737 -723 7 1072 1627 154 4 0 chr3 63864891 63865170 -95734613 - L1_Mur2 LINE L1 -1716 4161 3882 7 1072 3948 166 31 7 chr3 63865196 63865937 -95733846 + L1_Mur2 LINE L1 4108 4866 -1011 7 1072 13121 108 7 2 chr3 63865938 63868734 -95731049 + L1VL1 LINE L1 409 3216 -2667 7 1072 6164 96 1 27 chr3 63868734 63869579 -95730204 + L1_Mus2 LINE L1 5742 6564 -2 7 1072 233 360 61 0 chr3 63869733 63869847 -95729936 - MER58A DNA MER1_type -42 182 62 7 1072 275 356 59 26 chr3 63870000 63870153 -95729630 - MER5A DNA MER1_type -25 164 7 7 1072 295 254 30 43 chr3 63871255 63871388 -95728395 - L1_Mm LINE L1 -435 5448 5290 7 1072 291 351 90 15 chr3 63871468 63871601 -95728182 - RSINE1 SINE B4 -19 146 4 7 1072 931 49 16 0 chr3 63871710 63871895 -95727888 - L1Md_A LINE L1 0 6582 6448 7 1072 764 154 0 6 chr3 63871895 63872052 -95727731 + CT-rich Low_complexity Low_complexity 2 157 0 7 1072 364 264 175 8 chr3 63872057 63872183 -95727600 - B1_Mus1 SINE Alu 0 148 2 7 1072 432 99 0 0 chr3 63872369 63872440 -95727343 + (TG)n Simple_repeat Simple_repeat 2 72 0 7 1072 374 140 0 0 chr3 63872559 63872616 -95727167 + L1_Mm LINE L1 4736 4792 -1091 7 1072 23718 77 3 12 chr3 63872945 63876243 -95723540 - L1Md_A LINE L1 -1440 4443 1175 7 1072 2062 199 42 25 chr3 63876238 63876718 -95723065 - L1Md_A LINE L1 -5756 968 481 7 1072 3690 129 15 12 chr3 63876727 63877451 -95722332 - Lx5 LINE L1 -1038 6012 5285 7 1072 9655 148 60 9 chr3 63877458 63880753 -95719030 - L1_Mus4 LINE L1 -10 6626 4178 7 1072 689 295 88 0 chr3 63880910 63881103 -95718680 - ORR1E LTR MaLR -142 217 8 7 1072 780 200 49 89 chr3 63882006 63882209 -95717574 + B3A SINE B2 4 198 0 7 1072 379 152 25 0 chr3 63882971 63883050 -95716733 + (TA)n Simple_repeat Simple_repeat 2 82 0 7 1072 443 339 102 51 chr3 63883118 63883342 -95716441 - B4A SINE B4 -4 288 45 7 1072 3265 71 2 5 chr3 63883342 63883739 -95716044 - MTA_Mm LTR MaLR 0 396 1 7 1072 443 339 102 51 chr3 63883739 63883788 -95715995 - B4A SINE B4 -248 44 1 7 1072 738 280 22 14 chr3 63884124 63884323 -95715460 - B3A SINE B2 -16 200 4 7 1072 613 73 18 27 chr3 63884796 63884908 -95714875 + (GGGAGA)n Simple_repeat Simple_repeat 6 116 0 7 1072 192 164 16 47 chr3 63884912 63884976 -95714807 + GA-rich Low_complexity Low_complexity 4 65 0 7 1072 332 281 95 14 chr3 63885894 63886042 -95713741 + MER5A1 DNA MER1_type 3 162 -4 7 1072 396 0 0 0 chr3 63886302 63886346 -95713437 + (CA)n Simple_repeat Simple_repeat 1 44 0 7 1072 360 64 0 0 chr3 63886475 63886522 -95713261 + (CA)n Simple_repeat Simple_repeat 1 47 0 7 1072 6577 95 12 11 chr3 63887869 63889272 -95710511 - L1VL2 LINE L1 -2149 1466 65 7 1072 725 268 0 0 chr3 63889290 63889443 -95710340 - B3 SINE B2 -25 191 39 7 1072 24 0 0 0 chr3 63889476 63889500 -95710283 + AT_rich Low_complexity Low_complexity 1 24 0 7 1072 297 180 0 0 chr3 63890039 63890128 -95709655 + (TATATG)n Simple_repeat Simple_repeat 2 90 0 7 1072 556 286 73 59 chr3 63890732 63890936 -95708847 + B3 SINE B2 1 207 -9 7 1072 715 207 30 0 chr3 63890935 63891070 -95708713 + B1_Mur3 SINE Alu 10 148 -1 7 1072 496 318 57 24 chr3 63891623 63891712 -95708071 - B4 SINE B4 -18 274 199 7 1072 4003 28 0 11 chr3 63891712 63892188 -95707595 - L1Md_F3 LINE L1 0 6584 6114 7 1072 496 332 88 46 chr3 63892188 63892382 -95707401 - B4 SINE B4 -94 198 2 7 1072 205 200 0 22 chr3 63892880 63892926 -95706857 + GA-rich Low_complexity Low_complexity 4 48 0 7 1072 317 348 62 0 chr3 63894674 63894786 -95704997 - MLT1J LTR MaLR -304 208 90 7 1072 561 30 0 0 chr3 63895023 63895090 -95704693 + (TC)n Simple_repeat Simple_repeat 2 68 0 7 1072 268 250 69 0 chr3 63895090 63895206 -95704577 - L1MC4a LINE L1 -325 7557 7434 7 1072 7305 67 0 18 chr3 63895215 63896228 -95703555 - L1Md_F2 LINE L1 0 6582 5588 7 1072 687 159 20 80 chr3 63896724 63896874 -95702909 - B1_Mur4 SINE Alu -9 141 1 7 1072 1185 148 6 0 chr3 63897153 63897336 -95702447 - ORR1A2 LTR MaLR -130 197 14 7 1072 180 0 0 0 chr3 63897336 63897356 -95702427 + (TG)n Simple_repeat Simple_repeat 1 20 0 7 1072 499 273 12 18 chr3 63897357 63897521 -95702262 - Lx9 LINE L1 -226 7418 7256 7 1072 237 262 81 35 chr3 63897599 63897686 -95702097 + L2c LINE L2 3262 3352 -35 7 1072 22 56 0 0 chr3 63897858 63897894 -95701889 + AT_rich Low_complexity Low_complexity 1 36 0 7 1072 246 81 0 0 chr3 63897984 63898021 -95701762 + (TTTG)n Simple_repeat Simple_repeat 4 40 0 7 1072 558 226 0 0 chr3 63898021 63898123 -95701660 - B1_Mus1 SINE Alu -44 104 3 7 1072 746 190 21 21 chr3 63898177 63898317 -95701466 + B1_Mur2 SINE Alu 3 142 -7 7 1072 297 0 0 0 chr3 63898558 63898591 -95701192 + (TCTG)n Simple_repeat Simple_repeat 3 35 0 7 1072 235 169 29 44 chr3 63898608 63898676 -95701107 - L1MA5 LINE L1 -364 5936 5870 7 1072 562 251 56 46 chr3 63898763 63898959 -95700824 - B3A SINE B2 0 198 1 7 1072 333 284 122 12 chr3 63899030 63899341 -95700442 - L1MA5 LINE L1 -596 5704 5357 7 1072 21 57 0 0 chr3 63899341 63899376 -95700407 + AT_rich Low_complexity Low_complexity 1 35 0 7 1072 462 308 28 7 chr3 63899428 63899572 -95700211 - RSINE1 SINE B4 -15 150 4 7 1072 569 310 112 18 chr3 63899766 63900286 -95699497 - L1MA5 LINE L1 -1098 5045 4473 7 1072 560 194 155 0 chr3 63900286 63900415 -95699368 - B1_Mur1 SINE Alu 0 149 1 7 1072 569 310 112 18 chr3 63900415 63900508 -95699275 - L1MA5 LINE L1 -1671 4472 4375 7 1072 795 50 0 0 chr3 63900522 63900622 -95699161 + (TTCTC)n Simple_repeat Simple_repeat 3 102 0 7 1072 683 151 8 0 chr3 63900622 63900748 -95699035 + CT-rich Low_complexity Low_complexity 3 129 0 7 1072 389 191 201 10 chr3 63900752 63900870 -95698913 - B1_Mus2 SINE Alu -1 147 2 7 1072 527 107 12 0 chr3 63901069 63901153 -95698630 + (TCCC)n Simple_repeat Simple_repeat 1 85 0 7 1072 453 354 76 0 chr3 63901217 63901454 -95698329 - Lx8 LINE L1 -195 7278 7024 7 1072 200 364 0 29 chr3 63901770 63901872 -95697911 + GA-rich Low_complexity Low_complexity 3 101 0 7 1072 421 187 30 7 chr3 63902294 63902429 -95697354 + GA-rich Low_complexity Low_complexity 2 139 0 7 1072 648 186 0 30 chr3 63903361 63903494 -95696289 + RMER1B Other Other 789 917 -149 7 1072 2348 181 78 17 chr3 63903658 63904182 -95695601 + RLTR31_Mm LTR ERVK 3 558 -3 7 1072 2652 148 84 107 chr3 63904257 63904339 -95695444 - RLTR20D LTR ERVK 0 568 479 7 1072 258 32 0 0 chr3 63904339 63904370 -95695413 + (CA)n Simple_repeat Simple_repeat 2 32 0 7 1072 315 0 0 0 chr3 63904370 63904404 -95695379 + (GA)n Simple_repeat Simple_repeat 2 36 0 7 1072 2652 148 84 107 chr3 63904404 63904901 -95694882 - RLTR20D LTR ERVK -90 478 2 7 1072 333 319 62 0 chr3 63905823 63905936 -95693847 + Lx7 LINE L1 7189 7308 -388 7 1072 324 0 0 0 chr3 63905938 63905974 -95693809 + (TG)n Simple_repeat Simple_repeat 2 37 0 7 1072 22 0 0 0 chr3 63906009 63906031 -95693752 + AT_rich Low_complexity Low_complexity 1 22 0 7 1072 208 295 0 0 chr3 63906031 63906109 -95693674 + T-rich Low_complexity Low_complexity 1 78 0 7 1072 215 31 31 0 chr3 63908357 63908389 -95691394 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 7 1072 584 275 56 10 chr3 63909754 63909949 -95689834 + B3 SINE B2 5 208 -8 7 1072 1159 139 16 0 chr3 63910301 63910488 -95689295 - B2_Mm2 SINE B2 -5 190 1 7 1072 21 95 0 0 chr3 63911698 63911761 -95688022 + AT_rich Low_complexity Low_complexity 1 63 0 7 1072 2062 16 0 0 chr3 63912640 63912890 -95686893 - L1Md_F2 LINE L1 -592 5990 5741 7 1072 5077 33 35 0 chr3 63912890 63913499 -95686284 + L1Md_F2 LINE L1 5951 6580 -2 7 1072 853 224 5 32 chr3 63913499 63913526 -95686257 - Lx3A LINE L1 -1240 5741 5720 7 1072 474 109 0 0 chr3 63913591 63913655 -95686128 + U6 snRNA snRNA 40 103 -4 7 1072 4304 43 0 17 chr3 63913786 63914323 -95685460 + L1Md_F2 LINE L1 6055 6582 0 7 1072 269 135 19 0 chr3 63914454 63914506 -95685277 + GA-rich Low_complexity Low_complexity 5 57 0 7 1072 646 238 77 125 chr3 63914921 63915233 -95684550 + Lx8 LINE L1 7172 7468 -5 7 1072 30 0 0 0 chr3 63915233 63915263 -95684520 + AT_rich Low_complexity Low_complexity 1 30 0 7 1072 713 227 13 20 chr3 63915650 63915785 -95683998 - RMER21A LTR ERV1 -7 835 702 7 1072 2205 158 37 0 chr3 63915785 63916163 -95683620 - RMER21A LTR ERV1 0 947 556 7 1072 974 112 0 0 chr3 63916163 63916297 -95683486 + RMER17A2 LTR ERVK 1 134 -772 7 1072 583 99 0 0 chr3 63916298 63916379 -95683404 - MERVK26-int LTR ERVK -5555 1364 1284 7 1072 207 0 0 0 chr3 63916380 63916403 -95683380 + (T)n Simple_repeat Simple_repeat 1 23 0 8 1072 7784 103 65 22 chr3 63916476 63917710 -95682073 - MERVK26-int LTR ERVK -5621 1298 12 7 1072 4893 112 81 14 chr3 63917711 63918551 -95681232 - RMER17A2 LTR ERVK -10 896 1 7 1072 317 192 192 0 chr3 63918551 63918629 -95681154 - RMER21A LTR ERV1 -386 561 469 7 1072 1471 255 46 63 chr3 63918624 63919038 -95680745 + MTD LTR MaLR 11 417 -2 8 1072 25 31 0 0 chr3 63919801 63919833 -95679950 + AT_rich Low_complexity Low_complexity 1 32 0 8 1072 1831 202 98 8 chr3 63923189 63923707 -95676076 + Lx5 LINE L1 2339 2903 -2974 8 1072 6904 160 35 4 chr3 63923706 63925450 -95674333 + Lx LINE L1 4523 6314 -340 8 1072 5994 73 20 0 chr3 63925450 63926240 -95673543 - RLTR13D1 LTR ERVK 0 806 1 8 1072 6017 160 6 8 chr3 63926240 63926577 -95673206 + Lx LINE L1 6315 6654 0 8 1072 3394 163 21 36 chr3 63926577 63926941 -95672842 + Lx5 LINE L1 2907 3265 -2615 8 1072 3649 119 29 50 chr3 63926941 63927560 -95672223 + Lx LINE L1 6047 6652 -2 8 1072 3394 163 21 36 chr3 63927560 63927784 -95671999 + Lx5 LINE L1 3266 3472 -2408 8 1072 207 0 0 0 chr3 63927784 63927807 -95671976 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 8 1072 3394 163 21 36 chr3 63927807 63927966 -95671817 + Lx5 LINE L1 3473 3643 -2237 8 1072 4394 231 59 31 chr3 63927984 63930024 -95669759 + Lx5 LINE L1 4902 7001 -49 8 1072 21 82 0 0 chr3 63930071 63930120 -95669663 + AT_rich Low_complexity Low_complexity 1 49 0 8 1072 3678 216 48 18 chr3 63930840 63931680 -95668103 - Lx5 LINE L1 -2 7048 6184 8 1072 1156 166 50 1 chr3 63931693 63931969 -95667814 + L1_Mur2 LINE L1 1174 1463 -4414 8 1072 2039 186 114 70 chr3 63932205 63932256 -95667527 + RMER15 LTR ERVL 3 56 -519 8 1072 524 56 14 0 chr3 63932256 63932328 -95667455 + (TCTA)n Simple_repeat Simple_repeat 4 76 0 8 1072 1941 110 0 18 chr3 63932328 63932614 -95667169 - L1_Mus2 LINE L1 -8 6558 6278 8 1072 2039 186 114 70 chr3 63932614 63933105 -95666678 + RMER15 LTR ERVL 57 569 -6 8 1072 1757 154 14 58 chr3 63933198 63933542 -95666241 - ORR1A4 LTR MaLR 0 329 1 8 1072 948 279 120 23 chr3 63935092 63935459 -95664324 - MTD LTR MaLR -36 383 3 8 1072 262 294 99 58 chr3 63935461 63935754 -95664029 + L1MC4 LINE L1 6765 7069 -973 8 1072 308 275 27 81 chr3 63935968 63936079 -95663704 - B1F SINE Alu 0 149 45 8 1072 234 250 0 0 chr3 63936276 63936328 -95663455 + B3A SINE B2 3 54 -144 8 1072 648 289 18 42 chr3 63936556 63936773 -95663010 + B3 SINE B2 5 216 0 8 1072 26 0 0 0 chr3 63938696 63938722 -95661061 + AT_rich Low_complexity Low_complexity 1 26 0 8 1072 287 265 12 24 chr3 63940044 63940129 -95659654 + GA-rich Low_complexity Low_complexity 3 86 0 8 1072 1319 35 0 6 chr3 63940771 63940941 -95658842 + (TTTC)n Simple_repeat Simple_repeat 3 171 0 8 1072 692 196 7 22 chr3 63940941 63941077 -95658706 - B1_Mur4 SINE Alu -15 135 2 8 1072 630 279 83 43 chr3 63942309 63942586 -95657197 - B4A SINE B4 0 292 5 8 1072 331 348 45 13 chr3 63943913 63944070 -95655713 - MER5A1 DNA MER1_type -2 164 3 8 1072 230 308 0 0 chr3 63945069 63945121 -95654662 - tRNA-Ala-GCY_ tRNA tRNA -23 52 1 8 1072 888 314 121 11 chr3 63948164 63948537 -95651246 + MTD LTR MaLR 6 419 0 8 1072 1930 241 88 23 chr3 63948748 63949316 -95650467 + Lx7 LINE L1 6432 7036 -660 8 1072 4176 100 67 19 chr3 63949599 63950223 -95649560 - Lx3_Mus LINE L1 0 7009 6356 8 1072 7644 42 2 5 chr3 63950223 63951217 -95648566 + L1Md_F2 LINE L1 5652 6582 0 8 1072 1982 116 56 18 chr3 63951217 63951558 -95648225 - Lx3_Mus LINE L1 -639 6370 6017 8 1072 2620 91 48 15 chr3 63951553 63952041 -95647742 + Lx3_Mus LINE L1 5473 5969 -1040 8 1072 354 245 37 28 chr3 63952243 63952352 -95647431 - B1_Mur4 SINE Alu 0 150 41 8 1072 265 276 38 50 chr3 63952357 63952437 -95647346 - B1_Mur3 SINE Alu -51 98 20 8 1072 213 39 0 0 chr3 63952888 63952914 -95646869 + (CTAA)n Simple_repeat Simple_repeat 3 28 0 8 1072 5852 93 47 84 chr3 63953763 63954519 -95645264 - L1_Mus3 LINE L1 -1 6637 5841 8 1072 2462 53 88 0 chr3 63954519 63954837 -95644946 + ORR1A1 LTR MaLR 1 346 0 8 1072 5852 93 47 84 chr3 63954837 63955157 -95644626 - L1_Mus3 LINE L1 -798 5840 5600 8 1072 21 0 0 0 chr3 63956315 63956336 -95643447 + AT_rich Low_complexity Low_complexity 1 21 0 8 1072 207 114 0 0 chr3 63956399 63956434 -95643349 + (GA)n Simple_repeat Simple_repeat 2 36 0 8 1072 198 0 0 0 chr3 63956452 63956474 -95643309 + (TA)n Simple_repeat Simple_repeat 1 22 0 8 1072 213 39 0 0 chr3 63956474 63956499 -95643284 + (GA)n Simple_repeat Simple_repeat 2 27 0 8 1072 387 266 104 97 chr3 63957249 63957528 -95642255 + RLTR20D LTR ERVK 5 285 -283 8 1072 379 286 14 101 chr3 63957516 63957664 -95642119 + RLTR20D LTR ERVK 423 557 -21 8 1072 250 274 14 0 chr3 63958018 63958091 -95641692 + MYSERV16_I-int LTR ERVK 604 677 -2165 8 1072 408 20 0 0 chr3 63958348 63958397 -95641386 + (CA)n Simple_repeat Simple_repeat 2 50 0 8 1072 905 206 200 21 chr3 63958662 63959209 -95640574 + MYSERV16_I-int LTR ERVK 1 486 -1840 8 1072 1314 199 34 49 chr3 63959233 63959560 -95640223 + MYSERV16_I-int LTR ERVK 612 933 -1393 8 1072 906 150 53 0 chr3 63959572 63959759 -95640024 + MYSERV16_I-int LTR ERVK 1111 1307 -1019 8 1072 3239 171 68 14 chr3 63959749 63960533 -95639250 + MYSERV16_I-int LTR ERVK 1493 2318 -8 8 1072 751 324 34 57 chr3 63960541 63960839 -95638944 + RLTR20D LTR ERVK 1 291 -277 8 1072 315 0 0 0 chr3 63960860 63960895 -95638888 + (TG)n Simple_repeat Simple_repeat 1 35 0 8 1072 1422 134 0 0 chr3 63961494 63961711 -95638072 - Lx2 LINE L1 -6 6991 6775 8 1072 12644 149 14 42 chr3 63961711 63963028 -95636755 - Lx2 LINE L1 -354 6643 5384 8 16 2591 62 128 40 chr3 63963028 63963428 -95636355 - L1_Mus2 LINE L1 0 6566 6132 8 1073 12644 196 30 173 chr3 63963428 63964137 -95635646 - Lx2 LINE L1 -500 5383 4946 8 1073 4144 49 0 10 chr3 63964137 63964656 -95635127 + L1Md_F3 LINE L1 6071 6584 0 8 1073 12644 196 30 173 chr3 63964656 63966635 -95633148 - Lx2 LINE L1 -938 4945 2884 8 1073 4422 73 63 5 chr3 63966635 63967253 -95632530 + L1Md_F2 LINE L1 5921 6574 -8 8 1073 12644 196 30 173 chr3 63967253 63967860 -95631923 - Lx2 LINE L1 -3000 2883 2794 8 1073 513 0 0 0 chr3 63967860 63967917 -95631866 + (TC)n Simple_repeat Simple_repeat 1 57 0 8 1073 12644 177 24 136 chr3 63967917 63969779 -95630004 - Lx2 LINE L1 -3090 2793 940 8 1073 11445 158 8 23 chr3 63969779 63970052 -95629731 - ETnERV2-int LTR ERVK -1179 6227 6001 8 1073 405 0 0 0 chr3 63970052 63970097 -95629686 + (CAAAA)n Simple_repeat Simple_repeat 2 46 0 8 1073 11445 138 6 5 chr3 63970097 63971675 -95628108 - ETnERV2-int LTR ERVK -1406 6000 4420 8 1073 9086 138 34 12 chr3 63971672 63973469 -95626314 - ETnERV2-int LTR ERVK -3312 4094 1565 8 1073 1960 123 0 0 chr3 63973460 63973761 -95626022 - ETnERV2-int LTR ERVK -5162 2244 1944 8 1073 2929 114 86 6 chr3 63973756 63974293 -95625490 - ETnERV2-int LTR ERVK -5756 1650 1071 8 1073 911 264 35 60 chr3 63974303 63974673 -95625110 - ETnERV2-int LTR ERVK -2927 387 27 8 1073 2927 88 10 8 chr3 63974691 63975091 -95624692 - RLTR9D LTR ERVK 0 403 3 8 1073 1287 57 0 0 chr3 63975128 63975305 -95624478 + (CAGAG)n Simple_repeat Simple_repeat 3 179 0 8 1073 1335 50 0 0 chr3 63975316 63975496 -95624287 + (CAGAG)n Simple_repeat Simple_repeat 1 180 0 8 1073 1389 58 0 2 chr3 63975516 63976103 -95623680 + (CAGAG)n Simple_repeat Simple_repeat 1 586 0 8 1073 1290 56 0 0 chr3 63976116 63976296 -95623487 + (CAGAG)n Simple_repeat Simple_repeat 1 180 0 8 1073 1010 92 0 6 chr3 63976304 63976416 -95623367 + (CACAG)n Simple_repeat Simple_repeat 4 115 0 8 1073 1455 28 0 0 chr3 63976416 63976596 -95623187 + (CAGAG)n Simple_repeat Simple_repeat 1 180 0 8 1073 1010 92 0 6 chr3 63976596 63976658 -95623125 + (CACAG)n Simple_repeat Simple_repeat 1 62 0 8 1073 247 226 11 35 chr3 63976651 63976728 -95623055 + A-rich Low_complexity Low_complexity 1 77 0 8 1073 195 69 0 0 chr3 63976728 63976757 -95623026 + (CAGGA)n Simple_repeat Simple_repeat 5 33 0 8 1073 1594 27 5 0 chr3 63977461 63977646 -95622137 - B2_Mm1t SINE B2 -5 188 3 8 1073 31499 65 22 3 chr3 63977790 63980845 -95618938 - L1Md_F3 LINE L1 -15 6569 3494 8 1073 330 26 0 0 chr3 63980845 63980884 -95618899 + (TTTTG)n Simple_repeat Simple_repeat 1 39 0 8 1073 31499 100 26 12 chr3 63980884 63983929 -95615854 - L1Md_F3 LINE L1 -2390 3493 361 8 1073 3470 160 23 7 chr3 63983928 63984620 -95615163 + L1_Mur2 LINE L1 4218 4920 -957 8 1073 6317 109 13 6 chr3 63984627 63985601 -95614182 - L1_Mus4 LINE L1 0 6636 5656 8 1073 2102 128 27 27 chr3 63985601 63985969 -95613814 + RLTR9A LTR ERVK 1 368 0 8 1073 206 164 18 0 chr3 63986285 63986340 -95613443 + A-rich Low_complexity Low_complexity 5 60 0 8 1073 3775 168 62 56 chr3 63986371 63987627 -95612156 + RMER16-int LTR ERVK 309 2247 -5159 8 1073 11175 158 64 49 chr3 63987628 63990459 -95609324 + RMER16-int LTR ERVK 1653 4176 -1230 8 1073 364 266 15 53 chr3 63990456 63990587 -95609196 + RMER16-int LTR ERVK 6086 6211 -1195 8 1073 389 259 168 17 chr3 63990653 63990826 -95608957 + RMER16-int LTR ERVK 6223 6421 -985 8 1073 351 93 0 36 chr3 63991041 63991097 -95608686 + RMER16-int LTR ERVK 7331 7384 -22 8 1073 2093 127 39 11 chr3 63991120 63991478 -95608305 + RLTR9A LTR ERVK 1 368 0 8 1073 3254 217 20 1 chr3 63991478 63992222 -95607561 - L1_Mm LINE L1 -222 5661 4904 8 1073 6669 122 31 12 chr3 63992221 63992436 -95607347 + L1_Mus3 LINE L1 5418 5632 -251 8 1073 2719 72 0 0 chr3 63992436 63992782 -95607001 + ORR1A1 LTR MaLR 1 346 0 8 1073 6669 107 22 6 chr3 63992782 63993768 -95606015 + L1_Mus3 LINE L1 5630 6636 -2 8 1073 1251 193 0 68 chr3 63993772 63994083 -95605700 - L1_Mm LINE L1 -937 4946 4657 8 1073 4359 152 10 0 chr3 63994081 63994901 -95604882 + L1_Mm LINE L1 3838 4665 -1218 8 1073 708 217 0 0 chr3 63994899 63995056 -95604727 + Lx2 LINE L1 4926 5082 -804 8 1073 3520 160 35 27 chr3 63995056 63995505 -95604278 - RLTR26 LTR ERVK 0 642 194 8 1073 6175 79 6 22 chr3 63995505 63996374 -95603409 - RLTR13A LTR ERVK 0 855 1 8 1073 3520 160 35 27 chr3 63996374 63996561 -95603222 - RLTR26 LTR ERVK -449 193 1 8 1073 7234 155 28 52 chr3 63996561 63998515 -95601268 + Lx2 LINE L1 5068 6996 -1 8 1073 1584 279 20 40 chr3 63998509 63999138 -95600645 + Lx5 LINE L1 6461 7033 -17 8 1073 31 58 0 0 chr3 63999167 63999219 -95600564 + AT_rich Low_complexity Low_complexity 1 52 0 8 1073 2856 44 6 0 chr3 63999611 63999955 -95599828 - ORR1A0 LTR MaLR 0 346 1 8 1073 321 294 54 115 chr3 64000235 64000496 -95599287 + MER33 DNA MER1_type 10 254 -70 1 1073 1950 238 51 49 chr3 64000767 64001336 -95598447 + RMER15 LTR ERVL 1 570 -5 2 1073 2504 138 103 20 chr3 64001533 64001978 -95597805 - RLTR45 LTR ERVK 0 482 1 3 1073 235 262 34 56 chr3 64003219 64003308 -95596475 - U1 snRNA snRNA -41 124 38 4 1073 216 0 0 0 chr3 64003310 64003334 -95596449 + (T)n Simple_repeat Simple_repeat 1 24 0 5 1073 3160 155 9 22 chr3 64004900 64005434 -95594349 - RLTR1D LTR ERV1 -17 588 62 6 1073 2213 129 62 34 chr3 64006708 64007094 -95592689 - RLTR9D LTR ERVK -6 397 1 7 1073 195 100 0 0 chr3 64007331 64007361 -95592422 + (TTTTA)n Simple_repeat Simple_repeat 1 30 0 8 1073 428 328 0 25 chr3 64007693 64007815 -95591968 - B1_Mur4 SINE Alu -6 144 26 9 1073 28 48 0 0 chr3 64008247 64008289 -95591494 + AT_rich Low_complexity Low_complexity 1 42 0 1 1073 405 291 55 34 chr3 64008755 64008901 -95590882 - B4A SINE B4 -14 278 130 1 1073 3445 64 55 4 chr3 64008927 64009399 -95590384 - LTRIS2 LTR ERV1 0 564 69 1 1073 370 240 40 40 chr3 64009416 64009516 -95590267 - B4 SINE B4 -191 101 2 1 1073 393 22 0 0 chr3 64009684 64009730 -95590053 + (TATG)n Simple_repeat Simple_repeat 3 48 0 1 1073 2093 135 54 88 chr3 64010056 64010463 -95589320 + RLTR9C LTR ERVK 1 393 0 1 1073 1051 204 314 51 chr3 64010512 64010912 -95588871 - L1_Mur3 LINE L1 -3572 2305 1805 1 1073 235 222 0 0 chr3 64010914 64010959 -95588824 + Lx5 LINE L1 6854 6898 -152 1 1073 1442 228 3 0 chr3 64011003 64011292 -95588491 - Lx LINE L1 -1 6653 6364 1 1073 3562 46 2 0 chr3 64011296 64011691 -95588092 - MTA_Mm LTR MaLR 0 396 1 1 1073 3377 200 3 0 chr3 64011695 64012340 -95587443 + L1_Mur2 LINE L1 4570 5216 -661 1 1073 1913 263 28 8 chr3 64012336 64012835 -95586948 + Lx5 LINE L1 6542 7050 0 2 1073 389 135 11 0 chr3 64012835 64012924 -95586859 + (TAGA)n Simple_repeat Simple_repeat 1 90 0 2 1073 1248 70 0 0 chr3 64013263 64013406 -95586377 - B1_Mus1 SINE Alu -5 143 1 2 1073 505 197 429 0 chr3 64014129 64014276 -95585507 - B3 SINE B2 -6 210 1 2 1073 5595 62 1 0 chr3 64014828 64015517 -95584266 + L1Md_F2 LINE L1 4898 5587 -296 2 1073 8496 43 18 0 chr3 64015517 64016494 -95583289 + L1Md_F2 LINE L1 5588 6582 0 2 1073 295 343 44 7 chr3 64017045 64017180 -95582603 - MER5A1 DNA MER1_type -2 164 25 2 1073 189 94 0 0 chr3 64018261 64018293 -95581490 + (A)n Simple_repeat Simple_repeat 1 32 0 2 1073 621 181 22 59 chr3 64018312 64018329 -95581454 + B1F SINE Alu 20 29 -120 2 1073 6917 59 5 0 chr3 64018329 64019146 -95580637 - L1Md_F2 LINE L1 -1 6581 5761 2 1073 849 94 8 0 chr3 64019146 64019263 -95580520 + B1_Mus2 SINE Alu 30 147 0 2 1073 25 0 0 0 chr3 64019263 64019288 -95580495 + AT_rich Low_complexity Low_complexity 1 25 0 3 1073 1165 252 30 106 chr3 64019352 64019756 -95580027 + Lx5 LINE L1 6678 7050 0 3 1073 30 0 0 0 chr3 64019787 64019817 -95579966 + AT_rich Low_complexity Low_complexity 1 30 0 3 1073 1126 103 0 7 chr3 64019978 64020124 -95579659 + B1_Mus1 SINE Alu 2 146 -2 3 1073 1003 68 114 0 chr3 64020362 64020494 -95579289 - B1_Mus1 SINE Alu 0 148 2 3 1073 753 309 136 11 chr3 64022568 64022937 -95576846 + MTD LTR MaLR 5 419 0 3 1073 2019 235 69 27 chr3 64023224 64023484 -95576299 + Lx7 LINE L1 6498 6768 -928 3 1073 4209 59 0 67 chr3 64023484 64024050 -95575733 - L1Md_F2 LINE L1 -11 6571 6044 3 1073 2019 235 69 27 chr3 64024050 64024310 -95575473 + Lx7 LINE L1 6769 7040 -656 3 1073 411 208 6 44 chr3 64024772 64024883 -95574900 - B1_Mur4 SINE Alu 0 150 40 3 1073 360 77 30 15 chr3 64024884 64024950 -95574833 + (CCCCCT)n Simple_repeat Simple_repeat 2 68 0 3 1073 225 246 15 0 chr3 64024950 64025015 -95574768 + CT-rich Low_complexity Low_complexity 2 67 0 4 1073 285 259 0 0 chr3 64025040 64025094 -95574689 - PB1D7 SINE Alu -47 73 20 4 1073 26 50 0 0 chr3 64025528 64025568 -95574215 + AT_rich Low_complexity Low_complexity 1 40 0 4 1073 263 106 0 41 chr3 64027026 64027075 -95572708 + (TTTTC)n Simple_repeat Simple_repeat 4 50 0 4 1073 1199 55 0 27 chr3 64027076 64027226 -95572557 - B1_Mus1 SINE Alu -1 147 2 4 1073 39 50 0 0 chr3 64028265 64028325 -95571458 + AT_rich Low_complexity Low_complexity 1 60 0 4 1073 241 376 56 7 chr3 64028330 64028472 -95571311 - MIRb SINE MIR -17 251 103 4 1073 22 56 0 0 chr3 64028989 64029025 -95570758 + AT_rich Low_complexity Low_complexity 1 36 0 4 1073 462 49 0 0 chr3 64029323 64029384 -95570399 + (TG)n Simple_repeat Simple_repeat 1 61 0 4 1073 319 269 225 50 chr3 64029722 64029980 -95569803 + L1M5 LINE L1 3752 4054 -2092 4 1073 669 285 42 26 chr3 64030634 64030825 -95568958 + B3A SINE B2 1 194 -4 5 1073 329 342 69 6 chr3 64031313 64031472 -95568311 - MER58A DNA MER1_type -42 182 14 5 1073 450 316 14 35 chr3 64031579 64031720 -95568063 - RSINE1 SINE B4 -24 141 4 5 1073 724 129 15 8 chr3 64031833 64031966 -95567817 + CT-rich Low_complexity Low_complexity 4 137 0 5 1073 377 226 176 8 chr3 64032000 64032125 -95567658 - B1_Mus1 SINE Alu -1 147 2 5 1073 224 77 26 0 chr3 64032328 64032367 -95567416 + (TG)n Simple_repeat Simple_repeat 1 40 0 5 1073 2273 143 22 37 chr3 64032376 64032783 -95567000 - RLTR22_Mur LTR ERVK -1447 401 1 5 1073 243 61 0 0 chr3 64032804 64032837 -95566946 + (CA)n Simple_repeat Simple_repeat 2 34 0 5 1073 931 263 94 40 chr3 64032838 64033166 -95566617 - Lx9 LINE L1 -564 7080 6735 5 1073 22 0 0 0 chr3 64033668 64033690 -95566093 + AT_rich Low_complexity Low_complexity 1 22 0 5 1073 1290 194 47 0 chr3 64033691 64033944 -95565839 - Lx LINE L1 -2 6995 6731 6 1073 3858 170 18 0 chr3 64033948 64034612 -95565171 + Lx2 LINE L1 6040 6715 -282 6 1073 1597 48 0 45 chr3 64034824 64035022 -95564761 + B2_Mm1t SINE B2 1 189 -4 6 1073 342 0 0 0 chr3 64035123 64035161 -95564622 + (TG)n Simple_repeat Simple_repeat 2 39 0 6 1073 23 54 0 0 chr3 64035230 64035267 -95564516 + AT_rich Low_complexity Low_complexity 1 37 0 6 1073 815 244 84 29 chr3 64035885 64036193 -95563590 + Lx9 LINE L1 7316 7640 -4 6 1073 28 0 0 0 chr3 64036359 64036387 -95563396 + AT_rich Low_complexity Low_complexity 1 28 0 6 1073 2842 157 33 35 chr3 64036533 64037048 -95562735 - Lx LINE L1 0 6654 6141 6 1073 1389 84 6 0 chr3 64037068 64037247 -95562536 - L1_Mus1 LINE L1 0 6567 6388 6 1073 3009 9 3 0 chr3 64037371 64037692 -95562091 - RLTRETN_Mm LTR ERVK 0 322 1 6 1073 479 294 19 45 chr3 64038115 64038382 -95561401 + RNERVK23-int LTR ERVK 181 440 -6804 6 1073 1297 318 57 62 chr3 64039095 64039362 -95560421 + RNERVK23-int LTR ERVK 1412 1826 -6391 6 1073 3209 107 27 39 chr3 64039362 64039850 -95559933 + RLTR45 LTR ERVK 1 482 0 7 1073 1603 314 57 54 chr3 64039850 64041398 -95558385 + RNERVK23-int LTR ERVK 1532 3484 -4733 6 1073 30 0 0 0 chr3 64041398 64041428 -95558355 + AT_rich Low_complexity Low_complexity 1 30 0 7 1073 8086 138 19 9 chr3 64041428 64043176 -95556607 - Lx3C LINE L1 -2 6974 5207 7 1073 42157 8 0 1 chr3 64043176 64050192 -95549591 - L1Md_A LINE L1 0 6582 1 7 1073 2270 312 72 71 chr3 64050194 64052419 -95547364 + RNERVK23-int LTR ERVK 3475 5702 -2515 6 1073 265 341 14 14 chr3 64052807 64052947 -95546836 + MMERGLN-int LTR ERV1 5921 6060 -1496 7 1073 1507 306 50 50 chr3 64053404 64053727 -95546056 + RNERVK23-int LTR ERVK 6810 7129 -1088 6 1073 1676 42 0 5 chr3 64053727 64053920 -95545863 - B2_Mm1t SINE B2 0 193 2 7 1073 1507 306 50 50 chr3 64053920 64054261 -95545522 + RNERVK23-int LTR ERVK 7130 7479 -738 6 1073 2948 130 29 25 chr3 64054261 64054741 -95545042 + RLTR45 LTR ERVK 1 482 0 7 1073 1507 306 50 50 chr3 64054741 64055028 -95544755 + RNERVK23-int LTR ERVK 7480 7762 -455 6 1073 5405 88 4 6 chr3 64055977 64056705 -95543078 - L1_Mus2 LINE L1 -168 6398 5672 7 1073 3353 143 22 15 chr3 64056699 64057548 -95542235 - Lx LINE L1 -497 6157 5302 7 1073 1088 148 0 0 chr3 64057535 64057731 -95542052 - L1_Mur2 LINE L1 -2135 3742 3547 7 1073 2029 54 0 0 chr3 64057771 64058031 -95541752 - RLTR13C2 LTR ERVK -131 677 418 8 1073 13762 48 2 1 chr3 64058031 64059764 -95540019 - Lx LINE L1 -644 5239 3505 7 1073 3306 65 5 0 chr3 64059764 64060194 -95539589 - RLTR13C2 LTR ERVK -376 432 1 8 1073 236 62 0 0 chr3 64060194 64060226 -95539557 - MusHAL1 LINE L1 -350 2362 2331 8 1073 635 232 31 52 chr3 64060277 64060468 -95539315 + MTD LTR MaLR 229 415 -4 8 1073 2590 102 55 0 chr3 64060580 64060980 -95538803 + BGLII_Mus LTR ERVK 1 422 0 8 1073 217 211 0 0 chr3 64061238 64061266 -95538517 + A-rich Low_complexity Low_complexity 2 29 0 8 1073 399 21 0 0 chr3 64061266 64061314 -95538469 + (CAGAC)n Simple_repeat Simple_repeat 1 48 0 8 1073 217 211 0 0 chr3 64061314 64061337 -95538446 + A-rich Low_complexity Low_complexity 30 52 0 8 1073 771 159 14 7 chr3 64061662 64061801 -95537982 + Lx LINE L1 6459 6598 -56 8 1073 24 67 0 0 chr3 64063979 64064024 -95535759 + AT_rich Low_complexity Low_complexity 1 45 0 8 1073 626 271 43 25 chr3 64066579 64066877 -95532906 + Lx6 LINE L1 892 1197 -6531 9 1073 1297 291 38 0 chr3 64066876 64067247 -95532536 + Lx5 LINE L1 6666 7050 0 9 1073 251 182 30 0 chr3 64067247 64067313 -95532470 + (TGAA)n Simple_repeat Simple_repeat 1 68 0 9 1073 4107 226 14 7 chr3 64067392 64068429 -95531354 + Lx6 LINE L1 2418 3462 -2415 9 1073 447 181 17 8 chr3 64068455 64068572 -95531211 + GA-rich Low_complexity Low_complexity 4 121 0 9 1073 721 232 180 0 chr3 64068620 64068677 -95531106 + Lx6 LINE L1 3547 3637 -2243 9 1073 261 0 0 0 chr3 64068677 64068706 -95531077 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 9 1073 721 232 180 0 chr3 64068706 64068915 -95530868 + Lx6 LINE L1 3637 3860 -2020 9 1073 2267 138 22 29 chr3 64068916 64069328 -95530455 - RLTR9E LTR ERVK 0 409 1 9 1073 1121 134 29 0 chr3 64069532 64069704 -95530079 - ETnERV2-int LTR ERVK -981 6425 6249 9 1073 779 179 19 30 chr3 64069699 64069910 -95529873 + ETnERV2-int LTR ERVK 6106 6222 -1184 9 1073 2634 207 43 11 chr3 64069921 64070589 -95529194 + Lx6 LINE L1 3855 4544 -1333 9 1073 614 225 0 8 chr3 64070602 64070732 -95529051 + Lx6 LINE L1 5647 5775 -102 9 1073 700 299 13 13 chr3 64070742 64070976 -95528807 + Lx2B LINE L1 6764 6997 -3 9 1073 1181 302 69 18 chr3 64070966 64071659 -95528124 + Lx6 LINE L1 5776 6740 -956 9 1073 1498 166 11 0 chr3 64071697 64071968 -95527815 - L1_Mur2 LINE L1 -1720 4157 3884 9 1073 3897 186 17 199 chr3 64071969 64073121 -95526662 + L1_Mur2 LINE L1 4081 4950 -927 9 1073 275 0 0 28 chr3 64073121 64073157 -95526626 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 1 1073 3897 186 17 199 chr3 64073157 64073539 -95526244 + L1_Mur2 LINE L1 4951 5335 -542 9 1073 3479 186 13 22 chr3 64073520 64074197 -95525586 + Lx2 LINE L1 5951 6621 -376 1 1073 1733 316 15 22 chr3 64074191 64074774 -95525009 + Lx5 LINE L1 6455 7033 -17 1 1073 293 265 84 117 chr3 64075551 64075790 -95523993 + MER33 DNA MER1_type 27 257 -67 1 1073 1747 228 78 57 chr3 64076056 64076619 -95523164 + RMER15 LTR ERVL 1 575 0 1 1073 26 74 0 0 chr3 64080771 64080825 -95518958 + AT_rich Low_complexity Low_complexity 1 54 0 1 1073 1500 43 22 0 chr3 64080943 64081128 -95518655 - B2_Mm1t SINE B2 0 193 5 1 1073 1261 20 0 0 chr3 64081412 64081559 -95518224 + B1_Mm SINE Alu 1 147 0 1 1073 301 289 246 8 chr3 64081562 64081806 -95517977 + HAL1 LINE L1 889 1190 -1317 1 1073 549 264 14 21 chr3 64082446 64082589 -95517194 - B1_Mur4 SINE Alu -7 143 2 1 1073 186 133 0 0 chr3 64083122 64083152 -95516631 + (T)n Simple_repeat Simple_repeat 1 30 0 1 1073 3124 100 41 43 chr3 64083155 64083647 -95516136 - L1_Mus2 LINE L1 0 6566 6076 1 1073 461 336 45 11 chr3 64084255 64084520 -95515263 - B4A SINE B4 -14 278 5 1 1073 584 27 14 0 chr3 64084677 64084751 -95515032 + (TCTA)n Simple_repeat Simple_repeat 4 78 0 1 1073 359 167 71 91 chr3 64085153 64085252 -95514531 - L1_Mur1 LINE L1 -3575 2311 2215 1 1073 947 258 59 25 chr3 64085249 64085571 -95514212 - L1_Mur3 LINE L1 -3753 2127 1795 1 1073 250 268 0 0 chr3 64085576 64085632 -95514151 + Lx5 LINE L1 6854 6909 -141 1 1073 1571 298 34 14 chr3 64085684 64086191 -95513592 + Lx5 LINE L1 6532 7048 -2 1 1073 2403 132 71 12 chr3 64086474 64086896 -95512887 - Lx LINE L1 -3 6651 6205 1 1073 4425 126 32 0 chr3 64086910 64087600 -95512183 - Lx3_Mus LINE L1 0 7009 6298 1 1073 3521 134 53 8 chr3 64087600 64088203 -95511580 + Lx3_Mus LINE L1 5682 6311 -698 1 1073 3906 130 8 2 chr3 64088192 64088786 -95510997 - Lx LINE L1 -430 6224 5627 1 1073 413 277 10 0 chr3 64089676 64089777 -95510006 - B2_Mm2 SINE B2 -93 102 1 1 1073 228 372 56 35 chr3 64089830 64089972 -95509811 + B1F2 SINE Alu 5 149 0 1 1073 201 209 14 43 chr3 64090547 64090617 -95509166 + T-rich Low_complexity Low_complexity 6 73 0 1 1073 289 299 68 13 chr3 64090870 64091021 -95508762 - MER5A1 DNA MER1_type -2 164 9 1 1073 1036 272 57 78 chr3 64092176 64092562 -95507221 + Lx5 LINE L1 6670 7047 -3 1 1074 594 352 127 9 chr3 64095591 64095921 -95503862 + MTD LTR MaLR 51 419 0 1 1074 1832 289 77 5 chr3 64096111 64096699 -95503084 + Lx7 LINE L1 6411 7040 -656 1 1074 396 0 0 0 chr3 64096835 64096879 -95502904 + (CAA)n Simple_repeat Simple_repeat 1 44 0 1 1074 3508 167 7 3 chr3 64096881 64097501 -95502282 - L1_Mus3 LINE L1 0 6638 6017 1 1074 2946 99 7 0 chr3 64097508 64097920 -95501863 + L1_Mus4 LINE L1 5587 6001 -635 1 1074 997 258 36 0 chr3 64098090 64098315 -95501468 + Lx5 LINE L1 6670 6902 -148 1 1074 2189 112 9 3 chr3 64098323 64098646 -95501137 + Lx3_Mus LINE L1 6145 6469 -540 1 1074 21182 97 7 4 chr3 64098641 64101741 -95498042 - L1Md_F LINE L1 -537 5346 2239 1 1074 4902 154 20 40 chr3 64101741 64102976 -95496807 - L1Md_F LINE L1 -4489 1394 178 1 1074 502 143 19 0 chr3 64103432 64103537 -95496246 + CT-rich Low_complexity Low_complexity 3 109 0 1 1074 248 137 20 0 chr3 64104168 64104219 -95495564 + CT-rich Low_complexity Low_complexity 2 53 0 1 1074 215 320 0 0 chr3 64104259 64104309 -95495474 - PB1D9 SINE Alu -47 73 24 1 1074 2375 73 0 0 chr3 64104354 64104667 -95495116 - L1Md_F2 LINE L1 -12 6570 6258 1 1074 597 64 0 0 chr3 64104762 64104840 -95494943 + (TC)n Simple_repeat Simple_repeat 1 78 0 1 1074 7056 82 6 0 chr3 64105736 64106676 -95493107 - L1_Mus1 LINE L1 -1 6566 5621 1 1074 4277 111 14 9 chr3 64106674 64107339 -95492444 + L1_Mus1 LINE L1 4976 5643 -240 1 1074 216 97 0 0 chr3 64107861 64107892 -95491891 + (T)n Simple_repeat Simple_repeat 1 31 0 1 1074 1145 55 0 7 chr3 64107892 64108040 -95491743 - B1_Mus2 SINE Alu 0 147 1 1 1074 23 33 0 0 chr3 64108497 64108527 -95491256 + AT_rich Low_complexity Low_complexity 1 30 0 1 1074 571 276 57 124 chr3 64110070 64110264 -95489519 + B3A SINE B2 1 181 -14 1 1074 21 0 0 0 chr3 64110635 64110656 -95489127 + AT_rich Low_complexity Low_complexity 1 21 0 1 1074 340 385 29 0 chr3 64111153 64111327 -95488456 - MER5A DNA MER1_type -9 180 2 1 1074 4226 120 0 27 chr3 64111657 64112460 -95487323 + L1_Mus3 LINE L1 620 1395 -4488 1 1074 25915 104 12 19 chr3 64112459 64116911 -95482872 + L1_Mus3 LINE L1 2239 6638 0 1 1074 256 332 75 66 chr3 64117079 64117292 -95482491 - MamRep137 DNA TcMar? -181 263 49 1 1074 696 153 0 0 chr3 64117359 64117485 -95482298 + GA-rich Low_complexity Low_complexity 2 127 0 1 1074 249 57 0 0 chr3 64117485 64117520 -95482263 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1 1074 696 153 0 0 chr3 64117520 64117537 -95482246 + polypurine Low_complexity Low_complexity 128 144 0 1 1074 195 42 0 0 chr3 64118373 64118397 -95481386 + (T)n Simple_repeat Simple_repeat 1 24 0 1 1074 507 95 14 0 chr3 64118399 64118473 -95481310 - ORR1A3-int LTR MaLR -857 1106 1032 1 1074 5820 56 1 1 chr3 64118474 64119206 -95480577 - L1Md_F3 LINE L1 0 6584 5853 1 1074 17131 61 2 47 chr3 64119207 64119322 -95480461 - L1Md_F LINE L1 -2316 3570 3460 1 1074 186 43 0 0 chr3 64119322 64119345 -95480438 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 1 1074 17131 61 2 47 chr3 64119345 64119422 -95480361 - L1_Mm LINE L1 -2427 3456 3456 1 1074 3887 63 0 4 chr3 64119422 64119915 -95479868 - L1Md_F2 LINE L1 -3 6579 6089 1 1074 220 69 0 0 chr3 64119915 64119944 -95479839 + B2_Mm2 SINE B2 14 42 -153 1 1074 17131 105 15 70 chr3 64119944 64123328 -95476455 - L1Md_F LINE L1 -2427 3459 66 1 1074 7654 114 8 12 chr3 64123329 64125015 -95474768 - L1_Mus2 LINE L1 -233 6333 4649 1 1074 2203 153 15 158 chr3 64125004 64125557 -95474226 - L1Md_F LINE L1 -2480 1337 927 1 1074 5223 124 58 12 chr3 64125557 64126419 -95473364 - RLTR13D6 LTR ERVK 0 902 1 1 1074 2203 181 42 16 chr3 64126419 64126716 -95473067 - L1Md_F LINE L1 -5593 926 611 1 1074 236 62 0 0 chr3 64126777 64126809 -95472974 - L1_Mur3 LINE L1 -494 5386 5355 1 1074 454 345 21 7 chr3 64126929 64127072 -95472711 - RSINE1 SINE B4 -15 150 6 1 1074 516 181 0 0 chr3 64127192 64127286 -95472497 + CT-rich Low_complexity Low_complexity 13 106 0 1 1074 696 24 0 0 chr3 64127286 64127368 -95472415 + (TTCC)n Simple_repeat Simple_repeat 3 84 0 1 1074 246 32 0 0 chr3 64127389 64127420 -95472363 + (TCTG)n Simple_repeat Simple_repeat 2 32 0 1 1074 306 226 164 31 chr3 64127431 64127559 -95472224 - B1_Mus1 SINE Alu -1 147 3 1 1074 204 149 0 0 chr3 64127764 64127811 -95471972 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 1074 583 190 77 8 chr3 64128378 64128495 -95471288 + B2_Mm2 SINE B2 1 125 -70 1 1074 13769 75 10 2 chr3 64128603 64129775 -95470008 - L1Md_F LINE L1 -2736 3147 1975 1 1074 216 67 0 0 chr3 64129775 64129805 -95469978 + (TTG)n Simple_repeat Simple_repeat 2 31 0 1 1074 13769 121 24 22 chr3 64129805 64131547 -95468236 - L1Md_F LINE L1 -3909 1974 273 1 1074 2344 201 58 74 chr3 64131663 64131766 -95468017 - RLTR20D LTR ERVK 0 568 466 1 1074 351 0 0 0 chr3 64131766 64131805 -95467978 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 1074 2344 201 58 74 chr3 64131805 64132269 -95467514 - RLTR20D LTR ERVK -103 465 11 1 1074 1045 85 0 0 chr3 64132703 64132844 -95466939 - B1_Mus1 SINE Alu 0 148 8 1 1074 501 329 43 14 chr3 64133081 64133288 -95466495 + Lx7 LINE L1 7096 7308 -388 1 1074 266 155 13 90 chr3 64133314 64133392 -95466391 + T-rich Low_complexity Low_complexity 2 73 0 1 1074 1053 75 7 33 chr3 64133420 64133571 -95466212 + B1_Mus2 SINE Alu 1 147 0 1 1074 636 81 0 0 chr3 64133576 64133663 -95466120 + (GAAA)n Simple_repeat Simple_repeat 2 88 0 1 1074 26 50 0 0 chr3 64134788 64134828 -95464955 + AT_rich Low_complexity Low_complexity 1 40 0 1 1074 222 194 0 0 chr3 64135924 64135996 -95463787 + T-rich Low_complexity Low_complexity 1 72 0 1 1074 5512 138 22 5 chr3 64137012 64137910 -95461873 - L1_Mm LINE L1 -516 5367 4454 1 1074 3394 97 0 8 chr3 64137892 64138362 -95461421 + L1_Mm LINE L1 5366 5831 -52 1 1074 633 94 10 0 chr3 64138363 64138459 -95461324 - L1_Mm LINE L1 -4324 1559 1463 1 1074 696 174 0 0 chr3 64138459 64138580 -95461203 - B2_Mm2 SINE B2 -73 122 2 1 1074 2496 188 37 6 chr3 64139237 64139822 -95459961 - RMER21A LTR ERV1 0 947 470 1 1074 1387 265 50 11 chr3 64139828 64140139 -95459644 + MTD LTR MaLR 21 345 -74 1 1074 233 29 0 29 chr3 64140139 64140174 -95459609 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 1 1074 1387 265 50 11 chr3 64140174 64140244 -95459539 + MTD LTR MaLR 346 417 -2 1 1074 1192 56 0 0 chr3 64141073 64141217 -95458566 + B1_Mm SINE Alu 2 145 -2 1 1074 302 42 0 41 chr3 64141217 64141266 -95458517 + (CAA)n Simple_repeat Simple_repeat 2 48 0 1 1074 221 167 0 0 chr3 64141266 64141308 -95458475 + A-rich Low_complexity Low_complexity 1 42 0 1 1074 299 65 22 0 chr3 64141586 64141632 -95458151 + (TTTA)n Simple_repeat Simple_repeat 4 50 0 1 1074 6382 164 16 2 chr3 64141634 64143242 -95456541 - L1_Mus4 LINE L1 -6 6630 4999 1 1074 932 106 8 0 chr3 64145320 64145452 -95454331 + B1_Mus1 SINE Alu 3 135 -13 1 1074 187 93 47 0 chr3 64145470 64145513 -95454270 + (CAAAA)n Simple_repeat Simple_repeat 1 45 0 1 1074 1705 221 87 82 chr3 64145515 64146067 -95453716 + L1_Mur2 LINE L1 1754 2308 -3569 1 1074 3629 179 4 7 chr3 64146064 64146749 -95453034 + L1_Mm LINE L1 4985 5667 -216 1 1074 2401 88 45 8 chr3 64146759 64147115 -95452668 - L1Md_F2 LINE L1 0 6582 6214 1 1074 3078 216 54 2 chr3 64147115 64148163 -95451620 + Lx5 LINE L1 5278 6394 -656 1 1074 23 33 0 0 chr3 64148163 64148193 -95451590 + AT_rich Low_complexity Low_complexity 1 30 0 1 1074 372 43 0 0 chr3 64148802 64148848 -95450935 + (TTTA)n Simple_repeat Simple_repeat 3 48 0 1 1074 3463 233 66 20 chr3 64148854 64149683 -95450100 - Lx5 LINE L1 0 7050 6184 1 1074 1136 191 29 0 chr3 64149694 64149979 -95449804 + L1_Mur2 LINE L1 1173 1465 -4412 1 1074 1778 226 54 59 chr3 64150228 64150806 -95448977 + RMER15 LTR ERVL 1 575 0 2 1074 1433 207 19 1 chr3 64150893 64151210 -95448573 - ORR1A4 LTR MaLR 0 394 43 2 1074 868 297 139 47 chr3 64152829 64153211 -95446572 - MTD LTR MaLR 0 419 3 2 1074 229 384 28 22 chr3 64153213 64153394 -95446389 + L1MC4a LINE L1 6730 6911 -1084 2 1074 296 308 0 42 chr3 64153730 64153825 -95445958 - B1F1 SINE Alu 0 149 59 2 1074 392 331 123 47 chr3 64153889 64154036 -95445747 + L1MC4a LINE L1 7261 7429 -453 2 1074 496 310 24 47 chr3 64154036 64154249 -95445534 + B3 SINE B2 3 210 -6 2 1074 392 331 123 47 chr3 64154249 64154354 -95445429 + L1MC4a LINE L1 7430 7524 -358 2 1074 502 333 9 28 chr3 64154354 64154570 -95445213 + B3 SINE B2 5 216 0 2 1074 392 331 123 47 chr3 64154570 64154633 -95445150 + L1MC4a LINE L1 7525 7600 -282 2 1074 977 66 0 160 chr3 64154723 64154904 -95444879 + L1_Mus1 LINE L1 6416 6567 0 2 1074 834 132 0 0 chr3 64154909 64155045 -95444738 + (GAAA)n Simple_repeat Simple_repeat 1 136 0 2 1074 30 69 0 0 chr3 64155558 64155616 -95444167 + AT_rich Low_complexity Low_complexity 1 58 0 2 1074 290 281 10 30 chr3 64158294 64158393 -95441390 + GA-rich Low_complexity Low_complexity 3 99 0 2 1074 615 39 0 0 chr3 64159015 64159093 -95440690 + (TTCC)n Simple_repeat Simple_repeat 3 80 0 2 1074 706 209 7 20 chr3 64159114 64159265 -95440518 - B1_Mur4 SINE Alu 0 150 2 2 1074 518 273 56 43 chr3 64160499 64160660 -95439123 - B4A SINE B4 0 292 130 2 1074 21 0 0 0 chr3 64160714 64160735 -95439048 + AT_rich Low_complexity Low_complexity 1 21 0 2 1074 453 268 46 26 chr3 64161091 64161244 -95438539 - MER5A1 DNA MER1_type -2 164 9 2 1074 22 80 0 0 chr3 64163563 64163613 -95436170 + AT_rich Low_complexity Low_complexity 1 50 0 2 1074 2896 98 5 0 chr3 64164546 64164944 -95434839 - MTB LTR MaLR 0 400 1 2 1074 778 267 126 37 chr3 64165734 64166115 -95433668 + MTD LTR MaLR 5 419 0 2 1074 2112 256 88 3 chr3 64166310 64166891 -95432892 + Lx7 LINE L1 6411 7040 -656 2 1074 479 139 0 0 chr3 64167340 64167419 -95432364 - B1_Mur4 SINE Alu -1 149 71 2 1074 1181 0 27 0 chr3 64167421 64167570 -95432213 + (TC)n Simple_repeat Simple_repeat 1 153 0 2 1074 312 262 85 52 chr3 64167607 64167760 -95432023 + MTD LTR MaLR 256 413 -6 2 1074 1048 231 11 25 chr3 64169960 64170244 -95429539 + L1VL1 LINE L1 16 295 -6127 2 1074 30689 89 3 18 chr3 64170232 64175785 -95423998 + L1Md_F LINE L1 98 5525 -358 2 1074 242 294 76 7 chr3 64175963 64176107 -95423676 + L1M5 LINE L1 3930 4083 -2063 2 1074 22 0 0 0 chr3 64176770 64176792 -95422991 + AT_rich Low_complexity Low_complexity 1 22 0 2 1074 437 349 46 29 chr3 64176795 64176969 -95422814 + B3A SINE B2 21 197 -1 2 1074 1856 104 14 17 chr3 64177654 64177947 -95421836 - L1Md_F2 LINE L1 0 6582 6291 2 1074 4653 64 12 0 chr3 64177947 64178541 -95421242 + L1Md_F2 LINE L1 5695 6295 -287 2 1074 409 379 29 0 chr3 64178637 64178811 -95420972 - MER5A DNA MER1_type -9 180 2 2 1074 235 235 29 29 chr3 64179884 64179954 -95419829 - L1_Mm LINE L1 -442 5441 5372 2 1074 226 0 0 56 chr3 64179954 64179990 -95419793 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 2 1074 2736 103 0 48 chr3 64180000 64180417 -95419366 - L1_Mus2 LINE L1 0 6566 6170 2 1074 429 346 25 56 chr3 64180512 64180674 -95419109 - RSINE1 SINE B4 -2 163 7 2 1074 14782 128 11 13 chr3 64180739 64183850 -95415933 + L1_Mus3 LINE L1 3365 6469 -169 2 1074 1085 185 5 10 chr3 64183850 64184047 -95415736 - RLTR22_Mur LTR ERVK -1652 196 1 2 1074 787 294 13 0 chr3 64184115 64184353 -95415430 - Lx9 LINE L1 -669 6975 6735 2 1074 206 156 22 0 chr3 64184381 64184426 -95415357 + T-rich Low_complexity Low_complexity 5 50 0 2 1074 1549 149 7 4 chr3 64184876 64185152 -95414631 - Lx2 LINE L1 0 6997 6721 2 1074 1964 156 15 0 chr3 64185153 64185487 -95414296 + Lx2 LINE L1 6042 6380 -617 2 1074 192 40 0 0 chr3 64185487 64185512 -95414271 + (TA)n Simple_repeat Simple_repeat 1 25 0 2 1074 251 385 39 0 chr3 64185797 64185901 -95413882 - MTE2a LTR MaLR -196 183 76 2 1074 387 0 0 0 chr3 64185915 64185958 -95413825 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 2 1074 1193 169 61 57 chr3 64185958 64186222 -95413561 - Lx3A LINE L1 -13 6968 6704 2 1074 227 206 270 0 chr3 64186341 64186404 -95413379 - MTE2a LTR MaLR -297 82 3 2 1074 7736 117 25 59 chr3 64186405 64187751 -95412032 - RLTR22_Mur LTR ERVK 0 1848 549 2 1074 288 0 0 0 chr3 64187751 64187783 -95412000 + (TA)n Simple_repeat Simple_repeat 2 33 0 2 1074 318 134 0 0 chr3 64187785 64187852 -95411931 + (T)n Simple_repeat Simple_repeat 1 67 0 2 1074 1088 108 0 0 chr3 64187852 64188000 -95411783 - B1_Mus1 SINE Alu 0 148 1 2 1074 230 143 20 0 chr3 64188188 64188237 -95411546 + (TCTA)n Simple_repeat Simple_repeat 3 52 0 2 1074 5601 78 3 15 chr3 64188785 64188804 -95410979 - L1Md_F2 LINE L1 0 6582 6570 2 1074 228 35 0 0 chr3 64188804 64188833 -95410950 + (TTAA)n Simple_repeat Simple_repeat 3 31 0 2 1074 5601 78 3 15 chr3 64188833 64189591 -95410192 - L1Md_F2 LINE L1 -13 6569 5815 2 1074 359 125 31 0 chr3 64189921 64189985 -95409798 - Lx3A LINE L1 -759 5127 5062 2 1074 8450 116 51 21 chr3 64189970 64190399 -95409384 + Lx3A LINE L1 5136 5597 -289 2 1074 2876 100 5 12 chr3 64190399 64190823 -95408960 - BGLII LTR ERVK 0 421 1 2 1074 8450 134 16 17 chr3 64190823 64192201 -95407582 + Lx3A LINE L1 5595 6975 -6 2 1074 217 167 0 53 chr3 64195719 64195776 -95404007 + A-rich Low_complexity Low_complexity 3 56 0 2 1074 3387 201 35 221 chr3 64195951 64196843 -95402940 + Lx5 LINE L1 2957 3485 -2395 2 1074 441 50 0 0 chr3 64196843 64196903 -95402880 + (GAAA)n Simple_repeat Simple_repeat 2 61 0 2 1074 3646 195 56 16 chr3 64196903 64197779 -95402004 + Lx5 LINE L1 3486 4396 -1484 2 1074 221 219 0 0 chr3 64197785 64197826 -95401957 + CT-rich Low_complexity Low_complexity 4 44 0 2 1074 504 208 1 1 chr3 64197828 64197962 -95401821 - L1_Mur3 LINE L1 -420 3494 3357 2 1074 288 0 0 0 chr3 64197962 64197994 -95401789 + (TA)n Simple_repeat Simple_repeat 2 33 0 2 1074 399 238 24 8 chr3 64198035 64198158 -95401625 + Lx5 LINE L1 4421 4545 -1335 2 1074 561 236 19 13 chr3 64198142 64198301 -95401482 + Lx5 LINE L1 5622 5781 -1269 2 1074 884 261 12 16 chr3 64198304 64198546 -95401237 + Lx2B LINE L1 6756 6996 -4 2 1074 1699 279 77 11 chr3 64198541 64199229 -95400554 + Lx5 LINE L1 5778 6736 -724 2 1074 1489 169 4 0 chr3 64199255 64199534 -95400249 - L1_Mur2 LINE L1 -1716 4161 3882 2 1074 8816 190 18 2 chr3 64199533 64200077 -95399706 + Lx2 LINE L1 4081 4626 -1251 2 1074 204 67 0 0 chr3 64200077 64200107 -95399676 + (CAA)n Simple_repeat Simple_repeat 2 31 0 2 1074 8816 152 20 3 chr3 64200107 64201938 -95397845 + Lx2 LINE L1 4627 6502 -495 2 1074 471 254 68 118 chr3 64202660 64202923 -95396860 + MER33 DNA MER1_type 5 254 -70 2 1074 18448 109 18 12 chr3 64203193 64206785 -95392998 + L1Md_F2 LINE L1 245 3864 -2019 2 1074 4379 83 22 2 chr3 64206786 64207379 -95392404 + L1Md_F2 LINE L1 5966 6570 -12 2 1074 2089 226 70 56 chr3 64207393 64207951 -95391832 + RMER15 LTR ERVL 1 566 -9 2 1074 960 192 8 19 chr3 64212568 64212835 -95386948 + GA-rich Low_complexity Low_complexity 1 264 0 2 1074 658 236 7 20 chr3 64213507 64213654 -95386129 - B1_Mur4 SINE Alu -4 146 2 2 1074 1139 199 257 44 chr3 64214355 64214517 -95385266 - L1_Mur2 LINE L1 -3572 2305 2061 2 1074 567 0 0 0 chr3 64214517 64214580 -95385203 + (TC)n Simple_repeat Simple_repeat 2 64 0 2 1074 1139 199 257 44 chr3 64214580 64214869 -95384914 - L1_Mur2 LINE L1 -3817 2060 1758 2 1074 291 204 0 0 chr3 64214845 64214899 -95384884 + Lx5 LINE L1 6854 6907 -143 2 1074 239 261 100 22 chr3 64214946 64215036 -95384747 + Lx5 LINE L1 6525 6621 -429 2 1074 941 277 40 22 chr3 64215037 64215314 -95384469 + Lx5 LINE L1 6754 7035 -15 2 1074 1043 58 0 7 chr3 64215316 64215456 -95384327 + (TAGA)n Simple_repeat Simple_repeat 4 142 0 2 1074 25 65 0 0 chr3 64216285 64216331 -95383452 + AT_rich Low_complexity Low_complexity 1 46 0 2 1074 367 308 38 0 chr3 64217022 64217155 -95382628 - MER5A1 DNA MER1_type -4 162 25 2 1074 671 44 0 11 chr3 64217496 64217588 -95382195 + (CA)n Simple_repeat Simple_repeat 1 91 0 2 1074 687 12 0 0 chr3 64218337 64218417 -95381366 + (CTGTG)n Simple_repeat Simple_repeat 5 84 0 2 1074 396 0 0 0 chr3 64219869 64219913 -95379870 + (TAAA)n Simple_repeat Simple_repeat 3 46 0 2 1074 1232 224 52 110 chr3 64220019 64220420 -95379363 + Lx5 LINE L1 6670 7047 -3 2 1074 24 32 0 0 chr3 64220447 64220478 -95379305 + AT_rich Low_complexity Low_complexity 1 31 0 2 1074 210 143 0 0 chr3 64220604 64220639 -95379144 + (A)n Simple_repeat Simple_repeat 1 35 0 2 1074 340 105 0 0 chr3 64223267 64223324 -95376459 - L1_Mm LINE L1 -4395 1488 1432 2 1074 6336 68 12 10 chr3 64223327 64224189 -95375594 + L1Md_F2 LINE L1 5720 6582 0 2 134 1029 280 99 30 chr3 64225019 64225295 -95374488 + MTD LTR MaLR 22 323 -96 2 1075 1863 80 8 4 chr3 64225295 64225559 -95374224 - L1_Mus2 LINE L1 0 6566 6302 2 1075 1029 280 99 30 chr3 64225559 64225654 -95374129 + MTD LTR MaLR 324 419 0 2 1075 2074 233 86 11 chr3 64225868 64226424 -95373359 + Lx7 LINE L1 6437 7034 -662 2 1075 519 56 0 0 chr3 64226836 64226907 -95372876 + (GTTTG)n Simple_repeat Simple_repeat 4 74 0 2 1075 453 194 2 36 chr3 64226907 64227003 -95372780 - B1_Mur4 SINE Alu -8 142 47 2 1075 399 40 0 0 chr3 64227003 64227053 -95372730 - L1Md_F2 LINE L1 -393 6189 6140 2 1075 2417 86 5 13 chr3 64227051 64227422 -95372361 + L1Md_F2 LINE L1 6188 6594 -44 2 1075 382 146 24 0 chr3 64227514 64227596 -95372187 + CT-rich Low_complexity Low_complexity 6 89 0 2 1075 468 51 0 0 chr3 64227604 64227663 -95372120 + (TG)n Simple_repeat Simple_repeat 2 60 0 2 1075 27 0 0 0 chr3 64227850 64227877 -95371906 + AT_rich Low_complexity Low_complexity 1 27 0 2 1075 190 312 102 34 chr3 64227883 64228059 -95371724 - MIRb SINE MIR -5 263 76 2 1075 2340 142 52 29 chr3 64228807 64229250 -95370533 + Lx LINE L1 6195 6647 -7 2 1075 255 192 0 0 chr3 64229321 64229394 -95370389 + (TG)n Simple_repeat Simple_repeat 1 73 0 2 1075 4343 107 2 10 chr3 64229656 64230279 -95369504 - L1_Mus2 LINE L1 -1 6565 5948 2 1075 480 334 120 19 chr3 64230326 64230574 -95369209 - MTE2b LTR MaLR -110 269 1 2 1075 1499 224 90 3 chr3 64232006 64232373 -95367410 + MTD LTR MaLR 19 417 -2 2 1075 1694 196 9 0 chr3 64232427 64232744 -95367039 - RLTR46 LTR ERVK 0 320 1 2 1075 19938 125 27 10 chr3 64232744 64236149 -95363634 - MMERVK10C-int LTR ERVK -353 7228 4125 2 1075 2501 95 0 3 chr3 64236148 64236517 -95363266 - MMERVK10C-int LTR ERVK -3662 3919 3552 2 1075 1598 75 304 0 chr3 64236513 64236771 -95363012 - MMERVK10C-int LTR ERVK -4515 3066 2730 2 1075 4169 75 0 7 chr3 64236769 64237334 -95362449 - MMERVK10C-int LTR ERVK -5136 2445 1885 2 1075 341 188 138 0 chr3 64237325 64237405 -95362378 - MMERVK10C-int LTR ERVK -5109 1028 938 2 1075 1476 178 197 32 chr3 64237410 64237846 -95361937 - MMERVK10C-int LTR ERVK -4587 819 312 2 1075 608 185 69 8 chr3 64237835 64237966 -95361817 - MMERVK10C-int LTR ERVK -6906 675 537 2 1075 2066 260 19 36 chr3 64237961 64238648 -95361135 - IAPEY3-int LTR ERVK -6760 920 246 3 1075 456 117 0 0 chr3 64240002 64240079 -95359704 + (TCTA)n Simple_repeat Simple_repeat 1 77 0 3 1075 405 0 0 0 chr3 64241790 64241835 -95357948 + (CA)n Simple_repeat Simple_repeat 2 46 0 3 1075 226 172 145 65 chr3 64242888 64242950 -95356833 + B1F SINE Alu 83 149 0 3 1075 5656 52 5 11 chr3 64242989 64243726 -95356057 - L1Md_F3 LINE L1 -1 6583 5851 3 1075 1336 207 8 0 chr3 64243727 64243978 -95355805 - RLTR46 LTR ERVK -67 253 1 3 1075 420 123 0 0 chr3 64245722 64245795 -95353988 + (TCTA)n Simple_repeat Simple_repeat 1 73 0 3 1075 226 172 145 65 chr3 64248579 64248641 -95351142 + B1F SINE Alu 83 149 0 3 1075 31 0 0 24 chr3 64248665 64248695 -95351088 + AT_rich Low_complexity Low_complexity 1 30 0 3 1075 2764 54 17 0 chr3 64248695 64249048 -95350735 - L1Md_F3 LINE L1 -17 6567 6209 3 1075 31 0 0 24 chr3 64249048 64249059 -95350724 + AT_rich Low_complexity Low_complexity 1 11 0 3 1075 1217 211 76 12 chr3 64249543 64250157 -95349626 + L1_Mur3 LINE L1 914 1570 -4307 3 1075 3212 196 39 28 chr3 64250153 64250273 -95349510 + L1_Mur2 LINE L1 69 184 -6528 3 1075 6877 73 1 3 chr3 64250273 64251176 -95348607 + L1Md_F2 LINE L1 5670 6570 -12 3 1075 3212 196 39 28 chr3 64251176 64251214 -95348569 + L1_Mur2 LINE L1 185 221 -6491 3 1075 462 49 0 0 chr3 64251214 64251275 -95348508 + (CA)n Simple_repeat Simple_repeat 1 61 0 3 1075 3212 196 39 28 chr3 64251275 64251840 -95347943 + L1_Mur2 LINE L1 222 801 -5911 3 1075 183 42 0 0 chr3 64252054 64252078 -95347705 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 3 1075 219 36 0 0 chr3 64252218 64252246 -95347537 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 3 1075 276 330 88 0 chr3 64252401 64252492 -95347291 - RMER30 DNA MER1_type -5 197 99 3 1075 266 252 68 98 chr3 64252415 64252536 -95347247 + Charlie12 DNA MER1_type 19 137 -2736 3 1075 504 0 0 0 chr3 64252536 64252592 -95347191 + (TTTA)n Simple_repeat Simple_repeat 3 58 0 3 1075 1177 89 0 0 chr3 64252602 64252750 -95347033 - B2_Mm2 SINE B2 -36 159 2 3 1075 495 255 78 11 chr3 64253336 64253472 -95346311 + B3A SINE B2 2 145 -48 3 1075 587 261 52 52 chr3 64253945 64254257 -95345526 - L1MA6 LINE L1 -249 6051 5730 3 1075 549 320 0 0 chr3 64255077 64255227 -95344556 + RSINE1 SINE B4 2 151 -14 3 1075 1577 249 48 2 chr3 64255251 64255650 -95344133 + MTC LTR MaLR 3 419 -2 3 1075 498 17 0 0 chr3 64255710 64255769 -95344014 + (TGG)n Simple_repeat Simple_repeat 1 59 0 3 1075 1213 88 0 0 chr3 64256028 64256188 -95343595 + B2_Mm2 SINE B2 1 160 -35 3 1075 237 333 44 18 chr3 64256253 64256366 -95343417 - PB1D7 SINE Alu -1 119 4 3 1075 38113 19 3 6 chr3 64256936 64263103 -95336680 - L1Md_A LINE L1 0 6582 440 3 1075 219 36 0 0 chr3 64266189 64266217 -95333566 + (TTTTA)n Simple_repeat Simple_repeat 2 29 0 3 1075 408 191 0 0 chr3 64266226 64266310 -95333473 + (CA)n Simple_repeat Simple_repeat 2 85 0 3 1075 1219 56 6 12 chr3 64266310 64266472 -95333311 - B2_Mm2 SINE B2 -30 165 5 3 1075 241 271 84 14 chr3 64266807 64266878 -95332905 - ID_B1 SINE B4 -15 209 134 3 1075 256 295 50 25 chr3 64266890 64266970 -95332813 - ID SINE ID -138 86 5 3 1075 21922 67 30 6 chr3 64267158 64270865 -95328918 - L1Md_F2 LINE L1 -2 6582 2789 3 1075 6810 66 4 1 chr3 64270864 64271815 -95327968 + L1_Mm LINE L1 3640 4593 -1290 3 1075 3808 112 2 5 chr3 64271835 64272392 -95327391 + L1_Mus2 LINE L1 6010 6564 -2 3 1075 350 338 57 25 chr3 64272825 64272983 -95326800 - MER5A DNA MER1_type -25 164 2 3 1075 392 336 38 15 chr3 64274287 64274420 -95325363 - RSINE1 SINE B4 -19 146 11 3 1075 317 24 0 23 chr3 64274547 64274590 -95325193 + (TTTC)n Simple_repeat Simple_repeat 1 42 0 3 1075 812 164 6 17 chr3 64274591 64274771 -95325012 + CT-rich Low_complexity Low_complexity 3 180 0 3 1075 337 219 192 16 chr3 64274828 64274953 -95324830 - B1_Mus1 SINE Alu 0 148 2 3 1075 236 178 0 0 chr3 64275148 64275193 -95324590 + (TG)n Simple_repeat Simple_repeat 2 46 0 3 1075 363 23 0 0 chr3 64275332 64275376 -95324407 + (TA)n Simple_repeat Simple_repeat 1 44 0 3 1075 288 0 0 0 chr3 64275376 64275407 -95324376 + (GA)n Simple_repeat Simple_repeat 2 33 0 3 1075 4882 143 19 14 chr3 64275793 64277026 -95322757 - Lx5 LINE L1 -522 6528 5285 3 1075 6743 129 44 40 chr3 64277033 64278835 -95320948 - L1_Mus2 LINE L1 -3 6563 4757 3 1075 7569 85 0 1 chr3 64278844 64279919 -95319864 + L1Md_F2 LINE L1 4511 5584 -299 3 1075 7825 53 3 4 chr3 64279922 64280903 -95318880 + L1Md_F2 LINE L1 5588 6567 -15 3 1075 26 50 0 0 chr3 64281276 64281316 -95318467 + AT_rich Low_complexity Low_complexity 1 40 0 3 1075 2747 126 2 2 chr3 64283478 64283924 -95315859 - L1_Mm LINE L1 -516 5367 4922 3 1075 2547 48 0 0 chr3 64283926 64284258 -95315525 - L1Md_F3 LINE L1 -414 6170 5839 3 1075 3114 49 3 8 chr3 64284258 64284648 -95315135 + L1Md_F3 LINE L1 6185 6572 -12 3 1075 29 60 0 0 chr3 64284648 64284698 -95315085 + AT_rich Low_complexity Low_complexity 1 50 0 3 1075 227 278 0 0 chr3 64284782 64284836 -95314947 + B1F SINE Alu 91 144 -5 3 1075 2646 138 36 0 chr3 64285172 64285620 -95314163 - L1_Mm LINE L1 -945 4938 4475 3 1075 6886 92 3 2 chr3 64285630 64286825 -95312958 + L1_Mus2 LINE L1 5372 6566 0 3 1075 7432 36 0 1 chr3 64286949 64287872 -95311911 - L1Md_T LINE L1 -2 6580 5659 3 1075 7703 16 12 0 chr3 64287870 64288802 -95310981 + L1Md_T LINE L1 4695 5637 -246 3 1075 489 285 91 20 chr3 64288925 64289122 -95310661 + B3 SINE B2 5 215 -1 3 1075 1070 158 27 0 chr3 64289459 64289643 -95310140 - B2_Mm2 SINE B2 -6 189 1 3 1075 568 64 0 128 chr3 64290172 64290297 -95309486 + L1Md_F2 LINE L1 6462 6570 -12 3 1075 2417 203 43 3 chr3 64290492 64291010 -95308773 - RMER21A LTR ERV1 -7 940 470 3 1075 1351 252 50 48 chr3 64291016 64291333 -95308450 + MTD LTR MaLR 21 347 -72 3 1075 374 0 22 0 chr3 64291333 64291379 -95308404 + (CAA)n Simple_repeat Simple_repeat 2 48 0 3 1075 1351 252 50 48 chr3 64291379 64291457 -95308326 + MTD LTR MaLR 348 417 -2 3 1075 189 0 0 0 chr3 64292014 64292035 -95307748 + (A)n Simple_repeat Simple_repeat 1 21 0 3 1075 21 0 0 0 chr3 64292160 64292181 -95307602 + AT_rich Low_complexity Low_complexity 1 21 0 3 1075 1193 68 0 0 chr3 64292309 64292455 -95307328 + B1_Mm SINE Alu 2 147 0 3 1075 495 96 0 0 chr3 64292470 64292553 -95307230 + (A)n Simple_repeat Simple_repeat 1 83 0 3 1075 248 77 0 25 chr3 64292829 64292869 -95306914 + (TTTA)n Simple_repeat Simple_repeat 4 42 0 3 1075 6187 157 7 3 chr3 64292871 64294486 -95305297 - L1_Mus4 LINE L1 -6 6630 5009 3 1075 965 118 7 0 chr3 64296567 64296702 -95303081 + B1_Mus1 SINE Alu 3 138 -10 3 1075 1503 228 2 87 chr3 64296818 64297313 -95302470 + L1_Mur2 LINE L1 1856 2308 -3569 3 1075 3537 178 4 6 chr3 64297310 64297994 -95301789 + L1_Mm LINE L1 4985 5667 -216 3 1075 2562 73 39 8 chr3 64298000 64298358 -95301425 - L1Md_F2 LINE L1 0 6582 6214 3 1075 2591 216 55 5 chr3 64298358 64299410 -95300373 + Lx5 LINE L1 5278 6394 -656 3 1075 390 42 0 0 chr3 64300049 64300097 -95299686 + (TTTA)n Simple_repeat Simple_repeat 3 50 0 3 1075 2962 241 70 21 chr3 64300103 64300929 -95298854 - Lx5 LINE L1 0 7050 6184 3 1075 1176 185 12 0 chr3 64300951 64301226 -95298557 + L1_Mur2 LINE L1 1186 1463 -4414 3 1075 1549 251 56 56 chr3 64301477 64302052 -95297731 + RMER15 LTR ERVL 1 575 0 3 1075 1209 240 12 61 chr3 64302139 64302485 -95297298 - ORR1A4 LTR MaLR 0 329 1 3 1075 209 305 0 0 chr3 64303309 64303368 -95296415 + GA-rich Low_complexity Low_complexity 6 64 0 3 1075 949 294 98 50 chr3 64304057 64304455 -95295328 - MTD LTR MaLR 0 419 3 3 1075 241 364 33 28 chr3 64304457 64304638 -95295145 + L1MC4a LINE L1 6730 6911 -1084 3 1075 334 304 28 38 chr3 64304973 64305079 -95294704 - B1F1 SINE Alu 0 149 45 3 1075 334 329 107 63 chr3 64305132 64305279 -95294504 + L1MC4a LINE L1 7261 7429 -453 3 1075 556 341 15 0 chr3 64305279 64305484 -95294299 + B3 SINE B2 3 210 -6 3 1075 334 329 107 63 chr3 64305484 64305589 -95294194 + L1MC4a LINE L1 7430 7524 -358 3 1075 553 348 24 14 chr3 64305589 64305799 -95293984 + B3 SINE B2 5 216 0 3 1075 1090 82 0 0 chr3 64305970 64306117 -95293666 + L1_Mus1 LINE L1 6415 6561 -6 3 1075 669 197 7 0 chr3 64306129 64306407 -95293376 + GA-rich Low_complexity Low_complexity 1 279 0 3 1075 419 89 0 0 chr3 64306407 64306463 -95293320 + (GA)n Simple_repeat Simple_repeat 2 57 0 3 1075 1025 145 6 0 chr3 64306463 64306642 -95293141 + GA-rich Low_complexity Low_complexity 1 180 0 3 1075 30 69 0 0 chr3 64307149 64307207 -95292576 + AT_rich Low_complexity Low_complexity 1 58 0 3 1075 3127 71 2 0 chr3 64308659 64309067 -95290716 - L1Md_F2 LINE L1 0 6582 6174 3 1075 276 320 10 10 chr3 64310301 64310399 -95289384 + GA-rich Low_complexity Low_complexity 2 99 0 3 1075 708 64 0 0 chr3 64311024 64311118 -95288665 + (TTCC)n Simple_repeat Simple_repeat 3 96 0 3 1075 607 230 7 26 chr3 64311130 64311282 -95288501 - B1_Mur4 SINE Alu 0 150 2 3 1075 506 279 56 43 chr3 64312508 64312669 -95287114 - B4A SINE B4 0 292 130 3 1075 22 0 0 0 chr3 64312722 64312744 -95287039 + AT_rich Low_complexity Low_complexity 1 22 0 3 1075 430 269 38 6 chr3 64313097 64313254 -95286529 - MER5A1 DNA MER1_type -2 164 3 3 1075 230 308 0 0 chr3 64314261 64314313 -95285470 - tRNA-Ala-GCY_ tRNA tRNA -23 52 1 3 1075 24 77 0 0 chr3 64315565 64315617 -95284166 + AT_rich Low_complexity Low_complexity 1 52 0 3 1075 3052 85 2 0 chr3 64316548 64316947 -95282836 - MTB LTR MaLR 0 400 1 3 1075 919 279 127 32 chr3 64317743 64317999 -95281784 + MTD LTR MaLR 1 288 -131 3 1075 4416 56 5 11 chr3 64317999 64318573 -95281210 - L1Md_F3 LINE L1 -14 6570 6000 3 1075 919 260 48 40 chr3 64318573 64318701 -95281082 + MTD LTR MaLR 287 405 -14 3 1075 1987 256 83 3 chr3 64318887 64319480 -95280303 + Lx7 LINE L1 6401 7040 -656 4 1075 458 177 0 0 chr3 64319925 64320004 -95279779 - B1_Mur4 SINE Alu -1 149 71 4 1075 1062 74 28 6 chr3 64320010 64320186 -95279597 + (TC)n Simple_repeat Simple_repeat 1 180 0 4 1075 203 162 0 0 chr3 64320205 64320242 -95279541 + CT-rich Low_complexity Low_complexity 2 38 0 4 1075 272 282 4 0 chr3 64320263 64320324 -95279459 - B1F2 SINE Alu -76 73 11 4 1075 405 0 0 0 chr3 64322692 64322737 -95277046 + (TC)n Simple_repeat Simple_repeat 1 45 0 4 1075 294 73 0 0 chr3 64322739 64322780 -95277003 + (TG)n Simple_repeat Simple_repeat 2 42 0 4 1075 21 57 0 0 chr3 64322968 64323003 -95276780 + AT_rich Low_complexity Low_complexity 1 35 0 4 1075 423 0 0 0 chr3 64323978 64324025 -95275758 + (TG)n Simple_repeat Simple_repeat 2 48 0 4 1075 21 36 0 0 chr3 64325251 64325279 -95274504 + AT_rich Low_complexity Low_complexity 1 28 0 4 1075 23 0 0 0 chr3 64325311 64325334 -95274449 + AT_rich Low_complexity Low_complexity 1 23 0 4 1075 415 361 46 34 chr3 64325337 64325512 -95274271 + B3A SINE B2 21 197 -1 4 1075 252 386 69 6 chr3 64325997 64326156 -95273627 - MER58A DNA MER1_type -42 182 14 4 1075 1936 99 0 36 chr3 64326188 64326491 -95273292 - L1Md_F2 LINE L1 0 6582 6291 4 1075 4424 59 19 0 chr3 64326491 64327081 -95272702 + L1Md_F2 LINE L1 5695 6295 -287 4 1075 316 0 0 43 chr3 64328501 64328547 -95271236 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 4 1075 2737 106 0 48 chr3 64328557 64328974 -95270809 - L1_Mus2 LINE L1 0 6566 6170 4 1075 22 70 0 0 chr3 64328996 64329039 -95270744 + AT_rich Low_complexity Low_complexity 1 43 0 4 1075 433 331 31 49 chr3 64329068 64329230 -95270553 - RSINE1 SINE B4 0 165 7 4 1075 13913 132 8 9 chr3 64329295 64332398 -95267385 + L1_Mus3 LINE L1 3365 6469 -169 4 1075 1029 182 21 10 chr3 64332398 64332592 -95267191 - RLTR22_Mur LTR ERVK -1652 196 1 4 1075 727 296 12 0 chr3 64332658 64332898 -95266885 - Lx9 LINE L1 -667 6977 6735 4 1075 1696 138 4 0 chr3 64333391 64333667 -95266116 - Lx2 LINE L1 0 6997 6721 4 1075 1776 166 15 0 chr3 64333668 64334000 -95265783 + Lx2 LINE L1 6042 6378 -619 4 1075 275 375 39 0 chr3 64334312 64334416 -95265367 - MTE2a LTR MaLR -196 183 76 4 1075 381 43 0 0 chr3 64334430 64334477 -95265306 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 4 1075 965 196 55 88 chr3 64334477 64334751 -95265032 - Lx3A LINE L1 -13 6968 6704 4 1075 22 0 0 0 chr3 64334767 64334789 -95264994 + AT_rich Low_complexity Low_complexity 1 22 0 4 1075 247 25 50 0 chr3 64334789 64334829 -95264954 + (TA)n Simple_repeat Simple_repeat 2 43 0 4 1075 3285 5 0 0 chr3 64334931 64335299 -95264484 - L1Md_T LINE L1 0 6582 6215 4 1075 7670 111 36 61 chr3 64335367 64336705 -95263078 - RLTR22_Mur LTR ERVK 0 1848 545 4 1075 467 43 0 28 chr3 64336723 64336794 -95262989 + (TTTTG)n Simple_repeat Simple_repeat 2 70 0 4 1075 1077 94 0 0 chr3 64336794 64336932 -95262851 - B1_Mus1 SINE Alu -10 138 1 4 1075 200 122 24 0 chr3 64337117 64337158 -95262625 + (TCTA)n Simple_repeat Simple_repeat 3 44 0 4 1075 33 0 0 0 chr3 64337701 64337734 -95262049 + AT_rich Low_complexity Low_complexity 1 33 0 4 1075 5755 76 1 4 chr3 64337734 64338497 -95261286 - L1Md_F2 LINE L1 -2 6580 5820 4 1075 357 109 31 0 chr3 64338835 64338899 -95260884 - Lx3A LINE L1 -759 5127 5062 4 1075 4549 115 16 19 chr3 64338884 64339344 -95260439 + Lx3A LINE L1 5136 5600 -286 4 1075 2819 110 5 12 chr3 64339344 64339768 -95260015 - BGLII LTR ERVK 0 421 1 4 1075 7990 131 18 9 chr3 64339768 64341132 -95258651 + Lx3A LINE L1 5593 6968 -13 4 1075 279 0 0 0 chr3 64341132 64341163 -95258620 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 4 1075 22 70 0 0 chr3 64342578 64342621 -95257162 + AT_rich Low_complexity Low_complexity 1 43 0 4 1075 217 167 0 53 chr3 64344656 64344713 -95255070 + A-rich Low_complexity Low_complexity 3 56 0 4 1075 1889 200 25 13 chr3 64344888 64345410 -95254373 + Lx5 LINE L1 2957 3484 -2396 4 1075 330 152 0 0 chr3 64345412 64345471 -95254312 + GA-rich Low_complexity Low_complexity 3 61 0 4 1075 204 111 0 0 chr3 64345476 64345512 -95254271 + (GA)n Simple_repeat Simple_repeat 1 36 0 4 1075 331 269 148 7 chr3 64345513 64345648 -95254135 + HAL1-3A_ME LINE L1 2285 2438 -420 4 1075 734 130 0 8 chr3 64345650 64345782 -95254001 + (GAAA)n Simple_repeat Simple_repeat 3 133 0 4 1075 3454 179 81 21 chr3 64345782 64346650 -95253133 + Lx5 LINE L1 3476 4395 -1482 4 1075 195 100 0 0 chr3 64346663 64346693 -95253090 + (TCCC)n Simple_repeat Simple_repeat 4 33 0 4 1075 450 212 2 5 chr3 64346695 64346827 -95252956 - L1_Mur3 LINE L1 -420 3494 3361 4 1075 342 0 0 0 chr3 64346828 64346866 -95252917 + (TAGA)n Simple_repeat Simple_repeat 1 38 0 4 1075 405 223 25 0 chr3 64346910 64347031 -95252752 + Lx5 LINE L1 4422 4545 -1335 4 1075 556 238 12 1 chr3 64347014 64347174 -95252609 + Lx5 LINE L1 5621 5776 -104 4 1075 703 264 44 16 chr3 64347170 64347420 -95252363 + Lx2B LINE L1 6742 6998 -2 4 1075 1370 296 85 12 chr3 64347415 64348101 -95251682 + Lx5 LINE L1 5783 6736 -724 4 1075 1596 143 0 0 chr3 64348127 64348407 -95251376 - L1_Mur2 LINE L1 -1716 4161 3882 4 1075 8336 186 22 3 chr3 64348406 64348950 -95250833 + Lx2 LINE L1 4081 4630 -1247 4 1075 197 0 0 67 chr3 64348950 64348980 -95250803 + (CAA)n Simple_repeat Simple_repeat 2 29 0 4 1075 8336 160 23 2 chr3 64348980 64350804 -95248979 + Lx2 LINE L1 4631 6502 -495 4 1075 28 0 0 0 chr3 64351094 64351122 -95248661 + AT_rich Low_complexity Low_complexity 1 28 0 4 1075 406 268 73 115 chr3 64351536 64351797 -95247986 + MER33 DNA MER1_type 5 254 -70 4 134 29447 102 14 12 chr3 64352067 64357401 -95242382 + L1Md_F2 LINE L1 245 5586 -297 4 1076 7870 45 16 5 chr3 64357401 64358382 -95241401 + L1Md_F2 LINE L1 5587 6578 -4 4 1076 204 97 0 0 chr3 64362331 64362362 -95237421 + (GAAA)n Simple_repeat Simple_repeat 4 34 0 4 1076 788 206 0 11 chr3 64362364 64362546 -95237237 + GA-rich Low_complexity Low_complexity 1 180 0 4 1076 480 35 0 0 chr3 64362547 64362605 -95237178 + (GGAA)n Simple_repeat Simple_repeat 4 61 0 4 1076 673 244 0 22 chr3 64363268 64363406 -95236377 - B1_Mur4 SINE Alu -4 146 12 4 1076 894 211 273 19 chr3 64364114 64364279 -95235504 - L1_Mur2 LINE L1 -3572 2305 2055 4 1076 590 0 14 0 chr3 64364279 64364349 -95235434 + (TC)n Simple_repeat Simple_repeat 2 72 0 4 1076 369 0 0 0 chr3 64364349 64364389 -95235394 + (TG)n Simple_repeat Simple_repeat 2 42 0 4 1076 894 211 273 19 chr3 64364389 64364632 -95235151 - L1_Mur2 LINE L1 -3823 2054 1793 4 1076 278 204 0 0 chr3 64364637 64364691 -95235092 + Lx5 LINE L1 6854 6907 -143 4 1076 1327 272 87 17 chr3 64364745 64365216 -95234567 + Lx5 LINE L1 6532 7035 -15 4 1076 423 68 0 0 chr3 64365240 64365299 -95234484 + (GAAA)n Simple_repeat Simple_repeat 4 62 0 4 1076 23 86 0 0 chr3 64366180 64366238 -95233545 + AT_rich Low_complexity Low_complexity 1 58 0 4 1076 585 129 0 0 chr3 64366238 64366331 -95233452 + (TA)n Simple_repeat Simple_repeat 2 94 0 4 1076 357 303 45 0 chr3 64367019 64367151 -95232632 - MER5A1 DNA MER1_type -4 162 25 4 1076 470 17 0 17 chr3 64367536 64367596 -95232187 + (CA)n Simple_repeat Simple_repeat 2 60 0 4 1076 25 65 0 0 chr3 64367887 64367933 -95231850 + AT_rich Low_complexity Low_complexity 1 46 0 4 1076 360 0 0 0 chr3 64368379 64368419 -95231364 + (CTGTG)n Simple_repeat Simple_repeat 5 44 0 4 1076 447 19 0 0 chr3 64369871 64369923 -95229860 + (TAAA)n Simple_repeat Simple_repeat 3 54 0 4 1076 1060 245 47 105 chr3 64370029 64370430 -95229353 + Lx5 LINE L1 6670 7047 -3 4 1076 24 32 0 0 chr3 64370457 64370488 -95229295 + AT_rich Low_complexity Low_complexity 1 31 0 4 1076 396 0 0 0 chr3 64370739 64370783 -95229000 + (A)n Simple_repeat Simple_repeat 1 44 0 4 1076 279 71 0 0 chr3 64372402 64372444 -95227339 + (TTGTG)n Simple_repeat Simple_repeat 4 45 0 4 1076 359 88 0 0 chr3 64373313 64373370 -95226413 - L1_Mm LINE L1 -4395 1488 1432 4 1076 6330 70 12 2 chr3 64373373 64374215 -95225568 + L1Md_F2 LINE L1 5720 6569 -13 4 1076 984 286 102 37 chr3 64375068 64375346 -95224437 + MTD LTR MaLR 22 323 -96 4 1076 1836 91 8 4 chr3 64375346 64375610 -95224173 - L1_Mus2 LINE L1 0 6566 6302 4 1076 984 286 102 37 chr3 64375610 64375705 -95224078 + MTD LTR MaLR 324 419 0 4 1076 2130 225 86 11 chr3 64375919 64376475 -95223308 + Lx7 LINE L1 6437 7034 -662 4 1076 37279 57 1 23 chr3 64376866 64383635 -95216148 - L1Md_T LINE L1 0 6582 99 4 1076 348 24 0 0 chr3 64383677 64383718 -95216065 + (GTTTG)n Simple_repeat Simple_repeat 4 44 0 4 1076 451 196 56 47 chr3 64383718 64383818 -95215965 - B1_Mus1 SINE Alu -8 140 38 4 1076 381 22 0 0 chr3 64383818 64383864 -95215919 - L1Md_F2 LINE L1 -397 6185 6140 4 1076 2303 84 21 13 chr3 64383862 64384227 -95215556 + L1Md_F2 LINE L1 6188 6594 -44 4 1076 331 162 0 24 chr3 64384322 64384404 -95215379 + CT-rich Low_complexity Low_complexity 6 85 0 4 1076 360 119 0 0 chr3 64384412 64384471 -95215312 + (TG)n Simple_repeat Simple_repeat 2 60 0 4 1076 27 0 0 0 chr3 64384658 64384685 -95215098 + AT_rich Low_complexity Low_complexity 1 27 0 4 1076 184 318 102 34 chr3 64384691 64384867 -95214916 - MIRb SINE MIR -5 263 76 4 1076 2290 159 51 9 chr3 64385629 64386060 -95213723 + Lx LINE L1 6199 6647 -7 4 1076 297 174 0 0 chr3 64386131 64386200 -95213583 + (TG)n Simple_repeat Simple_repeat 1 69 0 4 1076 4441 94 5 10 chr3 64386461 64387082 -95212701 - L1_Mus2 LINE L1 -1 6565 5948 4 1076 491 336 117 19 chr3 64387100 64387377 -95212406 - MTE2b LTR MaLR -79 300 1 4 1076 1483 220 100 5 chr3 64388506 64388886 -95210897 + MTD LTR MaLR 2 417 -2 4 1076 1490 211 9 16 chr3 64388940 64389262 -95210521 - RLTR46 LTR ERVK 0 320 1 4 1076 2703 195 24 19 chr3 64389262 64390049 -95209734 - MMERVK10C-int LTR ERVK -353 7228 6244 4 1076 1915 100 0 0 chr3 64390046 64390327 -95209456 - MMERVK10C-int LTR ERVK -5416 2165 1885 4 1076 338 175 138 0 chr3 64390318 64390398 -95209385 - MMERVK10C-int LTR ERVK -4227 1179 1089 4 1076 1334 169 122 44 chr3 64390448 64390844 -95208939 - RMER16-int LTR ERVK -4747 659 312 4 1076 609 192 69 0 chr3 64390828 64390958 -95208825 - MMERVK10C-int LTR ERVK -6906 675 537 4 1076 2465 254 49 51 chr3 64390953 64391873 -95207910 - IAPEY3-int LTR ERVK -6760 920 3 4 1076 1659 195 6 42 chr3 64391875 64391954 -95207829 - RLTR46 LTR ERVK 0 320 254 4 1076 5156 53 65 1 chr3 64391954 64392631 -95207152 - L1Md_F3 LINE L1 -14 6570 5851 4 1076 1659 195 6 42 chr3 64392631 64392883 -95206900 - RLTR46 LTR ERVK -67 253 1 4 1076 357 188 0 0 chr3 64394628 64394708 -95205075 + (TCTA)n Simple_repeat Simple_repeat 2 81 0 4 1076 28 0 0 26 chr3 64397585 64397612 -95202171 + AT_rich Low_complexity Low_complexity 1 27 0 5 1076 2757 35 34 6 chr3 64397612 64397961 -95201822 - L1Md_F3 LINE L1 -17 6567 6209 5 1076 28 0 0 26 chr3 64397961 64397972 -95201811 + AT_rich Low_complexity Low_complexity 1 11 0 5 1076 1200 217 72 18 chr3 64398436 64399074 -95200709 + L1_Mur3 LINE L1 894 1570 -4307 5 1076 3267 194 37 25 chr3 64399070 64399191 -95200592 + L1_Mur2 LINE L1 69 184 -6528 5 1076 6794 78 1 6 chr3 64399191 64400096 -95199687 + L1Md_F2 LINE L1 5670 6570 -12 5 1076 3267 194 37 25 chr3 64400096 64400132 -95199651 + L1_Mur2 LINE L1 185 221 -6491 5 1076 642 58 0 0 chr3 64400132 64400219 -95199564 + (CA)n Simple_repeat Simple_repeat 1 87 0 5 1076 3267 194 37 25 chr3 64400219 64400784 -95198999 + L1_Mur2 LINE L1 222 801 -5911 5 1076 234 62 0 0 chr3 64400999 64401031 -95198752 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 5 1076 253 254 74 91 chr3 64401354 64401475 -95198308 + Charlie12 DNA MER1_type 19 137 -2736 5 1076 339 25 0 0 chr3 64401475 64401515 -95198268 + (TTTA)n Simple_repeat Simple_repeat 3 42 0 5 1076 1187 89 0 0 chr3 64401515 64401673 -95198110 - B2_Mm2 SINE B2 -36 159 2 5 1076 241 288 91 77 chr3 64401759 64402045 -95197738 - B4A SINE B4 0 292 3 5 1076 273 220 0 17 chr3 64402079 64402139 -95197644 - RMER30 DNA MER1_type -139 63 5 5 1076 710 187 14 29 chr3 64402534 64402672 -95197111 - B1_Mus1 SINE Alu -7 141 6 5 1076 231 164 35 35 chr3 64402841 64402898 -95196885 - B3 SINE B2 -7 209 153 5 1076 675 117 0 0 chr3 64402902 64403005 -95196778 + (TTTC)n Simple_repeat Simple_repeat 1 103 0 5 1076 1846 47 112 0 chr3 64403005 64403263 -95196520 - L1_Mus1 LINE L1 -59 6508 6222 5 1076 664 246 35 0 chr3 64403270 64403412 -95196371 - B3 SINE B2 -67 149 3 5 1076 219 225 0 0 chr3 64403625 64403665 -95196118 + (TG)n Simple_repeat Simple_repeat 1 40 0 5 1076 227 339 0 0 chr3 64403738 64403794 -95195989 - B1F2 SINE Alu -92 57 2 5 1076 495 239 78 11 chr3 64405169 64405305 -95194478 + B3A SINE B2 2 145 -48 5 1076 619 258 74 42 chr3 64405779 64406091 -95193692 - L1MA6 LINE L1 -249 6051 5730 5 1076 542 320 0 0 chr3 64406906 64407056 -95192727 + RSINE1 SINE B4 2 151 -14 5 1076 1615 246 48 2 chr3 64407079 64407478 -95192305 + MTC LTR MaLR 3 419 -2 5 1076 477 0 0 0 chr3 64407538 64407591 -95192192 + (TGG)n Simple_repeat Simple_repeat 1 53 0 5 1076 1227 86 0 0 chr3 64407850 64408013 -95191770 + B2_Mm2 SINE B2 1 163 -32 5 1076 259 315 44 18 chr3 64408082 64408195 -95191588 - PB1D7 SINE Alu -1 119 4 5 1076 413 269 92 0 chr3 64408908 64409027 -95190756 - ID_B1 SINE B4 -3 221 92 5 1076 11653 95 2 0 chr3 64411012 64412755 -95187028 - L1_Mm LINE L1 -2051 3832 2086 5 1076 263 127 0 98 chr3 64412758 64412819 -95186964 + L1_Mm LINE L1 2946 3000 -2883 5 1076 15220 24 1 1 chr3 64412791 64414667 -95185116 + L1Md_T LINE L1 3712 5586 -297 5 1076 8392 37 0 0 chr3 64414667 64415663 -95184120 + L1Md_T LINE L1 5587 6582 0 5 1076 6111 66 0 1 chr3 64415720 64416569 -95183214 + L1_Mm LINE L1 3746 4593 -1290 5 1076 3743 120 2 5 chr3 64416587 64417147 -95182636 + L1_Mus2 LINE L1 6007 6564 -2 5 1076 271 342 61 0 chr3 64417304 64417418 -95182365 - MER58A DNA MER1_type -42 182 62 5 1076 373 331 57 25 chr3 64417579 64417737 -95182046 - MER5A DNA MER1_type -25 164 2 5 1076 24 67 0 0 chr3 64418945 64418990 -95180793 + AT_rich Low_complexity Low_complexity 1 45 0 5 1076 334 350 21 14 chr3 64419046 64419188 -95180595 - RSINE1 SINE B4 -19 146 4 5 1076 688 153 14 14 chr3 64419300 64419446 -95180337 + CT-rich Low_complexity Low_complexity 3 148 0 5 1076 314 256 175 8 chr3 64419504 64419630 -95180153 - B1_Mus1 SINE Alu 0 148 2 5 1076 252 158 0 0 chr3 64419825 64419882 -95179901 + (TG)n Simple_repeat Simple_repeat 2 58 0 5 1076 294 29 0 0 chr3 64420027 64420062 -95179721 + (TA)n Simple_repeat Simple_repeat 1 35 0 5 1076 198 0 0 0 chr3 64420062 64420083 -95179700 + (GA)n Simple_repeat Simple_repeat 2 23 0 5 1076 4850 144 19 14 chr3 64420469 64421702 -95178081 - Lx5 LINE L1 -522 6528 5285 5 1076 6743 129 44 40 chr3 64421709 64423511 -95176272 - L1_Mus2 LINE L1 -3 6563 4757 5 1076 7637 82 0 1 chr3 64423520 64424595 -95175188 + L1Md_F2 LINE L1 4511 5584 -299 5 1076 7860 51 3 4 chr3 64424598 64425579 -95174204 + L1Md_F2 LINE L1 5588 6567 -15 5 1076 26 50 0 0 chr3 64425952 64425992 -95173791 + AT_rich Low_complexity Low_complexity 1 40 0 5 1076 2767 124 2 2 chr3 64428154 64428600 -95171183 - L1_Mm LINE L1 -516 5367 4922 5 1076 2514 54 0 0 chr3 64428602 64428934 -95170849 - L1Md_F3 LINE L1 -414 6170 5839 5 1076 3090 44 10 8 chr3 64428934 64429321 -95170462 + L1Md_F3 LINE L1 6185 6572 -12 5 1076 28 61 0 0 chr3 64429321 64429370 -95170413 + AT_rich Low_complexity Low_complexity 1 49 0 5 1076 227 278 0 0 chr3 64429454 64429508 -95170275 + B1F SINE Alu 91 144 -5 5 1076 2698 132 36 0 chr3 64429846 64430294 -95169489 - L1_Mm LINE L1 -945 4938 4475 5 1076 5262 89 1 2 chr3 64430304 64431258 -95168525 + L1_Mus2 LINE L1 5372 6324 -242 5 1076 1055 163 27 0 chr3 64431261 64431445 -95168338 - B2_Mm2 SINE B2 -6 189 1 5 1076 627 92 0 35 chr3 64431974 64432087 -95167696 + L1_Mus2 LINE L1 6462 6570 -12 5 1076 2499 185 43 4 chr3 64432279 64432794 -95166989 - RMER21A LTR ERV1 -7 940 474 5 1076 1371 255 52 26 chr3 64432809 64433123 -95166660 + MTD LTR MaLR 21 347 -72 5 1076 190 56 56 0 chr3 64433123 64433159 -95166624 + (CAA)n Simple_repeat Simple_repeat 2 39 0 5 1076 1371 255 52 26 chr3 64433159 64433231 -95166552 + MTD LTR MaLR 348 416 -3 5 1076 207 0 0 0 chr3 64433790 64433813 -95165970 + (A)n Simple_repeat Simple_repeat 1 23 0 5 1076 21 0 0 0 chr3 64433938 64433959 -95165824 + AT_rich Low_complexity Low_complexity 1 21 0 5 1076 1143 62 0 52 chr3 64434087 64434241 -95165542 + B1_Mm SINE Alu 2 147 0 5 1076 183 203 0 0 chr3 64434256 64434315 -95165468 + A-rich Low_complexity Low_complexity 1 59 0 5 1076 189 0 0 0 chr3 64434598 64434619 -95165164 + (TTTA)n Simple_repeat Simple_repeat 4 24 0 5 1076 6164 157 8 3 chr3 64434621 64436235 -95163548 - L1_Mus4 LINE L1 -6 6630 5009 5 1076 954 118 7 0 chr3 64438309 64438444 -95161339 + B1_Mus1 SINE Alu 3 138 -10 5 1076 1499 228 2 87 chr3 64438559 64439054 -95160729 + L1_Mur2 LINE L1 1856 2308 -3569 5 1076 621 156 0 32 chr3 64439051 64439177 -95160606 + L1_Mm LINE L1 4985 5106 -777 5 1076 6373 56 0 18 chr3 64439181 64440055 -95159728 + L1Md_Gf LINE L1 285 1142 -5380 5 1076 14172 22 1 1 chr3 64442664 64444399 -95155384 + L1Md_T LINE L1 3853 5586 -297 5 1076 8433 33 2 0 chr3 64444399 64445393 -95154390 + L1Md_T LINE L1 5587 6582 0 5 1076 2913 183 7 0 chr3 64445393 64445957 -95153826 + L1_Mm LINE L1 5100 5667 -216 5 1076 2543 79 39 8 chr3 64445963 64446321 -95153462 - L1Md_F2 LINE L1 0 6582 6214 5 1076 2655 218 55 5 chr3 64446321 64447373 -95152410 + Lx5 LINE L1 5278 6394 -656 5 1076 231 36 0 0 chr3 64448012 64448040 -95151743 + (TTTA)n Simple_repeat Simple_repeat 3 30 0 5 1076 3067 236 70 21 chr3 64448042 64448868 -95150915 - Lx5 LINE L1 0 7050 6184 5 1076 1143 193 12 0 chr3 64448879 64449166 -95150617 + L1_Mur2 LINE L1 1173 1463 -4414 5 1076 1576 249 56 56 chr3 64449417 64449992 -95149791 + RMER15 LTR ERVL 1 575 0 5 1076 1167 246 12 61 chr3 64450079 64450425 -95149358 - ORR1A4 LTR MaLR 0 329 1 5 1076 209 305 0 0 chr3 64451249 64451308 -95148475 + GA-rich Low_complexity Low_complexity 6 64 0 5 1076 22 0 0 0 chr3 64451631 64451653 -95148130 + AT_rich Low_complexity Low_complexity 1 22 0 5 1076 941 296 98 48 chr3 64451997 64452394 -95147389 - MTD LTR MaLR 0 419 3 5 1076 231 343 39 33 chr3 64452396 64452577 -95147206 + L1MC4a LINE L1 6730 6911 -1084 5 1076 334 304 28 38 chr3 64452913 64453019 -95146764 - B1F1 SINE Alu 0 149 45 5 1076 302 325 6 101 chr3 64453147 64453219 -95146564 + L1MC4a LINE L1 7364 7429 -453 5 1076 556 338 20 0 chr3 64453219 64453423 -95146360 + B3 SINE B2 3 210 -6 5 1076 302 325 6 101 chr3 64453423 64453528 -95146255 + L1MC4a LINE L1 7430 7524 -358 5 1076 551 356 19 9 chr3 64453528 64453738 -95146045 + B3 SINE B2 5 216 0 5 1076 1045 102 0 0 chr3 64453908 64454055 -95145728 + L1_Mus1 LINE L1 6415 6561 -6 5 1076 498 33 0 0 chr3 64454066 64454126 -95145657 + (GAAA)n Simple_repeat Simple_repeat 2 61 0 5 1076 794 144 0 62 chr3 64454136 64454328 -95145455 + GA-rich Low_complexity Low_complexity 1 180 0 5 1076 204 40 0 0 chr3 64454331 64454356 -95145427 + (GA)n Simple_repeat Simple_repeat 2 26 0 5 1076 966 167 0 0 chr3 64454358 64454538 -95145245 + GA-rich Low_complexity Low_complexity 1 180 0 5 1076 696 56 0 0 chr3 64454539 64454628 -95145155 + (GGAA)n Simple_repeat Simple_repeat 4 92 0 5 1076 28 0 0 0 chr3 64455165 64455193 -95144590 + AT_rich Low_complexity Low_complexity 1 28 0 5 1076 3146 71 5 0 chr3 64456643 64457052 -95142731 - L1Md_F3 LINE L1 -1 6583 6173 5 1076 258 298 10 21 chr3 64458285 64458381 -95141402 + GA-rich Low_complexity Low_complexity 3 97 0 5 1076 600 73 0 0 chr3 64459007 64459089 -95140694 + (TTCC)n Simple_repeat Simple_repeat 3 84 0 5 1076 607 230 7 26 chr3 64459101 64459253 -95140530 - B1_Mur4 SINE Alu 0 150 2 5 1076 506 279 56 43 chr3 64460479 64460640 -95139143 - B4A SINE B4 0 292 130 5 1076 22 0 0 0 chr3 64460693 64460715 -95139068 + AT_rich Low_complexity Low_complexity 1 22 0 5 1076 430 269 38 6 chr3 64461069 64461226 -95138557 - MER5A1 DNA MER1_type -2 164 3 5 1076 3237 16 0 5 chr3 64461479 64461848 -95137935 + IAPLTR1_Mm LTR ERVK 1 367 0 5 1076 23817 31 35 3 chr3 64461848 64464823 -95134960 + IAPEz-int LTR ERVK 8 3076 -3405 5 1076 7013 26 3 0 chr3 64464809 64465658 -95134125 + IAPEz-int LTR ERVK 5630 6481 0 5 1076 3237 16 0 5 chr3 64465658 64466027 -95133756 + IAPLTR1_Mm LTR ERVK 1 367 0 5 1076 230 308 0 0 chr3 64466787 64466839 -95132944 - tRNA-Ala-GCY_ tRNA tRNA -23 52 1 5 1076 24 77 0 0 chr3 64468092 64468144 -95131639 + AT_rich Low_complexity Low_complexity 1 52 0 5 1076 2991 93 2 0 chr3 64469076 64469475 -95130308 - MTB LTR MaLR 0 400 1 5 1076 916 277 130 32 chr3 64470271 64470528 -95129255 + MTD LTR MaLR 1 289 -130 5 1076 4284 50 29 7 chr3 64470528 64471087 -95128696 - L1Md_F3 LINE L1 -14 6570 6000 5 1076 916 253 58 32 chr3 64471087 64471213 -95128570 + MTD LTR MaLR 287 405 -14 5 1076 1978 256 83 3 chr3 64471399 64471992 -95127791 + Lx7 LINE L1 6401 7040 -656 5 1076 458 177 0 0 chr3 64472437 64472516 -95127267 - B1_Mur4 SINE Alu -1 149 71 6 1076 967 55 49 0 chr3 64472522 64472686 -95127097 + (TC)n Simple_repeat Simple_repeat 1 172 0 6 1076 203 162 0 0 chr3 64472705 64472742 -95127041 + CT-rich Low_complexity Low_complexity 2 38 0 6 1076 272 282 4 0 chr3 64472763 64472824 -95126959 - B1F2 SINE Alu -76 73 11 6 1076 477 0 0 0 chr3 64475192 64475245 -95124538 + (TC)n Simple_repeat Simple_repeat 1 53 0 6 1076 240 86 0 0 chr3 64475247 64475282 -95124501 + (TG)n Simple_repeat Simple_repeat 2 36 0 6 1076 21 57 0 0 chr3 64475470 64475505 -95124278 + AT_rich Low_complexity Low_complexity 1 35 0 6 1076 423 0 0 0 chr3 64476480 64476527 -95123256 + (TG)n Simple_repeat Simple_repeat 2 48 0 6 1076 21 36 0 0 chr3 64477753 64477781 -95122002 + AT_rich Low_complexity Low_complexity 1 28 0 6 1076 23 0 0 0 chr3 64477813 64477836 -95121947 + AT_rich Low_complexity Low_complexity 1 23 0 6 1076 415 361 46 34 chr3 64477839 64478014 -95121769 + B3A SINE B2 21 197 -1 6 1076 255 381 70 6 chr3 64478501 64478657 -95121126 - MER58A DNA MER1_type -45 179 14 6 1076 1957 96 4 4 chr3 64478710 64478991 -95120792 - L1_Mus1 LINE L1 -3 6564 6284 6 1076 4350 64 19 0 chr3 64478991 64479581 -95120202 + L1Md_F2 LINE L1 5695 6295 -287 6 1076 382 351 22 0 chr3 64479677 64479811 -95119972 - MER5A DNA MER1_type -9 180 44 6 1076 316 0 0 43 chr3 64480995 64481041 -95118742 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 6 1076 2696 111 0 48 chr3 64481051 64481468 -95118315 - L1_Mus2 LINE L1 0 6566 6170 6 1076 23 68 0 0 chr3 64481490 64481534 -95118249 + AT_rich Low_complexity Low_complexity 1 44 0 6 1076 433 331 31 49 chr3 64481563 64481725 -95118058 - RSINE1 SINE B4 0 165 7 6 1076 13152 148 9 50 chr3 64481790 64482537 -95117246 + L1_Mus3 LINE L1 3365 4101 -1782 6 1076 3454 39 2 0 chr3 64482537 64482952 -95116831 + L1Md_T LINE L1 6167 6582 0 6 1076 13152 131 7 33 chr3 64482952 64485412 -95114371 + L1_Mus3 LINE L1 4102 6469 -169 6 1076 1017 182 21 10 chr3 64485412 64485606 -95114177 - RLTR22_Mur LTR ERVK -1652 196 1 6 1076 3167 38 128 0 chr3 64485651 64486072 -95113711 + IAPLTR2_Mm LTR ERVK 1 475 0 6 1076 738 292 12 0 chr3 64486099 64486339 -95113444 - Lx9 LINE L1 -667 6977 6735 6 1076 1717 134 4 0 chr3 64486834 64487110 -95112673 - Lx2 LINE L1 0 6997 6721 6 134 1778 154 27 0 chr3 64487111 64487442 -95112341 + Lx2 LINE L1 6042 6381 -616 6 1077 275 375 39 0 chr3 64487744 64487848 -95111935 - MTE2a LTR MaLR -196 183 76 6 1077 390 42 0 0 chr3 64487862 64487910 -95111873 + (TTTA)n Simple_repeat Simple_repeat 1 48 0 6 1077 279 0 0 0 chr3 64487970 64488001 -95111782 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 6 1077 1099 184 57 53 chr3 64488001 64488265 -95111518 - Lx3A LINE L1 -13 6968 6704 6 1077 225 82 61 0 chr3 64488290 64488339 -95111444 + (TA)n Simple_repeat Simple_repeat 2 53 0 6 1077 7631 112 38 60 chr3 64488487 64489821 -95109962 - RLTR22_Mur LTR ERVK 0 1848 545 6 1077 531 0 0 0 chr3 64489860 64489919 -95109864 + (TTTTG)n Simple_repeat Simple_repeat 2 60 0 6 1077 1045 109 0 0 chr3 64489919 64490057 -95109726 - B1_Mus1 SINE Alu -10 138 1 6 1077 191 125 25 0 chr3 64490239 64490279 -95109504 + (TCTA)n Simple_repeat Simple_repeat 4 44 0 6 1077 32 0 0 0 chr3 64490823 64490855 -95108928 + AT_rich Low_complexity Low_complexity 1 32 0 6 1077 5727 76 0 12 chr3 64490855 64491624 -95108159 - L1Md_F2 LINE L1 -14 6568 5809 6 1077 357 109 31 0 chr3 64491946 64492010 -95107773 - Lx3A LINE L1 -759 5127 5062 6 1077 2625 132 24 9 chr3 64491995 64492453 -95107330 + Lx3A LINE L1 5136 5600 -286 6 1077 2596 117 5 8 chr3 64492465 64492861 -95106922 - BGLII LTR ERVK -26 395 1 6 1077 8061 131 16 9 chr3 64492861 64494228 -95105555 + Lx3A LINE L1 5593 6968 -13 6 1077 243 0 0 0 chr3 64494228 64494255 -95105528 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 6 1077 23 33 0 0 chr3 64494256 64494286 -95105497 + AT_rich Low_complexity Low_complexity 1 30 0 6 1077 22 70 0 0 chr3 64495677 64495720 -95104063 + AT_rich Low_complexity Low_complexity 1 43 0 6 1077 217 167 0 53 chr3 64497756 64497813 -95101970 + A-rich Low_complexity Low_complexity 3 56 0 6 1077 1852 199 26 16 chr3 64497996 64498501 -95101282 + L1_Mur2 LINE L1 2975 3484 -2396 6 1077 518 98 12 0 chr3 64498503 64498585 -95101198 + (GGAA)n Simple_repeat Simple_repeat 3 85 0 6 1077 204 111 0 0 chr3 64498590 64498626 -95101157 + (GA)n Simple_repeat Simple_repeat 1 36 0 6 1077 1064 100 0 6 chr3 64498629 64498790 -95100993 + (GAAA)n Simple_repeat Simple_repeat 3 162 0 6 1077 3456 174 83 21 chr3 64498792 64499648 -95100135 + L1_Mur2 LINE L1 3487 4395 -1482 6 1077 198 143 0 0 chr3 64499654 64499689 -95100094 + (TCCC)n Simple_repeat Simple_repeat 2 36 0 6 1077 486 206 0 1 chr3 64499693 64499829 -95099954 - L1_Mur3 LINE L1 -420 3494 3356 6 1077 426 20 0 0 chr3 64499829 64499880 -95099903 + (TAGA)n Simple_repeat Simple_repeat 4 54 0 6 1077 245 240 0 0 chr3 64499924 64499999 -95099784 + L1_Mur2 LINE L1 4422 4496 -1384 6 1077 542 245 12 1 chr3 64500028 64500188 -95099595 + Lx5 LINE L1 5621 5776 -104 1 1077 600 282 44 16 chr3 64500184 64500436 -95099347 + Lx2B LINE L1 6742 7000 0 2 1077 1470 281 86 11 chr3 64500428 64501113 -95098670 + Lx5 LINE L1 5783 6736 -724 1 1077 1616 139 0 0 chr3 64501139 64501419 -95098364 - Lx2 LINE L1 -1716 4161 3882 3 1077 1233 140 0 0 chr3 64501418 64501632 -95098151 + Lx2 LINE L1 4081 4294 -1583 3 1077 37402 31 1 14 chr3 64501632 64507453 -95092330 + L1Md_A LINE L1 453 6186 -396 4 1077 4044 76 0 0 chr3 64507453 64507978 -95091805 - L1Md_T LINE L1 0 6582 6058 5 1077 3500 32 0 0 chr3 64507978 64508387 -95091396 + L1Md_A LINE L1 6172 6580 -2 4 1077 7111 189 25 6 chr3 64508388 64508732 -95091051 + Lx2 LINE L1 4281 4630 -1247 3 1077 224 0 0 61 chr3 64508732 64508765 -95091018 + (CAA)n Simple_repeat Simple_repeat 2 32 0 6 1077 7111 159 24 5 chr3 64508765 64510593 -95089190 + Lx2 LINE L1 4631 6502 -495 3 1077 21 0 0 0 chr3 64510883 64510904 -95088879 + AT_rich Low_complexity Low_complexity 1 21 0 7 1077 395 227 67 170 chr3 64511322 64511607 -95088176 + MER33 DNA MER1_type 10 270 -54 8 1077 29467 102 18 8 chr3 64511845 64517144 -95082639 + L1Md_F2 LINE L1 242 5586 -297 9 1077 8045 45 5 5 chr3 64517144 64518138 -95081645 + L1Md_F2 LINE L1 5587 6580 -2 9 1077 292 274 0 58 chr3 64522015 64522090 -95077693 + A-rich Low_complexity Low_complexity 3 74 0 1 1077 1070 128 0 11 chr3 64522090 64522272 -95077511 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 1 1077 811 75 8 8 chr3 64522272 64522393 -95077390 + (GGAA)n Simple_repeat Simple_repeat 1 121 0 1 1077 292 274 0 58 chr3 64522393 64522436 -95077347 + A-rich Low_complexity Low_complexity 75 114 0 1 1077 726 222 0 22 chr3 64523052 64523190 -95076593 - B1_Mur4 SINE Alu -4 146 12 1 1077 920 201 589 17 chr3 64523898 64524062 -95075721 - L1_Mur2 LINE L1 -3572 2305 2052 1 1077 495 0 0 0 chr3 64524062 64524117 -95075666 + (TC)n Simple_repeat Simple_repeat 2 56 0 1 1077 225 0 0 0 chr3 64524117 64524141 -95075642 + (TG)n Simple_repeat Simple_repeat 2 26 0 1 1077 920 234 59 13 chr3 64524141 64524384 -95075399 - L1_Mur2 LINE L1 -3826 2051 1793 1 1077 279 185 0 0 chr3 64524389 64524443 -95075340 + Lx5 LINE L1 6854 6907 -143 1 1077 1323 272 78 21 chr3 64524497 64524974 -95074809 + Lx5 LINE L1 6532 7035 -15 1 1077 735 44 0 0 chr3 64524976 64525067 -95074716 + (TAGA)n Simple_repeat Simple_repeat 4 94 0 2 1077 270 81 0 0 chr3 64526004 64526041 -95073742 + (TA)n Simple_repeat Simple_repeat 2 38 0 2 1077 407 293 38 0 chr3 64526729 64526862 -95072921 - MER5A1 DNA MER1_type -4 162 25 2 1077 208 176 19 19 chr3 64527063 64527115 -95072668 + CT-rich Low_complexity Low_complexity 1 52 0 2 1077 247 266 40 8 chr3 64527194 64527319 -95072464 + (CA)n Simple_repeat Simple_repeat 1 129 0 2 1077 789 11 0 0 chr3 64528061 64528151 -95071632 + (CTGTG)n Simple_repeat Simple_repeat 5 94 0 2 1077 399 21 0 0 chr3 64529606 64529654 -95070129 + (TAAA)n Simple_repeat Simple_repeat 3 50 0 2 1077 1029 249 48 105 chr3 64529760 64530160 -95069623 + Lx5 LINE L1 6670 7046 -4 2 1077 185 35 69 0 chr3 64530345 64530374 -95069409 + (GAAA)n Simple_repeat Simple_repeat 2 32 0 2 1077 426 20 0 0 chr3 64532117 64532168 -95067615 + (TTTTG)n Simple_repeat Simple_repeat 2 52 0 2 1077 10998 30 1 1 chr3 64532354 64534403 -95065380 - L1Md_T LINE L1 -13 6569 4522 3 1077 855 293 92 45 chr3 64534409 64534663 -95065120 + MTD LTR MaLR 46 323 -96 3 1077 1845 80 8 4 chr3 64534663 64534927 -95064856 - L1_Mus2 LINE L1 0 6566 6302 3 1077 855 293 92 45 chr3 64534927 64535029 -95064754 + MTD LTR MaLR 324 419 0 3 1077 2105 228 87 12 chr3 64535231 64535803 -95063980 + Lx7 LINE L1 6420 7034 -662 3 1077 706 55 9 9 chr3 64536211 64536320 -95063463 + (GTTTG)n Simple_repeat Simple_repeat 4 112 0 3 1077 466 135 33 8 chr3 64536321 64536419 -95063364 - B1_Mur4 SINE Alu -8 142 38 3 1077 339 45 0 0 chr3 64536419 64536463 -95063320 - L1Md_F2 LINE L1 -397 6185 6142 3 1077 2931 73 0 10 chr3 64536463 64536852 -95062931 + L1Md_F2 LINE L1 6188 6572 -10 3 1077 201 64 41 41 chr3 64536903 64536952 -95062831 + (TCTCTG)n Simple_repeat Simple_repeat 4 52 0 3 1077 358 282 106 49 chr3 64536952 64537075 -95062708 - B1_Mur2 SINE Alu 0 149 20 3 1077 22 0 0 0 chr3 64537142 64537164 -95062619 + AT_rich Low_complexity Low_complexity 1 22 0 3 1077 227 105 52 17 chr3 64538668 64538726 -95061057 + CT-rich Low_complexity Low_complexity 1 60 0 4 1077 2676 83 0 38 chr3 64539261 64539660 -95060123 + L1Md_F2 LINE L1 6195 6578 -4 4 1077 25 0 0 0 chr3 64539871 64539896 -95059887 + AT_rich Low_complexity Low_complexity 1 25 0 4 1077 303 173 24 12 chr3 64540090 64540172 -95059611 + CT-rich Low_complexity Low_complexity 1 83 0 4 1077 576 73 0 0 chr3 64540172 64540254 -95059529 + (TG)n Simple_repeat Simple_repeat 1 82 0 4 1077 33 0 0 0 chr3 64540430 64540463 -95059320 + AT_rich Low_complexity Low_complexity 1 33 0 4 1077 197 324 92 25 chr3 64540469 64540650 -95059133 - MIRb SINE MIR -5 263 61 4 1077 2388 152 49 9 chr3 64541398 64541830 -95057953 + Lx LINE L1 6199 6647 -7 4 1077 300 164 0 0 chr3 64541899 64541966 -95057817 + (TG)n Simple_repeat Simple_repeat 1 67 0 4 1077 4201 102 35 10 chr3 64542229 64542834 -95056949 - L1_Mus2 LINE L1 -1 6565 5946 4 1077 398 293 148 14 chr3 64542970 64543112 -95056671 - MTE2b LTR MaLR -218 161 1 5 1077 2710 60 40 6 chr3 64544095 64544448 -95055335 + RLTR10B2 LTR ERVK 1 365 0 5 1077 1124 99 0 0 chr3 64544458 64544620 -95055163 + RLTR10-int LTR ERVK 41 202 -1785 5 1077 253 260 0 0 chr3 64544620 64544670 -95055113 + RLTR27 LTR ERVK 223 272 -37 5 1077 311 24 95 0 chr3 64544670 64544712 -95055071 + RLTR10-int LTR ERVK 222 267 -7314 5 1077 383 38 139 0 chr3 64544806 64544885 -95054898 + GA-rich Low_complexity Low_complexity 4 93 0 5 1077 2760 52 106 0 chr3 64544885 64545271 -95054512 + RLTR10-int LTR ERVK 566 992 -995 5 1077 414 304 35 35 chr3 64545327 64545689 -95054094 + IAP-d-int LTR ERVK 738 1012 -5530 5 1077 1418 96 104 0 chr3 64545701 64545931 -95053852 + IAP-d-int LTR ERVK 5002 5255 -1287 5 1077 3823 118 22 7 chr3 64545931 64546614 -95053169 + IAPEY3-int LTR ERVK 6965 7680 0 5 1077 2611 64 10 91 chr3 64546614 64547011 -95052772 + RLTR10B2 LTR ERVK 1 365 0 5 1077 1441 221 101 14 chr3 64547448 64547815 -95051968 + MTD LTR MaLR 19 417 -2 5 1077 248 179 155 35 chr3 64550219 64550277 -95049506 + B1F SINE Alu 83 147 -2 5 1077 5249 78 7 0 chr3 64550278 64551013 -95048770 - L1Md_F2 LINE L1 -562 5321 4582 5 1077 1855 35 9 0 chr3 64551010 64551240 -95048543 + L1Md_F2 LINE L1 5355 5586 -297 5 1077 7076 79 21 5 chr3 64551240 64552218 -95047565 + L1Md_F2 LINE L1 5587 6580 -2 5 1077 1224 218 101 18 chr3 64552697 64553335 -95046448 + L1_Mur3 LINE L1 894 1570 -4307 5 1077 4225 175 33 34 chr3 64553331 64553452 -95046331 + L1_Mur2 LINE L1 443 558 -6528 6 1077 6861 70 5 6 chr3 64553452 64554347 -95045436 + L1Md_F2 LINE L1 5670 6563 -19 6 1077 11170 148 32 23 chr3 64554347 64555814 -95043969 + L1_Mur2 LINE L1 559 2052 -3825 6 1077 303 28 0 0 chr3 64555814 64555850 -95043933 + (CA)n Simple_repeat Simple_repeat 1 36 0 6 1077 11177 138 29 32 chr3 64555850 64557170 -95042613 + L1_Mur2 LINE L1 2053 3351 -2526 6 1077 1530 98 20 49 chr3 64557170 64557417 -95042366 - L1Md_F2 LINE L1 -19 6563 6324 6 1077 11177 138 29 32 chr3 64557417 64557878 -95041905 + L1_Mur2 LINE L1 3352 3808 -2069 6 1077 4782 191 21 37 chr3 64557918 64559156 -95040627 + L1_Mur3 LINE L1 3067 4284 -1596 6 1077 5660 127 17 9 chr3 64559159 64560035 -95039748 + Lx3A LINE L1 6090 6972 -9 6 1077 183 129 0 0 chr3 64560045 64560076 -95039707 + (A)n Simple_repeat Simple_repeat 1 31 0 6 1077 1931 199 108 6 chr3 64560911 64561391 -95038392 + Lx5 LINE L1 5921 6449 -601 6 1077 189 0 0 0 chr3 64561393 64561414 -95038369 + (A)n Simple_repeat Simple_repeat 1 21 0 6 1077 1532 173 198 30 chr3 64561414 64561848 -95037935 + RMER16-int LTR ERVK 313 819 -4587 6 1077 340 195 130 0 chr3 64561853 64561930 -95037853 + RMER16-int LTR ERVK 938 1024 -5113 6 1077 804 242 75 5 chr3 64561933 64562145 -95037638 + ETnERV2-int LTR ERVK 2522 2748 -4658 7 1077 9509 143 32 6 chr3 64562177 64563877 -95035906 + ETnERV2-int LTR ERVK 2935 4679 -2727 7 1077 3060 48 0 0 chr3 64563875 64564269 -95035514 + ETnERV2-int LTR ERVK 5356 5749 -1657 7 1077 2712 44 9 3 chr3 64564269 64564609 -95035174 + L1Md_F3 LINE L1 6229 6570 -14 7 1077 268 233 80 27 chr3 64564609 64564684 -95035099 + RLTR25B LTR ERVK 431 509 -519 7 1077 700 50 29 10 chr3 64564622 64564724 -95035059 + B1_Mm SINE Alu 44 147 0 7 1077 345 141 0 0 chr3 64564724 64564795 -95034988 + (A)n Simple_repeat Simple_repeat 1 71 0 7 1077 5794 144 71 94 chr3 64564795 64566230 -95033553 + RLTR45-int LTR ERVK 4670 6071 -1173 7 1077 784 279 18 12 chr3 64566232 64566586 -95033197 + RLTR45-int LTR ERVK 7506 7826 -391 7 1077 4480 141 22 1 chr3 64566617 64567306 -95032477 + ETnERV2-int LTR ERVK 6494 7196 -210 7 1077 2313 236 83 0 chr3 64567698 64568253 -95031530 + Lx5 LINE L1 6447 7047 -3 6 1077 8120 50 1 0 chr3 64568735 64569730 -95030053 + L1Md_F2 LINE L1 5587 6582 0 7 1077 5778 46 0 6 chr3 64569929 64570636 -95029147 + L1Md_F2 LINE L1 5880 6582 0 7 1077 244 51 0 0 chr3 64570653 64570692 -95029091 + L1_Mus2 LINE L1 6528 6566 0 7 1077 29 0 0 0 chr3 64570692 64570721 -95029062 + AT_rich Low_complexity Low_complexity 1 29 0 8 1077 573 362 50 9 chr3 64570769 64570989 -95028794 - B4A SINE B4 -14 278 50 8 1077 561 246 14 20 chr3 64572558 64572740 -95027043 - B3 SINE B2 -13 182 1 8 1077 277 341 55 8 chr3 64572792 64572919 -95026864 + B1_Mur1 SINE Alu 5 137 -12 8 1077 374 327 38 13 chr3 64573877 64574035 -95025748 - MER5A1 DNA MER1_type -2 164 3 8 1077 3952 122 3 7 chr3 64575002 64575594 -95024189 - Lx LINE L1 -2 6652 6063 8 1077 796 267 126 47 chr3 64578142 64578523 -95021260 + MTD LTR MaLR 5 415 -4 8 1077 330 248 53 9 chr3 64578580 64578694 -95021089 + Lx7 LINE L1 713 831 -6897 8 1077 2384 226 62 9 chr3 64578732 64579294 -95020489 + Lx7 LINE L1 6441 7032 -664 8 1077 351 370 48 11 chr3 64579372 64579558 -95020225 + MLT1D LTR MaLR 273 465 -40 8 1077 272 127 18 0 chr3 64579708 64579763 -95020020 + (TTTTC)n Simple_repeat Simple_repeat 5 60 0 8 1077 603 248 28 21 chr3 64579779 64579923 -95019860 - B1_Mur4 SINE Alu -5 145 1 9 1077 3621 72 2 10 chr3 64579960 64580440 -95019343 + L1Md_F2 LINE L1 6099 6574 -8 9 1077 21 0 0 0 chr3 64580841 64580862 -95018921 + AT_rich Low_complexity Low_complexity 1 21 0 9 1077 216 86 0 0 chr3 64583677 64583712 -95016071 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 9 1077 228 369 96 36 chr3 64585505 64585755 -95014028 - L2 LINE L2 -666 2753 2489 9 1077 414 0 0 0 chr3 64586063 64586109 -95013674 + (TG)n Simple_repeat Simple_repeat 1 46 0 9 1077 267 303 53 39 chr3 64586693 64586899 -95012884 - MMERVK10C-int LTR ERVK -2495 5086 4878 9 1077 257 352 0 0 chr3 64587320 64587408 -95012375 + ORR1E LTR MaLR 75 162 -197 9 1077 849 311 126 98 chr3 64587522 64588116 -95011667 - RLTR18 LTR ERVK -3 613 3 9 1077 2862 171 28 6 chr3 64589352 64589972 -95009811 + Lx5 LINE L1 5304 5940 -1110 9 1077 695 171 0 18 chr3 64589973 64590111 -95009672 + Lx5 LINE L1 6334 6492 -484 9 1077 4237 168 21 20 chr3 64590128 64590875 -95008908 - Lx4A LINE L1 -3 7055 6308 1 1077 880 144 56 34 chr3 64590878 64591057 -95008726 + Lx4A LINE L1 6155 6337 -721 1 1077 696 205 149 12 chr3 64591048 64591216 -95008567 + Lx5 LINE L1 6436 6626 -424 1 1077 3616 178 58 46 chr3 64591207 64592301 -95007482 + Lx LINE L1 5541 6648 -6 1 1077 5470 109 31 7 chr3 64592318 64593216 -95006567 + Lx2 LINE L1 5999 6918 -79 1 1077 6254 42 1 0 chr3 64593216 64593987 -95005796 + RLTR45-int LTR ERVK 6473 7244 0 1 1077 2714 134 40 19 chr3 64593987 64594459 -95005324 + RLTR45 LTR ERVK 1 482 0 1 1077 1471 204 45 27 chr3 64594459 64594820 -95004963 + RLTR11A2 LTR ERVK 152 547 -30 1 1077 22 0 0 0 chr3 64595493 64595515 -95004268 + AT_rich Low_complexity Low_complexity 1 22 0 1 1077 29417 83 7 7 chr3 64598690 64603898 -94995885 + L1Md_F2 LINE L1 375 5586 -297 1 1077 7050 83 18 11 chr3 64603898 64604887 -94994896 + L1Md_F2 LINE L1 5587 6582 0 1 1077 3056 89 43 21 chr3 64606889 64607052 -94992731 + RLTR44D LTR ERVK 3 165 -321 1 1077 405 0 0 0 chr3 64607052 64607097 -94992686 + (TG)n Simple_repeat Simple_repeat 1 45 0 1 1077 3056 89 43 21 chr3 64607097 64607401 -94992382 + RLTR44D LTR ERVK 166 479 -7 1 1077 556 88 91 73 chr3 64607422 64607532 -94992251 + RLTR44-int LTR ERVK 1 112 -2700 1 1077 4124 77 133 1 chr3 64607532 64608193 -94991590 + RLTR44-int LTR ERVK 40 787 -2025 1 1077 2577 10 0 0 chr3 64608196 64608498 -94991285 - L1_Mm LINE L1 -1 5882 5581 1 1077 3787 57 2 2 chr3 64608498 64608990 -94990793 + RLTR44-int LTR ERVK 2321 2812 0 1 1077 3162 106 2 40 chr3 64608990 64609492 -94990291 + RLTR44D LTR ERVK 1 483 -3 1 1077 31064 61 3 6 chr3 64609492 64615378 -94984405 + L1Md_F3 LINE L1 500 6345 -239 1 1077 3148 46 0 5 chr3 64615574 64615988 -94983795 + RLTR45-int LTR ERVK 5661 6072 -1172 1 1077 2050 100 10 3 chr3 64616010 64616310 -94983473 + RLTR13B1 LTR ERVK 207 508 -385 1 1077 7020 46 1 1 chr3 64616311 64617184 -94982599 + RLTR45-int LTR ERVK 6334 7206 -38 1 1077 2482 99 82 91 chr3 64617196 64617682 -94982101 + RLTR45 LTR ERVK 1 482 0 1 134 36801 8 0 1 chr3 64617709 64623710 -94976073 + L1Md_A LINE L1 1 5586 -297 1 1078 9013 5 0 0 chr3 64623710 64624711 -94975072 + L1Md_A LINE L1 5587 6582 0 1 1078 1304 50 56 0 chr3 64624711 64624914 -94974869 + L1Md_F3 LINE L1 6381 6584 0 1 1078 1429 103 45 4 chr3 64624962 64625205 -94974578 + L1Md_A LINE L1 459 711 -6013 1 1078 23869 22 7 6 chr3 64625184 64627545 -94972238 + L1Md_A LINE L1 1367 3727 -2156 1 1078 1486 58 5 0 chr3 64627545 64627734 -94972049 + L1Md_T LINE L1 6390 6579 -3 1 1078 23869 22 7 6 chr3 64627734 64628413 -94971370 + L1Md_A LINE L1 3728 4410 -1473 1 1078 7896 35 0 3 chr3 64628413 64629355 -94970428 + L1Md_T LINE L1 5644 6582 0 1 1078 783 271 75 136 chr3 64630463 64630809 -94968974 - MTD LTR MaLR -14 405 81 1 1078 225 242 194 0 chr3 64631145 64631207 -94968576 + PB1D7 SINE Alu 45 118 -2 1 1078 225 267 17 0 chr3 64633334 64633394 -94966389 + GA-rich Low_complexity Low_complexity 2 62 0 1 1078 477 0 0 0 chr3 64633587 64633640 -94966143 + (CAAAA)n Simple_repeat Simple_repeat 2 54 0 1 1078 2404 169 53 18 chr3 64634860 64635366 -94964417 + RLTR28 LTR ERVL 1 524 0 1 1078 801 247 23 6 chr3 64635545 64635720 -94964063 + ORR1E LTR MaLR 3 180 -179 1 1078 295 323 10 0 chr3 64635866 64635962 -94963821 - MLT1H2 LTR MaLR -3 486 390 1 1078 227 200 0 0 chr3 64637042 64637092 -94962691 + (TTTG)n Simple_repeat Simple_repeat 3 52 0 1 1078 220 375 10 10 chr3 64637395 64637492 -94962291 - MER5A DNA MER1_type -52 137 41 1 1078 182 306 56 0 chr3 64639105 64639177 -94960606 + L2 LINE L2 1441 1516 -1903 1 1078 14208 119 21 84 chr3 64639223 64642679 -94957104 + L1VL2 LINE L1 124 3328 -287 1 1078 7773 132 16 14 chr3 64642678 64644164 -94955619 + L1_Mus3 LINE L1 4465 5942 -696 1 1078 3033 127 34 19 chr3 64644167 64644696 -94955087 + L1_Mus3 LINE L1 6102 6638 0 1 1078 261 344 90 27 chr3 64644704 64644892 -94954891 + L2 LINE L2 1586 1785 -1634 1 1078 197 348 108 36 chr3 64645075 64645242 -94954541 + L2 LINE L2 2327 2505 -914 1 1078 690 13 0 0 chr3 64646245 64646324 -94953459 + (TTTTG)n Simple_repeat Simple_repeat 2 80 0 1 1078 4467 164 54 72 chr3 64646943 64647675 -94952108 + RMER21A LTR ERV1 1 703 -244 1 1078 377 16 48 16 chr3 64647675 64647738 -94952045 + (CAGAG)n Simple_repeat Simple_repeat 3 67 0 1 1078 4467 164 54 72 chr3 64647738 64647967 -94951816 + RMER21A LTR ERV1 704 945 -2 1 1078 373 241 0 0 chr3 64647967 64648039 -94951744 + RMER21B LTR ERV1 763 834 -8 1 1078 502 260 151 93 chr3 64648462 64648839 -94950944 - MLT1A1 LTR MaLR -9 399 1 1 1078 2076 162 10 5 chr3 64648935 64649319 -94950464 - Lx5 LINE L1 -1035 6015 5630 1 1078 555 279 42 19 chr3 64649314 64649526 -94950257 + Lx5 LINE L1 6040 6256 -794 1 1078 1834 269 18 28 chr3 64649518 64650064 -94949719 + Lx5 LINE L1 6504 7044 -6 1 1078 582 15 0 0 chr3 64650708 64650775 -94949008 + (TG)n Simple_repeat Simple_repeat 2 68 0 1 1078 2142 288 45 25 chr3 64650775 64651686 -94948097 + Lx8 LINE L1 6200 7155 -318 1 1078 435 222 101 17 chr3 64651786 64651905 -94947878 - MLT1A1 LTR MaLR -279 129 1 1 1078 2115 164 3 3 chr3 64652001 64652387 -94947396 - Lx5 LINE L1 -1035 6015 5630 1 1078 3411 246 11 19 chr3 64652390 64653243 -94946540 + Lx5 LINE L1 6092 6937 -113 1 1078 432 0 0 0 chr3 64653350 64653398 -94946385 + (TG)n Simple_repeat Simple_repeat 2 49 0 1 1078 2340 299 61 57 chr3 64653398 64653473 -94946310 + Lx8 LINE L1 6200 6266 -1207 1 1078 3355 44 10 0 chr3 64653473 64653883 -94945900 + L1Md_F2 LINE L1 6169 6582 0 1 1078 2340 299 61 57 chr3 64653883 64654971 -94944812 + Lx8 LINE L1 6267 7368 -105 1 1078 983 260 172 80 chr3 64654971 64655510 -94944273 + RLTR18 LTR ERVK 1 589 -27 1 1078 207 157 27 41 chr3 64655585 64655658 -94944125 + (TATAA)n Simple_repeat Simple_repeat 4 75 0 1 1078 313 285 41 71 chr3 64655682 64655852 -94943931 + L1MEg LINE L1 1311 1475 -4609 1 1078 462 267 0 29 chr3 64656126 64656230 -94943553 - PB1D10 SINE Alu -7 110 10 1 1078 2412 214 76 0 chr3 64657226 64657778 -94942005 - Lx5 LINE L1 -8 7042 6449 1 1078 525 129 10 10 chr3 64657778 64657880 -94941903 + L1_Mur2 LINE L1 5198 5299 -578 1 1078 3022 111 47 0 chr3 64657875 64658344 -94941439 - L1VL4 LINE L1 -5612 690 200 1 1078 393 304 20 56 chr3 64658586 64658837 -94940946 + L1_Mur3 LINE L1 4946 5187 -693 1 1078 1641 282 60 110 chr3 64658898 64659746 -94940037 + RLTR22_Mur LTR ERVK 1 806 -1042 1 1078 631 257 155 103 chr3 64659735 64659949 -94939834 + RLTR22_Mur LTR ERVK 1128 1379 -469 1 1078 435 38 0 0 chr3 64659949 64660002 -94939781 + (TG)n Simple_repeat Simple_repeat 2 54 0 1 1078 631 257 155 103 chr3 64660002 64660037 -94939746 + RLTR22_Mur LTR ERVK 1380 1434 -414 1 1078 180 111 0 0 chr3 64660037 64660064 -94939719 + (TATG)n Simple_repeat Simple_repeat 4 30 0 1 1078 631 257 155 103 chr3 64660064 64660151 -94939632 + RLTR22_Mur LTR ERVK 1435 1503 -345 1 1078 2216 151 11 14 chr3 64660151 64660520 -94939263 - Lx2 LINE L1 -8 6989 6622 1 1078 631 257 155 103 chr3 64660520 64660666 -94939117 + RLTR22_Mur LTR ERVK 1504 1635 -213 1 1078 324 235 156 35 chr3 64660701 64660842 -94938941 + RLTR21 LTR ERVK 1342 1499 -73 1 1078 243 205 214 12 chr3 64661275 64661359 -94938424 + MT2A LTR ERVL 427 527 -6 1 1078 185 0 0 39 chr3 64661372 64661398 -94938385 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 1 1078 1637 216 93 5 chr3 64661888 64662275 -94937508 - MTC LTR MaLR 0 421 1 1 1078 645 353 5 0 chr3 64663219 64663406 -94936377 - ORR1E LTR MaLR -159 200 13 1 1078 2542 317 74 27 chr3 64663418 64664170 -94935613 - MTE-int LTR MaLR -49 1531 746 1 1078 1005 181 26 44 chr3 64664170 64664396 -94935387 - URR1B DNA MER1_type -3 222 1 1 1078 2542 317 74 27 chr3 64664396 64664537 -94935246 - MTE-int LTR MaLR -835 745 596 1 1078 443 346 42 49 chr3 64665276 64665419 -94934364 + RSINE1 SINE B4 2 143 -22 1 1078 224 344 129 84 chr3 64665419 64665454 -94934329 + B3 SINE B2 1 186 -30 1 1078 248 245 0 0 chr3 64666084 64666137 -94933646 - ID4 SINE ID -2 81 29 1 1078 395 257 97 9 chr3 64666177 64666291 -94933492 - MTE-int LTR MaLR -857 723 600 1 1078 752 286 21 11 chr3 64666638 64666921 -94932862 - Lx7 LINE L1 -1814 5882 5597 1 1078 375 317 83 46 chr3 64666933 64667498 -94932285 - L1M2 LINE L1 -3014 3129 2544 1 1078 28 29 0 0 chr3 64667615 64667650 -94932133 + AT_rich Low_complexity Low_complexity 1 35 0 1 1078 275 181 0 65 chr3 64668403 64668480 -94931303 + C-rich Low_complexity Low_complexity 6 77 0 1 1078 925 272 140 24 chr3 64668623 64668957 -94930826 - MTE2b LTR MaLR 0 379 36 1 1078 305 345 14 48 chr3 64668966 64669176 -94930607 - L1MDa LINE L1 -4733 1900 1698 1 1078 499 327 25 43 chr3 64669217 64669380 -94930403 - RSINE1 SINE B4 0 165 6 1 1078 731 287 9 4 chr3 64670326 64670557 -94929226 - Lx7 LINE L1 -7163 565 334 1 1078 958 162 55 10 chr3 64670616 64670815 -94928968 + RLTR47_MM LTR ERV1 240 447 -85 1 1078 540 0 0 0 chr3 64670817 64670877 -94928906 + (GA)n Simple_repeat Simple_repeat 1 60 0 1 1078 250 271 82 0 chr3 64671107 64671192 -94928591 - L1_Mur3 LINE L1 -7168 544 453 1 1078 367 214 125 0 chr3 64671187 64671299 -94928484 + L1_Mur3 LINE L1 933 1058 -6654 1 1078 510 283 134 23 chr3 64671315 64671622 -94928161 - L1_Mur3 LINE L1 -7289 423 83 1 1078 213 265 132 0 chr3 64671751 64671819 -94927964 + MIRb SINE MIR 89 165 -103 1 1078 1437 77 0 15 chr3 64671980 64672178 -94927605 + B2_Mm2 SINE B2 1 195 0 1 1078 216 108 55 110 chr3 64673282 64673428 -94926355 + CT-rich Low_complexity Low_complexity 3 140 0 1 1078 353 320 100 71 chr3 64673476 64673957 -94925826 - L1MEg LINE L1 -2140 4006 3512 1 1078 316 380 84 44 chr3 64674473 64674817 -94924966 - L1MEg LINE L1 -5658 584 227 1 1078 245 309 62 18 chr3 64674886 64674998 -94924785 + MARNA DNA Mariner 76 192 -394 1 1078 185 315 95 43 chr3 64675336 64675452 -94924331 + MIRb SINE MIR 92 213 -55 1 1078 500 267 25 0 chr3 64676134 64676254 -94923529 - RSINE1 SINE B4 -13 152 30 1 1078 737 188 0 75 chr3 64676736 64676897 -94922886 - B1_Mur4 SINE Alu 0 150 2 1 1078 694 214 74 68 chr3 64676897 64677073 -94922710 - B2_Mm2 SINE B2 -18 177 1 1 1078 1073 237 129 15 chr3 64677397 64677537 -94922246 + ORR1D1 LTR MaLR 3 166 -208 1 1078 939 101 0 0 chr3 64677537 64677696 -94922087 + (TC)n Simple_repeat Simple_repeat 2 160 0 1 1078 1073 237 129 15 chr3 64677696 64677889 -94921894 + ORR1D1 LTR MaLR 167 373 -1 1 1078 459 82 0 0 chr3 64679423 64679496 -94920287 + (TG)n Simple_repeat Simple_repeat 2 74 0 1 1078 735 60 0 0 chr3 64679498 64679598 -94920185 - L1_Mus1 LINE L1 -882 5754 5655 1 1078 6855 48 0 1 chr3 64679598 64680420 -94919363 + L1_Mus1 LINE L1 5744 6564 -3 1 1078 276 30 0 0 chr3 64680496 64680529 -94919254 + (TTG)n Simple_repeat Simple_repeat 1 33 0 1 1078 278 186 21 223 chr3 64681080 64681322 -94918461 - Lx7 LINE L1 -148 7548 7356 1 1078 405 204 32 11 chr3 64681374 64681468 -94918315 - Lx7 LINE L1 -329 7367 7272 1 1078 356 200 0 43 chr3 64682099 64682193 -94917590 + L1M4 LINE L1 4536 4625 -1521 1 1078 381 276 114 0 chr3 64682339 64682462 -94917321 - ORR1E LTR MaLR -221 138 2 1 1078 807 40 0 0 chr3 64683513 64683612 -94916171 + (GAAA)n Simple_repeat Simple_repeat 2 100 0 1 1078 972 105 0 0 chr3 64683613 64683756 -94916027 + (GGAAA)n Simple_repeat Simple_repeat 4 146 0 1 1078 312 200 15 15 chr3 64684221 64684238 -94915545 + Lx3C LINE L1 6178 6194 -782 1 1078 5361 82 25 29 chr3 64684238 64685008 -94914775 - Lx3_Mus LINE L1 0 7009 6243 1 1078 312 200 15 15 chr3 64685008 64685056 -94914727 + Lx3C LINE L1 6195 6243 -733 1 1078 1946 206 36 48 chr3 64685197 64685489 -94914294 + MTC LTR MaLR 6 300 -121 2 1078 7071 59 10 2 chr3 64685489 64686375 -94913408 - RLTR13B1 LTR ERVK 0 893 1 2 1078 1946 206 36 48 chr3 64686375 64686495 -94913288 + MTC LTR MaLR 301 413 -8 2 1078 22 0 0 0 chr3 64688139 64688161 -94911622 + AT_rich Low_complexity Low_complexity 1 22 0 2 1078 321 26 0 0 chr3 64688388 64688426 -94911357 + (TG)n Simple_repeat Simple_repeat 1 38 0 2 1078 486 0 0 0 chr3 64688426 64688479 -94911304 + (GA)n Simple_repeat Simple_repeat 1 54 0 2 1078 2726 284 74 18 chr3 64688480 64689449 -94910334 - Lx8 LINE L1 -187 7286 6263 2 1078 303 329 0 0 chr3 64689563 64689639 -94910144 - ID4 SINE ID -6 77 2 2 1078 523 258 196 33 chr3 64690064 64690248 -94909535 - B3 SINE B2 0 216 3 2 1078 585 0 0 0 chr3 64690412 64690477 -94909306 + (CTG)n Simple_repeat Simple_repeat 1 65 0 2 1078 2662 271 118 39 chr3 64690531 64691283 -94908500 - Lx8 LINE L1 -204 7269 6416 2 1078 378 0 0 0 chr3 64691283 64691325 -94908458 + (TG)n Simple_repeat Simple_repeat 2 43 0 2 1078 2662 271 118 39 chr3 64691325 64691631 -94908152 - Lx8 LINE L1 -1058 6415 6129 2 1078 3091 232 41 18 chr3 64691709 64692459 -94907324 - RMER1B Other Other -1 1065 15 2 1078 252 59 0 0 chr3 64692459 64692493 -94907290 + (TCC)n Simple_repeat Simple_repeat 3 36 0 2 1078 26 0 0 0 chr3 64692781 64692807 -94906976 + AT_rich Low_complexity Low_complexity 1 26 0 2 1078 481 269 19 9 chr3 64693377 64693587 -94906196 - L1M2 LINE L1 -2968 3175 2964 2 1078 221 214 0 0 chr3 64693627 64693669 -94906114 - ID4 SINE ID -40 43 2 2 1078 303 330 51 86 chr3 64693681 64693936 -94905847 - L1MC4 LINE L1 -5387 828 583 2 1078 31 44 0 0 chr3 64694155 64694200 -94905583 + AT_rich Low_complexity Low_complexity 1 45 0 2 1078 227 250 118 12 chr3 64694680 64694765 -94905018 + RMER4B LTR ERVK 429 522 -63 2 1078 513 211 25 42 chr3 64695055 64695174 -94904609 + B2_Mm2 SINE B2 53 169 -26 2 1078 369 0 0 0 chr3 64695174 64695215 -94904568 + (TAAA)n Simple_repeat Simple_repeat 1 41 0 2 1078 247 284 59 0 chr3 64695336 64695438 -94904345 + BC1_Mm scRNA scRNA 2 109 -43 2 1078 2139 191 21 12 chr3 64695459 64695888 -94903895 + L1_Mur3 LINE L1 540 972 -6756 2 1078 340 167 47 23 chr3 64695881 64695967 -94903816 + L1_Mur3 LINE L1 2332 2419 -3461 2 1078 306 0 0 0 chr3 64695985 64696019 -94903764 + (TG)n Simple_repeat Simple_repeat 1 34 0 2 1078 1589 209 89 11 chr3 64696019 64696401 -94903382 - RMER1B Other Other -33 1033 622 2 1078 410 284 68 68 chr3 64696424 64696643 -94903140 + RLTR15 LTR ERVK 49 267 -92 2 1078 671 149 0 22 chr3 64696652 64696789 -94902994 + Lx LINE L1 6521 6654 0 2 1078 22 35 0 0 chr3 64696850 64696879 -94902904 + AT_rich Low_complexity Low_complexity 1 29 0 2 1078 6505 156 24 14 chr3 64696898 64697899 -94901884 + L1_Mur3 LINE L1 3628 4628 -1252 2 1078 201 74 0 0 chr3 64697899 64697926 -94901857 + (CAA)n Simple_repeat Simple_repeat 3 29 0 2 1078 6505 156 24 14 chr3 64697926 64698234 -94901549 + L1_Mur3 LINE L1 4629 4948 -932 2 1078 304 327 18 18 chr3 64698550 64698662 -94901121 - Charlie5 DNA MER1_type -2512 112 1 2 1078 345 321 63 18 chr3 64699568 64699592 -94900191 - PB1D10 SINE Alu 0 117 96 2 1078 306 0 0 0 chr3 64699592 64699626 -94900157 + (CA)n Simple_repeat Simple_repeat 1 34 0 2 1078 345 321 63 18 chr3 64699626 64699712 -94900071 - PB1D10 SINE Alu -22 95 3 2 1078 4461 120 26 7 chr3 64699759 64700448 -94899335 + Lx3B LINE L1 6271 6972 -1 2 1078 585 0 0 0 chr3 64700634 64700699 -94899084 + (TAGA)n Simple_repeat Simple_repeat 2 66 0 2 1078 517 348 11 6 chr3 64700701 64700880 -94898903 + B4A SINE B4 107 286 -6 2 1078 830 181 0 0 chr3 64703852 64703990 -94895793 - B1_Mus1 SINE Alu -9 139 2 2 1078 958 256 128 14 chr3 64704230 64704511 -94895272 + MTD LTR MaLR 93 405 -14 2 1078 267 31 0 0 chr3 64705141 64705173 -94894610 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 2 1078 243 361 82 0 chr3 64705192 64705314 -94894469 + LTR33 LTR ERVL 47 178 -337 2 1078 255 214 0 0 chr3 64706452 64706508 -94893275 + L1M5 LINE L1 5758 5813 -360 2 1078 342 270 45 9 chr3 64706935 64707047 -94892736 + PB1D10 SINE Alu 1 116 -1 2 1078 361 158 0 0 chr3 64707265 64707322 -94892461 - MTC LTR MaLR -346 75 19 2 1078 297 75 0 0 chr3 64707322 64707362 -94892421 + (TAAA)n Simple_repeat Simple_repeat 4 43 0 2 1078 294 350 29 0 chr3 64708737 64708840 -94890943 + L2b LINE L2 3262 3367 -8 2 1078 2936 234 70 10 chr3 64709052 64709872 -94889911 - RCHARR1 DNA MER1_type 0 974 106 2 1078 3116 196 38 77 chr3 64709872 64710754 -94889029 + MYSERV6-int LTR ERVK 8093 8895 -64 2 1078 21 57 0 0 chr3 64711144 64711179 -94888604 + AT_rich Low_complexity Low_complexity 1 35 0 2 1078 12972 95 7 3 chr3 64711345 64713748 -94886035 - L1VL2 LINE L1 -632 2983 570 2 1078 320 211 13 0 chr3 64713748 64713824 -94885959 + MYSERV-int LTR ERVK 6451 6527 -23 2 1078 759 243 82 45 chr3 64713834 64714235 -94885548 + RMER4B LTR ERVK 6 418 -48 2 1078 431 340 44 0 chr3 64714956 64715159 -94884624 + L2a LINE L2 3211 3422 -4 2 1078 3461 229 106 19 chr3 64715304 64716203 -94883580 + RMER1A Other Other 73 684 -346 2 1078 228 35 0 0 chr3 64716203 64716232 -94883551 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 2 1078 3461 188 77 0 chr3 64716232 64716410 -94883373 + RMER1A Other Other 685 869 -161 2 1078 369 43 0 0 chr3 64716410 64716457 -94883326 + (TG)n Simple_repeat Simple_repeat 2 48 0 2 1078 3461 188 77 0 chr3 64716457 64716573 -94883210 + RMER1A Other Other 870 1022 -8 2 1078 232 238 82 12 chr3 64716587 64716672 -94883111 + Charlie16a DNA MER1_type 172 262 -80 2 1078 375 23 0 0 chr3 64717046 64717090 -94882693 + (TG)n Simple_repeat Simple_repeat 2 45 0 2 1078 24 0 0 0 chr3 64717177 64717201 -94882582 + AT_rich Low_complexity Low_complexity 1 24 0 2 1078 3158 60 0 2 chr3 64717205 64717608 -94882175 + L1Md_F2 LINE L1 6181 6582 0 2 1078 331 278 0 0 chr3 64717971 64718043 -94881740 + MIR SINE MIR 33 104 -104 2 1078 762 270 75 39 chr3 64718301 64718404 -94881379 + RLTR15 LTR ERVK 1 114 -245 2 1078 1017 60 0 0 chr3 64718404 64718537 -94881246 + (GA)n Simple_repeat Simple_repeat 2 134 0 2 1078 762 270 75 39 chr3 64718537 64718768 -94881015 + RLTR15 LTR ERVK 115 346 -13 2 1078 393 22 0 0 chr3 64720954 64721000 -94878783 + (TTGG)n Simple_repeat Simple_repeat 2 47 0 2 1078 1087 72 0 0 chr3 64721000 64721138 -94878645 - B1_Mm SINE Alu -8 139 2 2 1078 250 362 47 9 chr3 64722168 64722274 -94877509 - MER91C DNA Tip100 -23 117 8 2 1078 545 351 0 0 chr3 64722464 64722618 -94877165 + RSINE1 SINE B4 12 165 0 2 1078 282 333 12 12 chr3 64722770 64722855 -94876928 + MER20 DNA MER1_type 99 183 -36 2 1078 4006 168 8 30 chr3 64722856 64723720 -94876063 + L1Md_A LINE L1 446 1275 -5449 2 1078 588 94 0 0 chr3 64723709 64723794 -94875989 + L1Md_F2 LINE L1 5502 5586 -297 2 1078 7975 53 2 7 chr3 64723795 64724795 -94874988 + L1Md_F2 LINE L1 5588 6582 0 2 1078 252 0 0 0 chr3 64725047 64725075 -94874708 + (GA)n Simple_repeat Simple_repeat 1 28 0 2 1078 553 219 158 8 chr3 64725489 64725609 -94874174 - B1_Mur1 SINE Alu -5 144 7 2 1078 788 197 52 48 chr3 64726252 64726481 -94873302 + RMER1C Other Other 1100 1329 -13 2 1078 24 32 0 0 chr3 64726703 64726734 -94873049 + AT_rich Low_complexity Low_complexity 1 31 0 2 1078 375 101 69 42 chr3 64726738 64726810 -94872973 + L1_Rod LINE L1 5461 5534 -313 2 1078 36858 5 0 0 chr3 64726800 64731955 -94867828 + L1Md_A LINE L1 431 5586 -297 2 1078 9093 1 0 0 chr3 64731955 64732951 -94866832 + L1Md_A LINE L1 5587 6582 0 2 1078 262 217 23 35 chr3 64732956 64733042 -94866741 + L1_Rod LINE L1 5510 5594 -253 2 1078 304 319 43 32 chr3 64734101 64734219 -94865564 + PB1D9 SINE Alu 3 122 -27 2 1078 202 238 0 0 chr3 64734219 64734261 -94865522 + (CATATA)n Simple_repeat Simple_repeat 1 42 0 2 1078 1030 261 50 112 chr3 64734305 64734706 -94865077 + MTE2b LTR MaLR 2 377 -2 2 1078 620 234 117 0 chr3 64734708 64734862 -94864921 + MTE2b-int LTR MaLR 2 173 -1407 2 1078 181 390 113 21 chr3 64736710 64736896 -94862887 + MIRb SINE MIR 39 241 -27 2 1078 6272 209 56 7 chr3 64737920 64739285 -94860498 + Lx6 LINE L1 5803 7235 -225 2 1078 687 185 0 0 chr3 64739540 64739686 -94860097 + (TG)n Simple_repeat Simple_repeat 2 147 0 2 1078 32266 78 16 7 chr3 64739966 64745875 -94853908 + L1Md_F2 LINE L1 374 6339 -243 2 1078 476 231 81 34 chr3 64746376 64746524 -94853259 - MER5A1 DNA MER1_type -3 163 9 2 1078 2414 177 7 26 chr3 64747445 64747641 -94852142 + MTC LTR MaLR 1 196 -225 2 1078 2411 116 10 28 chr3 64747641 64748031 -94851752 + Lx LINE L1 6272 6654 0 2 1078 2414 177 7 26 chr3 64748031 64748263 -94851520 + MTC LTR MaLR 197 421 0 2 134 6053 84 27 4 chr3 64748715 64749869 -94849914 - Lx3_Mus LINE L1 -506 6503 5325 2 1079 207 111 28 0 chr3 64749957 64749993 -94849790 + (TATAA)n Simple_repeat Simple_repeat 3 39 0 2 1079 761 265 140 35 chr3 64749999 64750456 -94849327 + Charlie2b DNA MER1_type 2170 2674 -108 2 1079 469 360 159 21 chr3 64750665 64751130 -94848653 - MLT1H1 LTR MaLR 0 555 27 2 1079 224 186 0 17 chr3 64751213 64751273 -94848510 + (TA)n Simple_repeat Simple_repeat 1 59 0 2 1079 322 277 94 4 chr3 64751393 64751599 -94848184 - Lx8 LINE L1 -1802 5894 5671 2 1079 925 122 6 6 chr3 64753741 64753898 -94845885 + (GAAAA)n Simple_repeat Simple_repeat 3 159 0 2 1079 508 132 15 23 chr3 64754478 64754610 -94845173 + (TG)n Simple_repeat Simple_repeat 2 132 0 2 1079 860 307 51 15 chr3 64754632 64754906 -94844877 - B4A SINE B4 -2 290 7 2 1079 1714 249 24 38 chr3 64756813 64757234 -94842549 + MTD LTR MaLR 3 417 -2 2 1079 763 240 89 31 chr3 64757337 64757547 -94842236 + B4A SINE B4 2 224 -68 2 1079 677 300 37 95 chr3 64757547 64757820 -94841963 + B4A SINE B4 1 257 -35 2 1079 645 279 14 0 chr3 64757910 64758050 -94841733 + RSINE1 SINE B4 3 144 -21 2 1079 600 14 0 0 chr3 64758057 64758126 -94841657 + (TAGA)n Simple_repeat Simple_repeat 2 70 0 2 1079 944 291 47 13 chr3 64758486 64758786 -94840997 + Lx8 LINE L1 6189 6498 -975 2 1079 29 28 0 0 chr3 64758786 64758822 -94840961 + AT_rich Low_complexity Low_complexity 1 36 0 2 1079 39533 4 0 0 chr3 64758822 64764967 -94834816 - L1Md_A LINE L1 -1 6581 436 3 1079 234 62 0 0 chr3 64764975 64765007 -94834776 + (TTA)n Simple_repeat Simple_repeat 2 33 0 3 1079 647 281 78 65 chr3 64765012 64765126 -94834657 + Lx8 LINE L1 6513 6626 -847 2 1079 1588 178 126 6 chr3 64765126 64765460 -94834323 + ORR1D1 LTR MaLR 1 374 0 3 1079 647 281 78 65 chr3 64765460 64765538 -94834245 + Lx8 LINE L1 6627 6718 -755 2 1079 2833 44 9 0 chr3 64765538 64765881 -94833902 + ORR1A1 LTR MaLR 1 346 0 3 1079 647 281 78 65 chr3 64765881 64765980 -94833803 + Lx8 LINE L1 6719 6809 -664 2 1079 1564 215 98 5 chr3 64765993 64766362 -94833421 - MTD LTR MaLR -14 405 3 3 1079 1583 273 110 30 chr3 64766369 64766980 -94832803 + Lx8 LINE L1 6812 7471 -2 2 1079 544 315 81 5 chr3 64769038 64769236 -94830547 - MLT1J1 LTR MaLR -231 213 1 3 1079 461 47 16 0 chr3 64770028 64770092 -94829691 + (TG)n Simple_repeat Simple_repeat 2 66 0 3 1079 474 65 0 0 chr3 64770534 64770596 -94829187 + (GA)n Simple_repeat Simple_repeat 2 63 0 3 1079 903 19 0 0 chr3 64770596 64770701 -94829082 + (GGAA)n Simple_repeat Simple_repeat 4 108 0 3 1079 1233 113 17 0 chr3 64770762 64770939 -94828844 + B2_Mm2 SINE B2 2 181 -14 3 1079 24 0 0 0 chr3 64770950 64770974 -94828809 + AT_rich Low_complexity Low_complexity 1 24 0 3 1079 423 367 71 0 chr3 64771595 64771889 -94827894 + Lx8 LINE L1 6984 7298 -175 3 1079 243 0 0 0 chr3 64771898 64771925 -94827858 + (CAGA)n Simple_repeat Simple_repeat 2 28 0 3 1079 321 296 43 36 chr3 64771926 64772066 -94827717 + HAL1-3A_ME LINE L1 1978 2118 -740 3 1079 269 254 26 17 chr3 64772123 64772239 -94827544 + L1MB5 LINE L1 5191 5307 -839 3 1079 225 173 36 71 chr3 64772408 64772464 -94827319 - Tigger10 DNA Tigger -648 1195 1142 3 1079 365 309 52 16 chr3 64772677 64772868 -94826915 - L1MA5 LINE L1 -394 5906 5709 3 1079 461 311 61 47 chr3 64772919 64773327 -94826456 + L1MB5 LINE L1 5744 6157 -17 3 1079 15556 8 0 0 chr3 64773534 64776065 -94823718 - L1Md_A LINE L1 0 6582 4053 3 1079 1117 68 7 14 chr3 64776105 64776253 -94823530 - B1_Mus2 SINE Alu 0 147 1 3 1079 238 222 12 111 chr3 64776530 64776611 -94823172 + MT2B LTR ERVL 154 226 -375 3 1079 379 176 0 0 chr3 64776543 64776611 -94823172 + B1_Mus2 SINE Alu 2 69 -78 3 1079 318 272 24 12 chr3 64776611 64776623 -94823160 + B4A SINE B4 87 167 -125 3 1079 570 257 24 24 chr3 64776979 64777173 -94822610 + B4A SINE B4 5 246 -46 3 1079 406 358 55 68 chr3 64778194 64778503 -94821280 + MER113 DNA MER1_type 5 309 -212 3 1079 378 61 0 0 chr3 64778828 64778877 -94820906 + (TG)n Simple_repeat Simple_repeat 1 49 0 3 1079 2223 189 15 12 chr3 64779239 64779651 -94820132 - MTC LTR MaLR -8 413 1 3 1079 222 274 0 0 chr3 64779988 64780039 -94819744 + (GTGTG)n Simple_repeat Simple_repeat 5 55 0 3 1079 423 291 9 19 chr3 64780054 64780159 -94819624 - RSINE1 SINE B4 -17 148 45 3 1079 393 291 120 0 chr3 64780326 64780443 -94819340 + RSINE1 SINE B4 31 161 -4 3 1079 735 232 21 57 chr3 64780590 64780782 -94819001 - B3A SINE B2 -12 186 2 3 1079 336 267 91 8 chr3 64784038 64784159 -94815624 - MER58B DNA MER1_type 0 341 211 3 1079 600 236 56 21 chr3 64784161 64784291 -94815492 + B1_Mus1 SINE Alu 1 138 -10 3 1079 180 0 0 0 chr3 64784291 64784311 -94815472 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 3 1079 600 236 56 21 chr3 64784311 64784323 -94815460 + B1_Mus1 SINE Alu 139 148 0 3 1079 378 42 0 0 chr3 64784340 64784388 -94815395 + (GA)n Simple_repeat Simple_repeat 2 49 0 3 1079 549 44 0 0 chr3 64784389 64784457 -94815326 + (GGAA)n Simple_repeat Simple_repeat 4 71 0 3 1079 660 232 30 30 chr3 64784486 64784655 -94815128 - MER58B DNA MER1_type -167 174 6 3 1079 677 169 0 7 chr3 64785643 64785780 -94814003 + (CA)n Simple_repeat Simple_repeat 1 136 0 3 1079 197 65 32 0 chr3 64786558 64786589 -94813194 + (TAAG)n Simple_repeat Simple_repeat 4 35 0 3 1079 27 0 0 0 chr3 64788680 64788707 -94811076 + AT_rich Low_complexity Low_complexity 1 27 0 3 1079 1885 281 28 73 chr3 64788709 64789464 -94810319 - Lx8 LINE L1 0 7473 6753 3 1079 612 255 20 35 chr3 64789492 64789695 -94810088 + L1_Rod LINE L1 5648 5847 0 3 1079 327 262 9 28 chr3 64790019 64790125 -94809658 + Lx8 LINE L1 6665 6768 -705 3 1079 965 270 84 73 chr3 64790220 64790591 -94809192 - MTEa LTR MaLR 0 379 5 3 1079 1436 237 89 11 chr3 64790913 64791293 -94808490 - MTD LTR MaLR 0 419 10 3 1079 202 276 262 24 chr3 64792413 64792539 -94807244 + L2c LINE L2 3266 3426 0 3 1079 699 310 89 39 chr3 64792704 64793100 -94806683 + MLT2B4 LTR ERVL 33 565 -2 3 1079 180 0 0 0 chr3 64793444 64793464 -94806319 + (A)n Simple_repeat Simple_repeat 1 20 0 3 1079 905 82 0 16 chr3 64793474 64793598 -94806185 + B1_Mus1 SINE Alu 27 148 0 3 1079 571 362 114 15 chr3 64794338 64794672 -94805111 - L2a LINE L2 -5 3421 3055 3 1079 245 29 0 29 chr3 64794718 64794753 -94805030 + (TGAA)n Simple_repeat Simple_repeat 1 34 0 3 1079 1110 336 93 16 chr3 64794812 64795305 -94804478 - MER77 LTR ERVL -23 584 54 3 1079 250 276 0 0 chr3 64795335 64795393 -94804390 - L2a LINE L2 -505 2914 2857 3 1079 1046 294 56 59 chr3 64795486 64795841 -94803942 - ORR1E LTR MaLR -5 354 1 3 1079 386 343 196 35 chr3 64795864 64796323 -94803460 - L2a LINE L2 -744 2675 2143 3 1079 24 0 0 0 chr3 64796563 64796587 -94803196 + AT_rich Low_complexity Low_complexity 1 24 0 3 1079 1122 82 0 14 chr3 64796946 64797082 -94802701 + B1_Mus2 SINE Alu 2 137 -10 3 1079 294 29 0 0 chr3 64797082 64797117 -94802666 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 3 1079 1122 82 0 14 chr3 64797117 64797128 -94802655 + B1_Mus2 SINE Alu 138 147 0 3 1079 349 275 101 38 chr3 64802156 64802315 -94797468 - MER3 DNA MER1_type -33 176 8 3 1079 192 312 61 30 chr3 64803440 64803539 -94796244 + L2c LINE L2 3247 3348 -39 3 1079 1087 276 118 9 chr3 64803649 64803989 -94795794 - MTEa LTR MaLR -2 377 1 3 1079 803 230 29 48 chr3 64804197 64804407 -94795376 + B3 SINE B2 5 210 -6 3 1079 391 219 12 24 chr3 64804909 64804993 -94794790 - MTEb LTR MaLR -19 360 278 3 1079 309 89 0 0 chr3 64806444 64806489 -94793294 + (CCA)n Simple_repeat Simple_repeat 3 47 0 3 1079 351 0 0 0 chr3 64806489 64806528 -94793255 + (CAA)n Simple_repeat Simple_repeat 1 39 0 3 1079 841 186 7 0 chr3 64806747 64806892 -94792891 - B1_Mus1 SINE Alu 0 148 3 3 1079 991 307 105 39 chr3 64807696 64808121 -94791662 + MLT2B1 LTR ERVL 1 502 -54 3 1079 1014 289 27 27 chr3 64809097 64809464 -94790319 - ORR1D2 LTR MaLR -1 369 3 3 1079 277 336 0 79 chr3 64809630 64809756 -94790027 + B1F2 SINE Alu 1 116 -1 3 1079 376 239 23 93 chr3 64810657 64810786 -94788997 - MIRc SINE MIR -124 144 25 3 1079 255 390 43 0 chr3 64810777 64810918 -94788865 - MIRb SINE MIR -77 191 45 3 1079 459 0 0 0 chr3 64811445 64811496 -94788287 + (CA)n Simple_repeat Simple_repeat 2 52 0 3 1079 1014 297 34 20 chr3 64811497 64811847 -94787936 - MLT1B LTR MaLR -35 355 1 3 1079 231 317 113 27 chr3 64812809 64812994 -94786789 - L2 LINE L2 -835 2584 2384 3 1079 34541 62 4 15 chr3 64813687 64819792 -94779991 - L1Md_F2 LINE L1 -10 6572 542 3 1079 2558 58 65 0 chr3 64820509 64820834 -94778949 - ORR1A1 LTR MaLR 0 346 1 3 1079 298 369 22 57 chr3 64820931 64821158 -94778625 + MIR SINE MIR 43 261 -1 3 1079 1139 83 0 0 chr3 64821286 64821431 -94778352 + B1_Mus1 SINE Alu 2 146 -2 3 1079 1111 78 6 18 chr3 64821431 64821600 -94778183 + (GGAGAA)n Simple_repeat Simple_repeat 3 169 0 3 1079 265 387 0 0 chr3 64822450 64822543 -94777240 - MIR3 SINE MIR -115 93 1 3 1079 1264 236 139 19 chr3 64823301 64823405 -94776378 + MTD LTR MaLR 10 121 -298 3 1079 1020 129 0 0 chr3 64823405 64823575 -94776208 + (TC)n Simple_repeat Simple_repeat 2 171 0 3 1079 1264 236 139 19 chr3 64823575 64823829 -94775954 + MTD LTR MaLR 122 411 -8 3 1079 441 0 0 0 chr3 64824300 64824349 -94775434 + (TG)n Simple_repeat Simple_repeat 1 49 0 3 1079 403 297 80 0 chr3 64824634 64824772 -94775011 - B1F SINE Alu 0 149 1 3 1079 691 220 136 11 chr3 64825002 64825186 -94774597 - B3 SINE B2 -8 208 2 3 1079 195 342 0 37 chr3 64827645 64827727 -94772056 + MIRc SINE MIR 139 217 -51 3 1079 216 0 0 0 chr3 64828803 64828827 -94770956 + (CAT)n Simple_repeat Simple_repeat 2 25 0 3 1079 225 196 0 0 chr3 64828825 64828871 -94770912 + CT-rich Low_complexity Low_complexity 3 48 0 3 1079 1292 265 67 40 chr3 64828892 64829368 -94770415 - Lx6 LINE L1 -27 7433 6945 3 1079 1643 231 37 44 chr3 64829399 64829954 -94769829 + Lx6 LINE L1 5796 6374 -676 3 1079 240 276 114 29 chr3 64830243 64830418 -94769365 - L1MEc LINE L1 -3354 2965 2776 3 1079 1106 98 0 19 chr3 64830432 64830588 -94769195 + B2_Mm2 SINE B2 2 154 -41 3 1079 310 260 13 13 chr3 64830595 64830673 -94769110 - Lx5 LINE L1 -751 6299 6222 3 1079 27 29 0 0 chr3 64830699 64830733 -94769050 + AT_rich Low_complexity Low_complexity 1 34 0 3 1079 230 256 105 0 chr3 64830917 64831003 -94768780 - L1MEc LINE L1 -4532 1868 1774 3 1079 294 301 24 52 chr3 64831294 64831543 -94768240 - L1MEc LINE L1 -4877 1523 1282 3 1079 281 323 26 41 chr3 64831620 64831888 -94767895 - L1MC1 LINE L1 0 6333 6070 3 1079 1320 302 22 12 chr3 64831936 64832438 -94767345 + Lx8 LINE L1 6724 7230 -243 3 1079 32 26 0 0 chr3 64832617 64832656 -94767127 + AT_rich Low_complexity Low_complexity 1 39 0 3 1079 274 333 0 0 chr3 64833069 64833147 -94766636 + MER58A DNA MER1_type 82 159 -65 3 1079 695 160 104 0 chr3 64833237 64833362 -94766421 + B1_Mur4 SINE Alu 2 139 -11 3 1079 639 71 0 0 chr3 64833390 64833475 -94766308 + (GAAAA)n Simple_repeat Simple_repeat 2 86 0 3 1079 852 163 0 0 chr3 64833475 64833628 -94766155 + GA-rich Low_complexity Low_complexity 26 178 0 3 1079 342 241 0 65 chr3 64833629 64833722 -94766061 + polypurine Low_complexity Low_complexity 4 90 0 3 1079 555 16 0 0 chr3 64833722 64833786 -94765997 + (GAAAA)n Simple_repeat Simple_repeat 2 65 0 3 1079 461 194 326 41 chr3 64833915 64834087 -94765696 - RMER1B Other Other -430 636 416 3 1079 7526 63 0 0 chr3 64834680 64835699 -94764084 - L1Md_F2 LINE L1 -1280 4603 3585 4 1079 6973 70 1 0 chr3 64835699 64836649 -94763134 + L1Md_F2 LINE L1 4635 5585 -298 4 1079 8248 42 3 0 chr3 64836650 64837640 -94762143 + L1Md_F2 LINE L1 5587 6579 -3 4 1079 319 376 124 35 chr3 64839075 64839301 -94760482 + MLT1K LTR MaLR 22 267 -328 4 1079 414 0 0 0 chr3 64839714 64839760 -94760023 + (TG)n Simple_repeat Simple_repeat 1 46 0 4 1079 471 35 0 0 chr3 64840377 64840434 -94759349 + (TC)n Simple_repeat Simple_repeat 2 58 0 4 1079 315 0 0 0 chr3 64840434 64840469 -94759314 + (TA)n Simple_repeat Simple_repeat 2 36 0 4 1079 231 36 0 0 chr3 64840802 64840830 -94758953 + (A)n Simple_repeat Simple_repeat 1 28 0 4 1079 2011 166 44 8 chr3 64841129 64841494 -94758289 - ORR1C1 LTR MaLR 0 378 1 4 1079 2860 292 83 20 chr3 64842541 64843669 -94756114 + Lx8 LINE L1 6258 7456 -17 4 1079 357 247 13 0 chr3 64844716 64844793 -94754990 + ID4 SINE ID 5 82 -1 4 1079 230 180 0 57 chr3 64845073 64845126 -94754657 + B1_Mur4 SINE Alu 100 149 -1 4 1079 339 207 0 0 chr3 64845148 64845206 -94754577 + B3 SINE B2 5 62 -154 4 1079 270 325 25 38 chr3 64845225 64845305 -94754478 - RSINE1 SINE B4 -85 80 2 4 1079 198 143 0 0 chr3 64846045 64846080 -94753703 + (A)n Simple_repeat Simple_repeat 1 35 0 4 1079 785 363 104 50 chr3 64846888 64847549 -94752234 + MER21B LTR ERV1 44 740 -123 4 1079 938 253 93 71 chr3 64848523 64848598 -94751185 + MTE-int LTR MaLR 1171 1250 -330 4 1079 252 0 0 0 chr3 64848598 64848626 -94751157 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 4 1079 938 253 93 71 chr3 64848626 64848902 -94750881 + MTE-int LTR MaLR 1251 1529 -51 4 1079 1274 281 19 13 chr3 64848902 64849216 -94750567 + ORR1E LTR MaLR 4 319 -40 4 1079 1576 193 77 28 chr3 64849643 64850005 -94749778 + ORR1C2 LTR MaLR 5 384 0 4 1079 246 297 14 0 chr3 64850209 64850283 -94749500 + MADE2 DNA Mariner 2 76 -4 4 1079 192 400 20 40 chr3 64852833 64852932 -94746851 - MIRm SINE MIR -137 139 43 4 1079 262 378 69 7 chr3 64854165 64854309 -94745474 - RMER20A LTR ERVK 0 516 364 4 1079 198 0 0 0 chr3 64854330 64854352 -94745431 + (TGG)n Simple_repeat Simple_repeat 2 23 0 4 1079 701 201 15 35 chr3 64854455 64854618 -94745165 - RMER20B LTR ERVK -359 157 1 4 1079 323 261 54 0 chr3 64855434 64855564 -94744219 - L1MA6 LINE L1 -47 6253 6117 4 1079 418 229 19 19 chr3 64856305 64856420 -94743363 + PB1D10 SINE Alu 1 127 0 4 1079 229 300 106 18 chr3 64856700 64856917 -94742866 - HAL1 LINE L1 -419 2088 1853 4 1079 252 248 88 119 chr3 64856973 64857293 -94742490 - HAL1 LINE L1 -763 1744 1435 4 1079 571 313 76 24 chr3 64857300 64857588 -94742195 + Lx8 LINE L1 6989 7291 -182 4 1079 975 180 94 9 chr3 64858007 64858231 -94741552 - Lx3B LINE L1 0 6973 6731 4 1079 1518 88 0 27 chr3 64858204 64858427 -94741356 - Lx3B LINE L1 -506 6467 6251 4 1079 331 351 100 44 chr3 64858530 64858801 -94740982 - HAL1 LINE L1 -2205 302 17 4 1079 491 264 241 0 chr3 64858876 64859050 -94740733 - B3 SINE B2 0 216 1 4 1079 203 292 31 0 chr3 64859055 64859120 -94740663 - L2 LINE L2 -600 2819 2753 4 1079 197 331 29 44 chr3 64860256 64860392 -94739391 - L2 LINE L2 -883 2536 2403 4 1079 256 328 170 10 chr3 64860973 64861167 -94738616 - L2 LINE L2 -1981 1438 1214 4 1079 999 48 0 0 chr3 64861173 64861298 -94738485 + (GA)n Simple_repeat Simple_repeat 2 126 0 4 1079 1074 253 133 6 chr3 64861440 64861794 -94737989 - Lx6 LINE L1 -1198 6262 5864 4 1079 9012 188 29 13 chr3 64861792 64862567 -94737216 - L1_Mur3 LINE L1 -2273 3607 2823 4 1079 2178 124 9 3 chr3 64862567 64862890 -94736893 - ORR1A2 LTR MaLR -2 325 1 4 1079 9012 188 29 13 chr3 64862890 64863066 -94736717 - L1_Mur3 LINE L1 -3058 2822 2655 4 1079 543 16 0 0 chr3 64863066 64863130 -94736653 + (TG)n Simple_repeat Simple_repeat 2 65 0 4 1079 9012 188 29 13 chr3 64863130 64864265 -94735518 - L1_Mur3 LINE L1 -3226 2654 1490 4 1079 261 0 0 0 chr3 64864265 64864294 -94735489 + (TTC)n Simple_repeat Simple_repeat 3 31 0 4 1079 890 138 11 11 chr3 64864294 64864470 -94735313 + CT-rich Low_complexity Low_complexity 3 178 0 4 1079 339 170 0 0 chr3 64864470 64864523 -94735260 + polypyrimidine Low_complexity Low_complexity 1 53 0 4 1079 1203 201 70 51 chr3 64864523 64865231 -94734552 - L1_Mur3 LINE L1 -4341 1539 893 4 1079 238 247 38 38 chr3 64865948 64866028 -94733755 + MurSatRep1 Unknown Unknown 205 284 -1853 4 1079 4580 150 122 71 chr3 64867198 64867572 -94732211 + RLTR25B LTR ERVK 1 325 -703 4 1079 1156 69 0 0 chr3 64867572 64867716 -94732067 + B1_Mm SINE Alu 2 145 -2 4 1079 702 35 0 0 chr3 64867718 64867803 -94731980 + (TCTA)n Simple_repeat Simple_repeat 2 86 0 4 1079 4580 150 122 71 chr3 64867803 64868402 -94731381 + RLTR25B LTR ERVK 326 1027 -1 4 1079 2779 67 6 0 chr3 64869931 64870275 -94729508 + ORR1A0 LTR MaLR 1 346 0 4 1079 324 0 0 0 chr3 64870633 64870669 -94729114 + (CA)n Simple_repeat Simple_repeat 2 37 0 4 1079 2906 142 52 10 chr3 64871194 64871267 -94728516 - RLTR11A LTR ERVK 0 528 448 4 1079 324 0 0 0 chr3 64871267 64871303 -94728480 + (CA)n Simple_repeat Simple_repeat 2 37 0 4 1079 2906 142 52 10 chr3 64871303 64871727 -94728056 - RLTR11A LTR ERVK -81 447 11 4 1079 1399 87 0 5 chr3 64872248 64872434 -94727349 - B2_Mm2 SINE B2 -7 188 4 4 1079 643 245 14 0 chr3 64872450 64872589 -94727194 + B1_Mus1 SINE Alu 3 143 -5 4 1079 220 219 0 0 chr3 64872589 64872630 -94727153 + GA-rich Low_complexity Low_complexity 1 41 0 4 1079 658 328 69 16 chr3 64873788 64874033 -94725750 + RLTR20D LTR ERVK 1 258 -310 4 1079 297 261 100 14 chr3 64874043 64874113 -94725670 + RLTR20D LTR ERVK 480 555 -23 4 1079 591 380 65 24 chr3 64874295 64874665 -94725118 - LTR16C LTR ERVL -37 452 68 4 1079 403 58 58 0 chr3 64875150 64875219 -94724564 + (TCTCTG)n Simple_repeat Simple_repeat 6 78 0 4 1079 343 286 101 111 chr3 64875237 64875744 -94724039 - HAL1 LINE L1 -762 1745 1244 4 1079 405 350 88 55 chr3 64875876 64876148 -94723635 - HAL1 LINE L1 -1610 897 617 4 1079 3284 59 23 9 chr3 64876601 64877030 -94722753 - L1Md_F2 LINE L1 -13 6569 6135 4 1079 2703 43 0 0 chr3 64877111 64877439 -94722344 - L1Md_T LINE L1 0 6582 6255 4 1079 289 298 83 29 chr3 64877572 64877776 -94722007 - L1MD2 LINE L1 -2 6357 6143 4 1079 207 100 0 0 chr3 64877941 64877971 -94721812 + (CTTG)n Simple_repeat Simple_repeat 2 31 0 4 1079 396 311 125 58 chr3 64879023 64879383 -94720400 - MLT1H LTR MaLR -5 484 138 4 1080 234 333 37 0 chr3 64881089 64881170 -94718613 - L2 LINE L2 -1365 2054 1971 4 1080 185 380 101 0 chr3 64881240 64881419 -94718364 - L2 LINE L2 -1598 1821 1625 4 1080 366 274 10 40 chr3 64882176 64882275 -94717508 + ID_B1 SINE B4 81 176 -48 4 1080 360 318 27 27 chr3 64882180 64882290 -94717493 + PB1D7 SINE Alu 4 113 -7 4 1080 4361 121 17 65 chr3 64883795 64884627 -94715156 + RMER17D2 LTR ERVK 18 809 0 4 1080 889 76 8 8 chr3 64884722 64884854 -94714929 + (GAAA)n Simple_repeat Simple_repeat 2 133 0 4 1080 625 80 0 29 chr3 64884855 64884958 -94714825 + (GGAA)n Simple_repeat Simple_repeat 1 100 0 4 1080 1945 81 56 66 chr3 64885134 64885439 -94714344 - ORR1A2 LTR MaLR 0 327 26 4 1080 201 364 64 64 chr3 64886291 64886573 -94713210 + L2c LINE L2 3104 3385 -2 4 1080 666 269 137 0 chr3 64886954 64887188 -94712595 - Lx2B LINE L1 -4 6996 6731 4 1080 519 183 0 0 chr3 64887177 64887270 -94712513 + Lx2B LINE L1 6460 6552 -448 4 1080 911 163 24 6 chr3 64887566 64887733 -94712050 + ORR1A2 LTR MaLR 1 170 -176 4 1080 3365 146 11 16 chr3 64887732 64888288 -94711495 + RLTR1D LTR ERV1 37 589 -16 4 1080 1303 120 10 0 chr3 64888296 64888488 -94711295 + ORR1A2 LTR MaLR 126 319 -8 4 1080 393 314 73 30 chr3 64888772 64889063 -94710720 - MTEa LTR MaLR 0 379 33 4 1080 859 329 60 34 chr3 64889091 64889262 -94710521 - ORR1E-int LTR MaLR -39 1541 1364 4 1080 1256 55 7 0 chr3 64889262 64889408 -94710375 - B1_Mus2 SINE Alu 0 147 1 4 1080 859 329 60 34 chr3 64889408 64889474 -94710309 - ORR1E-int LTR MaLR -217 1363 1300 4 1080 210 37 0 0 chr3 64889474 64889501 -94710282 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 4 1080 859 329 60 34 chr3 64889501 64889677 -94710106 - ORR1E-int LTR MaLR -281 1299 1117 4 1080 718 264 0 0 chr3 64889818 64889962 -94709821 - B1_Mur1 SINE Alu 0 149 6 4 1080 443 328 114 95 chr3 64889962 64890434 -94709349 - ORR1E-int LTR MaLR -883 697 217 4 1080 440 302 40 0 chr3 64890453 64890579 -94709204 + ID_B1 SINE B4 91 221 -3 4 1080 732 292 5 0 chr3 64890585 64890777 -94709006 - ORR1E-int LTR MaLR -1387 193 1 4 1080 527 331 105 63 chr3 64890794 64891126 -94708657 - ORR1E LTR MaLR -11 348 3 4 1080 231 36 0 0 chr3 64891131 64891159 -94708624 + (TAAA)n Simple_repeat Simple_repeat 1 28 0 4 1080 332 299 92 17 chr3 64891612 64891731 -94708052 - B1F SINE Alu -19 130 3 4 1080 287 419 16 0 chr3 64892053 64892182 -94707601 - MLT1K LTR MaLR -359 236 106 4 1080 374 296 78 82 chr3 64892324 64892556 -94707227 - L3 LINE CR1 -104 4385 4155 4 1080 549 269 70 50 chr3 64893755 64894013 -94705770 - L1MB8 LINE L1 -1 7037 6775 4 1080 192 231 0 0 chr3 64894257 64894309 -94705474 + (TA)n Simple_repeat Simple_repeat 2 53 0 4 1080 228 329 14 0 chr3 64894391 64894461 -94705322 - ID4_ SINE ID -11 72 2 4 1080 591 290 98 42 chr3 64894873 64895392 -94704391 - L1MB8 LINE L1 -539 6505 5957 4 1080 743 281 133 41 chr3 64895732 64896222 -94703561 - L1MB8 LINE L1 -1349 5657 5123 4 1080 394 328 71 28 chr3 64896238 64896379 -94703404 - B1F1 SINE Alu 0 149 3 4 1080 450 239 86 0 chr3 64896417 64896534 -94703249 - PB1 SINE Alu 0 127 1 4 1080 237 253 181 44 chr3 64896573 64896755 -94703028 - L1MD LINE L1 -1905 4241 4035 4 1080 866 298 67 54 chr3 64896812 64897110 -94702673 - ORR1E LTR MaLR -57 302 1 4 1080 378 321 43 80 chr3 64897166 64897295 -94702488 - Lx8 LINE L1 -10 7463 7344 4 1080 387 0 0 0 chr3 64897295 64897338 -94702445 + (TG)n Simple_repeat Simple_repeat 2 44 0 4 1080 378 321 43 80 chr3 64897338 64897509 -94702274 - Lx8 LINE L1 -130 7343 7174 4 1080 590 312 137 50 chr3 64897631 64898012 -94701771 + MT2A LTR ERVL 15 428 -105 4 1080 31 44 0 0 chr3 64898109 64898154 -94701629 + AT_rich Low_complexity Low_complexity 1 45 0 4 1080 221 185 37 0 chr3 64898167 64898221 -94701562 + (CATATA)n Simple_repeat Simple_repeat 5 60 0 4 1080 1848 287 81 31 chr3 64898268 64898402 -94701381 - ORR1E-int LTR MaLR -546 1034 892 4 1080 270 0 0 0 chr3 64898402 64898432 -94701351 + (TC)n Simple_repeat Simple_repeat 1 30 0 4 1080 387 0 0 0 chr3 64898432 64898474 -94701309 + (CA)n Simple_repeat Simple_repeat 1 43 0 4 1080 1848 292 91 63 chr3 64898474 64899258 -94700525 - ORR1E-int LTR MaLR -689 891 3 4 1080 985 302 70 73 chr3 64899291 64899634 -94700149 - ORR1E LTR MaLR -17 342 1 4 1080 392 266 70 17 chr3 64899792 64899907 -94699876 - B4A SINE B4 -170 122 2 4 1080 260 250 12 62 chr3 64899915 64899996 -94699787 + ORR1E LTR MaLR 20 96 -263 4 1080 341 255 186 13 chr3 64900192 64900697 -94699086 - L1MB8 LINE L1 -3651 3683 2732 4 1080 325 262 136 0 chr3 64900804 64900907 -94698876 - PB1D10 SINE Alu 0 117 1 4 1080 492 302 76 84 chr3 64901886 64902230 -94697553 + MLT1B LTR MaLR 48 388 -2 4 1080 396 0 0 0 chr3 64903271 64903315 -94696468 + (TA)n Simple_repeat Simple_repeat 1 44 0 4 1080 1172 224 85 11 chr3 64904062 64904373 -94695410 + Lx3C LINE L1 6675 6975 -1 5 1080 323 225 165 55 chr3 64904938 64904978 -94694805 - L1MB1 LINE L1 0 6312 6254 5 1080 344 22 22 0 chr3 64904978 64905023 -94694760 + (TA)n Simple_repeat Simple_repeat 2 47 0 5 1080 379 235 156 59 chr3 64905023 64905121 -94694662 - L1MB1 LINE L1 -107 6077 6019 5 1080 582 54 0 0 chr3 64905121 64905195 -94694588 + (TTCC)n Simple_repeat Simple_repeat 3 76 0 5 1080 979 274 73 29 chr3 64905195 64905676 -94694107 - L1MB1 LINE L1 -166 6018 5536 5 1080 25 31 0 0 chr3 64905694 64905726 -94694057 + AT_rich Low_complexity Low_complexity 1 32 0 5 1080 210 37 0 0 chr3 64905901 64905928 -94693855 + (CA)n Simple_repeat Simple_repeat 1 27 0 5 1080 792 85 23 8 chr3 64905929 64906060 -94693723 + (GGAA)n Simple_repeat Simple_repeat 4 136 0 5 1080 190 132 0 36 chr3 64906102 64906157 -94693626 + T-rich Low_complexity Low_complexity 2 54 0 5 1080 242 275 71 27 chr3 64907151 64907263 -94692520 + Kanga1b DNA Tc2 458 574 -205 5 1080 213 39 0 0 chr3 64909178 64909204 -94690579 + (CACCC)n Simple_repeat Simple_repeat 1 26 0 5 1080 237 234 15 15 chr3 64909731 64909796 -94689987 - PB1D10 SINE Alu 0 117 53 5 1080 21 36 0 0 chr3 64909908 64909936 -94689847 + AT_rich Low_complexity Low_complexity 1 28 0 5 1080 1091 258 96 23 chr3 64909944 64910297 -94689486 - MLT1B LTR MaLR -10 380 2 5 1080 571 260 47 0 chr3 64916919 64917046 -94682737 - ETnERV2-int LTR ERVK -204 7202 7070 5 1080 264 324 9 0 chr3 64918357 64918465 -94681318 - L1MD2 LINE L1 -371 5988 5880 5 1080 519 17 0 0 chr3 64918914 64918974 -94680809 + (TG)n Simple_repeat Simple_repeat 1 60 0 5 1080 306 23 0 0 chr3 64919903 64919947 -94679836 + L1_Mus1 LINE L1 6524 6567 0 5 1080 198 118 0 0 chr3 64920196 64920230 -94679553 + (TAA)n Simple_repeat Simple_repeat 1 34 0 5 1080 196 391 86 10 chr3 64921542 64921751 -94678032 - L3b LINE CR1 -257 225 1 5 1080 828 177 28 2 chr3 64922145 64922323 -94677460 - B3 SINE B2 0 198 5 5 1080 217 282 13 13 chr3 64923255 64923334 -94676449 + B4 SINE B4 2 80 -212 5 1080 360 265 84 49 chr3 64923554 64923697 -94676086 - MLT1D LTR MaLR -183 322 175 5 1080 1038 293 55 50 chr3 64924832 64925234 -94674549 + MTD LTR MaLR 1 404 -15 5 1080 510 197 0 0 chr3 64926962 64927079 -94672704 + (TA)n Simple_repeat Simple_repeat 1 117 0 5 1080 197 277 44 44 chr3 64927487 64927555 -94672228 + L2b LINE L2 3308 3375 0 5 1080 528 100 0 0 chr3 64927896 64927976 -94671807 + (GA)n Simple_repeat Simple_repeat 2 81 0 5 1080 306 0 0 0 chr3 64928941 64928975 -94670808 + (CA)n Simple_repeat Simple_repeat 1 34 0 5 1080 454 319 102 0 chr3 64929713 64929929 -94669854 - L2a LINE L2 -4 3422 3185 5 1080 4786 277 60 10 chr3 64929970 64931327 -94668456 - Lx8 LINE L1 0 7473 6049 5 1080 240 252 59 8 chr3 64931599 64931704 -94668079 - Lx8 LINE L1 -1668 5976 5866 5 1080 484 389 26 16 chr3 64932045 64932238 -94667545 + B4A SINE B4 93 287 -5 5 1080 1136 33 6 89 chr3 64932658 64932826 -94666957 + L1Md_F2 LINE L1 6429 6582 0 5 1080 694 175 102 8 chr3 64932839 64932966 -94666817 + B1_Mus2 SINE Alu 1 139 -8 5 1080 360 0 0 0 chr3 64932966 64933006 -94666777 + (CAA)n Simple_repeat Simple_repeat 2 41 0 5 1080 288 0 0 0 chr3 64933006 64933038 -94666745 + (CA)n Simple_repeat Simple_repeat 1 32 0 5 1080 597 49 0 0 chr3 64933106 64933187 -94666596 + (TC)n Simple_repeat Simple_repeat 2 82 0 5 1080 647 317 101 19 chr3 64933260 64933527 -94666256 - B4A SINE B4 0 292 4 5 1080 1729 197 60 22 chr3 64935617 64935981 -94663802 - ORR1C1 LTR MaLR 0 378 1 5 1080 3341 68 8 0 chr3 64936082 64936479 -94663304 + MTB LTR MaLR 1 400 0 5 1080 720 293 0 70 chr3 64937127 64937314 -94662469 + B3A SINE B2 24 197 -1 5 1080 606 322 103 50 chr3 64937770 64938166 -94661617 + MLT1D LTR MaLR 86 502 -3 5 1080 228 278 13 77 chr3 64938447 64938525 -94661258 + L2c LINE L2 3288 3360 -27 5 1080 456 191 0 0 chr3 64938615 64938709 -94661074 + (TA)n Simple_repeat Simple_repeat 1 94 0 5 1080 216 67 0 0 chr3 64939920 64939950 -94659833 + (CA)n Simple_repeat Simple_repeat 1 30 0 5 1080 261 57 0 0 chr3 64939954 64939989 -94659794 + (TA)n Simple_repeat Simple_repeat 2 36 0 5 1080 231 170 0 0 chr3 64940031 64940078 -94659705 + (TG)n Simple_repeat Simple_repeat 2 48 0 5 1080 308 319 0 41 chr3 64940144 64940265 -94659518 - MIRc SINE MIR -39 229 114 5 1080 380 297 24 17 chr3 64940392 64940532 -94659251 + MIRc SINE MIR 10 159 -109 5 1080 239 258 204 51 chr3 64940535 64940731 -94659052 - LTR33 LTR ERVL -3 512 287 5 1080 7679 68 0 1 chr3 64941234 64942233 -94657550 - L1Md_T LINE L1 0 6582 5614 5 1080 294 29 0 0 chr3 64942664 64942699 -94657084 + (CA)n Simple_repeat Simple_repeat 1 35 0 5 1080 491 287 102 27 chr3 64943404 64943590 -94656193 - MER102a DNA MER1_type -8 322 123 5 1080 199 271 68 34 chr3 64943614 64943702 -94656081 + L2a LINE L2 3328 3418 -8 5 1080 196 307 79 13 chr3 64943846 64943922 -94655861 - MIRc SINE MIR -123 145 65 5 1080 874 246 24 19 chr3 64944497 64944704 -94655079 + B3 SINE B2 1 208 -8 5 1080 253 340 50 30 chr3 64945355 64945555 -94654228 + Tigger16a DNA Tigger 730 933 0 5 1080 314 306 30 10 chr3 64945673 64945772 -94654011 + MamRep137 DNA TcMar? 2 102 -342 5 1080 633 363 100 23 chr3 64946103 64946402 -94653381 - MER2 DNA MER2_type -9 336 15 5 1080 1127 257 89 31 chr3 64946682 64947031 -94652752 + MTE2a LTR MaLR 3 371 -8 5 1080 8171 56 1 11 chr3 64947353 64948413 -94651370 - L1Md_F2 LINE L1 0 6582 5527 5 1080 326 265 38 38 chr3 64948686 64948792 -94650991 + B4A SINE B4 55 160 -132 5 1080 273 284 0 0 chr3 64948895 64948997 -94650786 + (CA)n Simple_repeat Simple_repeat 1 102 0 5 1080 375 202 26 0 chr3 64950136 64950250 -94649533 + CT-rich Low_complexity Low_complexity 3 119 0 5 1080 398 303 222 14 chr3 64951009 64951571 -94648212 - L1M2 LINE L1 -2829 3314 2636 5 1080 5369 40 6 1 chr3 64951583 64952230 -94647553 + L1Md_F3 LINE L1 5902 6551 -33 5 1080 207 0 0 0 chr3 64952230 64952253 -94647530 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 5 1080 507 298 44 29 chr3 64952977 64953181 -94646602 - RLTR15 LTR ERVK -93 266 60 5 1080 419 260 10 10 chr3 64953733 64953834 -94645949 + PB1D7 SINE Alu 1 101 -19 5 1080 435 38 0 0 chr3 64953943 64953996 -94645787 + (TG)n Simple_repeat Simple_repeat 1 53 0 5 1080 567 341 58 47 chr3 64954068 64954431 -94645352 - L1MEb LINE L1 -5448 622 256 5 1080 526 290 134 45 chr3 64954569 64954850 -94644933 - LTR40c LTR ERVL -64 401 92 5 1080 338 152 76 0 chr3 64954850 64954929 -94644854 + L1Md_T LINE L1 6498 6582 0 5 1080 526 290 134 45 chr3 64954929 64954983 -94644800 - LTR40c LTR ERVL -374 91 37 5 1080 302 352 66 45 chr3 64956279 64956565 -94643218 + L2a LINE L2 3135 3426 0 5 1080 473 250 63 24 chr3 64956643 64956770 -94643013 + B1F2 SINE Alu 1 132 -17 5 1080 249 314 28 9 chr3 64956776 64956882 -94642901 + GA-rich Low_complexity Low_complexity 3 110 0 5 1080 28 48 0 0 chr3 64957024 64957066 -94642717 + AT_rich Low_complexity Low_complexity 1 42 0 5 1080 218 325 104 24 chr3 64959253 64959345 -94640438 - L3 LINE CR1 -882 3607 3508 5 1080 2194 61 35 14 chr3 64959345 64959629 -94640154 + L1Md_T LINE L1 6292 6581 -1 5 1080 218 325 104 24 chr3 64959629 64959700 -94640083 - L3 LINE CR1 -982 3507 3432 5 1080 237 33 0 0 chr3 64960419 64960449 -94639334 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 5 1080 516 16 0 0 chr3 64960477 64960538 -94639245 + (GTTTG)n Simple_repeat Simple_repeat 3 63 0 5 1080 279 278 0 14 chr3 64960879 64960952 -94638831 + ID2 SINE ID 2 73 -10 5 1080 186 339 48 48 chr3 64961247 64961371 -94638412 - L3 LINE CR1 -1321 3168 3045 5 1080 233 323 127 30 chr3 64961510 64961644 -94638139 + ID_B1 SINE B4 2 148 -76 5 1080 1922 284 160 29 chr3 64961696 64962465 -94637318 - MTE-int LTR MaLR -660 920 51 5 1080 1032 308 67 17 chr3 64962491 64962851 -94636932 - MTE2b LTR MaLR 0 379 2 5 1080 473 292 63 42 chr3 64962854 64962997 -94636786 + B4A SINE B4 147 292 0 5 1080 443 184 209 9 chr3 64963537 64963652 -94636131 - B1F SINE Alu -7 142 5 5 1080 26 74 0 0 chr3 64963688 64963742 -94636041 + AT_rich Low_complexity Low_complexity 1 54 0 5 1080 233 259 81 87 chr3 64963809 64963982 -94635801 + Charlie18a DNA MER1_type 165 336 -6 5 1080 365 301 64 80 chr3 64964954 64965142 -94634641 - MTEa LTR MaLR 0 379 195 5 1080 755 161 126 0 chr3 64965173 64965316 -94634467 - ORR1D2 LTR MaLR 0 370 210 5 1080 459 125 0 0 chr3 64966216 64966288 -94633495 + (TTTA)n Simple_repeat Simple_repeat 2 73 0 5 1080 851 198 153 11 chr3 64966289 64966478 -94633305 - B3 SINE B2 0 216 1 5 1080 365 256 39 16 chr3 64966797 64966924 -94632859 + GA-rich Low_complexity Low_complexity 2 131 0 5 1080 282 228 32 21 chr3 64967390 64967484 -94632299 + CT-rich Low_complexity Low_complexity 1 95 0 5 1080 239 250 176 20 chr3 64967627 64967729 -94632054 + MIRb SINE MIR 7 124 -144 5 1080 351 0 0 0 chr3 64968788 64968827 -94630956 + (CA)n Simple_repeat Simple_repeat 2 40 0 5 1080 21 0 0 0 chr3 64969293 64969314 -94630469 + AT_rich Low_complexity Low_complexity 1 21 0 5 1080 607 260 126 39 chr3 64969434 64969755 -94630028 + MTEa LTR MaLR 3 369 -10 5 1080 854 45 9 0 chr3 64969772 64969883 -94629900 + (GGAGA)n Simple_repeat Simple_repeat 2 113 0 5 1080 432 0 0 0 chr3 64969884 64969932 -94629851 + (GGAA)n Simple_repeat Simple_repeat 1 48 0 5 1080 2302 132 5 53 chr3 64971037 64971414 -94628369 - RLTR15 LTR ERVK 0 359 1 5 1080 3496 266 121 10 chr3 64971501 64972578 -94627205 - Lx8 LINE L1 -73 7400 6205 5 1080 450 0 0 0 chr3 64972580 64972630 -94627153 + (TC)n Simple_repeat Simple_repeat 2 51 0 6 1080 380 20 20 0 chr3 64972630 64972678 -94627105 + (TG)n Simple_repeat Simple_repeat 1 50 0 6 1080 1022 219 35 5 chr3 64972708 64972910 -94626873 + B3 SINE B2 2 209 -7 6 1080 28 0 0 0 chr3 64972917 64972945 -94626838 + AT_rich Low_complexity Low_complexity 1 28 0 6 1080 256 191 15 31 chr3 64972956 64973021 -94626762 + B3 SINE B2 152 215 -1 6 1080 1801 183 12 79 chr3 64973261 64973648 -94626135 + ORR1B1 LTR MaLR 31 387 -7 6 1080 308 24 0 24 chr3 64974564 64974606 -94625177 + (TTTTG)n Simple_repeat Simple_repeat 3 43 0 6 1080 225 83 0 0 chr3 64974913 64974949 -94624834 + (A)n Simple_repeat Simple_repeat 1 36 0 6 1080 225 307 170 20 chr3 64975897 64976050 -94623733 + MIRb SINE MIR 91 266 -2 6 1080 266 304 0 0 chr3 64976304 64976407 -94623376 + G-rich Low_complexity Low_complexity 1 103 0 6 1080 980 210 237 0 chr3 64976483 64976740 -94623043 - ORR1D2 LTR MaLR 0 370 53 6 1080 24 32 0 0 chr3 64977334 64977365 -94622418 + AT_rich Low_complexity Low_complexity 1 31 0 6 1080 209 311 84 9 chr3 64977389 64977496 -94622287 - L2a LINE L2 -39 3387 3273 6 1080 210 196 59 0 chr3 64978264 64978315 -94621468 + BC1_Mm scRNA scRNA 1 54 -98 6 1080 1476 253 97 3 chr3 64980055 64980427 -94619356 + MTD LTR MaLR 3 409 -10 6 1080 647 325 130 44 chr3 64980738 64981211 -94618572 - MLT1F2 LTR MaLR 0 560 5 6 1080 3912 76 0 94 chr3 64981866 64982432 -94617351 - L1Md_T LINE L1 -3 6579 6067 6 1080 2157 43 0 0 chr3 64982432 64982689 -94617094 + L1Md_T LINE L1 5823 6079 -503 6 1080 1399 41 12 12 chr3 64982847 64983020 -94616763 - L1_Mus1 LINE L1 -2 6565 6393 6 1080 1453 29 0 17 chr3 64983020 64983197 -94616586 + L1_Mus1 LINE L1 5837 6010 -557 6 1080 345 221 62 94 chr3 64984930 64985043 -94614740 - Charlie5 DNA MER1_type 0 2624 2521 6 1080 1655 209 59 17 chr3 64985043 64985399 -94614384 - ORR1D1 LTR MaLR -3 371 1 6 1080 345 221 62 94 chr3 64985399 64985445 -94614338 - Charlie5 DNA MER1_type -104 2520 2470 6 1080 264 360 18 0 chr3 64985709 64985820 -94613963 - Charlie5 DNA MER1_type -2511 113 1 6 1080 24 0 0 0 chr3 64986534 64986558 -94613225 + AT_rich Low_complexity Low_complexity 1 24 0 6 1080 210 279 105 26 chr3 64987273 64987387 -94612396 + MIRc SINE MIR 38 160 -108 6 1080 256 320 207 22 chr3 64987601 64987780 -94612003 + L2 LINE L2 2371 2582 -837 6 1080 290 322 99 29 chr3 64987786 64988029 -94611754 - LTR48 LTR ERV1 0 787 528 6 1080 1020 90 67 0 chr3 64988219 64988348 -94611435 + B1_Mm SINE Alu 1 138 -9 6 1080 314 23 23 0 chr3 64988348 64988391 -94611392 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 6 1080 25 0 0 0 chr3 64989071 64989096 -94610687 + AT_rich Low_complexity Low_complexity 1 25 0 6 1080 799 209 7 0 chr3 64989795 64989934 -94609849 + B1_Mur1 SINE Alu 3 142 -7 6 1080 326 204 11 0 chr3 64990235 64990323 -94609460 + (CA)n Simple_repeat Simple_repeat 1 89 0 6 1080 695 247 64 61 chr3 64990378 64990708 -94609075 - RMER15 LTR ERVL -153 422 1 6 1080 235 291 55 55 chr3 64990977 64991068 -94608715 + MIRc SINE MIR 5 95 -173 6 1080 278 252 98 105 chr3 64991349 64991482 -94608301 + MLT1A1 LTR MaLR 248 379 -29 6 1080 753 167 0 53 chr3 64992560 64992750 -94607033 + GA-rich Low_complexity Low_complexity 1 180 0 6 1080 25 0 0 0 chr3 64993149 64993174 -94606609 + AT_rich Low_complexity Low_complexity 1 25 0 6 1080 38809 30 0 0 chr3 64993305 65000000 -94599783 - L1Md_T LINE L1 0 6585 1 6 1080 4297 40 8 12 chr3 65000000 65001440 -94598343 - L1Md_Gf LINE L1 -5918 604 1 1 1080 21 57 0 0 chr3 65001548 65001583 -94598200 + AT_rich Low_complexity Low_complexity 1 35 0 2 1080 183 293 0 0 chr3 65001875 65001916 -94597867 + L2b LINE L2 3291 3331 -44 3 1080 216 0 0 0 chr3 65002603 65002627 -94597156 + (CA)n Simple_repeat Simple_repeat 2 25 0 4 1080 1329 197 97 31 chr3 65002776 65003127 -94596656 - ORR1D1 LTR MaLR 0 374 1 5 1080 1850 184 68 100 chr3 65003130 65003176 -94596607 - MT2A LTR ERVL 0 533 488 6 1080 225 0 0 0 chr3 65003176 65003201 -94596582 + (CA)n Simple_repeat Simple_repeat 2 26 0 7 1080 405 0 0 0 chr3 65003201 65003245 -94596538 + (TA)n Simple_repeat Simple_repeat 1 45 0 8 1080 1850 184 68 100 chr3 65003245 65003728 -94596055 - MT2A LTR ERVL -46 487 21 6 1080 1974 46 0 0 chr3 65004063 65004338 -94595445 + L1Md_A LINE L1 6344 6582 0 9 1080 183 42 0 0 chr3 65004356 65004380 -94595403 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1 1080 243 0 0 0 chr3 65004489 65004516 -94595267 + (A)n Simple_repeat Simple_repeat 1 27 0 1 1080 1151 175 15 0 chr3 65004888 65005088 -94594695 - B3 SINE B2 -10 206 4 1 1080 320 344 15 15 chr3 65005229 65005359 -94594424 + Charlie12 DNA MER1_type 1 130 -2743 1 1080 437 314 75 0 chr3 65005403 65005562 -94594221 - B4A SINE B4 -16 276 106 1 1080 2106 149 67 3 chr3 65006105 65006448 -94593335 + ORR1B2 LTR MaLR 3 367 0 1 1080 195 69 0 0 chr3 65006716 65006745 -94593038 + (GA)n Simple_repeat Simple_repeat 2 30 0 1 1080 242 360 18 0 chr3 65007307 65007421 -94592362 + Tigger5 DNA MER2_type 2291 2406 0 1 1080 235 292 56 19 chr3 65007758 65007866 -94591917 + MIRb SINE MIR 75 186 -82 1 1080 226 235 0 19 chr3 65008135 65008173 -94591610 + polypyrimidine Low_complexity Low_complexity 14 51 0 1 1080 648 119 0 0 chr3 65008173 65008291 -94591492 + (TG)n Simple_repeat Simple_repeat 2 119 0 2 1080 226 235 0 19 chr3 65008291 65008304 -94591479 + polypyrimidine Low_complexity Low_complexity 1 13 0 2 1080 22 35 0 0 chr3 65008639 65008668 -94591115 + AT_rich Low_complexity Low_complexity 1 29 0 2 1080 280 311 94 7 chr3 65009037 65009186 -94590597 - MER5A DNA MER1_type -3 186 25 2 1080 2914 275 77 52 chr3 65010258 65011298 -94588485 - Lx8 LINE L1 -174 7299 6234 2 16 5549 161 102 12 chr3 65011312 65012496 -94587287 - L1_Mur2 LINE L1 -1916 3961 2671 2 1081 216 0 0 0 chr3 65012819 65012843 -94586940 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 2 1081 207 0 0 0 chr3 65012848 65012871 -94586912 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 2 1081 211 250 0 0 chr3 65014252 65014300 -94585483 + L2b LINE L2 3317 3364 -11 2 1081 1897 125 85 7 chr3 65014447 65014752 -94585031 - ORR1A4 LTR MaLR 0 329 1 2 1081 542 271 54 22 chr3 65015038 65015223 -94584560 - L2a LINE L2 -1 3425 3235 3 1081 288 130 0 0 chr3 65015587 65015633 -94584150 + (CCCCCA)n Simple_repeat Simple_repeat 1 46 0 3 1081 1182 235 97 29 chr3 65015963 65016313 -94583470 + ORR1D1 LTR MaLR 1 374 0 3 1081 240 312 12 0 chr3 65016560 65016640 -94583143 - ID4 SINE ID 0 83 3 3 1081 231 114 0 0 chr3 65019089 65019124 -94580659 + (A)n Simple_repeat Simple_repeat 1 35 0 3 1081 1284 100 10 21 chr3 65020180 65020374 -94579409 - B2_Mm2 SINE B2 -3 192 1 3 1081 473 247 43 43 chr3 65021562 65021723 -94578060 + MER5A DNA MER1_type 4 164 -25 3 1081 626 240 32 69 chr3 65021822 65022010 -94577773 + MER58A DNA MER1_type 1 181 -43 3 1081 682 22 11 0 chr3 65023854 65023943 -94575840 + L1Md_A LINE L1 6492 6581 -1 3 1081 500 248 6 94 chr3 65024365 65024525 -94575258 + B1_Mur1 SINE Alu 3 148 -1 3 1081 495 0 0 0 chr3 65024525 65024580 -94575203 + (TAGA)n Simple_repeat Simple_repeat 4 58 0 4 1081 342 362 51 11 chr3 65025154 65025428 -94574355 - L1M5 LINE L1 -2355 3791 3507 4 1081 182 315 53 21 chr3 65025986 65026080 -94573703 - L2c LINE L2 -250 3137 3041 4 1081 188 350 58 0 chr3 65026167 65026287 -94573496 + MIRb SINE MIR 103 229 -39 4 1081 333 0 0 0 chr3 65028501 65028538 -94571245 + (TG)n Simple_repeat Simple_repeat 2 38 0 4 1081 801 314 126 50 chr3 65029329 65029946 -94569837 - Lx8 LINE L1 -10 7463 6800 4 1081 261 139 233 14 chr3 65029965 65030038 -94569745 - ORR1D2 LTR MaLR -38 332 244 4 1081 288 0 0 0 chr3 65030183 65030215 -94569568 + (TTTG)n Simple_repeat Simple_repeat 4 35 0 4 1081 386 227 0 22 chr3 65030291 65030381 -94569402 - MTD LTR MaLR -106 313 226 4 1081 747 270 61 13 chr3 65030926 65031155 -94568628 - MTD LTR MaLR -179 240 1 4 1081 543 31 0 0 chr3 65031750 65031815 -94567968 + (TTCC)n Simple_repeat Simple_repeat 3 67 0 4 1081 3285 112 55 32 chr3 65031816 65032341 -94567442 - Lx2B LINE L1 -18 6982 6446 5 1081 181 320 120 44 chr3 65032367 65032550 -94567233 + MIRb SINE MIR 26 222 -46 5 1081 21 0 0 0 chr3 65033212 65033233 -94566550 + AT_rich Low_complexity Low_complexity 1 21 0 5 1081 3246 125 17 58 chr3 65033988 65034589 -94565194 + RMER4B LTR ERVK 1 576 -9 5 1081 819 101 0 0 chr3 65034843 65034962 -94564821 + (GAA)n Simple_repeat Simple_repeat 3 121 0 5 1081 243 318 60 13 chr3 65035476 65035626 -94564157 + L2 LINE L2 2718 2874 -545 5 1081 227 360 86 17 chr3 65037946 65038062 -94561721 - MamGypLTR2c LTR Gypsy -694 374 251 5 1081 325 292 0 78 chr3 65038536 65038651 -94561132 - PB1D10 SINE Alu -7 110 5 5 1081 555 142 0 0 chr3 65038667 65038787 -94560996 + (TG)n Simple_repeat Simple_repeat 2 121 0 5 1081 219 114 0 0 chr3 65038788 65038823 -94560960 + (GA)n Simple_repeat Simple_repeat 2 36 0 5 1081 337 278 66 46 chr3 65039215 65039366 -94560417 - RLTR14 LTR ERV1 0 382 229 6 1081 1709 172 0 3 chr3 65041528 65041820 -94557963 - L1_Mm LINE L1 -775 5108 4818 6 1081 7631 93 36 5 chr3 65041807 65043310 -94556473 + L1_Mus4 LINE L1 5092 6636 0 6 1081 484 266 0 0 chr3 65043360 65043473 -94556310 + PB1D10 SINE Alu 5 117 0 6 1081 352 250 13 0 chr3 65043647 65043723 -94556060 - ID4 SINE ID -5 78 2 6 1081 624 116 0 0 chr3 65044022 65044117 -94555666 + (TCC)n Simple_repeat Simple_repeat 2 96 0 6 1081 1081 65 0 0 chr3 65044117 65044255 -94555528 - B1_Mus1 SINE Alu -6 142 5 6 1081 184 255 0 0 chr3 65044281 65044328 -94555455 + L2c LINE L2 3101 3147 -240 6 1081 302 247 62 0 chr3 65046683 65046764 -94553019 - L1MC4a LINE L1 -1451 6431 6346 6 1081 252 86 0 0 chr3 65047059 65047094 -94552689 + (TTCC)n Simple_repeat Simple_repeat 1 35 0 6 1081 1246 271 72 42 chr3 65047094 65047524 -94552259 - Lx8 LINE L1 -50 7423 6993 7 1081 423 119 0 0 chr3 65047524 65047591 -94552192 + (CA)n Simple_repeat Simple_repeat 1 67 0 7 1081 1246 271 72 42 chr3 65047591 65047661 -94552122 - Lx8 LINE L1 -481 6992 6908 7 1081 1653 276 60 57 chr3 65047700 65048402 -94551381 - L1ME1 LINE L1 -121 6058 5355 7 1081 4810 38 3 2 chr3 65048499 65049075 -94550708 - L1Md_F2 LINE L1 -2 6580 6004 7 1081 2443 25 0 0 chr3 65049075 65049352 -94550431 - L1Md_F2 LINE L1 -683 5899 5623 7 1081 1335 293 84 17 chr3 65049421 65049945 -94549838 - L1MC LINE L1 -1064 5082 4524 7 1081 24 53 0 0 chr3 65050079 65050117 -94549666 + AT_rich Low_complexity Low_complexity 1 38 0 7 1081 469 348 19 0 chr3 65050117 65050272 -94549511 - RSINE1 SINE B4 -4 161 4 7 1081 528 283 11 11 chr3 65050272 65050458 -94549325 - L1MD LINE L1 -1817 4329 4144 7 1081 1851 49 0 9 chr3 65050784 65051010 -94548773 - Lx LINE L1 -826 5810 5587 7 1081 5744 105 16 18 chr3 65051012 65051859 -94547924 + Lx LINE L1 5808 6653 -1 7 1081 3888 65 29 51 chr3 65051988 65052541 -94547242 + L1_Mus2 LINE L1 6026 6566 0 7 1081 458 289 85 54 chr3 65054123 65054383 -94545400 - MER21B LTR ERV1 -125 738 471 8 1081 24 0 0 0 chr3 65054847 65054871 -94544912 + AT_rich Low_complexity Low_complexity 1 24 0 8 1081 207 357 0 0 chr3 65054937 65055007 -94544776 + (CA)n Simple_repeat Simple_repeat 1 70 0 8 1081 983 152 12 0 chr3 65055030 65055195 -94544588 - B2_Mm2 SINE B2 -27 168 2 8 1081 953 275 99 25 chr3 65055292 65055695 -94544088 - Charlie4a DNA MER1_type -44 464 32 8 1081 1937 271 67 24 chr3 65057192 65057762 -94542021 - Lx4B LINE L1 -22 7028 6455 8 1081 187 29 27 54 chr3 65057762 65057799 -94541984 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 8 1081 23347 186 30 28 chr3 65057799 65063518 -94536265 - Lx4B LINE L1 -713 6747 888 8 1081 207 135 0 51 chr3 65063834 65063873 -94535910 + G-rich Low_complexity Low_complexity 3 39 0 8 1081 189 333 0 17 chr3 65063966 65064024 -94535759 + L2b LINE L2 3107 3163 -212 8 1081 306 135 191 0 chr3 65064073 65064162 -94535621 - Lx9 LINE L1 -26 7618 7513 8 1081 426 20 0 0 chr3 65064169 65064220 -94535563 + (CA)n Simple_repeat Simple_repeat 2 52 0 9 1081 844 161 43 18 chr3 65064226 65064390 -94535393 - Lx9 LINE L1 -193 7451 7284 8 1081 513 265 239 15 chr3 65064445 65064713 -94535070 - MER57C2 LTR ERV1 -9 425 98 9 1081 566 111 88 29 chr3 65064721 65064823 -94534960 - B1_Mur3 SINE Alu 0 149 42 9 1081 304 0 0 160 chr3 65064826 65064982 -94534801 + (CTCTG)n Simple_repeat Simple_repeat 5 135 0 9 1081 300 172 0 49 chr3 65064983 65065044 -94534739 - B1_Mur4 SINE Alu -90 60 3 9 1081 480 274 9 0 chr3 65065855 65065968 -94533815 - PB1D9 SINE Alu 0 120 7 9 1081 535 129 0 0 chr3 65068169 65068262 -94531521 - L1Md_F2 LINE L1 0 6582 6490 9 1081 189 368 78 69 chr3 65068618 65068849 -94530934 + L2c LINE L2 3143 3375 -12 9 1081 198 259 17 17 chr3 65070010 65070069 -94529714 - MIR SINE MIR -3 259 201 9 1081 518 254 22 36 chr3 65070928 65071067 -94528716 + MTE2b LTR MaLR 40 176 -203 9 1081 264 242 0 16 chr3 65071120 65071183 -94528600 - MTEa LTR MaLR -131 248 187 1 1081 224 316 32 0 chr3 65071657 65071752 -94528031 + C-rich Low_complexity Low_complexity 5 102 0 1 1081 564 217 35 0 chr3 65071777 65071892 -94527891 - MTEa LTR MaLR -247 132 14 1 1081 1147 253 50 50 chr3 65071894 65072252 -94527531 - MTEa-int LTR MaLR -11 1569 1212 1 1081 2352 291 77 32 chr3 65072726 65073557 -94526226 - MTEa-int LTR MaLR -371 1209 342 1 1081 813 49 0 0 chr3 65073563 65073665 -94526118 + (TTCTCC)n Simple_repeat Simple_repeat 2 103 0 1 1081 703 234 14 28 chr3 65073665 65073800 -94525983 - B1_Mur2 SINE Alu -9 140 8 1 1081 803 302 44 121 chr3 65073791 65074179 -94525604 - MTEa-int LTR MaLR -1212 368 11 1 1081 803 288 101 45 chr3 65074188 65074544 -94525239 - MTEa LTR MaLR 0 379 4 1 1081 832 318 14 14 chr3 65074659 65074940 -94524843 + B4A SINE B4 4 284 -8 1 1081 817 230 8 21 chr3 65075187 65075365 -94524418 + ID_B1 SINE B4 58 225 -67 1 1081 574 329 38 0 chr3 65075372 65075530 -94524253 + RSINE1 SINE B4 2 165 0 1 1081 255 310 14 0 chr3 65075530 65075601 -94524182 + (CATA)n Simple_repeat Simple_repeat 3 74 0 1 1081 219 143 48 0 chr3 65075723 65075765 -94524018 + (TTTG)n Simple_repeat Simple_repeat 1 44 0 1 1081 1084 257 65 22 chr3 65077217 65077495 -94522288 - B4 SINE B4 -2 290 1 1 1081 367 286 20 0 chr3 65078387 65078485 -94521298 + MTE2b LTR MaLR 3 102 -277 1 1081 792 0 0 0 chr3 65078516 65078604 -94521179 + (GGAGA)n Simple_repeat Simple_repeat 2 89 0 1 1081 665 212 44 9 chr3 65078607 65078764 -94521019 + MTE2b LTR MaLR 198 366 -4 1 1081 270 0 0 0 chr3 65079137 65079167 -94520616 + (GA)n Simple_repeat Simple_repeat 1 30 0 1 1081 279 282 28 0 chr3 65079803 65079874 -94519909 + ID4_ SINE ID 5 77 -6 1 1081 721 71 312 0 chr3 65079918 65080030 -94519753 + B1_Mus1 SINE Alu 2 148 0 1 1081 2740 83 13 16 chr3 65080034 65080412 -94519371 + L1_Mus3 LINE L1 6262 6638 0 1 1081 433 266 53 53 chr3 65080577 65080728 -94519055 + B3A SINE B2 48 198 0 1 1081 393 22 0 0 chr3 65080769 65080815 -94518968 + (TTGG)n Simple_repeat Simple_repeat 2 47 0 1 1081 1275 49 0 0 chr3 65080820 65080963 -94518820 - B1_Mus1 SINE Alu -5 143 1 1 1081 913 215 131 0 chr3 65081231 65081422 -94518361 - B3 SINE B2 0 216 1 1 1081 24 0 0 0 chr3 65081430 65081454 -94518329 + AT_rich Low_complexity Low_complexity 1 24 0 1 1081 507 288 23 0 chr3 65081479 65081611 -94518172 - RSINE1 SINE B4 -28 137 3 1 1081 1403 74 23 6 chr3 65082645 65082822 -94516961 + B2_Mm2 SINE B2 2 181 -14 1 1081 1847 150 120 57 chr3 65082956 65083323 -94516460 - ORR1B1 LTR MaLR 0 394 5 1 1081 7883 40 33 8 chr3 65084297 65085231 -94514552 - RLTR13A2 LTR ERVK 0 958 1 1 1081 681 255 13 32 chr3 65085502 65085656 -94514127 + RSINE1 SINE B4 11 161 -4 1 1081 279 0 0 0 chr3 65085662 65085693 -94514090 + (CA)n Simple_repeat Simple_repeat 1 31 0 1 1081 1762 175 45 22 chr3 65086695 65087045 -94512738 - ORR1C2 LTR MaLR -1 378 26 1 1081 205 184 26 0 chr3 65087263 65087301 -94512482 + GA-rich Low_complexity Low_complexity 2 40 0 1 1081 278 286 66 9 chr3 65088105 65088211 -94511572 - MIRb SINE MIR -66 202 91 1 1081 494 217 11 0 chr3 65088445 65088537 -94511246 + Lx8 LINE L1 7104 7196 -277 1 1081 399 21 0 0 chr3 65088623 65088671 -94511112 + (CA)n Simple_repeat Simple_repeat 2 49 0 1 1081 343 303 149 52 chr3 65089678 65089946 -94509837 - ORR1E LTR MaLR -2 357 64 1 1081 271 294 82 25 chr3 65089971 65090093 -94509690 - MLT2B2 LTR ERVL -384 131 3 1 1081 348 161 0 0 chr3 65090530 65090592 -94509191 + (TA)n Simple_repeat Simple_repeat 2 63 0 1 1081 28 71 0 0 chr3 65091221 65091277 -94508506 + AT_rich Low_complexity Low_complexity 1 56 0 1 1081 1434 143 0 47 chr3 65092364 65092599 -94507184 - URR1B DNA MER1_type 0 225 2 1 1081 180 192 74 37 chr3 65092753 65092807 -94506976 + MIRc SINE MIR 125 180 -88 1 1081 216 0 0 0 chr3 65094349 65094373 -94505410 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1 1081 297 279 108 145 chr3 65094448 65094800 -94504983 - MLT1A1 LTR MaLR -68 340 2 1 1081 1673 184 39 7 chr3 65095003 65095309 -94504474 - Lx5 LINE L1 0 7050 6735 1 1081 447 301 45 40 chr3 65095466 65095667 -94504116 - Charlie8 DNA MER1_type -539 1889 1688 1 1081 320 321 12 0 chr3 65095750 65095834 -94503949 + Tigger5 DNA MER2_type 16 100 -2306 1 1081 288 352 0 32 chr3 65095816 65095910 -94503873 - ID_B1 SINE B4 -130 94 4 1 1081 380 281 71 14 chr3 65095914 65096055 -94503728 + Tigger5 DNA MER2_type 86 234 -2172 1 1081 920 295 215 29 chr3 65096136 65097014 -94502769 - Charlie8 DNA MER1_type -848 1580 539 1 1081 259 336 15 112 chr3 65097367 65097501 -94502282 - Charlie8 DNA MER1_type -2312 116 1 1 1081 209 57 29 0 chr3 65097782 65097817 -94501966 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 1 1081 1198 45 0 0 chr3 65097817 65097951 -94501832 - B1_Mus2 SINE Alu -13 134 1 1 1081 262 327 82 0 chr3 65098168 65098278 -94501505 + L2c LINE L2 3041 3159 -228 1 1081 324 0 0 0 chr3 65099311 65099347 -94500436 + (TG)n Simple_repeat Simple_repeat 2 37 0 1 1081 313 353 147 19 chr3 65099361 65099517 -94500266 - LTR16A LTR ERVL -261 190 15 1 1081 310 339 88 8 chr3 65100221 65100346 -94499437 - ORR1E LTR MaLR -224 135 1 1 1081 474 18 0 0 chr3 65103619 65103674 -94496109 + (TAAAA)n Simple_repeat Simple_repeat 2 56 0 1 1081 357 313 0 0 chr3 65104515 65104614 -94495169 + MIRc SINE MIR 49 147 -121 1 1081 1000 229 166 11 chr3 65108168 65108451 -94491332 + Lx6 LINE L1 7107 7433 -27 1 1081 314 183 17 0 chr3 65108578 65108638 -94491145 + ID4_ SINE ID 6 66 -17 1 1081 315 0 0 0 chr3 65108643 65108678 -94491105 + (CA)n Simple_repeat Simple_repeat 2 36 0 1 1081 992 119 17 6 chr3 65108700 65108878 -94490905 + (GGGA)n Simple_repeat Simple_repeat 1 180 0 1 1081 2126 147 15 3 chr3 65109020 65109354 -94490429 + ORR1A1 LTR MaLR 1 338 -8 1 1081 783 255 21 5 chr3 65109496 65109689 -94490094 + Lx8 LINE L1 6865 7060 -413 1 1081 266 208 0 0 chr3 65109739 65109787 -94489996 + Lx8 LINE L1 7071 7118 -355 1 1081 364 284 185 13 chr3 65109834 65109991 -94489792 + Lx8 LINE L1 7257 7440 -33 1 1081 207 0 0 0 chr3 65109992 65110015 -94489768 + (TA)n Simple_repeat Simple_repeat 2 24 0 1 1081 351 0 0 0 chr3 65110344 65110383 -94489400 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 1081 23 68 0 0 chr3 65110531 65110575 -94489208 + AT_rich Low_complexity Low_complexity 1 44 0 1 1081 378 336 40 74 chr3 65110594 65110742 -94489041 - RSINE1 SINE B4 -21 144 2 1 1081 187 345 104 81 chr3 65110916 65111023 -94488760 + MIR SINE MIR 25 143 -119 1 1081 198 0 0 0 chr3 65111023 65111045 -94488738 + (TTTTG)n Simple_repeat Simple_repeat 1 22 0 1 1081 187 345 104 81 chr3 65111045 65111148 -94488635 + MIR SINE MIR 144 240 -22 1 1081 459 0 0 0 chr3 65111500 65111551 -94488232 + (GA)n Simple_repeat Simple_repeat 2 52 0 1 1081 489 90 51 0 chr3 65112429 65112501 -94487282 - ORR1C1 LTR MaLR 0 384 309 1 1081 632 159 264 12 chr3 65112501 65112668 -94487115 + B3 SINE B2 1 209 -7 1 1081 1610 112 95 33 chr3 65112659 65112798 -94486985 - ORR1C1 LTR MaLR -55 323 165 1 1081 402 21 0 0 chr3 65112798 65112845 -94486938 + (GA)n Simple_repeat Simple_repeat 2 48 0 1 1081 1610 112 95 33 chr3 65112845 65113009 -94486774 - ORR1C1 LTR MaLR -214 164 2 1 1081 735 224 14 0 chr3 65113636 65113783 -94486000 + B1_Mur3 SINE Alu 1 149 0 1 1081 488 229 131 29 chr3 65113814 65113989 -94485794 + B2_Mm2 SINE B2 3 195 0 1 1081 22 56 0 0 chr3 65114011 65114047 -94485736 + AT_rich Low_complexity Low_complexity 1 36 0 1 1081 1217 143 4 49 chr3 65114056 65114299 -94485484 - Lx3A LINE L1 -8 6973 6742 1 1081 180 327 18 0 chr3 65114547 65114602 -94485181 + L2c LINE L2 3294 3349 -38 1 1081 239 361 0 0 chr3 65115686 65115769 -94484014 + PB1D10 SINE Alu 1 83 -34 1 1081 263 329 0 0 chr3 65115815 65115891 -94483892 + ID4_ SINE ID 5 80 -3 1 1081 2697 139 48 7 chr3 65116315 65116757 -94483026 - Lx4A LINE L1 0 7058 6599 1 1081 467 251 167 43 chr3 65116786 65117044 -94482739 - L1MA6 LINE L1 -52 6248 5959 1 1081 666 231 104 35 chr3 65117050 65117192 -94482591 - B3 SINE B2 0 216 67 1 1081 1545 105 106 199 chr3 65117192 65117282 -94482501 + RMER17C LTR ERVK 1 90 -320 1 1081 492 18 0 0 chr3 65117282 65117339 -94482444 + (TC)n Simple_repeat Simple_repeat 1 57 0 1 1081 1545 105 106 199 chr3 65117339 65117700 -94482083 + RMER17C LTR ERVK 91 410 0 1 1081 666 231 104 35 chr3 65117700 65117759 -94482024 - B3 SINE B2 -150 66 1 1 1081 284 272 25 0 chr3 65117766 65117847 -94481936 - L1MA6 LINE L1 -348 5943 5861 1 1081 1251 83 150 14 chr3 65117849 65118069 -94481714 + L1_Mus3 LINE L1 6382 6631 -7 1 1081 531 31 0 0 chr3 65118172 65118237 -94481546 + (TAGA)n Simple_repeat Simple_repeat 2 66 0 1 1081 252 293 0 0 chr3 65118347 65118422 -94481361 - L1MA6 LINE L1 -864 5279 5205 1 1081 303 215 31 0 chr3 65118420 65118485 -94481298 - L1M2 LINE L1 -3955 3145 3079 1 1081 240 35 0 0 chr3 65118606 65118635 -94481148 + (T)n Simple_repeat Simple_repeat 1 29 0 1 1081 1130 62 0 14 chr3 65118649 65118796 -94480987 - B1_Mus2 SINE Alu -1 146 2 1 1081 270 307 70 9 chr3 65119175 65119290 -94480493 - L1MEf LINE L1 -4625 1575 1454 1 1081 199 79 0 50 chr3 65119296 65119336 -94480447 + (TTA)n Simple_repeat Simple_repeat 3 40 0 1 1081 365 315 61 18 chr3 65119412 65119577 -94480206 - L1M2 LINE L1 -4496 2611 2440 1 1081 279 0 0 0 chr3 65119824 65119855 -94479928 + (TTTTG)n Simple_repeat Simple_repeat 5 35 0 1 1081 880 276 106 10 chr3 65119935 65120228 -94479555 - Lx8 LINE L1 -252 7221 6901 1 1081 322 296 61 50 chr3 65120264 65120445 -94479338 - B3A SINE B2 -15 183 1 1 1081 265 283 154 11 chr3 65120516 65120691 -94479092 - L1M2 LINE L1 -4649 2388 2189 1 1081 832 159 7 28 chr3 65120810 65120952 -94478831 - B1_Mus1 SINE Alu -7 141 3 1 1081 267 31 0 0 chr3 65121028 65121060 -94478723 + (CATATA)n Simple_repeat Simple_repeat 4 35 0 1 1081 772 185 40 6 chr3 65121060 65121234 -94478549 - Lx9 LINE L1 -7 7637 7458 1 1081 224 239 0 0 chr3 65121234 65121280 -94478503 + (CATA)n Simple_repeat Simple_repeat 3 48 0 1 1081 639 224 0 0 chr3 65121281 65121460 -94478323 + (CA)n Simple_repeat Simple_repeat 2 180 0 1 1081 841 159 68 0 chr3 65121460 65121623 -94478160 - Lx9 LINE L1 -127 7517 7344 1 1081 353 290 40 0 chr3 65121640 65121740 -94478043 - PB1D10 SINE Alu -13 104 1 1 1081 260 229 16 4 chr3 65121740 65121829 -94477954 - L1M2 LINE L1 -4938 2092 2038 1 1081 679 151 217 0 chr3 65122844 65122996 -94476787 + URR1B DNA MER1_type 41 225 0 1 1081 262 284 82 9 chr3 65123049 65123159 -94476624 - L1M2 LINE L1 -6866 164 47 1 1081 216 231 0 37 chr3 65123620 65123674 -94476109 + CT-rich Low_complexity Low_complexity 3 54 0 1 1081 251 225 28 14 chr3 65124255 65124327 -94475456 + (TA)n Simple_repeat Simple_repeat 2 74 0 1 1081 4133 39 12 2 chr3 65127234 65127722 -94472061 - MT2_Mm LTR ERVL 0 493 1 2 1081 180 0 0 0 chr3 65128031 65128051 -94471732 + (TA)n Simple_repeat Simple_repeat 2 21 0 2 1081 387 243 212 8 chr3 65128206 65128451 -94471332 - MER33 DNA MER1_type 0 324 30 2 1081 442 339 48 66 chr3 65128571 65128843 -94470940 - ORR1E LTR MaLR -81 278 12 2 1081 2556 296 64 75 chr3 65128839 65129391 -94470392 - MTE-int LTR MaLR -52 1528 955 2 1081 351 0 0 0 chr3 65129391 65129430 -94470353 + (CA)n Simple_repeat Simple_repeat 2 40 0 2 1081 2556 296 64 75 chr3 65129430 65130092 -94469691 - MTE-int LTR MaLR -626 954 327 2 1081 316 331 7 37 chr3 65130740 65130875 -94468908 - L2a LINE L2 -17 3409 3279 2 1081 740 285 45 35 chr3 65130883 65131170 -94468613 + B4A SINE B4 1 290 -2 2 1081 212 0 0 35 chr3 65131203 65131232 -94468551 + (TAAA)n Simple_repeat Simple_repeat 1 28 0 2 1081 638 246 138 27 chr3 65131733 65131921 -94467862 + B3 SINE B2 1 209 -7 2 1081 446 46 15 0 chr3 65132790 65132855 -94466928 + (GA)n Simple_repeat Simple_repeat 1 66 0 2 1081 270 274 14 0 chr3 65133969 65134042 -94465741 + ID4_ SINE ID 8 81 -2 2 1081 211 54 0 51 chr3 65134792 65134831 -94464952 + (TTTC)n Simple_repeat Simple_repeat 4 40 0 2 1081 4630 198 29 12 chr3 65134848 65135703 -94464080 - Lx5 LINE L1 -17 7033 6164 2 1081 301 337 0 56 chr3 65135704 65135811 -94463972 + LTR78 LTR ERV1 338 438 -866 2 1081 198 273 182 0 chr3 65137462 65137583 -94462200 - L2b LINE L2 -317 3058 2916 2 1081 232 250 28 0 chr3 65137819 65137891 -94461892 - L2b LINE L2 -833 2586 2513 2 1081 709 95 26 0 chr3 65137895 65138011 -94461772 - URR1B DNA MER1_type -2 223 105 2 1081 200 356 25 100 chr3 65138141 65138422 -94461361 - L2b LINE L2 -1047 2372 2113 2 1081 691 101 64 29 chr3 65138716 65138889 -94460894 + (TTGG)n Simple_repeat Simple_repeat 2 180 0 2 1081 843 89 59 12 chr3 65138900 65139070 -94460713 + (TTGG)n Simple_repeat Simple_repeat 2 179 0 2 1081 264 250 0 0 chr3 65139071 65139123 -94460660 + (GCTG)n Simple_repeat Simple_repeat 3 54 0 2 1081 180 0 0 0 chr3 65139391 65139411 -94460372 + (A)n Simple_repeat Simple_repeat 1 20 0 2 1081 412 179 26 0 chr3 65139619 65139697 -94460086 + B3A SINE B2 1 80 -118 2 1081 333 68 0 0 chr3 65139731 65139775 -94460008 + (CA)n Simple_repeat Simple_repeat 1 44 0 2 1081 3001 193 38 39 chr3 65140201 65141015 -94458768 - RMER13A LTR ERVK -68 840 58 2 1081 254 221 62 49 chr3 65141193 65141274 -94458509 + HAL1 LINE L1 2426 2507 0 2 1081 262 182 14 108 chr3 65141423 65141497 -94458286 - ORR1E LTR MaLR -285 74 8 2 1081 1877 281 120 58 chr3 65141479 65142396 -94457387 - ORR1E-int LTR MaLR -28 1552 579 2 1081 27 62 0 0 chr3 65142396 65142444 -94457339 + AT_rich Low_complexity Low_complexity 1 48 0 2 1081 387 315 24 47 chr3 65142529 65142699 -94457084 + MIR SINE MIR 97 262 0 2 1082 1349 56 39 11 chr3 65142948 65143129 -94456654 - B2_Mm2 SINE B2 -8 187 2 2 1082 1160 68 0 0 chr3 65143193 65143339 -94456444 + B1_Mus2 SINE Alu 2 147 0 2 1082 305 314 124 35 chr3 65143669 65143870 -94455913 - ORR1E LTR MaLR -44 315 97 2 1082 277 227 15 0 chr3 65143910 65143976 -94455807 - MLT1A1 LTR MaLR -274 134 68 2 1082 182 244 0 0 chr3 65145052 65145093 -94454690 + MIR SINE MIR 104 144 -64 2 1082 789 269 61 41 chr3 65145111 65145406 -94454377 - RMER15 LTR ERVL 0 575 275 2 1082 3450 35 2 0 chr3 65145960 65146355 -94453428 + MTA_Mm LTR MaLR 1 396 0 2 1082 231 320 0 0 chr3 65147107 65147182 -94452601 + L4 LINE RTE 967 1041 -988 2 1082 3241 53 13 2 chr3 65147290 65147686 -94452097 - MTB LTR MaLR 0 400 1 2 1082 357 177 0 0 chr3 65147902 65147981 -94451802 + GA-rich Low_complexity Low_complexity 2 80 0 2 1082 636 302 118 25 chr3 65148305 65148628 -94451155 + ORR1E LTR MaLR 1 353 -6 2 1082 670 228 0 7 chr3 65149076 65149222 -94450561 - MTD LTR MaLR -263 156 12 2 1082 1538 199 114 26 chr3 65149475 65149854 -94449929 - MTD LTR MaLR -14 405 1 2 1082 487 215 11 0 chr3 65150504 65150597 -94449186 + B3 SINE B2 99 192 -24 2 1082 27 29 0 0 chr3 65150597 65150631 -94449152 + AT_rich Low_complexity Low_complexity 1 34 0 2 1082 319 202 50 13 chr3 65150937 65151071 -94448712 + B1_Mur3 SINE Alu 3 139 -11 2 1082 1006 80 0 0 chr3 65151071 65151209 -94448574 + B2_Mm2 SINE B2 1 138 -57 2 1082 827 188 0 0 chr3 65151398 65151531 -94448252 + B1_Mus2 SINE Alu 1 133 -14 2 1082 522 0 0 0 chr3 65151533 65151591 -94448192 + (TAGA)n Simple_repeat Simple_repeat 3 60 0 2 1082 375 23 0 0 chr3 65151674 65151718 -94448065 + (CA)n Simple_repeat Simple_repeat 1 44 0 2 1082 1186 41 7 0 chr3 65152205 65152350 -94447433 + B1_Mus2 SINE Alu 1 146 -1 2 1082 242 87 22 0 chr3 65152355 65152401 -94447382 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 2 1082 587 287 8 0 chr3 65152675 65152804 -94446979 - B3 SINE B2 -83 133 4 2 1082 21 0 0 0 chr3 65152901 65152922 -94446861 + AT_rich Low_complexity Low_complexity 1 21 0 2 1082 4099 158 89 29 chr3 65153555 65154428 -94445355 + Lx3C LINE L1 6025 6976 0 2 1082 1255 19 30 0 chr3 65155220 65155490 -94444293 + (TAGA)n Simple_repeat Simple_repeat 1 278 0 2 1082 339 268 106 9 chr3 65155526 65155639 -94444144 + B1F SINE Alu 26 149 0 2 1082 181 273 101 43 chr3 65156114 65156183 -94443600 + MER5B DNA MER1_type 7 79 -99 2 1082 332 259 254 17 chr3 65156308 65156426 -94443357 + RSINE1 SINE B4 3 148 -17 2 1082 186 103 0 0 chr3 65156426 65156455 -94443328 + (CATA)n Simple_repeat Simple_repeat 4 32 0 2 1082 414 0 0 0 chr3 65157268 65157314 -94442469 + (TG)n Simple_repeat Simple_repeat 1 46 0 2 1082 324 0 0 0 chr3 65158210 65158246 -94441537 + (TTTTA)n Simple_repeat Simple_repeat 2 37 0 2 1082 264 91 0 0 chr3 65158246 65158290 -94441493 - B1_Mm SINE Alu -3 144 101 2 1082 632 250 7 7 chr3 65159062 65159211 -94440572 + B1F2 SINE Alu 1 149 0 2 1082 802 242 161 6 chr3 65163723 65164039 -94435744 - MER47A DNA MER2_type -1 365 1 2 1082 205 276 205 26 chr3 65164069 65164225 -94435558 - MIRc SINE MIR -43 225 42 2 1082 192 77 0 0 chr3 65164853 65164879 -94434904 + (T)n Simple_repeat Simple_repeat 1 26 0 2 1082 25 0 0 0 chr3 65166063 65166088 -94433695 + AT_rich Low_complexity Low_complexity 1 25 0 2 1082 512 298 73 62 chr3 65166328 65166603 -94433180 - B4 SINE B4 -10 282 5 2 1082 180 0 0 0 chr3 65166736 65166756 -94433027 + (T)n Simple_repeat Simple_repeat 1 20 0 2 1082 1046 102 0 7 chr3 65166756 65166904 -94432879 - B1_Mus2 SINE Alu 0 147 1 2 1082 791 269 0 25 chr3 65167919 65168121 -94431662 + B3A SINE B2 1 197 -1 2 1082 831 230 11 11 chr3 65168270 65168450 -94431333 - B3A SINE B2 -18 180 1 2 1082 247 42 41 41 chr3 65168920 65168969 -94430814 + (CAGAGA)n Simple_repeat Simple_repeat 6 54 0 2 1082 272 307 0 0 chr3 65168973 65169048 -94430735 + GA-rich Low_complexity Low_complexity 3 77 0 2 1082 28 0 0 0 chr3 65169110 65169138 -94430645 + AT_rich Low_complexity Low_complexity 1 28 0 2 1082 272 277 12 0 chr3 65169406 65169489 -94430294 - MER33 DNA MER1_type -2 322 239 2 1082 665 253 28 28 chr3 65169492 65169671 -94430112 + B3 SINE B2 30 208 -8 2 1082 23 0 0 0 chr3 65169805 65169828 -94429955 + AT_rich Low_complexity Low_complexity 1 23 0 2 1082 463 247 126 7 chr3 65170862 65171013 -94428770 + MER2 DNA MER2_type 168 336 -9 2 1082 1287 140 41 23 chr3 65171197 65171257 -94428526 + URR1A DNA MER1_type 4 69 -157 2 1082 243 0 0 0 chr3 65171257 65171284 -94428499 + (TA)n Simple_repeat Simple_repeat 2 28 0 2 1082 1287 140 41 23 chr3 65171284 65171442 -94428341 + URR1A DNA MER1_type 70 226 0 2 1082 332 263 157 32 chr3 65172701 65172886 -94426897 + L1MB8 LINE L1 5784 5991 -187 2 1082 1158 75 0 0 chr3 65173034 65173181 -94426602 + B1_Mm SINE Alu 1 147 0 2 1082 540 240 88 7 chr3 65173290 65173437 -94426346 + ID_B1 SINE B4 66 224 0 2 1082 2695 55 3 0 chr3 65174142 65174467 -94425316 - ORR1A2 LTR MaLR 0 327 2 2 1082 283 279 0 102 chr3 65174554 65174642 -94425141 + B1F2 SINE Alu 8 86 -63 2 1082 414 0 0 0 chr3 65175180 65175226 -94424557 + (CA)n Simple_repeat Simple_repeat 2 47 0 2 1082 182 315 29 64 chr3 65175738 65175911 -94423872 + L2c LINE L2 3217 3383 -4 2 1082 692 169 89 0 chr3 65176360 65176484 -94423299 + B1_Mur4 SINE Alu 11 145 -5 2 1082 201 330 11 33 chr3 65176932 65177023 -94422760 - L2c LINE L2 -25 3362 3274 2 1082 216 167 0 0 chr3 65177985 65178033 -94421750 + CT-rich Low_complexity Low_complexity 1 48 0 2 1082 895 146 174 15 chr3 65179208 65179403 -94420380 + URR1A DNA MER1_type 1 226 0 2 1082 1370 82 33 0 chr3 65180029 65180211 -94419572 - B2_Mm2 SINE B2 -7 188 1 2 1082 347 250 22 22 chr3 65182412 65182502 -94417281 + PB1D10 SINE Alu 7 96 -21 2 1082 234 0 0 0 chr3 65183065 65183091 -94416692 + (TTG)n Simple_repeat Simple_repeat 2 27 0 2 1082 29 0 0 0 chr3 65183216 65183245 -94416538 + AT_rich Low_complexity Low_complexity 1 29 0 2 1082 21 0 0 0 chr3 65185317 65185338 -94414445 + AT_rich Low_complexity Low_complexity 1 21 0 2 1082 21 36 0 0 chr3 65186472 65186500 -94413283 + AT_rich Low_complexity Low_complexity 1 28 0 2 1082 305 364 93 24 chr3 65189581 65189913 -94409870 + L4 LINE RTE 1435 1789 -240 2 1082 207 0 0 0 chr3 65190245 65190268 -94409515 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 2 1082 208 217 27 68 chr3 65190582 65190656 -94409127 + MIR SINE MIR 96 173 -95 2 1082 1923 200 103 22 chr3 65190672 65191177 -94408606 - Lx9 LINE L1 -22 7622 7077 2 1082 343 245 151 59 chr3 65191433 65191585 -94408198 + B4A SINE B4 107 272 -20 2 1082 219 103 0 0 chr3 65191605 65191644 -94408139 + (CAGA)n Simple_repeat Simple_repeat 4 42 0 3 1082 419 275 28 0 chr3 65192393 65192502 -94407281 + PB1D10 SINE Alu 1 112 -5 3 1082 30 0 0 0 chr3 65192566 65192596 -94407187 + AT_rich Low_complexity Low_complexity 1 30 0 3 1082 937 86 0 14 chr3 65193636 65193777 -94406006 + B1_Mus2 SINE Alu 9 147 0 3 1082 977 195 38 0 chr3 65193794 65193979 -94405804 - B3 SINE B2 -24 192 1 3 1082 671 244 22 17 chr3 65194232 65194411 -94405372 + B3A SINE B2 4 183 -15 3 1082 28 0 0 0 chr3 65194433 65194461 -94405322 + AT_rich Low_complexity Low_complexity 1 28 0 3 1082 1030 142 15 59 chr3 65194600 65194802 -94404981 + B2_Mm2 SINE B2 3 195 0 3 1082 22 0 0 0 chr3 65194904 65194926 -94404857 + AT_rich Low_complexity Low_complexity 1 22 0 3 1082 24 67 0 0 chr3 65196273 65196318 -94403465 + GC_rich Low_complexity Low_complexity 1 45 0 3 1082 228 111 0 0 chr3 65196800 65196836 -94402947 + (CTAA)n Simple_repeat Simple_repeat 2 37 0 3 1082 257 169 17 0 chr3 65196891 65196950 -94402833 + (ATTG)n Simple_repeat Simple_repeat 1 60 0 3 1082 437 233 155 0 chr3 65196956 65197072 -94402711 - RSINE1 SINE B4 -20 145 12 3 1082 411 21 0 0 chr3 65197084 65197132 -94402651 + (TTA)n Simple_repeat Simple_repeat 1 48 0 3 1082 198 94 57 0 chr3 65199604 65199651 -94400132 + T-rich Low_complexity Low_complexity 11 60 0 3 1082 462 216 94 29 chr3 65199651 65199789 -94399994 - B1F2 SINE Alu -2 147 1 3 1082 714 211 7 0 chr3 65199980 65200122 -94399661 + B3A SINE B2 4 146 -52 3 1082 411 214 0 22 chr3 65200352 65200443 -94399340 - ID SINE ID -135 89 1 3 1082 207 0 0 0 chr3 65201132 65201155 -94398628 + (TAAA)n Simple_repeat Simple_repeat 1 23 0 3 1082 512 239 13 30 chr3 65201607 65201739 -94398044 + B3A SINE B2 1 130 -63 3 1082 35 24 0 0 chr3 65201802 65201844 -94397939 + AT_rich Low_complexity Low_complexity 1 42 0 3 1082 260 288 24 24 chr3 65201909 65201991 -94397792 + ID4_ SINE ID 2 83 0 3 1082 7413 130 64 50 chr3 65202036 65202417 -94397366 + Lx7 LINE L1 4484 4841 -1039 3 1082 1225 64 103 6 chr3 65202417 65202591 -94397192 + B2_Mm2 SINE B2 1 191 -4 3 1082 7413 130 64 50 chr3 65202591 65202980 -94396803 + Lx7 LINE L1 4842 5211 -669 3 1082 315 0 0 0 chr3 65202980 65203015 -94396768 + (TA)n Simple_repeat Simple_repeat 2 36 0 3 1082 7626 174 57 23 chr3 65203015 65204840 -94394943 + Lx7 LINE L1 5212 7147 -549 3 1082 304 240 0 0 chr3 65204832 65204907 -94394876 + Lx7 LINE L1 7293 7367 -329 3 1082 1439 171 121 42 chr3 65204918 65205122 -94394661 + Lx7 LINE L1 7314 7519 -177 3 1082 276 30 0 0 chr3 65205122 65205155 -94394628 + (TTTTA)n Simple_repeat Simple_repeat 1 33 0 3 1082 1439 171 121 42 chr3 65205155 65205305 -94394478 + Lx7 LINE L1 7520 7695 -1 3 1082 3119 142 88 20 chr3 65205325 65205871 -94393912 - RMER4B LTR ERVK 0 585 3 3 1082 323 309 87 0 chr3 65206805 65206931 -94392852 - MIRb SINE MIR -80 188 52 3 1082 226 289 77 11 chr3 65209134 65209225 -94390558 + MIRc SINE MIR 36 132 -136 3 1082 288 0 0 0 chr3 65209627 65209659 -94390124 + (TG)n Simple_repeat Simple_repeat 1 32 0 3 1082 213 65 0 0 chr3 65209661 65209692 -94390091 + (GA)n Simple_repeat Simple_repeat 2 32 0 3 1082 777 263 142 59 chr3 65209707 65210079 -94389704 + MLT2B2 LTR ERVL 98 500 -15 3 1082 22 0 0 0 chr3 65210135 65210157 -94389626 + AT_rich Low_complexity Low_complexity 1 22 0 3 1082 336 253 0 0 chr3 65210287 65210378 -94389405 - L1ME4a LINE L1 -260 5864 5774 3 1082 284 250 26 0 chr3 65210458 65210534 -94389249 - L1ME4a LINE L1 -84 6040 5963 3 1082 1826 150 44 57 chr3 65211769 65212152 -94387631 - ORR1C1 LTR MaLR 0 378 1 3 1082 4269 164 11 30 chr3 65212190 65212999 -94386784 + RMER13B LTR ERVK 1 794 -114 3 1082 563 258 38 38 chr3 65213526 65213683 -94386100 + RSINE1 SINE B4 2 158 -7 3 1082 483 33 0 0 chr3 65213701 65213762 -94386021 + (CA)n Simple_repeat Simple_repeat 2 62 0 3 1082 504 0 0 0 chr3 65214459 65214515 -94385268 + (TC)n Simple_repeat Simple_repeat 1 56 0 3 1082 396 0 0 0 chr3 65214518 65214562 -94385221 + (CA)n Simple_repeat Simple_repeat 1 44 0 3 1082 450 244 25 25 chr3 65215067 65215183 -94384600 + B4A SINE B4 15 130 -162 3 1082 337 82 0 0 chr3 65215183 65215232 -94384551 - ORR1C2 LTR MaLR 0 384 336 3 1082 4348 158 53 36 chr3 65215239 65216119 -94383664 - RMER19B LTR ERVK -7 895 1 3 1082 1457 177 167 0 chr3 65216146 65216440 -94383343 - Lx5 LINE L1 -4 7046 6704 3 1082 1828 128 75 3 chr3 65216440 65216760 -94383023 - ORR1C2 LTR MaLR -41 343 1 3 1082 272 143 0 18 chr3 65216871 65216928 -94382855 + (CATA)n Simple_repeat Simple_repeat 4 59 0 3 1082 1696 197 8 56 chr3 65217301 65217678 -94382105 + ORR1B2 LTR MaLR 1 359 -8 3 1082 369 278 77 31 chr3 65218660 65218790 -94380993 + RMER30 DNA MER1_type 4 139 -63 3 1082 252 273 13 0 chr3 65219365 65219442 -94380341 - MER113A DNA MER1_type -135 179 102 3 1082 231 331 65 58 chr3 65219484 65219604 -94380179 + MER5B DNA MER1_type 6 120 -58 3 1082 186 43 0 0 chr3 65219604 65219627 -94380156 + (TAAAA)n Simple_repeat Simple_repeat 3 25 0 3 1082 231 331 65 58 chr3 65219627 65219644 -94380139 + MER5B DNA MER1_type 121 144 -34 3 1082 2164 155 29 49 chr3 65220546 65220932 -94378851 - ORR1C1 LTR MaLR 0 378 1 3 1082 730 125 109 0 chr3 65220956 65221084 -94378699 - B1_Mus1 SINE Alu 0 148 7 3 1082 348 266 98 65 chr3 65221311 65221464 -94378319 + RSINE1 SINE B4 1 158 -7 3 1082 836 196 26 0 chr3 65221639 65221792 -94377991 + B3A SINE B2 4 160 -38 3 1082 459 52 0 0 chr3 65221800 65221858 -94377925 + (TC)n Simple_repeat Simple_repeat 1 58 0 3 1082 381 43 0 0 chr3 65221858 65221904 -94377879 + (CA)n Simple_repeat Simple_repeat 1 47 0 3 1082 195 197 176 29 chr3 65222083 65222151 -94377632 + L2b LINE L2 3287 3364 -11 3 1082 339 343 98 0 chr3 65223755 65223898 -94375885 - RSINE1 SINE B4 -6 159 3 3 1082 784 224 15 50 chr3 65224753 65224955 -94374828 + B3A SINE B2 2 196 -2 3 1082 1024 206 0 32 chr3 65224973 65225194 -94374589 + B3 SINE B2 3 216 0 3 1082 576 281 7 14 chr3 65225214 65225355 -94374428 + RSINE1 SINE B4 1 140 -25 3 1082 1126 106 0 16 chr3 65225395 65225578 -94374205 + (GAA)n Simple_repeat Simple_repeat 1 180 0 3 1082 180 0 0 0 chr3 65225966 65225986 -94373797 + (T)n Simple_repeat Simple_repeat 1 20 0 3 1082 302 222 0 0 chr3 65226068 65226131 -94373652 + B1F SINE Alu 82 144 -5 3 1082 381 75 0 0 chr3 65226673 65226726 -94373057 + (TTTC)n Simple_repeat Simple_repeat 4 56 0 3 1082 38676 30 0 0 chr3 65227070 65233502 -94366281 - L1Md_T LINE L1 0 6585 56 3 1082 26 0 0 0 chr3 65233847 65233873 -94365910 + AT_rich Low_complexity Low_complexity 1 26 0 3 1082 189 354 24 12 chr3 65233979 65234062 -94365721 + L2c LINE L2 2976 3059 -328 3 1082 732 187 0 0 chr3 65234262 65234385 -94365398 + B1_Mus1 SINE Alu 1 123 -25 3 1082 214 304 0 0 chr3 65234449 65234518 -94365265 + CT-rich Low_complexity Low_complexity 3 71 0 3 1082 284 200 31 10 chr3 65234794 65234890 -94364893 + GA-rich Low_complexity Low_complexity 1 98 0 3 1082 247 261 46 0 chr3 65235919 65235984 -94363799 - ID4 SINE ID -2 81 14 3 1082 1016 234 28 14 chr3 65236260 65236472 -94363311 + B3 SINE B2 2 216 0 3 1082 639 136 88 0 chr3 65237085 65237210 -94362573 + ORR1C2 LTR MaLR 69 204 -170 3 1082 1822 106 109 0 chr3 65237212 65237477 -94362306 + L1VL2 LINE L1 284 577 -5758 3 1082 5317 82 22 1 chr3 65237470 65238227 -94361556 + MusHAL1 LINE L1 1659 2431 -281 3 1082 642 58 0 46 chr3 65238294 65238402 -94361381 + Lx LINE L1 6545 6647 -7 3 1082 688 223 62 11 chr3 65238426 65238603 -94361180 + ORR1C2 LTR MaLR 199 384 0 3 1082 504 233 120 16 chr3 65238636 65238819 -94360964 - L1M5 LINE L1 -577 5587 5386 3 1082 299 331 91 0 chr3 65239920 65240041 -94359742 - MIR SINE MIR -84 178 47 3 1082 823 260 129 8 chr3 65240590 65240840 -94358943 + MTD LTR MaLR 1 281 -138 3 1082 2204 189 5 5 chr3 65240840 65241259 -94358524 + MTC LTR MaLR 1 419 -2 3 1082 347 237 93 0 chr3 65241263 65241381 -94358402 + MTD LTR MaLR 279 407 -12 3 1082 388 279 94 12 chr3 65241407 65241622 -94358161 - L1MB7 LINE L1 -145 6039 5803 3 1082 473 266 85 8 chr3 65241662 65241791 -94357992 - B1F2 SINE Alu -1 148 10 3 1082 432 51 0 0 chr3 65241811 65241870 -94357913 + (TC)n Simple_repeat Simple_repeat 2 60 0 3 1082 2061 72 8 0 chr3 65241889 65242151 -94357632 - L1_Mus1 LINE L1 0 6567 6304 3 1082 591 267 28 0 chr3 65242151 65242327 -94357456 - L1MB7 LINE L1 -371 5813 5633 3 1082 25 0 0 0 chr3 65242822 65242847 -94356936 + AT_rich Low_complexity Low_complexity 1 25 0 3 1082 314 287 9 60 chr3 65242850 65243027 -94356756 + ID_B1 SINE B4 16 179 -113 3 1082 581 242 8 0 chr3 65243569 65243689 -94356094 - B3 SINE B2 0 216 96 3 1082 1212 40 14 0 chr3 65243758 65243906 -94355877 + B1_Mur4 SINE Alu 1 150 0 3 1082 238 333 21 0 chr3 65244176 65244272 -94355511 - MER5A1 DNA MER1_type -65 101 4 3 1082 267 122 0 0 chr3 65244409 65244458 -94355325 + (TC)n Simple_repeat Simple_repeat 2 50 0 3 1082 827 217 11 11 chr3 65244463 65244645 -94355138 - B3A SINE B2 -16 182 1 3 1082 26 30 0 0 chr3 65244812 65244845 -94354938 + AT_rich Low_complexity Low_complexity 1 33 0 3 1082 303 237 159 0 chr3 65245532 65245717 -94354066 + MER102a DNA MER1_type 98 329 -1 3 1082 317 345 64 0 chr3 65246237 65246347 -94353436 - L2b LINE L2 -1 3374 3258 3 1082 252 86 0 0 chr3 65247258 65247293 -94352490 + (TTTC)n Simple_repeat Simple_repeat 2 36 0 3 1082 266 256 80 32 chr3 65247883 65248008 -94351775 - MIR SINE MIR -106 156 26 3 1082 311 274 76 47 chr3 65248512 65248684 -94351099 + L1ME2 LINE L1 5771 5947 -217 3 1082 1332 86 0 0 chr3 65249043 65249217 -94350566 - Lx2 LINE L1 -212 6785 6612 4 1082 961 144 98 0 chr3 65249217 65249390 -94350393 + Lx2 LINE L1 6781 6970 -27 4 1082 194 62 0 30 chr3 65249390 65249423 -94350360 + (TAAA)n Simple_repeat Simple_repeat 1 32 0 4 1082 808 109 0 0 chr3 65249944 65250063 -94349720 + B1_Mus2 SINE Alu 2 120 -27 4 1082 188 146 0 47 chr3 65250086 65250129 -94349654 + (TATATG)n Simple_repeat Simple_repeat 6 46 0 4 1082 314 260 9 49 chr3 65250172 65250524 -94349259 + (TATG)n Simple_repeat Simple_repeat 1 337 0 4 1082 258 272 12 6 chr3 65250529 65250692 -94349091 + (TATATG)n Simple_repeat Simple_repeat 1 164 0 4 1082 188 262 15 15 chr3 65250716 65250848 -94348935 + (TATG)n Simple_repeat Simple_repeat 4 135 0 4 1082 330 269 7 43 chr3 65250858 65250998 -94348785 + (TATATG)n Simple_repeat Simple_repeat 4 138 0 4 1082 234 0 0 0 chr3 65251271 65251297 -94348486 + (GA)n Simple_repeat Simple_repeat 1 26 0 4 1082 227 154 0 0 chr3 65251585 65251624 -94348159 - MER58A DNA MER1_type -148 76 38 4 1082 519 17 0 0 chr3 65252055 65252115 -94347668 + (TG)n Simple_repeat Simple_repeat 2 61 0 4 1082 815 262 26 57 chr3 65252881 65253108 -94346675 + ID_B1 SINE B4 3 222 -2 4 1082 335 301 51 34 chr3 65253806 65253923 -94345860 + B1F SINE Alu 24 142 -7 4 1082 294 242 16 0 chr3 65253955 65254017 -94345766 + ID4_ SINE ID 12 74 -9 4 1082 368 200 12 0 chr3 65254019 65254104 -94345679 + (TGGA)n Simple_repeat Simple_repeat 1 86 0 4 1082 29 47 0 0 chr3 65254109 65254152 -94345631 + AT_rich Low_complexity Low_complexity 1 43 0 4 1082 270 272 74 0 chr3 65254779 65254860 -94344923 + ORR1E LTR MaLR 20 106 -253 4 1082 692 304 43 8 chr3 65255413 65255668 -94344115 - B4A SINE B4 -28 264 1 4 1082 285 237 105 0 chr3 65256037 65256113 -94343670 + LTR53 LTR ERVL 193 276 -243 4 1082 2507 222 16 31 chr3 65256131 65256749 -94343034 + RMER3D-int LTR ERVK 2234 2842 0 4 1082 3603 128 141 10 chr3 65256751 65257359 -94342424 + RLTR17 LTR ERVK 3 690 -2 4 1082 389 330 70 53 chr3 65257361 65257588 -94342195 + LTR53 LTR ERVL 288 518 -1 4 1082 315 0 0 0 chr3 65257773 65257808 -94341975 + (TG)n Simple_repeat Simple_repeat 2 36 0 4 1082 813 271 67 30 chr3 65257815 65258085 -94341698 - B4 SINE B4 -12 280 1 4 1082 3064 138 158 6 chr3 65258173 65258703 -94341080 - RMER19C LTR ERVK 0 611 1 4 1082 526 160 87 94 chr3 65259107 65259245 -94340538 - B1_Mur2 SINE Alu -11 138 2 4 1082 248 173 0 37 chr3 65259291 65259345 -94340438 + G-rich Low_complexity Low_complexity 3 54 0 4 1082 235 252 93 47 chr3 65260440 65260569 -94339214 - L1MB3 LINE L1 -3 6168 6034 4 1082 342 0 0 0 chr3 65260709 65260747 -94339036 + (CA)n Simple_repeat Simple_repeat 1 38 0 4 1082 268 212 47 12 chr3 65260826 65260912 -94338871 - L1MB3 LINE L1 -281 5902 5814 4 1082 839 282 23 67 chr3 65260987 65261287 -94338496 - B4A SINE B4 0 292 6 4 1082 1805 224 51 19 chr3 65261291 65261860 -94337923 - L1MB3 LINE L1 -377 5794 5206 4 1082 231 297 14 0 chr3 65261864 65261938 -94337845 - L1M2 LINE L1 -765 5535 5461 4 1082 660 212 126 93 chr3 65262250 65262552 -94337231 + MLT1B LTR MaLR 1 312 -78 4 1082 4852 244 64 16 chr3 65262610 65262775 -94337008 + Lx7 LINE L1 6006 6174 -1522 4 1082 531 45 0 0 chr3 65262775 65262841 -94336942 + (TA)n Simple_repeat Simple_repeat 2 67 0 4 1082 4852 244 64 16 chr3 65262841 65263931 -94335852 + Lx7 LINE L1 6175 7320 -376 4 1082 261 109 0 0 chr3 65264018 65264064 -94335719 + (T)n Simple_repeat Simple_repeat 1 46 0 4 1082 315 252 27 45 chr3 65264081 65264193 -94335590 + Lx7 LINE L1 7587 7696 0 4 1082 293 298 74 47 chr3 65264735 65264883 -94334900 - ORSL-2b DNA Tip100 -325 183 32 4 1082 1108 64 13 6 chr3 65265174 65265332 -94334451 + (GAAA)n Simple_repeat Simple_repeat 3 161 0 4 1082 468 261 117 19 chr3 65266006 65266270 -94333513 - MER33 DNA MER1_type -39 285 2 4 1082 753 227 44 38 chr3 65266277 65266460 -94333323 + B3A SINE B2 1 184 -14 4 1082 1286 114 16 0 chr3 65266536 65266720 -94333063 + B2_Mm2 SINE B2 1 187 -8 4 1082 778 261 10 5 chr3 65267033 65267229 -94332554 - B3 SINE B2 -6 210 14 4 1082 1562 43 0 11 chr3 65267256 65267445 -94332338 - B2_Mm1a SINE B2 -5 188 2 4 1082 331 344 49 42 chr3 65267447 65267735 -94332048 - L1ME4a LINE L1 -229 5895 5606 4 1082 198 0 0 0 chr3 65267888 65267910 -94331873 + (CAT)n Simple_repeat Simple_repeat 1 22 0 4 1082 243 0 0 0 chr3 65267910 65267937 -94331846 + (TC)n Simple_repeat Simple_repeat 1 27 0 4 1082 492 18 0 0 chr3 65267937 65267993 -94331790 + (CA)n Simple_repeat Simple_repeat 1 57 0 4 1082 1344 55 16 0 chr3 65268053 65268236 -94331547 - B2_Mm2 SINE B2 -8 187 2 4 1082 297 0 0 0 chr3 65268277 65268310 -94331473 + (TG)n Simple_repeat Simple_repeat 2 34 0 4 1082 692 305 98 23 chr3 65268347 65268832 -94330951 - L1MD1 LINE L1 -227 6132 5613 4 1082 1125 85 24 0 chr3 65269449 65269614 -94330169 - Lx2 LINE L1 0 6997 6829 4 1082 1003 147 13 0 chr3 65269614 65269770 -94330013 - Lx2 LINE L1 -353 6644 6487 4 1082 210 118 0 0 chr3 65270115 65270149 -94329634 + (TC)n Simple_repeat Simple_repeat 1 34 0 4 1082 457 237 0 0 chr3 65270185 65270282 -94329501 - ID_B1 SINE B4 -38 186 90 4 1082 24 0 0 0 chr3 65270330 65270354 -94329429 + AT_rich Low_complexity Low_complexity 1 24 0 4 1082 417 297 20 40 chr3 65270417 65270568 -94329215 + RSINE1 SINE B4 3 150 -15 4 1082 635 144 0 8 chr3 65270676 65270790 -94328993 + GA-rich Low_complexity Low_complexity 3 115 0 4 1082 1240 68 0 11 chr3 65270790 65270968 -94328815 + (GGAA)n Simple_repeat Simple_repeat 3 178 0 4 1082 411 21 0 0 chr3 65271891 65271939 -94327844 + (TG)n Simple_repeat Simple_repeat 2 49 0 4 1082 675 241 47 56 chr3 65271992 65272207 -94327576 - B3 SINE B2 -2 214 2 4 1082 758 138 45 15 chr3 65272326 65272458 -94327325 + B1_Mus1 SINE Alu 3 138 -10 4 1082 324 288 96 40 chr3 65272610 65272787 -94326996 + MIR SINE MIR 20 206 -56 4 1082 2093 172 26 8 chr3 65273328 65273710 -94326073 + MTD LTR MaLR 21 409 -10 4 1082 180 135 0 0 chr3 65273793 65273830 -94325953 + (AGGGGG)n Simple_repeat Simple_repeat 3 39 0 4 1083 230 267 17 0 chr3 65274146 65274206 -94325577 + GA-rich Low_complexity Low_complexity 2 62 0 4 1083 198 0 0 0 chr3 65274505 65274527 -94325256 + (C)n Simple_repeat Simple_repeat 1 22 0 4 1083 730 71 0 0 chr3 65274528 65274627 -94325156 - B1_Mus2 SINE Alu -2 145 47 4 1083 428 292 35 129 chr3 65275187 65275419 -94324364 + B3A SINE B2 1 210 -6 4 1083 743 162 80 7 chr3 65275432 65275569 -94324214 - B1_Mm SINE Alu 0 147 1 4 1083 414 0 0 0 chr3 65276037 65276083 -94323700 + (TTTA)n Simple_repeat Simple_repeat 2 47 0 4 1083 1194 55 0 0 chr3 65276083 65276228 -94323555 - B1_Mus2 SINE Alu -2 145 1 4 1083 1377 259 138 27 chr3 65276544 65277172 -94322611 - L1MB7 LINE L1 -27 6157 5460 4 1083 612 238 211 10 chr3 65277177 65277385 -94322398 - ORR1D2 LTR MaLR -4 366 117 4 1083 360 191 212 25 chr3 65277458 65277576 -94322207 - Lx7 LINE L1 -1 7695 7556 4 1083 3391 121 29 0 chr3 65277576 65278089 -94321694 - RLTR11A LTR ERVK 0 528 1 4 1083 953 130 21 21 chr3 65278422 65278611 -94321172 - RMER17C LTR ERVK 0 410 222 4 1083 479 191 38 0 chr3 65278583 65278688 -94321095 - RMER17C LTR ERVK -301 109 1 4 1083 200 226 78 31 chr3 65279506 65279570 -94320213 - MER5B DNA MER1_type -2 176 110 4 1083 307 339 8 8 chr3 65279641 65279769 -94320014 - MER5B DNA MER1_type -50 128 1 4 1083 348 83 0 0 chr3 65280109 65280157 -94319626 + (TG)n Simple_repeat Simple_repeat 1 48 0 4 1083 195 42 0 0 chr3 65280157 65280180 -94319603 + (CG)n Simple_repeat Simple_repeat 2 25 0 4 1083 238 324 120 65 chr3 65280569 65280936 -94318847 - L3b LINE CR1 -86 396 10 4 1083 197 336 36 22 chr3 65280927 65281064 -94318719 - MER5B DNA MER1_type -4 174 36 4 1083 245 254 132 35 chr3 65281207 65281319 -94318464 + MER5B DNA MER1_type 19 141 -37 4 1083 408 209 0 110 chr3 65281319 65281437 -94318346 + B4 SINE B4 1 105 -187 4 1083 429 174 10 80 chr3 65281440 65281540 -94318243 + B1_Mur2 SINE Alu 57 149 0 4 1083 613 270 7 14 chr3 65281544 65281683 -94318100 + B4A SINE B4 82 219 -73 4 1083 408 40 0 0 chr3 65281691 65281741 -94318042 + (TC)n Simple_repeat Simple_repeat 2 51 0 4 1083 251 197 183 0 chr3 65281747 65281774 -94318009 + PB1D10 SINE Alu 24 107 -10 4 1083 254 114 68 0 chr3 65281774 65281818 -94317965 + ID_B1 SINE B4 168 214 -10 4 1083 373 325 37 12 chr3 65281898 65282060 -94317723 + MER5A DNA MER1_type 1 166 -23 4 1083 3184 53 8 2 chr3 65282494 65282888 -94316895 + MTA_Mm LTR MaLR 1 396 0 4 1083 1270 232 125 34 chr3 65282920 65283304 -94316479 + MTD LTR MaLR 1 419 0 4 1083 387 287 84 15 chr3 65283511 65283642 -94316141 + MER96 DNA hAT 27 166 -9 4 1083 243 0 0 0 chr3 65283727 65283754 -94316029 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 4 1083 220 274 88 95 chr3 65285497 65285634 -94314149 + MIRb SINE MIR 41 176 -92 4 1083 285 29 0 0 chr3 65286042 65286076 -94313707 + (TTTG)n Simple_repeat Simple_repeat 4 37 0 4 1083 228 135 0 0 chr3 65286677 65286714 -94313069 + (A)n Simple_repeat Simple_repeat 1 37 0 4 1083 1689 153 204 61 chr3 65286798 65287343 -94312440 - RMER20B LTR ERVK 0 627 5 4 1083 199 211 138 46 chr3 65288517 65288626 -94311157 + L2a LINE L2 3041 3159 -267 4 1083 383 56 19 0 chr3 65288668 65288722 -94311061 + (TTTC)n Simple_repeat Simple_repeat 2 56 0 4 1083 181 0 69 0 chr3 65288729 65288758 -94311025 + (TTTG)n Simple_repeat Simple_repeat 3 33 0 4 1083 1207 68 0 0 chr3 65288765 65288912 -94310871 - B1_Mus2 SINE Alu 0 147 1 4 1083 3302 119 176 10 chr3 65289050 65289345 -94310438 + RMER6C LTR ERVK 1 332 -358 4 1083 360 0 0 0 chr3 65289345 65289385 -94310398 + (CA)n Simple_repeat Simple_repeat 2 41 0 4 1083 3302 119 176 10 chr3 65289385 65289681 -94310102 + RMER6C LTR ERVK 333 689 -1 4 1083 429 197 0 0 chr3 65290235 65290311 -94309472 + PB1D10 SINE Alu 22 97 -20 4 1083 256 250 52 13 chr3 65290342 65290419 -94309364 - Charlie8 DNA MER1_type -2229 199 120 4 1083 366 220 44 32 chr3 65290498 65290618 -94309165 + MT2A LTR ERVL 1 122 -462 5 1083 594 140 0 0 chr3 65290647 65290747 -94309036 + (GA)n Simple_repeat Simple_repeat 1 100 0 5 1083 250 280 32 21 chr3 65291012 65291107 -94308676 + MIRc SINE MIR 80 175 -93 5 1083 418 288 161 12 chr3 65291272 65291515 -94308268 + L2a LINE L2 1493 1771 -1648 5 1083 192 295 44 33 chr3 65291592 65291683 -94308100 + L2a LINE L2 1983 2074 -1345 5 1083 432 198 23 139 chr3 65291819 65291948 -94307835 - PB1D7 SINE Alu -6 114 1 5 1083 383 306 146 33 chr3 65291948 65292222 -94307561 + L2a LINE L2 2202 2506 -913 5 1083 198 255 0 0 chr3 65292250 65292297 -94307486 - L2b LINE L2 -5 3370 3324 5 1083 511 336 156 9 chr3 65292399 65292738 -94307045 + L2a LINE L2 2624 3012 -407 5 1083 243 125 0 0 chr3 65293338 65293378 -94306405 + (TG)n Simple_repeat Simple_repeat 2 41 0 5 1083 186 209 0 0 chr3 65293378 65293421 -94306362 + (TA)n Simple_repeat Simple_repeat 1 43 0 5 1083 1796 154 78 6 chr3 65293509 65293843 -94305940 - MTC LTR MaLR -63 358 1 5 1083 270 356 55 22 chr3 65293852 65294033 -94305750 + L2a LINE L2 3007 3193 -233 5 1083 344 290 9 18 chr3 65295154 65295263 -94304520 + B1F1 SINE Alu 1 108 -41 5 1083 765 272 81 69 chr3 65295299 65295705 -94304078 + RMER5 LTR ERV1 114 524 -10 5 1083 249 108 0 0 chr3 65295754 65295791 -94303992 + (CAAT)n Simple_repeat Simple_repeat 3 39 0 5 1083 1266 191 4 13 chr3 65296517 65296756 -94303027 - MTC LTR MaLR 0 421 185 5 1083 207 0 0 0 chr3 65296766 65296789 -94302994 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 5 1083 1371 73 15 40 chr3 65296801 65297000 -94302783 + B2_Mm2 SINE B2 2 195 0 5 1083 776 119 90 0 chr3 65297053 65297187 -94302596 - MTC LTR MaLR -269 152 7 5 1083 331 346 88 30 chr3 65297468 65297620 -94302163 - MER113 DNA MER1_type -146 375 206 5 1083 186 43 0 0 chr3 65297620 65297643 -94302140 + (TAA)n Simple_repeat Simple_repeat 1 23 0 5 1083 331 346 88 30 chr3 65297643 65297785 -94301998 - MER113 DNA MER1_type -316 205 64 5 1083 206 118 0 0 chr3 65297973 65298007 -94301776 + (T)n Simple_repeat Simple_repeat 1 34 0 5 1083 405 39 0 0 chr3 65299437 65299488 -94300295 + (CTTG)n Simple_repeat Simple_repeat 1 51 0 5 1083 715 204 0 0 chr3 65299494 65299631 -94300152 - B1_Mur1 SINE Alu -1 148 12 5 1083 1981 139 36 61 chr3 65299819 65300211 -94299572 - ORR1B1 LTR MaLR 0 394 13 5 1083 456 306 0 32 chr3 65300695 65300820 -94298963 - B4A SINE B4 -65 227 107 5 1083 572 62 0 0 chr3 65301045 65301126 -94298657 - B1_Mur4 SINE Alu 0 150 70 5 1083 522 207 45 0 chr3 65301519 65301630 -94298153 + B1_Mur1 SINE Alu 12 127 -22 5 1083 315 0 0 0 chr3 65301755 65301790 -94297993 + (TG)n Simple_repeat Simple_repeat 2 36 0 5 1083 246 283 127 13 chr3 65302227 65302389 -94297394 + MIR SINE MIR 35 207 -61 5 1083 626 336 58 31 chr3 65302510 65302734 -94297049 + MLT1I LTR MaLR 147 376 -35 5 1083 923 258 98 69 chr3 65303749 65303868 -94295915 + ORR1D2 LTR MaLR 15 116 -254 5 1083 2333 108 3 6 chr3 65303868 65304193 -94295590 - ORR1A2 LTR MaLR 0 327 4 5 1083 923 258 98 69 chr3 65304193 65304419 -94295364 + ORR1D2 LTR MaLR 117 370 0 5 1083 381 267 155 28 chr3 65304426 65304780 -94295003 + L1M4 LINE L1 2507 2905 -3241 5 1083 487 207 11 0 chr3 65305213 65305300 -94294483 + B1_Mur2 SINE Alu 56 143 -6 5 1083 40 37 0 0 chr3 65305307 65305361 -94294422 + AT_rich Low_complexity Low_complexity 1 54 0 5 1083 288 262 57 28 chr3 65305506 65305612 -94294171 + PB1D10 SINE Alu 9 117 0 5 1083 21886 90 25 16 chr3 65305612 65309170 -94290613 + L1_Mur1 LINE L1 209 4274 -1612 5 1083 279 277 121 28 chr3 65309442 65309583 -94290200 + L1M5 LINE L1 5394 5547 -617 5 1083 331 221 55 46 chr3 65309751 65309860 -94289923 + L1MB4 LINE L1 6028 6137 -43 5 1083 1176 36 7 0 chr3 65309863 65310001 -94289782 + B1_Mus1 SINE Alu 1 139 -9 5 1083 396 0 0 0 chr3 65310114 65310158 -94289625 + (TA)n Simple_repeat Simple_repeat 2 45 0 5 1083 1191 48 7 0 chr3 65311605 65311752 -94288031 + B1_Mus1 SINE Alu 1 148 0 5 1083 847 207 77 5 chr3 65311800 65311994 -94287789 + ID_B1 SINE B4 6 213 -11 5 1083 290 244 110 31 chr3 65312339 65312466 -94287317 + Charlie19a DNA Charlie 221 357 -29 5 1083 827 247 234 35 chr3 65313243 65313711 -94286072 + MT2A LTR ERVL 3 513 -88 5 1083 261 265 0 0 chr3 65313762 65313830 -94285953 + (TA)n Simple_repeat Simple_repeat 2 69 0 5 1083 317 104 12 7 chr3 65313845 65313926 -94285857 + MT2A LTR ERVL 467 555 0 5 1083 237 299 64 82 chr3 65314671 65314842 -94284941 + B4 SINE B4 2 169 -123 5 1083 216 0 0 0 chr3 65314968 65314992 -94284791 + (CA)n Simple_repeat Simple_repeat 1 24 0 5 1083 183 80 0 0 chr3 65316268 65316293 -94283490 + (CA)n Simple_repeat Simple_repeat 1 25 0 5 1083 262 188 166 62 chr3 65316395 65316482 -94283301 + Tigger6b DNA MER2_type 1272 1363 -234 5 1083 987 181 77 39 chr3 65316482 65316689 -94283094 - B3 SINE B2 0 216 2 5 1083 262 188 166 62 chr3 65316689 65316794 -94282989 + Tigger6b DNA MER2_type 1364 1484 -113 5 1083 300 216 0 26 chr3 65316799 65316875 -94282908 - Lx8 LINE L1 -1 7472 7399 5 1083 375 293 0 0 chr3 65316911 65316993 -94282790 - RSINE1 SINE B4 -2 163 82 5 1083 396 289 47 47 chr3 65316994 65317121 -94282662 - ID_B1 SINE B4 -14 210 84 5 1083 509 291 12 76 chr3 65317287 65317458 -94282325 + RSINE1 SINE B4 4 163 -2 5 1083 462 18 0 0 chr3 65317463 65317518 -94282265 + (TAGA)n Simple_repeat Simple_repeat 4 58 0 5 1083 267 31 0 0 chr3 65317579 65317611 -94282172 + (TGAA)n Simple_repeat Simple_repeat 3 34 0 5 1083 340 167 35 82 chr3 65317618 65317703 -94282080 + PB1D9 SINE Alu 40 120 0 5 1083 22 0 0 0 chr3 65317888 65317910 -94281873 + AT_rich Low_complexity Low_complexity 1 22 0 5 1083 354 165 25 12 chr3 65318030 65318110 -94281673 + ORR1D2 LTR MaLR 1 81 -289 5 1083 251 268 139 16 chr3 65318148 65318277 -94281506 - L1MC4 LINE L1 -799 7243 7099 5 1083 298 0 23 23 chr3 65318395 65318438 -94281345 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 5 1083 360 218 50 121 chr3 65318786 65318927 -94280856 + B1F1 SINE Alu 18 148 -1 5 1083 569 200 53 23 chr3 65319038 65319171 -94280612 - B1F SINE Alu -7 142 6 5 1083 26 30 0 0 chr3 65319233 65319266 -94280517 + AT_rich Low_complexity Low_complexity 1 33 0 5 1083 564 207 81 0 chr3 65319325 65319436 -94280347 - B3 SINE B2 -89 127 8 5 1083 405 0 0 0 chr3 65319438 65319483 -94280300 + (CTG)n Simple_repeat Simple_repeat 2 46 0 5 1083 639 126 0 0 chr3 65319506 65319609 -94280174 - B1_Mur3 SINE Alu -5 144 42 5 1083 261 179 35 35 chr3 65319691 65319749 -94280034 - B1_Mur4 SINE Alu -90 60 3 5 1083 360 224 23 12 chr3 65320174 65320260 -94279523 + RSINE1 SINE B4 41 127 -38 5 1083 285 39 39 19 chr3 65320275 65320327 -94279456 + (CA)n Simple_repeat Simple_repeat 1 53 0 5 1083 1320 187 170 27 chr3 65321876 65322206 -94277577 + RMER15 LTR ERVL 194 570 -5 5 1083 421 260 73 0 chr3 65322266 65322389 -94277394 + RSINE1 SINE B4 1 132 -33 5 1083 216 111 0 0 chr3 65322390 65322426 -94277357 + (CAGA)n Simple_repeat Simple_repeat 3 38 0 5 1083 27 0 0 0 chr3 65322443 65322470 -94277313 + AT_rich Low_complexity Low_complexity 1 27 0 5 1083 524 295 170 20 chr3 65322503 65322898 -94276885 + L2a LINE L2 2362 2815 -604 5 1083 283 363 76 8 chr3 65322935 65323171 -94276612 + L2a LINE L2 2964 3215 -211 5 1083 3404 33 5 0 chr3 65323237 65323631 -94276152 - MTA_Mm LTR MaLR 0 396 1 5 1083 9339 35 5 0 chr3 65323631 65324724 -94275059 - MTA_Mm-int LTR MaLR 0 1098 1 5 1083 3492 35 0 0 chr3 65324724 65325120 -94274663 - MTA_Mm LTR MaLR 0 396 1 5 1083 215 167 191 29 chr3 65325803 65325871 -94273912 + B1F SINE Alu 6 84 -65 5 1083 667 209 39 39 chr3 65326161 65326340 -94273443 + B3A SINE B2 3 181 -17 5 1083 284 305 45 30 chr3 65328029 65328161 -94271622 + RSINE1 SINE B4 20 153 -12 5 1083 263 292 48 102 chr3 65328822 65329009 -94270774 - MLT1J LTR MaLR -109 403 227 5 1083 707 169 20 16 chr3 65329164 65329418 -94270365 + GA-rich Low_complexity Low_complexity 1 255 0 5 1083 410 217 163 0 chr3 65329622 65329714 -94270069 + U6 snRNA snRNA 1 107 0 5 1083 796 188 104 31 chr3 65329746 65329938 -94269845 - B3 SINE B2 -9 207 2 5 1083 1206 61 0 0 chr3 65330099 65330246 -94269537 + B1_Mus2 SINE Alu 1 147 0 5 1083 210 37 0 0 chr3 65330246 65330273 -94269510 + (A)n Simple_repeat Simple_repeat 1 27 0 5 1083 276 270 0 0 chr3 65330273 65330336 -94269447 + MLT1G3 LTR MaLR 69 131 -358 5 1083 376 341 81 75 chr3 65330360 65330471 -94269312 + MLT1G3 LTR MaLR 223 327 -268 5 1083 1129 81 0 0 chr3 65330471 65330619 -94269164 - B1_Mus1 SINE Alu 0 148 1 5 1083 376 341 81 75 chr3 65330619 65330878 -94268905 + MLT1G3 LTR MaLR 328 594 -1 5 1083 363 243 60 51 chr3 65331021 65331138 -94268645 + Charlie12 DNA MER1_type 7 124 -2749 5 1083 257 137 0 38 chr3 65333513 65333566 -94266217 + (CGTG)n Simple_repeat Simple_repeat 4 54 0 5 1083 29 0 0 0 chr3 65333824 65333853 -94265930 + AT_rich Low_complexity Low_complexity 1 29 0 5 1083 296 289 64 36 chr3 65334544 65334684 -94265099 - Tigger12c DNA MER2_type -63 671 528 5 1083 556 231 112 0 chr3 65336607 65336750 -94263033 - B3 SINE B2 -17 199 41 5 1083 1050 44 7 15 chr3 65336854 65336991 -94262792 + B1_Mur4 SINE Alu 15 150 0 5 1083 189 74 0 0 chr3 65336993 65337020 -94262763 + (A)n Simple_repeat Simple_repeat 1 27 0 5 1083 450 77 606 32 chr3 65342018 65342112 -94257671 - B1_Mus1 SINE Alu 0 148 1 5 1083 951 198 73 6 chr3 65343597 65343775 -94256008 - B3 SINE B2 -25 191 2 5 1083 249 57 0 0 chr3 65344835 65344870 -94254913 + (TTTG)n Simple_repeat Simple_repeat 1 35 0 5 1083 755 118 16 25 chr3 65344880 65345002 -94254781 - B1_Mur4 SINE Alu -7 143 23 5 1083 347 202 122 41 chr3 65345181 65345279 -94254504 - PB1D10 SINE Alu -9 108 3 5 1083 600 254 96 7 chr3 65345939 65346074 -94253709 - RSINE1 SINE B4 -17 148 2 5 1083 940 57 139 0 chr3 65348224 65348346 -94251437 - B1_Mm SINE Alu -8 139 1 5 1083 27 49 0 0 chr3 65349091 65349132 -94250651 + AT_rich Low_complexity Low_complexity 1 41 0 5 1083 454 275 85 48 chr3 65349337 65349493 -94250290 + ID_B1 SINE B4 81 238 -54 6 1083 25 31 0 0 chr3 65350311 65350343 -94249440 + AT_rich Low_complexity Low_complexity 1 32 0 6 1083 349 300 40 0 chr3 65352120 65352220 -94247563 + B1F2 SINE Alu 41 144 -5 6 1083 26 30 0 0 chr3 65352641 65352674 -94247109 + AT_rich Low_complexity Low_complexity 1 33 0 6 1083 379 261 129 35 chr3 65353621 65353848 -94245935 + L1MA5 LINE L1 5681 5942 -214 6 1083 919 221 64 30 chr3 65353947 65354180 -94245603 - MTEa LTR MaLR 0 379 139 6 1083 192 77 0 0 chr3 65355575 65355601 -94244182 + (T)n Simple_repeat Simple_repeat 1 26 0 6 1083 1018 47 0 0 chr3 65355601 65355728 -94244055 - B1_Mus2 SINE Alu 0 147 21 6 1083 21 0 0 0 chr3 65359014 65359035 -94240748 + AT_rich Low_complexity Low_complexity 1 21 0 6 1083 427 229 174 0 chr3 65359766 65359875 -94239908 - B1_Mus2 SINE Alu -18 129 2 6 1083 559 279 37 0 chr3 65360108 65360244 -94239539 - B1F SINE Alu -7 142 2 6 1083 228 319 14 0 chr3 65360365 65360437 -94239346 - ID_B1 SINE B4 -38 186 114 6 1083 225 151 123 99 chr3 65361196 65361277 -94238506 - ID4 SINE ID 0 83 1 6 1083 261 257 95 1 chr3 65361822 65361911 -94237872 + MLT1D LTR MaLR 6 106 -399 6 1083 354 160 0 26 chr3 65361926 65362003 -94237780 - L1Md_F2 LINE L1 0 6582 6508 6 1083 440 220 68 29 chr3 65362165 65362268 -94237515 - B3 SINE B2 -25 191 85 6 1083 310 316 56 107 chr3 65363800 65364052 -94235731 - ORR1E LTR MaLR -80 314 76 6 1083 239 282 43 22 chr3 65364457 65364565 -94235218 - L1MC LINE L1 -2224 5658 5553 6 1083 450 0 0 0 chr3 65364643 65364693 -94235090 + (TG)n Simple_repeat Simple_repeat 1 50 0 6 1083 875 203 0 26 chr3 65364720 65364872 -94234911 + B1_Mur1 SINE Alu 1 148 -1 6 1083 284 214 0 79 chr3 65364961 65365037 -94234746 - ID4 SINE ID -13 70 1 6 1083 296 269 35 12 chr3 65366842 65366938 -94232845 + B1F SINE Alu 2 99 -21 6 1083 376 291 0 12 chr3 65367621 65367701 -94232082 - PB1D10 SINE Alu -36 81 3 6 1083 311 239 70 44 chr3 65367809 65367923 -94231860 - L2a LINE L2 -7 3419 3303 6 1083 278 281 55 106 chr3 65368037 65368236 -94231547 + MIRc SINE MIR 8 196 -72 6 1083 261 0 0 0 chr3 65369056 65369085 -94230698 + (TG)n Simple_repeat Simple_repeat 1 29 0 6 1083 555 296 30 41 chr3 65369088 65369257 -94230526 - B3A SINE B2 -31 167 1 6 1083 245 273 101 0 chr3 65369426 65369525 -94230258 + PB1D9 SINE Alu 12 120 0 6 1083 873 201 0 26 chr3 65370652 65370805 -94228978 + B1_Mur1 SINE Alu 1 149 0 6 1083 711 90 0 0 chr3 65370822 65370922 -94228861 + (GGAA)n Simple_repeat Simple_repeat 4 103 0 6 1083 28 71 0 0 chr3 65371276 65371332 -94228451 + AT_rich Low_complexity Low_complexity 1 56 0 6 1083 389 258 10 10 chr3 65371475 65371573 -94228210 + B1_Mur1 SINE Alu 51 148 -1 6 1083 24 32 0 0 chr3 65371573 65371604 -94228179 + AT_rich Low_complexity Low_complexity 1 31 0 6 1083 216 283 160 0 chr3 65371659 65371765 -94228018 - MIRb SINE MIR -45 223 101 6 1083 369 62 0 0 chr3 65372734 65372782 -94227001 + (TA)n Simple_repeat Simple_repeat 2 49 0 6 1083 790 199 13 20 chr3 65373481 65373630 -94226153 - B1_Mur2 SINE Alu -1 148 1 6 1083 241 275 94 63 chr3 65373691 65373850 -94225933 - RSINE1 SINE B4 0 165 2 6 1083 317 319 51 22 chr3 65373879 65374017 -94225766 + MIRb SINE MIR 116 257 -11 6 1083 307 333 79 14 chr3 65374345 65374485 -94225298 + MLT1F LTR MaLR 374 522 -26 6 1083 236 337 11 11 chr3 65375769 65375862 -94223921 + CT-rich Low_complexity Low_complexity 1 93 0 6 1083 467 211 55 9 chr3 65375869 65375979 -94223804 - B1F SINE Alu 0 149 35 6 1083 464 302 122 0 chr3 65377108 65377280 -94222503 - RMER30 DNA MER1_type -4 198 6 6 1083 184 185 37 0 chr3 65377391 65377445 -94222338 + C-rich Low_complexity Low_complexity 1 56 0 6 1083 5027 151 37 5 chr3 65377451 65378285 -94221498 + MurERV4-int LTR ERVK 195 1055 -4205 6 1083 2402 65 3 50 chr3 65378289 65378627 -94221156 - ORR1A2 LTR MaLR -5 322 1 6 1083 3078 160 94 48 chr3 65378627 65379139 -94220644 - ORR1A2-int LTR MaLR 0 1963 1412 6 1083 2986 52 102 3 chr3 65379139 65379503 -94220280 + MTB LTR MaLR 1 400 0 6 1083 3078 150 100 44 chr3 65379503 65379740 -94220043 - ORR1A2-int LTR MaLR -552 1411 1215 6 1083 1760 117 0 0 chr3 65379740 65379979 -94219804 + MurERV4-int LTR ERVK 5022 5260 0 6 1083 2387 151 31 118 chr3 65379979 65380029 -94219754 + RMER4A LTR ERVK 1 47 -419 6 1083 1419 79 22 0 chr3 65380029 65380207 -94219576 + B2_Mm2 SINE B2 5 186 -9 6 1083 2387 151 31 118 chr3 65380207 65380666 -94219117 + RMER4A LTR ERVK 48 466 0 6 1083 2313 240 52 92 chr3 65380844 65381912 -94217871 - RMER17B LTR ERVK 0 908 1 6 1083 189 0 0 0 chr3 65381953 65381974 -94217809 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 6 1083 790 242 19 19 chr3 65382011 65382167 -94217616 - RSINE1 SINE B4 -7 158 3 6 1083 24 0 0 0 chr3 65382608 65382632 -94217151 + AT_rich Low_complexity Low_complexity 1 24 0 6 1083 624 232 8 8 chr3 65382635 65382761 -94217022 - B1_Mur1 SINE Alu -1 148 23 6 1083 705 197 0 8 chr3 65382875 65382998 -94216785 - RSINE1 SINE B4 -13 152 31 6 1083 291 54 0 0 chr3 65384763 65384800 -94214983 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 6 1083 333 0 0 0 chr3 65385407 65385444 -94214339 + (A)n Simple_repeat Simple_repeat 1 37 0 6 1083 599 165 7 119 chr3 65385850 65385978 -94213805 + ID_B1 SINE B4 91 212 -12 6 1083 282 29 0 0 chr3 65385978 65386013 -94213770 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 6 1083 1196 75 7 0 chr3 65386022 65386169 -94213614 + B1_Mus1 SINE Alu 1 148 0 6 1083 599 165 7 119 chr3 65386169 65386181 -94213602 + ID_B1 SINE B4 213 224 0 6 1083 630 327 93 109 chr3 65386211 65386695 -94213088 + Charlie1a DNA MER1_type 1 476 -979 6 1083 389 265 46 116 chr3 65386672 65386886 -94212897 + Charlie1a DNA MER1_type 1144 1338 -117 6 1083 1022 156 17 106 chr3 65386886 65387123 -94212660 - B3 SINE B2 0 216 1 6 1083 389 265 46 116 chr3 65387123 65387211 -94212572 + Charlie1a DNA MER1_type 1339 1425 -30 6 1083 211 319 45 92 chr3 65387275 65387434 -94212349 + MIR SINE MIR 42 215 -53 6 1083 2577 80 6 50 chr3 65387459 65387801 -94211982 - ORR1A2 LTR MaLR 0 327 1 6 1083 441 103 0 0 chr3 65388598 65388666 -94211117 + (TC)n Simple_repeat Simple_repeat 1 68 0 6 1083 1154 61 14 0 chr3 65388666 65388813 -94210970 - B1_Mur4 SINE Alu -1 149 1 6 1083 230 281 158 0 chr3 65388819 65388901 -94210882 + MER5B DNA MER1_type 10 104 -74 6 1083 306 169 0 0 chr3 65388918 65388983 -94210800 + GA-rich Low_complexity Low_complexity 1 65 0 6 1083 385 74 0 0 chr3 65390001 65390055 -94209728 - B1_Mur4 SINE Alu -5 145 92 6 1083 231 103 0 0 chr3 65392044 65392083 -94207700 + (A)n Simple_repeat Simple_repeat 1 39 0 6 1083 475 292 43 85 chr3 65392529 65392787 -94206996 - L1M3e LINE L1 -5312 1718 1472 6 1083 293 202 76 57 chr3 65393452 65393557 -94206226 + L1MCc LINE L1 1428 1534 -4889 6 1083 748 84 0 0 chr3 65393574 65393681 -94206102 + B3 SINE B2 2 108 -108 6 1083 23 0 0 0 chr3 65393721 65393744 -94206039 + AT_rich Low_complexity Low_complexity 1 23 0 6 1083 238 281 0 0 chr3 65393915 65393972 -94205811 + L1MCc LINE L1 1934 1990 -5138 6 1083 363 23 0 0 chr3 65393977 65394021 -94205762 + (TC)n Simple_repeat Simple_repeat 1 44 0 6 1083 207 0 0 0 chr3 65394021 65394043 -94205740 + (CA)n Simple_repeat Simple_repeat 1 23 0 6 1083 248 194 29 43 chr3 65394044 65394114 -94205669 - MLT1A1 LTR MaLR -1 407 339 6 1083 230 383 23 23 chr3 65394161 65394292 -94205491 - MLT1A1 LTR MaLR -181 193 63 6 1083 493 100 0 0 chr3 65394423 65394493 -94205290 + B1_Mus1 SINE Alu 1 70 -78 6 1083 395 263 170 40 chr3 65394554 65394949 -94204834 - L1MC LINE L1 -3035 3111 2667 6 1083 252 143 0 0 chr3 65395038 65395080 -94204703 + (T)n Simple_repeat Simple_repeat 1 42 0 6 1083 640 76 11 0 chr3 65395080 65395172 -94204611 - B1_Mur4 SINE Alu 0 150 58 6 1083 506 233 61 135 chr3 65395208 65395283 -94204500 + L1MCc LINE L1 4149 4227 -2714 6 1083 213 39 0 0 chr3 65395283 65395309 -94204474 + (CAAAA)n Simple_repeat Simple_repeat 5 30 0 6 1083 506 233 61 135 chr3 65395309 65395385 -94204398 + L1MCc LINE L1 4228 4301 -2640 6 1083 816 256 61 9 chr3 65395385 65395598 -94204185 + ID_B1 SINE B4 1 224 0 6 1083 506 233 61 135 chr3 65395598 65395772 -94204011 + L1MCc LINE L1 4302 4451 -2490 6 1083 210 300 11 91 chr3 65395813 65395901 -94203882 + B1F SINE Alu 27 107 -42 6 1083 274 286 10 0 chr3 65395927 65396000 -94203783 - PB1D10 SINE Alu -46 104 27 6 1083 182 62 0 30 chr3 65396013 65396046 -94203737 + (TTTTTG)n Simple_repeat Simple_repeat 3 34 0 6 1083 457 167 27 74 chr3 65396047 65396196 -94203587 + L1MC LINE L1 3660 3801 -2345 6 1083 307 250 50 0 chr3 65396296 65396376 -94203407 + ID_B1 SINE B4 132 215 -9 6 1083 470 296 91 43 chr3 65396388 65396854 -94202929 + L1MCc LINE L1 4688 5180 -1761 6 1083 292 277 123 45 chr3 65396971 65397126 -94202657 + L1MC LINE L1 4456 4622 -1524 6 1083 378 0 0 0 chr3 65397446 65397488 -94202295 + (TG)n Simple_repeat Simple_repeat 2 43 0 6 1083 650 226 32 0 chr3 65397495 65397619 -94202164 - B3A SINE B2 -55 143 16 6 1083 628 217 196 22 chr3 65397834 65398142 -94201641 - MLT1A0 LTR MaLR -1 364 3 6 1083 1534 159 97 56 chr3 65398235 65398627 -94201156 - RMER17C LTR ERVK 0 410 3 6 1083 783 260 56 28 chr3 65398627 65398841 -94200942 + ID_B1 SINE B4 5 224 0 6 1083 436 268 7 104 chr3 65398968 65399122 -94200661 + MER20 DNA MER1_type 33 171 -48 6 1083 692 287 107 27 chr3 65399192 65399557 -94200226 + L1MC4a LINE L1 6210 6603 -1279 6 1083 213 327 0 0 chr3 65399754 65399809 -94199974 + (CACG)n Simple_repeat Simple_repeat 4 58 0 6 1083 393 214 66 28 chr3 65399868 65399974 -94199809 + MLT1A1 LTR MaLR 299 408 0 6 1083 591 53 0 0 chr3 65400051 65400126 -94199657 + (TCTA)n Simple_repeat Simple_repeat 3 77 0 6 1083 311 308 14 43 chr3 65400184 65400323 -94199460 + L1MC4a LINE L1 6749 6883 -1112 6 1083 2371 70 33 51 chr3 65400361 65400694 -94199089 - ORR1A2 LTR MaLR 0 327 1 6 1083 383 92 15 0 chr3 65400785 65400850 -94198933 + (TG)n Simple_repeat Simple_repeat 1 66 0 6 1083 362 177 110 44 chr3 65400861 65400997 -94198786 + L1MC4a LINE L1 6921 7065 -817 6 1083 261 286 16 0 chr3 65401015 65401078 -94198705 + PB1D10 SINE Alu 46 109 -8 6 1083 1443 84 0 5 chr3 65401131 65401322 -94198461 + B2_Mm2 SINE B2 1 190 -5 7 1083 202 227 23 0 chr3 65401788 65401832 -94197951 - MIR SINE MIR -35 227 183 7 1083 245 89 22 0 chr3 65402037 65402082 -94197701 + (TGGGGG)n Simple_repeat Simple_repeat 2 47 0 7 1083 672 162 127 75 chr3 65402856 65403029 -94196754 - URR1A DNA MER1_type -43 183 2 7 1083 673 236 112 10 chr3 65403209 65403406 -94196377 + ID_B1 SINE B4 2 218 -6 7 1083 2333 92 21 0 chr3 65403816 65404151 -94195632 - ORR1B1 LTR MaLR 0 394 53 7 1083 413 103 15 0 chr3 65404609 65404677 -94195106 + (TTTTG)n Simple_repeat Simple_repeat 2 70 0 7 135 1508 176 55 7 chr3 65404677 65404969 -94194814 + MTD LTR MaLR 12 317 -102 7 1084 243 0 0 0 chr3 65407519 65407546 -94192237 + (A)n Simple_repeat Simple_repeat 1 27 0 7 1084 346 347 41 29 chr3 65408112 65408284 -94191499 - L1MEf LINE L1 -5076 1124 951 7 1084 758 318 86 40 chr3 65408297 65408847 -94190936 + L1MCb LINE L1 582 1156 -4889 7 1084 944 145 90 0 chr3 65408855 65409021 -94190762 + B3 SINE B2 20 200 -16 7 1084 524 15 15 0 chr3 65409023 65409088 -94190695 + (TAGA)n Simple_repeat Simple_repeat 1 66 0 7 1084 702 269 24 11 chr3 65409177 65409420 -94190363 + B4A SINE B4 9 292 0 7 1084 419 0 20 0 chr3 65410982 65411033 -94188750 + (CCA)n Simple_repeat Simple_repeat 3 54 0 7 1084 323 286 65 19 chr3 65412025 65412132 -94187651 + PB1 SINE Alu 16 127 0 7 1084 21 0 0 0 chr3 65413283 65413304 -94186479 + AT_rich Low_complexity Low_complexity 1 21 0 7 1084 462 281 8 0 chr3 65413555 65413676 -94186107 - ID_B1 SINE B4 -2 222 101 7 1084 201 154 0 0 chr3 65413866 65413905 -94185878 + CT-rich Low_complexity Low_complexity 1 39 0 7 1084 396 288 45 34 chr3 65414656 65414832 -94184951 + Lx8 LINE L1 6133 6310 -1163 7 1084 691 185 189 23 chr3 65414852 65415112 -94184671 - Lx8 LINE L1 -330 7143 6841 7 1084 441 217 217 0 chr3 65415137 65415266 -94184517 + Lx8 LINE L1 7185 7341 -132 7 1084 267 310 49 31 chr3 65416170 65416333 -94183450 - LTR50 LTR ERVL -155 640 475 7 1084 180 0 0 0 chr3 65419239 65419259 -94180524 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 7 1084 243 0 0 0 chr3 65419260 65419287 -94180496 + (CAAAA)n Simple_repeat Simple_repeat 4 30 0 7 1084 457 354 27 7 chr3 65420338 65420486 -94179297 + RSINE1 SINE B4 13 163 -2 7 1084 355 319 133 45 chr3 65420623 65420932 -94178851 - L1M5 LINE L1 -748 5398 5063 7 1084 303 209 21 95 chr3 65420946 65421041 -94178742 + MT2B LTR ERVL 152 239 -362 7 1084 492 211 0 81 chr3 65420963 65421087 -94178696 + PB1D9 SINE Alu 7 120 0 7 1084 26 30 0 0 chr3 65421381 65421414 -94178369 + AT_rich Low_complexity Low_complexity 1 33 0 7 1084 363 372 94 63 chr3 65421467 65421972 -94177811 + L2a LINE L2 1968 2496 -923 7 1084 1816 161 55 25 chr3 65421972 65422334 -94177449 + ORR1D1 LTR MaLR 2 374 0 7 1084 363 369 101 41 chr3 65422334 65423159 -94176624 + L2a LINE L2 2497 3424 -2 7 1084 403 331 24 6 chr3 65423885 65424052 -94175731 + MLT1A0 LTR MaLR 2 171 -194 7 1084 22 0 0 0 chr3 65424105 65424127 -94175656 + AT_rich Low_complexity Low_complexity 1 22 0 7 1084 243 301 116 58 chr3 65424360 65424533 -94175250 - L1MC LINE L1 -2105 5777 5595 7 1084 966 159 0 126 chr3 65425242 65425465 -94174318 + B2_Mm2 SINE B2 1 195 0 7 1084 241 256 22 11 chr3 65425551 65425707 -94174076 + (CATATA)n Simple_repeat Simple_repeat 1 157 0 7 1084 310 250 40 50 chr3 65425738 65425839 -94173944 + L1MA4A LINE L1 5694 5793 -507 7 1084 186 227 0 0 chr3 65425839 65425883 -94173900 + (CATATA)n Simple_repeat Simple_repeat 1 44 0 7 1084 483 244 42 36 chr3 65425886 65426052 -94173731 + L1MA4A LINE L1 5783 5949 -354 7 1084 2921 55 55 0 chr3 65426077 65426456 -94173327 - MTB LTR MaLR 0 400 1 7 1084 446 335 35 12 chr3 65426479 65426648 -94173135 - MLT2B3 LTR ERVL -73 481 309 7 1084 201 271 68 41 chr3 65427074 65427147 -94172636 - MIR SINE MIR -22 240 166 7 1084 2636 214 63 42 chr3 65427769 65428556 -94171227 - RMER1B Other Other -18 1048 84 7 1084 317 328 23 39 chr3 65428959 65429089 -94170694 - B4 SINE B4 -163 129 2 7 1084 291 253 0 117 chr3 65432054 65432148 -94167635 - ID SINE ID -141 83 1 7 1084 3700 59 38 4 chr3 65432296 65432771 -94167012 - L1_Mus1 LINE L1 0 6567 6077 7 1084 288 342 69 17 chr3 65432811 65432927 -94166856 - MIRb SINE MIR -115 153 32 7 1084 387 318 46 8 chr3 65433019 65433149 -94166634 - ID_B1 SINE B4 -89 135 1 7 1084 1718 270 83 32 chr3 65433294 65434111 -94165672 - L1MA8 LINE L1 -295 5996 5126 7 1084 21 0 0 0 chr3 65434111 65434132 -94165651 + AT_rich Low_complexity Low_complexity 1 21 0 7 1084 296 266 53 11 chr3 65434327 65434422 -94165361 + PB1D7 SINE Alu 22 120 0 7 1084 299 85 0 21 chr3 65434468 65434516 -94165267 + (GGA)n Simple_repeat Simple_repeat 1 47 0 7 1084 1265 73 6 0 chr3 65434525 65434703 -94165080 + (GGGAA)n Simple_repeat Simple_repeat 1 179 0 7 1084 312 227 61 43 chr3 65434743 65434858 -94164925 + ID_B1 SINE B4 105 221 -3 7 1084 379 228 0 0 chr3 65435549 65435641 -94164142 - B3A SINE B2 -96 102 11 7 1084 391 202 12 0 chr3 65435773 65435857 -94163926 - PB1D10 SINE Alu -10 107 23 7 1084 562 222 12 47 chr3 65435909 65436051 -94163732 + PB1D9 SINE Alu 8 150 0 7 1084 2706 45 1 4 chr3 65436061 65436390 -94163393 + L1Md_F2 LINE L1 5280 5586 -297 7 1084 7754 68 10 1 chr3 65436391 65437375 -94162408 + L1Md_F2 LINE L1 5588 6580 -2 7 1084 1118 95 0 0 chr3 65437479 65437627 -94162156 + B1_Mus1 SINE Alu 1 148 0 7 1084 189 0 0 0 chr3 65437627 65437648 -94162135 + (A)n Simple_repeat Simple_repeat 1 21 0 7 1084 340 277 61 68 chr3 65437938 65438085 -94161698 - MER33 DNA MER1_type 0 324 179 7 1084 283 289 66 0 chr3 65438184 65438260 -94161523 + ID4 SINE ID 3 83 0 7 1084 516 37 62 0 chr3 65439054 65439135 -94160648 + (GAAA)n Simple_repeat Simple_repeat 3 88 0 7 1084 279 281 62 10 chr3 65439147 65439244 -94160539 + PB1D10 SINE Alu 5 106 -11 7 1084 255 283 121 110 chr3 65440647 65441012 -94158771 - MamRep434 DNA TcMar -57 369 1 7 1084 202 209 0 0 chr3 65443149 65443192 -94156591 + (TG)n Simple_repeat Simple_repeat 2 44 0 7 1084 389 238 0 0 chr3 65443365 65443445 -94156338 - ID4_ SINE ID -3 80 1 7 1084 960 253 214 3 chr3 65443781 65444094 -94155689 + MTEa LTR MaLR 1 379 0 7 1084 712 269 71 94 chr3 65444096 65444169 -94155614 + Tigger6a DNA MER2_type 5 66 -1017 7 1084 941 159 0 0 chr3 65444169 65444307 -94155476 - B1_Mus1 SINE Alu -6 142 5 7 1084 905 278 83 68 chr3 65444307 65444761 -94155022 + Tigger6a DNA MER2_type 41 534 -549 7 1084 1130 157 64 34 chr3 65444988 65445192 -94154591 - B3 SINE B2 -5 211 2 7 1084 345 221 74 0 chr3 65445261 65445356 -94154427 + Lx8 LINE L1 6862 6963 -510 7 1084 1008 260 178 25 chr3 65445396 65445835 -94153948 + Lx8 LINE L1 6958 7463 -10 7 1084 432 266 8 34 chr3 65445948 65446065 -94153718 - PB1D10 SINE Alu -1 116 3 7 1084 351 0 0 0 chr3 65446122 65446161 -94153622 + (TG)n Simple_repeat Simple_repeat 1 39 0 7 1084 290 115 0 16 chr3 65446324 65446386 -94153397 + (TTTG)n Simple_repeat Simple_repeat 4 64 0 7 1084 945 176 0 13 chr3 65446386 65446536 -94153247 - B1_Mur2 SINE Alu 0 149 2 7 1084 552 327 15 15 chr3 65446926 65447128 -94152655 + Lx8 LINE L1 7004 7205 -268 7 1084 2409 95 13 33 chr3 65447128 65447520 -94152263 + RLTR11B LTR ERVK 70 453 0 7 1084 1073 236 266 17 chr3 65447607 65447900 -94151883 - ORR1D2 LTR MaLR 0 370 5 7 1084 747 182 78 28 chr3 65448131 65448272 -94151511 + B1_Mur1 SINE Alu 2 149 0 7 1084 656 241 15 0 chr3 65448298 65448435 -94151348 + B1_Mur1 SINE Alu 4 142 -7 7 1084 441 234 173 14 chr3 65448754 65448893 -94150890 - L2a LINE L2 0 3426 3266 7 1084 280 269 39 0 chr3 65448908 65448986 -94150797 + PB1D7 SINE Alu 1 81 -39 7 1084 320 148 16 0 chr3 65448999 65449060 -94150723 + GA-rich Low_complexity Low_complexity 3 64 0 7 1084 26 0 0 0 chr3 65449162 65449188 -94150595 + AT_rich Low_complexity Low_complexity 1 26 0 7 1084 2003 137 44 63 chr3 65449322 65449735 -94150048 + RMER15 LTR ERVL 2 406 -169 7 1084 223 320 148 0 chr3 65449748 65449870 -94149913 - L2 LINE L2 -797 2622 2483 7 1084 396 0 0 0 chr3 65450001 65450045 -94149738 + (GA)n Simple_repeat Simple_repeat 1 44 0 7 1084 283 337 52 44 chr3 65450167 65450331 -94149452 + MIR SINE MIR 10 176 -92 7 1084 639 147 205 14 chr3 65450898 65451083 -94148700 + RMER21A LTR ERV1 299 611 -336 7 1084 23 0 0 0 chr3 65453543 65453566 -94146217 + AT_rich Low_complexity Low_complexity 1 23 0 7 1084 23 33 0 0 chr3 65453848 65453878 -94145905 + AT_rich Low_complexity Low_complexity 1 30 0 7 1084 605 255 39 29 chr3 65454022 65454322 -94145461 + MLT1A0 LTR MaLR 18 408 0 7 1084 308 226 179 0 chr3 65454398 65454482 -94145301 + L1MB2 LINE L1 6066 6164 -7 7 1084 198 0 0 0 chr3 65454553 65454575 -94145208 + (CAAAA)n Simple_repeat Simple_repeat 4 25 0 7 1084 203 355 61 35 chr3 65454964 65455078 -94144705 + MIR SINE MIR 125 241 -21 7 1084 274 208 76 25 chr3 65455386 65455465 -94144318 - ID4 SINE ID 0 83 1 7 1084 21 0 0 0 chr3 65455469 65455490 -94144293 + AT_rich Low_complexity Low_complexity 1 21 0 7 1084 489 294 37 72 chr3 65455561 65455773 -94144010 + B4 SINE B4 3 218 -74 7 1084 291 54 0 0 chr3 65455777 65455814 -94143969 + (CA)n Simple_repeat Simple_repeat 2 38 0 7 1084 779 264 40 48 chr3 65455868 65456119 -94143664 - B4A SINE B4 -2 290 42 8 1084 446 237 10 30 chr3 65456113 65456213 -94143570 + RSINE1 SINE B4 33 130 -35 8 1084 267 196 0 0 chr3 65456479 65456523 -94143260 + B3 SINE B2 1 44 -172 8 1084 1298 179 120 7 chr3 65456523 65456799 -94142984 - ORR1D1 LTR MaLR -2 372 66 8 1084 260 310 96 72 chr3 65457273 65457398 -94142385 - LTR79 LTR ERVL -329 198 71 8 1084 195 167 119 0 chr3 65457509 65457551 -94142232 + MIR SINE MIR 54 100 -108 8 1084 261 337 51 0 chr3 65457521 65457619 -94142164 + L2b LINE L2 3245 3347 -28 8 1084 312 102 0 0 chr3 65458422 65458471 -94141312 + (A)n Simple_repeat Simple_repeat 1 49 0 8 1084 381 303 61 0 chr3 65459576 65459675 -94140108 + PB1D7 SINE Alu 9 113 -7 8 1084 932 222 60 25 chr3 65459696 65459895 -94139888 + B3 SINE B2 5 210 -6 8 1084 213 39 0 0 chr3 65461953 65461979 -94137804 + (TTCA)n Simple_repeat Simple_repeat 1 26 0 8 1084 225 312 0 38 chr3 65464482 65464510 -94135273 - ID_B1 SINE B4 -24 200 124 8 1084 282 231 0 0 chr3 65464510 65464562 -94135221 - PB1D10 SINE Alu -23 94 43 8 1084 461 263 150 28 chr3 65464672 65464852 -94134931 - ID_B1 SINE B4 -18 206 5 8 1084 877 250 78 5 chr3 65465329 65465534 -94134249 - ID_B1 SINE B4 -1 223 4 8 1084 243 0 0 0 chr3 65465749 65465776 -94134007 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 8 1084 229 344 22 0 chr3 65465786 65465876 -94133907 - B1_Mus1 SINE Alu -51 97 6 8 1084 587 264 50 35 chr3 65465976 65466176 -94133607 - B3 SINE B2 -13 203 1 8 1084 773 193 179 77 chr3 65466527 65466723 -94133060 - B3 SINE B2 0 216 1 8 1084 21 36 0 0 chr3 65468033 65468061 -94131722 + AT_rich Low_complexity Low_complexity 1 28 0 8 1084 1228 48 0 27 chr3 65468104 65468254 -94131529 + B1_Mus2 SINE Alu 2 147 0 8 1084 294 50 0 0 chr3 65468332 65468372 -94131411 + (CA)n Simple_repeat Simple_repeat 2 41 0 8 1084 230 174 0 0 chr3 65468429 65468475 -94131308 - Lx9 LINE L1 -69 7575 7530 8 1084 711 216 26 72 chr3 65468478 65468673 -94131110 - Lx6 LINE L1 -26 7434 7249 8 1084 410 206 141 7 chr3 65468670 65468812 -94130971 - Lx9 LINE L1 -103 7541 7381 8 1084 180 0 0 0 chr3 65471968 65471988 -94127795 + (TC)n Simple_repeat Simple_repeat 2 21 0 8 1084 441 264 101 54 chr3 65472039 65472207 -94127576 - B4A SINE B4 0 292 117 8 1084 751 200 27 20 chr3 65473409 65473557 -94126226 - B1_Mur1 SINE Alu 0 149 1 8 1084 445 55 0 0 chr3 65474931 65474986 -94124797 - MTB_Mm LTR MaLR -352 55 1 8 1084 378 61 0 0 chr3 65474988 65475037 -94124746 + (CGTG)n Simple_repeat Simple_repeat 3 51 0 8 1084 545 315 0 0 chr3 65475063 65475174 -94124609 - RSINE1 SINE B4 -54 111 1 8 1084 419 281 52 9 chr3 65476012 65476127 -94123656 + RSINE1 SINE B4 2 121 -44 8 1084 254 100 67 0 chr3 65478528 65478588 -94121195 + (TG)n Simple_repeat Simple_repeat 2 65 0 8 1084 1695 65 0 0 chr3 65478706 65478921 -94120862 - MTA_Mm LTR MaLR 0 396 182 8 1084 3169 52 26 7 chr3 65478892 65479322 -94120461 - ORR1A0-int LTR MaLR -1354 438 1 8 1084 3263 26 0 0 chr3 65479322 65479668 -94120115 - ORR1A0 LTR MaLR 0 346 1 8 1084 688 265 145 62 chr3 65479920 65480326 -94119457 - L1MD1 LINE L1 -2 6240 5801 8 1084 1430 188 88 63 chr3 65480341 65480965 -94118818 - L1_Mur3 LINE L1 -4360 1520 843 8 1084 665 232 51 45 chr3 65481632 65481808 -94117975 - RMER30 DNA MER1_type -24 178 2 8 1084 239 200 0 0 chr3 65481829 65481874 -94117909 - L1MD LINE L1 -1672 4474 4430 8 1084 310 178 40 24 chr3 65481901 65481996 -94117787 - L1_Mur2 LINE L1 -2002 4141 4040 8 1084 850 87 14 0 chr3 65481996 65482134 -94117649 + (TCC)n Simple_repeat Simple_repeat 2 141 0 8 1084 186 43 0 0 chr3 65482134 65482156 -94117627 + (CACCAT)n Simple_repeat Simple_repeat 4 26 0 8 1084 198 0 0 0 chr3 65482299 65482321 -94117462 + (T)n Simple_repeat Simple_repeat 1 22 0 8 1084 217 188 19 77 chr3 65482491 65482543 -94117240 - RSINE1 SINE B4 -91 74 26 8 1084 22 35 0 0 chr3 65482793 65482822 -94116961 + AT_rich Low_complexity Low_complexity 1 29 0 8 1084 506 271 28 28 chr3 65483899 65484043 -94115740 - B1_Mur1 SINE Alu -1 148 5 8 1084 302 414 45 0 chr3 65484167 65484300 -94115483 - RSINE1 SINE B4 -19 146 8 8 1084 859 254 15 113 chr3 65484331 65484535 -94115248 - B3 SINE B2 -10 185 2 8 1084 1102 66 43 7 chr3 65485069 65485207 -94114576 + B1_Mus2 SINE Alu 2 144 -3 8 1084 306 0 0 0 chr3 65485207 65485241 -94114542 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 8 1084 315 309 190 64 chr3 65485710 65486100 -94113683 + L3 LINE CR1 3945 4383 -106 8 1084 208 368 0 0 chr3 65487124 65487200 -94112583 - MIR3 SINE MIR -25 183 108 8 1084 1557 131 18 0 chr3 65487215 65487437 -94112346 - URR1A DNA MER1_type 0 226 1 8 1084 321 211 70 0 chr3 65488084 65488155 -94111628 + B1F1 SINE Alu 6 81 -68 8 1084 249 296 146 48 chr3 65488780 65488883 -94110900 - PB1D10 SINE Alu -4 113 1 8 1084 723 212 89 6 chr3 65488883 65488960 -94110823 - ID_B1 SINE B4 -132 92 3 8 1084 342 318 81 22 chr3 65489564 65489837 -94109946 - L1MC LINE L1 -1112 5034 4746 8 1084 321 308 80 38 chr3 65490005 65490292 -94109491 - L1M4 LINE L1 -1635 4511 4213 8 1084 1593 210 65 8 chr3 65490651 65491007 -94108776 + MTD LTR MaLR 43 418 -1 8 1084 255 196 211 11 chr3 65491009 65491112 -94108671 - B1F SINE Alu -3 146 25 8 1084 202 181 69 0 chr3 65491269 65491341 -94108442 + (TA)n Simple_repeat Simple_repeat 1 77 0 8 1084 1267 93 75 6 chr3 65491460 65491633 -94108150 + B2_Mm2 SINE B2 2 186 -9 8 1084 223 273 36 0 chr3 65491641 65491696 -94108087 + ID_B1 SINE B4 79 135 -89 8 1084 246 32 0 0 chr3 65491796 65491827 -94107956 + (TG)n Simple_repeat Simple_repeat 1 31 0 8 1084 682 170 0 9 chr3 65492130 65492237 -94107546 + B1_Mur1 SINE Alu 30 135 -14 8 1084 235 270 112 0 chr3 65492745 65492834 -94106949 - BC1_Mm scRNA scRNA -38 114 16 8 1084 354 251 48 102 chr3 65492866 65493052 -94106731 - L1MDb LINE L1 -839 5567 5392 8 1084 393 222 76 17 chr3 65493240 65493359 -94106424 - L1MD1 LINE L1 -1 6241 6116 8 1084 1843 163 139 5 chr3 65493845 65494234 -94105549 - RMER10A LTR ERVL 0 442 2 8 1084 395 221 87 65 chr3 65494632 65494816 -94104967 - L1MDb LINE L1 -5214 1195 1008 8 1084 468 301 160 10 chr3 65494840 65495188 -94104595 + MLT2B3 LTR ERVL 8 407 -113 8 1084 528 16 0 0 chr3 65495274 65495335 -94104448 + (TG)n Simple_repeat Simple_repeat 2 62 0 8 1084 295 94 38 0 chr3 65495422 65495475 -94104308 - MTE2a LTR MaLR 0 379 325 8 1084 997 283 9 17 chr3 65495508 65495738 -94104045 - MTE2a LTR MaLR -126 253 26 8 1084 29 47 0 0 chr3 65497008 65497051 -94102732 + AT_rich Low_complexity Low_complexity 1 43 0 8 1084 231 314 75 48 chr3 65497148 65497295 -94102488 + MIR SINE MIR 19 169 -93 8 1084 1860 198 91 0 chr3 65497384 65497723 -94102060 + ORR1D2 LTR MaLR 1 370 0 8 1084 1602 52 5 16 chr3 65497945 65498139 -94101644 - B2_Mm1t SINE B2 -1 192 1 8 1084 1178 230 158 3 chr3 65498441 65498751 -94101032 - MTE2b LTR MaLR -5 374 17 8 1084 1824 122 122 0 chr3 65498751 65499062 -94100721 + RMER6D LTR ERVK 1 349 -371 8 1084 21 36 0 0 chr3 65499250 65499278 -94100505 + AT_rich Low_complexity Low_complexity 1 28 0 8 1084 260 188 16 0 chr3 65499283 65499347 -94100436 + GA-rich Low_complexity Low_complexity 3 67 0 8 1084 1999 178 52 0 chr3 65499380 65499763 -94100020 + RMER6D LTR ERVK 312 714 -6 8 1084 420 226 68 10 chr3 65500940 65501043 -94098740 - PB1D9 SINE Alu 0 120 12 1 1084 356 226 140 22 chr3 65501248 65501384 -94098399 - B3 SINE B2 0 216 65 2 1084 1690 206 84 16 chr3 65501846 65502226 -94097557 - MTD LTR MaLR -13 406 1 3 1084 21 0 0 0 chr3 65502238 65502259 -94097524 + AT_rich Low_complexity Low_complexity 1 21 0 4 1084 4074 240 22 16 chr3 65503499 65504522 -94095261 - Lx7 LINE L1 -280 7416 6387 5 1084 4464 190 63 44 chr3 65504538 65504574 -94095209 - L1_Mur3 LINE L1 -3 5877 5844 6 1084 3122 50 5 17 chr3 65504574 65504977 -94094806 + MTB LTR MaLR 3 400 0 7 1084 4464 190 63 44 chr3 65504977 65505904 -94093879 - L1_Mur3 LINE L1 -37 5843 4923 6 1084 1258 97 0 11 chr3 65505904 65506082 -94093701 - B2_Mm2 SINE B2 -18 177 2 8 1084 4464 190 63 44 chr3 65506082 65506288 -94093495 - L1_Mur3 LINE L1 -958 4922 4685 6 1084 3291 106 35 8 chr3 65506338 65507110 -94092673 + L1VL4 LINE L1 363 1153 -2406 9 1084 2070 174 20 84 chr3 65507107 65507692 -94092091 - L1_Mur3 LINE L1 -1180 4700 4153 6 1084 2176 204 31 185 chr3 65507681 65508213 -94091570 - L1_Mur3 LINE L1 -3581 2299 1794 6 1084 760 146 0 8 chr3 65508213 65508337 -94091446 - URR1B DNA MER1_type -1 224 102 1 1084 2176 204 31 185 chr3 65508337 65508777 -94091006 - L1_Mur3 LINE L1 -3581 1793 1373 6 1084 186 43 0 0 chr3 65508912 65508935 -94090848 + (T)n Simple_repeat Simple_repeat 1 23 0 1 1084 1095 99 0 0 chr3 65508939 65509080 -94090703 - B1_Mus2 SINE Alu -6 141 1 1 1084 531 239 0 0 chr3 65509484 65509593 -94090190 + PB1D9 SINE Alu 2 110 -10 1 1084 243 88 0 0 chr3 65510414 65510448 -94089335 + (GA)n Simple_repeat Simple_repeat 2 35 0 1 1084 294 239 60 0 chr3 65510669 65510736 -94089047 + B2_Mm2 SINE B2 3 73 -122 1 1084 1045 142 71 0 chr3 65510743 65510940 -94088843 - ORR1C2 LTR MaLR 0 384 174 1 1084 198 0 0 0 chr3 65510942 65510964 -94088819 + (GGGA)n Simple_repeat Simple_repeat 3 24 0 1 1084 707 196 50 127 chr3 65510964 65511232 -94088551 - ORR1D1 LTR MaLR -119 265 1 1 1084 305 310 31 87 chr3 65511232 65511351 -94088432 + B3A SINE B2 76 187 -11 1 1084 233 91 0 0 chr3 65511481 65511513 -94088270 + B1_Mus1 SINE Alu 10 41 -107 2 1084 802 211 7 0 chr3 65511513 65511660 -94088123 + B1_Mur1 SINE Alu 2 149 0 2 1084 984 202 15 10 chr3 65511663 65511863 -94087920 + B3 SINE B2 1 201 -15 2 1084 755 193 7 21 chr3 65511916 65512059 -94087724 + B1_Mur4 SINE Alu 10 150 0 2 1084 256 335 42 100 chr3 65512886 65513145 -94086638 + MIR SINE MIR 19 262 0 2 1084 324 298 60 0 chr3 65513208 65513292 -94086491 + ID_B1 SINE B4 4 92 -132 2 1084 255 31 0 0 chr3 65513353 65513385 -94086398 + (CAA)n Simple_repeat Simple_repeat 3 34 0 2 1084 318 50 0 0 chr3 65513428 65513468 -94086315 + (ATTG)n Simple_repeat Simple_repeat 2 41 0 2 1084 224 392 92 0 chr3 65513814 65513840 -94085943 + B1F1 SINE Alu 2 143 -6 2 1084 391 281 67 10 chr3 65513840 65513944 -94085839 + ID_B1 SINE B4 109 218 -6 2 1084 973 161 6 17 chr3 65514946 65515123 -94084660 + B2_Mm2 SINE B2 1 175 -20 2 1084 255 61 0 0 chr3 65515402 65515435 -94084348 + (TGGA)n Simple_repeat Simple_repeat 1 33 0 3 1084 240 328 12 33 chr3 65515582 65515714 -94084069 - ID_B1 SINE B4 -164 128 3 3 1084 792 249 127 0 chr3 65516542 65516779 -94083004 + MLT1A0 LTR MaLR 99 365 0 3 1084 427 270 13 122 chr3 65517624 65517780 -94082003 - RSINE1 SINE B4 -23 142 4 3 1084 890 179 108 5 chr3 65517917 65518102 -94081681 - B3 SINE B2 -12 204 1 3 1084 323 287 190 63 chr3 65519476 65519807 -94079976 + MLT1A1 LTR MaLR 1 373 -35 3 1084 514 345 152 76 chr3 65519855 65520653 -94079130 + MLT-int LTR MaLR 74 931 -804 3 1084 260 323 93 53 chr3 65520774 65520995 -94078788 - ORR1D1 LTR MaLR -114 245 11 3 1084 392 318 8 8 chr3 65521135 65521265 -94078518 + ORR1E LTR MaLR 8 137 -222 3 1084 651 305 117 94 chr3 65521390 65521927 -94077856 + MLT-int LTR MaLR 1023 1545 -190 3 1084 415 246 173 22 chr3 65522323 65522502 -94077281 - B4A SINE B4 -86 206 1 3 1084 384 119 0 0 chr3 65522547 65522606 -94077177 + (CAG)n Simple_repeat Simple_repeat 1 59 0 4 1084 417 208 28 19 chr3 65522831 65522939 -94076844 - B1F1 SINE Alu 0 149 41 4 1084 516 132 0 0 chr3 65523072 65523155 -94076628 + (TG)n Simple_repeat Simple_repeat 2 84 0 4 1084 343 324 132 75 chr3 65523450 65524010 -94075773 - L1ME4a LINE L1 -213 5911 5320 4 1084 992 212 64 0 chr3 65524050 65524253 -94075530 - B3 SINE B2 0 216 1 4 1084 560 172 0 11 chr3 65525406 65525500 -94074283 + B1_Mus1 SINE Alu 1 93 -55 4 1084 500 261 38 23 chr3 65525537 65525670 -94074113 + B1F SINE Alu 8 142 -7 4 1084 442 281 164 19 chr3 65525827 65526034 -94073749 - MER2 DNA MER2_type -1 344 108 4 1084 203 88 29 0 chr3 65526041 65526075 -94073708 + (TA)n Simple_repeat Simple_repeat 1 35 0 4 1084 215 216 0 0 chr3 65526088 65526139 -94073644 + (CATA)n Simple_repeat Simple_repeat 1 51 0 4 1084 275 279 15 0 chr3 65526142 65526210 -94073573 - ID4 SINE ID -10 73 5 5 1084 21 0 0 0 chr3 65526452 65526473 -94073310 + AT_rich Low_complexity Low_complexity 1 21 0 5 1084 788 274 41 16 chr3 65528280 65528525 -94071258 - ORR1D2 LTR MaLR -5 365 115 5 1084 494 279 14 14 chr3 65528551 65528689 -94071094 - B1F1 SINE Alu 0 149 12 5 1084 216 0 0 0 chr3 65528716 65528740 -94071043 + (TG)n Simple_repeat Simple_repeat 1 24 0 5 1084 464 301 107 20 chr3 65528794 65528991 -94070792 + HAL1 LINE L1 2293 2506 -1 5 1084 22 0 0 0 chr3 65529009 65529031 -94070752 + AT_rich Low_complexity Low_complexity 1 22 0 5 1084 667 289 23 91 chr3 65529597 65529905 -94069878 - B4A SINE B4 -1 291 5 5 1084 669 251 88 18 chr3 65530433 65530603 -94069180 - B3 SINE B2 -34 182 1 5 1084 897 298 45 7 chr3 65531591 65532031 -94067752 + L1MC1 LINE L1 5876 6332 -1 5 1084 362 327 49 62 chr3 65532201 65532426 -94067357 + L1MEb LINE L1 339 560 -5510 6 1084 895 204 40 25 chr3 65532473 65532674 -94067109 - B3 SINE B2 -12 204 1 6 1084 3501 251 91 142 chr3 65532861 65534620 -94065163 + Tigger1 DNA MER2_type 24 1693 -725 6 1084 415 218 127 5 chr3 65534626 65534780 -94065003 - MTD LTR MaLR -14 405 249 6 1084 466 273 39 0 chr3 65534788 65534916 -94064867 + RMER15 LTR ERVL 443 575 0 6 1084 25 0 0 0 chr3 65535380 65535405 -94064378 + AT_rich Low_complexity Low_complexity 1 25 0 6 1084 254 230 120 0 chr3 65535504 65535604 -94064179 + L1M2 LINE L1 2898 3009 -3134 6 1084 332 254 8 0 chr3 65535604 65535722 -94064061 + (TA)n Simple_repeat Simple_repeat 2 120 0 6 1084 242 211 67 9 chr3 65535775 65535880 -94063903 + L1M2 LINE L1 3094 3204 -2939 6 1084 464 198 36 19 chr3 65535885 65535984 -94063799 + B1_Mur1 SINE Alu 7 135 -14 6 135 252 0 0 0 chr3 65535984 65536012 -94063771 + (TAA)n Simple_repeat Simple_repeat 1 28 0 6 1085 464 182 34 11 chr3 65536012 65536026 -94063757 + B1_Mur1 SINE Alu 136 149 0 6 1085 1893 264 88 52 chr3 65536084 65537248 -94062535 + L1_Mur3 LINE L1 3241 4447 -1433 7 1085 217 357 40 79 chr3 65537382 65537610 -94062173 + L2c LINE L2 3092 3310 -77 7 1085 227 282 73 0 chr3 65538197 65538307 -94061476 + L1MD2 LINE L1 5751 5868 -491 7 1085 1457 290 138 11 chr3 65538357 65539030 -94060753 - Lx8 LINE L1 0 7473 6711 7 1085 180 0 0 0 chr3 65539030 65539050 -94060733 + (TTGG)n Simple_repeat Simple_repeat 2 21 0 7 1085 1457 290 138 11 chr3 65539050 65539122 -94060661 - Lx8 LINE L1 -763 6710 6633 7 1085 255 267 31 82 chr3 65539270 65539315 -94060468 + L1MD2 LINE L1 6064 6108 -251 7 1085 1594 208 58 15 chr3 65539315 65539715 -94060068 + MTD LTR MaLR 1 417 -2 7 1085 255 267 31 82 chr3 65539715 65539767 -94060016 + L1MD2 LINE L1 6109 6156 -203 7 1085 21 36 0 0 chr3 65539869 65539897 -94059886 + AT_rich Low_complexity Low_complexity 1 28 0 7 1085 184 354 53 23 chr3 65540111 65540244 -94059539 - MIRc SINE MIR -130 138 2 7 1085 729 174 68 0 chr3 65540268 65540400 -94059383 - B1_Mus1 SINE Alu 0 148 8 7 1085 231 61 0 0 chr3 65540407 65540440 -94059343 + (TCTCTG)n Simple_repeat Simple_repeat 4 36 0 7 1085 1219 80 0 0 chr3 65540442 65540605 -94059178 - B2_Mm2 SINE B2 -31 164 2 8 1085 282 193 0 0 chr3 65540740 65540797 -94058986 + GA-rich Low_complexity Low_complexity 2 58 0 8 1085 229 266 50 60 chr3 65542384 65542484 -94057299 - RLTR25B LTR ERVK -488 540 442 8 1085 632 197 16 24 chr3 65542397 65542522 -94057261 - B1_Mur1 SINE Alu -23 126 3 8 1085 28 0 0 0 chr3 65544209 65544237 -94055546 + AT_rich Low_complexity Low_complexity 1 28 0 8 1085 324 301 91 20 chr3 65544241 65544495 -94055288 - L1MB2 LINE L1 -9 6162 5891 8 1085 378 283 111 24 chr3 65544799 65545096 -94054687 - L1MB2 LINE L1 -751 5389 5067 8 1085 270 0 0 0 chr3 65545294 65545324 -94054459 + (GA)n Simple_repeat Simple_repeat 1 30 0 8 1085 22 35 0 0 chr3 65545395 65545424 -94054359 + AT_rich Low_complexity Low_complexity 1 29 0 8 1085 219 255 0 0 chr3 65545444 65545495 -94054288 + (TATATG)n Simple_repeat Simple_repeat 3 53 0 8 1085 622 286 0 0 chr3 65545506 65545632 -94054151 - RSINE1 SINE B4 -19 146 21 8 1085 383 271 20 30 chr3 65545720 65545819 -94053964 - PB1D10 SINE Alu -4 113 16 9 1085 944 75 0 0 chr3 65546017 65546150 -94053633 - L1_Mus2 LINE L1 0 6566 6434 9 1085 21 0 0 0 chr3 65546281 65546302 -94053481 + AT_rich Low_complexity Low_complexity 1 21 0 9 1085 972 249 0 19 chr3 65546685 65546898 -94052885 - B3 SINE B2 -7 209 1 9 1085 601 274 22 48 chr3 65546902 65547132 -94052651 - B4A SINE B4 -66 226 3 9 1085 327 217 0 0 chr3 65547431 65547491 -94052292 - MTE-int LTR MaLR -125 1455 1396 9 1085 423 252 16 102 chr3 65547476 65547530 -94052253 + MTE2a LTR MaLR 263 318 -61 9 1085 180 0 0 0 chr3 65547530 65547550 -94052233 + (TTG)n Simple_repeat Simple_repeat 2 21 0 9 1085 1219 21 0 0 chr3 65547550 65547690 -94052093 - B1_Mus2 SINE Alu -7 140 1 9 1085 423 252 16 102 chr3 65547690 65547762 -94052021 + MTE2a LTR MaLR 319 378 -1 9 1085 570 244 279 41 chr3 65547764 65548080 -94051703 - MTE-int LTR MaLR -808 772 382 9 1085 528 321 135 27 chr3 65548083 65548342 -94051441 - RMER15 LTR ERVL -14 561 275 9 1085 258 160 0 0 chr3 65548387 65548437 -94051346 + (CA)n Simple_repeat Simple_repeat 1 50 0 1 1085 265 275 116 0 chr3 65548646 65548715 -94051068 - BC1_Mm scRNA scRNA -72 80 4 1 1085 351 350 51 6 chr3 65548716 65548894 -94050889 + L1M4 LINE L1 3582 3767 -2379 1 1085 485 331 37 5 chr3 65549056 65549247 -94050536 - MIR SINE MIR -8 254 58 1 1085 252 77 0 0 chr3 65549738 65549777 -94050006 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 1 1085 25 0 0 0 chr3 65549786 65549811 -94049972 + AT_rich Low_complexity Low_complexity 1 25 0 1 1085 2970 49 8 3 chr3 65549816 65550187 -94049596 - L1_Mus1 LINE L1 -6 6561 6189 1 1085 243 310 110 0 chr3 65550725 65550825 -94048958 + L1MC LINE L1 5508 5618 -2264 1 1085 306 164 0 0 chr3 65551298 65551353 -94048430 + A-rich Low_complexity Low_complexity 1 55 0 1 1085 2286 264 93 17 chr3 65551485 65552468 -94047315 - L1MC3 LINE L1 -223 7562 6506 1 1085 441 233 62 89 chr3 65553505 65553651 -94046132 - MLT1N2 LTR MaLR -49 513 372 1 1085 1163 289 104 14 chr3 65554071 65554655 -94045128 - Lx9 LINE L1 -791 6853 6052 1 1085 249 269 0 0 chr3 65555682 65555760 -94044023 - L1ME1 LINE L1 -2 6177 6100 1 1085 487 200 12 0 chr3 65555869 65555954 -94043829 - URR1B DNA MER1_type -139 86 1 1 1085 1175 191 25 0 chr3 65555990 65556194 -94043589 + B3 SINE B2 1 209 -7 1 1085 381 241 112 0 chr3 65556457 65556573 -94043210 - L1MB7 LINE L1 -239 5945 5817 1 1085 331 271 35 13 chr3 65556769 65556892 -94042891 - L1_Mur3 LINE L1 -1102 2812 2691 1 1085 232 270 0 0 chr3 65556898 65556961 -94042822 + T-rich Low_complexity Low_complexity 1 63 0 1 1085 444 62 0 0 chr3 65556966 65557030 -94042753 + (TATG)n Simple_repeat Simple_repeat 4 67 0 1 1085 1003 135 0 28 chr3 65557031 65557176 -94042607 - B1_Mur4 SINE Alu -6 144 4 1 1085 370 258 207 27 chr3 65557205 65557524 -94042259 - L1M2 LINE L1 -3430 2710 2330 1 1085 6053 199 89 88 chr3 65557587 65559401 -94040382 - Lx7 LINE L1 -1 7695 5879 1 1085 1970 144 30 15 chr3 65559401 65559739 -94040044 + ORR1B1 LTR MaLR 7 349 -45 1 1085 39200 12 1 7 chr3 65559741 65565115 -94034668 + L1Md_A LINE L1 248 5586 -297 1 1085 9366 16 0 0 chr3 65565115 65566111 -94033672 + L1Md_A LINE L1 5587 6582 0 1 1085 329 106 0 0 chr3 65566118 65566165 -94033618 + ORR1B1 LTR MaLR 340 386 -8 1 1085 238 103 382 0 chr3 65566166 65566234 -94033549 - L1_Mur3 LINE L1 -1 5879 5786 1 1085 2284 174 44 104 chr3 65566230 65566328 -94033455 - L1_Mur3 LINE L1 -4073 1807 1710 1 1085 2310 144 73 5 chr3 65566328 65566675 -94033108 - ORR1B1 LTR MaLR 0 394 27 1 1085 324 0 0 0 chr3 65566675 65566711 -94033072 + (TG)n Simple_repeat Simple_repeat 2 37 0 1 1085 2310 144 73 5 chr3 65566711 65566732 -94033051 - ORR1B1 LTR MaLR -368 26 2 1 1085 3584 176 64 60 chr3 65566732 65567924 -94031859 - L1_Mur3 LINE L1 -4171 1709 514 1 1085 204 156 0 94 chr3 65569083 65569168 -94030615 + (CCCA)n Simple_repeat Simple_repeat 4 80 0 1 1085 201 167 0 0 chr3 65569538 65569574 -94030209 + (CAA)n Simple_repeat Simple_repeat 2 37 0 1 1085 654 122 0 0 chr3 65570005 65570103 -94029680 + URR1A DNA MER1_type 80 177 -49 1 1085 195 243 0 0 chr3 65570502 65570539 -94029244 - MIR SINE MIR -192 70 34 1 1085 267 231 19 0 chr3 65570755 65570807 -94028976 + 5S rRNA rRNA 2 54 -67 1 1085 507 152 476 0 chr3 65572291 65572436 -94027347 - B3 SINE B2 0 216 3 1 1085 822 130 0 0 chr3 65572445 65572576 -94027207 + (TTCC)n Simple_repeat Simple_repeat 2 132 0 1 1085 216 0 0 0 chr3 65573994 65574018 -94025765 + (GCTG)n Simple_repeat Simple_repeat 1 24 0 1 1085 425 214 90 15 chr3 65574135 65574268 -94025515 + L1MA8 LINE L1 6003 6145 -146 1 1085 23 68 0 0 chr3 65574372 65574416 -94025367 + AT_rich Low_complexity Low_complexity 1 44 0 1 1085 1196 68 0 13 chr3 65574485 65574634 -94025149 - B1_Mus1 SINE Alu 0 148 2 1 1085 422 128 56 56 chr3 65574643 65574751 -94025032 - Lx LINE L1 0 6654 6547 1 1085 4742 102 3 6 chr3 65574754 65575432 -94024351 - Lx2 LINE L1 -413 6584 5909 1 1085 905 75 0 0 chr3 65575432 65575539 -94024244 - U6 snRNA snRNA 0 107 1 1 1085 334 265 70 29 chr3 65575539 65575591 -94024192 - L1Md_F2 LINE L1 -675 5907 5857 1 1085 420 37 0 0 chr3 65575608 65575662 -94024121 + (TAGA)n Simple_repeat Simple_repeat 2 55 0 1 1085 252 0 0 0 chr3 65575662 65575689 -94024094 + (GGAA)n Simple_repeat Simple_repeat 1 28 0 1 1085 268 321 47 9 chr3 65576195 65576302 -94023481 - Charlie13a DNA Charlie -5 1509 1399 1 1085 979 248 98 40 chr3 65576487 65576576 -94023207 - RLTR20C LTR ERVK 0 534 446 1 1085 252 0 0 0 chr3 65576576 65576604 -94023179 + (CA)n Simple_repeat Simple_repeat 2 29 0 1 1085 979 248 98 40 chr3 65576604 65576841 -94022942 - RLTR20C LTR ERVK -89 445 191 1 1085 309 324 133 77 chr3 65577485 65577754 -94022029 + B4A SINE B4 16 290 -2 1 1085 582 203 0 0 chr3 65578503 65578626 -94021157 + (TG)n Simple_repeat Simple_repeat 1 123 0 1 1085 411 363 7 36 chr3 65578652 65578792 -94020991 - RSINE1 SINE B4 -13 152 17 1 1085 392 247 0 47 chr3 65578822 65578928 -94020855 + B3A SINE B2 19 110 -85 1 1085 210 37 0 0 chr3 65578995 65579022 -94020761 + (TTG)n Simple_repeat Simple_repeat 2 28 0 1 1085 591 266 65 0 chr3 65579631 65579770 -94020013 + B3 SINE B2 1 148 -68 1 1085 533 76 0 12 chr3 65579779 65579859 -94019924 + (CATA)n Simple_repeat Simple_repeat 1 79 0 1 1085 341 268 0 35 chr3 65580036 65580121 -94019662 + ID4_ SINE ID 2 83 0 1 1085 986 235 0 36 chr3 65580256 65580450 -94019333 - ID_B1 SINE B4 -7 217 31 1 1085 375 181 0 0 chr3 65580452 65580524 -94019259 + (TA)n Simple_repeat Simple_repeat 1 72 0 1 1085 215 31 31 0 chr3 65580523 65580555 -94019228 + (GA)n Simple_repeat Simple_repeat 2 34 0 1 1085 839 204 20 82 chr3 65580562 65580806 -94018977 - MT2B LTR ERVL -131 470 238 1 1085 570 167 64 24 chr3 65580803 65580935 -94018848 - MT2B LTR ERVL -471 130 5 1 1085 663 170 51 32 chr3 65580945 65581103 -94018680 - RMER15 LTR ERVL -382 193 33 1 1085 246 259 17 0 chr3 65581127 65581185 -94018598 - RMER15 LTR ERVL -516 59 1 1 1085 260 273 0 0 chr3 65581186 65581252 -94018531 + B1F SINE Alu 83 148 -1 1 1085 22 0 0 0 chr3 65581309 65581331 -94018452 + AT_rich Low_complexity Low_complexity 1 22 0 1 1085 806 149 7 0 chr3 65581651 65581799 -94017984 + CT-rich Low_complexity Low_complexity 1 149 0 1 1085 400 109 0 0 chr3 65581799 65581863 -94017920 - Lx LINE L1 -2 6652 6589 1 1085 1105 92 43 0 chr3 65582761 65582902 -94016881 + B1_Mus2 SINE Alu 1 147 0 1 1085 771 236 7 7 chr3 65582926 65583075 -94016708 + B1_Mur2 SINE Alu 1 149 0 1 1085 1673 174 84 56 chr3 65583145 65583504 -94016279 - ORR1D1 LTR MaLR -4 370 2 1 1085 340 269 217 16 chr3 65583504 65583670 -94016113 + Tigger7 DNA MER2_type 124 328 -2163 1 1085 320 192 54 14 chr3 65583845 65583919 -94015864 + ORR1D1 LTR MaLR 1 77 -297 1 1085 1681 172 144 0 chr3 65584240 65584588 -94015195 - MTD LTR MaLR -4 415 18 1 1085 189 0 0 0 chr3 65584589 65584610 -94015173 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 1 1085 303 28 0 0 chr3 65584625 65584661 -94015122 + (CAAAAA)n Simple_repeat Simple_repeat 3 38 0 1 1085 405 295 143 41 chr3 65584711 65585054 -94014729 - L1MEa LINE L1 -5558 512 135 1 1085 364 212 230 33 chr3 65585529 65585705 -94014078 - MTEb LTR MaLR -1 378 161 1 1085 293 223 403 0 chr3 65585842 65585981 -94013802 - MTEb-int LTR MaLR -1 1579 1385 1 1085 1358 284 180 20 chr3 65586002 65587064 -94012719 - MTEb-int LTR MaLR -277 1303 1 1 1085 295 291 23 86 chr3 65587080 65587208 -94012575 - MTE-int LTR MaLR -252 1328 1209 1 1085 1188 282 37 62 chr3 65587215 65587570 -94012213 - MTEb LTR MaLR -33 346 1 1 1085 446 248 16 49 chr3 65588792 65588915 -94010868 - RSINE1 SINE B4 -1 164 46 1 1085 366 115 0 0 chr3 65588994 65589055 -94010728 + (CA)n Simple_repeat Simple_repeat 2 62 0 1 1085 555 189 163 8 chr3 65590135 65590258 -94009525 + B1F1 SINE Alu 1 142 -7 1 1085 238 310 142 0 chr3 65590302 65590415 -94009368 + MIRb SINE MIR 35 163 -105 1 1085 828 39 0 0 chr3 65592335 65592439 -94007344 + (GA)n Simple_repeat Simple_repeat 1 104 0 1 1085 290 286 9 18 chr3 65592524 65592638 -94007145 + GA-rich Low_complexity Low_complexity 1 113 0 1 1085 243 256 21 43 chr3 65593002 65593096 -94006687 - MLT1D LTR MaLR -13 492 401 1 1085 720 272 87 48 chr3 65593096 65593639 -94006144 + L1ME1 LINE L1 5144 5946 -233 1 1085 193 271 135 54 chr3 65593994 65594068 -94005715 - L2 LINE L2 -1011 2408 2329 1 1085 276 53 0 0 chr3 65594123 65594161 -94005622 + (CA)n Simple_repeat Simple_repeat 1 38 0 1 1085 271 261 29 0 chr3 65594817 65594886 -94004897 + ID SINE ID 1 71 -153 1 1085 251 268 47 8 chr3 65595224 65595352 -94004431 - MER33 DNA MER1_type -13 311 179 1 1085 24 32 0 0 chr3 65595616 65595647 -94004136 + AT_rich Low_complexity Low_complexity 1 31 0 1 1085 274 305 107 23 chr3 65596493 65596802 -94002981 - L1MEe LINE L1 -4074 780 446 1 1085 356 281 231 0 chr3 65596824 65596998 -94002785 - MER45C DNA Tip100 -4 949 736 1 1085 343 352 78 63 chr3 65597020 65597150 -94002633 - MER45C DNA Tip100 -669 284 156 1 1085 1896 141 119 30 chr3 65597150 65597487 -94002296 - ORR1B1 LTR MaLR 0 367 1 1 1085 7987 159 59 14 chr3 65597487 65598931 -94000852 - ORR1B1-int LTR MaLR 0 1509 2 1 1085 2133 148 119 3 chr3 65598931 65599283 -94000500 - ORR1B1 LTR MaLR 0 394 1 1 1085 343 352 78 63 chr3 65599283 65599356 -94000427 - MER45C DNA Tip100 -798 155 78 1 1085 1930 231 133 38 chr3 65599433 65599523 -94000260 - Lx9 LINE L1 -16 7628 7514 1 1085 1203 77 0 0 chr3 65599523 65599691 -94000092 + (TG)n Simple_repeat Simple_repeat 2 169 0 1 1085 1930 231 133 38 chr3 65599691 65600267 -93999516 - Lx9 LINE L1 -131 7513 6899 1 1085 1414 293 71 53 chr3 65600305 65600991 -93998792 + Lx9 LINE L1 6128 6905 -739 1 1085 2518 251 121 62 chr3 65600977 65602932 -93996851 - L1MA6 LINE L1 -114 6186 4237 1 1085 288 0 0 0 chr3 65602932 65602964 -93996819 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 1 1085 2246 258 87 63 chr3 65602964 65603710 -93996073 - L1MA6 LINE L1 -1904 4236 3387 1 1085 236 0 88 0 chr3 65603746 65603780 -93996003 + (TTTTG)n Simple_repeat Simple_repeat 4 40 0 1 1085 639 135 105 26 chr3 65603780 65603894 -93995889 - B1_Mur2 SINE Alu -17 132 10 1 1085 348 262 89 67 chr3 65603894 65603915 -93995868 - ID_B1 SINE B4 -17 207 70 1 1085 336 222 14 14 chr3 65604141 65604214 -93995569 + MTC LTR MaLR 1 73 -348 2 1085 259 274 0 0 chr3 65604240 65604291 -93995492 + MTC LTR MaLR 70 120 -299 2 1085 705 144 148 20 chr3 65604291 65604440 -93995343 - RMER1C Other Other -2 1340 1173 2 1085 352 245 194 0 chr3 65604436 65604534 -93995249 - RMER1C Other Other -625 717 601 2 1085 886 286 9 5 chr3 65605042 65605260 -93994523 + MTC LTR MaLR 189 407 -14 2 1085 880 254 93 18 chr3 65605276 65605661 -93994122 - L1MA6 LINE L1 -2972 3171 2758 1 1085 402 21 0 0 chr3 65605683 65605730 -93994053 + (TG)n Simple_repeat Simple_repeat 1 47 0 2 1085 670 272 97 70 chr3 65605763 65606020 -93993763 - B4 SINE B4 -28 264 1 2 1085 216 270 165 29 chr3 65607514 65607617 -93992166 + PB1D7 SINE Alu 3 119 -1 2 1085 610 239 22 7 chr3 65609219 65609358 -93990425 + B1_Mur1 SINE Alu 2 142 -7 2 1085 38 39 0 0 chr3 65609578 65609630 -93990153 + AT_rich Low_complexity Low_complexity 1 52 0 2 1085 271 295 17 51 chr3 65609921 65610039 -93989744 + L1MEc LINE L1 34 147 -6253 2 1085 447 292 115 96 chr3 65610237 65610673 -93989110 + L1MEc LINE L1 443 886 -5514 2 1085 836 229 29 0 chr3 65610715 65610885 -93988898 + B3 SINE B2 42 216 0 2 1085 254 234 132 40 chr3 65611167 65611341 -93988442 + L1MEc LINE L1 1273 1462 -4938 2 1085 985 126 11 0 chr3 65611360 65611535 -93988248 + (TTTC)n Simple_repeat Simple_repeat 4 180 0 2 1085 588 267 54 6 chr3 65611540 65611717 -93988066 + B3A SINE B2 1 186 -30 2 1085 629 36 24 0 chr3 65611726 65611809 -93987974 + (TTTC)n Simple_repeat Simple_repeat 1 85 0 2 1085 2985 230 115 9 chr3 65611851 65612610 -93987173 - Lx6 LINE L1 0 7460 6622 2 1085 1602 195 35 40 chr3 65612612 65612986 -93986797 + ORR1C2 LTR MaLR 1 372 -12 2 1085 6887 172 61 18 chr3 65612999 65614948 -93984835 - Lx6 LINE L1 -847 6613 4594 2 1085 262 284 0 0 chr3 65614963 65615030 -93984753 + ID2 SINE ID 3 69 -14 2 1085 237 273 52 0 chr3 65615030 65615107 -93984676 + L1MEc LINE L1 2541 2621 -3698 2 1085 403 289 214 11 chr3 65615114 65615296 -93984487 + B4A SINE B4 56 274 -18 2 1085 215 256 0 35 chr3 65615313 65615398 -93984385 + (CATATA)n Simple_repeat Simple_repeat 6 87 0 2 1085 23 0 0 0 chr3 65615465 65615488 -93984295 + AT_rich Low_complexity Low_complexity 1 23 0 2 1085 21 0 0 0 chr3 65615538 65615559 -93984224 + AT_rich Low_complexity Low_complexity 1 21 0 2 1085 508 230 144 36 chr3 65615568 65615762 -93984021 + L1MEc LINE L1 2769 2983 -3336 2 1085 180 0 0 0 chr3 65615777 65615797 -93983986 + (CAAAA)n Simple_repeat Simple_repeat 3 22 0 2 1085 246 172 30 45 chr3 65617475 65617542 -93982241 + GA-rich Low_complexity Low_complexity 1 66 0 2 1085 24 0 0 0 chr3 65617611 65617635 -93982148 + AT_rich Low_complexity Low_complexity 1 24 0 2 1085 225 300 17 0 chr3 65617928 65617988 -93981795 + MER91B DNA Tip100 127 187 -3 2 1085 198 0 0 0 chr3 65618126 65618148 -93981635 + (T)n Simple_repeat Simple_repeat 1 22 0 2 1085 237 322 98 8 chr3 65618839 65618961 -93980822 + L3 LINE CR1 4217 4349 -140 2 1085 180 294 20 0 chr3 65619249 65619300 -93980483 + L3 LINE CR1 4427 4478 -11 2 1085 203 32 65 0 chr3 65619466 65619497 -93980286 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 2 1085 3303 30 8 8 chr3 65620495 65620891 -93978892 - MTA_Mm LTR MaLR 0 396 1 2 1085 211 0 28 56 chr3 65620920 65620956 -93978827 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 2 1085 1205 61 0 13 chr3 65620968 65621118 -93978665 - B1_Mus1 SINE Alu 0 148 1 2 1085 306 226 19 0 chr3 65621203 65621292 -93978491 - B1F1 SINE Alu -22 95 2 2 1085 398 347 32 0 chr3 65621436 65621560 -93978223 + RSINE1 SINE B4 16 143 -22 2 1085 360 0 0 0 chr3 65621572 65621612 -93978171 + (CA)n Simple_repeat Simple_repeat 1 40 0 2 1085 21 0 0 0 chr3 65621628 65621649 -93978134 + AT_rich Low_complexity Low_complexity 1 21 0 2 1085 337 300 33 16 chr3 65621671 65621793 -93977990 + B3 SINE B2 1 124 -92 2 1085 410 279 0 44 chr3 65621930 65622065 -93977718 + MER45C DNA Tip100 82 210 -743 2 1085 300 137 0 0 chr3 65624060 65624111 -93975672 + (CAGG)n Simple_repeat Simple_repeat 4 54 0 2 1085 1499 246 110 33 chr3 65624210 65624720 -93975063 - Lx8 LINE L1 -2 7471 6923 2 1085 27 0 0 0 chr3 65625479 65625506 -93974277 + AT_rich Low_complexity Low_complexity 1 27 0 2 1085 1107 69 0 20 chr3 65625506 65625654 -93974129 - B1_Mus1 SINE Alu -2 146 2 2 1085 233 29 29 0 chr3 65626002 65626036 -93973747 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 2 1085 612 296 59 48 chr3 65626454 65626724 -93973059 - B4A SINE B4 -19 273 1 2 1085 836 286 110 75 chr3 65626737 65627198 -93972585 - MLT1F2 LTR MaLR -82 478 11 2 1085 376 245 46 28 chr3 65627227 65627336 -93972447 - ORR1D1 LTR MaLR -12 358 248 2 1085 303 276 83 74 chr3 65627366 65627703 -93972080 - RLTR15 LTR ERVK -19 340 1 2 1085 849 172 40 110 chr3 65627703 65627931 -93971852 - ORR1D1 LTR MaLR -133 241 30 2 1085 677 250 16 42 chr3 65628094 65628286 -93971497 + B3 SINE B2 5 191 -25 2 1085 204 67 0 0 chr3 65629939 65629969 -93969814 + (CA)n Simple_repeat Simple_repeat 2 31 0 2 1085 339 85 0 0 chr3 65632608 65632655 -93967128 + (GA)n Simple_repeat Simple_repeat 1 47 0 2 1085 450 152 3 38 chr3 65632664 65632763 -93967020 + B1_Mus2 SINE Alu 46 141 -8 2 1085 303 28 0 0 chr3 65633658 65633694 -93966089 + (TG)n Simple_repeat Simple_repeat 1 36 0 2 1085 202 212 15 29 chr3 65633800 65633868 -93965915 + (TA)n Simple_repeat Simple_repeat 1 67 0 2 1085 760 261 14 19 chr3 65637443 65637658 -93962125 + B3 SINE B2 2 215 -1 2 1085 290 179 103 35 chr3 65638942 65639029 -93960754 + MER5A1 DNA MER1_type 5 97 -69 2 1085 420 157 47 13 chr3 65639039 65639188 -93960595 + CT-rich Low_complexity Low_complexity 5 158 0 2 1085 588 246 15 0 chr3 65640151 65640285 -93959498 + B1F1 SINE Alu 1 136 -13 2 1085 37 69 0 0 chr3 65641265 65641337 -93958446 + AT_rich Low_complexity Low_complexity 1 72 0 2 1085 225 0 0 0 chr3 65641355 65641380 -93958403 + (TG)n Simple_repeat Simple_repeat 2 26 0 2 1085 386 250 135 16 chr3 65641383 65641509 -93958274 - RSINE1 SINE B4 -24 141 1 2 1085 445 258 62 8 chr3 65641580 65641709 -93958074 + B1F SINE Alu 10 145 -4 2 1085 445 216 68 7 chr3 65641782 65641902 -93957881 - PB1D10 SINE Alu -19 129 7 2 1085 226 272 77 0 chr3 65644396 65644484 -93955299 - MIR SINE MIR -99 169 68 2 1085 2069 253 123 73 chr3 65644880 65645781 -93954002 + Lx8 LINE L1 6217 7162 -311 2 1085 843 188 74 42 chr3 65646051 65646226 -93953557 + B3A SINE B2 4 188 -10 2 1085 685 87 0 17 chr3 65646226 65646343 -93953440 + (TA)n Simple_repeat Simple_repeat 1 115 0 2 1085 843 188 74 42 chr3 65646343 65646356 -93953427 + B3A SINE B2 189 198 0 2 1085 237 354 17 73 chr3 65649000 65649177 -93950606 - Charlie4z DNA MER1_type 0 167 1 2 1085 620 237 131 5 chr3 65650979 65651170 -93948613 + MER20 DNA MER1_type 1 215 -4 2 1085 678 132 0 65 chr3 65651777 65651915 -93947868 + RMER1B Other Other 826 954 -112 2 1085 7523 154 70 5 chr3 65651924 65653886 -93945897 - Lx5 LINE L1 0 7050 4952 2 1085 580 171 0 41 chr3 65653886 65654008 -93945775 - Lx5 LINE L1 -1889 3988 3872 2 1085 10672 114 24 18 chr3 65654006 65654890 -93944893 - Lx5 LINE L1 -2917 2960 2050 2 1085 270 0 0 0 chr3 65654890 65654920 -93944863 + (TG)n Simple_repeat Simple_repeat 2 31 0 2 1085 10672 166 35 35 chr3 65654920 65656456 -93943327 - Lx5 LINE L1 -3828 2049 490 2 1085 907 115 7 0 chr3 65656477 65656616 -93943167 + RMER1B Other Other 926 1065 -1 2 1085 202 262 0 0 chr3 65656616 65656658 -93943125 + GA-rich Low_complexity Low_complexity 2 43 0 2 1085 21 57 0 0 chr3 65656860 65656895 -93942888 + AT_rich Low_complexity Low_complexity 1 35 0 2 1085 518 75 43 0 chr3 65656935 65657028 -93942755 + (TG)n Simple_repeat Simple_repeat 1 97 0 2 1085 252 215 138 0 chr3 65657037 65657102 -93942681 - RSINE1 SINE B4 -18 147 74 2 1085 46 35 0 44 chr3 65657165 65657204 -93942579 + AT_rich Low_complexity Low_complexity 1 39 0 2 1085 1405 76 11 11 chr3 65657204 65657391 -93942392 - B2_Mm2 SINE B2 -8 187 1 2 1085 46 35 0 44 chr3 65657391 65657441 -93942342 + AT_rich Low_complexity Low_complexity 1 47 0 2 1085 342 0 0 0 chr3 65658093 65658131 -93941652 + (TG)n Simple_repeat Simple_repeat 1 38 0 2 1085 366 23 0 0 chr3 65658131 65658173 -93941610 + (GA)n Simple_repeat Simple_repeat 1 43 0 2 1085 306 277 247 45 chr3 65659075 65659298 -93940485 - MER47B DNA MER2_type -150 268 1 2 1085 237 125 25 0 chr3 65660345 65660385 -93939398 + L1_Mur2 LINE L1 3579 3619 -2258 2 1085 513 294 28 133 chr3 65660952 65661349 -93938434 - MLT1B LTR MaLR -35 355 1 2 1085 567 0 0 0 chr3 65661755 65661818 -93937965 + (CA)n Simple_repeat Simple_repeat 2 64 0 2 1085 333 0 0 0 chr3 65661818 65661854 -93937929 + (GA)n Simple_repeat Simple_repeat 2 38 0 2 1085 669 160 40 0 chr3 65663668 65663793 -93935990 + RSINE1 SINE B4 3 132 -33 2 1085 291 361 32 45 chr3 65664179 65664333 -93935450 + ID_B1 SINE B4 40 191 -33 2 1085 342 67 0 0 chr3 65664338 65664383 -93935400 + (TAA)n Simple_repeat Simple_repeat 2 46 0 2 1085 203 170 21 0 chr3 65665670 65665717 -93934066 + GA-rich Low_complexity Low_complexity 2 49 0 2 1086 1465 210 5 133 chr3 65669361 65669491 -93930292 - ORR1D1 LTR MaLR 0 374 248 2 1086 1284 67 0 0 chr3 65669491 65669671 -93930112 + (CAGG)n Simple_repeat Simple_repeat 1 180 0 2 1086 1465 210 5 133 chr3 65669671 65669736 -93930047 - ORR1D1 LTR MaLR -127 247 223 2 1086 627 39 0 0 chr3 65669736 65669814 -93929969 + (CAGG)n Simple_repeat Simple_repeat 4 81 0 2 1086 1465 210 5 133 chr3 65669814 65670046 -93929737 - ORR1D1 LTR MaLR -152 222 1 2 1086 674 179 24 0 chr3 65670085 65670253 -93929530 + GA-rich Low_complexity Low_complexity 2 173 0 2 1086 1437 191 60 89 chr3 65670268 65670618 -93929165 - MTD LTR MaLR -46 373 34 2 1086 210 349 104 75 chr3 65670692 65670971 -93928812 - L2c LINE L2 0 3387 3101 2 1086 430 309 203 9 chr3 65672285 65672497 -93927286 - MLT1F2 LTR MaLR 0 560 308 2 1086 22 0 0 0 chr3 65673265 65673287 -93926496 + AT_rich Low_complexity Low_complexity 1 22 0 2 1086 237 161 81 0 chr3 65674782 65674844 -93924939 + (TAAA)n Simple_repeat Simple_repeat 2 68 0 2 1086 261 0 0 0 chr3 65676572 65676601 -93923182 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 2 1086 909 125 20 34 chr3 65676607 65676756 -93923027 + B1_Mur3 SINE Alu 2 148 -1 2 1086 248 307 8 50 chr3 65677118 65677238 -93922545 - L2 LINE L2 -1306 2113 1999 2 1086 198 0 0 0 chr3 65677927 65677949 -93921834 + (A)n Simple_repeat Simple_repeat 1 22 0 3 1086 248 322 64 32 chr3 65678116 65678241 -93921542 + MamRep38 DNA hAT 92 220 -75 3 1086 2143 125 18 87 chr3 65678323 65678716 -93921067 + ORR1B1 LTR MaLR 29 394 0 3 1086 282 289 20 10 chr3 65678719 65678817 -93920966 + L1_Mur1 LINE L1 1541 1639 -4247 3 1086 1509 315 20 15 chr3 65678836 65679574 -93920209 + L1M2 LINE L1 2278 3019 -3124 3 1086 1068 62 154 12 chr3 65679583 65679745 -93920038 + B2_Mm2 SINE B2 2 186 -9 3 1086 22 0 0 0 chr3 65679921 65679943 -93919840 + AT_rich Low_complexity Low_complexity 1 22 0 3 1086 761 123 0 0 chr3 65679970 65680076 -93919707 + B1_Mur4 SINE Alu 35 140 -10 3 1086 381 264 0 91 chr3 65680076 65680091 -93919692 + ID_B1 SINE B4 115 224 0 3 1086 1264 314 43 23 chr3 65680109 65680685 -93919098 + L1M2 LINE L1 3195 3782 -2361 3 1086 1902 214 108 45 chr3 65680836 65681292 -93918491 + RLTR20B1 LTR ERVK 1 470 -93 3 1086 225 0 0 0 chr3 65681292 65681317 -93918466 + (TG)n Simple_repeat Simple_repeat 2 26 0 3 1086 1902 214 108 45 chr3 65681317 65681389 -93918394 + RLTR20B1 LTR ERVK 471 561 -2 3 1086 445 210 20 10 chr3 65681390 65681491 -93918292 - B4 SINE B4 -188 104 3 3 1086 196 326 112 0 chr3 65681796 65681885 -93917898 - L2b LINE L2 -1 3374 3276 3 1086 211 243 125 28 chr3 65681984 65682056 -93917727 + MIR SINE MIR 19 97 -165 3 1086 376 248 289 7 chr3 65682439 65682581 -93917202 + B3A SINE B2 1 182 -16 3 1086 216 0 0 0 chr3 65682612 65682636 -93917147 + (CA)n Simple_repeat Simple_repeat 2 25 0 3 1086 504 0 0 0 chr3 65682666 65682722 -93917061 + (CA)n Simple_repeat Simple_repeat 2 57 0 3 1086 252 338 65 58 chr3 65683419 65683557 -93916226 + MIRb SINE MIR 4 142 -126 3 1086 370 279 68 7 chr3 65684076 65684224 -93915559 - Lx7 LINE L1 -26 7670 7514 3 1086 4511 200 94 1 chr3 65684266 65685167 -93914616 - Lx7 LINE L1 -312 7384 6400 3 1086 2957 185 66 16 chr3 65685165 65685929 -93913854 - Lx7 LINE L1 -1650 6046 5253 3 1086 452 150 8 45 chr3 65685945 65686078 -93913705 + CT-rich Low_complexity Low_complexity 3 130 0 3 1086 309 191 0 0 chr3 65686083 65686146 -93913637 - Lx7 LINE L1 -637 5243 5181 3 1086 709 204 77 0 chr3 65686146 65686327 -93913456 + ORR1D1 LTR MaLR 180 374 0 3 1086 852 156 13 39 chr3 65686352 65686506 -93913277 + B1_Mur4 SINE Alu 1 150 0 3 1086 2280 163 37 7 chr3 65686920 65687329 -93912454 + MTC LTR MaLR 1 421 0 3 1086 1153 49 0 14 chr3 65687511 65687655 -93912128 + B1_Mus1 SINE Alu 2 143 -5 3 1086 483 18 0 0 chr3 65687656 65687712 -93912071 + (GA)n Simple_repeat Simple_repeat 2 57 0 3 1086 247 271 121 60 chr3 65687768 65687805 -93911978 - B2_Mm2 SINE B2 0 195 164 3 1086 321 26 0 0 chr3 65687805 65687843 -93911940 + (TCTG)n Simple_repeat Simple_repeat 1 38 0 3 1086 503 253 83 3 chr3 65687843 65687973 -93911810 - B3A SINE B2 -32 163 9 3 1086 240 362 13 0 chr3 65688050 65688138 -93911645 - MIRb SINE MIR -132 136 33 3 1086 1251 152 14 14 chr3 65689114 65689334 -93910449 - URR1A DNA MER1_type -4 222 3 3 1086 310 348 84 55 chr3 65689917 65690227 -93909556 - MER46C DNA MER2_type -1 337 19 3 1086 621 237 177 74 chr3 65690354 65690637 -93909146 + MT2_Mm LTR ERVL 2 313 -180 3 1086 24 24 0 24 chr3 65690645 65690671 -93909112 + AT_rich Low_complexity Low_complexity 1 26 0 3 1086 1253 41 0 0 chr3 65690671 65690818 -93908965 + B1_Mus2 SINE Alu 1 147 0 3 1086 24 24 0 24 chr3 65690818 65690833 -93908950 + AT_rich Low_complexity Low_complexity 1 15 0 3 1086 400 85 421 11 chr3 65690833 65690928 -93908855 - B2_Mm2 SINE B2 -14 181 48 3 1086 1286 102 11 0 chr3 65690961 65691138 -93908645 - B2_Mm1t SINE B2 -14 179 1 3 1086 748 225 179 44 chr3 65691138 65691370 -93908413 + MT2B2 LTR ERVL 176 584 0 3 1086 1130 286 92 48 chr3 65691491 65691688 -93908095 + MLT1C LTR MaLR 1 202 -265 3 1086 578 164 180 0 chr3 65691688 65691810 -93907973 + B1_Mus1 SINE Alu 5 148 0 3 1086 1130 268 94 28 chr3 65691810 65692061 -93907722 + MLT1C LTR MaLR 203 453 -14 3 1086 332 263 24 0 chr3 65692135 65692219 -93907564 - ID4 SINE ID -63 89 6 3 1086 291 302 9 127 chr3 65693391 65693501 -93906282 + L2c LINE L2 3290 3386 -1 3 1086 293 284 54 0 chr3 65693771 65693845 -93905938 + ID2 SINE ID 5 82 -1 3 1086 3701 70 10 2 chr3 65694192 65694677 -93905106 - L1_Mus2 LINE L1 -1 6565 6077 3 1086 465 277 32 48 chr3 65695745 65695870 -93903913 + RSINE1 SINE B4 43 165 0 3 1086 377 218 39 0 chr3 65695993 65696071 -93903712 - MTEa LTR MaLR 0 379 299 3 1086 4666 189 30 34 chr3 65696073 65696264 -93903519 + Lx6 LINE L1 6552 6739 -721 3 1086 387 0 0 0 chr3 65696264 65696307 -93903476 + (TAAA)n Simple_repeat Simple_repeat 3 45 0 3 1086 4666 189 30 34 chr3 65696307 65696468 -93903315 + Lx6 LINE L1 6740 6904 -556 3 1086 2498 142 5 0 chr3 65696468 65696842 -93902941 + ORR1C1 LTR MaLR 1 376 -2 3 1086 4666 189 30 34 chr3 65696842 65697401 -93902382 + Lx6 LINE L1 6905 7459 -1 3 1086 1005 287 109 3 chr3 65697406 65697700 -93902083 - MTEa LTR MaLR -54 325 1 3 1086 225 0 0 0 chr3 65697871 65697896 -93901887 + (CA)n Simple_repeat Simple_repeat 2 26 0 3 1086 1125 192 24 5 chr3 65698243 65698452 -93901331 + B3 SINE B2 1 213 -3 3 1086 852 186 0 0 chr3 65698676 65698843 -93900940 + GA-rich Low_complexity Low_complexity 3 169 0 3 1086 666 0 0 0 chr3 65699440 65699514 -93900269 + (GAAA)n Simple_repeat Simple_repeat 2 75 0 3 1086 215 231 0 84 chr3 65700312 65700383 -93899400 - L2a LINE L2 -1 3425 3361 3 1086 270 206 0 0 chr3 65700465 65700533 -93899250 + (TG)n Simple_repeat Simple_repeat 1 68 0 3 1086 288 323 65 36 chr3 65700828 65700966 -93898817 + MIRc SINE MIR 12 153 -115 3 1086 188 286 0 0 chr3 65701036 65701078 -93898705 + MIRb SINE MIR 218 259 -9 3 1086 387 269 37 110 chr3 65702021 65702038 -93897745 + B4A SINE B4 71 75 -217 3 1086 892 200 0 14 chr3 65702038 65702185 -93897598 + B1_Mur4 SINE Alu 1 145 -5 3 1086 289 271 72 10 chr3 65702988 65703085 -93896698 + L1MC LINE L1 5698 5800 -2082 3 1086 501 96 32 0 chr3 65703201 65703295 -93896488 + (TG)n Simple_repeat Simple_repeat 2 98 0 3 1086 299 308 37 0 chr3 65703639 65703746 -93896037 - MLT1H2 LTR MaLR -303 186 76 3 1086 24 0 0 0 chr3 65703783 65703807 -93895976 + AT_rich Low_complexity Low_complexity 1 24 0 3 1086 330 285 91 78 chr3 65703875 65704107 -93895676 + L1MC5 LINE L1 7654 7888 -73 3 1086 284 0 0 27 chr3 65705036 65705073 -93894710 + (TTA)n Simple_repeat Simple_repeat 2 37 0 3 1086 442 309 58 0 chr3 65705101 65705240 -93894543 - RSINE1 SINE B4 -15 150 4 3 1086 5202 162 255 32 chr3 65705431 65705560 -93894223 + Lx5 LINE L1 4216 4337 -1540 3 1086 1199 54 0 7 chr3 65705560 65705709 -93894074 + B1_Mus1 SINE Alu 1 148 0 3 1086 5202 181 163 24 chr3 65705709 65707948 -93891835 + Lx5 LINE L1 4338 7050 0 3 1086 225 128 0 0 chr3 65707992 65708039 -93891744 + (T)n Simple_repeat Simple_repeat 1 47 0 3 1086 800 151 7 0 chr3 65708975 65709121 -93890662 + CT-rich Low_complexity Low_complexity 5 151 0 3 1086 434 274 66 15 chr3 65709162 65709299 -93890484 - MIR3 SINE MIR -4 204 61 3 1086 218 156 0 0 chr3 65709355 65709400 -93890383 + BC1_Mm scRNA scRNA 53 97 -55 3 1086 432 0 0 0 chr3 65709704 65709752 -93890031 + (CA)n Simple_repeat Simple_repeat 2 49 0 3 1086 504 156 0 0 chr3 65710830 65710920 -93888863 + GA-rich Low_complexity Low_complexity 4 93 0 3 1086 187 366 115 9 chr3 65711516 65711629 -93888154 - MIRb SINE MIR -138 130 6 3 1086 692 289 0 39 chr3 65711716 65711896 -93887887 + ID_B1 SINE B4 50 222 -2 3 1086 190 318 0 0 chr3 65711909 65711953 -93887830 - MER5B DNA MER1_type -131 47 4 3 1086 656 265 25 25 chr3 65712209 65712368 -93887415 + B3 SINE B2 1 159 -57 3 1086 211 102 40 20 chr3 65712378 65712428 -93887355 + T-rich Low_complexity Low_complexity 2 52 0 3 1086 226 342 60 72 chr3 65712560 65712571 -93887212 + MT2B LTR ERVL 153 182 -419 3 1086 477 295 0 0 chr3 65712571 65712683 -93887100 + PB1D10 SINE Alu 1 112 -5 3 1086 226 342 60 72 chr3 65712683 65712727 -93887056 + MT2B LTR ERVL 183 317 -284 3 1086 854 306 39 44 chr3 65712778 65712994 -93886789 + RMER1B Other Other 1 210 -856 3 1086 3254 48 10 5 chr3 65712994 65713388 -93886395 - MTA_Mm LTR MaLR 0 396 1 3 1086 3761 216 39 114 chr3 65713388 65714549 -93885234 + RMER1B Other Other 164 1057 -9 3 1086 22 35 0 0 chr3 65714549 65714578 -93885205 + AT_rich Low_complexity Low_complexity 1 29 0 3 1086 672 226 24 0 chr3 65714805 65714929 -93884854 + B1_Mus1 SINE Alu 15 141 -7 3 1086 202 304 43 0 chr3 65714930 65714999 -93884784 + GA-rich Low_complexity Low_complexity 1 72 0 3 1086 946 122 0 0 chr3 65715180 65715311 -93884472 - B1_Mur3 SINE Alu -10 139 9 3 1086 337 179 0 0 chr3 65715440 65715496 -93884287 - ORR1B2 LTR MaLR 0 367 312 3 1086 2300 157 121 35 chr3 65715496 65715959 -93883824 - RMER1B Other Other 0 1066 564 3 1086 1700 184 16 43 chr3 65715960 65716329 -93883454 + RMER17B LTR ERVK 600 958 0 3 1086 325 177 16 31 chr3 65716330 65716394 -93883389 + RMER17A-int LTR ERVK 2 64 -1664 3 1086 1145 54 14 0 chr3 65716394 65716541 -93883242 - RMER17B LTR ERVK -809 149 1 3 1086 300 294 35 44 chr3 65716733 65716847 -93882936 + RLTR26 LTR ERVK 305 417 -225 3 1086 788 299 22 4 chr3 65717282 65717506 -93882277 + RLTR11A LTR ERVK 221 448 -80 3 1086 1175 110 0 0 chr3 65717506 65717670 -93882113 + B2_Mm2 SINE B2 2 165 -30 3 1086 337 105 310 26 chr3 65717753 65717869 -93881914 + B2_Mm2 SINE B2 47 195 0 3 1086 336 265 0 24 chr3 65717853 65717938 -93881845 + RLTR11A LTR ERVK 429 511 -17 3 1086 1775 239 54 12 chr3 65717996 65718204 -93881579 - BGLII_B LTR ERVK -10 431 211 3 1086 774 0 0 0 chr3 65718204 65718290 -93881493 + (TTC)n Simple_repeat Simple_repeat 2 87 0 3 1086 1775 239 54 12 chr3 65718290 65718491 -93881292 - BGLII_B LTR ERVK -231 210 5 3 1086 432 292 60 87 chr3 65719249 65719549 -93880234 + B4A SINE B4 1 292 0 3 1086 896 195 66 52 chr3 65719578 65719613 -93880170 - B3 SINE B2 0 216 182 3 1086 910 152 14 20 chr3 65719613 65719761 -93880022 - B1_Mus2 SINE Alu 0 147 1 3 1086 896 195 66 52 chr3 65719761 65719883 -93879900 - B3 SINE B2 -35 181 66 3 1086 258 56 0 0 chr3 65719883 65719919 -93879864 + (CA)n Simple_repeat Simple_repeat 2 37 0 3 1086 896 195 66 52 chr3 65719919 65719971 -93879812 - B3 SINE B2 -151 65 4 3 1086 3394 162 15 36 chr3 65720474 65721087 -93878696 - RMER20B LTR ERVK -24 603 4 3 1086 4949 228 51 26 chr3 65721092 65722211 -93877572 - MERVK26-int LTR ERVK -2 6917 5771 3 1086 1660 140 92 0 chr3 65722301 65722594 -93877189 + IAPEY3_LTR LTR ERVK 1 320 -12 4 1086 440 234 121 36 chr3 65722598 65722776 -93877007 - RLTR20B2 LTR ERVK -348 212 2 4 1086 768 209 52 0 chr3 65722776 65722948 -93876835 - MERVK26-int LTR ERVK -1903 5016 4836 3 1086 265 103 0 0 chr3 65722948 65722987 -93876796 - U2 snRNA snRNA -149 39 1 4 1086 299 138 0 94 chr3 65722987 65723051 -93876732 - MERVK26-int LTR ERVK -2073 4846 4789 3 1086 3430 38 2 0 chr3 65723644 65724039 -93875744 - MTA_Mm LTR MaLR 0 396 1 4 1086 183 80 0 0 chr3 65724055 65724080 -93875703 + (TGG)n Simple_repeat Simple_repeat 1 25 0 4 1086 22 0 0 0 chr3 65724088 65724110 -93875673 + AT_rich Low_complexity Low_complexity 1 22 0 4 1086 834 245 39 0 chr3 65724110 65724318 -93875465 + B3 SINE B2 1 216 0 4 1086 272 242 20 102 chr3 65724498 65724613 -93875170 + B3A SINE B2 1 174 -24 4 1086 435 19 0 0 chr3 65724613 65724665 -93875118 + (TG)n Simple_repeat Simple_repeat 2 53 0 4 1086 272 277 46 73 chr3 65724665 65724685 -93875098 + B3A SINE B2 175 197 -1 4 1086 1633 189 48 22 chr3 65724932 65725289 -93874494 + ORR1D1 LTR MaLR 2 367 -7 4 1086 217 0 61 0 chr3 65725322 65725355 -93874428 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 4 1086 207 0 0 0 chr3 65725364 65725387 -93874396 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 4 1086 1160 63 0 0 chr3 65725393 65725536 -93874247 - B1_Mus1 SINE Alu -5 143 1 4 1086 1005 271 84 3 chr3 65725664 65725997 -93873786 - MTEb LTR MaLR -13 366 7 4 1086 188 203 83 42 chr3 65726946 65727018 -93872765 - MIRc SINE MIR -100 168 94 4 1086 503 323 164 17 chr3 65727036 65727389 -93872394 - MLT1A1 LTR MaLR -3 405 1 4 1086 544 226 89 0 chr3 65727458 65727582 -93872201 + B1F SINE Alu 2 136 -13 4 1086 552 30 0 0 chr3 65727583 65727649 -93872134 + (GGAA)n Simple_repeat Simple_repeat 2 67 0 4 1086 486 169 0 12 chr3 65727666 65727750 -93872033 + B1_Mus1 SINE Alu 10 92 -56 4 1086 375 42 72 21 chr3 65727758 65727855 -93871928 + (TA)n Simple_repeat Simple_repeat 1 102 0 4 1086 26 64 0 0 chr3 65727855 65727902 -93871881 + AT_rich Low_complexity Low_complexity 1 47 0 4 1086 254 322 63 6 chr3 65727930 65728029 -93871754 + MIR SINE MIR 17 118 -150 4 1086 279 311 56 0 chr3 65728257 65728347 -93871436 - MER5B DNA MER1_type -26 152 58 4 1086 244 294 61 44 chr3 65728362 65728476 -93871307 + MER5A DNA MER1_type 2 117 -72 4 1086 564 111 6 25 chr3 65728740 65728863 -93870920 + B1_Mus2 SINE Alu 2 117 -32 4 1086 270 241 24 48 chr3 65729448 65729531 -93870252 - B1F SINE Alu -8 141 61 4 1086 241 131 14 28 chr3 65729621 65729692 -93870091 + T-rich Low_complexity Low_complexity 3 72 0 4 1086 710 265 26 118 chr3 65730426 65730611 -93869172 + MTEa LTR MaLR 99 261 -118 4 1086 646 172 70 8 chr3 65730611 65730740 -93869043 - B1_Mur1 SINE Alu -8 141 5 4 1086 710 265 26 118 chr3 65730740 65730858 -93868925 + MTEa LTR MaLR 262 374 -5 4 1086 1061 174 30 5 chr3 65732234 65732431 -93867352 + B3 SINE B2 1 202 -14 4 1086 25 0 0 0 chr3 65732431 65732456 -93867327 + AT_rich Low_complexity Low_complexity 1 25 0 4 1086 180 0 0 0 chr3 65732759 65732779 -93867004 + (CA)n Simple_repeat Simple_repeat 1 20 0 4 1086 201 74 0 0 chr3 65734249 65734276 -93865507 + (CAA)n Simple_repeat Simple_repeat 2 28 0 4 1086 209 140 18 0 chr3 65734278 65734335 -93865448 + (CAAA)n Simple_repeat Simple_repeat 2 59 0 4 1086 326 237 0 26 chr3 65734469 65734547 -93865236 + C-rich Low_complexity Low_complexity 1 76 0 4 1086 197 65 32 0 chr3 65734566 65734597 -93865186 + (TGG)n Simple_repeat Simple_repeat 1 32 0 4 1086 273 315 120 0 chr3 65734614 65734706 -93865077 - PB1D10 SINE Alu -12 105 3 4 1086 2549 143 51 18 chr3 65734998 65735491 -93864292 - RLTR11A2 LTR ERVK 0 527 19 4 1086 248 293 69 63 chr3 65735763 65735925 -93863858 - MIRb SINE MIR -44 224 63 4 1086 884 191 13 101 chr3 65736262 65736489 -93863294 + B3 SINE B2 2 208 -8 4 1086 264 159 30 60 chr3 65736591 65736658 -93863125 + B1_Mus2 SINE Alu 83 147 0 4 1086 180 145 43 14 chr3 65738304 65738374 -93861409 + (TCTG)n Simple_repeat Simple_repeat 3 74 0 4 1086 550 167 0 32 chr3 65738380 65738550 -93861233 + (TG)n Simple_repeat Simple_repeat 2 166 0 4 1086 387 0 0 0 chr3 65738550 65738593 -93861190 + (TC)n Simple_repeat Simple_repeat 2 44 0 4 1086 550 167 0 32 chr3 65738593 65738608 -93861175 + (TG)n Simple_repeat Simple_repeat 1 15 0 4 1086 337 248 0 0 chr3 65738608 65738709 -93861074 + (TCTG)n Simple_repeat Simple_repeat 4 104 0 4 1086 503 200 0 22 chr3 65738712 65738896 -93860887 + (TG)n Simple_repeat Simple_repeat 1 180 0 4 1086 714 24 0 0 chr3 65739487 65739571 -93860212 + (CA)n Simple_repeat Simple_repeat 1 84 0 4 1086 1483 68 16 0 chr3 65739994 65740184 -93859599 + B2_Mm2 SINE B2 1 193 -2 4 1086 283 286 133 0 chr3 65741257 65741362 -93858421 - MIRb SINE MIR -125 143 25 4 1086 351 276 0 0 chr3 65742029 65742105 -93857678 + ID4_ SINE ID 2 77 -6 4 1086 358 311 94 51 chr3 65743578 65743679 -93856104 + MER34A1 LTR ERV1 1 116 -471 4 1086 560 226 0 55 chr3 65743679 65743824 -93855959 + B1_Mur4 SINE Alu 1 137 -13 4 1086 358 311 94 51 chr3 65743824 65743956 -93855827 + MER34A1 LTR ERV1 117 243 -344 4 1086 247 222 159 0 chr3 65744238 65744301 -93855482 + ID SINE ID 3 75 -149 4 1086 327 174 153 0 chr3 65744707 65744816 -93854967 - B3 SINE B2 0 198 63 4 1086 526 128 235 0 chr3 65744809 65744911 -93854872 - B1_Mus1 SINE Alu -18 130 5 4 1086 226 132 0 0 chr3 65744914 65744952 -93854831 - B2_Mm2 SINE B2 -157 38 1 4 1086 234 228 99 25 chr3 65744952 65744999 -93854784 + MTEb LTR MaLR 319 371 -8 4 1086 732 279 126 44 chr3 65745090 65745431 -93854352 - Lx8 LINE L1 -69 7404 7036 4 1086 373 286 159 29 chr3 65745459 65745736 -93854047 + L1MC4 LINE L1 7266 7578 -464 4 1086 429 20 0 0 chr3 65745779 65745829 -93853954 + (TAGA)n Simple_repeat Simple_repeat 4 53 0 4 1086 186 227 0 0 chr3 65745850 65745894 -93853889 + (CATATA)n Simple_repeat Simple_repeat 2 45 0 4 1086 253 192 152 13 chr3 65745894 65745973 -93853810 + L1MD3 LINE L1 6594 6683 -1312 4 1086 972 130 14 0 chr3 65746017 65746163 -93853620 + B1_Mus1 SINE Alu 1 148 0 4 1086 298 188 0 45 chr3 65746396 65746451 -93853332 + B1_Mur3 SINE Alu 85 139 -10 4 1086 990 91 24 18 chr3 65746451 65746619 -93853164 + (GGAAA)n Simple_repeat Simple_repeat 2 170 0 4 1086 298 188 0 45 chr3 65746619 65746630 -93853153 + B1_Mur3 SINE Alu 140 148 -1 4 1086 212 289 64 26 chr3 65746927 65747005 -93852778 + PB1D10 SINE Alu 1 81 -36 4 1086 963 55 133 0 chr3 65747007 65747135 -93852648 + B1_Mus2 SINE Alu 1 145 -2 4 1086 285 100 0 0 chr3 65747135 65747185 -93852598 + (CCAA)n Simple_repeat Simple_repeat 2 51 0 4 1086 680 97 39 0 chr3 65747236 65747339 -93852444 + B2_Mm2 SINE B2 1 107 -88 4 1086 261 0 0 0 chr3 65747427 65747456 -93852327 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 4 1086 277 205 85 64 chr3 65747558 65747652 -93852131 + B1_Mur1 SINE Alu 44 139 -10 4 1086 553 137 104 64 chr3 65748117 65748242 -93851541 - B2_Mm2 SINE B2 -31 164 35 4 1086 946 204 199 56 chr3 65748242 65748324 -93851459 + Lx6 LINE L1 7064 7134 -326 4 1086 1200 42 157 0 chr3 65748324 65748490 -93851293 - B2_Mm2 SINE B2 -3 192 1 4 1086 946 204 199 56 chr3 65748490 65748729 -93851054 + Lx6 LINE L1 7135 7431 -29 4 1086 320 311 73 15 chr3 65748770 65748907 -93850876 + Lx8 LINE L1 7206 7350 -123 4 1086 430 209 23 0 chr3 65748924 65749010 -93850773 + B3 SINE B2 1 88 -128 4 1086 27 0 0 0 chr3 65749051 65749078 -93850705 + AT_rich Low_complexity Low_complexity 1 27 0 4 1086 1624 69 48 16 chr3 65749282 65749531 -93850252 + L1_Mus3 LINE L1 6379 6635 -3 4 1086 242 273 182 0 chr3 65751328 65751394 -93848389 + RSINE1 SINE B4 3 80 -85 4 1086 304 216 32 105 chr3 65756638 65756762 -93843021 + ID_B1 SINE B4 82 196 -28 4 1086 297 103 69 0 chr3 65760960 65761018 -93838765 - B1_Mus2 SINE Alu 0 147 86 4 1086 279 245 21 11 chr3 65761572 65761667 -93838116 + C-rich Low_complexity Low_complexity 4 99 0 4 1086 249 128 0 0 chr3 65761975 65762022 -93837761 + (CGG)n Simple_repeat Simple_repeat 2 48 0 4 1086 710 142 25 0 chr3 65762723 65762843 -93836940 + RMER5 LTR ERV1 401 523 -11 4 1086 1113 62 14 14 chr3 65762843 65762990 -93836793 - B1_Mm SINE Alu 0 147 1 4 1086 230 187 73 167 chr3 65763301 65763397 -93836386 + PB1D9 SINE Alu 34 120 0 4 1086 234 154 0 0 chr3 65763422 65763461 -93836322 + B1_Mus2 SINE Alu 1 39 -108 4 1086 943 107 160 6 chr3 65763916 65764085 -93835698 - RMER15 LTR ERVL -8 567 373 4 1086 1693 148 19 91 chr3 65764091 65764455 -93835328 - RLTR18B LTR ERVK -130 382 45 4 1086 838 140 7 14 chr3 65764465 65764603 -93835180 + B1_Mus1 SINE Alu 12 148 0 4 1086 302 138 17 17 chr3 65764601 65764660 -93835123 - RLTR18B LTR ERVK -453 59 1 4 1086 425 276 0 10 chr3 65765111 65765210 -93834573 - B1F SINE Alu -50 99 2 4 1086 1116 60 0 0 chr3 65765590 65765739 -93834044 + B2_Mm2 SINE B2 1 149 -46 4 1086 213 200 0 0 chr3 65767301 65767341 -93832442 + ID4_ SINE ID 3 42 -41 4 1086 200 206 0 0 chr3 65767465 65767499 -93832284 + (CATA)n Simple_repeat Simple_repeat 2 35 0 4 1086 1681 194 43 27 chr3 65767611 65767690 -93832093 - MTC LTR MaLR 0 421 341 4 1086 3226 53 8 13 chr3 65767690 65768088 -93831695 - MTA_Mm LTR MaLR 0 396 1 4 1086 1681 194 43 27 chr3 65768088 65768383 -93831400 - MTC LTR MaLR -81 340 42 4 1086 585 52 0 0 chr3 65768386 65768463 -93831320 + (TG)n Simple_repeat Simple_repeat 2 78 0 4 1086 552 201 37 75 chr3 65768465 65768589 -93831194 - B3A SINE B2 -41 157 39 4 1086 1529 133 294 25 chr3 65768589 65768950 -93830833 - RMER6B LTR ERVK -3 458 1 4 1086 552 201 37 75 chr3 65768950 65768986 -93830797 - B3A SINE B2 -160 38 3 4 1086 305 277 75 0 chr3 65769115 65769209 -93830574 + PB1D10 SINE Alu 13 113 -4 5 1086 460 277 13 60 chr3 65769215 65769365 -93830418 + ID_B1 SINE B4 82 224 0 5 1086 230 27 0 75 chr3 65769421 65769461 -93830322 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 5 1086 709 197 22 29 chr3 65769465 65769601 -93830182 - B1_Mur3 SINE Alu -13 136 2 5 1086 1183 115 63 0 chr3 65769714 65769888 -93829895 - B2_Mm2 SINE B2 -9 186 2 5 1086 1140 153 30 0 chr3 65770341 65770544 -93829239 + MTC LTR MaLR 2 210 -211 5 1086 1852 142 36 12 chr3 65770557 65770893 -93828890 + ORR1B1 LTR MaLR 51 394 0 5 1086 1026 150 113 5 chr3 65770893 65771087 -93828696 + MTC LTR MaLR 207 421 0 5 1086 297 313 8 57 chr3 65771119 65771241 -93828542 - PB1D10 SINE Alu -1 116 1 5 1086 331 233 207 109 chr3 65771331 65771524 -93828259 + B3 SINE B2 1 212 -4 5 1086 1300 53 45 28 chr3 65771528 65771704 -93828079 + B2_Mm2 SINE B2 1 179 -16 5 1086 306 194 226 71 chr3 65772074 65772159 -93827624 - RMER5 LTR ERV1 0 534 456 5 1086 2129 170 47 5 chr3 65772159 65772561 -93827222 + MTC LTR MaLR 3 421 0 5 1086 306 194 226 71 chr3 65772561 65772630 -93827153 - RMER5 LTR ERV1 -79 455 356 5 1086 295 287 69 44 chr3 65773132 65773336 -93826447 - RMER5 LTR ERV1 -192 342 134 5 1086 2382 148 17 2 chr3 65773330 65773735 -93826048 - MTC LTR MaLR -8 413 3 5 1086 250 238 37 24 chr3 65773738 65773820 -93825963 + RMER5 LTR ERV1 452 534 0 5 1086 408 274 20 0 chr3 65773886 65773988 -93825795 - RLTR19A LTR ERVK -62 437 334 5 1086 210 191 0 0 chr3 65773992 65774034 -93825749 + (CAG)n Simple_repeat Simple_repeat 2 43 0 5 1086 930 211 0 174 chr3 65774034 65774160 -93825623 - RLTR19A LTR ERVK -165 331 223 5 1086 1111 88 0 20 chr3 65774160 65774310 -93825473 - B1_Mus1 SINE Alu 0 148 2 5 1086 930 197 0 131 chr3 65774310 65774523 -93825260 - RLTR19A LTR ERVK -274 222 4 5 1086 281 270 27 13 chr3 65774535 65774610 -93825173 - RSINE1 SINE B4 -86 79 4 5 1086 762 146 57 28 chr3 65774674 65774815 -93824968 + B1_Mus1 SINE Alu 4 148 0 5 1086 249 33 0 0 chr3 65774877 65774907 -93824876 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 5 1086 1110 107 0 0 chr3 65774907 65775066 -93824717 - B2_Mm2 SINE B2 -35 160 2 5 1086 1179 75 0 0 chr3 65775077 65775224 -93824559 - B1_Mus2 SINE Alu 0 147 1 5 1086 2324 176 32 30 chr3 65775397 65775890 -93823893 + RLTR19A LTR ERVK 1 494 -2 5 1086 316 264 49 16 chr3 65775944 65776067 -93823716 - L1MC4 LINE L1 -518 7524 7398 5 1086 590 143 57 0 chr3 65776071 65776176 -93823607 - B1_Mus1 SINE Alu -37 111 1 5 1086 231 239 21 74 chr3 65776308 65776403 -93823380 - RSINE1 SINE B4 0 165 76 5 1086 719 215 149 17 chr3 65776407 65776582 -93823201 + RLTR42 LTR ERVK 1 198 -41 5 1086 1109 140 123 15 chr3 65776624 65776827 -93822956 + URR1B DNA MER1_type 1 225 0 5 1086 1471 138 87 75 chr3 65776936 65777281 -93822502 + RLTR42-int LTR ERVK 3270 3618 -1904 5 1086 626 187 64 14 chr3 65777878 65778019 -93821764 + B1_Mus1 SINE Alu 1 148 0 5 1086 1710 215 128 26 chr3 65780091 65780544 -93819239 - Lx6 LINE L1 -15 7445 6947 5 1086 240 35 0 0 chr3 65780579 65780608 -93819175 + (TTG)n Simple_repeat Simple_repeat 2 30 0 5 1086 524 151 12 0 chr3 65780991 65781077 -93818706 + RSINE1 SINE B4 49 135 -30 5 1086 4661 157 55 7 chr3 65781942 65782692 -93817091 + Lx9 LINE L1 6731 7523 -121 5 1086 444 82 0 0 chr3 65782692 65782753 -93817030 + (TG)n Simple_repeat Simple_repeat 2 62 0 5 1086 4661 157 55 7 chr3 65782753 65782853 -93816930 + Lx9 LINE L1 7524 7622 -22 5 1086 474 284 7 41 chr3 65782889 65783036 -93816747 + RSINE1 SINE B4 2 143 -22 5 1086 228 280 53 21 chr3 65783490 65783585 -93816198 + MER96B DNA hAT 14 111 -306 5 1086 594 232 75 50 chr3 65783620 65783779 -93816004 - RSINE1 SINE B4 0 165 3 5 1086 3566 35 28 9 chr3 65783877 65784305 -93815478 + RLTR10C LTR ERVK 1 436 0 5 1086 335 316 99 6 chr3 65784469 65784641 -93815142 - MLT1C LTR MaLR -270 197 10 5 1086 1286 206 62 156 chr3 65785664 65785818 -93813965 + MTD LTR MaLR 14 110 -309 5 1086 1210 48 0 0 chr3 65785818 65785965 -93813818 - B1_Mm SINE Alu 0 147 1 5 1086 1286 206 62 156 chr3 65785965 65786160 -93813623 + MTD LTR MaLR 111 314 -105 5 1086 2145 84 43 10 chr3 65786160 65786459 -93813324 - RLTR27 LTR ERVK 0 309 1 5 1086 1286 206 62 156 chr3 65786459 65786556 -93813227 + MTD LTR MaLR 315 419 0 5 1086 4170 84 11 21 chr3 65786744 65787316 -93812467 + RMER2 LTR ERV1 1 566 -1 5 1086 3950 129 47 91 chr3 65787510 65787594 -93812189 - RMER6A LTR ERVK -1 755 680 5 1086 183 42 0 0 chr3 65787594 65787618 -93812165 + (TTTG)n Simple_repeat Simple_repeat 3 26 0 5 1086 3950 129 47 91 chr3 65787618 65788323 -93811460 - RMER6A LTR ERVK -77 679 1 5 1086 252 0 0 0 chr3 65788367 65788395 -93811388 + (TC)n Simple_repeat Simple_repeat 2 29 0 5 1086 396 0 0 0 chr3 65788395 65788438 -93811345 + (TG)n Simple_repeat Simple_repeat 1 44 0 5 1086 234 0 0 0 chr3 65788654 65788680 -93811103 + (TG)n Simple_repeat Simple_repeat 1 26 0 5 1086 229 338 74 15 chr3 65788795 65788930 -93810853 + L2 LINE L2 1081 1223 -2196 5 1086 356 350 117 0 chr3 65789099 65789322 -93810461 + L2 LINE L2 1445 1693 -1726 5 1086 293 288 36 9 chr3 65789620 65789732 -93810051 + L2 LINE L2 2728 2842 -577 5 1086 1036 177 129 0 chr3 65790235 65790467 -93809316 + RMER6C LTR ERVK 12 273 -417 5 1086 637 89 196 0 chr3 65790463 65790575 -93809208 + RMER6C LTR ERVK 557 690 0 5 1086 669 248 0 0 chr3 65790733 65790858 -93808925 + B3A SINE B2 12 136 -62 5 1086 408 295 27 0 chr3 65791874 65791986 -93807797 + B1_Mur1 SINE Alu 29 143 -6 5 1086 380 281 10 0 chr3 65791987 65792083 -93807700 + RSINE1 SINE B4 3 99 -66 5 1086 737 76 9 0 chr3 65792238 65792343 -93807440 + (TTTC)n Simple_repeat Simple_repeat 2 107 0 5 1086 803 148 8 0 chr3 65792347 65792475 -93807308 - B1_Mus1 SINE Alu -17 131 3 5 1086 22 0 0 0 chr3 65792480 65792502 -93807281 + AT_rich Low_complexity Low_complexity 1 22 0 5 1086 987 103 39 0 chr3 65793565 65793720 -93806063 + B2_Mm2 SINE B2 1 161 -34 5 1086 207 0 0 0 chr3 65793720 65793743 -93806040 + (TAAA)n Simple_repeat Simple_repeat 4 26 0 5 1086 1249 84 44 16 chr3 65793771 65793953 -93805830 - B2_Mm2 SINE B2 -8 187 1 5 1086 584 196 6 159 chr3 65794151 65794327 -93805456 + B1_Mur2 SINE Alu 1 149 0 5 1086 249 57 0 0 chr3 65794335 65794370 -93805413 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 5 1086 244 324 36 0 chr3 65794584 65794695 -93805088 - HAL1 LINE L1 -712 1795 1681 5 1086 1004 132 14 0 chr3 65794852 65794996 -93804787 - B1_Mur4 SINE Alu -4 146 1 5 1086 339 232 10 48 chr3 65795236 65795340 -93804443 + ID_B1 SINE B4 77 176 -48 5 1086 355 216 22 24 chr3 65795248 65795352 -93804431 + B1F1 SINE Alu 7 109 -8 5 1086 715 136 0 31 chr3 65795383 65795512 -93804271 + B1_Mus1 SINE Alu 12 136 -12 5 1086 414 57 0 0 chr3 65795512 65795565 -93804218 + (TC)n Simple_repeat Simple_repeat 2 54 0 5 1086 34 0 0 0 chr3 65796085 65796119 -93803664 + AT_rich Low_complexity Low_complexity 1 34 0 5 1086 986 220 33 28 chr3 65796119 65796334 -93803449 - B3 SINE B2 0 216 1 5 1086 822 134 0 0 chr3 65797166 65797293 -93802490 - B1_Mur4 SINE Alu -21 129 3 5 1086 223 186 16 33 chr3 65797414 65797475 -93802308 + T-rich Low_complexity Low_complexity 1 60 0 5 1086 644 238 34 0 chr3 65797636 65797783 -93802000 + B3A SINE B2 1 152 -46 5 1086 333 0 0 0 chr3 65797783 65797820 -93801963 + (TG)n Simple_repeat Simple_repeat 2 38 0 5 135 730 189 14 7 chr3 65798123 65798262 -93801521 - B1_Mur2 SINE Alu -8 141 2 5 1087 368 161 24 41 chr3 65798636 65798759 -93801024 + (TATG)n Simple_repeat Simple_repeat 1 121 0 5 1087 801 176 50 33 chr3 65799814 65799996 -93799787 - B2_Mm2 SINE B2 -9 186 2 5 1087 518 246 263 0 chr3 65800125 65800296 -93799487 - B3 SINE B2 0 216 1 5 1087 3949 89 41 11 chr3 65800718 65801028 -93798755 + RLTR33 LTR ERVK 1 311 -367 5 1087 2288 108 12 12 chr3 65801028 65801355 -93798428 + ORR1A2 LTR MaLR 1 327 0 5 1087 3949 89 41 11 chr3 65801355 65801654 -93798129 + RLTR33 LTR ERVK 312 628 -50 5 1087 963 237 83 32 chr3 65801662 65802013 -93797770 + RLTR26 LTR ERVK 5 409 -233 5 1087 1903 44 0 0 chr3 65802013 65802240 -93797543 - L1_Mus1 LINE L1 -534 6032 5806 5 1087 4282 55 6 2 chr3 65802240 65802766 -93797017 + L1_Mus1 LINE L1 6040 6567 0 5 1087 354 80 0 0 chr3 65802924 65802974 -93796809 + (CACCAT)n Simple_repeat Simple_repeat 1 50 0 5 1087 306 111 0 53 chr3 65803079 65803136 -93796647 + RLTR33 LTR ERVK 625 678 0 5 1087 3701 190 44 181 chr3 65803751 65803780 -93796003 - RMER1B Other Other -5 1061 1037 5 1087 957 116 18 0 chr3 65803780 65803944 -93795839 + (TCTCCC)n Simple_repeat Simple_repeat 4 170 0 5 1087 459 0 0 0 chr3 65803944 65803994 -93795789 + (TTTC)n Simple_repeat Simple_repeat 2 52 0 5 1087 3701 190 44 181 chr3 65803994 65805192 -93794591 - RMER1B Other Other -30 1036 2 5 1087 3459 35 0 0 chr3 65805495 65805891 -93793892 + MTA_Mm LTR MaLR 1 396 0 5 1087 9382 33 3 0 chr3 65805891 65806986 -93792797 + MTA_Mm-int LTR MaLR 1 1098 0 5 1087 3401 38 5 0 chr3 65806986 65807380 -93792403 + MTA_Mm LTR MaLR 1 396 0 5 1087 990 161 41 72 chr3 65807674 65807895 -93791888 - B3 SINE B2 -2 214 1 5 1087 705 226 29 0 chr3 65808894 65809031 -93790752 - B1F2 SINE Alu -7 142 2 5 1087 780 301 32 14 chr3 65809094 65809377 -93790406 + B4A SINE B4 1 288 -4 5 1087 25 31 0 0 chr3 65810011 65810043 -93789740 + AT_rich Low_complexity Low_complexity 1 32 0 5 1087 607 257 126 22 chr3 65810048 65810231 -93789552 - B3 SINE B2 -11 205 4 5 1087 395 247 0 12 chr3 65810650 65810661 -93789122 - ID_B1 SINE B4 -53 171 87 5 1087 477 160 0 0 chr3 65810661 65810736 -93789047 - PB1D10 SINE Alu -37 80 6 5 1087 2060 201 47 5 chr3 65810864 65811268 -93788515 - MTC LTR MaLR 0 421 1 5 1087 872 279 52 0 chr3 65812332 65812583 -93787200 + MER2 DNA MER2_type 82 345 0 5 1087 636 283 7 0 chr3 65813151 65813296 -93786487 - RSINE1 SINE B4 -19 146 1 5 1087 1144 191 34 0 chr3 65813324 65813533 -93786250 - B3 SINE B2 0 216 1 5 1087 666 268 16 32 chr3 65813592 65813777 -93786006 - B3A SINE B2 0 198 17 5 1087 385 236 82 0 chr3 65814440 65814550 -93785233 - PB1D7 SINE Alu 0 120 2 6 1087 1507 236 88 40 chr3 65814637 65814748 -93785035 - RLTR20B3 LTR ERVK 0 563 468 6 1087 333 0 0 0 chr3 65814748 65814785 -93784998 + (CA)n Simple_repeat Simple_repeat 1 37 0 6 1087 1507 223 104 24 chr3 65814785 65815225 -93784558 - RLTR20B3 LTR ERVK -107 470 1 6 1087 909 221 35 5 chr3 65815265 65815465 -93784318 + B3 SINE B2 1 206 -10 6 1087 21 0 0 0 chr3 65815497 65815518 -93784265 + AT_rich Low_complexity Low_complexity 1 21 0 6 1087 320 202 180 0 chr3 65815840 65815929 -93783854 + ORR1C2 LTR MaLR 1 105 -269 6 1087 661 149 57 8 chr3 65815948 65816070 -93783713 + B1_Mur3 SINE Alu 12 139 -10 6 1087 396 55 0 0 chr3 65816093 65816148 -93783635 + (CAAAA)n Simple_repeat Simple_repeat 3 57 0 6 1087 1061 194 69 25 chr3 65816180 65816455 -93783328 + ORR1C2 LTR MaLR 98 384 0 6 1087 1052 193 18 59 chr3 65816805 65817025 -93782758 + B3 SINE B2 1 211 -5 6 1087 423 0 0 0 chr3 65818466 65818513 -93781270 + (GA)n Simple_repeat Simple_repeat 1 47 0 6 1087 826 209 104 9 chr3 65818933 65819145 -93780638 - ORR1D1 LTR MaLR 0 374 143 6 1087 570 243 20 14 chr3 65819153 65819299 -93780484 - B1F2 SINE Alu -1 148 2 6 1087 2809 15 95 0 chr3 65819328 65819654 -93780129 - IAPEY2_LTR LTR ERVK 0 357 1 6 1087 590 324 53 33 chr3 65820393 65820754 -93779029 - Tigger8 DNA MER2_type -175 491 124 6 1087 1290 233 116 18 chr3 65821026 65821363 -93778420 + ORR1D2 LTR MaLR 1 370 0 6 1087 440 122 77 11 chr3 65821567 65821658 -93778125 - B1_Mur3 SINE Alu -7 142 46 6 1087 562 265 65 36 chr3 65821667 65821945 -93777838 - Lx7 LINE L1 -388 7308 7023 6 1087 238 185 169 0 chr3 65821979 65822044 -93777739 + Lx7 LINE L1 7605 7680 -16 6 1087 21 36 0 0 chr3 65822044 65822072 -93777711 + AT_rich Low_complexity Low_complexity 1 28 0 6 1087 734 183 46 60 chr3 65822831 65822982 -93776801 + B1_Mur3 SINE Alu 1 149 0 6 1087 216 0 0 0 chr3 65822982 65823006 -93776777 + (A)n Simple_repeat Simple_repeat 1 24 0 6 1087 215 345 32 103 chr3 65823051 65823177 -93776606 - PB1D10 SINE Alu 0 117 1 6 1087 961 282 84 67 chr3 65823368 65823819 -93775964 + MLT2B3 LTR ERVL 193 671 -46 6 1087 269 300 22 22 chr3 65823851 65823943 -93775840 - L1MC4 LINE L1 -612 7430 7339 6 1087 2257 178 27 7 chr3 65823964 65824377 -93775406 - MTC LTR MaLR 0 421 1 6 1087 264 236 191 11 chr3 65824519 65824613 -93775170 - PB1 SINE Alu -11 116 6 6 1087 667 306 98 10 chr3 65824635 65825078 -93774705 - L1MC4 LINE L1 -1041 7001 6488 6 1087 668 235 7 7 chr3 65825159 65825296 -93774487 - B1_Mur1 SINE Alu -11 138 2 6 1087 1021 91 11 22 chr3 65826947 65827127 -93772656 + (TTCC)n Simple_repeat Simple_repeat 1 178 0 6 1087 1215 39 0 33 chr3 65827150 65827334 -93772449 + (TTCC)n Simple_repeat Simple_repeat 3 180 0 6 1087 450 0 0 0 chr3 65827336 65827386 -93772397 + (TTTC)n Simple_repeat Simple_repeat 3 52 0 6 1087 1510 50 16 6 chr3 65827387 65827570 -93772213 - B2_Mm2 SINE B2 -8 187 3 6 1087 724 233 27 38 chr3 65827888 65828134 -93771649 - ORR1D1 LTR MaLR -140 227 1 6 1087 414 0 0 0 chr3 65828201 65828247 -93771536 + (CA)n Simple_repeat Simple_repeat 2 47 0 6 1087 291 221 153 0 chr3 65828322 65828419 -93771364 - PB1D7 SINE Alu -2 125 1 6 1087 450 0 0 0 chr3 65828747 65828797 -93770986 + (CA)n Simple_repeat Simple_repeat 1 50 0 6 1087 518 347 109 6 chr3 65828833 65829155 -93770628 + L2 LINE L2 1883 2237 -1182 6 1087 260 339 94 135 chr3 65829840 65830106 -93769677 + ORR1E LTR MaLR 82 336 -23 6 1087 1635 129 65 27 chr3 65830136 65830342 -93769441 - ORR1C1 LTR MaLR 0 378 181 6 1087 519 17 0 0 chr3 65830342 65830402 -93769381 + (GA)n Simple_repeat Simple_repeat 2 61 0 6 1087 1635 179 58 62 chr3 65830402 65830603 -93769180 - ORR1C1 LTR MaLR -198 196 3 6 1087 474 286 117 0 chr3 65830991 65831145 -93768638 + B4A SINE B4 112 283 -9 6 1087 357 82 0 0 chr3 65831152 65831201 -93768582 + (CA)n Simple_repeat Simple_repeat 1 49 0 6 1087 241 186 0 0 chr3 65831239 65831282 -93768501 + RSINE1 SINE B4 4 46 -119 6 1087 194 68 15 92 chr3 65831782 65831847 -93767936 + T-rich Low_complexity Low_complexity 2 61 0 6 1087 519 17 0 0 chr3 65833191 65833251 -93766532 + (TCTA)n Simple_repeat Simple_repeat 2 61 0 6 1087 897 166 0 0 chr3 65833251 65833396 -93766387 - B1_Mus1 SINE Alu -1 147 3 6 1087 21 36 0 0 chr3 65833411 65833439 -93766344 + AT_rich Low_complexity Low_complexity 1 28 0 6 1087 8164 48 1 3 chr3 65833899 65835094 -93764689 - L1Md_F2 LINE L1 0 6582 5392 6 1087 859 88 0 51 chr3 65835410 65835566 -93764217 - L1Md_F2 LINE L1 0 6582 6435 6 1087 397 292 50 8 chr3 65836236 65836357 -93763426 + RSINE1 SINE B4 3 128 -37 6 1087 474 18 0 0 chr3 65836367 65836422 -93763361 + (CA)n Simple_repeat Simple_repeat 2 56 0 6 1087 315 0 0 0 chr3 65836422 65836456 -93763327 + (GA)n Simple_repeat Simple_repeat 2 36 0 6 1087 416 71 353 39 chr3 65837726 65837828 -93761955 - B2_Mm2 SINE B2 -15 180 47 6 1087 1188 119 11 22 chr3 65837894 65838075 -93761708 - B2_Mm1t SINE B2 -14 179 1 6 1087 4798 145 53 14 chr3 65838075 65838928 -93760855 - RMER19B LTR ERVK -16 886 1 6 1087 45 0 0 0 chr3 65840426 65840471 -93759312 + AT_rich Low_complexity Low_complexity 1 45 0 6 1087 648 102 0 0 chr3 65840601 65840699 -93759084 + (GA)n Simple_repeat Simple_repeat 2 99 0 6 1087 258 246 83 42 chr3 65840764 65840836 -93758947 - Lx7 LINE L1 -417 7279 7205 6 1087 6790 202 64 30 chr3 65840926 65842408 -93757375 - Lx6 LINE L1 -179 7281 5749 6 1087 2243 146 58 48 chr3 65842392 65842712 -93757071 - Lx6 LINE L1 -257 5623 5305 6 1087 4453 63 30 8 chr3 65842712 65843302 -93756481 + L1_Mus4 LINE L1 6033 6635 -1 6 1087 2243 148 53 46 chr3 65843302 65843405 -93756378 - Lx6 LINE L1 -576 5304 5204 6 1087 3847 175 43 3 chr3 65843856 65844549 -93755234 + Lx5 LINE L1 6328 7048 -2 6 1087 2477 263 48 22 chr3 65844676 65845434 -93754349 - L1MA7 LINE L1 -4 6287 5511 6 1087 894 189 0 20 chr3 65846229 65846380 -93753403 - B1_Mur2 SINE Alu -1 148 1 6 1087 292 258 65 32 chr3 65846904 65847028 -93752755 + L1ME2z LINE L1 5650 5777 -385 6 1087 229 266 30 30 chr3 65847057 65847123 -93752660 + L1ME2z LINE L1 5863 5928 -234 6 1087 229 309 73 0 chr3 65847137 65847247 -93752536 + L1ME2z LINE L1 5991 6108 -336 6 1087 231 305 61 0 chr3 65847367 65847498 -93752285 + L1M5 LINE L1 5293 5431 -809 6 1087 435 194 42 100 chr3 65847669 65847789 -93751994 - RSINE1 SINE B4 -41 124 12 6 1087 237 224 128 39 chr3 65847918 65848020 -93751763 + L1_Mur3 LINE L1 474 584 -7128 6 1087 821 181 0 6 chr3 65848034 65848212 -93751571 + (TG)n Simple_repeat Simple_repeat 2 178 0 6 1087 747 219 0 0 chr3 65848256 65848434 -93751349 + (TG)n Simple_repeat Simple_repeat 1 178 0 6 1087 230 207 17 0 chr3 65848432 65848490 -93751293 + (TATG)n Simple_repeat Simple_repeat 4 62 0 6 1087 1866 223 108 121 chr3 65848551 65849552 -93750231 + Lx9 LINE L1 4953 5977 -1667 6 1087 695 108 9 0 chr3 65849874 65849985 -93749798 + (TTTC)n Simple_repeat Simple_repeat 4 115 0 6 1087 253 91 476 38 chr3 65849988 65850091 -93749692 - B2_Mm2 SINE B2 0 195 48 6 1087 1193 92 27 65 chr3 65850135 65850279 -93749504 - B2_Mm1t SINE B2 -14 179 35 6 1087 195 42 0 0 chr3 65850279 65850303 -93749480 + (C)n Simple_repeat Simple_repeat 1 24 0 6 1087 1087 53 8 0 chr3 65850303 65850436 -93749347 - B1_Mus1 SINE Alu -13 135 2 6 1087 1193 92 27 65 chr3 65850436 65850476 -93749307 - B2_Mm1t SINE B2 -159 34 2 6 1087 462 115 21 10 chr3 65851841 65851938 -93747845 + Lx2 LINE L1 6899 6996 -1 6 1087 371 298 174 47 chr3 65852664 65852763 -93747020 + Kanga1c DNA Tc2 338 437 -292 6 1087 1824 121 43 92 chr3 65852763 65853109 -93746674 + ORR1A4 LTR MaLR 1 329 0 6 1087 371 298 174 47 chr3 65853109 65853326 -93746457 + Kanga1c DNA Tc2 438 694 -35 6 1087 640 275 25 35 chr3 65854382 65854582 -93745201 - B3A SINE B2 0 198 1 6 1087 195 42 0 0 chr3 65854691 65854715 -93745068 + (T)n Simple_repeat Simple_repeat 1 24 0 6 1087 908 234 50 0 chr3 65854747 65854948 -93744835 + B3 SINE B2 1 211 -5 6 1087 274 223 232 86 chr3 65855130 65855382 -93744401 + L1MA6 LINE L1 6011 6299 -1 6 1087 2738 80 3 8 chr3 65855398 65855789 -93743994 + MTA_Mm LTR MaLR 1 389 -7 6 1087 285 29 0 0 chr3 65857097 65857131 -93742652 + (TG)n Simple_repeat Simple_repeat 1 34 0 6 1087 637 325 16 65 chr3 65857335 65857429 -93742354 - B4A SINE B4 -1 291 208 6 1087 1795 197 21 32 chr3 65857429 65857806 -93741977 - ORR1D1 LTR MaLR -1 373 1 6 1087 637 325 16 65 chr3 65857806 65858017 -93741766 - B4A SINE B4 -85 207 1 6 1087 341 284 104 20 chr3 65858792 65858993 -93740790 - MLT1E1 LTR MaLR -19 635 418 6 1087 272 295 138 41 chr3 65859150 65859295 -93740488 - MLT1E1 LTR MaLR -396 164 6 6 1087 1003 267 41 55 chr3 65859662 65860007 -93739776 + ORR1E LTR MaLR 20 359 0 6 1087 1120 80 0 0 chr3 65860083 65860221 -93739562 - B1_Mus1 SINE Alu -10 138 1 6 1087 1847 27 9 0 chr3 65860235 65860459 -93739324 + L1Md_F2 LINE L1 6354 6579 -3 6 1087 198 0 0 0 chr3 65860520 65860542 -93739241 + (TTAA)n Simple_repeat Simple_repeat 3 24 0 6 1087 539 248 43 7 chr3 65860573 65860711 -93739072 - RSINE1 SINE B4 -21 144 2 6 1087 228 371 65 0 chr3 65861912 65862036 -93737747 + Charlie2b DNA MER1_type 166 297 -2485 6 1087 900 303 63 7 chr3 65862157 65862426 -93737357 - B4A SINE B4 -6 286 3 6 1087 318 266 119 93 chr3 65862431 65862615 -93737168 + Charlie2b DNA MER1_type 2194 2401 -381 6 1087 557 254 159 6 chr3 65862615 65862785 -93736998 + B3A SINE B2 2 197 -1 6 1087 318 266 119 93 chr3 65862785 65863169 -93736614 + Charlie2b DNA MER1_type 2402 2777 -5 6 1087 252 158 0 0 chr3 65863321 65863378 -93736405 + GA-rich Low_complexity Low_complexity 2 58 0 6 1087 758 216 89 0 chr3 65864173 65864363 -93735420 + MLT2B2 LTR ERVL 1 207 -308 6 1087 278 148 62 47 chr3 65864420 65864484 -93735299 + PB1D9 SINE Alu 49 113 -7 6 1087 342 237 122 10 chr3 65864522 65864620 -93735163 + PB1D9 SINE Alu 2 110 -10 6 1087 381 278 122 32 chr3 65865249 65865405 -93734378 + B3 SINE B2 41 210 -6 6 1087 1063 242 181 3 chr3 65866116 65866467 -93733316 - MTD LTR MaLR -21 398 1 6 1087 267 31 0 0 chr3 65869131 65869163 -93730620 + (TGG)n Simple_repeat Simple_repeat 2 33 0 6 1087 231 258 31 31 chr3 65869437 65869533 -93730250 - LTR33 LTR ERVL -9 506 411 7 1087 1234 41 0 0 chr3 65869646 65869792 -93729991 - B1_Mus2 SINE Alu 0 147 2 7 1087 242 336 28 7 chr3 65870920 65871061 -93728722 + MER5A DNA MER1_type 10 153 -36 7 1087 220 179 0 0 chr3 65871342 65871381 -93728402 + (TG)n Simple_repeat Simple_repeat 2 40 0 7 1087 630 296 87 44 chr3 65871382 65871657 -93728126 - B4 SINE B4 -2 290 4 7 1087 596 14 14 0 chr3 65872047 65872120 -93727663 + (TCTA)n Simple_repeat Simple_repeat 4 77 0 7 1087 450 0 0 0 chr3 65873759 65873809 -93725974 + (CA)n Simple_repeat Simple_repeat 2 51 0 7 1087 249 265 56 56 chr3 65874150 65874294 -93725489 + RMER15 LTR ERVL 2 145 -430 7 1087 396 252 126 26 chr3 65874343 65874494 -93725289 + RMER15 LTR ERVL 276 441 -134 7 1087 980 270 118 57 chr3 65874513 65875040 -93724743 - L1_Mur3 LINE L1 -536 5344 4786 7 1087 254 309 10 96 chr3 65875082 65875186 -93724597 - PB1 SINE Alu -20 107 13 7 1087 23 0 0 0 chr3 65875189 65875212 -93724571 + AT_rich Low_complexity Low_complexity 1 23 0 7 1087 39360 5 0 0 chr3 65875319 65880890 -93718893 + L1Md_A LINE L1 16 5586 -297 7 1087 9147 5 0 0 chr3 65880890 65881886 -93717897 + L1Md_A LINE L1 5587 6582 0 7 1087 234 91 0 0 chr3 65881904 65881937 -93717846 + (A)n Simple_repeat Simple_repeat 1 33 0 7 1087 195 42 0 0 chr3 65881955 65881979 -93717804 + (CG)n Simple_repeat Simple_repeat 2 25 0 7 1087 249 57 0 0 chr3 65881979 65882013 -93717770 + (CA)n Simple_repeat Simple_repeat 1 35 0 7 1087 395 254 99 8 chr3 65882413 65882544 -93717239 - ID_B1 SINE B4 -37 187 45 7 1087 189 74 0 0 chr3 65883416 65883443 -93716340 + (TA)n Simple_repeat Simple_repeat 2 28 0 7 1087 338 0 24 0 chr3 65883469 65883511 -93716272 + (CA)n Simple_repeat Simple_repeat 2 44 0 7 1087 233 137 0 38 chr3 65883576 65883629 -93716154 + G-rich Low_complexity Low_complexity 6 56 0 7 1087 400 218 23 0 chr3 65883800 65883887 -93715896 - PB1D10 SINE Alu 0 117 29 7 1087 1239 89 0 0 chr3 65884156 65884335 -93715448 + (TG)n Simple_repeat Simple_repeat 1 179 0 7 1087 234 0 0 0 chr3 65885301 65885327 -93714456 + (A)n Simple_repeat Simple_repeat 1 26 0 7 1087 313 39 39 0 chr3 65888089 65888140 -93711643 + (TTTTTG)n Simple_repeat Simple_repeat 2 54 0 7 1087 2452 97 18 33 chr3 65888359 65888691 -93711092 - ORR1A2 LTR MaLR 0 327 1 7 1087 10212 132 85 35 chr3 65888691 65889593 -93710190 - ORR1A2-int LTR MaLR 0 1792 908 7 1087 1484 75 32 5 chr3 65889593 65889782 -93710001 + B2_Mm2 SINE B2 2 195 0 7 1087 10212 132 85 35 chr3 65889782 65890586 -93709197 - ORR1A2-int LTR MaLR -885 907 1 7 1087 2375 95 36 60 chr3 65890586 65890921 -93708862 - ORR1A2 LTR MaLR 0 327 1 7 1087 282 277 24 0 chr3 65891188 65891271 -93708512 + CT-rich Low_complexity Low_complexity 3 87 0 7 1087 996 127 97 26 chr3 65892029 65892183 -93707600 - U1 snRNA snRNA 0 165 1 7 1087 1321 260 67 28 chr3 65892870 65893296 -93706487 + RLTR20C LTR ERVK 77 518 -16 7 1087 192 200 0 0 chr3 65893744 65893789 -93705994 + (CA)n Simple_repeat Simple_repeat 2 46 0 7 1087 396 0 0 0 chr3 65894860 65894904 -93704879 + (CA)n Simple_repeat Simple_repeat 2 45 0 7 1087 227 147 0 0 chr3 65894949 65894983 -93704800 + MLT1E1 LTR MaLR 305 338 -316 7 1087 476 297 47 8 chr3 65895573 65895702 -93704081 + RSINE1 SINE B4 23 156 -9 7 1087 436 233 36 10 chr3 65896664 65896783 -93703000 - PB1 SINE Alu 0 127 11 7 1087 251 222 47 151 chr3 65896688 65896794 -93702989 - MT2B2 LTR ERVL -328 256 162 7 1087 340 316 0 0 chr3 65896822 65896898 -93702885 + ID4_ SINE ID 1 76 -7 7 1087 457 306 47 24 chr3 65898255 65898466 -93701317 + RMER15 LTR ERVL 343 558 -17 7 1087 14336 76 22 10 chr3 65898956 65901551 -93698232 - L1_Mus2 LINE L1 0 6566 3943 7 1087 724 266 46 46 chr3 65901771 65902008 -93697775 + B4A SINE B4 1 237 -55 7 1087 330 115 0 0 chr3 65902057 65902109 -93697674 + (CA)n Simple_repeat Simple_repeat 2 53 0 7 1087 286 307 11 0 chr3 65902814 65902902 -93696881 - L1M5 LINE L1 -581 5613 5525 7 1087 810 127 8 8 chr3 65903255 65903382 -93696401 + B1_Mur4 SINE Alu 18 144 -6 7 1087 439 167 34 11 chr3 65903477 65903570 -93696213 + B3 SINE B2 8 108 -90 7 1087 212 146 36 0 chr3 65903606 65903661 -93696122 + (CAGAGA)n Simple_repeat Simple_repeat 4 60 0 7 1087 410 243 69 43 chr3 65904260 65904376 -93695407 - RSINE1 SINE B4 -2 163 45 7 1087 198 0 0 0 chr3 65904836 65904858 -93694925 + (GA)n Simple_repeat Simple_repeat 1 22 0 7 1087 1313 62 0 6 chr3 65904858 65905035 -93694748 + (GGGAGA)n Simple_repeat Simple_repeat 3 178 0 7 1087 211 286 33 67 chr3 65905082 65905172 -93694611 - B3A SINE B2 -37 161 75 7 1087 2053 164 69 3 chr3 65906922 65907271 -93692512 - ORR1D1 LTR MaLR -2 372 1 7 1087 203 0 37 0 chr3 65907375 65907402 -93692381 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 7 1087 639 270 13 20 chr3 65907404 65907555 -93692228 - ID_B1 SINE B4 -26 198 49 7 1087 463 67 13 26 chr3 65907774 65907851 -93691932 + (TTTTTG)n Simple_repeat Simple_repeat 2 77 0 7 1087 231 36 0 0 chr3 65908228 65908256 -93691527 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 7 1087 39 0 0 0 chr3 65908321 65908360 -93691423 + AT_rich Low_complexity Low_complexity 1 39 0 7 1087 284 387 0 0 chr3 65908419 65908525 -93691258 + (TG)n Simple_repeat Simple_repeat 1 106 0 7 1087 736 339 72 12 chr3 65908559 65908810 -93690973 - B4 SINE B4 -26 266 1 7 1087 223 284 49 0 chr3 65909140 65909221 -93690562 - MIRb SINE MIR -11 257 173 7 1087 2707 186 24 57 chr3 65910887 65911434 -93688349 + RLTR24 LTR ERV1 1 529 0 7 1087 1049 264 76 9 chr3 65911528 65911857 -93687926 - L1M2 LINE L1 -562 5738 5388 7 1087 736 243 7 0 chr3 65911897 65912041 -93687742 + RSINE1 SINE B4 3 147 -18 7 1087 261 139 0 0 chr3 65912226 65912269 -93687514 + (TCC)n Simple_repeat Simple_repeat 2 44 0 7 1087 636 252 22 0 chr3 65912450 65912585 -93687198 + ID_B1 SINE B4 87 224 0 7 1087 717 187 0 29 chr3 65913302 65913440 -93686343 + MTD LTR MaLR 60 193 -226 7 1087 549 105 57 0 chr3 65913559 65913664 -93686119 + GA-rich Low_complexity Low_complexity 4 114 0 7 1087 967 243 27 5 chr3 65913666 65913885 -93685898 + MTD LTR MaLR 196 419 0 7 1087 575 250 12 50 chr3 65913885 65914043 -93685740 - B4 SINE B4 -56 236 85 7 1087 227 295 49 0 chr3 65914048 65914109 -93685674 - PB1 SINE Alu -63 64 1 7 1087 21 57 0 0 chr3 65914592 65914627 -93685156 + AT_rich Low_complexity Low_complexity 1 35 0 7 1087 968 166 214 31 chr3 65914769 65915074 -93684709 - RMER1B Other Other -3 1063 603 7 1087 2223 97 3 59 chr3 65915075 65915415 -93684368 + ORR1A4 LTR MaLR 1 321 -8 7 1087 1555 244 80 162 chr3 65915416 65916340 -93683443 - RMER1A Other Other -395 671 35 7 1087 3682 191 98 116 chr3 65916644 65916764 -93683019 - RMER1A Other Other 0 1030 874 7 1087 468 0 0 0 chr3 65916764 65916816 -93682967 + (CA)n Simple_repeat Simple_repeat 2 53 0 7 1087 3682 206 96 101 chr3 65916816 65917881 -93681902 - RMER1A Other Other -157 873 4 7 1087 228 277 76 15 chr3 65917995 65918061 -93681722 - PB1D10 SINE Alu -47 70 1 7 1087 201 108 0 0 chr3 65918090 65918127 -93681656 + (T)n Simple_repeat Simple_repeat 1 37 0 7 1087 854 164 50 0 chr3 65918128 65918268 -93681515 - B1_Mur4 SINE Alu -1 149 3 7 1087 376 303 0 35 chr3 65918435 65918548 -93681235 + PB1D10 SINE Alu 1 109 -8 7 1087 212 276 18 54 chr3 65918583 65918694 -93681089 + BC1_Mm scRNA scRNA 18 124 -28 7 1087 1298 286 20 3 chr3 65918877 65919221 -93680562 + ORR1E LTR MaLR 4 353 -6 7 1087 234 191 0 0 chr3 65919445 65919492 -93680291 + CT-rich Low_complexity Low_complexity 2 48 0 7 1087 1939 83 23 4 chr3 65919492 65919758 -93680025 - L1_Mus4 LINE L1 0 6636 6366 7 1087 946 160 206 20 chr3 65919880 65919905 -93679878 + ORR1D1 LTR MaLR 133 157 -217 7 1087 612 0 0 0 chr3 65919905 65919973 -93679810 + (TC)n Simple_repeat Simple_repeat 1 68 0 7 1087 946 160 206 20 chr3 65919973 65920151 -93679632 + ORR1D1 LTR MaLR 158 373 -1 7 1087 211 291 13 0 chr3 65920530 65920554 -93679229 + polypurine Low_complexity Low_complexity 1 24 0 7 1087 243 0 0 0 chr3 65920554 65920581 -93679202 + (CTGGGG)n Simple_repeat Simple_repeat 3 29 0 7 1087 211 291 13 0 chr3 65920581 65920635 -93679148 + GA-rich Low_complexity Low_complexity 25 79 0 7 1087 519 135 0 0 chr3 65920645 65920741 -93679042 + (GA)n Simple_repeat Simple_repeat 1 96 0 7 1087 291 54 0 0 chr3 65921616 65921653 -93678130 + (TG)n Simple_repeat Simple_repeat 2 38 0 7 1087 538 311 43 83 chr3 65922402 65922704 -93677079 - B4A SINE B4 0 292 3 7 1087 781 247 63 25 chr3 65922761 65923047 -93676736 + L1MA6 LINE L1 5997 6293 -7 7 1087 429 333 71 88 chr3 65923310 65923605 -93676178 - MLT1A1 LTR MaLR -25 383 89 7 1087 5757 15 0 0 chr3 65923605 65924215 -93675568 - L1Md_A LINE L1 0 6582 5973 7 1087 429 333 71 88 chr3 65924215 65924284 -93675499 - MLT1A1 LTR MaLR -320 88 27 7 1087 1092 175 48 29 chr3 65924803 65925009 -93674774 - B3 SINE B2 -6 210 1 7 1087 216 158 0 0 chr3 65925160 65925198 -93674585 + (CTA)n Simple_repeat Simple_repeat 2 39 0 7 1087 393 75 0 0 chr3 65925198 65925251 -93674532 + (CCA)n Simple_repeat Simple_repeat 3 55 0 7 1087 418 294 11 0 chr3 65925253 65925345 -93674438 - PB1D10 SINE Alu -10 107 15 7 1087 1139 50 0 0 chr3 65925891 65926032 -93673751 - L1Md_F2 LINE L1 -13 6569 6429 7 1087 474 33 0 0 chr3 65927207 65927267 -93672516 + (CAAAA)n Simple_repeat Simple_repeat 2 61 0 7 1087 580 333 58 29 chr3 65927655 65927967 -93671816 - Lx8 LINE L1 -4 7469 7149 7 1087 2277 307 59 20 chr3 65927958 65928739 -93671044 - Lx8 LINE L1 -444 7029 6219 7 1087 22 35 0 0 chr3 65928739 65928768 -93671015 + AT_rich Low_complexity Low_complexity 1 29 0 7 1087 418 307 35 17 chr3 65928788 65928904 -93670879 - RSINE1 SINE B4 0 165 48 7 1088 210 294 22 66 chr3 65929555 65929646 -93670137 - B4 SINE B4 -204 88 2 7 1088 279 0 0 0 chr3 65930566 65930597 -93669186 + (AAATG)n Simple_repeat Simple_repeat 4 34 0 7 1088 917 283 196 14 chr3 65931601 65931999 -93667784 - MTE-int LTR MaLR -896 474 38 8 1088 352 260 81 117 chr3 65932002 65932200 -93667583 - MTEa LTR MaLR -2 377 187 8 1088 265 246 29 6 chr3 65932213 65932293 -93667490 + MTEb LTR MaLR 7 85 -294 8 1088 1156 233 72 8 chr3 65933711 65933975 -93665808 + MTEb LTR MaLR 96 376 -3 8 1088 343 298 22 58 chr3 65933982 65934121 -93665662 - MTEa LTR MaLR -222 137 4 8 1088 376 313 31 42 chr3 65934124 65934315 -93665468 - L1M2 LINE L1 -891 5252 5065 8 1088 998 238 9 28 chr3 65934315 65934531 -93665252 - B3 SINE B2 -4 212 1 8 1088 376 313 31 42 chr3 65934531 65934626 -93665157 - L1M2 LINE L1 -1079 5064 4969 8 1088 595 122 0 0 chr3 65934757 65934839 -93664944 - B2_Mm2 SINE B2 -113 82 1 8 1088 180 0 0 0 chr3 65934866 65934886 -93664897 + (TG)n Simple_repeat Simple_repeat 1 20 0 8 1088 350 198 93 65 chr3 65936533 65936641 -93663142 + B1_Mus2 SINE Alu 13 123 -26 8 1088 1504 93 0 31 chr3 65936713 65936935 -93662848 + L1_Mus4 LINE L1 6418 6632 -4 8 1088 1051 258 22 69 chr3 65937226 65937362 -93662421 - Lx8 LINE L1 -1548 5925 5754 8 1088 1427 45 62 0 chr3 65937362 65937538 -93662245 - B2_Mm2 SINE B2 -7 188 2 8 1088 1051 250 19 71 chr3 65937538 65937769 -93662014 - Lx8 LINE L1 -94 5753 5538 8 1088 607 166 149 33 chr3 65937897 65938078 -93661705 - Lx2B LINE L1 0 7000 6799 8 1088 458 244 150 36 chr3 65938374 65938514 -93661269 + B3A SINE B2 2 157 -41 8 1088 306 0 0 0 chr3 65938519 65938553 -93661230 + (CA)n Simple_repeat Simple_repeat 2 35 0 8 1088 337 225 25 67 chr3 65940403 65940522 -93659261 + Lx8 LINE L1 7360 7473 0 8 1088 26 64 0 0 chr3 65940633 65940680 -93659103 + AT_rich Low_complexity Low_complexity 1 47 0 8 1088 877 217 121 5 chr3 65940835 65941025 -93658758 + B3 SINE B2 1 212 -4 8 1088 854 251 64 148 chr3 65942436 65942829 -93656954 + MTC LTR MaLR 1 360 -61 8 1088 1503 144 25 32 chr3 65942849 65943129 -93656654 - Lx5 LINE L1 -966 6084 5807 8 1088 2741 164 5 0 chr3 65943131 65943557 -93656226 + Lx5 LINE L1 6182 6609 -441 8 1088 23 0 0 0 chr3 65943635 65943658 -93656125 + AT_rich Low_complexity Low_complexity 1 23 0 8 1088 36699 75 4 7 chr3 65943820 65950192 -93649591 - L1Md_F3 LINE L1 0 6584 238 8 1088 256 357 44 9 chr3 65950562 65950675 -93649108 - MER20 DNA MER1_type -68 151 35 8 1088 578 200 10 0 chr3 65950979 65951079 -93648704 + B1F2 SINE Alu 2 102 -47 8 1088 249 284 91 101 chr3 65951268 65951334 -93648449 + L2a LINE L2 3210 3262 -164 8 1088 2071 150 112 53 chr3 65951334 65951728 -93648055 - MTC LTR MaLR 0 421 5 8 1088 249 284 91 101 chr3 65951728 65951880 -93647903 + L2a LINE L2 3263 3426 0 8 1088 279 113 0 0 chr3 65951966 65952019 -93647764 + (CA)n Simple_repeat Simple_repeat 2 54 0 8 1088 1093 271 24 4 chr3 65952356 65952604 -93647179 + Lx8 LINE L1 6351 6603 -870 8 1088 536 0 0 0 chr3 65952775 65952839 -93646944 + L1Md_A LINE L1 6519 6582 0 8 1088 2508 263 63 22 chr3 65952846 65953539 -93646244 + Lx8 LINE L1 6614 7335 -138 8 1088 399 276 69 0 chr3 65953537 65953682 -93646101 + L1MC1 LINE L1 6103 6257 -76 8 1088 2384 227 125 63 chr3 65953690 65954673 -93645110 + RMER17B LTR ERVK 3 899 -9 8 1088 720 259 0 0 chr3 65954729 65954868 -93644915 - B1_Mur2 SINE Alu -7 142 4 8 1088 203 336 161 17 chr3 65954953 65955183 -93644600 + L2c LINE L2 2430 2692 -727 8 1088 191 318 110 40 chr3 65955227 65955499 -93644284 + L2c LINE L2 3092 3382 -5 8 1088 1875 198 110 3 chr3 65955877 65956251 -93643532 + MTD LTR MaLR 3 416 -3 8 1088 23 0 0 0 chr3 65956515 65956538 -93643245 + AT_rich Low_complexity Low_complexity 1 23 0 8 1088 2414 59 10 3 chr3 65958104 65958409 -93641374 + L1Md_A LINE L1 6276 6582 0 8 1088 468 0 0 0 chr3 65960683 65960735 -93639048 + (CA)n Simple_repeat Simple_repeat 1 52 0 8 1088 444 256 122 26 chr3 65961390 65961579 -93638204 + MER96B DNA hAT 43 249 -168 8 1088 21 0 0 0 chr3 65962251 65962272 -93637511 + AT_rich Low_complexity Low_complexity 1 21 0 8 1088 351 243 0 0 chr3 65962419 65962489 -93637294 + ID4_ SINE ID 2 71 -12 8 1088 888 206 129 10 chr3 65962759 65962960 -93636823 + URR1A DNA MER1_type 1 225 -1 8 1088 30 83 0 0 chr3 65963858 65963930 -93635853 + AT_rich Low_complexity Low_complexity 1 72 0 8 1088 656 303 5 45 chr3 65963933 65963979 -93635804 - B3 SINE B2 0 216 171 8 1088 1015 89 0 27 chr3 65963979 65964163 -93635620 + (TG)n Simple_repeat Simple_repeat 2 180 0 8 1088 656 303 5 45 chr3 65964163 65964189 -93635594 - B3 SINE B2 -46 170 150 8 1088 982 100 0 27 chr3 65964189 65964374 -93635409 + (TG)n Simple_repeat Simple_repeat 1 180 0 8 1088 656 303 5 45 chr3 65964374 65964521 -93635262 - B3 SINE B2 -67 149 5 8 1088 942 196 59 25 chr3 65964785 65964989 -93634794 - B3 SINE B2 -2 214 4 8 1088 245 207 65 105 chr3 65965442 65965566 -93634217 - MER53 DNA hAT -1 192 74 8 1088 26 30 0 0 chr3 65965598 65965631 -93634152 + AT_rich Low_complexity Low_complexity 1 33 0 8 1088 21 0 0 0 chr3 65966021 65966042 -93633741 + GC_rich Low_complexity Low_complexity 1 21 0 8 1088 182 330 133 22 chr3 65967600 65967690 -93632093 + MER5A DNA MER1_type 8 107 -82 8 1088 988 265 105 10 chr3 65968344 65968638 -93631145 - ORR1E LTR MaLR -6 353 32 8 1088 306 0 0 0 chr3 65968888 65968922 -93630861 + (TG)n Simple_repeat Simple_repeat 2 35 0 8 1088 459 279 100 8 chr3 65969364 65969494 -93630289 + MER44B DNA MER2_type 76 217 -333 8 1088 949 67 0 0 chr3 65969592 65969712 -93630071 + B1_Mm SINE Alu 21 140 -7 8 1088 483 228 146 0 chr3 65969858 65970016 -93629767 + MER44B DNA MER2_type 358 538 -12 8 1088 540 0 0 0 chr3 65970027 65970087 -93629696 + (GA)n Simple_repeat Simple_repeat 1 60 0 8 1088 195 129 0 0 chr3 65971389 65971420 -93628363 + (T)n Simple_repeat Simple_repeat 1 31 0 8 1088 866 233 28 37 chr3 65971932 65972150 -93627633 - B3 SINE B2 0 216 1 8 1088 529 215 253 7 chr3 65972247 65972397 -93627386 + B3 SINE B2 2 188 -28 8 1088 2669 254 56 60 chr3 65972389 65973285 -93626498 + RCHARR1 DNA MER1_type 79 970 -4 8 1088 379 216 26 20 chr3 65974212 65974326 -93625457 - ID4 SINE ID -34 118 6 8 1088 741 79 0 0 chr3 65974337 65974438 -93625345 + (TCCC)n Simple_repeat Simple_repeat 1 101 0 8 1088 577 317 12 0 chr3 65974665 65974829 -93624954 + MER20 DNA MER1_type 2 167 -52 8 1088 225 282 158 24 chr3 65976320 65976447 -93623336 - L2a LINE L2 -40 3386 3243 8 1088 310 246 14 0 chr3 65976800 65976869 -93622914 + ID SINE ID 2 71 -153 8 1088 187 331 139 29 chr3 65977404 65977541 -93622242 - MIR SINE MIR -29 233 82 8 1088 1019 248 98 148 chr3 65977726 65977948 -93621835 - Charlie1a DNA MER1_type -1 1454 1214 8 1088 1262 131 11 0 chr3 65977948 65978124 -93621659 + B2_Mm1t SINE B2 2 179 -14 8 1088 1019 248 98 148 chr3 65978124 65978649 -93621134 - Charlie1a DNA MER1_type -242 1213 745 8 1088 556 299 151 14 chr3 65978657 65978942 -93620841 + Lx8 LINE L1 7148 7471 -2 8 1088 473 282 19 31 chr3 65979004 65979146 -93620637 - Charlie1a DNA MER1_type -710 745 606 8 1088 784 280 126 4 chr3 65979146 65979415 -93620368 + MER2 DNA MER2_type 1 302 -43 8 1088 567 282 177 0 chr3 65979434 65979643 -93620140 - ORR1E LTR MaLR -14 345 100 8 1088 19615 167 30 16 chr3 65979643 65982953 -93616830 - MERVL_2A-int LTR ERVL -425 5336 1979 8 1088 2115 181 2 46 chr3 65982973 65983367 -93616416 + RLTR14 LTR ERV1 3 379 -3 8 1088 10485 161 62 22 chr3 65983368 65984459 -93615324 - MERVL_2A-int LTR ERVL -3779 1982 832 8 1088 801 145 58 29 chr3 65984459 65984630 -93615153 + Lx3_Mus LINE L1 6834 7009 0 8 1088 10485 161 62 22 chr3 65984630 65985436 -93614347 - MERVL_2A-int LTR ERVL -4930 831 10 8 1088 631 282 17 153 chr3 65985443 65985895 -93613888 - MT2B LTR ERVL 0 601 123 8 1088 1032 122 54 0 chr3 65985934 65986149 -93613634 + L1VL2 LINE L1 116 500 -5835 8 1088 222 37 0 0 chr3 65986149 65986176 -93613607 + (A)n Simple_repeat Simple_repeat 1 27 0 8 1088 579 185 93 0 chr3 65986176 65986284 -93613499 - MT2B LTR ERVL -415 118 1 8 1088 348 247 26 0 chr3 65986284 65986343 -93613440 - ORR1E LTR MaLR -298 61 1 8 1088 449 332 57 47 chr3 65986413 65986713 -93613070 - Charlie1a DNA MER1_type -873 582 280 8 1088 797 234 53 48 chr3 65986756 65986963 -93612820 + MER20 DNA MER1_type 10 217 -2 8 1088 554 319 26 51 chr3 65987001 65987196 -93612587 - Charlie1a DNA MER1_type -1239 216 27 8 1088 298 316 41 31 chr3 65987771 65987869 -93611914 - MER117 DNA MER1_type -29 168 70 8 1088 687 203 23 0 chr3 65988006 65988139 -93611644 - B1_Mur1 SINE Alu -1 148 13 8 1088 276 347 88 74 chr3 65988139 65988435 -93611348 - ORR1E LTR MaLR -57 302 3 8 1088 918 291 48 3 chr3 65988518 65988808 -93610975 - Lx8 LINE L1 -11 7462 7160 8 1088 690 268 6 11 chr3 65988949 65989123 -93610660 + MER82 DNA MER2_type 7 179 -474 8 1088 7043 114 15 45 chr3 65989205 65990966 -93608817 + L1VL4 LINE L1 195 1893 -1666 8 1088 8042 163 6 4 chr3 65990957 65991889 -93607894 + Lx2 LINE L1 4507 5442 -435 8 1088 323 0 48 0 chr3 65991889 65991931 -93607852 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 8 1088 9184 117 28 8 chr3 65991931 65993448 -93606335 + Lx2 LINE L1 5443 6996 -1 8 1088 588 259 23 12 chr3 65993462 65993634 -93606149 + MER82 DNA MER2_type 179 352 -301 8 1088 231 36 0 0 chr3 65993652 65993680 -93606103 + (CA)n Simple_repeat Simple_repeat 2 29 0 8 1088 591 306 5 37 chr3 65993733 65993920 -93605863 + B3A SINE B2 2 182 -16 8 1088 341 351 18 0 chr3 65994022 65994133 -93605650 + MER82 DNA MER2_type 519 631 -22 8 1088 184 294 39 0 chr3 65994194 65994245 -93605538 - L3b LINE CR1 -99 383 331 8 1088 304 253 13 13 chr3 65994336 65994412 -93605371 - ID4_ SINE ID 0 83 8 8 1088 21 0 0 0 chr3 65996048 65996069 -93603714 + AT_rich Low_complexity Low_complexity 1 21 0 8 1088 488 301 26 46 chr3 65996474 65996627 -93603156 - RSINE1 SINE B4 -4 161 12 8 1088 296 280 0 0 chr3 65996673 65996748 -93603035 + MLT2B2 LTR ERVL 1 75 -440 8 1088 286 221 0 38 chr3 65996765 65996845 -93602938 + (CATA)n Simple_repeat Simple_repeat 4 80 0 8 1088 325 250 82 12 chr3 65997070 65997155 -93602628 - RSINE1 SINE B4 -8 157 67 8 1088 261 167 0 0 chr3 65998538 65998592 -93601191 + GA-rich Low_complexity Low_complexity 2 55 0 8 1088 198 91 0 0 chr3 65998592 65998625 -93601158 + (CAGAGA)n Simple_repeat Simple_repeat 1 33 0 8 1088 668 148 11 22 chr3 65998629 65998809 -93600974 + GA-rich Low_complexity Low_complexity 2 179 0 8 1088 315 235 12 0 chr3 66000000 66000085 -93599698 + MLT1A1 LTR MaLR 307 392 -16 1 1088 1072 255 49 18 chr3 66000069 66000410 -93599373 - MTE2b LTR MaLR -12 367 22 2 1088 1164 189 62 117 chr3 66001432 66001792 -93597991 + MT2A LTR ERVL 2 468 -133 3 1088 478 311 62 14 chr3 66003440 66003649 -93596134 - MIR SINE MIR -12 250 32 4 1088 404 37 19 0 chr3 66004169 66004223 -93595560 + (TA)n Simple_repeat Simple_repeat 1 55 0 5 1088 775 247 99 68 chr3 66004429 66004778 -93595005 + MTD LTR MaLR 48 404 -15 6 1088 1194 68 0 0 chr3 66005442 66005590 -93594193 - B1_Mus1 SINE Alu 0 148 1 7 1088 248 289 78 0 chr3 66007363 66007453 -93592330 + MLT1J LTR MaLR 229 325 -187 8 1088 706 279 89 10 chr3 66007493 66007797 -93591986 + MER2 DNA MER2_type 12 339 -6 9 1088 534 67 0 0 chr3 66008084 66008159 -93591624 + (TATG)n Simple_repeat Simple_repeat 2 76 0 1 1088 477 0 0 0 chr3 66008160 66008213 -93591570 + (TCTA)n Simple_repeat Simple_repeat 4 56 0 1 1088 505 274 24 8 chr3 66008256 66008381 -93591402 - B3 SINE B2 -85 131 5 1 1088 180 246 0 0 chr3 66009130 66009199 -93590584 + GA-rich Low_complexity Low_complexity 4 72 0 1 1088 1175 102 6 0 chr3 66009199 66009376 -93590407 + (GGGA)n Simple_repeat Simple_repeat 2 179 0 1 1088 318 279 30 35 chr3 66009692 66009794 -93589989 - PB1D7 SINE Alu -6 114 15 1 1088 303 28 0 0 chr3 66010437 66010473 -93589310 + (TTCA)n Simple_repeat Simple_repeat 1 36 0 1 1088 216 312 0 38 chr3 66010864 66010944 -93588839 + GA-rich Low_complexity Low_complexity 3 79 0 1 1088 186 43 0 0 chr3 66012648 66012671 -93587112 + (CGTG)n Simple_repeat Simple_repeat 1 23 0 1 1088 279 0 0 0 chr3 66013583 66013614 -93586169 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1 1088 1334 89 17 0 chr3 66013614 66013794 -93585989 - B2_Mm2 SINE B2 -11 184 2 2 1088 294 29 0 0 chr3 66013804 66013839 -93585944 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 2 1088 366 23 0 0 chr3 66013932 66013975 -93585808 + (CCAA)n Simple_repeat Simple_repeat 4 46 0 2 1088 232 306 16 0 chr3 66014219 66014281 -93585502 - ORR1E LTR MaLR -269 90 28 2 1088 238 147 26 26 chr3 66014816 66014893 -93584890 + (TCTCTG)n Simple_repeat Simple_repeat 2 78 0 2 1088 242 313 60 20 chr3 66015387 66015537 -93584246 + MIRb SINE MIR 44 199 -69 2 1088 240 35 0 0 chr3 66016354 66016383 -93583400 + (CAAA)n Simple_repeat Simple_repeat 3 31 0 2 1088 315 260 94 39 chr3 66016437 66016565 -93583218 + MLT1D LTR MaLR 113 247 -258 2 1088 322 235 23 34 chr3 66016591 66016679 -93583104 + MLT1D LTR MaLR 302 388 -117 2 1088 4446 33 0 0 chr3 66016699 66017208 -93582575 - L1Md_F2 LINE L1 -12 6570 6062 2 1088 378 61 0 0 chr3 66017818 66017867 -93581916 + (TTCA)n Simple_repeat Simple_repeat 3 51 0 2 1088 892 310 14 25 chr3 66017938 66018219 -93581564 - B4 SINE B4 -2 290 13 3 1088 526 309 11 0 chr3 66018883 66019061 -93580722 + (CA)n Simple_repeat Simple_repeat 1 180 0 3 1088 408 97 0 0 chr3 66019130 66019192 -93580591 + (CA)n Simple_repeat Simple_repeat 2 63 0 3 1088 278 206 53 40 chr3 66020309 66020385 -93579398 - ID4_ SINE ID -3 80 4 3 1088 443 295 60 15 chr3 66020719 66020853 -93578930 + B1F1 SINE Alu 1 140 -9 3 1088 647 221 71 9 chr3 66020895 66021077 -93578706 + B3 SINE B2 9 198 0 3 1088 2453 111 17 0 chr3 66022027 66022378 -93577405 + Lx5 LINE L1 5587 5943 -1107 3 1088 504 305 96 0 chr3 66022412 66022599 -93577184 - B4 SINE B4 -63 229 25 3 1088 369 0 0 0 chr3 66023210 66023251 -93576532 + (CA)n Simple_repeat Simple_repeat 2 42 0 3 1088 272 350 73 0 chr3 66027625 66027762 -93572021 + MIR SINE MIR 116 262 0 3 1088 427 302 47 8 chr3 66027796 66027923 -93571860 + ID_B1 SINE B4 82 213 -11 4 1088 413 260 0 39 chr3 66030080 66030208 -93569575 + RMER30 DNA MER1_type 3 125 -77 4 1088 38785 30 1 0 chr3 66030208 66037265 -93562518 - L1Md_T LINE L1 -2 6583 1 4 1088 282 258 226 0 chr3 66039119 66039212 -93560571 + MER81 DNA AcHobo 1 114 0 4 1088 3541 91 6 6 chr3 66040030 66040519 -93559264 + L1_Mus3 LINE L1 6150 6638 0 4 1088 486 289 36 102 chr3 66041133 66041437 -93558346 - B4A SINE B4 -8 284 1 4 1088 267 313 89 6 chr3 66042790 66042970 -93556813 - L1M5 LINE L1 -1495 4651 4457 4 1088 21 36 0 0 chr3 66043005 66043033 -93556750 + AT_rich Low_complexity Low_complexity 1 28 0 4 1088 233 350 30 0 chr3 66043081 66043181 -93556602 - L1M5 LINE L1 -2009 4137 4035 4 1088 287 315 41 20 chr3 66043511 66043657 -93556126 - L1M5 LINE L1 -2419 3727 3579 4 1088 219 281 6 28 chr3 66045587 66045763 -93554020 + CT-rich Low_complexity Low_complexity 2 173 0 4 1088 206 105 0 26 chr3 66047005 66047044 -93552739 + (TGG)n Simple_repeat Simple_repeat 1 38 0 4 1088 814 203 7 7 chr3 66047907 66048056 -93551727 - B1_Mur1 SINE Alu 0 149 1 5 1088 1062 139 23 0 chr3 66049206 66049379 -93550404 - B2_Mm2 SINE B2 -17 178 2 5 1088 3057 73 5 38 chr3 66049860 66050286 -93549497 + L1Md_F2 LINE L1 6164 6575 -7 5 1088 1066 90 12 12 chr3 66050310 66050479 -93549304 + (CATATA)n Simple_repeat Simple_repeat 2 170 0 5 1088 835 319 0 0 chr3 66050727 66050943 -93548840 + B4A SINE B4 73 288 -4 5 1088 211 268 18 0 chr3 66050946 66051002 -93548781 + (CA)n Simple_repeat Simple_repeat 2 58 0 5 1088 211 353 86 8 chr3 66051060 66051177 -93548606 + MIRm SINE MIR 1 126 -150 5 1088 349 354 72 19 chr3 66051461 66051726 -93548057 + MLT1J LTR MaLR 44 322 -190 5 1088 298 282 106 44 chr3 66052260 66052534 -93547249 + L1M5 LINE L1 5112 5402 -744 5 1088 414 176 0 0 chr3 66053059 66053144 -93546639 + GA-rich Low_complexity Low_complexity 4 88 0 5 1088 492 136 0 0 chr3 66053480 66053568 -93546215 + (TTCC)n Simple_repeat Simple_repeat 1 88 0 6 1088 1432 95 16 0 chr3 66053568 66053758 -93546025 - B2_Mm2 SINE B2 -1 194 2 6 1088 255 61 0 0 chr3 66053932 66053965 -93545818 + (CAAA)n Simple_repeat Simple_repeat 4 36 0 6 1088 605 240 16 0 chr3 66054952 66055077 -93544706 - B1_Mur2 SINE Alu -10 139 13 6 1088 257 197 88 112 chr3 66055008 66055088 -93544695 - MT2B LTR ERVL -365 236 159 6 1088 276 283 0 71 chr3 66056517 66056616 -93543167 - L2a LINE L2 -2 3424 3333 6 1088 518 292 167 32 chr3 66056691 66056942 -93542841 + B4A SINE B4 4 288 -4 6 1088 372 313 30 30 chr3 66057073 66057208 -93542575 - MIR SINE MIR -71 191 57 6 1088 243 61 0 0 chr3 66057606 66057639 -93542144 + (A)n Simple_repeat Simple_repeat 1 33 0 6 1088 280 0 70 35 chr3 66057639 66057696 -93542087 + (CAA)n Simple_repeat Simple_repeat 2 60 0 6 1088 504 269 46 35 chr3 66058357 66058554 -93541229 + B4A SINE B4 3 274 -18 7 1088 722 298 61 29 chr3 66059773 66060053 -93539730 - L1M5 LINE L1 -480 5644 5356 7 1089 591 280 78 20 chr3 66060336 66060540 -93539243 - B3 SINE B2 0 216 1 7 1089 800 240 11 22 chr3 66060785 66060968 -93538815 - B3 SINE B2 -6 210 30 7 1089 274 267 147 70 chr3 66061394 66061523 -93538260 + B1F2 SINE Alu 1 139 -10 7 1089 252 0 0 0 chr3 66061917 66061945 -93537838 + (TAAA)n Simple_repeat Simple_repeat 3 30 0 7 1089 756 152 0 0 chr3 66062365 66062497 -93537286 + CT-rich Low_complexity Low_complexity 4 135 0 7 1089 1533 239 97 66 chr3 66062545 66062670 -93537113 - Lx8 LINE L1 -6 7467 7342 7 1089 949 245 14 14 chr3 66062670 66062885 -93536898 + B3 SINE B2 2 216 0 7 1089 1533 239 97 66 chr3 66062885 66063004 -93536779 - Lx8 LINE L1 -132 7341 7215 7 1089 423 0 0 0 chr3 66063004 66063051 -93536732 + (TC)n Simple_repeat Simple_repeat 1 47 0 7 1089 1533 239 97 66 chr3 66063051 66063321 -93536462 - Lx8 LINE L1 -259 7214 6937 7 1089 1383 237 14 166 chr3 66064774 66064868 -93534915 - MTE2b LTR MaLR 0 379 285 8 1089 1310 14 0 0 chr3 66064868 66065007 -93534776 + B1_Mm SINE Alu 1 139 -8 8 1089 1383 237 14 166 chr3 66065007 66065357 -93534426 - MTE2b LTR MaLR -95 284 3 8 1089 408 143 0 0 chr3 66065474 66065544 -93534239 + (TGG)n Simple_repeat Simple_repeat 1 70 0 8 1089 603 0 0 0 chr3 66068138 66068205 -93531578 + (TAGA)n Simple_repeat Simple_repeat 2 68 0 8 1089 281 397 41 27 chr3 66069167 66069387 -93530396 - MamRep137 DNA TcMar? -29 415 193 8 1089 5881 201 60 15 chr3 66069506 66069554 -93530229 + L1_Mur3 LINE L1 55 96 -7632 8 1089 3487 55 2 0 chr3 66069554 66069953 -93529830 + MTB LTR MaLR 1 400 0 8 1089 5881 196 52 24 chr3 66069953 66071207 -93528576 + L1_Mur3 LINE L1 97 1401 -4479 8 1089 8785 34 4 3 chr3 66071207 66072196 -93527587 + L1Md_F2 LINE L1 5587 6576 -6 8 1089 2476 170 12 65 chr3 66072196 66072552 -93527231 + L1_Mur3 LINE L1 1402 1738 -4142 8 1089 588 208 8 24 chr3 66072552 66072675 -93527108 + MT2A LTR ERVL 1 121 -412 8 1089 230 309 13 57 chr3 66072711 66072798 -93526985 + MT2A LTR ERVL 100 180 -353 8 1089 37845 23 2 7 chr3 66072798 66078043 -93521740 + L1Md_A LINE L1 374 5586 -297 8 1089 9345 17 0 0 chr3 66078043 66079039 -93520744 + L1Md_A LINE L1 5587 6582 0 8 1089 342 267 80 99 chr3 66079039 66079251 -93520532 + MT2A LTR ERVL 321 528 -56 8 1089 34632 64 15 6 chr3 66079256 66084424 -93515359 + L1Md_F3 LINE L1 418 5586 -297 9 1089 8530 47 5 2 chr3 66084425 66085419 -93514364 + L1Md_F3 LINE L1 5588 6584 0 9 1089 453 169 0 0 chr3 66085463 66085546 -93514237 + (TCTG)n Simple_repeat Simple_repeat 2 84 0 9 1089 240 150 0 0 chr3 66085579 66085619 -93514164 + MT2A LTR ERVL 544 583 -1 8 1089 12716 156 32 20 chr3 66085631 66086338 -93513445 + Lx6 LINE L1 2434 3129 -2751 9 1089 192 77 0 0 chr3 66086338 66086364 -93513419 + (CAAG)n Simple_repeat Simple_repeat 2 27 0 9 1089 12716 156 32 20 chr3 66086364 66087828 -93511955 + Lx6 LINE L1 3130 4624 -1256 9 1089 234 0 0 0 chr3 66087828 66087854 -93511929 + (CA)n Simple_repeat Simple_repeat 2 27 0 9 1089 12716 156 32 20 chr3 66087854 66088027 -93511756 + Lx6 LINE L1 4625 4808 -1072 9 1089 8617 22 0 1 chr3 66088031 66089384 -93510399 - L1Md_A LINE L1 0 6582 5231 9 1089 4216 208 89 47 chr3 66089382 66091056 -93508727 + Lx6 LINE L1 4796 6519 -941 9 1089 687 277 0 12 chr3 66091055 66091223 -93508560 - Lx6 LINE L1 -363 7097 6932 9 1089 481 236 45 0 chr3 66091222 66091332 -93508451 + Lx6 LINE L1 6490 6604 -856 9 1089 942 144 20 0 chr3 66091336 66091489 -93508294 + URR1B DNA MER1_type 70 225 0 9 1089 3093 231 68 58 chr3 66091489 66091658 -93508125 + Lx6 LINE L1 6573 6746 -714 9 1089 4297 86 37 35 chr3 66091658 66092251 -93507532 + L1_Mus2 LINE L1 5972 6565 -1 9 1089 3093 231 68 58 chr3 66092251 66092274 -93507509 + Lx6 LINE L1 6747 6761 -699 9 1089 728 197 8 38 chr3 66092274 66092406 -93507377 + B1_Mus2 SINE Alu 1 128 -19 9 1089 3093 231 68 58 chr3 66092406 66092554 -93507229 + Lx6 LINE L1 6762 6895 -565 9 1089 312 70 0 0 chr3 66092554 66092597 -93507186 + (CA)n Simple_repeat Simple_repeat 1 43 0 1 1089 3093 231 68 58 chr3 66092597 66093132 -93506651 + Lx6 LINE L1 6896 7458 -2 9 1089 255 311 132 0 chr3 66093197 66093303 -93506480 - MIR SINE MIR -49 213 94 1 1089 578 151 113 0 chr3 66093421 66093527 -93506256 + URR1A DNA MER1_type 1 118 -108 1 1089 1471 251 10 10 chr3 66094174 66094495 -93505288 + MTE2b LTR MaLR 1 313 -57 1 1089 195 42 0 0 chr3 66096158 66096182 -93503601 + (A)n Simple_repeat Simple_repeat 1 24 0 1 1089 858 130 270 6 chr3 66096891 66097069 -93502714 - URR1B DNA MER1_type 0 225 1 1 1089 396 0 0 0 chr3 66097164 66097208 -93502575 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 1089 629 227 0 62 chr3 66097224 66097376 -93502407 - B1_Mur1 SINE Alu -9 141 2 1 1089 31 58 0 0 chr3 66097397 66097449 -93502334 + AT_rich Low_complexity Low_complexity 1 52 0 1 1089 417 225 0 0 chr3 66098099 66098170 -93501613 - ID4_ SINE ID -10 73 3 1 1089 444 215 42 40 chr3 66098180 66098328 -93501455 - B1F SINE Alu -2 148 4 1 1089 21 36 0 0 chr3 66099931 66099959 -93499824 + AT_rich Low_complexity Low_complexity 1 28 0 1 1089 513 44 0 0 chr3 66101982 66102050 -93497733 + (TG)n Simple_repeat Simple_repeat 2 69 0 1 1089 583 281 15 0 chr3 66102625 66102760 -93497023 - B1F2 SINE Alu -12 137 1 1 1089 342 0 0 0 chr3 66102885 66102923 -93496860 + (T)n Simple_repeat Simple_repeat 1 38 0 1 1089 454 314 109 15 chr3 66103451 66103684 -93496099 + MLT1E2 LTR MaLR 294 533 -121 1 1089 362 267 56 0 chr3 66103683 66103773 -93496010 - RMER30 DNA MER1_type -28 174 80 1 1089 705 300 19 24 chr3 66103845 66103891 -93495892 - B3 SINE B2 -10 206 164 1 1089 267 103 0 0 chr3 66103891 66103930 -93495853 + (TG)n Simple_repeat Simple_repeat 1 39 0 1 1089 756 261 1 2 chr3 66103930 66104088 -93495695 - B3A SINE B2 -53 163 3 1 1089 304 237 86 0 chr3 66104103 66104196 -93495587 - RMER30 DNA MER1_type -101 101 1 1 1089 596 120 10 0 chr3 66104663 66104763 -93495020 + (TC)n Simple_repeat Simple_repeat 2 102 0 1 1089 645 329 68 18 chr3 66104842 66105062 -93494721 + B4 SINE B4 58 288 -4 1 1089 219 289 23 46 chr3 66105722 66105809 -93493974 + L2c LINE L2 3272 3356 -31 1 1089 355 305 43 66 chr3 66106707 66106918 -93492865 + L1ME3B LINE L1 5854 6059 -181 1 1089 249 0 0 68 chr3 66107187 66107231 -93492552 + (CAAA)n Simple_repeat Simple_repeat 2 42 0 1 1089 2056 305 103 55 chr3 66107285 66109934 -93489849 + L1M2 LINE L1 1566 4353 -2492 1 1089 714 89 16 16 chr3 66109960 66110086 -93489697 + (CCA)n Simple_repeat Simple_repeat 3 128 0 1 1089 3391 60 2 12 chr3 66110086 66110490 -93489293 + MTB LTR MaLR 1 400 0 1 1089 246 219 0 0 chr3 66110493 66110557 -93489226 + (CCA)n Simple_repeat Simple_repeat 1 64 0 1 1089 229 213 12 96 chr3 66110557 66110640 -93489143 + L1M4 LINE L1 3681 3756 -2390 1 1089 438 263 171 46 chr3 66110670 66110909 -93488874 - L1M2 LINE L1 -2187 3956 3688 1 1089 885 219 63 14 chr3 66110985 66111207 -93488576 + L1MA4 LINE L1 5695 5927 -373 1 1089 270 243 12 0 chr3 66111429 66111512 -93488271 + L1M4 LINE L1 3343 3428 -2718 1 1089 2546 254 91 22 chr3 66111522 66112323 -93487460 + Lx9 LINE L1 6764 7619 -25 1 1089 1087 69 0 14 chr3 66112329 66112343 -93487440 - B1_Mus2 SINE Alu 0 147 135 1 1089 261 0 0 0 chr3 66112343 66112372 -93487411 + (TTTTG)n Simple_repeat Simple_repeat 1 29 0 1 1089 1087 69 0 14 chr3 66112372 66112504 -93487279 - B1_Mus2 SINE Alu -13 134 3 1 1089 24 0 0 0 chr3 66112515 66112539 -93487244 + AT_rich Low_complexity Low_complexity 1 24 0 1 1089 336 342 137 21 chr3 66112928 66113161 -93486622 + L1M4 LINE L1 4887 5146 -1000 1 1089 317 275 99 28 chr3 66113132 66113274 -93486509 + L1MD LINE L1 5327 5478 -881 1 1089 259 215 82 27 chr3 66113354 66113464 -93486319 + L1M4 LINE L1 5484 5599 -565 1 1089 233 291 55 0 chr3 66113600 66113710 -93486073 + L1M4 LINE L1 5773 5888 -291 1 1089 318 307 123 13 chr3 66113985 66114140 -93485643 + L1M5 LINE L1 5474 5645 -479 1 1089 738 251 79 18 chr3 66114223 66114450 -93485333 + ORR1D2 LTR MaLR 126 366 -4 1 1089 362 375 47 17 chr3 66114473 66114709 -93485074 + MIR SINE MIR 15 257 -5 1 1089 328 380 62 45 chr3 66114724 66115033 -93484750 - L1M5 LINE L1 -540 5700 5387 1 1089 739 152 7 7 chr3 66115075 66115221 -93484562 + CT-rich Low_complexity Low_complexity 1 146 0 1 1089 988 126 14 0 chr3 66115226 66115369 -93484414 - B1_Mur4 SINE Alu -5 145 1 1 1089 2388 89 76 33 chr3 66115512 66115906 -93483877 + IAPLTR2a LTR ERVK 1 411 0 1 1089 432 132 77 185 chr3 66115907 66116037 -93483746 + IAPEz-int LTR ERVK 9 124 -6357 1 1089 230 273 0 0 chr3 66116037 66116081 -93483702 + RLTR27 LTR ERVK 232 275 -34 1 1089 225 321 0 0 chr3 66116109 66116162 -93483621 + RLTR27 LTR ERVK 223 275 -34 1 1089 3264 58 22 16 chr3 66116162 66116728 -93483055 + IAPEz-int LTR ERVK 168 662 -5819 1 1089 2159 58 0 0 chr3 66116728 66117006 -93482777 + IAPEz-int LTR ERVK 1359 1636 -4845 1 1089 5634 50 5 12 chr3 66117005 66117754 -93482029 + IAPEz-int LTR ERVK 5736 6479 -2 1 1089 2378 92 76 33 chr3 66117756 66118150 -93481633 + IAPLTR2a LTR ERVK 1 411 0 1 1089 430 347 47 20 chr3 66118150 66118300 -93481483 + RSINE1 SINE B4 6 159 -6 1 1089 309 26 0 0 chr3 66118302 66118340 -93481443 + (CA)n Simple_repeat Simple_repeat 1 38 0 1 1089 2102 163 24 16 chr3 66118567 66118942 -93480841 - ORR1C1 LTR MaLR 0 378 1 1 1089 358 316 85 24 chr3 66119104 66119315 -93480468 + MER121 Unknown Unknown 5 228 -184 1 1089 324 48 0 0 chr3 66119897 66119939 -93479844 + (CA)n Simple_repeat Simple_repeat 2 43 0 1 1089 869 287 37 55 chr3 66120248 66120521 -93479262 + B4 SINE B4 3 270 -22 1 1089 493 203 0 17 chr3 66120710 66120830 -93478953 + Lx9 LINE L1 7520 7637 -7 1 1089 390 371 124 41 chr3 66121619 66122375 -93477408 - L1ME3B LINE L1 -9 6231 5413 1 1089 369 43 0 0 chr3 66122377 66122424 -93477359 + (TCTG)n Simple_repeat Simple_repeat 2 48 0 1 1089 234 0 0 0 chr3 66122533 66122559 -93477224 + (TCTA)n Simple_repeat Simple_repeat 1 26 0 1 1089 1016 141 6 0 chr3 66122559 66122736 -93477047 + (TCCA)n Simple_repeat Simple_repeat 3 180 0 1 1089 981 167 0 12 chr3 66122736 66122900 -93476883 - B2_Mm2 SINE B2 -33 162 1 1 1089 876 274 26 22 chr3 66122900 66123127 -93476656 - B4A SINE B4 -64 228 1 1 1089 1170 260 74 20 chr3 66123171 66123524 -93476259 + MTEa LTR MaLR 1 372 -7 1 1089 242 359 185 35 chr3 66123769 66123942 -93475841 + RMER5 LTR ERV1 10 208 -326 1 1089 8086 138 97 5 chr3 66123943 66125455 -93474328 - L1_Mur2 LINE L1 -616 5261 3612 1 1089 6950 101 31 3 chr3 66125450 66126684 -93473099 + Lx LINE L1 5388 6654 0 1 1089 366 305 146 45 chr3 66126974 66127310 -93472473 - L1ME3B LINE L1 -1312 4834 4465 1 1089 366 358 117 4 chr3 66127420 66127667 -93472116 + L1ME3B LINE L1 5607 5881 -359 1 1089 656 257 106 10 chr3 66127667 66127875 -93471908 + B4 SINE B4 2 229 -63 1 1089 796 149 15 7 chr3 66127877 66128012 -93471771 + B1_Mur3 SINE Alu 1 136 -13 1 1089 398 0 58 0 chr3 66128012 66128064 -93471719 + (CAAAA)n Simple_repeat Simple_repeat 1 55 0 1 1089 210 245 0 0 chr3 66128152 66128205 -93471578 + (CAAA)n Simple_repeat Simple_repeat 4 56 0 1 1089 1066 146 0 0 chr3 66128639 66128797 -93470986 + B2_Mm2 SINE B2 1 158 -37 1 1089 216 0 0 0 chr3 66128798 66128822 -93470961 + (CAAT)n Simple_repeat Simple_repeat 2 25 0 1 1089 423 0 0 0 chr3 66130837 66130884 -93468899 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 1089 2665 189 166 25 chr3 66131327 66132061 -93467722 + Lx7 LINE L1 6859 7696 0 1 1089 266 345 54 18 chr3 66132797 66132909 -93466874 - MER2B DNA MER2_type -41 295 180 1 1089 381 186 0 0 chr3 66132959 66133088 -93466695 + (TCTG)n Simple_repeat Simple_repeat 4 132 0 1 1089 705 289 36 26 chr3 66133509 66133759 -93466024 - ORR1E LTR MaLR -141 243 1 1 1089 1904 102 19 125 chr3 66133829 66134197 -93465586 + ORR1A4 LTR MaLR 1 329 0 1 1089 405 0 0 0 chr3 66134541 66134586 -93465197 + (GA)n Simple_repeat Simple_repeat 2 46 0 1 1089 183 376 104 28 chr3 66135533 66135744 -93464039 - MIRb SINE MIR -40 228 2 1 1089 180 0 0 0 chr3 66137097 66137117 -93462666 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 1 1089 400 358 69 57 chr3 66137396 66137817 -93461966 + L2 LINE L2 2535 2960 -459 1 1089 6681 97 21 13 chr3 66137969 66138974 -93460809 - Lx LINE L1 0 6654 5642 1 1089 189 250 49 16 chr3 66139572 66139633 -93460150 + MIRb SINE MIR 139 201 -67 1 1089 203 179 0 0 chr3 66139685 66139724 -93460059 + (TTATG)n Simple_repeat Simple_repeat 3 41 0 1 1089 476 346 136 19 chr3 66139749 66140176 -93459607 - MLT1G3 LTR MaLR -8 587 46 1 1089 367 258 78 64 chr3 66140890 66141031 -93458752 + L1MEc LINE L1 717 859 -5541 1 1089 302 318 27 33 chr3 66141077 66141378 -93458405 + L1MEc LINE L1 4893 5191 -1128 1 1089 281 228 0 0 chr3 66141397 66141454 -93458329 - B3 SINE B2 -6 210 154 1 1089 2213 166 3 5 chr3 66141971 66142346 -93457437 + ORR1D1 LTR MaLR 1 374 0 1 1089 399 250 47 19 chr3 66142364 66142470 -93457313 + RSINE1 SINE B4 16 124 -41 1 1089 26 50 0 0 chr3 66142970 66143010 -93456773 + AT_rich Low_complexity Low_complexity 1 40 0 1 1089 203 274 0 0 chr3 66143215 66143266 -93456517 + CT-rich Low_complexity Low_complexity 3 53 0 1 1089 243 196 0 80 chr3 66144639 66144689 -93455094 - RSINE1 SINE B4 -109 56 11 1 1089 267 339 43 9 chr3 66145059 66145175 -93454608 + L2c LINE L2 3267 3386 -1 1 1089 415 351 88 56 chr3 66145543 66145863 -93453920 - MLT1D LTR MaLR -114 391 62 1 1089 326 23 23 0 chr3 66145951 66145994 -93453789 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 1089 483 329 28 0 chr3 66145995 66146138 -93453645 - RSINE1 SINE B4 -16 149 3 1 1089 240 315 0 0 chr3 66146154 66146227 -93453556 + (TG)n Simple_repeat Simple_repeat 2 74 0 1 1089 543 69 0 0 chr3 66146848 66146920 -93452863 + (TCCTG)n Simple_repeat Simple_repeat 2 73 0 1 1089 196 209 23 0 chr3 66147418 66147461 -93452322 + MIRc SINE MIR 90 133 -135 1 1089 1876 204 66 40 chr3 66147550 66148103 -93451680 - RMER6C LTR ERVK 0 690 6 1 1089 242 313 133 7 chr3 66149247 66149382 -93450401 + MIRb SINE MIR 104 255 -13 1 1089 228 295 60 35 chr3 66149433 66149549 -93450234 - MER5A1 DNA MER1_type 0 166 48 2 1089 206 285 15 0 chr3 66150200 66150330 -93449453 + (CATA)n Simple_repeat Simple_repeat 4 135 0 2 1089 671 288 146 22 chr3 66150338 66151038 -93448745 + L1MB5 LINE L1 3268 4026 -2114 2 1089 2743 122 30 0 chr3 66151065 66151491 -93448292 - BGLII_B LTR ERVK 0 441 3 2 1089 6759 162 52 9 chr3 66151493 66152896 -93446887 - MYSERV16_I-int LTR ERVK 0 2326 863 2 1089 338 259 60 54 chr3 66152905 66153203 -93446580 + L1MB5 LINE L1 4065 4369 -1771 2 1089 245 210 16 0 chr3 66153467 66153529 -93446254 + Lx8 LINE L1 7409 7471 -2 2 1089 452 203 61 0 chr3 66153556 66153704 -93446079 + L1MD LINE L1 5593 5749 -493 2 1089 1235 248 147 64 chr3 66153716 66154198 -93445585 + L1MB5 LINE L1 4456 4997 -1149 2 1089 766 252 215 32 chr3 66154198 66154444 -93445339 + B4A SINE B4 2 292 0 2 1089 1235 248 147 64 chr3 66154444 66154677 -93445106 + L1MB5 LINE L1 4998 5230 -916 2 1089 193 0 94 0 chr3 66154760 66154792 -93444991 + (TAAAAA)n Simple_repeat Simple_repeat 3 37 0 2 1089 800 317 64 24 chr3 66154933 66155509 -93444274 + L1MB5 LINE L1 5569 6167 -7 2 1089 314 326 63 14 chr3 66155509 66155652 -93444131 - L1ME1 LINE L1 -6 6173 6024 2 1089 288 285 107 81 chr3 66155801 66156369 -93443414 - L1ME1 LINE L1 -309 5855 5273 2 1089 593 185 7 22 chr3 66156374 66156512 -93443271 - Lx7 LINE L1 0 7696 7561 2 1089 1925 215 93 33 chr3 66156525 66157097 -93442686 + L1_Mur3 LINE L1 295 900 -6828 2 1089 18771 165 47 48 chr3 66157119 66158271 -93441512 + L1_Mur3 LINE L1 983 2097 -3783 2 1089 1114 57 0 41 chr3 66158271 66158418 -93441365 + B1_Mm SINE Alu 1 141 -6 2 1089 198 0 0 0 chr3 66158420 66158442 -93441341 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 2 1089 18771 160 50 59 chr3 66158442 66158829 -93440954 + L1_Mur3 LINE L1 2098 2459 -3421 2 1089 248 0 31 0 chr3 66158829 66158861 -93440922 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 2 1089 18771 160 50 59 chr3 66158861 66159723 -93440060 + L1_Mur3 LINE L1 2460 3328 -2552 2 1089 1068 87 0 0 chr3 66159723 66159861 -93439922 + B1_Mus1 SINE Alu 1 138 -10 2 1089 253 0 54 0 chr3 66159861 66159898 -93439885 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 2 1089 18771 160 50 59 chr3 66159898 66162106 -93437677 + L1_Mur3 LINE L1 3329 5566 -314 2 1089 10291 170 186 55 chr3 66162100 66162275 -93437508 + L1_Mur3 LINE L1 1884 2067 -3813 2 1089 414 0 0 0 chr3 66162275 66162321 -93437462 + (CCA)n Simple_repeat Simple_repeat 2 47 0 2 1089 10291 170 186 55 chr3 66162321 66163642 -93436141 + L1_Mur3 LINE L1 2068 3328 -2552 2 1089 1205 41 7 0 chr3 66163642 66163788 -93435995 + B1_Mus1 SINE Alu 2 148 0 2 1089 10291 170 186 55 chr3 66163788 66165450 -93434333 + L1_Mur3 LINE L1 3329 5455 -425 2 1089 414 103 25 13 chr3 66165706 66165785 -93433998 + (TA)n Simple_repeat Simple_repeat 2 81 0 2 1089 231 204 0 18 chr3 66165860 66165915 -93433868 + (CA)n Simple_repeat Simple_repeat 2 55 0 2 1089 576 314 14 14 chr3 66165972 66166182 -93433601 - B3 SINE B2 -6 210 1 2 1089 1437 188 147 6 chr3 66166319 66166491 -93433292 - ORR1D1 LTR MaLR 0 374 171 2 1089 540 0 0 0 chr3 66166491 66166551 -93433232 + (GA)n Simple_repeat Simple_repeat 1 60 0 2 1089 1437 188 147 6 chr3 66166551 66166705 -93433078 - ORR1D1 LTR MaLR -204 170 2 2 1089 567 315 88 55 chr3 66166922 66167265 -93432518 + ORR1E LTR MaLR 2 355 -4 2 1089 269 327 0 9 chr3 66167283 66167388 -93432395 + MER53 DNA hAT 3 106 -87 2 1089 542 232 123 27 chr3 66167598 66167744 -93432039 - RSINE1 SINE B4 -2 163 4 2 1089 1073 270 42 26 chr3 66168119 66168431 -93431352 + ORR1E LTR MaLR 43 359 0 2 1089 689 277 59 16 chr3 66170287 66170474 -93429309 + B3 SINE B2 1 195 -21 2 1089 930 119 0 0 chr3 66170476 66170755 -93429028 + (CA)n Simple_repeat Simple_repeat 1 279 0 2 1089 190 121 29 43 chr3 66170755 66170824 -93428959 + (TA)n Simple_repeat Simple_repeat 2 69 0 2 1089 246 241 52 0 chr3 66170914 66170972 -93428811 - ID4 SINE ID 0 83 23 2 1089 299 294 18 64 chr3 66170989 66171098 -93428685 - PB1 SINE Alu -2 125 22 2 1089 522 279 0 16 chr3 66174008 66174132 -93425651 + ID_B1 SINE B4 96 217 -7 2 1089 312 298 58 117 chr3 66174677 66174848 -93424935 + RSINE1 SINE B4 5 165 0 2 1089 503 230 8 34 chr3 66174971 66175088 -93424695 + PB1D7 SINE Alu 5 118 -2 2 1089 394 291 17 8 chr3 66175128 66175246 -93424537 + RSINE1 SINE B4 2 120 -45 2 1089 1189 78 0 0 chr3 66175246 66175399 -93424384 - L1_Mus4 LINE L1 -395 6241 6089 2 1089 1165 134 0 44 chr3 66175400 66175626 -93424157 + Lx LINE L1 6438 6653 -1 2 1089 999 124 0 0 chr3 66175686 66175863 -93423920 + (CA)n Simple_repeat Simple_repeat 2 178 0 2 1089 552 277 19 25 chr3 66176013 66176172 -93423611 + ID_B1 SINE B4 64 221 -3 2 1089 326 204 0 10 chr3 66177413 66177512 -93422271 + (TA)n Simple_repeat Simple_repeat 2 99 0 2 1089 396 0 0 0 chr3 66178950 66178994 -93420789 + (TG)n Simple_repeat Simple_repeat 2 45 0 2 1089 270 284 23 108 chr3 66180214 66180344 -93419439 + PB1D10 SINE Alu 3 121 -28 2 1089 234 0 0 0 chr3 66182360 66182386 -93417397 + (ATTG)n Simple_repeat Simple_repeat 3 28 0 2 1089 233 318 16 0 chr3 66182395 66182458 -93417325 - ID4_ SINE ID -19 64 1 2 1089 565 314 64 55 chr3 66182898 66183225 -93416558 - Tigger13a DNA MER2_type -135 636 307 2 1089 574 240 158 0 chr3 66183334 66183480 -93416303 + ID_B1 SINE B4 2 170 -54 2 1089 534 277 152 69 chr3 66183632 66183935 -93415848 + MLT1B LTR MaLR 61 388 -2 2 1089 858 254 39 109 chr3 66184254 66184679 -93415104 - MTE2a LTR MaLR -14 405 1 2 1089 558 43 0 0 chr3 66184813 66184882 -93414901 + (GA)n Simple_repeat Simple_repeat 1 69 0 2 1089 307 333 109 15 chr3 66185952 66186153 -93413630 - MamGypLTR1c LTR Gypsy 0 803 584 2 1089 395 162 0 39 chr3 66187945 66188029 -93411754 + GA-rich Low_complexity Low_complexity 2 82 0 2 1089 1368 67 0 0 chr3 66188029 66188209 -93411574 + (GGAGAA)n Simple_repeat Simple_repeat 1 180 0 2 1089 395 162 0 39 chr3 66188209 66188227 -93411556 + polypurine Low_complexity Low_complexity 83 100 0 2 1089 969 99 7 0 chr3 66188459 66188600 -93411183 - B1_Mus1 SINE Alu -1 147 6 2 1089 185 304 0 0 chr3 66188952 66189011 -93410772 - MIRm SINE MIR -55 153 95 2 1089 800 20 0 10 chr3 66189939 66190038 -93409745 + (TCTCC)n Simple_repeat Simple_repeat 4 101 0 2 1089 354 178 0 0 chr3 66190041 66190131 -93409652 + (TG)n Simple_repeat Simple_repeat 1 90 0 2 1089 468 0 0 0 chr3 66190150 66190202 -93409581 + (TC)n Simple_repeat Simple_repeat 2 53 0 2 1089 366 23 0 0 chr3 66190202 66190244 -93409539 + (TG)n Simple_repeat Simple_repeat 2 44 0 2 1089 498 253 192 20 chr3 66190252 66190450 -93409333 - B4A SINE B4 -52 240 9 2 1089 228 280 57 33 chr3 66190577 66190699 -93409084 - Lx8 LINE L1 0 7473 7349 2 1089 3256 257 69 29 chr3 66190738 66190963 -93408820 - Lx8 LINE L1 -205 7268 7024 2 1089 1174 122 15 31 chr3 66190963 66191158 -93408625 - B2_Mm2 SINE B2 -2 193 2 2 136 3256 257 69 29 chr3 66191158 66191914 -93407869 - Lx8 LINE L1 -450 7023 6247 2 1090 1422 262 28 3 chr3 66191914 66192266 -93407517 + MT2A LTR ERVL 1 361 -172 2 1090 278 134 0 0 chr3 66192284 66192361 -93407422 + MT2A LTR ERVL 468 551 -4 2 1090 203 185 56 0 chr3 66192419 66192473 -93407310 + (TA)n Simple_repeat Simple_repeat 1 57 0 2 1090 2068 288 91 34 chr3 66192713 66193853 -93405930 - Lx8 LINE L1 -1778 5918 4692 2 1090 2008 94 32 19 chr3 66193853 66194168 -93405615 + ORR1A2 LTR MaLR 1 319 -8 2 1090 9440 154 46 11 chr3 66194172 66196010 -93403773 + ORR1A2-int LTR MaLR 1 1902 -61 2 1090 7816 104 16 1 chr3 66196414 66198152 -93401631 + L1_Mus4 LINE L1 4873 6636 0 2 1090 557 269 0 0 chr3 66198750 66198869 -93400914 - B1_Mur1 SINE Alu -30 119 1 2 1090 269 235 44 0 chr3 66199958 66200026 -93399757 + PB1D10 SINE Alu 15 85 -32 2 1090 250 289 33 11 chr3 66200259 66200350 -93399433 - PB1D7 SINE Alu -10 110 18 2 1090 544 272 29 12 chr3 66200282 66200453 -93399330 - B4A SINE B4 -118 174 1 2 1090 230 246 15 103 chr3 66201367 66201435 -93398348 - ID SINE ID -139 85 24 2 1090 234 250 15 45 chr3 66201832 66201899 -93397884 + MIRm SINE MIR 211 275 -1 2 1090 208 343 14 11 chr3 66202075 66202168 -93397615 - MIR SINE MIR -167 101 5 2 1090 268 232 14 0 chr3 66203167 66203236 -93396547 - BC1_Mm scRNA scRNA -82 70 1 2 1090 313 310 60 0 chr3 66203670 66203780 -93396003 - MER5B DNA MER1_type -3 175 59 2 1090 404 333 142 9 chr3 66203780 66203992 -93395791 + Tigger5 DNA MER2_type 1 240 -2166 2 1090 429 236 54 18 chr3 66203990 66204102 -93395681 + Tigger5 DNA MER2_type 2291 2406 0 2 1090 360 0 0 0 chr3 66204252 66204292 -93395491 + (TG)n Simple_repeat Simple_repeat 1 40 0 2 1090 207 0 0 0 chr3 66204292 66204314 -93395469 + (GA)n Simple_repeat Simple_repeat 1 23 0 2 1090 658 280 56 33 chr3 66204390 66204660 -93395123 - B4A SINE B4 -16 276 1 2 1090 272 336 80 0 chr3 66205385 66205498 -93394285 - MIRb SINE MIR -21 247 126 2 1090 1581 217 51 8 chr3 66205833 66206186 -93393597 - MTE2b LTR MaLR -11 368 1 2 1090 243 261 216 0 chr3 66206636 66206789 -93392994 - MER53 DNA hAT -2 191 6 2 1090 606 203 8 16 chr3 66207852 66207977 -93391806 + MTD LTR MaLR 1 124 -295 2 1090 326 182 112 11 chr3 66207973 66208062 -93391721 + MTD LTR MaLR 320 417 -2 2 1090 623 228 93 7 chr3 66208835 66208985 -93390798 - RSINE1 SINE B4 0 165 3 2 1090 189 74 0 0 chr3 66209120 66209147 -93390636 + (CA)n Simple_repeat Simple_repeat 1 27 0 2 1090 309 300 18 0 chr3 66210795 66210905 -93388878 - MLT1A1 LTR MaLR -1 407 296 2 1090 694 292 107 34 chr3 66211127 66211453 -93388330 - ORR1E LTR MaLR -5 354 5 2 1090 647 138 18 6 chr3 66211572 66211739 -93388044 + GA-rich Low_complexity Low_complexity 1 169 0 2 1090 192 293 24 79 chr3 66211915 66212041 -93387742 - MIR SINE MIR -32 230 112 2 1090 351 0 0 0 chr3 66212631 66212670 -93387113 + (TG)n Simple_repeat Simple_repeat 2 40 0 2 1090 272 328 58 0 chr3 66212725 66212896 -93386887 + MIRb SINE MIR 10 196 -72 2 1090 880 162 196 0 chr3 66213413 66213592 -93386191 - B3 SINE B2 -2 214 1 2 1090 23 0 0 0 chr3 66214627 66214650 -93385133 + AT_rich Low_complexity Low_complexity 1 23 0 2 1090 255 170 0 0 chr3 66214752 66214799 -93384984 + A-rich Low_complexity Low_complexity 1 47 0 2 1090 21 0 0 0 chr3 66215243 66215264 -93384519 + AT_rich Low_complexity Low_complexity 1 21 0 2 1090 483 33 0 0 chr3 66215492 66215553 -93384230 + (TG)n Simple_repeat Simple_repeat 1 61 0 2 1090 266 328 19 6 chr3 66215688 66215793 -93383990 + MIRc SINE MIR 53 154 -122 2 1090 583 331 101 28 chr3 66220009 66220435 -93379348 + MLT1C LTR MaLR 8 464 -3 2 1090 245 292 56 11 chr3 66220641 66220731 -93379052 - B4 SINE B4 -198 94 1 3 1090 3382 46 73 52 chr3 66221544 66222007 -93377776 + MT2C_Mm LTR ERVL 3 475 0 3 1090 216 149 0 0 chr3 66223193 66223240 -93376543 + (TTG)n Simple_repeat Simple_repeat 1 47 0 3 1090 463 301 26 40 chr3 66223240 66223392 -93376391 - ID_B1 SINE B4 -2 222 73 3 1090 259 250 107 0 chr3 66223403 66223487 -93376296 - L1MB3 LINE L1 -27 6156 6064 3 1090 818 270 87 84 chr3 66223506 66223770 -93376013 + MTD LTR MaLR 13 274 -126 3 1090 273 333 0 0 chr3 66223889 66223973 -93375810 - L1M5 LINE L1 -536 5704 5621 3 1090 591 15 0 0 chr3 66225204 66225272 -93374511 + (GAAA)n Simple_repeat Simple_repeat 2 69 0 3 1090 577 119 20 0 chr3 66226322 66226423 -93373360 + (TC)n Simple_repeat Simple_repeat 2 104 0 3 1090 236 245 117 9 chr3 66227167 66227278 -93372505 - L1MC4 LINE L1 -2 8040 7918 3 1090 303 262 92 18 chr3 66227501 66227610 -93372173 - L1MA4A LINE L1 -365 5938 5822 3 1090 784 266 73 74 chr3 66227784 66228134 -93371649 + MLT1A LTR MaLR 1 369 -5 3 1090 613 286 35 54 chr3 66228175 66228434 -93371349 - L1MC4 LINE L1 -370 7672 7419 3 1090 199 262 0 47 chr3 66228645 66228709 -93371074 + L3 LINE CR1 3496 3556 -933 3 1090 251 258 48 90 chr3 66228757 66228902 -93370881 + MLT1A0 LTR MaLR 227 365 0 3 1090 795 359 15 4 chr3 66229137 66229411 -93370372 + B4A SINE B4 2 278 -14 3 1090 342 0 0 0 chr3 66229452 66229490 -93370293 + (CA)n Simple_repeat Simple_repeat 2 39 0 3 1090 2692 238 165 6 chr3 66229534 66230360 -93369423 + RCHARR1 DNA MER1_type 3 959 -15 3 1090 187 203 0 33 chr3 66231047 66231108 -93368675 + GA-rich Low_complexity Low_complexity 2 60 0 3 1090 282 288 9 0 chr3 66231133 66231244 -93368539 + L1M5 LINE L1 5729 5840 -284 3 1090 378 0 0 0 chr3 66231423 66231465 -93368318 + (TAAA)n Simple_repeat Simple_repeat 2 43 0 3 1090 416 276 194 14 chr3 66231493 66231710 -93368073 + L1MEc LINE L1 48 303 -6097 3 1090 10388 147 128 17 chr3 66231707 66232904 -93366879 + Lx LINE L1 706 2052 -3828 3 1090 306 0 0 0 chr3 66232904 66232938 -93366845 + (CA)n Simple_repeat Simple_repeat 2 35 0 3 1090 10388 188 75 31 chr3 66232938 66237232 -93362551 + Lx LINE L1 2047 6654 0 3 1090 1594 243 53 3 chr3 66237239 66237577 -93362206 + Lx6 LINE L1 6937 7291 -169 3 1090 219 114 0 0 chr3 66237583 66237618 -93362165 + (TGAA)n Simple_repeat Simple_repeat 3 37 0 3 1090 8133 22 0 0 chr3 66237651 66238579 -93361204 - L1Md_T LINE L1 -418 5465 4538 3 1090 1110 16 0 0 chr3 66238579 66238702 -93361081 + L1Md_T LINE L1 5464 5586 -297 3 1090 9601 5 0 0 chr3 66238702 66239698 -93360085 + L1Md_T LINE L1 5587 6582 0 3 1090 270 215 21 62 chr3 66239820 66239964 -93359819 + (TTTG)n Simple_repeat Simple_repeat 3 140 0 3 1090 27 29 0 0 chr3 66240039 66240073 -93359710 + AT_rich Low_complexity Low_complexity 1 34 0 3 1090 244 323 19 94 chr3 66240081 66240103 -93359680 + MT2B LTR ERVL 143 156 -445 3 1090 523 295 50 7 chr3 66240103 66240243 -93359540 + B1_Mur1 SINE Alu 3 148 -1 3 1090 235 271 40 54 chr3 66240285 66240359 -93359424 + ID4_ SINE ID 6 78 -5 3 1090 684 277 150 91 chr3 66240530 66240871 -93358912 - MTE2a LTR MaLR 0 379 19 3 1090 928 276 106 22 chr3 66240877 66241366 -93358417 + L1MEc LINE L1 1003 1532 -4868 3 1090 1182 238 95 46 chr3 66241350 66241738 -93358045 + Lx8 LINE L1 5352 5758 -89 3 1090 279 0 0 0 chr3 66241812 66241843 -93357940 + (TTAA)n Simple_repeat Simple_repeat 4 34 0 3 1090 1104 291 101 57 chr3 66241848 66242445 -93357338 + Lx8 LINE L1 5780 6402 -1071 3 1090 575 261 0 0 chr3 66242545 66242660 -93357123 + Lx8 LINE L1 6410 6524 -949 3 1090 299 340 41 41 chr3 66242664 66242811 -93356972 + L1MEc LINE L1 1762 1908 -4507 3 1090 208 300 80 40 chr3 66242817 66242942 -93356841 - MIRb SINE MIR -28 240 111 3 1090 299 130 0 18 chr3 66243115 66243170 -93356613 + (TA)n Simple_repeat Simple_repeat 2 55 0 3 1090 615 39 0 0 chr3 66243170 66243248 -93356535 + (TAGA)n Simple_repeat Simple_repeat 3 80 0 3 1090 349 209 2 0 chr3 66243262 66243327 -93356456 - B1F1 SINE Alu -83 66 1 3 1090 192 268 0 0 chr3 66243348 66243419 -93356364 + C-rich Low_complexity Low_complexity 4 74 0 3 1090 467 262 85 43 chr3 66243902 66244129 -93355654 - ORR1D2 LTR MaLR 0 384 157 3 1090 945 284 17 17 chr3 66244439 66244675 -93355108 - ORR1D2 LTR MaLR -134 236 1 3 1090 1295 74 62 17 chr3 66246773 66246951 -93352832 - B2_Mm2 SINE B2 -9 186 1 3 1090 265 246 0 14 chr3 66247813 66247883 -93351900 + (TG)n Simple_repeat Simple_repeat 2 70 0 3 1090 250 296 59 34 chr3 66248730 66248849 -93350934 - L1M2 LINE L1 -1173 4970 4849 3 1090 572 310 64 3 chr3 66249315 66249617 -93350166 + L1MA4A LINE L1 5979 6298 -2 3 1090 641 256 29 6 chr3 66249924 66250097 -93349686 + MER5B DNA MER1_type 2 178 0 3 1090 714 175 0 0 chr3 66251639 66251816 -93347967 + GA-rich Low_complexity Low_complexity 1 177 0 3 1090 605 94 31 0 chr3 66252852 66252948 -93346835 + (TTTTC)n Simple_repeat Simple_repeat 1 99 0 3 1090 205 195 24 0 chr3 66253189 66253230 -93346553 + (CA)n Simple_repeat Simple_repeat 1 42 0 3 1090 4577 8 0 57 chr3 66254408 66254931 -93344852 - MT2_Mm LTR ERVL 0 493 1 3 1090 322 0 0 0 chr3 66254931 66254969 -93344814 - MERVL-int LTR ERVL 0 5485 5448 3 1090 390 167 46 35 chr3 66254969 66255056 -93344727 - ORR1A3-int LTR MaLR -1323 640 553 3 1090 48406 16 0 7 chr3 66255056 66260453 -93339330 - MERVL-int LTR ERVL -125 5360 1 3 1090 4707 10 0 12 chr3 66260453 66260952 -93338831 - MT2_Mm LTR ERVL 0 493 1 3 1090 23 33 0 0 chr3 66262263 66262293 -93337490 + AT_rich Low_complexity Low_complexity 1 30 0 3 1090 267 292 73 0 chr3 66262400 66262496 -93337287 - L2a LINE L2 -3 3423 3321 3 1090 703 267 111 131 chr3 66263375 66263582 -93336201 - B4 SINE B4 0 292 96 3 1090 1187 75 0 20 chr3 66263582 66263731 -93336052 - B1_Mm SINE Alu 0 147 2 3 1090 703 267 111 131 chr3 66263731 66263820 -93335963 - B4 SINE B4 -197 95 2 3 1090 465 19 0 0 chr3 66264869 66264923 -93334860 + (TG)n Simple_repeat Simple_repeat 2 55 0 3 1090 186 390 24 0 chr3 66265128 66265210 -93334573 + MIR3 SINE MIR 114 197 -11 3 1090 296 317 120 8 chr3 66265640 66265827 -93333956 + MIRb SINE MIR 20 230 -38 3 1090 723 312 94 25 chr3 66266037 66266323 -93333460 - MLT1A0 LTR MaLR 0 365 60 3 1090 509 322 58 31 chr3 66267342 66267677 -93332106 - MER57E1 LTR ERV1 -9 402 20 3 1090 474 331 0 33 chr3 66267875 66268028 -93331755 + B1F2 SINE Alu 1 148 -1 3 1090 320 284 10 19 chr3 66268350 66268454 -93331329 + MLT1C LTR MaLR 39 141 -326 3 1090 254 353 12 12 chr3 66268561 66268647 -93331136 + MLT1C LTR MaLR 293 378 -12 3 1090 291 114 0 0 chr3 66269141 66269185 -93330598 + (TG)n Simple_repeat Simple_repeat 1 44 0 3 1090 267 278 241 0 chr3 66269198 66269306 -93330477 - RSINE1 SINE B4 -17 148 15 3 1090 278 352 91 27 chr3 66271871 66272058 -93327725 - MIRb SINE MIR -18 250 52 3 1090 574 329 14 9 chr3 66272343 66272564 -93327219 + ID_B1 SINE B4 3 224 0 3 1090 528 221 126 155 chr3 66273059 66273108 -93326675 + RMER19C LTR ERVK 1 49 -562 3 1090 3030 48 0 28 chr3 66273108 66273472 -93326311 - L1_Mus1 LINE L1 0 6567 6214 3 1090 528 229 124 148 chr3 66273472 66273724 -93326059 + RMER19C LTR ERVK 50 287 -450 3 1090 556 145 63 16 chr3 66273797 66273923 -93325860 - Lx9 LINE L1 0 7644 7513 3 1090 486 0 0 0 chr3 66274570 66274624 -93325159 + (CA)n Simple_repeat Simple_repeat 1 54 0 3 1090 414 0 0 0 chr3 66274624 66274669 -93325114 + (GA)n Simple_repeat Simple_repeat 2 47 0 3 1090 21 0 0 0 chr3 66274944 66274965 -93324818 + AT_rich Low_complexity Low_complexity 1 21 0 3 1090 380 315 266 9 chr3 66275203 66275541 -93324242 + MLT2B2 LTR ERVL 1 488 -66 3 1090 556 50 25 0 chr3 66275621 66275701 -93324082 + (TAGA)n Simple_repeat Simple_repeat 1 82 0 3 1090 411 305 313 0 chr3 66276581 66276869 -93322914 - MTE2b LTR MaLR 0 379 1 3 1090 993 297 52 19 chr3 66276871 66277235 -93322548 - RMER5 LTR ERV1 -81 453 78 3 1090 217 152 0 0 chr3 66277293 66277326 -93322457 + T-rich Low_complexity Low_complexity 1 33 0 3 1090 285 333 92 72 chr3 66277403 66277804 -93321979 - MARNA DNA Mariner -155 431 23 3 1090 955 140 12 0 chr3 66277954 66278125 -93321658 + CT-rich Low_complexity Low_complexity 2 174 0 3 1090 5475 181 52 31 chr3 66278176 66280104 -93319679 - Lx4B LINE L1 -17 7041 5062 3 1090 2203 176 19 9 chr3 66280111 66280575 -93319208 - Lx4B LINE L1 -3103 2774 2306 3 1090 4174 188 72 8 chr3 66280576 66281772 -93318011 - Lx4B LINE L1 -3730 2156 884 3 1090 432 55 0 0 chr3 66282598 66282653 -93317130 + (CA)n Simple_repeat Simple_repeat 1 55 0 3 1090 278 372 94 19 chr3 66286127 66286286 -93313497 + MLT1J LTR MaLR 114 284 -228 3 1090 369 0 0 0 chr3 66286534 66286575 -93313208 + (TG)n Simple_repeat Simple_repeat 1 41 0 3 1090 438 101 0 0 chr3 66286607 66286676 -93313107 + (TC)n Simple_repeat Simple_repeat 2 70 0 3 1090 479 282 0 33 chr3 66286680 66286801 -93312982 - PB1D10 SINE Alu 0 117 1 3 1090 256 297 0 72 chr3 66286746 66286815 -93312968 - B4 SINE B4 -152 140 77 3 1090 183 184 0 0 chr3 66287195 66287233 -93312550 + (TATATG)n Simple_repeat Simple_repeat 2 39 0 3 1090 246 274 0 0 chr3 66288500 66288551 -93311232 - MER58C DNA MER1_type -164 51 1 3 1090 1003 129 0 13 chr3 66289241 66289539 -93310244 + (TG)n Simple_repeat Simple_repeat 1 294 0 3 1090 271 309 106 0 chr3 66290519 66290613 -93309170 + MIRb SINE MIR 43 146 -122 3 1090 396 0 0 0 chr3 66290623 66290667 -93309116 + (TTTTA)n Simple_repeat Simple_repeat 1 44 0 3 1090 837 232 19 63 chr3 66290669 66290876 -93308907 - B3 SINE B2 -17 199 2 3 1090 464 31 0 30 chr3 66290984 66291051 -93308732 + (TCTCTG)n Simple_repeat Simple_repeat 2 66 0 3 1090 294 273 13 0 chr3 66291163 66291240 -93308543 - ID4_ SINE ID -4 79 2 3 1090 895 62 0 0 chr3 66291376 66291489 -93308294 + B2_Mm2 SINE B2 6 118 -77 3 1090 1148 81 0 13 chr3 66291490 66291640 -93308143 + B1_Mus1 SINE Alu 1 148 0 3 1090 213 43 20 61 chr3 66291647 66291696 -93308087 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 3 1090 333 365 9 0 chr3 66291884 66291991 -93307792 - PB1D10 SINE Alu 0 117 10 3 1090 873 249 14 34 chr3 66292026 66292234 -93307549 + B3 SINE B2 1 204 -12 3 1090 264 324 230 0 chr3 66292376 66292524 -93307259 + MER5A DNA MER1_type 7 188 -1 3 1090 182 346 77 23 chr3 66293314 66293444 -93306339 - L3 LINE CR1 -4 4485 4349 4 1090 506 274 57 71 chr3 66293998 66294210 -93305573 - ID_B1 SINE B4 -14 210 2 4 1090 342 36 54 0 chr3 66294312 66294368 -93305415 + (TG)n Simple_repeat Simple_repeat 2 60 0 4 1090 225 312 47 0 chr3 66294378 66294442 -93305341 - ID4_ SINE ID -11 72 6 4 1090 198 103 0 0 chr3 66294973 66295002 -93304781 + (GA)n Simple_repeat Simple_repeat 2 30 0 4 1090 1510 57 0 25 chr3 66295674 66295871 -93303912 - B2_Mm1t SINE B2 -1 192 1 4 1090 249 279 63 0 chr3 66296024 66296103 -93303680 - L1M2 LINE L1 -1273 4873 4790 4 1090 408 55 0 0 chr3 66296569 66296624 -93303159 + (TATG)n Simple_repeat Simple_repeat 2 56 0 4 1090 270 0 0 0 chr3 66296634 66296664 -93303119 + (TTTG)n Simple_repeat Simple_repeat 3 32 0 4 1090 226 344 59 7 chr3 66297475 66297627 -93302156 - L1M5 LINE L1 -1191 4955 4796 4 1090 203 204 0 0 chr3 66299090 66299139 -93300644 + L2a LINE L2 2368 2416 -1003 4 1090 1383 219 128 12 chr3 66299156 66299577 -93300206 - Lx9 LINE L1 -1 7643 7174 4 1090 1232 187 48 21 chr3 66299564 66299854 -93299929 + Lx9 LINE L1 6881 7178 -466 4 1090 3421 88 0 11 chr3 66300021 66300492 -93299291 - L1Md_F2 LINE L1 -12 6570 6105 4 1090 474 75 0 15 chr3 66300492 66300549 -93299234 + L1_Mus4 LINE L1 5684 5740 -896 4 1090 342 352 103 13 chr3 66300575 66300984 -93298799 + L2a LINE L2 2776 3216 -210 4 1090 213 39 0 0 chr3 66301015 66301041 -93298742 + (CTTA)n Simple_repeat Simple_repeat 3 28 0 4 1090 213 286 143 0 chr3 66301050 66301127 -93298656 + L2a LINE L2 3312 3399 -27 4 1090 726 44 0 0 chr3 66302022 66302112 -93297671 + (TCTCC)n Simple_repeat Simple_repeat 2 91 0 4 1090 401 328 20 65 chr3 66303098 66303297 -93296486 + MLT1J1 LTR MaLR 21 210 -234 4 1090 815 156 35 0 chr3 66303371 66303512 -93296271 - B1_Mur1 SINE Alu 0 149 4 4 1090 187 182 196 18 chr3 66303587 66303643 -93296140 + MIRm SINE MIR 125 190 -86 4 1090 22 0 0 0 chr3 66304166 66304188 -93295595 + AT_rich Low_complexity Low_complexity 1 22 0 4 1090 27 81 0 0 chr3 66304291 66304353 -93295430 + AT_rich Low_complexity Low_complexity 1 62 0 4 1090 359 361 99 6 chr3 66304577 66304758 -93295025 - MIRb SINE MIR -44 224 27 4 1090 192 40 0 0 chr3 66306598 66306623 -93293160 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 4 1090 292 353 76 6 chr3 66307269 66307426 -93292357 - MIR SINE MIR 0 262 95 4 1090 749 350 78 49 chr3 66307435 66307907 -93291876 + MLT1F2 LTR MaLR 73 558 -2 4 1090 387 266 23 31 chr3 66310215 66310343 -93289440 - Tigger15a DNA TcMar -257 458 332 4 1090 339 224 106 0 chr3 66310968 66311053 -93288730 + B3 SINE B2 15 108 -108 4 1090 315 354 65 51 chr3 66311345 66311562 -93288221 - L3 LINE CR1 -113 4376 4157 4 1090 220 323 31 0 chr3 66311933 66311998 -93287785 + L2c LINE L2 3317 3383 -4 4 1090 746 268 122 8 chr3 66312719 66312982 -93286801 + MER33 DNA MER1_type 2 294 -30 4 1090 4292 45 2 24 chr3 66313014 66313554 -93286229 - L1_Mus1 LINE L1 0 6567 6040 4 1090 327 127 0 0 chr3 66313658 66313721 -93286062 + (GA)n Simple_repeat Simple_repeat 2 64 0 4 1090 22 0 0 0 chr3 66313753 66313775 -93286008 + AT_rich Low_complexity Low_complexity 1 22 0 4 1090 180 49 71 24 chr3 66315572 66315614 -93284169 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 4 1090 3592 212 69 12 chr3 66316060 66316891 -93282892 + RMER1C Other Other 464 1341 -1 4 1090 1321 197 109 47 chr3 66316907 66317227 -93282556 - RMER15 LTR ERVL -235 340 1 4 1090 390 308 22 36 chr3 66317464 66317602 -93282181 + ID_B1 SINE B4 82 217 -7 4 1090 390 127 14 63 chr3 66317747 66317890 -93281893 + T-rich Low_complexity Low_complexity 2 137 0 4 1090 855 148 21 0 chr3 66317897 66318039 -93281744 - B1_Mur4 SINE Alu -1 149 5 4 1090 474 283 9 9 chr3 66318225 66318332 -93281451 + PB1D10 SINE Alu 7 113 -4 4 1090 823 243 73 9 chr3 66318394 66318614 -93281169 + MLT1D LTR MaLR 270 503 -2 4 1090 24 53 0 0 chr3 66320418 66320456 -93279327 + AT_rich Low_complexity Low_complexity 1 38 0 4 1090 3123 272 76 35 chr3 66320495 66321667 -93278116 + Lx8 LINE L1 6252 7471 -2 4 1091 228 35 0 0 chr3 66322487 66322516 -93277267 + (CA)n Simple_repeat Simple_repeat 2 30 0 4 1091 1061 133 0 11 chr3 66322838 66323020 -93276763 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 4 1091 440 145 24 0 chr3 66323022 66323105 -93276678 + GA-rich Low_complexity Low_complexity 3 87 0 4 1091 1143 75 11 17 chr3 66323108 66323285 -93276498 + (GAAA)n Simple_repeat Simple_repeat 1 176 0 4 1091 23 0 0 0 chr3 66323470 66323493 -93276290 + AT_rich Low_complexity Low_complexity 1 23 0 4 1091 354 271 11 6 chr3 66324071 66324162 -93275621 - B1F SINE Alu -57 91 3 4 1091 451 353 73 18 chr3 66324216 66324490 -93275293 + L1MEg LINE L1 33 321 -5763 4 1091 396 0 0 0 chr3 66324838 66324882 -93274901 + (CA)n Simple_repeat Simple_repeat 1 44 0 4 1091 1806 274 105 21 chr3 66324913 66325853 -93273930 + L1MC2 LINE L1 5176 6175 -169 4 1091 34 24 0 0 chr3 66325997 66326038 -93273745 + AT_rich Low_complexity Low_complexity 1 41 0 4 1091 859 102 7 7 chr3 66326359 66326497 -93273286 + (TTCC)n Simple_repeat Simple_repeat 3 140 0 4 1091 3955 77 4 6 chr3 66326500 66327023 -93272760 - Lx3_Mus LINE L1 -4 7005 6484 4 1091 912 244 17 0 chr3 66327023 66327203 -93272580 - B3 SINE B2 -32 184 2 4 1091 1272 179 151 21 chr3 66327538 66327817 -93271966 + ORR1B2 LTR MaLR 1 315 -52 4 1091 24 53 0 0 chr3 66327817 66327855 -93271928 + AT_rich Low_complexity Low_complexity 1 38 0 4 1091 1440 316 66 12 chr3 66327890 66328743 -93271040 + Lx9 LINE L1 6400 7322 -151 4 1091 231 388 0 10 chr3 66328762 66328866 -93270917 - RMER12 LTR ERVK -471 851 749 4 1091 715 303 103 25 chr3 66328988 66329368 -93270415 + L1M2 LINE L1 4603 5008 -1135 4 1091 2082 101 3 0 chr3 66329368 66329664 -93270119 + L1_Mus2 LINE L1 6270 6566 0 4 1091 715 303 103 25 chr3 66329664 66329933 -93269850 + L1M2 LINE L1 5009 5303 -840 4 1091 250 152 0 0 chr3 66329969 66330015 -93269768 + L1_Mur3 LINE L1 5355 5400 -480 4 1091 1130 82 0 0 chr3 66330049 66330195 -93269588 - B1_Mm SINE Alu 0 147 2 4 1091 819 317 48 18 chr3 66330202 66330639 -93269144 - Lx8 LINE L1 0 7473 7024 4 1091 297 303 108 18 chr3 66330638 66330860 -93268923 + L1_Mur3 LINE L1 5395 5636 -244 4 1091 343 310 77 97 chr3 66331389 66331896 -93267887 + L1ME1 LINE L1 5647 6143 -36 4 1091 282 269 85 0 chr3 66332459 66332589 -93267194 + L1M5 LINE L1 2403 2543 -3603 4 1091 220 349 0 0 chr3 66332674 66332737 -93267046 + B4A SINE B4 3 65 -227 4 1091 187 68 43 43 chr3 66332737 66332783 -93267000 + (CAGAGA)n Simple_repeat Simple_repeat 3 48 0 4 1091 2831 251 70 15 chr3 66333125 66333797 -93265986 + Lx7 LINE L1 5479 6187 -1509 4 1091 615 117 0 0 chr3 66333797 66333891 -93265892 + (CA)n Simple_repeat Simple_repeat 1 94 0 4 1091 2831 245 78 18 chr3 66333891 66334107 -93265676 + Lx7 LINE L1 6188 6417 -1279 4 1091 1961 205 8 121 chr3 66334104 66334549 -93265234 + Lx7 LINE L1 7155 7555 -141 4 1091 219 69 0 0 chr3 66334549 66334578 -93265205 + (CA)n Simple_repeat Simple_repeat 2 30 0 4 1091 1961 205 8 121 chr3 66334578 66334743 -93265040 + Lx7 LINE L1 7556 7696 0 4 1091 2338 268 36 44 chr3 66334800 66335621 -93264162 + Charlie12 DNA MER1_type 1186 2000 -873 4 1091 417 223 25 74 chr3 66335625 66335746 -93264037 - RMER15 LTR ERVL -29 546 432 4 1091 554 224 47 53 chr3 66335774 66335944 -93263839 - RMER15 LTR ERVL -355 220 52 4 1091 517 231 27 18 chr3 66336055 66336165 -93263618 - B1_Mur1 SINE Alu -17 132 22 4 1091 596 150 9 0 chr3 66336214 66336327 -93263456 + CT-rich Low_complexity Low_complexity 3 116 0 4 1091 1284 48 0 0 chr3 66336327 66336474 -93263309 - B1_Mm SINE Alu 0 147 1 4 1091 180 0 0 0 chr3 66336476 66336496 -93263287 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 4 1091 732 241 0 7 chr3 66336498 66336636 -93263147 - B1_Mur1 SINE Alu -7 142 6 4 1091 289 374 102 73 chr3 66336696 66336941 -93262842 + LTR16A1 LTR ERVL 48 299 -157 4 1091 610 335 91 54 chr3 66336947 66337297 -93262486 + LTR40a LTR ERVL 19 381 -138 4 1091 330 26 0 0 chr3 66337343 66337382 -93262401 + (T)n Simple_repeat Simple_repeat 1 39 0 4 1091 7532 59 0 4 chr3 66337385 66338322 -93261461 + L1_Mm LINE L1 4393 5325 -558 4 1091 1581 211 63 48 chr3 66338611 66339010 -93260773 - MTD LTR MaLR -14 405 1 4 1091 306 296 125 0 chr3 66339010 66339097 -93260686 - B1F1 SINE Alu -51 98 1 4 1091 198 0 0 0 chr3 66342410 66342432 -93257351 + (TG)n Simple_repeat Simple_repeat 1 22 0 4 1091 195 298 0 50 chr3 66343592 66343652 -93256131 + MIR SINE MIR 20 76 -186 4 1091 22 53 0 35 chr3 66344065 66344088 -93255695 + AT_rich Low_complexity Low_complexity 1 22 0 4 1091 381 335 25 12 chr3 66344088 66344248 -93255535 + RSINE1 SINE B4 1 162 -3 4 1091 22 53 0 35 chr3 66344248 66344282 -93255501 + AT_rich Low_complexity Low_complexity 1 34 0 4 1091 4976 27 0 9 chr3 66345108 66345665 -93254118 + L1Md_F3 LINE L1 6033 6584 0 4 1091 560 281 97 88 chr3 66345761 66346069 -93253714 + MTEa LTR MaLR 55 365 -14 4 1091 717 132 0 0 chr3 66346591 66346735 -93253048 + (GA)n Simple_repeat Simple_repeat 2 145 0 4 1091 219 254 18 0 chr3 66346744 66346799 -93252984 + (TG)n Simple_repeat Simple_repeat 2 57 0 4 1091 249 352 56 0 chr3 66347911 66348036 -93251747 - MIR3 SINE MIR -5 203 72 4 1091 184 283 17 0 chr3 66348213 66348273 -93251510 - MIRc SINE MIR -133 135 75 4 1091 1306 307 53 55 chr3 66348362 66348925 -93250858 + MLT1E2 LTR MaLR 69 627 0 4 1091 337 231 50 25 chr3 66350171 66350251 -93249532 - B3 SINE B2 -36 180 99 4 1091 410 328 45 85 chr3 66350254 66350454 -93249329 + MLT2C1 LTR ERVL 199 390 -7 4 1091 1238 282 120 32 chr3 66351037 66351805 -93247978 + L1MA8 LINE L1 5100 5936 -355 4 1091 21 0 0 0 chr3 66353431 66353452 -93246331 + AT_rich Low_complexity Low_complexity 1 21 0 5 1091 529 285 20 20 chr3 66353538 66353685 -93246098 - MIRb SINE MIR -27 241 95 5 1091 346 228 61 37 chr3 66354352 66354434 -93245349 + B4A SINE B4 3 86 -206 5 1091 197 352 43 14 chr3 66354435 66354576 -93245207 - L2a LINE L2 -15 3411 3267 5 1091 777 22 0 0 chr3 66354821 66354912 -93244871 + (CAGGA)n Simple_repeat Simple_repeat 1 91 0 5 1091 344 249 142 24 chr3 66355043 66355212 -93244571 + Lx8 LINE L1 7280 7468 -5 5 1091 22 0 0 0 chr3 66355214 66355236 -93244547 + AT_rich Low_complexity Low_complexity 1 22 0 5 1091 228 35 0 0 chr3 66357333 66357362 -93242421 + (TTTTA)n Simple_repeat Simple_repeat 3 31 0 5 1091 281 292 15 0 chr3 66357716 66357781 -93242002 + BC1_Mm scRNA scRNA 7 72 -80 5 1091 266 351 32 0 chr3 66358299 66358393 -93241390 - PB1 SINE Alu -2 125 29 5 1091 1002 25 0 0 chr3 66358432 66358553 -93241230 + (TG)n Simple_repeat Simple_repeat 1 121 0 5 1091 501 293 114 50 chr3 66358567 66358707 -93241076 - B3 SINE B2 -67 149 1 5 1091 202 284 101 40 chr3 66358979 66359078 -93240705 + MIR3 SINE MIR 92 196 -12 5 1091 1158 122 0 0 chr3 66359343 66359523 -93240260 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 5 1091 477 232 0 0 chr3 66360158 66360240 -93239543 + ID4_ SINE ID 2 83 0 5 1091 21 36 0 0 chr3 66361011 66361039 -93238744 + AT_rich Low_complexity Low_complexity 1 28 0 5 1091 205 326 80 70 chr3 66361415 66361616 -93238167 - L2c LINE L2 -237 3150 2948 5 1091 1742 100 25 16 chr3 66363101 66363346 -93236437 + L1Md_F2 LINE L1 6317 6563 -19 5 1091 935 187 144 5 chr3 66363375 66363569 -93236214 - URR1B DNA MER1_type 0 225 5 5 1091 374 276 0 10 chr3 66363587 66363686 -93236097 + MTEb LTR MaLR 3 100 -259 5 1091 512 237 77 28 chr3 66363747 66363890 -93235893 + MTEb LTR MaLR 230 379 0 5 1091 321 93 53 0 chr3 66363963 66364038 -93235745 + (TTTTG)n Simple_repeat Simple_repeat 2 80 0 5 1091 274 284 9 27 chr3 66364286 66364398 -93235385 + A-rich Low_complexity Low_complexity 2 111 0 5 1091 231 373 16 0 chr3 66364464 66364590 -93235193 + Lx8 LINE L1 7192 7319 -154 5 1091 24 53 0 0 chr3 66364713 66364751 -93235032 + AT_rich Low_complexity Low_complexity 1 38 0 5 1091 203 180 16 47 chr3 66364894 66364958 -93234825 + (CATA)n Simple_repeat Simple_repeat 2 63 0 5 1091 4827 206 48 34 chr3 66365457 66366480 -93233303 - Lx7 LINE L1 -276 7420 6384 5 1091 921 148 0 27 chr3 66366516 66366662 -93233121 - B1_Mur4 SINE Alu -7 143 2 5 1091 510 17 0 0 chr3 66367144 66367203 -93232580 + (TC)n Simple_repeat Simple_repeat 1 59 0 5 1091 247 42 41 41 chr3 66367619 66367668 -93232115 + (TCTCTG)n Simple_repeat Simple_repeat 5 53 0 5 1091 511 165 66 0 chr3 66367750 66367841 -93231942 - B1_Mus2 SINE Alu -1 146 50 5 1091 1256 79 6 0 chr3 66367937 66368115 -93231668 + (GGGGA)n Simple_repeat Simple_repeat 1 179 0 5 1091 621 315 66 91 chr3 66369454 66369817 -93229966 - ORR1E LTR MaLR 0 359 6 5 1091 3926 280 67 77 chr3 66369796 66370744 -93229039 - ORR1E-int LTR MaLR -27 1553 579 5 1091 1157 88 0 39 chr3 66370744 66370898 -93228885 + B1_Mus1 SINE Alu 1 148 0 5 1091 3926 280 67 77 chr3 66370898 66371176 -93228607 - ORR1E-int LTR MaLR -1002 578 345 5 1091 591 26 13 0 chr3 66371176 66371252 -93228531 - L1Md_T LINE L1 -2 6580 6504 5 1091 3926 280 67 77 chr3 66371252 66371446 -93228337 - ORR1E-int LTR MaLR -1236 344 147 5 1091 318 257 43 0 chr3 66371450 66371520 -93228263 - ORR1E LTR MaLR -278 81 9 5 1091 529 296 43 58 chr3 66372479 66372687 -93227096 - B3 SINE B2 -6 210 6 5 1091 313 345 89 23 chr3 66372799 66373013 -93226770 - MIRb SINE MIR -32 236 9 5 1091 212 79 0 50 chr3 66375101 66375141 -93224642 + (TTTTTG)n Simple_repeat Simple_repeat 5 42 0 5 1091 1051 61 106 0 chr3 66375141 66375273 -93224510 - B1_Mm SINE Alu 0 147 2 5 1091 307 282 162 0 chr3 66375491 66375608 -93224175 - MLT1D LTR MaLR -3 502 367 5 1091 196 407 62 0 chr3 66375796 66375909 -93223874 + L2b LINE L2 3256 3375 0 5 1091 348 259 42 56 chr3 66376080 66376223 -93223560 - MLT1A LTR MaLR 0 408 268 5 1091 211 140 0 23 chr3 66376338 66376382 -93223401 + A-rich Low_complexity Low_complexity 2 44 0 5 1091 444 289 0 72 chr3 66376462 66376615 -93223168 - MLT1A LTR MaLR -211 163 22 5 1091 831 271 26 0 chr3 66376829 66377021 -93222762 + B4A SINE B4 1 197 -95 5 1091 221 119 0 23 chr3 66377779 66377822 -93221961 + (TTTTC)n Simple_repeat Simple_repeat 2 43 0 5 1091 351 0 0 0 chr3 66379024 66379063 -93220720 + (GA)n Simple_repeat Simple_repeat 1 39 0 5 1091 484 281 35 43 chr3 66379342 66379483 -93220300 + RSINE1 SINE B4 4 143 -22 5 1091 206 336 153 46 chr3 66381198 66381329 -93218454 + L2b LINE L2 3047 3191 -184 5 1091 197 377 72 33 chr3 66381566 66381747 -93218036 - L4 LINE RTE -1636 393 206 5 1091 318 26 0 0 chr3 66382931 66382970 -93216813 + (CCA)n Simple_repeat Simple_repeat 1 39 0 5 1091 221 244 0 0 chr3 66383029 66383074 -93216709 + GA-rich Low_complexity Low_complexity 6 50 0 5 1091 799 246 55 32 chr3 66383263 66383481 -93216302 + ID_B1 SINE B4 2 224 0 5 1091 721 269 120 5 chr3 66383640 66383857 -93215926 - MLT1C LTR MaLR -1 466 225 5 1091 580 135 0 213 chr3 66383920 66384089 -93215694 - L1_Mur2 LINE L1 -1188 4689 4557 5 1091 234 247 71 36 chr3 66384089 66384173 -93215610 - MLT1C LTR MaLR -336 169 83 5 1091 11723 191 49 26 chr3 66384197 66387142 -93212641 + Lx5 LINE L1 3702 6661 -397 5 1091 474 33 0 0 chr3 66387142 66387202 -93212581 + (CA)n Simple_repeat Simple_repeat 1 60 0 5 1091 2777 283 63 76 chr3 66387202 66387552 -93212231 + Lx5 LINE L1 6662 7013 -45 5 1091 317 336 51 8 chr3 66387580 66387593 -93212190 + B4A SINE B4 73 85 -207 5 1091 414 62 49 12 chr3 66387593 66387675 -93212108 + (CAGAGA)n Simple_repeat Simple_repeat 6 90 0 5 1091 317 336 51 8 chr3 66387675 66387778 -93212005 + B4A SINE B4 86 193 -99 5 1091 732 176 6 170 chr3 66387680 66387851 -93211932 + B1_Mur2 SINE Alu 7 149 0 5 1091 190 263 0 0 chr3 66388099 66388137 -93211646 - L2b LINE L2 -303 3072 3035 5 1091 414 0 0 0 chr3 66390587 66390633 -93209150 + (TG)n Simple_repeat Simple_repeat 2 47 0 5 1091 709 296 28 6 chr3 66391152 66391329 -93208454 - B3 SINE B2 -7 209 29 5 1091 306 0 0 0 chr3 66391531 66391565 -93208218 + (TC)n Simple_repeat Simple_repeat 2 35 0 5 1091 243 0 0 0 chr3 66391565 66391591 -93208192 + (TG)n Simple_repeat Simple_repeat 2 28 0 5 1091 403 301 68 61 chr3 66391591 66391655 -93208128 - B4A SINE B4 -23 269 204 5 1091 2383 65 17 111 chr3 66391655 66392016 -93207767 + ORR1A2 LTR MaLR 1 327 0 5 1091 403 279 36 45 chr3 66392016 66392172 -93207611 - B4A SINE B4 -89 203 3 5 1091 417 20 0 0 chr3 66393140 66393190 -93206593 + (TG)n Simple_repeat Simple_repeat 2 51 0 5 1091 342 0 0 0 chr3 66393426 66393464 -93206319 + (TAAA)n Simple_repeat Simple_repeat 2 39 0 5 1091 2705 112 19 80 chr3 66393492 66393966 -93205817 + BGLII_A LTR ERVK 1 445 0 5 1091 456 72 0 0 chr3 66394044 66394113 -93205670 + (CTAGG)n Simple_repeat Simple_repeat 5 73 0 5 1091 607 278 0 19 chr3 66394621 66394775 -93205008 + RMER15 LTR ERVL 359 509 -66 5 1091 683 230 157 0 chr3 66394793 66394971 -93204812 + B3 SINE B2 1 206 -10 5 1091 642 26 0 0 chr3 66395240 66395316 -93204467 + (TCC)n Simple_repeat Simple_repeat 1 76 0 5 1091 243 0 0 0 chr3 66395480 66395507 -93204276 + (T)n Simple_repeat Simple_repeat 1 27 0 5 1091 24 0 0 0 chr3 66397099 66397123 -93202660 + AT_rich Low_complexity Low_complexity 1 24 0 5 1091 411 38 0 0 chr3 66398984 66399037 -93200746 + (CA)n Simple_repeat Simple_repeat 2 54 0 5 1091 391 333 78 66 chr3 66399647 66399814 -93199969 - MER5A DNA MER1_type -1 188 20 5 1091 509 333 92 27 chr3 66399922 66400258 -93199525 + Lx8 LINE L1 7116 7473 0 5 1091 790 265 47 29 chr3 66401098 66401374 -93198409 + Charlie7 DNA MER1_type 397 677 -1935 5 1091 825 79 0 0 chr3 66401424 66401538 -93198245 + (TA)n Simple_repeat Simple_repeat 1 114 0 5 1091 26 0 0 0 chr3 66404249 66404275 -93195508 + AT_rich Low_complexity Low_complexity 1 26 0 5 1091 297 0 0 0 chr3 66405850 66405883 -93193900 + (TC)n Simple_repeat Simple_repeat 1 33 0 5 1091 201 274 9 28 chr3 66405895 66405921 -93193862 + (TTTG)n Simple_repeat Simple_repeat 4 28 0 5 1091 201 74 0 0 chr3 66405921 66405948 -93193835 + (TCTG)n Simple_repeat Simple_repeat 2 28 0 5 1091 201 274 9 28 chr3 66405948 66406030 -93193753 + (TTTG)n Simple_repeat Simple_repeat 2 83 0 5 1091 752 295 17 6 chr3 66406698 66406872 -93192911 + B3A SINE B2 1 176 -22 5 1091 27 29 0 0 chr3 66406872 66406906 -93192877 + AT_rich Low_complexity Low_complexity 1 34 0 5 1091 243 0 0 0 chr3 66406978 66407005 -93192778 + (A)n Simple_repeat Simple_repeat 1 27 0 5 1091 408 20 0 0 chr3 66407672 66407721 -93192062 + (TG)n Simple_repeat Simple_repeat 2 50 0 5 1091 318 106 0 0 chr3 66409578 66409625 -93190158 + (CA)n Simple_repeat Simple_repeat 1 47 0 5 1091 224 330 98 27 chr3 66409806 66409918 -93189865 - L2c LINE L2 -1 3386 3267 5 1091 400 339 78 74 chr3 66411159 66411417 -93188366 + MLT2B3 LTR ERVL 280 538 -16 5 1091 904 225 112 7 chr3 66411417 66411694 -93188089 - RCHARR1 DNA MER1_type 0 974 669 5 1091 925 254 81 19 chr3 66411664 66411774 -93188009 + MTE2a LTR MaLR 80 195 -184 5 1091 396 0 0 0 chr3 66411774 66411818 -93187965 + (TG)n Simple_repeat Simple_repeat 2 45 0 5 1091 925 254 81 19 chr3 66411818 66411968 -93187815 + MTE2a LTR MaLR 196 355 -24 5 1091 265 265 0 29 chr3 66412281 66412351 -93187432 + T-rich Low_complexity Low_complexity 2 69 0 5 1091 7809 69 4 18 chr3 66412610 66413687 -93186096 - L1_Mus2 LINE L1 -1 6565 5500 5 1091 2935 107 7 0 chr3 66413686 66414098 -93185685 + L1_Mm LINE L1 4420 4834 -1049 5 1091 1027 310 46 23 chr3 66414103 66414625 -93185158 + L1M2 LINE L1 4099 4632 -1511 5 1091 6534 208 159 14 chr3 66414829 66415925 -93183858 + L1_Mur2 LINE L1 896 2049 -3837 5 1091 360 0 0 0 chr3 66415925 66415965 -93183818 + (CA)n Simple_repeat Simple_repeat 2 41 0 6 1091 6534 221 234 15 chr3 66415965 66416888 -93182895 + L1_Mur2 LINE L1 2050 3381 -2505 5 1091 279 0 0 0 chr3 66416888 66416919 -93182864 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 6 1091 6534 221 234 15 chr3 66416919 66417348 -93182435 + L1_Mur2 LINE L1 3382 3818 -2068 5 1091 650 162 0 0 chr3 66417345 66417456 -93182327 + Lx5 LINE L1 5686 5796 -1254 6 1091 334 68 0 0 chr3 66417458 66417502 -93182281 - L1_Mus4 LINE L1 -280 6356 6313 6 1091 1963 84 11 32 chr3 66417502 66417785 -93181998 + L1_Mus4 LINE L1 6360 6636 0 6 1091 236 128 51 0 chr3 66417799 66417877 -93181906 + A-rich Low_complexity Low_complexity 2 83 0 6 1091 5803 204 43 32 chr3 66417881 66419134 -93180649 + Lx5 LINE L1 5783 7049 -1 6 1091 1570 299 63 8 chr3 66419140 66419906 -93179877 + L1M2 LINE L1 4632 5441 -856 5 1091 501 284 37 7 chr3 66419907 66420042 -93179741 + B3A SINE B2 3 141 -57 6 1091 486 0 0 0 chr3 66420042 66420096 -93179687 + (CA)n Simple_repeat Simple_repeat 2 55 0 6 1091 728 266 131 26 chr3 66420100 66420176 -93179607 + L1M2 LINE L1 5428 5506 -794 5 1091 3252 80 2 2 chr3 66420176 66420576 -93179207 + MTB LTR MaLR 1 400 0 6 1091 728 266 131 26 chr3 66420576 66420843 -93178940 + L1M2 LINE L1 5507 5807 -493 5 1091 2609 141 83 15 chr3 66420847 66421315 -93178468 + RLTR16 LTR ERVK 6 505 0 6 1091 19445 213 51 37 chr3 66421439 66424006 -93175777 - Lx6 LINE L1 -17 7443 4836 6 1091 468 0 0 0 chr3 66424006 66424058 -93175725 + (TA)n Simple_repeat Simple_repeat 2 53 0 6 1091 19445 185 62 61 chr3 66424058 66425389 -93174394 - Lx6 LINE L1 -1045 4835 3485 6 1091 396 0 0 0 chr3 66425389 66425433 -93174350 + (TC)n Simple_repeat Simple_repeat 2 45 0 6 1091 19445 185 62 61 chr3 66425433 66426908 -93172875 - Lx6 LINE L1 -2396 3484 1824 6 1091 198 0 0 0 chr3 66426908 66426930 -93172853 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 6 1091 881 166 160 0 chr3 66426930 66427105 -93172678 - RMER15 LTR ERVL -106 469 267 6 1091 19445 191 54 46 chr3 66427105 66428091 -93171692 - Lx6 LINE L1 -4057 1823 859 6 1091 417 306 57 40 chr3 66428095 66428323 -93171460 - Lx6 LINE L1 -7432 296 65 6 1091 1760 188 92 16 chr3 66428944 66429312 -93170471 - MTC LTR MaLR 0 421 26 6 1091 204 354 32 64 chr3 66429346 66429533 -93170250 + L2c LINE L2 3018 3198 -189 6 1091 183 80 0 0 chr3 66429657 66429682 -93170101 + (TGAA)n Simple_repeat Simple_repeat 3 27 0 6 1091 312 241 12 25 chr3 66429689 66429770 -93170013 + MIR3 SINE MIR 118 197 -11 6 1091 205 176 0 0 chr3 66430822 66430856 -93168927 + (GTTTG)n Simple_repeat Simple_repeat 2 35 0 6 1091 199 0 65 0 chr3 66430856 66430887 -93168896 + (TTTTG)n Simple_repeat Simple_repeat 3 35 0 6 1091 879 119 128 24 chr3 66430996 66431160 -93168623 + Lx LINE L1 6470 6650 -4 6 1091 270 0 0 0 chr3 66431599 66431629 -93168154 + (TAA)n Simple_repeat Simple_repeat 2 31 0 6 1091 39147 60 1 4 chr3 66431932 66440120 -93159663 - L1Md_T LINE L1 0 6585 1 6 1091 688 251 78 133 chr3 66440218 66440617 -93159166 + MTE2a LTR MaLR 3 379 0 6 1091 5799 85 5 9 chr3 66440642 66441440 -93158343 + L1VL4 LINE L1 193 991 -2568 6 1091 2389 74 29 3 chr3 66441440 66441752 -93158031 + L1_Mus2 LINE L1 6247 6566 0 6 1091 5274 69 11 40 chr3 66441752 66442392 -93157391 + L1VL4 LINE L1 992 1610 -1949 6 1091 6366 116 22 2 chr3 66442388 66443331 -93156452 + Lx2 LINE L1 5683 6644 -353 6 1091 1200 115 71 14 chr3 66443330 66443541 -93156242 + Lx2 LINE L1 6775 6997 0 6 1091 180 0 0 0 chr3 66443546 66443566 -93156217 + (TAA)n Simple_repeat Simple_repeat 2 21 0 6 1091 504 246 203 21 chr3 66443579 66443766 -93156017 + B4A SINE B4 1 221 -71 6 1091 5486 200 59 65 chr3 66443999 66445343 -93154440 + Lx9 LINE L1 6307 7641 -3 6 1091 418 222 148 16 chr3 66445348 66445476 -93154307 + B1_Mur1 SINE Alu 4 148 -1 6 1091 321 225 35 59 chr3 66445448 66445533 -93154250 + B4 SINE B4 196 278 -14 6 1091 308 24 24 0 chr3 66445537 66445578 -93154205 + (CA)n Simple_repeat Simple_repeat 1 42 0 6 1091 219 139 0 0 chr3 66446760 66446796 -93152987 + (CAG)n Simple_repeat Simple_repeat 1 36 0 6 1091 26 0 0 0 chr3 66448154 66448180 -93151603 + AT_rich Low_complexity Low_complexity 1 26 0 6 1091 765 261 43 33 chr3 66448196 66448406 -93151377 - B3 SINE B2 0 216 5 6 1091 180 0 0 0 chr3 66449369 66449389 -93150394 + (TATG)n Simple_repeat Simple_repeat 3 22 0 6 1091 329 247 0 12 chr3 66449806 66449888 -93149895 - MER58D DNA MER1_type -17 369 289 6 1091 503 303 89 13 chr3 66450299 66450523 -93149260 + RMER15 LTR ERVL 299 539 -36 6 1091 916 278 81 64 chr3 66451332 66451509 -93148274 + ORR1D2 LTR MaLR 6 185 -185 6 1091 483 18 0 0 chr3 66451509 66451565 -93148218 + (TC)n Simple_repeat Simple_repeat 1 56 0 6 1091 916 278 81 64 chr3 66451565 66451744 -93148039 + ORR1D2 LTR MaLR 186 368 -2 6 1091 1016 69 35 0 chr3 66452000 66452145 -93147638 + L1Md_F2 LINE L1 6433 6582 0 6 1091 2245 180 37 5 chr3 66452712 66453120 -93146663 + MTC LTR MaLR 1 421 0 6 1092 225 0 0 0 chr3 66453778 66453803 -93145980 + (TGAA)n Simple_repeat Simple_repeat 4 28 0 6 1092 270 0 0 0 chr3 66455357 66455387 -93144396 + (A)n Simple_repeat Simple_repeat 1 30 0 6 1092 279 79 0 0 chr3 66455576 66455614 -93144169 + (T)n Simple_repeat Simple_repeat 1 38 0 6 1092 415 305 75 20 chr3 66455684 66455885 -93143898 + MamRep434 DNA TcMar 2 213 -213 6 1092 709 147 0 134 chr3 66456720 66456877 -93142906 + B1_Mur3 SINE Alu 1 136 -13 6 1092 292 185 0 0 chr3 66459257 66459311 -93140472 + MER31A LTR ERV1 5 58 -408 6 1092 664 291 92 18 chr3 66459356 66459639 -93140144 + MER31A LTR ERV1 182 485 0 6 1092 532 229 37 50 chr3 66460072 66460233 -93139550 + RLTR14 LTR ERV1 224 382 0 6 1092 234 311 98 0 chr3 66463073 66463205 -93136578 + L2a LINE L2 2729 2873 -546 6 1092 199 307 75 50 chr3 66463440 66463560 -93136223 + L2a LINE L2 3300 3422 -4 6 1092 233 233 55 55 chr3 66463937 66464028 -93135755 - PB1D9 SINE Alu 0 120 30 6 1092 405 206 0 0 chr3 66464065 66464157 -93135626 + (CA)n Simple_repeat Simple_repeat 1 92 0 6 1092 994 245 32 29 chr3 66467937 66468218 -93131565 + MER121 Unknown Unknown 14 295 -117 6 1092 1246 94 67 0 chr3 66469440 66469620 -93130163 + B2_Mm2 SINE B2 2 193 -2 6 1092 1268 95 31 31 chr3 66469623 66469785 -93129998 + B2_Mm2 SINE B2 1 160 -35 6 1092 207 0 0 0 chr3 66469785 66469808 -93129975 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 6 1092 1268 95 31 31 chr3 66469808 66469840 -93129943 + B2_Mm2 SINE B2 161 195 0 6 1092 287 281 104 35 chr3 66470422 66470566 -93129217 - MIRb SINE MIR -28 240 87 6 1092 330 125 0 51 chr3 66470578 66470637 -93129146 + RMER30 DNA MER1_type 5 60 -142 6 1092 1960 236 23 9 chr3 66470644 66471080 -93128703 + Lx6 LINE L1 7018 7459 -1 6 1092 269 363 22 15 chr3 66471080 66471217 -93128566 + RMER30 DNA MER1_type 62 199 -3 6 1092 405 0 0 0 chr3 66471361 66471406 -93128377 + (TG)n Simple_repeat Simple_repeat 2 46 0 6 1092 503 319 7 7 chr3 66471817 66471959 -93127824 + B3 SINE B2 75 216 0 6 1092 518 256 274 24 chr3 66472260 66472640 -93127143 - RMER20B LTR ERVK -25 602 128 6 1092 384 350 94 48 chr3 66473032 66473615 -93126168 + L1M5 LINE L1 4229 4838 -1308 6 1092 37166 73 1 25 chr3 66473874 66480262 -93119521 + L1Md_T LINE L1 99 5586 -297 6 1092 8195 55 0 0 chr3 66480262 66481258 -93118525 + L1Md_T LINE L1 5587 6582 0 6 1092 564 84 0 0 chr3 66482109 66482192 -93117591 + (TG)n Simple_repeat Simple_repeat 2 84 0 6 1092 748 216 50 92 chr3 66482216 66482476 -93117307 - B4 SINE B4 0 292 44 6 1092 404 362 95 6 chr3 66483553 66483911 -93115872 + L1M5 LINE L1 5417 5806 -318 6 1092 433 253 71 133 chr3 66483956 66484152 -93115631 + B3A SINE B2 1 184 -11 6 1092 3111 78 22 14 chr3 66484192 66484279 -93115504 - Lx2A LINE L1 -999 6009 5928 6 1092 3497 25 2 2 chr3 66484279 66484675 -93115108 - MTA_Mm LTR MaLR 0 396 1 6 1092 3371 78 22 14 chr3 66484675 66484915 -93114868 - Lx2A LINE L1 -1081 5927 5688 6 1092 435 19 0 0 chr3 66484915 66484967 -93114816 + (CATA)n Simple_repeat Simple_repeat 2 53 0 6 1092 3371 162 16 2 chr3 66484967 66485326 -93114457 - Lx2A LINE L1 -196 5687 5321 6 1092 5255 134 25 84 chr3 66485325 66486335 -93113448 + Lx2A LINE L1 6019 6968 -40 6 1092 225 114 22 22 chr3 66486333 66486378 -93113405 + Lx2A LINE L1 6922 6966 -42 6 1092 510 58 11 55 chr3 66486378 66486469 -93113314 + Lx2A LINE L1 6922 7008 0 6 1092 207 340 89 40 chr3 66486890 66486991 -93112792 + MIRb SINE MIR 115 220 -48 6 1092 267 114 0 0 chr3 66488862 66488906 -93110877 + (TG)n Simple_repeat Simple_repeat 1 44 0 6 1092 191 62 62 0 chr3 66488934 66488966 -93110817 + (CAGAGA)n Simple_repeat Simple_repeat 3 36 0 6 1092 216 204 185 0 chr3 66489642 66489696 -93110087 - ID4_ SINE ID -9 74 11 6 1092 431 387 63 26 chr3 66489926 66490194 -93109589 - MER45C DNA Tip100 -358 595 318 6 1092 526 297 74 7 chr3 66490364 66490513 -93109270 + B4A SINE B4 52 210 -82 6 1092 405 0 0 0 chr3 66490516 66490561 -93109222 + (GA)n Simple_repeat Simple_repeat 2 46 0 6 1092 1813 324 81 53 chr3 66490561 66491503 -93108280 + Lx8 LINE L1 6414 7381 -92 6 1092 297 75 0 0 chr3 66491532 66491572 -93108211 + (TG)n Simple_repeat Simple_repeat 2 41 0 6 1092 27 0 0 0 chr3 66491594 66491621 -93108162 + AT_rich Low_complexity Low_complexity 1 27 0 6 1092 591 275 22 76 chr3 66491770 66491955 -93107828 - MER45C DNA Tip100 -757 196 22 6 1092 265 311 43 22 chr3 66492121 66492259 -93107524 - MIRb SINE MIR -16 252 112 6 1092 1856 165 108 3 chr3 66492267 66492601 -93107182 + ORR1D1 LTR MaLR 2 370 -4 6 1092 285 146 0 0 chr3 66492814 66492862 -93106921 + (A)n Simple_repeat Simple_repeat 1 48 0 6 1092 203 279 29 0 chr3 66493455 66493523 -93106260 + MIRc SINE MIR 29 98 -170 6 1092 209 339 0 0 chr3 66493582 66493644 -93106139 + MIRb SINE MIR 28 89 -179 6 1092 216 265 26 105 chr3 66494001 66494077 -93105706 + ID4_ SINE ID 14 83 0 6 1092 203 32 0 61 chr3 66494735 66494768 -93105015 + (GAAA)n Simple_repeat Simple_repeat 2 32 0 6 1092 204 135 0 0 chr3 66496123 66496160 -93103623 + (TCTCTG)n Simple_repeat Simple_repeat 6 42 0 6 1092 21 0 0 0 chr3 66496319 66496340 -93103443 + AT_rich Low_complexity Low_complexity 1 21 0 6 1092 282 284 25 0 chr3 66497002 66497083 -93102700 - MER5B DNA MER1_type -23 155 73 6 1092 628 277 11 31 chr3 66497085 66497372 -93102411 + L1MC5 LINE L1 7646 7926 -35 6 1092 23 33 0 0 chr3 66498801 66498831 -93100952 + AT_rich Low_complexity Low_complexity 1 30 0 6 1092 252 122 0 0 chr3 66498926 66498967 -93100816 + (TG)n Simple_repeat Simple_repeat 2 42 0 6 1092 32 75 0 0 chr3 66500729 66500796 -93098987 + AT_rich Low_complexity Low_complexity 1 67 0 1 1092 26 0 0 0 chr3 66500981 66501007 -93098776 + AT_rich Low_complexity Low_complexity 1 26 0 2 1092 360 0 0 0 chr3 66502383 66502423 -93097360 + (CA)n Simple_repeat Simple_repeat 1 40 0 3 1092 300 362 122 5 chr3 66503021 66503210 -93096573 - MLT1J-int LTR MaLR -378 1009 799 4 1092 363 324 36 36 chr3 66504248 66504360 -93095423 - MER81 DNA AcHobo -2 112 1 5 1092 21 0 0 0 chr3 66505100 66505121 -93094662 + AT_rich Low_complexity Low_complexity 1 21 0 6 1092 561 83 0 0 chr3 66505947 66506031 -93093752 + (TC)n Simple_repeat Simple_repeat 2 85 0 7 1092 857 338 154 27 chr3 66507611 66508463 -93091320 + L2a LINE L2 1813 2772 -647 8 1092 352 356 90 17 chr3 66508514 66508748 -93091035 + L2a LINE L2 2964 3214 -212 8 1092 184 315 19 0 chr3 66511867 66511921 -93087862 + MIRb SINE MIR 176 230 -38 9 1092 22290 23 0 0 chr3 66512010 66514754 -93085029 + L1Md_T LINE L1 2844 5586 -297 1 1092 9038 5 0 0 chr3 66514754 66515750 -93084033 + L1Md_T LINE L1 5587 6582 0 1 1092 7189 68 5 2 chr3 66515806 66516980 -93082803 - L1_Mus1 LINE L1 -1 6566 5388 1 1092 412 397 81 42 chr3 66517583 66517964 -93081819 + MLT1N2 LTR MaLR 62 457 -105 1 1092 22 0 0 0 chr3 66518254 66518276 -93081507 + AT_rich Low_complexity Low_complexity 1 22 0 1 1092 22 0 0 0 chr3 66519735 66519757 -93080026 + AT_rich Low_complexity Low_complexity 1 22 0 1 1092 80 53 0 19 chr3 66519917 66520072 -93079711 + AT_rich Low_complexity Low_complexity 1 152 0 1 1092 2030 255 48 18 chr3 66520126 66520744 -93079039 + Lx8 LINE L1 6495 7131 -342 1 1092 206 162 111 12 chr3 66520866 66520947 -93078836 + (CATATA)n Simple_repeat Simple_repeat 2 90 0 1 1092 227 138 33 33 chr3 66520868 66520928 -93078855 + (TATAA)n Simple_repeat Simple_repeat 5 64 0 1 1092 432 0 0 0 chr3 66520965 66521013 -93078770 + (GA)n Simple_repeat Simple_repeat 1 48 0 1 1092 370 341 35 47 chr3 66521151 66521323 -93078460 + MIRb SINE MIR 6 175 -93 2 1092 647 84 0 10 chr3 66522355 66522451 -93077332 + (GGGA)n Simple_repeat Simple_repeat 3 97 0 2 1092 30 0 0 0 chr3 66523724 66523754 -93076029 + AT_rich Low_complexity Low_complexity 1 30 0 2 1092 599 100 0 9 chr3 66524209 66524320 -93075463 + (TAGA)n Simple_repeat Simple_repeat 3 112 0 2 1092 1307 238 162 3 chr3 66524324 66524670 -93075113 + MTD LTR MaLR 19 419 0 2 1092 288 286 14 0 chr3 66525148 66525218 -93074565 - LTR33B LTR ERVL -3 500 430 2 1092 496 345 68 8 chr3 66525242 66525490 -93074293 - LTR33B LTR ERVL -148 355 93 2 1092 26 50 0 0 chr3 66525581 66525621 -93074162 + AT_rich Low_complexity Low_complexity 1 40 0 2 1092 370 316 34 81 chr3 66525667 66525815 -93073968 + B4A SINE B4 2 142 -150 2 1092 486 0 0 0 chr3 66525900 66525954 -93073829 + (TC)n Simple_repeat Simple_repeat 1 54 0 2 1092 22 70 0 0 chr3 66526329 66526372 -93073411 + AT_rich Low_complexity Low_complexity 1 43 0 2 1092 1433 38 0 23 chr3 66526626 66527141 -93072642 + (TG)n Simple_repeat Simple_repeat 1 503 0 3 1092 389 294 64 28 chr3 66528535 66529253 -93070530 + L1M2 LINE L1 2139 2822 -4027 3 1092 635 284 19 0 chr3 66529382 66529537 -93070246 + RSINE1 SINE B4 4 161 -4 3 1092 257 208 81 30 chr3 66529540 66529639 -93070144 + L1M2 LINE L1 4239 4342 -2237 3 1092 527 294 66 44 chr3 66529674 66530083 -93069700 + L1MA4A LINE L1 5304 5721 -570 3 1092 1750 174 51 3 chr3 66530111 66530446 -93069337 + ORR1B1 LTR MaLR 1 351 -43 3 1092 7143 113 28 4 chr3 66530447 66531624 -93068159 - L1_Mur1 LINE L1 -718 5168 3964 3 1092 4228 148 22 13 chr3 66531625 66532339 -93067444 + Lx3B LINE L1 6247 6967 -6 3 1092 438 20 0 0 chr3 66532361 66532412 -93067371 + (TTCC)n Simple_repeat Simple_repeat 3 53 0 3 1092 1629 16 21 0 chr3 66532443 66532632 -93067151 + B2_Mm1a SINE B2 1 193 0 3 1092 298 98 98 0 chr3 66532639 66532690 -93067093 + ORR1A4 LTR MaLR 274 329 0 3 1092 391 276 31 0 chr3 66532710 66532837 -93066946 + L1MA4A LINE L1 5787 5917 -386 3 1092 357 24 0 0 chr3 66532863 66532905 -93066878 + (TC)n Simple_repeat Simple_repeat 2 43 0 4 1092 234 0 0 0 chr3 66532905 66532930 -93066853 + (TG)n Simple_repeat Simple_repeat 1 26 0 4 1092 792 21 0 0 chr3 66533536 66533630 -93066153 + (TC)n Simple_repeat Simple_repeat 1 94 0 4 1092 438 372 58 36 chr3 66533701 66534030 -93065753 - L3 LINE CR1 -637 3852 3517 4 1092 190 347 52 10 chr3 66534053 66534149 -93065634 - L3 LINE CR1 -1070 3419 3320 4 1092 336 193 0 0 chr3 66534493 66534550 -93065233 + MER103 DNA DNA 65 121 -45 4 1092 402 284 67 55 chr3 66534885 66535049 -93064734 + MIRc SINE MIR 64 229 -39 4 1092 334 356 94 22 chr3 66536256 66536480 -93063303 - MLT1G1 LTR MaLR -177 402 163 4 1092 225 0 0 0 chr3 66536480 66536505 -93063278 + (A)n Simple_repeat Simple_repeat 1 25 0 4 1092 613 105 21 0 chr3 66536931 66537026 -93062757 - URR1B DNA MER1_type 0 225 129 4 1092 670 64 0 0 chr3 66537026 66537120 -93062663 - L1Md_A LINE L1 -614 5968 5875 4 1092 278 271 55 39 chr3 66537120 66537169 -93062614 + CYRA11_Mm Unknown Y-chromosome 196 242 -375 5 1092 5015 35 0 3 chr3 66537169 66537769 -93062014 + L1Md_F3 LINE L1 5986 6583 -1 5 1092 278 271 55 39 chr3 66537769 66537846 -93061937 + CYRA11_Mm Unknown Y-chromosome 243 323 -294 5 1092 651 148 189 0 chr3 66537772 66537894 -93061889 - URR1B DNA MER1_type -80 145 1 4 1092 284 364 48 27 chr3 66539039 66539186 -93060597 - L2b LINE L2 -1 3374 3225 5 1092 21 0 0 0 chr3 66539194 66539215 -93060568 + AT_rich Low_complexity Low_complexity 1 21 0 5 1092 308 245 12 0 chr3 66540249 66540339 -93059444 - ID4_ SINE ID -55 97 3 5 1092 1915 202 32 15 chr3 66540559 66540966 -93058817 - Lx5 LINE L1 0 7050 6637 5 1092 1230 100 0 0 chr3 66541297 66541477 -93058306 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 5 1092 282 309 113 65 chr3 66542148 66542488 -93057295 + MLT1I LTR MaLR 50 411 0 5 1092 323 358 0 7 chr3 66544420 66544558 -93055225 + (TATG)n Simple_repeat Simple_repeat 1 137 0 5 1092 349 348 24 0 chr3 66544595 66544759 -93055024 + (TATG)n Simple_repeat Simple_repeat 1 168 0 5 1092 297 0 0 0 chr3 66544770 66544803 -93054980 + (TG)n Simple_repeat Simple_repeat 1 33 0 5 1092 496 300 65 8 chr3 66544806 66544960 -93054823 - B4A SINE B4 -25 267 100 6 1092 322 242 67 95 chr3 66544887 66544992 -93054791 + MLT1J LTR MaLR 72 173 -339 6 1092 426 20 0 0 chr3 66545734 66545785 -93053998 + (CA)n Simple_repeat Simple_repeat 2 52 0 6 1092 564 116 0 0 chr3 66546016 66546102 -93053681 + (GGA)n Simple_repeat Simple_repeat 1 86 0 6 1092 612 237 14 49 chr3 66546245 66546387 -93053396 + ID_B1 SINE B4 88 224 0 6 1092 380 315 81 70 chr3 66546464 66546737 -93053046 - MER46C DNA MER2_type -62 276 1 6 1092 411 316 15 8 chr3 66546924 66547099 -93052684 - MIR SINE MIR -6 262 83 6 1092 189 0 0 0 chr3 66547179 66547200 -93052583 + (TTTG)n Simple_repeat Simple_repeat 1 21 0 6 1092 21 0 0 0 chr3 66549764 66549785 -93049998 + AT_rich Low_complexity Low_complexity 1 21 0 6 1092 238 324 107 7 chr3 66551723 66551863 -93047920 + MER102b DNA MER1_type 1 154 -187 6 1092 235 234 31 41 chr3 66552037 66552135 -93047648 - Lx8 LINE L1 -3 7470 7374 7 1092 241 315 14 0 chr3 66552236 66552309 -93047474 + ID4 SINE ID 1 74 -9 7 1092 351 0 0 0 chr3 66552311 66552350 -93047433 + (CAA)n Simple_repeat Simple_repeat 2 40 0 7 1092 225 94 0 0 chr3 66552479 66552511 -93047272 + (GGA)n Simple_repeat Simple_repeat 2 33 0 7 1092 596 231 50 15 chr3 66553450 66553648 -93046135 + Lx7 LINE L1 625 829 -6899 7 1092 8114 192 68 75 chr3 66554025 66556988 -93042795 + Lx7 LINE L1 857 3814 -2066 7 1092 5805 193 82 74 chr3 66556984 66557480 -93042303 + Lx7 LINE L1 4108 4620 -1260 7 1092 2049 176 8 8 chr3 66557480 66557847 -93041936 - ORR1B2 LTR MaLR 0 367 1 7 1092 426 39 0 0 chr3 66557856 66557908 -93041875 + (CA)n Simple_repeat Simple_repeat 1 52 0 7 1092 5805 193 82 74 chr3 66557908 66557943 -93041840 + Lx7 LINE L1 4621 4627 -1253 7 1092 288 0 0 0 chr3 66557943 66557975 -93041808 + (TC)n Simple_repeat Simple_repeat 1 32 0 7 1092 345 47 0 0 chr3 66557975 66558017 -93041766 + (CA)n Simple_repeat Simple_repeat 1 43 0 7 1092 5805 193 82 74 chr3 66558017 66558071 -93041712 + Lx7 LINE L1 4628 4636 -1244 7 1092 207 100 0 0 chr3 66558071 66558101 -93041682 + (CA)n Simple_repeat Simple_repeat 1 30 0 7 1092 5805 193 82 74 chr3 66558101 66558680 -93041103 + Lx7 LINE L1 4637 5249 -631 7 1092 207 0 0 0 chr3 66558680 66558703 -93041080 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 8 1092 5805 183 51 39 chr3 66558703 66559348 -93040435 + Lx7 LINE L1 5250 5948 -1748 7 1092 818 250 80 55 chr3 66560153 66560390 -93039393 + Lx7 LINE L1 7079 7321 -152 7 1092 284 224 16 49 chr3 66560485 66560546 -93039237 - ID4_ SINE ID -3 80 22 8 1092 26 50 0 0 chr3 66560714 66560754 -93039029 + AT_rich Low_complexity Low_complexity 1 40 0 8 1092 393 117 0 0 chr3 66561283 66561343 -93038440 + (TA)n Simple_repeat Simple_repeat 2 61 0 8 1092 989 206 169 75 chr3 66563085 66563424 -93036359 - MTD LTR MaLR -2 417 40 8 1092 456 19 0 0 chr3 66564836 66564889 -93034894 + (GA)n Simple_repeat Simple_repeat 2 54 0 8 1092 288 0 0 0 chr3 66565320 66565352 -93034431 + (CA)n Simple_repeat Simple_repeat 2 33 0 8 1092 1182 253 80 70 chr3 66565564 66566218 -93033565 - L1MC4 LINE L1 -367 7675 7016 8 1092 816 245 0 0 chr3 66566532 66566691 -93033092 + RSINE1 SINE B4 3 161 -4 8 1092 423 38 0 0 chr3 66566767 66566820 -93032963 + (CA)n Simple_repeat Simple_repeat 1 53 0 8 1092 1196 170 108 0 chr3 66566905 66567211 -93032572 - Lx9 LINE L1 0 7644 7306 9 1092 548 278 129 16 chr3 66569263 66569457 -93030326 + B4A SINE B4 16 231 -61 9 1092 448 315 43 4 chr3 66569555 66569788 -93029995 + L1ME4a LINE L1 5604 5845 -279 9 1092 324 268 30 20 chr3 66570727 66570826 -93028957 + PB1D10 SINE Alu 4 103 -14 9 1092 22 0 0 0 chr3 66570910 66570932 -93028851 + AT_rich Low_complexity Low_complexity 1 22 0 9 1092 243 88 0 0 chr3 66571859 66571893 -93027890 + (TTG)n Simple_repeat Simple_repeat 2 35 0 9 1092 1194 78 0 0 chr3 66572192 66572359 -93027424 + (TG)n Simple_repeat Simple_repeat 2 168 0 9 1092 503 277 46 20 chr3 66572366 66572517 -93027266 - RSINE1 SINE B4 -10 155 1 9 1092 22 0 0 0 chr3 66572906 66572928 -93026855 + AT_rich Low_complexity Low_complexity 1 22 0 9 1092 489 302 23 14 chr3 66573137 66573355 -93026428 + L1M5 LINE L1 4944 5163 -983 9 1092 505 237 299 29 chr3 66573374 66573578 -93026205 + B4A SINE B4 14 272 -20 1 1092 216 0 0 0 chr3 66573581 66573605 -93026178 + (TC)n Simple_repeat Simple_repeat 1 24 0 1 1092 231 33 0 0 chr3 66573796 66573805 -93025978 + (TA)n Simple_repeat Simple_repeat 1 9 0 1 1092 384 22 0 0 chr3 66573805 66573850 -93025933 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 1092 231 33 0 0 chr3 66573850 66573870 -93025913 + (TA)n Simple_repeat Simple_repeat 1 20 0 1 1092 286 271 20 79 chr3 66573872 66574024 -93025759 + L1M5 LINE L1 5360 5502 -676 9 1092 329 318 114 21 chr3 66574046 66574239 -93025544 + L1ME3 LINE L1 5762 5972 -190 1 1092 764 288 12 33 chr3 66574398 66574639 -93025144 - LTR81A LTR ERV1? -1114 236 1 1 1092 647 244 155 91 chr3 66575022 66575274 -93024509 + B4A SINE B4 15 282 -10 1 1092 1123 267 68 46 chr3 66575294 66575728 -93024055 - L1MA7 LINE L1 -4 6287 5835 1 1092 3259 40 5 17 chr3 66575728 66576133 -93023650 + MTB LTR MaLR 1 400 0 1 1092 1123 267 68 46 chr3 66576133 66576260 -93023523 - L1MA7 LINE L1 -457 5834 5714 1 1092 188 182 0 22 chr3 66576551 66576596 -93023187 + GA-rich Low_complexity Low_complexity 3 46 0 1 1092 190 222 77 31 chr3 66576627 66576692 -93023091 - L3b LINE CR1 -237 245 178 1 1092 348 327 39 18 chr3 66576932 66577097 -93022686 + MIR SINE MIR 2 160 -48 1 1092 558 301 103 0 chr3 66577232 66577301 -93022482 + B4 SINE B4 5 88 -204 1 1092 249 359 146 0 chr3 66577301 66577404 -93022379 + PB1D9 SINE Alu 1 118 -2 1 1092 438 276 84 58 chr3 66577409 66577563 -93022220 + RSINE1 SINE B4 2 159 -6 1 1092 226 319 56 28 chr3 66577639 66577710 -93022073 + RSINE1 SINE B4 93 165 0 1 1092 294 29 0 0 chr3 66577779 66577814 -93021969 + (TAA)n Simple_repeat Simple_repeat 2 36 0 1 1092 338 240 10 20 chr3 66577906 66578004 -93021779 - Lx9 LINE L1 -821 6823 6727 1 1092 228 205 2 0 chr3 66578042 66578095 -93021688 + PB1D7 SINE Alu 10 65 -52 1 1092 244 244 81 11 chr3 66578817 66578904 -93020879 - LTR40b LTR ERVL -24 438 346 1 1092 374 36 36 0 chr3 66579095 66579150 -93020633 + (TTTAG)n Simple_repeat Simple_repeat 1 57 0 1 1092 650 296 22 90 chr3 66579150 66579216 -93020567 - ID_B1 SINE B4 -16 208 157 1 1092 1076 51 22 28 chr3 66579216 66579396 -93020387 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 1 1092 1130 68 0 20 chr3 66579396 66579407 -93020376 - B1_Mus1 SINE Alu -1 147 139 1 1092 279 0 0 0 chr3 66579407 66579438 -93020345 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1 1092 1130 68 0 20 chr3 66579438 66579575 -93020208 - B1_Mus1 SINE Alu -10 138 2 1 1092 650 296 22 90 chr3 66579575 66579730 -93020053 - ID_B1 SINE B4 -68 156 2 1 1092 279 133 0 0 chr3 66579730 66579775 -93020008 + (TTTCC)n Simple_repeat Simple_repeat 5 49 0 1 1092 205 344 60 24 chr3 66580051 66580218 -93019565 + L2 LINE L2 2563 2735 -684 1 136 29900 96 4 13 chr3 66580276 66585628 -93014155 - L1_Mus1 LINE L1 -2 6565 1264 1 1093 387 0 0 0 chr3 66585628 66585671 -93014112 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 1093 29900 134 52 16 chr3 66585671 66585959 -93013824 - L1_Mus1 LINE L1 -4620 1263 960 1 1093 1369 39 6 6 chr3 66585959 66586141 -93013642 - L1Md_F2 LINE L1 -1 6581 6400 1 1093 4351 143 64 16 chr3 66586141 66586689 -93013094 - L1_Mus1 LINE L1 -5657 959 387 1 1093 2768 101 8 10 chr3 66587893 66588294 -93011489 + MTB LTR MaLR 1 400 0 1 1093 695 328 81 46 chr3 66590536 66590907 -93008876 - LTR40b LTR ERVL 0 462 79 1 1093 510 17 0 0 chr3 66590915 66590974 -93008809 + (TAGA)n Simple_repeat Simple_repeat 3 61 0 1 1093 1038 83 21 0 chr3 66591294 66591438 -93008345 - B1_Mus2 SINE Alu 0 147 1 1 1093 444 188 7 15 chr3 66591966 66592101 -93007682 + GA-rich Low_complexity Low_complexity 1 134 0 1 1093 275 104 21 0 chr3 66592101 66592149 -93007634 + (TGG)n Simple_repeat Simple_repeat 1 49 0 1 1093 4187 28 22 2 chr3 66592419 66592926 -93006857 + L1Md_F3 LINE L1 6054 6570 -14 1 1093 374 353 119 30 chr3 66593512 66593941 -93005842 - L2a LINE L2 -9 3417 2951 1 1093 210 71 0 0 chr3 66594016 66594044 -93005739 + (CTG)n Simple_repeat Simple_repeat 2 29 0 1 1093 4158 212 56 74 chr3 66594143 66595213 -93004570 - RMER1B Other Other 0 1066 16 1 1093 216 356 11 32 chr3 66596390 66596483 -93003300 + L2 LINE L2 2649 2739 -680 1 1093 21 0 0 0 chr3 66596939 66596960 -93002823 + AT_rich Low_complexity Low_complexity 1 21 0 1 1093 306 0 0 0 chr3 66597687 66597721 -93002062 + (TTA)n Simple_repeat Simple_repeat 2 35 0 1 1093 3662 76 2 0 chr3 66597819 66598293 -93001490 - L1_Mus1 LINE L1 -7 6560 6086 1 1093 1561 143 66 38 chr3 66598547 66598867 -93000916 + ORR1A4 LTR MaLR 1 329 0 1 1093 335 164 0 0 chr3 66598867 66598922 -93000861 + ORR1A4-int LTR MaLR 1 55 -1454 1 1093 396 40 0 0 chr3 66598941 66598991 -93000792 + (TTGG)n Simple_repeat Simple_repeat 2 51 0 1 1093 220 27 54 0 chr3 66598995 66599032 -93000751 + (TTG)n Simple_repeat Simple_repeat 2 40 0 1 1093 3306 156 87 2 chr3 66599051 66599637 -93000146 + ORR1A4-int LTR MaLR 69 704 -1259 1 1093 276 273 52 0 chr3 66599580 66599657 -93000126 + MT2_Mm LTR ERVL 35 115 -378 1 1093 3846 151 63 13 chr3 66599657 66600651 -92999132 + Lx2B LINE L1 5339 6384 -616 1 1093 392 243 14 22 chr3 66600647 66600786 -92998997 + Lx2B LINE L1 6862 6999 -1 1 1093 43 20 0 0 chr3 66601088 66601138 -92998645 + AT_rich Low_complexity Low_complexity 1 50 0 1 1093 21 0 0 0 chr3 66602641 66602662 -92997121 + AT_rich Low_complexity Low_complexity 1 21 0 1 1093 261 0 0 0 chr3 66603561 66603590 -92996193 + (TG)n Simple_repeat Simple_repeat 1 29 0 1 1093 2775 128 30 0 chr3 66603865 66604293 -92995490 - BGLII_B LTR ERVK 0 441 1 1 1093 2424 145 44 4 chr3 66604293 66604771 -92995012 - MYSERV16_I-int LTR ERVK 0 2326 1830 1 1093 343 113 16 0 chr3 66604808 66604870 -92994913 + Lx9 LINE L1 7581 7643 -1 1 1093 300 320 0 26 chr3 66605089 66605166 -92994617 - PB1D7 SINE Alu -10 110 36 1 1093 896 214 104 0 chr3 66605316 66605508 -92994275 + B3 SINE B2 1 212 -4 1 1093 191 372 167 0 chr3 66605529 66605631 -92994152 + MIR SINE MIR 57 175 -87 1 1093 426 258 232 30 chr3 66606575 66606743 -92993040 + ID_B1 SINE B4 4 205 -19 1 1093 1958 201 27 14 chr3 66607542 66607931 -92991852 + MTD LTR MaLR 1 376 -43 1 1093 304 332 89 85 chr3 66608419 66608689 -92991094 - B4A SINE B4 -21 271 1 1 1093 284 310 0 14 chr3 66609342 66609414 -92990369 - MLT1K LTR MaLR -331 264 194 1 1093 658 212 94 109 chr3 66609603 66609778 -92990005 + B3A SINE B2 1 174 -24 1 1093 297 118 0 0 chr3 66609778 66609829 -92989954 + (CAGA)n Simple_repeat Simple_repeat 4 54 0 1 1093 658 212 94 109 chr3 66609829 66609854 -92989929 + B3A SINE B2 175 198 0 1 1093 290 370 29 20 chr3 66611116 66611218 -92988565 + B1F2 SINE Alu 1 103 -46 1 1093 381 182 0 0 chr3 66611263 66611330 -92988453 + CT-rich Low_complexity Low_complexity 13 79 0 1 1093 1178 94 0 22 chr3 66611330 66611514 -92988269 + (TTC)n Simple_repeat Simple_repeat 1 180 0 1 1093 372 43 0 0 chr3 66611523 66611569 -92988214 + (TC)n Simple_repeat Simple_repeat 1 46 0 1 1093 180 0 0 0 chr3 66611569 66611588 -92988195 + (CA)n Simple_repeat Simple_repeat 1 20 0 1 1093 25 0 0 0 chr3 66612220 66612245 -92987538 + AT_rich Low_complexity Low_complexity 1 25 0 1 1093 2390 284 85 45 chr3 66612247 66612730 -92987053 - Lx8 LINE L1 -28 7445 6960 1 1093 339 44 0 0 chr3 66612730 66612775 -92987008 + (TG)n Simple_repeat Simple_repeat 1 45 0 1 1093 486 0 0 0 chr3 66612775 66612828 -92986955 + (GA)n Simple_repeat Simple_repeat 1 54 0 1 1093 2390 284 85 45 chr3 66612828 66613022 -92986761 - Lx8 LINE L1 -514 6959 6748 1 1093 279 0 0 0 chr3 66613022 66613053 -92986730 + (TAA)n Simple_repeat Simple_repeat 2 32 0 1 1093 2390 284 85 45 chr3 66613053 66613371 -92986412 - Lx8 LINE L1 -726 6747 6410 1 1093 636 92 64 0 chr3 66613408 66613549 -92986234 + CT-rich Low_complexity Low_complexity 1 150 0 1 1093 405 0 0 0 chr3 66614171 66614216 -92985567 + (TG)n Simple_repeat Simple_repeat 1 45 0 1 1093 29 0 0 0 chr3 66616183 66616212 -92983571 + AT_rich Low_complexity Low_complexity 1 29 0 1 1093 264 91 0 0 chr3 66616932 66616976 -92982807 + (A)n Simple_repeat Simple_repeat 1 44 0 1 1093 1178 61 0 16 chr3 66618912 66619094 -92980689 + (TCTCCC)n Simple_repeat Simple_repeat 2 180 0 1 1093 219 265 0 0 chr3 66619094 66619143 -92980640 + CT-rich Low_complexity Low_complexity 3 51 0 1 1093 328 279 0 79 chr3 66619152 66619253 -92980530 - PB1D10 SINE Alu -18 99 7 1 1093 220 292 52 10 chr3 66619386 66619483 -92980300 - MIRb SINE MIR -47 221 121 1 1093 499 263 36 14 chr3 66620172 66620311 -92979472 + B1F2 SINE Alu 1 142 -7 1 1093 750 230 7 0 chr3 66620868 66621007 -92978776 + B1_Mur4 SINE Alu 9 148 -2 1 1093 7195 144 15 17 chr3 66621066 66622488 -92977295 + Lx2 LINE L1 5485 6799 -198 1 1093 302 349 74 0 chr3 66622564 66622713 -92977070 + L1ME2 LINE L1 5790 5949 -215 1 1093 225 288 143 55 chr3 66622976 66623193 -92976590 - RMER2 LTR ERV1 0 567 332 1 1093 572 158 64 6 chr3 66623767 66623939 -92975844 - Lx9 LINE L1 -1 7643 7462 1 1093 340 143 47 16 chr3 66623940 66624068 -92975715 + (TA)n Simple_repeat Simple_repeat 2 133 0 1 1093 216 0 0 0 chr3 66624379 66624403 -92975380 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1 1093 193 265 20 0 chr3 66625913 66625962 -92973821 + MER5A DNA MER1_type 2 51 -138 1 1093 436 32 0 31 chr3 66625967 66626031 -92973752 + (CA)n Simple_repeat Simple_repeat 2 63 0 1 1093 6088 46 0 0 chr3 66626052 66626787 -92972996 + L1Md_T LINE L1 5848 6582 0 1 1093 295 293 12 24 chr3 66626898 66626982 -92972801 - MTD LTR MaLR -276 143 61 1 1093 1140 189 204 42 chr3 66626915 66627000 -92972783 + MTD LTR MaLR 61 142 -277 1 1093 4289 94 24 2 chr3 66627000 66627584 -92972199 + MT2B LTR ERVL 1 597 -4 1 1093 1140 189 204 42 chr3 66627584 66627807 -92971976 + MTD LTR MaLR 143 419 0 1 1093 498 365 134 23 chr3 66627980 66628270 -92971513 + LTR33 LTR ERVL 24 315 -205 1 1093 246 32 0 0 chr3 66628679 66628710 -92971073 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1 1093 264 263 102 167 chr3 66628839 66629269 -92970514 - RMER10A LTR ERVL -23 419 18 1 1093 314 314 91 62 chr3 66630590 66630839 -92968944 + MIRb SINE MIR 1 259 -3 1 1093 1257 280 98 16 chr3 66631202 66631631 -92968152 + Lx6 LINE L1 6995 7458 -2 2 1093 227 342 39 3 chr3 66631685 66631785 -92967998 - MIRc SINE MIR -142 126 25 2 1093 232 354 113 19 chr3 66632345 66632558 -92967225 - MIRb SINE MIR -16 252 20 2 1093 236 255 0 0 chr3 66632931 66632982 -92966801 + MIRc SINE MIR 88 138 -130 2 1093 289 286 36 0 chr3 66634407 66634491 -92965292 - MTD LTR MaLR -132 268 182 2 1093 222 37 0 0 chr3 66634512 66634539 -92965244 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2 1093 1742 161 85 3 chr3 66634539 66634857 -92964926 - Lx4A LINE L1 -6 7052 6709 2 1093 820 176 0 0 chr3 66634857 66635005 -92964778 + Lx4A LINE L1 6558 6705 -353 2 1093 5406 133 12 11 chr3 66635007 66636043 -92963740 + Lx LINE L1 4885 5918 -736 2 1093 733 233 78 16 chr3 66636044 66636236 -92963547 - MTD LTR MaLR -215 204 1 2 1093 264 221 46 11 chr3 66636360 66636447 -92963336 - L1MB7 LINE L1 -15 6169 6080 2 1093 656 332 28 14 chr3 66636625 66636842 -92962941 + MLT1C LTR MaLR 204 423 -44 2 1093 225 118 20 0 chr3 66636926 66636977 -92962806 - MT2A LTR ERVL -2 531 480 2 1093 427 216 32 65 chr3 66637045 66637169 -92962614 + MTC-int LTR MaLR 676 795 -463 2 1093 551 68 0 0 chr3 66637162 66637235 -92962548 - MTC-int LTR MaLR -521 737 665 2 1093 1401 153 34 55 chr3 66637228 66637519 -92962264 - MTC-int LTR MaLR -969 289 5 2 1093 2295 144 60 12 chr3 66637521 66637923 -92961860 - MTC LTR MaLR 0 421 1 2 1093 448 258 111 2 chr3 66637938 66638254 -92961529 - L1M4c LINE L1 -3716 2928 2569 2 1093 278 255 121 48 chr3 66638315 66638482 -92961301 - L1M4c LINE L1 -6289 253 83 2 1093 1128 63 0 7 chr3 66638482 66638618 -92961165 + B1_Mus2 SINE Alu 1 136 -11 2 1093 206 32 0 31 chr3 66638618 66638650 -92961133 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 2 1093 278 255 121 48 chr3 66638656 66638694 -92961089 - L1M4c LINE L1 -6460 82 33 2 1093 528 344 94 70 chr3 66638808 66638987 -92960796 - MLT1E2 LTR MaLR -6 621 442 2 1093 2635 35 0 0 chr3 66638987 66639300 -92960483 - L1Md_T LINE L1 0 6582 6270 2 1093 528 344 94 70 chr3 66639300 66639461 -92960322 - MLT1E2 LTR MaLR -186 441 273 2 1093 5133 176 18 27 chr3 66639654 66640971 -92958812 + L1Md_T LINE L1 99 1205 -5411 2 1093 34704 32 0 0 chr3 66640977 66645393 -92954390 + L1Md_T LINE L1 1170 5586 -297 2 1093 8020 56 0 0 chr3 66645393 66646389 -92953394 + L1Md_T LINE L1 5587 6582 0 2 1093 195 306 0 0 chr3 66646392 66646441 -92953342 - MIR SINE MIR -125 83 35 2 1093 245 330 121 0 chr3 66646553 66646644 -92953139 - MIR3 SINE MIR -2 206 105 2 1093 1598 174 40 0 chr3 66647622 66647898 -92951885 - MTC LTR MaLR -88 333 47 2 1093 7139 65 16 9 chr3 66647900 66649189 -92950594 + L1_Mus1 LINE L1 5266 6567 0 2 1093 1126 61 7 7 chr3 66649236 66649384 -92950399 + B1_Mus1 SINE Alu 1 148 0 2 1093 189 0 0 0 chr3 66649387 66649408 -92950375 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 2 1093 31 0 0 0 chr3 66649408 66649439 -92950344 + AT_rich Low_complexity Low_complexity 1 31 0 2 1093 396 0 0 0 chr3 66649492 66649536 -92950247 + (TG)n Simple_repeat Simple_repeat 2 45 0 2 1093 446 180 10 0 chr3 66651034 66651134 -92948649 + GA-rich Low_complexity Low_complexity 1 101 0 2 1093 285 279 239 1 chr3 66651804 66651929 -92947854 + MIRm SINE MIR 21 176 -100 2 1093 643 234 93 130 chr3 66653137 66653383 -92946400 + B4A SINE B4 1 237 -55 2 1093 1063 135 247 4 chr3 66653383 66653614 -92946169 + Lx4A LINE L1 6769 7055 -3 2 1093 22 0 0 0 chr3 66653854 66653876 -92945907 + AT_rich Low_complexity Low_complexity 1 22 0 2 1093 589 261 123 108 chr3 66654480 66654991 -92944792 + L1MEc LINE L1 875 1393 -5007 2 1093 536 258 23 15 chr3 66654991 66655121 -92944662 + B1F SINE Alu 1 131 -18 2 1093 453 36 0 0 chr3 66655126 66655181 -92944602 + (GGA)n Simple_repeat Simple_repeat 2 56 0 2 1093 690 47 0 0 chr3 66655181 66655267 -92944516 + (GGAA)n Simple_repeat Simple_repeat 1 86 0 2 1093 318 239 289 60 chr3 66655278 66655299 -92944484 + L1MEc LINE L1 1402 1418 -4982 2 1093 3317 30 2 12 chr3 66655299 66655699 -92944084 + MTA_Mm LTR MaLR 1 396 0 2 1093 318 239 289 60 chr3 66655699 66655926 -92943857 + L1MEc LINE L1 1419 1707 -4693 2 1093 456 298 97 14 chr3 66656134 66656579 -92943204 + L1MEc LINE L1 1917 2398 -4002 2 1093 22 56 0 0 chr3 66656729 66656765 -92943018 + AT_rich Low_complexity Low_complexity 1 36 0 2 1093 25 31 0 0 chr3 66656793 66656825 -92942958 + AT_rich Low_complexity Low_complexity 1 32 0 2 1093 342 222 111 0 chr3 66656853 66656970 -92942813 + L1MEc LINE L1 2649 2778 -3541 2 1093 290 320 114 35 chr3 66656995 66657451 -92942332 + L1M5 LINE L1 3395 3886 -2260 2 1093 324 70 0 0 chr3 66657642 66657685 -92942098 + (CA)n Simple_repeat Simple_repeat 2 44 0 2 1093 4355 14 2 12 chr3 66659247 66659745 -92940038 + MT2_Mm LTR ERVL 1 493 0 2 1093 38775 16 14 0 chr3 66659745 66665032 -92934751 + MERVL-int LTR ERVL 1 5360 -125 2 1093 390 167 46 35 chr3 66665032 66665119 -92934664 + ORR1A3-int LTR MaLR 553 640 -1323 2 1093 302 0 0 0 chr3 66665119 66665157 -92934626 + MERVL-int LTR ERVL 5448 5485 0 2 1093 4355 14 2 12 chr3 66665157 66665655 -92934128 + MT2_Mm LTR ERVL 1 493 0 2 1093 189 26 0 73 chr3 66667031 66667072 -92932711 + (GTTTG)n Simple_repeat Simple_repeat 2 39 0 2 1093 1236 41 7 0 chr3 66667072 66667211 -92932572 - B1_Mus1 SINE Alu -7 141 2 2 1093 641 256 43 0 chr3 66668759 66668923 -92930860 - MLT1D LTR MaLR 0 505 335 2 1093 254 191 0 0 chr3 66668934 66668981 -92930802 + RMER1B Other Other 404 450 -616 2 1093 3009 229 90 21 chr3 66668960 66669736 -92930047 + RMER1A Other Other 151 879 -151 2 1093 339 25 0 0 chr3 66669746 66669786 -92929997 + (TG)n Simple_repeat Simple_repeat 2 41 0 2 1093 237 298 0 146 chr3 66669790 66669900 -92929883 - B4A SINE B4 -12 280 187 2 1093 234 151 19 19 chr3 66670014 66670068 -92929715 + (TTTG)n Simple_repeat Simple_repeat 3 56 0 2 1093 551 78 58 19 chr3 66670149 66670253 -92929530 + RMER1A Other Other 922 1029 -1 2 1093 365 320 101 53 chr3 66670358 66670566 -92929217 - MLT1D LTR MaLR -287 218 1 2 1093 216 0 0 0 chr3 66670705 66670729 -92929054 + (GTTTG)n Simple_repeat Simple_repeat 2 25 0 2 1093 424 284 39 0 chr3 66670824 66670926 -92928857 + PB1D10 SINE Alu 12 117 0 2 1093 5378 184 65 26 chr3 66671104 66672364 -92927419 - Lx5 LINE L1 -1035 6015 4700 2 1093 474 161 0 33 chr3 66672366 66672456 -92927327 - B3 SINE B2 0 216 130 2 1093 1240 118 47 19 chr3 66672462 66672677 -92927106 - Lx5 LINE L1 -2159 3718 3498 2 1093 2319 250 41 18 chr3 66672680 66673694 -92926089 + Lx5 LINE L1 6102 7049 -1 2 1093 216 294 44 0 chr3 66673711 66673779 -92926004 - MIR SINE MIR -3 259 189 2 1093 459 48 0 0 chr3 66673806 66673868 -92925915 + (TG)n Simple_repeat Simple_repeat 2 63 0 2 1093 562 322 38 38 chr3 66673896 66674186 -92925597 - B4A SINE B4 0 292 3 2 1093 216 328 62 23 chr3 66674190 66674318 -92925465 - MIR SINE MIR -102 160 28 2 1093 434 349 59 20 chr3 66674884 66675086 -92924697 - LTR85a LTR Gypsy? -13 689 480 2 1093 3446 164 38 7 chr3 66675706 66676283 -92923500 - RLTR17 LTR ERVK 0 692 98 2 1093 596 250 66 0 chr3 66676397 66676533 -92923250 + L1VL2 LINE L1 254 398 -5937 2 1093 17299 159 219 13 chr3 66676534 66679132 -92920651 + Lx LINE L1 1252 4644 -1239 2 1093 243 61 0 0 chr3 66679132 66679165 -92920618 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 2 1093 17299 133 141 14 chr3 66679165 66681130 -92918653 + Lx LINE L1 4645 6649 -5 2 1093 532 225 38 15 chr3 66682637 66682768 -92917015 - B1F1 SINE Alu -15 134 1 2 1093 271 323 70 10 chr3 66682768 66682868 -92916915 - MIR SINE MIR -34 228 123 2 1093 3197 203 89 11 chr3 66683447 66684168 -92915615 + Lx9 LINE L1 6672 7448 -196 2 1093 1291 217 129 12 chr3 66684168 66684579 -92915204 + MT2A LTR ERVL 1 459 -74 2 1093 333 0 0 0 chr3 66684579 66684616 -92915167 + (TG)n Simple_repeat Simple_repeat 2 38 0 2 1093 235 261 34 11 chr3 66684616 66684705 -92915078 + Lx9 LINE L1 7517 7607 -37 2 1093 1951 75 63 11 chr3 66685682 66685952 -92913831 + Lx3C LINE L1 6691 6974 -2 2 1093 390 42 0 0 chr3 66685962 66686010 -92913773 + (GA)n Simple_repeat Simple_repeat 2 49 0 2 1093 1085 58 0 0 chr3 66686017 66686156 -92913627 + B1_Mm SINE Alu 9 147 0 2 1093 510 16 0 0 chr3 66686156 66686211 -92913572 + (GAA)n Simple_repeat Simple_repeat 3 57 0 2 1093 690 13 0 0 chr3 66686211 66686290 -92913493 + (GGAA)n Simple_repeat Simple_repeat 2 80 0 2 1093 232 213 12 62 chr3 66686452 66686532 -92913251 + A-rich Low_complexity Low_complexity 2 77 0 2 1093 22 35 0 0 chr3 66687062 66687091 -92912692 + AT_rich Low_complexity Low_complexity 1 29 0 2 1093 28 0 0 0 chr3 66688059 66688087 -92911696 + AT_rich Low_complexity Low_complexity 1 28 0 2 1093 1127 340 46 12 chr3 66688092 66688574 -92911209 + Lx8 LINE L1 6756 7253 -220 2 1093 872 271 23 19 chr3 66688572 66688835 -92910948 + Lx6 LINE L1 7060 7323 -137 2 1093 227 103 0 25 chr3 66688836 66688876 -92910907 + (TTTTC)n Simple_repeat Simple_repeat 1 39 0 2 1093 817 270 65 19 chr3 66688924 66688940 -92910843 + Lx LINE L1 5567 5582 -582 2 1093 1543 124 46 21 chr3 66688940 66689179 -92910604 - Lx4A LINE L1 0 7058 6814 2 1093 6750 117 43 16 chr3 66689179 66690072 -92909711 + Lx LINE L1 5583 6487 -167 2 1093 7078 49 2 28 chr3 66690072 66690716 -92909067 - RLTR13B2 LTR ERVK 0 822 194 2 1093 1291 41 0 0 chr3 66690716 66690863 -92908920 + B1_Mm SINE Alu 1 147 0 2 1093 7078 49 2 28 chr3 66690863 66691062 -92908721 - RLTR13B2 LTR ERVK -629 193 1 2 1093 6750 112 42 16 chr3 66691062 66691227 -92908556 + Lx LINE L1 6488 6642 -12 2 1093 1978 251 51 14 chr3 66691232 66691740 -92908043 + Lx6 LINE L1 6918 7444 -16 2 1093 207 0 0 0 chr3 66691829 66691852 -92907931 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 2 1093 959 70 147 0 chr3 66691860 66691989 -92907794 - B1_Mus1 SINE Alu 0 148 1 2 1093 243 333 119 18 chr3 66692025 66692251 -92907532 - MER2 DNA MER2_type -94 251 3 2 1093 330 335 40 20 chr3 66692251 66692382 -92907401 - MLT2B2 LTR ERVL -37 525 392 2 1093 4878 164 37 124 chr3 66692523 66692679 -92907104 - Lx5 LINE L1 0 7050 6892 2 1093 453 50 0 0 chr3 66692679 66692739 -92907044 + (TA)n Simple_repeat Simple_repeat 2 61 0 2 1093 4878 164 37 124 chr3 66692739 66693840 -92905943 - Lx5 LINE L1 -159 6891 5905 2 1093 3352 137 14 34 chr3 66693839 66694399 -92905384 + Lx5 LINE L1 5326 5874 -3 2 1093 276 311 100 53 chr3 66694716 66694906 -92904877 + Charlie5 DNA MER1_type 20 218 -2406 2 1093 1253 41 14 0 chr3 66694939 66695085 -92904698 - B1_Mus1 SINE Alu 0 148 1 2 1093 241 191 71 29 chr3 66695098 66695168 -92904615 + Charlie5 DNA MER1_type 2552 2624 0 2 1093 288 53 0 0 chr3 66695189 66695227 -92904556 + (TG)n Simple_repeat Simple_repeat 2 39 0 2 1093 186 43 0 0 chr3 66695233 66695256 -92904527 + (CAGAGA)n Simple_repeat Simple_repeat 2 24 0 2 1093 537 16 0 0 chr3 66695358 66695420 -92904363 + (TG)n Simple_repeat Simple_repeat 1 62 0 2 1093 237 33 0 0 chr3 66695420 66695450 -92904333 + (GA)n Simple_repeat Simple_repeat 1 30 0 2 1093 1222 88 0 0 chr3 66695838 66695985 -92903798 + B1_Mm SINE Alu 1 147 0 2 1093 27 0 0 0 chr3 66696051 66696078 -92903705 + AT_rich Low_complexity Low_complexity 1 27 0 2 1093 267 247 78 11 chr3 66696551 66696641 -92903142 - L1ME5 LINE L1 -117 6077 5982 3 1093 323 325 86 0 chr3 66696715 66696832 -92902951 - PB1 SINE Alu 0 127 1 3 1093 637 295 40 106 chr3 66697702 66697957 -92901826 + L1M5 LINE L1 4505 4735 -1411 3 1093 279 260 68 0 chr3 66697957 66698030 -92901753 + ID4_ SINE ID 4 81 -2 3 1093 637 295 40 106 chr3 66698030 66698275 -92901508 + L1M5 LINE L1 4736 4972 -1174 3 1093 769 182 301 6 chr3 66698287 66698453 -92901330 + B3 SINE B2 1 215 -1 3 1093 237 258 59 29 chr3 66698510 66698578 -92901205 + L1M3e LINE L1 1 70 -6960 3 1093 7285 130 5 1 chr3 66698602 66700032 -92899751 + Lx LINE L1 5218 6654 0 3 1093 8000 37 2 4 chr3 66700321 66701282 -92898501 - L1Md_F3 LINE L1 -11 6573 5574 3 1093 305 47 23 0 chr3 66701357 66701400 -92898383 + (TTTTC)n Simple_repeat Simple_repeat 1 44 0 3 1093 1022 123 14 0 chr3 66701400 66701546 -92898237 - B1_Mus1 SINE Alu 0 148 1 3 1093 477 277 75 27 chr3 66701772 66701972 -92897811 - B4A SINE B4 -2 290 4 3 1093 357 256 89 113 chr3 66702001 66702161 -92897622 + L1M5 LINE L1 5002 5172 -974 3 1093 857 85 234 21 chr3 66702161 66702306 -92897477 + B2_Mm2 SINE B2 2 177 -18 3 1093 357 256 89 113 chr3 66702306 66702348 -92897435 + L1M5 LINE L1 5173 5199 -947 3 1093 721 267 15 51 chr3 66702352 66702549 -92897234 + B3A SINE B2 4 193 -5 3 1093 189 107 0 0 chr3 66702554 66702582 -92897201 + (CA)n Simple_repeat Simple_repeat 1 28 0 3 1093 226 224 0 0 chr3 66702582 66702631 -92897152 + (TATATG)n Simple_repeat Simple_repeat 6 54 0 3 1093 265 299 32 49 chr3 66702634 66702757 -92897026 - B4A SINE B4 -68 224 104 3 1093 519 252 8 17 chr3 66702656 66702773 -92897010 - PB1D7 SINE Alu 0 120 5 3 1093 304 282 66 86 chr3 66702793 66703037 -92896746 + L1M5 LINE L1 5280 5518 -646 3 1093 799 145 17 0 chr3 66703395 66703512 -92896271 - PB1D9 SINE Alu -1 119 1 3 1093 289 257 219 0 chr3 66703543 66703672 -92896111 + L1_Mur2 LINE L1 680 815 -6271 3 1093 4724 140 74 3 chr3 66703729 66704889 -92894894 + L1_Mur2 LINE L1 819 2060 -3817 3 1093 656 296 62 45 chr3 66705237 66705510 -92894273 - RLTR26 LTR ERVK -79 548 208 3 1093 289 120 0 20 chr3 66705525 66705576 -92894207 + L1Md_T LINE L1 2064 2113 -3767 3 1093 3500 175 7 8 chr3 66705576 66706175 -92893608 - RLTR17 LTR ERVK 0 692 95 3 1093 1020 32 0 0 chr3 66706175 66706298 -92893485 + B1_Mm SINE Alu 25 147 0 3 1093 471 228 82 88 chr3 66706176 66706335 -92893448 + B4 SINE B4 111 268 -24 3 1093 36210 36 0 0 chr3 66706335 66711541 -92888242 + L1Md_T LINE L1 287 5589 -297 3 1093 9565 6 0 0 chr3 66711541 66712537 -92887246 + L1Md_T LINE L1 5590 6585 0 3 1093 1229 22 0 0 chr3 66712537 66712674 -92887109 + L1Md_T LINE L1 5450 5586 -297 3 1093 9591 5 0 0 chr3 66712674 66713670 -92886113 + L1Md_T LINE L1 5587 6582 0 3 1093 477 135 0 0 chr3 66714190 66714279 -92885504 + (CA)n Simple_repeat Simple_repeat 1 89 0 3 1093 243 0 0 0 chr3 66714343 66714370 -92885413 + (A)n Simple_repeat Simple_repeat 1 27 0 3 1093 594 131 30 0 chr3 66714370 66714469 -92885314 - RLTR17 LTR ERVK -590 102 1 3 1093 22668 133 31 2 chr3 66714469 66715503 -92884280 + L1Md_T LINE L1 2108 3171 -2709 3 1093 216 0 0 0 chr3 66715503 66715527 -92884256 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 3 136 35859 57 8 1 chr3 66715527 66723363 -92876420 + L1Md_T LINE L1 240 5874 -6 3 1094 9031 6 0 0 chr3 66723363 66724359 -92875424 + L1Md_T LINE L1 5590 6585 0 3 1094 3381 219 134 45 chr3 66724360 66725442 -92874341 + Lx5 LINE L1 5862 7039 -11 3 1094 270 222 0 0 chr3 66725455 66725509 -92874274 + MTEa LTR MaLR 326 379 0 3 1094 233 320 106 34 chr3 66726527 66726734 -92873049 - MIRb SINE MIR -33 235 14 3 1094 217 361 57 67 chr3 66727579 66727772 -92872011 + MIRc SINE MIR 35 225 -37 3 1094 315 85 0 0 chr3 66727942 66727989 -92871794 + (CCCTG)n Simple_repeat Simple_repeat 1 47 0 3 1094 670 249 63 11 chr3 66728264 66728455 -92871328 + MLT2B4 LTR ERVL 1 201 -355 3 1094 4020 52 26 2 chr3 66729056 66729556 -92870227 - RLTR1B LTR ERV1 0 512 1 3 1094 244 242 14 83 chr3 66729787 66729843 -92869940 - MTE2a LTR MaLR 0 379 329 3 1094 816 263 6 28 chr3 66729843 66730005 -92869778 + B3A SINE B2 1 160 -38 3 1094 461 17 0 17 chr3 66730005 66730064 -92869719 + (CA)n Simple_repeat Simple_repeat 1 58 0 3 1094 816 263 6 28 chr3 66730064 66730081 -92869702 + B3A SINE B2 161 176 -22 3 1094 798 207 36 18 chr3 66730447 66730614 -92869169 + ID_B1 SINE B4 55 224 0 3 1094 1212 54 0 0 chr3 66730837 66730984 -92868799 + B1_Mus2 SINE Alu 1 147 0 3 1094 188 61 61 0 chr3 66731114 66731147 -92868636 + (TATG)n Simple_repeat Simple_repeat 1 35 0 3 1094 363 239 69 42 chr3 66731152 66731296 -92868487 - Lx9 LINE L1 -184 7460 7313 3 1094 238 87 0 42 chr3 66731317 66731365 -92868418 + (TTTTG)n Simple_repeat Simple_repeat 5 50 0 3 1094 424 228 2 38 chr3 66731365 66731477 -92868306 - B1_Mur2 SINE Alu 0 149 43 3 1094 203 211 17 17 chr3 66731477 66731535 -92868248 + T-rich Low_complexity Low_complexity 3 60 0 3 1094 239 260 158 50 chr3 66731587 66731688 -92868095 - PB1 SINE Alu -14 113 2 3 1094 339 250 20 50 chr3 66731969 66732070 -92867713 - B3 SINE B2 -5 211 114 3 1094 455 336 78 7 chr3 66732120 66732261 -92867522 + RSINE1 SINE B4 3 153 -12 3 1094 3090 145 174 2 chr3 66732275 66732862 -92866921 + RMER6C LTR ERVK 3 690 0 3 1094 232 321 7 28 chr3 66732890 66733034 -92866749 + L1MC4a LINE L1 5689 5829 -2053 3 1094 915 280 38 82 chr3 66733042 66733334 -92866449 + B4A SINE B4 9 287 -5 3 1094 400 342 120 42 chr3 66733402 66733735 -92866048 + L1MC4a LINE L1 5827 6185 -1697 3 1094 776 278 65 148 chr3 66733748 66734161 -92865622 - MTE2a LTR MaLR 0 379 1 3 1094 1360 228 59 12 chr3 66734472 66734796 -92864987 - ORR1D2 LTR MaLR 0 370 32 3 1094 1329 156 10 0 chr3 66735434 66735639 -92864144 + B3 SINE B2 3 209 -7 3 1094 405 58 0 0 chr3 66736467 66736519 -92863264 + (GA)n Simple_repeat Simple_repeat 2 53 0 3 1094 843 143 68 0 chr3 66740695 66740828 -92858955 + B1_Mur2 SINE Alu 3 144 -5 3 1094 559 294 6 30 chr3 66740956 66741121 -92858662 + RSINE1 SINE B4 4 164 -1 3 1094 214 286 193 28 chr3 66740964 66741140 -92858643 + B3 SINE B2 11 215 -1 3 1094 387 0 0 0 chr3 66743118 66743161 -92856622 + (GA)n Simple_repeat Simple_repeat 2 44 0 3 1094 1383 182 99 150 chr3 66748116 66748723 -92851060 - Lx LINE L1 0 7696 7121 3 1094 4452 144 17 20 chr3 66748721 66749566 -92850217 + L1_Mur3 LINE L1 3783 4624 -1256 3 1094 771 211 7 7 chr3 66749597 66749740 -92850043 + B1_Mus2 SINE Alu 4 146 -1 3 1094 343 52 37 49 chr3 66749740 66749821 -92849962 + (CAAA)n Simple_repeat Simple_repeat 1 80 0 3 1094 2304 129 13 3 chr3 66750114 66750495 -92849288 - Lx LINE L1 -7 6647 6263 3 1094 455 209 55 0 chr3 66751162 66751253 -92848530 + B3 SINE B2 1 96 -120 3 1094 590 0 14 0 chr3 66751293 66751363 -92848420 + (CA)n Simple_repeat Simple_repeat 2 72 0 3 1094 254 299 72 0 chr3 66751628 66751725 -92848058 - L2 LINE L2 -845 2574 2471 3 1094 22 56 0 0 chr3 66752016 66752052 -92847731 + AT_rich Low_complexity Low_complexity 1 36 0 3 1094 501 80 0 0 chr3 66752847 66752922 -92846861 + (CCAA)n Simple_repeat Simple_repeat 1 75 0 3 1094 343 328 79 35 chr3 66752939 66753003 -92846780 - MIRb SINE MIR -35 233 175 3 1094 1513 234 41 3 chr3 66753003 66753368 -92846415 - MTE2a LTR MaLR 0 379 1 3 1094 343 322 72 48 chr3 66753368 66753528 -92846255 - MIRb SINE MIR -94 174 1 3 1094 23 68 0 0 chr3 66753740 66753784 -92845999 + AT_rich Low_complexity Low_complexity 1 44 0 3 1094 1770 193 63 16 chr3 66754108 66754471 -92845312 + ORR1C2 LTR MaLR 3 382 -2 3 1094 4897 220 93 30 chr3 66754473 66755761 -92844022 + ORR1C2-int LTR MaLR 1 1370 0 3 1094 1657 188 56 86 chr3 66755761 66756157 -92843626 + ORR1C2 LTR MaLR 1 384 0 3 1094 313 0 0 0 chr3 66756203 66756239 -92843544 - U2 snRNA snRNA -152 36 1 3 1094 207 376 97 38 chr3 66756314 66756809 -92842974 + L2 LINE L2 1918 2441 -978 3 1094 1038 194 19 14 chr3 66758802 66759011 -92840772 + B3 SINE B2 1 210 -6 3 1094 460 331 79 54 chr3 66759132 66759448 -92840335 + ORR1E LTR MaLR 22 345 -14 3 1094 875 219 44 5 chr3 66761407 66761613 -92838170 + B3 SINE B2 3 216 0 3 1094 371 231 28 28 chr3 66761806 66761913 -92837870 - PB1D10 SINE Alu -6 111 5 3 1094 328 339 70 94 chr3 66764949 66765291 -92834492 + MARNA DNA Mariner 18 351 -235 3 1094 491 268 7 14 chr3 66766343 66766483 -92833300 + B1F SINE Alu 1 139 -10 3 1094 934 190 102 5 chr3 66766657 66766853 -92832930 + B3 SINE B2 1 215 -1 3 1094 573 240 16 0 chr3 66766873 66766994 -92832789 + B1_Mur2 SINE Alu 26 148 -1 3 1094 198 0 0 0 chr3 66767058 66767080 -92832703 + (TTTA)n Simple_repeat Simple_repeat 1 22 0 3 1094 270 0 0 0 chr3 66767082 66767112 -92832671 + (CATA)n Simple_repeat Simple_repeat 3 32 0 3 1094 690 220 203 0 chr3 66767137 66767314 -92832469 + B3 SINE B2 4 216 0 3 1094 197 83 28 0 chr3 66767379 66767415 -92832368 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 3 1094 230 312 0 15 chr3 66767788 66767853 -92831930 - ID4_ SINE ID -19 64 1 3 1094 279 0 0 0 chr3 66767891 66767922 -92831861 + (CA)n Simple_repeat Simple_repeat 2 32 0 3 1094 319 252 48 139 chr3 66768889 66769055 -92830728 + LFSINE_Vert SINE SINE 141 291 -168 3 1094 438 187 0 0 chr3 66769433 66769524 -92830259 + (TA)n Simple_repeat Simple_repeat 1 91 0 3 1094 644 228 14 7 chr3 66769566 66769712 -92830071 - B1F SINE Alu -2 147 1 3 1094 706 237 0 0 chr3 66769784 66769923 -92829860 + B1_Mur1 SINE Alu 3 141 -8 3 1094 226 354 10 30 chr3 66769950 66770049 -92829734 - MLT1D LTR MaLR -53 452 356 3 1094 228 182 0 0 chr3 66771863 66771907 -92827876 + (TATATG)n Simple_repeat Simple_repeat 5 48 0 3 1094 566 310 73 24 chr3 66772134 66772382 -92827401 - MIR SINE MIR -1 261 2 3 1094 225 0 0 0 chr3 66773859 66773884 -92825899 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 3 1094 210 293 0 0 chr3 66775553 66775611 -92824172 + GA-rich Low_complexity Low_complexity 1 58 0 3 1094 476 229 18 18 chr3 66778314 66778425 -92821358 - MER5A1 DNA MER1_type -37 129 19 3 1094 249 98 0 0 chr3 66779458 66779499 -92820284 + (CAAAAA)n Simple_repeat Simple_repeat 2 42 0 4 1094 215 157 19 38 chr3 66779977 66780030 -92819753 + A-rich Low_complexity Low_complexity 3 54 0 4 1094 279 0 0 0 chr3 66782366 66782397 -92817386 + (CA)n Simple_repeat Simple_repeat 1 31 0 4 1094 591 40 0 0 chr3 66784382 66784456 -92815327 + (TC)n Simple_repeat Simple_repeat 1 74 0 4 1094 330 143 0 0 chr3 66785209 66785286 -92814497 + (TCC)n Simple_repeat Simple_repeat 1 77 0 4 1094 21 36 0 0 chr3 66785286 66785314 -92814469 + GC_rich Low_complexity Low_complexity 1 28 0 4 1094 571 207 0 13 chr3 66785599 66785751 -92814032 + GA-rich Low_complexity Low_complexity 3 152 0 4 1094 612 0 0 0 chr3 66786015 66786083 -92813700 + (GA)n Simple_repeat Simple_repeat 1 68 0 4 1094 21 0 0 0 chr3 66788324 66788345 -92811438 + AT_rich Low_complexity Low_complexity 1 21 0 4 1094 276 30 0 0 chr3 66788580 66788613 -92811170 + (TTTTA)n Simple_repeat Simple_repeat 2 34 0 4 1094 333 0 0 0 chr3 66789019 66789056 -92810727 + (TTTC)n Simple_repeat Simple_repeat 3 39 0 4 1094 1154 35 14 0 chr3 66791053 66791197 -92808586 - B1_Mus2 SINE Alu -1 146 1 4 1094 1135 208 68 42 chr3 66791296 66791632 -92808151 - Lx7 LINE L1 -300 7396 7052 4 1094 216 0 0 0 chr3 66791778 66791802 -92807981 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 4 1094 219 200 0 0 chr3 66791852 66791887 -92807896 - B1F2 SINE Alu -113 36 2 4 1094 919 269 179 3 chr3 66792075 66792455 -92807328 - Charlie1a DNA MER1_type -625 830 384 4 1094 240 35 0 0 chr3 66792518 66792547 -92807236 + (TG)n Simple_repeat Simple_repeat 1 29 0 4 1094 233 338 15 0 chr3 66792587 66792655 -92807128 - ID4 SINE ID -13 70 2 4 1094 258 326 43 57 chr3 66792734 66792874 -92806909 - Charlie1a DNA MER1_type -1304 151 14 4 1094 247 282 69 58 chr3 66793032 66793220 -92806563 - HAL1 LINE L1 -770 1737 1548 4 1094 708 346 138 68 chr3 66793382 66793476 -92806307 - HAL1 LINE L1 -1081 1426 1346 4 1094 207 0 0 0 chr3 66793476 66793499 -92806284 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 4 1094 708 346 138 68 chr3 66793499 66794055 -92805728 - HAL1 LINE L1 -1162 1345 687 4 1094 1450 58 11 0 chr3 66794055 66794245 -92805538 - B2_Mm1t SINE B2 0 193 2 4 1094 708 346 138 68 chr3 66794245 66794823 -92804960 - HAL1 LINE L1 -1821 686 112 4 1094 222 118 0 0 chr3 66794830 66794864 -92804919 + (TCCC)n Simple_repeat Simple_repeat 1 34 0 4 1094 424 228 49 66 chr3 66794878 66794890 -92804893 - B1_Mm SINE Alu -19 128 117 4 1094 242 0 61 0 chr3 66794890 66794923 -92804860 + (TTTG)n Simple_repeat Simple_repeat 4 38 0 4 1094 469 202 55 37 chr3 66794923 66795032 -92804751 - B1_Mur2 SINE Alu -31 118 9 4 1094 478 220 0 21 chr3 66795110 66795203 -92804580 - B1F2 SINE Alu -56 93 3 4 1094 412 242 80 66 chr3 66795318 66795455 -92804328 - B1_Mur1 SINE Alu 0 149 11 4 1094 24 0 0 0 chr3 66795562 66795586 -92804197 + AT_rich Low_complexity Low_complexity 1 24 0 4 1094 254 287 28 0 chr3 66795586 66795694 -92804089 + (TA)n Simple_repeat Simple_repeat 1 111 0 4 1094 324 70 0 0 chr3 66795702 66795745 -92804038 + (CA)n Simple_repeat Simple_repeat 2 44 0 4 1094 655 216 7 14 chr3 66796561 66796702 -92803081 + B1_Mur1 SINE Alu 10 149 0 4 1094 585 0 0 0 chr3 66797158 66797223 -92802560 + (TTCC)n Simple_repeat Simple_repeat 4 68 0 4 1094 644 249 47 28 chr3 66797224 66797435 -92802348 - ID_B1 SINE B4 -8 216 2 4 1094 1068 182 50 0 chr3 66797732 66797930 -92801853 + B3 SINE B2 9 216 0 4 1094 359 350 10 0 chr3 66798248 66798345 -92801438 + PB1 SINE Alu 5 102 -25 4 1094 3157 168 24 58 chr3 66798690 66799328 -92800455 - RMER1B Other Other -11 1055 440 4 1094 297 0 0 0 chr3 66799640 66799673 -92800110 + (TTTA)n Simple_repeat Simple_repeat 1 33 0 4 1094 3963 69 14 4 chr3 66799692 66800242 -92799541 - Lx3_Mus LINE L1 -69 6940 6385 4 1094 248 31 0 0 chr3 66800231 66800263 -92799520 - Lx3_Mus LINE L1 -738 6271 6240 4 1094 249 299 109 29 chr3 66800832 66800970 -92798813 + MLT1B LTR MaLR 4 152 -222 4 1094 615 276 80 65 chr3 66801110 66801326 -92798457 + MLT1B LTR MaLR 155 389 -1 4 1094 27 29 0 0 chr3 66801908 66801942 -92797841 + AT_rich Low_complexity Low_complexity 1 34 0 4 1094 1575 38 21 0 chr3 66802765 66802951 -92796832 - B2_Mm1a SINE B2 -3 190 1 4 1094 658 114 160 65 chr3 66803562 66803731 -92796052 + B2_Mm2 SINE B2 2 186 -9 4 1094 548 231 29 58 chr3 66803757 66803895 -92795888 + ID_B1 SINE B4 87 220 -4 4 1094 653 230 66 13 chr3 66803984 66804168 -92795615 - B3 SINE B2 -9 186 1 4 1094 27 29 0 0 chr3 66804173 66804207 -92795576 + AT_rich Low_complexity Low_complexity 1 34 0 4 1094 787 164 21 14 chr3 66804435 66804577 -92795206 + B1_Mus2 SINE Alu 3 145 -2 4 1094 280 276 91 70 chr3 66804665 66804996 -92794787 - L1ME1 LINE L1 -24 6420 6083 4 1094 222 156 22 0 chr3 66804996 66805041 -92794742 + (TTTA)n Simple_repeat Simple_repeat 1 46 0 4 1094 11286 85 24 4 chr3 66805608 66808415 -92791368 - L1VL2 LINE L1 -2594 3292 365 4 1094 320 325 78 13 chr3 66808526 66808679 -92791104 - L1ME1 LINE L1 -247 5932 5770 4 1094 262 163 0 0 chr3 66808839 66808882 -92790901 - L1M3 LINE L1 -3558 2582 2540 4 1094 671 278 0 80 chr3 66808887 66809063 -92790720 + RSINE1 SINE B4 4 165 0 4 1094 608 244 95 17 chr3 66809085 66809381 -92790402 - L1M3 LINE L1 -3588 2552 2234 4 1094 753 360 53 26 chr3 66809397 66810021 -92789762 - Lx8 LINE L1 -2 7471 6831 4 1094 1821 148 88 6 chr3 66810050 66810389 -92789394 + ORR1B2 LTR MaLR 1 367 0 4 1094 239 222 0 116 chr3 66810496 66810608 -92789175 - L1M3 LINE L1 -3904 2236 2138 4 1094 474 186 29 10 chr3 66810610 66810713 -92789070 - Lx6 LINE L1 -275 7185 7081 4 1094 702 210 191 11 chr3 66811022 66811200 -92788583 - B3 SINE B2 -25 191 4 4 1094 277 139 0 0 chr3 66811616 66811659 -92788124 - ORR1C1 LTR MaLR 0 378 336 4 1094 381 275 11 0 chr3 66811658 66811749 -92788034 - RSINE1 SINE B4 -73 92 1 4 1094 25 51 0 0 chr3 66811784 66811823 -92787960 + AT_rich Low_complexity Low_complexity 1 39 0 4 1094 266 324 39 70 chr3 66811987 66812143 -92787640 + B4A SINE B4 125 275 -17 4 1094 218 400 0 0 chr3 66812406 66812481 -92787302 + PB1D10 SINE Alu 2 76 -41 4 1094 27 0 0 0 chr3 66812562 66812589 -92787194 + AT_rich Low_complexity Low_complexity 1 27 0 4 1094 213 39 0 0 chr3 66815293 66815319 -92784464 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 4 1094 375 223 243 0 chr3 66815319 66815422 -92784361 - B1_Mur1 SINE Alu -13 136 9 4 1094 359 225 12 0 chr3 66815419 66815499 -92784284 - RMER12 LTR ERVK -474 848 768 4 1094 255 246 29 0 chr3 66815555 66815624 -92784159 - ID4_ SINE ID -10 73 3 4 1094 842 205 186 32 chr3 66815974 66816226 -92783557 - B4A SINE B4 0 292 2 4 1094 258 232 254 0 chr3 66816287 66816370 -92783413 - PB1D10 SINE Alu -7 120 18 4 1094 1026 212 70 32 chr3 66816435 66816740 -92783043 - MTE2a LTR MaLR 0 379 1 4 1094 703 270 6 27 chr3 66816828 66817011 -92782772 - B3A SINE B2 -6 192 14 4 1094 228 200 0 0 chr3 66817881 66817931 -92781852 + (TG)n Simple_repeat Simple_repeat 2 51 0 4 1094 301 294 45 18 chr3 66818426 66818537 -92781246 - PB1D10 SINE Alu -3 114 1 4 1094 287 270 11 65 chr3 66818618 66818804 -92780979 + (TG)n Simple_repeat Simple_repeat 1 176 0 4 1094 244 287 199 20 chr3 66818984 66819130 -92780653 - B4A SINE B4 -61 231 60 4 1094 533 313 35 18 chr3 66819889 66820058 -92779725 - B3 SINE B2 -18 198 27 4 1094 31 44 0 0 chr3 66820325 66820370 -92779413 + AT_rich Low_complexity Low_complexity 1 45 0 4 1094 412 265 48 29 chr3 66820370 66820475 -92779308 - B1F SINE Alu -21 128 22 4 1094 543 16 0 0 chr3 66821535 66821599 -92778184 + (TG)n Simple_repeat Simple_repeat 2 65 0 4 1094 370 219 16 0 chr3 66821602 66821666 -92778117 - ID4_ SINE ID -10 73 9 4 1094 21 82 0 0 chr3 66822178 66822227 -92777556 + AT_rich Low_complexity Low_complexity 1 49 0 4 1094 19996 197 84 50 chr3 66822227 66824845 -92774938 - Lx5 LINE L1 -22 7028 4283 4 1094 6798 45 7 1 chr3 66824845 66825683 -92774100 - L1Md_F2 LINE L1 -1 6581 5739 4 1094 19996 159 56 27 chr3 66825683 66826463 -92773320 - Lx5 LINE L1 -1598 4282 3476 4 1094 197 33 33 0 chr3 66826463 66826493 -92773290 + (TTTG)n Simple_repeat Simple_repeat 1 31 0 4 1094 19996 159 56 27 chr3 66826493 66827933 -92771850 - Lx5 LINE L1 -2405 3475 2058 4 1094 201 74 0 0 chr3 66827933 66827960 -92771823 + (TGG)n Simple_repeat Simple_repeat 3 29 0 4 1094 221 75 25 0 chr3 66827964 66828004 -92771779 + (TG)n Simple_repeat Simple_repeat 2 42 0 4 1094 19996 159 56 27 chr3 66828004 66828663 -92771120 - Lx5 LINE L1 -3823 2057 1337 4 1094 216 0 0 0 chr3 66828663 66828687 -92771096 + (TTG)n Simple_repeat Simple_repeat 1 24 0 4 1094 19996 190 76 25 chr3 66828687 66830137 -92769646 - Lx5 LINE L1 -4544 1336 22 4 1094 347 234 0 25 chr3 66830391 66830470 -92769313 - ID_B1 SINE B4 -68 156 80 4 1094 6723 87 4 19 chr3 66830497 66831864 -92767919 - L1_Mus1 LINE L1 0 6567 5220 4 1094 2850 14 54 8 chr3 66831864 66832215 -92767568 + IAPLTR1_Mm LTR ERVK 1 367 0 4 1094 936 125 74 0 chr3 66832215 66832391 -92767392 + IAPEz-int LTR ERVK 8 196 -6285 4 1094 994 154 16 21 chr3 66832365 66832557 -92767226 + MMERVK10C-int LTR ERVK 70 260 -7321 4 1094 10324 25 2 5 chr3 66832558 66833752 -92766031 + IAPEz-int LTR ERVK 5292 6481 0 4 1094 2820 14 54 8 chr3 66833752 66834103 -92765680 + IAPLTR1_Mm LTR ERVK 1 367 0 4 1094 663 151 32 1 chr3 66834103 66834249 -92765534 - L1_Mur2 LINE L1 -892 5254 5095 4 1094 344 241 118 19 chr3 66834593 66834754 -92765029 + Lx7 LINE L1 7520 7696 0 4 1094 440 212 23 12 chr3 66834951 66835037 -92764746 + B3A SINE B2 5 91 -107 4 1094 390 21 0 0 chr3 66835086 66835133 -92764650 + (CA)n Simple_repeat Simple_repeat 1 47 0 4 1094 736 327 5 15 chr3 66835202 66835407 -92764376 - ID_B1 SINE B4 0 224 22 4 1094 1150 55 7 0 chr3 66836973 66837118 -92762665 + B1_Mm SINE Alu 1 146 -1 4 1094 460 317 88 14 chr3 66837490 66837637 -92762146 + RSINE1 SINE B4 8 165 0 4 1094 336 276 30 10 chr3 66837661 66837760 -92762023 + Lx9 LINE L1 5856 5956 -1688 4 1094 1112 296 118 21 chr3 66837757 66838223 -92761560 + Lx9 LINE L1 6958 7468 -176 4 1094 350 173 13 0 chr3 66838232 66838307 -92761476 + (CA)n Simple_repeat Simple_repeat 1 76 0 4 1094 882 262 15 19 chr3 66838471 66838677 -92761106 + B3 SINE B2 1 205 -11 4 1094 23 54 0 0 chr3 66838981 66839018 -92760765 + AT_rich Low_complexity Low_complexity 1 37 0 4 1094 645 308 9 27 chr3 66839030 66839250 -92760533 + B4A SINE B4 2 217 -75 4 1094 21 57 0 0 chr3 66841564 66841599 -92758184 + AT_rich Low_complexity Low_complexity 1 35 0 5 1094 454 380 81 38 chr3 66842887 66843232 -92756551 + L4 LINE RTE 1077 1436 -593 5 1094 509 80 0 13 chr3 66843986 66844062 -92755721 + (TTTC)n Simple_repeat Simple_repeat 2 76 0 5 1094 1181 301 65 20 chr3 66844064 66844553 -92755230 + L1MEf LINE L1 330 840 -5360 5 1094 303 297 55 0 chr3 66844574 66844665 -92755118 - RSINE1 SINE B4 0 165 70 5 1094 837 200 194 0 chr3 66844683 66844863 -92754920 - B3 SINE B2 0 216 2 5 1094 280 353 94 0 chr3 66844866 66844951 -92754832 - RSINE1 SINE B4 -68 97 5 5 1094 312 173 0 129 chr3 66844954 66845047 -92754736 + L1MEf LINE L1 830 910 -5290 5 1094 4790 139 90 21 chr3 66845248 66846094 -92753689 - L1_Mus4 LINE L1 0 6636 5733 5 136 17232 137 34 4 chr3 66846086 66849712 -92750071 - L1VL1 LINE L1 -1736 4147 411 5 1095 617 69 0 11 chr3 66850002 66850090 -92749693 + (TCCCC)n Simple_repeat Simple_repeat 1 87 0 5 1095 825 40 0 0 chr3 66850094 66850195 -92749588 + (TTTCC)n Simple_repeat Simple_repeat 5 105 0 5 1095 305 180 46 154 chr3 66851602 66851710 -92748073 + B1_Mur2 SINE Alu 42 135 -14 5 1095 844 217 38 5 chr3 66851836 66852021 -92747762 - B3 SINE B2 -5 211 21 5 1095 36682 52 1 4 chr3 66852137 66857799 -92741984 - L1Md_F2 LINE L1 -12 6570 928 5 1095 262 139 0 0 chr3 66857797 66857840 -92741943 - L1Md_F2 LINE L1 -5987 629 587 5 1095 428 234 0 0 chr3 66857838 66857932 -92741851 - L1Md_F2 LINE L1 -6191 425 332 5 1095 911 242 11 25 chr3 66857923 66858203 -92741580 - L1VL1 LINE L1 -6123 515 240 5 1095 726 184 14 7 chr3 66858310 66858452 -92741331 + B1_Mus1 SINE Alu 5 147 -1 5 1095 23 33 0 0 chr3 66858477 66858507 -92741276 + AT_rich Low_complexity Low_complexity 1 30 0 5 1095 1818 189 106 18 chr3 66858862 66859249 -92740534 - MTC LTR MaLR 0 421 1 5 1095 246 310 158 8 chr3 66859613 66859876 -92739907 + L1M4 LINE L1 5588 5889 -285 5 1095 988 0 0 0 chr3 66859879 66859986 -92739797 + U6 snRNA snRNA 1 107 0 5 1095 15034 55 1 1 chr3 66859986 66861887 -92737896 + L1Md_F2 LINE L1 3685 5586 -297 5 1095 7974 49 5 0 chr3 66861888 66862879 -92736904 + L1Md_F2 LINE L1 5587 6582 0 5 1095 441 298 147 15 chr3 66862884 66863150 -92736633 + L1ME1 LINE L1 5878 6178 -1 5 1095 351 291 39 10 chr3 66863592 66863696 -92736087 - PB1D10 SINE Alu -10 107 1 5 1095 189 0 0 0 chr3 66863709 66863730 -92736053 + (T)n Simple_repeat Simple_repeat 1 21 0 5 1095 298 310 41 72 chr3 66863886 66864156 -92735627 - L1MD LINE L1 -857 5587 5329 5 1095 189 107 0 0 chr3 66864192 66864220 -92735563 + (CCCCG)n Simple_repeat Simple_repeat 1 28 0 5 1095 712 188 12 12 chr3 66864219 66864386 -92735397 + (CTATT)n Simple_repeat Simple_repeat 1 167 0 5 1095 7178 82 0 2 chr3 66864457 66865439 -92734344 + L1_Mm LINE L1 3198 4177 -1706 5 1095 202 200 0 0 chr3 66865481 66865521 -92734262 + (TG)n Simple_repeat Simple_repeat 1 40 0 5 1095 807 144 16 0 chr3 66865594 66865719 -92734064 - B1_Mur4 SINE Alu 0 150 24 5 1095 23 38 0 54 chr3 66865740 66865796 -92733987 + AT_rich Low_complexity Low_complexity 1 53 0 5 1095 240 111 0 0 chr3 66865859 66865895 -92733888 + (TG)n Simple_repeat Simple_repeat 2 37 0 5 1095 28 0 0 0 chr3 66865984 66866012 -92733771 + AT_rich Low_complexity Low_complexity 1 28 0 5 1095 201 159 0 0 chr3 66866140 66866184 -92733599 + (CCAA)n Simple_repeat Simple_repeat 2 45 0 5 1095 316 175 148 15 chr3 66866199 66866281 -92733502 - PB1D10 SINE Alu -8 119 18 5 1095 263 267 65 92 chr3 66866298 66866417 -92733366 - ORR1D2 LTR MaLR -35 335 207 5 1095 432 0 0 0 chr3 66867222 66867270 -92732513 + (TG)n Simple_repeat Simple_repeat 2 49 0 5 1095 368 279 33 73 chr3 66867375 66867526 -92732257 - L1MD LINE L1 -2891 3255 3111 5 1095 502 298 60 41 chr3 66867705 66868072 -92731711 - L1M5 LINE L1 -3187 2959 2586 5 1095 272 0 79 0 chr3 66868103 66868141 -92731642 + (TTTTG)n Simple_repeat Simple_repeat 5 45 0 5 1095 306 125 0 0 chr3 66868148 66868196 -92731587 + (TC)n Simple_repeat Simple_repeat 1 48 0 5 1095 237 33 0 0 chr3 66868198 66868228 -92731555 + (TATAG)n Simple_repeat Simple_repeat 1 30 0 5 1095 308 173 5 126 chr3 66868228 66868426 -92731357 - RMER17C LTR ERVK -148 262 89 5 1095 1455 266 40 64 chr3 66868456 66868906 -92730877 - Lx7 LINE L1 -984 6712 6274 5 1095 268 253 141 31 chr3 66868926 66869089 -92730694 - L1MD LINE L1 -788 5454 5274 5 1095 347 323 10 10 chr3 66869109 66869206 -92730577 - PB1 SINE Alu -22 105 9 5 1095 1726 141 39 13 chr3 66869270 66869631 -92730152 - BGLII_B LTR ERVK -54 391 3 5 1095 1860 224 40 2 chr3 66869631 66870122 -92729661 - Lx5 LINE L1 -671 6789 6059 5 1095 302 271 49 14 chr3 66870136 66870278 -92729505 - L1MD LINE L1 -961 5185 5039 5 1095 731 210 0 14 chr3 66870322 66870462 -92729321 - B1_Mur1 SINE Alu 0 149 12 5 1095 540 264 0 66 chr3 66870462 66870488 -92729295 - ID_B1 SINE B4 0 224 70 5 1095 247 113 38 0 chr3 66870842 66870895 -92728888 + (TA)n Simple_repeat Simple_repeat 2 56 0 5 1095 250 351 132 26 chr3 66871191 66871571 -92728212 - L2a LINE L2 0 3426 3007 5 1095 1047 82 7 0 chr3 66872182 66872328 -92727455 - B1_Mus2 SINE Alu 0 147 1 5 1095 288 70 0 0 chr3 66872713 66872756 -92727027 + (TTAA)n Simple_repeat Simple_repeat 2 44 0 5 1095 1361 0 0 0 chr3 66872756 66872914 -92726869 - B2_Mm1a SINE B2 -34 159 2 5 1095 23 33 0 0 chr3 66872996 66873026 -92726757 + AT_rich Low_complexity Low_complexity 1 30 0 5 1095 510 207 71 36 chr3 66873412 66873552 -92726231 - B1_Mus2 SINE Alu -1 146 2 5 1095 21 36 0 0 chr3 66873574 66873602 -92726181 + AT_rich Low_complexity Low_complexity 1 28 0 5 1095 297 0 0 0 chr3 66874066 66874099 -92725684 + (TG)n Simple_repeat Simple_repeat 1 33 0 5 1095 334 351 166 0 chr3 66877305 66877456 -92722327 - B4A SINE B4 0 292 117 5 1095 2611 118 57 2 chr3 66877494 66877570 -92722213 - Lx3B LINE L1 -15 6958 6878 5 1095 1170 0 0 0 chr3 66877570 66877700 -92722083 + (CA)n Simple_repeat Simple_repeat 2 131 0 5 1095 2611 118 57 2 chr3 66877700 66878030 -92721753 - Lx3B LINE L1 -96 6877 6531 5 1095 35 0 0 0 chr3 66878311 66878346 -92721437 + AT_rich Low_complexity Low_complexity 1 35 0 5 1095 221 150 0 0 chr3 66879820 66879860 -92719923 + (GTTTG)n Simple_repeat Simple_repeat 5 44 0 5 1095 778 199 14 0 chr3 66879860 66880001 -92719782 - B1_Mur4 SINE Alu -7 143 1 5 1095 21 0 0 0 chr3 66880511 66880532 -92719251 + AT_rich Low_complexity Low_complexity 1 21 0 5 1095 1350 264 107 32 chr3 66880533 66881308 -92718475 - L1M2 LINE L1 -993 5150 4318 5 1095 304 338 27 27 chr3 66881414 66881563 -92718220 - B1F1 SINE Alu 0 149 1 5 1095 478 259 107 60 chr3 66881565 66881799 -92717984 - L1M2 LINE L1 -1821 4322 4078 5 1095 307 304 202 64 chr3 66881864 66882350 -92717433 - L1MEb LINE L1 -5142 928 376 5 1095 223 152 0 0 chr3 66882366 66882399 -92717384 + ID4 SINE ID 2 34 -49 5 1095 2370 69 85 0 chr3 66882674 66882993 -92716790 - ORR1A1 LTR MaLR 0 346 1 5 1095 214 329 0 141 chr3 66883121 66883220 -92716563 + FAM SINE Alu 144 228 -83 5 1095 638 301 103 27 chr3 66883301 66883564 -92716219 - B4A SINE B4 -6 286 4 5 1095 4545 183 28 56 chr3 66883720 66884212 -92715571 - L1VL4 LINE L1 -3591 2295 1801 5 1095 1172 240 158 31 chr3 66884212 66884291 -92715492 - RLTR16 LTR ERVK 0 505 415 5 1095 414 0 0 0 chr3 66884291 66884337 -92715446 + (CA)n Simple_repeat Simple_repeat 2 47 0 5 1095 1172 240 158 31 chr3 66884337 66884705 -92715078 - RLTR16 LTR ERVK -91 414 1 5 1095 4545 183 28 56 chr3 66884705 66885059 -92714724 - L1VL4 LINE L1 -4086 1800 1494 5 1095 1102 82 7 0 chr3 66885059 66885205 -92714578 - B1_Mus1 SINE Alu 0 148 2 5 1095 4545 206 38 32 chr3 66885205 66885866 -92713917 - L1VL4 LINE L1 -4393 1493 817 5 1095 234 280 40 0 chr3 66886535 66886610 -92713173 + (CAGAGA)n Simple_repeat Simple_repeat 1 78 0 5 1095 233 300 113 72 chr3 66886916 66887110 -92712673 + Charlie13a DNA Charlie 215 416 -1098 5 1095 697 327 4 0 chr3 66887434 66887660 -92712123 - Lx8 LINE L1 -666 6807 6581 5 1095 21 0 0 0 chr3 66887697 66887718 -92712065 + AT_rich Low_complexity Low_complexity 1 21 0 5 1095 4166 53 0 0 chr3 66889574 66890085 -92709698 - L1Md_F2 LINE L1 -12 6570 6060 5 1095 2959 63 0 0 chr3 66890085 66890482 -92709301 + L1_Mm LINE L1 4959 5355 -528 5 1095 1197 130 120 0 chr3 66890628 66890828 -92708955 - URR1A DNA MER1_type -2 224 1 5 1095 1256 67 0 24 chr3 66891038 66891206 -92708577 + B2_Mm2 SINE B2 1 164 -31 5 1095 544 301 88 37 chr3 66891279 66891576 -92708207 - LTR37A LTR ERV1 -27 399 88 5 1095 261 190 17 33 chr3 66891660 66891720 -92708063 + CT-rich Low_complexity Low_complexity 4 62 0 5 1095 210 333 17 34 chr3 66891767 66891826 -92707957 - B4A SINE B4 -145 147 90 5 1095 1744 204 54 32 chr3 66892131 66892540 -92707243 + MTD LTR MaLR 1 418 -1 5 1095 4086 57 0 2 chr3 66893398 66893906 -92705877 - L1Md_F2 LINE L1 -12 6570 6064 5 1095 404 330 0 0 chr3 66894212 66894309 -92705474 + B1F2 SINE Alu 38 134 -15 5 1095 271 262 0 0 chr3 66894332 66894393 -92705390 + GA-rich Low_complexity Low_complexity 2 62 0 5 1095 31 92 0 0 chr3 66895003 66895090 -92704693 + AT_rich Low_complexity Low_complexity 1 87 0 5 1095 1187 68 0 0 chr3 66895102 66895248 -92704535 - B1_Mus1 SINE Alu -1 147 2 5 1095 410 286 70 0 chr3 66895669 66895854 -92703929 - L1ME1 LINE L1 -232 5947 5750 5 1095 675 131 14 62 chr3 66895950 66896096 -92703687 - Lx LINE L1 -12 6642 6504 5 1095 252 0 0 0 chr3 66896395 66896423 -92703360 + (T)n Simple_repeat Simple_repeat 1 28 0 5 1095 231 188 0 0 chr3 66896560 66896608 -92703175 + (CTA)n Simple_repeat Simple_repeat 2 49 0 5 1095 182 246 16 0 chr3 66896608 66896669 -92703114 + CT-rich Low_complexity Low_complexity 2 63 0 5 1095 273 315 35 61 chr3 66896776 66896891 -92702892 - MIRc SINE MIR -111 157 46 5 1095 352 258 446 0 chr3 66896973 66897103 -92702680 + ID_B1 SINE B4 37 224 0 5 1095 281 203 71 24 chr3 66897117 66897243 -92702540 + Lx6 LINE L1 7328 7459 -1 5 1095 399 302 43 8 chr3 66897685 66897802 -92701981 - ID_B1 SINE B4 -62 162 42 6 1095 1397 270 89 58 chr3 66897852 66898556 -92701227 - Lx7 LINE L1 -1 7695 6970 6 1095 3037 226 96 33 chr3 66898539 66899640 -92700143 - L1_Mur3 LINE L1 -390 5493 4299 6 1095 976 157 136 0 chr3 66899640 66899838 -92699945 + URR1A DNA MER1_type 2 226 0 6 1095 3037 195 90 36 chr3 66899838 66899995 -92699788 - L1_Mur3 LINE L1 -1582 4298 4127 6 1095 6611 15 1 1 chr3 66899999 66900741 -92699042 + RLTR4_Mm LTR ERV1 1 742 0 6 1095 22340 12 1 0 chr3 66900742 66903374 -92696409 + RLTR4_MM-int LTR ERV1 1 2634 -4967 6 1095 24328 21 13 0 chr3 66903369 66906328 -92693455 + RLTR4_MM-int LTR ERV1 3841 6838 -763 6 1095 5551 15 0 0 chr3 66906325 66906974 -92692809 + RLTR4_MM-int LTR ERV1 6953 7601 0 6 1095 6611 15 1 1 chr3 66906974 66907716 -92692067 + RLTR4_Mm LTR ERV1 1 742 0 6 1095 375 184 11 11 chr3 66907717 66907805 -92691978 - L1_Mur3 LINE L1 -1755 4125 4038 6 1095 486 0 0 0 chr3 66907805 66907859 -92691924 + (TC)n Simple_repeat Simple_repeat 1 54 0 6 1095 2141 158 124 43 chr3 66907903 66908243 -92691540 + RMER4B LTR ERVK 1 352 -233 6 1095 6856 45 39 7 chr3 66908243 66909108 -92690675 - RLTR13B1 LTR ERVK 0 893 1 6 1095 2141 161 126 40 chr3 66909108 66909274 -92690509 + RMER4B LTR ERVK 328 530 -55 6 1095 5734 181 95 26 chr3 66909286 66910873 -92688910 - L1_Mur3 LINE L1 -1924 3956 2260 6 1095 277 143 47 16 chr3 66910865 66910929 -92688854 - L1_Mur3 LINE L1 -4268 1612 1547 6 1095 1070 72 19 50 chr3 66910934 66911094 -92688689 - B2_Mm2 SINE B2 -4 191 37 6 1095 497 229 47 39 chr3 66911096 66911223 -92688560 - MTE2b LTR MaLR -251 128 1 6 1095 574 322 114 6 chr3 66911253 66911428 -92688355 + B4A SINE B4 97 290 -2 6 1095 353 316 105 71 chr3 66911528 66911725 -92688058 - L1M5 LINE L1 -743 5403 5201 6 1095 326 196 63 81 chr3 66911725 66911836 -92687947 - PB1D9 SINE Alu -9 111 3 6 1095 353 316 105 71 chr3 66911836 66912020 -92687763 - L1M5 LINE L1 -946 5200 5009 6 1095 423 297 45 82 chr3 66912074 66912342 -92687441 - L1MD LINE L1 -1772 4374 4117 6 1095 376 274 18 28 chr3 66912422 66912531 -92687252 - B3 SINE B2 -103 113 6 6 1095 293 312 80 88 chr3 66912658 66912957 -92686826 - ORR1E LTR MaLR 0 379 41 6 1095 1164 99 50 6 chr3 66913101 66913283 -92686500 - B2_Mm2 SINE B2 -3 192 3 6 1095 345 260 48 20 chr3 66913285 66913458 -92686325 - L1MD LINE L1 -2221 3925 3742 6 1095 228 241 12 12 chr3 66913633 66913713 -92686070 - L1MC LINE L1 -2686 3460 3381 6 1095 323 292 65 74 chr3 66913809 66914253 -92685530 - L1MD LINE L1 -2991 3155 2716 6 1095 498 334 125 56 chr3 66914292 66914796 -92684987 - L1MDa LINE L1 -3487 3050 2512 6 1095 1545 164 36 25 chr3 66914797 66915078 -92684705 + ORR1B1 LTR MaLR 3 286 -108 6 1095 320 284 20 0 chr3 66915080 66915182 -92684601 - L1MDa LINE L1 -4147 2486 2383 6 1095 458 295 45 15 chr3 66915207 66915341 -92684442 - ID_B1 SINE B4 0 224 87 6 1095 231 36 0 0 chr3 66916087 66916115 -92683668 + (TCCC)n Simple_repeat Simple_repeat 2 29 0 6 1095 344 344 47 43 chr3 66916115 66916349 -92683434 - B4 SINE B4 -47 245 11 6 1095 21 0 0 0 chr3 66916423 66916444 -92683339 + AT_rich Low_complexity Low_complexity 1 21 0 6 1095 212 278 56 0 chr3 66917318 66917372 -92682411 + RSINE1 SINE B4 3 59 -106 6 1095 334 323 0 14 chr3 66917652 66917777 -92682006 + MIR SINE MIR 50 176 -100 6 1095 3850 231 152 7 chr3 66918292 66919418 -92680365 + Lx7 LINE L1 6109 7397 -299 6 1095 432 0 0 0 chr3 66919420 66919468 -92680315 + (TAGA)n Simple_repeat Simple_repeat 2 49 0 6 1095 636 374 130 18 chr3 66919595 66920197 -92679586 - L2 LINE L2 -410 3009 2341 6 1095 283 303 85 98 chr3 66920405 66920712 -92679071 - L2c LINE L2 -34 3353 3051 6 1095 24 0 0 0 chr3 66921089 66921113 -92678670 + AT_rich Low_complexity Low_complexity 1 24 0 6 1095 202 62 62 0 chr3 66921169 66921201 -92678582 + (TAAAA)n Simple_repeat Simple_repeat 1 34 0 6 1095 300 215 65 9 chr3 66923678 66923786 -92675997 + L1MA8 LINE L1 6081 6194 -97 6 1095 231 240 0 0 chr3 66923808 66923858 -92675925 + (TA)n Simple_repeat Simple_repeat 2 51 0 6 1095 779 308 66 43 chr3 66925187 66925489 -92674294 - MTD LTR MaLR -110 309 1 6 1095 328 261 21 42 chr3 66925601 66925697 -92674086 + MLT1A1 LTR MaLR 2 95 -313 6 1095 3646 159 245 13 chr3 66925775 66926749 -92673034 - L1_Mur3 LINE L1 -1215 4665 3466 6 1095 264 59 0 0 chr3 66926764 66926798 -92672985 + (TTCA)n Simple_repeat Simple_repeat 1 34 0 6 1095 1634 171 44 0 chr3 66926798 66927091 -92672692 - Lx5 LINE L1 -16 7034 6729 6 1095 7538 103 111 2 chr3 66927244 66928213 -92671570 - Lx3_Mus LINE L1 0 7009 5940 6 1095 783 83 0 0 chr3 66928213 66928321 -92671462 + (TTTTC)n Simple_repeat Simple_repeat 2 109 0 6 1095 7538 89 18 0 chr3 66928321 66928881 -92670902 - Lx3_Mus LINE L1 -1070 5939 5344 6 1095 15314 83 70 12 chr3 66928871 66931360 -92668423 - Lx3_Mus LINE L1 -1550 4336 1706 6 1095 1098 158 29 20 chr3 66931361 66931607 -92668176 - Lx4B LINE L1 -999 6059 5809 6 1095 6988 119 101 15 chr3 66931608 66933251 -92666532 - Lx LINE L1 0 6654 4778 6 1095 7982 137 44 3 chr3 66933252 66934793 -92664990 - Lx LINE L1 -1637 4240 2636 6 1095 506 209 163 18 chr3 66935621 66935787 -92663996 + Tigger5 DNA MER2_type 2216 2405 -1 6 1095 261 343 93 67 chr3 66935924 66936074 -92663709 - LTR50 LTR ERVL -252 543 390 6 1095 757 242 54 42 chr3 66936534 66936702 -92663081 + B3 SINE B2 1 170 -46 6 1095 258 301 57 19 chr3 66937088 66937193 -92662590 - MER106B DNA MER1_type -938 121 13 6 1095 277 133 0 0 chr3 66937368 66937413 -92662370 - MTD LTR MaLR -9 410 366 6 1095 208 212 30 15 chr3 66940692 66940759 -92659024 + CT-rich Low_complexity Low_complexity 2 69 0 6 1095 240 266 153 19 chr3 66941372 66941529 -92658254 - MER104 DNA Tc2 -2 179 2 6 1095 448 320 125 47 chr3 66942061 66942325 -92657458 - L1ME1 LINE L1 -156 6023 5736 6 1095 249 57 0 0 chr3 66942325 66942360 -92657423 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 6 1095 448 320 125 47 chr3 66942360 66942456 -92657327 - L1ME1 LINE L1 -444 5735 5635 6 1095 647 300 29 4 chr3 66942626 66942867 -92656916 + L1_Mur3 LINE L1 2464 2710 -3170 6 1095 7659 103 12 35 chr3 66942879 66944602 -92655181 - L1_Mus3 LINE L1 -1 6637 4952 6 1095 231 319 72 30 chr3 66944699 66944935 -92654848 - L1M4 LINE L1 -3631 2515 2270 6 1095 24 32 0 0 chr3 66945029 66945060 -92654723 + AT_rich Low_complexity Low_complexity 1 31 0 6 1095 351 136 0 0 chr3 66946048 66946107 -92653676 + (TG)n Simple_repeat Simple_repeat 2 60 0 6 1095 279 21 41 20 chr3 66946624 66946673 -92653110 + (TTTTTG)n Simple_repeat Simple_repeat 3 52 0 6 1095 1084 70 14 0 chr3 66946674 66946816 -92652967 - B1_Mm SINE Alu -2 145 2 6 1095 23 0 0 0 chr3 66947120 66947143 -92652640 + AT_rich Low_complexity Low_complexity 1 23 0 6 1095 21 95 0 0 chr3 66947551 66947614 -92652169 + AT_rich Low_complexity Low_complexity 1 63 0 6 1095 602 133 78 20 chr3 66947621 66947774 -92652009 - Lx3_Mus LINE L1 -2 7007 6846 6 1095 1131 84 0 7 chr3 66947774 66947929 -92651854 - Lx3_Mus LINE L1 -330 6679 6526 6 1095 1875 83 11 0 chr3 66947923 66948188 -92651595 + L1_Mur1 LINE L1 4354 4621 -1265 6 1095 1029 219 28 5 chr3 66948188 66948399 -92651384 - B3 SINE B2 0 216 1 6 1095 24 0 0 0 chr3 66949896 66949920 -92649863 + AT_rich Low_complexity Low_complexity 1 24 0 6 1095 209 91 68 0 chr3 66950248 66950292 -92649491 + (TA)n Simple_repeat Simple_repeat 1 47 0 6 1095 24 53 0 0 chr3 66950517 66950555 -92649228 + AT_rich Low_complexity Low_complexity 1 38 0 6 1095 22 0 0 0 chr3 66950741 66950763 -92649020 + AT_rich Low_complexity Low_complexity 1 22 0 6 1095 213 94 0 0 chr3 66950813 66950845 -92648938 + (TG)n Simple_repeat Simple_repeat 2 33 0 6 1095 623 238 76 45 chr3 66952426 66952624 -92647159 - MER2 DNA MER2_type -2 343 140 6 1095 3387 113 147 6 chr3 66952638 66953305 -92646478 - Lx3A LINE L1 -88 6893 6133 6 1095 440 263 53 93 chr3 66953305 66953456 -92646327 - MER2 DNA MER2_type -190 155 11 6 1095 7900 88 2 7 chr3 66953592 66955432 -92644351 - L1_Mus2 LINE L1 -1 6565 4738 6 1095 410 107 0 0 chr3 66955435 66955491 -92644292 - L1_Mur1 LINE L1 -329 5557 5502 6 1095 1093 164 50 14 chr3 66955489 66955711 -92644072 + L1_Mm LINE L1 5216 5445 -438 6 1095 191 364 80 55 chr3 66956408 66956769 -92643014 - L2 LINE L2 -660 2759 2390 6 1095 1890 99 0 69 chr3 66956804 66957109 -92642674 - L1_Mus2 LINE L1 -14 6552 6269 6 1095 3090 76 12 0 chr3 66957109 66957532 -92642251 + L1_Mus2 LINE L1 5644 6071 -495 6 1095 39365 4 0 0 chr3 66957874 66963049 -92636734 - L1Md_A LINE L1 0 6582 1408 6 1095 252 0 0 0 chr3 66963050 66963078 -92636705 + (T)n Simple_repeat Simple_repeat 1 28 0 6 1095 8950 10 0 0 chr3 66963094 66964749 -92635034 - L1Md_T LINE L1 0 6582 4928 6 1095 11757 11 1 2 chr3 66964746 66966367 -92633416 - L1Md_A LINE L1 -4470 1413 1 6 1095 429 356 70 56 chr3 66966602 66966913 -92632870 + MER47B DNA MER2_type 29 411 -7 6 1095 284 257 0 54 chr3 66969945 66970019 -92629764 + B4A SINE B4 2 71 -221 6 1095 23 101 0 0 chr3 66970660 66970739 -92629044 + AT_rich Low_complexity Low_complexity 1 79 0 6 1095 259 218 73 0 chr3 66971052 66971131 -92628652 - MER91A DNA Tip100 0 196 105 6 1095 4904 91 18 12 chr3 66971470 66972191 -92627592 - Lx LINE L1 0 6654 5930 6 1095 26 50 0 0 chr3 66972988 66973028 -92626755 + AT_rich Low_complexity Low_complexity 1 40 0 6 1095 214 106 43 0 chr3 66973039 66973086 -92626697 + (TA)n Simple_repeat Simple_repeat 2 50 0 6 1095 240 86 0 0 chr3 66973766 66973801 -92625982 + (TCCC)n Simple_repeat Simple_repeat 3 37 0 6 1095 22 35 0 0 chr3 66974319 66974348 -92625435 + AT_rich Low_complexity Low_complexity 1 29 0 6 1095 402 39 0 0 chr3 66974617 66974669 -92625114 + (GA)n Simple_repeat Simple_repeat 1 52 0 6 1095 225 0 0 0 chr3 66975243 66975268 -92624515 + (A)n Simple_repeat Simple_repeat 1 25 0 6 1095 213 94 0 0 chr3 66975520 66975552 -92624231 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 6 1095 206 324 0 14 chr3 66975613 66975685 -92624098 - MIRc SINE MIR -17 251 181 6 1095 1112 82 7 0 chr3 66975904 66976050 -92623733 - B1_Mus2 SINE Alu 0 147 1 6 1095 1130 217 9 0 chr3 66976507 66976728 -92623055 + MTD LTR MaLR 1 223 -196 6 136 17813 153 26 13 chr3 66976749 66980874 -92618909 + L1VL2 LINE L1 395 4569 -1314 6 1096 803 140 29 12 chr3 66980879 66981052 -92618731 + Lx LINE L1 6478 6653 -1 6 1096 589 171 232 14 chr3 66981059 66981220 -92618563 + MTD LTR MaLR 219 405 -14 6 1096 26 0 0 0 chr3 66981335 66981361 -92618422 + AT_rich Low_complexity Low_complexity 1 26 0 6 1096 289 318 106 0 chr3 66982014 66982099 -92617684 + B1_Mur2 SINE Alu 1 94 -55 6 1096 21 0 0 0 chr3 66982414 66982435 -92617348 + AT_rich Low_complexity Low_complexity 1 21 0 6 1096 380 281 11 0 chr3 66982514 66982603 -92617180 + B3A SINE B2 93 182 -16 7 1096 526 321 37 5 chr3 66982616 66982807 -92616976 - B3A SINE B2 0 198 2 7 1096 396 278 164 6 chr3 66982943 66983120 -92616663 + B3 SINE B2 2 206 -10 7 1096 458 206 69 0 chr3 66983124 66983226 -92616557 + Lx9 LINE L1 6547 6655 -989 7 1096 6664 9 0 1 chr3 66983242 66983995 -92615788 - L1Md_A LINE L1 0 6582 5831 7 1096 850 229 160 0 chr3 66984033 66984264 -92615519 + Lx9 LINE L1 7151 7418 -226 7 1096 180 0 0 0 chr3 66984265 66984285 -92615498 + (CAGA)n Simple_repeat Simple_repeat 1 20 0 7 1096 306 0 0 0 chr3 66985665 66985699 -92614084 + (TG)n Simple_repeat Simple_repeat 1 34 0 7 1096 278 280 97 0 chr3 66986019 66986112 -92613671 + RSINE1 SINE B4 13 114 -51 7 1096 252 259 35 82 chr3 66986237 66986380 -92613403 - Lx7 LINE L1 -394 7302 7175 7 1096 25 0 0 0 chr3 66986486 66986511 -92613272 + AT_rich Low_complexity Low_complexity 1 25 0 7 1096 920 326 141 26 chr3 66988240 66989012 -92610771 - L1MC4 LINE L1 -4345 1870 1010 7 1096 1324 173 9 0 chr3 66991620 66991834 -92607949 + URR1B DNA MER1_type 1 216 -9 7 1096 184 261 43 0 chr3 66994221 66994267 -92605516 + MIR3 SINE MIR 117 164 -44 7 1096 27 62 0 0 chr3 66996358 66996406 -92603377 + AT_rich Low_complexity Low_complexity 1 48 0 7 1096 25 31 0 0 chr3 66998348 66998380 -92601403 + AT_rich Low_complexity Low_complexity 1 32 0 7 1096 404 255 94 35 chr3 66998712 66998915 -92600868 + L1MA9 LINE L1 6097 6311 -1 7 1096 878 153 79 6 chr3 67000101 67000278 -92599505 - URR1A DNA MER1_type 0 226 37 1 1096 249 335 100 35 chr3 67000661 67000831 -92598952 + L2 LINE L2 2775 2955 -464 2 1096 296 348 0 0 chr3 67002518 67002610 -92597173 - MIR SINE MIR -104 158 67 3 1096 4079 72 2 4 chr3 67002653 67003186 -92596597 - L1_Mus2 LINE L1 0 6566 6035 4 1096 252 328 0 25 chr3 67003583 67003702 -92596081 - PB1D10 SINE Alu -1 116 1 5 1096 1059 90 0 20 chr3 67004770 67004918 -92594865 + B1_Mus2 SINE Alu 1 145 -2 6 1096 423 173 39 0 chr3 67004918 67005022 -92594761 + GA-rich Low_complexity Low_complexity 1 108 0 7 1096 9045 183 95 28 chr3 67005627 67008120 -92591663 - Lx6 LINE L1 -650 6810 4200 8 1096 189 0 0 0 chr3 67008120 67008141 -92591642 + (TA)n Simple_repeat Simple_repeat 2 22 0 9 1096 9045 163 92 29 chr3 67008141 67008543 -92591240 - Lx6 LINE L1 -1681 4199 3714 8 1096 3660 223 41 25 chr3 67008581 67009520 -92590263 - Lx2B LINE L1 -154 6846 5967 1 1096 2344 165 2 2 chr3 67009520 67009934 -92589849 - L1_Mur2 LINE L1 -1980 3897 3484 1 1096 264 299 86 6 chr3 67010608 67010783 -92589000 - L1MD LINE L1 -987 5159 4971 1 1096 3457 71 14 0 chr3 67010944 67011497 -92588286 - L1_Mus2 LINE L1 -631 5935 5369 1 1096 4968 211 130 5 chr3 67011545 67012691 -92587092 - Lx7 LINE L1 -805 6891 5603 1 1096 189 0 0 0 chr3 67012796 67012817 -92586966 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 1 1096 346 259 218 18 chr3 67012957 67013143 -92586640 + L1MA5A LINE L1 5566 5773 -395 1 1096 219 114 0 0 chr3 67013143 67013178 -92586605 + (CAGA)n Simple_repeat Simple_repeat 2 36 0 1 1096 346 253 229 16 chr3 67013178 67013282 -92586501 + L1MA5A LINE L1 5774 5914 -386 1 1096 1420 142 28 0 chr3 67013978 67014225 -92585558 - Lx2 LINE L1 -1 6996 6743 1 1096 3267 105 6 19 chr3 67014225 67014702 -92585081 - Lx2 LINE L1 -457 6540 6070 1 1096 234 297 47 0 chr3 67014720 67014784 -92584999 - PB1D7 SINE Alu -53 67 1 1 1096 260 321 22 29 chr3 67014830 67014968 -92584815 - Tigger10 DNA Tigger -625 1218 1082 2 1096 315 0 0 0 chr3 67017696 67017731 -92582052 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 2 1096 465 19 0 0 chr3 67018141 67018195 -92581588 + (GAAA)n Simple_repeat Simple_repeat 3 56 0 2 1096 22 80 0 0 chr3 67018835 67018885 -92580898 + AT_rich Low_complexity Low_complexity 1 50 0 2 1096 1388 62 17 0 chr3 67018950 67019126 -92580657 + B2_Mm2 SINE B2 1 179 -16 2 1096 326 275 179 14 chr3 67019322 67019462 -92580321 - L1ME1 LINE L1 -71 6108 5946 2 1096 21 0 0 0 chr3 67019673 67019694 -92580089 + AT_rich Low_complexity Low_complexity 1 21 0 2 1096 1454 63 21 0 chr3 67019839 67020028 -92579755 - B2_Mm2 SINE B2 -1 194 2 2 1096 723 291 43 5 chr3 67020163 67020370 -92579413 + B3 SINE B2 1 215 -1 2 1096 350 245 59 188 chr3 67021107 67021293 -92578490 - RMER30 DNA MER1_type -39 163 2 2 1096 212 354 99 20 chr3 67021548 67021649 -92578134 - B4 SINE B4 -114 178 70 3 1096 317 24 24 0 chr3 67021775 67021817 -92577966 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 3 1096 1111 97 0 0 chr3 67021817 67021962 -92577821 - B1_Mus1 SINE Alu -2 146 2 3 1096 726 186 14 7 chr3 67022160 67022306 -92577477 - B1_Mus1 SINE Alu -1 147 1 3 1096 7440 159 9 40 chr3 67022331 67023704 -92576079 - Lx3C LINE L1 -2 6974 5644 3 1096 4010 134 54 3 chr3 67023708 67024389 -92575394 + Lx3C LINE L1 4906 5621 -265 3 1096 528 317 119 4 chr3 67024425 67024669 -92575114 - Tigger1 DNA MER2_type -754 1664 1393 3 1096 753 65 0 0 chr3 67026239 67026347 -92573436 - L1_Mus2 LINE L1 0 6566 6459 3 1096 191 36 36 0 chr3 67026484 67026512 -92573271 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 3 1096 22 0 0 0 chr3 67026710 67026732 -92573051 + AT_rich Low_complexity Low_complexity 1 22 0 3 1096 356 293 119 73 chr3 67027224 67027556 -92572227 + MLT1A LTR MaLR 3 457 -10 3 1096 791 131 25 0 chr3 67027730 67027852 -92571931 - B2_Mm2 SINE B2 -70 125 1 4 1096 2930 245 140 61 chr3 67027854 67028423 -92571360 - Lx9 LINE L1 -3 7641 7000 4 1096 1156 68 7 0 chr3 67028423 67028569 -92571214 - B1_Mus1 SINE Alu 0 148 2 4 1096 2930 245 140 61 chr3 67028569 67029045 -92570738 - Lx9 LINE L1 -645 6999 6514 4 1096 299 271 0 0 chr3 67029188 67029258 -92570525 + Lx9 LINE L1 7388 7457 -187 4 1096 342 129 0 0 chr3 67029270 67029332 -92570451 + (TG)n Simple_repeat Simple_repeat 2 63 0 4 1096 619 304 98 5 chr3 67029779 67029984 -92569799 + ID_B1 SINE B4 1 224 0 4 1096 1183 88 12 0 chr3 67030681 67030841 -92568942 - B2_Mm2 SINE B2 -33 162 1 4 1096 186 43 0 0 chr3 67030847 67030870 -92568913 + (T)n Simple_repeat Simple_repeat 1 23 0 4 1096 265 369 56 7 chr3 67030883 67031025 -92568758 - MLT1A1 LTR MaLR -190 218 70 4 1096 225 0 0 0 chr3 67031322 67031347 -92568436 + (TGG)n Simple_repeat Simple_repeat 1 25 0 4 1096 235 320 113 0 chr3 67031544 67031641 -92568142 - PB1D10 SINE Alu -7 110 3 5 1096 24 32 0 0 chr3 67032246 67032277 -92567506 + AT_rich Low_complexity Low_complexity 1 31 0 5 1096 708 246 294 18 chr3 67032612 67032939 -92566844 + Lx8 LINE L1 6935 7351 -122 5 1096 26 0 0 0 chr3 67037214 67037240 -92562543 + AT_rich Low_complexity Low_complexity 1 26 0 5 1096 317 296 47 94 chr3 67037817 67037966 -92561817 + MIRc SINE MIR 7 148 -120 5 1096 234 333 79 33 chr3 67038727 67038879 -92560904 + L2a LINE L2 3216 3374 -52 5 1096 21 0 0 0 chr3 67038983 67039004 -92560779 + AT_rich Low_complexity Low_complexity 1 21 0 5 1096 299 286 75 19 chr3 67039062 67039169 -92560614 + PB1D7 SINE Alu 5 120 0 5 1096 213 39 0 0 chr3 67039178 67039204 -92560579 + (CTCA)n Simple_repeat Simple_repeat 4 29 0 5 1096 24 32 0 0 chr3 67039398 67039429 -92560354 + AT_rich Low_complexity Low_complexity 1 31 0 5 1096 3108 46 3 0 chr3 67039429 67039817 -92559966 - L1_Mm LINE L1 -366 5517 5129 6 1096 1262 93 6 0 chr3 67039820 67040003 -92559780 + L1_Mus2 LINE L1 6383 6566 0 6 1096 396 0 0 0 chr3 67040113 67040157 -92559626 + (TG)n Simple_repeat Simple_repeat 2 45 0 6 1096 544 301 38 44 chr3 67040159 67040319 -92559464 - B3A SINE B2 -17 181 23 6 1096 336 316 50 7 chr3 67040470 67040610 -92559173 + B1F SINE Alu 3 148 -1 6 1096 1206 124 11 0 chr3 67041304 67041481 -92558302 + B2_Mm1t SINE B2 1 179 -14 6 1096 27207 55 1 15 chr3 67041489 67045633 -92554150 - L1Md_F2 LINE L1 -8 6574 2473 6 1096 1242 34 0 0 chr3 67045633 67045780 -92554003 - B1_Mm SINE Alu 0 147 1 6 1096 27207 56 1 19 chr3 67045780 67045799 -92553984 - L1_Mm LINE L1 -3411 2472 2472 6 1096 243 0 0 0 chr3 67045799 67045826 -92553957 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 6 1096 27207 56 1 19 chr3 67045826 67045937 -92553846 - L1Md_F2 LINE L1 -3411 2472 2365 6 1096 2772 116 35 26 chr3 67045939 67046398 -92553385 + MMETn-int LTR ERVK 4382 4844 0 7 1096 1546 150 24 57 chr3 67046398 67046731 -92553052 + RLTRETN_Mm LTR ERVK 1 322 0 7 1096 1803 36 0 0 chr3 67046731 67046952 -92552831 - L1_Mm LINE L1 -3518 2365 2145 7 1096 270 286 16 40 chr3 67047074 67047198 -92552585 - L1M5 LINE L1 -361 5801 5681 7 1096 24 0 0 0 chr3 67047347 67047371 -92552412 + AT_rich Low_complexity Low_complexity 1 24 0 7 1096 407 274 35 0 chr3 67047518 67047631 -92552152 - Lx7 LINE L1 -374 7322 7206 7 1096 5821 220 17 18 chr3 67047714 67048919 -92550864 - Lx6 LINE L1 -177 7283 6081 7 1096 260 278 179 17 chr3 67049114 67049231 -92550552 - MTC LTR MaLR -12 409 274 7 1096 1064 310 52 22 chr3 67049233 67049811 -92549972 + Lx7 LINE L1 6728 7335 -361 7 1096 26 0 0 0 chr3 67049926 67049952 -92549831 + AT_rich Low_complexity Low_complexity 1 26 0 7 1096 270 0 0 0 chr3 67050339 67050369 -92549414 + (TC)n Simple_repeat Simple_repeat 1 30 0 7 1096 330 26 0 0 chr3 67050369 67050407 -92549376 + (CA)n Simple_repeat Simple_repeat 1 39 0 8 1096 1595 218 146 2 chr3 67050485 67050909 -92548874 - Lx9 LINE L1 -8 7636 7152 8 1096 24 0 0 0 chr3 67050990 67051014 -92548769 + AT_rich Low_complexity Low_complexity 1 24 0 8 1096 279 333 143 33 chr3 67052051 67052296 -92547487 - L4 LINE RTE -646 1383 1112 8 1096 837 297 47 9 chr3 67052809 67053152 -92546631 + ORR1E LTR MaLR 2 357 -2 8 1096 1449 50 22 6 chr3 67054290 67054473 -92545310 + B2_Mm2 SINE B2 2 187 -8 8 1096 265 324 17 35 chr3 67054703 67054818 -92544965 + PB1D10 SINE Alu 2 114 -3 8 1096 1027 91 0 0 chr3 67054826 67054958 -92544825 + B1_Mus1 SINE Alu 2 133 -15 8 1096 180 0 0 0 chr3 67054960 67054980 -92544803 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 8 1096 3837 79 6 33 chr3 67054980 67055528 -92544255 + L1_Mus3 LINE L1 6094 6626 -12 8 1096 24690 132 54 22 chr3 67055574 67061652 -92538131 + L1_Mus3 LINE L1 365 6636 -2 9 1096 189 109 65 0 chr3 67062804 67062850 -92536933 + CT-rich Low_complexity Low_complexity 1 49 0 9 1096 667 234 104 7 chr3 67062901 67063084 -92536699 - B4A SINE B4 -14 278 76 9 1096 22 56 0 0 chr3 67063128 67063164 -92536619 + AT_rich Low_complexity Low_complexity 1 36 0 9 1096 207 167 0 0 chr3 67063381 67063417 -92536366 + (CA)n Simple_repeat Simple_repeat 1 36 0 9 1096 359 305 134 0 chr3 67064559 67064723 -92535060 - L1ME4a LINE L1 -252 5872 5687 9 1096 431 289 103 21 chr3 67065107 67065301 -92534482 + MIR SINE MIR 19 228 -34 9 1096 234 355 166 36 chr3 67066236 67066429 -92533354 - L2b LINE L2 -9 3366 3149 9 1096 319 264 156 23 chr3 67068185 67068313 -92531470 - MER103 DNA DNA -1 165 21 9 1096 23 0 0 0 chr3 67068695 67068718 -92531065 + AT_rich Low_complexity Low_complexity 1 23 0 9 1096 23 54 0 0 chr3 67069823 67069860 -92529923 + AT_rich Low_complexity Low_complexity 1 37 0 1 1096 578 246 42 0 chr3 67070068 67070210 -92529573 + B1F2 SINE Alu 1 148 -1 1 1096 182 340 20 0 chr3 67071103 67071153 -92528630 - MIR SINE MIR -141 67 17 1 1096 21 82 0 0 chr3 67071954 67072003 -92527780 + AT_rich Low_complexity Low_complexity 1 49 0 1 1096 962 92 0 21 chr3 67072477 67072622 -92527161 - B1_Mus1 SINE Alu -1 147 6 1 1096 297 167 0 0 chr3 67072611 67072665 -92527118 - B1_Mus1 SINE Alu -93 55 2 1 1096 252 294 0 0 chr3 67072667 67072718 -92527065 + PB1 SINE Alu 51 101 -26 1 1096 1293 94 16 6 chr3 67073209 67073391 -92526392 - B2_Mm2 SINE B2 -9 186 3 1 1096 289 306 0 0 chr3 67074104 67074176 -92525607 - MIR SINE MIR -23 239 168 1 1096 5191 67 10 16 chr3 67074223 67074931 -92524852 + L1_Mus2 LINE L1 5863 6566 0 1 1096 23 0 0 0 chr3 67075025 67075048 -92524735 + AT_rich Low_complexity Low_complexity 1 23 0 1 1096 202 291 23 23 chr3 67075080 67075118 -92524665 + (TCTG)n Simple_repeat Simple_repeat 2 40 0 1 1096 644 0 13 0 chr3 67075118 67075194 -92524589 + (TC)n Simple_repeat Simple_repeat 2 78 0 1 1096 202 291 23 23 chr3 67075194 67075243 -92524540 + (TCTG)n Simple_repeat Simple_repeat 1 49 0 1 1096 29 0 0 0 chr3 67075673 67075702 -92524081 + AT_rich Low_complexity Low_complexity 1 29 0 1 1096 32 67 0 0 chr3 67076053 67076113 -92523670 + AT_rich Low_complexity Low_complexity 1 60 0 1 1096 7113 75 4 5 chr3 67076113 67077080 -92522703 - L1_Mus4 LINE L1 -7 6629 5688 1 1096 921 251 14 19 chr3 67077723 67077938 -92521845 + B3 SINE B2 2 215 -1 1 1096 6036 48 4 5 chr3 67078331 67079084 -92520699 + L1Md_F3 LINE L1 5833 6584 0 1 1096 200 300 0 0 chr3 67079090 67079140 -92520643 + MER5A DNA MER1_type 29 78 -111 1 1096 221 328 0 17 chr3 67079398 67079457 -92520326 + ID4 SINE ID 4 61 -22 1 1096 2116 295 13 38 chr3 67079481 67080248 -92519535 - Lx5 LINE L1 -18 7032 6432 1 1096 22 70 0 0 chr3 67080480 67080523 -92519260 + AT_rich Low_complexity Low_complexity 1 43 0 1 1096 316 321 37 9 chr3 67080534 67080641 -92519142 + PB1 SINE Alu 10 119 -8 1 1096 193 294 0 0 chr3 67080703 67080754 -92519029 + MER5A DNA MER1_type 130 180 -9 1 1096 249 33 0 0 chr3 67081681 67081711 -92518072 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 1 1096 21 0 0 0 chr3 67082074 67082095 -92517688 + AT_rich Low_complexity Low_complexity 1 21 0 1 1096 264 280 122 27 chr3 67082465 67082612 -92517171 + RSINE1 SINE B4 4 164 -1 1 1096 211 288 68 0 chr3 67084518 67084591 -92515192 + MIRc SINE MIR 85 162 -106 1 1096 2379 153 37 10 chr3 67084749 67085157 -92514626 + MTC LTR MaLR 1 419 -2 1 1096 436 278 83 26 chr3 67086032 67086224 -92513559 - B3 SINE B2 -8 208 6 1 1096 308 301 96 25 chr3 67087470 67087627 -92512156 + MIRb SINE MIR 93 260 -8 1 1096 210 265 5 47 chr3 67089222 67089291 -92510492 - L2b LINE L2 -209 3178 3113 1 1096 226 246 17 17 chr3 67090169 67090227 -92509556 - ID2 SINE ID -22 61 4 1 1096 1161 43 0 0 chr3 67090601 67090741 -92509042 + B1_Mus2 SINE Alu 2 141 -6 1 1096 216 0 0 0 chr3 67090742 67090766 -92509017 + (CAA)n Simple_repeat Simple_repeat 1 24 0 1 1096 2032 208 4 62 chr3 67091125 67091592 -92508191 - Lx5 LINE L1 -3 7047 6608 1 1096 433 357 0 0 chr3 67094546 67094686 -92505097 + RSINE1 SINE B4 24 163 -2 1 1096 498 272 148 37 chr3 67095169 67095415 -92504368 + Lx3C LINE L1 6715 6995 -5 1 1096 431 226 69 9 chr3 67097129 67097245 -92502538 - B1F SINE Alu -3 146 24 1 1096 26638 29 0 0 chr3 67097245 67100427 -92499356 + L1Md_T LINE L1 2405 5586 -297 1 1096 8951 7 0 0 chr3 67100427 67101447 -92498336 + L1Md_T LINE L1 5587 6582 0 1 1096 211 284 122 47 chr3 67102011 67102159 -92497624 - MIR SINE MIR -33 229 71 1 1096 3157 141 8 0 chr3 67102277 67102796 -92496987 + L1_Mm LINE L1 4952 5474 -409 1 1096 2427 131 3 3 chr3 67102792 67103176 -92496607 + L1_Mm LINE L1 4524 4907 -976 1 1096 866 145 119 12 chr3 67103636 67103804 -92495979 - B2_Mm2 SINE B2 -9 186 1 1 1096 531 323 12 53 chr3 67104502 67104672 -92495111 + RSINE1 SINE B4 3 165 0 1 1096 22 0 0 0 chr3 67104675 67104697 -92495086 + AT_rich Low_complexity Low_complexity 1 22 0 1 1096 189 0 0 0 chr3 67105283 67105304 -92494479 + (A)n Simple_repeat Simple_repeat 1 21 0 1 1096 924 164 5 60 chr3 67105430 67105631 -92494152 + Lx4A LINE L1 6863 7052 -6 1 1096 26 0 0 0 chr3 67105631 67105657 -92494126 + AT_rich Low_complexity Low_complexity 1 26 0 1 1096 22 0 0 0 chr3 67106087 67106109 -92493674 + AT_rich Low_complexity Low_complexity 1 22 0 1 1096 5422 250 42 26 chr3 67106433 67107807 -92491976 + Lx6 LINE L1 6027 7422 -38 1 1096 54 68 0 0 chr3 67107822 67107925 -92491858 + AT_rich Low_complexity Low_complexity 1 103 0 1 1096 258 233 82 72 chr3 67108110 67108207 -92491576 - Lx8 LINE L1 -3 7470 7373 1 1096 22 0 0 0 chr3 67108372 67108394 -92491389 + AT_rich Low_complexity Low_complexity 1 22 0 1 1097 832 325 17 14 chr3 67109146 67109393 -92490390 - ID_B1 SINE B4 -20 272 23 1 1097 390 280 67 8 chr3 67109541 67109660 -92490123 - RSINE1 SINE B4 -31 134 9 1 1097 257 254 191 44 chr3 67110440 67110576 -92489207 + RSINE1 SINE B4 2 157 -8 1 1097 842 172 18 18 chr3 67110644 67110810 -92488973 + B2_Mm2 SINE B2 2 167 -28 1 1097 248 130 22 0 chr3 67110810 67110856 -92488927 + GA-rich Low_complexity Low_complexity 3 49 0 1 1097 520 179 17 0 chr3 67111742 67111859 -92487924 + GA-rich Low_complexity Low_complexity 2 120 0 1 1097 396 0 0 0 chr3 67112082 67112126 -92487657 + (TC)n Simple_repeat Simple_repeat 1 44 0 1 1097 300 111 0 0 chr3 67112127 67112172 -92487611 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 1097 549 0 0 0 chr3 67112957 67113018 -92486765 + (TCC)n Simple_repeat Simple_repeat 1 61 0 1 1097 28 0 0 0 chr3 67113405 67113433 -92486350 + AT_rich Low_complexity Low_complexity 1 28 0 1 1097 29 28 0 0 chr3 67113536 67113572 -92486211 + AT_rich Low_complexity Low_complexity 1 36 0 1 1097 360 0 0 0 chr3 67115710 67115750 -92484033 + (TG)n Simple_repeat Simple_repeat 2 41 0 1 1097 210 393 33 22 chr3 67116106 67116197 -92483586 - MIR SINE MIR -149 113 22 1 1097 218 220 0 20 chr3 67116204 67116255 -92483528 + (TTTG)n Simple_repeat Simple_repeat 2 51 0 1 1097 21 36 0 0 chr3 67116859 67116887 -92482896 + AT_rich Low_complexity Low_complexity 1 28 0 1 1097 2947 286 76 22 chr3 67117006 67118120 -92481663 - Lx7 LINE L1 -323 7373 6200 1 1097 6491 171 63 69 chr3 67118125 67118799 -92480984 - Lx5 LINE L1 -3 7047 6369 1 1097 315 0 0 0 chr3 67118799 67118834 -92480949 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1 1097 568 26 13 0 chr3 67118837 67118913 -92480870 - B1_Mm SINE Alu 0 147 71 1 1097 6491 167 41 34 chr3 67118913 67119920 -92479863 - Lx5 LINE L1 -682 6365 5288 1 1097 1721 211 126 147 chr3 67119924 67120542 -92479241 - RMER19C LTR ERVK -6 605 1 1 1097 2203 161 14 92 chr3 67120543 67121096 -92478687 - Lx5 LINE L1 -583 5294 4785 1 1097 411 284 134 40 chr3 67121095 67121348 -92478435 - Lx7 LINE L1 -1483 6213 5937 1 1097 408 286 69 31 chr3 67121486 67121616 -92478167 - B1_Mur2 SINE Alu -14 135 1 1 1097 255 274 83 66 chr3 67121636 67121757 -92478026 + Kanga1a DNA Tc2 41 163 -591 1 1097 456 271 127 0 chr3 67121868 67121986 -92477797 + ID_B1 SINE B4 79 211 -13 1 1097 251 160 0 0 chr3 67122122 67122172 -92477611 - L1MA5 LINE L1 -21 6279 6230 1 1097 497 268 86 15 chr3 67122259 67122456 -92477327 + Kanga1a DNA Tc2 418 628 -126 1 1097 29 47 0 0 chr3 67122787 67122830 -92476953 + AT_rich Low_complexity Low_complexity 1 43 0 1 1097 27 29 0 0 chr3 67123912 67123946 -92475837 + AT_rich Low_complexity Low_complexity 1 34 0 1 1097 192 40 0 0 chr3 67124986 67125011 -92474772 + (TTG)n Simple_repeat Simple_repeat 1 25 0 1 1097 317 288 0 0 chr3 67126021 67126094 -92473689 - ID4 SINE ID 0 83 11 1 1097 442 351 58 14 chr3 67126461 67126669 -92473114 + MER58A DNA MER1_type 7 223 -1 1 1097 253 341 11 34 chr3 67127035 67127123 -92472660 - MER5A DNA MER1_type -80 109 24 1 1097 621 289 32 13 chr3 67127428 67127582 -92472201 + RSINE1 SINE B4 9 165 0 1 1097 182 353 11 45 chr3 67127958 67128047 -92471736 + MIRc SINE MIR 44 129 -139 1 1097 229 178 68 0 chr3 67129172 67129245 -92470538 + Lx3C LINE L1 6897 6974 -2 1 1097 1466 70 0 5 chr3 67129278 67129466 -92470317 - B2_Mm2 SINE B2 -8 187 1 1 1097 831 147 86 29 chr3 67129877 67130052 -92469731 - B2_Mm2 SINE B2 -8 187 3 1 1097 213 39 0 0 chr3 67130758 67130784 -92468999 + (TA)n Simple_repeat Simple_repeat 2 27 0 1 1097 6941 77 0 1 chr3 67131031 67131990 -92467793 + L1_Mm LINE L1 4840 5797 -86 1 1097 2738 54 0 0 chr3 67131988 67132342 -92467441 + L1Md_F2 LINE L1 5231 5584 -299 1 1097 8080 44 3 5 chr3 67132346 67133343 -92466440 + L1Md_F2 LINE L1 5588 6582 0 1 1097 6187 59 1 11 chr3 67133341 67134132 -92465651 + L1_Mus2 LINE L1 5783 6565 -1 1 1097 1612 270 114 18 chr3 67134833 67135334 -92464449 - RMER15 LTR ERVL 0 575 27 1 1097 181 316 101 0 chr3 67135499 67135578 -92464205 + L2 LINE L2 1971 2057 -1362 1 1097 212 335 243 23 chr3 67135820 67136083 -92463700 + L2 LINE L2 2426 2746 -673 1 1097 1230 219 21 4 chr3 67136114 67136393 -92463390 - RMER1C Other Other -294 1048 765 1 1097 586 104 170 3 chr3 67136492 67136623 -92463160 + L1Md_F2 LINE L1 6434 6581 -1 1 1097 523 152 29 48 chr3 67136764 67136779 -92463004 - B1_Mur4 SINE Alu -2 148 138 1 1097 386 20 0 19 chr3 67136779 67136831 -92462952 + (TTG)n Simple_repeat Simple_repeat 1 51 0 1 1097 541 171 11 0 chr3 67136831 67136919 -92462864 - B1_Mus2 SINE Alu -13 134 46 1 1097 608 205 219 7 chr3 67137013 67137178 -92462605 - ORR1D1 LTR MaLR -1 383 186 2 1097 276 30 0 0 chr3 67137178 67137211 -92462572 + (CTCA)n Simple_repeat Simple_repeat 1 33 0 2 1097 253 339 96 53 chr3 67137211 67137235 -92462548 - ORR1D1 LTR MaLR -173 186 163 2 1097 371 113 16 0 chr3 67137247 67137309 -92462474 + (GA)n Simple_repeat Simple_repeat 2 64 0 2 1097 758 195 71 0 chr3 67137309 67137478 -92462305 - ORR1D1 LTR MaLR -193 181 1 2 1097 247 383 104 54 chr3 67137573 67137852 -92461931 - L2 LINE L2 -1032 2387 2095 2 1097 6353 63 59 1 chr3 67137949 67138924 -92460859 + L1Md_F2 LINE L1 5524 6582 0 2 1097 1236 53 0 29 chr3 67140895 67141069 -92458714 - L1Md_F2 LINE L1 -3 6579 6411 2 1097 576 245 94 28 chr3 67141372 67141528 -92458255 + L1ME1 LINE L1 5285 5445 -734 2 1097 3151 66 0 8 chr3 67141528 67141927 -92457856 - MTA_Mm LTR MaLR 0 396 1 2 1097 576 245 94 28 chr3 67141927 67142056 -92457727 + L1ME1 LINE L1 5446 5589 -590 2 1097 309 238 32 0 chr3 67142062 67142125 -92457658 - ID4_ SINE ID -7 76 12 2 1097 521 312 19 25 chr3 67142216 67142374 -92457409 + RSINE1 SINE B4 3 159 -6 2 1097 274 252 69 50 chr3 67142595 67142754 -92457029 + L1ME1 LINE L1 5918 6079 -100 2 1097 198 0 0 0 chr3 67143085 67143107 -92456676 + (T)n Simple_repeat Simple_repeat 1 22 0 2 1097 219 56 0 77 chr3 67143114 67143153 -92456630 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 2 1097 21 45 0 22 chr3 67144108 67144128 -92455655 + AT_rich Low_complexity Low_complexity 1 20 0 2 1097 299 295 26 0 chr3 67144128 67144206 -92455577 + ID4 SINE ID 2 81 -2 2 1097 21 45 0 22 chr3 67144206 67144231 -92455552 + AT_rich Low_complexity Low_complexity 1 25 0 2 1097 360 0 0 0 chr3 67146684 67146724 -92453059 + (TC)n Simple_repeat Simple_repeat 1 40 0 2 1097 287 274 60 45 chr3 67146858 67146992 -92452791 - MIR SINE MIR -96 166 31 2 1097 879 211 100 0 chr3 67147012 67147202 -92452581 + B3 SINE B2 1 209 -7 2 1097 22 88 0 0 chr3 67148215 67148272 -92451511 + AT_rich Low_complexity Low_complexity 1 57 0 2 1097 436 136 0 11 chr3 67148780 67148869 -92450914 + Lx3A LINE L1 6869 6956 -25 2 1097 330 67 0 0 chr3 67149076 67149121 -92450662 + (TA)n Simple_repeat Simple_repeat 1 45 0 2 1097 429 261 44 22 chr3 67149447 67149584 -92450199 - B1F SINE Alu -9 140 1 2 1097 23 0 0 0 chr3 67150471 67150494 -92449289 + AT_rich Low_complexity Low_complexity 1 23 0 2 1097 506 301 14 14 chr3 67152346 67152494 -92447289 + RSINE1 SINE B4 2 149 -16 2 1097 729 230 95 20 chr3 67152869 67153069 -92446714 - B3 SINE B2 0 216 2 2 1097 1217 181 79 39 chr3 67156094 67156399 -92443384 + Lx5 LINE L1 6734 7050 0 2 1097 224 333 73 7 chr3 67156415 67156551 -92443232 + L4 LINE RTE 839 983 -1046 2 1097 386 296 154 35 chr3 67156716 67156975 -92442808 + B4A SINE B4 2 291 -1 2 1097 404 260 56 108 chr3 67157281 67157531 -92442252 + ORSL-2b DNA Tip100 72 308 -200 2 1097 197 299 44 53 chr3 67157786 67157899 -92441884 + L2a LINE L2 3271 3382 -44 2 1097 193 304 18 18 chr3 67158285 67158342 -92441441 + L2c LINE L2 3292 3348 -39 2 1097 270 276 176 95 chr3 67158509 67158646 -92441137 + L1MB8 LINE L1 5781 5938 -240 2 1097 876 99 130 0 chr3 67158646 67158777 -92441006 + B1_Mus1 SINE Alu 1 148 0 2 1097 270 276 176 95 chr3 67158777 67158996 -92440787 + L1MB8 LINE L1 5939 6166 -12 2 1097 209 238 0 0 chr3 67159104 67159146 -92440637 + (TA)n Simple_repeat Simple_repeat 2 43 0 2 1097 249 255 70 46 chr3 67160975 67161059 -92438724 - MTEa LTR MaLR -18 361 278 2 1097 288 77 0 0 chr3 67162807 67162846 -92436937 + (TTCC)n Simple_repeat Simple_repeat 3 41 0 2 1097 693 179 0 0 chr3 67162985 67163097 -92436686 - B3 SINE B2 -103 113 2 2 1097 261 0 0 0 chr3 67163820 67163849 -92435934 + (A)n Simple_repeat Simple_repeat 1 29 0 2 1097 294 219 108 54 chr3 67163881 67163918 -92435865 + MT2B LTR ERVL 121 164 -437 2 1097 678 139 72 7 chr3 67163918 67164056 -92435727 + B1_Mur4 SINE Alu 3 149 -1 2 1097 603 267 123 101 chr3 67164332 67164530 -92435253 - MTEa LTR MaLR 0 379 171 2 1097 624 141 380 0 chr3 67164530 67164693 -92435090 - URR1B DNA MER1_type 0 225 1 2 1097 603 267 123 101 chr3 67164693 67164860 -92434923 - MTEa LTR MaLR -209 170 6 2 1097 292 185 19 0 chr3 67165869 67165923 -92433860 - RMER1A Other Other -879 151 97 2 1097 1907 141 174 56 chr3 67165918 67166260 -92433523 + RMER1A Other Other 506 885 -145 2 1097 183 42 0 0 chr3 67166260 67166284 -92433499 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2 1097 1907 141 174 56 chr3 67166284 67166407 -92433376 + RMER1A Other Other 886 1026 -4 2 1097 609 325 60 53 chr3 67166943 67167236 -92432547 + RMER5 LTR ERV1 60 357 -177 2 1097 1140 210 107 35 chr3 67167236 67167581 -92432202 + ORR1D1 LTR MaLR 5 374 0 2 1097 609 325 60 53 chr3 67167581 67167667 -92432116 + RMER5 LTR ERV1 358 441 -93 2 1097 468 199 130 85 chr3 67168857 67169064 -92430719 + MLT1G3 LTR MaLR 372 584 -11 2 1097 1372 164 10 261 chr3 67169134 67169437 -92430346 + ORR1C1 LTR MaLR 1 180 -198 2 1097 663 48 0 0 chr3 67169437 67169520 -92430263 + (TCC)n Simple_repeat Simple_repeat 3 85 0 2 1097 1372 164 10 261 chr3 67169520 67169721 -92430062 + ORR1C1 LTR MaLR 181 378 0 2 1097 26 30 0 0 chr3 67170307 67170340 -92429443 + AT_rich Low_complexity Low_complexity 1 33 0 2 1097 287 268 0 0 chr3 67171113 67171169 -92428614 + ID4_ SINE ID 28 83 0 2 1097 432 260 55 39 chr3 67171735 67171863 -92427920 + MER102b DNA MER1_type 5 134 -207 2 1097 257 353 77 0 chr3 67172025 67172195 -92427588 + MIR SINE MIR 80 262 0 2 1097 342 0 0 0 chr3 67172319 67172357 -92427426 + (TTGG)n Simple_repeat Simple_repeat 2 39 0 2 1097 3901 98 14 12 chr3 67172397 67172989 -92426794 + L1_Mus4 LINE L1 6058 6636 0 2 1097 193 333 52 31 chr3 67173029 67173125 -92426658 + MIR SINE MIR 8 105 -157 2 1097 204 140 45 23 chr3 67173310 67173354 -92426429 + GA-rich Low_complexity Low_complexity 2 46 0 2 1097 322 303 131 67 chr3 67173940 67174223 -92425560 - RMER5 LTR ERV1 -151 383 83 2 1097 304 284 58 19 chr3 67174605 67174709 -92425074 + L1ME3 LINE L1 5968 6075 -87 2 1097 1515 233 26 35 chr3 67174786 67175209 -92424574 - MTD LTR MaLR 0 419 1 2 1097 264 351 23 8 chr3 67175846 67175975 -92423808 + MIRb SINE MIR 114 244 -24 2 1097 180 0 0 0 chr3 67176920 67176940 -92422843 + (TGGGGG)n Simple_repeat Simple_repeat 1 20 0 2 1097 283 316 132 6 chr3 67177341 67177500 -92422283 - MER113 DNA MER1_type -152 369 191 2 1097 180 111 0 0 chr3 67177541 67177568 -92422215 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 2 1097 407 189 70 112 chr3 67178882 67178999 -92420784 - B1_Mur1 SINE Alu 0 149 37 2 1097 885 45 0 0 chr3 67178999 67179109 -92420674 + (TCC)n Simple_repeat Simple_repeat 3 112 0 2 1097 407 189 70 112 chr3 67179109 67179134 -92420649 - B1_Mur1 SINE Alu -113 36 13 2 1097 959 171 193 0 chr3 67180041 67180222 -92419561 - B3 SINE B2 0 216 1 2 1097 33 0 0 0 chr3 67180453 67180486 -92419297 + AT_rich Low_complexity Low_complexity 1 33 0 2 1097 296 281 102 51 chr3 67180798 67181053 -92418730 + L1MEb LINE L1 362 629 -5465 2 1097 363 263 42 8 chr3 67181132 67181251 -92418532 + L1MEb LINE L1 737 859 -5235 2 1097 409 174 72 12 chr3 67181309 67181442 -92418341 + L1MEb LINE L1 871 1014 -5080 2 1097 270 257 92 26 chr3 67181519 67181595 -92418188 + MLT1D LTR MaLR 5 85 -420 2 1097 562 342 210 21 chr3 67181657 67182131 -92417652 - MLT1F2 LTR MaLR 0 569 1 2 1097 849 248 47 14 chr3 67182278 67182481 -92417302 + ID_B1 SINE B4 2 213 -11 2 1097 207 0 0 0 chr3 67182481 67182504 -92417279 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 2 1097 324 248 25 33 chr3 67182860 67182981 -92416802 + L1ME1 LINE L1 5841 5960 -219 2 1097 819 283 97 45 chr3 67182984 67183314 -92416469 + MTEa LTR MaLR 1 347 -32 2 1097 250 270 0 0 chr3 67183812 67183875 -92415908 + T-rich Low_complexity Low_complexity 1 63 0 2 1097 876 306 101 21 chr3 67183883 67184571 -92415212 + L1_Rod LINE L1 1182 1924 -3923 2 1097 414 223 53 0 chr3 67184815 67184944 -92414839 + L1_Rod LINE L1 2227 2364 -3522 2 1097 261 0 0 0 chr3 67184961 67184990 -92414793 + (CA)n Simple_repeat Simple_repeat 1 29 0 2 1097 2837 176 34 4 chr3 67185034 67185535 -92414248 + RMER20A LTR ERVK 1 516 0 2 1097 445 290 122 25 chr3 67185549 67185862 -92413921 + L1_Rod LINE L1 2565 2918 -3225 2 1097 1872 289 47 106 chr3 67185907 67187423 -92412360 + L1_Mur3 LINE L1 3149 4575 -1305 2 1097 491 193 32 3 chr3 67187429 67187539 -92412244 + PB1D9 SINE Alu 1 117 0 2 1097 394 327 126 0 chr3 67187747 67187906 -92411877 - B3A SINE B2 -19 179 1 2 1097 24 113 0 0 chr3 67188138 67188253 -92411530 + AT_rich Low_complexity Low_complexity 1 115 0 2 1097 1720 158 51 107 chr3 67189044 67189419 -92410364 - ORR1B1 LTR MaLR 0 394 41 2 1097 9632 137 47 123 chr3 67189426 67191550 -92408233 - ORR1B1-int LTR MaLR 0 1963 1 2 1097 1055 139 280 55 chr3 67191552 67191832 -92407951 - ORR1B1 LTR MaLR -6 323 2 2 1097 24 0 0 0 chr3 67192862 67192886 -92406897 + AT_rich Low_complexity Low_complexity 1 24 0 2 1097 310 224 117 87 chr3 67192908 67193082 -92406701 - MLT1A0 LTR MaLR -13 361 195 2 1097 431 236 55 79 chr3 67193261 67193463 -92406320 + RMER17C-int LTR ERVK 2627 2823 -415 2 1097 440 235 80 51 chr3 67193511 67193686 -92406097 + RMER17C-int LTR ERVK 2918 3097 -141 2 1097 24 32 0 0 chr3 67193762 67193793 -92405990 + AT_rich Low_complexity Low_complexity 1 31 0 2 1097 2215 149 23 18 chr3 67193987 67194174 -92405609 - RMER10B LTR ERVL 0 398 205 2 1097 827 20 10 0 chr3 67194174 67194275 -92405508 + (GAA)n Simple_repeat Simple_repeat 3 104 0 2 1097 2215 149 23 18 chr3 67194275 67194483 -92405300 - RMER10B LTR ERVL -194 204 2 2 1097 26 30 0 0 chr3 67194504 67194537 -92405246 + AT_rich Low_complexity Low_complexity 1 33 0 2 1097 215 205 48 0 chr3 67196079 67196162 -92403621 + (CA)n Simple_repeat Simple_repeat 2 88 0 2 1097 433 295 100 39 chr3 67196222 67196402 -92403381 - B3A SINE B2 -1 197 7 2 1097 208 207 51 17 chr3 67196500 67196559 -92403224 + (TATATG)n Simple_repeat Simple_repeat 3 63 0 2 1097 372 43 0 0 chr3 67196564 67196610 -92403173 + (TG)n Simple_repeat Simple_repeat 1 46 0 2 1097 265 305 101 37 chr3 67198000 67198109 -92401674 - PB1D7 SINE Alu -3 117 2 2 1097 464 321 22 18 chr3 67198234 67198459 -92401324 + RLTR15 LTR ERVK 117 342 -17 2 1097 22 0 0 0 chr3 67200012 67200034 -92399749 + AT_rich Low_complexity Low_complexity 1 22 0 2 1097 305 308 31 77 chr3 67200253 67200383 -92399400 + RSINE1 SINE B4 42 165 0 2 1097 479 207 79 26 chr3 67201041 67201155 -92398628 + B3A SINE B2 78 197 -1 3 1097 377 333 53 66 chr3 67201889 67202040 -92397743 + B4A SINE B4 3 151 -141 3 1097 1139 82 0 0 chr3 67202500 67202646 -92397137 + B1_Mus1 SINE Alu 3 148 0 3 1097 277 281 87 102 chr3 67203259 67203386 -92396397 + MER3 DNA MER1_type 6 130 -79 3 1097 1680 212 72 77 chr3 67204112 67204632 -92395151 - RLTR20C LTR ERVK -1 577 3 3 1097 486 250 28 0 chr3 67204811 67204919 -92394864 + PB1D7 SINE Alu 3 113 -7 3 1097 29424 102 24 8 chr3 67204964 67208977 -92390806 + L1_Mus2 LINE L1 675 4733 -1150 3 1097 216 0 0 0 chr3 67208977 67209001 -92390782 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 3 1097 29424 73 12 16 chr3 67209001 67210807 -92388976 + L1_Mus2 LINE L1 4734 6565 -1 3 1097 21 0 0 0 chr3 67210975 67210996 -92388787 + AT_rich Low_complexity Low_complexity 1 21 0 3 1097 4335 34 2 0 chr3 67211326 67211869 -92387914 + L1Md_F2 LINE L1 6058 6582 0 3 1097 339 109 0 0 chr3 67211869 67211915 -92387868 + ORR1A4 LTR MaLR 276 321 -8 3 1097 216 0 0 0 chr3 67212536 67212560 -92387223 + (A)n Simple_repeat Simple_repeat 1 24 0 3 1097 1026 67 0 0 chr3 67212790 67212924 -92386859 + B1_Mm SINE Alu 11 144 -3 3 1097 478 61 24 12 chr3 67212924 67213007 -92386776 + (CAAA)n Simple_repeat Simple_repeat 2 85 0 3 1097 771 251 44 109 chr3 67213173 67213521 -92386262 - RMER10A LTR ERVL -25 417 65 3 1097 497 217 0 32 chr3 67213677 67213801 -92385982 + L1Md_F2 LINE L1 306 425 -6191 3 1097 35685 44 2 5 chr3 67213799 67219427 -92380356 + L1Md_F2 LINE L1 928 6520 -62 3 1097 1093 265 19 12 chr3 67219424 67219680 -92380103 - Lx6 LINE L1 -279 7181 6924 3 1097 4222 120 51 43 chr3 67219684 67220427 -92379356 - RMER6A LTR ERVK 0 756 8 3 1097 500 168 21 0 chr3 67220433 67220528 -92379255 - Lx7 LINE L1 -759 6937 6841 3 1097 2042 117 259 27 chr3 67220528 67220975 -92378808 - RLTR6_Mm LTR ERV1 -67 587 37 3 1097 234 238 200 38 chr3 67220977 67221082 -92378701 - RLTR6_Mm LTR ERV1 -532 122 1 3 1097 60832 34 13 0 chr3 67221082 67228667 -92371116 - RLTR6-int LTR ERV1 0 7778 1 3 1097 1929 110 276 45 chr3 67228667 67229116 -92370667 - RLTR6_Mm LTR ERV1 -65 589 37 3 1097 245 209 209 0 chr3 67229156 67229223 -92370560 - RLTR6_Mm LTR ERV1 -573 81 1 3 1097 491 191 0 0 chr3 67229223 67229312 -92370471 - Lx7 LINE L1 -855 6841 6753 3 1097 3683 166 150 10 chr3 67229324 67229812 -92369971 + RMER13A LTR ERVK 1 552 -308 3 1097 189 0 0 0 chr3 67229812 67229833 -92369950 + (CA)n Simple_repeat Simple_repeat 1 21 0 3 1097 3683 174 59 11 chr3 67229833 67230115 -92369668 + RMER13A LTR ERVK 553 853 -7 3 1097 4328 197 110 41 chr3 67230132 67230665 -92369118 - Lx7 LINE L1 -956 6740 6189 3 1097 1066 90 7 0 chr3 67230665 67230809 -92368974 - B1_Mus2 SINE Alu 0 147 3 3 1097 4328 180 67 19 chr3 67230809 67231428 -92368355 - Lx7 LINE L1 -1508 6188 5510 3 1097 300 53 0 0 chr3 67232604 67232642 -92367141 + (A)n Simple_repeat Simple_repeat 1 38 0 3 1097 380 281 75 17 chr3 67233070 67233244 -92366539 - L2 LINE L2 -842 2577 2394 3 1097 937 135 60 22 chr3 67233354 67233536 -92366247 - B2_Mm2 SINE B2 -6 189 1 3 1097 575 253 14 7 chr3 67233662 67233809 -92365974 - B1_Mur1 SINE Alu 0 149 2 3 1097 21 0 0 0 chr3 67233838 67233859 -92365924 + AT_rich Low_complexity Low_complexity 1 21 0 3 1097 608 213 107 0 chr3 67235206 67235356 -92364427 + B3 SINE B2 35 200 -16 3 1097 1196 138 108 0 chr3 67235843 67236046 -92363737 - URR1B DNA MER1_type 0 225 1 3 1097 1873 191 120 4 chr3 67236283 67236750 -92363033 - RMER5 LTR ERV1 0 534 14 3 1097 645 215 197 69 chr3 67237776 67238066 -92361717 + MTD LTR MaLR 79 405 -14 3 1097 1404 206 60 30 chr3 67238100 67238465 -92361318 + MTD-int LTR MaLR 28 403 -855 3 1097 726 235 114 45 chr3 67238477 67238767 -92361016 + MTD-int LTR MaLR 922 1231 -27 3 1097 1247 34 0 0 chr3 67238772 67238918 -92360865 + B1_Mus2 SINE Alu 2 147 0 3 1097 848 260 115 13 chr3 67238971 67239345 -92360438 + MTD LTR MaLR 1 412 -7 3 1097 186 226 0 70 chr3 67239752 67239809 -92359974 + MIR SINE MIR 98 150 -112 3 1098 395 186 10 0 chr3 67240390 67240492 -92359291 + (TG)n Simple_repeat Simple_repeat 1 103 0 3 1098 299 257 13 39 chr3 67240836 67240913 -92358870 + ID4 SINE ID 6 80 -3 3 1098 4553 126 42 7 chr3 67240999 67241729 -92358054 - RMER6A LTR ERVK 0 756 1 3 1098 600 221 122 44 chr3 67241730 67241910 -92357873 - B3A SINE B2 -4 194 1 3 1098 263 164 268 37 chr3 67242695 67242777 -92357006 - URR1A DNA MER1_type -119 107 7 3 1098 362 255 59 0 chr3 67242777 67242879 -92356904 + PB1D10 SINE Alu 1 108 -9 3 1098 789 11 0 0 chr3 67243154 67243244 -92356539 + (TTTCC)n Simple_repeat Simple_repeat 5 94 0 3 1098 789 166 72 0 chr3 67243342 67243481 -92356302 - B1_Mur1 SINE Alu 0 149 1 3 1098 761 199 19 0 chr3 67244265 67244421 -92355362 - B3 SINE B2 -57 159 1 3 1098 768 277 136 113 chr3 67244549 67245140 -92354643 + L1MB3 LINE L1 5327 5961 -222 3 1098 416 304 72 7 chr3 67245140 67245279 -92354504 + B1F SINE Alu 2 149 0 3 1098 768 291 135 90 chr3 67245279 67245455 -92354328 + L1MB3 LINE L1 5962 6155 -28 3 1098 392 158 70 0 chr3 67245996 67246099 -92353684 + PB1D7 SINE Alu 7 120 0 3 1098 316 300 207 24 chr3 67246124 67246288 -92353495 - MER68 LTR ERVL -279 284 91 3 1098 369 236 99 139 chr3 67246710 67246912 -92352871 - MTEa LTR MaLR -185 194 1 3 1098 621 202 0 56 chr3 67247020 67247146 -92352637 - PB1D9 SINE Alu -1 119 1 3 1098 316 346 31 0 chr3 67247949 67248079 -92351704 + RSINE1 SINE B4 4 137 -28 3 1098 436 229 228 43 chr3 67248359 67248592 -92351191 + B4A SINE B4 2 277 -15 3 1098 21 57 0 0 chr3 67248658 67248693 -92351090 + AT_rich Low_complexity Low_complexity 1 35 0 3 1098 411 244 17 9 chr3 67249038 67249154 -92350629 - PB1D10 SINE Alu 0 117 1 3 1098 767 191 49 7 chr3 67249198 67249340 -92350443 + B1_Mus1 SINE Alu 1 148 0 3 1098 661 214 43 7 chr3 67249620 67249761 -92350022 - B3A SINE B2 -50 148 3 3 1098 427 239 63 0 chr3 67249917 67250059 -92349724 - L1MC3 LINE L1 -139 7646 7496 3 1098 578 192 224 18 chr3 67250065 67250288 -92349495 + MTC LTR MaLR 8 276 -145 3 1098 302 248 60 34 chr3 67250539 67250656 -92349127 - L1MC3 LINE L1 -510 7275 7156 3 1098 296 256 51 36 chr3 67250672 67250810 -92348973 - RMER15 LTR ERVL -15 560 421 3 1098 672 249 54 22 chr3 67251170 67251355 -92348428 - B3A SINE B2 0 198 8 3 1098 1468 75 0 11 chr3 67251694 67251884 -92347899 - B2_Mm2 SINE B2 -7 188 1 3 1098 258 234 90 60 chr3 67251895 67251995 -92347788 - Lx8 LINE L1 0 7473 7371 3 1098 590 168 73 126 chr3 67252016 67252207 -92347576 - B2_Mm2 SINE B2 -14 181 1 3 1098 288 300 20 10 chr3 67252276 67252377 -92347406 - Lx9 LINE L1 -1692 5952 5851 3 1098 330 319 9 0 chr3 67252892 67253008 -92346775 + RSINE1 SINE B4 9 125 -40 3 1098 1429 229 70 22 chr3 67255800 67256157 -92343626 - ORR1D1 LTR MaLR 0 374 1 3 1098 720 245 50 5 chr3 67256575 67256776 -92343007 + B3 SINE B2 2 211 -5 3 1098 1437 80 16 0 chr3 67257044 67257231 -92342552 + B2_Mm2 SINE B2 1 190 -5 3 1098 360 214 0 12 chr3 67258938 67259023 -92340760 - MLT1E2 LTR MaLR -10 617 534 3 1098 528 309 44 51 chr3 67259095 67259388 -92340395 - B4 SINE B4 0 292 2 3 1098 846 204 39 6 chr3 67259602 67259784 -92339999 - B3A SINE B2 -8 190 3 3 1098 320 186 57 23 chr3 67260702 67260790 -92338993 + ID_B1 SINE B4 83 173 -51 3 1098 513 281 71 12 chr3 67261081 67261250 -92338533 + B3A SINE B2 2 180 -18 3 1098 390 234 91 30 chr3 67261272 67261404 -92338379 + B1_Mus2 SINE Alu 2 141 -6 3 1098 198 0 0 0 chr3 67262580 67262602 -92337181 + (CAA)n Simple_repeat Simple_repeat 3 24 0 3 1098 192 27 26 51 chr3 67264171 67264210 -92335573 + (TA)n Simple_repeat Simple_repeat 2 39 0 3 1098 383 210 318 34 chr3 67268345 67268493 -92331290 - B3A SINE B2 -8 190 1 3 1098 297 0 0 0 chr3 67269066 67269099 -92330684 + (TG)n Simple_repeat Simple_repeat 2 34 0 3 1098 627 242 38 32 chr3 67269099 67269249 -92330534 - B3 SINE B2 -63 153 1 3 1098 609 176 0 32 chr3 67269470 67269593 -92330190 + PB1D9 SINE Alu 2 120 0 3 1098 25 75 0 0 chr3 67269593 67269646 -92330137 + AT_rich Low_complexity Low_complexity 1 53 0 3 1098 216 0 0 0 chr3 67269736 67269760 -92330023 + (CCTG)n Simple_repeat Simple_repeat 3 26 0 3 1098 462 245 102 0 chr3 67270444 67270591 -92329192 - RSINE1 SINE B4 0 165 4 3 1098 314 200 26 26 chr3 67272279 67272356 -92327427 - PB1D9 SINE Alu -1 119 43 3 1098 290 184 12 50 chr3 67272803 67272883 -92326900 + L1MA10 LINE L1 6255 6331 -3 3 1098 405 0 0 0 chr3 67274509 67274554 -92325229 + (ATTG)n Simple_repeat Simple_repeat 3 47 0 3 1098 1020 61 83 0 chr3 67274556 67274688 -92325095 - B1_Mus1 SINE Alu -4 144 2 3 1098 201 29 0 81 chr3 67274694 67274731 -92325052 + (TTAA)n Simple_repeat Simple_repeat 1 34 0 3 1098 230 164 113 16 chr3 67274748 67274810 -92324973 + LTR85a LTR Gypsy? 360 427 -275 3 1098 339 212 0 0 chr3 67274816 67274896 -92324887 + (TATG)n Simple_repeat Simple_repeat 1 80 0 3 1098 23 33 0 0 chr3 67274979 67275009 -92324774 + AT_rich Low_complexity Low_complexity 1 30 0 3 1098 459 0 0 0 chr3 67275377 67275428 -92324355 + (TG)n Simple_repeat Simple_repeat 2 52 0 3 1098 1554 145 71 17 chr3 67275657 67275951 -92323832 - ORR1B1 LTR MaLR -84 310 1 3 1098 371 226 155 37 chr3 67276172 67276333 -92323450 + MER2 DNA MER2_type 159 338 -7 3 1098 216 0 0 0 chr3 67276748 67276772 -92323011 + (T)n Simple_repeat Simple_repeat 1 24 0 3 1098 339 96 0 0 chr3 67276959 67277011 -92322772 + (TG)n Simple_repeat Simple_repeat 1 52 0 3 1098 240 111 0 0 chr3 67278083 67278128 -92321655 + (TCTG)n Simple_repeat Simple_repeat 2 46 0 3 1098 369 0 0 0 chr3 67278128 67278169 -92321614 + (CA)n Simple_repeat Simple_repeat 1 41 0 3 1098 25 65 0 0 chr3 67278965 67279011 -92320772 + AT_rich Low_complexity Low_complexity 1 46 0 3 1098 668 268 111 27 chr3 67279201 67279462 -92320321 - B4A SINE B4 -9 283 1 4 1098 373 318 0 57 chr3 67279673 67279692 -92320091 + ID_B1 SINE B4 77 208 -16 4 1098 603 231 16 33 chr3 67279692 67279813 -92319970 + B1_Mur1 SINE Alu 15 133 -16 4 1098 1988 159 62 3 chr3 67280884 67281238 -92318545 - ORR1C1 LTR MaLR 0 378 4 4 1098 324 333 131 0 chr3 67282200 67282368 -92317415 + Tigger5 DNA MER2_type 41 230 -2176 4 1098 351 283 29 39 chr3 67282369 67282472 -92317311 + Tigger5 DNA MER2_type 2291 2392 -14 4 1098 275 279 51 0 chr3 67284590 67284669 -92315114 + MER2 DNA MER2_type 97 179 -166 4 1098 537 291 37 0 chr3 67285181 67285315 -92314468 - ID_B1 SINE B4 -7 217 79 4 1098 22 0 0 0 chr3 67285826 67285848 -92313935 + AT_rich Low_complexity Low_complexity 1 22 0 4 1098 4161 158 67 51 chr3 67286167 67287015 -92312768 + RMER19B LTR ERVK 1 862 -40 4 1098 213 289 39 13 chr3 67287734 67287811 -92311972 + L2a LINE L2 1184 1262 -2157 4 1098 341 257 335 8 chr3 67288195 67288446 -92311337 + L2a LINE L2 2471 2803 -616 4 1098 401 287 91 61 chr3 67288725 67288955 -92310828 + L2a LINE L2 3189 3425 -1 4 1098 859 200 53 34 chr3 67290822 67291029 -92308754 + B3 SINE B2 2 212 -4 4 1098 319 272 65 37 chr3 67291133 67291240 -92308543 + RSINE1 SINE B4 28 137 -28 4 1098 209 185 15 0 chr3 67291272 67291337 -92308446 + A-rich Low_complexity Low_complexity 4 69 0 4 1098 318 284 141 36 chr3 67293030 67293220 -92306563 - B3A SINE B2 -11 205 1 4 1098 182 107 35 35 chr3 67293223 67293281 -92306502 + (TA)n Simple_repeat Simple_repeat 2 59 0 4 1098 575 260 109 38 chr3 67293442 67293626 -92306157 + B3A SINE B2 19 215 -1 4 1098 286 282 0 0 chr3 67295184 67295255 -92304528 + MTE2a LTR MaLR 6 76 -303 4 1098 472 211 318 22 chr3 67295281 67295460 -92304323 + MTE2a LTR MaLR 148 379 0 4 1098 182 177 29 114 chr3 67296522 67296592 -92303191 - L3b LINE CR1 -249 233 170 4 1098 1911 268 104 27 chr3 67297843 67298479 -92301304 + Lx8 LINE L1 6368 7052 -421 4 1098 375 23 0 0 chr3 67298479 67298523 -92301260 + (TG)n Simple_repeat Simple_repeat 1 44 0 4 1098 348 24 0 0 chr3 67298523 67298564 -92301219 + (GA)n Simple_repeat Simple_repeat 2 42 0 4 1098 1014 57 22 28 chr3 67298564 67298745 -92301038 + (GAGAA)n Simple_repeat Simple_repeat 1 180 0 4 1098 1064 172 23 0 chr3 67298749 67298923 -92300860 + B3 SINE B2 27 204 -12 4 1098 1047 259 39 39 chr3 67298971 67299276 -92300507 + Lx8 LINE L1 7167 7471 -2 4 1098 311 287 61 133 chr3 67299719 67299802 -92299981 + MT2B LTR ERVL 85 155 -446 4 1098 641 211 24 16 chr3 67299802 67299927 -92299856 + B1_Mus1 SINE Alu 2 127 -21 4 1098 983 239 5 18 chr3 67299942 67300159 -92299624 + B3 SINE B2 1 214 -2 4 1098 294 29 0 0 chr3 67300208 67300243 -92299540 + (TA)n Simple_repeat Simple_repeat 2 36 0 4 1098 235 389 77 49 chr3 67300715 67301064 -92298719 + ORR1E LTR MaLR 1 359 0 4 1098 225 0 0 0 chr3 67301760 67301785 -92297998 + (TG)n Simple_repeat Simple_repeat 1 25 0 4 1098 397 212 34 34 chr3 67301787 67301875 -92297908 - RSINE1 SINE B4 -39 126 39 4 1098 411 21 0 0 chr3 67301911 67301959 -92297824 + (CA)n Simple_repeat Simple_repeat 1 48 0 4 1098 198 266 62 0 chr3 67303462 67303526 -92296257 - L2b LINE L2 -238 3137 3070 4 1098 799 213 80 0 chr3 67303850 67304038 -92295745 + B3 SINE B2 1 203 -13 4 1098 699 217 121 75 chr3 67304200 67304374 -92295409 + B3A SINE B2 3 184 -11 4 1098 378 0 0 0 chr3 67305419 67305461 -92294322 + (TC)n Simple_repeat Simple_repeat 1 42 0 4 1098 1259 77 71 6 chr3 67305627 67305809 -92293974 + B2_Mm2 SINE B2 2 195 0 4 1098 222 233 0 0 chr3 67306833 67306893 -92292890 + (TCCA)n Simple_repeat Simple_repeat 4 63 0 4 1098 182 270 45 45 chr3 67306951 67307017 -92292766 - MIR SINE MIR -81 181 116 4 1098 1298 219 146 31 chr3 67307299 67307718 -92292065 - MLT1C LTR MaLR 0 467 1 4 1098 649 226 31 0 chr3 67307986 67308145 -92291638 - MER5A DNA MER1_type -19 170 7 4 1098 751 191 13 164 chr3 67308474 67308630 -92291153 - ORR1D1 LTR MaLR -30 344 213 4 1098 645 10 125 0 chr3 67308630 67308783 -92291000 + (CAGG)n Simple_repeat Simple_repeat 1 174 -185 4 1098 645 10 125 0 chr3 67308790 67308950 -92290833 + (CAGG)n Simple_repeat Simple_repeat 175 359 0 4 1098 751 191 13 164 chr3 67308950 67309023 -92290760 - ORR1D1 LTR MaLR -162 212 143 4 1098 1725 202 47 12 chr3 67309023 67309543 -92290240 - MERVL_2A-int LTR ERVL -5037 724 121 4 1098 3024 154 58 29 chr3 67309543 67310123 -92289660 + RLTR1D LTR ERV1 1 605 0 4 1098 259 150 0 0 chr3 67310123 67310163 -92289620 - MERVL_2A-int LTR ERVL -5655 106 67 4 1098 594 181 132 16 chr3 67310189 67310318 -92289465 + B1_Mur2 SINE Alu 1 144 -5 4 1098 1915 177 118 80 chr3 67310319 67310767 -92289016 - MT2A LTR ERVL -68 465 1 4 1098 466 277 54 0 chr3 67310767 67310897 -92288886 - MER44B DNA MER2_type -19 531 395 4 1098 516 207 74 0 chr3 67310904 67311025 -92288758 + Ricksha_c DNA MuDR 356 485 -1563 4 1098 338 302 177 22 chr3 67311293 67311543 -92288240 + MLT2B1 LTR ERVL 273 567 0 4 1098 1180 280 61 17 chr3 67311555 67311900 -92287883 - MER44B DNA MER2_type -169 381 22 4 1098 4280 40 2 0 chr3 67313311 67313817 -92285966 + L1Md_F2 LINE L1 6076 6582 0 4 1098 721 284 64 25 chr3 67314108 67314343 -92285440 + MLT1D LTR MaLR 255 498 -7 4 1098 1070 191 216 63 chr3 67315751 67316098 -92283685 - MTD LTR MaLR -14 405 6 4 1098 291 54 0 0 chr3 67316099 67316136 -92283647 + (CCA)n Simple_repeat Simple_repeat 1 37 0 4 1098 225 0 0 0 chr3 67316136 67316161 -92283622 + (CAA)n Simple_repeat Simple_repeat 3 27 0 4 1098 209 33 33 0 chr3 67317029 67317059 -92282724 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 4 1098 506 16 16 0 chr3 67317233 67317296 -92282487 + (CA)n Simple_repeat Simple_repeat 2 65 0 4 1098 180 0 0 0 chr3 67317296 67317316 -92282467 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 4 1098 654 264 61 0 chr3 67317838 67317986 -92281797 - RSINE1 SINE B4 -6 159 3 4 1098 231 36 0 0 chr3 67318071 67318099 -92281684 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 4 1098 578 267 53 0 chr3 67319998 67320148 -92279635 + RSINE1 SINE B4 2 159 -6 4 1098 186 26 50 50 chr3 67323656 67323696 -92276087 + (TTTG)n Simple_repeat Simple_repeat 3 42 0 4 1098 765 103 0 236 chr3 67323832 67323888 -92275895 + B1_Mus1 SINE Alu 2 41 -107 4 1098 1553 37 32 0 chr3 67323888 67324077 -92275706 + B2_Mm2 SINE B2 1 195 0 4 1098 765 103 0 236 chr3 67324077 67324211 -92275572 + B1_Mus1 SINE Alu 42 147 -1 4 1098 208 135 0 0 chr3 67324213 67324250 -92275533 + (CAAAA)n Simple_repeat Simple_repeat 3 39 0 4 1098 441 0 0 0 chr3 67324367 67324416 -92275367 + (TATG)n Simple_repeat Simple_repeat 4 52 0 4 1098 252 122 0 0 chr3 67324432 67324473 -92275310 + (CA)n Simple_repeat Simple_repeat 2 42 0 4 1098 241 286 0 0 chr3 67326125 67326181 -92273602 + B3A SINE B2 106 161 -37 4 1098 180 337 29 95 chr3 67326326 67326431 -92273352 - L2 LINE L2 -1837 1582 1485 4 1098 688 229 31 56 chr3 67326893 67327055 -92272728 + RSINE1 SINE B4 4 161 -4 4 1098 783 203 181 0 chr3 67327147 67327324 -92272459 - B3 SINE B2 -2 214 6 4 1098 374 311 39 0 chr3 67327332 67327435 -92272348 - U6 snRNA snRNA 0 107 1 4 1098 209 345 0 34 chr3 67328715 67328832 -92270951 + GA-rich Low_complexity Low_complexity 1 113 0 4 1098 305 266 142 87 chr3 67329016 67329234 -92270549 - RMER21B LTR ERV1 -277 565 336 4 1098 349 158 50 50 chr3 67329315 67329395 -92270388 - RMER4B LTR ERVK -135 450 371 4 1098 1330 210 24 24 chr3 67329395 67329688 -92270095 - RodERV21-int LTR ERV1 -162 4829 4537 4 1098 392 301 40 25 chr3 67329943 67330073 -92269710 - MER5A DNA MER1_type -50 139 9 4 1098 312 35 34 34 chr3 67330377 67330436 -92269347 + (TTTG)n Simple_repeat Simple_repeat 2 60 0 4 1098 746 50 16 4 chr3 67330436 67330536 -92269247 - B1_Mm SINE Alu -11 136 1 4 1098 1126 88 0 20 chr3 67330770 67330921 -92268862 + B1_Mus1 SINE Alu 1 148 0 4 1098 180 80 0 91 chr3 67330921 67330976 -92268807 + A-rich Low_complexity Low_complexity 5 54 0 4 1098 235 295 94 10 chr3 67331514 67331610 -92268173 - MIR SINE MIR -125 137 34 4 1098 234 91 0 0 chr3 67333360 67333393 -92266390 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 4 1098 224 122 24 0 chr3 67333856 67333897 -92265886 + (GA)n Simple_repeat Simple_repeat 2 43 0 4 1098 469 209 9 26 chr3 67333897 67334010 -92265773 - MT2A LTR ERVL -320 213 103 4 1098 899 215 149 177 chr3 67334361 67334482 -92265301 + MT2A LTR ERVL 1 117 -416 4 1098 1181 108 0 46 chr3 67334482 67334677 -92265106 - B2_Mm2 SINE B2 -9 186 1 4 1098 899 217 141 177 chr3 67334677 67335067 -92264716 + MT2A LTR ERVL 118 599 -2 4 1098 3794 166 34 32 chr3 67335071 67335350 -92264433 + MERVL_2A-int LTR ERVL 4 273 -5488 4 1098 1301 88 39 0 chr3 67335350 67335531 -92264252 + B2_Mm2 SINE B2 2 189 -6 4 1098 3794 166 34 32 chr3 67335531 67335992 -92263791 + MERVL_2A-int LTR ERVL 274 745 -5016 4 1098 12703 158 42 8 chr3 67335995 67338139 -92261644 + MERVL_2A-int LTR ERVL 847 3064 -2697 4 1098 2913 116 36 0 chr3 67338131 67338552 -92261231 + MERVL_2A-int LTR ERVL 3830 4265 -1496 4 1098 484 146 35 25 chr3 67338554 67338665 -92261118 - L1_Mm LINE L1 -438 5445 5304 4 1098 703 270 20 30 chr3 67338677 67338879 -92260904 - B3 SINE B2 -8 208 9 4 1098 638 270 131 29 chr3 67338886 67339130 -92260653 + MTE2a LTR MaLR 105 373 -6 4 1098 240 35 0 0 chr3 67339206 67339235 -92260548 + (T)n Simple_repeat Simple_repeat 1 29 0 4 1098 38682 29 0 0 chr3 67339237 67345658 -92254125 - L1Md_T LINE L1 0 6585 70 4 1098 28 48 0 0 chr3 67345805 67345847 -92253936 + AT_rich Low_complexity Low_complexity 1 42 0 4 1098 352 0 0 40 chr3 67345906 67345956 -92253827 + (TTTTA)n Simple_repeat Simple_repeat 3 50 0 4 1098 467 290 8 0 chr3 67345986 67346110 -92253673 - ID_B1 SINE B4 -2 222 98 4 1098 369 0 0 0 chr3 67347130 67347171 -92252612 + (TTTA)n Simple_repeat Simple_repeat 4 44 0 4 1098 714 188 6 55 chr3 67348121 67348284 -92251499 + ORR1A1 LTR MaLR 1 155 -191 4 1098 500 193 275 22 chr3 67348303 67348526 -92251257 - MT2A LTR ERVL -95 489 193 4 1098 2395 144 10 5 chr3 67348639 67349044 -92250739 - MTC LTR MaLR -14 407 1 4 1098 514 306 94 17 chr3 67349853 67350086 -92249697 + MLT1A0 LTR MaLR 97 347 -18 4 1098 180 0 0 0 chr3 67351725 67351745 -92248038 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 5 1098 1826 144 6 30 chr3 67352269 67352324 -92247459 - ORR1A4 LTR MaLR 0 329 274 5 1098 2508 67 29 3 chr3 67352324 67352669 -92247114 - L1_Mus3 LINE L1 0 6638 6285 5 1098 1826 144 6 30 chr3 67352669 67352950 -92246833 - ORR1A4 LTR MaLR -56 273 1 5 1098 387 0 0 0 chr3 67353592 67353635 -92246148 + (CA)n Simple_repeat Simple_repeat 2 44 0 5 1098 2336 179 58 45 chr3 67354527 67355042 -92244741 - RLTR28 LTR ERVL -2 522 1 5 1098 198 0 0 0 chr3 67355458 67355480 -92244303 + (CAA)n Simple_repeat Simple_repeat 2 23 0 5 1098 423 0 0 0 chr3 67355599 67355646 -92244137 + (CA)n Simple_repeat Simple_repeat 1 47 0 5 1098 501 17 0 0 chr3 67356159 67356217 -92243566 + (TC)n Simple_repeat Simple_repeat 1 58 0 5 1098 657 279 18 18 chr3 67356235 67356430 -92243353 - ID_B1 SINE B4 -10 214 26 5 1098 210 267 0 0 chr3 67357009 67357054 -92242729 + CT-rich Low_complexity Low_complexity 2 46 0 5 1098 278 139 0 0 chr3 67357403 67357446 -92242337 - RLTR42 LTR ERVK -193 46 4 5 1098 397 283 10 0 chr3 67358063 67358162 -92241621 + B4 SINE B4 83 182 -110 5 1098 2537 194 24 19 chr3 67358168 67358940 -92240843 + Lx7 LINE L1 5424 6203 -1493 5 1098 728 133 0 9 chr3 67359348 67359454 -92240329 + Lx7 LINE L1 6200 6304 -1392 5 1098 194 62 31 0 chr3 67359454 67359486 -92240297 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 5 1098 1119 95 0 0 chr3 67359494 67359642 -92240141 - B1_Mus1 SINE Alu 0 148 1 5 1098 5200 210 89 17 chr3 67359642 67360865 -92238918 + Lx7 LINE L1 6385 7695 -1 5 1098 330 26 0 0 chr3 67360956 67360995 -92238788 + (CA)n Simple_repeat Simple_repeat 1 39 0 5 1098 2118 275 67 47 chr3 67361728 67362522 -92237261 - Lx8 LINE L1 0 7473 6664 5 1098 404 255 137 65 chr3 67362809 67362977 -92236806 + B3A SINE B2 3 182 -16 5 1098 250 57 0 0 chr3 67363028 67363063 -92236720 + U2 snRNA snRNA 1 35 -153 5 1098 286 346 141 51 chr3 67363277 67363533 -92236250 - MLT1L LTR MaLR -128 482 204 5 1098 527 244 16 78 chr3 67364648 67364839 -92234944 - L1MD2 LINE L1 -345 6014 5836 5 1098 622 314 110 8 chr3 67365571 67365944 -92233839 - MER68 LTR ERVL -152 411 1 5 1098 342 0 0 0 chr3 67366049 67366087 -92233696 + (TG)n Simple_repeat Simple_repeat 2 39 0 5 1098 768 170 273 0 chr3 67366180 67366345 -92233438 - B3 SINE B2 -6 210 1 5 1098 1410 302 112 61 chr3 67366533 67367042 -92232741 + L1M4 LINE L1 3629 4189 -1957 5 1098 532 269 82 15 chr3 67367042 67367238 -92232545 + B3 SINE B2 2 210 -6 5 1098 1410 303 108 60 chr3 67367238 67368024 -92231759 + L1M4 LINE L1 4190 4989 -1154 5 1098 524 163 0 0 chr3 67368050 67368136 -92231647 + B1_Mur4 SINE Alu 33 118 -32 5 1098 219 277 123 0 chr3 67368184 67368249 -92231534 - RSINE1 SINE B4 -91 74 2 5 1098 419 273 0 0 chr3 67369009 67369097 -92230686 + B4 SINE B4 126 213 -79 5 1098 660 159 0 0 chr3 67369145 67369321 -92230462 + GA-rich Low_complexity Low_complexity 1 176 0 5 1098 612 111 0 69 chr3 67369323 67369439 -92230344 + B1_Mur4 SINE Alu 43 150 0 5 1098 444 19 0 0 chr3 67369473 67369526 -92230257 + (CA)n Simple_repeat Simple_repeat 2 54 0 5 1098 564 264 46 40 chr3 67369934 67370108 -92229675 - B3A SINE B2 -22 176 2 5 1098 216 320 51 0 chr3 67370293 67370371 -92229412 - B4A SINE B4 -209 83 2 5 137 1038 297 71 19 chr3 67370371 67371014 -92228769 - L1M2 LINE L1 -713 5449 4764 5 1099 186 43 0 0 chr3 67371517 67371540 -92228243 + (CCGAA)n Simple_repeat Simple_repeat 3 25 0 5 1099 452 221 54 16 chr3 67371705 67371832 -92227951 - MTEb LTR MaLR -14 356 223 5 1099 21 57 0 0 chr3 67371991 67372026 -92227757 + AT_rich Low_complexity Low_complexity 1 35 0 5 1099 315 244 24 0 chr3 67372361 67372443 -92227340 - LTR41 LTR ERVL -594 174 91 5 1099 470 283 31 8 chr3 67372671 67372799 -92226984 + RSINE1 SINE B4 2 132 -33 5 1099 45 19 0 0 chr3 67373088 67373140 -92226643 + AT_rich Low_complexity Low_complexity 1 52 0 5 1099 577 272 60 34 chr3 67373198 67373533 -92226250 + MTEb LTR MaLR 12 378 -1 5 1099 883 203 35 25 chr3 67373659 67373856 -92225927 - B3 SINE B2 -15 201 3 5 1099 232 241 19 0 chr3 67374134 67374188 -92225595 + G-rich Low_complexity Low_complexity 5 59 0 5 1099 771 276 70 41 chr3 67374254 67374536 -92225247 - L1_Rod LINE L1 -476 5857 5506 5 1099 1463 270 64 19 chr3 67374550 67375039 -92224744 - RMER1A Other Other -375 691 15 5 1099 3094 72 157 4 chr3 67375436 67376135 -92223648 - RLTR13D1 LTR ERVK 0 806 1 5 1099 1468 230 58 112 chr3 67376169 67376727 -92223056 - RMER1B Other Other -551 515 16 5 1099 630 87 0 0 chr3 67377245 67377348 -92222435 + (CAGAGA)n Simple_repeat Simple_repeat 4 106 0 5 1099 614 279 121 60 chr3 67377349 67377862 -92221921 - L1M2 LINE L1 -474 6108 5599 5 1099 329 286 13 0 chr3 67377870 67377947 -92221836 - ID4_ SINE ID -4 79 2 5 1099 764 88 0 9 chr3 67377998 67378113 -92221670 + (GGA)n Simple_repeat Simple_repeat 3 116 0 5 1099 306 379 80 6 chr3 67378216 67378391 -92221392 - B4A SINE B4 -104 188 1 5 1099 302 240 16 40 chr3 67378424 67378565 -92221218 - L1M2 LINE L1 -4184 2365 2223 5 1099 265 294 89 94 chr3 67378540 67378946 -92220837 - L1M2 LINE L1 -4453 2096 1663 5 1099 2462 124 90 0 chr3 67379376 67379778 -92220005 - BGLII_B LTR ERVK 0 441 4 5 1099 930 141 0 26 chr3 67381115 67381268 -92218515 + B1_Mur3 SINE Alu 1 149 0 5 1099 2023 116 51 6 chr3 67381543 67381856 -92217927 - ORR1A2 LTR MaLR 0 327 1 5 1099 25 31 0 0 chr3 67381889 67381921 -92217862 + AT_rich Low_complexity Low_complexity 1 32 0 5 1099 6639 91 27 2 chr3 67381925 67382851 -92216932 - Lx2 LINE L1 -2 6995 6047 5 1099 248 53 26 0 chr3 67383042 67383080 -92216703 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 5 1099 1687 175 56 15 chr3 67383108 67383541 -92216242 - Lx2B LINE L1 0 7000 6501 5 1099 27 0 0 0 chr3 67384674 67384701 -92215082 + AT_rich Low_complexity Low_complexity 1 27 0 5 1099 254 29 0 28 chr3 67385061 67385097 -92214686 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 5 1099 2656 126 57 15 chr3 67385174 67385578 -92214205 - MTC LTR MaLR 0 421 1 5 1099 411 175 101 20 chr3 67387564 67387663 -92212120 + PB1D9 SINE Alu 1 107 -13 5 1099 198 0 0 0 chr3 67387663 67387685 -92212098 + (CCAA)n Simple_repeat Simple_repeat 1 22 0 5 1099 407 243 167 1 chr3 67390763 67390913 -92208870 - B3A SINE B2 -44 172 1 5 1099 524 279 173 12 chr3 67391423 67391677 -92208106 - MTE2a LTR MaLR 0 379 85 5 1099 346 339 108 11 chr3 67393509 67393694 -92206089 - MLT1G LTR MaLR -348 243 41 5 1099 621 124 0 0 chr3 67394343 67394440 -92205343 + (TCCA)n Simple_repeat Simple_repeat 4 100 0 5 1099 621 182 79 0 chr3 67394511 67394637 -92205146 - B1_Mur1 SINE Alu -5 144 9 5 1099 768 214 113 73 chr3 67395806 67396051 -92203732 - ORR1D1 LTR MaLR 0 374 120 5 1099 838 229 35 58 chr3 67396051 67396311 -92203472 - MT2B LTR ERVL 0 601 348 5 1099 185 342 44 18 chr3 67396999 67397112 -92202671 + MIRb SINE MIR 3 118 -150 5 1099 435 304 35 58 chr3 67397797 67397968 -92201815 - B4A SINE B4 -10 282 116 5 1099 1136 55 7 0 chr3 67398983 67399129 -92200654 - B1_Mus2 SINE Alu 0 147 1 5 1099 3641 41 2 24 chr3 67399361 67399813 -92199970 + L1Md_F2 LINE L1 6141 6582 0 5 1099 21 57 0 0 chr3 67400751 67400786 -92198997 + AT_rich Low_complexity Low_complexity 1 35 0 5 1099 393 224 0 84 chr3 67402434 67402541 -92197242 - MT2B LTR ERVL -4 580 483 5 1099 1269 120 289 4 chr3 67402543 67402823 -92196960 - ORR1B2 LTR MaLR -7 360 1 5 1099 758 234 124 52 chr3 67402823 67403169 -92196614 - MT2B LTR ERVL -98 503 7 5 1099 450 269 41 28 chr3 67403177 67403322 -92196461 - MTEa LTR MaLR -206 173 27 5 1099 229 196 74 56 chr3 67403580 67403634 -92196149 + MT2B2 LTR ERVL 233 287 -297 5 1099 394 283 62 8 chr3 67403591 67403605 -92196178 + B4 SINE B4 70 90 -202 5 1099 709 179 0 0 chr3 67403605 67403728 -92196055 + B1_Mur1 SINE Alu 2 124 -25 5 1099 21 82 0 0 chr3 67404788 67404837 -92194946 + AT_rich Low_complexity Low_complexity 1 49 0 5 1099 576 271 198 16 chr3 67405677 67405996 -92193787 - MTD LTR MaLR -22 399 16 5 1099 677 203 16 0 chr3 67407395 67407523 -92192260 + B3A SINE B2 2 131 -67 5 1099 289 230 27 0 chr3 67408017 67408091 -92191692 + L2a LINE L2 3304 3379 -47 5 1099 2119 131 16 85 chr3 67408207 67408656 -92191127 - ETnERV2-int LTR ERVK -4831 2575 2064 5 1099 213 39 0 0 chr3 67408656 67408682 -92191101 + (CCCCCT)n Simple_repeat Simple_repeat 5 30 0 5 1099 4723 138 29 14 chr3 67408682 67409455 -92190328 - ETnERV2-int LTR ERVK -6336 1070 284 5 1099 1286 49 0 5 chr3 67409455 67409660 -92190123 + (TTTC)n Simple_repeat Simple_repeat 1 203 0 5 1099 1453 199 57 7 chr3 67411777 67412056 -92187727 - ETnERV2-int LTR ERVK -7113 293 1 5 1099 3568 96 6 15 chr3 67412071 67412608 -92187175 - RLTR13C2 LTR ERVK 0 808 277 5 1099 3610 123 14 31 chr3 67412610 67413162 -92186621 + RLTR5_Mm LTR ERV1 1 542 -86 5 1099 4710 46 15 7 chr3 67413162 67413751 -92186032 + L1Md_F3 LINE L1 5991 6584 0 5 1099 3610 123 14 31 chr3 67413751 67413837 -92185946 + RLTR5_Mm LTR ERV1 543 628 0 5 1099 1641 105 39 53 chr3 67413837 67414119 -92185664 - RLTR13C2 LTR ERVK -530 278 1 5 1099 423 264 0 0 chr3 67414604 67414710 -92185073 - RMER15 LTR ERVL -16 559 454 5 1099 283 192 13 13 chr3 67414710 67414789 -92184994 + CT-rich Low_complexity Low_complexity 2 80 0 5 1099 335 276 229 0 chr3 67414797 67414902 -92184881 - B1_Mur1 SINE Alu -16 133 5 5 1099 378 0 0 0 chr3 67414979 67415021 -92184762 + (CA)n Simple_repeat Simple_repeat 2 43 0 5 1099 747 236 114 13 chr3 67415030 67415266 -92184517 + Lx7 LINE L1 7138 7397 -299 5 1099 1056 235 31 15 chr3 67416281 67416540 -92183243 - MTD LTR MaLR -156 263 1 5 1099 197 65 0 31 chr3 67416599 67416631 -92183152 + (TTTA)n Simple_repeat Simple_repeat 3 33 0 5 1099 444 196 101 2 chr3 67416631 67416740 -92183043 - B1_Mur1 SINE Alu -12 137 19 5 1099 375 41 0 0 chr3 67416755 67416804 -92182979 + (GAAAA)n Simple_repeat Simple_repeat 2 50 0 6 1099 453 270 91 80 chr3 67418749 67419035 -92180748 + ORR1E LTR MaLR 2 290 -69 6 1099 744 199 32 32 chr3 67419056 67419212 -92180571 - RMER1C Other Other -2 1340 1185 6 1099 761 268 72 0 chr3 67419312 67419506 -92180277 + ID_B1 SINE B4 8 215 -9 6 1099 216 0 0 0 chr3 67419509 67419533 -92180250 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 6 1099 644 166 7 0 chr3 67419534 67419673 -92180110 + GA-rich Low_complexity Low_complexity 3 142 0 6 1099 290 49 0 0 chr3 67420836 67420877 -92178906 + B1_Mm SINE Alu 99 139 -8 6 1099 654 149 0 0 chr3 67422016 67422150 -92177633 + (GA)n Simple_repeat Simple_repeat 1 134 0 6 1099 440 301 50 30 chr3 67422197 67422399 -92177384 + MamRep434 DNA TcMar 197 402 -24 6 1099 189 0 0 0 chr3 67422537 67422558 -92177225 + (TG)n Simple_repeat Simple_repeat 2 22 0 6 1099 36 82 0 0 chr3 67422595 67422680 -92177103 + AT_rich Low_complexity Low_complexity 1 85 0 6 1099 207 227 61 0 chr3 67423059 67423125 -92176658 + MIR SINE MIR 113 182 -80 6 1099 966 281 25 25 chr3 67425796 67426080 -92173703 + B4 SINE B4 9 292 0 6 1099 373 262 12 0 chr3 67426080 67426244 -92173539 + (CA)n Simple_repeat Simple_repeat 1 166 0 6 1099 722 160 7 0 chr3 67426288 67426438 -92173345 + (CA)n Simple_repeat Simple_repeat 2 152 0 6 1099 892 291 75 12 chr3 67426784 67427168 -92172615 + MLT2B3 LTR ERVL 1 407 -108 6 1099 210 245 20 0 chr3 67427982 67428031 -92171752 + PB1D10 SINE Alu 33 82 -35 6 1099 1172 68 0 7 chr3 67428412 67428560 -92171223 - B1_Mm SINE Alu 0 147 1 6 1099 198 308 15 0 chr3 67428977 67429042 -92170741 - MIRc SINE MIR -86 182 117 6 1099 1274 276 69 2 chr3 67429283 67429687 -92170096 + MER44B DNA MER2_type 1 431 -119 6 1099 3907 92 51 0 chr3 67429687 67430233 -92169550 - Lx2 LINE L1 -754 6243 5670 6 1099 5108 96 28 25 chr3 67430233 67430985 -92168798 + Lx2 LINE L1 6244 6997 0 6 1099 389 279 38 30 chr3 67430985 67431118 -92168665 + MER44B DNA MER2_type 417 550 0 6 1099 621 0 0 0 chr3 67431586 67431655 -92168128 + (CCA)n Simple_repeat Simple_repeat 3 71 0 6 1099 24 32 0 0 chr3 67432670 67432701 -92167082 + AT_rich Low_complexity Low_complexity 1 31 0 6 1099 188 0 0 69 chr3 67432809 67432838 -92166945 + (TTAA)n Simple_repeat Simple_repeat 3 29 0 6 1099 5943 168 64 16 chr3 67432857 67433954 -92165829 - Lx5 LINE L1 -47 7003 5855 6 1099 260 231 19 0 chr3 67434423 67434475 -92165308 - RMER30 DNA MER1_type -1 201 149 6 1099 536 284 7 26 chr3 67435659 67435811 -92163972 + B1_Mur1 SINE Alu 1 149 0 6 1099 441 54 0 0 chr3 67436264 67436320 -92163463 + (TG)n Simple_repeat Simple_repeat 1 56 0 6 1099 194 257 13 79 chr3 67436353 67436429 -92163354 - MIRc SINE MIR -122 146 76 6 1099 286 181 28 19 chr3 67437439 67437546 -92162237 + (TG)n Simple_repeat Simple_repeat 1 108 0 6 1099 1225 183 9 88 chr3 67437825 67438033 -92161750 + L1_Mur3 LINE L1 872 1068 -6644 6 1099 1277 20 0 0 chr3 67438033 67438179 -92161604 - B1_Mm SINE Alu 0 147 2 6 1099 1225 183 9 88 chr3 67438179 67438299 -92161484 + L1_Mur3 LINE L1 1069 1174 -6538 6 1099 3682 119 28 0 chr3 67438298 67438862 -92160921 + L1Md_F LINE L1 438 1047 -5494 6 1099 783 83 0 0 chr3 67438952 67439060 -92160723 + (TC)n Simple_repeat Simple_repeat 1 108 0 6 1099 379 294 117 43 chr3 67439071 67439259 -92160524 - Lx8 LINE L1 -182 7291 7090 6 1099 303 308 37 37 chr3 67439838 67439973 -92159810 + L2b LINE L2 2998 3132 -243 6 1099 694 208 67 62 chr3 67440221 67440416 -92159367 - RMER30 DNA MER1_type -6 196 1 6 1099 353 260 0 0 chr3 67440552 67440625 -92159158 + ID4_ SINE ID 2 74 -9 6 1099 595 66 0 21 chr3 67441182 67441248 -92158535 + (TTC)n Simple_repeat Simple_repeat 3 66 0 6 1099 1416 45 0 0 chr3 67441248 67441424 -92158359 + (TCTCCC)n Simple_repeat Simple_repeat 5 180 0 6 1099 595 66 0 21 chr3 67441424 67441450 -92158333 + (TTC)n Simple_repeat Simple_repeat 1 26 0 6 1099 24935 66 7 8 chr3 67441472 67446038 -92153745 - L1Md_F2 LINE L1 -5 6577 2014 6 1099 838 319 9 9 chr3 67446038 67446256 -92153527 - B4A SINE B4 -66 226 9 6 1099 267 315 41 0 chr3 67446265 67446338 -92153445 - B1F2 SINE Alu -26 123 48 6 1099 195 182 182 0 chr3 67446566 67446621 -92153162 + MIRm SINE MIR 83 147 -129 6 1099 234 291 0 0 chr3 67447543 67447598 -92152185 + L1M5 LINE L1 5660 5714 -526 6 1099 21 36 0 0 chr3 67447598 67447626 -92152157 + AT_rich Low_complexity Low_complexity 1 28 0 6 1099 333 0 0 0 chr3 67447688 67447725 -92152058 + (TTTA)n Simple_repeat Simple_repeat 4 40 0 6 1099 929 99 0 0 chr3 67447764 67447895 -92151888 - L1_Mus1 LINE L1 0 6567 6437 6 1099 516 297 16 16 chr3 67447993 67448178 -92151605 + Lx8 LINE L1 6896 7080 -393 6 1099 432 0 0 0 chr3 67450119 67450167 -92149616 + (TC)n Simple_repeat Simple_repeat 1 48 0 6 1099 255 245 39 58 chr3 67450677 67450833 -92148950 + (TATATG)n Simple_repeat Simple_repeat 4 156 0 6 1099 539 294 27 27 chr3 67450948 67451095 -92148688 - ID_B1 SINE B4 -14 210 64 6 1099 296 264 32 161 chr3 67451083 67451199 -92148584 + MARNA DNA Mariner 141 238 -348 6 1099 840 228 130 0 chr3 67451199 67451383 -92148400 - B3 SINE B2 -8 208 1 6 1099 296 264 32 161 chr3 67451383 67451483 -92148300 + MARNA DNA Mariner 239 329 -257 6 1099 216 67 0 0 chr3 67451728 67451758 -92148025 + (CAAG)n Simple_repeat Simple_repeat 2 31 0 6 1099 22 56 0 0 chr3 67451780 67451816 -92147967 + AT_rich Low_complexity Low_complexity 1 36 0 6 1099 219 267 0 0 chr3 67451943 67451988 -92147795 + ID4 SINE ID 5 49 -34 6 1099 27 29 0 0 chr3 67452928 67452962 -92146821 + AT_rich Low_complexity Low_complexity 1 34 0 6 1099 8971 88 35 30 chr3 67453111 67454579 -92145204 - Lx3B LINE L1 -2 6971 5504 6 1099 3805 74 31 52 chr3 67454577 67455158 -92144625 + Lx3B LINE L1 4956 5524 -362 6 1099 457 276 0 33 chr3 67455700 67455820 -92143963 - PB1D7 SINE Alu -1 119 4 6 1099 874 269 11 0 chr3 67456816 67456991 -92142792 - B3A SINE B2 -16 182 6 6 1099 1331 224 65 9 chr3 67457150 67457488 -92142295 - Lx9 LINE L1 -140 7504 7148 6 1099 3630 28 5 0 chr3 67457679 67458073 -92141710 - MTA_Mm LTR MaLR 0 396 1 6 1099 265 286 89 53 chr3 67458151 67458376 -92141407 - L1MA5 LINE L1 -12 6288 6056 6 1099 932 197 88 34 chr3 67458610 67458815 -92140968 - B3 SINE B2 0 216 1 6 1099 198 237 65 93 chr3 67459860 67459967 -92139816 - MIR SINE MIR 0 262 159 6 1099 23 0 0 0 chr3 67461017 67461040 -92138743 + AT_rich Low_complexity Low_complexity 1 23 0 6 1099 270 0 0 0 chr3 67461924 67461954 -92137829 + (TTCA)n Simple_repeat Simple_repeat 4 33 0 6 1099 1271 62 0 0 chr3 67462249 67462395 -92137388 - B1_Mus2 SINE Alu 0 147 2 6 1099 4197 188 49 8 chr3 67464255 67465007 -92134776 - Lx5 LINE L1 0 7050 6268 6 1099 261 0 0 0 chr3 67465074 67465103 -92134680 + (TG)n Simple_repeat Simple_repeat 1 29 0 6 1099 216 97 0 0 chr3 67465103 67465133 -92134650 + (CG)n Simple_repeat Simple_repeat 1 31 0 6 1099 894 274 0 5 chr3 67465575 67465766 -92134017 - B3 SINE B2 -11 205 16 6 1099 546 218 271 6 chr3 67465821 67465987 -92133796 + B3 SINE B2 3 212 -4 6 1099 416 213 55 47 chr3 67466857 67466985 -92132798 - L1MA6 LINE L1 -28 6272 6144 6 1099 1486 227 50 0 chr3 67467167 67467484 -92132299 - Tigger7 DNA MER2_type -1890 601 269 6 1099 796 270 121 48 chr3 67467574 67467822 -92131961 + B4A SINE B4 1 277 -15 6 1099 736 87 8 8 chr3 67467822 67467950 -92131833 + (CA)n Simple_repeat Simple_repeat 1 128 0 6 1099 195 69 0 0 chr3 67467956 67467985 -92131798 + (TCTCTG)n Simple_repeat Simple_repeat 4 32 0 6 1099 796 270 121 48 chr3 67467985 67468001 -92131782 + B4A SINE B4 278 292 0 6 1099 1128 282 31 120 chr3 67468613 67469004 -92130779 - MTE2a LTR MaLR -5 374 19 6 1099 1383 229 143 22 chr3 67469068 67469425 -92130358 - MTD LTR MaLR 0 419 20 6 1099 214 395 9 18 chr3 67469546 67469657 -92130126 - PB1D10 SINE Alu 0 117 8 6 1099 351 0 0 0 chr3 67469672 67469711 -92130072 + (CA)n Simple_repeat Simple_repeat 2 40 0 6 1099 360 0 0 0 chr3 67470018 67470058 -92129725 + (TC)n Simple_repeat Simple_repeat 2 41 0 6 1099 595 292 0 34 chr3 67470203 67470380 -92129403 - B4A SINE B4 -42 250 80 6 1099 633 300 71 88 chr3 67470887 67471183 -92128600 - B4A SINE B4 0 292 2 6 1099 390 42 0 0 chr3 67471309 67471357 -92128426 + (CATA)n Simple_repeat Simple_repeat 4 51 0 6 1099 328 347 87 54 chr3 67471423 67471847 -92127936 - ERVL-E-int LTR ERVL -365 5302 4865 6 1099 1595 172 78 7 chr3 67471986 67472279 -92127504 - MTC LTR MaLR -105 316 3 6 1099 4889 130 97 3 chr3 67472293 67473143 -92126640 - RMER17B LTR ERVK -3 955 27 6 1099 551 351 51 54 chr3 67474390 67474706 -92125077 - ERVL-B4-int LTR ERVL -3553 2161 1847 6 1099 618 131 0 0 chr3 67474790 67474889 -92124894 + (TTTC)n Simple_repeat Simple_repeat 2 100 0 6 1099 997 266 11 53 chr3 67475278 67475560 -92124223 + MTD LTR MaLR 1 270 -149 6 1099 626 229 28 7 chr3 67475612 67475753 -92124030 + MTD LTR MaLR 262 405 -14 6 1099 21 57 0 0 chr3 67476219 67476254 -92123529 + AT_rich Low_complexity Low_complexity 1 35 0 6 1099 21 0 0 0 chr3 67476303 67476324 -92123459 + AT_rich Low_complexity Low_complexity 1 21 0 6 1099 413 267 25 17 chr3 67476537 67476655 -92123128 - PB1D9 SINE Alu 0 120 2 6 1099 616 206 0 0 chr3 67476657 67476759 -92123024 + B3A SINE B2 13 114 -84 6 1099 3527 289 63 20 chr3 67476772 67477857 -92121926 - Lx8 LINE L1 -121 7352 6222 6 1099 387 0 0 0 chr3 67478343 67478386 -92121397 + (CA)n Simple_repeat Simple_repeat 2 44 0 6 1099 392 357 71 6 chr3 67478819 67479002 -92120781 + L3 LINE CR1 3507 3701 -788 6 1099 230 389 69 53 chr3 67479470 67479752 -92120031 + L3 LINE CR1 3999 4295 -194 6 1099 899 208 190 98 chr3 67479752 67480099 -92119684 + MTE2a LTR MaLR 1 379 0 6 1099 230 389 69 53 chr3 67480099 67480250 -92119533 + L3 LINE CR1 4296 4439 -50 6 1099 838 238 42 118 chr3 67480263 67480501 -92119282 - ORR1C2 LTR MaLR -4 380 149 7 1099 404 147 13 0 chr3 67480501 67480576 -92119207 + GA-rich Low_complexity Low_complexity 1 76 0 7 1099 814 184 9 148 chr3 67480576 67480786 -92118997 - ORR1C2 LTR MaLR -193 181 1 7 1099 563 272 96 16 chr3 67481054 67481241 -92118542 - MLT1K LTR MaLR -2 593 392 7 1099 371 309 50 0 chr3 67481613 67481752 -92118031 - ORR1E LTR MaLR -213 146 1 7 1099 3772 121 0 0 chr3 67482883 67483429 -92116354 + L1_Mm LINE L1 4759 5304 -579 7 1099 34532 66 5 12 chr3 67483425 67488539 -92111244 + L1Md_F2 LINE L1 510 5586 -297 7 1099 8447 51 4 0 chr3 67488540 67489519 -92110264 + L1Md_F2 LINE L1 5588 6570 -12 7 1099 3972 68 2 0 chr3 67489519 67490020 -92109763 + L1_Mm LINE L1 5292 5793 -90 7 1099 4944 7 0 0 chr3 67490024 67490571 -92109212 + L1Md_A LINE L1 5040 5586 -297 7 1099 9212 20 2 0 chr3 67490571 67491565 -92108218 + L1Md_A LINE L1 5587 6582 0 7 1099 6519 68 5 0 chr3 67491560 67492339 -92107444 + L1_Mus1 LINE L1 5783 6565 -2 7 1099 21 57 0 0 chr3 67493089 67493124 -92106659 + AT_rich Low_complexity Low_complexity 1 35 0 7 1099 522 46 0 0 chr3 67493214 67493279 -92106504 + (CA)n Simple_repeat Simple_repeat 2 66 0 7 1099 1092 57 0 0 chr3 67493290 67493430 -92106353 + (GA)n Simple_repeat Simple_repeat 2 141 0 7 1099 2309 204 55 65 chr3 67494474 67495056 -92104727 - RMER1C Other Other -8 1334 576 7 1099 279 0 0 0 chr3 67495096 67495127 -92104656 + (TTA)n Simple_repeat Simple_repeat 2 32 0 7 1099 5830 99 14 22 chr3 67495131 67495937 -92103846 - Lx3B LINE L1 -5 6968 6170 7 1099 2467 259 35 68 chr3 67495942 67496102 -92103681 - L1_Rod LINE L1 -485 5362 5212 7 1099 3497 59 0 0 chr3 67496102 67496509 -92103274 + L1Md_F2 LINE L1 6164 6570 -12 7 1099 2467 259 35 68 chr3 67496509 67497372 -92102411 - L1_Rod LINE L1 -636 5211 4373 7 1099 906 233 63 0 chr3 67497372 67497561 -92102222 - ID_B1 SINE B4 -2 222 22 7 1099 2245 248 29 19 chr3 67497580 67498205 -92101578 - Lx6 LINE L1 0 7460 6449 7 1099 1127 70 13 0 chr3 67498205 67498362 -92101421 + (TTTC)n Simple_repeat Simple_repeat 2 160 0 7 1099 2206 267 37 35 chr3 67498362 67499153 -92100630 - Lx6 LINE L1 -586 6472 5697 7 1099 421 239 22 0 chr3 67499162 67499254 -92100529 - B1F SINE Alu -6 143 50 7 1099 1337 220 11 21 chr3 67499254 67499611 -92100172 - Lx2B LINE L1 -84 6974 6530 7 1099 279 0 0 0 chr3 67499630 67499661 -92100122 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 7 1099 2129 167 72 168 chr3 67500297 67500546 -92099237 + RLTR12B LTR ERVK 1 244 -284 1 1099 1131 112 0 0 chr3 67500546 67500725 -92099058 + (GGGA)n Simple_repeat Simple_repeat 2 180 0 2 1099 2129 167 72 168 chr3 67500725 67501057 -92098726 + RLTR12B LTR ERVK 245 526 -2 1 1099 722 269 98 45 chr3 67501330 67501628 -92098155 - Lx8 LINE L1 0 7473 7157 3 1099 1856 198 21 47 chr3 67501628 67502009 -92097774 - ORR1D1 LTR MaLR 0 374 4 4 1099 722 269 98 45 chr3 67502009 67502045 -92097738 - Lx8 LINE L1 -317 7156 7121 3 1100 189 74 0 0 chr3 67502400 67502427 -92097356 + (TGAA)n Simple_repeat Simple_repeat 4 30 0 5 1100 1082 277 48 69 chr3 67502593 67502995 -92096788 + MTE2a LTR MaLR 20 419 0 6 1100 486 289 92 26 chr3 67502995 67503177 -92096606 + MLT1I LTR MaLR 99 293 -118 7 1100 934 207 90 10 chr3 67504789 67504989 -92094794 + B3 SINE B2 1 216 0 8 1100 700 289 71 15 chr3 67505474 67505671 -92094112 - B3 SINE B2 -5 211 4 9 1100 1280 34 0 13 chr3 67506135 67506284 -92093499 - B1_Mm SINE Alu 0 147 1 1 1100 281 89 0 22 chr3 67506379 67506415 -92093368 + (TC)n Simple_repeat Simple_repeat 1 36 0 1 1100 1321 50 0 22 chr3 67506415 67506599 -92093184 + (TCTCCC)n Simple_repeat Simple_repeat 1 180 0 1 1100 281 89 0 22 chr3 67506599 67506608 -92093175 + (TC)n Simple_repeat Simple_repeat 2 10 0 1 1100 612 279 165 26 chr3 67506613 67506934 -92092849 - L1MA5A LINE L1 -362 5935 5501 1 1100 447 19 0 0 chr3 67507138 67507190 -92092593 + (TG)n Simple_repeat Simple_repeat 2 53 0 1 1100 503 299 10 144 chr3 67507238 67507433 -92092350 - B4A SINE B4 -123 169 1 1 1100 310 290 20 0 chr3 67507572 67507672 -92092111 - L1MC LINE L1 -2435 5447 5346 1 1100 28 0 0 0 chr3 67507720 67507748 -92092035 + AT_rich Low_complexity Low_complexity 1 28 0 1 1100 844 172 37 15 chr3 67507785 67507921 -92091862 - B1_Mur4 SINE Alu -8 142 4 1 1100 3098 205 57 41 chr3 67507930 67508365 -92091418 - RMER1C Other Other -3 1339 918 2 1100 1383 126 9 4 chr3 67508365 67508597 -92091186 - L1_Mus4 LINE L1 -6 6630 6398 2 1100 3098 208 55 39 chr3 67508597 67508910 -92090873 - RMER1C Other Other -425 917 595 2 1100 37 23 0 0 chr3 67509363 67509407 -92090376 + AT_rich Low_complexity Low_complexity 1 44 0 2 1100 3845 51 11 2 chr3 67509450 67509901 -92089882 - L1Md_F2 LINE L1 -3 6579 6125 2 1100 272 324 58 19 chr3 67510190 67510294 -92089489 + PB1D10 SINE Alu 1 108 -9 2 1100 343 36 54 0 chr3 67510504 67510560 -92089223 + (TTTTTG)n Simple_repeat Simple_repeat 2 60 0 2 1100 1553 237 118 19 chr3 67510677 67510997 -92088786 - RMER5 LTR ERV1 -4 530 187 2 1100 357 24 0 0 chr3 67510997 67511039 -92088744 + (TTTA)n Simple_repeat Simple_repeat 1 42 0 2 1100 1553 237 118 19 chr3 67511039 67511200 -92088583 - RMER5 LTR ERV1 -348 186 1 2 1100 375 288 12 0 chr3 67511205 67511285 -92088498 - B1_Mur2 SINE Alu -49 100 20 2 1100 366 23 0 0 chr3 67511454 67511497 -92088286 + (CA)n Simple_repeat Simple_repeat 2 44 0 2 1100 471 90 0 0 chr3 67511497 67511575 -92088208 + (GA)n Simple_repeat Simple_repeat 1 78 0 3 1100 1119 89 0 0 chr3 67511576 67511733 -92088050 + (GAA)n Simple_repeat Simple_repeat 3 159 0 3 1100 661 234 86 25 chr3 67512391 67512553 -92087230 - ID_B1 SINE B4 -2 222 51 3 1100 625 351 104 15 chr3 67512680 67513015 -92086768 - MTE-int LTR MaLR -127 1453 1089 3 1100 570 68 0 0 chr3 67514717 67514790 -92084993 + RMER17A LTR ERVK 1 73 -678 3 1100 2432 74 52 27 chr3 67514786 67515189 -92084594 - RMER17A LTR ERVK -261 490 78 3 1100 416 218 186 39 chr3 67517407 67517536 -92082247 - B3 SINE B2 -30 186 39 3 1100 629 326 33 95 chr3 67517564 67517869 -92081914 + MTE2a LTR MaLR 14 299 -80 3 1100 435 255 18 36 chr3 67517856 67517966 -92081817 - B1_Mur2 SINE Alu -33 116 9 3 1100 501 229 25 29 chr3 67517889 67518061 -92081722 + MTE2a LTR MaLR 214 379 0 3 1100 2150 163 3 3 chr3 67518097 67518442 -92081341 - ORR1A1 LTR MaLR 0 346 2 4 1100 314 247 44 22 chr3 67518585 67518676 -92081107 - MLT1A1 LTR MaLR 0 408 316 4 1100 342 0 0 0 chr3 67520588 67520626 -92079157 + (TC)n Simple_repeat Simple_repeat 2 39 0 4 1100 452 156 11 0 chr3 67521070 67521160 -92078623 + CT-rich Low_complexity Low_complexity 1 91 0 4 1100 269 305 99 22 chr3 67521161 67521342 -92078441 - MLT1A1 LTR MaLR -164 303 109 4 1100 717 110 0 0 chr3 67521347 67521456 -92078327 + (TTTC)n Simple_repeat Simple_repeat 4 112 0 4 1100 788 114 17 9 chr3 67521456 67521571 -92078212 - B2_Mm2 SINE B2 -79 116 1 4 1100 291 324 0 0 chr3 67521627 67521695 -92078088 - B4A SINE B4 -2 290 223 4 1100 245 310 33 74 chr3 67521842 67521964 -92077819 - B1F2 SINE Alu -15 134 18 4 1100 606 306 66 6 chr3 67521869 67522050 -92077733 - B4A SINE B4 -96 196 5 4 1100 678 322 140 16 chr3 67522086 67523318 -92076465 - L1ME3A LINE L1 -50 6123 4728 4 1100 267 211 111 14 chr3 67523353 67523425 -92076358 + ID4 SINE ID 1 79 -4 4 1100 351 214 14 0 chr3 67523511 67523581 -92076202 + Lx6 LINE L1 6624 6694 -766 5 1100 379 38 0 37 chr3 67523584 67523638 -92076145 + L1Md_F2 LINE L1 6519 6570 -12 5 1100 484 278 126 57 chr3 67523641 67524045 -92075738 - Lx7 LINE L1 -129 7567 7136 5 1100 584 256 51 11 chr3 67524058 67524236 -92075547 - Lx7 LINE L1 -603 7093 6909 5 1100 251 274 61 17 chr3 67524272 67524387 -92075396 - L1ME3A LINE L1 -1495 4651 4532 4 1100 275 239 42 14 chr3 67524465 67524537 -92075246 - RSINE1 SINE B4 -8 157 84 5 1100 318 265 59 0 chr3 67524537 67524639 -92075144 + Lx9 LINE L1 6139 6246 -1398 5 1100 517 213 126 50 chr3 67524733 67524884 -92074899 - Lx7 LINE L1 0 7696 7528 5 1100 333 93 0 0 chr3 67524884 67524938 -92074845 + (ATAAG)n Simple_repeat Simple_repeat 2 55 0 5 1100 517 213 126 50 chr3 67524938 67524984 -92074799 - Lx7 LINE L1 -169 7527 7484 5 1100 7651 75 13 1 chr3 67524978 67525997 -92073786 + L1_Mm LINE L1 3747 4777 -1106 5 1100 19100 110 14 22 chr3 67525995 67529518 -92070265 - L1Md_F LINE L1 -2155 3728 238 5 1100 14551 167 99 85 chr3 67529518 67530546 -92069237 - L1_Mur3 LINE L1 -86 5794 4782 5 1100 5033 63 5 5 chr3 67530546 67531153 -92068630 - L1_Mus1 LINE L1 -1 6566 5960 6 1100 14551 167 99 85 chr3 67531153 67533791 -92065992 - L1_Mur3 LINE L1 -1099 4781 2075 5 1100 996 281 107 24 chr3 67533771 67534388 -92065395 - L1M2 LINE L1 -2448 3695 3028 6 1100 550 356 60 63 chr3 67534401 67534848 -92064935 - Lx8 LINE L1 -2 7471 7026 6 1100 482 263 62 17 chr3 67535529 67535707 -92064076 + L1M3 LINE L1 5386 5571 -600 6 1100 408 328 39 17 chr3 67535777 67535957 -92063826 - RMER15 LTR ERVL -16 559 376 6 1100 298 337 76 55 chr3 67537605 67537789 -92061994 - L2a LINE L2 0 3426 3178 6 1100 306 267 33 11 chr3 67537789 67537880 -92061903 - MTE2a LTR MaLR 0 379 287 6 1100 306 73 0 0 chr3 67537894 67537935 -92061848 + (TCC)n Simple_repeat Simple_repeat 2 42 0 6 1100 270 136 33 33 chr3 67539349 67539410 -92060373 + (TCTCTG)n Simple_repeat Simple_repeat 6 66 0 6 1100 468 219 0 0 chr3 67539411 67539580 -92060203 + CT-rich Low_complexity Low_complexity 2 170 0 6 1100 304 170 18 62 chr3 67539589 67539702 -92060081 + (TCTCTG)n Simple_repeat Simple_repeat 3 110 0 7 1100 366 121 0 0 chr3 67539708 67539774 -92060009 + (TC)n Simple_repeat Simple_repeat 1 66 0 7 1100 568 261 56 98 chr3 67539815 67540100 -92059683 - B4 SINE B4 -18 274 2 7 1100 216 0 0 0 chr3 67540144 67540168 -92059615 + (T)n Simple_repeat Simple_repeat 1 24 0 7 1100 775 238 212 89 chr3 67540907 67541313 -92058470 - MT2B2 LTR ERVL 0 584 38 7 1100 308 307 109 34 chr3 67541328 67541567 -92058216 - L2a LINE L2 -659 2760 2504 6 1100 3570 96 9 0 chr3 67542508 67542975 -92056808 + L1_Mus3 LINE L1 6161 6631 -7 7 1100 288 0 0 0 chr3 67542978 67543010 -92056773 + (TAA)n Simple_repeat Simple_repeat 2 33 0 7 1100 219 188 0 40 chr3 67543085 67543135 -92056648 + CT-rich Low_complexity Low_complexity 5 52 0 7 1100 972 155 0 0 chr3 67543416 67543558 -92056225 + B1_Mur4 SINE Alu 2 143 -7 7 1100 263 322 49 113 chr3 67543705 67543908 -92055875 - B4A SINE B4 -48 244 55 7 1100 808 135 23 12 chr3 67543920 67544092 -92055691 + CT-rich Low_complexity Low_complexity 2 175 0 8 1100 306 0 0 0 chr3 67544894 67544928 -92054855 + (TC)n Simple_repeat Simple_repeat 2 35 0 8 1100 243 324 44 71 chr3 67546263 67546376 -92053407 - LTR78 LTR ERV1 -344 960 851 8 1100 612 206 0 23 chr3 67546379 67546553 -92053230 + GA-rich Low_complexity Low_complexity 2 171 0 8 1100 633 83 9 27 chr3 67546564 67546676 -92053107 - L1Md_F2 LINE L1 0 6582 6473 8 1100 551 147 55 4 chr3 67547218 67547322 -92052461 - ORR1C2 LTR MaLR -87 297 136 8 1100 423 279 63 14 chr3 67547456 67547598 -92052185 - B1F1 SINE Alu 0 149 1 8 1100 890 221 94 48 chr3 67547694 67548003 -92051780 - MER33 DNA MER1_type -1 323 1 8 1100 2611 158 41 13 chr3 67548374 67548694 -92051089 + RMER1A Other Other 554 870 -160 8 1100 227 0 0 85 chr3 67548694 67548741 -92051042 + (TTG)n Simple_repeat Simple_repeat 1 43 0 8 1100 2611 158 41 13 chr3 67548741 67548765 -92051018 + RMER1A Other Other 871 910 -120 8 1100 204 67 0 0 chr3 67548765 67548795 -92050988 + (TG)n Simple_repeat Simple_repeat 2 31 0 9 1100 2611 158 41 13 chr3 67548795 67548911 -92050872 + RMER1A Other Other 911 1027 -3 8 1100 181 250 55 14 chr3 67549883 67549956 -92049827 - L2a LINE L2 -68 3358 3283 9 1100 387 291 176 68 chr3 67550076 67550400 -92049383 - ORR1E LTR MaLR 0 359 1 9 1100 606 312 175 2 chr3 67550401 67550841 -92048942 - L2a LINE L2 -379 3040 2525 9 1100 38900 44 0 3 chr3 67551175 67557544 -92042239 - L1Md_T LINE L1 0 6585 135 9 1100 674 246 0 0 chr3 67559102 67559236 -92040547 + B1_Mur2 SINE Alu 2 135 -14 9 1100 1832 107 14 104 chr3 67559271 67559625 -92040158 + RLTRETN_Mm LTR ERVK 1 322 0 9 1100 305 211 30 91 chr3 67559648 67559747 -92040036 - L1MD2 LINE L1 -74 6285 6193 9 1100 2004 159 10 77 chr3 67560157 67560558 -92039225 - ORR1B1 LTR MaLR 0 394 21 9 1100 909 116 7 0 chr3 67562611 67562749 -92037034 + B1_Mus2 SINE Alu 9 147 0 9 1100 23 54 0 0 chr3 67562749 67562786 -92036997 + AT_rich Low_complexity Low_complexity 1 37 0 9 1100 26 0 0 0 chr3 67562938 67562964 -92036819 + AT_rich Low_complexity Low_complexity 1 26 0 1 1100 189 107 0 0 chr3 67563867 67563895 -92035888 + (T)n Simple_repeat Simple_repeat 1 28 0 1 1100 229 269 0 0 chr3 67564942 67564994 -92034789 + (CA)n Simple_repeat Simple_repeat 2 53 0 1 1100 474 101 0 0 chr3 67565313 67565382 -92034401 + (TA)n Simple_repeat Simple_repeat 2 70 0 1 1100 531 82 0 0 chr3 67565449 67565522 -92034261 + (TCC)n Simple_repeat Simple_repeat 3 75 0 1 1100 268 344 84 7 chr3 67565568 67565723 -92034060 - L1M5 LINE L1 -354 5840 5674 1 1100 372 333 51 46 chr3 67565724 67565903 -92033880 + MER20 DNA MER1_type 1 181 -38 1 1100 1170 249 118 24 chr3 67565903 67566241 -92033542 - ORR1D2 LTR MaLR 0 370 1 1 1100 372 333 51 46 chr3 67566241 67566278 -92033505 + MER20 DNA MER1_type 182 218 -1 1 1100 270 250 16 0 chr3 67567326 67567390 -92032393 + B3A SINE B2 1 65 -133 1 1100 201 171 49 0 chr3 67567455 67567496 -92032287 + MIR SINE MIR 220 262 0 1 1100 1454 193 108 15 chr3 67567906 67568248 -92031535 + ORR1D1 LTR MaLR 1 374 0 1 1100 234 319 140 7 chr3 67570325 67570461 -92029322 - MER58A DNA MER1_type -8 216 63 1 1100 2584 211 43 21 chr3 67570751 67571175 -92028608 + RMER1C Other Other 459 1196 -146 1 1100 1011 124 0 17 chr3 67571175 67571355 -92028428 + (TTC)n Simple_repeat Simple_repeat 1 177 0 1 1100 2584 209 43 21 chr3 67571355 67571501 -92028282 + RMER1C Other Other 1197 1342 0 1 1100 287 315 55 9 chr3 67571766 67571875 -92027908 - MER45C DNA Tip100 -834 119 6 1 1100 729 300 77 59 chr3 67572401 67572776 -92027007 - MLT1C LTR MaLR -80 387 6 1 1100 396 55 0 0 chr3 67574416 67574471 -92025312 + (TATG)n Simple_repeat Simple_repeat 2 56 0 1 1100 4940 123 12 3 chr3 67574479 67575197 -92024586 - Lx4A LINE L1 -3 7055 6331 1 1100 273 247 84 21 chr3 67575636 67575731 -92024052 - MIRm SINE MIR -2 274 174 1 1100 527 173 0 0 chr3 67576205 67576315 -92023468 - Lx3A LINE L1 -2 6979 6870 1 1100 2218 139 49 12 chr3 67576316 67576724 -92023059 + RLTR26 LTR ERVK 220 642 0 1 1100 2005 108 30 0 chr3 67576724 67577021 -92022762 - Lx3_Mus LINE L1 -383 6626 6321 1 1100 799 97 24 0 chr3 67578768 67578892 -92020891 + RLTR24 LTR ERV1 1 127 -402 1 1100 2869 41 0 101 chr3 67578893 67579299 -92020484 + RLTR10B2 LTR ERVK 1 365 0 1 1100 1315 73 11 6 chr3 67579299 67579478 -92020305 + MMERVK10C-int LTR ERVK 1 180 -7401 1 1100 245 200 0 0 chr3 67579478 67579523 -92020260 + RLTR27 LTR ERVK 231 275 -34 1 1100 383 23 0 0 chr3 67579523 67579566 -92020217 + MMERVK10C-int LTR ERVK 225 267 -7314 1 1100 498 87 38 45 chr3 67579654 67579787 -92019996 + GA-rich Low_complexity Low_complexity 3 134 0 1 1100 339 111 0 0 chr3 67579787 67579832 -92019951 + RLTR10-int LTR ERVK 93 137 -6405 1 1100 2860 56 0 0 chr3 67579836 67580176 -92019607 + RLTR10-int LTR ERVK 653 992 -995 1 1100 505 311 39 28 chr3 67580201 67580593 -92019190 + RLTR10-int LTR ERVK 822 1566 -6015 1 1100 1649 74 100 0 chr3 67580605 67580834 -92018949 + RLTR10-int LTR ERVK 5004 5255 -1287 1 1100 4444 132 13 3 chr3 67580838 67581517 -92018266 + IAPEY3-int LTR ERVK 6995 7680 0 1 1100 2668 49 0 178 chr3 67581517 67581961 -92017822 + RLTR10B2 LTR ERVK 1 365 0 1 1100 1628 163 13 32 chr3 67582032 67582348 -92017435 + RLTR24 LTR ERV1 167 476 -53 1 1100 25 31 0 0 chr3 67582467 67582499 -92017284 + AT_rich Low_complexity Low_complexity 1 32 0 1 1100 333 111 0 18 chr3 67582531 67582586 -92017197 + RLTR24 LTR ERV1 476 529 0 1 1100 230 290 16 0 chr3 67582667 67582729 -92017054 + (CA)n Simple_repeat Simple_repeat 2 64 0 1 1100 781 247 0 70 chr3 67583128 67583328 -92016455 + B3A SINE B2 11 196 -2 1 1100 416 232 0 50 chr3 67584162 67584262 -92015521 + ID_B1 SINE B4 126 220 -4 1 1100 280 288 0 12 chr3 67584899 67584980 -92014803 + CT-rich Low_complexity Low_complexity 3 82 0 1 1100 327 342 51 66 chr3 67585120 67585377 -92014406 + RLTR26 LTR ERVK 165 417 -225 1 1100 238 318 11 22 chr3 67585424 67585514 -92014269 + (CTG)n Simple_repeat Simple_repeat 3 91 0 1 1100 24 53 0 0 chr3 67585623 67585661 -92014122 + AT_rich Low_complexity Low_complexity 1 38 0 1 1100 360 306 129 36 chr3 67585702 67586088 -92013695 - L1MC5 LINE L1 -51 7910 7489 1 1100 211 277 46 0 chr3 67586548 67586613 -92013170 - ID4_ SINE ID -14 69 2 1 1100 219 317 49 0 chr3 67586725 67586848 -92012935 - MIR SINE MIR -14 248 120 1 1100 27 0 0 0 chr3 67587820 67587847 -92011936 + AT_rich Low_complexity Low_complexity 1 27 0 1 1100 1758 180 33 9 chr3 67587847 67588177 -92011606 - Lx5 LINE L1 0 7050 6713 1 1100 1313 284 76 0 chr3 67588515 67588896 -92010887 + MTD LTR MaLR 5 414 -5 1 1100 2430 254 66 20 chr3 67589787 67590591 -92009192 - L1MB7 LINE L1 -5 6179 5339 1 1100 36032 36 1 0 chr3 67590628 67596466 -92003317 + L1Md_T LINE L1 1 5589 -297 1 1100 9104 6 0 4 chr3 67596466 67597506 -92002277 + L1Md_T LINE L1 5590 6585 0 1 1100 546 144 57 19 chr3 67597851 67597957 -92001826 + MT2A LTR ERVL 4 113 -420 1 1100 297 118 0 0 chr3 67597969 67598020 -92001763 + (TA)n Simple_repeat Simple_repeat 1 51 0 1 1100 8025 57 1 5 chr3 67598173 67599789 -91999994 - L1Md_F2 LINE L1 0 6582 4976 1 1100 666 249 73 32 chr3 67599856 67600153 -91999630 + MT2A LTR ERVL 96 545 -56 1 1100 560 154 10 0 chr3 67600155 67600259 -91999524 + CT-rich Low_complexity Low_complexity 1 105 0 1 1100 540 164 0 0 chr3 67600258 67600392 -91999391 + (CA)n Simple_repeat Simple_repeat 1 134 0 1 1100 6152 202 21 25 chr3 67600392 67601653 -91998130 + MERVL_2A-int LTR ERVL 8 1264 -4497 1 1100 2141 47 58 81 chr3 67601653 67601832 -91997951 - ORR1A1 LTR MaLR -7 339 187 1 1100 4024 72 2 11 chr3 67601832 67602354 -91997429 - L1_Mus2 LINE L1 0 6566 6050 1 1100 2141 47 58 81 chr3 67602354 67602521 -91997262 - ORR1A1 LTR MaLR -160 186 1 1 1100 2610 166 23 12 chr3 67602521 67602953 -91996830 + MERVL_2A-int LTR ERVL 1257 1693 -4068 1 1100 6121 166 39 13 chr3 67602954 67604024 -91995759 + MERVL_2A-int LTR ERVL 4661 5758 -3 1 1100 1242 196 118 193 chr3 67604027 67604603 -91995180 + MT2A LTR ERVL 1 533 0 1 1100 194 269 205 0 chr3 67605835 67605913 -91993870 + L2a LINE L2 3333 3426 0 1 1100 237 65 0 0 chr3 67605920 67605951 -91993832 + (GGAA)n Simple_repeat Simple_repeat 2 32 0 1 1100 21 0 0 0 chr3 67606084 67606105 -91993678 + AT_rich Low_complexity Low_complexity 1 21 0 1 1100 192 77 0 0 chr3 67606145 67606171 -91993612 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 1 1100 348 329 102 7 chr3 67606190 67606337 -91993446 - B3A SINE B2 -34 164 4 1 1100 299 271 177 29 chr3 67606352 67606561 -91993222 - MER33 DNA MER1_type -75 249 10 1 1100 187 326 35 0 chr3 67606595 67606681 -91993102 - MIR SINE MIR -165 97 9 1 1100 243 79 0 0 chr3 67607572 67607610 -91992173 + (GTTTG)n Simple_repeat Simple_repeat 2 39 0 1 1100 237 206 123 0 chr3 67607805 67607878 -91991905 - MLT1G1 LTR MaLR -484 95 14 1 1100 264 59 0 0 chr3 67607993 67608027 -91991756 + (TG)n Simple_repeat Simple_repeat 1 34 0 1 1100 534 308 20 0 chr3 67608032 67608178 -91991605 - RSINE1 SINE B4 -15 150 2 1 1100 1193 253 139 6 chr3 67609977 67610343 -91989440 + MTD LTR MaLR 1 415 -4 1 1100 26 30 0 0 chr3 67610611 67610644 -91989139 + AT_rich Low_complexity Low_complexity 1 33 0 1 1100 1233 210 5 0 chr3 67612064 67612269 -91987514 - B3 SINE B2 -8 208 3 1 1100 360 229 0 32 chr3 67612583 67612709 -91987074 + Lx7 LINE L1 7575 7696 0 1 1100 890 164 113 34 chr3 67612829 67613006 -91986777 + B3 SINE B2 19 209 -7 1 1100 770 316 50 53 chr3 67613048 67613389 -91986394 + MLT1A0 LTR MaLR 1 340 -25 1 1100 244 310 102 58 chr3 67613420 67613464 -91986319 - Charlie1b DNA MER1_type -213 310 260 1 1100 255 61 0 0 chr3 67613464 67613497 -91986286 + (TG)n Simple_repeat Simple_repeat 2 34 0 1 1100 244 310 102 58 chr3 67613497 67613678 -91986105 - Charlie1b DNA MER1_type -264 259 75 1 1100 537 335 25 12 chr3 67613725 67613750 -91986033 - RSINE1 SINE B4 -1 164 140 1 1100 324 0 0 0 chr3 67613750 67613786 -91985997 + (TG)n Simple_repeat Simple_repeat 1 36 0 1 1100 537 335 25 12 chr3 67613786 67613920 -91985863 - RSINE1 SINE B4 -26 139 3 1 1100 3028 55 0 6 chr3 67615136 67615483 -91984300 - ORR1A1 LTR MaLR -1 345 1 1 1100 454 288 163 37 chr3 67617239 67617484 -91982299 + ORR1E LTR MaLR 18 293 -66 1 1100 228 184 10 20 chr3 67617528 67617628 -91982155 + (TA)n Simple_repeat Simple_repeat 1 99 0 1 1100 495 48 0 0 chr3 67617648 67617710 -91982073 + (TAGA)n Simple_repeat Simple_repeat 4 65 0 1 1100 586 283 99 35 chr3 67617951 67618123 -91981660 - B3A SINE B2 -15 183 1 1 1100 306 0 0 0 chr3 67618405 67618439 -91981344 + (TG)n Simple_repeat Simple_repeat 1 34 0 1 1100 302 245 70 89 chr3 67618678 67618704 -91981079 - B3A SINE B2 -4 194 173 1 1100 279 0 0 0 chr3 67618704 67618735 -91981048 + (TG)n Simple_repeat Simple_repeat 2 32 0 1 1100 302 245 70 89 chr3 67618735 67618865 -91980918 - B3A SINE B2 -26 172 41 1 1100 404 292 34 34 chr3 67618859 67618976 -91980807 + B4A SINE B4 137 253 -39 1 1100 721 277 179 23 chr3 67620262 67620732 -91979051 + MER34A1 LTR ERV1 5 563 -24 1 1100 273 370 74 39 chr3 67620914 67621251 -91978532 - MLT1K LTR MaLR -110 485 137 1 1100 198 0 0 0 chr3 67621285 67621307 -91978476 + (TAAAA)n Simple_repeat Simple_repeat 2 23 0 1 1100 622 299 7 0 chr3 67621925 67622062 -91977721 + ID_B1 SINE B4 81 218 -6 1 1100 869 244 43 28 chr3 67622515 67622726 -91977057 + B3 SINE B2 1 214 -2 1 1100 879 213 11 0 chr3 67623246 67623420 -91976363 - RLTR25B LTR ERVK -852 176 1 1 1100 773 54 0 9 chr3 67623439 67623551 -91976232 + (TTTC)n Simple_repeat Simple_repeat 4 114 0 1 1100 438 211 3 2 chr3 67623733 67623838 -91975945 - RLTR19-int LTR ERVK -5162 975 889 1 1100 373 222 0 0 chr3 67624037 67624109 -91975674 - RLTR19-int LTR ERVK -5277 860 789 1 1100 13267 34 1 1 chr3 67624920 67626482 -91973301 - L1Md_F3 LINE L1 -347 5536 3974 1 1100 594 56 0 0 chr3 67626476 67626547 -91973236 + L1Md_F3 LINE L1 5516 5586 -297 1 1100 8461 41 17 1 chr3 67626547 67627526 -91972257 + L1Md_F3 LINE L1 5587 6581 -3 1 1100 1878 158 51 3 chr3 67628225 67628561 -91971222 + RMER1A Other Other 678 1029 -1 1 1100 668 305 19 48 chr3 67628575 67628693 -91971090 + B4A SINE B4 92 207 -85 1 1100 2934 114 5 12 chr3 67628693 67629101 -91970682 + MTB_Mm LTR MaLR 3 407 0 1 1100 668 305 19 48 chr3 67629101 67629189 -91970594 + B4A SINE B4 208 292 0 1 1100 336 83 0 0 chr3 67629203 67629251 -91970532 + (TG)n Simple_repeat Simple_repeat 1 48 0 1 1100 219 287 23 0 chr3 67629879 67629966 -91969817 - L2 LINE L2 -995 2424 2336 1 1100 201 217 22 0 chr3 67630031 67630077 -91969706 - L2a LINE L2 -4 3422 3376 1 1100 22 0 0 0 chr3 67630179 67630201 -91969582 + AT_rich Low_complexity Low_complexity 1 22 0 1 1100 260 230 76 63 chr3 67630202 67630360 -91969423 - Lx9 LINE L1 -4 7640 7481 1 1100 378 0 0 0 chr3 67631239 67631281 -91968502 + (CA)n Simple_repeat Simple_repeat 2 43 0 2 1100 358 333 85 38 chr3 67631568 67631780 -91968003 - MIRc SINE MIR -32 236 15 2 1100 502 347 79 57 chr3 67632071 67632389 -91967394 - MamGypLTR2b LTR Gypsy -189 733 409 2 1101 293 155 0 17 chr3 67633549 67633608 -91966175 + CT-rich Low_complexity Low_complexity 4 61 0 2 1101 1105 108 6 6 chr3 67633614 67633791 -91965992 + (TTTC)n Simple_repeat Simple_repeat 4 180 0 2 1101 343 223 142 67 chr3 67634056 67634176 -91965607 + B3A SINE B2 15 143 -55 2 1101 239 385 51 34 chr3 67635962 67636137 -91963646 + ORR1D2 LTR MaLR 6 183 -187 2 1101 601 276 117 29 chr3 67636635 67636840 -91962943 - B4 SINE B4 -43 249 27 2 1101 180 0 0 0 chr3 67637305 67637325 -91962458 + (T)n Simple_repeat Simple_repeat 1 20 0 2 1101 201 39 0 0 chr3 67638382 67638408 -91961375 + (TTTTA)n Simple_repeat Simple_repeat 3 28 0 2 1101 473 215 0 2 chr3 67638470 67638559 -91961224 - B3A SINE B2 -106 89 2 2 1101 262 319 0 0 chr3 67638853 67638925 -91960858 + RMER15 LTR ERVL 3 74 -501 2 1101 833 97 0 0 chr3 67638929 67639042 -91960741 - L1_Mus3 LINE L1 -309 6329 6217 2 1101 1476 58 60 176 chr3 67639042 67639377 -91960406 + L1_Mus3 LINE L1 6339 6634 -4 2 1101 1518 266 12 62 chr3 67639480 67640066 -91959717 + RMER15 LTR ERVL 27 561 -14 2 1101 401 34 17 0 chr3 67640636 67640695 -91959088 + L1Md_F2 LINE L1 6523 6582 0 2 1101 615 349 102 35 chr3 67641816 67642295 -91957488 - Lx8 LINE L1 -8 7465 6955 2 1101 2198 97 17 0 chr3 67642365 67642664 -91957119 - Lx LINE L1 -2 6652 6349 2 1101 342 370 31 13 chr3 67642704 67642863 -91956920 - LTR40a LTR ERVL -54 465 304 2 1101 651 26 0 0 chr3 67644931 67645008 -91954775 + (GAA)n Simple_repeat Simple_repeat 1 77 0 2 1101 301 337 0 37 chr3 67645008 67645116 -91954667 + HAL1-3A_ME LINE L1 2284 2387 -471 2 1101 541 298 121 8 chr3 67645529 67645769 -91954014 - LTR55 LTR ERV -270 278 12 2 1101 279 185 158 12 chr3 67646394 67646476 -91953307 + PB1D10 SINE Alu 22 115 -2 2 1101 216 276 17 0 chr3 67646500 67646558 -91953225 + ID2 SINE ID 15 73 -10 2 1101 1631 103 306 0 chr3 67647859 67648140 -91951643 - ORR1B2 LTR MaLR 0 367 1 2 1101 374 302 134 2 chr3 67648151 67648388 -91951395 + Kanga11a DNA Tc2 256 529 -441 2 1101 3234 32 5 0 chr3 67649726 67650095 -91949688 - L1Md_F2 LINE L1 0 6582 6212 2 1101 7701 214 75 9 chr3 67650262 67651914 -91947869 + Lx6 LINE L1 5074 6877 -583 2 1101 623 13 13 0 chr3 67651914 67651990 -91947793 + (GA)n Simple_repeat Simple_repeat 1 77 0 2 1101 7701 234 82 10 chr3 67651990 67652553 -91947230 + Lx6 LINE L1 6878 7460 0 2 1101 791 111 26 0 chr3 67653168 67653285 -91946498 + PB1D9 SINE Alu 1 120 0 2 1101 1043 154 7 0 chr3 67653999 67654148 -91945635 - B1_Mur4 SINE Alu 0 150 1 2 1101 378 0 0 0 chr3 67654243 67654285 -91945498 + (CA)n Simple_repeat Simple_repeat 2 43 0 2 1101 375 78 0 0 chr3 67654502 67654553 -91945230 + (TCTG)n Simple_repeat Simple_repeat 2 52 0 2 1101 324 265 0 0 chr3 67654555 67654623 -91945160 - ID_B1 SINE B4 -14 210 143 2 1101 198 191 0 0 chr3 67654703 67654745 -91945038 + (CGGGG)n Simple_repeat Simple_repeat 2 43 0 2 1101 323 197 0 45 chr3 67655123 67655256 -91944527 + T-rich Low_complexity Low_complexity 1 127 0 2 1101 579 29 0 0 chr3 67655639 67655708 -91944075 + (TA)n Simple_repeat Simple_repeat 1 69 0 2 1101 649 252 61 7 chr3 67655908 67656056 -91943727 - ID_B1 SINE B4 -68 156 1 2 1101 384 155 0 0 chr3 67656186 67656257 -91943526 + CT-rich Low_complexity Low_complexity 2 72 0 2 1101 356 256 91 91 chr3 67656273 67656548 -91943235 - L1ME3B LINE L1 -196 6044 5770 2 1101 270 228 31 52 chr3 67657264 67657361 -91942422 - L1MC4 LINE L1 -822 7220 7126 2 1101 411 21 0 0 chr3 67657691 67657739 -91942044 + (TG)n Simple_repeat Simple_repeat 2 49 0 2 1101 494 314 22 0 chr3 67657739 67657876 -91941907 - B4A SINE B4 -23 269 130 2 1101 286 275 43 0 chr3 67657904 67657973 -91941810 - B4A SINE B4 -219 73 2 2 1101 404 306 99 84 chr3 67658625 67658828 -91940955 + ORR1E LTR MaLR 1 206 -168 2 1101 307 279 64 35 chr3 67659014 67659185 -91940598 - HAL1b LINE L1 -510 1499 1324 2 1101 519 327 122 39 chr3 67659286 67659423 -91940360 - L1MC4 LINE L1 -4607 1608 1481 2 1101 396 0 0 0 chr3 67659423 67659467 -91940316 + (TA)n Simple_repeat Simple_repeat 2 45 0 2 1101 519 327 122 39 chr3 67659467 67659771 -91940012 - L1MC4 LINE L1 -4735 1480 1132 2 1101 203 258 0 0 chr3 67660167 67660229 -91939554 + T-rich Low_complexity Low_complexity 1 62 0 2 1101 586 135 0 11 chr3 67660284 67660374 -91939409 + B1_Mus2 SINE Alu 47 135 -12 2 1101 608 238 20 27 chr3 67660669 67660816 -91938967 - B1_Mur1 SINE Alu -3 146 1 2 1101 450 288 108 84 chr3 67660902 67661152 -91938631 - B4 SINE B4 -18 274 19 2 1101 214 250 234 0 chr3 67661522 67661586 -91938197 - B1_Mus1 SINE Alu -34 114 36 2 1101 228 291 37 37 chr3 67662395 67662477 -91937306 - MER34 LTR ERV1 -65 477 396 2 1101 274 239 150 92 chr3 67662868 67662988 -91936795 - LTR48 LTR ERV1 -643 144 18 2 1101 790 185 142 32 chr3 67663726 67663916 -91935867 - B3 SINE B2 0 216 6 2 1101 238 319 78 21 chr3 67664454 67664601 -91935182 - L1M5 LINE L1 -489 5635 5484 2 1101 182 296 0 36 chr3 67664806 67664862 -91934921 + MIRc SINE MIR 100 153 -115 2 1101 226 286 100 0 chr3 67665611 67665681 -91934102 - ID2 SINE ID -5 78 2 2 1101 213 359 78 49 chr3 67665708 67665913 -91933870 - L3 LINE CR1 -31 4458 4248 2 1101 2709 164 121 34 chr3 67665960 67666498 -91933285 + RMER4B LTR ERVK 1 585 0 2 1101 300 77 15 30 chr3 67666540 67666607 -91933176 + (TTTTTG)n Simple_repeat Simple_repeat 2 67 0 2 1101 14398 24 0 0 chr3 67666657 67669102 -91930681 - L1Md_T LINE L1 0 6582 4138 2 1101 655 118 20 0 chr3 67669116 67669218 -91930565 - L1Md_A LINE L1 -6181 543 440 2 1101 233 336 131 0 chr3 67669339 67669446 -91930337 - MIR SINE MIR -34 228 108 2 1101 426 294 200 44 chr3 67669461 67669842 -91929941 - MLT2B1 LTR ERVL -27 535 2 2 1101 841 125 62 0 chr3 67669994 67670122 -91929661 - B1_Mur4 SINE Alu -13 137 2 2 1101 4188 31 0 4 chr3 67670135 67670626 -91929157 - L1Md_F3 LINE L1 -14 6570 6082 2 1101 207 0 0 0 chr3 67673892 67673915 -91925868 + (T)n Simple_repeat Simple_repeat 1 23 0 2 1101 1235 34 0 7 chr3 67673915 67674063 -91925720 - B1_Mus2 SINE Alu 0 147 1 2 1101 324 0 0 0 chr3 67674290 67674326 -91925457 + (TTCA)n Simple_repeat Simple_repeat 1 36 0 2 1101 212 334 132 14 chr3 67674525 67674701 -91925082 - MIRb SINE MIR -59 209 13 2 1101 288 0 0 0 chr3 67674857 67674889 -91924894 + (TG)n Simple_repeat Simple_repeat 1 32 0 2 1101 708 281 107 69 chr3 67675524 67675841 -91923942 - ORR1E LTR MaLR 0 359 31 2 1101 1387 323 53 63 chr3 67675841 67676545 -91923238 - MTE-int LTR MaLR -784 796 100 2 1101 920 299 163 4 chr3 67676545 67677012 -91922771 + RCHARR1 DNA MER1_type 4 544 -430 2 1101 3358 31 12 2 chr3 67677122 67677548 -91922235 + L1Md_F2 LINE L1 5156 5585 -298 2 1101 7882 59 1 6 chr3 67677549 67678550 -91921233 + L1Md_F2 LINE L1 5587 6582 0 2 1101 21 57 0 0 chr3 67678563 67678598 -91921185 + AT_rich Low_complexity Low_complexity 1 35 0 2 1101 1718 115 63 0 chr3 67678612 67678881 -91920902 - L1_Mus3 LINE L1 -1 6637 6352 2 1101 201 147 0 0 chr3 67679065 67679099 -91920684 + (GGA)n Simple_repeat Simple_repeat 3 36 0 2 1101 532 301 63 10 chr3 67679269 67679474 -91920309 - B3 SINE B2 0 216 1 2 1101 800 263 95 43 chr3 67680018 67680364 -91919419 - MER113 DNA MER1_type -86 435 72 2 1101 944 311 54 58 chr3 67681342 67681843 -91917940 - MLT1D LTR MaLR 0 505 7 2 1101 29 0 0 0 chr3 67682937 67682966 -91916817 + AT_rich Low_complexity Low_complexity 1 29 0 2 1101 513 43 21 41 chr3 67683458 67683555 -91916228 + (TA)n Simple_repeat Simple_repeat 2 96 0 2 1101 786 340 111 17 chr3 67683665 67684081 -91915702 - RMER5 LTR ERV1 -40 494 40 2 1101 258 179 216 64 chr3 67684296 67684421 -91915362 + MLT1J1 LTR MaLR 14 157 -287 2 1101 662 318 123 0 chr3 67684933 67685185 -91914598 + B4A SINE B4 1 283 -9 2 1101 461 307 26 7 chr3 67685754 67685908 -91913875 + MER5A1 DNA MER1_type 2 158 -8 2 1101 6338 111 37 8 chr3 67685923 67686938 -91912845 - Lx LINE L1 -4 6650 5606 2 1101 708 23 0 0 chr3 67687433 67687519 -91912264 + (GA)n Simple_repeat Simple_repeat 1 86 0 2 1101 297 0 0 0 chr3 67687591 67687624 -91912159 + (TG)n Simple_repeat Simple_repeat 2 34 0 2 1101 447 302 128 30 chr3 67687627 67687893 -91911890 - B4A SINE B4 0 292 1 2 1101 21 36 0 0 chr3 67687898 67687926 -91911857 + AT_rich Low_complexity Low_complexity 1 28 0 2 1101 678 226 134 21 chr3 67687928 67688122 -91911661 - B3 SINE B2 0 216 1 2 1101 271 290 99 12 chr3 67688128 67688220 -91911563 - PB1D10 SINE Alu -6 111 14 2 1101 355 167 15 15 chr3 67689807 67689874 -91909909 - ID4_ SINE ID -15 68 2 2 1101 288 0 0 0 chr3 67691016 67691048 -91908735 + (TC)n Simple_repeat Simple_repeat 2 33 0 2 1101 237 33 0 0 chr3 67691207 67691237 -91908546 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 2 1101 249 352 28 28 chr3 67691611 67691719 -91908064 + L2b LINE L2 3248 3355 -20 2 1101 228 137 0 0 chr3 67691948 67691999 -91907784 + (T)n Simple_repeat Simple_repeat 1 51 0 2 1101 8053 29 0 0 chr3 67692007 67693283 -91906500 - L1Md_T LINE L1 -1 6581 5306 2 1101 597 230 80 42 chr3 67693295 67693508 -91906275 - ID_B1 SINE B4 0 224 4 2 1101 24 32 0 0 chr3 67693659 67693690 -91906093 + AT_rich Low_complexity Low_complexity 1 31 0 2 1101 411 21 0 0 chr3 67693826 67693874 -91905909 + (TG)n Simple_repeat Simple_repeat 2 49 0 3 1101 342 0 0 0 chr3 67696671 67696709 -91903074 + (TG)n Simple_repeat Simple_repeat 2 39 0 3 1101 324 0 0 0 chr3 67699234 67699270 -91900513 + (TG)n Simple_repeat Simple_repeat 1 36 0 3 1101 264 30 0 0 chr3 67699270 67699302 -91900481 + (GA)n Simple_repeat Simple_repeat 1 33 0 3 1101 817 262 19 5 chr3 67699415 67699622 -91900161 - B3 SINE B2 -6 210 1 3 1101 339 275 225 7 chr3 67699622 67699799 -91899984 - MIR SINE MIR -43 219 9 3 1101 1080 296 118 30 chr3 67700194 67700891 -91898892 - L1MA4 LINE L1 -284 6016 5259 3 1101 1267 273 97 23 chr3 67701247 67702023 -91897760 + L1M2 LINE L1 4198 5030 -1113 3 1101 1081 129 124 5 chr3 67702297 67702499 -91897284 - URR1A DNA MER1_type 0 226 1 3 1101 262 215 46 0 chr3 67703251 67703316 -91896467 + ID4 SINE ID 3 70 -13 3 1101 1080 237 67 50 chr3 67704235 67704533 -91895250 - Lx8 LINE L1 -147 7326 7024 3 1101 544 346 46 0 chr3 67704830 67705047 -91894736 + MIR SINE MIR 29 255 -7 3 1101 645 237 7 7 chr3 67705327 67705467 -91894316 - B1F SINE Alu -9 140 1 3 1101 507 306 9 92 chr3 67705515 67705832 -91893951 + B4A SINE B4 2 292 0 3 1101 22 35 0 0 chr3 67706220 67706249 -91893534 + AT_rich Low_complexity Low_complexity 1 29 0 3 1101 1667 44 0 0 chr3 67706302 67706505 -91893278 + L1Md_T LINE L1 6380 6582 0 3 1101 26 30 0 0 chr3 67707237 67707270 -91892513 + AT_rich Low_complexity Low_complexity 1 33 0 3 1101 1136 153 119 0 chr3 67707271 67707473 -91892310 - URR1A DNA MER1_type 0 226 1 3 1101 1171 197 102 134 chr3 67708127 67708560 -91891223 + MTD LTR MaLR 1 419 0 3 1101 21 89 0 0 chr3 67708725 67708781 -91891002 + AT_rich Low_complexity Low_complexity 1 56 0 3 1101 779 225 24 39 chr3 67708984 67709192 -91890591 + B3 SINE B2 5 209 -7 3 1101 947 101 22 0 chr3 67709399 67709538 -91890245 - B1_Mus1 SINE Alu -6 142 1 3 1101 359 350 43 30 chr3 67710064 67710294 -91889489 - MIRb SINE MIR -23 245 13 3 1101 314 294 50 72 chr3 67710416 67710629 -91889154 - MTE2a LTR MaLR -7 412 204 3 1101 236 307 56 22 chr3 67710618 67710708 -91889075 - MTE2a LTR MaLR -281 93 1 3 1101 3061 63 0 22 chr3 67710973 67711378 -91888405 - L1Md_F2 LINE L1 -12 6570 6175 3 1101 307 300 94 55 chr3 67711409 67711441 -91888342 - MLT1L LTR MaLR -308 302 277 3 1101 4061 171 16 27 chr3 67711441 67712203 -91887580 + Lx2B LINE L1 6216 6974 -26 3 1101 324 0 0 0 chr3 67712203 67712239 -91887544 + (TAA)n Simple_repeat Simple_repeat 3 38 0 3 1101 4061 171 16 27 chr3 67712239 67712265 -91887518 + Lx2B LINE L1 6975 6996 -4 3 1101 307 300 94 55 chr3 67712265 67712359 -91887424 - MLT1L LTR MaLR -334 276 171 3 1101 722 228 28 14 chr3 67712535 67712749 -91887034 - L1MA6 LINE L1 -54 6246 6030 3 1101 264 122 0 0 chr3 67713152 67713193 -91886590 + (GGA)n Simple_repeat Simple_repeat 2 42 0 3 1101 193 312 34 74 chr3 67713614 67713763 -91886020 - MIR SINE MIR -17 245 103 3 1101 1093 109 0 0 chr3 67713776 67713923 -91885860 + B1_Mus2 SINE Alu 1 147 0 3 1101 182 65 0 61 chr3 67714103 67714136 -91885647 + (TCC)n Simple_repeat Simple_repeat 2 32 0 3 1101 511 290 88 38 chr3 67714428 67715073 -91884710 + L1MD2 LINE L1 4973 5665 -694 3 1101 922 272 143 13 chr3 67715263 67715661 -91884122 + L1MD2 LINE L1 5905 6354 -5 3 1101 9520 83 16 6 chr3 67715657 67717028 -91882755 - Lx3_Mus LINE L1 -8 7001 5617 3 1101 292 347 73 16 chr3 67717337 67717460 -91882323 - MIR SINE MIR -72 190 61 3 1101 494 260 24 160 chr3 67718116 67718322 -91881461 + MTE2a LTR MaLR 1 178 -201 3 1101 359 356 30 5 chr3 67718535 67718738 -91881045 + L1MC4 LINE L1 7373 7580 -462 3 1101 189 171 0 0 chr3 67718796 67718831 -91880952 + GA-rich Low_complexity Low_complexity 4 38 0 3 1101 815 190 0 16 chr3 67718834 67718881 -91880902 + polypurine Low_complexity Low_complexity 2 47 0 3 1101 1179 117 0 0 chr3 67718881 67719061 -91880722 + (GA)n Simple_repeat Simple_repeat 1 180 0 3 1101 815 190 0 16 chr3 67719061 67719195 -91880588 + polypurine Low_complexity Low_complexity 48 180 0 3 1101 385 245 10 0 chr3 67719351 67719449 -91880334 + L1MC4 LINE L1 7786 7884 -158 3 1101 1651 295 63 39 chr3 67719736 67720384 -91879399 + Lx8 LINE L1 6328 6991 -482 3 1101 1382 274 29 52 chr3 67720571 67720952 -91878831 - MTEb LTR MaLR -2 377 6 3 1101 1200 266 26 31 chr3 67721713 67722094 -91877689 + MTEb LTR MaLR 1 379 0 3 1101 229 240 0 29 chr3 67723523 67723626 -91876157 + CT-rich Low_complexity Low_complexity 4 103 0 3 1101 1192 228 140 8 chr3 67724755 67725113 -91874670 + MTD LTR MaLR 1 405 -14 3 1101 599 341 164 27 chr3 67725920 67726737 -91873046 - L2 LINE L2 -339 3080 2152 3 1101 330 171 0 0 chr3 67726770 67726840 -91872943 + (CA)n Simple_repeat Simple_repeat 2 71 0 3 1101 498 33 0 0 chr3 67726840 67726900 -91872883 + (GA)n Simple_repeat Simple_repeat 2 61 0 3 1101 1177 69 0 0 chr3 67727805 67727949 -91871834 - L1_Mus1 LINE L1 -279 6288 6145 3 1101 2205 45 60 0 chr3 67727949 67728215 -91871568 + L1_Mus1 LINE L1 6286 6567 0 3 1101 203 0 0 36 chr3 67728489 67728517 -91871266 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 3 1101 274 289 33 11 chr3 67728623 67728714 -91871069 - MIRb SINE MIR -38 230 138 3 1101 276 312 135 36 chr3 67729143 67729336 -91870447 + MIRb SINE MIR 51 262 -6 3 1101 711 172 6 12 chr3 67729699 67729864 -91869919 + CT-rich Low_complexity Low_complexity 4 167 0 3 1101 258 32 0 0 chr3 67729965 67729996 -91869787 + (T)n Simple_repeat Simple_repeat 1 31 0 3 1101 9099 8 0 0 chr3 67730000 67730996 -91868787 - L1Md_A LINE L1 0 6582 5587 3 1101 1320 249 31 50 chr3 67731879 67732053 -91867730 + ORR1D1 LTR MaLR 1 179 -195 3 1101 272 91 23 0 chr3 67732053 67732097 -91867686 + (TG)n Simple_repeat Simple_repeat 2 46 0 3 1101 1320 249 31 50 chr3 67732097 67732303 -91867480 + ORR1D1 LTR MaLR 180 374 0 3 1101 1219 256 83 68 chr3 67732878 67733334 -91866449 + Lx6 LINE L1 6965 7427 -33 3 1101 241 316 51 34 chr3 67735945 67736063 -91863720 - MLT1J2 LTR MaLR -14 434 315 3 1101 391 309 13 45 chr3 67736444 67736600 -91863183 - MIR SINE MIR -97 165 15 3 1101 900 308 11 68 chr3 67736664 67736929 -91862854 - B4A SINE B4 0 292 43 3 1101 263 200 234 1 chr3 67736934 67737029 -91862754 - MTC LTR MaLR -9 410 278 3 1101 243 273 104 77 chr3 67737294 67737516 -91862267 + L4 LINE RTE 1695 1922 -107 3 1101 192 298 183 37 chr3 67739149 67739313 -91860470 + MIRb SINE MIR 65 252 -16 3 1101 258 136 0 0 chr3 67739933 67739977 -91859806 + (T)n Simple_repeat Simple_repeat 1 44 0 3 1101 234 81 0 0 chr3 67740620 67740657 -91859126 + (TG)n Simple_repeat Simple_repeat 1 37 0 3 1101 398 288 170 60 chr3 67740703 67740774 -91859009 - B4A SINE B4 -16 276 210 3 1101 180 0 0 0 chr3 67740774 67740794 -91858989 + (TTG)n Simple_repeat Simple_repeat 2 21 0 3 1101 398 288 170 60 chr3 67740794 67740940 -91858843 - B4A SINE B4 -83 209 35 3 1101 186 43 0 0 chr3 67740990 67741013 -91858770 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 3 1101 180 0 0 0 chr3 67741326 67741346 -91858437 + (CA)n Simple_repeat Simple_repeat 2 21 0 3 1101 286 280 59 29 chr3 67741616 67741752 -91858031 - L1MD2 LINE L1 -7 6352 6213 3 1101 281 26 0 26 chr3 67742118 67742157 -91857626 + (CCCCCT)n Simple_repeat Simple_repeat 3 40 0 3 1101 1104 85 0 0 chr3 67742157 67742310 -91857473 + (TTC)n Simple_repeat Simple_repeat 2 154 0 3 1101 595 275 29 7 chr3 67742311 67742450 -91857333 - B4A SINE B4 -83 209 68 3 1101 254 296 51 51 chr3 67742467 67742663 -91857120 - RMER17C LTR ERVK -51 359 164 3 1101 306 0 0 0 chr3 67742667 67742701 -91857082 + (GA)n Simple_repeat Simple_repeat 2 35 0 3 1101 246 242 75 15 chr3 67742832 67742899 -91856884 - B4A SINE B4 -221 71 1 3 1101 217 264 11 0 chr3 67743758 67743832 -91855951 + MIRb SINE MIR 99 179 -89 3 1101 256 329 74 49 chr3 67744037 67744200 -91855583 + LTR33 LTR ERVL 12 178 -337 3 1101 727 266 40 160 chr3 67744814 67745213 -91854570 - RLTR12B LTR ERVK -29 499 149 3 1101 361 269 13 0 chr3 67745272 67745350 -91854433 + ID SINE ID 1 79 -145 3 1101 1137 185 118 40 chr3 67745352 67745654 -91854129 - IAPEY3_LTR LTR ERVK -2 388 1 3 1101 364 291 101 16 chr3 67745654 67745775 -91854008 + ID_B1 SINE B4 73 204 -20 3 1101 180 0 0 0 chr3 67745783 67745803 -91853980 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 3 1101 1187 300 33 21 chr3 67746412 67746898 -91852885 + ORSL-2b DNA Tip100 1 492 -16 3 1101 254 302 169 73 chr3 67747040 67747176 -91852607 + B4A SINE B4 39 187 -105 3 1101 546 94 11 45 chr3 67747166 67747255 -91852528 - MTD LTR MaLR -331 88 3 3 1101 241 256 35 47 chr3 67747431 67747517 -91852266 - MLT1F2 LTR MaLR 0 560 476 3 1101 13641 49 7 1 chr3 67747523 67749929 -91849854 - L1Md_F2 LINE L1 -11 6571 4157 3 1101 471 351 34 95 chr3 67749930 67750257 -91849526 - MLT1E2 LTR MaLR -82 598 292 3 1101 313 363 29 0 chr3 67750309 67750411 -91849372 - MLT1E2 LTR MaLR -422 138 34 3 1101 392 267 77 32 chr3 67751854 67752009 -91847774 - MIR SINE MIR -97 165 4 3 1101 236 378 14 0 chr3 67752118 67752192 -91847591 - ID4_ SINE ID -6 77 3 3 1101 234 0 0 0 chr3 67752507 67752533 -91847250 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 3 1101 461 292 116 7 chr3 67752556 67752711 -91847072 - MLT1A0 LTR MaLR -107 258 87 3 1101 21 0 0 0 chr3 67753531 67753552 -91846231 + AT_rich Low_complexity Low_complexity 1 21 0 3 1101 268 244 8 73 chr3 67754499 67754623 -91845160 - Lx7 LINE L1 -16 7680 7565 3 1101 823 268 74 15 chr3 67754635 67754904 -91844879 - Lx7 LINE L1 -285 7411 7127 3 1101 904 269 59 36 chr3 67755541 67756020 -91843763 + Lx7 LINE L1 7083 7696 0 3 1101 709 288 92 43 chr3 67757154 67757524 -91842259 - MLT1A1 LTR MaLR -3 405 18 3 1101 208 281 144 11 chr3 67757555 67757645 -91842138 - MIR SINE MIR -72 136 35 3 1101 188 331 71 114 chr3 67757828 67758012 -91841771 - MIRc SINE MIR -74 194 19 3 1101 828 127 18 0 chr3 67758016 67758181 -91841602 + (TC)n Simple_repeat Simple_repeat 1 168 0 4 1101 23 0 0 0 chr3 67759248 67759271 -91840512 + AT_rich Low_complexity Low_complexity 1 23 0 4 1101 916 252 74 134 chr3 67760049 67760534 -91839249 + RLTR12B LTR ERVK 42 497 -31 4 1101 424 277 58 39 chr3 67761918 67762072 -91837711 + RSINE1 SINE B4 3 159 -6 4 1101 237 139 0 0 chr3 67762154 67762197 -91837586 + (CAAT)n Simple_repeat Simple_repeat 3 45 0 4 1101 523 271 14 35 chr3 67762203 67762348 -91837435 + B3A SINE B2 1 142 -53 4 1101 444 104 0 0 chr3 67762355 67762422 -91837361 + (CA)n Simple_repeat Simple_repeat 1 67 0 4 1102 1271 139 78 37 chr3 67764523 67764740 -91835043 + URR1A DNA MER1_type 1 226 0 4 1102 293 338 109 32 chr3 67765581 67765737 -91834046 + MIRb SINE MIR 24 191 -77 4 1102 188 292 80 51 chr3 67765732 67765869 -91833914 - L2a LINE L2 -4 3422 3282 4 1102 1118 315 78 15 chr3 67766204 67766681 -91833102 + Lx8 LINE L1 6934 7440 -33 4 1102 3510 89 11 18 chr3 67766722 67767178 -91832605 + Lx LINE L1 6196 6648 -6 4 1102 25 0 0 0 chr3 67767432 67767457 -91832326 + AT_rich Low_complexity Low_complexity 1 25 0 4 1102 204 97 0 0 chr3 67767615 67767646 -91832137 + (CA)n Simple_repeat Simple_repeat 2 32 0 4 1102 194 383 0 0 chr3 67767856 67767937 -91831846 - L2a LINE L2 -9 3417 3337 4 1102 234 174 0 0 chr3 67768539 67768585 -91831198 + CT-rich Low_complexity Low_complexity 1 46 0 4 1102 219 289 0 0 chr3 67770459 67770511 -91829272 + GA-rich Low_complexity Low_complexity 2 53 0 4 1102 309 147 13 39 chr3 67771079 67771157 -91828626 + CT-rich Low_complexity Low_complexity 3 78 0 4 1102 288 274 128 100 chr3 67771162 67771413 -91828370 - L1MC4a LINE L1 -1920 5962 5705 4 1102 10315 60 2 3 chr3 67772238 67774223 -91825560 - L1Md_F2 LINE L1 -3 6579 4597 4 1102 4107 107 1 19 chr3 67774216 67775312 -91824471 - L1Md_F2 LINE L1 -4176 1707 224 4 1102 1815 132 67 29 chr3 67775580 67775893 -91823890 - ORR1A2 LTR MaLR -2 325 1 4 1102 312 297 109 42 chr3 67776467 67776632 -91823151 - MIR SINE MIR -27 241 63 4 1102 638 242 23 0 chr3 67777130 67777258 -91822525 - B1F SINE Alu -9 140 10 4 1102 266 291 30 98 chr3 67777258 67777286 -91822497 + YREP_Mm Unknown Unknown 209 332 -1480 4 1102 25 31 0 0 chr3 67777359 67777391 -91822392 + AT_rich Low_complexity Low_complexity 1 32 0 4 1102 25 0 0 0 chr3 67777742 67777767 -91822016 + AT_rich Low_complexity Low_complexity 1 25 0 4 1102 371 88 29 0 chr3 67777768 67777836 -91821947 + (TATG)n Simple_repeat Simple_repeat 2 71 0 4 1102 1075 88 0 0 chr3 67777836 67777973 -91821810 - B1_Mus2 SINE Alu -10 137 1 4 1102 423 337 98 16 chr3 67780168 67780361 -91819422 - Tigger5 DNA MER2_type -2191 215 7 4 1102 396 0 0 0 chr3 67781163 67781207 -91818576 + (TA)n Simple_repeat Simple_repeat 2 45 0 4 1102 273 241 0 65 chr3 67781213 67781275 -91818508 + MER2 DNA MER2_type 14 71 -274 4 1102 683 260 114 0 chr3 67781275 67781521 -91818262 + B4A SINE B4 1 274 -18 4 1102 528 246 15 0 chr3 67781593 67781723 -91818060 + MER2 DNA MER2_type 93 224 -121 4 1102 484 281 40 24 chr3 67781719 67781843 -91817940 + ID_B1 SINE B4 7 132 -92 4 1102 374 282 33 25 chr3 67781899 67782019 -91817764 + MTE2b LTR MaLR 256 376 -3 4 1102 702 113 0 0 chr3 67782077 67782210 -91817573 + (CA)n Simple_repeat Simple_repeat 2 134 0 4 1102 384 22 0 0 chr3 67782210 67782254 -91817529 + (GA)n Simple_repeat Simple_repeat 2 46 0 4 1102 234 0 0 0 chr3 67783749 67783775 -91816008 + (T)n Simple_repeat Simple_repeat 1 26 0 4 1102 858 212 114 0 chr3 67784015 67784208 -91815575 + B3 SINE B2 2 216 0 4 1102 367 311 70 15 chr3 67784456 67784655 -91815128 - L1ME2 LINE L1 -283 5881 5672 4 1102 373 313 62 47 chr3 67784697 67784994 -91814789 - L1ME2 LINE L1 -2407 5588 5266 4 1102 381 235 52 52 chr3 67785168 67785361 -91814422 - MER33 DNA MER1_type -28 296 104 4 1102 2205 181 85 32 chr3 67785853 67786349 -91813434 + Lx5 LINE L1 6482 7003 -47 4 1102 23 54 0 0 chr3 67786352 67786389 -91813394 + AT_rich Low_complexity Low_complexity 1 37 0 4 1102 874 323 59 7 chr3 67786452 67786739 -91813044 - MLT1F1 LTR MaLR -265 304 3 4 1102 37 23 0 0 chr3 67787029 67787073 -91812710 + AT_rich Low_complexity Low_complexity 1 44 0 4 1102 382 286 45 8 chr3 67788802 67788936 -91810847 - B1F1 SINE Alu -9 140 2 4 1102 411 326 48 11 chr3 67789184 67789457 -91810326 - L1MC3 LINE L1 -25 7760 7478 4 1102 386 270 50 0 chr3 67790683 67790783 -91809000 - B3A SINE B2 -92 106 2 4 1102 628 348 69 43 chr3 67791463 67791809 -91807974 + ORR1E LTR MaLR 1 355 -4 4 1102 390 263 124 24 chr3 67791917 67792142 -91807641 + MIR SINE MIR 10 252 -10 4 1102 225 230 27 0 chr3 67793611 67793685 -91806098 + (TA)n Simple_repeat Simple_repeat 2 77 0 4 1102 440 383 73 50 chr3 67793759 67794061 -91805722 - LTR16A LTR ERVL -106 345 37 4 1102 2278 139 3 6 chr3 67794172 67794511 -91805272 + Lx4A LINE L1 6714 7051 -7 4 1102 30 0 0 0 chr3 67794583 67794613 -91805170 + AT_rich Low_complexity Low_complexity 1 30 0 4 1102 614 338 22 32 chr3 67795298 67795576 -91804207 - ERVL-E-int LTR ERVL -1337 4330 4056 4 1102 395 254 50 8 chr3 67795705 67795824 -91803959 - HERV16-int LTR ERVL -3127 1869 1746 4 1102 381 22 0 0 chr3 67795849 67795895 -91803888 + (CA)n Simple_repeat Simple_repeat 2 47 0 4 1102 999 45 14 43 chr3 67796725 67796865 -91802918 - B1_Mm SINE Alu -10 137 2 4 1102 259 294 92 46 chr3 67796892 67797088 -91802695 - HERV16-int LTR ERVL -4377 619 415 4 1102 400 403 42 38 chr3 67797694 67797934 -91801849 - LTR16A LTR ERVL -210 241 1 4 1102 331 310 111 1 chr3 67798226 67798368 -91801415 - MIR SINE MIR -108 168 6 4 1102 729 264 6 11 chr3 67798535 67798711 -91801072 + MER5B DNA MER1_type 4 178 0 4 1102 349 387 0 7 chr3 67798874 67799017 -91800766 - MIR SINE MIR -91 171 30 4 1102 265 266 87 4 chr3 67800967 67801052 -91798731 + MLT1J1 LTR MaLR 25 110 -338 4 1102 595 294 82 12 chr3 67801836 67802091 -91797692 + B4A SINE B4 1 273 -19 4 1102 240 35 0 0 chr3 67802147 67802176 -91797607 + (CA)n Simple_repeat Simple_repeat 2 30 0 4 1102 915 145 6 62 chr3 67802214 67802391 -91797392 - ORR1B2 LTR MaLR -200 167 1 4 1102 36 53 0 0 chr3 67802467 67802524 -91797259 + AT_rich Low_complexity Low_complexity 1 57 0 4 1102 1495 49 0 0 chr3 67802611 67802796 -91796987 + L1Md_T LINE L1 6398 6582 0 4 1102 650 289 44 20 chr3 67802851 67803206 -91796577 - L1MA4 LINE L1 -185 5986 5630 4 1102 71 77 0 0 chr3 67803231 67803386 -91796397 + AT_rich Low_complexity Low_complexity 1 155 0 4 1102 566 322 41 8 chr3 67803558 67803824 -91795959 - Lx8 LINE L1 -274 7199 6925 4 1102 1873 45 4 0 chr3 67803821 67804066 -91795717 - L1_Mus2 LINE L1 -627 5939 5694 4 1102 3332 91 38 0 chr3 67804066 67804518 -91795265 + L1_Mus2 LINE L1 6095 6563 -3 4 1102 501 239 57 21 chr3 67804539 67804680 -91795103 - Lx8 LINE L1 -548 6925 6780 4 1102 1109 276 24 100 chr3 67804830 67805240 -91794543 + MTEa LTR MaLR 1 379 0 4 1102 2536 50 0 0 chr3 67805308 67805626 -91794157 - L1Md_F2 LINE L1 0 6582 6265 4 1102 279 194 9 19 chr3 67805926 67806031 -91793752 + (TG)n Simple_repeat Simple_repeat 1 104 0 4 1102 225 132 0 0 chr3 67806284 67806322 -91793461 + (TCC)n Simple_repeat Simple_repeat 2 39 0 4 1102 501 17 0 0 chr3 67807303 67807361 -91792422 + (TG)n Simple_repeat Simple_repeat 1 58 0 4 1102 386 336 128 50 chr3 67807956 67808117 -91791666 - MLT1H1 LTR MaLR -319 236 68 4 1102 461 17 17 0 chr3 67808117 67808175 -91791608 + (TA)n Simple_repeat Simple_repeat 2 60 0 4 1102 386 336 128 50 chr3 67808175 67808232 -91791551 - MLT1H1 LTR MaLR -488 67 1 4 1102 299 108 22 14 chr3 67809490 67809548 -91790235 - MTD LTR MaLR -17 402 322 4 1102 743 326 75 55 chr3 67809548 67810027 -91789756 + MT2A LTR ERVL 1 491 -42 4 1102 390 42 0 0 chr3 67810027 67810075 -91789708 + (CA)n Simple_repeat Simple_repeat 1 48 0 4 1102 743 326 75 55 chr3 67810075 67810118 -91789665 + MT2A LTR ERVL 492 533 0 4 1102 659 303 59 63 chr3 67810161 67810415 -91789368 - MTD LTR MaLR -166 253 1 4 1102 820 322 111 89 chr3 67812109 67812949 -91786834 + MER97a DNA MER1_type? 12 869 -25 4 1102 219 357 143 21 chr3 67813941 67814130 -91785653 + MIR SINE MIR 18 229 -33 4 1102 2860 254 67 13 chr3 67814354 67815201 -91784582 - RCHARR1 DNA MER1_type -74 900 8 4 1102 1055 302 108 34 chr3 67815211 67815754 -91784029 + L1MA4 LINE L1 5287 5937 -363 4 1102 414 0 0 0 chr3 67815754 67815800 -91783983 + (TG)n Simple_repeat Simple_repeat 2 47 0 4 1102 925 302 108 34 chr3 67815800 67815877 -91783906 + L1MA4 LINE L1 5938 6011 -289 4 1102 1359 298 36 10 chr3 67816247 67816664 -91783119 - RMER20A LTR ERVK -38 478 51 4 1102 2424 174 32 78 chr3 67816810 67817334 -91782449 + RLTR16 LTR ERVK 6 505 0 4 1102 728 305 30 30 chr3 67818923 67819187 -91780596 - LTR37A LTR ERV1 -162 264 1 4 1102 384 40 0 0 chr3 67819415 67819465 -91780318 + (TG)n Simple_repeat Simple_repeat 2 51 0 4 1102 675 272 105 30 chr3 67820942 67821276 -91778507 - ORR1E LTR MaLR 0 359 1 4 1102 540 308 234 3 chr3 67822262 67822574 -91777209 - MLT1D LTR MaLR -2 503 120 4 1102 192 77 0 0 chr3 67822996 67823022 -91776761 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 4 1102 607 311 92 51 chr3 67823696 67823988 -91775795 + MLT1B LTR MaLR 46 349 -41 4 1102 396 0 0 0 chr3 67824166 67824210 -91775573 + (TC)n Simple_repeat Simple_repeat 2 45 0 4 1102 378 61 0 0 chr3 67824210 67824258 -91775525 + (TG)n Simple_repeat Simple_repeat 2 50 0 4 1102 1846 78 0 4 chr3 67824320 67824566 -91775217 - L1_Mus1 LINE L1 0 6567 6323 4 1102 293 0 0 0 chr3 67824567 67824603 -91775180 + L1_Mm LINE L1 4025 4060 -1823 4 1102 378 356 21 70 chr3 67824744 67824931 -91774852 - B4A SINE B4 -8 284 107 4 1102 504 0 0 0 chr3 67825242 67825298 -91774485 + (TAGA)n Simple_repeat Simple_repeat 2 57 0 5 1102 1267 253 89 31 chr3 67825470 67826437 -91773346 - L1M2 LINE L1 -483 5817 4786 5 1102 269 312 60 27 chr3 67827356 67827528 -91772255 + L1MC5 LINE L1 6718 6975 -1067 5 1102 234 0 0 0 chr3 67827554 67827580 -91772203 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 5 1102 915 249 19 0 chr3 67827580 67827785 -91771998 - ID_B1 SINE B4 -11 213 5 5 1102 788 314 67 25 chr3 67828391 67828868 -91770915 + L1MD2 LINE L1 5494 5990 -369 5 1102 5397 39 9 0 chr3 67829136 67829782 -91770001 - L1Md_T LINE L1 -1 6581 5930 5 1102 803 304 116 70 chr3 67829813 67830298 -91769485 - MER21B LTR ERV1 -109 754 248 5 1102 308 333 111 48 chr3 67830313 67830392 -91769391 - MER21B LTR ERV1 -706 157 76 5 1102 2755 75 28 23 chr3 67830392 67830790 -91768993 + MTB LTR MaLR 1 400 0 5 1102 308 333 111 48 chr3 67830790 67830836 -91768947 - MER21B LTR ERV1 -788 75 24 5 1102 13654 108 10 47 chr3 67831184 67834168 -91765615 - L1_Mus3 LINE L1 -4 6634 3703 5 1102 491 223 87 0 chr3 67834310 67834413 -91765370 + ID_B1 SINE B4 65 176 -48 5 1102 483 18 0 0 chr3 67835730 67835786 -91763997 + (CA)n Simple_repeat Simple_repeat 2 57 0 5 1102 553 243 56 49 chr3 67837170 67837313 -91762470 - B1_Mur1 SINE Alu -5 144 1 5 1102 2999 52 3 0 chr3 67837548 67837910 -91761873 - L1_Mus1 LINE L1 -141 5742 5380 5 1102 6568 87 3 0 chr3 67837903 67838758 -91761025 + L1_Mus1 LINE L1 5709 6566 -1 5 1102 616 297 19 0 chr3 67838828 67838983 -91760800 - RSINE1 SINE B4 -6 159 2 5 1102 378 0 0 0 chr3 67840635 67840677 -91759106 + (CA)n Simple_repeat Simple_repeat 2 43 0 5 1102 338 262 58 0 chr3 67841650 67841753 -91758030 + GA-rich Low_complexity Low_complexity 5 113 0 5 1102 249 328 41 16 chr3 67843890 67844011 -91755772 - L2 LINE L2 -2806 613 490 5 1102 304 326 33 0 chr3 67844034 67844126 -91755657 + L2 LINE L2 390 484 -2935 5 1102 220 387 45 13 chr3 67844113 67844270 -91755513 - L2 LINE L2 -2933 486 325 5 1102 333 0 0 0 chr3 67844654 67844691 -91755092 + (TG)n Simple_repeat Simple_repeat 1 37 0 5 1102 270 0 0 0 chr3 67846349 67846379 -91753404 + (T)n Simple_repeat Simple_repeat 1 30 0 5 1102 1329 20 0 0 chr3 67846379 67846525 -91753258 - B1_Mm SINE Alu 0 147 2 5 1102 1075 272 96 19 chr3 67846965 67847433 -91752350 + L1MA6 LINE L1 5564 6067 -233 5 1102 341 345 38 59 chr3 67847437 67847674 -91752109 - B4A SINE B4 -59 233 2 5 1102 396 0 0 0 chr3 67847848 67847892 -91751891 + (GA)n Simple_repeat Simple_repeat 2 45 0 5 1102 195 263 184 0 chr3 67847911 67847987 -91751796 + MER5A DNA MER1_type 74 163 -26 5 1102 375 121 0 0 chr3 67848942 67849000 -91750783 + (CA)n Simple_repeat Simple_repeat 1 58 0 5 1102 477 172 0 0 chr3 67849593 67849686 -91750097 + (CA)n Simple_repeat Simple_repeat 1 93 0 5 1102 987 206 86 78 chr3 67850324 67850593 -91749190 - MTD LTR MaLR -1 418 148 5 1102 25 0 0 0 chr3 67851016 67851041 -91748742 + AT_rich Low_complexity Low_complexity 1 25 0 5 1102 351 0 0 0 chr3 67852887 67852926 -91746857 + (CA)n Simple_repeat Simple_repeat 2 40 0 5 1102 1032 106 0 0 chr3 67852926 67853104 -91746679 + (GA)n Simple_repeat Simple_repeat 2 180 0 5 1102 279 157 0 0 chr3 67853110 67853161 -91746622 + GA-rich Low_complexity Low_complexity 3 53 0 5 1102 219 125 0 0 chr3 67854067 67854107 -91745676 + (TG)n Simple_repeat Simple_repeat 1 40 0 5 1102 1481 218 106 3 chr3 67854762 67855130 -91744653 + MTD LTR MaLR 1 406 -13 5 1102 194 342 40 14 chr3 67855181 67855255 -91744528 + MIRb SINE MIR 27 102 -166 5 1102 216 0 0 0 chr3 67855304 67855328 -91744455 + (TTA)n Simple_repeat Simple_repeat 1 24 0 5 1102 2676 88 3 6 chr3 67855328 67855682 -91744101 - L1_Mus4 LINE L1 -16 6620 6268 5 1102 251 340 66 41 chr3 67855892 67856088 -91743695 - MIRb SINE MIR -1 267 67 5 1102 847 179 49 21 chr3 67858261 67858404 -91741379 + B1_Mus2 SINE Alu 1 147 0 5 1102 372 71 0 0 chr3 67858428 67858484 -91741299 + (A)n Simple_repeat Simple_repeat 1 56 0 5 1102 206 105 53 0 chr3 67859998 67860036 -91739747 + G-rich Low_complexity Low_complexity 3 42 0 5 1102 25 31 0 0 chr3 67860142 67860174 -91739609 + AT_rich Low_complexity Low_complexity 1 32 0 5 1102 267 31 0 0 chr3 67860295 67860327 -91739456 + (TTG)n Simple_repeat Simple_repeat 2 33 0 5 1102 865 143 274 0 chr3 67860675 67860850 -91738933 + URR1B DNA MER1_type 3 225 0 5 1102 227 167 203 62 chr3 67861526 67861590 -91738193 - ID4 SINE ID -8 75 3 5 1102 280 59 19 19 chr3 67861606 67861658 -91738125 + (CAAA)n Simple_repeat Simple_repeat 2 53 0 5 1102 372 328 112 8 chr3 67862425 67862618 -91737165 - MIRb SINE MIR -19 249 39 5 1102 332 265 127 60 chr3 67863277 67863502 -91736281 + MIRb SINE MIR 2 252 -16 5 1102 1379 247 91 14 chr3 67864882 67865313 -91734470 + Lx9 LINE L1 7101 7564 -80 5 1102 474 172 11 65 chr3 67865330 67865423 -91734360 + B3 SINE B2 123 210 -6 5 1102 21 0 0 0 chr3 67865481 67865502 -91734281 + AT_rich Low_complexity Low_complexity 1 21 0 5 1102 414 0 0 0 chr3 67866695 67866741 -91733042 + (TG)n Simple_repeat Simple_repeat 1 46 0 5 1102 235 275 134 22 chr3 67867343 67867477 -91732306 - Lx8 LINE L1 -10 7463 7315 5 1102 243 88 0 0 chr3 67870806 67870840 -91728943 + (T)n Simple_repeat Simple_repeat 1 34 0 5 1102 315 0 0 0 chr3 67872019 67872054 -91727729 + (TC)n Simple_repeat Simple_repeat 1 35 0 5 1102 187 275 0 0 chr3 67872858 67872898 -91726885 + MIR3 SINE MIR 151 190 -18 5 1102 723 209 22 0 chr3 67872915 67873054 -91726729 + B3A SINE B2 10 151 -47 5 1102 426 20 0 0 chr3 67873064 67873115 -91726668 + (CA)n Simple_repeat Simple_repeat 1 51 0 5 1102 423 0 0 0 chr3 67873816 67873863 -91725920 + (TG)n Simple_repeat Simple_repeat 2 48 0 5 1102 824 206 20 0 chr3 67873864 67874010 -91725773 - B3A SINE B2 -48 150 2 5 1102 199 250 0 0 chr3 67874046 67874086 -91725697 - MIR3 SINE MIR -18 190 151 5 1102 185 242 58 43 chr3 67874166 67874235 -91725548 - L3 LINE CR1 -974 3515 3446 5 1102 283 352 66 70 chr3 67874315 67874587 -91725196 - B4 SINE B4 -20 272 2 5 1102 331 376 39 45 chr3 67874616 67874928 -91724855 - MLT1J1 LTR MaLR -99 345 36 5 1102 288 0 0 0 chr3 67875363 67875395 -91724388 + (CA)n Simple_repeat Simple_repeat 1 32 0 5 1102 1151 258 77 34 chr3 67876714 67877092 -91722691 - Lx8 LINE L1 -72 7401 7008 5 1102 28 0 0 0 chr3 67878349 67878377 -91721406 + AT_rich Low_complexity Low_complexity 1 28 0 5 1102 354 317 201 0 chr3 67878783 67878982 -91720801 - MIR SINE MIR -16 246 8 5 1102 27 0 0 0 chr3 67879010 67879037 -91720746 + AT_rich Low_complexity Low_complexity 1 27 0 5 1102 1495 57 0 6 chr3 67880154 67880329 -91719454 - B2_Mm1t SINE B2 -19 174 1 5 1102 272 276 0 0 chr3 67882055 67882113 -91717670 + G-rich Low_complexity Low_complexity 6 63 0 5 1102 277 263 13 13 chr3 67882119 67882196 -91717587 - B3A SINE B2 -118 80 4 5 1102 339 25 0 0 chr3 67882650 67882690 -91717093 + (TG)n Simple_repeat Simple_repeat 1 40 0 5 1102 697 278 82 16 chr3 67882769 67882963 -91716820 - B3 SINE B2 0 216 10 5 1102 568 266 92 50 chr3 67882976 67883237 -91716546 - L1MA8 LINE L1 -22 6290 6019 5 1102 3039 51 8 20 chr3 67883243 67883643 -91716140 + MTB LTR MaLR 1 395 -5 5 1102 1047 286 80 18 chr3 67883643 67884092 -91715691 - L1MA8 LINE L1 -279 6012 5536 5 1102 487 350 92 56 chr3 67884496 67884853 -91714930 + ORR1D2 LTR MaLR 1 370 0 5 1102 809 305 70 12 chr3 67884930 67885189 -91714594 + MLT1C LTR MaLR 190 463 -4 5 1102 295 305 102 0 chr3 67885360 67885488 -91714295 - MIR SINE MIR -104 158 18 5 1102 303 268 0 0 chr3 67886539 67886707 -91713076 + (TG)n Simple_repeat Simple_repeat 1 168 0 5 1102 243 259 0 0 chr3 67886763 67886848 -91712935 + (TG)n Simple_repeat Simple_repeat 2 86 0 5 1102 722 189 0 8 chr3 67887557 67887685 -91712098 - B1_Mus2 SINE Alu 0 147 21 5 1102 207 289 25 62 chr3 67888479 67888560 -91711223 - MIR SINE MIR -9 253 176 5 1102 1073 101 0 0 chr3 67889586 67889744 -91710039 + L1_Mus2 LINE L1 6408 6565 -1 5 1102 2650 199 45 12 chr3 67890548 67891107 -91708676 - RLTR20B3 LTR ERVK 0 577 1 5 1102 519 304 19 82 chr3 67891325 67891413 -91708370 + RMER30 DNA MER1_type 7 94 -108 5 1102 1035 134 0 0 chr3 67891413 67891487 -91708296 + (CA)n Simple_repeat Simple_repeat 1 75 -185 5 1102 1035 134 0 0 chr3 67891493 67891673 -91708110 + (CA)n Simple_repeat Simple_repeat 76 260 0 5 1102 519 304 19 82 chr3 67891673 67891785 -91707998 + RMER30 DNA MER1_type 95 201 -1 5 1102 267 312 54 27 chr3 67892411 67892523 -91707260 - MER63B DNA AcHobo 0 436 322 5 1102 1268 213 255 19 chr3 67892554 67892985 -91706798 + MT2A LTR ERVL 1 533 0 5 1102 221 241 38 0 chr3 67894155 67894234 -91705549 + (TA)n Simple_repeat Simple_repeat 1 82 0 5 1102 2732 184 14 21 chr3 67894604 67895115 -91704668 + Lx2A1 LINE L1 6491 6997 -11 5 1103 418 338 191 34 chr3 67898240 67898623 -91701160 - MLT1J2 LTR MaLR -2 446 4 5 1103 231 318 44 22 chr3 67898730 67898820 -91700963 - MLT1J2-int LTR MaLR -198 1211 1120 5 1103 295 357 32 18 chr3 67899576 67899861 -91699922 - L1MD3 LINE L1 -158 7837 7549 5 1103 1010 268 30 41 chr3 67901241 67901580 -91698203 + MLT1A0 LTR MaLR 6 340 -25 5 1103 191 140 20 0 chr3 67901582 67901632 -91698151 + (TTTG)n Simple_repeat Simple_repeat 2 52 0 5 1103 1255 81 37 26 chr3 67901636 67901827 -91697956 - B2_Mm2 SINE B2 -2 193 1 5 1103 270 103 0 0 chr3 67901828 67901867 -91697916 + MLT1A0 LTR MaLR 323 361 -4 5 1103 321 273 152 18 chr3 67902401 67902513 -91697270 + B4A SINE B4 166 292 0 5 1103 546 208 0 0 chr3 67902541 67902695 -91697088 + (CA)n Simple_repeat Simple_repeat 1 154 0 5 1103 233 300 0 12 chr3 67902697 67902778 -91697005 + (CATA)n Simple_repeat Simple_repeat 1 80 0 5 1103 1273 192 95 34 chr3 67903331 67903627 -91696156 - RLTR46 LTR ERVK -6 314 1 5 1103 781 172 13 33 chr3 67904051 67904201 -91695582 - B1_Mur3 SINE Alu -2 147 1 6 1103 448 361 44 12 chr3 67904339 67904499 -91695284 - RSINE1 SINE B4 0 165 1 6 1103 730 277 106 5 chr3 67904605 67904794 -91694989 + ID_B1 SINE B4 12 219 -5 6 1103 23 0 0 0 chr3 67904920 67904943 -91694840 + AT_rich Low_complexity Low_complexity 1 23 0 6 1103 828 273 186 19 chr3 67905135 67905613 -91694170 - MER89 LTR ERV1 0 559 2 6 1103 564 103 28 0 chr3 67905671 67905778 -91694005 + (TCTA)n Simple_repeat Simple_repeat 1 110 0 6 1103 327 391 13 0 chr3 67907286 67907442 -91692341 - MIR SINE MIR -18 244 87 6 1103 2030 238 68 2 chr3 67907592 67908134 -91691649 - Lx6 LINE L1 -105 7355 6778 6 1103 292 294 83 8 chr3 67909961 67910081 -91689702 - MER3 DNA MER1_type -76 133 5 6 1103 1239 45 0 0 chr3 67911552 67911706 -91688077 + (TTTC)n Simple_repeat Simple_repeat 3 156 0 6 1103 9061 70 0 5 chr3 67911708 67912981 -91686802 + L1_Mm LINE L1 3688 4954 -929 6 1103 252 0 0 0 chr3 67914674 67914702 -91685081 + (CA)n Simple_repeat Simple_repeat 2 29 0 6 1103 332 312 158 32 chr3 67915760 67916197 -91683586 - L1ME1 LINE L1 -235 5944 5453 6 1103 331 352 66 22 chr3 67916383 67916566 -91683217 + Charlie24 DNA MER1_type 149 339 -2111 6 1103 942 304 7 24 chr3 67916584 67916881 -91682902 + B4 SINE B4 1 292 0 6 1103 616 163 8 8 chr3 67916881 67917011 -91682772 + (CA)n Simple_repeat Simple_repeat 1 130 0 6 1103 274 302 460 18 chr3 67917119 67917349 -91682434 - L2a LINE L2 -10 3416 3086 6 1103 353 307 8 58 chr3 67917545 67917666 -91682117 - L2a LINE L2 -637 2782 2668 6 1103 691 313 133 48 chr3 67917738 67918279 -91681504 + Charlie24 DNA MER1_type 553 1139 -1311 6 1103 2746 15 95 6 chr3 67918378 67918715 -91681068 + IAPLTR1_Mm LTR ERVK 1 367 0 6 1103 6040 97 143 45 chr3 67918715 67919905 -91679878 + IAPEz-int LTR ERVK 8 1313 -5168 6 1103 27405 23 1 2 chr3 67919904 67923181 -91676602 + IAPEz-int LTR ERVK 3210 6481 0 6 1103 2746 15 95 6 chr3 67923181 67923518 -91676265 + IAPLTR1_Mm LTR ERVK 1 367 0 6 1103 742 298 139 32 chr3 67923964 67923994 -91675789 + Charlie2b DNA MER1_type 1776 1802 -980 6 1103 2426 175 37 0 chr3 67923994 67924400 -91675383 + MTC LTR MaLR 1 421 0 6 1103 742 298 139 32 chr3 67924400 67924958 -91674825 + Charlie2b DNA MER1_type 1803 2427 -355 6 1103 280 279 37 85 chr3 67926122 67926310 -91673473 + Charlie2b DNA MER1_type 2514 2692 -90 6 1103 821 249 44 102 chr3 67926326 67926532 -91673251 + B3A SINE B2 2 195 0 6 1103 21 71 0 0 chr3 67926923 67926965 -91672818 + AT_rich Low_complexity Low_complexity 1 42 0 6 1103 7381 76 20 3 chr3 67926972 67928271 -91671512 - L1_Mus3 LINE L1 0 6638 5319 6 1103 1299 174 0 9 chr3 67928406 67928632 -91671151 - URR1B DNA MER1_type 0 225 2 6 1103 1241 106 11 0 chr3 67928632 67928812 -91670971 + B2_Mm2 SINE B2 3 184 -11 6 1103 336 314 71 16 chr3 67928819 67928945 -91670838 + B3 SINE B2 27 159 -57 6 1103 215 31 31 0 chr3 67929298 67929330 -91670453 + (TC)n Simple_repeat Simple_repeat 2 34 0 6 1103 236 306 0 0 chr3 67929331 67929393 -91670390 + (CA)n Simple_repeat Simple_repeat 2 63 0 6 1103 339 314 11 16 chr3 67929568 67929744 -91670039 + B4A SINE B4 7 215 -77 6 1103 1176 45 0 33 chr3 67929744 67929926 -91669857 + (GAAA)n Simple_repeat Simple_repeat 3 178 0 6 1103 312 349 0 23 chr3 67929926 67929958 -91669825 + B4A SINE B4 216 246 -46 6 1103 192 152 0 0 chr3 67929959 67929992 -91669791 + GA-rich Low_complexity Low_complexity 4 36 0 6 1103 237 222 0 0 chr3 67930080 67930125 -91669658 + (CA)n Simple_repeat Simple_repeat 1 45 0 6 1103 1314 114 13 18 chr3 67932306 67932530 -91667253 - Lx2 LINE L1 0 6997 6775 6 1103 2753 107 0 2 chr3 67932528 67932932 -91666851 - Lx2 LINE L1 -352 6645 6243 6 1103 237 186 0 0 chr3 67932928 67932971 -91666812 + L1_Mm LINE L1 5562 5604 -279 6 1103 263 310 76 66 chr3 67933968 67934179 -91665604 + MIRb SINE MIR 40 252 -16 6 1103 667 282 13 0 chr3 67935440 67935589 -91664194 - B3A SINE B2 -47 151 1 6 1103 242 278 14 14 chr3 67935951 67936024 -91663759 + ID4_ SINE ID 1 73 -10 6 1103 468 0 0 0 chr3 67936026 67936078 -91663705 + (CA)n Simple_repeat Simple_repeat 2 53 0 6 1103 351 317 49 12 chr3 67936788 67936951 -91662832 - MIRc SINE MIR -97 171 3 6 1103 285 302 38 84 chr3 67937483 67937636 -91662147 + PB1D10 SINE Alu 7 147 -2 6 1103 315 0 0 0 chr3 67937705 67937740 -91662043 + (CA)n Simple_repeat Simple_repeat 2 36 0 6 1103 332 286 133 20 chr3 67937973 67938169 -91661614 + MER113A DNA MER1_type 67 284 -30 6 1103 868 59 26 13 chr3 67938590 67938744 -91661039 + (TCTA)n Simple_repeat Simple_repeat 3 158 0 6 1103 2098 193 38 29 chr3 67940959 67941267 -91658516 - MTC LTR MaLR 0 421 107 6 1103 808 177 31 0 chr3 67941267 67941397 -91658386 + B1_Mur4 SINE Alu 3 136 -14 6 1103 378 0 0 0 chr3 67941400 67941442 -91658341 + (CATA)n Simple_repeat Simple_repeat 2 43 0 6 1103 2098 193 38 29 chr3 67941442 67941546 -91658237 - MTC LTR MaLR -315 106 1 6 1103 587 263 152 78 chr3 67941546 67941777 -91658006 + B4 SINE B4 37 284 -8 6 1103 213 317 0 0 chr3 67941796 67941856 -91657927 + (CA)n Simple_repeat Simple_repeat 1 60 0 6 1103 207 0 0 0 chr3 67942702 67942725 -91657058 + (CAA)n Simple_repeat Simple_repeat 2 24 0 6 1103 378 107 0 0 chr3 67943082 67943138 -91656645 + (TTG)n Simple_repeat Simple_repeat 1 56 0 6 1103 414 0 0 0 chr3 67944006 67944052 -91655731 + (CA)n Simple_repeat Simple_repeat 2 47 0 6 1103 256 208 93 99 chr3 67945478 67945590 -91654193 + MIRc SINE MIR 56 164 -104 6 1103 299 388 8 23 chr3 67946321 67946585 -91653198 - L1ME1 LINE L1 -28 6151 5892 6 1103 555 349 94 25 chr3 67946995 67947356 -91652427 - L2a LINE L2 -2 3424 3039 6 1103 407 304 136 53 chr3 67947374 67947432 -91652351 - L2a LINE L2 -433 2986 2929 6 1103 2363 69 0 72 chr3 67947432 67947778 -91652005 + ORR1A2 LTR MaLR 5 325 -2 6 1103 407 304 136 53 chr3 67947778 67948042 -91651741 - L2a LINE L2 -491 2928 2637 6 1103 388 266 0 0 chr3 67948112 67948191 -91651592 + PB1 SINE Alu 19 97 -30 6 1103 1177 55 7 0 chr3 67948219 67948365 -91651418 + B1_Mus2 SINE Alu 1 147 0 6 1103 671 238 8 8 chr3 67948489 67948612 -91651171 - RSINE1 SINE B4 -31 134 12 6 1103 450 0 0 0 chr3 67948613 67948663 -91651120 + (TG)n Simple_repeat Simple_repeat 2 51 0 6 1103 513 273 132 15 chr3 67948675 67948872 -91650911 - ID_B1 SINE B4 -3 221 2 6 1103 205 351 228 29 chr3 67948890 67949271 -91650512 - L2a LINE L2 -1007 2412 1956 6 1103 216 0 0 0 chr3 67949757 67949781 -91650002 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 6 1103 415 338 63 40 chr3 67953209 67953431 -91646352 + ORR1E LTR MaLR 12 238 -121 6 1103 369 278 65 40 chr3 67953634 67953780 -91646003 + ORR1E LTR MaLR 206 376 -3 6 1103 587 298 65 48 chr3 67954263 67954619 -91645164 - Lx9 LINE L1 -314 7330 6969 6 1103 226 262 32 16 chr3 67956580 67956642 -91643141 + MIR SINE MIR 75 137 -125 6 1103 486 360 20 0 chr3 67957104 67957257 -91642526 + MLT2B2 LTR ERVL 168 323 -192 6 1103 224 243 40 45 chr3 67957358 67957535 -91642248 + (TCTA)n Simple_repeat Simple_repeat 2 177 0 6 1103 196 337 33 11 chr3 67957580 67957670 -91642113 + L2a LINE L2 3278 3369 -57 6 1103 213 39 0 0 chr3 67958669 67958695 -91641088 + (TTCA)n Simple_repeat Simple_repeat 4 29 0 6 1103 332 314 50 36 chr3 67958709 67958848 -91640935 - B1F1 SINE Alu -8 141 1 6 1103 239 185 82 61 chr3 67959021 67959119 -91640664 + MER58B DNA MER1_type 80 179 -162 6 1103 318 268 25 25 chr3 67959550 67959711 -91640072 - L1MA9 LINE L1 -31 6260 6100 6 1103 754 302 34 7 chr3 67959870 67960202 -91639581 - L1MA9 LINE L1 -341 5950 5599 6 1103 410 273 10 10 chr3 67960230 67960330 -91639453 + ID_B1 SINE B4 92 191 -33 6 1103 341 305 38 0 chr3 67960240 67960345 -91639438 + B1F SINE Alu 20 128 -21 6 1103 574 293 73 42 chr3 67960925 67961238 -91638545 + MER33 DNA MER1_type 2 324 0 6 1103 477 105 0 0 chr3 67963161 67963247 -91636536 + (TG)n Simple_repeat Simple_repeat 2 87 0 6 1103 354 260 195 5 chr3 67963250 67963455 -91636328 - Lx8 LINE L1 -9 7464 7221 6 1103 186 242 133 71 chr3 67964022 67964120 -91635663 - MIRm SINE MIR -149 127 24 6 1103 274 341 120 33 chr3 67964734 67965123 -91634660 + L2a LINE L2 2712 3158 -268 6 1103 1686 185 88 0 chr3 67965180 67965510 -91634273 - ORR1B1 LTR MaLR -35 359 1 6 1103 228 307 124 58 chr3 67965537 67965658 -91634125 + L2a LINE L2 3285 3413 -13 6 1103 31586 71 3 23 chr3 67966263 67971015 -91628768 + L1Md_F2 LINE L1 631 5303 -580 6 1103 1633 48 29 0 chr3 67971015 67971224 -91628559 + L1Md_F3 LINE L1 6356 6570 -14 6 1103 31586 61 1 16 chr3 67971224 67971530 -91628253 + L1Md_F2 LINE L1 5304 5586 -297 6 1103 7578 62 19 4 chr3 67971530 67972511 -91627272 + L1Md_F2 LINE L1 5587 6582 0 6 1103 420 173 136 189 chr3 67972580 67972844 -91626939 + Lx7 LINE L1 7447 7696 0 6 1103 957 131 23 0 chr3 67973490 67973665 -91626118 + GA-rich Low_complexity Low_complexity 1 179 0 6 1103 258 312 0 15 chr3 67973996 67974061 -91625722 + L2b LINE L2 3312 3375 0 6 1103 459 116 44 9 chr3 67975202 67975315 -91624468 + (TA)n Simple_repeat Simple_repeat 1 117 0 6 1103 326 348 64 68 chr3 67975368 67975587 -91624196 - MIR SINE MIR -26 236 19 6 1103 305 156 31 72 chr3 67975736 67975833 -91623950 + (TTAAA)n Simple_repeat Simple_repeat 3 95 0 6 1103 227 345 126 24 chr3 67975845 67976100 -91623683 - Charlie20a DNA Charlie -40 767 487 6 1103 270 0 0 0 chr3 67976876 67976906 -91622877 + (TCTG)n Simple_repeat Simple_repeat 1 30 0 6 1103 244 357 20 40 chr3 67977681 67977830 -91621953 - B1F1 SINE Alu -1 148 3 6 1103 348 24 0 0 chr3 67977914 67977955 -91621828 + (TTTA)n Simple_repeat Simple_repeat 2 42 0 6 1103 479 219 98 58 chr3 67978751 67978925 -91620858 + B3A SINE B2 2 182 -16 6 1103 42 47 0 34 chr3 67979643 67979732 -91620051 + AT_rich Low_complexity Low_complexity 1 86 0 6 1103 269 298 69 9 chr3 67980298 67980456 -91619327 + MIRb SINE MIR 32 201 -67 6 1103 341 255 209 37 chr3 67980733 67980924 -91618859 - MTEa LTR MaLR -152 227 4 6 1103 328 250 34 8 chr3 67980960 67981077 -91618706 - Lx7 LINE L1 0 7696 7577 6 1103 477 109 0 52 chr3 67981092 67981208 -91618575 + (TCTCTG)n Simple_repeat Simple_repeat 3 112 0 6 1103 261 347 155 40 chr3 67981327 67981771 -91618012 + L2a LINE L2 2913 3407 -19 6 1103 212 271 0 0 chr3 67982744 67982803 -91616980 + (TA)n Simple_repeat Simple_repeat 2 60 0 6 1103 243 241 35 0 chr3 67983501 67983559 -91616224 - L1M5 LINE L1 -469 5655 5596 6 1103 207 202 38 0 chr3 67983834 67983913 -91615870 + (TG)n Simple_repeat Simple_repeat 1 82 0 7 1103 368 238 12 139 chr3 67983980 67984146 -91615637 - B4A SINE B4 0 292 148 7 1103 408 315 25 23 chr3 67984320 67984466 -91615317 - B4A SINE B4 -139 153 1 7 1103 621 0 0 0 chr3 67984709 67984778 -91615005 + (GA)n Simple_repeat Simple_repeat 1 69 0 7 1103 361 310 78 69 chr3 67984782 67985014 -91614769 - ORR1E LTR MaLR -69 290 57 7 1103 182 322 43 22 chr3 67985086 67985178 -91614605 + MIRb SINE MIR 51 144 -124 7 1103 1879 114 88 63 chr3 67985181 67985499 -91614284 + ORR1A3 LTR MaLR 1 326 0 7 1103 232 306 139 35 chr3 67985983 67986098 -91613685 + Kanga1a DNA Tc2 131 257 -497 7 1103 554 332 65 18 chr3 67986581 67986857 -91612926 + L4 LINE RTE 572 860 -1169 7 1103 260 310 118 50 chr3 67986877 67986996 -91612787 + L4 LINE RTE 957 1083 -946 7 1103 603 102 55 18 chr3 67987229 67987339 -91612444 + Lx LINE L1 6540 6653 -1 7 1103 244 329 0 0 chr3 67987600 67987673 -91612110 - ID4_ SINE ID -6 77 5 7 1103 970 69 513 0 chr3 67987719 67987918 -91611865 - Lx4A LINE L1 -338 6720 6420 7 1103 3006 120 2 22 chr3 67987921 67988422 -91611361 + Lx4A LINE L1 5915 6405 -653 7 1103 523 325 51 24 chr3 67988433 67988846 -91610937 - L1ME3A LINE L1 -45 6128 5705 7 1103 708 312 149 19 chr3 67991343 67991808 -91607975 - MLT1F LTR MaLR -8 547 10 7 1103 512 270 64 11 chr3 67993022 67993209 -91606574 + MIR SINE MIR 9 205 -57 7 1103 263 352 68 42 chr3 67993425 67993615 -91606168 - MLT1L LTR MaLR -221 389 195 7 1103 717 290 55 0 chr3 67993724 67993907 -91605876 + B3A SINE B2 1 193 -5 7 1103 372 257 80 7 chr3 67994263 67994400 -91605383 + B1F1 SINE Alu 1 147 -2 7 1103 376 358 68 25 chr3 67996863 67997104 -91602679 + MIR SINE MIR 2 245 -17 7 1103 1134 271 58 18 chr3 67997746 67998035 -91601748 - MTE2b LTR MaLR 0 379 85 7 1103 504 0 0 0 chr3 67998035 67998091 -91601692 + (CA)n Simple_repeat Simple_repeat 2 57 0 7 1103 1134 271 58 18 chr3 67998091 67998128 -91601655 - MTE2b LTR MaLR -295 84 42 7 1103 378 0 0 0 chr3 67998629 67998671 -91601112 + (CA)n Simple_repeat Simple_repeat 1 42 0 7 1103 306 0 0 0 chr3 68000061 68000095 -91599688 + (TTTG)n Simple_repeat Simple_repeat 1 34 0 1 1103 1064 88 0 7 chr3 68001820 68001968 -91597815 + B1_Mus2 SINE Alu 1 147 0 2 1103 312 27 0 0 chr3 68001968 68002005 -91597778 + (A)n Simple_repeat Simple_repeat 1 37 0 3 1103 401 72 14 198 chr3 68002749 68002850 -91596933 + L1Md_F3 LINE L1 6507 6584 0 4 1103 236 240 0 0 chr3 68003008 68003058 -91596725 + (CA)n Simple_repeat Simple_repeat 1 50 0 5 1103 725 185 6 0 chr3 68003073 68003251 -91596532 + (CA)n Simple_repeat Simple_repeat 2 180 0 5 1103 542 217 0 11 chr3 68003285 68003467 -91596316 + (CA)n Simple_repeat Simple_repeat 1 180 0 5 1103 557 222 0 11 chr3 68003487 68003669 -91596114 + (CA)n Simple_repeat Simple_repeat 1 180 0 5 1103 324 0 0 0 chr3 68003725 68003761 -91596022 + (TC)n Simple_repeat Simple_repeat 1 36 0 6 1103 687 25 0 0 chr3 68003761 68003841 -91595942 + (CA)n Simple_repeat Simple_repeat 1 81 0 7 1103 307 233 11 23 chr3 68004070 68004158 -91595625 + CT-rich Low_complexity Low_complexity 4 90 0 8 1103 314 151 19 0 chr3 68004164 68004217 -91595566 - PB1D10 SINE Alu -20 97 44 9 1103 602 250 46 26 chr3 68004468 68004620 -91595163 + B3A SINE B2 28 182 -16 1 1103 589 302 0 30 chr3 68005255 68005419 -91594364 - Tigger5 DNA MER2_type -2139 267 109 1 1103 239 269 63 21 chr3 68005454 68005549 -91594234 - Tigger5 DNA MER2_type -2288 118 20 1 1103 478 291 15 15 chr3 68006295 68006431 -91593352 + B1_Mur2 SINE Alu 1 136 -13 1 1103 202 293 133 0 chr3 68008724 68008799 -91590984 - MIR3 SINE MIR -26 182 98 1 1103 264 215 9 18 chr3 68011965 68012074 -91587709 + (TG)n Simple_repeat Simple_repeat 2 109 0 1 1103 524 361 28 36 chr3 68012092 68012342 -91587441 - B4A SINE B4 -2 290 43 1 1103 562 275 14 0 chr3 68012342 68012484 -91587299 + B4 SINE B4 149 292 0 1 1103 596 81 11 0 chr3 68013342 68013429 -91586354 + (GA)n Simple_repeat Simple_repeat 2 89 0 1 1103 239 333 125 6 chr3 68014251 68014411 -91585372 + MLT1B LTR MaLR 39 217 -173 1 1103 252 68 40 40 chr3 68014994 68015021 -91584762 + (CAAAAA)n Simple_repeat Simple_repeat 2 28 0 1 1103 1215 68 0 0 chr3 68015021 68015169 -91584614 + B1_Mus1 SINE Alu 1 148 0 2 1103 252 68 40 40 chr3 68015169 68015217 -91584566 + (CAAAAA)n Simple_repeat Simple_repeat 5 53 0 2 1103 296 300 14 0 chr3 68015245 68015315 -91584468 + MER81 DNA AcHobo 5 75 -39 2 1103 333 311 94 0 chr3 68015326 68015432 -91584351 - MT2A LTR ERVL -74 459 344 2 1103 547 348 5 5 chr3 68015435 68015620 -91584163 - MT2A LTR ERVL -106 427 243 2 1103 294 194 0 0 chr3 68015622 68015684 -91584099 + (TCG)n Simple_repeat Simple_repeat 2 63 0 2 1103 412 267 84 26 chr3 68015861 68016015 -91583768 - MT2A LTR ERVL -368 165 3 2 1103 849 135 51 6 chr3 68017650 68017813 -91581970 + B2_Mm2 SINE B2 2 172 -21 2 1103 183 42 0 0 chr3 68017813 68017837 -91581946 + (TAA)n Simple_repeat Simple_repeat 1 24 0 2 1103 704 230 45 0 chr3 68017837 68017851 -91581932 + B2_Mm1t SINE B2 173 186 -7 2 1103 243 0 0 0 chr3 68018043 68018070 -91581713 + (TG)n Simple_repeat Simple_repeat 1 27 0 2 1103 396 0 0 0 chr3 68018070 68018113 -91581670 + (GA)n Simple_repeat Simple_repeat 1 44 0 2 1103 184 232 89 0 chr3 68018933 68018989 -91580794 + MIRb SINE MIR 117 177 -91 3 1103 231 36 0 0 chr3 68019445 68019473 -91580310 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 3 1103 593 255 0 31 chr3 68019532 68019694 -91580089 + RSINE1 SINE B4 2 158 -7 3 1103 45 62 0 0 chr3 68019699 68019779 -91580004 + AT_rich Low_complexity Low_complexity 1 80 0 3 1103 556 254 22 7 chr3 68019948 68020083 -91579700 - B3 SINE B2 -15 201 65 3 1103 225 286 16 0 chr3 68021037 68021100 -91578683 + RLTR19C LTR ERVK 34 97 -409 3 1103 777 252 6 18 chr3 68022130 68022296 -91577487 + ID_B1 SINE B4 3 166 -58 3 1103 1291 166 92 55 chr3 68022507 68023048 -91576735 + RMER6C LTR ERVK 1 690 0 3 1103 946 294 51 8 chr3 68023512 68023766 -91576017 + B4A SINE B4 3 267 -25 3 1103 342 0 0 0 chr3 68023777 68023815 -91575968 + (CA)n Simple_repeat Simple_repeat 2 39 0 3 1103 323 283 47 75 chr3 68024238 68024345 -91575438 + PB1D10 SINE Alu 13 116 -1 4 1103 360 0 0 0 chr3 68024562 68024602 -91575181 + (CA)n Simple_repeat Simple_repeat 1 40 0 4 1103 239 279 19 9 chr3 68025070 68025175 -91574608 + L1ME1 LINE L1 5696 5801 -373 4 1103 214 316 0 0 chr3 68025211 68025268 -91574515 + ID4_ SINE ID 27 83 0 4 1103 411 288 69 23 chr3 68025334 68025566 -91574217 + L1ME1 LINE L1 5837 6075 -1920 4 1103 680 246 142 80 chr3 68025645 68025919 -91573864 + B4A SINE B4 2 292 0 4 1104 322 278 182 0 chr3 68026939 68027065 -91572718 - MIR SINE MIR -34 228 80 4 1104 4205 38 4 0 chr3 68028532 68029032 -91570751 + L1Md_F2 LINE L1 6068 6569 -13 4 1104 301 315 87 0 chr3 68029269 68029418 -91570365 - HAL1-3A_ME LINE L1 -411 2447 2286 4 1104 324 0 0 0 chr3 68029418 68029454 -91570329 + (TC)n Simple_repeat Simple_repeat 1 36 0 4 1104 652 254 134 28 chr3 68029493 68029777 -91570006 - Lx8 LINE L1 -194 7279 6966 4 1104 3289 40 0 0 chr3 68029952 68030356 -91569427 + L1Md_F2 LINE L1 6076 6479 -103 5 1104 971 258 16 41 chr3 68030589 68030832 -91568951 + B4A SINE B4 8 244 -48 5 1104 1997 167 75 30 chr3 68031150 68031551 -91568232 + MTC LTR MaLR 3 421 0 5 1104 659 273 132 28 chr3 68031620 68032180 -91567603 + L1MB7 LINE L1 5527 6156 -28 5 1104 685 323 45 0 chr3 68032531 68032729 -91567054 - ID_B1 SINE B4 0 224 18 5 1104 236 338 0 13 chr3 68032663 68032741 -91567042 - BC1_Mm scRNA scRNA -70 82 6 5 1104 243 260 0 13 chr3 68032973 68033051 -91566732 + L1MC LINE L1 4972 5048 -1098 5 1104 844 300 47 40 chr3 68033154 68033605 -91566178 + L1_Mur3 LINE L1 5167 5620 -260 5 1104 355 294 95 51 chr3 68033894 68034285 -91565498 - L1M2 LINE L1 -926 5217 4810 5 1104 298 94 15 15 chr3 68034343 68034408 -91565375 + (TA)n Simple_repeat Simple_repeat 2 66 0 5 1104 589 267 104 74 chr3 68034415 68034654 -91565129 - L1M2 LINE L1 -1457 4686 4420 5 1104 1661 177 79 8 chr3 68034654 68035007 -91564776 - ORR1C1 LTR MaLR 0 378 1 6 1104 589 267 104 74 chr3 68035007 68035296 -91564487 - L1M2 LINE L1 -1724 4419 4142 5 1104 658 297 83 0 chr3 68035434 68035626 -91564157 + B4 SINE B4 12 219 -73 6 1104 4931 98 15 13 chr3 68035673 68036387 -91563396 - Lx3A LINE L1 -7 6974 6259 6 1104 246 237 0 0 chr3 68036410 68036507 -91563276 + (CA)n Simple_repeat Simple_repeat 2 98 0 6 1104 539 251 61 28 chr3 68036565 68036745 -91563038 - MER53 DNA hAT -5 188 3 6 1104 603 40 0 0 chr3 68039445 68039519 -91560264 + (CA)n Simple_repeat Simple_repeat 2 75 0 6 1104 210 385 72 19 chr3 68040709 68040887 -91558896 + MIRb SINE MIR 3 192 -76 6 1104 1460 278 93 43 chr3 68041196 68042330 -91557453 - L1MA9 LINE L1 -98 6214 5016 6 1104 537 338 0 7 chr3 68042354 68042497 -91557286 - ID_B1 SINE B4 -2 222 81 6 1104 180 0 0 0 chr3 68042509 68042529 -91557254 + (CAAA)n Simple_repeat Simple_repeat 4 23 0 6 1104 955 246 21 0 chr3 68042532 68042723 -91557060 - B3 SINE B2 -21 195 1 7 1104 766 203 198 0 chr3 68043173 68043350 -91556433 + B3 SINE B2 2 213 -3 7 1104 349 165 14 57 chr3 68043384 68043525 -91556258 + GA-rich Low_complexity Low_complexity 4 138 0 7 1104 23 54 0 0 chr3 68045015 68045052 -91554731 + AT_rich Low_complexity Low_complexity 1 37 0 7 1104 609 273 43 9 chr3 68045466 68045677 -91554106 + L1MA4 LINE L1 4500 4717 -1426 7 1104 462 294 98 35 chr3 68045690 68046227 -91553556 + L1MA4 LINE L1 4905 5466 -417 7 1104 1351 196 76 0 chr3 68046226 68046567 -91553216 + Lx9 LINE L1 7277 7643 -1 7 1104 963 290 71 6 chr3 68046603 68047064 -91552719 + L1MA4 LINE L1 5497 5974 -215 7 1104 739 0 22 0 chr3 68047640 68047731 -91552052 + (GA)n Simple_repeat Simple_repeat 2 94 0 7 1104 390 147 0 0 chr3 68047780 68047848 -91551935 + (TCTCCC)n Simple_repeat Simple_repeat 3 70 0 7 1104 283 277 124 55 chr3 68048078 68048425 -91551358 + L1_Mur3 LINE L1 1246 1616 -4264 7 1104 389 298 129 68 chr3 68048862 68049125 -91550658 + B4A SINE B4 13 291 -1 7 1104 782 300 132 84 chr3 68051718 68052164 -91547619 - Kanga11a DNA Tc2 0 970 480 8 1104 225 0 0 0 chr3 68052164 68052189 -91547594 + (CAGA)n Simple_repeat Simple_repeat 1 25 0 8 1104 782 300 132 84 chr3 68052189 68052445 -91547338 - Kanga11a DNA Tc2 -491 479 234 8 1104 568 292 0 7 chr3 68052445 68052585 -91547198 + RSINE1 SINE B4 4 142 -23 8 1104 453 36 0 0 chr3 68052585 68052640 -91547143 + (TG)n Simple_repeat Simple_repeat 1 55 0 8 1104 568 292 0 7 chr3 68052640 68052654 -91547129 + RSINE1 SINE B4 143 156 -9 8 1104 192 152 0 0 chr3 68052666 68052699 -91547084 + (TA)n Simple_repeat Simple_repeat 1 33 0 8 1104 21 57 0 0 chr3 68053983 68054018 -91545765 + AT_rich Low_complexity Low_complexity 1 35 0 8 1104 435 313 14 51 chr3 68054027 68054165 -91545618 - RSINE1 SINE B4 -30 135 3 8 1104 195 263 108 69 chr3 68054351 68054453 -91545330 - MIRm SINE MIR -16 260 155 8 1104 184 341 124 40 chr3 68054617 68054794 -91544989 - L2c LINE L2 -280 3107 2916 8 1104 259 291 22 80 chr3 68054986 68055124 -91544659 + L1M5 LINE L1 4678 4807 -1339 8 1104 27 0 0 0 chr3 68055187 68055214 -91544569 + AT_rich Low_complexity Low_complexity 1 27 0 9 1104 838 191 7 0 chr3 68055216 68055363 -91544420 + B1_Mur4 SINE Alu 1 148 -2 9 1104 182 118 0 29 chr3 68055370 68055405 -91544378 + (TAA)n Simple_repeat Simple_repeat 3 36 0 9 1104 290 325 42 32 chr3 68055424 68055707 -91544076 + L1M5 LINE L1 4934 5219 -927 8 1104 270 296 63 0 chr3 68055838 68055980 -91543803 + L1M5 LINE L1 5367 5517 -723 8 1104 519 130 0 0 chr3 68056967 68057067 -91542716 + (GA)n Simple_repeat Simple_repeat 1 100 0 9 1104 363 309 169 47 chr3 68057117 68057372 -91542411 - B4 SINE B4 -2 290 5 9 1104 280 343 141 65 chr3 68058113 68058403 -91541380 + L2 LINE L2 2383 2694 -725 9 1104 636 201 359 0 chr3 68058855 68059039 -91540744 - MTD LTR MaLR 0 419 170 9 1104 307 317 118 21 chr3 68059269 68059556 -91540227 + Charlie7 DNA MER1_type 1510 1824 -788 9 1104 268 355 26 52 chr3 68059572 68059688 -91540095 - PB1D7 SINE Alu -6 114 2 9 1104 234 0 0 0 chr3 68059844 68059870 -91539913 + (CA)n Simple_repeat Simple_repeat 1 26 0 9 1104 437 0 0 19 chr3 68059870 68059923 -91539860 + (TA)n Simple_repeat Simple_repeat 1 53 0 1 1104 28 0 0 0 chr3 68060030 68060058 -91539725 + AT_rich Low_complexity Low_complexity 1 28 0 1 1104 259 288 50 14 chr3 68060192 68060333 -91539450 + L1M5 LINE L1 5740 5885 -288 1 1104 1006 242 34 8 chr3 68061085 68061362 -91538421 - Lx8 LINE L1 -1091 6605 6326 1 1104 927 26 0 0 chr3 68061372 68061486 -91538297 + (TG)n Simple_repeat Simple_repeat 1 114 0 1 1104 229 260 13 40 chr3 68061502 68061578 -91538205 - Lx8 LINE L1 -1516 6180 6107 1 1104 1271 322 61 27 chr3 68061578 68062235 -91537548 + Lx8 LINE L1 6654 7332 -141 1 1104 26 0 0 0 chr3 68062592 68062618 -91537165 + AT_rich Low_complexity Low_complexity 1 26 0 1 1104 951 264 5 0 chr3 68062721 68062929 -91536854 + B3 SINE B2 1 209 -7 1 1104 245 61 0 0 chr3 68063240 68063273 -91536510 + B3A SINE B2 1 33 -165 1 1104 1041 188 103 10 chr3 68063273 68063467 -91536316 + B3 SINE B2 4 215 -1 1 1104 309 51 0 0 chr3 68064686 68064725 -91535058 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 1104 311 326 38 98 chr3 68064763 68065028 -91534755 - L1M5 LINE L1 -373 5751 5503 1 1104 182 37 37 0 chr3 68066399 68066426 -91533357 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 1 1104 763 172 0 22 chr3 68066429 68066566 -91533217 - B1_Mur4 SINE Alu -13 137 4 1 1104 1243 231 90 3 chr3 68066576 68066876 -91532907 - MTE2b LTR MaLR -13 366 41 1 1104 226 292 0 63 chr3 68066900 68066995 -91532788 + Lx9 LINE L1 4873 4961 -886 1 1104 1841 141 54 3 chr3 68066996 68067310 -91532473 + RLTR15 LTR ERVK 30 359 0 1 1104 283 333 57 8 chr3 68067355 68067720 -91532063 + L1_Mur3 LINE L1 5032 5436 -720 1 1104 5610 211 86 17 chr3 68067718 68069111 -91530672 + Lx9 LINE L1 5846 7413 -231 1 1104 494 103 13 0 chr3 68069111 68069189 -91530594 + (TA)n Simple_repeat Simple_repeat 1 79 0 1 1104 5610 205 94 17 chr3 68069189 68069375 -91530408 + Lx9 LINE L1 7414 7642 -2 1 1104 605 297 74 10 chr3 68069523 68069822 -91529961 + L1MA4 LINE L1 5428 5745 -567 1 1104 297 239 42 32 chr3 68069826 68069921 -91529862 + MT2A LTR ERVL 1 96 -437 1 1104 415 194 52 9 chr3 68069921 68070037 -91529746 + L1MA4 LINE L1 5739 5888 -412 1 1104 297 0 0 0 chr3 68070037 68070070 -91529713 + (CA)n Simple_repeat Simple_repeat 2 34 0 1 1104 239 312 69 19 chr3 68070070 68070117 -91529666 + L1MA4 LINE L1 5860 5905 -1568 1 1104 667 315 120 43 chr3 68070525 68071002 -91528781 + L2a LINE L2 2934 3421 -5 1 1104 1376 103 19 0 chr3 68071063 68071277 -91528506 + Lx3_Mus LINE L1 6792 7009 0 1 1104 263 49 0 24 chr3 68071584 68071626 -91528157 + (TTTG)n Simple_repeat Simple_repeat 2 42 0 1 1104 209 306 0 0 chr3 68072798 68072870 -91526913 + (CA)n Simple_repeat Simple_repeat 2 73 0 1 1104 197 402 18 18 chr3 68074158 68074267 -91525516 + L2c LINE L2 3047 3155 -232 1 1104 381 22 0 0 chr3 68075759 68075805 -91523978 + (A)n Simple_repeat Simple_repeat 1 46 0 1 1104 237 369 51 28 chr3 68077145 68077321 -91522462 - MLT1J1 LTR MaLR -155 289 110 1 1104 243 315 19 0 chr3 68078207 68078261 -91521522 - MER58D DNA MER1_type -331 55 1 1 1104 413 308 43 62 chr3 68078269 68078480 -91521303 - MER3 DNA MER1_type 0 209 3 1 1104 2099 153 26 3 chr3 68078845 68079192 -91520591 - ORR1C1 LTR MaLR -3 375 21 1 1104 233 321 82 47 chr3 68079235 68079405 -91520378 - LTR89 LTR ERVL? -600 279 104 1 1104 541 262 82 5 chr3 68079458 68079642 -91520141 + MER63D DNA AcHobo 56 253 -808 1 1104 1184 276 57 65 chr3 68079701 68080028 -91519755 + L1Md_A LINE L1 5089 5371 -772 1 1104 976 90 7 0 chr3 68080028 68080172 -91519611 + L1_Mus1 LINE L1 6423 6567 0 1 1104 1184 273 62 70 chr3 68080172 68080619 -91519164 + L1Md_A LINE L1 5371 5831 -751 1 1104 251 194 0 85 chr3 68080657 68080775 -91519008 + (TATAA)n Simple_repeat Simple_repeat 1 108 0 1 1104 198 183 14 27 chr3 68080778 68080851 -91518932 + (TA)n Simple_repeat Simple_repeat 2 73 0 1 1104 314 292 9 9 chr3 68081281 68081388 -91518395 - PB1D10 SINE Alu -9 108 2 1 1104 1337 93 5 5 chr3 68081409 68081593 -91518190 + B2_Mm2 SINE B2 2 185 -10 1 1104 1411 84 5 0 chr3 68081599 68081790 -91517993 + B2_Mm1t SINE B2 1 192 -1 1 1104 330 155 31 0 chr3 68083191 68083288 -91516495 + (TAGA)n Simple_repeat Simple_repeat 2 101 0 1 1104 1997 167 48 65 chr3 68083852 68084269 -91515514 - RMER4A LTR ERVK 0 466 57 1 1104 565 248 24 0 chr3 68084556 68084681 -91515102 - RSINE1 SINE B4 -35 130 3 1 1104 261 0 0 0 chr3 68084812 68084841 -91514942 + (TTTA)n Simple_repeat Simple_repeat 3 31 0 1 1104 333 0 0 0 chr3 68085273 68085310 -91514473 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 1 1104 1001 85 0 0 chr3 68085310 68085440 -91514343 - B1_Mus1 SINE Alu -9 139 10 1 1104 237 301 23 0 chr3 68085341 68085474 -91514309 - ORR1C1-int LTR MaLR -755 754 619 1 1104 1155 243 55 35 chr3 68085543 68085944 -91513839 - L1MA6 LINE L1 -290 6010 5602 1 1104 239 247 22 0 chr3 68086008 68086097 -91513686 - L1MA6 LINE L1 -822 5478 5388 1 1104 194 81 27 0 chr3 68086097 68086134 -91513649 + (TTGG)n Simple_repeat Simple_repeat 2 39 0 1 1104 207 133 0 0 chr3 68086140 68086185 -91513598 + (T)n Simple_repeat Simple_repeat 1 45 0 1 1104 479 207 0 7 chr3 68086271 68086422 -91513361 + CT-rich Low_complexity Low_complexity 1 150 0 1 1104 242 250 0 0 chr3 68089154 68089210 -91510573 - L1M5 LINE L1 -518 5655 5600 1 1104 1189 275 25 11 chr3 68089226 68089668 -91510115 - L1_Mur3 LINE L1 -864 5013 4566 1 1104 1271 64 0 6 chr3 68089673 68089846 -91509937 - L1Md_F2 LINE L1 -11 6571 6400 1 1104 10497 58 1 1 chr3 68089851 68091552 -91508231 - L1Md_F2 LINE L1 -402 6180 4480 1 1104 9073 47 8 1 chr3 68091546 68092755 -91507028 + L1Md_F2 LINE L1 3286 4503 -1380 1 1104 3236 256 50 34 chr3 68092747 68093546 -91506237 - L1_Mur3 LINE L1 -1301 4579 3753 1 1104 2137 140 28 64 chr3 68093546 68093935 -91505848 - ORR1C1 LTR MaLR -2 376 2 1 1104 3236 256 50 34 chr3 68093935 68093958 -91505825 - L1_Mur3 LINE L1 -2128 3752 3736 1 1104 2232 62 0 0 chr3 68093958 68094232 -91505551 + L1_Mus1 LINE L1 6292 6565 -2 1 1104 3236 256 50 34 chr3 68094232 68094795 -91504988 - L1_Mur3 LINE L1 -2145 3735 3170 1 1104 588 102 0 0 chr3 68094933 68095031 -91504752 + (TG)n Simple_repeat Simple_repeat 2 99 0 1 1104 720 304 61 68 chr3 68095557 68096246 -91503537 - L1MEa LINE L1 -2166 3980 3297 1 1104 194 180 0 39 chr3 68096260 68096312 -91503471 + CT-rich Low_complexity Low_complexity 4 53 0 1 1104 345 271 167 32 chr3 68096439 68096912 -91502871 - L1MEa LINE L1 -5072 1064 528 1 1104 1923 248 61 6 chr3 68096961 68097468 -91502315 + Lx2B LINE L1 6466 7000 0 1 1104 373 340 105 89 chr3 68097605 68097957 -91501826 + MLT1A LTR MaLR 3 379 -11 1 1104 301 337 49 92 chr3 68098419 68098703 -91501080 - L1M5 LINE L1 -3517 2629 2358 1 1104 3613 66 0 8 chr3 68098770 68099242 -91500541 - L1Md_F2 LINE L1 -2 6580 6113 1 1104 609 223 88 24 chr3 68101866 68102036 -91497747 + B3A SINE B2 2 182 -16 1 1104 493 167 0 48 chr3 68102043 68102188 -91497595 + (CA)n Simple_repeat Simple_repeat 1 138 0 1 1104 306 286 9 117 chr3 68102694 68102723 -91497060 - B4A SINE B4 -111 181 86 1 1104 404 228 51 0 chr3 68102723 68102802 -91496981 - B1F1 SINE Alu -66 83 1 1 1104 30 0 0 0 chr3 68103080 68103110 -91496673 + AT_rich Low_complexity Low_complexity 1 30 0 1 1104 1625 286 47 15 chr3 68103122 68104005 -91495778 - Lx5 LINE L1 -20 7030 6209 1 1104 1857 155 105 26 chr3 68104005 68104357 -91495426 - MTC LTR MaLR -41 380 1 1 1104 325 191 108 9 chr3 68104464 68104575 -91495208 - L1MA4 LINE L1 -376 5924 5803 1 1104 221 180 20 0 chr3 68104586 68104636 -91495147 + (TA)n Simple_repeat Simple_repeat 1 51 0 1 1104 226 203 172 0 chr3 68104658 68104722 -91495061 - L1MA4 LINE L1 -533 5758 5684 1 1104 828 264 47 4 chr3 68104724 68104998 -91494785 + L1M2 LINE L1 5350 5635 -662 1 1104 599 13 27 0 chr3 68105187 68105262 -91494521 + (TAGA)n Simple_repeat Simple_repeat 2 78 0 1 1104 557 52 13 0 chr3 68105905 68105982 -91493801 + (TGGA)n Simple_repeat Simple_repeat 4 81 0 1 1104 595 342 26 84 chr3 68106013 68106323 -91493460 - B4A SINE B4 0 292 1 1 1104 5860 77 31 12 chr3 68106514 68107385 -91492398 - L1Md_F2 LINE L1 -7 6575 5727 1 1104 31 26 0 0 chr3 68107646 68107684 -91492099 + AT_rich Low_complexity Low_complexity 1 38 0 1 1104 225 322 32 39 chr3 68107855 68107928 -91491855 - L1ME2z LINE L1 -7 6437 6367 1 1104 2830 159 29 13 chr3 68107928 68108449 -91491334 - RLTR24 LTR ERV1 0 529 1 1 1104 225 322 32 39 chr3 68108449 68108530 -91491253 - L1ME2z LINE L1 -78 6366 6284 1 1104 628 159 8 8 chr3 68111165 68111298 -91488485 - Lx7 LINE L1 -5 7691 7559 1 1104 280 263 54 68 chr3 68114482 68114629 -91485154 - L2a LINE L2 -357 3069 2925 1 1104 885 185 17 146 chr3 68115050 68115290 -91484493 - MTC LTR MaLR 0 421 188 1 1104 379 330 74 35 chr3 68115392 68115703 -91484080 - L1M5 LINE L1 -1827 4319 3997 1 1104 689 212 14 7 chr3 68115977 68116124 -91483659 - RMER10B LTR ERVL 0 398 251 1 1104 204 67 0 0 chr3 68117369 68117399 -91482384 + (T)n Simple_repeat Simple_repeat 1 30 0 1 1104 385 236 0 0 chr3 68117736 68117808 -91481975 - ID4_ SINE ID -4 79 8 1 1104 4418 244 34 63 chr3 68118576 68120173 -91479610 - Lx5 LINE L1 -2 7048 5494 1 1104 251 289 37 37 chr3 68120230 68120338 -91479445 - RLTR14 LTR ERV1 0 382 275 1 1104 336 24 0 0 chr3 68120369 68120410 -91479373 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 1104 852 215 7 0 chr3 68120612 68120761 -91479022 + B1_Mur4 SINE Alu 1 150 0 1 1104 251 242 30 68 chr3 68121557 68121690 -91478093 + MER33 DNA MER1_type 167 294 -30 1 1104 344 261 0 0 chr3 68121724 68121816 -91477967 - MLT1D LTR MaLR 0 505 414 1 1104 732 80 0 0 chr3 68121840 68121940 -91477843 + (TC)n Simple_repeat Simple_repeat 1 100 0 1 1104 284 323 45 8 chr3 68122048 68122182 -91477601 - MLT1D LTR MaLR -260 245 107 1 1104 548 258 62 0 chr3 68122574 68122702 -91477081 + RSINE1 SINE B4 2 137 -28 1 1104 1172 67 4 31 chr3 68122707 68122976 -91476807 + (GGGA)n Simple_repeat Simple_repeat 1 261 0 1 1104 324 0 0 0 chr3 68122978 68123014 -91476769 + (GGAA)n Simple_repeat Simple_repeat 1 36 0 1 1104 25 0 0 0 chr3 68123179 68123204 -91476579 + AT_rich Low_complexity Low_complexity 1 25 0 1 1104 879 259 114 76 chr3 68123445 68123700 -91476083 - ORR1E LTR MaLR -3 356 98 1 1104 675 150 0 67 chr3 68123700 68123850 -91475933 - L1Md_F3 LINE L1 0 6584 6445 1 1104 879 259 114 76 chr3 68123850 68123937 -91475846 - ORR1E LTR MaLR -262 97 2 1 1104 568 312 190 11 chr3 68125248 68125335 -91474448 + L1MDa LINE L1 14 97 -6536 2 1104 5294 41 16 0 chr3 68125335 68125974 -91473809 + L1Md_F3 LINE L1 5936 6584 0 2 1104 568 312 190 11 chr3 68125974 68126265 -91473518 + L1MDa LINE L1 98 459 -6174 2 1104 397 226 134 13 chr3 68126439 68126596 -91473187 + L1MD LINE L1 4633 4808 -1338 2 1104 23 0 0 0 chr3 68126771 68126794 -91472989 + AT_rich Low_complexity Low_complexity 1 23 0 2 1104 225 0 0 0 chr3 68126842 68126867 -91472916 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 2 1104 377 306 134 61 chr3 68126906 68127167 -91472616 - B4A SINE B4 -11 281 2 2 1104 438 298 84 6 chr3 68127467 68127646 -91472137 - MT2A LTR ERVL -7 526 334 2 1104 387 0 0 0 chr3 68127650 68127693 -91472090 + (TATG)n Simple_repeat Simple_repeat 2 44 0 2 1104 1054 252 123 75 chr3 68127726 68128142 -91471641 - Lx5 LINE L1 0 7050 6615 2 1104 271 225 42 0 chr3 68128233 68128304 -91471479 - MT2A LTR ERVL -454 79 6 2 1104 493 215 18 36 chr3 68128378 68128489 -91471294 - B1_Mur1 SINE Alu -1 148 40 2 1104 226 242 84 0 chr3 68128914 68129009 -91470774 - MIRc SINE MIR -159 109 7 2 1104 302 194 38 75 chr3 68129060 68129166 -91470617 - Lx5 LINE L1 -197 6853 6752 2 1104 4190 219 141 35 chr3 68130138 68131823 -91467960 - ORR1D1-int LTR MaLR -15 1355 31 2 1104 1147 202 159 58 chr3 68131824 68132150 -91467633 - ORR1D1 LTR MaLR -11 363 5 2 1104 881 247 5 5 chr3 68132163 68132362 -91467421 - MTD LTR MaLR -217 202 4 2 1104 21 57 0 0 chr3 68132763 68132798 -91466985 + AT_rich Low_complexity Low_complexity 1 35 0 2 1104 282 364 24 12 chr3 68133826 68133993 -91465790 - MIR SINE MIR -58 204 36 2 1104 243 256 10 165 chr3 68134003 68134106 -91465677 - B4A SINE B4 0 292 206 2 1104 1723 215 66 5 chr3 68134154 68134547 -91465236 + MTD LTR MaLR 3 419 0 2 1104 660 259 24 43 chr3 68134547 68134757 -91465026 - B4A SINE B4 -81 211 6 2 1104 426 39 0 0 chr3 68134918 68134970 -91464813 + (TGGA)n Simple_repeat Simple_repeat 1 52 0 2 1104 986 282 26 63 chr3 68135756 68136059 -91463724 + B4A SINE B4 1 292 0 2 1104 2605 59 9 0 chr3 68136086 68136406 -91463377 + L1_Mus1 LINE L1 6245 6567 0 2 1104 264 200 0 0 chr3 68136432 68136532 -91463251 + CT-rich Low_complexity Low_complexity 1 100 0 2 1104 496 285 93 51 chr3 68139339 68139676 -91460107 - ORR1E LTR MaLR -4 375 1 2 1104 237 345 16 43 chr3 68140385 68140504 -91459279 + MIRb SINE MIR 79 198 -70 2 1104 2902 12 0 0 chr3 68140504 68140826 -91458957 - RLTRETN_Mm LTR ERVK 0 322 1 2 1104 237 345 16 43 chr3 68140826 68140891 -91458892 + MIRb SINE MIR 199 258 -10 2 1104 1791 169 3 0 chr3 68141107 68141427 -91458356 - ORR1A4 LTR MaLR -8 321 1 2 1104 405 0 0 0 chr3 68141830 68141875 -91457908 + (TG)n Simple_repeat Simple_repeat 2 46 0 2 1104 810 318 18 47 chr3 68141880 68142154 -91457629 - B4A SINE B4 -26 266 1 2 1104 21 0 0 0 chr3 68142580 68142601 -91457182 + AT_rich Low_complexity Low_complexity 1 21 0 2 1104 728 247 45 0 chr3 68144315 68144469 -91455314 + RSINE1 SINE B4 4 164 -1 2 1104 395 167 0 23 chr3 68144469 68144555 -91455228 + (TATG)n Simple_repeat Simple_repeat 2 85 0 2 1104 241 311 49 56 chr3 68145403 68145546 -91454237 - LTR33 LTR ERVL -48 467 326 2 1104 185 240 40 0 chr3 68146673 68146723 -91453060 + MIR SINE MIR 92 143 -119 2 1104 357 185 0 0 chr3 68147263 68147328 -91452455 - URR1B DNA MER1_type -160 65 1 2 1104 358 329 45 4 chr3 68147409 68147581 -91452202 - MIRc SINE MIR -94 182 3 2 1104 277 307 39 8 chr3 68148317 68148445 -91451338 + ORR1E LTR MaLR 3 134 -225 2 1104 243 269 66 44 chr3 68148570 68148706 -91451077 + L1MA6 LINE L1 6017 6155 -145 2 1104 322 258 0 21 chr3 68148717 68148812 -91450971 - Lx7 LINE L1 -19 7677 7585 2 1104 340 270 11 0 chr3 68148862 68148951 -91450832 - Lx7 LINE L1 -366 7330 7241 2 1104 300 111 0 0 chr3 68150353 68150398 -91449385 + (TGG)n Simple_repeat Simple_repeat 1 45 0 2 1104 368 350 11 21 chr3 68150453 68150640 -91449143 - MIR SINE MIR -53 209 25 2 1104 183 330 98 56 chr3 68151272 68151577 -91448206 - L2b LINE L2 -4 3371 3054 2 1104 656 273 15 69 chr3 68151636 68151676 -91448107 + B4A SINE B4 1 41 -251 2 1104 1372 233 32 94 chr3 68151676 68152079 -91447704 + MTE2a LTR MaLR 1 378 -1 2 1104 656 273 15 69 chr3 68152079 68152298 -91447485 + B4A SINE B4 42 246 -46 2 1104 1255 226 41 52 chr3 68153470 68153815 -91445968 + Lx4B LINE L1 6710 7050 -8 2 1104 2023 186 27 0 chr3 68153861 68154231 -91445552 - RLTR14 LTR ERV1 -2 380 1 2 1104 234 0 0 0 chr3 68154488 68154514 -91445269 + (TG)n Simple_repeat Simple_repeat 1 26 0 2 1105 2853 161 95 40 chr3 68158401 68159054 -91440729 + RMER6C LTR ERVK 2 690 0 2 1105 645 311 68 14 chr3 68159180 68159528 -91440255 - L1MA4A LINE L1 -1711 5933 5601 2 1105 2959 235 16 7 chr3 68159524 68160262 -91439521 - Lx2B LINE L1 0 6997 6225 2 1105 286 300 180 0 chr3 68160774 68160924 -91438859 - RLTR42-int LTR ERVK -4119 1403 1227 2 1105 1401 281 93 22 chr3 68161100 68161780 -91438003 - L1_Mur3 LINE L1 -335 5545 4818 2 1105 901 332 112 16 chr3 68161813 68162312 -91437471 - Lx8 LINE L1 0 7473 6927 2 1105 2626 293 136 48 chr3 68162318 68162671 -91437112 - L1MA4A LINE L1 -1327 4816 4458 2 1105 483 222 16 33 chr3 68162671 68162792 -91436991 - PB1D9 SINE Alu -1 119 1 2 1105 2626 293 136 48 chr3 68162792 68164519 -91435264 - L1MA4A LINE L1 -1686 4457 2555 2 1105 675 339 43 4 chr3 68164514 68164769 -91435014 + Lx8 LINE L1 6922 7186 -287 2 1105 1040 96 0 0 chr3 68164998 68165133 -91434650 + B1_Mus1 SINE Alu 2 136 -12 2 1105 1283 83 0 8 chr3 68165134 68165402 -91434381 + (GAAA)n Simple_repeat Simple_repeat 1 265 0 2 1105 543 101 0 0 chr3 68165426 68165505 -91434278 + (TAGA)n Simple_repeat Simple_repeat 4 82 0 2 1105 355 290 111 22 chr3 68165743 68165923 -91433860 - L1_Mur3 LINE L1 -3471 2409 2204 2 1105 23 0 0 0 chr3 68165927 68165950 -91433833 + AT_rich Low_complexity Low_complexity 1 23 0 2 1105 43 85 0 0 chr3 68166161 68166267 -91433516 + AT_rich Low_complexity Low_complexity 1 106 0 2 1105 2133 260 82 104 chr3 68166267 68167121 -91432662 - Lx8 LINE L1 -6 7467 6633 2 1105 1508 318 72 56 chr3 68167124 68167736 -91432047 + Lx8 LINE L1 5776 6421 -1275 2 1105 1982 168 34 55 chr3 68167736 68168120 -91431663 - ORR1C1 LTR MaLR -2 376 1 2 1105 1508 273 20 35 chr3 68168120 68168324 -91431459 + Lx8 LINE L1 6422 6628 -845 2 1105 22 80 0 0 chr3 68168959 68169009 -91430774 + AT_rich Low_complexity Low_complexity 1 50 0 2 1105 6810 106 11 7 chr3 68169065 68170034 -91429749 + Lx LINE L1 5705 6654 0 2 1105 366 23 0 0 chr3 68170146 68170189 -91429594 + (TA)n Simple_repeat Simple_repeat 1 43 0 2 1105 685 212 30 8 chr3 68170707 68170942 -91428841 - ORR1C2 LTR MaLR 0 384 48 2 1105 573 115 0 0 chr3 68170943 68171030 -91428753 + (TA)n Simple_repeat Simple_repeat 2 88 0 2 1105 377 39 20 0 chr3 68171030 68171081 -91428702 + (TG)n Simple_repeat Simple_repeat 2 53 0 2 1105 183 273 18 0 chr3 68171136 68171191 -91428592 - MIRb SINE MIR -41 227 172 2 1105 1378 90 11 5 chr3 68171221 68171411 -91428372 + B2_Mm2 SINE B2 1 191 -4 2 1105 444 77 0 0 chr3 68172357 68172422 -91427361 + (TC)n Simple_repeat Simple_repeat 1 65 0 2 1105 351 0 0 0 chr3 68172427 68172466 -91427317 + (CA)n Simple_repeat Simple_repeat 1 39 0 2 1105 302 305 94 39 chr3 68173179 68173360 -91426423 - MIRb SINE MIR -28 240 50 2 1105 303 277 362 4 chr3 68173591 68173861 -91425922 - ORR1D2 LTR MaLR 0 370 3 2 1105 450 326 32 36 chr3 68174603 68174880 -91424903 + B4A SINE B4 1 276 -16 2 1105 459 63 0 0 chr3 68174890 68174953 -91424830 + (CA)n Simple_repeat Simple_repeat 1 63 0 2 1105 233 299 61 10 chr3 68175106 68175204 -91424579 - L2c LINE L2 -261 3126 3024 2 1105 26 50 0 0 chr3 68175269 68175309 -91424474 + AT_rich Low_complexity Low_complexity 1 40 0 2 1105 1694 195 14 89 chr3 68175359 68175786 -91423997 + MTC LTR MaLR 19 413 -8 2 1105 1130 276 119 33 chr3 68175951 68176721 -91423062 + L1MB5 LINE L1 5307 6152 -22 2 1105 1707 26 0 0 chr3 68176746 68176939 -91422844 + B2_Mm1a SINE B2 1 193 0 2 1105 2491 166 69 26 chr3 68177272 68177810 -91421973 + RLTR31_Mm LTR ERVK 1 561 0 2 1105 2402 122 55 8 chr3 68177884 68178281 -91421502 - MTC LTR MaLR 0 421 6 2 1105 375 293 213 0 chr3 68178827 68178991 -91420792 + B4 SINE B4 1 199 -93 2 1105 318 80 0 0 chr3 68179034 68179084 -91420699 + (CA)n Simple_repeat Simple_repeat 2 51 0 2 1105 658 244 122 8 chr3 68180567 68180884 -91418899 - MTEb LTR MaLR -5 374 3 2 1105 564 15 0 0 chr3 68182251 68182316 -91417467 + (GAAA)n Simple_repeat Simple_repeat 4 68 0 2 1105 861 84 0 0 chr3 68182316 68182435 -91417348 + (GGGA)n Simple_repeat Simple_repeat 3 121 0 2 1105 1674 209 46 46 chr3 68182644 68183060 -91416723 - MTD LTR MaLR 0 419 4 2 1105 378 0 0 0 chr3 68183066 68183108 -91416675 + (TC)n Simple_repeat Simple_repeat 1 42 0 2 1105 251 203 246 0 chr3 68185145 68185214 -91414569 + AmnSINE1 SINE SINE 1 86 -489 2 1105 262 268 0 0 chr3 68185163 68185219 -91414564 + 5S rRNA rRNA 39 94 -27 2 1105 531 31 0 0 chr3 68185946 68186011 -91413772 + (TG)n Simple_repeat Simple_repeat 1 65 0 2 1105 24 0 0 0 chr3 68186080 68186104 -91413679 + AT_rich Low_complexity Low_complexity 1 24 0 2 1105 366 311 10 0 chr3 68186108 68186211 -91413572 - ID_B1 SINE B4 0 224 121 2 1105 238 318 43 43 chr3 68186120 68186235 -91413548 - B1_Mus1 SINE Alu -12 136 22 2 1105 215 300 158 50 chr3 68186739 68186960 -91412823 + MIRb SINE MIR 16 260 -8 2 1105 226 268 35 35 chr3 68189349 68189434 -91410349 - B4A SINE B4 -22 270 186 2 1105 227 337 10 10 chr3 68189490 68189586 -91410197 - B4A SINE B4 -194 98 3 2 1105 316 362 35 21 chr3 68189701 68189845 -91409938 - MamRep605 Unknown Unknown -275 601 456 2 1105 376 268 30 29 chr3 68190617 68190774 -91409009 - MTEb LTR MaLR 0 379 222 3 1105 368 278 22 0 chr3 68190863 68190953 -91408830 - MTEb LTR MaLR -287 92 1 3 1105 264 167 0 36 chr3 68192376 68192432 -91407351 - MTD LTR MaLR -365 54 1 3 1105 229 276 140 20 chr3 68192465 68192565 -91407218 - PB1D10 SINE Alu -5 112 1 3 1105 234 246 18 0 chr3 68192579 68192636 -91407147 + GA-rich Low_complexity Low_complexity 3 60 0 3 1105 543 347 61 22 chr3 68193629 68193906 -91405877 + LTR16B1 LTR ERVL 100 387 -93 3 1105 4689 116 47 0 chr3 68194655 68195379 -91404404 - L1_Mur2 LINE L1 -1260 4617 3860 3 1105 7461 109 22 32 chr3 68195376 68197383 -91402400 + L1_Mus4 LINE L1 4645 6616 -20 3 1105 4293 299 59 45 chr3 68197682 68197832 -91401951 - RMER15-int LTR ERVL -1305 3694 3530 3 1105 630 0 0 0 chr3 68197832 68197902 -91401881 + (CAAAA)n Simple_repeat Simple_repeat 2 71 0 3 1105 4293 302 58 42 chr3 68197902 68199613 -91400170 - RMER15-int LTR ERVL -1470 3529 1998 3 1105 264 241 35 46 chr3 68199701 68199788 -91399995 - RMER15-int LTR ERVL -3272 1727 1642 3 1105 333 0 0 0 chr3 68200179 68200216 -91399567 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 3 1105 1083 87 0 0 chr3 68200216 68200354 -91399429 - B1_Mus1 SINE Alu -9 139 2 3 1105 530 180 0 10 chr3 68200426 68200527 -91399256 - MTD LTR MaLR 0 419 320 3 1105 640 166 7 54 chr3 68200531 68200678 -91399105 - MTD LTR MaLR -270 149 10 3 1105 3240 287 53 27 chr3 68200691 68201350 -91398433 - RMER15-int LTR ERVL -3560 1439 752 3 1105 963 124 17 0 chr3 68201350 68201527 -91398256 + (TCC)n Simple_repeat Simple_repeat 1 180 0 3 1105 3240 287 53 27 chr3 68201527 68201927 -91397856 - RMER15-int LTR ERVL -4248 751 353 3 1105 207 0 0 0 chr3 68201991 68202014 -91397769 + (CA)n Simple_repeat Simple_repeat 2 24 0 3 1105 26 64 0 0 chr3 68202014 68202061 -91397722 + AT_rich Low_complexity Low_complexity 1 47 0 3 1105 188 204 0 22 chr3 68202749 68202794 -91396989 - MIR3 SINE MIR -15 193 150 3 1105 369 235 92 92 chr3 68203103 68203267 -91396516 - RSINE1 SINE B4 0 165 2 3 1105 389 302 51 34 chr3 68203683 68203858 -91395925 + MIRb SINE MIR 27 204 -64 3 1105 441 0 0 0 chr3 68205197 68205246 -91394537 + (TG)n Simple_repeat Simple_repeat 2 50 0 3 1105 224 328 71 8 chr3 68206834 68206960 -91392823 - MIRc SINE MIR -125 143 10 3 1105 180 0 0 0 chr3 68208323 68208343 -91391440 + (CAT)n Simple_repeat Simple_repeat 1 20 0 3 1105 211 358 0 0 chr3 68208397 68208464 -91391319 + (TATATG)n Simple_repeat Simple_repeat 6 72 0 3 1105 489 34 0 0 chr3 68208475 68208534 -91391249 + (TG)n Simple_repeat Simple_repeat 2 60 0 3 1105 233 153 46 92 chr3 68208871 68208936 -91390847 - B3 SINE B2 -154 62 1 3 1105 220 163 0 44 chr3 68209027 68209072 -91390711 + (TGGG)n Simple_repeat Simple_repeat 3 45 0 3 1105 711 287 47 14 chr3 68209088 68209367 -91390416 - B4A SINE B4 -4 288 1 3 1105 703 277 11 11 chr3 68210862 68211041 -91388742 + B3A SINE B2 2 180 -18 3 1105 244 352 41 0 chr3 68211120 68211242 -91388541 + MIR SINE MIR 48 174 -88 3 1105 319 239 11 43 chr3 68211364 68211548 -91388235 + (TA)n Simple_repeat Simple_repeat 2 179 0 3 1105 287 329 92 0 chr3 68212446 68212598 -91387185 + MER5A DNA MER1_type 1 166 -23 3 1105 751 241 48 11 chr3 68213751 68213940 -91385843 - MTEa LTR MaLR -3 376 181 3 1105 326 267 11 43 chr3 68213969 68214063 -91385720 - MTEa LTR MaLR -280 99 9 3 1105 584 307 7 7 chr3 68214758 68214909 -91384874 + B3A SINE B2 2 152 -46 3 1105 234 62 0 0 chr3 68214915 68214947 -91384836 + (CA)n Simple_repeat Simple_repeat 1 32 0 3 1105 201 263 8 33 chr3 68215466 68215588 -91384195 + (CATATA)n Simple_repeat Simple_repeat 4 122 0 3 1105 292 298 0 12 chr3 68215596 68215681 -91384102 + (CATA)n Simple_repeat Simple_repeat 1 84 0 3 1105 188 286 0 16 chr3 68216078 68216142 -91383641 - L4 LINE RTE -648 1381 1319 3 1105 699 243 151 48 chr3 68216480 68216507 -91383276 - RLTR28B LTR ERVL -138 343 317 3 1105 457 15 15 30 chr3 68216507 68216574 -91383209 + (TTTTG)n Simple_repeat Simple_repeat 5 70 0 3 1105 699 243 151 48 chr3 68216574 68216857 -91382926 - RLTR28B LTR ERVL -165 316 3 3 1105 242 298 96 0 chr3 68217099 68217203 -91382580 + MIRb SINE MIR 119 232 -36 3 1105 608 283 103 5 chr3 68218173 68218358 -91381425 - ID_B1 SINE B4 -8 216 14 3 1105 2056 217 5 23 chr3 68218369 68218382 -91381401 - Lx5 LINE L1 -8 7042 7032 3 1105 216 111 0 0 chr3 68218382 68218418 -91381365 + (TTCA)n Simple_repeat Simple_repeat 2 37 0 3 1105 2056 217 5 23 chr3 68218418 68218834 -91380949 - Lx5 LINE L1 -19 7031 6621 3 1105 1136 224 13 4 chr3 68218834 68219057 -91380726 + Lx5 LINE L1 6409 6633 -417 3 1105 943 245 0 5 chr3 68220440 68220657 -91379126 + B3 SINE B2 1 216 0 3 1105 186 329 12 0 chr3 68221090 68221172 -91378611 + MIR SINE MIR 179 261 -1 3 1105 243 0 0 0 chr3 68221649 68221676 -91378107 + (T)n Simple_repeat Simple_repeat 1 27 0 3 1105 665 226 0 0 chr3 68222335 68222459 -91377324 + B1_Mur2 SINE Alu 5 128 -21 3 1105 820 264 168 42 chr3 68224869 68225178 -91374605 + MTEa LTR MaLR 20 367 -12 3 1105 423 352 61 48 chr3 68225316 68225733 -91374050 + MER115 DNA Tip100 116 563 -130 3 1105 367 247 13 0 chr3 68225742 68225819 -91373964 - ID_B1 SINE B4 -26 198 121 3 1105 453 287 9 0 chr3 68226421 68226536 -91373247 + PB1D10 SINE Alu 2 117 0 3 1105 240 154 0 0 chr3 68227267 68227319 -91372464 + CT-rich Low_complexity Low_complexity 1 52 0 3 1105 210 37 0 0 chr3 68227331 68227358 -91372425 + (CA)n Simple_repeat Simple_repeat 1 27 0 3 1105 3833 66 12 2 chr3 68228151 68228635 -91371148 + L1_Mus1 LINE L1 6078 6566 -1 3 1105 2259 212 35 44 chr3 68228781 68229416 -91370367 - L1_Mur3 LINE L1 -7067 645 17 3 1105 267 227 92 13 chr3 68231255 68231331 -91368452 + ID SINE ID 1 82 -142 3 1105 343 207 24 35 chr3 68231830 68231915 -91367868 + Ricksha_a DNA MuDR 1 84 -1097 3 1105 23 0 0 0 chr3 68231938 68231961 -91367822 + AT_rich Low_complexity Low_complexity 1 23 0 3 1105 567 62 0 0 chr3 68232037 68232117 -91367666 + (TG)n Simple_repeat Simple_repeat 2 81 0 3 1105 823 285 32 39 chr3 68232117 68232387 -91367396 - B4A SINE B4 -23 269 1 3 1105 1927 117 39 0 chr3 68233034 68233343 -91366440 + ORR1A4 LTR MaLR 1 321 -8 3 1105 325 287 68 68 chr3 68233508 68233669 -91366114 + MER74B LTR ERVL 164 324 -298 3 1105 1063 268 82 37 chr3 68233911 68234298 -91365485 - MTD LTR MaLR -14 405 1 3 1105 180 111 0 0 chr3 68234672 68234699 -91365084 + (A)n Simple_repeat Simple_repeat 1 27 0 3 1105 270 0 0 0 chr3 68234915 68234945 -91364838 + (TC)n Simple_repeat Simple_repeat 1 30 0 3 1105 270 0 0 0 chr3 68234945 68234974 -91364809 + (CA)n Simple_repeat Simple_repeat 1 30 0 3 1105 411 215 21 21 chr3 68235510 68235605 -91364178 + PB1D9 SINE Alu 5 99 -21 3 1105 388 262 126 1 chr3 68236669 68236808 -91362975 - MTEa LTR MaLR -3 404 219 3 1105 637 204 6 6 chr3 68237592 68237750 -91362033 + (TA)n Simple_repeat Simple_repeat 2 159 0 3 1105 266 278 94 94 chr3 68240729 68240856 -91358927 + L2b LINE L2 3249 3375 0 3 1105 363 23 0 0 chr3 68241477 68241521 -91358262 + (TG)n Simple_repeat Simple_repeat 2 45 0 3 1105 796 255 81 19 chr3 68241569 68241829 -91357954 - B4A SINE B4 -16 276 1 3 1105 844 252 96 3 chr3 68242710 68243001 -91356782 - Lx8 LINE L1 -297 7176 6859 3 1105 1667 62 0 132 chr3 68243674 68243815 -91355968 - L1_Mus4 LINE L1 0 6636 6539 3 1105 778 0 105 0 chr3 68243815 68243977 -91355806 + (TCTCC)n Simple_repeat Simple_repeat 1 179 0 3 1105 1667 62 0 132 chr3 68243977 68244155 -91355628 - L1_Mus4 LINE L1 -98 6538 6369 3 1105 251 282 63 13 chr3 68244389 68244468 -91355315 + ID4_ SINE ID 1 83 0 3 1105 248 325 13 174 chr3 68244661 68244735 -91355048 - B4A SINE B4 -23 269 206 3 1105 1329 73 51 6 chr3 68244735 68244913 -91354870 - B2_Mm2 SINE B2 -8 187 2 3 1105 248 325 13 174 chr3 68244913 68244987 -91354796 - B4A SINE B4 -87 205 145 3 1105 899 257 14 0 chr3 68245322 68245532 -91354251 - B3 SINE B2 0 216 4 3 1105 1050 229 9 0 chr3 68245549 68245759 -91354024 - B3 SINE B2 -4 212 1 3 1105 347 191 44 0 chr3 68245817 68245885 -91353898 - PB1D10 SINE Alu -7 110 40 3 1105 21 0 0 0 chr3 68246331 68246352 -91353431 + AT_rich Low_complexity Low_complexity 1 21 0 3 1105 656 269 14 88 chr3 68246967 68247183 -91352600 + ID_B1 SINE B4 3 202 -22 3 1105 216 276 26 26 chr3 68247691 68247769 -91352014 + L2c LINE L2 3087 3164 -223 3 1105 308 260 0 38 chr3 68248898 68248978 -91350805 + ID4_ SINE ID 7 83 0 3 1105 21 82 0 0 chr3 68249033 68249082 -91350701 + AT_rich Low_complexity Low_complexity 1 49 0 3 1105 473 301 13 20 chr3 68249784 68249933 -91349850 + B1F SINE Alu 1 148 -1 3 1105 1896 167 80 30 chr3 68249996 68250360 -91349423 - ORR1C2 LTR MaLR -2 382 1 3 1105 205 301 112 16 chr3 68250553 68250678 -91349105 + MIRb SINE MIR 81 217 -51 3 1105 201 175 0 0 chr3 68251124 68251164 -91348619 + CT-rich Low_complexity Low_complexity 6 45 0 3 1105 281 387 40 66 chr3 68251840 68252219 -91347564 - LTR33 LTR ERVL -113 402 34 3 1105 1186 227 104 0 chr3 68252452 68252730 -91347053 + ORR1E LTR MaLR 1 307 -52 3 1105 387 0 0 0 chr3 68252824 68252867 -91346916 + (TATG)n Simple_repeat Simple_repeat 2 44 0 3 1105 994 64 57 0 chr3 68252869 68253010 -91346773 - B2_Mm2 SINE B2 -44 151 3 3 1105 324 70 0 0 chr3 68253254 68253297 -91346486 + (TTGG)n Simple_repeat Simple_repeat 1 43 0 3 1105 754 131 24 39 chr3 68253325 68253452 -91346331 - B1_Mur4 SINE Alu -4 146 22 3 1105 233 29 29 0 chr3 68253473 68253507 -91346276 + (TTTG)n Simple_repeat Simple_repeat 1 35 0 3 1105 872 130 43 58 chr3 68253507 68253686 -91346097 - B2_Mm2 SINE B2 -11 184 7 3 1105 329 336 134 38 chr3 68253704 68254069 -91345714 - Lx9 LINE L1 -171 7473 7095 3 1105 2136 256 105 33 chr3 68254261 68254676 -91345107 + L1MA7 LINE L1 5444 5870 -421 3 1105 1700 236 57 41 chr3 68254676 68255060 -91344723 - RLTR19 LTR ERVK 0 499 113 3 1105 1749 16 0 0 chr3 68255060 68255253 -91344530 + B2_Mm1t SINE B2 1 193 0 4 1105 1700 236 57 41 chr3 68255253 68255285 -91344498 - RLTR19 LTR ERVK -387 112 80 3 1105 405 0 0 0 chr3 68255285 68255330 -91344453 + (TG)n Simple_repeat Simple_repeat 1 45 0 4 1105 1700 236 57 41 chr3 68255330 68255403 -91344380 - RLTR19 LTR ERVK -420 79 2 3 1105 2136 256 105 33 chr3 68255403 68255778 -91344005 + L1MA7 LINE L1 5871 6291 0 3 1105 253 320 27 0 chr3 68255783 68255858 -91343925 + ID SINE ID 2 78 -146 4 1105 784 263 43 9 chr3 68255913 68256124 -91343659 + ID_B1 SINE B4 7 224 0 4 1105 796 211 194 0 chr3 68256226 68256406 -91343377 + B3 SINE B2 2 216 0 4 1105 557 200 191 18 chr3 68256867 68256878 -91342905 - B3A SINE B2 0 198 185 4 1105 249 33 0 0 chr3 68256878 68256908 -91342875 + (GA)n Simple_repeat Simple_repeat 1 30 0 4 1105 557 200 191 18 chr3 68256908 68257064 -91342719 - B3A SINE B2 -14 184 2 4 1105 253 70 68 27 chr3 68257553 68257627 -91342156 + (CACCC)n Simple_repeat Simple_repeat 2 78 0 4 1105 327 211 100 55 chr3 68258095 68258205 -91341578 - MLT1A1 LTR MaLR 0 408 294 4 1105 274 288 86 43 chr3 68258340 68258456 -91341327 - MLT1A1 LTR MaLR -286 122 2 4 1105 1074 88 0 0 chr3 68258532 68258668 -91341115 + B1_Mm SINE Alu 3 138 -9 4 1105 198 71 0 0 chr3 68258668 68258696 -91341087 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 4 1105 977 171 193 0 chr3 68258953 68259134 -91340649 - B3 SINE B2 0 216 1 4 1105 1692 129 53 20 chr3 68259574 68259875 -91339908 - ORR1A4 LTR MaLR -8 321 11 4 1105 390 271 0 0 chr3 68259879 68260019 -91339764 + (TA)n Simple_repeat Simple_repeat 1 140 0 4 1105 285 195 24 61 chr3 68260789 68260871 -91338912 + B1_Mur2 SINE Alu 70 148 -1 4 1105 498 75 0 0 chr3 68260882 68260949 -91338834 + (TGGA)n Simple_repeat Simple_repeat 4 70 0 4 1105 861 83 0 0 chr3 68261231 68261351 -91338432 + B1_Mus2 SINE Alu 1 120 -27 4 1105 315 0 0 0 chr3 68261356 68261391 -91338392 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 4 1105 1342 203 4 4 chr3 68261832 68262079 -91337704 - Lx5 LINE L1 -415 6635 6389 4 1105 1883 203 56 13 chr3 68262079 68262474 -91337309 + Lx5 LINE L1 6628 7039 -11 4 1105 263 28 28 0 chr3 68262475 68262511 -91337272 + (GA)n Simple_repeat Simple_repeat 2 38 0 4 1105 518 252 0 0 chr3 68263178 68263297 -91336486 + Charlie2b DNA MER1_type 1781 1899 -883 4 1105 27 0 0 0 chr3 68263412 68263439 -91336344 + AT_rich Low_complexity Low_complexity 1 27 0 4 1105 342 0 0 0 chr3 68263581 68263619 -91336164 + (TAG)n Simple_repeat Simple_repeat 1 38 0 4 1105 2772 60 30 93 chr3 68263622 68264061 -91335722 - RLTR10A LTR ERVK 0 411 1 4 1105 714 257 52 26 chr3 68264126 68264318 -91335465 + B3A SINE B2 2 198 0 4 1105 289 0 49 0 chr3 68265116 68265157 -91334626 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 4 1105 605 231 0 15 chr3 68265450 68265582 -91334201 + B1_Mur2 SINE Alu 19 148 -1 4 1105 475 303 36 89 chr3 68265758 68266128 -91333655 - MTEb LTR MaLR -5 374 3 4 1105 1385 252 133 5 chr3 68266128 68266269 -91333514 - MTE-int LTR MaLR -51 1529 1362 4 1105 357 24 0 0 chr3 68266269 68266311 -91333472 + (CAATA)n Simple_repeat Simple_repeat 2 43 0 4 1105 1385 252 133 5 chr3 68266311 68266600 -91333183 - MTE-int LTR MaLR -219 1361 1044 4 1105 25 0 0 0 chr3 68267954 68267979 -91331804 + AT_rich Low_complexity Low_complexity 1 25 0 4 1105 209 33 0 32 chr3 68268130 68268161 -91331622 + (CA)n Simple_repeat Simple_repeat 2 31 0 4 1105 378 299 42 24 chr3 68268212 68268380 -91331403 - Lx9 LINE L1 -225 7419 7249 4 1105 391 321 8 15 chr3 68268433 68268566 -91331217 - ORR1E LTR MaLR -227 132 1 4 1105 275 48 111 0 chr3 68268661 68268724 -91331059 + (GTTTG)n Simple_repeat Simple_repeat 2 71 0 4 1105 332 221 0 0 chr3 68268792 68268860 -91330923 - B1_Mur3 SINE Alu -3 146 79 4 1105 532 179 152 0 chr3 68268848 68268960 -91330823 + B1_Mur2 SINE Alu 12 140 -9 4 1105 189 0 0 0 chr3 68268961 68268982 -91330801 + (CAAA)n Simple_repeat Simple_repeat 4 24 0 4 1105 270 0 0 0 chr3 68269059 68269089 -91330694 + (TG)n Simple_repeat Simple_repeat 1 30 0 4 1105 925 240 5 0 chr3 68269089 68269281 -91330502 - B3 SINE B2 -23 193 1 4 1105 285 356 11 0 chr3 68269281 68269367 -91330416 - B4A SINE B4 -197 95 9 4 1105 248 284 49 0 chr3 68269396 68269505 -91330278 - B1F1 SINE Alu 0 149 3 4 1105 1470 186 169 33 chr3 68269616 68269982 -91329801 + MTC LTR MaLR 6 421 0 4 1105 234 0 0 0 chr3 68271392 68271418 -91328365 + (T)n Simple_repeat Simple_repeat 1 26 0 4 1105 215 191 43 60 chr3 68271430 68271547 -91328236 + T-rich Low_complexity Low_complexity 1 115 0 4 1105 471 252 51 51 chr3 68273705 68273843 -91325940 + RSINE1 SINE B4 28 165 0 4 1105 188 371 48 0 chr3 68274141 68274246 -91325537 + MIRm SINE MIR 39 148 -128 4 1105 186 305 85 0 chr3 68274452 68274534 -91325249 - L3b LINE CR1 -246 236 148 4 1105 319 89 36 0 chr3 68275391 68275447 -91324336 + (CA)n Simple_repeat Simple_repeat 1 58 0 4 1105 975 236 39 0 chr3 68275557 68275760 -91324023 - B3 SINE B2 -5 211 1 4 1105 294 125 0 0 chr3 68276377 68276425 -91323358 + (TCC)n Simple_repeat Simple_repeat 3 50 0 4 1105 190 306 176 8 chr3 68276502 68276627 -91323156 - MER5A DNA MER1_type -37 152 7 4 1105 333 0 0 0 chr3 68276696 68276733 -91323050 + (TG)n Simple_repeat Simple_repeat 1 37 0 4 1105 1736 153 43 20 chr3 68277114 68277460 -91322323 - ORR1B1 LTR MaLR 0 394 41 4 1105 568 246 8 8 chr3 68277467 68277586 -91322197 - B1F SINE Alu -30 119 1 4 1105 227 208 12 83 chr3 68277586 68277615 -91322168 + YREP_Mm Unknown Unknown 317 339 -1473 4 1105 321 140 0 0 chr3 68277821 68277878 -91321905 + (TCCC)n Simple_repeat Simple_repeat 2 58 0 4 1105 292 235 14 14 chr3 68277911 68277980 -91321803 + PB1D10 SINE Alu 21 89 -28 4 1105 392 122 14 0 chr3 68278185 68278259 -91321524 + Lx3C LINE L1 6901 6975 -1 4 1105 484 248 157 0 chr3 68278332 68278453 -91321330 + B1_Mur2 SINE Alu 5 144 -5 4 1105 310 261 4 47 chr3 68278490 68278608 -91321175 + B1F SINE Alu 31 139 -10 4 1105 562 228 0 0 chr3 68278746 68278860 -91320923 + PB1D9 SINE Alu 2 115 -5 4 1105 240 35 0 0 chr3 68279602 68279631 -91320152 + (TCTG)n Simple_repeat Simple_repeat 2 30 0 4 1105 229 282 213 41 chr3 68279752 68279874 -91319909 + LTR90B LTR LTR 103 245 -551 4 1105 473 290 8 119 chr3 68279915 68280011 -91319772 + ID_B1 SINE B4 16 224 0 4 1105 702 150 47 13 chr3 68280011 68280150 -91319633 + B1_Mur4 SINE Alu 13 149 -1 4 1105 577 300 94 10 chr3 68280214 68280406 -91319377 + ID_B1 SINE B4 17 224 0 4 1105 242 288 0 57 chr3 68280809 68280879 -91318904 + L2b LINE L2 3304 3369 -6 4 1105 24 53 0 0 chr3 68281131 68281169 -91318614 + AT_rich Low_complexity Low_complexity 1 38 0 4 1105 953 91 0 36 chr3 68281215 68281352 -91318431 + B1_Mus2 SINE Alu 11 142 -5 4 1105 1423 172 246 15 chr3 68282094 68282436 -91317347 + MTC LTR MaLR 1 421 0 4 1105 349 211 14 0 chr3 68282502 68282573 -91317210 - ID4_ SINE ID -9 74 3 4 1105 502 295 0 0 chr3 68282583 68282695 -91317088 - ID_B1 SINE B4 -7 217 106 4 1105 266 203 29 0 chr3 68282700 68282769 -91317014 + (TCTG)n Simple_repeat Simple_repeat 4 74 0 4 1105 339 105 0 0 chr3 68282770 68282827 -91316956 + (TC)n Simple_repeat Simple_repeat 2 58 0 4 1105 351 0 0 0 chr3 68282827 68282866 -91316917 + (CA)n Simple_repeat Simple_repeat 1 39 0 4 1105 229 295 126 0 chr3 68284774 68284800 -91314983 + MER113A DNA MER1_type 80 105 -209 4 1105 321 26 0 0 chr3 68284800 68284838 -91314945 + (CATA)n Simple_repeat Simple_repeat 1 38 0 4 1105 229 295 126 0 chr3 68284838 68284906 -91314877 + MER113A DNA MER1_type 106 185 -129 4 1105 360 219 207 16 chr3 68285090 68285211 -91314572 - B1F2 SINE Alu -5 144 1 4 1105 253 336 5 23 chr3 68285445 68285531 -91314252 - MER104 DNA Tc2 0 181 93 4 1105 697 253 5 47 chr3 68285531 68285722 -91314061 + B3A SINE B2 2 184 -14 4 1105 245 350 26 59 chr3 68285722 68285787 -91313996 - MER104 DNA Tc2 -89 92 35 4 1105 661 174 7 80 chr3 68286074 68286224 -91313559 - B1_Mur3 SINE Alu -10 139 1 4 1105 33 0 0 0 chr3 68286551 68286584 -91313199 + AT_rich Low_complexity Low_complexity 1 33 0 4 1105 269 271 0 28 chr3 68287545 68287617 -91312166 + ID2 SINE ID 4 73 -10 4 1105 758 243 100 69 chr3 68287565 68287826 -91311957 + B4A SINE B4 24 292 0 4 1105 252 0 0 0 chr3 68287844 68287872 -91311911 + (TG)n Simple_repeat Simple_repeat 1 28 0 4 1105 438 20 0 0 chr3 68287872 68287922 -91311861 + (GA)n Simple_repeat Simple_repeat 1 51 0 4 1105 541 193 36 7 chr3 68287922 68288033 -91311750 - B1_Mur2 SINE Alu -18 131 21 4 1106 414 127 0 0 chr3 68288608 68288679 -91311104 + (T)n Simple_repeat Simple_repeat 1 71 0 4 1106 826 207 143 5 chr3 68288768 68288957 -91310826 - B3 SINE B2 0 216 2 4 1106 527 0 16 0 chr3 68288962 68289025 -91310758 + (TAA)n Simple_repeat Simple_repeat 2 65 0 4 1106 1086 106 0 0 chr3 68289030 68289171 -91310612 - B1_Mus2 SINE Alu -5 142 2 4 1106 21 0 0 0 chr3 68289176 68289197 -91310586 + AT_rich Low_complexity Low_complexity 1 21 0 4 1106 690 170 43 36 chr3 68289214 68289354 -91310429 + B1_Mur1 SINE Alu 7 147 -2 4 1106 288 244 50 25 chr3 68290411 68290491 -91309292 - MER91C DNA Tip100 -8 132 51 4 1106 1667 42 0 0 chr3 68290827 68291019 -91308764 - B2_Mm1a SINE B2 0 193 2 4 1106 442 286 44 25 chr3 68291059 68291217 -91308566 - RSINE1 SINE B4 -2 163 3 4 1106 3644 178 65 8 chr3 68291432 68292136 -91307647 - RMER1B Other Other 0 1066 6 4 1106 758 196 29 0 chr3 68292960 68293098 -91306685 - B1_Mus1 SINE Alu -1 147 6 4 1106 864 178 52 36 chr3 68293105 68293297 -91306486 - B2_Mm2 SINE B2 0 195 1 4 1106 422 218 195 16 chr3 68293308 68293455 -91306328 - B3 SINE B2 -11 205 46 5 1106 288 0 0 0 chr3 68293466 68293498 -91306285 + (T)n Simple_repeat Simple_repeat 1 32 0 5 1106 417 328 34 39 chr3 68293708 68293886 -91305897 + MIR SINE MIR 19 195 -67 5 1106 247 265 0 14 chr3 68294200 68294269 -91305514 - ID4 SINE ID -15 68 1 5 1106 238 233 122 0 chr3 68294296 68294386 -91305397 + MER112 DNA MER1_type 147 247 -14 5 1106 3170 77 0 0 chr3 68294543 68294946 -91304837 - L1_Mus1 LINE L1 0 6567 6165 5 1106 305 186 0 14 chr3 68295836 68295907 -91303876 + (TATG)n Simple_repeat Simple_repeat 1 70 0 5 1106 353 220 253 112 chr3 68295937 68296178 -91303605 - B4A SINE B4 -16 276 2 5 1106 225 0 0 0 chr3 68297742 68297767 -91302016 + (CCG)n Simple_repeat Simple_repeat 1 25 0 5 1106 204 40 0 0 chr3 68298031 68298056 -91301727 + (CGGGG)n Simple_repeat Simple_repeat 5 29 0 5 1106 222 91 0 0 chr3 68298710 68298743 -91301040 + (GGA)n Simple_repeat Simple_repeat 1 33 0 5 1106 279 0 0 0 chr3 68300010 68300041 -91299742 + (T)n Simple_repeat Simple_repeat 1 31 0 5 1106 423 0 0 0 chr3 68300750 68300797 -91298986 + (TTCC)n Simple_repeat Simple_repeat 1 47 0 5 1106 23 0 0 0 chr3 68300894 68300917 -91298866 + AT_rich Low_complexity Low_complexity 1 23 0 5 1106 297 326 122 0 chr3 68300958 68301056 -91298727 - RSINE1 SINE B4 -17 148 39 5 1106 834 149 7 15 chr3 68301778 68301914 -91297869 + B1_Mur4 SINE Alu 9 143 -7 5 1106 585 260 0 8 chr3 68302014 68302142 -91297641 - B3 SINE B2 -8 208 82 5 1106 503 133 150 20 chr3 68302142 68302242 -91297541 - ORR1D1 LTR MaLR 0 370 258 5 1106 569 271 41 29 chr3 68302258 68302429 -91297354 - ORR1D1 LTR MaLR -193 181 9 5 1106 254 171 0 0 chr3 68302433 68302474 -91297309 - B3 SINE B2 -131 85 45 5 1106 497 263 0 36 chr3 68302475 68302613 -91297170 - ID_B1 SINE B4 -9 215 83 5 1106 191 36 36 0 chr3 68302935 68302963 -91296820 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 5 1106 221 175 32 81 chr3 68302963 68303025 -91296758 - B1_Mus2 SINE Alu -10 137 79 5 1106 428 263 20 62 chr3 68303934 68304080 -91295703 - HAL1-3A_ME LINE L1 -743 2115 1976 5 1106 534 31 0 0 chr3 68304091 68304155 -91295628 + (TA)n Simple_repeat Simple_repeat 1 64 0 5 1106 485 162 200 25 chr3 68304156 68304276 -91295507 - B1_Mus1 SINE Alu -1 147 7 5 1106 384 22 0 0 chr3 68304707 68304752 -91295031 + (CA)n Simple_repeat Simple_repeat 1 45 0 5 1106 419 335 54 14 chr3 68304993 68305223 -91294560 - L1M5 LINE L1 -403 5776 5541 5 1106 342 0 0 0 chr3 68305284 68305322 -91294461 + (TG)n Simple_repeat Simple_repeat 2 39 0 5 1106 428 274 0 0 chr3 68305360 68305444 -91294339 - RSINE1 SINE B4 -81 84 1 5 1106 340 157 211 14 chr3 68306345 68306416 -91293367 + RSINE1 SINE B4 12 96 -69 5 1106 432 137 23 31 chr3 68306497 68306625 -91293158 + (CATA)n Simple_repeat Simple_repeat 2 128 0 5 1106 635 248 0 8 chr3 68306625 68306751 -91293032 - B1_Mm SINE Alu -22 125 1 5 1106 1821 206 81 35 chr3 68307081 68307538 -91292245 - Lx8 LINE L1 -147 7326 6849 5 1106 753 43 0 0 chr3 68307581 68307674 -91292109 + (TCTA)n Simple_repeat Simple_repeat 2 94 0 5 1106 240 35 0 0 chr3 68308692 68308721 -91291062 + (CA)n Simple_repeat Simple_repeat 2 30 0 5 1106 394 354 13 13 chr3 68308999 68309148 -91290635 + RSINE1 SINE B4 1 149 -16 5 1106 237 310 14 27 chr3 68309264 68309337 -91290446 - MIR SINE MIR -110 166 89 5 1106 212 269 0 19 chr3 68309871 68309924 -91289859 - PB1D10 SINE Alu -3 114 63 5 1106 527 208 19 19 chr3 68310051 68310159 -91289624 - ID_B1 SINE B4 -41 183 76 5 1106 480 262 90 12 chr3 68310501 68310667 -91289116 - L1MD3 LINE L1 -16 7979 7801 5 1106 296 310 24 57 chr3 68310757 68310880 -91288903 - MamRep1879 DNA hAT? -92 124 6 5 1106 242 294 12 12 chr3 68310938 68311024 -91288759 + PB1 SINE Alu 42 127 0 5 1106 3811 151 47 33 chr3 68311198 68311929 -91287854 - Lx4B LINE L1 -7 7051 6311 5 1106 313 335 37 31 chr3 68313281 68313444 -91286339 - MamSINE1 SINE tRNA -96 194 31 5 1106 206 118 0 0 chr3 68313670 68313704 -91286079 + (T)n Simple_repeat Simple_repeat 1 34 0 5 1106 2811 65 3 11 chr3 68313771 68314131 -91285652 + L1_Mus1 LINE L1 6211 6567 0 5 1106 293 0 27 0 chr3 68314222 68314259 -91285524 + (GA)n Simple_repeat Simple_repeat 1 38 0 5 1106 577 259 108 14 chr3 68314372 68314561 -91285222 + MTD LTR MaLR 1 215 -204 5 1106 702 222 0 71 chr3 68314566 68314721 -91285062 + B1_Mur4 SINE Alu 6 149 -1 5 1106 508 188 101 8 chr3 68314780 68314910 -91284873 + MTD LTR MaLR 253 405 -14 5 1106 440 255 0 19 chr3 68315159 68315263 -91284520 - PB1D10 SINE Alu -2 115 14 5 1106 572 255 112 16 chr3 68315784 68315971 -91283812 + ID_B1 SINE B4 20 224 0 5 1106 491 286 154 16 chr3 68317005 68317193 -91282590 + B4A SINE B4 3 216 -76 5 1106 903 26 46 13 chr3 68317232 68317385 -91282398 + (CA)n Simple_repeat Simple_repeat 1 158 0 5 1106 692 138 8 0 chr3 68318603 68318733 -91281050 + (GA)n Simple_repeat Simple_repeat 1 131 0 5 1106 341 259 12 0 chr3 68318836 68318921 -91280862 - B4A SINE B4 -205 87 2 5 1106 378 278 9 0 chr3 68319213 68319321 -91280462 + PB1D10 SINE Alu 1 109 -8 5 1106 261 268 18 0 chr3 68319338 68319394 -91280389 + ID4 SINE ID 21 77 -6 5 1106 246 194 0 0 chr3 68319480 68319542 -91280241 + (TTA)n Simple_repeat Simple_repeat 1 62 0 5 1106 871 179 23 11 chr3 68319878 68320053 -91279730 - Lx9 LINE L1 -152 7492 7316 5 1106 333 0 0 0 chr3 68320651 68320688 -91279095 + (TG)n Simple_repeat Simple_repeat 1 37 0 5 1106 470 118 11 0 chr3 68321731 68321824 -91277959 + (TG)n Simple_repeat Simple_repeat 1 94 0 5 1106 375 23 0 0 chr3 68321824 68321868 -91277915 + (GA)n Simple_repeat Simple_repeat 1 44 0 5 1106 636 290 87 24 chr3 68321902 68322156 -91277627 - MLT2D LTR ERVL -143 271 2 5 1106 255 262 66 0 chr3 68322246 68322374 -91277409 - MER5A DNA MER1_type -26 140 1 5 1106 420 20 0 0 chr3 68322917 68322966 -91276817 + (TG)n Simple_repeat Simple_repeat 1 49 0 5 1106 40575 27 1 6 chr3 68323063 68329305 -91270478 - L1Md_T LINE L1 0 6582 376 5 1106 962 260 79 31 chr3 68329305 68329559 -91270224 - B4A SINE B4 -26 266 1 5 1106 377 237 42 34 chr3 68329877 68329995 -91269788 + RSINE1 SINE B4 2 120 -45 5 1106 367 302 95 57 chr3 68330327 68330538 -91269245 - LTR33A LTR ERVL 0 520 302 5 1106 405 0 0 0 chr3 68331127 68331172 -91268611 + (TG)n Simple_repeat Simple_repeat 1 45 0 5 1106 836 248 79 61 chr3 68332044 68332323 -91267460 + B4A SINE B4 1 284 -8 5 1106 395 262 123 34 chr3 68332721 68332867 -91266916 - MLT1D LTR MaLR -3 502 344 5 1106 478 324 60 60 chr3 68332926 68333159 -91266624 - MLT1D LTR MaLR -264 241 9 5 1106 241 284 52 141 chr3 68333861 68333996 -91265787 + MER5B DNA MER1_type 1 123 -55 5 1106 277 311 12 22 chr3 68334269 68334374 -91265409 + MIR SINE MIR 48 147 -115 5 1106 22 0 0 0 chr3 68334592 68334614 -91265169 + AT_rich Low_complexity Low_complexity 1 22 0 5 1106 981 92 11 49 chr3 68334625 68334808 -91264975 + Lx LINE L1 6479 6654 0 5 1106 360 0 0 0 chr3 68334869 68334909 -91264874 + (TG)n Simple_repeat Simple_repeat 1 40 0 5 1106 396 0 0 0 chr3 68334909 68334952 -91264831 + (GA)n Simple_repeat Simple_repeat 1 44 0 5 1106 636 238 19 64 chr3 68334974 68335131 -91264652 - B3A SINE B2 -47 151 2 5 1106 1698 143 96 25 chr3 68336152 68336475 -91263308 - RMER15 LTR ERVL 0 575 230 5 1106 275 136 174 43 chr3 68336487 68336556 -91263227 - RMER15 LTR ERVL -471 104 27 5 1106 967 157 6 19 chr3 68336568 68336730 -91263053 - URR1A DNA MER1_type 0 226 67 5 1106 709 196 27 20 chr3 68337052 68337156 -91262627 - B1_Mur3 SINE Alu -2 147 43 5 1106 1281 14 0 0 chr3 68337156 68337303 -91262480 + (TCTCCC)n Simple_repeat Simple_repeat 5 151 0 5 1106 709 196 27 20 chr3 68337303 68337344 -91262439 - B1_Mur3 SINE Alu -107 42 2 5 1106 363 89 0 0 chr3 68337655 68337711 -91262072 + (TG)n Simple_repeat Simple_repeat 1 56 0 5 1106 815 281 87 30 chr3 68337713 68337977 -91261806 - B4A SINE B4 -13 279 1 5 1106 214 260 58 77 chr3 68337977 68338081 -91261702 + MIR SINE MIR 65 170 -98 5 1106 180 0 0 0 chr3 68338516 68338536 -91261247 + (C)n Simple_repeat Simple_repeat 1 20 0 5 1106 191 274 9 144 chr3 68339881 68339992 -91259791 + L3 LINE CR1 4177 4272 -217 5 1106 3412 142 79 72 chr3 68340612 68341297 -91258486 + RMER6C LTR ERVK 1 690 0 5 1106 553 224 44 103 chr3 68341732 68341936 -91257847 - B3A SINE B2 -2 196 5 5 1106 840 119 0 0 chr3 68342199 68342317 -91257466 - B1_Mur1 SINE Alu -23 126 9 5 1106 1644 223 55 22 chr3 68342712 68343115 -91256668 - MTD LTR MaLR -3 416 1 5 1106 264 253 13 26 chr3 68343788 68343865 -91255918 - MLT1J LTR MaLR -169 343 268 5 1106 717 304 62 19 chr3 68344123 68344381 -91255402 + B4 SINE B4 24 292 0 5 1106 613 308 78 12 chr3 68344985 68345228 -91254555 - MER2 DNA MER2_type -2 343 85 5 1106 270 317 0 0 chr3 68345249 68345309 -91254474 - RSINE1 SINE B4 -6 159 100 5 1106 554 236 148 29 chr3 68345406 68345593 -91254190 - B3 SINE B2 -8 208 21 5 1106 375 132 0 0 chr3 68346380 68346448 -91253335 + (CA)n Simple_repeat Simple_repeat 1 68 0 5 1106 291 259 122 112 chr3 68346726 68346922 -91252861 - B3A SINE B2 0 198 1 5 1106 1341 82 5 16 chr3 68347467 68347654 -91252129 + B2_Mm1a SINE B2 1 185 -8 5 1106 347 322 13 57 chr3 68347659 68347677 -91252106 + ID_B1 SINE B4 72 222 -2 5 1106 579 222 43 36 chr3 68347677 68347817 -91251966 + B1F SINE Alu 9 149 0 6 1106 347 262 64 24 chr3 68348014 68348139 -91251644 + B1F2 SINE Alu 18 147 -2 6 1106 252 0 0 0 chr3 68349217 68349245 -91250538 + (TG)n Simple_repeat Simple_repeat 1 28 0 6 1106 212 122 24 0 chr3 68349246 68349287 -91250496 + (GGGA)n Simple_repeat Simple_repeat 4 45 0 6 1106 511 226 29 0 chr3 68349304 68349406 -91250377 - RSINE1 SINE B4 -60 105 1 6 1106 223 277 8 25 chr3 68349646 68349768 -91250015 + (TTTG)n Simple_repeat Simple_repeat 4 123 0 6 1106 338 272 79 29 chr3 68350063 68350203 -91249580 - MIRc SINE MIR -120 148 2 6 1106 1797 52 4 38 chr3 68350430 68350668 -91249115 + L1_Mus1 LINE L1 6337 6566 -1 6 1106 609 162 365 0 chr3 68350804 68350952 -91248831 - URR1A DNA MER1_type 0 226 25 6 1106 773 211 27 27 chr3 68350959 68351105 -91248678 + B3A SINE B2 5 150 -48 6 1106 189 0 0 0 chr3 68351112 68351133 -91248650 + (CA)n Simple_repeat Simple_repeat 2 22 0 6 1106 360 0 0 0 chr3 68351133 68351172 -91248611 + (GA)n Simple_repeat Simple_repeat 2 41 0 6 1106 374 258 9 76 chr3 68351172 68351277 -91248506 + ID_B1 SINE B4 79 176 -48 6 1106 612 173 35 43 chr3 68351183 68351298 -91248485 + PB1D9 SINE Alu 6 119 -1 6 1106 351 0 0 0 chr3 68351391 68351430 -91248353 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 6 1106 770 284 22 11 chr3 68351445 68351630 -91248153 - U2 snRNA snRNA -1 187 1 6 1106 311 362 51 0 chr3 68351816 68351954 -91247829 - L1ME1 LINE L1 -1 6178 6034 6 1106 491 278 89 21 chr3 68351972 68352207 -91247576 - L1M4 LINE L1 -921 5225 4975 6 1106 189 74 0 0 chr3 68352297 68352324 -91247459 + (GTTTG)n Simple_repeat Simple_repeat 2 28 0 6 1106 830 290 50 67 chr3 68352324 68352745 -91247038 - L1M4 LINE L1 -1203 4943 4530 6 1106 340 248 19 13 chr3 68352789 68352944 -91246839 + (TATAA)n Simple_repeat Simple_repeat 5 160 0 6 1106 1327 201 154 36 chr3 68353072 68353429 -91246354 - MTD LTR MaLR -8 411 13 6 1106 1366 230 138 3 chr3 68353626 68353997 -91245786 - MTC LTR MaLR 0 421 1 6 1106 700 319 112 19 chr3 68354222 68354535 -91245248 + LTR16A LTR ERVL 11 352 -99 6 1106 558 306 105 81 chr3 68354885 68355219 -91244564 - MTE2a LTR MaLR 0 379 35 6 1106 995 140 161 30 chr3 68355219 68355418 -91244365 + URR1B DNA MER1_type 1 225 0 6 1106 558 306 105 81 chr3 68355418 68355453 -91244330 - MTE2a LTR MaLR -345 34 1 6 1106 393 328 21 82 chr3 68355453 68355757 -91244026 + MTEa LTR MaLR 84 379 0 6 1106 267 260 130 0 chr3 68356142 68356242 -91243541 - PB1D7 SINE Alu -7 113 1 6 1106 492 314 32 13 chr3 68356745 68356903 -91242880 + B4 SINE B4 114 274 -18 6 1106 387 0 0 0 chr3 68357772 68357815 -91241968 + (TA)n Simple_repeat Simple_repeat 1 43 0 6 1106 339 25 0 0 chr3 68357815 68357854 -91241929 + (CA)n Simple_repeat Simple_repeat 2 41 0 6 1106 312 27 0 0 chr3 68357858 68357895 -91241888 + (TG)n Simple_repeat Simple_repeat 1 37 0 6 1106 358 215 276 48 chr3 68357955 68358165 -91241618 - MLT1F1 LTR MaLR -5 564 307 6 1106 429 304 167 58 chr3 68359594 68359673 -91240110 - L2 LINE L2 -535 2884 2799 6 1106 243 0 0 0 chr3 68359673 68359700 -91240083 + (TG)n Simple_repeat Simple_repeat 2 28 0 6 1106 429 304 167 58 chr3 68359700 68360087 -91239696 - L2 LINE L2 -621 2798 2367 6 1106 302 341 131 22 chr3 68360236 68360419 -91239364 + MER3 DNA MER1_type 2 204 -5 6 1106 215 272 173 0 chr3 68360639 68360720 -91239063 - L2 LINE L2 -1449 1970 1876 6 1106 369 313 208 18 chr3 68360720 68360941 -91238842 - L2 LINE L2 -1998 1421 1159 6 1106 1390 270 30 35 chr3 68361135 68361504 -91238279 + MTEa LTR MaLR 1 367 -12 6 1106 342 207 0 0 chr3 68361648 68361706 -91238077 - ID4 SINE ID -14 69 12 6 1106 217 329 51 38 chr3 68361785 68361864 -91237919 + RSINE1 SINE B4 1 80 -85 6 1106 871 219 0 59 chr3 68361799 68361969 -91237814 + B3A SINE B2 15 174 -24 6 1106 243 0 0 0 chr3 68361982 68362009 -91237774 + (CA)n Simple_repeat Simple_repeat 2 28 0 6 1106 1510 201 87 6 chr3 68362123 68362469 -91237314 + ORR1D1 LTR MaLR 1 374 0 6 1106 724 297 67 32 chr3 68363154 68363436 -91236347 + B4A SINE B4 1 292 0 6 1106 191 298 73 55 chr3 68364300 68364410 -91235373 - L2b LINE L2 -1 3425 3314 6 1106 193 277 46 0 chr3 68364569 68364634 -91235149 - L2b LINE L2 -309 3066 2999 6 1106 322 334 85 95 chr3 68364653 68364970 -91234813 - ORR1E LTR MaLR -1 358 45 6 1106 25 31 0 0 chr3 68365925 68365957 -91233826 + AT_rich Low_complexity Low_complexity 1 32 0 6 1106 389 278 98 64 chr3 68365986 68366251 -91233532 + B4 SINE B4 1 274 -18 6 1106 348 236 56 0 chr3 68366627 68366699 -91233084 - ID_B1 SINE B4 -9 215 140 6 1106 324 158 0 0 chr3 68367036 68367093 -91232690 + (CAT)n Simple_repeat Simple_repeat 3 59 0 6 1106 477 0 0 0 chr3 68367327 68367380 -91232403 + (TC)n Simple_repeat Simple_repeat 1 53 0 6 1106 288 70 0 0 chr3 68369979 68370022 -91229761 + (TG)n Simple_repeat Simple_repeat 2 44 0 6 1106 261 57 0 0 chr3 68370027 68370062 -91229721 + (TCTG)n Simple_repeat Simple_repeat 2 36 0 6 1106 620 195 17 17 chr3 68370105 68370220 -91229563 - B3 SINE B2 -101 115 1 6 1106 474 287 40 58 chr3 68370599 68370773 -91229010 - MLT1D LTR MaLR -3 502 332 6 1106 356 0 23 0 chr3 68370883 68370927 -91228856 + (TG)n Simple_repeat Simple_repeat 2 46 0 6 1106 237 65 0 0 chr3 68371832 68371863 -91227920 + (TA)n Simple_repeat Simple_repeat 2 32 0 6 1106 255 271 24 0 chr3 68371950 68372035 -91227748 - L1ME2z LINE L1 -281 6163 6077 6 1106 871 225 60 0 chr3 68372164 68372364 -91227419 + B3 SINE B2 1 212 -4 6 1106 756 244 162 7 chr3 68372631 68372903 -91226880 - MLT1A0 LTR MaLR 0 365 52 6 1106 240 35 0 0 chr3 68373012 68373041 -91226742 + (TTTG)n Simple_repeat Simple_repeat 3 31 0 6 1106 303 327 95 0 chr3 68373173 68373277 -91226506 - B1F SINE Alu -3 124 3 6 1106 608 106 0 113 chr3 68373306 68373509 -91226274 + (TG)n Simple_repeat Simple_repeat 1 180 0 6 1106 343 250 191 23 chr3 68373560 68373583 -91226200 - RSINE1 SINE B4 -2 163 141 6 1106 1311 84 0 0 chr3 68373583 68373942 -91225841 + (TG)n Simple_repeat Simple_repeat 1 359 0 6 1106 343 250 191 23 chr3 68373942 68374048 -91225735 - RSINE1 SINE B4 -25 140 12 6 1106 27 29 0 0 chr3 68374074 68374108 -91225675 + AT_rich Low_complexity Low_complexity 1 34 0 6 1106 225 0 0 0 chr3 68374486 68374511 -91225272 + (A)n Simple_repeat Simple_repeat 1 25 0 6 1106 396 0 0 0 chr3 68374570 68374614 -91225169 + (TG)n Simple_repeat Simple_repeat 2 45 0 6 1106 491 233 0 0 chr3 68375214 68375304 -91224479 + RSINE1 SINE B4 12 101 -64 6 1106 22 56 0 0 chr3 68375848 68375884 -91223899 + AT_rich Low_complexity Low_complexity 1 36 0 6 1106 23 0 0 0 chr3 68378388 68378411 -91221372 + GC_rich Low_complexity Low_complexity 1 23 0 6 1106 180 0 0 0 chr3 68378411 68378431 -91221352 + (T)n Simple_repeat Simple_repeat 1 20 0 6 1106 363 285 11 0 chr3 68378514 68378627 -91221156 - PB1D7 SINE Alu 0 120 2 6 1106 253 355 85 14 chr3 68378847 68379130 -91220653 + L2c LINE L2 2733 3035 -384 6 1106 235 321 64 28 chr3 68380815 68380924 -91218859 + L2c LINE L2 3266 3378 -9 6 1106 1021 108 18 0 chr3 68381674 68381840 -91217943 + (TTTC)n Simple_repeat Simple_repeat 4 172 0 6 1106 234 91 0 0 chr3 68381840 68381873 -91217910 + (TCCC)n Simple_repeat Simple_repeat 3 35 0 6 1106 260 277 15 0 chr3 68381950 68382015 -91217768 - ID4 SINE ID -17 66 1 6 1106 297 299 0 13 chr3 68382031 68382109 -91217674 - PB1 SINE Alu -40 87 11 6 1106 234 271 0 79 chr3 68382051 68382127 -91217656 - B4A SINE B4 -141 151 82 6 1106 382 268 93 0 chr3 68382209 68382306 -91217477 - RSINE1 SINE B4 -51 114 9 6 1106 275 281 73 0 chr3 68384599 68384695 -91215088 - MER5A1 DNA MER1_type -39 127 25 6 1106 186 71 0 0 chr3 68384996 68385024 -91214759 + (GTTTG)n Simple_repeat Simple_repeat 2 29 0 6 1106 1165 75 7 0 chr3 68385028 68385175 -91214608 - B1_Mus1 SINE Alu 0 148 1 6 1106 218 140 52 17 chr3 68385231 68385289 -91214494 + (TA)n Simple_repeat Simple_repeat 1 60 0 6 1106 279 0 0 0 chr3 68385948 68385979 -91213804 + (A)n Simple_repeat Simple_repeat 1 31 0 6 1106 337 331 51 40 chr3 68386332 68386508 -91213275 + MIR SINE MIR 37 214 -48 6 1106 198 0 0 0 chr3 68389507 68389529 -91210254 + (A)n Simple_repeat Simple_repeat 1 22 0 6 1106 495 265 68 57 chr3 68390896 68391055 -91208728 + B3 SINE B2 1 164 -52 6 1106 411 21 0 0 chr3 68391055 68391103 -91208680 + (CA)n Simple_repeat Simple_repeat 1 48 0 6 1106 495 265 68 57 chr3 68391103 68391119 -91208664 + B3 SINE B2 165 178 -38 6 1106 460 182 7 29 chr3 68391136 68391272 -91208511 + GA-rich Low_complexity Low_complexity 3 135 0 6 1106 261 0 0 0 chr3 68391367 68391396 -91208387 + (CA)n Simple_repeat Simple_repeat 1 29 0 6 1106 877 134 0 43 chr3 68392476 68392616 -91207167 + B1_Mur1 SINE Alu 2 135 -14 6 1106 180 0 0 0 chr3 68392618 68392638 -91207145 + (CAA)n Simple_repeat Simple_repeat 2 21 0 6 1106 590 254 101 0 chr3 68392649 68392818 -91206965 - L1MB7 LINE L1 -72 6112 5927 6 1106 292 291 8 38 chr3 68394626 68394758 -91205025 + MER5A1 DNA MER1_type 39 166 0 6 1106 291 85 0 0 chr3 68394998 68395045 -91204738 + (CAGA)n Simple_repeat Simple_repeat 2 48 0 6 1106 222 135 74 37 chr3 68395050 68395104 -91204679 + (CAGAGA)n Simple_repeat Simple_repeat 2 57 0 6 1106 244 196 78 0 chr3 68395395 68395446 -91204337 - B2_Mm2 SINE B2 -137 58 4 6 1106 377 339 12 12 chr3 68397514 68397684 -91202099 + L1M5 LINE L1 5531 5700 -424 6 1106 597 120 0 0 chr3 68397822 68397914 -91201869 + (GA)n Simple_repeat Simple_repeat 1 92 0 6 1106 381 224 70 63 chr3 68398843 68398986 -91200797 + MER3 DNA MER1_type 37 180 -29 6 1106 1140 156 96 14 chr3 68400700 68400908 -91198875 + URR1A DNA MER1_type 2 226 0 6 1106 456 51 0 0 chr3 68401842 68401901 -91197882 + (TG)n Simple_repeat Simple_repeat 2 60 0 7 1106 271 324 50 34 chr3 68401983 68402245 -91197538 - HAL1 LINE L1 -108 2399 2134 7 1106 2531 131 5 56 chr3 68402287 68402716 -91197067 - MTB_Mm LTR MaLR 0 407 1 7 1106 1512 59 5 0 chr3 68402814 68403000 -91196783 - B2_Mm1t SINE B2 -5 188 2 7 1106 259 327 113 19 chr3 68403004 68403269 -91196514 - L1M5 LINE L1 -473 5767 5478 7 1106 342 240 81 14 chr3 68403453 68403601 -91196182 - L1M5 LINE L1 -906 5240 5083 7 1106 538 266 28 14 chr3 68403604 68403745 -91196038 + ID_B1 SINE B4 82 224 0 7 1106 445 261 63 48 chr3 68404136 68404325 -91195458 - L1M5 LINE L1 -1471 4675 4484 7 1106 225 156 44 0 chr3 68404450 68404495 -91195288 - ID SINE ID -154 70 24 7 1106 528 174 42 25 chr3 68404607 68404725 -91195058 - PB1D9 SINE Alu 0 120 1 7 1106 511 304 122 48 chr3 68404738 68405549 -91194234 - L1M5 LINE L1 -1917 4229 3359 7 1106 194 330 68 0 chr3 68405701 68405789 -91193994 + L2a LINE L2 3128 3221 -205 7 1106 855 171 14 0 chr3 68406607 68406753 -91193030 - B1_Mur1 SINE Alu 0 149 2 7 1106 239 270 165 0 chr3 68407715 68407830 -91191953 + B1F1 SINE Alu 1 134 -15 7 1106 501 17 0 0 chr3 68409281 68409339 -91190444 + (TC)n Simple_repeat Simple_repeat 1 58 0 7 1106 198 0 0 0 chr3 68409339 68409361 -91190422 + (C)n Simple_repeat Simple_repeat 1 22 0 7 1106 354 235 60 29 chr3 68410900 68411058 -91188725 + MIR SINE MIR 23 188 -80 7 1106 772 249 194 29 chr3 68411296 68411647 -91188136 - Lx8 LINE L1 -5 7468 7060 7 1106 3223 46 18 3 chr3 68411805 68412197 -91187586 - MTB LTR MaLR 0 400 3 7 1106 316 128 0 0 chr3 68412220 68412267 -91187516 - B3 SINE B2 -167 49 3 7 1106 391 273 75 15 chr3 68413229 68413363 -91186420 - RSINE1 SINE B4 -19 146 5 7 1106 252 0 0 0 chr3 68413468 68413496 -91186287 + (TG)n Simple_repeat Simple_repeat 1 28 0 7 1106 204 288 9 46 chr3 68413533 68413642 -91186141 + T-rich Low_complexity Low_complexity 3 107 0 7 1106 1372 40 0 10 chr3 68414380 68414584 -91185199 + (GAAA)n Simple_repeat Simple_repeat 1 202 0 7 1106 432 0 0 0 chr3 68415113 68415161 -91184622 + (GGAA)n Simple_repeat Simple_repeat 1 48 0 7 1106 869 267 78 27 chr3 68416199 68416457 -91183326 + B4A SINE B4 2 272 -20 7 1106 252 0 0 0 chr3 68416498 68416526 -91183257 + (CA)n Simple_repeat Simple_repeat 1 28 0 7 1106 1239 84 67 0 chr3 68416653 68416832 -91182951 - B2_Mm1a SINE B2 -2 191 1 7 1106 216 338 0 0 chr3 68416966 68417034 -91182749 - ID4 SINE ID -8 75 8 7 1106 316 209 135 10 chr3 68417046 68417144 -91182639 - PB1D10 SINE Alu -8 109 4 7 1106 546 63 0 0 chr3 68417663 68417742 -91182041 + (TG)n Simple_repeat Simple_repeat 2 80 0 7 1107 263 151 208 0 chr3 68420156 68420209 -91179574 + PB1D10 SINE Alu 44 107 -10 7 1107 1561 52 16 0 chr3 68420611 68420802 -91178981 + B2_Mm2 SINE B2 1 194 -1 7 1107 521 252 24 0 chr3 68420910 68421033 -91178750 + B1F1 SINE Alu 1 126 -23 7 1107 263 50 50 0 chr3 68422779 68422819 -91176964 + (TTTTC)n Simple_repeat Simple_repeat 4 45 0 7 1107 621 190 6 150 chr3 68423630 68423803 -91175980 - B1_Mus1 SINE Alu 0 148 1 7 1107 225 241 95 12 chr3 68424519 68424603 -91175180 + B4 SINE B4 63 153 -139 7 1107 890 263 106 60 chr3 68425402 68425799 -91173984 - MTD LTR MaLR 0 419 5 7 1107 180 0 0 0 chr3 68426284 68426304 -91173479 + (TATG)n Simple_repeat Simple_repeat 2 21 0 7 1107 519 17 0 0 chr3 68426324 68426384 -91173399 + (TAGA)n Simple_repeat Simple_repeat 3 62 0 7 1107 423 0 0 0 chr3 68426403 68426450 -91173333 + (TG)n Simple_repeat Simple_repeat 1 47 0 7 1107 393 329 35 23 chr3 68426516 68426690 -91173093 - B4A SINE B4 -116 176 1 7 1107 457 261 15 7 chr3 68427438 68427573 -91172210 - MER5B DNA MER1_type -9 169 34 7 1107 186 291 64 118 chr3 68427834 68428021 -91171762 + L2b LINE L2 3178 3354 -21 7 1107 213 121 0 0 chr3 68429943 68429976 -91169807 + (T)n Simple_repeat Simple_repeat 1 33 0 7 1107 297 367 37 37 chr3 68430698 68430885 -91168898 + Lx8 LINE L1 7086 7272 -201 7 1107 560 285 20 7 chr3 68431851 68432003 -91167780 - RSINE1 SINE B4 -10 155 2 7 1107 3352 40 0 5 chr3 68432707 68433105 -91166678 - MTA_Mm LTR MaLR 0 396 1 7 1107 239 237 34 0 chr3 68433751 68433810 -91165973 - L1_Rod LINE L1 -19 5828 5768 7 1107 250 215 30 15 chr3 68434783 68434849 -91164934 + MLT1J2 LTR MaLR 252 318 -130 7 1107 1087 159 53 99 chr3 68436311 68436633 -91163150 - Lx9 LINE L1 0 7644 7338 7 1107 553 241 51 0 chr3 68438582 68438719 -91161064 + B1F1 SINE Alu 3 146 -3 7 1107 533 312 63 26 chr3 68438739 68438930 -91160853 + ID_B1 SINE B4 23 220 -4 7 1107 246 32 0 0 chr3 68439641 68439672 -91160111 + (TTCC)n Simple_repeat Simple_repeat 3 33 0 7 1107 190 276 119 82 chr3 68439725 68439859 -91159924 + L2c LINE L2 3249 3387 0 7 1107 562 246 49 0 chr3 68440037 68440159 -91159624 - RSINE1 SINE B4 -36 129 2 7 1107 210 171 0 0 chr3 68441299 68441340 -91158443 + (CATATA)n Simple_repeat Simple_repeat 2 42 0 7 1107 918 98 23 0 chr3 68442542 68442674 -91157109 + B1_Mur4 SINE Alu 4 138 -12 7 1107 23 0 0 0 chr3 68442675 68442698 -91157085 + AT_rich Low_complexity Low_complexity 1 23 0 7 1107 378 0 0 0 chr3 68443051 68443093 -91156690 + (TAA)n Simple_repeat Simple_repeat 2 43 0 7 1107 510 259 89 41 chr3 68443928 68444097 -91155686 + B4A SINE B4 5 181 -111 7 1107 265 336 60 0 chr3 68444128 68444277 -91155506 + MIR SINE MIR 79 236 -26 7 1107 330 115 0 0 chr3 68444307 68444359 -91155424 + (TAG)n Simple_repeat Simple_repeat 3 54 0 7 1107 500 264 196 26 chr3 68444564 68444793 -91154990 + B4A SINE B4 15 282 -10 7 1107 630 292 73 49 chr3 68445837 68445903 -91153880 - MER102a DNA MER1_type -15 315 252 7 1107 381 43 0 0 chr3 68445903 68445950 -91153833 + (TGG)n Simple_repeat Simple_repeat 3 49 0 7 1107 630 292 73 49 chr3 68445950 68446171 -91153612 - MER102a DNA MER1_type -79 251 21 7 1107 278 257 29 0 chr3 68446537 68446607 -91153176 + ID2 SINE ID 8 79 -4 7 1107 216 0 0 0 chr3 68447132 68447156 -91152627 + (TTTTG)n Simple_repeat Simple_repeat 5 28 0 7 1107 2473 146 42 2 chr3 68447305 68447710 -91152073 - MTC LTR MaLR 0 421 1 7 1107 739 105 0 0 chr3 68447984 68448089 -91151694 + B2_Mm2 SINE B2 2 106 -89 7 1107 186 43 0 0 chr3 68448089 68448112 -91151671 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 7 1107 195 42 0 0 chr3 68448324 68448348 -91151435 + (CA)n Simple_repeat Simple_repeat 1 24 0 7 1107 536 168 34 23 chr3 68448377 68448554 -91151229 + (CA)n Simple_repeat Simple_repeat 2 180 0 7 1107 767 159 56 35 chr3 68448969 68449112 -91150671 + B1_Mur3 SINE Alu 3 148 -1 7 1107 606 281 131 40 chr3 68449900 68450197 -91149586 - Lx8 LINE L1 -1001 6472 6149 7 1107 3971 124 37 0 chr3 68451613 68452232 -91147551 + Lx2 LINE L1 6356 6997 0 7 1107 572 300 55 11 chr3 68452402 68452584 -91147199 + ID_B1 SINE B4 29 218 -6 7 1107 2618 70 5 56 chr3 68452844 68453220 -91146563 - L1_Mus2 LINE L1 -1 6565 6209 7 1107 499 247 86 6 chr3 68453679 68453842 -91145941 + RLTR28B LTR ERVL 11 186 -295 7 1107 276 30 0 0 chr3 68453996 68454029 -91145754 + (CTG)n Simple_repeat Simple_repeat 2 34 0 7 1107 273 385 23 12 chr3 68454602 68454773 -91145010 + ORR1E LTR MaLR 25 197 -162 7 1107 464 277 36 0 chr3 68455891 68456003 -91143780 - RSINE1 SINE B4 -49 116 1 7 1107 522 272 51 7 chr3 68456072 68456209 -91143574 + ID_B1 SINE B4 79 221 -3 7 1107 624 227 0 8 chr3 68458070 68458199 -91141584 - ID_B1 SINE B4 -8 216 89 7 1107 203 305 0 0 chr3 68458484 68458543 -91141240 - L2c LINE L2 -43 3344 3286 7 1107 1110 56 0 0 chr3 68459043 68459185 -91140598 + (GGGAGA)n Simple_repeat Simple_repeat 2 143 0 7 1107 423 0 0 0 chr3 68459185 68459231 -91140552 + (GGAA)n Simple_repeat Simple_repeat 1 47 0 7 1107 250 167 83 0 chr3 68460147 68460207 -91139576 - RMER5 LTR ERV1 -128 406 342 7 1107 195 69 0 0 chr3 68460316 68460345 -91139438 + (TCTG)n Simple_repeat Simple_repeat 2 30 0 7 1107 2063 264 16 42 chr3 68460345 68460961 -91138822 - Lx9 LINE L1 -182 7462 6863 7 1107 488 221 58 58 chr3 68460966 68461120 -91138663 - RMER5 LTR ERV1 -368 166 13 7 1107 623 304 24 31 chr3 68461131 68461386 -91138397 - B4A SINE B4 -35 257 5 7 1107 21 0 0 0 chr3 68462244 68462265 -91137518 + AT_rich Low_complexity Low_complexity 1 21 0 7 1107 707 203 16 53 chr3 68462347 68462534 -91137249 - RMER5 LTR ERV1 -1 533 354 7 1107 499 156 0 0 chr3 68463298 68463406 -91136377 + ORR1A2 LTR MaLR 1 108 -238 7 1107 246 94 0 36 chr3 68463407 68463446 -91136337 + ORR1A2 LTR MaLR 44 80 -287 7 1107 1886 100 13 20 chr3 68463446 68463784 -91135999 + ORR1A2 LTR MaLR 1 327 0 7 1107 189 357 15 38 chr3 68464356 68464487 -91135296 + MIR SINE MIR 134 261 -1 7 1107 422 304 29 73 chr3 68465540 68465746 -91134037 - RMER30 DNA MER1_type -4 198 2 7 1107 516 26 25 25 chr3 68466034 68466113 -91133670 + (TTTC)n Simple_repeat Simple_repeat 2 80 0 7 1107 189 147 0 0 chr3 68467267 68467301 -91132482 + (GGAA)n Simple_repeat Simple_repeat 2 35 0 7 1107 419 236 11 0 chr3 68467406 68467495 -91132288 + PB1D9 SINE Alu 2 91 -29 7 1107 609 14 0 0 chr3 68467502 68467572 -91132211 + (GAA)n Simple_repeat Simple_repeat 2 71 0 7 1107 637 309 140 29 chr3 68467734 68468041 -91131742 - MTE2b LTR MaLR -28 351 11 7 1107 461 269 29 0 chr3 68468045 68468149 -91131634 + RSINE1 SINE B4 45 151 -14 7 1107 611 284 98 62 chr3 68468242 68468467 -91131316 + MLT2B1 LTR ERVL 56 288 -232 7 1107 340 274 0 21 chr3 68469348 68469445 -91130338 - B1F1 SINE Alu -18 131 37 7 1107 1140 55 0 40 chr3 68469628 68469643 -91130140 - B1_Mm SINE Alu 0 147 138 8 1107 302 0 26 0 chr3 68469643 68469681 -91130102 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 8 1107 1140 55 0 40 chr3 68469681 68469817 -91129966 - B1_Mm SINE Alu -10 137 2 8 1107 558 333 12 74 chr3 68469827 68470083 -91129700 - MLT2B2 LTR ERVL -61 454 215 8 1107 186 167 0 0 chr3 68471252 68471288 -91128495 + (TG)n Simple_repeat Simple_repeat 2 37 0 8 1107 3178 186 75 45 chr3 68471326 68472104 -91127679 - RLTR40 LTR ERVK -16 801 1 8 1107 3900 175 144 25 chr3 68472253 68472849 -91126934 - ORR1C2-int LTR MaLR -117 1141 447 8 1107 777 11 0 0 chr3 68472849 68472939 -91126844 + (TG)n Simple_repeat Simple_repeat 2 91 0 8 1107 3900 175 144 25 chr3 68472939 68473362 -91126421 - ORR1C2-int LTR MaLR -812 446 3 8 1107 1619 193 85 0 chr3 68473376 68473729 -91126054 - ORR1C2 LTR MaLR -1 383 1 8 1107 1822 100 4 4 chr3 68473729 68473999 -91125784 - MTC LTR MaLR -8 413 144 8 1107 37 0 0 0 chr3 68474146 68474183 -91125600 + AT_rich Low_complexity Low_complexity 1 37 0 8 1107 340 275 208 85 chr3 68474520 68474814 -91124969 - Lx8 LINE L1 -443 7030 6701 8 1107 1210 283 88 8 chr3 68474815 68475203 -91124580 - Lx8 LINE L1 -880 6593 6175 8 1107 613 229 56 21 chr3 68475214 68475357 -91124426 - B1_Mur1 SINE Alu 0 149 2 8 1107 44 20 0 0 chr3 68475364 68475415 -91124368 + AT_rich Low_complexity Low_complexity 1 51 0 8 1107 23 0 0 0 chr3 68475791 68475814 -91123969 + AT_rich Low_complexity Low_complexity 1 23 0 8 1107 267 205 48 0 chr3 68475844 68475913 -91123870 + (TA)n Simple_repeat Simple_repeat 2 74 0 8 1107 243 0 0 0 chr3 68475913 68475940 -91123843 + (TAGA)n Simple_repeat Simple_repeat 4 30 0 8 1107 267 205 48 0 chr3 68475940 68475953 -91123830 + (TA)n Simple_repeat Simple_repeat 1 13 0 8 1107 245 322 72 17 chr3 68476295 68476475 -91123308 + LTR73 LTR ERV1 281 470 -102 8 1107 886 151 0 25 chr3 68476934 68477097 -91122686 - B3 SINE B2 0 216 58 8 1107 343 301 95 16 chr3 68477102 68477144 -91122639 + L1MEe LINE L1 866 919 -5165 8 1107 351 0 0 0 chr3 68477144 68477183 -91122600 + (CA)n Simple_repeat Simple_repeat 2 40 0 8 1107 180 0 0 0 chr3 68477183 68477202 -91122581 + (TA)n Simple_repeat Simple_repeat 2 21 0 8 1107 343 301 95 16 chr3 68477202 68477332 -91122451 + L1MEe LINE L1 920 1056 -5028 8 1107 3203 56 2 5 chr3 68477332 68477729 -91122054 + MTA_Mm LTR MaLR 1 396 0 8 1107 343 301 95 16 chr3 68477729 68477797 -91121986 + L1MEe LINE L1 1057 1125 -4959 8 1107 352 353 56 0 chr3 68477893 68478142 -91121641 + L1MEe LINE L1 1345 1607 -4401 8 1107 472 295 16 16 chr3 68478145 68478269 -91121514 + B1_Mur1 SINE Alu 21 144 -5 8 1107 362 23 0 0 chr3 68478290 68478333 -91121450 + (TA)n Simple_repeat Simple_repeat 2 44 0 8 1107 645 139 0 0 chr3 68478333 68478441 -91121342 + (CA)n Simple_repeat Simple_repeat 2 109 0 8 1107 260 306 40 92 chr3 68478816 68478989 -91120794 + MIR3 SINE MIR 17 180 -28 8 1107 429 153 35 0 chr3 68479592 68479677 -91120106 - B3 SINE B2 -128 88 1 8 1107 423 0 0 0 chr3 68479736 68479783 -91120000 + (GTTTG)n Simple_repeat Simple_repeat 2 48 0 8 1107 256 269 79 53 chr3 68480004 68480118 -91119665 - PB1D10 SINE Alu 0 117 1 8 1107 21 36 0 0 chr3 68480786 68480814 -91118969 + GC_rich Low_complexity Low_complexity 1 28 0 8 1107 263 313 36 0 chr3 68482037 68482120 -91117663 - RMER1C Other Other -14 1328 1243 8 1107 3010 41 7 81 chr3 68483993 68484414 -91115369 + RLTR10 LTR ERVK 1 390 0 8 1107 16940 29 6 3 chr3 68484424 68486362 -91113421 + RLTR10-int LTR ERVK 41 1984 -3 8 1107 3010 41 7 81 chr3 68486364 68486785 -91112998 + RLTR10 LTR ERVK 1 390 0 8 1107 421 152 178 20 chr3 68486832 68486933 -91112850 - PB1D10 SINE Alu 0 117 1 8 1107 293 323 116 15 chr3 68487526 68487724 -91112059 + MIR SINE MIR 37 254 -8 8 1107 867 177 0 0 chr3 68487915 68488062 -91111721 + B1_Mus1 SINE Alu 1 147 -1 8 1107 342 0 0 0 chr3 68488199 68488237 -91111546 + (GTTTG)n Simple_repeat Simple_repeat 2 39 0 8 1107 721 258 153 25 chr3 68489342 68489668 -91110115 - Lx9 LINE L1 0 7644 7277 8 1107 238 279 125 60 chr3 68489704 68489872 -91109911 - B3A SINE B2 -19 179 1 8 1107 349 242 10 20 chr3 68490133 68490234 -91109549 - MTEb LTR MaLR 0 379 280 8 1107 1055 65 51 0 chr3 68490353 68490491 -91109292 + B1_Mus2 SINE Alu 2 146 -1 8 1107 331 323 15 30 chr3 68490658 68490789 -91108994 - MLT2B3 LTR ERVL -425 129 1 8 1107 474 101 0 0 chr3 68491074 68491143 -91108640 + (TTTC)n Simple_repeat Simple_repeat 2 70 0 8 1107 319 361 111 20 chr3 68491550 68491748 -91108035 + L1MEg LINE L1 241 456 -5628 8 1107 468 0 0 0 chr3 68491797 68491849 -91107934 + (TG)n Simple_repeat Simple_repeat 1 52 0 8 1107 537 134 0 0 chr3 68491849 68491961 -91107822 + (GA)n Simple_repeat Simple_repeat 2 113 0 8 1107 380 291 78 125 chr3 68491961 68492561 -91107222 + L1MEg LINE L1 573 1144 -4940 8 1107 234 0 0 0 chr3 68492716 68492742 -91107041 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 8 1107 234 221 120 34 chr3 68492918 68493035 -91106748 - ID_B1 SINE B4 -8 216 90 8 1107 242 193 35 0 chr3 68493170 68493227 -91106556 + (CAAA)n Simple_repeat Simple_repeat 3 61 0 8 1107 506 293 68 27 chr3 68493328 68493549 -91106234 + Lx8 LINE L1 6922 7151 -322 8 1107 787 217 60 15 chr3 68497027 68497228 -91102555 + B3 SINE B2 7 216 0 8 1107 180 0 0 0 chr3 68498219 68498239 -91101544 + (CAA)n Simple_repeat Simple_repeat 2 21 0 8 1107 415 325 0 9 chr3 68498387 68498502 -91101281 + PB1D9 SINE Alu 1 114 -6 8 1107 787 245 122 35 chr3 68498527 68498781 -91101002 + B4A SINE B4 16 291 -1 8 1107 759 144 8 0 chr3 68498902 68499027 -91100756 + B1_Mur4 SINE Alu 5 130 -20 8 1107 306 125 0 0 chr3 68499030 68499078 -91100705 + (ATG)n Simple_repeat Simple_repeat 3 50 0 8 1107 188 250 191 21 chr3 68499746 68499840 -91099943 - MIRb SINE MIR -52 216 107 8 1107 351 0 0 0 chr3 68499867 68499906 -91099877 + (GTTTG)n Simple_repeat Simple_repeat 2 40 0 8 1107 745 49 0 0 chr3 68499906 68500000 -91099783 - B1_Mm SINE Alu -7 140 47 8 1107 365 65 0 0 chr3 68500000 68500046 -91099737 - B1_Mus1 SINE Alu -102 46 1 1 1107 487 281 119 40 chr3 68500117 68500343 -91099440 + B4A SINE B4 49 292 0 2 1107 1138 203 181 23 chr3 68500689 68501037 -91098746 - MTD LTR MaLR 0 419 1 3 1107 21 0 0 0 chr3 68501488 68501509 -91098274 + AT_rich Low_complexity Low_complexity 1 21 0 4 1107 31 26 0 0 chr3 68502358 68502396 -91097387 + AT_rich Low_complexity Low_complexity 1 38 0 5 1107 428 289 0 4 chr3 68502510 68502632 -91097151 - B1_Mur2 SINE Alu -1 119 1 6 1107 1703 198 88 33 chr3 68502674 68503071 -91096712 - MTD LTR MaLR 0 419 1 7 1107 410 337 154 27 chr3 68503117 68503376 -91096407 + B4A SINE B4 1 292 0 8 1107 508 274 0 9 chr3 68504532 68504646 -91095137 + PB1D10 SINE Alu 5 117 0 9 1107 180 239 108 40 chr3 68504668 68504742 -91095041 + L2 LINE L2 1996 2074 -1345 1 1107 239 333 58 71 chr3 68504746 68504901 -91094882 + MIRb SINE MIR 95 247 -21 1 1107 206 291 88 12 chr3 68504938 68505018 -91094765 + MIRb SINE MIR 111 196 -72 1 1107 605 248 15 0 chr3 68505024 68505161 -91094622 + ID_B1 SINE B4 78 216 -8 1 1107 204 182 0 0 chr3 68505912 68505956 -91093827 + (CATG)n Simple_repeat Simple_repeat 4 47 0 1 1107 648 38 0 0 chr3 68505961 68506040 -91093743 + (CA)n Simple_repeat Simple_repeat 1 79 0 1 1107 300 214 41 82 chr3 68506044 68506141 -91093642 + PB1 SINE Alu 24 116 -11 1 1107 557 275 40 0 chr3 68506180 68506329 -91093454 - RSINE1 SINE B4 -8 157 3 1 1107 352 289 9 37 chr3 68506457 68506565 -91093218 + PB1D10 SINE Alu 13 117 0 1 1107 5255 150 3 5 chr3 68506597 68507461 -91092322 + L1_Mm LINE L1 4376 5238 -645 1 1107 2777 82 3 0 chr3 68507478 68507842 -91091941 - Lx LINE L1 -609 6045 5681 2 1107 687 192 0 0 chr3 68508008 68508180 -91091603 + (TG)n Simple_repeat Simple_repeat 1 172 0 2 1107 810 171 0 0 chr3 68508207 68508383 -91091400 + (TG)n Simple_repeat Simple_repeat 1 176 0 2 1107 498 33 0 0 chr3 68508410 68508470 -91091313 + (TG)n Simple_repeat Simple_repeat 1 60 0 2 1107 2952 161 68 0 chr3 68508809 68509351 -91090432 + Lx3C LINE L1 6396 6974 -2 2 1107 624 343 50 26 chr3 68510202 68510543 -91089240 + ORR1E LTR MaLR 1 349 -10 2 1107 503 211 105 0 chr3 68511557 68511671 -91088112 + B3A SINE B2 36 161 -37 2 1107 357 24 0 0 chr3 68511674 68511716 -91088067 + (CA)n Simple_repeat Simple_repeat 1 42 0 2 1107 252 59 0 0 chr3 68512423 68512457 -91087326 + (TTGG)n Simple_repeat Simple_repeat 2 35 0 2 1107 351 0 0 0 chr3 68512472 68512511 -91087272 + (CCCCCA)n Simple_repeat Simple_repeat 4 42 0 2 1107 765 252 102 92 chr3 68512564 68512931 -91086852 - MTEb LTR MaLR -4 375 7 2 1107 268 217 0 0 chr3 68513116 68513176 -91086607 + GA-rich Low_complexity Low_complexity 2 61 0 2 1107 3092 176 57 17 chr3 68514084 68514666 -91085117 - RMER1B Other Other 0 1066 462 3 1107 729 184 49 14 chr3 68514690 68514828 -91084955 + RLTR11A LTR ERVK 6 148 -380 3 1107 753 236 24 44 chr3 68514828 68515058 -91084725 - RLTR20A2 LTR ERVK 0 578 323 3 1107 366 123 215 0 chr3 68515062 68515127 -91084656 - RLTR20C LTR ERVK -455 79 1 3 1107 1851 177 72 6 chr3 68515127 68515489 -91084294 + RLTR11A LTR ERVK 143 528 0 3 1107 1230 276 79 73 chr3 68515492 68516212 -91083571 - RMER1B Other Other -652 690 4 3 1107 633 124 10 0 chr3 68516304 68516401 -91083382 + MTC LTR MaLR 1 98 -323 3 1107 207 0 0 0 chr3 68516411 68516434 -91083349 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 3 1107 1151 139 6 0 chr3 68516434 68516600 -91083183 - RLTR17 LTR ERVK -326 366 200 3 1107 1242 225 72 7 chr3 68516599 68516890 -91082893 + MTC LTR MaLR 104 413 -8 3 1107 673 78 265 8 chr3 68517388 68517505 -91082278 + B1_Mm SINE Alu 1 147 0 3 1107 234 0 0 0 chr3 68517505 68517531 -91082252 + (A)n Simple_repeat Simple_repeat 1 26 0 3 1107 1642 57 0 0 chr3 68518264 68518458 -91081325 + L1Md_F2 LINE L1 5393 5586 -297 3 1107 8175 51 0 3 chr3 68518459 68519452 -91080331 + L1Md_F2 LINE L1 5588 6577 -5 3 1107 285 245 0 0 chr3 68520825 68520878 -91078905 + PB1D10 SINE Alu 58 110 -7 4 1107 448 258 21 147 chr3 68520889 68521080 -91078703 + B4A SINE B4 3 169 -123 4 1107 429 327 30 6 chr3 68521063 68521232 -91078551 - B4A SINE B4 -117 175 3 4 1107 1215 68 0 0 chr3 68521518 68521665 -91078118 + B1_Mus2 SINE Alu 1 147 0 4 1107 284 247 11 0 chr3 68521682 68521771 -91078012 - L1MA5 LINE L1 -23 6277 6188 4 1107 22 35 0 0 chr3 68522174 68522203 -91077580 + AT_rich Low_complexity Low_complexity 1 29 0 4 1107 210 37 0 0 chr3 68522492 68522519 -91077264 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 4 1107 1318 86 11 21 chr3 68522521 68522712 -91077071 - B2_Mm2 SINE B2 -5 190 2 4 1107 267 307 0 0 chr3 68522747 68522822 -91076961 - MIRc SINE MIR -124 144 70 4 1107 411 303 80 35 chr3 68523328 68523651 -91076132 - MTEb LTR MaLR -11 348 12 4 1107 403 184 13 13 chr3 68525306 68525383 -91074400 + MLT1A1 LTR MaLR 299 375 -33 5 1107 431 255 140 74 chr3 68525384 68525410 -91074373 - CYRA11_Mm Unknown Y-chromosome -210 407 233 5 1107 1071 149 149 0 chr3 68525410 68525605 -91074178 + URR1A DNA MER1_type 3 226 0 5 1107 820 246 105 35 chr3 68525613 68525899 -91073884 + MTEb LTR MaLR 34 339 -40 5 1107 209 214 0 0 chr3 68525904 68525946 -91073837 + (CA)n Simple_repeat Simple_repeat 2 43 0 5 1107 2059 70 0 11 chr3 68526205 68526480 -91073303 - L1Md_F2 LINE L1 0 6582 6311 5 1107 224 346 13 13 chr3 68526548 68526627 -91073156 + ID4 SINE ID 5 83 0 5 1107 304 285 118 31 chr3 68526806 68526933 -91072850 - MER115 DNA Tip100 -72 621 484 5 1107 513 0 0 0 chr3 68527516 68527573 -91072210 + (TAGA)n Simple_repeat Simple_repeat 4 60 0 5 1107 2452 86 3 15 chr3 68527766 68528097 -91071686 - ORR1A2 LTR MaLR 0 327 1 5 1107 269 225 5 53 chr3 68528122 68528310 -91071473 + (CA)n Simple_repeat Simple_repeat 2 180 0 6 1107 37182 65 1 25 chr3 68528745 68534836 -91064947 + L1Md_T LINE L1 99 5586 -297 6 1107 8142 58 0 0 chr3 68534836 68535857 -91063926 + L1Md_T LINE L1 5587 6582 0 6 1107 2742 33 92 3 chr3 68536469 68536806 -91062977 + IAPLTR1_Mm LTR ERVK 1 367 0 6 1107 56579 23 15 6 chr3 68536806 68543221 -91056562 + IAPEz-int LTR ERVK 8 6481 0 6 1107 2937 31 45 3 chr3 68543221 68543573 -91056210 + IAPLTR1_Mm LTR ERVK 1 367 0 6 1107 222 314 37 28 chr3 68544275 68544383 -91055400 + B3A SINE B2 2 110 -88 6 1107 322 217 0 0 chr3 68544360 68544420 -91055363 + B4A SINE B4 171 230 -62 6 1107 419 325 68 56 chr3 68544673 68545028 -91054755 + MER52-int LTR ERV1 3637 3995 -3096 6 1107 963 133 78 6 chr3 68545373 68545539 -91054244 + B2_Mm2 SINE B2 1 178 -17 6 1107 350 147 15 0 chr3 68545539 68545607 -91054176 + GA-rich Low_complexity Low_complexity 2 70 0 6 1107 846 227 57 53 chr3 68546345 68546573 -91053210 + MTE2a LTR MaLR 151 379 0 6 1107 703 249 63 96 chr3 68546752 68547054 -91052729 + B4A SINE B4 1 292 0 6 1107 249 159 0 0 chr3 68547056 68547100 -91052683 + (CA)n Simple_repeat Simple_repeat 1 44 0 7 1107 1174 189 25 0 chr3 68548658 68548859 -91050924 + B3 SINE B2 1 206 -10 7 1107 2894 116 25 2 chr3 68549307 68549740 -91050043 + RMER15 LTR ERVL 1 443 -132 7 1107 319 21 20 20 chr3 68549947 68549996 -91049787 + (CAAA)n Simple_repeat Simple_repeat 2 50 0 7 1107 1353 31 15 0 chr3 68550204 68550465 -91049318 + (CACAG)n Simple_repeat Simple_repeat 1 264 0 7 1108 249 250 14 56 chr3 68551128 68551272 -91048511 + GA-rich Low_complexity Low_complexity 2 139 0 7 1108 257 234 28 35 chr3 68551271 68551413 -91048370 + (TG)n Simple_repeat Simple_repeat 1 141 0 7 1108 38006 36 0 2 chr3 68551652 68556923 -91042860 - L1Md_T LINE L1 -1 6584 1320 7 1108 2463 89 78 10 chr3 68556923 68557308 -91042475 + IAPLTR2a LTR ERVK 1 411 0 7 1108 12843 64 0 16 chr3 68557308 68558514 -91041269 - L1Md_T LINE L1 -4567 1319 36 7 1108 569 215 22 15 chr3 68558587 68558724 -91041059 + RMER15 LTR ERVL 433 570 -5 7 1108 959 244 170 0 chr3 68558727 68558957 -91040826 + RMER15-int LTR ERVL 1 269 -4730 7 1108 334 231 78 67 chr3 68558957 68559112 -91040671 + B4 SINE B4 139 292 0 7 1108 565 236 71 25 chr3 68559250 68559446 -91040337 - Lx9 LINE L1 -20 7624 7420 8 1108 317 62 0 20 chr3 68559542 68559591 -91040192 + (TG)n Simple_repeat Simple_repeat 2 49 0 8 1108 280 368 97 58 chr3 68559633 68559890 -91039893 - B4 SINE B4 -20 272 6 8 1108 30 0 0 0 chr3 68559932 68559962 -91039821 + AT_rich Low_complexity Low_complexity 1 30 0 8 1108 1706 187 55 76 chr3 68560478 68560860 -91038923 + ORR1D1 LTR MaLR 1 374 0 8 1108 731 169 0 42 chr3 68561014 68561156 -91038627 - B1_Mur1 SINE Alu -13 136 1 8 1108 275 333 93 36 chr3 68561208 68561348 -91038435 - RSINE1 SINE B4 -16 149 2 8 1108 422 245 0 0 chr3 68562006 68562100 -91037683 + B4A SINE B4 171 264 -28 8 1108 257 318 11 0 chr3 68562306 68562394 -91037389 + PB1D10 SINE Alu 29 117 0 8 1108 234 0 0 0 chr3 68562449 68562475 -91037308 + (T)n Simple_repeat Simple_repeat 1 26 0 8 1108 489 17 0 0 chr3 68562842 68562900 -91036883 + (TG)n Simple_repeat Simple_repeat 2 59 0 9 1108 234 289 95 95 chr3 68562900 68563068 -91036715 - LTR48 LTR ERV1 -619 168 1 9 1108 319 96 0 19 chr3 68563786 68563839 -91035944 + ORR1D1 LTR MaLR 1 52 -332 9 1108 870 178 51 32 chr3 68564016 68564269 -91035514 + ORR1D1 LTR MaLR 52 384 0 9 1108 209 98 73 0 chr3 68564698 68564739 -91035044 + T-rich Low_complexity Low_complexity 3 46 0 9 1108 223 245 19 0 chr3 68564746 68564799 -91034984 + (TG)n Simple_repeat Simple_repeat 1 54 0 9 1108 338 244 91 54 chr3 68564814 68565030 -91034753 - ID_B1 SINE B4 -15 277 27 9 1108 666 0 0 0 chr3 68565030 68565104 -91034679 + (CCCCAG)n Simple_repeat Simple_repeat 6 79 0 9 1108 422 267 74 6 chr3 68565490 68565652 -91034131 + MER92B LTR ERV1 56 228 -408 9 1108 275 0 29 0 chr3 68565902 68565937 -91033846 + (CCCCCA)n Simple_repeat Simple_repeat 6 41 0 9 1108 282 211 28 50 chr3 68566103 68566204 -91033579 + PB1D10 SINE Alu 17 120 0 9 1108 397 250 88 72 chr3 68567602 68567783 -91032000 - B3A SINE B2 -14 184 1 1 1108 3595 15 2 0 chr3 68567937 68568332 -91031451 + MTA_Mm LTR MaLR 1 396 0 1 1108 192 77 0 0 chr3 68568532 68568558 -91031225 + (TCTG)n Simple_repeat Simple_repeat 4 29 0 1 1108 257 266 18 0 chr3 68569198 68569276 -91030507 - MIR SINE MIR -153 115 33 1 1108 370 250 0 0 chr3 68570070 68570146 -91029637 + RSINE1 SINE B4 30 105 -60 1 1108 674 225 28 21 chr3 68570185 68570330 -91029453 + B3 SINE B2 70 215 -1 1 1108 26 0 0 0 chr3 68570431 68570457 -91029326 + AT_rich Low_complexity Low_complexity 1 26 0 1 1108 246 293 63 24 chr3 68570542 68570668 -91029115 - MurSatRep1 Unknown Unknown -1838 299 169 1 1108 230 240 82 10 chr3 68571097 68571194 -91028589 - MIR SINE MIR -53 209 106 1 1108 209 57 0 28 chr3 68571348 68571384 -91028399 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 1 1108 578 178 28 9 chr3 68571761 68571869 -91027914 - RLTR18B LTR ERVK -24 488 379 1 1108 201 176 0 0 chr3 68571885 68571919 -91027864 + (ATG)n Simple_repeat Simple_repeat 3 36 0 1 1108 7112 186 55 23 chr3 68571919 68573100 -91026683 - Lx5 LINE L1 -6 7044 5820 1 1108 216 0 0 0 chr3 68573100 68573124 -91026659 + (TTTG)n Simple_repeat Simple_repeat 3 26 0 1 1108 7112 130 54 0 chr3 68573124 68573389 -91026394 - Lx5 LINE L1 -49 5828 5547 1 1108 5246 163 280 8 chr3 68573386 68574723 -91025060 - Lx5 LINE L1 -1869 4008 2309 1 1108 3114 160 177 15 chr3 68574709 68575329 -91024454 + L1_Mur2 LINE L1 2747 3488 -2389 1 1108 228 67 0 0 chr3 68575329 68575359 -91024424 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 1 1108 3114 160 177 15 chr3 68575359 68575454 -91024329 + L1_Mur2 LINE L1 3489 3578 -2299 1 1108 24 0 0 0 chr3 68577742 68577766 -91022017 + AT_rich Low_complexity Low_complexity 1 24 0 1 1108 635 246 85 54 chr3 68577844 68578067 -91021716 - B4A SINE B4 -62 230 1 1 1108 783 32 0 0 chr3 68578388 68578482 -91021301 + (TC)n Simple_repeat Simple_repeat 2 95 0 1 1108 459 0 0 0 chr3 68578482 68578532 -91021251 + (TG)n Simple_repeat Simple_repeat 2 52 0 1 1108 255 93 0 0 chr3 68579240 68579283 -91020500 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 1 1108 243 0 0 0 chr3 68579360 68579387 -91020396 + (CA)n Simple_repeat Simple_repeat 1 27 0 1 1108 912 234 141 34 chr3 68579875 68580202 -91019581 - MLT1A0 LTR MaLR -3 362 1 1 1108 261 265 47 93 chr3 68580467 68580596 -91019187 - PB1 SINE Alu 0 127 5 1 1108 31 76 0 0 chr3 68581066 68581132 -91018651 + AT_rich Low_complexity Low_complexity 1 66 0 1 1108 269 119 0 0 chr3 68581165 68581207 -91018576 + B2_Mm2 SINE B2 1 42 -153 1 1108 320 248 53 46 chr3 68581455 68581586 -91018197 + RLTR13C1 LTR ERVK 812 943 -40 1 1108 1469 52 18 18 chr3 68581624 68581841 -91017942 - MTB LTR MaLR -183 217 1 1 1108 298 301 21 11 chr3 68583062 68583156 -91016627 - PB1D10 SINE Alu -18 99 5 1 1108 2213 144 34 137 chr3 68584216 68584713 -91015070 - RLTR41 LTR ERV1 0 446 1 1 1108 183 316 90 20 chr3 68584915 68585015 -91014768 - L2b LINE L2 -41 3334 3228 1 1108 796 132 8 8 chr3 68585785 68585915 -91013868 + B3 SINE B2 1 130 -86 1 1108 25 0 0 0 chr3 68585960 68585985 -91013798 + AT_rich Low_complexity Low_complexity 1 25 0 1 1108 321 219 219 0 chr3 68585988 68586084 -91013699 + RSINE1 SINE B4 28 144 -21 1 1108 234 331 20 61 chr3 68586619 68586767 -91013016 + MER112 DNA MER1_type 5 146 -115 1 1108 310 246 148 35 chr3 68586885 68587087 -91012696 - RMER20B LTR ERVK -91 425 199 1 1108 261 329 0 0 chr3 68587693 68587763 -91012020 - RMER30 DNA MER1_type -126 76 7 1 1108 230 263 31 21 chr3 68587976 68588073 -91011710 - L1MC5 LINE L1 -26 7935 7838 1 1108 601 76 19 0 chr3 68588153 68588258 -91011525 + (TG)n Simple_repeat Simple_repeat 1 107 0 1 1108 2052 143 9 54 chr3 68589563 68589992 -91009791 - RMER17C LTR ERVK 0 410 1 1 1108 189 0 0 0 chr3 68592655 68592676 -91007107 + (TTCA)n Simple_repeat Simple_repeat 2 22 0 1 1108 683 226 57 41 chr3 68592678 68592872 -91006911 - B3A SINE B2 0 198 2 1 1108 286 309 64 0 chr3 68593547 68593657 -91006126 - MLT1H1 LTR MaLR -429 126 10 1 1108 2300 102 15 3 chr3 68594512 68594837 -91004946 + ORR1A4 LTR MaLR 1 329 0 1 1108 558 246 46 0 chr3 68594958 68595088 -91004695 - B1F SINE Alu -13 136 1 1 1108 253 329 0 25 chr3 68596528 68596609 -91003174 - ID2 SINE ID 0 83 5 1 1108 309 297 19 29 chr3 68596646 68596750 -91003033 - PB1D10 SINE Alu -8 109 7 1 1108 871 177 7 0 chr3 68597408 68597543 -91002240 + B1_Mus1 SINE Alu 1 135 -13 1 1108 270 56 0 0 chr3 68597543 68597579 -91002204 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 1 1108 871 177 7 0 chr3 68597579 68597590 -91002193 + B1_Mus1 SINE Alu 136 146 -2 1 1108 43 20 0 0 chr3 68598839 68598889 -91000894 + AT_rich Low_complexity Low_complexity 1 50 0 1 1108 1389 160 80 58 chr3 68598895 68599221 -91000562 - Lx7 LINE L1 0 7696 7364 1 1108 2195 92 13 6 chr3 68599225 68599542 -91000241 + ORR1A2 LTR MaLR 1 319 -8 1 1108 372 22 0 0 chr3 68599576 68599621 -91000162 + (CA)n Simple_repeat Simple_repeat 1 45 0 1 1108 3146 200 17 9 chr3 68599642 68600278 -90999505 - Lx7 LINE L1 -339 7357 6717 1 1108 4610 194 69 26 chr3 68600277 68601427 -90998356 + Lx7 LINE L1 5475 6708 -988 1 1108 3469 47 126 0 chr3 68602435 68602881 -90996902 + RLTR44C LTR ERVK 1 502 0 1 1108 1518 115 23 42 chr3 68602881 68603145 -90996638 + RLTR44-int LTR ERVK 1 259 -2553 1 1108 1293 14 0 0 chr3 68603189 68603335 -90996448 + B1_Mus2 SINE Alu 2 147 0 1 1108 243 0 0 0 chr3 68603335 68603362 -90996421 + (A)n Simple_repeat Simple_repeat 1 27 0 1 1108 4306 55 30 54 chr3 68603383 68603979 -90995804 + RLTR44-int LTR ERVK 813 1394 -1418 1 1108 10809 30 6 2 chr3 68603970 68605219 -90994564 + RLTR44-int LTR ERVK 1559 2812 0 1 1108 3303 60 145 0 chr3 68605219 68605654 -90994129 + RLTR44C LTR ERVK 1 498 -4 1 1108 430 322 28 22 chr3 68605671 68605849 -90993934 + L1MEf LINE L1 596 774 -5426 1 1108 393 245 11 11 chr3 68606014 68606109 -90993674 + PB1D10 SINE Alu 21 115 -2 1 1108 460 242 123 39 chr3 68606109 68606346 -90993437 + L1MEf LINE L1 922 1176 -5024 1 1108 246 232 101 0 chr3 68606641 68606710 -90993073 + L1M5 LINE L1 5695 5770 -354 1 1108 233 105 0 95 chr3 68607877 68607940 -90991843 + G-rich Low_complexity Low_complexity 5 61 0 1 1108 22 0 0 0 chr3 68608046 68608068 -90991715 + AT_rich Low_complexity Low_complexity 1 22 0 1 1108 737 177 53 60 chr3 68608068 68608218 -90991565 - B1_Mur3 SINE Alu 0 149 1 1 1108 250 253 0 24 chr3 68608579 68608664 -90991119 + CT-rich Low_complexity Low_complexity 1 83 0 1 1108 3458 50 37 5 chr3 68608903 68609340 -90990443 - L1_Mus1 LINE L1 -2 6565 6115 1 1108 2124 62 7 4 chr3 68609341 68609629 -90990154 + L1_Mus1 LINE L1 5590 5901 -396 1 1108 381 223 173 73 chr3 68609669 68609819 -90989964 + RMER10A LTR ERVL 12 176 -266 1 1108 1609 164 62 9 chr3 68609828 68610149 -90989634 + ORR1B1 LTR MaLR 49 386 -8 1 1108 532 261 116 23 chr3 68610161 68610377 -90989406 + RMER10A LTR ERVL 182 417 -25 1 1108 635 207 14 14 chr3 68610391 68610533 -90989250 + B3 SINE B2 69 210 -6 1 1108 227 343 160 18 chr3 68610594 68610932 -90988851 + L2 LINE L2 214 599 -2820 1 1108 419 253 0 0 chr3 68611560 68611639 -90988144 - B3 SINE B2 -136 80 2 1 1108 298 361 75 75 chr3 68612228 68612536 -90987247 + LTR81C LTR ERV1? 613 920 -233 1 1108 787 344 82 26 chr3 68612569 68613035 -90986748 + MER74A LTR ERVL 13 504 -54 1 1108 634 256 119 30 chr3 68613117 68613318 -90986465 - ID_B1 SINE B4 -3 221 3 1 1108 1631 189 82 15 chr3 68613355 68613438 -90986345 - RLTR20B3 LTR ERVK 0 577 473 1 1108 351 0 0 0 chr3 68613438 68613477 -90986306 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 1108 1631 189 82 15 chr3 68613477 68613785 -90985998 - RLTR20B3 LTR ERVK -105 472 161 1 1108 2350 190 63 26 chr3 68613786 68614326 -90985457 - RLTR20B2 LTR ERVK 0 560 1 1 1108 285 254 28 0 chr3 68614670 68614741 -90985042 + MIR SINE MIR 79 151 -111 1 1108 960 217 88 0 chr3 68614791 68615008 -90984775 + B4A SINE B4 2 237 -55 1 1108 2276 249 159 9 chr3 68615379 68616064 -90983719 + Lx8 LINE L1 6684 7471 -2 1 1108 436 316 54 35 chr3 68617147 68617350 -90982433 + B4A SINE B4 63 269 -23 1 1108 432 0 0 0 chr3 68617350 68617398 -90982385 + (CA)n Simple_repeat Simple_repeat 2 49 0 1 1108 629 224 35 7 chr3 68617587 68617731 -90982052 + B1F2 SINE Alu 2 149 0 1 1108 437 322 0 40 chr3 68618090 68618216 -90981567 + RSINE1 SINE B4 32 152 -13 1 1108 642 259 7 0 chr3 68618769 68618912 -90980871 + ID_B1 SINE B4 80 223 -1 1 1108 1172 49 7 0 chr3 68619257 68619401 -90980382 - B1_Mus1 SINE Alu -2 146 2 1 1108 282 330 49 64 chr3 68619527 68619731 -90980052 + MER63B DNA AcHobo 125 325 -111 1 1108 232 254 0 0 chr3 68619743 68619798 -90979985 - ID2 SINE ID -20 63 9 1 1108 286 327 40 0 chr3 68619801 68619902 -90979881 + MER63B DNA AcHobo 332 436 0 1 1108 856 240 50 10 chr3 68620192 68620394 -90979389 + B3 SINE B2 1 210 -6 1 1108 269 329 47 0 chr3 68620434 68620519 -90979264 - MER45R DNA Tip100 -1492 89 1 1 1108 521 222 6 0 chr3 68620623 68620799 -90978984 + (CA)n Simple_repeat Simple_repeat 2 178 0 1 1108 542 243 4 0 chr3 68620816 68621077 -90978706 + (CA)n Simple_repeat Simple_repeat 1 261 0 1 1108 354 80 0 0 chr3 68621079 68621129 -90978654 + (TC)n Simple_repeat Simple_repeat 2 51 0 1 1108 402 21 0 0 chr3 68621131 68621178 -90978605 + (CA)n Simple_repeat Simple_repeat 1 47 0 1 1108 187 116 22 44 chr3 68621963 68622008 -90977775 + (TATAA)n Simple_repeat Simple_repeat 3 46 0 1 1108 21 0 0 0 chr3 68622009 68622030 -90977753 + AT_rich Low_complexity Low_complexity 1 21 0 1 1108 1509 142 4 0 chr3 68622039 68622264 -90977519 + URR1A DNA MER1_type 1 226 0 1 1108 638 290 82 49 chr3 68622480 68622846 -90976937 + LTR55 LTR ERV 49 426 -122 1 1108 583 297 93 10 chr3 68622954 68623267 -90976516 - L1MC4 LINE L1 -632 7410 7072 1 1108 778 307 15 0 chr3 68623288 68623493 -90976290 + MER58A DNA MER1_type 1 208 -16 1 1108 664 295 22 9 chr3 68623520 68623746 -90976037 - L1MC4 LINE L1 -1009 7033 6805 1 1108 733 138 61 8 chr3 68624720 68624851 -90974932 - B1_Mur1 SINE Alu 0 149 12 1 1108 772 245 262 16 chr3 68625192 68625504 -90974279 - MTD LTR MaLR 0 419 35 1 1108 299 304 0 0 chr3 68625652 68625731 -90974052 - L1MB2 LINE L1 -62 6109 6031 2 1108 390 247 193 6 chr3 68625958 68626129 -90973654 - L1MC4 LINE L1 -1055 6987 6785 2 1108 287 329 0 0 chr3 68626677 68626747 -90973036 - B4A SINE B4 -138 154 85 2 1108 360 0 0 0 chr3 68626882 68626922 -90972861 + (TTTA)n Simple_repeat Simple_repeat 3 42 0 2 1108 875 238 83 11 chr3 68626987 68627251 -90972532 - B4A SINE B4 0 292 10 2 1108 471 262 20 7 chr3 68630230 68630376 -90969407 + B1F SINE Alu 1 148 -1 2 1108 290 132 0 19 chr3 68630378 68630432 -90969351 + GA-rich Low_complexity Low_complexity 1 53 0 2 1108 279 240 0 16 chr3 68630763 68630863 -90968920 + B1_Mus2 SINE Alu 19 141 -6 2 1108 21 0 0 0 chr3 68631824 68631845 -90967938 + AT_rich Low_complexity Low_complexity 1 21 0 2 1108 3667 50 32 4 chr3 68633298 68633761 -90966022 - L1Md_F2 LINE L1 -1 6581 6106 2 1108 474 18 0 0 chr3 68634221 68634276 -90965507 + (CTG)n Simple_repeat Simple_repeat 1 55 0 2 1108 333 0 0 0 chr3 68634276 68634313 -90965470 + (ATG)n Simple_repeat Simple_repeat 3 39 0 2 1108 603 152 0 0 chr3 68634937 68635036 -90964747 + B1_Mus2 SINE Alu 12 110 -37 2 1108 943 9 0 0 chr3 68635786 68635899 -90963884 + B2_Mm2 SINE B2 50 162 -33 2 1108 180 0 0 0 chr3 68635899 68635919 -90963864 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 2 1108 1203 196 92 25 chr3 68635955 68636269 -90963514 - MTC LTR MaLR -36 385 51 2 1108 3674 8 0 0 chr3 68636269 68636665 -90963118 + MTA_Mm LTR MaLR 1 396 0 2 1108 9218 37 5 1 chr3 68636665 68637759 -90962024 + MTA_Mm-int LTR MaLR 1 1098 0 2 1108 3385 21 23 0 chr3 68637759 68638146 -90961637 + MTA_Mm LTR MaLR 1 396 0 2 1108 994 301 44 9 chr3 68638170 68638509 -90961274 - Lx7 LINE L1 -396 7300 6950 2 1108 587 144 35 43 chr3 68638548 68638664 -90961119 + B1_Mur4 SINE Alu 6 120 -30 2 1108 247 266 36 48 chr3 68638928 68639011 -90960772 + RSINE1 SINE B4 84 165 0 2 1108 333 0 0 0 chr3 68639016 68639053 -90960730 + (TAAA)n Simple_repeat Simple_repeat 3 39 0 2 1108 314 207 126 0 chr3 68639396 68639483 -90960300 + MER3 DNA MER1_type 102 199 -10 2 1108 226 348 121 14 chr3 68639652 68639792 -90959991 + MLT1G LTR MaLR 217 371 -220 2 1108 490 126 9 43 chr3 68640193 68640309 -90959474 + CT-rich Low_complexity Low_complexity 2 113 0 2 1108 259 102 0 0 chr3 68640316 68640365 -90959418 - B3 SINE B2 -1 215 167 2 1108 461 206 59 144 chr3 68640380 68640533 -90959250 + B3A SINE B2 54 193 -5 2 1108 189 107 0 0 chr3 68640680 68640708 -90959075 + (TGAA)n Simple_repeat Simple_repeat 2 29 0 2 1108 553 304 7 0 chr3 68642284 68642432 -90957351 + RSINE1 SINE B4 1 149 -16 2 1108 190 324 0 14 chr3 68644122 68644191 -90955592 + MIR SINE MIR 60 127 -81 2 1108 180 283 85 21 chr3 68644856 68644950 -90954833 - MER5B DNA MER1_type -67 111 12 2 1108 1098 0 0 0 chr3 68646923 68647045 -90952738 + (TTCCC)n Simple_repeat Simple_repeat 1 122 0 2 1108 213 286 24 0 chr3 68647089 68647173 -90952610 + CT-rich Low_complexity Low_complexity 2 87 0 2 1108 217 132 0 0 chr3 68647106 68647144 -90952639 + (TCTG)n Simple_repeat Simple_repeat 2 39 0 2 1108 343 241 64 163 chr3 68647181 68647384 -90952399 + RMER10A LTR ERVL 244 426 -16 2 1108 578 248 24 54 chr3 68647688 68647854 -90951929 - RSINE1 SINE B4 0 165 5 2 1108 734 232 62 119 chr3 68648184 68648394 -90951389 + B3A SINE B2 1 198 0 2 1108 384 22 0 0 chr3 68648460 68648505 -90951278 + (T)n Simple_repeat Simple_repeat 1 45 0 2 1108 260 250 112 0 chr3 68648530 68648610 -90951173 - PB1 SINE Alu -2 125 37 2 1108 2371 146 138 84 chr3 68648666 68649310 -90950473 + RMER6C LTR ERVK 1 679 -11 2 1108 835 240 40 10 chr3 68649426 68649628 -90950155 - B3 SINE B2 0 216 9 2 1108 1555 68 0 0 chr3 68650735 68650927 -90948856 - B2_Mm1a SINE B2 0 193 2 2 1108 28 0 0 0 chr3 68651440 68651468 -90948315 + AT_rich Low_complexity Low_complexity 1 28 0 2 1108 639 0 0 0 chr3 68651817 68651888 -90947895 + (GAAA)n Simple_repeat Simple_repeat 4 74 0 2 1108 635 189 8 8 chr3 68652822 68652945 -90946838 + RSINE1 SINE B4 6 128 -37 2 1108 237 180 0 0 chr3 68652991 68653041 -90946742 + (CAGA)n Simple_repeat Simple_repeat 3 52 0 2 1108 1013 238 24 0 chr3 68653343 68653553 -90946230 - B3 SINE B2 0 216 2 2 1108 964 322 58 32 chr3 68653958 68654368 -90945415 + MT2A LTR ERVL 2 422 -111 2 1108 4413 142 26 33 chr3 68654369 68654857 -90944926 + RLTR13C2 LTR ERVK 1 496 -397 2 1108 3276 56 2 2 chr3 68654857 68655253 -90944530 - MTA_Mm LTR MaLR 0 396 1 2 1108 4413 63 9 21 chr3 68655253 68655643 -90944140 + RLTR13C2 LTR ERVK 408 879 -14 2 1108 375 247 570 16 chr3 68656067 68656309 -90943474 + MTE2b LTR MaLR 3 379 0 2 1108 180 0 0 0 chr3 68656583 68656603 -90943180 + (CAAGG)n Simple_repeat Simple_repeat 1 20 0 2 1108 2179 146 58 15 chr3 68656798 68657194 -90942589 - MTC LTR MaLR -8 413 1 2 1108 537 309 85 6 chr3 68657194 68657370 -90942413 - ID_B1 SINE B4 -34 190 1 2 1108 250 326 20 10 chr3 68657426 68657525 -90942258 + MLT1J1 LTR MaLR 3 102 -342 2 1108 326 298 0 12 chr3 68659020 68659105 -90940678 + GA-rich Low_complexity Low_complexity 4 87 0 2 1108 245 268 41 27 chr3 68659105 68659178 -90940605 - MLT1F1 LTR MaLR -371 198 125 2 1108 318 67 0 0 chr3 68659186 68659231 -90940552 + (TTTTG)n Simple_repeat Simple_repeat 4 48 0 2 1108 281 309 31 0 chr3 68659298 68659395 -90940388 + ID_B1 SINE B4 77 176 -48 2 1108 487 196 19 19 chr3 68659313 68659417 -90940366 + PB1D10 SINE Alu 12 115 -2 2 1108 423 267 20 46 chr3 68659609 68659762 -90940021 - B1F SINE Alu 0 149 1 2 1108 500 296 122 16 chr3 68660703 68660892 -90938891 - MIRb SINE MIR -15 253 45 2 1108 4118 47 0 0 chr3 68661424 68661911 -90937872 - L1_Mus1 LINE L1 0 6567 6081 2 1108 612 309 58 29 chr3 68661975 68662318 -90937465 - ORR1E LTR MaLR -6 353 1 2 1108 1144 81 0 0 chr3 68662625 68662773 -90937010 + B1_Mus1 SINE Alu 1 148 0 2 1108 308 374 56 0 chr3 68663105 68663212 -90936571 + ID_B1 SINE B4 5 117 -107 2 1108 589 248 0 84 chr3 68663340 68663475 -90936308 + ID_B1 SINE B4 84 210 -14 2 1108 243 0 0 0 chr3 68663475 68663502 -90936281 + (CAAT)n Simple_repeat Simple_repeat 4 30 0 2 1108 589 248 0 84 chr3 68663502 68663520 -90936263 + ID_B1 SINE B4 211 224 0 2 1108 251 349 79 0 chr3 68664032 68664184 -90935599 - MIR SINE MIR -24 238 75 2 1108 1545 224 74 6 chr3 68664349 68664700 -90935083 + MTE2b LTR MaLR 1 375 -4 2 1108 745 234 99 139 chr3 68665576 68666008 -90933775 - RLTR23 LTR ERV1 -8 422 8 2 1108 2513 62 6 58 chr3 68666066 68666411 -90933372 - ORR1A2 LTR MaLR 0 327 1 2 1108 323 331 16 24 chr3 68666914 68667038 -90932745 + ORR1E LTR MaLR 4 126 -233 2 1108 753 249 20 40 chr3 68667769 68667955 -90931828 + B3A SINE B2 2 186 -12 2 1108 360 0 0 0 chr3 68667955 68667995 -90931788 + (CA)n Simple_repeat Simple_repeat 1 40 0 2 1108 753 249 20 40 chr3 68667995 68668009 -90931774 + B3A SINE B2 187 198 0 2 1108 321 247 39 0 chr3 68668028 68668105 -90931678 + ID4_ SINE ID 2 81 -2 2 1108 252 0 0 0 chr3 68668363 68668391 -90931392 + (CAGA)n Simple_repeat Simple_repeat 3 30 0 2 1108 761 169 331 0 chr3 68668407 68668567 -90931216 + B3 SINE B2 2 214 -2 2 1108 438 154 0 0 chr3 68668644 68668722 -90931061 + T-rich Low_complexity Low_complexity 1 78 0 2 1108 761 156 57 0 chr3 68668722 68668863 -90930920 - B1_Mur3 SINE Alu 0 149 1 2 1108 462 176 0 0 chr3 68669077 68669151 -90930632 - ID4_ SINE ID -8 75 2 2 1108 215 154 0 25 chr3 68669283 68669323 -90930460 + PB1D7 SINE Alu 65 103 -17 2 1108 399 89 0 0 chr3 68670569 68670625 -90929158 + (TG)n Simple_repeat Simple_repeat 2 57 0 2 1108 339 314 84 8 chr3 68670625 68670810 -90928973 - B4A SINE B4 -23 269 50 2 1108 22 35 0 0 chr3 68673525 68673554 -90926229 + GC_rich Low_complexity Low_complexity 1 29 0 2 1108 189 107 0 0 chr3 68673682 68673710 -90926073 + (CTG)n Simple_repeat Simple_repeat 1 28 0 2 1108 584 191 52 78 chr3 68676098 68676251 -90923532 - B1F SINE Alu 0 149 1 2 1108 415 77 15 0 chr3 68677673 68677738 -90922045 - B1_Mus2 SINE Alu 0 147 82 2 1108 345 100 0 0 chr3 68677759 68677809 -90921974 + (TCTCCC)n Simple_repeat Simple_repeat 6 55 0 2 1108 3027 133 7 9 chr3 68678164 68678625 -90921158 + Lx4A LINE L1 6359 6818 -240 2 1108 1686 196 66 16 chr3 68679025 68679411 -90920372 - MTD LTR MaLR -13 406 13 2 1108 1129 77 0 0 chr3 68680090 68680227 -90919556 + B1_Mm SINE Alu 2 138 -9 2 1108 246 32 0 0 chr3 68680227 68680258 -90919525 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 2 1108 281 93 23 0 chr3 68680408 68680451 -90919332 + ORR1B2 LTR MaLR 1 44 -323 2 1108 326 270 25 34 chr3 68681184 68681303 -90918480 + RMER15 LTR ERVL 6 123 -452 2 1108 501 238 265 0 chr3 68681464 68681633 -90918150 + RMER15 LTR ERVL 275 491 -84 2 138 1996 153 56 13 chr3 68681633 68681970 -90917813 + ORR1B1 LTR MaLR 1 352 -42 2 1109 674 188 231 17 chr3 68681970 68682143 -90917640 + B3 SINE B2 1 210 -6 2 1109 1996 153 56 13 chr3 68682143 68682183 -90917600 + ORR1B1 LTR MaLR 353 393 -1 2 1109 4092 246 53 66 chr3 68682183 68682851 -90916932 + ORR1B1-int LTR MaLR 1 651 -719 2 1109 5609 50 39 0 chr3 68682851 68683549 -90916234 - L1_Mus2 LINE L1 -2 6564 5840 2 1109 4092 246 53 66 chr3 68683549 68684267 -90915516 + ORR1B1-int LTR MaLR 652 1369 -1 2 1109 2067 157 103 6 chr3 68684267 68684626 -90915157 + ORR1B1 LTR MaLR 1 394 0 2 1109 233 286 65 0 chr3 68684633 68684710 -90915073 + RMER15 LTR ERVL 492 573 -2 2 1109 494 285 8 24 chr3 68684792 68684918 -90914865 - ID_B1 SINE B4 -8 216 93 2 1109 239 204 211 22 chr3 68685438 68685528 -90914255 + MT2B LTR ERVL 151 257 -344 2 1109 651 89 102 0 chr3 68685452 68685573 -90914210 + B1_Mur4 SINE Alu 5 150 0 2 1109 192 217 274 12 chr3 68686005 68686089 -90913694 + MIRb SINE MIR 119 224 -44 3 1109 353 181 40 38 chr3 68686138 68686239 -90913544 + B4A SINE B4 1 97 -68 3 1109 2343 132 79 31 chr3 68689217 68689662 -90910121 + RMER4A LTR ERVK 1 466 0 3 1109 910 264 21 35 chr3 68689691 68689978 -90909805 + B4A SINE B4 2 284 -8 3 1109 200 264 42 0 chr3 68689982 68690054 -90909729 + (CATA)n Simple_repeat Simple_repeat 3 77 0 3 1109 491 277 21 42 chr3 68690309 68690452 -90909331 - B1F SINE Alu -8 141 2 3 1109 329 236 9 0 chr3 68690452 68690558 -90909225 + (TA)n Simple_repeat Simple_repeat 1 107 0 3 1109 277 317 64 35 chr3 68690713 68690886 -90908897 + MER21B LTR ERV1 141 318 -545 3 1109 2466 140 45 30 chr3 68691431 68691522 -90908261 - RLTR16 LTR ERVK 0 505 402 3 1109 333 0 0 0 chr3 68691522 68691559 -90908224 + (CA)n Simple_repeat Simple_repeat 2 38 0 3 1109 216 0 0 0 chr3 68691559 68691582 -90908201 + (GA)n Simple_repeat Simple_repeat 2 25 0 3 1109 2466 140 45 30 chr3 68691582 68691982 -90907801 - RLTR16 LTR ERVK -104 401 7 3 1109 477 319 303 55 chr3 68692296 68692663 -90907120 + MER4B-int LTR ERV1 3142 3599 -3159 3 1109 438 351 79 31 chr3 68692872 68693163 -90906620 + MER21-int LTR ERV1 674 978 -3213 3 1109 667 271 144 67 chr3 68693836 68694212 -90905571 + MTD LTR MaLR 1 405 -14 3 1109 381 296 72 0 chr3 68694224 68694349 -90905434 + MER21-int LTR ERV1 3492 3625 -566 3 1109 497 244 69 0 chr3 68694558 68694696 -90905087 - MLT1A1 LTR MaLR -215 150 1 3 1109 415 194 153 0 chr3 68694767 68694865 -90904918 + MER21-int LTR ERV1 3720 3832 -359 3 1109 490 262 54 0 chr3 68694877 68695026 -90904757 + MER21-int LTR ERV1 3859 4015 -176 3 1109 287 192 75 25 chr3 68695491 68695571 -90904212 + MTC LTR MaLR 5 88 -331 3 1109 676 204 13 32 chr3 68695649 68695806 -90903977 + MTC LTR MaLR 268 421 0 3 1109 617 110 10 0 chr3 68695817 68695917 -90903866 + (TA)n Simple_repeat Simple_repeat 2 102 0 3 1109 474 305 95 62 chr3 68696064 68696389 -90903394 + MER21B LTR ERV1 383 718 -145 3 1109 375 309 90 26 chr3 68696988 68697429 -90902354 - L1MB3 LINE L1 0 6180 5713 3 1109 201 132 53 0 chr3 68697610 68697648 -90902135 + (CAAA)n Simple_repeat Simple_repeat 2 41 0 3 1109 285 190 69 0 chr3 68697828 68697886 -90901897 - ID4 SINE ID 0 83 22 3 1109 237 240 105 13 chr3 68700252 68700328 -90899455 - ID SINE ID -140 84 2 3 1109 227 227 14 96 chr3 68701153 68701189 -90898594 - RMER21A LTR ERV1 -630 317 288 3 1109 429 290 48 0 chr3 68701189 68701334 -90898449 + B3A SINE B2 3 154 -44 3 1109 23 33 0 0 chr3 68701639 68701669 -90898114 + AT_rich Low_complexity Low_complexity 1 30 0 3 1109 273 75 0 0 chr3 68701748 68701788 -90897995 + (CAAAA)n Simple_repeat Simple_repeat 1 40 0 3 1109 279 276 90 20 chr3 68702029 68702129 -90897654 + B3A SINE B2 9 115 -83 3 1109 519 310 31 8 chr3 68703005 68703135 -90896648 + RSINE1 SINE B4 4 136 -29 3 1109 207 100 0 0 chr3 68703144 68703174 -90896609 + (CAAT)n Simple_repeat Simple_repeat 2 31 0 3 1109 727 11 22 0 chr3 68703284 68703376 -90896407 + (GGAA)n Simple_repeat Simple_repeat 3 96 0 3 1109 435 40 0 0 chr3 68704040 68704090 -90895693 - MERVL-int LTR ERVL -4450 1035 986 3 1109 2852 10 56 0 chr3 68704376 68704970 -90894813 + MERVL-int LTR ERVL 406 1032 -4453 3 1109 482 17 0 0 chr3 68704970 68705029 -90894754 + ORR1C1 LTR MaLR 288 346 0 3 1109 2425 46 0 0 chr3 68705029 68705358 -90894425 + ORR1C1-int LTR MaLR 1 329 -1463 3 1109 3091 5 0 0 chr3 68705360 68705732 -90894051 - MT2_Mm LTR ERVL -121 372 1 3 1109 710 32 21 0 chr3 68706067 68706160 -90893623 + MT2_Mm LTR ERVL 390 484 -9 3 1109 7504 13 39 0 chr3 68706831 68707676 -90892107 + MERVL-int LTR ERVL 187 1064 -4421 3 1109 402 67 0 0 chr3 68707676 68707736 -90892047 - B1_Mur4 SINE Alu -1 149 90 3 1109 2834 28 0 0 chr3 68708079 68708398 -90891385 - MERVL-int LTR ERVL -438 5047 4729 3 1109 2826 8 83 0 chr3 68708399 68708797 -90890986 - MERVL-int LTR ERVL -4429 1056 626 3 1109 1828 146 17 54 chr3 68708901 68709255 -90890528 + ORR1C1 LTR MaLR 3 343 -35 3 1109 473 293 204 32 chr3 68710389 68710918 -90888865 + L1MC5 LINE L1 7184 7803 -158 3 1109 205 171 0 0 chr3 68711115 68711150 -90888633 + (TG)n Simple_repeat Simple_repeat 2 36 0 3 1109 22 0 0 0 chr3 68711212 68711234 -90888549 + AT_rich Low_complexity Low_complexity 1 22 0 3 1109 882 280 69 0 chr3 68711426 68711715 -90888068 - Lx8 LINE L1 -244 7229 6921 3 1109 899 282 22 9 chr3 68711720 68711949 -90887834 - B4A SINE B4 -59 233 2 3 1109 769 266 72 98 chr3 68712510 68712906 -90886877 + MTE2a LTR MaLR 1 400 -19 3 1109 262 218 25 13 chr3 68713026 68713105 -90886678 + (TA)n Simple_repeat Simple_repeat 1 80 0 3 1109 7932 35 0 2 chr3 68713144 68714097 -90885686 + L1_Mus1 LINE L1 5646 6567 0 3 1109 207 352 80 6 chr3 68714208 68714371 -90885412 - MIR SINE MIR -2 260 86 3 1109 329 242 0 0 chr3 68716245 68716311 -90883472 + B1F SINE Alu 33 98 -51 3 1109 3435 175 61 30 chr3 68716747 68717195 -90882588 + Lx6 LINE L1 6540 6978 -482 3 1109 185 0 40 0 chr3 68717195 68717220 -90882563 + (TGGGGG)n Simple_repeat Simple_repeat 4 29 0 3 1109 3435 175 61 30 chr3 68717220 68717443 -90882340 + Lx6 LINE L1 6979 7231 -229 3 1109 292 274 0 46 chr3 68717471 68717568 -90882215 + A-rich Low_complexity Low_complexity 5 96 0 3 1109 1256 41 0 0 chr3 68717568 68717715 -90882068 + B1_Mus1 SINE Alu 2 148 0 3 1109 292 274 0 46 chr3 68717715 68717770 -90882013 + A-rich Low_complexity Low_complexity 97 149 0 3 1109 679 211 53 0 chr3 68717777 68717929 -90881854 + Lx6 LINE L1 7299 7458 -2 3 1109 291 28 0 0 chr3 68718233 68718269 -90881514 + (ACTG)n Simple_repeat Simple_repeat 4 39 0 3 1109 351 113 0 0 chr3 68718980 68719033 -90880750 + URR1A DNA MER1_type 58 110 -116 3 1109 661 226 20 14 chr3 68719152 68719300 -90880483 + B1_Mur1 SINE Alu 1 149 0 3 1109 335 268 36 0 chr3 68720968 68721068 -90878715 - B1_Mur3 SINE Alu -34 113 1 3 1109 212 120 20 0 chr3 68721248 68721298 -90878485 + (TTTG)n Simple_repeat Simple_repeat 2 52 0 3 1109 1323 102 38 0 chr3 68721353 68721539 -90878244 - B2_Mm2 SINE B2 -2 193 1 3 1109 394 277 10 0 chr3 68722648 68722749 -90877034 + PB1D10 SINE Alu 1 102 -15 3 1109 27188 73 4 1 chr3 68723276 68727489 -90872294 + L1Md_F LINE L1 556 4781 -1102 3 1109 3911 34 2 2 chr3 68727493 68727933 -90871850 + L1Md_F2 LINE L1 6141 6580 -2 3 1109 2519 74 3 69 chr3 68728340 68728690 -90871093 + ORR1A2 LTR MaLR 1 327 0 3 1109 703 287 50 21 chr3 68728907 68729167 -90870616 + B4A SINE B4 2 268 -24 3 1109 216 0 0 0 chr3 68729167 68729191 -90870592 + (TG)n Simple_repeat Simple_repeat 1 24 0 3 1109 703 287 50 21 chr3 68729191 68729211 -90870572 + B4A SINE B4 269 289 -3 3 1109 443 212 71 0 chr3 68729535 68729620 -90870163 + ID_B1 SINE B4 87 177 -47 3 1109 351 336 16 16 chr3 68729773 68729897 -90869886 - B1F1 SINE Alu 0 149 26 3 1109 257 305 49 0 chr3 68730402 68730484 -90869299 - PB1D10 SINE Alu -31 86 1 3 1109 22 0 0 0 chr3 68730790 68730812 -90868971 + AT_rich Low_complexity Low_complexity 1 22 0 3 1109 1194 88 0 0 chr3 68731199 68731346 -90868437 - B1_Mus2 SINE Alu 0 147 1 3 1109 21 0 0 0 chr3 68731535 68731556 -90868227 + AT_rich Low_complexity Low_complexity 1 21 0 3 1109 284 281 43 97 chr3 68732661 68732846 -90866937 + MTEa LTR MaLR 171 345 -34 3 1109 377 303 71 95 chr3 68733142 68733437 -90866346 + L1M2 LINE L1 5448 5735 -556 3 1109 230 178 0 22 chr3 68733503 68733549 -90866234 + GA-rich Low_complexity Low_complexity 5 49 0 3 1109 551 268 186 12 chr3 68733638 68733891 -90865892 + L1MB1 LINE L1 5855 6151 -38 3 1109 23 0 0 0 chr3 68734910 68734933 -90864850 + AT_rich Low_complexity Low_complexity 1 23 0 3 1109 1624 62 5 0 chr3 68735212 68735404 -90864379 + B2_Mm1t SINE B2 1 193 0 3 1109 198 103 0 0 chr3 68735404 68735433 -90864350 + (A)n Simple_repeat Simple_repeat 1 29 0 3 1109 395 308 72 115 chr3 68736185 68736394 -90863389 - B4A SINE B4 -92 200 1 3 1109 629 196 35 76 chr3 68736470 68736614 -90863169 - B1_Mur2 SINE Alu -11 138 1 3 1109 608 190 207 0 chr3 68736923 68737044 -90862739 + B1_Mus1 SINE Alu 2 147 -1 3 1109 250 258 124 0 chr3 68737100 68737197 -90862586 + L1M2 LINE L1 4959 5067 -1073 3 1109 865 211 113 0 chr3 68737227 68737421 -90862362 + B4A SINE B4 2 217 -75 3 1109 1387 145 201 7 chr3 68737430 68737728 -90862055 + Lx9 LINE L1 7286 7641 -3 3 1109 237 321 12 0 chr3 68737785 68737866 -90861917 + (CA)n Simple_repeat Simple_repeat 1 82 0 3 1109 281 276 0 0 chr3 68737869 68737927 -90861856 + B4A SINE B4 230 287 -5 3 1109 25 0 0 0 chr3 68738156 68738181 -90861602 + AT_rich Low_complexity Low_complexity 1 25 0 3 1109 279 203 0 0 chr3 68739295 68739354 -90860429 + (TATG)n Simple_repeat Simple_repeat 2 60 0 3 1109 791 186 69 25 chr3 68739516 68739676 -90860107 - B3 SINE B2 0 216 50 3 1109 240 348 33 0 chr3 68740067 68740159 -90859624 + MIRc SINE MIR 24 118 -150 3 1109 536 182 26 52 chr3 68740353 68740469 -90859314 + PB1D9 SINE Alu 7 119 -1 3 1109 484 279 64 0 chr3 68740674 68740814 -90858969 + B1F SINE Alu 1 149 0 3 1109 499 277 0 56 chr3 68740943 68741069 -90858714 - ID_B1 SINE B4 -13 211 93 3 1109 913 258 52 18 chr3 68741081 68741367 -90858416 - B4A SINE B4 0 292 1 3 1109 460 179 13 0 chr3 68741695 68741773 -90858010 + ID4_ SINE ID 2 80 -3 3 1109 36 53 0 0 chr3 68741950 68742007 -90857776 + AT_rich Low_complexity Low_complexity 1 57 0 3 1109 238 214 12 136 chr3 68742065 68742146 -90857637 + MIR SINE MIR 86 156 -106 3 1109 559 333 118 12 chr3 68743164 68743504 -90856279 + MER63B DNA AcHobo 58 433 -3 3 1109 809 158 15 0 chr3 68744693 68744826 -90854957 + B1_Mus2 SINE Alu 1 135 -12 3 1109 411 205 12 0 chr3 68745237 68745320 -90854463 - L1_Rod LINE L1 -46 5801 5718 3 1109 431 331 45 7 chr3 68745724 68745879 -90853904 + MLT1A0 LTR MaLR 156 316 -49 3 1109 331 395 40 6 chr3 68745932 68746105 -90853678 + L1MC5 LINE L1 5578 5756 -2126 3 1109 1932 196 124 74 chr3 68746203 68746501 -90853282 + RLTR31A_Mm LTR ERVK 1 322 -262 3 1109 1255 56 0 0 chr3 68746501 68746645 -90853138 + B1_Mus2 SINE Alu 2 145 -2 4 1109 1932 196 124 74 chr3 68746645 68746902 -90852881 + RLTR31A_Mm LTR ERVK 323 584 0 3 1109 1460 85 21 0 chr3 68747060 68747248 -90852535 + B2_Mm2 SINE B2 2 193 -2 4 1109 586 229 111 32 chr3 68747606 68747795 -90851988 + B3 SINE B2 1 204 -12 4 1109 391 298 139 11 chr3 68747922 68748102 -90851681 + L1MC5 LINE L1 7026 7228 -733 3 1109 359 276 66 9 chr3 68748292 68748398 -90851385 - ID_B1 SINE B4 -9 215 104 4 1109 283 291 109 17 chr3 68748398 68748411 -90851372 - B1F SINE Alu -9 140 11 4 1109 697 164 33 33 chr3 68748813 68748933 -90850850 - B3 SINE B2 -86 130 11 4 1109 714 164 86 0 chr3 68749292 68749420 -90850363 + B1_Mur2 SINE Alu 1 139 -10 4 1109 207 0 0 0 chr3 68749420 68749443 -90850340 + (CAA)n Simple_repeat Simple_repeat 2 24 0 4 1109 1100 237 92 19 chr3 68750269 68750540 -90849243 - MTE2b LTR MaLR -22 357 67 4 1109 410 260 24 24 chr3 68750747 68750873 -90848910 - B3 SINE B2 -3 213 88 4 1109 270 224 26 0 chr3 68750885 68750961 -90848822 + MTEa LTR MaLR 202 279 -100 4 1109 244 91 35 35 chr3 68750969 68751026 -90848757 + (TCTCTG)n Simple_repeat Simple_repeat 2 58 0 4 1109 556 344 107 20 chr3 68751149 68751449 -90848334 + MLT1K LTR MaLR 224 549 -46 4 1109 242 430 16 8 chr3 68751479 68751601 -90848182 + L2b LINE L2 3251 3373 -2 4 1109 21 0 0 0 chr3 68752011 68752032 -90847751 + AT_rich Low_complexity Low_complexity 1 21 0 4 1109 234 283 17 94 chr3 68752054 68752171 -90847612 + MamGypLTR2c LTR Gypsy 311 418 -650 4 1109 266 262 35 12 chr3 68752103 68752188 -90847595 + BC1_Mm scRNA scRNA 8 94 -58 4 1109 269 70 0 44 chr3 68752288 68752314 -90847469 + (GAAA)n Simple_repeat Simple_repeat 2 27 0 4 1109 501 17 0 0 chr3 68752314 68752372 -90847411 + (GGGGA)n Simple_repeat Simple_repeat 5 62 0 4 1109 269 70 0 44 chr3 68752372 68752390 -90847393 + (GAAA)n Simple_repeat Simple_repeat 4 20 0 4 1109 25 0 0 0 chr3 68752770 68752795 -90846988 + AT_rich Low_complexity Low_complexity 1 25 0 4 1109 1453 57 0 0 chr3 68753717 68753893 -90845890 - L1Md_T LINE L1 0 6582 6407 4 1109 1485 149 0 39 chr3 68754698 68754929 -90844854 + URR1A DNA MER1_type 5 226 0 4 1109 277 231 0 15 chr3 68755337 68755403 -90844380 + PB1D10 SINE Alu 50 114 -3 4 1109 524 222 104 137 chr3 68755586 68755769 -90844014 - B3 SINE B2 -15 201 19 4 1109 953 40 0 53 chr3 68755831 68755866 -90843917 - B1_Mus1 SINE Alu 0 148 53 4 1109 371 174 34 162 chr3 68755866 68755933 -90843850 - MT2B LTR ERVL -337 264 209 4 1109 3292 76 13 132 chr3 68755933 68756480 -90843303 + RLTR45 LTR ERVK 1 482 0 4 1109 953 40 0 53 chr3 68756480 68756509 -90843274 - B1_Mus1 SINE Alu -96 52 24 4 1109 371 174 34 162 chr3 68756509 68756529 -90843254 - MT2B LTR ERVL -393 208 163 4 1109 1512 65 21 0 chr3 68756949 68757135 -90842648 - B2_Mm2 SINE B2 -3 192 3 4 1109 1038 237 5 0 chr3 68757885 68758096 -90841687 + B3 SINE B2 1 212 -4 4 1109 257 103 14 42 chr3 68758787 68758858 -90840925 + A-rich Low_complexity Low_complexity 2 70 0 4 1109 420 265 61 38 chr3 68759053 68759189 -90840594 + B3A SINE B2 77 215 -1 4 1109 475 246 70 0 chr3 68759235 68759349 -90840434 - RSINE1 SINE B4 -13 152 31 4 1109 343 228 8 144 chr3 68759619 68759737 -90840046 + PB1D9 SINE Alu 11 112 -8 4 1109 430 284 86 85 chr3 68759784 68760142 -90839641 - L1MB4 LINE L1 -5309 1298 947 4 1109 312 48 0 0 chr3 68760489 68760531 -90839252 + (CAGG)n Simple_repeat Simple_repeat 2 43 0 4 1109 495 225 30 37 chr3 68760902 68761036 -90838747 + RMER15 LTR ERVL 423 555 -20 4 1109 1487 280 55 28 chr3 68761382 68761926 -90837857 + Lx8 LINE L1 6779 7337 -136 4 1109 583 239 19 118 chr3 68761936 68762136 -90837647 + B3 SINE B2 1 186 -9 4 1109 855 220 0 0 chr3 68762155 68762305 -90837478 + B1_Mur4 SINE Alu 1 150 0 4 1109 33 56 0 0 chr3 68762305 68762359 -90837424 + AT_rich Low_complexity Low_complexity 1 54 0 4 1109 27 29 0 0 chr3 68763835 68763869 -90835914 + AT_rich Low_complexity Low_complexity 1 34 0 4 1109 343 250 74 0 chr3 68764176 68764284 -90835499 + PB1D10 SINE Alu 1 116 -1 4 1109 291 330 75 78 chr3 68764701 68765007 -90834776 + ORR1E LTR MaLR 55 359 0 4 1109 353 58 0 19 chr3 68765178 68765231 -90834552 + (TG)n Simple_repeat Simple_repeat 1 52 0 4 1109 396 294 146 6 chr3 68765340 68765518 -90834265 - B4A SINE B4 -88 204 2 4 1109 629 175 88 0 chr3 68765584 68765698 -90834085 - B1_Mur2 SINE Alu -2 147 24 4 1109 1480 65 43 0 chr3 68766775 68766961 -90832822 + B2_Mm2 SINE B2 1 194 -1 4 1109 887 224 167 56 chr3 68767198 68767539 -90832244 + MTE2a LTR MaLR 1 379 0 4 1109 270 0 0 0 chr3 68767720 68767750 -90832033 + (TTTA)n Simple_repeat Simple_repeat 1 30 0 4 1109 304 243 14 0 chr3 68767757 68767827 -90831956 - PB1 SINE Alu -16 111 41 4 1109 1117 78 39 0 chr3 68768030 68768183 -90831600 + B2_Mm1t SINE B2 2 160 -33 4 1109 186 43 0 0 chr3 68768183 68768206 -90831577 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 4 1109 541 202 9 28 chr3 68768360 68768467 -90831316 + MTC LTR MaLR 3 107 -314 4 1109 29 60 0 0 chr3 68768528 68768578 -90831205 + AT_rich Low_complexity Low_complexity 1 50 0 4 1109 532 280 53 0 chr3 68768738 68768870 -90830913 - B3 SINE B2 -11 205 67 4 1109 1098 209 24 10 chr3 68768960 68769168 -90830615 - B3 SINE B2 -3 213 3 4 1109 216 0 0 0 chr3 68769188 68769212 -90830571 + (TTTTG)n Simple_repeat Simple_repeat 3 26 0 4 1109 1251 54 0 0 chr3 68769213 68769360 -90830423 - B1_Mus1 SINE Alu -1 147 1 4 1109 1822 173 194 4 chr3 68769638 68770196 -90829587 + ORR1D1-int LTR MaLR 707 1370 0 4 1109 1398 166 125 11 chr3 68770196 68770388 -90829395 + ORR1D1 LTR MaLR 15 228 -146 4 1109 261 0 0 0 chr3 68770388 68770417 -90829366 + (CCTG)n Simple_repeat Simple_repeat 1 29 0 4 1109 1398 166 125 11 chr3 68770417 68770495 -90829288 + ORR1D1 LTR MaLR 229 317 -57 4 1109 360 123 0 0 chr3 68770885 68770942 -90828841 + ORR1D1 LTR MaLR 318 374 0 4 1109 855 94 147 8 chr3 68771960 68772089 -90827694 + B1_Mus1 SINE Alu 2 148 0 4 1109 290 294 84 101 chr3 68772105 68772117 -90827666 + MT2B2 LTR ERVL 163 183 -401 4 1109 436 230 23 0 chr3 68772117 68772204 -90827579 + PB1D10 SINE Alu 11 99 -18 4 1109 290 294 84 101 chr3 68772204 68772283 -90827500 + MT2B2 LTR ERVL 184 337 -247 4 1109 295 253 179 0 chr3 68772380 68772475 -90827308 - PB1D10 SINE Alu 0 117 6 4 1109 337 44 0 0 chr3 68772509 68772554 -90827229 - B1_Mm SINE Alu 0 147 103 4 1109 228 35 0 0 chr3 68772570 68772599 -90827184 + (CA)n Simple_repeat Simple_repeat 2 30 0 4 1109 773 111 48 0 chr3 68772607 68772733 -90827050 - B1_Mur3 SINE Alu -17 132 1 4 1109 1003 266 15 27 chr3 68772753 68773012 -90826771 - B4A SINE B4 -36 256 1 4 1109 244 295 184 20 chr3 68773252 68773404 -90826379 + MTEa LTR MaLR 184 360 -19 4 1109 828 218 17 39 chr3 68773530 68773711 -90826072 - B3 SINE B2 0 216 40 4 1109 478 254 9 35 chr3 68773733 68773847 -90825936 - PB1D10 SINE Alu -5 112 2 4 1109 373 331 70 8 chr3 68773937 68773954 -90825829 + ID_B1 SINE B4 76 211 -13 4 1109 391 282 27 72 chr3 68773954 68774065 -90825718 + B1F1 SINE Alu 12 117 -32 4 1109 258 105 0 0 chr3 68774072 68774110 -90825673 + (TAGA)n Simple_repeat Simple_repeat 4 41 0 4 1109 243 321 0 0 chr3 68774111 68774164 -90825619 + B1F SINE Alu 82 134 -15 4 1109 285 29 0 0 chr3 68774164 68774198 -90825585 + (GA)n Simple_repeat Simple_repeat 1 34 0 4 1109 448 292 16 8 chr3 68774457 68774578 -90825205 - RMER10B LTR ERVL 0 398 277 4 1109 294 314 55 43 chr3 68775203 68775229 -90824554 + ID_B1 SINE B4 51 215 -9 4 1109 337 277 73 51 chr3 68775229 68775366 -90824417 + B1F SINE Alu 1 140 -9 4 1109 252 0 0 0 chr3 68775366 68775394 -90824389 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 4 1109 872 323 88 59 chr3 68775572 68775703 -90824080 + Lx8 LINE L1 6841 6968 -505 4 1109 2642 140 24 19 chr3 68775703 68776118 -90823665 + MTC LTR MaLR 5 421 0 4 1109 4805 82 21 11 chr3 68776123 68776754 -90823029 + Lx LINE L1 6018 6654 0 4 1109 872 323 88 59 chr3 68776754 68777093 -90822690 + Lx8 LINE L1 6969 7331 -142 4 1109 371 311 6 56 chr3 68777125 68777150 -90822633 + ID_B1 SINE B4 69 220 -4 4 1109 619 259 30 0 chr3 68777150 68777285 -90822498 + B1_Mur1 SINE Alu 11 149 0 4 1109 29 0 0 0 chr3 68777517 68777546 -90822237 + AT_rich Low_complexity Low_complexity 1 29 0 4 1109 1398 62 0 49 chr3 68777902 68778106 -90821677 + B2_Mm2 SINE B2 1 194 -1 4 1109 343 243 35 43 chr3 68778329 68778445 -90821338 + PB1D10 SINE Alu 1 115 -2 4 1109 1332 138 40 92 chr3 68779262 68779566 -90820217 + Lx4A LINE L1 6771 7058 0 4 1109 614 311 68 38 chr3 68780272 68780666 -90819117 + RLTR4_MM-int LTR ERV1 4017 4422 -3134 4 1109 1184 277 48 31 chr3 68781057 68781538 -90818245 + RLTR4_MM-int LTR ERV1 4799 5287 -2314 4 1109 261 319 6 6 chr3 68781687 68781837 -90817946 + RLTR4_MM-int LTR ERV1 5486 5563 -2038 4 1109 1124 231 97 80 chr3 68782481 68782537 -90817246 + RLTR23 LTR ERV1 1 60 -370 4 1109 4806 58 3 0 chr3 68782537 68783181 -90816602 + L1_Mus2 LINE L1 5956 6566 0 4 1109 1124 231 97 80 chr3 68783181 68783546 -90816237 + RLTR23 LTR ERV1 61 429 -1 4 1109 236 200 14 122 chr3 68783760 68783834 -90815949 + RLTR14 LTR ERV1 317 382 0 4 1109 544 272 6 60 chr3 68783845 68784013 -90815770 - ID_B1 SINE B4 0 224 66 4 1109 353 219 71 30 chr3 68784745 68784844 -90814939 + PB1D9 SINE Alu 17 119 -1 4 1109 284 322 25 8 chr3 68784910 68785029 -90814754 + RSINE1 SINE B4 24 144 -21 4 1109 832 238 119 45 chr3 68785065 68785351 -90814432 - RLTR14 LTR ERV1 -75 307 1 4 1109 265 268 0 0 chr3 68785351 68785401 -90814382 + RSINE1 SINE B4 116 165 0 4 1109 225 0 0 0 chr3 68785425 68785450 -90814333 + (CA)n Simple_repeat Simple_repeat 2 26 0 4 1109 222 37 0 0 chr3 68785455 68785482 -90814301 + (TG)n Simple_repeat Simple_repeat 1 27 0 5 1109 21 57 0 0 chr3 68785937 68785972 -90813811 + AT_rich Low_complexity Low_complexity 1 35 0 5 1109 590 162 20 0 chr3 68786039 68786138 -90813645 - B1_Mus2 SINE Alu -15 132 32 5 1109 1371 56 62 0 chr3 68786164 68786342 -90813441 - B2_Mm2 SINE B2 -6 189 1 5 1109 730 173 128 0 chr3 68786606 68786739 -90813044 + B3A SINE B2 1 150 -48 5 1109 285 241 20 112 chr3 68786775 68786873 -90812910 + BC1_Mm scRNA scRNA 14 102 -50 5 1109 452 246 97 0 chr3 68787529 68787663 -90812120 - B1F SINE Alu -2 147 1 5 1109 543 31 0 0 chr3 68787716 68787781 -90812002 + (TC)n Simple_repeat Simple_repeat 2 66 0 5 1109 381 174 85 18 chr3 68787793 68787957 -90811826 + CT-rich Low_complexity Low_complexity 2 176 0 5 1109 317 273 0 0 chr3 68787967 68788033 -90811750 - ID4_ SINE ID -4 79 14 5 1109 462 300 0 0 chr3 68788033 68788143 -90811640 - PB1D10 SINE Alu -7 110 1 5 1109 518 266 31 24 chr3 68788275 68788402 -90811381 - B1_Mur2 SINE Alu -21 128 1 5 1109 33 25 0 0 chr3 68788402 68788442 -90811341 + AT_rich Low_complexity Low_complexity 1 40 0 5 1109 669 281 7 0 chr3 68788475 68788614 -90811169 + RSINE1 SINE B4 3 142 -23 5 1109 878 222 29 29 chr3 68788679 68788888 -90810895 + B3 SINE B2 2 210 -6 5 1109 838 235 66 0 chr3 68789056 68789252 -90810531 - B3 SINE B2 -6 210 2 5 1109 261 128 0 0 chr3 68789821 68789868 -90809915 + (TTGG)n Simple_repeat Simple_repeat 1 47 0 5 1109 840 179 7 0 chr3 68789868 68790013 -90809770 - B1_Mur2 SINE Alu -2 147 2 5 1109 234 0 0 0 chr3 68790255 68790281 -90809502 + (TAA)n Simple_repeat Simple_repeat 2 27 0 5 1109 1051 286 102 35 chr3 68790328 68790839 -90808944 + MLT1F1 LTR MaLR 14 548 0 5 1109 24 0 0 0 chr3 68790902 68790926 -90808857 + AT_rich Low_complexity Low_complexity 1 24 0 5 1109 460 272 45 1 chr3 68791019 68791146 -90808637 + B1F SINE Alu 5 135 -14 5 1109 276 380 14 27 chr3 68791146 68791159 -90808624 + ID_B1 SINE B4 117 223 -1 5 1109 750 244 78 93 chr3 68791262 68791647 -90808136 + MTE2a LTR MaLR 1 379 0 5 1109 225 303 13 0 chr3 68791705 68791781 -90808002 + ID4 SINE ID 3 79 -4 5 1109 924 131 0 0 chr3 68792107 68792260 -90807523 - L1_Mm LINE L1 -1626 4257 4105 5 1109 1020 134 5 30 chr3 68792277 68792477 -90807306 + Lx LINE L1 6458 6652 -2 5 1109 1223 48 0 13 chr3 68792721 68792870 -90806913 - B1_Mus2 SINE Alu 0 147 1 5 1109 257 240 147 0 chr3 68792921 68792996 -90806787 + B1F1 SINE Alu 13 98 -51 5 1109 192 200 0 0 chr3 68793045 68793095 -90806688 + G-rich Low_complexity Low_complexity 5 54 0 5 1109 344 333 144 15 chr3 68793138 68793333 -90806450 + L1MC4 LINE L1 6391 6610 -1432 5 1109 635 286 7 7 chr3 68793419 68793567 -90806216 - RSINE1 SINE B4 -17 148 1 5 1109 326 277 169 24 chr3 68793594 68793801 -90805982 + L1MC4 LINE L1 6702 6938 -1104 5 1109 907 201 108 0 chr3 68794090 68794284 -90805499 + B3 SINE B2 1 215 -1 5 1109 301 364 27 0 chr3 68794296 68794406 -90805377 + L1MC4 LINE L1 7312 7424 -618 5 1109 230 254 15 0 chr3 68794487 68794554 -90805229 + L1MC4 LINE L1 7506 7573 -309 5 1109 411 94 114 4 chr3 68794973 68795063 -90804720 + B1_Mur4 SINE Alu 1 117 0 5 1109 231 125 0 0 chr3 68795063 68795103 -90804680 + (A)n Simple_repeat Simple_repeat 1 40 0 5 1109 720 132 211 56 chr3 68795174 68795335 -90804448 - B3 SINE B2 -9 186 1 5 1109 201 39 0 0 chr3 68795472 68795498 -90804285 + (CA)n Simple_repeat Simple_repeat 2 27 0 5 1109 831 278 9 51 chr3 68795659 68795771 -90804012 - B3 SINE B2 -6 210 108 5 1109 1788 164 75 60 chr3 68795771 68796185 -90803598 + MTC LTR MaLR 2 421 0 5 1109 831 278 9 51 chr3 68796185 68796288 -90803495 - B3 SINE B2 -109 107 4 5 1109 629 207 21 43 chr3 68796294 68796435 -90803348 - B1_Mur1 SINE Alu -7 142 5 5 1109 27 29 0 0 chr3 68796443 68796477 -90803306 + AT_rich Low_complexity Low_complexity 1 34 0 5 1109 304 273 22 11 chr3 68796754 68796843 -90802940 + (TG)n Simple_repeat Simple_repeat 2 91 0 5 1109 290 301 10 0 chr3 68796856 68796959 -90802824 + L1MB7 LINE L1 6054 6157 -27 5 1109 3104 73 0 0 chr3 68796959 68797355 -90802428 + MTA_Mm LTR MaLR 1 396 0 5 1109 252 230 63 63 chr3 68797422 68797501 -90802282 + ID4_ SINE ID 1 79 -4 5 1109 815 127 52 0 chr3 68797927 68798061 -90801722 - B1_Mus1 SINE Alu -2 146 6 5 1109 232 295 181 0 chr3 68798897 68799002 -90800781 + PB1 SINE Alu 2 125 -2 5 1109 671 210 16 0 chr3 68799062 68799186 -90800597 + B1_Mur2 SINE Alu 18 143 -6 5 1109 21 0 0 0 chr3 68799318 68799339 -90800444 + AT_rich Low_complexity Low_complexity 1 21 0 5 1109 1265 51 0 0 chr3 68799342 68799499 -90800284 + B2_Mm2 SINE B2 2 158 -37 5 1109 243 0 0 0 chr3 68799500 68799527 -90800256 + (TAAA)n Simple_repeat Simple_repeat 3 29 0 5 1109 1999 186 124 27 chr3 68799915 68800397 -90799386 - RLTR24 LTR ERV1 0 529 1 5 1109 23 68 0 0 chr3 68800542 68800586 -90799197 + AT_rich Low_complexity Low_complexity 1 44 0 5 1109 555 277 101 72 chr3 68800964 68801201 -90798582 + MTEa LTR MaLR 6 249 -130 5 1109 1005 75 8 0 chr3 68801515 68801649 -90798134 - B2_Mm2 SINE B2 -60 135 1 5 1109 1123 90 61 22 chr3 68801890 68802042 -90797741 + B2_Mm1t SINE B2 1 160 -33 5 1109 243 0 0 0 chr3 68802042 68802069 -90797714 + (TAAA)n Simple_repeat Simple_repeat 3 29 0 5 1109 1123 90 61 22 chr3 68802069 68802097 -90797686 + B2_Mm1t SINE B2 161 188 -5 5 1109 233 281 79 50 chr3 68802254 68802355 -90797428 + MER46C DNA MER2_type 225 328 -10 5 1109 249 154 134 126 chr3 68802379 68802410 -90797373 + MT2B LTR ERVL 131 247 -351 5 1109 519 118 82 0 chr3 68802410 68802495 -90797288 + B1_Mus1 SINE Alu 2 93 -55 5 1109 302 224 0 0 chr3 68802514 68802581 -90797202 + RSINE1 SINE B4 2 68 -97 5 1109 805 190 6 47 chr3 68802580 68802751 -90797032 - ORR1D2 LTR MaLR -206 164 1 5 1109 375 73 0 0 chr3 68802760 68802815 -90796968 + (TC)n Simple_repeat Simple_repeat 2 56 0 5 1109 321 26 0 0 chr3 68802815 68802853 -90796930 + (CA)n Simple_repeat Simple_repeat 1 38 0 5 1109 459 196 173 47 chr3 68803169 68803319 -90796464 + ORR1D2 LTR MaLR 168 336 -34 5 1109 691 236 21 0 chr3 68803377 68803517 -90796266 - ID_B1 SINE B4 -2 222 80 5 1109 817 232 52 21 chr3 68803545 68803739 -90796044 + B3 SINE B2 10 209 -7 5 1109 333 47 0 0 chr3 68803879 68803922 -90795861 + (TTA)n Simple_repeat Simple_repeat 1 43 0 5 1109 751 285 97 50 chr3 68804126 68804332 -90795451 + B4A SINE B4 4 229 -63 5 1109 864 191 60 5 chr3 68804332 68804516 -90795267 + B2_Mm2 SINE B2 1 194 -1 5 1109 751 285 97 50 chr3 68804516 68804568 -90795215 + B4A SINE B4 230 274 -18 5 1109 351 65 0 0 chr3 68804585 68804631 -90795152 + (CA)n Simple_repeat Simple_repeat 1 46 0 5 1109 651 239 6 49 chr3 68804818 68804981 -90794802 + RSINE1 SINE B4 3 158 -7 5 1109 403 207 61 0 chr3 68805249 68805331 -90794452 - B1_Mur3 SINE Alu -60 89 3 5 1109 645 293 76 9 chr3 68805336 68805546 -90794237 - ID_B1 SINE B4 0 224 1 5 1109 283 333 17 43 chr3 68805661 68805777 -90794006 + PB1D9 SINE Alu 2 114 -6 5 1109 422 284 0 10 chr3 68805685 68805781 -90794002 + ID_B1 SINE B4 128 222 -2 5 1109 348 248 76 0 chr3 68806204 68806309 -90793474 - B1F1 SINE Alu 0 149 37 5 1109 657 246 39 16 chr3 68806542 68806724 -90793059 - B3A SINE B2 -10 188 3 5 1109 829 199 71 0 chr3 68806814 68807010 -90792773 - B3 SINE B2 -6 210 1 5 1109 1209 86 10 61 chr3 68807402 68807600 -90792183 + B2_Mm1t SINE B2 2 189 -4 5 1109 195 167 0 0 chr3 68809602 68809644 -90790139 + CT-rich Low_complexity Low_complexity 1 42 0 5 1109 245 312 153 0 chr3 68810483 68810627 -90789156 - B3A SINE B2 -3 195 30 5 1109 22 0 0 0 chr3 68811817 68811839 -90787944 + AT_rich Low_complexity Low_complexity 1 22 0 5 1109 180 0 0 0 chr3 68812357 68812377 -90787406 + (GA)n Simple_repeat Simple_repeat 1 20 0 5 1110 249 98 0 0 chr3 68812853 68812894 -90786889 + (CA)n Simple_repeat Simple_repeat 2 42 0 5 1110 27 0 0 0 chr3 68814003 68814030 -90785753 + AT_rich Low_complexity Low_complexity 1 27 0 5 1110 207 146 49 0 chr3 68814230 68814271 -90785512 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 5 1110 233 315 55 0 chr3 68816628 68816701 -90783082 + ID4 SINE ID 1 77 -6 5 1110 719 289 62 26 chr3 68816696 68816891 -90782892 - B3 SINE B2 -14 202 1 5 1110 495 331 94 1 chr3 68817147 68817311 -90782472 + B3A SINE B2 1 183 -15 5 1110 514 272 37 31 chr3 68817548 68817711 -90782072 + B3 SINE B2 48 211 -5 5 1110 693 192 13 40 chr3 68817793 68817945 -90781838 + B1_Mur2 SINE Alu 2 149 0 5 1110 376 212 141 0 chr3 68818615 68818714 -90781069 + PB1D9 SINE Alu 1 113 -7 5 1110 1214 61 0 0 chr3 68819357 68819505 -90780278 + B1_Mus1 SINE Alu 1 148 0 5 1110 1332 115 16 0 chr3 68819637 68819828 -90779955 + B2_Mm2 SINE B2 1 194 -1 5 1110 814 142 49 7 chr3 68820227 68820369 -90779414 + B1_Mus1 SINE Alu 1 148 0 5 1110 189 94 0 0 chr3 68820370 68820402 -90779381 + (G)n Simple_repeat Simple_repeat 1 32 0 5 1110 264 318 12 12 chr3 68821089 68821175 -90778608 - RSINE1 SINE B4 -76 89 4 5 1110 332 374 69 0 chr3 68821258 68821520 -90778263 - B4A SINE B4 -12 280 1 5 1110 576 275 242 16 chr3 68821541 68821789 -90777994 - Tigger7 DNA MER2_type -2169 322 19 5 1110 685 169 0 75 chr3 68822549 68822683 -90777100 + B1_Mus1 SINE Alu 25 148 0 6 1110 357 43 0 0 chr3 68822809 68822856 -90776927 + (T)n Simple_repeat Simple_repeat 1 47 0 6 1110 970 81 81 0 chr3 68822858 68822994 -90776789 - B1_Mus2 SINE Alu 0 147 1 6 1110 309 236 63 12 chr3 68823539 68823634 -90776149 - B1_Mur2 SINE Alu 0 149 56 6 1110 223 137 196 0 chr3 68823638 68823689 -90776094 - B1_Mur2 SINE Alu -22 127 67 6 1110 399 191 104 21 chr3 68823711 68823807 -90775976 - B1_Mur3 SINE Alu -23 126 23 6 1110 551 193 128 26 chr3 68823861 68823978 -90775805 - B3 SINE B2 -87 129 1 6 1110 594 250 28 35 chr3 68824063 68824204 -90775579 - RSINE1 SINE B4 -14 151 12 6 1110 713 251 65 5 chr3 68824302 68824502 -90775281 + B3 SINE B2 5 216 0 6 1110 584 233 102 7 chr3 68824751 68824898 -90774885 - B3A SINE B2 -36 162 2 6 1110 202 211 0 0 chr3 68825233 68825271 -90774512 + GA-rich Low_complexity Low_complexity 4 41 0 6 1110 287 287 88 53 chr3 68825408 68825522 -90774261 + PB1 SINE Alu 2 119 -8 6 1110 220 286 38 25 chr3 68826546 68826564 -90773219 + ID SINE ID 4 83 -141 6 1110 245 237 16 33 chr3 68826564 68826625 -90773158 + ID4 SINE ID 23 82 -1 6 1110 254 132 0 0 chr3 68826709 68826747 -90773036 + ID SINE ID 3 40 -184 6 1110 328 327 16 113 chr3 68826752 68826831 -90772952 + B1F SINE Alu 1 70 -79 6 1110 1324 88 44 0 chr3 68826831 68827012 -90772771 + B2_Mm2 SINE B2 1 189 -6 6 1110 328 327 16 113 chr3 68827012 68827056 -90772727 + B1F SINE Alu 71 112 -37 6 1110 684 264 102 128 chr3 68827193 68827344 -90772439 + B3A SINE B2 1 163 -35 6 1110 441 0 0 0 chr3 68827344 68827393 -90772390 + (CA)n Simple_repeat Simple_repeat 2 50 0 6 1110 328 264 102 128 chr3 68827393 68827428 -90772355 + B2_Mm1a SINE B2 155 182 -11 6 1110 21 36 0 0 chr3 68827475 68827503 -90772280 + AT_rich Low_complexity Low_complexity 1 28 0 6 1110 364 281 96 9 chr3 68828308 68828423 -90771360 - ID_B1 SINE B4 -12 212 88 6 1110 658 189 110 0 chr3 68828463 68828590 -90771193 + B1_Mur1 SINE Alu 2 142 -7 6 1110 649 289 19 121 chr3 68828599 68828855 -90770928 + 7SK RNA RNA 1 230 -101 6 1110 287 223 19 28 chr3 68829424 68829505 -90770278 + ID4_ SINE ID 2 87 -65 6 1110 233 206 65 52 chr3 68829593 68829670 -90770113 - MamRep605 Unknown Unknown -95 781 704 6 1110 297 0 0 0 chr3 68830002 68830035 -90769748 + (T)n Simple_repeat Simple_repeat 1 33 0 6 1110 395 233 158 0 chr3 68830176 68830296 -90769487 - B1_Mus1 SINE Alu -9 139 1 6 1110 310 258 122 9 chr3 68830649 68830809 -90768974 - L1M4 LINE L1 -690 5484 5305 6 1110 291 304 53 18 chr3 68830966 68831080 -90768703 - B1F2 SINE Alu -3 146 29 6 1110 459 111 206 29 chr3 68831246 68831348 -90768435 + PB1D9 SINE Alu 1 120 0 6 1110 641 237 195 0 chr3 68831932 68832101 -90767682 - B3 SINE B2 -1 215 14 6 1110 386 262 133 60 chr3 68832144 68832294 -90767489 + RSINE1 SINE B4 3 163 -2 6 1110 344 234 51 13 chr3 68832632 68832710 -90767073 - B1_Mm SINE Alu -21 126 46 6 1110 246 214 139 28 chr3 68832664 68832736 -90767047 - MT2B LTR ERVL -355 246 167 6 1110 775 120 17 8 chr3 68833471 68833589 -90766194 + PB1D9 SINE Alu 2 120 0 6 1110 270 0 0 0 chr3 68834520 68834550 -90765233 + (CA)n Simple_repeat Simple_repeat 2 31 0 6 1110 1415 69 11 0 chr3 68834589 68834777 -90765006 + B2_Mm1t SINE B2 2 191 -2 6 1110 332 216 0 149 chr3 68835040 68835127 -90764656 + PB1D9 SINE Alu 3 76 -44 6 1110 541 271 83 7 chr3 68835884 68836029 -90763754 + B3 SINE B2 40 195 -21 6 1110 377 249 135 65 chr3 68836251 68836426 -90763357 + B3A SINE B2 1 190 -8 6 1110 1126 35 0 59 chr3 68836426 68836579 -90763204 + B1_Mus2 SINE Alu 4 147 0 6 1110 24 0 0 0 chr3 68837503 68837527 -90762256 + AT_rich Low_complexity Low_complexity 1 24 0 6 1110 210 299 14 29 chr3 68837611 68837680 -90762103 + ID_B1 SINE B4 82 149 -75 6 1110 21 36 0 0 chr3 68839222 68839250 -90760533 + AT_rich Low_complexity Low_complexity 1 28 0 6 1110 1113 89 0 0 chr3 68842129 68842275 -90757508 + B1_Mus2 SINE Alu 2 147 0 6 1110 269 255 103 9 chr3 68842634 68842741 -90757042 - BC1_Mm scRNA scRNA -22 130 14 6 1110 285 302 131 49 chr3 68842932 68843054 -90756729 + B3A SINE B2 1 132 -66 6 1110 316 264 14 14 chr3 68843461 68843534 -90756249 + ID4_ SINE ID 2 74 -9 6 1110 1087 69 14 0 chr3 68843571 68843715 -90756068 + B1_Mus1 SINE Alu 2 147 -1 6 1110 210 71 0 0 chr3 68843727 68843755 -90756028 + (GAAAA)n Simple_repeat Simple_repeat 2 29 0 6 1110 1268 169 171 28 chr3 68844079 68844401 -90755382 - ORR1D2 LTR MaLR -2 368 1 6 1110 399 282 47 16 chr3 68845459 68845650 -90754133 + L1MB3 LINE L1 5952 6148 -35 6 1110 271 214 71 12 chr3 68846098 68846183 -90753600 - ID_B1 SINE B4 -1 223 134 6 1110 210 257 41 139 chr3 68846183 68846215 -90753568 - PB1D9 SINE Alu 0 115 11 6 1110 24 0 0 0 chr3 68846230 68846254 -90753529 + AT_rich Low_complexity Low_complexity 1 24 0 6 1110 293 160 0 0 chr3 68846610 68846660 -90753123 - B1_Mm SINE Alu 0 147 98 6 1110 23 0 0 0 chr3 68846660 68846683 -90753100 + AT_rich Low_complexity Low_complexity 1 23 0 6 1110 962 141 0 69 chr3 68846840 68847015 -90752768 + B2_Mm2 SINE B2 2 164 -31 6 1110 636 143 108 8 chr3 68847324 68847444 -90752339 + B1_Mus1 SINE Alu 1 132 -16 6 1110 180 97 0 0 chr3 68847445 68847476 -90752307 + (T)n Simple_repeat Simple_repeat 1 31 0 6 1110 295 241 53 44 chr3 68847932 68848045 -90751738 - PB1D9 SINE Alu -6 114 1 6 1110 282 0 103 0 chr3 68848535 68848593 -90751190 + (CGAGG)n Simple_repeat Simple_repeat 5 68 0 6 1110 30 0 0 0 chr3 68848664 68848694 -90751089 + GC_rich Low_complexity Low_complexity 1 30 0 6 1110 422 223 241 41 chr3 68849913 68850065 -90749718 + B3 SINE B2 30 198 0 6 1110 561 234 126 32 chr3 68850092 68850282 -90749501 + B3 SINE B2 9 216 0 6 1110 334 381 87 50 chr3 68850260 68850661 -90749122 - MER34A LTR ERV1 -137 434 19 6 1110 549 239 29 22 chr3 68850713 68850850 -90748933 + B1_Mus1 SINE Alu 2 139 -9 6 1110 216 0 0 0 chr3 68850850 68850874 -90748909 + (CA)n Simple_repeat Simple_repeat 2 25 0 6 1110 374 289 0 10 chr3 68850923 68851021 -90748762 + B1F SINE Alu 45 141 -8 6 1110 235 366 49 0 chr3 68851055 68851074 -90748709 + B4A SINE B4 66 146 -141 6 1110 239 345 0 0 chr3 68851074 68851132 -90748651 + B1F1 SINE Alu 1 58 -91 6 1110 187 336 139 25 chr3 68851215 68851337 -90748446 + L4 LINE RTE 1680 1815 -214 6 1110 2530 277 26 21 chr3 68852037 68852837 -90746946 - Lx9 LINE L1 -456 7188 6385 6 1110 189 0 0 0 chr3 68852867 68852888 -90746895 + (CA)n Simple_repeat Simple_repeat 2 22 0 6 1110 549 0 0 0 chr3 68853233 68853294 -90746489 + (TC)n Simple_repeat Simple_repeat 1 61 0 6 1110 443 279 58 22 chr3 68854017 68854156 -90745627 + RSINE1 SINE B4 3 146 -19 6 1110 442 269 0 0 chr3 68854503 68854607 -90745176 + B3 SINE B2 3 106 -110 6 1110 228 224 215 7 chr3 68854970 68855105 -90744678 + L1MC4a LINE L1 5840 6002 -1880 6 1110 743 0 11 0 chr3 68855116 68855203 -90744580 + (TG)n Simple_repeat Simple_repeat 2 89 0 6 1110 1346 201 63 99 chr3 68855472 68855854 -90743929 + MTE2b LTR MaLR 2 369 -10 6 1110 518 303 0 0 chr3 68856085 68856230 -90743553 - RSINE1 SINE B4 -18 147 3 6 1110 203 0 0 36 chr3 68856320 68856348 -90743435 + (TAAAA)n Simple_repeat Simple_repeat 1 27 0 6 1110 23 0 0 0 chr3 68856355 68856378 -90743405 + AT_rich Low_complexity Low_complexity 1 23 0 6 1110 672 243 7 14 chr3 68856391 68856537 -90743246 + B1_Mm SINE Alu 3 147 0 6 1110 435 38 0 0 chr3 68856539 68856592 -90743191 + (GGAA)n Simple_repeat Simple_repeat 3 55 0 6 1110 405 0 0 0 chr3 68856623 68856668 -90743115 + (GA)n Simple_repeat Simple_repeat 2 46 0 6 1110 561 267 0 85 chr3 68856830 68856870 -90742913 + RSINE1 SINE B4 2 34 -131 6 1110 1088 41 7 65 chr3 68856870 68857025 -90742758 + B1_Mus2 SINE Alu 1 146 -1 6 1110 561 267 0 85 chr3 68857025 68857148 -90742635 + RSINE1 SINE B4 35 151 -14 6 1110 1001 90 0 7 chr3 68857580 68857726 -90742057 - B1_Mur4 SINE Alu 0 150 6 6 1110 469 238 38 140 chr3 68857726 68857761 -90742022 - B4 SINE B4 -69 218 57 6 1110 312 302 132 0 chr3 68857767 68857873 -90741910 - PB1D9 SINE Alu 0 120 1 6 1110 296 333 71 12 chr3 68858187 68858357 -90741426 + MER5A DNA MER1_type 6 185 -4 6 1110 485 305 5 128 chr3 68858390 68858578 -90741205 + RSINE1 SINE B4 1 165 0 6 1110 312 278 42 0 chr3 68859620 68859692 -90740091 - ID4 SINE ID -8 75 1 6 1110 22 0 0 0 chr3 68861070 68861092 -90738691 + AT_rich Low_complexity Low_complexity 1 22 0 6 1110 549 206 95 7 chr3 68861119 68861256 -90738527 - B1F2 SINE Alu 0 149 1 6 1110 633 270 68 31 chr3 68861256 68861273 -90738510 - B3A SINE B2 -8 190 173 6 1110 315 0 0 0 chr3 68861273 68861308 -90738475 + (TG)n Simple_repeat Simple_repeat 1 35 0 6 1110 633 270 68 31 chr3 68861308 68861471 -90738312 - B3A SINE B2 -26 172 1 6 1110 357 268 6 19 chr3 68861481 68861637 -90738146 + CT-rich Low_complexity Low_complexity 2 155 0 6 1110 252 200 0 0 chr3 68861639 68861694 -90738089 + C-rich Low_complexity Low_complexity 5 59 0 6 1110 678 243 13 13 chr3 68861709 68861859 -90737924 - B1_Mur4 SINE Alu 0 150 1 7 1110 474 188 0 0 chr3 68861991 68862092 -90737691 + GA-rich Low_complexity Low_complexity 2 102 0 7 1110 1650 214 77 71 chr3 68862738 68863086 -90736697 - RLTR11A2 LTR ERVK -14 513 160 7 1110 1294 65 35 0 chr3 68863086 68863256 -90736527 - B2_Mm2 SINE B2 -19 176 1 7 1110 1650 214 77 71 chr3 68863256 68863416 -90736367 - RLTR11A2 LTR ERVK -368 159 2 7 1110 273 308 31 0 chr3 68863474 68863539 -90736244 + ID2 SINE ID 12 78 -5 7 1110 447 19 0 0 chr3 68863550 68863602 -90736181 + (TGGA)n Simple_repeat Simple_repeat 4 55 0 7 1110 310 296 32 36 chr3 68863989 68864092 -90735691 + PB1 SINE Alu 6 110 -17 7 1110 1139 69 0 0 chr3 68864282 68864427 -90735356 + B1_Mus1 SINE Alu 2 146 -2 7 1110 243 0 0 0 chr3 68864466 68864493 -90735290 + (A)n Simple_repeat Simple_repeat 1 27 0 7 1110 180 0 0 0 chr3 68864497 68864517 -90735266 + (CAA)n Simple_repeat Simple_repeat 2 21 0 7 1110 264 282 76 17 chr3 68864552 68864671 -90735112 + MER115 DNA Tip100 544 669 -24 7 1110 1412 168 91 15 chr3 68864733 68865049 -90734734 + ORR1B1 LTR MaLR 24 330 -37 7 1110 412 123 0 0 chr3 68865083 68865148 -90734635 + ORR1B1 LTR MaLR 322 386 -8 7 1110 3426 206 66 7 chr3 68865152 68865980 -90733803 + ORR1B1-int LTR MaLR 1 877 -632 7 1110 391 182 121 0 chr3 68865971 68866070 -90733713 - Tigger1 DNA MER2_type -1061 1357 1247 7 1110 624 151 131 31 chr3 68866077 68866199 -90733584 + B1_Mur4 SINE Alu 8 143 -7 7 1110 465 50 0 0 chr3 68866199 68866259 -90733524 + (CAAAC)n Simple_repeat Simple_repeat 5 64 0 7 1110 945 228 125 23 chr3 68866288 68866544 -90733239 - Tigger1 DNA MER2_type -1166 1252 971 7 1110 233 286 64 13 chr3 68866629 68866707 -90733076 + ID4 SINE ID 1 82 -1 7 1110 264 279 37 38 chr3 68866965 68867084 -90732699 + ID4 SINE ID 2 117 -35 7 1110 1148 114 62 0 chr3 68867120 68867296 -90732487 - B2_Mm2 SINE B2 -7 188 2 7 1110 215 207 313 12 chr3 68867424 68867507 -90732276 + B1_Mus1 SINE Alu 6 113 -35 7 1110 292 59 0 38 chr3 68867511 68867564 -90732219 + (CAAAC)n Simple_repeat Simple_repeat 2 52 0 7 1110 252 276 21 84 chr3 68867590 68867609 -90732174 + MT2B LTR ERVL 150 162 -439 7 1110 380 218 98 10 chr3 68867609 68867711 -90732072 + B1_Mus2 SINE Alu 3 113 -34 7 1110 593 199 68 15 chr3 68868171 68868304 -90731479 + B1_Mur1 SINE Alu 7 146 -3 7 1110 252 319 34 48 chr3 68868878 68869093 -90730690 - L1M5 LINE L1 -421 5743 5535 7 1110 242 260 49 49 chr3 68869977 68870058 -90729725 + ID2 SINE ID 2 82 -1 7 1110 547 264 0 32 chr3 68870170 68870295 -90729488 - B1_Mus1 SINE Alu -10 138 18 7 1110 248 281 17 17 chr3 68870334 68870392 -90729391 - ID4 SINE ID -14 69 12 7 1110 466 246 55 0 chr3 68870475 68870585 -90729198 + PB1D10 SINE Alu 2 117 0 7 1110 283 304 35 35 chr3 68871087 68871203 -90728580 - L2c LINE L2 -13 3374 3259 7 1110 234 270 86 48 chr3 68872495 68872600 -90727183 + RMER21A LTR ERV1 596 704 -243 7 1110 575 271 22 8 chr3 68872699 68872833 -90726950 - RSINE1 SINE B4 -28 137 2 7 1110 1262 100 11 22 chr3 68873276 68873460 -90726323 - B2_Mm1t SINE B2 -10 183 2 7 1110 259 192 19 0 chr3 68873759 68873811 -90725972 - ID SINE ID -170 54 2 7 1110 27 29 0 0 chr3 68874048 68874082 -90725701 + AT_rich Low_complexity Low_complexity 1 34 0 7 1110 669 270 213 39 chr3 68874449 68874904 -90724879 + MLT1E1A LTR MaLR 44 631 -23 7 1110 324 239 83 42 chr3 68875584 68875680 -90724103 - PB1D10 SINE Alu -7 110 11 7 1110 183 80 0 0 chr3 68877943 68877968 -90721815 + (TA)n Simple_repeat Simple_repeat 2 26 0 7 1110 514 300 14 21 chr3 68878452 68878595 -90721188 + B1F2 SINE Alu 6 147 -2 7 1110 771 173 14 28 chr3 68878719 68878862 -90720921 + B1_Mur3 SINE Alu 9 149 0 7 1110 210 71 0 0 chr3 68878865 68878893 -90720890 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 7 1110 278 301 41 0 chr3 68879017 68879090 -90720693 - B3A SINE B2 -118 80 5 7 1110 182 37 37 0 chr3 68879112 68879139 -90720644 + (TCCA)n Simple_repeat Simple_repeat 3 30 0 7 1110 344 214 0 28 chr3 68879140 68879212 -90720571 - RSINE1 SINE B4 -10 155 86 7 1110 201 121 0 0 chr3 68879253 68879286 -90720497 + (TATG)n Simple_repeat Simple_repeat 2 34 0 7 1110 373 314 12 78 chr3 68879286 68879452 -90720331 - RSINE1 SINE B4 -8 157 3 7 1110 972 185 14 74 chr3 68879532 68879748 -90720035 - B3 SINE B2 -12 204 2 7 1110 274 279 18 80 chr3 68879789 68879902 -90719881 + PB1D10 SINE Alu 5 110 -7 7 1110 504 309 7 61 chr3 68880145 68880293 -90719490 - ID_B1 SINE B4 -2 222 83 7 1110 347 88 0 50 chr3 68880396 68880456 -90719327 - B1_Mur3 SINE Alu 0 149 93 7 1110 1577 31 0 45 chr3 68881319 68881520 -90718263 + B2_Mm1a SINE B2 2 193 0 7 1110 463 371 63 9 chr3 68882728 68882976 -90716807 + L2c LINE L2 2918 3187 -188 7 1110 431 353 98 12 chr3 68883770 68884014 -90715769 - B4A SINE B4 -27 265 1 7 1110 1173 61 0 0 chr3 68884547 68884694 -90715089 + B1_Mm SINE Alu 1 147 0 7 1110 378 57 0 0 chr3 68884694 68884747 -90715036 + (A)n Simple_repeat Simple_repeat 1 53 0 7 1110 222 208 0 0 chr3 68884886 68884934 -90714849 + (CA)n Simple_repeat Simple_repeat 1 48 0 7 1110 23 33 0 0 chr3 68884970 68885000 -90714783 + AT_rich Low_complexity Low_complexity 1 30 0 7 1110 222 354 0 12 chr3 68885810 68885893 -90713890 - PB1D10 SINE Alu -8 109 28 7 1110 266 229 42 0 chr3 68885924 68886042 -90713741 + (TA)n Simple_repeat Simple_repeat 1 123 0 7 1110 3085 254 86 35 chr3 68886096 68887160 -90712623 + Lx9 LINE L1 6321 7438 -206 7 1110 23 0 0 0 chr3 68887299 68887322 -90712461 + AT_rich Low_complexity Low_complexity 1 23 0 7 1110 330 244 43 43 chr3 68887578 68887672 -90712111 - RSINE1 SINE B4 -69 96 3 7 1110 207 0 0 0 chr3 68888240 68888263 -90711520 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 7 1110 482 270 0 0 chr3 68888269 68888358 -90711425 - PB1D9 SINE Alu -29 91 3 7 1110 252 0 0 0 chr3 68888901 68888929 -90710854 + (CAA)n Simple_repeat Simple_repeat 1 28 0 7 1110 309 89 0 0 chr3 68889212 68889257 -90710526 + (CA)n Simple_repeat Simple_repeat 1 45 0 7 1110 303 262 30 15 chr3 68889399 68889465 -90710318 + tRNA-Ala-GCY_ tRNA tRNA 4 70 -5 7 1110 23 0 0 0 chr3 68889580 68889603 -90710180 + AT_rich Low_complexity Low_complexity 1 23 0 7 1110 1574 179 92 18 chr3 68889992 68890412 -90709371 + Lx5 LINE L1 5758 6269 -781 7 1110 351 0 0 0 chr3 68890755 68890794 -90708989 + (TG)n Simple_repeat Simple_repeat 2 40 0 7 1110 266 241 19 0 chr3 68890804 68890858 -90708925 - ID SINE ID -166 58 4 7 1110 801 146 29 21 chr3 68891600 68891740 -90708043 - B1_Mur3 SINE Alu -8 141 1 7 1110 225 0 0 0 chr3 68891914 68891939 -90707844 + (CCAA)n Simple_repeat Simple_repeat 2 26 0 7 1110 246 262 49 12 chr3 68892518 68892599 -90707184 + PB1D10 SINE Alu 34 117 0 7 1110 435 119 0 0 chr3 68893274 68893341 -90706442 + (CA)n Simple_repeat Simple_repeat 1 67 0 7 1110 22 56 0 0 chr3 68894088 68894124 -90705659 + AT_rich Low_complexity Low_complexity 1 36 0 7 1110 377 298 116 0 chr3 68894385 68894506 -90705277 + ID_B1 SINE B4 88 222 -2 7 1110 677 153 39 31 chr3 68894664 68894781 -90705002 + URR1A DNA MER1_type 36 153 -73 7 1110 1938 147 25 12 chr3 68894781 68895104 -90704679 + ORR1A2 LTR MaLR 1 327 0 7 1110 249 327 131 0 chr3 68895316 68895423 -90704360 + B1F1 SINE Alu 9 129 -20 7 1110 333 302 294 0 chr3 68895476 68895602 -90704181 + RSINE1 SINE B4 3 165 0 7 1110 333 19 36 18 chr3 68895665 68895720 -90704063 + (CAAA)n Simple_repeat Simple_repeat 2 57 0 7 1110 750 122 57 108 chr3 68895788 68895945 -90703838 - B1_Mur3 SINE Alu 0 149 1 7 1110 532 179 0 21 chr3 68895949 68896046 -90703737 - PB1D7 SINE Alu 0 120 26 7 1110 21 36 0 0 chr3 68896402 68896430 -90703353 + AT_rich Low_complexity Low_complexity 1 28 0 7 1110 429 276 17 13 chr3 68897223 68897466 -90702317 + (TG)n Simple_repeat Simple_repeat 1 244 0 7 1110 1134 63 0 0 chr3 68897777 68897920 -90701863 - B1_Mus2 SINE Alu 0 147 5 7 1110 286 216 352 0 chr3 68897921 68898009 -90701774 + PB1D7 SINE Alu 1 119 -1 7 1110 506 248 0 9 chr3 68898393 68898499 -90701284 - PB1D10 SINE Alu -11 106 2 7 1110 1272 116 5 11 chr3 68898990 68899181 -90700602 + B2_Mm2 SINE B2 3 192 -3 7 1110 215 317 12 47 chr3 68899273 68899359 -90700424 - PB1D7 SINE Alu -2 118 36 7 1110 22 0 0 0 chr3 68899414 68899436 -90700347 + AT_rich Low_complexity Low_complexity 1 22 0 7 1110 26 64 0 0 chr3 68899968 68900015 -90699768 + AT_rich Low_complexity Low_complexity 1 47 0 7 1110 205 277 0 0 chr3 68900059 68900106 -90699677 + (TG)n Simple_repeat Simple_repeat 2 48 0 7 1110 304 253 165 0 chr3 68900133 68900212 -90699571 - B1F2 SINE Alu -56 93 2 7 1110 1277 83 72 0 chr3 68900683 68900864 -90698919 + B2_Mm2 SINE B2 1 194 -1 7 1110 831 273 32 5 chr3 68901206 68901423 -90698360 - ID_B1 SINE B4 0 224 2 7 1110 2740 241 107 67 chr3 68901455 68901886 -90697897 + Lx8 LINE L1 6409 6848 -625 7 1110 243 61 0 0 chr3 68901886 68901919 -90697864 + (TTG)n Simple_repeat Simple_repeat 2 34 0 7 1110 2740 241 107 67 chr3 68901919 68902404 -90697379 + Lx8 LINE L1 6849 7361 -112 7 1110 437 0 0 19 chr3 68902439 68902493 -90697290 + (CA)n Simple_repeat Simple_repeat 2 54 0 7 1110 919 233 26 16 chr3 68902687 68902879 -90696904 - B3 SINE B2 -4 212 19 7 1110 1915 112 10 3 chr3 68902894 68903182 -90696601 - L1_Mus3 LINE L1 -7 6631 6342 8 1110 2390 131 209 0 chr3 68903182 68903626 -90696157 + L1_Mus3 LINE L1 5812 6348 -288 8 1110 422 326 100 11 chr3 68903684 68903864 -90695919 - Charlie1a DNA MER1_type -1249 206 11 8 1110 267 103 0 0 chr3 68904233 68904272 -90695511 + (TG)n Simple_repeat Simple_repeat 2 40 0 8 1110 515 317 157 12 chr3 68904277 68904532 -90695251 - B4 SINE B4 0 292 1 8 1110 1068 41 7 40 chr3 68904633 68904785 -90694998 + B1_Mus1 SINE Alu 2 148 0 8 1110 23 0 0 0 chr3 68906180 68906203 -90693580 + AT_rich Low_complexity Low_complexity 1 23 0 8 1110 191 312 151 0 chr3 68906292 68906385 -90693398 + L2 LINE L2 2464 2570 -849 8 1110 296 291 39 112 chr3 68906398 68906523 -90693260 + L2 LINE L2 2641 2750 -669 8 1110 613 247 120 29 chr3 68906523 68906698 -90693085 - B3A SINE B2 -6 192 2 8 1110 296 291 39 112 chr3 68906698 68906750 -90693033 + L2 LINE L2 2751 2805 -614 8 1110 378 61 0 0 chr3 68906781 68906830 -90692953 + (CA)n Simple_repeat Simple_repeat 1 49 0 8 1110 234 191 0 37 chr3 68906940 68906994 -90692789 + MIR SINE MIR 102 154 -54 8 1110 433 216 115 39 chr3 68907028 68907158 -90692625 - B1_Mur2 SINE Alu -5 144 5 8 1110 228 247 196 49 chr3 68907198 68907300 -90692483 - PB1D10 SINE Alu 0 117 1 8 1110 22 35 0 0 chr3 68908582 68908611 -90691172 + AT_rich Low_complexity Low_complexity 1 29 0 8 1110 248 139 0 122 chr3 68908627 68908676 -90691107 + B1F SINE Alu 100 142 -7 8 1110 26 0 0 0 chr3 68909281 68909307 -90690476 + AT_rich Low_complexity Low_complexity 1 26 0 8 1110 514 174 252 0 chr3 68909737 68909852 -90689931 + B1_Mus1 SINE Alu 3 146 -2 8 1110 293 325 96 9 chr3 68910078 68910193 -90689590 + PB1 SINE Alu 3 127 0 8 1110 180 301 45 67 chr3 68910206 68910295 -90689488 - L2c LINE L2 -8 3379 3293 8 1110 360 301 101 14 chr3 68910305 68910443 -90689340 + RSINE1 SINE B4 4 153 -12 8 1110 23 0 0 0 chr3 68910569 68910592 -90689191 + AT_rich Low_complexity Low_complexity 1 23 0 8 1110 315 0 0 0 chr3 68910592 68910627 -90689156 + (CA)n Simple_repeat Simple_repeat 2 36 0 8 1110 449 241 62 9 chr3 68910745 68910858 -90688925 - PB1D9 SINE Alu 0 120 2 8 1110 225 65 0 0 chr3 68910973 68911004 -90688779 + (TTA)n Simple_repeat Simple_repeat 2 32 0 8 1110 382 261 8 73 chr3 68911035 68911159 -90688624 + PB1D7 SINE Alu 1 116 -4 8 1110 1254 275 55 87 chr3 68911173 68911364 -90688419 + L1MA4 LINE L1 5386 5559 -741 8 1110 642 257 201 17 chr3 68911364 68911538 -90688245 + B3 SINE B2 1 206 -10 8 1110 1254 275 55 87 chr3 68911538 68912036 -90687747 + L1MA4 LINE L1 5560 6053 -247 8 1110 497 249 23 8 chr3 68913071 68913192 -90686591 + B1F SINE Alu 1 120 0 8 1110 720 264 69 15 chr3 68913198 68913402 -90686381 + B3 SINE B2 1 215 -1 8 1110 363 246 48 56 chr3 68913446 68913571 -90686212 + B1_Mur2 SINE Alu 26 149 0 8 1110 21 0 0 0 chr3 68913732 68913753 -90686030 + AT_rich Low_complexity Low_complexity 1 21 0 8 1110 1166 207 0 14 chr3 68914222 68914438 -90685345 - B3 SINE B2 -3 213 1 8 1110 25 0 0 0 chr3 68914440 68914465 -90685318 + AT_rich Low_complexity Low_complexity 1 25 0 8 1110 213 39 0 0 chr3 68914531 68914557 -90685226 + (TTCC)n Simple_repeat Simple_repeat 3 28 0 8 1110 930 40 136 0 chr3 68914562 68914687 -90685096 - B1_Mus2 SINE Alu -5 142 1 8 1110 468 250 10 10 chr3 68914963 68915060 -90684723 + B3A SINE B2 1 97 -101 8 1110 189 74 0 0 chr3 68915079 68915106 -90684677 + (CA)n Simple_repeat Simple_repeat 1 27 0 8 1110 222 290 32 0 chr3 68915181 68915243 -90684540 - L2a LINE L2 -77 3349 3286 8 1110 203 329 76 0 chr3 68915488 68915567 -90684216 - L2a LINE L2 -521 2898 2814 8 1110 745 138 32 8 chr3 68915594 68915718 -90684065 + B1_Mur3 SINE Alu 13 139 -10 8 1110 525 32 0 0 chr3 68915834 68915897 -90683886 + (CA)n Simple_repeat Simple_repeat 2 64 0 8 1110 260 277 66 51 chr3 68915944 68916081 -90683702 - L2a LINE L2 -852 2567 2429 8 1110 355 330 0 9 chr3 68916143 68916253 -90683530 + PB1D10 SINE Alu 1 109 -8 8 1110 219 186 0 0 chr3 68916423 68916466 -90683317 + GA-rich Low_complexity Low_complexity 2 44 0 8 1110 295 299 50 30 chr3 68916522 68916622 -90683161 + RSINE1 SINE B4 1 102 -63 8 1110 558 234 235 28 chr3 68917152 68917403 -90682380 - L1M3 LINE L1 -407 5776 5474 8 1110 461 280 0 0 chr3 68917884 68917991 -90681792 + PB1D10 SINE Alu 4 110 -7 8 1110 195 69 0 0 chr3 68918400 68918429 -90681354 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 8 1110 259 239 56 0 chr3 68918429 68918500 -90681283 - ID4_ SINE ID -6 77 3 8 1110 39 0 0 0 chr3 68918509 68918548 -90681235 + AT_rich Low_complexity Low_complexity 1 39 0 8 1110 296 260 197 42 chr3 68919558 68919771 -90680012 - L1MB8 LINE L1 -5 6173 5928 8 1110 247 250 21 64 chr3 68919871 68919965 -90679818 - MurSatRep1 Unknown Unknown -1853 284 195 8 1110 1084 298 114 71 chr3 68920204 68920756 -90679027 + MER21B LTR ERV1 185 760 -103 8 1110 259 202 22 67 chr3 68920880 68920970 -90678813 - L1MB8 LINE L1 -275 5903 5818 8 1110 272 250 109 0 chr3 68921527 68921591 -90678192 - MTEa LTR MaLR -54 325 255 8 1110 307 264 73 52 chr3 68921783 68921879 -90677904 - PB1D10 SINE Alu -13 104 7 8 1110 907 171 110 21 chr3 68922050 68922241 -90677542 + B3 SINE B2 4 211 -5 8 1110 346 186 177 55 chr3 68922306 68922448 -90677335 + B1_Mur4 SINE Alu 3 141 -8 8 1110 301 308 0 0 chr3 68922455 68922533 -90677250 + RSINE1 SINE B4 44 121 -44 8 1110 419 289 79 88 chr3 68922617 68922833 -90676950 + Charlie1a DNA MER1_type 12 225 -1230 8 1110 971 221 15 0 chr3 68922865 68923060 -90676723 + B3 SINE B2 1 198 -18 8 1110 485 237 63 42 chr3 68923068 68923202 -90676581 + B1_Mur1 SINE Alu 2 139 -10 8 1110 402 21 0 0 chr3 68923202 68923249 -90676534 + (CATA)n Simple_repeat Simple_repeat 3 49 0 8 1110 346 120 0 0 chr3 68923249 68923299 -90676484 + HAL1-3A_ME LINE L1 1976 2025 -833 8 1110 1213 253 77 152 chr3 68923344 68923969 -90675814 + Charlie1a DNA MER1_type 417 994 -461 8 1110 581 138 156 0 chr3 68924320 68924429 -90675354 + B1_Mus2 SINE Alu 21 146 -1 8 1110 197 132 0 26 chr3 68924574 68924613 -90675170 + CT-rich Low_complexity Low_complexity 2 39 0 8 1110 289 162 6 10 chr3 68924614 68924670 -90675113 - B1F SINE Alu -20 97 43 8 1110 383 283 61 9 chr3 68924686 68924800 -90674983 - B3 SINE B2 -96 120 1 8 1110 829 241 115 0 chr3 68925497 68925688 -90674095 + B3 SINE B2 1 213 -3 8 1110 344 335 18 55 chr3 68925720 68925884 -90673899 + B4A SINE B4 67 224 -68 8 1110 791 225 22 0 chr3 68925748 68925886 -90673897 + B1_Mur1 SINE Alu 9 149 0 8 1110 192 40 0 0 chr3 68927011 68927036 -90672747 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 8 1110 479 306 50 35 chr3 68927385 68927585 -90672198 + MER33 DNA MER1_type 5 207 -117 8 1110 198 194 45 0 chr3 68927716 68927783 -90672000 + (TA)n Simple_repeat Simple_repeat 1 70 0 8 1110 303 261 87 0 chr3 68927934 68928003 -90671780 - ID4 SINE ID 0 83 9 8 1110 295 287 18 133 chr3 68928297 68928462 -90671321 + ID_B1 SINE B4 79 224 0 8 1110 899 284 159 19 chr3 68928488 68929015 -90670768 + L1MB8 LINE L1 5577 6177 -1 8 1110 365 267 88 7 chr3 68929270 68929417 -90670366 + B3 SINE B2 58 216 0 8 1110 297 75 0 0 chr3 68930164 68930204 -90669579 + (TTTC)n Simple_repeat Simple_repeat 1 40 0 8 1110 29 84 0 0 chr3 68930526 68930597 -90669186 + GC_rich Low_complexity Low_complexity 1 71 0 8 1110 303 294 182 44 chr3 68930707 68930910 -90668873 + L1MDb LINE L1 506 736 -5673 8 1110 183 80 0 0 chr3 68930936 68930961 -90668822 + (CGG)n Simple_repeat Simple_repeat 3 27 0 8 1110 342 0 0 0 chr3 68931966 68932004 -90667779 + (TAA)n Simple_repeat Simple_repeat 1 38 0 8 1110 350 235 136 10 chr3 68932092 68932195 -90667588 + PB1D10 SINE Alu 1 116 -1 8 1110 477 249 159 6 chr3 68932818 68932988 -90666795 - B4A SINE B4 -55 237 42 8 1110 224 382 29 10 chr3 68933151 68933254 -90666529 + PB1D10 SINE Alu 1 105 -12 8 1110 336 225 109 33 chr3 68933280 68933372 -90666411 + PB1D10 SINE Alu 12 110 -7 8 1110 344 312 20 40 chr3 68934159 68934309 -90665474 - B1F2 SINE Alu 0 149 3 8 1110 346 281 34 0 chr3 68934614 68934703 -90665080 - PB1D10 SINE Alu 0 117 26 8 1110 530 292 0 23 chr3 68934756 68934889 -90664894 - ID_B1 SINE B4 -17 207 78 8 1110 281 340 129 0 chr3 68934890 68935037 -90664746 - MIR SINE MIR -68 194 29 8 1110 235 347 42 0 chr3 68935073 68935168 -90664615 - MIRb SINE MIR -92 176 78 8 1110 210 71 0 0 chr3 68936090 68936118 -90663665 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 8 1110 357 189 149 43 chr3 68937012 68937106 -90662677 - PB1D10 SINE Alu -1 116 13 8 1110 481 180 0 115 chr3 68937252 68937365 -90662418 + B1_Mur1 SINE Alu 21 120 -29 8 1110 571 162 116 9 chr3 68937453 68937565 -90662218 - B1F SINE Alu -1 148 25 8 1110 507 237 88 9 chr3 68937887 68938043 -90661740 + MER45A DNA Tip100 1 178 0 8 1110 373 304 24 16 chr3 68938395 68938522 -90661261 - L1M5 LINE L1 -464 5660 5533 8 1110 540 167 91 119 chr3 68938811 68938954 -90660829 - B1_Mus1 SINE Alu 0 148 10 8 1110 508 270 57 21 chr3 68939090 68939230 -90660553 - ID_B1 SINE B4 0 224 80 8 1110 247 214 113 14 chr3 68939273 68939344 -90660439 - L1MC4 LINE L1 -9 8033 7956 8 1110 449 252 143 0 chr3 68939971 68940090 -90659693 - ID_B1 SINE B4 -6 218 83 8 1110 227 272 136 19 chr3 68940600 68940722 -90659061 - MIRc SINE MIR -114 154 30 8 1110 522 282 6 69 chr3 68940923 68940954 -90658829 - RSINE1 SINE B4 0 165 139 8 1110 234 0 0 0 chr3 68940954 68940980 -90658803 + (CA)n Simple_repeat Simple_repeat 2 27 0 9 1110 522 282 6 69 chr3 68940980 68941123 -90658660 - RSINE1 SINE B4 -27 138 2 8 1110 506 251 97 6 chr3 68941150 68941326 -90658457 - B3A SINE B2 -6 192 1 9 1110 432 0 0 0 chr3 68941332 68941380 -90658403 + (TA)n Simple_repeat Simple_repeat 2 49 0 9 1110 21 0 0 0 chr3 68941576 68941597 -90658186 + AT_rich Low_complexity Low_complexity 1 21 0 9 1110 313 182 98 61 chr3 68941796 68941878 -90657905 - RSINE1 SINE B4 -1 164 80 9 1110 470 149 11 0 chr3 68941968 68942055 -90657728 + (TA)n Simple_repeat Simple_repeat 2 89 0 9 1110 1017 211 0 0 chr3 68942636 68942845 -90656938 + B3 SINE B2 2 210 -6 9 1110 205 130 130 0 chr3 68943416 68943462 -90656321 + MIRc SINE MIR 96 147 -121 9 1111 507 279 6 36 chr3 68944058 68944225 -90655558 - RSINE1 SINE B4 -1 164 3 9 1111 542 258 42 83 chr3 68944400 68944616 -90655167 - B4A SINE B4 -10 282 76 9 1111 325 256 12 35 chr3 68945116 68945201 -90654582 - B4A SINE B4 -208 84 2 9 1111 524 215 47 0 chr3 68945957 68946064 -90653719 - B1_Mur1 SINE Alu -37 112 1 9 1111 884 239 33 19 chr3 68946077 68946290 -90653493 - B3 SINE B2 0 216 1 9 1111 237 132 0 0 chr3 68946299 68946337 -90653446 + (CAGA)n Simple_repeat Simple_repeat 4 41 0 9 1111 337 272 25 0 chr3 68946347 68946428 -90653355 + B1_Mur4 SINE Alu 14 96 -54 9 1111 346 219 179 26 chr3 68946494 68946611 -90653172 + Lx8 LINE L1 7013 7147 -326 9 1111 29 47 0 0 chr3 68946938 68946981 -90652802 + AT_rich Low_complexity Low_complexity 1 43 0 9 1111 534 250 84 101 chr3 68946987 68947165 -90652618 + B3 SINE B2 9 183 -12 9 1111 22 35 0 0 chr3 68947236 68947265 -90652518 + AT_rich Low_complexity Low_complexity 1 29 0 9 1111 4038 269 83 56 chr3 68947663 68947836 -90651947 - L1Md_A LINE L1 -1 7459 7281 9 1111 207 0 0 0 chr3 68947836 68947859 -90651924 + (TA)n Simple_repeat Simple_repeat 1 23 0 9 1111 12833 69 18 11 chr3 68947859 68950668 -90649115 - L1Md_A LINE L1 -180 7280 4427 9 1111 3610 196 88 29 chr3 68950662 68951102 -90648681 - Lx6 LINE L1 -850 6610 6135 9 1111 432 37 0 0 chr3 68951102 68951156 -90648627 + (CA)n Simple_repeat Simple_repeat 2 55 0 9 1111 3610 197 87 31 chr3 68951156 68951569 -90648214 - Lx6 LINE L1 -1326 6134 5721 9 1111 514 189 241 115 chr3 68951569 68951760 -90648023 - B3 SINE B2 0 216 2 9 1111 991 238 64 100 chr3 68951760 68951813 -90647970 - Lx6 LINE L1 -1322 5736 5685 9 1111 3309 157 23 52 chr3 68951798 68952455 -90647328 - L1_Mur3 LINE L1 -430 5450 4813 9 1111 924 114 38 108 chr3 68952458 68952512 -90647271 - ORR1B1 LTR MaLR 0 394 347 9 1111 4826 30 16 2 chr3 68952512 68953074 -90646709 - L1Md_F2 LINE L1 0 6582 6013 9 1111 924 114 38 108 chr3 68953074 68953205 -90646578 - ORR1B1 LTR MaLR -48 346 222 9 1111 411 141 0 0 chr3 68953203 68953267 -90646516 - PB1D9 SINE Alu -56 64 1 9 1111 2241 256 134 36 chr3 68953274 68954227 -90645556 - L1_Mur3 LINE L1 -6528 1200 154 9 1111 749 170 244 28 chr3 68954284 68954460 -90645323 - B3 SINE B2 -2 214 1 9 1111 187 305 90 73 chr3 68955326 68955503 -90644280 + L2 LINE L2 2712 2891 -528 9 1111 528 193 25 8 chr3 68955508 68955628 -90644155 + B1_Mur1 SINE Alu 2 123 -26 9 1111 501 17 0 0 chr3 68955628 68955686 -90644097 + (TC)n Simple_repeat Simple_repeat 1 58 0 9 1111 441 0 0 0 chr3 68955686 68955734 -90644049 + (CA)n Simple_repeat Simple_repeat 1 49 0 9 1111 510 61 0 0 chr3 68956055 68956121 -90643662 + (TA)n Simple_repeat Simple_repeat 1 66 0 9 1111 624 237 0 7 chr3 68956179 68956319 -90643464 - B3A SINE B2 -57 141 3 9 1111 363 293 167 58 chr3 68956589 68956846 -90642937 + B4A SINE B4 2 286 -6 9 1111 340 174 79 89 chr3 68956930 68957031 -90642752 + HAL1-3A_ME LINE L1 1976 2075 -783 9 1111 649 162 0 0 chr3 68957037 68957142 -90642641 + B1_Mus1 SINE Alu 1 105 -43 9 1111 566 18 17 67 chr3 68957172 68957292 -90642491 + (TTCTC)n Simple_repeat Simple_repeat 3 116 0 9 1111 582 205 0 39 chr3 68957297 68957534 -90642249 + C-rich Low_complexity Low_complexity 1 227 0 9 1111 633 90 0 0 chr3 68957535 68957624 -90642159 + (TTCTC)n Simple_repeat Simple_repeat 4 92 0 9 1111 302 229 8 0 chr3 68957835 68957957 -90641826 + GA-rich Low_complexity Low_complexity 1 123 0 9 1111 761 140 0 53 chr3 68957977 68958166 -90641617 + GA-rich Low_complexity Low_complexity 1 179 0 9 1111 373 143 0 25 chr3 68958180 68958259 -90641524 + GA-rich Low_complexity Low_complexity 5 81 0 9 1111 584 178 9 0 chr3 68958262 68958369 -90641414 + B1_Mur1 SINE Alu 42 149 0 9 1111 258 32 0 0 chr3 68958535 68958566 -90641217 + (TGAA)n Simple_repeat Simple_repeat 3 33 0 9 1111 252 183 146 31 chr3 68958873 68958969 -90640814 - B1_Mur2 SINE Alu -26 123 17 9 1111 375 73 0 0 chr3 68958974 68959029 -90640754 + (TATG)n Simple_repeat Simple_repeat 2 56 0 9 1111 266 350 0 12 chr3 68959035 68959116 -90640667 - MER33 DNA MER1_type -239 85 6 9 1111 216 0 0 0 chr3 68959209 68959233 -90640550 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 9 1111 768 22 0 0 chr3 68959234 68959324 -90640459 + (TC)n Simple_repeat Simple_repeat 1 90 0 9 1111 311 247 101 0 chr3 68959355 68959444 -90640339 - B3A SINE B2 -100 98 1 9 1111 772 232 28 44 chr3 68959481 68959661 -90640122 + B3A SINE B2 4 180 -18 9 1111 222 118 0 0 chr3 68959697 68959731 -90640052 + (CAT)n Simple_repeat Simple_repeat 1 34 0 9 1111 681 230 0 0 chr3 68959735 68959874 -90639909 - B1_Mur3 SINE Alu -6 143 5 9 1111 297 306 46 9 chr3 68959925 68960034 -90639749 + B1F2 SINE Alu 1 113 -36 9 1111 292 272 30 181 chr3 68960034 68960089 -90639694 + B4A SINE B4 86 224 -68 9 1111 189 0 0 0 chr3 68960089 68960110 -90639673 + (A)n Simple_repeat Simple_repeat 1 21 0 9 1111 749 280 82 12 chr3 68960747 68961004 -90638779 - RMER1B Other Other -721 345 71 9 1111 532 316 0 0 chr3 68961198 68961334 -90638449 - ID_B1 SINE B4 -8 216 81 9 1111 316 234 57 15 chr3 68961367 68961475 -90638308 - B1_Mur1 SINE Alu -8 141 1 9 1111 588 183 43 17 chr3 68961631 68961748 -90638035 - MTD LTR MaLR 0 419 300 9 1111 581 235 38 0 chr3 68961794 68961926 -90637857 - MTD LTR MaLR -281 138 2 9 1111 336 292 37 9 chr3 68962068 68962175 -90637608 - MIRb SINE MIR -150 118 9 9 1111 183 80 0 0 chr3 68962302 68962327 -90637456 + (TTA)n Simple_repeat Simple_repeat 2 26 0 9 1111 579 178 37 0 chr3 68962327 68962434 -90637349 - B1_Mur1 SINE Alu -9 140 30 9 1111 385 252 39 10 chr3 68962519 68962623 -90637160 + MLT1A0 LTR MaLR 32 138 -227 9 1111 369 133 0 0 chr3 68962623 68962698 -90637085 + (TC)n Simple_repeat Simple_repeat 2 76 0 9 1111 323 234 0 0 chr3 68962701 68962778 -90637005 - PB1D9 SINE Alu -8 112 36 9 1111 2967 42 15 2 chr3 68962868 68963272 -90636511 - BGLII LTR ERVK -12 409 1 9 1111 5049 211 17 21 chr3 68963995 68965046 -90634737 + Lx5 LINE L1 5993 7039 -11 9 1111 515 298 51 23 chr3 68965111 68965286 -90634497 - B3A SINE B2 -16 182 3 9 1111 387 222 0 0 chr3 68965308 68965380 -90634403 + RSINE1 SINE B4 84 155 -10 9 1111 252 271 0 33 chr3 68965440 68965501 -90634282 + B1_Mus1 SINE Alu 7 65 -83 9 1111 243 0 0 0 chr3 68965501 68965528 -90634255 + (TC)n Simple_repeat Simple_repeat 1 27 0 9 1111 815 29 0 10 chr3 68965529 68965632 -90634151 + (TTCCC)n Simple_repeat Simple_repeat 2 103 0 9 1111 522 0 0 0 chr3 68965632 68965690 -90634093 + (TTCC)n Simple_repeat Simple_repeat 3 60 0 9 1111 356 227 0 43 chr3 68965710 68965802 -90633981 + B1_Mur2 SINE Alu 62 149 0 9 1111 293 24 49 0 chr3 68966391 68966432 -90633351 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 9 1111 655 138 35 0 chr3 68966452 68966568 -90633215 - B1_Mur1 SINE Alu 0 149 30 9 1111 390 304 20 33 chr3 68966736 68966889 -90632894 + RSINE1 SINE B4 3 153 -12 9 1111 384 329 7 0 chr3 68967096 68967239 -90632544 + ERVL-int LTR ERVL 5215 5358 -399 9 1111 453 138 0 0 chr3 68967529 68967623 -90632160 + (TC)n Simple_repeat Simple_repeat 2 95 0 9 1111 1174 225 135 7 chr3 68967627 68967931 -90631852 + MTD LTR MaLR 23 365 -54 9 1111 414 0 0 0 chr3 68968607 68968653 -90631130 + (TG)n Simple_repeat Simple_repeat 1 46 0 9 1111 1347 159 215 14 chr3 68968653 68968997 -90630786 + MTD LTR MaLR 5 417 -2 9 1111 680 209 236 29 chr3 68969022 68969263 -90630520 - B4A SINE B4 0 292 2 9 1111 315 250 53 21 chr3 68969281 68969375 -90630408 - PB1D10 SINE Alu -20 97 1 9 1111 1324 194 50 21 chr3 68969512 68969791 -90629992 + MTC LTR MaLR 4 290 -131 9 1111 1590 220 46 97 chr3 68969793 68970317 -90629466 - RLTR18B LTR ERVK -5 507 11 9 1111 578 239 0 0 chr3 68970328 68970462 -90629321 + MTC LTR MaLR 283 416 -5 9 1111 473 340 18 58 chr3 68970614 68970889 -90628894 - L1M5 LINE L1 -424 5749 5486 9 1111 360 333 43 19 chr3 68971014 68971176 -90628607 - MIR SINE MIR 0 262 97 9 1111 1836 147 51 9 chr3 68971229 68971545 -90628238 - ORR1A4 LTR MaLR 0 329 1 9 1111 986 110 6 24 chr3 68971545 68971713 -90628070 - ORR1A4-int LTR MaLR 0 1963 1799 9 1111 475 222 20 0 chr3 68971737 68971836 -90627947 + B1_Mur2 SINE Alu 1 101 -48 9 1111 274 175 0 127 chr3 68971775 68971893 -90627890 - RMER17A LTR ERVK -287 464 362 9 1111 319 310 68 8 chr3 68971836 68971851 -90627932 + B4A SINE B4 86 206 -86 9 1111 309 319 8 114 chr3 68971905 68972036 -90627747 + RSINE1 SINE B4 49 165 0 9 1111 657 134 0 0 chr3 68972598 68972710 -90627073 + (GA)n Simple_repeat Simple_repeat 1 112 0 9 1111 226 321 48 88 chr3 68972878 68973025 -90626758 + MLT1J1 LTR MaLR 157 297 -147 9 1111 268 376 14 57 chr3 68973266 68973407 -90626376 - RSINE1 SINE B4 -20 145 11 9 1111 2242 164 64 10 chr3 68973728 68974117 -90625666 + RMER1B Other Other 643 1052 -14 9 1111 706 229 127 0 chr3 68974533 68974699 -90625084 + ID_B1 SINE B4 3 189 -35 9 1111 246 32 0 0 chr3 68975505 68975536 -90624247 + (CAGAGA)n Simple_repeat Simple_repeat 6 36 0 9 1111 484 276 129 5 chr3 68975602 68975795 -90623988 - B4A SINE B4 -73 219 3 9 1111 240 197 12 95 chr3 68975720 68975804 -90623979 - B3A SINE B2 -121 77 1 1 1111 310 155 56 14 chr3 68975823 68975895 -90623888 - PB1D10 SINE Alu 0 117 43 1 1111 514 237 59 7 chr3 68976029 68976165 -90623618 - B3A SINE B2 -55 143 1 1 1111 946 178 81 35 chr3 68977020 68977218 -90622565 + B3 SINE B2 1 207 -9 1 1111 232 319 25 25 chr3 68977614 68977733 -90622050 + PB1D7 SINE Alu 1 119 -1 1 1111 315 345 38 33 chr3 68977936 68978119 -90621664 + L1MA4A LINE L1 5492 5675 -628 1 1111 630 71 0 0 chr3 68978164 68978248 -90621535 + (CA)n Simple_repeat Simple_repeat 2 85 0 1 1111 24 32 0 0 chr3 68978290 68978321 -90621462 + AT_rich Low_complexity Low_complexity 1 31 0 1 1111 361 171 507 54 chr3 68978322 68978470 -90621313 + B3 SINE B2 1 215 -1 1 1111 1100 205 14 14 chr3 68978483 68978696 -90621087 - B3 SINE B2 -2 214 2 1 1111 279 250 0 24 chr3 68978706 68978788 -90620995 + L1MA4A LINE L1 5812 5891 -412 1 1111 25 0 0 0 chr3 68979554 68979579 -90620204 + AT_rich Low_complexity Low_complexity 1 25 0 1 1111 548 281 68 0 chr3 68979584 68979730 -90620053 + RSINE1 SINE B4 3 158 -7 1 1111 226 299 35 0 chr3 68979778 68979865 -90619918 - MER5A DNA MER1_type -29 160 71 1 1111 396 155 0 0 chr3 68980136 68980207 -90619576 + (TG)n Simple_repeat Simple_repeat 2 72 0 1 1111 542 233 112 35 chr3 68980208 68980377 -90619406 - B3A SINE B2 -16 182 1 1 1111 297 262 19 9 chr3 68980993 68981101 -90618682 - RSINE1 SINE B4 -12 153 45 1 1111 219 125 0 0 chr3 68981900 68981940 -90617843 + (TG)n Simple_repeat Simple_repeat 1 40 0 1 1111 406 242 37 15 chr3 68981940 68982068 -90617715 + (CATG)n Simple_repeat Simple_repeat 3 133 0 1 1111 286 280 149 0 chr3 68982412 68982580 -90617203 - L2a LINE L2 -1 3425 3233 1 1111 395 344 128 50 chr3 68982580 68983058 -90616725 - MLT2B2 LTR ERVL 0 515 1 1 1111 1743 122 11 106 chr3 68983354 68983712 -90616071 + ORR1A4 LTR MaLR 1 324 -5 1 1111 1086 261 106 0 chr3 68983752 68984016 -90615767 - B4A SINE B4 0 292 1 1 1111 931 215 33 23 chr3 68984069 68984283 -90615500 - B3 SINE B2 0 216 1 1 1111 1478 210 70 9 chr3 68984354 68984695 -90615088 - MTD LTR MaLR -56 363 2 1 1111 462 234 28 0 chr3 68984790 68984897 -90614886 - B3 SINE B2 -90 126 17 1 1111 750 260 114 25 chr3 68984898 68985178 -90614605 - L1MB7 LINE L1 -332 5852 5548 1 1111 1285 245 94 16 chr3 68985316 68985689 -90614094 + MTD LTR MaLR 8 409 -10 1 1111 232 324 70 57 chr3 68985689 68985846 -90613937 - L1MB7 LINE L1 -751 5423 5265 1 1111 24 77 0 0 chr3 68985870 68985922 -90613861 + AT_rich Low_complexity Low_complexity 1 52 0 1 1111 622 224 7 15 chr3 68985922 68986058 -90613725 - B1_Mur2 SINE Alu -13 136 2 1 1111 261 183 0 77 chr3 68986233 68986298 -90613485 - B1F SINE Alu -85 64 5 1 1111 189 262 100 27 chr3 68986303 68986413 -90613370 - L2a LINE L2 -592 2827 2710 1 1111 929 89 7 0 chr3 68986743 68986889 -90612894 + (TTAGGG)n Simple_repeat Simple_repeat 6 152 0 1 1111 228 170 21 0 chr3 68987539 68987586 -90612197 + A-rich Low_complexity Low_complexity 3 50 0 1 1111 411 336 7 7 chr3 68987856 68987994 -90611789 + RSINE1 SINE B4 28 165 0 1 1111 577 254 112 20 chr3 68988302 68988499 -90611284 + B3 SINE B2 2 216 0 1 1111 483 179 58 33 chr3 68988716 68988837 -90610946 + Lx7 LINE L1 5255 5378 -502 1 1111 403 309 153 17 chr3 68988895 68989182 -90610601 + Lx7 LINE L1 5975 6300 -1396 1 1111 288 261 0 0 chr3 68991124 68991216 -90608567 + (CACCAT)n Simple_repeat Simple_repeat 5 96 0 1 1111 498 286 0 0 chr3 68991217 68991343 -90608440 - ID_B1 SINE B4 -17 207 82 1 1111 210 314 18 64 chr3 68991354 68991463 -90608320 - L2 LINE L2 -781 2638 2535 1 1111 208 274 0 0 chr3 68992713 68992764 -90607019 + T-rich Low_complexity Low_complexity 1 51 0 1 1111 697 203 66 33 chr3 68993575 68993758 -90606025 + B3 SINE B2 8 196 -20 1 1111 916 109 0 0 chr3 68993909 68994046 -90605737 - B1_Mus1 SINE Alu 0 148 12 1 1111 742 304 71 33 chr3 68994200 68994514 -90605269 + ORR1E LTR MaLR 6 345 -14 1 1111 394 284 142 137 chr3 68995801 68996173 -90603610 - MTE2a LTR MaLR 0 379 6 1 1111 607 308 189 0 chr3 68996300 68996527 -90603256 - MTEa LTR MaLR -47 332 63 1 1111 322 362 24 0 chr3 68997394 68997521 -90602262 - MIRb SINE MIR -122 146 17 1 1111 186 133 0 0 chr3 68999146 68999176 -90600607 + (TTTG)n Simple_repeat Simple_repeat 3 32 0 1 1111 235 303 34 0 chr3 68999177 68999266 -90600517 - B1F SINE Alu -55 94 3 1 1111 474 175 20 10 chr3 68999300 68999398 -90600385 + B3A SINE B2 20 118 -80 1 1111 547 14 28 0 chr3 68999418 68999490 -90600293 + (CA)n Simple_repeat Simple_repeat 1 74 0 1 1111 1254 57 0 6 chr3 68999518 68999693 -90600090 + B2_Mm2 SINE B2 2 175 -20 1 1111 580 231 75 75 chr3 68999744 68999997 -90599786 + MLT1E1A LTR MaLR 101 353 -327 1 1111 338 264 184 63 chr3 69000003 69000177 -90599606 + MLT1E LTR MaLR 383 577 -76 1 1111 940 117 233 6 chr3 69000348 69000528 -90599255 + URR1B DNA MER1_type 5 225 0 2 1111 306 107 0 0 chr3 69000638 69000694 -90599089 + (TC)n Simple_repeat Simple_repeat 2 57 0 3 1111 312 91 0 0 chr3 69000729 69000773 -90599010 + (TTCA)n Simple_repeat Simple_repeat 1 44 0 4 1111 1117 219 5 9 chr3 69000773 69000990 -90598793 - B3 SINE B2 0 216 1 5 1111 3419 43 0 0 chr3 69001128 69001524 -90598259 + MTA_Mm LTR MaLR 1 396 0 6 1111 2477 22 0 0 chr3 69001524 69001837 -90597946 + MTA_Mm-int LTR MaLR 1 313 -785 6 1111 403 299 73 0 chr3 69001904 69002041 -90597742 - MLT1B LTR MaLR 0 390 244 7 1111 537 309 0 18 chr3 69002066 69002234 -90597549 + MTEa LTR MaLR 1 165 -214 8 1111 297 178 50 25 chr3 69002589 69002711 -90597072 + (TCTCTG)n Simple_repeat Simple_repeat 1 126 0 9 1111 351 0 0 0 chr3 69002711 69002750 -90597033 + (TATG)n Simple_repeat Simple_repeat 4 42 0 1 1111 372 148 48 24 chr3 69002750 69002916 -90596867 + (TCTG)n Simple_repeat Simple_repeat 4 173 0 1 1111 380 297 80 20 chr3 69003299 69003450 -90596333 - MTD LTR MaLR -158 261 102 1 1111 655 211 0 15 chr3 69003469 69003599 -90596184 - B3 SINE B2 -87 129 2 1 1111 27 81 0 0 chr3 69004140 69004202 -90595581 + AT_rich Low_complexity Low_complexity 1 62 0 1 1111 485 242 23 38 chr3 69004503 69004636 -90595147 - RSINE1 SINE B4 -31 134 4 1 1111 349 211 64 0 chr3 69004701 69004788 -90594995 - B1_Mus2 SINE Alu 0 149 43 1 1111 4639 109 26 4 chr3 69004803 69005537 -90594246 + ORR1A2-int LTR MaLR 1214 1963 0 1 1111 2323 112 16 0 chr3 69005537 69005858 -90593925 + ORR1A2 LTR MaLR 1 326 -1 1 1111 317 275 27 81 chr3 69005953 69006064 -90593719 - RMER12 LTR ERVK -471 851 747 1 1111 1072 263 10 28 chr3 69006189 69006478 -90593305 - MTD LTR MaLR -135 284 1 1 1111 349 187 167 9 chr3 69006556 69006664 -90593119 + B1_Mus1 SINE Alu 18 142 -6 2 1111 186 43 0 0 chr3 69006666 69006689 -90593094 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2 1111 803 258 55 72 chr3 69006871 69007218 -90592565 + ORR1E LTR MaLR 19 359 0 2 1111 654 248 7 0 chr3 69007340 69007477 -90592306 - B1_Mur3 SINE Alu -10 139 2 2 1111 348 375 66 41 chr3 69007585 69007977 -90591806 - MLT1I LTR MaLR -3 408 7 2 1111 390 286 167 13 chr3 69008050 69008206 -90591577 - B3A SINE B2 -16 182 3 2 1111 681 316 16 0 chr3 69008370 69008560 -90591223 + ID_B1 SINE B4 10 202 -22 2 1111 676 266 63 68 chr3 69008563 69008723 -90591060 + B3A SINE B2 7 163 -32 2 1111 216 0 0 0 chr3 69008723 69008747 -90591036 + (CA)n Simple_repeat Simple_repeat 2 25 0 2 1111 403 266 63 68 chr3 69008747 69008776 -90591007 + B2_Mm2 SINE B2 164 194 -1 2 1111 309 213 126 153 chr3 69010518 69010740 -90589043 + B3 SINE B2 1 216 0 2 1111 370 284 92 0 chr3 69011558 69011667 -90588116 + ID_B1 SINE B4 105 223 -1 3 1111 620 152 74 1 chr3 69011830 69011953 -90587830 + B1_Mur4 SINE Alu 3 134 -16 3 1111 805 135 0 8 chr3 69012086 69012220 -90587563 + B1_Mur4 SINE Alu 11 143 -7 3 1111 186 402 36 0 chr3 69012532 69012644 -90587139 - MIRm SINE MIR -146 130 15 3 1111 595 236 22 39 chr3 69012728 69012909 -90586874 - B3A SINE B2 -20 178 1 3 1111 373 331 29 0 chr3 69013557 69013795 -90585988 + (CA)n Simple_repeat Simple_repeat 1 244 0 3 1111 382 331 29 0 chr3 69013854 69014026 -90585757 + (CA)n Simple_repeat Simple_repeat 2 178 0 3 1111 424 312 17 11 chr3 69014118 69014296 -90585487 + (CA)n Simple_repeat Simple_repeat 2 180 0 3 1111 265 235 56 84 chr3 69014424 69014531 -90585252 - PB1D10 SINE Alu -1 116 13 3 1111 213 39 0 0 chr3 69014728 69014754 -90585029 + (TTG)n Simple_repeat Simple_repeat 2 27 0 3 1111 496 175 145 38 chr3 69014754 69014784 -90584999 - B1_Mus1 SINE Alu -9 139 110 3 1111 3019 50 55 0 chr3 69014784 69015163 -90584620 - MTB LTR MaLR 0 400 1 4 1111 496 175 145 38 chr3 69015163 69015254 -90584529 - B1_Mus1 SINE Alu -39 109 1 3 1111 4085 174 111 38 chr3 69015757 69016655 -90583128 + Lx3B LINE L1 6003 6966 -7 4 1111 485 218 144 88 chr3 69016704 69016760 -90583023 - B3A SINE B2 -7 191 149 4 1111 4887 45 5 2 chr3 69016760 69017345 -90582438 + LTRIS_Mus LTR ERV1 1 587 0 4 1111 485 218 144 88 chr3 69017345 69017469 -90582314 - B3A SINE B2 -50 148 1 4 1111 573 161 83 17 chr3 69018149 69018269 -90581514 - B1_Mus2 SINE Alu -12 135 8 4 1111 565 216 34 67 chr3 69018291 69018470 -90581313 - B3A SINE B2 -22 176 4 4 1111 2712 182 149 35 chr3 69018480 69019111 -90580672 - RMER1B Other Other -3 1063 361 4 1111 341 204 143 19 chr3 69019118 69019223 -90580560 - RMER1B Other Other -675 391 274 4 1111 1417 148 62 0 chr3 69019228 69019471 -90580312 + Lx4B LINE L1 6153 6410 -648 4 1111 444 37 0 0 chr3 69019545 69019599 -90580184 + (GA)n Simple_repeat Simple_repeat 1 54 0 4 1111 244 319 165 16 chr3 69019856 69019977 -90579806 - RSINE1 SINE B4 -25 140 2 4 1111 772 154 117 28 chr3 69020331 69020511 -90579272 + RMER6C LTR ERVK 1 196 -494 5 1111 1189 62 0 0 chr3 69020512 69020657 -90579126 + B1_Mus1 SINE Alu 3 147 -1 5 1111 218 105 26 0 chr3 69020675 69020713 -90579070 + (GGA)n Simple_repeat Simple_repeat 3 41 0 5 1111 1151 30 0 0 chr3 69020714 69020846 -90578937 + L1Md_T LINE L1 5455 5586 -297 5 1111 8663 30 0 0 chr3 69020846 69021841 -90577942 + L1Md_T LINE L1 5587 6581 -1 5 1111 455 87 0 14 chr3 69021863 69021933 -90577850 + (GGA)n Simple_repeat Simple_repeat 3 71 0 5 1111 1315 160 266 3 chr3 69021933 69022302 -90577481 + RMER6C LTR ERVK 183 648 -42 5 1111 672 279 110 9 chr3 69022810 69023038 -90576745 - B4A SINE B4 -41 251 1 5 1111 273 220 0 0 chr3 69023151 69023201 -90576582 - B1_Mur3 SINE Alu -51 98 49 5 1111 21 0 0 0 chr3 69023215 69023236 -90576547 + AT_rich Low_complexity Low_complexity 1 21 0 5 1111 21 0 0 0 chr3 69023810 69023831 -90575952 + AT_rich Low_complexity Low_complexity 1 21 0 5 1111 673 262 36 57 chr3 69023845 69024039 -90575744 - B3A SINE B2 -4 194 5 5 1111 397 273 48 41 chr3 69024292 69024437 -90575346 - RSINE1 SINE B4 -16 149 4 6 1111 3266 157 118 12 chr3 69024495 69024798 -90574985 - RMER6D LTR ERVK 0 720 385 6 1111 333 0 0 0 chr3 69024798 69024835 -90574948 + (CA)n Simple_repeat Simple_repeat 1 37 0 6 1111 3266 157 118 12 chr3 69024835 69025182 -90574601 - RMER6D LTR ERVK -336 384 2 6 1111 244 233 0 72 chr3 69025341 69025438 -90574345 - RLTR25A LTR ERVK -492 611 522 6 1111 783 158 16 0 chr3 69025354 69025481 -90574302 - B1_Mur3 SINE Alu -20 129 1 6 1111 24 0 0 0 chr3 69027511 69027535 -90572248 + AT_rich Low_complexity Low_complexity 1 24 0 6 1111 534 276 83 39 chr3 69028218 69028399 -90571384 + B3 SINE B2 1 189 -27 6 1111 252 0 0 0 chr3 69028694 69028722 -90571061 + (CA)n Simple_repeat Simple_repeat 1 28 0 6 1111 413 275 50 0 chr3 69028762 69028882 -90570901 - RSINE1 SINE B4 -36 129 4 6 1111 587 139 0 39 chr3 69028899 69029026 -90570757 - Lx9 LINE L1 0 7644 7523 6 1111 213 306 0 27 chr3 69029153 69029227 -90570556 + ID4_ SINE ID 3 74 -9 7 1111 222 252 7 43 chr3 69029880 69030021 -90569762 + (CATATA)n Simple_repeat Simple_repeat 6 141 0 7 1111 298 258 0 0 chr3 69030210 69030272 -90569511 - ID4_ SINE ID -7 76 15 7 1111 544 263 101 59 chr3 69030845 69031132 -90568651 - L1_Rod LINE L1 -6410 762 464 7 1111 537 248 62 0 chr3 69031458 69031587 -90568196 - ID_B1 SINE B4 -7 217 81 7 1111 318 273 0 0 chr3 69031918 69031984 -90567799 + ID4 SINE ID 4 69 -14 7 1111 534 234 78 0 chr3 69032126 69032254 -90567529 + ID_B1 SINE B4 87 224 0 7 1111 221 30 61 0 chr3 69032254 69032287 -90567496 + (GAAAA)n Simple_repeat Simple_repeat 5 39 0 7 1111 3329 18 39 0 chr3 69032562 69032943 -90566840 - MTA_Mm LTR MaLR 0 396 1 7 1111 9275 34 3 2 chr3 69032945 69034039 -90565744 - MTA_Mm-int LTR MaLR -2 1096 2 7 1111 3329 18 39 0 chr3 69034040 69034421 -90565362 - MTA_Mm LTR MaLR 0 396 1 7 1111 482 273 46 13 chr3 69034756 69034920 -90564863 - B3A SINE B2 0 216 47 7 1111 180 111 0 0 chr3 69035060 69035087 -90564696 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 8 1111 315 0 0 0 chr3 69035092 69035127 -90564656 + (TG)n Simple_repeat Simple_repeat 1 35 0 8 1111 808 140 0 35 chr3 69035127 69035268 -90564515 - B1_Mur3 SINE Alu -4 145 10 8 1111 365 274 42 42 chr3 69035169 69035287 -90564496 - B4 SINE B4 -95 197 80 8 1111 4322 77 0 0 chr3 69036030 69036586 -90563197 - L1Md_T LINE L1 0 6582 6027 8 1111 324 0 0 0 chr3 69036698 69036734 -90563049 + (CA)n Simple_repeat Simple_repeat 1 36 0 8 1111 22 35 0 0 chr3 69036814 69036843 -90562940 + AT_rich Low_complexity Low_complexity 1 29 0 8 1111 383 292 61 0 chr3 69037097 69037244 -90562539 - L1MC4a LINE L1 -359 7523 7368 8 1111 2900 41 9 0 chr3 69037336 69037679 -90562104 - ORR1A0 LTR MaLR 0 346 1 8 1111 315 0 0 0 chr3 69037967 69038002 -90561781 + (TG)n Simple_repeat Simple_repeat 1 35 0 8 1111 294 278 11 11 chr3 69038063 69038154 -90561629 + CT-rich Low_complexity Low_complexity 3 93 0 9 1111 1018 162 101 19 chr3 69038159 69038367 -90561416 + URR1B DNA MER1_type 1 225 0 9 1111 342 256 15 133 chr3 69038476 69038611 -90561172 - PB1 SINE Alu -4 123 5 9 1111 186 125 0 0 chr3 69039372 69039395 -90560388 + (TC)n Simple_repeat Simple_repeat 1 23 0 9 1111 270 0 0 0 chr3 69039395 69039425 -90560358 + (CA)n Simple_repeat Simple_repeat 2 31 0 9 1111 186 125 0 0 chr3 69039425 69039433 -90560350 + (TC)n Simple_repeat Simple_repeat 1 8 0 9 1111 180 111 0 0 chr3 69039481 69039508 -90560275 + (T)n Simple_repeat Simple_repeat 1 27 0 9 1111 556 256 60 20 chr3 69040652 69040851 -90558932 + B3 SINE B2 2 208 -8 9 1111 445 282 0 53 chr3 69041665 69041694 -90558089 - RSINE1 SINE B4 -4 161 136 9 1111 276 30 0 0 chr3 69041694 69041727 -90558056 + (TG)n Simple_repeat Simple_repeat 1 33 0 9 1111 445 282 0 53 chr3 69041727 69041828 -90557955 - RSINE1 SINE B4 -30 135 38 9 1111 308 323 7 110 chr3 69041872 69042018 -90557765 - B3A SINE B2 -58 140 10 1 1111 261 224 0 0 chr3 69042060 69042118 -90557665 - B4A SINE B4 -102 190 133 1 1111 305 246 144 59 chr3 69042124 69042298 -90557485 - B4 SINE B4 -132 160 3 1 1111 211 195 0 0 chr3 69042323 69042364 -90557419 - PB1D10 SINE Alu -21 96 56 1 1111 378 0 0 0 chr3 69042719 69042761 -90557022 + (TC)n Simple_repeat Simple_repeat 1 42 0 1 1111 279 0 0 0 chr3 69042761 69042791 -90556992 + (CA)n Simple_repeat Simple_repeat 1 31 0 1 1111 272 314 23 0 chr3 69042948 69043034 -90556749 + L1MC4 LINE L1 5567 5654 -2228 1 1111 549 267 83 77 chr3 69043201 69043526 -90556257 + L1MC4 LINE L1 6723 7049 -993 1 1111 552 186 12 52 chr3 69043861 69044051 -90555732 + RMER6A LTR ERVK 58 202 -488 1 1111 1715 151 49 6 chr3 69044077 69044423 -90555360 + RMER6A LTR ERVK 396 756 0 1 1111 245 276 154 15 chr3 69045515 69045651 -90554132 + MLT1D LTR MaLR 1 155 -472 1 1111 286 278 99 27 chr3 69045685 69045796 -90553987 + RSINE1 SINE B4 9 127 -38 1 1111 269 303 40 0 chr3 69045899 69045998 -90553785 + MLT1D LTR MaLR 277 379 -126 1 1111 1480 198 116 39 chr3 69046334 69046723 -90553060 - MTD LTR MaLR 0 419 1 1 1111 468 242 98 52 chr3 69046841 69047015 -90552768 + B3A SINE B2 1 182 -16 1 1111 362 308 14 76 chr3 69047833 69047977 -90551806 - ID_B1 SINE B4 -8 216 82 1 1111 24 0 0 0 chr3 69048738 69048762 -90551021 + AT_rich Low_complexity Low_complexity 1 24 0 1 1111 297 244 42 0 chr3 69048868 69048987 -90550796 + (TTATA)n Simple_repeat Simple_repeat 4 127 0 1 1111 261 0 0 0 chr3 69049120 69049149 -90550634 + (TC)n Simple_repeat Simple_repeat 2 30 0 1 1111 384 77 0 0 chr3 69049149 69049200 -90550583 + (TA)n Simple_repeat Simple_repeat 1 52 0 1 1111 219 188 0 0 chr3 69049455 69049503 -90550280 + (TATATG)n Simple_repeat Simple_repeat 4 51 0 1 1111 739 211 30 10 chr3 69049682 69049889 -90549894 + B3A SINE B2 4 211 -5 1 1111 216 67 0 0 chr3 69050179 69050209 -90549574 + (TG)n Simple_repeat Simple_repeat 1 30 0 1 1111 1785 205 110 30 chr3 69051094 69051602 -90548181 - RMER15 LTR ERVL 0 575 27 1 1111 1352 82 0 11 chr3 69051761 69051945 -90547838 + B2_Mm2 SINE B2 1 182 -13 1 1111 321 47 0 0 chr3 69051960 69052003 -90547780 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 1111 538 248 8 23 chr3 69052014 69052146 -90547637 - RSINE1 SINE B4 -34 131 2 1 1111 2460 130 27 12 chr3 69052393 69052451 -90547332 + MTC LTR MaLR 4 66 -355 1 1111 3887 48 2 4 chr3 69052451 69052930 -90546853 + L1Md_F2 LINE L1 6105 6582 0 1 1111 2460 130 27 12 chr3 69052930 69053283 -90546500 + MTC LTR MaLR 67 421 0 1 1111 988 86 25 22 chr3 69053999 69054276 -90545507 + (CA)n Simple_repeat Simple_repeat 1 277 0 1 1111 539 299 75 39 chr3 69054350 69054629 -90545154 + B4A SINE B4 1 289 -3 1 1111 344 277 66 47 chr3 69054733 69054839 -90544944 - RSINE1 SINE B4 -55 110 3 1 1111 243 0 0 0 chr3 69054851 69054878 -90544905 + (T)n Simple_repeat Simple_repeat 1 27 0 1 1111 323 78 0 19 chr3 69054914 69054966 -90544817 + (TG)n Simple_repeat Simple_repeat 1 51 0 1 1111 764 213 41 0 chr3 69054994 69055163 -90544620 - B3A SINE B2 -22 176 1 1 1111 21 36 0 0 chr3 69055172 69055200 -90544583 + AT_rich Low_complexity Low_complexity 1 28 0 1 1111 649 202 177 16 chr3 69055206 69055392 -90544391 - B3 SINE B2 0 216 1 1 1111 258 81 0 0 chr3 69055507 69055544 -90544239 + (TG)n Simple_repeat Simple_repeat 2 38 0 1 1111 742 242 136 5 chr3 69056008 69056199 -90543584 + ID_B1 SINE B4 1 216 -8 1 1111 381 162 0 0 chr3 69056199 69056267 -90543516 + (CA)n Simple_repeat Simple_repeat 1 68 0 1 1111 537 287 31 41 chr3 69057823 69058019 -90541764 + B3A SINE B2 2 195 -3 1 1111 611 275 14 21 chr3 69058056 69058201 -90541582 - B3 SINE B2 0 216 73 1 1111 647 144 29 0 chr3 69058346 69058485 -90541298 + CT-rich Low_complexity Low_complexity 2 144 0 1 1111 241 169 34 0 chr3 69059203 69059262 -90540521 + CT-rich Low_complexity Low_complexity 3 63 0 1 1111 287 175 35 0 chr3 69059286 69059343 -90540440 + B1_Mus1 SINE Alu 1 59 -89 1 1111 403 176 22 0 chr3 69059346 69059437 -90540346 + GA-rich Low_complexity Low_complexity 1 93 0 1 1111 238 209 85 68 chr3 69059439 69059557 -90540226 + L1MA5 LINE L1 6179 6298 -2 1 1111 2347 88 62 171 chr3 69059736 69060269 -90539514 - IAPLTR2_Mm LTR ERVK 0 475 1 1 1111 296 302 9 19 chr3 69060493 69060601 -90539182 + B4A SINE B4 127 233 -59 1 1111 276 170 0 0 chr3 69060607 69060660 -90539123 + (CAGA)n Simple_repeat Simple_repeat 2 54 0 1 1111 25 0 0 0 chr3 69061250 69061275 -90538508 + AT_rich Low_complexity Low_complexity 1 25 0 1 1111 331 262 35 18 chr3 69061332 69061503 -90538280 + (TA)n Simple_repeat Simple_repeat 2 175 0 1 1111 357 190 58 23 chr3 69061527 69061699 -90538084 + (TA)n Simple_repeat Simple_repeat 2 179 0 1 1111 480 222 28 9 chr3 69061884 69061993 -90537790 - ID_B1 SINE B4 -8 216 106 1 1111 1239 91 0 0 chr3 69062018 69062193 -90537590 + (TTCC)n Simple_repeat Simple_repeat 4 178 0 1 1111 215 222 22 0 chr3 69062193 69062238 -90537545 + CT-rich Low_complexity Low_complexity 2 47 0 1 1111 237 336 48 9 chr3 69062255 69062360 -90537423 - PB1D10 SINE Alu -7 110 2 1 1111 300 27 0 0 chr3 69062369 69062406 -90537377 + (TG)n Simple_repeat Simple_repeat 1 37 0 1 1111 2202 170 45 41 chr3 69062426 69062624 -90537159 - MTC LTR MaLR 0 421 210 1 1111 789 188 7 14 chr3 69062624 69062770 -90537013 - B1_Mm SINE Alu 0 147 3 1 1111 2202 170 45 41 chr3 69062770 69062989 -90536794 - MTC LTR MaLR -212 209 2 1 1111 706 194 31 0 chr3 69062989 69063118 -90536665 - B1_Mur1 SINE Alu -15 134 2 1 1111 265 225 108 36 chr3 69063308 69063391 -90536392 - PB1D10 SINE Alu -11 106 18 1 1111 409 281 162 15 chr3 69063628 69063906 -90535877 - LTR37B LTR ERV1 -16 452 134 1 1111 494 196 62 0 chr3 69063907 69064019 -90535764 + PB1D9 SINE Alu 2 120 0 1 1111 282 303 52 72 chr3 69064343 69064496 -90535287 - MLT1C LTR MaLR 0 467 241 1 1111 1634 200 134 76 chr3 69064714 69065266 -90534517 + RLTR31A_Mm LTR ERVK 1 584 0 1 1111 2106 86 72 15 chr3 69065306 69065578 -90534205 + MTB_Mm LTR MaLR 1 282 -125 1 1111 450 0 0 0 chr3 69065578 69065628 -90534155 + (TCCTG)n Simple_repeat Simple_repeat 1 50 0 1 1111 2106 86 72 15 chr3 69065628 69065687 -90534096 + MTB_Mm LTR MaLR 283 349 -58 1 1111 4525 116 60 21 chr3 69065701 69066562 -90533221 - RMER17A2 LTR ERVK -11 895 1 1 1111 472 48 0 0 chr3 69066562 69066624 -90533159 + MTB_Mm LTR MaLR 346 407 0 1 1111 396 0 0 0 chr3 69066671 69066715 -90533068 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 1111 478 311 0 0 chr3 69066715 69066837 -90532946 - RSINE1 SINE B4 -41 124 3 1 1111 234 250 0 18 chr3 69066887 69066944 -90532839 + CT-rich Low_complexity Low_complexity 2 57 0 1 1111 1180 214 163 111 chr3 69067461 69067965 -90531818 - MT2A LTR ERVL -2 531 2 1 1111 840 99 76 0 chr3 69068216 69068347 -90531436 + B1_Mus1 SINE Alu 8 148 0 1 1111 228 100 0 0 chr3 69068349 69068389 -90531394 + (CAAAAA)n Simple_repeat Simple_repeat 1 40 0 1 1111 1509 179 90 35 chr3 69068861 69069180 -90530603 - RMER10B LTR ERVL 0 398 56 1 1111 4212 87 39 3 chr3 69069180 69069747 -90530036 - LTRIS_Mus LTR ERV1 0 587 1 1 1111 1509 179 90 35 chr3 69069747 69069804 -90529979 - RMER10B LTR ERVL -343 55 1 1 1111 990 145 21 0 chr3 69069836 69069981 -90529802 + B1_Mus1 SINE Alu 1 148 0 1 1111 351 0 0 0 chr3 69069988 69070027 -90529756 + (TC)n Simple_repeat Simple_repeat 2 40 0 1 1111 387 0 0 0 chr3 69070027 69070069 -90529714 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 1111 392 252 50 10 chr3 69070073 69070173 -90529610 - RSINE1 SINE B4 -31 134 31 1 1111 459 308 84 25 chr3 69070193 69070396 -90529387 - B4 SINE B4 -75 217 3 1 1111 1798 283 144 11 chr3 69070418 69071326 -90528457 + L1M2 LINE L1 3278 4306 -1837 1 1111 225 307 171 0 chr3 69071326 69071414 -90528369 + B1F1 SINE Alu 1 103 -46 1 1111 723 238 0 0 chr3 69071551 69071698 -90528085 + B3A SINE B2 1 147 -51 1 1111 477 34 0 0 chr3 69071698 69071757 -90528026 + (CA)n Simple_repeat Simple_repeat 2 60 0 1 1111 697 265 64 17 chr3 69071804 69072038 -90527745 + L1M2 LINE L1 5331 5575 -725 1 1111 664 248 0 0 chr3 69072187 69072324 -90527459 + B1_Mus2 SINE Alu 1 137 -10 1 1111 241 245 0 0 chr3 69072595 69072644 -90527139 - B3A SINE B2 -16 182 134 1 1111 388 179 56 9 chr3 69072673 69072780 -90527003 - Charlie2a DNA MER1_type -1532 1329 1218 1 1111 428 264 23 23 chr3 69072925 69073057 -90526726 + B1F1 SINE Alu 18 149 0 1 1111 462 264 19 0 chr3 69073099 69073205 -90526578 + PB1D10 SINE Alu 1 108 -9 1 1111 367 167 0 50 chr3 69073205 69073306 -90526477 + CT-rich Low_complexity Low_complexity 2 97 0 1 1111 390 218 48 19 chr3 69073335 69073438 -90526345 + B1_Mur2 SINE Alu 42 147 -2 1 1111 1121 195 14 32 chr3 69073645 69073862 -90525921 + B3 SINE B2 2 214 -2 1 1111 445 242 0 68 chr3 69074173 69074306 -90525477 + B4A SINE B4 168 291 -1 1 1111 260 262 0 16 chr3 69074367 69074429 -90525354 + GA-rich Low_complexity Low_complexity 2 62 0 1 1111 408 158 0 0 chr3 69074444 69074520 -90525263 + GA-rich Low_complexity Low_complexity 1 76 0 1 138 426 121 0 0 chr3 69074900 69074966 -90524817 + (TG)n Simple_repeat Simple_repeat 2 67 0 1 1112 672 150 45 38 chr3 69074977 69075109 -90524674 - B1_Mur1 SINE Alu -12 137 5 1 1112 198 47 93 0 chr3 69075142 69075185 -90524598 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 1 1112 306 0 0 0 chr3 69075706 69075740 -90524043 + (TG)n Simple_repeat Simple_repeat 2 35 0 1 1112 335 312 0 0 chr3 69076294 69076371 -90523412 + RSINE1 SINE B4 2 78 -87 1 1112 493 197 18 2 chr3 69076374 69076782 -90523001 + (CA)n Simple_repeat Simple_repeat 1 414 0 1 1112 211 343 0 0 chr3 69077432 69077499 -90522284 - PB1D10 SINE Alu -17 100 34 1 1112 2476 205 91 34 chr3 69077620 69078205 -90521578 - RMER1C Other Other -1 1341 724 1 1112 387 0 0 0 chr3 69078821 69078864 -90520919 + (TG)n Simple_repeat Simple_repeat 1 43 0 1 1112 742 274 82 26 chr3 69078878 69079148 -90520635 - B4A SINE B4 0 292 8 2 1112 216 0 0 0 chr3 69079189 69079213 -90520570 + (TA)n Simple_repeat Simple_repeat 2 25 0 2 1112 423 0 0 0 chr3 69079213 69079259 -90520524 + (TG)n Simple_repeat Simple_repeat 2 48 0 2 1112 647 278 0 0 chr3 69079434 69079578 -90520205 + B1_Mur1 SINE Alu 1 144 -5 2 1112 820 218 17 6 chr3 69080355 69080535 -90519248 + MTE2a LTR MaLR 197 378 -1 2 1112 772 125 95 7 chr3 69080582 69080719 -90519064 - B1_Mur4 SINE Alu 0 150 2 2 1112 24 0 0 0 chr3 69080760 69080784 -90518999 + AT_rich Low_complexity Low_complexity 1 24 0 2 1112 26 50 0 0 chr3 69080960 69081000 -90518783 + AT_rich Low_complexity Low_complexity 1 40 0 2 1112 24 32 0 0 chr3 69081386 69081417 -90518366 + AT_rich Low_complexity Low_complexity 1 31 0 2 1112 1133 231 60 0 chr3 69081497 69081731 -90518052 - Lx8 LINE L1 -949 6524 6277 2 1112 861 326 20 16 chr3 69081729 69082035 -90517748 + Lx8 LINE L1 6509 6815 -658 2 1112 725 251 9 36 chr3 69082046 69082265 -90517518 - L1_Rod LINE L1 -632 5215 5003 2 1112 969 245 38 5 chr3 69082278 69082487 -90517296 - B3 SINE B2 0 216 1 2 1112 520 182 6 18 chr3 69082514 69082625 -90517158 - B1_Mur2 SINE Alu -11 139 24 2 1112 1158 286 70 20 chr3 69082629 69083075 -90516708 - L1M2 LINE L1 -1071 5072 4605 2 1112 244 143 18 18 chr3 69083161 69083218 -90516565 + (TA)n Simple_repeat Simple_repeat 1 57 0 2 1112 1494 146 94 88 chr3 69083696 69084048 -90515735 + ORR1B1 LTR MaLR 41 394 0 2 1112 438 36 0 0 chr3 69084407 69084463 -90515320 + (TTCC)n Simple_repeat Simple_repeat 3 58 0 2 1112 240 229 212 24 chr3 69084516 69084601 -90515182 - PB1D10 SINE Alu -16 101 1 2 1112 434 295 21 35 chr3 69085236 69085380 -90514403 - RSINE1 SINE B4 -22 143 2 2 1112 600 167 142 0 chr3 69085714 69085834 -90513949 - B1_Mur2 SINE Alu -5 144 8 2 1112 595 240 54 32 chr3 69085859 69086044 -90513739 - B3 SINE B2 -10 206 18 2 1112 781 141 15 3 chr3 69086873 69087017 -90512766 + B1_Mus2 SINE Alu 1 142 -6 2 1112 261 57 0 0 chr3 69087019 69087054 -90512729 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 2 1112 539 301 68 36 chr3 69087525 69087746 -90512037 + MIR SINE MIR 14 241 -21 2 1112 488 305 21 7 chr3 69087877 69088019 -90511764 + RSINE1 SINE B4 3 146 -19 2 1112 578 217 7 0 chr3 69088071 69088092 -90511691 + G-rich Low_complexity Low_complexity 5 25 0 2 1112 997 36 65 6 chr3 69088092 69088260 -90511523 + (GGGAGA)n Simple_repeat Simple_repeat 2 179 0 2 1112 578 217 7 0 chr3 69088260 69088381 -90511402 + G-rich Low_complexity Low_complexity 26 147 0 2 1112 318 304 0 0 chr3 69088394 69088471 -90511312 + PB1D10 SINE Alu 3 79 -38 2 1112 1355 138 179 20 chr3 69088471 69088767 -90511016 - ORR1C2 LTR MaLR 0 384 42 2 1112 385 271 110 40 chr3 69089545 69089718 -90510065 + B3A SINE B2 4 188 -10 2 1112 423 0 0 0 chr3 69089877 69089924 -90509859 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 2 1112 212 167 0 0 chr3 69090031 69090073 -90509710 + A-rich Low_complexity Low_complexity 4 45 0 2 1112 631 180 7 14 chr3 69090074 69090215 -90509568 + GA-rich Low_complexity Low_complexity 3 142 0 2 1112 1020 219 114 23 chr3 69090361 69090623 -90509160 + RMER1C Other Other 10 295 -1047 2 1112 1568 180 82 23 chr3 69090904 69091246 -90508537 + RMER1C Other Other 854 1215 -127 2 1112 230 239 14 0 chr3 69091246 69091317 -90508466 + CT-rich Low_complexity Low_complexity 1 72 0 2 1112 741 148 23 30 chr3 69091317 69091449 -90508334 + RMER1C Other Other 1203 1333 -9 2 1112 7739 65 6 2 chr3 69091451 69092441 -90507342 - Lx3_Mus LINE L1 -133 5753 4760 2 1112 9283 73 25 3 chr3 69092449 69093696 -90506087 + Lx3_Mus LINE L1 5734 7007 -2 2 1112 406 320 109 54 chr3 69094102 69094452 -90505331 - LTR16B2 LTR ERVL -47 415 47 2 1112 555 291 7 0 chr3 69095306 69095447 -90504336 + B1_Mur1 SINE Alu 1 142 -7 2 1112 475 266 120 0 chr3 69095577 69095761 -90504022 + B3 SINE B2 1 206 -10 2 1112 760 189 139 37 chr3 69095765 69095952 -90503831 + B3 SINE B2 1 206 -10 2 1112 501 211 160 23 chr3 69095985 69096116 -90503667 + B1_Mur2 SINE Alu 1 149 0 2 1112 2633 156 43 47 chr3 69096554 69097106 -90502677 + RMER20B LTR ERVK 1 550 -77 2 1112 463 66 26 0 chr3 69097184 69097260 -90502523 + (TG)n Simple_repeat Simple_repeat 2 79 0 2 1112 26 0 0 0 chr3 69098074 69098100 -90501683 + AT_rich Low_complexity Low_complexity 1 26 0 2 1112 317 281 67 0 chr3 69098109 69098198 -90501585 - RSINE1 SINE B4 0 165 71 2 1112 1412 246 50 62 chr3 69098201 69098627 -90501156 - L1MC1 LINE L1 -142 6191 5758 2 1112 1163 200 5 9 chr3 69098627 69098839 -90500944 + B3 SINE B2 1 211 -5 2 1112 1412 246 50 62 chr3 69098839 69098915 -90500868 - L1MC1 LINE L1 -576 5757 5695 2 1112 251 224 104 0 chr3 69098937 69099004 -90500779 - L1MD LINE L1 -722 5520 5447 2 1112 668 229 38 0 chr3 69099930 69100061 -90499722 - B1_Mur2 SINE Alu -12 137 2 2 1112 2700 181 50 10 chr3 69101011 69101533 -90498250 + RMER1B Other Other 406 1066 0 2 1112 473 211 87 31 chr3 69101548 69101675 -90498108 + B1_Mm SINE Alu 7 140 -7 2 1112 5551 86 7 1 chr3 69102182 69102936 -90496847 - L1_Mus3 LINE L1 -2 6636 5879 2 1112 4292 126 19 0 chr3 69102936 69103573 -90496210 + L1_Mus3 LINE L1 5222 5870 -13 2 1112 894 99 132 30 chr3 69103617 69103784 -90495999 - ORR1C2 LTR MaLR -1 383 200 2 1112 2208 259 66 20 chr3 69103783 69104425 -90495358 + ORR1B1-int LTR MaLR 258 931 -439 2 1112 1915 144 32 78 chr3 69104425 69104658 -90495125 - RLTR14 LTR ERV1 0 382 155 2 1112 3180 58 10 0 chr3 69104658 69105054 -90494729 - MTB LTR MaLR 0 400 1 2 1112 1915 144 32 78 chr3 69105054 69105220 -90494563 - RLTR14 LTR ERV1 -228 154 1 2 1112 410 265 8 25 chr3 69105336 69105456 -90494327 - RLTR14-int LTR ERV1 -239 5078 4961 2 1112 757 71 0 51 chr3 69105500 69105618 -90494165 + B1_Mus2 SINE Alu 1 112 -35 2 1112 1770 171 121 36 chr3 69105640 69106003 -90493780 + ORR1B1 LTR MaLR 1 394 0 2 1112 7286 171 68 4 chr3 69106003 69106665 -90493118 + ORR1B1-int LTR MaLR 1 687 -822 2 1112 225 0 0 0 chr3 69106665 69106690 -90493093 + (CAGAGA)n Simple_repeat Simple_repeat 2 26 0 2 1112 7286 171 68 4 chr3 69106690 69107444 -90492339 + ORR1B1-int LTR MaLR 688 1506 -3 2 1112 1687 159 22 5 chr3 69107444 69107766 -90492017 + ORR1B1 LTR MaLR 6 384 -10 2 1112 260 274 0 27 chr3 69108020 69108095 -90491688 - RLTR14-int LTR ERV1 -492 4825 4753 2 1112 793 158 235 31 chr3 69109102 69109298 -90490485 - RLTR14-int LTR ERV1 -1669 3648 3413 2 1112 1949 166 11 17 chr3 69109307 69109662 -90490121 + ORR1B1 LTR MaLR 42 394 0 2 1112 4630 165 69 69 chr3 69109662 69110656 -90489127 - RLTR14-int LTR ERV1 -1901 3416 2423 2 1112 539 191 114 0 chr3 69110716 69110821 -90488962 - RLTR14-int LTR ERV1 -4400 917 801 2 1112 560 241 69 39 chr3 69110928 69111131 -90488652 - RLTR14-int LTR ERV1 -4660 657 449 2 1112 1553 190 93 3 chr3 69111374 69111727 -90488056 - MTC LTR MaLR -36 385 1 2 1112 330 164 136 0 chr3 69111788 69111898 -90487885 + MER63D DNA AcHobo 102 226 -835 2 1112 2488 180 50 2 chr3 69112136 69112636 -90487147 + L1_Mur3 LINE L1 297 820 -6908 2 1112 1832 153 52 42 chr3 69112626 69113009 -90486774 + L1_Mur3 LINE L1 2053 2439 -3441 2 1112 660 280 59 42 chr3 69113018 69113305 -90486478 + B4A SINE B4 1 292 0 2 1112 189 0 0 0 chr3 69113316 69113337 -90486446 + (CA)n Simple_repeat Simple_repeat 1 21 0 2 1112 540 0 0 0 chr3 69113337 69113397 -90486386 + (GA)n Simple_repeat Simple_repeat 2 61 0 2 1112 4330 25 0 0 chr3 69113638 69114120 -90485663 + LTRIS_Mm LTR ERV1 1 482 0 2 1112 311 0 0 25 chr3 69114257 69114297 -90485486 + (TG)n Simple_repeat Simple_repeat 1 39 0 2 1112 572 179 75 0 chr3 69114298 69114404 -90485379 - RSINE1 SINE B4 -41 124 11 2 1112 602 143 16 56 chr3 69114429 69114555 -90485228 + ORR1B2 LTR MaLR 5 125 -242 2 1112 511 177 25 58 chr3 69114559 69114679 -90485104 + B1_Mus1 SINE Alu 2 117 -31 2 1112 1091 186 8 91 chr3 69114648 69114891 -90484892 + ORR1B2 LTR MaLR 119 341 -26 2 1112 351 185 408 0 chr3 69115021 69115151 -90484632 - B3A SINE B2 -15 183 1 2 1112 238 289 84 73 chr3 69115777 69115956 -90483827 + L1M5 LINE L1 5537 5717 -523 2 1112 252 0 0 0 chr3 69115964 69115992 -90483791 + (CAA)n Simple_repeat Simple_repeat 2 29 0 2 1112 552 68 0 0 chr3 69116899 69116972 -90482811 + (TC)n Simple_repeat Simple_repeat 2 74 0 2 1112 1080 92 0 0 chr3 69116972 69117114 -90482669 - B1_Mus1 SINE Alu -5 143 2 2 1112 1086 187 5 9 chr3 69117149 69117360 -90482423 - B3 SINE B2 -6 210 1 2 1112 485 255 127 7 chr3 69117499 69117641 -90482142 - B4A SINE B4 -61 231 73 2 1112 1714 156 61 9 chr3 69117648 69117797 -90481986 + ORR1B2 LTR MaLR 1 151 -216 2 1112 558 0 0 0 chr3 69117797 69117859 -90481924 + (TC)n Simple_repeat Simple_repeat 1 62 0 2 1112 1714 156 61 9 chr3 69117859 69118039 -90481744 + ORR1B2 LTR MaLR 152 345 -22 2 1112 248 254 0 130 chr3 69118050 69118127 -90481656 - B4A SINE B4 -224 68 2 2 1112 388 288 176 0 chr3 69118668 69118793 -90480990 + B1_Mur2 SINE Alu 1 147 -2 2 1112 198 0 0 0 chr3 69120720 69120742 -90479041 + (CGGGG)n Simple_repeat Simple_repeat 4 25 0 2 1112 308 125 0 15 chr3 69120765 69120830 -90478953 + (CCGAG)n Simple_repeat Simple_repeat 2 65 0 2 1112 201 129 0 0 chr3 69121212 69121243 -90478540 + (CCG)n Simple_repeat Simple_repeat 3 33 0 2 1112 191 279 32 32 chr3 69125000 69125063 -90474720 - L2c LINE L2 -49 3338 3276 2 1112 287 253 10 69 chr3 69125223 69125325 -90474458 - PB1D10 SINE Alu -10 107 12 2 1112 195 259 110 12 chr3 69125335 69125417 -90474366 + MIRb SINE MIR 25 114 -154 2 1112 815 207 7 0 chr3 69126196 69126341 -90473442 + B1_Mur2 SINE Alu 2 147 -2 2 1112 359 85 0 33 chr3 69126440 69126472 -90473311 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2 1112 1211 54 0 0 chr3 69126472 69126619 -90473164 - B1_Mus2 SINE Alu 0 147 1 2 1112 359 85 0 33 chr3 69126619 69126647 -90473136 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 2 1112 328 130 106 0 chr3 69127241 69127402 -90472381 + (CATAG)n Simple_repeat Simple_repeat 2 179 0 2 1112 423 0 0 0 chr3 69128185 69128232 -90471551 + (TG)n Simple_repeat Simple_repeat 1 47 0 2 1112 594 320 81 15 chr3 69128267 69128540 -90471243 - B4A SINE B4 0 292 2 2 1112 240 86 0 0 chr3 69129088 69129123 -90470660 + (TTTA)n Simple_repeat Simple_repeat 1 35 0 2 1112 455 173 221 0 chr3 69129183 69129287 -90470496 - B1_Mus1 SINE Alu 0 148 22 2 1112 279 0 0 0 chr3 69129448 69129479 -90470304 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 2 1112 180 0 0 0 chr3 69129828 69129848 -90469935 + (CA)n Simple_repeat Simple_repeat 2 21 0 2 1112 259 347 0 0 chr3 69129860 69129932 -90469851 - ID4_ SINE ID -10 73 2 2 1112 284 368 0 0 chr3 69130054 69130141 -90469642 - PB1 SINE Alu -40 87 1 3 1112 1024 202 59 0 chr3 69130181 69130384 -90469399 - B3 SINE B2 0 216 2 3 1112 372 196 19 56 chr3 69131015 69131123 -90468660 - PB1D10 SINE Alu -1 116 13 3 1112 599 203 79 7 chr3 69131225 69131364 -90468419 - B1_Mur1 SINE Alu 0 149 1 3 1112 33 0 0 0 chr3 69131610 69131643 -90468140 + AT_rich Low_complexity Low_complexity 1 33 0 3 1112 590 237 8 0 chr3 69131994 69132112 -90467671 - RSINE1 SINE B4 -32 133 15 3 1112 373 43 0 0 chr3 69132334 69132381 -90467402 - B2_Mm2 SINE B2 -144 51 5 3 1112 1209 63 0 0 chr3 69132385 69132583 -90467200 - L1Md_T LINE L1 0 6582 6424 3 1112 726 260 17 0 chr3 69132624 69132797 -90466986 + B3 SINE B2 3 178 -38 3 1112 204 158 0 0 chr3 69132958 69132996 -90466787 + (TATG)n Simple_repeat Simple_repeat 2 39 0 3 1112 237 207 0 58 chr3 69133003 69133090 -90466693 + (TA)n Simple_repeat Simple_repeat 2 83 0 3 1112 728 291 82 71 chr3 69133122 69133585 -90466198 - L1MA5 LINE L1 -372 5928 5461 3 1112 591 278 116 37 chr3 69133625 69134003 -90465780 - L1_Rod LINE L1 -598 5249 4842 3 1112 242 29 59 0 chr3 69134058 69134092 -90465691 + ORR1D2 LTR MaLR 322 357 -13 3 1112 197 374 50 6 chr3 69134109 69134268 -90465515 - MIR SINE MIR -44 218 53 3 1112 21 57 0 0 chr3 69135341 69135376 -90464407 + AT_rich Low_complexity Low_complexity 1 35 0 3 1112 1487 182 124 84 chr3 69135376 69135779 -90464004 + MTD LTR MaLR 1 419 0 3 1112 413 214 100 64 chr3 69136492 69136602 -90463181 + PB1D9 SINE Alu 5 118 -2 3 1112 23 0 0 0 chr3 69136875 69136898 -90462885 + AT_rich Low_complexity Low_complexity 1 23 0 3 1112 248 111 22 0 chr3 69138200 69138245 -90461538 + (TATG)n Simple_repeat Simple_repeat 3 48 0 3 1112 775 246 30 30 chr3 69138246 69138447 -90461336 - B3 SINE B2 -14 202 2 3 1112 260 300 79 35 chr3 69138503 69138517 -90461266 + B4 SINE B4 79 197 -95 3 1112 455 172 37 4 chr3 69138517 69138617 -90461166 + B1_Mur4 SINE Alu 5 108 -41 3 1112 400 258 23 70 chr3 69140634 69140763 -90459020 - B1_Mus2 SINE Alu -10 137 15 3 1112 337 328 22 22 chr3 69140807 69140941 -90458842 + B4A SINE B4 4 137 -155 3 1112 203 156 0 0 chr3 69141826 69141858 -90457925 + (TG)n Simple_repeat Simple_repeat 1 32 0 3 1112 564 203 174 11 chr3 69141860 69142044 -90457739 - B4A SINE B4 -75 217 4 3 1112 390 21 0 0 chr3 69142321 69142368 -90457415 + (TATG)n Simple_repeat Simple_repeat 2 48 0 3 1112 275 235 29 14 chr3 69142466 69142535 -90457248 + RSINE1 SINE B4 79 148 -17 3 1112 34 65 0 0 chr3 69143046 69143108 -90456675 + AT_rich Low_complexity Low_complexity 1 62 0 3 1112 395 261 172 58 chr3 69143185 69143442 -90456341 - B4 SINE B4 -6 286 9 3 1112 760 188 182 0 chr3 69143607 69143788 -90455995 + B3 SINE B2 1 214 -2 3 1112 334 332 68 20 chr3 69143979 69144268 -90455515 - L1M5 LINE L1 -2038 5844 5541 3 1112 281 230 38 75 chr3 69144502 69144582 -90455201 + B1F SINE Alu 67 143 -6 3 1112 201 111 56 0 chr3 69144582 69144618 -90455165 + (CAGA)n Simple_repeat Simple_repeat 1 38 0 3 1112 262 260 77 39 chr3 69144754 69144858 -90454925 - PB1D7 SINE Alu -2 125 18 3 1112 753 70 0 0 chr3 69144922 69145022 -90454761 + (TTTTC)n Simple_repeat Simple_repeat 2 101 0 3 1112 1149 157 107 5 chr3 69146016 69146221 -90453562 - URR1A DNA MER1_type 0 226 1 3 1112 271 109 88 59 chr3 69147416 69147484 -90452299 + ID4 SINE ID 13 82 -1 3 1112 372 192 0 71 chr3 69147576 69147660 -90452123 + ID4_ SINE ID 4 81 -2 3 1112 429 109 0 0 chr3 69147698 69147762 -90452021 + (TG)n Simple_repeat Simple_repeat 1 64 0 3 1112 237 120 0 39 chr3 69147991 69148043 -90451740 - Lx2B LINE L1 0 7000 6951 3 1112 895 92 49 2 chr3 69148206 69148654 -90451129 + (TCCA)n Simple_repeat Simple_repeat 1 469 0 3 1112 401 111 33 22 chr3 69148667 69148759 -90451024 + (TCCA)n Simple_repeat Simple_repeat 3 95 0 3 1112 937 69 40 6 chr3 69148786 69148960 -90450823 + (TCCA)n Simple_repeat Simple_repeat 1 180 0 3 1112 615 95 46 34 chr3 69148979 69149154 -90450629 + (TCCA)n Simple_repeat Simple_repeat 3 179 0 3 1112 944 89 45 3 chr3 69149186 69149548 -90450235 + (TCCA)n Simple_repeat Simple_repeat 1 377 0 3 1112 902 107 47 9 chr3 69149565 69150136 -90449647 + (TCCA)n Simple_repeat Simple_repeat 1 592 0 3 1112 388 281 26 17 chr3 69150259 69150375 -90449408 - PB1D7 SINE Alu -1 119 3 3 1112 216 245 136 36 chr3 69150537 69150647 -90449136 - L2a LINE L2 -328 3098 2978 3 1112 21 36 0 0 chr3 69150920 69150948 -90448835 + AT_rich Low_complexity Low_complexity 1 28 0 3 1112 28 0 0 0 chr3 69151076 69151104 -90448679 + AT_rich Low_complexity Low_complexity 1 28 0 3 1112 906 231 33 9 chr3 69151104 69151314 -90448469 - B3 SINE B2 0 216 2 3 1112 256 278 71 10 chr3 69151316 69151414 -90448369 - L1MC3 LINE L1 -13 7772 7669 3 1112 216 211 40 0 chr3 69151775 69151851 -90447932 + (TA)n Simple_repeat Simple_repeat 1 79 0 3 1112 261 214 18 0 chr3 69152816 69152872 -90446911 - ID4 SINE ID -1 82 26 3 1112 189 0 0 0 chr3 69153063 69153084 -90446699 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 3 1112 204 350 171 16 chr3 69154054 69154370 -90445413 + L2a LINE L2 3021 3385 -41 3 1112 225 0 0 0 chr3 69155008 69155033 -90444750 + (TG)n Simple_repeat Simple_repeat 2 26 0 3 1112 469 260 30 38 chr3 69155056 69155188 -90444595 - RSINE1 SINE B4 -33 132 2 3 1112 903 228 40 14 chr3 69155363 69155583 -90444200 + B4 SINE B4 1 226 -66 3 1112 840 219 40 30 chr3 69155583 69155781 -90444002 + B3 SINE B2 2 201 -15 3 1112 297 208 0 0 chr3 69155784 69155856 -90443927 + (CA)n Simple_repeat Simple_repeat 2 73 0 3 1112 338 348 3 1 chr3 69156135 69156255 -90443528 - B3 SINE B2 0 198 76 3 1112 2030 146 63 20 chr3 69156497 69157012 -90442771 + Lx4A LINE L1 5978 6554 -504 3 1112 449 317 83 36 chr3 69157007 69157344 -90442439 - L1M2 LINE L1 -2222 3921 3569 3 1112 294 337 0 0 chr3 69157377 69157475 -90442308 - PB1D10 SINE Alu -9 108 11 3 1112 545 244 233 52 chr3 69157538 69157786 -90441997 - L1M2 LINE L1 -2593 3550 3267 3 1112 531 0 0 0 chr3 69157786 69157845 -90441938 + (TC)n Simple_repeat Simple_repeat 1 59 0 3 1112 545 244 233 52 chr3 69157845 69158176 -90441607 - L1M2 LINE L1 -2877 3266 2868 3 1112 432 329 106 8 chr3 69158163 69158408 -90441375 + L1MA4A LINE L1 5662 5930 -373 3 1112 1374 46 0 0 chr3 69158944 69159187 -90440596 + (TG)n Simple_repeat Simple_repeat 1 243 0 3 1112 414 244 35 118 chr3 69159391 69159535 -90440248 - B1_Mur1 SINE Alu -16 133 2 3 1112 200 274 0 76 chr3 69159687 69159766 -90440017 + MIRb SINE MIR 7 79 -189 3 1112 360 280 13 138 chr3 69159813 69160037 -90439746 - B3A SINE B2 -2 196 1 3 1112 276 330 41 0 chr3 69160114 69160211 -90439572 - PB1D9 SINE Alu -16 104 4 3 1112 25 51 0 0 chr3 69160211 69160250 -90439533 + AT_rich Low_complexity Low_complexity 1 39 0 3 1112 249 278 109 22 chr3 69160732 69160824 -90438959 + PB1D10 SINE Alu 17 116 -1 3 1112 207 100 0 0 chr3 69161447 69161477 -90438306 + (T)n Simple_repeat Simple_repeat 1 30 0 3 1112 216 0 0 0 chr3 69161728 69161752 -90438031 + (TTTTTG)n Simple_repeat Simple_repeat 2 25 0 3 1112 524 256 36 29 chr3 69163378 69163515 -90436268 - ID_B1 SINE B4 -5 219 82 3 1112 1091 228 167 13 chr3 69163546 69163905 -90435878 + MTD LTR MaLR 6 402 -17 3 1112 582 268 20 26 chr3 69164595 69164748 -90435035 - RSINE1 SINE B4 -11 154 3 3 1112 331 162 25 0 chr3 69164756 69164836 -90434947 + CT-rich Low_complexity Low_complexity 1 82 0 3 1112 271 296 311 11 chr3 69164838 69165008 -90434775 - ID_B1 SINE B4 -3 221 1 3 1112 366 23 0 0 chr3 69165954 69165997 -90433786 + (TA)n Simple_repeat Simple_repeat 1 43 0 3 1112 201 94 0 0 chr3 69166039 69166071 -90433712 + (GGGA)n Simple_repeat Simple_repeat 1 32 0 3 1112 253 335 60 24 chr3 69166870 69167038 -90432745 + MIRb SINE MIR 54 227 -41 3 1112 254 229 0 16 chr3 69168325 69168387 -90431396 + MER58C DNA MER1_type 36 96 -119 3 1112 515 292 70 19 chr3 69168747 69168904 -90430879 + ID_B1 SINE B4 2 166 -58 3 1112 225 321 83 0 chr3 69169339 69169423 -90430360 - PB1 SINE Alu -3 124 34 3 1112 387 0 0 0 chr3 69170123 69170166 -90429617 + (TTTA)n Simple_repeat Simple_repeat 1 43 0 3 1112 1095 69 0 53 chr3 69170166 69170335 -90429448 - B2_Mm2 SINE B2 -34 161 2 3 1112 470 220 72 72 chr3 69170365 69170381 -90429402 - RSINE1 SINE B4 -11 154 141 3 1112 392 0 0 20 chr3 69170381 69170430 -90429353 + (GA)n Simple_repeat Simple_repeat 1 48 0 3 1112 470 220 72 72 chr3 69170430 69170565 -90429218 - RSINE1 SINE B4 -25 140 3 3 1112 240 183 11 137 chr3 69170973 69171068 -90428715 + ID4 SINE ID 1 83 0 3 1112 411 38 0 0 chr3 69172990 69173043 -90426740 + (TCTA)n Simple_repeat Simple_repeat 4 56 0 3 1112 378 279 0 9 chr3 69173422 69173527 -90426256 - B3A SINE B2 -3 195 92 3 1112 363 258 21 77 chr3 69174103 69174246 -90425537 - B1F SINE Alu -1 148 14 3 1112 382 280 83 67 chr3 69174304 69174557 -90425226 + MER44A DNA MER2_type 37 293 -46 3 1112 4190 57 2 22 chr3 69174749 69175305 -90424478 - L1Md_F2 LINE L1 0 6582 6038 3 1112 226 364 40 18 chr3 69175309 69175533 -90424250 - L1M5 LINE L1 -482 5758 5530 3 1112 195 323 15 0 chr3 69176339 69176404 -90423379 - MIRb SINE MIR -187 81 16 3 1112 836 191 104 21 chr3 69176765 69176957 -90422826 - B3 SINE B2 -5 211 4 3 1112 413 299 128 20 chr3 69177951 69178200 -90421583 + MLT1A0 LTR MaLR 88 363 -2 3 1112 21 0 0 0 chr3 69178235 69178256 -90421527 + AT_rich Low_complexity Low_complexity 1 21 0 3 1112 714 205 122 35 chr3 69178461 69178658 -90421125 - B3 SINE B2 0 216 3 3 1112 504 257 71 0 chr3 69178662 69178802 -90420981 - B4 SINE B4 -69 223 74 4 1112 22 0 0 0 chr3 69178827 69178849 -90420934 + AT_rich Low_complexity Low_complexity 1 22 0 4 1112 377 282 172 8 chr3 69179349 69179617 -90420166 - L1MA6 LINE L1 -115 6185 5874 4 1112 30 0 0 0 chr3 69179625 69179655 -90420128 + AT_rich Low_complexity Low_complexity 1 30 0 4 1112 22 56 0 0 chr3 69179879 69179915 -90419868 + AT_rich Low_complexity Low_complexity 1 36 0 4 1112 1484 31 5 5 chr3 69180228 69180423 -90419360 - MusHAL1 LINE L1 -626 2086 1892 4 1112 257 214 0 51 chr3 69180423 69180482 -90419301 - B1_Mur4 SINE Alu -94 56 1 4 1112 3017 108 43 94 chr3 69180482 69180765 -90419018 - MusHAL1 LINE L1 -2728 626 395 4 1112 1013 78 43 0 chr3 69180765 69180906 -90418877 - B1_Mm SINE Alu 0 147 1 4 1112 3017 108 43 94 chr3 69180906 69181184 -90418599 - MusHAL1 LINE L1 -2960 394 94 4 1112 558 53 79 0 chr3 69181180 69181256 -90418527 - L1VL2 LINE L1 -5726 609 528 4 1112 468 273 58 11 chr3 69181268 69181457 -90418326 - L1MA6 LINE L1 -847 5296 5099 4 1112 419 0 0 19 chr3 69181660 69181712 -90418071 + (CA)n Simple_repeat Simple_repeat 1 51 0 4 1112 395 137 0 14 chr3 69181845 69181919 -90417864 + (TA)n Simple_repeat Simple_repeat 2 74 0 4 1112 219 270 67 13 chr3 69182745 69182820 -90416963 - B1F SINE Alu -37 112 34 4 1112 1082 64 50 0 chr3 69183268 69183408 -90416375 + B1_Mus2 SINE Alu 1 147 0 4 1112 217 305 36 24 chr3 69183424 69183508 -90416275 - L2a LINE L2 -21 3405 3321 4 1112 281 187 69 40 chr3 69183539 69183712 -90416071 + (TAGA)n Simple_repeat Simple_repeat 3 180 0 4 1112 1366 56 51 0 chr3 69184253 69184431 -90415352 - B2_Mm1t SINE B2 -6 187 1 4 1112 546 29 0 0 chr3 69184733 69184801 -90414982 + (TG)n Simple_repeat Simple_repeat 2 69 0 4 1112 459 0 0 0 chr3 69185293 69185344 -90414439 + (CA)n Simple_repeat Simple_repeat 1 51 0 4 1112 492 271 186 0 chr3 69185875 69186063 -90413720 - ID_B1 SINE B4 0 224 2 4 1112 229 259 0 18 chr3 69186289 69186344 -90413439 + CT-rich Low_complexity Low_complexity 2 55 0 4 1112 17260 168 73 52 chr3 69186743 69187833 -90411950 + L1_Mur3 LINE L1 540 1622 -4258 4 1112 1430 74 26 5 chr3 69187833 69188024 -90411759 + B2_Mm2 SINE B2 1 195 0 4 1112 17260 141 99 65 chr3 69188024 69188174 -90411609 + L1_Mur3 LINE L1 1623 1661 -4219 4 1112 2842 85 25 5 chr3 69188174 69188566 -90411217 + MTB LTR MaLR 1 400 0 4 1112 17260 141 99 65 chr3 69188566 69189371 -90410412 + L1_Mur3 LINE L1 1662 2467 -3413 4 1112 1083 57 0 41 chr3 69189371 69189518 -90410265 + B1_Mus1 SINE Alu 2 142 -6 4 1112 324 0 0 0 chr3 69189518 69189554 -90410229 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 4 1112 17260 141 99 65 chr3 69189554 69190025 -90409758 + L1_Mur3 LINE L1 2468 2992 -2888 4 1112 182 37 0 36 chr3 69190025 69190053 -90409730 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 4 1112 17260 141 99 65 chr3 69190053 69190939 -90408844 + L1_Mur3 LINE L1 2993 3848 -2032 4 1112 387 0 0 0 chr3 69190939 69190982 -90408801 + (CA)n Simple_repeat Simple_repeat 2 44 0 4 1112 17260 141 99 65 chr3 69190982 69192067 -90407716 + L1_Mur3 LINE L1 3849 5164 -716 4 1112 2571 235 36 23 chr3 69192064 69192708 -90407075 + Lx7 LINE L1 5901 6552 -1144 4 1112 496 252 43 0 chr3 69192733 69192848 -90406935 - PB1D9 SINE Alu 0 120 1 4 1112 371 330 66 44 chr3 69192887 69193115 -90406668 + B4A SINE B4 1 233 -59 4 1112 423 294 13 64 chr3 69194905 69195061 -90404722 + B4A SINE B4 1 148 -144 4 1112 775 343 56 86 chr3 69195436 69195934 -90403849 - MLT2B3 LTR ERVL -68 486 4 4 1112 393 325 91 11 chr3 69197088 69197374 -90402409 + ORR1E LTR MaLR 2 310 -49 4 1112 1482 73 0 3 chr3 69197628 69197930 -90401853 + (GGA)n Simple_repeat Simple_repeat 1 301 0 4 1112 1227 261 39 14 chr3 69197964 69198321 -90401462 - MTE2b LTR MaLR -8 371 6 4 1112 523 224 122 101 chr3 69199108 69199297 -90400486 - B3A SINE B2 0 198 6 4 1112 443 281 91 48 chr3 69199591 69199778 -90400005 + B3A SINE B2 1 195 -3 4 1112 262 299 157 9 chr3 69200564 69200672 -90399111 - MLT1J2 LTR MaLR -320 128 5 4 1112 260 208 0 89 chr3 69201116 69201195 -90398588 - L1MD2 LINE L1 -6 6353 6282 4 1112 186 43 0 0 chr3 69201209 69201232 -90398551 + (T)n Simple_repeat Simple_repeat 1 23 0 4 1112 296 136 0 33 chr3 69201510 69201571 -90398212 + C-rich Low_complexity Low_complexity 4 62 0 4 1112 569 197 37 73 chr3 69201760 69201924 -90397859 - B3 SINE B2 0 216 59 4 1112 228 122 0 0 chr3 69202114 69202155 -90397628 + (C)n Simple_repeat Simple_repeat 1 41 0 4 1112 319 271 78 70 chr3 69202847 69203117 -90396666 - L1M4 LINE L1 -844 5302 5031 4 1112 2072 125 94 6 chr3 69203207 69203569 -90396214 - ORR1B1 LTR MaLR 0 394 1 4 1112 350 230 0 2 chr3 69203619 69203704 -90396079 - L1MD LINE L1 -1098 5048 4965 4 1112 342 0 0 0 chr3 69204010 69204048 -90395735 + (TG)n Simple_repeat Simple_repeat 1 38 0 4 1112 212 244 0 0 chr3 69204061 69204102 -90395681 + ID2 SINE ID 34 74 -9 4 1112 541 136 300 0 chr3 69204258 69204368 -90395415 - B1_Mur4 SINE Alu -7 143 1 4 1112 452 255 9 52 chr3 69204767 69204883 -90394900 + RSINE1 SINE B4 55 165 0 4 1112 337 258 34 0 chr3 69205117 69205206 -90394577 - L1MB8 LINE L1 -32 6146 6055 4 1112 408 212 96 0 chr3 69205341 69205456 -90394327 + B1_Mus1 SINE Alu 1 129 -20 4 17 921 203 34 29 chr3 69205946 69206154 -90393629 - B3 SINE B2 -5 211 3 4 1113 214 284 49 12 chr3 69206599 69206681 -90393102 + L2c LINE L2 3263 3347 -40 4 1113 266 300 12 12 chr3 69206811 69206892 -90392891 + CT-rich Low_complexity Low_complexity 4 84 0 4 1113 519 276 97 17 chr3 69207413 69207676 -90392107 + RCHARR1 DNA MER1_type 9 337 -637 4 1113 1141 294 69 38 chr3 69207715 69208192 -90391591 - Lx8 LINE L1 -9 7464 6973 4 1113 201 121 0 0 chr3 69208201 69208234 -90391549 + (CCCCCA)n Simple_repeat Simple_repeat 3 35 0 4 1113 1747 193 49 14 chr3 69208360 69208785 -90390998 + RCHARR1 DNA MER1_type 431 870 -104 4 1113 423 276 136 11 chr3 69209386 69209562 -90390221 - MER21B LTR ERV1 -86 777 580 4 1113 246 275 178 53 chr3 69209591 69209760 -90390023 - MER21B LTR ERV1 -423 440 251 4 1113 421 290 151 87 chr3 69209769 69210113 -90389670 + MTE2a LTR MaLR 9 374 -5 4 1113 717 264 13 56 chr3 69210124 69210357 -90389426 - MER21B LTR ERV1 -618 245 23 4 1113 415 173 3 1 chr3 69210758 69210834 -90388949 + RSINE1 SINE B4 12 88 -204 4 1113 728 173 6 0 chr3 69211043 69211222 -90388561 + (TG)n Simple_repeat Simple_repeat 1 180 0 4 1113 2398 146 60 62 chr3 69211799 69212316 -90387467 + RMER20A LTR ERVK 1 516 0 4 1113 329 304 0 25 chr3 69213360 69213478 -90386305 - MLT1D LTR MaLR 0 505 391 4 1113 477 0 0 0 chr3 69213597 69213650 -90386133 + (TG)n Simple_repeat Simple_repeat 1 53 0 4 1113 23 33 0 0 chr3 69213850 69213880 -90385903 + AT_rich Low_complexity Low_complexity 1 30 0 4 1113 301 19 208 0 chr3 69213963 69214016 -90385767 + BC1_Mm scRNA scRNA 2 65 -87 4 1113 402 21 0 0 chr3 69214017 69214064 -90385719 + (TAAA)n Simple_repeat Simple_repeat 3 49 0 4 1113 340 258 0 16 chr3 69214948 69215074 -90384709 + CT-rich Low_complexity Low_complexity 3 126 0 4 1113 895 293 157 14 chr3 69215505 69215945 -90383838 + Lx8 LINE L1 6808 7310 -163 4 1113 1191 92 0 0 chr3 69216505 69216870 -90382913 + (TG)n Simple_repeat Simple_repeat 1 365 0 4 1113 683 274 50 77 chr3 69216871 69216889 -90382894 - B4 SINE B4 0 292 275 4 1113 1245 83 0 0 chr3 69216889 69217069 -90382714 + (TG)n Simple_repeat Simple_repeat 1 180 0 4 1113 683 274 50 77 chr3 69217069 69217250 -90382533 - B4 SINE B4 -18 274 92 4 1113 189 0 0 0 chr3 69217250 69217271 -90382512 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 4 1113 683 274 50 77 chr3 69217271 69217370 -90382413 - B4 SINE B4 -201 91 2 4 1113 378 0 0 0 chr3 69217575 69217617 -90382166 + (TTTA)n Simple_repeat Simple_repeat 3 44 0 4 1113 256 286 54 0 chr3 69217617 69217716 -90382067 - B1F1 SINE Alu -12 105 5 4 1113 459 253 165 30 chr3 69217742 69217942 -90381841 - MLT1D LTR MaLR -7 498 272 4 1113 558 0 0 0 chr3 69217994 69218056 -90381727 + (TTTTG)n Simple_repeat Simple_repeat 4 65 0 4 1113 217 312 0 0 chr3 69218056 69218120 -90381663 - B1_Mur2 SINE Alu -12 137 74 4 1113 395 226 85 11 chr3 69218100 69218194 -90381589 - B1F SINE Alu -27 122 22 4 1113 255 250 152 62 chr3 69218278 69218423 -90381360 - MLT1D LTR MaLR -343 162 5 4 1113 258 193 0 0 chr3 69218428 69218485 -90381298 + (ATG)n Simple_repeat Simple_repeat 3 59 0 4 1113 24 32 0 0 chr3 69218521 69218552 -90381231 + AT_rich Low_complexity Low_complexity 1 31 0 4 1113 247 322 23 0 chr3 69219496 69219583 -90380200 + (CATG)n Simple_repeat Simple_repeat 1 89 0 4 1113 378 300 30 74 chr3 69220067 69220366 -90379417 - B4A SINE B4 -5 287 2 4 1113 626 202 146 11 chr3 69220713 69220898 -90378885 - B3 SINE B2 -5 211 2 4 1113 307 254 28 14 chr3 69220967 69221039 -90378744 + B4 SINE B4 4 76 -216 4 1113 1424 249 58 20 chr3 69221050 69221447 -90378336 + MTD LTR MaLR 8 419 0 4 1113 295 312 42 99 chr3 69221451 69221593 -90378190 + B4 SINE B4 82 215 -77 4 1113 199 29 56 28 chr3 69221603 69221639 -90378144 + (GAAA)n Simple_repeat Simple_repeat 1 37 0 4 1113 228 122 0 0 chr3 69221686 69221727 -90378056 + (CA)n Simple_repeat Simple_repeat 2 42 0 4 1113 25 0 0 0 chr3 69221825 69221850 -90377933 + AT_rich Low_complexity Low_complexity 1 25 0 4 1113 474 120 0 0 chr3 69221996 69222071 -90377712 + (TG)n Simple_repeat Simple_repeat 2 76 0 4 1113 618 283 159 5 chr3 69222073 69222293 -90377490 - B4A SINE B4 0 292 39 4 1113 316 243 84 0 chr3 69223315 69223422 -90376361 + B4A SINE B4 177 292 0 4 1113 306 0 0 0 chr3 69224220 69224254 -90375529 + (GA)n Simple_repeat Simple_repeat 2 35 0 4 1113 452 81 14 0 chr3 69224881 69224955 -90374828 + (TA)n Simple_repeat Simple_repeat 1 75 0 4 1113 4387 106 67 17 chr3 69225142 69225860 -90373923 + RMER6A LTR ERVK 3 756 0 4 1113 1842 157 16 0 chr3 69225932 69226251 -90373532 - MTC LTR MaLR 0 421 98 4 1113 1775 145 43 57 chr3 69226255 69226606 -90373177 - ORR1B1 LTR MaLR -8 386 41 4 1113 385 196 152 0 chr3 69226609 69226701 -90373082 - MTC LTR MaLR -315 106 1 4 1113 309 253 189 20 chr3 69227348 69227501 -90372282 + RMER30 DNA MER1_type 1 179 -23 4 1113 747 0 0 0 chr3 69227842 69227925 -90371858 + (TTTC)n Simple_repeat Simple_repeat 1 83 0 5 1113 1203 57 6 0 chr3 69227925 69228084 -90371699 - B2_Mm2 SINE B2 -34 161 2 5 1113 210 37 0 0 chr3 69228220 69228247 -90371536 + (TCTCTG)n Simple_repeat Simple_repeat 2 28 0 5 1113 324 0 0 0 chr3 69228248 69228284 -90371499 + (TG)n Simple_repeat Simple_repeat 1 36 0 5 1113 519 295 8 0 chr3 69228329 69228458 -90371325 + ID_B1 SINE B4 88 217 -7 5 1113 201 196 0 0 chr3 69228863 69228914 -90370869 + (CAG)n Simple_repeat Simple_repeat 2 52 0 5 1113 489 76 0 0 chr3 69228984 69229050 -90370733 + (TCCC)n Simple_repeat Simple_repeat 1 66 0 5 1113 360 0 0 0 chr3 69230825 69230865 -90368918 + (TG)n Simple_repeat Simple_repeat 2 41 0 5 1113 670 223 36 13 chr3 69231036 69231186 -90368597 - ID_B1 SINE B4 -69 223 78 5 1113 407 195 11 33 chr3 69231195 69231285 -90368498 + B3 SINE B2 1 88 -128 5 1113 234 0 0 0 chr3 69232706 69232732 -90367051 + (A)n Simple_repeat Simple_repeat 1 26 0 5 1113 311 290 179 10 chr3 69232810 69233005 -90366778 + MLT1G1 LTR MaLR 13 240 -339 5 1113 2118 143 33 3 chr3 69233059 69233395 -90366388 - ORR1A1 LTR MaLR 0 346 1 5 1113 213 256 119 24 chr3 69233754 69233838 -90365945 - RSINE1 SINE B4 -70 95 4 5 1113 485 289 93 58 chr3 69233943 69234200 -90365583 + MLT1G1 LTR MaLR 290 555 -24 5 1113 342 45 0 0 chr3 69236584 69236628 -90363155 + (TG)n Simple_repeat Simple_repeat 2 45 0 5 1113 215 31 31 0 chr3 69236898 69236930 -90362853 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 5 1113 221 218 64 75 chr3 69237256 69237350 -90362433 - B4A SINE B4 -152 140 48 5 1113 3158 128 48 17 chr3 69238673 69239214 -90360569 + RLTR12A LTR ERVK 1 558 -10 5 1113 198 167 0 0 chr3 69239575 69239611 -90360172 + GA-rich Low_complexity Low_complexity 2 37 0 5 1113 225 287 103 17 chr3 69239657 69239774 -90360009 - MLT1A LTR MaLR -220 154 28 5 1113 1030 219 195 62 chr3 69240571 69240941 -90358842 + MT2A LTR ERVL 3 421 -112 5 1113 423 0 0 0 chr3 69240978 69241025 -90358758 + (TG)n Simple_repeat Simple_repeat 2 48 0 5 1113 263 274 108 0 chr3 69241171 69241273 -90358510 - MER5A DNA MER1_type -76 113 1 5 1113 219 45 21 43 chr3 69241540 69241587 -90358196 + (TTTG)n Simple_repeat Simple_repeat 2 47 0 5 1113 259 232 155 21 chr3 69243367 69243464 -90356319 - L1ME1 LINE L1 -14 6165 6056 5 1113 385 299 51 0 chr3 69243825 69243962 -90355821 - B1F1 SINE Alu -5 144 1 5 1113 392 260 0 0 chr3 69243969 69244042 -90355741 - ID SINE ID -151 73 1 5 1113 232 323 96 8 chr3 69244267 69244392 -90355391 + MIRc SINE MIR 20 155 -113 5 1113 916 145 14 0 chr3 69245948 69246093 -90353690 - B1_Mus2 SINE Alu 0 147 1 5 1113 1562 23 0 0 chr3 69246510 69246683 -90353100 - B2_Mm1a SINE B2 -19 174 2 5 1113 436 176 87 19 chr3 69247091 69247195 -90352588 - B3 SINE B2 -103 113 3 5 1113 667 248 6 24 chr3 69247287 69247452 -90352331 - RSINE1 SINE B4 0 165 4 5 1113 683 184 42 14 chr3 69247683 69247826 -90351957 - B1_Mur4 SINE Alu 0 150 4 5 1113 323 293 53 67 chr3 69247693 69247843 -90351940 - B4A SINE B4 -73 219 72 5 1113 963 146 30 0 chr3 69248338 69248503 -90351280 + L1_Mur2 LINE L1 4194 4363 -1514 5 1113 471 170 100 36 chr3 69248572 69248712 -90351071 + RLTR42-int LTR ERVK 4091 4239 -1283 5 1113 612 147 0 27 chr3 69249695 69249807 -90349976 - PB1D7 SINE Alu 0 120 12 5 1113 443 222 8 42 chr3 69250547 69250701 -90349082 - PB1D10 SINE Alu 0 149 8 5 1113 958 334 71 14 chr3 69251345 69251779 -90348004 - Lx8 LINE L1 -292 7181 6723 5 1113 1197 181 19 0 chr3 69251805 69252015 -90347768 - B3 SINE B2 0 216 3 5 1113 931 126 21 0 chr3 69252465 69252608 -90347175 - B1_Mus1 SINE Alu -2 146 1 5 1113 268 296 74 0 chr3 69252687 69252822 -90346961 + L1ME4a LINE L1 5979 6123 -1 5 1113 422 269 71 43 chr3 69253020 69253160 -90346623 - RSINE1 SINE B4 -9 156 13 5 1113 369 0 0 0 chr3 69253173 69253214 -90346569 + (TG)n Simple_repeat Simple_repeat 1 41 0 5 1113 685 161 20 65 chr3 69254531 69254684 -90345099 + B1_Mur1 SINE Alu 3 148 -1 5 1113 320 68 0 0 chr3 69254913 69254957 -90344826 - B2_Mm2 SINE B2 -31 164 121 5 1113 22 0 0 0 chr3 69255054 69255076 -90344707 + AT_rich Low_complexity Low_complexity 1 22 0 5 1113 194 139 0 44 chr3 69255105 69255150 -90344633 + CT-rich Low_complexity Low_complexity 2 44 0 5 1113 500 221 56 28 chr3 69255206 69255350 -90344433 - B1F SINE Alu 0 149 2 5 1113 527 322 28 11 chr3 69255681 69255860 -90343923 + B3 SINE B2 3 184 -32 5 1113 257 361 42 0 chr3 69255911 69256030 -90343753 - MIRb SINE MIR -119 149 26 5 1113 183 80 0 0 chr3 69256070 69256095 -90343688 + (CAAA)n Simple_repeat Simple_repeat 1 25 0 5 1113 476 316 170 55 chr3 69256654 69256928 -90342855 - LTR33 LTR ERVL -79 436 136 5 1113 180 0 0 0 chr3 69256928 69256948 -90342835 + (TGG)n Simple_repeat Simple_repeat 1 20 0 5 1113 476 316 170 55 chr3 69256948 69257055 -90342728 - LTR33 LTR ERVL -380 135 11 5 1113 468 240 0 0 chr3 69257411 69257532 -90342251 + CT-rich Low_complexity Low_complexity 1 121 0 5 1113 239 319 70 17 chr3 69258145 69258260 -90341523 - L2 LINE L2 -875 2544 2424 5 1113 231 224 209 0 chr3 69259436 69259503 -90340280 + ID4 SINE ID 1 81 -2 5 1113 856 197 4 14 chr3 69259761 69259942 -90339841 - B3A SINE B2 -30 186 4 5 1113 270 253 50 12 chr3 69260300 69260380 -90339403 - ORR1E LTR MaLR -276 83 1 5 1113 360 0 0 0 chr3 69261607 69261647 -90338136 + (TG)n Simple_repeat Simple_repeat 1 40 0 5 1113 629 260 69 118 chr3 69261652 69261957 -90337826 - B4A SINE B4 -1 291 2 5 1113 415 178 0 0 chr3 69261970 69262043 -90337740 - PB1D10 SINE Alu -5 112 40 5 1113 269 196 152 29 chr3 69262043 69262073 -90337710 - ID_B1 SINE B4 -3 219 104 5 1113 1193 54 7 0 chr3 69262203 69262350 -90337433 + B1_Mus1 SINE Alu 1 148 0 5 1113 301 254 0 14 chr3 69263365 69263437 -90336346 + ID4 SINE ID 12 82 -1 5 1113 290 370 30 18 chr3 69264080 69264245 -90335538 + Tigger15a DNA TcMar 143 309 -406 5 1113 800 284 35 0 chr3 69264963 69265160 -90334623 + ID_B1 SINE B4 3 206 -18 5 1113 1677 148 27 62 chr3 69265689 69266140 -90333643 - RMER17C LTR ERVK -517 441 16 5 1113 420 20 0 0 chr3 69266202 69266251 -90333532 + (TC)n Simple_repeat Simple_repeat 1 49 0 5 1113 1132 178 13 48 chr3 69266296 69266526 -90333257 + URR1A DNA MER1_type 1 222 -4 5 1113 675 37 0 0 chr3 69267618 69267700 -90332083 + (CA)n Simple_repeat Simple_repeat 1 82 0 5 1113 186 103 0 0 chr3 69268278 69268307 -90331476 + (TCTG)n Simple_repeat Simple_repeat 2 30 0 5 1113 908 256 9 14 chr3 69268413 69268627 -90331156 - B3 SINE B2 -3 213 1 5 1113 22 0 0 0 chr3 69268690 69268712 -90331071 + AT_rich Low_complexity Low_complexity 1 22 0 5 1113 2285 158 32 5 chr3 69269251 69269653 -90330130 - MTC LTR MaLR -8 413 1 5 1113 358 209 159 38 chr3 69270223 69270415 -90329368 + B3A SINE B2 1 211 -5 5 1113 315 248 172 8 chr3 69274428 69274562 -90325221 + RSINE1 SINE B4 1 156 -9 5 1113 485 293 158 37 chr3 69275001 69275280 -90324503 + MLT1A0 LTR MaLR 3 321 -44 5 1113 2025 149 114 5 chr3 69275280 69275658 -90324125 + MTC LTR MaLR 1 419 -2 5 1113 485 293 158 37 chr3 69275658 69275701 -90324082 + MLT1A0 LTR MaLR 322 364 -1 5 1113 315 318 0 98 chr3 69275886 69276029 -90323754 - LTR78 LTR ERV1 -15 1289 1161 5 1113 441 118 13 0 chr3 69276231 69276307 -90323476 + L1_Mus3 LINE L1 6550 6626 -12 5 1113 198 0 0 0 chr3 69276311 69276333 -90323450 + (GA)n Simple_repeat Simple_repeat 2 23 0 5 1113 248 315 63 0 chr3 69276567 69276710 -90323073 - LTR78 LTR ERV1 -712 592 441 5 1113 1367 202 112 14 chr3 69278212 69278564 -90321219 + ORR1C2 LTR MaLR 1 378 0 5 1113 441 208 0 0 chr3 69279190 69279267 -90320516 - ID4_ SINE ID -4 79 3 5 1113 245 242 146 10 chr3 69279355 69279451 -90320332 + MIR SINE MIR 35 143 -119 5 1113 203 122 20 0 chr3 69280724 69280773 -90319010 + (TTTTG)n Simple_repeat Simple_repeat 2 51 0 5 1113 459 0 0 0 chr3 69281762 69281813 -90317970 + (TA)n Simple_repeat Simple_repeat 2 52 0 5 1113 225 0 0 0 chr3 69281817 69281842 -90317941 + (TG)n Simple_repeat Simple_repeat 2 26 0 5 1113 1165 63 0 0 chr3 69282750 69282892 -90316891 + B1_Mus1 SINE Alu 1 142 -6 5 1113 33 0 0 0 chr3 69282898 69282931 -90316852 + AT_rich Low_complexity Low_complexity 1 33 0 5 1113 270 136 0 0 chr3 69283115 69283159 -90316624 + (TG)n Simple_repeat Simple_repeat 1 44 0 5 1113 250 268 0 14 chr3 69283159 69283231 -90316552 - BC1_Mm scRNA scRNA -73 79 9 5 1113 234 0 0 0 chr3 69283259 69283285 -90316498 + (CA)n Simple_repeat Simple_repeat 2 27 0 5 1113 283 285 51 77 chr3 69285650 69285806 -90313977 + L2c LINE L2 3236 3387 0 5 1113 231 326 22 0 chr3 69287431 69287520 -90312263 + MIRb SINE MIR 160 250 -18 5 1113 23 33 0 0 chr3 69288908 69288938 -90310845 + AT_rich Low_complexity Low_complexity 1 30 0 5 1113 351 313 72 13 chr3 69288938 69289090 -90310693 + RSINE1 SINE B4 4 164 -1 5 1113 216 67 0 0 chr3 69289137 69289167 -90310616 + (CAA)n Simple_repeat Simple_repeat 2 31 0 5 1113 24 32 0 0 chr3 69290180 69290211 -90309572 + AT_rich Low_complexity Low_complexity 1 31 0 5 1113 234 0 0 0 chr3 69291517 69291543 -90308240 + (CA)n Simple_repeat Simple_repeat 2 27 0 5 1113 454 212 124 152 chr3 69292490 69292646 -90307137 - MTD LTR MaLR -57 362 195 6 1113 889 219 24 43 chr3 69292646 69292856 -90306927 - B3 SINE B2 -10 206 1 6 1113 454 212 124 152 chr3 69292856 69292916 -90306867 - MTD LTR MaLR -225 194 152 6 1113 588 65 0 0 chr3 69293239 69293316 -90306467 + (GA)n Simple_repeat Simple_repeat 1 77 0 6 1113 200 289 0 19 chr3 69293338 69293391 -90306392 + GA-rich Low_complexity Low_complexity 1 52 0 6 1113 213 178 0 0 chr3 69293493 69293538 -90306245 + (CA)n Simple_repeat Simple_repeat 2 46 0 6 1113 945 152 0 0 chr3 69294469 69294688 -90305095 + (TG)n Simple_repeat Simple_repeat 1 219 0 6 1113 844 144 54 5 chr3 69295054 69295257 -90304526 - RLTR28 LTR ERVL 0 524 312 6 1113 312 244 47 0 chr3 69295242 69295328 -90304455 + B3 SINE B2 48 137 -79 6 1113 856 240 59 0 chr3 69297947 69298151 -90301632 + B3 SINE B2 1 216 0 6 1113 22 0 0 0 chr3 69298195 69298217 -90301566 + AT_rich Low_complexity Low_complexity 1 22 0 6 1113 430 139 23 0 chr3 69299395 69299481 -90300302 + (CA)n Simple_repeat Simple_repeat 1 88 0 6 1113 530 233 66 29 chr3 69299589 69299726 -90300057 + B1_Mur1 SINE Alu 3 144 -5 6 1113 311 258 123 48 chr3 69299736 69299964 -90299819 - L1MA8 LINE L1 -110 6181 5937 6 1113 451 178 29 10 chr3 69300048 69300150 -90299633 - L1M2 LINE L1 -1482 4661 4558 6 1113 228 121 0 0 chr3 69300151 69300184 -90299599 - L1M2 LINE L1 -1553 4590 4558 6 1113 320 208 90 40 chr3 69300217 69300317 -90299466 - L1M2 LINE L1 -1551 4592 4488 6 1113 267 103 0 0 chr3 69300983 69301022 -90298761 + (TAA)n Simple_repeat Simple_repeat 3 41 0 6 1113 522 83 0 0 chr3 69301050 69301122 -90298661 + (TC)n Simple_repeat Simple_repeat 2 73 0 6 1113 606 199 212 28 chr3 69302511 69302723 -90297060 - MTD LTR MaLR 0 419 169 6 1113 383 272 26 17 chr3 69303930 69304046 -90295737 + ID_B1 SINE B4 101 217 -7 6 1113 322 339 0 17 chr3 69304243 69304363 -90295420 - MLT1A0 LTR MaLR -171 194 77 6 1113 181 388 47 0 chr3 69304828 69304913 -90294870 + MIR SINE MIR 23 111 -97 6 1113 228 111 175 0 chr3 69305225 69305288 -90294495 + PB1D10 SINE Alu 43 116 -1 6 1113 487 239 0 22 chr3 69307010 69307194 -90292589 + (TG)n Simple_repeat Simple_repeat 1 180 0 6 1113 1271 131 0 10 chr3 69308159 69308352 -90291431 - B2_Mm2 SINE B2 -4 191 1 6 1113 2786 145 45 54 chr3 69310163 69310696 -90289087 - RLTR24 LTR ERV1 0 529 2 6 1113 1223 29 0 0 chr3 69311046 69311185 -90288598 - B1_Mus1 SINE Alu -9 139 1 6 1113 1763 266 128 55 chr3 69311789 69312557 -90287226 - Lx8 LINE L1 -211 7262 6439 6 1113 297 89 0 0 chr3 69312573 69312618 -90287165 + (CA)n Simple_repeat Simple_repeat 2 46 0 6 1113 358 306 59 70 chr3 69313374 69313560 -90286223 + MER20 DNA MER1_type 33 216 -3 6 1113 203 290 78 29 chr3 69313585 69313688 -90286095 + MER5B DNA MER1_type 22 129 -49 6 1113 203 158 0 0 chr3 69314313 69314351 -90285432 + T-rich Low_complexity Low_complexity 4 41 0 6 1113 440 247 40 10 chr3 69315503 69315673 -90284110 - MLT1F1 LTR MaLR -354 225 1 6 1113 333 0 0 0 chr3 69316153 69316190 -90283593 + (TG)n Simple_repeat Simple_repeat 1 37 0 6 1113 1070 75 0 27 chr3 69316190 69316413 -90283370 + (GA)n Simple_repeat Simple_repeat 1 216 0 6 1113 1321 41 136 0 chr3 69317006 69317175 -90282608 + B2_Mm1t SINE B2 1 192 -1 6 1113 1948 148 240 5 chr3 69317559 69317967 -90281816 - Lx4A LINE L1 -1 7057 6554 6 1113 183 139 0 0 chr3 69318032 69318068 -90281715 + (CAGAGA)n Simple_repeat Simple_repeat 2 37 0 6 1113 374 279 36 29 chr3 69319797 69319937 -90279846 - RSINE1 SINE B4 -22 143 3 6 1113 273 358 37 12 chr3 69320090 69320251 -90279532 - MIR SINE MIR -77 185 21 6 1113 472 160 86 20 chr3 69321374 69321487 -90278296 - PB1D9 SINE Alu 0 120 5 6 1113 1270 87 17 0 chr3 69321664 69321836 -90277947 - B2_Mm2 SINE B2 -19 176 2 6 1113 416 298 25 6 chr3 69321839 69322001 -90277782 - L1M2 LINE L1 -1087 5056 4892 6 1113 206 238 200 0 chr3 69322132 69322212 -90277571 - L2 LINE L2 -1029 2390 2295 6 1113 491 260 55 85 chr3 69322367 69322531 -90277252 + RSINE1 SINE B4 3 161 -4 6 1113 1372 229 72 3 chr3 69326049 69326339 -90273444 - ORR1D2 LTR MaLR 0 370 61 6 1113 2166 149 15 63 chr3 69326339 69326734 -90273049 + ORR1C1 LTR MaLR 3 378 0 6 1113 1372 229 72 3 chr3 69326734 69326789 -90272994 - ORR1D2 LTR MaLR -310 60 2 6 1113 254 258 62 31 chr3 69326789 69326881 -90272902 + PB1D10 SINE Alu 22 116 -1 6 1113 572 211 102 0 chr3 69327720 69327848 -90271935 - B1_Mur3 SINE Alu -5 144 4 6 1113 456 299 16 8 chr3 69327929 69328057 -90271726 - RSINE1 SINE B4 -10 155 27 6 1113 330 294 215 50 chr3 69328242 69328521 -90271262 + MLT1E1 LTR MaLR 314 638 -16 6 1113 809 163 6 17 chr3 69329670 69329851 -90269932 + (TG)n Simple_repeat Simple_repeat 2 180 0 6 1113 237 33 0 0 chr3 69330296 69330326 -90269457 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 6 1113 201 74 0 0 chr3 69330848 69330875 -90268908 + (TTCC)n Simple_repeat Simple_repeat 1 27 0 6 1113 292 240 16 0 chr3 69331089 69331210 -90268573 + (TAGA)n Simple_repeat Simple_repeat 1 123 0 6 1113 820 317 52 35 chr3 69331259 69331684 -90268099 - L1MB7 LINE L1 -25 6159 5728 6 1113 224 157 0 19 chr3 69331752 69331804 -90267979 + T-rich Low_complexity Low_complexity 4 54 0 6 1113 23 0 0 0 chr3 69331812 69331835 -90267948 + AT_rich Low_complexity Low_complexity 1 23 0 6 1113 8101 58 6 5 chr3 69332001 69333014 -90266769 - L1Md_F2 LINE L1 -11 6571 5587 6 1113 607 202 0 0 chr3 69333015 69333119 -90266664 - B1_Mus2 SINE Alu -2 145 42 6 1113 339 150 0 77 chr3 69333195 69333260 -90266523 - B1_Mur4 SINE Alu -90 60 1 6 1113 371 241 70 18 chr3 69333260 69333374 -90266409 - L1MB7 LINE L1 -507 5677 5558 6 1113 270 250 78 45 chr3 69333403 69333598 -90266185 - L1M4 LINE L1 -4791 1855 1635 6 1113 337 173 0 0 chr3 69333728 69333780 -90266003 + MTE2b LTR MaLR 325 376 -3 6 1113 610 326 55 75 chr3 69333845 69334339 -90265444 - L1M4 LINE L1 -6045 497 14 6 1113 392 259 69 35 chr3 69336040 69336156 -90263627 + MLT1F2 LTR MaLR 5 124 -445 6 1113 1118 88 0 0 chr3 69336203 69336350 -90263433 - B1_Mus1 SINE Alu 0 148 2 6 1113 282 116 0 0 chr3 69336374 69336417 -90263366 + (TATATG)n Simple_repeat Simple_repeat 4 46 0 6 1113 231 36 0 0 chr3 69336417 69336445 -90263338 + (GA)n Simple_repeat Simple_repeat 2 29 0 6 1113 567 295 149 36 chr3 69336467 69336776 -90263007 + MLT1F2 LTR MaLR 184 527 -33 6 139 2891 55 43 33 chr3 69336882 69337278 -90262505 + MTB LTR MaLR 1 400 0 6 1114 4752 91 36 72 chr3 69337330 69338169 -90261614 + RMER17D2 LTR ERVK 1 809 0 6 1114 793 249 96 0 chr3 69338672 69338869 -90260914 + B3 SINE B2 1 216 0 6 1114 565 264 82 31 chr3 69339102 69339297 -90260486 + B3 SINE B2 9 213 -3 6 1114 1195 184 23 5 chr3 69340928 69341146 -90258637 - URR1A DNA MER1_type -2 224 3 6 1114 648 254 8 0 chr3 69341822 69341952 -90257831 - B1_Mur2 SINE Alu -17 132 2 6 1114 662 253 63 31 chr3 69341969 69342128 -90257655 - RSINE1 SINE B4 0 165 2 6 1114 180 333 106 79 chr3 69342348 69342537 -90257246 + MIRb SINE MIR 52 245 -23 6 1114 24 0 0 0 chr3 69342743 69342767 -90257016 + AT_rich Low_complexity Low_complexity 1 24 0 6 1114 185 226 94 0 chr3 69342948 69343001 -90256782 + MIR3 SINE MIR 105 162 -46 6 1114 1164 77 0 0 chr3 69344582 69344751 -90255032 + (TG)n Simple_repeat Simple_repeat 2 170 0 6 1114 230 279 161 59 chr3 69345306 69345424 -90254359 + MER102a DNA MER1_type 54 183 -147 6 1114 182 330 58 84 chr3 69346662 69346887 -90252896 - L2a LINE L2 0 3426 3208 6 1114 357 301 24 16 chr3 69347387 69347512 -90252271 - ID_B1 SINE B4 -1 223 98 6 1114 404 186 8 0 chr3 69348053 69348171 -90251612 + (TA)n Simple_repeat Simple_repeat 1 119 0 6 1114 261 0 0 0 chr3 69348171 69348200 -90251583 + (CA)n Simple_repeat Simple_repeat 1 29 0 6 1114 3270 53 2 5 chr3 69348468 69348869 -90250914 + MTB LTR MaLR 1 400 0 6 1114 227 279 162 45 chr3 69349265 69349419 -90250364 - Charlie15a DNA MER1_type -19 205 34 6 1114 3244 161 8 17 chr3 69349798 69350648 -90249135 - Lx7 LINE L1 -1481 6215 5364 6 1114 1823 141 52 0 chr3 69350648 69350939 -90248844 + MTC LTR MaLR 1 306 -115 6 1114 508 209 19 38 chr3 69350985 69351144 -90248639 - RMER17C LTR ERVK -135 275 120 6 1114 3922 137 57 67 chr3 69351144 69351948 -90247835 - Lx7 LINE L1 -606 5274 4479 6 1114 1054 209 19 0 chr3 69351936 69352142 -90247641 + Lx7 LINE L1 6887 7096 -600 6 1114 183 42 0 0 chr3 69353420 69353444 -90246339 + (CCA)n Simple_repeat Simple_repeat 2 25 0 6 1114 224 254 134 0 chr3 69353530 69353597 -90246186 - PB1D10 SINE Alu -29 88 13 6 1114 207 0 0 0 chr3 69354268 69354291 -90245492 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 6 1114 22 0 0 0 chr3 69354311 69354333 -90245450 + AT_rich Low_complexity Low_complexity 1 22 0 6 1114 991 253 43 31 chr3 69354511 69354893 -90244890 - MT2A LTR ERVL -47 554 1 6 1114 1216 270 65 24 chr3 69354925 69355343 -90244440 - Lx8 LINE L1 -166 7307 6873 6 1114 278 319 93 7 chr3 69355533 69355672 -90244111 - MIRb SINE MIR -92 176 26 6 1114 373 308 46 0 chr3 69355990 69356120 -90243663 + B1F SINE Alu 5 140 -9 6 1114 192 231 105 93 chr3 69360629 69360715 -90239068 - L4 LINE RTE -250 1779 1693 6 1114 207 162 0 0 chr3 69361315 69361352 -90238431 + (CA)n Simple_repeat Simple_repeat 1 37 0 6 1114 23 0 0 0 chr3 69364907 69364930 -90234853 + AT_rich Low_complexity Low_complexity 1 23 0 6 1114 302 302 47 0 chr3 69365363 69365449 -90234334 + PB1D10 SINE Alu 18 107 -10 6 1114 739 203 22 0 chr3 69366593 69366731 -90233052 + B1_Mur3 SINE Alu 9 149 0 6 1114 2383 98 3 15 chr3 69366758 69367091 -90232692 + ORR1A4 LTR MaLR 1 329 0 7 1114 22 0 0 0 chr3 69367419 69367441 -90232342 + GC_rich Low_complexity Low_complexity 1 22 0 7 1114 465 200 0 0 chr3 69368072 69368157 -90231626 + PB1D10 SINE Alu 33 117 0 7 1114 1167 58 0 0 chr3 69368292 69368430 -90231353 + B1_Mm SINE Alu 1 138 -9 7 1114 265 295 53 9 chr3 69368506 69368619 -90231164 + L1M5 LINE L1 5630 5747 -417 7 1114 624 67 0 0 chr3 69368660 69368750 -90231033 + (TG)n Simple_repeat Simple_repeat 1 90 0 7 1114 263 340 94 13 chr3 69368750 69368899 -90230884 - B3 SINE B2 -54 162 2 7 1114 315 313 133 39 chr3 69369213 69369416 -90230367 + L1M5 LINE L1 4367 4588 -1558 7 1114 180 111 0 0 chr3 69369416 69369443 -90230340 + (CAA)n Simple_repeat Simple_repeat 1 27 0 7 1114 363 149 0 134 chr3 69369553 69369755 -90230028 + (CAGTG)n Simple_repeat Simple_repeat 1 175 0 7 1114 239 231 14 97 chr3 69369980 69370052 -90229731 + ID4_ SINE ID 2 67 -16 7 1114 260 348 0 0 chr3 69370070 69370162 -90229621 + L1MC LINE L1 4682 4773 -1373 7 1114 225 35 0 0 chr3 69372456 69372485 -90227298 - MTEb LTR MaLR -25 394 366 7 1114 249 109 0 0 chr3 69372486 69372532 -90227251 + (T)n Simple_repeat Simple_repeat 1 46 0 7 1114 314 169 53 66 chr3 69372551 69372627 -90227156 - URR1B DNA MER1_type 0 225 151 7 1114 217 328 0 59 chr3 69372890 69372958 -90226825 + PB1D10 SINE Alu 6 69 -48 7 1114 346 320 65 13 chr3 69373339 69373453 -90226330 - MTEb LTR MaLR -15 364 248 7 1114 4975 95 78 0 chr3 69373453 69374137 -90225646 - RMER19A LTR ERVK 0 737 1 7 1114 346 320 65 13 chr3 69374137 69374177 -90225606 - MTEb LTR MaLR -132 247 203 7 1114 4606 96 79 8 chr3 69374382 69375052 -90224731 + RMER19A LTR ERVK 20 737 0 7 1114 375 269 41 25 chr3 69375052 69375166 -90224617 + MTEb LTR MaLR 249 364 -15 7 1114 217 328 0 59 chr3 69375547 69375615 -90224168 - PB1D10 SINE Alu -48 69 6 7 1114 314 169 53 66 chr3 69375878 69375954 -90223829 + URR1B DNA MER1_type 151 225 0 7 1114 258 106 0 0 chr3 69375973 69376020 -90223763 + (A)n Simple_repeat Simple_repeat 1 47 0 7 1114 225 35 0 0 chr3 69376021 69376050 -90223733 + MTEb LTR MaLR 366 394 -25 7 1114 226 338 89 38 chr3 69376619 69376776 -90223007 + MLT1I LTR MaLR 227 391 -20 7 1114 664 259 21 0 chr3 69377037 69377180 -90222603 - RSINE1 SINE B4 -17 148 3 7 1114 388 228 118 11 chr3 69380059 69380152 -90219631 + PB1 SINE Alu 23 125 -2 7 1114 321 305 147 0 chr3 69380208 69380398 -90219385 - L1MA4 LINE L1 -368 5932 5715 7 1114 269 227 0 205 chr3 69381293 69381319 -90218464 - B4A SINE B4 -144 148 86 7 1114 310 204 0 0 chr3 69381319 69381373 -90218410 - PB1D9 SINE Alu -66 54 1 7 1114 373 302 48 48 chr3 69381508 69381532 -90218251 - CYRA11_Mm Unknown Y-chromosome -210 407 384 7 1114 713 231 110 0 chr3 69381532 69381705 -90218078 + URR1B DNA MER1_type 3 194 -31 7 1114 511 277 84 8 chr3 69381783 69381914 -90217869 + B4A SINE B4 97 237 -55 7 1114 392 214 14 0 chr3 69382011 69382081 -90217702 + B4A SINE B4 217 287 -5 7 1114 1363 65 27 21 chr3 69382168 69382356 -90217427 + B2_Mm2 SINE B2 1 189 -6 7 1114 1266 219 42 35 chr3 69382369 69382657 -90217126 + B4A SINE B4 3 292 0 7 1114 726 235 109 16 chr3 69382788 69382991 -90216792 + B3 SINE B2 1 214 -2 7 1114 420 37 0 0 chr3 69382991 69383045 -90216738 + (CA)n Simple_repeat Simple_repeat 2 55 0 7 1114 491 250 14 135 chr3 69383045 69383063 -90216720 + B2_Mm2 SINE B2 178 195 0 7 1114 323 299 74 68 chr3 69383286 69383462 -90216321 + L1MEe LINE L1 920 1096 -3758 7 1114 645 218 28 0 chr3 69383924 69384066 -90215717 + B1_Mm SINE Alu 2 147 0 7 1114 281 54 0 26 chr3 69385017 69385055 -90214728 - B2_Mm2 SINE B2 -112 83 47 7 1114 223 235 19 19 chr3 69385018 69385070 -90214713 - B4A SINE B4 -209 83 32 7 1114 1345 73 11 0 chr3 69385085 69385262 -90214521 - B2_Mm1a SINE B2 -12 181 3 7 1114 2209 103 18 50 chr3 69386098 69386155 -90213628 - ORR1A2 LTR MaLR 0 327 272 7 1114 1239 80 74 6 chr3 69386155 69386331 -90213452 - B2_Mm2 SINE B2 -7 188 1 7 1114 2209 103 18 50 chr3 69386331 69386611 -90213172 - ORR1A2 LTR MaLR -56 271 1 7 1114 6345 89 27 6 chr3 69386623 69387536 -90212247 - ORR1A2-int LTR MaLR -32 1931 999 7 1114 1941 90 0 15 chr3 69387547 69387817 -90211966 - ORR1A2 LTR MaLR -61 266 1 7 1114 4363 42 0 8 chr3 69388907 69389414 -90210369 + RLTR1C LTR ERV1 1 503 0 7 1114 1349 167 169 103 chr3 69389804 69390164 -90209619 - ORR1C2 LTR MaLR 0 384 1 7 1114 2125 171 44 17 chr3 69390610 69391020 -90208763 - MTC LTR MaLR 0 421 1 7 1114 275 211 190 17 chr3 69391656 69391772 -90208011 - MT2A LTR ERVL -3 530 395 7 1114 198 0 0 0 chr3 69392497 69392519 -90207264 + (GCTG)n Simple_repeat Simple_repeat 4 25 0 7 1114 348 178 0 0 chr3 69392948 69393055 -90206728 + (TA)n Simple_repeat Simple_repeat 1 107 0 7 1114 519 181 21 0 chr3 69393482 69393599 -90206184 + ORR1D1 LTR MaLR 52 178 -206 7 1114 305 259 0 0 chr3 69393573 69393654 -90206129 + ORR1D1 LTR MaLR 294 374 0 7 1114 2567 178 22 8 chr3 69393665 69394178 -90205605 + ORR1D1-int LTR MaLR 12 558 -812 7 1114 387 41 0 0 chr3 69394178 69394227 -90205556 + (TG)n Simple_repeat Simple_repeat 1 49 0 7 1114 1968 255 64 20 chr3 69394227 69394657 -90205126 + ORR1D1-int LTR MaLR 556 1008 -362 7 1114 240 303 97 16 chr3 69395243 69395367 -90204416 + MER5A1 DNA MER1_type 29 162 -4 7 1114 315 0 0 0 chr3 69396086 69396121 -90203662 + (TG)n Simple_repeat Simple_repeat 1 35 0 7 1114 376 253 22 0 chr3 69396126 69396217 -90203566 - RSINE1 SINE B4 -13 152 60 7 1114 662 247 85 11 chr3 69397879 69398055 -90201728 - B3A SINE B2 -9 189 1 7 1114 439 246 84 10 chr3 69399419 69399600 -90200183 + B4A SINE B4 1 230 -62 7 1114 509 263 7 43 chr3 69399600 69399739 -90200044 + RSINE1 SINE B4 3 136 -29 7 1114 25 31 0 0 chr3 69399745 69399777 -90200006 + AT_rich Low_complexity Low_complexity 1 32 0 7 1114 2257 89 41 3 chr3 69400012 69400329 -90199454 - ORR1A4 LTR MaLR 0 329 1 7 1114 561 287 20 60 chr3 69401259 69401459 -90198324 + B3 SINE B2 1 192 -24 7 1114 218 215 30 15 chr3 69402671 69402737 -90197046 + (CCCG)n Simple_repeat Simple_repeat 1 67 0 7 1114 216 255 30 10 chr3 69402756 69402855 -90196928 + (CG)n Simple_repeat Simple_repeat 1 101 0 7 1114 1211 41 7 0 chr3 69404675 69404821 -90194962 - B1_Mm SINE Alu 0 147 1 7 1114 719 126 0 0 chr3 69405597 69405708 -90194075 - B2_Mm2 SINE B2 -83 112 2 7 1114 1906 175 121 83 chr3 69406003 69406557 -90193226 + RMER15 LTR ERVL 1 575 0 7 1114 1528 180 48 95 chr3 69406741 69407153 -90192630 + RLTR9C LTR ERVK 1 393 0 7 1114 1191 75 0 0 chr3 69408269 69408416 -90191367 + B1_Mus2 SINE Alu 1 147 0 7 1114 315 0 0 0 chr3 69408423 69408458 -90191325 + (CA)n Simple_repeat Simple_repeat 2 36 0 7 1114 733 227 112 34 chr3 69409136 69409173 -90190610 + ID SINE ID 2 36 -188 7 1114 3410 28 2 22 chr3 69409173 69409577 -90190206 + MTA_Mm LTR MaLR 1 396 0 7 1114 733 227 112 34 chr3 69409577 69409744 -90190039 + ID_B1 SINE B4 37 222 -2 7 1114 542 340 57 46 chr3 69409831 69410112 -90189671 - RMER15 LTR ERVL -17 558 275 7 1114 324 0 0 0 chr3 69410177 69410213 -90189570 + (GA)n Simple_repeat Simple_repeat 1 36 0 7 1114 219 69 0 0 chr3 69410213 69410242 -90189541 + (GAA)n Simple_repeat Simple_repeat 3 31 0 7 1114 1322 28 0 27 chr3 69410242 69410425 -90189358 + (GGGGA)n Simple_repeat Simple_repeat 1 178 0 7 1114 432 0 0 0 chr3 69410427 69410475 -90189308 + (GGGAA)n Simple_repeat Simple_repeat 1 48 0 7 1114 375 83 0 0 chr3 69411064 69411124 -90188659 + (TG)n Simple_repeat Simple_repeat 2 61 0 7 1114 275 133 0 48 chr3 69412563 69412626 -90187157 + RLTR42-int LTR ERVK 899 958 -5179 7 1114 8860 183 41 8 chr3 69412744 69414090 -90185693 + Lx6 LINE L1 5352 6754 -706 7 1114 474 49 0 0 chr3 69414090 69414151 -90185632 + (TG)n Simple_repeat Simple_repeat 2 62 0 7 1114 8860 204 60 10 chr3 69414151 69414815 -90184968 + Lx6 LINE L1 6755 7453 -7 7 1114 281 111 0 0 chr3 69415187 69415223 -90184560 + RLTR42-int LTR ERVK 1750 1785 -3737 7 1114 355 236 19 81 chr3 69415239 69415400 -90184383 + RLTR42-int LTR ERVK 1018 1168 -4969 7 1114 518 181 0 0 chr3 69415991 69416074 -90183709 + B1_Mur4 SINE Alu 2 84 -66 7 1114 655 212 42 0 chr3 69416808 69416926 -90182857 - ETnERV2-int LTR ERVK -214 7192 7070 7 1114 1159 233 99 91 chr3 69416976 69417919 -90181864 + RLTR42-int LTR ERVK 1870 3026 -3111 7 1114 258 184 7 127 chr3 69417971 69418080 -90181703 + RLTR19-int LTR ERVK 3123 3193 -2944 7 1114 1673 173 118 8 chr3 69418217 69418573 -90181210 + MTC LTR MaLR 27 421 0 7 1114 770 234 90 83 chr3 69418584 69418896 -90180887 + RLTR19-int LTR ERVK 3648 3961 -2176 7 1114 252 0 0 0 chr3 69418938 69418966 -90180817 + (TA)n Simple_repeat Simple_repeat 1 28 0 7 1114 5040 207 35 42 chr3 69418967 69420122 -90179661 + Lx7 LINE L1 6527 7673 -23 7 1114 547 222 115 16 chr3 69420125 69420308 -90179475 + L1M2 LINE L1 3766 3966 -2180 7 1114 346 275 127 92 chr3 69420301 69420555 -90179228 + L1_Mur3 LINE L1 4009 4267 -1613 7 1114 210 37 0 0 chr3 69420555 69420582 -90179201 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 7 1114 346 275 127 92 chr3 69420582 69420643 -90179140 + L1_Mur3 LINE L1 4268 4335 -1545 7 1114 782 246 53 19 chr3 69420669 69420765 -90179018 + B3 SINE B2 1 99 -117 7 1114 2705 91 154 0 chr3 69420765 69421226 -90178557 - RLTR47_MM LTR ERV1 0 532 1 7 1114 782 246 53 19 chr3 69421226 69421336 -90178447 + B3 SINE B2 100 214 -2 7 1114 328 287 11 0 chr3 69421392 69421504 -90178279 + L1_Mur3 LINE L1 4402 4514 -1369 7 1114 598 291 12 35 chr3 69421509 69421735 -90178048 - RLTR18B LTR ERVK -1 615 290 7 1114 250 197 0 145 chr3 69421811 69421894 -90177889 + MT2B LTR ERVL 155 225 -376 7 1114 431 126 3 16 chr3 69421827 69421895 -90177888 + B1_Mus1 SINE Alu 5 71 -79 7 1114 1634 112 15 22 chr3 69421895 69422168 -90177615 - RLTR13B4 LTR ERVK -3 800 530 7 1114 2864 36 0 3 chr3 69422168 69422506 -90177277 - IAPLTR1a_Mm LTR ERVK 0 337 1 7 1114 7339 32 2 7 chr3 69422506 69423363 -90176420 - IAPEz-int LTR ERVK 0 6481 5629 7 1114 26401 24 17 9 chr3 69423348 69426391 -90173392 - IAPEz-int LTR ERVK -3405 3076 8 7 1114 2864 36 0 3 chr3 69426391 69426729 -90173054 - IAPLTR1a_Mm LTR ERVK 0 337 1 7 1114 1576 67 0 0 chr3 69426729 69426939 -90172844 - RLTR13B4 LTR ERVK -268 535 326 7 1114 7265 18 0 0 chr3 69426939 69427771 -90172012 + L1_Mm LINE L1 3848 4679 -1204 7 1114 568 103 0 11 chr3 69427771 69427859 -90171924 + RLTR13A LTR ERVK 769 855 0 7 1114 2283 118 17 123 chr3 69427859 69428306 -90171477 - RLTR13B1 LTR ERVK -405 398 1 7 1114 281 325 86 57 chr3 69428306 69428511 -90171272 - RLTR18 LTR ERVK -405 211 1 7 1114 21 0 0 0 chr3 69428514 69428535 -90171248 + AT_rich Low_complexity Low_complexity 1 21 0 7 1114 1580 262 98 50 chr3 69428561 69428959 -90170824 + L1M2 LINE L1 4533 4956 -1187 8 1114 588 65 0 0 chr3 69428959 69429036 -90170747 + (TC)n Simple_repeat Simple_repeat 2 78 0 8 1114 1580 262 98 50 chr3 69429036 69429051 -90170732 + L1M2 LINE L1 4957 4967 -1176 8 1114 306 87 0 0 chr3 69429051 69429097 -90170686 + (CA)n Simple_repeat Simple_repeat 2 47 0 8 1114 1580 265 92 48 chr3 69429097 69429540 -90170243 + L1M2 LINE L1 4968 5432 -724 8 1114 1105 88 7 0 chr3 69429548 69429695 -90170088 + B1_Mus1 SINE Alu 1 148 0 8 1114 927 301 36 7 chr3 69429844 69430152 -90169631 + L1MCa LINE L1 262 578 -5930 8 1114 568 168 88 9 chr3 69430265 69430379 -90169404 + B3A SINE B2 20 142 -56 8 1114 420 20 0 0 chr3 69430405 69430454 -90169329 + (CA)n Simple_repeat Simple_repeat 2 50 0 8 1114 1784 200 162 32 chr3 69430512 69430787 -90168996 - RMER19A LTR ERVK -11 726 445 8 1114 1917 141 36 181 chr3 69430787 69431307 -90168476 - RLTR41 LTR ERV1 0 446 2 8 1114 1784 204 155 31 chr3 69431307 69431601 -90168182 - RMER19A LTR ERVK -293 444 58 8 1114 260 253 0 88 chr3 69431866 69431904 -90167879 + MTEb LTR MaLR 294 324 -55 8 1114 1392 95 21 0 chr3 69431904 69432093 -90167690 - B2_Mm2 SINE B2 -1 194 2 8 1114 260 253 0 88 chr3 69432093 69432145 -90167638 + MTEb LTR MaLR 325 376 -3 8 1114 349 209 178 19 chr3 69432247 69432301 -90167482 - RMER12B LTR ERVK -132 1272 1201 8 1114 558 128 0 0 chr3 69432301 69432395 -90167388 + (CA)n Simple_repeat Simple_repeat 1 94 0 8 1114 1500 156 71 91 chr3 69432395 69432584 -90167199 - RLTR21 LTR ERVK -478 1094 926 8 1114 279 0 0 0 chr3 69432584 69432615 -90167168 + (CA)n Simple_repeat Simple_repeat 2 32 0 8 1114 1500 156 71 91 chr3 69432615 69432833 -90166950 - RLTR21 LTR ERVK -647 925 695 8 1114 397 132 53 0 chr3 69432813 69432889 -90166894 - B2_Mm1t SINE B2 -5 188 109 8 1114 408 121 0 0 chr3 69432889 69432924 -90166859 + (A)n Simple_repeat Simple_repeat 1 35 0 8 1114 1225 48 0 0 chr3 69432924 69433071 -90166712 + B1_Mm SINE Alu 1 147 0 8 1114 408 121 0 0 chr3 69433071 69433101 -90166682 + (A)n Simple_repeat Simple_repeat 1 30 0 8 1114 923 66 0 0 chr3 69433101 69433223 -90166560 - B2_Mm2 SINE B2 -72 123 2 8 1114 2852 155 135 55 chr3 69433223 69433896 -90165887 - RLTR21 LTR ERVK -841 731 5 8 1114 441 333 7 20 chr3 69433927 69434077 -90165706 + L1MCa LINE L1 614 761 -5747 8 1114 198 0 0 0 chr3 69434078 69434100 -90165683 + (TCTA)n Simple_repeat Simple_repeat 1 22 0 8 1114 449 203 62 111 chr3 69434106 69434333 -90165450 + L1M4 LINE L1 5210 5426 -758 8 1114 379 301 56 81 chr3 69434531 69434888 -90164895 + ORR1E LTR MaLR 17 365 -5 8 1114 239 244 58 0 chr3 69435373 69435459 -90164324 - MTE2b LTR MaLR -12 367 277 8 1114 465 66 0 0 chr3 69435809 69435870 -90163913 + (CCA)n Simple_repeat Simple_repeat 1 61 0 8 1114 509 316 43 20 chr3 69435919 69436174 -90163609 + L1MC4 LINE L1 6782 7042 -1000 8 1114 256 233 40 40 chr3 69436231 69436307 -90163476 + CT-rich Low_complexity Low_complexity 4 79 0 8 1114 2498 80 9 0 chr3 69436408 69436732 -90163051 - ORR1A2 LTR MaLR 0 327 1 8 1114 536 175 159 0 chr3 69437284 69437410 -90162373 + B1_Mus2 SINE Alu 2 147 0 8 1114 237 65 0 0 chr3 69437410 69437441 -90162342 + (A)n Simple_repeat Simple_repeat 1 31 0 8 1114 271 350 25 16 chr3 69438505 69438627 -90161156 - MER91A DNA Tip100 -57 139 17 8 1114 422 210 0 0 chr3 69439918 69439999 -90159784 + B1_Mus2 SINE Alu 9 89 -58 8 1114 215 170 21 0 chr3 69440084 69440131 -90159652 + GA-rich Low_complexity Low_complexity 2 49 0 8 1114 1262 83 27 27 chr3 69440340 69440525 -90159258 + B2_Mm2 SINE B2 2 186 -9 8 1114 273 72 367 20 chr3 69440676 69440774 -90159009 - B2_Mm2 SINE B2 0 195 64 8 1114 1218 127 6 0 chr3 69440813 69440994 -90158789 - B2_Mm2 SINE B2 -13 182 1 8 1114 414 194 10 30 chr3 69441191 69441292 -90158491 - Lx4B LINE L1 -4 7054 6956 8 1114 741 102 0 0 chr3 69441294 69441402 -90158381 + (TTTC)n Simple_repeat Simple_repeat 1 108 0 8 1114 1200 56 0 0 chr3 69441403 69441546 -90158237 - B1_Mus2 SINE Alu -3 144 2 8 1114 3314 11 0 5 chr3 69441861 69442230 -90157553 - IAPLTR1_Mm LTR ERVK 0 367 1 8 1114 53297 20 10 2 chr3 69442230 69448628 -90151155 - IAPEz-int LTR ERVK 0 6481 8 8 1114 3328 8 0 5 chr3 69448628 69448997 -90150786 - IAPLTR1_Mm LTR ERVK 0 367 1 8 1114 852 187 33 116 chr3 69449147 69449320 -90150463 + URR1A DNA MER1_type 5 161 -65 8 1114 1143 68 7 0 chr3 69449320 69449466 -90150317 - B1_Mus2 SINE Alu 0 147 1 8 1114 852 187 33 116 chr3 69449466 69449534 -90150249 + URR1A DNA MER1_type 162 226 0 8 1114 387 0 0 0 chr3 69449801 69449844 -90149939 + (TTTTA)n Simple_repeat Simple_repeat 4 46 0 8 1114 1192 68 0 0 chr3 69449849 69449996 -90149787 - B1_Mus2 SINE Alu 0 147 1 8 1114 365 308 80 37 chr3 69450407 69450493 -90149290 + RLTR18B LTR ERVK 9 96 -416 8 1114 201 74 0 0 chr3 69450493 69450520 -90149263 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 8 1114 365 308 80 37 chr3 69450520 69450595 -90149188 + RLTR18B LTR ERVK 97 177 -335 8 1114 709 291 86 47 chr3 69450605 69450974 -90148809 + RLTR18 LTR ERVK 111 607 -9 8 1114 1170 106 76 22 chr3 69451099 69451283 -90148500 + B2_Mm2 SINE B2 2 195 0 8 1114 1477 69 0 5 chr3 69453372 69453561 -90146222 - B2_Mm2 SINE B2 -7 188 1 8 1114 698 182 182 32 chr3 69454836 69455023 -90144760 - B3 SINE B2 -1 215 1 8 1114 294 299 50 30 chr3 69455034 69455134 -90144649 - MT2A LTR ERVL -355 178 77 8 1114 248 335 144 7 chr3 69455042 69455195 -90144588 - MTE2a LTR MaLR -201 178 5 8 1114 207 69 0 0 chr3 69455480 69455509 -90144274 + (TG)n Simple_repeat Simple_repeat 1 29 0 8 1114 306 0 0 0 chr3 69455509 69455542 -90144241 + (GA)n Simple_repeat Simple_repeat 1 34 0 8 1114 3362 87 2 4 chr3 69455659 69456147 -90143636 - RLTR1C LTR ERV1 -16 487 1 8 1114 17099 52 37 4 chr3 69456147 69458276 -90141507 - MMVL30-int LTR ERV1 0 3698 1501 8 1114 261 0 0 0 chr3 69458414 69458443 -90141340 + (TA)n Simple_repeat Simple_repeat 2 30 0 8 1114 532 156 114 165 chr3 69458538 69458792 -90140991 - MMVL30-int LTR ERV1 -2099 1200 960 8 1114 2526 131 20 8 chr3 69458879 69459270 -90140513 - MMERGLN-int LTR ERV1 -2245 1453 1058 8 1114 210 105 0 0 chr3 69459517 69459555 -90140228 + (CAGA)n Simple_repeat Simple_repeat 2 39 0 8 1114 457 308 0 27 chr3 69459592 69459739 -90140044 - MMERGLN-int LTR ERV1 -7023 533 391 8 1114 2671 132 5 30 chr3 69459743 69460172 -90139611 - MMERGLN-int LTR ERV1 -7138 418 1 8 1114 269 51 0 0 chr3 69460173 69460212 -90139571 - RLTR1D LTR ERV1 -566 39 1 8 1114 291 169 23 35 chr3 69460915 69461001 -90138782 + G-rich Low_complexity Low_complexity 4 88 0 8 1114 311 0 26 0 chr3 69461510 69461549 -90138234 + (TG)n Simple_repeat Simple_repeat 1 40 0 8 1114 233 29 0 29 chr3 69461849 69461884 -90137899 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 8 1114 2637 121 29 72 chr3 69462024 69462471 -90137312 - RLTR23 LTR ERV1 -2 428 1 8 1114 701 116 16 8 chr3 69462690 69462812 -90136971 - Lx LINE L1 -4 6650 6528 8 1114 243 0 0 0 chr3 69462981 69463008 -90136775 + (CA)n Simple_repeat Simple_repeat 1 27 0 8 1114 267 103 0 0 chr3 69463266 69463305 -90136478 + (CAA)n Simple_repeat Simple_repeat 1 39 0 8 1114 458 273 71 21 chr3 69463703 69463845 -90135938 + B3A SINE B2 45 193 -23 8 1114 258 102 143 0 chr3 69464135 69464184 -90135599 - RMER10B LTR ERVL 0 398 343 8 1114 28 29 0 0 chr3 69464345 69464380 -90135403 + AT_rich Low_complexity Low_complexity 1 35 0 8 1114 249 220 0 0 chr3 69464403 69464453 -90135330 - B2_Mm2 SINE B2 -97 98 49 8 1114 1223 119 11 0 chr3 69464478 69464655 -90135128 - B2_Mm1a SINE B2 -14 179 1 8 1114 1229 191 174 116 chr3 69465031 69465446 -90134337 + MT2A LTR ERVL 1 439 -94 8 1114 350 21 0 21 chr3 69465446 69465494 -90134289 + (TG)n Simple_repeat Simple_repeat 2 48 0 8 1114 551 298 0 13 chr3 69465532 69465685 -90134098 + ID_B1 SINE B4 6 156 -68 8 1114 218 333 35 53 chr3 69465619 69465733 -90134050 + B1F1 SINE Alu 10 121 -28 8 1114 2923 194 17 33 chr3 69466088 69466130 -90133653 + Lx5 LINE L1 6478 6513 -537 8 1114 1968 218 81 43 chr3 69466130 69466638 -90133145 - RLTR11A2 LTR ERVK 0 527 1 8 1114 2923 194 17 33 chr3 69466638 69467176 -90132607 + Lx5 LINE L1 6514 7049 -1 8 1115 268 267 0 0 chr3 69468228 69468288 -90131495 + MT2A LTR ERVL 93 152 -381 8 1115 239 245 0 0 chr3 69468281 69468330 -90131453 + MT2A LTR ERVL 301 349 -184 8 1115 1709 252 110 63 chr3 69468770 69469345 -90130438 - Lx8 LINE L1 -326 7147 6546 8 1115 617 233 78 16 chr3 69469350 69469542 -90130241 + RMER5 LTR ERV1 331 534 0 8 1115 230 310 83 83 chr3 69469730 69469839 -90129944 - RSINE1 SINE B4 -56 109 1 8 1115 786 264 147 9 chr3 69469854 69470411 -90129372 + Charlie2b DNA MER1_type 2146 2779 -3 8 1115 244 217 0 0 chr3 69470577 69470623 -90129160 - RLTR20A LTR ERVK 0 541 496 8 1115 1869 137 6 38 chr3 69470628 69470969 -90128814 - RLTR20A LTR ERVK -211 330 1 8 1115 225 247 147 21 chr3 69471463 69471558 -90128225 - MLT1J LTR MaLR -304 208 102 8 1115 508 285 149 11 chr3 69472159 69472340 -90127443 + B4A SINE B4 2 207 -85 8 1115 242 246 0 44 chr3 69472390 69472458 -90127325 + (CATATA)n Simple_repeat Simple_repeat 5 69 0 8 1115 231 282 220 8 chr3 69472685 69472803 -90126980 + RMER15 LTR ERVL 433 575 0 8 1115 185 0 40 0 chr3 69473399 69473424 -90126359 + (TG)n Simple_repeat Simple_repeat 1 26 0 8 1115 353 209 209 0 chr3 69473431 69473536 -90126247 - RSINE1 SINE B4 -31 134 8 8 1115 229 289 0 35 chr3 69473651 69473737 -90126046 + B4 SINE B4 2 84 -208 8 1115 623 282 60 81 chr3 69474164 69474596 -90125187 + BGLII_B LTR ERVK 1 423 -18 8 1115 362 197 25 62 chr3 69475225 69475306 -90124477 - B1F SINE Alu -3 146 69 8 1115 289 289 0 50 chr3 69475298 69475378 -90124405 + RSINE1 SINE B4 68 143 -22 8 1115 384 22 0 0 chr3 69475379 69475424 -90124359 + (CA)n Simple_repeat Simple_repeat 2 46 0 8 1115 609 40 0 0 chr3 69475426 69475502 -90124281 + (GA)n Simple_repeat Simple_repeat 1 76 0 8 1115 1025 42 132 0 chr3 69475555 69475699 -90124084 + B2_Mm2 SINE B2 1 163 -32 8 1115 1403 45 6 0 chr3 69475699 69475878 -90123905 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 8 1115 540 100 0 0 chr3 69475893 69475973 -90123810 + (GGAA)n Simple_repeat Simple_repeat 4 83 0 8 1115 958 251 63 60 chr3 69476322 69476687 -90123096 + ORR1D2 LTR MaLR 5 370 0 8 1115 246 259 35 0 chr3 69476751 69476809 -90122974 + G-rich Low_complexity Low_complexity 3 62 0 8 1115 1178 50 0 0 chr3 69477104 69477243 -90122540 + B1_Mus1 SINE Alu 1 139 -9 9 1115 279 0 0 0 chr3 69477243 69477274 -90122509 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 9 1115 1191 74 0 0 chr3 69477801 69477949 -90121834 + B1_Mus1 SINE Alu 1 148 0 9 1115 210 105 0 0 chr3 69477949 69477987 -90121796 + (A)n Simple_repeat Simple_repeat 1 38 0 9 1115 459 337 5 35 chr3 69478312 69478512 -90121271 - Lx8 LINE L1 -287 7186 6993 9 1115 469 226 78 9 chr3 69478540 69478656 -90121127 - B1_Mur1 SINE Alu -25 124 1 9 1115 301 306 46 0 chr3 69478749 69478857 -90120926 - HAL1b LINE L1 -637 1372 1260 9 1115 441 215 43 65 chr3 69478976 69479115 -90120668 - MLT1B LTR MaLR -38 370 228 9 1115 4421 97 42 64 chr3 69479328 69480096 -90119687 - RMER17A LTR ERVK 0 751 1 9 1115 336 362 88 16 chr3 69480156 69480406 -90119377 - B4 SINE B4 -23 269 2 9 1115 700 280 47 143 chr3 69480885 69481352 -90118431 - RLTR23 LTR ERV1 -3 427 6 9 1115 1246 75 29 6 chr3 69481429 69481602 -90118181 - B2_Mm2 SINE B2 -18 177 1 9 1115 510 31 0 0 chr3 69481812 69481876 -90117907 + (GA)n Simple_repeat Simple_repeat 1 64 0 9 1115 1751 189 30 63 chr3 69481918 69482313 -90117470 + ORR1C2 LTR MaLR 1 382 -2 9 1115 629 281 27 18 chr3 69482527 69482752 -90117031 + RLTR41 LTR ERV1 199 425 -21 9 1115 1043 285 45 16 chr3 69482770 69483084 -90116699 + ORR1E LTR MaLR 37 359 0 9 1115 2395 180 11 52 chr3 69483257 69483654 -90116129 + Lx4B LINE L1 6557 6936 -122 9 1115 297 0 0 0 chr3 69483654 69483687 -90116096 + (TG)n Simple_repeat Simple_repeat 2 34 0 9 1115 2395 180 11 52 chr3 69483687 69483810 -90115973 + Lx4B LINE L1 6937 7056 -2 9 1115 3925 32 4 0 chr3 69483913 69484409 -90115374 - RLTR1C LTR ERV1 0 503 6 9 1115 1500 157 259 22 chr3 69485480 69485851 -90113932 - RMER6B LTR ERVK -2 459 1 9 1115 238 121 59 29 chr3 69486463 69486531 -90113252 + (TA)n Simple_repeat Simple_repeat 1 70 0 9 1115 1059 127 72 0 chr3 69486607 69486773 -90113010 + B2_Mm1t SINE B2 3 180 -13 9 1115 311 147 11 0 chr3 69486790 69486853 -90112930 + B2_Mm2 SINE B2 50 116 -100 9 1115 1431 63 0 0 chr3 69486887 69487187 -90112596 + (GA)n Simple_repeat Simple_repeat 1 300 0 9 1115 1813 151 81 6 chr3 69487187 69487534 -90112249 + MTC LTR MaLR 47 419 -2 9 1115 366 23 0 0 chr3 69487892 69487935 -90111848 + (TG)n Simple_repeat Simple_repeat 2 44 0 9 1115 3087 180 110 44 chr3 69488198 69488954 -90110829 - RLTR40 LTR ERVK -11 806 1 9 1115 21 36 0 0 chr3 69489329 69489357 -90110426 + AT_rich Low_complexity Low_complexity 1 28 0 9 1115 432 154 141 0 chr3 69489389 69489467 -90110316 + 5S rRNA rRNA 2 90 -31 9 1115 557 232 134 21 chr3 69489894 69490088 -90109695 - ID_B1 SINE B4 -4 220 5 9 1115 305 249 10 63 chr3 69490337 69490443 -90109340 + MER57A-int LTR ERV1 5804 5893 -294 9 1115 225 65 0 0 chr3 69491529 69491560 -90108223 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 9 1115 609 83 0 0 chr3 69491572 69491656 -90108127 + (TTTC)n Simple_repeat Simple_repeat 3 86 0 9 1115 1206 287 3 3 chr3 69491657 69491951 -90107832 - RMER1B Other Other -740 326 33 9 1115 2135 187 68 18 chr3 69491952 69492454 -90107329 - RLTR11A2 LTR ERVK 0 527 1 9 1115 1465 94 0 0 chr3 69493057 69493249 -90106534 - B2_Mm2 SINE B2 -3 192 1 9 1115 553 299 126 62 chr3 69493312 69493702 -90106081 + MLT1B LTR MaLR 22 459 -8 9 1115 679 180 39 0 chr3 69494149 69494277 -90105506 - B1_Mus1 SINE Alu -15 133 1 9 1115 1581 197 19 48 chr3 69494637 69495016 -90104767 + ORR1B1 LTR MaLR 2 369 -9 9 1115 3150 46 5 69 chr3 69495121 69495544 -90104239 - MTA_Mm LTR MaLR 0 396 1 9 1115 6630 117 57 89 chr3 69495546 69497292 -90102491 + ORR1B1-int LTR MaLR 8 1963 0 9 1115 2551 108 47 15 chr3 69497370 69497776 -90102007 - BGLII LTR ERVK -2 419 1 9 1115 234 264 14 27 chr3 69498168 69498242 -90101541 + MLT1A1 LTR MaLR 320 392 -16 9 1115 570 309 26 54 chr3 69498290 69498598 -90101185 - Kanga11a DNA Tc2 -1002 743 321 9 1115 772 161 0 32 chr3 69499295 69499481 -90100302 + GA-rich Low_complexity Low_complexity 1 180 0 9 1115 3701 44 2 14 chr3 69499515 69500000 -90099783 + RLTR1C LTR ERV1 1 479 -24 9 1115 2324 170 5 92 chr3 69500024 69500608 -90099175 + MMVL30-int LTR ERV1 1 533 -7023 1 1115 264 77 0 0 chr3 69500644 69500683 -90099100 + (TCTG)n Simple_repeat Simple_repeat 2 40 0 2 1115 2753 82 62 8 chr3 69500936 69501598 -90098185 + MMVL30-int LTR ERV1 772 1469 -2229 1 1115 534 140 49 19 chr3 69501747 69501938 -90097845 + RLTR1B-int LTR ERV1 1020 1184 -2115 3 1115 369 0 0 0 chr3 69502045 69502086 -90097697 + (TA)n Simple_repeat Simple_repeat 1 41 0 4 1115 423 0 0 0 chr3 69502086 69502132 -90097651 + (GA)n Simple_repeat Simple_repeat 2 48 0 5 1115 350 88 0 0 chr3 69502275 69502332 -90097451 + RLTR1B-int LTR ERV1 1501 1557 -2141 3 1115 1966 53 0 8 chr3 69502332 69502581 -90097202 + RLTR1C LTR ERV1 257 503 0 6 1115 978 176 31 86 chr3 69502581 69502824 -90096959 - RMER10A LTR ERVL -37 405 178 7 1115 1354 87 5 16 chr3 69502824 69503011 -90096772 - B2_Mm1t SINE B2 -8 185 1 8 1115 978 176 31 86 chr3 69503011 69503022 -90096761 - RMER10A LTR ERVL -265 177 165 7 1115 350 105 17 17 chr3 69503521 69503579 -90096204 + HAL1-3A_ME LINE L1 1977 2034 -824 9 1115 446 115 23 0 chr3 69503579 69503666 -90096117 + (CAGAGA)n Simple_repeat Simple_repeat 6 94 0 1 1115 396 312 64 13 chr3 69504180 69504336 -90095447 - LTR48 LTR ERV1 -141 646 483 1 1115 303 320 64 53 chr3 69504375 69504563 -90095220 - LTR48 LTR ERV1 -454 190 1 1 1115 220 329 24 48 chr3 69504592 69504675 -90095108 - AmnSINE1 SINE SINE -489 86 6 1 1115 964 91 13 0 chr3 69504705 69504859 -90094924 + (TA)n Simple_repeat Simple_repeat 2 157 0 1 1115 480 318 97 87 chr3 69504961 69505375 -90094408 - L1MC4 LINE L1 -210 7832 7415 1 1115 930 234 9 14 chr3 69506236 69506453 -90093330 - B3 SINE B2 0 216 1 1 1115 375 301 0 0 chr3 69506587 69506670 -90093113 + RSINE1 SINE B4 3 85 -80 1 1115 803 262 9 45 chr3 69506851 69507075 -90092708 - B3 SINE B2 0 216 1 1 1115 369 287 61 0 chr3 69508248 69508363 -90091420 - MER63D DNA AcHobo -135 926 805 1 1115 809 248 19 19 chr3 69508415 69508629 -90091154 + B3 SINE B2 1 214 -2 1 1115 1008 74 7 0 chr3 69508653 69508788 -90090995 + B1_Mus1 SINE Alu 12 147 -1 2 1115 414 276 166 6 chr3 69509286 69509443 -90090340 + B3A SINE B2 1 182 -16 2 1115 897 162 0 13 chr3 69509479 69509629 -90090154 + B1_Mur4 SINE Alu 2 149 -1 2 1115 180 0 0 0 chr3 69509635 69509655 -90090128 + (CAA)n Simple_repeat Simple_repeat 2 21 0 2 1115 630 238 41 82 chr3 69509683 69509869 -90089914 + Lx8 LINE L1 6798 6981 -492 2 1115 3044 53 2 64 chr3 69509869 69510291 -90089492 - MTA_Mm LTR MaLR 0 396 1 2 1115 7968 80 11 2 chr3 69510291 69511379 -90088404 - MTA_Mm-int LTR MaLR 0 1098 1 2 1115 3062 67 13 3 chr3 69511379 69511769 -90088014 - MTA_Mm LTR MaLR 0 396 3 2 1115 630 238 41 82 chr3 69511769 69511823 -90087960 + Lx8 LINE L1 6982 7028 -445 2 1115 189 295 0 62 chr3 69512478 69512543 -90087240 - MIRb SINE MIR -15 253 193 2 1115 229 378 104 55 chr3 69513887 69514069 -90085714 + MLT1N2 LTR MaLR 162 352 -210 2 1115 453 341 12 18 chr3 69514093 69514263 -90085520 + MLT1N2 LTR MaLR 394 562 0 2 1115 197 83 0 27 chr3 69514326 69514363 -90085420 + (CAAAA)n Simple_repeat Simple_repeat 5 40 0 2 1115 470 280 0 120 chr3 69514633 69514737 -90085046 - ID_B1 SINE B4 0 224 136 2 1115 1079 126 80 11 chr3 69514737 69514913 -90084870 - B2_Mm1t SINE B2 -4 189 2 3 1115 470 280 0 120 chr3 69514913 69514958 -90084825 - ID_B1 SINE B4 -89 135 93 2 1115 312 267 111 63 chr3 69515594 69515846 -90083937 + L1MA4 LINE L1 5455 5718 -582 3 1115 1081 128 321 71 chr3 69515865 69516245 -90083538 + RMER6C LTR ERVK 1 475 -215 3 1115 1119 86 0 0 chr3 69517140 69517291 -90082492 + B2_Mm2 SINE B2 2 152 -43 3 1115 23 33 0 0 chr3 69517298 69517328 -90082455 + AT_rich Low_complexity Low_complexity 1 30 0 3 1115 249 33 0 0 chr3 69517534 69517564 -90082219 + (GA)n Simple_repeat Simple_repeat 1 30 0 3 1115 1247 90 11 6 chr3 69517642 69517820 -90081963 + B2_Mm1t SINE B2 1 179 -14 3 1115 266 83 607 46 chr3 69517901 69517990 -90081793 + B2_Mm2 SINE B2 48 186 -9 3 1115 324 0 0 0 chr3 69518119 69518155 -90081628 + (TG)n Simple_repeat Simple_repeat 1 36 0 3 1115 261 0 0 0 chr3 69518155 69518183 -90081600 + (GA)n Simple_repeat Simple_repeat 1 29 0 3 1115 1334 114 38 0 chr3 69518317 69518528 -90081255 + RMER6C LTR ERVK 472 690 0 3 1115 426 247 45 39 chr3 69518546 69518731 -90081052 + L1MA4 LINE L1 5727 5918 -382 3 1115 1544 174 95 23 chr3 69518863 69519211 -90080572 + ORR1D1 LTR MaLR 2 374 0 4 1115 4256 21 0 0 chr3 69519213 69519695 -90080088 + LTRIS_Mm LTR ERV1 1 482 0 4 1115 901 248 48 0 chr3 69519862 69520068 -90079715 + B3 SINE B2 1 216 0 4 1115 2630 51 45 0 chr3 69520105 69520436 -90079347 - ORR1A0 LTR MaLR 0 346 1 4 1115 666 232 0 48 chr3 69520692 69520837 -90078946 + B3 SINE B2 3 140 -76 4 1115 181 152 91 0 chr3 69521366 69521399 -90078384 - MIR SINE MIR -226 36 1 4 1115 555 16 0 0 chr3 69522214 69522278 -90077505 + (CAG)n Simple_repeat Simple_repeat 2 65 0 4 1115 3064 168 21 112 chr3 69522583 69522710 -90077073 - RMER1B Other Other -4 1062 941 4 1115 186 43 0 0 chr3 69522710 69522733 -90077050 + (CATA)n Simple_repeat Simple_repeat 2 24 0 4 1115 3064 168 21 112 chr3 69522733 69522780 -90077003 - RMER1B Other Other -126 940 927 4 1115 1182 81 0 0 chr3 69522780 69522928 -90076855 + B1_Mus1 SINE Alu 1 148 0 4 1115 3064 168 21 112 chr3 69522928 69523518 -90076265 - RMER1B Other Other -140 926 367 4 1115 1136 81 0 0 chr3 69523805 69523953 -90075830 - B1_Mus1 SINE Alu 0 148 1 5 1115 545 291 88 0 chr3 69524505 69524653 -90075130 - B3A SINE B2 -36 162 2 5 1115 483 174 12 0 chr3 69524661 69524747 -90075036 - B4A SINE B4 -205 87 1 5 1115 591 228 76 5 chr3 69524759 69524944 -90074839 - L1_Mur3 LINE L1 -1656 4224 4027 5 1115 560 271 7 41 chr3 69525041 69525187 -90074596 + B3A SINE B2 1 141 -57 5 1115 868 227 30 5 chr3 69525510 69525709 -90074074 - B3 SINE B2 -8 208 5 5 1115 368 220 56 118 chr3 69526746 69526890 -90072893 - B1F SINE Alu -3 146 12 5 1115 454 168 43 86 chr3 69527351 69527468 -90072315 - PB1D9 SINE Alu -8 112 1 5 1115 286 287 59 0 chr3 69527738 69527839 -90071944 - PB1D9 SINE Alu -9 111 5 5 1115 532 288 37 21 chr3 69527865 69528053 -90071730 - B3A SINE B2 -7 191 1 5 1115 201 208 62 0 chr3 69528994 69529042 -90070741 + MIR3 SINE MIR 113 163 -45 6 1115 744 181 63 35 chr3 69529286 69529429 -90070354 - B1_Mus2 SINE Alu 0 147 1 6 1115 522 217 195 13 chr3 69529687 69529841 -90069942 - B3A SINE B2 -15 183 2 6 1115 23 0 0 0 chr3 69529852 69529875 -90069908 + AT_rich Low_complexity Low_complexity 1 23 0 6 1115 548 242 113 8 chr3 69529893 69530026 -90069757 - RSINE1 SINE B4 -7 158 12 6 1115 243 269 49 37 chr3 69530509 69530590 -90069193 - ID4_ SINE ID -1 82 1 6 1115 760 249 124 0 chr3 69530698 69530875 -90068908 - B3 SINE B2 -10 206 8 6 1115 323 309 186 74 chr3 69531019 69531358 -90068425 - L2 LINE L2 -3041 378 2 6 1115 808 206 22 5 chr3 69532062 69532232 -90067551 - B3 SINE B2 -6 187 7 6 1115 2125 215 96 28 chr3 69532575 69533177 -90066606 - Lx6 LINE L1 -2 7458 6816 6 1115 527 203 70 63 chr3 69533549 69533691 -90066092 - B1_Mur1 SINE Alu 0 149 7 7 1115 253 279 11 75 chr3 69533615 69533708 -90066075 - MT2B LTR ERVL -361 240 154 7 1115 427 289 31 0 chr3 69533806 69533903 -90065880 - B1F1 SINE Alu -49 100 1 7 1115 527 293 43 7 chr3 69533903 69533983 -90065800 - B4A SINE B4 -207 85 1 7 1115 278 276 0 0 chr3 69534094 69534152 -90065631 + tRNA-Ala-GCY_ tRNA tRNA 3 60 -15 7 1115 4148 108 71 19 chr3 69534566 69535245 -90064538 - Lx LINE L1 0 6654 5941 7 1115 22 70 0 0 chr3 69535344 69535387 -90064396 + AT_rich Low_complexity Low_complexity 1 43 0 7 1115 927 41 0 251 chr3 69535707 69535902 -90063881 + B1_Mus2 SINE Alu 2 147 0 7 1115 21 71 0 0 chr3 69536561 69536603 -90063180 + AT_rich Low_complexity Low_complexity 1 42 0 7 1115 807 140 6 24 chr3 69537122 69537290 -90062493 + (TTTA)n Simple_repeat Simple_repeat 1 165 0 7 1115 1053 83 14 7 chr3 69537290 69537435 -90062348 - B1_Mus1 SINE Alu -2 146 1 8 1115 290 240 103 65 chr3 69537497 69537729 -90062054 - L1M5 LINE L1 -551 5628 5388 8 1115 592 211 36 18 chr3 69537840 69537951 -90061832 - B3 SINE B2 -10 206 94 8 1115 1031 182 153 35 chr3 69537948 69538176 -90061607 - RMER15 LTR ERVL -83 492 238 8 1115 720 250 133 125 chr3 69539437 69539812 -90059971 - MTE2a LTR MaLR 0 379 2 8 1115 295 289 70 48 chr3 69540229 69540381 -90059402 + RSINE1 SINE B4 2 154 -11 8 1115 279 0 0 0 chr3 69540382 69540413 -90059370 + (CA)n Simple_repeat Simple_repeat 1 31 0 8 1115 3035 198 235 40 chr3 69540413 69540984 -90058799 - RMER12B LTR ERVK 0 1404 720 8 1115 2311 78 15 58 chr3 69540984 69541326 -90058457 - ORR1A2 LTR MaLR 0 327 1 8 1115 3035 224 51 33 chr3 69541326 69542034 -90057749 - RMER12B LTR ERVK -685 719 2 8 1115 441 0 0 0 chr3 69542034 69542083 -90057700 + (CA)n Simple_repeat Simple_repeat 2 50 0 8 1115 306 206 49 123 chr3 69542534 69542656 -90057127 - MER2 DNA MER2_type -146 199 87 9 1115 371 257 43 26 chr3 69542838 69542954 -90056829 - PB1D9 SINE Alu -1 119 2 9 1115 1513 43 11 0 chr3 69543128 69543313 -90056470 - B2_Mm1a SINE B2 -6 187 1 9 1115 548 277 48 74 chr3 69544074 69544304 -90055479 - ID_B1 SINE B4 0 224 1 9 1115 255 306 0 0 chr3 69544526 69544588 -90055195 - ID4_ SINE ID -19 64 3 9 1115 1565 22 32 0 chr3 69544600 69544785 -90054998 - B2_Mm2 SINE B2 -3 192 2 9 1115 423 0 0 0 chr3 69545863 69545910 -90053873 + (CA)n Simple_repeat Simple_repeat 2 48 0 9 1115 544 206 136 8 chr3 69545948 69546080 -90053703 + B1_Mur1 SINE Alu 1 149 0 9 1115 180 0 0 0 chr3 69546513 69546533 -90053250 + (T)n Simple_repeat Simple_repeat 1 20 0 9 1115 1047 88 0 33 chr3 69546533 69546685 -90053098 - B1_Mus1 SINE Alu 0 148 2 9 1115 343 265 44 0 chr3 69546935 69547003 -90052780 - RSINE1 SINE B4 -92 73 3 1 1115 384 106 180 35 chr3 69547678 69547829 -90051954 - B2_Mm2 SINE B2 -4 191 3 1 1115 1120 110 37 0 chr3 69547849 69548013 -90051770 - B2_Mm1t SINE B2 -22 171 2 1 1115 823 237 46 0 chr3 69548216 69548389 -90051394 + B3A SINE B2 2 182 -16 1 1115 230 109 0 42 chr3 69548408 69548456 -90051327 + (CACG)n Simple_repeat Simple_repeat 2 47 0 1 1115 870 180 0 0 chr3 69548857 69549007 -90050776 - B1_Mur4 SINE Alu 0 150 1 1 1115 372 192 40 139 chr3 69549007 69549043 -90050740 - MT2B LTR ERVL -452 149 129 1 1115 506 280 38 8 chr3 69549317 69549450 -90050333 + ID_B1 SINE B4 84 220 -4 1 1115 821 211 59 25 chr3 69549987 69550191 -90049592 - B3 SINE B2 -5 211 1 1 1115 186 217 217 0 chr3 69550717 69550777 -90049006 + L3 LINE CR1 711 783 -3706 1 1115 207 260 0 0 chr3 69551171 69551221 -90048562 + (TG)n Simple_repeat Simple_repeat 1 50 0 1 1115 840 227 33 28 chr3 69551247 69551460 -90048323 - B3 SINE B2 0 216 3 1 1115 23 54 0 0 chr3 69551494 69551531 -90048252 + AT_rich Low_complexity Low_complexity 1 37 0 1 1115 378 0 0 0 chr3 69551578 69551620 -90048163 + (CA)n Simple_repeat Simple_repeat 2 43 0 1 1115 377 218 13 13 chr3 69551796 69551883 -90047900 + B3A SINE B2 2 88 -128 1 1115 246 62 0 0 chr3 69551954 69551986 -90047797 + (CA)n Simple_repeat Simple_repeat 1 32 0 1 1115 304 219 32 0 chr3 69554736 69554823 -90044960 - L1MC3 LINE L1 -26 7969 7904 1 1115 267 239 106 0 chr3 69555360 69555473 -90044310 - L1MC3 LINE L1 -472 7570 7446 1 1115 26 0 0 0 chr3 69555646 69555672 -90044111 + AT_rich Low_complexity Low_complexity 1 26 0 1 1115 1234 100 11 16 chr3 69555742 69555925 -90043858 - B2_Mm2 SINE B2 -12 183 2 1 1115 491 264 134 29 chr3 69556087 69556364 -90043419 - L1ME1 LINE L1 -195 5984 5679 1 1115 216 0 0 0 chr3 69556364 69556388 -90043395 + (T)n Simple_repeat Simple_repeat 1 24 0 1 1115 547 255 21 28 chr3 69556511 69556656 -90043127 - L1ME1 LINE L1 -542 5637 5494 1 1115 237 329 41 0 chr3 69556707 69556780 -90043003 - ID2 SINE ID -6 77 2 1 1115 327 190 90 15 chr3 69556785 69556895 -90042888 - L1ME1 LINE L1 -741 5437 5315 1 1115 503 201 156 31 chr3 69556886 69557153 -90042630 - Lx9 LINE L1 -5 7639 7315 1 1115 441 0 0 0 chr3 69557154 69557203 -90042580 + (TC)n Simple_repeat Simple_repeat 2 50 0 1 1115 592 197 120 8 chr3 69557824 69557957 -90041826 - B1_Mur1 SINE Alu 0 149 2 1 1115 251 293 36 0 chr3 69558363 69558447 -90041336 + ID4_ SINE ID 9 95 -57 1 1115 247 111 0 0 chr3 69558512 69558548 -90041235 - ID4 SINE ID -11 72 37 1 1115 373 287 260 17 chr3 69558565 69558979 -90040804 - L1MC3 LINE L1 -568 7217 6703 1 1115 284 309 112 1 chr3 69559249 69559395 -90040388 + MLT1E1A LTR MaLR 362 647 -33 1 1115 743 259 48 53 chr3 69559877 69560085 -90039698 + B3 SINE B2 10 216 0 1 1115 236 232 18 0 chr3 69560089 69560145 -90039638 + B4 SINE B4 79 135 -157 1 1115 246 250 194 0 chr3 69560175 69560247 -90039536 + RSINE1 SINE B4 3 88 -77 1 1115 243 319 221 19 chr3 69561702 69561910 -90037873 + MER20B DNA MER1_type 257 506 -277 1 1115 1060 83 0 40 chr3 69562144 69562294 -90037489 - B1_Mm SINE Alu -3 144 1 1 1115 471 18 0 0 chr3 69563511 69563567 -90036216 + (TG)n Simple_repeat Simple_repeat 1 56 0 1 1115 240 35 0 0 chr3 69563567 69563596 -90036187 + (GA)n Simple_repeat Simple_repeat 2 30 0 1 1115 861 258 91 12 chr3 69563597 69563840 -90035943 - B4 SINE B4 -30 262 1 1 1115 311 252 103 24 chr3 69564581 69564707 -90035076 - B1F1 SINE Alu -13 136 1 1 1115 592 149 33 50 chr3 69565619 69565739 -90034044 + PB1D9 SINE Alu 1 118 -2 1 1115 1796 164 50 3 chr3 69566128 69566488 -90033295 - RLTR14 LTR ERV1 -5 377 1 1 1115 766 228 91 53 chr3 69567226 69567434 -90032349 - B3 SINE B2 0 216 1 1 1115 537 243 9 0 chr3 69567696 69567807 -90031976 - PB1D9 SINE Alu -7 113 2 1 1115 417 39 0 0 chr3 69568835 69568886 -90030897 + (TG)n Simple_repeat Simple_repeat 1 51 0 1 1115 345 206 0 0 chr3 69568889 69568952 -90030831 - tRNA-Ala-GCY_ tRNA tRNA -10 65 3 1 1115 534 235 17 0 chr3 69569676 69569791 -90029992 - PB1D9 SINE Alu -2 118 2 1 1115 1346 161 27 5 chr3 69569885 69570104 -90029679 - URR1B DNA MER1_type -1 224 1 1 1115 1172 69 0 0 chr3 69570127 69570272 -90029511 + B1_Mm SINE Alu 1 145 -2 1 1115 519 147 7 4 chr3 69570310 69570401 -90029382 - B1_Mur2 SINE Alu -22 98 6 1 1115 1843 160 79 30 chr3 69570453 69570821 -90028962 - ORR1B1 LTR MaLR -8 386 1 1 1115 389 319 81 0 chr3 69571303 69571488 -90028295 - L1MB5 LINE L1 -182 5992 5793 1 1115 460 297 74 96 chr3 69572070 69572145 -90027638 + L1MD2 LINE L1 4860 4924 -1222 1 1115 549 44 0 0 chr3 69572145 69572213 -90027570 + (CAAG)n Simple_repeat Simple_repeat 1 68 0 1 1115 460 297 74 96 chr3 69572213 69572233 -90027550 + L1MD2 LINE L1 4925 4940 -1206 1 1115 1201 68 6 6 chr3 69572233 69572411 -90027372 + (CAAG)n Simple_repeat Simple_repeat 1 178 0 1 1115 460 297 74 96 chr3 69572411 69572440 -90027343 + L1MD2 LINE L1 4941 4962 -1184 1 1115 567 0 0 0 chr3 69572440 69572503 -90027280 + (CAAG)n Simple_repeat Simple_repeat 4 66 0 1 1115 460 297 74 96 chr3 69572503 69572574 -90027209 + L1MD2 LINE L1 4963 5027 -1119 1 1115 628 224 59 7 chr3 69572574 69572727 -90027056 + RSINE1 SINE B4 3 163 -2 1 1115 1200 294 92 45 chr3 69572727 69573566 -90026217 + L1MD2 LINE L1 5028 5939 -229 1 1115 245 225 12 0 chr3 69573567 69573647 -90026136 - L1M2 LINE L1 -3318 2825 2745 1 1115 5828 74 48 10 chr3 69574858 69576351 -90023432 - L1VL2 LINE L1 -1770 1845 303 1 1115 1220 75 0 6 chr3 69576355 69576369 -90023414 - B2_Mm2 SINE B2 -23 172 159 1 1115 180 0 0 0 chr3 69576369 69576389 -90023394 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 1 1115 1220 75 0 6 chr3 69576389 69576547 -90023236 - B2_Mm2 SINE B2 -37 158 1 1 1115 305 340 39 0 chr3 69576904 69577007 -90022776 + PB1D7 SINE Alu 6 112 -8 1 1115 446 277 0 35 chr3 69578704 69578820 -90020963 - PB1D7 SINE Alu -8 112 1 1 1115 189 0 0 0 chr3 69579003 69579024 -90020759 + (TTTTTG)n Simple_repeat Simple_repeat 4 24 0 1 1115 342 0 0 0 chr3 69579380 69579418 -90020365 + (TG)n Simple_repeat Simple_repeat 2 39 0 1 1115 201 74 0 0 chr3 69579704 69579731 -90020052 + (TCTG)n Simple_repeat Simple_repeat 2 28 0 1 1115 347 357 58 7 chr3 69579731 69579886 -90019897 - RSINE1 SINE B4 0 165 3 1 1115 571 279 58 6 chr3 69579909 69579920 -90019863 - B3A SINE B2 -6 192 182 1 1115 261 57 0 0 chr3 69579920 69579955 -90019828 + (TG)n Simple_repeat Simple_repeat 2 36 0 1 1115 571 279 58 6 chr3 69579955 69580116 -90019667 - B3A SINE B2 -17 181 11 1 1115 859 264 53 0 chr3 69580998 69581206 -90018577 + ID_B1 SINE B4 4 222 -2 1 1115 21 0 0 0 chr3 69581238 69581259 -90018524 + AT_rich Low_complexity Low_complexity 1 21 0 1 1115 879 134 24 6 chr3 69581586 69581751 -90018032 + Lx LINE L1 6486 6653 -1 1 1115 616 185 92 0 chr3 69582009 69582128 -90017655 + B3 SINE B2 1 130 -86 1 1115 1396 67 6 6 chr3 69582172 69582351 -90017432 + B2_Mm2 SINE B2 3 181 -14 1 1115 189 0 0 0 chr3 69582354 69582375 -90017408 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 1 1115 252 0 0 0 chr3 69582375 69582402 -90017381 + (CAA)n Simple_repeat Simple_repeat 3 30 0 1 1115 393 22 0 0 chr3 69582877 69582923 -90016860 + (TG)n Simple_repeat Simple_repeat 1 46 0 1 1115 186 43 0 0 chr3 69582925 69582948 -90016835 + (CA)n Simple_repeat Simple_repeat 2 24 0 1 1115 445 283 186 41 chr3 69582959 69583180 -90016603 - B4A SINE B4 -25 267 15 1 1115 181 191 149 0 chr3 69583568 69583615 -90016168 - L2a LINE L2 -72 3354 3301 1 1115 1491 158 63 58 chr3 69584226 69584341 -90015442 - ORR1D1 LTR MaLR -12 407 244 1 1115 207 0 0 0 chr3 69584341 69584364 -90015419 + (CAGG)n Simple_repeat Simple_repeat 4 26 0 1 1115 1491 177 61 72 chr3 69584364 69584618 -90015165 - ORR1D1 LTR MaLR -131 243 3 1 1115 513 269 23 15 chr3 69584620 69584752 -90015031 + B4A SINE B4 108 240 -52 1 1115 1071 278 102 8 chr3 69584764 69585127 -90014656 - MTD LTR MaLR -12 407 11 1 1115 495 87 0 0 chr3 69585161 69585230 -90014553 + (CA)n Simple_repeat Simple_repeat 2 70 0 1 1115 2264 114 12 0 chr3 69585509 69585834 -90013949 - ORR1A4 LTR MaLR 0 329 1 1 1115 246 287 96 29 chr3 69586051 69586155 -90013628 + PB1D7 SINE Alu 5 115 -5 1 1115 21 0 0 0 chr3 69586227 69586248 -90013535 + AT_rich Low_complexity Low_complexity 1 21 0 1 1115 396 0 0 0 chr3 69586256 69586300 -90013483 + (TCTA)n Simple_repeat Simple_repeat 2 45 0 1 1115 315 65 0 0 chr3 69586583 69586629 -90013154 + (TG)n Simple_repeat Simple_repeat 1 46 0 1 1115 342 0 0 0 chr3 69586629 69586666 -90013117 + (GA)n Simple_repeat Simple_repeat 1 38 0 1 1115 646 311 106 12 chr3 69586667 69586921 -90012862 - B4 SINE B4 -6 286 9 1 1115 529 228 24 36 chr3 69587201 69587369 -90012414 - RLTR23 LTR ERV1 0 430 265 1 1115 495 0 0 0 chr3 69587567 69587622 -90012161 + (TC)n Simple_repeat Simple_repeat 2 56 0 1 1115 297 0 0 0 chr3 69587622 69587654 -90012129 + (TG)n Simple_repeat Simple_repeat 2 34 0 1 1115 309 145 0 16 chr3 69588022 69588085 -90011698 - MLT1D LTR MaLR -9 496 435 1 1115 473 272 13 16 chr3 69588482 69588637 -90011146 - MLT1A0 LTR MaLR -5 462 241 1 1115 442 163 80 20 chr3 69589023 69589123 -90010660 + PB1D10 SINE Alu 10 115 -2 1 1115 771 244 35 15 chr3 69589125 69589325 -90010458 + B3A SINE B2 2 205 -11 1 1115 198 0 0 0 chr3 69589381 69589403 -90010380 + (CAAAA)n Simple_repeat Simple_repeat 4 25 0 1 1115 419 246 193 0 chr3 69589642 69589756 -90010027 - B3A SINE B2 -57 141 6 1 1115 2438 201 27 104 chr3 69589779 69590441 -90009342 - RMER19C LTR ERVK 0 611 1 1 1115 189 0 0 0 chr3 69590910 69590931 -90008852 + (C)n Simple_repeat Simple_repeat 1 21 0 1 1115 380 302 76 0 chr3 69592449 69592568 -90007215 - RSINE1 SINE B4 -24 141 14 2 1115 1192 65 0 101 chr3 69592891 69593079 -90006704 - L1_Mus2 LINE L1 -1 6565 6397 2 1115 977 176 57 57 chr3 69593142 69593353 -90006430 + B3 SINE B2 2 212 -4 2 1115 595 264 20 49 chr3 69594929 69595132 -90004651 - B3A SINE B2 -1 197 1 2 1115 712 205 112 77 chr3 69595452 69595621 -90004162 + B3 SINE B2 3 177 -18 2 1115 375 23 0 0 chr3 69595639 69595683 -90004100 + (TG)n Simple_repeat Simple_repeat 2 45 0 2 1115 229 222 44 0 chr3 69595683 69595728 -90004055 - ID2 SINE ID -16 67 21 2 1115 1318 227 105 50 chr3 69595910 69596101 -90003682 + MTD LTR MaLR 19 210 -209 2 1115 782 208 95 15 chr3 69596101 69596301 -90003482 + B3 SINE B2 1 216 0 2 1115 1318 227 105 50 chr3 69596301 69596489 -90003294 + MTD LTR MaLR 211 419 0 2 1115 391 313 0 0 chr3 69596695 69596794 -90002989 - RSINE1 SINE B4 -2 163 65 2 1115 822 278 73 47 chr3 69597471 69597889 -90001894 - RMER15 LTR ERVL -16 559 39 2 1115 210 306 23 23 chr3 69598006 69598093 -90001690 + MIR SINE MIR 35 121 -141 2 1115 1175 69 0 0 chr3 69598447 69598592 -90001191 + B1_Mus2 SINE Alu 2 146 -1 2 1115 321 120 42 25 chr3 69598592 69598712 -90001071 + A-rich Low_complexity Low_complexity 1 122 0 2 1116 361 169 0 24 chr3 69599745 69599830 -89999953 + CT-rich Low_complexity Low_complexity 3 85 0 2 1116 22 0 0 0 chr3 69601463 69601485 -89998298 + AT_rich Low_complexity Low_complexity 1 22 0 2 1116 996 22 7 29 chr3 69602759 69602899 -89996884 - L1Md_F3 LINE L1 0 6584 6448 2 1116 183 157 19 56 chr3 69603312 69603366 -89996417 - MIRm SINE MIR -138 138 87 2 1116 595 82 41 0 chr3 69603631 69603728 -89996055 + (TTTTC)n Simple_repeat Simple_repeat 3 103 0 2 1116 1107 70 14 0 chr3 69603728 69603871 -89995912 - B1_Mm SINE Alu 0 147 3 2 1116 2827 281 30 44 chr3 69603878 69604840 -89994943 + RCHARR1 DNA MER1_type 3 951 -23 2 1116 476 206 85 55 chr3 69605173 69605337 -89994446 - Lx8 LINE L1 -1195 6278 6110 2 1116 2238 120 8 26 chr3 69605423 69605800 -89993983 + Lx LINE L1 6285 6654 0 2 1116 7681 103 31 7 chr3 69605825 69606955 -89992828 - Lx3B LINE L1 0 6973 5817 2 1116 218 162 40 13 chr3 69607590 69607665 -89992118 + (CATATA)n Simple_repeat Simple_repeat 2 78 0 2 1116 430 226 53 12 chr3 69607731 69607868 -89991915 - B3A SINE B2 -33 162 12 2 1116 451 260 14 142 chr3 69608248 69608396 -89991387 + RSINE1 SINE B4 4 132 -33 2 1116 514 213 27 81 chr3 69609015 69609163 -89990620 + RLTR20A2 LTR ERVK 423 562 -16 2 1116 3715 79 9 32 chr3 69609691 69610225 -89989558 + L1_Mus3 LINE L1 6117 6638 0 2 1116 2977 108 20 16 chr3 69610256 69610708 -89989075 + Lx4A LINE L1 6603 7056 -2 2 1116 818 146 50 55 chr3 69611055 69611236 -89988547 + ORR1D1 LTR MaLR 1 180 -194 2 1116 793 192 35 11 chr3 69611419 69611593 -89988190 + ORR1D1 LTR MaLR 197 374 0 2 1116 2266 168 44 12 chr3 69611976 69612381 -89987402 - MTC LTR MaLR 0 421 4 2 1116 2069 277 63 24 chr3 69613009 69613021 -89986762 - Lx5 LINE L1 -7 7043 7034 2 1116 825 113 20 0 chr3 69613021 69613171 -89986612 + (TCTA)n Simple_repeat Simple_repeat 4 156 0 2 1116 2069 277 63 24 chr3 69613171 69613749 -89986034 - Lx5 LINE L1 -17 7033 6430 2 1116 444 118 0 0 chr3 69613901 69613969 -89985814 + (TA)n Simple_repeat Simple_repeat 2 69 0 2 1116 744 74 0 0 chr3 69614001 69614109 -89985674 + (TC)n Simple_repeat Simple_repeat 1 108 0 2 1116 445 204 262 47 chr3 69614124 69614368 -89985415 - Lx8 LINE L1 -326 7147 6851 2 1116 2430 163 49 2 chr3 69614516 69614946 -89984837 - L1_Mur3 LINE L1 -187 5693 5244 2 1116 3127 270 61 95 chr3 69614944 69616344 -89983439 + Lx4B LINE L1 5711 7680 -16 2 1116 2298 62 7 0 chr3 69616666 69616957 -89982826 + L1_Mus3 LINE L1 6339 6631 -7 2 1116 3390 25 8 5 chr3 69617691 69618086 -89981697 - MTA_Mm LTR MaLR 0 396 1 2 1116 405 277 64 21 chr3 69618879 69619019 -89980764 - RSINE1 SINE B4 -8 157 12 2 1116 226 300 0 0 chr3 69619538 69619588 -89980195 - ID_B1 SINE B4 -88 136 87 2 1116 214 289 0 0 chr3 69619548 69619593 -89980190 - B1F1 SINE Alu -104 45 1 2 1116 243 125 0 0 chr3 69619599 69619639 -89980144 + (TG)n Simple_repeat Simple_repeat 1 40 0 2 1116 1059 112 0 0 chr3 69619697 69619840 -89979943 - B1_Mur3 SINE Alu -6 143 1 2 1116 1249 271 92 30 chr3 69620293 69620791 -89978992 + RMER5 LTR ERV1 1 529 -5 2 1116 216 0 0 0 chr3 69621406 69621430 -89978353 + (TA)n Simple_repeat Simple_repeat 2 25 0 2 1116 667 293 36 62 chr3 69622134 69622440 -89977343 + RLTR26 LTR ERVK 120 417 -225 2 1116 287 154 58 0 chr3 69622654 69622706 -89977077 - MERVK26-int LTR ERVK -2806 4113 4059 2 1116 716 116 33 8 chr3 69622712 69622834 -89976949 - L1_Mus3 LINE L1 -461 6177 6053 2 1116 1173 74 0 0 chr3 69622841 69622989 -89976794 - B1_Mus1 SINE Alu 0 148 1 2 1116 1293 302 11 0 chr3 69622990 69623341 -89976442 + MTEb LTR MaLR 15 369 -10 2 1116 5107 115 38 40 chr3 69625269 69626245 -89973538 - Lx2 LINE L1 -913 6084 5097 2 1116 1388 51 79 0 chr3 69626245 69626261 -89973522 - B2_Mm1t SINE B2 -2 191 176 2 1116 387 0 0 0 chr3 69626261 69626304 -89973479 + (TTTA)n Simple_repeat Simple_repeat 3 45 0 2 1116 1388 51 79 0 chr3 69626304 69626464 -89973319 - B2_Mm1t SINE B2 -18 175 2 2 1116 5107 149 8 14 chr3 69626464 69626557 -89973226 - Lx2 LINE L1 -781 5096 5013 2 1116 5283 124 19 7 chr3 69626558 69627383 -89972400 + Lx2 LINE L1 6093 6927 -70 2 1116 360 0 0 0 chr3 69627430 69627470 -89972313 + (CA)n Simple_repeat Simple_repeat 2 41 0 2 1116 410 293 32 8 chr3 69627538 69627662 -89972121 - Tigger5 DNA MER2_type -2217 189 63 2 1116 333 380 53 10 chr3 69627746 69627953 -89971830 + MER68 LTR ERVL 348 563 0 2 1116 466 258 81 38 chr3 69627986 69628171 -89971612 + MLT1A1 LTR MaLR 213 405 -3 2 1116 2746 238 62 17 chr3 69628187 69628673 -89971110 + L1_Mur3 LINE L1 3894 4391 -1489 2 1116 360 0 0 0 chr3 69628673 69628713 -89971070 + (GA)n Simple_repeat Simple_repeat 1 40 0 2 1116 2746 238 62 17 chr3 69628713 69629051 -89970732 + L1_Mur3 LINE L1 4392 4755 -1125 2 1116 212 310 0 131 chr3 69629153 69629283 -89970500 - PB1D9 SINE Alu -7 113 1 2 1116 401 279 55 59 chr3 69629283 69629359 -89970424 - B4A SINE B4 -221 71 2 2 1116 259 289 40 0 chr3 69629366 69629442 -89970341 - MLT1A1 LTR MaLR -329 79 1 2 1116 791 230 27 33 chr3 69630812 69630996 -89968787 - B3A SINE B2 -15 183 1 2 1116 351 0 0 0 chr3 69631314 69631353 -89968430 + (GA)n Simple_repeat Simple_repeat 1 39 0 2 1116 579 199 0 0 chr3 69631703 69631950 -89967833 + (CA)n Simple_repeat Simple_repeat 1 247 0 2 1116 263 32 0 0 chr3 69631950 69631981 -89967802 + (CAGA)n Simple_repeat Simple_repeat 3 33 0 2 1116 323 123 18 0 chr3 69631981 69632038 -89967745 + HAL1-3A_ME LINE L1 1976 2033 -825 2 1116 1041 270 15 4 chr3 69632040 69632304 -89967479 - B4A SINE B4 -25 267 1 2 1116 24 0 0 0 chr3 69632507 69632531 -89967252 + AT_rich Low_complexity Low_complexity 1 24 0 2 1116 619 277 123 4 chr3 69632598 69632834 -89966949 + MLT1A0 LTR MaLR 88 351 -14 2 1116 1325 125 5 0 chr3 69633134 69633326 -89966457 + B2_Mm1a SINE B2 1 193 0 2 1116 369 0 0 0 chr3 69634047 69634088 -89965695 + (TG)n Simple_repeat Simple_repeat 1 41 0 2 1116 561 80 0 0 chr3 69634088 69634176 -89965607 + (GA)n Simple_repeat Simple_repeat 2 89 0 2 1116 1016 297 79 54 chr3 69634389 69634659 -89965124 + L1MC3 LINE L1 7176 7456 -329 2 1116 432 51 0 0 chr3 69634659 69634718 -89965065 + (CATA)n Simple_repeat Simple_repeat 4 62 0 2 1116 1016 297 79 54 chr3 69634718 69635042 -89964741 + L1MC3 LINE L1 7457 7785 0 2 1116 1011 218 24 9 chr3 69635104 69635317 -89964466 - B3 SINE B2 0 216 1 2 1116 280 245 128 0 chr3 69635348 69635442 -89964341 - PB1D10 SINE Alu -5 112 7 2 1116 324 0 0 0 chr3 69635668 69635704 -89964079 + (TGAA)n Simple_repeat Simple_repeat 1 36 0 2 1116 34 0 0 0 chr3 69635848 69635882 -89963901 + AT_rich Low_complexity Low_complexity 1 34 0 2 1116 603 274 147 21 chr3 69635883 69636073 -89963710 - ID_B1 SINE B4 -5 219 6 2 1116 414 0 0 0 chr3 69637049 69637095 -89962688 + (CA)n Simple_repeat Simple_repeat 2 47 0 2 1116 244 310 10 20 chr3 69637296 69637398 -89962385 + CT-rich Low_complexity Low_complexity 2 102 0 2 1116 877 289 86 4 chr3 69637861 69638128 -89961655 - B4A SINE B4 -2 290 2 2 1116 360 0 0 0 chr3 69639547 69639587 -89960196 + (TG)n Simple_repeat Simple_repeat 1 40 0 2 1116 298 107 18 18 chr3 69639587 69639644 -89960139 + (GA)n Simple_repeat Simple_repeat 2 58 0 2 1116 468 51 0 0 chr3 69639792 69639851 -89959932 + (TG)n Simple_repeat Simple_repeat 2 60 0 2 1116 327 25 0 0 chr3 69639923 69639963 -89959820 + (TTTTG)n Simple_repeat Simple_repeat 2 41 0 2 1116 1052 88 0 0 chr3 69639963 69640099 -89959684 - B1_Mus2 SINE Alu -10 137 2 2 1116 219 375 19 0 chr3 69642046 69642150 -89957633 + MIR3 SINE MIR 82 187 -21 2 1116 3415 117 4 8 chr3 69642547 69643056 -89956727 + Lx3C LINE L1 6468 6974 -2 2 1116 198 0 0 0 chr3 69643577 69643599 -89956184 + (GGGA)n Simple_repeat Simple_repeat 1 22 0 2 1116 257 254 143 0 chr3 69643622 69643685 -89956098 + ID_B1 SINE B4 86 157 -67 2 1116 979 186 108 0 chr3 69643876 69644080 -89955703 - URR1A DNA MER1_type 0 226 1 2 1116 290 26 26 0 chr3 69644319 69644358 -89955425 + (CAGG)n Simple_repeat Simple_repeat 1 40 0 2 1116 443 204 93 85 chr3 69644627 69644745 -89955038 + B1_Mur1 SINE Alu 1 119 -30 2 1116 911 124 0 0 chr3 69644746 69644875 -89954908 - B1_Mus2 SINE Alu -15 132 4 2 1116 252 0 0 0 chr3 69645699 69645727 -89954056 + (CA)n Simple_repeat Simple_repeat 2 29 0 3 1116 280 233 111 3 chr3 69646016 69646098 -89953685 - PB1D7 SINE Alu -20 97 12 3 1116 1503 192 119 42 chr3 69646302 69646688 -89953095 + MTD LTR MaLR 1 416 -3 3 1116 247 243 113 14 chr3 69646966 69647037 -89952746 - ID2 SINE ID 0 83 6 3 1116 456 35 0 0 chr3 69647322 69647380 -89952403 + (TG)n Simple_repeat Simple_repeat 2 59 0 3 1116 502 278 8 0 chr3 69647389 69647515 -89952268 - RSINE1 SINE B4 -36 129 3 3 1116 37 23 0 0 chr3 69648352 69648396 -89951387 + AT_rich Low_complexity Low_complexity 1 44 0 3 1116 204 40 0 0 chr3 69648525 69648550 -89951233 + (TCTG)n Simple_repeat Simple_repeat 1 25 0 3 1116 1344 63 0 0 chr3 69648553 69648728 -89951055 + (TCCA)n Simple_repeat Simple_repeat 2 176 0 3 1116 261 228 0 0 chr3 69649061 69649140 -89950643 + (CA)n Simple_repeat Simple_repeat 2 80 0 3 1116 507 249 208 19 chr3 69649819 69650033 -89949750 + Lx8 LINE L1 7213 7467 -6 3 1116 182 305 61 61 chr3 69650425 69650589 -89949194 + L2a LINE L2 3259 3422 -4 3 1116 409 275 9 18 chr3 69650642 69650753 -89949030 + PB1D10 SINE Alu 1 110 -7 3 1116 834 265 19 93 chr3 69650858 69651170 -89948613 + B4 SINE B4 4 292 0 3 1116 182 136 23 0 chr3 69651193 69651237 -89948546 + (CA)n Simple_repeat Simple_repeat 2 46 0 3 1116 2447 168 62 39 chr3 69651300 69651784 -89947999 + Lx5 LINE L1 6027 6521 -529 3 1116 554 273 15 107 chr3 69651792 69651989 -89947794 + B4 SINE B4 51 229 -63 3 1116 1383 248 26 7 chr3 69651989 69652298 -89947485 + Lx5 LINE L1 6536 6850 -200 3 1116 4485 8 2 12 chr3 69652301 69652799 -89946984 + MT2_Mm LTR ERVL 1 493 0 3 1116 41386 16 14 0 chr3 69652799 69658086 -89941697 + MERVL-int LTR ERVL 1 5360 -125 3 1116 344 179 46 35 chr3 69658086 69658173 -89941610 + ORR1A3-int LTR MaLR 553 640 -1323 3 1116 321 0 0 0 chr3 69658173 69658211 -89941572 + MERVL-int LTR ERVL 5448 5485 0 3 1116 4485 8 2 12 chr3 69658211 69658709 -89941074 + MT2_Mm LTR ERVL 1 493 0 3 1116 832 251 43 5 chr3 69658714 69658902 -89940881 + Lx5 LINE L1 6851 7045 -5 3 1116 269 356 17 17 chr3 69659861 69659978 -89939805 - PB1D10 SINE Alu 0 117 1 3 1116 1210 257 142 53 chr3 69659990 69660595 -89939188 - L1MB8 LINE L1 -1 6177 5519 3 1116 381 198 0 0 chr3 69660605 69660686 -89939097 + CT-rich Low_complexity Low_complexity 1 81 0 3 1116 578 197 161 0 chr3 69660826 69660997 -89938786 - L1MB8 LINE L1 -692 5482 5282 3 1116 342 340 67 85 chr3 69661063 69661391 -89938392 - L1M4b LINE L1 -6929 405 84 3 1116 416 51 0 17 chr3 69661475 69661535 -89938248 + (TG)n Simple_repeat Simple_repeat 2 60 0 3 1116 744 291 59 18 chr3 69661542 69661815 -89937968 - B4A SINE B4 -8 284 1 3 1116 351 0 0 0 chr3 69661832 69661871 -89937912 + (CA)n Simple_repeat Simple_repeat 2 40 0 3 1116 212 156 44 0 chr3 69662040 69662085 -89937698 + (TTTAA)n Simple_repeat Simple_repeat 4 50 0 3 1116 1076 200 51 9 chr3 69662149 69662366 -89937417 + URR1A DNA MER1_type 1 226 0 3 1116 3235 53 2 12 chr3 69662598 69662998 -89936785 - MTA_Mm LTR MaLR 0 396 1 3 1116 240 302 0 0 chr3 69664398 69664461 -89935322 + G-rich Low_complexity Low_complexity 1 63 0 3 1116 1871 113 177 37 chr3 69666088 69666342 -89933441 + Lx3C LINE L1 6503 6761 -215 3 1116 342 0 0 0 chr3 69666342 69666380 -89933403 + (TA)n Simple_repeat Simple_repeat 2 39 0 3 1116 372 22 0 0 chr3 69666380 69666424 -89933359 + (TG)n Simple_repeat Simple_repeat 2 46 0 3 1116 1871 113 177 37 chr3 69666424 69666574 -89933209 + Lx3C LINE L1 6762 6964 -12 3 1116 545 262 8 23 chr3 69666697 69666826 -89932957 + ID_B1 SINE B4 78 204 -20 3 1116 338 271 42 0 chr3 69667037 69667133 -89932650 - PB1D10 SINE Alu -14 103 4 3 1116 583 264 25 19 chr3 69668400 69668562 -89931221 - RSINE1 SINE B4 -1 164 2 3 1116 7083 62 0 13 chr3 69668643 69669537 -89930246 + L1_Mus2 LINE L1 5685 6566 0 3 1116 279 167 0 0 chr3 69670018 69670072 -89929711 + A-rich Low_complexity Low_complexity 1 54 0 3 1116 245 180 20 20 chr3 69670086 69670137 -89929646 - L1MC4a LINE L1 -230 7652 7602 3 1116 615 297 152 46 chr3 69670154 69670623 -89929160 - L1MB7 LINE L1 -153 6031 5503 3 1116 2254 138 60 6 chr3 69670623 69670987 -89928796 + ORR1C2 LTR MaLR 1 384 0 3 1116 1464 279 143 25 chr3 69670987 69671917 -89927866 - L1MB7 LINE L1 -682 5502 4477 3 1116 2591 53 0 0 chr3 69671917 69672236 -89927547 + L1_Mus1 LINE L1 6245 6563 -4 3 1116 585 204 78 67 chr3 69672265 69672444 -89927339 + RMER15-int LTR ERVL 1449 1629 -3370 3 1116 312 313 47 57 chr3 69672489 69672682 -89927101 + Charlie12 DNA MER1_type 402 592 -2281 3 1116 442 322 52 52 chr3 69672737 69673028 -89926755 - B4 SINE B4 0 292 2 3 1116 25 31 0 0 chr3 69676001 69676033 -89923750 + AT_rich Low_complexity Low_complexity 1 32 0 3 1116 314 310 0 10 chr3 69676033 69676134 -89923649 - ID_B1 SINE B4 -3 221 122 3 1116 758 162 7 47 chr3 69676148 69676297 -89923486 - B1_Mus1 SINE Alu 0 148 6 3 1116 366 176 42 100 chr3 69676196 69676316 -89923467 - MT2B LTR ERVL -338 263 151 3 1116 693 177 49 53 chr3 69676596 69676780 -89923003 - ORR1C1 LTR MaLR -199 195 5 3 1116 3886 169 178 6 chr3 69676781 69677697 -89922086 - ORR1C1-int LTR MaLR 0 1509 436 3 1116 497 68 27 0 chr3 69677820 69677893 -89921890 + (TATG)n Simple_repeat Simple_repeat 1 75 0 3 1116 463 222 128 0 chr3 69677916 69678033 -89921750 - RSINE1 SINE B4 -23 142 11 3 1116 197 281 673 10 chr3 69678848 69678958 -89920825 + MER5A DNA MER1_type 3 185 -4 3 1116 1031 129 91 38 chr3 69679055 69679264 -89920519 + URR1B DNA MER1_type 1 220 -5 3 1116 1269 232 82 73 chr3 69680164 69680698 -89919085 - MT2B LTR ERVL 0 601 5 3 1116 237 237 0 0 chr3 69680771 69680830 -89918953 + ID4 SINE ID 12 70 -13 3 1116 2454 163 89 17 chr3 69681002 69681465 -89918318 + RLTR19 LTR ERVK 1 496 -3 3 1116 802 250 60 5 chr3 69681821 69682006 -89917777 - B3 SINE B2 -21 195 1 3 1116 813 170 14 7 chr3 69682121 69682269 -89917514 - B1_Mur2 SINE Alu 0 149 1 3 1116 547 295 97 31 chr3 69682443 69682512 -89917271 - B4 SINE B4 -2 290 213 3 1116 387 0 0 0 chr3 69682512 69682555 -89917228 + (CAA)n Simple_repeat Simple_repeat 2 44 0 3 1116 547 295 97 31 chr3 69682555 69682712 -89917071 - B4 SINE B4 -80 212 49 3 1116 312 306 73 57 chr3 69682765 69683066 -89916717 - L1ME2 LINE L1 -128 6036 5731 3 1116 197 299 30 0 chr3 69683092 69683159 -89916624 - MIRc SINE MIR -89 179 111 3 1116 5245 70 9 43 chr3 69684459 69685195 -89914588 - L1_Mus2 LINE L1 0 6566 5856 3 1116 328 297 10 29 chr3 69685725 69685829 -89913954 - RSINE1 SINE B4 0 165 64 3 1116 438 252 29 29 chr3 69686039 69686141 -89913642 + PB1D10 SINE Alu 6 107 -10 3 1116 256 308 26 0 chr3 69687660 69687738 -89912045 + ID SINE ID 2 81 -143 3 1116 234 0 0 0 chr3 69688063 69688089 -89911694 + (A)n Simple_repeat Simple_repeat 1 26 0 3 1116 507 33 0 0 chr3 69690506 69690567 -89909216 + (TG)n Simple_repeat Simple_repeat 1 61 0 3 1116 418 278 77 142 chr3 69690838 69690888 -89908895 + RMER10A LTR ERVL 18 57 -385 3 1116 1403 81 11 0 chr3 69690888 69691073 -89908710 + B2_Mm1a SINE B2 2 188 -5 3 1116 418 278 77 142 chr3 69691073 69691450 -89908333 + RMER10A LTR ERVL 58 417 -25 3 1116 1890 169 63 40 chr3 69691481 69691911 -89907872 - RMER10A LTR ERVL -2 440 1 3 1116 740 156 16 0 chr3 69691942 69692064 -89907719 + B1_Mur4 SINE Alu 3 126 -24 3 1116 762 93 0 0 chr3 69692649 69692757 -89907026 + (TC)n Simple_repeat Simple_repeat 2 109 0 3 1116 265 250 68 0 chr3 69693089 69693177 -89906606 + PB1 SINE Alu 32 125 -2 3 1116 760 245 58 10 chr3 69693416 69693622 -89906161 + B3 SINE B2 1 216 0 3 1116 403 267 0 19 chr3 69694032 69694139 -89905644 - B3 SINE B2 -89 127 23 3 1116 441 0 0 0 chr3 69694255 69694304 -89905479 + (TG)n Simple_repeat Simple_repeat 1 49 0 3 1116 253 316 17 26 chr3 69695631 69695748 -89904035 + MER57A-int LTR ERV1 5795 5910 -277 3 1116 24 0 0 0 chr3 69696029 69696053 -89903730 + AT_rich Low_complexity Low_complexity 1 24 0 3 1116 442 293 111 5 chr3 69696906 69697105 -89902678 + MLT1A1 LTR MaLR 2 221 -187 3 1116 666 274 73 10 chr3 69697122 69697314 -89902469 - ID_B1 SINE B4 -9 215 12 3 1116 557 267 40 12 chr3 69697333 69697527 -89902256 + MLT1A1 LTR MaLR 161 405 -3 3 1116 308 207 0 0 chr3 69697737 69697795 -89901988 - L1_Rod LINE L1 -22 5825 5768 3 1116 693 188 8 0 chr3 69698681 69698814 -89900969 + B1_Mur4 SINE Alu 6 139 -11 3 1116 309 68 0 0 chr3 69698814 69698858 -89900925 + (CCAA)n Simple_repeat Simple_repeat 2 45 0 3 1116 248 301 39 10 chr3 69699109 69699213 -89900570 - PB1D7 SINE Alu -13 107 1 3 1116 6611 11 0 0 chr3 69699772 69700497 -89899286 - L1Md_T LINE L1 0 6582 5858 3 1116 12979 22 0 0 chr3 69700497 69701979 -89897804 + L1_Mm LINE L1 4126 5607 -276 3 1116 3644 187 65 32 chr3 69702187 69702907 -89896876 - Lx5 LINE L1 0 7050 6307 3 1116 246 318 45 0 chr3 69703264 69703374 -89896409 - ID_B1 SINE B4 -4 220 106 3 1116 409 213 99 2 chr3 69703407 69703549 -89896234 + B3A SINE B2 2 170 -46 3 1116 585 69 0 0 chr3 69703558 69703645 -89896138 + (CA)n Simple_repeat Simple_repeat 2 88 0 3 1116 295 268 124 0 chr3 69703690 69703787 -89895996 + PB1D9 SINE Alu 1 109 -11 3 1116 216 316 49 25 chr3 69703865 69703946 -89895837 + MIR SINE MIR 67 149 -59 3 1116 831 188 150 5 chr3 69704643 69704830 -89894953 + B3 SINE B2 3 216 0 3 1116 223 28 139 0 chr3 69704848 69704884 -89894899 + B3A SINE B2 1 41 -157 3 1116 546 133 0 0 chr3 69705154 69705244 -89894539 + (GGAA)n Simple_repeat Simple_repeat 4 93 0 3 1116 378 0 0 0 chr3 69705693 69705735 -89894048 + (CA)n Simple_repeat Simple_repeat 2 43 0 3 1116 270 136 0 0 chr3 69705750 69705794 -89893989 + (CACCAT)n Simple_repeat Simple_repeat 1 44 0 3 1116 423 0 0 0 chr3 69705943 69705990 -89893793 + (TG)n Simple_repeat Simple_repeat 2 48 0 4 1116 654 336 9 0 chr3 69707025 69707236 -89892547 + MER20 DNA MER1_type 1 213 -6 4 1116 315 0 0 0 chr3 69707389 69707424 -89892359 + (TG)n Simple_repeat Simple_repeat 2 36 0 4 1116 285 255 19 38 chr3 69707548 69707654 -89892129 + CT-rich Low_complexity Low_complexity 3 106 0 4 1116 470 156 44 7 chr3 69708256 69708392 -89891391 + (TG)n Simple_repeat Simple_repeat 2 142 0 4 1116 3735 98 43 2 chr3 69709727 69710259 -89889524 + Lx2B LINE L1 6433 6986 -14 4 1116 326 234 0 18 chr3 69710685 69710798 -89888985 + (CATATA)n Simple_repeat Simple_repeat 6 116 0 4 1116 407 254 0 12 chr3 69710831 69711002 -89888781 + (CATATA)n Simple_repeat Simple_repeat 2 170 0 4 1116 380 281 0 6 chr3 69710977 69711156 -89888627 + (CATA)n Simple_repeat Simple_repeat 2 179 0 4 1116 333 304 0 0 chr3 69711182 69711350 -89888433 + (TA)n Simple_repeat Simple_repeat 2 169 0 4 1116 279 0 0 0 chr3 69711442 69711473 -89888310 + (TG)n Simple_repeat Simple_repeat 1 31 0 4 1116 275 300 0 0 chr3 69711556 69711636 -89888147 - L1MA8 LINE L1 -130 6161 6082 4 1116 261 206 53 27 chr3 69712253 69712328 -89887455 + L1M3 LINE L1 5130 5206 -934 4 1116 221 172 17 33 chr3 69712329 69712389 -89887394 + G-rich Low_complexity Low_complexity 2 60 0 4 1116 1648 252 39 88 chr3 69712418 69712788 -89886995 + L1MA5 LINE L1 5270 5606 -694 4 1116 463 232 135 8 chr3 69712788 69712906 -89886877 + B1_Mur2 SINE Alu 1 135 -14 4 1116 216 0 0 0 chr3 69712906 69712930 -89886853 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 4 1116 1648 252 39 88 chr3 69712937 69713261 -89886522 + L1MA5 LINE L1 5607 5930 -370 4 1116 2293 93 21 9 chr3 69713585 69713910 -89885873 - ORR1A4 LTR MaLR 0 329 1 4 1116 694 250 5 93 chr3 69714185 69714379 -89885404 + B3A SINE B2 2 178 -20 4 1116 294 95 0 0 chr3 69714403 69714445 -89885338 + (CA)n Simple_repeat Simple_repeat 1 42 0 4 1116 306 73 0 0 chr3 69714447 69714488 -89885295 + (ATG)n Simple_repeat Simple_repeat 2 42 0 4 1116 1987 218 59 62 chr3 69714506 69715199 -89884584 + RLTR40 LTR ERVK 114 804 -13 4 1116 477 0 0 0 chr3 69715247 69715300 -89884483 + (TG)n Simple_repeat Simple_repeat 2 54 0 4 1116 364 269 157 16 chr3 69715301 69715422 -89884361 - RSINE1 SINE B4 -24 141 4 4 1116 566 151 9 0 chr3 69715585 69715691 -89884092 + CT-rich Low_complexity Low_complexity 2 108 0 4 1116 183 42 0 0 chr3 69716665 69716689 -89883094 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 4 1116 351 0 0 0 chr3 69717347 69717386 -89882397 + (TTA)n Simple_repeat Simple_repeat 3 41 0 4 1116 771 301 42 30 chr3 69717534 69717934 -89881849 - L1MA7 LINE L1 -324 5967 5527 4 1116 3855 41 33 0 chr3 69717937 69718397 -89881386 + MT2C_Mm LTR ERVL 1 475 0 4 1116 32185 61 2 7 chr3 69718448 69723476 -89876307 - L1Md_F2 LINE L1 0 6582 1583 4 1116 7232 120 15 10 chr3 69723476 69724963 -89874820 + MERVL_2A-int LTR ERVL 56 2028 -3733 4 1116 5200 58 22 0 chr3 69724958 69725597 -89874186 + MERVL_2A-int LTR ERVL 2141 2793 -2692 4 1116 4060 64 2 2 chr3 69725597 69726100 -89873683 + RLTR1C LTR ERV1 1 503 0 4 1116 4366 185 23 88 chr3 69726100 69727071 -89872712 + MMVL30-int LTR ERV1 1 908 -6648 4 1116 5321 201 4 0 chr3 69727071 69728019 -89871764 + MMVL30-int LTR ERV1 1057 2008 -5548 4 1116 7996 140 68 62 chr3 69728028 69729699 -89870084 + MMVL30-int LTR ERV1 1940 3621 -77 4 1116 631 126 9 59 chr3 69729690 69729832 -89869951 + RLTR1B-int LTR ERV1 3221 3299 0 4 139 4252 52 2 0 chr3 69729832 69730334 -89869449 + RLTR1C LTR ERV1 1 503 0 4 1117 14817 169 42 4 chr3 69730335 69732837 -89866946 + ERVL-int LTR ERVL 2830 5425 -332 4 1117 354 123 62 0 chr3 69732864 69732929 -89866854 + ERVL-int LTR ERVL 5561 5629 -132 4 1117 294 181 26 53 chr3 69732929 69733005 -89866778 + ORR1A3-int LTR MaLR 567 640 -1323 4 1117 321 0 0 0 chr3 69733005 69733043 -89866740 + MERVL-int LTR ERVL 5448 5485 0 4 1117 3640 27 82 0 chr3 69733043 69733482 -89866301 + MT2C_Mm LTR ERVL 1 475 0 4 1117 415 247 108 25 chr3 69733482 69733640 -89866143 - L1MA7 LINE L1 -738 5562 5392 4 1117 2056 262 84 12 chr3 69733690 69734331 -89865452 + Lx7 LINE L1 6600 7286 -410 4 1117 1228 79 6 6 chr3 69734549 69734728 -89865055 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 4 1117 793 287 80 46 chr3 69734769 69735335 -89864448 - L1MA7 LINE L1 -843 5300 4693 4 1117 1193 275 40 95 chr3 69735332 69735996 -89863787 - RMER1A Other Other -402 628 8 4 1117 2132 143 48 11 chr3 69736821 69737175 -89862608 + ORR1B2 LTR MaLR 1 367 0 4 1117 1152 124 12 25 chr3 69737175 69737430 -89862353 + ORR1B2-int LTR MaLR 1 358 -1151 4 1117 1148 75 0 7 chr3 69737509 69737657 -89862126 - B1_Mus2 SINE Alu 0 147 1 4 1117 22 0 0 0 chr3 69737768 69737790 -89861993 + AT_rich Low_complexity Low_complexity 1 22 0 4 1117 2412 73 3 9 chr3 69737843 69738162 -89861621 - L1_Mus2 LINE L1 0 6566 6250 4 1117 961 147 178 37 chr3 69738162 69738431 -89861352 + ORR1B2-int LTR MaLR 348 654 -855 4 1117 2848 221 84 30 chr3 69738452 69738504 -89861279 - RMER1C Other Other 0 1342 1298 4 1117 3189 45 2 27 chr3 69738504 69738910 -89860873 + MTA_Mm LTR MaLR 1 396 0 4 1117 2848 221 84 30 chr3 69738910 69739586 -89860197 - RMER1C Other Other -45 1297 575 4 1117 1270 163 8 23 chr3 69739599 69739862 -89859921 + ORR1B2-int LTR MaLR 1212 1470 -39 4 1117 362 150 0 0 chr3 69739939 69739999 -89859784 + ORR1B2-int LTR MaLR 1311 1370 0 4 1117 2068 138 73 6 chr3 69739999 69740342 -89859441 + ORR1B2 LTR MaLR 1 366 -1 4 1117 658 246 162 0 chr3 69740766 69740945 -89858838 + B3 SINE B2 3 210 -6 4 1117 967 139 38 32 chr3 69740992 69741178 -89858605 - B2_Mm2 SINE B2 -5 190 4 4 1117 526 254 44 0 chr3 69741246 69741360 -89858423 - B1_Mur1 SINE Alu -21 128 10 4 1117 2503 205 27 41 chr3 69741448 69742012 -89857771 - RMER1C Other Other -1 1341 786 4 1117 367 226 75 0 chr3 69742609 69742702 -89857081 - PB1D10 SINE Alu 0 117 18 4 1117 292 233 155 25 chr3 69742892 69743030 -89856753 - MER5A DNA MER1_type -2 187 30 4 1117 478 244 17 17 chr3 69743034 69743151 -89856632 - B4 SINE B4 -51 241 125 4 1117 241 231 0 44 chr3 69743151 69743219 -89856564 + RMER15 LTR ERVL 1 65 -510 4 1117 4005 143 191 18 chr3 69743312 69744066 -89855717 - RLTR25B LTR ERVK -7 1021 138 4 1117 681 24 0 0 chr3 69744066 69744149 -89855634 + (TG)n Simple_repeat Simple_repeat 2 84 0 4 1117 4005 143 191 18 chr3 69744149 69744265 -89855518 - RLTR25B LTR ERVK -891 137 3 4 1117 454 248 42 21 chr3 69744265 69744425 -89855358 + RMER15 LTR ERVL 92 315 -260 4 1117 447 19 0 0 chr3 69744467 69744519 -89855264 + (TTTTG)n Simple_repeat Simple_repeat 1 52 0 4 1117 216 0 0 0 chr3 69745203 69745227 -89854556 + (TTTG)n Simple_repeat Simple_repeat 4 27 0 4 1117 1466 149 11 19 chr3 69745227 69745493 -89854290 - RLTR24 LTR ERV1 -101 428 165 4 1117 4496 10 0 12 chr3 69745496 69745995 -89853788 + MT2_Mm LTR ERVL 1 493 0 4 1117 2767 80 0 3 chr3 69746000 69746389 -89853394 - MTA_Mm LTR MaLR 0 396 9 4 1117 865 106 35 7 chr3 69746401 69746544 -89853239 - RLTR24 LTR ERV1 -365 164 18 4 1117 782 152 14 0 chr3 69746588 69746726 -89853057 + RMER15 LTR ERVL 431 570 -5 4 1117 354 250 83 33 chr3 69746732 69746852 -89852931 - B4 SINE B4 -163 129 4 4 1117 295 228 24 0 chr3 69746980 69747059 -89852724 - B1F1 SINE Alu -20 129 47 4 1117 305 100 20 0 chr3 69747065 69747115 -89852668 + (TG)n Simple_repeat Simple_repeat 2 52 0 4 1117 295 281 22 0 chr3 69747164 69747253 -89852530 - B3A SINE B2 -107 91 1 4 1117 1413 192 287 3 chr3 69747327 69747651 -89852132 - MTD LTR MaLR 0 419 4 4 1117 279 0 0 0 chr3 69747916 69747947 -89851836 + (CAA)n Simple_repeat Simple_repeat 3 33 0 4 1117 36846 73 1 13 chr3 69748246 69754650 -89845133 - L1Md_F2 LINE L1 0 6582 263 4 1117 463 94 0 0 chr3 69754651 69754715 -89845068 - L1Md_F2 LINE L1 -6291 325 262 4 1117 644 223 42 6 chr3 69755050 69755217 -89844566 - Lx7 LINE L1 -1 7695 7523 4 1117 857 204 30 25 chr3 69755289 69755490 -89844293 - Lx7 LINE L1 -386 7310 7109 4 1117 269 118 20 0 chr3 69756890 69756941 -89842842 + (TG)n Simple_repeat Simple_repeat 1 52 0 4 1117 695 330 24 44 chr3 69756941 69757239 -89842544 - B4A SINE B4 0 292 1 4 1117 807 309 30 7 chr3 69757331 69757602 -89842181 - B4A SINE B4 -10 282 6 4 1117 1194 335 119 14 chr3 69757603 69758411 -89841372 + Charlie24 DNA MER1_type 680 1572 -878 4 1117 207 0 0 0 chr3 69758920 69758943 -89840840 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 4 1117 275 169 14 0 chr3 69759082 69759153 -89840630 + (CAT)n Simple_repeat Simple_repeat 3 74 0 4 1117 345 355 54 16 chr3 69759714 69759900 -89839883 + Charlie24 DNA MER1_type 1649 1841 -609 4 1117 1464 180 41 17 chr3 69760162 69760456 -89839327 - MTC LTR MaLR -64 357 57 4 1117 1588 241 38 52 chr3 69760434 69760645 -89839138 - MTC-int LTR MaLR -626 632 436 4 1117 1605 67 4 13 chr3 69760645 69760871 -89838912 - L1Md_F2 LINE L1 0 6582 6359 4 1117 1588 241 38 52 chr3 69760871 69761154 -89838629 - MTC-int LTR MaLR -823 435 145 4 1117 3138 206 90 25 chr3 69761154 69761996 -89837787 - RMER1B Other Other -9 1057 185 4 1117 720 35 0 0 chr3 69762084 69762171 -89837612 + (GAA)n Simple_repeat Simple_repeat 2 88 0 4 1117 1277 36 25 0 chr3 69762386 69762755 -89837028 + (CACAG)n Simple_repeat Simple_repeat 1 378 0 4 1117 2030 81 7 3 chr3 69763521 69763805 -89835978 + L1Md_F2 LINE L1 6298 6582 0 4 1117 321 78 0 0 chr3 69763865 69763874 -89835909 + (GA)n Simple_repeat Simple_repeat 1 9 0 4 1117 3138 12 3 0 chr3 69763874 69764219 -89835564 + ORR1A0 LTR MaLR 1 346 0 4 1117 321 78 0 0 chr3 69764219 69764260 -89835523 + (GA)n Simple_repeat Simple_repeat 2 42 0 4 1117 609 118 47 6 chr3 69764260 69764430 -89835353 + (TG)n Simple_repeat Simple_repeat 1 177 0 4 1117 597 118 0 0 chr3 69764537 69764647 -89835136 + (GA)n Simple_repeat Simple_repeat 2 111 0 4 1117 916 241 97 29 chr3 69764774 69765127 -89834656 - RMER1A Other Other -474 592 16 4 1117 2505 133 44 44 chr3 69765129 69765270 -89834513 - RMER6B LTR ERVK -4 457 321 4 1117 537 16 0 0 chr3 69765270 69765332 -89834451 + (CAAAC)n Simple_repeat Simple_repeat 2 63 0 4 1117 2505 133 44 44 chr3 69765332 69765647 -89834136 - RMER6B LTR ERVK -141 320 1 4 1117 664 192 16 0 chr3 69765647 69765772 -89834011 - RMER1B Other Other -894 172 46 4 1117 1910 44 0 0 chr3 69766395 69766622 -89833161 - L1_Mus2 LINE L1 -516 6050 5824 4 1117 3520 59 7 2 chr3 69766622 69767078 -89832705 + L1_Mus2 LINE L1 6091 6548 -18 4 1117 198 0 0 0 chr3 69768725 69768747 -89831036 + (T)n Simple_repeat Simple_repeat 1 22 0 4 1117 22 35 0 0 chr3 69769203 69769232 -89830551 + AT_rich Low_complexity Low_complexity 1 29 0 4 1117 329 250 0 53 chr3 69769310 69769386 -89830397 + RSINE1 SINE B4 37 108 -57 4 1117 231 180 0 39 chr3 69769397 69769449 -89830334 + (TCTCTG)n Simple_repeat Simple_repeat 3 52 0 4 1117 338 289 108 18 chr3 69770827 69771049 -89828734 + Charlie24 DNA MER1_type 2007 2248 -202 4 1117 851 321 119 31 chr3 69771650 69772203 -89827580 + MLT1E1 LTR MaLR 1 602 -52 4 1117 514 222 193 19 chr3 69772199 69772370 -89827413 - B3 SINE B2 -36 180 1 4 1117 485 244 88 94 chr3 69773475 69773827 -89825956 + L1MB8 LINE L1 4971 5320 -826 4 1117 777 313 65 65 chr3 69773942 69774598 -89825185 + L1MB8 LINE L1 5513 6168 -10 4 1117 2229 40 0 18 chr3 69774605 69774885 -89824898 + L1Md_F2 LINE L1 6306 6580 -2 4 1117 271 269 39 0 chr3 69775809 69775887 -89823896 - MER57-int LTR ERV1 -293 7244 7164 4 1117 5990 44 0 0 chr3 69775945 69776652 -89823131 - L1Md_T LINE L1 0 6582 5876 4 1117 750 301 20 30 chr3 69776968 69777266 -89822517 - L1MB1 LINE L1 -362 5827 5533 4 1117 467 288 117 6 chr3 69777270 69777441 -89822342 - MER58A DNA MER1_type -9 215 26 4 1117 344 294 64 9 chr3 69778050 69778160 -89821623 - PB1D10 SINE Alu 0 117 2 5 1117 591 15 0 0 chr3 69778167 69778235 -89821548 + (TAAAA)n Simple_repeat Simple_repeat 2 69 0 5 1117 231 103 0 0 chr3 69778441 69778480 -89821303 + (CGAG)n Simple_repeat Simple_repeat 2 40 0 5 1117 278 87 0 21 chr3 69778916 69778963 -89820820 + (TATG)n Simple_repeat Simple_repeat 1 46 0 5 1117 365 295 43 35 chr3 69779115 69779231 -89820552 - B4A SINE B4 -175 117 1 5 1117 31 44 0 0 chr3 69779815 69779860 -89819923 + AT_rich Low_complexity Low_complexity 1 45 0 5 1117 329 269 206 34 chr3 69780147 69780409 -89819374 + L1MEc LINE L1 86 392 -6008 5 1117 231 361 0 9 chr3 69780434 69780543 -89819240 + L1MEc LINE L1 495 602 -5798 5 1117 3427 179 43 11 chr3 69780802 69781451 -89818332 + RMER6C LTR ERVK 20 689 -1 5 1117 745 255 45 5 chr3 69782050 69782251 -89817532 + ORR1E LTR MaLR 1 209 -150 5 1117 26 0 0 0 chr3 69782337 69782363 -89817420 + AT_rich Low_complexity Low_complexity 1 26 0 5 1117 868 117 14 0 chr3 69783452 69783597 -89816186 + (GA)n Simple_repeat Simple_repeat 2 148 0 5 1117 3468 137 105 37 chr3 69783602 69784248 -89815535 + RMER6C LTR ERVK 1 690 0 5 1117 450 0 0 0 chr3 69784254 69784304 -89815479 + (CA)n Simple_repeat Simple_repeat 1 50 0 5 1117 405 0 0 0 chr3 69784304 69784348 -89815435 + (GA)n Simple_repeat Simple_repeat 2 46 0 5 1117 654 267 11 75 chr3 69784348 69784522 -89815261 - ORR1D1 LTR MaLR -211 163 1 5 1117 665 295 62 12 chr3 69784584 69785012 -89814771 - L1M2 LINE L1 -3346 3203 2757 5 1117 1801 218 60 0 chr3 69785035 69785388 -89814395 - ORR1D1 LTR MaLR 0 374 1 5 1117 1992 150 15 59 chr3 69785402 69785742 -89814041 + ORR1A2 LTR MaLR 3 327 0 5 1117 273 163 20 0 chr3 69785793 69785842 -89813941 + ORR1C2 LTR MaLR 1 50 -334 5 1117 331 326 119 33 chr3 69785846 69786385 -89813398 - L1M2 LINE L1 -4097 2752 2034 5 1117 6710 59 29 0 chr3 69786363 69787197 -89812586 - L1_Mus1 LINE L1 0 6567 5710 5 1117 2737 269 126 45 chr3 69787593 69789029 -89810754 + L1M2 LINE L1 3459 5011 -1132 5 1117 255 211 14 40 chr3 69789024 69789098 -89810685 + L1M2 LINE L1 5134 5205 -938 5 1117 1436 130 21 21 chr3 69789224 69789460 -89810323 - ORR1C1 LTR MaLR 0 378 143 5 1117 361 322 77 25 chr3 69790366 69790720 -89809063 + L1ME1 LINE L1 5766 6292 -42 5 1117 2438 140 111 0 chr3 69791333 69791711 -89808072 - MTC LTR MaLR -1 420 1 5 1117 1423 162 89 16 chr3 69791954 69792268 -89807515 - Lx7 LINE L1 -1 7695 7359 5 1117 319 133 0 0 chr3 69792273 69792318 -89807465 + HAL1-3A_ME LINE L1 1968 2012 -846 5 1117 373 198 9 9 chr3 69792324 69792431 -89807352 + (TA)n Simple_repeat Simple_repeat 2 108 0 5 1117 799 217 75 47 chr3 69792439 69792569 -89807214 - Lx7 LINE L1 -828 6868 6747 5 1117 3398 63 2 0 chr3 69792569 69792964 -89806819 - MTA_Mm LTR MaLR 0 396 1 5 1117 799 217 75 47 chr3 69792964 69793046 -89806737 - Lx7 LINE L1 -950 6746 6650 5 1117 320 250 131 0 chr3 69793553 69793637 -89806146 - PB1D9 SINE Alu -8 112 18 5 1117 246 283 149 8 chr3 69793741 69793862 -89805921 + MLT-int LTR MaLR 645 782 -953 5 1117 300 297 57 47 chr3 69794340 69794446 -89805337 + MLT1A1 LTR MaLR 1 107 -301 5 1117 302 201 280 73 chr3 69794570 69794720 -89805063 - RMER15 LTR ERVL -59 516 336 5 1117 1459 78 0 0 chr3 69794805 69794984 -89804799 + L1_Mus1 LINE L1 6379 6557 -10 5 1117 4442 61 7 0 chr3 69794984 69795540 -89804243 + L1Md_F2 LINE L1 5027 5586 -297 5 1117 8711 45 0 3 chr3 69795540 69796534 -89803249 + L1Md_F2 LINE L1 5587 6577 -5 5 1117 24 32 0 0 chr3 69797285 69797316 -89802467 + AT_rich Low_complexity Low_complexity 1 31 0 5 1117 1351 282 70 13 chr3 69797781 69798241 -89801542 - LTR40a LTR ERVL -2 517 32 5 1117 752 248 39 29 chr3 69798241 69798449 -89801334 - Lx7 LINE L1 -1641 6055 5846 5 1117 6060 106 32 9 chr3 69798560 69799464 -89800319 + Lx LINE L1 5725 6649 -5 5 1117 521 181 9 79 chr3 69799809 69799923 -89799860 + RLTR28 LTR ERVL 419 524 0 5 1117 510 304 77 108 chr3 69799960 69800211 -89799572 - MLT1A1-int LTR MaLR -1394 341 108 5 1117 968 84 0 14 chr3 69800211 69800356 -89799427 + (TCCC)n Simple_repeat Simple_repeat 4 146 0 5 1117 927 51 0 0 chr3 69800356 69800472 -89799311 + (TTTC)n Simple_repeat Simple_repeat 3 119 0 5 1117 510 304 77 108 chr3 69800472 69800570 -89799213 - MLT1A1-int LTR MaLR -1628 107 3 5 1117 286 282 139 44 chr3 69800572 69800709 -89799074 - MLT1A1 LTR MaLR -1 407 258 5 1117 306 0 0 0 chr3 69800753 69800787 -89798996 + (CA)n Simple_repeat Simple_repeat 2 35 0 5 1117 251 28 0 27 chr3 69801510 69801547 -89798236 + (TTTTG)n Simple_repeat Simple_repeat 4 39 0 5 1117 2691 101 16 3 chr3 69801548 69801935 -89797848 + L1_Mus4 LINE L1 5938 6329 -307 5 1117 711 330 24 0 chr3 69801949 69802161 -89797622 - B4 SINE B4 -69 223 7 5 1117 730 255 16 26 chr3 69802859 69803052 -89796731 - B3A SINE B2 -6 192 2 5 1117 205 178 0 0 chr3 69803244 69803289 -89796494 + (TA)n Simple_repeat Simple_repeat 2 46 0 5 1117 1171 0 0 0 chr3 69803669 69803801 -89795982 + MTA_Mm LTR MaLR 265 396 0 5 1117 9647 36 4 8 chr3 69803801 69804904 -89794879 + MTA_Mm-int LTR MaLR 1 1098 0 5 1117 3727 18 2 0 chr3 69804904 69805299 -89794484 + MTA_Mm LTR MaLR 1 396 0 5 1117 544 214 168 62 chr3 69805987 69806166 -89793617 - B3A SINE B2 0 198 1 5 1117 238 170 19 19 chr3 69806628 69806682 -89793101 + GA-rich Low_complexity Low_complexity 2 55 0 5 1117 213 139 0 0 chr3 69807376 69807419 -89792364 + (GA)n Simple_repeat Simple_repeat 1 43 0 5 1117 254 358 39 51 chr3 69807422 69807578 -89792205 - MLT1A0 LTR MaLR -186 179 26 5 1117 1244 75 0 0 chr3 69808299 69808446 -89791337 - B1_Mus1 SINE Alu 0 148 2 5 1117 203 79 26 0 chr3 69808750 69808788 -89790995 + (CAAAC)n Simple_repeat Simple_repeat 2 40 0 5 1117 462 244 17 9 chr3 69808833 69808949 -89790834 - B3 SINE B2 -99 117 1 5 1117 252 294 26 124 chr3 69809109 69809303 -89790480 + L1MC LINE L1 5723 5897 -1985 5 1117 348 326 102 28 chr3 69810016 69810300 -89789483 - MamRep605 Unknown Unknown -375 501 197 5 1117 932 274 103 0 chr3 69810534 69810786 -89788997 + Lx8 LINE L1 6755 7032 -441 5 1117 643 340 57 19 chr3 69810817 69811183 -89788600 + Lx8 LINE L1 7087 7466 -7 5 1117 1057 61 20 0 chr3 69814261 69814408 -89785375 - Lx3_Mus LINE L1 0 7009 6860 5 1117 323 269 53 11 chr3 69815030 69815124 -89784659 - L1MC2 LINE L1 -8 6336 6239 5 1117 500 234 26 93 chr3 69816188 69816339 -89783444 + B3A SINE B2 1 141 -57 5 1117 414 0 0 0 chr3 69816359 69816405 -89783378 + (CA)n Simple_repeat Simple_repeat 2 47 0 5 1117 274 265 0 14 chr3 69817780 69817849 -89781934 + GA-rich Low_complexity Low_complexity 3 70 0 5 1117 247 286 29 0 chr3 69818186 69818256 -89781527 + MLT1H1 LTR MaLR 482 553 -2 5 1117 412 323 99 67 chr3 69818338 69818650 -89781133 - MLT1H LTR MaLR -195 354 33 5 1117 1217 84 0 11 chr3 69819029 69819210 -89780573 + (CCTG)n Simple_repeat Simple_repeat 1 179 0 5 1117 828 172 0 0 chr3 69819210 69819379 -89780404 + (TCTG)n Simple_repeat Simple_repeat 4 172 0 5 1117 1038 197 0 62 chr3 69819935 69820146 -89779637 - B3A SINE B2 0 198 1 5 1117 238 322 0 22 chr3 69820206 69820298 -89779485 + CT-rich Low_complexity Low_complexity 2 91 0 5 1117 511 171 0 0 chr3 69820298 69820380 -89779403 - PB1D10 SINE Alu 0 117 36 5 1117 937 292 80 9 chr3 69820383 69820708 -89779075 - RCHARR1 DNA MER1_type -624 350 3 5 1117 269 307 59 48 chr3 69821242 69821454 -89778329 + MIR SINE MIR 34 241 -21 5 1117 985 243 0 5 chr3 69823013 69823216 -89776567 - B3 SINE B2 0 216 15 5 1117 230 267 0 77 chr3 69823224 69823289 -89776494 - MER33 DNA MER1_type -262 62 3 5 1117 187 286 65 0 chr3 69823882 69823959 -89775824 - L2 LINE L2 -3155 264 183 5 1117 304 221 69 59 chr3 69824366 69824467 -89775316 - B1F1 SINE Alu -24 125 24 5 1117 282 295 22 11 chr3 69825503 69825592 -89774191 - LTR85a LTR Gypsy? -575 127 38 5 1117 26 0 0 0 chr3 69825661 69825687 -89774096 + AT_rich Low_complexity Low_complexity 1 26 0 5 1117 1198 208 30 30 chr3 69825866 69826129 -89773654 + ORR1D1 LTR MaLR 1 263 -111 5 1117 181 255 19 56 chr3 69826329 69826383 -89773400 + L2a LINE L2 3111 3162 -264 5 1117 402 21 0 0 chr3 69826519 69826566 -89773217 + (TC)n Simple_repeat Simple_repeat 2 48 0 5 1117 405 0 0 0 chr3 69826566 69826610 -89773173 + (TG)n Simple_repeat Simple_repeat 2 46 0 5 1117 244 70 47 0 chr3 69827455 69827498 -89772285 + (TA)n Simple_repeat Simple_repeat 2 46 0 5 1117 4126 97 37 30 chr3 69827547 69827578 -89772205 - Lx3_Mus LINE L1 0 7009 6989 5 1117 252 0 0 0 chr3 69827578 69827606 -89772177 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 5 1117 4126 97 37 30 chr3 69827606 69828199 -89771584 - Lx3_Mus LINE L1 -21 6988 6381 5 1117 359 225 141 16 chr3 69828213 69828334 -89771449 - Lx7 LINE L1 -17 7679 7574 5 1117 306 0 0 0 chr3 69828612 69828646 -89771137 + (CA)n Simple_repeat Simple_repeat 2 35 0 5 1117 534 142 35 86 chr3 69829724 69829840 -89769943 + PB1D9 SINE Alu 2 111 -9 5 1117 453 36 0 0 chr3 69829840 69829895 -89769888 + (CCA)n Simple_repeat Simple_repeat 1 55 0 5 1117 333 68 0 0 chr3 69829899 69829943 -89769840 + (CAA)n Simple_repeat Simple_repeat 1 44 0 5 1117 1142 197 213 43 chr3 69832352 69832680 -89767103 + ORR1C2 LTR MaLR 1 384 0 5 1117 2735 123 2 2 chr3 69833677 69834084 -89765699 + MTB_Mm LTR MaLR 1 407 0 5 1117 22 35 0 0 chr3 69834316 69834345 -89765438 + AT_rich Low_complexity Low_complexity 1 29 0 5 1117 743 234 146 5 chr3 69834349 69834534 -89765249 - B3 SINE B2 -5 211 1 5 1117 402 146 0 0 chr3 69834620 69834716 -89765067 + (CA)n Simple_repeat Simple_repeat 2 97 0 5 1117 230 380 26 0 chr3 69835285 69835398 -89764385 + L2 LINE L2 2631 2746 -673 5 1117 576 254 262 39 chr3 69835421 69835983 -89763800 - Zaphod DNA Tip100 -72 3959 3273 5 1117 312 325 25 16 chr3 69835981 69836103 -89763680 - Zaphod DNA Tip100 -3409 622 500 5 1117 295 286 21 21 chr3 69836352 69836495 -89763288 - Lx7 LINE L1 0 7696 7554 5 1117 10563 180 52 9 chr3 69836492 69836557 -89763226 + Lx7 LINE L1 3397 3467 -2413 5 1117 420 20 0 0 chr3 69836557 69836606 -89763177 + (CAA)n Simple_repeat Simple_repeat 1 49 0 6 1117 10563 184 70 12 chr3 69836606 69839269 -89760514 + Lx7 LINE L1 3468 6328 -1368 5 1117 245 73 24 0 chr3 69839269 69839310 -89760473 + RMER17B LTR ERVK 1 42 -916 6 1117 1140 251 4 4 chr3 69839310 69839590 -89760193 + Lx7 LINE L1 7127 7406 -290 5 1117 1018 102 12 0 chr3 69840514 69840681 -89759102 + L1_Mus3 LINE L1 6470 6638 0 6 1117 308 327 150 85 chr3 69840861 69841166 -89758617 - L2a LINE L2 -40 3386 3064 6 1117 5051 60 3 2 chr3 69841166 69841800 -89757983 + L1_Mus1 LINE L1 5933 6567 0 6 1117 308 281 100 67 chr3 69841800 69841981 -89757802 - L2a LINE L2 -363 3063 2867 6 1117 268 348 78 28 chr3 69842036 69842178 -89757605 + LTR16A LTR ERVL 70 218 -233 6 1117 288 311 192 25 chr3 69842483 69842681 -89757102 + MIR SINE MIR 21 251 -11 6 1117 436 326 54 13 chr3 69843538 69843687 -89756096 - L2b LINE L2 0 3375 3221 6 1117 641 290 129 36 chr3 69844319 69844483 -89755300 - B4 SINE B4 -8 284 99 6 1117 1019 51 7 0 chr3 69844483 69844621 -89755162 + (TC)n Simple_repeat Simple_repeat 1 139 0 6 1117 641 290 129 36 chr3 69844621 69844681 -89755102 - B4 SINE B4 -194 98 39 6 1117 789 110 0 0 chr3 69845020 69845138 -89754645 + (TTTC)n Simple_repeat Simple_repeat 1 118 0 6 1117 534 263 15 22 chr3 69845138 69845274 -89754509 - B1_Mur1 SINE Alu -13 136 2 6 1117 1816 71 0 0 chr3 69845697 69845923 -89753860 + L1_Mus1 LINE L1 6338 6563 -4 6 1117 678 357 53 49 chr3 69845932 69846197 -89753586 + B4A SINE B4 27 292 0 6 1117 218 387 46 46 chr3 69847079 69847209 -89752574 - L2a LINE L2 -4 3422 3293 6 1117 309 352 106 14 chr3 69847483 69847624 -89752159 - HAL1-3A_ME LINE L1 -420 2438 2285 6 1117 191 256 0 0 chr3 69847693 69847732 -89752051 - L2c LINE L2 -55 3332 3294 6 1117 292 321 24 12 chr3 69848324 69848406 -89751377 - MLT1I LTR MaLR -124 287 205 6 1117 348 236 78 59 chr3 69848564 69848717 -89751066 + MER2 DNA MER2_type 88 243 -102 6 1117 247 260 108 14 chr3 69848680 69848754 -89751029 - ID4_ SINE ID -1 82 2 6 1117 391 291 0 41 chr3 69848769 69848891 -89750892 - ID_B1 SINE B4 -5 219 103 6 1117 227 234 21 0 chr3 69850063 69850110 -89749673 + RLTR11A2 LTR ERVK 47 94 -434 6 1117 2366 66 108 0 chr3 69850121 69850453 -89749330 - RLTR10A LTR ERVK -43 368 1 6 1117 37075 49 1 14 chr3 69850464 69856846 -89742937 - L1Md_A LINE L1 0 6582 286 6 1117 1394 231 35 121 chr3 69856847 69857335 -89742448 + RLTR11A2 LTR ERVK 82 527 0 6 1117 1319 259 75 14 chr3 69857341 69857690 -89742093 + ORR1D2 LTR MaLR 1 370 0 6 1117 442 252 43 17 chr3 69857690 69857806 -89741977 + RSINE1 SINE B4 13 131 -34 6 1117 375 23 0 0 chr3 69857854 69857898 -89741885 + (CA)n Simple_repeat Simple_repeat 2 45 0 6 1117 212 429 34 19 chr3 69857945 69858209 -89741574 + L3 LINE CR1 4208 4475 -14 6 1117 1833 41 0 0 chr3 69859006 69859251 -89740532 - L1_Mm LINE L1 -1843 4040 3796 6 1117 585 160 41 25 chr3 69860326 69860448 -89739335 + B1_Mus2 SINE Alu 5 128 -19 6 1117 180 111 0 0 chr3 69860526 69860553 -89739230 + (T)n Simple_repeat Simple_repeat 1 27 0 6 1117 22 35 0 0 chr3 69860967 69860996 -89738787 + AT_rich Low_complexity Low_complexity 1 29 0 6 139 10345 29 0 0 chr3 69861035 69862978 -89736805 - L1Md_A LINE L1 -13 6569 4626 6 1118 21 36 0 0 chr3 69863044 69863072 -89736711 + AT_rich Low_complexity Low_complexity 1 28 0 6 1118 595 95 19 0 chr3 69863083 69863188 -89736595 + (TAGA)n Simple_repeat Simple_repeat 3 109 0 6 1118 1144 128 65 30 chr3 69863188 69863409 -89736374 + RMER17A2 LTR ERVK 2 236 -406 6 1118 258 105 0 0 chr3 69864604 69864642 -89735141 + (TTG)n Simple_repeat Simple_repeat 2 39 0 6 1118 910 129 0 54 chr3 69867506 69867654 -89732129 - B2_Mm2 SINE B2 -55 140 1 6 1118 35263 25 0 0 chr3 69867832 69872879 -89726904 - L1Md_T LINE L1 -1 6581 1536 6 1118 233 366 109 101 chr3 69872993 69873379 -89726404 - MLT1H LTR MaLR -160 389 1 6 1118 222 37 0 0 chr3 69873999 69874026 -89725757 + (TG)n Simple_repeat Simple_repeat 2 28 0 6 1118 23 54 0 0 chr3 69874141 69874178 -89725605 + AT_rich Low_complexity Low_complexity 1 37 0 6 1118 4902 101 6 4 chr3 69874767 69875481 -89724302 - L1Md_F2 LINE L1 -6 6576 5862 6 1118 32573 66 11 1 chr3 69875492 69880049 -89719734 - L1Md_F3 LINE L1 -13 6571 1980 6 1118 354 23 0 0 chr3 69880049 69880092 -89719691 + (TTG)n Simple_repeat Simple_repeat 2 44 0 6 1118 32573 141 65 17 chr3 69880092 69881713 -89718070 - L1Md_F3 LINE L1 -3904 1979 303 6 1118 21 0 0 0 chr3 69881800 69881821 -89717962 + AT_rich Low_complexity Low_complexity 1 21 0 6 1118 273 57 0 0 chr3 69882050 69882085 -89717698 + (CAAA)n Simple_repeat Simple_repeat 3 37 0 6 1118 800 259 39 19 chr3 69882598 69882803 -89716980 - B3 SINE B2 -5 211 3 6 1118 393 293 103 22 chr3 69883990 69884126 -89715657 - B1F2 SINE Alu 0 149 3 6 1118 23 68 0 0 chr3 69884245 69884289 -89715494 + AT_rich Low_complexity Low_complexity 1 44 0 6 1118 461 326 89 0 chr3 69884542 69884677 -89715106 + RSINE1 SINE B4 2 148 -17 6 1118 262 231 115 30 chr3 69884691 69884856 -89714927 - L1M3 LINE L1 -528 5652 5474 6 1118 21 0 0 0 chr3 69885232 69885253 -89714530 + AT_rich Low_complexity Low_complexity 1 21 0 6 1118 21 0 0 0 chr3 69886005 69886026 -89713757 + AT_rich Low_complexity Low_complexity 1 21 0 6 1118 1801 189 47 53 chr3 69886062 69886418 -89713365 + ORR1C1 LTR MaLR 1 352 -26 6 1118 276 72 35 18 chr3 69886418 69886475 -89713308 + (CAA)n Simple_repeat Simple_repeat 3 60 0 6 1118 1801 189 47 53 chr3 69886475 69886498 -89713285 + ORR1C1 LTR MaLR 353 378 0 6 1118 386 195 26 17 chr3 69886534 69886649 -89713134 - Lx7 LINE L1 -260 7436 7321 6 1118 228 319 204 16 chr3 69886823 69887014 -89712769 + RMER15 LTR ERVL 276 502 -73 6 1118 4406 138 46 20 chr3 69889340 69890125 -89709658 + Lx4B LINE L1 5789 6593 -465 6 1118 1689 176 113 19 chr3 69890549 69890920 -89708863 - RMER1B Other Other 0 1066 661 6 1118 905 173 0 0 chr3 69890920 69891053 -89708730 - B1_Mur4 SINE Alu -17 133 1 6 1118 1102 221 0 0 chr3 69891060 69891255 -89708528 - MTD LTR MaLR -222 197 3 6 1118 1328 99 27 11 chr3 69891630 69891813 -89707970 + B2_Mm2 SINE B2 1 186 -9 6 1118 887 243 134 4 chr3 69892291 69892522 -89707261 + RMER1C Other Other 30 290 -1052 6 1118 2129 216 87 50 chr3 69892745 69892990 -89706793 + RMER1C Other Other 746 999 -343 6 1118 1100 109 0 6 chr3 69892990 69893166 -89706617 + (GGAGAA)n Simple_repeat Simple_repeat 6 180 0 6 1118 2129 216 87 50 chr3 69893166 69893496 -89706287 + RMER1C Other Other 1000 1342 0 6 1118 190 78 43 72 chr3 69893547 69893616 -89706167 + A-rich Low_complexity Low_complexity 1 67 0 6 1118 234 128 0 0 chr3 69894508 69894547 -89705236 + (TA)n Simple_repeat Simple_repeat 1 39 0 6 1118 609 14 0 0 chr3 69894547 69894617 -89705166 + (TCTA)n Simple_repeat Simple_repeat 1 70 0 6 1118 333 0 0 0 chr3 69894617 69894653 -89705130 + (CA)n Simple_repeat Simple_repeat 2 38 0 6 1118 934 307 57 72 chr3 69894710 69895237 -89704546 - MT2A LTR ERVL -5 528 10 6 1118 255 208 21 72 chr3 69895237 69895316 -89704467 - B1F SINE Alu -32 88 10 6 1118 419 281 8 34 chr3 69895639 69895757 -89704026 - PB1D10 SINE Alu -2 115 1 6 1118 614 302 53 36 chr3 69895761 69896008 -89703775 - MIR SINE MIR 0 262 12 6 1118 738 331 128 25 chr3 69896952 69897821 -89701962 - L1MC4 LINE L1 -312 7730 6773 6 1118 1185 75 7 0 chr3 69897821 69897967 -89701816 + B1_Mus1 SINE Alu 2 148 0 6 1118 261 363 41 0 chr3 69898038 69898184 -89701599 - L1MC4 LINE L1 -1256 6786 6635 6 1118 709 285 13 0 chr3 69898279 69898437 -89701346 - B3 SINE B2 -30 186 27 6 1118 587 240 0 0 chr3 69898542 69898646 -89701137 - PB1D10 SINE Alu -12 105 2 6 1118 367 296 0 0 chr3 69899719 69899800 -89699983 - ID4 SINE ID -1 82 2 6 1118 251 271 14 0 chr3 69900239 69900309 -89699474 + MamGypLTR2b LTR Gypsy 823 893 -29 6 1118 3544 98 57 0 chr3 69903476 69903968 -89695815 - Lx LINE L1 -1 6653 6134 6 1118 234 0 0 0 chr3 69904421 69904447 -89695336 + (TTA)n Simple_repeat Simple_repeat 2 27 0 6 1118 24 0 0 0 chr3 69904451 69904475 -89695308 + AT_rich Low_complexity Low_complexity 1 24 0 6 1118 559 0 0 27 chr3 69904623 69904696 -89695087 + (CAAAA)n Simple_repeat Simple_repeat 2 72 0 6 1118 387 0 0 0 chr3 69904816 69904859 -89694924 + (TG)n Simple_repeat Simple_repeat 1 43 0 6 1118 270 0 0 0 chr3 69904859 69904888 -89694895 + (GA)n Simple_repeat Simple_repeat 1 30 0 6 1118 445 310 27 27 chr3 69904901 69905050 -89694733 - RSINE1 SINE B4 -13 152 4 6 1118 429 36 0 0 chr3 69907101 69907156 -89692627 + (GGA)n Simple_repeat Simple_repeat 3 57 0 6 1118 225 0 0 0 chr3 69909096 69909121 -89690662 + (TG)n Simple_repeat Simple_repeat 2 26 0 6 1118 270 164 0 0 chr3 69909203 69909258 -89690525 + (TCCA)n Simple_repeat Simple_repeat 3 57 0 6 1118 398 346 41 67 chr3 69910797 69910992 -89688791 - B3A SINE B2 -1 197 8 6 1118 189 171 98 0 chr3 69911131 69911172 -89688611 - MIRb SINE MIR -52 216 172 6 1118 3133 118 25 18 chr3 69912538 69913028 -89686755 - Lx4A LINE L1 -389 6669 6177 6 1118 36 0 0 0 chr3 69913533 69913569 -89686214 + AT_rich Low_complexity Low_complexity 1 36 0 6 1118 484 243 149 0 chr3 69913581 69913762 -89686021 - Lx7 LINE L1 -18 7678 7471 6 1118 479 227 9 16 chr3 69913807 69914130 -89685653 + (CA)n Simple_repeat Simple_repeat 1 320 0 6 1118 2197 187 103 38 chr3 69914131 69914636 -89685147 - Lx7 LINE L1 -247 7449 6912 6 1118 322 268 40 86 chr3 69915182 69915333 -89684450 - L1MEg LINE L1 -4155 1929 1786 6 1118 3933 78 18 2 chr3 69915655 69916145 -89683638 - L1_Mus1 LINE L1 -1 6566 6069 6 1118 1756 301 85 0 chr3 69916188 69916719 -89683064 + Lx8 LINE L1 6343 6918 -555 6 1118 1282 294 128 31 chr3 69916781 69917753 -89682030 + L1MA4A LINE L1 2840 3905 -2238 6 1118 648 290 208 36 chr3 69917773 69918386 -89681397 + L1MA4A LINE L1 4314 5045 -1098 6 1118 1302 5 20 10 chr3 69918386 69918586 -89681197 + (CA)n Simple_repeat Simple_repeat 1 202 0 6 1118 648 290 206 36 chr3 69918586 69918722 -89681061 + L1MA4A LINE L1 5046 5206 -937 6 1118 1728 259 87 50 chr3 69918720 69919312 -89680471 + Lx7 LINE L1 6711 7327 -369 7 1118 186 43 0 0 chr3 69919312 69919335 -89680448 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 7 1118 1728 259 87 50 chr3 69919335 69919376 -89680407 + Lx7 LINE L1 7328 7367 -329 7 1118 210 325 0 12 chr3 69919390 69919471 -89680312 + GA-rich Low_complexity Low_complexity 1 80 0 7 1118 396 0 0 0 chr3 69919795 69919839 -89679944 + (TG)n Simple_repeat Simple_repeat 1 44 0 7 1118 288 0 0 0 chr3 69919839 69919870 -89679913 + (GA)n Simple_repeat Simple_repeat 1 32 0 7 1118 615 329 29 79 chr3 69920636 69921183 -89678600 + L1MA4A LINE L1 5503 6022 -278 6 1118 22 0 0 0 chr3 69922025 69922047 -89677736 + AT_rich Low_complexity Low_complexity 1 22 0 7 1118 22 0 0 0 chr3 69923022 69923044 -89676739 + AT_rich Low_complexity Low_complexity 1 22 0 7 1118 1464 80 0 46 chr3 69923067 69923263 -89676520 + B2_Mm2 SINE B2 2 188 -7 7 1118 621 305 0 51 chr3 69923295 69923492 -89676291 - B3A SINE B2 -11 187 1 7 1118 25 0 0 0 chr3 69923768 69923793 -89675990 + AT_rich Low_complexity Low_complexity 1 25 0 7 1118 26 50 0 0 chr3 69924378 69924418 -89675365 + AT_rich Low_complexity Low_complexity 1 40 0 7 1118 554 201 0 38 chr3 69924789 69924975 -89674808 + (CATA)n Simple_repeat Simple_repeat 2 180 0 7 1118 606 310 11 11 chr3 69925068 69925244 -89674539 - Lx8 LINE L1 -660 6813 6638 7 1118 416 288 103 16 chr3 69925548 69925742 -89674041 - MER44D DNA MER2_type -10 695 485 7 1118 563 40 14 0 chr3 69925752 69925826 -89673957 + (TCTA)n Simple_repeat Simple_repeat 4 78 0 7 1118 548 95 12 0 chr3 69926019 69926103 -89673680 + (TC)n Simple_repeat Simple_repeat 2 86 0 7 1118 1194 62 7 0 chr3 69926120 69926265 -89673518 - B1_Mus2 SINE Alu 0 147 2 7 1118 474 253 27 14 chr3 69926512 69926660 -89673123 + MER5C DNA MER1_type 87 236 -77 7 1118 1261 230 147 62 chr3 69927808 69927893 -89671890 + RLTR20B3 LTR ERVK 16 101 -476 7 1118 192 40 0 0 chr3 69927893 69927918 -89671865 + (C)n Simple_repeat Simple_repeat 1 25 0 7 1118 1261 230 147 62 chr3 69927918 69928350 -89671433 + RLTR20B3 LTR ERVK 102 576 -1 7 1118 382 370 94 18 chr3 69929036 69929259 -89670524 - MLT1I LTR MaLR -160 251 12 7 1118 504 0 0 0 chr3 69929994 69930050 -89669733 + (TCTA)n Simple_repeat Simple_repeat 4 59 0 7 1118 7274 105 31 14 chr3 69930984 69932399 -89667384 - L1_Mus4 LINE L1 0 6636 5220 7 1118 22 35 0 0 chr3 69932546 69932575 -89667208 + AT_rich Low_complexity Low_complexity 1 29 0 7 1118 3018 257 133 27 chr3 69932579 69933737 -89666046 - Lx9 LINE L1 -4 7640 6360 7 1118 2053 130 93 89 chr3 69935513 69935986 -89663797 + IAPLTR2_Mm LTR ERVK 1 475 0 7 1118 2012 124 9 19 chr3 69936697 69937018 -89662765 + ORR1A3 LTR MaLR 1 318 -8 7 1118 222 118 0 0 chr3 69938947 69938981 -89660802 + (TC)n Simple_repeat Simple_repeat 1 34 0 7 1118 557 292 18 35 chr3 69940196 69940423 -89659360 + L1MA6 LINE L1 6077 6299 -1 7 1118 21 0 0 0 chr3 69940722 69940743 -89659040 + AT_rich Low_complexity Low_complexity 1 21 0 7 1118 270 0 0 0 chr3 69942706 69942736 -89657047 + (CA)n Simple_repeat Simple_repeat 1 30 0 7 1118 387 0 0 0 chr3 69942736 69942778 -89657005 + (GA)n Simple_repeat Simple_repeat 2 44 0 7 1118 216 292 45 15 chr3 69943049 69943115 -89656668 - MIR3 SINE MIR -24 184 117 7 1118 230 176 19 38 chr3 69943423 69943476 -89656307 + T-rich Low_complexity Low_complexity 5 56 0 7 1118 618 84 0 0 chr3 69945295 69945378 -89654405 - B1_Mur4 SINE Alu 0 150 68 7 1118 379 231 0 52 chr3 69945378 69945389 -89654394 - ID_B1 SINE B4 0 222 134 7 1118 635 337 105 43 chr3 69945984 69946449 -89653334 - MLT1D LTR MaLR -9 496 3 7 1118 351 0 0 0 chr3 69947451 69947490 -89652293 + (CA)n Simple_repeat Simple_repeat 2 40 0 7 1118 591 139 0 0 chr3 69947820 69947921 -89651862 + (GA)n Simple_repeat Simple_repeat 1 101 0 7 1118 263 294 123 57 chr3 69948993 69949234 -89650549 + MER102b DNA MER1_type 6 264 -77 7 1118 387 0 0 0 chr3 69949734 69949777 -89650006 + (TC)n Simple_repeat Simple_repeat 1 43 0 7 1118 257 79 24 106 chr3 69949823 69949908 -89649875 + L1_Mus3 LINE L1 6503 6580 -58 7 1118 1037 247 43 40 chr3 69949918 69950268 -89649515 + Lx6 LINE L1 7110 7460 0 7 1118 535 184 24 0 chr3 69950268 69950393 -89649390 + GA-rich Low_complexity Low_complexity 1 128 0 7 1118 303 104 0 0 chr3 69951113 69951161 -89648622 + (TC)n Simple_repeat Simple_repeat 1 48 0 7 1118 469 188 102 34 chr3 69951247 69951423 -89648360 - Lx6 LINE L1 -1555 5905 5718 7 1118 1532 87 0 0 chr3 69951427 69951633 -89648150 - L1_Mus1 LINE L1 0 6567 6362 7 1118 3478 66 2 4 chr3 69951633 69952106 -89647677 + L1_Mus1 LINE L1 5853 6324 -243 7 1118 934 328 42 16 chr3 69952432 69952816 -89646967 - RMER5 LTR ERV1 -8 526 133 7 1118 378 0 0 0 chr3 69953001 69953043 -89646740 + (TG)n Simple_repeat Simple_repeat 2 43 0 7 1118 376 329 35 76 chr3 69953133 69953304 -89646479 - B4A SINE B4 -120 172 9 7 1118 532 292 150 8 chr3 69953308 69953688 -89646095 - L1M2 LINE L1 -812 5331 4898 7 1118 212 194 0 0 chr3 69953711 69953747 -89646036 + (TA)n Simple_repeat Simple_repeat 2 37 0 7 1118 303 217 37 19 chr3 69953775 69953883 -89645900 - L1M2 LINE L1 -962 5181 5072 7 1118 186 205 12 24 chr3 69953884 69953969 -89645814 + (TA)n Simple_repeat Simple_repeat 1 84 0 7 1118 1939 280 21 55 chr3 69954062 69954925 -89644858 + Lx5 LINE L1 5981 6813 -245 7 1118 2642 74 39 34 chr3 69954925 69955332 -89644451 - RLTR9E LTR ERVK 0 409 1 7 1118 1939 280 13 35 chr3 69955332 69955605 -89644178 + Lx5 LINE L1 6792 7055 -3 7 1118 393 39 0 0 chr3 69956306 69956357 -89643426 + (TATG)n Simple_repeat Simple_repeat 2 52 0 7 1118 285 128 0 0 chr3 69956570 69956617 -89643166 + (TG)n Simple_repeat Simple_repeat 2 48 0 7 1118 690 309 41 44 chr3 69956618 69956889 -89642894 - B4A SINE B4 -20 272 3 7 1118 461 72 29 0 chr3 69958936 69959005 -89640778 + (TCTA)n Simple_repeat Simple_repeat 4 74 0 7 1118 389 268 108 16 chr3 69959145 69959274 -89640509 - B1F SINE Alu -8 141 1 7 1118 843 249 8 91 chr3 69959274 69959580 -89640203 + Lx2B LINE L1 6694 6977 -23 7 1118 707 271 27 11 chr3 69959806 69959989 -89639794 - B3 SINE B2 -5 211 26 7 1118 412 308 40 11 chr3 69959995 69960157 -89639626 - Tigger7 DNA MER2_type -6 2485 2319 7 1118 735 171 6 82 chr3 69960157 69960316 -89639467 + B1_Mm SINE Alu 1 147 0 7 1118 412 308 40 11 chr3 69960316 69960327 -89639456 - Tigger7 DNA MER2_type -173 2318 2308 7 1118 245 342 31 56 chr3 69961640 69961801 -89637982 + MER106B DNA MER1_type 885 1041 -18 7 1118 1062 308 65 2 chr3 69961833 69962266 -89637517 + Lx8 LINE L1 6823 7282 -191 7 1118 657 110 0 0 chr3 69962416 69962516 -89637267 + (TTCC)n Simple_repeat Simple_repeat 1 100 0 7 1118 2548 165 14 0 chr3 69962516 69962959 -89636824 - Lx2B LINE L1 -4 6996 6548 7 1118 544 133 0 48 chr3 69962959 69963062 -89636721 + Lx2 LINE L1 6436 6533 -464 7 1118 220 49 73 0 chr3 69963307 69963348 -89636435 + (GAAA)n Simple_repeat Simple_repeat 3 46 0 7 1118 2132 293 23 11 chr3 69964408 69965025 -89634758 + RCHARR1 DNA MER1_type 3 626 -348 7 1118 1597 192 45 0 chr3 69965141 69965474 -89634309 + RCHARR1 DNA MER1_type 627 974 0 7 1118 277 357 23 30 chr3 69965924 69966057 -89633726 + MER63A DNA AcHobo 4 135 -75 7 1118 369 0 0 0 chr3 69966306 69966347 -89633436 + (TG)n Simple_repeat Simple_repeat 1 41 0 7 1118 378 0 0 0 chr3 69966347 69966388 -89633395 + (GA)n Simple_repeat Simple_repeat 1 42 0 7 1118 281 345 44 21 chr3 69967288 69967452 -89632331 + MER92B LTR ERV1 17 188 -366 7 1118 225 0 0 0 chr3 69967811 69967836 -89631947 + (TTG)n Simple_repeat Simple_repeat 3 27 0 7 1118 468 0 0 0 chr3 69968030 69968082 -89631701 + (TG)n Simple_repeat Simple_repeat 1 52 0 7 1118 245 333 39 10 chr3 69968245 69968348 -89631435 - B1F2 SINE Alu -40 109 4 7 1118 34318 66 1 13 chr3 69969024 69975139 -89624644 - L1Md_F2 LINE L1 -1 6581 547 7 1118 258 309 89 18 chr3 69975328 69975440 -89624343 - PB1D9 SINE Alu 0 120 1 7 1118 252 0 0 0 chr3 69975487 69975515 -89624268 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 7 1118 261 0 0 0 chr3 69976913 69976942 -89622841 + (TA)n Simple_repeat Simple_repeat 2 30 0 7 1118 315 0 0 0 chr3 69976942 69976976 -89622807 + (TG)n Simple_repeat Simple_repeat 2 36 0 7 1118 1012 43 65 0 chr3 69977834 69977973 -89621810 - L1Md_F3 LINE L1 -14 6570 6423 7 1118 242 309 10 30 chr3 69978234 69978434 -89621349 - L1M5 LINE L1 -3024 3122 2927 7 1118 345 374 5 70 chr3 69979353 69979540 -89620243 - MER34A LTR ERV1 -385 186 12 7 1118 180 77 0 0 chr3 69979643 69979669 -89620114 + (TCC)n Simple_repeat Simple_repeat 3 28 0 7 1118 3329 231 128 29 chr3 69979671 69980740 -89619043 - RMER1A Other Other -13 1017 47 7 1118 4306 103 3 17 chr3 69980740 69981390 -89618393 - L1_Mus3 LINE L1 0 6638 5998 7 1118 1120 276 47 77 chr3 69981390 69981482 -89618301 - RMER1B Other Other -904 162 76 7 1118 315 104 0 0 chr3 69981497 69981545 -89618238 + (TC)n Simple_repeat Simple_repeat 1 48 0 7 1118 405 0 0 0 chr3 69981545 69981590 -89618193 + (CA)n Simple_repeat Simple_repeat 1 45 0 7 1118 1017 272 7 20 chr3 69982287 69982580 -89617203 + Lx6 LINE L1 7145 7433 -27 7 1118 1481 166 99 0 chr3 69983893 69984207 -89615576 + RMER1B Other Other 711 1055 -11 7 1118 306 0 0 0 chr3 69984207 69984241 -89615542 + (GA)n Simple_repeat Simple_repeat 1 34 0 7 1118 612 245 14 21 chr3 69984246 69984388 -89615395 + B1_Mur1 SINE Alu 9 149 0 7 1118 306 0 0 0 chr3 69985512 69985546 -89614237 + (CA)n Simple_repeat Simple_repeat 2 35 0 7 1118 324 357 93 67 chr3 69986892 69987042 -89612741 - RSINE1 SINE B4 -8 157 4 7 1118 1456 138 9 13 chr3 69987246 69987473 -89612310 - MTC LTR MaLR 0 421 196 7 1118 3135 73 5 9 chr3 69987513 69987943 -89611840 + L1_Mus3 LINE L1 6205 6632 -6 7 1118 21 57 0 0 chr3 69987969 69988004 -89611779 + AT_rich Low_complexity Low_complexity 1 35 0 8 1118 2177 247 130 19 chr3 69988004 69988581 -89611202 - Lx6 LINE L1 -32 7428 6788 8 1118 1944 154 36 6 chr3 69988587 69988919 -89610864 - ORR1B2 LTR MaLR -25 342 1 8 1118 1477 271 50 17 chr3 69988920 69989555 -89610228 - Lx6 LINE L1 -894 6802 5867 8 1118 503 250 76 0 chr3 69990143 69990275 -89609508 - B1F SINE Alu -7 142 1 8 1118 366 213 11 11 chr3 69990287 69990382 -89609401 - Lx2 LINE L1 -1 6996 6902 8 1118 2171 82 16 3 chr3 69990379 69990699 -89609084 + Lx2B LINE L1 6403 6726 -274 8 1118 414 337 140 44 chr3 69991243 69991650 -89608133 + L2 LINE L2 2118 2563 -856 8 139 3331 251 48 6 chr3 69991653 69992504 -89607279 - Lx6 LINE L1 -6 7454 6353 8 1119 439 254 178 9 chr3 69992496 69992721 -89607062 + L1MA4 LINE L1 5684 5929 -371 8 1119 948 296 7 99 chr3 69992783 69993087 -89606696 - B4A SINE B4 -7 285 10 8 1119 252 196 21 32 chr3 69994514 69994609 -89605174 + CT-rich Low_complexity Low_complexity 2 95 0 8 1119 189 0 0 0 chr3 69994682 69994703 -89605080 + (T)n Simple_repeat Simple_repeat 1 21 0 8 1119 504 0 0 0 chr3 69995105 69995161 -89604622 + (TC)n Simple_repeat Simple_repeat 1 56 0 8 1119 261 0 0 0 chr3 69995161 69995189 -89604594 + (CA)n Simple_repeat Simple_repeat 1 29 0 8 1119 237 278 34 57 chr3 69995702 69995889 -89603894 + L1M5 LINE L1 5119 5304 -842 8 1119 471 236 17 154 chr3 69995973 69996148 -89603635 + RMER30 DNA MER1_type 50 200 -2 8 1119 291 313 15 0 chr3 69996192 69996326 -89603457 + L1M5 LINE L1 5571 5706 -458 8 1119 328 323 109 53 chr3 69996495 69996799 -89602984 + L1MC4 LINE L1 7611 7931 -111 8 1119 189 0 0 0 chr3 69996878 69996899 -89602884 + (TG)n Simple_repeat Simple_repeat 2 22 0 8 1119 503 319 7 14 chr3 69996903 69997043 -89602740 - RSINE1 SINE B4 -17 148 10 8 1119 403 388 88 30 chr3 69997196 69997491 -89602292 - MLT1E1A LTR MaLR -8 672 361 8 1119 416 301 75 19 chr3 69998522 69998681 -89601102 + MLT1I LTR MaLR 244 411 0 8 1119 237 83 0 0 chr3 69998704 69998740 -89601043 + (TAA)n Simple_repeat Simple_repeat 2 37 0 8 1119 285 75 0 0 chr3 69998811 69998851 -89600932 + (TG)n Simple_repeat Simple_repeat 1 40 0 8 1119 305 253 40 0 chr3 69998919 69998994 -89600789 - B4A SINE B4 -209 83 6 8 1119 502 291 66 20 chr3 69999023 69999174 -89600609 - RSINE1 SINE B4 0 165 8 8 1119 512 267 14 49 chr3 69999227 69999369 -89600414 - B1F SINE Alu -1 148 12 8 1119 2844 40 0 26 chr3 69999619 70000000 -89599783 - L1Md_F3 LINE L1 -1 6583 6213 8 1119 1477 17 0 0 chr3 70000000 70000175 -89599608 - L1Md_F3 LINE L1 -372 6212 6038 1 1119 1273 193 48 102 chr3 70000185 70000578 -89599205 + ORR1D1 LTR MaLR 1 372 -2 2 1119 359 323 139 16 chr3 70001000 70001129 -89598654 - RSINE1 SINE B4 0 165 21 3 1119 22 0 0 0 chr3 70001705 70001727 -89598056 + AT_rich Low_complexity Low_complexity 1 22 0 4 1119 327 25 0 0 chr3 70004567 70004607 -89595176 + (TG)n Simple_repeat Simple_repeat 1 40 0 5 1119 359 101 29 0 chr3 70004607 70004676 -89595107 + (CAGAGA)n Simple_repeat Simple_repeat 2 72 0 6 1119 305 135 19 0 chr3 70004691 70004743 -89595040 + HAL1-3A_ME LINE L1 1976 2028 -830 7 1119 429 193 0 0 chr3 70004745 70004880 -89594903 + GA-rich Low_complexity Low_complexity 2 136 0 8 1119 216 184 0 0 chr3 70004871 70004920 -89594863 + (CA)n Simple_repeat Simple_repeat 2 50 0 9 1119 590 175 0 6 chr3 70004919 70005097 -89594686 + GA-rich Low_complexity Low_complexity 2 178 0 1 1119 249 119 0 0 chr3 70005088 70005130 -89594653 + (CA)n Simple_repeat Simple_repeat 2 43 0 1 1119 759 22 0 0 chr3 70005130 70005219 -89594564 + (GA)n Simple_repeat Simple_repeat 1 89 0 1 1119 343 253 121 0 chr3 70005301 70005384 -89594399 + PB1 SINE Alu 16 108 -19 1 1119 1242 267 96 0 chr3 70006670 70006992 -89592791 - MTEb LTR MaLR -12 367 15 1 1119 3210 103 60 0 chr3 70007253 70007749 -89592034 - L1_Mus2 LINE L1 -407 6231 5706 1 1119 2446 67 15 3 chr3 70007754 70008082 -89591701 + L1_Mus2 LINE L1 6234 6565 -1 1 1119 250 305 67 17 chr3 70008311 70008471 -89591312 + MIR SINE MIR 58 226 -36 1 1119 351 291 54 47 chr3 70008535 70008683 -89591100 + MIRc SINE MIR 14 162 -106 1 1119 816 40 0 0 chr3 70008690 70008790 -89590993 + (TTTC)n Simple_repeat Simple_repeat 3 102 0 1 1119 182 315 19 0 chr3 70008885 70008939 -89590844 - MIRm SINE MIR -12 264 210 1 1119 349 317 97 100 chr3 70008986 70009305 -89590478 - ORR1D1 LTR MaLR -13 361 44 2 1119 221 85 0 60 chr3 70009771 70009821 -89589962 + (TTTTTG)n Simple_repeat Simple_repeat 1 47 0 2 1119 21 36 0 0 chr3 70010013 70010041 -89589742 + AT_rich Low_complexity Low_complexity 1 28 0 2 1119 285 174 145 0 chr3 70010884 70010953 -89588830 + MIR3 SINE MIR 102 180 -28 2 1119 387 202 0 0 chr3 70011689 70011773 -89588010 + (CATA)n Simple_repeat Simple_repeat 2 85 0 2 1119 557 224 8 0 chr3 70012316 70012564 -89587219 + (CA)n Simple_repeat Simple_repeat 1 250 0 2 1119 293 364 118 42 chr3 70012571 70012858 -89586925 + ORR1E LTR MaLR 1 309 -50 2 1119 222 37 0 0 chr3 70012906 70012933 -89586850 + (TG)n Simple_repeat Simple_repeat 2 28 0 2 1119 588 29 0 0 chr3 70012933 70013003 -89586780 + (CA)n Simple_repeat Simple_repeat 1 70 0 2 1119 24 32 0 0 chr3 70013134 70013165 -89586618 + AT_rich Low_complexity Low_complexity 1 31 0 2 1119 552 188 0 0 chr3 70013286 70013424 -89586359 + (CAGG)n Simple_repeat Simple_repeat 4 141 0 3 1119 409 190 0 20 chr3 70014023 70014125 -89585658 + GA-rich Low_complexity Low_complexity 4 103 0 3 1119 442 313 91 36 chr3 70014512 70014787 -89584996 + B4A SINE B4 1 290 -2 3 1119 838 244 39 23 chr3 70015070 70015299 -89584484 + ORR1D1 LTR MaLR 3 238 -156 3 1119 446 369 70 25 chr3 70015519 70015805 -89583978 + L2 LINE L2 2196 2494 -925 3 1119 222 255 0 0 chr3 70016756 70016807 -89582976 - MIRb SINE MIR -48 220 170 3 1119 6698 93 26 19 chr3 70018202 70019556 -89580227 + L1_Mus3 LINE L1 5266 6635 -3 3 1119 723 69 0 0 chr3 70019584 70019686 -89580097 + (TCTA)n Simple_repeat Simple_repeat 4 105 0 3 1119 21 36 0 0 chr3 70021096 70021124 -89578659 + AT_rich Low_complexity Low_complexity 1 28 0 3 1119 7760 38 2 2 chr3 70021137 70022372 -89577411 - L1Md_F3 LINE L1 -17 6567 5334 3 1119 1264 56 0 0 chr3 70022870 70023030 -89576753 + L1_Mus2 LINE L1 6407 6566 0 4 1119 22 56 0 0 chr3 70023443 70023479 -89576304 + AT_rich Low_complexity Low_complexity 1 36 0 4 1119 270 81 0 0 chr3 70023877 70023914 -89575869 + (CTG)n Simple_repeat Simple_repeat 2 38 0 4 1119 1022 98 7 0 chr3 70023914 70024066 -89575717 + (TTC)n Simple_repeat Simple_repeat 2 155 0 4 1119 24 0 0 0 chr3 70024886 70024910 -89574873 + AT_rich Low_complexity Low_complexity 1 24 0 4 1119 180 111 0 0 chr3 70025118 70025145 -89574638 + (TA)n Simple_repeat Simple_repeat 1 27 0 4 1119 889 277 15 0 chr3 70025442 70025648 -89574135 - B3 SINE B2 -7 209 1 4 1119 663 224 69 17 chr3 70026451 70026624 -89573159 + B3A SINE B2 1 182 -16 4 1119 333 0 0 0 chr3 70026631 70026668 -89573115 + (TA)n Simple_repeat Simple_repeat 1 37 0 4 1119 352 106 0 0 chr3 70026669 70026716 -89573067 + HAL1-3A_ME LINE L1 1976 2022 -836 4 1119 25 51 0 0 chr3 70026835 70026874 -89572909 + AT_rich Low_complexity Low_complexity 1 39 0 5 1119 365 0 22 0 chr3 70028185 70028230 -89571553 + (TG)n Simple_repeat Simple_repeat 2 47 0 5 1119 255 307 174 32 chr3 70028734 70028889 -89570894 - MLT1J1 LTR MaLR -4 444 268 5 1119 279 342 96 10 chr3 70028935 70029124 -89570659 - MLT1J1 LTR MaLR -248 200 1 5 1119 744 266 16 11 chr3 70029241 70029427 -89570356 - B3A SINE B2 -10 188 2 5 1119 235 333 76 0 chr3 70029622 70029688 -89570095 + MER21B LTR ERV1 22 92 -771 5 1119 857 334 104 21 chr3 70029693 70030029 -89569754 + MER21B LTR ERV1 48 411 -452 5 1119 371 336 18 0 chr3 70030177 70030287 -89569496 - B4A SINE B4 -174 118 7 5 1119 2198 270 38 18 chr3 70030341 70032191 -89567592 - RMER1B Other Other -9 1057 1 5 1119 1090 241 109 7 chr3 70032208 70032492 -89567291 - RMER1B Other Other -682 384 72 5 1119 741 311 48 0 chr3 70032821 70033049 -89566734 + MER21B LTR ERV1 468 706 -157 5 1119 574 335 78 29 chr3 70033430 70033737 -89566046 - MLT1J1-int LTR MaLR -219 1168 847 5 1119 654 221 128 5 chr3 70033899 70034086 -89565697 - MER110 LTR ERV1 -240 251 42 5 1119 267 224 0 0 chr3 70034161 70034219 -89565564 + MLT1J-int LTR MaLR 684 741 -646 5 1119 570 261 78 0 chr3 70034290 70034443 -89565340 - URR1A DNA MER1_type -53 173 9 6 1119 327 285 88 56 chr3 70034893 70035040 -89564743 - MLT1J1-int LTR MaLR -1051 336 182 5 1119 279 0 0 0 chr3 70035040 70035071 -89564712 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 6 1119 327 285 88 56 chr3 70035071 70035083 -89564700 - MLT1J1-int LTR MaLR -1206 181 172 5 1119 523 339 44 40 chr3 70035314 70035583 -89564200 - MLT1J1 LTR MaLR -166 282 1 5 1119 370 0 0 0 chr3 70035967 70036014 -89563769 + L1_Mus2 LINE L1 6519 6565 -1 6 1119 557 262 108 62 chr3 70036364 70036604 -89563179 - B4A SINE B4 -25 267 17 6 1119 399 308 37 0 chr3 70036649 70036756 -89563027 - PB1D7 SINE Alu 0 120 10 6 1119 219 69 0 0 chr3 70037091 70037120 -89562663 + (GAAA)n Simple_repeat Simple_repeat 2 30 0 6 1119 264 59 0 0 chr3 70037126 70037160 -89562623 + (TGAA)n Simple_repeat Simple_repeat 3 36 0 6 1119 2034 147 22 0 chr3 70037993 70038313 -89561470 + ORR1A2 LTR MaLR 1 327 0 6 1119 489 151 0 0 chr3 70038449 70038535 -89561248 + (TA)n Simple_repeat Simple_repeat 2 87 0 6 1119 5537 75 68 4 chr3 70038553 70039333 -89560450 - L1_Mus3 LINE L1 -1 6637 5808 6 1119 6284 134 11 0 chr3 70039334 70040375 -89559408 + L1_Mus3 LINE L1 4748 5799 -84 6 1119 288 77 0 0 chr3 70040405 70040444 -89559339 + (TTTC)n Simple_repeat Simple_repeat 2 40 0 7 1119 323 258 10 88 chr3 70040450 70040552 -89559231 - ID_B1 SINE B4 -1 223 130 7 1119 2221 172 53 5 chr3 70040560 70040957 -89558826 - MTC LTR MaLR 0 421 6 7 1119 231 214 34 51 chr3 70041456 70041515 -89558268 + RLTR22_Mur LTR ERVK 1292 1349 -499 7 1119 647 258 60 24 chr3 70041720 70042066 -89557717 - MLT1B LTR MaLR -1 389 3 7 1119 318 50 0 0 chr3 70042134 70042174 -89557609 + (CAACC)n Simple_repeat Simple_repeat 4 43 0 7 1119 31 26 0 0 chr3 70042174 70042212 -89557571 + AT_rich Low_complexity Low_complexity 1 38 0 7 1119 202 366 73 49 chr3 70042783 70042987 -89556796 - MIR SINE MIR -46 216 8 7 1119 761 273 31 119 chr3 70043274 70043594 -89556189 - MTE2b LTR MaLR -87 292 1 7 1119 287 314 111 40 chr3 70043637 70043763 -89556020 - ID_B1 SINE B4 -6 218 84 7 1119 2462 228 26 61 chr3 70044516 70045208 -89554575 - Lx6 LINE L1 -1157 6303 5636 8 1119 4173 224 66 4 chr3 70045196 70045677 -89554106 + Lx6 LINE L1 6380 6878 -582 8 1119 441 0 0 0 chr3 70045677 70045726 -89554057 + (CA)n Simple_repeat Simple_repeat 2 50 0 8 1119 4173 224 66 4 chr3 70045726 70046246 -89553537 + Lx6 LINE L1 6879 7443 -17 8 1119 1299 66 0 0 chr3 70046303 70046469 -89553314 + L1_Mus1 LINE L1 6402 6567 0 8 1119 189 0 0 0 chr3 70046509 70046530 -89553253 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 8 1119 339 149 0 0 chr3 70046527 70046601 -89553182 + (CA)n Simple_repeat Simple_repeat 2 75 0 8 1119 282 116 0 0 chr3 70047155 70047198 -89552585 + (TA)n Simple_repeat Simple_repeat 2 44 0 8 1119 534 295 44 13 chr3 70047532 70047690 -89552093 + RSINE1 SINE B4 3 165 0 8 1119 401 194 50 0 chr3 70048127 70048266 -89551517 - Lx9 LINE L1 0 7644 7499 8 1119 238 186 102 0 chr3 70048266 70048325 -89551458 - Lx9 LINE L1 -277 7367 7303 8 1119 1177 319 64 3 chr3 70048321 70048918 -89550865 - L1MB2 LINE L1 -55 6116 5484 8 1119 681 266 136 4 chr3 70049124 70049307 -89550476 - MTD LTR MaLR 0 419 204 8 1119 3718 37 42 4 chr3 70049307 70049765 -89550018 - L1Md_F2 LINE L1 0 6582 6108 9 1119 681 266 136 4 chr3 70049765 70049823 -89549960 - MTD LTR MaLR -216 203 147 8 1119 1546 183 16 62 chr3 70049875 70050183 -89549600 - ORR1D1 LTR MaLR -29 345 52 9 1119 2485 245 59 94 chr3 70050199 70051284 -89548499 - Lx7 LINE L1 -23 7437 6349 9 1119 3462 222 34 6 chr3 70051291 70052024 -89547759 - ORR1D1-int LTR MaLR -45 1325 572 9 1119 279 0 0 0 chr3 70052071 70052102 -89547681 + (TG)n Simple_repeat Simple_repeat 1 31 0 9 1119 1005 111 0 0 chr3 70052102 70052273 -89547510 + (GA)n Simple_repeat Simple_repeat 1 172 0 9 1119 543 128 0 0 chr3 70052283 70052369 -89547414 + (GGGA)n Simple_repeat Simple_repeat 2 87 0 9 1119 1139 45 0 13 chr3 70052458 70052614 -89547169 - L1Md_F2 LINE L1 0 6582 6429 9 1119 21 95 0 0 chr3 70053158 70053221 -89546562 + AT_rich Low_complexity Low_complexity 1 63 0 9 1119 246 308 88 44 chr3 70053268 70053404 -89546379 - MIRc SINE MIR -59 209 68 9 1119 522 289 27 27 chr3 70054262 70054408 -89545375 - B1F SINE Alu -3 146 1 9 1119 229 234 47 0 chr3 70054733 70054797 -89544986 - L3b LINE CR1 -396 86 20 1 1119 417 20 0 0 chr3 70055082 70055132 -89544651 + (CA)n Simple_repeat Simple_repeat 2 51 0 1 1119 180 241 0 0 chr3 70055134 70055192 -89544591 + (CCA)n Simple_repeat Simple_repeat 3 60 0 1 1119 3144 270 139 28 chr3 70055349 70056435 -89543348 - Lx8 LINE L1 -71 7402 6196 1 1119 1416 286 53 48 chr3 70056746 70057527 -89542256 - Lx8 LINE L1 -1455 6018 5229 1 1119 382 281 76 41 chr3 70057539 70057710 -89542073 - Lx6 LINE L1 -18 7442 7266 1 1119 378 114 0 0 chr3 70057744 70057814 -89541969 + (CA)n Simple_repeat Simple_repeat 1 70 0 1 1119 1225 194 102 48 chr3 70057837 70058130 -89541653 - Lx7 LINE L1 -300 7396 7088 1 1119 715 200 27 7 chr3 70058211 70058357 -89541426 - Lx7 LINE L1 -625 7071 6923 1 1119 25 0 0 0 chr3 70058673 70058698 -89541085 + AT_rich Low_complexity Low_complexity 1 25 0 1 1119 6262 83 52 12 chr3 70058702 70059615 -89540168 - Lx3A LINE L1 -9 6972 6024 1 1119 405 0 0 0 chr3 70059691 70059736 -89540047 + (TA)n Simple_repeat Simple_repeat 1 45 0 1 1119 368 278 60 24 chr3 70060412 70060578 -89539205 + L1ME1 LINE L1 5878 6049 -130 1 1119 243 0 0 0 chr3 70061847 70061874 -89537909 + (TTTTG)n Simple_repeat Simple_repeat 4 30 0 1 1119 452 93 13 0 chr3 70062072 70062147 -89537636 + (TG)n Simple_repeat Simple_repeat 2 77 0 1 1119 418 356 20 20 chr3 70062151 70062300 -89537483 - RSINE1 SINE B4 -15 150 2 1 1119 680 297 78 66 chr3 70062349 70062684 -89537099 - MLT1A LTR MaLR -13 361 23 1 1119 268 353 76 125 chr3 70062932 70062995 -89536788 - B4A SINE B4 -16 276 207 1 1119 234 0 0 0 chr3 70062995 70063021 -89536762 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 1 1119 301 312 76 91 chr3 70063021 70063245 -89536538 - ID_B1 SINE B4 -86 206 3 1 1119 598 287 118 9 chr3 70063440 70063651 -89536132 + LTR16C LTR ERVL 256 489 0 1 1119 428 93 13 0 chr3 70064338 70064413 -89535370 + (TCTA)n Simple_repeat Simple_repeat 4 79 0 1 1119 22 0 0 0 chr3 70064458 70064480 -89535303 + AT_rich Low_complexity Low_complexity 1 22 0 1 1119 23 54 0 0 chr3 70065171 70065208 -89534575 + AT_rich Low_complexity Low_complexity 1 37 0 1 1119 23 33 0 0 chr3 70065351 70065381 -89534402 + AT_rich Low_complexity Low_complexity 1 30 0 1 1119 232 326 56 0 chr3 70065425 70065514 -89534269 - LTR78 LTR ERV1 -230 1074 981 1 1119 230 132 0 19 chr3 70065810 70065864 -89533919 + (CA)n Simple_repeat Simple_repeat 2 54 0 1 1119 224 79 53 0 chr3 70065863 70065901 -89533882 + (GGGAGA)n Simple_repeat Simple_repeat 4 43 0 1 1119 669 179 0 27 chr3 70065906 70066168 -89533615 + (CA)n Simple_repeat Simple_repeat 1 254 0 1 1119 435 229 0 0 chr3 70066236 70066411 -89533372 + (CA)n Simple_repeat Simple_repeat 2 176 0 1 1119 310 341 22 50 chr3 70068302 70068481 -89531302 + MER5B DNA MER1_type 2 175 -3 1 1119 839 246 43 19 chr3 70068811 70069018 -89530765 + B3 SINE B2 5 216 0 1 1119 764 207 0 16 chr3 70070028 70070210 -89529573 + (TATG)n Simple_repeat Simple_repeat 2 180 0 1 1119 360 358 144 8 chr3 70070808 70071064 -89528719 - L2 LINE L2 -1125 2294 2004 1 1119 1546 176 56 0 chr3 70071882 70072206 -89527577 - L1_Mur3 LINE L1 -1269 4611 4270 1 1119 1603 274 25 11 chr3 70072206 70072649 -89527134 - RMER20A LTR ERVK -2 514 66 1 1119 638 113 9 0 chr3 70073073 70073179 -89526604 + (GA)n Simple_repeat Simple_repeat 1 107 0 1 1119 349 365 7 21 chr3 70073697 70073837 -89525946 - MIRb SINE MIR -10 258 121 1 1119 632 324 32 9 chr3 70074924 70075142 -89524641 + Lx8 LINE L1 7136 7358 -115 1 1119 187 376 111 32 chr3 70075188 70075468 -89524315 + L2 LINE L2 2079 2380 -1039 1 1119 23 0 0 0 chr3 70075502 70075525 -89524258 + AT_rich Low_complexity Low_complexity 1 23 0 1 1119 265 330 112 9 chr3 70076354 70076470 -89523313 - MER5A1 DNA MER1_type -20 146 19 1 1119 467 300 150 31 chr3 70077067 70077608 -89522175 - MLT2F LTR ERVL 0 663 2 1 1119 505 377 25 6 chr3 70078038 70078198 -89521585 - RSINE1 SINE B4 0 165 3 1 1119 668 215 148 42 chr3 70078300 70078489 -89521294 - B3 SINE B2 -5 211 3 1 1119 22 56 0 0 chr3 70079280 70079316 -89520467 + AT_rich Low_complexity Low_complexity 1 36 0 1 1119 198 0 0 0 chr3 70079473 70079495 -89520288 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 1 1119 931 274 15 51 chr3 70079514 70079845 -89519938 + Lx7 LINE L1 6694 7012 -684 1 1119 2648 47 0 0 chr3 70080128 70080447 -89519336 - L1Md_F2 LINE L1 -133 6449 6131 1 1119 728 82 0 39 chr3 70080447 70080574 -89519209 + L1Md_F2 LINE L1 6461 6582 0 1 1119 360 0 0 0 chr3 70081185 70081225 -89518558 + (CA)n Simple_repeat Simple_repeat 1 40 0 1 1119 3708 228 52 40 chr3 70081246 70083172 -89516611 - Lx5 LINE L1 -74 6984 5058 1 1119 648 93 0 0 chr3 70083232 70083329 -89516454 + (TTTC)n Simple_repeat Simple_repeat 1 97 0 1 1119 761 19 0 36 chr3 70083332 70083443 -89516340 + (TCCC)n Simple_repeat Simple_repeat 4 110 0 1 1119 796 231 0 0 chr3 70083443 70083586 -89516197 - B1_Mus1 SINE Alu 0 148 6 1 1119 2656 124 199 0 chr3 70083705 70084173 -89515610 - L1_Mm LINE L1 -724 5159 4599 1 1119 3139 60 0 0 chr3 70084177 70084574 -89515209 + L1_Mus1 LINE L1 6171 6567 0 1 1119 511 313 88 50 chr3 70084785 70085047 -89514736 - ORR1E LTR MaLR -82 277 6 1 1119 1214 54 0 0 chr3 70085312 70085459 -89514324 + B1_Mm SINE Alu 1 147 0 1 1119 245 143 36 0 chr3 70089065 70089121 -89510662 + CT-rich Low_complexity Low_complexity 2 59 0 1 1119 1629 105 3 101 chr3 70089654 70089940 -89509843 - L1_Mus2 LINE L1 -4 6562 6305 1 1119 4491 37 0 0 chr3 70089953 70090490 -89509293 + L1_Mus2 LINE L1 5588 6124 -442 1 1119 354 331 89 11 chr3 70090557 70090737 -89509046 - MLT1F LTR MaLR -227 321 128 1 1119 1260 134 91 54 chr3 70091362 70091638 -89508145 + RMER4B LTR ERVK 9 294 -291 1 1119 1454 205 42 19 chr3 70091666 70091979 -89507804 + RMER4B LTR ERVK 253 572 -13 1 1119 367 273 11 64 chr3 70091985 70092267 -89507516 + RMER17D LTR ERVK 285 551 -338 1 1119 506 269 62 0 chr3 70092317 70092462 -89507321 - Lx9 LINE L1 -470 7174 7021 1 1119 463 297 11 49 chr3 70093122 70093306 -89506477 + Lx8 LINE L1 6980 7156 -317 1 1119 561 278 33 46 chr3 70093306 70093337 -89506446 + B4A SINE B4 142 169 -123 1 1119 450 36 0 0 chr3 70093337 70093393 -89506390 + (CA)n Simple_repeat Simple_repeat 2 57 0 1 1119 561 278 33 46 chr3 70093393 70093512 -89506271 + B4A SINE B4 170 290 -2 1 1119 510 210 69 7 chr3 70093844 70093988 -89505795 + Lx9 LINE L1 7488 7640 -4 1 1119 234 0 0 0 chr3 70094056 70094082 -89505701 + (TG)n Simple_repeat Simple_repeat 1 26 0 1 1119 345 100 0 0 chr3 70094082 70094132 -89505651 + (TA)n Simple_repeat Simple_repeat 1 50 0 1 1119 244 208 40 32 chr3 70094145 70094269 -89505514 + (TTATA)n Simple_repeat Simple_repeat 5 129 0 1 1119 274 173 12 47 chr3 70094146 70094231 -89505552 + (TATAA)n Simple_repeat Simple_repeat 5 86 0 1 1119 527 342 145 10 chr3 70094381 70094685 -89505098 + MLT2B3 LTR ERVL 8 352 -202 1 1119 23 0 0 0 chr3 70095035 70095058 -89504725 + AT_rich Low_complexity Low_complexity 1 23 0 1 1119 1235 108 16 46 chr3 70095279 70095473 -89504310 - B2_Mm2 SINE B2 -7 188 1 1 1119 4813 67 1 30 chr3 70095484 70096144 -89503639 - L1Md_F2 LINE L1 -1 6581 5941 1 1119 3528 46 4 3 chr3 70096144 70096648 -89503135 + L1Md_F2 LINE L1 5437 5941 -641 1 1119 729 236 0 7 chr3 70096757 70096906 -89502877 - B1_Mur4 SINE Alu -1 149 2 1 1119 625 284 12 49 chr3 70096966 70097129 -89502654 - RSINE1 SINE B4 0 165 9 1 1119 24 0 0 0 chr3 70097148 70097172 -89502611 + AT_rich Low_complexity Low_complexity 1 24 0 1 1119 495 0 0 0 chr3 70097288 70097343 -89502440 + (TG)n Simple_repeat Simple_repeat 2 56 0 1 1119 208 259 16 65 chr3 70097442 70097504 -89502279 - L2a LINE L2 -10 3416 3358 1 1119 272 120 0 20 chr3 70097918 70097942 -89501841 + (TC)n Simple_repeat Simple_repeat 1 24 0 1 1119 1008 154 0 0 chr3 70097942 70098117 -89501666 + CT-rich Low_complexity Low_complexity 2 176 0 1 1119 272 120 0 20 chr3 70098117 70098143 -89501640 + (TC)n Simple_repeat Simple_repeat 1 26 0 1 1119 1174 285 109 39 chr3 70099101 70099762 -89500021 - Lx8 LINE L1 -42 7431 6725 1 1119 25 31 0 0 chr3 70099815 70099847 -89499936 + AT_rich Low_complexity Low_complexity 1 32 0 1 1119 207 0 0 0 chr3 70100127 70100150 -89499633 + (T)n Simple_repeat Simple_repeat 1 23 0 1 1119 346 169 54 16 chr3 70101279 70101371 -89498412 + Lx7 LINE L1 7617 7696 0 1 1119 3212 118 59 34 chr3 70102557 70103116 -89496667 + Lx LINE L1 6066 6638 -16 1 1119 1641 224 238 4 chr3 70103222 70103702 -89496081 + RMER19B LTR ERVK 309 900 -2 1 1119 841 326 114 12 chr3 70104358 70104699 -89495084 - MTEa-int LTR MaLR -404 1176 801 1 1119 225 94 0 0 chr3 70104699 70104731 -89495052 + (TTTTC)n Simple_repeat Simple_repeat 2 33 0 1 1119 1490 47 5 0 chr3 70104844 70105037 -89494746 - L1Md_A LINE L1 -1 6581 6388 1 1119 1818 328 76 27 chr3 70105038 70105810 -89493973 - MTEa-int LTR MaLR -770 810 1 1 1119 489 269 67 0 chr3 70105815 70105934 -89493849 - MTEa LTR MaLR -5 374 248 1 1119 3677 160 217 7 chr3 70106078 70106820 -89492963 - RMER19B LTR ERVK -4 898 1 1 1119 406 197 8 30 chr3 70107015 70107146 -89492637 + CT-rich Low_complexity Low_complexity 3 130 0 1 1119 371 336 14 63 chr3 70107151 70107294 -89492489 - ID_B1 SINE B4 -9 215 80 1 1119 30 0 0 0 chr3 70107679 70107709 -89492074 + AT_rich Low_complexity Low_complexity 1 30 0 1 1119 520 234 0 72 chr3 70108604 70108742 -89491041 - Lx9 LINE L1 -709 6935 6808 1 1119 1971 216 71 14 chr3 70108773 70109414 -89490369 - Lx2B LINE L1 0 7008 6483 1 1119 332 236 27 9 chr3 70109411 70109522 -89490261 + Lx9 LINE L1 7508 7620 -24 1 1119 1848 327 42 28 chr3 70109905 70110404 -89489379 - Lx9 LINE L1 -469 7175 6681 1 1119 1327 248 92 20 chr3 70110404 70110795 -89488988 + MTD LTR MaLR 1 419 0 1 1119 1848 327 42 28 chr3 70110795 70111049 -89488734 - Lx9 LINE L1 -964 6680 6411 1 1119 712 336 70 55 chr3 70111443 70112057 -89487726 - MERVL-int LTR ERVL -942 4543 3921 2 1119 579 326 58 31 chr3 70112050 70112341 -89487442 - MERVL-int LTR ERVL -1853 3814 3516 2 1119 606 323 105 40 chr3 70113198 70113521 -89486262 + MLT1G3 LTR MaLR 71 414 -181 2 1119 243 61 0 0 chr3 70114068 70114101 -89485682 + (TG)n Simple_repeat Simple_repeat 2 34 0 2 1119 395 237 149 56 chr3 70114497 70114643 -89485140 + RMER17C-int LTR ERVK 2648 2749 -489 2 1119 1146 91 0 0 chr3 70114643 70114808 -89484975 + (TCTCCC)n Simple_repeat Simple_repeat 3 167 0 2 1119 194 0 39 0 chr3 70114811 70114837 -89484946 + (TCTG)n Simple_repeat Simple_repeat 2 28 0 2 1119 395 299 71 79 chr3 70114837 70114968 -89484815 + RMER17C-int LTR ERVK 2750 2885 -353 2 1119 264 136 0 0 chr3 70114939 70114983 -89484800 + RMER17C-int LTR ERVK 4037 4080 -2057 2 1119 537 280 78 110 chr3 70115349 70115758 -89484025 + RMER10A LTR ERVL 1 396 -46 2 1119 447 19 0 0 chr3 70115964 70116016 -89483767 + (CA)n Simple_repeat Simple_repeat 1 52 0 2 1119 386 255 96 0 chr3 70116864 70116958 -89482825 + B1F SINE Alu 7 109 -40 2 1119 377 423 68 25 chr3 70117045 70117440 -89482343 - MLT1N2 LTR MaLR -58 504 93 2 1119 469 314 44 71 chr3 70118890 70119116 -89480667 + MTE2a LTR MaLR 80 299 -80 2 1119 244 264 122 27 chr3 70119316 70119464 -89480319 + HAL1b LINE L1 966 1127 -882 2 1119 263 320 32 122 chr3 70120864 70121117 -89478666 - MIR SINE MIR 0 262 33 2 1119 6260 206 30 25 chr3 70121228 70122574 -89477209 - Lx7 LINE L1 0 7696 6344 2 1119 2691 284 34 45 chr3 70122575 70123493 -89476290 - RCHARR1 DNA MER1_type 0 974 67 2 1120 242 269 73 31 chr3 70124061 70124157 -89475626 - MLT1J2 LTR MaLR -9 439 340 2 1120 4819 109 3 1 chr3 70124217 70124914 -89474869 - L1_Mus4 LINE L1 -3 6633 5936 2 1120 1954 177 85 12 chr3 70125006 70125476 -89474307 + Lx4B LINE L1 6470 6973 -3 2 1120 531 298 57 16 chr3 70126753 70126947 -89472836 + MLT2B1 LTR ERVL 1 202 -352 2 1120 213 234 0 0 chr3 70126960 70127024 -89472759 + CT-rich Low_complexity Low_complexity 2 65 0 2 1120 23 0 0 0 chr3 70127040 70127063 -89472720 + AT_rich Low_complexity Low_complexity 1 23 0 2 1120 569 353 29 74 chr3 70127176 70127412 -89472371 + MLT2B1 LTR ERVL 224 459 -61 2 1120 423 0 0 0 chr3 70127412 70127459 -89472324 + (GA)n Simple_repeat Simple_repeat 1 47 0 2 1120 569 353 29 74 chr3 70127459 70127531 -89472252 + MLT2B1 LTR ERVL 460 518 -2 2 1120 180 0 0 0 chr3 70128055 70128075 -89471708 + (TA)n Simple_repeat Simple_repeat 2 21 0 2 1120 225 186 21 104 chr3 70128076 70128172 -89471611 - Charlie9 DNA MER1_type -618 2139 2052 2 1120 273 217 33 0 chr3 70128335 70128395 -89471388 + ID4 SINE ID 11 72 -11 2 1120 445 121 24 0 chr3 70129132 70129215 -89470568 + (CA)n Simple_repeat Simple_repeat 2 86 0 2 1120 284 281 112 21 chr3 70130621 70130861 -89468922 - L1MC4 LINE L1 -444 7598 7337 2 1120 384 328 16 71 chr3 70130997 70131306 -89468477 - L1MC4 LINE L1 -973 7069 6778 2 1120 1769 123 8 0 chr3 70131771 70132023 -89467760 - Lx5 LINE L1 -480 6570 6317 2 1120 1902 221 56 28 chr3 70132083 70132511 -89467272 + Lx5 LINE L1 6596 7035 -15 2 1120 230 294 46 23 chr3 70132611 70132698 -89467085 - MER34A LTR ERV1 -477 94 6 2 1120 364 294 135 18 chr3 70132753 70132916 -89466867 + MER34A LTR ERV1 67 248 -323 2 1120 489 17 0 0 chr3 70133786 70133844 -89465939 + (TG)n Simple_repeat Simple_repeat 1 58 0 2 1120 290 338 97 85 chr3 70133997 70134162 -89465621 - B4A SINE B4 -117 175 9 2 1120 30 27 0 0 chr3 70134437 70134474 -89465309 + AT_rich Low_complexity Low_complexity 1 37 0 2 1120 30 0 0 0 chr3 70135210 70135240 -89464543 + AT_rich Low_complexity Low_complexity 1 30 0 2 1120 438 36 0 0 chr3 70136079 70136135 -89463648 + (CA)n Simple_repeat Simple_repeat 2 57 0 2 1120 195 132 105 0 chr3 70136539 70136577 -89463206 - L3 LINE CR1 -1895 2594 2553 2 1120 1858 22 0 9 chr3 70136773 70136998 -89462785 - L1Md_F2 LINE L1 -13 6569 6347 2 1120 251 343 161 13 chr3 70137351 70137554 -89462229 - MamGypLTR1d LTR Gypsy -2 780 574 2 1120 283 331 39 112 chr3 70138660 70138906 -89460877 + B4 SINE B4 71 289 -3 2 1120 429 20 0 0 chr3 70138906 70138956 -89460827 + (TA)n Simple_repeat Simple_repeat 1 50 0 2 1120 228 235 0 129 chr3 70138956 70138972 -89460811 + RSINE1 SINE B4 150 165 0 2 1120 214 95 48 0 chr3 70139006 70139048 -89460735 + (CCA)n Simple_repeat Simple_repeat 1 44 0 2 1120 204 40 0 0 chr3 70139050 70139075 -89460708 + (TTG)n Simple_repeat Simple_repeat 3 27 0 2 1120 21 0 0 0 chr3 70139969 70139990 -89459793 + AT_rich Low_complexity Low_complexity 1 21 0 2 1120 544 108 33 8 chr3 70140002 70140124 -89459659 + (TCTA)n Simple_repeat Simple_repeat 2 126 0 2 1120 514 332 30 11 chr3 70140125 70140396 -89459387 - Lx9 LINE L1 -113 7531 7256 2 1120 832 209 76 47 chr3 70140424 70140660 -89459123 - Lx9 LINE L1 -451 7193 6951 2 1120 2287 240 42 31 chr3 70140996 70141585 -89458198 - RMER1C Other Other -2 1340 745 2 1120 198 0 0 0 chr3 70142298 70142320 -89457463 + (TAA)n Simple_repeat Simple_repeat 2 23 0 2 1120 238 167 33 0 chr3 70143128 70143188 -89456595 + CT-rich Low_complexity Low_complexity 3 64 0 2 1120 291 28 0 0 chr3 70144189 70144225 -89455558 + (TG)n Simple_repeat Simple_repeat 1 36 0 2 1120 26 30 0 0 chr3 70145524 70145557 -89454226 + AT_rich Low_complexity Low_complexity 1 33 0 2 1120 392 337 144 16 chr3 70146263 70146561 -89453222 - ORR1E LTR MaLR -8 371 4 2 1120 258 56 0 0 chr3 70146720 70146756 -89453027 + (CAAAA)n Simple_repeat Simple_repeat 3 38 0 2 1120 1842 319 78 44 chr3 70146850 70146931 -89452852 - Lx8 LINE L1 -6 7467 7364 2 1120 2049 123 15 6 chr3 70146931 70147266 -89452517 - Lx3_Mus LINE L1 -8 7001 6664 2 1120 1842 319 78 44 chr3 70147266 70148098 -89451685 - Lx8 LINE L1 -110 7363 6523 2 1120 205 396 66 12 chr3 70148673 70148839 -89450944 + MIRb SINE MIR 58 232 -36 2 1120 373 375 105 32 chr3 70149182 70149372 -89450411 - MER21B LTR ERV1 -186 677 474 2 1120 559 368 57 40 chr3 70149444 70149795 -89449988 - MER21B LTR ERV1 -505 358 2 2 1120 291 302 137 61 chr3 70149842 70150018 -89449765 + MIR SINE MIR 28 221 -47 2 1120 1576 183 39 0 chr3 70150120 70150431 -89449352 + L1_Mur3 LINE L1 4200 4522 -1358 2 1120 417 299 68 32 chr3 70150878 70151201 -89448582 + L1MD LINE L1 4371 4708 -1438 2 1120 6082 118 14 12 chr3 70151256 70152470 -89447313 + L1VL4 LINE L1 50 1272 -2287 2 1120 282 326 0 0 chr3 70152685 70152774 -89447009 + ORR1D1 LTR MaLR 53 141 -233 2 1120 255 193 122 22 chr3 70152819 70152909 -89446874 + ORR1D1 LTR MaLR 267 365 -9 2 1120 366 313 126 46 chr3 70152964 70153312 -89446471 - MTEa LTR MaLR -1 378 3 2 1120 318 305 21 0 chr3 70153317 70153412 -89446371 - MTEa-int LTR MaLR -23 1557 1461 2 1120 802 344 26 15 chr3 70153628 70153894 -89445889 - MTEa-int LTR MaLR -231 1349 1081 2 1120 1860 222 29 63 chr3 70153924 70154415 -89445368 + Lx7 LINE L1 7021 7494 -202 2 1120 198 0 0 0 chr3 70154417 70154439 -89445344 + (GA)n Simple_repeat Simple_repeat 2 23 0 2 1120 590 143 9 0 chr3 70154794 70154899 -89444884 + CT-rich Low_complexity Low_complexity 1 106 0 2 1120 208 361 28 0 chr3 70154941 70155013 -89444770 - MIR3 SINE MIR -22 186 113 2 1120 247 377 38 8 chr3 70155166 70155297 -89444486 + ORR1C2 LTR MaLR 24 158 -226 2 1120 207 205 0 0 chr3 70155560 70155599 -89444184 + (TATATG)n Simple_repeat Simple_repeat 1 39 0 2 1120 261 0 0 0 chr3 70155602 70155631 -89444152 + (CA)n Simple_repeat Simple_repeat 1 29 0 2 1120 537 92 0 0 chr3 70155631 70155707 -89444076 + (TA)n Simple_repeat Simple_repeat 2 77 0 2 1120 573 15 0 0 chr3 70156873 70156939 -89442844 + (CA)n Simple_repeat Simple_repeat 2 67 0 2 1120 333 0 0 0 chr3 70156942 70156979 -89442804 + (CAAAA)n Simple_repeat Simple_repeat 1 37 0 2 1120 26804 139 21 5 chr3 70157545 70163666 -89436117 - L1_Mus3 LINE L1 0 6638 405 2 1120 334 313 23 38 chr3 70164564 70164646 -89435137 + MTEb LTR MaLR 241 319 -60 2 1120 4945 38 38 2 chr3 70164646 70165260 -89434523 - L1Md_F3 LINE L1 0 6584 5949 2 1120 334 313 23 38 chr3 70165260 70165310 -89434473 + MTEb LTR MaLR 320 371 -8 2 1120 266 328 66 0 chr3 70166817 70166939 -89432844 + L2 LINE L2 2285 2414 -1005 2 1120 837 268 63 26 chr3 70167075 70167343 -89432440 - Lx6 LINE L1 -46 7414 7137 2 1120 226 401 26 37 chr3 70167382 70167571 -89432212 + L2 LINE L2 2673 2859 -560 2 1120 21 0 0 0 chr3 70167718 70167739 -89432044 + AT_rich Low_complexity Low_complexity 1 21 0 2 1120 586 252 0 53 chr3 70167784 70167802 -89431981 - B1F2 SINE Alu 0 149 133 2 1120 1151 48 0 20 chr3 70167802 70167952 -89431831 - B1_Mm SINE Alu 0 147 1 2 1120 586 252 0 53 chr3 70167952 70168084 -89431699 - B1F2 SINE Alu -17 132 7 2 1120 245 322 11 11 chr3 70168391 70168482 -89431301 + MER82 DNA MER2_type 7 97 -556 2 1120 276 152 0 0 chr3 70169739 70169805 -89429978 + A-rich Low_complexity Low_complexity 1 66 0 2 1120 383 271 104 19 chr3 70169860 70170014 -89429769 + MER82 DNA MER2_type 98 264 -389 2 1120 550 308 111 21 chr3 70170052 70170241 -89429542 + MER82 DNA MER2_type 364 569 -84 2 1120 376 257 0 0 chr3 70170345 70170406 -89429377 + ID_B1 SINE B4 99 159 -65 2 1120 781 286 23 160 chr3 70170406 70170543 -89429240 - ORR1B2 LTR MaLR -3 391 236 2 1120 645 157 23 8 chr3 70170543 70170671 -89429112 + Lx3B LINE L1 6840 6969 -4 2 1120 781 283 23 163 chr3 70170671 70170702 -89429081 - ORR1B2 LTR MaLR -132 235 226 2 1120 363 23 0 0 chr3 70170702 70170746 -89429037 + (CA)n Simple_repeat Simple_repeat 1 44 0 2 1120 781 292 24 154 chr3 70170746 70171008 -89428775 - ORR1B2 LTR MaLR -142 252 6 2 1120 181 172 17 33 chr3 70171032 70171092 -89428691 + A-rich Low_complexity Low_complexity 2 60 0 2 1120 2108 305 80 27 chr3 70172909 70172970 -89426813 - MER21B LTR ERV1 -5 858 803 2 1120 225 0 0 0 chr3 70172970 70172995 -89426788 + (TG)n Simple_repeat Simple_repeat 2 26 0 2 1120 2108 305 80 27 chr3 70172995 70173708 -89426075 - MER21B LTR ERV1 -61 802 44 2 1120 259 254 17 0 chr3 70173736 70173795 -89425988 - MER21B LTR ERV1 -799 64 5 2 1120 225 326 33 11 chr3 70173780 70173870 -89425913 - MER21B LTR ERV1 -757 106 15 2 1120 243 0 0 0 chr3 70174033 70174060 -89425723 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2 1120 3660 81 13 27 chr3 70175265 70175788 -89423995 - L1_Mus3 LINE L1 -7 6631 6116 2 1120 22 0 0 0 chr3 70175970 70175992 -89423791 + AT_rich Low_complexity Low_complexity 1 22 0 2 1120 1872 184 124 27 chr3 70176042 70176556 -89423227 + RLTR12A LTR ERVK 1 564 -4 2 1120 833 289 20 0 chr3 70176877 70177123 -89422660 + Lx9 LINE L1 6307 6557 -1087 2 1120 4592 144 18 1 chr3 70177122 70178085 -89421698 - Lx LINE L1 -709 5945 4962 2 1120 3862 123 59 11 chr3 70178085 70178726 -89421057 + Lx LINE L1 5983 6654 0 2 1120 27954 79 9 65 chr3 70178727 70182705 -89417078 + L1Md_F2 LINE L1 570 4199 -1684 2 1120 4264 83 0 0 chr3 70182705 70183269 -89416514 + L1Md_T LINE L1 6019 6582 0 2 1120 27954 78 10 77 chr3 70183269 70184621 -89415162 + L1Md_F2 LINE L1 4200 5585 -298 2 1120 7245 72 16 4 chr3 70184622 70185592 -89414191 + L1Md_F2 LINE L1 5588 6568 -14 2 1120 3111 264 48 38 chr3 70185631 70186668 -89413115 + Lx9 LINE L1 6548 7595 -49 2 1120 423 283 239 83 chr3 70189504 70189831 -89409952 - MTEa LTR MaLR -1 378 1 2 1120 241 250 39 13 chr3 70190075 70190152 -89409631 - L2 LINE L2 -871 2548 2470 2 1120 1229 71 6 0 chr3 70190639 70190808 -89408975 + (GA)n Simple_repeat Simple_repeat 1 170 0 3 1120 232 148 0 103 chr3 70190833 70190901 -89408882 + LTR59 LTR ERV1 251 311 -286 3 1120 359 341 6 0 chr3 70190909 70191082 -89408701 + (CA)n Simple_repeat Simple_repeat 1 174 0 3 1120 194 204 114 0 chr3 70191742 70191786 -89407997 + MIRm SINE MIR 199 247 -29 3 1120 184 235 39 0 chr3 70191781 70191832 -89407951 + L3 LINE CR1 4227 4279 -210 3 1120 471 87 0 0 chr3 70192617 70192686 -89407097 + (TG)n Simple_repeat Simple_repeat 2 70 0 3 1120 276 311 54 0 chr3 70192697 70192771 -89407012 - RSINE1 SINE B4 -24 141 64 3 1120 477 0 0 0 chr3 70192841 70192894 -89406889 + (TG)n Simple_repeat Simple_repeat 2 54 0 3 1120 1302 198 112 16 chr3 70193546 70193859 -89405924 + Lx LINE L1 6310 6652 -2 3 1120 2912 79 8 2 chr3 70193955 70194349 -89405434 - MTA_Mm LTR MaLR 0 396 1 3 1120 338 338 77 81 chr3 70194398 70194659 -89405124 - ORR1E LTR MaLR -50 309 50 3 1120 2310 283 52 45 chr3 70194668 70194929 -89404854 - MTE-int LTR MaLR -34 1546 1285 3 1120 1491 75 24 0 chr3 70194929 70195142 -89404641 + Lx LINE L1 6436 6653 -1 3 1120 2310 283 52 45 chr3 70195142 70195612 -89404171 - MTE-int LTR MaLR -296 1284 810 3 1120 281 186 0 0 chr3 70195634 70195677 -89404106 + RSINE1 SINE B4 24 66 -99 3 1120 207 184 0 0 chr3 70195731 70195769 -89404014 + (TGAA)n Simple_repeat Simple_repeat 3 40 0 3 1120 1422 302 64 122 chr3 70195771 70196571 -89403212 - MTE-int LTR MaLR -765 815 63 3 1120 1163 262 67 43 chr3 70196576 70196967 -89402816 - MTD LTR MaLR -7 412 13 3 1120 458 265 23 62 chr3 70197045 70197222 -89402561 - MTEb LTR MaLR -9 370 201 3 1120 1905 169 72 21 chr3 70197384 70197770 -89402013 - MTB_Mm LTR MaLR 0 407 2 3 1120 760 226 14 0 chr3 70198422 70198568 -89401215 - B1_Mur1 SINE Alu 0 149 2 3 1120 393 58 0 0 chr3 70198704 70198756 -89401027 + (TC)n Simple_repeat Simple_repeat 1 52 0 3 1120 657 237 23 0 chr3 70198937 70199068 -89400715 + ID_B1 SINE B4 84 217 -7 3 1120 21 36 0 0 chr3 70199213 70199241 -89400542 + AT_rich Low_complexity Low_complexity 1 28 0 3 1120 2190 102 19 0 chr3 70200357 70200670 -89399113 + ORR1A2 LTR MaLR 1 319 -8 3 1120 337 188 37 12 chr3 70201504 70201585 -89398198 + L3 LINE CR1 3701 3783 -706 3 1120 186 40 0 0 chr3 70202171 70202190 -89397593 + (TA)n Simple_repeat Simple_repeat 2 20 0 3 1120 261 0 0 0 chr3 70202190 70202219 -89397564 + (CA)n Simple_repeat Simple_repeat 2 30 0 3 1120 361 276 57 103 chr3 70202510 70202704 -89397079 + MER20 DNA MER1_type 31 215 -4 3 1120 24 0 0 0 chr3 70202797 70202821 -89396962 + AT_rich Low_complexity Low_complexity 1 24 0 3 1120 1312 78 39 0 chr3 70202841 70203020 -89396763 + B2_Mm2 SINE B2 2 187 -8 3 1120 467 282 113 78 chr3 70203185 70203558 -89396225 - MamRep434 DNA TcMar -4 422 37 3 1120 348 330 153 15 chr3 70204764 70204967 -89394816 - MER21B LTR ERV1 -632 231 1 3 1120 23 0 0 0 chr3 70205698 70205721 -89394062 + AT_rich Low_complexity Low_complexity 1 23 0 3 1120 1820 218 92 28 chr3 70205821 70206646 -89393137 + Lx6 LINE L1 6394 7271 -189 3 1120 1438 221 62 117 chr3 70207128 70207855 -89391928 - RMER6C LTR ERVK -3 687 1 3 1120 361 306 19 4 chr3 70207995 70208220 -89391563 + Lx7 LINE L1 5646 5891 -1805 3 1120 203 79 0 26 chr3 70208631 70208670 -89391113 + (TTG)n Simple_repeat Simple_repeat 2 39 0 3 1120 3773 258 75 36 chr3 70209155 70211224 -89388559 - MMVL30-int LTR ERV1 -2051 5555 1516 3 1120 546 43 0 0 chr3 70211401 70211470 -89388313 + (TC)n Simple_repeat Simple_repeat 2 70 0 3 1120 423 0 0 0 chr3 70211470 70211516 -89388267 + (TG)n Simple_repeat Simple_repeat 2 48 0 3 1120 330 105 0 0 chr3 70211612 70211669 -89388114 - MMVL30-int LTR ERV1 -2187 1511 1455 3 1120 251 100 0 0 chr3 70211810 70211850 -89387933 - MMVL30-int LTR ERV1 -2269 1030 991 3 1120 477 34 0 0 chr3 70211921 70211980 -89387803 + (TTCC)n Simple_repeat Simple_repeat 2 60 0 3 1120 538 173 9 9 chr3 70212057 70212162 -89387621 - MMVL30-int LTR ERV1 -2245 1453 1349 3 1120 351 65 0 0 chr3 70213643 70213689 -89386094 + (GA)n Simple_repeat Simple_repeat 1 46 0 3 1120 1188 61 0 0 chr3 70213721 70213868 -89385915 - B1_Mm SINE Alu 0 147 1 3 1120 23 0 0 0 chr3 70214405 70214428 -89385355 + AT_rich Low_complexity Low_complexity 1 23 0 3 1120 772 362 3 35 chr3 70214467 70214753 -89385030 - B4A SINE B4 -12 280 4 3 1120 207 250 0 62 chr3 70215630 70215694 -89384089 - L4 LINE RTE -1868 161 102 3 1120 253 350 71 99 chr3 70215879 70216231 -89383552 - ORR1E LTR MaLR -11 348 7 3 1120 900 330 75 30 chr3 70216402 70217045 -89382738 + L1MCa LINE L1 22 693 -5815 3 1120 240 218 48 60 chr3 70217589 70217672 -89382111 + MER72B LTR ERV1 426 507 -261 3 1120 993 300 117 23 chr3 70217805 70218423 -89381360 + Lx8 LINE L1 6797 7472 -1 3 1120 628 249 153 40 chr3 70218426 70218834 -89380949 + L1MCa LINE L1 1759 2226 -4282 3 1120 7463 34 0 0 chr3 70218834 70219712 -89380071 + L1Md_T LINE L1 5705 6582 0 3 1120 628 249 153 40 chr3 70219712 70219779 -89380004 + L1MCa LINE L1 2227 2288 -4220 3 1120 1981 83 7 11 chr3 70220554 70220834 -89378949 + L1_Mus1 LINE L1 6289 6567 0 3 1120 363 289 58 26 chr3 70221074 70221230 -89378553 - MLT1E LTR MaLR -417 236 76 3 1120 812 10 0 0 chr3 70221522 70221626 -89378157 + L1Md_T LINE L1 6479 6582 0 3 1120 2195 278 67 121 chr3 70223049 70223359 -89376424 - MTD-int LTR MaLR -224 1034 771 3 1120 3511 33 2 0 chr3 70223359 70223782 -89376001 + L1Md_A LINE L1 6159 6582 0 3 1120 2195 278 67 121 chr3 70223782 70224564 -89375219 - MTD-int LTR MaLR -488 770 2 3 1120 1242 222 123 70 chr3 70224564 70224962 -89374821 - MTD LTR MaLR 0 419 1 3 1120 859 298 79 40 chr3 70224968 70225447 -89374336 - BLACKJACK DNA AcHobo -1806 1138 641 3 1120 23 54 0 0 chr3 70225830 70225867 -89373916 + AT_rich Low_complexity Low_complexity 1 37 0 3 1120 600 302 26 94 chr3 70226681 70226948 -89372835 + B4 SINE B4 42 290 -2 3 1120 2087 160 26 3 chr3 70228704 70229049 -89370734 + ORR1B1 LTR MaLR 1 353 -41 3 1120 3763 77 0 0 chr3 70229049 70229542 -89370241 + L1Md_T LINE L1 6089 6581 -1 3 1120 243 375 76 72 chr3 70229639 70229903 -89369880 + ORR1D2 LTR MaLR 103 367 -3 3 1120 276 236 218 95 chr3 70230027 70230270 -89369513 + RCHARR1 DNA MER1_type 697 969 -5 3 1120 1281 221 86 7 chr3 70230489 70230780 -89369003 + ORR1B1 LTR MaLR 80 393 -1 3 1120 291 93 0 0 chr3 70231197 70231240 -89368543 + (TC)n Simple_repeat Simple_repeat 2 44 0 3 1120 253 221 25 49 chr3 70231241 70231322 -89368461 + CT-rich Low_complexity Low_complexity 3 81 0 3 1120 351 274 12 21 chr3 70231329 70231423 -89368360 - ID4_ SINE ID -56 96 2 3 1120 227 203 257 14 chr3 70231644 70231714 -89368069 + ID_B1 SINE B4 105 191 -33 3 1120 693 110 180 8 chr3 70232034 70232162 -89367621 - Lx3B LINE L1 -280 6693 6544 3 1120 471 288 9 0 chr3 70232481 70232592 -89367191 + B3A SINE B2 1 112 -86 3 1120 4937 115 48 9 chr3 70232742 70232755 -89367028 - Lx3A LINE L1 -1 6980 6969 3 1120 414 0 0 0 chr3 70232755 70232801 -89366982 + (TTTA)n Simple_repeat Simple_repeat 2 47 0 3 1120 4937 115 48 9 chr3 70232801 70233558 -89366225 - Lx3A LINE L1 -13 6968 6180 3 1120 5393 92 25 2 chr3 70233558 70234569 -89365214 + Lx3_Mus LINE L1 5122 6162 -847 3 1120 7459 89 26 5 chr3 70235751 70236864 -89362919 + MusHAL1 LINE L1 1 1137 -1575 3 1120 587 274 77 58 chr3 70237688 70237949 -89361834 - L1_Rod LINE L1 -1222 4625 4356 3 1120 180 0 0 0 chr3 70237949 70237969 -89361814 + (TTTTA)n Simple_repeat Simple_repeat 1 20 0 3 1120 587 274 77 58 chr3 70237969 70238134 -89361649 - L1_Rod LINE L1 -1492 4355 4191 3 1120 22 0 0 0 chr3 70238156 70238178 -89361605 + AT_rich Low_complexity Low_complexity 1 22 0 3 1120 292 242 60 10 chr3 70239075 70239175 -89360608 + MER110A LTR ERV1 4 108 -360 3 1120 390 313 87 60 chr3 70239186 70239451 -89360332 + MER110A LTR ERV1 157 428 -40 3 1120 327 311 9 19 chr3 70239533 70239638 -89360145 + PB1D7 SINE Alu 1 104 -16 3 1120 240 171 39 26 chr3 70239661 70239739 -89360044 + (CAAAC)n Simple_repeat Simple_repeat 1 79 0 3 1120 301 241 33 44 chr3 70240532 70240623 -89359160 - RSINE1 SINE B4 -1 164 75 3 1120 453 36 0 0 chr3 70241509 70241564 -89358219 + (TG)n Simple_repeat Simple_repeat 1 55 0 3 1120 2660 136 41 35 chr3 70242100 70242563 -89357220 - Lx LINE L1 -12 6642 6177 3 1120 492 93 0 0 chr3 70243410 70243485 -89356298 + (TC)n Simple_repeat Simple_repeat 1 75 0 3 1120 26 30 0 0 chr3 70244389 70244422 -89355361 + AT_rich Low_complexity Low_complexity 1 33 0 3 1120 1871 201 40 18 chr3 70244549 70244948 -89354835 - MTC LTR MaLR -8 413 6 3 1120 369 0 0 0 chr3 70244948 70244989 -89354794 + (CA)n Simple_repeat Simple_repeat 2 42 0 3 1120 2477 99 29 19 chr3 70245720 70245827 -89353956 - Lx2 LINE L1 -1027 5970 5859 3 1120 393 22 0 0 chr3 70245827 70245873 -89353910 + (TG)n Simple_repeat Simple_repeat 1 46 0 3 1120 21599 171 17 45 chr3 70245873 70249491 -89350292 - Lx2 LINE L1 -25 5852 2351 3 1120 3217 39 7 17 chr3 70249491 70249904 -89349879 + RLTR10A LTR ERVK 3 411 0 3 1120 21599 171 17 45 chr3 70249904 70250768 -89349015 - Lx2 LINE L1 -3527 2350 1494 3 1120 4226 129 30 42 chr3 70250765 70250823 -89348960 - L1VL4 LINE L1 -5344 958 904 3 1120 3366 28 5 0 chr3 70250823 70251217 -89348566 - MTA_Mm LTR MaLR 0 396 1 3 1120 4226 129 30 42 chr3 70251217 70251927 -89347856 - L1VL4 LINE L1 -5399 903 199 3 1120 854 184 0 6 chr3 70251976 70252151 -89347632 + CT-rich Low_complexity Low_complexity 2 175 0 3 1120 333 0 0 0 chr3 70252153 70252190 -89347593 + (TTTTC)n Simple_repeat Simple_repeat 4 40 0 3 1120 4749 65 11 29 chr3 70253519 70254180 -89345603 - L1Md_F2 LINE L1 -12 6570 5922 3 17 305 370 35 69 chr3 70254509 70254654 -89345129 + ID_B1 SINE B4 84 223 -1 3 1121 251 188 31 0 chr3 70254656 70254720 -89345063 + GA-rich Low_complexity Low_complexity 1 66 0 3 1121 240 137 0 0 chr3 70255113 70255164 -89344619 + (TTTTTG)n Simple_repeat Simple_repeat 2 52 0 3 1121 568 273 34 39 chr3 70255218 70255397 -89344386 + RLTR24 LTR ERV1 352 529 0 3 1121 2839 215 211 27 chr3 70255888 70256591 -89343192 + RMER1A Other Other 37 868 -162 3 1121 219 114 0 0 chr3 70256591 70256626 -89343157 + (TG)n Simple_repeat Simple_repeat 2 36 0 4 1121 2800 256 54 16 chr3 70256626 70256744 -89343039 + RMER1B Other Other 951 1066 0 3 1121 287 49 24 0 chr3 70256786 70256827 -89342956 + (CAAT)n Simple_repeat Simple_repeat 2 43 0 4 1121 261 333 0 45 chr3 70256851 70256939 -89342844 + RSINE1 SINE B4 82 165 0 4 1121 419 52 17 0 chr3 70257378 70257436 -89342347 + (TAAA)n Simple_repeat Simple_repeat 2 60 0 4 1121 572 349 43 14 chr3 70257704 70257983 -89341800 - RMER15 LTR ERVL -14 561 275 4 1121 297 205 143 12 chr3 70258190 70258274 -89341509 + Lx9 LINE L1 7371 7465 -179 4 1121 249 83 0 0 chr3 70258277 70258313 -89341470 + (TA)n Simple_repeat Simple_repeat 2 37 0 4 1121 616 169 8 0 chr3 70258315 70258445 -89341338 + Lx9 LINE L1 7513 7643 -1 4 1121 249 109 0 0 chr3 70258904 70258950 -89340833 + (A)n Simple_repeat Simple_repeat 1 46 0 4 1121 270 271 92 23 chr3 70259088 70259175 -89340608 - RLTR20A2 LTR ERVK -12 539 447 4 1121 1144 290 75 71 chr3 70259142 70259279 -89340504 - RLTR20A2 LTR ERVK -24 554 416 4 1121 6398 34 0 0 chr3 70259279 70260035 -89339748 + L1Md_T LINE L1 5826 6581 -1 4 1121 1144 290 75 71 chr3 70260035 70260443 -89339340 - RLTR20A2 LTR ERVK -163 415 7 4 1121 183 42 0 0 chr3 70260992 70261016 -89338767 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 4 1121 342 271 0 13 chr3 70261036 70261140 -89338643 - B1_Mur1 SINE Alu -1 148 20 4 1121 203 138 0 0 chr3 70261470 70261499 -89338284 + (GGGA)n Simple_repeat Simple_repeat 4 32 0 4 1121 255 103 0 0 chr3 70261502 70261541 -89338242 + (CA)n Simple_repeat Simple_repeat 2 40 0 4 1121 231 36 0 0 chr3 70261541 70261568 -89338215 + (GA)n Simple_repeat Simple_repeat 2 29 0 4 1121 249 33 0 0 chr3 70263982 70264012 -89335771 + (CA)n Simple_repeat Simple_repeat 1 30 0 4 1121 257 300 144 0 chr3 70264424 70264514 -89335269 - MLT1L LTR MaLR -507 103 1 4 1121 566 216 0 9 chr3 70264847 70264959 -89334824 - PB1D10 SINE Alu 0 117 7 4 1121 234 375 58 0 chr3 70264852 70264972 -89334811 - B4 SINE B4 -87 205 79 4 1121 1106 174 150 57 chr3 70265497 70265777 -89334006 - ORR1D1 LTR MaLR 0 374 69 4 1121 326 125 216 27 chr3 70265778 70265852 -89333931 - RLTR41 LTR ERV1 0 446 359 4 1121 4446 79 11 57 chr3 70265852 70266521 -89333262 - L1_Mus2 LINE L1 0 6566 5929 4 1121 2221 82 59 0 chr3 70266521 70266825 -89332958 - L1_Mm LINE L1 -267 5616 5295 4 1121 1721 90 8 0 chr3 70266823 70267067 -89332716 + L1_Mm LINE L1 5062 5307 -576 4 1121 1249 160 62 104 chr3 70267067 70267374 -89332409 - RLTR41 LTR ERV1 -72 374 81 4 1121 243 286 122 114 chr3 70267501 70267738 -89332045 - RMER2 LTR ERV1 -27 540 302 4 1121 2053 103 45 60 chr3 70267942 70268273 -89331510 + ORR1A3 LTR MaLR 1 326 0 4 1121 1365 233 84 6 chr3 70268470 70268828 -89330955 - RCHARR1 DNA MER1_type -1 973 588 4 1121 854 276 21 13 chr3 70268826 70268922 -89330861 - RCHARR1 DNA MER1_type -515 459 365 4 1121 381 43 0 0 chr3 70268922 70268969 -89330814 + (TTA)n Simple_repeat Simple_repeat 2 48 0 4 1121 854 276 21 13 chr3 70268969 70269107 -89330676 - RCHARR1 DNA MER1_type -610 364 224 4 1121 1351 265 27 32 chr3 70269181 70269586 -89330197 + RMER19C LTR ERVK 208 610 -1 4 1121 554 333 69 5 chr3 70269591 70269793 -89329990 - RCHARR1 DNA MER1_type -759 215 1 4 1121 21 0 0 0 chr3 70269990 70270011 -89329772 + AT_rich Low_complexity Low_complexity 1 21 0 4 1121 241 309 72 0 chr3 70270634 70270773 -89329010 - L1MEc LINE L1 -4697 1718 1570 4 1121 377 327 106 39 chr3 70270924 70271131 -89328652 - L1MEc LINE L1 -5155 1245 1025 4 1121 204 67 0 0 chr3 70271708 70271738 -89328045 + (TTTTA)n Simple_repeat Simple_repeat 1 30 0 4 1121 582 252 69 0 chr3 70272075 70272206 -89327577 - B1_Mur1 SINE Alu -7 142 3 4 1121 540 257 97 107 chr3 70272218 70272414 -89327369 - B3A SINE B2 0 195 2 4 1121 326 221 12 34 chr3 70272475 70272573 -89327210 - PB1D10 SINE Alu -56 91 3 4 1121 408 20 0 0 chr3 70272631 70272680 -89327103 + (CA)n Simple_repeat Simple_repeat 2 50 0 4 1121 207 0 0 0 chr3 70272740 70272763 -89327020 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 4 1121 2261 106 16 0 chr3 70273574 70273896 -89325887 - ORR1A2 LTR MaLR 0 327 1 4 1121 561 291 19 19 chr3 70273971 70274125 -89325658 + ID_B1 SINE B4 71 224 0 4 1121 412 175 12 24 chr3 70274145 70274227 -89325556 + ORR1A1 LTR MaLR 166 246 -100 4 1121 389 366 53 21 chr3 70274417 70274699 -89325084 - B4A SINE B4 0 292 2 4 1121 681 45 0 0 chr3 70274700 70274789 -89324994 + (CA)n Simple_repeat Simple_repeat 2 90 0 4 1121 557 233 200 22 chr3 70277561 70277741 -89322042 + ID_B1 SINE B4 2 213 -11 4 1121 201 94 0 0 chr3 70279191 70279223 -89320560 + (TC)n Simple_repeat Simple_repeat 2 33 0 4 1121 516 190 0 0 chr3 70279234 70279397 -89320386 + CT-rich Low_complexity Low_complexity 2 164 0 4 1121 524 266 56 133 chr3 70279400 70279567 -89320216 - B3A SINE B2 -16 182 31 4 1121 1068 61 7 0 chr3 70279567 70279715 -89320068 - L1Md_A LINE L1 0 6582 6434 4 1121 524 266 56 133 chr3 70279715 70279742 -89320041 - B3A SINE B2 -168 30 3 4 1121 642 344 104 27 chr3 70279781 70280193 -89319590 - MER82 DNA MER2_type -3 650 207 4 1121 424 252 40 0 chr3 70280254 70280353 -89319430 - MER82 DNA MER2_type -542 111 9 4 1121 195 167 0 0 chr3 70280482 70280524 -89319259 + (ATG)n Simple_repeat Simple_repeat 2 43 0 4 1121 30 0 0 0 chr3 70280580 70280610 -89319173 + AT_rich Low_complexity Low_complexity 1 30 0 4 1121 1205 53 0 17 chr3 70281300 70281474 -89318309 + L1Md_F2 LINE L1 6412 6582 0 4 1121 307 338 62 7 chr3 70281641 70281787 -89317996 + MIRb SINE MIR 76 229 -39 4 1121 2891 146 51 12 chr3 70282686 70283192 -89316591 + RLTR24 LTR ERV1 1 526 -3 4 1121 273 316 77 65 chr3 70283218 70283387 -89316396 + MLT1L LTR MaLR 432 602 -8 4 1121 294 330 49 31 chr3 70283804 70283971 -89315812 + MIRc SINE MIR 32 196 -72 4 1121 25 0 0 0 chr3 70284547 70284572 -89315211 + AT_rich Low_complexity Low_complexity 1 25 0 4 1121 928 262 37 144 chr3 70284713 70285039 -89314744 + MTD LTR MaLR 129 419 0 4 1121 279 0 0 0 chr3 70285042 70285073 -89314710 + (TTTTA)n Simple_repeat Simple_repeat 5 35 0 4 1121 375 23 0 0 chr3 70285924 70285968 -89313815 + (TGAA)n Simple_repeat Simple_repeat 3 46 0 4 1121 399 56 0 0 chr3 70286231 70286285 -89313498 + (CAAAA)n Simple_repeat Simple_repeat 2 55 0 4 1121 183 80 0 0 chr3 70287534 70287559 -89312224 + (A)n Simple_repeat Simple_repeat 1 25 0 4 1121 607 305 0 0 chr3 70287797 70287925 -89311858 - B3A SINE B2 -64 134 7 4 1121 446 305 33 25 chr3 70288076 70288197 -89311586 - RSINE1 SINE B4 -21 144 23 4 1121 32 0 0 0 chr3 70289617 70289649 -89310134 + AT_rich Low_complexity Low_complexity 1 32 0 4 1121 238 274 32 0 chr3 70289976 70290038 -89309745 + tRNA-Ala-GCY_ tRNA tRNA 3 66 -9 4 1121 486 0 0 0 chr3 70290148 70290202 -89309581 + (TCTA)n Simple_repeat Simple_repeat 4 57 0 4 1121 244 299 167 6 chr3 70290202 70290370 -89309413 - RMER15 LTR ERVL -105 470 276 4 1121 1148 102 0 11 chr3 70290857 70291036 -89308747 + (TTCTC)n Simple_repeat Simple_repeat 4 180 0 4 1121 590 117 9 18 chr3 70291037 70291150 -89308633 - Lx LINE L1 0 6654 6543 4 1121 34 24 0 0 chr3 70291618 70291659 -89308124 + AT_rich Low_complexity Low_complexity 1 41 0 4 1121 283 316 147 24 chr3 70292466 70292677 -89307106 - MLT1B LTR MaLR -153 237 1 4 1121 656 284 7 7 chr3 70292920 70293071 -89306712 + B3 SINE B2 3 151 -65 4 1121 246 32 0 0 chr3 70293071 70293102 -89306681 + (CA)n Simple_repeat Simple_repeat 1 31 0 4 1121 472 296 47 63 chr3 70293102 70293141 -89306642 + B2_Mm2 SINE B2 145 189 -6 4 1121 879 172 0 0 chr3 70293383 70293546 -89306237 + CT-rich Low_complexity Low_complexity 2 164 0 4 1121 719 216 0 0 chr3 70293546 70293680 -89306103 - B1_Mus1 SINE Alu -14 134 1 4 1121 967 277 82 25 chr3 70293968 70294323 -89305460 + MTE2a LTR MaLR 3 377 -2 4 1121 841 280 27 34 chr3 70294346 70294609 -89305174 + MLT1A0 LTR MaLR 105 365 0 4 1121 1136 95 6 0 chr3 70295124 70295292 -89304491 + (AGGGGG)n Simple_repeat Simple_repeat 1 169 0 4 1121 4615 238 35 18 chr3 70295305 70296204 -89303579 - Lx7 LINE L1 -352 7344 6415 4 1121 387 0 0 0 chr3 70296204 70296247 -89303536 + (TA)n Simple_repeat Simple_repeat 2 44 0 4 1121 4615 238 35 18 chr3 70296247 70296469 -89303314 - Lx7 LINE L1 -1282 6414 6204 4 1121 1299 330 51 60 chr3 70296643 70297288 -89302495 + MER82 DNA MER2_type 14 652 -1 4 1121 556 226 200 127 chr3 70297367 70297521 -89302262 + Lx7 LINE L1 7198 7321 -375 4 1121 1433 48 0 5 chr3 70297521 70297710 -89302073 + L1Md_F2 LINE L1 6389 6576 -6 4 1121 556 226 200 127 chr3 70297710 70298020 -89301763 + Lx7 LINE L1 7322 7696 0 4 1121 272 362 11 79 chr3 70298541 70298718 -89301065 + B4 SINE B4 10 174 -118 4 1121 304 273 25 49 chr3 70298769 70298850 -89300933 + RSINE1 SINE B4 87 165 0 4 1121 356 359 94 49 chr3 70298867 70299461 -89300322 + L1M5 LINE L1 2363 2983 -3163 4 1121 498 211 0 0 chr3 70299465 70299574 -89300209 + (TG)n Simple_repeat Simple_repeat 2 110 0 4 1121 297 0 0 0 chr3 70299868 70299901 -89299882 + (CA)n Simple_repeat Simple_repeat 2 34 0 4 1121 495 33 0 0 chr3 70300406 70300467 -89299316 + (TG)n Simple_repeat Simple_repeat 1 61 0 4 1121 242 277 110 73 chr3 70300634 70300743 -89299040 - B4A SINE B4 -173 119 7 4 1121 287 353 29 7 chr3 70301439 70301576 -89298207 + CT-rich Low_complexity Low_complexity 2 141 0 4 1121 297 299 0 140 chr3 70301671 70301807 -89297976 - PB1 SINE Alu 0 127 11 4 1121 21 0 0 0 chr3 70302418 70302439 -89297344 + AT_rich Low_complexity Low_complexity 1 21 0 4 1121 5708 62 26 3 chr3 70302439 70303193 -89296590 - L1Md_F2 LINE L1 -3 6579 5808 4 1121 504 132 136 23 chr3 70303354 70303486 -89296297 - Lx9 LINE L1 -1 7643 7497 4 1121 441 50 0 0 chr3 70303486 70303546 -89296237 + (CA)n Simple_repeat Simple_repeat 1 60 0 4 1121 524 261 30 0 chr3 70303573 70303707 -89296076 + Lx9 LINE L1 7210 7347 -297 4 1121 626 187 43 29 chr3 70303717 70303855 -89295928 + B1_Mur2 SINE Alu 9 148 -1 4 1121 430 228 10 19 chr3 70303887 70303990 -89295793 + Lx9 LINE L1 7333 7434 -210 4 1121 231 323 30 30 chr3 70304206 70304305 -89295478 + MIR SINE MIR 5 103 -159 4 1121 29 28 0 0 chr3 70305783 70305819 -89293964 + AT_rich Low_complexity Low_complexity 1 36 0 4 1121 252 0 0 0 chr3 70305837 70305865 -89293918 + (TG)n Simple_repeat Simple_repeat 1 28 0 4 1121 1050 8 0 0 chr3 70305865 70305983 -89293800 + (GA)n Simple_repeat Simple_repeat 1 119 0 5 1121 520 293 104 50 chr3 70305990 70306231 -89293552 - B4A SINE B4 0 292 39 5 1121 557 161 188 0 chr3 70306350 70306462 -89293321 - B1_Mur2 SINE Alu -7 142 10 5 1121 330 192 6 38 chr3 70306462 70306564 -89293219 - Lx2A LINE L1 -868 6140 6041 5 1121 5087 126 24 11 chr3 70306562 70307383 -89292400 + Lx2A LINE L1 6145 6976 -32 5 1121 325 151 0 34 chr3 70307376 70307465 -89292318 + Lx2A1 LINE L1 6923 7008 0 5 1121 281 292 100 0 chr3 70308377 70308497 -89291286 - MIRc SINE MIR -48 220 89 5 1121 213 365 94 18 chr3 70309105 70309275 -89290508 - MIRc SINE MIR -30 238 56 5 1121 453 284 41 76 chr3 70309305 70309450 -89290333 + MTEa LTR MaLR 1 140 -239 5 1121 181 307 98 43 chr3 70310413 70310505 -89289278 + L3 LINE CR1 4334 4430 -59 5 1121 2845 248 78 21 chr3 70310924 70311682 -89288101 + Lx6 LINE L1 6654 7454 -6 5 1121 787 170 27 0 chr3 70313428 70313575 -89286208 + Lx9 LINE L1 7290 7440 -204 5 1121 471 48 0 0 chr3 70313576 70313638 -89286145 + (TA)n Simple_repeat Simple_repeat 1 62 0 5 1121 655 283 54 0 chr3 70314397 70314563 -89285220 + B3 SINE B2 1 175 -41 5 1121 6141 52 0 3 chr3 70314569 70315335 -89284448 + L1Md_F2 LINE L1 5819 6582 0 5 1121 823 290 164 26 chr3 70315383 70315766 -89284017 - Lx7 LINE L1 -1119 6577 6142 5 1121 271 337 98 39 chr3 70315811 70316015 -89283768 - B3 SINE B2 0 216 1 5 1121 407 314 9 0 chr3 70317171 70317276 -89282507 + MLT1K LTR MaLR 1 106 -489 5 1121 239 370 126 57 chr3 70317285 70317635 -89282148 + MLT1K LTR MaLR 209 582 -13 5 1121 199 268 12 47 chr3 70318058 70318144 -89281639 - MIRb SINE MIR -29 239 157 5 1121 207 167 56 0 chr3 70318271 70318325 -89281458 + (TATATG)n Simple_repeat Simple_repeat 2 58 0 5 1121 2598 164 94 86 chr3 70318372 70318687 -89281096 + RMER6D LTR ERVK 1 368 -352 5 1121 393 22 0 0 chr3 70318687 70318733 -89281050 + (TG)n Simple_repeat Simple_repeat 2 47 0 5 1121 2598 164 94 86 chr3 70318733 70318934 -89280849 + RMER6D LTR ERVK 369 535 -185 5 1121 180 0 0 0 chr3 70318934 70318954 -89280829 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 5 1121 2598 164 94 86 chr3 70318954 70319064 -89280719 + RMER6D LTR ERVK 536 632 -88 5 1121 715 325 98 53 chr3 70321190 70321586 -89278197 - MTD LTR MaLR 0 419 6 5 1121 26 30 0 0 chr3 70322878 70322911 -89276872 + AT_rich Low_complexity Low_complexity 1 33 0 5 1121 941 264 53 19 chr3 70324374 70324637 -89275146 + Lx6 LINE L1 7162 7433 -27 5 1121 999 104 0 0 chr3 70325059 70325194 -89274589 + B1_Mus1 SINE Alu 1 135 -13 5 1121 282 56 0 0 chr3 70325194 70325230 -89274553 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 5 1121 536 68 0 13 chr3 70325353 70325428 -89274355 + B1_Mm SINE Alu 74 147 0 5 1121 222 261 0 80 chr3 70325476 70325551 -89274232 - PB1D10 SINE Alu -35 82 14 5 1121 270 236 0 0 chr3 70325671 70325743 -89274040 + Lx9 LINE L1 7521 7592 -52 5 1121 230 299 124 22 chr3 70326591 70326728 -89273055 + LTR40b LTR ERVL 15 165 -354 5 1121 1145 69 0 0 chr3 70326933 70327078 -89272705 - B1_Mus1 SINE Alu -2 146 2 5 1121 654 13 0 0 chr3 70327131 70327206 -89272577 + (TCTA)n Simple_repeat Simple_repeat 4 78 0 5 1121 308 250 34 11 chr3 70327443 70327532 -89272251 + LTR40b LTR ERVL 372 462 0 5 1121 1545 235 7 141 chr3 70327909 70328469 -89271314 - Lx7 LINE L1 0 7696 7212 5 1121 453 303 72 9 chr3 70328482 70328705 -89271078 - L1MA5 LINE L1 -471 5829 5593 5 1121 582 194 78 0 chr3 70328747 70328850 -89270933 - B3 SINE B2 -86 130 20 5 1121 381 207 0 0 chr3 70328908 70328990 -89270793 + (TG)n Simple_repeat Simple_repeat 2 83 0 5 1121 396 265 61 56 chr3 70329013 70329119 -89270664 - L1MA5 LINE L1 -738 5562 5454 5 1121 2303 66 119 11 chr3 70329119 70329471 -89270312 + RLTR10 LTR ERVK 1 390 0 5 1121 396 265 61 56 chr3 70329471 70329560 -89270223 - L1MA5 LINE L1 -847 5453 5366 5 1121 9225 147 10 9 chr3 70330205 70331713 -89268070 + Lx4A LINE L1 5566 7058 0 5 1121 432 0 0 0 chr3 70331832 70331880 -89267903 + (TTA)n Simple_repeat Simple_repeat 3 50 0 5 1121 826 249 40 28 chr3 70332719 70332967 -89266816 + Lx9 LINE L1 7234 7484 -160 5 1121 488 146 18 35 chr3 70332980 70333094 -89266689 + Lx9 LINE L1 7533 7644 0 5 1121 1147 216 19 15 chr3 70333326 70333589 -89266194 + RMER1C Other Other 1077 1340 -2 5 1121 28 48 0 0 chr3 70334590 70334632 -89265151 + AT_rich Low_complexity Low_complexity 1 42 0 5 1121 1089 264 72 39 chr3 70334850 70335181 -89264602 + MTE2a LTR MaLR 1 342 -37 5 1121 3165 290 181 32 chr3 70335186 70336542 -89263241 + MTE2b-int LTR MaLR 23 1580 0 5 1121 1269 256 38 8 chr3 70336544 70336910 -89262873 + MTE2b LTR MaLR 3 379 0 5 1121 220 273 0 52 chr3 70338067 70338125 -89261658 - RSINE1 SINE B4 -19 146 92 5 1121 883 218 119 50 chr3 70338144 70338488 -89261295 + RLTR20A2 LTR ERVK 1 447 -104 5 1121 1437 34 0 0 chr3 70338488 70338667 -89261116 + (TG)n Simple_repeat Simple_repeat 2 180 0 5 1121 637 230 5 134 chr3 70338667 70338795 -89260988 + RLTR20A2 LTR ERVK 448 551 0 5 1121 305 301 55 45 chr3 70339402 70339604 -89260179 - L1M4c LINE L1 -969 5407 5204 5 1121 192 40 0 0 chr3 70339611 70339636 -89260147 + (T)n Simple_repeat Simple_repeat 1 25 0 5 1121 1095 68 7 7 chr3 70339636 70339783 -89260000 - B1_Mm SINE Alu 0 147 1 5 1121 238 282 128 52 chr3 70339789 70340133 -89259650 - L1M4c LINE L1 -1403 4973 4604 5 1121 270 0 0 0 chr3 70341035 70341065 -89258718 + (TG)n Simple_repeat Simple_repeat 1 30 0 5 1121 360 310 17 17 chr3 70341093 70341211 -89258572 - B3A SINE B2 -68 130 13 5 1121 452 327 36 22 chr3 70341319 70341544 -89258239 - L1M4c LINE L1 -4556 1828 1601 5 1121 197 33 33 0 chr3 70341647 70341677 -89258106 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 5 1121 349 237 20 10 chr3 70342337 70342435 -89257348 - L1_Mur3 LINE L1 -3106 2774 2676 5 1121 641 346 16 34 chr3 70342425 70342867 -89256916 + L1_Mur3 LINE L1 1600 2033 -3847 5 1121 269 89 22 0 chr3 70342907 70342952 -89256831 + (TA)n Simple_repeat Simple_repeat 1 46 0 5 1121 2246 284 79 26 chr3 70342958 70344142 -89255641 + L1_Mur3 LINE L1 2447 3693 -2187 5 1121 1128 172 31 36 chr3 70345455 70345678 -89254105 - MTC LTR MaLR -4 417 196 5 1121 2535 84 8 0 chr3 70345692 70346047 -89253736 - Lx3_Mus LINE L1 0 7009 6652 5 1121 5169 76 15 10 chr3 70346047 70346814 -89252969 + Lx3_Mus LINE L1 5544 6302 -707 5 1121 910 251 33 0 chr3 70346815 70347026 -89252757 - MTC LTR MaLR -199 222 5 5 1121 29 0 0 0 chr3 70347036 70347065 -89252718 + AT_rich Low_complexity Low_complexity 1 29 0 5 1121 453 90 0 0 chr3 70347383 70347450 -89252333 + (CA)n Simple_repeat Simple_repeat 1 67 0 5 1121 297 75 0 0 chr3 70347838 70347878 -89251905 + (GGGAGA)n Simple_repeat Simple_repeat 4 43 0 5 1121 214 306 42 0 chr3 70347909 70347981 -89251802 - L2 LINE L2 -431 2988 2914 5 1121 374 243 0 0 chr3 70348417 70348491 -89251292 - ID4 SINE ID -7 76 3 5 1121 279 0 0 0 chr3 70348862 70348893 -89250890 + (T)n Simple_repeat Simple_repeat 1 31 0 5 1121 516 105 0 0 chr3 70349398 70349474 -89250309 + (TA)n Simple_repeat Simple_repeat 2 77 0 5 1121 1090 257 69 35 chr3 70349593 70349707 -89250076 - Lx9 LINE L1 -7 7637 7518 5 1121 198 103 0 0 chr3 70349707 70349736 -89250047 + (TG)n Simple_repeat Simple_repeat 1 29 0 5 1121 1090 257 69 35 chr3 70349736 70350020 -89249763 - Lx9 LINE L1 -127 7517 7218 5 1121 2048 90 33 20 chr3 70350020 70350325 -89249458 - RLTR27 LTR ERVK 0 309 1 5 1121 1090 257 69 35 chr3 70350325 70350405 -89249378 - Lx9 LINE L1 -427 7217 7142 5 1121 576 310 14 0 chr3 70351909 70352051 -89247732 + RSINE1 SINE B4 8 151 -14 5 1121 572 27 14 0 chr3 70353125 70353199 -89246584 + (GA)n Simple_repeat Simple_repeat 1 75 0 5 1121 519 264 0 0 chr3 70353222 70353328 -89246455 + Lx6 LINE L1 7048 7153 -307 5 1121 4667 189 18 6 chr3 70353403 70354284 -89245499 - Lx2A1 LINE L1 -5 7003 6112 5 1121 707 146 50 12 chr3 70354284 70354445 -89245338 + Lx2 LINE L1 5167 5332 -545 5 1121 1577 174 40 13 chr3 70354446 70354748 -89245035 + Lx LINE L1 6345 6654 0 5 1121 1808 116 4 0 chr3 70354759 70355036 -89244747 + Lx2 LINE L1 5827 6104 -893 5 1121 2951 175 39 0 chr3 70355951 70355997 -89243786 - RLTR20A2 LTR ERVK -45 533 481 5 1121 486 0 0 0 chr3 70355997 70356051 -89243732 + (CA)n Simple_repeat Simple_repeat 2 55 0 5 1121 2951 175 39 0 chr3 70356051 70356517 -89243266 - RLTR20A2 LTR ERVK -98 480 2 5 1121 1619 127 79 3 chr3 70356517 70356833 -89242950 - MYSERV16_I-int LTR ERVK -2 2324 1985 5 1121 457 314 96 45 chr3 70357079 70357423 -89242360 - MLT1A0 LTR MaLR -34 433 13 5 1121 385 284 63 22 chr3 70357742 70357883 -89241900 - MER5A DNA MER1_type -29 160 3 5 1121 342 0 0 0 chr3 70357995 70358033 -89241750 + (TG)n Simple_repeat Simple_repeat 1 38 0 5 1121 615 27 0 0 chr3 70358033 70358105 -89241678 + (GA)n Simple_repeat Simple_repeat 1 73 0 5 1121 355 284 137 28 chr3 70358813 70359023 -89240760 - MIRc SINE MIR -15 253 38 5 1121 225 0 0 0 chr3 70360015 70360040 -89239743 + (T)n Simple_repeat Simple_repeat 1 25 0 5 1121 258 179 98 49 chr3 70360051 70360133 -89239650 + LTR40c LTR ERVL 145 230 -235 5 1121 1197 78 0 0 chr3 70360742 70360895 -89238888 - L1_Mus3 LINE L1 -371 6267 6115 5 1121 919 169 112 5 chr3 70360895 70361091 -89238692 + Lx3A LINE L1 6763 6979 -2 5 1121 1059 103 0 0 chr3 70361104 70361259 -89238524 + (GA)n Simple_repeat Simple_repeat 2 156 0 5 1121 492 174 0 0 chr3 70362898 70362990 -89236793 + (TA)n Simple_repeat Simple_repeat 2 93 0 5 1121 192 286 18 18 chr3 70363808 70363865 -89235918 + L2c LINE L2 3246 3302 -85 5 1121 196 278 149 53 chr3 70365355 70365469 -89234314 + L2b LINE L2 3034 3158 -217 5 1121 984 72 7 0 chr3 70366222 70366360 -89233423 - L1_Mus2 LINE L1 -1 6565 6427 5 1121 279 352 69 23 chr3 70366546 70366677 -89233106 - B1F1 SINE Alu -6 143 7 5 1121 27 73 0 0 chr3 70366802 70366857 -89232926 + AT_rich Low_complexity Low_complexity 1 55 0 5 1121 23 54 0 0 chr3 70368505 70368542 -89231241 + AT_rich Low_complexity Low_complexity 1 37 0 5 1121 239 258 0 0 chr3 70368543 70368605 -89231178 + (TA)n Simple_repeat Simple_repeat 1 62 0 5 1121 1970 192 37 7 chr3 70368667 70369076 -89230707 + MTC LTR MaLR 1 421 0 5 1121 303 324 40 20 chr3 70369404 70369552 -89230231 - L2 LINE L2 -607 2812 2662 5 1121 221 303 13 13 chr3 70369575 70369652 -89230131 - B4 SINE B4 -200 92 16 5 1121 336 246 0 0 chr3 70369584 70369653 -89230130 - ID4_ SINE ID 0 83 15 5 1121 824 65 0 8 chr3 70370007 70370130 -89229653 - L1Md_F2 LINE L1 -4 6578 6457 6 1121 238 132 19 19 chr3 70370668 70370722 -89229061 + CT-rich Low_complexity Low_complexity 1 54 0 6 1121 305 333 77 49 chr3 70371226 70371409 -89228374 + Tigger5 DNA MER2_type 50 237 -2169 6 1121 900 277 52 0 chr3 70371766 70372015 -89227768 + B4 SINE B4 2 263 -29 6 1121 746 298 14 5 chr3 70371988 70372197 -89227586 + B3 SINE B2 6 216 0 6 1121 233 300 16 16 chr3 70372206 70372267 -89227516 + B4 SINE B4 216 276 -16 6 1121 184 350 90 16 chr3 70372560 70372682 -89227101 - L4 LINE RTE -187 1842 1712 6 1121 440 310 103 0 chr3 70373011 70373185 -89226598 + MER76 LTR ERVL 500 691 0 6 1121 3206 37 8 0 chr3 70375637 70376019 -89223764 + IAPEY_LTR LTR ERVK 1 385 0 6 1121 2823 157 14 30 chr3 70376019 70376698 -89223085 + IAPEy-int LTR ERVK 1 1058 -6455 6 1121 21860 45 3 5 chr3 70376698 70379414 -89220369 + IAPEy-int LTR ERVK 4804 7513 0 6 1121 3228 34 8 0 chr3 70379414 70379796 -89219987 + IAPEY_LTR LTR ERVK 1 385 0 6 1121 232 163 0 0 chr3 70380192 70380235 -89219548 - L1_Mm LINE L1 -1301 4582 4540 6 1121 183 129 0 0 chr3 70381579 70381610 -89218173 + (CAT)n Simple_repeat Simple_repeat 3 33 0 6 1121 498 98 0 0 chr3 70381626 70381708 -89218075 + (CTA)n Simple_repeat Simple_repeat 2 83 0 6 1121 294 98 0 0 chr3 70382190 70382241 -89217542 + (T)n Simple_repeat Simple_repeat 1 51 0 6 1121 228 167 0 0 chr3 70382410 70382458 -89217325 + (CA)n Simple_repeat Simple_repeat 2 49 0 6 1121 540 0 0 0 chr3 70382553 70382613 -89217170 + (TCTA)n Simple_repeat Simple_repeat 1 60 0 6 1121 242 193 18 0 chr3 70382614 70382671 -89217112 + (TA)n Simple_repeat Simple_repeat 2 59 0 6 1121 22 56 0 0 chr3 70382888 70382924 -89216859 + AT_rich Low_complexity Low_complexity 1 36 0 6 1121 21 0 0 0 chr3 70383112 70383133 -89216650 + AT_rich Low_complexity Low_complexity 1 21 0 6 1121 1442 173 14 64 chr3 70383214 70383560 -89216223 + RLTR15 LTR ERVK 1 329 -30 6 1121 382 270 0 11 chr3 70383592 70383682 -89216101 - B3A SINE B2 -87 111 23 6 1121 282 268 11 11 chr3 70384088 70384175 -89215608 + CT-rich Low_complexity Low_complexity 1 87 0 6 1121 255 155 198 77 chr3 70384220 70384258 -89215525 + RMER10A LTR ERVL 314 356 -86 6 1121 618 14 0 0 chr3 70384258 70384329 -89215454 + (TC)n Simple_repeat Simple_repeat 1 71 0 6 1121 531 31 0 0 chr3 70384329 70384394 -89215389 + (CA)n Simple_repeat Simple_repeat 1 65 0 6 1121 255 155 198 77 chr3 70384394 70384445 -89215338 + RMER10A LTR ERVL 357 414 -28 6 1121 21 0 0 0 chr3 70385636 70385657 -89214126 + AT_rich Low_complexity Low_complexity 1 21 0 6 1122 2844 21 27 0 chr3 70385925 70386262 -89213521 - L1Md_A LINE L1 0 6582 6237 6 1122 2879 34 8 8 chr3 70386339 70386693 -89213090 + L1Md_F2 LINE L1 6228 6581 -1 6 1122 2469 182 43 18 chr3 70386866 70387354 -89212429 + RLTR16 LTR ERVK 6 505 0 6 1122 248 131 0 21 chr3 70387364 70387411 -89212372 + (TG)n Simple_repeat Simple_repeat 1 46 0 6 1122 244 308 13 13 chr3 70387422 70387501 -89212282 - RSINE1 SINE B4 0 165 87 6 1122 216 293 141 39 chr3 70387533 70387611 -89212172 - B1F2 SINE Alu -59 90 5 6 1122 401 336 18 0 chr3 70387578 70387691 -89212092 - B4A SINE B4 -170 122 8 6 1122 237 65 0 0 chr3 70387781 70387812 -89211971 + (TC)n Simple_repeat Simple_repeat 2 32 0 6 1122 1097 301 41 43 chr3 70388924 70389292 -89210491 - MTEb LTR MaLR -3 376 10 6 1122 21 57 0 0 chr3 70390625 70390660 -89209123 + AT_rich Low_complexity Low_complexity 1 35 0 6 1122 21 36 0 0 chr3 70390812 70390840 -89208943 + AT_rich Low_complexity Low_complexity 1 28 0 6 1122 250 291 0 141 chr3 70391694 70391786 -89207997 - ID4_ SINE ID -2 81 3 6 1122 21 57 0 0 chr3 70392192 70392227 -89207556 + AT_rich Low_complexity Low_complexity 1 35 0 6 1122 238 309 158 65 chr3 70392511 70392726 -89207057 - MIR SINE MIR -21 241 7 6 1122 1157 61 0 7 chr3 70394187 70394336 -89205447 + B1_Mus1 SINE Alu 1 148 0 6 1122 289 0 49 0 chr3 70394336 70394377 -89205406 + (CAAAAA)n Simple_repeat Simple_repeat 6 48 0 6 1122 24 0 0 0 chr3 70394491 70394515 -89205268 + AT_rich Low_complexity Low_complexity 1 24 0 6 1122 288 0 0 0 chr3 70394539 70394571 -89205212 + (TTA)n Simple_repeat Simple_repeat 2 33 0 6 1122 1186 63 0 0 chr3 70394574 70394717 -89205066 - B1_Mm SINE Alu -4 143 1 6 1122 222 300 0 14 chr3 70394829 70394900 -89204883 + T-rich Low_complexity Low_complexity 4 73 0 6 1122 994 191 83 0 chr3 70395672 70395876 -89203907 - URR1A DNA MER1_type -5 221 1 6 1122 21 0 0 0 chr3 70396680 70396701 -89203082 + AT_rich Low_complexity Low_complexity 1 21 0 6 1122 309 296 0 0 chr3 70396925 70396996 -89202787 - ID4 SINE ID -11 72 2 6 1122 207 111 28 0 chr3 70397180 70397216 -89202567 + (TTAA)n Simple_repeat Simple_repeat 4 40 0 6 1122 243 0 0 0 chr3 70398290 70398317 -89201466 + (CA)n Simple_repeat Simple_repeat 2 28 0 6 1122 348 24 0 0 chr3 70398317 70398357 -89201426 + (GA)n Simple_repeat Simple_repeat 2 42 0 6 1122 326 322 0 84 chr3 70399838 70399933 -89199850 + BC1_Mm scRNA scRNA 2 88 -64 6 1122 520 253 94 58 chr3 70399936 70400302 -89199481 + L1MA6 LINE L1 5686 6084 -207 6 1122 22 0 0 0 chr3 70400393 70400415 -89199368 + AT_rich Low_complexity Low_complexity 1 22 0 6 1122 184 77 51 0 chr3 70400472 70400511 -89199272 + (TA)n Simple_repeat Simple_repeat 2 42 0 6 1122 279 196 42 12 chr3 70400534 70400699 -89199084 + (TA)n Simple_repeat Simple_repeat 1 170 0 6 1122 26 64 0 0 chr3 70400786 70400833 -89198950 + AT_rich Low_complexity Low_complexity 1 47 0 6 1122 648 0 0 0 chr3 70401266 70401338 -89198445 + (TA)n Simple_repeat Simple_repeat 1 72 0 6 1122 288 0 0 0 chr3 70401338 70401369 -89198414 + (GA)n Simple_repeat Simple_repeat 2 33 0 6 1122 1262 204 183 31 chr3 70401850 70401948 -89197835 + RLTR40 LTR ERVK 3 102 -715 6 1122 6168 74 10 6 chr3 70401948 70402767 -89197016 + L1_Mus2 LINE L1 5745 6566 0 6 1122 1262 204 183 31 chr3 70402767 70403083 -89196700 + RLTR40 LTR ERVK 103 480 -337 6 1122 2506 214 47 35 chr3 70403091 70403750 -89196033 - RMER6C LTR ERVK -21 669 3 6 1122 240 243 42 28 chr3 70403783 70403855 -89195928 + RLTR40 LTR ERVK 514 586 -231 6 1122 537 227 163 104 chr3 70403876 70404097 -89195686 + RLTR40 LTR ERVK 570 803 -14 6 1122 371 301 19 44 chr3 70405173 70405333 -89194450 - ORR1A4 LTR MaLR -8 321 166 6 1122 1717 172 14 45 chr3 70405227 70405586 -89194197 - RMER10B LTR ERVL -50 348 1 6 1122 17793 87 13 19 chr3 70405842 70407192 -89192591 - L1_Mus2 LINE L1 0 6566 5223 6 1122 5876 58 13 8 chr3 70407192 70407959 -89191824 - L1Md_F2 LINE L1 -1 6581 5811 6 1122 17793 121 12 25 chr3 70407959 70410022 -89189761 - L1_Mus2 LINE L1 -661 5222 3182 6 1122 252 0 0 0 chr3 70410022 70410050 -89189733 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 6 1122 17793 121 12 25 chr3 70410050 70410232 -89189551 - L1_Mus2 LINE L1 -2702 3181 3013 6 1122 1185 220 72 11 chr3 70410233 70410509 -89189274 - ORR1B1 LTR MaLR -42 352 60 6 1122 492 199 43 87 chr3 70410506 70410644 -89189139 + ORR1A4-int LTR MaLR 572 703 -1260 6 1122 995 250 58 12 chr3 70410556 70410799 -89188984 + MT2B LTR ERVL 6 259 -342 6 1122 1043 234 14 17 chr3 70410803 70411094 -89188689 + ORR1A4-int LTR MaLR 720 1009 -954 6 1122 4128 65 19 0 chr3 70411094 70411631 -89188152 + L1Md_F3 LINE L1 5040 5586 -297 6 1122 8101 37 8 2 chr3 70411631 70412623 -89187160 + L1Md_F3 LINE L1 5587 6584 0 6 1122 6775 86 1 3 chr3 70412632 70413556 -89186227 + L1Md_F2 LINE L1 4664 5585 -298 6 1122 7467 74 4 7 chr3 70413557 70414553 -89185230 + L1Md_F2 LINE L1 5587 6579 -3 6 1122 4588 153 32 123 chr3 70414554 70415582 -89184201 + ORR1A4-int LTR MaLR 1030 1963 0 6 1122 1801 158 9 53 chr3 70415582 70415922 -89183861 + ORR1A4 LTR MaLR 1 325 -4 6 1122 1062 76 7 14 chr3 70416244 70416390 -89183393 + B1_Mus2 SINE Alu 2 146 -1 6 1122 798 11 0 0 chr3 70416392 70416483 -89183300 + (GA)n Simple_repeat Simple_repeat 2 92 0 6 1122 340 262 12 12 chr3 70417764 70417845 -89181938 - ID4_ SINE ID -1 82 2 6 1122 275 96 19 0 chr3 70418065 70418117 -89181666 + (CAAAA)n Simple_repeat Simple_repeat 1 53 0 6 1122 3101 158 30 50 chr3 70418158 70418759 -89181024 + Lx4B LINE L1 6462 7050 -8 6 1122 322 255 61 0 chr3 70419357 70419455 -89180328 + MTE2b LTR MaLR 1 104 -275 6 1122 362 21 21 0 chr3 70419458 70419505 -89180278 + (CAA)n Simple_repeat Simple_repeat 2 49 0 6 1122 494 16 0 16 chr3 70419505 70419569 -89180214 + (CAAAC)n Simple_repeat Simple_repeat 4 66 0 6 1122 738 294 16 21 chr3 70419569 70419760 -89180023 + MTE2b LTR MaLR 120 309 -70 6 1122 207 0 0 0 chr3 70419795 70419818 -89179965 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 6 1122 285 284 15 2 chr3 70419857 70419949 -89179834 + MTE2b LTR MaLR 287 379 0 6 1122 22 0 0 0 chr3 70421521 70421543 -89178240 + AT_rich Low_complexity Low_complexity 1 22 0 6 1122 27 29 0 0 chr3 70421903 70421937 -89177846 + AT_rich Low_complexity Low_complexity 1 34 0 6 1122 480 112 44 44 chr3 70421965 70422124 -89177659 + (TAGA)n Simple_repeat Simple_repeat 3 161 0 6 1122 491 302 69 86 chr3 70422259 70422567 -89177216 - MTE2a LTR MaLR -52 327 35 6 1122 1110 82 7 0 chr3 70422739 70422885 -89176898 + B1_Mus1 SINE Alu 2 148 0 6 1122 281 68 23 0 chr3 70422885 70422929 -89176854 + (CAAAA)n Simple_repeat Simple_repeat 1 45 0 6 1122 1134 23 0 0 chr3 70422962 70423095 -89176688 + (CA)n Simple_repeat Simple_repeat 2 134 0 6 1122 260 104 0 40 chr3 70423261 70423311 -89176472 + (CAAAA)n Simple_repeat Simple_repeat 2 49 0 6 1122 329 309 82 68 chr3 70423311 70423457 -89176326 + ID_B1 SINE B4 77 224 0 6 1122 1405 326 126 18 chr3 70423484 70424206 -89175577 + Lx8 LINE L1 6512 7311 -162 6 1122 2163 216 30 4 chr3 70424224 70424697 -89175086 + Lx9 LINE L1 6961 7445 -199 6 1122 241 200 0 0 chr3 70424695 70424740 -89175043 - Lx LINE L1 -936 4947 4903 6 1122 5253 129 14 1 chr3 70424737 70425998 -89173785 + Lx LINE L1 4976 6253 -401 6 1122 479 135 41 10 chr3 70425998 70426095 -89173688 + Lx LINE L1 6542 6641 -13 6 1122 26 0 0 0 chr3 70426222 70426248 -89173535 + AT_rich Low_complexity Low_complexity 1 26 0 6 1122 474 205 7 64 chr3 70426249 70426390 -89173393 + Lx9 LINE L1 7512 7644 0 6 1122 36 40 0 0 chr3 70426927 70426977 -89172806 + AT_rich Low_complexity Low_complexity 1 50 0 6 1122 297 159 0 0 chr3 70427963 70428026 -89171757 + CT-rich Low_complexity Low_complexity 2 64 0 6 1122 1758 188 21 85 chr3 70428122 70428500 -89171283 + ORR1B1 LTR MaLR 41 394 0 6 1122 1173 302 148 41 chr3 70428522 70429236 -89170547 - Lx8 LINE L1 -420 7053 6263 6 1122 354 121 0 0 chr3 70429913 70429979 -89169804 + (TGG)n Simple_repeat Simple_repeat 3 68 0 6 1122 378 311 6 96 chr3 70429979 70430157 -89169626 - RSINE1 SINE B4 -1 164 3 6 1122 244 208 10 10 chr3 70430766 70430863 -89168920 + (TA)n Simple_repeat Simple_repeat 2 98 0 6 1122 344 298 147 16 chr3 70431009 70431193 -89168590 - MER74B LTR ERVL -339 283 76 7 1122 3448 124 40 11 chr3 70431269 70431823 -89167960 + Lx LINE L1 6074 6643 -11 7 1122 225 0 0 0 chr3 70431823 70431848 -89167935 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 7 1122 270 56 0 0 chr3 70432434 70432470 -89167313 + (T)n Simple_repeat Simple_repeat 1 36 0 7 1122 247 331 0 17 chr3 70433077 70433252 -89166531 + (CATATA)n Simple_repeat Simple_repeat 5 176 0 7 1122 319 34 0 161 chr3 70433445 70433656 -89166127 + (CAGTA)n Simple_repeat Simple_repeat 2 178 0 7 1122 3419 191 55 13 chr3 70434254 70434939 -89164844 + ORR1B2-int LTR MaLR 791 1504 -5 7 1122 1755 196 46 0 chr3 70434944 70435270 -89164513 + ORR1B2 LTR MaLR 1 341 -26 7 1122 21 0 0 0 chr3 70435949 70435970 -89163813 + AT_rich Low_complexity Low_complexity 1 21 0 7 1122 21 36 0 0 chr3 70437334 70437362 -89162421 + AT_rich Low_complexity Low_complexity 1 28 0 7 1122 347 291 142 6 chr3 70437368 70437544 -89162239 - MER2 DNA MER2_type -126 219 20 7 1122 1988 55 0 8 chr3 70437715 70437969 -89161814 - L1Md_F2 LINE L1 -13 6569 6318 7 1122 909 315 135 17 chr3 70438082 70438623 -89161160 - MER63C DNA AcHobo -47 883 279 7 1122 24 0 0 0 chr3 70438775 70438799 -89160984 + AT_rich Low_complexity Low_complexity 1 24 0 7 1122 1039 126 78 0 chr3 70438973 70439140 -89160643 + B2_Mm2 SINE B2 1 180 -15 7 1122 285 51 0 0 chr3 70439142 70439181 -89160602 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 7 1122 1055 104 0 7 chr3 70439186 70439331 -89160452 + B1_Mus1 SINE Alu 5 148 0 7 1122 527 85 0 12 chr3 70439339 70439422 -89160361 + (GAAA)n Simple_repeat Simple_repeat 2 83 0 7 1122 7757 151 27 24 chr3 70439425 70441009 -89158774 + Lx2 LINE L1 5397 6984 -13 7 1122 191 222 12 0 chr3 70441083 70441164 -89158619 + CT-rich Low_complexity Low_complexity 1 82 0 7 1122 311 210 104 7 chr3 70441796 70441940 -89157843 - Lx9 LINE L1 -1 7643 7486 7 1122 273 340 18 9 chr3 70442264 70442374 -89157409 - Tigger12c DNA MER2_type -619 115 5 7 1122 337 289 141 64 chr3 70443719 70444006 -89155777 - ORR1E LTR MaLR -3 376 32 7 1122 841 172 167 30 chr3 70444816 70445014 -89154769 - URR1B DNA MER1_type 0 225 1 7 1122 253 208 13 13 chr3 70445765 70445843 -89153940 + CT-rich Low_complexity Low_complexity 3 80 0 7 1122 441 319 94 12 chr3 70446855 70447026 -89152757 + B3 SINE B2 4 188 -28 7 1122 1070 50 93 0 chr3 70447099 70447260 -89152523 - L1Md_F3 LINE L1 -1 6583 6408 7 1122 2948 152 8 21 chr3 70447558 70448074 -89151709 - Lx2 LINE L1 0 6997 6489 7 1122 860 52 0 8 chr3 70448074 70448142 -89151641 + (TTC)n Simple_repeat Simple_repeat 1 68 0 7 1122 1518 22 0 0 chr3 70448142 70448320 -89151463 + (TTCTCC)n Simple_repeat Simple_repeat 3 180 0 7 1122 860 52 0 8 chr3 70448320 70448368 -89151415 + (TTC)n Simple_repeat Simple_repeat 2 48 0 7 1122 1081 126 0 11 chr3 70448368 70448545 -89151238 - L1Md_F2 LINE L1 -13 6569 6395 7 1122 2937 18 0 0 chr3 70448545 70448886 -89150897 + L1Md_F2 LINE L1 5717 6057 -525 7 1122 3053 129 2 12 chr3 70448885 70449370 -89150413 - Lx2 LINE L1 -494 6503 6024 7 1122 2694 135 10 49 chr3 70449371 70450001 -89149782 + Lx2 LINE L1 5417 6018 -979 7 1122 4542 60 30 5 chr3 70450414 70451015 -89148768 - L1Md_F2 LINE L1 0 6582 5967 7 1122 378 214 0 0 chr3 70451055 70451125 -89148658 - B3A SINE B2 -128 70 1 7 1122 190 359 164 27 chr3 70451531 70451866 -89147917 - L2 LINE L2 -2767 652 272 7 1122 817 295 9 5 chr3 70452312 70452523 -89147260 + ID_B1 SINE B4 6 217 -7 7 1122 246 120 58 39 chr3 70452477 70452529 -89147254 + PB1D9 SINE Alu 65 117 -3 7 1122 203 133 22 22 chr3 70452825 70452871 -89146912 + (TA)n Simple_repeat Simple_repeat 2 47 0 7 1122 22 35 0 0 chr3 70453361 70453390 -89146393 + AT_rich Low_complexity Low_complexity 1 29 0 7 1122 329 312 39 0 chr3 70454276 70454510 -89145273 + Lx9 LINE L1 7401 7643 -1 7 1122 681 269 43 34 chr3 70455098 70455306 -89144477 + B3 SINE B2 1 210 -6 7 1122 22 56 0 0 chr3 70456196 70456232 -89143551 + AT_rich Low_complexity Low_complexity 1 36 0 7 1122 716 175 41 24 chr3 70456267 70456437 -89143346 - Lx9 LINE L1 -159 7485 7313 7 1122 323 348 72 7 chr3 70456468 70456607 -89143176 - B1F SINE Alu -1 148 1 7 1122 22 56 0 0 chr3 70456615 70456651 -89143132 + AT_rich Low_complexity Low_complexity 1 36 0 7 1122 219 167 21 0 chr3 70456762 70456810 -89142973 + (TTG)n Simple_repeat Simple_repeat 2 50 0 7 1122 267 79 0 0 chr3 70456957 70456995 -89142788 - Lx3A LINE L1 -644 5242 5205 7 1122 8847 115 12 6 chr3 70456993 70458715 -89141068 + Lx3A LINE L1 5248 6976 -5 7 1122 2362 214 99 13 chr3 70458816 70459141 -89140642 + RMER6C LTR ERVK 1 334 -356 7 1122 210 91 0 0 chr3 70459141 70459174 -89140609 + (CA)n Simple_repeat Simple_repeat 2 34 0 7 1122 2362 214 99 13 chr3 70459174 70459483 -89140300 + RMER6C LTR ERVK 335 689 -1 7 1122 470 312 41 7 chr3 70459487 70459632 -89140151 + Lx8 LINE L1 7105 7254 -219 7 1122 6257 84 8 0 chr3 70459893 70460593 -89139190 - L1_Mus1 LINE L1 -2 6565 5861 7 1122 405 0 0 0 chr3 70460593 70460638 -89139145 + (TG)n Simple_repeat Simple_repeat 1 45 0 7 1122 6257 84 8 0 chr3 70460638 70460765 -89139018 - L1_Mus1 LINE L1 -707 5860 5732 7 1122 8454 111 8 1 chr3 70460759 70461987 -89137796 + L1_Mus1 LINE L1 4508 5744 -139 7 1122 1083 136 27 21 chr3 70462060 70462248 -89137535 - B2_Mm2 SINE B2 -6 189 1 7 1122 21 0 0 0 chr3 70462785 70462806 -89136977 + AT_rich Low_complexity Low_complexity 1 21 0 7 1122 225 65 0 0 chr3 70462908 70462939 -89136844 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 7 1122 285 294 84 47 chr3 70463220 70463327 -89136456 + RSINE1 SINE B4 3 113 -52 7 1122 258 32 0 0 chr3 70463344 70463375 -89136408 + (CAT)n Simple_repeat Simple_repeat 1 31 0 7 1122 698 22 33 0 chr3 70463993 70464083 -89135700 + (TATATG)n Simple_repeat Simple_repeat 2 94 0 7 1122 4641 116 19 1 chr3 70464217 70464935 -89134848 - L1_Mus3 LINE L1 -4 6634 5904 7 1122 313 281 107 30 chr3 70464949 70465118 -89134665 - MTE-int LTR MaLR -204 1376 1195 7 1122 393 390 27 11 chr3 70465586 70465770 -89134013 - MTE-int LTR MaLR -1144 436 250 7 1122 6616 202 52 18 chr3 70465784 70465978 -89133805 - Lx5 LINE L1 -6 7044 6822 7 1122 201 74 0 0 chr3 70465978 70466005 -89133778 + (CAGG)n Simple_repeat Simple_repeat 1 27 0 7 1122 6616 193 38 13 chr3 70466005 70467631 -89132152 - Lx5 LINE L1 -229 6821 5184 7 1122 669 244 27 49 chr3 70467649 70467834 -89131949 + RLTR20A1 LTR ERVK 371 551 0 7 1122 25 0 0 0 chr3 70467856 70467881 -89131902 + AT_rich Low_complexity Low_complexity 1 25 0 7 1122 2141 194 74 38 chr3 70468582 70469196 -89130587 + MYSERV16_I-int LTR ERVK 1 525 -1801 7 1122 5107 130 47 17 chr3 70469196 70470073 -89129710 + RMER17A2 LTR ERVK 1 903 -3 7 1122 5594 155 49 35 chr3 70470073 70471495 -89128288 + MYSERV16_I-int LTR ERVK 526 2664 -178 7 1122 1897 247 66 41 chr3 70471546 70472108 -89127675 + RLTR20A2 LTR ERVK 3 578 0 7 1122 6130 196 17 147 chr3 70472108 70472594 -89127189 - Lx5 LINE L1 -692 5188 4717 7 1122 486 33 0 0 chr3 70472594 70472654 -89127129 + (TTA)n Simple_repeat Simple_repeat 1 60 0 7 1122 6130 196 17 147 chr3 70472654 70473152 -89126631 - Lx5 LINE L1 -1164 4716 4221 7 1122 1081 112 0 12 chr3 70473152 70473314 -89126469 + B2_Mm2 SINE B2 2 161 -34 7 1122 297 0 0 0 chr3 70473315 70473348 -89126435 + (TAAA)n Simple_repeat Simple_repeat 2 34 0 7 1122 6130 196 17 147 chr3 70473348 70474150 -89125633 - Lx5 LINE L1 -1661 4219 3490 7 1122 1080 204 4 0 chr3 70474157 70474382 -89125401 - Lx5 LINE L1 -2660 3217 2992 7 1122 1072 111 76 27 chr3 70474389 70474574 -89125209 - B2_Mm2 SINE B2 0 195 2 7 1122 2485 132 31 19 chr3 70474891 70475307 -89124476 + MTC LTR MaLR 1 421 0 7 1122 490 273 149 0 chr3 70476047 70476201 -89123582 - Lx8 LINE L1 -928 6545 6369 7 1122 1316 88 22 0 chr3 70476287 70476468 -89123315 - B2_Mm1t SINE B2 -7 186 2 7 1122 41143 6 0 0 chr3 70476899 70483065 -89116718 - L1Md_A LINE L1 0 6582 416 7 1122 3440 5 0 0 chr3 70483076 70483484 -89116299 - L1Md_A LINE L1 0 6582 6192 7 1122 3683 2 0 0 chr3 70483484 70483894 -89115889 + L1Md_A LINE L1 5726 6135 -447 7 1122 646 168 0 15 chr3 70483896 70484029 -89115754 - Lx5 LINE L1 -2879 2998 2868 7 1122 7900 54 4 0 chr3 70484023 70485003 -89114780 - L1Md_F2 LINE L1 -12 6570 5587 7 1122 1341 196 4 7 chr3 70485015 70485293 -89114490 - Lx5 LINE L1 -2996 2881 2605 7 1122 308 252 36 0 chr3 70485563 70485674 -89114109 - Lx5 LINE L1 -3430 2447 2333 7 1122 385 164 14 0 chr3 70485650 70485723 -89114060 - Lx3A LINE L1 -946 6035 5962 7 1122 447 202 0 21 chr3 70485719 70485815 -89113968 + L1_Mur2 LINE L1 2788 2881 -2996 7 1122 937 61 0 0 chr3 70485827 70485941 -89113842 + L1Md_F3 LINE L1 5587 5700 -884 7 1122 4264 111 12 3 chr3 70485937 70486671 -89113112 - Lx3A LINE L1 -1022 5959 5219 7 1122 682 214 40 6 chr3 70486672 70486846 -89112937 - Lx5 LINE L1 -6511 1217 1038 7 1122 21 0 0 0 chr3 70487240 70487261 -89112522 + AT_rich Low_complexity Low_complexity 1 21 0 7 1122 670 354 39 66 chr3 70487633 70487996 -89111787 - MER31A LTR ERV1 -122 363 9 7 1122 1031 284 121 39 chr3 70488799 70489286 -89110497 + RMER5 LTR ERV1 1 527 -7 7 1122 24 53 0 0 chr3 70489351 70489389 -89110394 + AT_rich Low_complexity Low_complexity 1 38 0 7 1122 33 66 0 0 chr3 70490165 70490226 -89109557 + AT_rich Low_complexity Low_complexity 1 61 0 7 1122 21 57 0 0 chr3 70490272 70490307 -89109476 + AT_rich Low_complexity Low_complexity 1 35 0 7 1122 600 14 0 0 chr3 70490339 70490408 -89109375 + (AATTG)n Simple_repeat Simple_repeat 2 70 0 7 1122 225 273 11 54 chr3 70490781 70490874 -89108909 - RMER4A LTR ERVK -356 110 22 7 1122 38183 15 0 9 chr3 70491648 70497696 -89102087 + L1Md_A LINE L1 1 5586 -297 7 1122 8868 10 1 0 chr3 70497696 70498691 -89101092 + L1Md_A LINE L1 5587 6582 0 7 1122 222 62 0 0 chr3 70499031 70499063 -89100720 + (T)n Simple_repeat Simple_repeat 1 32 0 7 1122 312 292 174 0 chr3 70499335 70499496 -89100287 - MER68 LTR ERVL -312 251 63 7 1122 2493 52 3 0 chr3 70500055 70500365 -89099418 + L1Md_F2 LINE L1 6267 6577 -5 1 1122 400 381 19 58 chr3 70500388 70500647 -89099136 - B4A SINE B4 -28 264 16 2 1122 22 35 0 0 chr3 70500726 70500755 -89099028 + AT_rich Low_complexity Low_complexity 1 29 0 3 1122 346 309 92 3 chr3 70501134 70501363 -89098420 - L1_Mur3 LINE L1 -703 5597 5314 4 1122 1109 96 0 6 chr3 70501369 70501537 -89098246 + L1_Mus2 LINE L1 6398 6564 -2 5 1122 563 307 135 14 chr3 70501930 70502211 -89097572 - RMER5 LTR ERV1 -41 493 179 6 1122 410 301 18 0 chr3 70502245 70502408 -89097375 + L1_Mur2 LINE L1 4391 4556 -1321 7 1122 422 313 52 77 chr3 70502772 70503250 -89096533 - L1M4c LINE L1 -3965 2584 1956 8 1122 440 218 22 44 chr3 70503318 70503500 -89096283 + RMER17C LTR ERVK 96 273 -137 9 1122 5458 206 55 13 chr3 70503541 70504825 -89094958 - Lx7 LINE L1 -1597 6099 4735 1 1122 645 86 0 0 chr3 70504825 70504918 -89094865 + (TTCC)n Simple_repeat Simple_repeat 1 93 0 1 1122 5458 200 52 11 chr3 70504918 70505063 -89094720 - Lx7 LINE L1 -1146 4734 4587 1 1122 351 0 0 0 chr3 70506347 70506386 -89093397 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 1122 189 0 0 0 chr3 70506386 70506406 -89093377 + (GA)n Simple_repeat Simple_repeat 2 22 0 1 1122 857 288 86 17 chr3 70508155 70508515 -89091268 - Lx8 LINE L1 -296 7177 6793 1 1122 689 302 93 32 chr3 70508629 70509000 -89090783 - RLTR18 LTR ERVK -1 615 112 1 1122 631 282 27 32 chr3 70509142 70509329 -89090454 - RLTR18 LTR ERVK -430 186 1 1 1122 230 293 11 68 chr3 70509951 70509964 -89089819 - MT2A LTR ERVL -129 472 462 1 1122 216 0 0 0 chr3 70509964 70509988 -89089795 + (CA)n Simple_repeat Simple_repeat 2 25 0 1 1122 1070 224 50 119 chr3 70509988 70510118 -89089665 - MT2A LTR ERVL -231 302 191 1 1122 204 40 0 0 chr3 70510118 70510143 -89089640 + (CAA)n Simple_repeat Simple_repeat 2 26 0 1 1122 1070 199 64 138 chr3 70510143 70510373 -89089410 - MT2A LTR ERVL -343 190 1 1 1122 2945 35 0 0 chr3 70510404 70510750 -89089033 - ORR1A0 LTR MaLR 0 346 1 2 1122 331 326 120 17 chr3 70510821 70511055 -89088728 + Lx7 LINE L1 5649 5906 -1790 2 1122 365 190 10 0 chr3 70511067 70511167 -89088616 + (TG)n Simple_repeat Simple_repeat 1 101 0 2 1122 4661 258 67 26 chr3 70511412 70512703 -89087080 - Lx6 LINE L1 -1 7459 6116 2 1122 715 172 61 0 chr3 70512702 70512882 -89086901 - L1_Mur3 LINE L1 -2485 3395 3205 2 1122 2792 96 22 19 chr3 70512891 70513299 -89086484 - MT2C_Mm LTR ERVL -65 519 1 2 1122 260 26 0 26 chr3 70513299 70513338 -89086445 - MERVL_2A-int LTR ERVL 0 5485 5448 2 1122 374 111 26 53 chr3 70513338 70513414 -89086369 - ORR1A3-int LTR MaLR -1323 640 567 2 1122 946 169 0 12 chr3 70513510 70513672 -89086111 - MERVL_2A-int LTR ERVL -276 5485 5326 2 1122 954 209 28 60 chr3 70513673 70513958 -89085825 - L1_Mur3 LINE L1 -2649 3231 2956 2 1122 1009 231 20 25 chr3 70513966 70514289 -89085494 - L1_Mur3 LINE L1 -6507 1221 919 2 1122 241 328 26 9 chr3 70514504 70514618 -89085165 - L1_Mur3 LINE L1 -7489 239 124 2 1122 312 280 59 8 chr3 70514617 70514736 -89085047 - L1_Mur3 LINE L1 -7405 307 183 2 1122 230 284 48 24 chr3 70514797 70514880 -89084903 - Lx9 LINE L1 -503 7141 7057 2 1122 502 320 59 73 chr3 70514990 70515293 -89084490 - Lx9 LINE L1 -716 6928 6630 2 1122 1688 233 22 11 chr3 70515293 70515657 -89084126 + RLTR30 LTR ERV1 1 368 -11 2 1122 180 97 0 0 chr3 70515669 70515700 -89084083 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 3 140 311 302 116 23 chr3 70516672 70516801 -89082982 - HAL1-3A_ME LINE L1 -434 2424 2284 3 1123 377 284 0 56 chr3 70516810 70516918 -89082865 - PB1 SINE Alu -8 119 18 3 1123 369 0 0 0 chr3 70517068 70517109 -89082674 + (CCA)n Simple_repeat Simple_repeat 3 43 0 3 1123 234 0 0 0 chr3 70517109 70517135 -89082648 + (CAA)n Simple_repeat Simple_repeat 2 27 0 3 1123 21 0 0 0 chr3 70517391 70517412 -89082371 + AT_rich Low_complexity Low_complexity 1 21 0 3 1123 3485 25 0 0 chr3 70517432 70517828 -89081955 - MTA_Mm LTR MaLR 0 396 1 3 1123 9466 19 4 0 chr3 70517828 70518922 -89080861 - MTA_Mm-int LTR MaLR 0 1098 1 3 1123 3371 38 0 0 chr3 70518922 70519314 -89080469 - MTA_Mm LTR MaLR 0 396 5 3 1123 429 20 0 0 chr3 70519314 70519364 -89080419 + (TA)n Simple_repeat Simple_repeat 1 50 0 3 1123 351 0 0 0 chr3 70519448 70519487 -89080296 + (TCTG)n Simple_repeat Simple_repeat 2 40 0 3 1123 242 0 61 0 chr3 70520369 70520402 -89079381 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 3 1123 1818 167 53 55 chr3 70521574 70521616 -89078167 + RMER10B LTR ERVL 1 41 -357 4 1123 594 75 0 0 chr3 70521616 70521696 -89078087 + (TA)n Simple_repeat Simple_repeat 1 80 0 4 1123 360 0 0 0 chr3 70521696 70521735 -89078048 + (GA)n Simple_repeat Simple_repeat 2 41 0 4 1123 1818 167 53 55 chr3 70521735 70522090 -89077693 + RMER10B LTR ERVL 42 397 -1 4 1123 240 344 39 47 chr3 70522160 70522288 -89077495 - B1_Mm SINE Alu -9 138 12 4 1123 35308 37 0 1 chr3 70522532 70527981 -89071802 + L1Md_Gf LINE L1 66 5589 -297 4 1123 8936 6 0 3 chr3 70527981 70528980 -89070803 + L1Md_T LINE L1 5587 6582 0 4 1123 35308 43 0 1 chr3 70528980 70528992 -89070791 + L1Md_Gf LINE L1 5590 5600 -286 4 1123 211 361 28 0 chr3 70529392 70529464 -89070319 - PB1D10 SINE Alu -6 111 38 4 1123 399 41 0 0 chr3 70529609 70529658 -89070125 + (CATA)n Simple_repeat Simple_repeat 4 52 0 4 1123 258 383 70 0 chr3 70529778 70529893 -89069890 - PB1 SINE Alu -4 123 1 4 1123 215 93 23 0 chr3 70530008 70530051 -89069732 + (TTG)n Simple_repeat Simple_repeat 2 45 0 4 1123 1009 85 7 0 chr3 70530063 70530204 -89069579 - B1_Mus2 SINE Alu -5 142 1 5 1123 22 0 0 0 chr3 70530729 70530751 -89069032 + AT_rich Low_complexity Low_complexity 1 22 0 5 1123 219 69 0 0 chr3 70531261 70531290 -89068493 + (T)n Simple_repeat Simple_repeat 1 29 0 5 1123 243 0 0 0 chr3 70531327 70531354 -89068429 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 5 1123 447 155 0 0 chr3 70534257 70534341 -89065442 + (TG)n Simple_repeat Simple_repeat 2 85 0 5 1123 267 318 23 12 chr3 70534359 70534445 -89065338 - PB1D10 SINE Alu -28 89 3 5 1123 237 333 52 10 chr3 70534445 70534456 -89065327 - ID_B1 SINE B4 -54 170 70 5 1123 411 21 0 0 chr3 70534521 70534569 -89065214 + (TA)n Simple_repeat Simple_repeat 1 48 0 5 1123 25 75 0 0 chr3 70534692 70534745 -89065038 + AT_rich Low_complexity Low_complexity 1 53 0 5 1123 27 0 0 0 chr3 70536120 70536147 -89063636 + AT_rich Low_complexity Low_complexity 1 27 0 5 1123 192 77 0 0 chr3 70536653 70536679 -89063104 + (A)n Simple_repeat Simple_repeat 1 26 0 6 1123 1199 161 23 14 chr3 70537368 70537588 -89062195 + URR1A DNA MER1_type 5 226 0 6 1123 268 381 19 0 chr3 70538021 70538126 -89061657 + MER5A DNA MER1_type 83 189 0 6 1123 206 297 0 0 chr3 70538753 70538817 -89060966 + T-rich Low_complexity Low_complexity 3 66 0 6 1123 203 177 16 0 chr3 70538838 70538900 -89060883 + GA-rich Low_complexity Low_complexity 2 64 0 6 1123 1129 214 90 19 chr3 70538976 70539243 -89060540 + Lx4B LINE L1 6773 7058 0 6 1123 561 310 32 0 chr3 70539867 70540025 -89059758 - B3 SINE B2 -51 165 3 6 1123 3201 96 23 6 chr3 70540495 70540969 -89058814 - L1_Mus1 LINE L1 0 6567 6086 6 1123 4186 65 2 5 chr3 70540969 70541560 -89058223 + L1Md_F2 LINE L1 5530 6118 -464 6 1123 24 0 0 0 chr3 70541821 70541845 -89057938 + AT_rich Low_complexity Low_complexity 1 24 0 6 1123 3527 81 2 8 chr3 70541873 70542359 -89057424 - L1Md_F2 LINE L1 -2 6580 6098 7 1123 377 340 10 0 chr3 70543820 70543920 -89055863 - PB1D10 SINE Alu -9 108 8 7 1123 398 296 33 0 chr3 70544422 70544553 -89055230 + MTD LTR MaLR 180 323 -98 7 1123 353 323 126 27 chr3 70545443 70545666 -89054117 - B4A SINE B4 -40 252 8 7 1123 226 355 71 18 chr3 70546571 70546683 -89053100 - MLT1C LTR MaLR -142 325 208 7 1123 455 293 144 0 chr3 70547008 70547182 -89052601 + MTD LTR MaLR 216 414 -5 7 1123 23 0 0 0 chr3 70548011 70548034 -89051749 + AT_rich Low_complexity Low_complexity 1 23 0 7 1123 2632 47 6 169 chr3 70548196 70548662 -89051121 - RLTR10 LTR ERVK 0 390 1 7 1123 681 36 0 0 chr3 70548672 70548755 -89051028 + RLTR10 LTR ERVK 308 390 0 7 1123 8339 39 1 6 chr3 70548756 70549764 -89050019 + RLTR10-int LTR ERVK 9 988 -999 7 1123 8764 18 0 1 chr3 70549844 70550840 -89048943 + RLTR10-int LTR ERVK 992 1986 -1 7 1123 2665 47 6 197 chr3 70550840 70551322 -89048461 + RLTR10 LTR ERVK 1 390 0 7 1123 523 265 132 5 chr3 70551612 70551802 -89047981 + B3 SINE B2 3 216 0 7 1123 606 177 0 0 chr3 70552860 70552984 -89046799 + CT-rich Low_complexity Low_complexity 1 124 0 8 1123 231 316 0 12 chr3 70553005 70553085 -89046698 + CT-rich Low_complexity Low_complexity 2 80 0 8 1123 214 292 0 40 chr3 70553792 70553867 -89045916 + GA-rich Low_complexity Low_complexity 2 73 0 8 1123 21 82 0 0 chr3 70555279 70555328 -89044455 + AT_rich Low_complexity Low_complexity 1 49 0 8 1123 264 279 29 0 chr3 70555386 70555454 -89044329 - RMER15 LTR ERVL -505 70 1 8 1123 1482 196 119 56 chr3 70555601 70555995 -89043788 - MTC LTR MaLR 0 421 3 8 1123 402 326 57 15 chr3 70556443 70556705 -89043078 - L1MC3 LINE L1 -74 7711 7439 8 1123 189 0 0 0 chr3 70556901 70556922 -89042861 + (TA)n Simple_repeat Simple_repeat 1 21 0 8 1123 544 128 85 0 chr3 70557053 70557147 -89042636 + B2_Mm2 SINE B2 94 195 0 8 1123 515 232 65 26 chr3 70557224 70557379 -89042404 - MTD LTR MaLR 0 419 259 8 1123 593 182 50 6 chr3 70557386 70557546 -89042237 + Lx9 LINE L1 7471 7637 -7 8 1123 2311 260 25 16 chr3 70557992 70558543 -89041240 - Lx5 LINE L1 -5 7045 6490 9 1123 622 107 9 28 chr3 70558537 70558643 -89041140 + Lx5 LINE L1 5880 5983 -1067 9 1123 248 20 39 39 chr3 70559009 70559060 -89040723 + (TTTG)n Simple_repeat Simple_repeat 2 52 0 9 1123 1044 63 0 14 chr3 70559063 70559208 -89040575 - B1_Mus1 SINE Alu 0 148 6 9 1123 194 261 81 73 chr3 70559487 70559611 -89040172 - L3b LINE CR1 -264 218 94 9 1123 452 122 12 0 chr3 70559889 70559971 -89039812 + (TA)n Simple_repeat Simple_repeat 1 83 0 9 1123 869 213 93 93 chr3 70561526 70561806 -89037977 - RLTR31_Mm LTR ERVK 0 561 282 9 1123 334 370 108 14 chr3 70561844 70561971 -89037812 + RSINE1 SINE B4 4 146 -19 9 1123 546 79 0 0 chr3 70561971 70562047 -89037736 + (CA)n Simple_repeat Simple_repeat 1 76 0 9 1123 334 370 108 14 chr3 70562047 70562067 -89037716 + RSINE1 SINE B4 147 165 0 9 1123 236 160 85 0 chr3 70562090 70562219 -89037564 + (TA)n Simple_repeat Simple_repeat 1 139 0 9 1123 3272 251 73 9 chr3 70563943 70564823 -89034960 - Lx7 LINE L1 -459 7237 6302 1 1123 279 292 0 0 chr3 70564821 70564917 -89034866 - L1_Mur3 LINE L1 -427 5453 5358 1 1123 228 86 0 0 chr3 70564961 70564996 -89034787 + (TC)n Simple_repeat Simple_repeat 1 35 0 1 1123 492 165 0 0 chr3 70565004 70565095 -89034688 + (CATA)n Simple_repeat Simple_repeat 4 94 0 1 1123 225 0 0 0 chr3 70565294 70565319 -89034464 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 1 1123 344 283 10 0 chr3 70565320 70565419 -89034364 - Lx7 LINE L1 -384 7312 7213 1 1123 861 102 14 7 chr3 70565630 70565778 -89034005 + L1_Mus3 LINE L1 6490 6638 0 1 1123 884 322 21 49 chr3 70565894 70566283 -89033500 + Lx9 LINE L1 6997 7374 -270 1 1123 22 0 0 0 chr3 70566352 70566374 -89033409 + AT_rich Low_complexity Low_complexity 1 22 0 1 1123 967 282 75 27 chr3 70566447 70566632 -89033151 + RLTR12B LTR ERVK 42 245 -283 1 1123 270 73 0 0 chr3 70566632 70566673 -89033110 + (CAGA)n Simple_repeat Simple_repeat 2 42 0 1 1123 636 14 0 0 chr3 70566676 70566749 -89033034 + (GA)n Simple_repeat Simple_repeat 2 74 0 1 1123 967 282 75 27 chr3 70566749 70567000 -89032783 + RLTR12B LTR ERVK 246 503 -25 1 1123 239 190 17 0 chr3 70567074 70567132 -89032651 + Lx9 LINE L1 7571 7629 -15 1 1123 837 142 0 0 chr3 70567185 70567326 -89032457 + (GGA)n Simple_repeat Simple_repeat 2 142 0 1 1123 2672 114 30 21 chr3 70568148 70568585 -89031198 - Lx3_Mus LINE L1 0 7009 6569 1 1123 737 104 16 16 chr3 70568585 70568695 -89031088 + B2_Mm2 SINE B2 50 161 -34 1 1123 225 65 0 0 chr3 70568695 70568726 -89031057 + (TAAA)n Simple_repeat Simple_repeat 1 31 0 1 1123 737 104 16 16 chr3 70568726 70568742 -89031041 + B2_Mm2 SINE B2 162 175 -20 1 1123 1294 42 0 0 chr3 70568945 70569111 -89030672 - L1Md_F2 LINE L1 -12 6570 6405 1 1123 21 0 0 0 chr3 70569191 70569212 -89030571 + AT_rich Low_complexity Low_complexity 1 21 0 1 1123 26 30 0 0 chr3 70569229 70569262 -89030521 + AT_rich Low_complexity Low_complexity 1 33 0 1 1123 919 328 77 95 chr3 70570247 70571003 -89028780 + Lx8 LINE L1 6351 7092 -381 1 1123 1837 223 46 80 chr3 70571361 70571927 -89027856 + RMER1C Other Other 792 1338 -4 1 1123 22 35 0 0 chr3 70572327 70572356 -89027427 + AT_rich Low_complexity Low_complexity 1 29 0 1 1123 183 42 0 0 chr3 70573248 70573272 -89026511 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 1 1123 4495 75 0 0 chr3 70573422 70573996 -89025787 + L1_Mus1 LINE L1 5992 6565 -2 1 1123 6559 150 29 10 chr3 70574057 70575918 -89023865 + Lx LINE L1 4738 6628 -26 1 1123 294 87 27 55 chr3 70576066 70576139 -89023644 + (TCTCTG)n Simple_repeat Simple_repeat 2 72 0 1 1123 521 55 14 0 chr3 70576194 70576267 -89023516 + (CA)n Simple_repeat Simple_repeat 2 75 0 1 1123 5621 245 60 30 chr3 70576542 70576855 -89022928 - Lx7 LINE L1 -22 7674 7334 1 1123 223 49 0 47 chr3 70576855 70576898 -89022885 + (CAAA)n Simple_repeat Simple_repeat 4 44 0 1 1123 5621 248 56 26 chr3 70576898 70578293 -89021490 - Lx7 LINE L1 -363 7333 5835 1 1123 514 259 15 0 chr3 70578293 70578424 -89021359 + RMER19B LTR ERVK 768 900 -2 1 1123 1174 109 26 5 chr3 70578424 70578617 -89021166 + L1_Mus3 LINE L1 6414 6610 -28 1 1123 4147 17 0 0 chr3 70578613 70579092 -89020691 + L1Md_T LINE L1 5108 5586 -297 1 1123 8944 5 1 0 chr3 70579092 70580087 -89019696 + L1Md_T LINE L1 5587 6582 0 1 1123 222 37 0 0 chr3 70580102 70580129 -89019654 + (A)n Simple_repeat Simple_repeat 1 27 0 1 1123 7451 82 2 3 chr3 70580171 70581852 -89017931 - L1Md_F2 LINE L1 -1 6581 4902 1 1123 240 329 104 59 chr3 70582136 70582356 -89017427 + L2a LINE L2 2695 2924 -495 1 1123 378 344 50 43 chr3 70582498 70582756 -89017027 + L2a LINE L2 3164 3423 -3 1 1123 243 374 57 19 chr3 70582999 70583157 -89016626 + L2 LINE L2 2676 2839 -580 1 1123 780 179 34 14 chr3 70583904 70584051 -89015732 + B1_Mur4 SINE Alu 1 150 0 1 1123 530 253 59 34 chr3 70584087 70584271 -89015512 - B3 SINE B2 0 216 4 1 1123 229 261 43 21 chr3 70584513 70584607 -89015176 + MIRc SINE MIR 165 260 -8 1 1123 3471 25 0 0 chr3 70585147 70585543 -89014240 - MTA_Mm LTR MaLR 0 396 1 1 1123 14485 176 32 159 chr3 70585585 70587250 -89012533 - L1_Mur2 LINE L1 -645 5232 3543 1 1123 2427 207 77 65 chr3 70587250 70587884 -89011899 - RLTR26 LTR ERVK 0 642 1 1 1123 14485 176 32 159 chr3 70587884 70590095 -89009688 - L1_Mur2 LINE L1 -645 3542 1297 1 1123 1677 247 44 22 chr3 70590118 70590528 -89009255 - RMER13A LTR ERVK 0 860 442 1 1123 980 162 49 0 chr3 70590528 70590732 -89009051 - L1_Mur2 LINE L1 -5801 1285 1072 1 1123 1719 275 21 41 chr3 70590732 70591267 -89008516 - RMER19C LTR ERVK 0 611 88 1 1123 723 257 22 45 chr3 70591298 70591597 -89008186 - L1_Mur2 LINE L1 -5910 1074 798 1 1123 2272 249 165 15 chr3 70591788 70592523 -89007260 + RMER1C Other Other 495 1339 -3 1 1123 24 53 0 0 chr3 70593778 70593816 -89005967 + AT_rich Low_complexity Low_complexity 1 38 0 1 1123 435 311 110 0 chr3 70593827 70594055 -89005728 + Lx8 LINE L1 6874 7126 -347 1 1123 477 72 0 14 chr3 70594053 70594123 -89005660 - MusHAL1 LINE L1 -2332 380 312 1 1123 6887 33 0 1 chr3 70594145 70594961 -89004822 - L1Md_F3 LINE L1 0 6584 5770 1 1123 4660 165 23 1 chr3 70594963 70595819 -89003964 + L1_Mur2 LINE L1 3536 4410 -1467 1 1123 2415 155 29 12 chr3 70595817 70596234 -89003549 + Lx LINE L1 6166 6589 -65 1 1123 432 0 0 0 chr3 70596250 70596298 -89003485 + (TA)n Simple_repeat Simple_repeat 2 49 0 1 1123 467 280 121 35 chr3 70596311 70596485 -89003298 + Lx8 LINE L1 7156 7344 -129 1 1123 438 108 0 0 chr3 70596826 70596891 -89002892 + (TA)n Simple_repeat Simple_repeat 1 65 0 1 1123 28 0 0 0 chr3 70597192 70597220 -89002563 + AT_rich Low_complexity Low_complexity 1 28 0 1 1123 267 29 0 0 chr3 70597283 70597303 -89002480 + (TA)n Simple_repeat Simple_repeat 1 20 0 1 1123 420 20 0 0 chr3 70597303 70597352 -89002431 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 1123 267 29 0 0 chr3 70597352 70597365 -89002418 + (TA)n Simple_repeat Simple_repeat 2 14 0 1 1123 1672 170 6 64 chr3 70597471 70597817 -89001966 + ORR1A3 LTR MaLR 1 326 0 1 1123 954 94 7 7 chr3 70599105 70599244 -89000539 + B1_Mus2 SINE Alu 9 147 0 1 1123 3750 51 8 4 chr3 70599592 70600066 -88999717 + L1Md_F2 LINE L1 6094 6569 -13 1 1123 23 0 0 0 chr3 70600485 70600508 -88999275 + AT_rich Low_complexity Low_complexity 1 23 0 1 1123 268 327 0 96 chr3 70600585 70600700 -88999083 + MT2B LTR ERVL 155 258 -343 1 1123 537 204 46 0 chr3 70600619 70600727 -88999056 + B1_Mur2 SINE Alu 25 137 -12 1 1123 627 57 0 0 chr3 70600742 70600830 -88998953 + (TTTC)n Simple_repeat Simple_repeat 4 91 0 1 1123 1086 140 0 0 chr3 70601068 70601247 -88998536 + (TCC)n Simple_repeat Simple_repeat 2 180 0 1 1123 704 87 9 28 chr3 70601262 70601368 -88998415 - B1_Mus2 SINE Alu -1 146 43 1 1123 248 373 6 24 chr3 70601509 70601674 -88998109 + RSINE1 SINE B4 4 165 0 1 1123 631 297 0 22 chr3 70601877 70602056 -88997727 + Lx7 LINE L1 7126 7300 -396 1 1123 28 0 0 0 chr3 70602233 70602261 -88997522 + AT_rich Low_complexity Low_complexity 1 28 0 1 1123 1416 118 58 17 chr3 70602332 70602573 -88997210 + Lx4A LINE L1 6522 6772 -286 1 1123 438 20 0 0 chr3 70602601 70602652 -88997131 + (TC)n Simple_repeat Simple_repeat 2 52 0 1 1123 29 0 0 0 chr3 70602717 70602746 -88997037 + AT_rich Low_complexity Low_complexity 1 29 0 1 1123 3072 42 5 3 chr3 70603347 70603728 -88996055 - L1Md_F3 LINE L1 0 6584 6203 1 1123 1411 7 0 0 chr3 70603729 70603884 -88995899 + L1Md_F3 LINE L1 6039 6193 -391 1 1123 502 336 84 4 chr3 70603887 70604138 -88995645 - MLT1C LTR MaLR -196 271 1 1 1123 26 0 0 0 chr3 70605715 70605741 -88994042 + AT_rich Low_complexity Low_complexity 1 26 0 1 1123 332 271 23 8 chr3 70606799 70606929 -88992854 + GA-rich Low_complexity Low_complexity 2 133 0 1 1123 464 130 11 0 chr3 70606929 70607021 -88992762 + (CA)n Simple_repeat Simple_repeat 2 94 0 1 1123 549 0 0 0 chr3 70607022 70607083 -88992700 + (GA)n Simple_repeat Simple_repeat 2 62 0 1 1123 275 349 101 35 chr3 70607677 70607935 -88991848 - MER58B DNA MER1_type -10 331 57 1 1123 628 300 24 0 chr3 70608782 70608952 -88990831 - B3A SINE B2 -24 174 1 1 1123 541 271 32 43 chr3 70610327 70610512 -88989271 + B3A SINE B2 1 183 -15 1 1123 376 155 59 12 chr3 70610573 70610658 -88989125 + L1Md_F2 LINE L1 6492 6580 -2 1 1123 213 65 0 0 chr3 70610679 70610710 -88989073 + (A)n Simple_repeat Simple_repeat 1 31 0 1 1123 380 302 131 41 chr3 70611690 70611987 -88987796 - MTE-int LTR MaLR -22 1558 1078 1 1123 314 335 90 90 chr3 70612187 70612364 -88987419 - MTEa LTR MaLR -194 185 9 1 1123 607 392 63 58 chr3 70612610 70613005 -88986778 - MTE-int LTR MaLR -448 1132 736 1 1123 9892 12 0 0 chr3 70613037 70614247 -88985536 - L1Md_T LINE L1 -624 5958 4749 1 1123 5847 8 0 0 chr3 70614247 70614898 -88984885 + L1Md_T LINE L1 5932 6582 0 1 1123 24 0 0 0 chr3 70614923 70614947 -88984836 + AT_rich Low_complexity Low_complexity 1 24 0 1 1123 809 74 40 7 chr3 70615347 70615497 -88984286 - RMER17B LTR ERVK -498 460 306 1 1123 409 364 76 4 chr3 70615497 70615759 -88984024 - Lx8 LINE L1 -225 7248 6968 1 1123 313 274 53 0 chr3 70617382 70617495 -88982288 + L1_Rod LINE L1 5713 5831 -16 1 1123 229 237 17 0 chr3 70617544 70617603 -88982180 + (TATATG)n Simple_repeat Simple_repeat 6 65 0 1 1123 1052 275 90 52 chr3 70617710 70618222 -88981561 + MT2B LTR ERVL 3 601 0 1 1123 180 0 0 0 chr3 70618355 70618375 -88981408 + (A)n Simple_repeat Simple_repeat 1 20 0 1 1123 25 0 0 0 chr3 70618509 70618534 -88981249 + AT_rich Low_complexity Low_complexity 1 25 0 1 1123 28722 103 5 14 chr3 70618577 70620871 -88978912 - L1_Mus1 LINE L1 0 6567 4330 1 1123 1064 176 10 0 chr3 70620871 70621070 -88978713 - L1_Mus2 LINE L1 -1 6565 6365 1 1123 28722 123 8 24 chr3 70621070 70622764 -88977019 - L1_Mus1 LINE L1 -1554 4329 2638 1 1123 1020 17 0 0 chr3 70622764 70622882 -88976901 + (TTC)n Simple_repeat Simple_repeat 2 119 0 1 1123 28722 161 43 70 chr3 70622882 70625333 -88974450 - L1_Mus1 LINE L1 -3246 2637 244 1 1123 180 77 0 0 chr3 70626510 70626536 -88973247 + (TTTTTG)n Simple_repeat Simple_repeat 2 27 0 1 1123 39 38 0 0 chr3 70627317 70627370 -88972413 + AT_rich Low_complexity Low_complexity 1 53 0 1 1123 26 50 0 0 chr3 70628248 70628288 -88971495 + AT_rich Low_complexity Low_complexity 1 40 0 2 1123 22 35 0 0 chr3 70628322 70628351 -88971432 + AT_rich Low_complexity Low_complexity 1 29 0 2 1123 197 33 0 32 chr3 70628364 70628395 -88971388 + (CAAAAA)n Simple_repeat Simple_repeat 2 31 0 2 1123 22 0 0 0 chr3 70628523 70628545 -88971238 + AT_rich Low_complexity Low_complexity 1 22 0 2 1123 977 144 57 21 chr3 70629199 70629391 -88970392 + Lx LINE L1 6456 6654 0 2 1123 580 289 149 19 chr3 70629428 70629696 -88970087 - Lx6 LINE L1 -19 7441 7139 2 1123 7014 43 2 1 chr3 70629950 70630810 -88968973 - L1Md_F2 LINE L1 0 6582 5722 2 1123 202 349 71 19 chr3 70630855 70631010 -88968773 - L2a LINE L2 0 3426 3264 2 1123 38008 12 1 7 chr3 70631148 70636565 -88963218 + L1Md_A LINE L1 205 5586 -297 2 1123 8890 8 1 0 chr3 70636565 70637560 -88962223 + L1Md_A LINE L1 5587 6582 0 2 1123 265 330 65 29 chr3 70637910 70638188 -88961595 + MER33 DNA MER1_type 7 294 -30 2 1123 4290 10 21 0 chr3 70640442 70640925 -88958858 - MT2_Mm LTR ERVL 0 493 1 2 1123 314 0 0 0 chr3 70640925 70640963 -88958820 - MERVL-int LTR ERVL 0 5485 5448 2 1123 400 137 13 40 chr3 70640963 70641039 -88958744 - ORR1A3-int LTR MaLR -1323 640 567 2 1123 12288 44 25 0 chr3 70641039 70643194 -88956589 - MERVL-int LTR ERVL -114 5371 2937 2 1123 24865 12 4 0 chr3 70643191 70645975 -88953808 - MERVL-int LTR ERVL -2690 2795 1 2 1123 3733 11 121 0 chr3 70645975 70646415 -88953368 - MT2_Mm LTR ERVL 0 493 1 2 1123 22 35 0 0 chr3 70646908 70646937 -88952846 + AT_rich Low_complexity Low_complexity 1 29 0 2 1123 422 272 17 34 chr3 70647368 70647486 -88952297 + ID_B1 SINE B4 109 224 0 2 1123 276 129 35 23 chr3 70647492 70647579 -88952204 + A-rich Low_complexity Low_complexity 3 90 0 2 1124 1011 40 0 0 chr3 70648291 70648415 -88951368 + (TTC)n Simple_repeat Simple_repeat 2 125 0 2 1124 1136 96 0 6 chr3 70648418 70648585 -88951198 - L1Md_F2 LINE L1 -19 6563 6398 2 1124 1349 139 87 0 chr3 70648622 70648852 -88950931 + L1_Mus3 LINE L1 6268 6517 -121 2 1124 6306 55 16 4 chr3 70648860 70649674 -88950109 + L1Md_F2 LINE L1 5759 6582 0 2 1124 25 31 0 0 chr3 70649931 70649963 -88949820 + AT_rich Low_complexity Low_complexity 1 32 0 2 1124 1103 89 7 0 chr3 70650125 70650271 -88949512 - B1_Mm SINE Alu 0 147 1 2 1124 3440 64 5 0 chr3 70650430 70650866 -88948917 + L1_Mus1 LINE L1 6129 6566 -1 2 1124 21 0 0 0 chr3 70651059 70651080 -88948703 + AT_rich Low_complexity Low_complexity 1 21 0 2 1124 394 289 158 22 chr3 70651866 70652050 -88947733 + B3 SINE B2 2 210 -6 2 1124 38485 40 4 6 chr3 70652481 70658851 -88940932 - L1Md_T LINE L1 0 6582 231 2 1124 261 0 0 0 chr3 70659321 70659350 -88940433 + (T)n Simple_repeat Simple_repeat 1 29 0 2 1124 756 245 93 47 chr3 70659371 70659649 -88940134 - RMER15 LTR ERVL -39 536 246 2 1124 24 0 0 0 chr3 70659658 70659682 -88940101 + AT_rich Low_complexity Low_complexity 1 24 0 2 1124 6616 193 42 27 chr3 70661437 70663026 -88936757 + Lx5 LINE L1 5417 7043 -7 2 1124 1624 337 102 36 chr3 70663037 70663753 -88936030 + Lx8 LINE L1 6193 6959 -514 2 1124 2773 86 32 2 chr3 70663753 70664162 -88935621 + BGLII LTR ERVK 1 421 0 2 1124 1624 337 102 36 chr3 70664162 70664437 -88935346 + Lx8 LINE L1 6960 7249 -224 2 1124 2351 97 43 0 chr3 70666223 70666572 -88933211 - L1_Mus4 LINE L1 -2 6634 6271 2 1124 1185 68 0 0 chr3 70667746 70667893 -88931890 - B1_Mus2 SINE Alu 0 147 1 2 1124 1794 256 30 30 chr3 70668237 70668776 -88931007 - Lx7 LINE L1 -1350 6346 5808 2 1124 804 206 3 116 chr3 70668777 70668933 -88930850 - Lx7 LINE L1 -458 5422 5295 2 1124 1175 61 0 0 chr3 70668933 70669080 -88930703 - B1_Mm SINE Alu 0 147 1 2 1124 804 206 3 116 chr3 70669080 70669208 -88930575 - Lx7 LINE L1 -586 5294 5170 2 1124 396 0 0 0 chr3 70669214 70669258 -88930525 + (TA)n Simple_repeat Simple_repeat 1 44 0 2 1124 7240 93 34 1 chr3 70669262 70670744 -88929039 - L1Md_F3 LINE L1 -105 6479 4886 2 1124 1404 287 39 26 chr3 70670738 70671199 -88928584 + Lx7 LINE L1 6804 7270 -426 2 1124 889 245 34 0 chr3 70671205 70671413 -88928370 + URR1B DNA MER1_type 1 215 -10 2 1124 340 256 79 18 chr3 70671442 70671746 -88928037 + Lx7 LINE L1 7304 7676 -20 2 1124 1156 68 0 0 chr3 70671794 70671940 -88927843 + B1_Mus2 SINE Alu 2 147 0 2 1124 515 299 30 96 chr3 70671987 70672290 -88927493 + Lx8 LINE L1 7187 7469 -4 2 1124 454 230 0 0 chr3 70673534 70673647 -88926136 + Lx9 LINE L1 7523 7635 -9 2 1124 261 0 0 0 chr3 70673652 70673681 -88926102 + (TAAA)n Simple_repeat Simple_repeat 1 29 0 2 1124 701 283 58 41 chr3 70673884 70674179 -88925604 - RMER15 LTR ERVL -2 573 274 2 1124 21 36 0 0 chr3 70674497 70674525 -88925258 + AT_rich Low_complexity Low_complexity 1 28 0 2 1124 234 91 0 0 chr3 70674575 70674608 -88925175 + (TTTTG)n Simple_repeat Simple_repeat 1 33 0 2 1124 4557 131 38 1 chr3 70674663 70675399 -88924384 - Lx LINE L1 0 6654 5892 2 1124 3206 67 2 0 chr3 70675429 70675845 -88923938 - L1Md_F2 LINE L1 -543 6039 5623 2 1124 3974 67 6 6 chr3 70675845 70676369 -88923414 + L1Md_F2 LINE L1 6058 6581 -1 2 1124 432 317 46 25 chr3 70676392 70676591 -88923192 + B4 SINE B4 4 206 -86 2 1124 264 30 0 0 chr3 70677087 70677120 -88922663 + (TTTG)n Simple_repeat Simple_repeat 3 35 0 2 1124 297 0 0 0 chr3 70678626 70678659 -88921124 + (TG)n Simple_repeat Simple_repeat 1 33 0 2 1124 841 265 133 21 chr3 70679791 70680076 -88919707 - MTD LTR MaLR 0 419 103 2 1124 3452 183 68 16 chr3 70680077 70680310 -88919473 - Lx4A LINE L1 -223 6835 6606 2 1124 2283 44 3 20 chr3 70680310 70680609 -88919174 + L1Md_F2 LINE L1 6287 6580 -2 2 1124 3452 183 68 16 chr3 70680609 70681042 -88918741 - Lx4A LINE L1 -453 6605 6135 2 1124 642 170 9 0 chr3 70681047 70681153 -88918630 + Lx4A LINE L1 6845 6951 -107 2 1124 236 312 82 20 chr3 70681217 70681315 -88918468 - MTD LTR MaLR -300 107 4 2 1124 308 228 18 0 chr3 70681373 70681430 -88918353 - B1F SINE Alu -14 135 78 2 1124 248 168 70 8 chr3 70681464 70681539 -88918244 - B3A SINE B2 -115 80 1 2 1124 234 109 15 45 chr3 70683150 70683217 -88916566 + T-rich Low_complexity Low_complexity 2 66 0 2 1124 254 370 20 0 chr3 70683490 70683590 -88916193 - PB1D9 SINE Alu -18 102 1 2 1124 243 131 32 16 chr3 70684464 70684483 -88915300 + polypyrimidine Low_complexity Low_complexity 45 64 0 2 1124 1034 144 0 6 chr3 70684483 70684664 -88915119 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 2 1124 243 131 32 16 chr3 70684664 70684706 -88915077 + CT-rich Low_complexity Low_complexity 3 44 0 2 1124 229 270 11 33 chr3 70684711 70684803 -88914980 - Lx9 LINE L1 -35 7609 7520 2 1124 369 0 0 0 chr3 70684805 70684846 -88914937 + (TG)n Simple_repeat Simple_repeat 2 42 0 2 1124 297 236 56 0 chr3 70684849 70684921 -88914862 - Lx9 LINE L1 -170 7474 7399 2 1124 408 299 96 0 chr3 70684922 70685079 -88914704 + Lx9 LINE L1 7212 7383 -261 2 1124 632 351 31 22 chr3 70685086 70685313 -88914470 - B4 SINE B4 -62 230 2 2 1124 228 246 105 16 chr3 70685551 70685675 -88914108 + L1MB7 LINE L1 6030 6164 -20 2 1124 25 0 0 0 chr3 70686191 70686216 -88913567 + AT_rich Low_complexity Low_complexity 1 25 0 2 1124 450 65 0 0 chr3 70686346 70686408 -88913375 + (TA)n Simple_repeat Simple_repeat 2 63 0 2 1124 448 304 8 0 chr3 70686635 70686760 -88913023 - Lx9 LINE L1 -197 7447 7322 2 1124 647 244 55 16 chr3 70686755 70686938 -88912845 + Lx9 LINE L1 7139 7328 -316 2 1124 430 329 54 7 chr3 70687560 70687707 -88912076 - B3A SINE B2 -43 155 2 2 1124 5331 75 1 12 chr3 70690717 70691442 -88908341 - L1Md_F2 LINE L1 0 6582 5866 2 1124 6242 52 1 0 chr3 70691443 70692217 -88907566 + L1Md_F2 LINE L1 5099 5873 -10 2 1124 400 192 9 9 chr3 70692666 70692771 -88907012 + (TA)n Simple_repeat Simple_repeat 2 106 0 2 1124 273 347 32 0 chr3 70693999 70694123 -88905660 - MTEb LTR MaLR -1 378 251 2 1124 486 83 0 0 chr3 70694829 70694901 -88904882 + (TG)n Simple_repeat Simple_repeat 2 73 0 2 1124 408 288 16 21 chr3 70695205 70695326 -88904457 - MTD LTR MaLR -15 406 291 2 1124 496 328 55 17 chr3 70695376 70695612 -88904171 - MTD LTR MaLR -122 297 53 2 1124 930 55 20 53 chr3 70696623 70696775 -88903008 - L1Md_F3 LINE L1 -1 6583 6437 2 1124 34 24 0 0 chr3 70696941 70696982 -88902801 + AT_rich Low_complexity Low_complexity 1 41 0 2 1124 495 0 0 0 chr3 70697578 70697633 -88902150 + (TTTC)n Simple_repeat Simple_repeat 4 58 0 2 1124 294 129 0 0 chr3 70697646 70697708 -88902075 + (T)n Simple_repeat Simple_repeat 1 62 0 2 1124 1059 82 7 7 chr3 70697708 70697855 -88901928 - B1_Mus2 SINE Alu 0 147 1 2 1124 2932 218 114 45 chr3 70698219 70698944 -88900839 + Lx7 LINE L1 6766 7505 -191 2 1124 622 23 23 11 chr3 70698944 70699032 -88900751 + (TTTC)n Simple_repeat Simple_repeat 4 92 0 2 1124 2932 218 114 45 chr3 70699032 70699177 -88900606 + Lx7 LINE L1 7506 7696 0 2 1124 470 311 22 15 chr3 70699430 70699567 -88900216 + B1F1 SINE Alu 11 148 -1 2 1124 254 355 59 34 chr3 70699707 70699946 -88899837 + MLT1A0 LTR MaLR 1 245 -120 2 1124 838 173 14 0 chr3 70700761 70700900 -88898883 + B1_Mur4 SINE Alu 1 141 -9 2 1124 833 325 108 11 chr3 70701613 70701958 -88897825 - MER70B LTR ERVL -148 430 56 2 1124 263 85 21 0 chr3 70701958 70702005 -88897778 + (TG)n Simple_repeat Simple_repeat 1 48 0 2 1124 833 325 108 11 chr3 70702005 70702039 -88897744 - MER70B LTR ERVL -523 55 15 2 1124 631 313 127 12 chr3 70702487 70702739 -88897044 + B4A SINE B4 2 282 -10 2 1124 225 139 0 0 chr3 70702750 70702793 -88896990 + (CA)n Simple_repeat Simple_repeat 2 44 0 2 1124 319 348 74 35 chr3 70703016 70703245 -88896538 - MER70-int LTR ERVL -657 4366 4129 2 1124 2246 122 165 5 chr3 70703641 70704028 -88895755 + RLTR44B LTR ERVK 1 449 0 2 1124 645 14 0 0 chr3 70704702 70704776 -88895007 + (TC)n Simple_repeat Simple_repeat 2 75 0 2 1124 478 328 32 16 chr3 70704878 70705067 -88894716 - MER70-int LTR ERVL -1689 3334 3143 2 1124 255 281 58 10 chr3 70705187 70705291 -88894492 - MER70-int LTR ERVL -2064 2959 2851 2 1124 25 51 0 0 chr3 70705301 70705340 -88894443 + AT_rich Low_complexity Low_complexity 1 39 0 2 1124 8008 48 6 0 chr3 70705364 70706342 -88893441 - L1Md_F2 LINE L1 -12 6570 5587 2 1124 4029 61 0 15 chr3 70706344 70706875 -88892908 + L1Md_F2 LINE L1 5064 5586 -297 2 1124 591 194 23 23 chr3 70707135 70707267 -88892516 + Lx7 LINE L1 7230 7361 -335 2 1124 260 70 0 23 chr3 70707486 70707530 -88892253 + (TTA)n Simple_repeat Simple_repeat 3 45 0 2 1124 342 336 0 14 chr3 70707570 70707709 -88892074 + MYSERV-int LTR ERVK 4031 4167 -4792 2 1124 459 0 0 0 chr3 70707712 70707763 -88892020 + (TA)n Simple_repeat Simple_repeat 1 51 0 2 1124 1266 131 4 129 chr3 70707817 70708072 -88891711 + ORR1A2 LTR MaLR 7 229 -98 2 1124 984 87 34 0 chr3 70708063 70708212 -88891571 + MT2B2 LTR ERVL 431 584 0 2 1124 892 318 59 111 chr3 70708259 70708348 -88891435 + MYSERV-int LTR ERVK 4064 4151 -2399 2 1124 3398 100 53 19 chr3 70708348 70708878 -88890905 + Lx LINE L1 6101 6648 -6 2 1124 892 318 59 111 chr3 70708878 70709906 -88889877 + MYSERV-int LTR ERVK 4152 5123 -1427 2 1124 313 221 100 105 chr3 70709937 70710115 -88889668 + RMER4A LTR ERVK 276 557 -28 3 1124 1518 245 75 36 chr3 70710178 70710588 -88889195 + MYSERV6-int LTR ERVK 7813 8226 -733 3 1124 660 57 28 0 chr3 70710588 70710694 -88889089 + (TA)n Simple_repeat Simple_repeat 1 109 0 3 1124 351 0 0 0 chr3 70710698 70710737 -88889046 + (CA)n Simple_repeat Simple_repeat 2 40 0 3 1124 1518 245 75 36 chr3 70710737 70710931 -88888852 + MYSERV6-int LTR ERVK 8227 8442 -517 3 1124 1216 222 34 20 chr3 70711020 70711368 -88888415 + MYSERV-int LTR ERVK 6036 6352 -198 3 1124 523 251 5 76 chr3 70711548 70711746 -88888037 + MYSERV-int LTR ERVK 6358 6541 -9 3 1124 646 308 61 30 chr3 70711760 70712158 -88887625 + RLTR11A2 LTR ERVK 5 414 -27 3 1124 252 224 45 0 chr3 70712185 70712252 -88887531 + Lx7 LINE L1 7627 7696 0 2 1124 281 240 40 0 chr3 70712258 70712333 -88887450 - MER70-int LTR ERVL -2384 2639 2562 3 1124 306 304 0 0 chr3 70712501 70712580 -88887203 - MER70-int LTR ERVL -3097 1926 1848 3 1124 370 295 78 67 chr3 70713199 70713691 -88886092 - L1M3e LINE L1 -3678 3425 2919 3 1124 685 335 37 80 chr3 70713730 70714106 -88885677 - MTEa LTR MaLR 0 379 20 3 1124 1253 218 189 3 chr3 70714111 70714428 -88885355 + ORR1C1 LTR MaLR 1 376 -2 3 1124 1174 347 73 56 chr3 70714497 70714692 -88885091 - MTEa-int LTR MaLR -39 1541 1342 3 1124 387 0 0 0 chr3 70714692 70714735 -88885048 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 1124 1174 347 73 56 chr3 70714735 70715195 -88884588 - MTEa-int LTR MaLR -239 1341 875 3 1124 411 369 109 6 chr3 70715201 70715512 -88884271 - MTEa-int LTR MaLR -858 722 380 3 1124 7963 55 7 2 chr3 70715622 70717186 -88882597 - L1Md_F2 LINE L1 0 6582 5014 3 1124 561 311 111 10 chr3 70717902 70718110 -88881673 - MTEa-int LTR MaLR -1334 246 18 3 1124 227 246 0 34 chr3 70718122 70718181 -88881602 - MTEa LTR MaLR -7 372 316 3 1124 1620 87 0 9 chr3 70718182 70718402 -88881381 - L1_Mus2 LINE L1 -204 6362 6145 3 1124 1236 122 71 85 chr3 70718394 70718618 -88881165 + L1_Mus2 LINE L1 6345 6565 -1 3 1124 618 298 158 50 chr3 70718812 70719109 -88880674 + MTD LTR MaLR 74 402 -17 3 1124 347 328 67 62 chr3 70719149 70719344 -88880439 - MTEa LTR MaLR -183 196 1 3 1124 782 199 22 17 chr3 70719429 70719608 -88880175 - L1_Mur2 LINE L1 -263 5614 5435 3 1124 1202 195 8 0 chr3 70719599 70719840 -88879943 + L1_Mur2 LINE L1 4816 5058 -819 3 1124 3382 93 30 12 chr3 70719842 70720344 -88879439 - L1_Mus3 LINE L1 0 6638 6128 3 1124 691 217 62 1 chr3 70720380 70720562 -88879221 + L1_Mur2 LINE L1 5268 5440 -437 3 1124 474 266 70 44 chr3 70720719 70721073 -88878710 - L1M3e LINE L1 -4994 2113 1766 3 1124 21 36 0 0 chr3 70721557 70721585 -88878198 + AT_rich Low_complexity Low_complexity 1 28 0 3 1124 1298 149 69 52 chr3 70721742 70722049 -88877734 - Lx3B LINE L1 0 6973 6617 3 1124 411 38 0 0 chr3 70722162 70722215 -88877568 + (TCTA)n Simple_repeat Simple_repeat 4 56 0 3 1124 213 65 0 0 chr3 70722216 70722247 -88877536 + (TC)n Simple_repeat Simple_repeat 1 31 0 3 1124 274 167 58 35 chr3 70722247 70722334 -88877449 + Lx9 LINE L1 7479 7567 -77 3 1124 214 186 0 0 chr3 70722373 70722416 -88877367 + A-rich Low_complexity Low_complexity 1 43 0 3 1124 610 254 94 31 chr3 70722759 70722950 -88876833 - B3 SINE B2 0 216 14 3 1124 493 185 6 22 chr3 70723209 70723391 -88876392 + (TA)n Simple_repeat Simple_repeat 2 180 0 3 1124 1020 111 0 0 chr3 70723510 70723690 -88876093 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 3 1124 1460 77 0 0 chr3 70723690 70723910 -88875873 - L1_Mus1 LINE L1 0 6567 6367 3 1124 298 294 36 20 chr3 70723995 70724148 -88875635 - L1M4 LINE L1 -319 5849 5689 3 1124 364 345 50 60 chr3 70724751 70724850 -88874933 - L1M4 LINE L1 -991 5155 5058 3 1124 4910 146 14 2 chr3 70724850 70725662 -88874121 + Lx LINE L1 5832 6652 -2 3 1124 364 345 50 60 chr3 70725662 70725960 -88873823 - L1M4 LINE L1 -1089 5057 4763 3 1124 905 290 15 0 chr3 70727158 70727417 -88872366 - Lx5 LINE L1 -3 7047 6785 3 1124 2825 81 36 0 chr3 70727723 70728107 -88871676 + MTB LTR MaLR 3 400 0 3 1124 1945 188 42 15 chr3 70729026 70729432 -88870351 + Lx2B LINE L1 6584 7000 0 3 1124 710 83 0 10 chr3 70729478 70729575 -88870208 - L1_Mus2 LINE L1 -194 6372 6277 3 1124 1475 95 0 9 chr3 70729577 70729790 -88869993 + L1_Mus2 LINE L1 6356 6566 0 3 1124 438 337 60 75 chr3 70730036 70730434 -88869349 + RMER5 LTR ERV1 112 503 -31 3 1124 359 233 50 0 chr3 70730972 70731092 -88868691 - Lx9 LINE L1 -1 7643 7518 3 1124 180 125 0 0 chr3 70731099 70731131 -88868652 + (TG)n Simple_repeat Simple_repeat 1 32 0 3 1124 28 71 0 0 chr3 70731222 70731278 -88868505 + AT_rich Low_complexity Low_complexity 1 56 0 3 1124 1663 239 179 8 chr3 70731278 70731473 -88868310 - Lx9 LINE L1 -142 7502 7271 3 1124 486 0 0 0 chr3 70731473 70731527 -88868256 + (TA)n Simple_repeat Simple_repeat 2 55 0 3 1124 1663 239 179 8 chr3 70731527 70731918 -88867865 - Lx9 LINE L1 -374 7270 6818 3 1124 847 336 39 24 chr3 70732135 70732470 -88867313 + MTD LTR MaLR 76 415 -4 3 1124 1508 47 0 55 chr3 70732546 70732747 -88867036 - B2_Mm1t SINE B2 -2 191 2 3 1124 24 53 0 0 chr3 70733723 70733761 -88866022 + AT_rich Low_complexity Low_complexity 1 38 0 3 1124 283 389 11 108 chr3 70733885 70734023 -88865760 - RSINE1 SINE B4 0 165 41 3 1124 2241 98 6 58 chr3 70734023 70734368 -88865415 - ORR1A2 LTR MaLR 0 327 1 3 1124 283 389 11 108 chr3 70734368 70734405 -88865378 - RSINE1 SINE B4 -125 40 7 3 1124 2425 295 54 35 chr3 70734445 70735320 -88864463 + Lx7 LINE L1 6476 7366 -330 3 1124 524 95 0 12 chr3 70735320 70735405 -88864378 + (TCCC)n Simple_repeat Simple_repeat 3 86 0 3 1124 186 43 0 0 chr3 70735407 70735430 -88864353 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 3 1124 1359 230 110 33 chr3 70735626 70736017 -88863766 + MTC LTR MaLR 1 421 0 3 1124 391 282 144 23 chr3 70736578 70736752 -88863031 - ORR1C1 LTR MaLR 0 370 176 3 1124 560 145 8 0 chr3 70736763 70736880 -88862903 + GA-rich Low_complexity Low_complexity 1 118 0 3 1124 256 316 104 10 chr3 70736918 70737014 -88862769 - ORR1C1 LTR MaLR -258 112 8 3 1124 898 212 48 5 chr3 70737020 70737228 -88862555 - ORR1C1-int LTR MaLR 0 1370 1154 3 1124 33968 69 9 1 chr3 70737231 70742410 -88857373 + L1Md_F3 LINE L1 404 5585 -298 3 1124 7942 44 5 1 chr3 70742412 70743388 -88856395 + L1Md_F3 LINE L1 5588 6567 -17 3 1124 2773 286 32 85 chr3 70743401 70744377 -88855406 - ORR1C1-int LTR MaLR -210 1160 237 3 1124 1034 261 107 9 chr3 70744360 70744677 -88855106 - ORR1C1 LTR MaLR -30 348 1 3 1124 438 314 36 36 chr3 70744685 70744848 -88854935 - ORR1C1-int LTR MaLR -1162 208 46 3 1124 210 128 0 0 chr3 70744848 70744887 -88854896 + (CA)n Simple_repeat Simple_repeat 2 40 0 3 1124 438 314 36 36 chr3 70744887 70744918 -88854865 - ORR1C1-int LTR MaLR -1325 45 15 3 1124 954 309 65 31 chr3 70744933 70745287 -88854496 - ORR1C1 LTR MaLR -2 368 3 3 1124 25 0 0 0 chr3 70745586 70745611 -88854172 + AT_rich Low_complexity Low_complexity 1 25 0 3 1124 1265 66 0 0 chr3 70746216 70746382 -88853401 - L1_Mus1 LINE L1 -2 6565 6400 3 1124 1188 85 6 6 chr3 70746382 70746542 -88853241 + L1_Mus1 LINE L1 5954 6114 -453 3 1124 21 36 0 0 chr3 70746763 70746791 -88852992 + AT_rich Low_complexity Low_complexity 1 28 0 3 1124 242 240 47 19 chr3 70746950 70747056 -88852727 + T-rich Low_complexity Low_complexity 2 110 0 3 1124 246 310 88 20 chr3 70748517 70748665 -88851118 + L2 LINE L2 2197 2354 -1065 3 1124 1276 117 24 3 chr3 70749460 70749675 -88850108 + Lx2B LINE L1 5587 5810 -430 3 1124 524 198 9 0 chr3 70749672 70749778 -88850005 + Lx3C LINE L1 5984 6090 -886 3 1124 4319 136 21 45 chr3 70749779 70750679 -88849104 + RMER17A LTR ERVK 1 874 -15 3 1124 2015 206 162 14 chr3 70750707 70751481 -88848302 + Lx3C LINE L1 6086 6974 -2 3 1124 706 288 81 36 chr3 70751487 70751847 -88847936 + Lx9 LINE L1 5833 6208 -1436 3 1124 225 0 0 0 chr3 70751859 70751884 -88847899 + (CA)n Simple_repeat Simple_repeat 1 25 0 3 1124 1790 297 17 83 chr3 70751990 70752962 -88846821 - Lx4B LINE L1 -46 7004 6168 3 1124 395 230 11 22 chr3 70752963 70753052 -88846731 + RLTR22_Mur LTR ERVK 596 683 -1165 3 1124 261 0 0 0 chr3 70753242 70753271 -88846512 + (A)n Simple_repeat Simple_repeat 1 29 0 3 1124 1913 187 115 11 chr3 70753343 70753739 -88846044 - L1_Mur2 LINE L1 -234 5643 5242 3 1124 599 0 14 0 chr3 70753739 70753810 -88845973 + (TC)n Simple_repeat Simple_repeat 1 72 0 3 1124 303 28 0 0 chr3 70753810 70753846 -88845937 + (CA)n Simple_repeat Simple_repeat 1 36 0 3 1124 1913 187 115 11 chr3 70753846 70753919 -88845864 - L1_Mur2 LINE L1 -636 5241 5125 3 1124 306 131 49 0 chr3 70753916 70753977 -88845806 - L1_Mur3 LINE L1 -2824 3056 2993 3 1124 2322 262 43 131 chr3 70754083 70755059 -88844724 + Lx9 LINE L1 6324 7213 -431 3 1124 2241 261 100 9 chr3 70756247 70756996 -88842787 - Lx9 LINE L1 -2 7642 6826 3 1124 315 0 0 0 chr3 70757105 70757140 -88842643 + (TA)n Simple_repeat Simple_repeat 2 36 0 3 1124 459 0 0 0 chr3 70757619 70757670 -88842113 + (TA)n Simple_repeat Simple_repeat 1 51 0 3 1124 479 384 69 22 chr3 70757894 70758168 -88841615 + B4A SINE B4 2 288 -4 3 1124 243 0 0 0 chr3 70758300 70758327 -88841456 + (CA)n Simple_repeat Simple_repeat 2 28 0 3 1124 312 67 16 32 chr3 70758419 70758481 -88841302 + (TTG)n Simple_repeat Simple_repeat 1 61 0 3 1124 2973 105 2 52 chr3 70759266 70759769 -88840014 + L1_Mur1 LINE L1 4977 5454 -432 3 1124 462 242 57 16 chr3 70759769 70759891 -88839892 - B3A SINE B2 -71 127 1 3 1124 418 314 29 140 chr3 70760039 70760346 -88839437 + MLT1B LTR MaLR 117 389 -1 3 1124 278 180 116 9 chr3 70760583 70760695 -88839088 - Lx9 LINE L1 -1 7643 7520 3 1124 984 231 102 4 chr3 70760689 70760945 -88838838 + Lx9 LINE L1 7138 7418 -226 3 1124 331 29 28 56 chr3 70760987 70761059 -88838724 + (CAAAAA)n Simple_repeat Simple_repeat 2 71 0 3 1124 186 379 58 0 chr3 70761405 70761492 -88838291 - MIRm SINE MIR -122 154 63 3 1124 188 149 0 21 chr3 70761975 70762023 -88837760 + (TTAAA)n Simple_repeat Simple_repeat 4 50 0 3 1124 900 233 206 74 chr3 70762518 70763019 -88836764 - RMER2 LTR ERV1 0 567 1 3 1124 303 314 48 56 chr3 70763036 70763161 -88836622 + RMER12 LTR ERVK 736 859 -463 3 1124 598 285 82 53 chr3 70763177 70763518 -88836265 - L1MA6 LINE L1 -132 6168 5818 3 1124 3805 204 39 11 chr3 70763646 70764439 -88835344 - Lx4B LINE L1 -16 7042 6228 3 1124 2209 80 0 0 chr3 70764420 70764707 -88835076 - L1_Mus4 LINE L1 -197 6439 6153 3 1124 1211 111 22 6 chr3 70764840 70765022 -88834761 - B2_Mm2 SINE B2 -9 186 2 3 1124 563 212 138 43 chr3 70765409 70765658 -88834125 + Lx9 LINE L1 7311 7581 -63 3 1124 180 0 0 0 chr3 70765658 70765678 -88834105 + (TTG)n Simple_repeat Simple_repeat 2 21 0 3 1124 563 212 138 43 chr3 70765678 70765733 -88834050 + Lx9 LINE L1 7582 7644 0 3 1124 22 35 0 0 chr3 70765960 70765989 -88833794 + AT_rich Low_complexity Low_complexity 1 29 0 3 1124 575 307 98 64 chr3 70767114 70767581 -88832202 - Lx8 LINE L1 -30 7443 6961 3 1124 1909 92 1 1 chr3 70768096 70768378 -88831405 + L1_Mus1 LINE L1 5942 6225 -342 3 1124 2351 206 29 16 chr3 70768374 70768921 -88830862 + L1_Mur3 LINE L1 5112 5665 -215 3 1124 33 56 0 0 chr3 70769094 70769148 -88830635 + AT_rich Low_complexity Low_complexity 1 54 0 3 1124 368 301 128 62 chr3 70769169 70769442 -88830341 + B4A SINE B4 2 292 0 3 1124 324 47 0 0 chr3 70769442 70769556 -88830227 + L1Md_F2 LINE L1 6523 6582 0 3 1124 1086 77 0 14 chr3 70769612 70769747 -88830036 + B1_Mm SINE Alu 1 135 -12 3 1124 495 0 0 0 chr3 70769747 70769802 -88829981 + (CAAAA)n Simple_repeat Simple_repeat 3 57 0 3 1124 333 287 75 42 chr3 70770397 70770517 -88829266 - B1F2 SINE Alu -21 128 5 3 1124 560 365 5 22 chr3 70770410 70770595 -88829188 - ID_B1 SINE B4 -32 192 11 4 1124 21 0 0 0 chr3 70770843 70770864 -88828919 + AT_rich Low_complexity Low_complexity 1 21 0 4 1124 411 164 16 8 chr3 70771154 70771283 -88828500 + (TA)n Simple_repeat Simple_repeat 1 130 0 4 1124 24 53 0 0 chr3 70771440 70771478 -88828305 + AT_rich Low_complexity Low_complexity 1 38 0 4 1124 2944 270 86 31 chr3 70773263 70774358 -88825425 - Lx7 LINE L1 -3 7693 6539 4 1124 21 0 0 0 chr3 70774995 70775016 -88824767 + AT_rich Low_complexity Low_complexity 1 21 0 4 1124 1148 265 152 50 chr3 70775914 70776414 -88823369 + RMER2 LTR ERV1 1 551 -16 4 1124 1636 259 26 142 chr3 70776423 70777085 -88822698 - RMER19C LTR ERVK -25 586 2 4 1124 23 68 0 0 chr3 70777631 70777675 -88822108 + AT_rich Low_complexity Low_complexity 1 44 0 4 1124 185 62 83 0 chr3 70777682 70777730 -88822053 + (TA)n Simple_repeat Simple_repeat 1 52 0 4 1124 361 411 99 0 chr3 70777754 70777895 -88821888 - RSINE1 SINE B4 0 165 11 4 1125 2881 36 6 0 chr3 70780115 70780474 -88819309 - L1Md_A LINE L1 0 6582 6222 4 1125 810 62 0 0 chr3 70780474 70780571 -88819212 + L1Md_T LINE L1 6110 6206 -376 4 1125 627 324 13 40 chr3 70780576 70780801 -88818982 - B4 SINE B4 -71 221 3 4 1125 543 118 0 19 chr3 70782389 70782493 -88817290 + L1Md_F2 LINE L1 6469 6570 -12 4 1125 240 372 39 78 chr3 70782990 70783122 -88816661 - Lx9 LINE L1 -9 7464 7332 4 1125 365 70 0 17 chr3 70783122 70783180 -88816603 + (TA)n Simple_repeat Simple_repeat 1 57 0 4 1125 1390 334 106 23 chr3 70783180 70784074 -88815709 - Lx9 LINE L1 -212 7432 6505 4 1125 5542 132 9 8 chr3 70784085 70785030 -88814753 - L1_Mus4 LINE L1 -186 6450 5505 4 1125 227 250 0 0 chr3 70785077 70785125 -88814658 + (TG)n Simple_repeat Simple_repeat 2 49 0 4 1125 380 322 35 0 chr3 70787237 70787352 -88812431 + PB1 SINE Alu 9 127 0 4 1125 657 236 93 47 chr3 70787411 70787669 -88812114 + L1MEf LINE L1 728 997 -5203 4 1125 211 208 0 0 chr3 70787790 70787838 -88811945 + A-rich Low_complexity Low_complexity 5 52 0 4 1125 244 305 18 37 chr3 70788605 70788714 -88811069 + Lx7 LINE L1 7195 7301 -395 4 1125 8617 134 51 22 chr3 70788765 70790371 -88809412 - L1_Mur1 LINE L1 -910 4976 3324 4 1125 2852 161 10 8 chr3 70790368 70790880 -88808903 + L1_Mur1 LINE L1 5104 5616 -270 4 1125 232 185 49 0 chr3 70791197 70791278 -88808505 + (TA)n Simple_repeat Simple_repeat 1 85 0 4 1125 27 62 0 0 chr3 70791278 70791326 -88808457 + AT_rich Low_complexity Low_complexity 1 48 0 4 1125 587 284 123 56 chr3 70791330 70791995 -88807788 + L1M2 LINE L1 4273 4982 -1161 4 1125 1115 282 42 50 chr3 70792174 70792232 -88807551 - MTD LTR MaLR -45 374 312 4 1125 4643 62 5 10 chr3 70792232 70792846 -88806937 - L1Md_F2 LINE L1 -1 6581 5971 4 1125 1115 282 42 50 chr3 70792846 70793150 -88806633 - MTD LTR MaLR -108 311 15 4 1125 543 16 0 0 chr3 70793150 70793214 -88806569 + (CAA)n Simple_repeat Simple_repeat 2 65 0 4 1125 1115 282 42 50 chr3 70793214 70793227 -88806556 - MTD LTR MaLR -405 14 2 4 1125 741 353 68 4 chr3 70793254 70793604 -88806179 - Lx9 LINE L1 -842 6802 6322 4 1125 192 305 34 0 chr3 70793850 70793909 -88805874 + MIR SINE MIR 91 151 -111 4 1125 410 323 81 0 chr3 70794174 70794298 -88805485 + B1F SINE Alu 9 142 -7 4 1125 464 336 21 7 chr3 70794310 70794451 -88805332 + B1_Mur2 SINE Alu 6 148 -1 4 1125 22 0 0 0 chr3 70795366 70795388 -88804395 + AT_rich Low_complexity Low_complexity 1 22 0 4 1125 229 377 0 0 chr3 70795509 70795615 -88804168 + (TG)n Simple_repeat Simple_repeat 1 106 0 4 1125 6188 212 65 4 chr3 70796477 70797090 -88802693 - Lx4B LINE L1 -7 7051 6374 4 1125 4867 51 2 5 chr3 70797090 70797702 -88802081 - L1Md_F2 LINE L1 -1 6581 5972 4 1125 6441 190 29 2 chr3 70797702 70799392 -88800391 - Lx4B LINE L1 -685 6373 4645 4 1125 500 261 54 9 chr3 70799481 70799680 -88800103 - Lx9 LINE L1 -1714 5930 5689 4 1125 1306 291 33 67 chr3 70799785 70800397 -88799386 - Lx9 LINE L1 0 7644 7054 4 1125 736 279 23 37 chr3 70800387 70800703 -88799080 - Lx9 LINE L1 -582 5298 4974 4 1125 1031 52 41 0 chr3 70800918 70801090 -88798693 + (TCTA)n Simple_repeat Simple_repeat 2 180 0 4 1125 684 345 22 18 chr3 70801202 70801474 -88798309 + Lx9 LINE L1 6366 6638 -1006 4 1125 613 319 88 34 chr3 70802029 70802401 -88797382 + MLT2B3 LTR ERVL 1 491 -76 4 1125 482 0 17 0 chr3 70802401 70802459 -88797324 + (TCTA)n Simple_repeat Simple_repeat 3 61 0 4 1125 297 351 37 68 chr3 70802459 70802500 -88797283 + MLT2B3 LTR ERVL 492 530 -37 4 1125 237 277 24 12 chr3 70802514 70802598 -88797185 + (TCTA)n Simple_repeat Simple_repeat 4 88 0 4 1125 2529 82 6 0 chr3 70803093 70803435 -88796348 - L1_Mus1 LINE L1 0 6567 6224 4 1125 750 275 46 4 chr3 70805340 70805599 -88794184 + Lx9 LINE L1 6995 7264 -380 4 1125 362 208 23 6 chr3 70805804 70805978 -88793805 + (TATATG)n Simple_repeat Simple_repeat 1 177 0 4 1125 457 264 86 53 chr3 70805991 70806023 -88793760 + MT2B LTR ERVL 123 202 -399 4 1125 681 76 0 0 chr3 70806023 70806115 -88793668 + B1_Mus2 SINE Alu 1 92 -55 4 1125 457 264 86 53 chr3 70806115 70806143 -88793640 + MT2B LTR ERVL 203 279 -322 4 1125 251 315 0 14 chr3 70806420 70806494 -88793289 + MTEb LTR MaLR 287 359 -20 4 1125 255 324 134 21 chr3 70807468 70807610 -88792173 - MLT1B LTR MaLR -18 372 215 4 1125 648 26 0 0 chr3 70808334 70808412 -88791371 + (TC)n Simple_repeat Simple_repeat 1 78 0 4 1125 306 0 0 0 chr3 70808420 70808454 -88791329 + (TG)n Simple_repeat Simple_repeat 2 35 0 4 1125 4051 148 70 0 chr3 70808516 70809205 -88790578 + RMER19A LTR ERVK 1 737 0 4 1125 2453 175 236 38 chr3 70809854 70810484 -88789299 - RMER6A LTR ERVK 0 756 2 4 1125 21 36 0 0 chr3 70810699 70810727 -88789056 + AT_rich Low_complexity Low_complexity 1 28 0 4 1125 207 203 0 17 chr3 70811038 70811098 -88788685 + (TTTG)n Simple_repeat Simple_repeat 2 60 0 4 1125 919 140 0 0 chr3 70811465 70811608 -88788175 + B1_Mus1 SINE Alu 6 148 0 4 1125 14165 106 18 4 chr3 70811680 70813867 -88785916 + L1_Mus1 LINE L1 3728 5942 -625 4 1125 477 0 0 0 chr3 70813867 70813920 -88785863 + (CA)n Simple_repeat Simple_repeat 2 54 0 4 1125 7066 86 14 0 chr3 70813920 70814529 -88785254 + L1_Mus1 LINE L1 5943 6565 -2 4 1125 222 191 0 0 chr3 70814814 70814861 -88784922 + (TA)n Simple_repeat Simple_repeat 1 47 0 4 1125 21 100 0 0 chr3 70814869 70814939 -88784844 + AT_rich Low_complexity Low_complexity 1 70 0 4 1125 567 322 81 28 chr3 70815007 70815714 -88784069 - L1MA6 LINE L1 -205 6095 5352 4 1125 728 282 88 54 chr3 70815816 70816239 -88783544 - LTR37B LTR ERV1 -25 443 7 4 1125 23 0 0 0 chr3 70816420 70816443 -88783340 + AT_rich Low_complexity Low_complexity 1 23 0 4 1125 618 118 2 19 chr3 70817454 70817564 -88782219 + B1_Mus1 SINE Alu 1 111 -9 4 1125 28 0 0 0 chr3 70818869 70818897 -88780886 + AT_rich Low_complexity Low_complexity 1 28 0 4 1125 240 155 68 27 chr3 70820032 70820105 -88779678 - Lx9 LINE L1 0 7644 7569 4 1125 335 294 121 103 chr3 70821034 70821531 -88778252 + L1M3 LINE L1 3322 3852 -2288 4 1125 1628 63 0 0 chr3 70821548 70821755 -88778028 - L1_Mm LINE L1 -916 4967 4761 4 1125 1063 83 154 0 chr3 70821755 70821924 -88777859 + L1_Mus1 LINE L1 6370 6564 -3 4 1125 6777 50 0 0 chr3 70822151 70822992 -88776791 + L1Md_F2 LINE L1 5742 6582 0 4 1125 4626 168 18 38 chr3 70823003 70824136 -88775647 + L1Md_F LINE L1 214 1325 -5399 4 1125 1182 48 0 0 chr3 70824137 70824284 -88775499 + B1_Mus2 SINE Alu 1 147 0 4 1125 363 149 0 0 chr3 70824315 70824382 -88775401 + L1Md_F3 LINE L1 6508 6574 -10 4 1125 221 30 0 57 chr3 70824389 70824424 -88775359 + (CAAAA)n Simple_repeat Simple_repeat 2 34 0 4 1125 180 0 0 0 chr3 70824652 70824672 -88775111 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 4 1125 22 56 0 0 chr3 70824977 70825013 -88774770 + AT_rich Low_complexity Low_complexity 1 36 0 4 1125 508 229 0 37 chr3 70825186 70825295 -88774488 + Lx7 LINE L1 6838 6942 -754 4 1125 3594 97 2 11 chr3 70825351 70825875 -88773908 - L1Md_F2 LINE L1 -11 6571 6053 4 1125 16509 67 5 0 chr3 70825875 70828700 -88771083 - L1Md_F2 LINE L1 -88 6494 3655 4 1125 671 248 14 0 chr3 70829054 70829199 -88770584 + B1_Mur1 SINE Alu 2 148 -1 4 1125 354 129 0 0 chr3 70829199 70829261 -88770522 + (CA)n Simple_repeat Simple_repeat 1 62 0 4 1125 21 0 0 0 chr3 70829606 70829627 -88770156 + AT_rich Low_complexity Low_complexity 1 21 0 4 1125 26 30 0 0 chr3 70830352 70830385 -88769398 + AT_rich Low_complexity Low_complexity 1 33 0 4 1125 765 312 101 36 chr3 70831988 70832433 -88767350 - Charlie25 DNA MER1_type -1453 1071 598 4 1125 2814 74 42 5 chr3 70832703 70833085 -88766698 - MTA_Mm LTR MaLR 0 396 1 4 1125 7311 92 9 68 chr3 70833085 70834253 -88765530 - MTA_Mm-int LTR MaLR 0 1098 1 4 1125 2186 78 137 28 chr3 70834253 70834386 -88765397 - MTA_Mm LTR MaLR 0 396 269 4 1125 4516 115 10 68 chr3 70834386 70835180 -88764603 + RMER17A LTR ERVK 1 748 -3 4 1125 2186 78 137 28 chr3 70835180 70835403 -88764380 - MTA_Mm LTR MaLR -128 268 1 4 1125 2417 324 60 44 chr3 70835560 70835710 -88764073 - Lx5 LINE L1 -158 6818 6639 4 1125 309 51 0 0 chr3 70835710 70835749 -88764034 + (TTTTA)n Simple_repeat Simple_repeat 2 40 0 4 1125 2417 239 26 32 chr3 70835749 70836296 -88763487 - Lx5 LINE L1 -412 6638 6097 4 1125 2192 160 139 0 chr3 70836285 70836788 -88762995 + Lx5 LINE L1 5488 6073 -977 4 1125 16075 132 52 25 chr3 70836835 70838703 -88761080 + L1Md_F2 LINE L1 217 2087 -3796 4 1125 222 37 0 0 chr3 70838703 70838730 -88761053 + (TTA)n Simple_repeat Simple_repeat 3 29 0 4 1125 16075 98 20 30 chr3 70838730 70840331 -88759452 + L1Md_F2 LINE L1 2088 3710 -2173 4 1125 695 97 43 9 chr3 70840320 70840435 -88759348 + L1Md_F2 LINE L1 4214 4332 -1551 4 1125 1944 65 4 0 chr3 70840422 70840670 -88759113 + L1Md_F2 LINE L1 5337 5585 -298 4 1125 7291 82 2 6 chr3 70840671 70841659 -88758124 + L1Md_F2 LINE L1 5587 6570 -12 4 1125 671 308 160 34 chr3 70841720 70842076 -88757707 + MTD LTR MaLR 8 370 0 4 1125 1072 268 31 37 chr3 70842715 70843068 -88756715 - Lx9 LINE L1 -301 7343 6993 4 1125 334 316 92 0 chr3 70843158 70843256 -88756527 - B3A SINE B2 -37 161 55 4 1125 539 350 81 8 chr3 70843429 70843665 -88756118 + Lx8 LINE L1 7047 7299 -174 4 1125 388 314 85 27 chr3 70843748 70844043 -88755740 + Charlie1a DNA MER1_type 919 1230 -225 4 1125 2721 88 8 3 chr3 70844069 70844455 -88755328 - RLTR10 LTR ERVK -2 388 1 4 1125 285 223 0 0 chr3 70845881 70845975 -88753808 + (TA)n Simple_repeat Simple_repeat 1 94 0 4 1125 314 257 64 138 chr3 70846614 70846649 -88753134 - B2_Mm2 SINE B2 -5 190 162 4 1125 279 0 0 0 chr3 70846649 70846680 -88753103 + (TG)n Simple_repeat Simple_repeat 1 31 0 5 1125 444 257 64 138 chr3 70846680 70846847 -88752936 - B3A SINE B2 -34 161 3 4 1125 379 249 6 6 chr3 70846868 70847038 -88752745 + CT-rich Low_complexity Low_complexity 2 171 0 5 1125 201 74 0 0 chr3 70847080 70847107 -88752676 + (TCCC)n Simple_repeat Simple_repeat 3 29 0 5 1125 25 0 0 0 chr3 70847724 70847749 -88752034 + AT_rich Low_complexity Low_complexity 1 25 0 5 1125 2252 230 50 35 chr3 70848883 70849477 -88750306 + RLTR17 LTR ERVK 1 603 -89 5 1125 565 353 40 64 chr3 70849665 70849962 -88749821 - B4A SINE B4 -1 291 2 5 1125 270 378 58 15 chr3 70851935 70852072 -88747711 + B4 SINE B4 146 288 -4 5 1125 21 0 0 0 chr3 70852324 70852345 -88747438 + AT_rich Low_complexity Low_complexity 1 21 0 5 1125 379 356 80 4 chr3 70852345 70852607 -88747176 + Charlie5 DNA MER1_type 142 423 -2201 5 1125 21 0 0 0 chr3 70852781 70852802 -88746981 + AT_rich Low_complexity Low_complexity 1 21 0 5 1125 881 271 57 59 chr3 70853026 70853525 -88746258 - RMER2 LTR ERV1 -5 562 1 5 1125 411 56 0 0 chr3 70853579 70853633 -88746150 + (TG)n Simple_repeat Simple_repeat 1 54 0 5 1125 248 231 31 0 chr3 70853634 70853699 -88746084 + (TA)n Simple_repeat Simple_repeat 2 68 0 5 1125 2881 112 42 20 chr3 70853700 70854156 -88745627 + Lx LINE L1 6189 6654 0 5 1125 1131 305 72 8 chr3 70854432 70854935 -88744848 + Charlie5 DNA MER1_type 1257 1791 -833 5 1125 393 304 221 29 chr3 70854961 70855486 -88744297 + Charlie5 DNA MER1_type 1848 2473 -151 5 1125 1576 25 30 0 chr3 70855925 70856125 -88743658 - L1Md_F2 LINE L1 0 6582 6377 5 1125 6018 203 42 19 chr3 70857158 70858802 -88740981 - Lx5 LINE L1 -8 7042 5352 5 1125 261 54 27 0 chr3 70858867 70858904 -88740879 - Lx5 LINE L1 -519 5358 5321 5 1125 1035 67 0 0 chr3 70858907 70859041 -88740742 + L1_Mus2 LINE L1 6431 6564 -2 5 1125 457 167 12 60 chr3 70859108 70859191 -88740592 + ETnERV2-int LTR ERVK 7070 7148 -258 5 1125 2736 136 18 7 chr3 70859467 70859919 -88739864 + Lx3A LINE L1 6521 6977 -4 5 1125 4164 178 28 17 chr3 70859931 70860791 -88738992 - Lx5 LINE L1 -560 5317 4449 5 1125 684 0 0 0 chr3 70860791 70860867 -88738916 + (TTTC)n Simple_repeat Simple_repeat 1 76 0 5 1125 8018 48 0 6 chr3 70860871 70861858 -88737925 - L1Md_F3 LINE L1 -16 6568 5588 5 1125 2373 57 0 0 chr3 70861873 70862170 -88737613 + L1Md_F3 LINE L1 5231 5527 -356 5 1125 906 212 88 19 chr3 70862171 70862387 -88737396 - Lx5 LINE L1 -1427 4450 4220 5 1125 37986 30 1 0 chr3 70862396 70869226 -88730557 - L1Md_T LINE L1 0 6585 1 5 1125 3501 138 30 11 chr3 70869226 70869806 -88729977 - Lx5 LINE L1 -1640 4237 3646 5 1125 330 26 0 0 chr3 70869806 70869845 -88729938 + (TTG)n Simple_repeat Simple_repeat 1 39 0 5 1125 3501 138 30 11 chr3 70869845 70869900 -88729883 - Lx5 LINE L1 -2232 3645 3591 5 1125 3252 148 126 0 chr3 70869897 70870690 -88729093 - Lx5 LINE L1 -4025 1852 955 5 1125 231 308 95 34 chr3 70870692 70870840 -88728943 - RMER4B LTR ERVK -187 398 242 5 1125 300 172 0 0 chr3 70870849 70870907 -88728876 + CT-rich Low_complexity Low_complexity 3 60 0 5 1125 723 219 148 19 chr3 70870929 70871138 -88728645 - RMER4B LTR ERVK -329 256 21 5 1125 432 411 14 58 chr3 70871346 70871638 -88728145 - B4A SINE B4 -12 280 2 5 1125 22930 48 1 0 chr3 70871832 70874696 -88725087 + L1Md_F3 LINE L1 2720 5585 -298 5 1125 7632 60 9 0 chr3 70874697 70875672 -88724111 + L1Md_F3 LINE L1 5587 6570 -14 5 1125 267 54 0 0 chr3 70875701 70875738 -88724045 + (CAAAA)n Simple_repeat Simple_repeat 2 38 0 5 1125 267 286 28 28 chr3 70876620 70876728 -88723055 - MTE2b LTR MaLR 0 379 272 5 1125 1902 305 31 20 chr3 70877033 70877715 -88722068 - Lx7 LINE L1 -440 7256 6568 5 1125 2317 275 24 59 chr3 70877803 70878768 -88721015 - L1_Mur3 LINE L1 -105 5775 4845 5 1125 244 150 16 32 chr3 70878774 70878836 -88720947 + T-rich Low_complexity Low_complexity 2 62 0 5 1125 1680 112 41 4 chr3 70878905 70879175 -88720608 - L1_Mus1 LINE L1 0 6567 6288 5 1125 620 101 0 0 chr3 70879175 70879266 -88720517 + L1_Mm LINE L1 5535 5654 -535 5 1125 383 208 10 59 chr3 70879272 70879374 -88720409 - L1_Mur3 LINE L1 -1128 4752 4656 5 1125 231 125 69 35 chr3 70879406 70879464 -88720319 - L1M LINE L1 -729 5395 5336 5 1125 656 311 49 0 chr3 70879630 70879794 -88719989 + B4A SINE B4 2 173 -119 5 1125 516 295 32 18 chr3 70879988 70880156 -88719627 - ID_B1 SINE B4 -28 264 92 5 1125 3188 132 42 2 chr3 70880173 70880668 -88719115 - Lx3C LINE L1 -231 6745 6231 5 1125 3534 222 18 22 chr3 70880660 70881389 -88718394 + Lx5 LINE L1 6323 7048 -2 5 1125 2804 218 40 19 chr3 70881465 70882164 -88717619 - L1_Mur3 LINE L1 -1300 4580 3866 5 1125 935 260 80 11 chr3 70882164 70882514 -88717269 - ORR1D1 LTR MaLR 0 374 1 5 1125 2804 218 40 19 chr3 70882514 70882543 -88717240 - L1_Mur3 LINE L1 -2015 3865 3837 5 1125 420 158 0 0 chr3 70883736 70883831 -88715952 + (CA)n Simple_repeat Simple_repeat 2 96 0 5 1125 388 215 12 12 chr3 70883909 70883989 -88715794 + MTEb LTR MaLR 60 139 -240 5 1125 435 52 0 0 chr3 70884210 70884268 -88715515 + (TTTA)n Simple_repeat Simple_repeat 2 59 0 5 1125 8924 97 32 9 chr3 70884269 70885307 -88714476 - Lx3_Mus LINE L1 -36 6973 5920 5 1125 207 0 0 0 chr3 70885307 70885330 -88714453 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 5 1125 8924 97 32 9 chr3 70885330 70885620 -88714163 - Lx3_Mus LINE L1 -1090 5919 5617 5 1125 22 0 0 0 chr3 70885663 70885685 -88714098 + AT_rich Low_complexity Low_complexity 1 22 0 5 1125 1454 247 27 3 chr3 70886271 70886640 -88713143 + ORR1C1 LTR MaLR 1 378 0 5 1125 729 335 49 25 chr3 70887970 70888297 -88711486 + MTE2a LTR MaLR 3 337 -42 5 1125 29 47 0 0 chr3 70888654 70888697 -88711086 + AT_rich Low_complexity Low_complexity 1 43 0 5 1125 254 95 0 23 chr3 70889817 70889860 -88709923 + (CAAA)n Simple_repeat Simple_repeat 4 45 0 5 1125 1082 298 36 43 chr3 70890108 70890577 -88709206 + Lx7 LINE L1 6058 6523 -1173 5 1125 539 193 45 18 chr3 70890609 70890720 -88709063 - MTC LTR MaLR -3 418 305 5 1125 609 122 0 0 chr3 70890728 70890843 -88708940 + (TCTA)n Simple_repeat Simple_repeat 4 118 0 5 1125 972 300 3 40 chr3 70890857 70891183 -88708600 - Lx5 LINE L1 -18 7032 6719 5 1125 1836 222 47 27 chr3 70891216 70891824 -88707959 + Lx5 LINE L1 5448 6071 -979 5 1125 295 263 39 13 chr3 70891865 70891942 -88707841 - MTC-int LTR MaLR -800 458 380 5 1125 8908 12 0 0 chr3 70891942 70893449 -88706334 - L1Md_T LINE L1 0 6582 5109 5 1125 3768 14 0 0 chr3 70893449 70893878 -88705905 + L1Md_T LINE L1 4692 5120 -763 5 1125 1322 219 0 52 chr3 70893878 70894186 -88705597 - MTC-int LTR MaLR -867 391 100 5 1125 1109 245 152 2 chr3 70894193 70894607 -88705176 + Lx9 LINE L1 7169 7644 0 5 1125 691 356 55 42 chr3 70895326 70895801 -88703982 - Lx9 LINE L1 -333 7311 6831 5 1125 255 103 0 0 chr3 70896197 70896236 -88703547 + (TCCCC)n Simple_repeat Simple_repeat 3 41 0 5 1125 212 204 0 22 chr3 70896237 70896270 -88703513 + T-rich Low_complexity Low_complexity 13 45 0 5 1125 414 0 0 0 chr3 70896270 70896316 -88703467 + (TCCC)n Simple_repeat Simple_repeat 4 49 0 5 1125 212 204 0 22 chr3 70896316 70896327 -88703456 + T-rich Low_complexity Low_complexity 2 12 0 5 1125 1665 180 45 24 chr3 70896336 70896666 -88703117 - Lx4A LINE L1 -3 7055 6719 5 1125 441 0 0 0 chr3 70896670 70896719 -88703064 + (TC)n Simple_repeat Simple_repeat 1 49 0 5 1125 2309 180 13 15 chr3 70896719 70897176 -88702607 - Lx3A LINE L1 -17 6964 6509 5 1125 306 0 0 0 chr3 70897226 70897260 -88702523 + (T)n Simple_repeat Simple_repeat 1 34 0 5 1125 314 350 64 30 chr3 70898285 70898583 -88701200 - L1MA4 LINE L1 -279 6021 5714 5 1125 3171 155 36 27 chr3 70898718 70899302 -88700481 - Lx3A LINE L1 0 6981 6393 5 1125 1405 179 5 181 chr3 70899536 70899912 -88699871 + RMER19B LTR ERVK 1 310 -592 5 1125 330 115 0 0 chr3 70900573 70900625 -88699158 + (GAAAA)n Simple_repeat Simple_repeat 4 55 0 5 1125 479 122 9 36 chr3 70900669 70900780 -88699003 + L1_Mus4 LINE L1 6528 6635 -1 5 1125 344 336 61 30 chr3 70901027 70901159 -88698624 + B4A SINE B4 13 148 -144 5 1125 336 48 0 0 chr3 70901331 70901373 -88698410 + (CA)n Simple_repeat Simple_repeat 1 42 0 5 1125 1496 58 49 0 chr3 70901521 70901726 -88698057 - L1_Mus2 LINE L1 -2 6564 6350 5 1125 304 388 27 13 chr3 70901761 70901910 -88697873 + LTR69 LTR ERVL 381 531 -57 5 1125 278 346 37 12 chr3 70901924 70902088 -88697695 + LTR33A LTR ERVL 318 485 -35 5 1125 185 0 0 39 chr3 70903543 70903569 -88696214 + (TTTTTG)n Simple_repeat Simple_repeat 5 29 0 5 1125 5037 57 6 1 chr3 70903597 70904243 -88695540 - L1_Mus1 LINE L1 0 6567 5919 5 1125 25 51 0 0 chr3 70904310 70904349 -88695434 + AT_rich Low_complexity Low_complexity 1 39 0 5 1125 414 39 0 0 chr3 70904912 70904964 -88694819 + (TTTG)n Simple_repeat Simple_repeat 2 53 0 5 1125 368 270 70 0 chr3 70905109 70905224 -88694559 + B1F SINE Alu 27 149 0 5 1125 240 106 29 29 chr3 70905224 70905292 -88694491 + A-rich Low_complexity Low_complexity 5 72 0 5 1125 2241 142 20 0 chr3 70905302 70905654 -88694129 - Lx LINE L1 -343 6311 5953 5 1125 2043 132 6 3 chr3 70905654 70905989 -88693794 + Lx LINE L1 6319 6654 0 5 1125 1160 48 7 0 chr3 70906545 70906691 -88693092 + B1_Mus2 SINE Alu 1 147 0 5 1125 255 122 0 0 chr3 70906691 70906740 -88693043 + (A)n Simple_repeat Simple_repeat 1 49 0 5 1125 245 29 29 0 chr3 70907134 70907168 -88692615 + (TATAA)n Simple_repeat Simple_repeat 5 39 0 5 1125 210 143 0 0 chr3 70908357 70908392 -88691391 + (CATATA)n Simple_repeat Simple_repeat 5 39 0 5 1125 24 0 0 0 chr3 70909720 70909744 -88690039 + AT_rich Low_complexity Low_complexity 1 24 0 5 1126 29552 98 22 11 chr3 70910082 70915188 -88684595 + L1Md_F2 LINE L1 417 5581 -302 5 1126 7397 74 13 5 chr3 70915192 70916175 -88683608 + L1Md_F2 LINE L1 5592 6582 0 5 1126 367 130 58 0 chr3 70916303 70916372 -88683411 - ORR1B1 LTR MaLR 0 394 322 5 1126 913 195 11 22 chr3 70916379 70916557 -88683226 - ORR1B1 LTR MaLR -218 176 1 5 1126 452 391 76 27 chr3 70916822 70917085 -88682698 + MER70B LTR ERVL 10 285 -293 5 1126 1627 182 93 120 chr3 70917302 70917810 -88681973 + RMER6C LTR ERVK 121 614 -76 5 1126 293 0 27 0 chr3 70917810 70917847 -88681936 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 5 1126 309 333 54 16 chr3 70918119 70918305 -88681478 - L1MD LINE L1 -771 5375 5183 5 1126 687 46 0 0 chr3 70919006 70919093 -88680690 + (TC)n Simple_repeat Simple_repeat 2 88 0 5 1126 23 0 0 0 chr3 70919826 70919849 -88679934 + AT_rich Low_complexity Low_complexity 1 23 0 5 1126 38340 58 5 8 chr3 70921234 70927736 -88672047 - L1Md_T LINE L1 0 6582 98 5 1126 542 331 35 29 chr3 70927911 70928082 -88671701 - ORR1D2 LTR MaLR -198 172 1 5 1126 1079 294 36 19 chr3 70928424 70928788 -88670995 + ORR1D2 LTR MaLR 1 370 0 6 1126 1442 282 39 104 chr3 70929064 70929898 -88669885 + Lx8 LINE L1 4977 5730 -150 6 1126 357 43 0 0 chr3 70930001 70930048 -88669735 + (TG)n Simple_repeat Simple_repeat 2 48 0 6 1126 278 311 8 0 chr3 70930051 70930170 -88669613 + Lx9 LINE L1 7517 7636 -8 6 1126 463 355 35 10 chr3 70930177 70930467 -88669316 + Lx8 LINE L1 6189 6485 -988 6 1126 828 255 34 54 chr3 70930488 70930782 -88669001 - Lx7 LINE L1 0 7696 7409 6 1126 384 22 0 0 chr3 70930785 70930830 -88668953 + (CA)n Simple_repeat Simple_repeat 2 46 0 6 1126 606 96 0 0 chr3 70930830 70930934 -88668849 + (GA)n Simple_repeat Simple_repeat 1 104 0 6 1126 295 220 21 52 chr3 70930968 70931064 -88668719 - Lx7 LINE L1 -333 7363 7271 6 1126 557 231 0 71 chr3 70931096 70931278 -88668505 + Lx3A LINE L1 6805 6973 -8 6 1126 328 228 38 0 chr3 70931317 70931396 -88668387 - Lx7 LINE L1 -472 7224 7143 6 1126 380 152 25 0 chr3 70931397 70931476 -88668307 + T-rich Low_complexity Low_complexity 2 82 0 6 1126 625 290 18 0 chr3 70931476 70931645 -88668138 - Lx7 LINE L1 -549 7147 6976 6 1126 1031 97 0 14 chr3 70931711 70931858 -88667925 - B1_Mus1 SINE Alu -2 146 2 6 1126 651 330 43 20 chr3 70931902 70932205 -88667578 + Lx8 LINE L1 6627 6936 -537 6 1126 261 167 0 0 chr3 70932281 70932335 -88667448 + CT-rich Low_complexity Low_complexity 1 54 0 6 1126 347 337 74 17 chr3 70932950 70933125 -88666658 - MER70A LTR ERVL -35 437 253 6 1126 864 270 164 27 chr3 70934556 70934891 -88664892 - LTR53 LTR ERVL -110 409 29 6 1126 211 276 14 63 chr3 70934906 70935049 -88664734 + CT-rich Low_complexity Low_complexity 3 138 0 6 1126 262 336 0 96 chr3 70935404 70935519 -88664264 - RSINE1 SINE B4 -57 108 5 6 1126 4335 160 51 1 chr3 70936679 70937448 -88662335 + Lx3A LINE L1 6175 6981 0 6 1126 186 208 0 0 chr3 70937599 70937652 -88662131 + (TG)n Simple_repeat Simple_repeat 2 54 0 6 1126 380 303 125 6 chr3 70937892 70938068 -88661715 - Lx8 LINE L1 -478 6995 6799 6 1126 505 248 153 46 chr3 70938077 70938339 -88661444 + Lx8 LINE L1 7155 7444 -29 6 1126 321 47 0 0 chr3 70940065 70940108 -88659675 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 6 1126 576 256 75 0 chr3 70940111 70940244 -88659539 - B1_Mur1 SINE Alu -6 143 1 6 1126 243 103 0 0 chr3 70940769 70940808 -88658975 + (CA)n Simple_repeat Simple_repeat 1 39 0 6 1126 2121 165 31 10 chr3 70941354 70941746 -88658037 + Lx4A LINE L1 6657 7056 -2 6 1126 22 0 0 0 chr3 70941746 70941768 -88658015 + AT_rich Low_complexity Low_complexity 1 22 0 6 1126 23 33 0 0 chr3 70943193 70943223 -88656560 + AT_rich Low_complexity Low_complexity 1 30 0 6 1126 291 0 39 58 chr3 70943443 70943495 -88656288 + (TTTG)n Simple_repeat Simple_repeat 2 52 0 6 1126 180 0 0 0 chr3 70943800 70943820 -88655963 + (TTG)n Simple_repeat Simple_repeat 2 21 0 6 1126 1118 86 0 0 chr3 70943820 70943960 -88655823 - B1_Mus1 SINE Alu -8 140 1 6 1126 324 0 0 0 chr3 70944048 70944084 -88655699 + (TA)n Simple_repeat Simple_repeat 2 37 0 6 1126 1251 167 0 16 chr3 70944496 70944745 -88655038 - Lx LINE L1 0 6654 6410 6 1126 192 77 0 0 chr3 70946393 70946419 -88653364 + (CAAAA)n Simple_repeat Simple_repeat 3 28 0 6 1126 2794 107 37 24 chr3 70946595 70947056 -88652727 - Lx2 LINE L1 -2 6995 6529 6 1126 706 272 87 27 chr3 70947057 70947355 -88652428 + L1_Mur3 LINE L1 3765 4080 -1800 6 1126 541 230 26 197 chr3 70947355 70947740 -88652043 + L1_Mur3 LINE L1 5140 5458 -422 6 1126 926 261 153 3 chr3 70947779 70948079 -88651704 + ORR1D1 LTR MaLR 1 345 -29 6 1126 423 0 0 0 chr3 70948456 70948503 -88651280 + (CAA)n Simple_repeat Simple_repeat 2 48 0 6 1126 617 177 6 91 chr3 70949699 70949868 -88649915 + Lx3C LINE L1 6826 6991 -9 6 1126 679 131 15 30 chr3 70949885 70950019 -88649764 + Lx LINE L1 6518 6649 -5 6 1126 1910 121 35 13 chr3 70951210 70951520 -88648263 + Lx3B LINE L1 6655 6971 -2 6 1126 429 20 0 0 chr3 70951524 70951574 -88648209 + (TAA)n Simple_repeat Simple_repeat 1 50 0 6 1126 21 0 0 0 chr3 70952232 70952253 -88647530 + AT_rich Low_complexity Low_complexity 1 21 0 6 1126 295 283 106 0 chr3 70953007 70953120 -88646663 - B3 SINE B2 -3 213 89 6 1126 2201 65 6 46 chr3 70953120 70953445 -88646338 + L1Md_F3 LINE L1 6256 6567 -17 6 1126 22 0 0 0 chr3 70953445 70953467 -88646316 + AT_rich Low_complexity Low_complexity 1 22 0 6 1126 346 356 127 51 chr3 70954117 70954771 -88645012 + MLT-int LTR MaLR 4 723 -1012 6 1126 818 288 36 7 chr3 70955467 70955775 -88644008 + L1_Mur3 LINE L1 4783 5099 -781 6 1126 395 200 29 0 chr3 70955952 70956057 -88643726 - Lx9 LINE L1 -3 7641 7534 6 1126 450 65 0 0 chr3 70956065 70956127 -88643656 + (TG)n Simple_repeat Simple_repeat 2 63 0 6 1126 1032 197 159 0 chr3 70956137 70956401 -88643382 - Lx9 LINE L1 -178 7466 7161 6 1126 457 360 24 24 chr3 70956421 70956589 -88643194 - B3A SINE B2 -28 170 3 6 1126 31447 93 1 16 chr3 70956619 70961800 -88637983 + L1Md_F2 LINE L1 487 5587 -296 6 1126 7286 79 6 12 chr3 70961802 70962788 -88636995 + L1Md_F2 LINE L1 5590 6569 -13 6 1126 5176 156 2 9 chr3 70962792 70963665 -88636118 - Lx2 LINE L1 -5 6992 6126 6 1126 807 276 30 36 chr3 70963671 70964035 -88635748 - L1_Mur3 LINE L1 -6510 1202 841 6 1126 2470 164 14 14 chr3 70965440 70965860 -88633923 + Lx3B LINE L1 6097 6516 -457 6 1126 2394 162 40 18 chr3 70966015 70966461 -88633322 + Lx3B LINE L1 6517 6972 -9 6 1126 504 0 0 0 chr3 70967389 70967445 -88632338 + (TC)n Simple_repeat Simple_repeat 1 56 0 6 1126 1275 305 25 42 chr3 70968500 70969149 -88630634 + Lx8 LINE L1 5330 5993 -1480 6 1126 212 31 62 0 chr3 70969273 70969305 -88630478 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 6 1126 25 31 0 0 chr3 70969765 70969797 -88629986 + AT_rich Low_complexity Low_complexity 1 32 0 6 1126 441 118 0 0 chr3 70969900 70969976 -88629807 - L1Md_F2 LINE L1 -5 6577 6502 6 1126 21 36 0 0 chr3 70970011 70970039 -88629744 + AT_rich Low_complexity Low_complexity 1 28 0 6 1126 297 0 0 0 chr3 70970039 70970072 -88629711 + (TG)n Simple_repeat Simple_repeat 2 34 0 6 1126 1135 258 9 19 chr3 70970096 70970412 -88629371 - Lx9 LINE L1 -171 7473 7161 6 1126 481 323 55 18 chr3 70970413 70970577 -88629206 - B3A SINE B2 -18 180 11 6 1126 713 386 28 26 chr3 70970870 70971375 -88628408 + Lx8 LINE L1 6587 7092 -381 6 1126 297 311 112 31 chr3 70971584 70971780 -88628003 - MLT1C LTR MaLR -5 462 251 6 1126 1373 167 33 122 chr3 70971825 70972186 -88627597 - ORR1A4 LTR MaLR 0 329 1 6 1126 194 128 26 0 chr3 70972700 70972739 -88627044 + (TAA)n Simple_repeat Simple_repeat 3 42 0 6 1126 21 71 0 0 chr3 70972932 70972974 -88626809 + AT_rich Low_complexity Low_complexity 1 42 0 6 1126 886 358 24 12 chr3 70973288 70973616 -88626167 + MTD LTR MaLR 3 334 -85 6 1126 1030 211 22 13 chr3 70973618 70973844 -88625939 + Lx4A LINE L1 6829 7056 -2 6 1126 1167 216 9 0 chr3 70974738 70974956 -88624827 + URR1B DNA MER1_type 6 225 0 6 1126 497 65 0 0 chr3 70975043 70975105 -88624678 + Lx3C LINE L1 6171 6232 -744 6 1126 1103 140 96 10 chr3 70975105 70975314 -88624469 + Lx3C LINE L1 6748 6974 -2 6 1126 33 25 0 0 chr3 70975315 70975355 -88624428 + AT_rich Low_complexity Low_complexity 1 40 0 6 1126 822 306 141 31 chr3 70976721 70977329 -88622454 - Lx8 LINE L1 -35 7438 6764 6 1126 324 373 76 35 chr3 70977379 70977693 -88622090 - Lx8 LINE L1 -782 6691 6365 6 1126 267 103 0 0 chr3 70977830 70977869 -88621914 + (TATG)n Simple_repeat Simple_repeat 2 40 0 6 1126 538 213 114 12 chr3 70978682 70978848 -88620935 - B2_Mm2 SINE B2 -11 184 2 6 1126 7354 83 5 4 chr3 70978966 70979960 -88619823 - L1Md_F2 LINE L1 -1 6581 5587 6 1126 7817 82 6 12 chr3 70979984 70981080 -88618703 + L1_Mm LINE L1 4157 5246 -637 6 1126 400 241 0 18 chr3 70981084 70981194 -88618589 + Lx3A LINE L1 6865 6972 -9 6 1126 246 95 0 0 chr3 70981207 70981249 -88618534 + (TAA)n Simple_repeat Simple_repeat 1 42 0 6 1126 1805 186 32 0 chr3 70981468 70981813 -88617970 - Lx3B LINE L1 -193 6780 6425 6 1126 4808 153 32 6 chr3 70981811 70983007 -88616776 + Lx3B LINE L1 5179 6402 -571 6 1126 1169 63 11 17 chr3 70983014 70983192 -88616591 + (TTTC)n Simple_repeat Simple_repeat 2 178 0 6 1126 8063 57 1 8 chr3 70983210 70984875 -88614908 - L1Md_F2 LINE L1 -1 6581 4928 6 1126 679 211 6 6 chr3 70984925 70985092 -88614691 + CT-rich Low_complexity Low_complexity 2 168 0 6 1126 3649 144 18 2 chr3 70985110 70985806 -88613977 + L1_Mus4 LINE L1 5228 5937 -699 6 1126 679 361 61 47 chr3 70986402 70986875 -88612908 + RMER15-int LTR ERVL 4410 4889 -110 6 1126 326 338 49 21 chr3 70987107 70987249 -88612534 + RMER15 LTR ERVL 276 421 -154 6 1126 26 74 0 0 chr3 70987461 70987515 -88612268 + AT_rich Low_complexity Low_complexity 1 54 0 6 1126 1020 74 0 0 chr3 70987592 70987727 -88612056 + B1_Mus1 SINE Alu 4 138 -10 6 1126 303 28 0 0 chr3 70987882 70987918 -88611865 + (CA)n Simple_repeat Simple_repeat 1 36 0 6 1126 224 213 0 0 chr3 70988091 70988138 -88611645 + (TCCA)n Simple_repeat Simple_repeat 1 47 0 6 1126 301 260 19 0 chr3 70988158 70988262 -88611521 - Lx6 LINE L1 -182 7278 7173 6 1126 583 291 27 27 chr3 70988270 70988489 -88611294 + Lx8 LINE L1 6804 7022 -451 6 1126 358 353 74 48 chr3 70988526 70988943 -88610840 - L1M2 LINE L1 -2850 3293 2866 6 1126 441 0 0 0 chr3 70991333 70991382 -88608401 + (TA)n Simple_repeat Simple_repeat 2 50 0 6 1126 296 204 41 89 chr3 70992935 70993051 -88606732 - MLT1A LTR MaLR -258 116 1 6 1126 1227 61 5 32 chr3 70993715 70993901 -88605882 + L1Md_F2 LINE L1 6402 6582 0 6 1126 261 0 0 0 chr3 70993930 70993959 -88605824 + (CAA)n Simple_repeat Simple_repeat 2 30 0 6 1126 339 360 45 34 chr3 70994379 70994557 -88605226 - B3 SINE B2 -36 180 1 6 1126 471 101 0 0 chr3 70994567 70994646 -88605137 + (TG)n Simple_repeat Simple_repeat 2 80 0 6 1126 378 74 0 0 chr3 70995137 70995191 -88604592 + (TCTA)n Simple_repeat Simple_repeat 4 57 0 6 1126 369 0 0 0 chr3 70995483 70995524 -88604259 + (CAA)n Simple_repeat Simple_repeat 2 42 0 6 1126 1047 95 0 13 chr3 70995604 70995753 -88604030 - B1_Mus1 SINE Alu -1 147 1 6 1126 24 0 0 0 chr3 70996110 70996134 -88603649 + AT_rich Low_complexity Low_complexity 1 24 0 6 1126 3608 272 85 10 chr3 70996304 70997450 -88602333 + Lx7 LINE L1 5916 7147 -549 7 1126 2785 236 53 12 chr3 70997462 70998803 -88600980 - Lx6 LINE L1 -561 6899 5317 7 1126 1328 231 73 9 chr3 70999089 70999416 -88600367 - Lx7 LINE L1 -728 6968 6621 7 1126 30 0 0 0 chr3 70999788 70999818 -88599965 + AT_rich Low_complexity Low_complexity 1 30 0 7 1126 189 0 0 0 chr3 71000909 71000930 -88598853 + (TTTTG)n Simple_repeat Simple_repeat 5 25 0 1 1126 1282 122 5 5 chr3 71001028 71001242 -88598541 - Lx LINE L1 0 6654 6441 2 1126 5016 111 12 4 chr3 71001242 71002020 -88597763 - L1_Mur1 LINE L1 -2782 3104 2321 3 1126 3655 141 29 6 chr3 71002124 71002828 -88596955 + Lx LINE L1 5435 6165 -489 4 1126 1091 86 0 0 chr3 71002852 71003003 -88596780 - B2_Mm2 SINE B2 -44 151 1 5 1126 719 247 6 12 chr3 71003186 71003354 -88596429 + Lx6 LINE L1 7180 7346 -114 6 1126 32 57 0 0 chr3 71003378 71003431 -88596352 + AT_rich Low_complexity Low_complexity 1 53 0 7 1126 622 216 9 0 chr3 71003840 71003956 -88595827 + MTC LTR MaLR 1 117 -304 8 1126 308 43 22 0 chr3 71003960 71004006 -88595777 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 9 1126 2024 54 0 8 chr3 71004030 71004292 -88595491 - L1Md_F2 LINE L1 -3 6579 6320 1 1126 2153 65 4 0 chr3 71004294 71004571 -88595212 - L1Md_F2 LINE L1 -448 6134 5857 1 1126 1567 208 6 37 chr3 71004571 71004896 -88594887 + MTC LTR MaLR 107 421 0 8 1126 1015 345 92 14 chr3 71005123 71005860 -88593923 - RMER15-int LTR ERVL -3318 1681 887 1 1126 468 386 56 7 chr3 71006015 71006302 -88593481 - RMER15-int LTR ERVL -4317 682 382 1 1126 253 329 0 0 chr3 71006753 71006835 -88592948 + (TG)n Simple_repeat Simple_repeat 1 82 0 1 1126 24 32 0 0 chr3 71007143 71007174 -88592609 + AT_rich Low_complexity Low_complexity 1 31 0 1 1126 676 325 145 25 chr3 71007713 71008189 -88591594 - RMER15 LTR ERVL -2 573 41 1 1126 1917 185 3 14 chr3 71008484 71008851 -88590932 - Lx2B LINE L1 -2 6998 6636 1 1126 1041 191 9 5 chr3 71008855 71009076 -88590707 + Lx2B LINE L1 5994 6215 -785 1 1126 401 330 63 6 chr3 71009076 71009250 -88590533 - MLT1E3 LTR MaLR -440 184 1 1 1126 26 30 0 0 chr3 71009907 71009940 -88589843 + AT_rich Low_complexity Low_complexity 1 33 0 1 1126 21 0 0 0 chr3 71010313 71010334 -88589449 + AT_rich Low_complexity Low_complexity 1 21 0 1 1126 26 0 0 0 chr3 71011618 71011644 -88588139 + AT_rich Low_complexity Low_complexity 1 26 0 1 1126 23 0 0 0 chr3 71012198 71012221 -88587562 + AT_rich Low_complexity Low_complexity 1 23 0 2 1126 36 23 0 0 chr3 71012646 71012689 -88587094 + AT_rich Low_complexity Low_complexity 1 43 0 2 1126 655 171 23 15 chr3 71012765 71012896 -88586887 + Lx3B LINE L1 6826 6957 -16 2 1126 24 53 0 0 chr3 71012896 71012934 -88586849 + AT_rich Low_complexity Low_complexity 1 38 0 2 1126 21 57 0 0 chr3 71013431 71013466 -88586317 + AT_rich Low_complexity Low_complexity 1 35 0 2 1126 1051 88 7 7 chr3 71013775 71013924 -88585859 - MTB LTR MaLR -1 399 251 2 1126 594 111 0 3 chr3 71013950 71014045 -88585738 + MTB LTR MaLR 175 266 -141 2 1126 317 253 0 78 chr3 71013965 71014068 -88585715 - MTB LTR MaLR -312 95 1 2 1126 24 32 0 0 chr3 71014134 71014165 -88585618 + AT_rich Low_complexity Low_complexity 1 31 0 2 1126 8228 116 12 25 chr3 71014693 71015514 -88584269 - Lx LINE L1 -6 6648 5836 2 1126 186 71 0 0 chr3 71015514 71015542 -88584241 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 2 1126 8228 169 31 16 chr3 71015542 71016451 -88583332 - Lx LINE L1 -48 5835 4900 2 1126 2534 65 6 12 chr3 71016451 71016794 -88582989 + L1_Mus2 LINE L1 6226 6566 0 3 1126 8228 169 31 16 chr3 71016794 71017400 -88582383 - Lx LINE L1 -984 4899 4290 2 1126 2044 124 159 0 chr3 71017399 71017763 -88582020 + L1_Mus4 LINE L1 6030 6451 -185 3 1126 25 0 0 0 chr3 71019415 71019440 -88580343 + AT_rich Low_complexity Low_complexity 1 25 0 3 1126 1062 257 76 41 chr3 71019915 71020245 -88579538 + RMER19B LTR ERVK 142 662 -240 3 1126 3269 133 11 2 chr3 71020265 71020785 -88578998 - Lx3_Mus LINE L1 -181 6828 6304 3 1126 417 326 29 7 chr3 71020924 71021060 -88578723 - ORR1D2 LTR MaLR -191 179 41 3 1126 23 0 0 0 chr3 71021183 71021206 -88578577 + AT_rich Low_complexity Low_complexity 1 23 0 3 1126 1779 198 220 28 chr3 71021707 71022284 -88577499 - RMER6C LTR ERVK 0 690 3 3 1126 26 0 0 0 chr3 71022337 71022363 -88577420 + AT_rich Low_complexity Low_complexity 1 26 0 3 1126 24 53 0 0 chr3 71022638 71022676 -88577107 + AT_rich Low_complexity Low_complexity 1 38 0 3 1126 21 36 0 0 chr3 71022696 71022724 -88577059 + AT_rich Low_complexity Low_complexity 1 28 0 4 1126 338 140 0 0 chr3 71023088 71023138 -88576645 + HAL1-3A_ME LINE L1 1974 2023 -835 4 1126 293 257 92 71 chr3 71023774 71023958 -88575825 - MER57F LTR ERV1 -228 208 21 4 1126 207 0 0 0 chr3 71025315 71025338 -88574445 + (TG)n Simple_repeat Simple_repeat 2 24 0 4 1126 23 0 0 0 chr3 71025709 71025732 -88574051 + AT_rich Low_complexity Low_complexity 1 23 0 4 1126 880 305 81 29 chr3 71026074 71026459 -88573324 - Lx8 LINE L1 -11 7462 7058 4 1126 449 332 38 9 chr3 71026534 71026744 -88573039 + Lx8 LINE L1 6764 6979 -494 4 1126 575 123 8 0 chr3 71027242 71027364 -88572419 + (TAGA)n Simple_repeat Simple_repeat 4 126 0 4 1126 448 168 10 10 chr3 71027595 71027697 -88572086 + CT-rich Low_complexity Low_complexity 2 103 0 4 1126 552 56 0 0 chr3 71027697 71027769 -88572014 + (TC)n Simple_repeat Simple_repeat 2 73 0 4 1126 30 0 0 0 chr3 71027880 71027910 -88571873 + AT_rich Low_complexity Low_complexity 1 30 0 5 1126 1633 199 63 42 chr3 71029074 71029297 -88570486 - ORR1B1 LTR MaLR -8 386 156 5 1126 1177 76 0 45 chr3 71029297 71029334 -88570449 + L1_Mus2 LINE L1 6395 6431 -135 5 1126 3523 33 28 5 chr3 71029334 71029760 -88570023 + RLTR10C LTR ERVK 1 436 0 5 1126 1177 76 0 45 chr3 71029760 71029901 -88569882 + L1_Mus2 LINE L1 6432 6565 -1 5 1126 1633 199 63 42 chr3 71029901 71030055 -88569728 - ORR1B1 LTR MaLR -239 155 1 5 1126 198 0 0 0 chr3 71030400 71030422 -88569361 + (TA)n Simple_repeat Simple_repeat 2 23 0 5 1126 4868 107 24 23 chr3 71030534 71031282 -88568501 + L1_Mus4 LINE L1 5755 6503 -133 5 1126 723 59 0 19 chr3 71031285 71031389 -88568394 + B1_Mus2 SINE Alu 46 147 0 5 1126 307 382 49 0 chr3 71031612 71031735 -88568048 + RSINE1 SINE B4 3 131 -34 5 1126 1133 300 53 16 chr3 71032311 71032805 -88566978 - L1MA4 LINE L1 -311 5989 5478 5 1126 278 303 26 0 chr3 71032839 71032915 -88566868 - ID_B1 SINE B4 -48 176 99 5 1126 274 323 54 0 chr3 71032915 71032932 -88566851 - B1F1 SINE Alu -51 98 1 6 1126 350 205 25 8 chr3 71033080 71033198 -88566585 + Lx9 LINE L1 7517 7636 -8 6 1126 346 302 6 28 chr3 71033346 71033523 -88566260 - L1MA4 LINE L1 -891 5252 5080 5 1126 366 23 0 0 chr3 71033736 71033779 -88566004 + (TG)n Simple_repeat Simple_repeat 2 44 0 6 1126 342 45 0 0 chr3 71033852 71033896 -88565887 + (TG)n Simple_repeat Simple_repeat 1 44 0 6 1126 393 58 0 0 chr3 71033896 71033948 -88565835 + (GA)n Simple_repeat Simple_repeat 2 53 0 6 1126 261 305 80 20 chr3 71033972 71034173 -88565610 - L1MA4 LINE L1 -1512 4631 4419 5 1126 257 0 30 0 chr3 71034334 71034367 -88565416 + (TA)n Simple_repeat Simple_repeat 1 34 0 6 1126 1985 161 38 50 chr3 71034597 71035016 -88564767 - RMER1C Other Other 0 1342 929 6 1126 274 312 122 26 chr3 71035942 71036057 -88563726 - RSINE1 SINE B4 -29 136 11 6 1126 546 16 0 0 chr3 71036186 71036249 -88563534 + (GA)n Simple_repeat Simple_repeat 2 64 0 6 1126 215 250 27 14 chr3 71036321 71036407 -88563376 + L2b LINE L2 3330 3417 -9 6 1126 1006 249 13 67 chr3 71036445 71036759 -88563024 - Lx4B LINE L1 -6 7052 6756 7 1126 843 148 0 0 chr3 71037531 71037680 -88562103 + (GA)n Simple_repeat Simple_repeat 2 150 0 7 1126 3104 70 17 0 chr3 71039147 71039561 -88560222 + BGLII LTR ERVK 1 421 0 7 1126 3573 38 5 11 chr3 71039608 71040057 -88559726 + L1Md_F2 LINE L1 6134 6579 -3 7 1126 207 125 0 0 chr3 71040597 71040637 -88559146 + (ATG)n Simple_repeat Simple_repeat 2 41 0 7 1126 257 0 30 0 chr3 71040637 71040670 -88559113 + (CA)n Simple_repeat Simple_repeat 1 34 0 7 1127 42 65 0 0 chr3 71041035 71041112 -88558671 + AT_rich Low_complexity Low_complexity 1 77 0 7 1127 665 281 16 204 chr3 71041176 71041690 -88558093 - RLTR23 LTR ERV1 0 430 14 7 1127 21 0 0 0 chr3 71041809 71041830 -88557953 + AT_rich Low_complexity Low_complexity 1 21 0 7 1127 301 93 37 0 chr3 71041889 71041943 -88557840 + (TA)n Simple_repeat Simple_repeat 2 57 0 7 1127 441 0 0 0 chr3 71042211 71042260 -88557523 + (TA)n Simple_repeat Simple_repeat 2 50 0 8 1127 279 375 0 50 chr3 71042376 71042477 -88557306 + Tigger7 DNA MER2_type 2396 2491 0 8 1127 9483 95 36 9 chr3 71043555 71043771 -88556012 - Lx3_Mus LINE L1 -1 7008 6801 8 1127 4195 103 244 78 chr3 71043771 71044657 -88555126 + RLTR13D4 LTR ERVK 1 1033 0 8 1127 16636 96 18 6 chr3 71044657 71047931 -88551852 - Lx3_Mus LINE L1 -209 6800 3474 8 1127 386 111 0 0 chr3 71048050 71048104 -88551679 - ORR1A2 LTR MaLR 0 346 293 8 1127 1055 105 0 0 chr3 71048135 71048278 -88551505 - B1_Mus1 SINE Alu 0 148 6 8 1127 1597 166 34 13 chr3 71048246 71048551 -88551232 - ORR1A2 LTR MaLR -21 308 1 8 1127 28 0 0 0 chr3 71048623 71048651 -88551132 + AT_rich Low_complexity Low_complexity 1 28 0 8 1127 470 348 29 5 chr3 71049119 71049324 -88550459 + MLT1A1 LTR MaLR 195 404 -4 8 1127 441 0 0 0 chr3 71050325 71050374 -88549409 + (CA)n Simple_repeat Simple_repeat 2 50 0 8 1127 1001 304 30 28 chr3 71050374 71050836 -88548947 + L1_Mur3 LINE L1 3868 4340 -1546 8 1127 30 69 0 0 chr3 71051244 71051302 -88548481 + AT_rich Low_complexity Low_complexity 1 58 0 9 1127 834 178 71 11 chr3 71051364 71051546 -88548237 - ORR1B1 LTR MaLR 0 394 202 9 1127 3308 122 0 2 chr3 71051547 71052094 -88547689 + L1_Mus3 LINE L1 5387 5932 -706 9 1127 2043 136 81 0 chr3 71052096 71052465 -88547318 - Lx LINE L1 -6 6648 6250 9 1127 3357 80 33 0 chr3 71052467 71052927 -88546856 + Lx LINE L1 5759 6233 -421 9 1127 24 0 0 0 chr3 71053639 71053663 -88546120 + AT_rich Low_complexity Low_complexity 1 24 0 9 1127 338 115 0 16 chr3 71054800 71054862 -88544921 + (GAAA)n Simple_repeat Simple_repeat 2 62 0 9 1127 222 268 0 40 chr3 71054947 71055021 -88544762 - PB1D7 SINE Alu -39 81 11 9 1127 1904 322 111 43 chr3 71055170 71056295 -88543488 - Lx5 LINE L1 0 7050 5849 9 1127 1209 161 0 25 chr3 71056293 71056528 -88543255 + L1_Mur3 LINE L1 4756 4984 -893 8 1127 5344 156 83 86 chr3 71056521 71057726 -88542057 + Lx2A LINE L1 5797 6998 -10 9 1127 615 51 0 0 chr3 71057726 71057805 -88541978 + (TAAAA)n Simple_repeat Simple_repeat 2 80 0 9 1127 2751 239 62 7 chr3 71057820 71058078 -88541705 + L1_Mur3 LINE L1 4968 5227 -653 8 1127 474 18 0 0 chr3 71058078 71058133 -88541650 + (TG)n Simple_repeat Simple_repeat 2 56 0 1 1127 616 12 12 12 chr3 71058133 71058214 -88541569 + (TAGA)n Simple_repeat Simple_repeat 1 82 0 1 1127 2751 239 62 7 chr3 71058214 71058715 -88541068 + L1_Mur3 LINE L1 5228 5769 -111 8 1127 320 138 0 15 chr3 71058727 71058793 -88540990 + (TA)n Simple_repeat Simple_repeat 2 66 0 1 1127 25 65 0 0 chr3 71058971 71059017 -88540766 + AT_rich Low_complexity Low_complexity 1 46 0 1 1127 938 123 7 14 chr3 71059111 71059122 -88540661 - B1_Mm SINE Alu 0 147 138 1 1127 468 0 0 0 chr3 71059122 71059174 -88540609 + (TTTTG)n Simple_repeat Simple_repeat 2 53 0 1 1127 938 123 7 14 chr3 71059174 71059310 -88540473 - B1_Mm SINE Alu -10 137 1 1 1127 384 294 90 43 chr3 71059345 71059533 -88540250 - RMER12 LTR ERVK -26 1296 1100 1 1127 2064 205 40 24 chr3 71059828 71060528 -88539255 - RLTR22_Mur LTR ERVK -1035 813 1 1 1127 2470 176 130 33 chr3 71061949 71062695 -88537088 - RMER6C LTR ERVK -4 716 1 1 1127 2476 197 52 16 chr3 71063499 71063994 -88535789 + RLTR11A LTR ERVK 1 513 -15 1 1127 200 330 9 36 chr3 71064033 71064143 -88535640 + CT-rich Low_complexity Low_complexity 2 108 0 1 1127 26 50 0 0 chr3 71064659 71064699 -88535084 + AT_rich Low_complexity Low_complexity 1 40 0 1 1127 251 274 63 38 chr3 71064771 71064806 -88534977 + B4 SINE B4 51 87 -205 1 1127 467 276 32 8 chr3 71064806 71064930 -88534853 + B1_Mus2 SINE Alu 1 127 -20 1 1127 31 26 0 0 chr3 71065136 71065174 -88534609 + AT_rich Low_complexity Low_complexity 1 38 0 1 1127 23 33 0 0 chr3 71066610 71066640 -88533143 + AT_rich Low_complexity Low_complexity 1 30 0 1 1127 1416 258 17 17 chr3 71066724 71067079 -88532704 + ORR1D1 LTR MaLR 9 363 -11 1 1127 2141 239 78 20 chr3 71067571 71068170 -88531613 - Lx2B LINE L1 -10 6990 6357 1 1127 276 30 0 0 chr3 71068240 71068273 -88531510 + (CA)n Simple_repeat Simple_repeat 2 34 0 1 1127 342 0 0 0 chr3 71068274 71068312 -88531471 + (TA)n Simple_repeat Simple_repeat 2 39 0 1 1127 210 143 0 0 chr3 71068880 71068915 -88530868 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 1 1127 458 281 15 0 chr3 71069072 71069207 -88530576 + L1_Mur2 LINE L1 135 271 -6441 1 1127 3996 136 48 19 chr3 71069201 71069934 -88529849 + Lx4A LINE L1 3977 4730 -1147 1 1127 4151 72 0 2 chr3 71069933 71070463 -88529320 - L1Md_F2 LINE L1 -141 6441 5913 1 1127 622 57 9 9 chr3 71070463 71070569 -88529214 + L1Md_F2 LINE L1 6476 6581 -1 1 1127 216 86 0 0 chr3 71070854 71070889 -88528894 + (CAA)n Simple_repeat Simple_repeat 2 36 0 1 1127 7851 170 15 4 chr3 71070895 71073096 -88526687 + Lx4A LINE L1 4710 6940 -118 1 1127 28 29 0 0 chr3 71073160 71073195 -88526588 + AT_rich Low_complexity Low_complexity 1 35 0 1 1127 230 327 92 25 chr3 71073822 71073985 -88525798 - B4 SINE B4 -114 178 5 1 1127 301 389 65 0 chr3 71073986 71074125 -88525658 - B1F SINE Alu 0 149 2 1 1127 186 43 0 0 chr3 71075418 71075441 -88524342 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 1 1127 229 293 13 0 chr3 71075496 71075571 -88524212 - B1_Mur2 SINE Alu -8 141 66 1 1127 23 0 0 0 chr3 71075643 71075666 -88524117 + AT_rich Low_complexity Low_complexity 1 23 0 1 1127 5296 104 26 16 chr3 71075922 71076774 -88523009 - Lx3C LINE L1 -1314 5662 4804 1 1127 6547 107 16 23 chr3 71076774 71077809 -88521974 + Lx3_Mus LINE L1 5974 7001 -8 1 1127 2099 212 117 2 chr3 71078155 71078173 -88521610 - RMER15 LTR ERVL -16 559 542 1 1127 465 103 0 0 chr3 71078173 71078241 -88521542 + (CA)n Simple_repeat Simple_repeat 2 69 0 1 1127 2099 212 117 2 chr3 71078241 71078709 -88521074 - RMER15 LTR ERVL -34 541 18 1 1127 460 330 38 30 chr3 71078711 71078973 -88520810 - RLTR19 LTR ERVK -7 499 240 1 1127 324 0 0 0 chr3 71079110 71079146 -88520637 + (TG)n Simple_repeat Simple_repeat 1 36 0 1 1127 25 51 0 0 chr3 71079423 71079462 -88520321 + AT_rich Low_complexity Low_complexity 1 39 0 1 1127 570 352 25 40 chr3 71081013 71081214 -88518569 + B4A SINE B4 5 202 -90 1 1127 548 215 329 43 chr3 71081594 71081873 -88517910 + Lx4B LINE L1 6682 7040 -18 1 1127 525 71 0 0 chr3 71081879 71081949 -88517834 + (TA)n Simple_repeat Simple_repeat 1 70 0 1 1127 21 0 0 0 chr3 71082500 71082521 -88517262 + AT_rich Low_complexity Low_complexity 1 21 0 1 1127 22 0 0 0 chr3 71083113 71083135 -88516648 + AT_rich Low_complexity Low_complexity 1 22 0 1 1127 32 43 0 0 chr3 71083354 71083400 -88516383 + AT_rich Low_complexity Low_complexity 1 46 0 1 1127 381 43 0 0 chr3 71084247 71084294 -88515489 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 1127 2310 100 61 6 chr3 71084492 71084720 -88515063 + L1_Mus3 LINE L1 6212 6453 -185 1 1127 210 37 0 0 chr3 71084720 71084747 -88515036 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 1127 2310 100 61 6 chr3 71084747 71084880 -88514903 + L1_Mus3 LINE L1 6454 6593 -45 1 1127 2082 189 115 22 chr3 71085229 71085732 -88514051 + RMER6C LTR ERVK 141 690 0 1 1127 1004 90 0 8 chr3 71085770 71085904 -88513879 + B1_Mus2 SINE Alu 1 133 -14 1 1127 267 31 0 0 chr3 71086960 71086992 -88512791 + (TG)n Simple_repeat Simple_repeat 2 33 0 1 1127 29 60 0 0 chr3 71087378 71087428 -88512355 + AT_rich Low_complexity Low_complexity 1 50 0 1 1127 1358 127 9 9 chr3 71087879 71088102 -88511681 - L1_Mus3 LINE L1 0 6638 6416 1 1127 272 293 30 20 chr3 71088739 71088840 -88510943 - Charlie8 DNA MER1_type -1960 468 367 1 1127 735 44 0 0 chr3 71089158 71089249 -88510534 + (TA)n Simple_repeat Simple_repeat 1 91 0 1 1127 2965 85 12 2 chr3 71089896 71090308 -88509475 - BGLII LTR ERVK -2 419 4 1 1127 831 106 0 0 chr3 71090308 71090450 -88509333 + (CA)n Simple_repeat Simple_repeat 2 143 0 1 1127 700 277 166 16 chr3 71090453 71090706 -88509077 - RLTR18B LTR ERVK -32 480 190 1 1127 2570 39 0 0 chr3 71090714 71091026 -88508757 + L1Md_A LINE L1 6271 6582 0 1 1127 359 318 0 0 chr3 71091824 71091909 -88507874 + B4A SINE B4 1 85 -207 1 1127 429 151 0 0 chr3 71092088 71092174 -88507609 + (CA)n Simple_repeat Simple_repeat 1 86 0 1 1127 567 254 215 0 chr3 71093532 71093709 -88506074 - B3 SINE B2 -1 215 1 1 1127 513 0 0 0 chr3 71093888 71093945 -88505838 + (TA)n Simple_repeat Simple_repeat 1 57 0 1 1127 880 70 16 0 chr3 71094094 71094223 -88505560 + (TTCTC)n Simple_repeat Simple_repeat 2 132 0 1 1127 359 233 8 57 chr3 71094258 71094381 -88505402 - Lx4B LINE L1 -4 7054 6938 1 1127 285 198 0 0 chr3 71094383 71094464 -88505319 + (CA)n Simple_repeat Simple_repeat 2 82 0 1 1127 963 229 13 25 chr3 71094464 71094702 -88505081 - Lx5 LINE L1 -143 6907 6673 1 1127 298 377 52 72 chr3 71094702 71095008 -88504775 + Arthur1B DNA Tip100 57 356 -869 1 1127 387 0 0 0 chr3 71095107 71095150 -88504633 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 1127 585 0 0 0 chr3 71095150 71095214 -88504569 + (GA)n Simple_repeat Simple_repeat 2 66 0 1 1127 2138 115 0 61 chr3 71095271 71095615 -88504168 - ORR1A2 LTR MaLR 0 327 5 1 1127 25 0 0 0 chr3 71096576 71096601 -88503182 + AT_rich Low_complexity Low_complexity 1 25 0 1 1127 227 176 0 19 chr3 71096765 71096817 -88502966 - Lx8 LINE L1 -9 7464 7414 1 1127 264 283 21 11 chr3 71096810 71096903 -88502880 - Lx8 LINE L1 -1014 6459 6366 1 1127 22 0 0 0 chr3 71098457 71098479 -88501304 + AT_rich Low_complexity Low_complexity 1 22 0 1 1127 554 225 176 20 chr3 71098479 71098633 -88501150 - Lx9 LINE L1 0 7644 7472 1 1127 441 0 0 0 chr3 71098633 71098682 -88501101 + (TC)n Simple_repeat Simple_repeat 1 49 0 1 1127 554 225 176 20 chr3 71098682 71098822 -88500961 - Lx9 LINE L1 -173 7471 7304 1 1127 1509 148 27 157 chr3 71098827 71099196 -88500587 + ORR1A4 LTR MaLR 1 321 -8 1 1127 3620 207 78 34 chr3 71099200 71100260 -88499523 + ORR1A4-int LTR MaLR 1 1751 -212 1 1127 204 0 26 53 chr3 71100260 71100298 -88499485 + (TTTTG)n Simple_repeat Simple_repeat 1 37 0 1 1127 3620 206 62 109 chr3 71100298 71100636 -88499147 + ORR1A4-int LTR MaLR 1217 1769 -194 1 1127 923 187 0 6 chr3 71100636 71100808 -88498975 + ORR1A4 LTR MaLR 224 394 0 1 1127 271 171 26 0 chr3 71100872 71100948 -88498835 + CT-rich Low_complexity Low_complexity 3 80 0 1 1127 200 274 12 0 chr3 71100991 71101075 -88498708 + (TA)n Simple_repeat Simple_repeat 1 85 0 1 1127 268 296 9 9 chr3 71101187 71101296 -88498487 - Lx7 LINE L1 -3 7693 7585 1 1127 293 225 33 8 chr3 71101497 71101618 -88498165 + (TA)n Simple_repeat Simple_repeat 1 124 0 1 1127 285 51 0 0 chr3 71102742 71102781 -88497002 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 1 1127 1097 69 7 0 chr3 71102784 71102929 -88496854 - B1_Mm SINE Alu 0 147 2 1 1127 598 343 74 25 chr3 71103040 71103282 -88496501 + B4 SINE B4 21 274 -18 1 1127 375 132 0 0 chr3 71103355 71103423 -88496360 + (CAGA)n Simple_repeat Simple_repeat 4 71 0 1 1127 345 252 27 36 chr3 71103423 71103534 -88496249 + HAL1-3A_ME LINE L1 1976 2085 -773 1 1127 661 280 5 36 chr3 71104138 71104357 -88495426 + B3 SINE B2 2 213 -3 1 1127 282 73 0 0 chr3 71104399 71104440 -88495343 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 1127 265 333 43 74 chr3 71105155 71105317 -88494466 - ORR1E LTR MaLR -139 220 64 1 1127 4155 148 58 4 chr3 71105486 71106213 -88493570 + Lx2B LINE L1 6226 6991 -9 1 1127 329 332 177 13 chr3 71106459 71106764 -88493019 + Lx8 LINE L1 7110 7464 -9 1 1127 33542 92 9 6 chr3 71106926 71113214 -88486569 - L1Md_F2 LINE L1 -12 6570 261 1 1127 1658 142 7 7 chr3 71113356 71113647 -88486136 + L1_Mus4 LINE L1 6345 6635 -1 1 1127 1134 131 11 0 chr3 71113667 71113843 -88485940 + B2_Mm1t SINE B2 1 178 -15 1 1127 379 80 301 19 chr3 71113872 71113980 -88485803 + B2_Mm2 SINE B2 48 189 -6 1 1127 243 312 136 23 chr3 71113992 71114346 -88485437 + L1M3 LINE L1 4461 4854 -1286 1 1127 227 116 47 0 chr3 71114812 71114855 -88484928 + G-rich Low_complexity Low_complexity 3 47 0 1 1127 1065 128 0 0 chr3 71114866 71115046 -88484737 + (GGA)n Simple_repeat Simple_repeat 1 180 0 1 1127 3374 168 10 0 chr3 71115055 71115664 -88484119 + Lx2A1 LINE L1 6392 7006 -2 1 1127 741 188 0 0 chr3 71115669 71115818 -88483965 + GA-rich Low_complexity Low_complexity 4 152 0 2 1127 3968 155 57 19 chr3 71117057 71117877 -88481906 + Lx4B LINE L1 2822 3672 -2205 2 1127 6258 187 41 29 chr3 71117875 71118901 -88480882 + Lx4B LINE L1 4497 5573 -304 2 1127 1101 122 11 0 chr3 71118901 71119082 -88480701 - L1_Mus3 LINE L1 -6 6632 6450 2 1127 6258 191 29 22 chr3 71119082 71119605 -88480178 + Lx4B LINE L1 5574 6068 -990 2 1127 2281 183 161 14 chr3 71119596 71120116 -88479667 + Lx4B LINE L1 6451 7047 -11 2 1127 392 221 17 17 chr3 71120223 71120338 -88479445 - Lx2B LINE L1 -2 6998 6884 2 1127 381 147 0 120 chr3 71120336 71120444 -88479339 + L1_Mm LINE L1 4569 4663 -1220 2 1127 1446 79 0 5 chr3 71120444 71120648 -88479135 - L1Md_F2 LINE L1 -12 6570 6368 2 1127 2628 49 0 0 chr3 71120648 71120976 -88478807 + L1Md_F2 LINE L1 5653 5980 -602 2 1127 2922 89 5 5 chr3 71120991 71121396 -88478387 - L1_Mus2 LINE L1 -6 6560 6156 2 1127 2605 38 0 0 chr3 71121401 71121714 -88478069 + L1_Mus2 LINE L1 5651 5963 -603 2 1127 303 190 61 37 chr3 71121691 71121773 -88478010 + Lx2B LINE L1 4622 4705 -1172 2 1127 775 149 7 14 chr3 71121740 71121883 -88477900 - L1_Mur2 LINE L1 -679 5198 5057 2 1127 5729 181 37 3 chr3 71121881 71123169 -88476614 + Lx2B LINE L1 4701 6040 -960 2 1127 345 248 82 34 chr3 71123868 71123893 -88475890 - Lx3A LINE L1 0 7009 6986 2 1127 297 0 0 0 chr3 71123893 71123926 -88475857 + (TTTA)n Simple_repeat Simple_repeat 1 33 0 2 1127 430 207 26 25 chr3 71123926 71124046 -88475737 - Lx3A LINE L1 -24 6985 6847 2 1127 351 0 0 0 chr3 71124081 71124120 -88475663 + (CA)n Simple_repeat Simple_repeat 2 40 0 2 1127 459 0 0 0 chr3 71124120 71124170 -88475613 + (TA)n Simple_repeat Simple_repeat 1 51 0 2 1127 1002 115 0 0 chr3 71125047 71125203 -88474580 + (TA)n Simple_repeat Simple_repeat 1 156 0 2 1127 3778 88 12 9 chr3 71125536 71126096 -88473687 + L1_Mur1 LINE L1 3391 3952 -1934 2 1127 3230 111 11 2 chr3 71126094 71126571 -88473212 + L1_Mur1 LINE L1 5273 5753 -133 2 1127 2393 181 149 28 chr3 71126654 71127199 -88472584 - RMER19C LTR ERVK 0 611 1 2 1127 30516 98 3 1 chr3 71127392 71132399 -88467384 + L1Md_F2 LINE L1 570 5585 -298 2 1127 7106 95 0 4 chr3 71132400 71133390 -88466393 + L1Md_F2 LINE L1 5587 6572 -10 2 1127 184 294 0 0 chr3 71133860 71133911 -88465872 - L2c LINE L2 0 3387 3337 2 1127 22 0 0 0 chr3 71134126 71134148 -88465635 + AT_rich Low_complexity Low_complexity 1 22 0 2 1127 246 358 188 5 chr3 71134588 71134768 -88465015 + MER20 DNA MER1_type 6 218 -1 2 1127 563 266 0 38 chr3 71134970 71135103 -88464680 - RMER10A LTR ERVL -314 128 1 2 1127 185 139 23 0 chr3 71135193 71135236 -88464547 + (CAA)n Simple_repeat Simple_repeat 2 45 0 2 1127 23 33 0 0 chr3 71135560 71135590 -88464193 + AT_rich Low_complexity Low_complexity 1 30 0 2 1127 2459 59 0 12 chr3 71135821 71136148 -88463635 - L1_Mus1 LINE L1 -1 6566 6244 2 1127 1064 164 128 0 chr3 71136958 71137102 -88462681 + L1_Mur1 LINE L1 4485 4636 -1250 2 1127 989 89 0 7 chr3 71137102 71137249 -88462534 + (CAAAA)n Simple_repeat Simple_repeat 4 149 0 2 1127 1064 164 128 0 chr3 71137249 71137330 -88462453 + L1_Mur1 LINE L1 4637 4738 -1148 2 1127 401 344 15 0 chr3 71137975 71138106 -88461677 - RSINE1 SINE B4 -28 137 5 2 1127 408 40 0 0 chr3 71138865 71138915 -88460868 + (CA)n Simple_repeat Simple_repeat 1 50 0 2 1127 291 287 122 27 chr3 71139172 71139319 -88460464 + MER110 LTR ERV1 283 443 -48 2 1127 283 355 8 8 chr3 71139386 71139511 -88460272 - Kanga1c DNA Tc2 -485 244 120 2 1127 21 0 0 0 chr3 71139924 71139945 -88459838 + AT_rich Low_complexity Low_complexity 1 21 0 2 1127 243 271 0 0 chr3 71140630 71140700 -88459083 - MTE2a LTR MaLR 0 379 310 2 1127 900 0 0 0 chr3 71141082 71141182 -88458601 + (TTC)n Simple_repeat Simple_repeat 3 102 0 2 1127 234 337 46 96 chr3 71141435 71141632 -88458151 - RMER15 LTR ERVL 0 575 389 2 1127 2735 81 66 0 chr3 71141839 71142234 -88457549 - BGLII LTR ERVK 0 421 1 2 1127 876 293 59 54 chr3 71142307 71142679 -88457104 - RMER5 LTR ERV1 -160 374 1 2 1127 858 181 17 6 chr3 71143977 71144149 -88455634 - Lx4A LINE L1 -2 7056 6883 2 1127 39 50 0 0 chr3 71144454 71144514 -88455269 + AT_rich Low_complexity Low_complexity 1 60 0 2 1127 721 298 6 0 chr3 71146019 71146187 -88453596 + B3 SINE B2 42 210 -6 2 1127 408 125 0 0 chr3 71146621 71146685 -88453098 + (GA)n Simple_repeat Simple_repeat 2 65 0 2 1127 713 156 40 0 chr3 71146680 71146853 -88452930 + GA-rich Low_complexity Low_complexity 1 180 0 2 1127 197 370 52 52 chr3 71147137 71147385 -88452398 - L2 LINE L2 -1652 1767 1520 2 1127 254 194 15 0 chr3 71148162 71148229 -88451554 + (TA)n Simple_repeat Simple_repeat 1 68 0 2 1127 319 184 51 26 chr3 71148320 71148398 -88451385 + RLTR25B LTR ERVK 430 509 -519 2 1127 783 58 10 0 chr3 71148336 71148440 -88451343 + B1_Mm SINE Alu 43 147 0 2 1127 204 40 0 0 chr3 71148682 71148707 -88451076 + (TG)n Simple_repeat Simple_repeat 1 25 0 2 1127 466 350 44 13 chr3 71148718 71148877 -88450906 - B3A SINE B2 -17 181 18 2 1127 3530 266 29 16 chr3 71149200 71150179 -88449604 - Lx5 LINE L1 0 7050 6060 2 1127 3248 150 43 7 chr3 71150179 71150762 -88449021 + Lx6 LINE L1 4901 5504 -373 2 1127 1596 173 14 48 chr3 71151051 71151446 -88448337 + Lx6 LINE L1 5520 5922 -1136 2 1127 741 319 35 7 chr3 71151908 71152198 -88447585 + Lx8 LINE L1 6223 6520 -953 2 1127 1739 180 6 0 chr3 71152513 71152857 -88446926 + L1_Mur3 LINE L1 1509 1854 -4026 2 1127 33 25 0 0 chr3 71154292 71154332 -88445451 + AT_rich Low_complexity Low_complexity 1 40 0 2 1127 260 255 0 0 chr3 71154383 71154434 -88445349 - B3A SINE B2 -62 136 86 2 1127 428 215 35 49 chr3 71154476 71154634 -88445149 - Lx7 LINE L1 -3 7693 7554 2 1127 312 102 0 0 chr3 71154646 71154695 -88445088 + (TAG)n Simple_repeat Simple_repeat 3 51 0 2 1127 631 250 69 0 chr3 71154719 71154863 -88444920 + B3 SINE B2 6 159 -57 2 1127 1286 244 65 50 chr3 71154883 71155332 -88444451 - RMER19B LTR ERVK -261 641 76 2 1127 317 265 76 17 chr3 71155332 71155451 -88444332 + L1MEg LINE L1 1822 1947 -4137 2 1127 1697 308 28 60 chr3 71155714 71155981 -88443802 + Lx6 LINE L1 6064 6338 -1122 2 1127 4791 133 9 39 chr3 71155981 71156847 -88442936 + Lx3A LINE L1 6137 6976 -5 2 1127 1697 308 28 60 chr3 71156847 71157264 -88442519 + Lx6 LINE L1 6339 6726 -734 2 1127 23 33 0 0 chr3 71157286 71157316 -88442467 + AT_rich Low_complexity Low_complexity 1 30 0 2 1127 342 0 0 0 chr3 71158501 71158539 -88441244 + (TG)n Simple_repeat Simple_repeat 1 38 0 2 1127 26 30 0 0 chr3 71158653 71158686 -88441097 + AT_rich Low_complexity Low_complexity 1 33 0 2 1127 1040 95 0 39 chr3 71158745 71158883 -88440900 + B1_Mus1 SINE Alu 1 135 -13 2 1127 271 60 20 20 chr3 71158883 71158934 -88440849 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 2 1127 1040 95 0 39 chr3 71158934 71158948 -88440835 + B1_Mus1 SINE Alu 136 147 -1 2 1127 24 32 0 0 chr3 71159564 71159595 -88440188 + AT_rich Low_complexity Low_complexity 1 31 0 2 1127 25 83 0 0 chr3 71159615 71159675 -88440108 + AT_rich Low_complexity Low_complexity 1 60 0 2 1127 512 347 49 41 chr3 71160072 71160318 -88439465 + B4 SINE B4 9 256 -36 2 1127 1372 243 102 3 chr3 71161281 71161664 -88438119 - MTC LTR MaLR 0 421 1 2 1127 531 0 0 0 chr3 71161789 71161848 -88437935 + (CA)n Simple_repeat Simple_repeat 2 60 0 2 1127 261 0 0 0 chr3 71161848 71161876 -88437907 + (GA)n Simple_repeat Simple_repeat 2 30 0 2 1127 387 164 83 88 chr3 71162512 71162693 -88437090 - Lx7 LINE L1 -149 7547 7368 2 1127 677 263 6 0 chr3 71162688 71162859 -88436924 - Lx7 LINE L1 -642 7054 6883 2 1127 1679 181 23 17 chr3 71162860 71163214 -88436569 - RLTR15 LTR ERVK 0 359 4 2 1127 486 195 0 0 chr3 71163290 71163377 -88436406 + RLTR15 LTR ERVK 268 354 -5 2 1127 887 279 17 17 chr3 71163379 71163620 -88436163 - Lx7 LINE L1 -806 6890 6650 2 1127 246 156 0 0 chr3 71164315 71164360 -88435423 + (TG)n Simple_repeat Simple_repeat 2 46 0 2 1127 362 325 42 8 chr3 71165231 71165349 -88434434 + B1F SINE Alu 19 140 -9 2 1127 180 158 0 0 chr3 71165425 71165463 -88434320 + (TAAA)n Simple_repeat Simple_repeat 2 39 0 2 1127 21 57 0 0 chr3 71165646 71165681 -88434102 + AT_rich Low_complexity Low_complexity 1 35 0 2 1127 232 175 71 20 chr3 71166502 71166601 -88433182 + (TA)n Simple_repeat Simple_repeat 2 105 0 2 1127 588 256 7 42 chr3 71166645 71166788 -88432995 + B1_Mur4 SINE Alu 13 150 0 2 1127 3561 280 66 77 chr3 71167230 71167259 -88432524 + Lx6 LINE L1 5901 5929 -1531 2 1127 876 128 8 0 chr3 71167259 71167392 -88432391 + B1_Mus2 SINE Alu 1 134 -13 2 1127 614 24 37 0 chr3 71167392 71167474 -88432309 + (CAAAA)n Simple_repeat Simple_repeat 1 85 0 2 1127 3561 280 66 77 chr3 71167474 71167925 -88431858 + Lx6 LINE L1 5930 6354 -1106 2 1127 990 73 73 0 chr3 71167925 71168062 -88431721 + B1_Mm SINE Alu 1 147 0 2 1127 3561 280 66 77 chr3 71168062 71168097 -88431686 + Lx6 LINE L1 6355 6355 -1105 2 1127 307 41 41 0 chr3 71168097 71168146 -88431637 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 2 1127 180 0 0 0 chr3 71168147 71168167 -88431616 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 2 1127 3561 275 60 76 chr3 71168167 71169060 -88430723 + Lx6 LINE L1 6355 7548 -148 2 1127 245 303 71 58 chr3 71169434 71169599 -88430184 + L1MA6 LINE L1 5643 5803 -497 2 1127 471 118 0 0 chr3 71169599 71169675 -88430108 + (TG)n Simple_repeat Simple_repeat 1 76 0 2 1127 245 303 71 58 chr3 71169675 71169817 -88429966 + L1MA6 LINE L1 5804 5954 -346 2 1127 263 229 41 20 chr3 71169887 71169985 -88429798 + L1MA6 LINE L1 6167 6266 -34 2 1127 28 0 0 0 chr3 71170238 71170266 -88429517 + AT_rich Low_complexity Low_complexity 1 28 0 2 1127 198 0 0 0 chr3 71170617 71170639 -88429144 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 2 1127 227 327 109 27 chr3 71170643 71170753 -88429030 - ID_B1 SINE B4 -8 216 98 2 1127 3311 59 5 0 chr3 71170970 71171394 -88428389 - L1_Mus2 LINE L1 -535 6031 5606 2 1127 3762 82 0 49 chr3 71171403 71171712 -88428071 + L1_Mus2 LINE L1 6043 6346 -220 2 1127 186 43 0 0 chr3 71171712 71171735 -88428048 + (CA)n Simple_repeat Simple_repeat 2 24 0 2 1127 3762 82 0 49 chr3 71171735 71171976 -88427807 + L1_Mus2 LINE L1 6347 6566 0 2 1128 4904 62 0 2 chr3 71172832 71173460 -88426323 - L1Md_F2 LINE L1 0 6582 5956 2 1128 38949 34 0 7 chr3 71173475 71179102 -88420681 - L1Md_T LINE L1 0 6585 904 2 1128 8805 51 0 1 chr3 71179105 71180362 -88419421 - L1Md_F2 LINE L1 -534 6048 4793 2 1128 329 327 17 81 chr3 71180712 71180885 -88418898 - B4A SINE B4 -130 162 1 2 1128 1064 103 0 20 chr3 71181376 71181515 -88418268 + B1_Mus1 SINE Alu 1 139 -9 2 1128 207 0 0 0 chr3 71181515 71181538 -88418245 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2 1128 921 99 0 15 chr3 71181855 71181988 -88417795 + B1_Mus2 SINE Alu 4 134 -13 3 1128 555 16 0 0 chr3 71181990 71182054 -88417729 + (CAAAA)n Simple_repeat Simple_repeat 2 65 0 3 1128 344 82 0 0 chr3 71182085 71182134 -88417649 + B1_Mus1 SINE Alu 2 50 -98 3 1128 264 266 0 15 chr3 71182086 71182151 -88417632 + ID_B1 SINE B4 84 147 -77 3 1128 29 0 0 0 chr3 71182192 71182221 -88417562 + AT_rich Low_complexity Low_complexity 1 29 0 3 1128 27 49 0 0 chr3 71182497 71182538 -88417245 + AT_rich Low_complexity Low_complexity 1 41 0 3 1128 237 369 0 0 chr3 71182866 71182931 -88416852 - tRNA-Ala-GCY_ tRNA tRNA -9 66 2 3 1128 3345 240 62 7 chr3 71183052 71183978 -88415805 - Lx9 LINE L1 -9 7635 6659 3 1128 24 32 0 0 chr3 71184192 71184223 -88415560 + AT_rich Low_complexity Low_complexity 1 31 0 3 1128 2662 209 21 38 chr3 71184248 71184824 -88414959 + RLTR17 LTR ERVK 1 566 -126 3 1128 250 312 16 99 chr3 71184905 71185026 -88414757 + PB1D7 SINE Alu 9 119 -1 3 1128 3534 93 21 18 chr3 71185330 71185842 -88413941 - L1Md_F2 LINE L1 -13 6569 6056 3 1128 4726 235 64 16 chr3 71186112 71186426 -88413357 + Lx5 LINE L1 5674 5980 -1070 3 1128 699 12 0 0 chr3 71186426 71186506 -88413277 + (GGAGA)n Simple_repeat Simple_repeat 4 83 0 3 1128 4726 232 65 15 chr3 71186506 71187346 -88412437 + Lx5 LINE L1 5981 6861 -189 3 1128 7386 171 49 1 chr3 71187346 71187807 -88411976 + Lx5 LINE L1 4167 4629 -1248 3 1128 261 0 0 0 chr3 71187807 71187836 -88411947 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 3 1128 7386 171 47 2 chr3 71187836 71188784 -88410999 + Lx5 LINE L1 4630 5648 -1402 3 1128 933 296 12 14 chr3 71188861 71189168 -88410615 + Lx6 LINE L1 6556 6857 -839 3 1128 1282 264 76 27 chr3 71189189 71189597 -88410186 + Lx6 LINE L1 6947 7374 -86 3 1128 22 0 0 0 chr3 71190227 71190249 -88409534 + AT_rich Low_complexity Low_complexity 1 22 0 3 1128 320 0 0 24 chr3 71190827 71190868 -88408915 + (TTTTA)n Simple_repeat Simple_repeat 2 41 0 3 1128 1032 94 0 0 chr3 71190868 71191006 -88408777 - B1_Mm SINE Alu -9 138 1 3 1128 23 54 0 0 chr3 71191463 71191500 -88408283 + AT_rich Low_complexity Low_complexity 1 37 0 3 1128 21 0 0 0 chr3 71192553 71192574 -88407209 + AT_rich Low_complexity Low_complexity 1 21 0 3 1128 1688 63 0 0 chr3 71192962 71193184 -88406599 + L1_Mus2 LINE L1 6345 6566 0 3 1128 1092 75 0 0 chr3 71193228 71193362 -88406421 + B1_Mus2 SINE Alu 3 136 -11 3 1128 668 74 0 9 chr3 71193364 71193473 -88406310 + (CAAAC)n Simple_repeat Simple_repeat 2 109 0 3 1128 40300 18 1 0 chr3 71193704 71199939 -88399844 - L1Md_A LINE L1 -1 6581 380 3 1128 3434 258 50 38 chr3 71200458 71201571 -88398212 + L1_Mur3 LINE L1 2441 3564 -2316 3 1128 495 0 0 0 chr3 71201571 71201626 -88398157 + (CA)n Simple_repeat Simple_repeat 2 56 0 3 1128 3434 258 50 38 chr3 71201626 71201885 -88397898 + L1_Mur3 LINE L1 3565 3830 -2050 3 1128 6864 108 4 2 chr3 71202091 71202314 -88397469 - L1Md_F2 LINE L1 -12 6570 6350 3 1128 216 0 0 0 chr3 71202314 71202338 -88397445 + (TGGGGG)n Simple_repeat Simple_repeat 2 25 0 3 1128 29517 94 11 95 chr3 71202338 71208720 -88391063 - L1Md_F2 LINE L1 -233 6349 503 3 1128 327 284 11 0 chr3 71208716 71208804 -88390979 - L1Md_F2 LINE L1 -6393 223 135 3 1128 3841 160 18 3 chr3 71208814 71209479 -88390304 - Lx LINE L1 -7 6647 5973 3 1128 418 336 174 50 chr3 71209550 71209791 -88389992 + ORR1D2 LTR MaLR 42 312 -58 3 1128 23 0 0 0 chr3 71209990 71210013 -88389770 + AT_rich Low_complexity Low_complexity 1 23 0 3 1128 287 126 62 10 chr3 71210306 71210402 -88389381 + (TA)n Simple_repeat Simple_repeat 2 102 0 3 1128 277 320 33 17 chr3 71210508 71210689 -88389094 + L1MA4 LINE L1 5997 6180 -120 3 1128 507 276 96 25 chr3 71211755 71211952 -88387831 + B3 SINE B2 1 211 -5 3 1128 5869 58 13 0 chr3 71212481 71213229 -88386554 + L1Md_F3 LINE L1 5827 6584 0 3 1128 228 235 84 105 chr3 71213361 71213456 -88386327 + Charlie11 DNA MER1_type 1781 1873 -323 3 1128 3344 40 2 0 chr3 71213475 71213870 -88385913 + MTA_Mm LTR MaLR 1 396 0 3 1128 5141 19 5 10 chr3 71214292 71214913 -88384870 + L1Md_T LINE L1 4969 5586 -297 3 1128 8993 5 0 0 chr3 71214913 71215909 -88383874 + L1Md_T LINE L1 5587 6582 0 3 1128 2459 141 10 14 chr3 71216225 71216641 -88383142 - RLTR31B_Mm LTR ERVK -143 414 1 3 1128 225 83 0 0 chr3 71216698 71216734 -88383049 + (TTG)n Simple_repeat Simple_repeat 2 37 0 3 1128 24 53 0 0 chr3 71217329 71217367 -88382416 + AT_rich Low_complexity Low_complexity 1 38 0 3 1128 440 297 8 67 chr3 71219285 71219404 -88380379 + RSINE1 SINE B4 42 153 -12 3 1128 249 128 0 0 chr3 71219419 71219466 -88380317 + (CA)n Simple_repeat Simple_repeat 2 48 0 3 1128 432 0 0 0 chr3 71219468 71219516 -88380267 + (GA)n Simple_repeat Simple_repeat 1 48 0 3 1128 288 154 0 0 chr3 71219523 71219575 -88380208 + (CA)n Simple_repeat Simple_repeat 2 53 0 3 1128 711 242 25 80 chr3 71220337 71220575 -88379208 + URR1B DNA MER1_type 1 225 0 3 1128 204 208 0 0 chr3 71220606 71220654 -88379129 + (ATG)n Simple_repeat Simple_repeat 2 49 0 3 1128 208 196 36 0 chr3 71220644 71220700 -88379083 + (TAGA)n Simple_repeat Simple_repeat 2 59 0 3 1128 700 274 82 14 chr3 71220914 71221195 -88378588 - Lx7 LINE L1 -1807 5889 5590 3 1128 7220 136 14 14 chr3 71221206 71222594 -88377189 - L1_Mus3 LINE L1 0 6638 5262 3 1128 915 271 45 29 chr3 71222751 71223062 -88376721 - Lx7 LINE L1 -215 7481 7166 3 1128 251 237 70 85 chr3 71223081 71223161 -88376622 - RLTR15 LTR ERVK -198 161 77 3 1128 4480 150 45 59 chr3 71223161 71224080 -88375703 - RMER17A2 LTR ERVK 0 906 1 3 1128 251 237 70 85 chr3 71224080 71224128 -88375655 - RLTR15 LTR ERVK -283 76 35 3 1128 4060 193 35 48 chr3 71224175 71225123 -88374660 - MYSERV6-int LTR ERVK -17 8942 8008 3 1128 290 162 88 0 chr3 71225171 71225251 -88374532 - L1_Mus3 LINE L1 -1 6637 6551 3 1128 650 240 19 10 chr3 71225255 71225461 -88374322 - MYSERV-int LTR ERVK -1009 5541 5334 3 1128 1978 301 53 39 chr3 71225469 71226456 -88373327 - MYSERV-int LTR ERVK -98 5162 4199 3 1128 633 244 42 33 chr3 71226452 71226664 -88373119 - MYSERV-int LTR ERVK -2509 4041 3828 3 1128 27 29 0 0 chr3 71227060 71227094 -88372689 + AT_rich Low_complexity Low_complexity 1 34 0 3 1128 285 140 0 107 chr3 71227319 71227375 -88372408 - MYSERV6-int LTR ERVK -2606 6353 6304 3 1128 23 78 0 0 chr3 71227608 71227659 -88372124 + AT_rich Low_complexity Low_complexity 1 51 0 3 1128 24 32 0 0 chr3 71227960 71227991 -88371792 + AT_rich Low_complexity Low_complexity 1 31 0 3 1128 338 394 110 17 chr3 71229437 71229729 -88370054 + L3b LINE CR1 153 471 -11 3 1128 262 98 39 0 chr3 71230255 71230306 -88369477 + (CA)n Simple_repeat Simple_repeat 2 54 0 3 1128 435 327 147 4 chr3 71231275 71231533 -88368250 + Lx8 LINE L1 7079 7373 -100 3 1128 184 30 29 29 chr3 71231697 71231731 -88368052 + (TTTTTG)n Simple_repeat Simple_repeat 3 36 0 3 1128 770 306 82 19 chr3 71231800 71232057 -88367726 + ORR1D2 LTR MaLR 43 315 -55 3 1128 33815 5 0 0 chr3 71232066 71236599 -88363184 - L1Md_A LINE L1 0 6582 2050 3 1128 255 271 0 0 chr3 71236599 71236658 -88363125 + ORR1D2 LTR MaLR 348 406 -13 3 1128 544 332 105 45 chr3 71236754 71237136 -88362647 + L1M2 LINE L1 3814 4218 -1925 3 1128 23 33 0 0 chr3 71237171 71237201 -88362582 + AT_rich Low_complexity Low_complexity 1 30 0 3 1128 6225 80 25 0 chr3 71237447 71238288 -88361495 - L1_Mus2 LINE L1 -2 6564 5703 3 1128 1086 280 92 38 chr3 71238305 71238673 -88361110 + MTB_Mm LTR MaLR 10 397 -10 3 1128 364 330 86 24 chr3 71238684 71239057 -88360726 + L1M2 LINE L1 4649 5044 -1099 3 1128 25 65 0 0 chr3 71239187 71239233 -88360550 + AT_rich Low_complexity Low_complexity 1 46 0 3 1128 23 0 0 0 chr3 71239284 71239307 -88360476 + AT_rich Low_complexity Low_complexity 1 23 0 3 1128 261 0 0 0 chr3 71239996 71240025 -88359758 + (A)n Simple_repeat Simple_repeat 1 29 0 3 1128 25 51 0 0 chr3 71240513 71240552 -88359231 + AT_rich Low_complexity Low_complexity 1 39 0 3 1128 19463 16 2 94 chr3 71241333 71244975 -88354808 + L1Md_A LINE L1 416 3716 -2167 3 1128 212 171 0 0 chr3 71244980 71245021 -88354762 + A-rich Low_complexity Low_complexity 1 41 0 3 1128 40582 13 2 6 chr3 71245357 71251731 -88348052 - L1Md_A LINE L1 0 6582 234 3 1128 338 61 20 0 chr3 71251819 71251868 -88347915 + (TTTA)n Simple_repeat Simple_repeat 1 50 0 3 1128 355 259 169 7 chr3 71251869 71252005 -88347778 - Lx5 LINE L1 -1 7049 6892 3 1128 5699 198 36 26 chr3 71252004 71253211 -88346572 + Lx5 LINE L1 5673 6890 -160 3 1128 513 335 61 107 chr3 71253465 71253856 -88345927 + MTEa LTR MaLR 1 373 -6 3 1128 263 319 55 117 chr3 71254159 71254287 -88345496 - RSINE1 SINE B4 -43 122 3 3 1128 532 258 31 66 chr3 71255093 71255350 -88344433 + Lx9 LINE L1 7366 7613 -31 3 1128 1122 82 0 0 chr3 71255596 71255743 -88344040 - B1_Mus2 SINE Alu 0 147 1 3 1128 243 0 0 0 chr3 71256235 71256262 -88343521 + (T)n Simple_repeat Simple_repeat 1 27 0 3 1128 284 0 28 0 chr3 71256462 71256498 -88343285 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 3 1128 32 43 0 0 chr3 71256665 71256711 -88343072 + AT_rich Low_complexity Low_complexity 1 46 0 3 1128 281 186 45 68 chr3 71256820 71256953 -88342830 - L1_Mus3 LINE L1 -1 6637 6508 3 1128 7140 81 2 3 chr3 71256965 71257919 -88341864 - L1_Mus2 LINE L1 0 6566 5614 3 1128 3583 260 45 19 chr3 71257919 71259412 -88340371 + Lx7 LINE L1 4755 6306 -1390 3 1128 27710 72 3 3 chr3 71259409 71261516 -88338267 + L1Md_F2 LINE L1 2168 4280 -1603 3 1128 3222 35 40 0 chr3 71261516 71261911 -88337872 + L1Md_T LINE L1 6171 6581 -1 3 1128 27710 59 4 2 chr3 71261911 71264191 -88335592 + L1Md_F2 LINE L1 4281 6561 -21 3 1128 318 26 0 0 chr3 71264191 71264230 -88335553 + (TA)n Simple_repeat Simple_repeat 1 39 0 3 1128 23 33 0 0 chr3 71264374 71264404 -88335379 + AT_rich Low_complexity Low_complexity 1 30 0 3 1128 759 319 0 0 chr3 71264415 71264641 -88335142 + Lx7 LINE L1 6298 6523 -1173 3 1128 407 250 0 18 chr3 71265585 71265695 -88334088 + Lx7 LINE L1 5718 5825 -1871 3 1128 296 83 21 0 chr3 71265901 71265949 -88333834 + (CA)n Simple_repeat Simple_repeat 2 50 0 3 1128 301 365 108 23 chr3 71265958 71266216 -88333567 - MLT1A0 LTR MaLR -71 294 15 3 1128 490 54 13 13 chr3 71266293 71266368 -88333415 + (TAA)n Simple_repeat Simple_repeat 2 76 0 3 1128 876 248 31 140 chr3 71266659 71266810 -88332973 + ORR1C1 LTR MaLR 3 134 -244 3 1128 1022 76 7 65 chr3 71266810 71266965 -88332818 - B1_Mus1 SINE Alu 0 148 3 3 1128 876 248 31 140 chr3 71266965 71267235 -88332548 + ORR1C1 LTR MaLR 135 378 0 3 1128 509 288 32 52 chr3 71268635 71268789 -88330994 + B3A SINE B2 7 157 -41 4 1128 26 50 0 0 chr3 71268808 71268848 -88330935 + AT_rich Low_complexity Low_complexity 1 40 0 4 1128 745 278 24 0 chr3 71269205 71269410 -88330373 + B3 SINE B2 1 210 -6 4 1128 245 237 0 0 chr3 71269853 71269912 -88329871 + CT-rich Low_complexity Low_complexity 2 60 0 4 1128 366 200 0 11 chr3 71270009 71270100 -88329683 - Lx3_Mus LINE L1 0 7009 6920 4 1128 2620 96 16 3 chr3 71270103 71270491 -88329292 - L1_Mus4 LINE L1 -2 6634 6242 4 1128 282 29 0 0 chr3 71270516 71270551 -88329232 + (TCTG)n Simple_repeat Simple_repeat 2 36 0 4 1128 1593 104 12 4 chr3 71270613 71270854 -88328929 - L1_Mus1 LINE L1 -3 6564 6322 4 1128 933 73 0 0 chr3 71270856 71270979 -88328804 + L1_Mus1 LINE L1 6198 6320 -247 4 1128 590 39 0 13 chr3 71271021 71271099 -88328684 + (TA)n Simple_repeat Simple_repeat 2 78 0 4 1128 231 36 0 0 chr3 71271191 71271219 -88328564 + (CA)n Simple_repeat Simple_repeat 1 28 0 4 1128 27 29 0 0 chr3 71271358 71271392 -88328391 + AT_rich Low_complexity Low_complexity 1 34 0 4 1128 24 0 0 0 chr3 71271444 71271468 -88328315 + AT_rich Low_complexity Low_complexity 1 24 0 4 1128 24 53 0 0 chr3 71272693 71272731 -88327052 + AT_rich Low_complexity Low_complexity 1 38 0 4 1128 1812 318 107 35 chr3 71273363 71274832 -88324951 + Lx8 LINE L1 5661 7236 -237 4 1128 1765 198 41 3 chr3 71274838 71275178 -88324605 - ORR1B2 LTR MaLR -14 353 1 4 1128 422 287 26 83 chr3 71275600 71275616 -88324167 - RSINE1 SINE B4 -9 156 142 4 1128 201 39 0 0 chr3 71275616 71275642 -88324141 + (CA)n Simple_repeat Simple_repeat 2 27 0 4 1128 422 287 26 83 chr3 71275642 71275781 -88324002 - RSINE1 SINE B4 -24 141 10 4 1128 483 129 20 10 chr3 71276413 71276515 -88323268 + L1_Mus3 LINE L1 6524 6626 -12 4 1128 399 41 0 0 chr3 71276532 71276581 -88323202 + (GAAAA)n Simple_repeat Simple_repeat 2 50 0 4 1128 307 260 136 26 chr3 71276729 71276883 -88322900 + RMER5 LTR ERV1 298 468 -66 4 1128 804 50 0 0 chr3 71276996 71277097 -88322686 + (GA)n Simple_repeat Simple_repeat 2 102 0 4 1128 391 358 20 13 chr3 71277382 71277535 -88322248 + RSINE1 SINE B4 3 156 -9 4 1128 300 172 0 0 chr3 71277535 71277593 -88322190 + (TG)n Simple_repeat Simple_repeat 2 59 0 4 1128 723 189 65 170 chr3 71279380 71279674 -88320109 - Lx4A LINE L1 0 7058 6796 4 1128 772 154 112 0 chr3 71279684 71279827 -88319956 - Lx4A LINE L1 -625 6433 6275 4 1128 245 318 83 0 chr3 71280154 71280286 -88319497 - MER2 DNA MER2_type -116 229 87 4 1128 1129 82 0 0 chr3 71280655 71280802 -88318981 + B1_Mus1 SINE Alu 1 147 -1 4 1128 243 0 0 0 chr3 71281102 71281129 -88318654 + (TA)n Simple_repeat Simple_repeat 1 27 0 4 1128 426 348 35 28 chr3 71281535 71281960 -88317823 - ERVL-B4-int LTR ERVL -4902 765 338 4 1128 35 54 0 0 chr3 71282004 71282060 -88317723 + AT_rich Low_complexity Low_complexity 1 56 0 4 1128 6573 31 0 0 chr3 71282279 71283053 -88316730 - L1Md_T LINE L1 0 6582 5809 4 1128 288 0 0 0 chr3 71284158 71284190 -88315593 + (ATG)n Simple_repeat Simple_repeat 3 34 0 4 1128 1486 224 15 77 chr3 71284783 71285184 -88314599 + ORR1C1 LTR MaLR 1 376 -2 4 1128 1987 199 60 5 chr3 71285357 71285756 -88314027 - Lx5 LINE L1 -270 6780 6360 4 1128 429 250 56 8 chr3 71285751 71285876 -88313907 + Lx5 LINE L1 6917 7047 -3 4 1128 22 35 0 0 chr3 71285961 71285990 -88313793 + AT_rich Low_complexity Low_complexity 1 29 0 4 1128 529 270 222 16 chr3 71286449 71286777 -88313006 - MTD LTR MaLR 0 379 20 4 1128 2288 250 123 48 chr3 71287349 71288770 -88311013 + RMER1B Other Other 1 1062 -4 4 1128 4265 119 76 9 chr3 71289580 71290274 -88309509 - Lx3_Mus LINE L1 0 7009 6269 4 1128 565 274 120 5 chr3 71290567 71290758 -88309025 - B3 SINE B2 0 216 4 4 1128 225 0 0 0 chr3 71290780 71290805 -88308978 + (A)n Simple_repeat Simple_repeat 1 25 0 4 1128 22 35 0 0 chr3 71291800 71291829 -88307954 + AT_rich Low_complexity Low_complexity 1 29 0 4 1128 2927 91 13 0 chr3 71291833 71292231 -88307552 - L1_Mus1 LINE L1 -1 6566 6164 4 1128 1457 243 98 24 chr3 71292239 71292743 -88307040 + ORR1A4-int LTR MaLR 1001 1963 0 4 1128 249 186 32 63 chr3 71292748 71292811 -88306972 + ORR1A4 LTR MaLR 6 66 -263 4 1128 219 88 0 0 chr3 71292917 71292951 -88306832 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 4 1128 1245 266 39 17 chr3 71293025 71293381 -88306402 + ORR1D1 LTR MaLR 8 371 -3 4 1128 25 0 0 0 chr3 71293851 71293876 -88305907 + AT_rich Low_complexity Low_complexity 1 25 0 4 1128 8485 126 19 18 chr3 71294413 71296683 -88303100 + Lx3A LINE L1 4706 6969 -12 4 1128 351 0 0 0 chr3 71296683 71296722 -88303061 + (CATA)n Simple_repeat Simple_repeat 2 40 0 4 1128 261 0 0 0 chr3 71296776 71296805 -88302978 + (TG)n Simple_repeat Simple_repeat 2 30 0 4 1128 446 329 43 7 chr3 71296927 71297065 -88302718 - MTD LTR MaLR -108 311 169 4 1128 35 63 0 0 chr3 71297245 71297308 -88302475 + AT_rich Low_complexity Low_complexity 1 63 0 4 1128 312 55 55 0 chr3 71298614 71298669 -88301114 + (TA)n Simple_repeat Simple_repeat 2 59 0 4 1128 628 258 60 74 chr3 71298796 71299081 -88300702 - Lx7 LINE L1 -61 7635 7355 4 1128 528 30 0 0 chr3 71299085 71299151 -88300632 + (TAGA)n Simple_repeat Simple_repeat 1 66 0 4 1128 603 136 51 25 chr3 71299220 71299378 -88300405 + GA-rich Low_complexity Low_complexity 4 165 0 4 1128 342 312 115 7 chr3 71299378 71299422 -88300361 + HAL1-3A_ME LINE L1 2287 2336 -522 4 1128 1398 11 0 27 chr3 71299422 71299605 -88300178 + (GGGAA)n Simple_repeat Simple_repeat 1 178 0 4 1128 342 312 115 7 chr3 71299605 71299699 -88300084 + HAL1-3A_ME LINE L1 2337 2440 -418 4 1128 261 0 0 0 chr3 71299748 71299777 -88300006 + (CAGGA)n Simple_repeat Simple_repeat 2 30 0 4 1128 1193 269 115 7 chr3 71299779 71300337 -88299446 - Lx7 LINE L1 -345 7351 6734 4 1128 307 340 70 27 chr3 71300360 71300817 -88298966 - L1_Rod LINE L1 -607 5549 5016 4 1128 6046 102 78 16 chr3 71300821 71301296 -88298487 + L1_Mus3 LINE L1 5628 6167 -471 4 1128 2510 128 28 5 chr3 71301296 71301690 -88298093 + RLTR9D LTR ERVK 1 403 0 4 1128 6046 102 78 16 chr3 71301690 71302166 -88297617 + L1_Mus3 LINE L1 6168 6638 0 4 1128 423 288 116 28 chr3 71302165 71302554 -88297229 - L1_Rod LINE L1 -817 5030 4608 4 17 31394 99 6 8 chr3 71302595 71303925 -88295858 - L1Md_F2 LINE L1 -15 6567 5244 4 1129 477 0 0 0 chr3 71303925 71303978 -88295805 + (TA)n Simple_repeat Simple_repeat 2 54 0 4 1129 31394 99 11 11 chr3 71303978 71306199 -88293584 - L1Md_F2 LINE L1 -640 5243 3007 4 1129 399 41 0 0 chr3 71306199 71306248 -88293535 + (TTTA)n Simple_repeat Simple_repeat 3 51 0 4 1129 31394 105 19 15 chr3 71306248 71308681 -88291102 - L1Md_F2 LINE L1 -2877 3006 578 4 1129 318 239 105 85 chr3 71308690 71309033 -88290750 - L1_Mm LINE L1 -1497 4646 4286 4 1129 296 288 0 0 chr3 71309161 71309227 -88290556 - B2_Mm2 SINE B2 -119 76 11 4 1129 326 150 0 24 chr3 71309229 71309303 -88290480 + Lx3A LINE L1 6899 6972 -9 4 1129 216 0 0 0 chr3 71309303 71309327 -88290456 + (TTAA)n Simple_repeat Simple_repeat 3 26 0 4 1129 21 36 0 0 chr3 71309389 71309417 -88290366 + AT_rich Low_complexity Low_complexity 1 28 0 4 1129 1102 124 104 0 chr3 71309583 71309658 -88290125 + Lx LINE L1 6442 6516 -138 4 1129 210 71 0 0 chr3 71309658 71309686 -88290097 + (TGGG)n Simple_repeat Simple_repeat 1 28 0 4 1129 1102 124 104 0 chr3 71309686 71309803 -88289980 + Lx LINE L1 6517 6653 -1 4 1129 29 60 0 0 chr3 71310640 71310690 -88289093 + AT_rich Low_complexity Low_complexity 1 50 0 4 1129 5808 75 8 5 chr3 71311016 71311796 -88287987 + L1_Mus2 LINE L1 5785 6566 0 4 1129 182 372 0 87 chr3 71312342 71312445 -88287338 - L2c LINE L2 -1 3386 3293 4 1129 254 305 89 70 chr3 71312846 71313103 -88286680 + MTEb LTR MaLR 118 379 0 4 1129 265 330 121 73 chr3 71313328 71313642 -88286141 - MLT1B LTR MaLR -35 355 27 4 1129 619 54 0 21 chr3 71314137 71314231 -88285552 + (TA)n Simple_repeat Simple_repeat 2 93 0 4 1129 727 255 30 40 chr3 71314351 71314678 -88285105 - Lx2B LINE L1 -20 7038 6614 4 1129 1486 287 52 2 chr3 71314735 71315158 -88284625 - Lx9 LINE L1 -865 6779 6336 4 1129 1364 179 101 63 chr3 71315215 71315532 -88284251 + ORR1A4 LTR MaLR 1 329 0 4 1129 838 400 60 23 chr3 71318350 71318829 -88280954 + MTE-int LTR MaLR 777 1273 -307 4 1129 343 331 21 0 chr3 71318813 71318955 -88280828 + MTE-int LTR MaLR 1409 1553 -27 4 1129 2359 109 21 67 chr3 71319176 71319607 -88280176 + RLTR9F LTR ERVK 1 411 -4 4 1129 321 314 68 68 chr3 71319609 71319756 -88280027 + MTEa LTR MaLR 228 374 -5 4 1129 22 80 0 0 chr3 71320227 71320277 -88279506 + AT_rich Low_complexity Low_complexity 1 50 0 4 1129 245 120 40 0 chr3 71320296 71320346 -88279437 + (CATATA)n Simple_repeat Simple_repeat 3 54 0 4 1129 229 196 54 0 chr3 71320354 71320410 -88279373 + (TAGA)n Simple_repeat Simple_repeat 4 62 0 4 1129 23 33 0 0 chr3 71321476 71321506 -88278277 + AT_rich Low_complexity Low_complexity 1 30 0 4 1129 6280 132 31 16 chr3 71321949 71321961 -88277822 - Lx LINE L1 -1 6653 6642 4 1129 6681 136 22 24 chr3 71321961 71322427 -88277356 - Lx3A LINE L1 -3 6978 6502 4 1129 306 0 0 0 chr3 71322427 71322461 -88277322 + (TTTG)n Simple_repeat Simple_repeat 3 36 0 4 1129 6681 136 22 24 chr3 71322461 71323149 -88276634 - Lx3A LINE L1 -480 6501 5827 4 1129 6280 148 28 12 chr3 71323149 71324668 -88275115 - Lx LINE L1 -13 6641 5106 4 1129 7344 88 6 1 chr3 71324713 71325956 -88273827 - L1_Mus1 LINE L1 -1 6566 5318 4 1129 22 35 0 0 chr3 71326104 71326133 -88273650 + AT_rich Low_complexity Low_complexity 1 29 0 4 1129 260 278 44 0 chr3 71326449 71326539 -88273244 - L1M2 LINE L1 -521 5653 5560 4 1129 21 36 0 0 chr3 71326684 71326712 -88273071 + AT_rich Low_complexity Low_complexity 1 28 0 4 1129 315 301 85 36 chr3 71326744 71327051 -88272732 - L1M2 LINE L1 -839 5301 4980 4 1129 662 91 0 10 chr3 71327233 71327333 -88272450 + (GAA)n Simple_repeat Simple_repeat 1 99 0 4 1129 1436 190 5 95 chr3 71327549 71327870 -88271913 + L1_Mur2 LINE L1 2877 3179 -2698 4 1129 953 155 0 0 chr3 71327870 71328012 -88271771 + B1_Mus1 SINE Alu 2 143 -5 4 1129 1436 190 5 95 chr3 71328012 71328120 -88271663 + L1_Mur2 LINE L1 3180 3267 -2610 4 1129 735 101 5 16 chr3 71328093 71328235 -88271548 + L1Md_F2 LINE L1 5940 6077 -505 4 1129 3502 198 26 3 chr3 71328237 71328958 -88270825 + L1Md_F2 LINE L1 242 979 -5745 4 1129 11482 7 1 1 chr3 71328957 71330968 -88268815 + L1Md_A LINE L1 26 2036 -3847 4 1129 14812 8 0 0 chr3 71331998 71333670 -88266113 + L1Md_A LINE L1 3915 5586 -297 4 1129 8880 8 0 0 chr3 71333670 71334665 -88265118 + L1Md_A LINE L1 5587 6581 -1 5 1129 33495 60 2 36 chr3 71334666 71335712 -88264071 + L1Md_F2 LINE L1 965 1969 -3914 4 1129 240 59 0 0 chr3 71335712 71335746 -88264037 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 5 1129 33495 54 3 13 chr3 71335746 71337089 -88262694 + L1Md_F2 LINE L1 1970 3324 -2559 4 1129 3893 55 15 0 chr3 71337089 71337564 -88262219 - LTRIS_Mm LTR ERV1 0 482 1 5 1129 33495 54 3 13 chr3 71337564 71339881 -88259902 + L1Md_F2 LINE L1 3325 5585 -298 4 1129 7788 59 1 2 chr3 71339882 71340873 -88258910 + L1Md_F2 LINE L1 5588 6577 -5 4 1129 22 35 0 0 chr3 71341208 71341237 -88258546 + AT_rich Low_complexity Low_complexity 1 29 0 5 1129 31642 92 9 1 chr3 71341884 71346361 -88253422 - L1Md_F2 LINE L1 -2 6580 2072 5 1129 213 39 0 0 chr3 71346361 71346387 -88253396 + (TTG)n Simple_repeat Simple_repeat 2 27 0 5 1129 31642 92 10 0 chr3 71346387 71346475 -88253308 - L1Md_F2 LINE L1 -3812 2071 1972 5 1129 348 43 0 0 chr3 71346475 71346521 -88253262 + (TTTG)n Simple_repeat Simple_repeat 2 47 0 5 1129 31642 92 10 0 chr3 71346521 71347148 -88252635 - L1Md_F2 LINE L1 -3912 1971 1345 5 1129 411 73 0 0 chr3 71347519 71347574 -88252209 + (TA)n Simple_repeat Simple_repeat 1 55 0 5 1129 25 75 0 0 chr3 71348304 71348357 -88251426 + AT_rich Low_complexity Low_complexity 1 53 0 5 1129 2827 46 0 8 chr3 71348834 71349185 -88250598 + L1Md_F3 LINE L1 6220 6567 -17 5 1129 24 53 0 0 chr3 71349427 71349465 -88250318 + AT_rich Low_complexity Low_complexity 1 38 0 5 1129 5069 57 1 6 chr3 71350316 71350968 -88248815 + L1_Mus1 LINE L1 5919 6567 0 5 1129 1191 216 160 35 chr3 71350995 71351422 -88248361 + Lx7 LINE L1 3510 4117 -1763 5 1129 495 250 59 22 chr3 71351422 71351557 -88248226 - RMER6C LTR ERVK -550 140 1 5 1129 3679 262 50 40 chr3 71351573 71352168 -88247615 + Lx7 LINE L1 5587 6220 -1476 5 1129 3059 110 4 17 chr3 71352168 71352629 -88247154 + Lx LINE L1 6194 6648 -6 5 1129 3679 262 50 40 chr3 71352629 71352968 -88246815 + Lx7 LINE L1 6221 6533 -1163 5 1129 2703 218 37 58 chr3 71352968 71353699 -88246084 - RMER6D LTR ERVK -4 716 1 5 1129 3679 262 50 40 chr3 71353699 71353948 -88245835 + Lx7 LINE L1 6534 6782 -914 5 1129 24 53 0 0 chr3 71354404 71354442 -88245341 + AT_rich Low_complexity Low_complexity 1 38 0 5 1129 510 221 0 0 chr3 71354498 71354629 -88245154 + CT-rich Low_complexity Low_complexity 3 133 0 5 1129 285 29 0 0 chr3 71354629 71354663 -88245120 + (CAT)n Simple_repeat Simple_repeat 3 36 0 5 1129 768 299 13 63 chr3 71355126 71355504 -88244279 + RMER1B Other Other 696 1054 -12 5 1129 231 250 0 29 chr3 71355504 71355574 -88244209 + A-rich Low_complexity Low_complexity 2 69 0 5 1129 1684 52 164 0 chr3 71355574 71355806 -88243977 - Lx3B LINE L1 -1076 5897 5628 5 1129 205 29 0 56 chr3 71355830 71355866 -88243917 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 5 1129 2154 157 22 12 chr3 71355871 71356262 -88243521 + Lx3A LINE L1 5908 6302 -671 5 1129 6011 63 4 7 chr3 71356262 71357032 -88242751 + L1Md_F2 LINE L1 5814 6581 -1 5 1129 195 42 0 0 chr3 71357064 71357088 -88242695 + (A)n Simple_repeat Simple_repeat 1 24 0 5 1129 4070 122 15 15 chr3 71357088 71357768 -88242015 + Lx3A LINE L1 6296 6975 -6 5 1129 334 298 9 19 chr3 71357839 71357945 -88241838 + CT-rich Low_complexity Low_complexity 3 107 0 5 1129 29 28 0 0 chr3 71360021 71360057 -88239726 + AT_rich Low_complexity Low_complexity 1 36 0 5 1129 261 135 0 0 chr3 71360820 71360872 -88238911 + (GA)n Simple_repeat Simple_repeat 1 52 0 5 1129 387 350 104 54 chr3 71360891 71361032 -88238751 - B4A SINE B4 -19 273 113 5 1129 2895 98 2 2 chr3 71361032 71361432 -88238351 - MTB LTR MaLR 0 400 1 5 1129 387 350 104 54 chr3 71361432 71361550 -88238233 - B4A SINE B4 -180 112 1 5 1129 1552 324 122 54 chr3 71361710 71361949 -88237834 - RMER1C Other Other -8 1334 1045 5 1129 4462 88 11 3 chr3 71361949 71362568 -88237215 - L1_Mus3 LINE L1 -4 6634 6011 5 1129 1552 330 110 51 chr3 71362568 71363319 -88236464 - RMER1C Other Other -298 1044 376 5 1129 28 29 0 0 chr3 71364910 71364945 -88234838 + AT_rich Low_complexity Low_complexity 1 35 0 5 1129 30 27 0 0 chr3 71365017 71365054 -88234729 + AT_rich Low_complexity Low_complexity 1 37 0 5 1129 519 154 163 0 chr3 71365525 71365648 -88234135 + Lx9 LINE L1 7342 7484 -160 5 1129 35 0 0 0 chr3 71365648 71365683 -88234100 + AT_rich Low_complexity Low_complexity 1 35 0 5 1129 1928 269 26 4 chr3 71365683 71366139 -88233644 + Lx6 LINE L1 6988 7453 -7 5 1129 24 0 0 0 chr3 71366871 71366895 -88232888 + AT_rich Low_complexity Low_complexity 1 24 0 5 1129 946 126 0 7 chr3 71367401 71367545 -88232238 - RMER6B LTR ERVK 0 461 319 5 1129 261 0 0 0 chr3 71367545 71367574 -88232209 + (CAAAAA)n Simple_repeat Simple_repeat 1 29 0 5 1129 1427 174 15 8 chr3 71367581 71367848 -88231935 - RMER6B LTR ERVK -135 326 58 5 1129 985 279 20 38 chr3 71368338 71368785 -88230998 + L1_Mur3 LINE L1 842 1280 -6432 5 1129 375 380 52 87 chr3 71368986 71369274 -88230509 + B4 SINE B4 1 278 -14 5 1129 188 67 0 32 chr3 71369315 71369346 -88230437 + (CATATA)n Simple_repeat Simple_repeat 4 33 0 5 1129 284 273 11 11 chr3 71369366 71369455 -88230328 + GA-rich Low_complexity Low_complexity 2 90 0 5 1129 366 40 0 0 chr3 71369968 71370023 -88229760 + L1_Mus1 LINE L1 6516 6565 -2 5 1129 2074 200 29 32 chr3 71371512 71372039 -88227744 - RLTR11A LTR ERVK -3 525 1 5 1129 775 189 0 22 chr3 71372330 71372465 -88227318 + B1_Mur3 SINE Alu 1 132 -17 5 1129 22 0 0 0 chr3 71373064 71373086 -88226697 + AT_rich Low_complexity Low_complexity 1 22 0 5 1129 421 292 8 8 chr3 71373276 71373407 -88226376 - Lx8 LINE L1 -373 7100 6970 5 1129 204 67 0 0 chr3 71373510 71373540 -88226243 + (TG)n Simple_repeat Simple_repeat 1 30 0 5 1129 281 327 47 19 chr3 71373542 71373648 -88226135 - RSINE1 SINE B4 -44 121 13 5 1129 1284 89 0 0 chr3 71374490 71374670 -88225113 + (TTCTC)n Simple_repeat Simple_repeat 1 180 0 5 1129 214 119 23 23 chr3 71374670 71374706 -88225077 + CT-rich Low_complexity Low_complexity 2 38 0 5 1129 219 146 0 0 chr3 71374707 71374748 -88225035 + (TATATG)n Simple_repeat Simple_repeat 4 44 0 5 1129 7819 51 2 10 chr3 71374835 71375824 -88223959 + L1Md_F2 LINE L1 5602 6582 0 5 1129 216 204 0 0 chr3 71375837 71375881 -88223902 + A-rich Low_complexity Low_complexity 1 44 0 5 1129 662 97 0 89 chr3 71376257 71376381 -88223402 - L1_Mus2 LINE L1 -2 6564 6452 5 1129 2285 261 77 7 chr3 71377131 71377813 -88221970 - Lx2B LINE L1 -144 6856 6046 5 1129 1653 33 14 19 chr3 71377815 71378031 -88221752 - L1Md_F3 LINE L1 -1 6583 6369 5 1129 1807 288 94 81 chr3 71379290 71379545 -88220238 + Lx6 LINE L1 6529 6753 -707 5 1129 1079 58 0 0 chr3 71379545 71379682 -88220101 + B1_Mus2 SINE Alu 1 137 -10 5 1129 230 0 33 0 chr3 71379682 71379712 -88220071 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 5 1129 1807 288 94 81 chr3 71379712 71380349 -88219434 + Lx6 LINE L1 6754 7433 -27 5 1129 257 327 73 50 chr3 71381192 71381411 -88218372 + MERVK26-int LTR ERVK 65 288 -6631 5 1129 195 115 57 19 chr3 71381411 71381464 -88218319 + A-rich Low_complexity Low_complexity 6 60 0 5 1129 5455 82 0 7 chr3 71381556 71382293 -88217490 - L1Md_F2 LINE L1 -11 6571 5840 5 1129 3343 323 33 25 chr3 71383188 71384572 -88215211 + MERVK26-int LTR ERVK 1539 2934 -3985 5 1129 201 196 0 0 chr3 71384573 71384619 -88215164 + GA-rich Low_complexity Low_complexity 3 48 0 5 1129 268 255 185 19 chr3 71384795 71384903 -88214880 + RMER13A LTR ERVK 340 465 -395 5 1129 311 382 51 43 chr3 71384963 71385198 -88214585 + RMER13A LTR ERVK 585 821 -39 5 1129 857 242 5 26 chr3 71385225 71385420 -88214363 + MERVK26-int LTR ERVK 6413 6603 -316 5 1129 293 262 46 18 chr3 71385322 71385431 -88214352 + RodERV21-int LTR ERV1 4430 4541 -450 5 1129 395 52 17 0 chr3 71385695 71385753 -88214030 + (CAAAAA)n Simple_repeat Simple_repeat 2 60 0 5 1129 936 124 0 0 chr3 71386099 71386326 -88213457 + (CA)n Simple_repeat Simple_repeat 1 227 0 5 1129 319 203 0 0 chr3 71386691 71386750 -88213033 + Lx7 LINE L1 7210 7268 -428 5 1129 3078 71 2 10 chr3 71386754 71387164 -88212619 + L1Md_F2 LINE L1 6164 6570 -12 5 1129 1021 116 0 0 chr3 71387183 71387330 -88212453 + B1_Mus2 SINE Alu 1 147 0 5 1129 185 24 45 45 chr3 71387426 71387470 -88212313 + (TTTTA)n Simple_repeat Simple_repeat 4 47 0 5 1129 1127 234 26 67 chr3 71387506 71387849 -88211934 + Lx7 LINE L1 7367 7695 -1 5 1129 22 56 0 0 chr3 71387866 71387902 -88211881 + AT_rich Low_complexity Low_complexity 1 36 0 5 1129 264 267 0 0 chr3 71388022 71388111 -88211672 + (TG)n Simple_repeat Simple_repeat 1 89 0 5 1129 542 220 50 28 chr3 71388304 71388486 -88211297 - Lx7 LINE L1 0 7696 7511 5 1129 7330 54 6 0 chr3 71388502 71389525 -88210258 + L1Md_F3 LINE L1 4942 5973 -609 5 1129 15181 9 0 1 chr3 71389522 71391273 -88208510 + L1_Mm LINE L1 2198 3947 -1936 5 1129 4867 50 8 3 chr3 71391273 71391889 -88207894 + L1Md_F3 LINE L1 5966 6584 0 5 1129 1352 261 125 20 chr3 71391890 71392394 -88207389 - Lx7 LINE L1 -159 7537 6981 5 1129 344 326 46 46 chr3 71392660 71392838 -88206945 + Lx7 LINE L1 7127 7306 -390 5 1129 459 0 0 0 chr3 71392838 71392889 -88206894 + (CA)n Simple_repeat Simple_repeat 2 52 0 5 1129 344 326 46 46 chr3 71392889 71392906 -88206877 + Lx7 LINE L1 7307 7322 -374 5 1129 183 42 0 0 chr3 71392971 71392995 -88206788 + (TTTTG)n Simple_repeat Simple_repeat 1 24 0 5 1129 190 182 30 0 chr3 71393523 71393589 -88206194 + (TA)n Simple_repeat Simple_repeat 2 69 0 5 1129 304 268 19 143 chr3 71393833 71393994 -88205789 - B1_Mur1 SINE Alu -7 142 2 5 1129 1622 202 23 6 chr3 71396202 71396555 -88203228 - RLTR15 LTR ERVK 0 359 1 5 1129 3151 246 51 73 chr3 71396572 71398507 -88201276 - MYSERV6-int LTR ERVK -17 8942 7821 5 1129 360 0 0 0 chr3 71398507 71398547 -88201236 + (TA)n Simple_repeat Simple_repeat 2 41 0 5 1129 2454 267 75 59 chr3 71398547 71399079 -88200704 - MYSERV6-int LTR ERVK -1871 455 3 5 1129 492 258 15 52 chr3 71399214 71399349 -88200434 - B1_Mur3 SINE Alu -2 147 18 5 1129 3359 131 23 0 chr3 71399764 71400285 -88199498 - Lx2 LINE L1 0 6997 6465 5 1129 1809 185 39 39 chr3 71400292 71400652 -88199131 - Lx4A LINE L1 -27 7031 6672 5 1129 1919 167 134 70 chr3 71400653 71401405 -88198378 - RLTR13D3 LTR ERVK 0 1023 1 5 1129 443 232 0 0 chr3 71401405 71401504 -88198279 - Lx4A LINE L1 -382 6676 6578 5 1129 1829 192 94 15 chr3 71401497 71401899 -88197884 + Lx4A LINE L1 6133 6566 -492 5 1129 366 252 9 78 chr3 71401918 71402034 -88197749 - RLTR18-int LTR ERVK -510 4851 4744 5 1129 1020 179 131 32 chr3 71402067 71402349 -88197434 - MYSERV6-int LTR ERVK -2244 6715 6406 5 1129 25 31 0 0 chr3 71402382 71402414 -88197369 + AT_rich Low_complexity Low_complexity 1 32 0 5 1129 1359 273 88 4 chr3 71402721 71403084 -88196699 - RMER1B Other Other -339 727 354 5 1129 2968 86 0 5 chr3 71403084 71403482 -88196301 + MTA_Mm LTR MaLR 1 396 0 5 1129 682 330 103 24 chr3 71403482 71403692 -88196091 - RMER1A Other Other -627 403 177 5 1129 273 146 0 0 chr3 71404435 71404483 -88195300 + (A)n Simple_repeat Simple_repeat 1 48 0 5 1129 959 111 27 20 chr3 71404483 71404630 -88195153 + B1_Mus1 SINE Alu 1 148 0 5 1129 2259 160 17 65 chr3 71404845 71405550 -88194233 + RLTR13C2 LTR ERVK 1 922 -61 5 1129 946 91 34 40 chr3 71406343 71406492 -88193291 - B1_Mus1 SINE Alu 0 148 1 5 1129 4443 65 10 0 chr3 71406817 71407398 -88192385 + L1Md_F3 LINE L1 4997 5583 -300 6 1129 8205 37 0 1 chr3 71407402 71408383 -88191400 + L1Md_F3 LINE L1 5588 6567 -17 6 1129 3068 127 72 0 chr3 71408476 71408950 -88190833 - Lx3B LINE L1 -155 6818 6311 6 1129 229 169 47 78 chr3 71409133 71409197 -88190586 - Charlie7 DNA MER1_type -1193 1419 1358 6 1129 221 397 27 27 chr3 71409194 71409344 -88190439 - ID_B1 SINE B4 -8 216 67 6 1129 24 0 0 0 chr3 71409522 71409546 -88190237 + AT_rich Low_complexity Low_complexity 1 24 0 6 1129 1189 224 13 47 chr3 71410247 71410491 -88189292 + Lx7 LINE L1 5366 5602 -278 6 1129 1075 234 160 6 chr3 71410491 71410809 -88188974 - ORR1B2 LTR MaLR 0 367 1 6 1129 1189 219 228 35 chr3 71410809 71411031 -88188752 + Lx7 LINE L1 5603 5930 -1530 6 1129 329 230 123 9 chr3 71411476 71411590 -88188193 + Lx7 LINE L1 5919 6045 -1651 6 1129 24 85 0 0 chr3 71411756 71411815 -88187968 + AT_rich Low_complexity Low_complexity 1 59 0 6 1129 368 306 48 48 chr3 71411911 71412138 -88187645 + L1MCa LINE L1 916 1142 -5366 6 1129 7908 138 8 5 chr3 71412138 71413391 -88186392 + Lx3A LINE L1 5725 6981 0 6 1129 32 0 0 0 chr3 71413391 71413423 -88186360 + AT_rich Low_complexity Low_complexity 1 32 0 6 1129 549 0 0 0 chr3 71413592 71413653 -88186130 + (TAGA)n Simple_repeat Simple_repeat 4 64 0 6 1129 1288 193 18 0 chr3 71413737 71413965 -88185818 - Lx2B LINE L1 -370 6630 6399 6 1129 1619 200 27 30 chr3 71413965 71414295 -88185488 + Lx2B LINE L1 6611 6939 -61 6 1129 629 132 0 0 chr3 71414384 71414475 -88185308 + RMER17B LTR ERVK 1 91 -867 6 1129 462 273 9 0 chr3 71414477 71414587 -88185196 + RMER17B LTR ERVK 848 958 0 6 1129 397 252 19 10 chr3 71414605 71414709 -88185074 + B3 SINE B2 106 210 -6 6 1129 323 324 75 30 chr3 71414763 71415030 -88184753 + L1MCa LINE L1 1507 1785 -4723 6 1129 346 268 99 87 chr3 71415342 71415471 -88184312 + B3 SINE B2 2 136 -80 6 1129 312 91 0 0 chr3 71415471 71415515 -88184268 + (CA)n Simple_repeat Simple_repeat 1 44 0 6 1129 321 268 99 87 chr3 71415515 71415557 -88184226 + B2_Mm2 SINE B2 134 175 -20 6 1129 489 314 104 22 chr3 71415661 71416201 -88183582 + L1MCa LINE L1 1962 2548 -3773 6 1129 233 203 74 148 chr3 71416275 71416356 -88183427 - LTR41 LTR ERVL -566 202 128 6 1129 277 240 12 36 chr3 71416952 71417060 -88182723 + RMER21B LTR ERV1 347 535 -412 6 1129 378 345 64 90 chr3 71417200 71417557 -88182226 - L1MB7 LINE L1 -73 6111 5764 6 1129 345 311 129 33 chr3 71417859 71418246 -88181537 + L1MCa LINE L1 4978 5395 -923 6 1129 5611 128 30 3 chr3 71418368 71419281 -88180502 - Lx3A LINE L1 0 6981 6045 6 1129 22 0 0 0 chr3 71419361 71419383 -88180400 + AT_rich Low_complexity Low_complexity 1 22 0 6 1129 373 105 35 0 chr3 71419789 71419846 -88179937 + Lx9 LINE L1 7010 7068 -576 6 1129 274 86 0 0 chr3 71420501 71420536 -88179247 - Lx8 LINE L1 -362 7111 7077 6 1129 435 277 162 0 chr3 71420531 71420679 -88179104 + Lx8 LINE L1 7109 7280 -193 6 1129 932 282 18 0 chr3 71421045 71421268 -88178515 + RMER15 LTR ERVL 212 438 -137 6 1129 4853 75 0 0 chr3 71421268 71421905 -88177878 + L1Md_F2 LINE L1 4950 5586 -297 6 1129 7333 79 7 2 chr3 71421905 71422882 -88176901 + L1Md_F2 LINE L1 5587 6568 -14 6 1129 396 0 0 0 chr3 71422937 71422981 -88176802 + (TAAAA)n Simple_repeat Simple_repeat 5 48 0 6 1129 898 167 134 0 chr3 71423006 71423192 -88176591 + RLTR40 LTR ERVK 18 228 -589 6 1129 285 100 0 0 chr3 71423196 71423246 -88176537 + (TTAA)n Simple_repeat Simple_repeat 1 50 0 6 1129 440 273 97 7 chr3 71423246 71423390 -88176393 + RMER15 LTR ERVL 419 575 0 6 1129 606 257 28 0 chr3 71423398 71423542 -88176241 - MTEb LTR MaLR -226 153 6 6 1129 3015 26 14 0 chr3 71424797 71425149 -88174634 - IAPEY2_LTR LTR ERVK 0 357 1 6 1129 886 112 0 36 chr3 71425499 71425638 -88174145 - L1_Mus4 LINE L1 -414 6222 6089 6 1129 483 100 0 0 chr3 71425638 71425708 -88174075 + L1_Mus4 LINE L1 6242 6311 -325 6 1129 232 188 62 0 chr3 71425777 71425825 -88173958 - L1MD LINE L1 -854 5505 5455 6 1129 291 332 129 50 chr3 71426183 71426462 -88173321 + MER2 DNA MER2_type 37 337 -8 6 1129 4162 52 4 0 chr3 71426614 71427115 -88172668 + RLTR1C LTR ERV1 1 503 0 6 1129 216 196 0 0 chr3 71428316 71428362 -88171421 + A-rich Low_complexity Low_complexity 1 46 0 6 1129 432 0 0 0 chr3 71429050 71429098 -88170685 + (TA)n Simple_repeat Simple_repeat 2 49 0 6 1129 243 0 0 0 chr3 71429098 71429124 -88170659 + (TG)n Simple_repeat Simple_repeat 2 28 0 6 1129 271 259 60 43 chr3 71429393 71429510 -88170273 - Lx8 LINE L1 -11 7462 7344 6 1129 361 306 11 49 chr3 71429697 71429947 -88169836 - L1MD LINE L1 -906 5453 5212 6 1129 278 26 0 25 chr3 71430066 71430106 -88169677 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 6 1129 7038 165 24 33 chr3 71430106 71432007 -88167776 - Lx3B LINE L1 -8 6965 5091 6 1129 1501 145 29 7 chr3 71432010 71432288 -88167495 + L1_Mur1 LINE L1 3920 4203 -1683 6 1129 931 147 0 86 chr3 71432287 71432496 -88167287 - Lx3B LINE L1 -1905 3981 3791 6 1129 2038 168 15 178 chr3 71432528 71432908 -88166875 - Lx3B LINE L1 -2497 3389 3011 6 1129 629 25 0 12 chr3 71432908 71432988 -88166795 + (TTTC)n Simple_repeat Simple_repeat 2 80 0 6 1129 2038 168 15 178 chr3 71432988 71433090 -88166693 - L1_Mur1 LINE L1 -2876 3010 3010 6 1129 1129 95 0 0 chr3 71433090 71433238 -88166545 - B1_Mus1 SINE Alu 0 148 1 6 1129 2038 168 15 178 chr3 71433238 71433405 -88166378 - Lx3B LINE L1 -2876 3010 2845 6 1129 1784 152 58 42 chr3 71433407 71433469 -88166314 - Lx3B LINE L1 -4245 1641 1590 6 1129 4052 154 27 3 chr3 71433469 71434170 -88165613 - Lx2 LINE L1 0 6997 6280 6 141 1784 152 58 42 chr3 71434170 71434325 -88165458 - Lx3B LINE L1 -4297 1589 1436 6 1130 252 22 43 22 chr3 71434325 71434371 -88165412 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 6 1130 1784 131 114 14 chr3 71434371 71434725 -88165058 - Lx3B LINE L1 -4451 1435 1050 6 1130 8604 114 20 26 chr3 71434723 71435449 -88164334 - Lx2 LINE L1 -19 6978 6253 6 1130 2743 49 2 76 chr3 71435449 71435845 -88163938 - IAPLTR1_Mm LTR ERVK 0 367 1 6 1130 8604 114 20 26 chr3 71435845 71436410 -88163373 - Lx2 LINE L1 -745 6252 5686 6 1130 2778 87 10 18 chr3 71436410 71436808 -88162975 + L1_Mus2 LINE L1 6172 6566 0 6 1130 8604 114 20 26 chr3 71436808 71436871 -88162912 - Lx2 LINE L1 -1312 5685 5632 6 1130 696 83 0 0 chr3 71436921 71437017 -88162766 + B1_Mus2 SINE Alu 52 147 0 6 1130 318 50 0 0 chr3 71437017 71437057 -88162726 + (A)n Simple_repeat Simple_repeat 1 40 0 6 1130 1061 244 8 1 chr3 71438338 71438611 -88161172 - L1_Mur3 LINE L1 -1801 4076 3790 6 1130 2656 254 57 17 chr3 71438821 71440178 -88159605 - Lx5 LINE L1 -26 7434 5513 6 1130 462 250 36 0 chr3 71440498 71440638 -88159145 - Lx5 LINE L1 -732 5148 5004 6 1130 3582 203 50 136 chr3 71440625 71441316 -88158467 - Lx5 LINE L1 -1721 4159 3478 6 1130 843 132 48 32 chr3 71441316 71441504 -88158279 - L1_Mus3 LINE L1 -2 6636 6446 6 1130 3582 203 50 136 chr3 71441504 71441518 -88158265 - L1_Mur3 LINE L1 -2403 3477 3477 6 1130 4153 104 82 5 chr3 71441518 71442156 -88157627 - Lx3A LINE L1 0 6981 6295 6 1130 3582 203 50 136 chr3 71442156 71442755 -88157028 - Lx5 LINE L1 -2403 3477 2967 6 1130 49 43 0 0 chr3 71443649 71443719 -88156064 + AT_rich Low_complexity Low_complexity 1 70 0 6 1130 468 375 73 8 chr3 71443816 71444187 -88155596 - Lx8 LINE L1 -455 7018 6624 6 1130 424 342 29 14 chr3 71444190 71444412 -88155371 - Lx8 LINE L1 -929 6715 6338 6 1130 282 409 7 14 chr3 71445402 71445541 -88154242 + B1F SINE Alu 2 139 -10 6 1130 198 156 0 0 chr3 71445544 71445589 -88154194 + (CTAAA)n Simple_repeat Simple_repeat 1 45 0 6 1130 21 0 0 0 chr3 71445612 71445633 -88154150 + AT_rich Low_complexity Low_complexity 1 21 0 6 1130 288 70 0 0 chr3 71445996 71446039 -88153744 + (GA)n Simple_repeat Simple_repeat 2 44 0 6 1130 245 254 56 0 chr3 71446095 71446166 -88153617 + Lx9 LINE L1 6534 6608 -1036 6 1130 367 62 14 97 chr3 71446167 71446239 -88153544 - L1_Mus2 LINE L1 0 6566 6501 6 1130 2231 126 0 52 chr3 71446242 71446331 -88153452 - L1_Mm LINE L1 -509 5374 5288 6 1130 2147 60 3 3 chr3 71446331 71446613 -88153170 - L1Md_F3 LINE L1 -16 6568 6287 6 1130 2231 126 0 52 chr3 71446613 71446907 -88152876 - L1_Mm LINE L1 -596 5287 5011 6 1130 5167 87 0 0 chr3 71446922 71447614 -88152169 - L1_Mus1 LINE L1 0 6567 5876 6 1130 1520 92 0 0 chr3 71447614 71447820 -88151963 + L1_Mus1 LINE L1 5720 5925 -642 6 1130 1523 116 0 0 chr3 71447816 71448041 -88151742 - L1_Mm LINE L1 -856 5027 4803 6 1130 229 284 27 0 chr3 71448066 71448140 -88151643 + Lx9 LINE L1 6645 6720 -924 6 1130 715 281 119 14 chr3 71448987 71449341 -88150442 - Lx8 LINE L1 -699 6774 6384 6 1130 1484 116 133 22 chr3 71449463 71449824 -88149959 - Lx3A LINE L1 -4 6977 6577 6 1130 282 292 53 176 chr3 71449944 71450098 -88149685 + ORR1C2 LTR MaLR 1 135 -249 6 1130 909 115 65 0 chr3 71450098 71450237 -88149546 - B1_Mus1 SINE Alu 0 148 1 6 1130 282 292 53 176 chr3 71450237 71450327 -88149456 + ORR1C2 LTR MaLR 136 215 -169 6 1130 539 273 89 19 chr3 71450336 71450513 -88149270 + ORR1C2 LTR MaLR 89 330 -54 6 1130 795 290 47 14 chr3 71450552 71450828 -88148955 - Lx9 LINE L1 -183 7461 7177 6 1130 6625 198 29 2 chr3 71450947 71452770 -88147013 - Lx3C LINE L1 -2 6974 5101 6 1130 7984 78 20 1 chr3 71452769 71454586 -88145197 - L1Md_T LINE L1 0 6582 4718 6 1130 201 94 0 0 chr3 71454911 71454943 -88144840 + (CA)n Simple_repeat Simple_repeat 2 33 0 6 1130 289 29 0 0 chr3 71455044 71455079 -88144704 - U2 snRNA snRNA -153 35 1 6 1130 290 316 45 6 chr3 71455860 71456016 -88143767 - L1M2 LINE L1 -1428 4715 4554 6 1130 23 0 0 0 chr3 71456032 71456055 -88143728 + AT_rich Low_complexity Low_complexity 1 23 0 6 1130 281 319 33 11 chr3 71456283 71456375 -88143408 - MLT1G1-int LTR MaLR -545 864 771 6 1130 254 325 64 13 chr3 71457116 71457194 -88142589 - MLT1G1 LTR MaLR -42 537 456 6 1130 478 343 55 34 chr3 71457449 71457687 -88142096 + B4 SINE B4 5 247 -45 6 1130 321 283 21 42 chr3 71457781 71457877 -88141906 + B3 SINE B2 98 191 -25 6 1130 293 326 33 0 chr3 71458131 71458223 -88141560 - ORR1D1 LTR MaLR -38 336 242 6 1130 304 354 52 26 chr3 71458238 71458354 -88141429 - RMER10B LTR ERVL -11 387 269 6 1130 744 333 17 8 chr3 71458589 71458828 -88140955 - ORR1D1 LTR MaLR -125 249 9 6 1130 688 230 24 6 chr3 71458833 71458999 -88140784 - Lx9 LINE L1 -999 6645 6477 6 1130 4602 36 12 0 chr3 71459271 71459831 -88139952 + L1Md_F3 LINE L1 6017 6583 -1 6 1130 333 353 127 53 chr3 71461008 71461361 -88138422 - Lx8 LINE L1 -101 7372 6978 6 1130 991 135 0 20 chr3 71461361 71461512 -88138271 + B1_Mus1 SINE Alu 1 148 0 6 1130 333 353 127 53 chr3 71461512 71461664 -88138119 - Lx8 LINE L1 -496 6977 6830 6 1130 1157 61 0 0 chr3 71461905 71462053 -88137730 + B1_Mus1 SINE Alu 1 148 0 6 1130 261 0 0 0 chr3 71462057 71462086 -88137697 + (A)n Simple_repeat Simple_repeat 1 29 0 6 1130 283 318 46 31 chr3 71462454 71462714 -88137069 + L1_Mur3 LINE L1 1394 1657 -4223 6 1130 28 29 0 0 chr3 71462821 71462856 -88136927 + AT_rich Low_complexity Low_complexity 1 35 0 6 1130 410 292 68 51 chr3 71463282 71463459 -88136324 - RMER21A LTR ERV1 -335 612 433 6 1130 21 36 0 0 chr3 71464213 71464241 -88135542 + AT_rich Low_complexity Low_complexity 1 28 0 6 1130 180 407 0 42 chr3 71464948 71465066 -88134717 + L2 LINE L2 1492 1604 -1815 6 1130 186 43 0 0 chr3 71466343 71466366 -88133417 + (T)n Simple_repeat Simple_repeat 1 23 0 7 1130 322 355 76 21 chr3 71466661 71466805 -88132978 + B3 SINE B2 27 178 -38 7 1130 22 35 0 0 chr3 71467248 71467277 -88132506 + AT_rich Low_complexity Low_complexity 1 29 0 7 1130 1510 179 69 87 chr3 71467348 71467740 -88132043 - ORR1B1 LTR MaLR -9 385 1 7 1130 1951 252 108 14 chr3 71467741 71468388 -88131395 - Lx9 LINE L1 -60 7584 6877 7 1130 1249 73 6 6 chr3 71468639 71468818 -88130965 + (TTTC)n Simple_repeat Simple_repeat 1 179 0 7 1130 333 0 0 0 chr3 71468818 71468855 -88130928 + (TC)n Simple_repeat Simple_repeat 2 38 0 7 1130 6844 196 45 19 chr3 71468858 71470407 -88129376 - Lx4B LINE L1 -8 7050 5487 7 1130 1080 95 0 26 chr3 71470987 71471138 -88128645 - B1_Mm SINE Alu 0 147 1 7 1130 210 105 0 0 chr3 71472369 71472407 -88127376 + (A)n Simple_repeat Simple_repeat 1 38 0 7 1130 532 266 114 22 chr3 71472407 71472736 -88127047 + L1_Rod LINE L1 3335 3697 -2443 7 1130 537 241 193 62 chr3 71472749 71473204 -88126579 + L1_Rod LINE L1 4434 4948 -899 7 1130 305 111 37 0 chr3 71473293 71473347 -88126436 + (GAAA)n Simple_repeat Simple_repeat 1 56 0 7 1130 641 126 102 0 chr3 71473418 71473545 -88126238 - RLTR47_MM LTR ERV1 -83 449 310 7 1130 3806 47 0 12 chr3 71474710 71475189 -88124594 - L1_Mus1 LINE L1 -3 6564 6092 7 1130 2946 128 10 25 chr3 71475407 71475887 -88123896 + Lx2 LINE L1 5610 6082 -915 7 1130 252 0 0 0 chr3 71476553 71476581 -88123202 + (A)n Simple_repeat Simple_repeat 1 28 0 7 1130 296 102 17 0 chr3 71476987 71477046 -88122737 - L1_Mus3 LINE L1 0 6638 6579 7 1130 2498 27 3 0 chr3 71477030 71477324 -88122459 + L1_Mus2 LINE L1 5597 5891 -675 7 1130 2235 128 24 86 chr3 71479221 71479640 -88120143 + RLTR9C LTR ERVK 1 393 0 7 1130 31073 99 6 12 chr3 71481040 71486238 -88113545 + L1Md_F2 LINE L1 416 5584 -299 7 1130 7409 70 4 4 chr3 71486240 71487222 -88112561 + L1Md_F2 LINE L1 5587 6568 -14 7 1130 774 239 46 69 chr3 71487662 71488012 -88111771 - Lx9 LINE L1 -3 7641 7300 7 1130 461 246 18 18 chr3 71488006 71488118 -88111665 + Lx9 LINE L1 6731 6842 -802 7 1130 389 315 13 52 chr3 71488297 71488451 -88111332 + B3A SINE B2 10 157 -41 7 1130 578 85 11 0 chr3 71488462 71488556 -88111227 + (CA)n Simple_repeat Simple_repeat 1 95 0 7 1130 249 57 0 0 chr3 71489226 71489261 -88110522 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 7 1130 536 287 7 7 chr3 71489261 71489387 -88110396 - B1_Mur2 SINE Alu -11 138 12 7 1130 23 33 0 0 chr3 71489401 71489431 -88110352 + AT_rich Low_complexity Low_complexity 1 30 0 7 1130 470 314 46 29 chr3 71489518 71489692 -88110091 + B3 SINE B2 40 216 0 7 1130 207 167 0 0 chr3 71489962 71490004 -88109779 + (TG)n Simple_repeat Simple_repeat 1 42 0 7 1130 24 91 0 0 chr3 71490401 71490467 -88109316 + AT_rich Low_complexity Low_complexity 1 66 0 7 1130 311 96 19 0 chr3 71490671 71490723 -88109060 + (TA)n Simple_repeat Simple_repeat 2 54 0 7 1130 787 264 81 58 chr3 71490830 71491396 -88108387 - Lx7 LINE L1 -4 7692 6998 7 1130 1241 356 101 28 chr3 71491459 71492423 -88107360 + Lx7 LINE L1 6279 7312 -384 7 1130 465 19 0 0 chr3 71492515 71492569 -88107214 + (TG)n Simple_repeat Simple_repeat 1 54 0 7 1130 24 32 0 0 chr3 71492630 71492661 -88107122 + AT_rich Low_complexity Low_complexity 1 31 0 7 1130 23 54 0 0 chr3 71492783 71492820 -88106963 + AT_rich Low_complexity Low_complexity 1 37 0 7 1130 1073 65 0 0 chr3 71492974 71493113 -88106670 + B1_Mus2 SINE Alu 1 139 -8 7 1130 199 71 48 0 chr3 71493113 71493155 -88106628 + (CAA)n Simple_repeat Simple_repeat 2 45 0 7 1130 247 245 0 0 chr3 71493661 71493714 -88106069 + (TG)n Simple_repeat Simple_repeat 2 54 0 7 1130 2414 171 19 34 chr3 71494380 71494847 -88104936 - Lx LINE L1 -7 6647 6188 7 1130 23 68 0 0 chr3 71495205 71495249 -88104534 + AT_rich Low_complexity Low_complexity 1 44 0 7 1130 26263 103 15 18 chr3 71495259 71500000 -88099783 + L1Md_F LINE L1 392 5121 -762 7 1130 2349 59 43 3 chr3 71500000 71500323 -88099460 + L1Md_F2 LINE L1 5122 5457 -426 1 1130 7220 73 0 3 chr3 71500345 71501289 -88098494 + L1Md_F2 LINE L1 5641 6581 -1 1 1130 1445 268 51 21 chr3 71501292 71501815 -88097968 + Lx6 LINE L1 5794 6355 -695 2 1130 1064 247 85 80 chr3 71501917 71502304 -88097479 + Lx6 LINE L1 6844 7232 -228 2 1130 408 333 24 24 chr3 71502603 71502729 -88097054 + B3 SINE B2 1 126 -90 3 1130 3485 206 49 3 chr3 71504251 71505107 -88094676 + Lx5 LINE L1 5505 6418 -632 4 1130 746 202 12 6 chr3 71505115 71505279 -88094504 + L1_Mur2 LINE L1 5539 5703 -174 5 1130 1891 302 41 10 chr3 71505285 71505965 -88093818 + Lx5 LINE L1 6455 7030 -20 4 1130 509 338 106 29 chr3 71506132 71506510 -88093273 + MTC LTR MaLR 1 407 -14 6 1130 27 0 0 0 chr3 71506637 71506664 -88093119 + AT_rich Low_complexity Low_complexity 1 27 0 7 1130 218 384 21 120 chr3 71507001 71507143 -88092640 + RSINE1 SINE B4 38 165 0 8 1130 1474 205 171 59 chr3 71507186 71507742 -88092041 - RMER6C LTR ERVK -72 618 1 9 1130 3429 171 112 21 chr3 71508423 71509204 -88090579 + RLTR13D2 LTR ERVK 1 829 -194 1 1130 248 178 22 0 chr3 71509199 71509244 -88090539 + RLTR13D2 LTR ERVK 978 1023 0 1 1130 318 303 159 57 chr3 71509323 71509656 -88090127 + ORR1D2 LTR MaLR 4 370 0 1 1130 522 327 53 19 chr3 71509664 71509873 -88089910 + B3 SINE B2 1 216 0 1 1130 23 0 0 0 chr3 71510455 71510478 -88089305 + AT_rich Low_complexity Low_complexity 1 23 0 1 1130 257 150 17 0 chr3 71510804 71510846 -88088937 + (TA)n Simple_repeat Simple_repeat 2 44 0 1 1130 3810 47 11 0 chr3 71510846 71511314 -88088469 - MT2C_Mm LTR ERVL -2 473 1 1 1130 257 150 17 0 chr3 71511314 71511331 -88088452 + (TA)n Simple_repeat Simple_repeat 1 17 0 1 1130 1218 257 206 45 chr3 71511595 71512109 -88087674 + Lx7 LINE L1 6796 7392 -304 1 1130 705 70 0 0 chr3 71512150 71512250 -88087533 + (GA)n Simple_repeat Simple_repeat 2 101 0 1 1130 264 111 0 0 chr3 71513617 71513662 -88086121 + (TG)n Simple_repeat Simple_repeat 2 46 0 2 1130 24 96 0 0 chr3 71513940 71514013 -88085770 + AT_rich Low_complexity Low_complexity 1 73 0 2 1130 9425 27 1 0 chr3 71514413 71516210 -88083573 - L1Md_A LINE L1 -1 6581 4784 2 1130 6048 175 15 12 chr3 71516280 71518204 -88081579 + Lx LINE L1 4700 6629 -25 2 1130 25 31 0 0 chr3 71518428 71518460 -88081323 + AT_rich Low_complexity Low_complexity 1 32 0 2 1130 375 241 27 0 chr3 71518461 71518573 -88081210 - Lx9 LINE L1 -1 7643 7529 2 1130 533 64 13 0 chr3 71518597 71518675 -88081108 + (CA)n Simple_repeat Simple_repeat 2 80 0 2 1130 844 255 47 8 chr3 71518679 71518932 -88080851 - Lx9 LINE L1 -179 7465 7203 2 1130 1131 14 21 0 chr3 71519411 71519556 -88080227 + (TCTA)n Simple_repeat Simple_repeat 3 150 0 2 1130 641 88 78 0 chr3 71519770 71519872 -88079911 + L1_Mus2 LINE L1 6456 6565 -1 2 1130 326 322 118 47 chr3 71521467 71521629 -88078154 - Lx7 LINE L1 -977 6496 6319 2 1130 1260 245 104 58 chr3 71521629 71522176 -88077607 + RMER15 LTR ERVL 4 575 0 3 1130 326 322 118 47 chr3 71522176 71522225 -88077558 - Lx7 LINE L1 -1155 6318 6270 2 1130 549 314 72 68 chr3 71522612 71523649 -88076134 - Lx7 LINE L1 -1904 5792 4757 2 1130 413 91 0 29 chr3 71523657 71523725 -88076058 + (GGGAGA)n Simple_repeat Simple_repeat 3 68 0 3 1130 1173 310 55 57 chr3 71523725 71524191 -88075592 - L1M2 LINE L1 -1370 4773 4328 3 1130 216 0 0 0 chr3 71524191 71524215 -88075568 + (TG)n Simple_repeat Simple_repeat 1 24 0 3 1130 1173 310 55 57 chr3 71524215 71524771 -88075012 - L1M2 LINE L1 -1816 4327 3753 3 1130 28 61 0 0 chr3 71524809 71524858 -88074925 + AT_rich Low_complexity Low_complexity 1 49 0 3 1130 3172 113 40 29 chr3 71525068 71525633 -88074150 + RMER17D LTR ERVK 6 552 -337 3 1130 322 123 0 0 chr3 71525633 71525690 -88074093 - L1_Mus1 LINE L1 0 6567 6511 3 1130 1734 189 24 29 chr3 71525690 71526076 -88073707 + RMER17D LTR ERVK 488 888 -18 3 1130 385 204 32 0 chr3 71526978 71527071 -88072712 - Lx7 LINE L1 -384 7312 7217 3 1130 360 0 0 0 chr3 71527491 71527531 -88072252 + (CA)n Simple_repeat Simple_repeat 1 40 0 3 1130 315 71 0 0 chr3 71529723 71529765 -88070018 + (TA)n Simple_repeat Simple_repeat 2 43 0 3 1130 490 242 52 31 chr3 71530091 71530283 -88069500 - Lx7 LINE L1 -1804 5892 5697 3 1130 468 327 5 72 chr3 71530459 71530680 -88069103 + B3 SINE B2 3 208 -8 4 1130 186 43 0 0 chr3 71531032 71531055 -88068728 + (TTTTC)n Simple_repeat Simple_repeat 2 24 0 4 1130 2324 125 74 3 chr3 71531058 71531435 -88068348 - L1_Mus4 LINE L1 -9 6627 6224 4 1130 346 347 111 64 chr3 71531968 71532244 -88067539 + MT2A LTR ERVL 12 301 -232 4 1130 3094 61 5 10 chr3 71532244 71532642 -88067141 - MTA_Mm LTR MaLR 0 396 1 4 1130 346 347 111 64 chr3 71532642 71532707 -88067076 + MT2A LTR ERVL 302 369 -164 4 1130 5283 214 83 14 chr3 71533693 71535284 -88064499 - Lx4B LINE L1 -5 7053 5332 4 1130 1037 93 0 0 chr3 71536272 71536412 -88063371 + B1_Mus1 SINE Alu 3 142 -6 4 1130 278 36 35 52 chr3 71536418 71536476 -88063307 + (CAAA)n Simple_repeat Simple_repeat 2 58 0 4 1130 21 0 0 0 chr3 71536656 71536677 -88063106 + AT_rich Low_complexity Low_complexity 1 21 0 4 1130 189 74 0 0 chr3 71536991 71537018 -88062765 + (ATAAG)n Simple_repeat Simple_repeat 3 29 0 4 1130 586 280 53 11 chr3 71537359 71537547 -88062236 + Lx7 LINE L1 6554 6749 -947 5 1130 4746 158 43 18 chr3 71537557 71538410 -88061373 + Lx3C LINE L1 6102 6976 0 5 1130 316 239 0 0 chr3 71538442 71538513 -88061270 + L1_Mur2 LINE L1 4848 4918 -959 5 1130 459 52 0 0 chr3 71538727 71538785 -88060998 + (TAA)n Simple_repeat Simple_repeat 3 60 0 5 1130 243 200 9 9 chr3 71540207 71540325 -88059458 + CT-rich Low_complexity Low_complexity 1 118 0 5 1130 719 182 45 0 chr3 71540362 71540494 -88059289 - B1_Mus1 SINE Alu -8 140 3 5 1130 2384 39 0 0 chr3 71541201 71541486 -88058297 - L1Md_T LINE L1 -115 5768 5484 5 1130 6756 38 0 1 chr3 71541486 71542299 -88057484 + L1Md_T LINE L1 5770 6581 -1 5 1130 343 257 10 1 chr3 71542356 71542469 -88057314 - L1MA4 LINE L1 -400 5897 5785 5 1130 22 0 0 0 chr3 71542717 71542739 -88057044 + AT_rich Low_complexity Low_complexity 1 22 0 5 1130 236 291 38 0 chr3 71542950 71543029 -88056754 + L1MA5 LINE L1 6178 6259 -41 5 1130 29 28 0 0 chr3 71543034 71543070 -88056713 + AT_rich Low_complexity Low_complexity 1 36 0 6 1130 4216 92 5 8 chr3 71543478 71544092 -88055691 - L1_Mm LINE L1 -1255 4628 4017 6 1130 3038 82 11 16 chr3 71544092 71544527 -88055256 + L1_Mus1 LINE L1 6133 6565 -2 6 1130 198 71 0 0 chr3 71544551 71544579 -88055204 + (TAAA)n Simple_repeat Simple_repeat 1 28 0 6 1130 24 32 0 0 chr3 71544579 71544610 -88055173 + AT_rich Low_complexity Low_complexity 1 31 0 6 1130 186 103 0 0 chr3 71544659 71544688 -88055095 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 6 1130 264 324 169 13 chr3 71544693 71544918 -88054865 + RLTR15 LTR ERVK 3 262 -97 6 1130 228 318 121 48 chr3 71545072 71545237 -88054546 - LTR68 LTR ERV1 -402 338 162 6 1130 369 0 0 0 chr3 71545266 71545307 -88054476 + (TG)n Simple_repeat Simple_repeat 2 42 0 6 1130 1650 75 4 4 chr3 71545308 71545535 -88054248 - L1Md_F2 LINE L1 -8 6574 6348 6 1130 25 51 0 0 chr3 71545918 71545957 -88053826 + AT_rich Low_complexity Low_complexity 1 39 0 7 1130 1119 180 31 0 chr3 71546504 71546732 -88053051 + Lx2A1 LINE L1 6774 7008 0 7 1130 943 99 61 6 chr3 71547629 71547792 -88051991 - L1Md_F2 LINE L1 -3 6579 6408 7 1130 14070 144 21 86 chr3 71547792 71553709 -88046074 - L1Md_F LINE L1 -831 5052 214 7 1130 333 47 0 0 chr3 71554832 71554875 -88044908 + (CA)n Simple_repeat Simple_repeat 2 44 0 7 1130 2782 156 21 45 chr3 71555336 71555867 -88043916 + Lx LINE L1 6131 6648 -6 7 1130 778 244 56 32 chr3 71556488 71556704 -88043079 + Lx6 LINE L1 6668 6888 -572 7 1130 549 280 45 26 chr3 71556715 71556869 -88042914 - B3A SINE B2 -37 161 5 7 1130 223 127 35 35 chr3 71557184 71557241 -88042542 + A-rich Low_complexity Low_complexity 3 59 0 7 1130 210 219 15 15 chr3 71557415 71557480 -88042303 + (TTATA)n Simple_repeat Simple_repeat 5 69 0 7 1130 681 274 31 16 chr3 71558038 71558231 -88041552 - ORR1D1 LTR MaLR 0 374 179 8 1130 271 160 27 0 chr3 71558390 71558465 -88041318 + CT-rich Low_complexity Low_complexity 2 78 0 8 1130 1283 44 15 0 chr3 71558465 71558808 -88040975 + (CA)n Simple_repeat Simple_repeat 1 348 0 8 1130 230 236 33 22 chr3 71559036 71559127 -88040656 + (CATATA)n Simple_repeat Simple_repeat 4 95 0 8 1130 316 362 25 22 chr3 71560506 71560683 -88039100 + B4A SINE B4 119 292 0 8 1130 281 140 18 0 chr3 71560718 71560775 -88039008 + CT-rich Low_complexity Low_complexity 1 58 0 8 1130 22 0 0 0 chr3 71560867 71560889 -88038894 + AT_rich Low_complexity Low_complexity 1 22 0 8 1130 194 0 39 0 chr3 71561717 71561743 -88038040 + (TTTG)n Simple_repeat Simple_repeat 1 27 0 8 1130 864 189 7 0 chr3 71561745 71561888 -88037895 - B1_Mur2 SINE Alu -5 144 1 8 1130 1118 158 0 0 chr3 71562259 71562442 -88037341 - ORR1A2 LTR MaLR 0 327 145 8 1130 2785 154 10 8 chr3 71562433 71562685 -88037098 - ORR1A2-int LTR MaLR -1477 486 235 8 1130 224 30 30 0 chr3 71562685 71562718 -88037065 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 9 1130 2785 154 10 8 chr3 71562718 71562950 -88036833 - ORR1A2-int LTR MaLR -1729 234 2 8 1130 1972 151 19 0 chr3 71562954 71563265 -88036518 - ORR1A2 LTR MaLR -8 319 3 8 1130 266 270 0 0 chr3 71563415 71563489 -88036294 - Lx7 LINE L1 -1764 5932 5859 9 1130 231 324 46 72 chr3 71563643 71563796 -88035987 + RMER4B LTR ERVK 39 187 -398 9 1130 2695 266 73 18 chr3 71563934 71564969 -88034814 - Lx7 LINE L1 -51 5829 4738 9 141 1154 310 67 36 chr3 71564967 71565577 -88034206 + Lx7 LINE L1 5990 6618 -1078 9 1131 1878 236 54 30 chr3 71565674 71565716 -88034067 - RLTR20B3 LTR ERVK -53 524 483 9 1131 279 0 0 0 chr3 71565716 71565747 -88034036 + (CA)n Simple_repeat Simple_repeat 2 32 0 9 1131 1878 236 54 30 chr3 71565747 71566206 -88033577 - RLTR20B3 LTR ERVK -95 482 13 9 1131 1110 304 104 35 chr3 71566215 71566809 -88032974 + Lx7 LINE L1 6733 7367 -329 9 1131 279 319 108 13 chr3 71567057 71567362 -88032421 + Lx9 LINE L1 7233 7566 -78 9 1131 39 60 0 0 chr3 71567628 71567695 -88032088 + AT_rich Low_complexity Low_complexity 1 67 0 9 1131 279 0 0 0 chr3 71568026 71568057 -88031726 + (TA)n Simple_repeat Simple_repeat 2 32 0 9 1131 688 266 92 21 chr3 71568060 71568287 -88031496 + MTD LTR MaLR 4 230 -170 9 1131 257 186 0 14 chr3 71568347 71568418 -88031365 + (CAT)n Simple_repeat Simple_repeat 3 72 0 1 1131 30 0 0 0 chr3 71568979 71569009 -88030774 + AT_rich Low_complexity Low_complexity 1 30 0 1 1131 6647 123 26 7 chr3 71569131 71570205 -88029578 - Lx3_Mus LINE L1 -2 7007 5914 1 1131 1832 47 0 0 chr3 71570205 71570440 -88029343 + MTA_Mm LTR MaLR 2 236 -160 1 1131 15812 101 17 6 chr3 71570464 71572813 -88026970 - L1_Mur1 LINE L1 -3 5883 3510 1 1131 180 0 0 0 chr3 71572816 71572836 -88026947 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1 1131 464 88 15 0 chr3 71572836 71572904 -88026879 - L1_Mur1 LINE L1 -2485 3401 3333 1 1131 4772 100 24 7 chr3 71572904 71573602 -88026181 - L1Md_F2 LINE L1 -12 6570 5861 1 1131 8268 87 8 3 chr3 71573602 71574776 -88025007 - L1_Mm LINE L1 -486 5397 4218 1 1131 2003 159 3 11 chr3 71574776 71575158 -88024625 - L1_Mur1 LINE L1 -2544 3342 2964 1 1131 14125 21 0 0 chr3 71575154 71576801 -88022982 + L1Md_T LINE L1 3940 5586 -297 1 1131 8932 6 0 1 chr3 71576801 71577798 -88021985 + L1Md_T LINE L1 5587 6582 0 1 1131 227 135 0 0 chr3 71577805 71577842 -88021941 - L1_Mur1 LINE L1 -2907 2970 2934 1 1131 22 0 0 0 chr3 71578254 71578276 -88021507 + AT_rich Low_complexity Low_complexity 1 22 0 1 1131 23 33 0 0 chr3 71578368 71578398 -88021385 + AT_rich Low_complexity Low_complexity 1 30 0 1 1131 371 389 16 22 chr3 71578702 71578886 -88020897 + B4A SINE B4 96 278 -14 1 1131 36 0 0 0 chr3 71579661 71579697 -88020086 + AT_rich Low_complexity Low_complexity 1 36 0 1 1131 25 31 0 0 chr3 71579892 71579924 -88019859 + AT_rich Low_complexity Low_complexity 1 32 0 1 1131 245 307 107 59 chr3 71580066 71580253 -88019530 - B3A SINE B2 0 198 3 1 1131 471 18 0 0 chr3 71580705 71580761 -88019022 + (CA)n Simple_repeat Simple_repeat 2 57 0 1 1131 239 269 142 47 chr3 71580846 71581100 -88018683 + L1MB4 LINE L1 5710 5987 -193 1 1131 1365 245 69 44 chr3 71581174 71581763 -88018020 + Lx6 LINE L1 5725 6353 -697 1 1131 285 320 64 34 chr3 71581927 71582131 -88017652 - L1_Mur3 LINE L1 -7002 710 501 1 1131 29 0 0 0 chr3 71583007 71583036 -88016747 + AT_rich Low_complexity Low_complexity 1 29 0 1 1131 368 288 13 25 chr3 71583737 71583894 -88015889 - L1M1 LINE L1 -511 5789 5635 1 1131 2284 172 161 40 chr3 71583916 71584461 -88015322 + RMER19C LTR ERVK 1 611 0 1 1131 342 0 0 0 chr3 71584710 71584748 -88015035 + (TG)n Simple_repeat Simple_repeat 2 39 0 1 1131 228 250 0 30 chr3 71584770 71584836 -88014947 + GA-rich Low_complexity Low_complexity 3 66 0 1 1131 3926 170 20 1 chr3 71585014 71585715 -88014068 - Lx LINE L1 -3 6651 5938 1 1131 22 35 0 0 chr3 71586120 71586149 -88013634 + AT_rich Low_complexity Low_complexity 1 29 0 1 1131 5047 138 23 7 chr3 71586200 71587067 -88012716 + L1_Mm LINE L1 4902 5782 -101 1 1131 20560 177 26 70 chr3 71587066 71588557 -88011226 + L1VL1 LINE L1 260 1708 -4178 1 1131 629 117 0 64 chr3 71588557 71588667 -88011116 + B1_Mm SINE Alu 45 147 0 1 1131 20560 177 26 70 chr3 71588667 71592932 -88006851 + L1VL1 LINE L1 1709 5857 -29 1 1131 598 110 9 9 chr3 71592933 71593043 -88006740 + L1_Mus4 LINE L1 6522 6631 -5 1 1131 943 282 88 104 chr3 71593046 71593070 -88006713 + MTC-int LTR MaLR 246 272 -826 1 1131 347 41 0 20 chr3 71593070 71593120 -88006663 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 1 1131 1073 268 80 82 chr3 71593120 71593823 -88005960 + MTC-int LTR MaLR 273 1098 -160 1 1131 336 260 21 78 chr3 71593843 71594035 -88005748 - Lx7 LINE L1 0 7696 7516 1 1131 656 288 43 4 chr3 71594083 71594317 -88005466 - Lx7 LINE L1 -283 7413 7171 1 1131 757 316 22 17 chr3 71594327 71594559 -88005224 + Lx7 LINE L1 6937 7169 -527 1 1131 695 202 31 42 chr3 71594559 71594750 -88005033 + MTC-int LTR MaLR 1068 1256 -2 1 1131 1530 260 60 18 chr3 71594756 71595155 -88004628 + MTC LTR MaLR 6 421 0 1 1131 1589 350 48 25 chr3 71595235 71596204 -88003579 + Lx8 LINE L1 6231 7222 -251 1 1131 447 151 35 0 chr3 71596390 71596476 -88003307 - Lx3B LINE L1 -1 6972 6884 1 1131 934 288 164 21 chr3 71596497 71596923 -88002860 + RMER15 LTR ERVL 45 531 -44 1 1131 498 108 0 0 chr3 71597101 71597175 -88002608 + (TCCC)n Simple_repeat Simple_repeat 4 77 0 1 1131 266 358 9 9 chr3 71598371 71598481 -88001302 + B3A SINE B2 6 115 -83 1 1131 22 0 0 0 chr3 71599425 71599447 -88000336 + AT_rich Low_complexity Low_complexity 1 22 0 1 1131 291 93 0 0 chr3 71599482 71599525 -88000258 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 1131 29 0 0 0 chr3 71600085 71600114 -87999669 + AT_rich Low_complexity Low_complexity 1 29 0 1 1131 30 0 0 0 chr3 71600328 71600358 -87999425 + AT_rich Low_complexity Low_complexity 1 30 0 1 1131 219 108 0 0 chr3 71600438 71600458 -87999325 + (CA)n Simple_repeat Simple_repeat 2 21 0 1 1131 724 69 8 8 chr3 71600458 71600575 -87999208 + (TA)n Simple_repeat Simple_repeat 1 117 0 1 1131 219 108 0 0 chr3 71600575 71600591 -87999192 + (CA)n Simple_repeat Simple_repeat 2 17 0 1 1131 374 391 61 4 chr3 71600724 71601001 -87998782 - Lx8 LINE L1 -198 7275 6983 1 1131 5438 138 28 66 chr3 71601589 71602336 -87997447 + L1VL2 LINE L1 364 1111 -5523 1 1131 1075 95 0 20 chr3 71602336 71602486 -87997297 + B1_Mus2 SINE Alu 1 147 0 1 1131 11430 118 35 30 chr3 71602486 71604119 -87995664 + L1VL2 LINE L1 1112 2698 -1216 1 1131 180 0 0 0 chr3 71604119 71604139 -87995644 + (CA)n Simple_repeat Simple_repeat 1 20 0 1 1131 11430 156 110 23 chr3 71604139 71605459 -87994324 + L1VL2 LINE L1 2699 4422 -1461 1 1131 8632 126 20 10 chr3 71605453 71606816 -87992967 + Lx3_Mus LINE L1 5615 6991 -18 1 1131 441 0 0 0 chr3 71606816 71606865 -87992918 + (CAATA)n Simple_repeat Simple_repeat 2 50 0 1 1131 5163 174 11 31 chr3 71606866 71607910 -87991873 + L1VL2 LINE L1 4478 5500 -383 1 1131 2753 173 11 34 chr3 71607910 71608443 -87991340 + Lx LINE L1 6127 6647 -7 1 1131 225 0 0 0 chr3 71608527 71608552 -87991231 + (TC)n Simple_repeat Simple_repeat 2 26 0 1 1131 1193 36 0 0 chr3 71608577 71608717 -87991066 - B1_Mm SINE Alu -7 140 1 1 1131 762 40 0 29 chr3 71608744 71608848 -87990935 - B1_Mus2 SINE Alu 0 147 47 1 1131 200 241 23 57 chr3 71609133 71609221 -87990562 + GA-rich Low_complexity Low_complexity 1 85 0 1 1131 182 108 0 51 chr3 71609956 71609995 -87989788 + (TATG)n Simple_repeat Simple_repeat 2 38 0 1 1131 300 288 66 22 chr3 71610652 71610833 -87988950 - L1M3 LINE L1 -1079 5061 4873 1 1131 22 56 0 0 chr3 71611932 71611968 -87987815 + AT_rich Low_complexity Low_complexity 1 36 0 1 1131 218 329 13 0 chr3 71612011 71612087 -87987696 + CT-rich Low_complexity Low_complexity 4 80 0 1 1131 6146 34 20 0 chr3 71612107 71612854 -87986929 - L1Md_F2 LINE L1 -2 6580 5819 1 1131 234 185 0 18 chr3 71614171 71614226 -87985557 + T-rich Low_complexity Low_complexity 5 58 0 1 1131 1059 104 0 0 chr3 71614227 71614371 -87985412 - B1_Mm SINE Alu -2 145 2 1 1131 22 0 0 0 chr3 71615447 71615469 -87984314 + AT_rich Low_complexity Low_complexity 1 22 0 1 1131 457 221 27 27 chr3 71615469 71615618 -87984165 - Lx4B LINE L1 0 7058 6910 1 1131 290 239 14 0 chr3 71615641 71615712 -87984071 - Lx4B LINE L1 -295 6763 6692 1 1131 333 0 0 0 chr3 71615867 71615904 -87983879 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 1131 381 226 64 36 chr3 71615904 71616014 -87983769 - Lx9 LINE L1 -217 7427 7315 1 1131 5501 73 1 0 chr3 71616023 71616738 -87983045 - L1_Mus1 LINE L1 -2 6565 5850 1 1131 288 406 8 0 chr3 71616761 71616884 -87982899 + B1F SINE Alu 1 124 -25 1 1131 24 0 0 0 chr3 71617006 71617030 -87982753 + AT_rich Low_complexity Low_complexity 1 24 0 1 1131 601 99 32 24 chr3 71617372 71617496 -87982287 + L1_Mus3 LINE L1 6514 6638 0 1 1131 456 99 0 0 chr3 71617953 71618024 -87981759 + (TG)n Simple_repeat Simple_repeat 2 72 0 1 1131 21 36 0 0 chr3 71618216 71618244 -87981539 + AT_rich Low_complexity Low_complexity 1 28 0 1 1131 21 0 0 0 chr3 71618269 71618290 -87981493 + AT_rich Low_complexity Low_complexity 1 21 0 1 1131 507 33 0 0 chr3 71618290 71618351 -87981432 + (CA)n Simple_repeat Simple_repeat 2 62 0 1 1131 801 155 139 21 chr3 71618933 71619218 -87980565 + RMER6C LTR ERVK 1 359 -331 1 1131 369 0 0 0 chr3 71619698 71619739 -87980044 + (TA)n Simple_repeat Simple_repeat 2 42 0 1 1131 29 28 0 0 chr3 71619807 71619843 -87979940 + AT_rich Low_complexity Low_complexity 1 36 0 1 1131 1325 91 27 0 chr3 71620057 71620243 -87979540 - B2_Mm2 SINE B2 -3 192 2 1 1131 30 0 0 0 chr3 71621030 71621060 -87978723 + AT_rich Low_complexity Low_complexity 1 30 0 1 1131 333 68 0 0 chr3 71622486 71622530 -87977253 + (TAAA)n Simple_repeat Simple_repeat 2 45 0 1 1131 810 215 249 8 chr3 71622555 71622803 -87976980 + L1_Mur2 LINE L1 915 1233 -5853 1 1131 1628 55 9 18 chr3 71622803 71623026 -87976757 + L1Md_F3 LINE L1 6364 6584 0 1 1131 810 200 110 4 chr3 71623026 71623231 -87976552 + L1_Mur2 LINE L1 1234 1463 -4414 1 1131 571 283 21 5 chr3 71623248 71623436 -87976347 + Lx5 LINE L1 6858 7048 -2 1 1131 21 0 0 0 chr3 71623641 71623662 -87976121 + AT_rich Low_complexity Low_complexity 1 21 0 1 1131 22 0 0 0 chr3 71624455 71624477 -87975306 + AT_rich Low_complexity Low_complexity 1 22 0 1 1131 449 201 97 32 chr3 71625253 71625365 -87974418 + RLTR43A LTR ERVK 201 314 -50 1 1131 603 0 0 0 chr3 71625365 71625432 -87974351 + (TC)n Simple_repeat Simple_repeat 1 67 0 1 1131 449 201 97 32 chr3 71625432 71625473 -87974310 + RLTR43A LTR ERVK 315 363 -1 1 1131 21 36 0 0 chr3 71625482 71625510 -87974273 + AT_rich Low_complexity Low_complexity 1 28 0 1 1131 717 107 0 10 chr3 71626185 71626289 -87973494 - Lx3C LINE L1 -1210 5766 5664 1 1131 312 48 0 0 chr3 71626512 71626554 -87973229 + (CA)n Simple_repeat Simple_repeat 1 42 0 1 1131 470 17 17 0 chr3 71626760 71626819 -87972964 + (TCTA)n Simple_repeat Simple_repeat 2 61 0 1 1131 390 374 26 57 chr3 71627287 71627480 -87972303 + B3A SINE B2 1 187 -11 1 1131 1190 61 0 0 chr3 71627532 71627679 -87972104 + B1_Mm SINE Alu 1 147 0 1 1131 300 188 0 0 chr3 71627679 71627743 -87972040 + A-rich Low_complexity Low_complexity 1 64 0 1 1131 9684 171 12 60 chr3 71627786 71630016 -87969767 - Lx LINE L1 -7 6647 4629 1 1131 228 86 0 0 chr3 71630016 71630051 -87969732 + (TTG)n Simple_repeat Simple_repeat 2 36 0 1 1131 9684 172 9 110 chr3 71630051 71630927 -87968856 - Lx LINE L1 -1255 4628 3766 1 1131 2091 180 0 55 chr3 71630958 71631411 -87968372 + L1_Mur2 LINE L1 3327 3754 -2123 1 1131 237 180 0 0 chr3 71632049 71632099 -87967684 + (CATATA)n Simple_repeat Simple_repeat 4 53 0 1 1131 233 282 0 14 chr3 71632545 71632617 -87967166 + GA-rich Low_complexity Low_complexity 4 74 0 1 1131 1650 237 15 48 chr3 71632873 71633451 -87966332 - Lx5 LINE L1 -465 6585 5924 2 1131 1816 289 43 2 chr3 71633447 71633852 -87965931 + Lx5 LINE L1 6565 6976 -74 2 1131 1859 99 30 27 chr3 71633852 71634153 -87965630 + L1_Mus1 LINE L1 6260 6561 -6 2 1131 306 0 0 0 chr3 71634159 71634193 -87965590 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 2 1131 1816 289 43 2 chr3 71634193 71634242 -87965541 + Lx5 LINE L1 6983 7044 -6 2 1131 455 339 110 49 chr3 71634410 71634674 -87965109 + MTEb LTR MaLR 1 280 -99 2 1131 1774 239 117 17 chr3 71634690 71635726 -87964057 + L1_Mur3 LINE L1 914 2057 -3823 2 1131 540 56 0 0 chr3 71635726 71635798 -87963985 + (CA)n Simple_repeat Simple_repeat 2 73 0 2 1131 1082 259 184 40 chr3 71635798 71636005 -87963778 + L1_Mur3 LINE L1 2085 2309 -3568 2 1131 3282 208 58 38 chr3 71636010 71636952 -87962831 + L1_Mur3 LINE L1 4035 4995 -885 2 1131 2304 107 39 16 chr3 71636953 71637316 -87962467 + Lx LINE L1 6192 6562 -92 2 1131 471 35 0 0 chr3 71637317 71637374 -87962409 + (TA)n Simple_repeat Simple_repeat 1 57 0 2 1131 246 62 0 0 chr3 71637375 71637407 -87962376 + (GA)n Simple_repeat Simple_repeat 2 33 0 2 1131 491 236 0 7 chr3 71637533 71637674 -87962109 + (TA)n Simple_repeat Simple_repeat 2 141 0 2 1131 373 303 50 25 chr3 71637674 71637833 -87961950 + Lx7 LINE L1 6175 6337 -1359 2 1131 358 217 117 62 chr3 71637833 71637961 -87961822 + Lx7 LINE L1 6482 6616 -1080 2 1131 1447 291 68 59 chr3 71637957 71638442 -87961341 + Lx7 LINE L1 7027 7527 -169 2 1131 1397 192 45 75 chr3 71638442 71638774 -87961009 + ORR1A3 LTR MaLR 5 326 0 2 1131 1447 291 68 59 chr3 71638774 71638952 -87960831 + Lx7 LINE L1 7528 7696 0 2 1131 253 272 0 52 chr3 71639373 71639470 -87960313 + L1M5 LINE L1 5742 5833 -331 2 1131 279 0 0 0 chr3 71639782 71639813 -87959970 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 2 1131 497 355 80 46 chr3 71640128 71640541 -87959242 + LTR40a LTR ERVL 91 517 -2 2 1131 636 81 0 0 chr3 71640663 71640750 -87959033 + (TC)n Simple_repeat Simple_repeat 2 88 0 2 1131 359 328 39 85 chr3 71641567 71641957 -87957826 - L1_Mur3 LINE L1 -80 5800 5429 2 1131 4893 231 38 52 chr3 71641965 71642502 -87957281 + L1_Mur3 LINE L1 4323 4824 -1056 2 1131 180 0 0 0 chr3 71642502 71642522 -87957261 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 2 1131 186 118 0 0 chr3 71642522 71642556 -87957227 + (CA)n Simple_repeat Simple_repeat 1 34 0 2 1131 4893 231 38 52 chr3 71642556 71643554 -87956229 + L1_Mur3 LINE L1 4825 5837 -43 2 1131 2805 142 2 9 chr3 71643550 71643998 -87955785 - L1_Mm LINE L1 -73 5810 5366 2 1131 873 266 30 15 chr3 71643982 71644245 -87955538 + Lx7 LINE L1 6768 7034 -662 2 1131 568 259 124 5 chr3 71644383 71644569 -87955214 + Lx6 LINE L1 7049 7256 -204 2 1131 831 214 30 5 chr3 71644593 71644790 -87954993 - Lx2 LINE L1 -3 6994 6793 2 1131 1841 258 60 70 chr3 71645145 71645868 -87953915 + Lx7 LINE L1 6982 7696 0 2 1131 306 0 0 0 chr3 71646903 71646937 -87952846 + (TG)n Simple_repeat Simple_repeat 1 34 0 2 1131 642 331 96 76 chr3 71647105 71647800 -87951983 + Lx8 LINE L1 6392 7098 -598 2 1131 1509 192 37 31 chr3 71648717 71649044 -87950739 - ORR1A4 LTR MaLR 0 329 1 2 1131 321 345 0 41 chr3 71649175 71649296 -87950487 - Lx5 LINE L1 -317 6733 6618 2 1131 270 0 0 0 chr3 71649430 71649460 -87950323 + (TA)n Simple_repeat Simple_repeat 2 31 0 2 1131 29 28 0 0 chr3 71650751 71650787 -87948996 + AT_rich Low_complexity Low_complexity 1 36 0 2 1131 417 312 53 10 chr3 71651358 71651565 -87948218 + B3 SINE B2 1 216 0 2 1131 1262 133 145 4 chr3 71651662 71651903 -87947880 - Lx3A LINE L1 -13 6968 6694 2 1131 2043 117 3 0 chr3 71651898 71652196 -87947587 - Lx3_Mus LINE L1 -348 6661 6363 2 1131 2314 146 8 15 chr3 71652233 71652630 -87947153 - L1_Mus4 LINE L1 -1 6635 6242 2 1131 2046 85 4 0 chr3 71652630 71652902 -87946881 + L1_Mus4 LINE L1 5948 6220 -418 2 1131 2571 152 41 2 chr3 71652883 71653319 -87946464 - Lx3_Mus LINE L1 -619 6390 5938 2 1131 24 67 0 0 chr3 71653685 71653730 -87946053 + AT_rich Low_complexity Low_complexity 1 45 0 2 1131 26 0 0 0 chr3 71653915 71653941 -87945842 + AT_rich Low_complexity Low_complexity 1 26 0 2 1131 21 89 0 0 chr3 71654055 71654111 -87945672 + AT_rich Low_complexity Low_complexity 1 56 0 2 1131 2271 115 28 13 chr3 71654116 71654496 -87945287 - L1_Mus2 LINE L1 -20 6546 6179 2 1131 1976 109 10 7 chr3 71654488 71654784 -87944999 + L1_Mus2 LINE L1 5888 6184 -382 2 1131 5384 147 18 31 chr3 71655152 71656557 -87943226 - Lx LINE L1 -287 6367 4992 2 1131 1114 82 0 0 chr3 71656557 71656704 -87943079 - B1_Mm SINE Alu 0 147 1 2 1131 4673 199 20 57 chr3 71656704 71656876 -87942907 - Lx LINE L1 -892 4991 4826 2 1131 1869 120 17 0 chr3 71656876 71657177 -87942606 + MusHAL1 LINE L1 960 1265 -1447 2 1131 10893 187 168 20 chr3 71657177 71661230 -87938553 + L1VL1 LINE L1 217 4676 -1210 2 1131 1247 107 0 0 chr3 71661235 71661412 -87938371 + L1_Mus1 LINE L1 6390 6566 -1 2 1131 22 35 0 0 chr3 71661412 71661441 -87938342 + AT_rich Low_complexity Low_complexity 1 29 0 2 1131 5084 129 51 4 chr3 71661443 71662014 -87937769 + MusHAL1 LINE L1 1251 1848 -864 2 1131 1026 141 0 0 chr3 71662014 71662184 -87937599 + (GAA)n Simple_repeat Simple_repeat 1 170 0 2 1131 5084 129 51 4 chr3 71662184 71662526 -87937257 + MusHAL1 LINE L1 1849 2207 -505 2 1131 219 146 0 0 chr3 71662630 71662671 -87937112 + (TCTG)n Simple_repeat Simple_repeat 4 44 0 2 1131 438 20 0 0 chr3 71662676 71662727 -87937056 + (TTA)n Simple_repeat Simple_repeat 3 53 0 2 1131 11636 2 0 0 chr3 71665999 71667304 -87932479 + L1Md_A LINE L1 4282 5586 -297 2 1131 8931 3 0 0 chr3 71667304 71668300 -87931483 + L1Md_A LINE L1 5587 6582 0 2 1131 276 357 129 30 chr3 71669965 71670268 -87929515 - ORR1E LTR MaLR -6 364 32 2 1131 27 49 0 0 chr3 71670412 71670453 -87929330 + AT_rich Low_complexity Low_complexity 1 41 0 2 1131 5017 121 11 13 chr3 71670623 71671415 -87928368 + Lx2A1 LINE L1 6218 7008 0 2 1131 718 178 55 94 chr3 71671867 71672102 -87927681 + L1_Mur2 LINE L1 4711 4936 -941 2 1131 245 193 36 15 chr3 71672347 71672484 -87927299 + (TA)n Simple_repeat Simple_repeat 2 141 0 2 1131 830 66 8 0 chr3 71672670 71672792 -87926991 + (CA)n Simple_repeat Simple_repeat 2 124 0 2 1131 21 0 0 0 chr3 71672866 71672887 -87926896 + AT_rich Low_complexity Low_complexity 1 21 0 2 1131 670 287 45 57 chr3 71673614 71673947 -87925836 + Lx9 LINE L1 7308 7636 -8 2 1131 24 0 0 0 chr3 71674444 71674468 -87925315 + AT_rich Low_complexity Low_complexity 1 24 0 2 1131 1813 262 106 10 chr3 71674491 71675199 -87924584 + L1_Mur3 LINE L1 538 1313 -6415 2 1131 7420 199 45 23 chr3 71675168 71676357 -87923426 + L1_Mur3 LINE L1 3044 4278 -1599 2 1131 258 56 0 0 chr3 71676357 71676393 -87923390 + (CAAAA)n Simple_repeat Simple_repeat 3 38 0 2 1131 7420 199 45 23 chr3 71676393 71677032 -87922751 + L1_Mur3 LINE L1 4279 4912 -965 2 1131 466 177 0 0 chr3 71677058 71677137 -87922646 + L1_Mur3 LINE L1 5104 5182 -695 2 1131 378 0 0 0 chr3 71677137 71677179 -87922604 + (TA)n Simple_repeat Simple_repeat 2 43 0 2 1131 486 244 88 10 chr3 71678263 71678454 -87921329 + L1MA6 LINE L1 6057 6264 -39 2 1131 532 293 55 21 chr3 71678596 71678898 -87920885 + L1MC4a LINE L1 6285 6606 -1436 2 1131 8276 170 46 78 chr3 71678916 71679801 -87919982 + L1_Mus4 LINE L1 401 1272 -5814 2 1131 4092 157 50 3 chr3 71679801 71680498 -87919285 + Lx2 LINE L1 6268 6997 0 2 1131 8276 132 104 64 chr3 71680498 71680749 -87919034 + L1_Mus4 LINE L1 1273 1500 -4377 2 1131 4053 68 2 2 chr3 71680749 71681279 -87918504 + L1Md_F2 LINE L1 6053 6582 0 2 1131 8276 132 104 64 chr3 71681279 71681891 -87917892 + L1_Mus4 LINE L1 1501 2056 -3821 2 1131 405 0 0 0 chr3 71681891 71681936 -87917847 + (CA)n Simple_repeat Simple_repeat 2 46 0 2 1131 8276 136 35 22 chr3 71681936 71684871 -87914912 + L1_Mus4 LINE L1 2057 6636 0 2 1131 10898 152 114 15 chr3 71684950 71687182 -87912601 + L1_Mur2 LINE L1 3292 5743 -134 2 1131 321 163 46 11 chr3 71687180 71687267 -87912516 + Lx4A LINE L1 6967 7056 -2 2 1131 258 56 0 0 chr3 71687267 71687303 -87912480 + (TTAA)n Simple_repeat Simple_repeat 3 38 0 2 1131 36 0 0 0 chr3 71687467 71687503 -87912280 + AT_rich Low_complexity Low_complexity 1 36 0 2 1131 212 376 80 0 chr3 71687820 71687945 -87911838 + B1F SINE Alu 10 144 -5 2 1131 360 0 0 0 chr3 71688616 71688656 -87911127 + (CA)n Simple_repeat Simple_repeat 1 40 0 2 1131 944 9 9 0 chr3 71689961 71690074 -87909709 + (TCTA)n Simple_repeat Simple_repeat 1 114 0 2 1131 1301 75 6 0 chr3 71690159 71690333 -87909450 + L1_Mus1 LINE L1 6392 6566 -1 2 1131 3361 75 23 23 chr3 71690856 71691336 -87908447 - L1Md_F2 LINE L1 -3 6579 6100 2 1131 691 205 33 17 chr3 71691862 71692014 -87907769 + ORR1C2 LTR MaLR 191 360 -24 2 1131 237 220 0 0 chr3 71692185 71692235 -87907548 + (CA)n Simple_repeat Simple_repeat 1 50 0 2 1131 1916 209 42 0 chr3 71692256 71692633 -87907150 + MTC LTR MaLR 11 403 -18 2 1131 620 170 7 0 chr3 71692633 71692768 -87907015 + (TA)n Simple_repeat Simple_repeat 1 136 0 2 1131 365 129 14 0 chr3 71693298 71693368 -87906415 + (TAGA)n Simple_repeat Simple_repeat 3 73 0 2 1131 959 319 23 39 chr3 71694462 71694761 -87905022 + Lx9 LINE L1 6981 7276 -368 2 1131 4608 66 24 6 chr3 71694761 71695388 -87904395 + L1Md_F3 LINE L1 5944 6581 -3 2 1131 959 319 23 39 chr3 71695388 71695600 -87904183 + Lx9 LINE L1 7277 7484 -160 2 1131 39 22 0 0 chr3 71695686 71695732 -87904051 + AT_rich Low_complexity Low_complexity 1 46 0 2 1131 37 39 0 0 chr3 71695830 71695881 -87903902 + AT_rich Low_complexity Low_complexity 1 51 0 2 1132 28 71 0 0 chr3 71697262 71697318 -87902465 + AT_rich Low_complexity Low_complexity 1 56 0 2 1132 358 300 66 44 chr3 71697953 71698089 -87901694 - ID_B1 SINE B4 -5 219 81 2 1132 2801 86 12 19 chr3 71698280 71698705 -87901078 + L1_Mus3 LINE L1 6211 6632 -6 2 1132 503 300 74 43 chr3 71699753 71700011 -87899772 - Lx8 LINE L1 -129 7344 7079 2 1132 308 339 18 12 chr3 71700034 71700204 -87899579 + L1_Mur3 LINE L1 5382 5552 -328 2 1132 364 287 62 7 chr3 71700308 71700452 -87899331 - L1_Mur3 LINE L1 -665 5215 5064 2 1132 1305 73 5 90 chr3 71701178 71701389 -87898394 - L1_Mus2 LINE L1 0 6566 6374 2 1132 216 268 0 0 chr3 71701447 71701503 -87898280 - PB1D10 SINE Alu -24 93 38 2 1132 250 403 88 0 chr3 71702076 71702257 -87897526 - LTR41 LTR ERVL -531 237 41 2 1132 348 313 67 18 chr3 71702621 71703008 -87896775 - L1M4 LINE L1 -2996 3150 2745 2 1132 25 31 0 0 chr3 71703266 71703298 -87896485 + AT_rich Low_complexity Low_complexity 1 32 0 2 1132 1647 133 83 14 chr3 71705337 71705626 -87894157 + Lx3A LINE L1 6673 6981 0 2 1132 26 0 0 0 chr3 71705886 71705912 -87893871 + AT_rich Low_complexity Low_complexity 1 26 0 2 1132 6415 60 1 0 chr3 71706180 71706998 -87892785 - L1Md_F2 LINE L1 0 6582 5764 2 1132 543 70 14 0 chr3 71707077 71707148 -87892635 - tRNA-Pro-CCY tRNA tRNA -2 73 2 3 1132 29 0 0 0 chr3 71707159 71707188 -87892595 + AT_rich Low_complexity Low_complexity 1 29 0 3 1132 25 31 0 0 chr3 71708252 71708284 -87891499 + AT_rich Low_complexity Low_complexity 1 32 0 3 1132 1190 309 48 29 chr3 71709180 71709764 -87890019 - Lx9 LINE L1 -193 7451 6857 3 1132 663 294 37 34 chr3 71709831 71710186 -87889597 - L1_Rod LINE L1 -606 5241 4886 3 1132 198 0 0 0 chr3 71712690 71712712 -87887071 + (CAAA)n Simple_repeat Simple_repeat 1 22 0 3 1132 558 128 0 0 chr3 71714147 71714264 -87885519 + (A)n Simple_repeat Simple_repeat 1 117 0 3 1132 405 359 27 14 chr3 71714266 71714413 -87885370 + B3 SINE B2 57 205 -11 3 1132 509 310 14 7 chr3 71714470 71714613 -87885170 - B3 SINE B2 -68 148 5 3 1132 1310 235 113 7 chr3 71714637 71714856 -87884927 + Lx9 LINE L1 7175 7425 -219 3 1132 351 65 0 0 chr3 71714856 71714902 -87884881 + (TATG)n Simple_repeat Simple_repeat 3 48 0 3 1132 1310 235 113 7 chr3 71714902 71714985 -87884798 + Lx9 LINE L1 7426 7515 -129 3 1132 366 23 0 0 chr3 71714985 71715028 -87884755 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 1132 1310 235 113 7 chr3 71715028 71715149 -87884634 + Lx9 LINE L1 7516 7643 -1 3 1132 1986 200 85 18 chr3 71715149 71715643 -87884140 + Lx5 LINE L1 5615 6141 -909 3 1132 264 111 0 0 chr3 71715846 71715891 -87883892 + (TTG)n Simple_repeat Simple_repeat 1 45 0 3 1132 910 126 0 0 chr3 71715891 71716026 -87883757 - B1_Mus1 SINE Alu -13 135 1 3 1132 398 314 116 55 chr3 71716943 71717236 -87882547 + RMER13A LTR ERVK 183 493 -367 3 1132 25 0 0 0 chr3 71717440 71717465 -87882318 + AT_rich Low_complexity Low_complexity 1 25 0 3 1132 964 76 0 7 chr3 71717469 71717614 -87882169 - L1_Mus2 LINE L1 -1 6565 6422 3 1132 333 283 39 8 chr3 71717922 71718050 -87881733 - RCHARR1 DNA MER1_type 0 974 843 3 1132 35 78 0 0 chr3 71718057 71718134 -87881649 + AT_rich Low_complexity Low_complexity 1 77 0 3 1132 4721 104 27 8 chr3 71718496 71719201 -87880582 + Lx3_Mus LINE L1 6274 6991 -18 3 1132 1086 102 0 0 chr3 71719224 71719371 -87880412 + B1_Mus2 SINE Alu 1 147 0 3 1132 818 68 17 0 chr3 71719383 71719500 -87880283 + (GAAAA)n Simple_repeat Simple_repeat 2 120 0 3 1132 372 22 0 0 chr3 71720349 71720394 -87879389 + (TC)n Simple_repeat Simple_repeat 2 46 0 3 1132 556 86 0 0 chr3 71720394 71720475 -87879308 - B1_Mus2 SINE Alu -1 146 66 3 1132 334 303 67 56 chr3 71720824 71721093 -87878690 - L1MA6 LINE L1 -295 6005 5734 3 1132 228 35 0 0 chr3 71721457 71721486 -87878297 + (TTG)n Simple_repeat Simple_repeat 2 30 0 3 1132 342 206 0 0 chr3 71721923 71721991 -87877792 + tRNA-Lys-AAG tRNA tRNA 9 76 0 3 1132 1242 304 32 9 chr3 71721993 71722338 -87877445 - RMER13B LTR ERVK 0 908 556 3 1132 649 264 0 0 chr3 71722940 71723080 -87876703 + B1_Mur2 SINE Alu 10 149 0 3 1132 369 131 0 0 chr3 71724511 71724572 -87875211 + (GA)n Simple_repeat Simple_repeat 1 61 0 3 1132 35 71 0 0 chr3 71725042 71725112 -87874671 + AT_rich Low_complexity Low_complexity 1 70 0 3 1132 2949 164 14 50 chr3 71725618 71726184 -87873599 + Lx3A LINE L1 6424 6969 -12 3 1132 324 0 0 0 chr3 71726184 71726220 -87873563 + (TAAA)n Simple_repeat Simple_repeat 2 37 0 3 1132 21 0 0 0 chr3 71726775 71726796 -87872987 + AT_rich Low_complexity Low_complexity 1 21 0 3 1132 6001 134 86 10 chr3 71727453 71728528 -87871255 - Lx2 LINE L1 -1 6996 5841 3 1132 21 0 0 0 chr3 71729096 71729117 -87870666 + AT_rich Low_complexity Low_complexity 1 21 0 3 1132 22 35 0 0 chr3 71731384 71731413 -87868370 + AT_rich Low_complexity Low_complexity 1 29 0 3 1132 307 132 14 14 chr3 71732128 71732197 -87867586 + (TA)n Simple_repeat Simple_repeat 1 69 0 3 1132 24 0 0 0 chr3 71734053 71734077 -87865706 + AT_rich Low_complexity Low_complexity 1 24 0 3 1132 650 333 39 52 chr3 71734104 71734672 -87865111 - Lx7 LINE L1 -447 7026 6448 3 1132 791 311 31 62 chr3 71734732 71735153 -87864630 - Lx8 LINE L1 -5 7468 7061 3 1132 383 225 0 0 chr3 71735225 71735314 -87864469 + ORR1D1 LTR MaLR 31 119 -255 3 1132 462 36 0 0 chr3 71735314 71735370 -87864413 + (TC)n Simple_repeat Simple_repeat 2 57 0 3 1132 450 0 0 0 chr3 71735370 71735419 -87864364 + (TG)n Simple_repeat Simple_repeat 1 50 0 3 1132 277 313 0 32 chr3 71735419 71735530 -87864253 + ORR1D1 LTR MaLR 167 267 -100 3 1132 3283 284 88 22 chr3 71735538 71735622 -87864161 + ORR1D1-int LTR MaLR 5 87 -1283 3 1132 369 0 0 0 chr3 71735622 71735663 -87864120 + (TA)n Simple_repeat Simple_repeat 2 42 0 3 1132 3283 284 88 22 chr3 71735663 71736800 -87862983 + ORR1D1-int LTR MaLR 88 1306 -64 3 1132 347 260 13 0 chr3 71736800 71736877 -87862906 + ORR1D1 LTR MaLR 56 133 -241 3 1132 3337 175 28 14 chr3 71736875 71737593 -87862190 - ORR1A4-int LTR MaLR -516 1447 720 3 1132 1156 185 85 60 chr3 71737554 71737802 -87861981 - MT2B LTR ERVL -314 287 34 3 1132 3345 189 70 47 chr3 71737621 71738409 -87861374 - ORR1A4-int LTR MaLR -1157 806 1 3 1132 1594 169 40 61 chr3 71738413 71738741 -87861042 - ORR1A4 LTR MaLR -8 321 1 3 1132 306 232 0 0 chr3 71738880 71738949 -87860834 + Lx6 LINE L1 7388 7456 -4 3 1132 222 37 0 0 chr3 71739100 71739127 -87860656 + (TG)n Simple_repeat Simple_repeat 1 27 0 3 1132 960 123 14 0 chr3 71739365 71739511 -87860272 + B1_Mus1 SINE Alu 1 148 0 3 1132 306 231 0 0 chr3 71740097 71740175 -87859608 - Lx7 LINE L1 0 7696 7619 3 1132 243 293 204 31 chr3 71740485 71740647 -87859136 + RMER15 LTR ERVL 336 525 -50 3 1132 5418 98 16 5 chr3 71741005 71741816 -87857967 - L1Md_F2 LINE L1 0 6582 5763 3 1132 1762 40 4 4 chr3 71741816 71742042 -87857741 + L1_Mm LINE L1 5249 5474 -409 3 1132 1062 98 0 0 chr3 71742182 71742335 -87857448 + (CTTTG)n Simple_repeat Simple_repeat 3 155 0 3 1132 1099 176 168 287 chr3 71745475 71746027 -87853756 + RMER6A LTR ERVK 6 455 -301 3 1132 5813 50 3 4 chr3 71746027 71746763 -87853020 + L1Md_F2 LINE L1 5836 6570 -12 3 1132 1099 183 19 18 chr3 71746763 71746977 -87852806 + RMER6A LTR ERVK 456 687 -3 3 1132 2773 214 23 18 chr3 71746980 71747584 -87852199 + RMER6-int LTR ERVK 1 607 -2570 3 1132 7922 139 25 47 chr3 71747584 71748054 -87851729 + L1_Mur2 LINE L1 1556 2029 -3848 3 1132 306 50 0 0 chr3 71748054 71748094 -87851689 + (CAAAA)n Simple_repeat Simple_repeat 5 44 0 3 1132 7922 214 36 101 chr3 71748094 71750013 -87849770 + L1_Mur2 LINE L1 2028 3844 -2039 3 1132 1074 115 0 12 chr3 71750013 71750180 -87849603 + B2_Mm2 SINE B2 2 166 -29 3 1132 7922 214 36 101 chr3 71750180 71751097 -87848686 + L1_Mur2 LINE L1 3845 4714 -1169 3 1132 3418 110 27 195 chr3 71751097 71752070 -87847713 - RMER17D2 LTR ERVK 0 809 1 3 1132 7155 256 43 132 chr3 71752070 71752190 -87847593 + L1_Mm LINE L1 4715 4830 -1053 3 1132 636 107 10 10 chr3 71752190 71752294 -87847489 + Lx4A LINE L1 5712 5815 -1243 3 1132 500 208 57 0 chr3 71752296 71752402 -87847381 - RLTR25B LTR ERVK -5 1098 987 3 1132 483 18 0 0 chr3 71752426 71752482 -87847301 + (TC)n Simple_repeat Simple_repeat 2 57 0 3 1132 3524 212 46 51 chr3 71752648 71753512 -87846271 - RLTR25B LTR ERVK -166 862 3 3 1132 601 103 23 0 chr3 71753512 71753599 -87846184 + Lx4A LINE L1 5831 5919 -1139 3 1132 3551 183 20 3 chr3 71753692 71754355 -87845428 + RMER6-int LTR ERVK 600 1273 -1904 3 1132 471 87 0 0 chr3 71754361 71754430 -87845353 + (TGG)n Simple_repeat Simple_repeat 3 71 0 3 1132 540 274 76 41 chr3 71754442 71754613 -87845170 - B3A SINE B2 -16 182 6 3 1132 34 55 0 0 chr3 71754792 71754847 -87844936 + AT_rich Low_complexity Low_complexity 1 55 0 3 1132 1239 144 0 5 chr3 71754915 71755131 -87844652 - Lx LINE L1 -1 6653 6439 3 1132 308 216 69 49 chr3 71755165 71755267 -87844516 - Lx9 LINE L1 -9 7635 7532 3 1132 5014 264 37 68 chr3 71755271 71755439 -87844344 - Lx7 LINE L1 0 7696 7537 3 1132 203 0 37 0 chr3 71755439 71755466 -87844317 + (CTATA)n Simple_repeat Simple_repeat 2 29 0 3 1132 5014 264 37 68 chr3 71755466 71757001 -87842782 - Lx7 LINE L1 -160 7536 6045 3 1132 2259 191 18 12 chr3 71757003 71757500 -87842283 - L1_Mur3 LINE L1 -1343 4537 4038 3 1132 22 0 0 0 chr3 71757601 71757623 -87842160 + AT_rich Low_complexity Low_complexity 1 22 0 3 1132 29 0 0 0 chr3 71757945 71757974 -87841809 + AT_rich Low_complexity Low_complexity 1 29 0 3 1132 1100 259 91 117 chr3 71758570 71759152 -87840631 - RLTR20D LTR ERVK 0 568 2 3 1132 631 289 6 24 chr3 71759371 71759541 -87840242 + B4 SINE B4 11 177 -115 3 1132 418 256 0 113 chr3 71760165 71760315 -87839468 + B1F2 SINE Alu 17 149 0 3 1132 216 0 0 0 chr3 71760453 71760477 -87839306 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 3 1132 1528 171 4 0 chr3 71760636 71760917 -87838866 + L1_Mur2 LINE L1 3989 4270 -1607 3 1132 1108 50 0 0 chr3 71760909 71761048 -87838735 + L1Md_F2 LINE L1 6355 6493 -89 3 1132 1031 154 10 5 chr3 71761048 71761244 -87838539 + Lx LINE L1 6450 6646 -8 3 1132 339 128 20 131 chr3 71762205 71762304 -87837479 - BGLII LTR ERVK -2 419 332 3 1132 26 30 0 0 chr3 71762979 71763012 -87836771 + AT_rich Low_complexity Low_complexity 1 33 0 3 1132 28 29 0 0 chr3 71764221 71764256 -87835527 + AT_rich Low_complexity Low_complexity 1 35 0 3 1132 272 261 73 43 chr3 71764610 71764774 -87835009 - Lx7 LINE L1 0 7696 7528 3 1132 474 96 0 0 chr3 71764802 71764875 -87834908 + (CA)n Simple_repeat Simple_repeat 2 74 0 3 1132 45 0 0 0 chr3 71765296 71765341 -87834442 + AT_rich Low_complexity Low_complexity 1 45 0 3 1132 22 35 0 0 chr3 71765454 71765483 -87834300 + AT_rich Low_complexity Low_complexity 1 29 0 3 1132 255 61 0 0 chr3 71765615 71765648 -87834135 + (TTTTC)n Simple_repeat Simple_repeat 3 35 0 3 1132 904 287 22 16 chr3 71766155 71766474 -87833309 - RLTR33 LTR ERVK -85 593 188 3 1132 842 327 115 27 chr3 71766809 71767218 -87832565 + Lx8 LINE L1 6373 6817 -656 3 1132 664 118 69 191 chr3 71767220 71767408 -87832375 + RMER6C LTR ERVK 1 165 -525 3 1132 378 229 0 86 chr3 71767478 71767583 -87832200 + RMER6C LTR ERVK 491 586 -104 3 1132 3815 197 24 15 chr3 71767583 71768393 -87831390 + Lx2B LINE L1 6183 6999 -1 3 1132 1617 290 84 7 chr3 71768394 71768686 -87831097 + Lx9 LINE L1 6813 7125 -519 3 1132 324 0 0 0 chr3 71768686 71768722 -87831061 + (TG)n Simple_repeat Simple_repeat 1 36 0 3 1132 1617 290 84 7 chr3 71768722 71769123 -87830660 + Lx9 LINE L1 7126 7558 -86 3 1132 370 336 19 0 chr3 71769192 71769299 -87830484 - ID_B1 SINE B4 -115 109 1 3 1132 27 0 0 0 chr3 71769302 71769329 -87830454 + AT_rich Low_complexity Low_complexity 1 27 0 4 1132 940 179 68 40 chr3 71769409 71769769 -87830014 - RMER6A LTR ERVK 0 720 475 4 1132 296 266 21 0 chr3 71769794 71769888 -87829895 + (AACTG)n Simple_repeat Simple_repeat 1 96 0 4 1132 846 152 49 25 chr3 71769906 71770068 -87829715 - RMER6A LTR ERVK -524 166 1 4 1132 21 36 0 0 chr3 71771336 71771364 -87828419 + AT_rich Low_complexity Low_complexity 1 28 0 4 1132 30 0 0 0 chr3 71771409 71771439 -87828344 + AT_rich Low_complexity Low_complexity 1 30 0 4 1132 21 0 0 0 chr3 71771619 71771640 -87828143 + AT_rich Low_complexity Low_complexity 1 21 0 4 1132 26 74 0 0 chr3 71772309 71772363 -87827420 + AT_rich Low_complexity Low_complexity 1 54 0 4 1132 4104 21 0 0 chr3 71772551 71773025 -87826758 - L1Md_T LINE L1 -32 5851 5378 4 1132 5468 35 0 0 chr3 71773025 71773677 -87826106 + L1Md_T LINE L1 5931 6582 0 4 1132 245 27 0 0 chr3 71773722 71773759 -87826024 + L1Md_T LINE L1 6545 6581 -1 4 1132 22 0 0 0 chr3 71773759 71773781 -87826002 + AT_rich Low_complexity Low_complexity 1 22 0 4 1132 277 364 0 0 chr3 71773833 71773943 -87825840 - L1MC LINE L1 -741 5592 5483 4 1132 588 294 14 7 chr3 71773957 71774104 -87825679 + B3 SINE B2 1 148 -68 4 1132 273 218 56 56 chr3 71774113 71774220 -87825563 - L1MC LINE L1 -872 5472 5366 4 1132 424 352 105 13 chr3 71774251 71774490 -87825293 - B4 SINE B4 -22 270 10 4 1132 1923 123 54 3 chr3 71774778 71775112 -87824671 - Lx3_Mus LINE L1 -8 7001 6651 4 1132 1164 88 0 17 chr3 71775202 71775376 -87824407 - MTA_Mm LTR MaLR -220 176 6 4 1132 555 192 30 15 chr3 71775581 71775713 -87824070 - L1_Mur3 LINE L1 -7049 663 530 4 1132 574 304 70 39 chr3 71775926 71776210 -87823573 + RMER10A LTR ERVL 125 417 -25 4 1132 737 290 118 61 chr3 71776410 71776773 -87823010 + ORR1C2 LTR MaLR 1 384 0 4 1132 370 211 0 0 chr3 71776788 71776864 -87822919 + ORR1C2-int LTR MaLR 15 90 -1280 4 1132 2119 88 20 67 chr3 71776872 71777215 -87822568 - IAPLTR2b LTR ERVK 0 327 1 4 1132 6007 49 4 12 chr3 71777217 71777967 -87821816 - IAPEz-int LTR ERVK -2 6479 5736 4 1132 2165 75 0 0 chr3 71777966 71778244 -87821539 - IAPEz-int LTR ERVK -4845 1636 1359 4 1132 3374 66 20 36 chr3 71778244 71778987 -87820796 - IAPEz-int LTR ERVK -5819 662 9 4 1132 2195 78 20 67 chr3 71778988 71779331 -87820452 - IAPLTR2b LTR ERVK 0 327 1 4 1132 238 297 62 0 chr3 71779631 71779695 -87820088 - L1MCa LINE L1 -6286 222 155 4 1132 27 29 0 0 chr3 71780361 71780395 -87819388 + AT_rich Low_complexity Low_complexity 1 34 0 4 1132 422 249 19 11 chr3 71780886 71781005 -87818778 - B3A SINE B2 -70 123 2 4 1132 254 283 0 0 chr3 71781142 71781202 -87818581 + RSINE1 SINE B4 44 103 -62 4 1132 37 62 0 0 chr3 71781965 71782030 -87817753 + AT_rich Low_complexity Low_complexity 1 65 0 4 1132 217 213 33 0 chr3 71782183 71782244 -87817539 + (TA)n Simple_repeat Simple_repeat 1 63 0 4 1132 23 0 0 0 chr3 71783034 71783057 -87816726 + AT_rich Low_complexity Low_complexity 1 23 0 4 1132 450 0 0 0 chr3 71783094 71783144 -87816639 + (TTTA)n Simple_repeat Simple_repeat 3 52 0 4 1132 21 0 0 0 chr3 71783404 71783425 -87816358 + AT_rich Low_complexity Low_complexity 1 21 0 4 1132 241 229 0 0 chr3 71783529 71783577 -87816206 + CT-rich Low_complexity Low_complexity 1 48 0 4 1132 4881 145 35 0 chr3 71784036 71784852 -87814931 + Lx3A LINE L1 6130 6974 -7 4 1132 1310 87 38 0 chr3 71785173 71785357 -87814426 - B2_Mm2 SINE B2 -3 192 2 4 1132 450 0 0 0 chr3 71785511 71785561 -87814222 + (TTTA)n Simple_repeat Simple_repeat 3 52 0 4 1132 3440 281 122 16 chr3 71785562 71786797 -87812986 - Lx6 LINE L1 -19 7441 6077 4 1132 284 289 50 50 chr3 71786872 71787032 -87812751 + L1M3e LINE L1 1914 2073 -4964 4 1132 82 0 0 0 chr3 71787530 71787612 -87812171 + AT_rich Low_complexity Low_complexity 1 82 0 4 1132 23 33 0 0 chr3 71787669 71787699 -87812084 + AT_rich Low_complexity Low_complexity 1 30 0 4 1132 3281 230 23 69 chr3 71788253 71789320 -87810463 - L1_Mur3 LINE L1 -3008 2872 1855 4 1132 1525 318 68 99 chr3 71789318 71789342 -87810441 + Lx5 LINE L1 5862 5885 -1165 4 1132 2172 222 68 29 chr3 71789342 71789930 -87809853 - RMER19C LTR ERVK 0 611 1 4 1132 1525 318 68 99 chr3 71789930 71791036 -87808747 + Lx5 LINE L1 5886 6957 -93 4 1132 432 276 32 0 chr3 71791366 71791522 -87808261 - Lx9 LINE L1 -1 7643 7483 4 1132 180 127 36 18 chr3 71791542 71791598 -87808185 + (TA)n Simple_repeat Simple_repeat 1 57 0 4 1132 660 251 14 33 chr3 71791598 71791812 -87807971 - Lx9 LINE L1 -132 7512 7303 4 1132 281 333 101 7 chr3 71791852 71792000 -87807783 - RSINE1 SINE B4 0 165 4 4 1132 956 176 0 49 chr3 71792264 71792467 -87807316 - B2_Mm2 SINE B2 -1 194 2 4 1132 1672 31 0 0 chr3 71793476 71793669 -87806114 + B2_Mm1a SINE B2 1 193 0 4 1132 2282 85 2 3 chr3 71794461 71794788 -87804995 - L1_Mm LINE L1 -1453 4693 4341 4 1132 5303 66 1 16 chr3 71794788 71795498 -87804285 + L1Md_F2 LINE L1 5866 6565 -17 4 1132 207 0 0 0 chr3 71796160 71796183 -87803600 + (TA)n Simple_repeat Simple_repeat 2 24 0 4 1132 228 189 40 164 chr3 71796243 71796395 -87803388 + Lx9 LINE L1 7478 7610 -34 4 1132 291 28 0 0 chr3 71796723 71796759 -87803024 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 4 1132 734 209 7 0 chr3 71797545 71797684 -87802099 + B1_Mus1 SINE Alu 9 148 0 4 1132 1140 194 68 89 chr3 71797723 71798124 -87801659 - RMER16 LTR ERVK 0 533 1 4 1132 1525 270 38 73 chr3 71798124 71798730 -87801053 - Lx7 LINE L1 -449 7247 6663 4 1132 3834 129 26 11 chr3 71798727 71799339 -87800444 + L1_Mm LINE L1 5206 5826 -57 4 1132 1477 236 42 84 chr3 71799332 71799693 -87800090 - Lx7 LINE L1 -1045 6651 6302 4 1132 441 0 0 0 chr3 71799693 71799742 -87800041 + (CA)n Simple_repeat Simple_repeat 2 50 0 4 1132 1477 236 42 84 chr3 71799742 71799856 -87799927 - Lx7 LINE L1 -1395 6301 6196 4 1132 2621 234 48 17 chr3 71799885 71800807 -87798976 - Lx7 LINE L1 -1613 6083 5131 4 1132 331 155 14 0 chr3 71800811 71800882 -87798901 - L1_Mur3 LINE L1 -4359 1521 1450 4 1132 1422 33 0 0 chr3 71801799 71801979 -87797804 + (GAA)n Simple_repeat Simple_repeat 1 180 0 4 1132 2116 278 72 45 chr3 71802260 71803001 -87796782 - Lx6 LINE L1 -666 6794 6034 4 1132 477 0 0 0 chr3 71803040 71803093 -87796690 + (TC)n Simple_repeat Simple_repeat 2 54 0 4 1132 297 0 0 0 chr3 71803097 71803130 -87796653 + (CA)n Simple_repeat Simple_repeat 2 34 0 4 1132 3062 219 74 16 chr3 71803148 71803984 -87795799 - Lx6 LINE L1 -26 5854 4970 4 1132 1130 214 42 52 chr3 71803965 71804271 -87795512 - L1_Mur3 LINE L1 -6928 800 498 4 1132 243 0 0 0 chr3 71804668 71804695 -87795088 + (TTCA)n Simple_repeat Simple_repeat 2 28 0 4 1132 21 0 0 0 chr3 71804985 71805006 -87794777 + AT_rich Low_complexity Low_complexity 1 21 0 4 1132 543 200 21 0 chr3 71805187 71805282 -87794501 - B1_Mus2 SINE Alu -1 146 50 4 1132 3156 227 40 5 chr3 71805288 71806044 -87793739 - ORR1B1-int LTR MaLR 0 1509 728 4 1132 1678 203 63 0 chr3 71806204 71806553 -87793230 - RMER1B Other Other -11 1055 685 4 1132 266 273 0 0 chr3 71806550 71806605 -87793178 + RMER1A Other Other 382 436 -594 4 1132 3904 134 7 0 chr3 71806699 71807294 -87792489 - Lx2 LINE L1 -275 6722 6124 4 1132 363 106 0 0 chr3 71807306 71807372 -87792411 + (GA)n Simple_repeat Simple_repeat 2 67 0 4 1132 742 313 9 0 chr3 71807635 71807852 -87791931 + ID_B1 SINE B4 1 219 -5 4 1132 186 43 0 0 chr3 71807953 71807976 -87791807 + (ATG)n Simple_repeat Simple_repeat 2 24 0 4 1132 687 216 0 0 chr3 71808177 71808311 -87791472 - Lx4B LINE L1 -833 6225 6092 4 1132 1609 194 6 3 chr3 71808313 71808624 -87791159 + Lx4B LINE L1 6741 7052 -6 4 1132 242 221 141 13 chr3 71809379 71809457 -87790326 + ID_B1 SINE B4 137 224 0 4 1132 27 29 0 0 chr3 71809738 71809772 -87790011 + AT_rich Low_complexity Low_complexity 1 34 0 4 1132 992 296 14 10 chr3 71810023 71810313 -87789470 + MTD LTR MaLR 1 291 -128 4 1132 2023 167 162 40 chr3 71810338 71810843 -87788940 - RMER2 LTR ERV1 0 567 1 4 1132 359 271 68 0 chr3 71811169 71811287 -87788496 - MMAR1 DNA Mariner 0 1286 1161 4 1132 202 244 0 0 chr3 71811308 71811353 -87788430 + (TAAA)n Simple_repeat Simple_repeat 2 46 0 4 1132 1180 123 16 21 chr3 71811491 71811682 -87788101 + B2_Mm2 SINE B2 3 192 -3 4 1132 1940 99 0 0 chr3 71811729 71811991 -87787792 + L1_Mus2 LINE L1 6063 6324 -242 4 1132 673 267 122 14 chr3 71811993 71812432 -87787351 - MMAR1 DNA Mariner -769 517 1 4 1132 35 63 0 0 chr3 71812818 71812881 -87786902 + AT_rich Low_complexity Low_complexity 1 63 0 4 1132 369 0 0 0 chr3 71813212 71813253 -87786530 + (TG)n Simple_repeat Simple_repeat 2 42 0 4 1132 298 0 23 23 chr3 71813254 71813297 -87786486 + (TTTTG)n Simple_repeat Simple_repeat 2 44 0 4 1132 1140 61 0 7 chr3 71813315 71813464 -87786319 - B1_Mus1 SINE Alu 0 148 1 4 1132 22 56 0 0 chr3 71813708 71813744 -87786039 + AT_rich Low_complexity Low_complexity 1 36 0 4 1132 247 293 0 57 chr3 71813914 71814019 -87785764 - Charlie24 DNA MER1_type -387 2063 1965 4 1132 3726 233 40 18 chr3 71814407 71815343 -87784440 - Lx3C LINE L1 -2 6974 6019 4 1132 326 98 20 0 chr3 71815341 71815392 -87784391 - Lx3C LINE L1 -1134 5842 5791 4 1132 290 210 0 51 chr3 71815602 71815677 -87784106 + ORR1D1 LTR MaLR 303 374 0 4 1132 453 347 82 0 chr3 71815735 71815980 -87783803 - Lx8 LINE L1 -323 7150 6886 4 1132 546 16 0 0 chr3 71816056 71816119 -87783664 + (CA)n Simple_repeat Simple_repeat 2 64 0 4 1132 909 239 88 44 chr3 71816119 71816423 -87783360 - MT2A LTR ERVL -213 320 1 4 1132 995 333 85 11 chr3 71816446 71817020 -87782763 - Lx8 LINE L1 -636 6837 6221 4 1132 192 77 0 0 chr3 71817671 71817697 -87782086 + (TG)n Simple_repeat Simple_repeat 2 27 0 4 1132 410 79 16 0 chr3 71817697 71817760 -87782023 + (TAG)n Simple_repeat Simple_repeat 3 66 0 4 1132 381 22 0 0 chr3 71817956 71818002 -87781781 + (CA)n Simple_repeat Simple_repeat 1 46 0 4 1132 5772 35 0 0 chr3 71819060 71819743 -87780040 - L1Md_T LINE L1 0 6582 5900 4 1132 1085 203 31 4 chr3 71820559 71820787 -87778996 + Lx7 LINE L1 6727 6960 -736 4 1132 234 0 0 0 chr3 71820825 71820851 -87778932 + (TG)n Simple_repeat Simple_repeat 1 26 0 4 1132 567 0 0 0 chr3 71820853 71820916 -87778867 + (GA)n Simple_repeat Simple_repeat 1 63 0 4 1132 318 170 94 21 chr3 71820916 71821012 -87778771 + Lx7 LINE L1 7401 7503 -193 4 1132 320 213 116 68 chr3 71820976 71821122 -87778661 - Lx6 LINE L1 0 7460 7308 4 1132 552 325 47 6 chr3 71821305 71821475 -87778308 - MTE2b LTR MaLR -201 178 2 4 1132 22 56 0 0 chr3 71821584 71821620 -87778163 + AT_rich Low_complexity Low_complexity 1 36 0 4 1132 21 0 0 0 chr3 71821819 71821840 -87777943 + AT_rich Low_complexity Low_complexity 1 21 0 5 1132 1154 28 0 0 chr3 71822425 71822566 -87777217 - L1Md_F3 LINE L1 -775 5809 5669 5 1132 743 90 25 0 chr3 71822566 71822688 -87777095 + L1Md_F3 LINE L1 6457 6581 -3 5 1132 270 0 0 0 chr3 71822702 71822732 -87777051 + (CAA)n Simple_repeat Simple_repeat 1 30 0 5 1132 247 314 80 0 chr3 71823396 71823533 -87776250 + MER3 DNA MER1_type 41 188 -21 5 1132 280 361 67 8 chr3 71824121 71824241 -87775542 + B4A SINE B4 2 128 -164 5 1132 564 185 0 1 chr3 71825078 71825190 -87774593 + Lx3C LINE L1 6270 6380 -620 5 1132 228 35 0 0 chr3 71825385 71825414 -87774369 + (GA)n Simple_repeat Simple_repeat 2 30 0 5 1132 3276 65 2 7 chr3 71826494 71826926 -87772857 - L1_Mus1 LINE L1 0 6567 6138 5 1132 419 36 0 0 chr3 71826926 71826981 -87772802 + L1_Mus1 LINE L1 6080 6134 -433 5 1132 2421 181 11 7 chr3 71826981 71827425 -87772358 - Lx2 LINE L1 -5 6992 6547 5 1133 25 31 0 0 chr3 71828153 71828185 -87771598 + AT_rich Low_complexity Low_complexity 1 32 0 5 1133 291 54 0 0 chr3 71828187 71828224 -87771559 + (TA)n Simple_repeat Simple_repeat 1 37 0 5 1133 201 182 0 0 chr3 71828479 71828512 -87771271 + (TA)n Simple_repeat Simple_repeat 2 34 0 5 1133 358 58 19 0 chr3 71829093 71829145 -87770638 + L1Md_Gf LINE L1 263 315 -6412 5 1133 1590 109 0 0 chr3 71829141 71829388 -87770395 + L1Md_Gf LINE L1 896 1142 -5380 5 1133 15294 9 0 0 chr3 71831998 71833738 -87766045 + L1Md_A LINE L1 3847 5586 -297 5 1133 8837 10 0 0 chr3 71833738 71834734 -87765049 + L1Md_A LINE L1 5587 6582 0 5 1133 285 318 62 30 chr3 71834745 71835048 -87764735 - L1MA4 LINE L1 -382 5918 5606 5 1133 26 50 0 0 chr3 71835072 71835112 -87764671 + AT_rich Low_complexity Low_complexity 1 40 0 5 1133 969 283 45 15 chr3 71835348 71835678 -87764105 + Lx7 LINE L1 7077 7416 -280 5 1133 4714 122 10 72 chr3 71836643 71837904 -87761879 + Lx3A LINE L1 5120 6293 -688 5 1133 5028 170 32 4 chr3 71838340 71839302 -87760481 - L1_Mur2 LINE L1 -1596 4281 3293 5 1133 4546 237 57 19 chr3 71839298 71840815 -87758968 + Lx5 LINE L1 5436 7051 -7 5 1133 21 82 0 0 chr3 71840943 71840992 -87758791 + AT_rich Low_complexity Low_complexity 1 49 0 5 1133 281 289 40 0 chr3 71841446 71841522 -87758261 + B4A SINE B4 208 286 -6 5 1133 324 250 65 0 chr3 71841780 71841872 -87757911 - ORR1C2-int LTR MaLR -1271 99 2 5 1133 786 257 90 5 chr3 71841874 71842085 -87757698 - ORR1C2 LTR MaLR -13 371 143 5 1133 237 321 80 25 chr3 71842354 71842517 -87757266 + Lx7 LINE L1 7180 7351 -345 5 1133 246 155 52 0 chr3 71843673 71843731 -87756052 + (TA)n Simple_repeat Simple_repeat 2 62 0 5 1133 255 157 0 0 chr3 71843757 71843808 -87755975 + (TATG)n Simple_repeat Simple_repeat 2 52 0 5 1133 206 167 0 36 chr3 71844062 71844118 -87755665 + CT-rich Low_complexity Low_complexity 1 54 0 5 1133 696 24 0 0 chr3 71844244 71844326 -87755457 + (GAAA)n Simple_repeat Simple_repeat 2 83 0 5 1133 2353 120 16 0 chr3 71844742 71845269 -87754514 - L1VL4 LINE L1 -2439 1120 585 5 1133 262 67 63 51 chr3 71845272 71845351 -87754432 + T-rich Low_complexity Low_complexity 4 83 0 5 1133 1081 75 7 0 chr3 71845361 71845507 -87754276 - B1_Mus2 SINE Alu 0 147 1 5 1133 714 170 7 103 chr3 71845507 71845685 -87754098 - L1VL4 LINE L1 -5705 597 450 5 1133 2338 106 0 3 chr3 71845688 71846011 -87753772 + Lx2 LINE L1 6357 6678 -319 5 1133 4214 138 7 17 chr3 71846008 71846889 -87752894 - Lx LINE L1 -416 6238 5363 5 1133 924 129 27 0 chr3 71846905 71847052 -87752731 + B2_Mm2 SINE B2 1 151 -44 5 1133 21 36 0 0 chr3 71847994 71848022 -87751761 + AT_rich Low_complexity Low_complexity 1 28 0 5 1133 368 399 69 9 chr3 71848865 71849146 -87750637 + MLT1E3 LTR MaLR 352 650 -3 5 1133 432 0 0 0 chr3 71849159 71849207 -87750576 + (TG)n Simple_repeat Simple_repeat 2 49 0 5 1133 222 209 13 107 chr3 71849219 71849294 -87750489 + B1_Mur4 SINE Alu 1 68 -82 5 1133 2140 198 157 59 chr3 71849294 71849918 -87749865 + RMER6C LTR ERVK 4 688 -2 5 1133 605 325 40 94 chr3 71849934 71850308 -87749475 + MT2A LTR ERVL 180 533 0 5 1133 183 42 0 0 chr3 71850889 71850913 -87748870 + (TAAAAA)n Simple_repeat Simple_repeat 6 29 0 5 1133 306 298 202 53 chr3 71851178 71851515 -87748268 + Tigger6a DNA MER2_type 101 487 -596 5 1133 850 296 89 10 chr3 71851565 71851734 -87748049 + Lx6 LINE L1 6560 6737 -723 5 1133 234 91 0 0 chr3 71851734 71851767 -87748016 + (CAA)n Simple_repeat Simple_repeat 1 33 0 5 1133 850 302 80 11 chr3 71851767 71851909 -87747874 + Lx6 LINE L1 6738 6906 -790 5 1133 198 208 0 0 chr3 71852413 71852461 -87747322 + (TA)n Simple_repeat Simple_repeat 2 49 0 5 1133 1077 361 69 17 chr3 71852635 71853407 -87746376 - Lx9 LINE L1 -405 7239 6428 5 1133 3882 126 69 11 chr3 71854588 71855256 -87744527 - Lx3A LINE L1 -3 6978 6272 5 1133 4510 30 4 0 chr3 71855255 71855791 -87743992 + L1Md_F2 LINE L1 6045 6582 0 5 1133 2831 109 30 32 chr3 71855791 71856266 -87743517 - Lx3_Mus LINE L1 -714 6295 5822 5 1133 3108 259 87 37 chr3 71856263 71856375 -87743408 - Lx9 LINE L1 -36 7608 7480 5 1133 507 17 0 0 chr3 71856375 71856435 -87743348 + (CA)n Simple_repeat Simple_repeat 1 60 0 5 1133 3108 259 87 37 chr3 71856435 71857324 -87742459 - Lx9 LINE L1 -165 7479 6557 5 1133 580 236 60 106 chr3 71857318 71857649 -87742134 - L1_Rod LINE L1 -2099 3748 3433 5 1133 674 235 34 34 chr3 71857656 71857832 -87741951 - MLT1K LTR MaLR -61 534 359 5 1133 365 355 116 54 chr3 71857881 71858140 -87741643 - MLT1K LTR MaLR -307 288 14 5 1133 1435 255 34 107 chr3 71858694 71859454 -87740329 - L1_Rod LINE L1 -2402 3445 2741 5 1133 378 0 0 0 chr3 71859454 71859496 -87740287 + (TG)n Simple_repeat Simple_repeat 1 42 0 5 1133 293 205 60 12 chr3 71859496 71859580 -87740203 - L1_Rod LINE L1 -3841 2006 1919 5 1133 651 311 23 35 chr3 71859667 71859977 -87739806 - L1_Rod LINE L1 -6846 326 21 5 1133 24 67 0 0 chr3 71860399 71860444 -87739339 + AT_rich Low_complexity Low_complexity 1 45 0 5 1133 463 277 40 69 chr3 71860475 71860491 -87739292 + ORR1A4 LTR MaLR 162 177 -193 5 1133 2004 100 7 3 chr3 71860491 71860792 -87738991 - L1_Mus4 LINE L1 -4 6632 6331 5 1133 1235 128 1 2 chr3 71860792 71860983 -87738800 + ORR1A4 LTR MaLR 136 357 -13 5 1133 1125 274 98 56 chr3 71861279 71861831 -87737952 - Lx9 LINE L1 -1 7643 7069 5 1133 1049 319 17 23 chr3 71862231 71862577 -87737206 + MTE2b LTR MaLR 23 366 -13 5 1133 495 0 0 0 chr3 71862737 71862792 -87736991 + (TA)n Simple_repeat Simple_repeat 1 55 0 5 1133 672 129 0 0 chr3 71864279 71864403 -87735380 + (TG)n Simple_repeat Simple_repeat 2 125 0 5 1133 354 382 69 47 chr3 71864424 71864699 -87735084 - B4 SINE B4 0 292 12 5 1133 408 207 254 9 chr3 71866115 71866342 -87733441 + Lx7 LINE L1 6929 7212 -484 5 1133 332 183 49 0 chr3 71866344 71866426 -87733357 + Lx6 LINE L1 7373 7458 -2 5 1133 462 152 0 0 chr3 71866441 71866533 -87733250 + GA-rich Low_complexity Low_complexity 1 92 0 5 1133 541 194 65 37 chr3 71866715 71866897 -87732886 - RMER6A LTR ERVK -188 502 325 5 1133 487 157 0 0 chr3 71866975 71867058 -87732725 - MT2B LTR ERVL -338 263 181 5 1133 251 208 167 0 chr3 71866998 71867070 -87732713 - PB1D9 SINE Alu -35 85 2 5 1133 246 154 0 0 chr3 71867070 71867107 -87732676 - RMER6A LTR ERVK -683 37 1 5 1133 381 22 0 0 chr3 71867113 71867159 -87732624 + (TAGA)n Simple_repeat Simple_repeat 1 46 0 5 1133 641 195 0 24 chr3 71868401 71868569 -87731214 - Lx3A LINE L1 -3 6978 6815 5 1133 21 0 0 0 chr3 71869365 71869386 -87730397 + AT_rich Low_complexity Low_complexity 1 21 0 5 1133 461 104 0 13 chr3 71869500 71869578 -87730205 + (TA)n Simple_repeat Simple_repeat 2 78 0 5 1133 2679 320 50 51 chr3 71869614 71871027 -87728756 + Lx7 LINE L1 6083 7494 -202 5 1133 534 338 104 34 chr3 71871145 71871586 -87728197 + Lx8 LINE L1 7002 7473 0 5 1133 676 240 15 40 chr3 71871794 71872089 -87727694 + Lx4B LINE L1 6665 7051 -7 5 1133 257 218 0 0 chr3 71872207 71872262 -87727521 + (CA)n Simple_repeat Simple_repeat 2 56 0 5 1133 232 298 47 23 chr3 71872262 71872348 -87727435 + MLT-int LTR MaLR 1 88 -1647 5 1133 270 0 0 0 chr3 71872529 71872559 -87727224 + (TTTTA)n Simple_repeat Simple_repeat 5 34 0 5 1133 249 77 0 0 chr3 71872562 71872601 -87727182 - L1Md_F2 LINE L1 -16 6566 6528 5 1133 21 0 0 0 chr3 71872626 71872647 -87727136 + AT_rich Low_complexity Low_complexity 1 21 0 5 1133 1112 372 92 52 chr3 71872672 71873797 -87725986 + MLT-int LTR MaLR 151 1320 -415 5 1133 484 351 77 36 chr3 71873823 71874071 -87725712 + MLT-int LTR MaLR 1416 1673 -62 5 1133 546 43 0 0 chr3 71874442 71874511 -87725272 + (CATA)n Simple_repeat Simple_repeat 2 70 0 5 1133 402 86 12 24 chr3 71874511 71874594 -87725189 + (GA)n Simple_repeat Simple_repeat 1 82 0 5 1133 599 52 0 30 chr3 71874609 71874708 -87725075 + L1Md_F2 LINE L1 6475 6570 -12 5 1133 2607 220 91 5 chr3 71877098 71877693 -87722090 - Lx6 LINE L1 -434 7026 6381 5 1133 197 222 16 0 chr3 71877773 71877836 -87721947 + (TA)n Simple_repeat Simple_repeat 1 64 0 5 1133 239 262 16 0 chr3 71878137 71878198 -87721585 - B1_Mus2 SINE Alu -63 84 23 5 1133 261 0 21 64 chr3 71879746 71879793 -87719990 + (TTTTTG)n Simple_repeat Simple_repeat 4 48 0 5 1133 2417 117 47 10 chr3 71880695 71881102 -87718681 - BGLII_Mus LTR ERVK 0 422 1 5 1133 2748 262 42 79 chr3 71881666 71882598 -87717185 - Lx6 LINE L1 -176 7284 6388 5 1133 251 262 0 0 chr3 71882749 71882810 -87716973 + MLT1E1A LTR MaLR 617 677 -3 5 1133 329 82 33 0 chr3 71883050 71883111 -87716672 + (CAGA)n Simple_repeat Simple_repeat 2 64 0 5 1133 360 279 30 12 chr3 71883298 71883465 -87716318 + (TCTA)n Simple_repeat Simple_repeat 4 173 0 5 1133 245 301 15 8 chr3 71883405 71883539 -87716244 + (TA)n Simple_repeat Simple_repeat 1 135 0 5 1133 256 363 24 24 chr3 71883546 71883673 -87716110 - ID_B1 SINE B4 -13 211 85 5 1133 3572 129 35 88 chr3 71884773 71885566 -87714217 + RMER17A LTR ERVK 1 751 0 5 1133 14552 100 51 16 chr3 71886308 71891668 -87708115 - L1Md_F2 LINE L1 0 6582 511 5 1133 2308 226 75 51 chr3 71891760 71892347 -87707436 - RMER20B LTR ERVK -23 604 4 5 1133 268 370 37 0 chr3 71892727 71892835 -87706948 - ORR1E LTR MaLR -235 124 13 5 1133 3656 163 18 6 chr3 71893341 71893965 -87705818 + Lx4A LINE L1 6428 7058 0 6 1133 5112 106 1 15 chr3 71894515 71895846 -87703937 + L1Md_F3 LINE L1 624 1930 -3953 6 1133 2851 55 0 0 chr3 71895844 71896188 -87703595 - L1Md_F2 LINE L1 -155 6427 6084 6 1133 16732 78 34 16 chr3 71896188 71897271 -87702512 + L1Md_F3 LINE L1 2966 4029 -1854 6 1133 2603 81 31 17 chr3 71897271 71897623 -87702160 - IAPEY2_LTR LTR ERVK 0 357 1 6 1133 16732 78 34 16 chr3 71897623 71898957 -87700826 + L1Md_F3 LINE L1 4030 5425 -458 6 1133 6155 65 98 2 chr3 71898957 71899803 -87699980 + L1Md_F3 LINE L1 5658 6584 0 6 1133 180 0 0 0 chr3 71899836 71899856 -87699927 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 6 1133 23 33 0 0 chr3 71900172 71900202 -87699581 + AT_rich Low_complexity Low_complexity 1 30 0 6 1133 1805 197 18 25 chr3 71900314 71900715 -87699068 - RMER10B LTR ERVL 0 398 1 6 1133 406 317 148 106 chr3 71900762 71901119 -87698664 - MTEb LTR MaLR -7 372 1 6 1133 25876 125 28 54 chr3 71901610 71908043 -87691740 + L1_Mus3 LINE L1 217 6469 -169 6 1133 25 51 0 0 chr3 71910476 71910515 -87689268 + AT_rich Low_complexity Low_complexity 1 39 0 6 1133 24 0 0 0 chr3 71910631 71910655 -87689128 + AT_rich Low_complexity Low_complexity 1 24 0 6 1133 233 260 0 64 chr3 71911114 71911192 -87688591 + B4A SINE B4 3 75 -217 6 1133 205 178 0 0 chr3 71911202 71911247 -87688536 + A-rich Low_complexity Low_complexity 1 45 0 6 1133 387 0 0 0 chr3 71911261 71911304 -87688479 + (CAA)n Simple_repeat Simple_repeat 3 45 0 6 1133 375 305 83 8 chr3 71911308 71911440 -87688343 + B4A SINE B4 92 233 -59 6 1133 288 30 0 0 chr3 71911440 71911473 -87688310 - L1_Mus1 LINE L1 -391 6176 6144 6 1133 3368 60 16 0 chr3 71911473 71911906 -87687877 + L1_Mus1 LINE L1 6124 6563 -4 6 1133 453 36 0 0 chr3 71912000 71912055 -87687728 + (GA)n Simple_repeat Simple_repeat 2 56 0 6 1133 306 206 0 0 chr3 71912116 71912189 -87687594 + (TATG)n Simple_repeat Simple_repeat 3 75 0 6 1133 21 0 0 0 chr3 71912285 71912306 -87687477 + AT_rich Low_complexity Low_complexity 1 21 0 6 1133 509 67 44 11 chr3 71912609 71912700 -87687083 + L1Md_F3 LINE L1 6491 6584 0 6 1133 776 333 78 3 chr3 71913093 71913388 -87686395 + MTEa LTR MaLR 2 318 -61 6 1133 278 219 39 52 chr3 71913388 71913465 -87686318 + ORR1D2 LTR MaLR 1 76 -294 6 1133 825 258 57 31 chr3 71913688 71914077 -87685706 + RMER15 LTR ERVL 29 549 -26 6 1133 552 127 34 0 chr3 71914430 71914548 -87685235 + (CATA)n Simple_repeat Simple_repeat 2 123 0 6 1133 1835 135 63 171 chr3 71914549 71914648 -87685135 + RLTR23 LTR ERV1 8 99 -331 6 1133 225 83 0 0 chr3 71914648 71914684 -87685099 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 6 1133 1835 135 63 171 chr3 71914684 71915058 -87684725 + RLTR23 LTR ERV1 100 430 0 6 1133 449 332 30 23 chr3 71915264 71915526 -87684257 - Lx8 LINE L1 -360 7113 6850 6 1133 503 160 117 0 chr3 71915592 71915686 -87684097 + L1_Mur2 LINE L1 5153 5257 -620 6 1133 30 77 0 0 chr3 71918004 71918069 -87681714 + AT_rich Low_complexity Low_complexity 1 65 0 6 1133 972 111 21 0 chr3 71919652 71919796 -87679987 - B1_Mus1 SINE Alu 0 148 2 6 1133 268 291 93 62 chr3 71920372 71920566 -87679217 + MER45B DNA Tip100 819 1018 -22 6 1133 262 381 53 12 chr3 71920856 71921026 -87678757 - MIR SINE MIR -27 235 59 6 1133 22 35 0 0 chr3 71921155 71921184 -87678599 + AT_rich Low_complexity Low_complexity 1 29 0 6 1133 436 229 20 48 chr3 71921319 71921466 -87678317 - Lx3C LINE L1 -11 6965 6823 6 1133 2983 69 10 0 chr3 71921475 71921864 -87677919 - L1_Mus1 LINE L1 -379 6188 5796 6 1133 5999 106 54 0 chr3 71921864 71922754 -87677029 + L1_Mus1 LINE L1 4876 5813 -70 6 1133 1995 167 106 5 chr3 71922745 71923178 -87676605 - Lx3B LINE L1 -962 6011 5546 6 1133 303 367 36 48 chr3 71924387 71924553 -87675230 - HAL1-3A_ME LINE L1 -411 2447 2284 6 1133 411 221 0 0 chr3 71924570 71924692 -87675091 + CT-rich Low_complexity Low_complexity 2 123 0 6 1133 25 65 0 0 chr3 71925216 71925262 -87674521 + AT_rich Low_complexity Low_complexity 1 46 0 6 1133 7709 63 3 3 chr3 71925437 71926549 -87673234 - L1Md_F3 LINE L1 -17 6567 5456 6 1133 464 124 11 0 chr3 71926861 71926950 -87672833 + L1Md_F2 LINE L1 6492 6581 -1 6 1133 189 0 0 0 chr3 71927400 71927421 -87672362 + (CAAAT)n Simple_repeat Simple_repeat 4 24 0 6 1133 23 33 0 0 chr3 71927769 71927799 -87671984 + AT_rich Low_complexity Low_complexity 1 30 0 6 1133 2634 190 46 138 chr3 71927875 71928613 -87671170 + RMER6D LTR ERVK 1 670 -50 6 1133 21 0 0 0 chr3 71928631 71928652 -87671131 + AT_rich Low_complexity Low_complexity 1 21 0 6 1133 4787 168 86 18 chr3 71929072 71930016 -87669767 + Lx2 LINE L1 5989 6996 -1 6 1133 232 35 0 0 chr3 71930198 71930227 -87669556 - U6 snRNA snRNA -78 29 1 6 1133 488 105 38 0 chr3 71930816 71930921 -87668862 - Lx3_Mus LINE L1 0 7009 6901 6 1133 4431 118 6 37 chr3 71930921 71931604 -87668179 + Lx3_Mus LINE L1 6241 6902 -107 6 1133 223 211 0 19 chr3 71931696 71931749 -87668034 + CT-rich Low_complexity Low_complexity 1 52 0 6 1133 396 0 0 0 chr3 71932108 71932152 -87667631 + (TA)n Simple_repeat Simple_repeat 2 45 0 6 1133 324 0 0 0 chr3 71932757 71932793 -87666990 + (TG)n Simple_repeat Simple_repeat 2 37 0 6 1133 187 238 0 0 chr3 71933709 71933751 -87666032 + MIR SINE MIR 45 86 -176 6 1133 24 0 0 0 chr3 71933835 71933859 -87665924 + AT_rich Low_complexity Low_complexity 1 24 0 6 1133 405 311 12 127 chr3 71935027 71935200 -87664583 + RSINE1 SINE B4 13 165 0 6 1133 694 228 151 11 chr3 71935621 71935807 -87663976 + URR1A DNA MER1_type 1 212 -14 6 1133 3692 161 15 0 chr3 71936689 71937302 -87662481 + L1VL4 LINE L1 13 634 -5668 6 1133 1881 166 102 10 chr3 71937291 71937675 -87662108 + L1_Mm LINE L1 5300 5718 -165 6 1133 6455 106 32 50 chr3 71937804 71938867 -87660916 - Lx3_Mus LINE L1 -181 6828 5785 6 1133 3081 144 64 34 chr3 71938875 71939778 -87660005 - L1_Mus1 LINE L1 0 6567 5615 6 1133 1266 137 0 23 chr3 71939780 71939997 -87659786 + Lx3_Mus LINE L1 6798 7009 0 6 1133 760 242 148 12 chr3 71940098 71940429 -87659354 - Lx9 LINE L1 -1 7643 7268 6 1133 268 192 0 0 chr3 71940489 71940541 -87659242 - Lx3B LINE L1 -2 6971 6920 6 1133 257 0 30 0 chr3 71940958 71940991 -87658792 + (TAGA)n Simple_repeat Simple_repeat 1 34 0 6 1133 26 0 0 0 chr3 71941151 71941177 -87658606 + AT_rich Low_complexity Low_complexity 1 26 0 6 1133 2746 69 92 0 chr3 71941230 71941609 -87658174 - L1Md_F3 LINE L1 -8 6576 6163 6 1133 1903 250 41 31 chr3 71942150 71942286 -87657497 + Lx7 LINE L1 7083 7215 -481 6 1133 1092 88 0 13 chr3 71942286 71942435 -87657348 + B1_Mm SINE Alu 1 147 0 6 1133 1903 250 41 31 chr3 71942435 71942906 -87656877 + Lx7 LINE L1 7216 7696 0 6 1133 1200 164 9 32 chr3 71942970 71943191 -87656592 - ORR1A2 LTR MaLR -4 323 108 6 1133 31651 84 4 2 chr3 71943191 71948166 -87651617 + L1Md_F2 LINE L1 234 5588 -298 6 1133 7017 64 48 2 chr3 71948167 71949108 -87650675 + L1Md_F2 LINE L1 5590 6573 -12 6 1133 396 239 121 0 chr3 71949108 71949221 -87650562 - ORR1A2 LTR MaLR -194 132 1 6 1133 241 381 23 40 chr3 71949439 71949576 -87650207 + B3 SINE B2 42 179 -37 6 1133 405 70 0 0 chr3 71949576 71949633 -87650150 + (CATA)n Simple_repeat Simple_repeat 1 57 0 6 1133 241 381 23 40 chr3 71949633 71949670 -87650113 + B3 SINE B2 180 213 -3 6 1133 1025 293 73 24 chr3 71949750 71950131 -87649652 - MTC LTR MaLR -21 400 1 6 1133 5036 175 98 8 chr3 71950457 71951435 -87648348 + Lx4A LINE L1 5992 7057 -1 6 1133 400 286 73 29 chr3 71951459 71951704 -87648079 + L1M2 LINE L1 4903 5158 -985 6 1133 30 69 0 0 chr3 71952238 71952296 -87647487 + AT_rich Low_complexity Low_complexity 1 58 0 6 1133 210 229 32 16 chr3 71953120 71953182 -87646601 + (TATATG)n Simple_repeat Simple_repeat 3 65 0 6 141 40925 10 1 6 chr3 71954911 71961522 -87638261 - L1Md_A LINE L1 0 6582 7 6 1134 306 0 0 0 chr3 71961586 71961620 -87638163 + (ATG)n Simple_repeat Simple_repeat 1 34 0 6 1134 285 29 0 0 chr3 71961637 71961671 -87638112 + (GA)n Simple_repeat Simple_repeat 1 34 0 6 1134 639 342 69 102 chr3 71962008 71962229 -87637554 - MTD LTR MaLR -5 414 190 6 1134 1170 68 7 0 chr3 71962229 71962375 -87637408 + B1_Mus2 SINE Alu 1 147 0 6 1134 639 342 69 102 chr3 71962375 71962544 -87637239 - MTD LTR MaLR -230 189 37 6 1134 310 337 75 37 chr3 71962704 71962892 -87636891 - ORR1E LTR MaLR -164 195 1 6 1134 984 293 66 5 chr3 71963120 71963515 -87636268 - MTD LTR MaLR 0 419 1 6 1134 21 0 0 0 chr3 71963656 71963677 -87636106 + AT_rich Low_complexity Low_complexity 1 21 0 6 1134 273 122 0 0 chr3 71963677 71963718 -87636065 - URR1B DNA MER1_type 0 225 185 6 1134 3398 121 68 35 chr3 71963731 71964305 -87635478 - Lx LINE L1 -5 6649 6057 6 1134 993 146 0 61 chr3 71964305 71964585 -87635198 + L1_Mur2 LINE L1 4120 4366 -1520 6 1134 5808 176 29 42 chr3 71964575 71965083 -87634700 + Lx LINE L1 4658 5166 -717 6 1134 1057 103 0 0 chr3 71965083 71965228 -87634555 + B1_Mus1 SINE Alu 1 145 -3 6 1134 5808 176 29 42 chr3 71965228 71965692 -87634091 + Lx LINE L1 5167 5616 -267 6 1134 3065 70 5 0 chr3 71965692 71966090 -87633693 - MTB LTR MaLR 0 400 1 6 1134 5808 112 27 14 chr3 71966090 71966503 -87633280 + Lx LINE L1 5617 6036 -618 6 1134 713 216 66 0 chr3 71966503 71966670 -87633113 - URR1B DNA MER1_type -41 184 7 6 1134 1711 191 6 11 chr3 71966727 71967087 -87632696 - L1_Mur3 LINE L1 -1762 4118 3761 6 1134 2275 208 13 2 chr3 71967096 71967625 -87632158 - L1_Mur3 LINE L1 -2697 3183 2649 6 1134 26 64 0 0 chr3 71967730 71967777 -87632006 + AT_rich Low_complexity Low_complexity 1 47 0 6 1134 203 176 0 0 chr3 71967866 71967900 -87631883 + (CATATA)n Simple_repeat Simple_repeat 2 35 0 6 1134 1423 108 82 4 chr3 71967978 71968210 -87631573 + Lx3_Mus LINE L1 6752 7001 -8 6 1134 21 0 0 0 chr3 71968891 71968912 -87630871 + AT_rich Low_complexity Low_complexity 1 21 0 6 1134 396 302 43 29 chr3 71969801 71969996 -87629787 + B3 SINE B2 1 198 -18 6 1134 510 17 0 0 chr3 71969996 71970055 -87629728 + (GA)n Simple_repeat Simple_repeat 2 60 0 6 1134 396 302 43 29 chr3 71970055 71970067 -87629716 + B3 SINE B2 199 211 -5 6 1134 10287 80 2 1 chr3 71970732 71972865 -87626918 - L1Md_F2 LINE L1 -3 6579 4445 6 1134 1235 249 56 6 chr3 71973098 71973421 -87626362 - ORR1D1 LTR MaLR -28 346 8 6 1134 214 26 51 26 chr3 71973889 71973928 -87625855 + (CAAA)n Simple_repeat Simple_repeat 1 40 0 6 1134 1666 232 35 0 chr3 71974015 71974386 -87625397 - ORR1C2 LTR MaLR 0 384 1 6 1134 1435 246 44 37 chr3 71974386 71974795 -87624988 - ORR1C2-int LTR MaLR 0 1509 1098 6 1134 355 93 0 0 chr3 71974859 71974913 -87624870 - L1Md_F2 LINE L1 -10 6572 6519 7 1134 1890 60 0 0 chr3 71974913 71975145 -87624638 + L1_Mm LINE L1 5520 5751 -132 7 1134 509 364 38 46 chr3 71975581 71975820 -87623963 + B4A SINE B4 5 241 -51 7 1134 595 266 59 54 chr3 71976087 71976290 -87623493 - B3 SINE B2 -1 215 12 7 1134 24 0 0 0 chr3 71976528 71976552 -87623231 + AT_rich Low_complexity Low_complexity 1 24 0 7 1134 839 264 104 39 chr3 71978445 71978825 -87620958 + RMER13A LTR ERVK 67 512 -396 7 1134 519 109 0 21 chr3 71978847 71978941 -87620842 + L1Md_F2 LINE L1 6477 6568 -14 7 1134 189 0 0 0 chr3 71978941 71978962 -87620821 + (GA)n Simple_repeat Simple_repeat 2 22 0 7 1134 288 0 0 0 chr3 71979251 71979283 -87620500 + (CA)n Simple_repeat Simple_repeat 1 32 0 7 1134 315 0 0 0 chr3 71979283 71979317 -87620466 + (GA)n Simple_repeat Simple_repeat 2 36 0 7 1134 295 321 19 0 chr3 71980216 71980322 -87619461 - L1MEf LINE L1 -4572 1628 1521 7 1134 563 314 75 72 chr3 71980389 71980667 -87619116 - MER73 LTR ERVL -2 642 364 7 1134 243 324 0 14 chr3 71982580 71982649 -87617134 + ID2 SINE ID 5 72 -11 7 1134 935 296 63 31 chr3 71982623 71982941 -87616842 - MT2A LTR ERVL -203 330 3 7 1134 419 306 35 0 chr3 71983109 71983253 -87616530 + Lx9 LINE L1 7247 7395 -249 7 1134 451 336 77 45 chr3 71983425 71983646 -87616137 - Charlie12 DNA MER1_type -2645 228 1 7 1134 302 232 0 0 chr3 71983708 71983764 -87616019 + RSINE1 SINE B4 81 136 -29 7 1134 829 280 101 23 chr3 71983908 71984255 -87615528 - RMER13A LTR ERVK -388 472 99 7 1134 806 38 19 0 chr3 71985008 71985113 -87614670 + (GAAA)n Simple_repeat Simple_repeat 3 109 0 7 1134 235 229 177 71 chr3 71985736 71985849 -87613934 - ORR1D2 LTR MaLR -9 361 237 7 1134 1271 165 4 30 chr3 71985902 71986125 -87613658 - MTC LTR MaLR -3 418 201 7 1134 207 0 0 0 chr3 71986125 71986148 -87613635 + (TTA)n Simple_repeat Simple_repeat 2 24 0 7 1134 2707 179 35 37 chr3 71986158 71986731 -87613052 - Lx4B LINE L1 0 7058 6487 7 1134 3295 159 91 2 chr3 71986730 71987354 -87612429 + Lx4B LINE L1 5647 6326 -732 7 1134 904 251 37 32 chr3 71987363 71987700 -87612083 - MTB_Mm LTR MaLR -72 347 2 7 1134 524 320 47 0 chr3 71987701 71987851 -87611932 - MTC LTR MaLR -192 167 11 7 1134 21 0 0 0 chr3 71987999 71988020 -87611763 + AT_rich Low_complexity Low_complexity 1 21 0 7 1134 26 0 0 0 chr3 71988105 71988131 -87611652 + AT_rich Low_complexity Low_complexity 1 26 0 7 1134 484 242 7 22 chr3 71988169 71988304 -87611479 - Lx7 LINE L1 -9 7687 7555 7 1134 1712 92 55 8 chr3 71990118 71990371 -87609412 - L1Md_F2 LINE L1 0 6582 6318 7 1134 450 128 21 11 chr3 71990868 71990963 -87608820 + (TA)n Simple_repeat Simple_repeat 2 97 0 7 1134 1114 228 7 42 chr3 71991027 71991158 -87608625 + Lx2B LINE L1 6705 6835 -165 7 1134 1609 181 16 58 chr3 71991158 71991586 -87608197 - RMER17C LTR ERVK 0 410 1 7 1134 1114 228 7 42 chr3 71991586 71991742 -87608041 + Lx2B LINE L1 6836 6982 -18 7 1134 473 196 0 2 chr3 71991828 71991930 -87607853 + Lx6 LINE L1 4750 4850 -1027 7 1134 235 121 0 0 chr3 71991919 71991952 -87607831 - L1_Mus1 LINE L1 -356 5527 5495 7 1134 7021 90 18 1 chr3 71991953 71993028 -87606755 + L1_Mus1 LINE L1 5477 6566 -1 7 1134 3819 219 70 14 chr3 71993030 71994369 -87605414 + Lx6 LINE L1 4851 6261 -1199 7 1134 1601 309 122 66 chr3 71994385 71995200 -87604583 + Lx6 LINE L1 6527 7386 -74 7 1134 494 86 12 0 chr3 71995227 71995308 -87604475 + (TAGA)n Simple_repeat Simple_repeat 4 85 0 7 1134 714 320 51 64 chr3 71995576 71995950 -87603833 + MTEa LTR MaLR 7 375 -4 7 1134 1379 340 92 44 chr3 71995977 71996630 -87603153 + MTEa-int LTR MaLR 29 726 -854 7 1134 890 214 25 121 chr3 71996630 71996986 -87602797 - RLTRETN_Mm LTR ERVK 0 322 1 7 1134 1379 340 92 44 chr3 71996986 71997102 -87602681 + MTEa-int LTR MaLR 727 835 -745 7 1134 4422 76 33 25 chr3 71997216 71997861 -87601922 + L1Md_F2 LINE L1 5933 6582 0 7 1134 482 290 27 56 chr3 71997861 71998047 -87601736 + ORR1D2 LTR MaLR 142 366 -4 7 1134 555 284 55 25 chr3 71998311 71998513 -87601270 - B3 SINE B2 -6 210 3 7 1134 2757 147 37 2 chr3 71999535 72000000 -87599783 - Lx3A LINE L1 -2 6979 6499 7 1134 6861 125 18 8 chr3 72000016 72001611 -87598172 - Lx3A LINE L1 -594 6456 4838 1 1134 11121 64 14 2 chr3 72001610 72003729 -87596054 - L1Md_F2 LINE L1 -12 6570 4425 2 1134 3621 106 32 0 chr3 72003726 72004283 -87595500 - Lx3A LINE L1 -1033 4853 4279 1 1134 4595 130 65 11 chr3 72004283 72005110 -87594673 + Lx3A LINE L1 3395 4266 -1620 1 1134 22 70 0 0 chr3 72005236 72005279 -87594504 + AT_rich Low_complexity Low_complexity 1 43 0 3 1134 674 304 121 75 chr3 72005289 72005851 -87593932 + Lx9 LINE L1 6885 7472 -172 4 1134 210 37 0 0 chr3 72005856 72005883 -87593900 + (TG)n Simple_repeat Simple_repeat 2 28 0 5 1134 2027 135 3 3 chr3 72006095 72006406 -87593377 + RLTR10E LTR ERVK 1 311 0 6 1134 23 0 0 0 chr3 72006982 72007005 -87592778 + AT_rich Low_complexity Low_complexity 1 23 0 7 1134 359 248 22 7 chr3 72008123 72008261 -87591522 - Lx9 LINE L1 -1 7643 7504 8 1134 23 54 0 0 chr3 72008261 72008298 -87591485 + AT_rich Low_complexity Low_complexity 1 37 0 9 1134 1022 109 0 33 chr3 72008632 72008784 -87590999 - B1_Mus1 SINE Alu 0 148 2 1 1134 7121 61 34 11 chr3 72008795 72009086 -87590697 + L1Md_F2 LINE L1 5600 5891 -691 1 1134 7215 12 9 0 chr3 72009086 72009901 -87589882 + RLTR13B2 LTR ERVK 1 822 0 1 1134 7121 61 34 11 chr3 72009901 72010570 -87589213 + L1Md_F2 LINE L1 5892 6582 0 1 1134 424 317 168 9 chr3 72010919 72011145 -87588638 - MLT-int LTR MaLR -7 1728 1467 1 1134 421 317 14 21 chr3 72011158 72011300 -87588483 + B1F1 SINE Alu 9 149 0 1 1134 203 355 0 25 chr3 72011380 72011461 -87588322 - L2a LINE L2 -47 3379 3301 1 1134 241 319 31 41 chr3 72011531 72011629 -87588154 - MLT-int LTR MaLR -1611 124 28 1 1134 4229 80 0 0 chr3 72012657 72013223 -87586560 - L1_Mus1 LINE L1 -1 6566 6001 1 1134 2709 55 9 0 chr3 72013223 72013568 -87586215 + L1_Mus1 LINE L1 5665 6012 -555 1 1134 203 103 0 49 chr3 72013963 72014004 -87585779 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 1 1134 397 174 10 10 chr3 72014833 72014932 -87584851 + (TA)n Simple_repeat Simple_repeat 2 100 0 1 1134 308 363 6 19 chr3 72015677 72015837 -87583946 - LTR40a LTR ERVL -44 475 318 1 1134 220 271 0 33 chr3 72015897 72015958 -87583825 + (CATA)n Simple_repeat Simple_repeat 2 60 0 2 1134 7011 155 50 5 chr3 72016320 72018428 -87581355 - Lx4A LINE L1 -2 7056 4785 2 1134 28 61 0 0 chr3 72018869 72018918 -87580865 + AT_rich Low_complexity Low_complexity 1 49 0 2 1134 2112 132 33 19 chr3 72018960 72019344 -87580439 + L1_Mus3 LINE L1 6257 6638 0 2 1134 33 43 0 0 chr3 72019387 72019434 -87580349 + AT_rich Low_complexity Low_complexity 1 47 0 2 1134 506 270 153 27 chr3 72020223 72020406 -87579377 + RLTR18 LTR ERVK 3 208 -304 2 1134 695 302 53 24 chr3 72020691 72020898 -87578885 + RLTR18 LTR ERVK 404 616 0 2 1134 206 57 0 54 chr3 72021646 72021683 -87578100 + (CAGAGA)n Simple_repeat Simple_repeat 2 36 0 2 1134 1387 76 16 0 chr3 72021787 72021972 -87577811 - B2_Mm2 SINE B2 -6 189 2 2 1134 441 253 20 46 chr3 72022065 72022218 -87577565 - B1_Mur3 SINE Alu 0 149 1 2 1134 692 69 35 0 chr3 72022227 72022343 -87577440 + (TA)n Simple_repeat Simple_repeat 1 120 0 2 1134 41 36 0 0 chr3 72022343 72022398 -87577385 + AT_rich Low_complexity Low_complexity 1 55 0 3 1134 297 0 0 0 chr3 72022407 72022440 -87577343 + (TA)n Simple_repeat Simple_repeat 1 33 0 3 1134 1385 45 6 0 chr3 72023266 72023443 -87576340 + (TCTCCC)n Simple_repeat Simple_repeat 3 180 0 3 1134 189 0 0 0 chr3 72023443 72023464 -87576319 + (TC)n Simple_repeat Simple_repeat 2 22 0 3 1134 4270 131 52 70 chr3 72023505 72024332 -87575451 - L1_Mus3 LINE L1 -7 6631 5820 3 1134 3186 106 2 2 chr3 72024331 72024793 -87574990 + L1_Mus3 LINE L1 5369 5830 -53 3 1134 356 390 31 12 chr3 72024936 72025097 -87574686 - RSINE1 SINE B4 0 165 2 3 1134 445 289 50 11 chr3 72025138 72025320 -87574463 - Tigger5 DNA MER2_type -46 2360 2172 3 1134 244 361 0 0 chr3 72025323 72025406 -87574377 - Tigger5 DNA MER2_type -2151 255 173 3 1134 607 354 48 0 chr3 72025711 72025920 -87573863 + B4A SINE B4 8 226 -66 3 1134 198 0 0 0 chr3 72025989 72026011 -87573772 + (TATATG)n Simple_repeat Simple_repeat 3 24 0 3 1134 462 18 0 0 chr3 72026045 72026100 -87573683 + (TG)n Simple_repeat Simple_repeat 1 55 0 3 1134 548 308 134 50 chr3 72026103 72026564 -87573219 - Lx9 LINE L1 -228 7416 6917 4 1134 997 95 0 0 chr3 72026567 72026704 -87573079 - L1_Mus3 LINE L1 -335 6303 6167 4 1134 2095 103 6 55 chr3 72026704 72027052 -87572731 + L1_Mus3 LINE L1 6302 6632 -6 4 1134 1497 214 94 12 chr3 72027670 72028010 -87571773 - ORR1C2 LTR MaLR 0 384 17 4 1134 925 73 7 35 chr3 72029197 72029212 -87570571 - B1_Mus1 SINE Alu 0 148 138 4 1134 349 66 0 32 chr3 72029212 72029275 -87570508 + (TTTG)n Simple_repeat Simple_repeat 4 64 0 4 1134 925 73 7 35 chr3 72029275 72029401 -87570382 - B1_Mus1 SINE Alu -11 137 11 4 1134 237 56 0 0 chr3 72029401 72029612 -87570171 - L1_Mus2 LINE L1 0 6566 6525 4 1134 645 211 113 0 chr3 72029639 72029781 -87570002 - MTD LTR MaLR -8 411 254 4 1134 2028 216 77 32 chr3 72029790 72030320 -87569463 + RLTR12A LTR ERVK 3 556 -12 4 1134 414 294 9 9 chr3 72030328 72030438 -87569345 - MTD LTR MaLR -161 258 149 4 1134 326 333 18 6 chr3 72030568 72030737 -87569046 - L1M3 LINE L1 -2263 3877 3707 4 1134 318 50 0 0 chr3 72030860 72030900 -87568883 + (TG)n Simple_repeat Simple_repeat 2 41 0 4 1134 1440 35 6 0 chr3 72031211 72031383 -87568400 + B2_Mm1a SINE B2 2 174 -19 5 1134 23 0 0 0 chr3 72031463 72031486 -87568297 + AT_rich Low_complexity Low_complexity 1 23 0 5 1134 181 330 60 60 chr3 72031563 72031679 -87568104 - MIRc SINE MIR -53 215 100 5 1134 876 350 106 33 chr3 72031740 72032734 -87567049 - Lx8 LINE L1 -148 7325 6246 5 1134 1208 76 16 5 chr3 72033037 72033223 -87566560 - L1_Mus3 LINE L1 -2 6636 6449 5 1134 1079 286 89 40 chr3 72033224 72033596 -87566187 - MTD LTR MaLR -26 393 4 5 1134 23 54 0 0 chr3 72033760 72033797 -87565986 + AT_rich Low_complexity Low_complexity 1 37 0 5 1134 268 233 22 36 chr3 72033812 72033950 -87565833 + (TATAA)n Simple_repeat Simple_repeat 2 137 0 5 1134 1003 194 11 0 chr3 72034913 72035088 -87564695 + Lx LINE L1 6337 6513 -141 5 1134 367 392 19 32 chr3 72035088 72035246 -87564537 + B3A SINE B2 1 156 -42 5 1134 279 0 0 0 chr3 72035253 72035284 -87564499 + (CA)n Simple_repeat Simple_repeat 2 32 0 6 1134 561 88 0 0 chr3 72035291 72035371 -87564412 + (TA)n Simple_repeat Simple_repeat 2 81 0 6 1134 404 264 252 33 chr3 72035477 72035779 -87564004 + RLTR9A LTR ERVK 1 368 0 6 1134 604 319 87 26 chr3 72036637 72036984 -87562799 + Lx8 LINE L1 6119 6486 -987 6 1134 286 161 54 0 chr3 72037035 72037128 -87562655 + CT-rich Low_complexity Low_complexity 1 98 0 6 1134 6694 176 35 10 chr3 72037132 72038574 -87561209 - Lx2B LINE L1 -17 6983 5484 6 1134 1501 113 0 9 chr3 72038570 72038802 -87560981 + Lx2B LINE L1 5265 5494 -392 6 1134 228 365 42 0 chr3 72038890 72038986 -87560797 + Lx8 LINE L1 6556 6655 -818 6 1134 456 337 87 32 chr3 72039284 72039664 -87560119 + Lx8 LINE L1 7034 7434 -39 6 1134 566 259 0 0 chr3 72040119 72040227 -87559556 + RMER6A LTR ERVK 634 741 -15 6 1134 1042 96 0 14 chr3 72041261 72041409 -87558374 + B1_Mm SINE Alu 2 147 0 6 1134 360 0 0 0 chr3 72041576 72041616 -87558167 + (TAGA)n Simple_repeat Simple_repeat 1 40 0 6 1134 4414 129 15 20 chr3 72041618 72042354 -87557429 - Lx LINE L1 -11 6643 5912 6 1134 551 182 8 0 chr3 72042696 72042817 -87556966 + (TA)n Simple_repeat Simple_repeat 1 122 0 7 1134 290 310 91 23 chr3 72042835 72042967 -87556816 + MIR SINE MIR 122 262 0 7 1134 231 305 89 38 chr3 72043882 72044039 -87555744 + MER58B DNA MER1_type 145 309 -32 7 1134 252 122 0 0 chr3 72046020 72046061 -87553722 + (TAGA)n Simple_repeat Simple_repeat 4 44 0 7 1134 1163 262 25 22 chr3 72046127 72046443 -87553340 + MTD LTR MaLR 103 419 0 7 1134 1761 335 40 24 chr3 72046694 72046867 -87552916 - Lx8 LINE L1 -345 7128 6960 7 1134 1304 216 193 55 chr3 72046867 72047473 -87552310 - RMER6C LTR ERVK 0 690 1 7 1134 1761 335 40 24 chr3 72047473 72048083 -87551700 - Lx8 LINE L1 -514 6959 6333 7 1134 34 55 0 0 chr3 72048330 72048385 -87551398 + AT_rich Low_complexity Low_complexity 1 55 0 7 1134 422 354 37 47 chr3 72049173 72049363 -87550420 + B4 SINE B4 9 196 -96 7 1134 226 239 11 64 chr3 72049407 72049501 -87550282 + (CATA)n Simple_repeat Simple_repeat 3 91 0 7 1134 1355 191 8 19 chr3 72050623 72050879 -87548904 + RMER12 LTR ERVK 1 253 -1069 8 1134 770 192 11 102 chr3 72050880 72051066 -87548717 + RMER12 LTR ERVK 722 890 -432 8 1134 459 0 0 0 chr3 72051067 72051118 -87548665 + (TG)n Simple_repeat Simple_repeat 2 52 0 8 1134 276 30 0 0 chr3 72051121 72051154 -87548629 + (CAGAGA)n Simple_repeat Simple_repeat 4 36 0 8 1134 683 209 43 97 chr3 72051163 72051370 -87548413 + RMER12 LTR ERVK 976 1171 -151 8 1134 24 32 0 0 chr3 72051755 72051786 -87547997 + AT_rich Low_complexity Low_complexity 1 31 0 8 1134 1769 166 52 83 chr3 72051993 72052400 -87547383 - ORR1B1 LTR MaLR 0 394 1 8 1134 312 83 0 0 chr3 72052675 72052723 -87547060 + (CA)n Simple_repeat Simple_repeat 1 48 0 8 1134 21 0 0 0 chr3 72052778 72052799 -87546984 + AT_rich Low_complexity Low_complexity 1 21 0 8 1134 22 0 0 0 chr3 72053907 72053929 -87545854 + AT_rich Low_complexity Low_complexity 1 22 0 8 1134 541 225 137 26 chr3 72054095 72054328 -87545455 + Lx9 LINE L1 7370 7628 -16 8 1134 235 291 38 12 chr3 72054373 72054453 -87545330 + B4 SINE B4 203 284 -8 8 1134 2908 122 25 15 chr3 72054662 72055138 -87544645 + Lx LINE L1 6168 6648 -6 9 1134 522 57 0 0 chr3 72056510 72056580 -87543203 + (TA)n Simple_repeat Simple_repeat 2 71 0 9 1134 1094 288 192 0 chr3 72056814 72057199 -87542584 - Lx6 LINE L1 -349 7111 6653 9 1134 1370 215 21 38 chr3 72057204 72057494 -87542289 - ORR1B2 LTR MaLR -9 358 74 9 1134 510 273 40 7 chr3 72057587 72057738 -87542045 - Lx5 LINE L1 -17 7033 6878 9 1134 1029 48 0 0 chr3 72057741 72057888 -87541895 + L1Md_F2 LINE L1 996 1142 -5380 9 1134 27625 84 10 4 chr3 72057878 72061814 -87537969 + L1Md_F2 LINE L1 1632 5588 -298 9 1134 6918 93 8 14 chr3 72061815 72062814 -87536969 + L1Md_F2 LINE L1 5590 6582 -3 9 1134 4701 181 17 25 chr3 72062861 72063822 -87535961 + L1_Mur2 LINE L1 4895 5847 -30 9 1134 1017 270 34 7 chr3 72063817 72064108 -87535675 + Lx5 LINE L1 6741 7039 -11 9 1134 377 236 9 0 chr3 72064398 72064504 -87535279 + CT-rich Low_complexity Low_complexity 3 109 0 9 1134 14686 149 60 7 chr3 72064536 72066009 -87533774 - Lx LINE L1 0 6654 5173 9 1134 919 155 0 7 chr3 72066009 72066020 -87533763 - B1_Mus1 SINE Alu 0 148 138 1 1134 360 0 0 0 chr3 72066020 72066060 -87533723 + (TTG)n Simple_repeat Simple_repeat 2 41 0 1 1134 919 155 0 7 chr3 72066060 72066197 -87533586 - B1_Mus1 SINE Alu -11 137 1 1 1134 14686 192 194 17 chr3 72066197 72067793 -87531990 - Lx LINE L1 -711 5172 3479 9 1134 306 0 0 0 chr3 72067793 72067827 -87531956 + (TG)n Simple_repeat Simple_repeat 2 35 0 1 1134 14686 177 152 19 chr3 72067827 72069817 -87529966 - Lx LINE L1 -2405 3478 893 9 1134 263 303 65 100 chr3 72069817 72070048 -87529735 + RMER10A LTR ERVL 215 437 -5 1 1134 656 321 5 0 chr3 72070118 72070327 -87529456 + B3 SINE B2 3 212 -4 1 1134 4147 99 13 3 chr3 72070849 72071447 -87528336 - L1Md_F2 LINE L1 -450 6550 5604 1 1134 2784 85 18 0 chr3 72071447 72071836 -87527947 + L1_Mus1 LINE L1 6172 6567 0 1 1134 211 28 56 0 chr3 72071851 72071887 -87527896 + (TAAA)n Simple_repeat Simple_repeat 2 39 0 1 1134 22 35 0 0 chr3 72072888 72072917 -87526866 + AT_rich Low_complexity Low_complexity 1 29 0 1 1134 390 42 0 0 chr3 72072991 72073039 -87526744 + (TA)n Simple_repeat Simple_repeat 1 48 0 1 1134 384 328 91 16 chr3 72073354 72073540 -87526243 + B3 SINE B2 2 201 -15 1 1134 223 132 18 36 chr3 72074812 72074867 -87524916 + GA-rich Low_complexity Low_complexity 3 56 0 1 1134 24 0 0 0 chr3 72076326 72076350 -87523433 + AT_rich Low_complexity Low_complexity 1 24 0 1 1134 314 298 44 110 chr3 72076562 72076698 -87523085 - B1F2 SINE Alu 0 149 21 1 1134 396 0 0 0 chr3 72077309 72077353 -87522430 + (TC)n Simple_repeat Simple_repeat 2 45 0 1 1134 633 27 0 0 chr3 72077353 72077427 -87522356 + (TG)n Simple_repeat Simple_repeat 2 76 0 1 1134 39113 33 1 6 chr3 72077500 72083667 -87516116 - L1Md_A LINE L1 0 6582 452 1 1134 656 250 112 42 chr3 72083906 72084165 -87515618 - Lx8 LINE L1 -2 7471 7195 1 1134 292 312 75 55 chr3 72084478 72084732 -87515051 + MamRep1161 DNA TcMar 370 628 -329 1 1134 237 309 121 86 chr3 72084789 72085069 -87514714 - Lx7 LINE L1 -397 7299 7010 1 1134 857 269 52 14 chr3 72085074 72085360 -87514423 + L1_Mur3 LINE L1 3720 4016 -1864 1 1134 49 66 0 0 chr3 72085362 72085453 -87514330 + AT_rich Low_complexity Low_complexity 1 91 0 1 1134 374 296 138 28 chr3 72085650 72086094 -87513689 - L1MA4A LINE L1 -190 5993 5505 1 1134 282 294 20 30 chr3 72086087 72086229 -87513554 - L1_Mur3 LINE L1 -355 5528 5390 1 1134 479 291 10 34 chr3 72086247 72086453 -87513330 + L1M2 LINE L1 5398 5598 -702 1 1134 726 161 0 0 chr3 72086544 72086718 -87513065 + (TATG)n Simple_repeat Simple_repeat 2 175 0 1 1134 732 167 0 0 chr3 72086748 72086892 -87512891 + (CA)n Simple_repeat Simple_repeat 2 145 0 1 1134 235 336 0 46 chr3 72086896 72087005 -87512778 + L1M2 LINE L1 5805 5908 -392 1 1134 374 309 44 59 chr3 72087104 72087307 -87512476 - L1MA4A LINE L1 -1413 4730 4531 1 1134 265 28 28 0 chr3 72087332 72087368 -87512415 + L1_Mur1 LINE L1 2945 2981 -2905 1 1134 432 0 0 0 chr3 72087461 72087509 -87512274 + (TA)n Simple_repeat Simple_repeat 2 49 0 1 1134 353 248 63 50 chr3 72087708 72087929 -87511854 - L1MA4A LINE L1 -1743 4400 4177 1 1134 22 35 0 0 chr3 72087954 72087983 -87511800 + AT_rich Low_complexity Low_complexity 1 29 0 1 1134 35 54 0 0 chr3 72088476 72088532 -87511251 + AT_rich Low_complexity Low_complexity 1 56 0 1 1134 308 333 41 0 chr3 72088768 72088915 -87510868 - Lx7 LINE L1 -414 7282 7130 1 1134 398 312 15 30 chr3 72089108 72089240 -87510543 + RSINE1 SINE B4 3 132 -33 1 1135 2615 142 16 7 chr3 72089911 72090352 -87509431 - Lx LINE L1 0 6654 6210 1 1135 2622 99 0 0 chr3 72090440 72090845 -87508938 + L1Md_F2 LINE L1 1269 1673 -4210 1 1135 38436 7 0 1 chr3 72090846 72096633 -87503150 + L1Md_A LINE L1 1 5586 -297 1 1135 8999 3 0 0 chr3 72096633 72097628 -87502155 + L1Md_A LINE L1 5587 6581 -1 1 1135 27202 89 5 22 chr3 72097631 72101626 -87498157 + L1Md_F2 LINE L1 1660 5586 -297 1 1135 5837 101 96 12 chr3 72101627 72102545 -87497238 + L1Md_F2 LINE L1 5588 6582 0 1 1135 234 273 36 72 chr3 72103108 72103191 -87496592 + RSINE1 SINE B4 84 163 -2 1 1135 26 64 0 0 chr3 72103590 72103637 -87496146 + AT_rich Low_complexity Low_complexity 1 47 0 1 1135 24 91 0 0 chr3 72103817 72103883 -87495900 + AT_rich Low_complexity Low_complexity 1 66 0 1 1135 823 357 110 18 chr3 72104399 72104898 -87494885 - MER54B LTR ERVL -113 680 136 1 1135 303 50 0 0 chr3 72105684 72105724 -87494059 - L1_Mus2 LINE L1 -415 6151 6112 1 1135 2919 82 7 2 chr3 72105724 72106127 -87493656 + L1_Mus2 LINE L1 6150 6554 -12 1 1135 465 338 98 13 chr3 72106172 72106406 -87493377 + Lx8 LINE L1 6938 7191 -282 1 1135 586 285 122 8 chr3 72106650 72106887 -87492896 - Lx8 LINE L1 -258 7215 6952 1 1135 23 0 0 0 chr3 72107287 72107310 -87492473 + AT_rich Low_complexity Low_complexity 1 23 0 1 1135 233 260 0 0 chr3 72107914 72107964 -87491819 + (TG)n Simple_repeat Simple_repeat 1 50 0 1 1135 323 304 116 45 chr3 72108240 72108395 -87491388 - HAL1-3A_ME LINE L1 -39 2819 2654 1 1135 2469 105 37 0 chr3 72110331 72110711 -87489072 + Lx3A LINE L1 4836 5229 -657 1 1135 1948 117 29 10 chr3 72110711 72111021 -87488762 + IAPLTR2b LTR ERVK 1 316 -11 1 1135 8376 119 25 9 chr3 72111029 72112764 -87487019 + Lx3A LINE L1 5219 6971 -10 1 1135 470 332 127 0 chr3 72112877 72113097 -87486686 + Lx8 LINE L1 6993 7240 -233 1 1135 7401 47 1 7 chr3 72113673 72114594 -87485189 - L1Md_F2 LINE L1 0 6582 5667 1 1135 1825 263 101 11 chr3 72114694 72115256 -87484527 + Lx7 LINE L1 6801 7413 -283 1 1135 676 308 45 164 chr3 72115404 72115576 -87484207 - Lx5 LINE L1 -26 7434 7259 1 1135 1083 93 0 0 chr3 72115576 72115715 -87484068 + B1_Mus1 SINE Alu 3 141 -7 1 1135 676 308 45 164 chr3 72115715 72115736 -87484047 - Lx5 LINE L1 -202 7258 7254 1 1135 2961 57 0 18 chr3 72115736 72116126 -87483657 + L1Md_F2 LINE L1 6199 6581 -1 1 1135 741 308 45 160 chr3 72116126 72116401 -87483382 - Lx5 LINE L1 -175 6875 6636 1 1135 438 20 0 0 chr3 72116437 72116488 -87483295 + (TG)n Simple_repeat Simple_repeat 1 51 0 1 1135 30 45 0 0 chr3 72117494 72117538 -87482245 + AT_rich Low_complexity Low_complexity 1 44 0 1 1135 1112 293 28 80 chr3 72118162 72118601 -87481182 + MTD LTR MaLR 1 405 -14 1 1135 23 33 0 0 chr3 72118734 72118764 -87481019 + AT_rich Low_complexity Low_complexity 1 30 0 1 1135 724 286 261 58 chr3 72118919 72119541 -87480242 + Lx9 LINE L1 5365 6113 -1531 1 1135 3421 165 89 1 chr3 72119625 72120297 -87479486 - L1_Mur2 LINE L1 -1502 4375 3645 1 1135 202 330 0 0 chr3 72120360 72120448 -87479335 + (TA)n Simple_repeat Simple_repeat 1 88 0 1 1135 462 254 86 32 chr3 72120536 72120723 -87479060 + Lx9 LINE L1 7269 7465 -179 1 1135 324 412 18 0 chr3 72122217 72122382 -87477401 + RMER15-int LTR ERVL 332 499 -4500 1 1135 2882 155 97 51 chr3 72122471 72122948 -87476835 + RMER6A LTR ERVK 1 504 -252 1 1135 743 0 11 0 chr3 72122948 72123035 -87476748 + (GA)n Simple_repeat Simple_repeat 2 89 0 1 1135 2882 155 97 51 chr3 72123035 72123183 -87476600 + RMER6A LTR ERVK 505 655 -101 1 1135 3637 259 56 48 chr3 72123413 72125444 -87474339 - Lx5 LINE L1 -39 7011 4972 1 1135 1630 183 70 47 chr3 72125441 72125776 -87474007 - Lx5 LINE L1 -1190 4687 4340 1 1135 3378 40 0 0 chr3 72125776 72126172 -87473611 - MTA_Mm LTR MaLR 0 396 1 1 1135 1630 183 70 47 chr3 72126172 72126266 -87473517 - Lx5 LINE L1 -1538 4339 4248 1 1135 1062 142 33 0 chr3 72126363 72126546 -87473237 + B2_Mm1t SINE B2 5 193 0 1 1135 192 152 0 0 chr3 72128884 72128917 -87470866 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 1 1135 1202 234 97 18 chr3 72130148 72130487 -87469296 + ORR1D1 LTR MaLR 1 366 -8 1 1135 381 187 0 0 chr3 72130749 72130824 -87468959 + (TA)n Simple_repeat Simple_repeat 1 75 0 1 1135 22 35 0 0 chr3 72130862 72130891 -87468892 + AT_rich Low_complexity Low_complexity 1 29 0 1 1135 279 0 0 0 chr3 72130920 72130951 -87468832 + (TA)n Simple_repeat Simple_repeat 1 31 0 1 1135 243 406 23 54 chr3 72131474 72131604 -87468179 + MLT1N2 LTR MaLR 127 252 -310 1 1135 338 333 59 0 chr3 72133205 72133340 -87466443 + RSINE1 SINE B4 12 154 -11 1 1135 1466 274 94 20 chr3 72133650 72133889 -87465894 + Lx6 LINE L1 6271 6735 -725 1 1135 340 20 41 0 chr3 72133889 72133938 -87465845 + (CAAAA)n Simple_repeat Simple_repeat 3 53 0 1 1135 1466 308 142 30 chr3 72133938 72134549 -87465234 + Lx6 LINE L1 6736 7430 -30 1 1135 382 165 0 0 chr3 72135142 72135221 -87464562 - L1Md_F2 LINE L1 -2 6580 6502 1 1135 22 0 0 0 chr3 72135221 72135243 -87464540 + AT_rich Low_complexity Low_complexity 1 22 0 1 1135 2258 226 137 27 chr3 72135881 72137065 -87462718 - Lx5 LINE L1 -12 6988 5522 1 1135 2088 164 43 2 chr3 72137123 72137544 -87462239 + L1_Mur2 LINE L1 4239 4676 -1201 1 1135 55 40 0 0 chr3 72137651 72137727 -87462056 + AT_rich Low_complexity Low_complexity 1 76 0 1 1135 450 0 0 0 chr3 72137761 72137811 -87461972 + (TA)n Simple_repeat Simple_repeat 1 50 0 1 1135 435 326 58 21 chr3 72137811 72138052 -87461731 - Lx9 LINE L1 -216 7428 7179 1 1135 4926 63 0 9 chr3 72138497 72139136 -87460647 - L1Md_F2 LINE L1 -13 6569 5937 1 1135 6638 172 57 8 chr3 72139584 72140918 -87458865 - Lx5 LINE L1 -751 5132 3733 1 1135 6698 154 3 2 chr3 72140914 72142450 -87457333 + Lx LINE L1 5110 6648 -6 1 1135 202 273 0 0 chr3 72143112 72143167 -87456616 + (TG)n Simple_repeat Simple_repeat 1 55 0 1 1135 21 71 0 0 chr3 72144052 72144094 -87455689 + AT_rich Low_complexity Low_complexity 1 42 0 1 1135 335 127 0 0 chr3 72144112 72144175 -87455608 - Lx2B LINE L1 0 6997 6935 1 1135 222 37 0 0 chr3 72144193 72144220 -87455563 + (T)n Simple_repeat Simple_repeat 1 27 0 1 1135 1737 190 24 33 chr3 72144407 72144744 -87455039 - Lx2B LINE L1 -92 6908 6575 1 1135 339 91 0 10 chr3 72144747 72144801 -87454982 + Lx3C LINE L1 6547 6595 -405 1 1135 490 382 5 18 chr3 72145518 72145742 -87454041 + B4A SINE B4 42 262 -30 1 1135 301 349 16 16 chr3 72145797 72145925 -87453858 + L1MA6 LINE L1 5299 5426 -747 1 1135 459 269 54 34 chr3 72146215 72146419 -87453364 + L1MA6 LINE L1 5764 5971 -329 1 1135 277 163 0 0 chr3 72146992 72147041 -87452742 - L1_Mur2 LINE L1 -893 4993 4945 1 1135 2639 113 76 6 chr3 72147061 72147608 -87452175 + L1VL4 LINE L1 672 1289 -2270 1 1135 11278 140 47 8 chr3 72147599 72150207 -87449576 + L1_Mus3 LINE L1 3919 6632 -6 1 1135 1239 154 8 68 chr3 72150208 72150458 -87449325 - L1_Mur2 LINE L1 -1263 4614 4380 1 1135 1125 223 24 7 chr3 72150457 72150751 -87449032 + L1_Mur2 LINE L1 4979 5277 -600 1 1135 2650 48 0 9 chr3 72150762 72151102 -87448681 - IAPLTR4 LTR ERVK -8 337 1 1 1135 5682 191 54 3 chr3 72151102 72152187 -87447596 - IAPLTR3-int LTR ERVK -351 7329 5758 1 1135 654 263 50 53 chr3 72152439 72152720 -87447063 - IAPLTR3-int LTR ERVK -797 5745 5466 1 1135 2156 204 11 14 chr3 72153003 72153570 -87446213 - MMERVK10C-int LTR ERVK -1076 5745 5098 1 1135 792 88 35 56 chr3 72153679 72153823 -87445960 - MMERVK10C-int LTR ERVK -2911 4670 4530 1 1135 436 196 23 4 chr3 72153838 72153959 -87445824 - MMERVK10C-int LTR ERVK -2380 2464 2362 1 1135 6692 115 57 6 chr3 72153964 72155344 -87444439 - ETnERV3-int LTR ERVK -3135 4271 2735 1 1135 294 267 0 65 chr3 72155356 72155448 -87444335 - ETnERV3-int LTR ERVK -4867 2539 2454 1 1135 460 220 93 0 chr3 72155459 72155577 -87444206 - ETnERV3-int LTR ERVK -5557 1849 1721 1 1135 1315 197 100 82 chr3 72155578 72156067 -87443716 - ETnERV3-int LTR ERVK -4783 623 251 1 1135 400 119 7 151 chr3 72156179 72156318 -87443465 - IAPLTR3-int LTR ERVK -6629 952 834 2 1135 437 164 9 52 chr3 72156297 72156413 -87443370 - IAPLTR3-int LTR ERVK -5877 944 834 2 1135 482 217 17 34 chr3 72156413 72156532 -87443251 - IAPLTR3-int LTR ERVK -6704 117 1 2 1135 2509 57 9 6 chr3 72156538 72156874 -87442909 - IAPLTR4 LTR ERVK -8 337 1 2 1135 6169 206 39 17 chr3 72156876 72158601 -87441182 + Lx5 LINE L1 5279 7050 0 2 1135 458 346 104 29 chr3 72159910 72160353 -87439430 + L1_Mur3 LINE L1 363 838 -6890 2 1135 1750 248 120 14 chr3 72160697 72161721 -87438062 + L1_Mur3 LINE L1 852 1981 -3899 2 1135 756 226 49 16 chr3 72161697 72161944 -87437839 + L1_Mur3 LINE L1 2560 2814 -3066 2 1135 348 207 23 11 chr3 72161939 72162027 -87437756 + L1_Mur3 LINE L1 4057 4145 -1735 2 1135 5499 222 30 14 chr3 72162050 72163438 -87436345 + L1_Mur3 LINE L1 4208 5617 -263 2 1135 24 32 0 0 chr3 72163476 72163507 -87436276 + AT_rich Low_complexity Low_complexity 1 31 0 2 1135 3734 35 13 0 chr3 72163549 72164009 -87435774 - L1Md_A LINE L1 -1 6581 6116 2 1135 934 163 58 0 chr3 72164829 72165001 -87434782 - B2_Mm1t SINE B2 -10 183 2 2 1135 25 51 0 0 chr3 72165080 72165119 -87434664 + AT_rich Low_complexity Low_complexity 1 39 0 2 1135 2653 76 3 11 chr3 72165329 72165690 -87434093 - L1Md_F2 LINE L1 -13 6569 6212 2 1135 458 401 115 31 chr3 72166053 72166697 -87433086 - MTE-int LTR MaLR -27 1553 856 2 1135 286 261 122 24 chr3 72166851 72167138 -87432645 - L1M2 LINE L1 -1584 5261 4947 2 1135 1301 251 51 13 chr3 72167253 72167564 -87432219 + ORR1B2 LTR MaLR 1 323 -44 2 1135 1006 240 5 5 chr3 72167566 72167784 -87431999 - Lx4B LINE L1 -533 6525 6308 2 1135 784 186 96 62 chr3 72167788 72168114 -87431669 + Lx LINE L1 6283 6653 -1 2 1135 635 276 51 24 chr3 72168384 72168759 -87431024 - L1M2 LINE L1 -4848 2001 1617 2 1135 3650 96 0 0 chr3 72169067 72169558 -87430225 - L1_Mus3 LINE L1 -83 5800 5310 2 1135 6072 93 3 6 chr3 72169560 72170424 -87429359 + L1_Mus3 LINE L1 5776 6637 -1 2 1135 2257 47 11 0 chr3 72171106 72171384 -87428399 + L1Md_F2 LINE L1 6288 6568 -14 2 1135 363 23 0 0 chr3 72172062 72172106 -87427677 + (TG)n Simple_repeat Simple_repeat 2 45 0 2 1135 189 0 0 0 chr3 72173103 72173124 -87426659 + (TG)n Simple_repeat Simple_repeat 2 22 0 2 1135 4664 201 5 31 chr3 72173190 72174207 -87425576 - Lx2B LINE L1 0 7000 6011 2 1135 261 65 36 83 chr3 72174209 72174293 -87425490 + (TTA)n Simple_repeat Simple_repeat 2 81 0 2 1135 580 262 97 55 chr3 72174686 72175045 -87424738 - MTEa LTR MaLR -24 355 47 2 1135 277 307 40 0 chr3 72175020 72175095 -87424688 - ORR1E LTR MaLR -260 99 22 2 1135 4528 200 12 14 chr3 72175172 72176009 -87423774 - L1_Mur2 LINE L1 -304 5573 4732 2 1135 207 0 0 0 chr3 72176009 72176032 -87423751 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2 1135 4528 200 12 14 chr3 72176032 72176134 -87423649 - L1_Mur2 LINE L1 -1146 4731 4636 2 1135 1305 219 26 39 chr3 72176155 72176464 -87423319 + Lx5 LINE L1 6733 7037 -13 2 1135 600 14 0 0 chr3 72176465 72176534 -87423249 + (TAGA)n Simple_repeat Simple_repeat 1 69 0 2 1135 600 181 50 21 chr3 72176543 72176684 -87423099 + ORR1D1-int LTR MaLR 1220 1364 -6 2 1135 764 277 114 26 chr3 72176684 72177025 -87422758 + ORR1D1 LTR MaLR 2 372 -2 2 1135 620 246 80 28 chr3 72177248 72177499 -87422284 - Lx9 LINE L1 -22 7622 7359 2 1135 22 35 0 0 chr3 72177541 72177570 -87422213 + AT_rich Low_complexity Low_complexity 1 29 0 2 1135 184 419 38 61 chr3 72177703 72177835 -87421948 + MIRm SINE MIR 10 138 -138 2 1135 564 116 0 0 chr3 72178809 72178895 -87420888 + (GAAA)n Simple_repeat Simple_repeat 2 87 0 2 1135 247 287 63 84 chr3 72179763 72179858 -87419925 - ORR1B2 LTR MaLR 0 367 275 2 1135 1174 198 60 1 chr3 72180171 72180419 -87419364 - ORR1B2-int LTR MaLR -1104 266 4 2 1135 968 116 20 7 chr3 72180422 72180570 -87419213 - ORR1B2 LTR MaLR 0 367 218 2 1135 24 32 0 0 chr3 72180832 72180863 -87418920 + AT_rich Low_complexity Low_complexity 1 31 0 2 1135 762 293 87 73 chr3 72180954 72181241 -87418542 + ORR1C2 LTR MaLR 2 292 -92 2 1135 2561 231 28 67 chr3 72181246 72181951 -87417832 + ORR1C2-int LTR MaLR 823 1500 -9 2 1135 991 255 140 134 chr3 72181987 72182517 -87417266 - MT2A LTR ERVL 0 533 1 2 1135 273 193 0 50 chr3 72182573 72182633 -87417150 - ORR1A3-int LTR MaLR -1324 639 583 2 1135 510 232 7 44 chr3 72182671 72182806 -87416977 - MERVL_2A-int LTR ERVL -90 5671 5542 2 1135 1578 150 0 0 chr3 72182823 72183076 -87416707 - Lx2 LINE L1 -1 6996 6744 2 1135 283 89 22 0 chr3 72183076 72183121 -87416662 - Lx2 LINE L1 -348 6649 6604 2 1135 1480 257 41 28 chr3 72183121 72183275 -87416508 - MERVL_2A-int LTR ERVL -226 5535 5383 2 1135 2167 94 37 0 chr3 72183275 72183573 -87416210 + RLTR27 LTR ERVK 1 309 0 2 1135 1480 257 41 28 chr3 72183573 72183882 -87415901 - MERVL_2A-int LTR ERVL -379 5382 5066 2 1135 350 293 107 58 chr3 72183922 72184183 -87415600 - Lx9 LINE L1 -298 7346 7073 2 1135 384 292 33 99 chr3 72184316 72184468 -87415315 - Lx8 LINE L1 -164 7309 7168 2 1135 6267 30 8 1 chr3 72184464 72185217 -87414566 + L1Md_F2 LINE L1 4828 5585 -298 2 1135 8157 44 2 0 chr3 72185218 72186211 -87413572 + L1Md_F2 LINE L1 5587 6581 -1 2 1135 200 128 26 0 chr3 72187802 72187841 -87411942 + T-rich Low_complexity Low_complexity 3 42 0 2 1135 205 137 38 38 chr3 72187945 72187998 -87411785 + A-rich Low_complexity Low_complexity 2 54 0 2 1135 594 312 134 16 chr3 72188015 72188328 -87411455 - Lx7 LINE L1 -289 7407 7058 2 1135 211 224 0 0 chr3 72188343 72188392 -87411391 + (TA)n Simple_repeat Simple_repeat 1 49 0 2 1135 1568 167 51 10 chr3 72188656 72188952 -87410831 - ORR1B2 LTR MaLR -59 308 1 2 1135 422 276 16 31 chr3 72189433 72189560 -87410223 + RMER20B LTR ERVK 1 125 -502 2 1135 27 81 0 0 chr3 72190031 72190093 -87409690 + AT_rich Low_complexity Low_complexity 1 62 0 2 1135 1208 206 157 12 chr3 72190262 72190581 -87409202 - ORR1B2 LTR MaLR 0 367 3 2 1135 207 0 0 0 chr3 72190755 72190778 -87409005 + (CCCCCT)n Simple_repeat Simple_repeat 4 26 0 2 1135 448 174 4 0 chr3 72190778 72190876 -87408907 - Lx2B LINE L1 -595 6402 6302 2 1135 1033 156 19 9 chr3 72190889 72191102 -87408681 - Lx2B LINE L1 -757 6243 6029 2 1135 235 114 0 0 chr3 72191217 72191252 -87408531 - Lx2B LINE L1 -980 6017 5983 2 1135 625 349 32 32 chr3 72191273 72191614 -87408169 - MT2A LTR ERVL -108 425 85 2 1135 653 12 0 24 chr3 72191615 72191698 -87408085 + (TTTC)n Simple_repeat Simple_repeat 2 82 0 2 1135 22 35 0 0 chr3 72193077 72193106 -87406677 + AT_rich Low_complexity Low_complexity 1 29 0 2 1135 210 71 0 0 chr3 72193322 72193350 -87406433 + (TG)n Simple_repeat Simple_repeat 1 28 0 2 1135 4516 144 84 6 chr3 72193490 72194275 -87405508 + Lx3B LINE L1 6030 6875 -98 2 1135 21 36 0 0 chr3 72194461 72194489 -87405294 + AT_rich Low_complexity Low_complexity 1 28 0 2 1135 196 30 61 0 chr3 72194955 72194988 -87404795 + (CAA)n Simple_repeat Simple_repeat 2 36 0 2 1135 293 294 123 36 chr3 72195173 72195404 -87404379 - ORR1C2 LTR MaLR -109 261 19 2 1135 454 312 31 37 chr3 72195661 72195824 -87403959 + RSINE1 SINE B4 4 165 0 2 1135 317 238 8 0 chr3 72195835 72195957 -87403826 + (CA)n Simple_repeat Simple_repeat 2 124 0 2 1135 434 18 18 0 chr3 72195964 72196019 -87403764 + (GA)n Simple_repeat Simple_repeat 2 57 0 2 1135 441 0 0 0 chr3 72196107 72196156 -87403627 + (CA)n Simple_repeat Simple_repeat 1 49 0 2 1135 216 97 0 0 chr3 72196252 72196283 -87403500 + (T)n Simple_repeat Simple_repeat 1 31 0 2 1135 207 0 0 0 chr3 72196518 72196541 -87403242 + (A)n Simple_repeat Simple_repeat 1 23 0 2 1135 1015 80 0 0 chr3 72196916 72197054 -87402729 - B1_Mus1 SINE Alu -5 143 6 2 1135 571 183 6 90 chr3 72197054 72197068 -87402715 - ID_B1 SINE B4 -1 219 81 2 1135 320 342 130 6 chr3 72197457 72197619 -87402164 + MTEa LTR MaLR 65 246 -133 2 1135 27 0 0 0 chr3 72197823 72197850 -87401933 + AT_rich Low_complexity Low_complexity 1 27 0 2 1135 3822 154 17 6 chr3 72197858 72198491 -87401292 + Lx2B LINE L1 6356 6995 -5 2 1135 261 0 0 0 chr3 72199305 72199334 -87400449 + (T)n Simple_repeat Simple_repeat 1 29 0 2 1135 261 0 0 0 chr3 72199966 72199995 -87399788 + (GA)n Simple_repeat Simple_repeat 2 30 0 2 1135 24 0 0 0 chr3 72201761 72201785 -87397998 + AT_rich Low_complexity Low_complexity 1 24 0 2 1135 198 71 0 0 chr3 72202102 72202130 -87397653 + (TTTTTG)n Simple_repeat Simple_repeat 3 30 0 2 1135 840 53 8 57 chr3 72202131 72202288 -87397495 - B1_Mus1 SINE Alu 0 150 22 2 1135 414 57 0 0 chr3 72202421 72202474 -87397309 + (TTTTC)n Simple_repeat Simple_repeat 3 55 0 2 1135 673 12 23 0 chr3 72202474 72202560 -87397223 + (TC)n Simple_repeat Simple_repeat 1 88 0 2 1135 564 208 0 0 chr3 72202569 72202670 -87397113 - B1_Mus1 SINE Alu -43 105 5 2 1135 382 274 67 25 chr3 72202670 72202681 -87397102 - B4 SINE B4 -87 161 81 2 1135 276 348 36 29 chr3 72202956 72203095 -87396688 - B4A SINE B4 -152 140 1 2 1135 297 0 0 0 chr3 72204362 72204395 -87395388 + (TTTTG)n Simple_repeat Simple_repeat 3 35 0 2 1135 387 0 0 0 chr3 72204410 72204453 -87395330 + (TG)n Simple_repeat Simple_repeat 2 44 0 2 1135 819 120 0 0 chr3 72204453 72204578 -87395205 - B1_Mus1 SINE Alu -22 126 2 2 1135 23 68 0 0 chr3 72205154 72205198 -87394585 + AT_rich Low_complexity Low_complexity 1 44 0 2 1135 731 237 64 19 chr3 72205230 72205523 -87394260 - L1M2 LINE L1 -1517 4626 4276 2 1135 385 253 40 17 chr3 72205592 72205765 -87394018 + Lx9 LINE L1 7458 7634 -10 2 1135 445 374 49 21 chr3 72205833 72206120 -87393663 - MER77 LTR ERVL 0 607 313 2 1135 1709 363 23 31 chr3 72208150 72209272 -87390511 - Lx8 LINE L1 -197 7276 6164 2 1135 8799 94 59 3 chr3 72209266 72211145 -87388638 + Lx3_Mus LINE L1 5013 7001 -8 2 1135 432 275 102 65 chr3 72211484 72211938 -87387845 + Lx6 LINE L1 5288 5769 -1927 2 1135 912 179 76 0 chr3 72212480 72212664 -87387119 + Lx3C LINE L1 6777 6974 -2 2 1135 712 93 8 87 chr3 72212670 72212924 -87386859 + GA-rich Low_complexity Low_complexity 1 234 0 2 1135 1783 265 138 25 chr3 72212953 72213545 -87386238 - Lx6 LINE L1 -28 7432 6774 2 1135 927 200 18 0 chr3 72213554 72213875 -87385908 + CT-rich Low_complexity Low_complexity 1 326 0 2 1135 898 307 11 4 chr3 72213886 72214154 -87385629 - Lx6 LINE L1 -746 6714 6445 2 1135 507 308 41 0 chr3 72214144 72214290 -87385493 + Lx6 LINE L1 6190 6341 -1119 2 1135 280 347 33 46 chr3 72214395 72214546 -87385237 - Lx8 LINE L1 -199 7274 7126 2 1135 42 57 0 0 chr3 72215653 72215723 -87384060 + AT_rich Low_complexity Low_complexity 1 70 0 2 1135 24 32 0 0 chr3 72215945 72215976 -87383807 + AT_rich Low_complexity Low_complexity 1 31 0 2 1135 1141 111 19 100 chr3 72216945 72217155 -87382628 + B2_Mm2 SINE B2 3 195 0 2 1135 3429 232 27 65 chr3 72217355 72218176 -87381607 + RMER13B LTR ERVK 119 908 0 2 1135 23 68 0 0 chr3 72218367 72218411 -87381372 + AT_rich Low_complexity Low_complexity 1 44 0 2 1135 461 110 12 0 chr3 72218625 72218707 -87381076 + (TG)n Simple_repeat Simple_repeat 2 84 0 2 1135 23 88 0 29 chr3 72219209 72219314 -87380469 + AT_rich Low_complexity Low_complexity 1 102 0 3 141 5670 153 80 45 chr3 72219314 72221212 -87378571 - L1_Mus2 LINE L1 0 6566 4536 3 1136 14567 151 22 36 chr3 72221212 72222396 -87377387 - L1_Mus2 LINE L1 -1777 4106 3003 3 1136 1110 82 0 0 chr3 72222396 72222542 -87377241 - B1_Mus2 SINE Alu -1 146 1 3 1136 14567 158 59 36 chr3 72222542 72224978 -87374805 - L1_Mus2 LINE L1 -2881 3002 423 3 1136 23 33 0 0 chr3 72224996 72225026 -87374757 + AT_rich Low_complexity Low_complexity 1 30 0 3 1136 1234 109 79 10 chr3 72225931 72226134 -87373649 + Lx LINE L1 6431 6647 -7 3 1136 23 0 0 0 chr3 72226605 72226628 -87373155 + AT_rich Low_complexity Low_complexity 1 23 0 3 1136 480 48 0 0 chr3 72227802 72227865 -87371918 + (CA)n Simple_repeat Simple_repeat 1 63 0 3 1136 441 208 0 0 chr3 72228196 72228297 -87371486 - Lx LINE L1 0 6654 6554 3 1136 324 125 0 0 chr3 72228297 72228353 -87371430 + Lx2B LINE L1 6826 6881 -119 3 1136 409 363 35 45 chr3 72228379 72228581 -87371202 - MTEb LTR MaLR -7 372 173 3 1136 1813 223 41 8 chr3 72228677 72229043 -87370740 + MTC LTR MaLR 39 416 -5 3 1136 8292 79 16 0 chr3 72229981 72231112 -87368671 + L1Md_F2 LINE L1 4436 5584 -299 3 1136 6894 108 4 6 chr3 72231114 72232110 -87367673 + L1Md_F2 LINE L1 5587 6580 -2 3 1136 319 308 8 17 chr3 72232256 72232375 -87367408 + (CATATA)n Simple_repeat Simple_repeat 4 121 0 3 1136 333 278 0 0 chr3 72232387 72232538 -87367245 + (CA)n Simple_repeat Simple_repeat 2 152 0 3 1136 62 63 0 0 chr3 72232829 72232940 -87366843 + AT_rich Low_complexity Low_complexity 1 111 0 3 1136 8994 103 25 8 chr3 72233997 72235897 -87363886 - Lx3_Mus LINE L1 -37 6972 5045 3 1136 2162 49 0 0 chr3 72236441 72236706 -87363077 - L1_Mus3 LINE L1 -1 6581 6317 3 1136 4309 96 1 6 chr3 72236725 72237532 -87362251 - L1_Mus3 LINE L1 -579 6059 5255 3 1136 4086 93 3 3 chr3 72237532 72238114 -87361669 + L1_Mus3 LINE L1 6056 6637 -1 3 1136 27 29 0 0 chr3 72238133 72238167 -87361616 + AT_rich Low_complexity Low_complexity 1 34 0 3 1136 465 32 0 0 chr3 72238319 72238381 -87361402 - L1_Mus1 LINE L1 0 6567 6506 3 1136 22 35 0 0 chr3 72238525 72238554 -87361229 + AT_rich Low_complexity Low_complexity 1 29 0 3 1136 518 345 77 16 chr3 72238692 72239004 -87360779 - Lx9 LINE L1 -366 7278 6948 3 1136 692 355 81 3 chr3 72239022 72239406 -87360377 + Lx9 LINE L1 6525 6938 -706 3 1136 3293 186 40 10 chr3 72239539 72240162 -87359621 - RLTR26 LTR ERVK 0 642 1 3 1136 456 321 51 102 chr3 72240262 72240477 -87359306 + B3A SINE B2 1 204 -12 3 1136 27 92 0 0 chr3 72240528 72240604 -87359179 + AT_rich Low_complexity Low_complexity 1 76 0 3 1136 25 0 0 0 chr3 72240728 72240753 -87359030 + AT_rich Low_complexity Low_complexity 1 25 0 3 1136 22 0 0 0 chr3 72241193 72241215 -87358568 + AT_rich Low_complexity Low_complexity 1 22 0 3 1136 22 35 0 0 chr3 72243467 72243496 -87356287 + AT_rich Low_complexity Low_complexity 1 29 0 3 1136 430 356 11 11 chr3 72243966 72244145 -87355638 + Lx8 LINE L1 7160 7338 -135 3 1136 710 240 86 5 chr3 72244549 72244746 -87355037 - B3 SINE B2 0 216 4 3 1136 56 39 0 0 chr3 72244960 72245037 -87354746 + AT_rich Low_complexity Low_complexity 1 77 0 3 1136 1790 204 84 69 chr3 72246367 72247064 -87352719 + RLTR25A LTR ERVK 1 885 -218 3 1136 420 111 0 0 chr3 72247064 72247127 -87352656 + (CA)n Simple_repeat Simple_repeat 2 64 0 3 1136 1790 229 47 60 chr3 72247127 72247356 -87352427 + RLTR25A LTR ERVK 886 1103 0 3 1136 1665 170 27 59 chr3 72247870 72248207 -87351576 - ORR1A3 LTR MaLR 0 326 1 3 1136 368 244 210 0 chr3 72249530 72249649 -87350134 + B1_Mus1 SINE Alu 5 148 0 3 1136 351 155 0 0 chr3 72249661 72249745 -87350038 + (TAA)n Simple_repeat Simple_repeat 2 85 0 3 1136 717 233 3 0 chr3 72249747 72250057 -87349726 + GA-rich Low_complexity Low_complexity 1 311 0 3 1136 268 244 0 12 chr3 72250074 72250157 -87349626 - Lx9 LINE L1 -43 7601 7520 3 1136 661 273 29 0 chr3 72250372 72250577 -87349206 - B3 SINE B2 -1 215 5 3 1136 7414 56 10 5 chr3 72251725 72252902 -87346881 - L1Md_F2 LINE L1 -10 6572 5388 3 1136 482 241 62 85 chr3 72252965 72253224 -87346559 - Lx9 LINE L1 0 7644 7392 3 1136 970 225 16 32 chr3 72253220 72253468 -87346315 + Lx9 LINE L1 6790 7033 -611 3 1136 435 19 0 0 chr3 72253551 72253603 -87346180 + (TG)n Simple_repeat Simple_repeat 1 52 0 3 1136 243 0 0 0 chr3 72255775 72255802 -87343981 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 3 1136 2900 53 0 23 chr3 72256003 72256051 -87343732 - L1Md_F2 LINE L1 -5 6577 6537 3 1136 3247 44 3 0 chr3 72256051 72256435 -87343348 + IAPEY_LTR LTR ERVK 1 385 0 3 1136 2900 53 0 23 chr3 72256435 72256775 -87343008 - L1Md_F2 LINE L1 -46 6536 6198 3 1136 586 259 64 61 chr3 72257024 72257369 -87342414 - Lx7 LINE L1 0 7696 7351 3 1136 808 128 23 0 chr3 72257763 72257935 -87341848 + (TATATG)n Simple_repeat Simple_repeat 2 177 0 3 1136 210 192 19 0 chr3 72258041 72258093 -87341690 + (TA)n Simple_repeat Simple_repeat 2 54 0 3 1136 219 88 0 0 chr3 72258479 72258513 -87341270 + (TTC)n Simple_repeat Simple_repeat 1 34 0 3 1136 2284 136 32 35 chr3 72258514 72258919 -87340864 - Lx LINE L1 -8 6646 6243 3 1136 825 318 34 9 chr3 72259279 72259600 -87340183 + L1M6 LINE L1 619 947 -5549 3 1136 1191 61 0 0 chr3 72260309 72260457 -87339326 + B1_Mus1 SINE Alu 1 148 0 3 1136 270 0 0 0 chr3 72260457 72260487 -87339296 + (A)n Simple_repeat Simple_repeat 1 30 0 3 1136 204 40 0 0 chr3 72262054 72262079 -87337704 + (A)n Simple_repeat Simple_repeat 1 25 0 3 1136 368 343 15 0 chr3 72262737 72262871 -87336912 + Lx9 LINE L1 6412 6547 -1097 3 1136 273 362 11 0 chr3 72262871 72262965 -87336818 - ORR1E LTR MaLR -202 157 63 3 1136 1413 317 100 37 chr3 72263006 72263658 -87336125 - MTE-int LTR MaLR -55 1525 833 3 1136 1347 93 16 0 chr3 72263748 72263930 -87335853 - B2_Mm2 SINE B2 -9 186 2 3 1136 21 0 0 0 chr3 72264048 72264069 -87335714 + AT_rich Low_complexity Low_complexity 1 21 0 3 1136 354 23 0 0 chr3 72264358 72264401 -87335382 + (TA)n Simple_repeat Simple_repeat 1 43 0 3 1136 926 259 115 0 chr3 72264763 72265138 -87334645 - Lx9 LINE L1 -7 7637 7220 3 1136 666 128 436 0 chr3 72266125 72266281 -87333502 + RMER6D LTR ERVK 1 224 -466 3 1136 289 254 0 0 chr3 72266280 72266343 -87333440 + RMER6D LTR ERVK 658 720 0 3 1136 27 29 0 0 chr3 72266793 72266827 -87332956 + AT_rich Low_complexity Low_complexity 1 34 0 3 1136 287 336 22 118 chr3 72266833 72266968 -87332815 - RSINE1 SINE B4 0 165 44 3 1136 656 345 61 19 chr3 72266970 72267448 -87332335 + Lx9 LINE L1 7097 7594 -50 3 1136 255 125 0 0 chr3 72267469 72267509 -87332274 + (TAGA)n Simple_repeat Simple_repeat 4 43 0 3 1136 3505 181 22 6 chr3 72267544 72268211 -87331572 - Lx3B LINE L1 -4 6969 6292 3 1136 697 152 0 0 chr3 72268216 72268341 -87331442 - Lx3B LINE L1 -932 6041 5917 3 1136 270 345 119 80 chr3 72268643 72268955 -87330828 + MLT1E1A LTR MaLR 188 538 -142 3 1136 1019 128 0 0 chr3 72269038 72269186 -87330597 + B1_Mus1 SINE Alu 1 148 0 3 1136 25 51 0 0 chr3 72269380 72269419 -87330364 + AT_rich Low_complexity Low_complexity 1 39 0 3 1136 26 50 0 0 chr3 72269447 72269487 -87330296 + AT_rich Low_complexity Low_complexity 1 40 0 3 1136 21 0 0 0 chr3 72269849 72269870 -87329913 + AT_rich Low_complexity Low_complexity 1 21 0 3 1136 3922 143 44 4 chr3 72270450 72271435 -87328348 + Lx2A LINE L1 5216 6248 -760 3 1136 506 134 27 0 chr3 72271435 72271547 -87328236 + Lx2A LINE L1 6891 7005 -3 3 1136 21 0 0 0 chr3 72271547 72271568 -87328215 + AT_rich Low_complexity Low_complexity 1 21 0 3 1136 206 118 0 0 chr3 72271663 72271697 -87328086 + (C)n Simple_repeat Simple_repeat 1 34 0 3 1136 32 81 0 0 chr3 72272079 72272153 -87327630 + AT_rich Low_complexity Low_complexity 1 74 0 3 1136 1896 63 8 4 chr3 72273157 72273444 -87326339 + L1_Mus1 LINE L1 6308 6567 0 3 1136 302 328 155 32 chr3 72273461 72273770 -87326013 + L1MD LINE L1 3401 3747 -2399 3 1136 405 0 0 0 chr3 72273807 72273852 -87325931 + (TA)n Simple_repeat Simple_repeat 1 45 0 3 1136 234 308 9 45 chr3 72274338 72274450 -87325333 + L1MD3 LINE L1 7162 7269 -726 3 1136 1564 139 8 8 chr3 72274466 72274719 -87325064 + L1_Mus3 LINE L1 6386 6638 0 3 1136 1380 226 49 10 chr3 72274742 72275050 -87324733 + MTC LTR MaLR 102 421 0 3 1136 349 276 0 19 chr3 72275550 72275657 -87324126 + MTEb LTR MaLR 275 379 0 3 1136 811 279 147 22 chr3 72276160 72276411 -87323372 - MTD LTR MaLR -20 399 119 3 1136 1439 142 32 4 chr3 72276411 72276658 -87323125 + Lx LINE L1 6400 6653 -1 3 1136 1137 128 0 0 chr3 72276663 72276843 -87322940 + (GAGAA)n Simple_repeat Simple_repeat 1 180 0 3 1136 342 0 0 0 chr3 72276843 72276881 -87322902 + (GAAAA)n Simple_repeat Simple_repeat 1 38 0 3 1136 811 276 151 22 chr3 72276881 72276946 -87322837 - MTD LTR MaLR -306 113 50 3 1136 21 36 0 0 chr3 72277303 72277331 -87322452 + AT_rich Low_complexity Low_complexity 1 28 0 3 1136 3685 214 113 16 chr3 72277360 72278221 -87321562 - Lx6 LINE L1 0 7460 6517 3 1136 1534 254 123 31 chr3 72278220 72278707 -87321076 + Lx6 LINE L1 5981 6512 -948 3 1136 224 208 21 0 chr3 72280163 72280211 -87319572 + (TG)n Simple_repeat Simple_repeat 2 50 0 3 1136 324 406 14 0 chr3 72280344 72280482 -87319301 - RSINE1 SINE B4 -22 143 4 3 1136 221 250 0 19 chr3 72281466 72281519 -87318264 + CT-rich Low_complexity Low_complexity 2 53 0 3 1136 1244 280 35 38 chr3 72281783 72282236 -87317547 - MT2A LTR ERVL 0 533 82 3 1136 298 232 110 0 chr3 72282320 72282402 -87317381 - MT2A LTR ERVL -442 91 1 3 1136 22 35 0 0 chr3 72283068 72283097 -87316686 + AT_rich Low_complexity Low_complexity 1 29 0 3 1136 1333 240 99 22 chr3 72283426 72283920 -87315863 + Lx9 LINE L1 7112 7643 -1 3 1136 500 304 68 66 chr3 72284005 72284445 -87315338 - L1M3 LINE L1 -1258 4888 4445 3 1136 887 51 0 8 chr3 72284487 72284605 -87315178 - B1_Mus1 SINE Alu -2 146 30 3 1136 252 379 87 43 chr3 72284751 72285005 -87314778 - LTR53 LTR ERVL -181 338 74 3 1136 417 86 0 0 chr3 72285084 72285142 -87314641 + (TG)n Simple_repeat Simple_repeat 1 58 0 3 1136 307 394 0 0 chr3 72285154 72285253 -87314530 - RSINE1 SINE B4 -38 127 29 4 1136 336 64 0 0 chr3 72285571 72285618 -87314165 + (TAA)n Simple_repeat Simple_repeat 2 48 0 4 1136 425 19 19 0 chr3 72285693 72285747 -87314036 + (TA)n Simple_repeat Simple_repeat 1 55 0 4 1136 235 407 33 6 chr3 72285747 72285930 -87313853 - Tigger7 DNA MER2_type -2292 199 12 4 1136 638 217 0 8 chr3 72287545 72287675 -87312108 + ORR1B1-int LTR MaLR 1381 1509 0 4 1136 2036 189 8 8 chr3 72287675 72288069 -87311714 + ORR1B1 LTR MaLR 1 394 0 4 1136 4044 131 8 14 chr3 72288448 72289100 -87310683 + L1_Mus3 LINE L1 5990 6637 -1 4 1136 2532 242 89 18 chr3 72289100 72289945 -87309838 + Lx5 LINE L1 6064 7050 -8 4 1136 1132 254 93 38 chr3 72290041 72290484 -87309299 - MERVL_2A-int LTR ERVL -21 5740 5274 4 1136 423 0 0 0 chr3 72290492 72290539 -87309244 + (TG)n Simple_repeat Simple_repeat 2 48 0 4 1136 2661 37 28 0 chr3 72290539 72290861 -87308922 - IAPEY3_LTR LTR ERVK -1 331 1 4 1136 5240 246 62 22 chr3 72291431 72292148 -87307635 - MERVL_2A-int LTR ERVL -489 5272 4518 4 1136 3265 100 6 11 chr3 72292148 72292623 -87307160 - MT2C_Mm LTR ERVL -2 473 1 4 1136 5240 246 62 22 chr3 72292623 72293215 -87306568 - MERVL_2A-int LTR ERVL -1244 4517 3911 4 1136 656 189 8 0 chr3 72293213 72293340 -87306443 - MERVL_2A-int LTR ERVL -2909 2852 2725 4 1136 1408 306 58 17 chr3 72293354 72293877 -87305906 + Lx6 LINE L1 6511 7432 -28 4 1136 2310 259 24 10 chr3 72293895 72294483 -87305300 - MERVL_2A-int LTR ERVL -3046 2715 2120 4 1136 3464 279 48 21 chr3 72294483 72295241 -87304542 - MERVL_2A-int LTR ERVL -4127 1634 888 4 1136 1347 87 27 0 chr3 72295241 72295426 -87304357 + B2_Mm2 SINE B2 1 190 -5 4 1136 3464 279 48 21 chr3 72295426 72295801 -87303982 - MERVL_2A-int LTR ERVL -4874 887 471 4 1136 400 322 88 93 chr3 72295812 72296219 -87303564 - RMER10A LTR ERVL -25 417 13 4 1136 517 229 97 32 chr3 72296236 72296421 -87303362 - MERVL_2A-int LTR ERVL -5288 473 277 4 1136 768 172 0 0 chr3 72296668 72296813 -87302970 + (TA)n Simple_repeat Simple_repeat 1 145 0 4 1136 474 33 0 0 chr3 72296869 72296929 -87302854 + (TAGA)n Simple_repeat Simple_repeat 1 60 0 4 1136 300 245 65 5 chr3 72296971 72297083 -87302700 - ORR1D2 LTR MaLR -36 343 226 4 1136 28 61 0 0 chr3 72297083 72297132 -87302651 + AT_rich Low_complexity Low_complexity 1 49 0 4 1136 340 320 110 26 chr3 72298465 72298619 -87301164 + MLT1A0 LTR MaLR 198 364 -1 4 1136 441 0 0 0 chr3 72299096 72299145 -87300638 + (TA)n Simple_repeat Simple_repeat 2 50 0 4 1136 74 12 0 0 chr3 72301060 72301141 -87298642 + AT_rich Low_complexity Low_complexity 1 81 0 4 1136 329 262 0 6 chr3 72301143 72301256 -87298527 - L1MA4 LINE L1 -399 5892 5782 4 1136 245 359 65 19 chr3 72301395 72301611 -87298172 - L1M4 LINE L1 -591 5583 5358 4 1136 282 275 99 24 chr3 72301755 72302008 -87297775 - L1MA4 LINE L1 -969 5174 4903 4 1136 673 318 106 75 chr3 72302172 72302492 -87297291 + MTE2b LTR MaLR 1 330 -49 4 1136 234 23 0 65 chr3 72302870 72302916 -87296867 + (TTTTG)n Simple_repeat Simple_repeat 3 45 0 4 1136 373 322 70 24 chr3 72302934 72303147 -87296636 - L1MA4 LINE L1 -1520 4623 4401 4 1136 689 267 28 0 chr3 72303271 72303447 -87296336 - U2 snRNA snRNA -2 186 6 4 1136 274 315 135 18 chr3 72303461 72303798 -87295985 - L1MA4 LINE L1 -1863 4280 3894 4 1136 498 313 85 14 chr3 72303816 72304182 -87295601 - L1MA4 LINE L1 -2695 3448 3057 4 1136 21 71 0 0 chr3 72304999 72305041 -87294742 + AT_rich Low_complexity Low_complexity 1 42 0 4 1136 1094 322 59 6 chr3 72305151 72305629 -87294154 + Lx8 LINE L1 6758 7260 -213 4 1136 2456 184 30 18 chr3 72305664 72306169 -87293614 - RMER19C LTR ERVK -27 584 3 4 1136 3331 138 11 5 chr3 72306476 72307036 -87292747 + RLTR22_Mur LTR ERVK 251 813 -1035 4 1136 1436 163 4 41 chr3 72307319 72307587 -87292196 + RLTR22_Mur LTR ERVK 1591 1848 0 4 1136 1276 206 77 60 chr3 72308052 72308455 -87291328 - RMER17C LTR ERVK 0 410 1 4 1136 1179 41 7 0 chr3 72309386 72309532 -87290251 - B1_Mm SINE Alu 0 147 1 4 1136 925 122 0 81 chr3 72309698 72309858 -87289925 + B1_Mus1 SINE Alu 2 148 0 4 1136 444 148 0 0 chr3 72309858 72309966 -87289817 + (A)n Simple_repeat Simple_repeat 1 108 0 4 1136 5082 90 6 3 chr3 72309969 72310668 -87289115 + L1_Mus2 LINE L1 5865 6565 -1 4 1136 183 175 0 0 chr3 72310710 72310739 -87289044 + (TA)n Simple_repeat Simple_repeat 2 30 0 4 1136 327 49 0 0 chr3 72310739 72310780 -87289003 + (CA)n Simple_repeat Simple_repeat 2 42 0 4 1136 183 175 0 0 chr3 72310780 72310790 -87288993 + (TA)n Simple_repeat Simple_repeat 2 11 0 4 1136 1110 331 45 34 chr3 72310930 72311487 -87288296 - Lx9 LINE L1 -461 7183 6621 4 1136 255 61 0 0 chr3 72311528 72311561 -87288222 + (TTTA)n Simple_repeat Simple_repeat 4 36 0 4 1136 816 213 39 19 chr3 72311561 72311767 -87288016 - Lx4B LINE L1 -22 7036 6827 4 1136 32 0 0 0 chr3 72311774 72311806 -87287977 + AT_rich Low_complexity Low_complexity 1 32 0 4 1136 34576 79 8 6 chr3 72311807 72317866 -87281917 - L1Md_F3 LINE L1 -1 6583 555 4 1136 3023 78 12 9 chr3 72317982 72318409 -87281374 - L1Md_F2 LINE L1 -12 6570 6143 4 1136 1920 102 0 44 chr3 72318408 72318704 -87281079 - L1_Mus2 LINE L1 -2 6564 6282 4 1136 330 229 0 0 chr3 72319236 72319332 -87280451 + (TA)n Simple_repeat Simple_repeat 1 96 0 4 1136 991 137 0 0 chr3 72319374 72319520 -87280263 - B1_Mus1 SINE Alu 0 148 3 4 1136 248 358 21 10 chr3 72319855 72319951 -87279832 - RSINE1 SINE B4 -48 117 21 4 1136 1367 168 35 51 chr3 72320274 72320588 -87279195 + RMER16-int LTR ERVK 27 335 -5071 4 1136 287 95 0 0 chr3 72320588 72320630 -87279153 + RMER16-int LTR ERVK 1677 1718 -3688 4 1136 3483 125 87 19 chr3 72320630 72321225 -87278558 + RMER16-int LTR ERVK 2007 2642 -2764 4 1136 1987 192 86 24 chr3 72321225 72321585 -87278198 + RMER17B LTR ERVK 509 899 -59 4 1136 3973 76 34 29 chr3 72321585 72322142 -87277641 - LTRIS2 LTR ERV1 0 564 5 4 1136 1987 192 86 24 chr3 72322142 72322202 -87277581 + RMER17B LTR ERVK 900 955 -3 4 1136 15870 131 26 20 chr3 72322228 72324886 -87274897 + RMER16-int LTR ERVK 2733 5406 0 4 1136 1115 231 7 62 chr3 72325032 72325341 -87274442 + RMER16 LTR ERVK 242 533 0 4 1136 390 261 168 25 chr3 72325342 72325503 -87274280 - B3 SINE B2 -6 210 27 4 1136 710 236 82 33 chr3 72325516 72325770 -87274013 - RLTR25A LTR ERVK 0 1103 759 4 1136 3026 189 105 15 chr3 72325863 72326590 -87273193 - RLTR25A LTR ERVK -166 862 147 4 1136 642 122 0 0 chr3 72326608 72326715 -87273068 + (CA)n Simple_repeat Simple_repeat 2 108 0 4 1136 407 241 117 0 chr3 72326823 72326968 -87272815 - Lx7 LINE L1 -329 7367 7206 4 1136 318 313 24 0 chr3 72326972 72327055 -87272728 - B4A SINE B4 -207 85 1 4 1136 23 33 0 0 chr3 72327237 72327267 -87272516 + AT_rich Low_complexity Low_complexity 1 30 0 4 1136 2933 29 0 6 chr3 72327838 72328182 -87271601 - ORR1A0 LTR MaLR -4 342 1 4 1136 13983 59 2 1 chr3 72328182 72329973 -87269810 - ORR1A0-int LTR MaLR 0 1792 1 4 1136 2937 38 0 0 chr3 72329973 72330319 -87269464 - ORR1A0 LTR MaLR 0 346 1 4 1136 16090 91 26 6 chr3 72330846 72334040 -87265743 + L1Md_F2 LINE L1 420 3644 -2239 4 1136 5231 103 3 1 chr3 72334038 72334786 -87264997 + L1Md_F2 LINE L1 4839 5587 -296 4 1136 7233 68 21 3 chr3 72334787 72335747 -87264036 + L1Md_F2 LINE L1 5589 6565 -17 4 1136 1617 87 0 21 chr3 72336395 72336631 -87263152 - L1Md_F2 LINE L1 -12 6570 6340 4 1136 279 275 0 12 chr3 72337251 72337332 -87262451 + (TA)n Simple_repeat Simple_repeat 2 81 0 4 1136 2397 187 132 34 chr3 72338118 72338672 -87261111 + RMER19C LTR ERVK 4 611 0 4 1136 21 57 0 0 chr3 72338966 72339001 -87260782 + AT_rich Low_complexity Low_complexity 1 35 0 4 1136 21 71 0 0 chr3 72339281 72339323 -87260460 + AT_rich Low_complexity Low_complexity 1 42 0 4 1136 635 359 17 13 chr3 72339323 72339546 -87260237 - B3A SINE B2 -1 215 3 4 1136 21 36 0 0 chr3 72339640 72339668 -87260115 + AT_rich Low_complexity Low_complexity 1 28 0 4 1136 231 326 21 43 chr3 72339706 72339799 -87259984 - B1_Mus2 SINE Alu -51 96 6 4 1136 269 204 0 0 chr3 72340587 72340636 -87259147 + MTEa LTR MaLR 331 379 0 4 1136 3231 34 0 0 chr3 72340679 72341064 -87258719 - L1Md_T LINE L1 -1 6581 6197 4 1136 8138 25 2 1 chr3 72341064 72342058 -87257725 + L1_Mus1 LINE L1 4844 5832 -735 4 1136 341 352 105 25 chr3 72342157 72342518 -87257265 + RMER15-int LTR ERVL 1224 1613 -3386 4 1136 297 306 45 18 chr3 72342551 72342661 -87257122 + RMER15-int LTR ERVL 4421 4533 -466 4 1136 552 390 59 5 chr3 72342829 72343048 -87256735 - ORR1E LTR MaLR -114 245 15 4 1136 220 365 120 9 chr3 72343170 72343278 -87256505 + B3A SINE B2 49 168 -30 4 1136 2055 203 15 17 chr3 72343559 72343970 -87255813 + MTC LTR MaLR 3 412 -9 4 1136 369 0 0 0 chr3 72344190 72344231 -87255552 + (T)n Simple_repeat Simple_repeat 1 41 0 4 1136 1034 75 7 27 chr3 72344231 72344381 -87255402 - B1_Mm SINE Alu 0 147 1 4 1136 536 79 57 38 chr3 72344868 72344973 -87254810 + L1_Mus3 LINE L1 6528 6634 -4 4 1136 24 0 0 0 chr3 72345105 72345129 -87254654 + AT_rich Low_complexity Low_complexity 1 24 0 4 1136 429 244 50 7 chr3 72346153 72346306 -87253477 + L1M5 LINE L1 5337 5495 -683 4 1136 6791 101 13 14 chr3 72346366 72348018 -87251765 - L1_Mus2 LINE L1 -1 6565 4923 4 1136 7405 23 0 0 chr3 72348013 72349027 -87250756 - L1Md_A LINE L1 -546 6036 5023 4 1136 4450 38 4 0 chr3 72349027 72349560 -87250223 + L1Md_T LINE L1 6047 6581 -1 4 1136 5216 200 0 85 chr3 72349560 72349993 -87249790 - L1_Mur1 LINE L1 -861 5025 4702 4 1136 188 88 0 56 chr3 72349993 72350029 -87249754 + (CATATA)n Simple_repeat Simple_repeat 3 36 0 4 1136 230 354 38 0 chr3 72350267 72350346 -87249437 - BC1_Mm scRNA scRNA -69 83 2 4 1136 203 300 0 0 chr3 72350381 72350431 -87249352 + CT-rich Low_complexity Low_complexity 3 52 0 4 1136 245 109 0 21 chr3 72350433 72350480 -87249303 + (TG)n Simple_repeat Simple_repeat 1 46 0 4 1136 442 380 15 0 chr3 72350503 72350640 -87249143 - RSINE1 SINE B4 -12 153 15 4 1136 456 301 167 25 chr3 72351106 72351430 -87248353 + ORR1D2 LTR MaLR 1 370 0 4 1137 872 115 0 0 chr3 72352091 72352213 -87247570 - L1_Mus4 LINE L1 -369 6267 6146 4 1137 2186 99 9 29 chr3 72352213 72352558 -87247225 + L1_Mus4 LINE L1 6299 6636 0 4 1137 1041 125 0 0 chr3 72353221 72353365 -87246418 + B1_Mus1 SINE Alu 2 145 -3 4 1137 701 59 20 0 chr3 72353365 72353467 -87246316 + (TAAAA)n Simple_repeat Simple_repeat 2 105 0 4 1137 825 108 13 13 chr3 72353885 72354035 -87245748 + (AGGGGG)n Simple_repeat Simple_repeat 4 153 0 4 1137 2129 267 55 18 chr3 72354172 72354851 -87244932 + Lx9 LINE L1 6433 7136 -508 4 1137 7686 168 31 2 chr3 72354879 72356281 -87243502 + RMER6-int LTR ERVK 25 1467 -1710 4 1137 31208 97 6 7 chr3 72356282 72361450 -87238333 + L1Md_F2 LINE L1 422 5583 -300 4 1137 7167 84 16 5 chr3 72361453 72362438 -87237345 + L1Md_F2 LINE L1 5587 6582 0 4 1137 387 0 0 0 chr3 72362446 72362489 -87237294 + (GAAAA)n Simple_repeat Simple_repeat 2 44 0 4 1137 1468 202 7 7 chr3 72362494 72362778 -87237005 + RMER6-int LTR ERVK 1454 1737 -1440 4 1137 326 213 0 0 chr3 72362829 72362890 -87236893 + LSU-rRNA_Hsa rRNA rRNA 1777 1837 -3198 4 1137 1056 178 73 13 chr3 72362896 72363129 -87236654 + RMER6-int LTR ERVK 2585 2831 -346 4 1137 1068 159 11 5 chr3 72363132 72363321 -87236462 + RMER6-int LTR ERVK 2981 3170 -7 4 1137 1506 244 96 41 chr3 72363326 72363980 -87235803 + RMER6C LTR ERVK 1 690 0 4 1137 1206 277 94 0 chr3 72363980 72364395 -87235388 + Lx9 LINE L1 7184 7637 -7 4 1137 478 291 18 31 chr3 72364494 72364657 -87235126 - RSINE1 SINE B4 0 165 5 4 1137 6853 110 23 5 chr3 72364673 72365678 -87234105 - L1_Mus4 LINE L1 -1 6635 5613 5 1137 2698 82 8 8 chr3 72365678 72366061 -87233722 + MTA_Mm LTR MaLR 1 383 -13 5 1137 577 203 0 0 chr3 72366062 72366180 -87233603 - L1_Mur1 LINE L1 -272 5614 5497 5 1137 4588 155 6 4 chr3 72366186 72366984 -87232799 + L1_Mm LINE L1 4686 5485 -398 5 1137 3321 44 2 2 chr3 72367183 72367595 -87232188 - L1Md_F3 LINE L1 -1 6583 6172 5 1137 1093 66 0 7 chr3 72367640 72367778 -87232005 + B1_Mus2 SINE Alu 1 137 -10 5 1137 207 0 0 0 chr3 72367780 72367803 -87231980 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 5 1137 585 361 55 12 chr3 72368202 72368746 -87231037 + Lx8 LINE L1 6371 6950 -523 5 1137 327 179 0 0 chr3 72368759 72368826 -87230957 + (CA)n Simple_repeat Simple_repeat 2 68 0 5 1137 445 350 42 50 chr3 72368831 72369189 -87230594 + Lx8 LINE L1 6972 7339 -134 5 1137 645 337 0 0 chr3 72370177 72370349 -87229434 - B3 SINE B2 -44 172 1 5 1137 201 121 0 0 chr3 72372004 72372037 -87227746 + (TA)n Simple_repeat Simple_repeat 2 34 0 5 1137 31 44 0 0 chr3 72373759 72373804 -87225979 + AT_rich Low_complexity Low_complexity 1 45 0 5 1137 22 0 0 0 chr3 72374381 72374403 -87225380 + AT_rich Low_complexity Low_complexity 1 22 0 5 1137 21 71 0 0 chr3 72375802 72375844 -87223939 + AT_rich Low_complexity Low_complexity 1 42 0 5 1137 825 76 23 0 chr3 72376512 72376643 -87223140 + (TCTA)n Simple_repeat Simple_repeat 4 137 0 5 1137 2132 100 40 0 chr3 72377026 72377325 -87222458 - RLTR10E LTR ERVK 0 311 1 5 1137 245 238 0 45 chr3 72378568 72378617 -87221166 + polypyrimidine Low_complexity Low_complexity 15 63 0 5 1137 417 121 0 0 chr3 72378617 72378700 -87221083 + (TATG)n Simple_repeat Simple_repeat 2 84 0 5 1137 245 238 0 45 chr3 72378700 72378716 -87221067 + polypyrimidine Low_complexity Low_complexity 1 14 0 5 1137 264 77 0 0 chr3 72378718 72378757 -87221026 + (CA)n Simple_repeat Simple_repeat 2 40 0 5 1137 327 113 0 0 chr3 72378834 72378887 -87220896 + (TC)n Simple_repeat Simple_repeat 1 53 0 5 1137 384 71 0 0 chr3 72378887 72378943 -87220840 + (TG)n Simple_repeat Simple_repeat 1 56 0 5 1137 387 371 56 15 chr3 72379030 72379227 -87220556 - B4A SINE B4 -81 211 7 5 1137 3562 138 11 17 chr3 72379470 72380560 -87219223 - L1VL4 LINE L1 -2138 1421 131 5 1137 26 50 0 0 chr3 72381100 72381140 -87218643 + AT_rich Low_complexity Low_complexity 1 40 0 5 1137 673 90 10 0 chr3 72381528 72381628 -87218155 + L1_Mur1 LINE L1 4290 4390 -1496 5 1137 522 108 0 24 chr3 72381623 72381708 -87218075 - Lx LINE L1 -684 5970 5888 5 1137 359 320 19 0 chr3 72381702 72381805 -87217978 + Lx8 LINE L1 7225 7329 -144 5 1137 1113 188 12 32 chr3 72381901 72382154 -87217629 - Lx2 LINE L1 -8 6989 6742 5 1137 727 180 7 21 chr3 72382157 72382299 -87217484 + Lx2 LINE L1 6537 6676 -321 5 1137 454 312 88 29 chr3 72383022 72383306 -87216477 + MER34 LTR ERV1 3 301 -270 5 1137 341 0 45 0 chr3 72383517 72383561 -87216222 + (CAAAA)n Simple_repeat Simple_repeat 2 47 0 5 1137 24 67 0 0 chr3 72383930 72383975 -87215808 + AT_rich Low_complexity Low_complexity 1 45 0 5 1137 28 29 0 0 chr3 72384072 72384107 -87215676 + AT_rich Low_complexity Low_complexity 1 35 0 5 1137 24 0 0 0 chr3 72384132 72384156 -87215627 + AT_rich Low_complexity Low_complexity 1 24 0 5 1137 27 81 0 0 chr3 72384417 72384479 -87215304 + AT_rich Low_complexity Low_complexity 1 62 0 5 1137 1042 254 67 34 chr3 72384500 72384948 -87214835 - RCHARR1 DNA MER1_type -67 907 445 5 1137 238 167 35 23 chr3 72384969 72385055 -87214728 + (TA)n Simple_repeat Simple_repeat 1 87 0 5 1137 3639 240 15 11 chr3 72385291 72386080 -87213703 + Lx5 LINE L1 6250 7041 -9 5 1137 327 25 0 0 chr3 72386083 72386123 -87213660 + (CAA)n Simple_repeat Simple_repeat 3 42 0 5 1137 272 325 135 6 chr3 72386157 72386327 -87213456 + Lx6 LINE L1 5982 6173 -1287 5 1137 4186 49 0 0 chr3 72386346 72386854 -87212929 - L1Md_F2 LINE L1 -202 6380 5873 5 1137 4870 77 5 5 chr3 72386849 72387502 -87212281 - L1_Mm LINE L1 -316 5567 4915 5 1137 21 36 0 0 chr3 72387505 72387533 -87212250 + AT_rich Low_complexity Low_complexity 1 28 0 5 1137 338 102 0 0 chr3 72387549 72387598 -87212185 + L1_Mm LINE L1 2713 2761 -3122 5 1137 6637 84 3 3 chr3 72387591 72388511 -87211272 + L1_Mm LINE L1 2305 3224 -2659 5 1137 2557 249 84 29 chr3 72388519 72388639 -87211144 - RMER1A Other Other -5 1025 882 5 1137 191 36 36 0 chr3 72388639 72388667 -87211116 + (CAA)n Simple_repeat Simple_repeat 2 30 0 5 1137 2557 274 65 75 chr3 72388667 72389705 -87210078 - RMER1A Other Other -128 938 7 5 1137 212 281 0 0 chr3 72390630 72390687 -87209096 + (TA)n Simple_repeat Simple_repeat 2 58 0 5 1137 24 0 0 0 chr3 72390997 72391021 -87208762 + AT_rich Low_complexity Low_complexity 1 24 0 5 1137 23 54 0 0 chr3 72391596 72391633 -87208150 + AT_rich Low_complexity Low_complexity 1 37 0 5 1137 3837 189 13 0 chr3 72391634 72392313 -87207470 - Lx4A LINE L1 -2 7056 6369 5 1137 6666 163 39 24 chr3 72392317 72392509 -87207274 + Lx4A LINE L1 4557 4724 -1153 5 1137 225 0 0 0 chr3 72392509 72392534 -87207249 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 5 1137 6666 188 30 26 chr3 72392534 72394447 -87205336 + Lx4A LINE L1 4725 6659 -341 5 1137 416 221 92 69 chr3 72394923 72395054 -87204729 - B2_Mm2 SINE B2 -18 177 44 5 1137 1062 209 151 15 chr3 72395357 72395682 -87204101 - ORR1D1 LTR MaLR -3 371 3 5 1137 444 117 0 0 chr3 72396583 72396660 -87203123 - L1Md_F2 LINE L1 -4 6578 6502 5 1137 257 51 0 25 chr3 72397206 72397246 -87202537 + (TTTTA)n Simple_repeat Simple_repeat 3 41 0 5 1137 432 0 0 0 chr3 72397262 72397310 -87202473 + (TTTA)n Simple_repeat Simple_repeat 1 48 0 5 1137 198 0 0 0 chr3 72397310 72397331 -87202452 + (GA)n Simple_repeat Simple_repeat 2 23 0 5 1137 22400 84 16 4 chr3 72397367 72401191 -87198592 - L1Md_F2 LINE L1 0 6582 2713 5 1137 226 352 25 100 chr3 72402601 72402721 -87197062 - ID_B1 SINE B4 -82 142 32 5 1137 316 378 25 0 chr3 72402980 72403099 -87196684 - B1F1 SINE Alu -6 143 22 5 1137 1511 198 30 60 chr3 72403190 72403560 -87196223 - Lx4B LINE L1 -63 6995 6637 5 1137 26 0 0 0 chr3 72404343 72404369 -87195414 + AT_rich Low_complexity Low_complexity 1 26 0 5 1137 207 0 0 0 chr3 72405335 72405358 -87194425 + (TA)n Simple_repeat Simple_repeat 1 23 0 5 1137 274 284 104 20 chr3 72405489 72405616 -87194167 + MLT1B LTR MaLR 261 449 -18 5 1137 27 49 0 0 chr3 72406600 72406641 -87193142 + AT_rich Low_complexity Low_complexity 1 41 0 5 1137 769 67 29 7 chr3 72408427 72408563 -87191220 + L1_Mus3 LINE L1 6500 6638 0 5 1137 297 0 0 0 chr3 72408586 72408619 -87191164 + (TA)n Simple_repeat Simple_repeat 2 34 0 5 1137 441 0 0 0 chr3 72408619 72408667 -87191116 + (TG)n Simple_repeat Simple_repeat 2 50 0 5 1137 22 0 0 0 chr3 72409596 72409618 -87190165 + AT_rich Low_complexity Low_complexity 1 22 0 5 1137 446 83 14 0 chr3 72409713 72409785 -87189998 + (TA)n Simple_repeat Simple_repeat 2 74 0 5 1137 232 280 130 6 chr3 72409785 72410002 -87189781 - L1_Mm LINE L1 -1195 4945 4696 5 1137 257 37 54 36 chr3 72410273 72410329 -87189454 + (TTTG)n Simple_repeat Simple_repeat 4 60 0 5 1137 1818 274 78 18 chr3 72410335 72410886 -87188897 - Lx6 LINE L1 -27 7433 6848 5 1137 261 0 0 0 chr3 72410886 72410915 -87188868 + (TG)n Simple_repeat Simple_repeat 2 30 0 5 1137 1818 274 78 18 chr3 72410915 72410928 -87188855 - Lx6 LINE L1 -613 6847 6835 5 1137 318 224 0 0 chr3 72410932 72411084 -87188699 + CT-rich Low_complexity Low_complexity 1 152 0 5 1137 977 266 112 12 chr3 72411084 72411096 -87188687 - Lx6 LINE L1 -566 6894 6882 5 1137 366 23 0 0 chr3 72411096 72411139 -87188644 + (TG)n Simple_repeat Simple_repeat 2 44 0 5 1137 977 266 112 12 chr3 72411139 72411238 -87188545 - Lx6 LINE L1 -579 6881 6764 5 1137 365 0 22 0 chr3 72411238 72411283 -87188500 + (TC)n Simple_repeat Simple_repeat 1 46 0 5 1137 977 266 112 12 chr3 72411283 72411509 -87188274 - Lx6 LINE L1 -697 6763 6523 5 1137 3051 135 22 6 chr3 72411523 72412015 -87187768 - Lx LINE L1 -2 6652 6153 5 1137 5854 71 0 0 chr3 72412011 72412770 -87187013 + L1_Mus2 LINE L1 5807 6565 -1 5 1137 2497 167 106 0 chr3 72412783 72413263 -87186520 - L1_Mur2 LINE L1 -684 5193 4663 5 1137 861 294 106 0 chr3 72413267 72413597 -87186186 - Lx6 LINE L1 -1094 6366 6002 5 1137 2294 201 64 25 chr3 72413864 72414455 -87185328 - Lx6 LINE L1 -558 5322 4709 5 1137 3227 31 0 0 chr3 72414451 72414837 -87184946 + L1_Mm LINE L1 4248 4633 -1250 5 1137 956 139 6 0 chr3 72414870 72415042 -87184741 + (TTTTTG)n Simple_repeat Simple_repeat 2 174 0 5 1137 3413 182 20 28 chr3 72415053 72415815 -87183968 - Lx6 LINE L1 -1216 4664 3909 5 1137 1357 251 66 11 chr3 72416132 72416511 -87183272 + Lx7 LINE L1 6933 7332 -364 5 1137 1015 293 114 18 chr3 72416637 72417164 -87182619 + RMER1B Other Other 65 877 -465 5 1137 2500 242 103 6 chr3 72417142 72417746 -87182037 + RMER1B Other Other 176 867 -199 5 1137 991 96 0 0 chr3 72417746 72417881 -87181902 + B1_Mus1 SINE Alu 1 135 -13 5 1137 600 14 0 0 chr3 72417883 72417952 -87181831 + (GAAA)n Simple_repeat Simple_repeat 2 70 0 5 1137 2500 237 99 3 chr3 72417952 72418118 -87181665 + RMER1B Other Other 809 1050 -16 5 1137 5086 20 0 0 chr3 72418124 72418716 -87181067 - L1Md_T LINE L1 -335 5548 4957 5 1137 441 20 0 0 chr3 72418712 72418761 -87181022 + L1Md_T LINE L1 5538 5586 -297 5 1137 8416 32 0 0 chr3 72418762 72419754 -87180029 + L1Md_T LINE L1 5588 6579 -3 5 1137 22 35 0 0 chr3 72419754 72419783 -87180000 + AT_rich Low_complexity Low_complexity 1 29 0 5 1137 673 237 46 103 chr3 72419801 72420130 -87179653 + Lx7 LINE L1 7387 7696 0 5 1137 490 364 100 28 chr3 72420505 72420754 -87179029 - MTC LTR MaLR -14 407 141 5 1137 27 29 0 0 chr3 72420773 72420807 -87178976 + AT_rich Low_complexity Low_complexity 1 34 0 5 1137 1430 266 45 9 chr3 72421535 72421975 -87177808 - Lx9 LINE L1 -312 7332 6877 5 1137 453 202 96 0 chr3 72422061 72422165 -87177618 + MTD LTR MaLR 293 406 -13 5 1137 1267 262 90 68 chr3 72422262 72422950 -87176833 - RMER13A LTR ERVK -131 777 1 5 1137 228 414 45 0 chr3 72422999 72423110 -87176673 - B4A SINE B4 -176 116 1 5 1137 420 309 25 63 chr3 72424696 72424855 -87174928 + RSINE1 SINE B4 8 160 -5 5 1137 427 316 51 17 chr3 72425087 72425264 -87174519 + B3A SINE B2 1 183 -15 5 1137 21 82 0 0 chr3 72426286 72426335 -87173448 + AT_rich Low_complexity Low_complexity 1 49 0 6 1137 209 108 27 0 chr3 72426519 72426556 -87173227 + (TTTA)n Simple_repeat Simple_repeat 4 41 0 6 1137 758 199 0 15 chr3 72426905 72427038 -87172745 - B1_Mur2 SINE Alu -9 140 10 6 1137 235 258 150 8 chr3 72427105 72427238 -87172545 + MER67C LTR ERV1 45 196 -515 6 1137 273 363 81 7 chr3 72427254 72427390 -87172393 + MER67C LTR ERV1 231 376 -335 6 1137 534 16 0 0 chr3 72427781 72427844 -87171939 + (CA)n Simple_repeat Simple_repeat 2 64 0 6 1137 1222 109 16 11 chr3 72428132 72428318 -87171465 + B2_Mm2 SINE B2 2 188 -7 6 1137 4370 193 28 31 chr3 72428375 72429280 -87170503 - Lx4B LINE L1 -4 7054 6153 6 1137 997 198 60 20 chr3 72429321 72429573 -87170210 + Lx LINE L1 6393 6654 0 6 1137 3456 180 34 27 chr3 72429705 72430414 -87169369 + RMER6D LTR ERVK 3 716 -4 6 1137 305 176 0 0 chr3 72431091 72431142 -87168641 + ID_B1 SINE B4 171 221 -3 6 1137 740 150 0 14 chr3 72431665 72431807 -87167976 + CT-rich Low_complexity Low_complexity 4 143 0 6 1137 558 252 52 22 chr3 72431807 72431941 -87167842 - B1_Mus2 SINE Alu -5 142 5 6 1137 21 0 0 0 chr3 72432056 72432077 -87167706 + AT_rich Low_complexity Low_complexity 1 21 0 6 1137 22 35 0 0 chr3 72432387 72432416 -87167367 + AT_rich Low_complexity Low_complexity 1 29 0 6 1137 27 0 0 0 chr3 72433376 72433403 -87166380 + AT_rich Low_complexity Low_complexity 1 27 0 6 1137 318 111 0 0 chr3 72434604 72434667 -87165116 - L1_Mus1 LINE L1 0 6567 6505 6 1137 822 236 5 74 chr3 72434704 72434919 -87164864 + B3 SINE B2 1 200 -16 6 1137 438 53 0 0 chr3 72434919 72434976 -87164807 + (TAAAA)n Simple_repeat Simple_repeat 5 61 0 6 1137 2468 209 83 33 chr3 72435080 72435684 -87164099 + Lx2B LINE L1 6353 6986 -14 6 1137 705 56 0 0 chr3 72436139 72436229 -87163554 + (TTTC)n Simple_repeat Simple_repeat 3 92 0 6 1137 380 316 204 31 chr3 72436951 72437461 -87162322 + L1MD3 LINE L1 6973 7570 -425 6 1137 573 290 0 14 chr3 72437730 72437877 -87161906 - B1_Mur2 SINE Alu -1 148 4 6 1137 203 237 0 0 chr3 72438555 72438593 -87161190 + polypyrimidine Low_complexity Low_complexity 4 41 0 6 1137 426 39 0 0 chr3 72438596 72438648 -87161135 + (CATA)n Simple_repeat Simple_repeat 2 53 0 6 1137 359 100 0 0 chr3 72438648 72438698 -87161085 + HAL1-3A_ME LINE L1 1976 2025 -833 6 1137 333 85 0 0 chr3 72438851 72438910 -87160873 - L1_Mus3 LINE L1 -4 6634 6576 6 1137 9516 64 0 0 chr3 72439651 72440880 -87158903 - L1Md_F2 LINE L1 -827 5056 3828 6 1137 4462 57 2 0 chr3 72440877 72441438 -87158345 + L1Md_F2 LINE L1 5025 5586 -297 6 1137 8039 43 1 1 chr3 72441438 72442420 -87157363 + L1Md_F2 LINE L1 5587 6568 -14 6 1137 238 208 0 0 chr3 72442428 72442481 -87157302 + A-rich Low_complexity Low_complexity 3 55 0 6 1137 484 325 25 0 chr3 72442491 72442651 -87157132 + ID_B1 SINE B4 4 167 -57 6 1137 31044 93 3 1 chr3 72444512 72449349 -87150434 + L1Md_F2 LINE L1 742 5585 -298 6 1137 6558 95 5 78 chr3 72449350 72450421 -87149362 + L1Md_F2 LINE L1 5587 6579 -3 6 1137 8524 123 8 121 chr3 72451265 72452335 -87147448 + L1_Mus4 LINE L1 4276 5280 -1356 6 1137 556 208 172 13 chr3 72452335 72452486 -87147297 - B3 SINE B2 -41 175 1 6 1137 8524 123 8 121 chr3 72452486 72453926 -87145857 + L1_Mus4 LINE L1 5281 6635 -1 6 1137 287 189 27 13 chr3 72454633 72454708 -87145075 - Lx3_Mus LINE L1 0 7009 6934 6 1137 2838 67 37 0 chr3 72454721 72455096 -87144687 + Lx3_Mus LINE L1 6300 6688 -321 6 1137 9991 5 0 0 chr3 72455090 72456296 -87143487 + L1Md_A LINE L1 4768 5973 -609 6 1137 2690 77 0 11 chr3 72456450 72456816 -87142967 - L1Md_F2 LINE L1 -4 6578 6217 6 1137 305 86 309 0 chr3 72457164 72457245 -87142538 - Lx3_Mus LINE L1 -66 6943 6838 6 1137 2156 113 14 29 chr3 72457241 72457336 -87142447 - Lx3_Mus LINE L1 -573 6436 6341 6 1137 2649 115 29 10 chr3 72457336 72457750 -87142033 + BGLII_Mus LTR ERVK 1 422 0 6 1137 2156 113 14 29 chr3 72457750 72458000 -87141783 - Lx3_Mus LINE L1 -669 6340 6096 6 1137 306 0 0 0 chr3 72458564 72458598 -87141185 + (TC)n Simple_repeat Simple_repeat 1 34 0 6 1137 14102 63 2 2 chr3 72458633 72461172 -87138611 - L1Md_F2 LINE L1 -1 6581 4042 6 1137 239 267 50 0 chr3 72461958 72462018 -87137765 - Lx5 LINE L1 -141 6909 6847 6 1137 1170 112 0 0 chr3 72461991 72462152 -87137631 - Lx2 LINE L1 -195 6802 6642 6 1137 1081 173 53 34 chr3 72462187 72462345 -87137438 + Lx7 LINE L1 7385 7547 -149 6 1137 303 71 0 0 chr3 72462345 72462387 -87137396 + (CATAT)n Simple_repeat Simple_repeat 2 43 0 6 1137 1081 173 53 34 chr3 72462387 72462491 -87137292 + Lx7 LINE L1 7548 7652 -44 6 1137 21 57 0 0 chr3 72462506 72462541 -87137242 + AT_rich Low_complexity Low_complexity 1 35 0 6 1137 245 282 350 0 chr3 72464027 72464144 -87135639 + ID_B1 SINE B4 3 160 -64 6 1137 710 29 0 64 chr3 72464173 72464282 -87135501 - L1_Mus1 LINE L1 0 6567 6466 6 1137 935 227 61 0 chr3 72464365 72464563 -87135220 + B3 SINE B2 7 216 0 6 1137 1349 33 16 11 chr3 72465381 72465563 -87134220 + L1Md_F3 LINE L1 6401 6583 -1 6 1137 22 35 0 0 chr3 72465928 72465957 -87133826 + AT_rich Low_complexity Low_complexity 1 29 0 6 1137 205 86 16 65 chr3 72466975 72467037 -87132746 + T-rich Low_complexity Low_complexity 4 62 0 6 1137 3040 113 24 2 chr3 72467195 72467657 -87132126 + Lx LINE L1 6183 6654 0 6 1137 908 166 6 4 chr3 72468434 72468594 -87131189 - L1_Mm LINE L1 -495 5688 5498 6 1137 799 191 17 28 chr3 72468583 72468761 -87131022 + L1VL1 LINE L1 129 304 -6118 6 1137 396 0 0 0 chr3 72469171 72469215 -87130568 + (TTTA)n Simple_repeat Simple_repeat 2 45 0 6 1137 443 71 9 0 chr3 72469231 72469295 -87130488 - B2_Mm2 SINE B2 -102 114 47 6 1137 210 178 44 0 chr3 72469259 72469304 -87130479 - B4A SINE B4 -209 83 37 6 1137 922 164 75 0 chr3 72469323 72469482 -87130301 - B2_Mm1t SINE B2 -22 171 1 6 1137 270 244 23 11 chr3 72469662 72469749 -87130034 + Lx7 LINE L1 7609 7696 0 6 1137 28 0 0 0 chr3 72470549 72470577 -87129206 + AT_rich Low_complexity Low_complexity 1 28 0 6 1137 1110 76 0 7 chr3 72470619 72470765 -87129018 - B1_Mm SINE Alu -1 146 2 6 1137 536 238 301 20 chr3 72470836 72471128 -87128655 - ORR1D1 LTR MaLR 0 374 1 6 1137 3039 272 75 9 chr3 72471160 72472000 -87127783 - ORR1D1-int LTR MaLR -45 1325 431 6 1137 2902 70 26 5 chr3 72472021 72472408 -87127375 - MTB LTR MaLR -5 395 1 6 1137 261 0 0 0 chr3 72472411 72472440 -87127343 + (CA)n Simple_repeat Simple_repeat 2 30 0 6 1137 204 40 0 0 chr3 72472440 72472464 -87127319 + (TA)n Simple_repeat Simple_repeat 1 25 0 6 1137 1543 272 70 3 chr3 72472469 72472887 -87126896 - ORR1D1-int LTR MaLR -943 427 3 6 1137 300 172 0 0 chr3 72472888 72472946 -87126837 + T-rich Low_complexity Low_complexity 1 58 0 6 1137 1316 152 50 13 chr3 72472962 72473201 -87126582 - L1_Mus4 LINE L1 -6 6630 6383 6 1137 1236 82 32 0 chr3 72473201 72473391 -87126392 + L1_Mus4 LINE L1 5727 5926 -1083 6 1137 24 53 0 0 chr3 72473490 72473528 -87126255 + AT_rich Low_complexity Low_complexity 1 38 0 6 1137 329 335 11 75 chr3 72473855 72474029 -87125754 - RSINE1 SINE B4 0 165 3 6 1137 27 0 0 0 chr3 72474543 72474570 -87125213 + AT_rich Low_complexity Low_complexity 1 27 0 6 1137 623 270 81 5 chr3 72474571 72474768 -87125015 - B3 SINE B2 -4 212 1 6 1137 402 74 0 0 chr3 72474847 72474901 -87124882 + (GA)n Simple_repeat Simple_repeat 1 54 0 6 1137 606 28 0 0 chr3 72474905 72474977 -87124806 + (GGAA)n Simple_repeat Simple_repeat 1 72 0 6 1137 314 23 23 0 chr3 72475113 72475156 -87124627 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 6 1137 1000 71 42 21 chr3 72475156 72475299 -87124484 - B1_Mus2 SINE Alu -1 146 1 6 1137 333 301 82 27 chr3 72475457 72475806 -87123977 - L1M2 LINE L1 -1310 4833 4442 6 1137 1835 158 34 25 chr3 72475813 72475912 -87123871 + ORR1A2 LTR MaLR 1 96 -231 6 1137 1464 105 13 18 chr3 72475912 72476136 -87123647 + L1Md_F2 LINE L1 6360 6582 0 6 1137 1835 158 34 25 chr3 72476136 72476360 -87123423 + ORR1A2 LTR MaLR 97 327 0 6 1137 5010 147 24 21 chr3 72476360 72477232 -87122551 + ORR1A2-int LTR MaLR 1089 1963 0 6 1137 2133 136 12 3 chr3 72477232 72477556 -87122227 + ORR1A2 LTR MaLR 1 327 0 6 1137 1985 98 23 7 chr3 72477556 72477865 -87121918 + L1_Mus3 LINE L1 6315 6628 -10 6 1137 350 293 99 57 chr3 72477918 72477965 -87121818 - L1M2 LINE L1 -1701 4442 4401 6 1137 309 51 0 0 chr3 72477965 72478004 -87121779 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 6 1137 350 293 99 57 chr3 72478004 72478571 -87121212 - L1M2 LINE L1 -1743 4400 3802 6 1137 468 0 0 0 chr3 72478695 72478747 -87121036 + (TC)n Simple_repeat Simple_repeat 1 52 0 6 1137 222 136 23 0 chr3 72478877 72478921 -87120862 + (TTTG)n Simple_repeat Simple_repeat 4 48 0 6 1137 500 319 179 20 chr3 72479011 72479312 -87120471 - Lx8 LINE L1 -125 7348 7000 6 1137 486 0 0 0 chr3 72480302 72480356 -87119427 + (TA)n Simple_repeat Simple_repeat 1 54 0 6 1137 228 300 174 22 chr3 72481581 72481673 -87118110 + MER102b DNA MER1_type 224 329 -12 6 1137 1917 226 39 18 chr3 72482215 72482728 -87117055 - RLTR11A2 LTR ERVK 0 527 4 6 142 7284 83 9 0 chr3 72482751 72483839 -87115944 - L1_Mus1 LINE L1 -1 6566 5469 6 1138 710 144 0 0 chr3 72483839 72483957 -87115826 - RLTR11B LTR ERVK -335 118 1 6 1138 239 214 0 18 chr3 72483961 72484018 -87115765 + B4 SINE B4 1 56 -236 6 1138 450 0 0 0 chr3 72484333 72484383 -87115400 + (TG)n Simple_repeat Simple_repeat 1 50 0 6 1138 614 307 30 110 chr3 72484393 72484598 -87115185 + MT2A LTR ERVL 1 180 -353 6 1138 971 147 0 6 chr3 72484598 72484776 -87115007 + GA-rich Low_complexity Low_complexity 3 179 0 6 1138 614 307 30 110 chr3 72484776 72484870 -87114913 + MT2A LTR ERVL 181 276 -257 6 1138 927 257 34 48 chr3 72484913 72485265 -87114518 + MTD-int LTR MaLR 912 1258 0 6 1138 252 228 239 0 chr3 72485265 72485357 -87114426 + MTD LTR MaLR 1 114 -307 6 1138 2126 106 20 12 chr3 72485357 72485702 -87114081 - Lx LINE L1 0 6654 6307 6 1138 812 76 16 56 chr3 72485702 72485827 -87113956 + Lx LINE L1 5649 5768 -886 6 1138 287 210 0 88 chr3 72485875 72485943 -87113840 + MTD LTR MaLR 179 240 -179 6 1138 228 35 0 0 chr3 72486293 72486322 -87113461 + (TTAA)n Simple_repeat Simple_repeat 1 29 0 6 1138 2391 198 103 0 chr3 72486322 72486806 -87112977 - Lx5 LINE L1 -22 7028 6495 6 1138 910 42 17 0 chr3 72486814 72486932 -87112851 + B1_Mm SINE Alu 28 147 0 6 1138 2529 84 52 3 chr3 72486959 72487327 -87112456 + L1_Mus3 LINE L1 6243 6628 -10 6 1138 1425 189 12 0 chr3 72487355 72487598 -87112185 - Lx5 LINE L1 -545 6505 6260 6 1138 21 57 0 0 chr3 72488062 72488097 -87111686 + AT_rich Low_complexity Low_complexity 1 35 0 7 1138 280 367 0 0 chr3 72488825 72488915 -87110868 + ID_B1 SINE B4 81 170 -54 7 1138 267 268 84 0 chr3 72488856 72488927 -87110856 + PB1D9 SINE Alu 31 107 -13 7 1138 26 30 0 0 chr3 72489021 72489054 -87110729 + AT_rich Low_complexity Low_complexity 1 33 0 7 1138 559 332 74 38 chr3 72489732 72490124 -87109659 + MamRep605 Unknown Unknown 398 803 -73 7 1138 213 121 0 0 chr3 72490622 72490655 -87109128 + (CTCA)n Simple_repeat Simple_repeat 1 33 0 7 1138 227 29 57 0 chr3 72490681 72490716 -87109067 + (TCTCTG)n Simple_repeat Simple_repeat 4 40 0 7 1138 948 116 0 0 chr3 72490719 72490891 -87108892 + (TC)n Simple_repeat Simple_repeat 1 172 0 7 1138 25 31 0 0 chr3 72491747 72491779 -87108004 + AT_rich Low_complexity Low_complexity 1 32 0 7 1138 435 135 0 0 chr3 72492351 72492447 -87107336 + (CAT)n Simple_repeat Simple_repeat 3 98 0 7 1138 5525 109 52 1 chr3 72494506 72495469 -87104314 + Lx LINE L1 5447 6437 -217 7 1138 1466 103 54 5 chr3 72495469 72495693 -87104090 - RLTR27 LTR ERVK -74 235 1 7 1138 251 77 0 0 chr3 72495693 72495732 -87104051 + Lx LINE L1 6604 6642 -12 7 1138 322 295 84 27 chr3 72495784 72495941 -87103842 - B3A SINE B2 -1 215 50 7 1138 797 259 55 69 chr3 72496007 72496355 -87103428 - Lx9 LINE L1 -49 7595 7253 7 1138 231 284 158 12 chr3 72496727 72496809 -87102974 - MLT1A1 LTR MaLR -29 379 286 7 1138 24 32 0 0 chr3 72497101 72497132 -87102651 + AT_rich Low_complexity Low_complexity 1 31 0 7 1138 7903 44 0 1 chr3 72497176 72498144 -87101639 - L1Md_T LINE L1 0 6582 5645 7 1138 2437 81 14 31 chr3 72498586 72498945 -87100838 - L1Md_F2 LINE L1 -12 6570 6218 7 1138 5201 126 22 11 chr3 72499008 72499835 -87099948 - Lx LINE L1 -1 6653 5818 7 1138 241 173 19 0 chr3 72501955 72502007 -87097776 - L1M3 LINE L1 -2897 3243 3191 1 1138 35232 53 0 4 chr3 72502053 72507736 -87092047 + L1Md_T LINE L1 1 5589 -297 2 1138 8387 35 0 0 chr3 72507736 72508732 -87091051 + L1Md_T LINE L1 5590 6585 0 2 1138 294 180 0 0 chr3 72508861 72508911 -87090872 + B4A SINE B4 1 50 -242 3 1138 1337 75 31 21 chr3 72508940 72509131 -87090652 + B2_Mm2 SINE B2 2 194 -1 4 1138 22 0 0 0 chr3 72509783 72509805 -87089978 + AT_rich Low_complexity Low_complexity 1 22 0 5 1138 2207 175 132 107 chr3 72510142 72510815 -87088968 + RMER6C LTR ERVK 1 690 0 6 1138 1241 83 16 32 chr3 72510987 72511173 -87088610 - B2_Mm2 SINE B2 -9 186 4 7 1138 24 0 0 0 chr3 72511566 72511590 -87088193 + AT_rich Low_complexity Low_complexity 1 24 0 8 1138 2055 211 42 3 chr3 72511824 72512205 -87087578 + MTC LTR MaLR 1 396 -25 9 1138 183 114 0 0 chr3 72512219 72512254 -87087529 + (T)n Simple_repeat Simple_repeat 1 35 0 1 1138 212 0 36 0 chr3 72513407 72513435 -87086348 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 1 1138 1339 53 0 0 chr3 72513437 72513606 -87086177 + L1_Mus1 LINE L1 6396 6564 -3 1 1138 1255 106 6 6 chr3 72513606 72513786 -87085997 - B2_Mm2 SINE B2 -14 181 2 1 1138 201 270 0 45 chr3 72513950 72514016 -87085767 + (TATATG)n Simple_repeat Simple_repeat 2 64 0 1 1138 191 261 29 44 chr3 72515218 72515286 -87084497 - MIRc SINE MIR -101 167 101 1 1138 464 369 92 13 chr3 72515494 72515733 -87084050 - MER77 LTR ERVL -97 510 253 1 1138 265 340 97 46 chr3 72515793 72516080 -87083703 + MTEa LTR MaLR 1 334 -45 1 1138 240 86 0 0 chr3 72516403 72516438 -87083345 + (TTG)n Simple_repeat Simple_repeat 3 37 0 1 1138 466 302 73 133 chr3 72517211 72517462 -87082321 + MTE-int LTR MaLR 249 467 -1113 1 1138 222 37 0 0 chr3 72517462 72517489 -87082294 + (CAAAC)n Simple_repeat Simple_repeat 4 30 0 2 1138 1222 357 61 51 chr3 72517489 72518304 -87081479 + MTE-int LTR MaLR 468 1571 -9 1 1138 256 179 26 0 chr3 72518890 72518968 -87080815 + (CAT)n Simple_repeat Simple_repeat 2 81 0 2 1138 21 0 0 0 chr3 72519378 72519399 -87080384 + AT_rich Low_complexity Low_complexity 1 21 0 2 1138 247 188 0 0 chr3 72521001 72521049 -87078734 - ORR1B1 LTR MaLR 0 394 347 2 1138 2394 160 64 3 chr3 72521049 72521748 -87078035 - Lx4A LINE L1 -179 6879 6138 2 1138 859 170 0 0 chr3 72521751 72521916 -87077867 + Lx4A LINE L1 5972 6136 -922 2 1138 227 250 19 86 chr3 72522701 72522806 -87076977 + RMER1C Other Other 1243 1340 -2 2 1138 202 176 0 38 chr3 72523426 72523479 -87076304 + (CAAA)n Simple_repeat Simple_repeat 3 53 0 2 1138 22 35 0 0 chr3 72524508 72524537 -87075246 + AT_rich Low_complexity Low_complexity 1 29 0 2 1138 926 309 78 35 chr3 72525260 72525440 -87074343 + L1_Mur3 LINE L1 5009 5204 -676 2 1138 1034 281 37 58 chr3 72525440 72525822 -87073961 - ORR1D1 LTR MaLR 0 374 1 2 1138 926 309 78 35 chr3 72525822 72526298 -87073485 + L1_Mur3 LINE L1 5205 5693 -187 2 1138 7325 125 72 46 chr3 72526597 72528108 -87071675 - Lx3_Mus LINE L1 -1 7008 5464 3 1138 405 0 0 0 chr3 72528125 72528170 -87071613 + (TG)n Simple_repeat Simple_repeat 2 46 0 3 1138 309 51 0 0 chr3 72528181 72528220 -87071563 + (TA)n Simple_repeat Simple_repeat 2 40 0 3 1138 3023 26 0 0 chr3 72528430 72528776 -87071007 - ORR1A0 LTR MaLR 0 346 1 3 1138 224 363 10 0 chr3 72528883 72528985 -87070798 + B1F SINE Alu 42 144 -5 3 1138 232 278 14 0 chr3 72528996 72529068 -87070715 + L1M5 LINE L1 4996 5068 -1078 3 1138 1100 268 69 49 chr3 72529284 72529689 -87070094 + Lx6 LINE L1 7042 7454 -6 3 1138 26 0 0 0 chr3 72529692 72529718 -87070065 + AT_rich Low_complexity Low_complexity 1 26 0 3 1138 237 250 56 74 chr3 72529877 72529985 -87069798 - L1MB2 LINE L1 -11 6160 6055 3 1138 2269 195 203 51 chr3 72530243 72530865 -87068918 - RMER6D LTR ERVK -4 716 1 3 1138 546 362 21 42 chr3 72532169 72532457 -87067326 + B4A SINE B4 3 284 -8 4 1138 481 333 63 5 chr3 72532545 72532750 -87067033 + Lx9 LINE L1 7226 7442 -202 4 1138 237 214 135 54 chr3 72533001 72533075 -87066708 + LTR87 LTR ERVL? 44 123 -501 4 1138 23 0 0 0 chr3 72533195 72533218 -87066565 + AT_rich Low_complexity Low_complexity 1 23 0 4 1138 21 0 0 0 chr3 72533561 72533582 -87066201 + AT_rich Low_complexity Low_complexity 1 21 0 4 1138 791 21 10 0 chr3 72533653 72533750 -87066033 + (GAA)n Simple_repeat Simple_repeat 2 99 0 4 1138 247 275 21 62 chr3 72534380 72534477 -87065306 - LTR16E2 LTR ERVL -161 407 315 4 1138 254 183 0 0 chr3 72534865 72534925 -87064858 - Lx9 LINE L1 -148 7496 7437 4 1138 245 98 0 24 chr3 72534985 72535027 -87064756 + (TA)n Simple_repeat Simple_repeat 2 42 0 4 1138 1106 75 0 7 chr3 72535048 72535195 -87064588 + B1_Mm SINE Alu 2 147 0 4 1138 237 98 0 0 chr3 72535199 72535240 -87064543 + (A)n Simple_repeat Simple_repeat 1 41 0 5 1138 527 0 16 0 chr3 72535764 72535827 -87063956 + (TTTTG)n Simple_repeat Simple_repeat 2 65 0 5 1138 256 359 64 6 chr3 72537840 72538011 -87061772 - Lx7 LINE L1 -377 7319 7139 5 1138 22 35 0 0 chr3 72538801 72538830 -87060953 + AT_rich Low_complexity Low_complexity 1 29 0 5 1138 446 352 51 6 chr3 72538934 72539111 -87060672 - B3A SINE B2 -11 187 3 5 1138 526 237 113 0 chr3 72539543 72539720 -87060063 - L1M2 LINE L1 -1357 4786 4590 5 1138 324 0 0 0 chr3 72540022 72540058 -87059725 + (TC)n Simple_repeat Simple_repeat 1 36 0 5 1138 528 68 0 0 chr3 72540058 72540131 -87059652 + (TG)n Simple_repeat Simple_repeat 2 74 0 5 1138 278 301 117 0 chr3 72540142 72540348 -87059435 - L1M2 LINE L1 -1577 4566 4337 5 1138 918 307 23 69 chr3 72541063 72541409 -87058374 - MTE2a LTR MaLR -2 377 48 5 1138 461 50 0 0 chr3 72541843 72541903 -87057880 - U2 snRNA snRNA -128 60 1 5 1138 700 301 135 12 chr3 72543499 72543751 -87056032 - MTE-int LTR MaLR -1266 314 32 6 1138 4413 38 0 0 chr3 72543849 72544374 -87055409 + L1Md_T LINE L1 6058 6582 0 6 1138 268 338 73 121 chr3 72544392 72544665 -87055118 - ORR1E LTR MaLR -55 304 45 6 1138 198 0 0 0 chr3 72544792 72544814 -87054969 + (TTAA)n Simple_repeat Simple_repeat 1 22 0 6 1138 240 248 139 17 chr3 72545188 72545303 -87054480 + Looper DNA PiggyBac 876 1004 -554 6 1138 328 283 149 13 chr3 72547039 72547193 -87052590 - L1MCc LINE L1 -5217 1206 1032 6 1138 22 35 0 0 chr3 72547988 72548017 -87051766 + AT_rich Low_complexity Low_complexity 1 29 0 6 1138 258 143 0 0 chr3 72548097 72548146 -87051637 + (TCCA)n Simple_repeat Simple_repeat 4 52 0 6 1138 1570 261 139 9 chr3 72548163 72548615 -87051168 - Lx6 LINE L1 -177 7283 6773 6 1138 952 384 33 12 chr3 72548716 72549391 -87050392 - Lx8 LINE L1 -157 7316 6628 6 1138 388 322 73 11 chr3 72550837 72550922 -87048861 - Lx7 LINE L1 -389 7307 7215 7 1138 477 34 0 0 chr3 72550922 72550981 -87048802 + (GA)n Simple_repeat Simple_repeat 2 60 0 7 1138 388 322 73 11 chr3 72550981 72551074 -87048709 - Lx7 LINE L1 -482 7214 7118 7 1138 1198 276 86 8 chr3 72551103 72551487 -87048296 + Lx7 LINE L1 6690 7103 -593 7 1138 311 336 35 25 chr3 72551658 72551816 -87047967 + B4 SINE B4 12 162 -130 7 1138 246 32 0 0 chr3 72551912 72551943 -87047840 + (CA)n Simple_repeat Simple_repeat 2 32 0 7 1138 584 286 95 18 chr3 72551988 72552273 -87047510 + L1_Mur3 LINE L1 526 832 -6896 7 1138 1386 233 57 39 chr3 72552439 72552952 -87046831 + L1_Mur3 LINE L1 2960 3481 -2399 7 1138 225 0 0 0 chr3 72552956 72552981 -87046802 + (TAA)n Simple_repeat Simple_repeat 2 26 0 7 1138 670 163 0 0 chr3 72552981 72553079 -87046704 + L1VL2 LINE L1 183 280 -6055 7 1138 9277 99 6 62 chr3 72553076 72553884 -87045899 + L1_Mur1 LINE L1 1791 2599 -3287 7 1138 3456 21 118 0 chr3 72553884 72554309 -87045474 - IAPLTR2_Mm LTR ERVK 0 475 1 7 1138 9277 99 6 62 chr3 72554309 72554884 -87044899 + L1_Mur1 LINE L1 2595 3145 -769 7 1138 1087 109 0 0 chr3 72554884 72555031 -87044752 + B1_Mm SINE Alu 1 147 0 8 1138 9277 115 15 60 chr3 72555031 72555275 -87044508 + L1_Mur1 LINE L1 3146 3335 -2551 7 1138 1036 95 0 33 chr3 72555275 72555427 -87044356 + B1_Mm SINE Alu 1 147 0 8 1138 7330 194 62 50 chr3 72555427 72555804 -87043979 + L1_Mur1 LINE L1 3336 3821 -2065 7 1138 479 257 14 7 chr3 72555813 72555954 -87043829 + Lx7 LINE L1 5587 5728 -1968 8 1138 1761 137 80 0 chr3 72555955 72556254 -87043529 - IAPEY2_LTR LTR ERVK 0 357 35 8 1138 27075 112 19 4 chr3 72556262 72560238 -87039545 - IAPEY3-int LTR ERVK 0 7680 3647 8 1138 2238 117 6 12 chr3 72560230 72560558 -87039225 - IAPEY3-int LTR ERVK -5738 1942 1617 8 1138 10022 108 6 22 chr3 72560541 72562044 -87037739 - IAPEY3-int LTR ERVK -6201 1479 1 8 1138 1727 144 80 0 chr3 72562044 72562343 -87037440 - IAPEY2_LTR LTR ERVK 0 357 35 8 1138 3741 252 39 51 chr3 72562351 72562563 -87037220 + Lx7 LINE L1 5732 5947 -1749 8 1138 5550 156 19 7 chr3 72562563 72563508 -87036275 + RMER17B LTR ERVK 1 956 -2 8 1138 3741 252 39 51 chr3 72563508 72563791 -87035992 + Lx7 LINE L1 5948 6232 -1464 8 1138 6796 76 1 3 chr3 72563791 72564693 -87035090 + L1Md_F2 LINE L1 5680 6579 -3 8 1138 3741 257 99 38 chr3 72564693 72565971 -87033812 + Lx7 LINE L1 6233 7692 -4 8 1138 1095 90 7 0 chr3 72565983 72566128 -87033655 - B1_Mus1 SINE Alu 0 148 3 8 1138 2211 78 0 3 chr3 72566160 72566456 -87033327 - L1_Mus1 LINE L1 0 6567 6273 8 1138 1875 90 0 0 chr3 72566456 72566701 -87033082 + L1_Mus1 LINE L1 6032 6276 -291 8 1138 234 148 0 0 chr3 72567005 72567059 -87032724 + (CAAAAA)n Simple_repeat Simple_repeat 2 55 0 8 1138 1274 250 82 26 chr3 72567144 72567484 -87032299 - MTC LTR MaLR -14 407 47 9 1138 1980 215 46 5 chr3 72567484 72567585 -87032198 + MTC LTR MaLR 1 113 -308 9 1138 4847 51 0 8 chr3 72567585 72568193 -87031590 - L1Md_F2 LINE L1 0 6582 5980 9 1138 1980 215 46 5 chr3 72568193 72568479 -87031304 + MTC LTR MaLR 114 403 -18 9 1138 28 29 0 0 chr3 72568988 72569023 -87030760 + AT_rich Low_complexity Low_complexity 1 35 0 9 1138 689 305 36 40 chr3 72571311 72571612 -87028171 - Lx6 LINE L1 -25 7435 7136 9 1138 22 0 0 0 chr3 72571612 72571634 -87028149 + AT_rich Low_complexity Low_complexity 1 22 0 9 1138 180 97 0 0 chr3 72571634 72571665 -87028118 + (TTTTTG)n Simple_repeat Simple_repeat 6 36 0 9 1138 5342 191 52 106 chr3 72571667 72573027 -87026756 - L1_Mur3 LINE L1 -1411 4469 3177 9 1138 2103 71 3 63 chr3 72573027 72573342 -87026441 - L1_Mus2 LINE L1 0 6566 6271 9 1138 5342 191 52 106 chr3 72573342 72573695 -87026088 - L1_Mur3 LINE L1 -2704 3176 2847 9 1138 4635 251 36 37 chr3 72573698 72576057 -87023726 - Lx5 LINE L1 -1 7057 4730 9 1138 25 0 0 0 chr3 72576430 72576455 -87023328 + AT_rich Low_complexity Low_complexity 1 25 0 1 1138 33030 75 23 23 chr3 72577390 72579039 -87020744 - L1Md_F3 LINE L1 -14 6570 4895 1 1138 229 262 47 37 chr3 72579039 72579146 -87020637 + MER72B LTR ERV1 280 387 -381 1 1138 33030 75 23 23 chr3 72579146 72583583 -87016200 - L1Md_F3 LINE L1 -14 4894 382 1 1138 4162 97 3 9 chr3 72583870 72584454 -87015329 - L1_Mus2 LINE L1 0 6566 5986 1 1138 1829 211 13 10 chr3 72584841 72585234 -87014549 - ORR1B1 LTR MaLR 0 394 1 1 1138 4124 237 80 14 chr3 72585234 72585399 -87014384 - ORR1B1-int LTR MaLR 0 1509 1327 1 1138 185 0 0 39 chr3 72585399 72585425 -87014358 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 1 1138 4124 237 80 14 chr3 72585425 72585469 -87014314 - ORR1B1-int LTR MaLR -183 1326 1288 1 1138 441 0 0 0 chr3 72585469 72585518 -87014265 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 1138 4124 242 83 29 chr3 72585518 72586587 -87013196 - ORR1B1-int LTR MaLR -222 1287 101 1 1138 4962 181 5 57 chr3 72586590 72587641 -87012142 - L1_Mur1 LINE L1 -318 5568 4573 1 1138 531 67 0 0 chr3 72587641 72587721 -87012062 + L1_Mus3 LINE L1 5577 5656 -227 1 1138 393 226 12 0 chr3 72587721 72587805 -87011978 - ORR1B1-int LTR MaLR -1424 85 1 1 1138 1676 202 31 18 chr3 72587807 72588191 -87011592 - ORR1B1 LTR MaLR -3 391 3 1 1138 329 330 39 0 chr3 72588193 72588296 -87011487 - B1F2 SINE Alu -25 124 18 1 1138 970 270 25 4 chr3 72588468 72588743 -87011040 + L1_Mur3 LINE L1 18 298 -7414 1 1138 1264 276 14 3 chr3 72588761 72589052 -87010731 + Lx6 LINE L1 6923 7216 -244 1 1138 21 36 0 0 chr3 72589284 72589312 -87010471 + AT_rich Low_complexity Low_complexity 1 28 0 1 1138 24 0 0 0 chr3 72590180 72590204 -87009579 + AT_rich Low_complexity Low_complexity 1 24 0 1 1138 426 239 0 0 chr3 72590223 72590336 -87009447 + (TA)n Simple_repeat Simple_repeat 2 114 0 1 1138 684 265 20 7 chr3 72590525 72590677 -87009106 - B3 SINE B2 -61 155 2 1 1138 4231 55 0 6 chr3 72590752 72591282 -87008501 + L1Md_F2 LINE L1 6042 6568 -14 1 1138 471 292 16 82 chr3 72591373 72591567 -87008216 - B2_Mm2 SINE B2 -13 182 2 1 1138 857 316 107 20 chr3 72592441 72592786 -87006997 + MTEa LTR MaLR 3 377 -2 1 1138 279 0 0 0 chr3 72592833 72592864 -87006919 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1 1138 1802 105 0 0 chr3 72592873 72593121 -87006662 + Lx LINE L1 6050 6297 -357 1 1138 1291 151 9 9 chr3 72593110 72593337 -87006446 + Lx2 LINE L1 6765 6991 -6 1 1138 22 70 0 0 chr3 72596088 72596131 -87003652 + AT_rich Low_complexity Low_complexity 1 43 0 1 1138 893 263 5 0 chr3 72596139 72596337 -87003446 + B3 SINE B2 15 213 -3 1 1138 249 119 0 0 chr3 72596442 72596484 -87003299 + (TCTA)n Simple_repeat Simple_repeat 1 42 0 1 1138 482 31 0 15 chr3 72596979 72597044 -87002739 + (TA)n Simple_repeat Simple_repeat 1 64 0 1 1138 508 265 64 85 chr3 72597547 72597711 -87002072 + RMER15 LTR ERVL 346 508 -67 1 1138 4939 111 3 0 chr3 72597711 72598423 -87001360 - L1_Mus1 LINE L1 0 6567 5854 1 1138 508 265 64 85 chr3 72598423 72598493 -87001290 + RMER15 LTR ERVL 509 575 0 1 1138 21 0 0 0 chr3 72598557 72598578 -87001205 + AT_rich Low_complexity Low_complexity 1 21 0 1 1138 669 354 32 20 chr3 72598610 72598956 -87000827 + Lx8 LINE L1 6988 7337 -136 1 1138 313 263 59 20 chr3 72599141 72599242 -87000541 + L1_Mur1 LINE L1 10 114 -6870 1 1138 799 116 0 8 chr3 72599250 72599380 -87000403 - L1_Mm LINE L1 -1558 4325 4197 1 1138 737 91 0 0 chr3 72599380 72599490 -87000293 + L1_Mus2 LINE L1 6457 6566 0 1 1138 8590 181 44 51 chr3 72599517 72600804 -86998979 + L1_Mur1 LINE L1 110 1642 -4238 1 1138 1422 99 25 2 chr3 72600804 72601038 -86998745 - MTA_Mm LTR MaLR 0 396 1 1 1138 8590 181 44 51 chr3 72601038 72603070 -86996713 + L1_Mur1 LINE L1 1643 4065 -1815 1 1138 377 391 42 28 chr3 72603105 72603447 -86996336 - Lx8 LINE L1 -246 7227 6863 1 1138 360 64 0 0 chr3 72603475 72603522 -86996261 + (GGA)n Simple_repeat Simple_repeat 2 48 0 1 1138 1332 315 89 62 chr3 72603536 72604570 -86995213 - Lx8 LINE L1 -616 6857 5796 1 1138 1439 271 62 88 chr3 72604556 72605592 -86994191 + Lx8 LINE L1 4573 5581 -299 1 1138 257 270 2 0 chr3 72606022 72606103 -86993680 + Lx8 LINE L1 5602 5704 -1769 1 1138 186 43 0 0 chr3 72606594 72606617 -86993166 + (TC)n Simple_repeat Simple_repeat 2 24 0 1 1138 243 125 0 0 chr3 72606617 72606656 -86993127 + (TG)n Simple_repeat Simple_repeat 1 40 0 1 1138 277 145 32 0 chr3 72606819 72606881 -86992902 + (TA)n Simple_repeat Simple_repeat 1 64 0 1 1138 2269 228 99 11 chr3 72607139 72607786 -86991997 + Lx7 LINE L1 572 1275 -6453 1 1138 4274 231 95 43 chr3 72608187 72608927 -86990856 + Lx7 LINE L1 1265 2056 -3824 1 1138 368 55 0 18 chr3 72608927 72608983 -86990800 + (CATA)n Simple_repeat Simple_repeat 4 58 0 1 1138 558 0 0 0 chr3 72608988 72609050 -86990733 + (TC)n Simple_repeat Simple_repeat 2 63 0 1 1138 288 0 0 0 chr3 72609052 72609084 -86990699 + (CA)n Simple_repeat Simple_repeat 1 32 0 1 1138 4274 231 95 43 chr3 72609084 72609982 -86989801 + Lx7 LINE L1 2062 2997 -2883 1 1138 10113 107 34 27 chr3 72609989 72612634 -86987149 + L1VL4 LINE L1 549 3025 -2861 1 1138 513 0 0 0 chr3 72612634 72612691 -86987092 + (TG)n Simple_repeat Simple_repeat 2 58 0 1 1138 9387 169 26 114 chr3 72612691 72612705 -86987078 + L1VL4 LINE L1 3026 3026 -2860 1 1138 2306 71 10 0 chr3 72612705 72613013 -86986770 + L1Md_F2 LINE L1 6272 6582 0 1 142 9387 96 20 8 chr3 72613013 72613911 -86985872 + L1VL4 LINE L1 3026 3912 -2 1 1139 2364 197 84 13 chr3 72613914 72614614 -86985169 + Lx7 LINE L1 2994 3743 -2137 1 1139 6200 225 26 57 chr3 72614610 72615753 -86984030 + Lx7 LINE L1 4140 5255 -625 1 1139 993 110 0 0 chr3 72615753 72615889 -86983894 + B1_Mus1 SINE Alu 1 136 -12 1 1139 246 32 0 0 chr3 72615889 72615920 -86983863 + (CAAA)n Simple_repeat Simple_repeat 3 33 0 1 1139 6200 225 26 57 chr3 72615920 72615968 -86983815 + Lx7 LINE L1 5256 5300 -580 1 1139 2854 76 8 10 chr3 72615968 72616365 -86983418 + MTA_Mm LTR MaLR 1 396 0 1 1139 6200 225 26 57 chr3 72616365 72616809 -86982974 + Lx7 LINE L1 5301 5736 -144 1 1139 4649 64 32 26 chr3 72616809 72617464 -86982319 + L1_Mus1 LINE L1 5909 6567 0 1 1139 6200 252 22 36 chr3 72617464 72618628 -86981155 + Lx7 LINE L1 5737 6880 -816 1 1139 242 331 41 24 chr3 72618645 72618815 -86980968 + Lx7 LINE L1 7206 7378 -318 1 1139 459 0 0 0 chr3 72618821 72618872 -86980911 + (TC)n Simple_repeat Simple_repeat 2 52 0 1 1139 654 13 0 0 chr3 72618872 72618946 -86980837 + (TG)n Simple_repeat Simple_repeat 2 76 0 1 1139 218 149 27 95 chr3 72618960 72619034 -86980749 + T-rich Low_complexity Low_complexity 5 73 0 1 1139 207 0 0 0 chr3 72619034 72619057 -86980726 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1 1139 1081 91 0 0 chr3 72619069 72619212 -86980571 - B1_Mus1 SINE Alu -5 143 1 1 1139 7371 88 2 5 chr3 72619222 72620617 -86979166 - L1_Mus2 LINE L1 0 6566 5174 1 1139 234 232 14 55 chr3 72620645 72620718 -86979065 - L1Md_F LINE L1 -5776 743 674 1 1139 510 243 66 122 chr3 72620775 72620972 -86978811 - L1VL1 LINE L1 -6030 392 207 1 1139 462 284 125 39 chr3 72621538 72621770 -86978013 - Lx6 LINE L1 -749 6301 6022 1 1139 1455 173 14 97 chr3 72621778 72622220 -86977563 - L1_Mur3 LINE L1 -2740 3140 2736 1 1139 212 239 0 0 chr3 72623439 72623485 -86976298 + CT-rich Low_complexity Low_complexity 1 46 0 1 1139 1604 232 52 5 chr3 72624080 72624466 -86975317 - MTC LTR MaLR -17 404 1 1 1139 468 105 0 0 chr3 72625210 72625286 -86974497 + (CA)n Simple_repeat Simple_repeat 2 77 0 1 1139 580 318 49 81 chr3 72627039 72627347 -86972436 - MLT1D LTR MaLR -114 391 94 1 1139 23 0 0 0 chr3 72627391 72627414 -86972369 + AT_rich Low_complexity Low_complexity 1 23 0 1 1139 2804 73 5 3 chr3 72627435 72627822 -86971961 + RLTR10 LTR ERVK 1 388 -2 1 1139 201 200 53 53 chr3 72628344 72628439 -86971344 + A-rich Low_complexity Low_complexity 4 98 0 1 1139 968 288 65 21 chr3 72628676 72629013 -86970770 - RMER15 LTR ERVL -3 572 221 1 1139 271 275 0 0 chr3 72629287 72629367 -86970416 + L1_Mur2 LINE L1 4903 4982 -895 1 1139 43 0 0 0 chr3 72629434 72629477 -86970306 + AT_rich Low_complexity Low_complexity 1 43 0 1 1139 262 273 30 0 chr3 72629517 72629583 -86970200 - L1M2 LINE L1 -1202 4941 4874 1 1139 1044 232 67 22 chr3 72629584 72629853 -86969930 - RMER13B LTR ERVK 0 908 628 1 1139 2577 158 32 18 chr3 72629853 72630291 -86969492 - RMER13B LTR ERVK -464 444 1 1 1139 5807 69 1 4 chr3 72630386 72631138 -86968645 + L1Md_F2 LINE L1 5821 6570 -12 1 1139 201 180 0 0 chr3 72631231 72631281 -86968502 + T-rich Low_complexity Low_complexity 4 53 0 1 1139 730 262 7 0 chr3 72631288 72631433 -86968350 - B1_Mur2 SINE Alu -2 147 2 1 1139 21 36 0 0 chr3 72631525 72631553 -86968230 + AT_rich Low_complexity Low_complexity 1 28 0 1 1139 2877 181 63 12 chr3 72631704 72632273 -86967510 - Lx4B LINE L1 -4 7054 6457 1 1139 1305 180 0 68 chr3 72632267 72632349 -86967434 - L1_Mur1 LINE L1 -3166 2720 2639 1 1139 3649 166 15 0 chr3 72632349 72632953 -86966830 + Lx3B LINE L1 6358 6970 -3 1 1139 1305 180 0 68 chr3 72632953 72633150 -86966633 - L1_Mur1 LINE L1 -3248 2638 2460 1 1139 416 297 122 42 chr3 72633498 72634317 -86965466 + L1M3 LINE L1 2476 3360 -2780 1 1139 2276 62 6 50 chr3 72634444 72634781 -86965002 - RLTRETN_Mm LTR ERVK 0 322 1 1 1139 397 274 98 57 chr3 72634989 72635343 -86964440 + L1M3 LINE L1 4312 4691 -1452 1 1139 2780 90 5 12 chr3 72635373 72635777 -86964006 + L1Md_F2 LINE L1 6182 6582 0 1 1139 411 239 0 0 chr3 72636020 72636129 -86963654 + GA-rich Low_complexity Low_complexity 3 111 0 1 1139 412 255 42 13 chr3 72636143 72636321 -86963462 + L1M3 LINE L1 5284 5481 -819 1 1139 261 0 0 0 chr3 72636434 72636463 -86963320 + (A)n Simple_repeat Simple_repeat 1 29 0 1 1139 249 163 0 0 chr3 72636555 72636604 -86963179 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 1139 220 362 32 11 chr3 72636694 72636789 -86962994 + PB1D7 SINE Alu 11 107 -13 1 1139 4120 67 6 15 chr3 72636789 72637336 -86962447 + L1Md_F2 LINE L1 5849 6390 -192 1 1139 6658 82 7 3 chr3 72637397 72638287 -86961496 - RLTR13B1 LTR ERVK 0 893 1 1 1139 506 383 64 11 chr3 72638292 72638556 -86961227 + B4A SINE B4 8 285 -7 1 1139 301 283 20 0 chr3 72638588 72638687 -86961096 + L1MA6 LINE L1 5838 5938 -362 1 1139 7472 88 15 5 chr3 72638735 72639868 -86959915 + L1_Mus3 LINE L1 5485 6634 -4 1 1139 4391 74 0 54 chr3 72639969 72640613 -86959170 + L1Md_F2 LINE L1 4977 5585 -298 1 1139 7833 53 9 4 chr3 72640614 72641598 -86958185 + L1Md_F2 LINE L1 5587 6575 -7 1 1139 21 89 0 0 chr3 72641614 72641670 -86958113 + AT_rich Low_complexity Low_complexity 1 56 0 1 1139 212 200 21 86 chr3 72641690 72641783 -86958000 + A-rich Low_complexity Low_complexity 5 91 0 1 1139 263 271 137 9 chr3 72642052 72642279 -86957504 + L1MB4 LINE L1 4788 5043 -1097 1 1139 250 283 8 66 chr3 72642534 72642655 -86957128 + L1MB4 LINE L1 5362 5475 -816 1 1139 254 304 9 29 chr3 72642678 72642783 -86957000 + GA-rich Low_complexity Low_complexity 3 105 0 1 1139 260 290 117 69 chr3 72642786 72643060 -86956723 + L1MB4 LINE L1 5489 5775 -393 1 1139 252 0 0 0 chr3 72643130 72643158 -86956625 + (TC)n Simple_repeat Simple_repeat 1 28 0 1 1139 270 56 0 0 chr3 72643158 72643193 -86956590 + (CA)n Simple_repeat Simple_repeat 1 36 0 1 1139 239 357 25 42 chr3 72643258 72643378 -86956405 + PB1D7 SINE Alu 3 120 0 1 1139 345 254 26 0 chr3 72643386 72643500 -86956283 + L1MB4 LINE L1 5791 5907 -273 1 1139 35 0 0 0 chr3 72643991 72644026 -86955757 + AT_rich Low_complexity Low_complexity 1 35 0 2 1139 746 212 14 0 chr3 72645538 72645684 -86954099 + B1_Mus1 SINE Alu 1 148 0 2 1139 35 71 0 0 chr3 72645698 72645768 -86954015 + AT_rich Low_complexity Low_complexity 1 70 0 2 1139 634 351 83 24 chr3 72645873 72646137 -86953646 + Lx8 LINE L1 6897 7177 -296 2 1139 507 17 0 0 chr3 72646137 72646197 -86953586 + (CA)n Simple_repeat Simple_repeat 1 60 0 2 1139 634 351 83 24 chr3 72646197 72646355 -86953428 + Lx8 LINE L1 7178 7343 -130 2 1139 2305 186 42 56 chr3 72646858 72647075 -86952708 - RLTR31_Mm LTR ERVK 0 561 355 2 1139 1241 115 19 9 chr3 72647075 72647286 -86952497 - L1_Mus3 LINE L1 -1 6637 6425 2 1139 2305 186 42 56 chr3 72647286 72647637 -86952146 - RLTR31_Mm LTR ERVK -207 354 2 2 1139 8845 222 26 5 chr3 72647641 72648743 -86951040 + L1_Mur3 LINE L1 932 2053 -3824 2 1139 342 0 0 0 chr3 72648743 72648781 -86951002 + (CA)n Simple_repeat Simple_repeat 2 39 0 2 1139 8845 203 29 6 chr3 72648781 72650015 -86949768 + L1_Mur3 LINE L1 2054 3320 -2557 2 1139 2120 155 167 0 chr3 72650020 72650439 -86949344 + L1_Mur3 LINE L1 5096 5584 -293 2 1139 1512 289 31 12 chr3 72650447 72650934 -86948849 + Lx5 LINE L1 5907 6402 -648 2 1139 24 67 0 0 chr3 72651018 72651063 -86948720 + AT_rich Low_complexity Low_complexity 1 45 0 2 1139 22 35 0 0 chr3 72651202 72651231 -86948552 + AT_rich Low_complexity Low_complexity 1 29 0 2 1139 340 243 156 18 chr3 72651236 72651345 -86948438 - B1_Mur2 SINE Alu -1 149 25 2 1139 1470 119 21 3 chr3 72651481 72651719 -86948064 + Lx2 LINE L1 5783 6021 -976 2 1139 4978 125 54 9 chr3 72651719 72652533 -86947250 + Lx2 LINE L1 6147 6997 0 2 1139 25 0 0 0 chr3 72652533 72652558 -86947225 + AT_rich Low_complexity Low_complexity 1 25 0 2 1139 311 311 9 97 chr3 72652674 72652788 -86946995 - B2_Mm2 SINE B2 -75 120 17 2 1139 483 366 78 40 chr3 72652770 72653066 -86946717 + MTD LTR MaLR 113 419 0 2 1139 189 74 0 0 chr3 72653762 72653789 -86945994 + (CA)n Simple_repeat Simple_repeat 2 28 0 2 1139 43 0 0 0 chr3 72653948 72653991 -86945792 + AT_rich Low_complexity Low_complexity 1 43 0 2 1139 435 322 114 39 chr3 72654145 72654185 -86945598 + MTC LTR MaLR 22 73 -306 2 1139 1091 109 0 0 chr3 72654185 72654332 -86945451 - B1_Mus1 SINE Alu 0 148 2 2 1139 1317 209 89 0 chr3 72654332 72654624 -86945159 + MTC LTR MaLR 104 421 0 2 1139 2927 170 10 23 chr3 72655303 72655822 -86943961 + Lx4A LINE L1 6538 7049 -9 2 1139 21 36 0 0 chr3 72655901 72655929 -86943854 + AT_rich Low_complexity Low_complexity 1 28 0 2 1139 32 86 0 0 chr3 72656108 72656189 -86943594 + AT_rich Low_complexity Low_complexity 1 81 0 2 1139 549 0 0 0 chr3 72657271 72657332 -86942451 + (TC)n Simple_repeat Simple_repeat 1 61 0 2 1139 297 161 0 0 chr3 72657332 72657382 -86942401 + (CA)n Simple_repeat Simple_repeat 1 50 0 2 1139 4903 174 36 6 chr3 72658109 72659043 -86940740 - Lx LINE L1 0 6654 5693 2 1139 23 33 0 0 chr3 72659800 72659830 -86939953 + AT_rich Low_complexity Low_complexity 1 30 0 2 1139 278 206 15 0 chr3 72660351 72660419 -86939364 + (TA)n Simple_repeat Simple_repeat 2 70 0 2 1139 595 302 92 30 chr3 72660859 72661163 -86938620 - RMER5 LTR ERV1 -11 523 201 2 1139 342 136 0 36 chr3 72661441 72661525 -86938258 + (TG)n Simple_repeat Simple_repeat 2 82 0 2 1139 226 239 44 15 chr3 72662336 72662404 -86937379 + MLT1E3 LTR MaLR 554 623 -1 2 1139 325 400 109 18 chr3 72662808 72663083 -86936700 + BLACKJACK DNA AcHobo 223 522 -2422 2 1139 273 296 93 75 chr3 72663250 72663571 -86936212 + BLACKJACK DNA AcHobo 2173 2499 -445 2 1139 292 251 33 0 chr3 72663643 72663734 -86936049 + MLT2C1 LTR ERVL 37 130 -267 2 1139 310 357 58 18 chr3 72663913 72664084 -86935699 + MLT2C1 LTR ERVL 121 298 -99 2 1139 300 358 80 30 chr3 72664543 72664805 -86934978 + L1M5 LINE L1 3932 4206 -1940 2 1139 1340 227 55 29 chr3 72664808 72665153 -86934630 - ORR1D1 LTR MaLR -19 355 2 2 1139 264 251 114 30 chr3 72665233 72665434 -86934349 + L1MC LINE L1 4287 4504 -1642 2 1139 1563 217 57 59 chr3 72665672 72666112 -86933671 + MYSERV16_I-int LTR ERVK 747 1185 -1141 2 1139 1316 53 0 0 chr3 72666112 72666283 -86933500 - L1_Mus1 LINE L1 0 6567 6397 2 1139 2632 54 9 0 chr3 72666283 72666619 -86933164 + L1_Mus1 LINE L1 5794 6132 -435 2 1139 883 79 7 28 chr3 72666619 72666762 -86933021 + MYSERV16_I-int LTR ERVK 1177 1316 -1010 2 1139 3944 31 31 0 chr3 72666762 72667239 -86932544 + L1Md_F2 LINE L1 6091 6582 0 2 1139 746 144 8 0 chr3 72667271 72667403 -86932380 + MYSERV16_I-int LTR ERVK 2038 2170 -156 2 1139 14637 136 12 8 chr3 72667424 72670275 -86929508 + L1VL4 LINE L1 413 3277 -282 2 1139 680 256 159 0 chr3 72670279 72670486 -86929297 + Lx5 LINE L1 6166 6405 -645 2 1139 197 33 33 0 chr3 72670487 72670517 -86929266 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2 1139 8661 108 13 6 chr3 72670530 72671335 -86928448 - Lx3_Mus LINE L1 -104 6905 6101 2 1139 318 50 0 0 chr3 72671335 72671375 -86928408 + (CA)n Simple_repeat Simple_repeat 2 41 0 2 1139 8661 108 13 6 chr3 72671375 72671824 -86927959 - Lx3_Mus LINE L1 -909 6100 5644 2 1139 4086 157 70 29 chr3 72671824 72672666 -86927117 + RLTR13D6 LTR ERVK 26 902 0 2 1139 20179 106 8 13 chr3 72672666 72675189 -86924594 - Lx3_Mus LINE L1 -300 5586 3072 2 1139 298 0 23 23 chr3 72675189 72675232 -86924551 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 2 1139 20179 106 8 13 chr3 72675232 72675825 -86923958 - Lx3_Mus LINE L1 -2815 3071 2486 2 1139 3101 160 86 24 chr3 72675825 72676955 -86922828 - Lx3_Mus LINE L1 -4309 1577 80 2 1139 1910 277 104 80 chr3 72676971 72677638 -86922145 + Lx6 LINE L1 6614 7323 -137 2 1139 1025 89 0 0 chr3 72677638 72677773 -86922010 - B1_Mus1 SINE Alu -12 136 2 2 1139 1910 277 104 80 chr3 72677773 72677903 -86921880 + Lx6 LINE L1 7324 7430 -30 2 1139 229 295 23 69 chr3 72678165 72678231 -86921552 + Lx9 LINE L1 7355 7420 -224 2 1139 215 31 0 30 chr3 72678231 72678264 -86921519 + (TA)n Simple_repeat Simple_repeat 2 33 0 2 1139 229 295 23 69 chr3 72678264 72678328 -86921455 + Lx9 LINE L1 7421 7479 -165 2 1139 290 87 22 0 chr3 72678636 72678682 -86921101 + (GA)n Simple_repeat Simple_repeat 2 48 0 2 1139 268 379 50 7 chr3 72679799 72679940 -86919843 + B1F2 SINE Alu 2 148 -1 2 1139 658 61 0 0 chr3 72680021 72680103 -86919680 + L1_Mus4 LINE L1 6251 6332 -304 2 1139 2740 74 48 0 chr3 72680103 72680496 -86919287 - BGLII LTR ERVK -9 412 1 2 1139 530 133 0 12 chr3 72680496 72680580 -86919203 - RMER6D LTR ERVK -149 541 459 2 1139 3309 145 18 9 chr3 72680596 72681160 -86918623 - RLTR1D LTR ERV1 -16 589 21 2 1139 751 268 138 48 chr3 72681113 72681571 -86918212 - RMER6D LTR ERVK -219 501 3 2 1139 222 163 0 0 chr3 72681643 72681662 -86918121 + A-rich Low_complexity Low_complexity 1 19 0 2 1139 1154 82 0 0 chr3 72681662 72681809 -86917974 + B1_Mm SINE Alu 1 147 0 2 1139 222 163 0 0 chr3 72681809 72681832 -86917951 + A-rich Low_complexity Low_complexity 20 42 0 2 1139 34 42 0 0 chr3 72681905 72681953 -86917830 + AT_rich Low_complexity Low_complexity 1 48 0 2 1139 751 306 29 26 chr3 72682087 72682475 -86917308 + Lx9 LINE L1 5486 5909 -1735 2 1139 300 172 0 0 chr3 72682478 72682536 -86917247 + T-rich Low_complexity Low_complexity 1 58 0 2 1139 1152 69 0 0 chr3 72682536 72682681 -86917102 - B1_Mus2 SINE Alu -1 146 2 2 1139 424 32 16 16 chr3 72683002 72683065 -86916718 + (TA)n Simple_repeat Simple_repeat 2 64 0 2 1139 489 278 0 43 chr3 72683643 72683827 -86915956 + (TATG)n Simple_repeat Simple_repeat 2 177 0 2 1139 741 87 0 0 chr3 72684201 72684316 -86915467 + L1_Mus1 LINE L1 6453 6567 0 2 1139 1367 50 0 11 chr3 72684351 72684532 -86915251 + (GAAA)n Simple_repeat Simple_repeat 1 179 0 2 1139 1809 161 58 9 chr3 72685283 72685610 -86914173 + Lx3C LINE L1 6632 6974 -2 2 1139 335 321 17 26 chr3 72685857 72685972 -86913811 + MTE2b LTR MaLR 1 114 -265 2 1139 327 382 105 35 chr3 72686614 72686785 -86912998 + B3 SINE B2 7 189 -27 2 1139 980 278 130 28 chr3 72687797 72688189 -86911594 + Lx8 LINE L1 6791 7222 -251 2 1139 912 79 0 0 chr3 72688262 72688388 -86911395 + (GGAA)n Simple_repeat Simple_repeat 4 129 0 2 1139 219 146 0 0 chr3 72688474 72688515 -86911268 + (CATA)n Simple_repeat Simple_repeat 4 44 0 2 1139 2133 215 80 13 chr3 72688530 72689005 -86910778 + Lx6 LINE L1 6065 6571 -889 2 1139 983 141 0 7 chr3 72689005 72689155 -86910628 + B2_Mm2 SINE B2 21 169 -26 2 1139 2760 229 73 5 chr3 72689189 72689850 -86909933 + Lx6 LINE L1 6570 7541 -155 2 1139 6652 152 31 6 chr3 72690169 72692036 -86907747 + Lx LINE L1 4732 6650 -4 2 1139 184 228 0 109 chr3 72692245 72692309 -86907474 - L3 LINE CR1 -1647 2842 2786 2 1139 597 299 35 56 chr3 72693152 72693439 -86906344 - MTE2a LTR MaLR -63 316 36 2 1139 444 215 193 14 chr3 72693466 72693678 -86906105 - Lx9 LINE L1 -5 7639 7390 2 1139 207 263 0 0 chr3 72696309 72696366 -86903417 + (TATG)n Simple_repeat Simple_repeat 4 60 0 2 1139 294 333 39 70 chr3 72696395 72696524 -86903259 - B4 SINE B4 -73 219 95 2 1139 275 267 17 0 chr3 72696603 72696663 -86903120 - B4 SINE B4 -230 62 2 2 1139 36333 60 5 12 chr3 72697199 72702775 -86897008 + L1Md_T LINE L1 99 5586 -297 2 1139 8044 53 0 0 chr3 72702775 72703771 -86896012 + L1Md_T LINE L1 5587 6582 0 2 1139 362 311 56 53 chr3 72704039 72704297 -86895486 - RLTR12B LTR ERVK -305 263 8 2 1139 531 0 0 0 chr3 72705625 72705684 -86894099 + (CA)n Simple_repeat Simple_repeat 2 60 0 2 1139 396 0 0 0 chr3 72705684 72705727 -86894056 + (TA)n Simple_repeat Simple_repeat 2 45 0 2 1139 232 288 201 0 chr3 72706533 72706672 -86893111 + L1MC1 LINE L1 6122 6288 -45 2 1139 450 299 56 37 chr3 72706722 72706937 -86892846 + ID_B1 SINE B4 2 220 -4 2 1139 306 0 0 0 chr3 72708091 72708125 -86891658 + (CA)n Simple_repeat Simple_repeat 2 35 0 2 1139 186 128 0 0 chr3 72708500 72708539 -86891244 + (T)n Simple_repeat Simple_repeat 1 39 0 2 1139 1743 143 20 7 chr3 72708636 72708932 -86890851 + RMER17C-int LTR ERVK 2931 3230 -8 2 1139 1105 186 0 43 chr3 72708934 72709215 -86890568 + RMER17C LTR ERVK 7 275 -135 2 1139 180 0 0 0 chr3 72710004 72710024 -86889759 + (T)n Simple_repeat Simple_repeat 1 20 0 2 1139 785 306 79 30 chr3 72710159 72710588 -86889195 - Lx8 LINE L1 -130 7343 6890 2 1139 28 0 0 0 chr3 72710626 72710654 -86889129 + AT_rich Low_complexity Low_complexity 1 28 0 2 1139 21 82 0 0 chr3 72711334 72711383 -86888400 + AT_rich Low_complexity Low_complexity 1 49 0 2 1139 1275 7 0 0 chr3 72711785 72711929 -86887854 + (CATATA)n Simple_repeat Simple_repeat 1 144 0 2 1139 25 75 0 0 chr3 72713125 72713178 -86886605 + AT_rich Low_complexity Low_complexity 1 53 0 2 1139 1272 87 5 26 chr3 72713349 72713538 -86886245 + B2_Mm1t SINE B2 1 185 -8 2 1139 27 29 0 0 chr3 72713622 72713656 -86886127 + AT_rich Low_complexity Low_complexity 1 34 0 2 1139 326 323 0 0 chr3 72714490 72714583 -86885200 - B1_Mus2 SINE Alu -5 142 50 3 1139 225 305 71 40 chr3 72714529 72714628 -86885155 - MT2B LTR ERVL -343 258 157 3 1139 562 156 0 77 chr3 72715271 72715465 -86884318 + (TA)n Simple_repeat Simple_repeat 1 179 0 3 1139 523 357 14 14 chr3 72716423 72716598 -86883185 - B3A SINE B2 -37 179 6 3 1139 21 57 0 0 chr3 72716837 72716872 -86882911 + AT_rich Low_complexity Low_complexity 1 35 0 3 1139 450 0 0 0 chr3 72718292 72718342 -86881441 + (TA)n Simple_repeat Simple_repeat 2 51 0 3 1139 252 371 0 16 chr3 72718937 72719063 -86880720 + Lx8 LINE L1 7107 7230 -243 3 1139 5073 7 0 0 chr3 72719097 72719665 -86880118 - L1Md_A LINE L1 0 6582 6015 3 1139 5601 6 2 0 chr3 72719665 72720295 -86879488 + L1Md_A LINE L1 531 1161 -5563 3 1139 760 280 73 37 chr3 72720452 72720843 -86878940 - RMER10A LTR ERVL -2 440 1 3 1139 26 50 0 0 chr3 72721550 72721590 -86878193 + AT_rich Low_complexity Low_complexity 1 40 0 3 1139 28 0 0 0 chr3 72722337 72722365 -86877418 + AT_rich Low_complexity Low_complexity 1 28 0 3 1139 198 0 0 0 chr3 72723184 72723206 -86876577 + (TG)n Simple_repeat Simple_repeat 1 22 0 3 1139 30 0 0 0 chr3 72723350 72723380 -86876403 + AT_rich Low_complexity Low_complexity 1 30 0 3 1139 333 0 0 0 chr3 72724264 72724301 -86875482 + (TA)n Simple_repeat Simple_repeat 2 38 0 3 1139 23 0 0 0 chr3 72727175 72727198 -86872585 + AT_rich Low_complexity Low_complexity 1 23 0 3 1139 484 30 15 0 chr3 72728081 72728148 -86871635 - L1Md_T LINE L1 0 6582 6515 3 1139 25 65 0 0 chr3 72728184 72728230 -86871553 + AT_rich Low_complexity Low_complexity 1 46 0 3 1139 1593 217 128 18 chr3 72728237 72728692 -86871091 - RLTR16 LTR ERVK 0 505 1 3 1139 281 110 24 24 chr3 72729158 72729242 -86870541 + A-rich Low_complexity Low_complexity 2 85 0 3 1139 611 308 15 5 chr3 72730635 72730837 -86868946 + B3 SINE B2 3 206 -10 3 1139 31 26 0 0 chr3 72732246 72732284 -86867499 + AT_rich Low_complexity Low_complexity 1 38 0 3 1139 2122 201 79 11 chr3 72733576 72734184 -86865599 + RMER6D LTR ERVK 1 717 -3 3 1139 993 205 159 17 chr3 72734219 72734521 -86865262 + Lx9 LINE L1 7285 7629 -15 3 1139 807 171 91 0 chr3 72735419 72735595 -86864188 - B2_Mm2 SINE B2 -2 193 2 3 1139 1801 96 37 4 chr3 72736302 72736573 -86863210 - L1_Mus2 LINE L1 -2 6564 6285 3 1139 1586 39 0 7 chr3 72736573 72736796 -86862987 + L1_Mus2 LINE L1 5623 5836 -731 3 1139 505 325 48 15 chr3 72736807 72737013 -86862770 + B3 SINE B2 4 216 0 3 1139 1831 197 62 17 chr3 72737105 72737508 -86862275 + MTC LTR MaLR 1 421 0 3 1139 21 0 0 0 chr3 72737536 72737557 -86862226 + AT_rich Low_complexity Low_complexity 1 21 0 3 1139 29 60 0 0 chr3 72738132 72738182 -86861601 + AT_rich Low_complexity Low_complexity 1 50 0 3 1139 25 51 0 0 chr3 72738201 72738240 -86861543 + AT_rich Low_complexity Low_complexity 1 39 0 3 1139 251 247 22 22 chr3 72738942 72739033 -86860750 + L1MA6 LINE L1 6203 6293 -7 3 1139 278 244 8 0 chr3 72739652 72739771 -86860012 + (TA)n Simple_repeat Simple_repeat 2 121 0 3 1139 3553 109 31 9 chr3 72740185 72740741 -86859042 - Lx LINE L1 0 6654 6087 3 1139 255 203 0 0 chr3 72741958 72742022 -86857761 + (TA)n Simple_repeat Simple_repeat 2 65 0 3 1139 207 0 0 0 chr3 72742111 72742134 -86857649 + (TG)n Simple_repeat Simple_repeat 1 23 0 3 1139 1280 137 1 9 chr3 72744154 72744386 -86855397 + L1_Mus2 LINE L1 6324 6600 -38 3 1139 1287 40 0 17 chr3 72744386 72744563 -86855220 + L1Md_F3 LINE L1 6397 6570 -14 3 1140 180 0 0 0 chr3 72745928 72745948 -86853835 + (TG)n Simple_repeat Simple_repeat 1 20 0 3 1140 564 315 88 7 chr3 72746151 72746423 -86853360 + Lx8 LINE L1 7179 7472 -1 3 1140 448 31 15 0 chr3 72746529 72746594 -86853189 + L1_Mus2 LINE L1 6500 6565 -1 3 1140 22 35 0 0 chr3 72746597 72746626 -86853157 + AT_rich Low_complexity Low_complexity 1 29 0 3 1140 239 161 32 16 chr3 72746793 72746856 -86852927 + T-rich Low_complexity Low_complexity 2 65 0 3 1140 23 78 0 0 chr3 72748192 72748243 -86851540 + AT_rich Low_complexity Low_complexity 1 51 0 3 1140 243 146 0 0 chr3 72748334 72748375 -86851408 + (TTA)n Simple_repeat Simple_repeat 1 41 0 3 1140 189 0 0 0 chr3 72749240 72749261 -86850522 + (CAAAA)n Simple_repeat Simple_repeat 1 21 0 3 1140 599 279 25 6 chr3 72749558 72749720 -86850063 + B4A SINE B4 1 165 -127 3 1140 21 36 0 0 chr3 72750429 72750457 -86849326 + AT_rich Low_complexity Low_complexity 1 28 0 3 1140 201 175 0 0 chr3 72750844 72750884 -86848899 + (TA)n Simple_repeat Simple_repeat 2 41 0 3 1140 204 40 0 0 chr3 72751244 72751269 -86848514 + (TG)n Simple_repeat Simple_repeat 1 25 0 3 1140 192 322 80 11 chr3 72751846 72751934 -86847849 - MIRb SINE MIR -46 222 129 3 1140 333 0 0 0 chr3 72752460 72752497 -86847286 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 3 1140 255 291 135 48 chr3 72752608 72752888 -86846895 + RSINE1 SINE B4 2 282 -10 3 1140 579 40 0 0 chr3 72753277 72753351 -86846432 + (CA)n Simple_repeat Simple_repeat 2 75 0 3 1140 220 337 72 0 chr3 72753909 72753992 -86845791 + PB1D7 SINE Alu 26 114 -6 3 1140 648 26 0 0 chr3 72754240 72754318 -86845465 + (TG)n Simple_repeat Simple_repeat 1 78 0 3 1140 902 304 41 63 chr3 72754421 72754912 -86844871 + Lx9 LINE L1 6948 7427 -217 3 1140 444 19 0 0 chr3 72754940 72754993 -86844790 + (TG)n Simple_repeat Simple_repeat 2 54 0 3 1140 332 185 139 0 chr3 72755183 72755291 -86844492 + Lx9 LINE L1 7522 7644 0 3 1140 270 0 0 0 chr3 72757440 72757470 -86842313 + (CA)n Simple_repeat Simple_repeat 2 31 0 3 1140 207 0 0 0 chr3 72758149 72758172 -86841611 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 3 1140 864 321 46 58 chr3 72758646 72758933 -86840850 + Lx9 LINE L1 5160 5443 -437 3 1140 525 299 34 5 chr3 72758933 72759141 -86840642 + B3 SINE B2 2 215 -1 3 1140 864 321 46 57 chr3 72759141 72759618 -86840165 + Lx9 LINE L1 5444 5912 -1732 3 1140 710 23 0 11 chr3 72760226 72760315 -86839468 + (GAAA)n Simple_repeat Simple_repeat 2 89 0 3 1140 1350 118 73 50 chr3 72760887 72761146 -86838637 - L1_Mus2 LINE L1 0 6566 6302 3 1140 26 0 0 0 chr3 72761358 72761384 -86838399 + AT_rich Low_complexity Low_complexity 1 26 0 3 1140 302 233 96 15 chr3 72761402 72761537 -86838246 - Lx9 LINE L1 -17 7627 7482 3 1140 29 28 0 0 chr3 72762493 72762529 -86837254 + AT_rich Low_complexity Low_complexity 1 36 0 3 1140 730 89 186 8 chr3 72762869 72762993 -86836790 - B1_Mus1 SINE Alu -2 146 1 3 1140 24 53 0 0 chr3 72763169 72763207 -86836576 + AT_rich Low_complexity Low_complexity 1 38 0 3 1140 368 351 5 51 chr3 72763392 72763608 -86836175 + B3 SINE B2 5 210 -6 3 1140 24 0 0 0 chr3 72763614 72763638 -86836145 + AT_rich Low_complexity Low_complexity 1 24 0 3 1140 552 286 0 21 chr3 72763929 72764072 -86835711 + B3 SINE B2 4 143 -73 3 1140 33 25 0 0 chr3 72764342 72764382 -86835401 + AT_rich Low_complexity Low_complexity 1 40 0 3 1140 3154 56 0 0 chr3 72764423 72764817 -86834966 + L1_Mus1 LINE L1 6174 6567 0 3 1140 222 37 0 0 chr3 72765069 72765096 -86834687 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3 1140 255 31 0 0 chr3 72766058 72766090 -86833693 + (A)n Simple_repeat Simple_repeat 1 32 0 3 1140 935 277 174 37 chr3 72766807 72767324 -86832459 + Lx9 LINE L1 7052 7639 -5 3 1140 30 45 0 0 chr3 72769742 72769786 -86829997 + AT_rich Low_complexity Low_complexity 1 44 0 3 1140 354 107 0 0 chr3 72770158 72770214 -86829569 + (GGGAGA)n Simple_repeat Simple_repeat 6 61 0 3 1140 255 230 111 34 chr3 72770905 72771022 -86828761 + Lx9 LINE L1 7519 7644 0 3 1140 1217 341 60 18 chr3 72773507 72774122 -86825661 - Lx8 LINE L1 -511 6962 6322 3 1140 508 306 85 11 chr3 72774266 72774537 -86825246 - L1_Rod LINE L1 -11 5836 5546 3 1140 257 314 77 103 chr3 72774576 72774732 -86825051 + Lx8 LINE L1 7071 7222 -251 3 1140 43 20 0 0 chr3 72774858 72774908 -86824875 + AT_rich Low_complexity Low_complexity 1 50 0 3 1140 9082 161 13 84 chr3 72775838 72777854 -86821929 + L1_Mur2 LINE L1 3489 5360 -517 3 1140 1196 128 22 22 chr3 72777854 72778069 -86821714 - MT2B2 LTR ERVL -29 555 233 3 1140 356 111 0 0 chr3 72778065 72778119 -86821664 + MT2B LTR ERVL 548 601 0 3 1140 282 240 0 186 chr3 72778173 72778291 -86821492 - MLT2C2 LTR ERVL -359 105 10 3 1140 292 350 40 104 chr3 72778387 72778741 -86821042 - ORR1E LTR MaLR -5 354 24 3 1140 6286 126 47 15 chr3 72778746 72779866 -86819917 + Lx LINE L1 5364 6518 -136 3 1140 231 36 0 0 chr3 72779866 72779894 -86819889 + (TGGG)n Simple_repeat Simple_repeat 2 29 0 3 1140 6286 122 56 19 chr3 72779894 72780018 -86819765 + Lx LINE L1 6519 6647 -7 3 1140 2710 193 211 28 chr3 72780027 72780789 -86818994 + RMER12 LTR ERVK 421 1322 0 3 1140 720 285 59 55 chr3 72780793 72781049 -86818734 + MTD LTR MaLR 149 405 -14 3 1140 2155 81 0 20 chr3 72781902 72782203 -86817580 - Lx3A LINE L1 -961 6020 5726 3 1140 5126 263 94 21 chr3 72782206 72783883 -86815900 - Lx6 LINE L1 -15 7445 5647 3 1140 322 111 0 171 chr3 72783904 72783926 -86815857 - L1_Mur1 LINE L1 -1529 4357 4341 3 1140 352 0 42 0 chr3 72783926 72783974 -86815809 + (TTG)n Simple_repeat Simple_repeat 2 51 0 3 1140 985 94 14 7 chr3 72783974 72784113 -86815670 - B1_Mus1 SINE Alu -8 140 1 3 1140 322 111 0 171 chr3 72784113 72784165 -86815618 - Lx3_Mus LINE L1 -1546 4340 4296 3 1140 10206 89 30 22 chr3 72784153 72784276 -86815507 + Lx3_Mus LINE L1 4333 4459 -1427 3 1140 5534 29 0 0 chr3 72784276 72784925 -86814858 + L1Md_A LINE L1 5934 6582 0 3 1140 10206 89 30 22 chr3 72784925 72785333 -86814450 + Lx3_Mus LINE L1 4460 4861 -1025 3 1140 180 0 0 0 chr3 72785333 72785353 -86814430 + (CAA)n Simple_repeat Simple_repeat 2 21 0 4 1140 10206 104 19 33 chr3 72785353 72787305 -86812478 + Lx3_Mus LINE L1 4862 6786 -223 3 1140 267 54 0 0 chr3 72787305 72787342 -86812441 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 4 1140 8005 120 7 44 chr3 72787342 72787412 -86812371 + Lx3_Mus LINE L1 6787 6856 -153 3 1140 225 316 50 33 chr3 72787412 72787533 -86812250 - RSINE1 SINE B4 -39 126 4 4 1140 329 368 35 66 chr3 72787779 72787977 -86811806 + B3A SINE B2 2 193 -5 4 1140 2486 42 19 9 chr3 72788001 72788316 -86811467 + L1Md_F2 LINE L1 6263 6580 -2 4 1140 603 0 0 0 chr3 72788561 72788628 -86811155 + (TA)n Simple_repeat Simple_repeat 2 68 0 4 1140 195 184 0 0 chr3 72789420 72789458 -86810325 + (TG)n Simple_repeat Simple_repeat 2 39 0 4 1140 28 29 0 0 chr3 72790500 72790535 -86809248 + AT_rich Low_complexity Low_complexity 1 35 0 4 1140 267 103 0 0 chr3 72791105 72791144 -86808639 + (TGAA)n Simple_repeat Simple_repeat 3 41 0 4 1140 213 114 44 22 chr3 72791326 72791371 -86808412 + (TTTG)n Simple_repeat Simple_repeat 2 47 0 4 1140 338 300 117 45 chr3 72791555 72791820 -86807963 + L1M4b LINE L1 2559 2842 -4492 4 1140 4740 150 24 44 chr3 72791960 72792447 -86807336 + Lx2 LINE L1 5489 5955 -1042 4 1140 7971 42 12 8 chr3 72792447 72793436 -86806347 + L1Md_F2 LINE L1 5587 6579 -3 4 1140 4740 146 29 55 chr3 72793436 72793923 -86805860 + Lx2 LINE L1 5956 6440 -557 4 1140 2945 166 7 48 chr3 72793929 72794467 -86805316 - Lx2B LINE L1 -27 6973 6458 4 1140 720 296 13 36 chr3 72795241 72795465 -86804318 + ID_B1 SINE B4 2 220 -4 4 1140 219 69 0 0 chr3 72795653 72795682 -86804101 + (TTG)n Simple_repeat Simple_repeat 2 30 0 4 1140 246 314 18 45 chr3 72795692 72795802 -86803981 - PB1D10 SINE Alu 0 117 11 4 1140 576 344 0 0 chr3 72795926 72796077 -86803706 + RSINE1 SINE B4 11 161 -4 4 1140 27 0 0 0 chr3 72796077 72796104 -86803679 + AT_rich Low_complexity Low_complexity 1 27 0 4 1140 794 264 29 41 chr3 72797231 72797592 -86802191 - L1_Mur3 LINE L1 -2882 3264 2877 4 1140 6843 134 41 21 chr3 72797595 72798801 -86800982 - Lx3C LINE L1 -2 6974 5745 4 1140 915 270 30 7 chr3 72798801 72799096 -86800687 - L1_Mur3 LINE L1 -3572 2308 2007 4 1140 1102 282 62 0 chr3 72799576 72799899 -86799884 + Lx7 LINE L1 6702 7044 -652 4 1140 465 19 0 0 chr3 72802168 72802222 -86797561 + (TA)n Simple_repeat Simple_repeat 2 55 0 4 1140 2820 226 34 23 chr3 72802376 72803122 -86796661 - Lx9 LINE L1 0 7644 6891 4 1140 302 344 91 8 chr3 72803145 72803277 -86796506 - ID_B1 SINE B4 -3 221 79 4 1140 1634 301 84 39 chr3 72803996 72804839 -86794944 + Lx9 LINE L1 6483 7363 -281 4 1140 233 291 65 60 chr3 72805747 72805915 -86793868 + Lx9 LINE L1 7350 7518 -126 4 1140 47 33 0 0 chr3 72805970 72806031 -86793752 + AT_rich Low_complexity Low_complexity 1 61 0 4 1140 407 344 68 91 chr3 72806065 72806669 -86793114 - L1MDa LINE L1 -5141 1492 903 4 1140 378 0 0 0 chr3 72807695 72807737 -86792046 + (TG)n Simple_repeat Simple_repeat 2 43 0 4 1140 569 216 56 50 chr3 72808197 72808358 -86791425 + Lx6 LINE L1 7313 7449 -11 4 1140 192 40 0 0 chr3 72809100 72809125 -86790658 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 4 1140 551 53 13 0 chr3 72809208 72809283 -86790500 + (TAGA)n Simple_repeat Simple_repeat 1 76 0 4 1140 425 352 19 21 chr3 72809307 72809493 -86790290 - B3A SINE B2 -30 186 3 4 1140 695 304 58 75 chr3 72809626 72810039 -86789744 - Lx6 LINE L1 -90 7370 6965 4 1140 304 257 20 105 chr3 72810020 72810172 -86789611 - Lx6 LINE L1 -28 7432 7294 4 1140 189 132 0 0 chr3 72810236 72810274 -86789509 + (G)n Simple_repeat Simple_repeat 1 38 0 4 1140 371 243 23 44 chr3 72810276 72810398 -86789385 - Lx6 LINE L1 -498 6962 6844 4 1140 21 82 0 0 chr3 72810771 72810820 -86788963 + AT_rich Low_complexity Low_complexity 1 49 0 4 1140 316 241 42 21 chr3 72810822 72810966 -86788817 - Lx9 LINE L1 -14 7630 7484 4 1140 530 336 14 0 chr3 72811220 72811440 -86788343 - Lx9 LINE L1 -199 7445 7223 4 1140 264 266 0 0 chr3 72811433 72811497 -86788286 + Lx9 LINE L1 6710 6773 -871 4 1140 721 238 69 65 chr3 72811529 72811776 -86788007 + Lx9 LINE L1 6841 7088 -556 4 1140 951 275 74 7 chr3 72813092 72813363 -86786420 + Lx7 LINE L1 6345 6633 -1063 4 1140 38007 44 2 6 chr3 72813371 72819566 -86780217 - L1Md_F2 LINE L1 -12 6570 407 4 1140 8387 96 2 47 chr3 72819568 72821707 -86778076 - L1Md_F LINE L1 -3521 2362 323 4 1140 570 322 0 101 chr3 72821706 72822003 -86777780 + Lx7 LINE L1 6624 6890 -806 4 1140 24 85 0 0 chr3 72822859 72822918 -86776865 + AT_rich Low_complexity Low_complexity 1 59 0 4 1140 205 148 32 16 chr3 72823142 72823204 -86776579 + (TATG)n Simple_repeat Simple_repeat 2 64 0 4 1140 633 202 8 30 chr3 72823209 72823342 -86776441 - URR1B DNA MER1_type -1 224 95 4 1140 211 234 62 15 chr3 72823440 72823505 -86776278 + CT-rich Low_complexity Low_complexity 4 71 0 4 1140 234 111 0 0 chr3 72823608 72823644 -86776139 + ORR1D1 LTR MaLR 1 36 -338 4 1140 977 199 53 38 chr3 72823641 72823938 -86775845 - RMER6D LTR ERVK -388 332 83 4 1140 405 228 92 50 chr3 72823938 72824058 -86775725 - RMER6C LTR ERVK -501 189 65 4 1140 40488 13 0 6 chr3 72824058 72830269 -86769514 - L1Md_A LINE L1 0 6582 413 4 1140 769 99 16 8 chr3 72830285 72830407 -86769376 - MT2C_Mm LTR ERVL -38 437 315 4 1140 356 238 38 0 chr3 72830415 72830495 -86769288 - RMER6C LTR ERVK -607 83 1 4 1140 28 0 0 0 chr3 72831330 72831358 -86768425 + AT_rich Low_complexity Low_complexity 1 28 0 4 1140 2977 161 45 27 chr3 72831757 72832355 -86767428 - Lx2 LINE L1 0 6997 6389 4 1140 405 0 0 0 chr3 72832651 72832696 -86767087 + (TTTA)n Simple_repeat Simple_repeat 4 48 0 4 1140 841 108 0 0 chr3 72832696 72832816 -86766967 - B1_Mus1 SINE Alu -26 122 3 4 1140 242 156 0 59 chr3 72832952 72833020 -86766763 - Lx9 LINE L1 -23 7621 7558 4 1140 683 253 19 117 chr3 72833012 72833148 -86766635 - Lx9 LINE L1 -209 7435 7311 4 1140 549 0 0 0 chr3 72833148 72833209 -86766574 + (TC)n Simple_repeat Simple_repeat 2 62 0 4 1140 683 253 19 117 chr3 72833209 72833336 -86766447 - Lx9 LINE L1 -334 7310 7198 4 1140 27 29 0 0 chr3 72833889 72833923 -86765860 + AT_rich Low_complexity Low_complexity 1 34 0 4 1140 221 345 44 26 chr3 72834149 72834262 -86765521 - L2b LINE L2 -212 3163 3049 4 1140 277 312 107 0 chr3 72834588 72834700 -86765083 - L2b LINE L2 -611 2808 2685 4 1140 1423 345 67 32 chr3 72834939 72835826 -86763957 + Lx8 LINE L1 6528 7445 -28 4 1140 21 36 0 0 chr3 72835832 72835860 -86763923 + AT_rich Low_complexity Low_complexity 1 28 0 4 1140 612 281 48 58 chr3 72838173 72838381 -86761402 - URR1B DNA MER1_type -13 212 7 4 1140 208 321 26 68 chr3 72838769 72838886 -86760897 - MIRb SINE MIR -8 260 149 4 1140 324 301 0 24 chr3 72839009 72839094 -86760689 + B2_Mm2 SINE B2 9 91 -104 4 1140 318 152 0 0 chr3 72839094 72839153 -86760630 + (CA)n Simple_repeat Simple_repeat 1 59 0 4 1140 686 29 48 0 chr3 72839153 72839257 -86760526 + (TAGA)n Simple_repeat Simple_repeat 2 110 0 4 1140 351 0 0 0 chr3 72840352 72840391 -86759392 + (CAAA)n Simple_repeat Simple_repeat 1 39 0 4 1140 277 247 93 0 chr3 72841198 72841295 -86758488 - Lx7 LINE L1 -2 7694 7589 4 1140 198 0 0 0 chr3 72841298 72841320 -86758463 + (TC)n Simple_repeat Simple_repeat 1 22 0 4 1140 823 273 69 50 chr3 72841321 72841683 -86758100 - Lx7 LINE L1 -169 7527 7159 4 1140 2469 246 12 5 chr3 72841685 72842248 -86757535 - Lx7 LINE L1 -1010 6686 6120 4 1140 1197 248 81 23 chr3 72842257 72842448 -86757335 - ORR1D1 LTR MaLR -5 369 170 4 1140 590 0 14 0 chr3 72842448 72842518 -86757265 + (TAGA)n Simple_repeat Simple_repeat 3 73 0 4 1140 303 28 0 0 chr3 72842526 72842562 -86757221 + (CATA)n Simple_repeat Simple_repeat 1 36 0 4 1140 1197 248 81 23 chr3 72842562 72842708 -86757075 - ORR1D1 LTR MaLR -213 161 4 4 1140 778 239 118 34 chr3 72842718 72843099 -86756684 - Lx7 LINE L1 -1605 6091 5679 4 1140 329 0 24 0 chr3 72844502 72844543 -86755240 + (TG)n Simple_repeat Simple_repeat 2 43 0 4 1140 280 269 89 48 chr3 72845122 72845290 -86754493 + Lx8 LINE L1 7299 7473 0 4 1140 189 74 0 0 chr3 72845849 72845876 -86753907 + (A)n Simple_repeat Simple_repeat 1 27 0 4 1140 223 347 103 97 chr3 72846676 72846861 -86752922 + B4A SINE B4 39 224 -68 4 1140 551 301 8 0 chr3 72846729 72846862 -86752921 + B1F SINE Alu 15 148 -1 4 1140 507 32 0 0 chr3 72847787 72847842 -86751941 + (GA)n Simple_repeat Simple_repeat 2 56 0 4 1140 1043 127 6 0 chr3 72847842 72848015 -86751768 + (GAGAA)n Simple_repeat Simple_repeat 4 177 0 4 1140 507 32 0 0 chr3 72848015 72848022 -86751761 + (GA)n Simple_repeat Simple_repeat 1 7 0 4 1140 331 202 20 0 chr3 72848216 72848315 -86751468 + (TA)n Simple_repeat Simple_repeat 2 102 0 4 1140 23 0 0 0 chr3 72849072 72849095 -86750688 + AT_rich Low_complexity Low_complexity 1 23 0 4 1140 183 42 0 0 chr3 72850607 72850631 -86749152 + (G)n Simple_repeat Simple_repeat 1 24 0 4 1140 36 23 0 0 chr3 72851387 72851430 -86748353 + AT_rich Low_complexity Low_complexity 1 43 0 4 1140 480 163 0 0 chr3 72851688 72851774 -86748009 + (TG)n Simple_repeat Simple_repeat 2 87 0 4 1140 239 0 0 31 chr3 72855670 72855702 -86744081 + (CAA)n Simple_repeat Simple_repeat 2 32 0 4 1140 405 0 0 0 chr3 72856098 72856143 -86743640 + (CA)n Simple_repeat Simple_repeat 2 46 0 4 1140 411 21 0 0 chr3 72857687 72857735 -86742048 + (TG)n Simple_repeat Simple_repeat 1 48 0 4 1140 237 108 0 0 chr3 72858225 72858262 -86741521 + (TTCC)n Simple_repeat Simple_repeat 1 37 0 4 1140 252 256 29 7 chr3 72858438 72858521 -86741262 + CT-rich Low_complexity Low_complexity 1 84 0 4 1140 1021 131 11 0 chr3 72858899 72859075 -86740708 + (GAA)n Simple_repeat Simple_repeat 1 178 0 4 1140 428 91 15 0 chr3 72859079 72859145 -86740638 + (GGA)n Simple_repeat Simple_repeat 3 69 0 4 1140 315 0 0 0 chr3 72860059 72860094 -86739689 + (TA)n Simple_repeat Simple_repeat 2 36 0 4 1140 342 0 0 0 chr3 72860290 72860328 -86739455 + (TA)n Simple_repeat Simple_repeat 1 38 0 4 1140 1300 0 0 43 chr3 72861745 72861933 -86737850 + (TC)n Simple_repeat Simple_repeat 1 180 0 4 1140 183 42 0 0 chr3 72861933 72861957 -86737826 + (TCCC)n Simple_repeat Simple_repeat 3 26 0 4 1140 240 35 0 0 chr3 72863352 72863381 -86736402 + (TTA)n Simple_repeat Simple_repeat 2 30 0 4 1140 210 37 0 0 chr3 72864228 72864255 -86735528 + (CA)n Simple_repeat Simple_repeat 2 28 0 4 1140 27 29 0 0 chr3 72864613 72864647 -86735136 + AT_rich Low_complexity Low_complexity 1 34 0 4 1140 735 115 0 0 chr3 72865026 72865165 -86734618 + (TC)n Simple_repeat Simple_repeat 2 140 0 4 1140 376 245 74 19 chr3 72865257 72865365 -86734418 + ID_B1 SINE B4 85 198 -26 5 1140 480 345 19 53 chr3 72867173 72867436 -86732347 + MLT1E2 LTR MaLR 374 627 0 5 1140 235 280 0 0 chr3 72867545 72867595 -86732188 + Lx8 LINE L1 7164 7213 -260 5 1140 1076 141 82 0 chr3 72867913 72868119 -86731664 - Lx2 LINE L1 -1 6996 6774 5 1140 935 119 12 48 chr3 72868119 72868287 -86731496 + Lx2 LINE L1 6609 6770 -227 5 1140 25 31 0 0 chr3 72868895 72868927 -86730856 + AT_rich Low_complexity Low_complexity 1 32 0 5 1140 369 201 34 28 chr3 72869834 72870013 -86729770 + CT-rich Low_complexity Low_complexity 1 180 0 5 1140 248 77 0 25 chr3 72870623 72870663 -86729120 + (TTTC)n Simple_repeat Simple_repeat 2 40 0 5 1140 1895 72 4 0 chr3 72872402 72872653 -86727130 - L1_Mus1 LINE L1 0 6567 6316 5 1140 432 0 0 0 chr3 72873454 72873502 -86726281 + (TA)n Simple_repeat Simple_repeat 2 49 0 5 1140 1726 73 4 4 chr3 72874060 72874295 -86725488 - L1_Mus2 LINE L1 -1 6565 6331 5 1140 243 0 0 0 chr3 72874912 72874939 -86724844 + (CA)n Simple_repeat Simple_repeat 2 28 0 5 1141 453 152 8 4 chr3 72877426 72877508 -86722275 + Lx3A LINE L1 6409 6492 -481 5 1141 2622 202 46 29 chr3 72877580 72878165 -86721618 - Lx5 LINE L1 0 7050 6456 5 1141 200 0 100 0 chr3 72878166 72878196 -86721587 + (TTTAA)n Simple_repeat Simple_repeat 3 35 0 5 1141 9475 97 22 35 chr3 72878196 72879247 -86720536 - Lx3_Mus LINE L1 -19 6990 5909 5 1141 180 0 0 0 chr3 72879247 72879267 -86720516 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 5 1141 16228 100 7 25 chr3 72879267 72879388 -86720395 - Lx3_Mus LINE L1 -1101 5908 5789 5 1141 257 111 0 0 chr3 72879388 72879424 -86720359 - U2 snRNA snRNA -152 36 1 5 1141 16228 100 7 25 chr3 72879424 72881751 -86718032 - Lx3_Mus LINE L1 -1101 5788 3470 5 1141 6448 120 33 12 chr3 72881753 72882948 -86716835 - L1_Mus3 LINE L1 0 6638 5453 5 1141 180 0 0 0 chr3 72882948 72882968 -86716815 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 5 1141 5787 153 20 9 chr3 72882968 72883560 -86716223 - L1_Mus3 LINE L1 -431 5452 4845 5 1141 10373 110 2 10 chr3 72883557 72885195 -86714588 - Lx3_Mus LINE L1 -2399 3487 1863 5 1141 920 274 66 4 chr3 72885195 72885466 -86714317 - Lx5 LINE L1 -586 6464 6177 5 1141 369 288 104 22 chr3 72885929 72886064 -86713719 + B1F1 SINE Alu 1 146 -3 5 1141 633 27 0 0 chr3 72886177 72886252 -86713531 + (TA)n Simple_repeat Simple_repeat 1 75 0 5 1141 23 0 0 0 chr3 72887308 72887331 -86712452 + AT_rich Low_complexity Low_complexity 1 23 0 5 1141 201 39 0 0 chr3 72887404 72887430 -86712353 + (TTTTA)n Simple_repeat Simple_repeat 5 30 0 5 1141 366 23 0 0 chr3 72887439 72887482 -86712301 + (TG)n Simple_repeat Simple_repeat 2 44 0 5 1141 383 326 116 20 chr3 72887486 72887633 -86712150 - RSINE1 SINE B4 -2 163 3 5 1141 21 0 0 0 chr3 72887972 72887993 -86711790 + AT_rich Low_complexity Low_complexity 1 21 0 5 1141 671 275 51 28 chr3 72888315 72888532 -86711251 + B4A SINE B4 8 229 -63 5 1141 401 327 33 98 chr3 72888715 72889020 -86710763 + B4A SINE B4 2 286 -6 5 1141 465 324 8 105 chr3 72889709 72889947 -86709836 - B3 SINE B2 0 216 2 5 1141 27 0 0 0 chr3 72891974 72892001 -86707782 + AT_rich Low_complexity Low_complexity 1 27 0 5 1141 38893 35 0 0 chr3 72892026 72897438 -86702345 - L1Md_T LINE L1 0 6582 1170 5 1141 4610 148 29 35 chr3 72897444 72898361 -86701422 - L1Md_T LINE L1 -5411 1205 294 5 1141 853 217 0 0 chr3 72898352 72898527 -86701256 + Lx4B LINE L1 5907 6081 -977 5 1141 543 310 67 16 chr3 72898530 72898710 -86701073 - ID_B1 SINE B4 -35 189 4 5 1141 251 273 221 41 chr3 72898869 72899014 -86700769 - MER20 DNA MER1_type -48 171 1 5 1141 377 186 69 15 chr3 72899329 72899460 -86700323 - Lx9 LINE L1 -43 7601 7464 5 1141 1018 208 26 86 chr3 72899464 72899732 -86700051 + Lx9 LINE L1 7164 7415 -229 5 1141 3119 148 111 26 chr3 72900357 72900924 -86698859 - Lx4A LINE L1 -2 7056 6442 5 1141 207 0 0 0 chr3 72901142 72901165 -86698618 + (CA)n Simple_repeat Simple_repeat 2 24 0 5 1141 7927 49 5 2 chr3 72901178 72902643 -86697140 - L1Md_F2 LINE L1 -12 6570 5099 5 1141 187 60 78 20 chr3 72902672 72902723 -86697060 + (TATAG)n Simple_repeat Simple_repeat 2 55 0 5 1141 240 35 0 0 chr3 72902820 72902849 -86696934 + (CA)n Simple_repeat Simple_repeat 2 30 0 5 1141 224 316 64 26 chr3 72902849 72902862 -86696921 - ID SINE ID -142 82 2 5 1141 260 286 31 31 chr3 72902862 72902927 -86696856 - ID4 SINE ID -17 66 2 5 1141 1593 114 45 28 chr3 72903239 72903527 -86696256 - Lx LINE L1 -4 6650 6358 5 1141 21 0 0 0 chr3 72903600 72903621 -86696162 + AT_rich Low_complexity Low_complexity 1 21 0 5 1141 221 196 0 18 chr3 72903625 72903682 -86696101 + (TA)n Simple_repeat Simple_repeat 2 57 0 5 1141 264 337 182 24 chr3 72903683 72903853 -86695930 - B4A SINE B4 -2 290 94 5 1141 225 132 0 0 chr3 72903864 72903902 -86695881 + (CAAG)n Simple_repeat Simple_repeat 2 39 0 5 1141 246 286 48 0 chr3 72903932 72903995 -86695788 - B4A SINE B4 -225 67 2 5 1141 206 274 0 0 chr3 72905278 72905306 -86694477 + T-rich Low_complexity Low_complexity 46 73 0 5 1141 2245 130 32 73 chr3 72905306 72905745 -86694038 - Lx3B LINE L1 0 6973 6553 5 1141 206 274 0 0 chr3 72905745 72905789 -86693994 + T-rich Low_complexity Low_complexity 2 45 0 5 1141 1667 161 25 16 chr3 72905789 72906104 -86693679 - Lx LINE L1 0 6654 6337 5 1141 908 135 7 0 chr3 72906104 72906245 -86693538 - Lx3B LINE L1 -422 6559 6418 5 1141 189 0 0 0 chr3 72906811 72906832 -86692951 + (CCA)n Simple_repeat Simple_repeat 1 21 0 5 1141 447 150 146 29 chr3 72906854 72906957 -86692826 - B1_Mus1 SINE Alu 0 148 34 5 1141 401 292 71 0 chr3 72907795 72907908 -86691875 + B1F2 SINE Alu 11 131 -18 5 1141 255 348 0 0 chr3 72908220 72908289 -86691494 + polypyrimidine Low_complexity Low_complexity 6 74 0 5 1141 2243 332 26 58 chr3 72908777 72909569 -86690214 + Lx9 LINE L1 6362 7144 -500 5 1141 189 0 0 0 chr3 72909569 72909590 -86690193 + (CAAA)n Simple_repeat Simple_repeat 4 24 0 5 1141 2243 332 26 58 chr3 72909590 72909629 -86690154 + Lx9 LINE L1 7145 7159 -485 5 1141 672 54 0 0 chr3 72909629 72909722 -86690061 + (CAAAC)n Simple_repeat Simple_repeat 2 94 0 5 1141 2243 333 32 62 chr3 72909722 72910156 -86689627 + Lx9 LINE L1 7030 7461 -183 5 1141 24 0 0 0 chr3 72910256 72910280 -86689503 + AT_rich Low_complexity Low_complexity 1 24 0 5 1141 6979 127 14 2 chr3 72910289 72911559 -86688224 - Lx LINE L1 -1 6653 5360 5 1141 2847 177 9 6 chr3 72911559 72912100 -86687683 + Lx LINE L1 4806 5348 -535 5 1141 303 297 64 64 chr3 72914155 72914342 -86685441 - MIR SINE MIR -28 240 54 5 1141 451 306 125 26 chr3 72914633 72915090 -86684693 - L1M2 LINE L1 -744 5399 4898 5 1141 445 309 131 37 chr3 72915097 72915314 -86684469 + L1M2 LINE L1 4270 4496 -1647 5 1141 240 35 0 0 chr3 72915314 72915343 -86684440 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 5 1141 445 309 131 37 chr3 72915343 72915499 -86684284 + L1M2 LINE L1 4497 4655 -1488 5 1141 279 0 0 0 chr3 72915499 72915530 -86684253 + (CA)n Simple_repeat Simple_repeat 2 32 0 5 1141 445 311 114 32 chr3 72915530 72915700 -86684083 + L1M2 LINE L1 4656 4866 -1280 5 1141 3093 165 49 41 chr3 72916452 72917089 -86682694 - RLTR26 LTR ERVK 0 642 1 5 1141 299 408 16 0 chr3 72917426 72917551 -86682232 + RSINE1 SINE B4 15 141 -24 5 1141 186 43 0 0 chr3 72917716 72917739 -86682044 + (TGAA)n Simple_repeat Simple_repeat 3 25 0 5 1141 382 303 79 0 chr3 72919786 72919938 -86679845 + Lx8 LINE L1 7011 7174 -299 5 1141 390 21 0 0 chr3 72920047 72920094 -86679689 + (CA)n Simple_repeat Simple_repeat 2 48 0 5 1141 186 237 0 48 chr3 72921166 72921228 -86678555 - L3b LINE CR1 -180 302 244 5 1141 459 52 0 0 chr3 72921331 72921389 -86678394 + (TG)n Simple_repeat Simple_repeat 1 58 0 5 1141 495 0 0 0 chr3 72921389 72921443 -86678340 + (GA)n Simple_repeat Simple_repeat 1 55 0 5 1141 491 348 129 20 chr3 72921445 72921700 -86678083 - B4 SINE B4 -2 290 8 5 1141 714 298 51 38 chr3 72921904 72922277 -86677506 + L1MA4 LINE L1 5481 5858 -442 5 1141 367 316 75 8 chr3 72922293 72922548 -86677235 + L1MA4 LINE L1 5918 6189 -111 5 1141 3278 36 2 0 chr3 72922566 72923003 -86676780 - L1Md_F2 LINE L1 -656 5926 5489 5 1141 5489 35 0 16 chr3 72923003 72923674 -86676109 + L1Md_F2 LINE L1 5911 6570 -12 5 1141 219 270 26 51 chr3 72923681 72923759 -86676024 + PB1D10 SINE Alu 41 116 -1 5 1141 230 257 14 14 chr3 72924090 72924161 -86675622 + CT-rich Low_complexity Low_complexity 5 75 0 5 1141 357 336 10 0 chr3 72924341 72924445 -86675338 + PB1D10 SINE Alu 1 105 -12 5 1141 270 363 50 81 chr3 72924477 72924699 -86675084 + L2a LINE L2 2945 3159 -267 5 1141 208 191 24 0 chr3 72925744 72925786 -86673997 + CT-rich Low_complexity Low_complexity 3 45 0 5 1141 502 87 14 0 chr3 72925787 72925856 -86673927 + U4 snRNA snRNA 1 70 -75 5 1141 674 99 9 0 chr3 72925860 72925934 -86673849 + (TTC)n Simple_repeat Simple_repeat 2 75 0 5 1141 1266 76 0 0 chr3 72925934 72926105 -86673678 + (TCC)n Simple_repeat Simple_repeat 2 172 0 5 1141 674 99 9 0 chr3 72926105 72926141 -86673642 + (TTC)n Simple_repeat Simple_repeat 1 37 0 5 1141 6332 249 86 29 chr3 72926148 72927095 -86672688 - Lx7 LINE L1 0 7696 6733 5 1141 315 0 0 0 chr3 72927095 72927130 -86672653 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 5 1141 6332 250 83 28 chr3 72927130 72928216 -86671567 - Lx7 LINE L1 -964 6732 5546 5 1141 3437 221 64 82 chr3 72928212 72929833 -86669950 - Lx7 LINE L1 -997 4889 3532 5 1141 4535 43 0 5 chr3 72929833 72930387 -86669396 - L1Md_F2 LINE L1 -1 6581 6031 5 1141 3437 195 95 22 chr3 72930387 72930537 -86669246 - Lx7 LINE L1 -2349 3531 3375 5 1141 183 129 0 0 chr3 72930537 72930568 -86669215 + (TG)n Simple_repeat Simple_repeat 1 31 0 5 1141 3437 195 95 22 chr3 72930568 72930926 -86668857 - Lx7 LINE L1 -2506 3374 2994 5 1141 275 190 35 0 chr3 72930926 72930984 -86668799 - Lx7 LINE L1 -508 7188 7129 5 1141 585 76 0 0 chr3 72931004 72931083 -86668700 + (TG)n Simple_repeat Simple_repeat 2 80 0 5 1141 2964 266 103 12 chr3 72931136 72931249 -86668534 - Lx7 LINE L1 -594 7102 6936 5 1141 2645 122 5 5 chr3 72931249 72931662 -86668121 - L1_Mus4 LINE L1 -7 6629 6217 5 1141 2964 266 103 12 chr3 72931662 72932392 -86667391 - Lx7 LINE L1 -761 6935 6190 5 1141 342 0 0 0 chr3 72932392 72932430 -86667353 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 5 1141 2964 266 103 12 chr3 72932430 72932533 -86667250 - Lx7 LINE L1 -1507 6189 6070 5 1141 1130 126 6 6 chr3 72932729 72932912 -86666871 - B2_Mm2 SINE B2 -8 187 5 5 1141 241 278 111 59 chr3 72932914 72933067 -86666716 + Lx8 LINE L1 6791 6951 -522 5 1141 310 0 0 0 chr3 72934579 72934621 -86665162 - L1_Mus2 LINE L1 -1 6565 6524 5 1141 1342 186 63 40 chr3 72934944 72935387 -86664396 + Lx2B LINE L1 6501 6991 -6 5 1141 637 245 35 14 chr3 72935519 72935660 -86664123 - RSINE1 SINE B4 -19 146 3 5 1141 252 0 0 0 chr3 72936280 72936308 -86663475 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 5 1141 774 271 5 38 chr3 72936482 72936693 -86663090 - B3 SINE B2 -11 205 2 5 1141 231 167 0 0 chr3 72936859 72936901 -86662882 + (TAA)n Simple_repeat Simple_repeat 1 42 0 6 1141 181 333 0 0 chr3 72937135 72937192 -86662591 - MER5A DNA MER1_type -5 184 128 6 1141 231 281 33 66 chr3 72937284 72937406 -86662377 - PB1D7 SINE Alu 0 120 3 6 1141 220 282 56 0 chr3 72937409 72937480 -86662303 - MER5A DNA MER1_type -114 75 1 6 1141 380 321 95 40 chr3 72937596 72937943 -86661840 - MLT1A LTR MaLR -2 406 4 6 1141 225 0 0 0 chr3 72938621 72938646 -86661137 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 6 1141 240 370 18 18 chr3 72939554 72939664 -86660119 - PB1D10 SINE Alu -5 112 3 6 1141 576 281 26 58 chr3 72939699 72939888 -86659895 + B3A SINE B2 8 190 -8 6 1141 531 208 0 0 chr3 72939888 72940008 -86659775 + (CA)n Simple_repeat Simple_repeat 1 120 0 6 1141 280 222 19 0 chr3 72940038 72940146 -86659637 + (CA)n Simple_repeat Simple_repeat 1 110 0 6 1141 23 33 0 0 chr3 72940291 72940321 -86659462 + AT_rich Low_complexity Low_complexity 1 30 0 6 1141 1439 244 9 12 chr3 72940322 72940662 -86659121 - Lx5 LINE L1 -2 7048 6710 6 1141 1260 219 90 71 chr3 72940662 72940755 -86659028 - RLTR20A LTR ERVK 0 541 441 6 1141 450 0 0 0 chr3 72940755 72940805 -86658978 + (CA)n Simple_repeat Simple_repeat 2 51 0 6 1141 1260 224 94 67 chr3 72940805 72941238 -86658545 - RLTR20A LTR ERVK -102 476 24 6 1141 255 301 27 27 chr3 72941477 72941552 -86658231 + MTD LTR MaLR 199 273 -146 6 1141 1302 282 17 39 chr3 72941754 72942202 -86657581 - MTD LTR MaLR -14 407 1 6 1141 210 71 0 0 chr3 72942580 72942608 -86657175 + (A)n Simple_repeat Simple_repeat 1 28 0 6 1141 201 39 0 0 chr3 72942891 72942917 -86656866 + (TTTTTG)n Simple_repeat Simple_repeat 4 29 0 6 1141 678 291 80 114 chr3 72943337 72943636 -86656147 + MTE2b LTR MaLR 27 315 -64 6 1141 255 302 16 0 chr3 72943679 72943742 -86656041 - ID4 SINE ID -10 73 10 6 1141 339 44 0 0 chr3 72944144 72944189 -86655594 + (CAAA)n Simple_repeat Simple_repeat 2 46 0 6 1141 4516 237 58 19 chr3 72944880 72946026 -86653757 - Lx5 LINE L1 -16 7034 5845 6 1141 229 280 51 51 chr3 72946028 72946126 -86653657 - Looper DNA PiggyBac -671 887 790 6 1141 2025 180 85 0 chr3 72946130 72946530 -86653253 - Lx5 LINE L1 -161 5716 5283 6 1141 6871 100 30 9 chr3 72946537 72946773 -86653010 - L1_Mus3 LINE L1 0 6638 6407 6 1141 450 0 0 0 chr3 72946773 72946823 -86652960 + (TA)n Simple_repeat Simple_repeat 2 51 0 6 1141 6871 106 36 11 chr3 72946823 72947807 -86651976 - L1_Mus3 LINE L1 -232 6406 5383 6 1141 4897 138 4 1 chr3 72947804 72948550 -86651233 + L1VL1 LINE L1 118 865 -5557 6 1141 512 246 283 38 chr3 72948678 72948915 -86650868 + MTD LTR MaLR 104 398 -21 6 1141 426 208 99 0 chr3 72949647 72949748 -86650035 + Lx3B LINE L1 6861 6971 -2 6 1141 335 271 105 73 chr3 72949944 72950163 -86649620 + MTE2a LTR MaLR 154 379 0 6 1141 465 0 46 0 chr3 72950225 72950290 -86649493 + (CAA)n Simple_repeat Simple_repeat 2 69 0 6 1141 789 81 195 0 chr3 72951114 72951237 -86648546 + B1_Mus2 SINE Alu 1 147 0 6 1141 1686 147 0 18 chr3 72951438 72951715 -86648068 - RMER6C LTR ERVK 0 690 419 6 1141 216 231 0 0 chr3 72951789 72951828 -86647955 - B1F1 SINE Alu -99 50 12 6 1141 375 202 69 147 chr3 72951809 72951925 -86647858 - MT2B LTR ERVL -314 287 181 6 1141 467 215 44 14 chr3 72951839 72951983 -86647800 - RMER6C LTR ERVK -539 181 35 6 1141 904 269 14 14 chr3 72951963 72952174 -86647609 + B3 SINE B2 6 216 0 6 1141 237 245 39 48 chr3 72952329 72952432 -86647351 + Lx8 LINE L1 7364 7465 -8 6 1141 1361 56 0 6 chr3 72952913 72953093 -86646690 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 6 1141 1634 155 3 11 chr3 72953096 72953383 -86646400 - Lx3A LINE L1 0 6981 6697 6 1141 24 53 0 0 chr3 72953929 72953967 -86645816 + AT_rich Low_complexity Low_complexity 1 38 0 6 1141 297 135 0 0 chr3 72954578 72954630 -86645153 + (TAAA)n Simple_repeat Simple_repeat 4 55 0 6 1141 439 325 34 51 chr3 72955703 72955881 -86643902 - B3 SINE B2 -40 176 2 6 1141 564 77 0 0 chr3 72955999 72956077 -86643706 + (TTTCC)n Simple_repeat Simple_repeat 3 80 0 6 1141 552 126 0 0 chr3 72956799 72956886 -86642897 + (TTTC)n Simple_repeat Simple_repeat 2 88 0 6 1141 293 47 0 23 chr3 72957447 72957491 -86642292 + (TA)n Simple_repeat Simple_repeat 2 44 0 6 1141 516 72 0 0 chr3 72958426 72958495 -86641288 + (GA)n Simple_repeat Simple_repeat 2 70 0 6 1141 747 304 122 30 chr3 72959019 72959153 -86640630 + Lx7 LINE L1 6831 6988 -708 6 1141 2796 68 0 5 chr3 72959153 72959520 -86640263 + L1Md_F2 LINE L1 6206 6570 -12 6 1141 747 304 122 30 chr3 72959520 72959754 -86640029 + Lx7 LINE L1 6989 7232 -464 6 1141 2312 171 139 58 chr3 72959754 72960392 -86639391 - RMER6C LTR ERVK 0 690 1 6 1141 224 328 15 0 chr3 72960932 72960999 -86638784 + B2_Mm2 SINE B2 1 68 -127 6 1141 498 33 0 0 chr3 72961060 72961120 -86638663 + (CA)n Simple_repeat Simple_repeat 1 60 0 6 1141 345 136 0 0 chr3 72961127 72961193 -86638590 + (TC)n Simple_repeat Simple_repeat 1 66 0 6 1141 4289 42 14 0 chr3 72961233 72961752 -86638031 - L1Md_F3 LINE L1 -15 6569 6044 6 1141 22 0 0 0 chr3 72962480 72962502 -86637281 + AT_rich Low_complexity Low_complexity 1 22 0 6 1141 1090 302 122 18 chr3 72963160 72964071 -86635712 - L1MA7 LINE L1 -6 6285 5280 6 1141 322 297 197 6 chr3 72964086 72964269 -86635514 - L1MA7 LINE L1 -931 5212 4995 6 1141 1060 302 76 25 chr3 72964593 72966008 -86633775 - L1MA4A LINE L1 -281 6010 4423 6 1141 928 313 117 30 chr3 72966339 72967511 -86632272 - L1MA4A LINE L1 -1727 4416 3143 6 1141 2605 268 66 68 chr3 72967521 72968543 -86631240 - RMER1B Other Other -4 1062 44 6 1141 4684 222 51 16 chr3 72969548 72971174 -86628609 + Lx6 LINE L1 5121 6771 -689 6 1141 5902 206 46 16 chr3 72971406 72972942 -86626841 - Lx2B LINE L1 -2 6998 5414 6 1141 1365 169 4 0 chr3 72972940 72973176 -86626607 + Lx2B LINE L1 5172 5408 -469 6 1141 544 184 18 35 chr3 72973174 72973287 -86626496 + Lx6 LINE L1 6768 6878 -818 6 1141 432 0 0 0 chr3 72973295 72973343 -86626440 + (CA)n Simple_repeat Simple_repeat 2 49 0 6 1141 248 180 27 91 chr3 72973343 72973453 -86626330 - RMER17A2 LTR ERVK -543 363 261 6 1141 2246 243 38 4 chr3 72973453 72973958 -86625825 + Lx6 LINE L1 6927 7448 -12 6 1141 483 223 0 0 chr3 72973964 72974076 -86625707 + (TA)n Simple_repeat Simple_repeat 2 113 0 6 1141 34 55 0 0 chr3 72974310 72974365 -86625418 + AT_rich Low_complexity Low_complexity 1 55 0 6 1141 562 109 0 47 chr3 72974619 72974725 -86625058 - L1_Mus3 LINE L1 0 6638 6538 6 1141 26 0 0 0 chr3 72976028 72976054 -86623729 + AT_rich Low_complexity Low_complexity 1 26 0 6 1141 546 329 26 7 chr3 72976278 72976431 -86623352 - RSINE1 SINE B4 -1 164 9 6 1141 1139 304 10 10 chr3 72976510 72976809 -86622974 + MTE2a LTR MaLR 73 371 -8 6 1141 1053 263 219 7 chr3 72977072 72977497 -86622286 - RMER15 LTR ERVL 0 575 61 6 1141 677 329 39 60 chr3 72977694 72978108 -86621675 - MTD LTR MaLR -14 405 1 6 1141 188 383 57 26 chr3 72978722 72978915 -86620868 - MIRb SINE MIR -26 242 44 6 1141 270 235 0 0 chr3 72979072 72979153 -86620630 + CT-rich Low_complexity Low_complexity 1 81 0 6 1141 4543 12 0 0 chr3 72979391 72979904 -86619879 + L1Md_A LINE L1 6070 6582 0 6 1141 2399 91 12 0 chr3 72981095 72981426 -86618357 - Lx3A LINE L1 -207 6774 6440 6 1141 1020 199 9 22 chr3 72981427 72981645 -86618138 + Lx3A LINE L1 6753 6967 -14 6 1141 378 0 0 0 chr3 72981645 72981687 -86618096 + (TAAA)n Simple_repeat Simple_repeat 3 44 0 6 1141 1020 199 9 22 chr3 72981687 72981699 -86618084 + Lx3A LINE L1 6968 6979 -2 6 1141 22 0 0 0 chr3 72981734 72981756 -86618027 + AT_rich Low_complexity Low_complexity 1 22 0 6 1141 458 76 12 37 chr3 72982881 72982963 -86616820 - L1Md_F2 LINE L1 -12 6570 6491 6 1141 716 52 0 10 chr3 72983098 72983196 -86616587 + (TTTC)n Simple_repeat Simple_repeat 4 100 0 6 1141 3400 53 0 18 chr3 72983776 72984216 -86615567 - L1Md_F2 LINE L1 0 6582 6151 6 1141 1284 43 14 0 chr3 72984359 72984777 -86615006 + (TCTA)n Simple_repeat Simple_repeat 1 424 0 6 1141 478 252 120 16 chr3 72984794 72984919 -86614864 - B1_Mus2 SINE Alu -9 138 1 6 1141 515 378 45 11 chr3 72984948 72985213 -86614570 + B4A SINE B4 1 274 -18 6 1141 231 193 18 0 chr3 72985374 72985431 -86614352 + RMER6A LTR ERVK 105 162 -528 6 1141 387 0 0 0 chr3 72985493 72985536 -86614247 + (CA)n Simple_repeat Simple_repeat 2 44 0 6 1141 602 82 0 0 chr3 72985768 72985853 -86613930 - L1_Mus2 LINE L1 -2 6564 6480 6 1141 248 32 0 0 chr3 72985853 72985884 -86613899 + L1_Mus2 LINE L1 6436 6466 -100 6 1141 1391 194 192 48 chr3 72985886 72986037 -86613746 + RMER6A LTR ERVK 153 336 -420 6 1141 374 88 15 0 chr3 72986037 72986105 -86613678 + (CAGA)n Simple_repeat Simple_repeat 4 72 0 6 1141 1391 206 147 80 chr3 72986105 72986534 -86613249 + RMER6A LTR ERVK 307 675 -45 6 1141 2974 137 30 41 chr3 72986534 72987099 -86612684 + RLTR31_Mm LTR ERVK 3 561 0 6 1141 1218 232 40 156 chr3 72987099 72987139 -86612644 + RMER6A LTR ERVK 676 709 -11 6 1141 450 0 0 0 chr3 72987142 72987192 -86612591 + (TTA)n Simple_repeat Simple_repeat 1 50 0 6 1141 618 238 0 23 chr3 72987195 72987324 -86612459 - B1_Mus1 SINE Alu -7 141 16 6 1141 1321 69 0 6 chr3 72987325 72987500 -86612283 + B2_Mm2 SINE B2 2 175 -20 6 1141 621 27 0 0 chr3 72988849 72988924 -86610859 + (TC)n Simple_repeat Simple_repeat 2 76 0 6 1141 207 176 29 0 chr3 72989047 72989110 -86610673 + A-rich Low_complexity Low_complexity 1 64 0 6 1141 2396 183 164 13 chr3 72989193 72989724 -86610059 + RMER19C LTR ERVK 1 611 0 6 1141 21 36 0 0 chr3 72990125 72990153 -86609630 + AT_rich Low_complexity Low_complexity 1 28 0 6 1141 2030 157 43 94 chr3 72990759 72991196 -86608587 - Lx3B LINE L1 0 6973 6559 6 1141 799 302 54 29 chr3 72991407 72991683 -86608100 - B4A SINE B4 -2 290 8 6 1141 435 38 0 0 chr3 72991912 72991965 -86607818 + (CA)n Simple_repeat Simple_repeat 2 54 0 6 1141 387 0 0 0 chr3 72992045 72992088 -86607695 + (TA)n Simple_repeat Simple_repeat 2 44 0 6 1141 441 0 0 0 chr3 72992107 72992156 -86607627 + (TG)n Simple_repeat Simple_repeat 1 49 0 6 1141 248 282 0 0 chr3 72992302 72992373 -86607410 - L1M3 LINE L1 -2393 3747 3677 6 1141 318 321 41 20 chr3 72992872 72993069 -86606714 - L1MC4 LINE L1 -4549 1666 1466 6 1141 758 313 25 74 chr3 72993243 72993567 -86606216 + ORR1D2 LTR MaLR 8 315 -55 7 1141 314 159 0 14 chr3 72993567 72993629 -86606154 + CT-rich Low_complexity Low_complexity 8 69 0 7 1141 3108 48 27 0 chr3 72993629 72994004 -86605779 - IAPEY_LTR LTR ERVK 0 385 1 7 1141 220 70 23 23 chr3 72994368 72994412 -86605371 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 7 1141 576 375 61 33 chr3 72995667 72996061 -86603722 + MTD LTR MaLR 1 405 -14 7 1141 33 56 0 0 chr3 72996075 72996129 -86603654 + AT_rich Low_complexity Low_complexity 1 54 0 7 1141 362 85 17 0 chr3 72996180 72996239 -86603544 + (TA)n Simple_repeat Simple_repeat 2 61 0 7 1141 1119 240 68 34 chr3 72996491 72996784 -86602999 + Lx5 LINE L1 6748 7050 0 7 1141 1373 48 21 5 chr3 72997637 72997827 -86601956 - L1Md_F3 LINE L1 0 6584 6392 7 1141 3577 198 25 18 chr3 72998410 72999232 -86600551 + L1_Mur3 LINE L1 4666 5493 -387 7 1141 1176 327 85 15 chr3 72999229 72999880 -86599903 + Lx5 LINE L1 6416 7032 -18 7 1141 471 351 94 5 chr3 73000045 73000257 -86599526 - B4A SINE B4 -60 232 2 1 1141 254 310 37 65 chr3 73000295 73000308 -86599475 + B1F1 SINE Alu 14 25 -124 2 1141 195 42 0 0 chr3 73000308 73000332 -86599451 + (TA)n Simple_repeat Simple_repeat 2 25 0 3 1141 294 310 37 65 chr3 73000332 73000425 -86599358 + PB1D7 SINE Alu 25 117 -32 2 1141 22 0 0 0 chr3 73001319 73001341 -86598442 + AT_rich Low_complexity Low_complexity 1 22 0 4 1141 607 297 68 4 chr3 73002116 73002380 -86597403 - L1MA9 LINE L1 -11 6301 6021 5 1141 1145 224 8 20 chr3 73002450 73002701 -86597082 - Lx6 LINE L1 -649 6811 6564 6 1141 7172 246 61 30 chr3 73002745 73003156 -86596627 - Lx7 LINE L1 -8 7688 7260 7 1141 2460 176 25 12 chr3 73003156 73003644 -86596139 + Lx2B LINE L1 6493 6986 -14 8 1141 7172 242 69 24 chr3 73003644 73005877 -86593906 - Lx7 LINE L1 -437 7259 4934 7 1141 5086 40 5 3 chr3 73005977 73006603 -86593180 - L1Md_F3 LINE L1 -12 6572 5946 9 142 2023 217 109 52 chr3 73006603 73007310 -86592473 - Lx7 LINE L1 -3019 2861 2122 7 1142 459 0 0 0 chr3 73007333 73007384 -86592399 + (TG)n Simple_repeat Simple_repeat 1 51 0 1 1142 807 80 0 0 chr3 73007384 73007508 -86592275 + (GA)n Simple_repeat Simple_repeat 1 125 0 1 1142 986 284 80 109 chr3 73007516 73007994 -86591789 - MT2A LTR ERVL -68 465 2 1 1142 1777 231 25 21 chr3 73008448 73008922 -86590861 - L1_Mur3 LINE L1 -775 5105 4630 1 1142 352 327 17 46 chr3 73009165 73009345 -86590438 - MLT1A0 LTR MaLR -167 198 28 1 1142 291 282 9 0 chr3 73009347 73009457 -86590326 - L1M3 LINE L1 -886 5254 5144 1 1142 422 358 29 0 chr3 73010899 73011072 -86588711 + AmnSINE1 SINE SINE 223 400 -175 1 1142 870 249 73 44 chr3 73011690 73011938 -86587845 - 7SK RNA RNA -74 257 3 1 1142 1538 58 0 0 chr3 73012996 73013184 -86586599 + L1Md_F2 LINE L1 5399 5586 -297 1 1142 7025 92 10 4 chr3 73013184 73014162 -86585621 + L1Md_F2 LINE L1 5587 6570 -12 1 1142 511 97 39 0 chr3 73014304 73014407 -86585376 + (TCTG)n Simple_repeat Simple_repeat 2 108 0 1 1142 396 0 0 0 chr3 73015039 73015083 -86584700 + (TCTA)n Simple_repeat Simple_repeat 3 46 0 2 1142 22 56 0 0 chr3 73015141 73015177 -86584606 + AT_rich Low_complexity Low_complexity 1 36 0 2 1142 337 313 38 66 chr3 73015177 73015283 -86584500 + PB1D10 SINE Alu 15 117 0 2 1142 668 285 45 0 chr3 73015670 73015870 -86583913 - B3 SINE B2 -6 210 2 2 1142 25 0 0 0 chr3 73015915 73015940 -86583843 + AT_rich Low_complexity Low_complexity 1 25 0 2 1142 38 93 0 0 chr3 73016214 73016322 -86583461 + AT_rich Low_complexity Low_complexity 1 108 0 2 1142 1043 203 32 6 chr3 73016566 73016849 -86582934 + ORR1B1 LTR MaLR 1 336 -38 2 1142 1150 238 31 42 chr3 73017967 73018352 -86581431 + Lx9 LINE L1 7229 7643 -1 2 1142 1038 175 60 28 chr3 73018723 73018940 -86580843 - URR1B DNA MER1_type -1 224 1 2 1142 1933 200 19 23 chr3 73019267 73019846 -86579937 + Lx6 LINE L1 5478 6057 -1403 2 1142 206 290 284 0 chr3 73020133 73020274 -86579509 + MIR SINE MIR 23 208 -60 3 1142 609 244 63 103 chr3 73021479 73021898 -86577885 + RMER2 LTR ERV1 1 507 -60 3 1142 227 322 17 0 chr3 73022611 73022670 -86577113 + ID4_ SINE ID 4 63 -20 3 1142 356 317 85 51 chr3 73022699 73023041 -86576742 + L1MA6 LINE L1 5448 5797 -503 3 1142 596 77 11 0 chr3 73023041 73023132 -86576651 + (CA)n Simple_repeat Simple_repeat 1 92 0 3 1142 356 317 85 51 chr3 73023132 73023238 -86576545 + L1MA6 LINE L1 5798 5910 -390 3 1142 261 294 87 0 chr3 73023836 73023928 -86575855 - B3 SINE B2 0 216 117 3 1142 249 320 13 26 chr3 73023928 73024005 -86575778 + 4.5SRNA scRNA scRNA 12 87 -7 3 1142 183 80 0 0 chr3 73024147 73024172 -86575611 + (TA)n Simple_repeat Simple_repeat 1 25 0 3 1142 21 36 0 0 chr3 73024356 73024384 -86575399 + AT_rich Low_complexity Low_complexity 1 28 0 3 1142 254 290 137 77 chr3 73024775 73024958 -86574825 + RMER2 LTR ERV1 346 539 -28 3 1142 21 0 0 0 chr3 73025013 73025034 -86574749 + AT_rich Low_complexity Low_complexity 1 21 0 4 1142 750 294 5 9 chr3 73025088 73025304 -86574479 + B3 SINE B2 1 215 -1 4 1142 25 51 0 0 chr3 73025304 73025343 -86574440 + AT_rich Low_complexity Low_complexity 1 39 0 4 1142 7943 114 26 20 chr3 73025504 73026517 -86573266 + Lx3_Mus LINE L1 5397 6408 -601 4 1142 1065 82 7 20 chr3 73026517 73026653 -86573130 + B1_Mus1 SINE Alu 2 138 -10 4 1142 240 35 0 0 chr3 73026653 73026682 -86573101 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 4 1142 1065 82 7 20 chr3 73026682 73026694 -86573089 + B1_Mus1 SINE Alu 139 148 0 4 1142 623 47 0 23 chr3 73026700 73026788 -86572995 + (GAAA)n Simple_repeat Simple_repeat 3 88 0 4 1142 7943 133 26 38 chr3 73026788 73027433 -86572350 + Lx3_Mus LINE L1 6409 6987 -22 4 1142 554 293 102 7 chr3 73028480 73028765 -86571018 - L1MC LINE L1 -1910 4236 3925 4 1142 222 128 0 0 chr3 73029131 73029170 -86570613 + (TAGA)n Simple_repeat Simple_repeat 2 40 0 4 1142 276 130 74 0 chr3 73029649 73029703 -86570080 - Lx7 LINE L1 0 7696 7639 4 1142 288 0 0 0 chr3 73029706 73029738 -86570045 + (TTG)n Simple_repeat Simple_repeat 2 33 0 5 1142 3128 254 8 12 chr3 73029856 73030589 -86569194 - Lx7 LINE L1 -279 7417 6688 5 1142 1833 219 176 9 chr3 73030765 73031379 -86568404 - Lx4B LINE L1 -73 6985 6158 5 1142 871 126 16 82 chr3 73031375 73031453 -86568330 - L1_Mur2 LINE L1 -1492 4385 4317 5 1142 5972 89 0 4 chr3 73031453 73032263 -86567520 - L1Md_F2 LINE L1 -4 6578 5772 5 1142 871 126 16 82 chr3 73032263 73032366 -86567417 - L1_Mur2 LINE L1 -1561 4316 4216 5 1142 9185 95 20 52 chr3 73032359 73033868 -86565915 - Lx3_Mus LINE L1 -486 5400 3941 5 1142 8240 107 39 0 chr3 73033866 73034370 -86565413 + Lx3_Mus LINE L1 5390 5909 -1100 5 1142 222 37 0 0 chr3 73034370 73034397 -86565386 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 5 1142 8240 145 22 6 chr3 73034397 73035478 -86564305 + Lx3_Mus LINE L1 5910 7008 -1 5 1142 1603 170 17 46 chr3 73035492 73035843 -86563940 - L1_Mur2 LINE L1 -1647 4230 3890 5 1142 27 49 0 0 chr3 73035968 73036009 -86563774 + AT_rich Low_complexity Low_complexity 1 41 0 5 1142 21 0 0 0 chr3 73037530 73037551 -86562232 + AT_rich Low_complexity Low_complexity 1 21 0 5 1142 248 137 0 19 chr3 73038180 73038232 -86561551 + CT-rich Low_complexity Low_complexity 2 52 0 5 1142 794 248 63 21 chr3 73038257 73038496 -86561287 - Lx6 LINE L1 -27 7433 7185 6 1142 657 0 0 0 chr3 73038628 73038701 -86561082 + (GA)n Simple_repeat Simple_repeat 2 74 0 6 1142 519 254 135 36 chr3 73039046 73039238 -86560545 - MTD LTR MaLR -14 405 195 6 1142 521 278 0 40 chr3 73039246 73039396 -86560387 - B1_Mur1 SINE Alu 0 149 6 6 1142 400 363 54 19 chr3 73039385 73039590 -86560193 - MTD LTR MaLR -197 222 11 6 1142 396 167 0 0 chr3 73039834 73039906 -86559877 + (TA)n Simple_repeat Simple_repeat 1 72 0 6 1142 189 107 0 0 chr3 73039912 73039940 -86559843 + (TAA)n Simple_repeat Simple_repeat 1 28 0 6 1142 346 368 32 0 chr3 73039949 73040074 -86559709 - ID_B1 SINE B4 -10 214 86 6 1142 6297 43 0 0 chr3 73040082 73040843 -86558940 + L1Md_T LINE L1 5822 6582 0 6 1142 26 82 0 0 chr3 73041065 73041126 -86558657 + AT_rich Low_complexity Low_complexity 1 61 0 6 1142 303 353 58 14 chr3 73041449 73041587 -86558196 - LTR16A LTR ERVL -86 365 222 6 1142 911 115 0 7 chr3 73042540 73042689 -86557094 + (TTTC)n Simple_repeat Simple_repeat 1 148 0 7 1142 339 85 0 0 chr3 73042689 73042736 -86557047 + (CAT)n Simple_repeat Simple_repeat 2 48 0 7 1142 3056 73 28 2 chr3 73042738 73043166 -86556617 - L1_Mus4 LINE L1 -18 6618 6180 7 1142 21 57 0 0 chr3 73045403 73045438 -86554345 + AT_rich Low_complexity Low_complexity 1 35 0 7 1142 462 335 68 105 chr3 73046254 73046548 -86553235 + B4 SINE B4 10 292 0 7 1142 22888 11 1 0 chr3 73046717 73050024 -86549759 - L1Md_A LINE L1 -1 6581 3270 7 1142 25 51 0 0 chr3 73050406 73050445 -86549338 + AT_rich Low_complexity Low_complexity 1 39 0 7 1142 3613 84 2 18 chr3 73051232 73051743 -86548040 - L1_Mus2 LINE L1 0 6566 6064 7 1142 247 224 90 0 chr3 73053248 73053315 -86546468 + B1_Mur2 SINE Alu 77 149 0 7 1142 188 67 0 32 chr3 73053939 73053970 -86545813 + (TTA)n Simple_repeat Simple_repeat 3 32 0 7 1142 470 371 14 0 chr3 73054299 73054442 -86545341 - RSINE1 SINE B4 -18 147 3 8 1142 39 0 0 0 chr3 73054565 73054604 -86545179 + AT_rich Low_complexity Low_complexity 1 39 0 8 1142 515 275 163 26 chr3 73055093 73055437 -86544346 - Lx7 LINE L1 -6 7690 7300 8 1142 602 229 151 5 chr3 73055433 73055639 -86544144 - L1_Mur3 LINE L1 -1534 4346 4111 8 1142 4376 16 2 0 chr3 73055644 73056136 -86543647 + MT2_Mm LTR ERVL 1 493 0 8 1142 40488 16 14 0 chr3 73056136 73061423 -86538360 + MERVL-int LTR ERVL 1 5360 -125 8 1142 392 167 46 35 chr3 73061423 73061510 -86538273 + ORR1A3-int LTR MaLR 553 640 -1323 8 1142 314 0 0 0 chr3 73061510 73061548 -86538235 + MERVL-int LTR ERVL 5448 5485 0 8 1142 4376 16 2 0 chr3 73061548 73062040 -86537743 + MT2_Mm LTR ERVL 1 493 0 8 1142 258 143 159 0 chr3 73062044 73062107 -86537676 - L1_Mur3 LINE L1 -1774 4106 4034 8 1142 487 282 42 14 chr3 73062464 73062608 -86537175 + B1_Mur1 SINE Alu 1 148 -1 8 1142 2687 40 0 0 chr3 73064025 73064352 -86535431 + L1Md_A LINE L1 6256 6582 0 8 1142 5098 113 4 1 chr3 73064435 73065189 -86534594 - L1_Mus4 LINE L1 -4 6632 5877 8 1142 12530 67 11 65 chr3 73065483 73065833 -86533950 - RLTR22_Mus LTR ERVK -4 1804 1533 8 1142 2341 85 87 15 chr3 73065833 73066168 -86533615 + RLTR10D LTR ERVK 1 359 0 9 1142 12530 67 11 65 chr3 73066168 73066395 -86533388 - RLTR22_Mus LTR ERVK -276 1532 1311 8 1142 438 36 0 0 chr3 73066395 73066451 -86533332 + (CA)n Simple_repeat Simple_repeat 2 57 0 9 1142 12530 67 11 65 chr3 73066451 73067123 -86532660 - RLTR22_Mus LTR ERVK -498 1310 649 8 1142 3245 21 39 0 chr3 73067123 73067504 -86532279 - MTA_Mm LTR MaLR 0 396 1 9 1142 8640 34 34 2 chr3 73067506 73068568 -86531215 - MTA_Mm-int LTR MaLR -2 1096 1 9 1142 3245 21 39 0 chr3 73068568 73068949 -86530834 - MTA_Mm LTR MaLR 0 396 1 9 1142 12530 67 11 65 chr3 73068949 73069598 -86530185 - RLTR22_Mus LTR ERVK -1160 648 2 8 1142 198 405 128 52 chr3 73069635 73069924 -86529859 + L2 LINE L2 2707 3017 -402 9 1142 1354 152 4 4 chr3 73070720 73070957 -86528826 - Lx2A1 LINE L1 -8 7000 6764 9 1142 2648 248 52 17 chr3 73071739 73071835 -86527948 - Lx5 LINE L1 0 7050 6964 9 1142 815 20 10 0 chr3 73071835 73071936 -86527847 + (CA)n Simple_repeat Simple_repeat 2 103 0 9 1142 2648 248 52 17 chr3 73071936 73072476 -86527307 - Lx5 LINE L1 -87 6963 6393 9 1142 26 30 0 0 chr3 73072820 73072853 -86526930 + AT_rich Low_complexity Low_complexity 1 33 0 9 1142 313 274 126 0 chr3 73073502 73073597 -86526186 - PB1 SINE Alu -1 126 20 9 1142 180 0 0 0 chr3 73073670 73073690 -86526093 + (TTAA)n Simple_repeat Simple_repeat 4 23 0 9 1142 249 273 65 24 chr3 73073742 73073866 -86525917 - BLACKJACK DNA AcHobo -637 2307 2179 1 1142 22 0 0 0 chr3 73073993 73074015 -86525768 + AT_rich Low_complexity Low_complexity 1 22 0 1 1142 557 259 100 41 chr3 73074158 73074453 -86525330 - MLT1A LTR MaLR -29 361 28 1 1142 658 87 14 42 chr3 73074740 73074884 -86524899 + (TATG)n Simple_repeat Simple_repeat 4 143 0 1 1142 24 32 0 0 chr3 73074933 73074964 -86524819 + AT_rich Low_complexity Low_complexity 1 31 0 1 1142 3259 222 40 9 chr3 73075115 73075792 -86523991 - Lx5 LINE L1 -8 7042 6345 1 1142 714 132 29 43 chr3 73075792 73075932 -86523851 + L1_Mur2 LINE L1 5067 5213 -673 1 1142 397 350 77 42 chr3 73075958 73076387 -86523396 - BLACKJACK DNA AcHobo -1616 1328 885 1 1142 234 0 0 0 chr3 73076508 73076534 -86523249 + (TA)n Simple_repeat Simple_repeat 1 26 0 1 1142 180 384 10 10 chr3 73077205 73077305 -86522478 - L2 LINE L2 -1030 2389 2290 1 1142 305 385 33 28 chr3 73077423 73077637 -86522146 - MLT1D LTR MaLR -24 481 267 1 1142 2659 84 0 0 chr3 73077720 73078064 -86521719 - L1_Mus1 LINE L1 -180 5703 5360 1 1142 7174 60 0 0 chr3 73078067 73078957 -86520826 + L1_Mus1 LINE L1 5678 6567 0 1 1142 4187 58 0 0 chr3 73078984 73079506 -86520277 + L1Md_F2 LINE L1 5065 5586 -297 1 1142 7960 50 2 1 chr3 73079506 73080501 -86519282 + L1Md_F2 LINE L1 5587 6582 0 1 1142 241 303 98 0 chr3 73081021 73081143 -86518640 - MLT1D LTR MaLR -343 162 29 1 1142 348 319 32 48 chr3 73081316 73081504 -86518279 + MER33 DNA MER1_type 3 187 -137 1 1142 522 0 0 0 chr3 73082546 73082604 -86517179 + (GAAA)n Simple_repeat Simple_repeat 3 60 0 1 1142 1307 55 87 0 chr3 73082636 73082819 -86516964 - L1Md_F2 LINE L1 -2 6580 6382 1 1142 14043 34 3 1 chr3 73082826 73085188 -86514595 - L1Md_F2 LINE L1 0 6582 4216 1 1142 5458 86 0 1 chr3 73085184 73085926 -86513857 - L1_Mm LINE L1 -670 5213 4473 1 1142 222 252 6 41 chr3 73085926 73085999 -86513784 - MIRc SINE MIR -81 127 60 1 1142 229 321 83 0 chr3 73086456 73086540 -86513243 - MIRm SINE MIR -120 156 66 1 1142 5954 119 22 18 chr3 73087048 73088003 -86511780 - L1_Mur1 LINE L1 -119 5767 4809 1 1142 2317 107 52 5 chr3 73088001 73088369 -86511414 + L1_Mur1 LINE L1 4426 4810 -1076 1 1142 5739 49 3 1 chr3 73088381 73089097 -86510686 - L1Md_F2 LINE L1 0 6582 5866 1 1142 743 304 48 65 chr3 73090249 73090594 -86509189 - MTE2a LTR MaLR -28 391 46 1 1142 771 84 14 34 chr3 73091071 73091219 -86508564 - L1_Mus3 LINE L1 0 6638 6494 1 1142 24 67 0 0 chr3 73092369 73092414 -86507369 + AT_rich Low_complexity Low_complexity 1 45 0 1 1142 595 51 0 48 chr3 73092770 73092853 -86506930 - L1_Mus2 LINE L1 -204 6362 6284 1 1142 4725 53 2 0 chr3 73093142 73093724 -86506059 + L1Md_F2 LINE L1 6000 6582 0 1 1142 437 274 18 104 chr3 73096016 73096179 -86503604 + B1_Mur2 SINE Alu 1 149 0 1 1142 276 342 37 16 chr3 73096416 73096606 -86503177 + Lx9 LINE L1 7170 7363 -281 1 1142 205 214 0 23 chr3 73096643 73096686 -86503097 - L3 LINE CR1 -2738 1751 1710 1 1142 3475 247 79 17 chr3 73096821 73097817 -86501966 - Lx9 LINE L1 0 7644 6587 1 1142 486 301 13 19 chr3 73097884 73098043 -86501740 + Lx9 LINE L1 6392 6549 -1095 1 1142 23 0 0 0 chr3 73098315 73098338 -86501445 + AT_rich Low_complexity Low_complexity 1 23 0 1 1142 1653 34 0 5 chr3 73098884 73099090 -86500693 - L1_Mus1 LINE L1 -1 6566 6362 1 1142 5459 104 0 2 chr3 73099090 73099882 -86499901 + L1_Mm LINE L1 4216 5005 -878 1 1142 436 322 7 47 chr3 73100698 73100729 -86499054 - B3A SINE B2 -10 188 164 1 1142 489 121 0 0 chr3 73100729 73100812 -86498971 + (TG)n Simple_repeat Simple_repeat 2 84 0 1 1142 436 322 7 47 chr3 73100812 73100930 -86498853 - B3A SINE B2 -35 163 45 1 1142 24 0 0 0 chr3 73101004 73101028 -86498755 + AT_rich Low_complexity Low_complexity 1 24 0 1 1142 29 28 0 0 chr3 73102154 73102190 -86497593 + AT_rich Low_complexity Low_complexity 1 36 0 1 1142 21 71 0 0 chr3 73102250 73102292 -86497491 + AT_rich Low_complexity Low_complexity 1 42 0 1 1142 3973 65 77 2 chr3 73102755 73103276 -86496507 + LTRIS2 LTR ERV1 5 564 0 1 1142 655 40 0 0 chr3 73103582 73103658 -86496125 + L1Md_A LINE L1 5511 5586 -297 1 1142 8424 31 1 0 chr3 73103658 73104651 -86495132 + L1Md_A LINE L1 5587 6580 -2 1 1142 1605 205 11 114 chr3 73105477 73105950 -86493833 + RLTR23 LTR ERV1 7 430 0 1 1142 34075 61 3 10 chr3 73106378 73111569 -86488214 + L1Md_F2 LINE L1 438 5585 -298 1 1142 7776 55 5 1 chr3 73111570 73112548 -86487235 + L1Md_F2 LINE L1 5587 6568 -14 1 1142 1060 222 53 4 chr3 73113001 73113272 -86486511 + MTC LTR MaLR 1 273 -127 1 1142 920 247 18 18 chr3 73113238 73113465 -86486318 + ORR1C2 LTR MaLR 156 382 -2 1 1142 387 0 0 0 chr3 73113643 73113686 -86486097 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 1142 721 274 60 30 chr3 73113922 73114257 -86485526 + L1MC1 LINE L1 5385 5729 -604 1 1142 360 0 0 0 chr3 73114373 73114413 -86485370 + (TAAA)n Simple_repeat Simple_repeat 3 42 0 1 1142 849 272 12 47 chr3 73114435 73114693 -86485090 - Lx6 LINE L1 -634 6826 6578 1 1142 361 303 0 10 chr3 73114702 73114802 -86484981 - Lx6 LINE L1 -90 7370 7272 1 1142 413 276 72 32 chr3 73114888 73115109 -86484674 + L1MC1 LINE L1 5824 6053 -280 1 1142 505 123 9 9 chr3 73115118 73115225 -86484558 + (TA)n Simple_repeat Simple_repeat 2 108 0 1 1142 210 91 0 0 chr3 73116209 73116242 -86483541 + (CAAA)n Simple_repeat Simple_repeat 3 35 0 1 1142 1820 215 39 17 chr3 73117691 73118103 -86481680 + MTC LTR MaLR 1 421 0 1 1142 609 150 137 16 chr3 73118230 73118413 -86481370 + Lx9 LINE L1 7439 7643 -1 1 1142 1123 226 72 83 chr3 73118829 73119109 -86480674 + ORR1C2 LTR MaLR 3 264 -120 1 1142 396 0 0 0 chr3 73119109 73119153 -86480630 + (TAA)n Simple_repeat Simple_repeat 3 46 0 1 1142 1123 226 72 83 chr3 73119153 73119258 -86480525 + ORR1C2 LTR MaLR 265 384 0 1 1142 3070 239 55 24 chr3 73119258 73120123 -86479660 + ORR1C2-int LTR MaLR 1 892 -478 1 1142 327 65 0 0 chr3 73120258 73120304 -86479479 + (TG)n Simple_repeat Simple_repeat 1 46 0 1 1142 387 0 0 0 chr3 73120701 73120744 -86479039 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 1142 549 184 6 44 chr3 73121223 73121405 -86478378 + GA-rich Low_complexity Low_complexity 5 179 0 1 1142 377 341 32 53 chr3 73121537 73121645 -86478138 - L1MC3 LINE L1 -96 7689 7588 1 1142 719 36 9 9 chr3 73121645 73121757 -86478026 - L1Md_F2 LINE L1 0 6582 6471 1 1142 2979 54 0 0 chr3 73121753 73122126 -86477657 - L1Md_T LINE L1 0 6582 6210 1 1142 377 341 32 53 chr3 73122126 73122450 -86477333 - L1MC3 LINE L1 -198 7587 7266 1 1142 455 316 148 37 chr3 73122475 73122879 -86476904 - L1MC3 LINE L1 -587 7198 6750 1 1142 308 187 33 11 chr3 73122881 73122931 -86476852 + T-rich Low_complexity Low_complexity 46 96 0 1 1142 419 73 15 0 chr3 73122931 73122999 -86476784 + (TG)n Simple_repeat Simple_repeat 2 70 0 1 1142 308 187 33 11 chr3 73122999 73123040 -86476743 + T-rich Low_complexity Low_complexity 3 45 0 1 1142 416 350 36 82 chr3 73123040 73123457 -86476326 - L1MC3 LINE L1 -1009 6776 6379 1 1142 283 283 8 94 chr3 73123588 73123705 -86476078 - PB1D9 SINE Alu -12 108 2 1 1142 341 286 197 50 chr3 73123921 73124322 -86475461 - L1M5 LINE L1 -1816 4330 3871 1 1142 529 301 66 58 chr3 73124641 73124867 -86474916 - MER34A1 LTR ERV1 -357 230 3 1 1142 285 331 31 5 chr3 73124891 73125082 -86474701 - L1M5 LINE L1 -2479 3667 3472 1 1142 463 287 73 7 chr3 73125557 73125694 -86474089 - B1_Mur1 SINE Alu -1 148 3 1 1142 288 53 0 0 chr3 73126660 73126698 -86473085 + (TG)n Simple_repeat Simple_repeat 1 38 0 1 1142 322 333 0 11 chr3 73126801 73126889 -86472894 - RSINE1 SINE B4 -76 89 3 1 1142 195 42 0 0 chr3 73127873 73127897 -86471886 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 1 1142 22 0 0 0 chr3 73127997 73128019 -86471764 + AT_rich Low_complexity Low_complexity 1 22 0 1 1142 251 280 42 0 chr3 73128074 73128192 -86471591 + (TA)n Simple_repeat Simple_repeat 2 124 0 1 1142 30 0 0 0 chr3 73129451 73129481 -86470302 + AT_rich Low_complexity Low_complexity 1 30 0 1 1142 24 32 0 0 chr3 73130299 73130330 -86469453 + AT_rich Low_complexity Low_complexity 1 31 0 1 1142 210 252 17 34 chr3 73131753 73131872 -86467911 + A-rich Low_complexity Low_complexity 3 119 0 1 1142 3315 39 0 12 chr3 73131879 73132291 -86467492 - L1Md_T LINE L1 -419 6163 5757 1 1142 3554 42 0 0 chr3 73132291 73132722 -86467061 + L1Md_T LINE L1 6151 6581 -1 1 1142 242 235 0 0 chr3 73132756 73132807 -86466976 - Lx7 LINE L1 -441 7255 7205 1 1142 440 35 17 0 chr3 73132861 73132919 -86466864 + (TTCA)n Simple_repeat Simple_repeat 3 61 0 1 1142 1240 216 198 19 chr3 73133004 73133410 -86466373 - Lx6 LINE L1 -175 7521 6766 1 1142 2132 232 73 71 chr3 73136151 73137124 -86462659 + MTC-int LTR MaLR 108 1210 -48 1 1142 212 246 88 0 chr3 73137480 73137537 -86462246 + L2a LINE L2 3359 3420 -6 1 1142 882 29 0 0 chr3 73137578 73137683 -86462100 + (TC)n Simple_repeat Simple_repeat 2 106 0 1 1142 460 298 0 16 chr3 73137780 73137906 -86461877 - B4 SINE B4 -3 289 166 1 1142 237 317 207 8 chr3 73137844 73137965 -86461818 - B1_Mm SINE Alu 0 147 3 1 1142 196 30 61 0 chr3 73137972 73138005 -86461778 + (TTTTG)n Simple_repeat Simple_repeat 1 35 0 1 1142 272 294 35 0 chr3 73138020 73138105 -86461678 - B4 SINE B4 -203 89 2 1 1143 3388 89 0 51 chr3 73138734 73139243 -86460540 + L1Md_F2 LINE L1 6098 6580 -2 1 1143 24 53 0 0 chr3 73139387 73139425 -86460358 + AT_rich Low_complexity Low_complexity 1 38 0 1 1143 9124 25 5 3 chr3 73139425 73141184 -86458599 - L1Md_T LINE L1 0 6582 4818 1 1143 386 307 9 9 chr3 73141235 73141350 -86458433 - B3 SINE B2 -100 116 2 1 1143 258 32 0 0 chr3 73142264 73142295 -86457488 + (TG)n Simple_repeat Simple_repeat 2 32 0 1 1143 333 141 0 0 chr3 73142296 73142367 -86457416 + (CAGAGA)n Simple_repeat Simple_repeat 2 72 0 1 1143 2312 192 79 10 chr3 73142560 73143054 -86456729 - RLTR11A LTR ERVK 0 528 1 1 1143 238 224 15 114 chr3 73143436 73143567 -86456216 + Lx9 LINE L1 7506 7623 -21 1 1143 219 294 0 42 chr3 73144138 73144209 -86455574 - MIRb SINE MIR -11 257 190 1 1143 411 21 0 0 chr3 73144878 73144926 -86454857 + (CA)n Simple_repeat Simple_repeat 1 48 0 1 1143 413 314 24 24 chr3 73145104 73145231 -86454552 - ID_B1 SINE B4 -19 205 79 1 1143 347 0 0 23 chr3 73145777 73145821 -86453962 + (TTTA)n Simple_repeat Simple_repeat 1 43 0 1 1143 415 280 38 0 chr3 73145826 73145958 -86453825 - B1_Mur4 SINE Alu -13 137 1 1 1143 251 254 14 65 chr3 73145967 73146106 -86453677 - L1_Mur2 LINE L1 -3100 2777 2646 2 1143 256 330 0 0 chr3 73146722 73146837 -86452946 + A-rich Low_complexity Low_complexity 1 115 0 2 1143 22 35 0 0 chr3 73147156 73147185 -86452598 + AT_rich Low_complexity Low_complexity 1 29 0 2 1143 209 233 0 0 chr3 73147546 73147589 -86452194 + (TAA)n Simple_repeat Simple_repeat 1 43 0 2 1143 333 157 43 0 chr3 73147805 73147875 -86451908 + (TCTA)n Simple_repeat Simple_repeat 1 73 0 2 1143 771 146 0 0 chr3 73147875 73148005 -86451778 + (TCCG)n Simple_repeat Simple_repeat 3 132 0 2 1143 746 143 25 0 chr3 73147967 73148128 -86451655 + (TCTA)n Simple_repeat Simple_repeat 4 168 0 2 1143 10271 165 32 23 chr3 73148152 73151139 -86448644 - Lx3C LINE L1 -4 6972 3951 2 1143 511 180 9 18 chr3 73151135 73151248 -86448535 + MusHAL1 LINE L1 2003 2114 -598 2 1143 335 286 28 22 chr3 73151273 73151452 -86448331 - L1M2 LINE L1 -3278 2865 2686 2 1143 354 100 0 0 chr3 73151533 73151593 -86448190 + (TG)n Simple_repeat Simple_repeat 1 60 0 2 1143 306 0 0 0 chr3 73151593 73151627 -86448156 + (GA)n Simple_repeat Simple_repeat 1 34 0 2 1143 243 392 53 32 chr3 73151650 73151837 -86447946 - LTR16A1 LTR ERVL -8 448 258 2 1143 428 301 35 35 chr3 73151982 73152154 -86447629 + MLT2B4 LTR ERVL 48 219 -337 2 1143 379 345 46 27 chr3 73152168 73152430 -86447353 - RLTR15 LTR ERVK -17 342 76 2 1143 12869 98 8 3 chr3 73152515 73154447 -86445336 - L1_Mus1 LINE L1 0 6654 4631 2 1143 324 0 0 0 chr3 73154447 73154483 -86445300 + (TTTTG)n Simple_repeat Simple_repeat 4 39 0 2 1143 12869 114 9 5 chr3 73154483 73155164 -86444619 - L1_Mus1 LINE L1 -1253 4630 3949 2 1143 427 238 107 47 chr3 73155229 73155379 -86444404 - RLTR15 LTR ERVK -200 159 1 2 1143 352 328 73 29 chr3 73155398 73155602 -86444181 + MLT2B4 LTR ERVL 266 478 -78 2 1143 1011 258 37 31 chr3 73155602 73155921 -86443862 + MT2A LTR ERVL 3 474 -127 2 1143 195 235 0 0 chr3 73155947 73155998 -86443785 + (TATG)n Simple_repeat Simple_repeat 4 54 0 2 1143 1183 245 121 0 chr3 73156157 73156528 -86443255 - MTD LTR MaLR -3 416 1 2 1143 218 264 19 0 chr3 73157682 73157735 -86442048 - MIR SINE MIR -91 171 118 2 1143 26 30 0 0 chr3 73159773 73159806 -86439977 + AT_rich Low_complexity Low_complexity 1 33 0 2 1143 222 150 0 0 chr3 73160280 73160320 -86439463 + (TG)n Simple_repeat Simple_repeat 1 40 0 2 1143 396 349 103 48 chr3 73160320 73160591 -86439192 - B4A SINE B4 0 292 7 2 1143 24 32 0 0 chr3 73161026 73161057 -86438726 + AT_rich Low_complexity Low_complexity 1 31 0 2 1143 2632 235 132 24 chr3 73161246 73162005 -86437778 + Lx7 LINE L1 6184 7031 -665 2 1143 189 74 0 0 chr3 73162005 73162032 -86437751 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2 1143 2632 235 132 24 chr3 73162032 73162062 -86437721 + Lx7 LINE L1 7032 7058 -638 2 1143 3532 186 84 46 chr3 73162530 73163386 -86436397 - RMER19B LTR ERVK -13 889 1 2 1143 2391 100 141 0 chr3 73163561 73163741 -86436042 - BGLII_Mus LTR ERVK 0 422 243 2 1143 594 0 0 0 chr3 73163741 73163807 -86435976 + (TC)n Simple_repeat Simple_repeat 1 66 0 2 1143 2391 100 141 0 chr3 73163807 73163996 -86435787 - BGLII_Mus LTR ERVK -180 242 2 2 1143 804 164 176 0 chr3 73164555 73164714 -86435069 + B2_Mm2 SINE B2 2 188 -7 2 1143 1029 109 0 0 chr3 73164945 73165083 -86434700 - B1_Mus1 SINE Alu -10 138 1 2 1143 260 314 45 113 chr3 73165561 73165694 -86434089 + B2_Mm2 SINE B2 1 124 -71 2 1143 267 103 0 0 chr3 73165746 73165785 -86433998 + (GA)n Simple_repeat Simple_repeat 2 40 0 2 1143 276 222 0 0 chr3 73165957 73166011 -86433772 - MTE2b LTR MaLR -325 54 1 2 1143 420 243 37 9 chr3 73166308 73166416 -86433367 + MER5A1 DNA MER1_type 49 159 -7 2 1143 21 0 0 0 chr3 73166510 73166531 -86433252 + AT_rich Low_complexity Low_complexity 1 21 0 2 1143 1073 215 63 137 chr3 73166557 73166967 -86432816 + ORR1C2 LTR MaLR 5 384 0 2 1143 333 305 106 23 chr3 73167246 73167682 -86432101 - L1MC LINE L1 -2637 3509 3038 2 1143 2398 85 0 14 chr3 73167834 73168180 -86431603 + L1Md_F2 LINE L1 6230 6570 -12 2 1143 551 0 0 0 chr3 73168408 73168468 -86431315 + L1_Mm LINE L1 5527 5586 -297 2 1143 8114 42 2 1 chr3 73168468 73169450 -86430333 + L1Md_F2 LINE L1 5587 6569 -13 2 1143 606 122 0 0 chr3 73169529 73169627 -86430156 + (TA)n Simple_repeat Simple_repeat 2 99 0 2 1143 1720 211 65 82 chr3 73169627 73169808 -86429975 - Lx9 LINE L1 -10 7634 7481 2 1143 868 87 22 7 chr3 73169808 73169947 -86429836 + (CATATA)n Simple_repeat Simple_repeat 2 142 0 2 1143 1720 211 65 82 chr3 73169947 73170337 -86429446 - Lx9 LINE L1 -164 7480 7073 2 1143 543 238 14 27 chr3 73170332 73170479 -86429304 - Lx9 LINE L1 -713 6931 6787 2 1143 3088 211 56 34 chr3 73170518 73171235 -86428548 - RMER13A LTR ERVK -125 735 3 2 1143 1589 263 58 30 chr3 73171237 73171664 -86428119 - Lx9 LINE L1 -863 6781 6343 2 1143 5861 206 55 19 chr3 73171667 73173433 -86426350 + Lx6 LINE L1 4490 6357 -693 2 1143 440 300 89 30 chr3 73173466 73173695 -86426088 + Lx6 LINE L1 6507 6660 -390 2 1143 25 0 0 0 chr3 73175710 73175735 -86424048 + AT_rich Low_complexity Low_complexity 1 25 0 2 1143 262 408 67 13 chr3 73175758 73175907 -86423876 - RSINE1 SINE B4 -8 157 1 2 1143 211 221 113 42 chr3 73177343 73177414 -86422369 + MIR SINE MIR 161 236 -26 2 1143 832 315 5 0 chr3 73178510 73178710 -86421073 + B3 SINE B2 16 216 0 2 1143 213 65 0 0 chr3 73178771 73178802 -86420981 + (CAT)n Simple_repeat Simple_repeat 2 32 0 2 1143 396 209 0 0 chr3 73179057 73179148 -86420635 + T-rich Low_complexity Low_complexity 1 91 0 2 1143 698 270 19 48 chr3 73179408 73179614 -86420169 + B3 SINE B2 4 203 -13 2 1143 317 194 0 0 chr3 73179581 73179643 -86420140 + B3 SINE B2 144 205 -11 2 1143 378 0 0 0 chr3 73179644 73179686 -86420097 + (TAA)n Simple_repeat Simple_repeat 1 42 0 2 1143 261 297 65 40 chr3 73179896 73180096 -86419687 + L1ME2z LINE L1 5771 5975 -469 2 1143 790 365 80 11 chr3 73180329 73180780 -86419003 + MLT2B4 LTR ERVL 6 487 -69 2 1143 474 18 0 0 chr3 73181412 73181467 -86418316 + (TAGA)n Simple_repeat Simple_repeat 4 58 0 2 1143 22 0 0 0 chr3 73181639 73181661 -86418122 + AT_rich Low_complexity Low_complexity 1 22 0 2 1143 21 71 0 0 chr3 73181700 73181742 -86418041 + AT_rich Low_complexity Low_complexity 1 42 0 2 1143 1114 230 74 28 chr3 73181777 73182185 -86417598 + RLTR20B3 LTR ERVK 6 428 -106 2 1143 333 0 0 0 chr3 73182185 73182222 -86417561 + (TG)n Simple_repeat Simple_repeat 1 37 0 2 1143 1045 259 124 40 chr3 73182222 73182263 -86417520 + RLTR20B3 LTR ERVK 429 481 -53 2 1143 803 125 0 7 chr3 73182326 73182463 -86417320 + (GAAA)n Simple_repeat Simple_repeat 4 139 0 2 1143 358 246 44 164 chr3 73182466 73182826 -86416957 - Lx7 LINE L1 -125 7571 7255 2 1143 3337 107 88 48 chr3 73182850 73183379 -86416404 + Lx2 LINE L1 6361 6914 -83 2 1143 2690 107 38 48 chr3 73183379 73183859 -86415924 + IAPLTR2_Mm LTR ERVK 1 475 0 2 1143 3337 107 88 48 chr3 73183859 73183908 -86415875 + Lx2 LINE L1 6915 6962 -35 2 1143 225 0 0 0 chr3 73183908 73183933 -86415850 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 2 1143 2101 221 13 22 chr3 73183933 73184381 -86415402 - Lx7 LINE L1 -529 7167 6720 2 1143 3551 233 134 18 chr3 73184394 73185560 -86414223 - Lx7 LINE L1 -1091 6605 5254 2 1143 195 42 0 0 chr3 73185560 73185584 -86414199 + (TTTTG)n Simple_repeat Simple_repeat 3 26 0 2 1143 3551 207 77 18 chr3 73185584 73185927 -86413856 - Lx7 LINE L1 -627 5253 4888 2 1143 2051 246 14 19 chr3 73185915 73186503 -86413280 - Lx7 LINE L1 -2964 2916 2332 2 1143 771 57 0 24 chr3 73186524 73186649 -86413134 + (TTTC)n Simple_repeat Simple_repeat 3 124 0 2 1143 1160 191 4 4 chr3 73186782 73187014 -86412769 - Lx LINE L1 -8 6646 6415 2 1143 239 183 0 16 chr3 73187122 73187183 -86412600 - Lx7 LINE L1 -4254 1626 1567 2 1143 3222 231 76 24 chr3 73187218 73188473 -86411310 - Lx7 LINE L1 -4452 1428 110 2 1143 3066 215 112 41 chr3 73188537 73189180 -86410603 + Lx7 LINE L1 6804 7441 -255 2 1143 351 0 0 0 chr3 73189180 73189219 -86410564 + (TG)n Simple_repeat Simple_repeat 2 40 0 2 1143 3066 215 112 41 chr3 73189219 73189409 -86410374 + Lx7 LINE L1 7442 7695 -1 2 1143 2763 22 0 0 chr3 73189464 73189780 -86410003 + L1Md_F2 LINE L1 5270 5585 -298 2 1143 7372 62 18 5 chr3 73189781 73190763 -86409020 + L1Md_F2 LINE L1 5587 6581 -1 2 1143 25 0 0 0 chr3 73192171 73192196 -86407587 + AT_rich Low_complexity Low_complexity 1 25 0 2 1143 443 308 156 63 chr3 73193647 73194108 -86405675 + Lx8 LINE L1 6968 7471 -2 2 1143 21 0 0 0 chr3 73194831 73194852 -86404931 + AT_rich Low_complexity Low_complexity 1 21 0 2 1143 366 159 0 0 chr3 73195868 73195937 -86403846 + CT-rich Low_complexity Low_complexity 3 71 0 2 1143 926 348 68 20 chr3 73196152 73196529 -86403254 + Lx5 LINE L1 6125 6637 -413 2 1143 3260 166 41 11 chr3 73196529 73197140 -86402643 + Lx2B LINE L1 6372 7000 0 2 1143 962 279 51 83 chr3 73197140 73197571 -86402212 + Lx6 LINE L1 7018 7434 -26 2 1143 6639 75 0 7 chr3 73197684 73198556 -86401227 + L1_Mus1 LINE L1 5702 6567 0 2 1143 205 363 77 0 chr3 73198807 73198898 -86400885 - L2a LINE L2 -328 3098 3001 2 1143 400 18 17 17 chr3 73198915 73198973 -86400810 + (CAAAA)n Simple_repeat Simple_repeat 3 60 0 2 1143 250 356 81 25 chr3 73200184 73200425 -86399358 - MIRc SINE MIR -17 245 2 2 1143 186 71 0 0 chr3 73201428 73201456 -86398327 + (CAAAAA)n Simple_repeat Simple_repeat 2 29 0 2 1143 183 42 0 0 chr3 73201585 73201609 -86398174 + (CA)n Simple_repeat Simple_repeat 1 24 0 2 1143 1465 218 41 56 chr3 73202017 73202215 -86397568 + ORR1C1 LTR MaLR 3 198 -180 2 1143 1743 10 0 0 chr3 73202215 73202408 -86397375 - B2_Mm1t SINE B2 0 193 1 2 1143 1465 218 41 56 chr3 73202408 73202549 -86397234 + ORR1C1 LTR MaLR 199 337 -41 2 1143 268 196 0 0 chr3 73202552 73202603 -86397180 - Lx4A LINE L1 -699 6359 6309 2 1143 1012 162 0 0 chr3 73202613 73202767 -86397016 - B2_Mm2 SINE B2 -41 154 1 2 1143 487 139 24 32 chr3 73202887 73203013 -86396770 + (TTTA)n Simple_repeat Simple_repeat 1 125 0 2 1143 982 296 40 34 chr3 73203017 73203611 -86396172 + Lx8 LINE L1 5287 5926 -1547 2 1143 198 103 0 0 chr3 73203682 73203711 -86396072 + (TG)n Simple_repeat Simple_repeat 2 30 0 2 1143 189 0 0 0 chr3 73203744 73203765 -86396018 + (CAAA)n Simple_repeat Simple_repeat 4 24 0 2 1143 407 73 15 0 chr3 73204043 73204111 -86395672 + (TA)n Simple_repeat Simple_repeat 1 69 0 2 1143 225 227 27 0 chr3 73204118 73204193 -86395590 + (TTATA)n Simple_repeat Simple_repeat 5 81 0 2 1143 538 348 45 24 chr3 73204486 73204816 -86394967 + MER110 LTR ERV1 1 337 -154 2 1143 625 250 133 33 chr3 73205857 73206068 -86393715 + MTD LTR MaLR 186 417 -2 2 1143 344 312 51 88 chr3 73206087 73206377 -86393406 + ORR1E LTR MaLR 106 366 -4 3 1143 2685 130 19 51 chr3 73206796 73207282 -86392501 - Lx3_Mus LINE L1 -757 6252 5783 3 1143 7924 84 11 100 chr3 73207315 73209855 -86389928 - L1Md_F2 LINE L1 -1 6581 4526 3 1143 230 283 0 0 chr3 73209860 73209913 -86389870 + L1M2 LINE L1 2283 2335 -4514 3 1143 231 325 102 31 chr3 73212442 73212569 -86387214 - ORR1D2 LTR MaLR -234 136 1 3 1143 184 313 47 35 chr3 73213179 73213265 -86386518 - L2 LINE L2 -1893 1526 1440 3 1143 431 202 124 9 chr3 73214689 73214794 -86384989 - B1_Mur4 SINE Alu 0 150 34 3 1143 579 94 0 0 chr3 73214828 73214924 -86384859 + (TC)n Simple_repeat Simple_repeat 1 96 0 3 1143 189 0 0 0 chr3 73214924 73214945 -86384838 + (TG)n Simple_repeat Simple_repeat 2 22 0 3 1143 386 372 27 7 chr3 73214954 73215103 -86384680 - B3A SINE B2 -41 157 6 3 1143 200 200 0 20 chr3 73215313 73215364 -86384419 + CT-rich Low_complexity Low_complexity 3 52 0 3 1143 267 31 0 0 chr3 73215390 73215422 -86384361 + (TTTA)n Simple_repeat Simple_repeat 3 34 0 3 1143 293 333 78 0 chr3 73215430 73215532 -86384251 - B1F SINE Alu -15 134 25 3 1143 216 0 0 0 chr3 73216235 73216259 -86383524 + (T)n Simple_repeat Simple_repeat 1 24 0 3 1143 11345 177 31 119 chr3 73216858 73218775 -86381008 + Lx2B LINE L1 3061 4694 -1192 3 1143 4506 2 0 0 chr3 73218775 73219272 -86380511 + L1Md_A LINE L1 6086 6582 0 3 1143 11345 183 34 94 chr3 73219272 73221147 -86378636 + Lx2B LINE L1 4695 6567 0 3 1143 3358 180 7 3 chr3 73221160 73221744 -86378039 + Lx2B LINE L1 6386 6971 -29 3 1143 702 337 26 20 chr3 73222098 73222404 -86377379 - Lx9 LINE L1 -271 7373 7066 3 1143 1283 19 0 0 chr3 73222425 73222580 -86377203 - L1Md_A LINE L1 0 6582 6428 3 1143 294 312 118 0 chr3 73223907 73224000 -86375783 + PB1 SINE Alu 9 112 -15 3 1143 180 111 0 0 chr3 73224001 73224028 -86375755 + (CAGC)n Simple_repeat Simple_repeat 2 28 0 3 1143 538 27 13 26 chr3 73224029 73224106 -86375677 + (TAGA)n Simple_repeat Simple_repeat 2 77 0 3 1143 201 244 0 0 chr3 73224289 73224334 -86375449 + CT-rich Low_complexity Low_complexity 5 49 0 3 1143 467 322 28 28 chr3 73225884 73226060 -86373723 + MLT1E1 LTR MaLR 1 176 -478 3 1143 213 113 0 86 chr3 73226622 73226680 -86373103 + A-rich Low_complexity Low_complexity 2 54 0 3 1143 21 0 0 0 chr3 73226974 73226995 -86372788 + AT_rich Low_complexity Low_complexity 1 21 0 3 1143 348 315 38 135 chr3 73227247 73227669 -86372114 + MER110 LTR ERV1 87 467 -24 3 1143 453 36 0 0 chr3 73227917 73227972 -86371811 + (TA)n Simple_repeat Simple_repeat 1 55 0 3 1143 188 138 33 49 chr3 73228097 73228219 -86371564 + (TATAA)n Simple_repeat Simple_repeat 2 121 0 3 1143 180 228 0 0 chr3 73228346 73228403 -86371380 + (TA)n Simple_repeat Simple_repeat 2 58 0 3 1143 469 300 15 44 chr3 73228490 73228626 -86371157 - ID_B1 SINE B4 -87 137 6 3 1143 575 254 42 0 chr3 73229495 73229637 -86370146 + MTD LTR MaLR 1 148 -271 3 1143 800 319 115 6 chr3 73229981 73230312 -86369471 + MTE2b LTR MaLR 4 370 -9 3 1143 240 111 0 0 chr3 73230312 73230348 -86369435 + (GGA)n Simple_repeat Simple_repeat 1 36 0 3 1143 480 288 112 70 chr3 73230704 73230962 -86368821 + MLT-int LTR MaLR 1428 1696 -39 3 1143 575 350 86 42 chr3 73231103 73231485 -86368298 + MLT1C LTR MaLR 64 462 -5 3 1143 37381 19 2 7 chr3 73232054 73237255 -86362528 + L1Md_A LINE L1 416 5586 -297 3 1143 8712 20 0 0 chr3 73237255 73238251 -86361532 + L1Md_A LINE L1 5587 6582 0 3 1143 225 307 67 0 chr3 73238664 73238739 -86361044 - MLT1B LTR MaLR -29 379 300 3 1143 306 329 62 19 chr3 73238782 73238943 -86360840 - MLT1B LTR MaLR -219 171 4 3 1143 1229 205 62 167 chr3 73239228 73239708 -86360075 + RLTR23 LTR ERV1 1 430 0 3 1143 597 40 0 0 chr3 73239768 73239844 -86359939 + (GA)n Simple_repeat Simple_repeat 1 76 0 3 1143 1976 226 26 63 chr3 73240086 73240592 -86359191 + RLTR25A LTR ERVK 35 521 -582 3 1143 694 171 177 132 chr3 73240518 73240767 -86359016 + ORR1A3-int LTR MaLR 499 758 -1205 3 1143 1112 160 89 61 chr3 73240621 73240837 -86358946 + MT2B LTR ERVL 35 257 -344 3 1143 476 269 67 0 chr3 73240837 73240956 -86358827 + B1_Mur3 SINE Alu 1 127 -22 3 1143 328 337 11 0 chr3 73242096 73242188 -86357595 + PB1D10 SINE Alu 9 101 -16 3 1143 558 0 0 0 chr3 73242710 73242772 -86357011 + (TG)n Simple_repeat Simple_repeat 2 63 0 3 1143 272 309 37 130 chr3 73242972 73243188 -86356595 + B3A SINE B2 1 196 -2 3 1143 7415 70 9 1 chr3 73243390 73244350 -86355433 - L1_Mus2 LINE L1 -1 6565 5598 3 1143 24 0 0 0 chr3 73244427 73244451 -86355332 + AT_rich Low_complexity Low_complexity 1 24 0 3 1143 22 94 0 0 chr3 73244640 73244704 -86355079 + AT_rich Low_complexity Low_complexity 1 64 0 3 1143 479 239 19 78 chr3 73244727 73244881 -86354902 - B1_Mur2 SINE Alu 0 149 5 3 1143 670 78 0 0 chr3 73244901 73245004 -86354779 - MusHAL1 LINE L1 -58 2654 2552 3 1143 468 214 0 0 chr3 73245631 73245743 -86354040 + (TA)n Simple_repeat Simple_repeat 2 113 0 3 1143 1041 116 0 0 chr3 73245852 73245998 -86353785 + B1_Mus2 SINE Alu 2 147 0 3 1143 10819 76 11 3 chr3 73246020 73247561 -86352222 + L1_Mus1 LINE L1 4363 5918 -664 3 1143 3575 124 14 7 chr3 73247561 73248113 -86351670 + L1_Mus1 LINE L1 6012 6567 0 3 1143 21 0 0 0 chr3 73249341 73249362 -86350421 + AT_rich Low_complexity Low_complexity 1 21 0 3 1143 23 78 0 0 chr3 73249429 73249480 -86350303 + AT_rich Low_complexity Low_complexity 1 51 0 3 1143 1180 267 36 46 chr3 73249509 73249921 -86349862 - Lx9 LINE L1 -479 7165 6758 3 1143 259 242 44 66 chr3 73250017 73250154 -86349629 + Lx9 LINE L1 7337 7470 -174 3 1143 294 223 71 50 chr3 73250373 73250472 -86349311 + Lx6 LINE L1 7359 7459 -1 3 1143 3041 108 32 22 chr3 73250541 73251043 -86348740 + L1_Mus3 LINE L1 6130 6636 -2 3 1143 6157 40 0 1 chr3 73251078 73252133 -86347650 - L1Md_F2 LINE L1 -395 6187 5135 3 1143 3152 61 0 21 chr3 73252134 73252555 -86347228 + L1Md_F2 LINE L1 6169 6580 -2 3 1143 431 274 10 23 chr3 73252665 73252786 -86346997 + B1F SINE Alu 1 118 -2 3 1143 225 0 0 0 chr3 73253418 73253443 -86346340 + (CAAAA)n Simple_repeat Simple_repeat 4 28 0 3 1143 37813 54 23 5 chr3 73254426 73260783 -86339000 - L1Md_A LINE L1 -1 6581 104 3 1143 1898 299 24 41 chr3 73260845 73261763 -86338020 - RMER16-int LTR ERVK -437 4969 4068 3 1143 2895 98 19 0 chr3 73261780 73262198 -86337585 - Lx3_Mus LINE L1 -1 7008 6583 3 1143 4585 72 46 2 chr3 73262198 73262828 -86336955 + Lx3_Mus LINE L1 5937 6594 -415 3 1143 558 141 0 21 chr3 73262837 73262931 -86336852 - RMER16-int LTR ERVK -1335 4071 3980 3 1143 1807 279 29 36 chr3 73263167 73263921 -86335862 - RMER16-int LTR ERVK -1427 3979 3231 3 1143 216 321 0 0 chr3 73264662 73264746 -86335037 + T-rich Low_complexity Low_complexity 1 84 0 3 1143 4037 97 0 26 chr3 73265000 73265614 -86334169 - L1_Mur1 LINE L1 -1274 4612 4015 3 1143 679 262 14 129 chr3 73265894 73266104 -86333679 + B3 SINE B2 3 188 -7 3 1143 242 116 0 23 chr3 73266588 73266632 -86333151 + (TA)n Simple_repeat Simple_repeat 1 43 0 3 1143 23 0 0 0 chr3 73266712 73266735 -86333048 + AT_rich Low_complexity Low_complexity 1 23 0 3 142 32064 62 55 2 chr3 73267007 73272689 -86327094 - L1Md_F3 LINE L1 -6 6578 622 3 1144 200 158 39 13 chr3 73273004 73273081 -86326702 + (TAGA)n Simple_repeat Simple_repeat 2 80 0 3 1144 28 0 0 0 chr3 73273484 73273512 -86326271 + AT_rich Low_complexity Low_complexity 1 28 0 3 1144 307 351 84 7 chr3 73274570 73274725 -86325058 - MLT1F2 LTR MaLR -372 188 22 3 1144 284 302 21 0 chr3 73275189 73275285 -86324498 + CT-rich Low_complexity Low_complexity 5 102 0 3 1144 45 45 0 0 chr3 73275385 73275451 -86324332 + AT_rich Low_complexity Low_complexity 1 66 0 3 1144 784 286 10 5 chr3 73275458 73275658 -86324125 - B3 SINE B2 -15 201 1 3 1144 664 312 38 14 chr3 73275993 73276204 -86323579 - B3 SINE B2 0 216 1 3 1144 592 357 65 11 chr3 73276838 73277099 -86322684 + B4 SINE B4 1 275 -17 3 1144 1046 240 43 17 chr3 73277576 73277877 -86321906 - Lx9 LINE L1 -145 7499 7191 3 1144 514 145 27 0 chr3 73278618 73278747 -86321036 - B1_Mus1 SINE Alu -1 146 10 3 1144 297 0 0 0 chr3 73278940 73278973 -86320810 + (TA)n Simple_repeat Simple_repeat 1 33 0 3 1144 503 343 56 26 chr3 73279148 73279453 -86320330 + Lx6 LINE L1 6102 6415 -635 3 1144 239 284 61 95 chr3 73279459 73279607 -86320176 - RMER17C LTR ERVK -78 332 190 3 1144 890 43 9 0 chr3 73279607 73279722 -86320061 + (GAA)n Simple_repeat Simple_repeat 3 118 0 3 1144 606 71 0 0 chr3 73279722 73279805 -86319978 + (GGAA)n Simple_repeat Simple_repeat 1 84 0 3 1144 1337 263 11 11 chr3 73279810 73280190 -86319593 + Lx6 LINE L1 6520 7258 -202 3 1144 26 0 0 0 chr3 73281028 73281054 -86318729 + AT_rich Low_complexity Low_complexity 1 26 0 3 1144 246 301 54 11 chr3 73283537 73283722 -86316061 + RMER17C LTR ERVK 48 240 -170 3 1144 203 158 0 0 chr3 73283722 73283760 -86316023 + CT-rich Low_complexity Low_complexity 1 38 0 3 1144 270 73 0 0 chr3 73283760 73283801 -86315982 + (TCTCTG)n Simple_repeat Simple_repeat 2 42 0 3 1144 22 0 0 0 chr3 73284010 73284032 -86315751 + AT_rich Low_complexity Low_complexity 1 22 0 3 1144 298 322 22 0 chr3 73284590 73284680 -86315103 - ID_B1 SINE B4 -128 96 5 3 1144 1235 165 62 0 chr3 73284902 73285194 -86314589 - Lx2A1 LINE L1 -12 6988 6657 3 1144 2014 96 41 9 chr3 73285197 73285513 -86314270 - Lx2A1 LINE L1 -858 6150 5825 3 1144 318 183 0 0 chr3 73285762 73285833 -86313950 + (TA)n Simple_repeat Simple_repeat 2 72 0 3 1144 23 0 0 0 chr3 73286022 73286045 -86313738 + AT_rich Low_complexity Low_complexity 1 23 0 3 1144 180 0 0 0 chr3 73286164 73286184 -86313599 + (A)n Simple_repeat Simple_repeat 1 20 0 3 1144 1290 112 172 16 chr3 73286909 73287164 -86312619 + Lx2 LINE L1 6703 6997 0 3 1144 717 119 0 0 chr3 73287303 73287412 -86312371 + L1_Mus2 LINE L1 6458 6566 0 3 1144 207 100 0 0 chr3 73287422 73287452 -86312331 + (TAAA)n Simple_repeat Simple_repeat 4 33 0 4 1144 498 369 87 31 chr3 73288213 73288602 -86311181 + MLT1C LTR MaLR 39 449 -18 4 1144 239 167 21 53 chr3 73288761 73288780 -86311003 + (TCTA)n Simple_repeat Simple_repeat 2 19 0 4 1144 390 91 0 0 chr3 73288780 73288835 -86310948 + (TCTG)n Simple_repeat Simple_repeat 2 56 0 4 1144 239 167 21 53 chr3 73288835 73288910 -86310873 + (TCTA)n Simple_repeat Simple_repeat 4 77 0 4 1144 21 0 0 0 chr3 73288918 73288939 -86310844 + AT_rich Low_complexity Low_complexity 1 21 0 4 1144 575 244 82 16 chr3 73289698 73289881 -86309902 + Lx3C LINE L1 6780 6974 -2 4 1144 21 0 0 0 chr3 73290088 73290109 -86309674 + AT_rich Low_complexity Low_complexity 1 21 0 4 1144 4860 231 63 36 chr3 73290257 73290569 -86309214 - Lx5 LINE L1 0 7050 6730 4 1144 3469 15 5 0 chr3 73290569 73290963 -86308820 + MTA_Mm LTR MaLR 1 396 0 4 1144 9082 36 4 1 chr3 73290963 73292058 -86307725 + MTA_Mm-int LTR MaLR 1 1098 0 4 1144 3554 10 2 0 chr3 73292058 73292453 -86307330 + MTA_Mm LTR MaLR 1 396 0 4 1144 4860 231 63 36 chr3 73292453 73293403 -86306380 - Lx5 LINE L1 -321 6729 5753 4 1144 2064 212 12 10 chr3 73293404 73293886 -86305897 - Lx5 LINE L1 -487 5390 4908 4 1144 904 100 40 67 chr3 73294215 73294365 -86305418 + B1_Mus2 SINE Alu 1 146 -1 4 1144 444 19 0 0 chr3 73294369 73294422 -86305361 + (TG)n Simple_repeat Simple_repeat 2 54 0 4 1144 2929 61 26 3 chr3 73294422 73294802 -86304981 + MTA_Mm LTR MaLR 4 392 -4 4 1144 2848 83 0 2 chr3 73294806 73295206 -86304577 + MTA_Mm-int LTR MaLR 1 399 -699 4 1144 685 250 103 34 chr3 73295229 73295445 -86304338 - MT2A LTR ERVL -153 448 94 4 1144 1031 78 0 13 chr3 73295501 73295657 -86304126 + L1Md_F2 LINE L1 6428 6581 -1 4 1144 533 214 35 9 chr3 73295657 73295770 -86304013 - MT2A LTR ERVL -415 118 3 4 1144 2611 296 39 51 chr3 73295772 73296726 -86303057 + Lx7 LINE L1 6617 7555 -141 4 1144 269 51 26 0 chr3 73296726 73296765 -86303018 + (TTA)n Simple_repeat Simple_repeat 3 42 0 4 1144 2611 296 39 51 chr3 73296765 73296870 -86302913 + Lx7 LINE L1 7556 7663 -33 4 1144 593 173 27 48 chr3 73297476 73297664 -86302119 - Lx9 LINE L1 -1 7643 7460 4 1144 283 242 10 39 chr3 73297691 73297794 -86301989 - Lx9 LINE L1 -138 7506 7407 4 1144 1302 264 30 28 chr3 73297793 73298190 -86301593 + Lx9 LINE L1 7025 7422 -222 4 1144 25 31 0 0 chr3 73298281 73298313 -86301470 + AT_rich Low_complexity Low_complexity 1 32 0 4 1144 3246 256 69 81 chr3 73298362 73299595 -86300188 + Lx5 LINE L1 5724 6936 -114 4 1144 246 132 0 0 chr3 73299597 73299650 -86300133 + (T)n Simple_repeat Simple_repeat 1 53 0 4 1144 493 312 114 0 chr3 73299716 73299892 -86299891 + B4A SINE B4 83 278 -14 4 1144 447 245 124 100 chr3 73300160 73300419 -86299364 - LTR40b LTR ERVL -11 451 187 4 1144 204 40 0 0 chr3 73300821 73300846 -86298937 + (CAGA)n Simple_repeat Simple_repeat 2 26 0 4 1144 221 188 0 0 chr3 73301392 73301424 -86298359 - B1F SINE Alu -106 43 12 4 1144 1304 78 11 0 chr3 73301679 73301870 -86297913 + L1Md_F2 LINE L1 6390 6582 0 4 1144 25 83 0 0 chr3 73301933 73301993 -86297790 + AT_rich Low_complexity Low_complexity 1 60 0 4 1144 777 321 94 28 chr3 73302425 73302713 -86297070 + ORR1E LTR MaLR 1 307 -52 4 1144 2775 172 30 28 chr3 73303343 73303871 -86295912 + RLTR25A LTR ERVK 1 529 -574 4 1144 26038 67 3 1 chr3 73303871 73307880 -86291903 - L1Md_A LINE L1 -1286 4597 623 4 1144 195 129 0 0 chr3 73308028 73308059 -86291724 + (T)n Simple_repeat Simple_repeat 1 31 0 4 1144 458 118 12 0 chr3 73308060 73308145 -86291638 - Lx LINE L1 -1 6653 6568 4 1144 299 330 58 50 chr3 73309210 73309331 -86290452 + RSINE1 SINE B4 44 165 0 4 1144 38 22 0 0 chr3 73309331 73309376 -86290407 + AT_rich Low_complexity Low_complexity 1 45 0 4 1144 235 406 23 0 chr3 73309412 73309540 -86290243 + MLT1J LTR MaLR 72 202 -310 4 1144 1116 69 7 0 chr3 73310073 73310218 -86289565 + B1_Mus1 SINE Alu 3 148 0 4 1144 336 102 0 0 chr3 73310218 73310267 -86289516 + (A)n Simple_repeat Simple_repeat 1 49 0 4 1144 3516 13 2 0 chr3 73310370 73310765 -86289018 + MTA_Mm LTR MaLR 1 396 0 4 1144 9425 24 0 1 chr3 73310765 73311864 -86287919 + MTA_Mm-int LTR MaLR 1 1098 0 4 1144 3375 30 2 0 chr3 73311864 73312259 -86287524 + MTA_Mm LTR MaLR 1 396 0 4 1144 678 229 126 49 chr3 73312367 73312586 -86287197 + Lx3C LINE L1 6565 6817 -183 4 1144 207 0 0 0 chr3 73312834 73312857 -86286926 + (A)n Simple_repeat Simple_repeat 1 23 0 4 1144 1063 80 0 0 chr3 73313841 73313978 -86285805 + B1_Mm SINE Alu 1 137 -10 4 1144 387 0 0 0 chr3 73313978 73314021 -86285762 + (CA)n Simple_repeat Simple_repeat 2 44 0 4 1144 807 11 0 0 chr3 73314822 73314914 -86284869 + (TC)n Simple_repeat Simple_repeat 1 92 0 4 1144 811 176 7 47 chr3 73315634 73315783 -86284000 + B1_Mur4 SINE Alu 7 149 -1 4 1144 752 293 254 45 chr3 73315884 73316265 -86283518 - RMER15 LTR ERVL -92 483 23 4 1144 637 362 86 58 chr3 73316784 73317282 -86282501 + MLT1F2 LTR MaLR 49 560 0 4 1144 21 0 0 0 chr3 73317559 73317580 -86282203 + AT_rich Low_complexity Low_complexity 1 21 0 4 1144 235 244 91 68 chr3 73317709 73317841 -86281942 - Charlie5 DNA MER1_type -2484 140 6 4 1144 218 49 68 68 chr3 73317876 73317920 -86281863 + T-rich Low_complexity Low_complexity 2 45 0 4 1144 220 208 0 0 chr3 73319030 73319078 -86280705 + (TTTG)n Simple_repeat Simple_repeat 4 51 0 4 1144 183 42 0 0 chr3 73319570 73319594 -86280189 + (TTTTG)n Simple_repeat Simple_repeat 3 26 0 4 1144 417 216 4 10 chr3 73319987 73320100 -86279683 - L1_Mur3 LINE L1 -660 5464 5318 4 1144 2076 117 110 43 chr3 73320106 73320480 -86279303 - Lx2 LINE L1 0 6997 6599 4 1144 789 167 0 91 chr3 73320556 73320721 -86279062 + B2_Mm2 SINE B2 1 150 -45 4 1144 714 126 0 0 chr3 73320722 73320857 -86278926 + (CA)n Simple_repeat Simple_repeat 2 136 0 4 1144 2888 171 18 9 chr3 73320889 73321454 -86278329 - L1_Mur3 LINE L1 -630 5250 4681 4 1144 2746 235 54 55 chr3 73321454 73322234 -86277549 + Lx7 LINE L1 6725 7503 -193 4 1144 370 273 23 0 chr3 73322421 73322509 -86277274 + ID_B1 SINE B4 135 224 0 4 1144 1083 75 0 33 chr3 73322608 73322759 -86277024 + B1_Mus1 SINE Alu 2 147 -1 4 1144 198 0 0 0 chr3 73323087 73323109 -86276674 + (A)n Simple_repeat Simple_repeat 1 22 0 4 1144 28 0 0 0 chr3 73323523 73323551 -86276232 + AT_rich Low_complexity Low_complexity 1 28 0 4 1144 180 125 0 0 chr3 73324342 73324374 -86275409 + (CATG)n Simple_repeat Simple_repeat 4 35 0 4 1144 189 94 0 0 chr3 73324376 73324408 -86275375 + (TG)n Simple_repeat Simple_repeat 2 33 0 4 1144 229 279 46 46 chr3 73325064 73325173 -86274610 + MER49 LTR ERV1 269 377 -546 4 1144 365 190 58 18 chr3 73325640 73325811 -86273972 + (TA)n Simple_repeat Simple_repeat 2 179 0 4 1144 3390 90 4 0 chr3 73326228 73326683 -86273100 - L1_Mus1 LINE L1 -87 6480 6024 4 1144 1793 135 154 10 chr3 73326682 73327032 -86272751 - Lx4A LINE L1 -207 6851 6452 4 1144 662 282 63 14 chr3 73327036 73327332 -86272451 + Lx3C LINE L1 6639 7048 -10 4 1144 1275 89 0 0 chr3 73327379 73327558 -86272225 + (CA)n Simple_repeat Simple_repeat 2 180 0 4 1144 1113 128 0 0 chr3 73327578 73327758 -86272025 + (CA)n Simple_repeat Simple_repeat 1 180 0 4 1144 1101 114 0 0 chr3 73327770 73328009 -86271774 + (CA)n Simple_repeat Simple_repeat 1 239 0 4 1144 1287 241 29 16 chr3 73328024 73328332 -86271451 - Lx9 LINE L1 -192 7452 7141 4 1144 575 227 39 0 chr3 73328346 73328474 -86271309 + L1_Rod LINE L1 4263 4395 -1452 4 1144 360 345 106 14 chr3 73328500 73328782 -86271001 + L1M5 LINE L1 4358 4665 -1481 4 1144 486 33 0 0 chr3 73329152 73329212 -86270571 + (CA)n Simple_repeat Simple_repeat 2 61 0 4 1144 642 271 105 5 chr3 73329251 73329451 -86270332 - MLT1A0 LTR MaLR -129 236 17 4 1144 256 303 79 0 chr3 73329556 73329645 -86270138 - MTEb LTR MaLR -23 356 261 4 1144 314 256 24 0 chr3 73329669 73329751 -86270032 + MTD LTR MaLR 334 417 -2 4 1144 561 185 0 0 chr3 73330132 73330251 -86269532 + (TCTA)n Simple_repeat Simple_repeat 3 121 0 4 1144 270 0 0 0 chr3 73330251 73330281 -86269502 + (TAGA)n Simple_repeat Simple_repeat 3 32 0 4 1144 221 236 0 35 chr3 73330287 73330344 -86269439 + (TATG)n Simple_repeat Simple_repeat 2 56 0 4 1144 560 216 8 8 chr3 73331622 73331748 -86268035 - RSINE1 SINE B4 -37 128 3 4 1144 36 23 0 0 chr3 73333637 73333680 -86266103 + AT_rich Low_complexity Low_complexity 1 43 0 4 1144 244 45 21 43 chr3 73333755 73333802 -86265981 + (TTTTG)n Simple_repeat Simple_repeat 2 47 0 4 1144 182 156 22 0 chr3 73334270 73334315 -86265468 + T-rich Low_complexity Low_complexity 3 48 0 4 1144 21 57 0 0 chr3 73335132 73335167 -86264616 + AT_rich Low_complexity Low_complexity 1 35 0 4 1144 301 326 35 14 chr3 73335532 73335675 -86264108 - L1M2 LINE L1 -3549 2594 2449 4 1144 1465 231 3 30 chr3 73336003 73336337 -86263446 + RLTR14 LTR ERV1 7 331 -51 4 1144 198 191 0 0 chr3 73337147 73337194 -86262589 + A-rich Low_complexity Low_complexity 4 50 0 4 1144 203 147 0 0 chr3 73337202 73337236 -86262547 + (CTA)n Simple_repeat Simple_repeat 1 34 0 4 1144 228 274 27 0 chr3 73337852 73337925 -86261858 - L1MEc LINE L1 -5788 612 538 4 1144 254 322 105 34 chr3 73338568 73338777 -86261006 - L1MEc LINE L1 -6127 273 50 4 1144 182 319 0 105 chr3 73339295 73339400 -86260383 + L2 LINE L2 697 790 -2629 4 1144 1507 219 162 8 chr3 73340491 73340886 -86258897 - RMER4B LTR ERVK 0 585 130 4 1144 1493 213 82 3 chr3 73340862 73341177 -86258606 + ORR1B1 LTR MaLR 47 386 -8 4 1144 401 286 65 8 chr3 73341227 73341491 -86258292 + L1M2 LINE L1 1968 2204 -4645 4 1144 261 235 0 58 chr3 73341808 73341912 -86257871 - Lx7 LINE L1 -18 7678 7581 4 1144 681 166 12 23 chr3 73341913 73342086 -86257697 + CT-rich Low_complexity Low_complexity 6 176 0 4 1144 399 21 0 0 chr3 73342087 73342135 -86257648 + (CA)n Simple_repeat Simple_repeat 2 49 0 4 1144 239 197 44 29 chr3 73342243 73342311 -86257472 - Lx8 LINE L1 -1552 5921 5853 4 1144 404 291 27 72 chr3 73342342 73342568 -86257215 + Lx8 LINE L1 6597 6820 -653 4 1144 1777 270 55 5 chr3 73342944 73343543 -86256240 - Lx9 LINE L1 0 7644 7016 4 1144 522 98 0 0 chr3 73344003 73344085 -86255698 + (CA)n Simple_repeat Simple_repeat 2 83 0 4 1144 5041 218 76 23 chr3 73344276 73346084 -86253699 + Lx5 LINE L1 5010 6912 -138 5 1144 21 57 0 0 chr3 73346112 73346147 -86253636 + AT_rich Low_complexity Low_complexity 1 35 0 5 1144 31096 86 16 7 chr3 73346491 73351659 -86248124 + L1Md_F2 LINE L1 373 5585 -298 5 1144 7213 80 21 2 chr3 73351660 73352626 -86247157 + L1Md_F2 LINE L1 5587 6570 -12 5 1144 526 316 72 44 chr3 73353094 73353481 -86246302 - HAL1 LINE L1 -801 1706 1309 5 1144 2607 299 84 44 chr3 73353792 73354320 -86245463 - Lx8 LINE L1 0 7473 6917 5 1144 366 23 0 0 chr3 73354320 73354363 -86245420 + (CA)n Simple_repeat Simple_repeat 2 44 0 5 1144 2607 299 84 44 chr3 73354363 73354865 -86244918 - Lx8 LINE L1 -557 6916 6414 5 1144 477 0 0 0 chr3 73354865 73354918 -86244865 + (TG)n Simple_repeat Simple_repeat 2 54 0 5 1144 2607 299 84 44 chr3 73354918 73355059 -86244724 - Lx8 LINE L1 -1060 6413 6255 5 1144 521 287 90 93 chr3 73355068 73355482 -86244301 + L1_Mur3 LINE L1 3908 4346 -1534 5 1144 1364 45 6 0 chr3 73355482 73355658 -86244125 + (GGAA)n Simple_repeat Simple_repeat 2 178 0 5 1144 521 287 90 93 chr3 73355658 73355889 -86243894 + L1_Mur3 LINE L1 4347 4551 -1329 5 1144 25 0 0 0 chr3 73355951 73355976 -86243807 + AT_rich Low_complexity Low_complexity 1 25 0 5 1144 308 379 41 76 chr3 73356844 73357041 -86242742 - B4A SINE B4 -34 190 1 5 1144 29 47 0 0 chr3 73357836 73357879 -86241904 + AT_rich Low_complexity Low_complexity 1 43 0 5 1144 24 32 0 0 chr3 73358649 73358680 -86241103 + AT_rich Low_complexity Low_complexity 1 31 0 5 1144 22 70 0 0 chr3 73358719 73358762 -86241021 + AT_rich Low_complexity Low_complexity 1 43 0 5 1144 276 130 0 0 chr3 73360028 73360074 -86239709 + (T)n Simple_repeat Simple_repeat 1 46 0 5 1144 252 312 28 118 chr3 73360437 73360648 -86239135 + LTR48 LTR ERV1 583 774 -13 5 1144 695 351 56 14 chr3 73361347 73361633 -86238150 - RMER15 LTR ERVL -3 572 275 5 1144 313 277 0 46 chr3 73361749 73361836 -86237947 - B3 SINE B2 0 216 134 5 1144 342 0 0 0 chr3 73361914 73361952 -86237831 + (TTA)n Simple_repeat Simple_repeat 2 39 0 5 1144 412 156 0 38 chr3 73361958 73362038 -86237745 - Lx3B LINE L1 -4 6969 6893 5 1144 961 217 29 5 chr3 73362083 73362287 -86237496 - RMER6C LTR ERVK 0 690 482 5 1144 194 214 12 0 chr3 73362307 73362391 -86237392 + (AACTG)n Simple_repeat Simple_repeat 1 85 0 5 1144 354 164 0 0 chr3 73363095 73363132 -86236651 + A-rich Low_complexity Low_complexity 1 37 0 5 1144 1114 48 0 58 chr3 73363132 73363288 -86236495 + B1_Mus2 SINE Alu 1 147 0 5 1144 354 164 0 0 chr3 73363288 73363317 -86236466 + A-rich Low_complexity Low_complexity 38 66 0 5 1144 4275 17 0 0 chr3 73363489 73363971 -86235812 - LTRIS_Mm LTR ERV1 0 482 1 5 1144 3017 75 5 2 chr3 73364083 73364482 -86235301 + MTB LTR MaLR 1 400 0 5 1144 248 0 31 0 chr3 73365105 73365137 -86234646 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 5 1144 1603 36 0 20 chr3 73365640 73365837 -86233946 - B2_Mm1a SINE B2 0 193 1 5 1144 26 0 0 0 chr3 73366166 73366192 -86233591 + AT_rich Low_complexity Low_complexity 1 26 0 5 1144 303 150 0 0 chr3 73366220 73366280 -86233503 + (TG)n Simple_repeat Simple_repeat 1 60 0 5 1144 271 310 29 29 chr3 73367071 73367174 -86232609 - MLT1A0 LTR MaLR -8 357 255 5 1144 21 36 0 0 chr3 73368032 73368060 -86231723 + AT_rich Low_complexity Low_complexity 1 28 0 5 1144 2176 248 73 47 chr3 73368088 73369086 -86230697 - Lx6 LINE L1 -602 6858 5587 5 1144 226 327 73 26 chr3 73370046 73370197 -86229586 + MLT2F LTR ERVL 457 614 -49 5 1144 651 314 75 33 chr3 73370560 73370922 -86228861 - MTEa LTR MaLR -2 377 1 5 1144 1093 303 44 30 chr3 73371105 73371537 -86228246 + Lx8 LINE L1 6419 6856 -617 5 1144 715 290 45 25 chr3 73372085 73372371 -86227412 - L1M2 LINE L1 -598 5702 5411 5 1144 655 296 11 11 chr3 73372601 73372789 -86226994 + B3A SINE B2 11 198 0 5 1144 44 46 0 0 chr3 73374161 73374226 -86225557 + AT_rich Low_complexity Low_complexity 1 65 0 5 1144 291 326 75 0 chr3 73374546 73374693 -86225090 - Lx9 LINE L1 -170 7474 7317 5 1144 1171 290 77 20 chr3 73374793 73375339 -86224444 + Lx9 LINE L1 5271 5847 0 5 1144 278 142 67 59 chr3 73375381 73375516 -86224267 + (TATAG)n Simple_repeat Simple_repeat 1 136 0 5 1144 330 167 0 0 chr3 73375518 73375578 -86224205 + (CAGAGA)n Simple_repeat Simple_repeat 5 64 0 5 1144 4376 66 12 12 chr3 73375655 73376219 -86223564 - LTRIS2 LTR ERV1 0 564 1 5 1144 283 244 39 54 chr3 73376306 73376436 -86223347 + Lx9 LINE L1 6158 6285 -1359 5 1144 577 256 218 31 chr3 73376469 73376763 -86223020 - RLTR25A LTR ERVK 0 1103 755 5 1144 2527 220 40 117 chr3 73377154 73377974 -86221809 - RLTR25A LTR ERVK -339 764 8 5 1144 1820 226 35 2 chr3 73378014 73378409 -86221374 - MTC LTR MaLR 0 421 14 5 1144 2397 310 33 21 chr3 73378483 73379327 -86220456 + Lx9 LINE L1 6379 7232 -412 5 1144 27 0 0 0 chr3 73379931 73379958 -86219825 + AT_rich Low_complexity Low_complexity 1 27 0 5 1144 611 224 14 120 chr3 73379959 73380167 -86219616 - B3 SINE B2 -9 186 1 5 1144 535 255 74 74 chr3 73380170 73380386 -86219397 - B3 SINE B2 0 216 1 5 1144 582 197 15 29 chr3 73380410 73380546 -86219237 + L1_Mur3 LINE L1 5055 5188 -692 5 1144 5741 220 48 26 chr3 73380550 73382413 -86217370 + Lx5 LINE L1 5084 7001 -49 5 1144 467 358 44 22 chr3 73383419 73383645 -86216138 + B4A SINE B4 1 231 -61 5 1144 617 192 6 64 chr3 73383634 73383649 -86216134 + ID_B1 SINE B4 78 222 0 5 1144 1022 79 0 0 chr3 73383649 73383788 -86215995 + B1_Mus1 SINE Alu 10 148 0 5 1144 213 65 0 0 chr3 73383829 73383860 -86215923 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 5 1144 275 300 56 14 chr3 73384451 73384522 -86215261 - MLT1F1 LTR MaLR -223 346 273 5 1144 297 151 0 0 chr3 73384945 73384998 -86214785 + GA-rich Low_complexity Low_complexity 2 54 0 5 1144 7292 16 1 4 chr3 73385122 73385946 -86213837 - RLTR13B2 LTR ERVK 0 822 1 5 1144 366 23 0 0 chr3 73386414 73386457 -86213326 + (CAAAA)n Simple_repeat Simple_repeat 1 43 0 5 1144 22 70 0 0 chr3 73386968 73387011 -86212772 + AT_rich Low_complexity Low_complexity 1 43 0 5 1144 1243 184 9 0 chr3 73387605 73387828 -86211955 + URR1B DNA MER1_type 1 225 0 5 1144 416 329 105 23 chr3 73388096 73388438 -86211345 - ORR1D2 LTR MaLR 0 370 1 5 1144 1199 49 0 0 chr3 73388830 73388974 -86210809 + B1_Mus2 SINE Alu 3 146 -1 5 1144 183 42 0 0 chr3 73388977 73389001 -86210782 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 5 1144 389 309 101 68 chr3 73389236 73389455 -86210328 - MTEb LTR MaLR -40 339 114 5 1144 363 276 68 8 chr3 73389490 73389607 -86210176 - MTEb LTR MaLR -255 124 1 5 1144 223 107 82 12 chr3 73389729 73389814 -86209969 + (TA)n Simple_repeat Simple_repeat 2 92 0 5 1144 223 189 90 12 chr3 73389845 73390011 -86209772 + (TA)n Simple_repeat Simple_repeat 2 180 0 5 1144 319 133 40 13 chr3 73390434 73390510 -86209273 - Lx4B LINE L1 -830 6228 6151 5 1144 3583 155 7 7 chr3 73391224 73391823 -86207960 + Lx2 LINE L1 6170 6768 -229 5 1144 405 0 0 0 chr3 73391825 73391870 -86207913 + (TG)n Simple_repeat Simple_repeat 1 45 0 5 1144 616 267 120 41 chr3 73391871 73392124 -86207659 - MT2A LTR ERVL -60 524 104 5 1144 210 37 0 0 chr3 73392535 73392562 -86207221 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 5 1144 1250 107 0 11 chr3 73392562 73392741 -86207042 - B2_Mm2 SINE B2 -16 179 3 5 1144 312 326 113 47 chr3 73392934 73393208 -86206575 - HAL1 LINE L1 -2108 399 108 5 1144 2036 57 11 0 chr3 73393263 73393525 -86206258 - L1_Mus1 LINE L1 0 6567 6303 5 1144 535 355 49 11 chr3 73393604 73393869 -86205914 + B4A SINE B4 8 282 -10 5 1144 231 250 73 0 chr3 73394544 73394612 -86205171 + MLT1E3 LTR MaLR 547 619 -5 5 1144 2203 22 11 7 chr3 73395116 73395385 -86204398 + L1Md_F3 LINE L1 6301 6570 -14 5 1144 423 323 18 36 chr3 73395549 73395689 -86204094 + RSINE1 SINE B4 2 140 -25 5 1144 979 86 23 6 chr3 73395689 73395864 -86203919 + (CA)n Simple_repeat Simple_repeat 2 179 0 5 1144 423 323 18 36 chr3 73395864 73395890 -86203893 + RSINE1 SINE B4 141 165 0 5 1144 335 157 39 16 chr3 73395895 73396024 -86203759 + (CA)n Simple_repeat Simple_repeat 1 132 0 5 1144 618 82 0 0 chr3 73397717 73397802 -86201981 + (TCTA)n Simple_repeat Simple_repeat 4 88 0 5 1144 844 100 123 0 chr3 73397822 73397952 -86201831 - B1_Mus2 SINE Alu 0 147 2 5 1144 264 336 98 102 chr3 73398159 73398414 -86201369 - B4A SINE B4 0 292 39 5 1144 27 0 0 0 chr3 73398786 73398813 -86200970 + AT_rich Low_complexity Low_complexity 1 27 0 5 1144 4324 216 107 11 chr3 73399014 73400159 -86199624 - Lx2B LINE L1 -4 6996 5743 5 17 1913 127 47 26 chr3 73400217 73400556 -86199227 - L1_Mur1 LINE L1 -1291 4595 4250 5 1145 1788 204 35 7 chr3 73400630 73401060 -86198723 - L1_Mur1 LINE L1 -2034 3852 3411 5 1145 348 24 0 0 chr3 73401140 73401181 -86198602 + (TCTCTG)n Simple_repeat Simple_repeat 2 42 0 5 1145 306 293 80 39 chr3 73401496 73401654 -86198129 - MLT1-int LTR MaLR -227 1144 1012 5 1145 1977 226 39 5 chr3 73401816 73402230 -86197553 - Lx4B LINE L1 -8 7050 6623 5 1145 420 37 0 0 chr3 73402252 73402306 -86197477 + (TG)n Simple_repeat Simple_repeat 1 54 0 5 1145 251 279 11 34 chr3 73402920 73403009 -86196774 + MTEa LTR MaLR 272 358 -21 5 1145 451 0 17 17 chr3 73403674 73403734 -86196049 + (CAAAAA)n Simple_repeat Simple_repeat 2 61 0 5 1145 240 59 0 0 chr3 73404390 73404424 -86195359 + (TTG)n Simple_repeat Simple_repeat 2 35 0 5 1145 212 175 0 0 chr3 73404552 73404592 -86195191 + A-rich Low_complexity Low_complexity 1 40 0 5 1145 2747 216 45 43 chr3 73404622 73404750 -86195033 + L1_Mur3 LINE L1 5160 5282 -598 5 1145 6192 127 17 18 chr3 73404750 73405737 -86194046 + Lx2 LINE L1 6011 6996 -1 5 1145 2747 216 45 43 chr3 73405737 73406324 -86193459 + L1_Mur3 LINE L1 5283 5876 -4 5 1145 1016 299 25 12 chr3 73406430 73406752 -86193031 + Lx6 LINE L1 7107 7432 -28 5 1145 2797 200 24 13 chr3 73406791 73407339 -86192444 - Lx4A LINE L1 -3 7055 6502 5 1145 198 71 0 0 chr3 73407614 73407642 -86192141 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 5 1145 201 74 0 0 chr3 73407764 73407791 -86191992 + (T)n Simple_repeat Simple_repeat 1 27 0 6 1145 39329 25 0 6 chr3 73407818 73413573 -86186210 - L1Md_A LINE L1 0 6582 872 6 1145 746 39 69 0 chr3 73413572 73413674 -86186109 - L1Md_A LINE L1 -6402 322 214 6 1145 512 346 9 9 chr3 73413992 73414208 -86185575 - ID_B1 SINE B4 -7 217 2 6 1145 784 174 77 12 chr3 73414721 73414890 -86184893 - ORR1D1 LTR MaLR 0 374 195 6 1145 1048 222 66 16 chr3 73414914 73415157 -86184626 - Lx4B LINE L1 -52 7006 6752 6 1145 564 224 88 0 chr3 73415157 73415305 -86184478 - ORR1D1 LTR MaLR -121 249 84 6 1145 8147 45 2 0 chr3 73415975 73417185 -86182598 - L1Md_F2 LINE L1 -12 6570 5359 6 1145 330 26 0 0 chr3 73417759 73417798 -86181985 + (TG)n Simple_repeat Simple_repeat 1 39 0 6 1145 581 322 34 19 chr3 73417892 73418098 -86181685 - B3 SINE B2 0 216 8 6 1145 424 309 104 40 chr3 73419922 73420124 -86179659 - B3 SINE B2 -1 215 1 6 1145 27722 122 42 29 chr3 73420237 73425005 -86174778 + L1_Mus1 LINE L1 570 5403 -480 6 1145 245 51 26 0 chr3 73425005 73425044 -86174739 + (CAAA)n Simple_repeat Simple_repeat 1 40 0 6 1145 27722 81 12 13 chr3 73425044 73426209 -86173574 + L1_Mus1 LINE L1 5404 6565 -2 6 1145 551 346 11 11 chr3 73427110 73427291 -86172492 + B3A SINE B2 2 182 -16 6 1145 191 36 0 35 chr3 73427306 73427335 -86172448 + (TAAAA)n Simple_repeat Simple_repeat 3 30 0 6 1145 313 327 73 0 chr3 73427681 73427791 -86171992 + PB1D7 SINE Alu 1 118 -2 6 1145 235 313 10 10 chr3 73427795 73427895 -86171888 + GA-rich Low_complexity Low_complexity 2 101 0 6 1145 2334 109 48 3 chr3 73428344 73428702 -86171081 + Lx LINE L1 6112 6485 -169 6 1145 1742 165 6 42 chr3 73429463 73429798 -86169985 + ORR1A2 LTR MaLR 1 323 -4 6 1145 396 179 0 0 chr3 73429980 73430058 -86169725 + (TATG)n Simple_repeat Simple_repeat 4 81 0 6 1145 2510 184 120 112 chr3 73430404 73431154 -86168629 - RMER6A LTR ERVK 0 756 1 6 1145 238 191 0 0 chr3 73431457 73431504 -86168279 + U2 snRNA snRNA 1 47 -141 6 1145 184 333 56 24 chr3 73431833 73431959 -86167824 + L2a LINE L2 2410 2539 -880 6 1145 217 379 40 0 chr3 73432400 73432524 -86167259 + L2a LINE L2 3278 3406 -20 6 1145 721 309 9 9 chr3 73432886 73433098 -86166685 - MTD LTR MaLR -199 220 9 6 1145 640 43 0 61 chr3 73433594 73433692 -86166091 - L1_Mus2 LINE L1 -1 6565 6474 6 1145 261 0 0 0 chr3 73434437 73434466 -86165317 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 6 1145 394 233 190 0 chr3 73434720 73434836 -86164947 + B1_Mus1 SINE Alu 5 142 -6 6 1145 180 0 0 0 chr3 73435090 73435110 -86164673 + (TTTTTG)n Simple_repeat Simple_repeat 2 21 0 6 1145 1758 214 66 28 chr3 73435122 73435546 -86164237 - Lx4B LINE L1 -18 7040 6601 6 1145 5891 68 0 0 chr3 73435548 73436341 -86163442 - L1_Mus2 LINE L1 -238 6328 5536 6 1145 1670 91 37 4 chr3 73436341 73436584 -86163199 + L1_Mus2 LINE L1 6315 6565 -1 6 1145 657 47 0 0 chr3 73436589 73436674 -86163109 + (GAAA)n Simple_repeat Simple_repeat 2 86 0 6 1145 1040 196 0 34 chr3 73436719 73436925 -86162858 - Lx4B LINE L1 -451 6607 6409 6 1145 3136 206 22 3 chr3 73436922 73437552 -86162231 + Lx4B LINE L1 5716 6357 -701 6 1145 2020 99 84 43 chr3 73437620 73437967 -86161816 - RLTR10B2 LTR ERVK 0 365 5 6 1145 324 48 0 0 chr3 73437988 73438030 -86161753 - RLTR10B LTR ERVK -250 42 1 6 1145 272 301 62 41 chr3 73438152 73438249 -86161534 - MER67C LTR ERV1 -440 271 173 6 1145 2035 230 141 25 chr3 73438344 73438897 -86160886 + RMER19A LTR ERVK 3 619 -118 6 1145 449 115 336 28 chr3 73438889 73438996 -86160787 - B2_Mm2 SINE B2 -9 186 47 6 1145 554 223 42 35 chr3 73439048 73439062 -86160721 + RMER19A LTR ERVK 593 602 -135 6 1145 1159 130 11 0 chr3 73439062 73439239 -86160544 - B2_Mm1t SINE B2 -14 179 1 6 1145 554 223 42 35 chr3 73439239 73439368 -86160415 + RMER19A LTR ERVK 603 737 0 6 1145 1452 239 55 26 chr3 73439687 73440035 -86159748 - ORR1D2 LTR MaLR -8 362 5 6 1145 631 361 4 0 chr3 73440042 73440286 -86159497 + MERVL_2A-int LTR ERVL 715 959 -4802 6 1145 2466 268 101 40 chr3 73440280 73441318 -86158465 + MERVL_2A-int LTR ERVL 918 1980 -3734 6 1145 568 269 78 33 chr3 73441394 73441748 -86158035 + MERVL_2A-int LTR ERVL 5374 5761 0 6 1145 1812 284 29 8 chr3 73441748 73442262 -86157521 + MT2A LTR ERVL 1 525 -8 6 1145 1138 88 0 0 chr3 73444947 73445095 -86154688 - B1_Mus1 SINE Alu 0 148 1 6 1145 26 64 0 0 chr3 73445677 73445724 -86154059 + AT_rich Low_complexity Low_complexity 1 47 0 6 1145 611 140 7 34 chr3 73446452 73446600 -86153183 - Lx9 LINE L1 0 7644 7501 6 1145 32 0 0 0 chr3 73447139 73447171 -86152612 + AT_rich Low_complexity Low_complexity 1 32 0 6 1145 613 301 12 0 chr3 73447203 73447366 -86152417 - B3A SINE B2 -30 168 4 6 1145 309 384 82 66 chr3 73447802 73447960 -86151823 - MLT1A0 LTR MaLR -56 309 144 6 1145 243 0 0 0 chr3 73447960 73447987 -86151796 + (TTTTA)n Simple_repeat Simple_repeat 2 28 0 6 1145 309 384 82 66 chr3 73447987 73448132 -86151651 - MLT1A0 LTR MaLR -222 143 1 6 1145 24 53 0 0 chr3 73448427 73448465 -86151318 + AT_rich Low_complexity Low_complexity 1 38 0 6 1145 332 264 11 11 chr3 73449008 73449096 -86150687 - B4 SINE B4 -204 88 1 6 1145 2090 31 0 11 chr3 73449765 73450029 -86149754 - L1Md_F3 LINE L1 -1 6583 6323 6 1145 423 0 0 0 chr3 73450225 73450272 -86149511 + (TG)n Simple_repeat Simple_repeat 1 47 0 6 1145 349 162 59 0 chr3 73450364 73450432 -86149351 - HAL1-3A_ME LINE L1 -812 2046 1975 6 1145 585 42 0 0 chr3 73450432 73450504 -86149279 + (TATATG)n Simple_repeat Simple_repeat 3 74 0 6 1145 228 329 80 99 chr3 73450504 73450666 -86149117 - B4 SINE B4 -77 215 57 6 1145 24 32 0 0 chr3 73451661 73451692 -86148091 + AT_rich Low_complexity Low_complexity 1 31 0 6 1145 21 0 0 0 chr3 73451892 73451913 -86147870 + AT_rich Low_complexity Low_complexity 1 21 0 6 1145 558 295 79 23 chr3 73452102 73452317 -86147466 - B4A SINE B4 -65 227 1 6 1145 257 305 35 32 chr3 73452323 73452462 -86147321 - Lx7 LINE L1 -5 7691 7569 6 1145 198 0 0 0 chr3 73452865 73452887 -86146896 + (TA)n Simple_repeat Simple_repeat 2 23 0 6 1145 495 370 54 8 chr3 73455567 73455807 -86143976 + B4A SINE B4 3 253 -39 6 1145 498 46 0 0 chr3 73455815 73455880 -86143903 + (CA)n Simple_repeat Simple_repeat 1 65 0 6 1145 297 0 0 0 chr3 73456001 73456034 -86143749 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 6 1145 20072 169 31 18 chr3 73456254 73458071 -86141712 + Lx2 LINE L1 554 2391 -3492 6 1145 198 0 0 0 chr3 73458071 73458093 -86141690 + (CAAA)n Simple_repeat Simple_repeat 3 24 0 6 1145 20072 186 36 28 chr3 73458093 73461934 -86137849 + Lx2 LINE L1 2392 6276 -721 6 1145 442 227 25 49 chr3 73461923 73462085 -86137698 + Lx2 LINE L1 6840 6997 0 6 1145 1053 50 50 0 chr3 73462619 73462758 -86137025 - B1_Mm SINE Alu 0 147 2 6 1145 266 298 92 0 chr3 73463121 73463252 -86136531 + L1MA5 LINE L1 6127 6269 -31 6 1145 21 0 0 0 chr3 73463376 73463397 -86136386 + AT_rich Low_complexity Low_complexity 1 21 0 6 1145 2666 74 26 108 chr3 73463692 73464145 -86135638 - L1_Mus2 LINE L1 0 6566 6151 6 1145 488 368 59 17 chr3 73464227 73464465 -86135318 - MLT1A0 LTR MaLR -4 361 114 6 1145 21 107 0 0 chr3 73464622 73464706 -86135077 + AT_rich Low_complexity Low_complexity 1 84 0 6 1145 243 222 0 0 chr3 73464890 73464944 -86134839 + L1VL1 LINE L1 29 82 -6340 6 1145 230 358 9 9 chr3 73465067 73465177 -86134606 - RSINE1 SINE B4 -47 118 9 6 1145 192 111 0 0 chr3 73465630 73465666 -86134117 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 6 1145 30 0 0 0 chr3 73465766 73465796 -86133987 + AT_rich Low_complexity Low_complexity 1 30 0 6 1145 2657 112 45 0 chr3 73465797 73466218 -86133565 + Lx LINE L1 6208 6647 -7 6 1145 428 386 21 0 chr3 73466225 73466365 -86133418 + RSINE1 SINE B4 2 144 -21 6 1145 333 0 0 0 chr3 73466376 73466413 -86133370 + (CA)n Simple_repeat Simple_repeat 2 38 0 6 1145 21 0 0 0 chr3 73467060 73467081 -86132702 + AT_rich Low_complexity Low_complexity 1 21 0 6 1145 351 317 95 24 chr3 73467673 73467841 -86131942 - HAL1-3A_ME LINE L1 -402 2456 2277 6 1145 342 0 0 0 chr3 73468405 73468443 -86131340 + (TC)n Simple_repeat Simple_repeat 1 38 0 6 1145 316 317 163 21 chr3 73468443 73468633 -86131150 - HAL1-3A_ME LINE L1 -658 2200 1984 6 1145 387 0 0 0 chr3 73468804 73468847 -86130936 + (CA)n Simple_repeat Simple_repeat 2 44 0 6 1145 229 151 38 0 chr3 73468871 73468924 -86130859 + GA-rich Low_complexity Low_complexity 1 55 0 6 1145 1027 119 11 0 chr3 73468925 73469101 -86130682 + (GAAA)n Simple_repeat Simple_repeat 3 180 0 6 1145 518 321 8 0 chr3 73469286 73469420 -86130363 + RSINE1 SINE B4 2 136 -29 6 1145 24 77 0 0 chr3 73469428 73469480 -86130303 + AT_rich Low_complexity Low_complexity 1 52 0 6 1145 554 202 30 150 chr3 73469668 73469982 -86129801 - Lx9 LINE L1 0 7644 7405 6 1145 474 332 20 49 chr3 73470048 73470295 -86129488 + MER57D LTR ERV1 155 394 -17 6 1145 225 362 88 41 chr3 73470314 73470461 -86129322 - L2 LINE L2 -659 2760 2607 6 1145 389 311 5 86 chr3 73470858 73471055 -86128728 - B3A SINE B2 -16 182 2 6 1145 30 59 0 0 chr3 73471106 73471157 -86128626 + AT_rich Low_complexity Low_complexity 1 51 0 6 1145 241 246 0 0 chr3 73471429 73471498 -86128285 + T-rich Low_complexity Low_complexity 1 69 0 6 1145 183 100 0 0 chr3 73471507 73471537 -86128246 + (TG)n Simple_repeat Simple_repeat 2 31 0 6 1145 380 359 0 0 chr3 73471542 73471659 -86128124 - RSINE1 SINE B4 -46 119 3 6 1145 186 258 0 0 chr3 73472012 73472074 -86127709 + (CGTG)n Simple_repeat Simple_repeat 1 62 0 6 1145 573 269 34 6 chr3 73472078 73472254 -86127529 - B3A SINE B2 -16 182 2 6 1145 513 312 52 92 chr3 73472351 73472676 -86127107 + RLTR25B LTR ERVK 1 312 -716 6 1145 2401 73 12 0 chr3 73472853 73473183 -86126600 + L1Md_F2 LINE L1 6249 6582 0 6 1145 300 317 67 62 chr3 73473757 73473935 -86125848 + RLTR25B LTR ERVK 850 1028 0 6 1145 405 0 0 0 chr3 73474239 73474284 -86125499 + (TG)n Simple_repeat Simple_repeat 1 45 0 6 1145 374 0 22 0 chr3 73474283 73474329 -86125454 + (GA)n Simple_repeat Simple_repeat 1 47 0 6 1145 474 302 207 39 chr3 73474343 73474522 -86125261 - ID_B1 SINE B4 0 292 80 6 1145 396 82 0 0 chr3 73474664 73474725 -86125058 + (TG)n Simple_repeat Simple_repeat 2 62 0 6 1145 361 279 71 18 chr3 73474745 73474858 -86124925 - B3A SINE B2 -55 143 25 6 1145 333 93 0 0 chr3 73474889 73474943 -86124840 + (TC)n Simple_repeat Simple_repeat 1 54 0 7 1145 474 18 0 0 chr3 73476312 73476367 -86123416 + (TG)n Simple_repeat Simple_repeat 1 55 0 7 1145 272 336 35 28 chr3 73476996 73477140 -86122643 + Lx7 LINE L1 7537 7681 -15 7 1145 206 132 0 73 chr3 73477147 73477188 -86122595 + polypurine Low_complexity Low_complexity 4 41 0 7 1145 233 29 29 0 chr3 73478419 73478453 -86121330 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 7 1145 21 36 0 0 chr3 73478493 73478521 -86121262 + AT_rich Low_complexity Low_complexity 1 28 0 7 1145 1039 66 0 0 chr3 73478558 73478695 -86121088 - B1_Mus1 SINE Alu 0 148 12 7 1145 467 221 34 81 chr3 73478585 73478733 -86121050 - MT2B LTR ERVL -323 278 138 7 1145 832 53 53 18 chr3 73479890 73480061 -86119722 + (TCTA)n Simple_repeat Simple_repeat 1 177 0 7 1145 3128 167 46 70 chr3 73480615 73480790 -86118993 + Lx5 LINE L1 5167 5346 -531 7 1145 5691 108 20 5 chr3 73480790 73481657 -86118126 + Lx3A LINE L1 6102 6981 0 7 1145 3128 173 74 50 chr3 73481657 73482460 -86117323 + Lx5 LINE L1 5347 6179 -871 7 1145 288 0 0 0 chr3 73482997 73483029 -86116754 + (TTTA)n Simple_repeat Simple_repeat 4 35 0 7 1145 246 303 91 76 chr3 73483503 73483635 -86116148 - MLT1A1 LTR MaLR -4 404 271 7 1145 221 351 53 11 chr3 73484906 73485001 -86114782 + B4 SINE B4 2 100 -192 7 1145 352 237 8 50 chr3 73484983 73485103 -86114680 - Tigger7 DNA MER2_type -133 2358 2244 7 1145 7558 223 53 20 chr3 73485786 73488133 -86111650 + Lx6 LINE L1 3960 6391 -1069 7 1145 1030 241 32 29 chr3 73488141 73488419 -86111364 + Lx6 LINE L1 6692 6970 -490 7 1145 1044 146 0 0 chr3 73488427 73488591 -86111192 - L1_Mm LINE L1 -643 5240 5077 7 1145 2942 74 2 2 chr3 73488591 73488986 -86110797 + L1_Mus1 LINE L1 6172 6566 -1 7 1145 843 227 25 69 chr3 73488988 73489283 -86110500 + Lx6 LINE L1 6977 7489 -207 7 1145 804 283 62 17 chr3 73489308 73489596 -86110187 + RLTR15 LTR ERVK 1 301 -58 7 1145 590 0 14 0 chr3 73489670 73489740 -86110043 + (TA)n Simple_repeat Simple_repeat 1 71 0 7 1145 247 347 16 24 chr3 73489805 73489929 -86109854 + Lx7 LINE L1 7197 7319 -377 7 1145 21 36 0 0 chr3 73492168 73492196 -86107587 + AT_rich Low_complexity Low_complexity 1 28 0 7 1145 327 25 0 0 chr3 73492327 73492367 -86107416 + (TG)n Simple_repeat Simple_repeat 2 41 0 7 1145 1469 220 39 39 chr3 73492466 73492826 -86106957 + ORR1D1 LTR MaLR 1 360 -14 7 1145 449 300 57 9 chr3 73492961 73493157 -86106626 - MTEa LTR MaLR -162 217 3 7 1145 341 252 86 0 chr3 73493772 73493911 -86105872 + Lx9 LINE L1 7494 7644 0 7 1145 308 228 33 50 chr3 73494384 73494564 -86105219 + (TTATA)n Simple_repeat Simple_repeat 4 180 0 7 1145 2062 142 14 8 chr3 73494769 73495138 -86104645 + Lx LINE L1 6277 6647 -7 7 1145 24 0 0 0 chr3 73495377 73495401 -86104382 + AT_rich Low_complexity Low_complexity 1 24 0 7 1145 21 71 0 0 chr3 73495798 73495840 -86103943 + AT_rich Low_complexity Low_complexity 1 42 0 7 1145 246 273 59 29 chr3 73495895 73495997 -86103786 - B3 SINE B2 0 216 112 7 1145 541 321 42 0 chr3 73496357 73496525 -86103258 + B3 SINE B2 17 191 -25 7 1145 10254 180 10 25 chr3 73496617 73498088 -86101695 + Lx2B LINE L1 3844 5281 -596 7 1145 3045 122 94 0 chr3 73498088 73498597 -86101186 + L1_Mus3 LINE L1 6070 6626 -12 7 1145 10254 160 30 7 chr3 73498597 73500000 -86099783 + Lx2B LINE L1 5282 6728 -272 7 1145 1348 184 22 15 chr3 73500000 73500270 -86099513 + Lx2B LINE L1 6729 7000 0 1 1145 570 294 62 19 chr3 73500261 73500518 -86099265 + Lx9 LINE L1 6185 6452 -1192 2 1145 624 321 31 0 chr3 73502289 73502448 -86097335 + RSINE1 SINE B4 2 165 0 3 1145 476 304 74 37 chr3 73502968 73503183 -86096600 - Tigger5 DNA MER2_type -2164 242 20 4 1145 3040 121 14 28 chr3 73503310 73503805 -86095978 + L1_Mus3 LINE L1 6147 6634 -4 5 1145 857 100 0 8 chr3 73503812 73503943 -86095840 + (GAAA)n Simple_repeat Simple_repeat 2 131 0 6 1145 429 54 0 0 chr3 73506559 73506615 -86093168 + (TG)n Simple_repeat Simple_repeat 2 57 0 7 1145 594 306 26 47 chr3 73508061 73508294 -86091489 + B4A SINE B4 50 277 -15 8 1145 225 303 0 0 chr3 73508312 73508378 -86091405 + (CA)n Simple_repeat Simple_repeat 1 66 0 9 1145 230 0 33 0 chr3 73508891 73508921 -86090862 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1 1145 1121 43 0 7 chr3 73508921 73509060 -86090723 - B1_Mus2 SINE Alu -9 138 1 1 1145 24 0 0 0 chr3 73509141 73509165 -86090618 + AT_rich Low_complexity Low_complexity 1 24 0 1 1145 31 58 0 0 chr3 73509463 73509515 -86090268 + AT_rich Low_complexity Low_complexity 1 52 0 1 1145 21 36 0 0 chr3 73511119 73511147 -86088636 + AT_rich Low_complexity Low_complexity 1 28 0 1 1145 279 54 0 0 chr3 73511734 73511771 -86088012 + (CATA)n Simple_repeat Simple_repeat 2 38 0 1 1145 209 57 29 0 chr3 73512412 73512447 -86087336 + (TTTTG)n Simple_repeat Simple_repeat 2 37 0 1 1145 222 214 0 0 chr3 73512930 73513014 -86086769 + A-rich Low_complexity Low_complexity 1 84 0 1 1145 266 277 15 0 chr3 73514330 73514395 -86085388 + CT-rich Low_complexity Low_complexity 1 66 0 1 1145 1363 232 47 12 chr3 73514773 73515092 -86084691 + ORR1B2 LTR MaLR 1 330 -37 1 1145 468 0 0 0 chr3 73515313 73515365 -86084418 + (TA)n Simple_repeat Simple_repeat 2 53 0 2 1145 720 81 0 0 chr3 73515365 73515464 -86084319 - L1_Mus2 LINE L1 -433 6133 6035 2 1145 2928 73 3 0 chr3 73515465 73515849 -86083934 + L1_Mus2 LINE L1 6181 6565 -1 2 1145 201 162 0 0 chr3 73515859 73515896 -86083887 + A-rich Low_complexity Low_complexity 1 37 0 2 1145 399 192 27 27 chr3 73515907 73516057 -86083726 + RMER17C LTR ERVK 123 272 -138 2 1145 183 42 0 0 chr3 73516370 73516394 -86083389 + (CAGA)n Simple_repeat Simple_repeat 1 24 0 2 1145 372 22 0 0 chr3 73516394 73516438 -86083345 + (CA)n Simple_repeat Simple_repeat 2 46 0 2 1145 1465 99 33 0 chr3 73516557 73516769 -86083014 - ORR1A2 LTR MaLR -8 319 101 2 1145 652 265 225 19 chr3 73516767 73517081 -86082702 - RMER20B LTR ERVK -185 442 64 2 1145 198 0 0 0 chr3 73517195 73517217 -86082566 + (TG)n Simple_repeat Simple_repeat 1 22 0 2 1145 587 14 14 0 chr3 73517217 73517288 -86082495 + (GA)n Simple_repeat Simple_repeat 1 73 0 2 1145 609 14 0 0 chr3 73517567 73517637 -86082146 + (CA)n Simple_repeat Simple_repeat 1 70 0 3 1145 706 259 31 31 chr3 73517955 73518089 -86081694 - MTC LTR MaLR -8 413 281 3 1145 315 0 0 0 chr3 73518089 73518124 -86081659 + (TC)n Simple_repeat Simple_repeat 2 36 0 3 1145 706 259 31 31 chr3 73518124 73518184 -86081599 - MTC LTR MaLR -141 280 220 3 1145 1534 192 52 3 chr3 73518159 73518486 -86081297 - MTC LTR MaLR -73 346 1 3 1145 355 270 53 18 chr3 73518602 73518715 -86081068 + ID_B1 SINE B4 108 224 0 3 1145 21 0 0 0 chr3 73519088 73519109 -86080674 + AT_rich Low_complexity Low_complexity 1 21 0 3 1145 464 320 79 0 chr3 73519154 73519357 -86080426 - MER2 DNA MER2_type -42 303 85 3 1145 204 111 0 0 chr3 73519415 73519451 -86080332 + (TG)n Simple_repeat Simple_repeat 2 37 0 3 1145 24 53 0 0 chr3 73520179 73520217 -86079566 + AT_rich Low_complexity Low_complexity 1 38 0 3 1145 378 42 0 0 chr3 73520300 73520348 -86079435 + (CA)n Simple_repeat Simple_repeat 2 49 0 3 1145 330 292 8 74 chr3 73522002 73522124 -86077659 - B4A SINE B4 -8 284 171 3 1145 563 308 105 73 chr3 73522475 73522961 -86076822 + MLT2B2 LTR ERVL 1 480 -40 4 1145 283 253 13 0 chr3 73522961 73523040 -86076743 + (TATATG)n Simple_repeat Simple_repeat 2 81 0 4 1145 25 0 0 0 chr3 73523152 73523177 -86076606 + AT_rich Low_complexity Low_complexity 1 25 0 4 1145 24 0 0 0 chr3 73523426 73523450 -86076333 + AT_rich Low_complexity Low_complexity 1 24 0 4 1145 222 259 0 0 chr3 73523560 73523618 -86076165 + (CAGA)n Simple_repeat Simple_repeat 4 61 0 4 1145 970 132 0 0 chr3 73523911 73524047 -86075736 + B1_Mus1 SINE Alu 1 136 -12 4 1145 317 22 44 0 chr3 73524048 73524093 -86075690 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 4 1145 367 282 90 51 chr3 73524348 73524501 -86075282 - B4 SINE B4 -143 149 1 4 1145 246 176 0 0 chr3 73524544 73524595 -86075188 + A-rich Low_complexity Low_complexity 1 51 0 4 1145 230 120 31 52 chr3 73524584 73524681 -86075102 + (CAAA)n Simple_repeat Simple_repeat 2 96 0 4 1145 243 346 0 69 chr3 73524705 73524781 -86075002 + ID4_ SINE ID 3 73 -10 5 1145 537 44 0 0 chr3 73524781 73524849 -86074934 + (CA)n Simple_repeat Simple_repeat 2 69 0 5 1145 288 53 0 0 chr3 73524864 73524902 -86074881 + (CAGA)n Simple_repeat Simple_repeat 2 39 0 5 1145 746 282 143 13 chr3 73526100 73526477 -86073306 + L1_Mur2 LINE L1 4521 4946 -931 5 1145 1084 222 199 7 chr3 73526488 73527070 -86072713 + Lx9 LINE L1 6950 7643 -1 5 1145 540 237 100 44 chr3 73527082 73527317 -86072466 + L1_Mur2 LINE L1 4946 5232 -914 5 1145 570 203 19 38 chr3 73527348 73527367 -86072416 + ID_B1 SINE B4 69 224 0 5 1145 1040 43 14 7 chr3 73527367 73527507 -86072276 + B1_Mus1 SINE Alu 7 147 -1 5 1145 243 122 0 0 chr3 73527507 73527556 -86072227 + (CAAA)n Simple_repeat Simple_repeat 1 49 0 5 1145 252 337 99 0 chr3 73527599 73527700 -86072083 + Lx9 LINE L1 7065 7175 -469 5 1145 422 206 33 0 chr3 73527901 73527993 -86071790 + RMER3D-int LTR ERVK 2747 2841 -1 5 1145 2340 232 39 37 chr3 73527996 73528607 -86071176 + RLTR17 LTR ERVK 14 596 -96 5 1145 529 286 47 7 chr3 73528883 73529031 -86070752 + Lx8 LINE L1 6465 6618 -855 6 1145 2032 335 95 39 chr3 73529011 73530342 -86069441 + Lx8 LINE L1 6024 7428 -45 6 1145 314 284 21 10 chr3 73530354 73530450 -86069333 + L1M2 LINE L1 3030 3126 -3017 6 1146 3457 118 7 15 chr3 73531778 73532321 -86067462 - Lx LINE L1 -7 6647 6109 6 1146 1032 81 81 0 chr3 73532321 73532469 -86067314 + Lx LINE L1 5836 5995 -659 6 1146 2200 261 69 61 chr3 73532506 73533293 -86066490 + RMER1C Other Other 550 1342 0 6 1146 378 0 0 0 chr3 73536352 73536394 -86063389 + (TC)n Simple_repeat Simple_repeat 2 43 0 6 1146 243 0 0 0 chr3 73536394 73536420 -86063363 + (TG)n Simple_repeat Simple_repeat 2 28 0 6 1146 2839 23 54 3 chr3 73537105 73537454 -86062329 + IAPLTR1_Mm LTR ERVK 1 367 0 6 1146 8057 81 68 49 chr3 73537454 73538736 -86061047 + IAPEz-int LTR ERVK 8 1313 -5168 6 1146 28787 21 1 2 chr3 73538734 73542011 -86057772 + IAPEz-int LTR ERVK 3209 6481 0 6 1146 2839 23 54 3 chr3 73542011 73542360 -86057423 + IAPLTR1_Mm LTR ERVK 1 367 0 6 1146 261 0 0 0 chr3 73543637 73543666 -86056117 + (T)n Simple_repeat Simple_repeat 1 29 0 6 1146 26 50 0 0 chr3 73543697 73543737 -86056046 + AT_rich Low_complexity Low_complexity 1 40 0 6 1146 328 336 97 16 chr3 73543782 73543861 -86055922 + B4 SINE B4 136 214 -78 6 1146 276 53 0 0 chr3 73543861 73543899 -86055884 + (CAAAA)n Simple_repeat Simple_repeat 3 40 0 7 1146 328 336 97 16 chr3 73543899 73543943 -86055840 + B4 SINE B4 215 269 -23 6 1146 1135 55 0 20 chr3 73544272 73544421 -86055362 - B1_Mus2 SINE Alu 0 147 2 7 1146 1337 208 78 59 chr3 73544612 73544970 -86054813 - ORR1C2 LTR MaLR -15 369 5 7 1146 252 100 0 0 chr3 73545023 73545063 -86054720 + (TG)n Simple_repeat Simple_repeat 2 41 0 7 1146 316 231 0 19 chr3 73545852 73545958 -86053825 + (TA)n Simple_repeat Simple_repeat 1 104 0 7 1146 228 290 120 68 chr3 73546736 73546869 -86052914 + B4A SINE B4 3 142 -150 7 1146 498 75 0 0 chr3 73546977 73547044 -86052739 + (CA)n Simple_repeat Simple_repeat 2 68 0 7 1146 446 0 19 0 chr3 73547209 73547263 -86052520 + (TG)n Simple_repeat Simple_repeat 2 56 0 7 1146 252 77 0 0 chr3 73547310 73547349 -86052434 + (TC)n Simple_repeat Simple_repeat 2 40 0 7 1146 1800 97 22 4 chr3 73547361 73547630 -86052153 - Lx LINE L1 -5 6649 6376 7 1146 470 335 54 67 chr3 73547631 73547945 -86051838 - MLT2D LTR ERVL -84 330 21 8 1146 266 98 0 19 chr3 73548100 73548152 -86051631 + (CAAA)n Simple_repeat Simple_repeat 3 53 0 8 1146 227 256 11 0 chr3 73548572 73548662 -86051121 + (TA)n Simple_repeat Simple_repeat 1 91 0 8 1146 480 175 0 0 chr3 73548729 73548826 -86050957 + T-rich Low_complexity Low_complexity 1 97 0 8 1146 627 274 37 16 chr3 73548827 73549016 -86050767 - RMER5 LTR ERV1 -37 497 305 8 1146 235 224 28 69 chr3 73549039 73549111 -86050672 - RMER5 LTR ERV1 -456 78 10 8 1146 378 0 0 0 chr3 73549139 73549181 -86050602 + (TA)n Simple_repeat Simple_repeat 1 42 0 8 1146 243 0 0 0 chr3 73549181 73549207 -86050576 + (CA)n Simple_repeat Simple_repeat 2 28 0 8 1146 415 248 19 9 chr3 73549334 73549440 -86050343 - PB1D10 SINE Alu -1 116 10 8 1146 22 0 0 0 chr3 73549677 73549699 -86050084 + AT_rich Low_complexity Low_complexity 1 22 0 8 1146 1757 226 9 45 chr3 73549797 73550219 -86049564 - Lx2B LINE L1 -4 6996 6590 8 1146 1124 202 40 4 chr3 73550232 73550485 -86049298 - Lx2B LINE L1 -687 6313 6052 8 1146 324 294 27 93 chr3 73550939 73551089 -86048694 + B4A SINE B4 3 142 -150 9 1146 288 359 64 61 chr3 73551125 73551389 -86048394 - MLT1E1A LTR MaLR -73 607 343 9 1146 276 100 0 0 chr3 73551812 73551852 -86047931 + (T)n Simple_repeat Simple_repeat 1 40 0 9 1146 1579 153 93 18 chr3 73552466 73552798 -86046985 - RLTR15 LTR ERVK 0 359 3 9 1146 446 238 204 45 chr3 73552950 73553126 -86046657 + B3 SINE B2 1 204 -12 9 1146 415 314 117 83 chr3 73553337 73553601 -86046182 + B4A SINE B4 3 275 -17 9 1146 418 320 45 153 chr3 73553734 73553872 -86045911 + MLT1E2 LTR MaLR 298 418 -209 9 1146 459 0 0 0 chr3 73553872 73553923 -86045860 + (TATG)n Simple_repeat Simple_repeat 2 52 0 9 1146 2448 127 5 27 chr3 73553927 73554333 -86045450 - Lx3A LINE L1 -10 6971 6575 9 1146 418 320 45 153 chr3 73554333 73554503 -86045280 + MLT1E2 LTR MaLR 419 575 -52 9 1146 487 326 20 0 chr3 73555354 73555501 -86044282 - RSINE1 SINE B4 -2 163 14 9 1146 504 111 0 0 chr3 73556612 73556702 -86043081 + (CA)n Simple_repeat Simple_repeat 2 91 0 1 1146 306 0 0 0 chr3 73557628 73557662 -86042121 + (CAAAA)n Simple_repeat Simple_repeat 3 36 0 1 1146 1092 85 0 0 chr3 73557780 73557921 -86041862 + B1_Mm SINE Alu 1 141 -6 1 1146 27 0 0 0 chr3 73557923 73557950 -86041833 + AT_rich Low_complexity Low_complexity 1 27 0 1 1146 2580 199 24 86 chr3 73558056 73558338 -86041445 - RMER6D LTR ERVK -4 716 458 1 1146 420 37 0 0 chr3 73558338 73558392 -86041391 + (CA)n Simple_repeat Simple_repeat 2 55 0 1 1146 2580 199 24 86 chr3 73558392 73558873 -86040910 - RMER6D LTR ERVK -263 457 1 1 1146 29 0 0 0 chr3 73559397 73559426 -86040357 + AT_rich Low_complexity Low_complexity 1 29 0 1 1146 22 56 0 0 chr3 73559478 73559514 -86040269 + AT_rich Low_complexity Low_complexity 1 36 0 1 1146 21 0 0 0 chr3 73560834 73560855 -86038928 + AT_rich Low_complexity Low_complexity 1 21 0 1 1146 4038 48 6 4 chr3 73561780 73562283 -86037500 + L1Md_F2 LINE L1 6078 6581 -1 1 1146 765 83 12 0 chr3 73562286 73562410 -86037373 + B1_Mus2 SINE Alu 23 149 0 1 1146 235 0 28 28 chr3 73562410 73562446 -86037337 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 1 1146 303 85 0 0 chr3 73562458 73562505 -86037278 + (CAAAAA)n Simple_repeat Simple_repeat 2 48 0 1 1146 5636 222 48 6 chr3 73562600 73563843 -86035940 - Lx5 LINE L1 -7 7043 5749 1 1146 2710 177 29 19 chr3 73563853 73564372 -86035411 - Lx2B LINE L1 -5 6995 6472 1 1146 8289 155 37 0 chr3 73564372 73566331 -86033452 + Lx2 LINE L1 4969 6997 0 1 1146 261 156 0 0 chr3 73566337 73566382 -86033401 - B3 SINE B2 -171 45 1 1 1146 417 237 17 21 chr3 73568317 73568445 -86031338 - MLT1D LTR MaLR -3 621 413 1 1146 204 125 0 0 chr3 73568456 73568488 -86031295 + (T)n Simple_repeat Simple_repeat 1 32 0 1 1146 6933 32 0 0 chr3 73568502 73569321 -86030462 - L1Md_A LINE L1 0 6582 5764 1 1146 1606 16 0 0 chr3 73569321 73569505 -86030278 + L1Md_A LINE L1 5605 5788 -95 1 1146 1311 238 71 3 chr3 73569691 73569986 -86029797 + MTC LTR MaLR 1 315 -106 1 1146 33 25 0 0 chr3 73570418 73570458 -86029325 + AT_rich Low_complexity Low_complexity 1 40 0 1 1146 203 141 78 0 chr3 73571403 73571467 -86028316 + (TA)n Simple_repeat Simple_repeat 1 69 0 1 1146 1042 140 50 6 chr3 73571963 73572143 -86027640 + B2_Mm2 SINE B2 4 191 -4 1 1146 511 323 81 19 chr3 73573254 73573513 -86026270 + Lx7 LINE L1 6783 7057 -639 1 1146 286 272 87 0 chr3 73573577 73573669 -86026114 + Lx6 LINE L1 6637 6736 -724 1 1146 648 335 82 3 chr3 73573654 73573971 -86025812 + Lx7 LINE L1 7045 7386 -310 1 1146 22 0 0 0 chr3 73574889 73574911 -86024872 + AT_rich Low_complexity Low_complexity 1 22 0 1 1146 180 0 0 0 chr3 73575989 73576009 -86023774 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1 1146 236 291 0 11 chr3 73576096 73576143 -86023640 + T-rich Low_complexity Low_complexity 42 88 0 1 1146 2117 189 7 11 chr3 73576143 73576583 -86023200 - Lx LINE L1 0 6654 6217 1 1146 236 291 0 11 chr3 73576583 73576622 -86023161 + T-rich Low_complexity Low_complexity 4 41 0 1 1146 1174 245 6 77 chr3 73576832 73576978 -86022805 + Lx5 LINE L1 6751 6892 -158 1 1146 1916 91 181 6 chr3 73576978 73577310 -86022473 - RLTR10 LTR ERVK 0 390 1 1 1146 1174 245 6 77 chr3 73577310 73577486 -86022297 + Lx5 LINE L1 6893 7050 0 1 1146 238 352 0 78 chr3 73578100 73578125 -86021658 - ID4 SINE ID -4 79 9 1 1146 275 269 0 0 chr3 73578125 73578177 -86021606 - tRNA-Ala-GCY_ tRNA tRNA -21 54 3 1 1146 336 331 65 25 chr3 73578338 73578614 -86021169 - L1MC1 LINE L1 -190 6143 5857 1 1146 355 38 19 19 chr3 73578757 73578811 -86020972 + (TA)n Simple_repeat Simple_repeat 2 55 0 1 1146 3314 79 13 19 chr3 73578828 73579306 -86020477 - L1Md_F2 LINE L1 0 6582 6108 1 1146 402 335 134 32 chr3 73579511 73579698 -86020085 - Charlie24 DNA MER1_type -36 2414 2209 1 1146 264 59 0 0 chr3 73579698 73579732 -86020051 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 1 1146 402 335 134 32 chr3 73579732 73580044 -86019739 - Charlie24 DNA MER1_type -242 2208 1865 1 1146 451 352 71 38 chr3 73580406 73580681 -86019102 - Lx8 LINE L1 -143 7330 7048 1 1146 2812 47 6 0 chr3 73580681 73581025 -86018758 - ORR1A1 LTR MaLR 0 346 1 1 1146 451 352 71 38 chr3 73581025 73581171 -86018612 - Lx8 LINE L1 -426 7047 6895 1 1146 7712 143 27 3 chr3 73581328 73581686 -86018097 + Lx3C LINE L1 5692 6052 -924 1 1146 1082 29 15 0 chr3 73581686 73581823 -86017960 + (GGGAGA)n Simple_repeat Simple_repeat 5 143 0 1 1146 7712 143 27 3 chr3 73581823 73582716 -86017067 + Lx3C LINE L1 6053 6973 -3 1 1146 587 324 15 0 chr3 73583732 73583936 -86015847 + B3 SINE B2 5 211 -5 1 1146 23 0 0 0 chr3 73585298 73585321 -86014462 + AT_rich Low_complexity Low_complexity 1 23 0 1 1146 1236 139 60 13 chr3 73585527 73585761 -86014022 + Lx LINE L1 6406 6650 -4 1 1146 2089 167 76 5 chr3 73586423 73586833 -86012950 - Lx3C LINE L1 -2 6974 6536 1 1146 554 329 30 6 chr3 73586843 73587182 -86012601 - L1M3 LINE L1 -836 5304 4958 1 1146 487 351 54 41 chr3 73587395 73587689 -86012094 + MLT2B1 LTR ERVL 221 518 -2 1 1146 657 313 29 53 chr3 73587690 73588179 -86011604 - L1M3 LINE L1 -1180 4966 4478 1 1146 204 226 16 31 chr3 73588280 73588344 -86011439 + T-rich Low_complexity Low_complexity 4 66 0 1 1146 260 314 60 64 chr3 73588384 73588602 -86011181 - L1M3 LINE L1 -1832 4308 4092 1 1146 551 308 81 59 chr3 73588753 73589275 -86010508 + L1M2 LINE L1 2760 3292 -2851 1 1146 312 120 0 0 chr3 73589590 73589640 -86010143 + (TG)n Simple_repeat Simple_repeat 2 51 0 1 1146 285 51 0 0 chr3 73589652 73589691 -86010092 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 1 1146 1919 103 44 7 chr3 73589789 73590082 -86009701 + Lx3_Mus LINE L1 6695 6998 -11 1 1146 231 114 0 0 chr3 73590467 73590502 -86009281 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1 1146 27 49 0 0 chr3 73590555 73590596 -86009187 + AT_rich Low_complexity Low_complexity 1 41 0 1 1146 1976 292 81 2 chr3 73590596 73591203 -86008580 + Lx6 LINE L1 6795 7449 -11 1 1146 13462 200 62 55 chr3 73591223 73592064 -86007719 - L1_Mur3 LINE L1 -732 5148 4232 1 1146 4150 85 20 3 chr3 73592064 73592652 -86007131 + L1_Mus2 LINE L1 5957 6554 -12 1 1146 13462 200 62 55 chr3 73592652 73594781 -86005002 - L1_Mur3 LINE L1 -1649 4231 2084 1 1146 264 77 0 0 chr3 73594781 73594820 -86004963 + (TTG)n Simple_repeat Simple_repeat 1 39 0 1 1146 13462 202 61 53 chr3 73594820 73595812 -86003971 - L1_Mur3 LINE L1 -3797 2083 1154 1 1146 960 291 11 0 chr3 73595800 73596157 -86003626 - L1_Mur3 LINE L1 -6509 1219 859 1 1146 414 360 87 14 chr3 73596182 73596596 -86003187 - L1_Mur3 LINE L1 -7198 530 87 1 1146 22 70 0 0 chr3 73596603 73596646 -86003137 + AT_rich Low_complexity Low_complexity 1 43 0 1 1146 417 81 0 0 chr3 73597418 73597480 -86002303 + (CA)n Simple_repeat Simple_repeat 1 62 0 1 1146 393 116 0 0 chr3 73597487 73597556 -86002227 + (GA)n Simple_repeat Simple_repeat 2 70 0 1 1146 225 119 0 0 chr3 73598322 73598364 -86001419 + (CCAA)n Simple_repeat Simple_repeat 2 43 0 1 1146 21 0 0 0 chr3 73598668 73598689 -86001094 + AT_rich Low_complexity Low_complexity 1 21 0 1 1146 670 112 39 16 chr3 73598819 73598946 -86000837 - Lx3A LINE L1 -891 6090 5961 1 1146 2380 168 8 80 chr3 73598944 73599153 -86000630 + L1_Mus3 LINE L1 5408 5607 -276 1 1146 3387 114 44 0 chr3 73599153 73599671 -86000112 - L1_Mus3 LINE L1 0 6638 6098 1 1146 3161 126 6 33 chr3 73599671 73600188 -85999595 + L1_Mus3 LINE L1 5594 6096 -542 1 1146 840 327 117 24 chr3 73601049 73601509 -85998274 + MLT1D LTR MaLR 1 503 -2 1 1146 227 312 72 18 chr3 73602185 73602296 -85997487 - Lx8 LINE L1 -312 7161 7045 1 1146 2016 139 25 36 chr3 73602337 73602702 -85997081 - Lx LINE L1 -7 6647 6287 1 1146 230 284 59 140 chr3 73602751 73602972 -85996811 + MTC-int LTR MaLR 207 409 -849 1 1146 5799 33 55 0 chr3 73603177 73603908 -85995875 - L1Md_F3 LINE L1 -1 6583 5813 1 1146 864 204 32 11 chr3 73604319 73604507 -85995276 + B2_Mm2 SINE B2 2 193 -2 1 1146 232 367 29 48 chr3 73604915 73605018 -85994765 + B4A SINE B4 105 205 -87 1 1146 223 222 19 0 chr3 73606516 73606570 -85993213 + (TAA)n Simple_repeat Simple_repeat 3 57 0 1 1146 37 0 0 0 chr3 73607332 73607369 -85992414 + AT_rich Low_complexity Low_complexity 1 37 0 1 1146 265 43 21 42 chr3 73607421 73607469 -85992314 + (TCTA)n Simple_repeat Simple_repeat 4 50 0 1 1146 443 277 109 35 chr3 73607513 73607797 -85991986 - Tigger6b DNA MER2_type -38 1559 1255 1 1146 261 176 107 13 chr3 73608021 73608096 -85991687 - Lx9 LINE L1 -190 7454 7373 1 1146 226 301 48 12 chr3 73608124 73608208 -85991575 - L2 LINE L2 -3161 258 172 1 1146 200 160 51 39 chr3 73608758 73608836 -85990947 + (TATAA)n Simple_repeat Simple_repeat 5 83 0 1 1146 23 68 0 0 chr3 73610223 73610267 -85989516 + AT_rich Low_complexity Low_complexity 1 44 0 1 1146 2447 112 0 10 chr3 73610564 73610961 -85988822 + L1_Mur1 LINE L1 3556 3948 -1938 1 1146 2628 128 15 0 chr3 73610986 73611391 -85988392 - Lx3B LINE L1 -532 6441 6031 1 1146 245 340 19 9 chr3 73611875 73611982 -85987801 + ID_B1 SINE B4 117 224 0 1 1146 620 330 10 15 chr3 73611985 73612182 -85987601 + B3 SINE B2 8 203 -13 1 1146 1392 267 99 39 chr3 73612631 73612705 -85987078 + Lx9 LINE L1 7070 7130 -514 1 1146 210 37 0 0 chr3 73612705 73612732 -85987051 + (TTTG)n Simple_repeat Simple_repeat 3 29 0 1 1146 3100 167 75 6 chr3 73612734 73613283 -85986500 - Lx4A LINE L1 -16 7042 6456 1 1146 1392 267 99 39 chr3 73613283 73613740 -85986043 + Lx9 LINE L1 7131 7636 -8 1 1146 335 438 62 18 chr3 73613765 73614037 -85985746 + L1M4b LINE L1 289 572 -6762 1 1146 3141 111 15 6 chr3 73614764 73615235 -85984548 + MT2C_Mm LTR ERVL 1 475 0 1 1146 268 282 55 12 chr3 73615999 73616164 -85983619 + L1M4b LINE L1 3645 3816 -3190 1 1146 4072 145 17 0 chr3 73616652 73617480 -85982303 - Lx2 LINE L1 -744 6253 5412 1 1146 2552 170 64 25 chr3 73617493 73618079 -85981704 + Lx2 LINE L1 6023 6645 -352 1 1146 248 55 17 52 chr3 73618108 73618166 -85981617 + (CAAAAA)n Simple_repeat Simple_repeat 5 60 0 1 1146 307 343 61 24 chr3 73618946 73619242 -85980541 + L1M4b LINE L1 5604 5910 -1096 1 1146 6374 40 3 1 chr3 73620984 73621761 -85978022 + L1Md_F2 LINE L1 5791 6568 -14 1 1146 207 0 0 0 chr3 73621767 73621790 -85977993 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 1146 448 171 24 0 chr3 73622901 73622983 -85976800 + RMER6C LTR ERVK 104 187 -569 1 1146 270 220 40 0 chr3 73623002 73623102 -85976681 + (CAGTT)n Simple_repeat Simple_repeat 1 104 0 1 1146 1130 142 5 5 chr3 73623114 73623305 -85976478 + RMER6C LTR ERVK 500 690 0 1 1146 268 202 25 0 chr3 73623313 73623392 -85976391 + (TA)n Simple_repeat Simple_repeat 2 82 0 1 1146 183 328 30 0 chr3 73623829 73623896 -85975887 + MIR SINE MIR 74 142 -120 2 1146 23 33 0 0 chr3 73623927 73623957 -85975826 + AT_rich Low_complexity Low_complexity 1 30 0 2 1146 333 319 37 63 chr3 73623957 73624184 -85975599 + MTE2a LTR MaLR 7 242 -179 2 1146 3959 78 30 2 chr3 73624415 73624978 -85974805 + Lx3_Mus LINE L1 6431 7009 0 2 1146 1121 227 70 90 chr3 73625186 73625574 -85974209 - ORR1C2 LTR MaLR 0 384 5 2 1146 2880 252 62 125 chr3 73625575 73627032 -85972751 - ORR1C2-int LTR MaLR 0 1370 5 2 1146 455 189 0 86 chr3 73627036 73627152 -85972631 - ORR1C2 LTR MaLR 0 384 279 2 1146 251 242 15 29 chr3 73627274 73627342 -85972441 + GA-rich Low_complexity Low_complexity 6 72 0 2 1146 803 169 19 120 chr3 73627345 73627553 -85972230 - ORR1C2 LTR MaLR -190 194 8 2 1146 582 54 0 0 chr3 73627663 73627737 -85972046 + (TA)n Simple_repeat Simple_repeat 2 75 0 2 1146 24 53 0 0 chr3 73628206 73628244 -85971539 + AT_rich Low_complexity Low_complexity 1 38 0 2 1146 1865 102 11 0 chr3 73628281 73628546 -85971237 - L1_Mus3 LINE L1 -7 6631 6364 2 1146 3545 79 30 1 chr3 73628546 73629160 -85970623 + L1_Mus2 LINE L1 5435 6078 -488 2 1146 492 59 0 0 chr3 73629176 73629244 -85970539 + (CA)n Simple_repeat Simple_repeat 2 69 0 2 1146 845 256 98 4 chr3 73629991 73630226 -85969557 + MTD LTR MaLR 12 268 -151 2 1146 186 250 62 15 chr3 73630403 73630468 -85969315 + L3 LINE CR1 4171 4238 -251 2 1146 1232 268 77 73 chr3 73630594 73631274 -85968509 - Lx7 LINE L1 -2 7694 7013 2 1146 515 16 16 0 chr3 73631388 73631452 -85968331 + (GA)n Simple_repeat Simple_repeat 2 66 0 2 1146 607 330 25 5 chr3 73631563 73631761 -85968022 + B3 SINE B2 13 214 -2 2 1146 748 203 20 0 chr3 73631853 73632001 -85967782 - L1_Mur2 LINE L1 -841 5036 4886 2 1146 449 369 23 0 chr3 73632250 73632426 -85967357 + ID_B1 SINE B4 19 198 -26 2 1146 207 0 0 0 chr3 73632505 73632528 -85967255 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2 1146 21 57 0 0 chr3 73633263 73633298 -85966485 + AT_rich Low_complexity Low_complexity 1 35 0 2 1146 387 0 0 0 chr3 73633626 73633669 -85966114 + (T)n Simple_repeat Simple_repeat 1 43 0 2 1146 293 302 136 54 chr3 73636011 73636158 -85963625 - B3A SINE B2 -38 160 2 2 1146 369 0 0 0 chr3 73636526 73636567 -85963216 + (TG)n Simple_repeat Simple_repeat 2 42 0 2 1146 456 62 0 0 chr3 73636732 73636796 -85962987 + (TG)n Simple_repeat Simple_repeat 1 64 0 2 1146 791 10 10 0 chr3 73637254 73637350 -85962433 + (CA)n Simple_repeat Simple_repeat 2 98 0 2 1146 1648 158 28 70 chr3 73637903 73638230 -85961553 + ORR1A4 LTR MaLR 17 329 0 2 1146 307 200 67 0 chr3 73638617 73638707 -85961076 - Lx9 LINE L1 -2 7642 7547 2 1146 510 96 0 0 chr3 73638714 73638787 -85960996 + (CA)n Simple_repeat Simple_repeat 1 73 0 2 1146 299 311 126 31 chr3 73639249 73639304 -85960479 - L1MB8 LINE L1 -261 5917 5870 2 1146 490 102 10 39 chr3 73639304 73639406 -85960377 + Lx LINE L1 6548 6646 -8 2 1146 299 311 126 31 chr3 73639406 73639765 -85960018 - L1MB8 LINE L1 -309 5869 5469 2 1146 369 0 0 0 chr3 73639765 73639806 -85959977 + (TTA)n Simple_repeat Simple_repeat 1 41 0 2 1146 299 311 126 31 chr3 73639806 73639898 -85959885 - L1MB8 LINE L1 -710 5468 5363 2 1146 351 247 82 51 chr3 73639901 73640059 -85959724 - L1MB8 LINE L1 -1658 4488 4326 2 1146 624 337 35 12 chr3 73640388 73640646 -85959137 - Lx8 LINE L1 -797 6676 6413 2 1146 35 78 0 0 chr3 73640709 73640786 -85958997 + AT_rich Low_complexity Low_complexity 1 77 0 2 1146 4215 222 36 51 chr3 73641015 73642863 -85956920 + Lx2B LINE L1 5183 6997 -3 2 1146 31 58 0 14 chr3 73642903 73642929 -85956854 + AT_rich Low_complexity Low_complexity 1 26 0 2 1146 5400 81 25 0 chr3 73642929 73643648 -85956135 + L1_Mus1 LINE L1 5831 6567 0 2 1146 31 58 0 14 chr3 73643648 73643691 -85956092 + AT_rich Low_complexity Low_complexity 1 43 0 2 1146 12088 143 47 7 chr3 73644131 73646410 -85953373 - L1_Mur2 LINE L1 -508 5369 3001 2 1146 842 98 66 0 chr3 73646414 73646536 -85953247 - B1_Mus1 SINE Alu -18 130 1 2 1146 24 32 0 0 chr3 73647287 73647318 -85952465 + AT_rich Low_complexity Low_complexity 1 31 0 2 1146 456 19 0 0 chr3 73648148 73648201 -85951582 + (TG)n Simple_repeat Simple_repeat 1 53 0 2 1146 809 138 0 48 chr3 73648320 73648487 -85951296 + Lx2A1 LINE L1 6850 7008 0 2 1146 348 24 0 0 chr3 73648511 73648552 -85951231 + (TG)n Simple_repeat Simple_repeat 1 41 0 2 1146 288 0 0 0 chr3 73648552 73648583 -85951200 + (GA)n Simple_repeat Simple_repeat 1 32 0 2 1146 333 0 0 0 chr3 73648585 73648622 -85951161 + (GGTTG)n Simple_repeat Simple_repeat 3 39 0 2 1146 207 111 28 0 chr3 73649142 73649178 -85950605 + (TTTG)n Simple_repeat Simple_repeat 4 40 0 2 1146 512 285 230 19 chr3 73649178 73649443 -85950340 - MTC LTR MaLR -52 369 49 2 1146 704 86 9 0 chr3 73649478 73649583 -85950200 + (GAAA)n Simple_repeat Simple_repeat 2 107 0 2 1146 1096 93 6 0 chr3 73649583 73649755 -85950028 - MusHAL1 LINE L1 -728 1984 1812 2 1146 10799 129 13 17 chr3 73649755 73651538 -85948245 + L1_Mm LINE L1 3742 5516 -367 2 1146 393 137 14 0 chr3 73651536 73651609 -85948174 - MusHAL1 LINE L1 -1260 1452 1379 2 1146 273 128 0 0 chr3 73651937 73651984 -85947799 + (TG)n Simple_repeat Simple_repeat 2 48 0 2 1146 396 0 0 0 chr3 73652409 73652453 -85947330 + (CA)n Simple_repeat Simple_repeat 2 45 0 2 1146 510 105 0 10 chr3 73654398 73654494 -85945289 - L1_Mur1 LINE L1 -554 5332 5238 2 1146 6767 129 11 17 chr3 73654494 73655602 -85944181 + Lx3A LINE L1 5871 6971 -10 2 1146 324 0 0 0 chr3 73655603 73655639 -85944144 + (TAA)n Simple_repeat Simple_repeat 1 36 0 2 1146 279 0 0 0 chr3 73655639 73655670 -85944113 + (GAA)n Simple_repeat Simple_repeat 1 31 0 2 1146 2071 137 3 3 chr3 73656108 73656438 -85943345 + Lx LINE L1 6320 6649 -5 2 1146 229 324 15 0 chr3 73656680 73656748 -85943035 - MTEb LTR MaLR -307 72 4 2 1146 1039 313 84 9 chr3 73656964 73657299 -85942484 + ORR1D2 LTR MaLR 11 370 0 2 1146 213 65 0 0 chr3 73658296 73658327 -85941456 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 2 1146 380 333 121 29 chr3 73659014 73659187 -85940596 + Lx8 LINE L1 6483 6671 -802 2 1146 338 344 18 47 chr3 73659186 73659357 -85940426 + Lx8 LINE L1 6794 6959 -514 2 1146 9704 27 1 0 chr3 73659416 73660557 -85939226 + L1_Mm LINE L1 4521 5662 -221 2 143 38431 7 0 0 chr3 73660552 73666127 -85933656 + L1Md_T LINE L1 12 5586 -297 2 1147 8486 31 0 0 chr3 73666127 73667122 -85932661 + L1Md_T LINE L1 5587 6581 -1 2 1147 2419 187 56 4 chr3 73667426 73667910 -85931873 - Lx3A LINE L1 -9 6972 6464 2 1147 35272 35 0 0 chr3 73667971 73673627 -85926156 + L1Md_T LINE L1 1 5589 -297 2 1147 8952 7 0 0 chr3 73673627 73674623 -85925160 + L1Md_T LINE L1 5590 6585 0 2 1147 227 305 0 50 chr3 73674971 73675071 -85924712 - L1M2 LINE L1 -499 5798 5704 2 1147 8740 150 58 38 chr3 73675762 73678371 -85921412 + L1VL2 LINE L1 1 2436 -1179 2 1147 3636 26 0 0 chr3 73678355 73678785 -85920998 + L1Md_T LINE L1 5157 5586 -297 2 1147 8420 33 0 0 chr3 73678785 73679776 -85920007 + L1Md_T LINE L1 5587 6577 -5 2 1147 255 61 0 0 chr3 73679832 73679865 -85919918 + (A)n Simple_repeat Simple_repeat 1 33 0 2 1147 284 254 28 0 chr3 73679894 73679980 -85919803 + L1MA5A LINE L1 5818 5905 -398 2 1147 524 214 43 35 chr3 73680265 73680465 -85919318 - L1M3 LINE L1 -890 5253 5051 2 1147 1397 89 0 5 chr3 73680465 73680657 -85919126 + B2_Mm2 SINE B2 2 192 -3 2 1147 11512 193 8 16 chr3 73680664 73683092 -85916691 + L1_Mur1 LINE L1 2712 5119 -767 2 1147 5054 142 19 18 chr3 73683092 73683945 -85915838 + Lx LINE L1 5796 6649 -5 2 1147 204 158 0 0 chr3 73684408 73684446 -85915337 + CT-rich Low_complexity Low_complexity 1 38 0 2 1147 291 93 0 0 chr3 73684460 73684503 -85915280 + (GA)n Simple_repeat Simple_repeat 2 44 0 2 1147 792 32 0 0 chr3 73685470 73685565 -85914218 + (TG)n Simple_repeat Simple_repeat 1 95 0 2 1147 374 173 0 0 chr3 73685583 73685664 -85914119 + Lx6 LINE L1 7377 7457 -3 2 1147 709 246 115 24 chr3 73685705 73686001 -85913782 + Lx9 LINE L1 7307 7629 -15 2 1147 23 0 0 0 chr3 73686888 73686911 -85912872 + AT_rich Low_complexity Low_complexity 1 23 0 2 1147 21 36 0 0 chr3 73687162 73687190 -85912593 + AT_rich Low_complexity Low_complexity 1 28 0 2 1147 217 382 0 116 chr3 73687714 73687886 -85911897 + ID_B1 SINE B4 19 170 -54 2 1147 441 304 6 0 chr3 73688092 73688428 -85911355 + (CA)n Simple_repeat Simple_repeat 1 338 0 2 1147 210 71 0 0 chr3 73688820 73688848 -85910935 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 2 1147 25 31 0 0 chr3 73688885 73688917 -85910866 + AT_rich Low_complexity Low_complexity 1 32 0 2 1147 797 263 27 14 chr3 73689119 73689339 -85910444 + Lx7 LINE L1 6753 6975 -721 2 1147 468 0 0 0 chr3 73689342 73689394 -85910389 + (GA)n Simple_repeat Simple_repeat 2 53 0 2 1147 510 291 73 14 chr3 73689408 73689683 -85910100 + Lx7 LINE L1 7124 7414 -282 2 1147 247 246 40 101 chr3 73689816 73689965 -85909818 + MER2 DNA MER2_type 58 197 -148 2 1147 412 278 0 0 chr3 73690089 73690179 -85909604 + RMER12 LTR ERVK 1 90 -1232 2 1147 3177 78 27 2 chr3 73690197 73690671 -85909112 - L1_Mus3 LINE L1 0 6638 6187 2 1147 480 358 99 18 chr3 73690677 73691069 -85908714 + Lx8 LINE L1 7047 7470 -3 2 1147 1031 115 6 0 chr3 73692235 73692400 -85907383 + Lx2 LINE L1 6820 6985 -12 2 1147 1717 317 41 40 chr3 73692815 73693545 -85906238 - Lx9 LINE L1 -517 7127 6397 2 1147 277 149 82 31 chr3 73693583 73693680 -85906103 + (TAGA)n Simple_repeat Simple_repeat 1 102 0 2 1147 296 269 9 19 chr3 73694014 73694120 -85905663 - Lx2B LINE L1 -2 6998 6894 2 1147 324 64 0 0 chr3 73694455 73694502 -85905281 + (TG)n Simple_repeat Simple_repeat 2 48 0 2 1147 4943 47 0 0 chr3 73695001 73695600 -85904183 - L1Md_T LINE L1 -2 6580 5982 2 1147 4348 16 0 0 chr3 73695600 73696095 -85903688 + L1_Mm LINE L1 5244 5738 -145 2 1147 657 0 0 0 chr3 73697075 73697148 -85902635 + (GA)n Simple_repeat Simple_repeat 2 74 0 2 1147 642 360 48 17 chr3 73697218 73697696 -85902087 + Lx8 LINE L1 6132 6624 -849 2 1147 321 223 32 24 chr3 73697732 73697856 -85901927 - Lx9 LINE L1 0 7644 7520 3 1147 1322 247 16 9 chr3 73697914 73698233 -85901550 - Lx9 LINE L1 -300 7344 7024 3 1147 450 236 73 48 chr3 73698230 73698395 -85901388 + Lx7 LINE L1 6641 6809 -887 3 1147 361 315 124 23 chr3 73698461 73698718 -85901065 + Lx7 LINE L1 6976 7258 -438 3 1147 4017 129 23 11 chr3 73699479 73700122 -85899661 - Lx LINE L1 -6 6648 5998 3 1147 364 158 63 38 chr3 73700197 73700216 -85899567 - ID_B1 SINE B4 -62 162 82 3 1147 411 83 0 0 chr3 73700216 73700276 -85899507 - B1_Mur4 SINE Alu -90 60 1 3 1147 1091 191 139 5 chr3 73700277 73700822 -85898961 - L1_Mur2 LINE L1 -4379 1498 836 3 1147 1616 203 95 11 chr3 73701081 73701439 -85898344 + ORR1B1 LTR MaLR 7 394 0 3 1147 343 274 77 41 chr3 73701439 73701660 -85898123 + L1M5 LINE L1 2683 2911 -3235 3 1147 270 263 118 0 chr3 73702149 73702225 -85897558 - MLT1B LTR MaLR -45 422 338 3 1147 590 268 35 29 chr3 73702313 73702486 -85897297 - B3 SINE B2 -13 203 30 3 1147 355 286 117 49 chr3 73702451 73702731 -85897052 - MLT1B LTR MaLR -129 338 29 3 1147 330 335 68 51 chr3 73703642 73703878 -85895905 - RLTR15 LTR ERVK -37 322 83 3 1147 367 279 24 54 chr3 73704019 73704186 -85895597 - RLTR43A LTR ERVK -2 362 201 3 1147 928 248 110 15 chr3 73704807 73705134 -85894649 + Lx9 LINE L1 7281 7638 -6 3 1147 343 367 101 52 chr3 73705327 73705655 -85894128 + ORR1E LTR MaLR 8 351 -8 3 1147 276 381 62 16 chr3 73705850 73705978 -85893805 - B1F SINE Alu -7 142 9 3 1147 48 0 0 0 chr3 73706223 73706271 -85893512 + AT_rich Low_complexity Low_complexity 1 48 0 3 1147 333 68 0 0 chr3 73707959 73708003 -85891780 + (TTTA)n Simple_repeat Simple_repeat 1 44 0 3 1147 459 140 0 97 chr3 73708003 73708106 -85891677 - Lx3A LINE L1 -15 6966 6874 3 1147 192 40 0 0 chr3 73708174 73708199 -85891584 + (TG)n Simple_repeat Simple_repeat 2 26 0 3 1147 24 32 0 0 chr3 73708347 73708378 -85891405 + AT_rich Low_complexity Low_complexity 1 31 0 3 1147 878 274 44 58 chr3 73708379 73708743 -85891040 + RLTR15 LTR ERVK 1 359 0 3 1147 23 33 0 0 chr3 73709086 73709116 -85890667 + AT_rich Low_complexity Low_complexity 1 30 0 3 1147 1370 253 126 57 chr3 73709515 73709906 -85889877 + RMER6C LTR ERVK 3 394 -296 3 1147 300 111 0 0 chr3 73709906 73709951 -85889832 + (CAGTT)n Simple_repeat Simple_repeat 4 48 0 3 1147 1370 229 192 111 chr3 73709951 73710278 -85889505 + RMER6C LTR ERVK 363 697 -59 3 1147 670 239 56 12 chr3 73710270 73710431 -85889352 + RMER6D LTR ERVK 553 720 0 3 1147 1242 223 170 27 chr3 73711598 73711934 -85887849 + ORR1C2 LTR MaLR 1 384 0 3 1147 3533 18 0 0 chr3 73712595 73712991 -85886792 + MTA_Mm LTR MaLR 1 396 0 3 1147 441 0 0 0 chr3 73714530 73714579 -85885204 + (TG)n Simple_repeat Simple_repeat 2 50 0 3 1147 244 273 54 62 chr3 73714901 73715030 -85884753 - MLT1D LTR MaLR -1 504 377 3 1147 1172 230 78 17 chr3 73715602 73716219 -85883564 + L1_Mur2 LINE L1 860 1587 -4290 3 1147 2614 167 0 28 chr3 73716227 73716684 -85883099 - Lx LINE L1 -278 6376 5933 3 1147 1398 167 44 4 chr3 73716684 73716955 -85882828 + Lx LINE L1 6373 6654 0 3 1147 2378 192 26 9 chr3 73716965 73717434 -85882349 + L1_Mur2 LINE L1 1581 2053 -3827 3 1147 378 0 0 0 chr3 73717434 73717476 -85882307 + (CA)n Simple_repeat Simple_repeat 2 43 0 3 1147 2378 186 15 147 chr3 73717476 73717762 -85882021 + L1_Mur2 LINE L1 2049 2233 -3644 3 1147 2270 208 60 12 chr3 73717762 73718244 -85881539 + RLTR16 LTR ERVK 1 505 0 3 1147 2824 205 76 56 chr3 73718244 73718446 -85881337 + L1_Mur2 LINE L1 2228 2438 -3439 3 1147 1103 80 0 0 chr3 73718446 73718584 -85881199 + B1_Mm SINE Alu 1 138 -9 3 1147 198 0 0 0 chr3 73718584 73718606 -85881177 + (CCCCCA)n Simple_repeat Simple_repeat 2 23 0 3 1147 2824 205 76 56 chr3 73718606 73719219 -85880564 + L1_Mur2 LINE L1 2439 3059 -2818 3 1147 907 302 40 11 chr3 73721097 73721445 -85878338 + Lx8 LINE L1 6987 7344 -129 3 1147 28 29 0 0 chr3 73722066 73722101 -85877682 + AT_rich Low_complexity Low_complexity 1 35 0 3 1147 5711 57 28 1 chr3 73722696 73723438 -85876345 - L1Md_F3 LINE L1 -3 6581 5820 3 1147 4981 39 1 0 chr3 73723439 73724340 -85875443 - L1Md_F2 LINE L1 -381 6201 5300 3 1147 438 20 0 0 chr3 73724567 73724618 -85875165 + (TA)n Simple_repeat Simple_repeat 2 52 0 3 1147 22 56 0 0 chr3 73724694 73724730 -85875053 + AT_rich Low_complexity Low_complexity 1 36 0 3 1147 1900 228 9 7 chr3 73725141 73725561 -85874222 - MTC LTR MaLR 0 421 1 3 1147 2331 214 59 31 chr3 73725561 73725934 -85873849 - MTC-int LTR MaLR 0 1258 876 3 1147 1992 152 3 3 chr3 73725934 73726245 -85873538 - RLTR10E LTR ERVK 0 311 1 3 1147 2331 214 59 31 chr3 73726245 73726479 -85873304 - MTC-int LTR MaLR -383 875 634 3 1147 4349 193 28 1 chr3 73726479 73727346 -85872437 + L1_Mm LINE L1 4715 5604 -279 3 1147 724 280 175 27 chr3 73727348 73727645 -85872138 - MTC-int LTR MaLR -864 394 54 3 1147 180 264 0 70 chr3 73727982 73728039 -85871744 - L4 LINE RTE -147 1882 1830 3 1147 997 115 0 7 chr3 73728985 73729134 -85870649 + B1_Mus1 SINE Alu 1 148 0 3 1147 376 340 13 40 chr3 73729243 73729393 -85870390 - MTEb LTR MaLR -225 154 9 3 1147 255 114 0 0 chr3 73729655 73729699 -85870084 + (TG)n Simple_repeat Simple_repeat 1 44 0 3 1147 293 267 76 17 chr3 73730014 73730132 -85869651 + MLT1A1 LTR MaLR 3 127 -281 3 1147 24 53 0 0 chr3 73730170 73730208 -85869575 + AT_rich Low_complexity Low_complexity 1 38 0 3 1147 583 310 99 13 chr3 73730436 73730668 -85869115 + Tigger1 DNA MER2_type 145 396 -2022 3 1147 350 332 102 47 chr3 73730740 73730996 -85868787 + Tigger1 DNA MER2_type 507 776 -1642 3 1147 845 182 35 17 chr3 73730996 73731169 -85868614 - L1_Mur2 LINE L1 -2055 3822 3647 3 1147 608 223 13 0 chr3 73731170 73731327 -85868456 + L1_Mur2 LINE L1 3862 4020 -1857 3 1147 1006 219 44 0 chr3 73731324 73731552 -85868231 + L1_Mur2 LINE L1 4239 4476 -1401 3 1147 242 154 192 0 chr3 73731669 73731721 -85868062 + L1_Mur2 LINE L1 4450 4511 -1366 3 1147 425 338 71 4 chr3 73731722 73731948 -85867835 + Tigger1 DNA MER2_type 772 1012 -1406 3 1147 276 130 0 0 chr3 73732017 73732063 -85867720 + (CAA)n Simple_repeat Simple_repeat 2 47 0 3 1147 283 306 56 8 chr3 73732067 73732192 -85867591 + Tigger1 DNA MER2_type 1162 1292 -1126 3 1147 219 36 0 0 chr3 73732192 73732220 -85867563 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 3 1147 301 102 0 0 chr3 73732237 73732286 -85867497 + L1_Mus1 LINE L1 6519 6567 0 3 1147 1024 307 12 31 chr3 73732329 73732655 -85867128 + RLTR17 LTR ERVK 105 424 -268 3 1147 353 302 96 35 chr3 73732758 73732957 -85866826 - Lx9 LINE L1 -438 7206 6996 3 1147 22 0 0 0 chr3 73732964 73732986 -85866797 + AT_rich Low_complexity Low_complexity 1 22 0 3 1147 441 275 132 20 chr3 73732991 73733195 -85866588 - Lx9 LINE L1 -634 7010 6784 3 1147 249 287 85 6 chr3 73733332 73733549 -85866234 + L1_Mur3 LINE L1 5197 5431 -731 3 1147 201 158 0 0 chr3 73734083 73734121 -85865662 + (TAA)n Simple_repeat Simple_repeat 1 38 0 3 1147 203 195 24 0 chr3 73734745 73734786 -85864997 + CT-rich Low_complexity Low_complexity 2 43 0 3 1147 5169 91 11 26 chr3 73734792 73735548 -85864235 - L1_Mus2 LINE L1 0 6566 5823 3 1147 393 58 0 0 chr3 73735548 73735600 -85864183 + L1_Mus2 LINE L1 5756 5807 -831 3 1147 536 309 15 55 chr3 73735767 73735842 -85863941 - RMER15 LTR ERVL -86 489 419 3 1147 3233 48 5 0 chr3 73735842 73736236 -85863547 + MTA_Mm LTR MaLR 1 396 0 3 1147 536 309 15 55 chr3 73736236 73736359 -85863424 - RMER15 LTR ERVL -157 418 299 3 1147 321 370 0 0 chr3 73737653 73737826 -85861957 + (TGG)n Simple_repeat Simple_repeat 1 173 0 3 1147 3239 144 17 14 chr3 73737834 73738419 -85861364 + RLTR19-int LTR ERVK 1430 2016 -4121 3 1147 451 304 127 0 chr3 73738535 73738716 -85861067 - MLT1D LTR MaLR 0 505 302 3 1147 22 0 0 0 chr3 73739335 73739357 -85860426 + AT_rich Low_complexity Low_complexity 1 22 0 3 1147 423 230 217 6 chr3 73739360 73739535 -85860248 + Lx9 LINE L1 7278 7489 -155 3 1147 213 194 0 0 chr3 73739567 73739603 -85860180 + (CA)n Simple_repeat Simple_repeat 1 36 0 3 1147 306 0 0 0 chr3 73739631 73739665 -85860118 + (TA)n Simple_repeat Simple_repeat 1 34 0 3 1147 327 78 0 0 chr3 73739666 73739717 -85860066 + (CAGA)n Simple_repeat Simple_repeat 2 52 0 3 1147 608 26 13 0 chr3 73740556 73740634 -85859149 + (TCTA)n Simple_repeat Simple_repeat 3 81 0 3 1147 462 304 88 15 chr3 73740666 73740803 -85858980 - RSINE1 SINE B4 -4 161 15 3 1147 25 0 0 0 chr3 73741775 73741800 -85857983 + AT_rich Low_complexity Low_complexity 1 25 0 3 1147 630 107 0 59 chr3 73741905 73742024 -85857759 - L1Md_F2 LINE L1 -12 6570 6459 3 1147 383 78 0 0 chr3 73742024 73742075 -85857708 + L1Md_F2 LINE L1 6409 6459 -123 3 1147 241 229 0 0 chr3 73742371 73742419 -85857364 + (TG)n Simple_repeat Simple_repeat 2 49 0 3 1147 28 48 0 0 chr3 73743490 73743532 -85856251 + AT_rich Low_complexity Low_complexity 1 42 0 3 1147 1440 214 115 20 chr3 73744227 73744403 -85855380 - BGLII_B LTR ERVK -1 440 248 3 1147 708 35 0 0 chr3 73744403 73744490 -85855293 + (TCC)n Simple_repeat Simple_repeat 3 89 0 3 1147 1440 214 115 20 chr3 73744490 73744713 -85855070 - BGLII_B LTR ERVK -194 247 4 3 1147 2389 119 49 150 chr3 73744868 73745106 -85854677 - Lx2B LINE L1 -1021 5952 5751 3 1147 1127 89 0 0 chr3 73745106 73745252 -85854531 - B1_Mus2 SINE Alu -1 146 1 3 1147 2389 118 39 146 chr3 73745252 73745596 -85854187 - Lx2B LINE L1 -130 5756 5393 3 1147 5461 174 8 24 chr3 73745597 73746648 -85853135 + Lx3B LINE L1 5936 6969 -4 3 1147 1076 248 77 32 chr3 73746781 73747190 -85852593 - MT2A LTR ERVL -34 567 3 3 1147 3527 252 30 64 chr3 73747877 73748462 -85851321 - Lx7 LINE L1 -310 7150 6740 3 1147 387 0 0 0 chr3 73748462 73748505 -85851278 + (TA)n Simple_repeat Simple_repeat 1 43 0 3 1147 3527 242 77 77 chr3 73748505 73749723 -85850060 - Lx7 LINE L1 -957 6739 5396 3 1147 225 65 0 0 chr3 73749903 73749934 -85849849 + (T)n Simple_repeat Simple_repeat 1 31 0 3 1147 27 29 0 0 chr3 73750011 73750045 -85849738 + AT_rich Low_complexity Low_complexity 1 34 0 3 1147 504 251 5 3 chr3 73750045 73750196 -85849587 + L1M2 LINE L1 4744 4952 -1191 3 1147 25 31 0 0 chr3 73750203 73750235 -85849548 + AT_rich Low_complexity Low_complexity 1 32 0 3 1147 30 69 0 0 chr3 73751320 73751378 -85848405 + AT_rich Low_complexity Low_complexity 1 58 0 3 1147 569 0 42 0 chr3 73751765 73751836 -85847947 + (TTTTG)n Simple_repeat Simple_repeat 2 75 0 3 1147 532 343 14 47 chr3 73752221 73752435 -85847348 - B3 SINE B2 -7 209 3 3 1147 390 339 90 28 chr3 73752497 73752752 -85847031 - Lx8 LINE L1 -83 7390 7120 3 1147 659 201 0 6 chr3 73752974 73753139 -85846644 + (TA)n Simple_repeat Simple_repeat 1 164 0 3 1147 1445 184 0 69 chr3 73753141 73753432 -85846351 + ORR1A3 LTR MaLR 2 272 -54 3 1147 741 236 81 15 chr3 73753593 73753791 -85845992 + MERVL_2A-int LTR ERVL 4901 5111 -650 3 1147 1151 275 32 3 chr3 73753901 73754248 -85845535 + MERVL_2A-int LTR ERVL 5124 5480 -281 3 1147 628 293 155 78 chr3 73754800 73755069 -85844714 + MT2A LTR ERVL 7 271 -262 3 1147 198 0 0 0 chr3 73755069 73755091 -85844692 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 3 1147 4890 152 79 8 chr3 73755093 73756015 -85843768 - Lx2A1 LINE L1 0 7008 6021 3 1147 628 293 155 78 chr3 73756015 73756142 -85843641 + MT2A LTR ERVL 272 431 -102 3 1147 212 361 188 12 chr3 73756604 73756764 -85843019 - MIR3 SINE MIR -19 189 2 4 1147 830 268 30 15 chr3 73757924 73758193 -85841590 - Lx7 LINE L1 -1357 6339 6067 4 1147 351 0 0 0 chr3 73758422 73758461 -85841322 + (TATG)n Simple_repeat Simple_repeat 2 40 0 4 1147 3067 112 4 11 chr3 73758461 73758911 -85840872 - Lx3A LINE L1 -2 6979 6533 4 1147 294 143 0 0 chr3 73758911 73758960 -85840823 + (T)n Simple_repeat Simple_repeat 1 49 0 4 1147 6996 90 8 6 chr3 73758962 73759937 -85839846 - L1Md_F2 LINE L1 0 6582 5606 4 1147 2961 138 50 22 chr3 73759933 73760475 -85839308 - Lx3A LINE L1 -450 6531 5975 4 1147 911 68 0 63 chr3 73760442 73760584 -85839199 + Lx3A LINE L1 5858 5990 -991 4 1147 21 36 0 0 chr3 73760648 73760676 -85839107 + AT_rich Low_complexity Low_complexity 1 28 0 4 1147 538 300 112 7 chr3 73760912 73761191 -85838592 - ORR1E LTR MaLR -43 336 1 4 1147 3924 215 68 12 chr3 73761251 73761544 -85838239 + Lx4A LINE L1 5625 5994 -1064 4 1147 2081 205 9 25 chr3 73761544 73761985 -85837798 - Lx4A LINE L1 -1 7057 6624 4 1147 3924 208 71 12 chr3 73761985 73762627 -85837156 + Lx4A LINE L1 5995 6649 -409 4 1147 2514 114 17 40 chr3 73762732 73763153 -85836630 - IAPLTR2a LTR ERVK 0 411 1 4 1147 1033 308 28 16 chr3 73763314 73763677 -85836106 + Lx8 LINE L1 6229 6595 -878 4 1147 524 325 48 69 chr3 73763998 73764289 -85835494 + Lx8 LINE L1 6941 7225 -248 4 1147 530 329 32 72 chr3 73764909 73765158 -85834625 + MTE2a LTR MaLR 133 371 -8 4 1147 578 14 14 0 chr3 73766303 73766374 -85833409 + (TAGA)n Simple_repeat Simple_repeat 1 72 0 4 1147 22 80 0 0 chr3 73766387 73766437 -85833346 + AT_rich Low_complexity Low_complexity 1 50 0 4 1147 212 0 0 35 chr3 73766587 73766616 -85833167 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 4 1147 25 0 0 0 chr3 73766626 73766651 -85833132 + AT_rich Low_complexity Low_complexity 1 25 0 4 1147 1051 38 0 0 chr3 73766651 73766783 -85833000 - B1_Mm SINE Alu -5 142 11 4 1147 438 306 14 14 chr3 73766888 73767034 -85832749 + RSINE1 SINE B4 1 146 -19 4 1147 685 329 94 16 chr3 73767107 73767851 -85831932 + L1_Mur3 LINE L1 4392 5193 -687 4 1147 910 167 0 11 chr3 73767993 73768175 -85831608 + CT-rich Low_complexity Low_complexity 1 180 0 4 1147 180 0 0 0 chr3 73768176 73768196 -85831587 + (TC)n Simple_repeat Simple_repeat 2 21 0 4 1147 4262 130 13 1 chr3 73768196 73768866 -85830917 - Lx3A LINE L1 -6 6975 6298 4 1147 1560 164 3 4 chr3 73768874 73769146 -85830637 + L1_Mm LINE L1 5528 5808 -386 4 1147 555 265 29 0 chr3 73769164 73769300 -85830483 + ORR1D1 LTR MaLR 1 140 -234 4 1147 2289 37 3 54 chr3 73769608 73769922 -85829861 + L1Md_F3 LINE L1 6273 6570 -14 4 1147 213 121 0 0 chr3 73769966 73769999 -85829784 + (A)n Simple_repeat Simple_repeat 1 33 0 4 1147 21 36 0 0 chr3 73770340 73770368 -85829415 + AT_rich Low_complexity Low_complexity 1 28 0 4 1147 1475 302 31 12 chr3 73771141 73771806 -85827977 + Lx6 LINE L1 6455 7460 0 4 1147 994 303 115 3 chr3 73771831 73772195 -85827588 - Lx6 LINE L1 -237 7223 6819 4 1147 3354 249 52 45 chr3 73772211 73773465 -85826318 - Lx6 LINE L1 -766 6694 5418 4 1147 666 178 233 33 chr3 73773465 73773645 -85826138 - B3 SINE B2 0 216 1 4 1147 3354 223 40 32 chr3 73773645 73774142 -85825641 - Lx6 LINE L1 -463 5417 4920 4 1147 1123 219 50 45 chr3 73774128 73774478 -85825305 - Lx6 LINE L1 -4309 1571 1203 4 1147 200 86 0 28 chr3 73774478 73774514 -85825269 + (TTG)n Simple_repeat Simple_repeat 1 35 0 4 1147 456 199 36 119 chr3 73774514 73774578 -85825205 - Lx6 LINE L1 -6526 1202 1161 4 1147 240 200 150 0 chr3 73774600 73774680 -85825103 - Lx6 LINE L1 -6509 1219 1128 4 1147 3761 14 0 0 chr3 73774688 73775119 -85824664 + L1Md_T LINE L1 5156 5586 -297 4 1147 8023 54 0 0 chr3 73775119 73776115 -85823668 + L1Md_T LINE L1 5587 6582 0 4 1147 256 262 0 24 chr3 73776426 73776508 -85823275 + Lx8 LINE L1 7394 7473 0 4 1147 21 0 0 0 chr3 73776744 73776765 -85823018 + AT_rich Low_complexity Low_complexity 1 21 0 4 1147 21 0 0 0 chr3 73778504 73778525 -85821258 + AT_rich Low_complexity Low_complexity 1 21 0 4 1147 28 61 0 0 chr3 73778538 73778587 -85821196 + AT_rich Low_complexity Low_complexity 1 49 0 4 1147 21 0 0 0 chr3 73779353 73779374 -85820409 + AT_rich Low_complexity Low_complexity 1 21 0 4 1147 540 56 0 0 chr3 73779718 73779790 -85819993 + (TG)n Simple_repeat Simple_repeat 2 73 0 4 1147 444 284 9 18 chr3 73779896 73779909 -85819874 + B1_Mus1 SINE Alu 32 45 -103 4 1147 2428 87 26 3 chr3 73779909 73780255 -85819528 - L1_Mus2 LINE L1 0 6566 6213 4 1147 444 284 9 18 chr3 73780255 73780352 -85819431 + B1_Mus1 SINE Alu 46 141 -7 4 1147 285 98 0 0 chr3 73780357 73780398 -85819385 + (GGA)n Simple_repeat Simple_repeat 2 42 0 4 1147 29 0 0 0 chr3 73780620 73780649 -85819134 + AT_rich Low_complexity Low_complexity 1 29 0 4 1147 4469 71 2 2 chr3 73780672 73781252 -85818531 - L1Md_F2 LINE L1 -14 6568 5989 4 1147 409 258 116 0 chr3 73781474 73781629 -85818154 - Lx2B LINE L1 -32 6968 6796 4 1147 456 312 65 7 chr3 73781629 73781768 -85818015 - B3A SINE B2 -50 148 2 4 1147 237 83 0 0 chr3 73782264 73782300 -85817483 + (TTTTG)n Simple_repeat Simple_repeat 5 40 0 4 1147 449 265 10 0 chr3 73782539 73782641 -85817142 + Lx9 LINE L1 7264 7366 -278 4 1147 414 85 0 0 chr3 73782696 73782755 -85817028 + (CA)n Simple_repeat Simple_repeat 1 59 0 4 1147 1955 158 9 0 chr3 73782802 73783124 -85816659 + ORR1A2 LTR MaLR 3 327 0 4 1147 34 0 0 0 chr3 73783213 73783247 -85816536 + AT_rich Low_complexity Low_complexity 1 34 0 4 1147 263 192 12 37 chr3 73783399 73783480 -85816303 + Lx4B LINE L1 6963 7041 -17 4 1147 216 67 0 0 chr3 73783523 73783553 -85816230 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 4 1147 3317 149 109 16 chr3 73783553 73784174 -85815609 + Lx LINE L1 5975 6653 -1 4 1147 21 36 0 0 chr3 73784988 73785016 -85814767 + AT_rich Low_complexity Low_complexity 1 28 0 4 1147 499 312 101 0 chr3 73786313 73786451 -85813332 - B3A SINE B2 -35 163 12 4 1147 331 21 0 40 chr3 73786556 73786606 -85813177 + (GTTTG)n Simple_repeat Simple_repeat 2 49 0 4 1147 1135 75 0 7 chr3 73786606 73786743 -85813040 - B1_Mus2 SINE Alu -9 138 2 4 1147 399 68 0 0 chr3 73787390 73787449 -85812334 + (TCTCTG)n Simple_repeat Simple_repeat 2 60 0 4 1147 263 28 0 27 chr3 73787450 73787487 -85812296 + (TGGGGG)n Simple_repeat Simple_repeat 1 36 0 4 1147 369 62 0 0 chr3 73787591 73787639 -85812144 + (TTTA)n Simple_repeat Simple_repeat 3 50 0 4 1147 3691 215 33 19 chr3 73787879 73787972 -85811811 + Lx5 LINE L1 4529 4622 -1255 4 1147 186 43 0 0 chr3 73787972 73787995 -85811788 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 4 1147 3691 215 33 19 chr3 73787995 73788841 -85810942 + Lx5 LINE L1 4623 5481 -396 4 1147 2054 129 61 6 chr3 73788836 73789180 -85810603 - Lx LINE L1 -111 6543 6181 4 1147 713 141 0 8 chr3 73789180 73789309 -85810474 + Lx LINE L1 6516 6643 -11 4 1147 1079 83 14 0 chr3 73789309 73789454 -85810329 + B1_Mm SINE Alu 1 147 0 4 1147 354 61 0 0 chr3 73789527 73789576 -85810207 + (GAAA)n Simple_repeat Simple_repeat 4 52 0 4 1147 5354 228 53 16 chr3 73789642 73791089 -85808694 + Lx5 LINE L1 5494 7003 -47 4 1147 37 0 0 0 chr3 73791108 73791145 -85808638 + AT_rich Low_complexity Low_complexity 1 37 0 4 1147 509 309 44 22 chr3 73792957 73793139 -85806644 - B3A SINE B2 -3 195 10 4 1147 216 0 0 0 chr3 73793273 73793297 -85806486 + (T)n Simple_repeat Simple_repeat 1 24 0 4 1148 291 140 0 0 chr3 73795957 73796007 -85803776 + (T)n Simple_repeat Simple_repeat 1 50 0 4 1148 1875 216 100 43 chr3 73796312 73796844 -85802939 + RMER2 LTR ERV1 1 562 -5 4 1148 1117 173 162 44 chr3 73797289 73797585 -85802198 + RLTR12A LTR ERVK 1 331 -237 4 1148 660 84 0 0 chr3 73797585 73797668 -85802115 + L1Md_F2 LINE L1 5503 5585 -298 4 1148 7302 73 18 5 chr3 73797669 73798651 -85801132 + L1Md_F2 LINE L1 5587 6581 -1 4 1148 3704 94 2 2 chr3 73798662 73799174 -85800609 + L1Md_F2 LINE L1 5074 5585 -298 4 1148 7508 70 0 8 chr3 73799176 73800167 -85799616 + L1Md_F2 LINE L1 5588 6570 -12 4 1148 1040 201 16 63 chr3 73800171 73800426 -85799357 + RLTR12A LTR ERVK 288 530 -38 4 1148 31 0 0 0 chr3 73800484 73800515 -85799268 + AT_rich Low_complexity Low_complexity 1 31 0 4 1148 238 164 0 32 chr3 73800956 73801019 -85798764 + CT-rich Low_complexity Low_complexity 1 61 0 4 1148 255 133 0 0 chr3 73801019 73801064 -85798719 + (TG)n Simple_repeat Simple_repeat 2 46 0 4 1148 660 340 81 20 chr3 73801145 73801391 -85798392 - B4A SINE B4 -18 274 14 4 1148 2025 100 3 3 chr3 73802104 73802394 -85797389 + L1_Mus2 LINE L1 6277 6566 0 4 1148 558 0 0 0 chr3 73802476 73802538 -85797245 + (TC)n Simple_repeat Simple_repeat 1 62 0 4 1148 738 127 4 14 chr3 73803252 73803388 -85796395 + RMER17D2 LTR ERVK 1 134 -772 4 1148 314 271 129 34 chr3 73803360 73803541 -85796242 + MTD LTR MaLR 168 405 -14 4 1148 279 0 0 0 chr3 73803654 73803685 -85796098 + (TAAA)n Simple_repeat Simple_repeat 1 31 0 4 1148 24 53 0 0 chr3 73804177 73804215 -85795568 + AT_rich Low_complexity Low_complexity 1 38 0 4 1148 330 67 0 0 chr3 73804444 73804489 -85795294 + (CAAAT)n Simple_repeat Simple_repeat 2 46 0 4 1148 1404 315 24 30 chr3 73804626 73805711 -85794072 + RMER1A Other Other 1 540 -526 4 1148 503 329 34 14 chr3 73805953 73806101 -85793682 + B3A SINE B2 1 151 -47 4 1148 472 53 13 13 chr3 73806129 73806206 -85793577 + (TC)n Simple_repeat Simple_repeat 2 78 0 4 1148 1493 222 79 3 chr3 73806260 73806576 -85793207 + ORR1B2 LTR MaLR 28 367 0 4 1148 49 18 0 0 chr3 73806580 73806636 -85793147 + AT_rich Low_complexity Low_complexity 1 56 0 4 1148 37 52 0 0 chr3 73806702 73806760 -85793023 + AT_rich Low_complexity Low_complexity 1 58 0 4 1148 408 20 0 0 chr3 73809763 73809812 -85789971 + (GA)n Simple_repeat Simple_repeat 1 49 0 4 1148 296 316 0 0 chr3 73810075 73810154 -85789629 - ID4 SINE ID -4 79 1 4 1148 21 0 0 0 chr3 73810340 73810361 -85789422 + AT_rich Low_complexity Low_complexity 1 21 0 4 1148 26 82 0 0 chr3 73810406 73810467 -85789316 + AT_rich Low_complexity Low_complexity 1 61 0 4 1148 25 31 0 0 chr3 73810886 73810918 -85788865 + AT_rich Low_complexity Low_complexity 1 32 0 4 1148 1333 259 19 11 chr3 73810965 73811336 -85788447 - ORR1D1 LTR MaLR 0 374 1 4 1148 22 70 0 0 chr3 73811711 73811754 -85788029 + AT_rich Low_complexity Low_complexity 1 43 0 4 1148 233 386 69 0 chr3 73811786 73811887 -85787896 - ID_B1 SINE B4 -26 198 91 4 1148 1094 102 0 0 chr3 73812439 73812586 -85787197 + B1_Mus1 SINE Alu 2 148 0 4 1148 414 67 40 0 chr3 73812586 73812661 -85787122 + (CAAAA)n Simple_repeat Simple_repeat 3 80 0 4 1148 204 88 0 56 chr3 73812884 73812899 -85786884 + (A)n Simple_repeat Simple_repeat 1 15 0 5 1148 1714 15 0 0 chr3 73812899 73813120 -85786663 + L1Md_A LINE L1 6380 6582 0 5 1148 2579 173 21 32 chr3 73813282 73813774 -85786009 - RLTR33 LTR ERVK -223 455 1 5 1148 660 235 291 48 chr3 73814284 73814641 -85785142 - RMER6B LTR ERVK 0 461 18 5 1148 307 241 61 37 chr3 73814630 73814712 -85785071 - RMER6A LTR ERVK -664 92 9 5 1148 6928 166 84 46 chr3 73814748 73815502 -85784281 - MYSERV6-int LTR ERVK -271 8688 7969 5 1148 5492 139 2 8 chr3 73815502 73816377 -85783406 - Lx2 LINE L1 0 6997 6128 5 1148 6928 166 84 46 chr3 73816377 73817142 -85782641 - MYSERV6-int LTR ERVK -991 7968 7110 5 1148 327 49 0 0 chr3 73817142 73817183 -85782600 + (TA)n Simple_repeat Simple_repeat 2 42 0 5 1148 6928 166 84 46 chr3 73817183 73817219 -85782564 - MYSERV6-int LTR ERVK -1850 7109 7073 5 1148 918 144 12 9 chr3 73817222 73817391 -85782392 - Lx2 LINE L1 -504 6493 6325 5 1148 404 181 0 0 chr3 73817391 73817463 -85782320 - MYSERV6-int LTR ERVK -1922 7037 6966 5 1148 420 171 0 0 chr3 73817454 73817524 -85782259 - MYSERV6-int LTR ERVK -2141 6818 6749 5 1148 321 125 0 0 chr3 73817524 73817572 -85782211 + RMER2 LTR ERV1 2 49 -518 5 1148 482 285 95 18 chr3 73817558 73817726 -85782057 + RMER2 LTR ERV1 387 567 0 5 1148 1168 145 156 34 chr3 73817726 73818093 -85781690 - MYSERV6-int LTR ERVK -2206 6753 6342 5 1148 269 200 0 18 chr3 73818093 73818149 -85781634 - B1_Mus1 SINE Alu -91 57 3 5 1148 542 222 63 197 chr3 73818149 73818401 -85781382 - RMER6B LTR ERVK -245 216 1 5 1148 1288 235 99 30 chr3 73819023 73819387 -85780396 + MTD LTR MaLR 24 412 -7 5 1148 198 143 0 0 chr3 73820010 73820045 -85779738 + (TTGG)n Simple_repeat Simple_repeat 1 35 0 5 1148 2768 88 34 0 chr3 73820277 73820664 -85779119 - MTB LTR MaLR 0 400 1 5 1148 4666 121 45 86 chr3 73820664 73821569 -85778214 - MTB-int LTR MaLR 0 1098 231 5 1148 1881 150 3 0 chr3 73821568 73821868 -85777915 - MTB LTR MaLR -99 301 1 5 1148 579 310 15 100 chr3 73821882 73822151 -85777632 + RLTR11B LTR ERVK 68 313 -140 5 1148 247 113 32 0 chr3 73822151 73822213 -85777570 + (CAAA)n Simple_repeat Simple_repeat 4 67 0 5 1148 655 158 26 0 chr3 73822363 73822477 -85777306 + B2_Mm2 SINE B2 78 194 -1 5 1148 448 244 13 13 chr3 73822722 73822880 -85776903 + (TATATG)n Simple_repeat Simple_repeat 4 161 0 5 1148 2926 117 5 5 chr3 73822931 73823377 -85776406 + L1_Mus3 LINE L1 6190 6635 -3 5 1148 28 48 0 0 chr3 73823957 73823999 -85775784 + AT_rich Low_complexity Low_complexity 1 42 0 5 1148 22 80 0 0 chr3 73824081 73824131 -85775652 + AT_rich Low_complexity Low_complexity 1 50 0 5 1148 310 281 66 8 chr3 73824237 73824359 -85775424 + L1M4c LINE L1 545 673 -5934 5 1148 1966 242 38 9 chr3 73824380 73824830 -85774953 + RMER5 LTR ERV1 21 483 -51 5 1148 449 234 31 0 chr3 73824834 73824962 -85774821 + Lx9 LINE L1 7505 7636 -8 5 1148 322 271 121 68 chr3 73825130 73825411 -85774372 + L1M4c LINE L1 1360 1655 -5094 5 1148 2216 156 48 2 chr3 73826222 73826641 -85773142 - L1_Mur2 LINE L1 -1113 4764 4327 5 1148 306 230 53 0 chr3 73826648 73826761 -85773022 + L1MA7 LINE L1 6073 6191 -100 5 1148 2395 64 21 0 chr3 73826762 73827090 -85772693 - L1Md_F3 LINE L1 0 6582 6248 5 1148 9616 55 2 4 chr3 73827092 73828418 -85771365 - L1Md_F3 LINE L1 -632 5952 4629 5 1148 4724 203 129 46 chr3 73828418 73829257 -85770526 + L1_Mm LINE L1 4060 4908 -975 5 1148 2992 32 0 0 chr3 73829257 73829603 -85770180 + ORR1A0 LTR MaLR 1 346 0 5 1148 4724 203 129 46 chr3 73829603 73830099 -85769684 + L1_Mm LINE L1 4909 5535 -348 5 1148 5997 6 0 0 chr3 73830099 73830765 -85769018 - L1Md_T LINE L1 0 6582 5917 5 1148 4724 203 129 46 chr3 73830765 73831113 -85768670 + L1_Mm LINE L1 5536 5883 0 5 1148 1854 220 34 29 chr3 73831354 73831771 -85768012 - MTC LTR MaLR 0 421 3 5 1148 5418 126 28 10 chr3 73832133 73833006 -85766777 - Lx2 LINE L1 0 6997 6110 5 1148 2143 176 190 42 chr3 73833363 73833963 -85765820 + RMER6C LTR ERVK 1 689 -1 5 1148 9000 8 0 0 chr3 73834917 73836267 -85763516 - L1Md_T LINE L1 0 6582 5267 5 1148 1100 111 6 0 chr3 73837395 73837566 -85762217 - Lx2 LINE L1 -1 6996 6825 5 1148 264 362 0 103 chr3 73837862 73837979 -85761804 + RSINE1 SINE B4 4 108 -57 5 1148 22 0 0 0 chr3 73838140 73838162 -85761621 + AT_rich Low_complexity Low_complexity 1 22 0 5 1148 2613 176 34 2 chr3 73838901 73839398 -85760385 - Lx LINE L1 -6 6648 6136 5 1148 747 293 95 0 chr3 73839438 73839660 -85760123 + MER70A LTR ERVL 230 472 0 5 1148 1006 271 77 26 chr3 73840260 73840609 -85759174 + ORR1D2 LTR MaLR 1 367 -3 5 1148 186 225 0 91 chr3 73840860 73840904 -85758879 + MIRm SINE MIR 11 50 -226 5 1148 3393 259 45 41 chr3 73841070 73842525 -85757258 + RMER1A Other Other 7 1029 -1 5 1148 1169 370 100 44 chr3 73844000 73844847 -85754936 + MTEa-int LTR MaLR 684 1578 -2 5 1148 651 369 78 30 chr3 73844854 73845044 -85754739 + MTEa LTR MaLR 7 196 -183 5 1148 486 0 0 0 chr3 73845044 73845098 -85754685 + (TC)n Simple_repeat Simple_repeat 1 54 0 5 1148 651 369 78 30 chr3 73845098 73845242 -85754541 + MTEa LTR MaLR 197 357 -22 5 1148 264 273 206 43 chr3 73845225 73845317 -85754466 + RSINE1 SINE B4 30 136 -29 5 1148 822 97 14 7 chr3 73845528 73845673 -85754110 + (GAAA)n Simple_repeat Simple_repeat 2 147 0 5 1148 929 99 14 0 chr3 73845700 73845842 -85753941 + (GGAA)n Simple_repeat Simple_repeat 3 146 0 5 1148 225 274 40 64 chr3 73845852 73845977 -85753806 + Lx8 LINE L1 7343 7464 -9 5 1148 21 71 0 0 chr3 73845985 73846027 -85753756 + AT_rich Low_complexity Low_complexity 1 42 0 5 1148 288 102 0 0 chr3 73846756 73846805 -85752978 + (TG)n Simple_repeat Simple_repeat 2 50 0 5 1148 22 35 0 0 chr3 73847159 73847188 -85752595 + AT_rich Low_complexity Low_complexity 1 29 0 5 1148 1892 173 10 0 chr3 73847239 73847545 -85752238 - RLTR27 LTR ERVK 0 309 1 5 1148 25 65 0 0 chr3 73848068 73848114 -85751669 + AT_rich Low_complexity Low_complexity 1 46 0 5 1148 227 270 32 0 chr3 73848680 73848743 -85751040 - Kanga1 DNA Tc2 -1128 617 553 5 1148 278 26 26 0 chr3 73848762 73848801 -85750982 + (TTTTG)n Simple_repeat Simple_repeat 2 41 0 5 1148 189 0 0 0 chr3 73848804 73848825 -85750958 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 5 1148 270 0 0 0 chr3 73848912 73848942 -85750841 + (A)n Simple_repeat Simple_repeat 1 30 0 5 1148 204 232 49 0 chr3 73850064 73850146 -85749637 + (TATAA)n Simple_repeat Simple_repeat 3 88 0 5 1148 321 333 34 41 chr3 73851118 73851265 -85748518 - B1F SINE Alu -1 148 3 5 1148 929 273 127 3 chr3 73851969 73852292 -85747491 - MTD LTR MaLR -14 405 43 5 1148 481 341 101 28 chr3 73852667 73852993 -85746790 - RLTR23 LTR ERV1 0 430 81 5 1148 448 250 0 11 chr3 73853068 73853161 -85746622 - RLTR23 LTR ERV1 -331 99 8 5 1148 22 56 0 0 chr3 73853245 73853281 -85746502 + AT_rich Low_complexity Low_complexity 1 36 0 5 1148 579 265 0 75 chr3 73853314 73853344 -85746439 - B1_Mur1 SINE Alu -1 148 127 5 1148 2150 142 59 48 chr3 73853344 73853765 -85746018 + RLTR23 LTR ERV1 1 426 -4 5 1148 579 265 0 75 chr3 73853765 73853893 -85745890 - B1_Mur1 SINE Alu -23 126 2 5 1148 362 303 13 27 chr3 73854833 73854982 -85744801 + CT-rich Low_complexity Low_complexity 2 148 0 5 1148 28 0 0 0 chr3 73855263 73855291 -85744492 + AT_rich Low_complexity Low_complexity 1 28 0 5 1148 229 270 0 0 chr3 73855567 73855641 -85744142 + A-rich Low_complexity Low_complexity 1 74 0 5 1148 32 43 0 0 chr3 73855680 73855726 -85744057 + AT_rich Low_complexity Low_complexity 1 46 0 5 1148 666 338 45 0 chr3 73855885 73856086 -85743697 - ID_B1 SINE B4 0 224 15 5 1148 24 0 0 0 chr3 73856089 73856113 -85743670 + AT_rich Low_complexity Low_complexity 1 24 0 5 1148 23 0 0 0 chr3 73856353 73856376 -85743407 + AT_rich Low_complexity Low_complexity 1 23 0 5 1148 28 61 0 0 chr3 73857832 73857881 -85741902 + AT_rich Low_complexity Low_complexity 1 49 0 5 1148 420 20 0 0 chr3 73857960 73858009 -85741774 + (TG)n Simple_repeat Simple_repeat 2 50 0 5 1148 1093 62 0 40 chr3 73858360 73858512 -85741271 + B1_Mm SINE Alu 1 146 -1 5 1148 365 345 52 33 chr3 73858552 73858762 -85741021 - L1MEg LINE L1 -4865 1219 1006 5 1148 6464 67 16 6 chr3 73858802 73859660 -85740123 + L1Md_F2 LINE L1 5703 6569 -13 5 1148 1400 135 21 8 chr3 73859661 73859900 -85739883 - Lx2 LINE L1 -1005 5992 5751 5 1148 1215 161 37 205 chr3 73859902 73860253 -85739530 + RLTR41 LTR ERV1 1 292 -154 5 1148 997 145 6 39 chr3 73860256 73860435 -85739348 + B2_Mm1t SINE B2 5 177 -16 5 1148 235 49 49 0 chr3 73860437 73860478 -85739305 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 5 1148 608 25 0 92 chr3 73860565 73860652 -85739131 - Lx2A1 LINE L1 -1256 5752 5674 5 1148 1424 278 23 66 chr3 73861110 73861253 -85738530 - Lx6 LINE L1 -11 7449 7317 5 1148 225 0 0 0 chr3 73861253 73861278 -85738505 + (CAA)n Simple_repeat Simple_repeat 2 26 0 5 1148 1424 296 24 70 chr3 73861278 73861784 -85737999 - Lx6 LINE L1 -144 7316 6448 5 1148 1173 186 7 44 chr3 73861785 73862055 -85737728 + L1_Mur2 LINE L1 5038 5297 -580 5 1148 5677 189 71 4 chr3 73862071 73863044 -85736739 + L1_Mur1 LINE L1 30 1080 -5904 5 1148 2999 51 74 21 chr3 73863044 73863463 -85736320 + L1Md_F2 LINE L1 6142 6582 0 5 1148 11289 139 146 117 chr3 73863463 73865542 -85734241 + L1_Mur1 LINE L1 1081 3924 -1962 5 1148 3425 43 5 0 chr3 73865542 73865961 -85733822 + L1Md_F3 LINE L1 6162 6582 -2 5 1148 11289 111 97 130 chr3 73865961 73866430 -85733353 + L1_Mur1 LINE L1 3925 4285 -1601 5 1148 276 53 0 0 chr3 73866430 73866468 -85733315 + (CAAAA)n Simple_repeat Simple_repeat 2 39 0 5 1148 11289 111 97 130 chr3 73866468 73866837 -85732946 + L1_Mur1 LINE L1 4286 4471 -1415 5 1148 6978 66 57 15 chr3 73866837 73867791 -85731992 + L1Md_F2 LINE L1 5588 6581 -1 5 1148 11289 111 97 130 chr3 73867791 73867961 -85731822 + L1_Mur1 LINE L1 4472 4635 -1251 5 1148 306 0 0 0 chr3 73867961 73867995 -85731788 + (CTAA)n Simple_repeat Simple_repeat 3 36 0 5 1148 11289 111 97 130 chr3 73867995 73868361 -85731422 + L1_Mur1 LINE L1 4636 4991 -895 5 1148 3268 196 49 56 chr3 73868361 73869197 -85730586 + MYSERV16_I-int LTR ERVK 104 933 -1393 5 1148 5901 158 46 21 chr3 73869202 73870431 -85729352 + MYSERV16_I-int LTR ERVK 1067 2326 0 5 1148 2454 186 38 38 chr3 73870439 73870970 -85728813 + RLTR20A LTR ERVK 11 541 0 5 1148 613 325 43 0 chr3 73871056 73871290 -85728493 + Lx6 LINE L1 6508 6751 -709 5 1148 8702 14 1 0 chr3 73872417 73873965 -85725818 - L1Md_A LINE L1 -1 6581 5033 5 1148 238 31 0 0 chr3 73873965 73873997 -85725786 + L1Md_A LINE L1 5010 5041 -842 5 1148 204 284 99 0 chr3 73874490 73874571 -85725212 + MIRc SINE MIR 103 191 -77 5 1148 225 0 0 0 chr3 73875395 73875420 -85724363 + (TTTTA)n Simple_repeat Simple_repeat 1 25 0 5 1148 268 355 58 29 chr3 73875476 73875615 -85724168 - B1F1 SINE Alu 0 149 7 5 1148 46 62 0 0 chr3 73877348 73877429 -85722354 + AT_rich Low_complexity Low_complexity 1 81 0 5 1148 27 0 0 0 chr3 73877506 73877533 -85722250 + AT_rich Low_complexity Low_complexity 1 27 0 5 1148 205 152 0 0 chr3 73877713 73877746 -85722037 + CT-rich Low_complexity Low_complexity 2 34 0 6 1148 351 169 0 0 chr3 73877770 73877841 -85721942 + CT-rich Low_complexity Low_complexity 2 72 0 6 1148 1181 224 106 3 chr3 73878250 73878590 -85721193 - Lx9 LINE L1 -8 7636 7262 6 1148 380 310 38 23 chr3 73878602 73878734 -85721049 - B3 SINE B2 -7 209 76 6 1148 314 135 0 0 chr3 73878743 73878795 -85720988 + Lx3B LINE L1 6919 6970 -3 6 1148 2267 254 45 75 chr3 73879403 73880378 -85719405 - RMER17B LTR ERVK -43 915 1 6 1148 210 208 0 0 chr3 73880400 73880448 -85719335 + A-rich Low_complexity Low_complexity 1 48 0 6 1148 198 143 0 0 chr3 73880529 73880564 -85719219 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 6 1148 27 49 0 0 chr3 73880775 73880816 -85718967 + AT_rich Low_complexity Low_complexity 1 41 0 6 1148 22 35 0 0 chr3 73881125 73881154 -85718629 + AT_rich Low_complexity Low_complexity 1 29 0 6 1148 758 238 66 14 chr3 73881881 73882085 -85717698 - ORR1C2 LTR MaLR 0 384 113 6 1148 239 54 27 0 chr3 73882217 73882254 -85717529 + (TTTTTG)n Simple_repeat Simple_repeat 6 43 0 6 1148 835 329 90 63 chr3 73882517 73883321 -85716462 + Charlie1a DNA MER1_type 109 933 -522 6 1148 357 82 0 0 chr3 73883418 73883467 -85716316 + (CA)n Simple_repeat Simple_repeat 1 49 0 6 1148 3667 58 20 10 chr3 73884845 73885336 -85714447 - LTRIS2 LTR ERV1 0 564 69 6 1148 278 141 28 0 chr3 73886061 73886132 -85713651 + (TCTCTG)n Simple_repeat Simple_repeat 4 76 0 6 1148 21 57 0 0 chr3 73887337 73887372 -85712411 + AT_rich Low_complexity Low_complexity 1 35 0 6 1148 240 331 74 8 chr3 73887406 73887528 -85712255 - MIR SINE MIR -80 182 53 6 1148 276 368 45 74 chr3 73887662 73887838 -85711945 + B4A SINE B4 2 172 -120 6 1148 246 136 0 0 chr3 73888045 73888089 -85711694 + (T)n Simple_repeat Simple_repeat 1 44 0 6 1148 195 69 0 0 chr3 73888506 73888535 -85711248 + (TTTTTG)n Simple_repeat Simple_repeat 3 31 0 6 1148 31 0 0 0 chr3 73890080 73890111 -85709672 + AT_rich Low_complexity Low_complexity 1 31 0 6 1148 288 53 0 0 chr3 73890177 73890215 -85709568 + (TC)n Simple_repeat Simple_repeat 1 38 0 6 1148 201 39 0 0 chr3 73890230 73890256 -85709527 + (CAA)n Simple_repeat Simple_repeat 2 27 0 6 1148 529 271 47 47 chr3 73890274 73890506 -85709277 - Lx7 LINE L1 -328 7368 7137 6 1148 189 362 17 0 chr3 73890589 73890647 -85709136 - MIRc SINE MIR -119 149 91 6 1148 1102 89 0 7 chr3 73890752 73890899 -85708884 - B1_Mm SINE Alu 0 147 2 6 1148 1259 136 42 0 chr3 73890953 73891167 -85708616 - Lx2 LINE L1 0 6997 6775 6 1148 2249 101 3 0 chr3 73891167 73891485 -85708298 - Lx2 LINE L1 -354 6643 6325 6 1148 1072 86 0 0 chr3 73891729 73891868 -85707915 + B1_Mm SINE Alu 1 139 -8 6 1148 186 43 0 0 chr3 73891873 73891896 -85707887 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 6 1148 39 38 0 0 chr3 73892149 73892202 -85707581 + AT_rich Low_complexity Low_complexity 1 53 0 6 1148 1094 239 136 3 chr3 73892330 73892653 -85707130 + ORR1D1 LTR MaLR 1 366 -8 6 1148 280 280 0 21 chr3 73893120 73893215 -85706568 + CT-rich Low_complexity Low_complexity 2 94 0 6 1148 21 0 0 0 chr3 73894153 73894174 -85705609 + AT_rich Low_complexity Low_complexity 1 21 0 6 1148 26 30 0 0 chr3 73894722 73894755 -85705028 + AT_rich Low_complexity Low_complexity 1 33 0 6 1148 320 319 21 21 chr3 73895210 73895306 -85704477 + Lx9 LINE L1 6389 6484 -1160 6 1148 814 352 21 63 chr3 73895312 73895918 -85703865 + Lx9 LINE L1 6637 7217 -427 6 1148 400 316 26 0 chr3 73896028 73896142 -85703641 - B1F SINE Alu 0 149 33 6 1148 209 213 0 0 chr3 73896192 73896239 -85703544 + T-rich Low_complexity Low_complexity 1 47 0 6 1148 22 56 0 0 chr3 73896716 73896752 -85703031 + AT_rich Low_complexity Low_complexity 1 36 0 6 1148 337 338 72 50 chr3 73897777 73897998 -85701785 + MLT1B LTR MaLR 1 226 -164 6 1148 629 325 55 92 chr3 73898118 73898389 -85701394 + B4A SINE B4 28 288 -4 6 1148 186 103 0 0 chr3 73898665 73898694 -85701089 + (T)n Simple_repeat Simple_repeat 1 29 0 6 1148 3302 139 44 31 chr3 73898709 73899297 -85700486 - Lx3B LINE L1 -3 6970 6375 6 1148 276 100 0 0 chr3 73899350 73899390 -85700393 + (CACCAT)n Simple_repeat Simple_repeat 5 44 0 6 1148 531 0 0 0 chr3 73899391 73899450 -85700333 + (TC)n Simple_repeat Simple_repeat 2 60 0 6 1148 261 0 0 0 chr3 73899450 73899478 -85700305 + (TG)n Simple_repeat Simple_repeat 2 30 0 6 1148 589 335 24 0 chr3 73899497 73899661 -85700122 - B3A SINE B2 -30 168 1 6 1148 21 36 0 0 chr3 73901142 73901170 -85698613 + AT_rich Low_complexity Low_complexity 1 28 0 6 1148 2721 127 14 25 chr3 73901357 73901802 -85697981 - Lx LINE L1 -9 6645 6206 6 1148 628 238 0 0 chr3 73901969 73902091 -85697692 - Lx9 LINE L1 -409 7235 7114 6 1148 35 71 0 0 chr3 73902930 73903000 -85696783 + AT_rich Low_complexity Low_complexity 1 70 0 6 1148 456 19 0 0 chr3 73903441 73903494 -85696289 + (CA)n Simple_repeat Simple_repeat 2 54 0 6 1148 2446 207 29 18 chr3 73903693 73904202 -85695581 + RLTR20D LTR ERVK 7 568 0 6 1148 365 139 0 40 chr3 73905011 73905086 -85694697 + B1_Mus2 SINE Alu 76 147 0 6 1148 212 59 29 0 chr3 73905171 73905205 -85694578 + (CAA)n Simple_repeat Simple_repeat 1 35 0 6 1148 3084 94 70 2 chr3 73905492 73905948 -85693835 - L1Md_F2 LINE L1 -1 6581 6095 6 1148 1924 63 8 0 chr3 73905950 73906202 -85693581 + L1Md_F2 LINE L1 5833 6086 -496 6 1148 288 0 0 0 chr3 73907738 73907770 -85692013 + (TG)n Simple_repeat Simple_repeat 1 32 0 6 1148 625 365 24 55 chr3 73907815 73908108 -85691675 - B4A SINE B4 -4 288 5 6 1148 310 232 56 34 chr3 73908334 73908423 -85691360 + Lx9 LINE L1 7103 7193 -451 6 1148 252 22 67 0 chr3 73908816 73908861 -85690922 + (TTG)n Simple_repeat Simple_repeat 2 49 0 6 1148 561 74 0 24 chr3 73908861 73908935 -85690848 - B1_Mus2 SINE Alu -9 138 66 6 1148 257 241 0 126 chr3 73910384 73910479 -85689304 + MT2B2 LTR ERVL 152 234 -350 6 1148 469 260 29 0 chr3 73910405 73910509 -85689274 + PB1D9 SINE Alu 6 112 -8 6 1148 30 27 0 0 chr3 73910544 73910581 -85689202 + AT_rich Low_complexity Low_complexity 1 37 0 6 1148 388 311 16 16 chr3 73911727 73911848 -85687935 + MTE2b LTR MaLR 1 121 -258 6 1148 290 356 119 10 chr3 73911848 73911920 -85687863 + MT2A LTR ERVL 1 214 -319 6 1148 246 205 12 24 chr3 73912028 73912113 -85687670 + (CATA)n Simple_repeat Simple_repeat 3 86 0 6 1148 231 225 28 0 chr3 73912113 73912184 -85687599 + MLT2B5 LTR ERVL 477 549 -6 6 1148 28 29 0 0 chr3 73912936 73912971 -85686812 + AT_rich Low_complexity Low_complexity 1 35 0 6 1148 437 348 43 0 chr3 73913610 73913748 -85686035 + MER2B DNA MER2_type 181 324 -12 6 1148 321 272 28 140 chr3 73913956 73914170 -85685613 + RMER12 LTR ERVK 676 865 -457 6 1148 212 369 39 47 chr3 73915067 73915195 -85684588 + B3 SINE B2 18 144 -72 6 1148 273 98 0 0 chr3 73915212 73915253 -85684530 + (CA)n Simple_repeat Simple_repeat 2 42 0 6 1148 620 245 0 33 chr3 73915295 73915447 -85684336 + B1_Mus1 SINE Alu 2 148 0 6 1148 1193 236 33 33 chr3 73915527 73915646 -85684137 - Lx LINE L1 -3 6997 6880 6 1148 215 31 31 0 chr3 73915646 73915678 -85684105 + (CA)n Simple_repeat Simple_repeat 2 34 0 6 1148 1934 223 82 37 chr3 73915678 73916020 -85683763 - Lx LINE L1 -121 6879 6520 6 1148 207 0 0 0 chr3 73916020 73916043 -85683740 + (CCCA)n Simple_repeat Simple_repeat 2 24 0 6 1148 1934 197 176 29 chr3 73916043 73916475 -85683308 - Lx LINE L1 -135 6519 6024 6 1148 5491 226 67 13 chr3 73916497 73917837 -85681946 + Lx5 LINE L1 5639 7050 0 6 1148 255 331 62 31 chr3 73917868 73917996 -85681787 + B1F SINE Alu 10 141 -8 6 1148 1056 31 0 0 chr3 73918784 73918914 -85680869 + B1_Mm SINE Alu 9 138 -9 6 1148 218 183 180 16 chr3 73918962 73919023 -85680760 - ID SINE ID -151 73 3 6 1148 21 57 0 0 chr3 73919662 73919697 -85680086 + AT_rich Low_complexity Low_complexity 1 35 0 6 1148 27 49 0 0 chr3 73920003 73920044 -85679739 + AT_rich Low_complexity Low_complexity 1 41 0 6 1148 245 372 0 0 chr3 73920198 73920276 -85679507 + ID2 SINE ID 5 82 -1 6 1148 1473 84 9 82 chr3 73920675 73920907 -85678876 - L1_Mus2 LINE L1 -1 6565 6351 6 1148 1672 76 0 5 chr3 73920910 73921122 -85678661 + L1_Mus2 LINE L1 6167 6377 -189 6 1148 2120 219 62 2 chr3 73921863 73922315 -85677468 - Lx2B LINE L1 0 7000 6522 6 1148 1080 230 65 0 chr3 73922314 73922531 -85677252 + RMER1A Other Other 451 681 -349 6 1148 1017 341 30 19 chr3 73922689 73923150 -85676633 + Lx9 LINE L1 6427 6892 -752 6 1148 40 67 0 0 chr3 73923224 73923299 -85676484 + AT_rich Low_complexity Low_complexity 1 75 0 6 1148 467 343 73 34 chr3 73923327 73923451 -85676332 + B4A SINE B4 46 173 -119 6 1148 1327 195 46 23 chr3 73923451 73923802 -85675981 + RLTR15 LTR ERVK 1 359 0 6 1148 467 343 73 34 chr3 73923802 73923855 -85675928 + B4A SINE B4 174 230 -62 6 1148 243 263 145 54 chr3 73923859 73924003 -85675780 + B3 SINE B2 5 164 -29 6 1149 26 50 0 0 chr3 73925035 73925075 -85674708 + AT_rich Low_complexity Low_complexity 1 40 0 6 1149 39 0 0 0 chr3 73925648 73925687 -85674096 + AT_rich Low_complexity Low_complexity 1 39 0 6 1149 23 0 0 0 chr3 73926282 73926305 -85673478 + AT_rich Low_complexity Low_complexity 1 23 0 6 1149 563 313 81 0 chr3 73926650 73926848 -85672935 + B3 SINE B2 1 214 -2 6 1149 447 275 27 7 chr3 73926908 73927058 -85672725 + Lx6 LINE L1 7301 7453 -7 6 1149 429 20 0 0 chr3 73927667 73927717 -85672066 + (CA)n Simple_repeat Simple_repeat 1 50 0 6 1149 1085 210 5 18 chr3 73928025 73928243 -85671540 + RMER6C LTR ERVK 1 215 -475 6 1149 3716 123 7 2 chr3 73928258 73928829 -85670954 + L1_Mus3 LINE L1 6065 6638 0 6 1149 574 169 51 0 chr3 73928852 73928970 -85670813 - Lx2B LINE L1 -10 6990 6867 6 1149 2082 256 56 58 chr3 73929824 73930620 -85669163 - RMER17B LTR ERVK -168 790 1 7 1149 2279 154 27 3 chr3 73930620 73930985 -85668798 - Lx2B LINE L1 -128 6872 6499 6 1149 1700 182 132 16 chr3 73930988 73931419 -85668364 + RMER6C LTR ERVK 198 678 -12 6 1149 29 0 0 0 chr3 73931640 73931669 -85668114 + AT_rich Low_complexity Low_complexity 1 29 0 7 1149 208 130 0 53 chr3 73932000 73932057 -85667726 + (TTTA)n Simple_repeat Simple_repeat 2 55 0 7 1149 229 301 132 66 chr3 73932063 73932184 -85667599 - B4 SINE B4 -69 223 95 7 1149 559 165 16 33 chr3 73932187 73932369 -85667414 + (TA)n Simple_repeat Simple_repeat 1 179 0 7 1149 441 257 38 0 chr3 73932421 73932534 -85667249 - B3A SINE B2 -72 123 5 7 1149 232 250 60 48 chr3 73932547 73932631 -85667152 - B4 SINE B4 -206 86 2 7 1149 222 37 0 0 chr3 73932959 73932986 -85666797 + (TA)n Simple_repeat Simple_repeat 1 27 0 7 1149 1002 294 108 21 chr3 73934515 73934887 -85664896 - MTD LTR MaLR -3 416 13 7 1149 189 0 0 0 chr3 73935812 73935833 -85663950 + (A)n Simple_repeat Simple_repeat 1 21 0 7 1149 396 88 0 0 chr3 73935911 73935968 -85663815 + (TG)n Simple_repeat Simple_repeat 2 58 0 7 1149 443 309 82 4 chr3 73935985 73936280 -85663503 - L1P5 LINE L1 -583 5573 5260 7 1149 820 271 28 5 chr3 73936287 73936498 -85663285 - B3 SINE B2 0 216 1 7 1149 540 0 0 0 chr3 73936500 73936560 -85663223 + (TC)n Simple_repeat Simple_repeat 2 61 0 7 1149 12866 170 18 8 chr3 73936816 73937172 -85662611 + Lx LINE L1 2426 2785 -3098 7 1149 180 77 0 0 chr3 73937172 73937198 -85662585 + (CAA)n Simple_repeat Simple_repeat 3 28 0 7 1149 12866 170 18 8 chr3 73937198 73939135 -85660648 + Lx LINE L1 2786 4743 -1140 7 1149 189 0 0 0 chr3 73939135 73939156 -85660627 + (TA)n Simple_repeat Simple_repeat 2 22 0 7 1149 297 0 0 0 chr3 73939156 73939188 -85660595 + (TG)n Simple_repeat Simple_repeat 2 34 0 7 1149 12866 170 18 8 chr3 73939188 73939375 -85660408 + Lx LINE L1 4744 4929 -954 7 1149 1010 53 8 0 chr3 73939376 73939509 -85660274 + (TTTC)n Simple_repeat Simple_repeat 3 136 0 7 1149 235 306 20 95 chr3 73939818 73939966 -85659817 + LTR83 LTR ERVL 610 746 -34 7 1149 450 314 97 38 chr3 73940436 73940674 -85659109 + B4A SINE B4 41 292 0 7 1149 4583 198 23 9 chr3 73940708 73941021 -85658762 + Lx LINE L1 4922 5234 -649 7 1149 807 18 28 0 chr3 73941021 73941130 -85658653 + (TA)n Simple_repeat Simple_repeat 2 113 0 7 1149 6790 156 8 3 chr3 73941130 73942535 -85657248 + Lx LINE L1 5235 6652 -2 7 1149 270 345 113 18 chr3 73942939 73943222 -85656561 - L1M2 LINE L1 -1173 4970 4661 7 1149 823 246 26 13 chr3 73943261 73943492 -85656291 + RLTR12B LTR ERVK 1 234 -294 7 1149 5688 248 57 42 chr3 73943788 73946166 -85653617 - Lx5 LINE L1 -4 7046 4601 7 1149 333 0 0 0 chr3 73946166 73946203 -85653580 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 7 1149 5688 219 51 32 chr3 73946203 73946296 -85653487 - Lx5 LINE L1 -1277 4600 4518 7 1149 1820 78 62 8 chr3 73946296 73946555 -85653228 - L1Md_F2 LINE L1 -15 6567 6295 7 1149 5688 219 51 32 chr3 73946555 73946726 -85653057 - Lx5 LINE L1 -1360 4517 4353 7 1149 234 200 12 27 chr3 73947255 73947335 -85652448 - Lx5 LINE L1 -2118 3768 3682 7 1149 3657 162 40 16 chr3 73947398 73948089 -85651694 - Lx3B LINE L1 0 6973 6266 7 1149 2206 152 7 27 chr3 73948091 73948593 -85651190 + L1_Mur1 LINE L1 972 1885 -4001 7 1149 960 232 30 33 chr3 73948601 73948904 -85650879 - Lx5 LINE L1 -6497 1231 930 7 1149 571 286 73 42 chr3 73949244 73949426 -85650357 - Lx6 LINE L1 -4 7456 7271 7 1149 198 0 0 0 chr3 73949426 73949448 -85650335 + (TA)n Simple_repeat Simple_repeat 2 23 0 7 1149 189 0 0 0 chr3 73949448 73949468 -85650315 + (TG)n Simple_repeat Simple_repeat 2 22 0 7 1149 571 286 73 42 chr3 73949468 73949543 -85650240 - Lx6 LINE L1 -190 7270 7191 7 1149 246 32 0 0 chr3 73949563 73949594 -85650189 + (CA)n Simple_repeat Simple_repeat 2 32 0 7 1149 669 165 0 0 chr3 73949622 73949743 -85650040 + (TA)n Simple_repeat Simple_repeat 2 122 0 7 1149 291 203 0 0 chr3 73950504 73950573 -85649210 + (TG)n Simple_repeat Simple_repeat 2 70 0 7 1149 24 0 0 0 chr3 73950590 73950614 -85649169 + AT_rich Low_complexity Low_complexity 1 24 0 7 1149 1403 23 6 0 chr3 73952542 73952717 -85647066 + L1Md_A LINE L1 6406 6581 -1 7 1149 2311 132 6 0 chr3 73952866 73953215 -85646568 - L1_Mm LINE L1 -79 5804 5454 7 1149 4579 82 11 0 chr3 73953234 73953856 -85645927 - L1_Mus1 LINE L1 0 6567 5939 7 1149 8112 106 3 14 chr3 73953856 73954458 -85645325 + L1_Mus1 LINE L1 4700 5296 -587 7 1149 1066 78 7 0 chr3 73954458 73954599 -85645184 + B1_Mus1 SINE Alu 1 142 -6 7 1149 8112 72 3 8 chr3 73954599 73955234 -85644549 + L1_Mus1 LINE L1 5297 5924 -643 7 1149 2687 168 18 0 chr3 73955230 73955719 -85644064 - L1_Mur1 LINE L1 -421 5465 4968 7 1149 5275 127 14 5 chr3 73955719 73956547 -85643236 + L1_Mus4 LINE L1 5798 6633 -3 7 1149 453 286 22 22 chr3 73956702 73956838 -85642945 + Lx8 LINE L1 7165 7300 -173 7 1149 1079 78 7 0 chr3 73957805 73957947 -85641836 + B1_Mus1 SINE Alu 1 143 -5 7 1149 31 26 0 0 chr3 73958100 73958138 -85641645 + AT_rich Low_complexity Low_complexity 1 38 0 7 1149 474 18 0 0 chr3 73960190 73960245 -85639538 + (TTA)n Simple_repeat Simple_repeat 3 57 0 7 1149 603 222 0 0 chr3 73960245 73960362 -85639421 - B1_Mur4 SINE Alu -32 118 2 7 1149 3329 137 29 11 chr3 73960410 73960958 -85638825 + Lx3B LINE L1 6412 6969 -4 7 1149 1140 82 7 0 chr3 73961336 73961482 -85638301 + B1_Mm SINE Alu 1 147 0 7 1149 464 142 19 0 chr3 73961663 73961769 -85638014 + (TCTA)n Simple_repeat Simple_repeat 3 110 0 7 1149 27 29 0 0 chr3 73961842 73961876 -85637907 + AT_rich Low_complexity Low_complexity 1 34 0 7 1149 377 311 47 20 chr3 73962023 73962287 -85637496 - L1MB4 LINE L1 -187 5984 5707 7 1149 343 296 32 96 chr3 73962501 73962658 -85637125 - B1_Mur1 SINE Alu -2 147 1 7 1149 498 114 0 0 chr3 73962667 73962746 -85637037 + (CATA)n Simple_repeat Simple_repeat 2 80 0 7 1149 443 284 53 29 chr3 73962856 73963099 -85636684 - L1M2 LINE L1 -2355 3788 3540 7 1149 1408 141 61 16 chr3 73963613 73963911 -85635872 - L1_Mus4 LINE L1 -12 6624 6243 7 1149 351 0 0 0 chr3 73963965 73964004 -85635779 + (TAA)n Simple_repeat Simple_repeat 1 39 0 7 1149 482 27 27 13 chr3 73964531 73964606 -85635177 - L1Md_F3 LINE L1 -2 6582 6507 7 1149 2519 29 7 0 chr3 73964701 73965007 -85634776 - L1Md_F2 LINE L1 0 6582 6275 7 1149 354 288 148 5 chr3 73965015 73965112 -85634671 + L1M4 LINE L1 2674 2775 -3371 7 1149 1659 21 0 0 chr3 73965112 73965300 -85634483 + B2_Mm1t SINE B2 2 189 -4 7 1149 354 288 148 5 chr3 73965300 73965425 -85634358 + L1M4 LINE L1 2776 2927 -3219 7 1149 213 378 27 13 chr3 73966416 73966491 -85633292 + B1F SINE Alu 41 116 -33 7 1149 21 0 0 0 chr3 73966565 73966586 -85633197 + AT_rich Low_complexity Low_complexity 1 21 0 7 1149 400 324 113 0 chr3 73968176 73968318 -85631465 + Lx5 LINE L1 6195 6352 -698 7 1149 517 344 61 29 chr3 73968341 73968619 -85631164 + Lx5 LINE L1 6484 6770 -280 7 1149 345 316 115 0 chr3 73968821 73968960 -85630823 - Lx4B LINE L1 -685 6373 6219 7 1149 40 37 0 0 chr3 73970013 73970067 -85629716 + AT_rich Low_complexity Low_complexity 1 54 0 7 1149 267 114 0 0 chr3 73970223 73970267 -85629516 + (TA)n Simple_repeat Simple_repeat 1 44 0 7 1149 26 0 0 0 chr3 73970408 73970434 -85629349 + AT_rich Low_complexity Low_complexity 1 26 0 7 1149 2351 222 25 42 chr3 73970440 73971002 -85628781 - Lx4B LINE L1 -24 7034 6482 7 1149 1914 152 7 3 chr3 73971002 73971312 -85628471 - RLTR10E LTR ERVK 0 311 1 7 1149 2351 222 25 42 chr3 73971312 73971338 -85628445 - Lx4B LINE L1 -577 6481 6456 7 1149 537 143 181 0 chr3 73971338 73971443 -85628340 - Lx4A LINE L1 -541 6517 6394 7 1149 2733 97 23 55 chr3 73971443 73971913 -85627870 + L1_Mur1 LINE L1 2471 2925 -2961 7 1149 8627 83 2 7 chr3 73971885 73973104 -85626679 - L1_Mm LINE L1 -1773 4110 2898 7 1149 1937 108 10 0 chr3 73973101 73973396 -85626387 + L1_Mur1 LINE L1 3300 3597 -2289 7 1149 1714 114 68 0 chr3 73973411 73973692 -85626091 + BGLII LTR ERVK 1 300 -121 7 1149 3533 202 338 12 chr3 73973700 73974055 -85625728 + Lx3_Mus LINE L1 4265 4611 -1272 7 1149 621 0 0 0 chr3 73974055 73974124 -85625659 + (TC)n Simple_repeat Simple_repeat 2 70 0 7 1149 1001 98 0 0 chr3 73974124 73974256 -85625527 - B1_Mus1 SINE Alu -14 134 3 7 1149 6056 120 23 5 chr3 73974256 73975789 -85623994 + Lx3_Mus LINE L1 4612 6562 -447 7 1149 228 224 0 0 chr3 73975783 73975832 -85623951 + Lx7 LINE L1 7276 7324 -372 7 1149 209 270 0 13 chr3 73975896 73975971 -85623812 + (TTG)n Simple_repeat Simple_repeat 2 75 0 7 1149 294 302 17 0 chr3 73976080 73976196 -85623587 + Lx7 LINE L1 7563 7680 -16 7 1149 256 312 140 0 chr3 73976256 73976413 -85623370 + Lx8 LINE L1 6730 6908 -565 7 1149 1150 216 45 52 chr3 73976563 73976898 -85622885 + RLTR45 LTR ERVK 172 482 0 7 1149 822 68 0 0 chr3 73976898 73977001 -85622782 - L1Md_F2 LINE L1 -495 6087 5985 7 1149 278 358 0 24 chr3 73977091 73977214 -85622569 + (CA)n Simple_repeat Simple_repeat 2 121 0 7 1149 571 364 126 37 chr3 73977223 73977793 -85621990 - MLT1J-int LTR MaLR -671 716 96 7 1149 212 0 36 0 chr3 73978083 73978111 -85621672 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 7 1149 978 318 80 40 chr3 73979427 73979800 -85619983 + MTD LTR MaLR 32 419 0 7 1149 209 197 16 0 chr3 73980571 73980632 -85619151 + (TA)n Simple_repeat Simple_repeat 2 63 0 7 1149 1373 174 19 4 chr3 73980686 73980946 -85618837 + Lx LINE L1 6378 6641 -13 7 1149 26 0 0 0 chr3 73981038 73981064 -85618719 + AT_rich Low_complexity Low_complexity 1 26 0 7 1149 230 203 34 0 chr3 73982427 73982486 -85617297 + CT-rich Low_complexity Low_complexity 2 62 0 7 1149 373 19 18 18 chr3 73983103 73983158 -85616625 + (TG)n Simple_repeat Simple_repeat 1 55 0 7 1149 44 20 0 0 chr3 73983450 73983501 -85616282 + AT_rich Low_complexity Low_complexity 1 51 0 7 1149 990 82 44 0 chr3 73983506 73983641 -85616142 - B1_Mus1 SINE Alu -5 143 3 7 1149 1433 110 17 8 chr3 73983641 73983874 -85615909 - Lx3_Mus LINE L1 -7 7002 6767 7 1149 366 243 75 0 chr3 73983953 73984060 -85615723 + Lx9 LINE L1 7530 7644 0 7 1149 308 274 163 31 chr3 73984069 73984265 -85615518 - L1MD LINE L1 -546 5813 5592 7 1149 31 26 0 0 chr3 73984314 73984352 -85615431 + AT_rich Low_complexity Low_complexity 1 38 0 7 1149 3265 98 2 4 chr3 73984524 73984983 -85614800 - L1Md_F2 LINE L1 -11 6571 6114 7 1149 7498 61 26 0 chr3 73984985 73986250 -85613533 + L1Md_F2 LINE L1 4883 6167 -415 7 1149 310 311 132 75 chr3 73986298 73986684 -85613099 - L1MD LINE L1 -2722 3424 3017 7 1149 928 155 0 0 chr3 73986796 73986944 -85612839 + B1_Mus1 SINE Alu 1 148 0 7 1149 354 138 0 0 chr3 73986947 73987005 -85612778 + (TA)n Simple_repeat Simple_repeat 2 59 0 8 1149 378 351 63 40 chr3 73987006 73987356 -85612427 - L1MC LINE L1 -3335 2811 2454 8 1149 30996 74 3 87 chr3 73987954 73990440 -85609343 - L1Md_F2 LINE L1 -14 6571 4103 8 1149 2229 116 232 43 chr3 73990440 73990901 -85608882 + RLTR6_Mm LTR ERV1 37 584 -70 8 1149 30996 74 3 87 chr3 73990901 73994731 -85605052 - L1Md_F2 LINE L1 -14 4102 298 8 1149 4593 267 68 41 chr3 73995230 73995928 -85603855 + Lx7 LINE L1 6046 6772 -924 8 1149 310 0 43 22 chr3 73995928 73995974 -85603809 + (CAAAA)n Simple_repeat Simple_repeat 2 48 0 8 1149 4593 267 68 41 chr3 73995974 73996779 -85603004 + Lx7 LINE L1 6773 7589 -107 8 1149 3498 121 3 8 chr3 73996802 73997498 -85602285 - Lx3_Mus LINE L1 -957 6052 5361 8 1149 419 205 242 8 chr3 73997534 73997625 -85602158 - RMER4A LTR ERVK 0 466 362 8 1149 519 17 0 0 chr3 73997625 73997685 -85602098 + (GA)n Simple_repeat Simple_repeat 1 60 0 8 1149 419 205 242 8 chr3 73997685 73997721 -85602062 - RMER4A LTR ERVK -105 361 311 8 1149 1988 214 42 22 chr3 73997728 73998181 -85601602 - RMER4A LTR ERVK 0 466 5 8 1149 387 0 0 0 chr3 73999732 73999775 -85600008 + (TA)n Simple_repeat Simple_repeat 2 44 0 8 1149 328 335 41 53 chr3 74000218 74000388 -85599395 + MLT1E1A LTR MaLR 513 680 0 1 1149 224 30 30 0 chr3 74000407 74000440 -85599343 + (GA)n Simple_repeat Simple_repeat 2 35 0 2 1149 591 15 0 0 chr3 74000723 74000791 -85598992 + (TA)n Simple_repeat Simple_repeat 2 69 0 3 1149 2101 241 49 15 chr3 74001544 74002312 -85597471 + Lx2B LINE L1 6158 6995 -5 4 1149 859 329 60 45 chr3 74003297 74003829 -85595954 - Lx9 LINE L1 -189 7455 6916 5 1149 387 92 0 0 chr3 74003923 74003988 -85595795 + (TCTG)n Simple_repeat Simple_repeat 2 66 0 6 1149 266 330 13 106 chr3 74003994 74004221 -85595562 - B3 SINE B2 -10 206 1 7 1149 1225 128 16 0 chr3 74004285 74004473 -85595310 + L1_Mur2 LINE L1 4041 4231 -1646 8 1149 756 237 60 32 chr3 74005385 74005603 -85594180 + Lx3C LINE L1 6742 6965 -11 9 1149 24 32 0 0 chr3 74005609 74005640 -85594143 + AT_rich Low_complexity Low_complexity 1 31 0 1 1149 513 0 0 0 chr3 74005766 74005823 -85593960 + (TA)n Simple_repeat Simple_repeat 2 58 0 1 1149 21 36 0 0 chr3 74005869 74005897 -85593886 + AT_rich Low_complexity Low_complexity 1 28 0 1 1149 1042 308 52 26 chr3 74006602 74007110 -85592673 - RMER15 LTR ERVL 0 575 27 1 1149 225 0 0 0 chr3 74007284 74007309 -85592474 + (CA)n Simple_repeat Simple_repeat 1 25 0 1 1149 1111 56 7 14 chr3 74008146 74008282 -85591501 + B1_Mus1 SINE Alu 1 137 -11 1 1149 365 0 22 0 chr3 74008282 74008327 -85591456 + (CAAA)n Simple_repeat Simple_repeat 2 47 0 1 1149 180 158 0 0 chr3 74008376 74008414 -85591369 + A-rich Low_complexity Low_complexity 1 38 0 1 1149 492 18 0 0 chr3 74008423 74008480 -85591303 + (TC)n Simple_repeat Simple_repeat 2 58 0 1 1149 778 312 56 10 chr3 74009068 74009372 -85590411 - Lx8 LINE L1 -917 6556 6239 1 1149 210 37 0 0 chr3 74009459 74009486 -85590297 + (TA)n Simple_repeat Simple_repeat 2 28 0 2 1149 10142 98 3 35 chr3 74009497 74011746 -85588037 - L1_Mus1 LINE L1 -4 6563 4385 2 1149 7723 69 1 2 chr3 74011749 74012740 -85587043 + L1Md_F2 LINE L1 5588 6577 -5 2 1149 2569 123 28 0 chr3 74012740 74013137 -85586646 - L1_Mm LINE L1 -1012 4871 4464 2 1149 508 340 42 16 chr3 74013502 74013693 -85586090 + B3A SINE B2 1 196 -2 2 1149 760 152 113 54 chr3 74013782 74014004 -85585779 - Lx9 LINE L1 -1 7643 7409 2 1149 1026 201 7 17 chr3 74014611 74014842 -85584941 - L1_Mur3 LINE L1 -381 5505 5278 2 1149 863 227 57 37 chr3 74014856 74015139 -85584644 - Lx2B LINE L1 -11 6989 6703 2 1149 37968 29 0 0 chr3 74015170 74021391 -85578392 - L1Md_T LINE L1 0 6585 268 2 1149 851 170 0 52 chr3 74021408 74021582 -85578201 - Lx2B LINE L1 -11 6643 6479 2 1149 623 338 17 30 chr3 74021584 74021816 -85577967 - RMER1B Other Other -493 573 345 2 1149 653 331 86 75 chr3 74021788 74022246 -85577537 - RMER1A Other Other -473 593 100 3 1149 23 0 0 0 chr3 74022267 74022290 -85577493 + AT_rich Low_complexity Low_complexity 1 23 0 3 1149 25 65 0 0 chr3 74022713 74022759 -85577024 + AT_rich Low_complexity Low_complexity 1 46 0 3 1149 318 259 25 0 chr3 74023009 74023090 -85576693 - Lx7 LINE L1 -4 7692 7610 3 1149 427 333 52 45 chr3 74023224 74023378 -85576405 + RSINE1 SINE B4 11 165 0 3 1149 25 51 0 0 chr3 74024439 74024478 -85575305 + AT_rich Low_complexity Low_complexity 1 39 0 3 1149 2841 204 38 79 chr3 74025215 74025467 -85574316 + RLTR19B LTR ERVK 3 249 -466 3 1149 3217 152 46 34 chr3 74025467 74026059 -85573724 + Lx2 LINE L1 6398 6996 -1 3 1149 2841 204 38 79 chr3 74026059 74026550 -85573233 + RLTR19B LTR ERVK 250 715 0 3 1149 384 141 0 37 chr3 74026663 74026744 -85573039 - 4.5SRNA scRNA scRNA -1 93 16 3 1149 1434 112 18 0 chr3 74026745 74026968 -85572815 + L1_Mus3 LINE L1 6404 6630 -8 3 1149 3553 71 11 0 chr3 74027242 74027782 -85572001 - L1_Mus1 LINE L1 0 6567 6100 4 1149 2481 88 23 0 chr3 74027783 74028125 -85571658 + L1_Mus1 LINE L1 5786 6135 -432 4 1149 22 0 0 0 chr3 74028235 74028257 -85571526 + AT_rich Low_complexity Low_complexity 1 22 0 4 1149 1322 235 78 21 chr3 74028447 74028905 -85570878 + RMER19B LTR ERVK 87 616 -286 4 1149 183 80 0 0 chr3 74029312 74029337 -85570446 + (TTCC)n Simple_repeat Simple_repeat 3 27 0 4 1149 384 341 8 0 chr3 74029589 74029721 -85570062 + B1F2 SINE Alu 7 139 -10 4 1149 240 35 0 0 chr3 74029722 74029751 -85570032 + (TGAA)n Simple_repeat Simple_repeat 4 32 0 4 1149 537 133 0 0 chr3 74029831 74029929 -85569854 + (TG)n Simple_repeat Simple_repeat 1 98 0 4 1149 32 26 0 0 chr3 74030039 74030078 -85569705 + AT_rich Low_complexity Low_complexity 1 39 0 4 1149 24 53 0 0 chr3 74030175 74030213 -85569570 + AT_rich Low_complexity Low_complexity 1 38 0 4 1149 1037 313 33 10 chr3 74031347 74031650 -85568133 + MTD LTR MaLR 110 419 0 4 1149 366 238 24 12 chr3 74031655 74031740 -85568043 - Lx8 LINE L1 -1112 6361 6276 5 1149 212 236 0 0 chr3 74031789 74031844 -85567939 + A-rich Low_complexity Low_complexity 6 60 0 5 1149 421 354 68 7 chr3 74031848 74032127 -85567656 + Lx8 LINE L1 6521 6816 -657 5 1149 6099 95 7 2 chr3 74032148 74032992 -85566791 - L1_Mus1 LINE L1 0 6567 5720 5 1149 901 248 74 14 chr3 74033146 74033229 -85566554 - RLTR20A LTR ERVK -2 539 456 5 1149 429 36 0 0 chr3 74033229 74033284 -85566499 + (TC)n Simple_repeat Simple_repeat 2 56 0 5 1149 279 0 0 0 chr3 74033286 74033317 -85566466 + (CA)n Simple_repeat Simple_repeat 1 31 0 5 1149 901 248 74 14 chr3 74033317 74033447 -85566336 - RLTR20A LTR ERVK -86 455 313 5 1149 1148 180 22 0 chr3 74033854 74033931 -85565852 - L1_Mm LINE L1 -1167 4716 4637 5 1149 230 0 33 0 chr3 74033931 74033961 -85565822 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 5 1149 1148 180 22 0 chr3 74033961 74034111 -85565672 - L1_Mm LINE L1 -1247 4636 4485 5 1149 2379 127 14 3 chr3 74034109 74034479 -85565304 + L1_Mus3 LINE L1 6227 6600 -38 5 1149 7190 43 32 1 chr3 74034480 74035721 -85564062 - L1Md_F2 LINE L1 0 6582 5288 6 1149 8170 37 1 1 chr3 74035715 74037311 -85562472 - L1Md_T LINE L1 -2 6580 4985 6 1149 1321 19 0 0 chr3 74037298 74037453 -85562330 + L1_Mm LINE L1 3545 3699 -2184 6 1149 595 87 11 11 chr3 74037450 74037543 -85562240 - L1Md_F2 LINE L1 -806 5077 4985 6 1149 12309 24 2 0 chr3 74037530 74038979 -85560804 + L1Md_F2 LINE L1 3545 4996 -887 6 1149 255 53 0 10 chr3 74038975 74039029 -85560754 + L1_Mus1 LINE L1 6523 6561 -6 6 1149 318 50 0 0 chr3 74039109 74039149 -85560634 + (CA)n Simple_repeat Simple_repeat 2 41 0 6 1149 227 165 47 0 chr3 74039672 74039757 -85560026 + (TA)n Simple_repeat Simple_repeat 2 90 0 6 1149 30877 95 10 5 chr3 74039892 74045059 -85554724 + L1Md_F2 LINE L1 392 5587 -296 6 1149 6842 90 19 8 chr3 74045060 74046043 -85553740 + L1Md_F2 LINE L1 5589 6582 0 6 1149 229 264 108 83 chr3 74047974 74048094 -85551689 + MT2B LTR ERVL 1 123 -410 6 1149 1111 254 69 62 chr3 74048112 74048505 -85551278 + MT2B LTR ERVL 176 601 0 6 1149 643 226 27 16 chr3 74048506 74048690 -85551093 + MERVL_2A-int LTR ERVL 2 187 -5574 6 1149 1247 256 84 58 chr3 74048695 74049453 -85550330 + RMER6C LTR ERVK 20 720 0 6 1149 4247 218 36 17 chr3 74049459 74050424 -85549359 + MERVL_2A-int LTR ERVL 182 1165 -4596 6 1149 8114 39 7 2 chr3 74050434 74051426 -85548357 - L1Md_F3 LINE L1 -1 6583 5587 6 1149 4792 56 5 0 chr3 74051434 74052055 -85547728 + L1_Mm LINE L1 3771 4394 -1489 7 1149 1084 237 28 18 chr3 74052070 74052354 -85547429 + MERVL_2A-int LTR ERVL 1178 1464 -4297 6 1149 2433 246 42 6 chr3 74052346 74052969 -85546814 + MERVL_2A-int LTR ERVL 3747 4391 -1370 6 1149 272 196 0 0 chr3 74053024 74053075 -85546708 - L1_Mur2 LINE L1 -640 5237 5187 7 1149 2792 80 3 0 chr3 74053073 74053450 -85546333 - L1_Mus2 LINE L1 -529 6037 5660 7 1149 1587 107 45 4 chr3 74053450 74053694 -85546089 + L1_Mus2 LINE L1 6312 6565 -1 7 1149 4615 91 3 2 chr3 74053705 74054346 -85545437 - L1_Mus2 LINE L1 -684 5199 4558 7 1149 2144 97 19 0 chr3 74054343 74054662 -85545121 + L1_Mus3 LINE L1 5811 6135 -503 7 1149 2002 117 26 64 chr3 74054656 74055002 -85544781 + L1_Mus3 LINE L1 6299 6631 -7 7 1149 30 45 0 0 chr3 74055242 74055286 -85544497 + AT_rich Low_complexity Low_complexity 1 44 0 7 143 23 54 0 0 chr3 74055674 74055711 -85544072 + AT_rich Low_complexity Low_complexity 1 37 0 7 1150 355 286 27 54 chr3 74055811 74055959 -85543824 - L1_Rod LINE L1 -135 5712 5569 7 1150 21164 112 7 2 chr3 74056583 74060479 -85539304 + L1_Mus1 LINE L1 2653 6565 -2 7 1150 1155 319 38 42 chr3 74060562 74061034 -85538749 + Lx6 LINE L1 6965 7434 -26 7 1150 23 33 0 0 chr3 74061127 74061157 -85538626 + AT_rich Low_complexity Low_complexity 1 30 0 8 1150 23 0 0 0 chr3 74061646 74061669 -85538114 + AT_rich Low_complexity Low_complexity 1 23 0 8 1150 1271 222 56 31 chr3 74061792 74062113 -85537670 - ORR1A4 LTR MaLR 0 329 1 8 1150 389 376 29 0 chr3 74062892 74063065 -85536718 + B3 SINE B2 1 178 -38 8 1150 456 67 0 0 chr3 74063114 74063174 -85536609 + (TA)n Simple_repeat Simple_repeat 2 61 0 8 1150 301 200 51 5 chr3 74063174 74063250 -85536533 - ORR1A1 LTR MaLR -74 304 222 8 1150 32671 81 6 8 chr3 74063257 74068475 -85531308 + L1Md_F3 LINE L1 382 5585 -298 8 1150 7898 57 3 0 chr3 74068476 74069471 -85530312 + L1Md_F3 LINE L1 5587 6584 0 8 1150 29 28 0 0 chr3 74069543 74069579 -85530204 + AT_rich Low_complexity Low_complexity 1 36 0 8 1150 269 374 20 7 chr3 74069701 74069849 -85529934 - MTE-int LTR MaLR -1429 151 2 8 1150 325 242 0 0 chr3 74070078 74070144 -85529639 - B3 SINE B2 0 216 151 8 1150 266 281 0 0 chr3 74070501 74070565 -85529218 - B3 SINE B2 -86 130 67 8 1150 3228 66 31 5 chr3 74070565 74070990 -85528793 + RLTR10C LTR ERVK 1 436 0 9 1150 877 29 0 0 chr3 74070990 74071094 -85528689 + MMERVK10C-int LTR ERVK 1 104 -7477 9 1150 781 133 0 0 chr3 74071096 74071216 -85528567 + MMERVK10C-int LTR ERVK 224 343 -7238 9 1150 736 204 5 11 chr3 74071214 74071402 -85528381 + MMERVK10C-int LTR ERVK 729 915 -6666 9 1150 442 128 13 0 chr3 74071426 74071504 -85528279 + MMERVK10C-int LTR ERVK 874 952 -6629 9 1150 672 255 140 90 chr3 74071594 74071962 -85527821 + MMERVK10C-int LTR ERVK 2079 2424 -4820 9 1150 399 101 6 60 chr3 74071970 74072091 -85527692 + MMERVK10C-int LTR ERVK 1727 1946 -5635 9 1150 26485 53 3 1 chr3 74072098 74075349 -85524434 + MMERVK10C-int LTR ERVK 2552 5810 -1771 9 1150 7275 57 2 51 chr3 74075335 74076319 -85523464 + MMERVK10C-int LTR ERVK 6646 7581 0 9 1150 3254 66 28 5 chr3 74076319 74076745 -85523038 + RLTR10C LTR ERVK 1 436 0 9 1150 353 188 29 0 chr3 74076746 74076815 -85522968 - B3 SINE B2 -145 71 1 8 1150 23 0 0 0 chr3 74076819 74076842 -85522941 + AT_rich Low_complexity Low_complexity 1 23 0 9 1150 414 0 0 0 chr3 74076983 74077029 -85522754 + (CA)n Simple_repeat Simple_repeat 1 46 0 9 1150 22 35 0 0 chr3 74077128 74077157 -85522626 + AT_rich Low_complexity Low_complexity 1 29 0 9 1150 486 0 0 0 chr3 74077490 74077544 -85522239 + (TA)n Simple_repeat Simple_repeat 2 55 0 9 1150 1076 175 9 9 chr3 74077596 74077809 -85521974 - L1_Mus3 LINE L1 -1 6637 6425 9 1150 4398 80 25 2 chr3 74077809 74078409 -85521374 + L1_Mus2 LINE L1 5764 6377 -189 9 1150 23 54 0 0 chr3 74078588 74078625 -85521158 + AT_rich Low_complexity Low_complexity 1 37 0 9 1150 687 186 111 5 chr3 74079037 74079253 -85520530 - Lx9 LINE L1 -6 7638 7400 9 1150 1190 253 70 21 chr3 74079315 74079699 -85520084 - Lx6 LINE L1 -1 7459 7057 9 1150 336 330 20 0 chr3 74079699 74079799 -85519984 - RSINE1 SINE B4 -63 102 1 1 1150 353 207 0 0 chr3 74080070 74080128 -85519655 + ORR1D1 LTR MaLR 3 60 -314 1 1150 1516 197 37 2 chr3 74080142 74080587 -85519196 - RLTR11A2 LTR ERVK -12 515 1 1 1150 899 292 105 17 chr3 74080587 74080883 -85518900 + ORR1D1 LTR MaLR 53 374 0 1 1150 478 321 116 18 chr3 74082736 74083117 -85516666 - MTD LTR MaLR -1 418 1 1 1150 185 329 27 14 chr3 74083308 74083382 -85516401 - L3 LINE CR1 -4399 90 16 1 1150 21 36 0 0 chr3 74083616 74083644 -85516139 + AT_rich Low_complexity Low_complexity 1 28 0 1 1150 1901 201 56 18 chr3 74084679 74085074 -85514709 + MTC LTR MaLR 10 419 -2 1 1150 2018 249 82 23 chr3 74085076 74085166 -85514617 + MTC-int LTR MaLR 15 129 -1129 1 1150 2494 132 44 40 chr3 74085166 74085646 -85514137 - RLTR45 LTR ERVK 0 482 1 1 1150 2018 249 82 23 chr3 74085646 74086127 -85513656 + MTC-int LTR MaLR 130 620 -638 1 1150 1319 265 11 38 chr3 74086105 74086478 -85513305 + MTC-int LTR MaLR 771 1133 -125 1 1150 882 242 58 42 chr3 74086479 74086720 -85513063 - Lx3C LINE L1 -4 6972 6728 1 1150 975 241 53 69 chr3 74086767 74087146 -85512637 - BGLII_B LTR ERVK -2 439 67 1 1150 15587 191 39 17 chr3 74087147 74091316 -85508467 - Lx3C LINE L1 -277 6699 2442 1 1150 7382 84 2 5 chr3 74091316 74092342 -85507441 + L1_Mus2 LINE L1 5543 6565 -1 1 1150 4391 196 112 4 chr3 74092341 74093775 -85506008 - Lx3C LINE L1 -3432 2454 866 1 1150 353 222 53 24 chr3 74094116 74094219 -85505564 + MTC-int LTR MaLR 1171 1252 -6 1 1150 1524 258 100 3 chr3 74094235 74094605 -85505178 + MTC LTR MaLR 11 416 -5 1 1150 8570 112 16 38 chr3 74094760 74096514 -85503269 - Lx3A LINE L1 -6 6975 5253 1 1150 1160 68 0 0 chr3 74096514 74096660 -85503123 - B1_Mus2 SINE Alu 0 147 2 1 1150 4967 88 8 58 chr3 74096660 74096771 -85503012 - Lx3A LINE L1 -634 5252 5155 1 1150 478 207 34 17 chr3 74096771 74096889 -85502894 - URR1B DNA MER1_type -20 205 86 1 1150 537 44 0 0 chr3 74097036 74097104 -85502679 + (CA)n Simple_repeat Simple_repeat 1 68 0 1 1150 288 0 0 0 chr3 74097104 74097135 -85502648 + (GA)n Simple_repeat Simple_repeat 2 33 0 1 1150 299 385 8 0 chr3 74097952 74098082 -85501701 + RSINE1 SINE B4 2 132 -33 1 1150 405 0 0 0 chr3 74098099 74098144 -85501639 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 1150 23 0 0 0 chr3 74099112 74099135 -85500648 + AT_rich Low_complexity Low_complexity 1 23 0 1 1150 368 376 11 0 chr3 74099968 74100146 -85499637 + ERVL-int LTR ERVL 472 651 -5106 1 1150 321 109 0 0 chr3 74100469 74100524 -85499259 + (CATA)n Simple_repeat Simple_repeat 4 58 0 1 1150 634 215 69 117 chr3 74100880 74101098 -85498685 + MTD LTR MaLR 1 206 -194 1 1150 2298 188 27 4 chr3 74101099 74101549 -85498234 + Lx4A LINE L1 6599 7058 0 1 1150 270 69 17 33 chr3 74101608 74101668 -85498115 + (CAAAA)n Simple_repeat Simple_repeat 2 60 0 1 1150 672 288 118 6 chr3 74101678 74101856 -85497927 + MTD LTR MaLR 219 416 -3 1 1150 322 392 25 0 chr3 74101878 74101998 -85497785 + RSINE1 SINE B4 12 134 -31 1 1150 315 0 0 0 chr3 74102004 74102039 -85497744 + (CA)n Simple_repeat Simple_repeat 2 36 0 1 1150 1410 328 42 28 chr3 74102350 74103059 -85496724 + ERVL-int LTR ERVL 2164 2882 -2875 1 1150 21 36 0 0 chr3 74103086 74103114 -85496669 + AT_rich Low_complexity Low_complexity 1 28 0 1 1150 747 87 0 0 chr3 74103275 74103378 -85496405 - L1Md_F2 LINE L1 -392 6190 6088 1 1150 2573 113 10 8 chr3 74103378 74103763 -85496020 + L1_Mus1 LINE L1 6182 6567 0 1 1150 21 0 0 0 chr3 74103804 74103825 -85495958 + AT_rich Low_complexity Low_complexity 1 21 0 1 1150 228 304 0 0 chr3 74103825 74103904 -85495879 + L1MA5 LINE L1 6195 6273 -27 1 1150 2993 54 0 0 chr3 74104065 74104419 -85495364 + IAPEY2_LTR LTR ERVK 1 354 -3 1 1150 9211 129 16 26 chr3 74104423 74106051 -85493732 + IAPEY3-int LTR ERVK 21 1982 -5698 1 1150 3515 53 5 0 chr3 74106046 74106476 -85493307 + IAPEY3-int LTR ERVK 2258 2689 -4991 1 1150 465 34 0 17 chr3 74106469 74106529 -85493254 + IAPEY3-int LTR ERVK 4852 4910 -2770 1 1150 4955 83 86 0 chr3 74106533 74107234 -85492549 + IAPEY3-int LTR ERVK 6920 7680 0 1 1150 2976 56 0 0 chr3 74107234 74107591 -85492192 + IAPEY2_LTR LTR ERVK 1 357 0 1 1150 408 305 30 32 chr3 74107875 74108057 -85491726 + ERVL-int LTR ERVL 3368 3575 -2182 1 1150 4952 122 37 64 chr3 74108223 74109148 -85490635 + RLTR13D6 LTR ERVK 1 1023 0 1 1150 21 89 0 0 chr3 74110306 74110362 -85489421 + AT_rich Low_complexity Low_complexity 1 56 0 1 1150 390 91 0 0 chr3 74110434 74110489 -85489294 + (TA)n Simple_repeat Simple_repeat 2 56 0 1 1150 452 303 91 0 chr3 74110587 74110655 -85489128 - RLTR20A2 LTR ERVK -19 559 492 1 1150 615 60 0 0 chr3 74110655 74110739 -85489044 + (CA)n Simple_repeat Simple_repeat 2 85 0 1 1150 452 307 370 36 chr3 74110739 74111008 -85488775 - RLTR20A2 LTR ERVK -87 491 127 1 1150 322 308 136 28 chr3 74111014 74111191 -85488592 - RMER1C Other Other -736 606 411 1 1150 219 286 13 0 chr3 74112629 74112658 -85487125 + polypurine Low_complexity Low_complexity 1 29 0 1 1150 342 98 0 0 chr3 74112658 74112709 -85487074 + (CA)n Simple_repeat Simple_repeat 2 52 0 1 1150 219 286 13 0 chr3 74112709 74112756 -85487027 + polypurine Low_complexity Low_complexity 30 77 0 1 1150 269 191 0 0 chr3 74113216 74113258 -85486525 + B3A SINE B2 2 43 -155 1 1150 401 254 8 47 chr3 74113263 74113391 -85486392 - Lx6 LINE L1 -1038 6422 6300 1 1150 3011 234 74 15 chr3 74113394 74114503 -85485280 - Lx6 LINE L1 -887 6163 5041 1 1150 582 311 152 3 chr3 74114500 74114828 -85484955 + Lx6 LINE L1 6435 6811 -649 1 1150 329 343 10 0 chr3 74114940 74115039 -85484744 - B1_Mur3 SINE Alu 0 149 50 1 1150 26 0 0 0 chr3 74115283 74115309 -85484474 + AT_rich Low_complexity Low_complexity 1 26 0 1 1150 421 305 95 12 chr3 74115331 74115500 -85484283 - RMER15 LTR ERVL 0 575 393 1 1150 180 0 0 0 chr3 74115730 74115750 -85484033 + (TA)n Simple_repeat Simple_repeat 1 20 0 1 1150 628 333 18 0 chr3 74115763 74115928 -85483855 + B3 SINE B2 11 178 -38 1 1150 351 0 0 0 chr3 74116019 74116058 -85483725 + (TTTTA)n Simple_repeat Simple_repeat 2 40 0 1 1150 224 194 60 20 chr3 74116538 74116638 -85483145 + (TTATA)n Simple_repeat Simple_repeat 5 108 0 1 1150 271 253 132 0 chr3 74118706 74118797 -85480986 - Lx9 LINE L1 -213 7431 7329 1 1150 744 189 79 51 chr3 74118891 74119069 -85480714 - Lx9 LINE L1 -272 7372 7190 1 1150 412 242 64 57 chr3 74119381 74119521 -85480262 + Lx9 LINE L1 6702 6842 -802 1 1150 389 216 22 11 chr3 74122699 74122788 -85476995 + Lx6 LINE L1 6625 6714 -746 1 1150 9696 167 20 40 chr3 74122883 74124938 -85474845 + L1_Mur2 LINE L1 2440 4453 -1424 1 1150 1497 263 66 43 chr3 74124936 74125377 -85474406 + Lx5 LINE L1 6600 7050 0 1 1150 24 32 0 0 chr3 74125790 74125821 -85473962 + AT_rich Low_complexity Low_complexity 1 31 0 1 1150 5762 108 7 4 chr3 74126540 74127375 -85472408 - L1_Mus3 LINE L1 -10 6628 5791 1 1150 189 0 0 0 chr3 74127375 74127396 -85472387 + (TTTTG)n Simple_repeat Simple_repeat 3 23 0 1 1150 3003 136 331 18 chr3 74127984 74128917 -85470866 - L1_Mus4 LINE L1 -801 5835 4526 1 1150 10306 108 14 1 chr3 74128942 74130458 -85469325 + L1_Mm LINE L1 4329 5864 -19 1 1150 486 290 30 0 chr3 74130458 74130472 -85469311 + B4 SINE B4 70 160 -132 1 1150 952 123 0 52 chr3 74130472 74130545 -85469238 + B1_Mm SINE Alu 2 70 -77 1 1150 2571 107 34 12 chr3 74130545 74130953 -85468830 - L1Md_F2 LINE L1 0 6582 6166 1 1150 486 290 30 0 chr3 74130953 74130996 -85468787 + B4 SINE B4 161 203 -89 1 1150 952 123 0 52 chr3 74130996 74131033 -85468750 + B1_Mm SINE Alu 71 147 0 1 1150 4884 101 11 0 chr3 74131053 74131755 -85468028 + L1_Mus2 LINE L1 5855 6564 -2 1 1150 24 32 0 0 chr3 74132046 74132077 -85467706 + AT_rich Low_complexity Low_complexity 1 31 0 1 1150 563 304 13 20 chr3 74132583 74132734 -85467049 + B3A SINE B2 2 151 -47 1 1150 234 0 0 0 chr3 74133024 74133050 -85466733 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 1 1150 186 118 0 0 chr3 74133423 74133457 -85466326 + (GA)n Simple_repeat Simple_repeat 1 34 0 1 1150 1123 262 77 72 chr3 74133597 74134041 -85465742 - RMER13B LTR ERVK -4 904 459 1 1150 532 295 14 21 chr3 74134049 74134191 -85465592 + RMER13B LTR ERVK 705 845 -63 1 1150 832 252 49 82 chr3 74134186 74134693 -85465090 - RMER17B LTR ERVK -454 504 2 1 1150 183 129 0 0 chr3 74134750 74134781 -85465002 + (A)n Simple_repeat Simple_repeat 1 31 0 1 1150 456 304 56 43 chr3 74137727 74138178 -85461605 + MMERVK10C-int LTR ERVK 2966 3532 -3289 1 1150 326 293 110 63 chr3 74139427 74139744 -85460039 + MMERVK10C-int LTR ERVK 4938 5269 -1552 1 1150 2127 213 65 28 chr3 74139966 74140507 -85459276 + RLTR31_Mm LTR ERVK 1 561 0 1 1150 378 291 39 16 chr3 74143061 74143190 -85456593 - B3 SINE B2 -7 209 78 1 1150 787 179 7 104 chr3 74143214 74143407 -85456376 + ORR1A3 LTR MaLR 1 201 -145 1 1150 448 187 0 0 chr3 74143402 74143477 -85456306 - MT2B LTR ERVL -350 251 177 1 1150 3160 149 41 6 chr3 74143481 74144021 -85455762 - ORR1A2-int LTR MaLR -1403 560 2 1 1150 1640 143 109 61 chr3 74144022 74144334 -85455449 - ORR1A2 LTR MaLR 0 327 1 1 1150 9443 200 21 27 chr3 74144335 74146240 -85453543 - MurERV4_19-int LTR ERVK -3885 1895 1 1 1150 2334 209 128 13 chr3 74146240 74146788 -85452995 - RMER19C LTR ERVK 0 611 1 1 1150 371 179 104 7 chr3 74146919 74147054 -85452729 + L1_Mus4 LINE L1 6487 6634 -2 1 1150 26 64 0 0 chr3 74147236 74147283 -85452500 + AT_rich Low_complexity Low_complexity 1 47 0 1 1150 220 270 22 0 chr3 74147904 74147993 -85451790 + GA-rich Low_complexity Low_complexity 1 91 0 1 1150 1025 106 0 0 chr3 74149837 74149978 -85449805 - B1_Mus2 SINE Alu -5 142 2 1 1150 2399 245 82 28 chr3 74150240 74150874 -85448909 - Lx5 LINE L1 0 7050 6383 1 1150 1046 328 12 27 chr3 74151285 74151692 -85448091 + Lx7 LINE L1 6876 7276 -420 1 1150 22 56 0 0 chr3 74151972 74152008 -85447775 + AT_rich Low_complexity Low_complexity 1 36 0 1 1150 4227 85 0 0 chr3 74152028 74152594 -85447189 - L1_Mm LINE L1 -774 5109 4544 1 1150 1076 90 0 0 chr3 74152590 74152734 -85447049 + L1Md_F2 LINE L1 5442 5585 -298 1 1150 6747 71 72 4 chr3 74152736 74153656 -85446127 + L1Md_F2 LINE L1 5588 6569 -13 1 1150 21 36 0 0 chr3 74153680 74153708 -85446075 + AT_rich Low_complexity Low_complexity 1 28 0 1 1150 1313 49 0 0 chr3 74153787 74153951 -85445832 - L1_Mm LINE L1 -415 5468 5305 1 1150 5781 61 0 0 chr3 74153947 74154687 -85445096 + L1_Mm LINE L1 4542 5281 -602 1 1150 1217 91 16 11 chr3 74154673 74154862 -85444921 + MusHAL1 LINE L1 1708 1897 -815 1 1150 5382 245 60 87 chr3 74154857 74155083 -85444700 + Lx6 LINE L1 1549 1761 -4119 1 1150 1144 74 0 0 chr3 74155083 74155231 -85444552 - B1_Mus1 SINE Alu 0 148 1 1 1150 5382 245 60 87 chr3 74155231 74156816 -85442967 + Lx6 LINE L1 1762 3240 -2640 1 1150 396 0 0 0 chr3 74156816 74156860 -85442923 + (TAAA)n Simple_repeat Simple_repeat 2 45 0 1 1150 5382 266 98 66 chr3 74156860 74159961 -85439822 + Lx6 LINE L1 3240 6886 -574 1 1150 45 98 0 0 chr3 74160033 74160176 -85439607 + AT_rich Low_complexity Low_complexity 1 143 0 1 1150 209 286 44 0 chr3 74160228 74160319 -85439464 + (CATATA)n Simple_repeat Simple_repeat 4 98 0 1 1150 268 308 88 74 chr3 74160352 74160674 -85439109 - L1MA6 LINE L1 -27 6273 5926 1 1150 242 29 29 0 chr3 74160674 74160709 -85439074 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 2 1150 268 308 88 74 chr3 74160709 74160817 -85438966 - L1MA6 LINE L1 -375 5925 5837 1 1150 457 352 31 46 chr3 74160880 74161205 -85438578 - Lx8 LINE L1 -2 7471 7152 2 1150 927 251 166 85 chr3 74161286 74161779 -85438004 + MT2A LTR ERVL 1 533 0 2 1150 3159 223 94 14 chr3 74161779 74162596 -85437187 + MERVL_2A-int LTR ERVL 1 883 -4878 2 1150 3099 186 120 10 chr3 74163082 74163810 -85435973 + Lx2B LINE L1 5785 6600 -400 2 1150 957 71 0 0 chr3 74163810 74163936 -85435847 + B1_Mm SINE Alu 22 147 0 2 1150 180 0 0 0 chr3 74163936 74163956 -85435827 + (A)n Simple_repeat Simple_repeat 1 20 0 2 1150 407 259 101 22 chr3 74164047 74164225 -85435558 + Lx2B LINE L1 6803 6994 -6 2 1150 477 0 0 0 chr3 74164385 74164438 -85435345 + (GA)n Simple_repeat Simple_repeat 2 54 0 2 1150 1519 87 32 0 chr3 74164641 74164860 -85434923 - L1_Mus2 LINE L1 0 6566 6341 2 1150 1030 47 0 0 chr3 74164860 74164987 -85434796 + L1_Mus2 LINE L1 6204 6330 -236 2 1150 479 17 17 0 chr3 74165472 74165532 -85434251 + (CA)n Simple_repeat Simple_repeat 2 62 0 2 1150 871 35 17 0 chr3 74166622 74166737 -85433046 + (GAAAA)n Simple_repeat Simple_repeat 2 118 0 2 1150 405 0 0 0 chr3 74167060 74167105 -85432678 + (TG)n Simple_repeat Simple_repeat 2 46 0 2 1150 25 65 0 0 chr3 74167240 74167286 -85432497 + AT_rich Low_complexity Low_complexity 1 46 0 2 1150 483 73 0 0 chr3 74167622 74167690 -85432093 + (ATATG)n Simple_repeat Simple_repeat 5 72 0 2 1150 21 36 0 0 chr3 74168519 74168547 -85431236 + AT_rich Low_complexity Low_complexity 1 28 0 2 1150 203 118 58 19 chr3 74169658 74169710 -85430073 + (CAAA)n Simple_repeat Simple_repeat 3 56 0 2 1150 408 71 0 0 chr3 74170019 74170075 -85429708 + (TA)n Simple_repeat Simple_repeat 2 57 0 2 1150 33 25 0 0 chr3 74170603 74170643 -85429140 + AT_rich Low_complexity Low_complexity 1 40 0 2 1150 22 0 0 0 chr3 74170656 74170678 -85429105 + AT_rich Low_complexity Low_complexity 1 22 0 2 1150 9464 60 1 7 chr3 74170770 74172730 -85427053 - L1Md_F2 LINE L1 0 6582 4638 2 1150 3232 76 0 11 chr3 74172736 74173178 -85426605 - L1Md_F2 LINE L1 -21 6561 6125 2 1150 937 109 0 0 chr3 74174525 74174672 -85425111 - L1_Mus2 LINE L1 0 6566 6420 2 1150 967 340 77 18 chr3 74174968 74175459 -85424324 - Lx8 LINE L1 -853 6620 6101 2 1150 396 0 0 0 chr3 74175562 74175606 -85424177 + (CA)n Simple_repeat Simple_repeat 2 45 0 2 1150 1354 237 54 3 chr3 74175727 74176023 -85423760 - MTC LTR MaLR -4 417 107 2 1150 689 223 7 7 chr3 74176041 74176181 -85423602 - B1_Mur3 SINE Alu 0 149 10 2 1150 370 314 12 50 chr3 74176042 74176203 -85423580 - ID_B1 SINE B4 0 224 70 2 1150 37 23 0 0 chr3 74176215 74176259 -85423524 + AT_rich Low_complexity Low_complexity 1 44 0 2 1150 270 206 141 64 chr3 74176339 74176417 -85423366 - MTC LTR MaLR -337 84 1 2 1150 495 107 0 0 chr3 74177315 74177390 -85422393 + (TA)n Simple_repeat Simple_repeat 2 76 0 2 1150 1329 286 128 37 chr3 74177440 74178138 -85421645 + L1_Mur3 LINE L1 441 1201 -6511 2 1150 18038 152 56 94 chr3 74178202 74179605 -85420178 + L1_Mur2 LINE L1 587 2073 -3804 2 1150 459 35 0 0 chr3 74179605 74179662 -85420121 + (CA)n Simple_repeat Simple_repeat 2 58 0 2 1150 18038 152 46 137 chr3 74179662 74181244 -85418539 + L1_Mur2 LINE L1 2074 3355 -2522 2 1150 828 278 83 40 chr3 74181244 74181570 -85418213 - RLTR20A LTR ERVK -199 342 3 2 1150 18038 152 46 137 chr3 74181570 74182700 -85417083 + L1_Mur2 LINE L1 3356 4271 -1606 2 1150 1813 125 36 30 chr3 74182700 74183029 -85416754 - IAPEY_LTR LTR ERVK 0 385 55 2 1150 18038 152 46 137 chr3 74183029 74184355 -85415428 + L1_Mur2 LINE L1 4272 5348 -529 2 1150 1137 251 108 33 chr3 74184364 74184726 -85415057 - MTC LTR MaLR -30 391 3 2 1150 1096 282 10 7 chr3 74184728 74185031 -85414752 + Lx7 LINE L1 6142 6445 -1251 2 1150 2524 70 0 17 chr3 74185032 74185381 -85414402 + L1Md_F2 LINE L1 6228 6570 -12 2 1150 423 0 0 0 chr3 74185390 74185437 -85414346 + (GA)n Simple_repeat Simple_repeat 2 48 0 2 1150 262 143 0 0 chr3 74185439 74185481 -85414302 + Lx7 LINE L1 6521 6562 -1134 2 1150 2123 258 180 31 chr3 74185487 74185897 -85413886 + Lx7 LINE L1 6705 7214 -482 2 1150 285 29 0 0 chr3 74185897 74185931 -85413852 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 2 1150 2123 258 180 31 chr3 74185931 74186368 -85413415 + Lx7 LINE L1 7215 7679 -17 2 1150 192 164 14 29 chr3 74186536 74186605 -85413178 + (TA)n Simple_repeat Simple_repeat 2 69 0 2 1151 25 0 0 0 chr3 74186773 74186798 -85412985 + AT_rich Low_complexity Low_complexity 1 25 0 2 1151 3191 66 2 0 chr3 74186942 74187366 -85412417 + L1Md_F2 LINE L1 6156 6580 -2 2 1151 1534 112 70 52 chr3 74187553 74187850 -85411933 - RLTR9A LTR ERVK 0 368 60 2 1151 371 289 205 0 chr3 74188329 74188485 -85411298 - ORR1D1 LTR MaLR -4 370 183 2 1151 1420 357 69 24 chr3 74188739 74189628 -85410155 + Lx8 LINE L1 6318 7246 -227 2 1151 309 351 28 19 chr3 74189851 74190063 -85409720 - L1MC1 LINE L1 -106 6227 6014 2 1151 545 261 66 11 chr3 74190253 74190435 -85409348 - Lx9 LINE L1 -182 7462 7271 2 1151 516 274 107 0 chr3 74190433 74190601 -85409182 - Lx9 LINE L1 -890 6754 6569 2 1151 377 250 48 0 chr3 74190604 74190708 -85409075 - L1_Rod LINE L1 -111 5736 5628 2 1151 414 0 0 0 chr3 74191720 74191766 -85408017 + (CA)n Simple_repeat Simple_repeat 1 46 0 2 1151 911 130 0 7 chr3 74191978 74192133 -85407650 - Lx LINE L1 -3 6651 6498 2 1151 1223 296 132 26 chr3 74192276 74193104 -85406679 - Lx9 LINE L1 -1092 6552 5638 2 1151 554 315 54 21 chr3 74193138 74193566 -85406217 - L1MC LINE L1 -1013 5133 4692 2 1151 523 316 88 13 chr3 74193944 74194261 -85405522 - L1MC LINE L1 -1906 4240 3900 2 1151 793 292 133 16 chr3 74196162 74196485 -85403298 + MTD LTR MaLR 45 405 -14 2 1151 16629 62 4 0 chr3 74196692 74199535 -85400248 - L1Md_F2 LINE L1 0 6582 3729 2 1151 21 0 0 0 chr3 74199580 74199601 -85400182 + AT_rich Low_complexity Low_complexity 1 21 0 2 1151 387 0 0 0 chr3 74199610 74199653 -85400130 + (TG)n Simple_repeat Simple_repeat 2 44 0 2 1151 427 355 19 13 chr3 74199658 74199815 -85399968 - B3 SINE B2 -46 170 13 2 1151 515 103 0 0 chr3 74201872 74201950 -85397833 + L1_Mus2 LINE L1 6488 6565 -1 2 1151 348 333 17 17 chr3 74203514 74203633 -85396150 + ID_B1 SINE B4 9 127 -97 2 1151 21 36 0 0 chr3 74204133 74204161 -85395622 + AT_rich Low_complexity Low_complexity 1 28 0 2 1151 531 344 52 13 chr3 74205262 74205495 -85394288 + B4A SINE B4 2 243 -49 2 1151 405 39 0 0 chr3 74205502 74205553 -85394230 + (CA)n Simple_repeat Simple_repeat 2 52 0 2 1151 21 36 0 0 chr3 74205733 74205761 -85394022 + AT_rich Low_complexity Low_complexity 1 28 0 2 1151 2355 257 59 46 chr3 74206175 74206757 -85393026 + L1VL4 LINE L1 264 830 -5730 2 1151 7919 53 4 0 chr3 74206757 74207749 -85392034 + L1Md_T LINE L1 5587 6582 0 2 1151 3728 156 23 28 chr3 74207749 74208629 -85391154 + L1VL4 LINE L1 831 1701 -2116 2 1151 3685 141 5 8 chr3 74208626 74208771 -85391012 + L1_Mm LINE L1 4969 5110 -773 2 1151 1599 5 0 0 chr3 74208771 74208972 -85390811 + (GAA)n Simple_repeat Simple_repeat 1 201 0 2 1151 3685 141 5 8 chr3 74208972 74209448 -85390335 + L1_Mm LINE L1 5111 5588 -295 2 1151 4039 112 5 2 chr3 74209448 74210050 -85389733 + L1_Mus3 LINE L1 6035 6638 0 2 1151 526 280 167 28 chr3 74210814 74210994 -85388789 + B3 SINE B2 2 206 -10 2 1151 23 0 0 0 chr3 74211085 74211108 -85388675 + AT_rich Low_complexity Low_complexity 1 23 0 2 1151 55 29 0 0 chr3 74211790 74211859 -85387924 + AT_rich Low_complexity Low_complexity 1 69 0 2 1151 333 0 0 0 chr3 74212441 74212478 -85387305 + (T)n Simple_repeat Simple_repeat 1 37 0 2 1151 508 306 80 34 chr3 74212478 74212715 -85387068 + Lx8 LINE L1 7105 7352 -121 2 1151 22 70 0 0 chr3 74212731 74212774 -85387009 + AT_rich Low_complexity Low_complexity 1 43 0 2 1151 547 305 28 23 chr3 74212895 74213110 -85386673 + B3 SINE B2 1 216 0 2 1151 23 0 0 0 chr3 74214209 74214232 -85385551 + AT_rich Low_complexity Low_complexity 1 23 0 2 1151 354 212 51 7 chr3 74214351 74214489 -85385294 + (TA)n Simple_repeat Simple_repeat 2 145 0 2 1151 306 87 0 0 chr3 74214749 74214795 -85384988 + (CA)n Simple_repeat Simple_repeat 1 46 0 2 1151 1121 86 6 0 chr3 74216171 74216334 -85383449 + (TCTCCC)n Simple_repeat Simple_repeat 3 166 0 2 1151 28 61 0 0 chr3 74217801 74217850 -85381933 + AT_rich Low_complexity Low_complexity 1 49 0 2 1151 2957 50 0 0 chr3 74218367 74218726 -85381057 - L1Md_F2 LINE L1 -139 6443 6085 2 1151 1102 57 0 37 chr3 74218726 74218889 -85380894 + L1Md_F2 LINE L1 6426 6582 0 2 1151 3193 288 81 23 chr3 74218949 74219092 -85380691 - Lx7 LINE L1 0 7696 7556 2 1151 207 139 0 0 chr3 74219092 74219128 -85380655 + (ATG)n Simple_repeat Simple_repeat 1 36 0 2 1151 3193 288 81 23 chr3 74219128 74220147 -85379636 - Lx7 LINE L1 -141 7555 6467 2 1151 26 50 0 0 chr3 74220864 74220904 -85378879 + AT_rich Low_complexity Low_complexity 1 40 0 2 1151 833 181 306 7 chr3 74221295 74221565 -85378218 + ORR1B2 LTR MaLR 1 351 -16 2 1151 377 311 86 25 chr3 74221965 74222163 -85377620 - RMER20B LTR ERVK -289 338 129 2 1151 21 57 0 0 chr3 74222437 74222472 -85377311 + AT_rich Low_complexity Low_complexity 1 35 0 2 1151 342 152 0 0 chr3 74222611 74222670 -85377113 + (TG)n Simple_repeat Simple_repeat 1 59 0 2 1151 53 40 0 0 chr3 74222670 74222744 -85377039 + AT_rich Low_complexity Low_complexity 1 74 0 2 1151 226 213 16 16 chr3 74223282 74223364 -85376419 + A-rich Low_complexity Low_complexity 1 82 0 2 1151 1027 84 21 14 chr3 74224567 74224712 -85375071 + B1_Mm SINE Alu 2 147 0 2 1151 2904 188 63 21 chr3 74225071 74225768 -85374015 + RMER6A LTR ERVK 1 756 0 2 1151 26 50 0 0 chr3 74225914 74225954 -85373829 + AT_rich Low_complexity Low_complexity 1 40 0 2 1151 453 275 16 32 chr3 74226038 74226162 -85373621 - RSINE1 SINE B4 0 165 44 2 1151 546 159 28 35 chr3 74226256 74226399 -85373384 - Lx3_Mus LINE L1 -5 7004 6863 2 1151 1008 287 54 113 chr3 74226792 74227252 -85372531 - RLTR18B LTR ERVK -9 503 71 2 1151 4358 61 0 0 chr3 74227252 74227796 -85371987 - L1_Mus1 LINE L1 -396 6171 5628 2 1151 253 309 0 134 chr3 74227796 74227809 -85371974 - RLTR18B LTR ERVK -394 118 110 2 1151 2937 55 3 0 chr3 74227809 74228172 -85371611 + L1_Mus1 LINE L1 6203 6566 -1 2 1151 253 309 0 134 chr3 74228172 74228255 -85371528 - RLTR18B LTR ERVK -403 109 35 2 1151 846 236 50 0 chr3 74228249 74228448 -85371335 + URR1B DNA MER1_type 17 225 0 2 1151 347 154 31 0 chr3 74228505 74228570 -85371213 + MTD LTR MaLR 1 67 -352 2 1151 1355 254 45 57 chr3 74228605 74229006 -85370777 + MTC-int LTR MaLR 321 716 -542 2 1151 277 203 47 0 chr3 74228997 74229061 -85370722 + MTD LTR MaLR 346 412 -7 2 1151 285 420 37 12 chr3 74229067 74229231 -85370552 - B3A SINE B2 -30 168 1 2 1151 21 82 0 0 chr3 74229644 74229693 -85370090 + AT_rich Low_complexity Low_complexity 1 49 0 2 1151 29 0 0 0 chr3 74229736 74229765 -85370018 + AT_rich Low_complexity Low_complexity 1 29 0 3 1151 345 354 60 25 chr3 74230741 74230941 -85368842 + MamRep605 Unknown Unknown 401 607 -269 3 1151 728 50 10 0 chr3 74231706 74231807 -85367976 + (TATG)n Simple_repeat Simple_repeat 2 103 0 3 1151 791 225 13 71 chr3 74231812 74232051 -85367732 - Lx4B LINE L1 -18 7040 6816 3 1151 1522 171 42 0 chr3 74232048 74232311 -85367472 - Lx4B LINE L1 -435 6623 6350 3 1151 1280 281 31 14 chr3 74232546 74232903 -85366880 + Lx6 LINE L1 7098 7460 0 3 1151 931 17 25 0 chr3 74233084 74233204 -85366579 + (TCTA)n Simple_repeat Simple_repeat 2 124 0 3 1151 1772 125 104 16 chr3 74233350 74233668 -85366115 + Lx LINE L1 6302 6647 -7 3 1151 21 0 0 0 chr3 74233734 74233755 -85366028 + AT_rich Low_complexity Low_complexity 1 21 0 3 1151 660 89 0 0 chr3 74233928 74234029 -85365754 + (TG)n Simple_repeat Simple_repeat 2 102 0 3 1151 1066 302 61 31 chr3 74234086 74234530 -85365253 - RMER5 LTR ERV1 -45 489 33 3 1151 2133 48 4 0 chr3 74234901 74235169 -85364614 + L1_Mus1 LINE L1 6299 6567 0 3 1151 1999 247 104 21 chr3 74235337 74235805 -85363978 + RMER1C Other Other 720 1198 -144 3 1151 234 0 0 0 chr3 74235805 74235831 -85363952 + (TTG)n Simple_repeat Simple_repeat 2 27 0 3 1151 1999 247 104 21 chr3 74235831 74235929 -85363854 + RMER1C Other Other 1199 1332 -10 3 1151 981 122 0 35 chr3 74235947 74236091 -85363692 + B1_Mus1 SINE Alu 1 139 -9 3 1151 327 65 0 0 chr3 74236091 74236137 -85363646 + (TTAA)n Simple_repeat Simple_repeat 1 46 0 3 1151 618 76 38 8 chr3 74236153 74236286 -85363497 + (TAGA)n Simple_repeat Simple_repeat 4 140 0 3 1151 328 300 92 70 chr3 74236390 74236886 -85362897 - L1M2 LINE L1 -1390 4490 4003 3 1151 524 301 52 68 chr3 74237031 74237470 -85362313 - L1M2 LINE L1 -2632 3511 3080 3 1151 22 0 0 0 chr3 74237889 74237911 -85361872 + AT_rich Low_complexity Low_complexity 1 22 0 3 1151 309 51 0 0 chr3 74238065 74238104 -85361679 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 3 1151 3016 191 90 103 chr3 74238449 74239061 -85360722 + RLTR25B LTR ERVK 1 617 -411 3 1151 3012 88 2 9 chr3 74239061 74239487 -85360296 + L1Md_F2 LINE L1 6147 6569 -13 3 1151 3016 191 90 103 chr3 74239487 74239738 -85360045 + RLTR25B LTR ERVK 618 853 -175 3 1151 609 228 83 77 chr3 74239874 74239929 -85359854 + RLTR25B LTR ERVK 912 973 -130 3 1151 189 0 0 0 chr3 74239929 74239950 -85359833 + (CAGAG)n Simple_repeat Simple_repeat 3 23 0 3 1151 738 23 0 0 chr3 74239950 74240038 -85359745 + (GA)n Simple_repeat Simple_repeat 1 88 0 3 1151 609 228 83 77 chr3 74240038 74240162 -85359621 + RLTR25B LTR ERVK 974 1092 -11 3 1151 530 359 56 22 chr3 74240169 74240488 -85359295 - Lx8 LINE L1 -611 6862 6533 3 1151 204 40 0 0 chr3 74240489 74240514 -85359269 + (T)n Simple_repeat Simple_repeat 1 25 0 3 1151 36904 5 47 0 chr3 74240531 74246580 -85353203 - L1Md_A LINE L1 0 6582 232 3 1151 249 33 0 0 chr3 74247726 74247756 -85352027 + (A)n Simple_repeat Simple_repeat 1 30 0 3 1151 545 287 89 36 chr3 74247808 74248032 -85351751 + RMER15 LTR ERVL 336 571 -4 3 1151 714 281 49 38 chr3 74248462 74248728 -85351055 - Lx6 LINE L1 -43 7417 7149 3 1151 405 259 83 0 chr3 74249972 74250080 -85349703 - ORR1E LTR MaLR -213 146 30 3 1151 438 350 67 5 chr3 74251623 74251818 -85347965 - MLT1D LTR MaLR -2 503 297 3 1151 233 305 0 12 chr3 74252019 74252102 -85347681 - Lx7 LINE L1 -3 7693 7612 3 1151 1069 264 89 39 chr3 74252101 74252483 -85347300 + Lx7 LINE L1 6906 7306 -390 3 1151 197 98 24 0 chr3 74252487 74252528 -85347255 + (CAAAAA)n Simple_repeat Simple_repeat 4 45 0 3 1151 225 83 0 0 chr3 74252552 74252588 -85347195 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 3 1151 213 119 33 33 chr3 74252628 74252689 -85347094 + T-rich Low_complexity Low_complexity 3 63 0 3 1151 256 238 96 20 chr3 74252902 74253048 -85346735 + Lx7 LINE L1 7445 7601 -95 3 1151 951 190 24 48 chr3 74253319 74253529 -85346254 - L1_Mur1 LINE L1 -233 5653 5449 3 1151 7409 109 5 82 chr3 74253543 74255043 -85344740 - L1_Mus1 LINE L1 0 6567 5197 3 1151 231 188 0 0 chr3 74255531 74255579 -85344204 + Lx7 LINE L1 6981 7028 -668 3 1151 912 196 0 0 chr3 74255643 74255806 -85343977 + URR1A DNA MER1_type 64 226 0 3 1151 597 335 6 0 chr3 74255808 74255981 -85343802 + Lx6 LINE L1 7030 7203 -257 3 1151 38763 35 1 0 chr3 74255985 74261394 -85338389 - L1Md_T LINE L1 0 6582 1170 3 1151 5580 159 24 30 chr3 74261400 74262543 -85337240 - L1Md_T LINE L1 -5411 1205 99 3 1151 934 279 30 4 chr3 74262536 74262799 -85336984 + Lx6 LINE L1 7187 7456 -4 3 1151 454 312 59 84 chr3 74263673 74263876 -85335907 + B3A SINE B2 1 198 0 3 1151 25 51 0 0 chr3 74264138 74264177 -85335606 + AT_rich Low_complexity Low_complexity 1 39 0 3 1151 258 32 0 0 chr3 74265152 74265183 -85334600 + (TG)n Simple_repeat Simple_repeat 1 31 0 3 1151 397 251 16 48 chr3 74265185 74265320 -85334463 - Lx7 LINE L1 -8 7688 7555 3 1151 353 58 0 19 chr3 74265320 74265373 -85334410 + (TAA)n Simple_repeat Simple_repeat 2 53 0 3 1151 397 251 16 48 chr3 74265373 74265425 -85334358 - Lx7 LINE L1 -142 7554 7508 3 1151 1408 28 6 6 chr3 74266023 74266201 -85333582 + (TTC)n Simple_repeat Simple_repeat 3 180 0 3 1151 1127 112 0 11 chr3 74266203 74266383 -85333400 + (TTCTCC)n Simple_repeat Simple_repeat 3 180 0 3 1151 197 65 0 31 chr3 74266385 74266417 -85333366 + (TCC)n Simple_repeat Simple_repeat 3 33 0 3 1151 435 173 37 0 chr3 74266584 74266665 -85333118 + RMER1B Other Other 728 811 -255 3 1151 21 36 0 0 chr3 74267300 74267328 -85332455 + AT_rich Low_complexity Low_complexity 1 28 0 3 1151 254 353 102 29 chr3 74267410 74267547 -85332236 + RSINE1 SINE B4 4 150 -15 3 1151 549 309 47 6 chr3 74267575 74267744 -85332039 + B3 SINE B2 39 214 -2 3 1151 393 22 0 0 chr3 74268317 74268363 -85331420 + (TAGA)n Simple_repeat Simple_repeat 3 48 0 3 1151 958 312 58 39 chr3 74268395 74268758 -85331025 + ORR1D2 LTR MaLR 1 370 0 3 1151 289 399 0 20 chr3 74269550 74269696 -85330087 + RSINE1 SINE B4 4 146 -19 3 1151 2788 140 0 9 chr3 74269775 74270214 -85329569 - L1_Mus4 LINE L1 -82 5801 5367 3 1151 5613 103 33 1 chr3 74270214 74271039 -85328744 + L1_Mus4 LINE L1 5786 6636 0 3 1151 360 315 0 53 chr3 74271209 74271323 -85328460 + B1F SINE Alu 1 108 -41 3 1151 226 256 49 49 chr3 74271638 74271720 -85328063 - Charlie21a DNA MER1_type -492 721 640 3 1151 540 84 0 0 chr3 74272972 74273055 -85326728 + (CA)n Simple_repeat Simple_repeat 2 84 0 3 1151 500 30 0 15 chr3 74273194 74273261 -85326522 + (TA)n Simple_repeat Simple_repeat 1 66 0 3 1151 201 121 0 79 chr3 74273269 74273332 -85326451 + A-rich Low_complexity Low_complexity 3 60 0 3 1151 512 297 33 39 chr3 74273779 74273961 -85325822 - B3A SINE B2 -15 183 3 3 1151 396 0 0 0 chr3 74274423 74274467 -85325316 + (TA)n Simple_repeat Simple_repeat 2 45 0 3 1151 28683 51 0 7 chr3 74274538 74280225 -85319558 + L1Md_T LINE L1 1 5589 -297 3 1151 8349 37 0 0 chr3 74280225 74281221 -85318562 + L1Md_T LINE L1 5590 6585 0 3 1151 2286 131 3 45 chr3 74281598 74281973 -85317810 + RLTR10D LTR ERVK 1 359 0 3 1151 372 43 0 0 chr3 74281977 74282023 -85317760 + (TG)n Simple_repeat Simple_repeat 1 46 0 3 1151 812 199 7 0 chr3 74282602 74282743 -85317040 - B1_Mur4 SINE Alu 0 150 9 3 1151 23 33 0 0 chr3 74282884 74282914 -85316869 + AT_rich Low_complexity Low_complexity 1 30 0 3 1151 993 214 73 52 chr3 74282991 74283277 -85316506 - ORR1D1 LTR MaLR -20 354 63 3 1151 455 0 18 0 chr3 74283280 74283335 -85316448 + (TAGA)n Simple_repeat Simple_repeat 1 56 0 3 1151 187 309 42 83 chr3 74284840 74284960 -85314823 + L4 LINE RTE 1003 1117 -912 3 1151 210 200 0 0 chr3 74285006 74285041 -85314742 + B4 SINE B4 40 74 -218 3 1151 279 248 27 4 chr3 74285073 74285163 -85314620 + B4 SINE B4 9 101 -64 3 1151 270 0 0 0 chr3 74285208 74285238 -85314545 + (CA)n Simple_repeat Simple_repeat 2 31 0 3 1151 189 0 0 0 chr3 74286024 74286045 -85313738 + (CA)n Simple_repeat Simple_repeat 2 22 0 3 1151 3848 234 57 19 chr3 74286952 74287927 -85311856 + Lx4B LINE L1 6041 7053 -5 3 1151 23 78 0 0 chr3 74287933 74287984 -85311799 + AT_rich Low_complexity Low_complexity 1 51 0 3 1151 2726 139 155 4 chr3 74288727 74289224 -85310559 + L1_Mus4 LINE L1 6065 6636 0 3 1151 203 176 0 0 chr3 74289338 74289372 -85310411 + CT-rich Low_complexity Low_complexity 1 34 0 3 1151 348 257 28 37 chr3 74289372 74289386 -85310397 - B1_Mur1 SINE Alu -1 148 137 3 1151 1283 67 0 11 chr3 74289386 74289566 -85310217 + (TTTC)n Simple_repeat Simple_repeat 1 178 0 3 1151 348 257 28 37 chr3 74289566 74289660 -85310123 - B1_Mur1 SINE Alu -13 136 41 3 1151 28 48 0 0 chr3 74289949 74289991 -85309792 + AT_rich Low_complexity Low_complexity 1 42 0 3 1151 450 36 0 0 chr3 74290034 74290090 -85309693 + (CA)n Simple_repeat Simple_repeat 1 56 0 3 1151 261 0 0 0 chr3 74290090 74290118 -85309665 + (GA)n Simple_repeat Simple_repeat 2 30 0 3 1151 21 0 0 0 chr3 74290135 74290156 -85309627 + AT_rich Low_complexity Low_complexity 1 21 0 3 1151 616 280 87 60 chr3 74290468 74290836 -85308947 - Lx9 LINE L1 -1 7643 7266 3 1151 1620 165 30 62 chr3 74290870 74291255 -85308528 + RLTR31A_Mm LTR ERVK 1 421 -132 3 1151 249 267 37 73 chr3 74291232 74291341 -85308442 + RLTR17 LTR ERVK 588 692 0 3 1151 2696 259 44 16 chr3 74291341 74292133 -85307650 - Lx9 LINE L1 -409 7235 6422 3 1151 10342 76 1 1 chr3 74292140 74293543 -85306240 - L1Md_F2 LINE L1 -1676 4207 2804 3 1151 9502 74 3 3 chr3 74293544 74294821 -85304962 + L1Md_F2 LINE L1 4310 5586 -297 3 1151 8014 51 2 0 chr3 74294821 74295814 -85303969 + L1Md_F2 LINE L1 5587 6581 -1 3 1151 24 0 0 0 chr3 74295943 74295967 -85303816 + AT_rich Low_complexity Low_complexity 1 24 0 3 1151 2001 13 0 0 chr3 74296016 74296247 -85303536 - L1Md_A LINE L1 0 6582 6352 3 1151 21 0 0 0 chr3 74296909 74296930 -85302853 + AT_rich Low_complexity Low_complexity 1 21 0 3 1151 188 390 21 0 chr3 74296999 74297094 -85302689 - MER5A DNA MER1_type -28 161 65 3 1151 207 0 0 0 chr3 74297838 74297861 -85301922 + (TTTTTA)n Simple_repeat Simple_repeat 2 24 0 3 1151 508 307 65 10 chr3 74299102 74299303 -85300480 + ID_B1 SINE B4 5 216 -8 3 1151 1836 298 133 38 chr3 74299821 74300578 -85299205 + Lx6 LINE L1 6592 7420 -40 3 1151 5733 149 23 3 chr3 74300586 74301653 -85298130 + Lx4A LINE L1 5505 6607 -451 3 1151 29100 124 10 19 chr3 74301679 74307711 -85292072 - L1_Mus1 LINE L1 0 6567 584 3 1151 2500 178 8 21 chr3 74307721 74308192 -85291591 + Lx4A LINE L1 6593 7057 -1 3 1151 232 135 56 37 chr3 74308205 74308259 -85291524 + GA-rich Low_complexity Low_complexity 3 57 0 4 1151 996 219 29 20 chr3 74309066 74309348 -85290435 + RLTR26 LTR ERVK 1 197 -445 4 1151 1574 221 65 36 chr3 74309378 74309853 -85289930 + Lx5 LINE L1 813 1301 -5785 4 1151 1714 75 4 0 chr3 74309854 74310107 -85289676 + L1_Mus1 LINE L1 6337 6567 0 4 1151 833 169 14 0 chr3 74310111 74310259 -85289524 + Lx5 LINE L1 5283 5432 -445 4 1151 5562 227 61 13 chr3 74310255 74310287 -85289496 + Lx5 LINE L1 5669 5700 -1350 4 1151 1227 14 0 0 chr3 74310287 74310428 -85289355 + (GAA)n Simple_repeat Simple_repeat 1 141 0 4 1151 5562 227 61 13 chr3 74310428 74310778 -85289005 + Lx5 LINE L1 5701 6060 -990 4 1151 1874 167 22 0 chr3 74310778 74311095 -85288688 - ORR1A3 LTR MaLR -2 324 1 4 1151 5562 227 61 13 chr3 74311095 74311592 -85288191 + Lx5 LINE L1 6061 6581 -469 4 1151 5385 61 1 6 chr3 74311592 74312285 -85287498 + L1Md_F2 LINE L1 5889 6578 -4 4 1151 5562 227 61 13 chr3 74312285 74312722 -85287061 + Lx5 LINE L1 6582 7049 -1 4 1151 213 294 29 14 chr3 74312964 74313033 -85286750 - RSINE1 SINE B4 -84 81 12 4 1151 2103 84 3 7 chr3 74313103 74313392 -85286391 - L1Md_F2 LINE L1 -14 6568 6281 4 1151 536 0 16 0 chr3 74314133 74314197 -85285586 + (TAGA)n Simple_repeat Simple_repeat 4 68 0 4 1151 3846 189 78 36 chr3 74314542 74315458 -85284325 + RMER17B LTR ERVK 5 958 0 4 1151 21 0 0 0 chr3 74316086 74316107 -85283676 + AT_rich Low_complexity Low_complexity 1 21 0 4 1151 599 243 90 7 chr3 74316360 74316505 -85283278 + B3 SINE B2 48 204 -12 4 1151 2875 133 73 28 chr3 74316529 74317023 -85282760 - Lx2 LINE L1 0 6997 6482 4 1152 1105 111 0 16 chr3 74317971 74318154 -85281629 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 4 1152 41 78 0 0 chr3 74318768 74318858 -85280925 + AT_rich Low_complexity Low_complexity 1 90 0 4 1152 2926 33 33 0 chr3 74319255 74319615 -85280168 - L1Md_T LINE L1 -1 6581 6210 4 1152 22 0 0 0 chr3 74320061 74320083 -85279700 + AT_rich Low_complexity Low_complexity 1 22 0 4 1152 2439 206 76 6 chr3 74320111 74320625 -85279158 - Lx4B LINE L1 0 7058 6509 4 1152 791 166 12 24 chr3 74320625 74320792 -85278991 + Lx7 LINE L1 4168 4332 -1545 4 1152 1220 176 25 0 chr3 74320773 74321011 -85278772 + Lx7 LINE L1 4826 5069 -811 4 1152 1464 254 39 9 chr3 74321009 74321591 -85278192 + Lx7 LINE L1 5495 6100 -1596 4 1152 657 193 7 36 chr3 74322245 74322385 -85277398 + B1_Mur4 SINE Alu 14 149 -1 4 1152 209 108 29 71 chr3 74322394 74322464 -85277319 + A-rich Low_complexity Low_complexity 4 70 0 4 1152 2717 139 7 22 chr3 74322464 74322926 -85276857 + Lx3A LINE L1 6522 6976 -5 4 1152 351 0 0 0 chr3 74323284 74323323 -85276460 + (TC)n Simple_repeat Simple_repeat 2 40 0 4 1152 309 26 0 0 chr3 74323323 74323360 -85276423 + (TG)n Simple_repeat Simple_repeat 1 38 0 4 1152 200 133 44 0 chr3 74323362 74323407 -85276376 + (CAGAGA)n Simple_repeat Simple_repeat 2 48 0 4 1152 426 154 0 0 chr3 74323651 74323729 -85276054 + (TG)n Simple_repeat Simple_repeat 1 78 0 4 1152 406 51 0 60 chr3 74324995 74325078 -85274705 + (TTTTA)n Simple_repeat Simple_repeat 3 80 0 4 1152 801 254 16 11 chr3 74325441 74325624 -85274159 - ORR1C2 LTR MaLR 0 384 201 4 1152 2526 147 5 20 chr3 74325938 74326340 -85273443 + RLTR21 LTR ERVK 1 396 -1176 4 1152 277 0 93 0 chr3 74326342 74326385 -85273398 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 4 1152 732 227 35 0 chr3 74326402 74326574 -85273209 - ORR1C2 LTR MaLR -197 181 4 4 1152 3257 282 67 34 chr3 74326577 74327827 -85271956 - ORR1C2-int LTR MaLR 0 1963 1 4 1152 1905 225 21 5 chr3 74327930 74328359 -85271424 - RMER10A LTR ERVL 0 442 7 4 1152 501 384 23 57 chr3 74328985 74329250 -85270533 - MTE2a LTR MaLR -31 348 93 4 1152 1348 287 16 16 chr3 74329261 74329636 -85270147 - Lx5 LINE L1 -3 7047 6673 4 1152 4821 174 62 22 chr3 74329635 74330487 -85269296 + Lx5 LINE L1 5531 6424 -626 4 1152 492 18 0 0 chr3 74330487 74330544 -85269239 + (GA)n Simple_repeat Simple_repeat 1 57 0 4 1152 4821 184 66 30 chr3 74330544 74330768 -85269015 + Lx5 LINE L1 6425 6649 -401 4 1152 234 267 32 32 chr3 74330850 74330912 -85268871 - MTE2a LTR MaLR -317 62 1 4 1152 246 338 13 0 chr3 74331169 74331246 -85268537 + ID4 SINE ID 2 79 -4 4 1152 236 317 99 0 chr3 74331266 74331367 -85268416 + PB1 SINE Alu 4 114 -13 4 1152 394 349 56 19 chr3 74332002 74332218 -85267565 - L2 LINE L2 -2904 515 292 4 1152 608 26 13 0 chr3 74332461 74332539 -85267244 + (TG)n Simple_repeat Simple_repeat 1 79 0 4 1152 2204 144 26 3 chr3 74334540 74334917 -85264866 - Lx LINE L1 -2 6652 6267 4 1152 486 0 0 0 chr3 74335511 74335565 -85264218 + (TG)n Simple_repeat Simple_repeat 1 54 0 4 1152 297 346 8 30 chr3 74335624 74335758 -85264025 + L1MCa LINE L1 383 513 -5995 4 1152 335 313 180 28 chr3 74336022 74336311 -85263472 + L1MCa LINE L1 1180 1512 -4996 4 1152 511 248 8 39 chr3 74336575 74336705 -85263078 + B1_Mur4 SINE Alu 25 150 0 4 1152 841 294 124 45 chr3 74336731 74337216 -85262567 - RLTR40 LTR ERVK -12 805 283 4 1152 2749 197 17 54 chr3 74337225 74337874 -85261909 + L1_Mur2 LINE L1 2062 2686 -3191 4 1152 63 57 0 0 chr3 74337895 74338000 -85261783 + AT_rich Low_complexity Low_complexity 1 105 0 4 1152 2051 214 102 14 chr3 74338156 74338804 -85260979 + L1_Mur2 LINE L1 2700 3404 -2476 4 1152 31 44 0 0 chr3 74339093 74339138 -85260645 + AT_rich Low_complexity Low_complexity 1 45 0 4 1152 349 280 7 64 chr3 74339597 74339738 -85260045 + MYSERV6-int LTR ERVK 3998 4130 -4829 4 1152 922 305 79 16 chr3 74339742 74340311 -85259472 + Lx6 LINE L1 5999 6830 -630 4 1152 392 141 28 0 chr3 74340318 74340389 -85259394 - RLTR11A2 LTR ERVK 0 527 455 4 1152 2065 116 0 0 chr3 74340619 74340911 -85258872 - L1_Mm LINE L1 -264 5619 5328 4 1152 26 30 0 0 chr3 74341171 74341204 -85258579 + AT_rich Low_complexity Low_complexity 1 33 0 4 1152 5448 139 32 7 chr3 74341276 74342186 -85257597 - L1_Mm LINE L1 -193 5690 4758 4 1152 5195 103 0 23 chr3 74342182 74342955 -85256828 + L1_Mus3 LINE L1 5621 6375 -263 4 1152 364 299 0 22 chr3 74342955 74343044 -85256739 + RSINE1 SINE B4 69 155 -10 4 1152 573 373 64 31 chr3 74343832 74344255 -85255528 + MLT1D LTR MaLR 6 442 -63 4 1152 226 350 65 65 chr3 74344703 74344978 -85254805 - MamGypLTR2c LTR Gypsy -8 1060 786 4 1152 3548 31 5 0 chr3 74345490 74345912 -85253871 - L1Md_T LINE L1 -1 6581 6158 4 1152 2078 169 53 2 chr3 74348490 74348888 -85250895 - Lx3B LINE L1 0 6973 6556 4 1152 2856 139 7 80 chr3 74348889 74349437 -85250346 + Lx3B LINE L1 6054 6561 -412 4 1152 22 35 0 0 chr3 74349438 74349467 -85250316 + AT_rich Low_complexity Low_complexity 1 29 0 4 1152 1893 157 60 80 chr3 74349522 74349924 -85249859 - ORR1B1 LTR MaLR 0 394 1 4 1152 211 319 29 0 chr3 74350775 74350844 -85248939 + B4 SINE B4 1 71 -221 4 1152 1061 307 53 20 chr3 74351719 74352118 -85247665 + RMER20A LTR ERVK 103 514 -2 4 1152 3508 177 70 13 chr3 74352180 74352940 -85246843 - L1_Mur2 LINE L1 -299 5578 4776 4 1152 770 235 59 86 chr3 74352944 74353200 -85246583 + Lx2B LINE L1 6750 6998 -2 4 1152 11917 139 16 2 chr3 74353483 74356385 -85243398 - L1_Mus4 LINE L1 -5 6631 3700 4 1152 13597 115 15 2 chr3 74356390 74359301 -85240482 - L1_Mus1 LINE L1 -3 6651 3621 4 1152 36364 31 3 7 chr3 74359300 74364478 -85235305 + L1Md_F2 LINE L1 439 5586 -297 4 1152 7882 50 3 6 chr3 74364478 74365463 -85234320 + L1Md_F2 LINE L1 5587 6568 -14 4 1152 13645 130 12 41 chr3 74365478 74367218 -85232565 - L1Md_F LINE L1 -281 3536 1878 4 1152 200 59 29 0 chr3 74367218 74367252 -85232531 + (TTTG)n Simple_repeat Simple_repeat 3 37 0 4 1152 13645 189 34 64 chr3 74367252 74368878 -85230905 - L1Md_F LINE L1 -1940 1877 310 4 1152 23 54 0 0 chr3 74369382 74369419 -85230364 + AT_rich Low_complexity Low_complexity 1 37 0 4 1152 26 0 0 0 chr3 74370043 74370069 -85229714 + AT_rich Low_complexity Low_complexity 1 26 0 4 1152 1376 230 68 20 chr3 74370588 74370839 -85228944 + L1_Mur3 LINE L1 1804 2057 -3823 4 1152 297 75 0 0 chr3 74370839 74370879 -85228904 + (CA)n Simple_repeat Simple_repeat 2 41 0 4 1152 1376 230 68 20 chr3 74370879 74371083 -85228700 + L1_Mur3 LINE L1 2058 2281 -3599 4 1152 2267 201 84 26 chr3 74371086 74371786 -85227997 + L1_Mur3 LINE L1 2664 3404 -2476 4 1152 189 0 0 0 chr3 74371791 74371812 -85227971 + (TA)n Simple_repeat Simple_repeat 2 22 0 4 1152 6972 34 1 4 chr3 74371817 74372656 -85227127 - L1Md_F3 LINE L1 -17 6567 5731 4 1152 1895 56 0 0 chr3 74372654 74372885 -85226898 + L1Md_F3 LINE L1 5479 5709 -174 4 1152 4109 191 39 64 chr3 74372884 74373952 -85225831 + L1_Mur3 LINE L1 3416 4457 -1423 4 1152 22 56 0 0 chr3 74373975 74374011 -85225772 + AT_rich Low_complexity Low_complexity 1 36 0 4 1152 1927 306 114 18 chr3 74374016 74374776 -85225007 - Lx6 LINE L1 -40 7420 6588 4 1152 1016 237 36 29 chr3 74374788 74375096 -85224687 - Lx5 LINE L1 -1087 5963 5654 4 1152 1527 248 63 22 chr3 74375138 74375550 -85224233 + Lx6 LINE L1 7032 7460 0 4 1152 691 202 17 0 chr3 74375550 74375723 -85224060 + GA-rich Low_complexity Low_complexity 3 178 0 4 1152 1032 101 0 0 chr3 74375723 74375901 -85223882 + (GAAA)n Simple_repeat Simple_repeat 1 178 0 4 1152 757 140 29 12 chr3 74375942 74376115 -85223668 + GA-rich Low_complexity Low_complexity 3 178 0 4 1152 2586 227 58 44 chr3 74376117 74376915 -85222868 + L1_Mur3 LINE L1 4439 5247 -633 4 1152 188 67 0 32 chr3 74377570 74377601 -85222182 + (TAA)n Simple_repeat Simple_repeat 1 30 0 4 1152 25 0 0 0 chr3 74377701 74377726 -85222057 + AT_rich Low_complexity Low_complexity 1 25 0 4 1152 572 104 9 19 chr3 74377730 74377838 -85221945 - L1_Mus2 LINE L1 -2 6564 6458 4 1152 253 265 73 0 chr3 74378121 74378189 -85221594 - B4A SINE B4 -218 74 2 4 1152 1535 221 35 209 chr3 74379284 74380024 -85219759 + RMER19C LTR ERVK 1 611 0 4 1152 489 17 0 0 chr3 74380301 74380359 -85219424 + (TG)n Simple_repeat Simple_repeat 2 59 0 4 1152 23 54 0 0 chr3 74380842 74380879 -85218904 + AT_rich Low_complexity Low_complexity 1 37 0 4 1152 6412 149 43 7 chr3 74381358 74383282 -85216501 + Lx LINE L1 4677 6648 -6 4 1152 347 330 16 89 chr3 74383536 74383726 -85216057 - B3 SINE B2 -9 186 11 4 1152 2574 227 33 7 chr3 74383738 74383804 -85215979 + L1_Mur2 LINE L1 1989 2054 -3823 4 1152 237 108 0 0 chr3 74383804 74383841 -85215942 + (CA)n Simple_repeat Simple_repeat 1 37 0 4 1152 2574 227 33 7 chr3 74383841 74384463 -85215320 + L1_Mur2 LINE L1 2055 2694 -3183 4 1152 1256 150 18 9 chr3 74384465 74384687 -85215096 + Lx2 LINE L1 6774 6997 0 4 1152 343 272 0 52 chr3 74384911 74385033 -85214750 - RMER20B LTR ERVK -355 161 47 4 1152 1064 204 74 3 chr3 74385053 74385408 -85214375 + L1_Mur2 LINE L1 3790 4223 -1654 4 1152 28229 15 0 3 chr3 74385409 74390408 -85209375 + L1Md_A LINE L1 631 5586 -297 4 1152 8582 19 9 3 chr3 74390408 74391398 -85208385 + L1Md_A LINE L1 5587 6582 0 4 1152 1639 198 51 59 chr3 74391399 74391709 -85208074 + L1_Mur2 LINE L1 4211 4527 -1350 4 1152 1027 161 8 73 chr3 74391709 74391943 -85207840 + Lx2B LINE L1 6777 6995 -5 4 1152 1639 198 51 59 chr3 74391943 74392142 -85207641 + L1_Mur2 LINE L1 4528 4716 -1161 4 1152 21 0 0 0 chr3 74392186 74392207 -85207576 + AT_rich Low_complexity Low_complexity 1 21 0 4 1152 183 353 69 56 chr3 74392984 74393128 -85206655 - MIRc SINE MIR -31 237 92 5 1152 1562 224 26 20 chr3 74393166 74393516 -85206267 - MTC LTR MaLR 0 421 70 5 1152 21 0 0 0 chr3 74393516 74393537 -85206246 + AT_rich Low_complexity Low_complexity 1 21 0 5 1152 5730 160 96 18 chr3 74393645 74394796 -85204987 - MTC-int LTR MaLR -13 1245 6 5 1152 1308 122 0 58 chr3 74394804 74395047 -85204736 - L1_Mur1 LINE L1 -698 5188 4960 5 1152 3219 8 0 39 chr3 74395047 74395429 -85204354 + IAPLTR1_Mm LTR ERVK 1 367 0 5 1152 52813 24 17 2 chr3 74395429 74401810 -85197973 + IAPEz-int LTR ERVK 8 6481 0 5 1152 3219 8 0 39 chr3 74401810 74402192 -85197591 + IAPLTR1_Mm LTR ERVK 1 367 0 5 1152 2434 144 5 7 chr3 74402192 74402624 -85197159 - L1_Mur1 LINE L1 -921 4965 4535 5 1152 378 0 0 0 chr3 74402626 74402668 -85197115 + (TTTA)n Simple_repeat Simple_repeat 4 45 0 5 1152 5716 107 38 9 chr3 74402723 74403599 -85196184 - Lx3_Mus LINE L1 -16 6993 6093 5 1152 223 347 0 26 chr3 74403647 74403724 -85196059 + B4 SINE B4 8 82 -210 5 1152 215 159 0 22 chr3 74403835 74403880 -85195903 + A-rich Low_complexity Low_complexity 1 44 0 5 1152 1434 298 6 20 chr3 74404406 74404906 -85194877 + Lx7 LINE L1 586 1078 -6650 5 1152 445 265 73 0 chr3 74404975 74405111 -85194672 + Lx7 LINE L1 6616 6761 -935 5 1152 408 20 0 0 chr3 74405201 74405250 -85194533 + (TAGA)n Simple_repeat Simple_repeat 2 50 0 5 1152 569 173 19 153 chr3 74405403 74405560 -85194223 + RLTR25B LTR ERVK 636 771 -257 5 1152 500 250 34 48 chr3 74405542 74405689 -85194094 + RLTR25B LTR ERVK 884 1028 0 5 1152 2430 263 58 40 chr3 74405689 74406613 -85193170 + Lx7 LINE L1 6756 7696 0 5 1152 248 323 23 8 chr3 74406919 74407050 -85192733 + L1MC LINE L1 3939 4071 -2075 5 1152 509 306 84 22 chr3 74407922 74408177 -85191606 + B4 SINE B4 14 288 -4 5 1152 465 133 0 0 chr3 74408234 74408309 -85191474 + (GGGA)n Simple_repeat Simple_repeat 4 78 0 5 1152 3401 209 27 12 chr3 74409007 74410173 -85189610 - Lx4B LINE L1 -782 6276 5076 5 1152 518 191 11 3 chr3 74410179 74410287 -85189496 + Lx5 LINE L1 6288 6416 -592 5 1152 24 32 0 0 chr3 74410410 74410441 -85189342 + AT_rich Low_complexity Low_complexity 1 31 0 5 1152 1606 264 48 0 chr3 74410931 74411347 -85188436 - ORR1C2-int LTR MaLR -1073 436 1 5 1152 1013 281 78 21 chr3 74411347 74411678 -85188105 - ORR1C2 LTR MaLR 0 384 35 5 1152 297 213 128 9 chr3 74411978 74412087 -85187696 - Lx9 LINE L1 -7 7637 7516 5 1152 560 57 0 0 chr3 74412859 74412929 -85186854 + B1_Mm SINE Alu 68 137 -10 5 1152 180 0 0 0 chr3 74412937 74412957 -85186826 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 5 1152 250 26 0 49 chr3 74413094 74413135 -85186648 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 5 1152 1936 256 55 104 chr3 74413151 74413533 -85186250 - Lx3A LINE L1 -14 6967 6576 5 1152 3392 182 44 65 chr3 74413533 74414239 -85185544 - RLTR17 LTR ERVK 0 692 2 5 1152 2154 200 44 64 chr3 74414239 74414388 -85185395 - Lx3C LINE L1 -356 6620 6466 5 1152 2002 143 20 14 chr3 74414388 74414742 -85185041 + Lx2 LINE L1 6642 6997 0 5 1152 2154 200 44 64 chr3 74414742 74415185 -85184598 - Lx3C LINE L1 -511 6465 6040 5 1152 23 33 0 0 chr3 74415946 74415976 -85183807 + AT_rich Low_complexity Low_complexity 1 30 0 5 1152 207 0 0 0 chr3 74416301 74416324 -85183459 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 5 1152 717 201 63 5 chr3 74416826 74417031 -85182752 + Lx6 LINE L1 3468 3684 -2196 5 1152 437 134 15 0 chr3 74417035 74417102 -85182681 + ORR1C2 LTR MaLR 1 68 -316 5 1152 3097 114 17 0 chr3 74417381 74417847 -85181936 + L1_Mus4 LINE L1 6161 6634 -2 5 1152 1041 244 98 15 chr3 74417986 74418252 -85181531 + ORR1C2 LTR MaLR 65 352 -32 5 1152 7482 46 0 2 chr3 74418252 74419162 -85180621 + L1Md_T LINE L1 5673 6580 -2 5 1152 2204 257 83 32 chr3 74419178 74419934 -85179849 + ORR1C2-int LTR MaLR 2 1509 0 5 1152 1175 225 115 66 chr3 74419934 74420300 -85179483 + ORR1C2 LTR MaLR 1 384 0 5 1152 1851 212 39 45 chr3 74420300 74420837 -85178946 + Lx6 LINE L1 3684 4217 -1663 5 1152 2413 199 28 23 chr3 74420849 74421416 -85178367 + Lx6 LINE L1 5311 5880 0 5 1152 1602 35 10 0 chr3 74421455 74421657 -85178126 + L1Md_F3 LINE L1 6381 6584 0 5 1152 523 259 71 18 chr3 74421663 74421832 -85177951 + Lx6 LINE L1 6491 6668 -792 5 1152 242 140 23 23 chr3 74421857 74421945 -85177838 + A-rich Low_complexity Low_complexity 3 90 0 5 1152 1358 259 121 19 chr3 74421948 74422423 -85177360 + Lx7 LINE L1 6697 7225 -471 5 1152 225 0 0 0 chr3 74422423 74422448 -85177335 + (TTTG)n Simple_repeat Simple_repeat 1 25 0 5 1152 1358 259 121 19 chr3 74422448 74422492 -85177291 + Lx7 LINE L1 7226 7269 -427 5 1152 561 30 0 0 chr3 74422592 74422659 -85177124 + (TC)n Simple_repeat Simple_repeat 1 67 0 5 1152 2390 95 87 5 chr3 74422807 74423187 -85176596 - IAPLTR2a LTR ERVK 0 411 1 5 1152 5564 37 3 21 chr3 74423189 74423908 -85175875 - IAPEz-int LTR ERVK -2 6479 5774 5 1152 3024 14 0 0 chr3 74423908 74424267 -85175516 - IAPEz-int LTR ERVK -2122 4359 4001 5 1152 6447 50 0 0 chr3 74424265 74425072 -85174711 - IAPEz-int LTR ERVK -3707 2774 1968 5 1152 11563 84 34 75 chr3 74425074 74427012 -85172771 - IAPEz-int LTR ERVK -4616 1865 9 5 1152 2326 103 87 5 chr3 74427013 74427393 -85172390 - IAPLTR2a LTR ERVK 0 411 1 5 1152 282 250 37 106 chr3 74427397 74427558 -85172225 + Lx7 LINE L1 7507 7656 -40 5 1152 411 98 0 0 chr3 74427565 74427626 -85172157 + (CA)n Simple_repeat Simple_repeat 2 62 0 5 1152 1217 230 88 120 chr3 74427628 74428103 -85171680 + RLTR28B LTR ERVL 4 463 -18 5 1152 423 174 0 0 chr3 74430232 74430318 -85169465 + Lx2 LINE L1 6911 6996 -1 5 1152 3492 153 8 7 chr3 74430490 74431080 -85168703 - Lx2 LINE L1 0 6997 6407 5 1152 37 0 0 0 chr3 74431271 74431308 -85168475 + AT_rich Low_complexity Low_complexity 1 37 0 5 1152 1057 314 94 36 chr3 74431460 74432022 -85167761 - Lx9 LINE L1 -290 7354 6760 5 1152 2080 234 60 23 chr3 74432339 74432938 -85166845 - Lx7 LINE L1 -306 7390 6770 5 1152 1806 230 53 55 chr3 74432924 74433415 -85166368 - L1_Mur3 LINE L1 -819 5061 4575 5 1152 714 97 0 0 chr3 74433415 74433528 -85166255 + (TG)n Simple_repeat Simple_repeat 2 114 0 5 1152 1806 230 53 55 chr3 74433528 74433730 -85166053 - L1_Mur3 LINE L1 -1306 4574 4369 5 1152 246 128 0 0 chr3 74433753 74433792 -85165991 + (T)n Simple_repeat Simple_repeat 1 39 0 5 1152 736 186 28 7 chr3 74433854 74433995 -85165788 - B1_Mur4 SINE Alu -1 149 6 5 1152 2094 199 20 4 chr3 74434002 74434511 -85165272 - L1_Mur3 LINE L1 -1530 4350 3834 5 1152 4713 162 21 23 chr3 74434616 74435291 -85164492 - Lx2 LINE L1 -1 6996 6326 5 1152 191 36 36 0 chr3 74435291 74435319 -85164464 + (TGGG)n Simple_repeat Simple_repeat 2 30 0 5 1152 4713 162 21 23 chr3 74435319 74435484 -85164299 - Lx2 LINE L1 -672 6325 6158 5 1152 573 231 0 24 chr3 74435503 74435627 -85164156 - RLTR14 LTR ERV1 -192 190 70 5 1152 1395 208 43 26 chr3 74435805 74436107 -85163676 + MTC LTR MaLR 107 413 -8 5 1152 329 198 0 12 chr3 74436118 74436200 -85163583 + CT-rich Low_complexity Low_complexity 3 83 0 5 1152 229 296 147 127 chr3 74436200 74436252 -85163531 + MamGypLTR1c LTR Gypsy 36 148 -655 5 1152 374 262 79 71 chr3 74436252 74436392 -85163391 - RMER15 LTR ERVL -36 539 399 5 1152 229 296 147 127 chr3 74436392 74436459 -85163324 + MamGypLTR1c LTR Gypsy 149 299 -504 5 1152 315 122 0 0 chr3 74436535 74436584 -85163199 + (A)n Simple_repeat Simple_repeat 1 49 0 5 1152 2465 65 3 12 chr3 74436868 74437197 -85162586 + L1_Mus1 LINE L1 6241 6566 -1 5 1152 1890 199 22 12 chr3 74437246 74437662 -85162121 - RLTR22_Mur LTR ERVK -1097 751 332 5 1152 5808 63 3 4 chr3 74437662 74438413 -85161370 + L1Md_F2 LINE L1 5830 6579 -3 5 1152 678 13 0 0 chr3 74438416 74438495 -85161288 + (TAAA)n Simple_repeat Simple_repeat 2 80 0 5 1152 2721 108 37 0 chr3 74438679 74439086 -85160697 - BGLII_Mus LTR ERVK 0 422 1 5 1152 1861 238 55 24 chr3 74439236 74439731 -85160052 - RLTR12A LTR ERVK -20 548 39 5 1152 1121 75 0 14 chr3 74439733 74439881 -85159902 + B1_Mm SINE Alu 1 146 -1 5 1152 263 52 51 17 chr3 74439881 74439940 -85159843 + (CAAAA)n Simple_repeat Simple_repeat 1 61 0 5 1152 666 359 48 5 chr3 74440690 74441129 -85158654 - Lx8 LINE L1 -232 7241 6784 5 1152 5027 208 57 17 chr3 74441146 74442377 -85157406 + Lx2B LINE L1 5730 6989 -11 5 1152 202 139 23 0 chr3 74442564 74442607 -85157176 + A-rich Low_complexity Low_complexity 5 48 0 5 1152 6978 97 8 5 chr3 74442756 74443737 -85156046 - L1Md_F2 LINE L1 -1 6581 5598 5 1152 21427 93 21 2 chr3 74443726 74447402 -85152381 - L1Md_F2 LINE L1 -1579 4304 556 5 1152 207 0 0 0 chr3 74448162 74448185 -85151598 + (TA)n Simple_repeat Simple_repeat 1 23 0 5 1152 33 45 0 29 chr3 74448510 74448547 -85151236 + AT_rich Low_complexity Low_complexity 1 36 0 5 1152 225 0 0 0 chr3 74448547 74448572 -85151211 + (CA)n Simple_repeat Simple_repeat 2 26 0 5 1152 33 45 0 29 chr3 74448572 74448603 -85151180 + AT_rich Low_complexity Low_complexity 1 31 0 5 1152 22 0 0 0 chr3 74448872 74448894 -85150889 + AT_rich Low_complexity Low_complexity 1 22 0 5 1153 486 0 0 0 chr3 74449361 74449415 -85150368 + (TA)n Simple_repeat Simple_repeat 2 55 0 5 1153 248 219 23 8 chr3 74449893 74450022 -85149761 + CT-rich Low_complexity Low_complexity 3 133 0 5 1153 789 361 51 19 chr3 74450025 74450555 -85149228 - Lx8 LINE L1 -353 7120 6574 5 1153 219 69 0 0 chr3 74450587 74450616 -85149167 + (CAA)n Simple_repeat Simple_repeat 2 30 0 5 1153 837 345 58 23 chr3 74450686 74451173 -85148610 - Lx8 LINE L1 -839 6634 6131 5 1153 999 109 0 0 chr3 74451510 74451647 -85148136 + B1_Mus1 SINE Alu 2 138 -10 5 1153 579 15 0 0 chr3 74451647 74451715 -85148068 + (GAAAA)n Simple_repeat Simple_repeat 2 69 0 5 1153 1479 295 20 20 chr3 74452019 74452570 -85147213 - Lx5 LINE L1 -151 6899 6454 5 1153 1627 284 81 4 chr3 74452568 74453113 -85146670 + Lx5 LINE L1 5816 6402 -648 5 1153 183 114 0 0 chr3 74453195 74453230 -85146553 + (T)n Simple_repeat Simple_repeat 1 35 0 5 1153 262 156 65 0 chr3 74453485 74453562 -85146221 + (TG)n Simple_repeat Simple_repeat 2 83 0 5 1153 1462 157 0 15 chr3 74453945 74454204 -85145579 + Lx2 LINE L1 6740 6994 -3 5 1153 570 275 79 33 chr3 74454488 74454702 -85145081 - Tigger7 DNA MER2_type -2 2489 2266 5 1153 295 342 18 18 chr3 74454688 74454801 -85144982 - Tigger7 DNA MER2_type -2373 118 6 5 1153 321 339 9 0 chr3 74455395 74455507 -85144276 - Lx9 LINE L1 -452 7192 7080 5 1153 23 33 0 0 chr3 74455607 74455637 -85144146 + AT_rich Low_complexity Low_complexity 1 30 0 5 1153 1110 189 76 9 chr3 74456325 74456620 -85143163 - Lx2 LINE L1 0 6997 6768 5 1153 21 0 0 0 chr3 74456734 74456755 -85143028 + AT_rich Low_complexity Low_complexity 1 21 0 5 1153 906 283 44 36 chr3 74456942 74457353 -85142430 - RCHARR1 DNA MER1_type -15 959 546 5 1153 332 59 20 0 chr3 74457536 74457587 -85142196 + (CA)n Simple_repeat Simple_repeat 1 52 0 5 1153 976 281 139 9 chr3 74458303 74458634 -85141149 - ORR1D1 LTR MaLR 0 374 1 5 1153 735 304 79 26 chr3 74458699 74459040 -85140743 + Lx9 LINE L1 6765 7123 -521 5 1153 462 301 72 43 chr3 74459085 74459499 -85140284 + Lx9 LINE L1 7215 7640 -4 5 1153 5379 120 24 1 chr3 74460009 74460840 -85138943 - Lx LINE L1 -6 6648 5799 5 1153 265 266 83 12 chr3 74460867 74460950 -85138833 - PB1D10 SINE Alu -4 123 29 5 1153 23 33 0 0 chr3 74461083 74461113 -85138670 + AT_rich Low_complexity Low_complexity 1 30 0 5 1153 200 224 39 13 chr3 74462084 74462161 -85137622 + (TA)n Simple_repeat Simple_repeat 1 79 0 6 1153 208 192 19 19 chr3 74462104 74462157 -85137626 + (TATATG)n Simple_repeat Simple_repeat 3 55 0 6 1153 487 280 75 56 chr3 74462175 74462481 -85137302 - L1M4 LINE L1 -467 5707 5396 6 1153 244 284 141 39 chr3 74462908 74463036 -85136747 - ORR1D2 LTR MaLR -2 372 232 6 1153 2648 130 98 31 chr3 74463060 74463538 -85136245 + Lx LINE L1 6141 6650 -4 6 1153 534 302 100 6 chr3 74463579 74463749 -85136034 - ORR1D2 LTR MaLR -184 186 1 6 1153 180 376 58 36 chr3 74463967 74464105 -85135678 - L3 LINE CR1 -5 4484 4344 6 1153 409 305 17 8 chr3 74465197 74465316 -85134467 + B3 SINE B2 91 210 -6 6 1153 258 136 0 0 chr3 74465325 74465369 -85134414 + (TAAA)n Simple_repeat Simple_repeat 1 44 0 6 1153 809 204 102 71 chr3 74465538 74465833 -85133950 - Lx7 LINE L1 0 7696 7393 6 1153 328 250 0 0 chr3 74465837 74465897 -85133886 - Lx6 LINE L1 -490 6970 6911 6 1153 961 241 31 27 chr3 74465900 74466160 -85133623 - L1_Mur3 LINE L1 -4 5876 5616 6 1153 2105 223 0 2 chr3 74466141 74466559 -85133224 + Lx7 LINE L1 6116 6532 -1164 6 1153 403 82 0 0 chr3 74466560 74466621 -85133162 + L1_Mus2 LINE L1 6506 6566 0 6 1153 372 321 38 8 chr3 74466674 74466806 -85132977 + Lx7 LINE L1 6521 6656 -1040 6 1153 4349 206 32 25 chr3 74467516 74468509 -85131274 + Lx3C LINE L1 5975 6974 -2 6 1153 735 12 0 0 chr3 74468803 74468887 -85130896 + (TC)n Simple_repeat Simple_repeat 2 85 0 6 1153 192 40 0 0 chr3 74468887 74468911 -85130872 + (TG)n Simple_repeat Simple_repeat 2 26 0 6 1153 1281 165 198 0 chr3 74468915 74469188 -85130595 - RMER6C LTR ERVK -360 330 4 6 1153 258 367 27 73 chr3 74469327 74469477 -85130306 - RSINE1 SINE B4 -14 151 9 6 1153 21 0 0 0 chr3 74469589 74469610 -85130173 + AT_rich Low_complexity Low_complexity 1 21 0 6 1153 25 0 0 0 chr3 74469631 74469656 -85130127 + AT_rich Low_complexity Low_complexity 1 25 0 6 1153 202 135 27 0 chr3 74470328 74470365 -85129418 + (TTG)n Simple_repeat Simple_repeat 2 39 0 6 1153 1880 172 43 13 chr3 74470375 74470751 -85129032 - Lx3B LINE L1 0 6981 6595 6 1153 4236 154 82 28 chr3 74470751 74471606 -85128177 - RLTR13D6 LTR ERVK -1 901 1 6 1153 5907 132 50 1 chr3 74471608 74472818 -85126965 - Lx3B LINE L1 -374 6599 5328 6 1153 289 316 54 77 chr3 74472922 74473136 -85126647 - B3A SINE B2 -2 193 1 6 1153 23 0 0 0 chr3 74474058 74474081 -85125702 + AT_rich Low_complexity Low_complexity 1 23 0 6 1153 236 132 19 19 chr3 74474180 74474234 -85125549 - Lx8 LINE L1 0 7473 7420 6 1153 468 216 16 21 chr3 74474384 74474573 -85125210 - RMER17C LTR ERVK -135 275 88 6 1153 381 323 25 37 chr3 74474891 74475135 -85124648 + L1MC3 LINE L1 5382 5622 -2163 6 1153 241 295 164 15 chr3 74475145 74475407 -85124376 + L1MC3 LINE L1 6063 6363 -1422 6 1153 204 40 0 0 chr3 74475581 74475606 -85124177 + (GA)n Simple_repeat Simple_repeat 1 25 0 6 1153 21 0 0 0 chr3 74475774 74475795 -85123988 + AT_rich Low_complexity Low_complexity 1 21 0 6 1153 234 302 64 73 chr3 74475911 74476115 -85123668 + L1MC3 LINE L1 6580 6781 -1004 6 1153 402 21 0 0 chr3 74476115 74476162 -85123621 + (CATA)n Simple_repeat Simple_repeat 2 48 0 6 1153 266 216 145 54 chr3 74476568 74476734 -85123049 + L1MC3 LINE L1 7202 7382 -403 6 1153 987 135 90 0 chr3 74476936 74477114 -85122669 + B2_Mm2 SINE B2 2 195 0 6 1153 386 260 0 30 chr3 74477129 74477228 -85122555 - L1_Mur3 LINE L1 -6627 1085 990 6 1153 216 86 0 0 chr3 74477230 74477265 -85122518 + (T)n Simple_repeat Simple_repeat 1 35 0 6 1153 246 128 0 0 chr3 74477337 74477376 -85122407 + (TG)n Simple_repeat Simple_repeat 2 40 0 6 1153 1656 101 8 0 chr3 74477397 74477655 -85122128 - L1_Mus4 LINE L1 -7 6629 6370 6 1153 1103 84 0 0 chr3 74478240 74478383 -85121400 - B1_Mus1 SINE Alu -1 147 5 6 1153 927 313 29 98 chr3 74478854 74479240 -85120543 - MTE2b LTR MaLR -1 378 20 6 1153 276 385 75 19 chr3 74479738 74479897 -85119886 - MER77 LTR ERVL -315 292 125 6 1153 1174 320 103 48 chr3 74479953 74480863 -85118920 - Lx9 LINE L1 -30 7614 6655 6 1153 1227 293 89 10 chr3 74481148 74481361 -85118422 - MTD LTR MaLR -20 399 172 6 1153 2350 65 0 3 chr3 74481361 74481668 -85118115 - L1Md_A LINE L1 -3 6579 6274 6 1153 1227 290 92 11 chr3 74481668 74481842 -85117941 - MTD LTR MaLR -248 171 2 6 1153 470 235 84 13 chr3 74481845 74482000 -85117783 - L1_Rod LINE L1 0 5847 5682 6 1153 618 370 7 26 chr3 74483414 74483680 -85116103 + B4 SINE B4 1 259 -33 6 1153 379 161 99 0 chr3 74483686 74483767 -85116016 + Lx3_Mus LINE L1 6913 7001 -8 6 1153 27 29 0 0 chr3 74483767 74483801 -85115982 + AT_rich Low_complexity Low_complexity 1 34 0 6 1153 1029 53 0 0 chr3 74483822 74483954 -85115829 + (GAAAA)n Simple_repeat Simple_repeat 5 136 0 6 1153 22 0 0 0 chr3 74484240 74484262 -85115521 + AT_rich Low_complexity Low_complexity 1 22 0 6 1153 25 65 0 0 chr3 74484626 74484672 -85115111 + AT_rich Low_complexity Low_complexity 1 46 0 6 1153 301 205 162 25 chr3 74484802 74484882 -85114901 - MTB_Mm LTR MaLR -55 352 262 6 1153 1121 82 0 0 chr3 74484932 74485079 -85114704 - B1_Mm SINE Alu 0 147 1 6 1153 1425 53 5 0 chr3 74485097 74485285 -85114498 - L1Md_F2 LINE L1 -12 6570 6382 6 1153 8025 48 6 1 chr3 74485288 74486643 -85113140 - L1Md_F2 LINE L1 0 6582 5223 6 1153 2171 235 21 10 chr3 74486643 74487155 -85112628 - MTC-int LTR MaLR -739 519 2 6 1153 3187 189 20 30 chr3 74487173 74487937 -85111846 + Lx6 LINE L1 4440 5195 -685 6 1153 6807 111 45 3 chr3 74487933 74488952 -85110831 - Lx LINE L1 -6 6648 5587 6 1153 2534 210 80 24 chr3 74489001 74489886 -85109897 + Lx6 LINE L1 5229 6163 -1297 6 1153 707 241 97 0 chr3 74489907 74490092 -85109691 + MTC LTR MaLR 18 228 -191 6 1153 425 282 9 9 chr3 74490466 74490577 -85109206 - L4 LINE RTE -467 1562 1452 6 1153 32 0 0 0 chr3 74491351 74491383 -85108400 + AT_rich Low_complexity Low_complexity 1 32 0 6 1153 385 289 0 10 chr3 74491514 74491612 -85108171 + PB1D9 SINE Alu 24 120 0 6 1153 525 32 0 0 chr3 74491664 74491727 -85108056 + (TA)n Simple_repeat Simple_repeat 1 63 0 6 1153 287 49 24 0 chr3 74491789 74491830 -85107953 + (TA)n Simple_repeat Simple_repeat 1 42 0 6 1153 845 318 51 38 chr3 74491832 74492437 -85107346 - L1_Mur3 LINE L1 -896 4984 4372 6 1153 973 52 8 0 chr3 74492712 74492846 -85106937 + L1_Mus2 LINE L1 6432 6566 0 6 1153 242 279 116 0 chr3 74493041 74493127 -85106656 + PB1 SINE Alu 24 119 -8 6 1153 284 83 21 0 chr3 74493360 74493408 -85106375 + (TG)n Simple_repeat Simple_repeat 2 50 0 6 1153 906 127 0 0 chr3 74493499 74493625 -85106158 + B1_Mus2 SINE Alu 2 127 -20 6 1153 642 26 0 0 chr3 74493757 74493833 -85105950 + (TC)n Simple_repeat Simple_repeat 2 77 0 6 1153 183 162 0 0 chr3 74493833 74493870 -85105913 + CT-rich Low_complexity Low_complexity 3 39 0 6 1153 308 333 0 0 chr3 74493870 74493954 -85105829 + T-rich Low_complexity Low_complexity 3 86 0 6 1153 1599 217 45 28 chr3 74493954 74494052 -85105731 - RMER6C LTR ERVK -243 477 370 6 1153 1044 133 0 0 chr3 74494052 74494232 -85105551 + (TTC)n Simple_repeat Simple_repeat 1 180 0 6 1153 1913 154 27 16 chr3 74494232 74494602 -85105181 - RMER6C LTR ERVK -317 373 1 6 1153 266 357 56 0 chr3 74495221 74495347 -85104436 + B1F1 SINE Alu 1 133 -16 6 1153 793 305 9 5 chr3 74495823 74496034 -85103749 - B3 SINE B2 0 216 5 6 1153 180 0 0 0 chr3 74497126 74497146 -85102637 + (A)n Simple_repeat Simple_repeat 1 20 0 6 1153 22 0 0 0 chr3 74497397 74497419 -85102364 + AT_rich Low_complexity Low_complexity 1 22 0 6 1153 366 42 0 0 chr3 74498308 74498356 -85101427 + (TG)n Simple_repeat Simple_repeat 1 48 0 6 1153 776 234 40 20 chr3 74498450 74498651 -85101132 - Lx7 LINE L1 -515 7181 6977 6 1153 608 242 10 65 chr3 74498646 74498845 -85100938 - L1_Mur3 LINE L1 -967 4913 4726 6 1153 819 185 6 0 chr3 74498861 74499018 -85100765 - L1_Mur3 LINE L1 -1747 4133 3976 6 1153 1590 220 41 85 chr3 74499018 74499507 -85100276 + RLTR1B LTR ERV1 1 512 0 6 1153 1568 250 22 16 chr3 74499512 74500000 -85099783 - L1_Mur3 LINE L1 -1906 3974 3484 6 1153 2880 218 53 94 chr3 74500003 74500351 -85099432 - L1_Mur3 LINE L1 -2400 3480 3179 1 1153 225 0 0 0 chr3 74500351 74500376 -85099407 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 2 1153 2880 218 53 94 chr3 74500376 74501248 -85098535 - L1_Mur3 LINE L1 -2702 3178 2310 1 1153 682 187 161 18 chr3 74501229 74501452 -85098331 - L1_Mur3 LINE L1 -6416 1312 1058 1 1153 1195 256 104 20 chr3 74501444 74501886 -85097897 - L1_Mur3 LINE L1 -6919 809 331 1 1153 1583 212 174 5 chr3 74502268 74502681 -85097102 - RMER6C LTR ERVK 0 690 208 3 1153 1496 263 172 21 chr3 74502696 74502942 -85096841 - RMER20B LTR ERVK -15 612 354 4 1153 432 0 0 0 chr3 74502942 74502990 -85096793 + (TA)n Simple_repeat Simple_repeat 2 49 0 5 1153 1496 263 172 21 chr3 74502990 74503089 -85096694 - RMER20B LTR ERVK -274 353 190 4 1153 2523 52 0 6 chr3 74503089 74503416 -85096367 + L1Md_F2 LINE L1 6258 6582 0 6 1153 1496 263 172 21 chr3 74503416 74503593 -85096190 - RMER20B LTR ERVK -438 189 13 4 1153 563 190 58 33 chr3 74503610 74503730 -85096053 - RMER6C LTR ERVK -567 123 1 3 1153 12914 197 46 72 chr3 74503732 74504466 -85095317 - RMER6-int LTR ERVK -2 3175 2449 3 1153 237 263 0 0 chr3 74504466 74504523 -85095260 - LSU-rRNA_Hsa rRNA rRNA -3202 1833 1777 7 1153 12914 197 46 72 chr3 74504523 74506991 -85092792 - RMER6-int LTR ERVK -2 2448 1 3 1153 1519 227 32 139 chr3 74506997 74507564 -85092219 - RMER6C LTR ERVK -3 687 151 3 1153 21 57 0 0 chr3 74508318 74508353 -85091430 + AT_rich Low_complexity Low_complexity 1 35 0 8 1153 3661 196 5 11 chr3 74508944 74509702 -85090081 - L1_Mm LINE L1 -855 5028 4275 9 1153 4393 138 41 4 chr3 74509709 74510467 -85089316 + Lx2 LINE L1 6211 6996 -1 1 1153 263 359 24 49 chr3 74510664 74510828 -85088955 + RSINE1 SINE B4 4 163 -2 1 1153 691 376 101 36 chr3 74511309 74511866 -85087917 + MER21B LTR ERV1 1 593 -270 1 1153 254 132 19 0 chr3 74511913 74511966 -85087817 + (TG)n Simple_repeat Simple_repeat 2 55 0 1 1153 1033 79 50 0 chr3 74512228 74512368 -85087415 + B1_Mus2 SINE Alu 1 147 0 1 1153 273 98 0 0 chr3 74512368 74512409 -85087374 + (A)n Simple_repeat Simple_repeat 1 41 0 1 1153 23 68 0 0 chr3 74512608 74512652 -85087131 + AT_rich Low_complexity Low_complexity 1 44 0 1 1153 740 221 15 0 chr3 74514082 74514213 -85085570 - ETnERV2-int LTR ERVK -204 7202 7070 1 1153 23 78 0 0 chr3 74514253 74514304 -85085479 + AT_rich Low_complexity Low_complexity 1 51 0 1 1153 23 0 0 0 chr3 74515207 74515230 -85084553 + AT_rich Low_complexity Low_complexity 1 23 0 1 1153 343 335 24 79 chr3 74517580 74517872 -85081911 + L1MEg LINE L1 1194 1469 -4615 2 1153 1018 226 166 11 chr3 74518139 74518488 -85081295 + Lx9 LINE L1 7236 7638 -6 2 1153 2071 143 3 20 chr3 74518736 74519078 -85080705 - ORR1A1 LTR MaLR -8 338 3 2 1153 22 56 0 0 chr3 74519392 74519428 -85080355 + AT_rich Low_complexity Low_complexity 1 36 0 2 1153 21 36 0 0 chr3 74519479 74519507 -85080276 + AT_rich Low_complexity Low_complexity 1 28 0 2 1153 732 283 45 10 chr3 74520237 74520437 -85079346 - B3 SINE B2 -7 209 3 2 1153 4951 259 55 52 chr3 74520529 74521624 -85078159 - Lx7 LINE L1 0 7460 6334 2 1153 3822 144 64 109 chr3 74521624 74522572 -85077211 - RMER17A2 LTR ERVK 0 906 1 2 1153 4951 235 54 28 chr3 74522572 74523674 -85076109 - Lx7 LINE L1 -1352 6344 5197 2 1153 234 0 0 0 chr3 74523674 74523700 -85076083 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 2 1153 2928 222 61 12 chr3 74523700 74523846 -85075937 - Lx7 LINE L1 -684 5196 5042 2 1153 3523 129 1 0 chr3 74523841 74524492 -85075291 - Lx LINE L1 -713 5941 5290 2 1153 32201 78 10 33 chr3 74524494 74526023 -85073760 - L1Md_F2 LINE L1 -2 6580 5288 3 1153 5833 79 28 4 chr3 74526023 74526835 -85072948 - L1Md_F3 LINE L1 -2 6582 5751 3 1153 32201 92 4 54 chr3 74526835 74531717 -85068066 - L1Md_F2 LINE L1 -596 5287 446 3 1153 2053 191 25 2 chr3 74531751 74532198 -85067585 - L1_Mm LINE L1 -585 5298 4842 3 1153 4321 146 6 22 chr3 74532198 74532922 -85066861 + Lx LINE L1 5943 6654 0 3 1153 366 23 0 0 chr3 74532967 74533010 -85066773 + (GA)n Simple_repeat Simple_repeat 1 43 0 3 1153 509 197 15 59 chr3 74533011 74533146 -85066637 - Lx7 LINE L1 -828 5052 4924 2 1153 823 210 45 60 chr3 74533149 74533531 -85066252 - RMER6D LTR ERVK 0 720 394 3 1153 427 330 52 48 chr3 74533547 74533851 -85065932 + RLTR11B LTR ERVK 16 335 -192 3 1153 291 281 41 71 chr3 74533830 74534050 -85065733 + RLTR11B LTR ERVK 210 491 -37 3 1153 2362 176 66 4 chr3 74534093 74534565 -85065218 - RMER6D LTR ERVK -218 502 2 3 1153 2387 202 120 9 chr3 74534565 74534857 -85064926 - Lx7 LINE L1 -957 4923 4617 2 1153 381 75 0 0 chr3 74534857 74534910 -85064873 + (TG)n Simple_repeat Simple_repeat 2 54 0 3 1153 2387 202 120 9 chr3 74534910 74535252 -85064531 - Lx7 LINE L1 -1264 4616 4220 2 1153 1628 97 47 4 chr3 74535259 74535517 -85064266 + MusHAL1 LINE L1 1209 1477 -1235 3 1153 7049 131 18 5 chr3 74535518 74537344 -85062439 + L1_Mus3 LINE L1 4778 6634 -4 4 1153 1303 317 41 18 chr3 74537351 74537861 -85061922 - Lx7 LINE L1 -7143 585 64 2 1153 247 78 19 19 chr3 74537911 74537963 -85061820 + (TTTTTG)n Simple_repeat Simple_repeat 2 53 0 4 1153 1153 41 21 0 chr3 74537966 74538111 -85061672 - B1_Mus1 SINE Alu 0 148 1 4 1153 31 44 0 0 chr3 74538210 74538255 -85061528 + AT_rich Low_complexity Low_complexity 1 45 0 4 1153 464 156 11 0 chr3 74538255 74538345 -85061438 + (TA)n Simple_repeat Simple_repeat 2 92 0 4 1153 27 0 0 0 chr3 74539180 74539207 -85060576 + AT_rich Low_complexity Low_complexity 1 27 0 4 1153 2270 186 13 38 chr3 74539207 74539682 -85060101 - Lx4A LINE L1 -3 7055 6593 4 1153 968 101 7 0 chr3 74539682 74539820 -85059963 + B1_Mus1 SINE Alu 2 140 -8 4 1153 392 43 0 0 chr3 74539822 74539868 -85059915 + L1_Mus1 LINE L1 6121 6166 -401 4 1153 786 11 0 0 chr3 74539868 74539959 -85059824 + (CAAAA)n Simple_repeat Simple_repeat 2 92 0 4 1153 300 100 120 0 chr3 74539961 74540011 -85059772 - Lx4A LINE L1 -459 6599 6544 4 1153 483 79 0 0 chr3 74540012 74540088 -85059695 + L1_Mus3 LINE L1 6561 6636 -2 5 1153 280 238 0 28 chr3 74541729 74541837 -85057946 + T-rich Low_complexity Low_complexity 4 108 0 5 1153 366 42 0 0 chr3 74541837 74541885 -85057898 + (TG)n Simple_repeat Simple_repeat 1 48 0 5 1153 319 369 44 6 chr3 74542295 74542453 -85057330 + RSINE1 SINE B4 2 165 0 5 1153 239 328 84 25 chr3 74544862 74544981 -85054802 + MLT2B3 LTR ERVL 1 126 -428 5 1153 420 150 0 99 chr3 74546314 74546425 -85053358 - L1Md_F2 LINE L1 -2 6580 6481 5 1153 552 275 108 5 chr3 74546609 74546803 -85052980 + B3 SINE B2 3 216 0 5 1153 472 333 0 0 chr3 74547293 74547434 -85052349 - B1_Mur1 SINE Alu -6 143 3 5 1153 339 136 0 33 chr3 74547450 74547511 -85052272 + Lx3C LINE L1 6913 6971 -5 5 1153 1695 72 12 21 chr3 74547533 74547773 -85052010 - L1Md_T LINE L1 0 6582 6345 5 1153 1397 53 0 0 chr3 74547773 74547942 -85051841 + L1Md_A LINE L1 6178 6346 -236 6 1153 1907 53 12 0 chr3 74548182 74548427 -85051356 + L1_Mus1 LINE L1 5860 6107 -460 6 1153 788 118 0 0 chr3 74548427 74548554 -85051229 + L1_Mus1 LINE L1 6440 6566 -1 6 1153 1312 84 28 0 chr3 74548568 74548746 -85051037 + B2_Mm2 SINE B2 2 184 -11 6 1153 28 48 0 0 chr3 74548818 74548860 -85050923 + AT_rich Low_complexity Low_complexity 1 42 0 6 1153 1061 122 0 0 chr3 74548901 74549048 -85050735 + B1_Mus1 SINE Alu 2 148 0 6 1153 476 321 109 48 chr3 74549311 74549668 -85050115 + MER47B DNA MER2_type 33 411 -7 6 1153 648 24 0 0 chr3 74550461 74550545 -85049238 - L1Md_T LINE L1 0 6582 6499 6 1153 207 0 0 0 chr3 74550728 74550751 -85049032 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 6 1153 207 162 0 0 chr3 74551687 74551724 -85048059 + A-rich Low_complexity Low_complexity 1 37 0 6 1153 4032 137 15 58 chr3 74551749 74552571 -85047212 + L1VL4 LINE L1 242 1017 -2542 6 1153 3701 117 32 2 chr3 74552572 74553131 -85046652 + Lx LINE L1 6074 6649 -5 7 1153 21 36 0 0 chr3 74553464 74553492 -85046291 + AT_rich Low_complexity Low_complexity 1 28 0 7 1153 227 194 46 23 chr3 74555129 74555303 -85044480 + (TA)n Simple_repeat Simple_repeat 2 179 0 7 1153 1683 0 0 0 chr3 74555398 74555591 -85044192 - L1Md_T LINE L1 0 6582 6390 7 1153 20442 32 1 0 chr3 74555896 74559033 -85040750 - L1Md_T LINE L1 0 6582 3442 7 1153 465 19 0 0 chr3 74559251 74559305 -85040478 + (CA)n Simple_repeat Simple_repeat 1 54 0 7 1153 434 306 97 48 chr3 74559342 74559507 -85040276 + MTE2a LTR MaLR 5 177 -202 7 1153 954 138 122 5 chr3 74559512 74559701 -85040082 - ORR1C2 LTR MaLR 0 384 174 7 1153 3806 118 85 161 chr3 74559728 74560318 -85039465 - Lx3_Mus LINE L1 0 7009 6380 7 1153 637 135 0 0 chr3 74560318 74560414 -85039369 - BC1_Mm scRNA scRNA -56 96 1 7 1153 233 330 82 36 chr3 74560344 74560454 -85039329 - ZP3AR Satellite Satellite -96 116 2 8 1153 3806 118 85 161 chr3 74560454 74560725 -85039058 - Lx3_Mus LINE L1 0 6379 6089 7 1153 10258 176 32 18 chr3 74560741 74562875 -85036908 - L1_Mur2 LINE L1 -586 5291 3127 8 1153 1087 62 7 33 chr3 74562884 74563035 -85036748 + B1_Mus2 SINE Alu 1 147 0 8 1153 473 0 18 0 chr3 74563036 74563093 -85036690 + (TAA)n Simple_repeat Simple_repeat 3 60 0 8 1153 622 129 0 0 chr3 74563110 74563211 -85036572 - L1VL4 LINE L1 -1468 2091 1991 8 1153 639 199 80 0 chr3 74563223 74563374 -85036409 - RLTR28B LTR ERVL -76 405 243 8 1153 37120 46 0 3 chr3 74563381 74569619 -85030164 - L1Md_T LINE L1 0 6585 267 8 1153 6688 116 32 5 chr3 74569617 74570769 -85029014 - L1VL4 LINE L1 -1544 2015 828 8 1153 495 0 0 0 chr3 74570769 74570824 -85028959 + (TTTC)n Simple_repeat Simple_repeat 2 56 0 8 1153 477 50 0 0 chr3 74570828 74570888 -85028895 + (TG)n Simple_repeat Simple_repeat 1 60 0 8 1153 3741 174 51 13 chr3 74570888 74571496 -85028287 - L1VL4 LINE L1 -5475 827 195 8 1153 4168 120 30 72 chr3 74571496 74572161 -85027622 - Lx3B LINE L1 -950 6023 5379 8 1153 633 203 20 0 chr3 74572161 74572309 -85027474 - Lx2 LINE L1 0 6997 6847 9 1153 4168 130 12 189 chr3 74572309 74572839 -85026944 - Lx3B LINE L1 -508 5378 5013 8 1153 274 191 0 16 chr3 74572845 74572909 -85026874 - L1_Mur3 LINE L1 -2475 3405 3343 9 1153 307 240 21 0 chr3 74573036 74573132 -85026651 + Lx9 LINE L1 7546 7643 -1 9 1153 23 54 0 0 chr3 74573192 74573229 -85026554 + AT_rich Low_complexity Low_complexity 1 37 0 9 1153 32 26 0 0 chr3 74573623 74573662 -85026121 + AT_rich Low_complexity Low_complexity 1 39 0 9 1153 975 111 14 0 chr3 74573672 74573816 -85025967 + B1_Mus1 SINE Alu 2 147 -1 9 1153 1072 88 7 0 chr3 74574310 74574457 -85025326 + B1_Mus1 SINE Alu 1 148 0 9 1153 22 56 0 0 chr3 74574506 74574542 -85025241 + AT_rich Low_complexity Low_complexity 1 36 0 9 1153 237 119 0 0 chr3 74574558 74574600 -85025183 + (CAAA)n Simple_repeat Simple_repeat 4 45 0 9 1153 1147 65 24 12 chr3 74574702 74574872 -85024911 + L1Md_F3 LINE L1 6413 6584 0 9 1153 201 39 0 0 chr3 74575326 74575352 -85024431 + (TTGG)n Simple_repeat Simple_repeat 2 27 0 1 1153 5800 45 19 4 chr3 74575446 74576176 -85023607 + L1Md_F2 LINE L1 5837 6577 -5 1 1153 180 0 0 0 chr3 74576312 74576332 -85023451 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 1 1153 285 214 0 0 chr3 74576332 74576388 -85023395 - Lx5 LINE L1 -19 7031 6976 1 1153 248 123 0 50 chr3 74576481 74576521 -85023262 - L1_Mus3 LINE L1 -7 6631 6592 1 1153 2035 132 26 0 chr3 74576521 74576863 -85022920 - L1_Mus3 LINE L1 -4 6634 6284 1 1153 248 123 0 50 chr3 74576863 74576882 -85022901 - L1_Mus3 LINE L1 -47 6591 6576 1 1153 552 116 0 0 chr3 74577085 74577171 -85022612 + (TG)n Simple_repeat Simple_repeat 1 86 0 1 1153 1155 74 0 0 chr3 74579484 74579700 -85020083 + (TC)n Simple_repeat Simple_repeat 1 216 0 1 1153 307 250 13 13 chr3 74579700 74579777 -85020006 - HAL1-3A_ME LINE L1 -809 2049 1973 1 144 277 372 101 39 chr3 74579829 74580086 -85019697 - B4A SINE B4 -18 274 2 1 1154 234 0 0 0 chr3 74580120 74580146 -85019637 + (A)n Simple_repeat Simple_repeat 1 26 0 1 1154 4611 91 7 93 chr3 74580424 74581245 -85018538 - RMER17A LTR ERVK 0 751 1 1 1154 189 182 0 0 chr3 74582013 74582068 -85017715 + T-rich Low_complexity Low_complexity 1 55 0 1 1154 384 237 134 17 chr3 74583057 74583229 -85016554 + L1MA6 LINE L1 6093 6284 -16 1 1154 226 315 62 9 chr3 74583356 74583468 -85016315 + B3 SINE B2 98 215 -1 1 1154 421 229 119 5 chr3 74584299 74584420 -85015363 + B1_Mur2 SINE Alu 11 147 -2 1 1154 296 271 20 40 chr3 74584739 74584839 -85014944 - MER34A LTR ERV1 -418 153 56 1 1154 23 33 0 0 chr3 74585422 74585452 -85014331 + AT_rich Low_complexity Low_complexity 1 30 0 1 1154 1598 279 84 82 chr3 74586285 74586716 -85013067 - Lx6 LINE L1 -4 7456 7021 1 1154 282 29 0 0 chr3 74586716 74586751 -85013032 + (TTTG)n Simple_repeat Simple_repeat 3 37 0 1 1154 1598 279 84 82 chr3 74586751 74587114 -85012669 - Lx6 LINE L1 -440 7020 6660 1 1154 2076 200 33 10 chr3 74587626 74588107 -85011676 - Lx9 LINE L1 -1 7643 7152 1 1154 3257 163 55 19 chr3 74588204 74588824 -85010959 + RLTR26 LTR ERVK 1 642 0 1 1154 582 135 0 0 chr3 74588878 74588982 -85010801 + (CA)n Simple_repeat Simple_repeat 2 105 0 1 1154 531 0 0 0 chr3 74588982 74589041 -85010742 + (GA)n Simple_repeat Simple_repeat 2 60 0 1 1154 2906 201 39 33 chr3 74589101 74589773 -85010010 - Lx2B LINE L1 0 7000 6325 1 1154 628 291 35 21 chr3 74590306 74590534 -85009249 + RMER1B Other Other 47 386 -680 1 1154 264 286 61 10 chr3 74590518 74590617 -85009166 + RMER1A Other Other 242 345 -685 1 1154 1112 321 61 28 chr3 74590594 74591123 -85008660 + RMER1A Other Other 3 415 -615 1 1154 304 88 35 0 chr3 74592036 74592093 -85007690 + (TAGA)n Simple_repeat Simple_repeat 3 61 0 1 1154 491 229 9 9 chr3 74592778 74592888 -85006895 - B1_Mur3 SINE Alu 0 149 40 1 1154 345 24 0 0 chr3 74594699 74594741 -85005042 + (TG)n Simple_repeat Simple_repeat 1 42 0 1 1154 441 283 108 12 chr3 74595649 74595899 -85003884 + L1MC4a LINE L1 7511 7784 -98 1 1154 692 329 145 42 chr3 74596204 74596874 -85002909 + Charlie24 DNA MER1_type 560 1298 -1152 1 1154 3117 143 23 2 chr3 74596921 74597446 -85002337 + Lx2 LINE L1 5765 6300 -697 1 1154 2371 152 37 12 chr3 74597446 74597851 -85001932 + Lx2 LINE L1 6581 6995 -2 1 1154 464 342 113 33 chr3 74598393 74598729 -85001054 - MLT1A0 LTR MaLR -2 363 1 1 1154 24 0 0 0 chr3 74599124 74599148 -85000635 + AT_rich Low_complexity Low_complexity 1 24 0 1 1154 480 48 0 0 chr3 74599927 74599990 -84999793 + (TTGG)n Simple_repeat Simple_repeat 2 64 0 1 1154 434 188 0 106 chr3 74600043 74600204 -84999579 + RMER17C LTR ERVK 132 275 -135 1 1154 257 309 50 20 chr3 74600281 74600380 -84999403 - MER58D DNA MER1_type 0 386 285 1 1154 28 48 0 0 chr3 74600654 74600696 -84999087 + AT_rich Low_complexity Low_complexity 1 42 0 1 1154 333 100 0 0 chr3 74600770 74600820 -84998963 + (TC)n Simple_repeat Simple_repeat 2 51 0 1 1154 543 90 0 0 chr3 74600821 74600899 -84998884 + (TG)n Simple_repeat Simple_repeat 1 78 0 1 1154 725 212 95 128 chr3 74600902 74601145 -84998638 + ORR1B1 LTR MaLR 41 275 -119 1 1154 1128 254 11 14 chr3 74601145 74601424 -84998359 - Lx9 LINE L1 -242 7402 7125 1 1154 524 293 47 0 chr3 74601869 74602019 -84997764 + LTR50 LTR ERVL 3 159 -636 1 1154 1180 101 0 0 chr3 74602431 74602589 -84997194 + B2_Mm2 SINE B2 3 160 -35 1 1154 194 33 0 62 chr3 74602591 74602623 -84997160 + (TAAA)n Simple_repeat Simple_repeat 3 32 0 1 1154 1098 72 0 0 chr3 74602623 74602761 -84997022 + B1_Mm SINE Alu 1 138 -9 1 1154 474 18 0 0 chr3 74602761 74602816 -84996967 + (CAAA)n Simple_repeat Simple_repeat 2 56 0 1 1154 2709 200 24 6 chr3 74603430 74603511 -84996272 - Lx5 LINE L1 -133 6925 6843 1 1154 273 29 0 0 chr3 74603511 74603545 -84996238 + (CAGG)n Simple_repeat Simple_repeat 1 34 0 1 1154 2709 200 24 6 chr3 74603545 74604007 -84995776 - Lx5 LINE L1 -216 6842 6373 1 1154 7645 39 0 50 chr3 74604005 74605015 -84994768 - L1Md_F3 LINE L1 -1 6583 5625 1 1154 11203 180 25 37 chr3 74605008 74607831 -84991952 - Lx5 LINE L1 -695 6355 3559 1 1154 318 26 0 0 chr3 74608578 74608617 -84991166 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 1154 450 0 0 0 chr3 74608818 74608868 -84990915 + (CA)n Simple_repeat Simple_repeat 2 51 0 1 1154 519 289 216 14 chr3 74609632 74609923 -84989860 - MTD LTR MaLR -39 380 51 1 1154 1205 184 5 9 chr3 74609948 74610168 -84989615 + URR1B DNA MER1_type 7 225 0 1 1154 22 56 0 0 chr3 74610769 74610805 -84988978 + AT_rich Low_complexity Low_complexity 1 36 0 1 1154 741 53 0 0 chr3 74611454 74611548 -84988235 + (TTTC)n Simple_repeat Simple_repeat 2 95 0 1 1154 625 109 235 0 chr3 74611688 74611807 -84987976 + B1_Mus1 SINE Alu 2 148 0 1 1154 319 127 0 31 chr3 74611807 74611872 -84987911 + A-rich Low_complexity Low_complexity 3 65 0 1 1154 1048 259 62 14 chr3 74612310 74612469 -84987314 + ORR1D1 LTR MaLR 1 174 -200 1 1154 216 0 0 0 chr3 74612469 74612493 -84987290 + (CCA)n Simple_repeat Simple_repeat 3 26 0 1 1154 1048 259 62 14 chr3 74612493 74612623 -84987160 + ORR1D1 LTR MaLR 175 304 -70 1 1154 191 273 71 18 chr3 74612737 74612793 -84986990 - L2b LINE L2 -55 3320 3262 1 1154 39 68 0 0 chr3 74614142 74614216 -84985567 + AT_rich Low_complexity Low_complexity 1 74 0 1 1154 234 383 48 35 chr3 74614336 74614536 -84985247 + MIRc SINE MIR 46 250 -18 1 1154 1775 223 62 13 chr3 74614865 74615255 -84984528 + MTC LTR MaLR 1 409 -12 1 1154 514 255 163 0 chr3 74615257 74615410 -84984373 - Lx9 LINE L1 -426 7218 7041 1 1154 1624 253 30 2 chr3 74615407 74615807 -84983976 + Lx9 LINE L1 6623 7033 -611 1 1154 23 33 0 0 chr3 74615807 74615837 -84983946 + AT_rich Low_complexity Low_complexity 1 30 0 1 1154 265 295 0 74 chr3 74616091 74616211 -84983572 + L1M2 LINE L1 5700 5811 -480 1 1154 24 77 0 0 chr3 74616217 74616269 -84983514 + AT_rich Low_complexity Low_complexity 1 52 0 1 1154 185 0 40 0 chr3 74616781 74616806 -84982977 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 1 1154 228 306 13 40 chr3 74618349 74618424 -84981359 - PB1D10 SINE Alu -22 95 23 1 1154 276 30 0 0 chr3 74620229 74620262 -84979521 + (TG)n Simple_repeat Simple_repeat 2 34 0 1 1154 3246 79 14 2 chr3 74621237 74621680 -84978103 + L1_Mus2 LINE L1 6107 6554 -12 1 1154 311 265 83 12 chr3 74621876 74621960 -84977823 - MLT1B LTR MaLR -5 385 296 1 1154 5670 103 8 5 chr3 74621964 74622335 -84977448 + L1_Mur1 LINE L1 4271 4645 -1241 1 1154 189 0 0 0 chr3 74622335 74622356 -84977427 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 1 1154 5670 103 8 5 chr3 74622356 74622851 -84976932 + L1_Mur1 LINE L1 4646 5139 -747 1 1154 437 289 65 56 chr3 74623942 74624197 -84975586 - MLT1A LTR MaLR -4 623 118 1 1154 1949 220 38 8 chr3 74624379 74624778 -84975005 - MTC LTR MaLR -10 411 1 1 1154 338 345 43 65 chr3 74624795 74624981 -84974802 + MTC LTR MaLR 222 403 -18 1 1154 2854 38 0 118 chr3 74626488 74626902 -84972881 - RLTR10B2 LTR ERVK 0 365 1 1 1154 572 0 15 0 chr3 74627306 74627374 -84972409 + (TA)n Simple_repeat Simple_repeat 1 69 0 1 1154 5230 248 39 64 chr3 74628261 74628594 -84971189 - Lx7 LINE L1 0 7696 7368 1 1154 567 43 0 0 chr3 74628594 74628664 -84971119 + (TAGA)n Simple_repeat Simple_repeat 2 71 0 1 1154 5230 248 39 64 chr3 74628664 74629888 -84969895 - Lx7 LINE L1 -329 7367 6179 1 1154 546 16 0 0 chr3 74629893 74629956 -84969827 + (TA)n Simple_repeat Simple_repeat 2 64 0 1 1154 1635 247 77 33 chr3 74629956 74630468 -84969315 - RMER13A LTR ERVK -323 635 1 1 1154 316 219 0 14 chr3 74630468 74630542 -84969241 - L1_Mur3 LINE L1 -459 5421 5349 1 1154 1279 159 18 0 chr3 74630549 74630776 -84969007 - Lx2 LINE L1 -2 6995 6765 1 1154 6654 150 19 12 chr3 74630761 74632388 -84967395 - Lx2 LINE L1 -348 6649 5018 1 1154 4846 215 55 5 chr3 74632381 74633598 -84966185 - L1_Mur3 LINE L1 -520 5360 4083 1 1154 451 173 0 0 chr3 74634221 74634302 -84965481 - L1_Mur3 LINE L1 -1781 4099 4019 1 1154 386 145 0 0 chr3 74634338 74634400 -84965383 + L1_Mur3 LINE L1 3880 3941 -1939 1 1154 371 155 0 0 chr3 74634401 74634459 -84965324 - ORR1A2 LTR MaLR -267 60 3 1 1154 531 212 79 7 chr3 74634459 74634611 -84965172 + L1_Mur3 LINE L1 3841 4003 -1877 1 1154 7748 178 57 14 chr3 74634617 74636219 -84963564 + ORR1A2-int LTR MaLR 293 1963 0 1 1154 1707 174 34 56 chr3 74636223 74636501 -84963282 + ORR1A2 LTR MaLR 5 276 -51 1 1154 5418 45 27 0 chr3 74636501 74637172 -84962611 + L1Md_F2 LINE L1 5893 6581 -1 1 1154 1707 174 34 56 chr3 74637172 74637215 -84962568 + ORR1A2 LTR MaLR 277 319 -8 1 1154 2313 228 79 97 chr3 74637220 74638091 -84961692 - L1_Mur3 LINE L1 -2034 3846 2993 1 1154 180 77 0 0 chr3 74638091 74638117 -84961666 + (TTGG)n Simple_repeat Simple_repeat 2 27 0 1 1154 2313 228 79 97 chr3 74638117 74638255 -84961528 - L1_Mur3 LINE L1 -2888 2992 2855 1 1154 2967 18 0 0 chr3 74638255 74638592 -84961191 + IAPLTR1a_Mm LTR ERVK 1 337 0 1 1154 22051 41 18 14 chr3 74638592 74641327 -84958456 + IAPEz-int LTR ERVK 8 2751 -3730 1 1154 29267 10 1 0 chr3 74641319 74644554 -84955229 + IAPEz-int LTR ERVK 3244 6481 0 1 1154 2957 21 0 0 chr3 74644554 74644891 -84954892 + IAPLTR1a_Mm LTR ERVK 1 337 0 1 1154 1048 232 32 18 chr3 74644893 74645178 -84954605 - L1_Mur3 LINE L1 -3022 2858 2570 1 1154 3162 239 48 46 chr3 74645181 74646494 -84953289 - L1_Mur3 LINE L1 -3548 2332 1016 1 1154 249 57 0 0 chr3 74646502 74646537 -84953246 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1 1154 305 343 40 40 chr3 74646715 74646940 -84952843 + HERVL40-int LTR ERVL 708 932 -4598 1 1154 437 274 117 11 chr3 74647306 74647494 -84952289 + B3 SINE B2 4 211 -5 1 1154 426 212 45 8 chr3 74647517 74647650 -84952133 - Lx9 LINE L1 -3 7641 7504 1 1154 248 217 50 0 chr3 74647992 74648052 -84951731 + MTEb LTR MaLR 2 64 -315 1 1154 842 166 7 0 chr3 74648055 74648206 -84951577 - URR1A DNA MER1_type 0 226 75 2 1154 882 272 13 113 chr3 74648208 74648510 -84951273 + MTEb LTR MaLR 106 377 -2 1 1154 225 0 0 0 chr3 74648524 74648549 -84951234 + (TC)n Simple_repeat Simple_repeat 1 25 0 2 1154 252 257 20 85 chr3 74648549 74648702 -84951081 + RMER10B LTR ERVL 194 336 -62 2 1154 378 0 0 0 chr3 74648714 74648756 -84951027 + (TAAA)n Simple_repeat Simple_repeat 2 43 0 2 1154 369 62 0 0 chr3 74649011 74649059 -84950724 + (TA)n Simple_repeat Simple_repeat 2 49 0 2 1154 4291 142 13 21 chr3 74649318 74650018 -84949765 + L1VL2 LINE L1 99 792 -5543 2 1154 478 135 26 43 chr3 74650018 74650134 -84949649 + Lx LINE L1 6540 6653 -1 2 1154 423 0 0 0 chr3 74650141 74650188 -84949595 + (CA)n Simple_repeat Simple_repeat 2 48 0 2 1154 330 321 78 7 chr3 74650368 74650509 -84949274 + LTR80A LTR ERVL 139 289 -294 2 1154 295 403 28 33 chr3 74652377 74652559 -84947224 - LTR16A LTR ERVL -254 197 17 2 1154 752 280 20 0 chr3 74653121 74653321 -84946462 - Lx7 LINE L1 -608 7088 6885 2 1154 4283 241 93 69 chr3 74653322 74655199 -84944584 - L1_Mur3 LINE L1 -886 4994 3073 2 1154 21 0 0 0 chr3 74655205 74655226 -84944557 + AT_rich Low_complexity Low_complexity 1 21 0 2 1154 3562 210 42 12 chr3 74655272 74655990 -84943793 - Lx5 LINE L1 -2 7048 6310 2 1154 5327 232 99 22 chr3 74655983 74658353 -84941430 - L1_Mur3 LINE L1 -2807 3073 524 2 1154 522 0 0 0 chr3 74658436 74658494 -84941289 + (TC)n Simple_repeat Simple_repeat 2 59 0 2 1154 477 34 0 0 chr3 74658494 74658552 -84941231 + (TG)n Simple_repeat Simple_repeat 2 60 0 2 1154 194 272 191 21 chr3 74660599 74660693 -84939090 - MIR SINE MIR -1 261 152 2 1154 574 333 30 38 chr3 74661060 74661453 -84938330 + L1MA8 LINE L1 5710 6099 -192 2 1154 1577 27 16 0 chr3 74661462 74661650 -84938133 + B2_Mm1t SINE B2 1 191 -2 2 1154 21 0 0 0 chr3 74661777 74661798 -84937985 + AT_rich Low_complexity Low_complexity 1 21 0 2 1154 553 333 132 4 chr3 74661854 74662104 -84937679 - B4 SINE B4 0 292 11 2 1154 551 277 7 20 chr3 74662151 74662302 -84937481 - B1_Mur1 SINE Alu 0 149 1 2 1154 294 45 0 0 chr3 74662929 74662973 -84936810 - L1_Mus1 LINE L1 -1 6566 6523 2 1154 423 0 0 0 chr3 74663404 74663451 -84936332 + (TTA)n Simple_repeat Simple_repeat 2 48 0 2 1154 798 198 357 9 chr3 74663514 74663832 -84935951 - BGLII_B LTR ERVK -13 428 1 2 1154 1127 112 21 0 chr3 74664471 74664659 -84935124 + MusHAL1 LINE L1 227 418 -2294 2 1154 6150 93 20 25 chr3 74664655 74665624 -84934159 + MusHAL1 LINE L1 1123 2086 -626 2 1154 313 213 130 68 chr3 74666406 74666567 -84933216 + RMER10A LTR ERVL 272 442 0 2 1154 261 275 86 21 chr3 74666776 74666869 -84932914 - RMER30 DNA MER1_type -1 201 103 2 1154 661 376 28 0 chr3 74666871 74667118 -84932665 + B4A SINE B4 20 273 -19 2 1154 21 0 0 0 chr3 74667229 74667250 -84932533 + AT_rich Low_complexity Low_complexity 1 21 0 2 1154 272 70 0 23 chr3 74667986 74668030 -84931753 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 2 1154 26 50 0 0 chr3 74668542 74668582 -84931201 + AT_rich Low_complexity Low_complexity 1 40 0 2 1154 523 328 70 0 chr3 74668726 74668927 -84930856 + Lx6 LINE L1 5914 6128 -1332 2 1154 37349 19 0 7 chr3 74668948 74674109 -84925674 + L1Md_A LINE L1 469 5586 -297 2 1154 8745 18 0 0 chr3 74674109 74675105 -84924678 + L1Md_A LINE L1 5587 6582 0 2 1154 980 294 12 80 chr3 74675124 74675245 -84924538 + Lx6 LINE L1 6181 6304 -746 2 1154 2837 46 3 0 chr3 74675245 74675590 -84924193 + ORR1A0 LTR MaLR 1 346 0 2 1154 2318 259 85 56 chr3 74675590 74676429 -84923354 + Lx6 LINE L1 6305 7434 -26 2 1154 22 70 0 0 chr3 74678043 74678086 -84921697 + AT_rich Low_complexity Low_complexity 1 43 0 2 1154 437 133 10 0 chr3 74678766 74678864 -84920919 + (TA)n Simple_repeat Simple_repeat 2 100 0 2 1154 438 20 0 0 chr3 74678892 74678943 -84920840 + (CA)n Simple_repeat Simple_repeat 2 52 0 2 1154 269 267 0 0 chr3 74679506 74679581 -84920202 + B3 SINE B2 142 216 0 2 1154 824 91 8 0 chr3 74679609 74679730 -84920053 - L1_Mm LINE L1 -3616 2267 2146 2 1154 38756 46 6 6 chr3 74679725 74685922 -84913861 - L1Md_T LINE L1 -1 6581 432 2 1154 425 272 142 7 chr3 74685985 74686133 -84913650 - Lx8 LINE L1 -1682 5962 5793 2 1154 331 341 116 60 chr3 74686134 74686583 -84913200 + L1ME1 LINE L1 5623 6096 -83 2 1154 4185 91 0 14 chr3 74687572 74688165 -84911618 - L1Md_F2 LINE L1 -10 6572 5988 2 1154 454 325 132 53 chr3 74689026 74689292 -84910491 + B4A SINE B4 6 292 0 2 1154 666 343 96 4 chr3 74689730 74689979 -84909804 - B4A SINE B4 -20 272 1 2 1154 705 63 0 0 chr3 74690348 74690443 -84909340 + (TG)n Simple_repeat Simple_repeat 2 96 0 2 1154 189 0 0 0 chr3 74691057 74691078 -84908705 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 2 1154 32823 70 1 1 chr3 74691477 74696064 -84903719 + L1Md_F2 LINE L1 904 5587 -299 2 1154 7746 61 2 0 chr3 74696066 74697048 -84902735 + L1Md_F2 LINE L1 5590 6573 -12 2 1154 30559 76 3 11 chr3 74697055 74701328 -84898455 + L1Md_F2 LINE L1 1347 5585 -298 2 1154 7680 68 0 8 chr3 74701329 74702333 -84897450 + L1Md_F2 LINE L1 5587 6582 0 2 1154 683 203 43 24 chr3 74702562 74702769 -84897014 + Lx9 LINE L1 7383 7593 -51 2 1154 21 0 0 0 chr3 74702896 74702917 -84896866 + AT_rich Low_complexity Low_complexity 1 21 0 2 1154 228 237 85 0 chr3 74703015 74703074 -84896709 - RMER1C Other Other -140 1202 1139 2 1154 2259 224 83 15 chr3 74703336 74703866 -84895917 + Lx5 LINE L1 6482 7047 -3 2 1154 585 286 62 6 chr3 74704090 74704252 -84895531 + B3A SINE B2 6 176 -22 2 1154 34 55 0 0 chr3 74704278 74704333 -84895450 + AT_rich Low_complexity Low_complexity 1 55 0 2 1154 328 274 0 102 chr3 74704659 74704777 -84895006 - RMER1C Other Other -766 576 471 2 1154 3166 251 40 18 chr3 74704768 74705586 -84894197 + RMER1C Other Other 468 1303 -39 2 1154 889 297 50 33 chr3 74705637 74705743 -84894040 + MTC LTR MaLR 106 210 -211 2 1154 1106 90 0 14 chr3 74705743 74705890 -84893893 + B1_Mus1 SINE Alu 2 146 -2 2 1154 889 297 50 33 chr3 74705890 74705909 -84893874 + MTC LTR MaLR 211 228 -193 2 1154 720 43 0 0 chr3 74705909 74706001 -84893782 + (GAAA)n Simple_repeat Simple_repeat 2 93 0 2 1154 889 297 50 33 chr3 74706001 74706177 -84893606 + MTC LTR MaLR 229 413 -8 2 1154 3511 151 135 53 chr3 74706679 74707433 -84892350 + RMER21B LTR ERV1 1 816 -26 2 1154 451 193 60 0 chr3 74707435 74707518 -84892265 + RMER21B LTR ERV1 753 840 -2 2 1154 3178 195 29 8 chr3 74707736 74707881 -84891902 - RMER20B LTR ERVK -25 602 454 2 1154 675 0 0 0 chr3 74707881 74707956 -84891827 + (TTC)n Simple_repeat Simple_repeat 3 77 0 2 1154 3178 195 29 8 chr3 74707956 74708400 -84891383 - RMER20B LTR ERVK -174 453 1 2 1154 4174 275 38 20 chr3 74708401 74708499 -84891284 - MERVK26-int LTR ERVK -6 6913 6816 2 1154 213 65 0 0 chr3 74708499 74708530 -84891253 + (TTG)n Simple_repeat Simple_repeat 3 33 0 2 1154 4174 262 69 15 chr3 74708530 74710324 -84889459 - MERVK26-int LTR ERVK -104 6815 4922 2 1154 22 35 0 0 chr3 74710372 74710401 -84889382 + AT_rich Low_complexity Low_complexity 1 29 0 2 1154 454 200 12 0 chr3 74710466 74710546 -84889237 - RMER20B LTR ERVK -546 81 1 2 144 476 285 129 7 chr3 74710810 74711082 -84888701 - L1_Rod LINE L1 -371 5476 5172 2 1155 1806 224 16 6 chr3 74711082 74711445 -84888338 - ORR1B2 LTR MaLR 0 367 1 2 1155 808 252 119 20 chr3 74711480 74711682 -84888101 - RLTR33 LTR ERVK 0 678 457 2 1155 649 188 8 30 chr3 74711662 74711794 -84887989 - RLTR33 LTR ERVK -549 129 1 2 1155 673 201 22 36 chr3 74711888 74712023 -84887760 + RLTR12A LTR ERVK 1 133 -435 2 1155 1100 112 6 0 chr3 74712023 74712184 -84887599 + B2_Mm2 SINE B2 3 164 -31 2 1155 471 101 0 0 chr3 74712184 74712263 -84887520 + (CATA)n Simple_repeat Simple_repeat 2 80 0 2 1155 24692 158 35 24 chr3 74712290 74713555 -84886228 + L1_Mus1 LINE L1 755 2004 -3879 2 1155 1108 83 7 0 chr3 74713555 74713700 -84886083 + B1_Mm SINE Alu 1 146 -1 2 1155 24692 127 41 26 chr3 74713700 74718149 -84881634 + L1_Mus1 LINE L1 2005 6566 -1 2 1155 4157 152 29 1 chr3 74718164 74718851 -84880932 + L1_Mus3 LINE L1 5926 6631 -7 2 1155 219 186 0 0 chr3 74718855 74718898 -84880885 + A-rich Low_complexity Low_complexity 12 54 0 2 1155 1536 209 112 45 chr3 74718898 74719000 -84880783 + RLTR12A LTR ERVK 117 211 -357 2 1155 3016 32 0 0 chr3 74719000 74719346 -84880437 + ORR1A0 LTR MaLR 1 346 0 2 1155 1536 209 112 45 chr3 74719346 74719663 -84880120 + RLTR12A LTR ERVK 212 564 -4 2 1155 2461 203 39 31 chr3 74719702 74720247 -84879536 - ORR1B2-int LTR MaLR -16 1493 945 2 1155 2012 172 125 2 chr3 74720305 74720712 -84879071 - ORR1B2-int LTR MaLR -889 620 164 2 1155 254 245 0 0 chr3 74720733 74720786 -84878997 - ORR1B2-int LTR MaLR -1456 53 1 2 1155 1800 161 70 26 chr3 74720790 74721134 -84878649 - ORR1B2 LTR MaLR -8 359 1 2 1155 1205 299 96 23 chr3 74721136 74722235 -84877548 - L1_Mur3 LINE L1 -907 5236 3991 2 1155 862 188 174 12 chr3 74722276 74722534 -84877249 - Lx9 LINE L1 -1 7643 7344 2 1155 323 244 23 11 chr3 74722530 74722617 -84877166 - Lx9 LINE L1 -1178 6466 6379 2 1155 226 220 0 33 chr3 74722728 74722789 -84876994 + A-rich Low_complexity Low_complexity 2 60 0 2 1155 233 220 52 52 chr3 74722900 74722996 -84876787 + ORR1D-int LTR MaLR 1190 1285 -85 2 1155 1149 310 45 45 chr3 74723016 74723526 -84876257 - Lx7 LINE L1 -594 7102 6593 2 1155 547 302 142 42 chr3 74723521 74724015 -84875768 - L1_Rod LINE L1 -2380 3467 2925 2 1155 2533 163 82 53 chr3 74725970 74726521 -84873262 - RMER2 LTR ERV1 0 567 1 2 1155 10567 65 1 0 chr3 74726552 74727910 -84871873 + L1Md_F2 LINE L1 4228 5586 -297 2 1155 7808 49 6 16 chr3 74727911 74728916 -84870867 + L1Md_F2 LINE L1 5588 6582 0 2 1155 869 74 0 8 chr3 74730227 74730350 -84869433 + (TTTC)n Simple_repeat Simple_repeat 1 122 0 2 1155 318 294 11 21 chr3 74730915 74731009 -84868774 + B2_Mm2 SINE B2 7 99 -96 2 1155 22 56 0 0 chr3 74734488 74734524 -84865259 + AT_rich Low_complexity Low_complexity 1 36 0 2 1155 385 274 168 54 chr3 74735776 74735961 -84863822 + B3 SINE B2 1 206 -10 2 1155 1152 68 0 0 chr3 74735969 74736115 -84863668 - B1_Mm SINE Alu 0 147 2 2 1155 37 0 0 0 chr3 74736124 74736161 -84863622 + AT_rich Low_complexity Low_complexity 1 37 0 2 1155 716 125 4 226 chr3 74736463 74736833 -84862950 - Lx LINE L1 0 6636 6432 2 1155 473 137 23 96 chr3 74736835 74736956 -84862827 - B2_Mm2 SINE B2 -83 115 1 2 1155 624 269 76 16 chr3 74738107 74738292 -84861491 + MTD LTR MaLR 3 198 -221 2 1155 419 278 158 12 chr3 74738306 74738470 -84861313 + MTD LTR MaLR 232 419 0 2 1155 180 0 0 0 chr3 74738701 74738721 -84861062 + (T)n Simple_repeat Simple_repeat 1 20 0 2 1155 2933 130 14 0 chr3 74739972 74740410 -84859373 - RLTR21 LTR ERVK -1128 444 1 2 1155 373 301 114 101 chr3 74740931 74741359 -84858424 + L1M2 LINE L1 5373 5806 -497 2 1155 496 304 64 109 chr3 74741472 74741536 -84858247 + BGLII_B LTR ERVK 86 133 -308 2 1155 1070 102 0 0 chr3 74741536 74741683 -84858100 + B1_Mm SINE Alu 1 147 0 3 1155 496 304 64 109 chr3 74741683 74741925 -84857858 + BGLII_B LTR ERVK 134 377 -64 2 1155 2725 60 0 0 chr3 74741925 74742257 -84857526 - IAPEY3_LTR LTR ERVK 0 332 1 3 1155 496 304 64 109 chr3 74742257 74742307 -84857476 + BGLII_B LTR ERVK 378 427 -14 2 1155 729 291 38 38 chr3 74742320 74742544 -84857239 - MTD LTR MaLR -183 236 17 3 1155 243 0 0 0 chr3 74742544 74742571 -84857212 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3 1155 729 291 38 38 chr3 74742571 74742582 -84857201 - MTD LTR MaLR -403 16 2 3 1155 812 259 48 18 chr3 74742608 74742836 -84856947 - Lx8 LINE L1 -730 6743 6509 3 1155 857 172 17 17 chr3 74742849 74743073 -84856710 + RMER10B LTR ERVL 11 398 0 3 1155 584 291 32 16 chr3 74743077 74743262 -84856521 - Lx8 LINE L1 -977 6496 6309 3 1155 252 0 0 0 chr3 74743270 74743298 -84856485 + (CCAA)n Simple_repeat Simple_repeat 1 28 0 3 1155 663 276 57 43 chr3 74743808 74744107 -84855676 - Lx7 LINE L1 -1786 5910 5608 3 1155 712 274 81 51 chr3 74744112 74744304 -84855479 + Lx8 LINE L1 6892 7085 -388 3 1155 195 69 0 0 chr3 74744304 74744333 -84855450 + (CAAA)n Simple_repeat Simple_repeat 4 32 0 3 1155 712 274 81 51 chr3 74744333 74744436 -84855347 + Lx8 LINE L1 7086 7196 -277 3 1155 238 358 0 0 chr3 74744700 74744795 -84854988 - MIR SINE MIR 0 262 168 3 1155 353 250 12 12 chr3 74744910 74744991 -84854792 - B1_Mur4 SINE Alu -52 98 18 3 1155 21 36 0 0 chr3 74745067 74745095 -84854688 + AT_rich Low_complexity Low_complexity 1 28 0 3 1155 4861 63 0 2 chr3 74745415 74746036 -84853747 - L1Md_F2 LINE L1 0 6582 5963 3 1155 8245 56 1 3 chr3 74746042 74747751 -84852032 - L1Md_F2 LINE L1 -3 6579 4874 3 1155 199 343 137 27 chr3 74747862 74748081 -84851702 + L2a LINE L2 2932 3174 -252 3 1155 278 242 16 0 chr3 74750340 74750402 -84849381 - L1_Rod LINE L1 -176 5671 5609 3 1155 25 51 0 0 chr3 74751305 74751344 -84848439 + AT_rich Low_complexity Low_complexity 1 39 0 3 1155 1017 171 21 5 chr3 74751368 74751556 -84848227 - Lx2 LINE L1 0 6997 6807 3 1155 3205 89 0 34 chr3 74751611 74752078 -84847705 - L1Md_F2 LINE L1 -4 6578 6128 3 1155 23873 84 34 19 chr3 74752078 74755707 -84844076 - L1Md_F2 LINE L1 -1056 4827 1145 3 1155 3066 132 7 0 chr3 74755704 74756158 -84843625 - L1Md_F2 LINE L1 -5680 936 480 3 1155 1513 162 4 8 chr3 74756158 74756413 -84843370 - L1VL1 LINE L1 -6156 266 13 3 1155 668 270 51 6 chr3 74756702 74756877 -84842906 - RMER30 DNA MER1_type -2 200 18 3 1155 192 77 0 0 chr3 74756894 74756920 -84842863 + (TTG)n Simple_repeat Simple_repeat 2 27 0 3 1155 378 0 0 0 chr3 74757659 74757701 -84842082 + (TA)n Simple_repeat Simple_repeat 2 43 0 3 1155 525 16 0 0 chr3 74758123 74758185 -84841598 + (TG)n Simple_repeat Simple_repeat 1 62 0 3 1155 252 86 0 0 chr3 74759139 74759174 -84840609 + (TG)n Simple_repeat Simple_repeat 1 35 0 3 1155 354 306 88 26 chr3 74759633 74759747 -84840036 + RSINE1 SINE B4 43 163 -2 3 1155 6352 14 0 0 chr3 74760104 74760823 -84838960 - L1Md_A LINE L1 0 6582 5864 3 1155 757 214 0 61 chr3 74760830 74760994 -84838789 - RMER6B LTR ERVK 0 461 308 3 1155 8984 161 15 22 chr3 74761003 74762651 -84837132 - MYSERV6-int LTR ERVK -7321 1638 3 3 1155 2135 187 32 47 chr3 74762652 74763118 -84836665 - RMER6B LTR ERVK 0 461 3 3 1155 240 86 0 0 chr3 74763470 74763505 -84836278 + (TG)n Simple_repeat Simple_repeat 2 36 0 3 1155 23 0 0 0 chr3 74763570 74763593 -84836190 + AT_rich Low_complexity Low_complexity 1 23 0 3 1155 1022 61 0 1 chr3 74763611 74763750 -84836033 + L1Md_T LINE L1 5467 5615 -685 3 1155 8312 39 0 0 chr3 74763750 74764744 -84835039 + L1Md_T LINE L1 5587 6580 -2 3 1155 23 0 0 0 chr3 74764838 74764861 -84834922 + AT_rich Low_complexity Low_complexity 1 23 0 3 1155 333 349 58 50 chr3 74765266 74765507 -84834276 + L1M5 LINE L1 4588 4830 -1316 3 1155 333 329 158 17 chr3 74765641 74765882 -84833901 + L1MC LINE L1 5104 5378 -768 3 1155 7572 166 42 12 chr3 74766380 74767790 -84831993 - Lx4A LINE L1 0 7058 5607 3 1155 1011 157 34 10 chr3 74767791 74767997 -84831786 - Lx4A LINE L1 -1102 4775 4565 3 1155 19809 132 95 29 chr3 74767993 74773087 -84826696 - L1Md_F3 LINE L1 -2 6582 1120 3 1155 676 74 54 54 chr3 74773087 74773216 -84826567 - L1Md_F2 LINE L1 -1 6581 6453 3 1155 4405 143 60 22 chr3 74773216 74773785 -84825998 - L1Md_F3 LINE L1 -5967 1119 531 3 1155 5289 67 3 6 chr3 74774102 74774796 -84824987 + L1Md_F2 LINE L1 5890 6581 -1 3 1155 232 359 0 13 chr3 74775346 74775425 -84824358 + PB1D10 SINE Alu 28 105 -12 3 1155 268 229 0 0 chr3 74776376 74776446 -84823337 + (TCTA)n Simple_repeat Simple_repeat 4 73 0 3 1155 730 21 10 10 chr3 74776457 74776554 -84823229 + (TG)n Simple_repeat Simple_repeat 2 98 0 3 1155 7967 46 5 0 chr3 74776927 74777903 -84821880 - L1Md_F3 LINE L1 0 6584 5604 3 1155 381 286 0 69 chr3 74778099 74778287 -84821496 + GA-rich Low_complexity Low_complexity 1 175 0 3 1155 229 206 13 40 chr3 74778349 74778425 -84821358 + T-rich Low_complexity Low_complexity 2 75 0 3 1155 315 339 173 29 chr3 74779538 74779856 -84819927 + ORR1E LTR MaLR 9 372 -7 3 1155 10314 59 46 2 chr3 74781076 74783023 -84816760 - L1Md_F2 LINE L1 -3 6579 4547 3 1155 921 72 26 7 chr3 74783274 74783428 -84816355 - L1_Mus3 LINE L1 -2 6636 6480 3 1155 256 348 21 21 chr3 74783483 74783577 -84816206 - Tigger7 DNA MER2_type -9 2482 2389 3 1155 746 251 42 12 chr3 74783624 74783913 -84815870 + MT2A LTR ERVL 183 533 0 3 1155 375 23 0 0 chr3 74784030 74784074 -84815709 + (CAAAC)n Simple_repeat Simple_repeat 1 44 0 3 1155 180 0 0 0 chr3 74784351 74784371 -84815412 + (TA)n Simple_repeat Simple_repeat 2 21 0 3 1155 529 311 43 39 chr3 74784968 74785175 -84814608 - MTE2a LTR MaLR 0 379 172 3 1155 576 262 49 65 chr3 74785144 74785328 -84814455 + B4 SINE B4 40 220 -72 3 1155 1022 67 30 0 chr3 74785199 74785334 -84814449 + B1_Mus1 SINE Alu 10 148 0 3 1155 729 88 0 0 chr3 74785351 74785453 -84814330 + (GGAA)n Simple_repeat Simple_repeat 3 104 0 3 1155 453 297 62 0 chr3 74785455 74785583 -84814200 - MTE2a LTR MaLR -242 137 2 3 1155 459 0 0 0 chr3 74786160 74786211 -84813572 + (A)n Simple_repeat Simple_repeat 1 51 0 3 1155 242 312 218 9 chr3 74786391 74786611 -84813172 - Lx8 LINE L1 -9 7464 7199 3 1155 1850 288 22 12 chr3 74786830 74787333 -84812450 - MERVK26-int LTR ERVK -2 6917 6410 3 1155 1180 331 31 9 chr3 74787384 74787832 -84811951 - MERVK26-int LTR ERVK -619 6300 5843 3 1155 1365 341 25 24 chr3 74788447 74789117 -84810666 - Lx8 LINE L1 -479 6994 6324 3 1155 1325 282 41 0 chr3 74790179 74790495 -84809288 - Lx6 LINE L1 -338 7122 6794 3 1155 2148 227 67 32 chr3 74790493 74791058 -84808725 - Lx9 LINE L1 -497 7147 6563 3 1155 1182 254 132 57 chr3 74791059 74791498 -84808285 + Lx9 LINE L1 7135 7606 -38 3 1155 183 80 0 0 chr3 74791555 74791580 -84808203 + (TA)n Simple_repeat Simple_repeat 2 26 0 3 1155 1563 132 69 90 chr3 74791733 74792066 -84807717 + ORR1A3 LTR MaLR 1 326 0 3 1155 390 21 0 0 chr3 74792187 74792234 -84807549 + (CA)n Simple_repeat Simple_repeat 2 48 0 3 1155 263 286 143 0 chr3 74792389 74792466 -84807317 + RMER1C Other Other 450 537 -805 3 1155 434 18 0 18 chr3 74792642 74792698 -84807085 + (CA)n Simple_repeat Simple_repeat 2 56 0 3 1155 274 91 36 0 chr3 74792752 74792807 -84806976 + (TTTTG)n Simple_repeat Simple_repeat 2 58 0 3 1155 261 83 0 0 chr3 74793784 74793820 -84805963 + (GAAAA)n Simple_repeat Simple_repeat 3 38 0 3 1155 235 219 13 52 chr3 74794304 74794381 -84805402 + A-rich Low_complexity Low_complexity 2 75 0 3 1155 546 91 0 0 chr3 74794629 74794706 -84805077 + (GA)n Simple_repeat Simple_repeat 2 78 0 3 1155 286 389 24 43 chr3 74795195 74795359 -84804424 + B4A SINE B4 34 194 -98 3 1155 210 256 0 0 chr3 74795395 74795438 -84804345 + GA-rich Low_complexity Low_complexity 2 44 0 3 1155 1312 85 21 11 chr3 74795576 74795767 -84804016 - B2_Mm2 SINE B2 -1 194 2 3 1155 239 308 0 15 chr3 74796004 74796070 -84803713 - MLT1C LTR MaLR 0 467 403 3 1155 4676 203 42 21 chr3 74796101 74797332 -84802451 + L1_Mur3 LINE L1 2199 3455 -2425 3 1155 4630 202 45 21 chr3 74797334 74798495 -84801288 + L1_Mur3 LINE L1 3881 5069 -811 3 1155 2011 239 16 58 chr3 74798491 74798992 -84800791 + Lx7 LINE L1 6333 6812 -884 3 1155 321 284 32 0 chr3 74798988 74799083 -84800700 + Lx7 LINE L1 7261 7358 -338 3 1155 906 202 125 86 chr3 74799175 74799330 -84800453 + Lx7 LINE L1 7372 7549 -147 3 1155 204 40 0 0 chr3 74799330 74799355 -84800428 + (TTTTA)n Simple_repeat Simple_repeat 4 28 0 3 1155 906 202 125 86 chr3 74799355 74799502 -84800281 + Lx7 LINE L1 7550 7686 -10 3 1155 243 0 0 0 chr3 74799540 74799567 -84800216 + (TG)n Simple_repeat Simple_repeat 2 28 0 3 1155 339 281 211 77 chr3 74799597 74799844 -84799939 - MLT1C LTR MaLR -128 339 60 3 1155 1742 167 7 0 chr3 74799844 74800138 -84799645 - Lx LINE L1 -409 6245 5950 3 1155 2086 179 37 5 chr3 74800138 74800547 -84799236 + Lx2B LINE L1 6577 6998 -2 3 1155 24 0 0 0 chr3 74800784 74800808 -84798975 + AT_rich Low_complexity Low_complexity 1 24 0 3 1155 212 131 21 21 chr3 74802840 74802887 -84796896 + A-rich Low_complexity Low_complexity 2 48 0 3 1155 3028 220 73 26 chr3 74802981 74803705 -84796078 + RMER1B Other Other 213 1028 -38 3 1155 841 308 151 11 chr3 74804224 74804588 -84795195 - MTD LTR MaLR 0 419 5 3 1155 4618 41 2 0 chr3 74804792 74805349 -84794434 - L1Md_T LINE L1 -1 6581 6024 3 1155 189 226 0 0 chr3 74805947 74806000 -84793783 + A-rich Low_complexity Low_complexity 1 53 0 3 1155 250 329 76 31 chr3 74806420 74806643 -84793140 - L1MA7 LINE L1 -151 6140 5908 3 1155 37 62 0 0 chr3 74806748 74806813 -84792970 + AT_rich Low_complexity Low_complexity 1 65 0 3 1155 279 264 23 19 chr3 74806891 74807018 -84792765 - L1MA7 LINE L1 -411 5757 5630 3 1155 681 352 59 5 chr3 74807047 74807452 -84792331 + L1M3 LINE L1 4520 4946 -1194 3 1155 346 197 7 7 chr3 74807464 74807602 -84792181 + (TA)n Simple_repeat Simple_repeat 2 139 0 3 1155 366 330 18 0 chr3 74807773 74807882 -84791901 - PB1D10 SINE Alu 0 117 7 3 1155 7116 135 7 3 chr3 74808218 74809740 -84790043 - Lx LINE L1 -7 6647 5121 3 1155 7563 158 4 1 chr3 74809733 74811068 -84788715 + L1_Mur2 LINE L1 3521 4858 -1019 3 1155 1548 46 5 0 chr3 74811279 74811473 -84788310 + L1Md_T LINE L1 6387 6581 -1 3 1155 585 265 89 15 chr3 74811858 74812145 -84787638 - Lx8 LINE L1 -1641 5832 5522 3 1155 5699 68 0 0 chr3 74812194 74812918 -84786865 - L1_Mus1 LINE L1 0 6567 5844 3 1155 518 294 82 55 chr3 74812987 74813279 -84786504 - Lx8 LINE L1 -134 7339 7040 3 1155 747 292 22 8 chr3 74813230 74813482 -84786301 + L1Md_F2 LINE L1 5554 5857 -725 3 1155 202 269 19 0 chr3 74814160 74814212 -84785571 + CT-rich Low_complexity Low_complexity 3 55 0 3 1155 1038 103 29 0 chr3 74814241 74814415 -84785368 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 4 1155 235 396 0 7 chr3 74815359 74815499 -84784284 + MIR SINE MIR 23 161 -101 4 1155 182 322 126 0 chr3 74815620 74815707 -84784076 - L2b LINE L2 0 3375 3278 4 1155 351 259 40 61 chr3 74815916 74816064 -84783719 - RLTR12B LTR ERVK -337 191 47 4 1155 180 250 33 16 chr3 74816246 74816307 -84783476 - L2 LINE L2 -831 2588 2527 4 1155 405 0 0 0 chr3 74817273 74817318 -84782465 + (TG)n Simple_repeat Simple_repeat 2 46 0 4 1155 2430 42 26 0 chr3 74819650 74819962 -84779821 - L1Md_F3 LINE L1 -2 6582 6263 4 1155 1604 112 0 16 chr3 74820325 74820578 -84779205 + L1Md_F2 LINE L1 6334 6582 0 4 1155 1773 199 73 44 chr3 74820786 74821222 -84778561 + Lx4B LINE L1 6610 7058 0 4 1155 348 24 0 0 chr3 74821227 74821268 -84778515 + (GA)n Simple_repeat Simple_repeat 2 42 0 4 1155 194 62 31 0 chr3 74821390 74821422 -84778361 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 4 1155 349 223 60 60 chr3 74821639 74821739 -84778044 + B4 SINE B4 73 172 -120 4 1155 414 0 0 0 chr3 74821881 74821927 -84777856 + (CA)n Simple_repeat Simple_repeat 2 47 0 4 1155 1670 111 4 4 chr3 74822773 74823027 -84776756 - L1_Mus2 LINE L1 -2 6564 6311 4 1155 854 286 56 136 chr3 74823156 74823338 -84776445 + MTE2a LTR MaLR 1 162 -217 4 1155 2537 52 64 6 chr3 74823338 74823683 -84776100 + L1Md_F3 LINE L1 6217 6581 -3 4 1155 854 286 56 136 chr3 74823683 74823912 -84775871 + MTE2a LTR MaLR 163 379 0 4 1155 1101 254 75 37 chr3 74825068 74825416 -84774367 + ORR1D2 LTR MaLR 2 362 -8 4 1155 180 111 0 0 chr3 74825907 74825934 -84773849 + (CATGT)n Simple_repeat Simple_repeat 3 29 0 4 1155 370 246 31 78 chr3 74826125 74826253 -84773530 + MTEb LTR MaLR 256 377 -2 4 1155 300 264 0 27 chr3 74826339 74826413 -84773370 - B1F SINE Alu 0 149 78 4 1155 242 294 19 56 chr3 74826908 74827016 -84772767 + RMER15 LTR ERVL 459 562 -13 4 1155 405 237 112 53 chr3 74827458 74827645 -84772138 + L1_Mur3 LINE L1 311 508 -7220 4 1155 273 104 44 15 chr3 74827669 74827737 -84772046 + (CAAA)n Simple_repeat Simple_repeat 2 71 0 4 1155 3385 210 32 29 chr3 74827765 74829191 -84770592 + L1_Mur3 LINE L1 553 1982 -3898 4 1155 7081 114 26 5 chr3 74829181 74830449 -84769334 + Lx LINE L1 5368 6654 0 4 1155 2051 227 42 24 chr3 74830472 74831046 -84768737 + L1_Mur3 LINE L1 2006 2589 -3291 4 1155 604 151 31 158 chr3 74831039 74831267 -84768516 + L1_Mur3 LINE L1 2745 2943 -2937 4 1155 526 125 0 51 chr3 74831295 74831413 -84768370 - L1Md_F2 LINE L1 0 6582 6471 4 1155 22 70 0 0 chr3 74831427 74831470 -84768313 + AT_rich Low_complexity Low_complexity 1 43 0 4 1155 6302 52 1 4 chr3 74831647 74832440 -84767343 + L1Md_F2 LINE L1 5792 6582 0 4 1155 265 279 59 0 chr3 74832445 74832513 -84767270 + B1F1 SINE Alu 4 75 -74 4 1155 1951 239 87 59 chr3 74832513 74833090 -84766693 - RMER19C LTR ERVK -18 593 1 4 1155 2887 212 93 10 chr3 74833090 74833248 -84766535 + L1_Mur3 LINE L1 2939 3123 -2757 4 1155 215 61 30 0 chr3 74833248 74833281 -84766502 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 4 1155 2887 212 93 10 chr3 74833281 74833918 -84765865 + L1_Mur3 LINE L1 3124 3800 -2080 4 1155 270 0 0 0 chr3 74833918 74833948 -84765835 + (TA)n Simple_repeat Simple_repeat 2 31 0 4 1155 610 13 25 0 chr3 74834006 74834085 -84765698 + (TC)n Simple_repeat Simple_repeat 1 81 0 4 1155 9079 134 118 11 chr3 74834300 74836635 -84763148 + L1_Mur1 LINE L1 245 3300 -2586 4 1155 1267 42 6 12 chr3 74836635 74836804 -84762979 + L1Md_F3 LINE L1 6402 6569 -15 4 1155 9079 101 69 8 chr3 74836804 74836853 -84762930 + L1_Mur1 LINE L1 3301 3342 -2544 4 1155 1506 126 29 36 chr3 74836853 74837132 -84762651 + Lx3_Mus LINE L1 6725 7001 -8 4 1155 6168 195 203 15 chr3 74837132 74837163 -84762620 + L1_Mur1 LINE L1 3334 3358 -2519 4 1155 1310 233 107 0 chr3 74837171 74837497 -84762286 + RMER6D LTR ERVK 339 699 -21 4 1155 295 154 62 0 chr3 74837497 74837562 -84762221 - RLTR25B LTR ERVK 0 1028 960 4 1155 7110 150 13 20 chr3 74837562 74839650 -84760133 + Lx LINE L1 4586 6654 0 4 1155 1331 279 50 27 chr3 74839659 74840098 -84759685 + Lx5 LINE L1 5908 6356 -694 4 1155 32 0 0 0 chr3 74840223 74840255 -84759528 + AT_rich Low_complexity Low_complexity 1 32 0 4 1155 204 143 0 0 chr3 74841006 74841048 -84758735 + (GA)n Simple_repeat Simple_repeat 2 43 0 4 1155 615 299 142 8 chr3 74841107 74841353 -84758430 - MLT2D LTR ERVL -124 290 12 4 1156 246 116 0 0 chr3 74842465 74842508 -84757275 + (TTTG)n Simple_repeat Simple_repeat 1 43 0 4 1156 1154 68 0 0 chr3 74843248 74843394 -84756389 + B1_Mm SINE Alu 2 147 0 4 1156 453 327 90 10 chr3 74844340 74844541 -84755242 - ID_B1 SINE B4 -5 219 3 4 1156 546 16 0 0 chr3 74844981 74845044 -84754739 + (GAAA)n Simple_repeat Simple_repeat 2 64 0 4 1156 327 349 23 23 chr3 74845502 74845631 -84754152 + B1F SINE Alu 20 148 -1 4 1156 208 342 0 12 chr3 74846033 74846113 -84753670 + CT-rich Low_complexity Low_complexity 2 80 0 4 1156 32854 76 12 1 chr3 74846175 74851756 -84748027 - L1Md_F2 LINE L1 -1 6581 934 4 1156 954 229 223 22 chr3 74851925 74852292 -84747491 + MT2A LTR ERVL 3 443 -90 4 1156 241 196 38 38 chr3 74852480 74852533 -84747250 + Lx7 LINE L1 6664 6716 -980 4 1156 375 31 62 0 chr3 74852762 74852826 -84746957 + (CAAAA)n Simple_repeat Simple_repeat 2 69 0 4 1156 215 333 24 24 chr3 74852989 74853072 -84746711 + B4 SINE B4 1 83 -209 4 1156 1053 101 0 25 chr3 74853395 74853558 -84746225 - MT2B LTR ERVL -440 161 3 4 1156 731 279 140 29 chr3 74854014 74854457 -84745326 + RLTR12B LTR ERVK 12 503 -25 4 1156 50 0 0 0 chr3 74855491 74855541 -84744242 + AT_rich Low_complexity Low_complexity 1 50 0 4 1156 633 164 41 49 chr3 74855662 74855784 -84743999 - B1_Mur4 SINE Alu -4 146 26 4 1156 1256 276 25 77 chr3 74855784 74856228 -84743555 + Lx5 LINE L1 6630 7050 0 4 1156 585 162 25 41 chr3 74856601 74856723 -84743060 + PB1D9 SINE Alu 1 120 0 4 1156 526 51 13 13 chr3 74856724 74856803 -84742980 + (GGAA)n Simple_repeat Simple_repeat 2 80 0 4 1156 345 24 0 0 chr3 74856810 74856852 -84742931 + (TG)n Simple_repeat Simple_repeat 2 43 0 4 1156 796 287 22 13 chr3 74856942 74857168 -84742615 - B4 SINE B4 -53 239 12 4 1156 195 42 0 0 chr3 74857516 74857540 -84742243 + (TA)n Simple_repeat Simple_repeat 1 24 0 4 1156 318 26 0 0 chr3 74857591 74857630 -84742153 + (TTAA)n Simple_repeat Simple_repeat 2 40 0 4 1156 2550 62 0 0 chr3 74857880 74858205 -84741578 + L1_Mus1 LINE L1 6243 6567 0 4 1156 1885 260 55 17 chr3 74858240 74858717 -84741066 - Lx6 LINE L1 -11 7449 6955 4 1156 1546 80 0 0 chr3 74859412 74859624 -84740159 - L1_Mus1 LINE L1 -474 6093 5882 4 1156 3682 69 2 0 chr3 74859624 74860090 -84739693 + L1_Mus1 LINE L1 6101 6567 0 4 1156 719 284 51 25 chr3 74861246 74861521 -84738262 - B4A SINE B4 -10 282 1 4 1156 261 0 0 0 chr3 74863630 74863659 -84736124 + (T)n Simple_repeat Simple_repeat 1 29 0 4 1156 2357 223 26 44 chr3 74864577 74865122 -84734661 + Lx6 LINE L1 6921 7455 -5 4 1156 470 321 30 6 chr3 74865620 74865789 -84733994 + Lx8 LINE L1 6958 7130 -343 4 1156 1326 251 144 0 chr3 74866028 74866362 -84733421 + MTD LTR MaLR 10 391 -28 4 1156 13630 151 79 86 chr3 74866749 74868066 -84731717 + Lx LINE L1 756 1800 -4083 4 1156 4683 55 12 5 chr3 74868066 74868670 -84731113 + L1Md_F2 LINE L1 5975 6582 0 4 1156 13630 174 97 119 chr3 74868670 74870910 -84728873 + Lx LINE L1 1801 4183 -2471 4 1156 246 348 24 55 chr3 74870910 74871074 -84728709 + MLT1E1 LTR MaLR 216 374 -280 4 1156 13630 174 97 119 chr3 74871074 74873393 -84726390 + Lx LINE L1 4184 6652 -2 4 1156 23 0 0 0 chr3 74873403 74873426 -84726357 + AT_rich Low_complexity Low_complexity 1 23 0 4 1156 535 336 158 9 chr3 74873691 74873913 -84725870 + B4A SINE B4 28 282 -10 4 1156 465 19 0 0 chr3 74873952 74874006 -84725777 + (CA)n Simple_repeat Simple_repeat 1 54 0 4 1156 237 135 0 0 chr3 74874216 74874268 -84725515 + (A)n Simple_repeat Simple_repeat 1 52 0 4 1156 318 298 149 24 chr3 74874679 74874975 -84724808 + L1MB3 LINE L1 5850 6182 -1 4 1156 796 138 38 6 chr3 74875313 74875473 -84724310 + Lx3_Mus LINE L1 6836 7000 -9 4 1156 27 29 0 0 chr3 74875840 74875874 -84723909 + AT_rich Low_complexity Low_complexity 1 34 0 4 1156 947 184 86 14 chr3 74875982 74876192 -84723591 - URR1A DNA MER1_type 0 226 2 4 1156 468 271 0 20 chr3 74876532 74876628 -84723155 + B1F SINE Alu 1 94 -55 4 1156 2135 191 19 30 chr3 74876628 74876950 -84722833 - MTC LTR MaLR 0 421 108 4 1156 333 130 0 61 chr3 74876950 74877032 -84722751 + Lx2 LINE L1 6921 6997 0 4 1156 2135 191 19 30 chr3 74877032 74877135 -84722648 - MTC LTR MaLR -314 107 2 4 1156 591 291 80 20 chr3 74878490 74878690 -84721093 - Lx6 LINE L1 -337 7123 6912 4 1156 433 265 0 57 chr3 74878764 74878888 -84720895 + Lx6 LINE L1 7137 7253 -207 4 1156 29 0 0 0 chr3 74879479 74879508 -84720275 + AT_rich Low_complexity Low_complexity 1 29 0 4 1156 263 339 139 88 chr3 74879616 74880004 -84719779 - MLT1A1 LTR MaLR 0 408 1 4 1156 293 241 12 24 chr3 74881893 74881950 -84717833 + (TA)n Simple_repeat Simple_repeat 1 57 0 4 1156 227 79 26 0 chr3 74881950 74881988 -84717795 + (CA)n Simple_repeat Simple_repeat 2 40 0 4 1156 293 241 12 24 chr3 74881988 74882015 -84717768 + (TA)n Simple_repeat Simple_repeat 2 28 0 4 1156 200 35 35 0 chr3 74883671 74883700 -84716083 + (GA)n Simple_repeat Simple_repeat 2 31 0 4 1156 284 260 0 0 chr3 74883733 74883810 -84715973 + L1MC1 LINE L1 5360 5436 -908 4 1156 879 288 62 54 chr3 74883890 74884242 -84715541 + ORR1E LTR MaLR 1 355 -4 4 1156 301 309 7 35 chr3 74884245 74884389 -84715394 + L1MC1 LINE L1 5689 5828 -505 4 1156 235 370 0 0 chr3 74884390 74884509 -84715274 + L1MC1 LINE L1 6200 6318 -15 4 1156 30 27 0 0 chr3 74885344 74885381 -84714402 + AT_rich Low_complexity Low_complexity 1 37 0 4 1156 372 340 10 0 chr3 74886391 74886491 -84713292 + RSINE1 SINE B4 35 135 -30 4 1156 450 0 0 0 chr3 74886500 74886550 -84713233 + (CA)n Simple_repeat Simple_repeat 2 51 0 4 1156 366 91 0 0 chr3 74887702 74887757 -84712026 + (CA)n Simple_repeat Simple_repeat 2 56 0 4 1156 26 98 0 0 chr3 74887757 74887839 -84711944 + AT_rich Low_complexity Low_complexity 1 82 0 5 1156 316 131 14 14 chr3 74887844 74887914 -84711869 + (TA)n Simple_repeat Simple_repeat 2 71 0 5 1156 22 70 0 0 chr3 74888483 74888526 -84711257 + AT_rich Low_complexity Low_complexity 1 43 0 5 1156 211 286 13 25 chr3 74890970 74891049 -84708734 + (TATATG)n Simple_repeat Simple_repeat 1 78 0 5 1156 558 340 27 36 chr3 74891083 74891303 -84708480 - B4 SINE B4 -53 239 22 5 1156 950 319 105 53 chr3 74891349 74891919 -84707864 + Lx8 LINE L1 6693 7292 -181 5 1156 754 178 0 6 chr3 74892519 74892683 -84707100 + Lx5 LINE L1 1224 1386 -4491 5 1156 2240 142 20 8 chr3 74892716 74893114 -84706669 + Lx5 LINE L1 4519 4921 -956 5 1156 1272 118 21 0 chr3 74893114 74893301 -84706482 + B2_Mm2 SINE B2 1 191 -4 5 1156 29 0 0 0 chr3 74893324 74893353 -84706430 + AT_rich Low_complexity Low_complexity 1 29 0 5 1156 8696 19 0 0 chr3 74893353 74894444 -84705339 - L1Md_A LINE L1 -3 6579 5489 5 1156 5796 207 35 9 chr3 74894443 74896521 -84703262 + Lx5 LINE L1 4914 7050 0 5 1156 47 78 0 0 chr3 74896522 74896625 -84703158 + AT_rich Low_complexity Low_complexity 1 103 0 5 1156 2392 203 126 34 chr3 74898363 74898792 -84700991 + MYSERV16_I-int LTR ERVK 1501 1944 -382 5 1156 4645 36 0 0 chr3 74898792 74899342 -84700441 + L1Md_A LINE L1 6033 6582 0 5 1156 2392 203 126 34 chr3 74899342 74899667 -84700116 + MYSERV16_I-int LTR ERVK 1945 2324 -2 5 1156 523 310 72 34 chr3 74899687 74899924 -84699859 + RLTR16 LTR ERVK 32 277 -228 5 1156 280 315 64 8 chr3 74900512 74900707 -84699076 - L2a LINE L2 -364 3055 2848 5 1156 28718 69 13 2 chr3 74900990 74905547 -84694236 - L1Md_F2 LINE L1 -5 6577 1967 5 1156 248 320 31 16 chr3 74905747 74905874 -84693909 + L1M5 LINE L1 5778 5906 -334 5 1156 492 209 54 18 chr3 74907265 74907377 -84692406 + MTC LTR MaLR 298 413 -8 5 1156 1501 293 24 52 chr3 74908165 74908382 -84691401 - MTC LTR MaLR -8 413 192 5 1156 456 19 0 0 chr3 74908382 74908435 -84691348 + (TTTA)n Simple_repeat Simple_repeat 4 56 0 5 1156 1501 293 24 52 chr3 74908435 74908642 -84691141 - MTC LTR MaLR -230 191 2 5 1156 541 260 80 115 chr3 74908819 74909158 -84690625 + ORR1E LTR MaLR 32 358 -1 5 1156 241 345 46 0 chr3 74910022 74910109 -84689674 - B1_Mur1 SINE Alu -41 108 18 5 1156 5663 245 74 77 chr3 74910689 74911856 -84687927 + Lx7 LINE L1 3148 4429 -1451 5 1156 3184 93 2 0 chr3 74911856 74912288 -84687495 - L1_Mus1 LINE L1 0 6567 6135 5 1156 5663 245 74 77 chr3 74912288 74913770 -84686013 + Lx7 LINE L1 4430 5793 -87 5 1156 2377 113 117 7 chr3 74913770 74914196 -84685587 - IAPLTR2_Mm LTR ERVK -2 473 1 5 1156 5663 231 67 24 chr3 74914196 74914733 -84685050 + Lx7 LINE L1 5794 6378 -1318 5 1156 203 299 15 0 chr3 74915412 74915479 -84684304 + (TA)n Simple_repeat Simple_repeat 2 69 0 5 1156 230 260 0 0 chr3 74915428 74915478 -84684305 + (CATATA)n Simple_repeat Simple_repeat 5 54 0 5 1156 237 146 0 0 chr3 74915479 74915527 -84684256 + (CCCTAA)n Simple_repeat Simple_repeat 2 49 0 5 1156 3455 240 26 60 chr3 74916274 74916608 -84683175 - Lx9 LINE L1 0 7644 7351 5 1156 3440 158 74 5 chr3 74916608 74916696 -84683087 - Lx3B LINE L1 -3 6970 6877 5 1156 207 69 0 0 chr3 74916696 74916725 -84683058 + (CA)n Simple_repeat Simple_repeat 1 29 0 5 1156 3440 158 74 5 chr3 74916725 74917271 -84682512 - Lx3B LINE L1 -97 6876 6292 5 1156 3455 240 26 60 chr3 74917271 74917989 -84681794 - Lx9 LINE L1 -294 7350 6628 5 1156 318 333 42 30 chr3 74918029 74918196 -84681587 - MIRb SINE MIR -34 234 66 5 1156 2061 193 12 10 chr3 74918849 74919262 -84680521 + Lx4B LINE L1 6638 7051 -7 5 1156 202 154 0 25 chr3 74920455 74920476 -84679307 + A-rich Low_complexity Low_complexity 2 22 0 5 1156 1263 94 0 0 chr3 74920476 74920656 -84679127 + (GAGAA)n Simple_repeat Simple_repeat 1 180 0 5 1156 202 154 0 25 chr3 74920656 74920674 -84679109 + A-rich Low_complexity Low_complexity 23 40 0 5 1156 411 21 0 0 chr3 74920720 74920768 -84679015 + (CAAAA)n Simple_repeat Simple_repeat 4 51 0 5 1156 687 295 85 7 chr3 74920782 74921052 -84678731 - Lx8 LINE L1 -2 7471 7181 5 1156 640 322 47 46 chr3 74921158 74921858 -84677925 + L1_Rod LINE L1 5050 5789 -523 5 1156 500 180 18 0 chr3 74921858 74921969 -84677814 + (TATATG)n Simple_repeat Simple_repeat 4 116 0 5 1156 2231 193 20 0 chr3 74922940 74923333 -84676450 - Lx4A LINE L1 -3 7055 6655 5 1156 1001 127 0 0 chr3 74923333 74923483 -84676300 + Lx4A LINE L1 5833 5982 -1076 5 1156 3037 166 64 22 chr3 74923499 74924092 -84675691 + Lx4A LINE L1 6055 6672 -386 5 1156 230 317 12 47 chr3 74924936 74925022 -84674761 - PB1D10 SINE Alu -1 116 34 5 1156 407 165 0 21 chr3 74925801 74925825 -84673958 + (CATATA)n Simple_repeat Simple_repeat 4 27 0 5 1156 1254 95 0 0 chr3 74925825 74926004 -84673779 + (CA)n Simple_repeat Simple_repeat 2 180 0 5 1156 407 165 0 21 chr3 74926004 74926072 -84673711 + (CATATA)n Simple_repeat Simple_repeat 4 69 0 5 1156 512 294 82 53 chr3 74926140 74926348 -84673435 + B4 SINE B4 3 216 -76 5 1156 324 0 0 0 chr3 74926366 74926402 -84673381 + (CA)n Simple_repeat Simple_repeat 2 37 0 5 1156 1768 169 21 15 chr3 74926559 74926889 -84672894 + L1_Mur2 LINE L1 4914 5245 -632 5 1156 2709 209 38 22 chr3 74926887 74927487 -84672296 + Lx3C LINE L1 6365 6974 -2 5 1156 714 12 0 0 chr3 74927850 74927933 -84671850 + (TG)n Simple_repeat Simple_repeat 2 84 0 5 1156 830 119 0 16 chr3 74927934 74928062 -84671721 - B1_Mus1 SINE Alu -12 136 11 5 1156 279 115 49 0 chr3 74929023 74929084 -84670699 - Lx3A LINE L1 0 6981 6918 5 1156 809 266 34 0 chr3 74929084 74929261 -84670522 - B3 SINE B2 -32 184 2 5 1156 247 218 23 114 chr3 74930512 74930600 -84669183 + Tigger7 DNA MER2_type 949 1028 -1463 5 1156 3256 57 0 7 chr3 74932519 74932928 -84666855 + L1_Mus1 LINE L1 6161 6566 -1 5 1156 334 0 0 42 chr3 74932959 74933007 -84666776 + (CAAAAA)n Simple_repeat Simple_repeat 2 47 0 5 1156 1452 149 57 15 chr3 74934252 74934517 -84665266 - Lx2 LINE L1 -1 6996 6721 5 1156 8442 25 0 0 chr3 74934809 74936174 -84663609 - L1Md_T LINE L1 0 6582 5218 5 1156 5043 24 0 0 chr3 74936173 74936762 -84663021 + L1Md_T LINE L1 4616 5204 -679 5 1156 454 146 9 35 chr3 74937222 74937336 -84662447 + GA-rich Low_complexity Low_complexity 5 115 0 5 1156 663 13 0 0 chr3 74937736 74937812 -84661971 + (GA)n Simple_repeat Simple_repeat 2 77 0 5 1156 377 365 97 16 chr3 74938721 74938951 -84660832 + B4A SINE B4 1 246 -46 5 1156 297 0 0 0 chr3 74938967 74939000 -84660783 + (CA)n Simple_repeat Simple_repeat 2 34 0 5 1156 402 101 0 0 chr3 74939000 74939069 -84660714 + (GA)n Simple_repeat Simple_repeat 1 69 0 5 1156 685 117 0 96 chr3 74939166 74939365 -84660418 + (TA)n Simple_repeat Simple_repeat 1 180 0 5 1156 878 52 9 0 chr3 74939425 74939541 -84660242 + (TC)n Simple_repeat Simple_repeat 1 117 0 5 1156 22 56 0 0 chr3 74939882 74939918 -84659865 + AT_rich Low_complexity Low_complexity 1 36 0 5 1156 414 0 0 0 chr3 74940909 74940955 -84658828 + (TA)n Simple_repeat Simple_repeat 2 47 0 5 1156 1173 164 65 4 chr3 74942710 74942942 -84656841 - Lx4B LINE L1 -318 6740 6495 5 1156 1041 239 38 11 chr3 74942939 74943206 -84656577 + Lx4B LINE L1 6768 7041 -17 5 1156 1544 90 0 0 chr3 74943868 74944080 -84655703 - L1_Mus1 LINE L1 0 6567 6356 5 1156 961 308 24 50 chr3 74944179 74944559 -84655224 - MTEa LTR MaLR -2 377 8 5 1156 22 70 0 0 chr3 74945160 74945203 -84654580 + AT_rich Low_complexity Low_complexity 1 43 0 5 1156 290 265 124 29 chr3 74945268 74945373 -84654410 - PB1D10 SINE Alu 0 117 3 5 1156 23 0 0 0 chr3 74946372 74946395 -84653388 + AT_rich Low_complexity Low_complexity 1 23 0 5 1156 584 273 105 0 chr3 74947090 74947262 -84652521 - ID_B1 SINE B4 -33 191 2 5 1156 195 45 43 43 chr3 74948700 74948746 -84651037 + (CAAAAA)n Simple_repeat Simple_repeat 3 48 0 5 1156 301 200 33 0 chr3 74948747 74948807 -84650976 - MER20 DNA MER1_type -152 67 6 5 1156 238 340 7 7 chr3 74948992 74949099 -84650684 + MIRm SINE MIR 70 182 -94 5 1156 449 325 0 0 chr3 74950276 74950393 -84649390 - PB1D7 SINE Alu 0 120 4 5 1156 366 23 0 0 chr3 74951854 74951897 -84647886 + (CA)n Simple_repeat Simple_repeat 2 44 0 5 1156 188 314 0 0 chr3 74951943 74951994 -84647789 - MIR SINE MIR -161 101 51 5 1156 603 182 0 0 chr3 74952325 74952451 -84647332 + GA-rich Low_complexity Low_complexity 3 128 0 5 1156 289 273 13 25 chr3 74952574 74952653 -84647130 + B4 SINE B4 177 254 -38 5 1156 426 65 0 0 chr3 74952679 74952741 -84647042 + (CA)n Simple_repeat Simple_repeat 2 63 0 5 1156 6428 126 38 1 chr3 74952920 74954284 -84645499 + Lx LINE L1 5230 6648 -6 5 1156 232 365 0 63 chr3 74955845 74955924 -84643859 - ID4_ SINE ID -7 76 3 5 1156 360 178 0 0 chr3 74955980 74956053 -84643730 + CT-rich Low_complexity Low_complexity 2 74 0 5 1156 812 289 68 5 chr3 74956056 74956261 -84643522 - B4 SINE B4 -72 220 3 5 1156 233 327 18 36 chr3 74956815 74956926 -84642857 - L2b LINE L2 -230 3145 3037 5 1156 1129 86 81 0 chr3 74960407 74960581 -84639202 + B2_Mm1a SINE B2 1 188 -5 5 1156 419 320 96 0 chr3 74960787 74960984 -84638799 + ID_B1 SINE B4 2 217 -7 5 1156 3923 128 16 16 chr3 74961821 74962446 -84637337 + Lx LINE L1 6029 6653 -1 5 1156 1266 246 46 15 chr3 74962464 74962897 -84636886 + Lx2B LINE L1 6169 6987 -13 5 1156 204 125 0 0 chr3 74963028 74963060 -84636723 + (GA)n Simple_repeat Simple_repeat 2 33 0 5 1156 355 255 170 18 chr3 74963673 74963785 -84635998 - B3 SINE B2 -7 209 81 5 1156 398 341 55 6 chr3 74964083 74964266 -84635517 + RMER30 DNA MER1_type 8 199 -3 5 1156 276 203 0 17 chr3 74964588 74964648 -84635135 + 4.5SRNA scRNA scRNA 26 84 -10 5 1156 786 82 0 9 chr3 74964598 74964709 -84635074 + B1_Mm SINE Alu 38 147 0 5 1156 6005 58 28 23 chr3 74964810 74965664 -84634119 - L1Md_F2 LINE L1 -11 6571 5714 5 1156 4898 54 0 0 chr3 74965733 74966330 -84633453 + L1Md_F2 LINE L1 5972 6568 -14 5 1156 39 22 0 0 chr3 74966330 74966376 -84633407 + AT_rich Low_complexity Low_complexity 1 46 0 5 1156 363 380 0 44 chr3 74967220 74967355 -84632428 + RSINE1 SINE B4 3 131 -34 6 1156 420 20 0 0 chr3 74967356 74967405 -84632378 + (CA)n Simple_repeat Simple_repeat 1 49 0 6 1156 32 0 0 0 chr3 74968658 74968690 -84631093 + AT_rich Low_complexity Low_complexity 1 32 0 6 1156 1890 336 84 42 chr3 74969626 74970801 -84628982 - Lx8 LINE L1 -134 7339 6100 6 1156 707 226 198 0 chr3 74970801 74970978 -84628805 - B3 SINE B2 -4 212 1 6 1156 1890 319 93 45 chr3 74970978 74971553 -84628230 - Lx8 LINE L1 -1374 6099 5523 6 1156 22 56 0 0 chr3 74972165 74972201 -84627582 + AT_rich Low_complexity Low_complexity 1 36 0 6 1156 291 250 0 0 chr3 74972251 74972323 -84627460 + (CA)n Simple_repeat Simple_repeat 1 72 0 6 1156 279 226 32 0 chr3 74972627 74972645 -84627138 + ORR1B1-int LTR MaLR 627 648 -861 6 1156 917 56 0 0 chr3 74972645 74972770 -84627013 + B1_Mus2 SINE Alu 2 126 -21 6 1156 783 219 47 73 chr3 74972874 74973106 -84626677 - MTC LTR MaLR 0 421 196 6 1157 544 305 45 20 chr3 74973231 74973432 -84626351 + B3 SINE B2 4 209 -7 6 1157 926 70 23 0 chr3 74973647 74973776 -84626007 + L1_Mus1 LINE L1 6436 6567 0 6 1157 749 142 14 28 chr3 74974083 74974228 -84625555 - URR1A DNA MER1_type -6 220 78 6 1157 10384 101 41 7 chr3 74974824 74977449 -84622334 - Lx3A LINE L1 -6 6975 4243 6 1157 825 211 39 17 chr3 74977449 74977627 -84622156 - MTC LTR MaLR -171 250 69 6 1157 6474 65 1 0 chr3 74977635 74978455 -84621328 - L1_Mus1 LINE L1 0 6567 5747 6 1157 3548 70 6 4 chr3 74978458 74978944 -84620839 + L1_Mus1 LINE L1 5313 5799 -84 6 1157 24 0 0 0 chr3 74978949 74978973 -84620810 + AT_rich Low_complexity Low_complexity 1 24 0 6 1157 4763 248 27 28 chr3 74978973 74980302 -84619481 - Lx5 LINE L1 -5 7045 5718 6 1157 530 103 11 0 chr3 74980302 74980389 -84619394 + (CAGA)n Simple_repeat Simple_repeat 3 90 0 6 1157 763 89 16 16 chr3 74980391 74980517 -84619266 + (GGAA)n Simple_repeat Simple_repeat 4 129 0 6 1157 229 229 0 41 chr3 74980567 74980640 -84619143 + Lx7 LINE L1 7627 7696 0 6 1157 332 82 188 0 chr3 74980669 74980754 -84619029 + Lx9 LINE L1 7544 7644 0 6 1157 2393 76 112 36 chr3 74980932 74981289 -84618494 - L1_Mus2 LINE L1 -3 6563 6180 6 1157 774 41 5 80 chr3 74983333 74983520 -84616263 + (TTCTC)n Simple_repeat Simple_repeat 5 177 0 6 1157 337 252 125 97 chr3 74983537 74983713 -84616070 - B3A SINE B2 -16 182 2 6 1157 869 231 145 95 chr3 74984537 74984895 -84614888 - MTE2a LTR MaLR -3 376 1 6 1157 1341 126 0 0 chr3 74985140 74985338 -84614445 - Lx2B LINE L1 -366 6634 6437 6 1157 845 154 12 12 chr3 74985341 74985512 -84614271 + Lx2B LINE L1 6824 6994 -6 6 1157 5697 118 65 12 chr3 74986019 74986962 -84612821 + Lx LINE L1 5655 6647 -7 6 1157 2232 241 25 92 chr3 74987109 74987759 -84612024 - RMER19C LTR ERVK -5 606 1 6 1157 669 106 138 0 chr3 74988749 74988872 -84610911 - L1_Mus3 LINE L1 -7 6631 6492 6 1157 309 270 0 21 chr3 74988875 74989015 -84610768 + L1MA4 LINE L1 5094 5230 -913 6 1157 329 279 23 23 chr3 74989020 74989108 -84610675 + MTEa LTR MaLR 1 88 -291 6 1157 386 253 64 3 chr3 74989125 74989291 -84610492 + L1MA4 LINE L1 5714 5889 -411 6 1157 237 208 83 0 chr3 74989343 74989391 -84610392 - ID4_ SINE ID -28 55 4 6 1157 396 0 0 0 chr3 74989408 74989452 -84610331 + (GA)n Simple_repeat Simple_repeat 2 45 0 6 1157 2677 231 20 10 chr3 74989969 74990581 -84609202 - Lx5 LINE L1 -11 7039 6422 6 1157 3916 77 0 0 chr3 74990589 74991122 -84608661 + L1_Mus3 LINE L1 5976 6508 -130 6 1157 3820 136 61 32 chr3 74991189 74991919 -84607864 - RMER17A LTR ERVK -13 738 3 6 1157 607 102 18 9 chr3 74991919 74992074 -84607709 + L1_Mus3 LINE L1 6514 6638 0 6 1157 5460 118 23 2 chr3 74992087 74993762 -84606021 + L1Md_F2 LINE L1 384 2094 -3789 6 1157 6299 72 7 7 chr3 74993757 74994559 -84605224 - L1Md_F2 LINE L1 -635 5947 5154 6 1157 663 13 0 0 chr3 74994559 74994635 -84605148 + (GAAA)n Simple_repeat Simple_repeat 2 77 0 6 1157 6299 79 12 13 chr3 74994635 74994808 -84604975 - L1Md_F2 LINE L1 -730 5153 4973 6 1157 4157 100 5 2 chr3 74994808 74995398 -84604385 + L1Md_F2 LINE L1 5972 6563 -19 6 1157 240 86 0 0 chr3 74995401 74995436 -84604347 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 6 1157 24924 84 5 48 chr3 74995441 75000000 -84599783 + L1Md_F2 LINE L1 2086 6441 -141 6 1157 647 123 0 16 chr3 75000000 75000124 -84599659 + L1Md_F2 LINE L1 6442 6563 -19 1 1157 9382 164 75 37 chr3 75000131 75000412 -84599371 - L1_Mur2 LINE L1 -2352 3525 3241 2 1157 1842 56 0 0 chr3 75000412 75000643 -84599140 - L1_Mus1 LINE L1 0 6567 6337 3 1157 9382 164 75 37 chr3 75000643 75000757 -84599026 - L1_Mur2 LINE L1 -2637 3240 3125 2 1157 2084 144 6 9 chr3 75000757 75001107 -84598676 - Lx LINE L1 -4 6650 6302 4 1157 9382 164 75 37 chr3 75001107 75001177 -84598606 - L1_Mur2 LINE L1 -2753 3124 3062 2 1157 873 45 0 0 chr3 75001177 75001287 -84598496 + (TTC)n Simple_repeat Simple_repeat 2 111 0 5 1157 942 127 0 18 chr3 75001288 75001457 -84598326 - Lx LINE L1 -9 6645 6480 6 1157 1410 56 0 0 chr3 75001457 75001637 -84598146 + (TTC)n Simple_repeat Simple_repeat 1 180 0 7 1157 9382 164 75 37 chr3 75001637 75002618 -84597165 - L1_Mur2 LINE L1 -2816 3061 2050 2 1157 969 26 0 0 chr3 75002618 75002734 -84597049 + (TG)n Simple_repeat Simple_repeat 1 116 0 8 1157 9382 164 75 37 chr3 75002734 75003126 -84596657 - L1_Mur2 LINE L1 -3828 2049 1670 2 1157 333 0 0 0 chr3 75003126 75003163 -84596620 + (TTA)n Simple_repeat Simple_repeat 3 39 0 9 1157 9382 221 92 30 chr3 75003163 75004066 -84595717 - L1_Mur2 LINE L1 -4208 1669 603 2 1157 281 304 25 0 chr3 75004221 75004300 -84595483 - B4A SINE B4 -204 88 8 1 1157 216 184 41 0 chr3 75004410 75004459 -84595324 + (TCTG)n Simple_repeat Simple_repeat 1 51 0 1 1157 423 0 0 0 chr3 75004459 75004506 -84595277 + (TC)n Simple_repeat Simple_repeat 2 48 0 1 1157 696 105 8 24 chr3 75004507 75004634 -84595149 + (GAA)n Simple_repeat Simple_repeat 1 125 0 1 1157 626 333 79 20 chr3 75005005 75005308 -84594475 - MTE-int LTR MaLR -2 1578 1258 1 1157 630 284 6 18 chr3 75005710 75005875 -84593908 - Lx5 LINE L1 -40 7420 7258 1 1157 627 142 80 0 chr3 75005876 75005989 -84593794 + B1_Mus1 SINE Alu 2 123 -25 1 1157 2624 82 53 8 chr3 75006012 75006391 -84593392 + MTB LTR MaLR 5 400 0 1 1157 2221 256 62 65 chr3 75006391 75008110 -84591673 - Lx5 LINE L1 -200 7260 5319 1 1157 4730 215 72 7 chr3 75008113 75009198 -84590585 + RMER12B LTR ERVK 19 1173 -231 1 1157 326 159 14 0 chr3 75009203 75009272 -84590511 + CT-rich Low_complexity Low_complexity 2 71 0 1 1157 338 257 54 54 chr3 75009307 75009479 -84590304 + RLTR21 LTR ERVK 1408 1572 0 2 1157 8575 205 51 37 chr3 75009479 75011667 -84588116 - Lx5 LINE L1 -555 5322 3104 1 1157 277 200 0 0 chr3 75011677 75011742 -84588041 + MusHAL1 LINE L1 1840 1904 -808 2 1157 186 133 0 0 chr3 75012100 75012130 -84587653 + (TAGA)n Simple_repeat Simple_repeat 4 33 0 2 1157 947 308 80 15 chr3 75012141 75012405 -84587378 + B4A SINE B4 6 286 -6 2 1157 759 305 64 10 chr3 75012461 75012756 -84587027 + MTE2b LTR MaLR 3 313 -66 2 1157 339 25 0 0 chr3 75012791 75012831 -84586952 + (GA)n Simple_repeat Simple_repeat 1 40 0 2 1157 383 20 0 38 chr3 75012985 75013038 -84586745 + (TAAA)n Simple_repeat Simple_repeat 2 52 0 2 1157 359 285 110 85 chr3 75013080 75013352 -84586431 - L1ME1 LINE L1 -294 5885 5607 2 1157 259 83 0 0 chr3 75013830 75013866 -84585917 - L1_Mus2 LINE L1 -115 6451 6416 2 1157 366 208 0 19 chr3 75013866 75013974 -84585809 + L1_Mus3 LINE L1 6533 6638 0 2 1157 32 26 0 0 chr3 75013978 75014017 -84585766 + AT_rich Low_complexity Low_complexity 1 39 0 3 1157 188 374 37 18 chr3 75014547 75014656 -84585127 - MIR3 SINE MIR -48 160 50 3 1157 289 0 24 24 chr3 75015948 75015990 -84583793 + (TA)n Simple_repeat Simple_repeat 2 43 0 3 1157 357 24 0 0 chr3 75015990 75016031 -84583752 + (TG)n Simple_repeat Simple_repeat 1 42 0 3 1157 368 319 31 5 chr3 75016031 75016226 -84583557 + L1MA4 LINE L1 5719 5918 -382 3 1157 241 290 0 0 chr3 75016632 75016694 -84583089 + GA-rich Low_complexity Low_complexity 4 65 0 3 1157 507 257 18 0 chr3 75017140 75017253 -84582530 - B1_Mur1 SINE Alu -8 141 27 3 1157 681 102 8 17 chr3 75017661 75017780 -84582003 + (TTC)n Simple_repeat Simple_repeat 2 119 0 3 1157 441 0 0 0 chr3 75017801 75017850 -84581933 + (TG)n Simple_repeat Simple_repeat 2 50 0 3 1157 333 408 44 13 chr3 75017853 75018012 -84581771 - RSINE1 SINE B4 0 165 2 3 1157 25 0 0 0 chr3 75018021 75018046 -84581737 + AT_rich Low_complexity Low_complexity 1 25 0 4 1157 2021 320 98 42 chr3 75018128 75018526 -84581257 - Lx8 LINE L1 -137 7336 6928 4 1157 1813 135 114 72 chr3 75018526 75018982 -84580801 + IAPLTR2_Mm LTR ERVK 1 475 0 4 1157 2021 320 98 42 chr3 75018982 75019682 -84580101 - Lx8 LINE L1 -546 6927 6176 4 1157 216 290 48 16 chr3 75019783 75019811 -84579972 - RSINE1 SINE B4 -93 72 8 4 1157 230 114 0 0 chr3 75019811 75019846 -84579937 - B3A SINE B2 -157 41 7 4 1157 286 270 73 13 chr3 75021514 75021664 -84578119 - Tigger2b DNA MER2_type -418 308 150 4 1157 491 0 17 0 chr3 75021955 75022014 -84577769 + (GA)n Simple_repeat Simple_repeat 1 60 0 4 1157 1616 73 18 0 chr3 75022702 75022922 -84576861 + L1_Mus2 LINE L1 6341 6564 -2 4 1157 23 0 0 0 chr3 75023174 75023197 -84576586 + AT_rich Low_complexity Low_complexity 1 23 0 4 1157 405 0 0 0 chr3 75023381 75023426 -84576357 + (CA)n Simple_repeat Simple_repeat 2 46 0 4 1157 2760 244 95 30 chr3 75023769 75024484 -84575299 + RMER1C Other Other 449 1226 -116 5 1157 549 83 0 0 chr3 75024484 75024568 -84575215 + (TG)n Simple_repeat Simple_repeat 2 85 0 5 1157 2760 244 95 30 chr3 75024568 75024691 -84575092 + RMER1C Other Other 1227 1342 0 5 1157 542 331 88 36 chr3 75026741 75027070 -84572713 - MER115 DNA Tip100 -14 679 334 5 1157 1888 231 55 118 chr3 75027229 75027455 -84572328 - RMER19C LTR ERVK 0 611 397 5 1157 2970 80 25 0 chr3 75027455 75027856 -84571927 - RLTR10A LTR ERVK 0 411 1 5 1157 1888 231 55 118 chr3 75027856 75028281 -84571502 - RMER19C LTR ERVK -215 396 1 5 1157 2164 228 28 31 chr3 75029319 75029827 -84569956 - RMER15 LTR ERVL -21 554 49 5 1157 246 300 0 0 chr3 75029922 75029982 -84569801 - RMER15 LTR ERVL -515 60 1 5 1157 588 95 0 0 chr3 75030158 75030242 -84569541 + (TA)n Simple_repeat Simple_repeat 2 85 0 5 1157 22 0 0 0 chr3 75031050 75031072 -84568711 + AT_rich Low_complexity Low_complexity 1 22 0 5 1157 28 79 0 0 chr3 75031615 75031678 -84568105 + AT_rich Low_complexity Low_complexity 1 63 0 5 1157 289 333 53 91 chr3 75031817 75032081 -84567702 - ORR1E LTR MaLR -102 257 4 5 1157 1471 163 47 88 chr3 75032288 75032631 -84567152 - ORR1A4 LTR MaLR 0 329 1 6 1157 22 0 0 0 chr3 75033028 75033050 -84566733 + AT_rich Low_complexity Low_complexity 1 22 0 6 1157 417 228 0 0 chr3 75033350 75033442 -84566341 + Lx6 LINE L1 7353 7444 -16 6 1157 3466 229 41 15 chr3 75033437 75034312 -84565471 + Lx6 LINE L1 4950 5847 -33 6 1157 1428 183 133 3 chr3 75034328 75034629 -84565154 + ORR1B1 LTR MaLR 47 386 -8 6 1157 1867 284 33 16 chr3 75034633 75035876 -84563907 + Lx6 LINE L1 5846 7434 -26 6 1157 525 16 0 0 chr3 75035898 75035960 -84563823 + (TG)n Simple_repeat Simple_repeat 1 62 0 6 1157 492 18 0 0 chr3 75035962 75036019 -84563764 + (GA)n Simple_repeat Simple_repeat 2 58 0 6 1157 1294 209 107 56 chr3 75036856 75037231 -84562552 + ORR1B1 LTR MaLR 1 394 0 6 1157 796 301 108 13 chr3 75037277 75037657 -84562126 + MER95 LTR ERV 14 429 -2 6 1157 199 360 27 0 chr3 75038280 75038355 -84561428 + MER5A DNA MER1_type 1 77 -112 6 1157 4618 261 90 14 chr3 75038415 75039798 -84559985 + Lx6 LINE L1 5941 7428 -32 7 1157 291 366 7 7 chr3 75039803 75039938 -84559845 + MER5A DNA MER1_type 54 188 -1 6 1157 798 319 78 26 chr3 75039966 75040275 -84559508 + MTEb LTR MaLR 53 377 -2 7 1157 226 318 23 23 chr3 75040297 75040384 -84559399 + MIR SINE MIR 53 139 -123 7 1157 1676 163 43 61 chr3 75040713 75041040 -84558743 + ORR1A4 LTR MaLR 1 321 -8 7 1157 365 102 17 0 chr3 75041118 75041177 -84558606 + (TC)n Simple_repeat Simple_repeat 1 60 0 7 1157 232 309 95 52 chr3 75041812 75041928 -84557855 - MLT1J-int LTR MaLR -1199 188 68 7 1157 275 268 42 0 chr3 75042431 75042502 -84557281 + ID4_ SINE ID 4 77 -6 7 1157 414 53 0 0 chr3 75042639 75042696 -84557087 + (A)n Simple_repeat Simple_repeat 1 57 0 7 1157 302 298 29 0 chr3 75044151 75044255 -84555528 + L2a LINE L2 3320 3426 0 7 1157 527 272 90 30 chr3 75044506 75044673 -84555110 - B4A SINE B4 0 292 116 7 1157 240 209 14 43 chr3 75044725 75044795 -84554988 - B4A SINE B4 -181 111 44 7 1157 837 337 101 26 chr3 75044801 75045307 -84554476 + MER34A1 LTR ERV1 44 587 0 8 1157 520 306 140 20 chr3 75045695 75045912 -84553871 + MTD LTR MaLR 5 220 -159 8 1157 439 214 0 23 chr3 75046117 75046203 -84553580 - B4 SINE B4 -205 87 4 8 1157 281 184 13 13 chr3 75047333 75047410 -84552373 + Lx9 LINE L1 7562 7638 -6 8 1157 554 298 9 37 chr3 75048592 75048808 -84550975 - B3 SINE B2 -5 211 2 8 1157 185 268 17 35 chr3 75050126 75050184 -84549599 + MIR SINE MIR 65 121 -141 8 1157 21 57 0 0 chr3 75050973 75051008 -84548775 + AT_rich Low_complexity Low_complexity 1 35 0 8 1157 193 281 31 15 chr3 75051168 75051233 -84548550 - MER5A DNA MER1_type -83 106 41 8 1157 25 0 0 0 chr3 75051350 75051375 -84548408 + AT_rich Low_complexity Low_complexity 1 25 0 8 1157 288 326 85 15 chr3 75051707 75051852 -84547931 + MIR SINE MIR 3 152 -56 8 1157 353 347 67 0 chr3 75052357 75052507 -84547276 - MER5A1 DNA MER1_type -6 160 1 9 1157 410 345 16 54 chr3 75052514 75052698 -84547085 - MER5B DNA MER1_type -1 177 1 9 1157 213 39 0 0 chr3 75054362 75054388 -84545395 + (TG)n Simple_repeat Simple_repeat 2 27 0 9 1157 285 203 0 104 chr3 75054392 75054469 -84545314 - B3A SINE B2 -38 160 92 9 1157 194 208 28 0 chr3 75054470 75054542 -84545241 + (TTTG)n Simple_repeat Simple_repeat 2 75 0 9 1157 500 247 0 0 chr3 75054542 75054631 -84545152 - B3A SINE B2 -104 94 6 9 1157 240 270 16 16 chr3 75055153 75055217 -84544566 + MTE2b LTR MaLR 278 341 -38 9 1157 1932 151 115 52 chr3 75057243 75057475 -84542308 + RLTR11B LTR ERVK 2 257 -196 9 1157 1073 85 6 33 chr3 75057475 75057658 -84542125 + (GGGAGA)n Simple_repeat Simple_repeat 1 178 0 9 1157 1932 151 115 52 chr3 75057658 75057850 -84541933 + RLTR11B LTR ERVK 258 453 0 9 1157 193 339 18 0 chr3 75057999 75058055 -84541728 - MIRb SINE MIR -186 82 26 9 1157 322 378 60 16 chr3 75059035 75059218 -84540565 - MIRb SINE MIR -49 219 29 9 1157 285 358 165 36 chr3 75059807 75060056 -84539727 + B4A SINE B4 8 288 -4 1 1157 278 371 47 34 chr3 75060950 75060973 -84538810 + ID_B1 SINE B4 69 218 -6 1 1157 322 328 88 0 chr3 75060973 75061098 -84538685 + B1F1 SINE Alu 8 143 -6 1 1157 681 291 50 39 chr3 75064593 75064875 -84534908 + B4A SINE B4 2 286 -6 1 1157 318 26 0 0 chr3 75064904 75064943 -84534840 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 1157 3092 38 0 14 chr3 75064943 75065313 -84534470 - RLTR10B2 LTR ERVK 0 365 1 1 1157 409 71 0 41 chr3 75065323 75065396 -84534387 + L1Md_F2 LINE L1 6511 6580 -2 1 1157 2101 67 3 92 chr3 75065684 75066087 -84533696 - L1_Mus2 LINE L1 0 6566 6268 1 1157 2744 148 86 40 chr3 75066834 75067390 -84532393 - RMER4B LTR ERVK 0 585 4 1 1157 183 80 0 0 chr3 75067432 75067457 -84532326 + (GA)n Simple_repeat Simple_repeat 1 25 0 1 1157 936 65 0 0 chr3 75067458 75067582 -84532201 + (GGAA)n Simple_repeat Simple_repeat 1 124 0 1 1157 352 354 90 95 chr3 75067589 75067729 -84532054 + B4 SINE B4 84 234 -58 1 1157 395 278 56 56 chr3 75067729 75067887 -84531896 + B3A SINE B2 1 165 -33 1 1157 399 119 0 0 chr3 75067887 75067954 -84531829 + (CA)n Simple_repeat Simple_repeat 2 68 0 1 1157 395 278 56 56 chr3 75067954 75067993 -84531790 + B3A SINE B2 166 198 0 1 1157 352 354 90 95 chr3 75067993 75068052 -84531731 + B4 SINE B4 235 282 -10 1 1157 192 77 0 0 chr3 75068101 75068127 -84531656 + (CA)n Simple_repeat Simple_repeat 1 26 0 1 1157 298 279 25 0 chr3 75068328 75068407 -84531376 - ID4_ SINE ID 0 83 3 1 1157 414 377 25 6 chr3 75068745 75068905 -84530878 + B3A SINE B2 1 163 -35 1 1157 304 189 75 0 chr3 75069065 75069118 -84530665 + B4A SINE B4 2 58 -234 1 1157 7582 53 4 6 chr3 75069242 75070216 -84529567 + L1Md_F2 LINE L1 5610 6581 -1 1 1157 183 80 0 0 chr3 75071998 75072023 -84527760 + (TA)n Simple_repeat Simple_repeat 2 26 0 1 1157 279 79 0 0 chr3 75072024 75072062 -84527721 + (CA)n Simple_repeat Simple_repeat 1 38 0 1 1157 250 302 8 16 chr3 75073211 75073274 -84526509 + (TA)n Simple_repeat Simple_repeat 1 62 0 1 1157 532 0 29 0 chr3 75073274 75073342 -84526441 + (TAGA)n Simple_repeat Simple_repeat 4 73 0 1 1157 250 302 8 16 chr3 75073342 75073406 -84526377 + (TA)n Simple_repeat Simple_repeat 2 66 0 1 1157 228 105 0 0 chr3 75074467 75074490 -84525293 + (TA)n Simple_repeat Simple_repeat 1 23 0 1 1157 387 0 0 0 chr3 75074490 75074533 -84525250 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 1157 228 105 0 0 chr3 75074533 75074547 -84525236 + (TA)n Simple_repeat Simple_repeat 1 14 0 1 1157 203 0 37 0 chr3 75075613 75075640 -84524143 + (TAAAA)n Simple_repeat Simple_repeat 1 28 0 1 1157 476 214 29 0 chr3 75076587 75076690 -84523093 + Lx3B LINE L1 6866 6971 -2 1 1157 240 122 0 0 chr3 75077338 75077379 -84522404 + (CAGA)n Simple_repeat Simple_repeat 2 42 0 1 1157 294 299 0 45 chr3 75078232 75078344 -84521439 + L1MA5 LINE L1 6191 6297 -3 1 1157 22 35 0 0 chr3 75078606 75078635 -84521148 + AT_rich Low_complexity Low_complexity 1 29 0 1 1157 4333 122 17 1 chr3 75079081 75079736 -84520047 + Lx2 LINE L1 6333 6997 0 1 1157 335 251 5 30 chr3 75079936 75080138 -84519645 + (CA)n Simple_repeat Simple_repeat 1 196 0 1 1157 475 90 26 0 chr3 75080156 75080234 -84519549 + (CA)n Simple_repeat Simple_repeat 1 80 0 1 1157 690 13 0 0 chr3 75081168 75081247 -84518536 + (TTTC)n Simple_repeat Simple_repeat 2 80 0 1 1157 1034 104 7 0 chr3 75081254 75081398 -84518385 - B1_Mus2 SINE Alu -1 146 2 1 1157 547 271 20 85 chr3 75081431 75081584 -84518199 + B4A SINE B4 2 144 -148 1 1157 235 257 0 39 chr3 75081674 75081682 -84518101 + (CA)n Simple_repeat Simple_repeat 2 9 0 1 1157 696 88 0 0 chr3 75081682 75081796 -84517987 + (GA)n Simple_repeat Simple_repeat 2 115 0 1 1157 235 257 0 39 chr3 75081796 75081864 -84517919 + (CA)n Simple_repeat Simple_repeat 2 67 0 1 1157 995 141 0 6 chr3 75082561 75082739 -84517044 - Lx LINE L1 0 6654 6478 1 1157 197 364 136 0 chr3 75083319 75083407 -84516376 + L2b LINE L2 2975 3074 -301 1 1157 464 292 149 52 chr3 75083662 75083976 -84515807 - ORR1E LTR MaLR -5 354 5 1 1157 485 316 17 23 chr3 75084092 75084267 -84515516 + B3A SINE B2 25 198 0 1 1157 304 327 19 39 chr3 75085237 75085393 -84514390 - L1M4 LINE L1 -387 5792 5640 1 1157 246 178 0 0 chr3 75085538 75085583 -84514200 - L1M4 LINE L1 -573 5591 5547 1 1157 307 301 48 60 chr3 75085668 75085834 -84513949 - L1M4 LINE L1 -798 5348 5185 1 1157 219 204 55 18 chr3 75085834 75085889 -84513894 - BC1_Mm scRNA scRNA -93 59 3 1 1157 8486 25 1 0 chr3 75085899 75087334 -84512449 - L1Md_A LINE L1 -1 6581 5146 1 1157 25508 13 0 0 chr3 75087331 75090991 -84508792 - L1Md_A LINE L1 0 6582 2924 1 1157 228 180 48 32 chr3 75091629 75091692 -84508091 + LTR37A LTR ERV1 166 229 -197 1 1157 469 330 44 24 chr3 75092080 75092285 -84507498 + MER92C LTR ERV1 1 209 -345 1 1157 28 0 0 0 chr3 75092848 75092876 -84506907 + AT_rich Low_complexity Low_complexity 1 28 0 1 1157 991 238 24 12 chr3 75093132 75093383 -84506400 + Lx7 LINE L1 6611 6864 -832 1 1157 349 345 23 41 chr3 75093458 75093630 -84506153 + RMER4A LTR ERVK 22 190 -276 1 1157 1885 232 8 3 chr3 75093797 75094173 -84505610 + Lx7 LINE L1 6842 7219 -477 1 1157 2955 230 60 3 chr3 75094246 75094878 -84504905 + RodERV21-int LTR ERV1 1771 2438 -2553 1 1157 1824 200 0 0 chr3 75095955 75096295 -84503488 - L1_Mur1 LINE L1 -674 5212 4873 1 1157 2657 105 0 3 chr3 75096296 75096677 -84503106 + L1_Mus4 LINE L1 6241 6620 -16 1 1157 828 0 0 0 chr3 75096679 75096771 -84503012 + (GAA)n Simple_repeat Simple_repeat 3 94 0 1 1157 5941 216 40 21 chr3 75097598 75098694 -84501089 + RodERV21-int LTR ERV1 3502 4623 -368 1 1157 1655 93 0 75 chr3 75098694 75098949 -84500834 - L1_Mus2 LINE L1 0 6566 6331 1 1157 5941 216 40 21 chr3 75098949 75099153 -84500630 + RodERV21-int LTR ERV1 4624 4826 -165 1 1157 505 196 31 10 chr3 75099154 75099252 -84500531 + RMER4B LTR ERVK 346 445 -140 1 1157 1550 248 89 69 chr3 75099293 75099818 -84499965 + RMER21B LTR ERV1 18 553 -289 1 1157 340 302 92 85 chr3 75100583 75100865 -84498918 - B4A SINE B4 -5 287 4 1 1157 229 335 60 90 chr3 75102853 75103020 -84496763 - MER5A DNA MER1_type -24 165 4 1 1157 1487 206 14 129 chr3 75103515 75103636 -84496147 + ORR1B1 LTR MaLR 32 137 -257 1 1157 897 123 0 0 chr3 75103636 75103815 -84495968 + (TG)n Simple_repeat Simple_repeat 1 179 0 1 1157 1487 196 8 140 chr3 75103815 75104039 -84495744 + ORR1B1 LTR MaLR 138 350 -44 1 144 2409 77 29 34 chr3 75104039 75104388 -84495395 + L1Md_F2 LINE L1 6223 6569 -13 1 1158 1487 196 8 140 chr3 75104388 75104453 -84495330 + ORR1B1 LTR MaLR 351 386 -8 1 1158 307 307 80 0 chr3 75104450 75104538 -84495245 - PB1 SINE Alu -10 117 23 1 1158 213 213 0 0 chr3 75104723 75104770 -84495013 + (TA)n Simple_repeat Simple_repeat 2 48 0 1 1158 240 248 143 9 chr3 75104771 75104883 -84494900 - L1MA7 LINE L1 -27 6264 6140 1 1158 210 118 0 0 chr3 75104967 75105001 -84494782 + (TCC)n Simple_repeat Simple_repeat 3 36 0 1 1158 773 273 5 54 chr3 75105055 75105276 -84494507 + MTEb LTR MaLR 7 216 -163 1 1158 211 186 31 78 chr3 75105305 75105369 -84494414 - RSINE1 SINE B4 -103 62 2 1 1158 189 0 0 0 chr3 75105392 75105413 -84494370 + (TTTTG)n Simple_repeat Simple_repeat 3 23 0 1 1158 192 365 41 10 chr3 75105546 75105643 -84494140 + MIRb SINE MIR 95 194 -74 1 1158 2077 231 33 0 chr3 75106335 75106757 -84493026 + MT2A LTR ERVL 25 568 -33 1 1158 477 50 0 0 chr3 75106757 75106817 -84492966 + (CA)n Simple_repeat Simple_repeat 2 61 0 1 1158 396 253 61 180 chr3 75106817 75106852 -84492931 + MT2A LTR ERVL 569 601 0 1 1158 656 148 7 7 chr3 75106920 75107063 -84492720 + L1_Mus4 LINE L1 6490 6632 -4 1 1158 546 29 0 0 chr3 75107410 75107478 -84492305 + (TG)n Simple_repeat Simple_repeat 2 69 0 1 1158 218 360 54 9 chr3 75107478 75107584 -84492199 - B3 SINE B2 -10 206 95 1 1158 288 335 96 12 chr3 75107589 75107755 -84492028 - L1MC3 LINE L1 -364 7421 7242 1 1158 4912 40 0 7 chr3 75107933 75108538 -84491245 - L1Md_F3 LINE L1 -2 6582 5982 1 1158 464 328 25 25 chr3 75108971 75109168 -84490615 + B3A SINE B2 2 198 0 1 1158 710 206 30 0 chr3 75109639 75109770 -84490013 - SSU-rRNA_Hsa rRNA rRNA -410 1459 1325 1 1158 502 238 0 8 chr3 75109775 75109898 -84489885 + Lx6 LINE L1 7312 7433 -27 1 1158 377 233 102 79 chr3 75110217 75110347 -84489436 + MIR SINE MIR 82 225 -37 1 1158 3169 99 31 27 chr3 75110347 75110836 -84488947 + Lx2 LINE L1 6507 6997 0 1 1158 377 233 102 79 chr3 75110836 75110882 -84488901 + MIR SINE MIR 226 262 0 1 1158 643 206 7 29 chr3 75111850 75111990 -84487793 + B1_Mur1 SINE Alu 5 141 -8 1 1158 520 362 0 0 chr3 75112068 75112217 -84487566 + RSINE1 SINE B4 2 150 -15 1 1158 1014 287 63 25 chr3 75112264 75112628 -84487155 + Lx8 LINE L1 7090 7467 -6 1 1158 526 309 27 89 chr3 75112791 75112827 -84486956 - B4 SINE B4 -81 211 179 1 1158 1911 142 14 61 chr3 75112827 75113171 -84486612 - ORR1A4 LTR MaLR 0 329 2 1 1158 526 309 27 89 chr3 75113171 75113358 -84486425 - B4 SINE B4 -114 178 2 1 1158 180 0 0 0 chr3 75113364 75113384 -84486399 + (TG)n Simple_repeat Simple_repeat 1 20 0 1 1158 327 259 65 130 chr3 75113518 75113687 -84486096 - RMER2 LTR ERV1 -122 445 288 1 1158 423 295 0 18 chr3 75113744 75113858 -84485925 - RMER2 LTR ERV1 -451 116 5 1 1158 819 227 21 11 chr3 75114316 75114503 -84485280 + MTC LTR MaLR 229 417 -4 1 1158 1182 251 76 68 chr3 75114622 75114989 -84484794 + ORR1D2 LTR MaLR 1 370 0 1 1158 492 244 164 32 chr3 75117991 75118241 -84481542 + L1MC2 LINE L1 3589 3871 -2275 1 1158 32344 76 5 4 chr3 75118282 75123526 -84476257 + L1Md_Gf LINE L1 247 5589 -297 1 1158 7840 57 6 0 chr3 75123526 75124515 -84475268 + L1Md_F2 LINE L1 5588 6582 0 1 1158 40 79 0 0 chr3 75124619 75124708 -84475075 + AT_rich Low_complexity Low_complexity 1 89 0 1 1158 261 271 120 28 chr3 75124714 75124930 -84474853 + L1MC2 LINE L1 4280 4515 -1631 1 1158 748 312 25 33 chr3 75125146 75125388 -84474395 + RMER15 LTR ERVL 336 575 0 1 1158 671 290 33 30 chr3 75125400 75125699 -84474084 + L1MC2 LINE L1 4549 4848 -1298 1 1158 301 354 14 7 chr3 75125815 75125960 -84473823 + L1MC2 LINE L1 5799 5944 -400 1 1158 405 0 0 0 chr3 75126888 75126933 -84472850 + (CAGA)n Simple_repeat Simple_repeat 4 48 0 1 1158 339 306 26 69 chr3 75127144 75127260 -84472523 + PB1D10 SINE Alu 19 129 -20 2 1158 853 156 124 12 chr3 75128320 75128489 -84471294 - MTC LTR MaLR 0 421 234 2 1158 600 127 43 43 chr3 75128905 75129045 -84470738 - Lx3_Mus LINE L1 0 7009 6870 2 1158 2173 229 101 20 chr3 75129049 75129910 -84469873 - Lx6 LINE L1 -1028 6432 5494 2 1158 773 143 20 7 chr3 75129911 75130059 -84469724 + L1_Mus3 LINE L1 6474 6623 -15 2 1158 259 317 84 28 chr3 75130099 75130206 -84469577 - MIRb SINE MIR -40 228 116 2 1158 745 226 0 13 chr3 75130220 75130377 -84469406 - Lx6 LINE L1 -375 5505 5351 2 1158 11201 195 79 25 chr3 75130406 75131794 -84467989 - Lx6 LINE L1 -1317 6143 4634 2 1158 315 0 0 0 chr3 75131794 75131829 -84467954 + (TTG)n Simple_repeat Simple_repeat 2 36 0 2 1158 11201 184 86 26 chr3 75131829 75133380 -84466403 - Lx6 LINE L1 -1247 4633 3044 2 1158 24 85 0 0 chr3 75133458 75133517 -84466266 + AT_rich Low_complexity Low_complexity 1 59 0 2 1158 1680 239 44 33 chr3 75133524 75134004 -84465779 - RLTR20B3 LTR ERVK -1 576 92 2 1158 754 176 34 39 chr3 75134168 75134375 -84465408 - Lx6 LINE L1 -2839 3041 2836 2 1158 2726 206 28 25 chr3 75134375 75134999 -84464784 - Lx6 LINE L1 -4001 1879 1255 2 1158 260 53 0 26 chr3 75134999 75135038 -84464745 + (TTA)n Simple_repeat Simple_repeat 2 39 0 2 1158 2726 260 94 60 chr3 75135038 75135883 -84463900 - Lx6 LINE L1 -6474 1254 389 2 1158 743 139 8 0 chr3 75136730 75136859 -84462924 + (TC)n Simple_repeat Simple_repeat 2 131 0 2 1158 396 0 0 0 chr3 75137031 75137075 -84462708 + (TAAA)n Simple_repeat Simple_repeat 1 44 0 2 1158 33 0 0 0 chr3 75137593 75137626 -84462157 + AT_rich Low_complexity Low_complexity 1 33 0 2 1158 237 65 0 0 chr3 75139642 75139673 -84460110 + (TA)n Simple_repeat Simple_repeat 1 31 0 2 1158 226 368 0 0 chr3 75140049 75140117 -84459666 + B4 SINE B4 221 288 -4 2 1158 524 200 8 0 chr3 75140142 75140262 -84459521 + G-rich Low_complexity Low_complexity 3 123 0 2 1158 751 296 65 38 chr3 75140336 75140645 -84459138 + ORR1D2 LTR MaLR 5 358 -12 2 1158 354 23 0 0 chr3 75140926 75140969 -84458814 + (CA)n Simple_repeat Simple_repeat 2 44 0 2 1158 420 312 14 21 chr3 75142033 75142174 -84457609 + MIR SINE MIR 49 188 -74 2 1158 288 297 64 93 chr3 75144398 75144602 -84455181 + RLTR42-int LTR ERVK 1146 1343 -4179 2 1158 26 64 0 0 chr3 75145952 75145999 -84453784 + AT_rich Low_complexity Low_complexity 1 47 0 2 1158 1498 107 64 0 chr3 75146365 75146599 -84453184 + L1_Mus3 LINE L1 6383 6631 -7 2 1158 8107 148 17 6 chr3 75146606 75148025 -84451758 - Lx2B LINE L1 -865 5012 3579 2 1158 5454 183 85 25 chr3 75147994 75149876 -84449907 + Lx2B LINE L1 5000 6985 -15 2 1158 24 0 0 0 chr3 75149878 75149902 -84449881 + AT_rich Low_complexity Low_complexity 1 24 0 2 1158 762 225 0 0 chr3 75150111 75150289 -84449494 + GA-rich Low_complexity Low_complexity 3 180 0 2 1158 1040 114 0 12 chr3 75150296 75150464 -84449319 + (GGAA)n Simple_repeat Simple_repeat 4 169 0 2 1158 23 33 0 0 chr3 75151929 75151959 -84447824 + AT_rich Low_complexity Low_complexity 1 30 0 2 1158 294 242 42 53 chr3 75152022 75152160 -84447623 + L1MA9 LINE L1 6157 6300 -12 2 1158 669 58 0 0 chr3 75152287 75152373 -84447410 + (TATAG)n Simple_repeat Simple_repeat 5 90 0 2 1158 3219 11 0 3 chr3 75152373 75152740 -84447043 - IAPLTR1_Mm LTR ERVK -1 366 1 2 1158 25739 18 11 2 chr3 75152740 75155671 -84444112 - IAPEz-int LTR ERVK 0 6481 3525 2 1158 914 81 24 0 chr3 75155671 75155794 -84443989 - IAPEz-int LTR ERVK -2770 4910 4785 2 1158 1763 123 4 15 chr3 75155791 75156056 -84443727 - IAPEz-int LTR ERVK -5183 2497 2236 2 1158 442 66 0 32 chr3 75156045 75156108 -84443675 - IAPEz-int LTR ERVK -5062 1419 1359 2 1158 3402 81 32 14 chr3 75156108 75156822 -84442961 - IAPEz-int LTR ERVK -5819 662 8 2 1158 3230 11 0 3 chr3 75156822 75157190 -84442593 - IAPLTR1_Mm LTR ERVK 0 367 1 2 1158 225 290 16 0 chr3 75157595 75157657 -84442126 + MIRc SINE MIR 102 164 -104 2 1158 2432 151 79 7 chr3 75157741 75158196 -84441587 + RMER6C LTR ERVK 3 490 -200 2 1158 29 28 0 0 chr3 75158204 75158240 -84441543 + AT_rich Low_complexity Low_complexity 1 36 0 2 1158 1327 140 31 0 chr3 75158691 75158913 -84440870 + RMER6C LTR ERVK 462 690 0 2 1158 349 86 17 0 chr3 75159240 75159298 -84440485 - Lx4A LINE L1 -923 6135 6077 2 1158 633 191 0 0 chr3 75159295 75159410 -84440373 + Lx4A LINE L1 6942 7056 -2 2 1158 441 0 0 0 chr3 75159412 75159461 -84440322 + (TAA)n Simple_repeat Simple_repeat 2 50 0 2 1158 2784 33 0 0 chr3 75159540 75159872 -84439911 + L1Md_T LINE L1 6250 6581 -1 2 1158 187 337 23 0 chr3 75159914 75160000 -84439783 - L2 LINE L2 -633 2786 2699 2 1158 182 255 36 18 chr3 75160311 75160367 -84439416 + MIRc SINE MIR 166 222 -46 2 1158 285 310 0 33 chr3 75161820 75161910 -84437873 + MTE-int LTR MaLR 9 95 -1485 2 1158 189 0 0 0 chr3 75162207 75162228 -84437555 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 2 1158 1002 259 75 57 chr3 75162493 75162865 -84436918 + MTEa LTR MaLR 1 379 0 2 1158 750 319 55 77 chr3 75162865 75163053 -84436730 + MTEa-int LTR MaLR 2 192 -1388 2 1158 1115 81 0 0 chr3 75163053 75163201 -84436582 + B1_Mus1 SINE Alu 1 148 0 2 1158 750 319 55 77 chr3 75163201 75163378 -84436405 + MTEa-int LTR MaLR 193 359 -1221 2 1158 546 257 50 27 chr3 75163415 75163635 -84436148 + Lx7 LINE L1 7472 7696 0 2 1158 533 348 37 67 chr3 75163661 75163892 -84435891 + MTEa-int LTR MaLR 384 621 -959 2 1158 826 193 0 0 chr3 75163892 75164032 -84435751 + B1_Mur3 SINE Alu 1 140 -9 2 1158 507 33 0 0 chr3 75164032 75164093 -84435690 + (CA)n Simple_repeat Simple_repeat 2 62 0 2 1158 533 348 37 67 chr3 75164093 75164159 -84435624 + MTEa-int LTR MaLR 622 672 -908 2 1158 869 231 144 7 chr3 75164692 75165085 -84434698 + Lx3A LINE L1 886 1263 -5823 2 1158 8171 207 92 38 chr3 75165087 75165981 -84433802 + Lx3A LINE L1 1152 2056 -3824 2 1158 594 0 0 0 chr3 75165981 75166047 -84433736 + (TC)n Simple_repeat Simple_repeat 1 66 0 2 1158 327 25 0 0 chr3 75166047 75166086 -84433697 + (CA)n Simple_repeat Simple_repeat 1 40 0 2 1158 8171 206 99 38 chr3 75166086 75166129 -84433654 + Lx3A LINE L1 2057 2116 -3764 2 1158 1127 82 0 0 chr3 75166129 75166275 -84433508 - B1_Mus1 SINE Alu -2 146 1 2 1158 8171 206 99 38 chr3 75166275 75166619 -84433164 + Lx3A LINE L1 2117 2457 -3423 2 1158 782 49 0 10 chr3 75166619 75166723 -84433060 + (GAAA)n Simple_repeat Simple_repeat 2 104 0 2 1158 11105 192 61 146 chr3 75166723 75167636 -84432147 + Lx3A LINE L1 2458 3473 -2404 2 1158 194 0 39 0 chr3 75167636 75167662 -84432121 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2 1158 11105 160 46 99 chr3 75167662 75169519 -84430264 + Lx3A LINE L1 3474 5175 -1806 2 1158 986 100 19 26 chr3 75169519 75169673 -84430110 - B2_Mm2 SINE B2 -4 191 39 2 1158 11105 160 46 99 chr3 75169673 75171625 -84428158 + Lx3A LINE L1 5176 6965 -16 2 1158 294 29 0 0 chr3 75171628 75171663 -84428120 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 2 1158 240 119 0 0 chr3 75171671 75171715 -84428068 + L1_Mur3 LINE L1 5372 5415 -462 2 1158 1451 250 67 3 chr3 75171725 75172098 -84427685 + RMER1B Other Other 350 746 -320 2 1158 240 259 0 18 chr3 75172104 75172159 -84427624 + MTEa-int LTR MaLR 1461 1514 -66 2 1158 1790 179 53 6 chr3 75172167 75172505 -84427278 + ORR1B1 LTR MaLR 41 394 0 2 1158 441 0 0 0 chr3 75172604 75172653 -84427130 + (CA)n Simple_repeat Simple_repeat 2 50 0 2 1158 3226 41 0 0 chr3 75172725 75173114 -84426669 - L1Md_T LINE L1 0 6582 6194 2 1158 629 306 158 0 chr3 75173118 75173155 -84426628 + MTEa LTR MaLR 28 64 -315 2 1158 417 20 0 0 chr3 75173155 75173205 -84426578 + (TG)n Simple_repeat Simple_repeat 2 51 0 2 1158 629 297 171 22 chr3 75173205 75173393 -84426390 + MTEa LTR MaLR 65 283 -96 2 1158 1001 187 50 36 chr3 75173393 75173615 -84426168 - URR1B DNA MER1_type 0 225 1 2 1158 225 289 184 43 chr3 75173615 75173682 -84426101 + MTEa LTR MaLR 278 355 -29 2 1158 8111 66 0 5 chr3 75173682 75174787 -84424996 + L1Md_F2 LINE L1 4487 5586 -297 2 1158 8166 41 10 1 chr3 75174787 75175771 -84424012 + L1Md_F2 LINE L1 5587 6579 -3 2 1158 875 354 50 21 chr3 75175832 75176253 -84423530 + MER21B LTR ERV1 147 579 -284 2 1158 33763 35 0 0 chr3 75176264 75181698 -84418085 + L1Md_T LINE L1 59 5589 -297 2 1158 9004 6 0 0 chr3 75181698 75182694 -84417089 + L1Md_T LINE L1 5590 6585 0 2 1158 465 347 29 53 chr3 75182711 75182918 -84416865 + MER21B LTR ERV1 590 791 -72 2 1158 315 333 64 0 chr3 75183320 75183461 -84416322 + L1MC LINE L1 5568 5717 -2165 2 1158 465 19 0 0 chr3 75183734 75183788 -84415995 + (TG)n Simple_repeat Simple_repeat 1 54 0 2 1158 22 0 0 0 chr3 75183857 75183879 -84415904 + AT_rich Low_complexity Low_complexity 1 22 0 2 1158 737 301 46 0 chr3 75184295 75184468 -84415315 - B3A SINE B2 -15 183 3 2 1158 27 73 0 0 chr3 75185400 75185455 -84414328 + AT_rich Low_complexity Low_complexity 1 55 0 2 1158 257 306 14 0 chr3 75187120 75187192 -84412591 + B4A SINE B4 5 77 -215 2 1158 1712 241 64 18 chr3 75187490 75187744 -84412039 - MTD LTR MaLR -8 411 142 2 1158 1190 229 109 36 chr3 75187744 75187933 -84411850 - ORR1C2 LTR MaLR 0 384 180 2 1158 405 0 0 0 chr3 75187933 75187978 -84411805 + (GA)n Simple_repeat Simple_repeat 2 46 0 2 1158 1190 229 109 36 chr3 75187978 75188146 -84411637 - ORR1C2 LTR MaLR -205 179 3 2 1158 1712 241 64 18 chr3 75188146 75188284 -84411499 - MTD LTR MaLR -278 141 1 2 1158 283 343 0 0 chr3 75188284 75188386 -84411397 + Lx8 LINE L1 7065 7166 -307 2 1158 1200 48 7 0 chr3 75188433 75188579 -84411204 + B1_Mus2 SINE Alu 1 147 0 2 1158 201 39 0 0 chr3 75188709 75188735 -84411048 + (CAAAA)n Simple_repeat Simple_repeat 5 30 0 2 1158 223 369 9 0 chr3 75189435 75189546 -84410237 + MIR SINE MIR 95 206 -56 2 1158 279 0 0 0 chr3 75189953 75189984 -84409799 + (TG)n Simple_repeat Simple_repeat 1 31 0 2 1158 531 0 0 0 chr3 75189993 75190052 -84409731 + (GA)n Simple_repeat Simple_repeat 1 59 0 2 1158 226 274 31 110 chr3 75190207 75190334 -84409449 - Lx8 LINE L1 -315 7158 7042 2 1158 220 342 50 25 chr3 75191989 75192109 -84407674 - L2b LINE L2 -220 3155 3033 2 1158 26 0 0 0 chr3 75192268 75192294 -84407489 + AT_rich Low_complexity Low_complexity 1 26 0 2 1158 423 38 0 0 chr3 75193260 75193313 -84406470 + (TG)n Simple_repeat Simple_repeat 2 54 0 2 1158 204 253 0 0 chr3 75193409 75193500 -84406283 + (TG)n Simple_repeat Simple_repeat 2 92 0 2 1158 237 65 0 0 chr3 75193504 75193535 -84406248 + (CCCCCT)n Simple_repeat Simple_repeat 2 32 0 2 1158 549 346 105 16 chr3 75194444 75194691 -84405092 + B4A SINE B4 1 269 -23 2 1158 717 97 0 0 chr3 75194699 75194802 -84404981 + (CA)n Simple_repeat Simple_repeat 2 104 0 2 1158 198 0 0 0 chr3 75194803 75194825 -84404958 + (GA)n Simple_repeat Simple_repeat 2 23 0 2 1158 2141 88 7 3 chr3 75194942 75195240 -84404543 - L1_Mus3 LINE L1 -5 6633 6335 2 1158 279 324 18 9 chr3 75197871 75197980 -84401803 - Charlie1 DNA MER1_type -2 2779 2670 2 1158 423 298 15 0 chr3 75198003 75198134 -84401649 - Charlie1 DNA MER1_type -2556 225 93 2 1158 1114 179 75 105 chr3 75200146 75200557 -84399226 - Lx9 LINE L1 -8 7636 7238 2 1158 639 175 0 23 chr3 75200560 75200689 -84399094 + Lx9 LINE L1 6882 7007 -637 2 1158 414 339 8 0 chr3 75201257 75201384 -84398399 + MLT1D LTR MaLR 1 128 -377 2 1158 2206 241 47 26 chr3 75201384 75202062 -84397721 - Lx7 LINE L1 -1329 6367 5676 2 1158 3917 227 26 143 chr3 75202070 75203550 -84396233 + Lx7 LINE L1 6385 7692 -4 2 1158 634 265 73 48 chr3 75203604 75203810 -84395973 + B3 SINE B2 6 216 0 2 1158 453 259 123 71 chr3 75203957 75204127 -84395656 + MLT1D LTR MaLR 248 426 -79 2 1158 1141 204 26 0 chr3 75204418 75204683 -84395100 + L1_Mur2 LINE L1 893 1164 -5922 2 1158 6696 164 10 12 chr3 75204685 75205965 -84393818 + L1_Mur2 LINE L1 3833 5109 -768 2 1158 1120 158 141 0 chr3 75205945 75206186 -84393597 + L1_Mur2 LINE L1 4754 5028 -849 2 1158 227 290 28 28 chr3 75206189 75206260 -84393523 + MER5B DNA MER1_type 45 115 -63 2 1158 796 339 28 25 chr3 75206591 75206625 -84393158 + B4A SINE B4 6 38 -254 2 1158 1109 244 148 19 chr3 75206625 75206742 -84393041 + MTD LTR MaLR 1 119 -300 3 1158 459 63 0 0 chr3 75206742 75206805 -84392978 + (TGGA)n Simple_repeat Simple_repeat 3 65 0 3 1158 1109 244 148 19 chr3 75206805 75207058 -84392725 + MTD LTR MaLR 120 419 0 3 1158 796 339 28 25 chr3 75207058 75207307 -84392476 + B4A SINE B4 39 290 -2 2 1158 524 301 0 8 chr3 75207383 75207517 -84392266 - ID_B1 SINE B4 0 224 92 3 1158 186 43 0 0 chr3 75209011 75209034 -84390749 + (CA)n Simple_repeat Simple_repeat 2 24 0 3 1158 6259 147 16 10 chr3 75209350 75210751 -84389032 - Lx LINE L1 -1 6653 5237 3 1158 2356 181 42 12 chr3 75210749 75211246 -84388537 + L1_Mur2 LINE L1 4718 5229 -648 3 1158 202 176 17 50 chr3 75211335 75211395 -84388388 + (TAAA)n Simple_repeat Simple_repeat 1 58 0 3 1158 1999 206 9 14 chr3 75211424 75211852 -84387931 - RMER20A LTR ERVK -90 426 1 3 1158 3269 197 19 61 chr3 75211852 75212766 -84387017 + L1_Mur3 LINE L1 1606 2480 -3400 3 1158 36057 31 1 0 chr3 75212777 75219637 -84380146 - L1Md_T LINE L1 0 6585 1 3 1158 3151 183 39 29 chr3 75219643 75219926 -84379857 + L1_Mur3 LINE L1 2478 2756 -3124 3 1158 2078 194 12 22 chr3 75219926 75220337 -84379446 + MTB_Mm LTR MaLR 1 407 0 3 1158 3151 183 39 29 chr3 75220337 75220847 -84378936 + L1_Mur3 LINE L1 2757 3279 -2601 3 1158 2967 46 7 25 chr3 75220852 75221255 -84378528 - RLTR13A3 LTR ERVK 0 978 583 3 1158 2626 19 0 0 chr3 75221255 75221571 -84378212 + L1Md_T LINE L1 5271 5586 -297 3 1158 8130 51 0 0 chr3 75221571 75222567 -84377216 + L1Md_T LINE L1 5587 6582 0 3 1158 3129 11 0 52 chr3 75222596 75222983 -84376800 + IAPLTR1_Mm LTR ERVK 1 367 0 3 1158 8576 56 78 70 chr3 75222983 75224278 -84375505 + IAPEz-int LTR ERVK 8 1313 -5168 3 1158 28918 19 1 1 chr3 75224277 75227551 -84372232 + IAPEz-int LTR ERVK 3210 6481 0 3 1158 3139 11 0 47 chr3 75227551 75227936 -84371847 + IAPLTR1_Mm LTR ERVK 1 367 0 3 1158 4200 71 10 35 chr3 75227939 75228541 -84371242 - RLTR13A3 LTR ERVK -391 587 1 3 1158 259 213 16 0 chr3 75228549 75228610 -84371173 + L1_Mur3 LINE L1 3287 3348 -2532 3 1158 3256 188 12 4 chr3 75228599 75229185 -84370598 + Lx4B LINE L1 6359 6935 -123 3 1158 816 241 97 18 chr3 75229183 75229411 -84370372 + Lx4B LINE L1 7204 7449 -11 3 1158 580 195 0 15 chr3 75229427 75229557 -84370226 + L1_Mur3 LINE L1 5303 5430 -450 3 1158 199 264 106 32 chr3 75230687 75230781 -84369002 - L2c LINE L2 0 3387 3287 3 1158 729 0 0 0 chr3 75231658 75231739 -84368044 + (GTTTG)n Simple_repeat Simple_repeat 1 81 0 3 1158 494 280 8 23 chr3 75231740 75231868 -84367915 - B1_Mus2 SINE Alu -20 127 2 3 1158 210 208 0 0 chr3 75232192 75232240 -84367543 + (TATATG)n Simple_repeat Simple_repeat 1 48 0 3 1158 445 311 35 25 chr3 75232254 75232452 -84367331 - B3 SINE B2 -14 202 3 3 1158 252 319 14 0 chr3 75232646 75232715 -84367068 + tRNA-Ala-GCY_ tRNA tRNA 3 72 -3 3 1158 312 299 15 23 chr3 75234515 75234645 -84365138 + (TATATG)n Simple_repeat Simple_repeat 4 132 0 3 1158 21 0 0 0 chr3 75235226 75235247 -84364536 + AT_rich Low_complexity Low_complexity 1 21 0 3 1159 195 42 0 0 chr3 75235390 75235414 -84364369 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 3 1159 528 301 19 7 chr3 75236068 75236222 -84363561 + LTR40a LTR ERVL 3 158 -361 3 1159 346 310 24 42 chr3 75236496 75236661 -84363122 + RSINE1 SINE B4 4 165 0 3 1159 562 318 74 20 chr3 75236749 75237051 -84362732 + MLT1A0 LTR MaLR 1 349 -41 3 1159 486 335 53 7 chr3 75237747 75237897 -84361886 + B3A SINE B2 15 171 -27 3 1159 530 76 2 11 chr3 75237940 75238034 -84361749 - L1Md_F2 LINE L1 -470 6097 6023 3 1159 2757 53 0 6 chr3 75238031 75238374 -84361409 + L1Md_F2 LINE L1 6099 6439 -143 3 1159 7810 42 9 9 chr3 75238371 75239750 -84360033 - L1Md_F2 LINE L1 -1 6581 5195 3 1159 9594 72 8 0 chr3 75239748 75241014 -84358769 + L1Md_F2 LINE L1 3917 5192 -691 3 1159 948 69 33 46 chr3 75241014 75241165 -84358618 + L1_Mus1 LINE L1 6419 6567 0 3 1159 266 328 73 16 chr3 75241666 75241790 -84357993 - Charlie4z DNA MER1_type -36 131 1 3 1159 371 304 50 14 chr3 75241854 75241994 -84357789 - B1F1 SINE Alu -3 146 2 3 1159 341 0 0 0 chr3 75242190 75242230 -84357553 - L1Md_A LINE L1 -444 6138 6099 3 1159 3314 39 17 0 chr3 75242230 75242636 -84357147 + L1Md_T LINE L1 6168 6580 -2 3 1159 1933 102 45 19 chr3 75243661 75243971 -84355812 + Lx3_Mus LINE L1 6682 6999 -10 3 1159 251 129 41 41 chr3 75244337 75244410 -84355373 + (CATATA)n Simple_repeat Simple_repeat 3 75 0 3 1159 3213 142 11 8 chr3 75244425 75244949 -84354834 + Lx4A LINE L1 6533 7058 0 3 1159 219 120 80 0 chr3 75245209 75245259 -84354524 + (TCTCTG)n Simple_repeat Simple_repeat 6 59 0 3 1159 670 158 12 12 chr3 75245259 75245432 -84354351 + CT-rich Low_complexity Low_complexity 3 175 0 3 1159 812 29 10 0 chr3 75245456 75245559 -84354224 + (TG)n Simple_repeat Simple_repeat 2 105 0 3 1159 266 26 53 0 chr3 75246690 75246728 -84353055 + (TTTG)n Simple_repeat Simple_repeat 1 40 0 3 1159 281 349 54 0 chr3 75246729 75246858 -84352925 - B1F SINE Alu -13 136 1 3 1159 246 62 0 0 chr3 75247745 75247777 -84352006 + (TG)n Simple_repeat Simple_repeat 1 32 0 3 1159 788 99 21 7 chr3 75248002 75248145 -84351638 + (TAGA)n Simple_repeat Simple_repeat 2 146 0 3 1159 274 160 0 20 chr3 75248253 75248304 -84351479 + MLT2B4 LTR ERVL 505 554 -2 3 1159 28 29 0 0 chr3 75249372 75249407 -84350376 + AT_rich Low_complexity Low_complexity 1 35 0 3 1159 1486 216 49 12 chr3 75249467 75249791 -84349992 - Lx5 LINE L1 -3 7047 6712 3 1159 1983 153 36 3 chr3 75249782 75250117 -84349666 + Lx4B LINE L1 6362 6707 -351 3 1159 1790 133 0 24 chr3 75250152 75250445 -84349338 + L1Md_F LINE L1 210 495 -6024 3 1159 12240 60 1 5 chr3 75250421 75252018 -84347765 + L1_Mm LINE L1 3859 5449 -434 3 1159 5847 48 1 0 chr3 75252018 75252733 -84347050 + L1Md_F2 LINE L1 5867 6582 0 3 1159 316 290 28 0 chr3 75253055 75253162 -84346621 + GA-rich Low_complexity Low_complexity 2 111 0 3 1159 616 218 131 11 chr3 75256014 75256190 -84343593 + MLT1D LTR MaLR 309 505 0 3 1159 510 343 69 0 chr3 75256326 75256542 -84343241 + MER82 DNA MER2_type 34 264 -389 3 1159 684 56 0 0 chr3 75256724 75256813 -84342970 + (GA)n Simple_repeat Simple_repeat 2 90 0 3 1159 453 120 0 0 chr3 75257399 75257474 -84342309 - L1_Mur2 LINE L1 -3269 2608 2534 3 1159 718 206 31 81 chr3 75257468 75257573 -84342210 + L1_Mur2 LINE L1 1943 2051 -3826 3 1159 670 32 21 0 chr3 75257573 75257666 -84342117 + (TC)n Simple_repeat Simple_repeat 2 96 0 3 1159 718 206 31 81 chr3 75257666 75257782 -84342001 + L1_Mur2 LINE L1 2052 2153 -3724 3 1159 6816 158 51 16 chr3 75257778 75259188 -84340595 + L1_Mur2 LINE L1 2962 4421 -1456 3 1159 2404 314 103 52 chr3 75261069 75261279 -84338504 - Lx8 LINE L1 -1 7472 7235 3 1159 234 0 0 0 chr3 75261279 75261305 -84338478 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 3 1159 2404 314 103 52 chr3 75261305 75262326 -84337457 - Lx8 LINE L1 -239 7234 6191 3 1159 495 0 0 0 chr3 75262326 75262381 -84337402 + (TG)n Simple_repeat Simple_repeat 2 56 0 3 1159 2404 314 103 52 chr3 75262381 75262465 -84337318 - Lx8 LINE L1 -1283 6190 6089 3 1159 876 313 70 29 chr3 75262661 75263243 -84336540 - L1_Rod LINE L1 -3506 2341 1736 3 1159 1112 95 0 0 chr3 75263397 75263544 -84336239 - B1_Mus1 SINE Alu 0 148 2 3 1159 36573 71 10 14 chr3 75264462 75270631 -84329152 - L1Md_F3 LINE L1 -10 6574 218 3 1159 554 282 101 61 chr3 75270897 75271225 -84328558 + RLTR15 LTR ERVK 1 341 -18 3 1159 393 296 100 39 chr3 75272426 75272824 -84326959 + L1MC4a LINE L1 6544 7010 -1032 3 1159 794 175 28 0 chr3 75272824 75272967 -84326816 + B1_Mur4 SINE Alu 2 148 -2 3 1159 303 305 82 72 chr3 75272967 75273047 -84326736 + L1MC4a LINE L1 7011 7076 -966 3 1159 414 291 51 0 chr3 75274797 75274914 -84324869 + B1F SINE Alu 1 123 -26 3 1159 288 0 0 0 chr3 75275013 75275045 -84324738 + (TTGG)n Simple_repeat Simple_repeat 4 35 0 3 1159 186 71 0 0 chr3 75275059 75275087 -84324696 + (GTTTG)n Simple_repeat Simple_repeat 1 28 0 3 1159 277 318 103 0 chr3 75275363 75275470 -84324313 + ORR1E LTR MaLR 77 194 -165 3 1159 249 350 20 20 chr3 75275553 75275655 -84324128 + ORR1E LTR MaLR 268 369 -10 3 1159 187 340 95 11 chr3 75275876 75275971 -84323812 + MIRc SINE MIR 65 167 -101 3 1159 743 0 11 0 chr3 75276608 75276695 -84323088 + (TAGA)n Simple_repeat Simple_repeat 2 89 0 3 1159 312 222 11 0 chr3 75277103 75277193 -84322590 - Lx9 LINE L1 -1 7643 7553 3 1159 471 35 0 0 chr3 75277234 75277291 -84322492 + (CA)n Simple_repeat Simple_repeat 1 57 0 3 1159 2942 206 157 9 chr3 75277298 75278367 -84321416 + Lx6 LINE L1 4971 6210 -1250 3 1159 1507 213 25 75 chr3 75279617 75280054 -84319729 + RMER1B Other Other 647 1061 -5 3 1159 217 294 21 21 chr3 75280099 75280193 -84319590 + (CATATA)n Simple_repeat Simple_repeat 3 96 0 3 1159 185 283 351 20 chr3 75281150 75281298 -84318485 - MIR SINE MIR -29 233 37 3 1159 244 244 22 0 chr3 75281502 75281592 -84318191 + CT-rich Low_complexity Low_complexity 1 92 0 3 1159 908 294 92 0 chr3 75281641 75281869 -84317914 - B4A SINE B4 -6 286 38 3 1159 207 186 0 0 chr3 75281944 75281987 -84317796 + (TTTA)n Simple_repeat Simple_repeat 1 43 0 3 1159 472 329 0 30 chr3 75281987 75282153 -84317630 - RSINE1 SINE B4 0 165 5 3 1159 241 153 28 0 chr3 75282153 75282225 -84317558 + T-rich Low_complexity Low_complexity 2 75 0 3 1159 198 0 0 0 chr3 75282399 75282421 -84317362 + (T)n Simple_repeat Simple_repeat 1 22 0 3 1159 2936 58 8 23 chr3 75282509 75282900 -84316883 - L1_Mus1 LINE L1 -4 6563 6179 3 1159 221 148 33 0 chr3 75283919 75283980 -84315803 + (TCTCTG)n Simple_repeat Simple_repeat 2 64 0 3 1159 180 77 0 0 chr3 75283987 75284013 -84315770 + (TG)n Simple_repeat Simple_repeat 1 26 0 3 1159 316 331 189 8 chr3 75284013 75284135 -84315648 - B3A SINE B2 -50 148 5 3 1159 24 53 0 0 chr3 75284450 75284488 -84315295 + AT_rich Low_complexity Low_complexity 1 38 0 3 1159 405 0 0 0 chr3 75285034 75285079 -84314704 + (TG)n Simple_repeat Simple_repeat 2 46 0 3 1159 639 284 221 18 chr3 75285100 75285322 -84314461 - B4 SINE B4 -16 276 10 3 1159 31820 78 14 3 chr3 75286257 75289347 -84310436 - L1Md_F2 LINE L1 -3 6579 3486 3 1159 216 0 0 0 chr3 75289347 75289371 -84310412 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 3 1159 31820 92 23 8 chr3 75289371 75292392 -84307391 - L1Md_F2 LINE L1 -2398 3485 386 3 1159 36 0 0 0 chr3 75292528 75292564 -84307219 + AT_rich Low_complexity Low_complexity 1 36 0 3 1159 247 158 35 0 chr3 75292748 75292805 -84306978 + (TTG)n Simple_repeat Simple_repeat 3 61 0 3 1159 540 0 0 0 chr3 75293257 75293317 -84306466 + (TC)n Simple_repeat Simple_repeat 1 60 0 3 1159 294 395 31 44 chr3 75293580 75293805 -84305978 - ID_B1 SINE B4 0 224 3 3 1159 267 366 20 0 chr3 75295410 75295511 -84304272 + MTEa LTR MaLR 3 105 -274 4 1159 540 111 0 0 chr3 75296554 75296635 -84303148 + (T)n Simple_repeat Simple_repeat 1 81 0 4 1159 1215 48 0 0 chr3 75296635 75296781 -84303002 - B1_Mus2 SINE Alu 0 147 2 4 1159 796 287 63 23 chr3 75296849 75297198 -84302585 - Lx8 LINE L1 -109 7364 7002 4 1159 36 23 0 0 chr3 75297205 75297248 -84302535 + AT_rich Low_complexity Low_complexity 1 43 0 4 1159 22 35 0 0 chr3 75297564 75297593 -84302190 + AT_rich Low_complexity Low_complexity 1 29 0 4 1159 450 335 25 19 chr3 75299234 75299395 -84300388 + MER5B DNA MER1_type 1 162 -16 4 1159 341 288 198 9 chr3 75299621 75299838 -84299945 + L1MC4 LINE L1 7169 7426 -616 4 1159 874 271 107 36 chr3 75299896 75300337 -84299446 + Lx8 LINE L1 7001 7472 -1 4 1159 300 102 0 0 chr3 75300537 75300586 -84299197 + (CA)n Simple_repeat Simple_repeat 1 49 0 4 1159 243 0 0 0 chr3 75301268 75301295 -84298488 + (A)n Simple_repeat Simple_repeat 1 27 0 4 1159 513 47 0 0 chr3 75301958 75302022 -84297761 + (TTCC)n Simple_repeat Simple_repeat 2 65 0 4 1159 255 283 48 19 chr3 75302024 75302233 -84297550 + RMER17A2 LTR ERVK 295 509 -397 4 1159 207 0 0 0 chr3 75302724 75302747 -84297036 + (A)n Simple_repeat Simple_repeat 1 23 0 4 1159 498 33 0 0 chr3 75302912 75302972 -84296811 + (GA)n Simple_repeat Simple_repeat 1 60 0 4 1159 685 112 32 8 chr3 75304067 75304193 -84295590 - Lx2 LINE L1 -3 6994 6866 4 1159 495 0 0 0 chr3 75304423 75304478 -84295305 + (TC)n Simple_repeat Simple_repeat 2 56 0 4 1159 737 250 17 23 chr3 75304596 75304772 -84295011 + MTEb LTR MaLR 1 175 -204 4 1159 804 95 0 51 chr3 75304778 75304955 -84294828 + (TTCTC)n Simple_repeat Simple_repeat 2 169 0 4 1159 1199 221 90 28 chr3 75304962 75305384 -84294399 + MT2A LTR ERVL 1 531 -70 4 1159 363 278 141 20 chr3 75305382 75305481 -84294302 + MTEb LTR MaLR 217 327 -52 4 1159 1360 232 40 9 chr3 75305725 75306073 -84293710 - Lx6 LINE L1 -4 7456 7098 4 1159 258 32 0 0 chr3 75306566 75306597 -84293186 + (TCTG)n Simple_repeat Simple_repeat 2 32 0 4 1159 329 361 28 7 chr3 75306609 75306754 -84293029 - RSINE1 SINE B4 -13 152 5 4 1159 986 295 61 4 chr3 75306827 75307089 -84292694 - B4A SINE B4 -6 286 10 4 1159 790 184 186 36 chr3 75307160 75307357 -84292426 - MTD LTR MaLR -130 289 32 4 1159 213 65 0 0 chr3 75307461 75307492 -84292291 + (CAAAAA)n Simple_repeat Simple_repeat 2 32 0 4 1159 323 290 110 48 chr3 75307533 75307777 -84292006 + RLTR41 LTR ERV1 191 486 -21 4 1159 255 258 48 114 chr3 75307794 75307899 -84291884 - MTD LTR MaLR -321 98 1 4 1159 364 279 92 80 chr3 75307931 75308332 -84291451 + MLT2B4 LTR ERVL 71 545 -9 4 1159 23 0 0 0 chr3 75308629 75308652 -84291131 + AT_rich Low_complexity Low_complexity 1 23 0 4 1159 930 71 0 0 chr3 75308913 75309040 -84290743 - Lx3_Mus LINE L1 -1158 5851 5725 4 1159 8101 75 12 37 chr3 75309041 75310221 -84289562 + Lx3_Mus LINE L1 5854 7003 -6 4 1159 7555 201 30 14 chr3 75310785 75312172 -84287611 - L1_Mur3 LINE L1 -633 5247 3859 4 1159 351 0 0 0 chr3 75312172 75312211 -84287572 + (TG)n Simple_repeat Simple_repeat 2 40 0 4 1159 7555 201 30 14 chr3 75312211 75312686 -84287097 - L1_Mur3 LINE L1 -2022 3858 3357 4 1159 801 225 105 0 chr3 75312671 75312880 -84286903 + Lx6 LINE L1 6225 6455 -1005 4 1159 387 249 65 24 chr3 75312880 75312971 -84286812 - PB1D10 SINE Alu -51 99 3 4 1159 230 212 102 91 chr3 75312893 75312981 -84286802 - MT2B2 LTR ERVL -344 240 152 4 1159 541 304 30 0 chr3 75313311 75313446 -84286337 + RSINE1 SINE B4 11 149 -16 4 1159 405 58 0 0 chr3 75313458 75313510 -84286273 + (CA)n Simple_repeat Simple_repeat 1 52 0 4 1159 692 300 100 22 chr3 75314094 75314363 -84285420 + B4 SINE B4 1 290 -2 4 1159 366 294 232 18 chr3 75314816 75315148 -84284635 + L1MC4a LINE L1 5501 5903 -1979 4 1159 192 40 0 0 chr3 75315188 75315213 -84284570 + (CA)n Simple_repeat Simple_repeat 2 26 0 4 1159 519 17 0 0 chr3 75315213 75315272 -84284511 + (GA)n Simple_repeat Simple_repeat 2 61 0 4 1159 335 256 12 49 chr3 75315291 75315373 -84284410 + PB1D10 SINE Alu 10 88 -29 4 1159 253 288 14 14 chr3 75315849 75315923 -84283860 + L1MB8 LINE L1 5500 5573 -611 4 1159 317 327 139 26 chr3 75316010 75316184 -84283599 + L1MB8 LINE L1 5713 5906 -272 4 1159 1144 204 92 108 chr3 75316184 75316563 -84283220 + ORR1D1 LTR MaLR 2 374 0 4 1159 317 327 139 26 chr3 75316563 75316655 -84283128 + L1MB8 LINE L1 5907 6008 -170 4 1159 5410 10 0 7 chr3 75318371 75319004 -84280779 + L1Md_T LINE L1 5977 6582 0 4 1159 309 325 156 0 chr3 75319126 75319280 -84280503 + L1MC4a LINE L1 7329 7506 -536 4 1159 891 252 34 121 chr3 75322116 75322504 -84277279 + Lx6 LINE L1 7078 7431 -29 4 1159 21 57 0 0 chr3 75322997 75323032 -84276751 + AT_rich Low_complexity Low_complexity 1 35 0 4 1159 1025 50 14 0 chr3 75323374 75323513 -84276270 - L1_Mus1 LINE L1 -161 6406 6266 4 1159 969 49 0 72 chr3 75323513 75323666 -84276117 + L1Md_F2 LINE L1 6428 6569 -13 4 1159 277 347 46 35 chr3 75323805 75323978 -84275805 + MER5B DNA MER1_type 4 178 0 4 1159 352 284 23 0 chr3 75324461 75324549 -84275234 - RSINE1 SINE B4 -73 92 3 4 1159 293 264 35 78 chr3 75325130 75325144 -84274639 - B4A SINE B4 -105 187 125 4 1159 307 177 43 151 chr3 75325144 75325237 -84274546 - B1_Mus2 SINE Alu -64 83 1 4 1159 570 282 125 25 chr3 75325268 75325468 -84274315 - ID_B1 SINE B4 -2 222 3 4 1159 249 301 140 20 chr3 75326203 75326403 -84273380 + L1M3e LINE L1 41 264 -6766 4 1159 837 282 89 35 chr3 75327570 75328335 -84271448 + L1MA7 LINE L1 5304 6128 -172 4 1159 793 181 220 0 chr3 75329320 75329502 -84270281 - URR1A DNA MER1_type -4 222 1 4 1159 1012 186 255 30 chr3 75330401 75330738 -84269045 + MTD LTR MaLR 7 419 0 4 1159 924 135 399 31 chr3 75331017 75331305 -84268478 - ORR1B1 LTR MaLR 0 394 1 4 1159 943 158 174 0 chr3 75332901 75333097 -84266686 + RMER1A Other Other 801 1030 0 4 1159 576 53 0 0 chr3 75333694 75333770 -84266013 + (TG)n Simple_repeat Simple_repeat 2 77 0 4 1159 270 354 38 30 chr3 75333804 75333935 -84265848 - RSINE1 SINE B4 -31 134 3 4 1159 210 162 0 0 chr3 75334308 75334345 -84265438 + T-rich Low_complexity Low_complexity 1 37 0 4 1159 851 292 125 53 chr3 75334901 75335332 -84264451 - MER119 DNA MER1_type -95 488 27 4 1159 1200 115 125 0 chr3 75335357 75335557 -84264226 - URR1B DNA MER1_type 0 225 1 4 1159 657 283 26 32 chr3 75336030 75336220 -84263563 - B3A SINE B2 -5 193 5 4 1159 297 339 25 42 chr3 75336397 75336517 -84263266 + PB1 SINE Alu 7 124 -3 4 1159 24 0 0 0 chr3 75337681 75337705 -84262078 + AT_rich Low_complexity Low_complexity 1 24 0 4 1159 249 33 0 0 chr3 75338014 75338044 -84261739 + (CAAAA)n Simple_repeat Simple_repeat 5 34 0 4 1159 403 305 159 28 chr3 75338133 75338315 -84261468 + B3 SINE B2 1 206 -10 4 1159 2181 64 50 13 chr3 75340972 75341274 -84258509 - Lx2A1 LINE L1 -1109 5899 5587 4 1159 5610 156 50 4 chr3 75341277 75342326 -84257457 - L1_Mur2 LINE L1 -745 5132 4035 4 1159 34 24 0 0 chr3 75342444 75342485 -84257298 + AT_rich Low_complexity Low_complexity 1 41 0 4 1159 240 350 48 10 chr3 75343699 75343803 -84255980 + MLT1J2 LTR MaLR 40 147 -301 4 1159 189 0 0 0 chr3 75344376 75344397 -84255386 + (A)n Simple_repeat Simple_repeat 1 21 0 4 1159 3544 46 9 0 chr3 75345727 75346164 -84253619 + L1_Mus2 LINE L1 6126 6566 0 4 1159 201 331 26 92 chr3 75346940 75347093 -84252690 - L3 LINE CR1 -89 4400 4258 4 1159 296 298 71 0 chr3 75347267 75347351 -84252432 + B1_Mur3 SINE Alu 10 99 -50 4 1159 222 317 113 32 chr3 75347351 75347391 -84252392 + ID_B1 SINE B4 91 224 0 4 1159 632 318 42 72 chr3 75347605 75347869 -84251914 + B4 SINE B4 11 266 -26 4 1159 288 0 0 0 chr3 75347885 75347917 -84251866 + (CA)n Simple_repeat Simple_repeat 2 33 0 4 1159 481 252 81 7 chr3 75349055 75349191 -84250592 - B1_Mur2 SINE Alu -1 148 3 4 1159 895 151 15 8 chr3 75349461 75349718 -84250065 + GA-rich Low_complexity Low_complexity 1 258 0 4 1159 241 176 154 77 chr3 75351301 75351418 -84248365 + MLT1-int LTR MaLR 541 666 -705 4 1159 249 108 0 0 chr3 75351418 75351455 -84248328 + (A)n Simple_repeat Simple_repeat 1 37 0 4 1159 267 54 0 0 chr3 75352165 75352202 -84247581 + (TG)n Simple_repeat Simple_repeat 2 38 0 4 1159 2367 98 23 0 chr3 75352510 75352858 -84246925 + L1_Mus4 LINE L1 6276 6631 -5 4 1159 211 365 96 14 chr3 75353386 75353500 -84246283 + MIRb SINE MIR 128 249 -19 4 1159 300 292 11 22 chr3 75353584 75353675 -84246108 - MER96 DNA hAT -79 96 7 4 1159 577 212 206 6 chr3 75353911 75354091 -84245692 + B3 SINE B2 1 216 0 4 1159 471 331 78 26 chr3 75356202 75356394 -84243389 + MIR SINE MIR 13 214 -48 4 1159 870 162 0 14 chr3 75357618 75357762 -84242021 - B1_Mus1 SINE Alu -6 142 1 4 1159 23 0 0 0 chr3 75359246 75359269 -84240514 + AT_rich Low_complexity Low_complexity 1 23 0 4 1159 243 0 0 0 chr3 75364633 75364660 -84235123 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 4 1159 805 74 0 29 chr3 75365154 75365293 -84234490 + L1Md_F2 LINE L1 6448 6582 0 4 1160 537 271 0 0 chr3 75367051 75367173 -84232610 - ID_B1 SINE B4 -4 220 99 4 1160 370 277 10 21 chr3 75367770 75367866 -84231917 + RSINE1 SINE B4 30 124 -41 4 1160 332 211 0 27 chr3 75367925 75368037 -84231746 + CT-rich Low_complexity Low_complexity 1 109 0 4 1160 723 101 28 0 chr3 75368145 75368254 -84231529 + B1_Mus2 SINE Alu 32 143 -4 4 1160 21 0 0 0 chr3 75368260 75368281 -84231502 + AT_rich Low_complexity Low_complexity 1 21 0 5 1160 2136 148 69 7 chr3 75368379 75368801 -84230982 - RLTR31B_Mm LTR ERVK 0 557 1 5 1160 427 321 53 83 chr3 75368938 75369166 -84230617 + B4A SINE B4 2 222 -70 5 1160 571 230 50 14 chr3 75369308 75369449 -84230334 + B1_Mur2 SINE Alu 3 148 -1 5 1160 1392 75 27 0 chr3 75370086 75370272 -84229511 + B2_Mm2 SINE B2 1 191 -4 5 1160 399 294 0 10 chr3 75370454 75370557 -84229226 + PB1D10 SINE Alu 5 106 -11 5 1160 1128 22 0 0 chr3 75371012 75371147 -84228636 + (TC)n Simple_repeat Simple_repeat 2 136 0 5 1160 315 0 0 0 chr3 75371147 75371181 -84228602 + (TG)n Simple_repeat Simple_repeat 2 36 0 5 1160 432 104 0 0 chr3 75371280 75371347 -84228436 + (TG)n Simple_repeat Simple_repeat 1 67 0 5 1160 253 140 57 57 chr3 75371533 75371586 -84228197 + MER58A DNA MER1_type 52 104 -120 5 1160 1087 102 0 13 chr3 75372329 75372478 -84227305 + B1_Mus1 SINE Alu 2 148 0 5 1160 37 39 0 0 chr3 75372733 75372784 -84226999 + AT_rich Low_complexity Low_complexity 1 51 0 5 1160 345 372 19 57 chr3 75373399 75373610 -84226173 + B4A SINE B4 2 204 -88 5 1160 309 193 241 72 chr3 75373673 75373880 -84225903 + L1M4 LINE L1 4372 4613 -1533 5 1160 431 267 115 38 chr3 75373972 75374155 -84225628 + B3A SINE B2 2 198 0 5 1160 486 282 34 57 chr3 75374197 75374460 -84225323 + L1M4 LINE L1 4789 5045 -1101 5 1160 344 243 190 32 chr3 75374512 75374733 -84225050 + L1M4 LINE L1 5137 5392 -754 5 1160 2393 237 43 77 chr3 75374733 75375413 -84224370 + Lx6 LINE L1 6792 7448 -12 5 1160 576 282 52 38 chr3 75375424 75375715 -84224068 + L1M4 LINE L1 5397 5691 -493 5 1160 382 294 27 9 chr3 75375778 75375888 -84223895 - B3A SINE B2 -86 112 1 5 1160 726 284 70 0 chr3 75376149 75376350 -84223433 - ID_B1 SINE B4 0 224 10 5 1160 316 246 0 0 chr3 75377387 75377456 -84222327 + ID4 SINE ID 4 72 -11 5 1160 483 18 0 0 chr3 75378030 75378086 -84221697 + (TG)n Simple_repeat Simple_repeat 2 57 0 5 1160 249 345 35 21 chr3 75378537 75378679 -84221104 - MIR SINE MIR -26 236 93 5 1160 859 297 41 41 chr3 75378922 75379189 -84220594 + B4A SINE B4 26 292 0 5 1160 1314 249 41 60 chr3 75379721 75380089 -84219694 + MTE2b LTR MaLR 5 365 -14 5 1160 1457 236 104 5 chr3 75381850 75382225 -84217558 - MTD LTR MaLR -2 417 6 5 1160 24 0 0 0 chr3 75382722 75382746 -84217037 + AT_rich Low_complexity Low_complexity 1 24 0 5 1160 389 20 0 20 chr3 75382804 75382855 -84216928 + (TTG)n Simple_repeat Simple_repeat 2 51 0 5 1160 38 0 0 0 chr3 75383030 75383068 -84216715 + AT_rich Low_complexity Low_complexity 1 38 0 5 1160 2405 59 3 24 chr3 75383096 75383425 -84216358 - L1_Mus1 LINE L1 0 6567 6246 5 1160 644 200 31 55 chr3 75383693 75383820 -84215963 + B1F SINE Alu 16 139 -10 5 1160 188 163 23 0 chr3 75383826 75383869 -84215914 + (TATATG)n Simple_repeat Simple_repeat 4 47 0 5 1160 1141 71 0 0 chr3 75384147 75384288 -84215495 - B1_Mus1 SINE Alu -6 142 2 5 1160 234 0 0 0 chr3 75384388 75384414 -84215369 + (TTAA)n Simple_repeat Simple_repeat 4 29 0 5 1160 203 0 37 0 chr3 75384668 75384695 -84215088 + (CAA)n Simple_repeat Simple_repeat 1 28 0 5 1160 231 269 0 37 chr3 75385329 75385410 -84214373 + C-rich Low_complexity Low_complexity 5 82 0 5 1160 718 251 47 12 chr3 75386141 75386395 -84213388 + L1MC4a LINE L1 7587 7849 -33 5 1160 196 383 47 8 chr3 75389124 75389253 -84210530 + L2 LINE L2 1558 1691 -1728 5 1160 184 289 19 0 chr3 75390053 75390105 -84209678 - L2b LINE L2 -69 3306 3254 5 1160 4357 111 12 3 chr3 75390333 75390975 -84208808 + Lx2 LINE L1 6348 6995 -2 5 1160 23 33 0 0 chr3 75391768 75391798 -84207985 + AT_rich Low_complexity Low_complexity 1 30 0 5 1160 2476 229 84 25 chr3 75391910 75392520 -84207263 + RMER13A LTR ERVK 163 808 -52 5 1160 25 51 0 0 chr3 75392695 75392734 -84207049 + AT_rich Low_complexity Low_complexity 1 39 0 5 1160 975 244 9 5 chr3 75393342 75393552 -84206231 - MTD LTR MaLR -13 406 196 5 1160 5971 50 0 0 chr3 75393553 75394287 -84205496 - L1Md_F2 LINE L1 -12 6570 5837 5 1160 6907 50 0 0 chr3 75394287 75395129 -84204654 + L1Md_F2 LINE L1 5011 5852 -31 5 1160 720 254 72 0 chr3 75395129 75395322 -84204461 - MTD LTR MaLR -208 211 5 5 1160 328 315 149 34 chr3 75395323 75395471 -84204312 - B3A SINE B2 -29 169 5 5 1160 540 182 14 7 chr3 75395659 75395797 -84203986 + (TA)n Simple_repeat Simple_repeat 2 140 0 5 1160 213 39 0 0 chr3 75395887 75395913 -84203870 + (TATG)n Simple_repeat Simple_repeat 2 27 0 5 1160 315 0 0 0 chr3 75396032 75396067 -84203716 + (TTGG)n Simple_repeat Simple_repeat 2 36 0 5 1160 559 338 14 9 chr3 75396067 75396279 -84203504 - ID_B1 SINE B4 -9 215 3 5 1160 756 283 76 31 chr3 75396997 75397314 -84202469 + L1MC4a LINE L1 5550 5880 -2002 5 1160 675 327 20 10 chr3 75397482 75397686 -84202097 + ID_B1 SINE B4 9 214 -10 5 1160 306 301 0 0 chr3 75398163 75398266 -84201517 + L1_Mm LINE L1 4443 4545 -1338 5 1160 306 106 0 0 chr3 75398779 75398826 -84200957 + (TC)n Simple_repeat Simple_repeat 2 48 0 5 1160 1756 162 87 89 chr3 75398979 75399252 -84200531 - RMER16 LTR ERVK -87 446 153 5 1160 1147 61 7 0 chr3 75399252 75399399 -84200384 + B1_Mus1 SINE Alu 1 148 0 5 1160 1756 162 87 89 chr3 75399399 75399572 -84200211 - RMER16 LTR ERVK -381 152 1 5 1160 7777 90 21 2 chr3 75399572 75400658 -84199125 - RMER16-int LTR ERVK 0 5406 4300 5 1160 714 320 6 11 chr3 75400719 75400893 -84198890 + B4A SINE B4 25 197 -95 5 1160 183 80 0 0 chr3 75400912 75400937 -84198846 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 5 1160 222 319 110 17 chr3 75401200 75401318 -84198465 + L3b LINE CR1 218 346 -136 5 1160 462 244 32 32 chr3 75401847 75402033 -84197750 + Lx9 LINE L1 7458 7643 -1 5 1160 277 94 18 36 chr3 75402098 75402153 -84197630 + (GGAAA)n Simple_repeat Simple_repeat 2 55 0 5 1160 297 0 0 0 chr3 75403076 75403109 -84196674 + (TG)n Simple_repeat Simple_repeat 1 33 0 5 1160 263 339 64 32 chr3 75403232 75403357 -84196426 + L2a LINE L2 3298 3426 0 5 1160 270 0 0 0 chr3 75403707 75403737 -84196046 + (CA)n Simple_repeat Simple_repeat 2 31 0 5 1160 201 121 0 0 chr3 75404019 75404052 -84195731 + (T)n Simple_repeat Simple_repeat 1 33 0 5 1160 1051 87 0 0 chr3 75404062 75404200 -84195583 - B1_Mm SINE Alu -9 138 1 5 1160 335 261 119 0 chr3 75404286 75404420 -84195363 - MER3 DNA MER1_type -18 191 42 5 1160 1027 269 151 26 chr3 75404473 75404976 -84194807 + Lx8 LINE L1 6901 7466 -7 5 1160 646 324 65 44 chr3 75404995 75405289 -84194494 + MER31B LTR ERV1 4 303 -163 5 1160 340 238 14 0 chr3 75405296 75405443 -84194340 + (CA)n Simple_repeat Simple_repeat 2 150 0 5 1160 237 164 117 52 chr3 75405470 75405547 -84194236 + MER31B LTR ERV1 365 446 -20 5 1160 206 81 27 0 chr3 75405577 75405614 -84194169 + (TTTTTG)n Simple_repeat Simple_repeat 2 39 0 5 1160 8879 93 36 5 chr3 75405632 75407522 -84192261 - Lx3_Mus LINE L1 -8 7001 5041 5 1160 205 178 0 0 chr3 75407542 75407587 -84192196 + A-rich Low_complexity Low_complexity 2 46 0 5 1160 21 57 0 0 chr3 75408253 75408288 -84191495 + AT_rich Low_complexity Low_complexity 1 35 0 5 1160 283 248 84 50 chr3 75408304 75408423 -84191360 - LTR37A LTR ERV1 -41 385 263 5 1160 379 305 94 58 chr3 75408509 75408732 -84191051 - LTR37A LTR ERV1 -189 237 7 5 1160 445 236 115 24 chr3 75409068 75409233 -84190550 - LTR48 LTR ERV1 -60 727 548 5 1160 269 354 92 12 chr3 75409240 75409403 -84190380 - LTR29 LTR ERV1 -306 316 141 5 1160 313 271 62 10 chr3 75409523 75409620 -84190163 - Kanga11a DNA Tc2 -839 131 30 5 1160 193 196 64 21 chr3 75409755 75409802 -84189981 + L4 LINE RTE 619 667 -1362 5 1160 447 283 108 20 chr3 75410258 75410406 -84189377 - RSINE1 SINE B4 -1 164 4 5 1160 567 311 35 15 chr3 75410414 75410613 -84189170 - B3A SINE B2 -11 205 3 5 1160 639 39 0 0 chr3 75412290 75412368 -84187415 + (CA)n Simple_repeat Simple_repeat 2 79 0 5 1160 247 321 59 37 chr3 75413187 75413323 -84186460 - MIRb SINE MIR -51 217 79 5 1160 535 278 8 0 chr3 75413817 75413943 -84185840 - RSINE1 SINE B4 -31 134 8 5 1160 451 261 96 37 chr3 75413964 75414151 -84185632 - B3A SINE B2 0 198 1 5 1160 1471 225 183 32 chr3 75414187 75414596 -84185187 - RLTR33 LTR ERVK -33 645 175 5 1160 334 327 25 51 chr3 75414738 75414896 -84184887 + RSINE1 SINE B4 11 164 -1 5 1160 282 29 0 0 chr3 75415700 75415735 -84184048 + (TG)n Simple_repeat Simple_repeat 1 35 0 5 1160 471 107 0 0 chr3 75415735 75415819 -84183964 + (GA)n Simple_repeat Simple_repeat 2 85 0 5 1160 379 317 36 42 chr3 75416006 75416174 -84183609 + MTD LTR MaLR 36 202 -217 5 1160 536 150 6 125 chr3 75416192 75416352 -84183431 + Lx2 LINE L1 6788 6928 -69 5 1160 183 129 0 0 chr3 75416373 75416404 -84183379 + (TGGG)n Simple_repeat Simple_repeat 1 31 0 5 1160 614 173 7 50 chr3 75416422 75416562 -84183221 + Lx2 LINE L1 6858 6991 -6 5 1160 332 208 42 0 chr3 75416598 75416670 -84183113 + MTD LTR MaLR 345 419 0 5 1160 28 0 0 0 chr3 75416944 75416972 -84182811 + AT_rich Low_complexity Low_complexity 1 28 0 5 1160 28 79 0 0 chr3 75417692 75417755 -84182028 + AT_rich Low_complexity Low_complexity 1 63 0 5 1160 180 0 0 0 chr3 75417968 75417988 -84181795 + (CA)n Simple_repeat Simple_repeat 1 20 0 5 1160 594 211 199 6 chr3 75418965 75419146 -84180637 - B3 SINE B2 0 216 1 5 1160 728 206 99 35 chr3 75419939 75420140 -84179643 + B3 SINE B2 2 215 -1 5 1160 340 337 82 64 chr3 75420949 75421231 -84178552 + B4 SINE B4 2 288 -4 5 1160 1791 153 20 20 chr3 75421366 75421712 -84178071 - Lx3_Mus LINE L1 0 7009 6664 5 1160 530 272 111 0 chr3 75422757 75422937 -84176846 - B3 SINE B2 -12 204 5 5 1160 26 0 0 0 chr3 75423013 75423039 -84176744 + AT_rich Low_complexity Low_complexity 1 26 0 5 1160 216 261 11 17 chr3 75423331 75423507 -84176276 + CT-rich Low_complexity Low_complexity 1 174 0 6 1160 354 156 0 0 chr3 75424239 75424303 -84175480 + (TA)n Simple_repeat Simple_repeat 2 65 0 6 1160 21 57 0 0 chr3 75424362 75424397 -84175386 + AT_rich Low_complexity Low_complexity 1 35 0 6 1160 21 36 0 0 chr3 75424415 75424443 -84175340 + AT_rich Low_complexity Low_complexity 1 28 0 6 1160 739 276 22 0 chr3 75425312 75425493 -84174290 + ID_B1 SINE B4 3 187 -37 6 1160 182 65 0 61 chr3 75425585 75425618 -84174165 + (TTTTG)n Simple_repeat Simple_repeat 3 33 0 6 1160 265 146 0 0 chr3 75427001 75427042 -84172741 - RSINE1 SINE B4 -122 43 3 6 1160 186 43 0 0 chr3 75427370 75427393 -84172390 + (CAAAAA)n Simple_repeat Simple_repeat 3 25 0 6 1160 438 310 7 21 chr3 75427453 75427598 -84172185 + Lx7 LINE L1 7097 7239 -457 6 1160 22 35 0 0 chr3 75428572 75428601 -84171182 + AT_rich Low_complexity Low_complexity 1 29 0 6 1160 185 140 0 23 chr3 75428821 75428865 -84170918 + GA-rich Low_complexity Low_complexity 2 44 0 6 1160 706 179 76 13 chr3 75429884 75430042 -84169741 - Lx4B LINE L1 -585 6473 6306 6 1160 4526 153 40 12 chr3 75430048 75430889 -84168894 - L1_Mur2 LINE L1 -209 5668 4804 6 1160 695 279 58 5 chr3 75431148 75431353 -84168430 - B3 SINE B2 0 216 1 6 1160 312 277 29 19 chr3 75431517 75431620 -84168163 + MER20 DNA MER1_type 113 216 -3 6 1160 2637 67 6 14 chr3 75431816 75432165 -84167618 - ORR1A0 LTR MaLR 0 346 1 6 1160 490 29 0 29 chr3 75432223 75432293 -84167490 + (TG)n Simple_repeat Simple_repeat 2 69 0 6 1160 830 270 57 13 chr3 75432326 75432555 -84167228 - B4A SINE B4 -43 249 11 6 1160 27 29 0 0 chr3 75432634 75432668 -84167115 + AT_rich Low_complexity Low_complexity 1 34 0 6 1160 180 111 0 0 chr3 75435549 75435576 -84164207 + (A)n Simple_repeat Simple_repeat 1 27 0 6 1160 729 256 75 35 chr3 75435597 75435864 -84163919 + B4A SINE B4 24 292 0 6 1160 186 43 0 0 chr3 75435935 75435958 -84163825 + (CTTTG)n Simple_repeat Simple_repeat 3 25 0 6 1160 5256 116 22 10 chr3 75436166 75436978 -84162805 - Lx3C LINE L1 -16 6960 6139 6 1160 573 254 21 7 chr3 75438086 75438229 -84161554 - RSINE1 SINE B4 -16 149 5 6 1160 312 254 165 46 chr3 75438441 75438510 -84161273 - L1MA6 LINE L1 -79 6221 6152 6 1160 195 69 0 0 chr3 75438510 75438539 -84161244 + (CAA)n Simple_repeat Simple_repeat 2 30 0 6 1160 312 254 165 46 chr3 75438539 75438663 -84161120 - L1MA6 LINE L1 -149 6151 6005 6 1160 480 48 0 0 chr3 75439475 75439538 -84160245 + (TG)n Simple_repeat Simple_repeat 2 64 0 6 1160 563 245 213 4 chr3 75439578 75439808 -84159975 - B4A SINE B4 -13 279 2 6 1160 513 227 8 0 chr3 75440101 75440220 -84159563 + Lx9 LINE L1 7357 7476 -168 6 1160 302 107 18 0 chr3 75440220 75440276 -84159507 + (TA)n Simple_repeat Simple_repeat 1 57 0 6 1160 212 208 21 0 chr3 75440356 75440404 -84159379 + (TATATG)n Simple_repeat Simple_repeat 6 54 0 6 1160 332 247 26 0 chr3 75440474 75440551 -84159232 - MLT1B LTR MaLR -104 286 208 6 1160 573 316 55 39 chr3 75440780 75441037 -84158746 - MLT2D LTR ERVL -153 261 1 6 1160 254 350 159 0 chr3 75441043 75441206 -84158577 - MLT1B LTR MaLR -187 203 15 6 1160 197 33 33 0 chr3 75442349 75442379 -84157404 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 6 1160 604 212 50 14 chr3 75442383 75442522 -84157261 - B1_Mus1 SINE Alu -4 144 1 6 1160 683 297 40 73 chr3 75442645 75442946 -84156837 - B4A SINE B4 -1 291 1 6 1160 1885 221 39 32 chr3 75443552 75444014 -84155769 + Lx5 LINE L1 6583 7047 -3 6 1160 378 146 21 10 chr3 75444320 75444417 -84155366 + (TA)n Simple_repeat Simple_repeat 1 98 0 6 1160 22 80 0 0 chr3 75445251 75445301 -84154482 + AT_rich Low_complexity Low_complexity 1 50 0 6 1160 279 261 69 92 chr3 75445576 75445707 -84154076 - MER5A1 DNA MER1_type 0 166 39 6 1160 21 57 0 0 chr3 75446297 75446332 -84153451 + AT_rich Low_complexity Low_complexity 1 35 0 6 1160 495 0 0 0 chr3 75446473 75446528 -84153255 + (TC)n Simple_repeat Simple_repeat 2 56 0 6 1160 459 0 0 0 chr3 75446528 75446578 -84153205 + (TG)n Simple_repeat Simple_repeat 2 52 0 6 1160 384 369 21 7 chr3 75446597 75446739 -84153044 - RSINE1 SINE B4 -18 147 4 6 1160 233 209 0 0 chr3 75446861 75446904 -84152879 + (CA)n Simple_repeat Simple_repeat 2 44 0 6 1160 219 139 0 0 chr3 75447417 75447453 -84152330 + (A)n Simple_repeat Simple_repeat 1 36 0 6 1160 406 147 120 8 chr3 75447669 75447786 -84151997 + Lx9 LINE L1 7423 7552 -92 6 1160 298 64 0 0 chr3 75447970 75448017 -84151766 + L1_Mus3 LINE L1 6568 6614 -24 6 1160 561 30 0 0 chr3 75448017 75448084 -84151699 + (TA)n Simple_repeat Simple_repeat 1 67 0 6 1160 474 18 0 0 chr3 75448084 75448138 -84151645 + (GA)n Simple_repeat Simple_repeat 2 56 0 6 1160 1626 110 7 57 chr3 75448156 75448436 -84151347 + Lx3B LINE L1 6705 6970 -3 6 1160 195 203 0 0 chr3 75448693 75448752 -84151031 + (TG)n Simple_repeat Simple_repeat 2 60 0 6 1160 662 273 60 25 chr3 75449891 75450090 -84149693 - B3 SINE B2 -2 214 9 6 1160 276 279 35 0 chr3 75450110 75450196 -84149587 - B1F SINE Alu -11 138 50 6 1160 401 260 56 31 chr3 75450431 75450619 -84149164 - LTR40b LTR ERVL 0 519 332 6 1160 1280 187 0 4 chr3 75450619 75450845 -84148938 + URR1B DNA MER1_type 1 225 0 6 1160 391 275 72 77 chr3 75450845 75450865 -84148918 - LTR40b LTR ERVL -188 331 312 6 1160 581 285 79 16 chr3 75450915 75451104 -84148679 + B3 SINE B2 1 201 -15 6 1160 355 92 53 0 chr3 75451107 75451183 -84148600 + (CAGAGA)n Simple_repeat Simple_repeat 4 83 0 6 1160 1837 138 116 27 chr3 75451314 75451649 -84148134 - ORR1B2 LTR MaLR 0 367 3 6 1160 204 40 0 0 chr3 75451862 75451887 -84147896 + (A)n Simple_repeat Simple_repeat 1 25 0 6 1160 7529 136 29 16 chr3 75452300 75453599 -84146184 - Lx2B LINE L1 -10 6990 5676 6 1160 390 42 0 0 chr3 75453712 75453760 -84146023 + (CA)n Simple_repeat Simple_repeat 2 49 0 6 1160 826 109 14 28 chr3 75454165 75454306 -84145477 - RLTR9C LTR ERVK 0 393 255 6 1160 1622 131 119 22 chr3 75454321 75454641 -84145142 - RLTR9E LTR ERVK -58 351 1 6 1160 461 42 26 66 chr3 75454643 75454719 -84145064 - ETnERV2-int LTR ERVK -3 7403 7331 6 1160 1899 182 183 7 chr3 75454719 75455177 -84144606 - RLTR13D6 LTR ERVK -363 539 1 6 1160 1494 151 4 4 chr3 75455184 75455437 -84144346 - ETnERV3-int LTR ERVK -27 5781 5529 6 1160 282 154 0 58 chr3 75455450 75455519 -84144264 - RLTR45-int LTR ERVK -1172 6072 6008 6 1160 1249 171 31 16 chr3 75455613 75455955 -84143828 - ETnERV2-int LTR ERVK -977 6429 6136 6 1160 3948 178 42 39 chr3 75455933 75457628 -84142155 - ETnERV2-int LTR ERVK -3321 4085 2358 6 1160 1637 174 206 29 chr3 75457644 75458120 -84141663 - ETnERV2-int LTR ERVK -4419 2987 2428 6 1160 2895 166 94 106 chr3 75458125 75459423 -84140360 - ETnERV2-int LTR ERVK -5329 2077 2 6 1160 1966 119 99 36 chr3 75459426 75459810 -84139973 - RLTR9E LTR ERVK -1 408 1 6 1160 551 331 63 74 chr3 75460128 75460712 -84139071 - L1MD3 LINE L1 -2013 5982 5405 6 1160 365 289 175 34 chr3 75460748 75460987 -84138796 - L1MD3 LINE L1 -779 5367 5101 6 1160 518 276 82 82 chr3 75460987 75461366 -84138417 - MTE2a LTR MaLR 0 379 1 6 1160 365 289 175 34 chr3 75461366 75461425 -84138358 - L1MD3 LINE L1 -1046 5100 5001 6 1160 351 0 0 0 chr3 75461425 75461464 -84138319 + (TG)n Simple_repeat Simple_repeat 2 40 0 6 1160 393 271 115 24 chr3 75461464 75461719 -84138064 - L1MD3 LINE L1 -1146 5000 4735 6 1160 467 303 109 51 chr3 75462054 75462329 -84137454 - L1MD3 LINE L1 -5119 1123 833 6 1160 225 0 0 0 chr3 75462781 75462806 -84136977 + (TG)n Simple_repeat Simple_repeat 1 25 0 6 1160 264 30 0 0 chr3 75462806 75462838 -84136945 + (GA)n Simple_repeat Simple_repeat 1 33 0 6 1160 277 358 42 0 chr3 75462847 75462942 -84136841 - B1F SINE Alu -48 101 3 6 1160 1937 155 15 6 chr3 75463490 75463814 -84135969 - ORR1A2 LTR MaLR 0 327 1 6 1160 201 39 0 0 chr3 75464123 75464149 -84135634 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 6 1160 726 314 118 55 chr3 75464413 75464777 -84135006 + Kanga1a DNA Tc2 31 417 -337 6 1160 36 50 0 36 chr3 75464884 75464967 -84134816 + AT_rich Low_complexity Low_complexity 1 80 0 6 1160 1056 95 0 39 chr3 75465775 75465928 -84133855 - B1_Mus2 SINE Alu 0 147 1 6 1160 571 240 117 26 chr3 75466052 75466206 -84133577 + B3A SINE B2 1 168 -30 6 1160 234 91 0 0 chr3 75466210 75466243 -84133540 + (CA)n Simple_repeat Simple_repeat 1 33 0 6 1160 3535 20 0 0 chr3 75466627 75467023 -84132760 + MTA_Mm LTR MaLR 1 396 0 6 1160 9101 34 5 1 chr3 75467023 75468117 -84131666 + MTA_Mm-int LTR MaLR 1 1098 0 6 1160 3515 20 0 0 chr3 75468117 75468511 -84131272 + MTA_Mm LTR MaLR 1 394 -2 6 1160 1746 246 18 25 chr3 75469012 75469461 -84130322 + Lx6 LINE L1 7009 7454 -6 6 1160 1714 65 0 4 chr3 75469600 75469830 -84129953 + L1Md_F2 LINE L1 5357 5585 -298 6 1160 7935 56 1 5 chr3 75469831 75470830 -84128953 + L1Md_F2 LINE L1 5587 6581 -1 6 1160 581 118 0 11 chr3 75471153 75471247 -84128536 - L1_Mus1 LINE L1 -750 5133 5041 6 1160 7328 83 3 0 chr3 75471240 75472686 -84127097 + L1_Mus1 LINE L1 5116 6565 -2 6 1160 860 258 19 14 chr3 75474674 75474886 -84124897 + B3 SINE B2 4 216 0 6 1160 201 74 0 0 chr3 75474999 75475026 -84124757 + (TTCTC)n Simple_repeat Simple_repeat 4 30 0 6 1160 628 262 62 17 chr3 75475027 75475205 -84124578 - ID_B1 SINE B4 0 224 44 6 1160 514 218 96 8 chr3 75475773 75475898 -84123885 + B1_Mus1 SINE Alu 1 136 -12 6 1160 1018 265 67 100 chr3 75477148 75477307 -84122476 - MTE2a LTR MaLR -2 377 202 6 1160 189 0 0 0 chr3 75477307 75477328 -84122455 + (GA)n Simple_repeat Simple_repeat 2 22 0 6 1160 1018 265 67 100 chr3 75477328 75477558 -84122225 - MTE2a LTR MaLR -178 201 1 6 1160 206 256 0 0 chr3 75477713 75477756 -84122027 + (CATATA)n Simple_repeat Simple_repeat 3 45 0 6 1160 1618 32 5 0 chr3 75477931 75478121 -84121662 - B2_Mm1t SINE B2 -1 192 2 6 1160 2300 70 0 0 chr3 75478704 75479019 -84120764 - L1_Mus4 LINE L1 -660 5976 5662 6 1160 4207 90 8 10 chr3 75479019 75479613 -84120170 + L1_Mus4 LINE L1 6044 6636 0 6 1160 347 312 180 34 chr3 75479710 75479949 -84119834 + MLT1A0 LTR MaLR 19 292 -73 6 1160 281 271 29 0 chr3 75480783 75480853 -84118930 - MT2A LTR ERVL -74 459 388 6 1160 616 179 9 0 chr3 75480841 75480947 -84118836 + B1_Mur4 SINE Alu 39 145 -5 6 1160 622 209 44 133 chr3 75480956 75481071 -84118712 - Lx3_Mus LINE L1 -16 7680 7565 6 1160 3518 105 14 6 chr3 75481071 75481571 -84118212 + Lx LINE L1 6149 6652 -2 6 1160 1485 209 44 133 chr3 75481571 75481703 -84118080 - Lx3_Mus LINE L1 -132 7564 7343 6 1160 378 0 0 0 chr3 75481703 75481745 -84118038 + (GA)n Simple_repeat Simple_repeat 2 43 0 6 1160 1787 167 20 21 chr3 75481745 75482366 -84117417 - Lx3_Mus LINE L1 -764 6245 5934 6 1160 5658 80 15 14 chr3 75482366 75483144 -84116639 + Lx3_Mus LINE L1 6231 7009 0 6 1160 864 99 14 7 chr3 75483161 75483304 -84116479 + (GAA)n Simple_repeat Simple_repeat 2 145 0 6 1160 653 201 14 7 chr3 75483304 75483449 -84116334 - Lx7 LINE L1 -659 7037 6892 6 1160 4296 220 78 33 chr3 75483449 75484750 -84115033 - RMER12 LTR ERVK 0 1848 1 7 1160 2577 229 98 18 chr3 75484750 75485430 -84114353 - Lx7 LINE L1 -799 6897 6163 6 1160 686 208 8 8 chr3 75485430 75485561 -84114222 + B1_Mur2 SINE Alu 17 147 -2 7 1160 273 326 37 7 chr3 75485986 75486122 -84113661 + B1F1 SINE Alu 5 144 -5 7 1160 246 329 12 0 chr3 75486147 75486229 -84113554 + ID4_ SINE ID 1 83 0 7 1160 318 144 36 0 chr3 75486337 75486403 -84113380 - MTD LTR MaLR -8 411 286 7 1160 654 263 268 7 chr3 75486866 75487142 -84112641 - MTC LTR MaLR 0 421 74 7 1160 260 336 63 57 chr3 75487200 75487358 -84112425 - MLT1L LTR MaLR -408 202 44 7 1160 192 314 62 62 chr3 75487541 75487639 -84112144 - MIRc SINE MIR -39 229 128 7 1160 360 64 0 0 chr3 75487639 75487686 -84112097 + (CAAAC)n Simple_repeat Simple_repeat 2 48 0 7 1160 192 314 62 62 chr3 75487686 75487733 -84112050 - MIRc SINE MIR -141 127 84 7 1160 2595 144 91 0 chr3 75487773 75488203 -84111580 + Lx2 LINE L1 6529 6997 0 7 1160 682 313 35 0 chr3 75488203 75488404 -84111379 + B4A SINE B4 27 234 -58 7 1160 565 246 71 21 chr3 75488402 75488543 -84111240 + B1F2 SINE Alu 2 149 0 7 1160 373 347 83 79 chr3 75488543 75488607 -84111176 + B4 SINE B4 105 292 0 7 1160 219 167 0 0 chr3 75488647 75488689 -84111094 + (CATG)n Simple_repeat Simple_repeat 3 44 0 7 1160 384 324 35 14 chr3 75488774 75488915 -84110868 + MER5A DNA MER1_type 40 183 -6 7 1160 500 341 0 47 chr3 75489942 75490133 -84109650 - MER5A DNA MER1_type -1 188 7 7 1160 778 296 46 61 chr3 75491816 75492070 -84107713 + B4A SINE B4 20 270 -22 7 1160 474 33 0 0 chr3 75492070 75492130 -84107653 + (TG)n Simple_repeat Simple_repeat 1 60 0 7 1160 942 199 45 23 chr3 75492345 75492566 -84107217 + URR1A DNA MER1_type 1 226 0 7 1160 273 57 0 0 chr3 75492901 75492936 -84106847 + (CA)n Simple_repeat Simple_repeat 2 36 0 7 1160 504 45 0 0 chr3 75492951 75493018 -84106765 + (GA)n Simple_repeat Simple_repeat 2 68 0 7 1160 187 176 0 0 chr3 75493303 75493337 -84106446 + L2c LINE L2 3107 3140 -247 7 1160 273 338 0 0 chr3 75493719 75493793 -84105990 - ID4 SINE ID -8 75 2 7 1160 275 96 19 0 chr3 75494227 75494279 -84105504 + (TG)n Simple_repeat Simple_repeat 2 54 0 7 1160 30 0 0 0 chr3 75494765 75494795 -84104988 + AT_rich Low_complexity Low_complexity 1 30 0 7 1160 429 20 0 0 chr3 75494815 75494865 -84104918 + (TG)n Simple_repeat Simple_repeat 1 50 0 7 1160 324 326 129 23 chr3 75494872 75495004 -84104779 - RSINE1 SINE B4 -15 150 5 7 1160 457 264 23 21 chr3 75494995 75495193 -84104590 - B4A SINE B4 -51 241 1 7 1160 364 203 0 14 chr3 75495390 75495460 -84104323 - L2a LINE L2 0 3426 3358 7 1160 301 291 21 62 chr3 75496147 75496341 -84103442 + L1MA8 LINE L1 5968 6153 -138 7 1160 420 20 0 0 chr3 75496602 75496651 -84103132 + (TG)n Simple_repeat Simple_repeat 1 49 0 7 1160 1202 265 96 9 chr3 75496864 75497283 -84102500 + Lx8 LINE L1 6697 7151 -322 7 1161 583 282 6 84 chr3 75498682 75498762 -84101021 - RSINE1 SINE B4 0 165 92 7 1161 2706 176 69 62 chr3 75498762 75499374 -84100409 + RLTR18 LTR ERVK 1 616 0 7 1161 583 282 6 84 chr3 75499374 75499471 -84100312 - RSINE1 SINE B4 -74 91 2 7 1161 436 243 188 27 chr3 75501125 75501311 -84098472 + B3 SINE B2 1 216 0 1 1161 245 29 0 29 chr3 75501437 75501472 -84098311 + (TTA)n Simple_repeat Simple_repeat 3 36 0 2 1161 646 299 0 57 chr3 75501524 75501701 -84098082 - B4A SINE B4 -2 290 124 3 1161 650 293 6 44 chr3 75501948 75502130 -84097653 - B3A SINE B2 -23 175 1 4 1161 569 133 10 0 chr3 75503629 75503727 -84096056 + (TG)n Simple_repeat Simple_repeat 2 100 0 5 1161 287 276 13 38 chr3 75503727 75503806 -84095977 - B4A SINE B4 -213 79 3 3 1161 390 289 65 29 chr3 75504130 75504159 -84095624 + ID_B1 SINE B4 50 193 -31 6 1161 556 218 36 0 chr3 75504159 75504269 -84095514 + B1_Mus1 SINE Alu 1 114 -34 7 1161 223 297 0 15 chr3 75504361 75504426 -84095357 + CT-rich Low_complexity Low_complexity 2 65 0 8 1161 274 218 49 49 chr3 75504480 75504562 -84095221 - MER34A LTR ERV1 -489 82 1 9 1161 26 50 0 0 chr3 75505007 75505047 -84094736 + AT_rich Low_complexity Low_complexity 1 40 0 1 1161 1250 121 64 102 chr3 75505943 75506209 -84093574 + ORR1A2 LTR MaLR 1 256 -71 1 1161 21 36 0 0 chr3 75506547 75506575 -84093208 + AT_rich Low_complexity Low_complexity 1 28 0 1 1161 3676 142 45 14 chr3 75507749 75508465 -84091318 + L1_Mur2 LINE L1 3120 3857 -2020 1 1161 604 198 35 18 chr3 75508468 75508638 -84091145 + Lx4B LINE L1 6865 7037 -21 1 1161 1147 95 6 11 chr3 75508638 75508819 -84090964 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 1 1161 1239 36 12 6 chr3 75510844 75511010 -84088773 + (TCTCCC)n Simple_repeat Simple_repeat 2 168 0 1 1161 23 0 0 0 chr3 75511157 75511180 -84088603 + AT_rich Low_complexity Low_complexity 1 23 0 1 1161 248 328 44 15 chr3 75511187 75511255 -84088528 + ID4 SINE ID 1 70 -13 1 1161 6031 192 38 17 chr3 75511357 75512691 -84087092 - Lx2B LINE L1 -2 6998 5638 1 1161 1119 244 27 33 chr3 75512893 75513229 -84086554 - RLTR18B LTR ERVK -62 554 135 2 1161 642 256 56 60 chr3 75513204 75513470 -84086313 - RLTR18B LTR ERVK -309 307 1 2 1161 665 303 17 34 chr3 75513560 75513796 -84085987 + RLTR17 LTR ERVK 125 356 -336 2 1161 643 299 33 47 chr3 75513855 75514066 -84085717 + RLTR31_Mur LTR ERVK 346 553 0 2 1161 520 62 12 12 chr3 75514303 75514385 -84085398 + (CA)n Simple_repeat Simple_repeat 1 82 0 2 1161 453 274 95 29 chr3 75515394 75515832 -84083951 - L1_Mur3 LINE L1 -522 5634 5169 2 1161 351 0 0 0 chr3 75515895 75515934 -84083849 + (TC)n Simple_repeat Simple_repeat 2 40 0 2 1161 205 167 48 0 chr3 75515934 75515976 -84083807 + CT-rich Low_complexity Low_complexity 4 47 0 2 1161 278 325 56 28 chr3 75516084 75516334 -84083449 - L1M5 LINE L1 -1133 5013 4757 2 1161 22 0 0 0 chr3 75516515 75516537 -84083246 + AT_rich Low_complexity Low_complexity 1 22 0 2 1161 536 77 13 0 chr3 75516624 75516702 -84083081 + (TTTC)n Simple_repeat Simple_repeat 2 80 0 2 1161 189 321 48 24 chr3 75517751 75517834 -84081949 - MIR SINE MIR -154 108 24 3 1161 224 30 0 29 chr3 75518215 75518249 -84081534 + (GAAA)n Simple_repeat Simple_repeat 4 36 0 3 1161 374 311 0 36 chr3 75518405 75518515 -84081268 - U6 snRNA snRNA -1 106 1 3 1161 277 56 0 0 chr3 75518868 75518904 -84080879 + RLTR10B LTR ERVK 1 36 -256 3 1161 2047 49 0 93 chr3 75518904 75519217 -84080566 + RLTR10B LTR ERVK 9 292 0 3 1161 21260 83 14 0 chr3 75519465 75522415 -84077368 + MERVL-int LTR ERVL 2365 5356 -129 3 1161 301 164 90 0 chr3 75522532 75522599 -84077184 + ORR1A3-int LTR MaLR 568 640 -1323 3 1161 264 53 0 0 chr3 75522599 75522637 -84077146 + MERVL-int LTR ERVL 5448 5485 0 3 1161 3229 90 19 31 chr3 75522637 75523118 -84076665 + MT2C_Mm LTR ERVL 1 475 0 3 1161 1670 200 104 91 chr3 75523300 75523918 -84075865 + RMER1B Other Other 212 1052 -14 3 1161 489 329 31 68 chr3 75524099 75524262 -84075521 + RSINE1 SINE B4 8 164 -1 3 1161 301 238 43 106 chr3 75524814 75524908 -84074875 - B1_Mur3 SINE Alu -44 105 18 3 1161 205 356 72 46 chr3 75525472 75525507 -84074276 + L2 LINE L2 2762 2801 -618 3 1161 1393 216 43 17 chr3 75525507 75525856 -84073927 - ORR1E LTR MaLR 0 359 2 4 1161 205 356 72 46 chr3 75525856 75525973 -84073810 + L2 LINE L2 2802 2918 -501 3 1161 247 165 88 49 chr3 75527243 75527345 -84072438 + Lx9 LINE L1 7410 7515 -129 4 1161 336 220 186 12 chr3 75527888 75528049 -84071734 - L1ME2z LINE L1 -11 6433 6245 4 1161 15441 77 282 15 chr3 75528933 75533846 -84065937 - L1Md_F3 LINE L1 -2 6582 232 4 1161 29 0 0 0 chr3 75533855 75533884 -84065899 + AT_rich Low_complexity Low_complexity 1 29 0 4 1161 461 50 58 19 chr3 75534166 75534269 -84065514 + (CAAA)n Simple_repeat Simple_repeat 2 108 0 4 1161 407 240 96 80 chr3 75534430 75534629 -84065154 - Lx8 LINE L1 -1 7472 7271 4 1161 2198 258 36 100 chr3 75534761 75535722 -84064061 - RMER1C Other Other -19 1323 424 4 1161 1950 80 6 94 chr3 75535801 75536162 -84063621 - Lx3_Mus LINE L1 -898 6111 5783 4 1161 3928 72 6 13 chr3 75536163 75536695 -84063088 - L1Md_F2 LINE L1 -12 6570 6043 4 1161 2050 218 61 26 chr3 75536695 75537018 -84062765 - Lx7 LINE L1 -904 6792 6451 5 1161 2039 125 168 21 chr3 75537018 75537393 -84062390 - RLTR23 LTR ERV1 0 430 1 5 1161 2050 218 61 26 chr3 75537393 75537577 -84062206 - Lx7 LINE L1 -1246 6450 6267 5 1161 375 229 178 0 chr3 75537574 75537692 -84062091 + Lx7 LINE L1 6124 6262 -1434 5 1161 756 308 32 61 chr3 75538389 75539150 -84060633 + L1_Mur3 LINE L1 2147 2850 -3030 5 1161 3348 256 45 29 chr3 75539322 75540253 -84059530 + RMER1C Other Other 394 1339 -3 5 1161 561 281 141 54 chr3 75540272 75540569 -84059214 + L1_Mur3 LINE L1 2953 3275 -2868 5 1161 903 332 38 24 chr3 75540684 75540707 -84059076 - B4A SINE B4 0 292 271 5 1161 387 0 0 0 chr3 75540707 75540750 -84059033 + (TC)n Simple_repeat Simple_repeat 2 44 0 5 1161 339 25 0 0 chr3 75540750 75540789 -84058994 + (TG)n Simple_repeat Simple_repeat 1 40 0 5 1161 903 332 38 24 chr3 75540789 75541051 -84058732 - B4A SINE B4 -22 270 3 5 1161 229 185 37 0 chr3 75541260 75541314 -84058469 + (TA)n Simple_repeat Simple_repeat 1 56 0 5 1161 6300 74 2 1 chr3 75543166 75544489 -84055294 + L1Md_F2 LINE L1 392 1715 -4168 5 1161 5956 70 1 0 chr3 75544491 75545300 -84054483 + L1Md_F2 LINE L1 4777 5586 -297 5 1161 8185 48 1 0 chr3 75545301 75546295 -84053488 + L1Md_F2 LINE L1 5588 6582 0 5 1161 1125 141 11 11 chr3 75546310 75546497 -84053286 + B2_Mm2 SINE B2 8 194 -1 5 1161 245 271 21 0 chr3 75546545 75546593 -84053190 - PB1 SINE Alu -77 50 2 6 1161 326 348 21 97 chr3 75546767 75547098 -84052685 + Lx8 LINE L1 7159 7464 -9 6 1161 1438 134 25 25 chr3 75547114 75547398 -84052385 - Lx2 LINE L1 -1 6996 6713 6 1161 3617 204 36 1 chr3 75547824 75548713 -84051070 + Lx7 LINE L1 505 1429 -4451 6 1161 446 302 18 31 chr3 75548716 75548895 -84050888 - RMER1C Other Other -461 881 564 6 1161 266 309 0 0 chr3 75548945 75549026 -84050757 - RMER1C Other Other -1213 129 49 6 1161 708 287 40 24 chr3 75549204 75549454 -84050329 - RMER1C Other Other -1057 285 32 6 1161 3266 228 63 8 chr3 75550295 75550602 -84049181 + Lx7 LINE L1 4932 5245 -635 6 1161 330 26 0 0 chr3 75550602 75550641 -84049142 + (CAA)n Simple_repeat Simple_repeat 2 40 0 6 1161 3266 230 62 9 chr3 75550641 75551356 -84048427 + Lx7 LINE L1 5246 6009 -1687 6 1161 954 207 36 64 chr3 75551395 75551725 -84048058 + Lx7 LINE L1 7376 7696 0 6 1161 269 57 0 0 chr3 75553920 75553955 -84045828 + U2 snRNA snRNA 1 35 -153 6 1161 373 211 0 0 chr3 75554331 75554426 -84045357 + Lx4A LINE L1 6964 7058 0 6 1161 23 0 0 0 chr3 75554429 75554452 -84045331 + AT_rich Low_complexity Low_complexity 1 23 0 6 1161 357 24 0 0 chr3 75554557 75554599 -84045184 + (TC)n Simple_repeat Simple_repeat 2 43 0 7 1161 211 196 0 0 chr3 75554599 75554645 -84045138 + (TG)n Simple_repeat Simple_repeat 2 47 0 7 1161 756 61 0 0 chr3 75554651 75554749 -84045034 + (TA)n Simple_repeat Simple_repeat 2 99 0 7 1161 3960 29 0 26 chr3 75555606 75556101 -84043682 - L1Md_F2 LINE L1 0 6582 6101 7 1161 1110 260 94 3 chr3 75556309 75556648 -84043135 - ORR1D2 LTR MaLR 0 370 1 7 1161 189 250 38 19 chr3 75556749 75556802 -84042981 + MIRb SINE MIR 215 268 0 7 1161 471 336 0 0 chr3 75556819 75556935 -84042848 + RSINE1 SINE B4 3 118 -47 7 1161 279 0 0 0 chr3 75556959 75556990 -84042793 + (CA)n Simple_repeat Simple_repeat 2 32 0 7 1161 266 295 13 0 chr3 75557804 75557882 -84041901 + ID2 SINE ID 5 83 0 7 1161 564 106 0 0 chr3 75557972 75558066 -84041717 + (CA)n Simple_repeat Simple_repeat 2 95 0 7 1161 23 0 0 0 chr3 75558419 75558442 -84041341 + AT_rich Low_complexity Low_complexity 1 23 0 8 1161 225 311 54 45 chr3 75559814 75559925 -84039858 + L2c LINE L2 3260 3371 -16 8 1161 389 327 10 19 chr3 75560406 75560509 -84039274 - B3A SINE B2 -69 129 28 8 1161 207 163 20 20 chr3 75560970 75561020 -84038763 + (TA)n Simple_repeat Simple_repeat 1 50 0 8 1161 279 0 0 0 chr3 75561358 75561389 -84038394 + (TG)n Simple_repeat Simple_repeat 2 32 0 8 1161 876 188 332 22 chr3 75561395 75561672 -84038111 - ORR1D1 LTR MaLR -15 363 1 8 1161 620 54 0 21 chr3 75561829 75561923 -84037860 + (TCTA)n Simple_repeat Simple_repeat 4 95 0 8 1161 32 43 0 0 chr3 75562083 75562129 -84037654 + AT_rich Low_complexity Low_complexity 1 46 0 8 1161 468 303 65 84 chr3 75562138 75562489 -84037294 - MLT2B2 LTR ERVL -10 552 118 8 1161 533 358 21 21 chr3 75562507 75562741 -84037042 + MLT2B2 LTR ERVL 10 243 -272 8 1161 647 127 45 0 chr3 75562871 75563005 -84036778 - Lx LINE L1 -7 6647 6508 9 1161 238 234 29 47 chr3 75563241 75563411 -84036372 + (TTATA)n Simple_repeat Simple_repeat 2 168 0 9 1161 266 177 70 17 chr3 75563248 75563363 -84036420 + (TA)n Simple_repeat Simple_repeat 2 122 0 9 1161 6015 135 72 0 chr3 75563545 75564517 -84035266 - Lx2 LINE L1 0 6997 5956 9 1161 5801 111 43 7 chr3 75564519 75565407 -84034376 - Lx LINE L1 -6 6648 5729 9 1161 282 116 0 0 chr3 75565909 75565952 -84033831 + (TG)n Simple_repeat Simple_repeat 1 43 0 9 1161 1050 276 69 16 chr3 75566038 75566417 -84033366 + Lx6 LINE L1 7036 7434 -26 9 1161 1171 192 23 0 chr3 75567912 75568131 -84031652 - URR1B DNA MER1_type -1 224 1 9 1161 456 77 0 0 chr3 75569284 75569349 -84030434 + (TG)n Simple_repeat Simple_repeat 2 66 0 9 1161 268 322 0 0 chr3 75569352 75569411 -84030372 - ID4 SINE ID -13 70 12 9 1161 475 211 12 0 chr3 75569467 75569628 -84030155 + (TA)n Simple_repeat Simple_repeat 2 164 0 1 1161 272 243 27 0 chr3 75569644 75569718 -84030065 + (TA)n Simple_repeat Simple_repeat 2 77 0 1 1161 824 259 14 5 chr3 75570800 75571013 -84028770 + B3 SINE B2 2 216 0 1 1161 483 233 250 0 chr3 75572191 75572371 -84027412 + URR1B DNA MER1_type 1 225 0 1 1161 453 383 15 66 chr3 75572510 75572819 -84026964 - B4A SINE B4 0 292 1 1 1161 3380 189 56 16 chr3 75572996 75573745 -84026038 - Lx5 LINE L1 -627 6423 5645 1 1161 7433 91 18 26 chr3 75573745 75574110 -84025673 + L1_Mus4 LINE L1 5427 5807 -829 1 1161 4478 53 0 7 chr3 75574110 75574666 -84025117 - L1Md_F2 LINE L1 -12 6570 6019 1 1161 7433 74 7 18 chr3 75574666 75575453 -84024330 + L1_Mus4 LINE L1 5808 6582 -54 1 1161 284 141 121 30 chr3 75575453 75575519 -84024264 + RLTR25B LTR ERVK 438 509 -519 1 1161 683 52 21 0 chr3 75575462 75575550 -84024233 + B1_Mus2 SINE Alu 47 136 -11 1 1161 371 0 61 0 chr3 75575550 75575599 -84024184 + (CAAAA)n Simple_repeat Simple_repeat 2 53 0 1 1161 2634 202 49 2 chr3 75575640 75576190 -84023593 - Lx5 LINE L1 -229 5648 5073 1 1161 804 132 0 0 chr3 75576865 75576994 -84022789 + (TA)n Simple_repeat Simple_repeat 1 129 0 1 1161 664 316 73 30 chr3 75577461 75577804 -84021979 + MTD LTR MaLR 18 405 -14 1 1161 180 0 0 0 chr3 75578125 75578145 -84021638 + (CA)n Simple_repeat Simple_repeat 2 21 0 1 1161 296 237 67 8 chr3 75579370 75579489 -84020294 + Lx6 LINE L1 7309 7434 -26 1 1161 195 139 0 0 chr3 75579909 75579945 -84019838 + (TG)n Simple_repeat Simple_repeat 2 37 0 1 1161 280 299 176 10 chr3 75580403 75580602 -84019181 - L1_Mur1 LINE L1 -4112 1774 1543 1 1161 303 288 122 74 chr3 75580675 75580986 -84018797 - L1M4c LINE L1 -5174 1210 885 1 1161 497 294 75 16 chr3 75581006 75581193 -84018590 - B3 SINE B2 -18 198 1 1 1161 204 164 29 15 chr3 75582615 75582683 -84017100 + (TAGA)n Simple_repeat Simple_repeat 2 70 0 1 1161 38501 5 0 0 chr3 75583572 75588930 -84010853 + L1Md_A LINE L1 228 5586 -297 1 1161 9016 3 0 0 chr3 75588930 75589926 -84009857 + L1Md_A LINE L1 5587 6582 0 1 1161 252 0 0 0 chr3 75591769 75591797 -84007986 + (ATTG)n Simple_repeat Simple_repeat 1 28 0 1 1161 1415 238 48 27 chr3 75592700 75593075 -84006708 - RMER19C LTR ERVK -2 609 227 1 1161 949 224 66 33 chr3 75593182 75593514 -84006269 - RLTR15 LTR ERVK -16 343 1 1 1161 1305 248 72 80 chr3 75593720 75593913 -84005870 + ORR1D2 LTR MaLR 1 184 -186 1 1161 2035 109 47 3 chr3 75593913 75594234 -84005549 - Lx LINE L1 -10 6644 6310 1 1161 1305 248 72 80 chr3 75594234 75594413 -84005370 + ORR1D2 LTR MaLR 185 370 0 1 1161 243 0 0 0 chr3 75594717 75594744 -84005039 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 1161 878 147 7 0 chr3 75594744 75594880 -84004903 - B1_Mus1 SINE Alu -10 138 2 1 1161 271 241 39 56 chr3 75595179 75595359 -84004424 + (TATATG)n Simple_repeat Simple_repeat 3 179 0 1 1161 6969 68 23 6 chr3 75595528 75596445 -84003338 - L1Md_F2 LINE L1 -12 6570 5638 1 1161 29466 77 3 8 chr3 75596431 75600976 -83998807 - L1Md_F2 LINE L1 -712 5171 654 1 1161 342 279 23 0 chr3 75600995 75601081 -83998702 - B4A SINE B4 -201 91 4 1 1161 1354 127 39 9 chr3 75601246 75601476 -83998307 + Lx LINE L1 6412 6648 -6 1 1161 351 0 0 0 chr3 75601833 75601872 -83997911 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 1161 708 201 13 32 chr3 75602380 75602569 -83997214 - L1_Mur3 LINE L1 -3661 2479 2289 1 1161 743 261 0 30 chr3 75602570 75602771 -83997012 - Lx6 LINE L1 -26 7434 7240 1 1161 539 332 64 13 chr3 75602764 75603108 -83996675 - Lx6 LINE L1 -1007 6689 6070 1 1161 693 110 0 52 chr3 75603111 75603245 -83996538 - L1Md_F2 LINE L1 0 6582 6456 1 1161 507 57 0 0 chr3 75603246 75603316 -83996467 + MusHAL1 LINE L1 1887 1956 -756 1 1161 746 191 19 19 chr3 75603347 75603502 -83996281 - L1_Mur3 LINE L1 -3576 2304 2150 1 1161 473 221 39 0 chr3 75603507 75603611 -83996172 - RMER1C Other Other -4 1338 1231 1 1161 186 43 0 0 chr3 75603698 75603721 -83996062 + (TCC)n Simple_repeat Simple_repeat 3 25 0 1 1161 340 322 102 63 chr3 75604565 75604948 -83994835 - MLT2D LTR ERVL 0 414 1 1 1161 207 0 0 0 chr3 75605751 75605774 -83994009 + (TA)n Simple_repeat Simple_repeat 1 23 0 1 1161 2220 223 33 53 chr3 75605806 75606520 -83993263 + Lx6 LINE L1 5413 6138 -1322 1 1161 1250 40 0 0 chr3 75606520 75606668 -83993115 + B1_Mus1 SINE Alu 1 148 0 1 1161 1900 248 56 87 chr3 75606668 75606817 -83992966 + Lx6 LINE L1 6139 6258 -1202 1 1161 870 282 98 21 chr3 75606814 75607261 -83992522 - Lx5 LINE L1 -36 7014 6478 1 1161 1106 233 43 36 chr3 75607331 75607607 -83992176 - RMER20B LTR ERVK -14 613 336 1 1161 180 0 0 0 chr3 75608004 75608024 -83991759 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1 1161 2665 174 105 10 chr3 75608143 75608319 -83991464 + L1_Mur3 LINE L1 3703 3908 -1972 1 1161 1061 58 0 19 chr3 75608319 75608477 -83991306 + L1Md_F2 LINE L1 6424 6578 -4 1 1161 2665 174 105 10 chr3 75608477 75608911 -83990872 + L1_Mur3 LINE L1 3909 4371 -1509 1 1161 2482 96 66 64 chr3 75609335 75609758 -83990025 + L1_Mus2 LINE L1 6143 6566 0 1 1161 6299 195 24 41 chr3 75609761 75611224 -83988559 + L1_Mur3 LINE L1 4440 5877 -3 1 1161 834 208 29 129 chr3 75611271 75611485 -83988298 + Lx7 LINE L1 7387 7573 -123 1 1161 1004 51 72 7 chr3 75611485 75611623 -83988160 - B1_Mus2 SINE Alu 0 147 1 1 1161 834 208 29 129 chr3 75611623 75611750 -83988033 + Lx7 LINE L1 7574 7694 -2 1 1161 25 31 0 0 chr3 75612426 75612458 -83987325 + AT_rich Low_complexity Low_complexity 1 32 0 1 1161 5138 39 0 0 chr3 75612488 75613099 -83986684 - L1Md_T LINE L1 0 6582 5972 1 1161 348 277 62 108 chr3 75614162 75614725 -83985058 + L1M2 LINE L1 2150 2686 -3457 1 1161 377 245 160 6 chr3 75614839 75614995 -83984788 + L1M2 LINE L1 4261 4440 -1703 1 1161 575 356 10 5 chr3 75615122 75615317 -83984466 - ID_B1 SINE B4 -28 196 1 1 1161 266 281 101 0 chr3 75615853 75615992 -83983791 + L1M2 LINE L1 4658 4810 -1333 1 1161 383 227 126 15 chr3 75616037 75616455 -83983328 + L1M2 LINE L1 5013 5496 -816 1 1161 654 237 7 7 chr3 75616636 75616772 -83983011 - B1_Mus1 SINE Alu -8 140 5 1 1161 229 350 10 30 chr3 75616877 75616977 -83982806 - MIRm SINE MIR -21 255 158 1 1161 344 230 77 31 chr3 75617384 75617514 -83982269 - Lx7 LINE L1 0 7696 7561 1 1161 1439 207 33 35 chr3 75617809 75618394 -83981389 + L1_Mur2 LINE L1 817 1322 -5764 1 1161 3817 107 3 8 chr3 75618394 75618987 -83980796 + MMVL30-int LTR ERV1 864 1453 -2245 1 1161 387 173 86 71 chr3 75619052 75619304 -83980479 + MMVL30-int LTR ERV1 960 1184 -2115 1 1161 4906 95 31 16 chr3 75619565 75620348 -83979435 + MMVL30-int LTR ERV1 1501 2231 -1467 1 1161 625 74 5 47 chr3 75620446 75620558 -83979225 + RLTR1B-int LTR ERV1 3221 3299 0 1 1161 3947 51 24 2 chr3 75620558 75621050 -83978733 + RLTR1C LTR ERV1 1 503 0 1 1161 5659 202 212 51 chr3 75621050 75622935 -83976848 + L1_Mur2 LINE L1 2895 5141 -739 1 1161 275 123 105 0 chr3 75622935 75622992 -83976791 + B1_Mus2 SINE Alu 85 147 0 1 1161 5659 202 212 51 chr3 75622992 75623186 -83976597 + L1_Mur2 LINE L1 5142 5374 -506 1 1161 377 390 64 6 chr3 75624363 75624536 -83975247 - MTB_Mm LTR MaLR -44 363 181 1 1161 648 59 29 0 chr3 75624536 75624638 -83975145 + (TTTC)n Simple_repeat Simple_repeat 3 107 0 1 1161 1132 76 7 0 chr3 75624638 75624783 -83975000 - B1_Mm SINE Alu 0 147 2 1 1161 329 366 13 13 chr3 75625072 75625227 -83974556 + RSINE1 SINE B4 5 159 -6 1 1161 360 302 95 5 chr3 75625289 75625450 -83974333 + B3 SINE B2 7 197 -19 1 1161 1520 227 134 14 chr3 75625450 75625884 -83973899 - RMER19C LTR ERVK 0 611 126 1 1161 733 239 0 7 chr3 75627524 75627667 -83972116 + B4 SINE B4 18 159 -133 1 145 230 343 51 40 chr3 75628370 75628546 -83971237 + L2 LINE L2 2225 2402 -1017 1 1162 604 234 7 7 chr3 75628551 75628697 -83971086 - Lx6 LINE L1 -6 7454 7309 1 1162 712 281 33 171 chr3 75628874 75629044 -83970739 + Lx7 LINE L1 6339 6460 -1236 1 1162 330 26 0 0 chr3 75629044 75629083 -83970700 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 1 1162 712 281 33 171 chr3 75629083 75629338 -83970445 + Lx7 LINE L1 6461 6705 -991 1 1162 744 102 19 0 chr3 75629339 75629447 -83970336 + B1_Mus1 SINE Alu 37 146 -2 1 1162 1388 253 107 58 chr3 75629452 75629968 -83969815 + Lx7 LINE L1 6768 7308 -388 1 1162 195 175 0 0 chr3 75629989 75630046 -83969737 + T-rich Low_complexity Low_complexity 3 59 0 1 1162 289 364 9 18 chr3 75630658 75630770 -83969013 + B4A SINE B4 182 292 0 1 1162 218 306 97 0 chr3 75630980 75631052 -83968731 + B4A SINE B4 2 80 -212 1 1162 3263 213 53 5 chr3 75631289 75632055 -83967728 - Lx2B LINE L1 -1 6999 6197 1 1162 407 338 42 0 chr3 75632239 75632381 -83967402 + MER63A DNA AcHobo 14 161 -49 1 1162 198 0 0 0 chr3 75633184 75633206 -83966577 + (TG)n Simple_repeat Simple_repeat 2 23 0 1 1162 327 173 0 0 chr3 75633244 75633325 -83966458 + GA-rich Low_complexity Low_complexity 1 81 0 1 1162 1297 188 71 55 chr3 75634033 75634399 -83965384 - Lx4B LINE L1 -5 7053 6682 1 1162 607 161 0 17 chr3 75634466 75634586 -83965197 + MusHAL1 LINE L1 958 1075 -1637 1 1162 1541 137 33 4 chr3 75634586 75634857 -83964926 + IAPLTR2_Mm LTR ERVK 1 279 -196 1 1162 509 142 121 57 chr3 75634895 75635118 -83964665 + IAPLTR2b LTR ERVK 213 475 0 1 1162 3812 124 17 1 chr3 75635118 75635766 -83964017 + MusHAL1 LINE L1 1070 1727 -985 1 1162 3041 169 0 74 chr3 75635765 75636442 -83963341 + Lx2A1 LINE L1 4498 5124 -762 1 1162 8456 122 39 0 chr3 75636448 75637925 -83961858 + Lx2A1 LINE L1 5461 7000 -8 1 1162 382 325 106 10 chr3 75637931 75638223 -83961560 + L1MD2 LINE L1 5883 6202 -157 1 1162 504 286 148 38 chr3 75638432 75638668 -83961115 + Lx8 LINE L1 7047 7308 -165 1 1162 229 254 35 35 chr3 75640695 75640740 -83959043 + ID4_ SINE ID 15 59 -24 1 1162 330 26 0 0 chr3 75640740 75640779 -83959004 + (CA)n Simple_repeat Simple_repeat 1 39 0 1 1162 229 254 35 35 chr3 75640779 75640790 -83958993 + ID4_ SINE ID 60 71 -12 1 1162 361 345 17 0 chr3 75641673 75641789 -83957994 - ID_B1 SINE B4 -4 220 103 1 1162 614 155 0 8 chr3 75642397 75642514 -83957269 + CT-rich Low_complexity Low_complexity 2 117 0 1 1162 889 265 133 25 chr3 75642717 75643160 -83956623 - RLTR16 LTR ERVK -14 491 1 1 1162 835 260 35 0 chr3 75643528 75643728 -83956055 - B3 SINE B2 -6 210 4 1 1162 1212 106 0 0 chr3 75644953 75645132 -83954651 + (TG)n Simple_repeat Simple_repeat 1 179 0 1 1162 38092 25 0 6 chr3 75645371 75651380 -83948403 - L1Md_A LINE L1 0 6582 618 1 1162 486 0 0 0 chr3 75651875 75651929 -83947854 + (GA)n Simple_repeat Simple_repeat 1 54 0 1 1162 844 38 0 0 chr3 75652754 75652789 -83946994 - B1_Mus2 SINE Alu 0 147 43 1 1162 362 207 0 94 chr3 75652789 75652859 -83946924 - MT2B LTR ERVL -337 264 200 1 1162 4895 50 2 3 chr3 75652859 75653466 -83946317 + L1Md_F2 LINE L1 5977 6582 0 1 1162 362 207 0 94 chr3 75653466 75653491 -83946292 - MT2B LTR ERVL -402 199 178 1 1162 246 296 26 19 chr3 75654678 75654777 -83945006 + MIRc SINE MIR 80 177 -99 2 1162 4143 69 49 3 chr3 75655093 75655166 -83944617 - L1Md_F2 LINE L1 -2 6580 6505 2 1162 183 80 0 0 chr3 75655166 75655191 -83944592 + (CCCA)n Simple_repeat Simple_repeat 1 25 0 2 1162 4143 69 49 3 chr3 75655191 75655684 -83944099 - L1Md_F2 LINE L1 -78 6504 5989 2 1162 9258 60 0 1 chr3 75655684 75657159 -83942624 - L1Md_F2 LINE L1 -458 6124 4651 2 1162 265 331 101 42 chr3 75657208 75657495 -83942288 - LTR82B Low_complexity ERVL -514 316 13 2 1162 244 235 34 21 chr3 75657746 75657845 -83941938 - ORR1E LTR MaLR 0 421 289 2 1162 444 123 0 0 chr3 75658050 75658123 -83941660 + (TG)n Simple_repeat Simple_repeat 1 73 0 2 1162 225 0 0 0 chr3 75658174 75658199 -83941584 + (TA)n Simple_repeat Simple_repeat 1 25 0 2 1162 1321 219 142 3 chr3 75658311 75658485 -83941298 - ORR1C2 LTR MaLR 0 384 173 2 1162 816 11 0 0 chr3 75658485 75658578 -83941205 + (GA)n Simple_repeat Simple_repeat 2 94 0 2 1162 1321 219 142 3 chr3 75658578 75658733 -83941050 - ORR1C2 LTR MaLR -212 172 10 2 1162 369 0 0 0 chr3 75658735 75658776 -83941007 + (TTA)n Simple_repeat Simple_repeat 3 43 0 2 1162 5497 87 25 6 chr3 75658776 75659560 -83940223 - L1_Mus3 LINE L1 -12 6626 5828 2 1162 1295 312 56 27 chr3 75659627 75660361 -83939422 + L1MA7 LINE L1 5492 6246 -45 2 1162 22 80 0 0 chr3 75660399 75660449 -83939334 + AT_rich Low_complexity Low_complexity 1 50 0 2 1162 1117 104 162 17 chr3 75660950 75661185 -83938598 - Lx3B LINE L1 -887 6086 5818 2 1162 5774 130 2 14 chr3 75661185 75662088 -83937695 + Lx3B LINE L1 6082 6973 0 2 1162 1077 303 62 26 chr3 75663594 75664062 -83935721 - RMER5 LTR ERV1 -17 517 33 2 1162 338 295 99 15 chr3 75664104 75664235 -83935548 + ORR1D2 LTR MaLR 34 175 -195 2 1162 283 320 40 16 chr3 75664251 75664375 -83935408 + ORR1D2 LTR MaLR 253 379 0 2 1162 257 257 14 28 chr3 75665445 75665517 -83934266 - B1F SINE Alu 0 149 79 2 1162 715 259 47 0 chr3 75665694 75665887 -83933896 + B3 SINE B2 13 214 -2 2 1162 357 82 0 0 chr3 75666139 75666188 -83933595 + (CGA)n Simple_repeat Simple_repeat 2 50 0 2 1162 279 0 0 0 chr3 75666212 75666243 -83933540 + (CA)n Simple_repeat Simple_repeat 2 32 0 2 1162 1376 180 210 9 chr3 75666274 75666622 -83933161 - Lx LINE L1 0 6654 6237 2 1162 814 124 124 0 chr3 75666590 75666727 -83933056 + Lx LINE L1 6078 6231 -423 2 1162 388 275 96 30 chr3 75666949 75667180 -83932603 - L1MA4A LINE L1 -372 5931 5642 2 1162 652 249 182 50 chr3 75667637 75667984 -83931799 - L1MA4A LINE L1 -602 5689 5258 2 1162 378 0 0 0 chr3 75667984 75668026 -83931757 + (TG)n Simple_repeat Simple_repeat 2 43 0 2 1162 640 267 223 23 chr3 75668026 75668136 -83931647 - L1MA4A LINE L1 -1000 5291 5122 2 1162 21 0 0 0 chr3 75668655 75668676 -83931107 + AT_rich Low_complexity Low_complexity 1 21 0 2 1162 351 252 104 0 chr3 75668824 75668939 -83930844 + MLT1C LTR MaLR 6 132 -335 2 1162 244 312 78 26 chr3 75669020 75669135 -83930648 + MLT1C LTR MaLR 340 460 -7 2 1162 378 0 0 0 chr3 75669716 75669758 -83930025 + (CA)n Simple_repeat Simple_repeat 2 43 0 2 1162 28 48 0 0 chr3 75669938 75669980 -83929803 + AT_rich Low_complexity Low_complexity 1 42 0 2 1162 22 0 0 0 chr3 75670700 75670722 -83929061 + AT_rich Low_complexity Low_complexity 1 22 0 2 1162 913 222 36 21 chr3 75670777 75670970 -83928813 + B3 SINE B2 2 197 -19 2 1162 1035 130 53 26 chr3 75670981 75671171 -83928612 - L1_Mus4 LINE L1 0 6636 6442 2 1162 1023 150 75 20 chr3 75671721 75672049 -83927734 + RLTR9D LTR ERVK 1 390 -13 2 1162 306 171 0 114 chr3 75672757 75672836 -83926947 - Lx7 LINE L1 -4 7692 7623 2 1162 4751 102 31 5 chr3 75673293 75673965 -83925818 + L1_Mus4 LINE L1 5750 6439 -197 2 1162 1893 123 11 0 chr3 75673950 75674227 -83925556 - Lx3C LINE L1 -1105 5871 5592 2 1162 5519 161 38 13 chr3 75674227 75675195 -83924588 + Lx3C LINE L1 5985 6976 0 2 1162 485 306 62 45 chr3 75675195 75675241 -83924542 - L1ME5 LINE L1 -574 5620 5572 2 1162 375 320 46 34 chr3 75675538 75675713 -83924070 + LTR82B Low_complexity ERVL 9 185 -645 2 1162 444 319 179 39 chr3 75676377 75676762 -83923021 - MLT1F1 LTR MaLR -130 439 1 2 1162 998 335 0 56 chr3 75676831 75677135 -83922648 + B4 SINE B4 2 288 -4 2 1162 247 277 11 57 chr3 75677237 75677325 -83922458 + PB1D10 SINE Alu 29 112 -5 2 1162 229 196 210 59 chr3 75678358 75678477 -83921306 - LTR40a LTR ERVL -380 139 3 2 1162 2509 128 5 76 chr3 75679227 75679650 -83920133 - ORR1B1 LTR MaLR 0 394 2 2 1162 204 40 0 0 chr3 75679962 75679987 -83919796 + (TGGG)n Simple_repeat Simple_repeat 1 25 0 2 1162 352 97 32 0 chr3 75679988 75680050 -83919733 + L1Md_T LINE L1 6519 6582 0 2 1162 645 80 0 0 chr3 75682427 75682515 -83917268 + (TA)n Simple_repeat Simple_repeat 2 89 0 2 1162 227 402 0 0 chr3 75682878 75682970 -83916813 + RMER15 LTR ERVL 371 462 -113 2 1162 625 156 33 33 chr3 75683327 75683475 -83916308 - B2_Mm2 SINE B2 -31 185 38 2 1162 649 233 60 0 chr3 75683510 75683643 -83916140 + Lx5 LINE L1 6617 6757 -293 2 1162 191 61 30 0 chr3 75683910 75683943 -83915840 + (TTTG)n Simple_repeat Simple_repeat 3 36 0 2 1162 189 0 0 0 chr3 75683938 75683959 -83915824 + (TTG)n Simple_repeat Simple_repeat 1 21 0 2 1162 750 180 43 7 chr3 75683959 75684099 -83915684 - B1_Mur3 SINE Alu 0 149 5 2 1162 225 0 0 0 chr3 75685303 75685328 -83914455 + (A)n Simple_repeat Simple_repeat 1 25 0 2 1162 672 251 106 5 chr3 75685546 75685734 -83914049 - ID_B1 SINE B4 -16 208 2 2 1162 700 292 81 4 chr3 75686330 75686588 -83913195 + B4 SINE B4 1 278 -14 2 1162 483 100 0 0 chr3 75686630 75686700 -83913083 + (CA)n Simple_repeat Simple_repeat 2 71 0 2 1162 333 47 0 0 chr3 75687240 75687283 -83912500 + (TG)n Simple_repeat Simple_repeat 1 43 0 2 1162 480 81 0 0 chr3 75687278 75687352 -83912431 + (GA)n Simple_repeat Simple_repeat 1 74 0 2 1162 1808 182 40 51 chr3 75688328 75688699 -83911084 + ORR1B2 LTR MaLR 1 367 0 2 1162 226 0 29 29 chr3 75688801 75688836 -83910947 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 2 1162 31 0 0 0 chr3 75688880 75688911 -83910872 + AT_rich Low_complexity Low_complexity 1 31 0 2 1162 3306 177 69 33 chr3 75689166 75689832 -83909951 + RMER6C LTR ERVK 1 690 0 2 1162 465 362 75 5 chr3 75691135 75691321 -83908462 - B4A SINE B4 -93 199 1 2 1162 1787 28 19 0 chr3 75691428 75691641 -83908142 - L1Md_F3 LINE L1 0 6584 6368 2 1162 295 274 69 82 chr3 75693428 75693587 -83906196 + RLTR18 LTR ERVK 35 191 -425 2 1162 1507 238 17 54 chr3 75693642 75693869 -83905914 + RMER10B LTR ERVL 9 222 -176 2 1162 1260 86 0 0 chr3 75693869 75694044 -83905739 + (TC)n Simple_repeat Simple_repeat 2 176 0 2 1162 1507 238 17 54 chr3 75694044 75694221 -83905562 + RMER10B LTR ERVL 223 398 0 2 1162 215 93 0 23 chr3 75694668 75694712 -83905071 + (TTTTTG)n Simple_repeat Simple_repeat 2 44 0 2 1162 407 355 64 68 chr3 75696229 75696495 -83903288 - B4 SINE B4 -22 270 6 2 1162 223 341 11 0 chr3 75697390 75697478 -83902305 + G-rich Low_complexity Low_complexity 3 91 0 2 1162 694 97 0 31 chr3 75698305 75698433 -83901350 + (TC)n Simple_repeat Simple_repeat 1 124 0 2 1162 505 310 89 16 chr3 75698433 75698623 -83901160 - B4 SINE B4 -87 205 2 2 1162 381 43 0 0 chr3 75698623 75698670 -83901113 + (TTA)n Simple_repeat Simple_repeat 1 47 0 2 1162 559 319 105 50 chr3 75699891 75700168 -83899615 - B4 SINE B4 0 292 1 2 1162 35 63 0 0 chr3 75700223 75700286 -83899497 + AT_rich Low_complexity Low_complexity 1 63 0 2 1162 517 246 111 7 chr3 75701125 75701260 -83898523 - RSINE1 SINE B4 -14 151 3 2 1162 205 336 123 0 chr3 75701670 75701792 -83897991 + MER5A DNA MER1_type 52 188 -1 2 1162 198 0 0 0 chr3 75702505 75702527 -83897256 + (TCTG)n Simple_repeat Simple_repeat 4 25 0 2 1162 920 279 64 50 chr3 75703065 75703348 -83896435 - B4A SINE B4 -4 288 2 2 1162 216 137 13 40 chr3 75703517 75703593 -83896190 + A-rich Low_complexity Low_complexity 2 75 0 2 1162 1152 194 45 23 chr3 75703668 75703889 -83895894 + URR1A DNA MER1_type 1 226 0 2 1162 247 269 12 37 chr3 75704007 75704088 -83895695 - RSINE1 SINE B4 -74 91 13 2 1162 348 350 47 89 chr3 75704195 75704430 -83895353 + MLT1A0 LTR MaLR 10 234 -131 2 1162 23 0 0 0 chr3 75704654 75704677 -83895106 + AT_rich Low_complexity Low_complexity 1 23 0 2 1162 329 242 88 29 chr3 75704787 75704889 -83894894 + B4 SINE B4 185 292 0 2 1162 787 235 153 32 chr3 75705223 75705504 -83894279 + Lx8 LINE L1 7156 7470 -3 2 1162 222 193 0 0 chr3 75706857 75706914 -83892869 + (TG)n Simple_repeat Simple_repeat 2 58 0 2 1162 623 298 70 0 chr3 75706934 75707092 -83892691 - B3A SINE B2 -29 169 1 2 1162 973 321 46 15 chr3 75708942 75709322 -83890461 - MTE2a LTR MaLR -15 404 18 2 1162 1307 113 43 0 chr3 75709456 75709641 -83890142 + B2_Mm2 SINE B2 2 194 -1 2 1162 1014 211 14 14 chr3 75709944 75710151 -83889632 + B3 SINE B2 10 216 0 2 1162 365 283 107 79 chr3 75710852 75711105 -83888678 - MER2 DNA MER2_type -13 332 73 2 1162 342 0 0 0 chr3 75712256 75712294 -83887489 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 2 1162 398 222 14 0 chr3 75712295 75712367 -83887416 - ID4_ SINE ID -7 76 4 2 1162 631 244 8 0 chr3 75713460 75713587 -83886196 + ID_B1 SINE B4 88 215 -9 2 1162 336 77 0 0 chr3 75713743 75713795 -83885988 + (T)n Simple_repeat Simple_repeat 1 52 0 2 1162 895 124 41 12 chr3 75714854 75715025 -83884758 + Lx LINE L1 6472 6647 -7 2 1162 261 0 0 0 chr3 75715376 75715405 -83884378 + (CAA)n Simple_repeat Simple_repeat 2 30 0 2 1162 300 148 0 0 chr3 75717245 75717306 -83882477 + (CA)n Simple_repeat Simple_repeat 2 62 0 2 1162 683 239 17 107 chr3 75717805 75718039 -83881744 + B3 SINE B2 4 216 0 2 1162 342 67 0 0 chr3 75718039 75718084 -83881699 + (TTTA)n Simple_repeat Simple_repeat 2 46 0 2 1162 180 0 0 0 chr3 75718331 75718351 -83881432 + (CAG)n Simple_repeat Simple_repeat 2 21 0 3 1162 696 337 21 17 chr3 75718804 75719091 -83880692 - B4A SINE B4 -4 288 1 3 1162 231 233 0 0 chr3 75719644 75719747 -83880036 + A-rich Low_complexity Low_complexity 1 103 0 3 1162 807 259 152 19 chr3 75720606 75720921 -83878862 + ORR1E LTR MaLR 1 357 -2 3 1162 281 303 49 98 chr3 75721111 75721356 -83878427 - L2a LINE L2 -12 3414 3182 3 1162 1160 56 0 7 chr3 75721380 75721523 -83878260 + B1_Mus2 SINE Alu 5 146 -1 3 1162 222 261 124 11 chr3 75721731 75721820 -83877963 - L2a LINE L2 -516 2903 2805 3 1162 376 327 20 26 chr3 75722030 75722181 -83877602 + RMER15 LTR ERVL 298 447 -128 3 1162 493 285 147 93 chr3 75722206 75722539 -83877244 + Lx8 LINE L1 7122 7472 -1 3 1162 306 206 0 14 chr3 75722548 75722617 -83877166 + L1ME3 LINE L1 5879 5946 -216 3 1162 405 0 0 0 chr3 75722642 75722687 -83877096 + (TG)n Simple_repeat Simple_repeat 1 45 0 3 1162 703 327 109 20 chr3 75722771 75723323 -83876460 - Kanga2_a DNA Tc2 -238 650 50 3 1162 216 316 63 0 chr3 75723390 75723469 -83876314 - L2 LINE L2 -517 2902 2819 3 1162 364 283 216 65 chr3 75723760 75723945 -83875838 + ID_B1 SINE B4 1 213 -11 3 1162 437 152 28 9 chr3 75723973 75724079 -83875704 + (TCTA)n Simple_repeat Simple_repeat 1 108 0 3 1162 739 157 16 8 chr3 75725427 75725555 -83874228 - RLTR25B LTR ERVK 0 1103 975 3 1162 4592 135 41 21 chr3 75725531 75726341 -83873442 - RLTR25B LTR ERVK -202 826 1 3 1162 372 103 0 0 chr3 75726545 75726603 -83873180 + (CA)n Simple_repeat Simple_repeat 2 59 0 3 1162 23 0 0 0 chr3 75727344 75727367 -83872416 + AT_rich Low_complexity Low_complexity 1 23 0 3 1162 341 296 97 48 chr3 75727393 75727536 -83872247 + Tigger5 DNA MER2_type 26 183 -2223 3 1162 1489 218 91 34 chr3 75727536 75727888 -83871895 - ORR1D1 LTR MaLR 0 374 3 3 1162 341 296 97 48 chr3 75727888 75727971 -83871812 + Tigger5 DNA MER2_type 184 262 -2144 3 1162 314 290 32 0 chr3 75727956 75728049 -83871734 + Tigger5 DNA MER2_type 2310 2405 -1 3 1162 355 174 23 0 chr3 75728327 75728413 -83871370 + (TA)n Simple_repeat Simple_repeat 2 89 0 3 1162 225 263 40 0 chr3 75729027 75729103 -83870680 + L4 LINE RTE 284 362 -1667 3 1162 1384 329 85 52 chr3 75730064 75730902 -83868881 + MLT1A1-int LTR MaLR 786 1718 -17 3 1162 305 392 23 28 chr3 75730896 75731072 -83868711 + MLT1A1 LTR MaLR 16 190 -218 3 1162 282 271 27 27 chr3 75731077 75731187 -83868596 + CT-rich Low_complexity Low_complexity 6 115 0 3 1162 411 247 56 9 chr3 75731197 75731317 -83868466 + MLT1A1 LTR MaLR 281 490 -15 3 1162 520 14 29 0 chr3 75731317 75731386 -83868397 + (CA)n Simple_repeat Simple_repeat 2 72 0 3 1162 369 0 0 0 chr3 75731586 75731627 -83868156 + (TA)n Simple_repeat Simple_repeat 1 41 0 3 1162 315 0 0 0 chr3 75731627 75731661 -83868122 + (GA)n Simple_repeat Simple_repeat 2 36 0 3 1162 437 186 31 0 chr3 75733438 75733567 -83866216 + (TA)n Simple_repeat Simple_repeat 1 133 0 3 1162 360 347 45 75 chr3 75733791 75734059 -83865724 + RMER15 LTR ERVL 188 447 -128 3 1162 615 206 23 64 chr3 75734148 75734319 -83865464 + RMER15 LTR ERVL 407 570 -5 3 1162 216 302 16 0 chr3 75734343 75734406 -83865377 - PB1D10 SINE Alu -7 110 47 3 1162 923 252 68 75 chr3 75735217 75735285 -83864498 - MTEa LTR MaLR 0 379 310 3 1162 3738 3 0 0 chr3 75735285 75735675 -83864108 + L1Md_A LINE L1 6193 6582 0 3 1162 923 252 68 75 chr3 75735675 75735927 -83863856 - MTEa LTR MaLR -70 309 61 3 1162 2110 224 91 13 chr3 75736354 75736825 -83862958 - RLTR18B LTR ERVK -4 508 1 3 1162 345 254 98 15 chr3 75736889 75737021 -83862762 + Lx8 LINE L1 7321 7463 -10 3 1162 27 0 0 0 chr3 75737022 75737049 -83862734 + AT_rich Low_complexity Low_complexity 1 27 0 3 1162 1473 134 49 20 chr3 75737069 75737332 -83862451 - RMER6C LTR ERVK 0 690 383 3 1162 180 135 0 0 chr3 75737332 75737369 -83862414 + (AACTG)n Simple_repeat Simple_repeat 2 38 0 3 1162 1473 173 149 87 chr3 75737369 75737683 -83862100 - RMER6C LTR ERVK -308 382 10 3 1162 228 132 0 0 chr3 75737977 75738015 -83861768 + Lx7 LINE L1 4646 4683 -1197 3 1162 7615 187 65 37 chr3 75737992 75739092 -83860691 + Lx7 LINE L1 5099 6208 -1488 3 1162 378 0 0 0 chr3 75739092 75739134 -83860649 + (CA)n Simple_repeat Simple_repeat 1 42 0 3 1162 7615 222 99 30 chr3 75739134 75740190 -83859593 + Lx7 LINE L1 6209 7338 -358 3 1162 2161 139 12 6 chr3 75740190 75740515 -83859268 + ORR1A2 LTR MaLR 1 327 0 3 1162 7615 222 99 30 chr3 75740515 75740822 -83858961 + Lx7 LINE L1 7339 7695 -1 3 1162 503 194 234 6 chr3 75740994 75741165 -83858618 + Lx9 LINE L1 7420 7629 -15 3 1162 741 314 16 0 chr3 75741204 75741395 -83858388 + B4 SINE B4 84 277 -15 3 1162 293 318 0 0 chr3 75742892 75742958 -83856825 - ID4_ SINE ID -1 82 17 3 1162 466 272 53 18 chr3 75742963 75743115 -83856668 - B1F SINE Alu -19 292 10 3 1162 567 299 6 13 chr3 75743142 75743298 -83856485 - B3A SINE B2 -1 197 43 3 1162 477 47 0 0 chr3 75743991 75744055 -83855728 + (CCAA)n Simple_repeat Simple_repeat 2 65 0 3 1162 349 247 11 11 chr3 75744287 75744377 -83855406 + B4A SINE B4 1 90 -202 3 1162 2721 104 0 18 chr3 75744377 75744759 -83855024 - Lx2 LINE L1 -234 6763 6389 3 1162 1490 146 8 46 chr3 75744761 75745020 -83854763 + Lx2 LINE L1 6748 6996 -1 3 1162 346 287 105 59 chr3 75745029 75745181 -83854602 + B4A SINE B4 83 241 -51 3 1162 267 318 75 9 chr3 75745314 75745434 -83854349 - PB1D10 SINE Alu -18 131 7 3 1162 21 57 0 0 chr3 75745808 75745843 -83853940 + AT_rich Low_complexity Low_complexity 1 35 0 3 1162 719 266 83 51 chr3 75746969 75747223 -83852560 - B4A SINE B4 -1 291 30 3 1162 284 228 12 48 chr3 75747293 75747376 -83852407 - U2 snRNA snRNA -103 85 6 3 1162 23 0 0 0 chr3 75748057 75748080 -83851703 + AT_rich Low_complexity Low_complexity 1 23 0 3 1162 511 248 99 0 chr3 75749470 75749591 -83850192 + B1_Mur1 SINE Alu 10 142 -7 3 1162 443 17 34 0 chr3 75749689 75749748 -83850035 + (TGGA)n Simple_repeat Simple_repeat 4 64 0 3 1162 498 310 68 68 chr3 75749851 75750100 -83849683 + MLT1F-int LTR MaLR 262 510 -979 3 1162 664 264 17 39 chr3 75750102 75750283 -83849500 + B3A SINE B2 3 179 -19 3 1162 249 108 0 0 chr3 75750453 75750490 -83849293 + (GGA)n Simple_repeat Simple_repeat 3 39 0 3 1162 1013 291 136 39 chr3 75751015 75751523 -83848260 + MLT1F-int LTR MaLR 833 1389 -100 3 1162 688 285 62 69 chr3 75751795 75752070 -83847713 + B4 SINE B4 7 279 -13 3 1162 223 250 0 29 chr3 75752089 75752159 -83847624 + (CA)n Simple_repeat Simple_repeat 1 68 0 3 1162 778 109 16 0 chr3 75754114 75754242 -83845541 + (GA)n Simple_repeat Simple_repeat 2 131 0 3 1162 978 88 80 0 chr3 75754546 75754683 -83845100 + B1_Mus1 SINE Alu 1 148 0 3 1162 445 297 181 47 chr3 75755179 75755500 -83844283 - MTEb LTR MaLR -2 377 5 3 1162 285 282 206 38 chr3 75756605 75756781 -83843002 - MIRb SINE MIR -46 222 9 3 1162 448 178 29 38 chr3 75756863 75756968 -83842815 - MER5B DNA MER1_type 0 178 75 3 1162 347 131 51 25 chr3 75757172 75757329 -83842454 + (TAGA)n Simple_repeat Simple_repeat 1 161 0 3 1162 398 324 55 50 chr3 75757729 75757911 -83841872 + B4A SINE B4 108 290 -2 3 1162 312 27 0 0 chr3 75758146 75758183 -83841600 + (TG)n Simple_repeat Simple_repeat 2 38 0 3 1162 930 242 4 52 chr3 75758298 75758539 -83841244 + B4A SINE B4 8 236 -56 3 1162 372 22 0 0 chr3 75758562 75758607 -83841176 + (CA)n Simple_repeat Simple_repeat 1 45 0 3 1163 291 271 159 0 chr3 75762333 75762440 -83837343 + PB1 SINE Alu 2 125 -2 3 1163 238 333 0 12 chr3 75762449 75762531 -83837252 + ID2 SINE ID 2 82 -1 3 1163 218 205 0 0 chr3 75762816 75762855 -83836928 + (CA)n Simple_repeat Simple_repeat 2 40 0 3 1163 6926 38 3 1 chr3 75762895 75763676 -83836107 + L1Md_F2 LINE L1 5801 6582 0 3 1163 1141 82 129 0 chr3 75764352 75764523 -83835260 + B2_Mm2 SINE B2 2 194 -1 3 1163 345 100 0 0 chr3 75764524 75764574 -83835209 + (GAAA)n Simple_repeat Simple_repeat 1 50 0 3 1163 731 283 157 38 chr3 75764961 75765306 -83834477 + MTD LTR MaLR 9 394 -25 3 1163 402 228 178 0 chr3 75765821 75765922 -83833861 + PB1D9 SINE Alu 1 119 -1 3 1163 7764 85 20 6 chr3 75765924 75767137 -83832646 + L1_Mus3 LINE L1 5413 6633 -5 3 1163 6123 108 12 0 chr3 75767137 75767954 -83831829 + Lx LINE L1 5827 6653 -1 3 1163 180 185 0 0 chr3 75767961 75768015 -83831768 + A-rich Low_complexity Low_complexity 1 54 0 3 1163 369 346 100 32 chr3 75768069 75768320 -83831463 + B4A SINE B4 5 272 -20 3 1163 346 295 71 24 chr3 75769523 75769693 -83830090 - Tigger13a DNA MER2_type -384 387 210 3 1163 518 335 6 12 chr3 75769938 75770098 -83829685 + RSINE1 SINE B4 4 162 -3 3 1163 194 0 39 0 chr3 75770098 75770124 -83829659 + (TTATA)n Simple_repeat Simple_repeat 5 31 0 3 1163 518 133 11 0 chr3 75770163 75770253 -83829530 + (GA)n Simple_repeat Simple_repeat 2 92 0 3 1163 601 35 47 0 chr3 75770236 75770322 -83829461 + (GGGAA)n Simple_repeat Simple_repeat 2 91 0 3 1163 228 35 0 0 chr3 75770537 75770566 -83829217 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 3 1163 358 299 55 40 chr3 75770841 75771113 -83828670 + Lx4B LINE L1 570 845 -6883 3 1163 1303 251 46 26 chr3 75771456 75771845 -83827938 + Lx4B LINE L1 844 1240 -6488 3 1163 2531 96 39 57 chr3 75771859 75772245 -83827538 - L1Md_F2 LINE L1 0 6582 6204 3 1163 543 209 81 7 chr3 75772245 75772394 -83827389 + Lx4B LINE L1 1523 1682 -4198 3 1163 2470 119 149 10 chr3 75772396 75772813 -83826970 - IAPLTR2_Mm LTR ERVK 0 475 1 3 1163 6247 43 4 12 chr3 75772813 75773565 -83826218 - IAPEz-int LTR ERVK 0 6481 5736 3 1163 2233 72 0 0 chr3 75773564 75773842 -83825941 - IAPEz-int LTR ERVK -4845 1636 1359 3 1163 4961 58 3 56 chr3 75773842 75774533 -83825250 - IAPEz-int LTR ERVK -5819 662 9 3 1163 2473 116 149 10 chr3 75774534 75774951 -83824832 - IAPLTR2_Mm LTR ERVK 0 475 1 3 1163 8436 214 46 70 chr3 75774951 75777389 -83822394 + Lx4B LINE L1 1679 4057 -1823 3 1163 3360 56 15 0 chr3 75777390 75777784 -83821999 - MTB LTR MaLR 0 400 1 3 1163 6334 127 19 71 chr3 75777784 75778942 -83820841 - MTB-int LTR MaLR 0 1098 1 3 1163 3041 68 10 0 chr3 75778942 75779337 -83820446 - MTB LTR MaLR 0 400 2 3 1163 3688 201 36 62 chr3 75779337 75780144 -83819639 + Lx4B LINE L1 4063 4839 -1041 3 1163 5090 207 68 9 chr3 75780142 75781387 -83818396 + Lx4B LINE L1 5547 6885 -173 3 1163 507 17 0 0 chr3 75781387 75781447 -83818336 + (TG)n Simple_repeat Simple_repeat 1 60 0 3 1163 3597 223 100 18 chr3 75781447 75781564 -83818219 + Lx4B LINE L1 6868 7045 -5 3 1163 728 133 16 0 chr3 75781573 75781701 -83818082 + (GAAA)n Simple_repeat Simple_repeat 3 132 0 3 1163 1157 220 21 83 chr3 75781703 75782030 -83817753 + Lx7 LINE L1 4834 5140 -740 3 1163 6673 240 106 16 chr3 75782003 75784002 -83815781 + Lx7 LINE L1 5514 7696 0 3 1163 391 321 75 49 chr3 75784734 75785066 -83814717 - MTEa LTR MaLR -1 378 12 3 1163 21 0 0 0 chr3 75785294 75785315 -83814468 + AT_rich Low_complexity Low_complexity 1 21 0 3 1163 21 0 0 0 chr3 75785592 75785613 -83814170 + AT_rich Low_complexity Low_complexity 1 21 0 3 1163 467 289 134 36 chr3 75785801 75785995 -83813788 - B3 SINE B2 0 216 4 3 1163 576 232 64 21 chr3 75786059 75786200 -83813583 + B3 SINE B2 64 210 -6 3 1163 23 0 0 0 chr3 75786243 75786266 -83813517 + AT_rich Low_complexity Low_complexity 1 23 0 3 1163 323 253 35 0 chr3 75786522 75786609 -83813174 + L1M5 LINE L1 5559 5648 -476 4 1163 311 243 80 45 chr3 75786799 75786911 -83812872 + MLT1A1 LTR MaLR 293 408 0 4 1163 252 89 35 35 chr3 75786997 75787055 -83812728 + (TAGA)n Simple_repeat Simple_repeat 1 58 0 4 1163 345 231 50 19 chr3 75787147 75787306 -83812477 + (TAGA)n Simple_repeat Simple_repeat 3 166 0 4 1163 821 300 33 107 chr3 75787470 75787525 -83812258 - MLT1A0 LTR MaLR 0 365 326 4 1163 1281 94 5 10 chr3 75787525 75787719 -83812064 - L1Md_F2 LINE L1 -3 6579 6387 4 1163 821 300 33 107 chr3 75787719 75788055 -83811728 - MLT1A0 LTR MaLR -40 325 3 4 1163 354 327 19 32 chr3 75788091 75788249 -83811534 - MLT2B1 LTR ERVL -14 553 398 4 1163 1531 268 68 25 chr3 75788249 75788495 -83811288 + RLTR12B LTR ERVK 1 249 -279 4 1163 762 81 0 0 chr3 75788495 75788606 -83811177 + (GA)n Simple_repeat Simple_repeat 2 112 0 4 1163 1531 268 68 25 chr3 75788606 75788841 -83810942 + RLTR12B LTR ERVK 250 503 -25 4 1163 247 123 82 0 chr3 75788841 75788914 -83810869 + A-rich Low_complexity Low_complexity 2 80 0 4 1163 704 271 50 58 chr3 75789115 75789641 -83810142 + RLTR11B LTR ERVK 1 506 -22 4 1163 236 228 283 47 chr3 75789816 75789922 -83809861 - MLT2B4 LTR ERVL -425 131 1 4 1163 1624 197 80 22 chr3 75790738 75791101 -83808682 + ORR1C2 LTR MaLR 1 384 0 4 1163 441 320 79 38 chr3 75792305 75792571 -83807212 - Lx8 LINE L1 -5 7468 7192 4 1163 1750 208 93 5 chr3 75792586 75792963 -83806820 - MTD LTR MaLR -9 410 1 4 1163 1348 321 97 5 chr3 75792965 75793541 -83806242 - Lx8 LINE L1 -517 6956 6328 4 1163 1343 243 98 7 chr3 75793538 75793956 -83805827 - L1_Mur3 LINE L1 -1061 4819 4364 4 1163 2884 122 19 23 chr3 75794061 75794532 -83805251 + Lx LINE L1 6180 6648 -6 4 1163 495 0 0 0 chr3 75794931 75794986 -83804797 + (TG)n Simple_repeat Simple_repeat 2 56 0 4 1163 2777 97 2 2 chr3 75795876 75796270 -83803513 - Lx LINE L1 -8 6646 6253 4 1163 45 0 0 0 chr3 75796293 75796338 -83803445 + AT_rich Low_complexity Low_complexity 1 45 0 4 1163 24 0 0 0 chr3 75796392 75796416 -83803367 + AT_rich Low_complexity Low_complexity 1 24 0 4 1163 1548 251 74 10 chr3 75796418 75796824 -83802959 - Lx6 LINE L1 -10 7450 7019 4 1163 5154 85 21 17 chr3 75798171 75798953 -83800830 - L1Md_F2 LINE L1 -540 6042 5255 4 1163 3763 82 29 0 chr3 75798953 75799467 -83800316 + L1_Mus1 LINE L1 6038 6566 -1 4 1163 5154 127 29 38 chr3 75799467 75799743 -83800040 - L1Md_F2 LINE L1 -629 5254 4987 4 1163 5748 73 4 9 chr3 75799744 75800515 -83799268 + Lx3_Mus LINE L1 6243 7009 0 4 1163 408 40 0 0 chr3 75800566 75800616 -83799167 + (TAAG)n Simple_repeat Simple_repeat 2 51 0 4 1163 2576 183 62 31 chr3 75800630 75801149 -83798634 + Lx5 LINE L1 6513 7047 -3 4 1163 4266 31 0 4 chr3 75801150 75801660 -83798123 + L1Md_F3 LINE L1 6063 6570 -14 4 1163 990 287 46 65 chr3 75801769 75801882 -83797901 - Lx9 LINE L1 -32 7612 7513 4 1163 294 29 0 0 chr3 75801882 75801917 -83797866 + (CA)n Simple_repeat Simple_repeat 2 36 0 4 1163 990 287 46 65 chr3 75801917 75802407 -83797376 - Lx9 LINE L1 -132 7512 7021 4 1163 1199 324 14 35 chr3 75802431 75802917 -83796866 + Lx9 LINE L1 6475 6950 -694 4 1163 415 268 48 108 chr3 75802946 75803113 -83796670 + B3 SINE B2 60 216 0 4 1163 578 292 0 63 chr3 75803129 75803319 -83796464 + Lx9 LINE L1 6589 6766 -878 4 1163 348 256 102 10 chr3 75803649 75803752 -83796031 + B3A SINE B2 1 119 -79 4 1163 541 129 21 0 chr3 75803805 75803898 -83795885 + BC1_Mm scRNA scRNA 2 96 -56 4 1163 1699 237 52 10 chr3 75804302 75804702 -83795081 + MTD LTR MaLR 1 417 -2 4 1163 352 326 93 0 chr3 75805180 75805352 -83794431 + B3 SINE B2 1 188 -28 4 1163 331 123 0 0 chr3 75805639 75805696 -83794087 + Lx3A LINE L1 6925 6981 0 4 1163 2672 270 56 31 chr3 75805979 75806954 -83792829 + Lx9 LINE L1 6473 7472 -172 4 1163 2244 172 53 157 chr3 75807282 75807964 -83791819 - RMER19C LTR ERVK 0 611 1 4 1163 730 158 48 48 chr3 75807964 75808170 -83791613 - MurERV4_19-int LTR ERVK 0 5780 5575 4 1163 567 306 154 59 chr3 75808177 75808632 -83791151 + Lx8 LINE L1 6963 7460 -13 4 1163 21 36 0 0 chr3 75809176 75809204 -83790579 + AT_rich Low_complexity Low_complexity 1 28 0 4 1163 1215 254 91 24 chr3 75809523 75809862 -83789921 - ORR1D2 LTR MaLR -6 364 3 4 1163 674 24 12 0 chr3 75810238 75810322 -83789461 + (TAGA)n Simple_repeat Simple_repeat 4 88 0 4 1163 471 335 68 17 chr3 75810485 75810722 -83789061 - MLT1F1 LTR MaLR -1 568 320 4 1163 325 343 12 24 chr3 75812017 75812187 -83787596 - MuRRS4-int LTR ERV1 -2634 2429 2262 4 1163 831 39 0 0 chr3 75812361 75812464 -83787319 + (GA)n Simple_repeat Simple_repeat 2 104 0 4 1163 6092 149 54 112 chr3 75812884 75814032 -83785751 - ORR1A4-int LTR MaLR -683 1280 227 4 1163 1912 157 12 15 chr3 75814032 75814362 -83785421 + ORR1A4 LTR MaLR 1 329 0 4 1163 6092 149 54 112 chr3 75814362 75814573 -83785210 - ORR1A4-int LTR MaLR -1737 226 1 4 1163 1651 166 9 71 chr3 75814573 75814910 -83784873 - ORR1A4 LTR MaLR 0 329 14 4 1163 807 281 37 15 chr3 75815572 75815843 -83783940 + B4A SINE B4 2 278 -14 4 1163 3853 72 50 13 chr3 75816068 75816614 -83783169 - L1Md_F2 LINE L1 -12 6570 6005 4 1163 201 138 0 0 chr3 75817110 75817139 -83782644 + (TCTCCC)n Simple_repeat Simple_repeat 6 34 0 4 1163 448 180 11 50 chr3 75817139 75817320 -83782463 + CT-rich Low_complexity Low_complexity 3 176 0 4 1163 186 43 0 0 chr3 75817542 75817565 -83782218 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 4 1163 3150 38 14 43 chr3 75817586 75818000 -83781783 - L1Md_F3 LINE L1 -12 6572 6171 4 1163 2855 90 22 12 chr3 75818205 75818608 -83781175 + MTB_Mm LTR MaLR 1 407 0 4 1163 255 190 0 0 chr3 75818639 75818697 -83781086 + A-rich Low_complexity Low_complexity 1 58 0 4 1163 213 164 51 68 chr3 75819155 75819214 -83780569 - B2_Mm2 SINE B2 -137 58 1 4 1163 1530 179 55 0 chr3 75820180 75820469 -83779314 + ORR1B2 LTR MaLR 2 306 -61 4 1163 287 178 27 140 chr3 75820469 75820563 -83779220 + RMER16 LTR ERVK 1 131 -402 4 1163 5062 65 3 59 chr3 75820563 75821297 -83778486 - L1_Mus1 LINE L1 -288 6279 5587 4 1163 3578 52 0 0 chr3 75822061 75822507 -83777276 + L1Md_F2 LINE L1 5141 5586 -297 4 1163 7549 67 5 4 chr3 75822508 75823502 -83776281 + L1Md_F2 LINE L1 5588 6582 0 4 1163 2613 230 57 24 chr3 75823718 75824310 -83775473 - RLTR18 LTR ERVK 0 616 5 4 1163 240 190 241 0 chr3 75824649 75824707 -83775076 - B3A SINE B2 -122 76 5 4 1163 5790 59 39 3 chr3 75824752 75825504 -83774279 - L1Md_F2 LINE L1 0 6582 5804 4 1163 1368 165 94 0 chr3 75825555 75825821 -83773962 - Lx2 LINE L1 -1 6996 6706 4 1163 413 313 28 16 chr3 75825916 75826098 -83773685 - Lx9 LINE L1 -1676 5968 5785 4 1163 395 256 14 0 chr3 75826136 75826268 -83773515 - Lx9 LINE L1 -380 5467 5333 4 1163 378 0 0 0 chr3 75826414 75826456 -83773327 + (CA)n Simple_repeat Simple_repeat 1 42 0 4 1163 306 0 0 0 chr3 75826461 75826495 -83773288 + (GA)n Simple_repeat Simple_repeat 1 34 0 4 1163 225 0 0 0 chr3 75826498 75826523 -83773260 + (TG)n Simple_repeat Simple_repeat 2 26 0 4 1163 243 184 145 0 chr3 75826590 75826666 -83773117 + L1M5 LINE L1 5344 5430 -732 4 1163 649 270 93 91 chr3 75826636 75827165 -83772618 + L1MA4 LINE L1 5401 5930 -370 4 1163 393 103 0 0 chr3 75827193 75827261 -83772522 + (CA)n Simple_repeat Simple_repeat 2 69 0 4 1163 276 303 95 36 chr3 75827481 75827618 -83772165 - B1F2 SINE Alu 0 149 5 4 1163 29 0 0 0 chr3 75827903 75827932 -83771851 + AT_rich Low_complexity Low_complexity 1 29 0 4 1163 279 335 112 48 chr3 75829176 75829427 -83770356 + ORR1E LTR MaLR 19 285 -74 4 1163 29 60 0 0 chr3 75830880 75830930 -83768853 + AT_rich Low_complexity Low_complexity 1 50 0 4 1163 325 355 95 61 chr3 75834108 75834339 -83765444 - B4A SINE B4 -13 279 41 4 1163 296 247 0 36 chr3 75834361 75834445 -83765338 - B1_Mus2 SINE Alu 0 147 67 4 1163 494 252 94 70 chr3 75834390 75834561 -83765222 + MTEb LTR MaLR 197 371 -8 4 1163 1223 286 32 7 chr3 75834794 75835398 -83764385 - Lx6 LINE L1 -161 7299 6457 4 1163 263 310 0 17 chr3 75835424 75835483 -83764300 - tRNA-Ala-GCY_ tRNA tRNA -6 69 12 4 1163 233 336 52 13 chr3 75835671 75835825 -83763958 - L1MC3 LINE L1 -177 7608 7449 4 1163 1735 267 49 62 chr3 75835902 75836469 -83763314 - MTD-int LTR MaLR -698 560 1 4 1163 1511 257 49 31 chr3 75836469 75836854 -83762929 - MTD LTR MaLR 0 419 28 4 1163 217 89 89 0 chr3 75836862 75836907 -83762876 + A-rich Low_complexity Low_complexity 2 50 0 4 1163 1009 343 95 12 chr3 75837983 75838908 -83760875 + Lx8 LINE L1 6442 7443 -30 4 1163 304 312 104 29 chr3 75838950 75839297 -83760486 - L1MB8 LINE L1 -179 5999 5627 4 1163 286 252 80 10 chr3 75839335 75839435 -83760348 - L1MB8 LINE L1 -629 5555 5449 4 1163 8674 137 45 5 chr3 75839435 75841712 -83758071 - Lx LINE L1 -6 6648 4270 4 1163 562 313 62 6 chr3 75841991 75842404 -83757379 - L1MB8 LINE L1 -1071 5072 4639 4 1163 23 0 0 0 chr3 75842574 75842597 -83757186 + AT_rich Low_complexity Low_complexity 1 23 0 4 1163 302 239 42 42 chr3 75842864 75842960 -83756823 - ORR1C1 LTR MaLR -4 374 279 4 1163 944 155 87 10 chr3 75842961 75843156 -83756627 + Lx4B LINE L1 6845 7054 -4 4 1163 1165 50 0 0 chr3 75843283 75843423 -83756360 + B1_Mus2 SINE Alu 2 141 -6 4 1163 357 24 0 0 chr3 75843425 75843467 -83756316 + (TAA)n Simple_repeat Simple_repeat 2 43 0 4 1163 310 213 26 69 chr3 75843602 75843718 -83756065 + L1M2 LINE L1 4129 4239 -1904 4 1163 245 261 14 0 chr3 75843782 75843851 -83755932 + L1MA6 LINE L1 6225 6294 -6 4 1163 22 70 0 0 chr3 75844233 75844276 -83755507 + AT_rich Low_complexity Low_complexity 1 43 0 4 1163 1160 193 0 0 chr3 75844653 75844855 -83754928 - Lx5 LINE L1 -372 6678 6477 4 1163 321 201 279 71 chr3 75845651 75845934 -83753849 + Lx7 LINE L1 7355 7696 0 4 1163 2503 308 48 32 chr3 75845918 75847055 -83752728 - RMER1C Other Other 0 1342 384 4 1163 252 0 0 0 chr3 75847264 75847292 -83752491 + (CA)n Simple_repeat Simple_repeat 1 28 0 4 1163 26 30 0 0 chr3 75847926 75847959 -83751824 + AT_rich Low_complexity Low_complexity 1 33 0 5 1163 431 363 52 54 chr3 75848288 75848733 -83751050 + Kanga1c DNA Tc2 186 629 -100 5 1163 1644 156 42 16 chr3 75848855 75849167 -83750616 + Lx5 LINE L1 6731 7050 0 5 1163 274 296 77 51 chr3 75849601 75849954 -83749829 + L1MC LINE L1 3706 4067 -2079 5 1163 451 316 51 23 chr3 75850127 75850341 -83749442 - ID_B1 SINE B4 -1 223 4 5 1163 22 0 0 0 chr3 75850402 75850424 -83749359 + AT_rich Low_complexity Low_complexity 1 22 0 5 1163 260 284 54 43 chr3 75852223 75852315 -83747468 + MER57C2 LTR ERV1 300 392 -42 5 1163 930 292 84 19 chr3 75852967 75853383 -83746400 - Lx8 LINE L1 -5 7468 7026 5 1163 365 355 43 5 chr3 75853939 75854126 -83745657 + Lx8 LINE L1 6590 6783 -690 5 1163 6771 191 33 79 chr3 75854634 75856952 -83742831 - Lx5 LINE L1 -3 7047 5084 5 1163 6667 88 36 86 chr3 75856952 75858040 -83741743 + RLTR13D4 LTR ERVK 1 1033 0 5 1163 3626 165 21 9 chr3 75858040 75858485 -83741298 - Lx5 LINE L1 -794 5083 4629 5 1163 528 91 0 13 chr3 75858543 75858621 -83741162 + Lx5 LINE L1 5375 5451 -426 5 1163 833 161 31 0 chr3 75858608 75858769 -83741014 + L1_Mur2 LINE L1 4942 5107 -770 5 1163 6074 203 41 15 chr3 75858769 75860275 -83739508 + Lx5 LINE L1 5446 6998 -52 5 1163 402 69 0 0 chr3 75860294 75860352 -83739431 + (TAAA)n Simple_repeat Simple_repeat 2 59 0 5 1163 2854 91 5 2 chr3 75861066 75861461 -83738322 + MTA_Mm LTR MaLR 1 396 0 5 1163 299 292 8 42 chr3 75862207 75862325 -83737458 + CT-rich Low_complexity Low_complexity 3 116 0 5 1163 334 340 100 34 chr3 75862666 75862846 -83736937 + Lx8 LINE L1 7133 7329 -144 5 1163 279 0 0 0 chr3 75862846 75862877 -83736906 + (TG)n Simple_repeat Simple_repeat 2 32 0 5 1163 334 340 100 34 chr3 75862877 75863016 -83736767 + Lx8 LINE L1 7330 7473 0 5 1163 7117 106 8 3 chr3 75863819 75864837 -83734946 - L1_Mus4 LINE L1 -2 6634 5612 5 1163 1357 144 0 0 chr3 75864832 75865040 -83734743 + L1_Mus4 LINE L1 5413 5620 -263 5 1163 3667 159 19 16 chr3 75865038 75866153 -83733630 - L1VL4 LINE L1 -2247 1312 193 5 1163 308 273 0 0 chr3 75867009 75867075 -83732708 + MTEa LTR MaLR 20 85 -294 5 1163 6335 68 4 14 chr3 75867075 75867920 -83731863 - L1_Mus2 LINE L1 -1 6565 5730 5 1163 6406 124 11 7 chr3 75867933 75869229 -83730554 + Lx3B LINE L1 5292 6586 -387 5 1163 444 167 0 0 chr3 75869229 75869319 -83730464 + Lx3B LINE L1 6873 6962 -14 5 1163 212 200 0 39 chr3 75869319 75869371 -83730412 + GA-rich Low_complexity Low_complexity 3 52 0 5 1163 413 250 10 77 chr3 75869382 75869486 -83730297 + MTEa LTR MaLR 104 200 -179 5 1163 330 317 99 14 chr3 75869534 75869675 -83730108 - RSINE1 SINE B4 -8 157 5 5 1163 544 288 25 18 chr3 75869675 75869838 -83729945 + MTEa LTR MaLR 216 379 0 5 1163 352 214 51 51 chr3 75870067 75870185 -83729598 + B4A SINE B4 167 284 -8 5 1163 667 147 0 8 chr3 75870782 75870899 -83728884 - Lx4B LINE L1 -328 6730 6615 5 1163 282 311 42 70 chr3 75871535 75871677 -83728106 - Lx7 LINE L1 0 7696 7559 5 1163 335 252 129 36 chr3 75871826 75871966 -83727817 - Lx7 LINE L1 -437 7259 7107 5 1163 22 0 0 0 chr3 75872635 75872657 -83727126 + AT_rich Low_complexity Low_complexity 1 22 0 5 1163 271 369 139 0 chr3 75873655 75873777 -83726006 + RSINE1 SINE B4 14 152 -13 5 1163 229 330 11 0 chr3 75873780 75873871 -83725912 + CT-rich Low_complexity Low_complexity 1 92 0 5 1163 447 141 0 0 chr3 75873897 75873968 -83725815 + B3 SINE B2 5 75 -141 5 1163 395 343 22 7 chr3 75874358 75874496 -83725287 - RSINE1 SINE B4 -25 140 1 5 1163 1019 276 43 42 chr3 75875261 75875628 -83724155 - MTD LTR MaLR 0 419 16 5 1163 285 109 0 0 chr3 75875628 75875674 -83724109 + (CTAA)n Simple_repeat Simple_repeat 3 48 0 5 1163 623 300 115 52 chr3 75875674 75875689 -83724094 - MTD LTR MaLR -392 15 1 5 1163 25 65 0 0 chr3 75875790 75875836 -83723947 + AT_rich Low_complexity Low_complexity 1 46 0 5 1163 535 122 35 0 chr3 75876329 75876444 -83723339 + C-rich Low_complexity Low_complexity 2 120 0 5 1163 334 19 75 0 chr3 75877496 75877549 -83722234 + (TTTTTG)n Simple_repeat Simple_repeat 4 60 0 5 1163 25 51 0 0 chr3 75878955 75878994 -83720789 + AT_rich Low_complexity Low_complexity 1 39 0 5 1163 25 0 0 0 chr3 75879009 75879034 -83720749 + AT_rich Low_complexity Low_complexity 1 25 0 5 1163 366 121 11 42 chr3 75881342 75881437 -83718346 + (TA)n Simple_repeat Simple_repeat 2 93 0 5 1163 324 0 0 0 chr3 75881872 75881908 -83717875 + (TC)n Simple_repeat Simple_repeat 2 37 0 5 1163 372 59 0 0 chr3 75881908 75881958 -83717825 + (TG)n Simple_repeat Simple_repeat 2 52 0 5 1163 363 23 0 0 chr3 75883243 75883287 -83716496 + (CA)n Simple_repeat Simple_repeat 2 45 0 5 1163 919 313 76 4 chr3 75884785 75885048 -83714735 + B4A SINE B4 11 292 0 5 1163 189 196 0 0 chr3 75885050 75885101 -83714682 + (CATA)n Simple_repeat Simple_repeat 1 51 0 5 1163 21 0 0 0 chr3 75885674 75885695 -83714088 + AT_rich Low_complexity Low_complexity 1 21 0 5 1163 269 329 149 5 chr3 75885744 75885952 -83713831 - L2a LINE L2 -8 3418 3181 5 1163 189 195 0 0 chr3 75886667 75886708 -83713075 + (CA)n Simple_repeat Simple_repeat 2 42 0 5 1163 1147 313 99 76 chr3 75887006 75887743 -83712040 + MTE-int LTR MaLR 37 790 -790 5 1163 528 389 35 25 chr3 75887727 75888012 -83711771 + MTE-int LTR MaLR 1075 1362 -218 5 1163 9599 106 10 16 chr3 75888014 75889786 -83709997 - Lx3_Mus LINE L1 0 7009 5245 5 1163 356 82 0 0 chr3 75889788 75889837 -83709946 - Lx3_Mus LINE L1 -1100 4786 4738 5 1163 225 311 67 19 chr3 75889837 75889942 -83709841 + MTE-int LTR MaLR 1416 1525 -55 5 1164 41106 6 1 0 chr3 75890796 75897199 -83702584 - L1Md_A LINE L1 0 6582 205 5 1164 676 141 103 7 chr3 75897900 75898036 -83701747 + Lx2 LINE L1 6849 6997 0 5 1164 228 310 102 17 chr3 75898492 75898610 -83701173 - B1F SINE Alu 0 149 22 5 1164 627 274 45 0 chr3 75899249 75899428 -83700355 - Lx9 LINE L1 -235 7409 7223 5 1164 942 235 47 9 chr3 75899427 75899659 -83700124 + Lx9 LINE L1 6970 7210 -434 5 1164 531 290 70 15 chr3 75899682 75899867 -83699916 - B3 SINE B2 -7 188 3 5 1164 7499 66 9 13 chr3 75899917 75901207 -83698576 - L1Md_F2 LINE L1 -1 6581 5297 5 1164 5964 82 2 1 chr3 75901208 75902027 -83697756 + L1Md_F2 LINE L1 4471 5290 -593 5 1164 338 255 157 0 chr3 75902075 75902177 -83697606 - Lx4B LINE L1 -49 7009 6892 5 1164 29 0 0 0 chr3 75902190 75902219 -83697564 + AT_rich Low_complexity Low_complexity 1 29 0 5 1164 297 0 0 0 chr3 75902882 75902915 -83696868 + (CA)n Simple_repeat Simple_repeat 2 34 0 5 1164 1956 275 36 62 chr3 75904258 75905052 -83694731 - Lx7 LINE L1 -66 7630 6857 5 1164 1812 128 49 46 chr3 75905070 75905398 -83694385 - Lx3_Mus LINE L1 0 7009 6681 5 1164 2072 111 82 51 chr3 75905398 75905787 -83693996 - Lx3_Mus LINE L1 -592 6417 6017 5 1164 3886 258 36 26 chr3 75905782 75905925 -83693858 - Lx7 LINE L1 -836 6860 6723 5 1164 2786 84 23 5 chr3 75905925 75906318 -83693465 + MTB LTR MaLR 1 400 0 5 1164 3886 258 36 26 chr3 75906318 75907268 -83692515 - Lx7 LINE L1 -974 6722 5756 5 1164 1323 231 78 31 chr3 75907261 75907747 -83692036 - Lx7 LINE L1 -448 5432 4924 5 1164 1902 260 60 29 chr3 75907753 75908415 -83691368 - Lx7 LINE L1 -6460 1268 586 5 1164 301 288 83 10 chr3 75908589 75908782 -83691001 - L1MA7 LINE L1 -16 6275 6069 5 1164 190 155 27 27 chr3 75909617 75909690 -83690093 + (TCTG)n Simple_repeat Simple_repeat 2 74 0 5 1164 291 114 0 0 chr3 75909694 75909738 -83690045 + (TATG)n Simple_repeat Simple_repeat 4 47 0 5 1164 180 97 0 0 chr3 75909738 75909769 -83690014 + (GA)n Simple_repeat Simple_repeat 1 31 0 5 1164 1540 256 115 46 chr3 75909849 75910834 -83688949 - L1_Mur3 LINE L1 -6784 928 1 5 1164 234 265 0 39 chr3 75911846 75911897 -83687886 + Lx8 LINE L1 7242 7290 -183 5 1164 303 148 24 47 chr3 75912292 75912377 -83687406 + Lx3C LINE L1 6894 6976 0 5 1164 599 286 72 40 chr3 75912425 75912746 -83687037 - L1_Rod LINE L1 -14 5833 5503 5 1164 551 316 0 60 chr3 75912944 75913112 -83686671 + B4 SINE B4 129 286 -6 5 1164 227 246 0 0 chr3 75913124 75913185 -83686598 + GA-rich Low_complexity Low_complexity 2 62 0 5 1164 13425 149 20 25 chr3 75913614 75916799 -83682984 - Lx LINE L1 -3 6651 3487 5 1164 281 47 0 23 chr3 75916799 75916843 -83682940 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 5 1164 13425 168 9 36 chr3 75916843 75916999 -83682784 - Lx LINE L1 -2397 3486 3337 5 1164 2664 144 11 2 chr3 75916999 75917437 -83682346 - Lx3B LINE L1 -9 6964 6523 5 1164 344 315 121 6 chr3 75918101 75918433 -83681350 - L1MA6 LINE L1 -100 6200 5831 5 1164 284 314 160 16 chr3 75918755 75919011 -83680772 - Lx8 LINE L1 -23 7450 7158 5 1164 612 84 0 0 chr3 75920428 75920523 -83679260 + L1_Mus4 LINE L1 6537 6631 -5 5 1164 21 71 0 0 chr3 75920551 75920593 -83679190 + AT_rich Low_complexity Low_complexity 1 42 0 5 1164 474 65 0 0 chr3 75921523 75921585 -83678198 + (TCTA)n Simple_repeat Simple_repeat 1 62 0 5 1164 1232 106 16 11 chr3 75921674 75921865 -83677918 - B2_Mm2 SINE B2 -3 192 1 5 1164 4270 167 42 12 chr3 75921868 75922758 -83677025 - L1_Mur2 LINE L1 -2593 3284 2369 5 1164 2387 109 38 86 chr3 75922758 75922960 -83676823 + MTB LTR MaLR 1 188 -212 5 1164 3605 32 18 0 chr3 75922960 75923402 -83676381 + L1Md_F2 LINE L1 6127 6576 -6 5 1164 1068 73 0 0 chr3 75923411 75923548 -83676235 + B1_Mm SINE Alu 1 137 -10 5 1164 926 47 8 0 chr3 75923548 75923676 -83676107 + (CAAAA)n Simple_repeat Simple_repeat 2 130 0 5 1164 2387 109 38 86 chr3 75923676 75923882 -83675901 + MTB LTR MaLR 189 399 -1 5 1164 1621 167 9 44 chr3 75923882 75924220 -83675563 - L1_Mur2 LINE L1 -3504 2373 2048 5 1164 306 0 0 0 chr3 75924448 75924482 -83675301 + (TTA)n Simple_repeat Simple_repeat 1 34 0 5 1164 334 322 33 20 chr3 75924487 75924639 -83675144 - Lx6 LINE L1 -30 7430 7277 5 1164 389 258 100 15 chr3 75924639 75924769 -83675014 - Lx6 LINE L1 -1216 6244 6104 5 1164 189 147 0 0 chr3 75925924 75925958 -83673825 + (TAGA)n Simple_repeat Simple_repeat 4 37 0 5 1164 2094 91 13 3 chr3 75926017 75926326 -83673457 + L1_Mus3 LINE L1 6326 6637 -1 5 1164 233 240 0 0 chr3 75926376 75926426 -83673357 + ID_B1 SINE B4 130 179 -45 5 1164 578 283 80 16 chr3 75926425 75926612 -83673171 - RMER5 LTR ERV1 -15 519 321 5 1164 1407 249 80 34 chr3 75926886 75927013 -83672770 - RMER5 LTR ERV1 -8 526 392 5 1164 605 47 0 0 chr3 75927013 75927099 -83672684 - L1_Mus3 LINE L1 -6 6632 6547 5 1164 1407 249 80 34 chr3 75927099 75927419 -83672364 - RMER5 LTR ERV1 -143 391 58 5 1164 36111 44 1 34 chr3 75929638 75936075 -83663708 - L1Md_T LINE L1 0 6585 278 5 1164 10388 35 1 18 chr3 75936074 75938146 -83661637 - L1Md_A LINE L1 -3412 2471 441 5 1164 244 81 62 46 chr3 75938757 75938822 -83660961 + (TCTA)n Simple_repeat Simple_repeat 4 69 0 5 1164 592 140 37 0 chr3 75939311 75939403 -83660380 + (TCTA)n Simple_repeat Simple_repeat 1 93 0 5 1164 1068 124 0 0 chr3 75939403 75939581 -83660202 + (TCCA)n Simple_repeat Simple_repeat 3 180 0 5 1164 592 140 37 0 chr3 75939581 75939652 -83660131 + (TCTA)n Simple_repeat Simple_repeat 2 76 0 5 1164 420 294 108 14 chr3 75939673 75939821 -83659962 - RSINE1 SINE B4 -3 162 1 6 1164 1719 219 16 56 chr3 75941656 75941942 -83657841 - RLTR22_Mur LTR ERVK 0 1848 1574 6 1164 388 63 0 0 chr3 75941942 75942005 -83657778 - L1_Mus4 LINE L1 -5 6631 6569 6 1164 1719 219 16 56 chr3 75942005 75942144 -83657639 - RLTR22_Mur LTR ERVK -275 1573 1440 6 1164 490 308 186 38 chr3 75942197 75942568 -83657215 - Lx8 LINE L1 -75 7398 6973 6 1164 749 307 35 8 chr3 75942568 75942827 -83656956 - Lx8 LINE L1 -375 7098 6833 6 1164 608 266 146 28 chr3 75942975 75943433 -83656350 - L1_Rod LINE L1 -4435 1412 898 6 1164 385 245 10 39 chr3 75943869 75943971 -83655812 - B1F2 SINE Alu -29 120 22 6 1164 21 0 0 0 chr3 75943984 75944005 -83655778 + AT_rich Low_complexity Low_complexity 1 21 0 6 1164 566 201 16 172 chr3 75944375 75944561 -83655222 - MTEb LTR MaLR 0 379 223 6 1164 525 314 189 4 chr3 75944566 75944836 -83654947 - MTE-int LTR MaLR -1250 330 11 6 1164 708 189 0 0 chr3 75944846 75944989 -83654794 + C-rich Low_complexity Low_complexity 5 147 0 6 1164 180 244 11 22 chr3 75944975 75945067 -83654716 + CT-rich Low_complexity Low_complexity 2 92 0 6 1164 227 260 48 29 chr3 75945068 75945171 -83654612 - MTD LTR MaLR 0 419 315 6 1164 801 142 58 6 chr3 75947539 75947695 -83652088 + Lx3A LINE L1 6812 6975 -6 6 1164 268 349 25 121 chr3 75947764 75947963 -83651820 - RMER15 LTR ERVL -15 560 381 6 1164 25 51 0 0 chr3 75948642 75948681 -83651102 + AT_rich Low_complexity Low_complexity 1 39 0 6 1164 596 273 75 90 chr3 75949255 75949456 -83650327 + B3A SINE B2 1 198 0 6 1164 200 206 0 0 chr3 75949592 75949626 -83650157 + (TATATG)n Simple_repeat Simple_repeat 6 39 0 6 1164 279 79 0 0 chr3 75950322 75950360 -83649423 + (TG)n Simple_repeat Simple_repeat 1 38 0 6 1164 716 259 111 0 chr3 75950383 75950572 -83649211 + MTD LTR MaLR 196 405 -14 6 1164 23955 105 30 3 chr3 75951728 75956781 -83643002 + L1Md_F2 LINE L1 273 5586 -297 6 1164 7059 93 1 7 chr3 75956783 75957776 -83642007 + L1Md_F2 LINE L1 5589 6575 -7 6 1164 564 318 56 0 chr3 75957904 75958102 -83641681 - B3 SINE B2 -5 211 3 6 1164 330 26 0 0 chr3 75958656 75958695 -83641088 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 6 1164 200 61 61 0 chr3 75959013 75959046 -83640737 + (CCCCCT)n Simple_repeat Simple_repeat 2 36 0 6 1164 354 264 11 11 chr3 75960282 75960370 -83639413 + B1F SINE Alu 48 135 -14 6 1164 1538 58 19 0 chr3 75961138 75961345 -83638438 - L1Md_F3 LINE L1 -2 6582 6372 6 1164 243 288 154 99 chr3 75961369 75961531 -83638252 - RMER5 LTR ERV1 -350 184 14 6 1164 192 91 68 0 chr3 75961531 75961575 -83638208 + (CATTT)n Simple_repeat Simple_repeat 2 48 0 6 1164 26 0 0 0 chr3 75962602 75962628 -83637155 + AT_rich Low_complexity Low_complexity 1 26 0 6 1164 21 0 0 0 chr3 75962637 75962658 -83637125 + AT_rich Low_complexity Low_complexity 1 21 0 6 1164 5385 164 13 20 chr3 75962844 75963901 -83635882 - Lx2B LINE L1 -610 5267 4218 6 1164 3231 186 18 7 chr3 75963888 75964501 -83635282 + Lx2B LINE L1 5250 5869 -8 6 1164 5056 104 8 1 chr3 75964688 75965418 -83634365 - L1_Mus3 LINE L1 0 6638 5904 6 1164 2078 153 9 3 chr3 75965418 75965765 -83634018 + L1_Mm LINE L1 4494 4842 -1041 6 1164 5481 174 57 15 chr3 75966691 75967141 -83632642 + Lx2B LINE L1 5870 6328 -672 6 1164 3461 28 0 0 chr3 75967141 75967537 -83632246 - MTA_Mm LTR MaLR 0 396 1 6 1164 5481 174 57 15 chr3 75967537 75968170 -83631613 + Lx2B LINE L1 6329 6999 -1 6 1164 267 349 52 19 chr3 75968897 75969110 -83630673 - L1MC1 LINE L1 0 6333 6114 6 1164 252 259 28 0 chr3 75969220 75969311 -83630472 - L1MC1 LINE L1 -375 5958 5857 6 1164 375 83 0 0 chr3 75969405 75969465 -83630318 + (TG)n Simple_repeat Simple_repeat 2 61 0 6 1164 729 23 0 0 chr3 75969466 75969553 -83630230 + (GA)n Simple_repeat Simple_repeat 2 88 0 6 1164 309 252 43 86 chr3 75969560 75969677 -83630106 - L1MC1 LINE L1 -1181 4965 4854 6 1164 270 253 128 32 chr3 75970240 75970334 -83629449 - MTEb LTR MaLR -113 266 164 6 1164 234 91 0 0 chr3 75970344 75970377 -83629406 + (T)n Simple_repeat Simple_repeat 1 33 0 6 1164 3239 34 0 5 chr3 75970469 75970859 -83628924 - L1Md_F3 LINE L1 -16 6568 6181 6 1164 2289 181 85 25 chr3 75970861 75971343 -83628440 - Lx4A LINE L1 -8 7050 6540 6 1164 25545 76 45 42 chr3 75971360 75971996 -83627787 - L1_Mm LINE L1 -293 5590 4936 6 1164 242 262 47 37 chr3 75971996 75972103 -83627680 + MER72B LTR ERV1 280 387 -381 6 1164 25545 76 45 42 chr3 75972103 75975257 -83624526 - L1_Mm LINE L1 -293 4935 1682 6 1164 489 330 55 8 chr3 75976935 75977123 -83622660 + B3 SINE B2 1 196 -2 6 1164 945 110 0 0 chr3 75977520 75977674 -83622109 + (GA)n Simple_repeat Simple_repeat 1 154 0 6 1164 1006 273 96 40 chr3 75977828 75978129 -83621654 + MTD LTR MaLR 9 326 -93 6 1164 1424 258 63 19 chr3 75978406 75979019 -83620764 - Lx9 LINE L1 -1620 6024 5336 6 1164 1603 226 77 101 chr3 75979019 75979953 -83619830 - L1_Rod LINE L1 -3825 2022 1108 6 1164 900 276 29 47 chr3 75979935 75980213 -83619570 - Lx6 LINE L1 0 7460 7188 6 1164 566 211 113 74 chr3 75980221 75980477 -83619306 - L1_Rod LINE L1 -6495 1113 848 6 1164 3149 92 5 9 chr3 75980475 75980913 -83618870 + Lx LINE L1 6026 6461 -193 6 1164 1286 96 0 0 chr3 75980924 75981112 -83618671 + Lx2 LINE L1 5679 5866 -1131 6 1164 896 86 0 0 chr3 75981115 75981243 -83618540 + L1_Mus2 LINE L1 6438 6565 -1 6 1164 1819 224 157 29 chr3 75981806 75982298 -83617485 - Lx2A1 LINE L1 -6 7002 6448 6 1164 6041 231 38 53 chr3 75982312 75983795 -83615988 - Lx5 LINE L1 -3 7047 5587 6 1164 2053 209 24 0 chr3 75983793 75984253 -83615530 + L1_Mur2 LINE L1 4859 5329 -548 6 1164 25 31 0 0 chr3 75984291 75984323 -83615460 + AT_rich Low_complexity Low_complexity 1 32 0 6 1164 286 325 41 8 chr3 75984346 75984467 -83615316 - Lx5 LINE L1 -45 7005 6881 6 1164 297 0 0 0 chr3 75984579 75984612 -83615171 + (TG)n Simple_repeat Simple_repeat 2 34 0 6 1164 21 0 0 0 chr3 75986828 75986849 -83612934 + AT_rich Low_complexity Low_complexity 1 21 0 6 1164 3286 139 43 0 chr3 75987624 75988162 -83611621 + Lx2 LINE L1 6437 6997 0 6 1164 201 225 0 0 chr3 75988561 75988601 -83611182 + (CAG)n Simple_repeat Simple_repeat 2 41 0 6 1164 350 299 70 79 chr3 75989303 75989532 -83610251 - RLTR12B LTR ERVK -56 472 246 6 1164 672 272 173 58 chr3 75989550 75989795 -83609988 - RLTR12B LTR ERVK -235 293 1 6 1164 1592 162 136 23 chr3 75989939 75990293 -83609490 + ORR1B1 LTR MaLR 1 394 0 6 1164 228 67 0 0 chr3 75990316 75990346 -83609437 + (T)n Simple_repeat Simple_repeat 1 30 0 6 1164 1238 240 113 24 chr3 75990999 75991336 -83608447 - ORR1D1 LTR MaLR 0 374 8 6 1164 1108 84 0 0 chr3 75991519 75991661 -83608122 + B1_Mm SINE Alu 1 142 -5 6 1164 263 28 0 27 chr3 75991666 75991703 -83608080 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 6 1164 330 380 50 6 chr3 75991897 75992077 -83607706 + Tigger5 DNA MER2_type 50 237 -2169 6 1164 1259 271 83 18 chr3 75992211 75992666 -83607117 - RMER5 LTR ERV1 -17 517 33 6 1164 4494 159 13 16 chr3 75994372 75995147 -83604636 + Lx3B LINE L1 6195 6967 -6 6 1164 2279 161 52 7 chr3 75995304 75995723 -83604060 - Lx4B LINE L1 -212 6846 6409 6 1164 720 103 0 0 chr3 75995786 75995893 -83603890 + (CATA)n Simple_repeat Simple_repeat 4 110 0 6 1164 496 286 82 134 chr3 75996023 75996426 -83603357 + ORR1C2 LTR MaLR 2 383 -1 6 1164 21 0 0 0 chr3 75996915 75996936 -83602847 + AT_rich Low_complexity Low_complexity 1 21 0 6 1164 358 159 71 14 chr3 75997285 75997296 -83602487 + B4 SINE B4 70 84 -208 6 1164 444 139 14 0 chr3 75997296 75997368 -83602415 + B1_Mur4 SINE Alu 1 73 -77 6 1164 333 0 0 0 chr3 75997447 75997484 -83602299 + (TG)n Simple_repeat Simple_repeat 2 38 0 6 1164 35 41 0 0 chr3 75997957 75998006 -83601777 + AT_rich Low_complexity Low_complexity 1 49 0 6 1164 267 346 76 6 chr3 75998679 75998836 -83600947 - MLT2B4 LTR ERVL -173 383 216 6 1164 368 274 104 31 chr3 75998860 75999052 -83600731 - Lx8 LINE L1 -1 7472 7267 6 1164 486 275 12 6 chr3 75999109 75999270 -83600513 - Lx8 LINE L1 -343 7130 6969 6 1164 300 198 115 77 chr3 75999342 75999446 -83600337 - MLT2B4 LTR ERVL -420 136 29 6 1164 446 0 19 0 chr3 75999654 75999708 -83600075 + (TTTTTG)n Simple_repeat Simple_repeat 6 60 0 6 1164 828 41 195 0 chr3 75999708 75999831 -83599952 - B1_Mus1 SINE Alu 0 148 2 6 1164 1519 275 105 7 chr3 76000009 76000573 -83599210 - Lx8 LINE L1 -253 7220 6602 1 1164 831 300 81 18 chr3 76000624 76000909 -83598874 - Lx8 LINE L1 -980 6493 6191 1 1164 533 198 73 18 chr3 76001015 76001180 -83598603 - Lx9 LINE L1 -8 7636 7463 2 1164 539 69 0 73 chr3 76001291 76001401 -83598382 - L1_Mus3 LINE L1 -1 6637 6536 3 1164 607 298 74 35 chr3 76001541 76001887 -83597896 - Lx8 LINE L1 -1782 5914 5529 1 1164 960 131 6 11 chr3 76001887 76002064 -83597719 + (TCCC)n Simple_repeat Simple_repeat 3 178 0 4 1164 1184 101 0 6 chr3 76002064 76002243 -83597540 + (TTTC)n Simple_repeat Simple_repeat 3 180 0 5 1164 607 287 39 34 chr3 76002243 76002432 -83597351 - Lx8 LINE L1 -319 5528 5351 1 1164 264 225 34 128 chr3 76003588 76003792 -83595991 - Lx9 LINE L1 -15 7629 7445 6 1164 645 338 37 13 chr3 76003823 76004201 -83595582 - Lx9 LINE L1 -174 7470 7084 7 1164 22 0 0 0 chr3 76004202 76004224 -83595559 + AT_rich Low_complexity Low_complexity 1 22 0 8 1164 969 127 12 6 chr3 76004408 76004575 -83595208 + L1_Mus3 LINE L1 6471 6638 0 9 1164 559 314 58 11 chr3 76004917 76005107 -83594676 - Lx6 LINE L1 -116 7344 7146 1 1164 839 274 19 0 chr3 76005231 76005439 -83594344 - Lx6 LINE L1 -328 7132 6921 1 1164 4274 162 42 36 chr3 76005442 76006404 -83593379 + Lx2 LINE L1 5715 6630 -6 1 1164 4053 236 70 7 chr3 76006413 76008167 -83591616 - Lx6 LINE L1 -627 6833 4950 1 1164 28 48 0 0 chr3 76008170 76008212 -83591571 + AT_rich Low_complexity Low_complexity 1 42 0 1 1164 1795 190 89 5 chr3 76008212 76008603 -83591180 - Lx LINE L1 -5 6649 6226 1 1164 2454 212 5 41 chr3 76008601 76009211 -83590572 - Lx6 LINE L1 -921 4959 4372 1 1164 271 304 22 7 chr3 76010201 76010337 -83589446 + (TATATG)n Simple_repeat Simple_repeat 1 138 0 1 1164 618 270 32 38 chr3 76010337 76010522 -83589261 - B3 SINE B2 -7 209 26 1 1164 540 0 0 0 chr3 76010936 76010996 -83588787 + (TCTA)n Simple_repeat Simple_repeat 2 61 0 1 1164 248 137 0 19 chr3 76011003 76011055 -83588728 + (TA)n Simple_repeat Simple_repeat 2 52 0 1 1164 315 256 110 47 chr3 76011089 76011216 -83588567 + HAL1-3A_ME LINE L1 1975 2109 -749 1 1164 841 118 0 88 chr3 76011496 76011644 -83588139 + B1_Mm SINE Alu 13 147 0 1 1164 363 89 0 0 chr3 76011747 76011803 -83587980 + (TG)n Simple_repeat Simple_repeat 1 56 0 2 1164 468 0 0 0 chr3 76011803 76011854 -83587929 + (GA)n Simple_repeat Simple_repeat 1 52 0 2 1164 22 35 0 0 chr3 76012074 76012103 -83587680 + AT_rich Low_complexity Low_complexity 1 29 0 2 1164 1713 190 80 14 chr3 76012260 76012622 -83587161 - ORR1B1 LTR MaLR -8 386 1 2 1164 2284 304 86 34 chr3 76012697 76013786 -83585997 - Lx8 LINE L1 -11 7462 6317 2 1164 25 65 0 0 chr3 76013928 76013974 -83585809 + AT_rich Low_complexity Low_complexity 1 46 0 2 1164 394 283 66 46 chr3 76014159 76014355 -83585428 - Lx8 LINE L1 -1179 6294 6095 2 1164 867 334 75 50 chr3 76015561 76016263 -83583520 - Lx9 LINE L1 -27 7617 6898 2 1164 573 152 24 16 chr3 76016609 76016736 -83583047 - Lx2A LINE L1 -1 7007 6880 2 1164 36 53 0 0 chr3 76017282 76017339 -83582444 + AT_rich Low_complexity Low_complexity 1 57 0 2 1164 3038 75 2 0 chr3 76017455 76017853 -83581930 - L1_Mus2 LINE L1 -1 6565 6167 2 1164 489 34 0 0 chr3 76017856 76017915 -83581868 + (TG)n Simple_repeat Simple_repeat 2 60 0 3 1164 209 132 26 0 chr3 76017915 76017953 -83581830 + (TA)n Simple_repeat Simple_repeat 1 39 0 3 1164 28 0 0 0 chr3 76018093 76018121 -83581662 + AT_rich Low_complexity Low_complexity 1 28 0 3 1164 22 0 0 0 chr3 76018323 76018345 -83581438 + AT_rich Low_complexity Low_complexity 1 22 0 3 1164 29 0 0 0 chr3 76018701 76018730 -83581053 + AT_rich Low_complexity Low_complexity 1 29 0 3 1164 343 341 60 22 chr3 76019230 76019497 -83580286 - Lx8 LINE L1 -417 7056 6780 3 1164 342 0 0 0 chr3 76019558 76019596 -83580187 + (TC)n Simple_repeat Simple_repeat 2 39 0 3 1164 2972 41 3 0 chr3 76019775 76020143 -83579640 - L1Md_A LINE L1 -2 6580 6212 3 1164 962 47 8 0 chr3 76020515 76020643 -83579140 + (TG)n Simple_repeat Simple_repeat 2 130 0 3 1164 32 67 0 0 chr3 76020916 76020976 -83578807 + AT_rich Low_complexity Low_complexity 1 60 0 3 1164 1011 258 127 71 chr3 76021633 76021745 -83578038 - RLTR20C LTR ERVK 0 534 421 4 145 1091 69 44 0 chr3 76021745 76021905 -83577878 - L1Md_F2 LINE L1 -1 6581 6415 4 1165 1011 258 127 71 chr3 76021905 76022297 -83577486 - RLTR20C LTR ERVK -114 420 2 4 1165 185 348 67 43 chr3 76023437 76023647 -83576136 + L2 LINE L2 1980 2194 -1225 4 1165 201 175 0 0 chr3 76024025 76024065 -83575718 + (CATATA)n Simple_repeat Simple_repeat 6 45 0 4 1165 392 256 35 92 chr3 76024181 76024323 -83575460 - Lx4B LINE L1 -95 6963 6830 4 1165 284 235 0 0 chr3 76024323 76024391 -83575392 + (CAAG)n Simple_repeat Simple_repeat 1 68 0 4 1165 6164 190 22 8 chr3 76024391 76025732 -83574051 - Lx5 LINE L1 -194 6856 5488 4 1165 392 325 62 8 chr3 76026000 76026257 -83573526 + L1MA4 LINE L1 5653 5923 -377 4 1165 3618 70 0 11 chr3 76026587 76027064 -83572719 - L1_Mm LINE L1 -627 5256 4785 4 1165 24 0 0 0 chr3 76027316 76027340 -83572443 + AT_rich Low_complexity Low_complexity 1 24 0 4 1165 26 0 0 0 chr3 76027446 76027472 -83572311 + AT_rich Low_complexity Low_complexity 1 26 0 5 1165 21 0 0 0 chr3 76027806 76027827 -83571956 + AT_rich Low_complexity Low_complexity 1 21 0 5 1165 23 33 0 0 chr3 76029297 76029327 -83570456 + AT_rich Low_complexity Low_complexity 1 30 0 5 1165 589 188 92 15 chr3 76030550 76030745 -83569038 + Lx9 LINE L1 7431 7640 -4 5 1165 968 118 21 0 chr3 76030752 76030896 -83568887 + B1_Mus2 SINE Alu 1 147 0 5 1165 432 0 0 0 chr3 76030898 76030946 -83568837 + (TAA)n Simple_repeat Simple_repeat 2 49 0 5 1165 1023 140 67 0 chr3 76031183 76031361 -83568422 - B2_Mm2 SINE B2 -4 191 2 5 1165 915 328 75 3 chr3 76031430 76031763 -83568020 - MTEa LTR MaLR -2 377 21 5 1165 366 386 50 47 chr3 76032048 76032306 -83567477 + B4A SINE B4 27 285 -7 5 1165 195 167 0 0 chr3 76032360 76032402 -83567381 + CT-rich Low_complexity Low_complexity 1 42 0 5 1165 220 356 101 0 chr3 76032509 76032658 -83567125 + L4 LINE RTE 596 759 -1270 6 1165 26 30 0 0 chr3 76032904 76032937 -83566846 + AT_rich Low_complexity Low_complexity 1 33 0 6 1165 343 295 91 1 chr3 76034182 76034317 -83565466 + MTEa LTR MaLR 3 146 -233 6 1165 24 53 0 0 chr3 76034736 76034774 -83565009 + AT_rich Low_complexity Low_complexity 1 38 0 6 1165 861 301 125 25 chr3 76034878 76035317 -83564466 - RMER5 LTR ERV1 0 534 52 6 1165 737 267 117 106 chr3 76035401 76035769 -83564014 + MTE2a LTR MaLR 3 374 -5 6 1165 3020 43 0 0 chr3 76035916 76036288 -83563495 - L1Md_A LINE L1 -3 6579 6208 6 1165 1893 76 0 4 chr3 76036719 76036971 -83562812 - L1Md_A LINE L1 -455 6127 5877 6 1165 3241 84 34 6 chr3 76036971 76037437 -83562346 + L1_Mus1 LINE L1 6089 6567 0 6 1165 197 111 79 0 chr3 76037441 76037504 -83562279 + A-rich Low_complexity Low_complexity 2 69 0 6 1165 387 105 0 0 chr3 76037521 76037578 -83562205 + (T)n Simple_repeat Simple_repeat 1 57 0 6 1165 1141 68 0 0 chr3 76037578 76037725 -83562058 - B1_Mm SINE Alu 0 147 1 7 1165 5684 127 8 9 chr3 76038205 76039118 -83560665 - Lx3A LINE L1 -3 6978 6067 7 1165 505 298 70 22 chr3 76039497 76039854 -83559929 - L1M2 LINE L1 -1092 5051 4678 7 1165 965 334 58 12 chr3 76040013 76040425 -83559358 - Lx8 LINE L1 -258 7215 6785 7 1165 287 294 54 0 chr3 76040625 76040717 -83559066 + Lx8 LINE L1 6438 6534 -939 7 1165 308 364 8 0 chr3 76040795 76040913 -83558870 - Lx8 LINE L1 -1079 6394 6276 7 1165 372 337 91 38 chr3 76041004 76041269 -83558514 - L1MEf LINE L1 -4551 1649 1371 7 1165 39 88 0 0 chr3 76042649 76042751 -83557032 + AT_rich Low_complexity Low_complexity 1 102 0 7 1165 22 0 0 0 chr3 76044474 76044496 -83555287 + AT_rich Low_complexity Low_complexity 1 22 0 7 1165 246 192 0 0 chr3 76044501 76044553 -83555230 + (TGAA)n Simple_repeat Simple_repeat 3 54 0 7 1165 673 260 167 0 chr3 76044575 76044863 -83554920 - RCHARR1 DNA MER1_type -56 918 583 7 1165 1518 290 99 0 chr3 76045440 76045913 -83553870 - RCHARR1 DNA MER1_type -386 588 69 7 1165 6941 179 37 28 chr3 76046060 76047507 -83552276 - Lx2 LINE L1 -11 6986 5526 8 1165 399 309 0 16 chr3 76047510 76047635 -83552148 - Lx7 LINE L1 -892 6804 6682 8 1165 207 0 0 0 chr3 76048919 76048942 -83550841 + (TG)n Simple_repeat Simple_repeat 2 24 0 8 1165 414 274 53 0 chr3 76048963 76049058 -83550725 - RSINE1 SINE B4 -57 108 9 8 1165 22 56 0 0 chr3 76049567 76049603 -83550180 + AT_rich Low_complexity Low_complexity 1 36 0 8 1165 21 36 0 0 chr3 76049676 76049704 -83550079 + AT_rich Low_complexity Low_complexity 1 28 0 8 1165 1116 83 7 0 chr3 76049762 76049907 -83549876 + B1_Mus1 SINE Alu 1 146 -2 8 1165 1293 274 67 69 chr3 76050058 76050478 -83549305 - MTD LTR MaLR -14 405 1 8 1165 1283 37 0 0 chr3 76050497 76050660 -83549123 + L1Md_F2 LINE L1 6414 6576 -6 8 1165 290 297 8 0 chr3 76050950 76051070 -83548713 - L1M5 LINE L1 -309 5864 5742 8 1165 2034 150 29 3 chr3 76051275 76051622 -83548161 - Lx LINE L1 -6 6648 6293 9 1165 438 291 15 7 chr3 76051883 76052018 -83547765 - Lx5 LINE L1 -3 7047 6912 9 1165 1173 148 78 7 chr3 76052031 76052263 -83547520 - Lx5 LINE L1 -1026 6024 5746 9 1165 210 143 0 0 chr3 76052263 76052298 -83547485 + (TTTCC)n Simple_repeat Simple_repeat 3 37 0 9 1165 6472 191 19 19 chr3 76052339 76053682 -83546101 - L1_Mur2 LINE L1 -72 5805 4460 9 1165 648 87 0 0 chr3 76053682 76053774 -83546009 + (TTTTC)n Simple_repeat Simple_repeat 2 93 0 9 1165 1005 96 0 0 chr3 76053774 76053909 -83545874 - B1_Mus2 SINE Alu -12 135 1 9 1165 6472 191 19 19 chr3 76053909 76053970 -83545813 - L1_Mur2 LINE L1 -1418 4459 4401 9 1165 222 136 0 0 chr3 76054154 76054198 -83545585 + (CA)n Simple_repeat Simple_repeat 2 45 0 9 1165 558 0 0 0 chr3 76054198 76054260 -83545523 + (GA)n Simple_repeat Simple_repeat 2 63 0 9 1165 229 321 0 0 chr3 76054263 76054347 -83545436 + (CA)n Simple_repeat Simple_repeat 2 85 0 9 1165 514 318 10 35 chr3 76054444 76054612 -83545171 + B3A SINE B2 1 168 -30 1 1165 549 80 0 0 chr3 76054612 76054687 -83545096 + (CA)n Simple_repeat Simple_repeat 2 76 0 1 1165 514 318 10 35 chr3 76054687 76054720 -83545063 + B3A SINE B2 169 197 -1 1 1165 34049 101 18 13 chr3 76055846 76062061 -83537722 - L1Md_F2 LINE L1 -12 6570 318 1 1165 6601 123 19 24 chr3 76062084 76063522 -83536261 - Lx LINE L1 -25 6629 5210 1 1165 22 0 0 0 chr3 76063822 76063844 -83535939 + AT_rich Low_complexity Low_complexity 1 22 0 1 1165 944 86 14 0 chr3 76063974 76064113 -83535670 + (GAAA)n Simple_repeat Simple_repeat 4 144 0 1 1165 7309 79 21 1 chr3 76064396 76065596 -83534187 - L1Md_F2 LINE L1 -7 6575 5351 1 1165 739 237 160 43 chr3 76066132 76066388 -83533395 - Lx4B LINE L1 -5 7053 6768 1 1165 623 217 28 14 chr3 76066734 76066879 -83532904 - B1_Mus1 SINE Alu -1 147 1 1 1165 28 71 0 0 chr3 76067117 76067173 -83532610 + AT_rich Low_complexity Low_complexity 1 56 0 1 1165 1072 101 0 20 chr3 76069989 76070140 -83529643 + B1_Mus1 SINE Alu 1 148 0 1 1165 346 325 66 33 chr3 76070895 76071016 -83528767 + B1_Mur2 SINE Alu 4 128 -21 1 1165 309 51 0 0 chr3 76071023 76071062 -83528721 + (CAAAA)n Simple_repeat Simple_repeat 1 39 0 1 1165 23 0 0 0 chr3 76071163 76071186 -83528597 + AT_rich Low_complexity Low_complexity 1 23 0 1 1165 248 291 23 0 chr3 76072026 76072112 -83527671 - L1MA4 LINE L1 -4 6296 6209 1 1165 299 229 30 40 chr3 76072207 76072307 -83527476 - L1MA4 LINE L1 -381 5919 5821 1 1165 430 124 19 19 chr3 76072321 76072428 -83527355 + (TCTG)n Simple_repeat Simple_repeat 2 108 0 1 1165 228 330 9 9 chr3 76072442 76072558 -83527225 - L1MA4 LINE L1 -532 5765 5650 1 1165 23 0 0 0 chr3 76072875 76072898 -83526885 + AT_rich Low_complexity Low_complexity 1 23 0 1 1165 1592 26 16 0 chr3 76073022 76073211 -83526572 - B2_Mm1a SINE B2 0 193 2 1 1165 336 146 18 80 chr3 76074244 76074356 -83525427 - L1_Mus3 LINE L1 0 6638 6534 1 1165 251 319 5 5 chr3 76076060 76076174 -83523609 - RSINE1 SINE B4 -17 148 34 1 1165 217 167 0 20 chr3 76076714 76076763 -83523020 + A-rich Low_complexity Low_complexity 3 50 0 1 1165 23 33 0 0 chr3 76077114 76077144 -83522639 + AT_rich Low_complexity Low_complexity 1 30 0 1 1165 425 346 30 15 chr3 76077564 76077699 -83522084 + RSINE1 SINE B4 5 141 -24 1 1165 264 137 0 0 chr3 76077743 76077794 -83521989 + (CA)n Simple_repeat Simple_repeat 2 52 0 1 1165 223 375 11 11 chr3 76078110 76078199 -83521584 - B3A SINE B2 -27 171 83 1 1165 398 330 146 5 chr3 76078618 76078831 -83520952 - RLTR40 LTR ERVK -51 766 524 1 1165 248 273 43 57 chr3 76080324 76080464 -83519319 - Lx9 LINE L1 0 7644 7507 1 1165 288 0 0 0 chr3 76080488 76080520 -83519263 + (CA)n Simple_repeat Simple_repeat 1 32 0 1 1165 3231 239 49 12 chr3 76081357 76082957 -83516826 - Lx5 LINE L1 -1 7049 5351 1 1165 660 220 60 0 chr3 76082966 76083134 -83516649 - Lx5 LINE L1 -3195 2685 2508 1 1165 483 132 0 11 chr3 76083142 76083234 -83516549 - Lx2 LINE L1 -3 6994 6904 1 1165 2374 77 0 0 chr3 76083290 76083615 -83516168 - L1_Mur1 LINE L1 -3919 1967 1643 1 1165 928 233 34 8 chr3 76083609 76083936 -83515847 - Lx5 LINE L1 -6487 1241 907 1 1165 201 74 0 0 chr3 76084436 76084463 -83515320 + (CTTTG)n Simple_repeat Simple_repeat 2 28 0 1 1165 6556 33 0 9 chr3 76084798 76085590 -83514193 + L1Md_F2 LINE L1 5796 6580 -2 1 1165 708 12 0 0 chr3 76086226 76086307 -83513476 + (TC)n Simple_repeat Simple_repeat 1 81 0 1 1165 227 312 39 8 chr3 76087150 76087279 -83512504 + Lx2B LINE L1 6836 6968 -32 1 1165 405 0 0 0 chr3 76087280 76087325 -83512458 + (TAAA)n Simple_repeat Simple_repeat 1 45 0 1 1165 258 32 0 0 chr3 76087399 76087430 -83512353 + (CA)n Simple_repeat Simple_repeat 2 32 0 1 1165 23 0 0 0 chr3 76087437 76087460 -83512323 + AT_rich Low_complexity Low_complexity 1 23 0 1 1165 459 329 43 43 chr3 76087746 76088051 -83511732 + Lx8 LINE L1 6627 6931 -542 1 1165 267 31 0 0 chr3 76088412 76088444 -83511339 + (CA)n Simple_repeat Simple_repeat 2 33 0 1 1165 24 0 0 0 chr3 76090205 76090229 -83509554 + AT_rich Low_complexity Low_complexity 1 24 0 1 1165 21 0 0 0 chr3 76090373 76090394 -83509389 + AT_rich Low_complexity Low_complexity 1 21 0 1 1165 1533 260 27 11 chr3 76091351 76091717 -83508066 - Lx6 LINE L1 -27 7433 7062 1 1165 2333 227 70 9 chr3 76091713 76092403 -83507380 - L1_Mur3 LINE L1 -1158 4722 3991 1 1165 386 280 19 62 chr3 76092669 76092714 -83507069 - L1M2 LINE L1 -2950 3193 3152 1 1165 1424 250 9 87 chr3 76092714 76093152 -83506631 - MTB_Mm LTR MaLR 0 407 4 1 1165 386 280 19 62 chr3 76093152 76093266 -83506517 - L1M2 LINE L1 -2992 3151 3041 1 1165 27 0 0 0 chr3 76093268 76093295 -83506488 + AT_rich Low_complexity Low_complexity 1 27 0 1 1165 279 93 0 0 chr3 76093301 76093344 -83506439 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 1165 2759 156 26 12 chr3 76093515 76094008 -83505775 + Lx LINE L1 6154 6653 -1 1 1165 23 68 0 0 chr3 76094180 76094224 -83505559 + AT_rich Low_complexity Low_complexity 1 44 0 1 1165 29 47 0 0 chr3 76094302 76094345 -83505438 + AT_rich Low_complexity Low_complexity 1 43 0 1 1165 385 321 88 29 chr3 76094385 76094933 -83504850 + L1MA4 LINE L1 4149 4728 -1415 1 1165 307 314 45 101 chr3 76095313 76095378 -83504405 + L1MA4 LINE L1 5458 5517 -786 1 1165 6733 50 2 0 chr3 76095378 76096209 -83503574 + L1Md_F2 LINE L1 5742 6574 -8 1 1165 310 306 55 61 chr3 76096209 76096632 -83503151 + L1MA4 LINE L1 5518 5925 -231 1 1165 276 186 0 0 chr3 76096657 76096716 -83503067 + (TATATG)n Simple_repeat Simple_repeat 2 60 0 1 1165 24 67 0 0 chr3 76097428 76097473 -83502310 + AT_rich Low_complexity Low_complexity 1 45 0 1 1165 270 81 0 0 chr3 76097972 76098009 -83501774 + (TTA)n Simple_repeat Simple_repeat 3 39 0 1 1165 229 172 77 15 chr3 76098113 76098178 -83501605 + (TTTAA)n Simple_repeat Simple_repeat 2 70 0 1 1165 322 289 94 24 chr3 76098393 76098563 -83501220 + L1MEc LINE L1 91 272 -6128 1 1165 318 344 89 41 chr3 76098826 76099141 -83500642 + L1MEc LINE L1 509 838 -5562 1 1165 233 312 148 0 chr3 76099142 76099270 -83500513 + B1F2 SINE Alu 2 148 -1 1 1165 2445 104 3 24 chr3 76099406 76099779 -83500004 + Lx3A LINE L1 6601 6965 -16 1 1165 360 64 0 0 chr3 76099782 76099829 -83499954 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 1 1165 22 0 0 0 chr3 76099964 76099986 -83499797 + AT_rich Low_complexity Low_complexity 1 22 0 1 1165 30 59 0 0 chr3 76100239 76100290 -83499493 + AT_rich Low_complexity Low_complexity 1 51 0 1 1165 984 289 14 31 chr3 76100324 76100681 -83499102 - Lx9 LINE L1 -144 7500 7150 1 1165 30 0 0 0 chr3 76100709 76100739 -83499044 + AT_rich Low_complexity Low_complexity 1 30 0 1 1165 241 290 123 0 chr3 76100746 76100845 -83498938 + B3A SINE B2 43 154 -62 1 1165 414 0 0 0 chr3 76100927 76100973 -83498810 + (TG)n Simple_repeat Simple_repeat 1 46 0 1 1165 341 278 91 37 chr3 76101618 76101805 -83497978 - B3A SINE B2 0 198 2 1 1165 1559 289 49 4 chr3 76102109 76102560 -83497223 + Lx6 LINE L1 6978 7448 -12 1 1165 438 69 0 0 chr3 76102653 76102711 -83497072 + (TG)n Simple_repeat Simple_repeat 2 59 0 1 1165 429 302 0 0 chr3 76102755 76102851 -83496932 - RSINE1 SINE B4 -59 106 11 1 1165 351 0 0 0 chr3 76102977 76103016 -83496767 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 1165 4376 60 53 2 chr3 76103083 76103663 -83496120 - L1Md_F2 LINE L1 -2 6580 5971 1 1165 286 24 0 0 chr3 76103721 76103762 -83496021 - L1_Mus2 LINE L1 0 6566 6526 1 1165 3321 42 2 0 chr3 76103759 76104169 -83495614 - L1Md_F2 LINE L1 -500 6082 5672 1 1165 807 264 97 11 chr3 76104461 76104729 -83495054 + MTD LTR MaLR 3 293 -126 1 1165 702 324 73 48 chr3 76105242 76105903 -83493880 - HAL1 LINE L1 -975 1532 856 1 1165 407 194 10 0 chr3 76106638 76106741 -83493042 + (TA)n Simple_repeat Simple_repeat 2 105 0 1 1165 5806 84 47 12 chr3 76107462 76108307 -83491476 - L1_Mus2 LINE L1 -1 6565 5691 1 1165 685 193 22 29 chr3 76108302 76108441 -83491342 + L1_Mm LINE L1 5538 5675 -208 1 1165 616 287 52 67 chr3 76108448 76108997 -83490786 - L1_Mur2 LINE L1 -2399 3741 3186 1 1165 372 301 45 0 chr3 76109092 76109225 -83490558 - L1_Mur2 LINE L1 -2932 3211 3073 1 1165 268 284 16 39 chr3 76109293 76109421 -83490362 + L1M LINE L1 5296 5420 -924 1 1165 946 223 4 30 chr3 76110274 76110505 -83489278 - URR1B DNA MER1_type 0 225 1 1 1165 262 257 124 11 chr3 76110743 76110920 -83488863 + Lx9 LINE L1 7435 7631 -13 1 1165 1076 122 0 11 chr3 76110988 76111162 -83488621 - L1Md_F2 LINE L1 -12 6570 6399 1 1165 4905 92 6 4 chr3 76111177 76111862 -83487921 + L1_Mm LINE L1 5119 5804 -79 1 1165 21 0 0 0 chr3 76112332 76112353 -83487430 + AT_rich Low_complexity Low_complexity 1 21 0 1 1165 23 33 0 0 chr3 76112419 76112449 -83487334 + AT_rich Low_complexity Low_complexity 1 30 0 1 1165 302 333 39 0 chr3 76112558 76112660 -83487123 - PB1D10 SINE Alu -1 116 11 1 1165 1746 185 37 99 chr3 76113928 76114331 -83485452 - RLTR14 LTR ERV1 -2 380 3 1 1165 25 31 0 0 chr3 76114360 76114392 -83485391 + AT_rich Low_complexity Low_complexity 1 32 0 1 1165 4062 210 50 2 chr3 76114473 76115310 -83484473 - Lx2A1 LINE L1 -6 7002 6126 1 1165 3824 52 6 31 chr3 76115310 76115822 -83483961 - L1Md_F3 LINE L1 0 6584 6086 1 1165 1169 8 0 0 chr3 76115822 76115955 -83483828 + L1Md_F3 LINE L1 5948 6080 -504 1 1165 2937 174 28 0 chr3 76115951 76116487 -83483296 - Lx2A1 LINE L1 -856 6141 5591 1 1165 5481 181 20 6 chr3 76116494 76117554 -83482229 + Lx2B LINE L1 4525 5599 -287 1 1165 7791 34 14 3 chr3 76117604 76118554 -83481229 + L1Md_F3 LINE L1 5610 6569 -15 1 1165 22 0 0 0 chr3 76119415 76119437 -83480346 + AT_rich Low_complexity Low_complexity 1 22 0 1 1165 3177 248 80 27 chr3 76119771 76120327 -83479456 + Lx2B LINE L1 5860 6469 -507 1 1165 180 0 0 0 chr3 76120327 76120347 -83479436 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 1 1165 3177 193 51 13 chr3 76120347 76120860 -83478923 + Lx2B LINE L1 6470 6997 -3 1 1165 456 161 0 0 chr3 76121403 76121527 -83478256 + (TCTCTG)n Simple_repeat Simple_repeat 3 126 0 1 1165 321 172 0 0 chr3 76122040 76122098 -83477685 - Lx2 LINE L1 -1014 5983 5926 1 1165 361 177 76 0 chr3 76122496 76122575 -83477208 - MMETn-int LTR ERVK -376 4468 4384 1 1165 2057 151 0 14 chr3 76122582 76122932 -83476851 - Lx2A1 LINE L1 -1061 5947 5603 2 1165 421 258 62 60 chr3 76122961 76123143 -83476640 - MER57C2 LTR ERV1 -199 235 60 2 1165 4721 92 26 1 chr3 76123677 76123823 -83475960 - L1_Mus3 LINE L1 -380 6258 6114 2 1165 481 15 0 29 chr3 76123823 76123891 -83475892 + (TTTTG)n Simple_repeat Simple_repeat 2 67 0 2 1165 8852 102 23 8 chr3 76123891 76124713 -83475070 - L1_Mus3 LINE L1 -525 6113 5293 2 1165 2164 93 0 0 chr3 76124713 76125003 -83474780 - L1_Mus2 LINE L1 0 6566 6277 2 1165 8852 118 17 17 chr3 76125003 76125795 -83473988 - L1_Mus3 LINE L1 -591 5292 4482 2 1165 342 0 0 0 chr3 76127629 76127667 -83472116 + (TG)n Simple_repeat Simple_repeat 2 39 0 2 1165 225 317 184 16 chr3 76127672 76127797 -83471986 - B3 SINE B2 -40 176 31 2 1165 291 241 0 0 chr3 76130295 76130378 -83469405 + GA-rich Low_complexity Low_complexity 2 84 0 2 1165 963 104 0 12 chr3 76130400 76130566 -83469217 + L1_Mus4 LINE L1 6473 6636 0 2 1165 814 111 28 0 chr3 76130603 76130747 -83469036 + (GAAA)n Simple_repeat Simple_repeat 1 148 0 2 1165 471 18 0 0 chr3 76130748 76130804 -83468979 + (GGAAA)n Simple_repeat Simple_repeat 1 56 0 2 1165 192 77 0 0 chr3 76131740 76131766 -83468017 + (T)n Simple_repeat Simple_repeat 1 26 0 2 1165 721 163 34 0 chr3 76131778 76131925 -83467858 - Lx2 LINE L1 -1 6996 6845 2 1165 21 36 0 0 chr3 76132315 76132343 -83467440 + AT_rich Low_complexity Low_complexity 1 28 0 2 1165 2626 142 9 9 chr3 76132380 76132829 -83466954 - L1_Mm LINE L1 -955 4928 4480 2 1165 6762 130 15 17 chr3 76132842 76133988 -83465795 + Lx LINE L1 5508 6647 -7 2 1165 22 0 0 0 chr3 76134381 76134403 -83465380 + AT_rich Low_complexity Low_complexity 1 22 0 2 1165 532 424 9 40 chr3 76135484 76135813 -83463970 + Tigger7 DNA MER2_type 14 332 -2159 2 1165 469 312 42 16 chr3 76135851 76136043 -83463740 - RMER15 LTR ERVL -33 542 346 2 1165 311 302 70 0 chr3 76136133 76136262 -83463521 - RMER15 LTR ERVL -437 138 1 2 1165 1352 67 5 10 chr3 76136546 76136741 -83463042 + L1Md_F2 LINE L1 6388 6581 -1 2 1165 881 260 55 0 chr3 76136991 76137191 -83462592 + B3 SINE B2 6 216 0 2 1165 390 219 20 0 chr3 76137315 76137461 -83462322 + (TA)n Simple_repeat Simple_repeat 2 150 0 2 1165 261 106 42 21 chr3 76138910 76138958 -83460825 - Lx LINE L1 -910 6786 6738 2 1165 2280 130 8 26 chr3 76139030 76139418 -83460365 - Lx LINE L1 -6 6648 6268 2 1165 21 57 0 0 chr3 76142084 76142119 -83457664 + AT_rich Low_complexity Low_complexity 1 35 0 2 1165 470 288 89 90 chr3 76142352 76142697 -83457086 + ORR1E LTR MaLR 8 377 -17 2 1165 27 0 0 0 chr3 76144234 76144261 -83455522 + AT_rich Low_complexity Low_complexity 1 27 0 2 1165 2762 191 14 6 chr3 76144261 76144757 -83455026 - Lx4A LINE L1 0 7058 6559 2 1165 2549 155 41 4 chr3 76145987 76146447 -83453336 - L1_Mur2 LINE L1 -353 5524 5048 2 1165 7172 106 6 10 chr3 76146478 76147532 -83452251 + L1_Mus4 LINE L1 5587 6635 -1 2 1165 1585 150 15 0 chr3 76147578 76147845 -83451938 - ORR1A4 LTR MaLR -56 273 3 2 1165 1563 153 249 17 chr3 76147847 76148260 -83451523 - ORR1A4-int LTR MaLR 0 1509 1001 2 1165 2829 80 31 5 chr3 76148304 76148694 -83451089 + L1_Mus2 LINE L1 6158 6557 -9 2 1165 213 139 0 0 chr3 76148988 76149031 -83450752 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 2 1165 234 350 146 7 chr3 76149496 76149640 -83450143 - MLT1J1 LTR MaLR -240 204 41 2 1165 5995 219 26 28 chr3 76151567 76151879 -83447904 - Lx2B LINE L1 -4 6996 6680 2 1165 962 103 13 27 chr3 76151879 76152014 -83447769 + B1_Mur4 SINE Alu 2 137 -13 2 1165 513 0 0 0 chr3 76152014 76152071 -83447712 + (CAAAA)n Simple_repeat Simple_repeat 1 57 0 2 1165 962 103 13 27 chr3 76152071 76152085 -83447698 + B1_Mur4 SINE Alu 138 149 -1 2 145 8431 202 31 63 chr3 76152085 76153416 -83446367 - Lx2B LINE L1 -321 6679 5371 2 1166 336 24 0 0 chr3 76153416 76153457 -83446326 + (TCTCTG)n Simple_repeat Simple_repeat 2 42 0 2 1166 8431 176 39 116 chr3 76153457 76153641 -83446142 - Lx2B LINE L1 -507 5370 5353 2 1166 1326 103 15 0 chr3 76153641 76153845 -83445938 + L1_Mus2 LINE L1 6360 6566 0 2 1166 8431 176 39 116 chr3 76153845 76155512 -83444271 - Lx2B LINE L1 -525 5352 3683 2 1166 999 323 77 24 chr3 76155693 76156200 -83443583 - RMER5 LTR ERV1 0 534 1 2 1166 212 0 36 0 chr3 76156238 76156266 -83443517 + (TTG)n Simple_repeat Simple_repeat 2 30 0 2 1166 438 20 0 0 chr3 76157172 76157223 -83442560 + (TTA)n Simple_repeat Simple_repeat 2 52 0 2 1166 256 358 37 0 chr3 76157665 76157746 -83442037 - ID SINE ID -139 85 2 2 1166 21 36 0 0 chr3 76157749 76157777 -83442006 + AT_rich Low_complexity Low_complexity 1 28 0 2 1166 230 283 6 0 chr3 76157805 76157964 -83441819 + (TG)n Simple_repeat Simple_repeat 2 161 0 2 1166 598 219 0 9 chr3 76158173 76158288 -83441495 + B1_Mur2 SINE Alu 31 144 -5 2 1166 189 0 0 0 chr3 76158323 76158344 -83441439 + (CA)n Simple_repeat Simple_repeat 2 22 0 2 1166 27 0 0 0 chr3 76159629 76159656 -83440127 + AT_rich Low_complexity Low_complexity 1 27 0 2 1166 285 210 27 12 chr3 76160394 76160477 -83439306 + L1MA4 LINE L1 6188 6285 -15 2 1166 25 0 0 0 chr3 76160489 76160514 -83439269 + AT_rich Low_complexity Low_complexity 1 25 0 2 1166 30 0 0 0 chr3 76161187 76161217 -83438566 + AT_rich Low_complexity Low_complexity 1 30 0 2 1166 514 290 69 15 chr3 76162902 76163105 -83436678 - B3 SINE B2 -2 214 1 2 1166 339 85 0 0 chr3 76163514 76163561 -83436222 + (CA)n Simple_repeat Simple_repeat 1 47 0 2 1166 8110 156 42 3 chr3 76163600 76165509 -83434274 - Lx2B LINE L1 -3 6997 5003 2 1166 2303 121 65 8 chr3 76165577 76165959 -83433824 - Lx2 LINE L1 -1 6996 6593 2 1166 319 137 26 40 chr3 76165959 76166035 -83433748 + Lx2 LINE L1 6923 6997 0 2 1166 24 67 0 0 chr3 76166036 76166081 -83433702 + AT_rich Low_complexity Low_complexity 1 45 0 2 1166 923 155 8 50 chr3 76166456 76166789 -83432994 - RLTR9D LTR ERVK -13 390 1 2 1166 450 0 0 0 chr3 76166919 76166969 -83432814 + (TA)n Simple_repeat Simple_repeat 2 51 0 2 1166 299 354 67 34 chr3 76167815 76167964 -83431819 + RSINE1 SINE B4 4 157 -8 2 1166 6228 113 16 13 chr3 76168421 76169425 -83430358 + L1_Mur1 LINE L1 3647 4653 -1233 2 1166 2148 120 5 142 chr3 76169423 76169860 -83429923 - L1_Mus4 LINE L1 -136 6500 6124 2 1166 2077 98 0 10 chr3 76169850 76170149 -83429634 + L1_Mur1 LINE L1 4658 4953 -933 2 1166 3346 50 0 0 chr3 76170149 76170566 -83429217 + L1Md_F2 LINE L1 6163 6579 -3 2 1166 881 301 9 22 chr3 76170566 76170605 -83429178 + L1M2 LINE L1 4977 5011 -1132 2 1166 372 22 0 0 chr3 76171395 76171440 -83428343 + (CA)n Simple_repeat Simple_repeat 1 45 0 2 1166 455 361 57 47 chr3 76172258 76172493 -83427290 - Lx8 LINE L1 -409 7064 6804 2 1166 450 0 0 0 chr3 76172501 76172551 -83427232 + (TG)n Simple_repeat Simple_repeat 1 50 0 2 1166 324 0 0 0 chr3 76172551 76172586 -83427197 + (GA)n Simple_repeat Simple_repeat 1 36 0 2 1166 25 0 0 0 chr3 76172989 76173014 -83426769 + AT_rich Low_complexity Low_complexity 1 25 0 2 1166 22 35 0 0 chr3 76175181 76175210 -83424573 + AT_rich Low_complexity Low_complexity 1 29 0 2 1166 216 0 0 0 chr3 76175531 76175555 -83424228 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 2 1166 1090 62 0 7 chr3 76175555 76175701 -83424082 - B1_Mm SINE Alu -2 145 1 2 1166 363 277 10 21 chr3 76175920 76176016 -83423767 - MTD LTR MaLR -218 201 107 2 1166 2542 250 64 77 chr3 76176060 76176996 -83422787 - Lx7 LINE L1 -1169 6527 5595 2 1166 567 0 0 0 chr3 76176996 76177059 -83422724 + (TA)n Simple_repeat Simple_repeat 2 64 0 2 1166 1998 252 74 25 chr3 76177059 76177441 -83422342 - Lx7 LINE L1 -286 5594 5192 2 1166 323 221 0 0 chr3 76177527 76177595 -83422188 + L1_Mur3 LINE L1 2742 2809 -3071 2 1166 1181 252 78 20 chr3 76177603 76177904 -83421879 + L1_Mur3 LINE L1 3976 4289 -1591 2 1166 399 21 0 0 chr3 76177904 76177952 -83421831 + (CA)n Simple_repeat Simple_repeat 2 49 0 2 1166 1181 252 78 20 chr3 76177952 76178088 -83421695 + L1_Mur3 LINE L1 4290 4438 -1442 2 1166 5070 243 68 16 chr3 76178123 76180219 -83419564 - L1_Mur3 LINE L1 -3152 2728 522 2 1166 577 283 144 32 chr3 76180290 76180699 -83419084 - L1MA4A LINE L1 -454 5849 5395 2 1166 460 255 127 68 chr3 76180780 76181150 -83418633 - L1_Rod LINE L1 -628 5219 4828 2 1166 4437 91 20 0 chr3 76181519 76182162 -83417621 - Lx3_Mus LINE L1 -1094 5915 5261 2 1166 963 280 35 44 chr3 76182167 76182485 -83417298 - Lx8 LINE L1 -572 6901 6587 2 1166 432 37 0 0 chr3 76182519 76182573 -83417210 + (GA)n Simple_repeat Simple_repeat 2 55 0 2 1166 783 309 58 44 chr3 76182596 76183236 -83416547 + L1MA4 LINE L1 5388 5994 -1479 2 1166 291 219 31 0 chr3 76183385 76183449 -83416334 + L1MA4 LINE L1 6299 6364 -1109 2 1166 415 284 171 29 chr3 76183456 76183788 -83415995 - L1_Mur3 LINE L1 -1951 4195 3780 2 1166 234 0 0 0 chr3 76183834 76183860 -83415923 + (TTAGG)n Simple_repeat Simple_repeat 4 29 0 2 1166 568 311 48 11 chr3 76183888 76184243 -83415540 - L1_Rod LINE L1 -2958 2889 2522 2 1166 30 27 0 0 chr3 76184732 76184769 -83415014 + AT_rich Low_complexity Low_complexity 1 37 0 2 1166 275 232 0 95 chr3 76184902 76184997 -83414786 + MT2B2 LTR ERVL 155 240 -344 2 1166 461 270 0 35 chr3 76184949 76185064 -83414719 + B1F2 SINE Alu 38 148 -1 2 1166 288 0 0 0 chr3 76185237 76185269 -83414514 + (CA)n Simple_repeat Simple_repeat 2 33 0 2 1166 4816 106 18 1 chr3 76185352 76186059 -83413724 - L1_Mus4 LINE L1 -5 6631 5913 2 1166 1224 238 134 64 chr3 76186494 76187016 -83412767 - RLTR31_Mm LTR ERVK 0 561 1 2 1166 2050 227 17 47 chr3 76187017 76187594 -83412189 - RMER3D-int LTR ERVK -1 2841 2282 2 1166 751 172 21 67 chr3 76187591 76187784 -83411999 - RMER3D-int LTR ERVK -734 2108 1925 2 1166 923 166 19 28 chr3 76187799 76188010 -83411773 - RMER3D-int LTR ERVK -978 1864 1656 2 1166 3435 70 0 0 chr3 76188010 76188604 -83411179 - L1_Mus3 LINE L1 -585 5981 5388 2 1166 3976 111 16 13 chr3 76188604 76189216 -83410567 + L1_Mus3 LINE L1 6025 6638 0 2 1166 1223 191 26 108 chr3 76189227 76189609 -83410174 - RMER3D-int LTR ERVK -1175 1667 1382 2 1166 1744 179 39 19 chr3 76189604 76189968 -83409815 - RMER3D-int LTR ERVK -1458 1384 1014 2 1166 1483 225 77 57 chr3 76189989 76190767 -83409016 - RMER3D-int LTR ERVK -1780 1062 8 2 1166 3361 130 28 4 chr3 76192066 76192607 -83407176 - Lx2 LINE L1 -14 6983 6430 2 1166 24 53 0 0 chr3 76193118 76193156 -83406627 + AT_rich Low_complexity Low_complexity 1 38 0 2 1166 633 296 54 10 chr3 76194053 76194258 -83405525 + B3 SINE B2 3 216 0 2 1166 211 114 22 22 chr3 76194371 76194416 -83405367 + (TAA)n Simple_repeat Simple_repeat 1 45 0 2 1166 261 0 0 0 chr3 76194626 76194655 -83405128 + (A)n Simple_repeat Simple_repeat 1 29 0 2 1166 366 80 0 0 chr3 76195030 76195080 -83404703 + (TGAA)n Simple_repeat Simple_repeat 1 50 0 2 1166 235 282 26 0 chr3 76195159 76195237 -83404546 + (TG)n Simple_repeat Simple_repeat 1 80 0 2 1166 220 330 167 30 chr3 76195286 76195520 -83404263 - B4A SINE B4 -14 278 13 3 1166 21 0 0 0 chr3 76195859 76195880 -83403903 + AT_rich Low_complexity Low_complexity 1 21 0 3 1166 890 304 107 9 chr3 76196669 76197014 -83402769 - MTE2b LTR MaLR 0 379 1 3 1166 288 262 22 58 chr3 76197652 76197790 -83401993 - L1M2 LINE L1 -2522 3621 3489 3 1166 300 266 58 94 chr3 76197839 76198063 -83401720 - L1M2 LINE L1 -2754 3389 3174 3 1166 4621 81 6 6 chr3 76198065 76198700 -83401083 - L1Md_F2 LINE L1 0 6582 5948 3 1166 5388 74 5 184 chr3 76198700 76199634 -83400149 - L1_Mm LINE L1 -1150 4733 3993 3 1166 2749 80 0 0 chr3 76199634 76200009 -83399774 - L1Md_T LINE L1 -1 6581 6207 3 1166 5388 74 5 184 chr3 76200009 76200183 -83399600 - L1_Mm LINE L1 -1891 3992 3823 3 1166 8080 88 11 0 chr3 76200160 76201288 -83398495 + L1_Mm LINE L1 2689 3828 -2055 3 1166 238 265 35 24 chr3 76201334 76201419 -83398364 - L1_Rod LINE L1 -2829 3018 2933 3 1166 7442 68 12 4 chr3 76201429 76202582 -83397201 - L1Md_F2 LINE L1 0 6582 5420 3 1166 6071 207 124 67 chr3 76202605 76207189 -83392594 - Lx5 LINE L1 -53 6997 2050 3 1166 369 109 0 0 chr3 76207189 76207253 -83392530 + (TG)n Simple_repeat Simple_repeat 2 65 0 3 1166 6071 173 93 115 chr3 76207253 76207366 -83392417 - Lx5 LINE L1 -3828 2049 1905 3 1166 267 104 0 0 chr3 76207468 76207516 -83392267 + (T)n Simple_repeat Simple_repeat 1 48 0 3 1166 1025 110 0 0 chr3 76207516 76207662 -83392121 - B1_Mus2 SINE Alu 0 147 2 3 1166 441 342 22 39 chr3 76207662 76208021 -83391762 - L1_Mur3 LINE L1 -2967 2913 2561 3 1166 429 19 0 0 chr3 76208025 76208072 -83391711 + (TA)n Simple_repeat Simple_repeat 1 47 0 3 1166 503 107 12 0 chr3 76208072 76208156 -83391627 + (TG)n Simple_repeat Simple_repeat 2 86 0 3 1166 474 378 24 10 chr3 76208217 76208423 -83391360 + Lx8 LINE L1 7121 7329 -144 3 1166 411 56 0 0 chr3 76208424 76208478 -83391305 + (TAAA)n Simple_repeat Simple_repeat 4 57 0 3 1166 249 222 0 0 chr3 76211566 76211629 -83388154 + CT-rich Low_complexity Low_complexity 1 63 0 3 1166 920 254 77 51 chr3 76211634 76212049 -83387734 - Lx7 LINE L1 -5 7691 7266 3 1166 1133 118 46 5 chr3 76212481 76212676 -83387107 - L1_Mus3 LINE L1 -10 6628 6426 3 1166 348 339 45 64 chr3 76213710 76213912 -83385871 - B3A SINE B2 0 198 1 3 1166 317 68 13 52 chr3 76214040 76214117 -83385666 + (TTA)n Simple_repeat Simple_repeat 2 75 0 3 1166 21 0 0 0 chr3 76214293 76214314 -83385469 + AT_rich Low_complexity Low_complexity 1 21 0 3 1166 21 71 0 0 chr3 76214635 76214677 -83385106 + AT_rich Low_complexity Low_complexity 1 42 0 3 1166 4504 280 77 34 chr3 76214977 76216488 -83383295 - Lx6 LINE L1 -1 7459 5884 3 1166 22 70 0 0 chr3 76217254 76217297 -83382486 + AT_rich Low_complexity Low_complexity 1 43 0 3 1166 235 396 35 6 chr3 76217557 76217727 -83382056 + MIR SINE MIR 72 246 -16 3 1166 42 57 0 0 chr3 76218347 76218417 -83381366 + AT_rich Low_complexity Low_complexity 1 70 0 3 1166 324 0 0 0 chr3 76222386 76222422 -83377361 + (CA)n Simple_repeat Simple_repeat 1 36 0 3 1166 311 315 11 0 chr3 76222554 76222646 -83377137 + MTE2b LTR MaLR 5 97 -282 3 1166 283 338 20 61 chr3 76222660 76222808 -83376975 + MTE2b LTR MaLR 73 214 -165 3 1166 348 43 0 0 chr3 76222825 76222871 -83376912 + (TCCC)n Simple_repeat Simple_repeat 4 49 0 3 1166 313 305 68 30 chr3 76222874 76223006 -83376777 - HAL1-3A_ME LINE L1 -740 2118 1982 3 1166 337 324 21 49 chr3 76223076 76223219 -83376564 - B4A SINE B4 -150 142 4 3 1166 297 51 0 0 chr3 76223289 76223328 -83376455 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 3 1166 543 331 17 17 chr3 76223452 76223630 -83376153 + B3 SINE B2 9 186 -30 3 1166 197 83 28 0 chr3 76223637 76223673 -83376110 + (TA)n Simple_repeat Simple_repeat 2 38 0 3 1166 243 125 0 0 chr3 76224648 76224688 -83375095 + (TG)n Simple_repeat Simple_repeat 1 40 0 3 1166 268 304 128 0 chr3 76224968 76225070 -83374713 - RSINE1 SINE B4 -42 123 9 3 1166 3147 65 7 5 chr3 76225079 76225499 -83374284 - BGLII LTR ERVK 0 421 1 3 1166 21 0 0 0 chr3 76225504 76225525 -83374258 + AT_rich Low_complexity Low_complexity 1 21 0 3 1166 210 37 0 0 chr3 76225742 76225769 -83374014 + (AATAG)n Simple_repeat Simple_repeat 4 30 0 3 1166 666 296 71 121 chr3 76226298 76227344 -83372439 - L1M2 LINE L1 -1817 4326 3358 3 1166 1036 116 0 0 chr3 76227344 76227490 -83372293 - B1_Mus1 SINE Alu 0 148 3 3 1166 666 296 71 121 chr3 76227490 76227928 -83371855 - L1M2 LINE L1 -2786 3357 2916 3 1166 1393 186 77 39 chr3 76228073 76228500 -83371283 - Lx LINE L1 -6 6648 6131 3 1166 364 250 127 6 chr3 76228554 76228719 -83371064 - L1M2 LINE L1 -3464 2679 2495 3 1166 329 291 0 0 chr3 76228912 76228998 -83370785 + MTD LTR MaLR 18 103 -316 3 1166 4543 187 28 27 chr3 76228990 76229847 -83369936 - RMER13B LTR ERVK -50 858 1 3 1166 5919 124 49 31 chr3 76229847 76230865 -83368918 - Lx3A LINE L1 -358 6623 5588 3 1166 22 70 0 0 chr3 76233489 76233532 -83366251 + AT_rich Low_complexity Low_complexity 1 43 0 3 1166 306 0 0 0 chr3 76234560 76234594 -83365189 + (TG)n Simple_repeat Simple_repeat 1 34 0 3 1166 495 0 0 0 chr3 76234594 76234648 -83365135 + (GA)n Simple_repeat Simple_repeat 1 55 0 3 1166 292 288 96 64 chr3 76234739 76234895 -83364888 + B2_Mm2 SINE B2 3 163 -32 3 1166 22 35 0 0 chr3 76235282 76235311 -83364472 + AT_rich Low_complexity Low_complexity 1 29 0 3 1166 210 37 0 0 chr3 76235612 76235639 -83364144 + (TG)n Simple_repeat Simple_repeat 2 28 0 3 1166 411 21 0 0 chr3 76235648 76235696 -83364087 + (TTTA)n Simple_repeat Simple_repeat 2 49 0 3 1166 917 40 0 8 chr3 76235720 76235847 -83363936 - L1Md_T LINE L1 0 6582 6457 3 1166 25 0 0 0 chr3 76236219 76236244 -83363539 + AT_rich Low_complexity Low_complexity 1 25 0 3 1166 4602 82 23 0 chr3 76236599 76237218 -83362565 - L1_Mus1 LINE L1 -1 6566 5934 3 1166 1523 84 0 0 chr3 76237218 76237420 -83362363 + L1_Mus1 LINE L1 5733 5934 -633 3 1166 204 40 0 0 chr3 76237725 76237750 -83362033 + (TTTTTA)n Simple_repeat Simple_repeat 6 30 0 3 1166 423 0 0 0 chr3 76238242 76238289 -83361494 + (TC)n Simple_repeat Simple_repeat 2 48 0 3 1166 243 0 0 0 chr3 76238289 76238315 -83361468 + (TG)n Simple_repeat Simple_repeat 2 28 0 3 1166 848 107 25 12 chr3 76238336 76238497 -83361286 + (TTTC)n Simple_repeat Simple_repeat 4 166 0 3 1166 269 116 0 23 chr3 76238497 76238541 -83361242 + (TCTCCC)n Simple_repeat Simple_repeat 3 45 0 3 1166 723 343 67 25 chr3 76239660 76240059 -83359724 - MTD LTR MaLR -5 416 1 3 1166 231 173 0 0 chr3 76240607 76240659 -83359124 + CT-rich Low_complexity Low_complexity 3 54 0 3 1166 321 141 0 0 chr3 76240958 76241029 -83358754 + (TC)n Simple_repeat Simple_repeat 2 72 0 3 1166 342 0 0 0 chr3 76241187 76241225 -83358558 + (TA)n Simple_repeat Simple_repeat 2 39 0 3 1166 26 64 0 0 chr3 76241780 76241827 -83357956 + AT_rich Low_complexity Low_complexity 1 47 0 3 1166 21 0 0 0 chr3 76242081 76242102 -83357681 + AT_rich Low_complexity Low_complexity 1 21 0 3 1166 7971 39 0 0 chr3 76242785 76244174 -83355609 - L1Md_T LINE L1 0 6582 5224 3 1166 229 223 19 46 chr3 76244312 76244420 -83355363 + (TTTA)n Simple_repeat Simple_repeat 3 107 0 3 1166 1059 97 7 0 chr3 76244420 76244565 -83355218 - B1_Mus1 SINE Alu 0 148 3 3 1166 924 71 7 21 chr3 76244566 76244710 -83355073 + (TTTTC)n Simple_repeat Simple_repeat 5 146 0 3 1166 1759 57 136 20 chr3 76244712 76244963 -83354820 - L1_Mus1 LINE L1 -1 6566 6287 3 1166 1484 127 9 4 chr3 76244965 76245194 -83354589 - L1_Mus3 LINE L1 -80 6558 6329 3 1166 1768 156 41 38 chr3 76249591 76249958 -83349825 - RLTR9A LTR ERVK 0 368 1 3 1166 23 0 0 0 chr3 76250497 76250520 -83349263 + AT_rich Low_complexity Low_complexity 1 23 0 3 1166 341 377 39 78 chr3 76250520 76250750 -83349033 - ID_B1 SINE B4 -1 223 3 3 1166 288 102 0 0 chr3 76250901 76250950 -83348833 + (CAGAGA)n Simple_repeat Simple_repeat 5 53 0 3 1166 233 390 24 16 chr3 76251065 76251190 -83348593 - B4A SINE B4 -149 143 18 3 1166 217 75 50 0 chr3 76253368 76253408 -83346375 + (TTC)n Simple_repeat Simple_repeat 2 43 0 3 1166 276 100 0 0 chr3 76253441 76253481 -83346302 + (TTTA)n Simple_repeat Simple_repeat 1 40 0 3 1166 1765 128 0 25 chr3 76253499 76253780 -83346003 - Lx3A LINE L1 -75 6906 6633 3 1166 181 0 69 0 chr3 76254226 76254255 -83345528 + (TCTA)n Simple_repeat Simple_repeat 2 32 0 3 1166 347 335 63 37 chr3 76254437 76254626 -83345157 + L1MB5 LINE L1 3889 4082 -2064 3 1166 22 0 0 0 chr3 76255012 76255034 -83344749 + AT_rich Low_complexity Low_complexity 1 22 0 3 1166 1031 89 0 7 chr3 76255043 76255180 -83344603 + B1_Mus1 SINE Alu 3 138 -10 3 1166 477 0 0 0 chr3 76255180 76255233 -83344550 + (CAA)n Simple_repeat Simple_repeat 2 54 0 3 1166 7244 115 23 10 chr3 76255304 76256825 -83342958 + Lx LINE L1 5105 6642 -12 3 1166 1077 140 0 0 chr3 76256844 76257022 -83342761 + (GAAA)n Simple_repeat Simple_repeat 2 179 0 3 1166 4487 89 5 22 chr3 76257285 76257954 -83341829 - L1Md_F2 LINE L1 0 6582 5926 3 1166 680 280 118 21 chr3 76258047 76258570 -83341213 + L1MB5 LINE L1 5307 5876 -303 3 1166 332 296 68 14 chr3 76258604 76258823 -83340960 + L1MB5 LINE L1 5926 6156 -18 3 1166 26 0 0 0 chr3 76259863 76259889 -83339894 + AT_rich Low_complexity Low_complexity 1 26 0 3 1166 261 148 37 0 chr3 76260047 76260128 -83339655 + GA-rich Low_complexity Low_complexity 1 84 0 3 1166 435 216 0 18 chr3 76260304 76260474 -83339309 + (TA)n Simple_repeat Simple_repeat 1 167 0 3 1166 357 336 62 14 chr3 76260632 76260777 -83339006 - Lx8 LINE L1 -151 7322 7171 3 1166 887 151 183 36 chr3 76261583 76261884 -83337899 + RLTR15 LTR ERVK 1 345 -14 3 1166 280 244 33 44 chr3 76262465 76262555 -83337228 - RLTR12A LTR ERVK -441 127 39 3 1166 25 31 0 0 chr3 76262579 76262611 -83337172 + AT_rich Low_complexity Low_complexity 1 32 0 3 1166 537 121 0 0 chr3 76262691 76262774 -83337009 + (TTA)n Simple_repeat Simple_repeat 1 83 0 3 1166 1050 72 0 55 chr3 76262774 76262920 -83336863 - B1_Mus1 SINE Alu -9 139 2 3 1166 607 345 31 0 chr3 76262951 76263145 -83336638 - B3 SINE B2 -2 214 15 4 1166 412 329 7 7 chr3 76263736 76263880 -83335903 + B1_Mur2 SINE Alu 3 146 -3 4 1166 234 333 64 36 chr3 76264179 76264319 -83335464 + MIRb SINE MIR 52 195 -73 4 1166 5199 44 20 0 chr3 76264745 76265381 -83334402 + L1Md_F2 LINE L1 5932 6580 -2 4 1166 1813 143 11 86 chr3 76266307 76266688 -83333095 - ORR1B1 LTR MaLR -33 361 39 4 1166 902 323 95 22 chr3 76266707 76267077 -83332706 + MTD LTR MaLR 21 417 -2 4 1166 2818 196 54 28 chr3 76267414 76268085 -83331698 - RMER6C LTR ERVK -2 688 1 4 1166 2650 192 36 40 chr3 76268202 76268808 -83330975 - MYSERV6-int LTR ERVK -6478 2481 1878 4 1166 325 308 28 107 chr3 76270250 76270428 -83329355 - MER67D LTR ERV1 -185 329 166 4 1166 1446 130 89 239 chr3 76270432 76270938 -83328845 - RLTR23 LTR ERV1 0 430 1 4 1166 262 270 144 59 chr3 76271100 76271218 -83328565 - MER67D LTR ERV1 -386 128 1 4 1166 454 264 29 72 chr3 76272949 76273088 -83326695 - MTEb LTR MaLR -4 375 243 4 1166 501 141 0 0 chr3 76273235 76273320 -83326463 + (TCCC)n Simple_repeat Simple_repeat 4 88 0 4 1166 922 121 7 0 chr3 76273987 76274127 -83325656 + B1_Mus1 SINE Alu 2 142 -6 4 1166 826 169 6 6 chr3 76274127 76274294 -83325489 + GA-rich Low_complexity Low_complexity 1 167 0 4 1166 360 321 76 28 chr3 76274294 76274438 -83325345 + B3A SINE B2 27 177 -21 4 1166 22 35 0 0 chr3 76274570 76274599 -83325184 + AT_rich Low_complexity Low_complexity 1 29 0 4 1166 22 0 0 0 chr3 76274797 76274819 -83324964 + AT_rich Low_complexity Low_complexity 1 22 0 4 1166 21 0 0 0 chr3 76275079 76275100 -83324683 + AT_rich Low_complexity Low_complexity 1 21 0 4 1166 28096 86 9 8 chr3 76275159 76281297 -83318486 - L1Md_F2 LINE L1 -19 6563 421 4 1166 1624 265 13 10 chr3 76281481 76281878 -83317905 + Lx6 LINE L1 7063 7460 0 4 1166 342 67 0 0 chr3 76281887 76281932 -83317851 + (TG)n Simple_repeat Simple_repeat 2 46 0 4 1166 488 339 82 57 chr3 76281943 76282057 -83317726 - B4A SINE B4 -12 280 159 4 1166 2948 184 6 4 chr3 76282057 76282581 -83317202 - RLTR12B LTR ERVK 0 528 4 4 1166 488 339 82 57 chr3 76282581 76282710 -83317073 - B4A SINE B4 -134 158 31 4 1166 268 333 60 0 chr3 76283029 76283113 -83316670 - PB1D10 SINE Alu -2 115 27 4 1166 462 36 0 0 chr3 76283389 76283445 -83316338 + (CA)n Simple_repeat Simple_repeat 1 56 0 4 1167 252 226 0 0 chr3 76284403 76284465 -83315318 + (TA)n Simple_repeat Simple_repeat 2 63 0 4 1167 339 136 0 0 chr3 76286752 76286811 -83312972 + (TG)n Simple_repeat Simple_repeat 2 60 0 4 1167 23 0 0 0 chr3 76287279 76287302 -83312481 + AT_rich Low_complexity Low_complexity 1 23 0 4 1167 985 307 121 36 chr3 76287304 76287422 -83312361 - Lx8 LINE L1 -8 7465 7339 4 1167 369 0 0 0 chr3 76287422 76287463 -83312320 + (CA)n Simple_repeat Simple_repeat 2 42 0 4 1167 985 307 121 36 chr3 76287463 76288033 -83311750 - Lx8 LINE L1 -135 7338 6720 4 1167 336 268 12 35 chr3 76288112 76288186 -83311597 + B1_Mus2 SINE Alu 1 72 -75 4 1167 3288 207 21 141 chr3 76288186 76289017 -83310766 + RLTR25A LTR ERVK 2 735 -368 4 1167 254 0 83 0 chr3 76289017 76289053 -83310730 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 4 1167 351 0 0 0 chr3 76289057 76289096 -83310687 + (TG)n Simple_repeat Simple_repeat 1 39 0 4 1167 3288 207 21 141 chr3 76289096 76289264 -83310519 + RLTR25A LTR ERVK 736 880 -223 4 1167 747 224 106 76 chr3 76289402 76289481 -83310302 + RLTR25B LTR ERVK 746 824 -204 4 1167 207 0 0 0 chr3 76289481 76289504 -83310279 + (CA)n Simple_repeat Simple_repeat 2 24 0 4 1167 747 224 106 76 chr3 76289504 76289699 -83310084 + RLTR25B LTR ERVK 825 1028 0 4 1167 24 0 0 0 chr3 76290844 76290868 -83308915 + AT_rich Low_complexity Low_complexity 1 24 0 4 1167 238 140 66 66 chr3 76292559 76292620 -83307163 - Charlie24 DNA MER1_type -2037 413 353 4 1167 988 243 92 13 chr3 76292624 76292997 -83306786 - L1MB1 LINE L1 -3 6168 5727 4 1167 1866 164 57 50 chr3 76292997 76293401 -83306382 - MTB_Mm LTR MaLR 0 407 1 4 1167 737 286 149 25 chr3 76293401 76293641 -83306142 - L1MB1 LINE L1 -445 5726 5476 4 1167 274 330 10 40 chr3 76293755 76293856 -83305927 - RSINE1 SINE B4 -11 154 57 4 1167 233 57 0 28 chr3 76294023 76294059 -83305724 + (TTA)n Simple_repeat Simple_repeat 3 37 0 4 1167 282 308 89 39 chr3 76294080 76294283 -83305500 + L1M3 LINE L1 3927 4141 -2005 4 1167 1186 206 17 44 chr3 76294853 76295148 -83304635 + MYSERV-int LTR ERVK 6264 6550 0 4 1167 811 252 103 53 chr3 76295287 76295530 -83304253 + RLTR12B LTR ERVK 248 502 -26 4 1167 637 91 9 26 chr3 76295535 76295648 -83304135 + Lx LINE L1 6540 6650 -4 4 1167 333 277 168 11 chr3 76296685 76296780 -83303003 + RSINE1 SINE B4 4 113 -52 4 1167 450 0 0 0 chr3 76296835 76296885 -83302898 + (TG)n Simple_repeat Simple_repeat 1 50 0 4 1167 350 378 118 25 chr3 76298006 76298372 -83301411 - MER76 LTR ERVL -26 665 266 4 1167 375 358 39 17 chr3 76298402 76298581 -83301202 - MER76 LTR ERVL -508 183 1 4 1167 973 347 40 10 chr3 76298802 76299201 -83300582 + Lx8 LINE L1 6908 7318 -155 4 1167 47 33 0 0 chr3 76300214 76300275 -83299508 + AT_rich Low_complexity Low_complexity 1 61 0 4 1167 1989 176 50 60 chr3 76301227 76301730 -83298053 - L1_Mur2 LINE L1 -962 4915 4418 4 1167 9638 141 40 108 chr3 76301697 76302000 -83297783 + L1_Mur2 LINE L1 1513 1763 -4114 4 1167 2504 35 0 28 chr3 76302000 76302325 -83297458 - L1Md_F3 LINE L1 -11 6573 6258 4 1167 9638 141 40 108 chr3 76302325 76302610 -83297173 + L1_Mur2 LINE L1 1764 2061 -3816 4 1167 510 46 0 0 chr3 76302610 76302675 -83297108 + (CA)n Simple_repeat Simple_repeat 1 65 0 4 1167 9638 141 40 108 chr3 76302675 76304359 -83295424 + L1_Mur2 LINE L1 2062 3632 -2245 4 1167 672 108 0 0 chr3 76304364 76304457 -83295326 - MTB_Mm LTR MaLR -314 93 1 4 1167 995 150 29 10 chr3 76304457 76304665 -83295118 + L1_Mur2 LINE L1 3818 4029 -1848 4 1167 22 35 0 0 chr3 76304738 76304767 -83295016 + AT_rich Low_complexity Low_complexity 1 29 0 4 1167 267 333 41 34 chr3 76304955 76305101 -83294682 - Lx8 LINE L1 -198 7275 7129 4 1167 2637 208 58 49 chr3 76305171 76306010 -83293773 - RMER17D LTR ERVK -15 874 28 4 1167 985 303 43 6 chr3 76306022 76306371 -83293412 - Lx8 LINE L1 -367 7106 6745 4 1167 318 320 31 0 chr3 76306703 76306800 -83292983 + PB1D7 SINE Alu 12 111 -9 4 1167 222 169 45 15 chr3 76307943 76308009 -83291774 + (TTAAA)n Simple_repeat Simple_repeat 3 70 0 4 1167 1446 166 80 14 chr3 76308267 76308555 -83291228 - IAPEY3_LTR LTR ERVK -12 320 14 4 1167 4633 110 13 23 chr3 76308563 76309459 -83290324 - IAPEY3-int LTR ERVK 0 7581 6743 4 1167 3327 98 0 2 chr3 76309455 76309904 -83289879 - IAPEY3-int LTR ERVK -1373 6208 5761 4 1167 3273 91 5 16 chr3 76309895 76310340 -83289443 - IAPEY3-int LTR ERVK -1939 5642 5203 4 1167 836 81 35 49 chr3 76310595 76310738 -83289045 - IAPEY3-int LTR ERVK -2911 4670 4530 4 1167 441 193 22 38 chr3 76310747 76310876 -83288907 - IAPEY3-int LTR ERVK -2380 2464 2357 4 1167 2669 174 96 74 chr3 76310879 76311569 -83288214 - ETnERV2-int LTR ERVK -3135 4271 3567 4 1167 659 202 0 0 chr3 76311595 76311714 -83288069 - ETnERV2-int LTR ERVK -4653 2753 2635 4 1167 280 279 0 55 chr3 76311726 76311817 -83287966 - ETnERV2-int LTR ERVK -4867 2539 2454 4 1167 427 229 93 0 chr3 76311828 76311946 -83287837 - ETnERV2-int LTR ERVK -5557 1849 1721 4 1167 1416 206 108 43 chr3 76311948 76312428 -83287355 - ETnERV2-int LTR ERVK -4750 656 251 4 1167 370 139 23 108 chr3 76312540 76312636 -83287147 - MMERVK10C-int LTR ERVK -6629 952 868 4 1167 11288 53 18 4 chr3 76312636 76314065 -83285718 - IAPLTR4_I LTR ERVK 0 1470 22 4 1167 1516 150 83 20 chr3 76314065 76314365 -83285418 - IAPEY3_LTR LTR ERVK 0 332 14 4 1167 639 142 0 0 chr3 76314606 76314712 -83285071 + (TTCC)n Simple_repeat Simple_repeat 1 106 0 4 1167 234 316 66 0 chr3 76315936 76316012 -83283771 + ID_B1 SINE B4 77 157 -67 4 1167 2386 223 35 53 chr3 76316307 76317005 -83282778 - RMER6A LTR ERVK 0 756 1 4 1167 261 0 0 0 chr3 76318089 76318118 -83281665 + (TG)n Simple_repeat Simple_repeat 2 30 0 4 1167 324 70 0 0 chr3 76318298 76318341 -83281442 + (TA)n Simple_repeat Simple_repeat 2 44 0 4 1167 1170 54 0 7 chr3 76318349 76318498 -83281285 - B1_Mus1 SINE Alu 0 148 1 4 1167 1065 108 0 0 chr3 76318721 76318869 -83280914 + B1_Mus1 SINE Alu 1 148 0 4 1167 327 121 0 0 chr3 76318875 76318933 -83280850 + (A)n Simple_repeat Simple_repeat 1 58 0 4 1167 1268 181 65 99 chr3 76319864 76320188 -83279595 + ORR1B1 LTR MaLR 82 394 0 4 1167 1228 165 14 114 chr3 76320697 76320978 -83278805 - RMER15 LTR ERVL -322 253 1 4 1167 261 326 100 8 chr3 76321132 76321262 -83278521 + LTR40a LTR ERVL 300 441 -78 4 1167 1220 108 0 20 chr3 76321853 76322051 -83277732 - L1Md_F2 LINE L1 -4 6578 6385 4 1167 608 41 0 0 chr3 76322127 76322200 -83277583 - MERVL-int LTR ERVL -411 5074 5002 4 1167 6652 4 0 0 chr3 76322240 76323001 -83276782 - L1_Mm LINE L1 -2040 3843 3083 4 1167 19916 68 10 2 chr3 76322991 76326185 -83273598 - L1Md_F2 LINE L1 -191 6391 3168 4 1167 3014 223 27 32 chr3 76326193 76326903 -83272880 - Lx5 LINE L1 -428 6622 5917 4 1167 336 24 0 0 chr3 76326949 76326990 -83272793 + (TTTTG)n Simple_repeat Simple_repeat 2 42 0 4 1167 440 241 26 35 chr3 76327442 76327558 -83272225 - B3 SINE B2 -100 116 2 4 1167 23 68 0 0 chr3 76327902 76327946 -83271837 + AT_rich Low_complexity Low_complexity 1 44 0 4 1167 709 164 13 0 chr3 76328013 76328172 -83271611 + (TA)n Simple_repeat Simple_repeat 1 161 0 4 1167 261 0 0 0 chr3 76328172 76328201 -83271582 + (TG)n Simple_repeat Simple_repeat 2 30 0 4 1167 28 0 0 0 chr3 76328954 76328982 -83270801 + AT_rich Low_complexity Low_complexity 1 28 0 4 1167 1100 57 25 13 chr3 76329044 76329203 -83270580 + L1Md_F2 LINE L1 6422 6582 0 4 1167 2880 77 26 3 chr3 76329809 76330200 -83269583 - MTB LTR MaLR 0 400 1 4 1167 182 150 0 24 chr3 76330655 76330696 -83269087 + (TTA)n Simple_repeat Simple_repeat 2 41 0 4 1167 180 0 0 0 chr3 76331538 76331558 -83268225 + (T)n Simple_repeat Simple_repeat 1 20 0 4 1167 324 276 124 10 chr3 76332155 76332349 -83267434 - Lx7 LINE L1 0 7696 7481 4 1167 243 133 0 0 chr3 76332349 76332394 -83267389 + (CA)n Simple_repeat Simple_repeat 2 46 0 4 1167 1736 187 96 23 chr3 76332485 76332912 -83266871 - RLTR19-int LTR ERVK -1848 4289 3832 4 1167 1689 195 85 182 chr3 76332911 76333165 -83266618 - RLTR19-int LTR ERVK -3370 2767 2521 4 1167 187 269 39 0 chr3 76333165 76333217 -83266566 - L3 LINE CR1 -1664 2825 2772 4 1167 1689 195 85 182 chr3 76333217 76333605 -83266178 - RLTR19-int LTR ERVK -3370 2520 2141 4 1167 17411 29 25 22 chr3 76333734 76335381 -83264402 - L1Md_A LINE L1 0 6582 4897 4 1167 225 183 46 77 chr3 76335381 76335446 -83264337 + RMER20A LTR ERVK 186 248 -268 4 1167 17411 29 25 22 chr3 76335446 76336635 -83263148 - L1Md_A LINE L1 0 4896 3678 4 1167 357 173 13 0 chr3 76336659 76336734 -83263049 - RLTR19-int LTR ERVK -4213 1924 1849 4 1167 1930 184 201 16 chr3 76336743 76337405 -83262378 - RLTR19-int LTR ERVK -4498 1639 807 4 1167 1449 264 68 35 chr3 76337416 76338047 -83261736 - L1_Mur3 LINE L1 -141 5739 5088 4 1167 1048 239 67 10 chr3 76338605 76338905 -83260878 - L1_Mur3 LINE L1 -764 5116 4800 4 1167 23 0 0 0 chr3 76340846 76340869 -83258914 + AT_rich Low_complexity Low_complexity 1 23 0 4 1167 1241 170 0 4 chr3 76341160 76341385 -83258398 - Lx LINE L1 -6 6648 6425 4 1167 234 0 0 0 chr3 76342778 76342804 -83256979 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 5 1167 240 176 0 19 chr3 76343307 76343359 -83256424 + MTE2a LTR MaLR 305 355 -24 5 1167 188 67 33 0 chr3 76343409 76343439 -83256344 + (TATG)n Simple_repeat Simple_repeat 2 32 0 5 1167 220 359 8 8 chr3 76343718 76343847 -83255936 + (CA)n Simple_repeat Simple_repeat 2 130 0 5 1167 4614 264 55 105 chr3 76343860 76344566 -83255217 - Lx7 LINE L1 -287 7409 6773 5 1167 1670 85 3 104 chr3 76344566 76344855 -83254928 + L1_Mus2 LINE L1 6307 6566 0 5 1167 4614 262 50 91 chr3 76344855 76346130 -83253653 - Lx7 LINE L1 -924 6772 5522 5 1167 2084 231 20 9 chr3 76346135 76346672 -83253111 - Lx7 LINE L1 -946 4934 4392 5 1167 27 62 0 0 chr3 76346729 76346777 -83253006 + AT_rich Low_complexity Low_complexity 1 48 0 5 1167 6670 131 21 8 chr3 76346941 76347995 -83251788 - Lx3B LINE L1 -123 6850 5783 5 1167 3706 32 2 0 chr3 76348015 76348457 -83251326 - L1Md_A LINE L1 0 6582 6140 5 1167 3164 27 0 0 chr3 76348457 76348825 -83250958 + L1Md_A LINE L1 5824 6191 -391 5 1167 283 149 0 0 chr3 76348818 76348865 -83250918 - Lx3B LINE L1 -1171 5802 5756 5 1167 1182 222 13 72 chr3 76348863 76349251 -83250532 - Lx7 LINE L1 -3013 2867 2503 5 1167 1343 231 24 153 chr3 76349391 76349856 -83249927 - MTD LTR MaLR 0 419 15 5 1167 337 93 0 0 chr3 76350298 76350341 -83249442 - Lx3_Mus LINE L1 -140 6869 6827 5 1167 475 119 48 63 chr3 76350342 76350468 -83249315 + Lx3A LINE L1 6846 6969 -12 5 1167 531 82 0 0 chr3 76350470 76350543 -83249240 + (TAAA)n Simple_repeat Simple_repeat 4 76 0 5 1167 2513 125 38 0 chr3 76351787 76352204 -83247579 - Lx2B LINE L1 -301 6699 6267 5 1167 1577 186 24 0 chr3 76352204 76352499 -83247284 + Lx2A1 LINE L1 6692 6993 -15 5 1167 219 185 0 18 chr3 76352613 76352668 -83247115 + A-rich Low_complexity Low_complexity 1 54 0 5 1167 1198 31 18 12 chr3 76353049 76353212 -83246571 - L1Md_F3 LINE L1 -1 6583 6420 5 1167 21 57 0 0 chr3 76354464 76354499 -83245284 + AT_rich Low_complexity Low_complexity 1 35 0 5 1167 4259 68 12 3 chr3 76354707 76355272 -83244511 + L1Md_F2 LINE L1 6011 6580 -2 5 1167 35 41 0 0 chr3 76355286 76355335 -83244448 + AT_rich Low_complexity Low_complexity 1 49 0 5 1167 280 323 31 12 chr3 76355586 76355749 -83244034 + CT-rich Low_complexity Low_complexity 5 170 0 5 1167 29 47 0 0 chr3 76355937 76355980 -83243803 + AT_rich Low_complexity Low_complexity 1 43 0 5 1167 198 167 0 0 chr3 76356353 76356389 -83243394 + T-rich Low_complexity Low_complexity 1 36 0 5 1167 489 17 0 0 chr3 76356584 76356642 -83243141 + (TC)n Simple_repeat Simple_repeat 2 59 0 5 1167 288 0 0 0 chr3 76356642 76356673 -83243110 + (TG)n Simple_repeat Simple_repeat 1 32 0 5 1167 758 262 11 0 chr3 76357012 76357203 -83242580 + Lx6 LINE L1 7250 7442 -18 5 1167 6661 109 25 6 chr3 76357231 76358240 -83241543 - Lx3_Mus LINE L1 -8 7001 5974 5 1167 3488 80 2 2 chr3 76358240 76358718 -83241065 + Lx3_Mus LINE L1 4949 5426 -460 5 1167 2671 23 2 248 chr3 76358719 76359236 -83240547 - RLTR10 LTR ERVK 0 390 1 5 1167 17089 25 4 0 chr3 76359238 76361214 -83238569 - RLTR10-int LTR ERVK -3 1984 1 5 1167 2674 20 2 251 chr3 76361214 76361733 -83238050 - RLTR10 LTR ERVK 0 390 1 5 1167 3415 72 15 0 chr3 76361733 76362269 -83237514 + Lx3_Mus LINE L1 5422 5962 -1047 5 1167 26 30 0 0 chr3 76362354 76362387 -83237396 + AT_rich Low_complexity Low_complexity 1 33 0 5 1167 444 91 0 0 chr3 76362478 76362544 -83237239 + (CA)n Simple_repeat Simple_repeat 1 66 0 5 1167 7381 234 105 69 chr3 76362665 76363101 -83236682 - Lx7 LINE L1 -722 6974 6491 5 1167 240 243 207 0 chr3 76363101 76363212 -83236571 - Charlie13a DNA Charlie -344 1170 1037 5 1167 7381 234 105 69 chr3 76363212 76364380 -83235403 - Lx7 LINE L1 -722 6490 5190 5 1167 189 0 0 0 chr3 76364380 76364401 -83235382 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 5 1167 7381 207 50 23 chr3 76364401 76365534 -83234249 - Lx7 LINE L1 -691 5189 4026 5 1167 1606 192 16 3 chr3 76365965 76366273 -83233510 - Lx LINE L1 -3 6651 6340 5 1167 186 143 0 0 chr3 76371033 76371068 -83228715 + (TAAAA)n Simple_repeat Simple_repeat 3 37 0 5 1167 29 94 0 0 chr3 76371738 76371823 -83227960 + AT_rich Low_complexity Low_complexity 1 85 0 5 1167 22 0 0 0 chr3 76371932 76371954 -83227829 + AT_rich Low_complexity Low_complexity 1 22 0 5 1167 1848 298 56 72 chr3 76372160 76372922 -83226861 - Lx8 LINE L1 -34 7439 6691 5 1167 2146 199 139 36 chr3 76372922 76373146 -83226637 - RMER19C LTR ERVK 0 611 386 5 1167 324 48 0 0 chr3 76373146 76373188 -83226595 + (TC)n Simple_repeat Simple_repeat 2 43 0 5 1167 405 81 0 0 chr3 76373189 76373251 -83226532 + (TA)n Simple_repeat Simple_repeat 1 62 0 5 1167 2146 199 139 36 chr3 76373251 76373578 -83226205 - RMER19C LTR ERVK -226 385 1 5 1167 1848 298 56 72 chr3 76373578 76373672 -83226111 - Lx8 LINE L1 -783 6690 6599 5 1167 496 287 117 38 chr3 76373684 76374053 -83225730 - L1MD LINE L1 -437 5805 5408 5 1167 23 0 0 0 chr3 76374141 76374164 -83225619 + AT_rich Low_complexity Low_complexity 1 23 0 5 1167 30 45 0 0 chr3 76374704 76374748 -83225035 + AT_rich Low_complexity Low_complexity 1 44 0 5 1167 337 370 44 99 chr3 76375072 76375456 -83224327 + MTEa LTR MaLR 17 379 0 5 1167 1311 279 29 41 chr3 76375613 76375896 -83223887 - MTD LTR MaLR -13 406 121 5 1167 4836 52 0 0 chr3 76375896 76376489 -83223294 + L1Md_T LINE L1 5990 6582 0 5 1167 1311 279 29 41 chr3 76376489 76376616 -83223167 - MTD LTR MaLR -299 120 1 5 1167 292 71 36 0 chr3 76376652 76376708 -83223075 + (TC)n Simple_repeat Simple_repeat 1 58 0 5 1167 26 30 0 0 chr3 76377827 76377860 -83221923 + AT_rich Low_complexity Low_complexity 1 33 0 5 1167 29 0 0 0 chr3 76378040 76378069 -83221714 + AT_rich Low_complexity Low_complexity 1 29 0 5 1167 1905 161 31 0 chr3 76378385 76378702 -83221081 + ORR1A2 LTR MaLR 1 327 0 5 1167 201 268 0 0 chr3 76379480 76379536 -83220247 + A-rich Low_complexity Low_complexity 1 56 0 5 1167 1735 202 72 13 chr3 76379580 76379971 -83219812 - MTC LTR MaLR -3 418 5 5 1167 6198 14 0 0 chr3 76380034 76380839 -83218944 - L1Md_A LINE L1 -602 5980 5176 5 1167 2228 47 4 0 chr3 76380839 76381118 -83218665 + L1Md_A LINE L1 6302 6581 -1 5 1167 342 0 0 0 chr3 76382142 76382180 -83217603 + (TTG)n Simple_repeat Simple_repeat 2 39 0 5 1167 429 20 0 0 chr3 76382679 76382729 -83217054 + (TG)n Simple_repeat Simple_repeat 1 50 0 5 1167 200 114 29 0 chr3 76382762 76382797 -83216986 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 5 1167 424 326 62 55 chr3 76382807 76383080 -83216703 - ORR1D2 LTR MaLR -69 290 16 5 1167 2941 55 31 5 chr3 76383225 76383611 -83216172 + MTA_Mm LTR MaLR 1 396 0 5 1167 303 175 141 20 chr3 76383611 76383710 -83216073 + Lx3C LINE L1 6882 6999 -1 5 1167 1517 295 93 45 chr3 76383839 76384054 -83215729 - ORR1D2-int LTR MaLR -11 1569 1186 5 1167 183 80 0 0 chr3 76384054 76384079 -83215704 + (CAAA)n Simple_repeat Simple_repeat 4 28 0 5 1167 1517 298 83 34 chr3 76384079 76384570 -83215213 - ORR1D2-int LTR MaLR -185 1185 681 5 1167 1898 277 22 24 chr3 76384628 76385444 -83214339 - Lx5 LINE L1 -7 7043 6150 5 1167 756 208 18 0 chr3 76385450 76385618 -83214165 + Lx5 LINE L1 5672 5842 -1208 5 1167 933 118 0 49 chr3 76385618 76385760 -83214023 + B1_Mus1 SINE Alu 2 136 -12 5 1167 495 0 0 0 chr3 76385766 76385821 -83213962 + (GAA)n Simple_repeat Simple_repeat 2 56 0 5 1167 1282 56 0 22 chr3 76385821 76386003 -83213780 + (GGAGAA)n Simple_repeat Simple_repeat 3 180 0 5 1167 608 253 99 23 chr3 76386007 76386270 -83213513 + Lx5 LINE L1 5827 6109 -941 5 1167 527 244 119 5 chr3 76386429 76386623 -83213160 - RMER17C LTR ERVK -194 216 1 5 1167 292 306 112 151 chr3 76386624 76386713 -83213070 - ORR1D2-int LTR MaLR -961 619 537 5 1167 1192 48 0 0 chr3 76386713 76386860 -83212923 - B1_Mm SINE Alu 0 147 1 5 1167 547 267 108 63 chr3 76386860 76387203 -83212580 - ORR1D2-int LTR MaLR -1044 536 180 5 1167 985 285 117 59 chr3 76387492 76387595 -83212188 - Lx6 LINE L1 -26 7434 7312 5 1167 362 21 21 0 chr3 76387595 76387642 -83212141 + (GA)n Simple_repeat Simple_repeat 1 48 0 5 1167 985 290 114 55 chr3 76387642 76388033 -83211750 - Lx6 LINE L1 -149 7311 6559 5 1167 21 71 0 0 chr3 76388154 76388196 -83211587 + AT_rich Low_complexity Low_complexity 1 42 0 5 1167 366 368 28 52 chr3 76388395 76388607 -83211176 - MLT1F1 LTR MaLR -159 410 204 5 1167 556 405 35 13 chr3 76388662 76388972 -83210811 - MER44B DNA MER2_type -220 330 14 5 1167 282 277 24 12 chr3 76389034 76389118 -83210665 - MLT1F1 LTR MaLR -464 105 21 5 1167 826 289 80 15 chr3 76389863 76390127 -83209656 - ORR1D2 LTR MaLR -2 368 88 5 1167 877 62 0 46 chr3 76390131 76390282 -83209501 + (TTCCC)n Simple_repeat Simple_repeat 3 146 0 5 1167 222 37 0 0 chr3 76390294 76390321 -83209462 + (CTTA)n Simple_repeat Simple_repeat 1 27 0 5 1167 2081 148 24 87 chr3 76390321 76390771 -83209012 - Lx4A LINE L1 0 7058 6637 5 1167 542 320 47 33 chr3 76391000 76391213 -83208570 - B3 SINE B2 0 216 1 5 1167 544 267 83 5 chr3 76391500 76391718 -83208065 - Lx9 LINE L1 -1 7643 7409 5 1167 34 42 0 0 chr3 76391772 76391820 -83207963 + AT_rich Low_complexity Low_complexity 1 48 0 5 1167 207 170 43 0 chr3 76391881 76391928 -83207855 + (TA)n Simple_repeat Simple_repeat 2 50 0 5 1167 392 299 134 34 chr3 76391983 76392371 -83207412 - L1M4 LINE L1 -1270 4876 4450 5 1167 270 0 0 0 chr3 76392660 76392690 -83207093 + (CA)n Simple_repeat Simple_repeat 2 31 0 5 1167 452 284 22 148 chr3 76393274 76393633 -83206150 - L1_Mur3 LINE L1 -3829 2051 1738 5 1167 1068 94 41 0 chr3 76394242 76394413 -83205370 + Lx3_Mus LINE L1 6832 7009 0 5 1167 341 329 131 38 chr3 76394871 76394965 -83204818 + L1M2 LINE L1 2579 2682 -3165 5 1167 546 57 0 0 chr3 76394965 76395035 -83204748 + (TA)n Simple_repeat Simple_repeat 1 70 0 5 1167 424 299 141 20 chr3 76395035 76395340 -83204443 + L1M2 LINE L1 2683 3027 -3116 5 1167 746 312 59 3 chr3 76395917 76396254 -83203529 - ORR1E LTR MaLR 0 359 4 5 1167 216 0 0 0 chr3 76397530 76397554 -83202229 + (CA)n Simple_repeat Simple_repeat 1 24 0 5 1167 321 47 0 0 chr3 76399267 76399310 -83200473 + (TTTA)n Simple_repeat Simple_repeat 1 43 0 5 1167 5967 149 40 11 chr3 76399310 76400348 -83199435 - Lx3_Mus LINE L1 -23 6986 5917 5 1167 414 0 0 0 chr3 76400391 76400437 -83199346 + (CA)n Simple_repeat Simple_repeat 1 46 0 5 1167 194 339 98 8 chr3 76400440 76400571 -83199212 + MIRm SINE MIR 14 167 -109 5 1167 27 0 0 0 chr3 76400712 76400739 -83199044 + AT_rich Low_complexity Low_complexity 1 27 0 5 1167 598 197 110 0 chr3 76402021 76402148 -83197635 - B1_Mur4 SINE Alu -8 142 2 5 1167 40128 15 2 6 chr3 76402693 76408887 -83190896 - L1Md_A LINE L1 0 6582 422 5 1167 300 102 0 0 chr3 76408991 76409040 -83190743 + (TG)n Simple_repeat Simple_repeat 2 50 0 5 1167 475 317 12 64 chr3 76409040 76409212 -83190571 - B3 SINE B2 -52 164 2 5 1167 23 54 0 0 chr3 76409941 76409978 -83189805 + AT_rich Low_complexity Low_complexity 1 37 0 5 1167 21 82 0 0 chr3 76410327 76410376 -83189407 + AT_rich Low_complexity Low_complexity 1 49 0 6 1167 3387 153 23 20 chr3 76410512 76411120 -83188663 - Lx2B LINE L1 -2 6998 6389 6 1167 28 29 0 0 chr3 76412013 76412048 -83187735 + AT_rich Low_complexity Low_complexity 1 35 0 6 1167 1474 238 122 54 chr3 76412567 76413365 -83186418 + RMER6C LTR ERVK 7 720 0 6 1168 2049 126 21 15 chr3 76416097 76416435 -83183348 - Lx LINE L1 -8 7000 6661 6 1168 269 231 15 44 chr3 76417341 76417409 -83182374 - MIR SINE MIR -30 232 167 6 1168 21 0 0 0 chr3 76417849 76417870 -83181913 + AT_rich Low_complexity Low_complexity 1 21 0 6 1168 6024 117 19 10 chr3 76418358 76419282 -83180501 - Lx LINE L1 0 6654 5722 6 1168 234 0 0 0 chr3 76419437 76419463 -83180320 + (TAA)n Simple_repeat Simple_repeat 2 27 0 6 1168 381 408 29 0 chr3 76419788 76419994 -83179789 + MLT1F LTR MaLR 156 367 -181 6 1168 393 22 0 0 chr3 76421576 76421622 -83178161 + (TA)n Simple_repeat Simple_repeat 2 47 0 6 1168 473 191 114 13 chr3 76422073 76422222 -83177561 + Lx9 LINE L1 7348 7511 -133 6 1168 367 224 138 87 chr3 76422215 76422310 -83177473 + Lx9 LINE L1 7439 7537 -107 6 1168 1013 168 5 0 chr3 76422310 76422501 -83177282 - Lx LINE L1 -6 6648 6457 6 1168 367 224 138 87 chr3 76422501 76422601 -83177182 + Lx9 LINE L1 7538 7644 0 6 1168 21 0 0 0 chr3 76423173 76423194 -83176589 + AT_rich Low_complexity Low_complexity 1 21 0 6 1168 478 320 0 26 chr3 76423463 76423614 -83176169 + B1F SINE Alu 2 148 -1 6 1168 451 358 6 30 chr3 76424615 76424782 -83175001 + RSINE1 SINE B4 2 164 -1 6 1168 1052 102 72 0 chr3 76425259 76425426 -83174357 + B2_Mm1a SINE B2 10 188 -5 6 1168 31 68 0 0 chr3 76425924 76425983 -83173800 + AT_rich Low_complexity Low_complexity 1 59 0 6 1168 24 32 0 0 chr3 76426409 76426440 -83173343 + AT_rich Low_complexity Low_complexity 1 31 0 6 1168 10496 87 16 7 chr3 76427329 76428843 -83170940 - L1_Mur1 LINE L1 -736 5150 3623 6 1168 190 312 65 0 chr3 76429332 76429409 -83170374 - MIRb SINE MIR -28 240 159 6 1168 2631 146 114 23 chr3 76430851 76431378 -83168405 - Lx2 LINE L1 -1 6996 6422 6 1168 771 112 0 0 chr3 76431838 76431954 -83167829 + (TA)n Simple_repeat Simple_repeat 2 117 0 6 1168 292 326 7 21 chr3 76433804 76433948 -83165835 + CT-rich Low_complexity Low_complexity 3 144 0 6 1168 284 306 116 71 chr3 76434024 76434249 -83165534 - MLT2C2 LTR ERVL -68 396 162 6 1168 23 0 0 0 chr3 76436734 76436757 -83163026 + AT_rich Low_complexity Low_complexity 1 23 0 6 1168 647 248 187 14 chr3 76437025 76437273 -83162510 - Lx5 LINE L1 -21 7037 6726 6 1168 1452 175 99 176 chr3 76437271 76437778 -83162005 + L1_Mur2 LINE L1 5025 5492 -385 6 1168 315 283 162 13 chr3 76438275 76438504 -83161279 - L1MA6 LINE L1 -17 6283 6021 6 1168 2885 50 0 0 chr3 76438822 76439183 -83160600 - L1Md_T LINE L1 0 6582 6222 6 1168 22 0 0 0 chr3 76439808 76439830 -83159953 + AT_rich Low_complexity Low_complexity 1 22 0 6 1168 525 284 9 0 chr3 76439932 76440048 -83159735 + B1F2 SINE Alu 26 142 -7 6 1168 23 0 0 0 chr3 76440099 76440122 -83159661 + AT_rich Low_complexity Low_complexity 1 23 0 6 1168 468 0 0 0 chr3 76441422 76441474 -83158309 + (T)n Simple_repeat Simple_repeat 1 52 0 6 1168 273 316 0 40 chr3 76442391 76442490 -83157293 - MIRb SINE MIR -60 208 114 6 1168 252 213 90 39 chr3 76442938 76443016 -83156767 + BC1_Mm scRNA scRNA 16 97 -55 6 1168 201 167 36 18 chr3 76443122 76443177 -83156606 + (TA)n Simple_repeat Simple_repeat 2 57 0 6 1168 414 0 0 0 chr3 76443377 76443423 -83156360 + (TG)n Simple_repeat Simple_repeat 1 46 0 6 1168 241 186 10 58 chr3 76444111 76444214 -83155569 + A-rich Low_complexity Low_complexity 4 101 0 6 1168 349 33 83 0 chr3 76445049 76445109 -83154674 + (TTTTA)n Simple_repeat Simple_repeat 1 65 0 6 1168 1951 149 50 25 chr3 76445109 76445507 -83154276 - Lx2B LINE L1 -5 6995 6588 6 1168 6700 198 25 11 chr3 76446010 76447686 -83152097 - Lx5 LINE L1 -11 7039 5326 6 1168 776 254 138 5 chr3 76447815 76448025 -83151758 + RLTR18B LTR ERVK 1 238 -274 6 1168 1390 230 34 52 chr3 76448026 76448352 -83151431 + RLTR18B LTR ERVK 186 505 -7 6 1168 551 316 57 5 chr3 76448567 76448777 -83151006 + ID_B1 SINE B4 1 221 -3 6 1168 668 148 0 15 chr3 76448800 76448937 -83150846 + GA-rich Low_complexity Low_complexity 3 137 0 6 1168 304 306 64 32 chr3 76449905 76450030 -83149753 + L1MD LINE L1 3073 3201 -2945 6 1168 213 39 0 0 chr3 76450590 76450616 -83149167 + (CA)n Simple_repeat Simple_repeat 1 26 0 6 1168 819 287 83 38 chr3 76450914 76451204 -83148579 + Lx6 LINE L1 7157 7459 -1 6 1168 683 124 9 0 chr3 76452787 76452900 -83146883 + (GA)n Simple_repeat Simple_repeat 2 115 0 6 1168 351 0 0 0 chr3 76453150 76453189 -83146594 + (CA)n Simple_repeat Simple_repeat 1 39 0 6 1168 204 158 0 0 chr3 76453270 76453308 -83146475 + (TCCA)n Simple_repeat Simple_repeat 4 41 0 6 1168 21 0 0 0 chr3 76454187 76454208 -83145575 + AT_rich Low_complexity Low_complexity 1 21 0 6 1168 374 296 114 4 chr3 76455282 76455536 -83144247 + L1M2 LINE L1 4429 4710 -1433 6 1168 455 310 148 8 chr3 76455591 76455955 -83143828 + L1M4 LINE L1 4731 5145 -1001 6 1168 319 294 78 9 chr3 76455996 76456311 -83143472 + L1M4 LINE L1 5230 5573 -595 6 1168 21 0 0 0 chr3 76456813 76456834 -83142949 + AT_rich Low_complexity Low_complexity 1 21 0 6 1168 22 35 0 0 chr3 76457175 76457204 -83142579 + AT_rich Low_complexity Low_complexity 1 29 0 6 1168 259 297 83 62 chr3 76457725 76457841 -83141942 - PB1D7 SINE Alu -5 115 3 6 1168 21 0 0 0 chr3 76462186 76462207 -83137576 + AT_rich Low_complexity Low_complexity 1 21 0 6 1168 390 302 115 11 chr3 76462802 76462993 -83136790 - RMER5 LTR ERV1 -67 467 257 6 1168 251 257 0 75 chr3 76463952 76464032 -83135751 - MLT1A1 LTR MaLR -13 395 322 6 1168 30 59 0 0 chr3 76464455 76464506 -83135277 + AT_rich Low_complexity Low_complexity 1 51 0 6 1168 24 77 0 0 chr3 76465183 76465235 -83134548 + AT_rich Low_complexity Low_complexity 1 52 0 6 1168 3067 65 7 22 chr3 76467670 76468081 -83131702 - L1_Mus1 LINE L1 -1 6566 6162 6 1168 222 174 0 0 chr3 76468839 76468885 -83130898 + (TA)n Simple_repeat Simple_repeat 2 47 0 6 1168 552 318 80 20 chr3 76469715 76469914 -83129869 + B3 SINE B2 1 211 -5 6 1168 489 256 91 23 chr3 76470926 76471058 -83128725 + B1_Mur4 SINE Alu 9 149 -1 6 1168 221 177 16 31 chr3 76471059 76471123 -83128660 + A-rich Low_complexity Low_complexity 4 66 0 6 1168 523 197 48 115 chr3 76471458 76471728 -83128055 + Lx7 LINE L1 7340 7591 -105 6 1168 245 196 0 0 chr3 76471738 76471789 -83127994 + (TTA)n Simple_repeat Simple_repeat 3 53 0 6 1168 351 207 244 16 chr3 76471789 76471912 -83127871 + Lx6 LINE L1 7305 7455 -5 6 1168 363 238 71 0 chr3 76472178 76472262 -83127521 + MTEa LTR MaLR 1 90 -289 6 1168 324 286 0 0 chr3 76472466 76472543 -83127240 - Tigger5 DNA MER2_type 0 2406 2330 6 1168 504 370 15 15 chr3 76472582 76472785 -83126998 - Tigger5 DNA MER2_type -2165 241 39 6 1168 405 136 0 0 chr3 76472884 76472950 -83126833 + (GA)n Simple_repeat Simple_repeat 1 66 0 6 1168 537 262 67 20 chr3 76473469 76473664 -83126119 + B3 SINE B2 5 208 -8 6 1168 21 36 0 0 chr3 76473704 76473732 -83126051 + AT_rich Low_complexity Low_complexity 1 28 0 6 1168 279 305 132 70 chr3 76474646 76475048 -83124735 - MER57F LTR ERV1 -9 427 1 6 1168 207 0 0 0 chr3 76475619 76475642 -83124141 + (CAG)n Simple_repeat Simple_repeat 1 23 0 6 1168 210 71 0 0 chr3 76476619 76476647 -83123136 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 6 1168 260 53 0 26 chr3 76476647 76476686 -83123097 + (TTTTC)n Simple_repeat Simple_repeat 4 41 0 6 1168 405 0 0 0 chr3 76476895 76476940 -83122843 + (TA)n Simple_repeat Simple_repeat 2 46 0 6 1168 621 162 0 0 chr3 76477253 76477364 -83122419 + CT-rich Low_complexity Low_complexity 3 113 0 6 1168 238 36 0 0 chr3 76477365 76477393 -83122390 + (TC)n Simple_repeat Simple_repeat 1 28 0 6 1168 219 36 0 0 chr3 76477397 76477425 -83122358 + (CATA)n Simple_repeat Simple_repeat 4 31 0 6 1168 387 310 17 28 chr3 76477847 76478026 -83121757 + Lx6 LINE L1 7257 7433 -27 6 1168 763 271 51 8 chr3 76479166 76479400 -83120383 + Lx6 LINE L1 5898 6141 -1319 6 1168 327 231 60 77 chr3 76479587 76479704 -83120079 - L1VL4 LINE L1 -5782 520 406 6 1168 478 258 138 25 chr3 76479754 76479913 -83119870 - B3 SINE B2 -34 182 6 6 1168 400 311 8 15 chr3 76480993 76481127 -83118656 + MIR3 SINE MIR 50 182 -26 6 1168 2730 47 0 9 chr3 76481491 76481828 -83117955 + L1_Mm LINE L1 5252 5586 -297 6 1168 8116 46 2 3 chr3 76481828 76482824 -83116959 + L1Md_F2 LINE L1 5587 6581 -1 6 1168 1298 87 0 26 chr3 76482894 76483056 -83116727 + B2_Mm1t SINE B2 1 161 -32 6 1168 225 0 0 0 chr3 76483056 76483081 -83116702 + (TAAA)n Simple_repeat Simple_repeat 1 25 0 6 1168 1298 87 0 26 chr3 76483081 76483107 -83116676 + B2_Mm1t SINE B2 162 184 -9 6 1168 243 0 0 0 chr3 76484154 76484181 -83115602 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 6 1168 627 264 23 61 chr3 76484231 76484445 -83115338 + Lx6 LINE L1 7255 7460 0 6 1168 474 18 0 0 chr3 76485487 76485542 -83114241 + (TTTA)n Simple_repeat Simple_repeat 2 56 0 6 1168 1179 69 0 0 chr3 76485542 76485687 -83114096 - B1_Mus1 SINE Alu -2 146 2 6 1168 257 333 83 0 chr3 76486001 76486145 -83113638 - RSINE1 SINE B4 -8 157 2 6 1168 352 290 55 116 chr3 76486293 76486492 -83113291 - MLT2B4 LTR ERVL -12 544 358 6 1168 338 351 46 20 chr3 76486685 76486880 -83112903 - ERVL-B4-int LTR ERVL -401 5313 5114 6 1168 317 279 0 7 chr3 76486980 76487121 -83112662 + (TA)n Simple_repeat Simple_repeat 1 140 0 7 1168 735 279 97 112 chr3 76487375 76487758 -83112025 - MTE2a LTR MaLR -2 377 1 7 1168 283 65 0 80 chr3 76487778 76487828 -83111955 - ERVL-B4-int LTR ERVL -786 4928 4883 6 1168 1678 236 45 5 chr3 76488770 76489171 -83110612 + MTC LTR MaLR 5 421 0 7 1168 1113 95 0 0 chr3 76489400 76489547 -83110236 - B1_Mus1 SINE Alu 0 148 2 7 1168 273 238 227 41 chr3 76489939 76490179 -83109604 + MLT1A1 LTR MaLR 84 408 0 7 1168 925 168 178 0 chr3 76490454 76490645 -83109138 - URR1A DNA MER1_type -1 225 1 7 1168 23 0 0 0 chr3 76491226 76491249 -83108534 + AT_rich Low_complexity Low_complexity 1 23 0 7 1168 3424 87 7 0 chr3 76491253 76491715 -83108068 + L1_Mus1 LINE L1 6103 6567 0 7 1168 21 0 0 0 chr3 76492123 76492144 -83107639 + AT_rich Low_complexity Low_complexity 1 21 0 7 1168 186 103 0 0 chr3 76493278 76493307 -83106476 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 7 1168 981 157 0 0 chr3 76493420 76493592 -83106191 + GA-rich Low_complexity Low_complexity 2 173 0 7 1168 459 92 0 0 chr3 76493856 76493921 -83105862 + (TG)n Simple_repeat Simple_repeat 2 66 0 7 1168 311 317 114 48 chr3 76494681 76494953 -83104830 + Lx9 LINE L1 7183 7472 -172 7 1168 2438 182 0 13 chr3 76495539 76495776 -83104007 - L1_Mur1 LINE L1 -782 5104 4868 7 1168 249 33 0 0 chr3 76495776 76495806 -83103977 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 7 1168 2438 182 0 13 chr3 76495806 76495942 -83103841 - L1_Mur1 LINE L1 -1019 4867 4738 7 1168 233 29 29 0 chr3 76495942 76495976 -83103807 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 7 1168 2438 182 0 13 chr3 76495976 76496075 -83103708 - L1_Mur1 LINE L1 -1149 4737 4639 7 1168 1242 138 9 14 chr3 76496071 76496291 -83103492 - L1_Mur1 LINE L1 -1419 4458 4240 7 1168 2405 134 26 38 chr3 76496291 76496384 -83103399 + Lx LINE L1 6229 6321 -333 7 1168 3961 104 13 142 chr3 76496384 76497247 -83102536 - RMER17A LTR ERVK 0 751 1 7 1168 2405 134 26 38 chr3 76497247 76497578 -83102205 + Lx LINE L1 6322 6648 -6 7 1168 33 80 0 0 chr3 76497938 76498013 -83101770 + AT_rich Low_complexity Low_complexity 1 75 0 7 1168 4272 79 51 2 chr3 76498016 76498600 -83101183 - L1_Mus1 LINE L1 -1 6566 5954 7 1168 234 289 0 0 chr3 76498677 76498767 -83101016 - L1M5 LINE L1 -385 5739 5650 7 1168 800 108 8 0 chr3 76498991 76499121 -83100662 + (GA)n Simple_repeat Simple_repeat 2 132 0 7 1168 583 305 9 79 chr3 76499458 76499672 -83100111 + B3 SINE B2 1 199 -17 7 1168 26 30 0 0 chr3 76499690 76499723 -83100060 + AT_rich Low_complexity Low_complexity 1 33 0 7 1168 28 29 0 0 chr3 76500410 76500445 -83099338 + AT_rich Low_complexity Low_complexity 1 35 0 1 1168 422 243 124 7 chr3 76501845 76501990 -83097793 - L1_Mur3 LINE L1 -6605 1107 946 2 1168 712 294 137 23 chr3 76502169 76502556 -83097227 - L1_Mur3 LINE L1 -6775 937 507 2 1168 3351 77 0 2 chr3 76502608 76503091 -83096692 - L1_Mm LINE L1 -3815 2068 1587 3 1168 9891 42 2 2 chr3 76504272 76506159 -83093624 - L1Md_F2 LINE L1 -1 6581 4697 4 1168 231 316 10 31 chr3 76506169 76506267 -83093516 - MLT1A1 LTR MaLR -12 396 301 5 1168 540 0 0 0 chr3 76506565 76506625 -83093158 + (TA)n Simple_repeat Simple_repeat 2 61 0 6 1168 612 0 0 0 chr3 76507099 76507167 -83092616 + (TTTC)n Simple_repeat Simple_repeat 1 68 0 7 1168 192 125 0 0 chr3 76507203 76507235 -83092548 + (GAAAA)n Simple_repeat Simple_repeat 4 35 0 8 1168 4251 46 2 2 chr3 76508118 76508643 -83091140 + L1Md_F2 LINE L1 6057 6581 -1 9 1168 1220 41 0 0 chr3 76508942 76509088 -83090695 + B1_Mm SINE Alu 2 147 0 1 1168 21 0 0 0 chr3 76509110 76509131 -83090652 + AT_rich Low_complexity Low_complexity 1 21 0 1 1168 22 0 0 0 chr3 76509479 76509501 -83090282 + AT_rich Low_complexity Low_complexity 1 22 0 1 1168 1194 271 132 47 chr3 76509657 76510377 -83089406 - Lx9 LINE L1 -3 7641 6861 1 1168 413 213 0 77 chr3 76510573 76510690 -83089093 - Lx2B LINE L1 -913 6087 5980 1 1168 25 0 0 0 chr3 76512345 76512370 -83087413 + AT_rich Low_complexity Low_complexity 1 25 0 1 1168 424 244 16 63 chr3 76514114 76514241 -83085542 - RLTR14 LTR ERV1 0 382 262 1 1168 3040 185 45 14 chr3 76515556 76516138 -83083645 + Lx2 LINE L1 6398 6997 0 1 1168 3244 99 2 15 chr3 76516180 76516661 -83083122 - L1Md_F2 LINE L1 -1 6581 6107 1 1168 2110 47 0 0 chr3 76516661 76516919 -83082864 + L1Md_F2 LINE L1 5828 6085 -497 1 1168 22 0 0 0 chr3 76519406 76519428 -83080355 + AT_rich Low_complexity Low_complexity 1 22 0 1 1168 10867 66 9 1 chr3 76520350 76522402 -83077381 + L1Md_F2 LINE L1 4488 6561 -21 2 1168 1126 52 0 0 chr3 76522399 76522534 -83077249 - L1_Mm LINE L1 -341 5542 5408 2 1168 441 133 27 0 chr3 76522513 76522588 -83077195 + L1Md_F2 LINE L1 5510 5586 -297 2 1168 7915 52 3 4 chr3 76522589 76523584 -83076199 + L1Md_F2 LINE L1 5588 6581 -1 2 1168 207 88 0 0 chr3 76523656 76523690 -83076093 + (TGGGGG)n Simple_repeat Simple_repeat 3 36 0 2 1168 21 0 0 0 chr3 76524170 76524191 -83075592 + AT_rich Low_complexity Low_complexity 1 21 0 2 1168 24 32 0 0 chr3 76524235 76524266 -83075517 + AT_rich Low_complexity Low_complexity 1 31 0 2 1168 339 273 141 0 chr3 76525075 76525174 -83074609 - Lx7 LINE L1 -604 7092 6980 2 1168 302 238 131 24 chr3 76525220 76525388 -83074395 - L1M4b LINE L1 -6355 979 794 2 1168 352 349 111 65 chr3 76525674 76525873 -83073910 - B3 SINE B2 0 216 9 2 1168 402 21 0 0 chr3 76525889 76525936 -83073847 + (TC)n Simple_repeat Simple_repeat 2 48 0 2 1168 1255 290 98 7 chr3 76526371 76526777 -83073006 + Lx7 LINE L1 6688 7130 -566 3 1168 420 312 24 71 chr3 76527067 76527364 -83072419 + Lx7 LINE L1 7131 7413 -283 3 1168 761 225 6 6 chr3 76527560 76527739 -83072044 - Lx6 LINE L1 -1513 5947 5769 3 1168 876 219 24 121 chr3 76527739 76527988 -83071795 + RLTR14 LTR ERV1 101 325 -57 3 1168 23 68 0 0 chr3 76527988 76528032 -83071751 + AT_rich Low_complexity Low_complexity 1 44 0 3 1168 22 0 0 0 chr3 76528068 76528090 -83071693 + AT_rich Low_complexity Low_complexity 1 22 0 3 1168 233 286 87 56 chr3 76528368 76528494 -83071289 + RLTR12B LTR ERVK 356 485 -43 3 1168 307 354 0 0 chr3 76529063 76529145 -83070638 - PB1D7 SINE Alu -5 115 34 3 1168 1215 311 87 23 chr3 76529672 76530511 -83069272 + L1M4b LINE L1 824 1716 -5618 3 1168 557 395 37 22 chr3 76530657 76530929 -83068854 + B4A SINE B4 2 277 -15 3 1168 577 251 24 6 chr3 76531262 76531426 -83068357 + L1_Mur3 LINE L1 364 530 -7198 3 1168 654 152 35 0 chr3 76531440 76531585 -83068198 + L1_Mur3 LINE L1 1442 1591 -4289 3 1168 244 158 98 73 chr3 76531591 76531673 -83068110 + L1_Mur3 LINE L1 1900 1983 -3897 3 1168 5549 139 5 0 chr3 76531754 76532611 -83067172 + L1VL4 LINE L1 33 893 -5409 4 1168 22495 152 33 11 chr3 76532604 76537748 -83062035 + L1_Mus3 LINE L1 1375 6637 -1 4 1168 711 204 20 0 chr3 76537828 76537980 -83061803 + L1_Mur3 LINE L1 2528 2682 -3198 3 1168 774 149 60 30 chr3 76537979 76538145 -83061638 + Lx4B LINE L1 5206 5376 -501 4 1168 3294 198 87 31 chr3 76538513 76539091 -83060692 + L1_Mur1 LINE L1 796 1419 -2493 4 1168 5885 97 56 7 chr3 76539091 76539964 -83059819 + Lx3_Mus LINE L1 6094 7009 0 4 1168 3294 191 54 79 chr3 76539964 76540614 -83059169 + L1_Mur1 LINE L1 1420 2047 -1865 4 1168 465 19 0 0 chr3 76540614 76540668 -83059115 + (CA)n Simple_repeat Simple_repeat 2 55 0 4 1168 3294 191 54 79 chr3 76540668 76540823 -83058960 + L1_Mur1 LINE L1 2048 2181 -1731 4 1168 341 241 40 33 chr3 76540822 76540972 -83058811 + L1_Mur3 LINE L1 5716 5866 -14 4 1168 336 291 32 73 chr3 76541293 76541512 -83058271 + L1_Mur2 LINE L1 892 1101 -6627 4 1168 270 164 0 0 chr3 76541514 76541569 -83058214 + (CA)n Simple_repeat Simple_repeat 1 55 0 4 1168 4202 199 39 52 chr3 76541569 76542551 -83057232 + L1_Mur2 LINE L1 1097 2056 -3821 4 1168 342 0 0 0 chr3 76542551 76542589 -83057194 + (CA)n Simple_repeat Simple_repeat 2 39 0 4 1168 4202 199 49 62 chr3 76542589 76542956 -83056827 + L1_Mur2 LINE L1 2057 2427 -3450 4 1168 1685 229 105 56 chr3 76542987 76543791 -83055992 + RLTR13D6 LTR ERVK 1 803 0 5 1168 5497 206 48 11 chr3 76543791 76545133 -83054650 + L1_Mur2 LINE L1 2434 3825 -2052 4 1168 1091 186 18 5 chr3 76545108 76545329 -83054454 + Lx4B LINE L1 5687 5910 -1148 4 1168 501 284 0 58 chr3 76545324 76545496 -83054287 + Lx5 LINE L1 5531 5692 -185 5 1168 423 245 0 0 chr3 76545494 76545596 -83054187 - L1_Mur1 LINE L1 -401 5485 5384 5 18 3857 242 15 31 chr3 76545594 76546584 -83053199 + Lx5 LINE L1 5680 6653 -397 5 1169 337 58 0 0 chr3 76546596 76546648 -83053135 + L1_Mus2 LINE L1 6515 6566 0 5 1169 570 80 40 10 chr3 76546674 76546775 -83053008 + (GAAAA)n Simple_repeat Simple_repeat 4 107 0 5 1169 1390 309 21 0 chr3 76546776 76547165 -83052618 + Lx5 LINE L1 6636 7032 -18 5 1169 270 0 0 0 chr3 76547165 76547195 -83052588 + (TTAA)n Simple_repeat Simple_repeat 1 30 0 5 1169 254 310 0 0 chr3 76547386 76547473 -83052310 + Lx7 LINE L1 5859 5945 -1751 5 1169 3231 237 24 88 chr3 76547474 76548545 -83051238 + Lx7 LINE L1 6691 7693 -3 5 1169 266 282 64 0 chr3 76548850 76548928 -83050855 - PB1D7 SINE Alu -37 83 1 5 1169 21 0 0 0 chr3 76548932 76548953 -83050830 + AT_rich Low_complexity Low_complexity 1 21 0 5 1169 1142 211 26 78 chr3 76550138 76550406 -83049377 + Lx6 LINE L1 6619 6872 -588 5 1169 504 0 0 0 chr3 76550410 76550466 -83049317 + (TG)n Simple_repeat Simple_repeat 1 56 0 6 1169 597 14 0 0 chr3 76550466 76550535 -83049248 + (GA)n Simple_repeat Simple_repeat 1 70 0 6 1169 1694 273 53 0 chr3 76550536 76550954 -83048829 + Lx6 LINE L1 6987 7426 -34 5 1169 756 326 44 28 chr3 76550954 76551273 -83048510 - RLTR23 LTR ERV1 0 430 107 6 1169 21 0 0 0 chr3 76551355 76551376 -83048407 + GC_rich Low_complexity Low_complexity 1 21 0 6 1169 461 226 0 11 chr3 76551382 76551476 -83048307 - RLTR23 LTR ERV1 -330 100 8 6 1169 1281 83 0 0 chr3 76551545 76551725 -83048058 + (TG)n Simple_repeat Simple_repeat 1 180 0 6 1169 309 314 90 119 chr3 76551725 76551902 -83047881 - B4 SINE B4 0 292 121 6 1169 417 105 13 13 chr3 76551906 76551983 -83047800 + Lx6 LINE L1 7384 7460 0 6 1169 284 64 0 21 chr3 76552050 76552098 -83047685 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 6 1169 3263 260 47 44 chr3 76552607 76553703 -83046080 + Lx7 LINE L1 6610 7696 0 6 1169 246 376 169 10 chr3 76554007 76554214 -83045569 + Tigger5 DNA MER2_type 3 242 -2164 6 1169 713 121 7 90 chr3 76555162 76555307 -83044476 - L1_Mus3 LINE L1 -307 6331 6199 7 1169 2054 70 7 27 chr3 76555307 76555603 -83044180 + L1_Mus3 LINE L1 6344 6633 -5 7 1169 211 351 64 0 chr3 76556000 76556094 -83043689 - MIR SINE MIR -140 122 23 7 1169 251 325 0 24 chr3 76556667 76556752 -83043031 - PB1D10 SINE Alu -8 109 27 7 1169 451 351 24 48 chr3 76557815 76558105 -83041678 - B4A SINE B4 -8 284 2 7 1169 34 0 0 0 chr3 76558448 76558482 -83041301 + AT_rich Low_complexity Low_complexity 1 34 0 7 1169 376 168 158 63 chr3 76558549 76558571 -83041212 + ORR1C2 LTR MaLR 208 231 -115 7 1169 366 107 0 0 chr3 76558571 76558627 -83041156 + (TG)n Simple_repeat Simple_repeat 2 57 0 7 1169 535 106 153 7 chr3 76558627 76558731 -83041052 + ORR1C2 LTR MaLR 232 384 0 7 1169 1049 289 90 37 chr3 76558888 76559637 -83040146 - Lx7 LINE L1 -1633 6063 5292 7 1169 2506 126 52 30 chr3 76559649 76560076 -83039707 - Lx LINE L1 -6 6648 6213 7 1169 637 367 47 18 chr3 76560083 76560463 -83039320 + Lx8 LINE L1 6840 7230 -243 7 1169 234 0 0 0 chr3 76560471 76560497 -83039286 + (T)n Simple_repeat Simple_repeat 1 26 0 8 1169 38365 40 5 6 chr3 76560517 76566870 -83032913 - L1Md_T LINE L1 -2 6580 241 8 1169 288 200 0 0 chr3 76567030 76567105 -83032678 + A-rich Low_complexity Low_complexity 1 75 0 8 1169 5551 135 32 2 chr3 76567297 76568188 -83031595 - Lx LINE L1 0 6654 5737 8 1169 277 263 18 40 chr3 76568191 76568334 -83031449 + Lx8 LINE L1 4493 4634 -1506 8 1169 387 0 0 0 chr3 76568335 76568378 -83031405 + (CA)n Simple_repeat Simple_repeat 2 44 0 8 1169 441 0 0 0 chr3 76568378 76568426 -83031357 + (GA)n Simple_repeat Simple_repeat 2 50 0 8 1169 189 94 0 0 chr3 76568522 76568554 -83031229 + (CA)n Simple_repeat Simple_repeat 1 32 0 8 1169 528 301 60 5 chr3 76568563 76568780 -83031003 + L1_Mur3 LINE L1 4837 5065 -815 8 1169 980 285 67 28 chr3 76568787 76569298 -83030485 + Lx8 LINE L1 5277 5795 -496 8 1169 22 0 0 0 chr3 76569298 76569320 -83030463 + AT_rich Low_complexity Low_complexity 1 22 0 8 1169 328 356 125 14 chr3 76569813 76570021 -83029762 + HAL1-3A_ME LINE L1 1974 2204 -654 9 1169 1041 106 6 16 chr3 76570023 76570205 -83029578 + (GGGAGA)n Simple_repeat Simple_repeat 1 180 0 9 1169 603 314 199 22 chr3 76570241 76570648 -83029135 + Lx8 LINE L1 6226 6704 -769 8 1169 2490 94 71 37 chr3 76570648 76571055 -83028728 + BGLII LTR ERVK 1 421 0 9 1169 583 80 0 0 chr3 76571456 76571544 -83028239 + RMER3D-int LTR ERVK 489 564 -2278 9 1169 630 202 72 52 chr3 76571559 76571687 -83028096 + RMER3D-int LTR ERVK 652 786 -2056 9 1169 3086 17 0 0 chr3 76571687 76572032 -83027751 - ORR1A0 LTR MaLR -1 345 1 9 1169 630 202 72 52 chr3 76572032 76572096 -83027687 + RMER3D-int LTR ERVK 787 848 -1994 9 1169 609 202 37 27 chr3 76572129 76572420 -83027363 + RMER3D-int LTR ERVK 354 838 -2004 9 1169 2372 189 35 37 chr3 76572426 76572966 -83026817 + RMER3D-int LTR ERVK 1156 1694 -1148 9 1169 1348 155 16 68 chr3 76572967 76573278 -83026505 + RMER3D-int LTR ERVK 1925 2219 -623 9 1169 259 106 43 0 chr3 76573315 76573362 -83026421 + RMER3D-int LTR ERVK 2277 2325 -1 9 1169 2907 96 10 5 chr3 76573363 76573781 -83026002 + BGLII LTR ERVK 1 420 -1 9 1169 1127 350 50 46 chr3 76573782 76574358 -83025425 + Lx8 LINE L1 6699 7277 -196 8 1169 288 0 0 0 chr3 76574358 76574390 -83025393 + (CA)n Simple_repeat Simple_repeat 1 32 0 9 1169 1127 350 50 46 chr3 76574390 76574576 -83025207 + Lx8 LINE L1 7278 7464 -9 8 1169 24 53 0 0 chr3 76576131 76576169 -83023614 + AT_rich Low_complexity Low_complexity 1 38 0 9 1169 276 30 0 0 chr3 76576444 76576477 -83023306 + (CA)n Simple_repeat Simple_repeat 2 34 0 9 1169 544 87 0 21 chr3 76576716 76576810 -83022973 + (TA)n Simple_repeat Simple_repeat 2 93 0 1 1169 30 45 0 0 chr3 76576895 76576939 -83022844 + AT_rich Low_complexity Low_complexity 1 44 0 1 1169 330 87 0 0 chr3 76578310 76578356 -83021427 + (A)n Simple_repeat Simple_repeat 1 46 0 1 1169 441 0 0 0 chr3 76578385 76578434 -83021349 + (T)n Simple_repeat Simple_repeat 1 49 0 1 1169 1184 316 42 25 chr3 76579693 76580218 -83019565 - RLTR20A2 LTR ERVK 0 578 45 1 1169 324 328 31 29 chr3 76580430 76580559 -83019224 - B1F SINE Alu -1 119 3 1 1169 4079 86 0 18 chr3 76580577 76581132 -83018651 - L1_Mus2 LINE L1 0 6566 6022 1 1169 356 371 33 9 chr3 76581172 76581384 -83018399 - L1M2 LINE L1 -917 5226 5010 1 1169 1640 222 42 30 chr3 76581385 76581785 -83017998 - MTB_Mm LTR MaLR 0 407 3 1 1169 631 233 132 53 chr3 76581787 76582090 -83017693 - MTB_Mm-int LTR MaLR 0 1098 772 1 1169 5383 159 40 18 chr3 76582360 76583778 -83016005 + L1VL4 LINE L1 510 1967 -1592 1 1169 1506 234 89 51 chr3 76583778 76584228 -83015555 - MTB_Mm-int LTR MaLR -791 467 1 1 1169 1459 178 163 17 chr3 76584228 76584572 -83015211 - MTB_Mm LTR MaLR 0 394 1 1 1169 785 271 110 45 chr3 76584573 76584929 -83014854 - L1_Mur3 LINE L1 -899 4981 4603 1 1169 1092 353 36 16 chr3 76584968 76585530 -83014253 + Lx8 LINE L1 6230 6802 -671 1 1169 252 0 0 0 chr3 76585546 76585574 -83014209 + (TG)n Simple_repeat Simple_repeat 2 29 0 1 1169 250 189 89 54 chr3 76585576 76585632 -83014151 + Lx8 LINE L1 7159 7216 -257 1 1169 444 279 123 65 chr3 76586028 76586304 -83013479 + Lx8 LINE L1 7177 7468 -5 1 1169 1361 305 9 24 chr3 76586487 76586954 -83012829 - Lx6 LINE L1 0 7460 7001 1 1169 693 0 0 0 chr3 76587038 76587115 -83012668 + (GA)n Simple_repeat Simple_repeat 2 78 0 1 1169 245 194 18 64 chr3 76588678 76588728 -83011055 + A-rich Low_complexity Low_complexity 4 51 0 1 1169 465 307 29 0 chr3 76588728 76588868 -83010915 + B1_Mur2 SINE Alu 1 144 -5 1 1169 940 145 14 0 chr3 76588877 76589022 -83010761 + B1_Mus1 SINE Alu 1 147 -1 1 1169 245 264 7 25 chr3 76589022 76589101 -83010682 + A-rich Low_complexity Low_complexity 1 77 0 1 1169 22 80 0 0 chr3 76589463 76589513 -83010270 + AT_rich Low_complexity Low_complexity 1 50 0 1 1169 449 252 109 0 chr3 76590909 76591028 -83008755 + B1_Mus2 SINE Alu 11 142 -5 1 1169 186 70 25 101 chr3 76591251 76591330 -83008453 + T-rich Low_complexity Low_complexity 2 74 0 1 1169 307 323 106 35 chr3 76591427 76591597 -83008186 + B3A SINE B2 1 182 -16 1 1169 24 32 0 0 chr3 76591612 76591643 -83008140 + AT_rich Low_complexity Low_complexity 1 31 0 1 1169 241 291 43 60 chr3 76592081 76592198 -83007585 - PB1D9 SINE Alu -2 118 4 1 1169 1138 311 34 0 chr3 76592357 76592685 -83007098 - MTE2b LTR MaLR -30 349 11 1 1169 5333 152 10 1 chr3 76592866 76593770 -83006013 - Lx2 LINE L1 0 6997 6086 1 1169 249 40 19 57 chr3 76594808 76594861 -83004922 + (CAAAAA)n Simple_repeat Simple_repeat 4 54 0 1 1169 1617 141 124 0 chr3 76596566 76596856 -83002927 + IAPEY3_LTR LTR ERVK 1 326 -6 1 1169 815 131 26 46 chr3 76596860 76597012 -83002771 + IAPEY3-int LTR ERVK 1 149 -7531 1 1169 787 152 89 38 chr3 76597021 76597318 -83002465 + IAPEY3-int LTR ERVK 558 952 -6629 1 1169 1669 197 115 24 chr3 76597430 76597933 -83001850 + RMER16-int LTR ERVK 192 662 -5475 1 1169 317 154 58 0 chr3 76597925 76597977 -83001806 + RMER16-int LTR ERVK 950 1004 -983 1 1169 276 313 36 35 chr3 76597993 76598227 -83001556 + RMER16-int LTR ERVK 822 940 -5602 1 1169 319 193 0 0 chr3 76598373 76598430 -83001353 + IAP-d-int LTR ERVK 447 503 -6039 1 1169 1438 103 112 0 chr3 76598430 76598653 -83001130 + IAP-d-int LTR ERVK 5007 5254 -1288 1 1169 1645 135 13 0 chr3 76598654 76598967 -83000816 + IAPEY3-int LTR ERVK 6965 7307 -373 1 1169 1339 210 55 15 chr3 76599002 76599345 -83000438 + IAP-d-int LTR ERVK 6125 6481 0 1 1169 1540 145 128 0 chr3 76599345 76599635 -83000148 + IAPEY3_LTR LTR ERVK 1 327 -5 1 1169 253 286 45 45 chr3 76600540 76600650 -82999133 + MLT1A1 LTR MaLR 299 408 0 1 1169 252 0 0 0 chr3 76600923 76600951 -82998832 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 1 1169 1070 291 115 21 chr3 76602087 76602470 -82997313 + MTD LTR MaLR 1 419 0 1 1169 7676 61 2 2 chr3 76602580 76604080 -82995703 - L1Md_F2 LINE L1 -13 6569 5072 1 1169 5570 78 3 1 chr3 76604080 76604838 -82994945 + L1Md_F2 LINE L1 4326 5084 -799 1 1169 306 50 0 0 chr3 76605929 76605969 -82993814 + (TTG)n Simple_repeat Simple_repeat 1 40 0 1 1169 216 0 0 0 chr3 76605988 76606012 -82993771 + (T)n Simple_repeat Simple_repeat 1 24 0 1 1169 31 26 0 0 chr3 76606252 76606290 -82993493 + AT_rich Low_complexity Low_complexity 1 38 0 1 1169 226 195 0 0 chr3 76607179 76607220 -82992563 - PB1D7 SINE Alu -71 49 9 1 1169 2876 215 110 19 chr3 76607280 76608643 -82991140 - Lx4B LINE L1 -4 7046 5534 1 1169 3266 216 24 13 chr3 76608652 76609329 -82990454 - Lx2B LINE L1 -116 6884 6201 1 1169 9743 181 23 76 chr3 76609336 76609930 -82989853 - Lx4B LINE L1 -525 5352 4901 1 1169 1071 44 0 0 chr3 76609930 76610067 -82989716 + (TTAGGC)n Simple_repeat Simple_repeat 1 137 0 1 1169 9743 181 23 76 chr3 76610067 76611498 -82988285 - Lx4B LINE L1 -977 4900 3458 1 1169 4488 98 19 78 chr3 76611498 76612296 -82987487 - RMER17A LTR ERVK 0 751 1 1 1169 5802 180 21 14 chr3 76612296 76612728 -82987055 - Lx4B LINE L1 -2420 3457 3025 1 1169 4155 187 54 18 chr3 76612724 76613564 -82986219 - Lx2B LINE L1 -5 6995 6126 1 1169 1945 200 37 15 chr3 76613554 76614015 -82985768 - Lx4B LINE L1 -3974 1903 1433 1 1169 515 16 16 0 chr3 76614017 76614081 -82985702 + (TC)n Simple_repeat Simple_repeat 2 66 0 1 1169 5264 154 38 8 chr3 76614097 76615019 -82984764 - Lx3B LINE L1 -2 6971 6022 1 1169 3811 220 16 14 chr3 76615027 76615883 -82983900 - L1_Mur2 LINE L1 -272 5605 4748 1 1169 195 42 0 0 chr3 76615895 76615919 -82983864 + (TTTTG)n Simple_repeat Simple_repeat 4 27 0 1 1169 721 249 38 75 chr3 76615944 76616157 -82983626 + ORR1D1 LTR MaLR 170 374 0 1 1169 201 243 0 0 chr3 76618018 76618055 -82981728 + (CAA)n Simple_repeat Simple_repeat 3 39 0 1 1169 784 296 16 0 chr3 76618081 76618270 -82981513 + B3 SINE B2 14 205 -11 1 1169 204 40 0 0 chr3 76618282 76618307 -82981476 + (CAAA)n Simple_repeat Simple_repeat 4 28 0 1 1169 550 251 2 0 chr3 76618316 76618463 -82981320 + B1_Mus1 SINE Alu 2 150 0 1 1169 516 237 0 0 chr3 76618463 76618615 -82981168 + GA-rich Low_complexity Low_complexity 1 152 0 1 1169 414 0 0 0 chr3 76619201 76619247 -82980536 + (TA)n Simple_repeat Simple_repeat 2 47 0 1 1169 225 0 0 0 chr3 76619248 76619273 -82980510 + (GA)n Simple_repeat Simple_repeat 1 25 0 1 1169 598 338 0 0 chr3 76620283 76620434 -82979349 - Lx8 LINE L1 -180 7293 7143 1 1169 24 53 0 0 chr3 76621415 76621453 -82978330 + AT_rich Low_complexity Low_complexity 1 38 0 1 1169 817 215 71 27 chr3 76621478 76621703 -82978080 - Lx5 LINE L1 0 7050 6816 1 1169 207 0 0 0 chr3 76622639 76622662 -82977121 + (TTG)n Simple_repeat Simple_repeat 2 24 0 1 1169 2297 123 75 0 chr3 76622899 76623274 -82976509 + Lx LINE L1 6244 6646 -8 1 1169 1287 99 15 40 chr3 76623580 76623780 -82976003 + B2_Mm2 SINE B2 1 195 0 1 1169 182 116 23 0 chr3 76623786 76623829 -82975954 + (CAAA)n Simple_repeat Simple_repeat 1 44 0 1 1169 270 350 80 16 chr3 76623830 76623955 -82975828 + B4A SINE B4 43 175 -117 1 1169 263 28 28 0 chr3 76624527 76624563 -82975220 + (CAAAAA)n Simple_repeat Simple_repeat 5 41 0 1 1169 622 304 23 39 chr3 76624696 76624956 -82974827 - Lx9 LINE L1 -392 7252 6997 1 1169 471 270 25 100 chr3 76625043 76625323 -82974460 + Lx9 LINE L1 7384 7642 -2 1 1169 348 263 59 18 chr3 76625333 76625554 -82974229 + L1MA8 LINE L1 5124 5353 -790 1 1169 2196 171 99 2 chr3 76625562 76625985 -82973798 + Lx2 LINE L1 6508 6971 -26 1 1169 27 0 0 0 chr3 76626400 76626427 -82973356 + AT_rich Low_complexity Low_complexity 1 27 0 1 1169 933 152 8 8 chr3 76627151 76627391 -82972392 + GA-rich Low_complexity Low_complexity 1 240 0 1 1169 336 222 10 29 chr3 76627546 76627648 -82972135 + L1MA8 LINE L1 5529 5628 -672 1 1169 514 312 66 29 chr3 76627649 76627996 -82971787 + L1MA8 LINE L1 5792 6151 -140 1 1169 333 0 0 0 chr3 76628278 76628315 -82971468 + (TG)n Simple_repeat Simple_repeat 1 37 0 1 1169 2515 185 139 20 chr3 76628326 76628871 -82970912 + RMER19C LTR ERVK 1 610 -1 1 1169 37 0 0 0 chr3 76630396 76630433 -82969350 + AT_rich Low_complexity Low_complexity 1 37 0 1 1169 307 375 10 0 chr3 76630610 76630706 -82969077 - PB1D10 SINE Alu -8 109 13 1 1169 22 70 0 0 chr3 76630714 76630757 -82969026 + AT_rich Low_complexity Low_complexity 1 43 0 1 1169 24 0 0 0 chr3 76630852 76630876 -82968907 + AT_rich Low_complexity Low_complexity 1 24 0 1 1169 702 302 67 31 chr3 76631651 76632037 -82967746 + MERVL_2A-int LTR ERVL 3490 3889 -1872 1 1169 1397 259 101 13 chr3 76632041 76632417 -82967366 + MTD LTR MaLR 2 410 -9 1 1169 8396 136 17 4 chr3 76632555 76634097 -82965686 + Lx3B LINE L1 5410 6969 -4 1 1169 319 318 45 40 chr3 76634153 76634330 -82965453 - L1MC LINE L1 -1018 5128 4951 1 1169 350 288 48 110 chr3 76634430 76634507 -82965276 - L1MC LINE L1 -1348 4798 4726 1 1169 688 179 25 6 chr3 76634507 76634664 -82965119 + Lx LINE L1 6493 6652 -2 1 1169 350 288 48 110 chr3 76634664 76635003 -82964780 - L1MC LINE L1 -1421 4725 4408 1 1169 414 370 25 41 chr3 76635141 76635338 -82964445 - B3A SINE B2 -1 197 4 1 1169 633 285 98 41 chr3 76635344 76635453 -82964330 - L1MC LINE L1 -1820 4326 4224 1 1169 1979 97 4 0 chr3 76635453 76635731 -82964052 - L1_Mus2 LINE L1 -5 6561 6283 1 1169 633 285 98 41 chr3 76635731 76636181 -82963602 - L1MC LINE L1 -1923 4223 3735 1 1169 250 298 87 48 chr3 76636313 76636704 -82963079 - Lx8 LINE L1 -1305 6168 5727 1 1169 350 250 0 24 chr3 76636711 76636793 -82962990 + Lx7 LINE L1 6942 7021 -675 1 1169 3250 29 0 0 chr3 76637386 76637766 -82962017 - L1Md_T LINE L1 -361 6221 5842 1 1169 2412 59 0 0 chr3 76637766 76638136 -82961647 + L1Md_T LINE L1 6278 6582 0 1 1169 2073 193 17 0 chr3 76640661 76641023 -82958760 + MTC LTR MaLR 5 372 -49 1 1169 581 221 0 0 chr3 76641031 76641144 -82958639 - ORR1C1 LTR MaLR -265 113 1 1 1169 25 51 0 0 chr3 76641153 76641192 -82958591 + AT_rich Low_complexity Low_complexity 1 39 0 1 1169 3738 269 70 30 chr3 76641305 76642557 -82957226 - Lx7 LINE L1 -335 7361 6061 1 1169 1132 261 68 3 chr3 76642670 76642978 -82956805 - RMER15 LTR ERVL -50 525 198 1 1169 353 258 104 47 chr3 76643107 76643445 -82956338 + L1M4 LINE L1 4132 4488 -1658 1 1169 312 137 0 0 chr3 76644993 76645044 -82954739 + (A)n Simple_repeat Simple_repeat 1 51 0 1 1169 24 0 0 0 chr3 76646086 76646110 -82953673 + AT_rich Low_complexity Low_complexity 1 24 0 1 1169 1738 30 0 10 chr3 76646702 76646899 -82952884 + L1_Mm LINE L1 5390 5586 -297 1 1169 6680 87 34 9 chr3 76646899 76647871 -82951912 + L1Md_F2 LINE L1 5587 6582 0 1 1169 21 0 0 0 chr3 76648161 76648182 -82951601 + AT_rich Low_complexity Low_complexity 1 21 0 1 1169 1114 95 0 0 chr3 76648448 76648595 -82951188 + B1_Mm SINE Alu 1 147 0 2 1169 315 0 0 0 chr3 76649076 76649111 -82950672 + (CA)n Simple_repeat Simple_repeat 1 35 0 2 1169 873 29 0 0 chr3 76650436 76650540 -82949243 + (TTC)n Simple_repeat Simple_repeat 2 105 0 2 1169 446 159 0 11 chr3 76651786 76651875 -82947908 + (CATATA)n Simple_repeat Simple_repeat 2 89 0 2 1169 213 173 0 37 chr3 76652184 76652238 -82947545 + T-rich Low_complexity Low_complexity 4 55 0 2 1169 360 285 69 8 chr3 76652919 76653050 -82946733 + MLT2E LTR ERVL 486 624 -4 2 1169 207 256 12 49 chr3 76653339 76653421 -82946362 + CT-rich Low_complexity Low_complexity 3 81 0 2 1169 1156 204 50 161 chr3 76653424 76653845 -82945938 + ORR1C1 LTR MaLR 5 378 0 2 1169 833 195 163 0 chr3 76653988 76654178 -82945605 + URR1B DNA MER1_type 5 225 0 2 1169 3035 16 19 84 chr3 76654215 76654630 -82945153 + RLTR10 LTR ERVK 1 388 -2 2 1169 13078 26 4 1 chr3 76654632 76656508 -82943275 + RLTR10-int LTR ERVK 1 1984 -3 2 1169 3045 16 19 80 chr3 76656510 76656923 -82942860 + RLTR10 LTR ERVK 1 388 -2 2 1169 396 0 0 0 chr3 76657187 76657231 -82942552 + (CA)n Simple_repeat Simple_repeat 1 44 0 2 1169 2784 67 0 0 chr3 76658500 76658857 -82940926 - L1_Mus3 LINE L1 -355 6283 5927 2 1169 2560 85 26 0 chr3 76658857 76659209 -82940574 + L1_Mus3 LINE L1 6274 6634 -4 2 1169 1494 245 30 0 chr3 76661028 76661396 -82938387 - RLTR30 LTR ERV1 0 379 1 2 1169 707 340 67 17 chr3 76661682 76662049 -82937734 + Lx6 LINE L1 7001 7275 -185 2 1169 1789 224 20 16 chr3 76662361 76662809 -82936974 + RMER6D LTR ERVK 1 450 -270 2 1169 537 173 0 0 chr3 76662809 76662965 -82936818 + (CA)n Simple_repeat Simple_repeat 1 156 0 2 1169 1457 171 27 10 chr3 76662973 76663268 -82936515 + RMER6C LTR ERVK 391 690 0 2 1169 23 0 0 0 chr3 76663462 76663485 -82936298 + AT_rich Low_complexity Low_complexity 1 23 0 2 1169 1933 58 0 0 chr3 76664229 76664471 -82935312 - L1_Mus1 LINE L1 -536 6031 5790 2 1169 4101 68 9 7 chr3 76664474 76665021 -82934762 + L1_Mus1 LINE L1 6020 6567 0 2 1169 7712 195 38 16 chr3 76665054 76666940 -82932843 + Lx5 LINE L1 4045 5983 -1067 2 1169 3441 236 62 35 chr3 76666918 76667823 -82931960 + Lx5 LINE L1 6091 7047 -3 2 1169 35 24 0 0 chr3 76667826 76667868 -82931915 + AT_rich Low_complexity Low_complexity 1 42 0 2 1169 335 211 11 0 chr3 76668061 76668151 -82931632 + G-rich Low_complexity Low_complexity 2 92 0 2 1169 327 146 0 0 chr3 76669743 76669798 -82929985 + (TG)n Simple_repeat Simple_repeat 2 56 0 2 1169 365 304 149 51 chr3 76670581 76670896 -82928887 + MLT1A0 LTR MaLR 1 346 -19 2 1169 593 245 6 44 chr3 76672567 76672725 -82927058 + Lx6 LINE L1 6391 6542 -918 2 1169 379 118 32 0 chr3 76672726 76672819 -82926964 + (TTTG)n Simple_repeat Simple_repeat 1 96 0 2 1169 1047 90 7 0 chr3 76672820 76672964 -82926819 - B1_Mus2 SINE Alu -2 145 1 2 1169 782 220 103 19 chr3 76672971 76673184 -82926599 + Lx6 LINE L1 6519 6749 -711 2 1169 338 57 0 19 chr3 76673197 76673251 -82926532 + (CAAAA)n Simple_repeat Simple_repeat 3 55 0 2 1169 342 317 65 12 chr3 76673273 76673442 -82926341 + Arthur1 DNA Tip100 2808 2985 -962 2 1169 605 196 35 0 chr3 76673464 76673607 -82926176 + Lx6 LINE L1 7308 7455 -5 2 1169 3702 118 5 27 chr3 76674099 76674698 -82925085 + L1_Mus4 LINE L1 6047 6632 -4 2 1169 210 71 0 0 chr3 76675816 76675844 -82923939 + (CA)n Simple_repeat Simple_repeat 1 28 0 2 1169 789 302 67 19 chr3 76676274 76676588 -82923195 - RMER5 LTR ERV1 -173 361 33 2 1169 580 268 66 14 chr3 76676649 76676861 -82922922 - L1_Rod LINE L1 -10 5837 5615 2 146 656 320 69 54 chr3 76676857 76677614 -82922169 + L1M3 LINE L1 4290 5057 -1083 2 1170 306 0 0 0 chr3 76677881 76677915 -82921868 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 2 1170 398 204 11 0 chr3 76678604 76678697 -82921086 + (TTTA)n Simple_repeat Simple_repeat 4 97 0 2 1170 592 354 52 60 chr3 76679753 76679867 -82919916 + Arthur1 DNA Tip100 710 828 -3119 2 1170 5331 33 2 0 chr3 76679867 76680502 -82919281 - L1Md_T LINE L1 0 6582 5947 2 1170 592 354 52 60 chr3 76680502 76680694 -82919089 + Arthur1 DNA Tip100 829 1018 -2929 2 1170 1106 66 0 0 chr3 76680694 76680831 -82918952 + B1_Mm SINE Alu 1 137 -10 2 1170 592 354 52 60 chr3 76680831 76680846 -82918937 + Arthur1 DNA Tip100 1019 1028 -2919 2 1170 425 18 35 0 chr3 76680846 76680903 -82918880 + (TAAA)n Simple_repeat Simple_repeat 2 60 0 2 1170 592 354 52 60 chr3 76680903 76681083 -82918700 + Arthur1 DNA Tip100 1029 1209 -2738 2 1170 333 118 0 0 chr3 76682788 76682839 -82916944 + (TTTG)n Simple_repeat Simple_repeat 2 52 0 2 1170 570 221 13 33 chr3 76686900 76687050 -82912733 + B1_Mur4 SINE Alu 2 148 -2 2 1170 306 233 9 37 chr3 76687051 76687105 -82912678 + (CAAA)n Simple_repeat Simple_repeat 1 52 0 2 1170 588 264 0 13 chr3 76687105 76687255 -82912528 + B1_Mus1 SINE Alu 1 148 0 2 1170 306 233 9 37 chr3 76687255 76687307 -82912476 + (CAAA)n Simple_repeat Simple_repeat 1 52 0 2 1170 404 194 0 7 chr3 76687552 76687687 -82912096 + CT-rich Low_complexity Low_complexity 1 134 0 2 1170 408 309 77 20 chr3 76687755 76688003 -82911780 + L1M2 LINE L1 3277 3538 -2605 2 1170 444 150 0 0 chr3 76688004 76688084 -82911699 + (TA)n Simple_repeat Simple_repeat 2 81 0 2 1170 189 0 0 0 chr3 76688086 76688107 -82911676 + (TAGA)n Simple_repeat Simple_repeat 2 22 0 2 1170 399 295 66 0 chr3 76688110 76688337 -82911446 + L1M2 LINE L1 3553 3794 -2349 2 1170 6671 154 21 2 chr3 76689269 76690471 -82909312 + MusHAL1 LINE L1 866 2091 -621 2 1170 4409 16 0 0 chr3 76690471 76690964 -82908819 + MT2_Mm LTR ERVL 1 493 0 2 1170 46955 18 8 0 chr3 76690970 76696281 -82903502 + MERVL-int LTR ERVL 7 5360 -125 2 1170 392 167 46 35 chr3 76696281 76696368 -82903415 + ORR1A3-int LTR MaLR 553 640 -1323 2 1170 314 0 0 0 chr3 76696368 76696406 -82903377 + MERVL-int LTR ERVL 5448 5485 0 2 1170 4385 18 0 0 chr3 76696406 76696899 -82902884 + MT2_Mm LTR ERVL 1 493 0 2 1170 11866 193 24 25 chr3 76696902 76698497 -82901286 + Lx2 LINE L1 3288 4861 -1016 2 1170 4719 95 3 8 chr3 76698497 76699163 -82900620 - Lx3_Mus LINE L1 0 7009 6347 2 1170 11866 175 17 13 chr3 76699163 76701201 -82898582 + Lx2 LINE L1 4862 6932 -65 2 1170 27 49 0 0 chr3 76701532 76701573 -82898210 + AT_rich Low_complexity Low_complexity 1 41 0 2 1170 1460 54 0 5 chr3 76701582 76701769 -82898014 - L1_Mus1 LINE L1 -10 6557 6372 2 1170 387 165 187 0 chr3 76701928 76702019 -82897764 + ORR1A4 LTR MaLR 214 321 -8 2 1170 23 33 0 0 chr3 76702203 76702233 -82897550 + AT_rich Low_complexity Low_complexity 1 30 0 2 1170 21 36 0 0 chr3 76702925 76702953 -82896830 + AT_rich Low_complexity Low_complexity 1 28 0 2 1170 235 255 39 0 chr3 76703116 76703167 -82896616 + ID SINE ID 2 54 -170 2 1170 5404 203 83 15 chr3 76704015 76705654 -82894129 - Lx5 LINE L1 -7 7043 5317 2 1170 498 246 61 6 chr3 76705590 76705770 -82894013 + Lx7 LINE L1 7507 7696 0 2 1170 2080 165 12 8 chr3 76705895 76706297 -82893486 - L1_Mur2 LINE L1 -516 5361 4958 2 1170 7311 126 18 0 chr3 76706301 76707444 -82892339 + L1_Mm LINE L1 3819 4982 -901 2 1170 294 236 0 0 chr3 76707444 76707499 -82892284 - RLTR26 LTR ERVK -1 641 587 2 1170 1016 153 30 0 chr3 76707500 76707703 -82892080 - MusHAL1 LINE L1 -648 2064 1856 2 1170 229 169 0 33 chr3 76707708 76707769 -82892014 + CT-rich Low_complexity Low_complexity 2 60 0 2 1170 1002 162 0 0 chr3 76707781 76707960 -82891823 + CT-rich Low_complexity Low_complexity 1 179 0 2 1170 7733 192 41 14 chr3 76707970 76709605 -82890178 - L1_Mur2 LINE L1 -2786 3091 1405 2 1170 3992 133 20 40 chr3 76709605 76710372 -82889411 + RMER17A LTR ERVK 1 751 0 2 1170 7733 193 32 16 chr3 76710372 76710883 -82888900 - L1_Mur2 LINE L1 -4473 1404 889 2 1170 358 276 84 38 chr3 76711683 76711919 -82887864 + L1MA7 LINE L1 6046 6290 -22 2 1170 25 0 0 0 chr3 76712322 76712347 -82887436 + AT_rich Low_complexity Low_complexity 1 25 0 2 1170 198 0 0 0 chr3 76712347 76712369 -82887414 + (TTAA)n Simple_repeat Simple_repeat 2 23 0 2 1170 338 86 35 0 chr3 76714749 76714807 -82884976 + (CCCCCT)n Simple_repeat Simple_repeat 6 65 0 2 1170 28 0 0 0 chr3 76714828 76714856 -82884927 + AT_rich Low_complexity Low_complexity 1 28 0 2 1170 1628 150 52 7 chr3 76714857 76715146 -82884637 - Lx3A LINE L1 -13 6968 6667 2 1170 4194 84 2 0 chr3 76715367 76715948 -82883835 - L1_Mm LINE L1 -1638 4245 3664 2 1170 7599 60 4 0 chr3 76715951 76716921 -82882862 + L1Md_F2 LINE L1 5597 6570 -12 2 1170 216 86 0 0 chr3 76717006 76717041 -82882742 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 2 1170 24 0 0 0 chr3 76718188 76718212 -82881571 + AT_rich Low_complexity Low_complexity 1 24 0 2 1170 4808 115 49 1 chr3 76718213 76718947 -82880836 - Lx3A LINE L1 -5 6976 6208 2 1170 388 269 44 53 chr3 76719068 76719182 -82880601 + ID_B1 SINE B4 107 219 -5 2 1170 354 123 0 0 chr3 76719182 76719239 -82880544 + (CA)n Simple_repeat Simple_repeat 2 58 0 2 1170 28 0 0 0 chr3 76719272 76719300 -82880483 + AT_rich Low_complexity Low_complexity 1 28 0 2 1170 2403 52 7 3 chr3 76719966 76720273 -82879510 - L1Md_F3 LINE L1 -2 6582 6275 2 1170 7103 70 43 3 chr3 76720273 76721259 -82878524 + L1_Mm LINE L1 3651 4675 -1208 2 1170 205 186 0 0 chr3 76722283 76722326 -82877457 + T-rich Low_complexity Low_complexity 1 43 0 2 1170 309 26 0 0 chr3 76722326 76722364 -82877419 + (GCTTG)n Simple_repeat Simple_repeat 1 38 0 2 1170 2658 89 39 3 chr3 76722364 76722746 -82877037 + MTA_Mm LTR MaLR 1 396 0 2 1170 1566 345 110 49 chr3 76722819 76723815 -82875968 - ORR1E-int LTR MaLR -521 1059 3 2 1170 1114 261 41 90 chr3 76723829 76724195 -82875588 - ORR1E LTR MaLR -11 348 1 2 1170 189 0 0 0 chr3 76724253 76724274 -82875509 + (A)n Simple_repeat Simple_repeat 1 21 0 2 1170 385 74 45 36 chr3 76724682 76724794 -82874989 + (CAAA)n Simple_repeat Simple_repeat 2 114 0 2 1170 315 304 0 11 chr3 76727300 76727393 -82872390 + B1_Mur2 SINE Alu 58 149 0 2 1170 852 325 64 45 chr3 76727562 76728046 -82871737 + RMER5 LTR ERV1 42 534 0 2 1170 1461 27 15 66 chr3 76728416 76728614 -82871169 + B2_Mm1a SINE B2 1 188 -5 2 1170 192 311 153 53 chr3 76728793 76728983 -82870800 - MIRb SINE MIR -39 229 21 2 1170 213 205 0 0 chr3 76729074 76729113 -82870670 + GA-rich Low_complexity Low_complexity 2 40 0 2 1170 2218 266 51 32 chr3 76729517 76729777 -82870006 + RMER1C Other Other 641 910 -432 2 1170 3059 60 8 0 chr3 76729777 76730174 -82869609 + MTB LTR MaLR 1 400 0 2 1170 2218 266 51 32 chr3 76730174 76730307 -82869476 + RMER1C Other Other 911 1035 -307 2 1170 459 93 0 0 chr3 76730307 76730382 -82869401 + Lx LINE L1 6580 6654 0 2 1170 2218 266 51 32 chr3 76730382 76730675 -82869108 + RMER1C Other Other 1036 1340 -2 2 1170 487 279 0 114 chr3 76730833 76730999 -82868784 - B1_Mur3 SINE Alu -2 147 1 2 1170 222 37 0 0 chr3 76732154 76732181 -82867602 + (TG)n Simple_repeat Simple_repeat 2 28 0 3 1170 706 313 73 27 chr3 76732194 76732562 -82867221 - RMER5 LTR ERV1 -38 496 112 3 1170 936 27 0 0 chr3 76733012 76733123 -82866660 + (TTC)n Simple_repeat Simple_repeat 1 111 0 3 1170 515 268 48 27 chr3 76733150 76733338 -82866445 - L1MA6 LINE L1 -38 6262 6071 3 1170 226 329 38 38 chr3 76734196 76734275 -82865508 + ID SINE ID 4 82 -142 3 1170 31 26 0 0 chr3 76734631 76734669 -82865114 + AT_rich Low_complexity Low_complexity 1 38 0 3 1170 289 353 50 66 chr3 76735783 76735965 -82863818 + MER106A DNA MER1_type 6 184 -52 3 1170 450 0 0 0 chr3 76736407 76736457 -82863326 + (TTA)n Simple_repeat Simple_repeat 2 51 0 3 1170 503 296 6 12 chr3 76736457 76736618 -82863165 - Lx6 LINE L1 -43 7417 7258 3 1170 785 242 50 60 chr3 76736622 76736904 -82862879 - L1_Mur3 LINE L1 -1338 4542 4264 3 1170 994 128 0 7 chr3 76736939 76737088 -82862695 + B1_Mus1 SINE Alu 1 148 0 3 1170 206 118 0 0 chr3 76737192 76737226 -82862557 + (TTA)n Simple_repeat Simple_repeat 3 36 0 3 1170 1663 256 8 19 chr3 76738721 76739099 -82860684 - ORR1D1 LTR MaLR 0 374 1 3 1170 462 81 116 0 chr3 76739641 76739727 -82860056 - L1Md_F2 LINE L1 0 6582 6487 3 1170 2059 59 8 0 chr3 76739727 76739983 -82859800 + L1Md_F2 LINE L1 6137 6394 -188 3 1170 324 102 0 0 chr3 76740179 76740228 -82859555 + (A)n Simple_repeat Simple_repeat 1 49 0 3 1170 1275 242 40 97 chr3 76741218 76741662 -82858121 - MTC LTR MaLR -2 419 1 3 1170 2104 141 66 8 chr3 76742281 76742660 -82857123 + Lx2 LINE L1 6595 6995 -2 3 1170 432 0 0 0 chr3 76743305 76743353 -82856430 + (TA)n Simple_repeat Simple_repeat 2 49 0 3 1170 662 0 13 0 chr3 76743353 76743430 -82856353 + (TG)n Simple_repeat Simple_repeat 2 80 0 3 1170 248 0 31 0 chr3 76744136 76744168 -82855615 + (TTG)n Simple_repeat Simple_repeat 2 34 0 3 1170 1184 305 41 10 chr3 76744450 76744844 -82854939 + MTD LTR MaLR 1 406 -13 3 1170 216 97 0 0 chr3 76745550 76745581 -82854202 + (TAA)n Simple_repeat Simple_repeat 1 31 0 3 1170 219 154 0 0 chr3 76746050 76746089 -82853694 + A-rich Low_complexity Low_complexity 1 39 0 3 1170 438 318 109 29 chr3 76746225 76746400 -82853383 + B3A SINE B2 9 197 -1 3 1170 216 0 0 0 chr3 76746610 76746634 -82853149 + (GA)n Simple_repeat Simple_repeat 2 25 0 3 1170 269 314 31 71 chr3 76746657 76746784 -82852999 + MLT1A LTR MaLR 13 134 -274 3 1170 195 42 0 0 chr3 76746807 76746831 -82852952 + (TC)n Simple_repeat Simple_repeat 1 24 0 3 1170 479 333 100 19 chr3 76746924 76747285 -82852498 + MLT1A-int LTR MaLR 203 592 -779 3 1170 23 54 0 0 chr3 76748191 76748228 -82851555 + AT_rich Low_complexity Low_complexity 1 37 0 3 1170 25 31 0 0 chr3 76749262 76749294 -82850489 + AT_rich Low_complexity Low_complexity 1 32 0 3 1170 226 254 67 90 chr3 76749697 76749831 -82849952 - BC1_Mm scRNA scRNA -12 140 10 3 1170 257 267 152 0 chr3 76749881 76749986 -82849797 + L1MEf LINE L1 1804 1924 -4276 3 1170 3805 63 8 0 chr3 76750505 76750994 -82848789 + L1_Mus1 LINE L1 6074 6566 -1 3 1170 294 29 0 0 chr3 76751012 76751047 -82848736 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 3 1170 429 258 91 26 chr3 76751667 76751898 -82847885 - Lx7 LINE L1 0 7696 7451 3 1170 669 86 0 0 chr3 76751907 76752000 -82847783 + (GA)n Simple_repeat Simple_repeat 2 94 0 3 1170 902 138 6 0 chr3 76752046 76752206 -82847577 + (GAAA)n Simple_repeat Simple_repeat 2 162 0 3 1170 464 213 49 42 chr3 76752251 76752393 -82847390 - Lx7 LINE L1 -379 7317 7175 3 1170 349 147 37 36 chr3 76752400 76752515 -82847268 - B1_Mm SINE Alu -2 148 30 3 1170 1006 256 8 0 chr3 76752546 76752784 -82846999 - Lx7 LINE L1 -603 7093 6854 3 1170 2013 143 16 0 chr3 76752785 76753099 -82846684 + ORR1A2 LTR MaLR 1 319 -8 3 1170 862 285 312 13 chr3 76753485 76753741 -82846042 - Lx6 LINE L1 -362 7098 6768 3 1170 906 36 0 0 chr3 76753741 76753851 -82845932 + (TTTCG)n Simple_repeat Simple_repeat 4 113 0 3 1170 862 297 34 11 chr3 76753851 76754093 -82845690 - Lx6 LINE L1 -693 6767 6518 3 1170 1940 266 31 18 chr3 76754092 76754665 -82845118 - Lx6 LINE L1 -1293 6167 5587 3 1170 333 0 0 0 chr3 76754691 76754728 -82845055 + (TG)n Simple_repeat Simple_repeat 2 38 0 3 1170 6258 55 4 4 chr3 76754735 76755540 -82844243 - L1Md_F2 LINE L1 -2 6580 5776 3 1170 9235 35 0 0 chr3 76755540 76756648 -82843135 + L1Md_F2 LINE L1 4668 5775 -108 3 1170 1924 202 70 37 chr3 76756643 76757127 -82842656 - Lx6 LINE L1 -307 5573 5074 3 1170 1599 10 0 0 chr3 76758928 76759132 -82840651 + (GAA)n Simple_repeat Simple_repeat 1 204 0 3 1170 180 182 0 0 chr3 76759173 76759217 -82840566 + GA-rich Low_complexity Low_complexity 2 45 0 3 1170 318 311 94 35 chr3 76759325 76759528 -82840255 + ID_B1 SINE B4 2 216 -8 3 1170 21 57 0 0 chr3 76759597 76759632 -82840151 + AT_rich Low_complexity Low_complexity 1 35 0 3 1170 621 188 43 0 chr3 76759677 76759815 -82839968 + BC1_Mm scRNA scRNA 1 144 -8 3 1170 4372 228 134 17 chr3 76760171 76760666 -82839117 - Lx6 LINE L1 -3057 2823 2270 3 1170 217 0 0 57 chr3 76760666 76760701 -82839082 + (TTTTG)n Simple_repeat Simple_repeat 3 35 0 3 1170 4372 228 134 17 chr3 76760701 76760877 -82838906 - Lx6 LINE L1 -3611 2269 1996 3 1170 723 59 0 0 chr3 76760877 76760978 -82838805 + (TG)n Simple_repeat Simple_repeat 2 102 0 3 1170 4372 218 101 18 chr3 76760978 76761893 -82837890 - Lx6 LINE L1 -3885 1995 1071 3 1170 1674 238 6 0 chr3 76762093 76762442 -82837341 - ORR1B2-int LTR MaLR -1157 352 2 3 1170 1508 225 22 11 chr3 76762443 76762802 -82836981 - ORR1B2 LTR MaLR 0 367 5 3 1170 5876 224 33 31 chr3 76762803 76763090 -82836693 + Lx6 LINE L1 4180 4474 -1406 3 1170 473 0 0 17 chr3 76763090 76763148 -82836635 + (TG)n Simple_repeat Simple_repeat 2 58 0 3 1170 5876 224 33 31 chr3 76763148 76764462 -82835321 + Lx6 LINE L1 4475 5784 -96 3 1170 246 95 0 0 chr3 76764463 76764505 -82835278 + (A)n Simple_repeat Simple_repeat 1 42 0 3 1170 1553 269 68 19 chr3 76764528 76764873 -82834910 + Lx6 LINE L1 5775 6137 -1323 3 1170 342 0 0 0 chr3 76764873 76764911 -82834872 + (TG)n Simple_repeat Simple_repeat 2 39 0 3 1170 1553 260 140 26 chr3 76764911 76765243 -82834540 + Lx6 LINE L1 6138 6506 -954 3 1170 1848 72 7 55 chr3 76765245 76765258 -82834525 + L1_Mus3 LINE L1 6361 6373 -265 3 1170 327 65 0 0 chr3 76765258 76765304 -82834479 + (TAAA)n Simple_repeat Simple_repeat 3 48 0 3 1170 1848 72 7 55 chr3 76765304 76765582 -82834201 + L1_Mus3 LINE L1 6374 6638 0 3 1170 430 194 34 92 chr3 76765591 76765710 -82834073 + Lx9 LINE L1 7333 7444 -200 3 1170 1366 323 49 63 chr3 76765728 76766264 -82833519 + Lx6 LINE L1 6504 7030 -430 3 1170 832 51 26 0 chr3 76766264 76766381 -82833402 + (TAGA)n Simple_repeat Simple_repeat 3 122 0 3 1170 1366 323 49 63 chr3 76766381 76766643 -82833140 + Lx6 LINE L1 7031 7291 -169 3 1170 879 290 4 11 chr3 76766649 76766914 -82832869 - Lx9 LINE L1 -708 6936 6674 3 1170 332 145 51 38 chr3 76767006 76767085 -82832698 + B2_Mm2 SINE B2 107 186 -9 3 1170 1083 57 7 0 chr3 76770526 76770666 -82829117 - B1_Mm SINE Alu -6 141 1 3 1170 21 26 0 26 chr3 76770877 76770898 -82828885 + AT_rich Low_complexity Low_complexity 1 21 0 3 1170 279 0 0 0 chr3 76770898 76770929 -82828854 + (CA)n Simple_repeat Simple_repeat 2 32 0 3 1170 21 26 0 26 chr3 76770929 76770946 -82828837 + AT_rich Low_complexity Low_complexity 1 17 0 3 1170 5807 144 26 3 chr3 76770946 76771939 -82827844 - Lx3A LINE L1 0 6981 5966 3 1170 527 241 22 0 chr3 76771940 76772077 -82827706 - Lx6 LINE L1 -13 7447 7308 3 1170 384 138 12 12 chr3 76772084 76772165 -82827618 - L1_Mur3 LINE L1 -2655 3225 3145 3 1170 1261 235 57 3 chr3 76772166 76772482 -82827301 - RMER1C Other Other 0 1342 1010 3 1170 674 96 10 0 chr3 76772486 76772590 -82827193 + (TC)n Simple_repeat Simple_repeat 2 106 0 3 1170 5052 218 37 7 chr3 76772706 76774239 -82825544 - Lx2B LINE L1 0 7000 5377 3 1170 4113 163 55 16 chr3 76774239 76775064 -82824719 + L1_Mur2 LINE L1 4459 5315 -562 3 1170 6941 93 19 21 chr3 76775062 76776141 -82823642 - L1_Mur1 LINE L1 -2113 3773 2698 3 1170 5392 94 58 71 chr3 76776140 76777106 -82822677 + Lx3_Mus LINE L1 5807 6759 -250 3 1170 2506 199 43 30 chr3 76777238 76777893 -82821890 - L1_Mur3 LINE L1 -3017 2863 2201 3 1170 759 32 0 0 chr3 76778613 76778707 -82821076 + (TG)n Simple_repeat Simple_repeat 2 95 0 3 1170 248 388 17 0 chr3 76779030 76779146 -82820637 + RMER15 LTR ERVL 432 549 -26 3 1170 27 0 0 0 chr3 76779260 76779287 -82820496 + AT_rich Low_complexity Low_complexity 1 27 0 3 1170 37 23 0 0 chr3 76779365 76779409 -82820374 + AT_rich Low_complexity Low_complexity 1 44 0 3 1170 4738 243 43 43 chr3 76779413 76781746 -82818037 - Lx4B LINE L1 -7 7051 4705 3 1170 2378 201 52 30 chr3 76781875 76782399 -82817384 - RMER13A LTR ERVK -180 680 146 3 1170 232 264 0 0 chr3 76782399 76782452 -82817331 - RLTR26 LTR ERVK -372 270 218 3 1170 4391 227 134 46 chr3 76782469 76784065 -82815718 - Lx4B LINE L1 -2703 3174 1438 3 1170 8671 112 21 31 chr3 76784092 76785581 -82814202 - MusHAL1 LINE L1 -1238 1474 1 3 1170 1610 247 17 56 chr3 76785572 76786110 -82813673 - L1Md_F LINE L1 -5471 1048 95 3 1170 642 350 76 60 chr3 76786124 76786571 -82813212 + MTE-int LTR MaLR 311 764 -816 3 1170 27 49 0 0 chr3 76787863 76787904 -82811879 + AT_rich Low_complexity Low_complexity 1 41 0 3 1170 370 285 53 23 chr3 76788373 76788506 -82811277 + Lx8 LINE L1 7206 7342 -131 3 1170 658 292 76 6 chr3 76789368 76789540 -82810243 + B3 SINE B2 5 188 -28 3 1170 741 286 112 18 chr3 76789774 76790112 -82809671 + ORR1D2 LTR MaLR 1 370 0 3 1170 25 0 0 0 chr3 76791206 76791231 -82808552 + AT_rich Low_complexity Low_complexity 1 25 0 3 1170 7995 45 2 10 chr3 76791412 76792919 -82806864 - L1Md_F2 LINE L1 -5 6577 5083 3 1170 1111 64 44 39 chr3 76794832 76795012 -82804771 + L1Md_F3 LINE L1 6404 6584 0 3 1170 3225 141 6 13 chr3 76795305 76795836 -82803947 - Lx2 LINE L1 0 6997 6471 3 1170 285 274 138 34 chr3 76795889 76796157 -82803626 + L1M2 LINE L1 1429 1724 -4156 3 1170 342 0 0 0 chr3 76796677 76796715 -82803068 + (TAAA)n Simple_repeat Simple_repeat 3 40 0 3 1170 215 211 35 0 chr3 76796853 76796910 -82802873 + (TA)n Simple_repeat Simple_repeat 2 60 0 3 1170 320 375 23 23 chr3 76796912 76797133 -82802650 + L1M2 LINE L1 2647 2867 -3276 3 1170 396 0 0 0 chr3 76797235 76797279 -82802504 + (TA)n Simple_repeat Simple_repeat 2 45 0 3 1170 267 322 133 33 chr3 76797387 76797688 -82802095 + L1M2 LINE L1 3189 3536 -2344 3 1170 1674 105 4 11 chr3 76797688 76797948 -82801835 + L1Md_F2 LINE L1 6325 6582 0 3 1170 472 328 125 29 chr3 76797948 76798770 -82801013 + L1M2 LINE L1 3537 4439 -1408 3 1170 2038 74 3 89 chr3 76798788 76799113 -82800670 + L1_Mus2 LINE L1 6270 6566 0 3 1170 22 35 0 0 chr3 76799282 76799311 -82800472 + AT_rich Low_complexity Low_complexity 1 29 0 3 1170 186 43 0 0 chr3 76799519 76799542 -82800241 + (TG)n Simple_repeat Simple_repeat 1 23 0 4 1170 22 0 0 0 chr3 76800307 76800329 -82799454 + AT_rich Low_complexity Low_complexity 1 22 0 4 1170 1648 71 85 12 chr3 76800373 76800631 -82799152 + IAPLTR2_Mm LTR ERVK 1 277 -198 4 1170 1145 208 57 8 chr3 76800633 76800880 -82798903 - Lx3C LINE L1 -54 6922 6664 4 1170 5090 162 67 2 chr3 76800877 76802190 -82797593 + Lx3C LINE L1 4947 6351 -625 4 1170 666 0 0 0 chr3 76802279 76802353 -82797430 + (GA)n Simple_repeat Simple_repeat 1 74 0 4 1170 304 370 48 11 chr3 76802714 76802900 -82796883 + L1MEd LINE L1 466 658 -5461 4 1170 1361 243 170 87 chr3 76803184 76803510 -82796273 + MTC-int LTR MaLR 410 832 -426 4 1170 348 24 0 0 chr3 76803510 76803551 -82796232 + (TG)n Simple_repeat Simple_repeat 2 42 0 4 1170 1361 226 184 66 chr3 76803551 76803900 -82795883 + MTC-int LTR MaLR 833 1258 0 4 1170 1606 239 41 24 chr3 76803900 76804311 -82795472 + MTC LTR MaLR 1 418 -3 4 1170 5541 85 9 3 chr3 76805085 76805848 -82793935 + L1Md_F2 LINE L1 4802 5569 -314 4 1170 7586 69 1 4 chr3 76805849 76806828 -82792955 + L1Md_F2 LINE L1 5593 6568 -14 4 1170 182 83 56 0 chr3 76806834 76806870 -82792913 + (CAAAAA)n Simple_repeat Simple_repeat 5 42 0 4 1170 904 187 60 11 chr3 76807847 76808031 -82791752 + RMER6C LTR ERVK 1 193 -527 4 146 1064 143 17 0 chr3 76808043 76808218 -82791565 + RMER6C LTR ERVK 513 690 0 4 1171 371 285 164 35 chr3 76808219 76808522 -82791261 - L1MC LINE L1 -877 5269 4925 4 1171 1051 110 0 0 chr3 76809259 76809405 -82790378 + B1_Mus2 SINE Alu 1 146 -1 4 1171 202 125 0 59 chr3 76809405 76809473 -82790310 + (CAAA)n Simple_repeat Simple_repeat 1 64 0 4 1171 268 172 31 0 chr3 76809550 76809614 -82790169 - L1MEc LINE L1 -6245 155 90 4 1171 24 0 0 0 chr3 76809636 76809660 -82790123 + AT_rich Low_complexity Low_complexity 1 24 0 4 1171 34 24 0 0 chr3 76810753 76810794 -82788989 + AT_rich Low_complexity Low_complexity 1 41 0 4 1171 6665 146 1 20 chr3 76811134 76811361 -82788422 + Lx LINE L1 5432 5658 -225 4 1171 2103 161 27 25 chr3 76811361 76811769 -82788014 - RLTR9E LTR ERVK 0 409 1 4 1171 6665 146 2 12 chr3 76811769 76812775 -82787008 + Lx LINE L1 5659 6654 0 4 1171 301 276 136 33 chr3 76813103 76813493 -82786290 + L1MCa LINE L1 1409 1838 -4670 4 1171 683 309 71 53 chr3 76813697 76813963 -82785820 - MTEb LTR MaLR 0 379 109 4 1171 341 320 74 37 chr3 76814061 76814304 -82785479 - MT2A LTR ERVL -138 395 144 4 1171 9156 181 19 57 chr3 76814325 76815693 -82784090 - Lx2B LINE L1 -512 6488 5293 4 1171 2140 78 10 0 chr3 76815693 76815986 -82783797 - L1_Mus3 LINE L1 0 6638 6343 4 1171 9156 174 19 94 chr3 76815986 76817417 -82782366 - Lx2B LINE L1 -594 5292 3854 4 1171 797 218 16 26 chr3 76817433 76817626 -82782157 + L1_Mur3 LINE L1 1707 1897 -3983 4 1171 4952 175 38 6 chr3 76817629 76818562 -82781221 - Lx3C LINE L1 -145 6831 5870 4 1171 1132 211 104 36 chr3 76818568 76818877 -82780906 + MTD LTR MaLR 44 373 -46 4 1171 225 0 0 0 chr3 76820461 76820486 -82779297 + (T)n Simple_repeat Simple_repeat 1 25 0 4 1171 2791 50 0 14 chr3 76821251 76821614 -82778169 - L1Md_F3 LINE L1 0 6584 6227 4 1171 4929 41 7 0 chr3 76821614 76822218 -82777565 + L1Md_F3 LINE L1 5639 6246 -338 4 1171 5285 111 21 8 chr3 76823262 76824058 -82775725 - Lx3A LINE L1 -3 6978 6172 4 1171 1948 80 53 16 chr3 76824061 76824365 -82775418 + L1_Mur1 LINE L1 4714 5028 -858 4 1171 533 95 12 0 chr3 76824361 76824445 -82775338 + Lx3_Mus LINE L1 6116 6200 -809 4 1171 1894 48 8 35 chr3 76824770 76825027 -82774756 - L1Md_F2 LINE L1 -3 6579 6330 4 1171 716 137 18 6 chr3 76825027 76825161 -82774622 + L1Md_F2 LINE L1 5668 5837 -357 4 1171 21 0 0 0 chr3 76825277 76825298 -82774485 + AT_rich Low_complexity Low_complexity 1 21 0 4 1171 23 33 0 0 chr3 76826158 76826188 -82773595 + AT_rich Low_complexity Low_complexity 1 30 0 4 1171 238 258 65 0 chr3 76826288 76826350 -82773433 + ID4_ SINE ID 1 66 -17 4 1171 2930 36 7 112 chr3 76826861 76827297 -82772486 + RLTR10 LTR ERVK 1 390 0 4 1171 26 0 0 0 chr3 76827354 76827380 -82772403 + AT_rich Low_complexity Low_complexity 1 26 0 4 1171 362 307 92 23 chr3 76827890 76828020 -82771763 + Lx7 LINE L1 7075 7213 -483 4 1171 28 0 0 0 chr3 76828500 76828528 -82771255 + AT_rich Low_complexity Low_complexity 1 28 0 4 1171 2136 203 9 33 chr3 76828668 76829096 -82770687 + MTC LTR MaLR 1 418 -3 4 1171 577 219 75 5 chr3 76829153 76829434 -82770349 - L1_Mur3 LINE L1 -4414 1466 1168 4 1171 3002 96 5 2 chr3 76829435 76829863 -82769920 - L1_Mus3 LINE L1 -7 6631 6203 4 1171 584 259 64 58 chr3 76829863 76830175 -82769608 - L1_Mur3 LINE L1 -1322 4558 4245 4 1171 7231 71 9 5 chr3 76831455 76832930 -82766853 - L1Md_F2 LINE L1 -1 6581 5099 4 1171 11051 85 4 5 chr3 76832932 76834498 -82765285 + L1Md_F2 LINE L1 3480 5043 -840 4 1171 21 57 0 0 chr3 76834636 76834671 -82765112 + AT_rich Low_complexity Low_complexity 1 35 0 4 1171 735 116 0 0 chr3 76834897 76835009 -82764774 + (TTTC)n Simple_repeat Simple_repeat 2 113 0 4 1171 236 53 26 0 chr3 76835142 76835180 -82764603 + (TG)n Simple_repeat Simple_repeat 1 39 0 4 1171 1371 235 90 11 chr3 76835506 76835984 -82763799 + Lx9 LINE L1 7122 7637 -7 4 1171 234 179 56 56 chr3 76836117 76836188 -82763595 + L1M5 LINE L1 2698 2768 -3378 4 1171 1775 146 8 30 chr3 76836570 76836930 -82762853 + ORR1A3 LTR MaLR 1 324 -5 4 1171 25 0 0 0 chr3 76837318 76837343 -82762440 + AT_rich Low_complexity Low_complexity 1 25 0 4 1171 2819 246 21 22 chr3 76837721 76838400 -82761383 - Lx5 LINE L1 0 7050 6373 4 1171 188 34 0 33 chr3 76838418 76838448 -82761335 + (CAAAAA)n Simple_repeat Simple_repeat 5 33 0 4 1171 1172 268 109 17 chr3 76838520 76838877 -82760906 - MTD LTR MaLR 0 419 30 4 1171 345 193 160 67 chr3 76839179 76839373 -82760410 - Lx9 LINE L1 -1 7643 7432 4 1171 574 290 24 19 chr3 76839376 76839587 -82760196 + Lx9 LINE L1 7222 7433 -211 4 1171 754 183 0 12 chr3 76840404 76840570 -82759213 + (CATATA)n Simple_repeat Simple_repeat 5 168 0 4 1171 504 0 0 0 chr3 76840781 76840837 -82758946 + (TA)n Simple_repeat Simple_repeat 2 57 0 4 1171 257 379 43 8 chr3 76841151 76841268 -82758515 - MLT1F2 LTR MaLR -2 558 438 4 1171 475 357 9 14 chr3 76841437 76841653 -82758130 + ID_B1 SINE B4 5 219 -5 4 1171 4704 78 6 9 chr3 76841915 76842562 -82757221 + L1Md_F2 LINE L1 5927 6571 -11 4 1171 294 278 0 0 chr3 76842588 76842660 -82757123 + B1_Mur1 SINE Alu 71 142 -7 4 1171 242 196 0 0 chr3 76843734 76843785 -82755998 + CT-rich Low_complexity Low_complexity 2 52 0 4 1171 331 345 28 35 chr3 76843800 76843944 -82755839 - RSINE1 SINE B4 -5 160 18 4 1171 247 191 29 0 chr3 76847369 76847437 -82752346 + (TA)n Simple_repeat Simple_repeat 1 70 0 4 1171 490 345 66 47 chr3 76848299 76848741 -82751042 + MER73 LTR ERVL 136 636 -8 4 1171 466 366 45 35 chr3 76848834 76849035 -82750748 + B4 SINE B4 4 206 -86 4 1171 23 68 0 0 chr3 76849264 76849308 -82750475 + AT_rich Low_complexity Low_complexity 1 44 0 4 1171 180 176 0 0 chr3 76850629 76850663 -82749120 + A-rich Low_complexity Low_complexity 2 35 0 4 1171 1059 232 61 4 chr3 76851462 76851709 -82748074 - MTC LTR MaLR -14 407 147 4 1171 21 0 0 0 chr3 76851797 76851818 -82747965 + AT_rich Low_complexity Low_complexity 1 21 0 4 1171 48 32 0 0 chr3 76851869 76851931 -82747852 + AT_rich Low_complexity Low_complexity 1 62 0 4 1171 210 200 0 0 chr3 76852065 76852100 -82747683 + PB1D7 SINE Alu 16 50 -70 4 1171 207 100 0 0 chr3 76852146 76852176 -82747607 + (TAAA)n Simple_repeat Simple_repeat 3 32 0 4 1171 255 390 21 21 chr3 76853958 76854102 -82745681 + RMER15 LTR ERVL 276 419 -156 4 1171 26 30 0 0 chr3 76854208 76854241 -82745542 + AT_rich Low_complexity Low_complexity 1 33 0 4 1171 27 81 0 0 chr3 76854329 76854391 -82745392 + AT_rich Low_complexity Low_complexity 1 62 0 4 1171 195 42 0 0 chr3 76854532 76854556 -82745227 + (GAAAA)n Simple_repeat Simple_repeat 4 27 0 4 1171 267 161 0 0 chr3 76854568 76854624 -82745159 + (TTTA)n Simple_repeat Simple_repeat 1 56 0 4 1171 205 195 0 0 chr3 76854626 76854667 -82745116 + (TTAG)n Simple_repeat Simple_repeat 3 43 0 4 1171 361 362 25 57 chr3 76854667 76854825 -82744958 - RSINE1 SINE B4 -2 163 11 4 1171 28 61 0 0 chr3 76855508 76855557 -82744226 + AT_rich Low_complexity Low_complexity 1 49 0 4 1171 3342 53 7 0 chr3 76856111 76856525 -82743258 - L1Md_F3 LINE L1 -2 6582 6166 4 1171 4271 106 16 21 chr3 76856525 76857381 -82742402 + L1Md_F3 LINE L1 5641 6474 -92 4 1171 195 42 0 0 chr3 76857381 76857405 -82742378 + (TGGG)n Simple_repeat Simple_repeat 2 25 0 4 1171 3247 215 37 52 chr3 76857405 76857486 -82742297 + L1Md_F3 LINE L1 6475 6563 -3 4 1171 389 272 44 93 chr3 76857490 76857817 -82741966 + L1_Mur3 LINE L1 914 1220 -5762 4 1171 4790 54 13 8 chr3 76858040 76858655 -82741128 - L1Md_F2 LINE L1 -15 6567 5950 4 1171 305 291 0 0 chr3 76858835 76858914 -82740869 - B1_Mur1 SINE Alu 0 149 71 4 1171 7559 67 3 8 chr3 76858941 76859986 -82739797 - L1Md_F2 LINE L1 -13 6569 5530 4 1171 239 371 0 0 chr3 76860853 76860923 -82738860 + ID4_ SINE ID 1 70 -13 4 1171 594 298 131 10 chr3 76862931 76863243 -82736540 + L1_Mur3 LINE L1 4922 5271 -609 4 1171 370 266 91 43 chr3 76863254 76863299 -82736484 + L1_Mur3 LINE L1 5394 5448 -432 4 1171 1323 45 0 0 chr3 76863299 76863499 -82736284 + (TC)n Simple_repeat Simple_repeat 1 200 0 4 1171 432 0 0 0 chr3 76863499 76863546 -82736237 + (CA)n Simple_repeat Simple_repeat 1 48 0 4 1171 370 266 91 43 chr3 76863546 76863706 -82736077 + L1_Mur3 LINE L1 5449 5608 -272 4 1171 1177 203 79 0 chr3 76863708 76863949 -82735834 + ORR1C2 LTR MaLR 3 262 -122 4 1171 388 311 16 28 chr3 76863969 76864151 -82735632 + Lx7 LINE L1 6975 7154 -542 4 1171 501 263 224 41 chr3 76864146 76864463 -82735320 + Lx7 LINE L1 6882 7256 -440 4 1171 268 231 7 65 chr3 76864500 76864653 -82735130 + T-rich Low_complexity Low_complexity 1 144 0 4 1171 215 244 0 0 chr3 76866157 76866202 -82733581 + CT-rich Low_complexity Low_complexity 3 47 0 4 1171 1560 264 171 22 chr3 76866215 76866764 -82733019 - Lx5 LINE L1 -4 7046 6416 5 1171 1115 181 213 3 chr3 76866758 76867058 -82732725 + Lx4A LINE L1 6084 6446 -612 5 1171 216 0 0 0 chr3 76867060 76867084 -82732699 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 5 1171 228 35 0 0 chr3 76868079 76868108 -82731675 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 5 1171 392 360 40 0 chr3 76868362 76868512 -82731271 - ID_B1 SINE B4 -67 157 2 5 1171 1655 97 48 41 chr3 76868762 76869031 -82730752 - L1_Mus4 LINE L1 -9 6627 6357 5 1171 488 146 0 11 chr3 76871722 76871812 -82727971 + CT-rich Low_complexity Low_complexity 1 89 0 5 1171 1524 169 36 84 chr3 76873645 76873980 -82725803 - ORR1A4 LTR MaLR -8 321 3 5 1171 674 110 37 0 chr3 76873982 76874091 -82725692 - ORR1A4-int LTR MaLR 0 1963 1851 5 1171 216 0 0 0 chr3 76874092 76874116 -82725667 + (TTTTTG)n Simple_repeat Simple_repeat 2 25 0 5 1171 534 341 8 8 chr3 76874137 76874391 -82725392 + L1VL4 LINE L1 138 391 -5911 5 1171 7984 178 28 4 chr3 76874395 76876007 -82723776 + L1_Mur1 LINE L1 2268 3917 -1969 5 1171 6926 69 0 1 chr3 76876000 76876890 -82722893 + L1Md_F2 LINE L1 4698 5586 -297 5 1171 7752 61 7 3 chr3 76876890 76877882 -82721901 + L1Md_F2 LINE L1 5587 6582 0 5 1171 525 174 0 27 chr3 76877882 76877994 -82721789 + L1_Mm LINE L1 3923 4031 -1852 5 1171 326 161 0 0 chr3 76878183 76878245 -82721538 + L1_Mm LINE L1 4558 4619 -1264 5 1171 4507 174 43 6 chr3 76878245 76879167 -82720616 - ORR1A3-int LTR MaLR -193 1770 930 5 1171 417 321 9 0 chr3 76879721 76879833 -82719950 - ID_B1 SINE B4 -29 195 83 5 1171 1647 196 136 5 chr3 76880004 76880373 -82719410 + MTC LTR MaLR 5 421 0 5 1171 22 35 0 0 chr3 76880656 76880685 -82719098 + AT_rich Low_complexity Low_complexity 1 29 0 5 1171 194 105 0 26 chr3 76880784 76880823 -82718960 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 5 1171 1212 231 55 73 chr3 76882551 76883019 -82716764 - Lx7 LINE L1 -1616 6080 5670 5 1171 725 196 53 43 chr3 76883019 76883206 -82716577 - B2_Mm2 SINE B2 -6 189 1 5 1171 1212 235 10 158 chr3 76883206 76883421 -82716362 - Lx7 LINE L1 -211 5669 5454 5 1171 919 283 85 63 chr3 76883412 76883849 -82715934 + RMER1A Other Other 467 913 -117 5 1171 198 0 0 0 chr3 76883849 76883871 -82715912 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 5 1171 919 288 16 36 chr3 76883871 76883990 -82715793 + RMER1A Other Other 914 1030 0 5 1171 1945 229 166 12 chr3 76883986 76884737 -82715046 - Lx7 LINE L1 -821 5059 4193 5 1171 447 19 0 0 chr3 76884809 76884861 -82714922 + (TC)n Simple_repeat Simple_repeat 1 52 0 5 1171 236 161 68 51 chr3 76884864 76884923 -82714860 - Lx7 LINE L1 -2873 3007 2948 5 1171 3282 191 8 20 chr3 76884935 76885591 -82714192 - Lx LINE L1 0 6654 6007 5 1171 5465 151 27 9 chr3 76885676 76886859 -82712924 - Lx2 LINE L1 -460 6537 5347 5 1171 1183 203 78 18 chr3 76886858 76887189 -82712594 - Lx7 LINE L1 -2925 2955 2605 5 1171 2190 212 148 10 chr3 76887189 76887795 -82711988 + RMER6C LTR ERVK 1 690 0 5 1171 1000 189 0 0 chr3 76887796 76887971 -82711812 + RMER6D LTR ERVK 535 709 -11 5 1171 462 206 113 7 chr3 76887977 76888119 -82711664 - Lx7 LINE L1 -3264 2616 2460 5 1171 749 239 75 26 chr3 76888137 76888365 -82711418 + RMER4B LTR ERVK 17 255 -330 5 1171 371 260 50 41 chr3 76888497 76888666 -82711117 + RMER4B LTR ERVK 343 549 -36 5 1171 2868 162 48 2 chr3 76888855 76889374 -82710409 + RLTR33 LTR ERVK 1 543 -135 5 1171 807 135 0 36 chr3 76889811 76889949 -82709834 + RLTR33 LTR ERVK 540 672 -6 5 1171 495 107 0 0 chr3 76890168 76890243 -82709540 + (TCC)n Simple_repeat Simple_repeat 1 75 0 5 1171 4081 259 57 34 chr3 76890243 76891849 -82707934 + MurERV4-int LTR ERVK 179 1733 -3527 5 1171 6830 174 54 17 chr3 76891847 76893243 -82706540 + MurERV4-int LTR ERVK 2390 3836 -1424 5 1171 1301 229 7 18 chr3 76893245 76893521 -82706262 + RMER19C LTR ERVK 337 609 -2 5 1171 2965 205 66 22 chr3 76893523 76894250 -82705533 + MurERV4-int LTR ERVK 4393 5151 -109 5 1171 474 246 23 0 chr3 76894272 76894402 -82705381 + MYSERV-int LTR ERVK 4523 4655 -1895 5 1171 1210 98 5 27 chr3 76894409 76894433 -82705350 - B2_Mm2 SINE B2 -10 185 165 5 1171 423 0 0 0 chr3 76894433 76894480 -82705303 + (TATG)n Simple_repeat Simple_repeat 2 48 0 5 1171 1210 98 5 27 chr3 76894480 76894643 -82705140 - B2_Mm2 SINE B2 -31 164 2 5 1171 748 306 4 38 chr3 76894703 76894941 -82704842 + MYSERV-int LTR ERVK 4905 5134 -1416 5 1171 352 249 34 127 chr3 76894942 76895136 -82704647 + RMER4A LTR ERVK 256 553 -32 5 1171 2786 229 35 137 chr3 76895197 76895773 -82704010 + MYSERV6-int LTR ERVK 7877 8362 -597 5 1171 186 43 0 0 chr3 76895773 76895796 -82703987 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 5 1171 2786 229 35 137 chr3 76895796 76896363 -82703420 + MYSERV6-int LTR ERVK 8363 8903 -56 5 1171 637 226 171 17 chr3 76896439 76896678 -82703105 + RMER4B LTR ERVK 1 276 -309 5 1171 414 236 54 19 chr3 76896872 76897043 -82702740 + RMER4B LTR ERVK 368 579 -6 5 1171 246 32 0 0 chr3 76897108 76897139 -82702644 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 5 1171 279 0 0 0 chr3 76897142 76897173 -82702610 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 5 1171 1055 50 14 7 chr3 76897185 76897325 -82702458 - B1_Mm SINE Alu -2 145 5 5 1171 991 247 43 20 chr3 76897343 76897690 -82702093 - L1_Mur3 LINE L1 -3476 2404 2050 5 1171 486 33 0 0 chr3 76897694 76897754 -82702029 + (CA)n Simple_repeat Simple_repeat 2 61 0 5 1171 7660 39 0 1 chr3 76899451 76900374 -82699409 - L1Md_F3 LINE L1 -3 6581 5660 5 1171 14128 192 135 84 chr3 76900986 76901709 -82698074 + L1_Mur2 LINE L1 889 1684 -4193 5 1171 297 0 0 0 chr3 76901709 76901742 -82698041 + (GAAAA)n Simple_repeat Simple_repeat 3 35 0 5 1171 14128 181 50 118 chr3 76901742 76901927 -82697856 + L1_Mur2 LINE L1 1685 1901 -3976 5 1171 207 0 0 0 chr3 76901927 76901950 -82697833 + (TAAAA)n Simple_repeat Simple_repeat 3 25 0 5 1171 14128 181 50 118 chr3 76901950 76902100 -82697683 + L1_Mur2 LINE L1 1902 2050 -3827 5 1171 276 30 0 0 chr3 76902100 76902133 -82697650 + (CA)n Simple_repeat Simple_repeat 2 34 0 5 1171 14128 181 50 118 chr3 76902133 76902300 -82697483 + L1_Mur2 LINE L1 2051 2204 -3673 5 1171 4191 40 0 0 chr3 76902300 76902799 -82696984 + L1Md_T LINE L1 6084 6582 0 5 1171 14128 181 50 118 chr3 76902799 76904895 -82694888 + L1_Mur2 LINE L1 2205 4340 -1537 5 1171 2612 101 6 0 chr3 76904895 76905261 -82694522 + MTB LTR MaLR 32 399 -1 5 1171 14128 181 50 118 chr3 76905261 76906091 -82693692 + L1_Mur2 LINE L1 4341 5188 -689 5 1171 1990 229 60 27 chr3 76906086 76906634 -82693149 + Lx5 LINE L1 5789 6354 -696 5 1171 1886 226 27 81 chr3 76906630 76907146 -82692637 + Lx5 LINE L1 6527 7014 -36 5 1171 485 327 19 24 chr3 76907413 76907626 -82692157 - L1MB1 LINE L1 -53 6136 5925 5 1171 251 239 6 15 chr3 76907627 76907710 -82692073 - RMER1B Other Other -6 1060 940 5 1171 1518 176 192 34 chr3 76907967 76908407 -82691376 - BGLII_B LTR ERVK -7 434 1 5 1171 2387 253 57 29 chr3 76908407 76909034 -82690749 - RMER1B Other Other -80 986 342 5 1171 230 307 29 29 chr3 76909219 76909323 -82690460 - L1MB1 LINE L1 -253 5936 5833 5 1171 250 312 0 21 chr3 76909343 76909438 -82690345 + Lx8 LINE L1 7190 7282 -191 5 1171 387 0 0 0 chr3 76909550 76909593 -82690190 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 5 1171 27 0 0 0 chr3 76909799 76909826 -82689957 + AT_rich Low_complexity Low_complexity 1 27 0 5 1171 225 359 32 11 chr3 76910087 76910180 -82689603 - LTR69 LTR ERVL -121 467 373 5 1171 261 169 0 0 chr3 76910265 76910324 -82689459 + T-rich Low_complexity Low_complexity 1 59 0 5 1171 1155 62 0 14 chr3 76910325 76910473 -82689310 - B1_Mus1 SINE Alu -1 147 2 5 1171 707 52 0 10 chr3 76910483 76910580 -82689203 + (TTTC)n Simple_repeat Simple_repeat 2 97 0 5 1171 387 83 0 0 chr3 76910590 76910650 -82689133 + (TA)n Simple_repeat Simple_repeat 1 60 0 5 1171 1595 42 5 0 chr3 76910778 76910970 -82688813 - B2_Mm1t SINE B2 0 193 1 5 1171 22 0 0 0 chr3 76911674 76911696 -82688087 + AT_rich Low_complexity Low_complexity 1 22 0 5 1171 21 89 0 0 chr3 76914553 76914609 -82685174 + AT_rich Low_complexity Low_complexity 1 56 0 5 1171 342 98 0 0 chr3 76914965 76915016 -82684767 + (TG)n Simple_repeat Simple_repeat 2 52 0 5 1171 23 0 0 0 chr3 76915520 76915543 -82684240 + AT_rich Low_complexity Low_complexity 1 23 0 5 1171 299 396 0 0 chr3 76915665 76915756 -82684027 + PB1D10 SINE Alu 18 108 -9 5 1171 234 116 0 0 chr3 76916673 76916716 -82683067 + (A)n Simple_repeat Simple_repeat 1 43 0 5 1171 310 307 54 90 chr3 76916891 76917113 -82682670 + MTD LTR MaLR 36 249 -170 5 1171 2895 253 41 37 chr3 76917114 76917656 -82682127 + Lx6 LINE L1 5641 6179 -1281 5 1171 756 33 0 0 chr3 76917656 76917747 -82682036 + (TG)n Simple_repeat Simple_repeat 2 92 0 5 1171 2895 253 41 37 chr3 76917747 76918016 -82681767 + Lx6 LINE L1 6180 6454 -1006 5 1171 2868 241 38 71 chr3 76918057 76918843 -82680940 + Lx6 LINE L1 6699 7458 -2 5 1171 451 282 105 52 chr3 76918909 76919100 -82680683 + MTE2a LTR MaLR 179 379 0 5 1171 273 350 69 40 chr3 76919202 76919375 -82680408 - B4A SINE B4 -86 206 29 5 1171 433 332 44 119 chr3 76920196 76920606 -82679177 - MTE2a LTR MaLR 0 379 1 5 1171 500 356 65 33 chr3 76921499 76921775 -82678008 - B4A SINE B4 -2 290 6 5 1171 1069 288 219 34 chr3 76921879 76922146 -82677637 + RCHARR1 DNA MER1_type 99 377 -597 5 1171 330 26 0 0 chr3 76922146 76922185 -82677598 + (CA)n Simple_repeat Simple_repeat 1 39 0 5 1171 1069 288 219 34 chr3 76922185 76922644 -82677139 + RCHARR1 DNA MER1_type 378 959 -15 5 1171 270 379 22 28 chr3 76922672 76922854 -82676929 + B3A SINE B2 2 182 -16 5 1171 259 235 55 17 chr3 76923350 76923470 -82676313 - L1M1 LINE L1 -662 5638 5514 5 1171 477 0 0 0 chr3 76923492 76923545 -82676238 + (CA)n Simple_repeat Simple_repeat 2 54 0 5 1171 1007 98 12 18 chr3 76924125 76924292 -82675491 - L1_Mus3 LINE L1 0 6638 6473 5 1171 389 127 60 60 chr3 76924319 76924372 -82675411 - B1_Mur4 SINE Alu 0 150 98 5 1171 1892 256 55 45 chr3 76924372 76924989 -82674794 - RLTR1 LTR ERV1 0 624 2 5 1171 748 81 0 0 chr3 76924989 76925088 -82674695 - B1_Mus1 SINE Alu -48 100 2 5 1171 428 206 0 108 chr3 76925088 76925105 -82674678 - MT2B LTR ERVL -343 254 152 5 1171 951 9 0 0 chr3 76925519 76925627 -82674156 + (TTC)n Simple_repeat Simple_repeat 2 109 0 5 1171 7756 126 6 34 chr3 76925627 76928107 -82671676 - L1_Mus1 LINE L1 -9 6558 4243 5 1171 2479 71 222 3 chr3 76928172 76928592 -82671191 + L1_Mus2 LINE L1 6094 6566 0 5 1171 532 304 59 52 chr3 76929094 76929517 -82670266 + IAPEz-int LTR ERVK 2966 3444 -4137 5 1171 3103 56 5 0 chr3 76930270 76930666 -82669117 + L1Md_F3 LINE L1 6187 6584 0 5 1171 261 404 0 96 chr3 76931030 76931145 -82668638 - PB1D10 SINE Alu -8 109 6 5 1171 490 282 116 0 chr3 76931254 76931470 -82668313 - Lx9 LINE L1 -269 7375 7135 5 1171 300 111 0 0 chr3 76931645 76931690 -82668093 + (TA)n Simple_repeat Simple_repeat 2 46 0 5 1171 461 281 111 0 chr3 76931690 76931825 -82667958 - B3 SINE B2 -29 187 38 5 1171 678 13 0 0 chr3 76932183 76932262 -82667521 + (TTTC)n Simple_repeat Simple_repeat 2 80 0 5 1171 18680 72 1 7 chr3 76932382 76934893 -82664890 + L1Md_F2 LINE L1 3091 5585 -298 5 1171 7893 52 2 4 chr3 76934894 76935892 -82663891 + L1Md_F2 LINE L1 5587 6582 0 5 1171 907 123 19 0 chr3 76936436 76936598 -82663185 + Lx3_Mus LINE L1 6845 7009 0 5 1171 210 177 0 25 chr3 76936614 76936654 -82663129 + MIR SINE MIR 113 152 -56 5 1171 208 158 33 50 chr3 76938208 76938268 -82661515 + A-rich Low_complexity Low_complexity 6 64 0 6 1172 1472 218 31 11 chr3 76941198 76941724 -82658059 + L1_Mur2 LINE L1 896 1434 -4443 6 1172 4634 156 41 20 chr3 76941726 76942581 -82657202 + Lx3B LINE L1 6099 6971 -2 6 1172 6961 191 30 88 chr3 76942603 76944526 -82655257 + L1_Mur2 LINE L1 1712 3542 -2344 6 1172 1482 251 31 182 chr3 76944526 76945794 -82653989 + L1_Mur2 LINE L1 3872 4947 -930 6 1172 341 176 7 67 chr3 76945794 76945902 -82653881 + ORR1C2 LTR MaLR 273 384 0 6 1172 570 363 62 8 chr3 76946523 76946781 -82653002 + B4A SINE B4 10 281 -11 6 1172 189 195 0 0 chr3 76948190 76948231 -82651552 + CT-rich Low_complexity Low_complexity 2 42 0 6 1172 562 49 24 0 chr3 76948404 76948486 -82651297 + (GA)n Simple_repeat Simple_repeat 2 85 0 6 1172 228 234 31 0 chr3 76948775 76948839 -82650944 + Lx7 LINE L1 6859 6924 -772 6 1172 315 49 0 0 chr3 76948839 76948880 -82650903 + (T)n Simple_repeat Simple_repeat 1 41 0 6 1172 6762 1 0 0 chr3 76948882 76949628 -82650155 - L1Md_A LINE L1 0 6582 5837 6 1172 9674 54 27 2 chr3 76949628 76950984 -82648799 + Lx LINE L1 4754 7230 -466 6 1172 327 96 0 0 chr3 76951034 76951086 -82648697 + (TG)n Simple_repeat Simple_repeat 1 52 0 6 1172 240 245 123 41 chr3 76951118 76951288 -82648495 + Lx LINE L1 7511 7694 -2 6 1172 1341 214 128 3 chr3 76952785 76953104 -82646679 - ORR1B2 LTR MaLR -8 359 1 6 1172 205 176 0 0 chr3 76954487 76954521 -82645262 + (TATTG)n Simple_repeat Simple_repeat 2 35 0 6 1172 23 54 0 0 chr3 76956081 76956118 -82643665 + AT_rich Low_complexity Low_complexity 1 37 0 6 1172 275 324 18 18 chr3 76956364 76956474 -82643309 - PB1D10 SINE Alu -7 110 1 6 1172 31802 84 7 8 chr3 76957516 76962855 -82636928 + L1Md_F2 LINE L1 301 5585 -298 6 1172 7973 50 1 12 chr3 76962856 76963863 -82635920 + L1Md_F2 LINE L1 5587 6582 0 6 1172 797 300 101 13 chr3 76964464 76964849 -82634934 + MTD LTR MaLR 1 419 0 6 1172 21 71 0 0 chr3 76965491 76965533 -82634250 + AT_rich Low_complexity Low_complexity 1 42 0 6 1172 33 113 0 0 chr3 76966152 76966311 -82633472 + AT_rich Low_complexity Low_complexity 1 159 0 6 1172 336 102 0 0 chr3 76966490 76966539 -82633244 + (T)n Simple_repeat Simple_repeat 1 49 0 6 1172 691 92 0 68 chr3 76966539 76966656 -82633127 - B1_Mus1 SINE Alu 0 148 40 6 1172 369 0 0 0 chr3 76969135 76969176 -82630607 + (CA)n Simple_repeat Simple_repeat 2 42 0 6 1172 345 331 56 42 chr3 76969492 76969634 -82630149 + B4A SINE B4 30 173 -119 6 1172 856 195 97 5 chr3 76969637 76969843 -82629940 + URR1B DNA MER1_type 1 225 0 6 1172 558 43 0 0 chr3 76969891 76969960 -82629823 + (GAAAA)n Simple_repeat Simple_repeat 2 70 0 6 1172 1570 198 98 3 chr3 76970031 76970356 -82629427 + ORR1B2 LTR MaLR 1 356 -11 6 1172 31 26 0 0 chr3 76971889 76971927 -82627856 + AT_rich Low_complexity Low_complexity 1 38 0 6 1172 21 0 0 0 chr3 76973128 76973149 -82626634 + AT_rich Low_complexity Low_complexity 1 21 0 6 1172 195 42 0 0 chr3 76974600 76974624 -82625159 + (TTTTTG)n Simple_repeat Simple_repeat 2 25 0 6 1172 3690 76 2 0 chr3 76975450 76975934 -82623849 + L1_Mus1 LINE L1 6083 6567 0 6 1172 21 0 0 0 chr3 76976022 76976043 -82623740 + AT_rich Low_complexity Low_complexity 1 21 0 6 1172 31030 96 11 10 chr3 76976129 76981295 -82618488 + L1Md_A LINE L1 416 5586 -297 6 1172 8416 34 0 0 chr3 76981295 76982291 -82617492 + L1Md_T LINE L1 5587 6582 0 6 1172 2245 57 3 0 chr3 76982299 76982582 -82617201 + L1Md_F2 LINE L1 5302 5585 -298 6 1172 7086 78 18 12 chr3 76982584 76983573 -82616210 + L1Md_F2 LINE L1 5588 6582 0 6 1172 375 23 0 0 chr3 76983841 76983885 -82615898 + (A)n Simple_repeat Simple_repeat 1 44 0 6 1172 6989 104 11 19 chr3 76983945 76984283 -82615500 - L1_Mus3 LINE L1 -7 6631 6307 6 1172 3367 25 8 0 chr3 76984283 76984676 -82615107 + MTA_Mm LTR MaLR 1 396 0 6 1172 14955 147 40 11 chr3 76984676 76987953 -82611830 - L1_Mus3 LINE L1 -332 6306 2912 6 1172 38182 43 0 3 chr3 76987953 76994367 -82605416 - L1Md_T LINE L1 0 6585 123 6 1172 3224 128 15 38 chr3 76994363 76994949 -82604834 - L1VL4 LINE L1 -992 2567 1995 6 1172 3267 141 8 32 chr3 76994945 76995765 -82604018 - L1VL4 LINE L1 -2400 1159 362 6 1172 427 74 14 14 chr3 76995967 76996036 -82603747 + (TA)n Simple_repeat Simple_repeat 2 70 0 6 1172 298 241 226 7 chr3 76996041 76996187 -82603596 - Lx9 LINE L1 -179 7465 7288 6 1172 725 283 25 42 chr3 76996223 76996459 -82603324 + Lx9 LINE L1 6363 6594 -1050 6 1172 23 54 0 0 chr3 76997021 76997058 -82602725 + AT_rich Low_complexity Low_complexity 1 37 0 6 1172 331 312 0 0 chr3 76997628 76997766 -82602017 + Lx9 LINE L1 7499 7636 -8 6 1172 2385 180 62 71 chr3 76997800 76998380 -82601403 + RMER15 LTR ERVL 1 575 0 6 1172 216 0 0 0 chr3 76998783 76998807 -82600976 + (CA)n Simple_repeat Simple_repeat 2 25 0 6 1172 1688 312 151 35 chr3 76998822 76999794 -82599989 + Lx8 LINE L1 6226 7330 -143 6 1172 309 109 0 0 chr3 76999794 76999840 -82599943 + (TAGG)n Simple_repeat Simple_repeat 1 46 0 6 1172 1688 312 151 35 chr3 76999840 76999977 -82599806 + Lx8 LINE L1 7331 7463 -10 6 1172 534 286 14 28 chr3 77000861 77001005 -82598778 + B3A SINE B2 2 143 -55 1 1172 502 69 0 0 chr3 77001121 77001193 -82598590 - L1_Mus2 LINE L1 -1 6565 6494 2 1172 377 234 16 112 chr3 77003310 77003432 -82596351 + PB1D7 SINE Alu 11 120 0 3 1172 2280 87 6 6 chr3 77003483 77003794 -82595989 - RLTR10E LTR ERVK 0 311 1 4 1172 1569 223 14 6 chr3 77003889 77004241 -82595542 - IAPEY3-int LTR ERVK -280 7400 7046 5 1172 378 139 139 0 chr3 77004245 77004331 -82595452 - RLTR10-int LTR ERVK -600 1387 1290 4 1172 1478 110 101 0 chr3 77004332 77004550 -82595233 - IAP-d-int LTR ERVK -1299 5243 5004 6 1172 516 295 38 30 chr3 77004562 77004841 -82594942 - IAP-d-int LTR ERVK -5481 1061 822 6 1172 3292 68 14 28 chr3 77004981 77005441 -82594342 - RLTR10-int LTR ERVK -995 992 93 7 1172 703 121 22 50 chr3 77005441 77005469 -82594314 + polypyrimidine Low_complexity Low_complexity 149 179 0 8 1172 1092 119 0 0 chr3 77005469 77005637 -82594146 + (TC)n Simple_repeat Simple_repeat 1 168 0 9 1172 703 121 22 50 chr3 77005637 77005790 -82593993 + CT-rich Low_complexity Low_complexity 4 148 0 1 1172 359 48 0 0 chr3 77005841 77005883 -82593900 - MMERVK10C-int LTR ERVK -7314 267 226 1 1172 319 242 0 16 chr3 77005921 77005984 -82593799 - RLTR27 LTR ERVK 0 309 248 1 1172 612 88 33 0 chr3 77005986 77006077 -82593706 - MMERVK10C-int LTR ERVK -7487 94 1 1 1172 2062 86 48 0 chr3 77006077 77006368 -82593415 - RLTR10E LTR ERVK 0 311 7 1 1172 3105 118 32 20 chr3 77006368 77006870 -82592913 - Lx LINE L1 0 6654 6147 1 1172 314 257 116 68 chr3 77006870 77007016 -82592767 - RLTR17 LTR ERVK -328 364 212 1 1172 3907 203 15 33 chr3 77007095 77008026 -82591757 + RMER3D-int LTR ERVK 1928 2841 -1 1 1172 1313 252 58 40 chr3 77008035 77008415 -82591368 + RLTR17 LTR ERVK 106 492 -200 1 1172 198 0 0 0 chr3 77008903 77008925 -82590858 + (TTTTTG)n Simple_repeat Simple_repeat 2 23 0 1 1172 22 35 0 0 chr3 77009035 77009064 -82590719 + AT_rich Low_complexity Low_complexity 1 29 0 1 1172 271 361 6 6 chr3 77010169 77010325 -82589458 + RNERVK23-int LTR ERVK 297 452 -7765 1 1172 27 0 0 0 chr3 77010543 77010570 -82589213 + AT_rich Low_complexity Low_complexity 1 27 0 2 1172 2163 186 118 21 chr3 77010844 77011359 -82588424 + RMER16-int LTR ERVK 255 819 -4587 2 1172 1103 186 15 5 chr3 77011364 77011564 -82588219 + RMER16-int LTR ERVK 1089 1290 -4116 2 1172 1556 226 44 41 chr3 77011573 77011984 -82587799 + RMER16-int LTR ERVK 2339 2750 -4656 2 1172 2765 167 24 30 chr3 77011977 77012570 -82587213 + RMER16-int LTR ERVK 2313 2839 -2567 2 1172 2072 246 60 19 chr3 77012592 77013286 -82586497 + RMER16-int LTR ERVK 4083 4534 -2872 2 1172 1400 264 7 10 chr3 77013347 77013755 -82586028 + RMER16-int LTR ERVK 4846 5516 -1890 2 1172 807 232 7 7 chr3 77014099 77014251 -82585532 - ETnERV2-int LTR ERVK -185 7221 7070 2 1172 639 300 41 45 chr3 77014263 77014748 -82585035 + RMER16-int LTR ERVK 3351 3833 -1573 2 1172 713 362 37 32 chr3 77016531 77017093 -82582690 - Lx8 LINE L1 -839 6634 6070 2 1172 34 55 0 0 chr3 77017523 77017578 -82582205 + AT_rich Low_complexity Low_complexity 1 55 0 2 1172 753 316 35 35 chr3 77019333 77019589 -82580194 - RMER15 LTR ERVL -134 441 186 2 1172 240 263 0 0 chr3 77019593 77019669 -82580114 + T-rich Low_complexity Low_complexity 1 76 0 2 1172 514 242 13 51 chr3 77019727 77019884 -82579899 - RMER15 LTR ERVL -397 178 28 2 1172 927 143 25 71 chr3 77020031 77020227 -82579556 + B2_Mm2 SINE B2 1 187 -8 2 1172 229 358 48 24 chr3 77020292 77020544 -82579239 + L1MD2 LINE L1 6097 6354 -5 2 1172 231 443 17 38 chr3 77020763 77021000 -82578783 + B4A SINE B4 51 282 -10 3 1172 207 318 0 33 chr3 77021137 77021228 -82578555 + GA-rich Low_complexity Low_complexity 1 88 0 3 1172 548 273 53 90 chr3 77021377 77021566 -82578217 - B3A SINE B2 0 198 17 3 1172 279 0 0 0 chr3 77022007 77022038 -82577745 + (CA)n Simple_repeat Simple_repeat 2 32 0 3 1172 230 260 0 0 chr3 77022202 77022252 -82577531 + (TATG)n Simple_repeat Simple_repeat 2 51 0 3 1172 245 47 0 0 chr3 77022614 77022657 -82577126 + L1_Mus4 LINE L1 6592 6634 -2 3 1172 265 43 87 0 chr3 77022708 77022754 -82577029 + Lx2 LINE L1 6947 6996 -1 3 1172 444 37 0 0 chr3 77022979 77023033 -82576750 + (TTTTG)n Simple_repeat Simple_repeat 4 57 0 3 1172 493 314 21 0 chr3 77023034 77023174 -82576609 - B1_Mur3 SINE Alu -4 145 3 3 1172 290 316 25 0 chr3 77023219 77023298 -82576485 + 5S rRNA rRNA 10 90 -31 3 1172 25634 138 19 16 chr3 77023541 77025281 -82574502 - L1_Mus3 LINE L1 -7 6631 4867 4 1172 594 0 0 0 chr3 77025281 77025347 -82574436 + (TTTTG)n Simple_repeat Simple_repeat 2 67 0 4 1172 25634 158 18 12 chr3 77025347 77029790 -82569993 - L1_Mus3 LINE L1 -1017 4866 418 4 1172 1642 10 0 0 chr3 77030929 77031122 -82568661 - MTA_Mm LTR MaLR 0 396 204 4 1172 807 11 0 0 chr3 77031117 77031210 -82568573 - MT2_Mm LTR ERVL -400 93 1 4 1172 387 0 0 0 chr3 77031434 77031477 -82568306 + (A)n Simple_repeat Simple_repeat 1 43 0 4 1172 2112 225 58 91 chr3 77031700 77032341 -82567442 - RMER20B LTR ERVK -2 625 6 4 1172 744 12 0 0 chr3 77032851 77032936 -82566847 + (TC)n Simple_repeat Simple_repeat 2 86 0 4 1172 189 0 0 0 chr3 77032938 77032959 -82566824 + (TG)n Simple_repeat Simple_repeat 1 21 0 4 1172 1160 296 93 39 chr3 77033601 77034160 -82565623 - Lx8 LINE L1 -141 7332 6744 4 1172 288 0 0 0 chr3 77034225 77034257 -82565526 + (TG)n Simple_repeat Simple_repeat 2 33 0 4 1172 1716 215 72 27 chr3 77034328 77034833 -82564950 + RLTR19B LTR ERVK 1 715 0 5 1172 482 290 28 52 chr3 77035025 77035236 -82564547 - B3 SINE B2 -10 206 1 5 1172 805 331 43 22 chr3 77035654 77036022 -82563761 - Lx8 LINE L1 -458 7015 6640 5 1172 225 330 10 20 chr3 77036062 77036161 -82563622 - Lx7 LINE L1 -21 7675 7578 5 1172 255 235 25 0 chr3 77036189 77036270 -82563513 + (CAAA)n Simple_repeat Simple_repeat 2 84 0 5 1172 1519 332 46 33 chr3 77036314 77037073 -82562710 - Lx7 LINE L1 -384 7312 6544 5 1172 35635 45 0 3 chr3 77037566 77043001 -82556782 + L1Md_T LINE L1 76 5589 -297 5 1172 8402 32 1 0 chr3 77043001 77043996 -82555787 + L1Md_T LINE L1 5590 6585 0 5 1172 11779 206 58 65 chr3 77044567 77045397 -82554386 + Lx6 LINE L1 2422 3346 -2534 5 1172 258 0 23 45 chr3 77045397 77045441 -82554342 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 5 1172 11779 223 55 57 chr3 77045441 77048900 -82550883 + Lx6 LINE L1 3347 6700 -760 5 1172 347 257 14 0 chr3 77048916 77048986 -82550797 + Lx6 LINE L1 6799 6869 -591 5 1172 367 0 19 0 chr3 77049018 77049071 -82550712 - L1Md_T LINE L1 0 6582 6529 5 1172 888 271 31 52 chr3 77049071 77049391 -82550392 + Lx6 LINE L1 7145 7457 -3 5 1172 225 315 0 61 chr3 77049511 77049609 -82550174 + B2_Mm2 SINE B2 1 92 -103 5 1172 255 189 0 0 chr3 77049675 77049728 -82550055 + (TATG)n Simple_repeat Simple_repeat 2 54 0 6 1172 713 232 28 33 chr3 77049728 77049942 -82549841 + RMER1B Other Other 756 968 -98 6 1172 309 162 0 0 chr3 77050012 77050080 -82549703 + (ATG)n Simple_repeat Simple_repeat 1 68 0 6 1172 341 273 48 48 chr3 77050308 77050454 -82549329 + RMER15 LTR ERVL 380 525 -50 6 1172 1153 241 48 35 chr3 77050465 77050775 -82549008 + Lx9 LINE L1 7135 7448 -196 6 1172 1602 195 102 6 chr3 77050775 77051090 -82548693 + ORR1B2 LTR MaLR 1 342 -25 6 1172 595 58 57 9 chr3 77051090 77051195 -82548588 + L1Md_F3 LINE L1 6474 6583 -1 6 1172 1602 195 102 6 chr3 77051195 77051214 -82548569 + ORR1B2 LTR MaLR 343 365 -2 6 1172 366 42 0 0 chr3 77051274 77051322 -82548461 + (TG)n Simple_repeat Simple_repeat 1 48 0 6 1172 1492 185 97 19 chr3 77051524 77051844 -82547939 - RMER20A LTR ERVK -171 345 1 6 1172 22 35 0 0 chr3 77051844 77051873 -82547910 + AT_rich Low_complexity Low_complexity 1 29 0 6 1172 21 0 0 0 chr3 77052020 77052041 -82547742 + AT_rich Low_complexity Low_complexity 1 21 0 7 1172 2067 247 71 10 chr3 77052946 77053466 -82546317 + RMER15 LTR ERVL 24 575 0 7 1172 198 103 0 0 chr3 77055371 77055400 -82544383 + (TAAA)n Simple_repeat Simple_repeat 4 32 0 7 1172 236 297 75 21 chr3 77055669 77055762 -82544021 - L1M5 LINE L1 -1232 4914 4817 7 1172 7054 78 21 5 chr3 77055894 77056869 -82542914 - L1Md_F2 LINE L1 -5 6577 5587 7 1172 38715 49 12 3 chr3 77056897 77063158 -82536625 - L1Md_T LINE L1 0 6582 307 7 1172 30071 93 3 15 chr3 77063159 77067052 -82532731 - L1Md_F LINE L1 -304 5579 1713 7 1172 1335 56 0 0 chr3 77067052 77067230 -82532553 - L1Md_A LINE L1 0 6582 6405 7 1172 30071 117 42 6 chr3 77067230 77068567 -82531216 - L1Md_F LINE L1 -4171 1712 344 7 1172 825 212 22 32 chr3 77068782 77068967 -82530816 + ORR1D1 LTR MaLR 7 189 -185 7 1172 225 182 0 0 chr3 77068967 77069022 -82530761 + (TCTCTG)n Simple_repeat Simple_repeat 6 60 0 7 1172 1003 212 51 24 chr3 77069022 77069279 -82530504 + ORR1D1 LTR MaLR 69 374 0 8 1172 479 226 0 0 chr3 77069456 77069577 -82530206 + Lx5 LINE L1 6376 6520 -538 8 146 975 246 47 3 chr3 77069908 77070373 -82529410 - L1_Mur3 LINE L1 -4375 1505 1024 8 1173 12193 195 133 14 chr3 77070376 77071826 -82527957 + L1_Mus3 LINE L1 2181 4138 -1745 8 1173 378 0 0 0 chr3 77071826 77071868 -82527915 + (TAAA)n Simple_repeat Simple_repeat 1 42 0 8 1173 12193 133 20 6 chr3 77071868 77074328 -82525455 + L1_Mus3 LINE L1 4134 6629 -9 8 1173 3443 186 68 5 chr3 77074333 77074387 -82525396 + L1_Mur3 LINE L1 3266 3323 -2557 8 1173 459 0 0 0 chr3 77074387 77074438 -82525345 + (TG)n Simple_repeat Simple_repeat 2 52 0 8 1173 3443 186 68 5 chr3 77074438 77074948 -82524835 + L1_Mur3 LINE L1 3324 3852 -2028 8 1173 315 0 0 0 chr3 77074948 77074983 -82524800 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 8 1173 3443 186 68 5 chr3 77074983 77075197 -82524586 + L1_Mur3 LINE L1 3853 4092 -1788 8 1173 451 253 103 0 chr3 77075221 77075367 -82524416 - Lx5 LINE L1 0 7050 6890 8 1173 276 30 0 0 chr3 77075584 77075617 -82524166 + (TG)n Simple_repeat Simple_repeat 2 34 0 8 1173 183 129 0 0 chr3 77075619 77075650 -82524133 + (TA)n Simple_repeat Simple_repeat 1 31 0 9 1173 8261 32 0 0 chr3 77076761 77077987 -82521796 - L1Md_T LINE L1 -2 6580 5355 9 1173 5040 8 3 0 chr3 77077985 77078570 -82521213 + L1_Mm LINE L1 3891 4477 -1406 9 1173 1046 359 50 33 chr3 77078815 77079547 -82520236 - Lx8 LINE L1 -359 7114 6370 9 1173 694 264 287 3 chr3 77079608 77079901 -82519882 - MTC LTR MaLR -44 377 2 9 1173 258 32 0 0 chr3 77079902 77079933 -82519850 + (A)n Simple_repeat Simple_repeat 1 31 0 9 1173 4800 190 62 57 chr3 77080074 77081171 -82518612 + RLTR25A LTR ERVK 1 1103 0 9 1173 2454 311 77 27 chr3 77081292 77082322 -82517461 + Lx8 LINE L1 6257 7337 -136 9 1173 338 258 214 31 chr3 77082494 77082718 -82517065 + Tigger5 DNA MER2_type 2142 2406 0 9 1173 263 333 29 0 chr3 77084743 77084812 -82514971 + tRNA-Ala-GCA tRNA tRNA 1 71 -4 9 1173 860 74 0 8 chr3 77084968 77085090 -82514693 + (GAAA)n Simple_repeat Simple_repeat 4 124 0 1 1173 944 315 132 25 chr3 77085095 77085618 -82514165 - Lx8 LINE L1 -626 6847 6269 1 1173 246 364 0 0 chr3 77085657 77085723 -82514060 + ID4_ SINE ID 18 83 0 1 1173 30 0 0 0 chr3 77085756 77085786 -82513997 + AT_rich Low_complexity Low_complexity 1 30 0 1 1173 17350 126 43 22 chr3 77086811 77089627 -82510156 - L1VL1 LINE L1 -1589 4294 1394 1 1173 1189 41 0 13 chr3 77089627 77089776 -82510007 - B1_Mm SINE Alu 0 147 1 1 1173 17350 126 43 22 chr3 77089776 77089963 -82509820 - L1VL1 LINE L1 -4490 1393 1225 1 1173 4798 71 8 14 chr3 77089963 77090617 -82509166 - L1Md_F2 LINE L1 0 6582 5933 1 1173 17350 233 58 160 chr3 77090617 77091710 -82508073 - L1VL1 LINE L1 -5414 1224 300 1 1173 32 43 0 0 chr3 77091791 77091837 -82507946 + AT_rich Low_complexity Low_complexity 1 46 0 1 1173 2424 150 6 8 chr3 77093034 77093454 -82506329 + Lx2A1 LINE L1 6366 6932 -76 1 1173 25 95 0 0 chr3 77093485 77093559 -82506224 + AT_rich Low_complexity Low_complexity 1 74 0 1 1173 494 138 9 0 chr3 77093665 77093774 -82506009 + (TC)n Simple_repeat Simple_repeat 1 110 0 1 1173 225 94 0 0 chr3 77093774 77093806 -82505977 + (TG)n Simple_repeat Simple_repeat 1 32 0 1 1173 835 150 83 6 chr3 77094064 77094245 -82505538 - Lx LINE L1 -3 6651 6457 1 1173 22 0 0 0 chr3 77094941 77094963 -82504820 + AT_rich Low_complexity Low_complexity 1 22 0 1 1173 201 74 0 0 chr3 77095143 77095170 -82504613 + (T)n Simple_repeat Simple_repeat 1 27 0 1 1173 22 0 0 0 chr3 77095398 77095420 -82504363 + AT_rich Low_complexity Low_complexity 1 22 0 1 1173 754 232 17 0 chr3 77095784 77095965 -82503818 + Lx9 LINE L1 7252 7435 -209 1 1173 1106 252 110 25 chr3 77096802 77097156 -82502627 + ORR1C2 LTR MaLR 1 384 0 1 1173 1138 68 0 14 chr3 77097274 77097422 -82502361 + B1_Mm SINE Alu 1 146 -1 1 1173 403 286 120 7 chr3 77097444 77097684 -82502099 - L1_Mur3 LINE L1 -1869 3978 3696 1 1173 2539 273 83 68 chr3 77097679 77097786 -82501997 - RMER1C Other Other -17 1325 1194 1 1173 285 29 0 0 chr3 77097786 77097820 -82501963 + (CAAAA)n Simple_repeat Simple_repeat 1 34 0 1 1173 2539 273 83 68 chr3 77097820 77098650 -82501133 - RMER1C Other Other -149 1193 374 1 1173 271 371 0 0 chr3 77098935 77099040 -82500743 - RMER1B Other Other -913 153 49 1 1173 752 315 43 12 chr3 77099130 77099387 -82500396 - RMER1B Other Other -207 859 595 1 1173 344 286 47 5 chr3 77099432 77099649 -82500134 - L1_Mur3 LINE L1 -2387 3756 3501 1 1173 484 321 20 69 chr3 77099741 77099945 -82499838 - B3A SINE B2 -1 197 4 1 1173 253 313 83 61 chr3 77099949 77100493 -82499290 - L1_Mur3 LINE L1 -2449 3431 2876 1 1173 7577 79 2 0 chr3 77100966 77102110 -82497673 - L1_Mus1 LINE L1 -1 6566 5421 1 1173 917 47 8 0 chr3 77102369 77102498 -82497285 + L1Md_T LINE L1 6453 6582 0 1 1173 2740 112 12 17 chr3 77102780 77103189 -82496594 - MTB_Mm LTR MaLR 0 407 1 1 1173 285 327 87 29 chr3 77103207 77103311 -82496472 + ID_B1 SINE B4 78 187 -37 1 1173 939 114 0 0 chr3 77103452 77103627 -82496156 + (GA)n Simple_repeat Simple_repeat 1 175 0 1 1173 28 61 0 0 chr3 77104028 77104077 -82495706 + AT_rich Low_complexity Low_complexity 1 49 0 1 1173 219 146 0 47 chr3 77104574 77104617 -82495166 + T-rich Low_complexity Low_complexity 2 42 0 1 1173 286 326 12 0 chr3 77104943 77105029 -82494754 + MTE2b LTR MaLR 1 87 -292 1 1173 874 314 4 17 chr3 77105016 77105249 -82494534 + MTE2b LTR MaLR 48 277 -102 1 1173 7032 108 29 12 chr3 77105261 77106367 -82493416 - Lx LINE L1 -6 6648 5520 1 1173 1145 57 0 0 chr3 77106519 77106659 -82493124 - B1_Mm SINE Alu -6 141 2 1 1173 21 57 0 0 chr3 77107138 77107173 -82492610 + AT_rich Low_complexity Low_complexity 1 35 0 1 1173 697 350 65 16 chr3 77107444 77107766 -82492017 + ORR1D2 LTR MaLR 1 338 -32 1 1173 3344 74 9 2 chr3 77107767 77108212 -82491571 + RLTR1C LTR ERV1 56 503 0 1 1173 32 82 0 10 chr3 77110723 77110761 -82489022 + AT_rich Low_complexity Low_complexity 1 38 0 1 1173 2648 146 21 2 chr3 77110761 77111194 -82488589 + Lx3B LINE L1 6529 6969 -4 1 1173 32 82 0 10 chr3 77111194 77111254 -82488529 + AT_rich Low_complexity Low_complexity 1 60 0 1 1173 24 32 0 0 chr3 77111290 77111321 -82488462 + AT_rich Low_complexity Low_complexity 1 31 0 1 1173 232 394 0 0 chr3 77111536 77111607 -82488176 + B3A SINE B2 66 136 -62 1 1173 5087 62 0 1 chr3 77111649 77112297 -82487486 - L1Md_F2 LINE L1 0 6582 5936 1 1173 488 123 28 9 chr3 77112298 77112405 -82487378 - L1_Mus4 LINE L1 -12 6624 6516 1 1173 1054 69 13 40 chr3 77112422 77112573 -82487210 - B1_Mus1 SINE Alu 0 148 2 1 1173 301 82 0 0 chr3 77113230 77113279 -82486504 - Lx2 LINE L1 -1 6996 6948 1 1173 5868 53 0 5 chr3 77113470 77114210 -82485573 - L1Md_F2 LINE L1 0 6582 5847 1 1173 2223 195 105 43 chr3 77114238 77114886 -82484897 - RMER6C LTR ERVK -2 688 1 1 1173 25 0 0 0 chr3 77115555 77115580 -82484203 + AT_rich Low_complexity Low_complexity 1 25 0 1 1173 201 39 0 0 chr3 77115628 77115654 -82484129 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 1 1173 315 0 0 0 chr3 77116370 77116405 -82483378 + (CA)n Simple_repeat Simple_repeat 2 36 0 1 1173 1752 270 28 12 chr3 77116664 77117166 -82482617 - Lx9 LINE L1 -354 7290 6781 1 1173 568 242 43 141 chr3 77117165 77117540 -82482243 + Lx9 LINE L1 7300 7637 -7 1 1173 387 0 0 0 chr3 77118044 77118087 -82481696 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 1173 22 0 0 0 chr3 77119317 77119339 -82480444 + AT_rich Low_complexity Low_complexity 1 22 0 1 1173 191 36 36 0 chr3 77119757 77119785 -82479998 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 1 1173 2682 139 17 26 chr3 77119806 77120139 -82479644 + Lx2 LINE L1 6535 6860 -137 1 1173 3743 121 5 12 chr3 77120139 77120709 -82479074 - RMER2 LTR ERV1 0 567 2 1 1173 2682 139 17 26 chr3 77120709 77120841 -82478942 + Lx2 LINE L1 6861 6996 -1 1 1173 203 250 8 51 chr3 77120846 77120964 -82478819 + (TAAA)n Simple_repeat Simple_repeat 2 114 0 1 1173 249 200 0 59 chr3 77120877 77120962 -82478821 + A-rich Low_complexity Low_complexity 3 82 0 1 1173 22 35 0 0 chr3 77121172 77121201 -82478582 + AT_rich Low_complexity Low_complexity 1 29 0 1 1173 783 68 8 63 chr3 77121404 77121559 -82478224 + MTB LTR MaLR 200 344 -56 1 1173 338 264 109 33 chr3 77121575 77121759 -82478024 + L1MA6 LINE L1 5953 6150 -150 1 1173 966 121 0 0 chr3 77121906 77122047 -82477736 + B1_Mus1 SINE Alu 1 141 -7 1 1173 499 71 24 0 chr3 77122052 77122137 -82477646 + (CAAA)n Simple_repeat Simple_repeat 2 88 0 1 1173 730 292 40 45 chr3 77122190 77122437 -82477346 - RMER15 LTR ERVL -127 448 203 1 1173 378 0 0 0 chr3 77122515 77122557 -82477226 + (TTTA)n Simple_repeat Simple_repeat 2 43 0 1 1173 5237 153 49 10 chr3 77122576 77123498 -82476285 + RMER17B LTR ERVK 1 958 0 1 1173 278 247 33 22 chr3 77123583 77123674 -82476109 - URR1B DNA MER1_type 0 225 134 1 1173 1404 128 39 0 chr3 77123674 77123908 -82475875 + Lx2A1 LINE L1 6756 6998 -10 1 1173 591 134 42 8 chr3 77123906 77124026 -82475757 + Lx3A LINE L1 6853 6976 -5 1 1173 240 307 21 106 chr3 77124067 77124079 -82475704 + CYRA11_Mm Unknown Y-chromosome 268 319 -298 1 1173 621 221 0 17 chr3 77124079 77124194 -82475589 - URR1B DNA MER1_type -108 117 5 1 1173 240 307 21 106 chr3 77124194 77124209 -82475574 + CYRA11_Mm Unknown Y-chromosome 320 397 -220 1 1173 241 364 102 49 chr3 77125333 77125538 -82474245 - B3 SINE B2 0 216 1 1 1173 669 158 57 7 chr3 77125613 77125753 -82474030 - Lx2 LINE L1 0 6997 6851 1 1173 1109 62 0 14 chr3 77125895 77126042 -82473741 + B1_Mm SINE Alu 2 146 -1 1 1173 574 321 52 39 chr3 77126212 77126453 -82473330 + MTD LTR MaLR 5 270 -151 1 1173 200 191 12 0 chr3 77127794 77127878 -82471905 + (TA)n Simple_repeat Simple_repeat 2 86 0 1 1173 279 271 27 20 chr3 77127909 77128056 -82471727 + (TCTA)n Simple_repeat Simple_repeat 1 148 0 1 1173 6794 3 0 0 chr3 77128070 77128822 -82470961 + L1Md_A LINE L1 5829 6580 -2 1 1173 21 36 0 0 chr3 77129033 77129061 -82470722 + AT_rich Low_complexity Low_complexity 1 28 0 1 1173 230 229 0 35 chr3 77129631 77129717 -82470066 + CT-rich Low_complexity Low_complexity 3 85 0 1 1173 3381 247 29 6 chr3 77129985 77130768 -82469015 + Lx5 LINE L1 6249 7049 -1 1 1173 679 286 38 33 chr3 77131073 77131283 -82468500 - Lx6 LINE L1 -14 7446 7236 1 1173 617 318 57 111 chr3 77131963 77132349 -82467434 + MTE2a LTR MaLR 1 365 -14 1 1173 720 54 0 0 chr3 77133120 77133213 -82466570 + (TTTC)n Simple_repeat Simple_repeat 1 93 0 1 1173 245 299 46 9 chr3 77134452 77134560 -82465223 + L1M2c LINE L1 1802 1913 -5296 1 1173 408 281 82 38 chr3 77134628 77134920 -82464863 + L1M2c LINE L1 2183 2487 -4722 1 1173 320 308 35 15 chr3 77135304 77135502 -82464281 + L1M2c LINE L1 3351 3552 -3653 1 1173 362 241 60 0 chr3 77136088 77136171 -82463612 + MTEa LTR MaLR 1 88 -291 1 1173 961 176 97 5 chr3 77136171 77136377 -82463406 + Lx LINE L1 6425 6649 -5 1 1173 730 299 19 107 chr3 77136388 77136648 -82463135 + MTEa LTR MaLR 86 335 -44 1 1173 2433 41 3 31 chr3 77136648 77136975 -82462808 - L1Md_F2 LINE L1 0 6582 6265 1 1173 730 299 19 107 chr3 77136975 77137032 -82462751 + MTEa LTR MaLR 336 375 -4 1 1173 1134 290 92 45 chr3 77137036 77137483 -82462300 + MTEa-int LTR MaLR 1 468 -1112 1 1173 573 92 0 0 chr3 77137523 77137599 -82462184 - Lx3A LINE L1 -557 6424 6349 1 1173 523 284 12 128 chr3 77137601 77137715 -82462068 + MTEa-int LTR MaLR 1353 1452 -128 1 1173 294 50 0 0 chr3 77137715 77137755 -82462028 + (TTTTG)n Simple_repeat Simple_repeat 1 40 0 1 1173 1117 66 0 0 chr3 77137765 77137902 -82461881 - B1_Mus2 SINE Alu -10 137 1 1 1173 523 284 12 128 chr3 77137902 77138034 -82461749 + MTEa-int LTR MaLR 1458 1580 0 1 1173 312 343 0 0 chr3 77138035 77138134 -82461649 + MTEa LTR MaLR 2 100 -279 1 1173 1071 51 0 0 chr3 77138361 77138498 -82461285 - L1Md_F3 LINE L1 -811 5072 4936 1 1173 4391 46 11 6 chr3 77138499 77139047 -82460736 + L1Md_F3 LINE L1 5036 5586 -297 1 1173 8281 36 2 1 chr3 77139047 77140044 -82459739 + L1Md_F3 LINE L1 5587 6584 0 1 1173 252 333 163 0 chr3 77140296 77140419 -82459364 + B1_Mus2 SINE Alu 5 147 0 1 1173 2588 241 26 7 chr3 77140533 77141073 -82458710 + Lx5 LINE L1 6498 7047 -3 1 1173 700 307 102 5 chr3 77141258 77141696 -82458087 + L1M2 LINE L1 5207 5683 -617 1 1173 201 176 0 0 chr3 77142111 77142145 -82457638 + T-rich Low_complexity Low_complexity 1 34 0 1 1173 5850 156 25 12 chr3 77142159 77143188 -82456595 - Lx3B LINE L1 0 6973 5931 1 1173 254 184 0 20 chr3 77143188 77143231 -82456552 + MT2B LTR ERVL 76 117 -416 1 1173 627 286 45 48 chr3 77143246 77143524 -82456259 + MT2B LTR ERVL 99 524 -77 1 1173 535 171 0 0 chr3 77143538 77143649 -82456134 + (TATATG)n Simple_repeat Simple_repeat 6 116 0 1 1173 333 0 0 0 chr3 77143664 77143701 -82456082 + (CA)n Simple_repeat Simple_repeat 2 38 0 2 1173 1983 199 56 0 chr3 77143722 77144099 -82455684 - MTC LTR MaLR -23 398 1 2 1173 392 192 157 30 chr3 77144099 77144233 -82455550 - MTC-int LTR MaLR 0 1258 1108 2 1173 2123 170 125 4 chr3 77144233 77144753 -82455030 - L1_Mur3 LINE L1 -446 5434 4852 2 1173 706 306 36 66 chr3 77144759 77145181 -82454602 - Lx6 LINE L1 -200 7260 6478 2 1173 1180 269 162 18 chr3 77145177 77145704 -82454079 - Lx6 LINE L1 -687 6363 5740 2 1173 4156 202 45 10 chr3 77145693 77146608 -82453175 + Lx6 LINE L1 4798 5744 -133 2 1173 1621 201 22 46 chr3 77146606 77147017 -82452766 - Lx6 LINE L1 -1034 4846 4446 2 1173 1950 229 23 16 chr3 77147012 77147674 -82452109 + Lx6 LINE L1 5408 6084 -1376 2 1173 1965 291 129 15 chr3 77147665 77148405 -82451378 + Lx6 LINE L1 6578 7415 -45 2 1173 3054 88 5 0 chr3 77148405 77148824 -82450959 + BGLII LTR ERVK 1 421 0 2 1173 1965 291 129 15 chr3 77148824 77148876 -82450907 + Lx6 LINE L1 7416 7460 0 2 1173 3541 234 85 27 chr3 77148882 77149773 -82450010 - MTC-int LTR MaLR -159 1099 157 2 1173 233 119 24 0 chr3 77149800 77149842 -82449941 + (CTG)n Simple_repeat Simple_repeat 2 44 0 2 1173 354 296 66 28 chr3 77149842 77150014 -82449769 - B3A SINE B2 -14 184 5 2 1173 310 346 0 0 chr3 77150023 77150127 -82449656 - ID_B1 SINE B4 -2 222 119 2 1173 360 0 0 0 chr3 77150417 77150457 -82449326 + (TA)n Simple_repeat Simple_repeat 2 41 0 2 1173 859 267 43 19 chr3 77150667 77150877 -82448906 - Lx5 LINE L1 -689 6361 6147 2 1173 2100 253 96 26 chr3 77150877 77151481 -82448302 + Lx5 LINE L1 6356 7001 -49 2 1173 1337 262 55 10 chr3 77151998 77152399 -82447384 - MTC LTR MaLR 0 421 3 2 1173 993 250 220 27 chr3 77152806 77153218 -82446565 + RMER19A LTR ERVK 60 580 -157 2 1173 923 195 32 47 chr3 77153218 77153609 -82446174 - L1_Mur1 LINE L1 -6160 822 196 2 1173 1387 155 39 0 chr3 77153599 77153883 -82445900 - L1_Mur3 LINE L1 -383 5497 5203 2 1173 4591 218 51 36 chr3 77153897 77155087 -82444696 - Lx2B LINE L1 -5 6995 5788 2 1173 3020 153 141 0 chr3 77155090 77155259 -82444524 + L1_Mur2 LINE L1 5095 5264 -613 2 1173 189 0 0 0 chr3 77155259 77155280 -82444503 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 2 1173 3020 153 141 0 chr3 77155280 77155690 -82444093 + L1_Mur2 LINE L1 5265 5755 -122 2 1173 1396 201 34 25 chr3 77155695 77156052 -82443731 - L1_Mur3 LINE L1 -673 5207 4848 2 1173 237 270 16 0 chr3 77156407 77156470 -82443313 + CT-rich Low_complexity Low_complexity 2 65 0 2 1173 234 0 0 0 chr3 77156868 77156894 -82442889 + (ATG)n Simple_repeat Simple_repeat 2 27 0 2 1173 2173 238 48 24 chr3 77157556 77158094 -82441689 - Lx7 LINE L1 -366 7330 6780 2 1173 242 238 143 0 chr3 77158148 77158232 -82441551 - Lx7 LINE L1 -924 6772 6677 2 1173 259 356 123 11 chr3 77158240 77158308 -82441475 - Lx8 LINE L1 -1038 6435 6368 2 1173 204 40 0 0 chr3 77158308 77158333 -82441450 + (TAA)n Simple_repeat Simple_repeat 1 25 0 2 1173 259 356 123 11 chr3 77158333 77158443 -82441340 - Lx8 LINE L1 -1106 6367 6237 2 1173 355 368 41 90 chr3 77159905 77160171 -82439612 - B4A SINE B4 -32 260 8 2 1173 516 56 0 0 chr3 77160558 77160630 -82439153 + (TG)n Simple_repeat Simple_repeat 1 72 0 2 1173 7379 128 26 19 chr3 77160946 77161159 -82438624 - L1_Mur2 LINE L1 -130 5747 5529 2 1173 2333 93 71 3 chr3 77161159 77161495 -82438288 - RLTR10D LTR ERVK 0 359 1 2 1173 7379 128 26 19 chr3 77161495 77162525 -82437258 - L1_Mur2 LINE L1 -349 5528 4494 2 1173 2132 145 5 34 chr3 77162517 77162895 -82436888 + Lx4A LINE L1 5750 6116 -942 2 1173 4482 121 14 18 chr3 77162903 77163612 -82436171 - Lx3A LINE L1 -324 6657 5952 2 1173 1136 158 62 25 chr3 77163612 77163852 -82435931 + Lx3B LINE L1 6723 6971 -2 2 1173 199 73 73 0 chr3 77165794 77165835 -82433948 + (CAAAA)n Simple_repeat Simple_repeat 3 46 0 2 1173 306 0 0 0 chr3 77166367 77166401 -82433382 + (T)n Simple_repeat Simple_repeat 1 34 0 2 1173 520 318 83 0 chr3 77168348 77168540 -82431243 - B3 SINE B2 -2 214 7 2 1173 4681 82 31 0 chr3 77168540 77169176 -82430607 + L1_Mus1 LINE L1 5912 6567 0 2 1173 2845 85 19 31 chr3 77169223 77169648 -82430135 - BGLII LTR ERVK -1 420 1 2 1173 222 209 0 0 chr3 77169919 77169962 -82429821 + (CA)n Simple_repeat Simple_repeat 2 44 0 2 1173 232 240 0 0 chr3 77169971 77170021 -82429762 - Lx7 LINE L1 -499 7197 7148 2 1173 478 0 0 31 chr3 77170042 77170106 -82429677 + (TTTA)n Simple_repeat Simple_repeat 3 64 0 2 1173 1142 52 0 0 chr3 77170106 77170242 -82429541 - B1_Mus1 SINE Alu -11 137 2 2 1173 22 56 0 0 chr3 77170349 77170385 -82429398 + AT_rich Low_complexity Low_complexity 1 36 0 2 1173 220 358 0 36 chr3 77170814 77170898 -82428885 - ID_B1 SINE B4 -56 168 88 2 1173 443 376 67 9 chr3 77171044 77171373 -82428410 + MLT1A0 LTR MaLR 19 365 0 2 1173 23 54 0 0 chr3 77171373 77171410 -82428373 + AT_rich Low_complexity Low_complexity 1 37 0 2 1173 3843 101 34 97 chr3 77171596 77172398 -82427385 + RMER17A LTR ERVK 1 751 0 2 1173 225 0 0 0 chr3 77172593 77172618 -82427165 + (TAAA)n Simple_repeat Simple_repeat 4 28 0 2 1173 269 333 0 79 chr3 77174323 77174450 -82425333 + MTE-int LTR MaLR 449 565 -805 2 1173 378 0 0 0 chr3 77174477 77174519 -82425264 + (TTTA)n Simple_repeat Simple_repeat 3 44 0 2 1173 1082 177 142 20 chr3 77174522 77174776 -82425007 - Lx4B LINE L1 -17 7041 6757 2 1173 2744 47 2 89 chr3 77174783 77175208 -82424575 - RLTR10 LTR ERVK -2 388 1 2 1173 1110 151 137 5 chr3 77175228 77175447 -82424336 - Lx4B LINE L1 -308 6750 6503 2 1173 5279 184 11 90 chr3 77175446 77175622 -82424161 - L1_Mur2 LINE L1 -7 5870 5706 2 1173 207 0 0 0 chr3 77175622 77175645 -82424138 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 2 1173 5279 184 11 90 chr3 77175645 77175942 -82423841 - L1_Mur2 LINE L1 -172 5705 5449 2 1173 3424 90 8 20 chr3 77175942 77176429 -82423354 - L1Md_F2 LINE L1 -14 6568 6088 2 1173 5279 184 11 90 chr3 77176429 77176569 -82423214 - L1_Mur2 LINE L1 -429 5448 5310 2 1173 2174 115 32 12 chr3 77176569 77176788 -82422995 + Lx LINE L1 6297 6526 -128 2 1173 195 42 0 0 chr3 77176788 77176812 -82422971 + (TGGG)n Simple_repeat Simple_repeat 4 27 0 2 1173 2174 115 32 12 chr3 77176812 77176934 -82422849 + Lx LINE L1 6527 6645 -9 2 1173 5279 184 11 90 chr3 77176934 77177556 -82422227 - L1_Mur2 LINE L1 -568 5309 4730 2 1173 383 103 44 0 chr3 77177641 77177709 -82422074 + (CATATA)n Simple_repeat Simple_repeat 2 72 0 2 1173 1657 348 26 15 chr3 77177751 77178413 -82421370 + MTE-int LTR MaLR 793 1461 -119 2 1173 2024 231 65 30 chr3 77179054 77179700 -82420083 + RMER19A LTR ERVK 7 737 0 2 1173 23 54 0 0 chr3 77179957 77179994 -82419789 + AT_rich Low_complexity Low_complexity 1 37 0 2 1173 1611 197 12 24 chr3 77180098 77180431 -82419352 + ORR1A4 LTR MaLR 1 329 0 2 1173 1055 217 18 9 chr3 77180431 77180659 -82419124 + ORR1A4-int LTR MaLR 1 230 -1733 2 1173 1989 142 28 3 chr3 77180659 77180978 -82418805 - ORR1A2 LTR MaLR 0 327 1 2 1173 5348 158 19 6 chr3 77180978 77181878 -82417905 - ORR1A2-int LTR MaLR -19 1944 1033 2 1173 279 79 0 0 chr3 77181887 77181925 -82417858 + (TTAA)n Simple_repeat Simple_repeat 3 40 0 2 1173 28020 107 50 14 chr3 77181925 77187430 -82412353 - Lx3_Mus LINE L1 -16 6993 1268 2 1173 4408 198 61 5 chr3 77187430 77188434 -82411349 - ORR1A2-int LTR MaLR -923 1040 2 2 1173 1898 105 34 115 chr3 77188435 77188791 -82410992 - ORR1A2 LTR MaLR 0 327 1 2 1173 872 180 66 0 chr3 77188791 77188958 -82410825 + ORR1A4-int LTR MaLR 226 403 -1560 2 1173 20394 146 24 42 chr3 77188959 77193154 -82406629 - L1Md_F LINE L1 -1446 4437 324 2 1173 358 256 23 116 chr3 77193210 77193382 -82406401 - L1Md_F LINE L1 -6030 608 453 2 1173 793 185 6 9 chr3 77193402 77193577 -82406206 + ORR1A4-int LTR MaLR 1817 1963 0 2 1173 1647 172 21 56 chr3 77193579 77193918 -82405865 + ORR1A4 LTR MaLR 3 329 0 2 1173 1165 340 3 3 chr3 77193920 77194247 -82405536 - Lx5 LINE L1 -128 6922 6596 2 1173 1045 310 53 5 chr3 77194244 77194727 -82405056 - Lx5 LINE L1 -633 6417 5895 2 1173 3491 48 18 0 chr3 77195331 77195771 -82404012 - L1Md_F2 LINE L1 -14 6568 6121 2 1173 274 319 76 12 chr3 77195881 77196052 -82403731 + L1MCa LINE L1 704 885 -5160 2 1173 556 276 37 15 chr3 77196152 77196288 -82403495 - ID_B1 SINE B4 -1 223 85 2 1173 258 282 14 154 chr3 77196157 77196371 -82403412 + YREP_Mm Unknown Unknown 183 366 -1446 2 1173 417 325 89 16 chr3 77196386 77196634 -82403149 + L1MCa LINE L1 1285 1629 -5031 2 1173 1024 43 14 14 chr3 77197055 77197197 -82402586 + (GAAA)n Simple_repeat Simple_repeat 3 144 0 2 1173 3096 251 46 60 chr3 77197295 77197951 -82401832 + Lx7 LINE L1 4810 5446 -434 2 1173 870 119 0 0 chr3 77197951 77198085 -82401698 + (GGAA)n Simple_repeat Simple_repeat 3 136 0 2 1173 5775 256 46 33 chr3 77198085 77199933 -82399850 + Lx7 LINE L1 5447 7324 -372 2 1173 4020 155 29 1 chr3 77199961 77200645 -82399138 - Lx2 LINE L1 0 6997 6295 2 1173 349 143 0 0 chr3 77200645 77200701 -82399082 + Lx2 LINE L1 6221 6276 -721 2 1173 459 0 0 0 chr3 77200766 77200817 -82398966 + (TG)n Simple_repeat Simple_repeat 1 51 0 2 1173 265 314 24 0 chr3 77200869 77200993 -82398790 + Lx7 LINE L1 7559 7685 -11 2 1173 360 255 51 76 chr3 77201065 77201222 -82398561 + ORR1E LTR MaLR 43 195 -164 2 1173 248 333 21 31 chr3 77201299 77201395 -82398388 + ORR1E LTR MaLR 272 366 -13 2 1174 21 0 0 0 chr3 77202131 77202152 -82397631 + AT_rich Low_complexity Low_complexity 1 21 0 2 1174 27 103 0 0 chr3 77202417 77202514 -82397269 + AT_rich Low_complexity Low_complexity 1 97 0 2 1174 1137 320 100 41 chr3 77204566 77205295 -82394488 - RCHARR1 DNA MER1_type -76 898 127 2 1174 3100 59 49 2 chr3 77205360 77205769 -82394014 - L1Md_F2 LINE L1 -11 6571 6144 2 1174 525 200 64 7 chr3 77205800 77205941 -82393842 + Lx LINE L1 6501 6649 -5 2 1174 627 272 98 94 chr3 77206532 77207322 -82392461 + L1_Mur3 LINE L1 1355 2140 -3707 2 1174 366 326 34 15 chr3 77207374 77207642 -82392141 + L1_Mur3 LINE L1 2324 2596 -3284 2 1174 28 0 0 0 chr3 77207745 77207773 -82392010 + AT_rich Low_complexity Low_complexity 1 28 0 2 1174 1137 243 101 56 chr3 77207847 77208042 -82391741 - Lx2B LINE L1 -5 6995 6776 2 1174 2170 221 163 11 chr3 77208042 77208681 -82391102 + RMER19A LTR ERVK 1 736 -1 2 1174 1137 243 101 56 chr3 77208681 77208844 -82390939 - Lx2B LINE L1 -225 6775 6616 2 1174 198 0 0 0 chr3 77208844 77208866 -82390917 + (TTTTA)n Simple_repeat Simple_repeat 4 25 0 2 1174 778 106 8 8 chr3 77208866 77208999 -82390784 - Lx LINE L1 -15 6639 6507 2 1174 1137 243 101 56 chr3 77208999 77209052 -82390731 - Lx2B LINE L1 -385 6615 6564 2 1174 4624 108 88 12 chr3 77210918 77211671 -82388112 + L1_Mus3 LINE L1 5829 6638 0 2 1174 7371 224 63 72 chr3 77211684 77212940 -82386843 + L1_Mur3 LINE L1 3278 4422 -1458 2 1174 189 0 0 0 chr3 77212940 77212961 -82386822 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 2 1174 7371 224 63 72 chr3 77212961 77214287 -82385496 + L1_Mur3 LINE L1 4423 5838 -42 2 1174 733 263 209 32 chr3 77214383 77214757 -82385026 + Lx6 LINE L1 6995 7434 -26 2 1174 2083 4 0 0 chr3 77214772 77215006 -82384777 + L1Md_A LINE L1 6349 6582 0 2 1174 3650 69 10 4 chr3 77215398 77215877 -82383906 + L1_Mus2 LINE L1 6084 6565 -1 2 1174 599 337 38 42 chr3 77216470 77216733 -82383050 - B4A SINE B4 -18 274 13 2 1174 34 0 0 41 chr3 77216930 77216945 -82382838 + AT_rich Low_complexity Low_complexity 1 15 0 2 1174 1498 88 46 0 chr3 77216945 77217161 -82382622 - L1_Mus2 LINE L1 0 6566 6341 2 1174 34 0 0 41 chr3 77217161 77217194 -82382589 + AT_rich Low_complexity Low_complexity 1 32 0 2 1174 201 152 0 0 chr3 77219394 77219427 -82380356 + A-rich Low_complexity Low_complexity 3 35 0 2 1174 882 298 102 18 chr3 77219529 77219871 -82379912 - MTEb LTR MaLR -3 376 6 2 1174 189 0 0 0 chr3 77220136 77220157 -82379626 + (TTG)n Simple_repeat Simple_repeat 1 21 0 2 1174 1159 344 85 32 chr3 77220669 77221602 -82378181 - Lx8 LINE L1 -384 7089 6108 2 1174 324 120 0 0 chr3 77222199 77222249 -82377534 + (TC)n Simple_repeat Simple_repeat 1 50 0 2 1174 1212 147 0 10 chr3 77222778 77222971 -82376812 + L1VL4 LINE L1 193 383 -5919 2 1174 15690 86 45 11 chr3 77222966 77225346 -82374437 + MusHAL1 LINE L1 249 2708 -4 2 1174 27 29 0 0 chr3 77225346 77225380 -82374403 + AT_rich Low_complexity Low_complexity 1 34 0 2 1174 21 82 0 0 chr3 77225502 77225551 -82374232 + AT_rich Low_complexity Low_complexity 1 49 0 3 1174 262 385 45 9 chr3 77226109 77226219 -82373564 - B1F2 SINE Alu -35 114 1 3 1174 21 0 0 0 chr3 77226934 77226955 -82372828 + AT_rich Low_complexity Low_complexity 1 21 0 3 1174 406 353 70 83 chr3 77228192 77228433 -82371350 + B4A SINE B4 50 287 -5 3 1174 1055 86 6 17 chr3 77228458 77228635 -82371148 + (GGAA)n Simple_repeat Simple_repeat 3 177 0 3 1174 228 296 0 0 chr3 77228636 77228690 -82371093 + GA-rich Low_complexity Low_complexity 4 57 0 3 1174 1172 220 19 11 chr3 77228803 77229070 -82370713 + RLTR24 LTR ERV1 11 279 -250 3 1174 356 98 32 32 chr3 77229169 77229232 -82370551 + RLTR15 LTR ERVK 1 63 -296 3 1174 8380 112 6 2 chr3 77229285 77230558 -82369225 - L1_Mm LINE L1 -3020 2863 1585 3 1174 7248 90 5 14 chr3 77230558 77231886 -82367897 + L1_Mus1 LINE L1 5244 6558 -9 3 1174 1362 183 35 51 chr3 77231888 77232199 -82367584 + RLTR15 LTR ERVK 48 353 -6 3 1174 312 102 0 0 chr3 77232217 77232266 -82367517 + (TG)n Simple_repeat Simple_repeat 2 50 0 3 1174 26 0 0 0 chr3 77232280 77232306 -82367477 + AT_rich Low_complexity Low_complexity 1 26 0 3 1174 825 178 12 0 chr3 77232311 77232474 -82367309 - Lx2 LINE L1 -6 6991 6827 3 1174 341 256 15 53 chr3 77232474 77232606 -82367177 - L1M3 LINE L1 -528 5763 5637 3 1174 22 35 0 0 chr3 77232606 77232635 -82367148 + AT_rich Low_complexity Low_complexity 1 29 0 3 1174 22 88 0 0 chr3 77232764 77232821 -82366962 + AT_rich Low_complexity Low_complexity 1 57 0 3 1174 3554 141 42 2 chr3 77232830 77233400 -82366383 - Lx3B LINE L1 -6 6967 6375 3 1174 254 328 70 11 chr3 77233400 77233585 -82366198 - L1M3 LINE L1 -1131 5009 4814 3 1174 205 102 0 58 chr3 77233828 77233880 -82365903 + A-rich Low_complexity Low_complexity 3 51 0 3 1174 1190 271 59 32 chr3 77233881 77234254 -82365529 - MTD LTR MaLR -31 388 6 3 1174 186 133 0 0 chr3 77234303 77234333 -82365450 + (TAA)n Simple_repeat Simple_repeat 2 31 0 3 1174 216 0 0 0 chr3 77234516 77234540 -82365243 + (A)n Simple_repeat Simple_repeat 1 24 0 3 1174 32 26 0 0 chr3 77234581 77234620 -82365163 + AT_rich Low_complexity Low_complexity 1 39 0 3 1174 310 348 65 35 chr3 77235375 77235607 -82364176 - MER89 LTR ERV1 -57 502 264 3 1174 1092 300 40 9 chr3 77236733 77237079 -82362704 - MTEa LTR MaLR -8 371 15 3 1174 1116 67 0 0 chr3 77238182 77238332 -82361451 + L1Md_A LINE L1 6433 6582 0 3 1174 873 225 51 21 chr3 77238495 77238731 -82361052 + MTD LTR MaLR 177 419 0 3 1174 1324 359 75 43 chr3 77238755 77239789 -82359994 + Lx8 LINE L1 6404 7469 -4 3 1174 267 313 60 18 chr3 77239804 77239970 -82359813 - RMER5 LTR ERV1 -319 215 43 3 1174 758 249 11 0 chr3 77239991 77240172 -82359611 + Lx3C LINE L1 6626 6808 -168 3 1174 587 237 17 17 chr3 77240201 77240321 -82359462 - B1_Mur1 SINE Alu -12 137 18 3 1174 475 229 0 79 chr3 77240749 77240863 -82358920 + MT2B LTR ERVL 153 257 -344 3 1174 959 101 0 0 chr3 77240766 77240895 -82358888 + B1_Mm SINE Alu 6 134 -13 3 1174 288 0 0 0 chr3 77240895 77240927 -82358856 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 3 1174 504 130 0 0 chr3 77241592 77241684 -82358099 + (CA)n Simple_repeat Simple_repeat 1 92 0 3 1174 257 236 83 0 chr3 77241782 77241854 -82357929 - L1_Rod LINE L1 -394 5453 5376 3 1174 610 322 92 25 chr3 77242074 77242596 -82357187 - Lx7 LINE L1 -187 7286 6719 3 1174 1338 325 71 29 chr3 77242652 77243525 -82356258 + Lx8 LINE L1 5713 6622 -851 3 1174 23 33 0 0 chr3 77244429 77244459 -82355324 + AT_rich Low_complexity Low_complexity 1 30 0 3 1174 343 38 0 36 chr3 77245090 77245145 -82354638 + (CA)n Simple_repeat Simple_repeat 2 54 0 3 1174 300 284 107 54 chr3 77245177 77245419 -82354364 + L1MC3 LINE L1 7401 7655 -130 3 1174 351 260 10 0 chr3 77245727 77245823 -82353960 - MYSERV-int LTR ERVK -2126 4424 4328 3 1174 1415 81 5 5 chr3 77245841 77246040 -82353743 - MTB LTR MaLR 0 400 202 3 1174 8017 42 0 0 chr3 77246040 77247111 -82352672 - L1Md_T LINE L1 0 6582 5539 3 1174 1419 94 5 5 chr3 77247092 77247295 -82352488 - L1Md_T LINE L1 -1197 4686 4484 3 1174 8666 20 1 4 chr3 77247283 77248316 -82351467 + L1Md_T LINE L1 3447 4476 -1407 3 1174 1226 72 43 16 chr3 77248316 77248500 -82351283 - MTB LTR MaLR -207 189 1 3 1174 6865 91 28 71 chr3 77248500 77249648 -82350135 + MTB-int LTR MaLR 1 1098 0 3 1174 2540 86 14 88 chr3 77249648 77249840 -82349943 + MTB LTR MaLR 1 181 -219 3 1174 7915 55 0 0 chr3 77249840 77250824 -82348959 + L1Md_T LINE L1 5599 6582 0 3 1174 2540 86 14 88 chr3 77250824 77250912 -82348871 + MTB LTR MaLR 182 260 -140 3 1174 1278 115 5 0 chr3 77250912 77251104 -82348679 - B2_Mm1t SINE B2 0 193 1 3 1174 2540 86 14 88 chr3 77251104 77251254 -82348529 + MTB LTR MaLR 261 400 0 3 1174 356 240 28 28 chr3 77251258 77251365 -82348418 - MYSERV6-int LTR ERVK -4413 4546 4440 3 1174 445 165 101 16 chr3 77251368 77251497 -82348286 - MYSERV6-int LTR ERVK -6179 2780 2641 3 1174 291 157 0 0 chr3 77251523 77251574 -82348209 + T-rich Low_complexity Low_complexity 1 51 0 3 1174 376 302 100 42 chr3 77252022 77252212 -82347571 - RMER20B LTR ERVK -271 356 156 3 1174 455 280 115 50 chr3 77252738 77252956 -82346827 + Lx8 LINE L1 7241 7472 -1 3 1174 541 333 80 126 chr3 77253457 77253759 -82346024 + B4A SINE B4 5 292 0 3 1174 225 300 67 30 chr3 77254322 77254456 -82345327 + L1ME1 LINE L1 6020 6158 -21 3 1174 27 92 0 0 chr3 77254520 77254596 -82345187 + AT_rich Low_complexity Low_complexity 1 76 0 3 1174 1097 71 0 43 chr3 77254971 77255132 -82344651 + L1_Mus1 LINE L1 6413 6566 -1 3 1174 360 273 37 61 chr3 77255605 77255769 -82344014 + MER97c DNA MER1_type? 549 708 -382 3 1174 1422 281 65 32 chr3 77255937 77256493 -82343290 + Lx8 LINE L1 6284 6857 -616 3 1174 195 69 0 0 chr3 77256493 77256522 -82343261 + (T)n Simple_repeat Simple_repeat 1 29 0 3 1174 1555 256 52 12 chr3 77256648 77257051 -82342732 + MTD LTR MaLR 1 419 0 3 1174 191 61 0 29 chr3 77257577 77257611 -82342172 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 3 1174 1134 98 0 6 chr3 77257613 77257777 -82342006 - L1_Mm LINE L1 -2403 3480 3318 3 1174 299 192 50 88 chr3 77257777 77257857 -82341926 + RLTR25A LTR ERVK 507 583 -520 3 1174 730 100 0 43 chr3 77257789 77257904 -82341879 + B1_Mus1 SINE Alu 39 148 0 3 1174 674 334 134 46 chr3 77258282 77258907 -82340876 - RMER15-int LTR ERVL -147 4852 4173 3 1174 866 345 97 44 chr3 77259476 77260025 -82339758 - RMER15-int LTR ERVL -3165 1834 1257 3 1174 586 133 9 9 chr3 77260056 77260170 -82339613 + (TATATG)n Simple_repeat Simple_repeat 2 115 0 3 1174 843 302 26 35 chr3 77260200 77260546 -82339237 - RMER15-int LTR ERVL -3778 1221 879 3 1174 212 154 0 19 chr3 77260572 77260625 -82339158 + (TA)n Simple_repeat Simple_repeat 1 52 0 3 1174 447 410 0 0 chr3 77260630 77260874 -82338909 - RMER15-int LTR ERVL -4149 850 607 3 1174 430 321 24 95 chr3 77260878 77261088 -82338695 - B3A SINE B2 -12 204 10 3 1174 374 279 64 46 chr3 77261703 77261876 -82337907 - RMER15 LTR ERVL -22 553 378 3 1174 242 333 63 54 chr3 77263178 77263289 -82336494 + PB1D10 SINE Alu 5 116 -1 3 1174 236 262 0 0 chr3 77263465 77263507 -82336276 - Alu SINE Alu -97 78 37 3 1174 219 69 0 0 chr3 77263536 77263565 -82336218 + (TCTCTG)n Simple_repeat Simple_repeat 2 30 0 3 1174 256 307 125 29 chr3 77264012 77264116 -82335667 - PB1D9 SINE Alu -5 115 2 3 1174 476 178 84 0 chr3 77264295 77264402 -82335381 - Lx6 LINE L1 -11 7449 7334 3 1174 306 87 0 0 chr3 77265039 77265085 -82334698 + (CA)n Simple_repeat Simple_repeat 2 47 0 3 1174 327 286 36 0 chr3 77265620 77265788 -82333995 + (TA)n Simple_repeat Simple_repeat 1 174 0 3 1174 424 326 7 34 chr3 77265905 77266051 -82333732 - B1_Mur2 SINE Alu -6 143 2 3 1174 1272 219 26 103 chr3 77266830 77267207 -82332576 + RMER13B LTR ERVK 1 348 -560 3 1174 32902 88 4 6 chr3 77267207 77271813 -82327970 - L1Md_F2 LINE L1 -17 6565 1978 3 1174 234 0 0 0 chr3 77271813 77271839 -82327944 + (TTG)n Simple_repeat Simple_repeat 2 27 0 3 1174 32902 110 36 1 chr3 77271839 77273357 -82326426 - L1Md_F2 LINE L1 -3906 1977 394 3 1174 976 207 42 5 chr3 77273357 77273546 -82326237 + RMER13A LTR ERVK 290 485 -375 3 1174 727 221 42 12 chr3 77273548 77273713 -82326070 + RMER13A LTR ERVK 739 908 0 3 1174 225 0 0 0 chr3 77273951 77273976 -82325807 + (T)n Simple_repeat Simple_repeat 1 25 0 3 1174 2440 204 63 80 chr3 77274670 77275292 -82324491 - RMER19C LTR ERVK 0 611 1 3 1174 272 83 21 0 chr3 77275552 77275600 -82324183 + (GA)n Simple_repeat Simple_repeat 2 50 0 3 1174 6494 175 24 22 chr3 77275690 77276950 -82322833 - Lx2B LINE L1 -13 6987 5726 3 1174 497 158 0 0 chr3 77276951 77277033 -82322750 + 4.5SRNA scRNA scRNA 5 86 -8 3 1174 1937 52 16 0 chr3 77277052 77277303 -82322480 - L1Md_F3 LINE L1 -2 6582 6328 3 1174 4546 117 69 1 chr3 77277482 77278193 -82321590 - L1_Mus3 LINE L1 -7 6631 5873 3 1174 594 301 80 5 chr3 77278200 77278387 -82321396 - B3 SINE B2 -6 210 10 3 1174 277 294 11 11 chr3 77278395 77278488 -82321295 + MLT1A0 LTR MaLR 229 364 -44 3 1174 210 154 0 0 chr3 77278541 77278580 -82321203 + A-rich Low_complexity Low_complexity 1 39 0 3 1174 225 0 0 0 chr3 77278760 77278785 -82320998 + (TTA)n Simple_repeat Simple_repeat 1 25 0 3 1174 1143 239 76 13 chr3 77279873 77280187 -82319596 + L1_Mur3 LINE L1 4652 4985 -895 3 1174 864 291 16 4 chr3 77280215 77280470 -82319313 + Lx7 LINE L1 6685 6942 -754 3 1174 723 323 96 25 chr3 77280470 77280940 -82318843 + Lx8 LINE L1 6128 6630 -843 3 1174 26 64 0 0 chr3 77281197 77281244 -82318539 + AT_rich Low_complexity Low_complexity 1 47 0 3 1174 383 345 52 58 chr3 77281251 77281405 -82318378 - RSINE1 SINE B4 -10 155 3 3 1174 7449 185 17 18 chr3 77281469 77282951 -82316832 - Lx2B LINE L1 -1393 5657 4178 3 1174 6873 164 56 11 chr3 77282949 77283340 -82316443 + Lx2A1 LINE L1 5648 6044 -964 3 1174 492 18 0 0 chr3 77283340 77283397 -82316386 + (GA)n Simple_repeat Simple_repeat 1 57 0 3 1174 6873 164 56 11 chr3 77283397 77284298 -82315485 + Lx2A1 LINE L1 6045 6997 -11 3 1174 369 0 0 0 chr3 77284298 77284339 -82315444 + (TA)n Simple_repeat Simple_repeat 1 41 0 3 1174 513 0 0 0 chr3 77284387 77284444 -82315339 + (GA)n Simple_repeat Simple_repeat 2 58 0 3 1174 1265 96 59 5 chr3 77284511 77284731 -82315052 + L1_Mus3 LINE L1 6402 6633 -5 3 1174 197 378 20 30 chr3 77284861 77284962 -82314821 - L2 LINE L2 -2646 773 674 4 1174 318 328 45 22 chr3 77285058 77285192 -82314591 - MER5B DNA MER1_type -6 172 36 4 1174 183 42 0 0 chr3 77286283 77286307 -82313476 + (TG)n Simple_repeat Simple_repeat 1 24 0 4 1174 702 0 0 0 chr3 77286307 77286384 -82313399 + (GA)n Simple_repeat Simple_repeat 1 78 0 4 1174 367 206 29 58 chr3 77286392 77286531 -82313252 + Lx9 LINE L1 7510 7644 0 4 1174 8698 112 28 11 chr3 77287642 77289605 -82310178 - Lx3_Mus LINE L1 -8 7001 5017 4 1174 447 250 27 15 chr3 77289712 77289863 -82309920 - L1MA4A LINE L1 -364 5936 5753 4 1174 2561 172 143 65 chr3 77290164 77290804 -82308979 - RMER6C LTR ERVK 0 690 1 4 1174 25 0 0 0 chr3 77291197 77291222 -82308561 + AT_rich Low_complexity Low_complexity 1 25 0 4 1174 26 30 0 0 chr3 77291794 77291827 -82307956 + AT_rich Low_complexity Low_complexity 1 33 0 4 1174 206 98 49 0 chr3 77292393 77292434 -82307349 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 4 1174 22 35 0 0 chr3 77292679 77292708 -82307075 + AT_rich Low_complexity Low_complexity 1 29 0 4 1174 27 0 0 0 chr3 77292782 77292809 -82306974 + AT_rich Low_complexity Low_complexity 1 27 0 4 1174 1764 208 122 99 chr3 77293022 77293726 -82306057 - RMER6D LTR ERVK 0 720 1 4 1174 21 0 0 0 chr3 77294793 77294814 -82304969 + AT_rich Low_complexity Low_complexity 1 21 0 4 1174 324 221 29 0 chr3 77295119 77295223 -82304560 - Tigger7 DNA MER2_type -115 2376 2270 4 1174 26 64 0 0 chr3 77295740 77295787 -82303996 + AT_rich Low_complexity Low_complexity 1 47 0 4 1174 367 366 45 23 chr3 77295789 77295965 -82303818 - MT2A LTR ERVL -75 458 279 4 1174 276 325 83 0 chr3 77296091 77296211 -82303572 - MTEb LTR MaLR -244 135 6 4 1174 839 263 131 27 chr3 77296393 77296711 -82303072 - MTD LTR MaLR -1 420 71 4 1174 623 175 127 40 chr3 77296711 77296884 -82302899 + B2_Mm2 SINE B2 2 189 -6 4 1174 683 24 12 0 chr3 77296887 77296972 -82302811 + (TAGA)n Simple_repeat Simple_repeat 1 86 0 4 1174 700 301 132 47 chr3 77296972 77297036 -82302747 - MTD LTR MaLR -351 70 4 4 1174 23 0 0 0 chr3 77297244 77297267 -82302516 + AT_rich Low_complexity Low_complexity 1 23 0 4 1174 2779 198 119 0 chr3 77298189 77298795 -82300988 - RLTR33 LTR ERVK 0 678 1 4 1174 426 20 0 0 chr3 77299077 77299128 -82300655 + (CAAAA)n Simple_repeat Simple_repeat 2 52 0 4 1174 1052 103 14 0 chr3 77299526 77299671 -82300112 + B1_Mus2 SINE Alu 1 147 0 4 1174 23 0 0 0 chr3 77300021 77300044 -82299739 + AT_rich Low_complexity Low_complexity 1 23 0 4 1174 253 321 84 15 chr3 77300449 77300751 -82299032 + L1M5 LINE L1 5118 5439 -734 4 1174 340 183 28 0 chr3 77303258 77303329 -82296454 - MERVL_2A-int LTR ERVL -5654 107 35 4 1174 441 0 0 0 chr3 77303449 77303498 -82296285 + (CA)n Simple_repeat Simple_repeat 2 50 0 4 1174 195 100 0 0 chr3 77303501 77303531 -82296252 + (GGGAGA)n Simple_repeat Simple_repeat 6 35 0 4 1174 1463 234 114 83 chr3 77303544 77303992 -82295791 - MT2A LTR ERVL -71 462 1 4 1174 9520 75 0 3 chr3 77305038 77306328 -82293455 - L1Md_F2 LINE L1 -1306 4577 3292 4 1174 7089 91 1 19 chr3 77306321 77307340 -82292443 + L1Md_F2 LINE L1 4586 5586 -297 4 1174 7494 71 5 5 chr3 77307340 77308326 -82291457 + L1Md_F2 LINE L1 5587 6572 -10 4 1174 214 179 0 0 chr3 77308426 77308465 -82291318 + CT-rich Low_complexity Low_complexity 2 40 0 4 1174 414 57 0 0 chr3 77308832 77308885 -82290898 + (TATG)n Simple_repeat Simple_repeat 3 55 0 4 1174 186 343 49 0 chr3 77309588 77309690 -82290093 - L2 LINE L2 -1887 1532 1426 4 1174 998 150 47 21 chr3 77310255 77310446 -82289337 + ORR1B1 LTR MaLR 47 242 -152 4 1174 781 197 5 18 chr3 77310440 77310596 -82289187 - MT2B LTR ERVL -387 146 1 4 1174 344 189 0 39 chr3 77310634 77310711 -82289072 - ORR1B1-int LTR MaLR -1323 640 567 4 1174 406 212 24 0 chr3 77310711 77310796 -82288987 - MERVL_2A-int LTR ERVL -133 5628 5542 4 1174 2659 221 48 0 chr3 77310784 77311326 -82288457 - MERVL_2A-int LTR ERVL -671 5090 4523 4 1174 1199 187 71 8 chr3 77311326 77311579 -82288204 - ORR1B1 LTR MaLR -85 309 41 4 1174 24 0 0 0 chr3 77313434 77313458 -82286325 + AT_rich Low_complexity Low_complexity 1 24 0 4 1174 185 0 40 0 chr3 77314459 77314484 -82285299 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 4 1174 23 0 0 0 chr3 77315683 77315706 -82284077 + AT_rich Low_complexity Low_complexity 1 23 0 4 1174 1249 201 0 0 chr3 77316291 77316554 -82283229 - Lx2A1 LINE L1 -1 7007 6745 4 1174 691 356 108 61 chr3 77316800 77317460 -82282323 - MER76 LTR ERVL 0 691 1 4 1174 378 0 0 0 chr3 77317702 77317744 -82282039 + (TA)n Simple_repeat Simple_repeat 2 43 0 4 1174 289 209 35 0 chr3 77318119 77318205 -82281578 + (TATAA)n Simple_repeat Simple_repeat 4 92 0 4 1174 309 276 33 49 chr3 77318752 77318874 -82280909 + Lx8 LINE L1 6172 6291 -1182 4 1174 1184 324 27 65 chr3 77319329 77319805 -82279978 + MT2A LTR ERVL 1 458 -75 4 1174 262 148 18 18 chr3 77320076 77320131 -82279652 + Lx6 LINE L1 6110 6164 -1296 4 1174 1895 300 99 82 chr3 77320131 77321388 -82278395 + RMER12 LTR ERVK 1 1278 -44 4 1174 268 256 35 11 chr3 77321630 77321717 -82278066 + L1MEd LINE L1 1157 1245 -4874 4 1174 1260 288 45 0 chr3 77321733 77322066 -82277717 + Lx6 LINE L1 6291 6638 -822 4 1174 858 353 82 49 chr3 77322393 77323272 -82276511 + L1M4c LINE L1 972 1879 -4505 4 1174 22 0 0 0 chr3 77323569 77323591 -82276192 + AT_rich Low_complexity Low_complexity 1 22 0 4 1174 419 117 0 0 chr3 77323741 77323801 -82275982 - Lx LINE L1 -1364 4519 4460 4 1174 7176 145 14 13 chr3 77323793 77325758 -82274025 + Lx LINE L1 4480 6444 -210 4 1174 452 274 23 30 chr3 77325752 77325884 -82273899 - Lx8 LINE L1 -959 6514 6384 4 1174 2092 23 43 0 chr3 77325907 77326165 -82273618 + L1Md_F3 LINE L1 6316 6584 0 4 1174 535 256 8 0 chr3 77326268 77326375 -82273408 + ORR1C2 LTR MaLR 1 108 -266 4 1174 2235 192 36 25 chr3 77326375 77326428 -82273355 + RMER6B LTR ERVK 2 51 -410 4 1174 192 77 0 0 chr3 77326428 77326454 -82273329 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 4 1174 2235 192 36 25 chr3 77326454 77326844 -82272939 + RMER6B LTR ERVK 52 449 -12 4 1174 816 80 0 0 chr3 77326901 77327013 -82272770 + B1_Mus1 SINE Alu 37 148 0 4 1174 537 110 0 0 chr3 77327015 77327115 -82272668 + (CAAAA)n Simple_repeat Simple_repeat 1 100 0 4 1174 291 90 75 0 chr3 77327132 77327199 -82272584 + (TCTCTG)n Simple_repeat Simple_repeat 2 73 0 4 1174 948 194 66 10 chr3 77327256 77327454 -82272329 + ORR1C2 LTR MaLR 176 384 0 4 1174 24 32 0 0 chr3 77327455 77327486 -82272297 + AT_rich Low_complexity Low_complexity 1 31 0 4 1174 22 0 0 0 chr3 77327523 77327545 -82272238 + AT_rich Low_complexity Low_complexity 1 22 0 4 1174 240 59 0 0 chr3 77328462 77328496 -82271287 + (CAA)n Simple_repeat Simple_repeat 3 36 0 4 1174 1540 189 120 20 chr3 77328813 77329170 -82270613 - ORR1B1 LTR MaLR 0 394 2 4 1174 23 33 0 0 chr3 77329294 77329324 -82270459 + AT_rich Low_complexity Low_complexity 1 30 0 4 1174 1585 276 8 5 chr3 77329398 77329766 -82270017 - ORR1D1 LTR MaLR -5 369 1 4 1174 180 179 0 0 chr3 77330416 77330455 -82269328 + (CA)n Simple_repeat Simple_repeat 2 40 0 4 1174 327 25 0 0 chr3 77330843 77330883 -82268900 + (TG)n Simple_repeat Simple_repeat 2 41 0 4 1174 1664 229 25 25 chr3 77331059 77331454 -82268329 + RLTR12A LTR ERVK 170 564 -4 4 1174 264 100 0 0 chr3 77331562 77331602 -82268181 + (A)n Simple_repeat Simple_repeat 1 40 0 4 1174 339 232 1 5 chr3 77332070 77332169 -82267614 + B1_Mur1 SINE Alu 13 109 -40 4 146 879 242 102 17 chr3 77332276 77332570 -82267213 + MYSERV6-int LTR ERVK 6406 6724 -2235 4 1175 4262 135 22 8 chr3 77332575 77333312 -82266471 - MusHAL1 LINE L1 -1457 1255 509 4 1175 6512 141 27 7 chr3 77333305 77335094 -82264689 + L1_Mus4 LINE L1 4804 6629 -7 4 1175 475 312 8 46 chr3 77335652 77335783 -82264000 + B1_Mur3 SINE Alu 18 143 -6 4 1175 973 229 294 30 chr3 77335896 77336384 -82263399 + MYSERV16_I-int LTR ERVK 5 548 -1778 4 1175 1498 42 0 0 chr3 77336384 77336574 -82263209 + L1Md_A LINE L1 6393 6582 0 4 1175 827 229 121 52 chr3 77336574 77336758 -82263025 + MYSERV16_I-int LTR ERVK 549 739 -1587 4 1175 25 0 0 0 chr3 77336758 77336783 -82263000 + AT_rich Low_complexity Low_complexity 1 25 0 4 1175 780 150 0 0 chr3 77336783 77336896 -82262887 - B2_Mm2 SINE B2 -80 115 3 4 1175 3060 262 86 44 chr3 77336932 77338390 -82261393 + MYSERV16_I-int LTR ERVK 858 2303 -23 4 1175 1911 213 47 4 chr3 77338408 77338879 -82260904 - L1_Mur3 LINE L1 -3997 1883 1393 4 1175 1549 199 35 40 chr3 77338869 77339268 -82260515 + L1_Mur3 LINE L1 4839 5235 -645 4 1175 1022 293 79 37 chr3 77339307 77339765 -82260018 + Lx6 LINE L1 5972 6448 -1012 4 1175 228 135 0 0 chr3 77340093 77340130 -82259653 + (CG)n Simple_repeat Simple_repeat 2 38 0 4 1175 369 0 0 0 chr3 77340130 77340171 -82259612 + (CA)n Simple_repeat Simple_repeat 1 41 0 4 1175 2599 268 110 0 chr3 77340373 77341089 -82258694 + Lx6 LINE L1 6470 7264 -196 4 1175 489 152 0 0 chr3 77341406 77341511 -82258272 + (CTTTG)n Simple_repeat Simple_repeat 5 109 0 4 1175 352 193 22 88 chr3 77341511 77341602 -82258181 - B1_Mur2 SINE Alu -1 148 64 4 1175 234 0 0 0 chr3 77342440 77342466 -82257317 + (TA)n Simple_repeat Simple_repeat 2 27 0 4 1175 441 0 0 0 chr3 77342466 77342514 -82257269 + (TG)n Simple_repeat Simple_repeat 2 50 0 4 1175 1213 80 16 5 chr3 77343196 77343384 -82256399 + L1_Mus3 LINE L1 6448 6637 -1 4 1175 821 52 1 0 chr3 77343480 77343597 -82256186 + B1_Mus1 SINE Alu 25 143 -5 4 1175 351 60 0 0 chr3 77343609 77343659 -82256124 + (CAAAC)n Simple_repeat Simple_repeat 1 50 0 4 1175 181 111 13 65 chr3 77343663 77343740 -82256043 + A-rich Low_complexity Low_complexity 4 76 0 4 1175 492 278 184 19 chr3 77343793 77343951 -82255832 + B3 SINE B2 4 187 -29 4 1175 402 21 0 0 chr3 77343957 77344004 -82255779 + (CA)n Simple_repeat Simple_repeat 1 47 0 4 1175 33 0 0 0 chr3 77344004 77344037 -82255746 + AT_rich Low_complexity Low_complexity 1 33 0 4 1175 262 218 78 19 chr3 77344716 77344819 -82254964 - Lx9 LINE L1 -2 7642 7534 4 1175 463 31 31 0 chr3 77344823 77344888 -82254895 + (TA)n Simple_repeat Simple_repeat 2 68 0 5 1175 833 281 172 10 chr3 77344888 77345201 -82254582 - Lx9 LINE L1 -191 7453 7090 4 1175 237 312 0 0 chr3 77345205 77345282 -82254501 + Lx9 LINE L1 6843 6919 -725 5 1175 225 0 0 0 chr3 77345285 77345310 -82254473 + (TTTTA)n Simple_repeat Simple_repeat 5 29 0 5 1175 1458 141 70 4 chr3 77345313 77345583 -82254200 - Lx3A LINE L1 -7 6974 6687 5 1175 326 292 0 0 chr3 77345608 77345704 -82254079 + Lx9 LINE L1 6917 7012 -632 5 1175 21 71 0 0 chr3 77345958 77346000 -82253783 + AT_rich Low_complexity Low_complexity 1 42 0 5 1175 1263 101 26 16 chr3 77346955 77347147 -82252636 - B2_Mm2 SINE B2 0 195 2 5 1175 200 260 52 23 chr3 77348181 77348354 -82251429 + (TAGA)n Simple_repeat Simple_repeat 3 180 0 5 1175 36 77 0 0 chr3 77348719 77348797 -82250986 + AT_rich Low_complexity Low_complexity 1 78 0 5 1175 1182 280 149 36 chr3 77349369 77349566 -82250217 + RMER15 LTR ERVL 33 257 -318 5 1175 858 20 0 0 chr3 77349566 77349666 -82250117 + (TTTC)n Simple_repeat Simple_repeat 2 101 0 5 1175 3955 128 14 49 chr3 77349668 77350326 -82249457 - Lx LINE L1 -10 6644 6010 5 1175 1182 280 149 36 chr3 77350326 77350596 -82249187 + RMER15 LTR ERVL 258 549 -26 5 1175 796 228 47 9 chr3 77350952 77351165 -82248618 + Lx9 LINE L1 7377 7597 -47 5 1175 316 326 49 16 chr3 77351316 77351562 -82248221 + L1MA4 LINE L1 5678 5931 -369 5 1175 5745 104 14 7 chr3 77352016 77352868 -82246915 - L1_Mur1 LINE L1 -57 5829 4972 5 1175 1096 138 11 6 chr3 77352881 77353063 -82246720 - B2_Mm2 SINE B2 -11 184 2 5 1175 426 128 0 69 chr3 77353100 77353201 -82246582 - L1Md_F2 LINE L1 0 6582 6489 5 1175 3300 95 16 62 chr3 77353580 77354097 -82245686 + MT2_Mm LTR ERVL 1 493 0 5 1175 3149 53 2 10 chr3 77355527 77355926 -82243857 + MTA_Mm LTR MaLR 1 396 0 5 1175 6850 103 14 69 chr3 77355928 77357088 -82242695 + MTA_Mm-int LTR MaLR 3 1098 0 5 1175 2788 79 15 5 chr3 77357088 77357484 -82242299 + MTA_Mm LTR MaLR 1 400 0 5 1175 291 345 31 100 chr3 77358558 77358787 -82240996 + MLT1D LTR MaLR 81 293 -212 5 1175 603 40 0 0 chr3 77358794 77358868 -82240915 + (GGAA)n Simple_repeat Simple_repeat 3 76 0 5 1175 247 282 0 0 chr3 77358886 77358957 -82240826 + L1Md_F LINE L1 654 724 -5795 5 1175 27087 135 22 8 chr3 77359013 77361117 -82238666 + L1VL4 LINE L1 697 2870 -3013 5 1175 585 0 0 0 chr3 77361117 77361182 -82238601 + (GAAA)n Simple_repeat Simple_repeat 3 67 0 5 1175 27087 130 19 8 chr3 77361182 77364081 -82235702 + L1VL4 LINE L1 2871 5770 -113 5 1175 373 285 68 20 chr3 77364263 77364410 -82235373 + MER5A1 DNA MER1_type 12 165 -1 5 1175 23 33 0 0 chr3 77364707 77364737 -82235046 + AT_rich Low_complexity Low_complexity 1 30 0 5 1175 384 22 0 0 chr3 77365185 77365230 -82234553 + (TG)n Simple_repeat Simple_repeat 2 46 0 5 1175 4429 60 2 14 chr3 77365330 77365901 -82233882 + LTRIS2 LTR ERV1 1 564 0 5 1175 206 217 0 0 chr3 77366440 77366486 -82233297 + T-rich Low_complexity Low_complexity 2 47 0 5 1175 3906 179 76 1 chr3 77368204 77368955 -82230828 - Lx2B LINE L1 -5 6995 6189 5 1175 772 222 36 56 chr3 77369495 77369691 -82230092 + URR1B DNA MER1_type 33 224 -1 5 1175 270 293 37 82 chr3 77370036 77370050 -82229733 + MT2B2 LTR ERVL 151 158 -426 5 1175 740 245 0 7 chr3 77370050 77370198 -82229585 + B1_Mus2 SINE Alu 1 147 0 5 1175 207 0 0 0 chr3 77370198 77370221 -82229562 + (CAAAAA)n Simple_repeat Simple_repeat 6 28 0 5 1175 22 56 0 0 chr3 77370266 77370302 -82229481 + AT_rich Low_complexity Low_complexity 1 36 0 5 1175 225 159 0 0 chr3 77370554 77370598 -82229185 + (CA)n Simple_repeat Simple_repeat 2 45 0 5 1175 682 307 5 0 chr3 77371151 77371363 -82228420 - B3 SINE B2 0 216 4 5 1175 6141 147 34 16 chr3 77371536 77372577 -82227206 - Lx LINE L1 -9 6645 5587 5 1175 1434 82 5 0 chr3 77372588 77372795 -82226988 - MusHAL1 LINE L1 -1317 1395 1188 5 1175 315 242 0 0 chr3 77372786 77372852 -82226931 - L1VL4 LINE L1 -6152 150 85 5 1175 1781 324 31 25 chr3 77374268 77375042 -82224741 - Lx9 LINE L1 -173 7471 6693 5 1175 27 29 0 0 chr3 77375568 77375602 -82224181 + AT_rich Low_complexity Low_complexity 1 34 0 5 1175 739 199 19 126 chr3 77376583 77376900 -82222883 - Lx9 LINE L1 -2 7642 7360 5 1175 3634 26 0 83 chr3 77376904 77377100 -82222683 + L1Md_F2 LINE L1 5132 5295 -588 5 1175 8423 33 0 0 chr3 77377100 77378095 -82221688 + L1Md_T LINE L1 5587 6581 -1 5 1175 3634 26 0 83 chr3 77378095 77378394 -82221389 + L1Md_F2 LINE L1 5296 5586 -297 5 1175 7630 58 19 0 chr3 77378394 77379368 -82220415 + L1Md_F2 LINE L1 5587 6578 -4 5 1175 249 108 0 0 chr3 77379368 77379405 -82220378 + (TA)n Simple_repeat Simple_repeat 1 37 0 5 1175 1136 230 70 4 chr3 77379407 77379665 -82220118 - Lx9 LINE L1 -280 7364 7090 5 1175 307 313 0 84 chr3 77379815 77379958 -82219825 + B3 SINE B2 84 214 -2 5 1175 248 0 31 0 chr3 77380012 77380044 -82219739 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 5 1175 1077 88 0 0 chr3 77380044 77380180 -82219603 - B1_Mm SINE Alu -10 137 2 5 1175 25 65 0 0 chr3 77380282 77380328 -82219455 + AT_rich Low_complexity Low_complexity 1 46 0 5 1175 663 332 10 0 chr3 77380353 77380546 -82219237 + ID_B1 SINE B4 8 202 -22 5 1175 477 0 0 0 chr3 77380546 77380599 -82219184 + (TC)n Simple_repeat Simple_repeat 2 54 0 5 1175 209 132 26 0 chr3 77380600 77380638 -82219145 + (CATA)n Simple_repeat Simple_repeat 1 39 0 5 1175 213 39 0 0 chr3 77381696 77381722 -82218061 + (ATG)n Simple_repeat Simple_repeat 2 27 0 5 1175 22 0 0 0 chr3 77381726 77381748 -82218035 + AT_rich Low_complexity Low_complexity 1 22 0 5 1175 380 246 17 26 chr3 77381851 77381968 -82217815 - Lx5 LINE L1 -3 7047 6932 5 1175 4487 83 0 31 chr3 77382028 77382672 -82217111 - L1Md_F2 LINE L1 0 6582 5959 5 1175 27 0 0 0 chr3 77382679 77382706 -82217077 + AT_rich Low_complexity Low_complexity 1 27 0 5 1175 26 30 0 0 chr3 77382750 77382783 -82217000 + AT_rich Low_complexity Low_complexity 1 33 0 5 1175 351 46 45 15 chr3 77382827 77382893 -82216890 + (CAAAA)n Simple_repeat Simple_repeat 2 69 0 5 1175 228 310 110 42 chr3 77383163 77383281 -82216502 + PB1 SINE Alu 2 127 0 5 1175 201 129 0 0 chr3 77383671 77383702 -82216081 + (CA)n Simple_repeat Simple_repeat 2 32 0 5 1175 24 0 0 0 chr3 77383764 77383788 -82215995 + AT_rich Low_complexity Low_complexity 1 24 0 5 1175 445 305 0 9 chr3 77384202 77384308 -82215475 + PB1D10 SINE Alu 13 117 0 5 1175 1182 276 65 3 chr3 77384495 77384819 -82214964 - RMER15 LTR ERVL 0 575 232 5 1175 226 192 115 0 chr3 77385304 77385356 -82214427 + RMER10A LTR ERVL 321 378 -64 5 1175 1828 195 38 8 chr3 77385371 77385743 -82214040 - ORR1C2 LTR MaLR 0 384 2 5 1175 26 0 0 0 chr3 77386182 77386208 -82213575 + GC_rich Low_complexity Low_complexity 1 26 0 5 1175 245 29 29 0 chr3 77386296 77386330 -82213453 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 5 1175 231 88 0 0 chr3 77386913 77386947 -82212836 + (A)n Simple_repeat Simple_repeat 1 34 0 5 1175 514 276 100 87 chr3 77387410 77387640 -82212143 + MTD LTR MaLR 152 384 -35 5 1175 359 145 0 12 chr3 77387712 77387796 -82211987 + GA-rich Low_complexity Low_complexity 2 84 0 5 1175 577 236 108 57 chr3 77387796 77388114 -82211669 - MT2A LTR ERVL -61 540 1 5 1175 2820 79 6 1 chr3 77388126 77388590 -82211193 - L1_Mus2 LINE L1 -623 5943 5478 5 1175 4566 80 11 2 chr3 77388590 77389205 -82210578 + L1_Mus2 LINE L1 5946 6566 0 5 1175 229 150 0 62 chr3 77389298 77389362 -82210421 + GA-rich Low_complexity Low_complexity 3 62 0 5 1175 399 309 110 45 chr3 77389798 77389998 -82209785 + B3 SINE B2 4 216 0 5 1175 383 346 36 29 chr3 77390122 77390259 -82209524 + B4A SINE B4 141 278 -14 5 1175 450 0 0 0 chr3 77390260 77390310 -82209473 + (CA)n Simple_repeat Simple_repeat 1 50 0 5 1175 4434 156 46 6 chr3 77391515 77392217 -82207566 - L1_Mur2 LINE L1 -164 5713 4983 5 1175 305 24 24 0 chr3 77392217 77392259 -82207524 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 5 1175 4434 156 46 6 chr3 77392259 77392386 -82207397 - L1_Mur2 LINE L1 -895 4982 4852 5 1175 1305 141 110 0 chr3 77392403 77392658 -82207125 - Lx2 LINE L1 -3 6994 6712 5 1175 252 229 157 0 chr3 77393061 77393131 -82206652 - B1_Mur1 SINE Alu 0 149 69 5 1175 351 0 36 36 chr3 77393163 77393219 -82206564 + (TTG)n Simple_repeat Simple_repeat 2 57 0 5 1175 949 73 0 0 chr3 77393219 77393343 -82206440 - B1_Mus1 SINE Alu -23 125 2 5 1175 452 185 0 131 chr3 77393231 77393368 -82206415 - MT2B LTR ERVL -337 264 146 5 1175 2844 43 40 0 chr3 77393408 77393782 -82206001 + L1Md_F2 LINE L1 6200 6582 0 5 1175 26 30 0 0 chr3 77394552 77394585 -82205198 + AT_rich Low_complexity Low_complexity 1 33 0 5 1175 608 83 0 12 chr3 77394967 77395052 -82204731 - BC1_Mm scRNA scRNA -68 84 1 5 1175 235 327 10 0 chr3 77396413 77396514 -82203269 - BC1_Mm scRNA scRNA -37 115 14 5 1175 426 293 81 27 chr3 77396995 77397181 -82202602 - Lx8 LINE L1 -1125 6348 6153 5 1175 1525 324 83 26 chr3 77397203 77398037 -82201746 + Lx8 LINE L1 6584 7464 -9 5 1175 335 294 14 14 chr3 77398769 77398907 -82200876 - Lx7 LINE L1 0 7696 7559 5 1175 1877 268 46 23 chr3 77398946 77399069 -82200714 - Lx7 LINE L1 -247 7449 7330 5 1175 297 0 0 0 chr3 77399069 77399102 -82200681 + (TAAA)n Simple_repeat Simple_repeat 2 34 0 5 1175 1877 268 46 23 chr3 77399102 77399548 -82200235 - Lx7 LINE L1 -367 7329 6868 5 1175 398 20 20 0 chr3 77399553 77399604 -82200179 + (TTTTG)n Simple_repeat Simple_repeat 2 53 0 5 1175 985 104 0 0 chr3 77399605 77399740 -82200043 - B1_Mm SINE Alu -12 135 1 5 1175 2153 78 59 23 chr3 77401296 77401650 -82198133 + IAPLTR1_Mm LTR ERVK 1 367 0 5 1175 55074 28 6 5 chr3 77401660 77408101 -82191682 + IAPEz-int LTR ERVK 34 6481 0 5 1175 8303 84 21 2 chr3 77408267 77410085 -82189698 - L1Md_F2 LINE L1 -12 6570 4730 5 1175 1399 260 66 20 chr3 77410326 77410596 -82189187 - MTD LTR MaLR -9 410 126 5 1175 1085 69 0 27 chr3 77410596 77410745 -82189038 + B1_Mus1 SINE Alu 2 146 -2 5 1175 1399 260 66 20 chr3 77410745 77410866 -82188917 - MTD LTR MaLR -294 125 3 5 1175 2943 258 23 10 chr3 77412538 77413269 -82186514 - Lx7 LINE L1 -476 7220 6480 5 1175 254 293 90 75 chr3 77413263 77413706 -82186077 + Lx7 LINE L1 7247 7696 0 5 1175 4486 104 19 3 chr3 77414774 77415440 -82184343 + Lx3_Mus LINE L1 6325 7001 -8 6 1175 314 206 13 52 chr3 77416161 77416238 -82183545 + MT2A LTR ERVL 5 78 -523 6 1175 476 277 43 129 chr3 77416225 77416408 -82183375 + MT2A LTR ERVL 322 491 -42 6 1175 306 0 0 0 chr3 77416408 77416442 -82183341 + (CA)n Simple_repeat Simple_repeat 2 35 0 6 1175 476 277 43 129 chr3 77416442 77416490 -82183293 + MT2A LTR ERVL 492 533 0 6 1175 302 350 10 20 chr3 77416698 77416800 -82182983 + MT2A LTR ERVL 279 379 -154 6 1175 1458 126 2 220 chr3 77419030 77419466 -82180317 + L1_Mus3 LINE L1 4957 5297 -586 6 1175 657 125 0 9 chr3 77419470 77419583 -82180200 + MusHAL1 LINE L1 2454 2565 -147 6 1175 1170 75 0 0 chr3 77419628 77419775 -82180008 + B1_Mus2 SINE Alu 1 147 0 6 1175 1109 89 0 0 chr3 77419960 77420106 -82179677 - B1_Mus2 SINE Alu -1 146 1 6 1175 7293 111 10 1 chr3 77420141 77421475 -82178308 + L1_Mus3 LINE L1 5287 6633 -5 6 1175 342 292 120 34 chr3 77422924 77423190 -82176593 - L1M2 LINE L1 -513 5787 5499 6 1175 227 246 113 83 chr3 77423165 77423298 -82176485 - L1_Mm LINE L1 -389 5494 5358 6 1175 1320 98 11 0 chr3 77423566 77423750 -82176033 + B2_Mm1t SINE B2 1 186 -7 6 1175 317 43 21 0 chr3 77426050 77426097 -82173686 + (TTTG)n Simple_repeat Simple_repeat 2 49 0 6 1175 1236 49 0 6 chr3 77426735 77426899 -82172884 + L1_Mus2 LINE L1 6404 6566 0 6 1175 444 301 0 24 chr3 77427252 77427422 -82172361 + (CA)n Simple_repeat Simple_repeat 1 166 0 6 1175 21 36 0 0 chr3 77427712 77427740 -82172043 + AT_rich Low_complexity Low_complexity 1 28 0 6 1175 414 0 0 0 chr3 77428668 77428714 -82171069 + (TG)n Simple_repeat Simple_repeat 2 47 0 6 1175 450 0 0 0 chr3 77428765 77428815 -82170968 + (CA)n Simple_repeat Simple_repeat 1 50 0 6 1175 522 0 0 0 chr3 77430512 77430570 -82169213 + (GA)n Simple_repeat Simple_repeat 1 58 0 6 1175 333 123 15 18 chr3 77431013 77431081 -82168702 - L1_Mus1 LINE L1 -142 6440 6364 6 1175 665 84 47 0 chr3 77431081 77431188 -82168595 + L1_Mus1 LINE L1 6456 6567 0 6 1175 450 0 0 0 chr3 77431853 77431903 -82167880 + (CA)n Simple_repeat Simple_repeat 1 50 0 6 1175 747 149 0 0 chr3 77431903 77432071 -82167712 + (TA)n Simple_repeat Simple_repeat 1 168 0 6 1175 1574 136 4 0 chr3 77432459 77432710 -82167073 - Lx LINE L1 -701 5953 5702 6 1175 30556 79 4 50 chr3 77432708 77434783 -82165000 - L1Md_F2 LINE L1 0 6582 4518 6 1175 495 30 15 0 chr3 77434783 77434850 -82164933 - IAPEY2_LTR LTR ERVK 0 357 290 6 1175 2064 29 0 0 chr3 77434850 77435094 -82164689 - L1Md_T LINE L1 0 6582 6339 6 1175 30556 85 6 89 chr3 77435094 77435160 -82164623 - L1Md_F2 LINE L1 -1366 4517 4454 6 1175 1511 110 175 11 chr3 77435160 77435441 -82164342 - IAPEY2_LTR LTR ERVK -57 300 1 6 1175 30556 85 6 89 chr3 77435441 77438759 -82161024 - L1Md_F2 LINE L1 -1366 4453 1203 6 1175 6659 73 0 3 chr3 77438725 77439580 -82160203 - L1Md_F LINE L1 -5380 1139 288 6 1175 284 79 0 0 chr3 77439575 77439613 -82160170 - L1_Mus4 LINE L1 -915 5721 5684 6 1175 3344 117 36 32 chr3 77440460 77440991 -82158792 - Lx3A LINE L1 -8 6973 6441 6 1175 1484 153 0 46 chr3 77441117 77441397 -82158386 - Lx3A LINE L1 -932 6049 5783 6 1175 7381 68 5 3 chr3 77441634 77442894 -82156889 - L1Md_F2 LINE L1 -12 6570 5307 6 1175 2495 91 0 0 chr3 77442889 77443241 -82156542 + L1Md_F2 LINE L1 4969 5320 -563 6 1175 26410 110 25 46 chr3 77443233 77447788 -82151995 - Lx3A LINE L1 -84 5802 1344 6 1175 249 204 62 83 chr3 77447786 77447882 -82151901 - Lx3A LINE L1 -6824 160 67 6 1175 207 80 59 20 chr3 77448182 77448233 -82151550 + (TTTG)n Simple_repeat Simple_repeat 2 54 0 6 1175 447 161 9 26 chr3 77448434 77448549 -82151234 + (TCTCTG)n Simple_repeat Simple_repeat 2 114 0 6 1175 25 65 0 0 chr3 77448550 77448596 -82151187 + AT_rich Low_complexity Low_complexity 1 46 0 6 1175 3739 289 45 12 chr3 77448596 77449652 -82150131 - Lx6 LINE L1 -49 7411 6321 6 1175 329 239 0 0 chr3 77449652 77449723 -82150060 + MTC-int LTR MaLR 373 443 -815 6 1175 362 187 0 0 chr3 77449723 77449798 -82149985 + L1_Mus3 LINE L1 6547 6621 -17 6 1175 189 0 0 0 chr3 77449799 77449820 -82149963 + (TAA)n Simple_repeat Simple_repeat 1 21 0 6 1175 2296 233 151 19 chr3 77450085 77450806 -82148977 + MTC-int LTR MaLR 443 1258 0 6 1175 1740 234 42 17 chr3 77450806 77451166 -82148617 + MTC LTR MaLR 1 369 -52 6 1175 337 326 56 28 chr3 77451197 77451339 -82148444 + B3A SINE B2 6 151 -47 6 1175 264 59 0 0 chr3 77451352 77451386 -82148397 + (CA)n Simple_repeat Simple_repeat 2 35 0 6 1175 336 282 19 28 chr3 77451419 77451525 -82148258 + B3 SINE B2 39 143 -73 6 1175 240 35 0 0 chr3 77451847 77451876 -82147907 + (CA)n Simple_repeat Simple_repeat 2 30 0 6 1175 620 48 12 0 chr3 77451880 77451964 -82147819 + (GAGAA)n Simple_repeat Simple_repeat 4 88 0 6 1175 1053 131 0 0 chr3 77452837 77452990 -82146793 + L1_Mur2 LINE L1 5053 5205 -672 6 1175 231 182 127 0 chr3 77452984 77453039 -82146744 + Lx2B LINE L1 6430 6491 -509 6 1175 231 214 75 53 chr3 77453050 77453144 -82146639 + Lx2B LINE L1 6902 6997 -3 6 1175 21 0 0 0 chr3 77453661 77453682 -82146101 + AT_rich Low_complexity Low_complexity 1 21 0 6 1175 189 0 0 0 chr3 77454151 77454172 -82145611 + (CAAA)n Simple_repeat Simple_repeat 4 24 0 6 1175 1723 324 75 28 chr3 77454271 77455160 -82144623 - Lx8 LINE L1 -286 7187 6257 6 1175 423 292 81 13 chr3 77455309 77455458 -82144325 + RSINE1 SINE B4 3 161 -4 6 1175 378 0 0 0 chr3 77456317 77456359 -82143424 + (CA)n Simple_repeat Simple_repeat 2 43 0 6 1175 1083 280 62 9 chr3 77458449 77458773 -82141010 + Lx7 LINE L1 7070 7410 -286 6 1175 2102 87 14 0 chr3 77458859 77459148 -82140635 - L1_Mus1 LINE L1 -1 6566 6274 6 1175 258 317 18 90 chr3 77459256 77459367 -82140416 + MT2B LTR ERVL 155 257 -344 6 1175 503 266 14 35 chr3 77459270 77459414 -82140369 + B1_Mm SINE Alu 7 147 0 6 1175 22 0 0 0 chr3 77460168 77460190 -82139593 + AT_rich Low_complexity Low_complexity 1 22 0 6 1175 398 331 18 116 chr3 77460327 77460491 -82139292 - RSINE1 SINE B4 0 165 18 6 1175 1291 254 35 106 chr3 77460548 77460945 -82138838 + ORR1D1 LTR MaLR 6 374 0 6 1175 576 354 79 20 chr3 77460945 77461198 -82138585 + B4 SINE B4 21 288 -4 6 1175 222 128 0 0 chr3 77462067 77462106 -82137677 + (TTATA)n Simple_repeat Simple_repeat 4 42 0 6 1175 425 370 68 34 chr3 77462387 77462622 -82137161 - MER47B DNA MER2_type -174 244 2 6 1175 267 369 66 44 chr3 77462824 77463051 -82136732 - MLT1A0 LTR MaLR -60 305 74 6 146 3511 88 2 8 chr3 77463182 77463666 -82136117 + L1Md_F2 LINE L1 6099 6579 -3 6 1176 1238 85 10 36 chr3 77463848 77464044 -82135739 + B2_Mm2 SINE B2 3 193 -2 6 1176 1134 109 5 42 chr3 77464075 77464267 -82135516 - L1_Mm LINE L1 -588 5295 5111 6 1176 4779 87 1 19 chr3 77464276 77464945 -82134838 + L1_Mm LINE L1 4464 5120 -763 6 1176 1853 197 64 52 chr3 77465014 77465453 -82134330 + RLTR41 LTR ERV1 1 444 -2 6 1176 213 175 0 0 chr3 77465831 77465871 -82133912 + A-rich Low_complexity Low_complexity 5 44 0 6 1176 6933 54 2 5 chr3 77466429 77467301 -82132482 - L1Md_F2 LINE L1 0 6582 5713 6 1176 450 0 0 0 chr3 77467413 77467463 -82132320 + (TG)n Simple_repeat Simple_repeat 1 50 0 6 1176 313 193 0 0 chr3 77468294 77468351 -82131432 + L1MCa LINE L1 848 904 -5604 6 1176 204 40 0 0 chr3 77468781 77468806 -82130977 + (CA)n Simple_repeat Simple_repeat 2 26 0 6 1176 207 0 0 0 chr3 77468806 77468828 -82130955 + (GA)n Simple_repeat Simple_repeat 2 24 0 6 1176 754 244 77 20 chr3 77469173 77469420 -82130363 - Lx6 LINE L1 0 7460 7200 6 1176 228 89 53 18 chr3 77469454 77469511 -82130272 + A-rich Low_complexity Low_complexity 2 60 0 6 1176 1167 68 0 0 chr3 77469698 77469846 -82129937 + B1_Mus1 SINE Alu 1 148 0 6 1176 38 0 0 0 chr3 77469846 77469884 -82129899 + AT_rich Low_complexity Low_complexity 1 38 0 6 1176 303 93 0 0 chr3 77470079 77470122 -82129661 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 6 1176 486 313 0 7 chr3 77470442 77470577 -82129206 + RMER1C Other Other 1060 1193 -149 6 1176 260 224 90 0 chr3 77470604 77470671 -82129112 + RMER1C Other Other 1252 1324 -18 6 1176 40454 16 2 7 chr3 77471202 77477489 -82122294 - L1Md_A LINE L1 0 6582 376 6 1176 285 368 73 7 chr3 77477983 77478120 -82121663 - MLT1A0 LTR MaLR -219 146 1 6 1176 386 313 47 24 chr3 77478121 77478291 -82121492 + MIR SINE MIR 70 243 -19 6 1176 22 56 0 0 chr3 77478474 77478510 -82121273 + AT_rich Low_complexity Low_complexity 1 36 0 6 1176 785 297 55 48 chr3 77478513 77479078 -82120705 + L1MC LINE L1 2298 2866 -3280 6 1176 1747 228 58 5 chr3 77479590 77479987 -82119796 - Lx4B LINE L1 -4 7054 6637 6 1176 294 70 0 23 chr3 77479993 77480037 -82119746 - MTB LTR MaLR -149 251 209 6 1176 1025 119 0 0 chr3 77480022 77480165 -82119618 + ORR1A2 LTR MaLR 258 400 0 6 1176 6109 132 39 11 chr3 77480164 77481453 -82118330 + ORR1A2-int LTR MaLR 2 1963 0 6 1176 2248 75 72 0 chr3 77481453 77481758 -82118025 + ORR1A2 LTR MaLR 1 327 0 6 1176 14365 9 0 0 chr3 77482792 77484419 -82115364 + L1Md_A LINE L1 3960 5586 -297 6 1176 8790 14 0 0 chr3 77484419 77485415 -82114368 + L1Md_A LINE L1 5587 6582 0 6 1176 594 75 0 0 chr3 77485874 77485954 -82113829 + (CATA)n Simple_repeat Simple_repeat 4 83 0 6 1176 28 0 0 0 chr3 77485960 77485988 -82113795 + AT_rich Low_complexity Low_complexity 1 28 0 6 1176 19550 16 0 0 chr3 77486045 77488325 -82111458 - L1_Mm LINE L1 -1097 4786 2508 6 1176 7112 18 0 1 chr3 77488324 77489128 -82110655 + L1_Mm LINE L1 4783 5586 -297 6 1176 8745 17 0 0 chr3 77489128 77490123 -82109660 + L1Md_A LINE L1 5587 6581 -1 6 1176 7112 18 0 1 chr3 77490123 77490139 -82109644 + L1_Mm LINE L1 5587 5602 -281 6 1176 247 295 11 11 chr3 77490656 77490745 -82109038 - L1_Mur2 LINE L1 -213 5664 5576 6 1176 308 35 16 49 chr3 77490781 77490842 -82108941 + (TTTG)n Simple_repeat Simple_repeat 2 60 0 6 1176 411 262 19 32 chr3 77491275 77491290 -82108493 + L1Md_F3 LINE L1 6346 6360 -224 6 1176 2337 137 8 3 chr3 77491290 77491671 -82108112 - L1_Mus3 LINE L1 0 6638 6256 6 1176 1252 101 140 22 chr3 77491671 77491893 -82107890 + Lx LINE L1 6401 6648 -6 6 1176 695 337 41 48 chr3 77491999 77492267 -82107516 - B4 SINE B4 -22 270 5 6 1176 23 33 0 0 chr3 77492395 77492425 -82107358 + AT_rich Low_complexity Low_complexity 1 30 0 6 1176 345 191 0 28 chr3 77492810 77492918 -82106865 + (TTA)n Simple_repeat Simple_repeat 3 107 0 6 1176 2042 112 0 62 chr3 77492999 77493323 -82106460 - ORR1A2 LTR MaLR 0 327 24 6 1176 227 203 16 0 chr3 77493647 77493711 -82106072 + (CA)n Simple_repeat Simple_repeat 2 66 0 6 1176 687 279 39 6 chr3 77494733 77494913 -82104870 + B3 SINE B2 31 216 0 6 1176 1468 196 42 45 chr3 77496313 77496671 -82103112 - Lx4B LINE L1 -5 7053 6697 7 1176 1045 313 43 34 chr3 77497194 77497591 -82102192 - MTE2a LTR MaLR 0 421 12 7 1176 225 65 0 0 chr3 77498189 77498220 -82101563 + (TG)n Simple_repeat Simple_repeat 2 32 0 7 1176 229 310 88 0 chr3 77498383 77498496 -82101287 - Tigger2b DNA MER2_type -203 523 401 7 1176 803 345 40 17 chr3 77498546 77498897 -82100886 - ORR1E LTR MaLR 0 359 1 7 1176 357 228 140 7 chr3 77498977 77499127 -82100656 - Tigger2b DNA MER2_type -446 280 111 7 1176 378 0 0 0 chr3 77499138 77499180 -82100603 + (TG)n Simple_repeat Simple_repeat 1 42 0 7 1176 1173 206 152 111 chr3 77499513 77500000 -82099783 + RMER6C LTR ERVK 9 515 -175 7 1176 976 183 0 0 chr3 77500000 77500175 -82099608 + RMER6C LTR ERVK 516 690 0 1 1176 273 306 0 0 chr3 77500479 77500564 -82099219 + Lx8 LINE L1 6379 6463 -1010 2 1176 1990 127 25 3 chr3 77500682 77500997 -82098786 + Lx2 LINE L1 5831 6152 -845 3 1176 1970 136 33 6 chr3 77500997 77501329 -82098454 + Lx2 LINE L1 6657 6997 0 3 1176 362 363 64 0 chr3 77501368 77501539 -82098244 + Lx8 LINE L1 6919 7100 -373 2 1176 3028 150 3 19 chr3 77501548 77502126 -82097657 + MusHAL1 LINE L1 842 1410 -1302 4 1176 21393 118 9 3 chr3 77502127 77503107 -82096676 - L1_Mus3 LINE L1 -372 6266 5279 5 1176 2902 3 0 0 chr3 77503107 77503431 -82096352 - L1Md_A LINE L1 -1 6581 6258 6 1176 21393 152 14 10 chr3 77503431 77506640 -82093143 - L1_Mus3 LINE L1 -605 5278 2057 5 1176 4292 108 16 13 chr3 77506623 77507494 -82092289 - L1VL2 LINE L1 -2428 1187 314 7 1176 231 103 0 0 chr3 77507528 77507567 -82092216 + (TTG)n Simple_repeat Simple_repeat 1 39 0 8 1176 348 24 0 0 chr3 77507752 77507793 -82091990 + (CA)n Simple_repeat Simple_repeat 2 42 0 9 1176 509 147 0 33 chr3 77507793 77507907 -82091876 + (TATATG)n Simple_repeat Simple_repeat 2 111 0 1 1176 2628 229 26 10 chr3 77507907 77508659 -82091124 - Lx4B LINE L1 -22 6978 6179 1 1176 35153 49 1 5 chr3 77509090 77514572 -82085211 + L1Md_T LINE L1 33 5588 -298 1 1176 8461 33 0 0 chr3 77514573 77515569 -82084214 + L1Md_T LINE L1 5590 6585 0 1 1176 349 216 52 16 chr3 77515655 77515969 -82083814 + (TA)n Simple_repeat Simple_repeat 1 325 0 1 1176 643 267 48 48 chr3 77516249 77516580 -82083203 - Lx9 LINE L1 -1 7643 7313 1 1176 718 130 0 9 chr3 77516615 77516724 -82083059 + ORR1A4 LTR MaLR 222 329 0 1 1176 925 225 134 35 chr3 77516724 77516994 -82082789 + MTEb LTR MaLR 69 367 -12 1 1176 691 309 58 46 chr3 77517149 77517583 -82082200 + L1M2 LINE L1 4578 5016 -1127 1 1176 245 119 0 67 chr3 77517688 77517733 -82082050 + MTEb LTR MaLR 333 374 -5 1 1176 278 305 48 70 chr3 77517944 77518131 -82081652 - L2 LINE L2 -1212 2207 2025 1 1176 23 0 0 0 chr3 77518291 77518314 -82081469 + AT_rich Low_complexity Low_complexity 1 23 0 1 1176 438 346 97 19 chr3 77518321 77518630 -82081153 - Lx8 LINE L1 -9 7464 7132 2 1176 8319 142 40 2 chr3 77518640 77520098 -82079685 - Lx2 LINE L1 -1 6996 5463 2 1176 516 291 21 0 chr3 77520317 77520458 -82079325 + B3 SINE B2 70 213 -3 2 1176 24 0 0 0 chr3 77520460 77520484 -82079299 + AT_rich Low_complexity Low_complexity 1 24 0 2 1176 200 200 18 0 chr3 77520524 77520579 -82079204 + (TA)n Simple_repeat Simple_repeat 2 57 0 2 1176 2336 146 46 10 chr3 77520777 77521193 -82078590 + Lx LINE L1 6218 6648 -6 2 1176 23 54 0 0 chr3 77521257 77521294 -82078489 + AT_rich Low_complexity Low_complexity 1 37 0 2 1176 237 291 38 0 chr3 77521474 77521553 -82078230 + GA-rich Low_complexity Low_complexity 3 84 0 2 1176 227 321 12 0 chr3 77522137 77522218 -82077565 - L1ME1 LINE L1 -177 6002 5921 2 1176 242 286 0 49 chr3 77522241 77522322 -82077461 + L1MD1 LINE L1 6086 6162 -80 2 1176 201 257 0 13 chr3 77522426 77522501 -82077282 + (TATAA)n Simple_repeat Simple_repeat 4 77 0 3 1176 919 271 14 0 chr3 77522504 77522711 -82077072 + B3 SINE B2 1 210 -6 3 1176 668 313 71 83 chr3 77522860 77523268 -82076515 - MT2A LTR ERVL -120 413 11 3 1176 229 276 30 30 chr3 77523268 77523369 -82076414 - L1MC LINE L1 -607 5726 5626 3 1176 342 0 0 0 chr3 77523402 77523440 -82076343 + (CA)n Simple_repeat Simple_repeat 1 38 0 3 1176 532 180 13 26 chr3 77523543 77523697 -82076086 + (TATATG)n Simple_repeat Simple_repeat 5 156 0 3 1176 192 40 0 0 chr3 77523724 77523749 -82076034 + (CAAAAA)n Simple_repeat Simple_repeat 5 29 0 3 1176 534 328 97 36 chr3 77523804 77524360 -82075423 + L1MC1 LINE L1 5743 6332 -1 3 1176 30 89 0 0 chr3 77525773 77525852 -82073931 + AT_rich Low_complexity Low_complexity 1 79 0 3 1176 1314 244 68 10 chr3 77525946 77526331 -82073452 + Lx9 LINE L1 7204 7610 -34 3 1176 2751 199 70 54 chr3 77526355 77527041 -82072742 - RLTR40 LTR ERVK -120 697 1 4 1176 23 54 0 0 chr3 77527284 77527321 -82072462 + AT_rich Low_complexity Low_complexity 1 37 0 4 1176 702 282 142 48 chr3 77527870 77528734 -82071049 + L1M2 LINE L1 4322 5267 -876 4 1176 44 35 0 0 chr3 77529117 77529175 -82070608 + AT_rich Low_complexity Low_complexity 1 58 0 4 1176 483 63 0 0 chr3 77529374 77529437 -82070346 + (CA)n Simple_repeat Simple_repeat 1 63 0 4 1176 210 24 70 23 chr3 77529507 77529550 -82070233 + (CAAA)n Simple_repeat Simple_repeat 3 47 0 4 1176 1168 94 0 16 chr3 77529644 77529827 -82069956 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 4 1176 2163 303 17 20 chr3 77529833 77530546 -82069237 - Lx6 LINE L1 -177 7283 6573 4 1176 1909 54 0 8 chr3 77530596 77530863 -82068920 + L1Md_F2 LINE L1 6321 6582 0 4 1176 562 337 12 6 chr3 77530989 77531162 -82068621 + B3A SINE B2 6 179 -19 4 1176 13059 155 23 39 chr3 77531255 77532282 -82067501 + L1_Mur2 LINE L1 680 1699 -4178 5 1176 197 33 33 0 chr3 77532282 77532312 -82067471 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 5 1176 13059 139 32 44 chr3 77532312 77534441 -82065342 + L1_Mur2 LINE L1 1700 3790 -2087 5 1176 3385 128 8 0 chr3 77534445 77534961 -82064822 + Lx LINE L1 5911 6430 -224 5 1176 6931 104 31 5 chr3 77534957 77535630 -82064153 - Lx3_Mus LINE L1 -399 6610 5907 5 1176 266 0 29 0 chr3 77535630 77535664 -82064119 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 5 1176 6931 83 1 11 chr3 77535664 77536141 -82063642 - Lx3_Mus LINE L1 -1103 5906 5437 5 1176 675 202 31 31 chr3 77536121 77536315 -82063468 - Lx3_Mus LINE L1 -2710 3176 2983 5 1176 1843 146 12 3 chr3 77536309 77536633 -82063150 + L1_Mur2 LINE L1 4211 4537 -1340 5 1176 664 284 29 22 chr3 77536631 77536926 -82062857 + Lx2B LINE L1 6655 7047 -11 5 1176 459 35 0 0 chr3 77536926 77536983 -82062800 + (CA)n Simple_repeat Simple_repeat 2 58 0 5 1176 21 89 0 0 chr3 77537612 77537668 -82062115 + AT_rich Low_complexity Low_complexity 1 56 0 5 1176 547 348 0 47 chr3 77537794 77537984 -82061799 - B3A SINE B2 -16 182 2 5 1176 539 326 52 24 chr3 77538826 77539115 -82060668 + Lx7 LINE L1 6564 6860 -836 5 1176 687 237 106 11 chr3 77539285 77539464 -82060319 - MTD LTR MaLR 0 419 224 6 1176 335 241 0 79 chr3 77539518 77539644 -82060139 + RLTR22_Mur LTR ERVK 998 1113 -735 6 1176 522 114 0 0 chr3 77540283 77540362 -82059421 + (TA)n Simple_repeat Simple_repeat 2 80 0 6 1176 303 161 0 0 chr3 77541198 77541254 -82058529 + A-rich Low_complexity Low_complexity 1 56 0 6 1176 414 321 87 18 chr3 77542162 77542381 -82057402 - L4 LINE RTE -1160 869 636 6 1176 2229 92 22 39 chr3 77544179 77544539 -82055244 + L1_Mus3 LINE L1 6279 6632 -6 6 1176 21 36 0 0 chr3 77544558 77544586 -82055197 + AT_rich Low_complexity Low_complexity 1 28 0 6 1176 30 27 0 0 chr3 77544790 77544827 -82054956 + AT_rich Low_complexity Low_complexity 1 37 0 6 1176 899 347 29 23 chr3 77544948 77545299 -82054484 + MTE2a LTR MaLR 27 379 0 6 1176 270 0 0 0 chr3 77546525 77546555 -82053228 + (TG)n Simple_repeat Simple_repeat 1 30 0 6 1176 1627 57 5 0 chr3 77546606 77546817 -82052966 + L1Md_T LINE L1 6371 6582 0 7 1176 359 321 9 0 chr3 77547900 77548006 -82051777 + CT-rich Low_complexity Low_complexity 2 108 0 7 1176 283 316 71 0 chr3 77548088 77548186 -82051597 - PB1D10 SINE Alu -9 108 4 7 1176 1219 297 33 12 chr3 77548922 77549259 -82050524 - MTD LTR MaLR -8 411 68 7 1176 216 0 0 0 chr3 77549535 77549559 -82050224 + (CA)n Simple_repeat Simple_repeat 1 24 0 7 1176 212 167 0 0 chr3 77550166 77550208 -82049575 + A-rich Low_complexity Low_complexity 1 42 0 7 1176 808 199 23 46 chr3 77550334 77550572 -82049211 + L1_Mur2 LINE L1 908 1165 -6563 7 1176 4703 152 11 0 chr3 77550566 77551318 -82048465 - Lx2 LINE L1 -575 6422 5663 7 1176 914 192 0 12 chr3 77551301 77551470 -82048313 + Lx2 LINE L1 5530 5696 -187 7 1176 2734 201 88 11 chr3 77551466 77552098 -82047685 + L1_Mur2 LINE L1 1259 1928 -3949 7 1176 240 111 0 0 chr3 77552098 77552134 -82047649 + (CA)n Simple_repeat Simple_repeat 1 36 0 7 1176 2734 201 88 11 chr3 77552134 77552225 -82047558 + L1_Mur2 LINE L1 1929 2038 -3839 7 1176 2790 204 112 75 chr3 77552225 77552607 -82047176 + RMER19B LTR ERVK 1 366 -536 7 1176 246 62 0 0 chr3 77552607 77552639 -82047144 + (CA)n Simple_repeat Simple_repeat 2 33 0 8 1176 2790 204 112 75 chr3 77552639 77552977 -82046806 + RMER19B LTR ERVK 367 747 -155 7 1176 318 49 0 0 chr3 77552982 77553023 -82046760 - RMER17C LTR ERVK -369 41 1 8 1176 989 206 40 27 chr3 77553061 77553525 -82046258 - RMER17C LTR ERVK -33 377 1 8 1176 1502 172 14 3 chr3 77553526 77553812 -82045971 + L1_Mur2 LINE L1 2082 2370 -3507 7 1176 1948 277 53 37 chr3 77553787 77554645 -82045138 + Lx5 LINE L1 6164 7055 -3 8 1176 214 409 25 63 chr3 77554655 77554814 -82044969 + ID_B1 SINE B4 70 222 -2 8 1176 2386 287 88 44 chr3 77555682 77556576 -82043207 + Lx6 LINE L1 5901 7146 -314 8 1176 2050 176 48 5 chr3 77556576 77556954 -82042829 + ORR1B1 LTR MaLR 1 394 0 8 1176 2386 279 106 37 chr3 77556954 77557248 -82042535 + Lx6 LINE L1 7147 7433 -27 8 1176 414 53 35 0 chr3 77557414 77557471 -82042312 - MTB_Mm LTR MaLR 0 407 349 8 1176 5551 169 96 20 chr3 77557454 77558531 -82041252 + MTB-int LTR MaLR 10 1163 -95 8 1176 2989 78 2 2 chr3 77558531 77558927 -82040856 - MTA_Mm LTR MaLR 0 396 1 8 1176 5551 169 96 20 chr3 77558927 77559008 -82040775 + MTB-int LTR MaLR 1164 1255 -3 8 1176 2891 93 2 10 chr3 77559009 77559034 -82040749 + MTB LTR MaLR 1 22 -378 8 1176 267 54 0 0 chr3 77559034 77559071 -82040712 + (TG)n Simple_repeat Simple_repeat 2 38 0 9 1176 2891 93 2 10 chr3 77559071 77559448 -82040335 + MTB LTR MaLR 23 400 0 8 1176 740 180 0 0 chr3 77559525 77559647 -82040136 + RLTR26 LTR ERVK 521 642 0 9 1176 207 69 0 0 chr3 77559733 77559762 -82040021 + (TTG)n Simple_repeat Simple_repeat 2 30 0 9 1176 2049 178 239 12 chr3 77560604 77561094 -82038689 - MT2B LTR ERVL 0 601 1 9 1176 486 0 0 0 chr3 77561762 77561816 -82037967 + (TAAA)n Simple_repeat Simple_repeat 2 55 0 9 1176 1430 262 69 40 chr3 77561995 77562499 -82037284 - RMER5 LTR ERV1 0 534 16 9 1176 1038 204 34 98 chr3 77562904 77563242 -82036541 + MER67C LTR ERV1 40 385 -326 9 1176 436 308 55 15 chr3 77563336 77563537 -82036246 + L1MA6 LINE L1 6080 6288 -12 9 1176 31497 80 4 2 chr3 77564334 77569524 -82030259 + L1Md_F2 LINE L1 387 5586 -297 9 1176 7755 55 5 11 chr3 77569525 77570526 -82029257 + L1Md_F2 LINE L1 5588 6582 0 9 1176 1238 251 76 47 chr3 77570939 77571348 -82028435 + MTC LTR MaLR 1 421 0 9 1176 219 69 0 0 chr3 77572888 77572917 -82026866 + (TAAA)n Simple_repeat Simple_repeat 1 29 0 1 1176 543 323 78 81 chr3 77572917 77573200 -82026583 - ORR1E LTR MaLR -5 354 73 1 1176 32 43 0 0 chr3 77573224 77573270 -82026513 + AT_rich Low_complexity Low_complexity 1 46 0 1 1176 29345 132 24 23 chr3 77573270 77579625 -82020158 - L1_Mus1 LINE L1 -1 6566 217 1 1176 379 269 25 0 chr3 77579706 77579825 -82019958 + L1MA4A LINE L1 5811 5932 -371 1 1176 255 154 0 0 chr3 77580102 77580141 -82019642 + RMER6C LTR ERVK 1 39 -681 1 1176 1341 164 83 25 chr3 77580213 77580538 -82019245 + RMER6C LTR ERVK 347 690 0 1 1176 35 24 0 0 chr3 77581192 77581234 -82018549 + AT_rich Low_complexity Low_complexity 1 42 0 1 1176 26 0 0 0 chr3 77581901 77581927 -82017856 + AT_rich Low_complexity Low_complexity 1 26 0 1 1176 705 291 14 5 chr3 77583906 77584120 -82015663 + B3 SINE B2 1 216 0 1 1176 2057 102 98 3 chr3 77584394 77584730 -82015053 + Lx LINE L1 6280 6647 -7 1 1176 228 238 0 0 chr3 77584794 77584857 -82014926 + C-rich Low_complexity Low_complexity 6 68 0 1 1176 28 29 0 0 chr3 77585234 77585269 -82014514 + AT_rich Low_complexity Low_complexity 1 35 0 1 1176 252 59 0 0 chr3 77585554 77585588 -82014195 + (TC)n Simple_repeat Simple_repeat 2 35 0 1 1176 836 139 52 0 chr3 77586107 77586280 -82013503 + MYSERV16_I-int LTR ERVK 1116 1297 -1029 1 1176 533 254 134 12 chr3 77586903 77587074 -82012709 + Lx6 LINE L1 7242 7433 -27 1 1176 554 0 15 0 chr3 77587100 77587166 -82012617 + (GA)n Simple_repeat Simple_repeat 2 68 0 1 1176 1171 292 83 19 chr3 77587741 77588213 -82011570 - RMER5 LTR ERV1 0 534 33 1 1176 1170 259 57 3 chr3 77588341 77588639 -82011144 - Lx6 LINE L1 -797 6663 6350 1 1176 25 0 0 0 chr3 77589063 77589088 -82010695 + AT_rich Low_complexity Low_complexity 1 25 0 1 1176 280 167 28 0 chr3 77589088 77589160 -82010623 + (TG)n Simple_repeat Simple_repeat 1 74 0 1 1176 363 173 0 0 chr3 77589159 77589240 -82010543 + GA-rich Low_complexity Low_complexity 1 81 0 1 1176 378 348 0 34 chr3 77589340 77589486 -82010297 - ID_B1 SINE B4 0 224 84 1 1176 261 0 0 0 chr3 77589969 77589998 -82009785 + (CA)n Simple_repeat Simple_repeat 1 29 0 1 1176 22 0 0 0 chr3 77590054 77590076 -82009707 + AT_rich Low_complexity Low_complexity 1 22 0 1 1176 198 91 0 0 chr3 77590076 77590109 -82009674 + (TG)n Simple_repeat Simple_repeat 2 34 0 1 1176 466 257 21 42 chr3 77591365 77591507 -82008276 + ORR1D2 LTR MaLR 4 142 -228 1 1176 2764 151 147 0 chr3 77591520 77592030 -82007753 - RMER4B LTR ERVK 0 585 1 1 1176 456 243 8 17 chr3 77592170 77592308 -82007475 - ORR1D2 LTR MaLR 0 379 245 1 1176 221 328 43 70 chr3 77592351 77592538 -82007245 + L2 LINE L2 1985 2166 -1253 1 1176 2650 91 3 3 chr3 77592957 77593320 -82006463 - L1_Mus2 LINE L1 0 6566 6204 1 1176 977 120 34 0 chr3 77593321 77593496 -82006287 - MusHAL1 LINE L1 -2475 237 57 1 1176 1363 206 10 20 chr3 77593484 77593777 -82006006 - L1Md_F LINE L1 -5652 867 578 1 1176 274 137 20 0 chr3 77593828 77593879 -82005904 - L1Md_F LINE L1 -5794 725 674 1 1176 313 278 9 24 chr3 77593873 77594005 -82005778 - L1VL1 LINE L1 -6339 83 4 1 1176 309 140 0 0 chr3 77594403 77594460 -82005323 + (T)n Simple_repeat Simple_repeat 1 57 0 1 18 1150 272 146 7 chr3 77594542 77594994 -82004789 + RLTR20B3 LTR ERVK 21 535 -42 1 1177 573 274 68 6 chr3 77595129 77595305 -82004478 - Lx8 LINE L1 -365 7108 6922 1 1177 21 0 0 0 chr3 77595322 77595343 -82004440 + AT_rich Low_complexity Low_complexity 1 21 0 1 1177 1453 301 99 5 chr3 77595443 77596030 -82003753 - Lx8 LINE L1 -6 7467 6826 1 1177 508 286 117 18 chr3 77596034 77596256 -82003527 + L1MC3 LINE L1 7412 7658 -127 1 1177 1307 226 107 0 chr3 77596256 77596601 -82003182 + ORR1C2 LTR MaLR 1 382 -2 1 1177 508 286 117 18 chr3 77596601 77596659 -82003124 + L1MC3 LINE L1 7659 7719 -66 1 1177 475 67 22 33 chr3 77597107 77597199 -82002584 + (GGA)n Simple_repeat Simple_repeat 1 91 0 1 1177 181 22 85 21 chr3 77598530 77598577 -82001206 + (CAA)n Simple_repeat Simple_repeat 2 51 0 1 1177 450 0 0 0 chr3 77598876 77598926 -82000857 + (CA)n Simple_repeat Simple_repeat 1 50 0 1 1177 23209 161 12 21 chr3 77599001 77603039 -81996744 - L1_Mus4 LINE L1 -8 6628 2625 1 1177 206 0 0 65 chr3 77603039 77603070 -81996713 + (TCTA)n Simple_repeat Simple_repeat 4 32 0 1 1177 23209 171 43 20 chr3 77603070 77605048 -81994735 - L1_Mus4 LINE L1 -3259 2624 609 1 1177 1509 313 59 49 chr3 77605101 77606137 -81993646 - L1_Rod LINE L1 -89 5758 4713 1 1177 21 95 0 0 chr3 77606295 77606358 -81993425 + AT_rich Low_complexity Low_complexity 1 63 0 1 1177 369 282 107 48 chr3 77606394 77606748 -81993035 + L1MB7 LINE L1 5536 5910 -274 1 1177 266 0 0 29 chr3 77606782 77606817 -81992966 + (TG)n Simple_repeat Simple_repeat 1 34 0 1 1177 23 86 0 0 chr3 77607177 77607235 -81992548 + AT_rich Low_complexity Low_complexity 1 58 0 1 1177 1081 242 74 18 chr3 77607908 77608245 -81991538 + L1VL2 LINE L1 136 491 -5844 1 1177 323 351 5 26 chr3 77608247 77608437 -81991346 + L1VL2 LINE L1 194 379 -5956 1 1177 3969 107 29 15 chr3 77608431 77608791 -81990992 + L1_Mur1 LINE L1 2957 3311 -603 1 1177 979 81 0 29 chr3 77608791 77608930 -81990853 + B1_Mus2 SINE Alu 1 135 -12 1 1177 405 0 0 0 chr3 77608931 77608976 -81990807 + (CAAAA)n Simple_repeat Simple_repeat 2 46 0 1 1177 3969 124 26 16 chr3 77608976 77609382 -81990401 + L1_Mur1 LINE L1 3312 3730 -2156 1 1177 1220 187 13 0 chr3 77609373 77609608 -81990175 + Lx LINE L1 4241 4478 -1405 1 1177 5648 153 16 5 chr3 77609609 77611146 -81988637 + Lx LINE L1 4833 6389 -265 1 1177 6013 95 9 16 chr3 77611146 77612016 -81987767 + Lx3_Mus LINE L1 6139 7002 -7 1 1177 2430 150 5 5 chr3 77612016 77612417 -81987366 - L1_Mm LINE L1 -245 5638 5238 1 1177 2971 116 15 25 chr3 77612417 77612894 -81986889 + L1_Mus3 LINE L1 6165 6636 -2 1 1177 440 283 180 6 chr3 77613239 77613406 -81986377 - MLT1E1A LTR MaLR -484 196 1 1 1177 23 0 0 0 chr3 77613991 77614014 -81985769 + AT_rich Low_complexity Low_complexity 1 23 0 1 1177 334 303 141 44 chr3 77614488 77614737 -81985046 - L1M5 LINE L1 -1321 4825 4553 1 1177 38415 9 1 1 chr3 77615997 77621783 -81978000 + L1Md_A LINE L1 1 5586 -297 1 1177 9034 2 0 0 chr3 77621783 77622779 -81977004 + L1Md_A LINE L1 5587 6582 0 1 1177 727 308 75 33 chr3 77622785 77623184 -81976599 + L1M2 LINE L1 5388 5803 -494 1 1177 21 0 0 0 chr3 77623252 77623273 -81976510 + AT_rich Low_complexity Low_complexity 1 21 0 1 1177 525 364 87 40 chr3 77623561 77624088 -81975695 + Lx8 LINE L1 6626 7177 -296 1 1177 26 30 0 0 chr3 77624496 77624529 -81975254 + AT_rich Low_complexity Low_complexity 1 33 0 1 1177 200 132 0 26 chr3 77624769 77624808 -81974975 + (TTG)n Simple_repeat Simple_repeat 2 39 0 1 1177 229 342 79 16 chr3 77625141 77625258 -81974525 - PB1D10 SINE Alu -18 131 13 1 1177 2833 228 64 109 chr3 77625542 77625935 -81973848 - RMER1C Other Other -1 1341 1034 1 1177 2243 37 4 0 chr3 77625935 77626204 -81973579 + L1Md_F2 LINE L1 6301 6570 -12 1 1177 2833 228 64 109 chr3 77626204 77626671 -81973112 - RMER1C Other Other -309 1033 520 1 1177 674 242 56 6 chr3 77626670 77626832 -81972951 + RMER1C Other Other 506 675 -667 1 1177 22 56 0 0 chr3 77627017 77627053 -81972730 + AT_rich Low_complexity Low_complexity 1 36 0 1 1177 252 0 0 0 chr3 77627441 77627469 -81972314 + (TAA)n Simple_repeat Simple_repeat 2 29 0 1 1177 2413 162 23 14 chr3 77629087 77629524 -81970259 - Lx4A LINE L1 0 7058 6618 1 1177 417 20 0 0 chr3 77629910 77629960 -81969823 + (TG)n Simple_repeat Simple_repeat 1 50 0 1 1177 22 56 0 0 chr3 77630518 77630554 -81969229 + AT_rich Low_complexity Low_complexity 1 36 0 1 1177 586 324 83 44 chr3 77631580 77631942 -81967841 + MTEb LTR MaLR 2 377 -2 1 1177 398 290 165 21 chr3 77632041 77632251 -81967532 + MLT1D LTR MaLR 256 622 -2 1 1177 644 159 7 0 chr3 77632997 77633135 -81966648 + (TTTA)n Simple_repeat Simple_repeat 1 139 0 1 1177 24 0 0 0 chr3 77634497 77634521 -81965262 + AT_rich Low_complexity Low_complexity 1 24 0 1 1177 923 279 45 26 chr3 77638582 77638891 -81960892 + Lx6 LINE L1 5906 6220 -1240 1 1177 1417 297 131 12 chr3 77638939 77639528 -81960255 + Lx6 LINE L1 6665 7323 -137 1 1177 220 196 0 35 chr3 77639530 77639588 -81960195 + T-rich Low_complexity Low_complexity 1 56 0 1 1177 229 279 31 62 chr3 77640692 77640757 -81959026 + PB1D10 SINE Alu 22 84 -33 1 1177 37 39 0 0 chr3 77641405 77641456 -81958327 + AT_rich Low_complexity Low_complexity 1 51 0 1 1177 961 102 168 6 chr3 77642525 77642692 -81957091 + B2_Mm2 SINE B2 2 195 0 1 1177 6605 187 32 14 chr3 77642904 77645068 -81954715 - Lx5 LINE L1 -3 7047 4841 1 1177 423 196 13 0 chr3 77645643 77645738 -81954045 - Lx LINE L1 -370 6266 6167 1 1177 4425 134 31 23 chr3 77645738 77646507 -81953276 + Lx LINE L1 5880 6654 0 1 1177 233 405 0 12 chr3 77646881 77646961 -81952822 - ID4_ SINE ID 0 83 5 1 1177 384 330 167 43 chr3 77647821 77648144 -81951639 - Lx8 LINE L1 -144 7329 6967 1 1177 507 33 0 0 chr3 77648252 77648313 -81951470 + (CA)n Simple_repeat Simple_repeat 2 62 0 1 1177 366 23 0 0 chr3 77649188 77649231 -81950552 + (TG)n Simple_repeat Simple_repeat 1 43 0 1 1177 348 349 107 15 chr3 77649530 77649792 -81949991 - L1MEg LINE L1 -4659 1425 1140 1 1177 1424 63 5 10 chr3 77650831 77651023 -81948760 + B2_Mm2 SINE B2 2 192 -3 1 1177 4264 125 2 0 chr3 77651089 77651729 -81948054 + L1_Mm LINE L1 4563 5203 -680 1 1177 353 288 12 126 chr3 77651799 77651996 -81947787 - Lx6 LINE L1 -26 7434 7264 1 1177 851 18 0 0 chr3 77651996 77652106 -81947677 + L1Md_A LINE L1 6473 6582 0 1 1177 353 288 12 126 chr3 77652106 77652162 -81947621 - Lx6 LINE L1 -197 7263 7210 1 1177 2038 216 55 9 chr3 77652163 77652621 -81947162 + RLTR20B3 LTR ERVK 9 487 -90 1 1177 287 68 96 0 chr3 77652621 77652694 -81947089 + (TCTCTG)n Simple_repeat Simple_repeat 1 80 0 2 1177 423 0 0 0 chr3 77652696 77652743 -81947040 + (TG)n Simple_repeat Simple_repeat 2 48 0 2 1177 452 204 10 31 chr3 77652744 77652840 -81946943 + RLTR20B3 LTR ERVK 484 577 0 1 1177 6618 175 42 43 chr3 77654113 77654582 -81945201 + MYSERV16_I-int LTR ERVK 1 459 -1867 2 1177 2753 53 0 3 chr3 77654582 77654925 -81944858 - L1_Mus1 LINE L1 -1 6566 6225 2 1177 6618 175 42 43 chr3 77654925 77655843 -81943940 + MYSERV16_I-int LTR ERVK 460 1387 -939 2 1177 393 206 103 0 chr3 77655844 77655941 -81943842 - L1_Mur3 LINE L1 -4338 1539 1433 2 1177 396 40 0 0 chr3 77655944 77655994 -81943789 + (TTA)n Simple_repeat Simple_repeat 2 51 0 2 1177 5095 76 37 1 chr3 77655994 77656691 -81943092 - L1_Mus3 LINE L1 -31 6607 5886 2 1177 398 135 27 13 chr3 77656666 77656741 -81943042 - L1_Mus3 LINE L1 -859 5777 5702 2 1177 299 240 95 7 chr3 77656746 77656893 -81942890 - L1_Mur3 LINE L1 -4462 1418 1259 2 1177 216 0 0 0 chr3 77656894 77656918 -81942865 + (T)n Simple_repeat Simple_repeat 1 24 0 2 1177 342 224 46 26 chr3 77656921 77657056 -81942727 - L1_Mur3 LINE L1 -6433 1295 1162 2 1177 231 36 0 0 chr3 77657056 77657084 -81942699 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 2 1177 1870 306 85 13 chr3 77657084 77657906 -81941877 - L1_Mur3 LINE L1 -6566 1162 86 2 1177 25 0 0 0 chr3 77659086 77659111 -81940672 + AT_rich Low_complexity Low_complexity 1 25 0 2 1177 23 54 0 0 chr3 77659817 77659854 -81939929 + AT_rich Low_complexity Low_complexity 1 37 0 2 1177 276 30 0 0 chr3 77659942 77659975 -81939808 + (TG)n Simple_repeat Simple_repeat 2 34 0 2 1177 22 0 0 0 chr3 77660672 77660694 -81939089 + AT_rich Low_complexity Low_complexity 1 22 0 2 1177 359 254 7 0 chr3 77660989 77661127 -81938656 + (TG)n Simple_repeat Simple_repeat 2 140 0 2 1177 374 256 93 14 chr3 77661853 77661992 -81937791 + L1M2 LINE L1 4229 4378 -1765 2 1177 1924 181 87 5 chr3 77662002 77662391 -81937392 - MTC LTR MaLR 0 421 1 2 1177 3031 76 45 28 chr3 77662509 77662971 -81936812 + Lx3_Mus LINE L1 6540 7009 0 2 1177 23 33 0 0 chr3 77663181 77663211 -81936572 + AT_rich Low_complexity Low_complexity 1 30 0 2 1177 26 0 0 0 chr3 77663335 77663361 -81936422 + AT_rich Low_complexity Low_complexity 1 26 0 2 1177 6813 145 64 21 chr3 77663380 77664598 -81935185 - Lx3C LINE L1 0 6976 5707 2 1177 703 129 0 17 chr3 77664593 77664711 -81935072 + L1Md_F3 LINE L1 5106 5221 -665 2 1177 1234 131 2 1 chr3 77664711 77664903 -81934880 + L1Md_F3 LINE L1 5565 5755 -829 2 1177 25 0 0 0 chr3 77664908 77664933 -81934850 + AT_rich Low_complexity Low_complexity 1 25 0 2 1177 1553 211 117 13 chr3 77667097 77667482 -81932301 + Lx2B LINE L1 6573 6997 -3 2 1177 747 194 28 83 chr3 77668872 77669052 -81930731 - MTD LTR MaLR -55 364 195 2 1177 226 325 134 21 chr3 77669224 77669463 -81930320 - L1MA9 LINE L1 -228 6084 5819 2 1177 424 354 73 14 chr3 77669972 77670190 -81929593 - Tigger5 DNA MER2_type -2166 240 10 2 1177 371 294 62 31 chr3 77670295 77670525 -81929258 - L1MA9 LINE L1 -581 5731 5488 2 1177 6035 250 48 30 chr3 77670855 77674057 -81925726 - Lx6 LINE L1 -5 7455 4183 2 1177 331 329 20 60 chr3 77674076 77674225 -81925558 - RLTR25A LTR ERVK -40 988 846 2 1177 436 216 62 0 chr3 77674230 77674327 -81925456 - RLTR25A LTR ERVK -306 722 620 2 1177 1621 210 52 37 chr3 77674300 77674765 -81925018 - ORR1A3-int LTR MaLR -996 967 496 2 1177 2068 217 75 67 chr3 77674681 77675200 -81924583 - RLTR25A LTR ERVK -580 523 1 2 1177 1238 194 204 25 chr3 77675200 77675379 -81924404 - Lx6 LINE L1 -1691 4189 3959 2 1177 282 56 0 0 chr3 77675379 77675415 -81924368 + (CA)n Simple_repeat Simple_repeat 1 36 0 2 1177 1238 194 204 25 chr3 77675415 77675642 -81924141 - Lx6 LINE L1 -1922 3958 3711 2 1177 1062 235 53 90 chr3 77675610 77676064 -81923719 - Lx6 LINE L1 -2511 3369 2933 2 1177 338 94 19 0 chr3 77676071 77676124 -81923659 - MusHAL1 LINE L1 -937 1775 1722 2 1177 2219 207 50 48 chr3 77676124 77676309 -81923474 - Lx6 LINE L1 -3610 2270 2059 2 1177 348 24 0 0 chr3 77676309 77676350 -81923433 + (TG)n Simple_repeat Simple_repeat 2 42 0 2 1177 2219 207 50 48 chr3 77676350 77676787 -81922996 - Lx6 LINE L1 -3822 2058 1648 2 1177 350 166 93 105 chr3 77677105 77677217 -81922566 - Lx6 LINE L1 -6709 1019 917 2 1177 198 0 0 0 chr3 77677217 77677239 -81922544 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 2 1177 350 166 93 105 chr3 77677239 77677288 -81922495 - Lx6 LINE L1 -6812 916 860 2 1177 264 234 148 70 chr3 77677865 77677980 -81921803 - B3A SINE B2 -73 125 2 2 1177 461 355 16 31 chr3 77677988 77678180 -81921603 - B3A SINE B2 -1 197 9 2 1177 281 297 58 19 chr3 77678236 77678339 -81921444 + MLT1A0 LTR MaLR 259 365 0 2 1177 259 390 10 0 chr3 77678532 77678632 -81921151 + MER47A DNA MER2_type 2 102 -264 2 1177 1813 181 34 6 chr3 77679293 77679621 -81920162 - Lx4A LINE L1 0 7058 6722 2 1177 3752 179 23 1 chr3 77679624 77680289 -81919494 + Lx4A LINE L1 6006 6684 -374 2 1177 1211 287 80 8 chr3 77681156 77681542 -81918241 - MTD LTR MaLR -5 414 1 2 1177 251 54 27 0 chr3 77681656 77681693 -81918090 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 2 1177 797 332 68 7 chr3 77681829 77682238 -81917545 + RMER15-int LTR ERVL 783 1216 -3783 2 1177 645 304 59 47 chr3 77682346 77682750 -81917033 + RMER15-int LTR ERVL 1359 1767 -3232 2 1177 1332 314 99 23 chr3 77683254 77683811 -81915972 + RMER15-int LTR ERVL 4136 4734 -265 2 1177 183 129 0 0 chr3 77683857 77683888 -81915895 + (T)n Simple_repeat Simple_repeat 1 31 0 2 1177 34512 72 7 5 chr3 77684116 77689896 -81909887 - L1Md_F3 LINE L1 0 6584 797 2 1177 1512 220 14 11 chr3 77689892 77690250 -81909533 + L1Md_A LINE L1 448 806 -5918 2 1177 190 0 67 0 chr3 77690253 77690283 -81909500 + (TTTG)n Simple_repeat Simple_repeat 3 34 0 2 1177 267 311 95 15 chr3 77690673 77690810 -81908973 + RMER15 LTR ERVL 378 525 -50 2 1177 265 290 141 31 chr3 77691364 77691492 -81908291 - ID_B1 SINE B4 -1 223 82 2 1177 28 0 0 0 chr3 77693243 77693271 -81906512 + AT_rich Low_complexity Low_complexity 1 28 0 2 1177 23 33 0 0 chr3 77693332 77693362 -81906421 + AT_rich Low_complexity Low_complexity 1 30 0 2 1177 483 278 30 11 chr3 77693621 77693760 -81906023 - B3A SINE B2 -13 203 1 2 1177 7386 51 2 2 chr3 77693997 77694918 -81904865 + L1Md_F2 LINE L1 5662 6582 0 2 1177 322 379 0 0 chr3 77695389 77695484 -81904299 - PB1D10 SINE Alu -22 95 1 2 1177 2097 270 53 42 chr3 77695711 77697068 -81902715 + RMER1B Other Other 1 1052 -14 2 1177 8674 74 2 0 chr3 77697142 77698278 -81901505 + L1Md_F2 LINE L1 4447 5584 -299 2 1177 7660 63 2 9 chr3 77698280 77699282 -81900501 + L1Md_F2 LINE L1 5587 6581 -1 2 1177 195 182 0 0 chr3 77701827 77701854 -81897929 + T-rich Low_complexity Low_complexity 29 55 0 2 1177 1270 27 0 0 chr3 77701854 77702001 -81897782 - B1_Mus2 SINE Alu 0 147 1 2 1177 195 182 0 0 chr3 77702001 77702028 -81897755 + T-rich Low_complexity Low_complexity 2 28 0 2 1177 372 128 0 0 chr3 77705418 77705496 -81894287 + (TCTA)n Simple_repeat Simple_repeat 4 81 0 2 1177 293 333 23 62 chr3 77706108 77706236 -81893547 + RSINE1 SINE B4 7 129 -36 2 1177 33 43 0 0 chr3 77706252 77706299 -81893484 + AT_rich Low_complexity Low_complexity 1 47 0 2 1177 252 350 60 38 chr3 77707928 77708163 -81891620 + L2 LINE L2 1313 1552 -1867 2 1177 23 0 0 0 chr3 77709686 77709709 -81890074 + AT_rich Low_complexity Low_complexity 1 23 0 2 1177 25 65 0 0 chr3 77709749 77709795 -81889988 + AT_rich Low_complexity Low_complexity 1 46 0 2 1177 345 353 194 24 chr3 77710998 77711416 -81888367 - L2 LINE L2 -477 2942 2454 2 1177 1519 247 55 5 chr3 77711452 77711851 -81887932 + MTC LTR MaLR 1 419 -2 2 1177 346 307 100 52 chr3 77712316 77712605 -81887178 - L2 LINE L2 -1833 1586 1284 2 1177 291 221 0 0 chr3 77713077 77713163 -81886620 + (TATATG)n Simple_repeat Simple_repeat 4 89 0 2 1177 21 36 0 0 chr3 77715018 77715046 -81884737 + AT_rich Low_complexity Low_complexity 1 28 0 2 1177 315 0 0 0 chr3 77715767 77715802 -81883981 + (TTG)n Simple_repeat Simple_repeat 2 36 0 2 1177 1805 31 14 0 chr3 77715812 77716034 -81883749 - L1Md_F3 LINE L1 -15 6569 6345 2 1177 422 36 0 18 chr3 77716296 77716353 -81883430 + (TC)n Simple_repeat Simple_repeat 1 56 0 2 1177 264 120 0 0 chr3 77716354 77716404 -81883379 + (TG)n Simple_repeat Simple_repeat 2 51 0 2 1177 488 310 31 53 chr3 77717648 77717873 -81881910 + ID_B1 SINE B4 2 221 -3 2 1177 358 354 95 6 chr3 77718168 77718347 -81881436 - MTE2b LTR MaLR -182 197 3 2 1177 241 321 226 14 chr3 77718349 77718570 -81881213 - MTE2b-int LTR MaLR -2 1578 1311 2 1177 1846 167 20 25 chr3 77718635 77718992 -81880791 - Lx4B LINE L1 -867 6191 5837 2 1177 312 91 0 0 chr3 77719036 77719080 -81880703 + (TTG)n Simple_repeat Simple_repeat 2 45 0 2 1177 1295 167 38 4 chr3 77719080 77719320 -81880463 - Lx4A LINE L1 -5 7053 6806 2 1177 327 359 88 27 chr3 77719788 77720051 -81879732 + L1M5 LINE L1 2983 3261 -2885 2 1177 23 33 0 0 chr3 77720237 77720267 -81879516 + AT_rich Low_complexity Low_complexity 1 30 0 2 1177 5182 184 39 11 chr3 77722236 77723254 -81876529 + Lx3C LINE L1 5890 6936 -40 2 1177 22 0 0 0 chr3 77723270 77723292 -81876491 + AT_rich Low_complexity Low_complexity 1 22 0 2 1177 335 369 65 26 chr3 77723955 77724342 -81875441 + ERVL-E-int LTR ERVL 2638 3039 -2628 2 1177 262 242 45 0 chr3 77724524 77724590 -81875193 + ERVL-E-int LTR ERVL 3224 3292 -2375 2 1177 306 359 23 8 chr3 77724956 77725088 -81874695 - MER5A1 DNA MER1_type -6 160 27 2 1178 253 203 31 0 chr3 77725777 77725841 -81873942 + (TA)n Simple_repeat Simple_repeat 2 67 0 2 1178 258 53 132 0 chr3 77726038 77726076 -81873707 - Lx3_Mus LINE L1 -484 6525 6483 2 1178 268 311 77 53 chr3 77726063 77726233 -81873550 - Lx7 LINE L1 -512 7184 7011 2 1178 30 45 0 0 chr3 77726437 77726481 -81873302 + AT_rich Low_complexity Low_complexity 1 44 0 2 1178 8865 107 36 4 chr3 77726481 77728178 -81871605 - Lx3A LINE L1 -9 6972 5232 2 1178 1170 258 37 22 chr3 77728179 77728500 -81871283 - Lx6 LINE L1 -4 7456 7131 2 1178 3387 261 74 24 chr3 77728547 77729654 -81870129 + Lx9 LINE L1 6169 7331 -313 2 1178 289 280 0 21 chr3 77729672 77729767 -81870016 + (TG)n Simple_repeat Simple_repeat 2 94 0 2 1178 207 245 0 0 chr3 77729777 77729826 -81869957 + GA-rich Low_complexity Low_complexity 2 50 0 2 1178 21 71 0 0 chr3 77729943 77729985 -81869798 + AT_rich Low_complexity Low_complexity 1 42 0 2 1178 280 286 27 0 chr3 77730013 77730125 -81869658 - L1MA6 LINE L1 -5 6295 6181 2 1178 1550 79 0 23 chr3 77730343 77730562 -81869221 + L1_Mus2 LINE L1 6353 6566 0 2 1178 32658 30 0 0 chr3 77730723 77735386 -81864397 - L1Md_T LINE L1 -12 6570 1908 2 1178 1301 48 18 0 chr3 77736615 77736783 -81863000 + L1Md_F3 LINE L1 6412 6582 -2 2 1178 409 345 19 39 chr3 77737187 77737341 -81862442 - ORR1E LTR MaLR -208 151 1 2 1178 656 362 82 11 chr3 77737341 77737677 -81862106 - MTE-int LTR MaLR -53 1527 1167 2 1178 465 312 64 10 chr3 77737806 77738010 -81861773 - MTE-int LTR MaLR -1362 218 4 2 1178 489 92 0 0 chr3 77738615 77738691 -81861092 + (CA)n Simple_repeat Simple_repeat 1 76 0 2 1178 26 74 0 0 chr3 77738999 77739053 -81860730 + AT_rich Low_complexity Low_complexity 1 54 0 2 1178 1766 120 39 3 chr3 77739698 77739983 -81859800 - L1_Mus4 LINE L1 -4 6632 6338 2 1178 1578 87 4 21 chr3 77739985 77740219 -81859564 + L1_Mus4 LINE L1 5719 5948 -688 3 1178 719 205 12 0 chr3 77740567 77740686 -81859097 + polypyrimidine Low_complexity Low_complexity 54 174 0 3 1178 1389 61 0 0 chr3 77740686 77740866 -81858917 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 3 1178 719 205 12 0 chr3 77740866 77740917 -81858866 + polypyrimidine Low_complexity Low_complexity 3 53 0 3 1178 3990 158 19 65 chr3 77741472 77742409 -81857374 - RLTR13C1 LTR ERVK 0 902 7 3 1178 767 306 178 7 chr3 77742713 77743022 -81856761 + ORR1D2 LTR MaLR 9 370 0 3 1178 234 62 0 0 chr3 77743970 77744002 -81855781 + (TG)n Simple_repeat Simple_repeat 1 32 0 3 1178 422 103 13 0 chr3 77744002 77744080 -81855703 + (GA)n Simple_repeat Simple_repeat 2 80 0 3 1178 24 32 0 0 chr3 77746186 77746217 -81853566 + AT_rich Low_complexity Low_complexity 1 31 0 3 1178 207 228 0 17 chr3 77746318 77746376 -81853407 + (TA)n Simple_repeat Simple_repeat 2 58 0 3 1178 6305 131 27 1 chr3 77746427 77747336 -81852447 - Lx LINE L1 -484 6170 5237 3 1178 245 29 29 0 chr3 77747336 77747370 -81852413 + (TA)n Simple_repeat Simple_repeat 2 36 0 3 1178 6305 161 28 4 chr3 77747370 77747872 -81851911 - Lx LINE L1 -647 5236 4732 3 1178 192 40 0 0 chr3 77747872 77747897 -81851886 + (TTTTTG)n Simple_repeat Simple_repeat 2 26 0 3 1178 652 201 52 0 chr3 77748336 77748470 -81851313 + B1_Mur4 SINE Alu 3 143 -7 3 1178 228 67 0 0 chr3 77748477 77748507 -81851276 + (CATA)n Simple_repeat Simple_repeat 2 31 0 3 1178 26 74 0 0 chr3 77748669 77748723 -81851060 + AT_rich Low_complexity Low_complexity 1 54 0 3 1178 521 138 0 11 chr3 77749286 77749381 -81850402 + (TCTCCC)n Simple_repeat Simple_repeat 3 96 0 3 1178 335 283 83 40 chr3 77749653 77749929 -81849854 - L1MC3 LINE L1 -38 7747 7460 3 1178 568 288 121 57 chr3 77750337 77750848 -81848935 - L1MC3 LINE L1 -350 7435 6892 3 1178 317 359 65 81 chr3 77751044 77751441 -81848342 - MT2A LTR ERVL -141 392 2 3 1178 3545 115 29 13 chr3 77754069 77754624 -81845159 + Lx3_Mus LINE L1 6446 7009 0 3 1178 7204 105 7 12 chr3 77754723 77755536 -81844247 + L1_Mus2 LINE L1 4903 5717 -166 3 1178 3435 20 2 0 chr3 77755536 77755929 -81843854 - MTA_Mm LTR MaLR 0 396 3 3 1178 9009 37 4 4 chr3 77755931 77757029 -81842754 - MTA_Mm-int LTR MaLR 0 1098 1 3 1178 3467 18 2 0 chr3 77757029 77757424 -81842359 - MTA_Mm LTR MaLR 0 396 1 3 1178 7204 77 13 17 chr3 77757424 77758269 -81841514 + L1_Mus2 LINE L1 5718 6565 -1 3 1178 591 112 0 0 chr3 77758442 77758531 -81841252 + (GAA)n Simple_repeat Simple_repeat 2 90 0 3 1178 2446 183 28 6 chr3 77759101 77759601 -81840182 + Lx2B LINE L1 5873 6383 -617 3 1178 648 167 0 8 chr3 77759603 77759730 -81840053 + Lx2B LINE L1 6606 6731 -269 3 1178 2423 113 16 8 chr3 77759737 77760119 -81839664 - RLTR9D LTR ERVK -18 385 1 3 1178 371 221 29 9 chr3 77760119 77760224 -81839559 + Lx2B LINE L1 6891 6997 -3 3 1178 8500 17 1 0 chr3 77760501 77761483 -81838300 + L1Md_T LINE L1 4604 5586 -297 3 1178 8150 49 0 0 chr3 77761484 77762479 -81837304 + L1Md_T LINE L1 5588 6582 0 3 1178 1611 341 79 40 chr3 77763256 77764911 -81834872 + ERVL-B4-int LTR ERVL 2361 4122 -1635 3 1178 1009 127 17 44 chr3 77765072 77765090 -81834693 - B2_Mm2 SINE B2 -18 177 159 3 1178 207 0 0 0 chr3 77765090 77765113 -81834670 + (TTTG)n Simple_repeat Simple_repeat 3 25 0 3 1178 1009 127 17 44 chr3 77765113 77765275 -81834508 - B2_Mm2 SINE B2 -37 158 3 3 1178 2767 282 111 37 chr3 77766910 77768194 -81831589 + Lx9 LINE L1 6105 7483 -161 3 1178 722 131 24 0 chr3 77768746 77768914 -81830869 + (TAGA)n Simple_repeat Simple_repeat 1 172 0 3 1178 576 275 155 62 chr3 77769136 77769477 -81830306 + MTEa LTR MaLR 3 375 -4 3 1178 3487 28 0 0 chr3 77771510 77771906 -81827877 + MTA_Mm LTR MaLR 1 396 0 3 1178 8991 42 2 1 chr3 77771906 77773001 -81826782 + MTA_Mm-int LTR MaLR 1 1096 -2 3 1178 3478 23 0 0 chr3 77773003 77773399 -81826384 + MTA_Mm LTR MaLR 1 396 0 3 1178 9082 35 2 4 chr3 77773399 77774497 -81825286 + MTA_Mm-int LTR MaLR 1 1096 -2 3 1178 3501 25 0 0 chr3 77774499 77774895 -81824888 + MTA_Mm LTR MaLR 1 396 0 3 1178 492 287 6 58 chr3 77775433 77775470 -81824313 + Lx2A1 LINE L1 6553 6584 -424 3 1178 1729 105 30 4 chr3 77775470 77775737 -81824046 - L1_Mus3 LINE L1 0 6638 6365 3 1178 1057 58 0 0 chr3 77775737 77775874 -81823909 + L1_Mus3 LINE L1 6240 6376 -262 3 1178 530 343 18 44 chr3 77776344 77776731 -81823052 - MTEb LTR MaLR 0 379 3 3 1178 1885 321 112 32 chr3 77776767 77777854 -81821929 - MTEb-int LTR MaLR -16 1564 329 3 1178 243 0 0 0 chr3 77777854 77777881 -81821902 + (A)n Simple_repeat Simple_repeat 1 27 0 3 1178 615 138 30 8 chr3 77778575 77778706 -81821077 - Lx LINE L1 -5 6649 6516 3 1178 411 316 59 5 chr3 77778796 77779017 -81820766 + L1M4 LINE L1 3968 4216 -1930 3 1178 388 305 54 1 chr3 77779251 77779461 -81820322 - L1MA8 LINE L1 -299 5992 5771 3 1178 6269 68 19 1 chr3 77779641 77780435 -81819348 + RLTR13C2 LTR ERVK 1 808 0 3 1178 21 0 0 0 chr3 77781944 77781965 -81817818 + AT_rich Low_complexity Low_complexity 1 21 0 3 1178 396 0 0 0 chr3 77782468 77782512 -81817271 + (TC)n Simple_repeat Simple_repeat 2 45 0 3 1178 24 0 0 0 chr3 77782516 77782540 -81817243 + AT_rich Low_complexity Low_complexity 1 24 0 3 1178 1061 90 7 0 chr3 77782540 77782685 -81817098 - B1_Mus1 SINE Alu -1 147 2 3 1178 28 0 0 0 chr3 77783657 77783685 -81816098 + AT_rich Low_complexity Low_complexity 1 28 0 3 1178 516 16 0 0 chr3 77784182 77784243 -81815540 + (TG)n Simple_repeat Simple_repeat 2 62 0 3 1178 1233 310 52 68 chr3 77784244 77784836 -81814947 - Lx9 LINE L1 -228 7416 6834 3 1178 7139 218 43 52 chr3 77786581 77787881 -81811902 + Lx5 LINE L1 3739 5084 -796 3 1178 687 82 24 8 chr3 77787881 77788004 -81811779 + L1_Mus3 LINE L1 6507 6631 -7 3 1178 7139 274 109 87 chr3 77788004 77789957 -81809826 + Lx5 LINE L1 5085 7032 -18 3 1178 1058 69 0 33 chr3 77790313 77790463 -81809320 + B1_Mus1 SINE Alu 2 146 -2 3 1178 216 0 0 0 chr3 77790463 77790487 -81809296 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 3 1178 206 118 0 0 chr3 77791462 77791496 -81808287 + (TC)n Simple_repeat Simple_repeat 2 35 0 3 1178 1416 248 61 6 chr3 77791558 77791903 -81807880 + ORR1D1 LTR MaLR 1 364 -10 3 1178 21 0 0 0 chr3 77792074 77792095 -81807688 + AT_rich Low_complexity Low_complexity 1 21 0 3 1178 228 86 0 0 chr3 77792099 77792134 -81807649 + (GA)n Simple_repeat Simple_repeat 2 36 0 3 1178 6213 75 11 12 chr3 77792195 77793077 -81806706 - L1Md_F2 LINE L1 0 6582 5738 3 1178 1305 272 66 31 chr3 77793083 77793538 -81806245 - Lx9 LINE L1 -242 7402 6932 3 1178 397 254 114 17 chr3 77793552 77793728 -81806055 + L1_Rod LINE L1 2436 2628 -3219 3 1178 267 209 83 30 chr3 77793754 77793887 -81805896 + L1_Rod LINE L1 2821 2960 -2887 3 1178 279 130 0 0 chr3 77794038 77794092 -81805691 + (GA)n Simple_repeat Simple_repeat 1 54 0 3 1178 245 325 73 24 chr3 77795950 77796032 -81803751 + PB1D10 SINE Alu 1 86 -31 3 1178 2790 163 16 4 chr3 77796039 77796549 -81803234 - L1_Mur2 LINE L1 -294 5583 5068 3 1178 2706 154 2 2 chr3 77796549 77796993 -81802790 + Lx2B LINE L1 6556 6999 -1 3 1178 21 71 0 0 chr3 77799085 77799127 -81800656 + AT_rich Low_complexity Low_complexity 1 42 0 3 1178 337 357 104 67 chr3 77799653 77799893 -81799890 + B4 SINE B4 21 269 -23 3 1178 319 297 8 25 chr3 77799928 77800049 -81799734 + (CA)n Simple_repeat Simple_repeat 2 120 0 3 1178 1074 100 0 0 chr3 77800262 77800412 -81799371 - L1_Mm LINE L1 -2983 2900 2751 3 1178 1465 62 0 0 chr3 77800410 77800605 -81799178 + L1_Mm LINE L1 3511 3705 -2178 3 1178 2532 68 6 17 chr3 77800687 77801044 -81798739 + L1Md_F2 LINE L1 6218 6570 -12 3 1178 1572 277 48 42 chr3 77801282 77801780 -81798003 - Lx9 LINE L1 -819 6825 6325 3 1178 21 0 0 0 chr3 77801814 77801835 -81797948 + AT_rich Low_complexity Low_complexity 1 21 0 3 1178 1534 222 110 35 chr3 77801858 77802579 -81797204 - Lx9 LINE L1 -1532 6112 5301 3 1178 2053 259 152 14 chr3 77802579 77803177 -81796606 + Lx9 LINE L1 6833 7463 -181 3 1178 459 0 0 0 chr3 77803177 77803228 -81796555 + (TG)n Simple_repeat Simple_repeat 2 52 0 3 1178 2053 259 152 14 chr3 77803228 77803342 -81796441 + Lx9 LINE L1 7464 7642 -2 3 1178 2356 203 24 20 chr3 77804587 77805085 -81794698 - RLTR16 LTR ERVK 0 505 6 3 1178 243 218 0 0 chr3 77805209 77805264 -81794519 + CT-rich Low_complexity Low_complexity 1 55 0 3 1178 414 0 0 0 chr3 77805348 77805394 -81794389 + (TTTA)n Simple_repeat Simple_repeat 1 46 0 3 1178 948 109 0 0 chr3 77805394 77805531 -81794252 - B2_Mm2 SINE B2 -34 161 25 3 1178 387 0 0 0 chr3 77806328 77806371 -81793412 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 3 1178 2500 50 0 9 chr3 77806402 77806722 -81793061 - L1Md_T LINE L1 0 6582 6266 3 1178 2862 208 23 45 chr3 77807033 77807388 -81792395 + RMER6C LTR ERVK 1 348 -342 3 1178 817 85 7 7 chr3 77807388 77807530 -81792253 + (GA)n Simple_repeat Simple_repeat 2 143 0 3 1178 2862 208 23 45 chr3 77807530 77807880 -81791903 + RMER6C LTR ERVK 349 690 0 3 1178 476 82 0 102 chr3 77808051 77808159 -81791624 + L1Md_F3 LINE L1 6487 6583 -1 3 1178 898 289 93 66 chr3 77809714 77810080 -81789703 + MTEa LTR MaLR 3 378 -1 3 1178 462 252 82 24 chr3 77810159 77810366 -81789417 + L1MA4A LINE L1 3834 4052 -2088 3 1178 332 326 19 44 chr3 77812557 77812762 -81787021 - Lx9 LINE L1 -248 7396 7197 3 1178 531 0 0 0 chr3 77812832 77812891 -81786892 + (TC)n Simple_repeat Simple_repeat 2 60 0 3 1178 240 86 0 0 chr3 77812891 77812925 -81786858 + (TG)n Simple_repeat Simple_repeat 2 36 0 3 1178 387 276 0 11 chr3 77813112 77813200 -81786583 - MTD LTR MaLR -116 303 217 3 1178 310 311 37 0 chr3 77813445 77813580 -81786203 + L1MA4A LINE L1 5631 5770 -530 3 1178 326 267 142 45 chr3 77813955 77814226 -81785557 + L1MA4A LINE L1 5851 6163 -140 3 1178 638 200 17 0 chr3 77815862 77815982 -81783801 + ORR1D1 LTR MaLR 1 122 -252 3 1178 974 231 29 29 chr3 77816233 77816474 -81783309 + ORR1D1 LTR MaLR 126 366 -8 3 1178 26 0 0 0 chr3 77817689 77817715 -81782068 + AT_rich Low_complexity Low_complexity 1 26 0 3 1178 424 256 31 37 chr3 77817801 77817963 -81781820 - Lx7 LINE L1 -89 7607 7447 3 1178 811 268 21 32 chr3 77817962 77818052 -81781731 + Lx7 LINE L1 5749 5839 -1857 3 1178 2795 52 0 6 chr3 77818052 77818400 -81781383 - ORR1A0 LTR MaLR 0 346 1 3 1178 811 268 21 32 chr3 77818400 77818590 -81781193 + Lx7 LINE L1 5840 6026 -1670 3 1178 4474 159 31 95 chr3 77820632 77821568 -81778215 - RMER19B LTR ERVK -26 876 1 3 1178 560 227 68 0 chr3 77821871 77822003 -81777780 - MTC LTR MaLR -12 407 267 3 1178 777 247 0 18 chr3 77822018 77822187 -81777596 - MTC LTR MaLR -226 195 30 3 1178 237 211 19 0 chr3 77822265 77822317 -81777466 + BLACKJACK DNA AcHobo 2892 2944 0 3 1178 238 246 0 0 chr3 77822516 77822577 -81777206 + (CA)n Simple_repeat Simple_repeat 2 62 0 3 1178 1589 375 48 17 chr3 77822616 77823639 -81776144 + Lx8 LINE L1 6260 7314 -159 3 1178 22839 172 33 11 chr3 77823695 77826144 -81773639 - Lx2A1 LINE L1 -1092 5916 3447 3 1178 4523 38 0 0 chr3 77826144 77826678 -81773105 + L1Md_T LINE L1 6049 6582 0 3 1178 22839 176 28 13 chr3 77826678 77827495 -81772288 - Lx2A1 LINE L1 -2440 3446 2621 3 1178 387 0 0 0 chr3 77827495 77827538 -81772245 + (CA)n Simple_repeat Simple_repeat 2 44 0 4 1178 225 0 0 0 chr3 77827538 77827562 -81772221 + (TA)n Simple_repeat Simple_repeat 1 25 0 4 1178 22839 150 24 14 chr3 77827562 77829573 -81770210 - Lx2A1 LINE L1 -3266 2620 568 3 1178 1284 226 11 0 chr3 77829543 77829826 -81769957 - Lx2A1 LINE L1 -5997 660 375 3 1178 343 148 44 22 chr3 77829828 77829918 -81769865 - L1VL4 LINE L1 -2413 1146 1055 4 1178 28895 47 4 4 chr3 77829900 77836223 -81763560 - L1Md_T LINE L1 0 6582 307 4 1178 2269 210 36 58 chr3 77836232 77837197 -81762586 - L1VL4 LINE L1 -2484 1075 137 4 1178 763 207 201 0 chr3 77839213 77839387 -81760396 - B3 SINE B2 -6 210 2 4 1178 236 307 53 0 chr3 77839583 77839658 -81760125 - MTE-int LTR MaLR -1501 79 1 4 1178 236 294 78 47 chr3 77840004 77840197 -81759586 + L1MA5 LINE L1 2355 2553 -4296 4 1178 2047 221 67 21 chr3 77840332 77840408 -81759375 - RLTR12B LTR ERVK -23 505 433 4 1178 3379 47 7 2 chr3 77840408 77840831 -81758952 - L1Md_F3 LINE L1 -1 6583 6159 4 1178 2047 221 67 21 chr3 77840831 77841235 -81758548 - RLTR12B LTR ERVK -96 432 3 4 1178 722 293 152 28 chr3 77841339 77842104 -81757679 + L1MA5 LINE L1 2840 3699 -3146 4 1178 1725 244 42 13 chr3 77842698 77843076 -81756707 + Lx5 LINE L1 6662 7050 0 4 1178 355 323 76 65 chr3 77843165 77843754 -81756029 + L1MA5 LINE L1 3951 4546 -2299 4 1178 988 200 15 0 chr3 77843904 77844099 -81755684 - Lx9 LINE L1 -652 6992 6795 4 1178 404 249 262 23 chr3 77844481 77844528 -81755255 + Lx9 LINE L1 7323 7370 -274 4 1178 2521 223 59 20 chr3 77844528 77845192 -81754591 - RMER6C LTR ERVK 0 690 1 4 1178 404 249 262 23 chr3 77845192 77845282 -81754501 + Lx9 LINE L1 7371 7457 -187 4 1178 555 80 39 31 chr3 77845282 77845411 -81754372 + (TA)n Simple_repeat Simple_repeat 1 130 0 4 1178 404 249 262 23 chr3 77845411 77845531 -81754252 + Lx9 LINE L1 7458 7642 -2 4 1178 327 295 0 94 chr3 77845795 77846008 -81753775 + Lx7 LINE L1 7286 7478 -218 4 1178 1665 155 49 10 chr3 77846017 77846323 -81753460 + ORR1A3 LTR MaLR 1 318 -8 4 1178 490 261 99 21 chr3 77846329 77846521 -81753262 + Lx7 LINE L1 7489 7695 -1 4 1178 585 263 188 26 chr3 77846519 77847227 -81752556 + L1MA5 LINE L1 5582 6409 -584 4 1178 591 53 0 0 chr3 77847233 77847308 -81752475 + (TC)n Simple_repeat Simple_repeat 1 75 0 4 1178 653 267 133 7 chr3 77847394 77847703 -81752080 + L1MA5 LINE L1 6612 6959 -43 4 1178 1011 178 6 11 chr3 77847793 77847969 -81751814 + RMER1C Other Other 1050 1224 -118 4 1178 603 199 37 37 chr3 77847983 77848119 -81751664 + RMER1C Other Other 1196 1331 -11 4 1178 219 69 0 0 chr3 77848849 77848878 -81750905 + (GGAA)n Simple_repeat Simple_repeat 3 31 0 4 1178 314 297 129 14 chr3 77848878 77849018 -81750765 + HAL1-3A_ME LINE L1 2284 2439 -419 4 1178 225 163 0 0 chr3 77849608 77849657 -81750126 + (CATATA)n Simple_repeat Simple_repeat 4 52 0 4 1178 457 289 58 58 chr3 77849850 77850041 -81749742 - B3A SINE B2 -7 191 1 4 1178 476 262 63 14 chr3 77850925 77851068 -81748715 - B3A SINE B2 -44 154 5 4 1178 301 236 56 0 chr3 77851190 77851262 -81748521 - PB1D10 SINE Alu -8 109 34 4 1178 365 185 49 9 chr3 77852664 77852790 -81746993 - RMER1B Other Other -4 1062 887 4 1178 1686 254 81 66 chr3 77852811 77853402 -81746381 - RMER1B Other Other -315 751 152 4 1178 868 299 53 3 chr3 77853405 77853704 -81746079 - RMER1B Other Other -696 370 57 4 1178 24 67 0 0 chr3 77854895 77854940 -81744843 + AT_rich Low_complexity Low_complexity 1 45 0 4 1178 8035 43 1 2 chr3 77854940 77856149 -81743634 - L1Md_F2 LINE L1 -2 6580 5373 4 1179 450 83 74 15 chr3 77856931 77857028 -81742755 + (TA)n Simple_repeat Simple_repeat 2 107 0 4 1179 2322 66 119 11 chr3 77857028 77857380 -81742403 + RLTR10 LTR ERVK 1 390 0 4 1179 450 83 74 15 chr3 77857380 77857417 -81742366 + (TA)n Simple_repeat Simple_repeat 1 37 0 4 1179 202 261 45 0 chr3 77858197 77858267 -81741516 + GA-rich Low_complexity Low_complexity 3 76 0 4 1179 943 110 15 0 chr3 77858267 77858403 -81741380 + B1_Mus1 SINE Alu 1 138 -10 4 1179 354 45 0 0 chr3 77858403 77858447 -81741336 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 4 1179 202 261 45 0 chr3 77858447 77858463 -81741320 + polypurine Low_complexity Low_complexity 77 92 0 4 1179 1364 246 64 12 chr3 77859749 77860095 -81739688 + ORR1D1 LTR MaLR 11 374 0 4 1179 2048 299 53 27 chr3 77860232 77860330 -81739453 + Lx8 LINE L1 6106 6197 -1276 4 1179 504 32 0 0 chr3 77860330 77860392 -81739391 + (TG)n Simple_repeat Simple_repeat 1 62 0 4 1179 2048 299 53 27 chr3 77860392 77861105 -81738678 + Lx8 LINE L1 6198 6937 -536 4 1179 642 414 58 74 chr3 77861148 77861863 -81737920 + MLT-int LTR MaLR 651 1367 -368 4 1179 1132 68 0 0 chr3 77861863 77862010 -81737773 - B1_Mus1 SINE Alu 0 148 2 4 1179 642 414 58 74 chr3 77862010 77862089 -81737694 + MLT-int LTR MaLR 1368 1432 -303 4 1179 493 274 57 32 chr3 77862180 77862338 -81737445 - RSINE1 SINE B4 -1 164 3 4 1179 445 320 45 37 chr3 77862338 77862581 -81737202 + MLT-int LTR MaLR 1442 1686 -49 4 1179 250 275 14 28 chr3 77862672 77862743 -81737040 - ID2 SINE ID -11 72 3 4 1179 21 71 0 0 chr3 77863829 77863871 -81735912 + AT_rich Low_complexity Low_complexity 1 42 0 4 1179 207 100 0 0 chr3 77865033 77865063 -81734720 + (CA)n Simple_repeat Simple_repeat 1 30 0 4 1179 350 136 0 29 chr3 77865145 77865213 -81734570 + GA-rich Low_complexity Low_complexity 1 66 0 4 1179 205 283 0 16 chr3 77865460 77865521 -81734262 + (TATG)n Simple_repeat Simple_repeat 3 62 0 4 1179 207 0 0 0 chr3 77865521 77865544 -81734239 + (TG)n Simple_repeat Simple_repeat 2 24 0 4 1179 556 302 84 116 chr3 77865784 77866155 -81733628 - MTEa LTR MaLR -14 365 7 4 1179 30 0 0 0 chr3 77866264 77866294 -81733489 + AT_rich Low_complexity Low_complexity 1 30 0 4 1179 1385 216 52 145 chr3 77866518 77866994 -81732789 + RLTR41 LTR ERV1 1 432 -14 4 1179 1209 269 60 30 chr3 77867206 77867605 -81732178 + Lx9 LINE L1 520 930 -6678 4 1179 326 200 81 41 chr3 77867583 77867625 -81732158 + Lx9 LINE L1 1089 1133 -6475 4 1179 198 0 0 0 chr3 77867625 77867647 -81732136 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 4 1179 326 200 81 41 chr3 77867647 77867776 -81732007 + Lx9 LINE L1 1134 1267 -6341 4 1179 4330 255 62 43 chr3 77867818 77869295 -81730488 + Lx9 LINE L1 6139 7642 -2 4 1179 354 303 44 29 chr3 77869378 77869514 -81730269 + L2a LINE L2 2295 2432 -987 4 1179 619 362 17 0 chr3 77871245 77871485 -81728298 + Tigger5 DNA MER2_type 1 244 -2162 4 1179 1312 43 18 0 chr3 77871805 77871969 -81727814 + B2_Mm2 SINE B2 3 169 -26 4 1179 275 0 29 0 chr3 77872003 77872038 -81727745 + (CAA)n Simple_repeat Simple_repeat 3 38 0 4 1179 919 112 170 7 chr3 77872050 77872203 -81727580 + B2_Mm2 SINE B2 1 178 -17 4 1179 404 146 12 0 chr3 77872203 77872271 -81727512 + GA-rich Low_complexity Low_complexity 1 68 0 4 1179 1269 83 0 0 chr3 77872271 77872451 -81727332 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 4 1179 404 146 12 0 chr3 77872451 77872464 -81727319 + polypurine Low_complexity Low_complexity 69 82 0 4 1179 194 353 70 50 chr3 77873467 77873667 -81726116 + L2a LINE L2 3214 3417 -9 4 1179 220 119 17 17 chr3 77875250 77875310 -81724473 + (TTAAA)n Simple_repeat Simple_repeat 1 60 0 4 1179 31 26 0 0 chr3 77875381 77875419 -81724364 + AT_rich Low_complexity Low_complexity 1 38 0 4 1179 714 143 0 0 chr3 77875809 77875928 -81723855 + (TA)n Simple_repeat Simple_repeat 1 119 0 4 1179 315 105 0 0 chr3 77875928 77875985 -81723798 + (TG)n Simple_repeat Simple_repeat 2 58 0 4 1179 23 54 0 0 chr3 77876158 77876195 -81723588 + AT_rich Low_complexity Low_complexity 1 37 0 4 1179 309 350 93 0 chr3 77876312 77876409 -81723374 - B1F1 SINE Alu -41 108 3 4 1179 188 246 14 0 chr3 77878221 77878290 -81721493 + GA-rich Low_complexity Low_complexity 2 71 0 4 1179 1523 258 75 13 chr3 77878789 77879174 -81720609 - MTC LTR MaLR -5 416 8 4 1179 379 240 95 9 chr3 77879476 77879581 -81720202 + MTEb LTR MaLR 266 379 0 4 1179 252 0 0 0 chr3 77879834 77879862 -81719921 + (TAA)n Simple_repeat Simple_repeat 3 30 0 4 1179 2947 55 5 3 chr3 77880238 77880620 -81719163 - L1Md_F2 LINE L1 -3 6579 6197 4 1179 384 22 0 0 chr3 77882836 77882881 -81716902 + (TA)n Simple_repeat Simple_repeat 2 46 0 4 1179 320 291 26 19 chr3 77883196 77883350 -81716433 - L1MA8 LINE L1 -7 6293 6139 4 1179 346 188 94 0 chr3 77883494 77883579 -81716204 - Lx6 LINE L1 -39 7421 7329 4 1179 698 291 63 38 chr3 77883593 77884053 -81715730 - L1MA8 LINE L1 -377 5914 5446 4 1179 2021 302 43 18 chr3 77884123 77884803 -81714980 - Lx8 LINE L1 -313 7160 6464 4 1179 503 316 54 29 chr3 77884918 77885159 -81714624 + Lx8 LINE L1 6208 6454 -1019 4 1179 324 64 0 0 chr3 77886161 77886208 -81713575 + (CA)n Simple_repeat Simple_repeat 2 48 0 4 1179 1015 316 37 3 chr3 77886240 77886589 -81713194 - Lx7 LINE L1 -396 7300 6940 4 1179 298 273 149 0 chr3 77886654 77886775 -81713008 + Lx7 LINE L1 6771 6909 -787 4 1179 591 191 25 31 chr3 77886804 77886966 -81712817 + Lx5 LINE L1 5752 5912 -1138 4 1179 773 235 39 75 chr3 77886977 77887285 -81712498 - Lx7 LINE L1 0 7696 7400 4 1179 246 162 27 13 chr3 77887318 77887393 -81712390 + (TA)n Simple_repeat Simple_repeat 1 76 0 4 1179 414 172 65 75 chr3 77887422 77887529 -81712254 + Lx7 LINE L1 6860 6965 -731 4 1179 3114 231 112 22 chr3 77887612 77888392 -81711391 - Lx7 LINE L1 -585 7111 6262 4 1179 3747 75 2 6 chr3 77888393 77888889 -81710894 - L1_Mus2 LINE L1 0 6566 6073 4 1179 2934 56 0 3 chr3 77888889 77889267 -81710516 + L1_Mus2 LINE L1 5641 6017 -549 4 1179 976 203 34 25 chr3 77889267 77889505 -81710278 - L1_Mur3 LINE L1 -1219 4661 4422 4 1179 7487 217 49 99 chr3 77891388 77891646 -81708137 - L1_Mur3 LINE L1 -1445 4435 4181 4 1179 1362 123 9 0 chr3 77891646 77891857 -81707926 + Lx2 LINE L1 6781 6993 -4 4 1179 7487 217 49 99 chr3 77891857 77893238 -81706545 - L1_Mur3 LINE L1 -1700 4180 3003 4 1179 189 0 0 0 chr3 77893238 77893259 -81706524 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 4 1179 7487 217 49 99 chr3 77893259 77894299 -81705484 - L1_Mur3 LINE L1 -2878 3002 1892 4 1179 182 195 39 13 chr3 77894313 77894391 -81705392 + CT-rich Low_complexity Low_complexity 1 80 0 4 1179 523 254 15 80 chr3 77894401 77894538 -81705245 - B1_Mur3 SINE Alu -21 128 1 4 1179 984 231 30 0 chr3 77894547 77894811 -81704972 - L1_Mur3 LINE L1 -3993 1887 1616 4 1179 6390 260 48 25 chr3 77894832 77897599 -81702184 - Lx5 LINE L1 -37 7013 4175 4 1179 8478 218 44 48 chr3 77897594 77898573 -81701210 - Lx5 LINE L1 -2092 3788 2800 4 1179 734 22 11 0 chr3 77898573 77898665 -81701118 + (GTTTG)n Simple_repeat Simple_repeat 2 94 0 4 1179 8478 218 44 48 chr3 77898665 77899415 -81700368 - Lx5 LINE L1 -3081 2799 2064 4 1179 1005 83 0 0 chr3 77899415 77899560 -81700223 + (TGG)n Simple_repeat Simple_repeat 1 145 0 4 1179 8478 218 44 48 chr3 77899560 77899576 -81700207 - Lx5 LINE L1 -3817 2063 2054 4 1179 411 56 0 0 chr3 77899576 77899630 -81700153 + (TG)n Simple_repeat Simple_repeat 1 54 0 4 1179 8478 222 49 46 chr3 77899630 77900621 -81699162 - Lx5 LINE L1 -3827 2053 1044 4 1179 263 71 24 0 chr3 77900621 77900663 -81699120 + (ATTG)n Simple_repeat Simple_repeat 4 46 0 4 1179 605 282 18 7 chr3 77900663 77900776 -81699007 - Lx5 LINE L1 -6043 1043 920 4 1179 328 335 47 52 chr3 77900775 77900967 -81698816 + Lx7 LINE L1 6284 6474 -1222 4 1179 302 330 71 9 chr3 77901121 77901234 -81698549 + B4 SINE B4 4 123 -169 4 1179 297 89 0 0 chr3 77901351 77901396 -81698387 + (TCTCTG)n Simple_repeat Simple_repeat 2 46 0 4 1179 722 347 58 18 chr3 77901457 77902081 -81697702 + L1M2 LINE L1 4282 4930 -1213 4 1179 252 0 0 0 chr3 77902091 77902119 -81697664 + (TC)n Simple_repeat Simple_repeat 2 29 0 4 1179 369 0 0 0 chr3 77902119 77902159 -81697624 + (TA)n Simple_repeat Simple_repeat 2 42 0 4 1179 302 325 48 24 chr3 77903451 77903577 -81696206 - B1F1 SINE Alu -18 131 3 5 1179 276 377 41 8 chr3 77904404 77904548 -81695235 - L2c LINE L2 -210 3165 3015 5 1179 511 309 66 53 chr3 77904564 77904882 -81694901 - RMER5 LTR ERV1 -11 523 202 5 1179 529 180 182 30 chr3 77904883 77905015 -81694768 - URR1A DNA MER1_type 0 226 75 5 1179 794 67 108 0 chr3 77905044 77905164 -81694619 + L1_Mus2 LINE L1 6433 6565 -1 5 1179 228 78 0 73 chr3 77906843 77906898 -81692885 + A-rich Low_complexity Low_complexity 4 54 0 5 1179 530 203 7 0 chr3 77907422 77907565 -81692218 + (TA)n Simple_repeat Simple_repeat 1 144 0 5 1179 23 0 0 0 chr3 77907711 77907734 -81692049 + AT_rich Low_complexity Low_complexity 1 23 0 5 1179 3915 83 0 4 chr3 77908540 77909070 -81690713 - L1_Mus2 LINE L1 0 6566 6039 5 1179 31 44 0 0 chr3 77909125 77909170 -81690613 + AT_rich Low_complexity Low_complexity 1 45 0 5 1179 276 321 47 0 chr3 77909475 77909581 -81690202 + Cheshire DNA MER1_type 174 284 -2136 5 1179 2855 229 65 8 chr3 77910104 77910754 -81689029 - Lx6 LINE L1 -12 7448 6762 5 1179 509 0 16 0 chr3 77910993 77911054 -81688729 + (TAGA)n Simple_repeat Simple_repeat 3 64 0 5 1179 4479 102 2 2 chr3 77912050 77912681 -81687102 - L1_Mm LINE L1 -118 5765 5135 5 1179 2855 99 124 19 chr3 77912682 77913156 -81686627 + L1_Mus3 LINE L1 6114 6637 -1 5 1179 338 344 6 24 chr3 77914234 77914401 -81685382 - Lx8 LINE L1 -249 7224 7061 5 1179 45 45 0 0 chr3 77914440 77914506 -81685277 + AT_rich Low_complexity Low_complexity 1 66 0 5 1179 1810 231 64 2 chr3 77914507 77914944 -81684839 + Lx6 LINE L1 6759 7494 -202 5 1179 1345 84 5 16 chr3 77914964 77915158 -81684625 - B2_Mm1t SINE B2 0 193 2 5 1179 466 291 12 19 chr3 77915161 77915322 -81684461 + Lx6 LINE L1 7188 7347 -113 5 1179 1937 132 9 66 chr3 77915973 77916322 -81683461 - ORR1A4 LTR MaLR 0 329 1 5 1179 862 272 160 7 chr3 77916334 77916615 -81683168 - Lx8 LINE L1 -939 6534 6211 5 1179 23 0 0 0 chr3 77916994 77917017 -81682766 + AT_rich Low_complexity Low_complexity 1 23 0 5 1179 27 49 0 0 chr3 77917155 77917196 -81682587 + AT_rich Low_complexity Low_complexity 1 41 0 5 1179 237 108 0 0 chr3 77917226 77917263 -81682520 + (TA)n Simple_repeat Simple_repeat 1 37 0 5 1179 225 0 0 0 chr3 77918509 77918534 -81681249 + (A)n Simple_repeat Simple_repeat 1 25 0 5 1179 22 0 0 0 chr3 77918914 77918936 -81680847 + AT_rich Low_complexity Low_complexity 1 22 0 5 1179 8462 214 78 45 chr3 77919458 77922386 -81677397 - Lx5 LINE L1 -68 6982 4080 5 1179 1025 116 0 0 chr3 77922386 77922533 -81677250 + B1_Mus1 SINE Alu 2 148 0 5 1179 8462 234 96 76 chr3 77922533 77922839 -81676944 - Lx5 LINE L1 -1798 4079 3740 5 1179 2985 68 2 37 chr3 77922839 77923249 -81676534 - MTA_Mm LTR MaLR 0 396 1 5 1179 8152 65 26 2 chr3 77923249 77924321 -81675462 - MTA_Mm-int LTR MaLR 0 1098 1 5 1179 3434 35 0 0 chr3 77924321 77924717 -81675066 - MTA_Mm LTR MaLR 0 396 1 5 1179 8462 234 96 76 chr3 77924717 77926257 -81673526 - Lx5 LINE L1 -2138 3739 2065 5 1179 822 68 0 0 chr3 77926263 77926381 -81673402 + (TG)n Simple_repeat Simple_repeat 2 119 0 5 1179 4285 97 19 3 chr3 77926398 77927019 -81672764 - L1_Mus3 LINE L1 -5 6633 6003 5 1179 13107 148 28 12 chr3 77927021 77929996 -81669787 - L1Md_F LINE L1 -2519 3364 352 5 1179 655 260 42 117 chr3 77929995 77930304 -81669479 - L1VL1 LINE L1 -6131 291 6 5 1179 711 228 0 22 chr3 77930802 77930941 -81668842 + URR1B DNA MER1_type 1 136 -89 5 1179 330 291 68 29 chr3 77931110 77931282 -81668501 - RMER21B LTR ERV1 -383 564 266 5 1179 261 279 56 28 chr3 77931321 77931428 -81668355 - CYRA11_Mm Unknown Y-chromosome -336 281 172 5 1179 494 167 0 32 chr3 77931336 77931429 -81668354 + URR1B DNA MER1_type 136 225 0 5 1179 304 200 92 76 chr3 77931565 77931684 -81668099 + L1MCa LINE L1 1160 1280 -5228 5 1179 450 94 0 0 chr3 77931684 77931748 -81668035 + (GAAA)n Simple_repeat Simple_repeat 1 64 0 5 1179 317 331 62 55 chr3 77931751 77932058 -81667725 + L1M2 LINE L1 2316 2624 -4225 5 1179 5227 83 3 0 chr3 77932543 77933275 -81666508 - L1_Mm LINE L1 -3341 2542 1809 5 1179 7270 86 4 2 chr3 77933271 77934297 -81665486 + L1_Mm LINE L1 2713 3740 -2143 5 1179 6253 57 25 0 chr3 77934297 77935109 -81664674 + L1Md_F3 LINE L1 5751 6582 -2 5 1179 330 152 0 0 chr3 77935317 77935376 -81664407 + (TG)n Simple_repeat Simple_repeat 1 59 0 5 1179 459 112 0 0 chr3 77935824 77935904 -81663879 + (GA)n Simple_repeat Simple_repeat 1 80 0 5 1179 203 298 0 0 chr3 77935911 77935968 -81663815 + GA-rich Low_complexity Low_complexity 3 59 0 5 1179 1242 99 0 27 chr3 77936206 77936393 -81663390 - B2_Mm2 SINE B2 -12 183 2 5 1179 855 303 20 36 chr3 77936447 77936464 -81663319 + Lx6 LINE L1 6946 6961 -499 5 1179 3641 182 17 15 chr3 77936464 77937179 -81662604 + RMER6D LTR ERVK 5 720 0 5 1179 855 303 20 36 chr3 77937179 77937414 -81662369 + Lx6 LINE L1 6962 7194 -266 5 1179 2602 186 16 2 chr3 77937414 77937899 -81661884 + RLTR16 LTR ERVK 1 492 -13 5 1179 35 54 0 0 chr3 77938175 77938231 -81661552 + AT_rich Low_complexity Low_complexity 1 56 0 5 1179 826 43 9 9 chr3 77939218 77939334 -81660449 + (CAAAA)n Simple_repeat Simple_repeat 2 117 0 5 1179 465 34 0 0 chr3 77939974 77940033 -81659750 + (GAAA)n Simple_repeat Simple_repeat 3 61 0 5 1179 1802 137 6 47 chr3 77940158 77940479 -81659304 - RLTR28 LTR ERVL -216 308 1 5 1179 1202 213 13 0 chr3 77940513 77940743 -81659040 + RMER15 LTR ERVL 343 575 0 5 1179 1958 156 9 0 chr3 77940852 77941178 -81658605 + ORR1A4 LTR MaLR 1 329 0 5 1179 248 0 0 30 chr3 77941690 77941723 -81658060 + (TG)n Simple_repeat Simple_repeat 2 33 0 5 1179 658 271 14 0 chr3 77941749 77941893 -81657890 - B3A SINE B2 -52 146 1 5 1179 308 347 133 26 chr3 77941955 77942307 -81657476 - Zaphod DNA Tip100 -3438 593 204 5 1179 23 33 0 0 chr3 77942794 77942824 -81656959 + AT_rich Low_complexity Low_complexity 1 30 0 5 1179 339 279 88 52 chr3 77943855 77944127 -81655656 + L1MD LINE L1 4096 4377 -1769 5 1179 363 113 0 0 chr3 77944160 77944222 -81655561 + (GA)n Simple_repeat Simple_repeat 1 62 0 5 1179 7716 125 14 4 chr3 77944422 77945861 -81653922 - Lx3C LINE L1 -270 6706 5309 5 1179 18703 151 35 11 chr3 77945854 77949803 -81649980 - Lx3C LINE L1 -1216 4670 691 5 1179 415 138 0 0 chr3 77949916 77949981 -81649802 - Lx3C LINE L1 -6225 759 695 5 1179 490 331 35 23 chr3 77950234 77950407 -81649376 + Lx8 LINE L1 6860 7034 -439 5 1179 1071 237 0 0 chr3 77950435 77950642 -81649141 - MERVK26-int LTR ERVK -4137 2782 2576 5 1179 201 162 0 0 chr3 77950719 77950756 -81649027 + T-rich Low_complexity Low_complexity 1 37 0 5 1179 3101 242 46 1 chr3 77950760 77951452 -81648331 - MERVK26-int LTR ERVK -4972 1947 1225 5 1179 21 0 0 0 chr3 77951691 77951712 -81648071 + AT_rich Low_complexity Low_complexity 1 21 0 5 1179 24 53 0 0 chr3 77951897 77951935 -81647848 + AT_rich Low_complexity Low_complexity 1 38 0 5 1179 292 211 28 0 chr3 77952058 77952129 -81647654 + (CAGAGA)n Simple_repeat Simple_repeat 6 78 0 5 1179 412 43 0 92 chr3 77952442 77952518 -81647265 - L1Md_F3 LINE L1 0 6584 6516 5 1179 3128 69 38 12 chr3 77952584 77953032 -81646751 - L1Md_F2 LINE L1 0 6582 6138 5 1179 258 235 0 0 chr3 77953257 77953338 -81646445 + GA-rich Low_complexity Low_complexity 4 84 0 5 1179 381 327 126 25 chr3 77953592 77953909 -81645874 + L1MEc LINE L1 1796 2144 -4256 5 1179 205 127 0 98 chr3 77954153 77954214 -81645569 + A-rich Low_complexity Low_complexity 5 59 0 5 1179 579 271 71 39 chr3 77954499 77954694 -81645089 + B3A SINE B2 9 215 -1 5 1179 28 61 0 0 chr3 77954800 77954849 -81644934 + AT_rich Low_complexity Low_complexity 1 49 0 5 1179 278 276 133 26 chr3 77955384 77955655 -81644128 + L1MEc LINE L1 4479 4778 -1541 5 1179 4488 46 3 21 chr3 77956090 77956665 -81643118 + L1Md_F2 LINE L1 6018 6582 0 5 1179 222 207 0 0 chr3 77956781 77956839 -81642944 + GA-rich Low_complexity Low_complexity 2 59 0 5 1179 433 290 197 32 chr3 77957196 77957816 -81641967 - L1MC3 LINE L1 -217 7568 6847 5 1179 298 321 52 7 chr3 77958791 77958926 -81640857 + B1F1 SINE Alu 1 141 -8 5 1179 573 133 0 0 chr3 77958992 77959090 -81640693 + (TC)n Simple_repeat Simple_repeat 1 98 0 5 1179 285 98 0 0 chr3 77959464 77959505 -81640278 + (ATG)n Simple_repeat Simple_repeat 2 42 0 5 1179 362 221 421 0 chr3 77959506 77959601 -81640182 + B1_Mus1 SINE Alu 2 136 -12 5 1179 356 21 0 40 chr3 77959601 77959651 -81640132 + (CAAAA)n Simple_repeat Simple_repeat 3 50 0 5 1179 260 0 0 54 chr3 77959662 77959699 -81640084 + (CAGAGA)n Simple_repeat Simple_repeat 2 36 0 5 1179 493 188 24 0 chr3 77959700 77959785 -81639998 + B1_Mur3 SINE Alu 47 133 -16 5 1179 1054 123 6 11 chr3 77959792 77959973 -81639810 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 5 1179 251 299 0 0 chr3 77963517 77963584 -81636199 + ID4_ SINE ID 3 69 -14 5 1179 368 324 23 17 chr3 77963615 77963788 -81635995 + GA-rich Low_complexity Low_complexity 3 176 0 5 1179 523 242 0 0 chr3 77964566 77964657 -81635126 - PB1D7 SINE Alu -9 111 21 5 1179 219 368 11 22 chr3 77964588 77964677 -81635106 - B4A SINE B4 -119 173 86 5 1179 23 33 0 0 chr3 77965324 77965354 -81634429 + AT_rich Low_complexity Low_complexity 1 30 0 5 1179 1327 274 57 10 chr3 77966311 77966694 -81633089 + MTD LTR MaLR 18 418 -1 5 1179 589 204 192 23 chr3 77966973 77967239 -81632544 - Lx9 LINE L1 -34 7610 7300 5 1179 315 348 89 65 chr3 77967252 77967498 -81632285 - L1MC2 LINE L1 -98 6246 5995 5 1179 225 348 45 0 chr3 77967566 77967678 -81632105 - L1MC2 LINE L1 -1893 5892 5776 5 1179 900 28 0 0 chr3 77967710 77967817 -81631966 + (TTTC)n Simple_repeat Simple_repeat 1 107 0 5 1179 1717 292 57 33 chr3 77967881 77968498 -81631285 - Lx5 LINE L1 -87 7373 6461 5 1179 827 165 0 21 chr3 77968535 77968683 -81631100 + B1_Mur3 SINE Alu 4 142 -8 5 1179 824 158 7 0 chr3 77968685 77968837 -81630946 + GA-rich Low_complexity Low_complexity 3 155 0 5 1179 649 312 68 38 chr3 77968879 77969349 -81630434 - L1MC2 LINE L1 -591 5753 5270 5 1179 334 252 112 20 chr3 77970699 77970950 -81628833 + Charlie2b DNA MER1_type 2490 2763 -19 5 1179 824 196 0 0 chr3 77971945 77972088 -81627695 + B1_Mus1 SINE Alu 6 148 0 5 1179 238 232 56 28 chr3 77972267 77972338 -81627445 + ID4 SINE ID 1 73 -10 5 1179 289 393 18 6 chr3 77973128 77973292 -81626491 - MLT1F-int LTR MaLR -98 1391 1226 6 1179 3799 47 0 0 chr3 77974012 77974477 -81625306 - L1Md_T LINE L1 -204 6378 5914 6 1179 1632 58 0 0 chr3 77974477 77974683 -81625100 + L1Md_T LINE L1 6376 6581 -1 6 1179 321 312 62 31 chr3 77974991 77975153 -81624630 + Charlie4a DNA MER1_type 81 247 -261 6 1179 575 274 39 28 chr3 77975258 77975438 -81624345 + B3 SINE B2 27 208 -8 6 1179 23 54 0 0 chr3 77975438 77975475 -81624308 + AT_rich Low_complexity Low_complexity 1 37 0 6 1179 27 49 0 0 chr3 77975911 77975952 -81623831 + AT_rich Low_complexity Low_complexity 1 41 0 6 1179 203 224 32 65 chr3 77976763 77976825 -81622958 - L3 LINE CR1 -3402 1087 1028 6 1179 27 29 0 0 chr3 77976886 77976920 -81622863 + AT_rich Low_complexity Low_complexity 1 34 0 6 1179 396 0 0 0 chr3 77977399 77977443 -81622340 + (TG)n Simple_repeat Simple_repeat 1 44 0 6 1179 2545 170 11 17 chr3 77977573 77978035 -81621748 - RMER6B LTR ERVK -2 459 1 6 1179 3927 148 32 1 chr3 77978659 77979317 -81620466 + RLTR33 LTR ERVK 1 678 0 6 1179 49 18 0 0 chr3 77979495 77979551 -81620232 + AT_rich Low_complexity Low_complexity 1 56 0 6 1179 23 33 0 0 chr3 77979626 77979656 -81620127 + AT_rich Low_complexity Low_complexity 1 30 0 6 1179 299 290 0 61 chr3 77980850 77980964 -81618819 - Lx8 LINE L1 -523 6950 6844 6 1179 1434 198 126 31 chr3 77981900 77982250 -81617533 + ORR1C2 LTR MaLR 2 384 0 6 1179 288 317 0 88 chr3 77982804 77982918 -81616865 + PB1 SINE Alu 22 125 -2 6 1179 21 0 0 0 chr3 77983053 77983074 -81616709 + AT_rich Low_complexity Low_complexity 1 21 0 6 1179 253 157 75 12 chr3 77983107 77983268 -81616515 + (TTATA)n Simple_repeat Simple_repeat 5 175 0 6 1179 1072 287 100 11 chr3 77983759 77984129 -81615654 - Lx8 LINE L1 -807 6666 6264 6 1179 285 300 70 18 chr3 77984127 77984276 -81615507 + Lx8 LINE L1 7039 7209 -264 6 1179 390 335 38 12 chr3 77985004 77985164 -81614619 + MTD LTR MaLR 3 166 -253 6 1179 1177 46 0 19 chr3 77985631 77985785 -81613998 - Lx LINE L1 -760 5894 5744 6 1179 3838 76 36 2 chr3 77985853 77986383 -81613400 - L1_Mus1 LINE L1 0 6567 6020 6 1179 2506 49 0 0 chr3 77986404 77986711 -81613072 + L1Md_F2 LINE L1 5280 5586 -297 6 1179 8089 52 1 0 chr3 77986711 77987706 -81612077 + L1Md_F2 LINE L1 5587 6582 0 6 147 495 87 0 0 chr3 77987792 77987861 -81611922 + (GA)n Simple_repeat Simple_repeat 2 70 0 6 1180 202 150 0 24 chr3 77987861 77987902 -81611881 + (CAAA)n Simple_repeat Simple_repeat 3 42 0 6 1180 5763 134 14 1 chr3 77987990 77989429 -81610354 - L1_Mus4 LINE L1 -210 6426 4963 6 1180 4834 144 40 6 chr3 77989445 77990236 -81609547 - Lx4A LINE L1 -4 7054 6237 6 1180 2744 111 12 16 chr3 77990247 77990677 -81609106 - L1_Mur2 LINE L1 -1971 3906 3479 6 1180 1011 161 0 0 chr3 77990677 77990857 -81608926 + CT-rich Low_complexity Low_complexity 1 180 0 6 1180 17028 164 78 18 chr3 77990860 77995236 -81604547 - L1Md_F2 LINE L1 0 6582 1872 6 1180 3950 61 0 2 chr3 77995236 77995728 -81604055 - L1_Mus1 LINE L1 0 6567 6077 6 1180 17028 198 56 50 chr3 77995728 77997134 -81602649 - L1Md_F2 LINE L1 -4012 1871 528 6 1180 212 186 0 23 chr3 77997326 77997370 -81602413 + T-rich Low_complexity Low_complexity 2 44 0 6 1180 22 80 0 0 chr3 77997502 77997552 -81602231 + AT_rich Low_complexity Low_complexity 1 50 0 6 1180 183 325 82 44 chr3 77998384 77998542 -81601241 - L3 LINE CR1 -193 4296 4133 6 1180 1293 282 47 40 chr3 77998542 77998992 -81600791 - Lx7 LINE L1 -635 7061 6609 6 1180 1043 200 46 19 chr3 77998961 77999221 -81600562 + L1_Mur3 LINE L1 4326 4592 -1288 6 1180 447 106 28 19 chr3 77999235 77999341 -81600442 + (CAGAGA)n Simple_repeat Simple_repeat 2 108 0 6 1180 344 119 0 0 chr3 77999369 77999428 -81600355 + L1_Mur3 LINE L1 4631 4689 -1191 6 1180 2024 139 26 3 chr3 77999651 77999997 -81599786 + ETnERV3-int LTR ERVK 4854 5207 -601 6 1180 1004 118 12 24 chr3 78000000 78000165 -81599618 + RLTR45-int LTR ERVK 5909 6071 -1173 1 1180 1656 126 12 0 chr3 78000179 78000425 -81599358 + ETnERV3-int LTR ERVK 5529 5777 -31 2 1180 4963 94 109 20 chr3 78000443 78001268 -81598515 + RLTR13D6 LTR ERVK 1 875 -27 2 1180 237 267 103 56 chr3 78001270 78001377 -81598406 + PB1D9 SINE Alu 3 114 -6 3 1180 1143 103 68 6 chr3 78001392 78001568 -81598215 + B2_Mm2 SINE B2 2 188 -7 4 1180 258 314 35 42 chr3 78001666 78001809 -81597974 + MLT1D LTR MaLR 61 202 -303 5 1180 412 272 69 29 chr3 78001868 78002042 -81597741 - RMER5 LTR ERV1 0 534 354 6 1180 522 0 0 0 chr3 78003776 78003834 -81595949 + (CA)n Simple_repeat Simple_repeat 1 58 0 7 1180 230 371 0 9 chr3 78004254 78004360 -81595423 + GA-rich Low_complexity Low_complexity 3 107 0 8 1180 294 29 0 0 chr3 78004420 78004455 -81595328 + (CA)n Simple_repeat Simple_repeat 2 36 0 9 1180 337 35 70 0 chr3 78004460 78004517 -81595266 + (CAAAA)n Simple_repeat Simple_repeat 5 65 0 1 1180 842 351 22 11 chr3 78005552 78005820 -81593963 - B4A SINE B4 -20 272 2 1 1180 222 37 0 0 chr3 78006775 78006802 -81592981 + (TCTA)n Simple_repeat Simple_repeat 4 30 0 1 1180 240 307 13 0 chr3 78006838 78006913 -81592870 - L1M3 LINE L1 -720 5463 5388 1 1180 593 270 73 18 chr3 78007013 78007285 -81592498 - L1M3 LINE L1 -840 5300 5014 1 1180 443 242 90 10 chr3 78007422 78007522 -81592261 + PB1D10 SINE Alu 10 117 0 1 1180 7449 85 7 5 chr3 78007537 78008567 -81591216 + L1Md_F2 LINE L1 4554 5585 -298 1 1180 7079 80 18 2 chr3 78008568 78009537 -81590246 + L1Md_F2 LINE L1 5587 6570 -12 1 1180 528 343 122 34 chr3 78010125 78010602 -81589181 + L1MD1 LINE L1 5495 6013 -229 1 1180 29 0 0 0 chr3 78010748 78010777 -81589006 + AT_rich Low_complexity Low_complexity 1 29 0 1 1180 878 294 46 21 chr3 78010813 78011140 -81588643 + Lx8 LINE L1 7133 7467 -6 1 1180 339 344 58 58 chr3 78015605 78015812 -81583971 + B4A SINE B4 1 207 -85 1 1180 1999 212 65 42 chr3 78015760 78016281 -81583502 - RLTR20B3 LTR ERVK -44 533 1 2 1180 2370 226 10 12 chr3 78016288 78016772 -81583011 - RLTR18B LTR ERVK -27 485 3 2 1180 1210 228 30 40 chr3 78016873 78017174 -81582609 + Lx9 LINE L1 6949 7246 -398 2 1180 324 0 0 0 chr3 78017608 78017644 -81582139 + (TG)n Simple_repeat Simple_repeat 1 36 0 2 1180 396 150 0 0 chr3 78017663 78017743 -81582040 + (CAGAGA)n Simple_repeat Simple_repeat 3 82 0 2 1180 1031 307 16 50 chr3 78018220 78018601 -81581182 - MTEb LTR MaLR -11 368 1 2 1180 306 53 63 38 chr3 78019351 78019430 -81580353 + T-rich Low_complexity Low_complexity 1 81 0 2 1180 415 271 63 14 chr3 78019430 78019572 -81580211 - B1F SINE Alu 0 149 1 2 1180 204 45 21 62 chr3 78019753 78019801 -81579982 + (CAAAAA)n Simple_repeat Simple_repeat 1 46 0 2 1180 310 309 19 9 chr3 78019945 78020053 -81579730 - L1M2 LINE L1 -3834 2309 2201 2 1180 257 170 65 29 chr3 78020053 78020192 -81579591 + (TA)n Simple_repeat Simple_repeat 2 145 0 3 1180 566 0 0 0 chr3 78020399 78020469 -81579314 - L1Md_T LINE L1 0 6582 6513 3 1180 29 0 0 0 chr3 78020605 78020634 -81579149 + AT_rich Low_complexity Low_complexity 1 29 0 3 1180 21 0 0 0 chr3 78020960 78020981 -81578802 + AT_rich Low_complexity Low_complexity 1 21 0 3 1180 205 337 230 17 chr3 78021029 78021369 -81578414 + L2a LINE L2 2713 3124 -302 3 1180 2685 34 3 0 chr3 78021407 78021729 -81578054 - L1Md_F2 LINE L1 -13 6569 6247 3 1180 287 0 0 0 chr3 78021729 78021764 -81578019 + L1Md_F3 LINE L1 6027 6061 -523 3 1180 189 219 0 47 chr3 78022339 78022382 -81577401 - MIR SINE MIR -136 126 86 3 1180 189 0 0 0 chr3 78022863 78022884 -81576899 + (A)n Simple_repeat Simple_repeat 1 21 0 3 1180 516 255 102 69 chr3 78025655 78026059 -81573724 - L1MA9 LINE L1 -52 6260 5844 3 1180 872 251 304 8 chr3 78026269 78026782 -81573001 + Lx7 LINE L1 7031 7695 -1 4 1180 2347 63 0 0 chr3 78027152 78027454 -81572329 + L1Md_A LINE L1 6280 6581 -1 4 1180 7374 46 1 4 chr3 78028313 78029229 -81570554 + L1Md_F2 LINE L1 5670 6582 0 4 1180 1165 316 75 1 chr3 78029776 78029966 -81569817 - RLTR40 LTR ERVK -243 574 307 4 1180 471 60 0 0 chr3 78029966 78030033 -81569750 + (TCTCTG)n Simple_repeat Simple_repeat 2 68 0 4 1180 417 20 0 0 chr3 78030035 78030085 -81569698 + (CA)n Simple_repeat Simple_repeat 1 50 0 4 1180 1165 238 25 16 chr3 78030085 78030386 -81569397 - RLTR40 LTR ERVK -511 306 5 4 1180 489 302 18 24 chr3 78030598 78030764 -81569019 - MER2B DNA MER2_type -7 329 165 4 1180 7626 171 22 8 chr3 78031037 78032434 -81567349 + Lx3C LINE L1 5552 6972 -4 4 1180 423 0 0 0 chr3 78032615 78032662 -81567121 + (TG)n Simple_repeat Simple_repeat 2 48 0 4 1180 360 0 0 0 chr3 78032735 78032775 -81567008 + (TAAA)n Simple_repeat Simple_repeat 1 40 0 4 1180 609 250 39 59 chr3 78032807 78033011 -81566772 + Lx8 LINE L1 6339 6538 -935 5 1180 256 253 13 0 chr3 78033011 78033161 -81566622 + GA-rich Low_complexity Low_complexity 1 152 0 5 1180 377 294 20 105 chr3 78034758 78034910 -81564873 + MLT1D LTR MaLR 334 472 -33 5 1180 225 256 74 104 chr3 78035432 78035567 -81564216 + L1MCb LINE L1 683 813 -5232 5 1180 1419 105 14 5 chr3 78035685 78035906 -81563877 - L1_Mus3 LINE L1 -2 6636 6414 5 1180 254 286 28 101 chr3 78036615 78036724 -81563059 - MLT1A1 LTR MaLR -305 103 3 5 1180 22 80 0 0 chr3 78037282 78037332 -81562451 + AT_rich Low_complexity Low_complexity 1 50 0 5 1180 26 30 0 0 chr3 78037990 78038023 -81561760 + AT_rich Low_complexity Low_complexity 1 33 0 5 1180 239 258 0 0 chr3 78039891 78039953 -81559830 + A-rich Low_complexity Low_complexity 1 62 0 5 1180 420 55 0 0 chr3 78040378 78040433 -81559350 + (TTTTC)n Simple_repeat Simple_repeat 2 56 0 5 1180 461 331 5 49 chr3 78041803 78041987 -81557796 - B4A SINE B4 -112 180 5 6 1180 1876 93 30 4 chr3 78042005 78042274 -81557509 - ORR1A2 LTR MaLR -51 276 1 6 1180 342 0 0 0 chr3 78042532 78042570 -81557213 + (TG)n Simple_repeat Simple_repeat 2 39 0 6 1180 902 265 121 21 chr3 78042580 78042869 -81556914 - Lx2B LINE L1 -27 6973 6656 6 1180 1935 142 19 0 chr3 78042865 78043189 -81556594 - L1_Mur2 LINE L1 -1332 4545 4216 6 1180 1745 164 2 68 chr3 78043183 78043577 -81556206 + MusHAL1 LINE L1 1771 2138 -574 6 1180 828 96 0 0 chr3 78043571 78043686 -81556097 + L1_Mur2 LINE L1 4117 4231 -1646 6 1180 846 94 8 0 chr3 78043691 78043819 -81555964 + ORR1A4 LTR MaLR 198 326 -3 6 1180 6182 40 1 0 chr3 78043832 78044578 -81555205 + L1Md_T LINE L1 5836 6582 0 6 1180 849 291 121 26 chr3 78044726 78045214 -81554569 - L1M2 LINE L1 -738 5562 5006 6 1180 2612 100 260 15 chr3 78045214 78045683 -81554100 - MT2B2 LTR ERVL 0 584 1 7 1180 849 290 122 30 chr3 78045683 78045941 -81553842 - L1M2 LINE L1 -1138 5005 4739 6 1180 480 77 0 0 chr3 78045977 78046042 -81553741 + (TG)n Simple_repeat Simple_repeat 2 66 0 7 1180 2689 133 43 2 chr3 78046261 78046707 -81553076 - L1_Mus4 LINE L1 -4 6632 6169 7 1180 7421 79 3 1 chr3 78046799 78047832 -81551951 - L1_Mus2 LINE L1 -1 6565 5531 7 1180 3833 114 2 5 chr3 78047831 78048406 -81551377 + L1_Mm LINE L1 2091 2663 -3220 7 1180 21912 33 125 61 chr3 78048399 78049767 -81550016 - L1Md_T LINE L1 0 6582 5297 7 1180 969 45 0 0 chr3 78049767 78049901 -81549882 - L1Md_T LINE L1 0 6582 6449 7 1180 21912 34 209 111 chr3 78049901 78054194 -81545589 - L1Md_T LINE L1 -587 5296 413 7 1180 39 0 0 0 chr3 78054253 78054292 -81545491 + AT_rich Low_complexity Low_complexity 1 39 0 7 1180 1864 71 11 66 chr3 78054298 78054585 -81545198 - L1_Mus2 LINE L1 -1 6565 6295 7 1180 1018 115 0 26 chr3 78055807 78055959 -81543824 + B1_Mus1 SINE Alu 1 148 0 7 1180 348 324 45 36 chr3 78056100 78056212 -81543571 - B3A SINE B2 -84 114 2 8 1180 22 35 0 0 chr3 78056215 78056244 -81543539 + AT_rich Low_complexity Low_complexity 1 29 0 8 1180 25 51 0 0 chr3 78057098 78057137 -81542646 + AT_rich Low_complexity Low_complexity 1 39 0 8 1180 4770 171 59 24 chr3 78057270 78058314 -81541469 - L1_Mur1 LINE L1 -683 5194 4114 8 1180 5225 189 54 75 chr3 78058314 78059863 -81539920 - ORR1B1-int LTR MaLR 0 1963 8 8 1180 248 297 95 0 chr3 78059831 78059905 -81539878 - B1_Mur3 SINE Alu -37 112 32 8 1180 686 220 227 9 chr3 78059930 78059988 -81539795 - MT2B LTR ERVL -331 270 200 8 1180 558 0 0 0 chr3 78059988 78060050 -81539733 + (TC)n Simple_repeat Simple_repeat 1 62 0 8 1180 686 220 227 9 chr3 78060050 78060211 -81539572 - MT2B LTR ERVL -402 199 4 8 1180 7072 222 68 17 chr3 78060223 78061173 -81538610 - L1_Mur1 LINE L1 -1776 4110 3121 8 1180 270 0 0 0 chr3 78061173 78061203 -81538580 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 8 1180 7072 222 68 17 chr3 78061203 78061905 -81537878 - L1_Mur1 LINE L1 -2766 3120 2362 8 1180 2652 167 80 12 chr3 78061905 78062420 -81537363 + RLTR31_Mur LTR ERVK 4 553 0 8 1180 7072 222 68 17 chr3 78062420 78062660 -81537123 - L1_Mur1 LINE L1 -3525 2361 2120 8 1180 2090 112 15 58 chr3 78062660 78063002 -81536781 + ORR1A2 LTR MaLR 1 327 0 9 1180 7072 222 68 17 chr3 78063002 78063043 -81536740 - L1_Mur1 LINE L1 -3767 2119 2078 8 1180 2510 146 0 26 chr3 78063635 78064064 -81535719 - Lx3B LINE L1 -4 6969 6552 9 1180 250 337 20 0 chr3 78064068 78064166 -81535617 + MARNA DNA Mariner 439 538 -48 9 1180 202 29 28 28 chr3 78064581 78064617 -81535166 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 9 1180 1595 110 8 4 chr3 78064622 78064868 -81534915 - L1_Mus3 LINE L1 -32 6606 6360 9 1180 903 59 0 0 chr3 78064866 78064984 -81534799 + L1_Mus3 LINE L1 6263 6380 -258 9 1180 1414 206 128 25 chr3 78065335 78065694 -81534089 + RMER17B LTR ERVK 1 401 -557 9 1180 185 0 40 0 chr3 78065694 78065719 -81534064 + (TTCTC)n Simple_repeat Simple_repeat 1 26 0 9 1180 1414 247 80 50 chr3 78065719 78065835 -81533948 + RMER17B LTR ERVK 361 481 -328 9 1180 1335 85 0 0 chr3 78065835 78066235 -81533548 + (TTC)n Simple_repeat Simple_repeat 1 400 0 9 1180 428 272 34 108 chr3 78066235 78066246 -81533537 + RMER13B LTR ERVK 395 405 -503 9 1180 609 14 0 0 chr3 78066246 78066316 -81533467 + (TC)n Simple_repeat Simple_repeat 1 70 0 9 1180 428 277 43 111 chr3 78066316 78066709 -81533074 + RMER13B LTR ERVK 406 894 -14 9 1180 324 0 0 0 chr3 78066946 78066982 -81532801 + (A)n Simple_repeat Simple_repeat 1 36 0 1 1180 21 0 0 0 chr3 78067196 78067217 -81532566 + AT_rich Low_complexity Low_complexity 1 21 0 1 1180 303 71 0 0 chr3 78067366 78067408 -81532375 + (TG)n Simple_repeat Simple_repeat 1 42 0 1 1180 1470 180 17 24 chr3 78068698 78069026 -81530757 + ORR1B2 LTR MaLR 4 367 0 1 1180 519 309 73 8 chr3 78069245 78069490 -81530293 - L1MB1 LINE L1 0 6168 5908 1 1180 419 200 113 3 chr3 78069672 78069855 -81529928 - L1M4c LINE L1 -3943 2441 2244 1 1180 260 206 71 29 chr3 78069938 78070008 -81529775 + B3A SINE B2 2 74 -124 1 1180 439 362 61 30 chr3 78070325 78070687 -81529096 - L1M4c LINE L1 -4551 1833 1461 1 1180 233 241 0 25 chr3 78070829 78070910 -81528873 + (CATA)n Simple_repeat Simple_repeat 4 82 0 1 1180 405 314 207 46 chr3 78070982 78071308 -81528475 - ORR1E LTR MaLR 0 379 1 1 1180 1025 317 69 14 chr3 78071308 78071647 -81528136 - MTE-int LTR MaLR -53 1527 1170 1 1180 424 372 6 6 chr3 78073007 78073172 -81526611 + MER44D DNA MER2_type 11 175 -530 1 1180 1496 230 72 31 chr3 78073412 78073859 -81525924 - Lx2B LINE L1 -91 6909 6150 1 1180 730 226 0 6 chr3 78073871 78074027 -81525756 + L1_Mur1 LINE L1 5426 5580 -306 1 1180 4354 215 45 13 chr3 78074334 78074954 -81524829 + Lx7 LINE L1 4099 4729 -1151 1 1180 456 19 0 0 chr3 78074954 78075007 -81524776 + (CA)n Simple_repeat Simple_repeat 2 54 0 1 1180 4354 215 45 13 chr3 78075007 78075532 -81524251 + Lx7 LINE L1 4730 5279 -601 1 1180 14883 174 94 13 chr3 78075515 78078590 -81521193 + L1_Mur1 LINE L1 2259 5589 -297 1 1180 7160 71 39 2 chr3 78078590 78079551 -81520232 + L1Md_F2 LINE L1 5587 6582 0 1 1180 14883 174 94 13 chr3 78079551 78079595 -81520188 + L1_Mur1 LINE L1 5590 5630 -256 1 1180 10816 157 31 2 chr3 78079569 78082394 -81517389 + L1_Mus4 LINE L1 3714 6635 -1 1 1180 1811 253 80 34 chr3 78082435 78083074 -81516709 + Lx7 LINE L1 5593 6260 -1436 1 1180 22 35 0 0 chr3 78083169 78083198 -81516585 + AT_rich Low_complexity Low_complexity 1 29 0 1 1180 208 283 0 32 chr3 78083645 78083707 -81516076 + GA-rich Low_complexity Low_complexity 3 62 0 1 1180 246 128 0 0 chr3 78083708 78083747 -81516036 + (GGA)n Simple_repeat Simple_repeat 1 39 0 1 1180 31 0 0 0 chr3 78083958 78083989 -81515794 + AT_rich Low_complexity Low_complexity 1 31 0 1 1180 308 322 39 28 chr3 78084436 78084592 -81515191 + L1MD LINE L1 2149 2308 -3838 1 1180 870 54 0 0 chr3 78084592 78084704 -81515079 + (GGGA)n Simple_repeat Simple_repeat 4 115 0 1 1180 308 322 39 28 chr3 78084704 78084729 -81515054 + L1MD LINE L1 2309 2332 -3814 1 1180 1620 0 0 0 chr3 78084746 78084926 -81514857 + (GGGAA)n Simple_repeat Simple_repeat 1 180 0 1 1180 226 365 10 10 chr3 78085330 78085427 -81514356 + B2_Mm2 SINE B2 1 97 -98 1 1180 243 237 68 0 chr3 78085399 78085458 -81514325 + B3A SINE B2 106 168 -30 1 1180 1378 233 88 36 chr3 78085724 78085844 -81513939 + ORR1C2 LTR MaLR 1 128 -256 1 1180 3514 13 2 0 chr3 78085844 78086239 -81513544 - MTA_Mm LTR MaLR 0 396 1 1 1180 9630 16 0 1 chr3 78086239 78087338 -81512445 - MTA_Mm-int LTR MaLR 0 1098 1 1 1180 3514 13 2 0 chr3 78087338 78087733 -81512050 - MTA_Mm LTR MaLR 0 396 1 1 1180 1378 233 88 36 chr3 78087733 78087975 -81511808 + ORR1C2 LTR MaLR 129 382 -2 1 1180 933 91 11 11 chr3 78088910 78089088 -81510695 + (TAGA)n Simple_repeat Simple_repeat 3 180 0 1 1180 627 311 96 73 chr3 78089765 78090119 -81509664 - MTEb LTR MaLR 0 379 18 1 1180 252 328 123 29 chr3 78090719 78090857 -81508926 - MLT1K LTR MaLR -176 419 269 1 1180 243 331 103 16 chr3 78092608 78092734 -81507049 + B1F1 SINE Alu 3 139 -10 1 1180 384 346 0 0 chr3 78092744 78092848 -81506935 + B4A SINE B4 10 113 -179 1 1180 372 43 0 0 chr3 78092901 78092947 -81506836 + (TA)n Simple_repeat Simple_repeat 1 46 0 1 1180 225 299 117 19 chr3 78092997 78093253 -81506530 + L1M5 LINE L1 2376 2656 -3490 1 1180 551 254 7 43 chr3 78093443 78093583 -81506200 - B1_Mur1 SINE Alu 0 149 15 1 1180 1134 48 7 7 chr3 78094224 78094370 -81505413 - B1_Mus1 SINE Alu -1 147 2 1 1180 650 236 16 12 chr3 78094384 78094557 -81505226 - MTE2a LTR MaLR 0 379 212 1 1180 499 312 139 61 chr3 78094736 78095095 -81504688 + MLT2D LTR ERVL 7 410 -4 1 1180 192 77 0 0 chr3 78095164 78095190 -81504593 + (GAAAA)n Simple_repeat Simple_repeat 2 27 0 1 1180 239 165 22 45 chr3 78096225 78096314 -81503469 + (TTATA)n Simple_repeat Simple_repeat 5 91 0 1 1180 722 274 21 48 chr3 78096333 78096521 -81503262 - B3 SINE B2 -33 183 1 1 1180 2527 141 60 48 chr3 78097753 78098186 -81501597 - RLTR11A2 LTR ERVK 0 527 98 1 1180 387 0 0 0 chr3 78098186 78098229 -81501554 + (TC)n Simple_repeat Simple_repeat 2 44 0 1 1180 498 109 0 0 chr3 78098229 78098320 -81501463 + (TG)n Simple_repeat Simple_repeat 1 92 0 1 1180 2527 141 60 48 chr3 78098320 78098406 -81501377 - RLTR11A2 LTR ERVK -430 97 2 1 1180 507 33 0 0 chr3 78099350 78099411 -81500372 + (CA)n Simple_repeat Simple_repeat 2 62 0 1 1180 198 0 0 0 chr3 78099411 78099432 -81500351 + (GA)n Simple_repeat Simple_repeat 2 23 0 1 1180 211 214 0 0 chr3 78099462 78099504 -81500279 + (TATATG)n Simple_repeat Simple_repeat 6 47 0 1 1180 748 233 133 10 chr3 78099504 78099699 -81500084 - MT2A LTR ERVL -153 448 103 1 1180 5277 212 59 7 chr3 78100261 78100759 -81499024 + Lx5 LINE L1 5908 6439 -611 1 1180 369 0 0 0 chr3 78100759 78100800 -81498983 + (GA)n Simple_repeat Simple_repeat 1 41 0 1 1180 5277 212 59 7 chr3 78100800 78101378 -81498405 + Lx5 LINE L1 6440 7041 -9 1 1180 235 87 43 21 chr3 78101391 78101438 -81498345 + A-rich Low_complexity Low_complexity 2 49 0 1 1180 334 295 35 2 chr3 78102523 78102647 -81497136 - MLT1F2 LTR MaLR -51 509 414 1 1180 328 302 19 9 chr3 78102776 78102883 -81496900 - Tigger5 DNA MER2_type -2 2404 2297 1 1180 262 339 102 63 chr3 78102874 78103079 -81496704 - Tigger5 DNA MER2_type -2176 230 18 1 1180 216 0 0 0 chr3 78104104 78104128 -81495655 + (TG)n Simple_repeat Simple_repeat 1 24 0 1 1180 993 112 0 0 chr3 78104128 78104368 -81495415 + (GA)n Simple_repeat Simple_repeat 1 240 0 1 1180 6283 109 18 8 chr3 78104413 78105357 -81494426 - Lx2 LINE L1 -273 6724 5772 1 1180 1768 131 4 0 chr3 78105357 78105631 -81494152 + Lx2 LINE L1 6723 6997 0 1 1180 719 318 87 65 chr3 78105737 78106143 -81493640 + L1_Mur3 LINE L1 2575 3013 -3130 1 1180 3601 72 4 15 chr3 78106143 78106623 -81493160 + MT2C_Mm LTR ERVL 1 475 0 1 1180 719 318 87 65 chr3 78106623 78106706 -81493077 + L1_Mur3 LINE L1 3014 3092 -3051 1 1180 1072 97 0 7 chr3 78106706 78106852 -81492931 + B1_Mus1 SINE Alu 1 145 -3 1 1180 726 300 72 68 chr3 78106852 78107898 -81491885 + L1_Mur3 LINE L1 3093 4122 -2018 1 1180 845 296 42 57 chr3 78107932 78108265 -81491518 + MTE2a LTR MaLR 52 379 0 1 1180 427 357 102 19 chr3 78108267 78108808 -81490975 + L1_Mur3 LINE L1 4972 5557 -740 1 1180 1305 248 149 11 chr3 78108809 78109164 -81490619 + MTD LTR MaLR 2 405 -14 1 1180 230 233 50 0 chr3 78109186 78109246 -81490537 + MamRep38 DNA hAT 203 265 -30 1 1180 277 355 132 4 chr3 78109246 78109481 -81490302 + L1_Mur3 LINE L1 5619 5883 -417 1 1180 603 204 154 7 chr3 78109555 78109698 -81490085 - B3 SINE B2 -5 211 48 1 1180 23 0 0 0 chr3 78109788 78109811 -81489972 + AT_rich Low_complexity Low_complexity 1 23 0 1 1180 192 125 0 0 chr3 78109829 78109861 -81489922 + (CA)n Simple_repeat Simple_repeat 1 32 0 1 1180 2091 137 58 30 chr3 78111354 78111752 -81488031 + RLTR9E LTR ERVK 1 409 0 1 1180 664 24 48 0 chr3 78111872 78111956 -81487827 - RLTR10B LTR ERVK -203 89 2 1 1180 332 24 0 0 chr3 78111961 78112003 -81487780 - RLTR10B LTR ERVK -250 42 1 1 1180 29 28 0 0 chr3 78112158 78112194 -81487589 + AT_rich Low_complexity Low_complexity 1 36 0 1 1180 326 282 28 21 chr3 78113511 78113656 -81486127 + L1MA9 LINE L1 6022 6167 -145 1 1180 367 319 54 108 chr3 78113720 78113813 -81485970 + B4 SINE B4 1 83 -209 1 1180 252 77 0 0 chr3 78113813 78113852 -81485931 + (TTAA)n Simple_repeat Simple_repeat 4 42 0 1 1180 367 319 54 108 chr3 78113852 78113962 -81485821 + B4 SINE B4 84 192 -100 1 1180 499 316 27 75 chr3 78113941 78114129 -81485654 + B4 SINE B4 107 285 -7 1 1180 420 20 0 0 chr3 78116208 78116257 -81483526 + (TG)n Simple_repeat Simple_repeat 1 49 0 1 1180 247 276 65 8 chr3 78116541 78116665 -81483118 - Lx9 LINE L1 -9 7635 7505 1 1180 362 65 81 0 chr3 78116654 78116716 -81483067 - Lx9 LINE L1 -177 7467 7401 1 1180 282 246 14 0 chr3 78116887 78116956 -81482827 - ID2 SINE ID -11 72 3 1 1180 2526 76 0 3 chr3 78117872 78118203 -81481580 + L1_Mus2 LINE L1 6237 6566 0 1 147 3100 186 33 77 chr3 78118399 78119071 -81480712 - RLTR26 LTR ERVK 0 642 1 1 1181 237 65 0 0 chr3 78119094 78119125 -81480658 + (T)n Simple_repeat Simple_repeat 1 31 0 1 1181 303 357 20 105 chr3 78119438 78119732 -81480051 + MLT1B LTR MaLR 51 324 -66 1 1181 1627 112 0 0 chr3 78119790 78120040 -81479743 + L1Md_F2 LINE L1 3296 3545 -2338 1 1181 6867 77 32 12 chr3 78120040 78120226 -81479557 + L1Md_F2 LINE L1 4555 4737 -1146 1 1181 311 0 0 25 chr3 78120226 78120266 -81479517 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 1 1181 6867 77 32 12 chr3 78120266 78121090 -81478693 + L1Md_F2 LINE L1 4738 5585 -298 1 1181 6516 78 60 35 chr3 78121091 78122058 -81477725 + L1Md_F2 LINE L1 5587 6577 -5 1 1181 308 229 95 12 chr3 78122077 78122161 -81477622 + URR1B DNA MER1_type 129 219 -6 1 1181 23 68 0 0 chr3 78122759 78122803 -81476980 + AT_rich Low_complexity Low_complexity 1 44 0 1 1181 392 329 128 58 chr3 78122893 78123222 -81476561 + L2 LINE L2 2730 3081 -338 1 1181 351 280 63 8 chr3 78123229 78123355 -81476428 - L2a LINE L2 0 3426 3294 1 1181 210 71 0 0 chr3 78123743 78123771 -81476012 + (CA)n Simple_repeat Simple_repeat 2 29 0 1 1181 230 288 64 89 chr3 78124570 78124729 -81475054 + L1_Mur3 LINE L1 616 782 -6946 1 1181 180 0 0 0 chr3 78124729 78124749 -81475034 + (CAAA)n Simple_repeat Simple_repeat 4 23 0 1 1181 230 288 64 89 chr3 78124749 78124825 -81474958 + L1_Mur3 LINE L1 783 844 -6884 1 1181 1127 234 75 29 chr3 78125133 78125872 -81473911 + L1_Mur3 LINE L1 843 1611 -4269 1 1181 1581 187 117 57 chr3 78125875 78126352 -81473431 + L1_Mur1 LINE L1 1 506 -6476 1 1181 1620 101 20 0 chr3 78126348 78126595 -81473188 + L1_Mur1 LINE L1 5281 5532 -354 1 1181 266 0 0 0 chr3 78126595 78126627 -81473156 - B1_Mm SINE Alu -15 132 101 1 1181 1116 75 0 13 chr3 78126651 78126800 -81472983 + B1_Mm SINE Alu 1 147 0 1 1181 2034 180 9 140 chr3 78126816 78127386 -81472397 + Lx3B LINE L1 6477 6971 -2 1 1181 687 348 8 25 chr3 78127447 78127683 -81472100 + B4A SINE B4 1 232 -60 1 1181 3834 76 0 0 chr3 78128032 78128518 -81471265 - L1_Mus1 LINE L1 0 6567 6082 1 1181 1247 72 18 0 chr3 78128522 78128689 -81471094 - B2_Mm2 SINE B2 -10 185 16 1 1181 970 138 0 11 chr3 78128977 78129153 -81470630 + (GAAA)n Simple_repeat Simple_repeat 4 177 0 2 1181 1633 211 8 3 chr3 78129831 78130188 -81469595 + RLTR15 LTR ERVK 1 359 0 2 1181 25 51 0 0 chr3 78130868 78130907 -81468876 + AT_rich Low_complexity Low_complexity 1 39 0 2 1181 243 0 0 0 chr3 78132372 78132399 -81467384 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 2 1181 255 303 0 0 chr3 78132685 78132761 -81467022 + (CATG)n Simple_repeat Simple_repeat 3 78 0 2 1181 392 278 104 8 chr3 78132833 78133064 -81466719 + L1MA8 LINE L1 5713 5962 -338 2 1181 603 0 0 0 chr3 78133291 78133358 -81466425 + (TCTA)n Simple_repeat Simple_repeat 1 67 0 2 1181 239 222 62 44 chr3 78133533 78133646 -81466137 - Lx9 LINE L1 -7 7637 7523 2 1181 1163 316 115 7 chr3 78134490 78135099 -81464684 - Lx8 LINE L1 -10 7463 6789 2 1181 1070 311 40 33 chr3 78135103 78135555 -81464228 + Lx8 LINE L1 6305 6759 -714 2 1181 396 0 0 0 chr3 78135899 78135943 -81463840 + (CA)n Simple_repeat Simple_repeat 2 45 0 2 1181 39323 15 6 6 chr3 78136423 78143785 -81455998 - L1Md_A LINE L1 0 6582 1 2 1181 180 0 0 0 chr3 78143895 78143915 -81455868 + (CAAAT)n Simple_repeat Simple_repeat 2 21 0 2 1181 1508 286 73 67 chr3 78144053 78144798 -81454985 + RMER1B Other Other 7 479 -587 2 1181 180 125 0 0 chr3 78144798 78144830 -81454953 + (CA)n Simple_repeat Simple_repeat 2 33 0 2 1181 3420 237 31 32 chr3 78144830 78145834 -81453949 + RMER1A Other Other 5 891 -139 2 1181 207 0 0 0 chr3 78145834 78145857 -81453926 + (TGG)n Simple_repeat Simple_repeat 1 23 0 2 1181 3420 211 13 24 chr3 78145857 78145982 -81453801 + RMER1A Other Other 892 1016 -14 2 1181 1078 113 6 11 chr3 78145989 78146168 -81453615 + (GGAAA)n Simple_repeat Simple_repeat 3 180 0 2 1181 378 330 36 27 chr3 78146295 78146516 -81453267 + Lx8 LINE L1 5660 5904 -1569 2 1181 1522 85 80 4 chr3 78146559 78146784 -81452999 - L1_Mus2 LINE L1 0 6566 6325 2 1181 1777 234 33 39 chr3 78146816 78147306 -81452477 + Lx7 LINE L1 6911 7397 -299 2 1181 23367 76 3 1 chr3 78147401 78150705 -81449078 - L1Md_F LINE L1 -317 5566 2256 2 1181 5187 112 2 0 chr3 78150702 78151491 -81448292 - L1Md_F LINE L1 -5525 1091 301 2 1181 426 181 0 0 chr3 78151489 78151572 -81448211 - L1Md_F LINE L1 -5986 533 451 2 1181 1998 115 258 33 chr3 78152024 78152473 -81447310 - RLTR6_Mm LTR ERV1 -68 586 37 2 1181 259 228 200 38 chr3 78152475 78152580 -81447203 - RLTR6_Mm LTR ERV1 -532 122 1 2 1181 490 75 0 0 chr3 78152580 78152647 -81447136 - RLTR6-int LTR ERV1 0 7778 7712 2 1181 3370 34 0 0 chr3 78152631 78153040 -81446743 - RLTR6-int LTR ERV1 -619 7159 6751 2 1181 189 296 0 0 chr3 78153144 78153188 -81446595 + L2c LINE L2 3339 3382 -5 2 1181 328 236 79 0 chr3 78154328 78154417 -81445366 - MLT1A1 LTR MaLR -22 386 291 2 1181 738 101 0 0 chr3 78154737 78154846 -81444937 + (GA)n Simple_repeat Simple_repeat 2 110 0 2 1181 366 23 0 0 chr3 78155372 78155415 -81444368 + (TG)n Simple_repeat Simple_repeat 1 43 0 2 1181 236 301 67 19 chr3 78155766 78155871 -81443912 + L1MC4 LINE L1 7933 8042 0 2 1181 2705 229 76 89 chr3 78155900 78156628 -81443155 + L1_Mur3 LINE L1 279 1062 -6666 2 1181 1179 62 0 0 chr3 78156628 78156773 -81443010 + B1_Mm SINE Alu 1 145 -2 2 1181 2705 229 76 89 chr3 78156773 78156818 -81442965 + L1_Mur3 LINE L1 1063 1063 -6665 2 1181 261 0 0 0 chr3 78156818 78156847 -81442936 + (CAA)n Simple_repeat Simple_repeat 2 30 0 2 1181 2705 185 174 41 chr3 78156847 78157396 -81442387 + L1_Mur3 LINE L1 992 1518 -4362 2 1181 903 105 0 0 chr3 78157396 78157529 -81442254 + (GAA)n Simple_repeat Simple_repeat 3 135 0 2 1181 1243 167 253 42 chr3 78157529 78157789 -81441994 + L1_Mur3 LINE L1 1519 1907 -3973 2 1181 1747 210 90 13 chr3 78157791 78158228 -81441555 + MT2B LTR ERVL 1 601 0 2 1181 3272 172 23 15 chr3 78158229 78158373 -81441410 + L1_Mur3 LINE L1 1917 2061 -3819 2 1181 489 115 0 0 chr3 78158373 78158451 -81441332 + (CA)n Simple_repeat Simple_repeat 1 78 0 2 1181 3272 172 23 15 chr3 78158451 78158991 -81440792 + L1_Mur3 LINE L1 2062 2607 -3273 2 1181 511 280 113 118 chr3 78159110 78159613 -81440170 + RMER20B LTR ERVK 30 579 -48 2 1181 21 0 0 0 chr3 78161321 78161342 -81438441 + AT_rich Low_complexity Low_complexity 1 21 0 2 1181 22 35 0 0 chr3 78161401 78161430 -81438353 + AT_rich Low_complexity Low_complexity 1 29 0 2 1181 227 299 103 0 chr3 78162815 78162912 -81436871 + PB1D7 SINE Alu 5 111 -9 2 1181 1136 271 14 24 chr3 78163167 78163454 -81436329 + B4A SINE B4 9 292 0 2 1181 298 271 71 0 chr3 78165029 78165114 -81434669 - LTR78 LTR ERV1 -1010 294 204 2 1181 1415 29 0 0 chr3 78166011 78166184 -81433599 + L1Md_A LINE L1 6409 6581 -1 2 1181 333 340 74 6 chr3 78166587 78166750 -81433033 + HAL1-3A_ME LINE L1 2266 2439 -419 2 1181 233 98 24 0 chr3 78166750 78166791 -81432992 + (GGA)n Simple_repeat Simple_repeat 1 42 0 2 1181 570 15 0 0 chr3 78166914 78166981 -81432802 + (TAGA)n Simple_repeat Simple_repeat 2 68 0 2 1181 278 390 20 10 chr3 78168469 78168570 -81431213 - PB1 SINE Alu -16 111 10 2 1181 380 247 0 31 chr3 78170163 78170259 -81429524 - HAL1-3A_ME LINE L1 -790 2068 1976 2 1181 591 308 43 35 chr3 78170436 78170668 -81429115 - MER67C LTR ERV1 -101 610 377 2 1181 280 305 55 78 chr3 78170897 78171025 -81428758 + MIRb SINE MIR 60 184 -84 2 1181 807 325 109 7 chr3 78171176 78171579 -81428204 + Lx9 LINE L1 7055 7498 -146 2 1181 880 292 119 48 chr3 78172231 78172666 -81427117 + RCHARR1 DNA MER1_type 31 496 -478 2 1181 476 345 51 11 chr3 78172668 78172807 -81426976 + B3 SINE B2 16 159 -39 2 1181 338 61 0 20 chr3 78172807 78172857 -81426926 + (CATA)n Simple_repeat Simple_repeat 2 50 0 2 1181 431 345 51 11 chr3 78172857 78172893 -81426890 + B3A SINE B2 160 198 0 2 1181 446 0 19 0 chr3 78173057 78173111 -81426672 + (TAA)n Simple_repeat Simple_repeat 2 56 0 2 1181 642 246 75 0 chr3 78173122 78173256 -81426527 - B1_Mur1 SINE Alu -1 148 5 2 1181 625 273 74 13 chr3 78173256 78173637 -81426146 + RCHARR1 DNA MER1_type 528 967 -7 2 1181 22 56 0 0 chr3 78174227 78174263 -81425520 + AT_rich Low_complexity Low_complexity 1 36 0 2 1181 653 236 6 31 chr3 78174560 78174589 -81425194 + ID_B1 SINE B4 66 223 -1 2 1181 1057 45 0 0 chr3 78174589 78174722 -81425061 + B1_Mus1 SINE Alu 15 147 -1 2 1181 215 79 26 0 chr3 78174727 78174765 -81425018 + (CAAAA)n Simple_repeat Simple_repeat 3 41 0 2 1181 240 293 0 0 chr3 78176151 78176226 -81423557 + Lx8 LINE L1 5828 5902 -1571 2 1181 25 117 0 0 chr3 78176747 78176884 -81422899 + AT_rich Low_complexity Low_complexity 1 137 0 2 1181 4282 28 0 27 chr3 78179043 78179474 -81420309 + MT-int LTR MaLR 490 920 -178 2 1181 5438 8 0 0 chr3 78179474 78180083 -81419700 - L1Md_A LINE L1 0 6582 5974 2 1181 4282 28 0 27 chr3 78180083 78180198 -81419585 + MT-int LTR MaLR 921 1021 -77 2 1181 1482 59 5 0 chr3 78180556 78180743 -81419040 - B2_Mm1t SINE B2 -5 188 1 2 1181 369 62 0 0 chr3 78180796 78180844 -81418939 + (TA)n Simple_repeat Simple_repeat 2 49 0 2 1181 5036 76 0 0 chr3 78182113 78182759 -81417024 + L1_Mus1 LINE L1 5922 6567 0 2 1181 1267 248 132 21 chr3 78184187 78184487 -81415296 - MT2A LTR ERVL 0 533 187 2 1181 288 111 0 0 chr3 78184487 78184541 -81415242 + (CAAT)n Simple_repeat Simple_repeat 2 55 0 2 1181 1267 248 132 21 chr3 78184541 78184664 -81415119 - MT2A LTR ERVL -347 186 64 2 1181 599 284 44 30 chr3 78184544 78184747 -81415036 - MTD LTR MaLR -203 216 11 2 1181 3207 52 3 0 chr3 78185781 78186165 -81413618 - IAPEY_LTR LTR ERVK 0 385 1 2 1181 722 124 8 0 chr3 78187201 78187322 -81412461 + L1_Mus2 LINE L1 6445 6566 0 2 1181 954 26 0 0 chr3 78187675 78187788 -81411995 + (TC)n Simple_repeat Simple_repeat 2 114 0 2 1181 300 70 0 0 chr3 78187790 78187833 -81411950 + (TG)n Simple_repeat Simple_repeat 1 43 0 2 1181 961 316 28 15 chr3 78187868 78188193 -81411590 - Lx8 LINE L1 -184 7289 6961 2 1181 393 198 0 0 chr3 78188193 78188274 -81411509 + T-rich Low_complexity Low_complexity 1 81 0 2 1181 1935 310 35 23 chr3 78188274 78189021 -81410762 - Lx8 LINE L1 -522 6951 6196 2 1181 1468 258 94 43 chr3 78189052 78189659 -81410124 - Lx9 LINE L1 -2 7642 7005 2 1181 370 91 14 96 chr3 78189660 78189691 -81410092 - RLTR20B2 LTR ERVK -493 67 42 2 1181 4085 27 23 0 chr3 78189691 78190173 -81409610 + MT2_Mm LTR ERVL 1 493 0 2 1181 370 91 14 96 chr3 78190173 78190214 -81409569 - RLTR20B2 LTR ERVK -519 41 1 2 1181 1267 244 15 73 chr3 78190214 78190612 -81409171 + L1_Rod LINE L1 5313 5687 -160 2 1181 842 248 135 108 chr3 78190616 78191135 -81408648 - MT2A LTR ERVL 0 533 1 2 1181 347 125 0 0 chr3 78191135 78191191 -81408592 - MERVL_2A-int LTR ERVL -29 5732 5677 2 1181 1580 205 14 12 chr3 78191191 78191536 -81408247 - L1_Mur3 LINE L1 -785 5095 4750 2 1181 503 240 248 18 chr3 78191822 78192222 -81407561 + L1MA4 LINE L1 5508 6009 -291 2 1181 878 311 94 51 chr3 78192453 78192982 -81406801 + MLT1E2 LTR MaLR 76 627 0 2 1181 4722 74 2 6 chr3 78193607 78194243 -81405540 - L1Md_F2 LINE L1 -6 6576 5944 2 1181 507 72 0 12 chr3 78194245 78194329 -81405454 + Lx3_Mus LINE L1 6927 7009 0 2 1181 1088 231 43 12 chr3 78194344 78194598 -81405185 - MTD LTR MaLR -157 262 1 2 1181 483 320 50 24 chr3 78194973 78195154 -81404629 + B3A SINE B2 1 186 -30 2 1181 202 396 99 17 chr3 78195220 78195392 -81404391 + MIRb SINE MIR 72 257 -11 2 1181 3338 129 4 2 chr3 78195892 78196390 -81403393 + RLTR19 LTR ERVK 1 499 0 2 1181 518 0 16 0 chr3 78196981 78197043 -81402740 + (TCTA)n Simple_repeat Simple_repeat 2 64 0 2 1181 1198 28 0 0 chr3 78198341 78198486 -81401297 - L1Md_F2 LINE L1 -14 6568 6424 2 1181 7957 99 22 9 chr3 78199622 78200789 -81398994 - Lx3_Mus LINE L1 0 7009 5828 2 1181 378 228 50 0 chr3 78200801 78200902 -81398881 - L1_Mur3 LINE L1 -1030 4850 4745 2 1181 224 0 65 0 chr3 78200909 78200940 -81398843 + (TTTTA)n Simple_repeat Simple_repeat 3 35 0 2 1181 228 100 0 0 chr3 78200955 78200995 -81398788 + (TC)n Simple_repeat Simple_repeat 1 40 0 2 1181 315 0 0 0 chr3 78200995 78201030 -81398753 + (TG)n Simple_repeat Simple_repeat 2 36 0 2 1181 276 128 0 0 chr3 78201030 78201069 -81398714 - Lx3_Mus LINE L1 -1183 5826 5788 2 1181 997 131 17 0 chr3 78201069 78201244 -81398539 + (TTTC)n Simple_repeat Simple_repeat 2 179 0 2 1181 771 67 0 0 chr3 78201244 78201349 -81398434 - B1_Mm SINE Alu -1 146 42 2 1181 11192 102 33 30 chr3 78201362 78204382 -81395401 - Lx3_Mus LINE L1 -83 5803 1244 2 1181 1839 111 0 0 chr3 78204392 78204654 -81395129 - L1_Mus2 LINE L1 -2 6564 6303 2 1181 3068 86 3 181 chr3 78204654 78205293 -81394490 + L1Md_A LINE L1 5062 5586 -297 2 1181 8315 35 2 0 chr3 78205294 78206287 -81393496 + L1Md_A LINE L1 5588 6582 0 2 1181 642 109 54 0 chr3 78206287 78206379 -81393404 + L1_Mm LINE L1 5452 5548 -335 3 1181 600 144 0 0 chr3 78206377 78206502 -81393281 - Lx3_Mus LINE L1 -5712 1272 1148 2 1181 2061 182 64 57 chr3 78206502 78207262 -81392521 - Lx3_Mus LINE L1 -5968 1016 3 2 1181 3899 69 31 2 chr3 78207276 78207797 -81391986 + L1Md_F2 LINE L1 6047 6582 0 3 1181 22 70 0 0 chr3 78208345 78208388 -81391395 + AT_rich Low_complexity Low_complexity 1 43 0 3 1181 227 281 10 59 chr3 78208920 78209022 -81390761 + Tigger7 DNA MER2_type 2295 2391 -100 3 1181 441 366 29 11 chr3 78209033 78209207 -81390576 + Tigger5 DNA MER2_type 14 190 -2216 3 1181 516 212 94 6 chr3 78210506 78210686 -81389097 - L1MA9 LINE L1 -55 6257 6062 3 1181 261 271 34 34 chr3 78210829 78210974 -81388809 - L1MA9 LINE L1 -298 6014 5872 3 1181 394 311 132 24 chr3 78211050 78211604 -81388179 - L1M2c LINE L1 -4577 2591 1978 3 1181 233 327 73 56 chr3 78212279 78212457 -81387326 - L1M2c LINE L1 -5899 1269 1089 3 1181 210 162 0 26 chr3 78212973 78213011 -81386772 + GA-rich Low_complexity Low_complexity 3 39 0 3 1181 963 121 0 0 chr3 78215963 78216112 -81383671 + (GGA)n Simple_repeat Simple_repeat 3 151 0 3 1181 204 219 70 40 chr3 78217634 78217734 -81382049 + (TATATG)n Simple_repeat Simple_repeat 3 105 0 3 1181 216 163 0 0 chr3 78218917 78218960 -81380823 + T-rich Low_complexity Low_complexity 1 43 0 3 1181 867 286 80 38 chr3 78218979 78219292 -81380491 - RMER15 LTR ERVL -156 419 94 3 1181 22 0 0 0 chr3 78219936 78219958 -81379825 + AT_rich Low_complexity Low_complexity 1 22 0 3 1181 257 0 30 0 chr3 78220782 78220815 -81378968 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 3 1181 266 232 0 12 chr3 78220882 78220965 -81378818 - Lx6 LINE L1 -26 7434 7353 3 1181 184 146 18 35 chr3 78221048 78221105 -81378678 + (TTGTG)n Simple_repeat Simple_repeat 5 60 0 3 1181 459 0 0 0 chr3 78221976 78222027 -81377756 + (TC)n Simple_repeat Simple_repeat 1 51 0 3 1181 333 0 0 0 chr3 78222027 78222063 -81377720 + (CA)n Simple_repeat Simple_repeat 1 37 0 3 1181 565 274 105 35 chr3 78222487 78223068 -81376715 + L1MC LINE L1 3050 3690 -2456 3 1181 297 358 61 103 chr3 78223081 78223210 -81376573 + ORR1E LTR MaLR 51 171 -188 3 1181 993 92 0 0 chr3 78223210 78223352 -81376431 + (TTC)n Simple_repeat Simple_repeat 2 143 0 3 1181 297 358 61 103 chr3 78223352 78223369 -81376414 + ORR1E LTR MaLR 172 180 -179 3 1181 1214 48 7 0 chr3 78223369 78223516 -81376267 - B1_Mus1 SINE Alu 0 148 1 3 1181 297 358 61 103 chr3 78223516 78223679 -81376104 + ORR1E LTR MaLR 181 348 -11 3 1181 230 288 0 0 chr3 78223736 78223809 -81375974 + L1MC LINE L1 3707 3779 -2367 3 1181 308 323 85 33 chr3 78224005 78224335 -81375448 + L1MC LINE L1 4065 4411 -1735 3 1181 282 320 25 5 chr3 78224391 78224509 -81375274 + GA-rich Low_complexity Low_complexity 1 120 0 3 1181 1567 218 11 89 chr3 78224678 78225060 -81374723 + ORR1B1 LTR MaLR 41 392 -2 3 1181 23267 74 8 4 chr3 78225060 78228231 -81371552 + L1Md_F2 LINE L1 2401 5586 -297 3 1181 8083 45 2 2 chr3 78228231 78229225 -81370558 + L1Md_F2 LINE L1 5587 6580 -2 3 1181 944 137 0 46 chr3 78229257 78229410 -81370373 + B1_Mus1 SINE Alu 2 147 -1 3 1181 258 208 0 40 chr3 78229432 78229482 -81370301 + ORR1A4 LTR MaLR 274 321 -8 3 1181 2154 255 100 29 chr3 78229490 78230141 -81369642 - RMER1C Other Other -8 1334 638 3 1181 234 91 0 0 chr3 78230228 78230261 -81369522 + (A)n Simple_repeat Simple_repeat 1 33 0 3 1181 889 156 61 61 chr3 78230295 78230459 -81369324 + L1VL1 LINE L1 1 164 -6258 3 1181 1353 169 4 35 chr3 78230443 78230701 -81369082 + L1VL1 LINE L1 17 266 -6156 3 1181 2204 135 78 11 chr3 78230701 78231083 -81368700 + L1Md_F LINE L1 383 790 -5729 3 1181 8103 81 1 0 chr3 78231081 78232159 -81367624 + L1Md_F3 LINE L1 4507 5585 -298 3 1181 7585 62 10 4 chr3 78232160 78233149 -81366634 + L1Md_F3 LINE L1 5588 6582 -2 3 1181 972 294 90 43 chr3 78233189 78233931 -81365852 + L1MC3 LINE L1 5517 6293 -1492 3 1181 624 285 128 22 chr3 78234029 78234531 -81365252 + L1MC3 LINE L1 7093 7647 -138 3 1181 25 31 0 0 chr3 78234535 78234567 -81365216 + AT_rich Low_complexity Low_complexity 1 32 0 3 1181 1421 235 35 99 chr3 78234598 78234835 -81364948 - MTD LTR MaLR 0 419 207 3 1181 586 244 192 11 chr3 78234835 78235017 -81364766 - B3 SINE B2 0 216 2 3 1181 1421 235 35 99 chr3 78235017 78235181 -81364602 - MTD LTR MaLR -213 206 44 3 1181 249 57 0 0 chr3 78235198 78235233 -81364550 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 3 1181 194 309 0 0 chr3 78237873 78237915 -81361868 + MER5A DNA MER1_type 3 44 -145 3 1181 358 348 50 11 chr3 78238761 78238941 -81360842 + MLT1A0 LTR MaLR 176 362 -3 3 1181 24 32 0 0 chr3 78239809 78239840 -81359943 + AT_rich Low_complexity Low_complexity 1 31 0 3 1181 323 23 23 0 chr3 78240698 78240742 -81359041 + (CA)n Simple_repeat Simple_repeat 1 45 0 3 1181 2642 56 0 0 chr3 78241030 78241368 -81358415 - ORR1A1 LTR MaLR -8 338 1 3 1181 13488 64 7 3 chr3 78241368 78243154 -81356629 - ORR1A1-int LTR MaLR 0 1792 1 3 1181 2905 43 0 0 chr3 78243154 78243500 -81356283 - ORR1A1 LTR MaLR 0 346 1 3 1181 490 264 100 25 chr3 78243525 78243757 -81356026 + L1MA4 LINE L1 5345 5598 -693 3 1181 1726 208 5 98 chr3 78243757 78244174 -81355609 - ORR1C1 LTR MaLR 0 378 1 3 1181 490 264 100 25 chr3 78244174 78244221 -81355562 + L1MA4 LINE L1 5599 5645 -646 3 1181 221 373 0 0 chr3 78244313 78244380 -81355403 + PB1D10 SINE Alu 3 69 -48 3 1181 820 101 78 0 chr3 78244393 78244522 -81355261 - L1_Mus2 LINE L1 0 6566 6428 3 1181 274 236 198 0 chr3 78244867 78244973 -81354810 + L1MA4 LINE L1 6123 6249 -51 3 1181 194 347 71 0 chr3 78245419 78245517 -81354266 + MIRc SINE MIR 13 117 -151 3 1181 182 325 35 46 chr3 78246292 78246379 -81353404 - L2b LINE L2 -228 3147 3062 3 1181 52 17 0 0 chr3 78247523 78247582 -81352201 + AT_rich Low_complexity Low_complexity 1 59 0 3 1181 307 353 35 28 chr3 78247800 78247943 -81351840 + Lx8 LINE L1 7236 7379 -94 3 1181 241 143 56 14 chr3 78248068 78248139 -81351644 + (TA)n Simple_repeat Simple_repeat 1 74 0 3 1181 7217 109 20 15 chr3 78248177 78249670 -81350113 - L1_Mus4 LINE L1 0 6636 5129 3 1181 816 63 0 0 chr3 78249669 78249780 -81350003 + MusHAL1 LINE L1 85 195 -2517 3 1182 718 290 88 5 chr3 78250165 78250359 -81349424 + B3 SINE B2 1 210 -6 3 1182 266 305 16 123 chr3 78252263 78252296 -81347487 + YREP_Mm Unknown Unknown 156 184 -1628 3 1182 279 0 0 0 chr3 78252296 78252327 -81347456 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 3 1182 618 276 0 56 chr3 78252330 78252472 -81347311 - ID_B1 SINE B4 -9 215 82 3 1182 402 321 29 21 chr3 78252491 78252644 -81347139 + MIRc SINE MIR 86 233 -35 3 1182 329 247 8 26 chr3 78252884 78253158 -81346625 + GA-rich Low_complexity Low_complexity 1 268 0 3 1182 327 25 0 0 chr3 78253306 78253346 -81346437 + (GA)n Simple_repeat Simple_repeat 1 40 0 3 1182 716 131 131 0 chr3 78253814 78253944 -81345839 - URR1A DNA MER1_type -43 183 37 3 1182 242 331 148 31 chr3 78253986 78254148 -81345635 + MLT1A LTR MaLR 140 320 -54 3 1182 369 0 0 0 chr3 78254832 78254873 -81344910 + (GTTTG)n Simple_repeat Simple_repeat 4 44 0 3 1182 38480 5 0 0 chr3 78255159 78260531 -81339252 + L1Md_A LINE L1 213 5585 -298 3 1182 8948 7 0 0 chr3 78260532 78261528 -81338255 + L1Md_A LINE L1 5587 6582 0 3 1182 187 325 47 24 chr3 78262334 78262419 -81337364 - MIR SINE MIR -126 136 50 3 1182 345 284 0 0 chr3 78262676 78262792 -81336991 + GA-rich Low_complexity Low_complexity 2 117 0 3 1182 718 131 11 11 chr3 78262792 78262969 -81336814 + (TAGA)n Simple_repeat Simple_repeat 2 178 0 3 1182 409 182 13 101 chr3 78263132 78263291 -81336492 - Lx9 LINE L1 0 7644 7500 3 1182 266 243 39 139 chr3 78264434 78264563 -81335220 + LTR81A LTR ERV1? 48 163 -1187 3 1182 1056 227 66 71 chr3 78265523 78265924 -81333859 + RMER16 LTR ERVK 1 533 0 3 1182 327 239 72 18 chr3 78266036 78266147 -81333636 - L1MA4A LINE L1 -373 5930 5814 3 1182 180 77 0 0 chr3 78266155 78266181 -81333602 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 3 1182 1600 220 69 14 chr3 78266234 78266584 -81333199 - ORR1D1 LTR MaLR -5 369 1 3 1182 400 314 20 116 chr3 78266597 78266632 -81333151 - L1MA4A LINE L1 -509 5782 5753 3 1182 2969 29 6 0 chr3 78266632 78266976 -81332807 + ORR1A0 LTR MaLR 1 346 0 3 1182 400 314 20 116 chr3 78266976 78267141 -81332642 - L1MA4A LINE L1 -539 5752 5598 3 1182 359 241 83 9 chr3 78267141 78267250 -81332533 - PB1D10 SINE Alu 0 117 1 3 1182 400 314 20 116 chr3 78267250 78267394 -81332389 - L1MA4A LINE L1 -694 5597 5470 3 1182 2505 73 0 50 chr3 78268711 78269069 -81330714 - L1_Mus2 LINE L1 0 6566 6227 3 1182 881 186 12 0 chr3 78269081 78269242 -81330541 - RMER15 LTR ERVL -412 163 1 3 1182 558 228 74 0 chr3 78269244 78269393 -81330390 - L1_Mur3 LINE L1 -7288 424 265 3 1182 252 86 0 0 chr3 78270735 78270770 -81329013 + (TA)n Simple_repeat Simple_repeat 1 35 0 3 1182 1132 62 0 7 chr3 78271539 78271685 -81328098 + B1_Mm SINE Alu 1 145 -2 3 1182 207 0 0 0 chr3 78271685 78271708 -81328075 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 3 1182 204 40 0 0 chr3 78271768 78271793 -81327990 + (TG)n Simple_repeat Simple_repeat 2 26 0 3 1182 296 221 60 172 chr3 78271793 78272061 -81327722 + Lx9 LINE L1 7407 7644 0 3 1182 13090 66 3 4 chr3 78272568 78274945 -81324838 + L1Md_F2 LINE L1 4179 6559 -23 3 1182 5354 53 7 0 chr3 78274945 78275619 -81324164 + L1Md_F2 LINE L1 5903 6581 -1 3 1182 7734 67 2 10 chr3 78275619 78275650 -81324133 + L1Md_F2 LINE L1 6560 6582 0 3 1182 385 269 80 33 chr3 78275994 78276144 -81323639 + MLT1J1 LTR MaLR 149 305 -139 3 1182 760 262 63 63 chr3 78276699 78276984 -81322799 - L1_Rod LINE L1 -18 5829 5545 3 1182 1530 342 113 40 chr3 78277006 78277578 -81322205 + Lx8 LINE L1 6191 6837 -636 3 1182 207 0 0 0 chr3 78277578 78277601 -81322182 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 3 1182 1530 342 113 40 chr3 78277601 78277993 -81321790 + Lx8 LINE L1 6838 7224 -249 3 1182 1261 285 24 3 chr3 78278956 78279287 -81320496 + MTEb LTR MaLR 1 338 -41 3 1182 407 51 0 48 chr3 78281027 78281089 -81318694 - B1_Mus2 SINE Alu 0 147 89 3 1182 1082 213 169 36 chr3 78281107 78281414 -81318369 + ORR1C2 LTR MaLR 37 384 0 3 1182 198 0 0 0 chr3 78282278 78282300 -81317483 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 3 1182 383 283 22 0 chr3 78282544 78282636 -81317147 - PB1D10 SINE Alu -23 94 1 3 1182 264 156 14 72 chr3 78283691 78283760 -81316023 - RMER17C LTR ERVK 0 410 346 3 1182 511 336 13 57 chr3 78284128 78284286 -81315497 + B3A SINE B2 3 153 -45 3 1182 365 259 0 24 chr3 78285064 78285147 -81314636 + RLTR18 LTR ERVK 1 81 -535 3 1182 342 61 0 0 chr3 78285417 78285466 -81314317 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 3 1182 5137 46 0 6 chr3 78286796 78287455 -81312328 + L1Md_F2 LINE L1 5898 6552 -30 3 1182 180 77 0 0 chr3 78287455 78287481 -81312302 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 3 1182 318 274 64 64 chr3 78287836 78287858 -81311925 + L1MA5 LINE L1 5616 5636 -664 4 1182 3264 53 0 2 chr3 78287858 78288255 -81311528 - MTA_Mm LTR MaLR 0 396 1 4 1182 318 274 64 64 chr3 78288255 78288419 -81311364 + L1MA5 LINE L1 5637 5802 -498 4 1182 22 0 0 0 chr3 78288473 78288495 -81311288 + AT_rich Low_complexity Low_complexity 1 22 0 4 1182 261 259 0 23 chr3 78288555 78288642 -81311141 + L1MA5 LINE L1 6150 6234 -66 4 1182 27 29 0 0 chr3 78288685 78288719 -81311064 + AT_rich Low_complexity Low_complexity 1 34 0 4 1182 5364 192 35 24 chr3 78288836 78290034 -81309749 - Lx5 LINE L1 -61 6989 5775 4 1182 240 194 0 40 chr3 78290002 78290077 -81309706 - L1_Mur1 LINE L1 -4315 1571 1500 4 1182 893 155 0 17 chr3 78290078 78290255 -81309528 + CT-rich Low_complexity Low_complexity 5 178 0 4 1182 1002 202 331 6 chr3 78290288 78290627 -81309156 - MurERV4-int LTR ERVK -1207 4053 3604 4 1182 278 318 12 12 chr3 78290888 78291096 -81308687 - MMSAT4 Satellite Satellite -15 208 1 4 1182 318 292 34 34 chr3 78291214 78291431 -81308352 - MMSAT4 Satellite Satellite -5 217 1 4 1182 277 286 0 0 chr3 78292427 78292546 -81307237 - MurSatRep1 Unknown Unknown -1408 729 611 4 1182 36313 31 4 1 chr3 78292714 78300188 -81299595 - L1Md_T LINE L1 0 6585 1 4 1182 348 127 42 0 chr3 78300189 78300260 -81299523 + L1_Mur3 LINE L1 1411 1484 -4396 4 1182 360 0 0 0 chr3 78300262 78300302 -81299481 + (TAA)n Simple_repeat Simple_repeat 3 42 0 4 1182 29847 37 0 0 chr3 78300302 78304108 -81295675 + L1Md_T LINE L1 1781 5586 -297 4 1182 9040 5 0 0 chr3 78304108 78305104 -81294679 + L1Md_T LINE L1 5587 6582 0 4 1182 1587 161 57 16 chr3 78305126 78305651 -81294132 - L1_Mur2 LINE L1 -4452 1425 871 4 1182 432 0 0 0 chr3 78306071 78306119 -81293664 + (CA)n Simple_repeat Simple_repeat 2 49 0 4 1182 325 330 62 9 chr3 78306150 78306361 -81293422 + L1ME1 LINE L1 5940 6161 -18 4 1182 298 22 0 61 chr3 78306364 78306413 -81293370 + (TGAA)n Simple_repeat Simple_repeat 3 48 0 4 1182 286 211 28 7 chr3 78306706 78306849 -81292934 + GA-rich Low_complexity Low_complexity 1 146 0 4 1182 27 0 0 0 chr3 78307447 78307474 -81292309 + AT_rich Low_complexity Low_complexity 1 27 0 4 1182 25 0 0 0 chr3 78308960 78308985 -81290798 + AT_rich Low_complexity Low_complexity 1 25 0 4 1182 1117 273 143 20 chr3 78309234 78309673 -81290110 + RLTR16 LTR ERVK 1 493 -12 4 1182 189 325 12 35 chr3 78310014 78310100 -81289683 - MIR3 SINE MIR 0 208 125 4 1182 33 56 0 0 chr3 78310170 78310224 -81289559 + AT_rich Low_complexity Low_complexity 1 54 0 4 1182 360 0 0 0 chr3 78312683 78312723 -81287060 + (A)n Simple_repeat Simple_repeat 1 40 0 4 1182 245 319 0 14 chr3 78312792 78312865 -81286918 + tRNA-Ala-GCY_ tRNA tRNA 2 73 -2 4 1182 213 371 10 40 chr3 78312865 78312891 -81286892 + ID_B1 SINE B4 8 103 -121 4 1182 321 305 242 18 chr3 78314414 78314691 -81285092 + LTR50 LTR ERVL 335 673 -122 4 1182 346 367 100 35 chr3 78314770 78315081 -81284702 + L1M5 LINE L1 2287 2617 -3529 4 1182 1611 32 0 0 chr3 78315529 78315717 -81284066 + B2_Mm1t SINE B2 2 189 -4 4 1182 567 0 0 0 chr3 78316601 78316664 -81283119 + (TC)n Simple_repeat Simple_repeat 2 64 0 4 1182 355 243 0 51 chr3 78318408 78318486 -81281297 - PB1 SINE Alu -11 116 43 4 1182 1580 173 22 141 chr3 78318968 78319345 -81280438 + RMER10B LTR ERVL 1 334 -64 4 1182 594 103 0 0 chr3 78319345 78319432 -81280351 + (CA)n Simple_repeat Simple_repeat 2 88 0 4 1182 1580 173 22 141 chr3 78319432 78319458 -81280325 + RMER10B LTR ERVL 335 356 -42 4 1182 461 259 28 41 chr3 78321751 78321896 -81277887 - B1_Mur3 SINE Alu -4 145 3 4 1182 1171 237 31 14 chr3 78322202 78322493 -81277290 + Lx5 LINE L1 6122 6417 -633 4 1182 463 259 28 41 chr3 78322630 78322775 -81277008 + B1_Mur3 SINE Alu 3 145 -4 4 1182 2163 268 54 5 chr3 78322875 78323449 -81276334 + Lx5 LINE L1 6444 7045 -5 4 1182 877 230 143 42 chr3 78324526 78324862 -81274921 - ORR1D2 LTR MaLR 0 370 1 4 1182 5214 135 33 2 chr3 78325462 78326250 -81273533 - Lx4A LINE L1 0 7058 6247 4 1182 3781 109 3 8 chr3 78326251 78326841 -81272942 + L1_Mur2 LINE L1 5001 5587 -290 4 1182 306 294 0 0 chr3 78328785 78328853 -81270930 + ID4_ SINE ID 5 72 -11 4 1182 776 297 101 36 chr3 78328940 78329881 -81269902 + L1M2c LINE L1 1529 2511 -4338 4 1182 378 0 0 0 chr3 78329940 78329982 -81269801 + (CA)n Simple_repeat Simple_repeat 2 43 0 4 1182 262 245 103 12 chr3 78330025 78330190 -81269593 + L1M2c LINE L1 2708 2887 -3962 4 1182 963 294 109 59 chr3 78330231 78331420 -81268363 + L1M2c LINE L1 2962 4254 -2591 4 1182 381 22 0 0 chr3 78331420 78331466 -81268317 + (TTTTG)n Simple_repeat Simple_repeat 2 47 0 4 1182 564 42 0 0 chr3 78331470 78331541 -81268242 + (TG)n Simple_repeat Simple_repeat 1 71 0 4 1182 963 294 109 59 chr3 78331541 78331564 -81268219 + L1M2c LINE L1 4255 4261 -2584 4 1182 608 320 42 23 chr3 78331564 78331829 -81267954 - B4A SINE B4 -18 274 5 4 1182 963 294 109 59 chr3 78331829 78332105 -81267678 + L1M2c LINE L1 4262 4531 -2314 4 1182 4188 129 60 15 chr3 78332201 78332879 -81266904 - Lx2 LINE L1 -3 6994 6286 4 1182 2768 104 97 5 chr3 78332884 78333241 -81266542 + Lx2 LINE L1 5428 5801 -82 4 1182 306 0 0 0 chr3 78333241 78333275 -81266508 + (GGGA)n Simple_repeat Simple_repeat 3 36 0 4 1182 1354 39 6 16 chr3 78333275 78333457 -81266326 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 4 1182 2768 77 95 5 chr3 78333457 78333689 -81266094 + Lx2 LINE L1 5802 6056 -941 4 1182 21 36 0 0 chr3 78334166 78334194 -81265589 + AT_rich Low_complexity Low_complexity 1 28 0 4 1182 323 367 86 13 chr3 78335537 78335689 -81264094 - MLT1A LTR MaLR -44 330 168 4 1182 26 30 0 0 chr3 78336284 78336317 -81263466 + AT_rich Low_complexity Low_complexity 1 33 0 4 1182 2667 250 28 2 chr3 78336592 78337237 -81262546 + Lx5 LINE L1 6225 6886 -164 4 1182 4632 83 0 8 chr3 78337278 78337912 -81261871 - L1Md_F2 LINE L1 -1 6581 5953 4 1182 382 380 12 6 chr3 78337941 78338105 -81261678 + Lx5 LINE L1 6874 7038 -12 4 1182 207 100 0 0 chr3 78338151 78338181 -81261602 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 4 1182 21 36 0 0 chr3 78339110 78339138 -81260645 + AT_rich Low_complexity Low_complexity 1 28 0 4 1182 2617 83 8 16 chr3 78339555 78339936 -81259847 + L1_Mus3 LINE L1 6261 6638 0 4 1182 1008 250 101 41 chr3 78341717 78342034 -81257749 + MTEb LTR MaLR 1 336 -43 4 1182 26 74 0 0 chr3 78342089 78342143 -81257640 + AT_rich Low_complexity Low_complexity 1 54 0 4 1182 2190 221 103 74 chr3 78342224 78342714 -81257069 - Lx9 LINE L1 -24 7620 7093 4 1182 180 0 0 0 chr3 78342714 78342734 -81257049 + (TTGTG)n Simple_repeat Simple_repeat 4 23 0 4 1182 2190 221 103 74 chr3 78342734 78343049 -81256734 - Lx9 LINE L1 -552 7092 6793 4 1182 3262 229 137 17 chr3 78343047 78344254 -81255529 + Lx9 LINE L1 4583 5968 -1676 4 1182 593 223 12 183 chr3 78344425 78344666 -81255117 + Lx9 LINE L1 6306 6505 -1139 4 1182 445 219 8 42 chr3 78344679 78344798 -81254985 + Lx9 LINE L1 7040 7154 -490 4 1182 1716 267 87 22 chr3 78344835 78345514 -81254269 + L1_Mur3 LINE L1 534 1256 -6456 4 1182 213 39 0 0 chr3 78345739 78345765 -81254018 + (CA)n Simple_repeat Simple_repeat 2 27 0 4 1182 850 224 68 10 chr3 78345833 78346297 -81253486 + L1_Mur3 LINE L1 893 1387 -4490 4 1182 32746 58 1 8 chr3 78346296 78351482 -81248301 + L1Md_F2 LINE L1 438 5585 -298 4 1182 7923 48 2 17 chr3 78351483 78352481 -81247302 + L1Md_F2 LINE L1 5587 6569 -13 4 1182 3176 206 45 10 chr3 78352497 78353150 -81246633 + L1_Mur3 LINE L1 1377 2058 -3819 4 1182 279 0 0 0 chr3 78353150 78353181 -81246602 + (CA)n Simple_repeat Simple_repeat 1 31 0 4 1182 3176 206 45 10 chr3 78353181 78353332 -81246451 + L1_Mur3 LINE L1 2059 2209 -3668 4 1182 3553 184 25 91 chr3 78353334 78354034 -81245749 + L1Md_A LINE L1 446 1138 -5586 4 1182 902 126 137 12 chr3 78354034 78354195 -81245588 + B2_Mm1t SINE B2 1 181 -12 4 1182 186 43 0 0 chr3 78354195 78354218 -81245565 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 4 1182 12875 78 12 8 chr3 78354218 78356230 -81243553 + L1Md_A LINE L1 1139 3093 -2790 4 1182 1815 112 31 22 chr3 78356232 78356551 -81243232 - RLTRETN_Mm LTR ERVK 0 322 1 4 1182 17599 146 26 18 chr3 78356551 78363385 -81236398 - ETnERV2-int LTR ERVK -172 7234 1 4 1182 1818 112 31 22 chr3 78363385 78363704 -81236079 - RLTRETN_Mm LTR ERVK 0 322 1 4 1182 17546 76 3 1 chr3 78363704 78366195 -81233588 + L1_Mm LINE L1 3090 5614 -628 4 1182 6972 85 28 7 chr3 78366195 78367169 -81232614 + L1Md_F2 LINE L1 5587 6580 -2 4 1182 1037 130 0 0 chr3 78367169 78367215 -81232568 + L1_Mm LINE L1 5615 5656 -586 4 1182 2632 61 11 45 chr3 78367217 78367575 -81232208 - ORR1A1 LTR MaLR 0 346 1 4 1182 11416 66 122 4 chr3 78367575 78369179 -81230604 - ORR1A1-int LTR MaLR 0 1792 1 4 1182 6429 182 34 62 chr3 78369192 78370853 -81228930 + L1_Mur2 LINE L1 2372 3985 -1892 4 1182 32924 73 16 6 chr3 78370845 78376348 -81223435 + L1Md_F3 LINE L1 439 5994 -590 4 1182 2031 238 37 2 chr3 78376346 78376835 -81222948 + Lx7 LINE L1 6170 6675 -1021 4 1182 5141 121 58 26 chr3 78376835 78377711 -81222072 + RMER17A2 LTR ERVK 3 906 0 4 1182 721 208 27 0 chr3 78377711 78377860 -81221923 + Lx7 LINE L1 6668 6820 -876 4 1182 1778 169 12 58 chr3 78377867 78378212 -81221571 - ORR1A4 LTR MaLR 0 329 1 4 1182 1678 201 79 5 chr3 78378216 78378645 -81221138 + Lx9 LINE L1 7183 7643 -1 4 1182 258 392 83 28 chr3 78378750 78379002 -81220781 - MIRb SINE MIR 0 268 3 4 147 4706 108 67 7 chr3 78380491 78381197 -81218586 - Lx2A LINE L1 -6 7002 6255 4 1183 1019 272 118 21 chr3 78381253 78381636 -81218147 - Lx8 LINE L1 -101 7372 6953 4 1183 1166 149 32 5 chr3 78381655 78381871 -81217912 - Lx2 LINE L1 -3 6994 6773 4 1183 216 0 0 0 chr3 78381893 78381917 -81217866 + (TTGG)n Simple_repeat Simple_repeat 4 27 0 4 1183 873 111 91 7 chr3 78381936 78382090 -81217693 - Lx LINE L1 -12 6642 6476 4 1183 541 93 0 23 chr3 78382090 78382167 -81217616 + L1_Mus4 LINE L1 6030 6106 -530 4 1183 281 281 37 0 chr3 78382226 78382308 -81217475 - Lx8 LINE L1 -598 6875 6791 4 1183 4317 106 16 6 chr3 78382308 78383556 -81216227 + L1VL4 LINE L1 194 1455 -2104 4 1183 2841 62 8 5 chr3 78383556 78383930 -81215853 - MTA_Mm LTR MaLR -21 375 1 4 1183 666 274 25 45 chr3 78384714 78384892 -81214891 + B3A SINE B2 2 177 -21 4 1183 342 0 0 0 chr3 78384892 78384930 -81214853 + (TAAA)n Simple_repeat Simple_repeat 2 39 0 4 1183 666 274 25 45 chr3 78384930 78384950 -81214833 + B3A SINE B2 178 196 -2 4 1183 285 269 0 0 chr3 78385484 78385551 -81214232 + tRNA-Ala-GCY_ tRNA tRNA 2 68 -7 4 1183 414 39 0 0 chr3 78385554 78385606 -81214177 + (CA)n Simple_repeat Simple_repeat 2 53 0 4 1183 871 251 15 25 chr3 78385924 78386124 -81213659 + B3 SINE B2 11 208 -8 4 1183 21 0 0 0 chr3 78386124 78386145 -81213638 + AT_rich Low_complexity Low_complexity 1 21 0 4 1183 818 335 51 30 chr3 78386510 78386909 -81212874 + Helitron3Na_Mam RC Helitron 45 485 -1 4 1183 208 315 0 0 chr3 78387036 78387090 -81212693 + MER5A DNA MER1_type 133 186 -3 4 1183 294 321 96 15 chr3 78387376 78387512 -81212271 + RSINE1 SINE B4 3 149 -16 5 1183 22 0 0 0 chr3 78388099 78388121 -81211662 + AT_rich Low_complexity Low_complexity 1 22 0 5 1183 515 242 0 20 chr3 78388437 78388538 -81211245 + ID_B1 SINE B4 122 220 -4 5 1183 1580 279 81 30 chr3 78388595 78389526 -81210257 - L1MA10 LINE L1 -123 6211 5228 5 1183 232 302 66 49 chr3 78389541 78389663 -81210120 - MLT1A LTR MaLR -18 356 233 5 1183 690 236 97 13 chr3 78389959 78390187 -81209596 - L1MA10 LINE L1 -905 5235 4989 5 1183 365 244 0 49 chr3 78390329 78390411 -81209372 + ID4 SINE ID 4 81 -2 5 1183 324 0 0 0 chr3 78391530 78391566 -81208217 + (CA)n Simple_repeat Simple_repeat 1 36 0 5 1183 374 277 234 16 chr3 78392007 78392315 -81207468 + L1MC1 LINE L1 5261 5635 -709 5 1183 289 331 7 14 chr3 78392786 78392924 -81206859 - MER34 LTR ERV1 -56 486 350 5 1183 225 245 108 39 chr3 78393217 78393319 -81206464 - MER34 LTR ERV1 -390 152 44 5 1183 422 244 92 0 chr3 78393334 78393465 -81206318 + L1MC1 LINE L1 5713 5855 -478 5 1183 537 278 53 9 chr3 78393525 78393750 -81206033 + L1MC1 LINE L1 6091 6325 -8 5 1183 357 317 164 32 chr3 78393799 78394141 -81205642 - L2 LINE L2 -562 2857 2471 5 1183 333 0 0 0 chr3 78395656 78395693 -81204090 + (TTCA)n Simple_repeat Simple_repeat 3 39 0 5 1183 400 186 0 29 chr3 78396785 78396890 -81202893 + GA-rich Low_complexity Low_complexity 2 103 0 5 1183 3623 179 16 47 chr3 78397258 78398060 -81201723 + Lx9 LINE L1 6867 7643 -1 5 1183 273 302 16 0 chr3 78398078 78398141 -81201642 + ID4_ SINE ID 11 74 -9 5 1183 4445 62 18 3 chr3 78400483 78401054 -81198729 - L1Md_F2 LINE L1 -12 6570 5992 5 1183 403 341 87 27 chr3 78401066 78401250 -81198533 + B3 SINE B2 3 197 -19 5 1183 283 306 8 115 chr3 78401483 78401605 -81198178 - PB1D7 SINE Alu 0 120 12 5 1183 2425 193 65 34 chr3 78401648 78401844 -81197939 - Lx7 LINE L1 0 7696 7471 5 1183 243 0 0 0 chr3 78401844 78401871 -81197912 + (GA)n Simple_repeat Simple_repeat 2 28 0 5 1183 2425 193 65 34 chr3 78401871 78402226 -81197557 - Lx7 LINE L1 -226 7470 7128 5 1183 554 184 0 10 chr3 78402221 78402320 -81197463 - Lx7 LINE L1 -1354 6342 6245 5 1183 251 391 9 0 chr3 78403171 78403286 -81196497 + Charlie4z DNA MER1_type 13 128 -39 5 1183 2854 158 32 0 chr3 78403894 78404399 -81195384 + Lx LINE L1 6134 6654 0 5 1183 522 0 0 0 chr3 78404478 78404536 -81195247 + (TC)n Simple_repeat Simple_repeat 1 58 0 5 1183 1251 46 16 99 chr3 78404536 78404728 -81195055 - L1_Mus2 LINE L1 -6 6560 6385 5 1183 1245 60 0 112 chr3 78405096 78405301 -81194482 + L1_Mus2 LINE L1 6385 6566 0 5 1183 207 0 0 0 chr3 78405382 78405405 -81194378 + (TTG)n Simple_repeat Simple_repeat 2 24 0 5 1183 1062 121 0 0 chr3 78405407 78405581 -81194202 - Lx LINE L1 -3 6651 6478 5 1183 416 202 0 0 chr3 78405646 78405725 -81194058 + PB1D10 SINE Alu 38 116 -1 5 1183 808 338 65 19 chr3 78406201 78406851 -81192932 - L1ME1 LINE L1 -21 6158 5470 5 1183 339 355 9 0 chr3 78406902 78407009 -81192774 - ID_B1 SINE B4 -36 188 81 5 1183 396 358 22 34 chr3 78407152 78407421 -81192362 - L1ME1 LINE L1 -872 5274 5009 5 1183 273 259 69 23 chr3 78407469 78407556 -81192227 - L1ME1 LINE L1 -1198 4948 4858 5 1183 35526 51 1 16 chr3 78407902 78413179 -81186604 + L1Md_A LINE L1 389 5586 -297 5 1183 8352 35 1 0 chr3 78413179 78414174 -81185609 + L1Md_A LINE L1 5587 6582 0 5 1183 198 0 0 0 chr3 78415020 78415042 -81184741 + (A)n Simple_repeat Simple_repeat 1 22 0 5 1183 6604 131 14 7 chr3 78416663 78417899 -81181884 + Lx LINE L1 5408 6650 -4 5 1183 303 310 158 10 chr3 78417904 78418005 -81181778 + PB1D10 SINE Alu 1 116 -1 5 1183 931 309 4 7 chr3 78418595 78418866 -81180917 + B4A SINE B4 5 274 -18 5 1183 203 292 0 0 chr3 78418872 78418920 -81180863 + (CATATA)n Simple_repeat Simple_repeat 1 48 0 5 1183 519 317 117 10 chr3 78418936 78419226 -81180557 - L1MD1 LINE L1 -319 5923 5603 5 1183 529 284 97 11 chr3 78419232 78419417 -81180366 + MER57C2 LTR ERV1 13 213 -221 5 1183 1673 69 17 9 chr3 78419421 78419654 -81180129 + L1Md_F2 LINE L1 6348 6582 0 5 1183 254 115 0 19 chr3 78419658 78419711 -81180072 + (TAAA)n Simple_repeat Simple_repeat 4 55 0 5 1183 329 287 55 132 chr3 78419828 78420000 -81179783 - ORR1E LTR MaLR -42 317 161 5 1183 2770 121 26 0 chr3 78420000 78420430 -81179353 - BGLII_B LTR ERVK 0 441 1 5 1183 329 287 55 132 chr3 78420430 78420514 -81179269 - ORR1E LTR MaLR -199 160 82 5 1183 1958 276 77 25 chr3 78420517 78421372 -81178411 - L1M2 LINE L1 -1715 4428 3529 5 1183 259 197 16 0 chr3 78421386 78421447 -81178336 - B4A SINE B4 -229 63 2 5 1183 444 51 0 0 chr3 78421561 78421620 -81178163 + (TCTA)n Simple_repeat Simple_repeat 2 60 0 5 1183 519 292 55 46 chr3 78421668 78421905 -81177878 - L1_Rod LINE L1 -653 5194 4956 5 1183 532 42 0 0 chr3 78423398 78423470 -81176313 + L1Md_T LINE L1 6510 6581 -1 5 1183 240 35 0 0 chr3 78423568 78423597 -81176186 + (TTG)n Simple_repeat Simple_repeat 2 30 0 5 1183 359 266 141 33 chr3 78423961 78424260 -81175523 + L1MD2 LINE L1 5006 5336 -810 5 1183 305 297 116 0 chr3 78424441 78424579 -81175204 + L1MD2 LINE L1 5574 5727 -632 5 1183 333 340 25 30 chr3 78424679 78424876 -81174907 + L1MD2 LINE L1 5980 6175 -184 5 1183 1126 55 7 0 chr3 78425370 78425515 -81174268 + B1_Mus2 SINE Alu 2 147 0 5 1183 261 0 0 0 chr3 78425517 78425546 -81174237 + (A)n Simple_repeat Simple_repeat 1 29 0 5 1183 335 320 0 10 chr3 78425743 78425847 -81173936 + MLT1A1 LTR MaLR 306 408 0 5 1183 284 297 89 52 chr3 78425847 78425974 -81173809 + MER68 LTR ERVL 37 168 -395 5 1183 218 333 13 13 chr3 78426004 78426080 -81173703 + ID4 SINE ID 2 77 -6 5 1183 380 20 0 20 chr3 78427407 78427457 -81172326 + (CA)n Simple_repeat Simple_repeat 2 50 0 5 1183 254 312 0 0 chr3 78427494 78427571 -81172212 + ID4 SINE ID 2 78 -5 5 1183 396 0 0 0 chr3 78427611 78427655 -81172128 + (TG)n Simple_repeat Simple_repeat 2 45 0 5 1183 23 68 0 0 chr3 78427996 78428040 -81171743 + AT_rich Low_complexity Low_complexity 1 44 0 5 1183 24 32 0 0 chr3 78428406 78428437 -81171346 + AT_rich Low_complexity Low_complexity 1 31 0 5 1183 28 71 0 0 chr3 78428546 78428602 -81171181 + AT_rich Low_complexity Low_complexity 1 56 0 5 1183 776 22 0 96 chr3 78428851 78429050 -81170733 + (TTC)n Simple_repeat Simple_repeat 1 180 0 5 1183 333 109 0 0 chr3 78429050 78429096 -81170687 + (TCC)n Simple_repeat Simple_repeat 1 46 0 5 1183 187 204 102 0 chr3 78429331 78429380 -81170403 + L4 LINE RTE 1477 1530 -499 5 1183 449 282 64 53 chr3 78429898 78430179 -81169604 + L1M2a LINE L1 1944 2227 -4941 5 1183 234 0 0 0 chr3 78430669 78430695 -81169088 + (TG)n Simple_repeat Simple_repeat 1 26 0 5 1183 519 17 0 0 chr3 78430695 78430755 -81169028 + (GA)n Simple_repeat Simple_repeat 1 60 0 5 1183 254 323 47 26 chr3 78430856 78431047 -81168736 + L1M2a LINE L1 2538 2732 -4436 5 1183 1196 288 72 14 chr3 78431247 78431592 -81168191 - ORR1D2 LTR MaLR -5 365 1 5 1183 1580 275 82 26 chr3 78431733 78432602 -81167181 + L1M2a LINE L1 3278 4194 -2970 5 1183 264 283 131 0 chr3 78432603 78432702 -81167081 + PB1D7 SINE Alu 1 112 -8 5 1183 911 248 63 82 chr3 78432835 78433138 -81166645 - MTE2a LTR MaLR 0 379 83 5 1183 417 314 8 33 chr3 78433303 78433425 -81166358 + RSINE1 SINE B4 18 136 -29 5 1183 592 270 133 6 chr3 78433684 78433957 -81165826 + L1M2a LINE L1 6368 6684 -520 5 1183 288 0 0 0 chr3 78434446 78434478 -81165305 + (TA)n Simple_repeat Simple_repeat 2 33 0 5 1183 227 209 0 0 chr3 78435827 78435870 -81163913 + (CATA)n Simple_repeat Simple_repeat 4 46 0 5 1183 261 0 0 0 chr3 78436601 78436630 -81163153 + (TG)n Simple_repeat Simple_repeat 1 29 0 5 1183 315 330 35 9 chr3 78439999 78440115 -81159668 + RMER30 DNA MER1_type 10 128 -74 5 1183 583 143 119 31 chr3 78440492 78440651 -81159132 - Lx2A LINE L1 -23 6985 6813 5 1183 384 271 91 18 chr3 78440651 78440834 -81158949 + B3A SINE B2 19 216 0 5 1183 462 298 48 34 chr3 78440845 78440947 -81158836 + B1_Mur1 SINE Alu 1 109 -40 5 1183 3441 94 37 0 chr3 78440947 78441436 -81158347 - LTRIS4 LTR ERV1 0 507 1 5 1183 462 298 48 34 chr3 78441436 78441479 -81158304 + B1_Mur1 SINE Alu 110 148 -1 5 1183 316 177 12 25 chr3 78441494 78441575 -81158208 + Lx5 LINE L1 6971 7050 0 5 1183 915 217 262 23 chr3 78441612 78441871 -81157912 + L1_Mur2 LINE L1 505 825 -6261 5 1183 4556 150 39 71 chr3 78441874 78442806 -81156977 - RLTR13D6 LTR ERVK 0 902 1 5 1183 15680 136 74 26 chr3 78442812 78443994 -81155789 + L1_Mur2 LINE L1 829 2051 -3826 5 1183 249 33 0 0 chr3 78443994 78444024 -81155759 + (TG)n Simple_repeat Simple_repeat 2 31 0 5 1183 15680 124 20 30 chr3 78444024 78445252 -81154531 + L1_Mur2 LINE L1 2052 3272 -2605 5 1183 2997 74 5 8 chr3 78445252 78445649 -81154134 - MTA_Mm LTR MaLR 0 396 1 5 1183 15680 124 20 30 chr3 78445649 78446498 -81153285 + L1_Mur2 LINE L1 3273 4125 -1752 5 1183 2890 119 37 8 chr3 78446490 78447005 -81152778 + L1_Mur2 LINE L1 4887 5416 -461 5 1183 8018 39 1 2 chr3 78447003 78448649 -81151134 - L1Md_F2 LINE L1 0 6582 4939 5 1183 239 119 24 0 chr3 78448647 78448689 -81151094 + L1_Mur2 LINE L1 5421 5463 -423 5 1183 1056 129 0 0 chr3 78448689 78448836 -81150947 + B1_Mus2 SINE Alu 1 147 0 5 1183 189 0 0 0 chr3 78448851 78448872 -81150911 + (A)n Simple_repeat Simple_repeat 1 21 0 5 1183 2249 149 24 38 chr3 78448872 78449296 -81150487 + L1_Mur2 LINE L1 5441 5858 -19 5 1183 1272 191 25 0 chr3 78449314 78449550 -81150233 + Lx4A LINE L1 6815 7056 -2 5 1183 378 0 0 0 chr3 78449551 78449593 -81150190 + (TAAA)n Simple_repeat Simple_repeat 3 44 0 5 1183 377 299 8 71 chr3 78449618 78449744 -81150039 + RSINE1 SINE B4 6 123 -42 5 1183 399 119 0 0 chr3 78449753 78449820 -81149963 + (CA)n Simple_repeat Simple_repeat 2 68 0 5 1183 21 36 0 0 chr3 78449837 78449865 -81149918 + AT_rich Low_complexity Low_complexity 1 28 0 5 1183 466 333 117 18 chr3 78451402 78451625 -81148158 + ORR1E LTR MaLR 115 359 0 5 1183 23 97 0 0 chr3 78451987 78452059 -81147724 + AT_rich Low_complexity Low_complexity 1 72 0 5 1183 21 0 0 0 chr3 78452693 78452714 -81147069 + AT_rich Low_complexity Low_complexity 1 21 0 5 1183 292 304 96 90 chr3 78452814 78453136 -81146647 + ORR1E LTR MaLR 1 324 -35 5 1183 768 22 0 0 chr3 78453474 78453564 -81146219 + (GAAA)n Simple_repeat Simple_repeat 3 92 0 5 1183 1956 261 21 28 chr3 78453569 78454260 -81145523 + L1VL4 LINE L1 138 760 -5542 5 1183 368 292 20 59 chr3 78454263 78454396 -81145387 + B4A SINE B4 99 226 -66 5 1183 992 77 7 0 chr3 78454396 78454539 -81145244 + (GGAAA)n Simple_repeat Simple_repeat 3 146 0 5 1183 368 292 20 59 chr3 78454539 78454558 -81145225 + B4A SINE B4 227 245 -47 5 1183 501 88 0 0 chr3 78454559 78454639 -81145144 + (GAAA)n Simple_repeat Simple_repeat 3 82 0 5 1183 1574 110 32 6 chr3 78454639 78455103 -81144680 + L1VL4 LINE L1 859 1295 -2403 5 1183 21954 125 23 9 chr3 78455083 78459679 -81140104 + L1_Mus3 LINE L1 2000 6638 0 6 1183 339 136 22 43 chr3 78460422 78460514 -81139269 + (TATATG)n Simple_repeat Simple_repeat 4 93 0 6 1183 766 307 62 21 chr3 78460520 78460953 -81138830 - L1M2 LINE L1 -545 5752 5303 6 1183 496 224 9 9 chr3 78461599 78461707 -81138076 + MLT1E2 LTR MaLR 9 116 -511 6 1183 3641 115 9 5 chr3 78461708 78462277 -81137506 + L1VL4 LINE L1 219 789 -5513 6 1183 15105 108 25 3 chr3 78462269 78465304 -81134479 + L1_Mur1 LINE L1 1203 4294 -1592 6 1183 5458 154 50 1 chr3 78465307 78466265 -81133518 + Lx LINE L1 5642 6646 -8 6 1183 26 50 0 0 chr3 78466293 78466333 -81133450 + AT_rich Low_complexity Low_complexity 1 40 0 6 1183 289 331 97 0 chr3 78466354 78466478 -81133305 + MLT1E2 LTR MaLR 110 245 -382 6 1183 227 300 116 18 chr3 78467035 78467147 -81132636 + MLT1E2 LTR MaLR 501 623 -1 6 1183 271 182 13 13 chr3 78467443 78467521 -81132262 + (TA)n Simple_repeat Simple_repeat 2 79 0 6 1183 365 288 36 0 chr3 78467576 78467687 -81132096 + PB1D10 SINE Alu 1 115 -2 6 1183 262 350 25 41 chr3 78467998 78468120 -81131663 + MTEb LTR MaLR 23 142 -242 6 1183 6048 52 4 18 chr3 78468147 78468159 -81131624 - L1Md_F2 LINE L1 -12 6570 6559 6 1183 450 0 0 0 chr3 78468159 78468209 -81131574 + (TA)n Simple_repeat Simple_repeat 2 51 0 6 1183 6048 52 4 18 chr3 78468209 78468986 -81130797 - L1Md_F2 LINE L1 -24 6558 5793 6 1183 265 260 147 37 chr3 78469061 78469197 -81130586 + MTEb LTR MaLR 226 376 -3 6 1183 233 263 28 66 chr3 78469492 78469598 -81130185 + RMER15 LTR ERVL 406 507 -68 6 1183 837 280 38 0 chr3 78469597 78469783 -81130000 + ORR1D2 LTR MaLR 10 202 -168 6 1183 562 11 58 0 chr3 78470077 78470164 -81129619 + (GA)n Simple_repeat Simple_repeat 2 93 0 6 1183 1338 73 0 0 chr3 78470166 78470345 -81129438 + (GAGAA)n Simple_repeat Simple_repeat 1 179 0 6 1183 264 264 20 121 chr3 78470390 78470489 -81129294 - MLT1E2 LTR MaLR -9 618 530 6 1183 3158 25 19 54 chr3 78470678 78471102 -81128681 - L1Md_F3 LINE L1 -1 6583 6175 6 1183 1802 26 4 0 chr3 78471102 78471328 -81128455 + L1Md_F3 LINE L1 5763 5989 -595 6 1183 226 356 80 55 chr3 78471328 78471527 -81128256 - MLT1D LTR MaLR -301 204 1 6 1183 300 53 0 0 chr3 78471888 78471926 -81127857 + (TA)n Simple_repeat Simple_repeat 1 38 0 6 1183 186 43 0 0 chr3 78471999 78472022 -81127761 + (CA)n Simple_repeat Simple_repeat 2 24 0 6 1183 276 113 15 46 chr3 78472715 78472780 -81127003 + CT-rich Low_complexity Low_complexity 2 64 0 6 1183 1045 209 119 0 chr3 78472950 78473228 -81126555 + RMER1A Other Other 708 1018 -12 6 1183 870 326 11 17 chr3 78473249 78473611 -81126172 - Lx7 LINE L1 -397 7299 6940 6 1183 3465 204 77 16 chr3 78473609 78474702 -81125081 + L1_Mur3 LINE L1 2765 3924 -1956 6 1183 4539 199 14 2 chr3 78474702 78475685 -81124098 + Lx2B LINE L1 5904 6992 -66 6 1183 22 0 0 0 chr3 78475687 78475709 -81124074 + AT_rich Low_complexity Low_complexity 1 22 0 6 1183 1358 191 12 6 chr3 78475709 78476031 -81123752 + L1_Mur3 LINE L1 3912 4235 -1645 6 1183 640 110 5 0 chr3 78477088 78477194 -81122589 - ORR1A2 LTR MaLR -219 110 1 6 1183 213 182 23 0 chr3 78478736 78478780 -81121003 - L2a LINE L2 -4 3422 3378 6 1183 330 280 68 8 chr3 78479380 78479513 -81120270 + B1F SINE Alu 1 141 -8 6 1183 3842 43 0 0 chr3 78480078 78480564 -81119219 + L1Md_F2 LINE L1 5670 6155 -427 6 1183 665 57 9 0 chr3 78480564 78480670 -81119113 + L1Md_F2 LINE L1 6476 6582 -2 6 1183 1915 69 0 0 chr3 78482712 78482959 -81116824 - L1_Mus1 LINE L1 -1 6566 6320 6 1183 198 0 0 0 chr3 78483932 78483954 -81115829 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 6 1183 910 260 53 161 chr3 78484322 78484739 -81115044 - MTE2a LTR MaLR 0 379 8 6 1183 2125 144 26 101 chr3 78484958 78485375 -81114408 - ORR1B1 LTR MaLR -8 386 1 6 1183 1813 156 23 10 chr3 78486111 78486416 -81113367 - Lx3A LINE L1 -7 6974 6666 6 1183 339 374 63 17 chr3 78487855 78488029 -81111754 - LTR16A LTR ERVL -1 450 269 6 1183 387 385 31 6 chr3 78488044 78488206 -81111577 - LTR16A LTR ERVL -239 212 47 6 1183 509 321 162 61 chr3 78488234 78488579 -81111204 + MLT1B LTR MaLR 1 380 -10 6 1183 204 40 0 0 chr3 78488735 78488760 -81111023 + (CA)n Simple_repeat Simple_repeat 2 26 0 6 1183 519 17 0 0 chr3 78488760 78488819 -81110964 + (GA)n Simple_repeat Simple_repeat 2 61 0 6 1183 1654 195 13 30 chr3 78488951 78489347 -81110436 - L1Md_T LINE L1 0 6582 6194 6 1183 379 64 0 0 chr3 78489347 78489394 -81110389 + L1_Mus2 LINE L1 6173 6219 -347 6 1183 6511 31 0 7 chr3 78489760 78490534 -81109249 - L1Md_F2 LINE L1 0 6582 5814 6 1183 2316 189 11 36 chr3 78491831 78492280 -81107503 + RMER5 LTR ERV1 97 534 0 6 1183 426 270 40 0 chr3 78492837 78492989 -81106794 - L1M4c LINE L1 -6182 202 45 6 1183 306 242 200 0 chr3 78492994 78493089 -81106694 + MLT2B3 LTR ERVL 3 116 -438 6 1183 726 164 0 8 chr3 78493366 78493495 -81106288 - Lx9 LINE L1 -260 7384 7257 6 1183 616 325 98 59 chr3 78494118 78494505 -81105278 - MLT1A1 LTR MaLR 0 408 1 6 1183 185 336 70 9 chr3 78496516 78496630 -81103153 - L2a LINE L2 -10 3416 3296 6 1183 654 105 0 0 chr3 78496967 78497081 -81102702 + (TG)n Simple_repeat Simple_repeat 1 114 0 6 1183 432 342 62 0 chr3 78497082 78497228 -81102555 - B3A SINE B2 -34 164 10 6 1183 387 323 96 18 chr3 78497482 78498032 -81101751 - L1MC2 LINE L1 -9 6335 5734 6 1183 1468 207 37 10 chr3 78498050 78498348 -81101435 - RMER15 LTR ERVL 0 575 270 6 1183 4055 120 68 11 chr3 78498350 78498950 -81100833 - Lx3_Mus LINE L1 -467 6542 5907 6 1183 405 0 0 0 chr3 78498950 78498995 -81100788 + (TA)n Simple_repeat Simple_repeat 2 46 0 6 1183 4055 120 68 11 chr3 78498995 78499110 -81100673 - Lx3_Mus LINE L1 -1103 5906 5786 6 1183 893 126 0 0 chr3 78499110 78499245 -81100538 + RLTR13C2 LTR ERVK 1 135 -673 6 1183 2298 114 16 45 chr3 78499219 78499597 -81100186 + RLTR13C2 LTR ERVK 442 808 0 6 1183 3006 77 0 0 chr3 78499597 78500000 -81099783 - Lx3_Mus LINE L1 -92 5794 5392 6 1183 691 89 0 0 chr3 78500000 78500101 -81099682 - L1_Mur1 LINE L1 -495 5391 5291 1 1183 2964 97 16 25 chr3 78500104 78500550 -81099233 + Lx3A LINE L1 6540 6981 0 2 1183 180 0 0 0 chr3 78500562 78500582 -81099201 + (CAAAAA)n Simple_repeat Simple_repeat 2 21 0 3 1183 449 136 0 0 chr3 78500582 78500648 -81099135 - RMER15 LTR ERVL -287 288 223 4 1183 387 279 9 26 chr3 78500645 78500759 -81099024 - MT2A LTR ERVL -337 196 85 5 1183 691 259 0 0 chr3 78500770 78500917 -81098866 + B1_Mur4 SINE Alu 4 150 0 6 1183 387 42 55 27 chr3 78500929 78501002 -81098781 + (CAGAGA)n Simple_repeat Simple_repeat 2 76 0 7 1183 406 221 148 8 chr3 78501019 78501147 -81098636 - MT2A LTR ERVL -387 146 1 8 1183 4043 18 8 0 chr3 78501147 78501682 -81098101 - L1Md_T LINE L1 -652 5930 5392 9 1183 5626 33 0 0 chr3 78501682 78502345 -81097438 + L1Md_T LINE L1 5919 6581 -1 9 1183 225 286 122 10 chr3 78502463 78502668 -81097115 - L1M2 LINE L1 -761 5382 5155 1 1183 523 241 60 16 chr3 78503128 78503309 -81096474 - L1M2 LINE L1 -1100 5043 4837 1 1183 233 239 154 9 chr3 78503310 78503420 -81096363 - L1MC LINE L1 -1282 4864 4739 1 1183 184 30 61 0 chr3 78503502 78503535 -81096248 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 1 1183 2448 166 12 19 chr3 78504294 78504718 -81095065 + MTC LTR MaLR 1 421 0 1 1183 295 306 167 3 chr3 78505760 78506065 -81093718 + L1M2 LINE L1 5388 5742 -555 1 1183 1370 317 68 21 chr3 78506260 78507561 -81092222 - L1MA4 LINE L1 -404 5896 4488 1 1183 851 182 7 0 chr3 78507579 78507722 -81092061 + URR1A DNA MER1_type 2 145 -81 1 1183 243 162 0 0 chr3 78507722 78507759 -81092024 + B1_Mus1 SINE Alu 5 41 -107 1 1183 2237 137 3 0 chr3 78507759 78508095 -81091688 + Lx2 LINE L1 6660 6996 -1 1 1183 478 149 20 78 chr3 78508134 78508236 -81091547 + URR1A DNA MER1_type 130 225 -1 1 1183 1121 304 44 14 chr3 78508307 78508334 -81091449 - L1MA4 LINE L1 -1741 4399 4373 1 1183 266 0 29 0 chr3 78508334 78508368 -81091415 + (TTG)n Simple_repeat Simple_repeat 2 36 0 1 1183 1121 304 44 14 chr3 78508368 78509038 -81090745 - L1MA4 LINE L1 -1768 4372 3682 1 1183 645 69 0 0 chr3 78509575 78509662 -81090121 + (TG)n Simple_repeat Simple_repeat 1 87 0 2 1183 580 347 41 48 chr3 78510109 78510400 -81089383 - MER21B LTR ERV1 -558 305 17 2 1183 23 33 0 0 chr3 78510412 78510442 -81089341 + AT_rich Low_complexity Low_complexity 1 30 0 2 1183 593 89 115 9 chr3 78510834 78510947 -81088836 + Lx LINE L1 6523 6647 -7 2 147 490 290 163 25 chr3 78511892 78512168 -81087615 + LTR48B LTR ERV1 143 456 -188 2 1184 353 198 0 12 chr3 78512168 78512250 -81087533 + C-rich Low_complexity Low_complexity 6 86 0 2 1184 306 304 167 82 chr3 78512338 78512623 -81087160 - ORR1D2 LTR MaLR -7 363 49 2 1184 1371 184 78 101 chr3 78512623 78512805 -81086978 + ORR1C1 LTR MaLR 1 168 -210 2 1184 594 0 0 0 chr3 78512805 78512871 -81086912 + (TC)n Simple_repeat Simple_repeat 1 66 0 2 1184 1371 184 78 101 chr3 78512871 78513075 -81086708 + ORR1C1 LTR MaLR 169 378 0 2 1184 306 304 167 82 chr3 78513075 78513119 -81086664 - ORR1D2 LTR MaLR -322 48 6 2 1184 1621 271 68 15 chr3 78513590 78514409 -81085374 + Lx LINE L1 17 697 -7031 2 1184 2594 209 42 62 chr3 78514429 78515324 -81084459 + Lx LINE L1 563 1432 -4448 2 1184 189 74 0 0 chr3 78515324 78515351 -81084432 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3 1184 2163 164 45 9 chr3 78515351 78515608 -81084175 + Lx LINE L1 1433 1685 -4195 2 1184 8760 162 36 92 chr3 78515624 78519164 -81080619 + Lx LINE L1 3331 6650 -4 2 1184 6369 201 53 108 chr3 78519170 78521341 -81078442 + Lx6 LINE L1 5284 7460 0 3 1184 370 364 0 8 chr3 78521502 78521621 -81078162 + RSINE1 SINE B4 4 121 -44 3 1184 486 0 0 0 chr3 78521621 78521675 -81078108 + (TC)n Simple_repeat Simple_repeat 2 55 0 3 1184 279 0 0 0 chr3 78521675 78521705 -81078078 + (TG)n Simple_repeat Simple_repeat 2 32 0 3 1184 276 30 0 0 chr3 78521737 78521770 -81078013 + (TA)n Simple_repeat Simple_repeat 2 34 0 3 1184 32 0 0 0 chr3 78521774 78521806 -81077977 + AT_rich Low_complexity Low_complexity 1 32 0 3 1184 346 385 39 56 chr3 78521872 78522103 -81077680 + B4 SINE B4 66 292 0 3 1184 350 322 15 53 chr3 78522450 78522581 -81077202 + RSINE1 SINE B4 12 137 -28 3 1184 198 0 0 0 chr3 78522598 78522620 -81077163 + (GA)n Simple_repeat Simple_repeat 2 23 0 3 1184 300 333 111 26 chr3 78522647 78522918 -81076865 + L1M5 LINE L1 5023 5316 -830 4 1184 2251 118 36 0 chr3 78523146 78523510 -81076273 + L1VL4 LINE L1 427 803 -5499 4 1184 333 0 0 0 chr3 78523510 78523547 -81076236 + (CA)n Simple_repeat Simple_repeat 2 38 0 4 1184 1851 40 0 0 chr3 78523547 78523774 -81076009 + L1Md_F2 LINE L1 5360 5586 -297 4 1184 8186 44 1 0 chr3 78523775 78524757 -81075026 + L1Md_F2 LINE L1 5588 6570 -12 4 1184 21985 159 28 17 chr3 78524757 78530182 -81069601 + Lx LINE L1 1166 6654 0 4 1184 505 273 50 16 chr3 78530205 78530467 -81069316 - L1M2 LINE L1 -1847 4000 3723 4 1184 236 316 58 27 chr3 78532136 78532360 -81067423 - Charlie2b DNA MER1_type -185 2597 2367 4 1184 423 98 0 0 chr3 78532591 78532652 -81067131 + (TTTC)n Simple_repeat Simple_repeat 3 63 0 4 1184 1177 68 0 0 chr3 78532666 78532814 -81066969 - B1_Mus1 SINE Alu 0 148 1 4 1184 805 112 0 8 chr3 78532814 78532940 -81066843 - B2_Mm2 SINE B2 -2 193 69 4 1184 498 243 100 60 chr3 78533038 78533437 -81066346 + L1MDa LINE L1 931 1345 -5288 5 1184 373 279 194 6 chr3 78533789 78533969 -81065814 + L1MDa LINE L1 1408 1621 -5012 5 1184 452 281 8 23 chr3 78534069 78534200 -81065583 - ID_B1 SINE B4 -2 222 94 5 1184 328 26 0 0 chr3 78534280 78534318 -81065465 - HAL1-3A_ME LINE L1 -846 2012 1975 5 1184 615 181 0 0 chr3 78534318 78534489 -81065294 + (TG)n Simple_repeat Simple_repeat 1 171 0 5 1184 248 146 191 53 chr3 78534547 78534641 -81065142 + L1MDa LINE L1 1836 1942 -4691 5 1184 289 350 49 0 chr3 78534717 78534840 -81064943 + RCHARR1 DNA MER1_type 1 129 -845 5 1184 1544 160 155 7 chr3 78535091 78535381 -81064402 + ORR1B1 LTR MaLR 62 394 0 5 1184 3999 61 0 18 chr3 78535389 78535893 -81063890 + L1Md_F2 LINE L1 6074 6568 -14 5 1184 1078 268 67 35 chr3 78536058 78536308 -81063475 + Lx7 LINE L1 6826 7083 -613 5 1184 2059 138 22 0 chr3 78536308 78536628 -81063155 + ORR1A2 LTR MaLR 1 327 0 5 1184 1078 268 67 35 chr3 78536628 78536752 -81063031 + Lx7 LINE L1 7084 7212 -484 5 1184 330 275 107 16 chr3 78536817 78536939 -81062844 - Lx5 LINE L1 -771 6279 6147 5 1184 1655 238 48 6 chr3 78536929 78537415 -81062368 + Lx5 LINE L1 6506 7052 -6 6 1184 1382 251 76 74 chr3 78537460 78537984 -81061799 + RCHARR1 DNA MER1_type 151 675 -299 5 1184 594 282 88 10 chr3 78538014 78538218 -81061565 + Lx8 LINE L1 7113 7332 -141 6 1184 412 210 159 16 chr3 78538327 78538453 -81061330 + RCHARR1 DNA MER1_type 654 797 -177 5 1184 421 312 40 34 chr3 78538480 78538656 -81061127 + MER5A DNA MER1_type 13 189 0 6 1184 420 267 8 8 chr3 78538817 78538938 -81060845 - Lx9 LINE L1 -250 7394 7274 6 1184 567 0 0 0 chr3 78538945 78539008 -81060775 + (CTG)n Simple_repeat Simple_repeat 1 63 0 6 1184 334 165 62 55 chr3 78539014 78539142 -81060641 + Lx9 LINE L1 7514 7642 -2 6 1184 21 0 0 0 chr3 78539142 78539163 -81060620 + AT_rich Low_complexity Low_complexity 1 21 0 6 1184 234 0 0 0 chr3 78540140 78540166 -81059617 + (A)n Simple_repeat Simple_repeat 1 26 0 6 1184 401 314 84 42 chr3 78540167 78540333 -81059450 + MLT1F1 LTR MaLR 193 365 -204 6 1184 248 299 93 0 chr3 78540465 78540562 -81059221 - Tigger7 DNA MER2_type -1812 679 574 6 1184 21 0 0 0 chr3 78540901 78540922 -81058861 + AT_rich Low_complexity Low_complexity 1 21 0 7 1184 325 319 42 35 chr3 78542078 78542221 -81057562 + MLT1F1 LTR MaLR 406 549 0 6 1184 664 275 98 26 chr3 78542250 78542444 -81057339 + MTE2b LTR MaLR 1 208 -171 7 1184 333 228 123 39 chr3 78542465 78542620 -81057163 + L1M5 LINE L1 4170 4337 -1809 7 1184 240 132 26 0 chr3 78542791 78542829 -81056954 + tRNA-Arg-AGA tRNA tRNA 1 39 -37 7 1184 898 289 43 9 chr3 78542864 78543286 -81056497 + L1M5 LINE L1 4497 4932 -1214 7 1184 560 273 199 11 chr3 78543325 78543681 -81056102 + Lx7 LINE L1 7254 7676 -20 7 1184 359 354 62 18 chr3 78543701 78543956 -81055827 + L1M5 LINE L1 4987 5252 -894 7 1184 306 0 0 0 chr3 78544832 78544866 -81054917 + (A)n Simple_repeat Simple_repeat 1 34 0 7 1184 1226 169 0 4 chr3 78544895 78545127 -81054656 + L1Md_T LINE L1 107 337 -6282 7 1184 1399 49 6 0 chr3 78545119 78545302 -81054481 + L1Md_T LINE L1 673 856 -5763 7 1184 2122 113 30 21 chr3 78545302 78545636 -81054147 + IAPLTR1a_Mm LTR ERVK 1 337 0 7 1184 12724 39 93 17 chr3 78545636 78548487 -81051296 + IAPEz-int LTR ERVK 8 3076 -3405 7 1184 6266 60 13 11 chr3 78548473 78549321 -81050462 + IAPEz-int LTR ERVK 5630 6479 -2 7 1184 2122 113 30 21 chr3 78549323 78549657 -81050126 + IAPLTR1a_Mm LTR ERVK 1 337 0 7 1184 33913 44 0 0 chr3 78549657 78554414 -81045369 + L1Md_T LINE L1 736 5589 -297 7 1184 9020 6 0 0 chr3 78554414 78555410 -81044373 + L1Md_T LINE L1 5590 6585 0 7 1184 6135 63 0 1 chr3 78555414 78556192 -81043591 + L1Md_F2 LINE L1 5800 6576 -6 7 1184 1311 263 67 53 chr3 78556213 78556963 -81042820 + L1MA8 LINE L1 5317 6076 -224 7 1184 193 279 6 11 chr3 78557460 78557634 -81042149 + (CATATA)n Simple_repeat Simple_repeat 4 176 0 8 1184 2045 147 66 28 chr3 78557916 78558280 -81041503 + ORR1C2 LTR MaLR 5 382 -2 8 1184 445 208 10 10 chr3 78558567 78558664 -81041119 + RMER13B LTR ERVK 812 908 0 8 1184 1720 222 31 0 chr3 78558803 78559154 -81040629 - ORR1D1 LTR MaLR -8 366 5 8 1184 531 0 0 0 chr3 78559520 78559579 -81040204 + (CA)n Simple_repeat Simple_repeat 1 59 0 8 1184 636 146 171 0 chr3 78560790 78560913 -81038870 + B1_Mur4 SINE Alu 2 145 -5 8 1184 1222 78 6 11 chr3 78560949 78561130 -81038653 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 8 1184 180 0 0 0 chr3 78561171 78561191 -81038592 + (CA)n Simple_repeat Simple_repeat 1 20 0 8 1184 205 190 12 60 chr3 78563872 78563956 -81035827 + (TTTG)n Simple_repeat Simple_repeat 1 80 0 8 1184 231 296 144 27 chr3 78564872 78564983 -81034800 - MER94 DNA AcHobo -5 129 6 8 1184 575 283 62 24 chr3 78565540 78565830 -81033953 - L1MA4 LINE L1 -383 5917 5617 9 1184 3248 208 40 10 chr3 78565840 78566560 -81033223 + Lx7 LINE L1 6538 7279 -417 9 1184 246 62 0 0 chr3 78566654 78566686 -81033097 + (TG)n Simple_repeat Simple_repeat 1 32 0 9 1184 255 31 0 0 chr3 78566759 78566791 -81032992 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 9 1184 447 252 23 8 chr3 78566797 78566929 -81032854 + Lx7 LINE L1 7563 7696 0 9 1184 565 289 90 61 chr3 78567248 78567312 -81032471 - L1M2 LINE L1 -3010 3133 3066 9 1184 1129 95 0 0 chr3 78567312 78567460 -81032323 + B1_Mus1 SINE Alu 1 148 0 9 1184 270 0 0 0 chr3 78567464 78567494 -81032289 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 9 1184 565 286 75 53 chr3 78567494 78567922 -81031861 - L1M2 LINE L1 -3078 3065 2618 9 1184 392 158 13 0 chr3 78567931 78568007 -81031776 + CT-rich Low_complexity Low_complexity 3 79 0 9 1184 5110 36 0 1 chr3 78568136 78568815 -81030968 - L1Md_F2 LINE L1 -362 6220 5543 9 1184 2787 79 8 10 chr3 78568815 78569199 -81030584 + L1Md_F2 LINE L1 6200 6582 0 9 1184 1164 82 0 0 chr3 78569573 78569720 -81030063 + B1_Mus1 SINE Alu 1 147 -1 9 1184 439 278 193 69 chr3 78569795 78570317 -81029466 - MER67C LTR ERV1 -4 510 4 1 1184 21 0 0 0 chr3 78570429 78570450 -81029333 + AT_rich Low_complexity Low_complexity 1 21 0 1 1184 360 334 38 35 chr3 78570560 78570762 -81029021 - MLT1B LTR MaLR 0 390 177 1 1184 1689 226 86 43 chr3 78570798 78571195 -81028588 + MTD LTR MaLR 4 417 -2 1 1184 317 316 80 14 chr3 78571195 78571326 -81028457 - MLT1B LTR MaLR -200 174 35 1 1184 1178 133 83 28 chr3 78571782 78571998 -81027785 + RMER6B LTR ERVK 1 228 -233 1 1184 675 0 0 0 chr3 78572040 78572115 -81027668 + (TC)n Simple_repeat Simple_repeat 1 75 0 1 1184 262 302 61 69 chr3 78572115 78572346 -81027437 + RMER17C LTR ERVK 150 378 -32 1 1184 1048 166 0 72 chr3 78572350 78572571 -81027212 + RMER6B LTR ERVK 257 461 0 1 1184 268 88 0 34 chr3 78573094 78573120 -81026663 + (TTTTTG)n Simple_repeat Simple_repeat 4 28 0 1 1184 198 0 0 0 chr3 78573120 78573142 -81026641 + (TGG)n Simple_repeat Simple_repeat 1 22 0 1 1184 268 88 0 34 chr3 78573142 78573174 -81026609 + (TTTTTG)n Simple_repeat Simple_repeat 2 33 0 1 1184 1224 54 0 0 chr3 78573175 78573323 -81026460 - B1_Mus1 SINE Alu 0 148 1 1 1184 429 267 55 0 chr3 78574010 78574156 -81025627 + L1_Mur2 LINE L1 900 1053 -6675 1 1184 39440 8 1 1 chr3 78574168 78581158 -81018625 - L1Md_A LINE L1 0 6582 1 1 1184 5020 190 73 25 chr3 78581167 78582204 -81017579 + L1_Mur2 LINE L1 990 2057 -3823 1 1184 270 0 0 0 chr3 78582204 78582234 -81017549 + (TC)n Simple_repeat Simple_repeat 1 30 0 1 1184 423 0 0 0 chr3 78582234 78582280 -81017503 + (CA)n Simple_repeat Simple_repeat 1 47 0 1 1184 5020 179 79 21 chr3 78582280 78582536 -81017247 + L1_Mur2 LINE L1 2058 2350 -3530 1 1184 186 43 0 0 chr3 78582536 78582559 -81017224 + (GA)n Simple_repeat Simple_repeat 2 24 0 1 1184 5020 179 79 21 chr3 78582559 78582835 -81016948 + L1_Mur2 LINE L1 2351 2641 -3239 1 1184 351 0 0 0 chr3 78582835 78582874 -81016909 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 1184 551 327 36 49 chr3 78582886 78583111 -81016672 - RMER12 LTR ERVK 0 1322 1101 1 1184 422 20 0 0 chr3 78583266 78583317 -81016466 - L1_Mus2 LINE L1 -878 5688 5638 1 1184 6277 78 18 26 chr3 78583317 78584206 -81015577 + L1_Mus3 LINE L1 5748 6629 -9 1 1184 271 397 14 56 chr3 78584328 78584472 -81015311 + RSINE1 SINE B4 27 164 -1 1 1184 4636 116 16 88 chr3 78584563 78585430 -81014353 - RLTR22_Mur LTR ERVK -1043 805 1 1 1184 465 137 0 0 chr3 78585433 78585506 -81014277 + L1_Mur3 LINE L1 2663 2735 -3145 1 1184 3118 189 41 26 chr3 78585504 78586325 -81013458 + L1_Mur3 LINE L1 3066 3899 -1981 1 1184 2014 177 40 20 chr3 78586316 78586765 -81013018 + L1_Mur3 LINE L1 4325 4782 -1098 1 1184 5543 184 59 13 chr3 78587073 78588687 -81011096 + L1_Mur2 LINE L1 882 2571 -3306 1 1184 1727 278 79 27 chr3 78588689 78589040 -81010743 + Lx6 LINE L1 6557 6923 -537 1 1184 1284 89 0 0 chr3 78589040 78589220 -81010563 + (GA)n Simple_repeat Simple_repeat 1 180 0 1 1184 1727 278 79 27 chr3 78589220 78589503 -81010280 + Lx6 LINE L1 6924 7224 -236 1 1184 432 0 0 0 chr3 78589829 78589877 -81009906 + (TTTG)n Simple_repeat Simple_repeat 1 48 0 1 1184 339 316 98 21 chr3 78589935 78590129 -81009654 - MIRb SINE MIR -10 258 50 1 1184 348 355 80 83 chr3 78590221 78590571 -81009212 + ORR1E LTR MaLR 11 359 0 1 1184 860 278 187 7 chr3 78591562 78591968 -81007815 - MER31A LTR ERV1 -1 484 6 1 1184 22 0 0 0 chr3 78592362 78592384 -81007399 + AT_rich Low_complexity Low_complexity 1 22 0 1 1184 25 31 0 0 chr3 78592816 78592848 -81006935 + AT_rich Low_complexity Low_complexity 1 32 0 1 1184 264 333 0 22 chr3 78593961 78594053 -81005730 + PB1 SINE Alu 18 107 -20 1 1184 244 241 0 0 chr3 78594053 78594111 -81005672 + A-rich Low_complexity Low_complexity 1 58 0 1 1184 684 0 0 0 chr3 78594717 78594793 -81004990 + (TC)n Simple_repeat Simple_repeat 1 76 0 1 1184 230 330 172 21 chr3 78594794 78594986 -81004797 - MLT1K LTR MaLR -218 377 157 1 1184 240 172 61 30 chr3 78595875 78595941 -81003842 - L2a LINE L2 -94 3332 3265 1 1184 185 255 0 21 chr3 78596006 78596054 -81003729 + L2 LINE L2 1204 1250 -2169 1 1184 321 135 0 0 chr3 78596739 78596791 -81002992 + (TG)n Simple_repeat Simple_repeat 2 53 0 1 1184 672 244 10 62 chr3 78597019 78597211 -81002572 + B3A SINE B2 1 182 -16 1 1184 338 134 0 15 chr3 78597211 78597279 -81002504 + (CA)n Simple_repeat Simple_repeat 1 67 0 1 1184 903 221 14 104 chr3 78597279 78597491 -81002292 - ORR1D1 LTR MaLR 0 374 181 1 1184 198 91 0 0 chr3 78597491 78597524 -81002259 + (CAGA)n Simple_repeat Simple_repeat 2 34 0 1 1184 903 294 56 1752 chr3 78597524 78597598 -81002185 - ORR1D1 LTR MaLR -194 180 49 1 1184 240 280 0 15 chr3 78597608 78597742 -81002041 + (CAGA)n Simple_repeat Simple_repeat 1 132 0 1 1184 1071 177 16 0 chr3 78597743 78597929 -81001854 - ORR1D1 LTR MaLR -185 189 1 1 1184 1820 117 21 3 chr3 78598101 78598384 -81001399 - Lx3_Mus LINE L1 -8 7001 6714 1 1184 472 314 29 81 chr3 78598558 78598731 -81001052 - RSINE1 SINE B4 0 165 2 1 1184 386 311 128 26 chr3 78598731 78598957 -81000826 - LTR73 LTR ERV1 -293 279 30 1 1184 285 312 21 0 chr3 78599406 78599502 -81000281 - MER34A LTR ERV1 -65 477 380 1 1184 863 76 15 0 chr3 78599724 78599856 -80999927 + (GAAAA)n Simple_repeat Simple_repeat 2 135 0 1 1184 2507 149 153 44 chr3 78599921 78600387 -80999396 - RMER19C LTR ERVK -2 609 142 1 1184 2932 79 15 2 chr3 78600387 78600782 -80999001 - MTB LTR MaLR 0 400 1 1 1184 522 0 0 0 chr3 78600791 78600849 -80998934 + (TC)n Simple_repeat Simple_repeat 2 59 0 1 1184 2507 149 153 44 chr3 78600849 78600921 -80998862 - RMER19C LTR ERVK -513 98 2 1 1184 780 148 57 0 chr3 78601061 78601183 -80998600 + B3 SINE B2 1 129 -87 1 1184 286 325 50 17 chr3 78601304 78601423 -80998360 - MER34A LTR ERV1 -329 242 120 1 1184 288 0 0 0 chr3 78602284 78602316 -80997467 + (TG)n Simple_repeat Simple_repeat 2 33 0 1 1184 493 284 0 75 chr3 78602359 78602519 -80997264 - B3A SINE B2 -47 151 4 1 1184 1186 217 203 14 chr3 78603690 78604040 -80995743 - MTD LTR MaLR -2 417 2 1 1184 1663 282 92 74 chr3 78604924 78605761 -80994022 + Lx8 LINE L1 6373 7224 -249 1 1184 2948 77 39 2 chr3 78606004 78606410 -80993373 + BGLII LTR ERVK 1 421 0 1 1184 679 273 16 48 chr3 78606552 78606728 -80993055 - B3 SINE B2 -3 190 20 1 1184 803 255 39 5 chr3 78606737 78606942 -80992841 - B3 SINE B2 -3 213 2 1 1184 447 19 0 0 chr3 78607130 78607182 -80992601 + (TG)n Simple_repeat Simple_repeat 2 53 0 1 1184 587 240 31 8 chr3 78607196 78607326 -80992457 - RSINE1 SINE B4 -30 135 3 1 1184 6272 31 4 0 chr3 78607419 78608171 -80991612 - L1Md_F3 LINE L1 -14 6570 5816 1 1184 279 0 0 0 chr3 78608279 78608310 -80991473 + (CA)n Simple_repeat Simple_repeat 1 31 0 1 1184 265 363 37 0 chr3 78609480 78609615 -80990168 + B1F SINE Alu 2 141 -8 1 1184 276 281 10 136 chr3 78610493 78610594 -80989189 + MLT1A0 LTR MaLR 6 93 -272 1 1184 1452 251 57 15 chr3 78610594 78610983 -80988800 - MTD LTR MaLR 0 419 15 1 1184 323 268 41 0 chr3 78611094 78611191 -80988592 + MLT1A0 LTR MaLR 265 365 0 1 1184 351 323 128 15 chr3 78611518 78611713 -80988070 + ORR1E LTR MaLR 1 217 -142 1 1184 3434 239 104 24 chr3 78612096 78613057 -80986726 + Lx8 LINE L1 6332 7369 -104 1 1184 318 106 0 0 chr3 78613112 78613159 -80986624 + (TA)n Simple_repeat Simple_repeat 1 47 0 1 1184 618 254 49 87 chr3 78613286 78613471 -80986312 + B3A SINE B2 21 198 0 1 1184 3372 43 8 8 chr3 78614080 78614476 -80985307 - MTA_Mm LTR MaLR 0 396 1 1 1184 512 316 74 0 chr3 78616497 78616794 -80982989 + MER33 DNA MER1_type 5 323 -1 1 1184 25434 11 0 0 chr3 78617097 78619949 -80979834 + L1Md_A LINE L1 2735 5586 -297 1 1184 9531 7 0 0 chr3 78619949 78620944 -80978839 + L1Md_A LINE L1 5587 6581 -1 1 1184 24 53 0 0 chr3 78620947 78620985 -80978798 + AT_rich Low_complexity Low_complexity 1 38 0 1 1184 221 271 0 0 chr3 78621080 78621139 -80978644 + (TA)n Simple_repeat Simple_repeat 2 60 0 1 1184 39284 7 0 2 chr3 78621210 78627215 -80972568 + L1Md_T LINE L1 1 5586 -297 1 1184 9444 13 0 0 chr3 78627215 78628211 -80971572 + L1Md_T LINE L1 5587 6582 0 1 1184 270 225 81 40 chr3 78628216 78628290 -80971493 + ID_B1 SINE B4 80 156 -68 1 1184 309 224 125 0 chr3 78628225 78628322 -80971461 + B1F1 SINE Alu 6 117 0 1 1184 7685 4 0 0 chr3 78628325 78629125 -80970658 + L1Md_A LINE L1 5783 6582 0 1 1184 322 235 86 0 chr3 78631422 78631503 -80968280 - BC1_Mm scRNA scRNA -58 94 7 1 1184 393 241 52 35 chr3 78631967 78632083 -80967700 + RSINE1 SINE B4 4 121 -44 1 1184 342 0 0 0 chr3 78632085 78632123 -80967660 + (CA)n Simple_repeat Simple_repeat 2 39 0 1 1184 24 32 0 0 chr3 78632138 78632169 -80967614 + AT_rich Low_complexity Low_complexity 1 31 0 1 1184 297 329 36 12 chr3 78632201 78632220 -80967563 - ID_B1 SINE B4 -128 96 12 1 1184 308 297 0 0 chr3 78632220 78632284 -80967499 - ID4_ SINE ID -8 75 12 1 1184 307 304 20 55 chr3 78632747 78632893 -80966890 + L1MA6 LINE L1 6159 6299 -1 1 1184 350 286 0 0 chr3 78632919 78632996 -80966787 + BC1_Mm scRNA scRNA 7 83 -69 1 1184 546 231 20 33 chr3 78634529 78634681 -80965102 + RMER5 LTR ERV1 369 518 -16 1 1184 933 266 49 45 chr3 78634772 78635059 -80964724 + B4 SINE B4 1 288 -4 1 1184 423 0 0 0 chr3 78635080 78635127 -80964656 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 1 1184 8287 48 0 2 chr3 78635253 78636287 -80963496 - L1Md_F2 LINE L1 -12 6570 5539 1 1184 252 272 42 103 chr3 78636313 78636526 -80963257 - YREP_Mm Unknown Unknown -1407 405 206 1 1184 525 262 0 96 chr3 78636406 78636541 -80963242 + ID_B1 SINE B4 87 208 -16 1 1184 450 0 0 0 chr3 78636701 78636751 -80963032 + (TG)n Simple_repeat Simple_repeat 2 51 0 1 1184 256 320 100 0 chr3 78636768 78636868 -80962915 - ID_B1 SINE B4 -34 190 81 1 1184 24 53 0 0 chr3 78637018 78637056 -80962727 + AT_rich Low_complexity Low_complexity 1 38 0 1 1184 3148 57 0 3 chr3 78637275 78637647 -80962136 - L1_Mus1 LINE L1 0 6567 6197 1 1184 3617 61 0 0 chr3 78637647 78638091 -80961692 + L1_Mus1 LINE L1 5712 6155 -412 1 1184 823 274 37 20 chr3 78638563 78638809 -80960974 + Lx9 LINE L1 6445 6694 -950 1 1184 343 128 46 11 chr3 78639188 78639275 -80960508 + (TA)n Simple_repeat Simple_repeat 2 91 0 2 1184 567 0 0 0 chr3 78639621 78639684 -80960099 + (TC)n Simple_repeat Simple_repeat 2 64 0 2 1184 684 139 31 4 chr3 78639684 78639947 -80959836 + (TG)n Simple_repeat Simple_repeat 1 270 0 2 1184 1029 51 5 43 chr3 78639960 78640146 -80959637 + (TG)n Simple_repeat Simple_repeat 2 180 0 2 1184 812 232 7 0 chr3 78640162 78640317 -80959466 - B3A SINE B2 -42 156 1 2 1184 307 292 14 0 chr3 78641567 78641639 -80958144 + ID4_ SINE ID 3 75 -8 2 1184 432 0 0 0 chr3 78642286 78642334 -80957449 + (TG)n Simple_repeat Simple_repeat 2 49 0 2 18 480 294 188 43 chr3 78642749 78643308 -80956475 + L1MC4 LINE L1 6771 7410 -632 2 1185 583 264 26 51 chr3 78643534 78643690 -80956093 + RSINE1 SINE B4 2 153 -12 2 1185 364 104 30 0 chr3 78643695 78643762 -80956021 + (CA)n Simple_repeat Simple_repeat 2 70 0 2 1185 317 148 16 32 chr3 78643803 78643866 -80955917 + PB1D10 SINE Alu 56 117 0 2 1185 335 304 105 26 chr3 78644109 78644261 -80955522 + L1MCb LINE L1 3 166 -5879 2 1185 663 182 66 0 chr3 78644278 78644415 -80955368 + Lx9 LINE L1 7319 7464 -180 2 1185 189 0 0 0 chr3 78644420 78644441 -80955342 + (CA)n Simple_repeat Simple_repeat 2 22 0 2 1185 975 239 96 8 chr3 78644479 78644719 -80955064 - ORR1E LTR MaLR -96 263 3 2 1185 361 242 63 1 chr3 78644732 78644837 -80954946 + L1MCb LINE L1 1100 1293 -5458 2 1185 350 306 43 43 chr3 78645736 78645876 -80953907 + B1F SINE Alu 10 149 0 2 1185 662 279 28 75 chr3 78646145 78646397 -80953386 + 7SK RNA RNA 1 240 -91 2 1185 199 93 47 0 chr3 78646984 78647027 -80952756 + (TA)n Simple_repeat Simple_repeat 1 45 0 2 1185 384 231 53 0 chr3 78647038 78647207 -80952576 + (TA)n Simple_repeat Simple_repeat 2 179 0 2 1185 342 0 0 0 chr3 78647802 78647840 -80951943 + (TG)n Simple_repeat Simple_repeat 2 39 0 2 1185 480 262 147 12 chr3 78647848 78648018 -80951765 + Ricksha_c DNA MuDR 575 767 -1281 2 1185 520 308 65 42 chr3 78649868 78650060 -80949723 + B4A SINE B4 70 270 -22 2 1185 204 67 0 0 chr3 78650060 78650090 -80949693 + (CA)n Simple_repeat Simple_repeat 2 31 0 2 1185 520 308 65 42 chr3 78650090 78650114 -80949669 + B4A SINE B4 271 291 -1 2 1185 385 149 149 0 chr3 78650824 78650898 -80948885 + MT2A LTR ERVL 4 88 -445 2 1185 2908 129 130 71 chr3 78650917 78651511 -80948272 - Lx4B LINE L1 0 7058 6430 2 1185 1745 152 146 24 chr3 78651512 78651889 -80947894 + Lx5 LINE L1 5989 6411 -639 2 1185 941 238 14 24 chr3 78651889 78652100 -80947683 + MT2A LTR ERVL 257 465 -68 2 1185 618 99 0 0 chr3 78652100 78652191 -80947592 + (TCTCCC)n Simple_repeat Simple_repeat 2 92 0 2 1185 298 338 87 24 chr3 78652302 78652508 -80947275 - MIRb SINE MIR -7 261 43 2 1185 190 206 16 16 chr3 78654028 78654092 -80945691 + GA-rich Low_complexity Low_complexity 1 64 0 2 1185 218 325 184 0 chr3 78654488 78654694 -80945089 + L2 LINE L2 2669 2912 -507 2 1185 3439 229 46 32 chr3 78655142 78655975 -80943808 + Lx6 LINE L1 5931 6774 -686 2 1185 4986 144 39 11 chr3 78655969 78657190 -80942593 + L1Md_F2 LINE L1 102 1361 -4522 2 1185 6397 6 0 0 chr3 78657189 78657892 -80941891 + L1Md_A LINE L1 4884 5586 -297 2 1185 9291 19 0 0 chr3 78657892 78658888 -80940895 + L1Md_A LINE L1 5587 6582 0 2 1185 29882 72 48 0 chr3 78658948 78662993 -80936790 + L1Md_F2 LINE L1 1347 5586 -297 2 1185 8397 54 0 17 chr3 78662994 78663992 -80935791 + L1Md_F2 LINE L1 5588 6568 -14 2 1185 2411 245 17 19 chr3 78663992 78664520 -80935263 + Lx6 LINE L1 6764 7290 -170 2 1185 228 67 0 0 chr3 78664524 78664554 -80935229 + (TGAA)n Simple_repeat Simple_repeat 2 31 0 2 1185 1851 231 57 93 chr3 78665605 78666129 -80933654 - RLTR18B LTR ERVK -7 505 1 2 1185 257 343 65 18 chr3 78666930 78667099 -80932684 + MERVL_2A-int LTR ERVL 4248 4424 -1337 2 1185 24 0 0 0 chr3 78667977 78668001 -80931782 + AT_rich Low_complexity Low_complexity 1 24 0 2 1185 367 376 63 15 chr3 78669602 78669940 -80929843 + L2a LINE L2 2771 3123 -303 2 1185 305 260 108 20 chr3 78670981 78671083 -80928700 + L1MB1 LINE L1 6058 6168 0 2 1185 249 33 0 0 chr3 78672021 78672051 -80927732 + (CA)n Simple_repeat Simple_repeat 2 31 0 2 1185 315 0 0 0 chr3 78672540 78672575 -80927208 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 2 1185 836 280 51 8 chr3 78673140 78673374 -80926409 + MTD LTR MaLR 29 272 -147 2 1185 778 265 78 0 chr3 78673551 78673755 -80926028 + Lx8 LINE L1 6583 6802 -671 2 1185 476 262 124 0 chr3 78673778 78673923 -80925860 + B3A SINE B2 8 170 -28 2 1185 233 109 22 0 chr3 78673928 78673974 -80925809 + (CA)n Simple_repeat Simple_repeat 2 48 0 2 1185 814 339 67 32 chr3 78673992 78674467 -80925316 + Lx8 LINE L1 6801 7292 -181 2 1185 1619 228 12 9 chr3 78674982 78675323 -80924460 + RMER1B Other Other 1 342 -724 2 1185 2095 122 65 60 chr3 78675310 78675710 -80924073 + RMER1B Other Other 664 1065 -1 2 1185 282 29 0 0 chr3 78675947 78675982 -80923801 + (TTG)n Simple_repeat Simple_repeat 2 36 0 2 1185 230 231 103 0 chr3 78676294 78676372 -80923411 - MTE2a LTR MaLR -9 370 285 2 1185 22 0 0 0 chr3 78677089 78677111 -80922672 + AT_rich Low_complexity Low_complexity 1 22 0 2 1185 183 0 24 98 chr3 78677430 78677471 -80922312 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 2 1185 473 208 98 16 chr3 78677475 78677597 -80922186 - B1_Mur1 SINE Alu -7 142 11 2 1185 1106 262 79 40 chr3 78677840 78678097 -80921686 + ORR1D2 LTR MaLR 1 269 -101 2 1185 1691 169 11 199 chr3 78678097 78678570 -80921213 + ORR1C2 LTR MaLR 1 384 0 2 1185 1106 262 79 40 chr3 78678570 78678666 -80921117 + ORR1D2 LTR MaLR 270 368 -2 2 1185 3566 201 103 42 chr3 78678699 78678832 -80920951 - RMER1B Other Other -2 1064 931 2 1185 853 83 0 15 chr3 78678832 78678966 -80920817 + (GGAA)n Simple_repeat Simple_repeat 3 134 0 2 1185 3566 201 103 42 chr3 78678966 78679676 -80920107 - RMER1B Other Other -136 930 170 2 1185 4984 73 9 1 chr3 78679687 78680341 -80919442 - L1_Mus3 LINE L1 -1 6637 5979 2 1185 651 118 0 10 chr3 78680341 78680444 -80919339 - RLTR27 LTR ERVK 0 309 208 2 1185 270 136 0 0 chr3 78680453 78680497 -80919286 + (TGAA)n Simple_repeat Simple_repeat 1 44 0 2 1185 242 350 50 0 chr3 78681313 78681413 -80918370 + MIR3 SINE MIR 91 195 -13 2 1185 402 74 0 0 chr3 78681802 78681856 -80917927 + (TTTTC)n Simple_repeat Simple_repeat 2 55 0 2 1185 282 123 0 0 chr3 78682153 78682210 -80917573 + (CAGA)n Simple_repeat Simple_repeat 4 60 0 2 1185 2574 166 57 14 chr3 78682379 78682868 -80916915 + Lx4B LINE L1 6543 7052 -6 2 1185 3415 20 13 0 chr3 78682972 78683363 -80916420 + MTA_Mm LTR MaLR 1 396 0 2 1185 234 136 0 0 chr3 78683398 78683442 -80916341 + (A)n Simple_repeat Simple_repeat 1 44 0 2 1185 197 304 85 39 chr3 78683587 78683717 -80916066 + MIRb SINE MIR 20 155 -113 2 1185 25 31 0 0 chr3 78684583 78684615 -80915168 + AT_rich Low_complexity Low_complexity 1 32 0 2 1185 291 336 36 7 chr3 78686718 78686856 -80912927 - MIR SINE MIR -34 228 87 2 1185 238 306 35 0 chr3 78686925 78687010 -80912773 + MLT1I LTR MaLR 90 177 -234 2 1185 360 0 0 0 chr3 78688523 78688563 -80911220 + (TC)n Simple_repeat Simple_repeat 1 40 0 2 1185 369 0 0 0 chr3 78688563 78688603 -80911180 + (CA)n Simple_repeat Simple_repeat 1 41 0 2 1185 35 63 0 0 chr3 78689483 78689546 -80910237 + AT_rich Low_complexity Low_complexity 1 63 0 2 1185 237 185 0 0 chr3 78689580 78689645 -80910138 + (TA)n Simple_repeat Simple_repeat 2 66 0 2 1185 25 75 0 0 chr3 78689668 78689721 -80910062 + AT_rich Low_complexity Low_complexity 1 53 0 2 1185 7885 57 4 5 chr3 78689777 78690999 -80908784 - L1_Mus2 LINE L1 0 6566 5345 2 1185 343 269 85 11 chr3 78691161 78691255 -80908528 + PB1D10 SINE Alu 10 110 -7 2 1185 324 0 0 0 chr3 78691256 78691292 -80908491 + (TG)n Simple_repeat Simple_repeat 1 36 0 2 1185 734 286 99 29 chr3 78691523 78691898 -80907885 - L1MA4 LINE L1 -253 6047 5647 2 1185 491 300 88 1 chr3 78691899 78692071 -80907712 + ORR1D1 LTR MaLR 1 194 -190 2 1185 573 80 0 39 chr3 78692073 78692177 -80907606 + (TCTCCC)n Simple_repeat Simple_repeat 2 101 0 2 1185 385 248 45 18 chr3 78692456 78692567 -80907216 - PB1D7 SINE Alu -1 119 6 2 1185 279 358 108 20 chr3 78692720 78692971 -80906812 + MLT1F1-int LTR MaLR 968 1240 -249 2 1185 335 288 86 23 chr3 78693351 78693525 -80906258 + MLT1F1 LTR MaLR 379 563 -6 2 1185 600 14 0 0 chr3 78694870 78694939 -80904844 + (TAGA)n Simple_repeat Simple_repeat 1 69 0 2 1185 454 110 12 24 chr3 78695010 78695094 -80904689 + (TTTG)n Simple_repeat Simple_repeat 2 84 0 2 1185 231 36 0 0 chr3 78695727 78695755 -80904028 + (T)n Simple_repeat Simple_repeat 1 28 0 2 1185 189 0 0 0 chr3 78696071 78696092 -80903691 + (T)n Simple_repeat Simple_repeat 1 21 0 2 1185 344 253 53 0 chr3 78697145 78697240 -80902543 + PB1D10 SINE Alu 1 100 -17 2 1185 881 243 155 6 chr3 78698489 78698851 -80900932 + L1MA4 LINE L1 5518 5932 -368 2 1185 379 204 22 22 chr3 78699213 78699303 -80900480 - RMER20B LTR ERVK -25 602 513 2 1185 789 255 104 38 chr3 78699396 78699742 -80900041 + RMER13A LTR ERVK 98 466 -394 2 1185 861 283 13 77 chr3 78700207 78700286 -80899497 - RMER20B LTR ERVK -154 473 415 2 1185 2806 82 136 9 chr3 78700286 78700705 -80899078 + L1_Mus4 LINE L1 6165 6636 0 2 1185 861 283 13 77 chr3 78700705 78700935 -80898848 - RMER20B LTR ERVK -213 414 184 2 1185 2987 86 0 10 chr3 78701007 78701407 -80898376 - MTA_Mm LTR MaLR 0 396 1 2 1185 7611 83 3 77 chr3 78701407 78702592 -80897191 - MTA_Mm-int LTR MaLR 0 1098 1 2 1185 3905 57 11 0 chr3 78702594 78703064 -80896719 - MT2C_Mm LTR ERVL 0 475 1 2 1185 2805 71 60 5 chr3 78704604 78704988 -80894795 + L1Md_F2 LINE L1 6177 6581 -1 2 1185 294 309 0 23 chr3 78706569 78706655 -80893128 + B1F SINE Alu 10 93 -56 2 1185 518 28 28 0 chr3 78706664 78706735 -80893048 + (CAGAGA)n Simple_repeat Simple_repeat 6 78 0 2 1185 229 333 33 0 chr3 78707987 78708077 -80891706 + MIR SINE MIR 48 140 -122 2 1185 819 274 42 75 chr3 78708169 78708477 -80891306 - MTE2b LTR MaLR -65 314 17 2 1185 462 347 103 20 chr3 78709110 78709568 -80890215 - L2 LINE L2 -830 2589 2094 2 1185 212 317 80 10 chr3 78711212 78711358 -80888425 + MIRc SINE MIR 12 169 -93 2 1185 196 295 25 13 chr3 78711806 78711885 -80887898 - MIR SINE MIR 0 262 183 2 1185 423 38 0 0 chr3 78712267 78712320 -80887463 + (CA)n Simple_repeat Simple_repeat 1 53 0 3 1185 190 311 61 78 chr3 78713156 78713271 -80886512 - L2c LINE L2 0 3387 3275 3 1185 1243 41 0 0 chr3 78713715 78713862 -80885921 + B1_Mm SINE Alu 1 147 0 3 1185 470 96 0 14 chr3 78713866 78713940 -80885843 + (GGA)n Simple_repeat Simple_repeat 3 75 0 3 1185 306 0 0 0 chr3 78714386 78714420 -80885363 + (CA)n Simple_repeat Simple_repeat 1 34 0 3 1185 338 239 33 74 chr3 78715072 78715220 -80884563 + L1MA4 LINE L1 5758 5903 -397 3 1185 405 221 71 39 chr3 78715235 78715362 -80884421 + B1F SINE Alu 17 147 -2 3 1185 270 307 112 60 chr3 78715366 78715602 -80884181 + L1MA4 LINE L1 5896 6154 -146 3 1185 504 48 0 0 chr3 78715602 78715665 -80884118 + (TTTC)n Simple_repeat Simple_repeat 2 64 0 3 1185 210 37 0 0 chr3 78715665 78715691 -80884092 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 3 1185 1099 45 30 0 chr3 78715691 78715825 -80883958 - B1_Mus1 SINE Alu -9 139 2 3 1185 270 307 112 60 chr3 78715825 78715853 -80883930 + L1MA4 LINE L1 6155 6174 -126 3 1185 353 194 88 39 chr3 78715853 78715955 -80883828 + PB1D10 SINE Alu 4 110 -7 3 1185 634 262 4 141 chr3 78715967 78716022 -80883761 + B3A SINE B2 3 40 -158 3 1185 408 40 0 0 chr3 78716022 78716072 -80883711 + (CA)n Simple_repeat Simple_repeat 2 51 0 3 1185 634 262 4 141 chr3 78716072 78716243 -80883540 + B3A SINE B2 41 198 0 3 1185 1196 79 44 22 chr3 78716252 78716433 -80883350 + B2_Mm2 SINE B2 2 186 -9 3 1185 677 290 75 15 chr3 78716770 78717036 -80882747 + B4A SINE B4 1 282 -10 3 1185 220 53 53 0 chr3 78717975 78718013 -80881770 + (TA)n Simple_repeat Simple_repeat 1 40 0 3 1185 384 385 6 0 chr3 78718676 78718842 -80880941 - MLT1D LTR MaLR -51 454 288 3 1185 3109 72 2 17 chr3 78719053 78719465 -80880318 + L1_Mus2 LINE L1 6161 6566 0 3 1185 192 77 0 0 chr3 78722380 78722406 -80877377 + (A)n Simple_repeat Simple_repeat 1 26 0 3 1185 222 37 0 0 chr3 78722422 78722449 -80877334 + (TAG)n Simple_repeat Simple_repeat 2 28 0 3 1185 291 244 49 37 chr3 78724640 78724721 -80875062 + ID4_ SINE ID 2 83 0 3 1185 1333 97 17 0 chr3 78726294 78726470 -80873313 + B2_Mm2 SINE B2 1 179 -16 3 1185 230 247 38 38 chr3 78726666 78726699 -80873084 - MIR SINE MIR -93 169 139 3 1185 1946 21 8 24 chr3 78726699 78726945 -80872838 - L1Md_F3 LINE L1 0 6584 6343 3 1185 230 247 38 38 chr3 78726945 78726991 -80872792 - MIR SINE MIR -124 138 90 3 1185 915 188 3 218 chr3 78728532 78728678 -80871105 - URR1B DNA MER1_type 0 225 95 3 1185 561 88 0 0 chr3 78728678 78728758 -80871025 + (TG)n Simple_repeat Simple_repeat 1 80 0 3 1185 915 188 3 218 chr3 78728758 78728896 -80870887 - URR1B DNA MER1_type -131 94 2 3 1185 381 295 8 8 chr3 78728997 78729126 -80870657 + MLT1A0 LTR MaLR 45 173 -192 3 1185 1885 232 39 92 chr3 78729126 78729399 -80870384 + RMER19C LTR ERVK 1 303 -308 3 1185 450 0 0 0 chr3 78729399 78729449 -80870334 + (CA)n Simple_repeat Simple_repeat 1 50 0 3 1185 1885 211 40 85 chr3 78729449 78729750 -80870033 + RMER19C LTR ERVK 304 611 0 3 1185 343 236 48 108 chr3 78729752 78729918 -80869865 + MLT1A0 LTR MaLR 181 336 -38 3 1185 1358 235 68 19 chr3 78730128 78730497 -80869286 - MTD LTR MaLR -32 387 1 3 1185 242 188 0 0 chr3 78730531 78730579 -80869204 + PB1D10 SINE Alu 70 117 0 3 1185 294 327 37 43 chr3 78731211 78731374 -80868409 - MLT1F1 LTR MaLR -405 164 3 3 1185 257 216 0 0 chr3 78732946 78732997 -80866786 - MTE2a LTR MaLR -39 340 290 3 1185 456 292 69 56 chr3 78733368 78733600 -80866183 - RMER2 LTR ERV1 -4 563 329 3 1185 503 264 0 26 chr3 78734061 78734174 -80865609 + PB1D10 SINE Alu 2 111 -6 3 1185 397 309 62 55 chr3 78734278 78734586 -80865197 + L1MEf LINE L1 1365 1674 -4526 3 1185 341 217 138 24 chr3 78735041 78735164 -80864619 - Tigger5 DNA MER2_type -65 2341 2205 3 1185 445 302 176 22 chr3 78735350 78735577 -80864206 + RMER15 LTR ERVL 314 575 0 3 1185 411 290 8 16 chr3 78735611 78735737 -80864046 - Tigger5 DNA MER2_type -2150 256 132 3 1185 281 315 128 9 chr3 78735871 78735980 -80863803 - Tigger5 DNA MER2_type -2284 122 1 3 1185 1254 205 169 139 chr3 78736509 78737025 -80862758 + MT2A LTR ERVL 3 533 0 3 1185 1812 149 56 12 chr3 78738629 78738968 -80860815 - ORR1B1 LTR MaLR 0 394 41 3 1185 415 287 127 0 chr3 78739797 78739954 -80859829 + MER5A DNA MER1_type 12 188 -1 3 1185 589 269 39 29 chr3 78739985 78740192 -80859591 - B3 SINE B2 -6 210 2 3 1185 437 361 28 0 chr3 78740275 78740419 -80859364 + RSINE1 SINE B4 12 159 -6 3 1185 183 114 0 0 chr3 78740422 78740457 -80859326 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 3 1185 315 297 195 0 chr3 78740468 78740586 -80859197 + B1F2 SINE Alu 1 141 -8 3 1185 482 235 76 62 chr3 78740787 78740932 -80858851 + RSINE1 SINE B4 4 150 -15 3 1185 333 0 0 0 chr3 78742321 78742358 -80857425 + (TG)n Simple_repeat Simple_repeat 2 38 0 3 1185 503 222 48 57 chr3 78742364 78742488 -80857295 - RSINE1 SINE B4 -39 126 4 3 1185 2560 192 173 8 chr3 78742488 78743119 -80856664 + RMER19A LTR ERVK 1 735 -2 3 1185 206 319 91 16 chr3 78743234 78743355 -80856428 - MIRb SINE MIR 0 268 139 3 1185 336 48 0 0 chr3 78743567 78743609 -80856174 + (TG)n Simple_repeat Simple_repeat 2 43 0 3 1185 257 267 47 0 chr3 78744685 78744771 -80855012 + PB1D10 SINE Alu 1 90 -27 3 1185 601 55 0 108 chr3 78745068 78745129 -80854654 - B1_Mus2 SINE Alu 0 147 97 3 1185 7704 29 0 0 chr3 78745129 78746015 -80853768 + L1Md_T LINE L1 5697 6582 0 3 1185 601 55 0 108 chr3 78746015 78746055 -80853728 - B1_Mus2 SINE Alu -51 96 57 3 1185 207 0 0 0 chr3 78746068 78746091 -80853692 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 3 1185 233 254 14 29 chr3 78746195 78746264 -80853519 + GA-rich Low_complexity Low_complexity 3 70 0 3 1185 312 361 63 15 chr3 78746592 78746797 -80852986 + MER2 DNA MER2_type 12 226 -119 3 1185 255 179 0 0 chr3 78747223 78747290 -80852493 + T-rich Low_complexity Low_complexity 1 67 0 3 1185 1206 54 0 0 chr3 78747291 78747438 -80852345 - B1_Mus1 SINE Alu -1 147 1 3 1185 252 77 0 0 chr3 78747439 78747478 -80852305 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 3 1185 393 141 0 0 chr3 78748635 78748706 -80851077 + (T)n Simple_repeat Simple_repeat 1 71 0 3 1185 520 252 7 45 chr3 78748731 78748885 -80850898 + RSINE1 SINE B4 12 159 -6 3 1185 518 43 14 0 chr3 78748928 78748997 -80850786 + (CATA)n Simple_repeat Simple_repeat 2 71 0 3 1185 702 216 58 54 chr3 78749003 78749208 -80850575 + B3 SINE B2 1 206 -10 3 1185 34 0 0 0 chr3 78749221 78749255 -80850528 + AT_rich Low_complexity Low_complexity 1 34 0 3 1185 1370 146 0 9 chr3 78749390 78749618 -80850165 - MTC LTR MaLR -3 418 193 3 1185 204 61 59 39 chr3 78749618 78749669 -80850114 + T-rich Low_complexity Low_complexity 3 54 0 3 1185 788 152 6 88 chr3 78749670 78749829 -80849954 - B1_Mus1 SINE Alu -2 146 1 3 1185 244 210 16 0 chr3 78749829 78749891 -80849892 - MTC LTR MaLR -211 210 148 3 1185 619 178 87 20 chr3 78750682 78750831 -80848952 - MTC LTR MaLR -262 159 1 3 1185 367 243 69 44 chr3 78751370 78751529 -80848254 + RSINE1 SINE B4 3 165 0 3 1185 23 0 0 0 chr3 78751951 78751974 -80847809 + AT_rich Low_complexity Low_complexity 1 23 0 3 1185 22 35 0 0 chr3 78752459 78752488 -80847295 + AT_rich Low_complexity Low_complexity 1 29 0 3 1185 297 356 0 17 chr3 78752565 78752682 -80847101 + PB1D10 SINE Alu 3 117 0 3 1185 988 249 139 27 chr3 78752691 78752713 -80847070 + ORR1D2 LTR MaLR 3 25 -345 3 1185 207 0 0 0 chr3 78752713 78752736 -80847047 + (CCCCCA)n Simple_repeat Simple_repeat 2 24 0 3 1185 988 249 139 27 chr3 78752736 78753044 -80846739 + ORR1D2 LTR MaLR 26 370 0 3 1185 263 277 60 162 chr3 78753044 78753346 -80846437 + B4 SINE B4 4 274 -18 3 1185 480 86 0 0 chr3 78753351 78753421 -80846362 + (CA)n Simple_repeat Simple_repeat 1 70 0 3 1185 261 0 0 0 chr3 78753583 78753612 -80846171 + (GAAA)n Simple_repeat Simple_repeat 3 31 0 3 1185 796 181 13 13 chr3 78753612 78753828 -80845955 + GA-rich Low_complexity Low_complexity 1 215 0 3 1185 1554 216 35 73 chr3 78754043 78754442 -80845341 + ORR1C2 LTR MaLR 1 384 0 3 1185 415 235 67 0 chr3 78754892 78755013 -80844770 - MTC LTR MaLR 0 421 286 3 1185 28 0 0 0 chr3 78755274 78755302 -80844481 + AT_rich Low_complexity Low_complexity 1 28 0 3 1185 295 307 19 51 chr3 78755612 78755770 -80844013 - L1M5 LINE L1 -2157 3989 3837 3 1185 1899 139 30 69 chr3 78755774 78756167 -80843616 + ORR1C1 LTR MaLR 1 378 0 3 1185 4315 230 105 42 chr3 78756167 78757456 -80842327 + ORR1C1-int LTR MaLR 1 1370 0 3 1185 1569 142 183 68 chr3 78757456 78757795 -80841988 + ORR1C1 LTR MaLR 1 378 0 3 1185 463 293 74 20 chr3 78757816 78758060 -80841723 - L1M3 LINE L1 -606 5574 5318 3 1185 650 236 163 82 chr3 78758100 78758166 -80841617 - L1MA7 LINE L1 -47 6244 6160 3 1185 477 0 0 0 chr3 78758166 78758219 -80841564 + (TG)n Simple_repeat Simple_repeat 2 54 0 3 1185 522 46 0 0 chr3 78758219 78758284 -80841499 + (GA)n Simple_repeat Simple_repeat 2 66 0 3 1185 650 236 163 82 chr3 78758284 78758323 -80841460 - L1MA7 LINE L1 -132 6159 6102 3 1185 467 267 8 17 chr3 78758323 78758441 -80841342 + PB1D10 SINE Alu 1 117 0 3 1185 650 236 163 82 chr3 78758441 78758582 -80841201 - L1MA7 LINE L1 -190 6101 5976 3 1185 1794 197 20 80 chr3 78758582 78758984 -80840799 + ORR1C1 LTR MaLR 1 378 0 3 1185 650 236 163 82 chr3 78758984 78759163 -80840620 - L1MA7 LINE L1 -316 5975 5783 3 1185 958 260 98 33 chr3 78759578 78759759 -80840024 - L1MA7 LINE L1 -614 5677 5501 3 1185 248 70 23 0 chr3 78759759 78759802 -80839981 + (CAAA)n Simple_repeat Simple_repeat 3 46 0 3 1185 958 267 101 28 chr3 78759802 78760116 -80839667 - L1MA7 LINE L1 -791 5500 5141 3 1185 1212 177 129 31 chr3 78760163 78760486 -80839297 - MTD LTR MaLR 0 419 32 3 1185 1197 274 179 31 chr3 78760495 78761285 -80838498 - L1MA7 LINE L1 -1142 4998 4063 3 1185 255 344 44 31 chr3 78761307 78761535 -80838248 - L1M3 LINE L1 -849 5291 5061 3 1185 359 281 102 25 chr3 78761574 78761731 -80838052 - L1M3 LINE L1 -1066 5074 4906 3 1185 2068 114 3 0 chr3 78761732 78762049 -80837734 + ORR1A3 LTR MaLR 1 318 -8 3 1185 220 315 91 15 chr3 78762240 78762372 -80837411 + MIRb SINE MIR 91 232 -36 3 1185 212 0 36 0 chr3 78762664 78762692 -80837091 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 3 1185 266 250 0 0 chr3 78763510 78763570 -80836213 + RMER15 LTR ERVL 1 60 -515 3 1185 1644 233 186 7 chr3 78763589 78764047 -80835736 + RMER15 LTR ERVL 22 561 -14 3 1185 235 242 48 0 chr3 78764161 78764223 -80835560 - 4.5SRNA scRNA scRNA -29 65 1 3 1185 2037 177 112 30 chr3 78764245 78764746 -80835037 + Lx9 LINE L1 7102 7643 -1 3 1185 288 250 19 65 chr3 78765682 78765789 -80833994 + PB1D10 SINE Alu 1 102 -15 3 1185 270 0 0 0 chr3 78766223 78766253 -80833530 + (GA)n Simple_repeat Simple_repeat 2 31 0 3 1185 295 261 16 65 chr3 78766414 78766537 -80833246 + MLT1E2 LTR MaLR 347 463 -164 4 1185 245 219 94 0 chr3 78766689 78766753 -80833030 + PB1D10 SINE Alu 46 115 -2 4 1185 24 0 0 0 chr3 78766974 78766998 -80832785 + AT_rich Low_complexity Low_complexity 1 24 0 4 1185 1417 215 165 79 chr3 78767161 78767652 -80832131 + MT2A LTR ERVL 1 533 0 4 1185 1023 225 154 17 chr3 78767761 78768118 -80831665 + MTD LTR MaLR 1 406 -13 4 1185 234 0 0 0 chr3 78768411 78768437 -80831346 + (A)n Simple_repeat Simple_repeat 1 26 0 4 1185 249 33 0 0 chr3 78769122 78769152 -80830631 + (CACCG)n Simple_repeat Simple_repeat 3 32 0 4 1185 364 298 10 0 chr3 78769166 78769270 -80830513 - PB1D10 SINE Alu -8 109 5 4 1185 285 29 0 0 chr3 78769375 78769409 -80830374 + (T)n Simple_repeat Simple_repeat 1 34 0 4 1185 214 182 45 0 chr3 78770747 78770791 -80828992 + G-rich Low_complexity Low_complexity 3 48 0 4 1185 213 189 0 0 chr3 78770941 78770978 -80828805 + (CCG)n Simple_repeat Simple_repeat 2 38 0 4 1185 29 28 0 0 chr3 78771102 78771138 -80828645 + GC_rich Low_complexity Low_complexity 1 36 0 4 148 32688 84 24 13 chr3 78771745 78777065 -80822718 + L1Md_F2 LINE L1 217 5586 -297 4 1186 7678 71 3 9 chr3 78777066 78778063 -80821720 + L1Md_F2 LINE L1 5588 6578 -4 4 1186 2982 62 47 0 chr3 78778102 78778486 -80821297 - L1_Mus1 LINE L1 -1 6566 6165 4 1186 339 299 28 82 chr3 78778487 78778578 -80821205 - Lx7 LINE L1 -1921 5775 5689 4 1186 1900 124 3 3 chr3 78778578 78778862 -80820921 + Lx2 LINE L1 6714 6997 0 4 1186 339 299 28 82 chr3 78778862 78778952 -80820831 - Lx7 LINE L1 -2008 5688 5604 4 1186 2041 132 113 3 chr3 78779063 78779435 -80820348 + MTC LTR MaLR 1 413 -8 4 1186 416 367 0 31 chr3 78779892 78780055 -80819728 + RSINE1 SINE B4 8 165 0 4 1186 339 350 10 0 chr3 78780189 78780292 -80819491 - RSINE1 SINE B4 -61 104 1 4 1186 3057 26 0 0 chr3 78780411 78780761 -80819022 + L1Md_T LINE L1 6230 6579 -3 4 1186 1376 221 36 7 chr3 78780919 78781228 -80818555 - Lx7 LINE L1 -601 5279 4962 4 1186 627 139 74 0 chr3 78781227 78781349 -80818434 + Lx7 LINE L1 5285 5415 -465 4 1186 1055 93 60 11 chr3 78781349 78781533 -80818250 - B2_Mm2 SINE B2 -1 194 2 4 1186 2047 204 29 34 chr3 78781535 78781981 -80817802 + Lx7 LINE L1 5424 5867 -13 4 1186 1367 262 3 15 chr3 78781983 78782313 -80817470 + Lx7 LINE L1 6254 6579 -1117 4 1186 1817 60 0 0 chr3 78783260 78783477 -80816306 + L1Md_F3 LINE L1 6043 6259 -325 4 1186 384 83 0 0 chr3 78783477 78783525 -80816258 + RLTR42-int LTR ERVK 1748 1795 -3727 4 1186 352 164 0 151 chr3 78783570 78783656 -80816127 + RLTR42-int LTR ERVK 1797 1869 -3653 4 1186 1642 253 79 37 chr3 78784391 78785155 -80814628 + RMER1A Other Other 15 554 -512 4 1186 2304 203 67 180 chr3 78785167 78786200 -80813583 + RMER1B Other Other 1 1062 -4 4 1186 5133 167 40 80 chr3 78786448 78787542 -80812241 + RLTR42-int LTR ERVK 1861 2911 -2611 4 1186 522 199 21 161 chr3 78787559 78787751 -80812032 + RLTR42-int LTR ERVK 3108 3272 -2250 4 1186 391 266 76 140 chr3 78787799 78787952 -80811831 - RLTR12B LTR ERVK -76 492 347 4 1186 2217 123 49 77 chr3 78787952 78788357 -80811426 + ORR1B1 LTR MaLR 1 394 0 4 1186 688 240 46 87 chr3 78788357 78788718 -80811065 - RLTR12B LTR ERVK -222 346 11 4 1186 7987 138 64 26 chr3 78788726 78790236 -80809547 + RLTR42-int LTR ERVK 3270 4836 -686 4 1186 2003 195 93 24 chr3 78790255 78790750 -80809033 + RLTR42-int LTR ERVK 4939 5467 -55 4 1186 943 179 35 123 chr3 78790769 78790910 -80808873 + RLTR42 LTR ERVK 2 141 -98 4 1186 1184 68 0 0 chr3 78790910 78791057 -80808726 + B1_Mus1 SINE Alu 2 148 0 4 1186 943 179 35 123 chr3 78791057 78791176 -80808607 + RLTR42 LTR ERVK 142 239 0 4 1186 291 243 44 26 chr3 78792616 78792730 -80807053 - MTEb LTR MaLR 0 379 264 4 1186 250 326 30 59 chr3 78792903 78793004 -80806779 - MTEb LTR MaLR -281 98 1 4 1186 231 36 0 0 chr3 78793288 78793316 -80806467 + (CA)n Simple_repeat Simple_repeat 2 29 0 4 1186 1497 141 35 12 chr3 78793784 78794042 -80805741 + RLTR14 LTR ERV1 112 375 -7 4 1186 2806 53 18 0 chr3 78794053 78794393 -80805390 + ORR1A1 LTR MaLR 1 346 0 4 1186 1347 309 108 35 chr3 78794393 78795064 -80804719 - L1M2 LINE L1 -665 5626 4860 4 1186 464 304 37 25 chr3 78795064 78795226 -80804557 + RSINE1 SINE B4 1 164 -1 4 1186 1065 101 0 0 chr3 78795227 78795406 -80804377 + (CA)n Simple_repeat Simple_repeat 1 179 0 4 1186 1347 307 114 38 chr3 78795406 78795844 -80803939 - L1M2 LINE L1 -1253 4890 4433 4 1186 1313 66 0 21 chr3 78797196 78797382 -80802401 + IAPEY_LTR LTR ERVK 204 385 0 4 1186 350 212 12 24 chr3 78797382 78797453 -80802330 + PB1D9 SINE Alu 51 120 0 4 1186 976 324 73 15 chr3 78797649 78798116 -80801667 + RMER5 LTR ERV1 33 526 -8 4 1186 309 145 0 0 chr3 78799165 78799227 -80800556 + (TG)n Simple_repeat Simple_repeat 2 63 0 4 1186 619 231 17 75 chr3 78799960 78800133 -80799650 - B4A SINE B4 -6 286 124 4 1186 625 178 5 54 chr3 78800136 78800320 -80799463 + C-rich Low_complexity Low_complexity 4 178 0 4 1186 414 211 87 0 chr3 78800434 78800538 -80799245 + MTEb LTR MaLR 267 379 0 4 1186 920 257 121 36 chr3 78800547 78800603 -80799180 + MTEa LTR MaLR 20 85 -294 4 1186 1802 185 111 3 chr3 78800603 78800944 -80798839 - ORR1C1 LTR MaLR 0 378 1 4 1186 920 257 121 36 chr3 78800944 78801218 -80798565 + MTEa LTR MaLR 86 378 -1 4 1186 456 342 109 18 chr3 78801781 78802055 -80797728 - MLT1J-int LTR MaLR -221 1166 868 4 1186 279 175 0 0 chr3 78802226 78802283 -80797500 + GA-rich Low_complexity Low_complexity 3 59 0 4 1186 1259 47 0 0 chr3 78802623 78802771 -80797012 + B1_Mus1 SINE Alu 1 148 0 4 1186 262 303 0 29 chr3 78803427 78803495 -80796288 + RSINE1 SINE B4 100 165 0 4 1186 250 246 54 85 chr3 78803671 78803800 -80795983 + RLTR12B LTR ERVK 397 521 -7 4 1186 769 209 108 120 chr3 78803807 78804123 -80795660 - MTE2b LTR MaLR -65 314 3 4 1186 340 298 77 0 chr3 78804123 78804227 -80795556 - MLT1J-int LTR MaLR -833 554 443 4 1186 252 359 89 47 chr3 78804241 78804431 -80795352 - MLT1J-int LTR MaLR -985 402 205 4 1186 656 187 31 43 chr3 78804769 78804931 -80794852 + MER34A1 LTR ERV1 4 163 -424 4 1186 786 194 248 11 chr3 78804943 78805272 -80794511 - MTD LTR MaLR -17 402 1 4 1186 527 271 129 110 chr3 78805272 78805683 -80794100 + MER34A1 LTR ERV1 160 578 -9 4 1186 495 48 0 0 chr3 78807121 78807183 -80792600 + (TAGA)n Simple_repeat Simple_repeat 4 65 0 4 1186 463 298 43 73 chr3 78807404 78807636 -80792147 - ORR1E LTR MaLR -126 233 9 4 1186 5319 226 31 55 chr3 78808501 78809532 -80790251 - Lx6 LINE L1 -710 6750 5713 4 1186 1671 163 11 71 chr3 78809532 78809882 -80789901 - ORR1A4 LTR MaLR 0 329 1 4 1186 5319 192 26 171 chr3 78809882 78810808 -80788975 - Lx6 LINE L1 -168 5712 4768 4 1186 1080 126 66 0 chr3 78810808 78810975 -80788808 + B2_Mm1t SINE B2 2 179 -14 4 1186 292 131 288 35 chr3 78810977 78811108 -80788675 + B2_Mm2 SINE B2 15 180 -15 4 1186 5319 192 26 171 chr3 78811108 78811604 -80788179 - Lx6 LINE L1 -1113 4765 4386 4 1186 3171 189 125 6 chr3 78811569 78811675 -80788108 - RMER1A Other Other -4 1026 893 4 1186 432 0 0 0 chr3 78811675 78811723 -80788060 + (CA)n Simple_repeat Simple_repeat 2 49 0 4 1186 3171 189 125 6 chr3 78811723 78812298 -80787485 - RMER1A Other Other -138 892 264 4 1186 6238 178 24 16 chr3 78812321 78812760 -80787023 - Lx6 LINE L1 -3393 2487 2058 4 1186 441 36 0 0 chr3 78812760 78812815 -80786968 + (TG)n Simple_repeat Simple_repeat 1 55 0 4 1186 6238 190 26 16 chr3 78812815 78813839 -80785944 - Lx6 LINE L1 -3823 2057 1007 4 1186 626 157 17 0 chr3 78813839 78813954 -80785829 + RLTR11A2 LTR ERVK 1 117 -410 4 1186 982 150 0 27 chr3 78813956 78814141 -80785642 + RLTR11A2 LTR ERVK 348 527 0 4 1186 770 236 33 0 chr3 78814141 78814353 -80785430 - Lx6 LINE L1 -6650 1078 860 4 1186 253 304 202 0 chr3 78814387 78814545 -80785238 - Lx6 LINE L1 -7508 220 91 4 1186 1384 39 55 6 chr3 78814590 78814772 -80785011 - B2_Mm2 SINE B2 -3 192 2 4 1186 264 171 0 0 chr3 78814906 78814947 -80784836 + B3A SINE B2 1 41 -157 4 1186 17470 45 4 1 chr3 78814947 78817065 -80782718 + L1Md_F2 LINE L1 3461 5584 -299 4 1186 8373 37 2 7 chr3 78817067 78818068 -80781715 + L1Md_F2 LINE L1 5587 6582 0 4 1186 6791 55 1 5 chr3 78818069 78818916 -80780867 + L1Md_F2 LINE L1 5739 6582 0 4 1186 671 227 22 28 chr3 78818916 78819097 -80780686 + B3 SINE B2 32 211 -5 4 1186 351 300 22 37 chr3 78819409 78819544 -80780239 - B1F SINE Alu -7 142 10 4 1186 567 0 0 0 chr3 78820575 78820638 -80779145 + (TG)n Simple_repeat Simple_repeat 1 63 0 4 1186 486 278 153 16 chr3 78821186 78821435 -80778348 + RMER15 LTR ERVL 277 559 -16 4 1186 1153 328 93 59 chr3 78821446 78822153 -80777630 + RMER15-int LTR ERVL 1 731 -4268 4 1186 708 278 52 104 chr3 78822153 78822240 -80777543 + MTE2b LTR MaLR 1 77 -302 4 1186 369 62 0 0 chr3 78822240 78822288 -80777495 + (TTG)n Simple_repeat Simple_repeat 1 48 0 4 1186 708 278 52 104 chr3 78822288 78822489 -80777294 + MTE2b LTR MaLR 78 274 -105 4 1186 321 333 0 0 chr3 78822624 78822786 -80776997 + CT-rich Low_complexity Low_complexity 4 165 0 4 1186 287 316 35 41 chr3 78822959 78823104 -80776679 + MTE2b LTR MaLR 236 379 0 4 1186 1907 261 103 20 chr3 78823196 78823829 -80775954 + RMER15-int LTR ERVL 4148 4832 -167 4 1186 363 292 38 8 chr3 78824020 78824151 -80775632 + RMER15 LTR ERVL 426 560 -15 4 1186 224 196 35 35 chr3 78824605 78824663 -80775120 - PB1D9 SINE Alu -1 148 68 4 1186 183 356 58 45 chr3 78825075 78825231 -80774552 - L2a LINE L2 -250 3176 3019 4 1186 297 0 0 0 chr3 78825259 78825292 -80774491 + (TAA)n Simple_repeat Simple_repeat 1 33 0 4 1186 1265 218 25 76 chr3 78825293 78825720 -80774063 - RMER16 LTR ERVK 0 533 3 4 1186 231 146 0 0 chr3 78825721 78825762 -80774021 + (TAA)n Simple_repeat Simple_repeat 1 41 0 4 1186 229 213 51 39 chr3 78825844 78825922 -80773861 - RLTR11A2 LTR ERVK -48 479 401 4 1186 210 127 0 83 chr3 78826167 78826227 -80773556 + T-rich Low_complexity Low_complexity 3 57 0 4 1186 212 149 0 21 chr3 78828433 78828481 -80771302 + (TG)n Simple_repeat Simple_repeat 2 48 0 4 1186 416 310 100 73 chr3 78828527 78828788 -80770995 - B4 SINE B4 -16 276 9 4 1186 404 291 9 0 chr3 78828868 78828978 -80770805 + PB1D9 SINE Alu 10 120 0 4 1186 364 280 28 9 chr3 78828990 78829098 -80770685 + ORR1E LTR MaLR 31 140 -219 4 1186 447 263 68 0 chr3 78829149 78829267 -80770516 - B3 SINE B2 -90 126 1 4 1186 315 209 105 0 chr3 78830495 78830581 -80769202 - MLT1D LTR MaLR 0 505 411 4 1186 962 236 19 14 chr3 78830609 78830824 -80768959 - B3 SINE B2 0 216 1 4 1186 386 340 54 36 chr3 78830908 78831131 -80768652 - MLT1D LTR MaLR -258 247 21 4 1186 253 302 113 69 chr3 78831403 78831606 -80768177 - MLT1K LTR MaLR 0 595 384 4 1186 783 251 101 37 chr3 78832544 78832892 -80766891 + RMER13A LTR ERVK 95 464 -396 4 1186 247 246 66 40 chr3 78833844 78833920 -80765863 + ID4 SINE ID 1 78 -5 4 1186 243 88 0 0 chr3 78833920 78833954 -80765829 + (TTAA)n Simple_repeat Simple_repeat 3 36 0 4 1186 540 0 0 0 chr3 78834433 78834493 -80765290 + (TG)n Simple_repeat Simple_repeat 2 61 0 4 1186 386 305 70 84 chr3 78834501 78834644 -80765139 - RSINE1 SINE B4 -23 142 2 4 1186 283 379 27 7 chr3 78834781 78834927 -80764856 + ORR1E LTR MaLR 1 149 -210 4 1186 469 243 115 24 chr3 78835109 78835420 -80764363 - L1MDa LINE L1 -3364 3173 2863 4 1186 230 290 153 42 chr3 78835463 78835607 -80764176 - RMER30 DNA MER1_type -41 161 2 4 1186 3634 66 92 50 chr3 78835613 78836154 -80763629 - LTRIS2 LTR ERV1 0 564 1 4 1186 2298 86 15 79 chr3 78836444 78836848 -80762935 + RLTR1B LTR ERV1 135 512 0 4 1186 473 254 123 0 chr3 78836860 78836990 -80762793 - B1_Mur2 SINE Alu -1 148 3 4 1186 793 190 167 11 chr3 78837101 78837167 -80762616 - B3 SINE B2 0 216 122 4 1186 1976 125 82 0 chr3 78837167 78837471 -80762312 - ORR1A4 LTR MaLR 0 329 1 4 1186 793 190 167 11 chr3 78837471 78837590 -80762193 - B3 SINE B2 -95 121 3 4 1186 829 263 223 27 chr3 78837733 78838316 -80761467 - L1MDa LINE L1 -4863 1770 1074 4 1186 708 259 34 28 chr3 78838342 78838521 -80761262 + B3A SINE B2 9 188 -10 5 1186 213 272 49 12 chr3 78838703 78838785 -80760998 + B1F SINE Alu 41 125 -24 5 1186 2074 211 88 2 chr3 78839020 78839486 -80760297 + RLTR18B LTR ERVK 1 506 -6 5 1186 252 0 0 0 chr3 78839632 78839660 -80760123 + (GTTTG)n Simple_repeat Simple_repeat 5 32 0 5 1186 1043 75 0 76 chr3 78840134 78840292 -80759491 + B1_Mus2 SINE Alu 1 146 -1 5 1186 1461 45 17 0 chr3 78840305 78840481 -80759302 - B2_Mm2 SINE B2 -14 181 3 5 1186 216 245 0 0 chr3 78841668 78841717 -80758066 + ID2 SINE ID 10 58 -25 5 1186 478 238 30 36 chr3 78841731 78841897 -80757886 + L1MA6 LINE L1 6109 6273 -27 5 1186 238 213 0 0 chr3 78841944 78841991 -80757792 + MT2B LTR ERVL 82 128 -405 5 1186 516 212 7 77 chr3 78842017 78842028 -80757755 + MT2B LTR ERVL 84 93 -440 5 1186 841 162 0 63 chr3 78842028 78842186 -80757597 - B1_Mus1 SINE Alu 0 148 1 5 1186 905 263 26 44 chr3 78842186 78842532 -80757251 + MT2B LTR ERVL 94 600 -1 5 1186 351 0 0 0 chr3 78842633 78842672 -80757111 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 5 1186 318 170 135 96 chr3 78842835 78842939 -80756844 + B1_Mur3 SINE Alu 42 149 0 5 1186 296 279 112 65 chr3 78843014 78843183 -80756600 + B4A SINE B4 16 192 -100 5 1186 366 129 0 0 chr3 78843209 78843271 -80756512 + (CA)n Simple_repeat Simple_repeat 1 62 0 5 1186 255 238 0 0 chr3 78843399 78843462 -80756321 + (TAA)n Simple_repeat Simple_repeat 1 63 0 5 1186 2617 134 66 13 chr3 78844150 78844620 -80755163 - RLTR19B LTR ERVK -6 709 215 5 1186 263 246 14 0 chr3 78844622 78844691 -80755092 - RLTR23 LTR ERV1 0 430 361 5 1186 368 194 70 20 chr3 78844691 78844791 -80754992 - RLTR23 LTR ERV1 -2 428 324 5 1186 4975 44 2 2 chr3 78844957 78845544 -80754239 - LTRIS_Mus LTR ERV1 0 587 1 5 1186 1528 158 53 32 chr3 78845798 78846139 -80753644 - RMER6C LTR ERVK -3 687 340 5 1186 375 277 17 35 chr3 78846164 78846280 -80753503 - B1_Mm SINE Alu -31 116 3 5 1186 557 168 8 123 chr3 78846280 78846375 -80753408 - MT2B LTR ERVL -414 187 154 5 1186 304 51 0 0 chr3 78846385 78846424 -80753359 - RMER6D LTR ERVK -681 39 1 5 1186 252 214 138 16 chr3 78846847 78846953 -80752830 - MTE2a LTR MaLR -1 418 281 5 1186 290 294 0 0 chr3 78847042 78847110 -80752673 + PB1D10 SINE Alu 3 70 -47 5 1186 529 222 32 22 chr3 78847105 78847281 -80752502 + B3 SINE B2 16 195 0 5 1186 268 262 25 12 chr3 78847281 78847362 -80752421 + B1_Mur4 SINE Alu 68 149 -1 5 1186 2451 150 28 34 chr3 78847556 78848054 -80751729 + RLTR31_Mm LTR ERVK 3 497 -64 5 1186 2435 112 141 25 chr3 78848702 78849134 -80750649 + RLTR45 LTR ERVK 1 482 0 5 1186 298 45 0 43 chr3 78850104 78850150 -80749633 + RLTR19-int LTR ERVK 1114 1157 -4365 5 1186 4379 22 0 12 chr3 78850150 78850649 -80749134 - MT2_Mm LTR ERVL 0 493 1 5 1186 321 0 0 0 chr3 78850649 78850687 -80749096 - MERVL-int LTR ERVL 0 5485 5448 5 1186 354 167 46 35 chr3 78850687 78850774 -80749009 - ORR1A3-int LTR MaLR -1323 640 553 5 1186 49156 13 0 0 chr3 78850774 78856134 -80743649 - MERVL-int LTR ERVL -125 5360 1 5 1186 4404 20 0 12 chr3 78856134 78856633 -80743150 - MT2_Mm LTR ERVL 0 493 1 5 1186 881 44 0 9 chr3 78856653 78856768 -80743015 + (TTC)n Simple_repeat Simple_repeat 3 116 0 5 1186 483 209 0 0 chr3 78856776 78856886 -80742897 + (TA)n Simple_repeat Simple_repeat 2 111 0 5 1186 1007 231 66 187 chr3 78856886 78857269 -80742514 + RLTR19-int LTR ERVK 1199 1534 -3988 5 1186 210 37 0 0 chr3 78857269 78857296 -80742487 + (TATG)n Simple_repeat Simple_repeat 3 29 0 5 1186 1007 231 66 187 chr3 78857296 78857670 -80742113 + RLTR19-int LTR ERVK 1535 1864 -3658 5 1186 775 217 49 116 chr3 78858019 78858200 -80741583 + RLTR19-int LTR ERVK 1869 2035 -3487 5 1186 1061 135 32 38 chr3 78858200 78858385 -80741398 - B2_Mm2 SINE B2 -10 185 2 5 1186 1291 237 45 113 chr3 78858385 78858770 -80741013 + RLTR19-int LTR ERVK 2036 2648 -3489 5 1186 2434 136 10 149 chr3 78858770 78859288 -80740495 - RLTR41 LTR ERV1 0 446 1 5 1186 1291 273 39 108 chr3 78859288 78859771 -80740012 + RLTR19-int LTR ERVK 2649 3079 -3058 5 1186 331 261 78 44 chr3 78859952 78860250 -80739533 + RLTR19-int LTR ERVK 3186 3631 -2506 5 1186 222 37 0 0 chr3 78860475 78860502 -80739281 + (T)n Simple_repeat Simple_repeat 1 27 0 5 1186 3635 164 6 6 chr3 78861163 78861784 -80737999 + L1_Mur3 LINE L1 4983 5603 -277 5 1186 951 245 27 34 chr3 78861802 78862098 -80737685 + Lx6 LINE L1 7082 7375 -85 5 1186 1288 109 86 0 chr3 78862200 78862421 -80737362 - ORR1A2 LTR MaLR -8 319 80 5 1186 3261 111 27 19 chr3 78862443 78862958 -80736825 + Lx LINE L1 6136 6654 0 5 1186 29 28 0 0 chr3 78862958 78862994 -80736789 + AT_rich Low_complexity Low_complexity 1 36 0 5 1186 444 198 11 0 chr3 78863022 78863113 -80736670 - ORR1A2 LTR MaLR -235 92 1 5 1186 1219 61 0 0 chr3 78863172 78863319 -80736464 + B1_Mus2 SINE Alu 1 147 0 5 1186 191 36 36 0 chr3 78864064 78864092 -80735691 + (TG)n Simple_repeat Simple_repeat 1 29 0 5 1186 222 167 0 0 chr3 78867460 78867520 -80732263 + A-rich Low_complexity Low_complexity 5 64 0 5 1186 582 236 94 0 chr3 78868641 78868768 -80731015 - B1_Mur3 SINE Alu -10 139 1 5 1186 1037 188 166 39 chr3 78868925 78869257 -80730526 + MTD LTR MaLR 46 419 0 5 1186 516 315 22 6 chr3 78869364 78869543 -80730240 - B3A SINE B2 -15 183 2 5 1186 552 30 0 0 chr3 78869581 78869647 -80730136 + (CA)n Simple_repeat Simple_repeat 2 67 0 5 1186 468 273 28 14 chr3 78869653 78869794 -80729989 - B3A SINE B2 -54 144 2 5 1186 253 57 0 0 chr3 78870006 78870041 -80729742 + L1_Mm LINE L1 1249 1283 -4600 5 1186 456 35 0 0 chr3 78871023 78871081 -80728702 + (TTTA)n Simple_repeat Simple_repeat 3 60 0 5 1186 1175 57 6 0 chr3 78871081 78871239 -80728544 - B2_Mm1a SINE B2 -33 160 2 5 1186 927 171 192 6 chr3 78872020 78872202 -80727581 + B3 SINE B2 1 216 0 5 1186 405 234 43 0 chr3 78873432 78873526 -80726257 - PB1D10 SINE Alu -14 103 6 5 1186 823 139 73 0 chr3 78874623 78874760 -80725023 - B1_Mus2 SINE Alu 0 147 1 5 1186 314 17 86 0 chr3 78875862 78875920 -80723863 + (GGGA)n Simple_repeat Simple_repeat 1 63 0 5 1186 285 29 0 0 chr3 78876237 78876271 -80723512 + (TGAA)n Simple_repeat Simple_repeat 3 36 0 5 1186 435 275 8 32 chr3 78876289 78876413 -80723370 + B1F2 SINE Alu 2 122 -27 5 1186 27 29 0 0 chr3 78876415 78876449 -80723334 + AT_rich Low_complexity Low_complexity 1 34 0 5 1186 1078 299 149 41 chr3 78876809 78877884 -80721899 + L1_Rod LINE L1 4671 5838 -9 5 1186 251 328 67 8 chr3 78879227 78879347 -80720436 + Kanga2_a DNA Tc2 130 256 -632 5 1186 979 232 14 9 chr3 78879384 78879606 -80720177 - ID_B1 SINE B4 0 224 2 5 1186 211 139 0 27 chr3 78879849 78879875 -80719908 + polypurine Low_complexity Low_complexity 3 28 0 5 1186 1109 123 6 0 chr3 78879875 78880054 -80719729 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 5 1186 389 70 18 0 chr3 78880064 78880121 -80719662 + (GGGA)n Simple_repeat Simple_repeat 3 60 0 5 1186 551 281 73 7 chr3 78880186 78880322 -80719461 - RSINE1 SINE B4 -10 155 11 5 1186 489 17 0 0 chr3 78880332 78880390 -80719393 + (TG)n Simple_repeat Simple_repeat 1 58 0 5 1186 180 0 0 0 chr3 78880390 78880410 -80719373 + (TGG)n Simple_repeat Simple_repeat 3 22 0 5 1186 676 227 15 0 chr3 78880412 78880544 -80719239 - RSINE1 SINE B4 -28 137 4 5 1186 331 229 195 0 chr3 78880709 78880827 -80718956 - B1F1 SINE Alu -7 142 2 5 1186 287 270 149 50 chr3 78880865 78881087 -80718696 + Kanga2_a DNA Tc2 619 862 -26 5 1186 974 271 185 17 chr3 78881935 78882678 -80717105 + L1MA5A LINE L1 5133 6019 -281 5 1186 408 254 159 0 chr3 78883433 78883559 -80716224 + RSINE1 SINE B4 4 149 -16 5 1186 774 67 0 0 chr3 78883611 78883715 -80716068 + B1_Mus2 SINE Alu 44 147 0 5 1186 22 70 0 0 chr3 78883718 78883761 -80716022 + AT_rich Low_complexity Low_complexity 1 43 0 5 1186 416 325 40 0 chr3 78884048 78884199 -80715584 - B3A SINE B2 -41 157 1 5 1186 278 323 20 20 chr3 78884413 78884511 -80715272 - PB1 SINE Alu -19 108 11 5 1186 379 95 156 21 chr3 78885645 78885763 -80714020 - B2_Mm2 SINE B2 0 195 45 5 1186 1150 83 76 12 chr3 78885791 78885962 -80713821 - B2_Mm2 SINE B2 -12 183 2 5 1186 273 98 0 0 chr3 78887757 78887798 -80711985 + (TTCA)n Simple_repeat Simple_repeat 1 41 0 5 1186 450 309 13 13 chr3 78887810 78887964 -80711819 - RSINE1 SINE B4 0 165 12 5 1186 2492 217 89 68 chr3 78887971 78888648 -80711135 + MMAR1 DNA Mariner 590 1280 -6 5 1186 213 195 0 0 chr3 78888756 78888797 -80710986 - B4A SINE B4 -249 43 3 5 1186 279 280 106 11 chr3 78888830 78888924 -80710859 + PB1D10 SINE Alu 5 107 -10 5 1186 2324 88 6 3 chr3 78888934 78889252 -80710531 - ORR1A2 LTR MaLR -8 319 1 5 1186 186 43 0 0 chr3 78889366 78889389 -80710394 + (CA)n Simple_repeat Simple_repeat 2 24 0 5 1186 731 144 0 43 chr3 78889442 78889630 -80710153 + (TA)n Simple_repeat Simple_repeat 1 180 0 5 1186 218 320 0 39 chr3 78890556 78890634 -80709149 + RSINE1 SINE B4 91 165 0 5 1186 288 120 0 0 chr3 78890634 78890684 -80709099 + (CA)n Simple_repeat Simple_repeat 1 50 0 5 1186 870 260 50 10 chr3 78890755 78890953 -80708830 - B3 SINE B2 -10 206 1 5 1186 21 0 0 0 chr3 78892737 78892758 -80707025 + AT_rich Low_complexity Low_complexity 1 21 0 5 1186 1193 58 0 0 chr3 78893943 78894080 -80705703 + B1_Mus2 SINE Alu 2 138 -9 5 1186 372 294 33 46 chr3 78894885 78895038 -80704745 - B4A SINE B4 -139 153 3 5 1186 1186 258 3 64 chr3 78897196 78897507 -80702276 + B4A SINE B4 1 292 0 5 1186 7971 64 11 0 chr3 78899371 78900816 -80698967 + L1_Mus2 LINE L1 5107 6566 0 5 1186 369 0 0 0 chr3 78901163 78901204 -80698579 + (TG)n Simple_repeat Simple_repeat 2 42 0 5 1186 1183 287 78 49 chr3 78901348 78902056 -80697727 + L1M3 LINE L1 3936 4663 -1477 5 1186 185 159 23 0 chr3 78902452 78902496 -80697287 + CT-rich Low_complexity Low_complexity 1 45 0 5 1186 243 274 67 27 chr3 78902730 78902805 -80696978 + ID4_ SINE ID 3 80 -3 5 1186 2813 122 14 0 chr3 78903209 78903636 -80696147 + L1Md_F LINE L1 640 1072 -5447 6 1186 1680 52 61 0 chr3 78903636 78903848 -80695935 + L1_Mus2 LINE L1 6341 6565 -1 6 1186 405 271 20 20 chr3 78904572 78904670 -80695113 + B3A SINE B2 1 98 -100 6 1187 243 259 91 106 chr3 78905418 78905617 -80694166 + RMER15 LTR ERVL 23 218 -357 6 1187 529 201 140 15 chr3 78905661 78905797 -80693986 + RMER15 LTR ERVL 423 575 0 6 1187 442 190 138 0 chr3 78906535 78906651 -80693132 - MTC-int LTR MaLR -1124 134 3 6 1187 522 238 103 20 chr3 78906662 78906808 -80692975 - MTD LTR MaLR -63 356 199 6 1187 543 277 122 10 chr3 78906810 78907007 -80692776 - Lx6 LINE L1 -1 7459 7241 6 1187 675 285 10 10 chr3 78907010 78907205 -80692578 - MTD LTR MaLR -212 207 13 6 1187 282 322 11 11 chr3 78907231 78907325 -80692458 + PB1D10 SINE Alu 22 115 -2 6 1187 258 32 0 0 chr3 78907346 78907377 -80692406 + (CAT)n Simple_repeat Simple_repeat 1 31 0 6 1187 201 170 18 36 chr3 78908562 78908617 -80691166 + (TA)n Simple_repeat Simple_repeat 2 55 0 6 1187 564 97 0 0 chr3 78908617 78908710 -80691073 + (CA)n Simple_repeat Simple_repeat 1 93 0 6 1187 195 42 0 0 chr3 78908924 78908948 -80690835 + (CCCTAA)n Simple_repeat Simple_repeat 5 28 0 6 1187 253 272 170 30 chr3 78909207 78909428 -80690355 - MIRb SINE MIR 0 262 3 6 1187 439 246 26 43 chr3 78909503 78909618 -80690165 - PB1 SINE Alu -10 117 5 6 1187 504 244 24 0 chr3 78909751 78909878 -80689905 + L1M3 LINE L1 5343 5472 -708 6 1187 207 254 0 0 chr3 78909881 78909944 -80689839 + (TA)n Simple_repeat Simple_repeat 2 64 0 6 1187 564 267 22 80 chr3 78910384 78910608 -80689175 - B3 SINE B2 -5 211 1 6 1187 1036 195 0 143 chr3 78910859 78911110 -80688673 - B3 SINE B2 0 216 2 6 1187 497 297 56 50 chr3 78911617 78911779 -80688004 + B3 SINE B2 2 163 -35 6 1187 282 275 0 0 chr3 78911782 78911862 -80687921 + GA-rich Low_complexity Low_complexity 1 80 0 6 1187 428 296 147 7 chr3 78911958 78912101 -80687682 + RSINE1 SINE B4 3 165 0 6 1187 670 248 84 44 chr3 78912217 78912466 -80687317 + RMER5 LTR ERV1 1 259 -275 6 1187 2185 146 43 39 chr3 78912481 78912895 -80686888 - MTC LTR MaLR -5 416 1 6 1187 815 224 89 28 chr3 78912895 78913133 -80686650 + RMER5 LTR ERV1 282 534 0 6 1187 930 258 192 32 chr3 78913448 78913796 -80685987 - MTD LTR MaLR -15 404 1 6 1187 627 14 0 0 chr3 78913991 78914063 -80685720 + (TA)n Simple_repeat Simple_repeat 2 73 0 6 1187 829 198 78 11 chr3 78914169 78914348 -80685435 + B3 SINE B2 12 202 -14 6 1187 195 42 0 0 chr3 78914355 78914379 -80685404 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 6 1187 27 0 0 0 chr3 78915019 78915046 -80684737 + AT_rich Low_complexity Low_complexity 1 27 0 6 1187 24 0 0 0 chr3 78915338 78915362 -80684421 + AT_rich Low_complexity Low_complexity 1 24 0 6 1187 831 137 0 0 chr3 78915422 78915546 -80684237 + B1_Mus2 SINE Alu 22 145 -2 6 1187 255 233 82 16 chr3 78915679 78915740 -80684043 + RMER5 LTR ERV1 430 494 -40 6 1187 246 143 0 0 chr3 78916794 78916843 -80682940 + (CA)n Simple_repeat Simple_repeat 1 49 0 6 1187 368 281 0 0 chr3 78917098 78917187 -80682596 - PB1D9 SINE Alu -10 110 22 6 1187 217 244 6 115 chr3 78918341 78918431 -80681352 - L2c LINE L2 -5 3382 3279 6 1187 230 324 32 80 chr3 78919217 78919243 -80680540 - B2_Mm1t SINE B2 -11 182 55 6 1187 568 318 7 19 chr3 78919243 78919397 -80680386 - RSINE1 SINE B4 0 165 14 6 1187 279 0 0 0 chr3 78919584 78919615 -80680168 + (TTTTG)n Simple_repeat Simple_repeat 3 33 0 6 1187 596 123 0 0 chr3 78919615 78919696 -80680087 - B1_Mur2 SINE Alu -12 137 57 6 1187 527 184 63 18 chr3 78919809 78919920 -80679863 - PB1D9 SINE Alu 0 120 5 6 1187 1058 238 0 19 chr3 78920022 78920228 -80679555 + B3 SINE B2 1 202 -14 6 1187 384 325 9 0 chr3 78921180 78921294 -80678489 - PB1D10 SINE Alu -1 116 2 6 1187 270 264 81 9 chr3 78921507 78921618 -80678165 + B1F SINE Alu 13 131 -18 6 1187 411 92 0 0 chr3 78921635 78921700 -80678083 + (GA)n Simple_repeat Simple_repeat 1 65 0 6 1187 265 300 86 0 chr3 78922067 78922137 -80677646 - ID4 SINE ID -7 76 1 6 1187 494 250 195 13 chr3 78923402 78923556 -80676227 - ID_B1 SINE B4 -22 202 21 6 1187 291 226 113 0 chr3 78923505 78923567 -80676216 - ID4 SINE ID -13 70 2 6 1187 272 264 174 43 chr3 78923904 78924019 -80675764 - MIR SINE MIR -28 234 105 6 1187 382 271 102 81 chr3 78924708 78924993 -80674790 + B4A SINE B4 2 292 0 6 1187 248 229 114 0 chr3 78925645 78925715 -80674068 - MER2 DNA MER2_type -145 200 123 6 1187 353 321 86 56 chr3 78925928 78926126 -80673657 + MLT1J2 LTR MaLR 9 212 -236 6 1187 494 93 12 0 chr3 78927829 78927915 -80671868 + (CA)n Simple_repeat Simple_repeat 1 87 0 6 1187 218 105 26 0 chr3 78929513 78929551 -80670232 + (CCAA)n Simple_repeat Simple_repeat 2 40 0 6 1187 1130 133 102 56 chr3 78930062 78930277 -80669506 - URR1A DNA MER1_type 0 226 2 6 1187 225 0 0 0 chr3 78930454 78930479 -80669304 + (CCCA)n Simple_repeat Simple_repeat 1 25 0 6 1187 24 0 0 0 chr3 78931310 78931334 -80668449 + AT_rich Low_complexity Low_complexity 1 24 0 6 1187 186 43 0 0 chr3 78931334 78931357 -80668426 + (ATG)n Simple_repeat Simple_repeat 2 24 0 6 1187 2552 178 34 22 chr3 78931419 78931751 -80668032 + Lx9 LINE L1 7131 7476 -168 6 1187 231 36 0 0 chr3 78931751 78931779 -80668004 + (TG)n Simple_repeat Simple_repeat 2 29 0 6 1187 2552 178 34 22 chr3 78931779 78931946 -80667837 + Lx9 LINE L1 7477 7636 -8 6 1187 252 0 0 0 chr3 78933110 78933138 -80666645 + (TG)n Simple_repeat Simple_repeat 2 29 0 6 1187 192 152 0 0 chr3 78934343 78934376 -80665407 + CT-rich Low_complexity Low_complexity 1 33 0 6 1187 691 254 7 0 chr3 78935050 78935192 -80664591 + B1F1 SINE Alu 2 144 -5 6 1187 1776 96 93 64 chr3 78935595 78935907 -80663876 + ORR1A4 LTR MaLR 1 321 -8 6 1187 199 252 182 27 chr3 78935967 78936077 -80663706 - MIRc SINE MIR -74 194 68 6 1187 316 258 0 0 chr3 78936163 78936225 -80663558 - ID4 SINE ID -20 63 2 6 1187 198 0 0 0 chr3 78936225 78936247 -80663536 + (TG)n Simple_repeat Simple_repeat 1 22 0 6 1187 269 275 90 15 chr3 78936273 78936406 -80663377 - RMER12 LTR ERVK -466 856 714 6 1187 255 260 38 49 chr3 78936443 78936565 -80663218 - ORR1E LTR MaLR -189 181 71 6 1187 279 263 30 50 chr3 78936607 78936707 -80663076 - ORR1E LTR MaLR -261 98 1 6 1187 239 286 86 16 chr3 78937570 78937640 -80662143 - ID4_ SINE ID -69 83 9 6 1187 257 307 86 17 chr3 78938096 78938212 -80661571 + Kanga11a DNA Tc2 5 128 -842 6 1187 429 284 8 41 chr3 78938990 78939111 -80660672 - PB1D10 SINE Alu 0 117 1 6 1187 205 171 0 0 chr3 78939123 78939158 -80660625 + (CCCCAA)n Simple_repeat Simple_repeat 1 35 0 6 1187 495 122 0 68 chr3 78939159 78939247 -80660536 - B1_Mur3 SINE Alu -62 87 6 6 1187 410 179 48 3 chr3 78939768 78939866 -80659917 - PB1D9 SINE Alu -8 112 10 6 1187 28 29 0 0 chr3 78940144 78940179 -80659604 + AT_rich Low_complexity Low_complexity 1 35 0 6 1187 660 159 110 8 chr3 78940195 78940322 -80659461 + B1_Mur3 SINE Alu 10 149 0 6 1187 826 227 10 66 chr3 78940359 78940557 -80659226 - B3A SINE B2 -11 187 1 6 1187 245 371 17 17 chr3 78940681 78940859 -80658924 + (TATATG)n Simple_repeat Simple_repeat 3 180 0 6 1187 279 79 0 0 chr3 78941762 78941800 -80657983 + (TC)n Simple_repeat Simple_repeat 1 38 0 6 1187 228 143 0 0 chr3 78941799 78941841 -80657942 + (CA)n Simple_repeat Simple_repeat 1 42 0 6 1187 663 227 0 0 chr3 78942277 78942405 -80657378 + B1_Mur4 SINE Alu 22 149 -1 6 1187 205 200 20 0 chr3 78942406 78942456 -80657327 + A-rich Low_complexity Low_complexity 3 53 0 6 1187 294 246 33 0 chr3 78942749 78942810 -80656973 - tRNA-Ala-GCY_ tRNA tRNA -10 65 3 6 1187 396 0 0 0 chr3 78942904 78942948 -80656835 + (TAAA)n Simple_repeat Simple_repeat 2 45 0 6 1187 246 32 0 0 chr3 78943711 78943742 -80656041 + (T)n Simple_repeat Simple_repeat 1 31 0 6 1187 1361 27 0 0 chr3 78943742 78943889 -80655894 - B1_Mus2 SINE Alu 0 147 1 6 1187 216 191 0 45 chr3 78944579 78944623 -80655160 + B1F SINE Alu 19 60 -89 6 1187 339 85 0 0 chr3 78944645 78944692 -80655091 + (GAA)n Simple_repeat Simple_repeat 1 47 0 6 1187 266 286 0 16 chr3 78944705 78944769 -80655014 + tRNA-Ala-GCY_ tRNA tRNA 2 64 -11 6 1187 277 213 213 0 chr3 78944768 78944829 -80654954 + ID_B1 SINE B4 92 165 -59 6 1187 217 244 174 109 chr3 78944829 78944860 -80654923 + PB1D10 SINE Alu 11 108 -9 6 1187 267 286 0 14 chr3 78944864 78944935 -80654848 + G-rich Low_complexity Low_complexity 6 75 0 6 1187 252 277 15 0 chr3 78945162 78945227 -80654556 + PB1 SINE Alu 1 66 -61 6 1187 202 280 148 33 chr3 78945713 78945835 -80653948 + MIRc SINE MIR 122 260 -8 6 1187 293 188 125 0 chr3 78946127 78946191 -80653592 - PB1D10 SINE Alu -8 109 38 6 1187 204 40 0 0 chr3 78946285 78946310 -80653473 + (TTGG)n Simple_repeat Simple_repeat 2 26 0 6 1187 240 214 0 0 chr3 78947951 78948007 -80651776 + (CATATA)n Simple_repeat Simple_repeat 4 59 0 6 1187 213 39 0 0 chr3 78948602 78948628 -80651155 + (TCCC)n Simple_repeat Simple_repeat 2 27 0 6 1187 309 51 0 0 chr3 78949594 78949633 -80650150 + (CA)n Simple_repeat Simple_repeat 2 40 0 6 1187 543 69 0 0 chr3 78950334 78950406 -80649377 + (CA)n Simple_repeat Simple_repeat 1 72 0 6 1187 424 281 73 27 chr3 78951475 78951625 -80648158 + RSINE1 SINE B4 3 159 -6 6 1187 432 255 116 76 chr3 78952132 78952476 -80647307 + L1MB3 LINE L1 5751 6108 -63 7 1187 23 0 0 0 chr3 78953326 78953349 -80646434 + AT_rich Low_complexity Low_complexity 1 23 0 7 1187 3670 27 0 7 chr3 78953420 78953826 -80645957 - L1Md_F2 LINE L1 -7 6575 6173 7 1187 309 253 0 13 chr3 78954229 78954305 -80645478 + B4A SINE B4 1 75 -217 7 1187 223 291 152 19 chr3 78954305 78954334 -80645449 + B3A SINE B2 1 119 -79 7 1187 1019 114 112 6 chr3 78954412 78954669 -80645114 + RMER6D LTR ERVK 3 327 -393 7 1187 1311 67 17 6 chr3 78954668 78954849 -80644934 - B2_Mm2 SINE B2 -3 192 10 7 1187 310 261 16 16 chr3 78954869 78954990 -80644793 + (CAGTT)n Simple_repeat Simple_repeat 2 122 0 7 1187 936 175 69 43 chr3 78955015 78955248 -80644535 + RMER6D LTR ERVK 473 711 -45 7 1187 907 161 52 81 chr3 78955224 78955434 -80644349 + RMER6D LTR ERVK 517 720 0 7 1187 3776 18 0 0 chr3 78955449 78955845 -80643938 + MTA_Mm LTR MaLR 1 396 0 7 1187 323 258 114 28 chr3 78955881 78955993 -80643790 + B3A SINE B2 78 196 -20 7 1187 397 189 0 86 chr3 78956061 78956142 -80643641 - tRNA-Ala-GCY_ tRNA tRNA 0 75 2 7 1187 792 103 0 0 chr3 78956303 78956419 -80643364 + (GGA)n Simple_repeat Simple_repeat 2 117 0 7 1187 353 367 0 16 chr3 78956422 78956544 -80643239 - ID_B1 SINE B4 -19 205 86 7 1187 816 195 42 10 chr3 78958108 78958300 -80641483 - Lx7 LINE L1 -496 7200 7003 7 1187 1491 225 29 39 chr3 78958297 78958708 -80641075 + Lx7 LINE L1 7267 7673 -23 7 1187 252 0 0 0 chr3 78958713 78958741 -80641042 + (A)n Simple_repeat Simple_repeat 1 28 0 7 1187 22 0 0 0 chr3 78958797 78958819 -80640964 + AT_rich Low_complexity Low_complexity 1 22 0 7 1187 296 262 0 70 chr3 78958929 78959015 -80640768 - PB1 SINE Alu -2 125 46 7 1187 337 279 23 62 chr3 78959439 78959569 -80640214 - PB1 SINE Alu 0 127 3 7 1187 699 288 139 31 chr3 78959745 78959934 -80639849 + B4 SINE B4 3 219 -73 7 1187 866 78 28 0 chr3 78959934 78960075 -80639708 + (TGGA)n Simple_repeat Simple_repeat 2 146 0 7 1187 699 288 139 31 chr3 78960075 78960143 -80639640 + B4 SINE B4 220 288 -4 7 1187 6448 197 102 28 chr3 78960382 78963108 -80636675 - L1_Mur3 LINE L1 -2662 3215 276 7 1187 229 342 0 75 chr3 78963121 78963241 -80636542 + Charlie1a DNA MER1_type 1032 1142 -313 7 1187 225 0 0 0 chr3 78963360 78963385 -80636398 + (TTTTA)n Simple_repeat Simple_repeat 3 27 0 7 1187 527 257 183 12 chr3 78963385 78963554 -80636229 - B3 SINE B2 -18 198 1 7 1187 189 107 0 0 chr3 78963595 78963623 -80636160 + (T)n Simple_repeat Simple_repeat 1 28 0 7 1187 298 208 0 0 chr3 78963637 78963690 -80636093 - B1_Mur4 SINE Alu -4 146 94 7 1187 252 0 0 0 chr3 78965286 78965314 -80634469 + (GA)n Simple_repeat Simple_repeat 2 29 0 7 1187 598 286 58 10 chr3 78966185 78966393 -80633390 + ID_B1 SINE B4 2 219 -5 7 1187 242 56 28 0 chr3 78966484 78966520 -80633263 + (CATA)n Simple_repeat Simple_repeat 4 40 0 7 1187 243 0 0 0 chr3 78966549 78966576 -80633207 + (CA)n Simple_repeat Simple_repeat 2 28 0 7 1187 893 224 44 19 chr3 78966706 78966911 -80632872 - B3 SINE B2 -6 210 1 7 1187 917 98 7 15 chr3 78967076 78967211 -80632572 + B1_Mus2 SINE Alu 13 146 -1 7 1187 1300 128 31 0 chr3 78967386 78967582 -80632201 - L1_Mur2 LINE L1 -1322 4555 4354 7 1187 7190 113 61 19 chr3 78967579 78969580 -80630203 + Lx LINE L1 4610 6649 -5 7 1187 22 80 0 0 chr3 78969971 78970021 -80629762 + AT_rich Low_complexity Low_complexity 1 50 0 7 1187 595 78 10 0 chr3 78970374 78970477 -80629306 + RMER17B LTR ERVK 314 417 -541 7 1187 611 176 146 39 chr3 78970736 78970866 -80628917 + B1_Mur1 SINE Alu 4 147 -2 7 1187 362 233 22 11 chr3 78972161 78972252 -80627531 + B4A SINE B4 2 93 -199 7 1187 744 256 34 0 chr3 78972271 78972447 -80627336 + B3 SINE B2 30 211 -5 7 1187 531 275 69 45 chr3 78972475 78972677 -80627106 + B4A SINE B4 85 291 -1 7 1187 243 0 0 0 chr3 78973333 78973360 -80626423 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 7 1187 31 44 0 0 chr3 78974073 78974118 -80625665 + AT_rich Low_complexity Low_complexity 1 45 0 7 1187 24 53 0 0 chr3 78974230 78974268 -80625515 + AT_rich Low_complexity Low_complexity 1 38 0 7 1187 413 279 56 28 chr3 78974744 78974888 -80624895 - B1_Mur1 SINE Alu -1 148 1 7 1187 3415 43 5 8 chr3 78975315 78975712 -80624071 + MTA_Mm LTR MaLR 1 396 0 7 1187 1074 143 6 0 chr3 78975746 78975914 -80623869 + B2_Mm1t SINE B2 3 171 -22 7 1187 355 120 12 34 chr3 78975964 78976030 -80623753 + B2_Mm2 SINE B2 46 115 -83 7 1187 384 22 0 0 chr3 78976031 78976076 -80623707 + (TG)n Simple_repeat Simple_repeat 2 46 0 7 1187 25 31 0 0 chr3 78976076 78976108 -80623675 + AT_rich Low_complexity Low_complexity 1 32 0 7 1187 348 248 25 125 chr3 78976573 78976629 -80623154 + PB1D9 SINE Alu 3 49 -71 7 1187 180 0 0 0 chr3 78976629 78976649 -80623134 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 7 1187 348 248 25 125 chr3 78976649 78976712 -80623071 + PB1D9 SINE Alu 50 110 -10 7 1187 198 0 0 0 chr3 78977526 78977548 -80622235 + (A)n Simple_repeat Simple_repeat 1 22 0 7 1187 198 0 0 0 chr3 78977705 78977727 -80622056 + (A)n Simple_repeat Simple_repeat 1 22 0 7 1187 221 167 0 0 chr3 78977803 78977845 -80621938 + T-rich Low_complexity Low_complexity 1 42 0 7 1187 1239 82 0 0 chr3 78977845 78977992 -80621791 - B1_Mus2 SINE Alu 0 147 1 7 1187 213 39 0 0 chr3 78979555 78979581 -80620202 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 7 1187 355 245 32 0 chr3 78979980 78980074 -80619709 - L1MA4 LINE L1 -373 5927 5831 7 1187 231 250 17 0 chr3 78981698 78981758 -80618025 + L1M3 LINE L1 5682 5742 -438 7 1187 274 330 0 49 chr3 78981820 78981922 -80617861 - PB1D10 SINE Alu -20 97 1 7 1187 527 244 88 19 chr3 78981923 78982128 -80617655 + L1MB8 LINE L1 5791 6009 -169 7 1187 305 164 29 68 chr3 78983505 78983790 -80615993 + (CACAA)n Simple_repeat Simple_repeat 1 273 0 7 1187 378 85 0 0 chr3 78984752 78984811 -80614972 + (TG)n Simple_repeat Simple_repeat 2 60 0 7 1187 215 301 0 76 chr3 78986939 78987018 -80612765 + B4 SINE B4 6 78 -214 7 1187 265 290 152 48 chr3 78986988 78987093 -80612690 + RSINE1 SINE B4 50 165 0 7 1187 248 307 106 32 chr3 78987115 78987361 -80612422 + L1M4 LINE L1 4899 5162 -984 7 1187 589 260 7 37 chr3 78987377 78987513 -80612270 + RSINE1 SINE B4 1 132 -33 7 1187 282 87 0 0 chr3 78987543 78987589 -80612194 + (CA)n Simple_repeat Simple_repeat 1 46 0 7 1187 997 110 12 260 chr3 78987611 78987857 -80611926 - B2_Mm2 SINE B2 -9 186 2 7 1187 2570 65 3 0 chr3 78988002 78988327 -80611456 + Lx LINE L1 6128 6453 -201 7 1187 289 163 78 44 chr3 78988319 78988409 -80611374 + Lx LINE L1 6558 6650 -4 7 1187 23 0 0 0 chr3 78988860 78988883 -80610900 + AT_rich Low_complexity Low_complexity 1 23 0 7 1187 336 102 0 0 chr3 78989821 78989870 -80609913 + (TG)n Simple_repeat Simple_repeat 2 50 0 7 1187 613 190 14 68 chr3 78990162 78990309 -80609474 + B1F2 SINE Alu 3 141 -8 7 1187 2092 166 135 110 chr3 78990463 78990983 -80608800 + MT2A LTR ERVL 1 533 0 7 1187 585 0 0 0 chr3 78991339 78991404 -80608379 + (GAAA)n Simple_repeat Simple_repeat 2 66 0 7 1187 417 236 221 31 chr3 78993374 78993501 -80606282 - B3 SINE B2 -65 151 1 7 1187 21 0 0 0 chr3 78993686 78993707 -80606076 + AT_rich Low_complexity Low_complexity 1 21 0 7 1187 486 297 90 6 chr3 78994524 78994680 -80605103 + B4A SINE B4 2 170 -122 7 1187 788 200 0 0 chr3 78994846 78994981 -80604802 - B1_Mur2 SINE Alu -6 143 9 7 1187 249 206 0 150 chr3 78994910 78994990 -80604793 - MT2B2 LTR ERVL -350 234 167 7 1187 22 35 0 0 chr3 78995305 78995334 -80604449 + AT_rich Low_complexity Low_complexity 1 29 0 7 1187 204 40 0 0 chr3 78996398 78996423 -80603360 + (CAAAAA)n Simple_repeat Simple_repeat 2 26 0 7 1187 577 313 13 20 chr3 78998816 78998969 -80600814 - B3A SINE B2 -19 179 28 7 1187 234 0 0 0 chr3 79000258 79000284 -80599499 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 1 1187 698 126 29 0 chr3 79000295 79000398 -80599385 + U6 snRNA snRNA 1 106 -1 2 1187 3141 135 67 53 chr3 79000398 79000978 -80598805 + Lx2 LINE L1 6409 6996 -1 3 1187 710 295 0 28 chr3 79001558 79001771 -80598012 - B3 SINE B2 -7 209 3 4 1187 189 0 0 0 chr3 79001814 79001835 -80597948 + (CCCCCA)n Simple_repeat Simple_repeat 2 22 0 5 1187 2281 156 71 13 chr3 79004300 79004696 -80595087 + MTC LTR MaLR 3 421 0 6 1187 436 289 17 34 chr3 79006038 79006156 -80593627 - RSINE1 SINE B4 -47 118 3 7 1187 26 50 0 0 chr3 79007679 79007719 -80592064 + AT_rich Low_complexity Low_complexity 1 40 0 8 1187 340 241 194 0 chr3 79007846 79007954 -80591829 + PB1D7 SINE Alu 12 140 -9 9 1187 360 0 0 0 chr3 79007954 79007994 -80591789 + (TGAG)n Simple_repeat Simple_repeat 3 42 0 1 1187 416 19 0 19 chr3 79009593 79009647 -80590136 + (TG)n Simple_repeat Simple_repeat 2 54 0 1 1187 25 0 0 0 chr3 79009937 79009962 -80589821 + AT_rich Low_complexity Low_complexity 1 25 0 1 1187 384 328 78 78 chr3 79010026 79010294 -80589489 - B4A SINE B4 -23 269 2 1 1187 915 264 32 78 chr3 79010336 79010710 -80589073 + MTE2a LTR MaLR 4 360 -19 1 1187 256 294 27 27 chr3 79010858 79010970 -80588813 - PB1D10 SINE Alu -2 115 4 1 1187 189 0 0 0 chr3 79011012 79011033 -80588750 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 1 1187 1374 76 32 0 chr3 79011646 79011831 -80587952 - B2_Mm2 SINE B2 -4 191 1 1 1187 1218 99 27 11 chr3 79012207 79012237 -80587546 - B2_Mm2 SINE B2 -8 187 154 1 1187 456 19 0 0 chr3 79012237 79012290 -80587493 + (TA)n Simple_repeat Simple_repeat 2 54 0 1 1187 1218 99 27 11 chr3 79012290 79012442 -80587341 - B2_Mm2 SINE B2 -42 153 2 1 1187 1568 42 10 5 chr3 79015933 79016125 -80583658 - B2_Mm2 SINE B2 -1 194 2 2 1187 185 100 0 91 chr3 79016462 79016506 -80583277 - MIRc SINE MIR -122 146 107 2 1187 221 308 26 0 chr3 79016665 79016743 -80583040 + ID4_ SINE ID 3 82 -1 2 1187 737 199 7 34 chr3 79017547 79017693 -80582090 + B1_Mur4 SINE Alu 1 142 -8 2 1187 369 109 0 0 chr3 79017702 79017757 -80582026 + (GGA)n Simple_repeat Simple_repeat 3 57 0 2 1187 1154 88 0 0 chr3 79018414 79018562 -80581221 + B1_Mus1 SINE Alu 1 148 0 2 1187 291 157 0 0 chr3 79019059 79019110 -80580673 + (CA)n Simple_repeat Simple_repeat 2 52 0 2 1187 925 208 134 52 chr3 79019607 79019759 -80580024 + RMER17C LTR ERVK 16 165 -245 2 1187 342 0 0 0 chr3 79019759 79019797 -80579986 + (CA)n Simple_repeat Simple_repeat 1 38 0 2 1187 925 208 134 52 chr3 79019797 79020009 -80579774 + RMER17C LTR ERVK 166 409 -1 2 1187 198 0 0 0 chr3 79021106 79021128 -80578655 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 2 1187 679 244 39 39 chr3 79021175 79021380 -80578403 - B3 SINE B2 -8 208 4 3 1187 186 71 0 0 chr3 79021418 79021446 -80578337 + (TTG)n Simple_repeat Simple_repeat 2 29 0 3 1187 1036 100 0 0 chr3 79021446 79021586 -80578197 - B1_Mus1 SINE Alu -8 140 1 3 1187 444 37 0 0 chr3 79021858 79021912 -80577871 + (GGAA)n Simple_repeat Simple_repeat 3 56 0 3 1187 205 161 0 0 chr3 79021913 79021944 -80577839 + (TAGA)n Simple_repeat Simple_repeat 2 32 0 3 1187 3299 48 5 0 chr3 79023639 79024033 -80575750 + MTA_Mm LTR MaLR 1 396 0 3 1187 868 149 6 51 chr3 79024291 79024447 -80575336 - B1_Mur2 SINE Alu 0 149 1 3 1187 243 0 0 0 chr3 79024939 79024966 -80574817 + (CA)n Simple_repeat Simple_repeat 2 28 0 3 1187 344 121 340 0 chr3 79028872 79028978 -80570805 - B2_Mm2 SINE B2 -7 188 47 3 1187 933 108 7 0 chr3 79028994 79029133 -80570650 - B2_Mm1t SINE B2 -53 140 1 3 1187 213 47 22 44 chr3 79029696 79029741 -80570042 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 4 1187 320 294 24 0 chr3 79029832 79029958 -80569825 + L1MA8 LINE L1 4820 4948 -1195 4 1187 409 260 213 7 chr3 79030164 79030572 -80569211 + L1MA8 LINE L1 5100 5584 -716 4 1187 1154 68 7 0 chr3 79030595 79030741 -80569042 + B1_Mus2 SINE Alu 1 147 0 4 1187 567 132 0 0 chr3 79030741 79030832 -80568951 + (A)n Simple_repeat Simple_repeat 1 91 0 4 1187 854 269 192 32 chr3 79030836 79030976 -80568807 + L1MA8 LINE L1 5602 5779 -512 4 1187 994 94 0 27 chr3 79030976 79031161 -80568622 + (CA)n Simple_repeat Simple_repeat 1 180 0 4 1187 854 269 192 32 chr3 79031161 79031526 -80568257 + L1MA8 LINE L1 5780 6188 -103 4 1187 4221 80 42 11 chr3 79034000 79034566 -80565217 - MT2B2 LTR ERVL 0 584 1 4 1187 216 0 0 0 chr3 79034956 79034980 -80564803 + (CCCA)n Simple_repeat Simple_repeat 1 24 0 4 1187 454 279 6 4 chr3 79035256 79035381 -80564402 + Lx7 LINE L1 6439 6531 -1165 4 1187 1063 273 52 66 chr3 79035372 79035606 -80564177 + Lx7 LINE L1 6998 7236 -460 4 1187 2665 82 102 111 chr3 79035606 79036085 -80563698 + MT2C_Mm LTR ERVL 1 475 0 4 1187 1063 273 52 66 chr3 79036085 79036273 -80563510 + Lx7 LINE L1 7237 7414 -282 4 1188 837 169 14 40 chr3 79036449 79036597 -80563186 - B1_Mur4 SINE Alu -6 144 1 4 1188 34 65 0 0 chr3 79036675 79036737 -80563046 + AT_rich Low_complexity Low_complexity 1 62 0 5 1188 222 191 0 0 chr3 79037579 79037626 -80562157 + CT-rich Low_complexity Low_complexity 1 47 0 5 1188 23 54 0 0 chr3 79038775 79038812 -80560971 + AT_rich Low_complexity Low_complexity 1 37 0 5 1188 467 162 38 0 chr3 79039137 79039217 -80560566 + RSINE1 SINE B4 42 124 -41 5 1188 621 0 0 0 chr3 79039254 79039323 -80560460 + (GA)n Simple_repeat Simple_repeat 2 70 0 5 1188 850 153 195 5 chr3 79041306 79041496 -80558287 - URR1A DNA MER1_type 0 226 1 5 1188 1636 168 39 45 chr3 79041524 79041854 -80557929 - ORR1A4 LTR MaLR 0 329 2 5 1188 291 54 0 0 chr3 79042945 79042982 -80556801 + (TG)n Simple_repeat Simple_repeat 1 37 0 5 1188 315 0 0 0 chr3 79042982 79043016 -80556767 + (GA)n Simple_repeat Simple_repeat 1 35 0 5 1188 268 214 56 14 chr3 79043501 79043572 -80556211 - MTD LTR MaLR -2 417 344 5 1188 4169 56 4 0 chr3 79043576 79044079 -80555704 - L1_Mus1 LINE L1 0 6567 6063 6 1188 249 282 0 53 chr3 79044105 79044180 -80555603 - MTD LTR MaLR -68 351 281 5 1188 211 0 0 81 chr3 79045056 79045093 -80554690 + (TTGG)n Simple_repeat Simple_repeat 2 35 0 6 1188 1134 58 0 0 chr3 79045093 79045232 -80554551 - B1_Mus1 SINE Alu -8 140 2 6 1188 315 0 0 0 chr3 79045593 79045628 -80554155 + (TTTTG)n Simple_repeat Simple_repeat 3 37 0 6 1188 252 0 0 0 chr3 79045650 79045678 -80554105 + (TTG)n Simple_repeat Simple_repeat 1 28 0 6 1188 266 102 0 75 chr3 79046588 79046641 -80553142 - URR1B DNA MER1_type 0 225 177 6 1188 310 224 112 0 chr3 79046942 79047040 -80552743 - URR1B DNA MER1_type -30 195 87 6 1188 263 186 0 0 chr3 79047038 79047081 -80552702 - URR1A DNA MER1_type -183 43 1 5 1188 290 221 38 25 chr3 79048166 79048245 -80551538 + B3A SINE B2 1 80 -118 6 1188 348 207 11 58 chr3 79048175 79048262 -80551521 + B4A SINE B4 11 93 -199 6 1188 352 241 11 0 chr3 79048272 79048359 -80551424 + RMER15-int LTR ERVL 4344 4431 -568 6 1188 1291 299 86 24 chr3 79048359 79048907 -80550876 + Lx8 LINE L1 6454 7035 -438 6 1188 245 211 0 101 chr3 79049052 79049131 -80550652 + RMER15 LTR ERVL 397 467 -108 6 1188 587 285 40 11 chr3 79049325 79049499 -80550284 + B4A SINE B4 110 288 -4 6 1188 706 233 41 0 chr3 79049745 79049891 -80549892 - RSINE1 SINE B4 -11 154 3 7 1188 23 0 0 0 chr3 79049988 79050011 -80549772 + AT_rich Low_complexity Low_complexity 1 23 0 7 1188 280 281 157 0 chr3 79050022 79050143 -80549640 + B1F1 SINE Alu 2 141 -8 7 1188 292 320 0 0 chr3 79050171 79050249 -80549534 + ID4_ SINE ID 4 81 -2 7 1188 183 100 0 0 chr3 79050432 79050462 -80549321 + (G)n Simple_repeat Simple_repeat 1 30 0 7 1188 358 267 0 71 chr3 79051378 79051491 -80548292 + PB1D10 SINE Alu 1 105 -12 7 1188 210 310 0 0 chr3 79051505 79051563 -80548220 + (CA)n Simple_repeat Simple_repeat 1 58 0 7 1188 253 122 24 0 chr3 79052136 79052177 -80547606 + L1MD3 LINE L1 7318 7359 -636 7 1188 227 235 80 34 chr3 79052295 79052383 -80547400 + L1MC3 LINE L1 7326 7417 -368 7 1188 260 280 8 48 chr3 79052701 79052825 -80546958 + PB1D7 SINE Alu 2 120 0 7 1188 630 299 42 26 chr3 79053011 79053276 -80546507 - B4A SINE B4 -19 273 5 8 1188 262 242 15 0 chr3 79053640 79053706 -80546077 - B1F1 SINE Alu -77 72 6 8 1188 273 289 182 4 chr3 79054483 79054719 -80545064 + L1M5 LINE L1 5372 5649 -475 8 1188 1450 212 86 17 chr3 79054750 79054905 -80544878 + ORR1C2 LTR MaLR 1 177 -207 8 1188 237 33 0 0 chr3 79054905 79054935 -80544848 + (TCTCTG)n Simple_repeat Simple_repeat 6 35 0 8 1188 1450 212 86 17 chr3 79054935 79055138 -80544645 + ORR1C2 LTR MaLR 178 384 0 8 1188 270 0 0 0 chr3 79055575 79055605 -80544178 + (TC)n Simple_repeat Simple_repeat 2 31 0 8 1188 189 0 0 0 chr3 79055605 79055626 -80544157 + (T)n Simple_repeat Simple_repeat 1 21 0 8 1188 1246 47 0 0 chr3 79055626 79055774 -80544009 - B1_Mus1 SINE Alu 0 148 1 8 1188 237 196 0 0 chr3 79056082 79056133 -80543650 + T-rich Low_complexity Low_complexity 1 51 0 8 1188 26 0 0 0 chr3 79056251 79056277 -80543506 + AT_rich Low_complexity Low_complexity 1 26 0 8 1188 483 207 126 0 chr3 79056376 79056487 -80543296 + RSINE1 SINE B4 16 140 -25 9 1188 414 39 0 0 chr3 79056487 79056539 -80543244 + (CA)n Simple_repeat Simple_repeat 1 52 0 9 1188 616 117 126 0 chr3 79056602 79056713 -80543070 + B1_Mus1 SINE Alu 24 148 0 9 1188 2107 125 3 3 chr3 79058074 79058412 -80541371 + ORR1A1 LTR MaLR 1 338 -8 9 1188 398 200 97 26 chr3 79058638 79058751 -80541032 + ID_B1 SINE B4 104 224 0 9 1188 285 253 0 60 chr3 79058962 79059046 -80540737 + Lx6 LINE L1 7382 7460 0 9 1188 338 320 33 22 chr3 79059649 79059831 -80539952 + MLT1A LTR MaLR 191 374 0 9 1188 2267 102 9 3 chr3 79060283 79060606 -80539177 + ORR1A2 LTR MaLR 3 327 0 9 1188 251 253 23 46 chr3 79061245 79061258 -80538525 - ID SINE ID -139 85 37 9 1188 289 269 0 0 chr3 79061258 79061325 -80538458 - tRNA-Ala-GCY_ tRNA tRNA -8 67 1 9 1188 767 246 37 50 chr3 79061682 79061900 -80537883 + B3 SINE B2 1 215 -1 1 1188 752 202 39 16 chr3 79061929 79062123 -80537660 + B3A SINE B2 17 211 -5 1 1188 278 172 31 15 chr3 79062245 79062310 -80537473 - B1_Mus2 SINE Alu -52 95 30 1 1188 613 251 79 44 chr3 79062348 79062577 -80537206 - Lx8 LINE L1 -4 7469 7233 1 1188 249 290 89 42 chr3 79062603 79062794 -80536989 + L1MD3 LINE L1 7786 7985 -10 1 1188 226 333 13 0 chr3 79062881 79062959 -80536824 - ID4 SINE ID -2 81 3 1 1188 709 237 22 6 chr3 79062993 79063169 -80536614 + L1MB7 LINE L1 5694 5874 -368 1 1188 237 200 30 15 chr3 79063260 79063326 -80536457 + L1MB7 LINE L1 6044 6110 -74 1 1188 728 250 74 57 chr3 79063345 79063574 -80536209 - B4A SINE B4 -58 234 2 1 1188 618 294 34 19 chr3 79063775 79063983 -80535800 + ID_B1 SINE B4 13 223 -1 1 1188 277 286 0 0 chr3 79064029 79064092 -80535691 + ID4_ SINE ID 1 63 -20 1 1188 222 118 0 0 chr3 79064563 79064597 -80535186 + (A)n Simple_repeat Simple_repeat 1 34 0 1 1188 21 0 0 0 chr3 79064609 79064630 -80535153 + AT_rich Low_complexity Low_complexity 1 21 0 1 1188 3061 73 2 22 chr3 79065081 79065485 -80534298 - MTA_Mm LTR MaLR 0 396 1 1 1188 484 283 42 35 chr3 79065629 79065772 -80534011 + B1F SINE Alu 1 144 -5 1 1188 222 91 0 0 chr3 79065831 79065864 -80533919 + (CAGAC)n Simple_repeat Simple_repeat 5 37 0 1 1188 300 91 0 0 chr3 79066315 79066359 -80533424 + (A)n Simple_repeat Simple_repeat 1 44 0 1 1188 239 136 0 17 chr3 79066496 79066556 -80533227 + (CAAA)n Simple_repeat Simple_repeat 4 62 0 1 1188 242 194 16 0 chr3 79066557 79066619 -80533164 + GA-rich Low_complexity Low_complexity 2 64 0 1 1188 680 191 91 216 chr3 79066750 79066876 -80532907 + B3 SINE B2 2 139 -77 1 1188 1372 80 5 11 chr3 79066876 79067065 -80532718 + B2_Mm1t SINE B2 1 188 -5 1 1188 680 191 91 216 chr3 79067065 79067179 -80532604 + B3 SINE B2 140 212 -4 1 1188 21 0 0 0 chr3 79067189 79067210 -80532573 + AT_rich Low_complexity Low_complexity 1 21 0 1 1188 719 184 79 22 chr3 79067318 79067457 -80532326 + B1_Mur3 SINE Alu 3 149 0 1 1188 207 213 0 21 chr3 79067469 79067517 -80532266 + (ATG)n Simple_repeat Simple_repeat 2 48 0 1 1188 21 0 0 0 chr3 79067680 79067701 -80532082 + AT_rich Low_complexity Low_complexity 1 21 0 1 1188 1082 240 93 31 chr3 79067810 79068197 -80531586 + MTD LTR MaLR 1 411 -8 1 1188 469 248 220 0 chr3 79068199 79068340 -80531443 + ID_B1 SINE B4 19 190 -34 1 1188 623 196 98 0 chr3 79068997 79069130 -80530653 - B1_Mur2 SINE Alu -2 147 2 1 1188 1829 135 32 65 chr3 79069486 79069763 -80530020 + ORR1A4 LTR MaLR 1 271 -58 1 1188 1237 41 0 0 chr3 79069763 79069910 -80529873 + B1_Mus2 SINE Alu 1 147 0 1 1188 1829 135 32 65 chr3 79069910 79069972 -80529811 + ORR1A4 LTR MaLR 272 329 0 1 1188 216 281 18 0 chr3 79071054 79071111 -80528672 + ID4 SINE ID 11 68 -15 1 1188 370 241 199 56 chr3 79073376 79073594 -80526189 + B4 SINE B4 44 292 0 1 1188 189 0 0 0 chr3 79073684 79073705 -80526078 + (A)n Simple_repeat Simple_repeat 1 21 0 1 1188 592 229 51 0 chr3 79073719 79073837 -80525946 + B1_Mur2 SINE Alu 4 127 -22 1 1188 446 136 0 12 chr3 79074536 79074618 -80525165 + (GGA)n Simple_repeat Simple_repeat 2 82 0 1 1188 492 48 0 0 chr3 79075818 79075881 -80523902 + (CAGA)n Simple_repeat Simple_repeat 2 64 0 1 1188 447 214 48 0 chr3 79075978 79076081 -80523702 + PB1D10 SINE Alu 10 117 0 1 1188 259 239 15 0 chr3 79076496 79076563 -80523220 + CT-rich Low_complexity Low_complexity 3 70 0 1 1188 228 111 0 0 chr3 79077309 79077345 -80522438 + (A)n Simple_repeat Simple_repeat 1 36 0 1 1188 186 191 0 0 chr3 79078073 79078120 -80521663 + (CATA)n Simple_repeat Simple_repeat 2 48 0 1 1188 391 299 42 85 chr3 79078214 79078426 -80521357 - B4A SINE B4 -68 224 22 1 1188 24 0 0 0 chr3 79078532 79078556 -80521227 + AT_rich Low_complexity Low_complexity 1 24 0 1 1188 263 182 0 29 chr3 79078944 79079012 -80520771 + GA-rich Low_complexity Low_complexity 1 66 0 1 1188 243 258 71 61 chr3 79079018 79079117 -80520666 + PB1D10 SINE Alu 1 100 -49 1 1188 599 217 148 123 chr3 79079387 79079671 -80520112 - B4A SINE B4 0 292 2 1 1188 1803 77 98 26 chr3 79080315 79080622 -80519161 + ORR1A4 LTR MaLR 1 329 0 1 1188 816 202 116 11 chr3 79080889 79081079 -80518704 + B3 SINE B2 1 210 -6 1 1188 310 304 143 14 chr3 79081258 79081398 -80518385 + B3A SINE B2 11 168 -30 1 1188 224 348 42 7 chr3 79082104 79082246 -80517537 + B1F SINE Alu 1 147 -2 1 1188 218 291 53 97 chr3 79082273 79082387 -80517396 + ID_B1 SINE B4 49 157 -67 1 1188 1377 58 10 36 chr3 79082507 79082703 -80517080 - B2_Mm2 SINE B2 -3 192 2 1 1188 204 171 24 0 chr3 79082814 79082855 -80516928 + (TA)n Simple_repeat Simple_repeat 1 42 0 1 1188 358 304 34 17 chr3 79082926 79083043 -80516740 + B3 SINE B2 64 182 -34 1 1188 549 270 0 20 chr3 79083135 79083286 -80516497 + B1F1 SINE Alu 1 148 -1 1 1188 315 85 0 0 chr3 79083741 79083788 -80515995 + (CA)n Simple_repeat Simple_repeat 1 47 0 1 1188 314 303 70 38 chr3 79083969 79084127 -80515656 - L1MC4a LINE L1 -240 7642 7480 1 1188 413 225 124 4 chr3 79084149 79084313 -80515470 - B3 SINE B2 -3 195 20 1 1188 601 233 6 84 chr3 79084688 79084866 -80514917 + MER44B DNA MER2_type 299 462 -88 1 1188 365 267 16 101 chr3 79085224 79085353 -80514430 + L1MD2 LINE L1 5882 5999 -360 1 1188 210 171 49 0 chr3 79085413 79085454 -80514329 + B1F1 SINE Alu 74 116 -33 1 1188 189 0 0 0 chr3 79085456 79085477 -80514306 + (CAAA)n Simple_repeat Simple_repeat 3 23 0 1 1188 231 261 0 0 chr3 79085789 79085858 -80513925 - RMER30 DNA MER1_type -1 201 133 1 1188 243 265 29 0 chr3 79085798 79085866 -80513917 + Charlie12 DNA MER1_type 10 79 -2794 1 1188 236 230 99 44 chr3 79086875 79086966 -80512817 + Tigger5 DNA MER2_type 37 132 -2274 1 1188 342 67 0 0 chr3 79088762 79088807 -80510976 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 1188 23 0 0 0 chr3 79091042 79091065 -80508718 + GC_rich Low_complexity Low_complexity 1 23 0 1 1188 21 57 0 0 chr3 79091296 79091331 -80508452 + GC_rich Low_complexity Low_complexity 1 35 0 1 1188 181 352 73 50 chr3 79092425 79092727 -80507056 + L2 LINE L2 2401 2709 -710 1 1188 512 106 12 0 chr3 79092765 79092850 -80506933 + (TTTC)n Simple_repeat Simple_repeat 3 88 0 1 1188 270 294 41 47 chr3 79092971 79093142 -80506641 + L2 LINE L2 2895 3064 -355 1 1188 218 277 60 12 chr3 79093575 79093659 -80506124 + MIR SINE MIR 175 262 0 1 1188 252 281 34 0 chr3 79093680 79093769 -80506014 - MIRc SINE MIR -86 182 91 1 1188 400 150 30 30 chr3 79094196 79094327 -80505456 + CT-rich Low_complexity Low_complexity 3 133 0 1 1188 24 0 0 0 chr3 79095611 79095635 -80504148 + AT_rich Low_complexity Low_complexity 1 24 0 1 1188 692 298 15 20 chr3 79095879 79096081 -80503702 + ID_B1 SINE B4 17 217 -7 1 1188 291 167 0 0 chr3 79096086 79096152 -80503631 + GA-rich Low_complexity Low_complexity 4 69 0 1 1188 387 239 103 55 chr3 79096176 79096322 -80503461 + RSINE1 SINE B4 9 161 -4 1 1188 442 333 38 30 chr3 79096520 79096653 -80503130 - RSINE1 SINE B4 -29 136 3 1 1188 861 246 57 131 chr3 79097427 79097833 -80501950 - MTE2a LTR MaLR 0 379 4 1 1188 180 392 9 0 chr3 79098352 79098459 -80501324 + MIRb SINE MIR 76 183 -85 1 1188 207 162 0 0 chr3 79099014 79099051 -80500732 + A-rich Low_complexity Low_complexity 4 40 0 1 1188 432 252 98 0 chr3 79099755 79099878 -80499905 + B1_Mur1 SINE Alu 10 144 -5 1 1188 206 206 14 0 chr3 79099882 79099955 -80499828 + GA-rich Low_complexity Low_complexity 1 74 0 1 1188 410 232 104 10 chr3 79101441 79101537 -80498246 - PB1D10 SINE Alu -11 106 2 1 1188 626 251 9 3 chr3 79102097 79102248 -80497535 - MTC LTR MaLR -207 200 60 1 1188 2077 91 32 0 chr3 79102252 79102560 -80497223 - ORR1A3 LTR MaLR -8 318 1 1 1188 370 154 0 0 chr3 79102560 79102624 -80497159 - MTC LTR MaLR -357 64 1 1 1188 611 206 16 124 chr3 79103470 79103720 -80496063 + ID_B1 SINE B4 1 223 -1 1 1188 544 180 0 75 chr3 79104203 79104323 -80495460 + PB1D9 SINE Alu 8 118 -2 1 1188 247 290 0 14 chr3 79104549 79104619 -80495164 + GA-rich Low_complexity Low_complexity 3 71 0 1 1188 290 87 22 0 chr3 79104706 79104752 -80495031 + (TA)n Simple_repeat Simple_repeat 2 48 0 1 1188 386 223 10 21 chr3 79105342 79105438 -80494345 + B4A SINE B4 180 274 -18 1 1188 263 359 17 8 chr3 79105539 79105657 -80494126 - B4A SINE B4 0 292 174 1 1188 759 246 5 69 chr3 79106569 79106632 -80493151 + ID SINE ID 4 57 -167 1 1188 1138 56 0 0 chr3 79106632 79106767 -80493016 + B1_Mm SINE Alu 4 138 -9 1 1188 356 0 0 22 chr3 79106767 79106812 -80492971 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 1 1188 759 246 5 69 chr3 79106818 79106844 -80492939 + ID SINE ID 58 81 -143 1 1188 387 306 45 0 chr3 79106844 79106955 -80492828 + B1F SINE Alu 1 116 -33 1 1188 216 0 0 0 chr3 79107010 79107034 -80492749 + (CAGG)n Simple_repeat Simple_repeat 4 27 0 1 1188 256 273 30 0 chr3 79107473 79107539 -80492244 + ID4 SINE ID 5 72 -11 1 1188 258 218 23 31 chr3 79107544 79107672 -80492111 + GA-rich Low_complexity Low_complexity 3 129 0 1 1188 1289 73 0 6 chr3 79107679 79107858 -80491925 + (GGGGA)n Simple_repeat Simple_repeat 1 178 0 1 1188 2222 190 79 17 chr3 79107990 79108461 -80491322 - RLTR18B LTR ERVK -12 500 1 1 1188 2877 106 17 35 chr3 79108692 79109153 -80490630 - RLTR11B LTR ERVK 0 453 1 1 1188 220 208 18 36 chr3 79109374 79109429 -80490354 + CT-rich Low_complexity Low_complexity 2 55 0 2 1188 180 152 0 0 chr3 79109469 79109502 -80490281 + CT-rich Low_complexity Low_complexity 1 33 0 2 1188 901 126 11 0 chr3 79109506 79109681 -80490102 + (TC)n Simple_repeat Simple_repeat 1 177 0 2 1188 904 133 0 11 chr3 79109696 79109878 -80489905 + (TC)n Simple_repeat Simple_repeat 1 180 0 2 1188 412 200 102 16 chr3 79109884 79110011 -80489772 - ID_B1 SINE B4 -7 217 80 2 1188 2016 160 34 64 chr3 79111924 79112312 -80487471 + ORR1C1 LTR MaLR 1 376 -2 2 1188 343 274 208 0 chr3 79113133 79113239 -80486544 - RSINE1 SINE B4 -27 138 11 2 1188 1607 249 101 30 chr3 79113656 79114322 -80485461 - Lx9 LINE L1 -1626 6018 5273 2 1188 240 86 0 0 chr3 79114584 79114619 -80485164 + (CA)n Simple_repeat Simple_repeat 2 36 0 2 1188 450 0 0 0 chr3 79114619 79114668 -80485115 + (GA)n Simple_repeat Simple_repeat 2 51 0 2 1188 216 0 0 0 chr3 79115378 79115402 -80484381 + (TTTG)n Simple_repeat Simple_repeat 4 27 0 2 1188 542 137 11 0 chr3 79115609 79115704 -80484079 + (TG)n Simple_repeat Simple_repeat 1 96 0 2 1188 466 285 8 15 chr3 79116006 79116138 -80483645 + B1F SINE Alu 2 132 -17 2 1188 338 259 204 0 chr3 79116246 79116354 -80483429 - ID_B1 SINE B4 -11 213 84 2 1188 241 343 28 9 chr3 79117269 79117378 -80482405 + PB1 SINE Alu 15 125 -2 2 1188 180 0 0 0 chr3 79117378 79117398 -80482385 + (A)n Simple_repeat Simple_repeat 1 20 0 2 1188 305 247 14 2 chr3 79117887 79117964 -80481819 + PB1D10 SINE Alu 9 91 -29 2 1188 582 284 20 13 chr3 79118601 79118751 -80481032 + RSINE1 SINE B4 15 165 0 2 1188 355 71 0 115 chr3 79118755 79118929 -80480854 + (CACAG)n Simple_repeat Simple_repeat 1 154 0 2 1188 671 206 23 30 chr3 79119023 79119172 -80480611 - B1_Mur2 SINE Alu -1 148 1 2 1188 1223 35 7 0 chr3 79119526 79119671 -80480112 + B1_Mm SINE Alu 2 147 0 2 1188 454 267 0 41 chr3 79121128 79121249 -80478534 - PB1D10 SINE Alu 0 117 2 2 1188 1109 151 61 38 chr3 79122833 79123113 -80476670 - ORR1D1 LTR MaLR 0 374 87 2 1188 238 262 0 0 chr3 79123115 79123176 -80476607 - ID2 SINE ID -8 75 15 2 1188 181 57 57 0 chr3 79123491 79123526 -80476257 + (TTTTTG)n Simple_repeat Simple_repeat 4 40 0 2 1188 838 147 21 7 chr3 79123540 79123684 -80476099 - B1_Mur4 SINE Alu -1 149 4 2 1188 303 71 0 0 chr3 79124927 79124969 -80474814 + (CA)n Simple_repeat Simple_repeat 1 42 0 2 1188 183 156 0 0 chr3 79124969 79125001 -80474782 + GA-rich Low_complexity Low_complexity 1 32 0 2 1188 306 0 0 0 chr3 79125273 79125307 -80474476 + (CA)n Simple_repeat Simple_repeat 2 35 0 2 1188 836 279 32 18 chr3 79125375 79125656 -80474127 + B4 SINE B4 2 286 -6 2 1188 2043 175 49 98 chr3 79125961 79126551 -80473232 + RLTR31_Mm LTR ERVK 1 561 0 2 1188 1229 48 0 0 chr3 79126914 79127060 -80472723 - B1_Mm SINE Alu 0 147 2 2 1188 628 217 164 11 chr3 79127110 79127287 -80472496 - B3 SINE B2 -12 204 1 2 1188 396 164 0 0 chr3 79127435 79127502 -80472281 - ID4_ SINE ID -13 70 4 2 1188 315 0 0 0 chr3 79128511 79128546 -80471237 + (CA)n Simple_repeat Simple_repeat 2 36 0 2 1188 324 275 9 29 chr3 79129834 79129939 -80469844 - PB1D7 SINE Alu -1 119 17 2 1188 288 262 96 10 chr3 79130052 79130156 -80469627 + PB1 SINE Alu 11 123 -4 2 1188 873 104 12 47 chr3 79131241 79131412 -80468371 + GA-rich Low_complexity Low_complexity 4 168 0 2 1188 512 198 327 13 chr3 79131696 79131855 -80467928 - B3 SINE B2 -6 210 2 2 1188 354 331 16 16 chr3 79131896 79132080 -80467703 - RMER15 LTR ERVL -54 521 338 2 1188 293 225 168 18 chr3 79132649 79132762 -80467021 - MER102a DNA MER1_type -114 216 87 2 1188 375 23 0 0 chr3 79133313 79133357 -80466426 + (TG)n Simple_repeat Simple_repeat 1 44 0 2 1188 500 263 0 8 chr3 79133687 79133821 -80465962 - RSINE1 SINE B4 -31 134 2 2 1188 203 32 65 0 chr3 79134423 79134454 -80465329 + (TAAAA)n Simple_repeat Simple_repeat 2 34 0 2 1188 26 0 0 0 chr3 79135078 79135104 -80464679 + AT_rich Low_complexity Low_complexity 1 26 0 2 1188 686 221 0 0 chr3 79135214 79135341 -80464442 + RSINE1 SINE B4 8 134 -31 2 1188 1552 53 5 0 chr3 79135499 79135689 -80464094 + B2_Mm1a SINE B2 1 191 -2 2 1188 21 0 0 0 chr3 79135877 79135898 -80463885 + AT_rich Low_complexity Low_complexity 1 21 0 2 1188 1412 52 17 0 chr3 79136244 79136416 -80463367 - B2_Mm2 SINE B2 -19 176 2 2 1188 863 150 26 32 chr3 79136745 79136936 -80462847 - B3 SINE B2 -5 188 1 2 1188 366 226 12 23 chr3 79138091 79138177 -80461606 + BC1_Mm scRNA scRNA 10 94 -58 2 1188 213 235 14 14 chr3 79138221 79138290 -80461493 + CT-rich Low_complexity Low_complexity 2 70 0 2 1188 1468 304 83 28 chr3 79138308 79138945 -80460838 - Lx8 LINE L1 -5 7468 6797 2 1188 231 121 0 79 chr3 79139575 79139638 -80460145 + A-rich Low_complexity Low_complexity 4 61 0 2 1188 296 184 0 18 chr3 79139678 79139749 -80460034 + B1_Mur2 SINE Alu 42 107 -13 2 1188 204 67 0 0 chr3 79140507 79140537 -80459246 + (C)n Simple_repeat Simple_repeat 1 30 0 2 1188 4148 50 8 9 chr3 79141656 79142180 -80457603 + L1Md_F3 LINE L1 6062 6584 0 2 1188 224 164 32 32 chr3 79143351 79143394 -80456389 + (TTTG)n Simple_repeat Simple_repeat 3 44 0 2 1188 1152 58 0 0 chr3 79143394 79143533 -80456250 - B1_Mus2 SINE Alu -8 139 1 2 1188 224 164 32 32 chr3 79143533 79143552 -80456231 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 2 1188 195 247 77 13 chr3 79143843 79143921 -80455862 - MIRb SINE MIR 0 268 186 2 1188 355 298 24 16 chr3 79144097 79144223 -80455560 + ID_B1 SINE B4 87 213 -11 2 1188 222 293 0 0 chr3 79144256 79144314 -80455469 + ID4 SINE ID 12 69 -14 2 1188 408 254 13 66 chr3 79144953 79145105 -80454678 + CT-rich Low_complexity Low_complexity 5 148 0 2 1188 1166 245 39 106 chr3 79145149 79145555 -80454228 - MTE2a LTR MaLR 0 379 1 2 1188 1532 53 0 16 chr3 79146395 79146587 -80453196 + B2_Mm1t SINE B2 1 189 -4 2 1188 294 259 123 50 chr3 79147293 79147472 -80452311 + ORR1E LTR MaLR 79 270 -89 2 1188 204 264 38 0 chr3 79147690 79147743 -80452040 + L2c LINE L2 3103 3157 -230 2 1188 24 32 0 0 chr3 79147890 79147921 -80451862 + AT_rich Low_complexity Low_complexity 1 31 0 2 1188 239 324 0 0 chr3 79148161 79148229 -80451554 + ID4_ SINE ID 3 70 -13 2 1188 526 297 141 33 chr3 79148233 79148539 -80451244 + L1MC LINE L1 5377 5715 -2167 2 1188 663 78 0 0 chr3 79148941 79149031 -80450752 + (TC)n Simple_repeat Simple_repeat 2 91 0 2 1188 479 310 9 0 chr3 79149824 79149940 -80449843 - B1_Mur1 SINE Alu -31 118 2 2 1188 252 0 0 0 chr3 79149949 79149977 -80449806 + (TTTTA)n Simple_repeat Simple_repeat 1 28 0 2 1188 26 50 0 0 chr3 79150012 79150052 -80449731 + AT_rich Low_complexity Low_complexity 1 40 0 2 1188 195 42 0 0 chr3 79150057 79150081 -80449702 + (TG)n Simple_repeat Simple_repeat 1 24 0 2 1188 507 259 84 40 chr3 79150817 79151042 -80448741 - L1MC3 LINE L1 -119 7666 7432 2 1188 414 0 0 0 chr3 79151048 79151094 -80448689 + (TG)n Simple_repeat Simple_repeat 2 47 0 2 1188 612 285 208 25 chr3 79151239 79151714 -80448069 - L1MC3 LINE L1 -669 7116 6555 2 1188 262 238 0 16 chr3 79151730 79151794 -80447989 - PB1D10 SINE Alu -14 103 41 2 1188 3350 153 81 8 chr3 79151974 79152013 -80447770 - Lx5 LINE L1 0 7050 7008 2 1188 180 0 0 0 chr3 79152013 79152033 -80447750 + (TCTCC)n Simple_repeat Simple_repeat 2 21 0 2 1188 3350 153 81 8 chr3 79152033 79152599 -80447184 - Lx5 LINE L1 -43 7007 6403 2 1188 423 268 122 75 chr3 79152966 79153220 -80446563 - Lx8 LINE L1 -66 7407 7142 2 1188 256 271 50 40 chr3 79153219 79153319 -80446464 + Lx8 LINE L1 6867 6967 -506 2 1188 455 296 119 36 chr3 79153346 79153924 -80445859 - L1MC3 LINE L1 -1219 6566 5941 2 1188 437 314 102 25 chr3 79154085 79154399 -80445384 - L1MC3 LINE L1 -2043 5952 5615 2 1188 1725 175 65 6 chr3 79154409 79154765 -80445018 - MTD LTR MaLR -2 417 41 2 1188 372 315 128 16 chr3 79154818 79155076 -80444707 - L1MC3 LINE L1 -744 5600 5314 2 1188 348 24 0 0 chr3 79155097 79155138 -80444645 + (TG)n Simple_repeat Simple_repeat 1 41 0 2 1188 32446 104 13 3 chr3 79155165 79161259 -80438524 - L1_Mus1 LINE L1 0 6567 409 2 1188 294 296 18 36 chr3 79161265 79161377 -80438406 - L1MC3 LINE L1 -840 5306 5197 2 1188 279 98 0 0 chr3 79161424 79161465 -80438318 + B3A SINE B2 2 42 -156 2 1188 297 0 0 0 chr3 79162365 79162398 -80437385 + (TA)n Simple_repeat Simple_repeat 1 33 0 2 1188 1021 264 101 30 chr3 79163055 79163625 -80436158 + L1M2 LINE L1 4794 5413 -751 2 1188 659 232 0 0 chr3 79163674 79163799 -80435984 - RSINE1 SINE B4 -38 127 3 2 1188 270 223 148 69 chr3 79163854 79163955 -80435828 - B1F SINE Alu -23 126 18 2 1188 240 279 21 95 chr3 79164100 79164195 -80435588 + PB1 SINE Alu 22 109 -18 2 1188 255 261 0 0 chr3 79165110 79165175 -80434608 + ID4 SINE ID 3 67 -16 2 1188 180 158 0 0 chr3 79165181 79165219 -80434564 + GA-rich Low_complexity Low_complexity 3 40 0 2 1188 879 256 10 10 chr3 79165707 79165916 -80433867 - B3 SINE B2 -6 210 2 2 1188 1103 82 0 45 chr3 79165951 79166105 -80433678 + B1_Mus1 SINE Alu 1 147 -1 2 1188 322 69 17 17 chr3 79166113 79166172 -80433611 + (CAAAAA)n Simple_repeat Simple_repeat 4 62 0 2 1188 527 286 141 10 chr3 79166524 79166722 -80433061 - ID_B1 SINE B4 0 224 1 2 1188 354 269 35 9 chr3 79166784 79166900 -80432883 - PB1D9 SINE Alu 0 120 2 2 1189 471 289 47 0 chr3 79168026 79168154 -80431629 + RSINE1 SINE B4 20 153 -12 2 1189 585 0 0 0 chr3 79168305 79168370 -80431413 + (TG)n Simple_repeat Simple_repeat 1 65 0 2 1189 300 70 0 0 chr3 79168374 79168417 -80431366 + (CAGAGA)n Simple_repeat Simple_repeat 4 46 0 2 1189 830 257 23 28 chr3 79168445 79168661 -80431122 + B3 SINE B2 1 215 -1 2 1189 363 297 49 41 chr3 79168921 79169044 -80430739 - MLT2B1 LTR ERVL -31 536 413 3 1189 716 290 58 22 chr3 79169025 79169300 -80430483 - MLT2B1 LTR ERVL -235 285 1 3 1189 338 351 17 9 chr3 79169521 79169636 -80430147 - PB1 SINE Alu -11 116 1 3 1189 348 236 191 0 chr3 79169689 79169778 -80430005 - B1_Mus2 SINE Alu 0 147 42 3 1189 486 213 0 0 chr3 79169781 79169931 -80429852 + CT-rich Low_complexity Low_complexity 2 151 0 3 1189 277 150 31 77 chr3 79169936 79170001 -80429782 - ID_B1 SINE B4 -79 145 84 3 1189 338 94 0 70 chr3 79169945 79170002 -80429781 - PB1D9 SINE Alu -66 54 2 3 1189 757 126 8 30 chr3 79171210 79171341 -80428442 + B1_Mur1 SINE Alu 22 149 0 3 1189 342 0 0 0 chr3 79172048 79172086 -80427697 + (CA)n Simple_repeat Simple_repeat 2 39 0 3 1189 1158 14 0 0 chr3 79172195 79172336 -80427447 - L1Md_F2 LINE L1 0 6582 6442 3 1189 621 227 8 8 chr3 79172477 79172610 -80427173 + MT2A LTR ERVL 1 133 -400 3 1189 637 242 27 19 chr3 79172626 79172897 -80426886 + MT2A LTR ERVL 279 530 -54 3 1189 426 39 0 0 chr3 79173603 79173655 -80426128 + (CA)n Simple_repeat Simple_repeat 2 53 0 3 1189 734 308 113 14 chr3 79173678 79174464 -80425319 - L1MA4 LINE L1 -393 5907 5016 3 1189 365 226 0 56 chr3 79174577 79174685 -80425098 - ID_B1 SINE B4 0 224 123 3 1189 834 246 60 35 chr3 79175827 79176109 -80423674 - L1MB3 LINE L1 -74 6109 5821 3 1189 1061 225 40 68 chr3 79176171 79176467 -80423316 - B4A SINE B4 0 292 5 3 1189 583 302 82 55 chr3 79176516 79176895 -80422888 + MLT1B LTR MaLR 1 389 -1 3 1189 560 296 71 9 chr3 79176913 79177138 -80422645 - L1MB3 LINE L1 -407 5764 5526 3 1189 1285 243 84 38 chr3 79177178 79177546 -80422237 - Lx8 LINE L1 -100 7373 6989 3 1189 746 242 112 64 chr3 79177589 79177958 -80421825 + MTE2a LTR MaLR 26 404 -15 3 1189 1205 284 266 65 chr3 79177969 79178846 -80420937 + MTE2a-int LTR MaLR 11 1401 -179 3 1189 927 273 134 45 chr3 79178951 79179308 -80420475 + MTE2a LTR MaLR 31 419 0 3 1189 803 259 35 0 chr3 79179308 79179509 -80420274 - Lx8 LINE L1 -527 6946 6739 3 1189 1738 292 86 89 chr3 79179495 79179686 -80420097 - L1MA4 LINE L1 -2460 3420 3260 3 1189 2788 57 14 0 chr3 79179686 79180090 -80419693 - L1Md_F2 LINE L1 0 6582 6209 3 1189 1738 292 86 89 chr3 79180090 79180111 -80419672 - L1MA4 LINE L1 -2621 3259 3252 3 1189 2200 96 42 31 chr3 79180111 79180466 -80419317 - Lx LINE L1 -6 6648 6290 3 1189 1738 292 86 89 chr3 79180466 79181986 -80417797 - L1MA4 LINE L1 -2629 3251 1690 3 1189 271 286 0 13 chr3 79181999 79182077 -80417706 + BC1_Mm scRNA scRNA 2 78 -74 3 1189 577 303 104 28 chr3 79182544 79182974 -80416809 - L1_Rod LINE L1 -721 5576 5061 3 1189 389 224 106 2 chr3 79182989 79183153 -80416630 - L1_Rod LINE L1 -1120 5023 4811 3 1189 386 284 95 63 chr3 79183234 79183456 -80416327 - B4A SINE B4 -62 230 2 3 1189 181 358 32 0 chr3 79184093 79184188 -80415595 + L3 LINE CR1 3538 3635 -854 3 1189 369 0 0 0 chr3 79184473 79184514 -80415269 + (TG)n Simple_repeat Simple_repeat 1 41 0 3 1189 331 194 44 15 chr3 79184514 79184582 -80415201 - RSINE1 SINE B4 -35 130 61 3 1189 313 330 21 0 chr3 79184644 79184741 -80415042 + PB1D10 SINE Alu 3 101 -16 3 1189 318 296 17 9 chr3 79184845 79184961 -80414822 + GA-rich Low_complexity Low_complexity 1 117 0 3 1189 234 0 0 0 chr3 79185257 79185283 -80414500 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 3 1189 426 296 144 39 chr3 79186464 79187031 -80412752 - L1MA6 LINE L1 -1 6299 5674 3 1189 275 244 23 0 chr3 79187224 79187300 -80412483 - MER5A DNA MER1_type -107 82 1 3 1189 317 304 0 52 chr3 79187380 79187477 -80412306 + MER63A DNA AcHobo 14 105 -105 3 1189 240 287 21 31 chr3 79188054 79188151 -80411632 - MIRb SINE MIR -47 221 126 3 1189 390 21 0 0 chr3 79188440 79188487 -80411296 + (CA)n Simple_repeat Simple_repeat 2 48 0 3 1189 258 241 85 17 chr3 79188512 79188630 -80411153 - MamRep605 Unknown Unknown -562 314 189 3 1189 722 266 133 50 chr3 79188871 79189248 -80410535 - L1MA4 LINE L1 -195 5961 5563 3 1189 907 231 10 20 chr3 79189933 79190136 -80409647 - B3 SINE B2 -11 205 5 3 1189 252 262 134 7 chr3 79190145 79190287 -80409496 - Charlie5 DNA MER1_type -60 2564 2405 3 1189 260 300 12 0 chr3 79190538 79190618 -80409165 - ID4_ SINE ID 0 83 3 3 1189 309 294 0 142 chr3 79190628 79190755 -80409028 - PB1 SINE Alu -1 126 18 3 1189 531 0 0 0 chr3 79190766 79190825 -80408958 + (TAGA)n Simple_repeat Simple_repeat 3 61 0 3 1189 331 222 0 0 chr3 79190829 79190909 -80408874 + ID2 SINE ID 17 96 -56 3 1189 558 0 0 0 chr3 79191408 79191470 -80408313 + (TTTTG)n Simple_repeat Simple_repeat 3 64 0 3 1189 23 0 0 0 chr3 79192106 79192129 -80407654 + AT_rich Low_complexity Low_complexity 1 23 0 3 1189 192 111 0 0 chr3 79192153 79192189 -80407594 + (A)n Simple_repeat Simple_repeat 1 36 0 3 1189 340 264 43 52 chr3 79192260 79192354 -80407429 + PB1D10 SINE Alu 2 98 -19 3 1189 327 49 0 0 chr3 79192354 79192395 -80407388 + (TAAA)n Simple_repeat Simple_repeat 2 42 0 3 1189 340 264 43 52 chr3 79192395 79192416 -80407367 + PB1D10 SINE Alu 99 116 -1 3 1189 248 309 58 39 chr3 79192421 79192680 -80407103 + L1MD LINE L1 5010 5280 -866 3 1189 796 237 53 5 chr3 79193470 79193657 -80406126 + B3A SINE B2 3 198 0 3 1189 778 196 35 7 chr3 79193660 79193804 -80405979 + B1_Mur2 SINE Alu 2 149 0 3 1189 31 0 0 0 chr3 79193819 79193850 -80405933 + AT_rich Low_complexity Low_complexity 1 31 0 3 1189 3404 35 5 2 chr3 79193991 79194386 -80405397 + MTA_Mm LTR MaLR 1 396 0 3 1189 9040 49 4 1 chr3 79194386 79195481 -80404302 + MTA_Mm-int LTR MaLR 1 1098 0 3 1189 3411 35 5 0 chr3 79195481 79195875 -80403908 + MTA_Mm LTR MaLR 1 396 0 3 1189 686 302 94 73 chr3 79196168 79196635 -80403148 + Lx8 LINE L1 6972 7448 -25 3 1189 983 155 6 12 chr3 79196665 79196835 -80402948 - MTC LTR MaLR 0 421 253 3 1189 425 258 51 42 chr3 79197007 79197291 -80402492 + L1MDa LINE L1 1784 2057 -4561 3 1189 2796 140 25 95 chr3 79198005 79198574 -80401209 - RLTR24 LTR ERV1 0 529 1 3 1189 249 333 38 38 chr3 79198609 79198793 -80400990 - MLT1L LTR MaLR -310 300 117 3 1189 268 226 0 0 chr3 79199328 79199381 -80400402 - tRNA-Ala-GCY_ tRNA tRNA -20 55 3 3 1189 1163 304 81 23 chr3 79199477 79199609 -80400174 - Lx8 LINE L1 -6 7467 7325 3 1189 483 18 0 0 chr3 79199609 79199665 -80400118 + (TG)n Simple_repeat Simple_repeat 1 56 0 3 1189 468 0 0 0 chr3 79199665 79199716 -80400067 + (GA)n Simple_repeat Simple_repeat 1 52 0 3 1189 1163 304 81 23 chr3 79199716 79200114 -80399669 - Lx8 LINE L1 -149 7324 6906 3 1189 1081 157 30 5 chr3 79200233 79200431 -80399352 + MTC LTR MaLR 1 203 -218 3 1189 1360 35 11 0 chr3 79200535 79200709 -80399074 + (GGGAGA)n Simple_repeat Simple_repeat 5 180 0 3 1189 734 100 18 48 chr3 79200964 79201243 -80398540 + (TG)n Simple_repeat Simple_repeat 1 270 0 3 1189 366 23 0 0 chr3 79201243 79201285 -80398498 + (GA)n Simple_repeat Simple_repeat 1 43 0 3 1189 581 175 109 16 chr3 79202142 79202270 -80397513 + B1_Mur2 SINE Alu 1 140 -9 3 1189 405 310 26 0 chr3 79202576 79202692 -80397091 + PB1 SINE Alu 1 119 -8 3 1189 297 250 0 0 chr3 79202884 79202948 -80396835 + PB1D10 SINE Alu 33 96 -21 3 1189 803 94 0 25 chr3 79203175 79203295 -80396488 - B1_Mur3 SINE Alu -9 140 24 3 1189 927 41 0 0 chr3 79203314 79203436 -80396347 - B1_Mus1 SINE Alu 0 148 27 3 1189 503 179 108 45 chr3 79203480 79203591 -80396192 + PB1D9 SINE Alu 3 120 0 3 1189 365 20 41 0 chr3 79205055 79205104 -80394679 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 3 1189 838 235 59 20 chr3 79205127 79205331 -80394452 + B3 SINE B2 5 216 0 3 1189 454 247 172 6 chr3 79205635 79205785 -80393998 + B3A SINE B2 9 186 -12 3 1189 306 0 0 0 chr3 79205785 79205819 -80393964 + (CA)n Simple_repeat Simple_repeat 1 34 0 3 1189 454 247 172 6 chr3 79205819 79205831 -80393952 + B3A SINE B2 187 198 0 3 1189 290 147 0 14 chr3 79206373 79206442 -80393341 + (TG)n Simple_repeat Simple_repeat 2 69 0 3 1189 253 309 47 23 chr3 79206446 79206575 -80393208 - B1F SINE Alu -15 134 3 3 1189 638 271 21 16 chr3 79206575 79206656 -80393127 - ID SINE ID -142 82 1 3 1189 266 235 49 12 chr3 79206662 79206744 -80393039 + MER58A DNA MER1_type 58 142 -82 3 1189 180 0 0 0 chr3 79206864 79206884 -80392899 + (TC)n Simple_repeat Simple_repeat 1 20 0 3 1189 315 0 0 0 chr3 79206884 79206918 -80392865 + (CA)n Simple_repeat Simple_repeat 1 35 0 3 1189 193 298 58 58 chr3 79207098 79207219 -80392564 - MIR SINE MIR -125 137 17 3 1189 213 132 0 0 chr3 79207273 79207311 -80392472 + (CAAAC)n Simple_repeat Simple_repeat 2 39 0 3 1189 282 293 12 0 chr3 79207330 79207412 -80392371 - ID4 SINE ID 0 83 1 3 1189 21 0 0 0 chr3 79207414 79207435 -80392348 + AT_rich Low_complexity Low_complexity 1 21 0 3 1189 206 32 0 31 chr3 79207519 79207551 -80392232 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 3 1189 396 239 309 35 chr3 79208086 79208360 -80391423 - ORR1E LTR MaLR -4 375 27 3 1189 922 49 0 0 chr3 79208575 79208697 -80391086 - B1_Mm SINE Alu 0 147 26 3 1189 1253 82 49 11 chr3 79210061 79210224 -80389559 + B2_Mm2 SINE B2 2 162 -33 3 1189 180 0 0 0 chr3 79210224 79210244 -80389539 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 3 1189 1253 82 49 11 chr3 79210244 79210265 -80389518 + B2_Mm2 SINE B2 163 192 -3 3 1189 198 200 38 0 chr3 79210670 79210711 -80389072 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 1189 189 0 0 0 chr3 79210711 79210732 -80389051 + (TGG)n Simple_repeat Simple_repeat 3 23 0 3 1189 198 200 38 0 chr3 79210732 79210770 -80389013 + (TG)n Simple_repeat Simple_repeat 1 39 0 3 1189 259 198 40 28 chr3 79210807 79210984 -80388799 + (TG)n Simple_repeat Simple_repeat 2 180 0 3 1189 880 105 0 14 chr3 79211097 79211242 -80388541 + (TTC)n Simple_repeat Simple_repeat 3 145 0 3 1189 22 0 0 0 chr3 79211260 79211282 -80388501 + AT_rich Low_complexity Low_complexity 1 22 0 3 1189 464 204 43 11 chr3 79211530 79211624 -80388159 - PB1D10 SINE Alu 0 117 21 3 1189 213 140 53 0 chr3 79211631 79211688 -80388095 + GA-rich Low_complexity Low_complexity 2 61 0 3 1189 648 102 0 0 chr3 79212246 79212344 -80387439 + (TG)n Simple_repeat Simple_repeat 1 98 0 3 1189 222 37 0 0 chr3 79213632 79213659 -80386124 + (TAA)n Simple_repeat Simple_repeat 1 27 0 3 1189 238 259 0 0 chr3 79213803 79213857 -80385926 - ID SINE ID -147 77 24 4 1189 288 294 65 0 chr3 79213985 79214077 -80385706 + B3A SINE B2 62 159 -39 4 1189 364 111 14 14 chr3 79214077 79214150 -80385633 + (TC)n Simple_repeat Simple_repeat 2 74 0 4 1189 225 0 0 0 chr3 79214150 79214175 -80385608 + (CA)n Simple_repeat Simple_repeat 1 25 0 4 1189 357 230 195 16 chr3 79214710 79214838 -80384945 + L1MA6 LINE L1 5884 6034 -266 4 1189 435 19 0 0 chr3 79215904 79215956 -80383827 + (CA)n Simple_repeat Simple_repeat 1 52 0 4 1189 180 0 0 0 chr3 79216755 79216775 -80383008 + (CCA)n Simple_repeat Simple_repeat 2 21 0 4 1189 1607 36 0 20 chr3 79216834 79217030 -80382753 + B2_Mm1a SINE B2 2 193 0 4 1189 343 295 26 26 chr3 79217478 79217593 -80382190 + PB1D10 SINE Alu 3 117 0 4 1189 2837 225 69 30 chr3 79217625 79218378 -80381405 + RMER1C Other Other 505 1286 -56 4 1189 231 36 0 0 chr3 79218394 79218422 -80381361 + (GA)n Simple_repeat Simple_repeat 2 29 0 4 1189 871 128 8 0 chr3 79218429 79218562 -80381221 + B1_Mus2 SINE Alu 13 146 -1 4 1189 246 250 101 38 chr3 79218725 79218749 -80381034 - B4A SINE B4 -96 196 113 4 1189 327 146 0 0 chr3 79218749 79218804 -80380979 - B1_Mus2 SINE Alu -65 82 28 4 1189 261 234 0 0 chr3 79218804 79218868 -80380915 + (TA)n Simple_repeat Simple_repeat 2 65 0 4 1189 1612 298 47 19 chr3 79218884 79219421 -80380362 + Lx8 LINE L1 6222 6773 -700 4 1189 409 288 168 44 chr3 79219515 79219798 -80379985 - MLT1E3 LTR MaLR 0 680 284 4 1189 612 0 0 0 chr3 79219893 79219961 -80379822 + (TC)n Simple_repeat Simple_repeat 1 68 0 4 1189 369 273 90 8 chr3 79220073 79220195 -80379588 - B1F SINE Alu -16 133 2 4 1189 346 305 56 49 chr3 79220196 79220358 -80379425 - MLT1E3 LTR MaLR -461 163 1 4 1189 519 17 0 0 chr3 79220743 79220803 -80378980 + (TC)n Simple_repeat Simple_repeat 1 60 0 4 1189 375 228 13 0 chr3 79221729 79221808 -80377975 - ID2 SINE ID 0 83 4 4 1189 986 231 39 0 chr3 79224082 79224285 -80375498 + B3 SINE B2 1 211 -5 4 1189 209 211 18 0 chr3 79225069 79225126 -80374657 + CT-rich Low_complexity Low_complexity 1 58 0 4 1189 623 240 97 20 chr3 79225847 79226043 -80373740 - B3 SINE B2 -5 211 1 4 1189 363 253 74 0 chr3 79226195 79226290 -80373493 + ID_B1 SINE B4 116 217 -7 4 1189 199 322 11 32 chr3 79227217 79227310 -80372473 - MER5B DNA MER1_type -85 93 3 4 1189 325 258 21 21 chr3 79228422 79228517 -80371266 - MTE2a LTR MaLR -14 365 271 4 1189 513 190 21 131 chr3 79228703 79228848 -80370935 + B4 SINE B4 42 170 -122 4 1189 789 84 0 63 chr3 79228855 79229045 -80370738 + (TC)n Simple_repeat Simple_repeat 2 179 0 4 1189 600 168 0 0 chr3 79229046 79229219 -80370564 + CT-rich Low_complexity Low_complexity 2 174 0 4 1189 806 100 0 43 chr3 79229220 79229408 -80370375 + (TC)n Simple_repeat Simple_repeat 1 180 0 4 1189 216 0 0 0 chr3 79229692 79229716 -80370067 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 4 1189 201 324 0 14 chr3 79230211 79230280 -80369503 - L2c LINE L2 -22 3365 3298 4 1189 221 333 69 0 chr3 79230594 79230696 -80369087 + MIRb SINE MIR 74 182 -86 4 1189 1254 101 31 41 chr3 79230909 79231105 -80368678 + B2_Mm2 SINE B2 2 195 0 4 1189 2963 246 65 20 chr3 79231146 79231929 -80367854 + Lx8 LINE L1 6315 7132 -341 4 1189 229 245 40 50 chr3 79231971 79232070 -80367713 + Lx8 LINE L1 7372 7469 -4 4 1189 3159 269 50 32 chr3 79233399 79235043 -80364740 - RMER1C Other Other 0 1342 165 4 1189 1860 278 95 32 chr3 79235211 79235862 -80363921 - Lx8 LINE L1 0 7473 6782 4 1189 360 0 0 0 chr3 79235912 79235952 -80363831 + (CA)n Simple_repeat Simple_repeat 2 41 0 4 1189 529 287 19 13 chr3 79236225 79236384 -80363399 + RSINE1 SINE B4 2 161 -4 4 1189 827 271 67 74 chr3 79237173 79237563 -80362220 - MTD LTR MaLR -31 388 2 4 1189 404 236 11 0 chr3 79237652 79237741 -80362042 + B3A SINE B2 72 161 -37 4 1189 243 0 0 0 chr3 79237772 79237799 -80361984 + (CA)n Simple_repeat Simple_repeat 2 28 0 4 1189 252 0 0 0 chr3 79238335 79238363 -80361420 + (CA)n Simple_repeat Simple_repeat 2 29 0 4 1189 1708 146 41 101 chr3 79238716 79239104 -80360679 - ORR1B2 LTR MaLR -2 365 1 4 1189 573 254 8 129 chr3 79241005 79241066 -80358717 + L1MC5 LINE L1 6629 6689 -1272 4 1189 2400 96 16 0 chr3 79241066 79241388 -80358395 - ORR1A2 LTR MaLR 0 327 1 4 1189 573 254 8 129 chr3 79241388 79241406 -80358377 + L1MC5 LINE L1 6690 6700 -1261 4 1189 257 306 107 43 chr3 79241406 79241546 -80358237 - B1F SINE Alu 0 149 1 4 1189 573 254 8 129 chr3 79241546 79241705 -80358078 + L1MC5 LINE L1 6701 6839 -1122 4 1189 375 311 8 32 chr3 79241712 79241838 -80357945 + RSINE1 SINE B4 3 125 -40 4 1189 237 65 0 0 chr3 79241881 79241912 -80357871 + (CAAAG)n Simple_repeat Simple_repeat 4 34 0 4 1189 1290 109 15 25 chr3 79241965 79242162 -80357621 + B2_Mm2 SINE B2 1 195 0 4 1189 254 270 0 0 chr3 79242173 79242236 -80357547 + tRNA-Ala-GCY_ tRNA tRNA 6 68 -7 4 1189 293 220 0 0 chr3 79242601 79242660 -80357123 - tRNA-Ala-GCY_ tRNA tRNA -7 68 10 4 1189 257 288 14 0 chr3 79242660 79242674 -80357109 - ID4 SINE ID -9 74 1 4 1189 180 0 0 0 chr3 79242796 79242816 -80356967 + (ATTG)n Simple_repeat Simple_repeat 2 21 0 4 1189 1068 77 13 13 chr3 79242816 79242974 -80356809 - B2_Mm2 SINE B2 -37 158 1 4 1189 477 239 26 66 chr3 79243025 79243177 -80356606 - B4 SINE B4 -144 148 3 4 1189 273 335 2 0 chr3 79243203 79243295 -80356488 + ID4 SINE ID 2 94 -58 4 1189 292 204 19 0 chr3 79243383 79243437 -80356346 + MLT1C LTR MaLR 407 461 -6 4 1189 1291 115 11 5 chr3 79243695 79243879 -80355904 + B2_Mm2 SINE B2 2 186 -9 4 1189 525 220 78 140 chr3 79246024 79246267 -80353516 + B4A SINE B4 3 230 -62 4 1189 1254 161 32 5 chr3 79246448 79246666 -80353117 + URR1A DNA MER1_type 2 225 -1 4 1189 245 286 12 83 chr3 79246945 79247029 -80352754 + B4 SINE B4 215 292 0 4 1189 805 228 27 16 chr3 79247676 79247863 -80351920 + B3 SINE B2 2 190 -26 4 1189 384 206 294 51 chr3 79247889 79248087 -80351696 + B3A SINE B2 1 216 0 4 1189 477 105 0 0 chr3 79250027 79250113 -80349670 + (CA)n Simple_repeat Simple_repeat 2 87 0 4 1189 908 180 114 5 chr3 79250113 79250297 -80349486 + B3 SINE B2 4 207 -9 4 1189 612 290 6 6 chr3 79250407 79250563 -80349220 + RSINE1 SINE B4 2 157 -8 4 1189 2395 48 0 0 chr3 79250838 79251131 -80348652 + L1Md_F2 LINE L1 6290 6582 0 4 1189 658 301 123 59 chr3 79251270 79251848 -80347935 + L1M4 LINE L1 293 907 -5635 4 1189 1365 89 17 0 chr3 79251866 79252046 -80347737 - B2_Mm2 SINE B2 -11 184 2 4 1189 1194 238 108 50 chr3 79252277 79252701 -80347082 + Lx8 LINE L1 6277 6725 -748 4 1189 4776 54 7 3 chr3 79253699 79254291 -80345492 + L1Md_F2 LINE L1 5987 6580 -2 4 1189 348 349 43 65 chr3 79255080 79255356 -80344427 - L1MC4 LINE L1 0 8042 7773 4 1189 630 252 7 0 chr3 79255925 79256060 -80343723 - ID_B1 SINE B4 -1 223 88 4 1189 324 0 0 0 chr3 79256249 79256285 -80343498 + (CA)n Simple_repeat Simple_repeat 1 36 0 4 1189 27 0 0 0 chr3 79256630 79256657 -80343126 + AT_rich Low_complexity Low_complexity 1 27 0 4 1189 295 292 61 15 chr3 79256707 79256839 -80342944 - MER5A1 DNA MER1_type -7 159 22 4 1189 210 71 0 0 chr3 79257113 79257141 -80342642 + (TC)n Simple_repeat Simple_repeat 2 29 0 4 1189 1269 34 0 0 chr3 79257141 79257287 -80342496 - B1_Mm SINE Alu 0 147 2 4 1189 344 192 17 119 chr3 79257325 79257443 -80342340 + PB1D10 SINE Alu 12 117 0 4 1189 456 67 0 0 chr3 79257498 79257558 -80342225 + (TG)n Simple_repeat Simple_repeat 2 61 0 4 1189 2143 101 6 0 chr3 79258035 79258352 -80341431 - ORR1A2 LTR MaLR -8 319 1 4 1189 482 273 0 16 chr3 79258352 79258475 -80341308 + B1F2 SINE Alu 12 132 -17 4 1189 649 265 156 36 chr3 79258631 79258933 -80340850 - MLT2D LTR ERVL -57 357 20 4 1189 445 168 29 29 chr3 79259459 79259563 -80340220 - RSINE1 SINE B4 -60 105 2 4 1189 282 323 112 81 chr3 79259605 79259952 -80339831 - MER20B DNA MER1_type -237 546 189 4 1189 1194 55 0 0 chr3 79260312 79260457 -80339326 + B1_Mus2 SINE Alu 3 147 0 4 1189 204 67 0 0 chr3 79260459 79260489 -80339294 + (CAAAAA)n Simple_repeat Simple_repeat 2 31 0 4 1189 450 282 37 30 chr3 79263776 79263911 -80335872 + RSINE1 SINE B4 1 136 -29 4 1189 1721 150 119 31 chr3 79264667 79265019 -80334764 + ORR1C2 LTR MaLR 2 384 0 4 1189 737 230 93 10 chr3 79265091 79265284 -80334499 + B3 SINE B2 2 210 -6 4 1189 461 302 0 17 chr3 79265320 79265438 -80334345 + PB1D10 SINE Alu 1 116 -1 4 1189 202 255 70 70 chr3 79268141 79268255 -80331528 - MIR SINE MIR -41 221 108 4 1189 366 281 166 0 chr3 79269827 79269966 -80329817 + RSINE1 SINE B4 3 164 -1 4 1189 348 204 0 54 chr3 79270285 79270378 -80329405 + B4 SINE B4 158 245 -47 4 1189 370 250 42 0 chr3 79270370 79270466 -80329317 + B3A SINE B2 28 127 -71 4 1189 249 83 0 0 chr3 79270494 79270530 -80329253 + (CA)n Simple_repeat Simple_repeat 2 37 0 4 1189 248 239 0 69 chr3 79270561 79270633 -80329150 + B4A SINE B4 223 289 -3 4 1189 1217 248 66 5 chr3 79270895 79271230 -80328553 + MTE2a LTR MaLR 1 379 0 4 1189 486 279 68 42 chr3 79271992 79272191 -80327592 - L1ME1 LINE L1 -15 6164 5953 4 1189 3148 134 135 20 chr3 79272191 79272739 -80327044 + RMER19C LTR ERVK 1 611 0 4 1189 486 279 68 42 chr3 79272739 79272775 -80327008 - L1ME1 LINE L1 -227 5952 5923 4 1189 611 283 72 6 chr3 79272888 79273055 -80326728 + B3 SINE B2 39 216 0 5 1189 529 93 47 0 chr3 79273057 79273164 -80326619 + (GA)n Simple_repeat Simple_repeat 1 112 0 5 1189 867 163 19 91 chr3 79273199 79273408 -80326375 + B2_Mm2 SINE B2 2 195 0 5 1189 474 227 243 20 chr3 79273409 79273656 -80326127 - L1ME1 LINE L1 -468 5711 5410 4 1189 346 250 39 77 chr3 79274183 79274313 -80325470 - B1F1 SINE Alu -24 125 1 5 1189 253 259 85 17 chr3 79275383 79275501 -80324282 - B1F SINE Alu -1 148 23 5 1189 510 272 0 0 chr3 79275814 79275917 -80323866 - ID_B1 SINE B4 -10 214 112 5 1189 899 95 82 0 chr3 79276679 79276826 -80322957 + B2_Mm1a SINE B2 2 160 -33 5 1189 216 0 0 0 chr3 79276826 79276850 -80322933 + (CAAT)n Simple_repeat Simple_repeat 2 25 0 5 1189 279 294 12 0 chr3 79276891 79276976 -80322807 + PB1D10 SINE Alu 14 99 -18 5 1189 1945 157 54 23 chr3 79277536 79277889 -80321894 + RMER1B Other Other 691 1054 -12 5 1189 309 265 132 25 chr3 79277918 79278077 -80321706 + B3 SINE B2 41 216 0 5 1189 460 250 28 0 chr3 79278630 79278738 -80321045 + PB1D10 SINE Alu 5 115 -2 5 1189 210 318 0 43 chr3 79279455 79279524 -80320259 - MIR SINE MIR -3 259 194 5 1189 1057 238 43 8 chr3 79279663 79279921 -80319862 - B4 SINE B4 -23 269 3 5 1189 1290 83 39 0 chr3 79280699 79280879 -80318904 - B2_Mm2 SINE B2 -7 188 2 5 1189 230 273 114 0 chr3 79281217 79281305 -80318478 + PB1D9 SINE Alu 10 107 -13 5 1189 225 0 0 0 chr3 79281305 79281330 -80318453 + (CAAA)n Simple_repeat Simple_repeat 1 25 0 5 1189 240 199 116 143 chr3 79283002 79283149 -80316634 + LTR33 LTR ERVL 32 174 -341 5 1189 432 231 161 90 chr3 79286188 79286384 -80313399 + B3A SINE B2 6 216 0 5 1189 300 283 91 0 chr3 79286757 79286856 -80312927 + Lx7 LINE L1 6061 6168 -1528 5 1189 213 65 0 0 chr3 79286856 79286887 -80312896 + (CA)n Simple_repeat Simple_repeat 2 32 0 5 1189 3173 276 97 41 chr3 79286960 79288189 -80311594 + Lx8 LINE L1 6172 7469 -4 5 1189 369 287 92 59 chr3 79288888 79288906 -80310877 + ID_B1 SINE B4 68 221 0 5 1189 449 260 92 30 chr3 79288906 79289037 -80310746 + B1F SINE Alu 10 148 -1 5 1189 27 29 0 0 chr3 79289103 79289137 -80310646 + AT_rich Low_complexity Low_complexity 1 34 0 5 1189 295 320 106 8 chr3 79289388 79289511 -80310272 + B4 SINE B4 2 136 -156 5 1189 180 0 0 0 chr3 79289580 79289600 -80310183 + (CA)n Simple_repeat Simple_repeat 2 21 0 5 1189 295 339 70 28 chr3 79289945 79290326 -80309457 + L1M4c LINE L1 1371 1757 -4889 5 1189 461 254 45 0 chr3 79291351 79291461 -80308322 - PB1D10 SINE Alu 0 117 3 5 1189 500 275 52 119 chr3 79292431 79292625 -80307158 + MER20 DNA MER1_type 39 219 0 5 1189 550 305 46 7 chr3 79293438 79293590 -80306193 + MER58A DNA MER1_type 1 158 -66 5 1189 522 152 0 0 chr3 79293705 79293830 -80305953 + (CA)n Simple_repeat Simple_repeat 1 125 0 5 1189 302 133 0 0 chr3 79293845 79293890 -80305893 + HAL1-3A_ME LINE L1 1977 2021 -837 5 1189 324 296 0 0 chr3 79294013 79294094 -80305689 - ID4 SINE ID -2 81 1 5 1189 303 222 65 39 chr3 79294136 79294253 -80305530 + PB1D9 SINE Alu 17 130 -20 5 1189 589 323 130 24 chr3 79294715 79295136 -80304647 + Lx9 LINE L1 6886 7481 -163 5 1189 854 179 0 0 chr3 79295333 79295473 -80304310 + B1_Mur2 SINE Alu 1 140 -9 5 1189 213 39 0 0 chr3 79295473 79295499 -80304284 + (CCAA)n Simple_repeat Simple_repeat 2 27 0 5 1189 837 164 14 14 chr3 79296369 79296517 -80303266 + B1_Mur1 SINE Alu 2 149 0 5 1189 316 299 75 100 chr3 79297713 79298014 -80301769 + B4 SINE B4 4 264 -28 5 1190 353 256 38 87 chr3 79298995 79299122 -80300661 + PB1 SINE Alu 1 135 -12 5 1190 210 37 0 0 chr3 79299807 79299834 -80299949 + (CA)n Simple_repeat Simple_repeat 1 27 0 5 1190 540 252 89 8 chr3 79300461 79300585 -80299198 - B1_Mur2 SINE Alu -6 143 10 5 1190 796 217 86 12 chr3 79301124 79301367 -80298416 + MER45R DNA Tip100 1319 1579 -2 5 1190 656 129 33 9 chr3 79301726 79301836 -80297947 + B1_Mur2 SINE Alu 27 137 -12 5 1190 462 312 25 19 chr3 79301861 79302021 -80297762 - RSINE1 SINE B4 -2 163 3 5 1190 399 210 77 39 chr3 79302044 79302148 -80297635 - PB1D10 SINE Alu 0 117 10 5 1190 1243 66 10 0 chr3 79302979 79303175 -80296608 - MusHAL1 LINE L1 0 2712 2515 5 1190 1119 111 46 11 chr3 79303185 79303359 -80296424 + B2_Mm2 SINE B2 2 181 -14 5 1190 371 82 65 11 chr3 79303425 79303532 -80296251 + B2_Mm2 SINE B2 47 195 0 5 1190 2118 104 28 0 chr3 79303532 79303849 -80295934 - MusHAL1 LINE L1 -195 2517 2192 5 1190 292 279 135 2 chr3 79303979 79304088 -80295695 + B1F SINE Alu 1 124 -25 5 1190 522 294 97 7 chr3 79304511 79304655 -80295128 + B4A SINE B4 68 224 -68 5 1190 23 0 0 0 chr3 79304741 79304764 -80295019 + AT_rich Low_complexity Low_complexity 1 23 0 5 1190 352 250 44 33 chr3 79304778 79304869 -80294914 + B1F2 SINE Alu 32 123 -26 5 1190 1061 219 84 72 chr3 79304958 79305427 -80294356 + RMER4B LTR ERVK 17 466 0 5 1190 833 168 35 0 chr3 79305892 79306035 -80293748 - B1_Mur2 SINE Alu 0 149 2 5 1190 37 39 0 0 chr3 79306060 79306111 -80293672 + AT_rich Low_complexity Low_complexity 1 51 0 5 1190 238 281 122 0 chr3 79306166 79306248 -80293535 + PB1 SINE Alu 1 92 -35 5 1190 231 283 0 0 chr3 79306256 79306309 -80293474 + ID4 SINE ID 1 53 -30 5 1190 648 136 91 0 chr3 79306532 79306642 -80293141 + B1_Mur3 SINE Alu 30 149 0 5 1190 1111 95 0 20 chr3 79307110 79307260 -80292523 + B1_Mus2 SINE Alu 1 147 0 5 1190 435 261 55 88 chr3 79307686 79307867 -80291916 - B4A SINE B4 -117 175 1 5 1190 305 226 82 41 chr3 79307935 79308032 -80291751 + B1F1 SINE Alu 41 141 -8 5 1190 533 259 221 25 chr3 79308264 79308747 -80291036 + L1MC3 LINE L1 6909 7486 -299 5 1190 593 146 21 0 chr3 79308771 79308867 -80290916 + B1_Mur2 SINE Alu 46 143 -6 5 1190 1225 54 0 0 chr3 79308876 79309024 -80290759 + B1_Mus1 SINE Alu 1 148 0 5 1190 21 0 0 0 chr3 79309024 79309045 -80290738 + AT_rich Low_complexity Low_complexity 1 21 0 5 1190 273 54 92 26 chr3 79309050 79309126 -80290657 + A-rich Low_complexity Low_complexity 2 82 0 5 1190 216 0 0 0 chr3 79309181 79309205 -80290578 + (G)n Simple_repeat Simple_repeat 1 24 0 5 1190 714 34 0 0 chr3 79311267 79311356 -80288427 + (GA)n Simple_repeat Simple_repeat 1 89 0 5 1190 1176 86 86 0 chr3 79312242 79312417 -80287366 + B2_Mm2 SINE B2 3 192 -3 5 1190 207 100 0 0 chr3 79312426 79312456 -80287327 + (CAA)n Simple_repeat Simple_repeat 1 30 0 5 1190 288 77 0 0 chr3 79312979 79313018 -80286765 + (GAAA)n Simple_repeat Simple_repeat 3 41 0 5 1190 1263 79 0 0 chr3 79313018 79313195 -80286588 + (GGAA)n Simple_repeat Simple_repeat 4 180 0 5 1190 395 264 11 0 chr3 79313205 79313292 -80286491 + PB1D10 SINE Alu 1 88 -29 5 1190 819 233 37 0 chr3 79313357 79313575 -80286208 + Lx6 LINE L1 6262 6417 -633 5 1190 227 255 40 60 chr3 79313556 79313656 -80286127 + Lx5 LINE L1 6576 6673 -377 5 1190 1199 268 64 19 chr3 79313642 79314003 -80285780 + Lx6 LINE L1 7084 7460 0 5 1190 21 0 0 0 chr3 79314202 79314223 -80285560 + AT_rich Low_complexity Low_complexity 1 21 0 5 1190 215 250 0 0 chr3 79314269 79314321 -80285462 + PB1D10 SINE Alu 37 88 -29 5 1190 297 236 41 14 chr3 79314310 79314383 -80285400 + B1F1 SINE Alu 53 127 -22 5 1190 451 185 0 12 chr3 79314351 79314433 -80285350 + B1F SINE Alu 67 147 -2 5 1190 873 168 7 0 chr3 79314438 79314581 -80285202 + B1_Mur4 SINE Alu 1 144 -6 5 1190 268 300 48 91 chr3 79314713 79314922 -80284861 - RMER10A LTR ERVL -24 418 219 5 1190 513 0 0 0 chr3 79314950 79315007 -80284776 + (GA)n Simple_repeat Simple_repeat 2 58 0 5 1190 358 302 0 0 chr3 79315451 79315537 -80284246 + PB1D10 SINE Alu 1 86 -31 5 1190 806 239 42 52 chr3 79315694 79315906 -80283877 + ID_B1 SINE B4 8 217 -7 5 1190 218 204 82 0 chr3 79315864 79315913 -80283870 + PB1 SINE Alu 75 127 0 5 1190 878 90 257 0 chr3 79315948 79316092 -80283691 - B2_Mm2 SINE B2 -14 181 1 5 1190 1082 227 153 34 chr3 79316852 79317172 -80282611 + ORR1D2 LTR MaLR 1 358 -12 5 1190 974 72 63 28 chr3 79317630 79317773 -80282010 - B1_Mur4 SINE Alu -2 148 1 5 1190 1017 148 6 33 chr3 79317870 79318051 -80281732 - URR1A DNA MER1_type 0 226 51 5 1190 315 0 0 0 chr3 79318253 79318288 -80281495 + (CA)n Simple_repeat Simple_repeat 1 35 0 5 1190 482 250 93 0 chr3 79318689 79318797 -80280986 + B1F1 SINE Alu 1 118 -31 5 1190 254 255 178 79 chr3 79318817 79318941 -80280842 + PB1D10 SINE Alu 1 120 0 5 1190 309 51 0 0 chr3 79319084 79319123 -80280660 + (CTG)n Simple_repeat Simple_repeat 2 40 0 5 1190 209 242 118 29 chr3 79319127 79319195 -80280588 - L2 LINE L2 -590 2829 2756 5 1190 189 121 0 0 chr3 79319930 79319963 -80279820 + (TTTTC)n Simple_repeat Simple_repeat 2 34 0 5 1190 282 73 0 0 chr3 79319971 79320012 -80279771 + (TCTG)n Simple_repeat Simple_repeat 2 42 0 5 1190 518 218 92 0 chr3 79320927 79321069 -80278714 + RSINE1 SINE B4 3 157 -8 5 1190 445 233 19 37 chr3 79321551 79321658 -80278125 - PB1D10 SINE Alu -1 116 12 5 1190 212 246 63 32 chr3 79321611 79321674 -80278109 - B4A SINE B4 -148 144 80 6 1190 262 322 146 7 chr3 79322667 79322811 -80276972 - L2b LINE L2 -4 3422 3248 6 1190 301 270 100 0 chr3 79322866 79322966 -80276817 + PB1D10 SINE Alu 1 110 -7 6 1190 200 306 82 14 chr3 79323579 79323652 -80276131 + MIRb SINE MIR 165 242 -26 6 1190 645 112 8 50 chr3 79324260 79324379 -80275404 + B1_Mur4 SINE Alu 28 150 0 6 1190 1159 112 28 6 chr3 79324436 79324615 -80275168 + B2_Mm2 SINE B2 1 183 -12 6 1190 236 300 37 12 chr3 79324662 79324743 -80275040 + ID4_ SINE ID 1 83 0 6 1190 247 274 0 136 chr3 79324787 79324905 -80274878 + MT2B LTR ERVL 156 257 -344 6 1190 545 220 75 45 chr3 79324803 79324936 -80274847 + B1_Mur1 SINE Alu 6 142 -7 6 1190 222 208 0 0 chr3 79324936 79324989 -80274794 + GA-rich Low_complexity Low_complexity 1 53 0 6 1190 35 24 0 0 chr3 79325184 79325226 -80274557 + AT_rich Low_complexity Low_complexity 1 42 0 6 1190 481 284 65 29 chr3 79325236 79325374 -80274409 + B1F SINE Alu 6 148 -1 6 1190 378 0 0 0 chr3 79325392 79325434 -80274349 + (TG)n Simple_repeat Simple_repeat 2 43 0 6 1190 451 220 0 11 chr3 79325731 79325823 -80273960 + RSINE1 SINE B4 75 165 0 6 1190 418 163 91 23 chr3 79326032 79326120 -80273663 + PB1D10 SINE Alu 24 117 0 6 1190 1002 68 0 192 chr3 79326147 79326231 -80273552 + B1_Mus1 SINE Alu 1 64 -84 6 1190 1227 40 0 20 chr3 79326231 79326382 -80273401 - B1_Mus1 SINE Alu 0 148 1 6 1190 1002 68 0 192 chr3 79326382 79326479 -80273304 + B1_Mus1 SINE Alu 65 147 -1 6 1190 313 28 0 0 chr3 79326489 79326525 -80273258 + HAL1-3A_ME LINE L1 1974 2009 -849 6 1190 459 92 0 0 chr3 79326525 79326590 -80273193 + (TA)n Simple_repeat Simple_repeat 1 65 0 6 1190 231 305 76 8 chr3 79326689 79326808 -80272975 + MLT1C LTR MaLR 71 197 -270 6 1190 710 148 220 16 chr3 79327088 79327274 -80272509 + URR1B DNA MER1_type 1 224 -1 6 1190 402 220 44 0 chr3 79327648 79327739 -80272044 + PB1D7 SINE Alu 17 111 -9 6 1190 22 0 0 0 chr3 79328007 79328029 -80271754 + GC_rich Low_complexity Low_complexity 1 22 0 6 1190 753 268 0 12 chr3 79328281 79328451 -80271332 - B3A SINE B2 -30 168 1 6 1190 561 262 72 64 chr3 79328605 79328841 -80270942 - MER46C DNA MER2_type 0 338 101 6 1190 676 232 137 24 chr3 79329631 79329799 -80269984 - B3A SINE B2 -6 192 6 6 1190 494 257 56 21 chr3 79330134 79330267 -80269516 + B1F1 SINE Alu 1 139 -10 6 1190 201 94 0 0 chr3 79330267 79330299 -80269484 + (CAA)n Simple_repeat Simple_repeat 2 33 0 6 1190 691 208 126 50 chr3 79330357 79330555 -80269228 + B3 SINE B2 3 215 -1 6 1190 238 274 175 9 chr3 79330579 79330693 -80269090 + L1MC3 LINE L1 5296 5428 -1016 6 1190 358 240 43 9 chr3 79330708 79330802 -80268981 + B1F2 SINE Alu 45 149 0 6 1190 679 269 184 37 chr3 79330811 79331250 -80268533 + L1MC3 LINE L1 5412 5943 -1842 6 1190 621 289 19 26 chr3 79333420 79333437 -80266346 - RSINE1 SINE B4 -8 157 142 6 1190 189 0 0 0 chr3 79333437 79333458 -80266325 + (CA)n Simple_repeat Simple_repeat 1 21 0 6 1190 621 289 19 26 chr3 79333458 79333596 -80266187 - RSINE1 SINE B4 -24 141 3 6 1190 1154 171 28 9 chr3 79334712 79334924 -80264859 + B3 SINE B2 1 216 0 6 1190 288 0 0 0 chr3 79336766 79336798 -80262985 + (A)n Simple_repeat Simple_repeat 1 32 0 6 1190 194 0 39 0 chr3 79336991 79337017 -80262766 + (CAAAAA)n Simple_repeat Simple_repeat 2 28 0 6 1190 345 244 53 92 chr3 79337206 79337337 -80262446 + MT2B LTR ERVL 153 278 -323 6 1190 764 149 29 29 chr3 79337225 79337363 -80262420 + B1_Mur3 SINE Alu 11 148 -1 6 1190 330 292 62 0 chr3 79337457 79337553 -80262230 + ID_B1 SINE B4 32 133 -91 6 1190 22 56 0 0 chr3 79337587 79337623 -80262160 + AT_rich Low_complexity Low_complexity 1 36 0 6 1190 306 242 0 16 chr3 79337708 79337771 -80262012 - ID4_ SINE ID -18 65 4 6 1190 1142 29 0 0 chr3 79338899 79339038 -80260745 - B1_Mus2 SINE Alu 0 147 9 6 1190 233 270 15 60 chr3 79340160 79340221 -80259562 + B1F SINE Alu 3 60 -89 6 1190 655 278 19 0 chr3 79340221 79340383 -80259400 + B4A SINE B4 3 167 -125 6 1190 384 177 0 122 chr3 79340442 79340532 -80259251 + ID_B1 SINE B4 146 224 0 6 1190 416 204 39 128 chr3 79340528 79340545 -80259238 + B4A SINE B4 68 86 -206 6 1190 334 191 0 42 chr3 79340545 79340616 -80259167 + PB1D10 SINE Alu 13 80 -37 6 1190 1055 31 8 0 chr3 79340608 79340738 -80259045 + B1_Mus2 SINE Alu 17 147 0 6 1190 416 204 39 128 chr3 79340616 79340736 -80259047 + B4A SINE B4 87 224 -68 6 1190 311 238 119 0 chr3 79340740 79340824 -80258959 + ID_B1 SINE B4 130 223 -1 6 1190 202 149 20 78 chr3 79341158 79341209 -80258574 - MIRb SINE MIR -1 267 220 6 1190 323 248 172 8 chr3 79341300 79341422 -80258361 + B1F1 SINE Alu 1 142 -7 6 1190 277 305 35 14 chr3 79341503 79341646 -80258137 + GA-rich Low_complexity Low_complexity 4 149 0 6 1190 446 250 173 8 chr3 79342121 79342254 -80257529 - RSINE1 SINE B4 -2 163 9 6 1190 1381 61 44 0 chr3 79342545 79342725 -80257058 + B2_Mm2 SINE B2 2 189 -6 6 1190 806 229 126 0 chr3 79342899 79343082 -80256701 + B3 SINE B2 3 208 -8 6 1190 491 275 0 16 chr3 79343394 79343516 -80256267 - ID_B1 SINE B4 -16 208 89 6 1190 361 257 152 42 chr3 79344036 79344154 -80255629 - ID_B1 SINE B4 0 224 94 6 1190 3260 29 42 0 chr3 79344193 79344573 -80255210 + MTA_Mm LTR MaLR 1 396 0 6 1190 7573 64 50 72 chr3 79344573 79345696 -80254087 + MTA_Mm-int LTR MaLR 1 1098 0 6 1190 3443 28 5 0 chr3 79345698 79346090 -80253693 + MTA_Mm LTR MaLR 3 396 0 6 1190 1167 61 0 7 chr3 79346276 79346424 -80253359 + B1_Mus1 SINE Alu 1 147 -1 6 1190 191 36 0 35 chr3 79346424 79346453 -80253330 + (TTAAA)n Simple_repeat Simple_repeat 3 30 0 6 1190 265 219 151 0 chr3 79347805 79347878 -80251905 - B1F SINE Alu -60 89 6 6 1190 1294 27 0 0 chr3 79348520 79348667 -80251116 + B1_Mus2 SINE Alu 1 147 0 6 1190 234 0 0 0 chr3 79348667 79348693 -80251090 + (A)n Simple_repeat Simple_repeat 1 26 0 6 1190 466 247 21 0 chr3 79349045 79349138 -80250645 + RSINE1 SINE B4 45 139 -26 6 1190 229 323 53 21 chr3 79349343 79349357 -80250426 + ID SINE ID 70 86 -138 6 1190 252 265 143 29 chr3 79349357 79349462 -80250321 + PB1D10 SINE Alu 1 117 0 6 1190 225 350 62 0 chr3 79349940 79350020 -80249763 + MER21B LTR ERV1 273 357 -506 6 1190 711 276 129 54 chr3 79350055 79350334 -80249449 + MER21B LTR ERV1 501 800 -63 6 1190 309 160 0 0 chr3 79350530 79350580 -80249203 + HAL1-3A_ME LINE L1 1969 2018 -840 6 1190 663 149 5 0 chr3 79350580 79350803 -80248980 + (CA)n Simple_repeat Simple_repeat 1 224 0 6 1190 3409 28 15 3 chr3 79350895 79351286 -80248497 - MTA_Mm LTR MaLR 0 396 1 6 1190 7854 72 33 7 chr3 79351290 79352360 -80247423 - MTA_Mm-int LTR MaLR 0 1098 1 6 1190 1072 222 97 46 chr3 79352367 79352723 -80247060 - MTA_Mm LTR MaLR -17 383 7 6 1190 183 129 0 0 chr3 79353135 79353166 -80246617 + (CAGGG)n Simple_repeat Simple_repeat 2 32 0 6 1190 295 322 79 39 chr3 79353273 79353451 -80246332 + ORR1E LTR MaLR 175 359 0 6 1190 22 0 0 0 chr3 79353461 79353483 -80246300 + AT_rich Low_complexity Low_complexity 1 22 0 6 1190 424 296 22 29 chr3 79353535 79353674 -80246109 + RSINE1 SINE B4 19 156 -9 6 1190 933 218 39 29 chr3 79353744 79353952 -80245831 - B3 SINE B2 -4 212 3 6 1190 209 164 0 62 chr3 79353952 79354017 -80245766 + T-rich Low_complexity Low_complexity 2 62 0 6 1190 604 259 15 7 chr3 79354025 79354161 -80245622 - B1F2 SINE Alu -7 142 6 6 1190 466 254 73 7 chr3 79355151 79355289 -80244494 - B1F SINE Alu 0 149 1 6 1190 219 380 73 53 chr3 79355289 79355334 -80244449 - B4 SINE B4 -199 93 46 6 1190 958 168 129 21 chr3 79355401 79355595 -80244188 + B3 SINE B2 2 216 0 6 1190 222 180 0 0 chr3 79355721 79355782 -80244001 + C-rich Low_complexity Low_complexity 1 61 0 6 1190 598 274 159 18 chr3 79356101 79356328 -80243455 + RMER15 LTR ERVL 317 575 0 6 1190 273 29 0 0 chr3 79356482 79356516 -80243267 + (TG)n Simple_repeat Simple_repeat 2 35 0 6 1190 393 280 322 46 chr3 79357412 79357608 -80242175 + B4A SINE B4 43 292 0 6 1190 212 326 108 11 chr3 79357974 79358067 -80241716 + MER5B DNA MER1_type 16 117 -61 6 1190 650 315 16 62 chr3 79358161 79358466 -80241317 + B4A SINE B4 2 292 0 6 1190 321 272 142 28 chr3 79358700 79358806 -80240977 + RSINE1 SINE B4 45 162 -3 6 1190 212 116 0 65 chr3 79359766 79359779 -80240004 + A-rich Low_complexity Low_complexity 1 11 0 6 1190 1240 41 0 0 chr3 79359779 79359925 -80239858 + B1_Mm SINE Alu 2 147 0 6 1190 212 116 0 65 chr3 79359925 79359957 -80239826 + A-rich Low_complexity Low_complexity 12 43 0 6 1190 1296 87 16 21 chr3 79360146 79360334 -80239449 - B2_Mm2 SINE B2 -7 188 2 6 1190 809 245 30 15 chr3 79360824 79361023 -80238760 + B3 SINE B2 2 203 -13 6 1190 201 147 0 0 chr3 79361023 79361057 -80238726 + (CA)n Simple_repeat Simple_repeat 1 34 0 6 1190 441 103 0 0 chr3 79361156 79361224 -80238559 + (CA)n Simple_repeat Simple_repeat 2 69 0 6 1190 272 296 5 27 chr3 79361284 79361364 -80238419 + PB1D10 SINE Alu 7 88 -39 6 1190 374 213 27 0 chr3 79361366 79361441 -80238342 + RSINE1 SINE B4 21 97 -68 6 1190 483 100 0 0 chr3 79361444 79361514 -80238269 + (TG)n Simple_repeat Simple_repeat 1 70 0 6 1190 1702 178 52 6 chr3 79361518 79361862 -80237921 + MYSERV-int LTR ERVK 6189 6548 -2 6 1190 1312 157 61 8 chr3 79361863 79362323 -80237460 + RLTR11A2 LTR ERVK 1 519 -8 6 1190 1034 153 60 11 chr3 79362323 79362508 -80237275 + B2_Mm2 SINE B2 1 194 -1 6 1190 1137 42 0 53 chr3 79362542 79362694 -80237089 - B1_Mus1 SINE Alu -1 147 4 6 1190 447 294 84 0 chr3 79362715 79362858 -80236925 - RSINE1 SINE B4 -6 159 5 7 1190 207 0 0 0 chr3 79363633 79363656 -80236127 + (CAA)n Simple_repeat Simple_repeat 2 24 0 7 1190 295 280 32 21 chr3 79363788 79363883 -80235900 + B1_Mus2 SINE Alu 50 145 -2 7 1190 346 218 105 38 chr3 79363933 79364038 -80235745 + PB1D10 SINE Alu 1 112 -5 7 1190 1104 82 0 7 chr3 79364181 79364329 -80235454 + B1_Mus1 SINE Alu 1 147 -1 7 1190 739 237 27 45 chr3 79364516 79364737 -80235046 - ID_B1 SINE B4 -6 218 2 7 1190 1567 23 0 0 chr3 79364826 79364999 -80234784 + B2_Mm1a SINE B2 3 175 -18 7 1190 37 23 0 0 chr3 79365007 79365051 -80234732 + AT_rich Low_complexity Low_complexity 1 44 0 7 1190 442 318 13 31 chr3 79365950 79366109 -80233674 - ID_B1 SINE B4 -1 223 68 7 1190 539 279 130 21 chr3 79366284 79366522 -80233261 + B4A SINE B4 1 264 -28 7 1190 294 143 0 0 chr3 79366585 79366648 -80233135 + (TC)n Simple_repeat Simple_repeat 1 63 0 7 1190 261 0 0 0 chr3 79366650 79366679 -80233104 + (CA)n Simple_repeat Simple_repeat 2 30 0 7 1190 920 68 0 0 chr3 79366807 79366924 -80232859 + B1_Mus2 SINE Alu 2 118 -29 7 1190 472 219 39 70 chr3 79366809 79366937 -80232846 + MT2B LTR ERVL 168 291 -310 7 1190 261 57 0 0 chr3 79367033 79367068 -80232715 + (CA)n Simple_repeat Simple_repeat 1 35 0 7 1190 915 145 36 0 chr3 79367531 79367669 -80232114 + B1_Mur4 SINE Alu 1 143 -7 7 1190 284 316 26 9 chr3 79367680 79367795 -80231988 + PB1D10 SINE Alu 1 117 0 7 1190 414 0 0 0 chr3 79367864 79367910 -80231873 + (TAA)n Simple_repeat Simple_repeat 2 47 0 7 1190 1424 70 0 36 chr3 79368034 79368228 -80231555 + B2_Mm2 SINE B2 2 188 -7 7 1190 260 186 395 0 chr3 79368369 79368455 -80231328 + B3 SINE B2 1 120 -96 7 1190 189 121 0 0 chr3 79368472 79368505 -80231278 + (CATA)n Simple_repeat Simple_repeat 4 36 0 7 1190 250 241 67 78 chr3 79369005 79369095 -80230688 + PB1D10 SINE Alu 2 90 -27 7 1190 316 316 56 43 chr3 79369206 79369368 -80230415 + RSINE1 SINE B4 2 165 0 7 1190 306 0 0 0 chr3 79369899 79369933 -80229850 + (CA)n Simple_repeat Simple_repeat 1 34 0 7 1190 344 261 10 80 chr3 79369975 79370075 -80229708 + B1F1 SINE Alu 1 93 -56 7 1190 415 294 63 18 chr3 79370189 79370283 -80229500 + B1F SINE Alu 4 101 -19 7 1190 207 0 0 0 chr3 79370283 79370306 -80229477 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 7 1190 389 294 63 18 chr3 79370306 79370322 -80229461 + PB1D7 SINE Alu 102 118 -2 7 1190 195 42 0 0 chr3 79370383 79370407 -80229376 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 7 1190 29 108 0 0 chr3 79371533 79371653 -80228130 + GC_rich Low_complexity Low_complexity 1 120 0 7 1190 23 0 0 0 chr3 79371675 79371698 -80228085 + GC_rich Low_complexity Low_complexity 1 23 0 7 1190 363 278 6 28 chr3 79371743 79371941 -80227842 + GA-rich Low_complexity Low_complexity 1 193 0 7 1190 228 305 5 68 chr3 79371909 79372099 -80227684 + G-rich Low_complexity Low_complexity 2 179 0 7 1190 449 287 40 46 chr3 79373010 79373185 -80226598 + B3A SINE B2 3 176 -22 7 1190 288 0 0 0 chr3 79373198 79373230 -80226553 + (CA)n Simple_repeat Simple_repeat 1 32 0 7 1190 23 0 0 0 chr3 79373704 79373727 -80226056 + AT_rich Low_complexity Low_complexity 1 23 0 7 1190 466 190 8 8 chr3 79373982 79374099 -80225684 + (TA)n Simple_repeat Simple_repeat 1 117 0 7 1190 5136 52 2 0 chr3 79374214 79374834 -80224949 - L1Md_F2 LINE L1 0 6582 5962 7 1190 663 281 79 4 chr3 79374837 79375066 -80224717 - Looper DNA PiggyBac -949 609 364 7 1190 501 285 14 35 chr3 79375303 79375445 -80224338 + ID_B1 SINE B4 85 223 -1 7 1190 3354 72 8 40 chr3 79375445 79375919 -80223864 + Lx3A LINE L1 6519 6977 -4 7 1190 432 262 10 10 chr3 79376534 79376638 -80223145 - PB1D10 SINE Alu -8 109 6 7 1190 263 316 0 69 chr3 79376551 79376653 -80223130 - ID_B1 SINE B4 -52 172 78 7 1190 609 275 182 8 chr3 79376784 79377026 -80222757 - B4A SINE B4 0 292 9 7 1190 915 293 4 0 chr3 79377020 79377245 -80222538 - B4A SINE B4 -59 233 8 7 1190 1112 83 0 0 chr3 79377255 79377400 -80222383 - B1_Mus2 SINE Alu 0 147 3 7 1190 1286 71 15 80 chr3 79377446 79377537 -80222246 - B2_Mm2 SINE B2 -8 187 109 7 1190 3232 34 8 0 chr3 79377537 79377919 -80221864 + L1Md_F2 LINE L1 6198 6582 0 7 1190 1286 71 15 80 chr3 79377919 79378027 -80221756 - B2_Mm2 SINE B2 -87 108 1 7 1190 931 261 76 72 chr3 79378028 79378543 -80221240 - L1MA7 LINE L1 -15 6276 5760 7 1190 273 221 15 0 chr3 79378570 79378638 -80221145 - ID4 SINE ID -13 70 2 7 1190 277 325 17 9 chr3 79378689 79378804 -80220979 - PB1D10 SINE Alu -1 116 1 7 1190 189 154 0 0 chr3 79378816 79378855 -80220928 + T-rich Low_complexity Low_complexity 1 39 0 7 1190 1007 32 8 0 chr3 79378856 79378980 -80220803 - B1_Mus1 SINE Alu 0 148 24 7 1190 21 36 0 0 chr3 79378980 79379008 -80220775 + AT_rich Low_complexity Low_complexity 1 28 0 7 1190 2963 49 30 15 chr3 79379008 79379402 -80220381 + L1Md_F2 LINE L1 6172 6571 -11 7 1190 23 0 0 0 chr3 79379427 79379450 -80220333 + AT_rich Low_complexity Low_complexity 1 23 0 7 1190 1050 167 59 48 chr3 79379850 79380034 -80219749 - RMER17C LTR ERVK -2 408 226 7 1190 711 71 0 0 chr3 79380034 79380132 -80219651 + (GA)n Simple_repeat Simple_repeat 1 98 0 7 1190 1050 175 32 46 chr3 79380132 79380361 -80219422 - RMER17C LTR ERVK -421 330 6 7 1190 424 280 13 0 chr3 79380563 79380732 -80219051 + CT-rich Low_complexity Low_complexity 1 171 0 7 1190 468 0 0 0 chr3 79381147 79381199 -80218584 + (TTTA)n Simple_repeat Simple_repeat 2 53 0 7 1190 565 246 62 0 chr3 79381199 79381329 -80218454 - B1_Mur3 SINE Alu -9 140 3 7 1190 515 248 141 0 chr3 79381471 79381592 -80218191 - ID_B1 SINE B4 0 224 87 7 1190 388 351 52 16 chr3 79381597 79381791 -80217992 + L2a LINE L2 2446 2646 -773 7 1190 327 215 12 48 chr3 79381794 79381877 -80217906 + ID4_ SINE ID 3 82 -1 7 1190 201 239 114 0 chr3 79382274 79382362 -80217421 + L2a LINE L2 3088 3185 -241 7 1190 361 311 0 48 chr3 79382397 79382522 -80217261 - PB1D7 SINE Alu -1 119 1 7 1190 315 211 67 53 chr3 79382555 79382630 -80217153 - L1MC LINE L1 -2339 5543 5468 7 1190 576 232 65 7 chr3 79382648 79382787 -80216996 - B1F SINE Alu 0 149 3 7 1190 215 219 0 0 chr3 79383049 79383090 -80216693 + (TATG)n Simple_repeat Simple_repeat 2 42 0 7 1190 1360 56 44 6 chr3 79383311 79383491 -80216292 + B2_Mm1t SINE B2 2 188 -5 7 1190 870 38 0 0 chr3 79383529 79383635 -80216148 + (TCTA)n Simple_repeat Simple_repeat 3 108 0 7 1190 431 220 106 41 chr3 79384448 79384571 -80215212 - B1F SINE Alu -2 147 17 7 1190 267 258 174 10 chr3 79384653 79384751 -80215032 + MIRb SINE MIR 98 211 -57 7 1190 305 41 61 0 chr3 79384793 79384842 -80214941 + (GAAAA)n Simple_repeat Simple_repeat 2 53 0 7 1190 617 283 0 7 chr3 79384842 79384981 -80214802 + ID_B1 SINE B4 80 217 -7 7 1190 1259 109 11 0 chr3 79385046 79385229 -80214554 - B2_Mm1t SINE B2 -8 185 1 7 1190 245 350 10 20 chr3 79385254 79385356 -80214427 + L1MC LINE L1 5519 5619 -2263 7 1190 588 306 25 0 chr3 79385411 79385568 -80214215 + B3A SINE B2 4 164 -34 7 1190 342 91 0 0 chr3 79385569 79385624 -80214159 + (CA)n Simple_repeat Simple_repeat 2 56 0 7 1190 729 201 8 0 chr3 79385761 79385895 -80213888 + B1_Mur1 SINE Alu 1 135 -14 7 1190 468 0 0 0 chr3 79385901 79385953 -80213830 + (TG)n Simple_repeat Simple_repeat 2 53 0 7 1190 232 343 0 29 chr3 79386042 79386111 -80213672 - ID4_ SINE ID -5 78 12 7 1190 253 259 0 96 chr3 79386215 79386229 -80213554 + MT2B LTR ERVL 157 161 -440 7 1190 563 167 60 0 chr3 79386229 79386337 -80213446 + PB1D9 SINE Alu 1 142 -6 7 1190 585 288 115 5 chr3 79387218 79387410 -80212373 - B4 SINE B4 -79 213 1 7 1190 593 276 125 11 chr3 79387435 79387611 -80212172 + B4A SINE B4 53 248 -44 7 1190 1205 91 45 0 chr3 79387612 79387788 -80211995 - RLTR11A LTR ERVK 0 528 345 7 1190 340 190 37 25 chr3 79387880 79387961 -80211822 + RLTR11A LTR ERVK 216 297 -231 7 1190 470 104 0 25 chr3 79387967 79388046 -80211737 + (TTTC)n Simple_repeat Simple_repeat 4 80 0 7 1190 844 120 29 36 chr3 79388057 79388195 -80211588 - B1_Mur3 SINE Alu 0 149 13 7 1190 618 191 0 0 chr3 79388203 79388329 -80211454 + CT-rich Low_complexity Low_complexity 2 127 0 7 1190 1268 49 0 0 chr3 79388332 79388475 -80211308 - B1_Mm SINE Alu 0 147 5 7 1190 294 274 14 14 chr3 79388691 79388765 -80211018 - ID SINE ID -149 75 2 7 1190 263 261 58 0 chr3 79388816 79388885 -80210898 + PB1D10 SINE Alu 7 79 -38 7 1190 1200 123 0 10 chr3 79389361 79389755 -80210028 + (CA)n Simple_repeat Simple_repeat 1 390 0 7 1190 302 208 0 0 chr3 79389755 79389808 -80209975 + HAL1-3A_ME LINE L1 1975 2027 -831 7 1190 1008 144 0 0 chr3 79389838 79390069 -80209714 + (CA)n Simple_repeat Simple_repeat 1 231 0 7 1190 22 35 0 0 chr3 79390069 79390098 -80209685 + AT_rich Low_complexity Low_complexity 1 29 0 7 1190 263 276 17 0 chr3 79390452 79390510 -80209273 + ID4_ SINE ID 22 80 -3 7 1190 267 152 0 0 chr3 79391502 79391548 -80208235 + (CAAT)n Simple_repeat Simple_repeat 4 49 0 7 1190 404 255 66 0 chr3 79391666 79391772 -80208011 - B1_Mur1 SINE Alu -19 130 18 7 1190 600 93 16 136 chr3 79391840 79391965 -80207818 + B1_Mus1 SINE Alu 40 149 0 7 1190 1497 86 0 16 chr3 79392076 79392266 -80207517 + B2_Mm2 SINE B2 1 187 -8 8 1190 758 269 0 40 chr3 79392590 79392791 -80206992 + B3A SINE B2 2 194 -4 8 1190 218 116 23 0 chr3 79393092 79393135 -80206648 + (TG)n Simple_repeat Simple_repeat 2 45 0 8 1190 634 261 174 0 chr3 79393136 79393331 -80206452 - B4A SINE B4 -2 290 62 8 1190 484 200 0 0 chr3 79393477 79393567 -80206216 - ORR1D2 LTR MaLR 0 370 281 8 1190 300 313 36 0 chr3 79393649 79393732 -80206051 - PB1D7 SINE Alu -1 119 34 8 1190 291 294 29 10 chr3 79393766 79393869 -80205914 - PB1D10 SINE Alu 0 117 13 8 1190 3672 112 62 25 chr3 79393898 79394463 -80205320 - Lx LINE L1 -3 6651 6066 8 1190 328 199 3 5 chr3 79394474 79394553 -80205230 - B1F2 SINE Alu -20 107 24 8 1190 472 295 24 16 chr3 79394883 79395007 -80204776 - RSINE1 SINE B4 0 165 41 8 1190 280 232 147 0 chr3 79395020 79395126 -80204657 - MIRc SINE MIR -101 167 35 8 1190 663 128 356 58 chr3 79396046 79396220 -80203563 + URR1A DNA MER1_type 1 226 0 8 1190 1366 86 0 51 chr3 79396587 79396784 -80202999 - B2_Mm2 SINE B2 -7 188 2 8 1190 565 292 141 12 chr3 79396996 79397404 -80202379 + L1MA8 LINE L1 5620 6097 -194 8 1190 1064 103 14 0 chr3 79397759 79397904 -80201879 - B1_Mm SINE Alu 0 147 1 8 1190 599 167 242 32 chr3 79398440 79398564 -80201219 + B1_Mur4 SINE Alu 1 150 0 8 1190 203 191 0 67 chr3 79398564 79398598 -80201185 + polypurine Low_complexity Low_complexity 11 44 0 8 1190 348 336 35 56 chr3 79399408 79399550 -80200233 - ID_B1 SINE B4 -2 222 84 8 1190 299 287 92 9 chr3 79399573 79399682 -80200101 - ID_B1 SINE B4 -105 119 2 8 1190 408 258 23 35 chr3 79399701 79399844 -80199939 - PB1D10 SINE Alu -14 136 2 8 1190 516 245 9 9 chr3 79400529 79400636 -80199147 - B1_Mur1 SINE Alu -41 108 2 8 1190 520 161 25 51 chr3 79403229 79403347 -80196436 + B1_Mur3 SINE Alu 34 148 -1 8 1190 237 235 162 0 chr3 79403371 79403439 -80196344 - ID4_ SINE ID -4 79 1 8 1190 242 259 221 7 chr3 79403495 79403631 -80196152 - L1MC4a LINE L1 -1034 6848 6684 8 1190 183 114 0 0 chr3 79403631 79403666 -80196117 + (C)n Simple_repeat Simple_repeat 1 35 0 8 1190 1109 50 49 7 chr3 79404009 79404151 -80195632 - B1_Mus1 SINE Alu 0 148 1 8 1190 319 301 0 0 chr3 79404620 79404693 -80195090 + ID_B1 SINE B4 93 165 -59 8 1190 317 284 63 0 chr3 79404693 79404715 -80195068 + PB1D7 SINE Alu 12 112 -8 8 1190 652 230 28 43 chr3 79405054 79405195 -80194588 - RSINE1 SINE B4 -23 142 4 8 1190 26 64 0 0 chr3 79405938 79405985 -80193798 + AT_rich Low_complexity Low_complexity 1 47 0 8 1190 925 127 20 13 chr3 79407329 79407481 -80192302 + URR1B DNA MER1_type 73 225 0 8 1190 429 109 0 0 chr3 79408755 79408819 -80190964 + (TG)n Simple_repeat Simple_repeat 2 65 0 8 1190 240 254 68 0 chr3 79409199 79409258 -80190525 - PB1D10 SINE Alu -13 104 42 8 1190 243 0 0 0 chr3 79409843 79409870 -80189913 + (TG)n Simple_repeat Simple_repeat 1 27 0 8 1190 1272 55 0 0 chr3 79410006 79410152 -80189631 + B1_Mm SINE Alu 2 147 0 8 1190 4775 35 11 9 chr3 79410347 79410894 -80188889 + L1Md_F3 LINE L1 6037 6584 0 8 1190 1678 37 21 0 chr3 79411456 79411644 -80188139 - B2_Mm1a SINE B2 0 193 2 8 1190 287 300 0 48 chr3 79411721 79411805 -80187978 - ID4 SINE ID -3 80 1 8 1190 1424 71 49 6 chr3 79411819 79412002 -80187781 - B2_Mm2 SINE B2 -3 192 2 8 1190 205 316 143 0 chr3 79412078 79412176 -80187607 - L2a LINE L2 -81 3345 3234 8 1190 183 167 167 0 chr3 79412248 79412314 -80187469 - L2a LINE L2 -369 3057 2981 8 1190 243 0 0 0 chr3 79412402 79412429 -80187354 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 8 1190 1309 67 70 37 chr3 79412538 79412725 -80187058 - B2_Mm2 SINE B2 -2 193 1 8 1190 430 288 90 45 chr3 79412830 79413008 -80186775 + B3A SINE B2 9 194 -4 8 1190 197 179 12 49 chr3 79413082 79413164 -80186619 + (TAA)n Simple_repeat Simple_repeat 3 81 0 8 1190 222 233 45 23 chr3 79413174 79413306 -80186477 + (TA)n Simple_repeat Simple_repeat 1 135 0 8 1190 368 297 109 0 chr3 79413381 79413482 -80186301 - PB1D9 SINE Alu -8 112 1 8 1190 1134 56 0 0 chr3 79413518 79413661 -80186122 + B2_Mm2 SINE B2 1 143 -52 8 1190 464 313 82 0 chr3 79414594 79414741 -80185042 + RSINE1 SINE B4 3 161 -4 8 1190 564 200 18 9 chr3 79415335 79415446 -80184337 - PB1D9 SINE Alu -3 117 6 8 1190 823 215 120 0 chr3 79415469 79415660 -80184123 - B3 SINE B2 0 216 3 8 1190 965 116 51 0 chr3 79416239 79416377 -80183406 + B1_Mus1 SINE Alu 2 146 -2 8 1190 225 65 0 0 chr3 79416759 79416790 -80182993 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 8 1190 186 290 145 0 chr3 79416829 79416891 -80182892 + MIRb SINE MIR 4 74 -194 8 1190 1398 192 173 16 chr3 79416897 79417220 -80182563 + ORR1D1 LTR MaLR 1 374 0 8 1190 21 0 0 0 chr3 79417720 79417741 -80182042 + AT_rich Low_complexity Low_complexity 1 21 0 8 1190 602 24 24 0 chr3 79418088 79418171 -80181612 - L1Md_F2 LINE L1 0 6582 6498 8 1190 350 183 127 0 chr3 79418220 79418291 -80181492 - ID4_ SINE ID -2 81 2 8 1190 648 38 0 0 chr3 79418297 79418376 -80181407 + (CATA)n Simple_repeat Simple_repeat 2 80 0 8 1190 478 205 26 0 chr3 79418445 79418523 -80181260 + ID4_ SINE ID 4 83 0 8 1190 392 127 0 0 chr3 79419316 79419371 -80180412 - B1_Mus2 SINE Alu -92 55 1 8 1190 380 194 80 70 chr3 79419371 79419415 -80180368 - B4A SINE B4 -151 140 41 8 1190 444 100 0 54 chr3 79419435 79419509 -80180274 - B2_Mm2 SINE B2 -123 72 3 8 1190 180 0 0 0 chr3 79419587 79419607 -80180176 + (T)n Simple_repeat Simple_repeat 1 20 0 8 1190 346 232 126 39 chr3 79419706 79419809 -80179974 - PB1D10 SINE Alu -5 112 1 8 1190 1726 183 144 45 chr3 79420244 79420639 -80179144 + RLTR20C LTR ERVK 1 442 -92 8 1190 579 51 0 0 chr3 79420639 79420718 -80179065 + (TG)n Simple_repeat Simple_repeat 2 80 0 8 1190 1726 183 144 45 chr3 79420718 79420808 -80178975 + RLTR20C LTR ERVK 443 533 -1 8 1190 221 306 34 45 chr3 79420943 79421032 -80178751 + L3 LINE CR1 3716 3803 -686 8 1190 580 227 196 17 chr3 79421177 79421356 -80178427 - B3 SINE B2 -4 212 2 8 1190 702 202 89 0 chr3 79421372 79421496 -80178287 - B1_Mur1 SINE Alu -12 137 3 8 1190 428 303 77 29 chr3 79422577 79422747 -80177036 + MIR3 SINE MIR 31 208 0 8 1190 299 289 19 19 chr3 79422930 79423036 -80176747 + MER67C LTR ERV1 55 160 -551 8 1190 749 216 94 22 chr3 79423031 79423211 -80176572 - B3 SINE B2 -4 212 20 8 1190 735 210 155 41 chr3 79423711 79423905 -80175878 + B3 SINE B2 1 216 0 8 1190 1227 189 39 10 chr3 79424084 79424292 -80175491 + B3 SINE B2 2 215 -1 8 1190 1343 108 11 21 chr3 79424322 79424511 -80175272 + B2_Mm2 SINE B2 1 187 -8 8 1190 2620 95 0 0 chr3 79424533 79424860 -80174923 + ORR1A2 LTR MaLR 1 327 0 8 1190 6842 78 6 138 chr3 79424862 79426000 -80173783 + ORR1A2-int LTR MaLR 1 981 -117 8 1190 1429 62 11 0 chr3 79426000 79426179 -80173604 + L1_Mus1 LINE L1 6386 6566 -1 8 1190 6842 78 6 138 chr3 79426179 79426304 -80173479 + ORR1A2-int LTR MaLR 982 1097 -1 8 1190 301 213 73 21 chr3 79426321 79426417 -80173366 - PB1D10 SINE Alu 0 117 17 8 1190 298 289 19 135 chr3 79426339 79426495 -80173288 - ID_B1 SINE B4 -48 176 39 8 1190 587 310 44 33 chr3 79427116 79427296 -80172487 + ID_B1 SINE B4 43 224 0 8 1190 1078 85 0 0 chr3 79427675 79427805 -80171978 - B1_Mus1 SINE Alu -18 130 1 8 1190 943 163 214 0 chr3 79427921 79428099 -80171684 - B3 SINE B2 0 216 1 8 1190 1103 100 53 53 chr3 79428118 79428308 -80171475 - B2_Mm2 SINE B2 0 195 6 8 1190 700 234 26 40 chr3 79428536 79428687 -80171096 - B1_Mur1 SINE Alu 0 149 1 8 1190 227 269 76 13 chr3 79428740 79428819 -80170964 + MLT1F2 LTR MaLR 49 132 -428 8 1190 690 279 136 57 chr3 79428820 79429223 -80170560 + L1MD3 LINE L1 7410 7836 -159 8 1190 1181 55 6 70 chr3 79429223 79429356 -80170427 - B1_Mus1 SINE Alu 0 148 25 8 1190 1708 32 5 0 chr3 79429356 79429545 -80170238 + B2_Mm1a SINE B2 2 191 -2 8 1190 1181 55 6 70 chr3 79429545 79429568 -80170215 - B1_Mus1 SINE Alu -124 24 2 8 148 690 279 136 57 chr3 79429568 79429707 -80170076 + L1MD3 LINE L1 7837 7994 -1 8 1191 734 176 66 0 chr3 79429760 79429896 -80169887 + B1_Mur1 SINE Alu 5 149 0 8 1191 548 221 300 18 chr3 79430169 79430339 -80169444 + ID_B1 SINE B4 3 220 -4 8 1191 235 208 42 0 chr3 79430510 79430526 -80169257 + A-rich Low_complexity Low_complexity 4 19 0 8 1191 1202 62 7 0 chr3 79430526 79430671 -80169112 + B1_Mus2 SINE Alu 2 147 0 8 1191 248 193 20 9 chr3 79430671 79430735 -80169048 + A-rich Low_complexity Low_complexity 1 64 0 8 1191 22 0 0 0 chr3 79430791 79430813 -80168970 + AT_rich Low_complexity Low_complexity 1 22 0 8 1191 886 137 35 28 chr3 79430997 79431140 -80168643 + B1_Mur4 SINE Alu 2 145 -5 8 1191 3136 44 14 0 chr3 79433769 79434135 -80165648 - L1Md_F2 LINE L1 -2 6580 6210 8 1191 207 0 0 0 chr3 79434827 79434850 -80164933 + (T)n Simple_repeat Simple_repeat 1 23 0 8 1191 1201 44 0 7 chr3 79435957 79436095 -80163688 + B1_Mus2 SINE Alu 2 138 -9 8 1191 29 0 0 0 chr3 79436705 79436734 -80163049 + AT_rich Low_complexity Low_complexity 1 29 0 8 1191 278 217 0 0 chr3 79437041 79437087 -80162696 - ID4_ SINE ID -11 72 27 9 1191 266 290 0 42 chr3 79437133 79437205 -80162578 - ID_B1 SINE B4 -2 222 154 9 1191 330 188 34 45 chr3 79437655 79437744 -80162039 - L1MB7 LINE L1 0 6184 6095 9 1191 362 247 155 20 chr3 79437836 79438075 -80161708 - L1MB7 LINE L1 -328 5972 5698 9 1191 10233 10 1 0 chr3 79438077 79439366 -80160417 + L1Md_Gf LINE L1 1 1142 -5380 9 1191 7467 45 41 41 chr3 79442664 79442998 -80156785 + L1_Mm LINE L1 4534 4888 -995 9 1191 242 167 46 77 chr3 79442998 79443063 -80156720 - RMER20A LTR ERVK -268 248 186 9 1191 7467 45 41 41 chr3 79443063 79443717 -80156066 + L1_Mm LINE L1 4889 5586 -297 9 1191 9598 5 0 0 chr3 79443717 79444713 -80155070 + L1Md_T LINE L1 5587 6582 0 9 1191 354 232 82 44 chr3 79444742 79444877 -80154906 - L1MB7 LINE L1 -488 5686 5547 9 1191 615 298 13 7 chr3 79444888 79445040 -80154743 - B3A SINE B2 -18 180 28 9 1191 232 298 114 16 chr3 79445059 79445182 -80154601 - L1MB7 LINE L1 -981 5165 5031 9 1191 333 0 0 0 chr3 79445407 79445444 -80154339 + (TC)n Simple_repeat Simple_repeat 1 37 0 9 1191 216 0 0 0 chr3 79445444 79445467 -80154316 + (CA)n Simple_repeat Simple_repeat 1 24 0 9 1191 244 186 85 0 chr3 79445626 79445685 -80154098 + L1_Mur3 LINE L1 4254 4317 -1563 9 1191 330 283 19 70 chr3 79445765 79445921 -80153862 - L1_Rod LINE L1 -165 5682 5535 9 1191 313 313 41 18 chr3 79445952 79446121 -80153662 - L1MB7 LINE L1 -1884 4256 4084 9 1191 639 318 82 80 chr3 79446123 79446714 -80153069 + RLTR18 LTR ERVK 1 592 -24 9 1191 641 312 86 33 chr3 79446742 79446911 -80152872 - L1MB7 LINE L1 -2053 4087 3909 9 1191 189 0 0 0 chr3 79446911 79446932 -80152851 + (TG)n Simple_repeat Simple_repeat 2 22 0 9 1191 641 312 86 33 chr3 79446932 79447276 -80152507 - L1MB7 LINE L1 -2232 3908 3549 9 1191 241 187 171 13 chr3 79447338 79447414 -80152369 - L1M4 LINE L1 -1269 4877 4790 9 1191 339 25 0 0 chr3 79447577 79447617 -80152166 + (TG)n Simple_repeat Simple_repeat 1 40 0 9 1191 260 316 51 31 chr3 79447659 79447757 -80152026 - PB1D10 SINE Alu -17 100 1 9 1191 631 320 7 13 chr3 79447757 79447829 -80151954 - B4A SINE B4 -207 85 15 9 1191 336 330 10 0 chr3 79447857 79447960 -80151823 - PB1D10 SINE Alu -12 105 2 9 1191 689 258 18 25 chr3 79448098 79448261 -80151522 - RSINE1 SINE B4 -2 163 2 9 1191 243 0 0 0 chr3 79448456 79448483 -80151300 + (CA)n Simple_repeat Simple_repeat 2 28 0 9 1191 211 268 139 14 chr3 79449341 79449413 -80150370 - ID SINE ID -142 82 2 9 1191 237 227 0 0 chr3 79449455 79449499 -80150284 + (TG)n Simple_repeat Simple_repeat 2 45 0 9 1191 554 265 62 18 chr3 79449508 79449690 -80150093 - B4A SINE B4 -95 197 6 9 1191 818 203 14 7 chr3 79449789 79449928 -80149855 + B1_Mur3 SINE Alu 1 140 -9 9 1191 347 326 15 12 chr3 79450049 79450159 -80149624 + ID4_ SINE ID 6 113 -39 9 1191 751 283 0 29 chr3 79450206 79450410 -80149373 - B3A SINE B2 0 198 1 9 1191 1035 266 47 7 chr3 79450634 79450978 -80148805 - L1MB3 LINE L1 -9 6174 5820 9 1191 846 232 53 0 chr3 79450978 79451129 -80148654 + RSINE1 SINE B4 3 161 -4 9 1191 701 308 32 122 chr3 79451129 79451575 -80148208 - L1MB3 LINE L1 -370 5819 5442 9 1191 365 263 30 20 chr3 79452341 79452442 -80147341 - B1F SINE Alu -2 147 46 9 1191 3213 212 76 33 chr3 79452461 79454024 -80145759 + L1_Mur3 LINE L1 341 1967 -3913 9 1191 1097 162 25 5 chr3 79454024 79454223 -80145560 + URR1B DNA MER1_type 23 225 0 9 1191 1617 43 11 0 chr3 79454859 79455044 -80144739 - B2_Mm1a SINE B2 -5 188 2 9 1191 291 149 0 0 chr3 79455116 79455163 -80144620 - B3 SINE B2 -169 47 1 9 1191 736 238 41 53 chr3 79455176 79455528 -80144255 - Lx7 LINE L1 0 7696 7198 9 1191 1245 135 10 0 chr3 79456661 79456853 -80142930 + URR1B DNA MER1_type 1 194 -31 9 1191 215 238 23 23 chr3 79458264 79458350 -80141433 + (TA)n Simple_repeat Simple_repeat 1 86 0 9 1191 399 286 130 90 chr3 79458426 79458703 -80141080 - B4 SINE B4 -4 288 1 9 1191 726 231 107 34 chr3 79458967 79459173 -80140610 - MLT1A0 LTR MaLR 0 365 145 9 1191 206 227 0 22 chr3 79459174 79459219 -80140564 + CT-rich Low_complexity Low_complexity 4 47 0 9 1191 278 206 122 14 chr3 79459587 79459661 -80140122 - B4A SINE B4 -208 84 3 9 1191 599 243 28 7 chr3 79459754 79459895 -80139888 - B1_Mur1 SINE Alu -2 147 4 9 1191 509 232 40 40 chr3 79459904 79460052 -80139731 - MLT1A0 LTR MaLR -214 151 4 9 1191 24 53 0 0 chr3 79460075 79460113 -80139670 + AT_rich Low_complexity Low_complexity 1 38 0 9 1191 501 17 0 0 chr3 79460634 79460692 -80139091 + (TG)n Simple_repeat Simple_repeat 2 59 0 9 1191 734 205 144 12 chr3 79460745 79461012 -80138771 + MTD LTR MaLR 18 400 -19 9 1191 594 246 51 123 chr3 79461517 79462005 -80137778 + L1M3 LINE L1 4980 5419 -893 9 1191 276 226 131 20 chr3 79462058 79462165 -80137618 + MLT1A1 LTR MaLR 239 403 -5 9 1191 231 139 21 28 chr3 79462175 79462231 -80137552 + L1MB3 LINE L1 4498 4551 -1595 9 1191 499 294 133 38 chr3 79462330 79463095 -80136688 + L1MB3 LINE L1 4793 5649 -534 9 1191 273 288 79 40 chr3 79463321 79463473 -80136310 + MER47B DNA MER2_type 169 326 -92 9 1191 658 239 234 33 chr3 79463506 79463955 -80135828 + L1MB3 LINE L1 5644 6182 -1 9 1191 238 299 15 0 chr3 79464196 79464263 -80135520 - tRNA-Ala-GCY_ tRNA tRNA -7 68 1 9 1191 465 328 23 8 chr3 79464322 79464451 -80135332 + ID_B1 SINE B4 82 212 -12 9 1191 37 0 0 0 chr3 79465089 79465126 -80134657 + AT_rich Low_complexity Low_complexity 1 37 0 9 1191 520 259 0 25 chr3 79465410 79465529 -80134254 - PB1D10 SINE Alu -1 116 1 9 1191 2007 112 12 68 chr3 79465771 79466107 -80133676 - ORR1A3 LTR MaLR -9 317 1 9 1191 1040 266 22 47 chr3 79466107 79466383 -80133400 + MTE2a LTR MaLR 90 358 -21 9 1191 374 198 66 0 chr3 79466615 79466706 -80133077 + Lx9 LINE L1 7394 7490 -154 9 1191 783 59 0 0 chr3 79466714 79466815 -80132968 + (TCTA)n Simple_repeat Simple_repeat 1 101 0 9 1191 515 182 45 0 chr3 79466818 79466906 -80132877 - B1_Mur1 SINE Alu -36 113 22 9 1191 207 0 0 0 chr3 79466912 79466935 -80132848 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 9 1191 371 175 171 24 chr3 79466937 79467039 -80132744 - Lx9 LINE L1 -7 7637 7520 9 1191 251 114 23 0 chr3 79467039 79467083 -80132700 + (TA)n Simple_repeat Simple_repeat 1 45 0 9 1191 371 175 171 24 chr3 79467083 79467103 -80132680 - Lx9 LINE L1 -125 7519 7497 9 1191 205 146 49 0 chr3 79467108 79467149 -80132634 + (TCTA)n Simple_repeat Simple_repeat 1 43 0 9 1191 929 235 108 21 chr3 79467504 79467839 -80131944 - Lx9 LINE L1 -31 7613 7250 9 1191 256 329 40 0 chr3 79468204 79468280 -80131503 - ID4 SINE ID -1 82 4 9 1191 247 333 47 47 chr3 79468921 79469028 -80130755 + B4 SINE B4 84 190 -102 9 1191 534 206 0 38 chr3 79468934 79469040 -80130743 + PB1D7 SINE Alu 12 113 -7 9 1191 309 263 40 0 chr3 79469061 79469137 -80130646 - ID4_ SINE ID -2 81 3 9 1191 293 0 27 0 chr3 79469386 79469423 -80130360 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 9 1191 334 300 9 57 chr3 79469423 79469529 -80130254 - PB1D7 SINE Alu -18 102 2 9 1191 937 146 9 0 chr3 79470058 79470271 -80129512 + (TAGA)n Simple_repeat Simple_repeat 1 215 0 9 1191 219 69 0 0 chr3 79470301 79470330 -80129453 + (CAGA)n Simple_repeat Simple_repeat 3 31 0 9 1191 591 98 0 0 chr3 79470984 79471076 -80128707 + (TG)n Simple_repeat Simple_repeat 1 92 0 9 1191 1336 169 262 3 chr3 79471076 79471385 -80128398 + ORR1B1 LTR MaLR 5 393 -1 9 1191 624 233 77 8 chr3 79471385 79471515 -80128268 - RSINE1 SINE B4 -18 147 9 9 1191 450 292 68 14 chr3 79472708 79472854 -80126929 + RSINE1 SINE B4 3 156 -9 9 1191 759 251 17 87 chr3 79473047 79473278 -80126505 + B3 SINE B2 2 216 0 9 1191 3200 26 0 0 chr3 79473353 79473699 -80126084 + ORR1A0 LTR MaLR 1 346 0 9 1191 183 256 0 55 chr3 79473716 79473861 -80125922 + G-rich Low_complexity Low_complexity 4 140 0 9 1191 711 318 62 48 chr3 79474012 79474483 -80125300 + Lx8 LINE L1 5995 6471 -1002 9 1191 207 167 0 0 chr3 79474695 79474731 -80125052 + (GACTG)n Simple_repeat Simple_repeat 1 36 0 9 1191 577 281 113 13 chr3 79475116 79475347 -80124436 + Lx8 LINE L1 6764 7017 -456 9 1191 874 87 22 163 chr3 79475347 79475525 -80124258 + B2_Mm2 SINE B2 1 153 -42 9 1191 1158 236 119 34 chr3 79475525 79475911 -80123872 + Lx8 LINE L1 7054 7472 -1 9 1191 467 235 10 0 chr3 79476817 79476915 -80122868 + PB1D9 SINE Alu 14 112 -8 9 1191 1208 180 0 0 chr3 79476923 79477117 -80122666 + B3 SINE B2 1 194 -22 9 1191 243 0 0 0 chr3 79477117 79477144 -80122639 + (CAAA)n Simple_repeat Simple_repeat 4 30 0 9 1191 23 0 0 0 chr3 79477426 79477449 -80122334 + AT_rich Low_complexity Low_complexity 1 23 0 9 1191 470 239 64 68 chr3 79477690 79477756 -80122027 - CYRA11_Mm Unknown Y-chromosome -236 381 194 9 1191 857 152 7 0 chr3 79477756 79477901 -80121882 + URR1A DNA MER1_type 81 226 0 9 1191 492 18 0 0 chr3 79477976 79478033 -80121750 + (CA)n Simple_repeat Simple_repeat 2 58 0 9 1191 902 268 110 18 chr3 79478560 79478887 -80120896 - ORR1E LTR MaLR -1 358 2 9 1191 2314 120 76 8 chr3 79480392 79480746 -80119037 + ORR1C1 LTR MaLR 1 378 0 9 1191 217 132 0 0 chr3 79480769 79480807 -80118976 + (A)n Simple_repeat Simple_repeat 1 38 0 9 1191 341 236 42 0 chr3 79480810 79480882 -80118901 - ID4 SINE ID -7 76 2 9 1191 538 298 78 4 chr3 79480952 79481152 -80118631 - B3A SINE B2 0 216 1 9 1191 492 18 0 0 chr3 79481198 79481255 -80118528 + (CA)n Simple_repeat Simple_repeat 1 57 0 9 1191 322 208 194 0 chr3 79481270 79481342 -80118441 - RSINE1 SINE B4 -40 125 40 9 1191 483 18 0 0 chr3 79481372 79481428 -80118355 + (CA)n Simple_repeat Simple_repeat 1 56 0 9 1191 3910 108 160 7 chr3 79481456 79482019 -80117764 - RLTR33 LTR ERVK 0 678 25 9 1191 351 0 0 0 chr3 79482019 79482058 -80117725 + (TA)n Simple_repeat Simple_repeat 1 39 0 9 1191 3910 108 160 7 chr3 79482058 79482082 -80117701 - RLTR33 LTR ERVK -654 24 1 9 1191 390 42 0 0 chr3 79484243 79484291 -80115492 + (TG)n Simple_repeat Simple_repeat 2 49 0 9 1191 737 194 0 6 chr3 79484386 79484547 -80115236 + CT-rich Low_complexity Low_complexity 2 161 0 9 1191 283 173 40 0 chr3 79484812 79484887 -80114896 + CT-rich Low_complexity Low_complexity 4 81 0 1 1191 557 272 69 18 chr3 79485832 79486049 -80113734 + Kanga1b DNA Tc2 450 677 -102 1 1191 520 243 82 42 chr3 79486731 79486942 -80112841 - B3A SINE B2 -3 213 1 1 1191 290 123 18 0 chr3 79487219 79487276 -80112507 + (TG)n Simple_repeat Simple_repeat 1 58 0 1 1191 358 251 46 4 chr3 79488090 79488183 -80111600 + B1F2 SINE Alu 2 93 -54 1 1191 694 193 6 6 chr3 79488846 79489008 -80110775 + CT-rich Low_complexity Low_complexity 1 162 0 1 1191 257 227 65 26 chr3 79489024 79489101 -80110682 - PB1D10 SINE Alu -6 111 32 1 1191 22 0 0 0 chr3 79489294 79489316 -80110467 + AT_rich Low_complexity Low_complexity 1 22 0 1 1191 28 86 0 0 chr3 79489404 79489474 -80110309 + AT_rich Low_complexity Low_complexity 1 70 0 1 1191 339 325 0 0 chr3 79489495 79489575 -80110208 - ID4 SINE ID 0 83 4 1 1191 809 84 0 8 chr3 79490170 79490290 -80109493 + (TTTC)n Simple_repeat Simple_repeat 2 120 0 1 1191 761 162 3 33 chr3 79490296 79490462 -80109321 - RMER1B Other Other -11 1055 853 1 1191 1282 176 106 103 chr3 79491220 79491588 -80108195 + ORR1C2 LTR MaLR 1 369 -15 1 1191 338 259 24 12 chr3 79491632 79491714 -80108069 + B4A SINE B4 2 84 -208 1 1191 4574 58 22 7 chr3 79491778 79492330 -80107453 - LTRIS2 LTR ERV1 0 564 5 1 1191 1498 310 84 2 chr3 79492372 79492837 -80106946 + MTE2b-int LTR MaLR 1076 1578 -2 1 1191 683 332 14 19 chr3 79492843 79493055 -80106728 + MTE2b LTR MaLR 6 216 -163 1 1191 481 306 93 6 chr3 79493110 79493271 -80106512 + MTE2b LTR MaLR 190 364 -15 1 1191 315 0 0 0 chr3 79493375 79493410 -80106373 + (TG)n Simple_repeat Simple_repeat 2 36 0 1 1191 293 253 40 0 chr3 79493743 79493818 -80105965 + CT-rich Low_complexity Low_complexity 3 80 0 1 1191 701 282 153 41 chr3 79494385 79494725 -80105058 - MTE2a LTR MaLR 0 379 2 1 1191 1263 94 0 0 chr3 79494805 79494985 -80104798 + (TTC)n Simple_repeat Simple_repeat 1 180 0 1 1191 219 191 0 21 chr3 79495763 79495811 -80103972 + CT-rich Low_complexity Low_complexity 1 47 0 1 1191 324 0 0 0 chr3 79496748 79496784 -80102999 + (CAA)n Simple_repeat Simple_repeat 1 36 0 1 1191 273 280 81 50 chr3 79496905 79497127 -80102656 + L1_Rod LINE L1 681 909 -6263 1 1191 538 263 88 0 chr3 79497130 79497244 -80102539 + B3A SINE B2 2 125 -73 1 1191 879 310 16 53 chr3 79497246 79497696 -80102087 + L1_Mur3 LINE L1 1460 1892 -3988 1 1191 1713 278 47 39 chr3 79497709 79498312 -80101471 + Lx6 LINE L1 6449 7430 -30 1 1191 1481 242 138 24 chr3 79498297 79498915 -80100868 + L1MA4 LINE L1 3116 3803 -2340 1 1191 1437 275 66 12 chr3 79498914 79499491 -80100292 + L1MA4 LINE L1 5323 5930 -370 1 1191 561 326 30 64 chr3 79499750 79499986 -80099797 - Tigger5 DNA MER2_type -2169 237 10 1 1191 258 314 75 17 chr3 79500750 79500870 -80098913 - PB1 SINE Alu 0 127 1 1 1191 364 290 30 8 chr3 79501001 79501133 -80098650 + B1F SINE Alu 5 139 -10 2 1191 280 291 91 0 chr3 79502454 79502564 -80097219 + MIR SINE MIR 117 236 -26 3 1191 271 333 59 39 chr3 79503229 79503382 -80096401 + MIRb SINE MIR 112 267 -1 4 1191 407 247 165 35 chr3 79504857 79505083 -80094700 - MLT1C LTR MaLR -18 487 154 5 1191 229 283 0 16 chr3 79505169 79505230 -80094553 + MLT1B LTR MaLR 51 110 -280 6 1191 1181 88 7 0 chr3 79505897 79506044 -80093739 + B1_Mus1 SINE Alu 1 148 0 7 1191 1434 276 27 13 chr3 79506152 79506526 -80093257 - MTE2b LTR MaLR 0 379 1 8 1191 4494 250 88 91 chr3 79506528 79508110 -80091673 - MTE2b-int LTR MaLR -2 1578 1 8 1191 638 280 13 7 chr3 79508132 79508283 -80091500 - B3A SINE B2 -42 156 5 9 1191 743 291 56 151 chr3 79508287 79508704 -80091079 - MTE2b LTR MaLR 0 379 3 8 1191 280 290 0 0 chr3 79508711 79508773 -80091010 - B1_Mur4 SINE Alu -61 89 28 1 1191 180 111 0 0 chr3 79509088 79509115 -80090668 + (A)n Simple_repeat Simple_repeat 1 27 0 1 1191 278 269 30 0 chr3 79509294 79509361 -80090422 + B1F SINE Alu 80 148 -1 1 1191 323 301 0 0 chr3 79509887 79509960 -80089823 - ID4_ SINE ID -10 73 1 1 1191 243 0 0 0 chr3 79510056 79510083 -80089700 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 1191 2454 72 3 12 chr3 79510091 79510413 -80089370 + ORR1A2 LTR MaLR 1 319 -8 1 1191 5455 86 5 37 chr3 79511509 79512261 -80087522 - L1Md_F2 LINE L1 0 6582 5855 1 1191 633 247 115 16 chr3 79512792 79513035 -80086748 - L1MC1 LINE L1 -5 6328 6062 1 1191 574 258 63 46 chr3 79513072 79513247 -80086536 + B3A SINE B2 5 182 -16 1 1191 1616 154 0 48 chr3 79513530 79513802 -80085981 + RLTR41 LTR ERV1 188 446 0 1 1191 398 211 99 61 chr3 79514204 79514335 -80085448 - L1MC4 LINE L1 -133 7909 7774 2 1191 279 0 0 0 chr3 79514481 79514512 -80085271 + (TG)n Simple_repeat Simple_repeat 2 32 0 2 1191 407 269 222 7 chr3 79514514 79514649 -80085134 - RSINE1 SINE B4 0 165 2 2 1191 406 319 101 58 chr3 79514741 79515117 -80084666 - L1MD3 LINE L1 -1131 6864 6473 2 1191 231 260 12 38 chr3 79515457 79515537 -80084246 + MER34A LTR ERV1 53 130 -441 2 1191 886 86 50 14 chr3 79515655 79515796 -80083987 + ORR1C1 LTR MaLR 3 148 -230 2 1191 780 192 6 64 chr3 79516450 79516592 -80083191 + B1_Mur2 SINE Alu 3 141 -8 2 1191 1580 0 0 6 chr3 79516592 79516773 -80083010 + (CAAAG)n Simple_repeat Simple_repeat 1 180 0 2 1191 780 192 6 64 chr3 79516773 79516786 -80082997 + B1_Mur2 SINE Alu 142 149 0 2 1191 335 274 48 75 chr3 79517880 79517908 -80081875 - L1MB1 LINE L1 -319 5972 5950 2 1191 558 41 0 0 chr3 79517908 79517981 -80081802 + (TG)n Simple_repeat Simple_repeat 2 74 0 2 1191 613 264 182 33 chr3 79517981 79518478 -80081305 - L1MB1 LINE L1 -342 5949 5353 2 1191 303 184 0 0 chr3 79518500 79518587 -80081196 + CT-rich Low_complexity Low_complexity 1 87 0 3 1191 447 19 0 0 chr3 79518587 79518639 -80081144 + (CA)n Simple_repeat Simple_repeat 1 52 0 3 1191 503 192 14 15 chr3 79518656 79518763 -80081020 - PB1D9 SINE Alu -14 106 5 3 1191 753 114 0 0 chr3 79518771 79518885 -80080898 + (TTTC)n Simple_repeat Simple_repeat 2 115 0 3 1191 477 0 0 0 chr3 79518914 79518967 -80080816 + (TA)n Simple_repeat Simple_repeat 2 54 0 3 1191 778 274 35 22 chr3 79519388 79519619 -80080164 + MT2A LTR ERVL 155 388 -145 3 1191 1085 51 7 0 chr3 79519641 79519778 -80080005 - B1_Mus2 SINE Alu 0 147 10 3 1191 442 165 0 169 chr3 79519675 79519799 -80079984 - MT2B LTR ERVL -337 264 162 3 1191 351 234 242 61 chr3 79519772 79519904 -80079879 + MT2A LTR ERVL 378 533 0 3 1191 355 218 69 0 chr3 79519966 79520053 -80079730 + MER20 DNA MER1_type 65 157 -62 3 1191 305 286 164 40 chr3 79520238 79520464 -80079319 - ORR1E LTR MaLR -105 254 1 3 1191 874 158 223 0 chr3 79521154 79521338 -80078445 + URR1B DNA MER1_type 1 225 0 4 1191 2363 166 22 20 chr3 79521781 79521989 -80077794 + L1_Mur3 LINE L1 3648 3848 -2032 4 1191 1983 131 6 56 chr3 79521989 79522328 -80077455 + RLTRETN_Mm LTR ERVK 1 322 0 4 1191 2363 166 22 20 chr3 79522328 79522567 -80077216 + L1_Mur3 LINE L1 3849 4096 -1784 4 1191 486 0 0 0 chr3 79522567 79522621 -80077162 + (TC)n Simple_repeat Simple_repeat 1 54 0 4 1191 420 20 0 0 chr3 79522621 79522669 -80077114 + (CA)n Simple_repeat Simple_repeat 1 49 0 4 1191 1439 167 32 89 chr3 79522669 79522984 -80076799 + L1_Mur3 LINE L1 4636 4932 -948 4 1191 5768 207 45 22 chr3 79522967 79522987 -80076796 + Lx7 LINE L1 6234 6251 -1445 4 1191 594 28 0 0 chr3 79522987 79523059 -80076724 + (CA)n Simple_repeat Simple_repeat 1 72 0 4 1191 5768 207 47 26 chr3 79523059 79524307 -80075476 + Lx7 LINE L1 6252 7597 -99 4 1191 1250 54 7 0 chr3 79524307 79524445 -80075338 + B1_Mus1 SINE Alu 1 138 -10 4 1191 208 0 62 0 chr3 79524445 79524477 -80075306 + (CAAAC)n Simple_repeat Simple_repeat 2 35 0 4 1191 285 212 81 161 chr3 79524485 79524570 -80075213 + Lx7 LINE L1 7598 7692 -4 4 1191 2014 78 62 0 chr3 79524681 79524938 -80074845 - L1_Mus1 LINE L1 0 6567 6295 4 1191 236 286 0 20 chr3 79525855 79525905 -80073878 - ID4_ SINE ID -5 78 30 5 1191 1027 246 81 23 chr3 79525944 79526202 -80073581 + B4A SINE B4 2 274 -18 5 1191 893 152 20 7 chr3 79527275 79527421 -80072362 - B1_Mur4 SINE Alu -2 148 1 5 1191 195 296 108 42 chr3 79527646 79527766 -80072017 + L2 LINE L2 2750 2877 -542 5 1191 253 122 61 0 chr3 79528034 79528083 -80071700 + 5S rRNA rRNA 40 91 -30 5 1191 225 330 26 17 chr3 79528198 79528315 -80071468 + MTE2b LTR MaLR 3 120 -299 5 1191 258 225 48 36 chr3 79528334 79528417 -80071366 - Lx8 LINE L1 -8 7465 7382 5 1191 1149 241 44 27 chr3 79528438 79528736 -80071047 + MTE2b LTR MaLR 77 379 0 5 1191 951 169 111 59 chr3 79529193 79529314 -80070469 + ORR1D1 LTR MaLR 5 125 -249 5 1191 1415 204 52 131 chr3 79529314 79529720 -80070063 + ORR1D1 LTR MaLR 1 374 0 5 1191 951 185 133 52 chr3 79529720 79529912 -80069871 + ORR1D1 LTR MaLR 126 379 0 5 1191 605 282 72 81 chr3 79531650 79532009 -80067774 + ORR1E LTR MaLR 3 358 -1 5 1191 372 171 91 13 chr3 79532104 79532164 -80067619 + ORR1D1 LTR MaLR 1 66 -308 6 1191 4274 185 32 32 chr3 79532164 79533028 -80066755 + RMER13B LTR ERVK 1 864 -44 6 1191 290 128 0 0 chr3 79533036 79533083 -80066700 + ORR1D1 LTR MaLR 55 101 -273 6 1191 468 71 29 0 chr3 79533083 79533153 -80066630 + B1_Mus2 SINE Alu 76 147 0 6 1191 250 182 0 0 chr3 79533160 79533204 -80066579 + ORR1D1 LTR MaLR 87 130 -244 6 1191 414 0 0 0 chr3 79533483 79533529 -80066254 + (TG)n Simple_repeat Simple_repeat 1 46 0 6 1191 328 163 23 0 chr3 79534705 79534791 -80064992 + (TG)n Simple_repeat Simple_repeat 2 89 0 6 1191 411 21 0 0 chr3 79536845 79536893 -80062890 + (TG)n Simple_repeat Simple_repeat 1 48 0 6 1191 222 37 0 0 chr3 79537776 79537803 -80061980 + (GAAAA)n Simple_repeat Simple_repeat 3 29 0 6 1191 1254 21 7 20 chr3 79537803 79537950 -80061833 + B1_Mm SINE Alu 2 146 -1 6 1191 360 200 0 0 chr3 79537951 79538041 -80061742 + A-rich Low_complexity Low_complexity 1 90 0 6 1191 342 250 68 27 chr3 79538749 79538897 -80060886 - L1MC4a LINE L1 -1 7881 7728 6 1191 185 200 36 0 chr3 79539548 79539603 -80060180 + (CACAA)n Simple_repeat Simple_repeat 1 57 0 7 1191 973 181 0 0 chr3 79540085 79540229 -80059554 + B1_Mur4 SINE Alu 2 145 -5 7 1191 288 0 0 0 chr3 79540492 79540524 -80059259 + (TG)n Simple_repeat Simple_repeat 2 33 0 7 1191 21 36 0 0 chr3 79541070 79541098 -80058685 + AT_rich Low_complexity Low_complexity 1 28 0 7 1191 486 0 0 0 chr3 79541836 79541890 -80057893 + (TC)n Simple_repeat Simple_repeat 2 55 0 7 1191 226 309 74 67 chr3 79541892 79541971 -80057812 + RMER4B LTR ERVK 422 503 -82 7 1191 360 0 0 0 chr3 79541971 79542011 -80057772 + (CA)n Simple_repeat Simple_repeat 2 41 0 7 1191 226 309 74 67 chr3 79542011 79542066 -80057717 + RMER4B LTR ERVK 504 557 -28 7 1191 646 176 0 60 chr3 79543090 79543223 -80056560 + B1_Mus1 SINE Alu 3 127 -21 7 1191 1624 246 105 16 chr3 79543238 79543685 -80056098 + Lx8 LINE L1 6229 6715 -758 7 1191 228 271 17 0 chr3 79543818 79543877 -80055906 - MER20 DNA MER1_type -159 60 1 7 1191 775 185 13 33 chr3 79543918 79544069 -80055714 - B1_Mus1 SINE Alu 0 148 1 8 1191 378 57 0 0 chr3 79544159 79544212 -80055571 + (CA)n Simple_repeat Simple_repeat 2 54 0 8 1191 342 0 0 0 chr3 79545233 79545271 -80054512 + (TA)n Simple_repeat Simple_repeat 2 39 0 8 1191 237 250 19 0 chr3 79545470 79545522 -80054261 - RMER15 LTR ERVL -520 55 3 8 1191 381 263 40 20 chr3 79545604 79545705 -80054078 - PB1D10 SINE Alu -5 112 10 8 1191 604 333 38 95 chr3 79545917 79546285 -80053498 + ORR1E LTR MaLR 11 357 -2 8 1191 243 163 20 0 chr3 79546336 79546385 -80053398 + RMER1C Other Other 1289 1338 -4 8 1191 3254 289 104 30 chr3 79546403 79547437 -80052346 + ORR1E-int LTR MaLR 2 1107 -473 8 1191 831 109 0 0 chr3 79547437 79547575 -80052208 + (TAGA)n Simple_repeat Simple_repeat 2 139 0 8 1191 3254 289 104 30 chr3 79547575 79547725 -80052058 + ORR1E-int LTR MaLR 1108 1274 -306 8 1191 5344 226 58 15 chr3 79547769 79548965 -80050818 - Lx6 LINE L1 0 7460 6214 8 1191 899 310 91 36 chr3 79549804 79550279 -80049504 - RMER5 LTR ERV1 -1 533 33 8 1191 425 306 9 18 chr3 79550346 79550459 -80049324 - RSINE1 SINE B4 -22 143 32 9 1191 512 309 22 0 chr3 79551062 79551201 -80048582 + B1F SINE Alu 1 142 -7 9 1191 436 260 38 19 chr3 79553465 79553571 -80046212 - PB1D10 SINE Alu -9 108 1 9 1191 510 290 34 7 chr3 79553778 79553924 -80045859 + RSINE1 SINE B4 2 151 -14 9 1191 1508 265 21 11 chr3 79554114 79554488 -80045295 - Lx6 LINE L1 -27 7433 7056 9 1191 205 324 0 14 chr3 79554571 79554643 -80045140 + MER5A DNA MER1_type 119 189 0 9 1191 897 311 70 16 chr3 79555020 79555405 -80044378 - L1MA9 LINE L1 -153 6159 5754 9 1191 907 340 71 19 chr3 79555405 79555825 -80043958 + MER45B DNA Tip100 107 548 -492 9 1191 449 331 48 7 chr3 79555833 79555971 -80043812 + B4A SINE B4 92 235 -57 9 1191 988 224 2 22 chr3 79555971 79556182 -80043601 + B3 SINE B2 4 194 -1 9 1191 461 309 100 89 chr3 79556182 79556252 -80043531 + B4A SINE B4 4 287 -5 1 1191 1094 290 56 48 chr3 79556275 79556790 -80042993 + MER45B DNA Tip100 522 1040 0 9 1191 4009 118 8 2 chr3 79556871 79557471 -80042312 - L1_Mur2 LINE L1 -1247 4630 4027 1 1191 459 0 0 0 chr3 79557588 79557639 -80042144 + (CA)n Simple_repeat Simple_repeat 2 52 0 1 1191 311 0 26 0 chr3 79557640 79557679 -80042104 + (GA)n Simple_repeat Simple_repeat 2 41 0 1 1191 702 150 0 0 chr3 79557700 79557820 -80041963 + (CAGAGA)n Simple_repeat Simple_repeat 4 123 0 1 1191 634 252 20 43 chr3 79559023 79559273 -80040510 + MTEa LTR MaLR 133 379 0 1 1191 1310 269 99 40 chr3 79559273 79559746 -80040037 + MTEa-int LTR MaLR 1 501 -1079 1 1191 701 316 44 20 chr3 79559762 79560011 -80039772 + MTEa-int LTR MaLR 1096 1350 -230 1 1191 1104 204 122 26 chr3 79560027 79560143 -80039640 + ORR1D1 LTR MaLR 42 167 -207 1 1191 468 0 0 0 chr3 79560143 79560195 -80039588 + (TC)n Simple_repeat Simple_repeat 2 53 0 1 1191 234 62 0 0 chr3 79560195 79560226 -80039557 + (TG)n Simple_repeat Simple_repeat 1 32 0 1 1191 1104 204 122 26 chr3 79560226 79560410 -80039373 + ORR1D1 LTR MaLR 168 371 -3 1 1191 704 193 74 0 chr3 79560413 79560548 -80039235 + B1_Mur2 SINE Alu 5 149 0 1 1192 183 211 76 38 chr3 79561272 79561351 -80038432 - L3b LINE CR1 -326 156 75 1 1192 4173 32 14 0 chr3 79562770 79563262 -80036521 - L1Md_F2 LINE L1 0 6582 6084 1 1192 390 276 0 16 chr3 79563409 79563534 -80036249 + (TCTCTG)n Simple_repeat Simple_repeat 5 127 0 1 1192 4009 185 36 53 chr3 79563763 79564631 -80035152 - RMER13B LTR ERVK -55 853 1 1 1192 290 344 10 17 chr3 79564631 79564939 -80034844 + (CAGAGA)n Simple_repeat Simple_repeat 1 305 0 1 1192 447 266 78 59 chr3 79565134 79565420 -80034363 + MT2B LTR ERVL 15 420 -181 1 1192 387 0 0 0 chr3 79565432 79565475 -80034308 + (TCTA)n Simple_repeat Simple_repeat 4 46 0 1 1192 471 160 0 0 chr3 79565475 79565569 -80034214 + (TA)n Simple_repeat Simple_repeat 2 95 0 1 1192 245 100 0 48 chr3 79565584 79565626 -80034157 + MT2B LTR ERVL 535 574 -10 1 1192 914 289 93 28 chr3 79565916 79566237 -80033546 - ORR1E LTR MaLR 0 359 18 1 1192 2975 71 24 7 chr3 79566248 79566673 -80033110 - MT2C_Mm LTR ERVL -43 432 1 1 1192 2959 110 64 13 chr3 79566673 79567024 -80032759 - Lx2 LINE L1 -918 6079 5703 1 1192 264 30 0 0 chr3 79567024 79567057 -80032726 + (TTTTG)n Simple_repeat Simple_repeat 3 35 0 1 1192 2959 139 42 12 chr3 79567057 79567269 -80032514 - Lx2 LINE L1 -181 5702 5494 1 1192 2409 81 6 0 chr3 79567299 79567646 -80032137 - MusHAL1 LINE L1 -1813 899 551 1 1192 39933 33 0 0 chr3 79567659 79573071 -80026712 - L1Md_T LINE L1 -1 6581 1170 1 1192 5752 184 15 21 chr3 79573077 79574798 -80024985 - L1Md_T LINE L1 -5411 1205 99 1 1192 809 192 9 118 chr3 79574816 79574905 -80024878 - ORR1E-int LTR MaLR -25 1345 1289 1 1192 1741 81 65 4 chr3 79574905 79575153 -80024630 + Lx3A LINE L1 6715 6977 -4 1 1192 809 172 0 119 chr3 79575153 79575312 -80024471 - ORR1E-int LTR MaLR -82 1288 1154 1 1192 1174 294 102 42 chr3 79575360 79575888 -80023895 - ORR1E-int LTR MaLR -723 647 88 1 1192 347 260 24 121 chr3 79575914 79575926 -80023857 - ORR1E LTR MaLR 0 379 368 1 1192 1958 172 50 3 chr3 79575926 79576287 -80023496 - ORR1C1 LTR MaLR 0 378 1 1 1192 4835 219 65 48 chr3 79576292 79577639 -80022144 - ORR1C1-int LTR MaLR 0 1370 1 1 1192 2028 175 35 5 chr3 79577639 79578006 -80021777 - ORR1C1 LTR MaLR 0 378 1 1 1192 948 239 77 88 chr3 79578006 79578359 -80021424 - ORR1E LTR MaLR -12 367 4 1 1192 309 26 0 0 chr3 79578416 79578454 -80021329 + (CA)n Simple_repeat Simple_repeat 2 39 0 1 1192 23 0 0 0 chr3 79579124 79579147 -80020636 + AT_rich Low_complexity Low_complexity 1 23 0 1 1192 237 333 18 64 chr3 79580970 79581079 -80018704 + ORR1E LTR MaLR 1 104 -255 1 1192 2256 253 69 31 chr3 79581099 79581899 -80017884 - L1_Mur3 LINE L1 -1408 4472 3643 1 1192 1805 158 206 3 chr3 79581926 79582276 -80017507 - MTC LTR MaLR 0 421 1 1 1192 598 159 53 41 chr3 79582276 79582446 -80017337 - MTC-int LTR MaLR 0 1258 1087 1 1192 5205 12 0 0 chr3 79582446 79583028 -80016755 + L1Md_A LINE L1 5005 5586 -297 1 1192 8980 13 1 0 chr3 79583028 79584023 -80015760 + L1Md_A LINE L1 5587 6582 0 1 1192 2325 160 38 11 chr3 79584023 79584472 -80015311 - MTC-int LTR MaLR -145 1113 653 1 1192 995 175 36 10 chr3 79584486 79584682 -80015101 - MTC LTR MaLR -220 201 1 1 1192 269 264 48 48 chr3 79584695 79584842 -80014941 - L1_Rod LINE L1 -6470 702 556 1 1192 238 266 25 25 chr3 79585894 79585975 -80013808 + ID4_ SINE ID 1 81 -2 1 1192 243 0 0 0 chr3 79586513 79586540 -80013243 + (T)n Simple_repeat Simple_repeat 1 27 0 1 1192 758 232 0 0 chr3 79586879 79587021 -80012762 + B1_Mur3 SINE Alu 1 142 -7 1 1192 208 151 37 19 chr3 79587501 79587555 -80012228 + T-rich Low_complexity Low_complexity 2 56 0 1 1192 739 184 30 101 chr3 79588487 79588686 -80011097 - RMER10B LTR ERVL -6 392 208 1 1192 904 182 85 17 chr3 79588705 79588940 -80010843 - RMER10B LTR ERVL -147 251 1 1 1192 441 0 0 0 chr3 79589079 79589128 -80010655 + (TTA)n Simple_repeat Simple_repeat 1 49 0 1 1192 260 278 28 0 chr3 79589581 79589653 -80010130 - ID4 SINE ID -2 81 8 1 1192 291 264 27 14 chr3 79589717 79589790 -80009993 - PB1D10 SINE Alu -43 74 1 1 1192 392 213 69 0 chr3 79590104 79590239 -80009544 + ORR1E LTR MaLR 32 188 -186 1 1192 617 180 6 0 chr3 79590582 79590749 -80009034 + GA-rich Low_complexity Low_complexity 1 168 0 1 1192 248 130 22 0 chr3 79590763 79590809 -80008974 + G-rich Low_complexity Low_complexity 2 48 0 1 1192 883 209 44 19 chr3 79591177 79591382 -80008401 - B3 SINE B2 -6 210 1 1 1192 450 0 0 0 chr3 79591499 79591549 -80008234 + (CA)n Simple_repeat Simple_repeat 2 51 0 1 1192 703 221 70 25 chr3 79592025 79592102 -80007681 - B3 SINE B2 -4 212 127 1 1192 509 0 16 0 chr3 79592102 79592163 -80007620 + (TG)n Simple_repeat Simple_repeat 2 63 0 1 1192 703 221 70 25 chr3 79592163 79592285 -80007498 - B3 SINE B2 -90 126 4 1 1192 303 28 0 0 chr3 79592373 79592409 -80007374 + (TTTG)n Simple_repeat Simple_repeat 3 38 0 1 1192 222 262 33 0 chr3 79592813 79592874 -80006909 + CT-rich Low_complexity Low_complexity 3 65 0 1 1192 352 190 0 71 chr3 79592877 79592962 -80006821 - PB1D10 SINE Alu -16 101 23 1 1192 360 243 120 75 chr3 79593114 79593314 -80006469 + MER106A DNA MER1_type 27 235 -1 1 1192 212 184 20 0 chr3 79593400 79593449 -80006334 + CT-rich Low_complexity Low_complexity 2 51 0 1 1192 686 12 0 12 chr3 79594787 79594871 -80004912 + (TCCC)n Simple_repeat Simple_repeat 3 85 0 1 1192 903 51 0 0 chr3 79595477 79595594 -80004189 + (GA)n Simple_repeat Simple_repeat 2 118 0 1 1192 3598 217 65 62 chr3 79595637 79596852 -80002931 - RMER1B Other Other -1 1065 65 1 1192 707 295 52 0 chr3 79596970 79597163 -80002620 + B3 SINE B2 3 205 -11 1 1192 1416 226 31 91 chr3 79598177 79598595 -80001188 - MTD LTR MaLR 0 419 27 1 1192 218 56 28 0 chr3 79598595 79598631 -80001152 + (CAAA)n Simple_repeat Simple_repeat 4 40 0 1 1192 861 252 12 16 chr3 79599060 79599302 -80000481 + L1_Mur3 LINE L1 914 1154 -6558 1 1192 594 130 148 0 chr3 79600022 79600130 -79999653 - URR1B DNA MER1_type -2 223 100 1 1192 226 248 172 23 chr3 79600130 79600142 -79999641 + CYRA11_Mm Unknown Y-chromosome 216 312 -305 1 1192 327 96 0 0 chr3 79600209 79600261 -79999522 + (CAAT)n Simple_repeat Simple_repeat 4 55 0 1 1192 582 214 33 164 chr3 79600439 79600774 -79999009 + RLTR19-int LTR ERVK 3455 3745 -2392 1 1192 410 275 174 50 chr3 79601032 79601250 -79998533 + RLTR19-int LTR ERVK 3865 4109 -2028 1 1192 371 277 8 70 chr3 79602159 79602287 -79997496 + MTEa LTR MaLR 230 349 -30 1 1192 1880 154 97 11 chr3 79602463 79602812 -79996971 - RLTR30 LTR ERV1 0 379 1 1 1192 228 278 83 0 chr3 79604068 79604140 -79995643 + L1MC4 LINE L1 7339 7416 -626 1 1192 30995 112 38 30 chr3 79604515 79609494 -79990289 + L1_Mus1 LINE L1 277 5355 -528 1 1192 5439 44 5 6 chr3 79609494 79610159 -79989624 + L1Md_F2 LINE L1 5919 6582 0 1 1192 30995 60 8 1 chr3 79610159 79611378 -79988405 + L1_Mus1 LINE L1 5356 6567 0 1 1192 396 0 0 0 chr3 79612026 79612070 -79987713 + (CAAAA)n Simple_repeat Simple_repeat 4 47 0 1 1192 189 0 0 0 chr3 79613661 79613682 -79986101 + (TTTA)n Simple_repeat Simple_repeat 1 21 0 1 1192 1209 104 40 0 chr3 79613685 79613858 -79985925 - B2_Mm2 SINE B2 -14 181 2 1 1192 602 234 225 12 chr3 79613866 79614035 -79985748 - B3 SINE B2 -11 205 1 1 1192 317 253 11 44 chr3 79614301 79614392 -79985391 - RSINE1 SINE B4 -74 91 4 1 1192 748 146 138 0 chr3 79615312 79615442 -79984341 - B1_Mur4 SINE Alu 0 150 3 1 1192 21 0 0 0 chr3 79617617 79617638 -79982145 + AT_rich Low_complexity Low_complexity 1 21 0 1 1192 180 0 0 0 chr3 79618199 79618219 -79981564 + (TCTCTG)n Simple_repeat Simple_repeat 3 22 0 1 1192 285 128 0 0 chr3 79618216 79618263 -79981520 + (TCCC)n Simple_repeat Simple_repeat 3 49 0 1 1192 1445 180 11 7 chr3 79618263 79618543 -79981240 + ORR1B2 LTR MaLR 86 366 -1 1 1192 638 226 104 0 chr3 79619277 79619441 -79980342 - B4 SINE B4 -105 187 7 1 1192 783 219 37 16 chr3 79620286 79620476 -79979307 + B3A SINE B2 1 194 -4 1 1192 873 140 0 28 chr3 79621172 79621348 -79978435 + CT-rich Low_complexity Low_complexity 2 172 0 1 1192 244 341 73 8 chr3 79621465 79621589 -79978194 + ID_B1 SINE B4 85 216 -8 1 1192 222 37 0 0 chr3 79621966 79621993 -79977790 + (TG)n Simple_repeat Simple_repeat 2 28 0 1 1192 1038 102 0 0 chr3 79622786 79623095 -79976688 + (GA)n Simple_repeat Simple_repeat 1 309 0 1 1192 522 43 0 0 chr3 79623095 79623164 -79976619 + (CA)n Simple_repeat Simple_repeat 2 70 0 1 1192 765 115 0 0 chr3 79623164 79623179 -79976604 + (GA)n Simple_repeat Simple_repeat 2 16 0 1 1192 1040 100 0 0 chr3 79623488 79623628 -79976155 + B1_Mus1 SINE Alu 1 140 -8 1 1192 379 277 35 26 chr3 79623834 79623949 -79975834 + PB1D10 SINE Alu 1 116 -1 1 1192 391 274 82 41 chr3 79624114 79624285 -79975498 + B3A SINE B2 5 182 -16 1 1192 439 222 13 19 chr3 79624340 79624496 -79975287 + (TA)n Simple_repeat Simple_repeat 2 156 0 1 1192 188 259 158 12 chr3 79624648 79624730 -79975053 + MIRc SINE MIR 60 153 -115 1 1192 1136 62 0 14 chr3 79625446 79625592 -79974191 + B1_Mus2 SINE Alu 2 145 -2 1 1192 375 113 0 0 chr3 79626287 79626358 -79973425 + (TCTA)n Simple_repeat Simple_repeat 4 74 0 1 1192 195 42 0 0 chr3 79626406 79626430 -79973353 + (TC)n Simple_repeat Simple_repeat 2 25 0 1 1192 281 283 41 33 chr3 79628700 79628839 -79970944 - L1M5 LINE L1 -427 5762 5622 1 1192 204 40 0 0 chr3 79631167 79631192 -79968591 + (TTTA)n Simple_repeat Simple_repeat 3 27 0 1 1192 446 244 92 0 chr3 79632077 79632196 -79967587 + B1F SINE Alu 20 149 0 1 1192 678 136 0 0 chr3 79632538 79632656 -79967127 + (CAGG)n Simple_repeat Simple_repeat 1 118 0 1 1192 283 259 0 0 chr3 79633051 79633109 -79966674 + RSINE1 SINE B4 108 165 0 2 1192 686 23 11 0 chr3 79633114 79633202 -79966581 + (CA)n Simple_repeat Simple_repeat 2 90 0 2 1192 441 0 0 0 chr3 79633202 79633250 -79966533 + (GA)n Simple_repeat Simple_repeat 2 50 0 2 1192 187 363 48 0 chr3 79633943 79634067 -79965716 - MIR SINE MIR -72 190 61 2 1192 499 329 152 44 chr3 79634794 79635294 -79964489 + Tigger7 DNA MER2_type 45 598 -1893 2 1192 842 212 119 0 chr3 79635728 79635921 -79963862 + B3 SINE B2 1 216 0 2 1192 231 310 123 8 chr3 79636114 79636244 -79963539 + MIR SINE MIR 12 156 -106 2 1192 246 169 215 0 chr3 79636252 79636317 -79963466 + PB1D10 SINE Alu 10 88 -29 2 1192 629 172 8 25 chr3 79636316 79636435 -79963348 + B1_Mur1 SINE Alu 33 149 0 2 1192 332 169 0 13 chr3 79636450 79636528 -79963255 + (CAACC)n Simple_repeat Simple_repeat 2 78 0 2 1192 291 261 14 0 chr3 79636569 79636638 -79963145 - ID4 SINE ID -12 71 2 2 1192 292 252 18 53 chr3 79637063 79637176 -79962607 + MER3 DNA MER1_type 100 208 -1 2 1192 792 169 7 22 chr3 79637319 79637458 -79962325 - B1_Mus1 SINE Alu -11 137 1 2 1192 289 306 45 0 chr3 79638165 79638276 -79961507 - PB1 SINE Alu -11 116 1 2 1192 368 226 24 12 chr3 79638732 79638817 -79960966 + B1_Mur1 SINE Alu 62 147 -2 2 1192 468 269 0 0 chr3 79638851 79638955 -79960828 + U6 snRNA snRNA 2 105 -2 2 1192 387 0 0 0 chr3 79638974 79639017 -79960766 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 2 1192 247 234 25 25 chr3 79639057 79639136 -79960647 + PB1D10 SINE Alu 38 116 -1 2 1192 1142 88 0 0 chr3 79639604 79639751 -79960032 - B1_Mus1 SINE Alu 0 148 2 2 1192 215 73 49 0 chr3 79641226 79641267 -79958516 + (CAGA)n Simple_repeat Simple_repeat 4 46 0 2 1192 1674 224 52 44 chr3 79641273 79641796 -79957987 + RLTR11A2 LTR ERVK 1 527 0 2 1192 434 355 71 55 chr3 79642104 79642524 -79957259 - Tigger9b DNA MER2_type -8 616 190 2 1192 240 322 57 85 chr3 79642523 79642771 -79957012 - Tigger9b DNA MER2_type -381 243 3 2 1192 4727 86 5 2 chr3 79643407 79644037 -79955746 - L1Md_F2 LINE L1 -12 6570 5939 2 1192 1737 55 339 0 chr3 79644037 79644320 -79955463 + L1Md_F2 LINE L1 5573 5951 -615 2 1192 259 270 16 0 chr3 79644676 79644739 -79955044 + tRNA-Ala-GCY_ tRNA tRNA 4 67 -8 2 1192 238 391 39 0 chr3 79644982 79645110 -79954673 - MER3 DNA MER1_type -76 133 1 2 1192 569 188 17 17 chr3 79645885 79646004 -79953779 + B1F2 SINE Alu 29 147 -2 2 1192 288 0 0 0 chr3 79646021 79646053 -79953730 + (TTA)n Simple_repeat Simple_repeat 3 34 0 2 1192 320 206 9 126 chr3 79647181 79647292 -79952491 - PB1 SINE Alu -9 118 21 2 1192 873 175 0 14 chr3 79647659 79647800 -79951983 + (TG)n Simple_repeat Simple_repeat 1 138 0 2 1192 543 56 0 0 chr3 79647800 79647871 -79951912 + (TC)n Simple_repeat Simple_repeat 2 72 0 2 1192 873 122 0 53 chr3 79647871 79648022 -79951761 + (TG)n Simple_repeat Simple_repeat 1 145 0 2 1192 1259 196 132 4 chr3 79648496 79648768 -79951015 - Lx6 LINE L1 -328 7132 6826 2 1192 500 290 43 11 chr3 79648774 79648962 -79950821 + Tigger1 DNA MER2_type 2223 2416 -2 2 1192 22 0 0 0 chr3 79649359 79649381 -79950402 + AT_rich Low_complexity Low_complexity 1 22 0 2 1192 25 0 0 0 chr3 79650311 79650336 -79949447 + AT_rich Low_complexity Low_complexity 1 25 0 2 1192 676 103 17 0 chr3 79650462 79650578 -79949205 + (TC)n Simple_repeat Simple_repeat 1 118 0 2 1192 286 272 33 0 chr3 79650771 79650863 -79948920 - L1MA4 LINE L1 -373 5927 5833 2 1192 352 261 104 0 chr3 79650957 79651072 -79948711 + L1MCa LINE L1 4 130 -6378 2 1192 228 128 0 0 chr3 79651309 79651343 -79948440 + (A)n Simple_repeat Simple_repeat 1 34 0 2 1192 1189 68 0 0 chr3 79651343 79651490 -79948293 + B1_Mus2 SINE Alu 1 147 0 2 1192 334 271 103 22 chr3 79651494 79651630 -79948153 + L1MCa LINE L1 1632 1778 -4730 2 1192 236 306 12 1 chr3 79651851 79651933 -79947850 - PB1D10 SINE Alu -20 100 18 2 1192 396 309 156 33 chr3 79652000 79652709 -79947074 + L1MCa LINE L1 2057 2966 -3355 2 1192 244 208 0 0 chr3 79653305 79653353 -79946430 + T-rich Low_complexity Low_complexity 2 49 0 2 1192 751 85 8 8 chr3 79653401 79653519 -79946264 + (TTCC)n Simple_repeat Simple_repeat 3 120 0 2 1192 745 171 101 0 chr3 79653571 79653700 -79946083 - B1_Mur4 SINE Alu -7 143 2 2 1192 324 0 0 0 chr3 79655181 79655217 -79944566 + (GA)n Simple_repeat Simple_repeat 1 36 0 2 1192 220 303 29 57 chr3 79655338 79655408 -79944375 - ID4 SINE ID -14 69 2 2 1192 340 258 50 0 chr3 79655413 79655520 -79944263 - B1F2 SINE Alu -5 112 1 2 1192 215 367 58 0 chr3 79655550 79655619 -79944164 - L2a LINE L2 -4 3422 3347 2 1192 187 54 26 26 chr3 79655619 79655657 -79944126 + (CAA)n Simple_repeat Simple_repeat 2 39 0 2 1192 215 367 58 0 chr3 79655657 79655707 -79944076 - L2a LINE L2 -80 3346 3297 2 1192 2513 138 9 80 chr3 79655732 79656195 -79943588 - RLTR23 LTR ERV1 0 430 1 2 1192 24 0 0 0 chr3 79656484 79656508 -79943275 + AT_rich Low_complexity Low_complexity 1 24 0 2 1192 471 281 149 14 chr3 79656608 79656890 -79942893 - MLT1F LTR MaLR -225 323 4 2 1192 507 33 0 0 chr3 79657271 79657332 -79942451 + (TA)n Simple_repeat Simple_repeat 1 61 0 2 1192 262 329 122 18 chr3 79657492 79657656 -79942127 + B4A SINE B4 3 183 -109 2 1192 1107 94 0 0 chr3 79657736 79657916 -79941867 + (CA)n Simple_repeat Simple_repeat 1 180 0 2 1192 433 291 112 34 chr3 79658144 79658350 -79941433 - LTR65 LTR ERV1 -231 438 217 2 1192 198 0 0 0 chr3 79658730 79658752 -79941031 + (CAAAA)n Simple_repeat Simple_repeat 4 25 0 2 1192 306 0 0 0 chr3 79659531 79659565 -79940218 + (GA)n Simple_repeat Simple_repeat 1 34 0 2 1192 2591 280 77 29 chr3 79659739 79660833 -79938950 + RMER1C Other Other 420 1342 0 2 1192 22 0 0 0 chr3 79661008 79661030 -79938753 + AT_rich Low_complexity Low_complexity 1 22 0 2 1192 1074 38 0 0 chr3 79661123 79661254 -79938529 + (TTTCC)n Simple_repeat Simple_repeat 5 135 0 2 1192 393 58 0 0 chr3 79661254 79661306 -79938477 + (TCCC)n Simple_repeat Simple_repeat 4 55 0 2 1192 215 274 0 31 chr3 79661306 79661320 -79938463 + polypyrimidine Low_complexity Low_complexity 50 63 0 2 1192 1113 107 0 0 chr3 79661320 79661469 -79938314 - B1_Mur4 SINE Alu 0 150 2 2 1192 215 274 0 31 chr3 79661469 79661518 -79938265 + polypyrimidine Low_complexity Low_complexity 2 49 0 2 1192 584 198 83 31 chr3 79661536 79661729 -79938054 - Lx9 LINE L1 -8 7636 7434 2 1192 237 337 34 17 chr3 79662427 79662602 -79937181 + L2 LINE L2 2057 2234 -1185 2 1192 755 143 39 0 chr3 79662782 79663066 -79936717 + CT-rich Low_complexity Low_complexity 1 295 0 2 1192 650 236 14 7 chr3 79663067 79663212 -79936571 - B1_Mur1 SINE Alu 0 149 4 2 1192 1284 227 84 113 chr3 79663237 79663748 -79936035 - Lx7 LINE L1 0 7696 7201 2 1192 2272 179 17 7 chr3 79663884 79664301 -79935482 + MTC LTR MaLR 1 421 0 2 1192 23 0 0 0 chr3 79664632 79664655 -79935128 + AT_rich Low_complexity Low_complexity 1 23 0 2 1192 930 201 47 38 chr3 79665079 79665291 -79934492 - B3 SINE B2 -2 214 1 2 1192 320 200 0 175 chr3 79666068 79666171 -79933612 - RSINE1 SINE B4 -2 163 79 2 1192 3126 273 82 24 chr3 79666860 79667936 -79931847 - Lx8 LINE L1 -3 7470 6333 2 1192 21 0 0 0 chr3 79669241 79669262 -79930521 + AT_rich Low_complexity Low_complexity 1 21 0 2 1192 289 296 172 10 chr3 79669918 79670017 -79929766 - B1F SINE Alu -32 117 3 2 1192 971 245 5 5 chr3 79671934 79672143 -79927640 + B3 SINE B2 2 210 -6 2 1192 859 9 19 0 chr3 79672149 79672257 -79927526 + (GA)n Simple_repeat Simple_repeat 1 110 0 2 1192 639 88 0 0 chr3 79672517 79672608 -79927175 + (TG)n Simple_repeat Simple_repeat 2 92 0 2 1192 289 277 51 64 chr3 79672777 79673012 -79926771 + Arthur1B DNA Tip100 875 1106 -119 2 1192 27 0 0 0 chr3 79673181 79673208 -79926575 + AT_rich Low_complexity Low_complexity 1 27 0 2 1192 393 245 20 80 chr3 79673261 79673412 -79926371 - MLT1B LTR MaLR -8 382 241 2 1192 2481 156 37 5 chr3 79673677 79674083 -79925700 + MTC LTR MaLR 1 419 -2 2 1192 491 284 16 0 chr3 79674084 79674211 -79925572 - B1F SINE Alu -19 130 2 2 1192 580 185 104 37 chr3 79674542 79674677 -79925106 - B1_Mm SINE Alu -1 146 3 2 1192 752 148 0 23 chr3 79676693 79676824 -79922959 - B1_Mur3 SINE Alu -21 128 1 2 1192 265 248 0 23 chr3 79676715 79676843 -79922940 - ORR1B1-int LTR MaLR -755 754 630 2 1192 21 0 0 0 chr3 79677091 79677112 -79922671 + AT_rich Low_complexity Low_complexity 1 21 0 2 1192 1836 132 77 12 chr3 79678168 79678505 -79921278 - ORR1B2 LTR MaLR -8 359 1 2 1192 194 98 78 0 chr3 79678963 79679014 -79920769 + (TTAA)n Simple_repeat Simple_repeat 4 58 0 2 1192 1906 190 60 12 chr3 79679304 79679704 -79920079 - MTD LTR MaLR 0 419 1 2 1192 26 30 0 0 chr3 79679901 79679934 -79919849 + AT_rich Low_complexity Low_complexity 1 33 0 2 1192 391 257 55 9 chr3 79680073 79680183 -79919600 + B3 SINE B2 2 116 -100 2 1192 871 257 28 5 chr3 79680280 79680491 -79919292 - B4A SINE B4 -36 256 41 2 1192 259 269 123 29 chr3 79680942 79681080 -79918703 - MIRb SINE MIR -38 230 80 2 1192 216 348 0 0 chr3 79682079 79682171 -79917612 - MER5A DNA MER1_type -76 113 22 2 1192 1111 224 160 3 chr3 79682282 79682626 -79917157 - MTD LTR MaLR 0 419 22 2 1192 297 0 0 0 chr3 79682628 79682661 -79917122 + (CAA)n Simple_repeat Simple_repeat 1 33 0 2 1192 548 223 189 31 chr3 79682803 79683062 -79916721 + RLTR28B LTR ERVL 17 316 -165 2 1192 228 186 0 23 chr3 79683104 79683148 -79916635 + (CTG)n Simple_repeat Simple_repeat 2 44 0 3 1192 361 191 11 45 chr3 79683156 79683244 -79916539 + RLTR28B LTR ERVL 435 519 -5 2 1192 307 384 56 36 chr3 79683261 79683564 -79916219 - LTR88a LTR Gypsy -27 789 481 3 1192 256 379 68 37 chr3 79683288 79683611 -79916172 - LTR88b LTR Gypsy? -54 783 451 3 1192 724 209 82 53 chr3 79684388 79684535 -79915248 + B3 SINE B2 4 162 -54 3 1192 414 0 0 0 chr3 79684535 79684581 -79915202 + (CA)n Simple_repeat Simple_repeat 2 47 0 3 1192 724 209 82 53 chr3 79684581 79684640 -79915143 + B3 SINE B2 163 216 0 3 1192 692 222 7 0 chr3 79684785 79684920 -79914863 - B1_Mur2 SINE Alu -10 139 4 3 1192 296 260 0 27 chr3 79685456 79685531 -79914252 + PB1D7 SINE Alu 12 84 -36 3 1192 378 0 0 0 chr3 79686544 79686586 -79913197 + (TG)n Simple_repeat Simple_repeat 2 43 0 3 1192 318 241 132 0 chr3 79686590 79686673 -79913110 - PB1D10 SINE Alu -9 108 15 3 1192 212 372 13 13 chr3 79687538 79687617 -79912166 - ID4 SINE ID -3 80 2 3 1192 1134 69 14 0 chr3 79687703 79687847 -79911936 + B1_Mus2 SINE Alu 1 146 -1 3 1192 29 0 0 0 chr3 79688887 79688916 -79910867 + AT_rich Low_complexity Low_complexity 1 29 0 3 1192 189 180 0 0 chr3 79689205 79689255 -79910528 + A-rich Low_complexity Low_complexity 1 50 0 3 1192 342 0 0 0 chr3 79689327 79689365 -79910418 + (TG)n Simple_repeat Simple_repeat 1 38 0 3 1192 414 0 0 0 chr3 79689365 79689410 -79910373 + (GA)n Simple_repeat Simple_repeat 1 46 0 3 1192 524 232 199 22 chr3 79691470 79691523 -79908260 + B3 SINE B2 1 50 -166 3 1192 363 60 0 0 chr3 79691523 79691573 -79908210 + (CA)n Simple_repeat Simple_repeat 1 50 0 3 1192 524 232 199 22 chr3 79691573 79691700 -79908083 + B3 SINE B2 51 213 -3 3 1193 8098 58 6 4 chr3 79693698 79694855 -79904928 - L1_Mus1 LINE L1 0 6567 5402 3 1193 4400 137 32 5 chr3 79694851 79696149 -79903634 - L1Md_F LINE L1 -4162 1721 387 3 1193 3469 28 2 0 chr3 79696362 79696757 -79903026 - MTA_Mm LTR MaLR 0 396 1 3 1193 9751 19 0 0 chr3 79696757 79697855 -79901928 - MTA_Mm-int LTR MaLR 0 1098 1 3 1193 3487 25 2 0 chr3 79697855 79698250 -79901533 - MTA_Mm LTR MaLR 0 396 1 3 1193 481 250 14 81 chr3 79698626 79698774 -79901009 - Tigger5 DNA MER2_type -65 2341 2204 3 1193 674 280 122 74 chr3 79698786 79699056 -79900727 - Tigger5 DNA MER2_type -2098 308 26 3 1193 612 262 57 17 chr3 79699147 79699322 -79900461 - B3A SINE B2 -15 183 2 3 1193 193 353 18 64 chr3 79700541 79700650 -79899133 - MIRc SINE MIR -119 149 46 3 1193 297 0 0 0 chr3 79700775 79700808 -79898975 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 3 1193 26 0 0 0 chr3 79701082 79701108 -79898675 + AT_rich Low_complexity Low_complexity 1 26 0 3 1193 623 273 19 7 chr3 79701165 79701320 -79898463 + RSINE1 SINE B4 1 157 -8 3 1193 207 100 0 0 chr3 79701321 79701351 -79898432 + (TGAG)n Simple_repeat Simple_repeat 2 31 0 3 1193 620 59 12 0 chr3 79701370 79701455 -79898328 + (TAGA)n Simple_repeat Simple_repeat 3 88 0 3 1193 231 374 0 0 chr3 79702453 79702568 -79897215 - L2a LINE L2 -4 3422 3308 3 1193 21 36 0 0 chr3 79702987 79703015 -79896768 + AT_rich Low_complexity Low_complexity 1 28 0 3 1193 324 0 0 0 chr3 79703248 79703284 -79896499 + (TTTA)n Simple_repeat Simple_repeat 1 36 0 3 1193 351 274 111 0 chr3 79703992 79704109 -79895674 - RSINE1 SINE B4 -33 132 3 3 1193 842 128 50 0 chr3 79704589 79704730 -79895053 - B1_Mur2 SINE Alu 0 149 2 3 1193 378 288 73 86 chr3 79704997 79705230 -79894553 - L1MA9 LINE L1 0 6291 6063 3 1193 306 200 0 0 chr3 79705469 79705529 -79894254 - B4A SINE B4 -230 62 3 3 1193 645 298 136 26 chr3 79705551 79706055 -79893728 - L1MA9 LINE L1 -244 6047 5476 3 1193 1208 61 0 0 chr3 79706055 79706202 -79893581 - B1_Mus1 SINE Alu 0 148 2 3 1193 645 299 162 15 chr3 79706202 79706257 -79893526 - L1MA9 LINE L1 -837 5475 5420 3 1193 942 143 96 9 chr3 79706511 79706729 -79893054 + Lx9 LINE L1 7407 7643 -1 3 1193 231 36 0 0 chr3 79706759 79706787 -79892996 + (CA)n Simple_repeat Simple_repeat 2 29 0 3 1193 279 181 47 0 chr3 79706807 79706934 -79892849 + (CAGA)n Simple_repeat Simple_repeat 2 134 0 3 1193 470 203 0 7 chr3 79706953 79707107 -79892676 + GA-rich Low_complexity Low_complexity 2 154 0 3 1193 630 284 36 16 chr3 79707345 79707538 -79892245 - B3A SINE B2 0 198 2 3 1193 226 295 48 60 chr3 79708902 79708985 -79890798 + B1F SINE Alu 15 96 -21 3 1193 677 205 23 2 chr3 79709016 79709148 -79890635 + B1_Mur1 SINE Alu 5 138 -11 3 1193 498 17 0 0 chr3 79709148 79709207 -79890576 + (CCAA)n Simple_repeat Simple_repeat 2 60 0 3 1193 634 224 7 59 chr3 79709207 79709226 -79890557 + B1_Mus1 SINE Alu 137 148 0 3 1193 356 318 98 41 chr3 79709270 79709536 -79890247 + Cheshire DNA MER1_type 6 286 -2134 3 1193 204 370 18 25 chr3 79709699 79709843 -79889940 + L2b LINE L2 3257 3405 -21 3 1193 289 286 18 18 chr3 79710083 79710197 -79889586 + L1MA5A LINE L1 6074 6187 -110 3 1193 241 379 70 30 chr3 79713351 79713650 -79886133 - LTR40b LTR ERVL -32 430 120 3 1193 315 0 0 0 chr3 79714083 79714118 -79885665 + (CA)n Simple_repeat Simple_repeat 1 35 0 3 1193 212 269 15 15 chr3 79714844 79714912 -79884871 - MIR SINE MIR -110 152 85 3 1193 716 254 73 33 chr3 79715487 79715589 -79884194 + RLTR15 LTR ERVK 1 113 -246 3 1193 351 0 0 0 chr3 79715589 79715628 -79884155 + (GA)n Simple_repeat Simple_repeat 2 40 0 3 1193 716 254 73 33 chr3 79715628 79715855 -79883928 + RLTR15 LTR ERVK 114 343 -16 3 1193 204 125 0 0 chr3 79715861 79715893 -79883890 + (CATATA)n Simple_repeat Simple_repeat 5 36 0 3 1193 295 271 108 43 chr3 79716564 79716703 -79883080 - RMER15 LTR ERVL -92 483 336 3 1193 653 324 44 8 chr3 79716808 79717060 -79882723 - RMER15 LTR ERVL -16 559 299 3 1193 267 311 20 96 chr3 79717204 79717350 -79882433 - Lx6 LINE L1 -425 7035 6901 3 1193 769 230 84 50 chr3 79717350 79717611 -79882172 - RMER15-int LTR ERVL -130 4869 4600 3 1193 444 310 18 37 chr3 79717661 79717825 -79881958 - RMER15-int LTR ERVL -479 4520 4360 3 1193 593 264 228 4 chr3 79718454 79718709 -79881074 + MTD LTR MaLR 88 399 -20 3 1193 273 284 30 0 chr3 79718724 79718791 -79880992 - Lx8 LINE L1 -1184 6289 6221 3 1193 945 309 107 72 chr3 79718904 79719333 -79880450 - RMER15-int LTR ERVL -2776 2223 1755 3 1193 2318 115 0 0 chr3 79719333 79719655 -79880128 - ORR1A4 LTR MaLR -3 326 5 3 1193 945 309 107 72 chr3 79719655 79719906 -79879877 - RMER15-int LTR ERVL -3245 1754 1519 3 1193 618 306 18 0 chr3 79720047 79720217 -79879566 - RMER15-int LTR ERVL -3692 1307 1135 3 1193 944 302 56 58 chr3 79720233 79720732 -79879051 - RMER15-int LTR ERVL -3933 1066 569 3 1193 528 348 43 25 chr3 79720760 79721040 -79878743 - RMER15-int LTR ERVL -4484 515 231 3 1193 472 331 172 16 chr3 79722330 79722585 -79877198 - RMER15 LTR ERVL -2 573 279 3 1193 227 299 76 23 chr3 79723815 79723968 -79875815 + MIRm SINE MIR 89 252 -10 3 1193 193 300 0 0 chr3 79724156 79724196 -79875587 + L2c LINE L2 3268 3307 -80 3 1193 405 0 0 0 chr3 79725156 79725201 -79874582 + (TG)n Simple_repeat Simple_repeat 2 46 0 3 1193 394 271 172 0 chr3 79725265 79725387 -79874396 - B4A SINE B4 -144 148 6 3 1193 1376 170 50 85 chr3 79726162 79726566 -79873217 - RMER17C LTR ERVK 0 410 21 3 1193 194 0 39 0 chr3 79726566 79726592 -79873191 + (TGGGGG)n Simple_repeat Simple_repeat 3 29 0 3 1193 1376 170 50 85 chr3 79726592 79726611 -79873172 - RMER17C LTR ERVK -390 20 2 3 1193 514 306 50 9 chr3 79726617 79726838 -79872945 + Lx8 LINE L1 7231 7460 -13 3 1193 302 213 81 27 chr3 79727393 79727504 -79872279 - PB1D10 SINE Alu 0 117 1 3 1193 364 291 103 0 chr3 79728208 79728442 -79871341 - L1MC5 LINE L1 -58 7903 7646 3 1193 620 217 62 48 chr3 79729164 79729309 -79870474 + B1_Mus1 SINE Alu 1 147 -1 3 1193 200 193 73 9 chr3 79729314 79729424 -79870359 + (CAAAC)n Simple_repeat Simple_repeat 3 119 0 3 1193 711 205 143 89 chr3 79729468 79729671 -79870112 - B3 SINE B2 0 216 3 3 1193 380 131 0 14 chr3 79730469 79730539 -79869244 + (AGGGGG)n Simple_repeat Simple_repeat 6 74 0 3 1193 1123 294 85 20 chr3 79730853 79731501 -79868282 - L1MA4 LINE L1 -1 6299 5610 3 1193 301 245 70 84 chr3 79732373 79732513 -79867270 + Charlie1a DNA MER1_type 14 172 -2609 3 1193 291 327 71 26 chr3 79732591 79732745 -79867038 + Charlie1 DNA MER1_type 1584 1744 -1037 3 1193 808 227 124 0 chr3 79733808 79733993 -79865790 - B3 SINE B2 -7 209 2 3 1193 393 22 0 0 chr3 79734658 79734704 -79865079 + (CCCCCG)n Simple_repeat Simple_repeat 3 48 0 3 1193 351 113 0 0 chr3 79734705 79734758 -79865025 + (TCCCC)n Simple_repeat Simple_repeat 4 56 0 3 1193 406 252 193 0 chr3 79735665 79735784 -79863999 + B1_Mur2 SINE Alu 1 142 -7 3 1193 496 311 15 132 chr3 79735836 79736162 -79863621 + B4A SINE B4 1 288 -4 3 1193 516 333 6 30 chr3 79737710 79737877 -79861906 + RSINE1 SINE B4 3 165 0 3 1193 21 36 0 0 chr3 79737888 79737916 -79861867 + AT_rich Low_complexity Low_complexity 1 28 0 3 1193 533 214 20 0 chr3 79738967 79739065 -79860718 + B1_Mur3 SINE Alu 40 139 -10 3 1193 228 130 0 0 chr3 79739090 79739136 -79860647 + (A)n Simple_repeat Simple_repeat 1 46 0 3 1193 331 246 15 0 chr3 79739560 79739625 -79860158 - RMER30 DNA MER1_type -2 200 135 3 1193 210 408 62 11 chr3 79739692 79739868 -79859915 - MIRb SINE MIR -64 204 20 3 1193 476 317 17 0 chr3 79740799 79740919 -79858864 - B1F SINE Alu -23 126 5 3 1193 1257 151 29 25 chr3 79741758 79742003 -79857780 + RMER1C Other Other 1096 1341 -1 3 1193 257 291 96 90 chr3 79743876 79744042 -79855741 - ORR1D2 LTR MaLR -184 186 20 3 1193 418 195 384 0 chr3 79744090 79744254 -79855529 - Lx9 LINE L1 -342 7302 7076 3 1193 1425 180 62 6 chr3 79744257 79744582 -79855201 + Lx9 LINE L1 7293 7635 -9 3 1193 533 275 88 21 chr3 79746254 79746447 -79853336 - ID_B1 SINE B4 -17 207 2 3 1193 189 74 0 0 chr3 79746506 79746533 -79853250 + (TTTTTG)n Simple_repeat Simple_repeat 5 31 0 3 1193 1171 61 7 0 chr3 79746533 79746680 -79853103 - B1_Mus1 SINE Alu 0 148 1 3 1193 273 277 98 10 chr3 79747111 79747213 -79852570 + PB1D7 SINE Alu 1 111 -9 3 1193 618 238 78 62 chr3 79748072 79748265 -79851518 - B3A SINE B2 0 198 3 3 1193 220 217 22 0 chr3 79749332 79749378 -79850405 + CT-rich Low_complexity Low_complexity 2 48 0 3 1193 614 49 0 12 chr3 79749383 79749466 -79850317 + (TAA)n Simple_repeat Simple_repeat 2 83 0 3 1193 380 270 70 0 chr3 79749631 79749731 -79850052 + PB1D10 SINE Alu 10 116 -1 3 1193 22 0 0 0 chr3 79750264 79750286 -79849497 + AT_rich Low_complexity Low_complexity 1 22 0 3 1193 225 182 30 15 chr3 79750454 79750521 -79849262 + (TA)n Simple_repeat Simple_repeat 1 68 0 3 1193 586 219 258 53 chr3 79752998 79753330 -79846453 - MTD LTR MaLR 0 379 1 3 1193 244 267 107 0 chr3 79754392 79754467 -79845316 - MLT1I LTR MaLR -28 383 301 4 1193 477 0 0 0 chr3 79756558 79756611 -79843172 + (TC)n Simple_repeat Simple_repeat 1 53 0 4 1193 189 0 0 0 chr3 79756611 79756631 -79843152 + (CA)n Simple_repeat Simple_repeat 1 21 0 4 1193 277 217 56 67 chr3 79756873 79756962 -79842821 - L2a LINE L2 0 3426 3339 4 1193 233 29 29 0 chr3 79757594 79757628 -79842155 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 4 1193 1154 68 0 0 chr3 79759512 79759660 -79840123 + B1_Mus1 SINE Alu 1 148 0 4 1193 213 39 0 0 chr3 79759660 79759686 -79840097 + (A)n Simple_repeat Simple_repeat 1 26 0 4 1193 185 143 48 0 chr3 79759842 79759884 -79839899 + (CAAA)n Simple_repeat Simple_repeat 2 45 0 4 1193 467 330 50 10 chr3 79760607 79760809 -79838974 - MER20 DNA MER1_type -9 210 1 4 1193 843 287 19 60 chr3 79762650 79762917 -79836866 + B4A SINE B4 3 258 -34 4 1193 293 62 21 0 chr3 79762945 79762993 -79836790 + (TC)n Simple_repeat Simple_repeat 2 50 0 4 1193 363 44 0 0 chr3 79762994 79763039 -79836744 + (CA)n Simple_repeat Simple_repeat 2 46 0 4 1193 1183 43 0 0 chr3 79763229 79763367 -79836416 - B1_Mm SINE Alu -9 138 1 4 1193 36273 29 0 0 chr3 79763413 79769893 -79829890 - L1Md_T LINE L1 0 6585 9 4 1193 189 0 0 0 chr3 79770306 79770327 -79829456 + (A)n Simple_repeat Simple_repeat 1 21 0 4 1193 384 374 45 29 chr3 79770624 79770866 -79828917 + MIRb SINE MIR 4 249 -19 4 1193 395 270 71 21 chr3 79771631 79771771 -79828012 - ORR1E LTR MaLR -212 147 1 4 1193 429 289 133 0 chr3 79771832 79772005 -79827778 - L2 LINE L2 -658 2761 2566 4 1193 405 0 0 0 chr3 79772167 79772212 -79827571 + (CA)n Simple_repeat Simple_repeat 2 46 0 4 1193 288 172 0 0 chr3 79772217 79772275 -79827508 + GA-rich Low_complexity Low_complexity 3 60 0 4 1193 661 324 76 76 chr3 79772734 79773078 -79826705 + ORR1E LTR MaLR 4 347 -12 4 1193 362 247 0 0 chr3 79773136 79773209 -79826574 - ID4 SINE ID -9 74 2 4 1193 1459 54 11 5 chr3 79773731 79773916 -79825867 + B2_Mm2 SINE B2 2 187 -8 4 1193 257 341 66 58 chr3 79774842 79774979 -79824804 - MIR SINE MIR -97 165 28 4 1193 32 0 0 0 chr3 79776136 79776168 -79823615 + AT_rich Low_complexity Low_complexity 1 32 0 4 1193 786 275 10 21 chr3 79776692 79776775 -79823008 + ID SINE ID 1 81 -143 4 1193 292 352 47 23 chr3 79776775 79776903 -79822880 + B1F1 SINE Alu 4 134 -15 4 1193 705 312 15 0 chr3 79777079 79777278 -79822505 + RMER15 LTR ERVL 369 570 -5 4 1193 580 232 91 13 chr3 79777403 79777634 -79822149 + L1MA7 LINE L1 6038 6286 -5 4 1193 453 19 0 0 chr3 79777740 79777794 -79821989 + (CA)n Simple_repeat Simple_repeat 2 55 0 4 1193 387 0 0 0 chr3 79777797 79777840 -79821943 + (GA)n Simple_repeat Simple_repeat 1 43 0 4 1193 218 167 42 0 chr3 79777843 79777891 -79821892 + (CAGA)n Simple_repeat Simple_repeat 3 52 0 4 1193 305 328 67 40 chr3 79779003 79779210 -79820573 + MLT1D LTR MaLR 1 214 -413 4 1193 513 0 0 0 chr3 79779212 79779269 -79820514 + (GA)n Simple_repeat Simple_repeat 1 57 0 4 1193 744 282 70 5 chr3 79779295 79779509 -79820274 + MLT1D LTR MaLR 268 495 -10 4 1193 909 239 38 144 chr3 79779717 79780294 -79819489 - RMER1B Other Other -4 1062 547 4 1193 214 191 0 0 chr3 79780387 79780429 -79819354 + A-rich Low_complexity Low_complexity 1 42 0 4 1193 543 107 0 0 chr3 79782487 79782571 -79817212 + (TC)n Simple_repeat Simple_repeat 1 84 0 4 1193 329 328 48 16 chr3 79782581 79782705 -79817078 - L1MC4 LINE L1 -130 7912 7785 4 1193 411 185 0 98 chr3 79784607 79784709 -79815074 + ORR1B1 LTR MaLR 1 92 -302 4 1193 3887 50 6 0 chr3 79785064 79785567 -79814216 - L1_Mus1 LINE L1 -452 6115 5610 4 1193 1369 42 0 0 chr3 79785567 79785735 -79814048 + L1_Mus1 LINE L1 6398 6565 -2 4 1193 332 274 24 12 chr3 79785753 79785838 -79813945 + PB1D9 SINE Alu 1 86 -34 4 1193 2291 53 0 0 chr3 79786174 79786474 -79813309 + L1_Mus2 LINE L1 5729 6028 -538 4 1193 2913 110 2 5 chr3 79786476 79786925 -79812858 - L1_Mus3 LINE L1 -166 6472 6025 4 1193 400 239 21 11 chr3 79786973 79787066 -79812717 + ORR1E LTR MaLR 1 94 -265 4 1193 1496 146 74 7 chr3 79787246 79787516 -79812267 - Lx2 LINE L1 -1 6996 6709 4 1193 1408 128 13 0 chr3 79787516 79787742 -79812041 + Lx2 LINE L1 6481 6709 -288 4 1193 1011 257 115 45 chr3 79788498 79788828 -79810955 + ORR1E LTR MaLR 5 357 -2 4 1193 266 73 0 24 chr3 79789018 79789060 -79810723 + (TG)n Simple_repeat Simple_repeat 2 42 0 4 1193 957 329 21 7 chr3 79789760 79790042 -79809741 - B4A SINE B4 0 292 7 4 1193 23 68 0 0 chr3 79790362 79790406 -79809377 + AT_rich Low_complexity Low_complexity 1 44 0 4 1193 1816 157 26 11 chr3 79790406 79790785 -79808998 - L1_Mur3 LINE L1 -637 5243 4859 4 1193 234 0 0 0 chr3 79790789 79790815 -79808968 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 4 1193 8007 192 36 20 chr3 79790815 79792927 -79806856 + Lx6 LINE L1 5277 7430 -30 4 1193 407 297 99 0 chr3 79792940 79793051 -79806732 + B3A SINE B2 27 148 -50 4 1193 231 125 0 0 chr3 79793086 79793126 -79806657 + (CA)n Simple_repeat Simple_repeat 1 40 0 4 1193 333 343 7 35 chr3 79794422 79794564 -79805219 + MER5B DNA MER1_type 41 178 0 4 1193 235 304 95 0 chr3 79794657 79794775 -79805008 - MIR SINE MIR -26 236 112 4 1193 210 150 0 0 chr3 79795556 79795596 -79804187 + (GA)n Simple_repeat Simple_repeat 1 40 0 4 1193 283 341 88 58 chr3 79796377 79796572 -79803211 - MLT1G LTR MaLR -346 249 44 4 1193 895 171 92 150 chr3 79796684 79796830 -79802953 + URR1A DNA MER1_type 1 146 -80 4 1193 4038 48 8 6 chr3 79796830 79797331 -79802452 - L1Md_F2 LINE L1 -3 6579 6078 4 1193 895 171 92 150 chr3 79797331 79797424 -79802359 + URR1A DNA MER1_type 147 226 0 4 1193 271 234 50 60 chr3 79797338 79797438 -79802345 - CYRA11_Mm Unknown Y-chromosome -362 255 157 4 1193 304 40 40 0 chr3 79798607 79798657 -79801126 + (CAAAA)n Simple_repeat Simple_repeat 2 53 0 4 1193 699 259 70 0 chr3 79798877 79799120 -79800663 - L1MC LINE L1 -563 5770 5511 4 1193 311 344 11 0 chr3 79799371 79799464 -79800319 + PB1D10 SINE Alu 3 96 -21 4 1193 553 246 22 41 chr3 79799590 79799756 -79800027 + RMER20B LTR ERVK 1 161 -355 4 1193 234 236 0 35 chr3 79800530 79800587 -79799196 + GA-rich Low_complexity Low_complexity 2 56 0 4 1193 258 332 66 86 chr3 79800762 79801006 -79798777 - LTR52 LTR ERVL -40 381 143 4 1193 251 283 70 38 chr3 79801278 79801436 -79798347 + L1_Mur3 LINE L1 463 625 -7103 4 1193 1351 251 137 16 chr3 79801468 79802016 -79797767 + L1_Mur3 LINE L1 710 1323 -6405 4 1193 463 174 0 0 chr3 79801993 79802079 -79797704 + L1_Mur3 LINE L1 3509 3594 -2286 4 1193 6387 169 86 19 chr3 79802079 79803119 -79796664 + L1_Mur3 LINE L1 3548 4624 -1256 4 1193 1392 50 0 0 chr3 79803119 79803441 -79796342 + (CA)n Simple_repeat Simple_repeat 1 322 0 4 1193 6387 169 86 19 chr3 79803441 79803886 -79795897 + L1_Mur3 LINE L1 4625 5131 -749 4 1193 36 0 0 0 chr3 79803941 79803977 -79795806 + AT_rich Low_complexity Low_complexity 1 36 0 4 1193 795 21 0 0 chr3 79804134 79804227 -79795556 + (TTC)n Simple_repeat Simple_repeat 2 94 0 4 1193 7090 63 19 1 chr3 79804233 79805539 -79794244 - L1Md_F2 LINE L1 -6 6576 5248 4 1193 204 40 0 0 chr3 79805539 79805564 -79794219 + (TA)n Simple_repeat Simple_repeat 2 26 0 4 1193 5598 57 14 0 chr3 79805564 79805669 -79794114 - L1Md_F2 LINE L1 -636 5247 5133 4 1193 2209 185 27 7 chr3 79805784 79806197 -79793586 + MTC LTR MaLR 1 421 0 4 1193 218 171 0 0 chr3 79807059 79807100 -79792683 + L3 LINE CR1 1130 1170 -3319 4 1193 605 256 0 22 chr3 79807786 79807922 -79791861 - B1_Mur2 SINE Alu -16 133 1 4 1193 26 50 0 0 chr3 79809279 79809319 -79790464 + AT_rich Low_complexity Low_complexity 1 40 0 4 1193 312 321 96 15 chr3 79809554 79809690 -79790093 + B4A SINE B4 5 151 -141 4 1193 653 314 114 19 chr3 79811738 79812274 -79787509 - L1MA6 LINE L1 -403 5897 5311 4 1193 717 241 143 33 chr3 79812404 79812614 -79787169 + B4A SINE B4 24 256 -36 4 1193 1023 285 30 75 chr3 79812650 79813329 -79786454 + Lx8 LINE L1 5274 5968 -1676 4 1193 662 297 60 36 chr3 79813573 79814182 -79785601 + L1_Mur2 LINE L1 4401 5028 -1115 4 1193 2125 68 0 0 chr3 79814177 79814457 -79785326 - L1Md_F3 LINE L1 -292 6292 6013 4 1193 1997 40 8 0 chr3 79814457 79814704 -79785079 + L1Md_F3 LINE L1 6322 6570 -14 4 1193 207 0 0 0 chr3 79814812 79814835 -79784948 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 4 1193 13232 19 0 0 chr3 79814838 79817106 -79782677 - L1Md_T LINE L1 -2 6580 4312 4 149 39060 14 2 6 chr3 79817105 79823514 -79776269 - L1Md_A LINE L1 0 6582 202 4 1194 267 320 42 27 chr3 79823552 79823812 -79775971 + L1_Mur2 LINE L1 5013 5276 -867 4 1194 384 247 4 130 chr3 79824461 79824722 -79775061 - L1M5 LINE L1 -2929 3217 2990 4 1194 313 333 132 44 chr3 79824729 79825046 -79774737 - L1M5 LINE L1 -3314 2832 2488 4 1194 542 306 24 53 chr3 79825073 79825242 -79774541 - RSINE1 SINE B4 0 165 2 4 1194 728 288 36 40 chr3 79825588 79825866 -79773917 + MLT1A0 LTR MaLR 6 282 -83 4 1194 232 259 35 0 chr3 79825814 79825872 -79773911 - MLT1D LTR MaLR -185 320 261 4 1194 586 293 169 24 chr3 79825992 79826205 -79773578 + B4 SINE B4 1 244 -48 4 1194 447 35 0 0 chr3 79826213 79826270 -79773513 + (CA)n Simple_repeat Simple_repeat 2 58 0 4 1194 188 250 23 0 chr3 79826374 79826418 -79773365 + MIR SINE MIR 146 190 -72 4 1194 6678 216 81 10 chr3 79827156 79828719 -79771064 - Lx6 LINE L1 -6 7454 5781 4 1194 279 0 0 0 chr3 79828719 79828750 -79771033 + (TTC)n Simple_repeat Simple_repeat 1 31 0 4 1194 1473 39 0 0 chr3 79828750 79828930 -79770853 + (TTCTCC)n Simple_repeat Simple_repeat 1 180 0 4 1194 845 139 18 22 chr3 79828930 79829195 -79770588 + CT-rich Low_complexity Low_complexity 1 264 0 4 1194 2561 177 13 24 chr3 79829195 79829734 -79770049 - L1_Mur3 LINE L1 -90 5790 5258 4 1194 1400 134 128 92 chr3 79829733 79830070 -79769713 + L1_Mur3 LINE L1 4859 5207 -673 4 1194 501 191 104 96 chr3 79830071 79830291 -79769492 - Lx6 LINE L1 -455 5425 5204 4 1194 252 194 16 0 chr3 79830297 79830359 -79769424 + GA-rich Low_complexity Low_complexity 2 64 0 4 1194 1601 137 88 3 chr3 79830359 79830688 -79769095 - Lx6 LINE L1 -1315 4565 4209 4 1194 4144 70 0 40 chr3 79830711 79831281 -79768502 - L1_Mus2 LINE L1 -1 6565 6019 5 1194 1589 101 171 0 chr3 79831281 79831567 -79768216 + L1_Mm LINE L1 4624 4958 -925 5 1194 728 150 259 0 chr3 79831584 79831777 -79768006 - Lx6 LINE L1 -3837 2043 1801 4 1194 907 246 80 8 chr3 79831785 79832222 -79767561 - Lx6 LINE L1 -6646 1082 733 4 1194 357 24 0 0 chr3 79832223 79832265 -79767518 + (GA)n Simple_repeat Simple_repeat 2 43 0 5 1194 673 256 161 23 chr3 79832378 79832762 -79767021 - L1MA6 LINE L1 -18 6282 5846 5 1194 231 264 89 16 chr3 79832919 79833042 -79766741 - MIR SINE MIR -45 217 86 5 1194 29 47 0 0 chr3 79833140 79833183 -79766600 + AT_rich Low_complexity Low_complexity 1 43 0 5 1194 513 204 41 55 chr3 79833183 79833328 -79766455 - B1F SINE Alu -6 143 1 5 1194 709 75 47 0 chr3 79834043 79834149 -79765634 - B1_Mus2 SINE Alu -1 146 36 5 1194 329 329 107 53 chr3 79834939 79835288 -79764495 + MTEa LTR MaLR 11 365 -14 5 1194 696 305 159 9 chr3 79835302 79835636 -79764147 + MTEa-int LTR MaLR 2 385 -1195 5 1194 608 319 46 70 chr3 79835863 79836122 -79763661 + ORR1E LTR MaLR 101 353 -6 5 1194 217 309 112 64 chr3 79836327 79836514 -79763269 + MIRb SINE MIR 30 225 -43 5 1194 507 33 0 0 chr3 79836791 79836852 -79762931 + (TG)n Simple_repeat Simple_repeat 1 61 0 5 1194 29 0 0 0 chr3 79837411 79837440 -79762343 + AT_rich Low_complexity Low_complexity 1 29 0 5 1194 3170 213 77 46 chr3 79837444 79837608 -79762175 - Lx7 LINE L1 -1 7695 7521 5 1194 216 0 0 0 chr3 79837608 79837632 -79762151 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 5 1194 3170 213 77 46 chr3 79837632 79838363 -79761420 - Lx7 LINE L1 -176 7520 6773 5 1194 3757 101 7 11 chr3 79838364 79838934 -79760849 - Lx3_Mus LINE L1 -371 6638 6071 5 1194 2400 78 38 3 chr3 79838934 79839281 -79760502 + Lx3_Mus LINE L1 6633 6991 -18 5 1194 217 283 158 32 chr3 79839380 79839475 -79760308 - PB1D10 SINE Alu -1 116 10 5 1194 1207 84 6 6 chr3 79839482 79839661 -79760122 + (TCTCC)n Simple_repeat Simple_repeat 1 179 0 5 1194 274 272 37 12 chr3 79839802 79839884 -79759899 - Tigger5 DNA MER2_type -5 2401 2318 5 1194 625 276 6 6 chr3 79840239 79840396 -79759387 - RSINE1 SINE B4 -6 159 3 5 1194 1852 204 8 50 chr3 79840503 79840879 -79758904 - ORR1D1 LTR MaLR -13 361 2 5 1194 8050 25 4 3 chr3 79841005 79841933 -79757850 + RLTR13B3 LTR ERVK 1 929 0 5 1194 654 250 88 10 chr3 79843444 79843638 -79756145 - B3 SINE B2 -6 210 2 5 1194 186 359 22 116 chr3 79844046 79844270 -79755513 - L2c LINE L2 -89 3298 3096 5 1194 237 365 40 26 chr3 79846019 79846171 -79753612 - MIRb SINE MIR -26 242 89 5 1194 219 69 0 0 chr3 79846973 79847002 -79752781 + (T)n Simple_repeat Simple_repeat 1 29 0 5 1194 369 0 0 0 chr3 79848113 79848154 -79751629 + (CAAA)n Simple_repeat Simple_repeat 2 42 0 5 1194 246 288 137 0 chr3 79848459 79848532 -79751251 - MLT1A LTR MaLR -284 90 8 5 1194 382 304 91 33 chr3 79849070 79849319 -79750464 - MTEa LTR MaLR -3 376 97 5 1194 2624 68 9 147 chr3 79849320 79849784 -79749999 + MTB LTR MaLR 1 400 0 5 1194 350 247 26 13 chr3 79850264 79850342 -79749441 + B1F1 SINE Alu 21 99 -50 5 1194 369 370 97 56 chr3 79851295 79851636 -79748147 + MLT2F LTR ERVL 302 656 -7 5 1194 582 28 0 0 chr3 79851963 79852035 -79747748 + (TG)n Simple_repeat Simple_repeat 2 73 0 5 1194 191 291 12 37 chr3 79852134 79852216 -79747567 + L2 LINE L2 1683 1762 -1657 5 1194 379 269 245 14 chr3 79852829 79852976 -79746807 + B3A SINE B2 3 183 -15 5 1194 324 0 0 0 chr3 79853162 79853198 -79746585 + (TTCA)n Simple_repeat Simple_repeat 3 38 0 5 1194 257 315 0 0 chr3 79853198 79853271 -79746512 - ID4_ SINE ID -9 74 2 5 1194 896 265 120 2 chr3 79854116 79854524 -79745259 - L1MA8 LINE L1 -6 6285 5830 5 1194 22 35 0 0 chr3 79854821 79854850 -79744933 + AT_rich Low_complexity Low_complexity 1 29 0 5 1194 274 292 72 10 chr3 79854990 79855087 -79744696 + B1_Mur1 SINE Alu 33 135 -14 5 1194 226 218 152 11 chr3 79855454 79855548 -79744235 - B1F SINE Alu -8 109 4 5 1194 582 15 0 0 chr3 79855847 79855914 -79743869 + (TC)n Simple_repeat Simple_repeat 2 68 0 5 1194 341 239 68 49 chr3 79856619 79856782 -79743001 - L1MA6 LINE L1 -5 6295 6130 5 1194 614 284 40 0 chr3 79857410 79857586 -79742197 - RMER5 LTR ERV1 0 534 352 5 1194 904 237 69 42 chr3 79857611 79857871 -79741912 - RMER5 LTR ERV1 -251 283 17 5 1194 682 283 135 4 chr3 79858173 79858432 -79741351 + MER90a LTR ERV1 1 293 -321 5 1194 1716 207 161 74 chr3 79858554 79858601 -79741182 - MT2B LTR ERVL 0 601 562 5 1194 546 16 0 0 chr3 79858601 79858664 -79741119 + (TCCC)n Simple_repeat Simple_repeat 3 65 0 5 1194 1716 207 161 74 chr3 79858664 79859169 -79740614 - MT2B LTR ERVL -40 561 1 5 1194 1965 176 56 13 chr3 79859169 79859561 -79740222 - MTC LTR MaLR -11 410 2 5 1194 258 81 0 0 chr3 79860274 79860311 -79739472 + (CAGA)n Simple_repeat Simple_repeat 1 37 0 5 1194 195 42 0 0 chr3 79860473 79860497 -79739286 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 5 1194 267 302 96 51 chr3 79861383 79861561 -79738222 - L2 LINE L2 -914 2505 2320 5 1194 577 38 0 24 chr3 79862428 79862510 -79737273 + (TTCC)n Simple_repeat Simple_repeat 1 80 0 5 1194 595 266 28 7 chr3 79864721 79864865 -79734918 + B1F2 SINE Alu 2 148 -1 5 1194 401 245 50 83 chr3 79866499 79866619 -79733164 - B3A SINE B2 -73 125 10 5 1194 222 263 0 0 chr3 79866756 79866813 -79732970 + CT-rich Low_complexity Low_complexity 2 58 0 5 1194 320 333 55 39 chr3 79866823 79866951 -79732832 - B1F SINE Alu -13 136 7 5 1194 5376 62 9 3 chr3 79867191 79867872 -79731911 - L1_Mus2 LINE L1 0 6566 5882 5 1194 238 315 55 0 chr3 79869423 79869496 -79730287 + ID2 SINE ID 3 79 -4 5 1194 367 308 39 0 chr3 79869616 79869720 -79730063 - PB1D7 SINE Alu -12 108 1 5 1194 354 296 68 19 chr3 79870184 79870346 -79729437 - RLTR21 LTR ERVK -239 1333 1164 5 1194 1030 222 20 0 chr3 79870946 79871144 -79728639 + B3 SINE B2 15 216 0 5 1194 765 278 56 0 chr3 79871649 79871847 -79727936 - ID_B1 SINE B4 -9 215 7 5 1194 297 170 38 0 chr3 79872204 79872257 -79727526 - L2 LINE L2 -1866 1553 1499 5 1194 291 315 98 0 chr3 79872363 79872506 -79727277 - LTR78 LTR ERV1 -5 1299 1143 5 1194 317 250 161 0 chr3 79872755 79872867 -79726916 + MTEa LTR MaLR 8 137 -242 5 1194 1565 206 53 66 chr3 79872867 79872894 -79726889 + ORR1D1 LTR MaLR 1 27 -347 5 1194 1310 211 128 34 chr3 79872894 79872950 -79726833 - MTC LTR MaLR 0 421 369 5 1194 324 0 0 0 chr3 79872950 79872986 -79726797 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 5 1194 1310 211 128 34 chr3 79872986 79873312 -79726471 - MTC LTR MaLR -53 368 3 5 1194 1565 206 53 66 chr3 79873312 79873663 -79726120 + ORR1D1 LTR MaLR 28 374 0 5 1194 586 280 18 132 chr3 79873663 79873939 -79725844 + MTEa LTR MaLR 136 379 0 5 1194 265 197 29 29 chr3 79874271 79874339 -79725444 + GA-rich Low_complexity Low_complexity 2 69 0 5 1194 226 385 75 20 chr3 79875325 79875471 -79724312 - MLT1A LTR MaLR -201 173 20 5 1194 387 315 18 9 chr3 79875692 79875804 -79723979 - B1F2 SINE Alu -21 128 16 5 1194 685 173 17 23 chr3 79876167 79876344 -79723439 + (TATG)n Simple_repeat Simple_repeat 4 179 0 5 1194 1170 319 68 8 chr3 79876416 79876798 -79722985 + Tigger7 DNA MER2_type 1 405 -2086 5 1194 360 0 0 0 chr3 79876908 79876948 -79722835 + (TA)n Simple_repeat Simple_repeat 2 41 0 5 1194 217 0 61 0 chr3 79877426 79877459 -79722324 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 5 1194 1256 230 101 17 chr3 79877809 79878154 -79721629 + MTEa LTR MaLR 6 379 0 5 1194 661 38 0 0 chr3 79878454 79878534 -79721249 + L1Md_F2 LINE L1 5507 5586 -297 5 1194 8219 40 2 2 chr3 79878534 79879528 -79720255 + L1Md_F2 LINE L1 5587 6580 -2 5 1194 257 156 0 22 chr3 79879529 79879575 -79720208 - MTE2b LTR MaLR -46 333 289 5 1194 502 291 32 19 chr3 79879559 79879713 -79720070 - MTE2b LTR MaLR -223 156 1 5 1194 831 211 0 13 chr3 79881416 79881565 -79718218 - B1_Mur1 SINE Alu -1 148 2 5 1194 344 410 98 7 chr3 79881615 79881912 -79717871 + LTR81A LTR ERV1? 677 1000 -350 5 1194 1878 164 47 30 chr3 79882059 79882424 -79717359 + ORR1D1 LTR MaLR 2 372 -2 5 1194 435 275 45 39 chr3 79882482 79882637 -79717146 - ID_B1 SINE B4 0 224 69 5 1194 460 56 28 0 chr3 79883289 79883361 -79716422 + (TCTCTG)n Simple_repeat Simple_repeat 2 75 0 5 1194 227 255 0 18 chr3 79883402 79883458 -79716325 - PB1D10 SINE Alu -46 71 17 5 1194 437 281 13 70 chr3 79885940 79885955 -79713828 + ID_B1 SINE B4 77 223 0 5 1194 704 221 21 7 chr3 79885955 79886096 -79713687 + B1_Mur2 SINE Alu 7 149 0 5 1194 436 244 0 47 chr3 79886428 79886557 -79713226 - L1M2 LINE L1 -644 5668 5546 5 1194 236 339 0 25 chr3 79886719 79886842 -79712941 - MIR SINE MIR -140 122 8 5 1194 311 154 15 0 chr3 79887775 79887840 -79711943 + (TA)n Simple_repeat Simple_repeat 2 67 0 5 1194 474 257 66 55 chr3 79887872 79888166 -79711617 - L1MA4 LINE L1 -284 6019 5725 5 1194 329 320 14 72 chr3 79889855 79889993 -79709790 + RMER10B LTR ERVL 269 398 0 5 1194 241 313 222 60 chr3 79891135 79891437 -79708346 - MLT1F LTR MaLR -187 361 11 5 1194 396 0 0 0 chr3 79892911 79892955 -79706828 + (CA)n Simple_repeat Simple_repeat 1 44 0 5 1194 1613 269 59 63 chr3 79893985 79894726 -79705057 + Lx5 LINE L1 4816 5553 -327 5 1194 4167 25 2 0 chr3 79894727 79895236 -79704547 - ORR1A0-int LTR MaLR -1281 511 2 5 1194 2909 15 0 0 chr3 79895241 79895579 -79704204 - ORR1A0 LTR MaLR -8 338 1 5 1194 6301 175 39 44 chr3 79895580 79897095 -79702688 + Lx5 LINE L1 5548 7050 0 5 1194 1001 276 12 24 chr3 79897122 79897452 -79702331 + L1_Rod LINE L1 5340 5665 -182 5 1194 372 333 7 7 chr3 79897493 79897635 -79702148 + Lx8 LINE L1 7091 7232 -241 5 1194 522 0 0 0 chr3 79897705 79897763 -79702020 + (TA)n Simple_repeat Simple_repeat 1 58 0 5 1194 188 111 0 27 chr3 79897797 79897834 -79701949 + (GGGTG)n Simple_repeat Simple_repeat 1 36 0 5 1194 1300 210 121 63 chr3 79897938 79897977 -79701806 + MTD LTR MaLR 1 47 -372 6 1194 414 0 0 0 chr3 79897977 79898023 -79701760 + (CAAAA)n Simple_repeat Simple_repeat 2 47 0 6 1194 1300 210 121 63 chr3 79898023 79898168 -79701615 + MTD LTR MaLR 48 201 -218 6 1194 3749 47 0 0 chr3 79898168 79898617 -79701166 + L1_Mus1 LINE L1 6119 6567 0 6 1194 1300 210 121 63 chr3 79898617 79898827 -79700956 + MTD LTR MaLR 202 417 -2 6 1194 413 236 144 75 chr3 79899141 79899315 -79700468 + B3A SINE B2 3 188 -10 6 1194 241 261 77 29 chr3 79899330 79899500 -79700283 + L1MA6 LINE L1 6122 6299 -1 6 1194 278 295 67 0 chr3 79900548 79900653 -79699130 - MIRc SINE MIR -13 255 144 6 1194 376 312 40 55 chr3 79900682 79900882 -79698901 + B3A SINE B2 2 198 0 6 1194 503 288 72 0 chr3 79901390 79901543 -79698240 + B3A SINE B2 34 197 -1 6 1194 26 0 0 0 chr3 79902265 79902291 -79697492 + AT_rich Low_complexity Low_complexity 1 26 0 6 1194 586 276 8 0 chr3 79902837 79902964 -79696819 - RSINE1 SINE B4 -29 136 9 6 1194 474 324 101 55 chr3 79903985 79904204 -79695579 + MLT1J LTR MaLR 76 304 -208 6 1194 362 225 24 59 chr3 79904393 79904478 -79695305 + MTEb LTR MaLR 9 90 -289 6 1194 969 275 13 81 chr3 79904527 79904836 -79694947 + MTEb LTR MaLR 92 379 0 6 1194 354 23 0 0 chr3 79904864 79904907 -79694876 + (TG)n Simple_repeat Simple_repeat 2 44 0 6 1194 270 317 12 0 chr3 79905049 79905131 -79694652 - PB1D10 SINE Alu -3 114 32 6 1194 432 0 0 0 chr3 79905292 79905340 -79694443 + (TG)n Simple_repeat Simple_repeat 1 48 0 6 1194 678 214 0 8 chr3 79906047 79906174 -79693609 - B1_Mur3 SINE Alu -1 148 23 6 1194 1751 186 81 47 chr3 79906185 79906654 -79693129 + RMER1C Other Other 849 1333 -9 6 1194 663 219 0 0 chr3 79909187 79909669 -79690114 + (CA)n Simple_repeat Simple_repeat 1 482 0 6 1194 655 195 4 12 chr3 79909697 79909949 -79689834 + (CA)n Simple_repeat Simple_repeat 1 249 0 6 1194 5389 224 74 19 chr3 79911616 79911737 -79688046 - Lx7 LINE L1 -43 7653 7517 6 1194 279 0 0 0 chr3 79911737 79911768 -79688015 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 6 1194 5389 224 74 19 chr3 79911768 79911910 -79687873 - Lx7 LINE L1 -180 7516 7358 6 1194 279 0 0 0 chr3 79911910 79911941 -79687842 + (CA)n Simple_repeat Simple_repeat 2 32 0 6 1194 477 0 0 0 chr3 79911941 79911993 -79687790 + (GA)n Simple_repeat Simple_repeat 2 54 0 6 1194 5389 224 74 19 chr3 79911993 79912702 -79687081 - Lx7 LINE L1 -339 7357 6609 6 1194 438 36 0 0 chr3 79912702 79912758 -79687025 + (TTTTA)n Simple_repeat Simple_repeat 2 57 0 6 1194 5389 224 74 19 chr3 79912758 79913212 -79686571 - Lx7 LINE L1 -1088 6608 6147 6 1194 396 129 14 0 chr3 79913311 79913381 -79686402 - L1_Mur3 LINE L1 -1967 3913 3843 6 1194 1277 204 79 3 chr3 79913443 79913758 -79686025 - L1_Mur3 LINE L1 -2031 3849 3511 6 1194 696 160 39 66 chr3 79913762 79914005 -79685778 - MTB_Mm LTR MaLR -98 269 33 6 1194 276 30 0 0 chr3 79914017 79914050 -79685733 + (CA)n Simple_repeat Simple_repeat 2 34 0 6 1194 576 0 0 0 chr3 79914050 79914113 -79685670 + (GA)n Simple_repeat Simple_repeat 2 65 0 6 1194 2246 180 30 26 chr3 79914122 79914658 -79685125 - L1_Mur3 LINE L1 -3482 2398 1861 6 1194 301 148 393 5 chr3 79914658 79914759 -79685024 + B1_Mus2 SINE Alu 1 147 0 6 1194 2611 177 51 9 chr3 79914808 79915301 -79684482 - L1_Mur3 LINE L1 -4007 1873 1356 6 1194 1708 173 93 26 chr3 79915301 79915645 -79684138 - ORR1B2 LTR MaLR 0 367 1 6 1194 2611 206 71 9 chr3 79915645 79915861 -79683922 - L1_Mur3 LINE L1 -4525 1355 1135 6 1194 1658 202 68 107 chr3 79915861 79916299 -79683484 - MTC LTR MaLR 0 421 1 6 1194 1673 269 116 10 chr3 79916299 79916782 -79683001 - L1_Mur3 LINE L1 -6594 1134 581 6 1194 282 318 89 44 chr3 79918239 79918374 -79681409 + MLT1A LTR MaLR 1 141 -233 6 1194 1408 292 161 82 chr3 79918401 79918925 -79680858 + Charlie5 DNA MER1_type 267 850 -1774 6 1194 567 311 0 0 chr3 79918925 79919057 -79680726 + B1F2 SINE Alu 5 136 -13 6 1194 1408 303 106 91 chr3 79919057 79919648 -79680135 + Charlie5 DNA MER1_type 851 1453 -1171 6 1194 944 293 21 3 chr3 79919648 79919932 -79679851 + B4A SINE B4 3 291 -1 6 1194 1408 303 106 91 chr3 79919932 79920621 -79679162 + Charlie5 DNA MER1_type 1454 2144 -480 6 1194 414 0 0 0 chr3 79920621 79920667 -79679116 + (TA)n Simple_repeat Simple_repeat 1 46 0 6 1194 1408 303 106 91 chr3 79920667 79920791 -79678992 + Charlie5 DNA MER1_type 2145 2258 -366 6 1194 370 300 108 41 chr3 79920845 79921113 -79678670 + Charlie5 DNA MER1_type 2259 2544 -80 6 1194 8671 49 0 15 chr3 79921365 79923214 -79676569 - L1Md_F2 LINE L1 -11 6571 4746 6 1194 451 315 148 27 chr3 79923478 79923775 -79676008 - LTR53 LTR ERVL -174 345 13 6 1194 372 190 0 0 chr3 79924562 79924641 -79675142 + GA-rich Low_complexity Low_complexity 2 80 0 6 1194 3498 196 49 4 chr3 79925198 79925915 -79673868 + Lx2B LINE L1 6250 6998 -2 6 1194 32 0 0 0 chr3 79926316 79926348 -79673435 + AT_rich Low_complexity Low_complexity 1 32 0 6 1194 362 232 0 0 chr3 79926479 79926561 -79673222 - Lx7 LINE L1 -384 7312 7231 6 1194 480 163 0 0 chr3 79927100 79927186 -79672597 + (CAGAGA)n Simple_repeat Simple_repeat 4 89 0 6 1194 1419 69 37 5 chr3 79927213 79927402 -79672381 + B2_Mm2 SINE B2 1 195 0 6 1194 4276 14 2 8 chr3 79929263 79929748 -79670035 + LTRIS_Mm LTR ERV1 1 482 0 6 1194 1021 297 80 9 chr3 79930521 79930847 -79668936 + MTEa LTR MaLR 1 349 -30 6 1194 1453 140 208 3 chr3 79930864 79931157 -79668626 - ORR1B2 LTR MaLR -14 353 1 6 1194 427 317 42 48 chr3 79932026 79932215 -79667568 - MTD LTR MaLR -189 230 43 6 1194 2490 99 3 56 chr3 79933312 79933686 -79666097 - IAPEY2_LTR LTR ERVK -3 354 1 6 1194 2676 122 17 33 chr3 79933686 79934342 -79665441 - IAPEY3-int LTR ERVK 0 7581 6984 6 1194 184 377 44 0 chr3 79934342 79934456 -79665327 - L3b LINE CR1 -29 453 335 6 1194 3398 65 9 0 chr3 79934471 79934919 -79664864 - IAPEY3-int LTR ERVK -4991 2689 2238 6 1194 8894 128 21 23 chr3 79934896 79936507 -79663276 - IAPEY3-int LTR ERVK -5698 1982 17 6 1194 2376 87 0 9 chr3 79936507 79936833 -79662950 - IAPEY2_LTR LTR ERVK -3 354 32 6 1194 2527 227 59 6 chr3 79937774 79938418 -79661365 + Lx2B LINE L1 6319 6996 -4 6 1194 276 170 0 0 chr3 79938418 79938471 -79661312 + (CAA)n Simple_repeat Simple_repeat 1 53 0 6 1194 2027 194 58 5 chr3 79938500 79938900 -79660883 + MTC LTR MaLR 1 421 0 6 1194 666 328 17 21 chr3 79939682 79939922 -79659861 + RMER15 LTR ERVL 324 562 -13 6 1194 426 326 126 29 chr3 79941004 79941250 -79658533 - RMER5 LTR ERV1 -73 461 192 6 1194 966 271 120 3 chr3 79941373 79941706 -79658077 - ORR1D1 LTR MaLR 0 374 3 6 1194 730 71 23 16 chr3 79941774 79941903 -79657880 + (TCTA)n Simple_repeat Simple_repeat 2 131 0 6 1194 486 156 56 0 chr3 79941988 79942062 -79657721 - ORR1A4 LTR MaLR -8 321 243 6 1194 2851 152 23 15 chr3 79942062 79942537 -79657246 + RLTR20A2 LTR ERVK 1 479 -99 6 1194 378 0 0 0 chr3 79942537 79942579 -79657204 + (TG)n Simple_repeat Simple_repeat 2 43 0 6 1194 9030 131 48 119 chr3 79942591 79944507 -79655276 + ORR1A4-int LTR MaLR 185 1963 0 6 1194 1719 142 62 40 chr3 79944507 79944829 -79654954 + ORR1A4 LTR MaLR 1 329 0 6 1194 636 86 19 9 chr3 79944948 79945054 -79654729 + (GA)n Simple_repeat Simple_repeat 2 108 0 6 1194 217 155 0 33 chr3 79945470 79945530 -79654253 + (TA)n Simple_repeat Simple_repeat 2 59 0 6 1194 367 277 110 25 chr3 79945830 79945993 -79653790 + LTR37A LTR ERV1 126 302 -124 6 1194 21 0 0 0 chr3 79946659 79946680 -79653103 + AT_rich Low_complexity Low_complexity 1 21 0 6 1194 234 156 0 0 chr3 79946724 79946769 -79653014 + (CATA)n Simple_repeat Simple_repeat 3 47 0 6 1194 554 58 29 19 chr3 79946930 79947035 -79652748 + (TCTA)n Simple_repeat Simple_repeat 2 107 0 6 1194 400 263 171 12 chr3 79947228 79947620 -79652163 - L1MB4 LINE L1 -157 6026 5573 6 149 32087 83 15 11 chr3 79947916 79954042 -79645741 - L1Md_F2 LINE L1 -12 6570 415 6 1195 261 227 15 0 chr3 79954244 79954310 -79645473 - L1MB4 LINE L1 -624 5559 5493 6 1195 372 270 130 0 chr3 79954335 79954435 -79645348 - PB1D10 SINE Alu -3 117 5 6 1195 3019 153 31 11 chr3 79954653 79955203 -79644580 + RLTR31_Mm LTR ERVK 1 561 0 6 1195 33 56 0 0 chr3 79955253 79955307 -79644476 + AT_rich Low_complexity Low_complexity 1 54 0 6 1195 885 130 226 0 chr3 79955660 79955837 -79643946 + URR1B DNA MER1_type 2 218 -7 6 1195 968 68 0 8 chr3 79956374 79956508 -79643275 + (CCCCCT)n Simple_repeat Simple_repeat 5 137 0 6 1195 441 0 0 0 chr3 79956508 79956557 -79643226 + (TTC)n Simple_repeat Simple_repeat 3 51 0 6 1195 4535 82 8 19 chr3 79956619 79956635 -79643148 + L1_Mus1 LINE L1 5939 5949 -618 6 1195 189 0 0 0 chr3 79956635 79956656 -79643127 + (CA)n Simple_repeat Simple_repeat 2 22 0 6 1195 4535 82 8 19 chr3 79956656 79957272 -79642511 + L1_Mus1 LINE L1 5950 6563 -4 6 1195 447 87 0 0 chr3 79957388 79957457 -79642326 + (CA)n Simple_repeat Simple_repeat 2 70 0 6 1195 24 53 0 0 chr3 79957720 79957758 -79642025 + AT_rich Low_complexity Low_complexity 1 38 0 6 1195 207 162 0 0 chr3 79958493 79958530 -79641253 + CT-rich Low_complexity Low_complexity 2 38 0 6 1195 222 37 0 0 chr3 79958532 79958559 -79641224 + (CA)n Simple_repeat Simple_repeat 1 27 0 6 1195 2753 208 52 17 chr3 79958755 79959131 -79640652 + Lx7 LINE L1 4457 4851 -1029 6 1195 720 52 0 0 chr3 79959131 79959228 -79640555 + (CCAA)n Simple_repeat Simple_repeat 3 99 0 6 1195 2753 208 52 17 chr3 79959228 79959545 -79640238 + Lx7 LINE L1 4852 5174 -706 6 1195 2576 70 20 0 chr3 79959547 79959891 -79639892 + L1_Mus1 LINE L1 6211 6561 -6 6 1195 248 0 0 30 chr3 79959894 79959927 -79639856 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 6 1195 3021 223 85 15 chr3 79959931 79961450 -79638333 + L1_Mur3 LINE L1 69 1942 -3938 6 1195 247 240 0 0 chr3 79961450 79961500 -79638283 + Lx6 LINE L1 7145 7194 -266 6 1195 866 290 45 16 chr3 79961498 79961873 -79637910 + Lx7 LINE L1 5812 6197 -1499 6 1195 271 298 95 40 chr3 79962149 79962275 -79637508 - MIR SINE MIR -46 216 84 6 1195 186 43 0 0 chr3 79962343 79962366 -79637417 + (TCTG)n Simple_repeat Simple_repeat 2 24 0 6 1195 279 0 0 0 chr3 79962387 79962418 -79637365 + (TG)n Simple_repeat Simple_repeat 1 31 0 6 1195 459 0 0 0 chr3 79962418 79962468 -79637315 + (GA)n Simple_repeat Simple_repeat 1 51 0 6 1195 583 307 7 7 chr3 79962479 79962633 -79637150 - RSINE1 SINE B4 -8 157 4 6 1195 432 0 0 0 chr3 79963075 79963123 -79636660 + (CA)n Simple_repeat Simple_repeat 1 48 0 6 1195 279 0 0 0 chr3 79963123 79963153 -79636630 + (GA)n Simple_repeat Simple_repeat 2 32 0 6 1195 347 145 0 43 chr3 79963428 79963543 -79636240 + (CCAA)n Simple_repeat Simple_repeat 1 110 0 6 1195 226 266 113 48 chr3 79963844 79964030 -79635753 + L1MEc LINE L1 1322 1519 -4881 6 1195 21 0 0 0 chr3 79964185 79964206 -79635577 + AT_rich Low_complexity Low_complexity 1 21 0 6 1195 378 119 30 0 chr3 79964449 79964516 -79635267 + L1M5 LINE L1 5417 5485 -677 6 1195 869 281 88 57 chr3 79964711 79964994 -79634789 + B4A SINE B4 1 292 0 6 1195 222 215 30 15 chr3 79965004 79965070 -79634713 + (CATA)n Simple_repeat Simple_repeat 2 68 0 6 1195 684 115 0 0 chr3 79965156 79965260 -79634523 + (TA)n Simple_repeat Simple_repeat 2 105 0 6 1195 2715 173 64 14 chr3 79965458 79965973 -79633810 + RLTR20A LTR ERVK 1 541 0 7 1195 785 289 93 50 chr3 79967447 79967727 -79632056 + B4 SINE B4 1 292 0 7 1195 459 0 0 0 chr3 79967776 79967827 -79631956 + (CA)n Simple_repeat Simple_repeat 1 51 0 7 1195 23 0 0 0 chr3 79968286 79968309 -79631474 + AT_rich Low_complexity Low_complexity 1 23 0 7 1195 2161 84 0 3 chr3 79968717 79969028 -79630755 - L1Md_F2 LINE L1 -1189 4694 4385 7 1195 6618 69 0 2 chr3 79969021 79969920 -79629863 + L1Md_F2 LINE L1 4690 5586 -297 7 1195 7799 64 6 2 chr3 79969920 79970909 -79628874 + L1Md_F2 LINE L1 5587 6579 -3 7 1195 652 214 11 0 chr3 79971730 79971908 -79627875 + (TA)n Simple_repeat Simple_repeat 1 180 0 7 1195 225 250 0 0 chr3 79971968 79972044 -79627739 + (TA)n Simple_repeat Simple_repeat 1 76 0 7 1195 215 225 14 0 chr3 79972196 79972267 -79627516 + (TA)n Simple_repeat Simple_repeat 1 72 0 7 1195 3391 38 2 0 chr3 79972282 79972677 -79627106 - MTA_Mm LTR MaLR 0 396 1 7 1195 861 262 19 0 chr3 79972778 79972984 -79626799 + B3 SINE B2 1 210 -6 7 1195 872 322 34 11 chr3 79973227 79973494 -79626289 + B4A SINE B4 19 291 -1 7 1195 655 319 52 82 chr3 79973714 79974314 -79625469 - Lx8 LINE L1 -6 7467 6886 7 1195 415 229 18 37 chr3 79974308 79974417 -79625366 - Lx8 LINE L1 -1064 6409 6303 7 1195 183 314 129 21 chr3 79974576 79974716 -79625067 - L2 LINE L2 -658 2761 2607 7 1195 433 247 0 0 chr3 79975229 79975326 -79624457 + Lx8 LINE L1 6423 6519 -954 7 1195 261 0 0 0 chr3 79975473 79975502 -79624281 + (TAAA)n Simple_repeat Simple_repeat 1 29 0 7 1195 512 247 118 26 chr3 79976614 79976809 -79622974 + B3 SINE B2 4 216 0 7 1195 6713 86 10 1 chr3 79977327 79978433 -79621350 - L1_Mus1 LINE L1 -582 5985 4866 7 1195 3845 60 0 2 chr3 79978438 79978909 -79620874 + L1_Mus1 LINE L1 6095 6564 -3 7 1195 1123 210 134 22 chr3 79979151 79979472 -79620311 - MTD LTR MaLR 0 419 63 7 1195 1862 285 107 63 chr3 79979515 79980256 -79619527 - MTC-int LTR MaLR -4 1254 465 7 1195 587 14 14 0 chr3 79980256 79980328 -79619455 + (TC)n Simple_repeat Simple_repeat 2 74 0 7 1195 1862 285 107 63 chr3 79980328 79980489 -79619294 - MTC-int LTR MaLR -794 464 312 7 1195 528 267 142 24 chr3 79980477 79980646 -79619137 - MTD LTR MaLR -10 397 209 7 1195 39 0 0 0 chr3 79980719 79980758 -79619025 + AT_rich Low_complexity Low_complexity 1 39 0 7 1195 553 266 80 9 chr3 79980759 79980941 -79618842 - MTD LTR MaLR -219 200 1 7 1195 932 66 229 38 chr3 79980973 79981130 -79618653 + B2_Mm2 SINE B2 2 188 -7 7 1195 239 276 0 0 chr3 79981628 79981686 -79618097 + B4A SINE B4 1 58 -234 7 1195 266 344 98 30 chr3 79982005 79982137 -79617646 + B4 SINE B4 1 141 -151 7 1195 265 382 16 0 chr3 79982556 79982679 -79617104 - L2 LINE L2 -905 2514 2390 7 1195 227 29 0 54 chr3 79982790 79982827 -79616956 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 7 1195 648 244 15 0 chr3 79982830 79982961 -79616822 - B1_Mus2 SINE Alu -14 133 1 7 1195 21 0 0 0 chr3 79982976 79982997 -79616786 + AT_rich Low_complexity Low_complexity 1 21 0 7 1195 273 288 17 0 chr3 79985030 79985089 -79614694 + tRNA-Ala-GCY_ tRNA tRNA 10 69 -6 7 1195 689 107 0 0 chr3 79986132 79986235 -79613548 - L1_Mur2 LINE L1 -486 5391 5289 7 1195 1276 79 42 5 chr3 79986235 79986426 -79613357 + L1_Mus4 LINE L1 6438 6635 -1 7 1195 388 337 46 0 chr3 79986814 79986989 -79612794 - Lx8 LINE L1 -56 7417 7235 7 1195 6385 138 3 2 chr3 79987746 79988832 -79610951 - L1_Mur2 LINE L1 -882 4995 3909 7 1195 6203 115 35 10 chr3 79988830 79989833 -79609950 + Lx LINE L1 5627 6654 0 7 1195 190 338 140 47 chr3 79990007 79990221 -79609562 - L2 LINE L2 -351 3068 2835 7 1195 845 89 8 0 chr3 79990350 79990474 -79609309 + (TTCC)n Simple_repeat Simple_repeat 3 127 0 7 1195 463 266 148 0 chr3 79991408 79991577 -79608206 + MIRb SINE MIR 70 263 -5 7 1195 252 0 0 0 chr3 79991818 79991846 -79607937 + (TCTG)n Simple_repeat Simple_repeat 3 30 0 7 1195 374 374 144 28 chr3 79992564 79993621 -79606162 + L2a LINE L2 2235 3425 -1 7 1195 552 304 32 68 chr3 79995396 79995615 -79604168 - B3A SINE B2 0 216 6 7 1195 615 332 70 0 chr3 79996324 79996511 -79603272 - B4A SINE B4 -2 290 91 7 1195 192 179 0 0 chr3 79996968 79997007 -79602776 + T-rich Low_complexity Low_complexity 1 39 0 7 1195 3813 75 55 21 chr3 79997007 79997623 -79602160 - MusHAL1 LINE L1 0 2712 2076 7 1195 2868 141 70 36 chr3 79997619 79997905 -79601878 - L1VL4 LINE L1 -5531 771 485 7 1195 1251 86 17 0 chr3 79997905 79998079 -79601704 + B2_Mm1a SINE B2 1 177 -16 7 1195 450 0 0 0 chr3 79998079 79998129 -79601654 + (GAA)n Simple_repeat Simple_repeat 2 51 0 7 1195 2868 141 70 36 chr3 79998129 79998399 -79601384 - L1VL4 LINE L1 -5818 484 196 7 1195 704 174 0 61 chr3 80000183 80000330 -79599453 + URR1B DNA MER1_type 88 225 0 1 1195 491 0 17 0 chr3 80001309 80001368 -79598415 + (GA)n Simple_repeat Simple_repeat 1 60 0 2 1195 216 0 0 0 chr3 80001584 80001608 -79598175 + (TG)n Simple_repeat Simple_repeat 2 25 0 3 1195 7057 37 14 0 chr3 80001684 80002582 -79597201 - L1Md_T LINE L1 0 6582 5672 4 1195 207 0 0 0 chr3 80002847 80002870 -79596913 + (T)n Simple_repeat Simple_repeat 1 23 0 5 1195 378 298 53 8 chr3 80002909 80003041 -79596742 - RMER5 LTR ERV1 -347 187 50 6 1195 315 0 0 0 chr3 80004491 80004526 -79595257 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 7 1195 688 10 19 29 chr3 80005176 80005280 -79594503 + (TCTA)n Simple_repeat Simple_repeat 2 104 0 8 1195 1503 102 59 13 chr3 80005357 80005596 -79594187 - L1Md_F2 LINE L1 0 6582 6333 9 1195 560 344 51 5 chr3 80005913 80006109 -79593674 + B3 SINE B2 5 209 -7 1 1195 6347 93 1 11 chr3 80006457 80007392 -79592391 - Lx3_Mus LINE L1 -419 6590 5665 1 1195 2850 93 7 5 chr3 80007392 80007801 -79591982 + Lx3_Mus LINE L1 6588 6997 -12 1 1195 204 259 0 36 chr3 80007981 80008037 -79591746 + GA-rich Low_complexity Low_complexity 1 54 0 1 1195 207 100 0 0 chr3 80008465 80008495 -79591288 + (T)n Simple_repeat Simple_repeat 1 30 0 1 1195 21 0 0 0 chr3 80008577 80008598 -79591185 + AT_rich Low_complexity Low_complexity 1 21 0 1 1195 807 288 120 25 chr3 80010126 80010478 -79589305 + Lx9 LINE L1 7087 7473 -171 1 1195 788 30 10 0 chr3 80010478 80010577 -79589206 + (TG)n Simple_repeat Simple_repeat 1 100 0 1 1195 807 288 120 25 chr3 80010577 80010708 -79589075 + Lx9 LINE L1 7474 7616 -28 1 1195 210 37 0 0 chr3 80012133 80012160 -79587623 + (CAGTA)n Simple_repeat Simple_repeat 2 28 0 1 1195 564 329 97 90 chr3 80013702 80014146 -79585637 - MLT1C LTR MaLR 0 467 21 1 1195 315 356 0 0 chr3 80014273 80014377 -79585406 + PB1D10 SINE Alu 1 104 -13 1 1195 230 56 0 27 chr3 80014377 80014414 -79585369 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 2 1195 963 89 0 0 chr3 80014772 80014907 -79584876 + (TTCC)n Simple_repeat Simple_repeat 4 138 0 2 1195 296 269 10 41 chr3 80015904 80016001 -79583782 + C-rich Low_complexity Low_complexity 5 98 0 2 1195 342 278 0 8 chr3 80016331 80016458 -79583325 + HAL1-2a_MD LINE L1 2366 2491 -533 2 1195 649 222 84 26 chr3 80016793 80017071 -79582712 - MT2A LTR ERVL -165 328 2 2 1195 216 0 0 0 chr3 80017416 80017440 -79582343 + (TTTA)n Simple_repeat Simple_repeat 4 27 0 2 1195 7393 139 34 7 chr3 80017440 80018627 -79581156 - Lx4A LINE L1 -11 7047 5829 2 1195 270 307 26 26 chr3 80018646 80018763 -79581020 + PB1D10 SINE Alu 1 117 0 2 1195 338 167 106 0 chr3 80018765 80018831 -79580952 + ID4_ SINE ID 2 74 -9 2 1195 745 198 97 67 chr3 80019315 80019510 -79580273 - ORR1C1 LTR MaLR -176 202 2 2 1195 3071 85 2 2 chr3 80019550 80019964 -79579819 + L1_Mus1 LINE L1 6154 6567 0 3 1195 254 161 16 31 chr3 80019968 80020032 -79579751 + A-rich Low_complexity Low_complexity 1 63 0 3 1195 328 279 135 0 chr3 80020495 80020599 -79579184 + MER2 DNA MER2_type 1 118 -227 3 1195 399 135 0 51 chr3 80020787 80020904 -79578879 + (TCTCTG)n Simple_repeat Simple_repeat 6 116 0 3 1195 191 416 10 0 chr3 80021003 80021104 -79578679 - L2a LINE L2 -2 3424 3323 3 1195 23 0 0 0 chr3 80022473 80022496 -79577287 + AT_rich Low_complexity Low_complexity 1 23 0 3 1195 5944 150 22 76 chr3 80022496 80023656 -79576127 - Lx4A LINE L1 0 7058 5961 3 1195 1329 94 0 0 chr3 80023658 80023849 -79575934 + Lx4A LINE L1 5755 5945 -1113 3 1195 6156 122 26 4 chr3 80023868 80024802 -79574981 - RMER17B LTR ERVK -1 957 4 3 1195 222 136 0 22 chr3 80025528 80025573 -79574210 + A-rich Low_complexity Low_complexity 2 45 0 3 1195 492 18 0 0 chr3 80026278 80026335 -79573448 + (GA)n Simple_repeat Simple_repeat 2 58 0 3 1195 408 334 147 27 chr3 80026335 80026846 -79572937 + L1MEc LINE L1 1028 1599 -4801 4 1195 418 285 161 25 chr3 80026848 80027251 -79572532 - L1MA6 LINE L1 0 6300 5843 4 1195 11045 103 14 14 chr3 80027533 80029390 -79570393 - MusHAL1 LINE L1 -825 1887 30 4 1195 6758 84 9 2 chr3 80029367 80030654 -79569129 - L1Md_F2 LINE L1 0 6582 5286 4 1195 3585 63 0 0 chr3 80030663 80031110 -79568673 - L1Md_F2 LINE L1 -5 6577 6131 4 1195 12210 87 21 8 chr3 80031110 80033535 -79566248 - L1Md_F2 LINE L1 -2847 3036 580 4 1195 2094 121 2 112 chr3 80033547 80033724 -79566059 - L1VL4 LINE L1 -5397 905 767 4 1195 1082 83 7 0 chr3 80033724 80033868 -79565915 - B1_Mm SINE Alu 0 147 3 4 1195 2094 121 2 112 chr3 80033868 80034183 -79565600 - L1VL4 LINE L1 -5536 766 467 4 1195 4123 218 89 33 chr3 80034263 80036212 -79563571 + Lx2B LINE L1 4960 6991 -9 4 1195 269 252 191 27 chr3 80036229 80036527 -79563256 - L1MC2 LINE L1 -289 6055 5709 4 1195 387 308 58 58 chr3 80036548 80036686 -79563097 + RSINE1 SINE B4 1 138 -27 4 1195 334 318 99 33 chr3 80036704 80036886 -79562897 - L1MC2 LINE L1 -1200 4946 4753 4 1195 905 231 41 32 chr3 80037547 80037766 -79562017 - Lx5 LINE L1 -1 7049 6829 5 1195 494 319 157 35 chr3 80037766 80038143 -79561640 + RMER5 LTR ERV1 92 514 -20 5 1195 22 94 0 0 chr3 80038519 80038583 -79561200 + AT_rich Low_complexity Low_complexity 1 64 0 5 1195 410 357 60 41 chr3 80039690 80039956 -79559827 + MLT1E2 LTR MaLR 40 310 -317 5 1195 303 318 132 89 chr3 80040009 80040358 -79559425 - ORR1E LTR MaLR -7 371 8 5 1195 465 125 30 48 chr3 80040368 80040536 -79559247 + CT-rich Low_complexity Low_complexity 3 167 0 5 1195 262 310 0 42 chr3 80040536 80040584 -79559199 - LSU-rRNA_Hsa rRNA rRNA -1912 3123 3079 5 1195 321 26 0 0 chr3 80040584 80040622 -79559161 + (CA)n Simple_repeat Simple_repeat 1 38 0 5 1195 262 310 0 42 chr3 80040622 80040691 -79559092 - LSU-rRNA_Hsa rRNA rRNA -1957 3078 3011 5 1195 259 297 85 24 chr3 80040735 80040949 -79558834 + MLT1E2 LTR MaLR 431 680 0 5 1195 1427 244 143 58 chr3 80041200 80041440 -79558343 + L1Md_F2 LINE L1 272 512 -6129 5 1195 3803 65 2 16 chr3 80041440 80041944 -79557839 - L1Md_F2 LINE L1 0 6582 6086 5 1195 33297 59 12 5 chr3 80041944 80046936 -79552847 + L1Md_F2 LINE L1 513 5589 -297 5 1195 7949 51 7 1 chr3 80046936 80047925 -79551858 + L1Md_F2 LINE L1 5590 6584 -1 5 1195 304 296 125 7 chr3 80048600 80048736 -79551047 - HAL1-3A_ME LINE L1 -420 2438 2287 6 1195 645 14 0 0 chr3 80049109 80049183 -79550600 + (TTTC)n Simple_repeat Simple_repeat 3 76 0 6 1195 486 0 0 0 chr3 80050341 80050395 -79549388 + (GA)n Simple_repeat Simple_repeat 1 54 0 6 1195 352 204 69 138 chr3 80050712 80050871 -79548912 - MER57C2 LTR ERV1 -199 235 88 6 1195 1100 293 19 4 chr3 80050867 80051134 -79548649 + B4 SINE B4 16 286 -6 6 1195 417 103 0 0 chr3 80051162 80051230 -79548553 + (CA)n Simple_repeat Simple_repeat 2 69 0 6 1195 502 202 10 20 chr3 80051239 80051340 -79548443 - MER57C2 LTR ERV1 -332 102 3 6 1195 279 0 0 0 chr3 80051667 80051698 -79548085 + (TC)n Simple_repeat Simple_repeat 2 32 0 6 1195 180 0 0 0 chr3 80053271 80053291 -79546492 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 6 1195 325 180 17 43 chr3 80053479 80053548 -79546235 + RMER17A LTR ERVK 345 412 -339 6 1195 678 126 0 0 chr3 80053548 80053683 -79546100 + (CA)n Simple_repeat Simple_repeat 1 135 0 6 1195 325 180 17 43 chr3 80053683 80053729 -79546054 + RMER17A LTR ERVK 413 456 -295 6 1195 21 0 0 0 chr3 80054908 80054929 -79544854 + AT_rich Low_complexity Low_complexity 1 21 0 7 1195 890 241 58 78 chr3 80055628 80055879 -79543904 - ORR1D1 LTR MaLR 0 374 141 7 1195 338 0 24 0 chr3 80055879 80055921 -79543862 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 7 1195 890 241 58 78 chr3 80055921 80056051 -79543732 - ORR1D1 LTR MaLR -234 140 1 7 1195 23 86 0 0 chr3 80056756 80056814 -79542969 + AT_rich Low_complexity Low_complexity 1 58 0 7 1195 21 36 0 0 chr3 80057121 80057149 -79542634 + AT_rich Low_complexity Low_complexity 1 28 0 7 1195 399 157 0 0 chr3 80057513 80057583 -79542200 + (TA)n Simple_repeat Simple_repeat 2 71 0 7 1195 258 283 71 61 chr3 80059080 80059178 -79540605 - PB1D10 SINE Alu -8 109 11 7 1195 39 88 0 0 chr3 80061712 80061814 -79537969 + AT_rich Low_complexity Low_complexity 1 102 0 7 1195 934 106 20 60 chr3 80061824 80061975 -79537808 - B1_Mus1 SINE Alu -1 147 3 7 1195 724 255 68 99 chr3 80062123 80062445 -79537338 + ORR1D2 LTR MaLR 53 373 -6 7 1195 2836 67 5 5 chr3 80062441 80062818 -79536965 + MTB LTR MaLR 24 400 0 8 1195 6655 101 30 77 chr3 80062820 80063970 -79535813 + MTB-int LTR MaLR 3 1098 0 8 1195 2984 81 10 0 chr3 80063970 80064366 -79535417 + MTB LTR MaLR 1 400 0 8 1195 1608 219 86 11 chr3 80064610 80064983 -79534800 + MTD LTR MaLR 1 401 -18 8 1195 360 314 110 52 chr3 80066115 80066481 -79533302 - MLT1D LTR MaLR -2 503 69 8 1195 441 0 0 0 chr3 80066825 80066874 -79532909 + (CA)n Simple_repeat Simple_repeat 2 50 0 8 1195 214 298 72 88 chr3 80067566 80067577 -79532206 + MIRb SINE MIR 40 50 -218 8 1195 386 127 0 27 chr3 80067577 80067696 -79532087 - L1Md_F2 LINE L1 0 6582 6493 8 1195 214 322 52 76 chr3 80067696 80067895 -79531888 + MIRb SINE MIR 51 242 -26 8 1195 24 0 0 0 chr3 80067910 80067934 -79531849 + AT_rich Low_complexity Low_complexity 1 24 0 8 1195 390 300 43 40 chr3 80068187 80068440 -79531343 - L1ME2 LINE L1 -234 5930 5677 8 1195 265 305 89 25 chr3 80068752 80068910 -79530873 - L1M4 LINE L1 -1839 4307 4140 8 1195 5688 96 11 55 chr3 80069046 80069682 -79530101 + L1VL2 LINE L1 191 823 -5512 8 1195 1238 48 0 0 chr3 80069682 80069828 -79529955 + B1_Mm SINE Alu 2 147 0 9 1195 12213 106 21 26 chr3 80069828 80071732 -79528051 + L1VL2 LINE L1 824 2718 -897 8 1195 1193 50 0 0 chr3 80071732 80071873 -79527910 + B1_Mm SINE Alu 1 141 -6 9 1195 12213 108 23 21 chr3 80071873 80071923 -79527860 + L1VL2 LINE L1 2719 2775 -840 8 1195 1061 103 0 0 chr3 80071923 80072069 -79527714 + B1_Mus1 SINE Alu 3 148 0 9 1195 12213 108 23 21 chr3 80072069 80072308 -79527475 + L1VL2 LINE L1 2776 2986 -629 8 1195 4239 55 0 0 chr3 80072775 80073307 -79526476 - L1_Mm LINE L1 -477 5406 4875 9 1195 303 28 0 0 chr3 80073400 80073436 -79526347 + (TG)n Simple_repeat Simple_repeat 1 36 0 9 1195 318 259 135 103 chr3 80073771 80074090 -79525693 - Lx7 LINE L1 -2 7694 7366 9 1195 1749 139 7 19 chr3 80074097 80074579 -79525204 - RMER19A LTR ERVK 0 737 220 9 1195 474 49 0 0 chr3 80074574 80074635 -79525148 - RMER19A LTR ERVK -674 63 3 9 1195 4894 234 43 15 chr3 80074646 80075771 -79524012 - Lx7 LINE L1 -344 7352 6193 9 1195 240 35 0 0 chr3 80075771 80075800 -79523983 + (TTTA)n Simple_repeat Simple_repeat 4 32 0 9 1195 19872 132 89 11 chr3 80075800 80081627 -79518156 - Lx3A LINE L1 -15 6966 13 9 1195 2371 221 71 55 chr3 80081622 80082589 -79517194 - Lx7 LINE L1 -1273 6187 5169 9 1195 369 353 59 51 chr3 80082710 80082964 -79516819 + L1MEf LINE L1 574 829 -5371 1 1195 611 280 53 5 chr3 80083216 80083406 -79516377 + MER82 DNA MER2_type 26 224 -429 1 1195 296 339 0 0 chr3 80083833 80083948 -79515835 - PB1D10 SINE Alu 0 117 3 1 1195 546 235 3 5 chr3 80084056 80084174 -79515609 + Lx4B LINE L1 6826 6959 -99 1 1195 448 227 67 52 chr3 80084277 80084412 -79515371 + MER82 DNA MER2_type 202 338 -315 1 1195 549 0 0 0 chr3 80084605 80084666 -79515117 + (CA)n Simple_repeat Simple_repeat 2 62 0 1 1195 315 105 0 0 chr3 80084666 80084723 -79515060 + (GA)n Simple_repeat Simple_repeat 1 57 0 1 1196 538 306 136 40 chr3 80085025 80085297 -79514486 + MER82 DNA MER2_type 349 646 -7 1 1196 2071 172 0 0 chr3 80085688 80086008 -79513775 + Lx5 LINE L1 6146 6465 -585 1 1196 404 346 124 0 chr3 80086529 80086682 -79513101 + B3A SINE B2 21 192 -6 1 1196 1926 229 51 36 chr3 80086772 80087297 -79512486 - RMER19C LTR ERVK 0 611 79 1 1196 180 0 0 0 chr3 80089731 80089751 -79510032 + (CAAAAA)n Simple_repeat Simple_repeat 3 22 0 1 1196 23 0 0 0 chr3 80089760 80089783 -79510000 + AT_rich Low_complexity Low_complexity 1 23 0 1 1196 449 76 0 15 chr3 80090991 80091058 -79508725 + (TAA)n Simple_repeat Simple_repeat 1 66 0 1 1196 198 274 26 52 chr3 80091541 80091618 -79508165 - MIRb SINE MIR -192 76 2 1 1196 312 27 0 0 chr3 80091759 80091796 -79507987 + (CA)n Simple_repeat Simple_repeat 1 37 0 1 1196 656 313 116 49 chr3 80093021 80093350 -79506433 + MLT1A LTR MaLR 3 353 -21 1 1196 261 0 0 0 chr3 80093798 80093827 -79505956 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 1 1196 478 356 43 0 chr3 80094163 80094351 -79505432 + RMER15 LTR ERVL 378 573 -2 1 1196 492 48 0 0 chr3 80094671 80094734 -79505049 + (TG)n Simple_repeat Simple_repeat 2 64 0 1 1196 356 307 21 35 chr3 80094749 80094891 -79504892 - RSINE1 SINE B4 -24 141 2 1 1196 800 251 24 47 chr3 80095132 80095345 -79504438 + MTE2b LTR MaLR 172 379 0 1 1196 477 298 0 18 chr3 80095467 80095638 -79504145 + L1MA8 LINE L1 5828 5995 -296 1 1196 5779 140 26 22 chr3 80095865 80096827 -79502956 + Lx4A LINE L1 6093 7058 0 1 1196 12545 86 22 32 chr3 80098093 80101259 -79498524 + Lx3_Mus LINE L1 4035 7009 0 1 1196 3465 117 2 1 chr3 80101379 80102354 -79497429 - L1Md_A LINE L1 -4165 1718 742 1 1196 232 213 21 0 chr3 80102360 80102407 -79497376 - L1Md_A LINE L1 -6315 301 254 1 1196 327 86 0 147 chr3 80102423 80102491 -79497292 - L1_Mur1 LINE L1 -1669 4217 4160 1 1196 11025 94 4 2 chr3 80102489 80104762 -79495021 + L1_Mus1 LINE L1 4292 6566 -1 1 1196 503 94 35 0 chr3 80105336 80105421 -79494362 + Lx2 LINE L1 6904 6991 -6 1 1196 189 0 0 0 chr3 80105421 80105442 -79494341 + (TAA)n Simple_repeat Simple_repeat 1 21 0 1 1196 198 103 0 0 chr3 80106131 80106160 -79493623 + (A)n Simple_repeat Simple_repeat 1 29 0 1 1196 380 167 8 0 chr3 80106269 80106389 -79493394 + A-rich Low_complexity Low_complexity 4 124 0 1 1196 1196 126 16 11 chr3 80106400 80106585 -79493198 + B2_Mm2 SINE B2 2 187 -8 1 1196 24 32 0 0 chr3 80107785 80107816 -79491967 + AT_rich Low_complexity Low_complexity 1 31 0 1 1196 522 272 77 16 chr3 80108670 80108853 -79490930 - MER44B DNA MER2_type -14 536 343 1 1196 255 294 47 12 chr3 80109259 80109345 -79490438 - MER44B DNA MER2_type -357 193 105 1 1196 411 242 0 0 chr3 80109497 80109617 -79490166 + (CA)n Simple_repeat Simple_repeat 1 120 0 1 1196 301 206 48 0 chr3 80109648 80109711 -79490072 + Lx7 LINE L1 6688 6753 -943 1 1196 233 159 0 0 chr3 80109710 80109754 -79490029 - RMER1C Other Other -3 1339 1296 1 1196 209 143 60 0 chr3 80110373 80110457 -79489326 + (CAAA)n Simple_repeat Simple_repeat 2 90 0 1 1196 422 238 28 37 chr3 80110482 80110591 -79489192 + Lx7 LINE L1 6646 6753 -943 1 1196 760 213 38 47 chr3 80110590 80110802 -79488981 - RMER1C Other Other -3 1339 1130 1 1196 573 200 0 0 chr3 80110834 80110939 -79488844 + RLTR14 LTR ERV1 3 107 -275 1 1196 2569 187 18 14 chr3 80113123 80113611 -79486172 + Lx4A LINE L1 6568 7057 -1 1 1196 297 0 0 0 chr3 80115494 80115527 -79484256 + (TG)n Simple_repeat Simple_repeat 1 33 0 1 1196 347 253 146 76 chr3 80115616 80115787 -79483996 + L1MCa LINE L1 483 665 -5843 1 1196 5513 190 34 17 chr3 80117043 80118584 -79481199 + L1_Mur2 LINE L1 882 2445 -3432 1 1196 1246 136 23 0 chr3 80118587 80118801 -79480982 + Lx4B LINE L1 5145 5363 -514 1 1196 4415 143 33 7 chr3 80118794 80119561 -79480222 - L1_Mm LINE L1 -814 5069 4283 1 1196 1032 119 0 0 chr3 80119561 80119720 -79480063 + (TTC)n Simple_repeat Simple_repeat 2 160 0 1 1196 1761 117 1 48 chr3 80119746 80120056 -79479727 + Lx LINE L1 6311 6653 -1 1 1196 8148 152 37 18 chr3 80120073 80121344 -79478439 + Lx4B LINE L1 5350 6673 -385 1 1196 1138 68 0 0 chr3 80121344 80121491 -79478292 + B1_Mus2 SINE Alu 1 147 0 1 1196 8148 150 37 21 chr3 80121491 80121507 -79478276 + Lx4B LINE L1 6674 6682 -376 1 1196 1113 116 0 0 chr3 80121507 80121680 -79478103 + (GAA)n Simple_repeat Simple_repeat 2 174 0 1 1196 8148 150 37 21 chr3 80121680 80122068 -79477715 + Lx4B LINE L1 6683 7058 0 1 1196 1649 229 109 72 chr3 80122323 80122944 -79476839 - Lx7 LINE L1 -6 7690 7047 1 1196 2972 192 34 11 chr3 80122940 80123696 -79476087 + Lx6 LINE L1 5313 6080 -1380 1 1196 207 0 0 0 chr3 80123697 80123720 -79476063 + (TG)n Simple_repeat Simple_repeat 1 23 0 1 1196 251 165 59 25 chr3 80124067 80124185 -79475598 + (TATATG)n Simple_repeat Simple_repeat 1 122 0 1 1196 281 406 88 32 chr3 80124765 80125073 -79474710 - LTR33 LTR ERVL -173 342 18 1 1196 354 214 0 0 chr3 80126638 80126727 -79473056 + CT-rich Low_complexity Low_complexity 3 91 0 1 1196 551 317 76 62 chr3 80127672 80127961 -79471822 - Cheshire DNA MER1_type -2127 293 1 1 1196 700 295 48 10 chr3 80128948 80129157 -79470626 - MER20 DNA MER1_type -2 217 1 1 1196 414 0 0 0 chr3 80130241 80130287 -79469496 + (CA)n Simple_repeat Simple_repeat 2 47 0 1 1196 273 29 0 0 chr3 80130289 80130323 -79469460 + (CAGAGA)n Simple_repeat Simple_repeat 4 37 0 1 1196 268 226 12 81 chr3 80130323 80130444 -79469339 - RMER17D2 LTR ERVK -327 482 368 1 1196 195 129 0 0 chr3 80130444 80130475 -79469308 + (CAGG)n Simple_repeat Simple_repeat 1 31 0 1 1196 268 226 12 81 chr3 80130475 80130599 -79469184 - RMER17D2 LTR ERVK -442 367 255 1 1196 309 294 30 141 chr3 80130903 80131137 -79468646 - RMER4A LTR ERVK -251 215 8 1 1196 1789 317 85 30 chr3 80131437 80133017 -79466766 - L1_Mur3 LINE L1 -57 5823 4158 1 1196 498 236 90 23 chr3 80133345 80133529 -79466254 - ORR1B1 LTR MaLR -155 239 8 1 1196 318 167 30 0 chr3 80133501 80133567 -79466216 - ORR1B1 LTR MaLR -326 68 1 1 1196 412 233 12 0 chr3 80133567 80133653 -79466130 - Lx6 LINE L1 -846 6614 6528 1 1196 1532 292 23 38 chr3 80133657 80134084 -79465699 - RMER1C Other Other -435 907 487 1 1196 400 171 0 0 chr3 80134091 80134167 -79465616 - L1_Mur3 LINE L1 -4269 1611 1536 1 1196 315 240 172 8 chr3 80134188 80134310 -79465473 - L1_Mur3 LINE L1 -7215 513 372 1 1196 334 242 164 0 chr3 80134351 80134479 -79465304 - RMER20A LTR ERVK -236 280 132 1 1196 180 278 96 43 chr3 80135813 80135907 -79463876 - MIR SINE MIR -109 153 55 1 1196 216 77 0 55 chr3 80136561 80136616 -79463167 + (TTTTTG)n Simple_repeat Simple_repeat 3 54 0 1 1196 545 194 18 6 chr3 80136991 80137162 -79462621 + (TA)n Simple_repeat Simple_repeat 1 173 0 1 1196 388 309 129 8 chr3 80137614 80137862 -79461921 + B4A SINE B4 1 278 -14 1 1196 366 304 6 37 chr3 80137875 80138039 -79461744 + (CATATA)n Simple_repeat Simple_repeat 6 164 0 1 1196 900 268 141 27 chr3 80138246 80138580 -79461203 - MTEa LTR MaLR -7 372 1 1 1196 836 261 19 5 chr3 80139281 80139493 -79460290 + B3 SINE B2 2 216 0 1 1196 403 297 24 72 chr3 80139674 80139841 -79459942 + RSINE1 SINE B4 3 161 -4 1 1196 357 24 0 0 chr3 80141892 80141934 -79457849 + (TC)n Simple_repeat Simple_repeat 2 43 0 1 1196 216 0 0 0 chr3 80142912 80142936 -79456847 + (TG)n Simple_repeat Simple_repeat 2 25 0 1 1196 531 0 0 0 chr3 80142965 80143024 -79456759 + (TA)n Simple_repeat Simple_repeat 1 59 0 1 1196 333 0 0 0 chr3 80143024 80143060 -79456723 + (GA)n Simple_repeat Simple_repeat 2 38 0 1 1196 591 53 0 0 chr3 80143564 80143639 -79456144 + (TCTA)n Simple_repeat Simple_repeat 4 78 0 1 1196 28406 91 12 15 chr3 80143643 80148478 -79451305 - L1Md_F2 LINE L1 -17 6565 1748 1 1196 25 65 0 0 chr3 80148796 80148842 -79450941 + AT_rich Low_complexity Low_complexity 1 46 0 1 1196 342 0 0 0 chr3 80148939 80148977 -79450806 + (TC)n Simple_repeat Simple_repeat 1 38 0 1 1196 369 0 0 0 chr3 80148977 80149017 -79450766 + (CA)n Simple_repeat Simple_repeat 1 41 0 1 1196 519 45 0 0 chr3 80149022 80149088 -79450695 + (GA)n Simple_repeat Simple_repeat 1 66 0 1 1196 423 294 142 49 chr3 80149186 80149637 -79450146 - L1MA4 LINE L1 -382 5918 5426 1 1196 285 171 73 0 chr3 80149647 80149729 -79450054 + (TCTA)n Simple_repeat Simple_repeat 1 88 0 1 1196 450 0 0 0 chr3 80149729 80149779 -79450004 + (TG)n Simple_repeat Simple_repeat 2 51 0 1 1196 333 371 16 16 chr3 80149793 80149919 -79449864 - RSINE1 SINE B4 -34 131 6 1 1196 1857 313 80 39 chr3 80149937 80151471 -79448312 - L1MA4 LINE L1 -861 5430 3835 1 1196 237 286 33 11 chr3 80151524 80151616 -79448167 + L1M2 LINE L1 2981 3074 -3069 1 1196 2267 89 6 3 chr3 80152491 80152806 -79446977 - L1_Mus1 LINE L1 0 6567 6252 1 1196 37946 29 0 0 chr3 80153184 80159672 -79440111 - L1Md_T LINE L1 0 6585 1 1 1196 585 194 0 0 chr3 80160590 80160745 -79439038 + CT-rich Low_complexity Low_complexity 2 156 0 1 1196 207 0 0 0 chr3 80160745 80160768 -79439015 + (CA)n Simple_repeat Simple_repeat 1 23 0 1 1196 7670 219 49 29 chr3 80160822 80163190 -79436593 - Lx7 LINE L1 -2 7694 5281 1 1196 9572 38 7 0 chr3 80163195 80165012 -79434771 - L1Md_F2 LINE L1 -13 6569 4735 1 1196 2195 198 29 24 chr3 80165008 80165500 -79434283 - Lx7 LINE L1 -598 5282 4789 1 1196 3174 183 85 59 chr3 80165492 80166469 -79433314 - Lx7 LINE L1 -2498 3382 2381 1 1196 3301 180 126 15 chr3 80166442 80167791 -79431992 - Lx7 LINE L1 -3819 2061 553 1 1196 642 272 79 59 chr3 80168814 80169017 -79430766 - B3 SINE B2 0 216 10 1 1196 450 88 0 0 chr3 80169381 80169449 -79430334 + (CA)n Simple_repeat Simple_repeat 1 68 0 1 1196 293 119 53 21 chr3 80169449 80169543 -79430240 + (TTATA)n Simple_repeat Simple_repeat 1 97 0 2 1196 243 302 23 0 chr3 80169575 80169661 -79430122 - L1MD3 LINE L1 -395 7600 7513 2 1196 180 111 0 0 chr3 80171027 80171054 -79428729 + (CAAGA)n Simple_repeat Simple_repeat 2 28 0 2 1196 198 0 0 0 chr3 80171054 80171076 -79428707 + (CCAA)n Simple_repeat Simple_repeat 2 23 0 2 1196 1702 125 19 4 chr3 80171391 80171656 -79428127 + RLTR13D6 LTR ERVK 1 269 -633 2 1196 1568 261 9 0 chr3 80171670 80171999 -79427784 - RMER1B Other Other -728 338 7 2 1196 522 0 0 0 chr3 80172692 80172750 -79427033 + (TA)n Simple_repeat Simple_repeat 2 59 0 2 1196 26 0 0 0 chr3 80173031 80173057 -79426726 + AT_rich Low_complexity Low_complexity 1 26 0 2 1196 329 264 71 26 chr3 80174061 80174174 -79425609 + Lx2B LINE L1 6879 6996 -4 2 1196 892 252 20 16 chr3 80174440 80174694 -79425089 - Lx9 LINE L1 -168 7476 7222 2 1196 4155 171 61 46 chr3 80174712 80175652 -79424131 - RMER17B LTR ERVK 0 958 5 2 1196 674 230 57 62 chr3 80175662 80175889 -79423894 + Lx9 LINE L1 6843 7068 -576 2 1196 490 15 30 0 chr3 80175891 80175958 -79423825 + (TTTTTG)n Simple_repeat Simple_repeat 2 70 0 2 1196 666 164 66 15 chr3 80175958 80176094 -79423689 + Lx9 LINE L1 7077 7219 -425 2 1196 1367 186 39 4 chr3 80176202 80176461 -79423322 + RLTR11A2 LTR ERVK 260 527 0 2 1196 279 71 0 0 chr3 80176638 80176680 -79423103 + (T)n Simple_repeat Simple_repeat 1 42 0 2 1196 266 359 13 0 chr3 80177206 80177284 -79422499 + PB1D10 SINE Alu 10 88 -29 2 1196 429 20 0 0 chr3 80177297 80177347 -79422436 + (TAGA)n Simple_repeat Simple_repeat 1 50 0 2 1196 3277 172 112 5 chr3 80178973 80179623 -79420160 - RMER6D LTR ERVK 0 720 1 2 1196 2024 156 100 30 chr3 80179628 80180057 -79419726 + RMER6B LTR ERVK 1 459 -2 2 1196 1069 63 7 0 chr3 80180067 80180209 -79419574 + B1_Mus1 SINE Alu 6 148 0 2 1196 330 26 0 0 chr3 80180248 80180287 -79419496 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 2 1196 25659 152 65 74 chr3 80180388 80182504 -79417279 + L1_Mus1 LINE L1 301 2310 -3573 2 1196 976 135 7 0 chr3 80182504 80182645 -79417138 - B1_Mus2 SINE Alu -5 142 1 2 1196 25659 101 70 20 chr3 80182645 80186556 -79413227 + L1_Mus1 LINE L1 2311 6567 0 2 1196 191 0 103 0 chr3 80186579 80186608 -79413175 + (CAAAAA)n Simple_repeat Simple_repeat 3 34 0 2 1196 981 76 8 0 chr3 80186931 80187062 -79412721 + B1_Mus1 SINE Alu 7 138 -10 2 1196 183 42 0 0 chr3 80187062 80187086 -79412697 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2 1196 257 336 81 9 chr3 80188071 80188182 -79411601 - PB1D9 SINE Alu 0 120 2 2 1196 566 45 0 0 chr3 80188444 80188511 -79411272 + L1Md_F2 LINE L1 5520 5586 -297 2 1196 7741 70 4 0 chr3 80188511 80189502 -79410281 + L1Md_F2 LINE L1 5587 6581 -1 2 1196 183 80 0 0 chr3 80189512 80189537 -79410246 + (TAAA)n Simple_repeat Simple_repeat 3 27 0 2 1196 216 67 0 0 chr3 80189539 80189569 -79410214 + (A)n Simple_repeat Simple_repeat 1 30 0 2 1196 400 354 81 71 chr3 80190078 80190388 -79409395 - ORR1E LTR MaLR -4 355 43 2 1196 273 318 127 0 chr3 80190962 80191072 -79408711 + PB1 SINE Alu 2 125 -2 2 1196 22 0 0 0 chr3 80191776 80191798 -79407985 + AT_rich Low_complexity Low_complexity 1 22 0 2 1196 240 209 23 11 chr3 80192071 80192158 -79407625 + CT-rich Low_complexity Low_complexity 5 92 0 2 1196 2838 265 27 34 chr3 80192459 80192599 -79407184 - RMER1C Other Other -2 1340 1196 2 1196 207 0 0 0 chr3 80192599 80192622 -79407161 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2 1196 2838 265 27 34 chr3 80192622 80193247 -79406536 - RMER1C Other Other -147 1195 580 2 1196 896 293 41 17 chr3 80193715 80194007 -79405776 + RMER15 LTR ERVL 276 574 -1 2 1196 35 41 0 0 chr3 80194625 80194674 -79405109 + AT_rich Low_complexity Low_complexity 1 49 0 2 1196 3664 178 42 9 chr3 80194924 80195270 -79404513 + RMER6D LTR ERVK 1 363 -357 2 1196 528 93 0 0 chr3 80195270 80195345 -79404438 + (TG)n Simple_repeat Simple_repeat 1 75 0 2 1196 3664 178 42 9 chr3 80195345 80195695 -79404088 + RMER6D LTR ERVK 364 719 -1 2 1196 1524 164 57 72 chr3 80195948 80196282 -79403501 + ORR1A4 LTR MaLR 1 329 0 2 1196 312 234 109 0 chr3 80196288 80196390 -79403393 + L1M2 LINE L1 3844 3978 -2162 2 1196 1871 293 108 35 chr3 80196381 80198560 -79401223 + Lx8 LINE L1 4438 6773 -700 2 1196 965 108 6 0 chr3 80198572 80198748 -79401035 + (TCTA)n Simple_repeat Simple_repeat 4 180 0 2 1196 287 298 9 9 chr3 80198775 80198884 -79400899 + Lx8 LINE L1 6973 7154 -490 2 1196 636 77 0 0 chr3 80198928 80199019 -79400764 + (CA)n Simple_repeat Simple_repeat 2 92 0 2 1196 622 136 17 0 chr3 80201700 80201818 -79397965 - L1_Mus3 LINE L1 -3 6635 6516 2 1196 1084 302 70 27 chr3 80201869 80202570 -79397213 + L1M2 LINE L1 4624 5354 -789 2 1196 270 160 0 0 chr3 80203397 80203447 -79396336 + CT-rich Low_complexity Low_complexity 2 51 0 2 1196 235 154 19 19 chr3 80203606 80203659 -79396124 + RLTR30 LTR ERV1 322 374 -5 2 1196 399 233 11 43 chr3 80203661 80203755 -79396028 - RSINE1 SINE B4 -72 93 3 2 1196 560 171 0 0 chr3 80203861 80203967 -79395816 - ORR1B1 LTR MaLR -14 380 273 2 1196 812 301 53 46 chr3 80203967 80204378 -79395405 + BGLII_B LTR ERVK 1 414 -27 2 1196 1348 178 105 8 chr3 80204405 80204671 -79395112 - ORR1B1 LTR MaLR -102 292 1 2 1196 26 30 0 0 chr3 80204963 80204996 -79394787 + AT_rich Low_complexity Low_complexity 1 33 0 2 1196 295 333 10 0 chr3 80205076 80205175 -79394608 - MLT1H LTR MaLR 0 549 450 2 1196 279 177 0 0 chr3 80205753 80205815 -79393968 + (TTTG)n Simple_repeat Simple_repeat 3 64 0 2 1196 21 57 0 0 chr3 80206493 80206528 -79393255 + AT_rich Low_complexity Low_complexity 1 35 0 2 1196 557 144 34 14 chr3 80206777 80206925 -79392858 + (TA)n Simple_repeat Simple_repeat 1 151 0 2 1196 563 266 63 25 chr3 80206944 80207183 -79392600 - L1M5 LINE L1 -2204 3942 3695 2 1196 420 321 12 64 chr3 80207812 80207985 -79391798 - RSINE1 SINE B4 0 165 2 2 1196 225 338 43 29 chr3 80208074 80208354 -79391429 + L1M5 LINE L1 2234 2517 -3698 2 1196 1368 129 70 4 chr3 80208369 80208611 -79391172 + Lx LINE L1 6397 6654 0 2 1196 462 335 52 17 chr3 80208758 80209104 -79390679 + L1M2 LINE L1 3931 4288 -1855 2 1196 253 241 11 11 chr3 80209128 80209216 -79390567 + Lx9 LINE L1 7556 7643 -1 2 1196 226 180 20 0 chr3 80209644 80209694 -79390089 + T-rich Low_complexity Low_complexity 3 53 0 2 1196 261 246 58 0 chr3 80209696 80209765 -79390018 - B1F SINE Alu -7 142 70 2 1196 1144 81 0 0 chr3 80210032 80210180 -79389603 - B1_Mus1 SINE Alu 0 148 1 2 1196 22 35 0 0 chr3 80210989 80211018 -79388765 + AT_rich Low_complexity Low_complexity 1 29 0 2 1196 324 0 0 0 chr3 80211063 80211099 -79388684 + (CA)n Simple_repeat Simple_repeat 2 37 0 2 1196 413 127 0 12 chr3 80211142 80211222 -79388561 + (TG)n Simple_repeat Simple_repeat 2 80 0 2 1196 4839 250 97 23 chr3 80211806 80212905 -79386878 - Lx7 LINE L1 0 7696 6515 2 1196 495 0 0 0 chr3 80212905 80212960 -79386823 + (TG)n Simple_repeat Simple_repeat 2 56 0 2 1196 4839 246 99 22 chr3 80212960 80213389 -79386394 - Lx7 LINE L1 -1182 6514 6013 2 1196 591 60 0 0 chr3 80213396 80213480 -79386303 + (GA)n Simple_repeat Simple_repeat 1 84 0 2 1196 319 297 142 25 chr3 80214441 80214759 -79385024 + L1MCc LINE L1 1170 1524 -4899 2 1196 316 310 70 25 chr3 80214911 80215144 -79384639 + L1MCc LINE L1 1879 2130 -4907 2 1196 336 164 0 0 chr3 80215369 80215436 -79384347 + CT-rich Low_complexity Low_complexity 2 68 0 2 1196 310 221 29 0 chr3 80215915 80215983 -79383800 + ID4_ SINE ID 1 70 -13 2 1196 23 54 0 0 chr3 80215988 80216025 -79383758 + AT_rich Low_complexity Low_complexity 1 37 0 2 1197 596 306 91 3 chr3 80216188 80216506 -79383277 - Lx7 LINE L1 -347 5533 5188 2 1197 235 325 0 24 chr3 80217144 80217229 -79382554 + B3A SINE B2 3 85 -113 2 1197 21 0 0 0 chr3 80217603 80217624 -79382159 + AT_rich Low_complexity Low_complexity 1 21 0 2 1197 2370 127 38 35 chr3 80219022 80219448 -79380335 + Lx LINE L1 6226 6652 -2 2 1197 17547 97 23 5 chr3 80219623 80220029 -79379754 - L1VL2 LINE L1 -4 3611 3183 2 1197 510 17 0 0 chr3 80220029 80220088 -79379695 + (TTTTC)n Simple_repeat Simple_repeat 2 60 0 2 1197 17547 96 23 4 chr3 80220088 80222896 -79376887 - L1VL2 LINE L1 -433 3182 334 2 1197 475 264 21 58 chr3 80222921 80223110 -79376673 + Lx7 LINE L1 5611 5805 -1891 2 1197 628 322 0 28 chr3 80223160 80223374 -79376409 - B3 SINE B2 -8 208 1 2 1197 432 136 86 52 chr3 80223698 80223814 -79375969 + Lx LINE L1 6510 6629 -25 2 1197 408 385 0 0 chr3 80223824 80223941 -79375842 + B3A SINE B2 27 143 -55 2 1197 378 0 0 0 chr3 80223950 80223992 -79375791 + (CA)n Simple_repeat Simple_repeat 1 42 0 2 1197 829 347 74 24 chr3 80225220 80225745 -79374038 + Lx8 LINE L1 6860 7445 -28 2 1197 909 0 0 0 chr3 80225935 80226036 -79373747 + (GGGAGA)n Simple_repeat Simple_repeat 3 103 0 2 1197 429 291 101 0 chr3 80227787 80227966 -79371817 - B3A SINE B2 0 198 2 2 1197 21 57 0 0 chr3 80228028 80228063 -79371720 + AT_rich Low_complexity Low_complexity 1 35 0 2 1197 228 250 54 12 chr3 80228179 80228345 -79371438 + (TA)n Simple_repeat Simple_repeat 1 173 0 2 1197 21 0 0 0 chr3 80228442 80228463 -79371320 + AT_rich Low_complexity Low_complexity 1 21 0 2 1197 32 0 0 0 chr3 80228712 80228744 -79371039 + AT_rich Low_complexity Low_complexity 1 32 0 2 1197 325 279 222 11 chr3 80228744 80228929 -79370854 + RMER15 LTR ERVL 349 572 -3 2 1197 2104 335 48 43 chr3 80229229 80230259 -79369524 + Lx8 LINE L1 6257 7292 -181 2 1197 451 72 24 24 chr3 80230442 80230527 -79369256 + (TCTCTG)n Simple_repeat Simple_repeat 2 86 0 2 1197 392 73 18 0 chr3 80230527 80230582 -79369201 - HAL1-3A_ME LINE L1 -824 2034 1979 2 1197 451 172 22 15 chr3 80231274 80231410 -79368373 + (TA)n Simple_repeat Simple_repeat 2 138 0 2 1197 536 77 13 0 chr3 80232584 80232662 -79367121 + (TA)n Simple_repeat Simple_repeat 2 80 0 2 1197 462 36 0 0 chr3 80233304 80233360 -79366423 + (TC)n Simple_repeat Simple_repeat 1 56 0 2 1197 357 149 0 0 chr3 80233360 80233427 -79366356 + (CA)n Simple_repeat Simple_repeat 2 68 0 2 1197 4453 215 41 50 chr3 80233564 80233938 -79365845 - Lx7 LINE L1 0 7696 7325 3 1197 225 65 0 0 chr3 80233938 80233969 -79365814 + (CAAAC)n Simple_repeat Simple_repeat 4 34 0 3 1197 4453 215 41 50 chr3 80233969 80234692 -79365091 - Lx7 LINE L1 -372 7324 6609 3 1197 288 286 71 0 chr3 80234695 80234793 -79364990 - PB1D9 SINE Alu -7 113 9 3 1197 507 379 102 12 chr3 80236013 80236267 -79363516 + B4A SINE B4 2 278 -14 3 1197 1021 112 146 7 chr3 80236321 80236521 -79363262 - L1_Mus3 LINE L1 -11 6627 6386 3 1197 26 0 0 0 chr3 80236651 80236677 -79363106 + AT_rich Low_complexity Low_complexity 1 26 0 3 1197 288 111 0 0 chr3 80236757 80236802 -79362981 + (CA)n Simple_repeat Simple_repeat 2 46 0 3 1197 2915 94 0 0 chr3 80236976 80237369 -79362414 + L1_Mus1 LINE L1 5331 5723 -160 3 1197 5567 64 21 19 chr3 80237369 80238122 -79361661 + L1_Mus1 LINE L1 5812 6566 -1 3 1197 3496 23 0 0 chr3 80238167 80238563 -79361220 - MTA_Mm LTR MaLR 0 396 1 3 1197 21 36 0 0 chr3 80239113 80239141 -79360642 + AT_rich Low_complexity Low_complexity 1 28 0 3 1197 210 94 17 86 chr3 80239250 80239308 -79360475 + (TATAA)n Simple_repeat Simple_repeat 2 55 0 3 1197 195 69 0 0 chr3 80239367 80239396 -79360387 + (T)n Simple_repeat Simple_repeat 1 29 0 3 1197 243 377 69 112 chr3 80239451 80239684 -79360099 + Tigger7 DNA MER2_type 65 287 -2204 3 1197 460 248 38 0 chr3 80239820 80239925 -79359858 - B1F2 SINE Alu -1 148 40 3 1197 813 198 35 11 chr3 80240208 80240382 -79359401 + URR1A DNA MER1_type 47 224 -2 3 1197 555 78 4 0 chr3 80241661 80241748 -79358035 - L1Md_F3 LINE L1 -400 6167 6075 3 1197 2687 39 0 9 chr3 80241748 80242087 -79357696 + L1Md_F3 LINE L1 6249 6584 0 3 1197 516 185 0 0 chr3 80242087 80242108 -79357675 - L1Md_F3 LINE L1 -504 6078 6058 3 1197 40941 11 1 0 chr3 80242260 80248637 -79351146 - L1Md_A LINE L1 0 6582 244 3 1197 445 42 42 0 chr3 80248696 80248767 -79351016 + (TTTTG)n Simple_repeat Simple_repeat 2 75 0 3 1197 7365 71 7 21 chr3 80248779 80249775 -79350008 - L1Md_F2 LINE L1 -14 6568 5587 3 1197 293 105 0 0 chr3 80249776 80249814 -79349969 + L1VL1 LINE L1 113 150 -6272 3 1197 226 269 0 19 chr3 80249781 80249834 -79349949 + L1Md_A LINE L1 133 184 -6540 3 1197 1005 121 17 0 chr3 80250192 80250366 -79349417 + (GAAA)n Simple_repeat Simple_repeat 3 179 0 3 1197 455 338 25 13 chr3 80250459 80250774 -79349009 - L1M2 LINE L1 -510 5793 5475 3 1197 34174 71 7 1 chr3 80250774 80256920 -79342863 - L1Md_F2 LINE L1 -4 6578 399 3 1197 507 322 58 9 chr3 80257051 80257377 -79342406 - L1M2 LINE L1 -789 5354 5013 3 1197 590 258 136 38 chr3 80257453 80257729 -79342054 - L1_Mur3 LINE L1 -284 5602 5298 3 1197 2494 206 41 29 chr3 80257763 80258322 -79341461 - RLTR20A2 LTR ERVK -12 566 1 3 1197 26 0 0 0 chr3 80258348 80258374 -79341409 + AT_rich Low_complexity Low_complexity 1 26 0 3 1197 26 30 0 0 chr3 80259065 80259098 -79340685 + AT_rich Low_complexity Low_complexity 1 33 0 3 1197 889 167 25 0 chr3 80260561 80260723 -79339060 + Lx5 LINE L1 5450 5615 -262 3 1197 260 180 0 20 chr3 80260723 80260774 -79339009 - RLTR20B3 LTR ERVK 0 577 528 3 1197 2069 208 69 41 chr3 80260802 80260865 -79338918 - RLTR20B3 LTR ERVK -36 541 485 3 1197 378 0 0 0 chr3 80260865 80260907 -79338876 + (CA)n Simple_repeat Simple_repeat 2 43 0 3 1197 2069 208 69 41 chr3 80260907 80261350 -79338433 - RLTR20B3 LTR ERVK -93 484 23 3 1197 226 111 74 0 chr3 80261352 80261406 -79338377 + Lx5 LINE L1 5614 5671 -1379 3 1197 8425 143 37 5 chr3 80261398 80262801 -79336982 + Lx4A LINE L1 5610 7057 -1 3 1197 23 0 0 0 chr3 80262801 80262824 -79336959 + AT_rich Low_complexity Low_complexity 1 23 0 3 1197 910 295 14 21 chr3 80262824 80263185 -79336598 + L1_Mur3 LINE L1 5321 5712 -456 3 1197 397 296 11 136 chr3 80263305 80263489 -79336294 - RSINE1 SINE B4 0 165 5 3 1197 2092 86 53 0 chr3 80263489 80263792 -79335991 + ORR1A2 LTR MaLR 1 319 -8 3 1197 3397 146 24 2 chr3 80263796 80264344 -79335439 + ORR1A2-int LTR MaLR 1 560 -1403 3 1197 739 169 31 97 chr3 80264305 80264543 -79335240 + MT2B LTR ERVL 127 294 -307 3 1197 394 230 61 0 chr3 80264443 80264608 -79335175 + ORR1A2-int LTR MaLR 718 892 -1071 3 1197 3233 72 3 3 chr3 80264608 80265046 -79334737 + L1MB4 LINE L1 5494 5959 -221 3 1197 1132 8 0 0 chr3 80264999 80265125 -79334658 - L1Md_F2 LINE L1 -356 6226 6101 3 1197 1598 99 0 8 chr3 80265125 80265360 -79334423 + L1Md_F2 LINE L1 6348 6580 -2 3 1197 888 10 0 0 chr3 80265370 80265471 -79334312 + (GAA)n Simple_repeat Simple_repeat 2 102 0 3 1197 761 134 62 21 chr3 80265471 80265616 -79334167 + ORR1A3-int LTR MaLR 862 1012 -951 3 1197 702 233 49 49 chr3 80265625 80265828 -79333955 - RLTR17 LTR ERVK -121 571 369 3 1197 288 150 16 32 chr3 80265818 80265880 -79333903 + RLTR17 LTR ERVK 313 373 -319 3 1197 932 274 0 49 chr3 80265884 80266149 -79333634 - RLTR17 LTR ERVK -336 356 105 3 1197 1485 117 187 0 chr3 80266155 80266412 -79333371 + ORR1A3-int LTR MaLR 1485 1789 -174 3 1197 27 103 0 0 chr3 80268418 80268515 -79331268 + AT_rich Low_complexity Low_complexity 1 97 0 3 1197 34 0 0 0 chr3 80268792 80268826 -79330957 + AT_rich Low_complexity Low_complexity 1 34 0 3 1197 35332 37 0 0 chr3 80269314 80274971 -79324812 + L1Md_T LINE L1 1 5589 -297 3 1197 8959 6 0 0 chr3 80274971 80275967 -79323816 + L1Md_T LINE L1 5590 6585 0 3 1197 25 31 0 0 chr3 80275996 80276028 -79323755 + AT_rich Low_complexity Low_complexity 1 32 0 3 1197 226 250 0 0 chr3 80276030 80276086 -79323697 + T-rich Low_complexity Low_complexity 1 56 0 3 1197 588 388 37 15 chr3 80277112 80277384 -79322399 + Tigger7 DNA MER2_type 28 305 -2186 3 1197 548 347 50 23 chr3 80277430 80277731 -79322052 + Tigger7 DNA MER2_type 2181 2489 -2 3 1197 1892 233 77 41 chr3 80278416 80279075 -79320708 + L1VL4 LINE L1 267 949 -5353 3 1197 2868 163 130 15 chr3 80279077 80279725 -79320058 + L1_Mur1 LINE L1 3217 3938 -1948 3 1197 7694 48 1 1 chr3 80279723 80280677 -79319106 - L1Md_F3 LINE L1 -215 5668 4715 3 1197 7377 41 1 2 chr3 80280677 80281584 -79318199 + L1Md_F3 LINE L1 5665 6570 -14 3 1197 1631 156 33 10 chr3 80281591 80281896 -79317887 + L1_Mur1 LINE L1 3916 4227 -1650 3 1197 1127 234 89 46 chr3 80281892 80282196 -79317587 + Lx2B LINE L1 6680 6996 -4 3 1197 593 321 73 18 chr3 80283485 80283758 -79316025 + B4A SINE B4 3 290 -2 3 1197 267 31 0 0 chr3 80284101 80284133 -79315650 + (TC)n Simple_repeat Simple_repeat 1 32 0 3 1197 642 265 123 69 chr3 80284707 80285056 -79314727 - RLTR9A LTR ERVK 0 368 1 3 1197 474 316 22 69 chr3 80286276 80286540 -79313243 - MTE2a LTR MaLR -151 228 8 3 1197 960 87 147 12 chr3 80286589 80286609 -79313174 - B2_Mm2 SINE B2 -9 186 167 3 1197 459 0 0 0 chr3 80286609 80286660 -79313123 + (TATG)n Simple_repeat Simple_repeat 2 52 0 3 1197 960 87 147 12 chr3 80286660 80286802 -79312981 - B2_Mm2 SINE B2 -29 166 3 3 1197 327 302 118 59 chr3 80287688 80287994 -79311789 - L1MEg LINE L1 -4439 1645 1322 3 1197 360 0 0 0 chr3 80288743 80288783 -79311000 + (CA)n Simple_repeat Simple_repeat 2 41 0 3 1197 318 383 8 30 chr3 80288784 80288916 -79310867 - Lx8 LINE L1 -149 7324 7196 3 1197 391 324 44 0 chr3 80288917 80289053 -79310730 - B4A SINE B4 -63 229 88 3 1197 27 0 0 0 chr3 80290468 80290495 -79309288 + AT_rich Low_complexity Low_complexity 1 27 0 3 1197 3615 218 63 9 chr3 80290513 80291458 -79308325 - Lx4B LINE L1 -73 6903 5910 3 1197 4999 158 3 17 chr3 80291458 80291872 -79307911 + Lx3C LINE L1 4842 5257 -620 3 1197 200 59 0 29 chr3 80291872 80291907 -79307876 + (CAAA)n Simple_repeat Simple_repeat 3 36 0 3 1197 4999 158 3 17 chr3 80291907 80292363 -79307420 + Lx3C LINE L1 5258 5700 -177 3 1197 1436 87 53 14 chr3 80292352 80292561 -79307222 - L1_Mus2 LINE L1 -202 6364 6148 3 1197 1327 116 10 5 chr3 80292561 80292769 -79307014 + L1_Mus2 LINE L1 6358 6566 0 3 1197 1666 91 0 8 chr3 80292902 80293136 -79306647 - L1Md_F2 LINE L1 -1 6581 6350 3 1197 813 240 16 37 chr3 80293400 80293590 -79306193 + B3A SINE B2 3 188 -10 3 1197 1641 185 77 0 chr3 80293625 80293938 -79305845 + ORR1B1 LTR MaLR 1 337 -57 3 1197 585 0 0 0 chr3 80293938 80294003 -79305780 + (GAAA)n Simple_repeat Simple_repeat 4 68 0 3 1197 1026 25 0 0 chr3 80294004 80294125 -79305658 + (GGAAA)n Simple_repeat Simple_repeat 4 124 0 3 1197 1403 132 0 0 chr3 80294125 80294344 -79305439 + Lx3C LINE L1 5694 5912 -1064 3 1197 202 360 48 41 chr3 80295143 80295288 -79304495 - MIR SINE MIR -38 224 79 3 1197 344 59 0 19 chr3 80295670 80295722 -79304061 + (GGAA)n Simple_repeat Simple_repeat 3 53 0 3 1197 641 286 140 127 chr3 80296001 80296379 -79303404 - MTE2b LTR MaLR 0 379 1 3 1197 243 0 0 0 chr3 80296380 80296407 -79303376 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3 1197 254 284 87 42 chr3 80296479 80296766 -79303017 + L1MC4a LINE L1 7138 7437 -605 3 1197 868 64 9 0 chr3 80296954 80297064 -79302719 - L1Md_F2 LINE L1 -848 5736 5626 3 1197 6601 58 0 5 chr3 80297064 80297901 -79301882 + L1Md_F2 LINE L1 5750 6582 0 3 1197 6278 242 88 30 chr3 80297918 80299683 -79300100 - Lx6 LINE L1 -6 7454 5587 3 1197 1619 308 117 25 chr3 80300747 80301352 -79298431 + MTEa-int LTR MaLR 918 1578 -2 3 1197 1158 283 41 27 chr3 80301357 80301724 -79298059 + MTEa LTR MaLR 3 374 -5 3 1197 38 68 0 0 chr3 80302042 80302115 -79297668 + AT_rich Low_complexity Low_complexity 1 73 0 3 1197 1050 84 52 7 chr3 80302339 80302494 -79297289 + B2_Mm2 SINE B2 25 186 -9 3 1197 1670 26 0 0 chr3 80302862 80303054 -79296729 + B2_Mm1a SINE B2 2 193 0 3 1197 29 28 0 0 chr3 80303221 80303257 -79296526 + AT_rich Low_complexity Low_complexity 1 36 0 3 1197 466 154 34 27 chr3 80304557 80304704 -79295079 + GA-rich Low_complexity Low_complexity 2 149 0 3 1197 899 65 0 8 chr3 80305580 80305704 -79294079 + (GA)n Simple_repeat Simple_repeat 2 124 0 3 1197 458 231 128 9 chr3 80306019 80306128 -79293655 - B1_Mur2 SINE Alu -20 129 8 3 1197 601 319 50 0 chr3 80306153 80306167 -79293616 - B3A SINE B2 -7 191 175 3 1197 303 28 0 0 chr3 80306167 80306203 -79293580 + (TG)n Simple_repeat Simple_repeat 1 36 0 3 1197 601 319 50 0 chr3 80306203 80306370 -79293413 - B3A SINE B2 -24 174 2 3 1197 3070 30 16 84 chr3 80306653 80307093 -79292690 + L1Md_F3 LINE L1 6174 6583 -1 3 1197 486 136 0 0 chr3 80308218 80308299 -79291484 + (GGGA)n Simple_repeat Simple_repeat 4 84 0 3 1197 231 140 0 0 chr3 80308751 80308801 -79290982 + (CA)n Simple_repeat Simple_repeat 2 51 0 3 1197 450 309 207 31 chr3 80309219 80309736 -79290047 + L2 LINE L2 731 1338 -2081 3 1197 193 371 21 0 chr3 80309943 80310040 -79289743 + L2 LINE L2 1441 1539 -1880 3 1197 27 0 0 0 chr3 80310957 80310984 -79288799 + AT_rich Low_complexity Low_complexity 1 27 0 3 1197 301 324 23 62 chr3 80310988 80311245 -79288538 + Lx9 LINE L1 5853 6099 -1545 3 1197 342 0 0 0 chr3 80311392 80311430 -79288353 + (TG)n Simple_repeat Simple_repeat 2 39 0 3 1197 29 0 0 0 chr3 80311516 80311545 -79288238 + AT_rich Low_complexity Low_complexity 1 29 0 3 1197 753 331 31 58 chr3 80312597 80312682 -79287101 + B4A SINE B4 2 74 -218 3 1197 342 0 0 0 chr3 80312682 80312720 -79287063 + (CA)n Simple_repeat Simple_repeat 2 39 0 4 1197 753 331 31 58 chr3 80312720 80312926 -79286857 + B4A SINE B4 75 285 -7 3 1197 321 159 0 0 chr3 80313965 80314028 -79285755 + (CA)n Simple_repeat Simple_repeat 2 64 0 4 1197 475 357 27 5 chr3 80314131 80314317 -79285466 - Lx9 LINE L1 -1097 6547 6358 4 1197 739 292 22 9 chr3 80314444 80314675 -79285108 + Lx9 LINE L1 6659 6892 -752 4 1197 928 283 20 49 chr3 80314673 80315022 -79284761 + Lx7 LINE L1 7071 7409 -287 4 1197 237 175 95 0 chr3 80315066 80315129 -79284654 + Lx7 LINE L1 7612 7680 -16 4 1197 516 324 134 42 chr3 80315144 80315832 -79283951 + Lx9 LINE L1 6735 7620 -24 4 1197 648 198 8 32 chr3 80315896 80316021 -79283762 + B1_Mur3 SINE Alu 28 149 0 4 1197 478 195 0 0 chr3 80316030 80316143 -79283640 + GA-rich Low_complexity Low_complexity 4 116 0 4 1197 351 329 125 48 chr3 80316845 80317180 -79282603 - L1M5 LINE L1 -485 5755 5395 4 1197 1788 59 59 0 chr3 80317307 80317546 -79282237 - L1_Mus1 LINE L1 -1 6566 6314 4 1197 21 57 0 0 chr3 80317792 80317827 -79281956 + AT_rich Low_complexity Low_complexity 1 35 0 4 1197 212 114 0 43 chr3 80318190 80318236 -79281547 + CT-rich Low_complexity Low_complexity 6 49 0 4 1197 32 57 0 0 chr3 80318835 80318888 -79280895 + AT_rich Low_complexity Low_complexity 1 53 0 4 1197 200 233 0 0 chr3 80318949 80318992 -79280791 + T-rich Low_complexity Low_complexity 1 43 0 4 1197 3022 282 78 84 chr3 80319016 80319943 -79279840 - Lx5 LINE L1 -29 7021 6135 4 1197 498 46 0 0 chr3 80319943 80320008 -79279775 + (TC)n Simple_repeat Simple_repeat 2 66 0 4 1197 3022 282 78 84 chr3 80320008 80320503 -79279280 - Lx5 LINE L1 -916 6134 5607 4 1197 2618 211 31 173 chr3 80320505 80321549 -79278234 - L1_Mur1 LINE L1 -655 5231 4337 4 1197 2206 285 24 27 chr3 80321565 80321962 -79277821 - Lx5 LINE L1 -3 7055 6647 4 1197 248 0 31 0 chr3 80321962 80321994 -79277789 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 4 1197 2206 287 27 40 chr3 80321994 80322231 -79277552 - Lx5 LINE L1 -388 6670 6450 4 1197 1123 83 14 0 chr3 80322231 80322376 -79277407 + B1_Mus1 SINE Alu 2 148 0 4 1197 2112 300 49 129 chr3 80322376 80322966 -79276817 - Lx5 LINE L1 -585 6473 5928 4 1197 380 202 0 0 chr3 80322964 80323043 -79276740 - L1_Mur3 LINE L1 -1479 4401 4323 4 1197 330 280 109 44 chr3 80323281 80323464 -79276319 - L1M5 LINE L1 -3200 2946 2752 4 1197 354 305 94 15 chr3 80323491 80323694 -79276089 - L1MD LINE L1 -3519 2627 2409 4 1197 413 405 31 31 chr3 80323697 80323919 -79275864 - MLT1F2 LTR MaLR -5 555 334 4 1197 1615 134 11 4 chr3 80324256 80324518 -79275265 - Lx3A LINE L1 -1 6980 6717 4 1197 4787 115 55 10 chr3 80324518 80325289 -79274494 + Lx3_Mus LINE L1 5755 6559 -450 4 1197 293 183 12 0 chr3 80325430 80325462 -79274321 + (CATA)n Simple_repeat Simple_repeat 2 33 0 4 1197 3484 18 2 0 chr3 80325462 80325857 -79273926 - MTA_Mm LTR MaLR 0 396 1 4 1197 9068 36 4 1 chr3 80325857 80326952 -79272831 - MTA_Mm-int LTR MaLR 0 1098 1 4 1197 3484 18 2 0 chr3 80326952 80327347 -79272436 - MTA_Mm LTR MaLR 0 396 1 4 1197 293 183 12 0 chr3 80327347 80327394 -79272389 + (CATA)n Simple_repeat Simple_repeat 2 49 0 4 1197 231 202 90 27 chr3 80327810 80327894 -79271889 - MIRb SINE MIR -65 197 116 4 1197 617 125 0 8 chr3 80329854 80329975 -79269808 + (TC)n Simple_repeat Simple_repeat 1 120 0 4 1197 27 29 0 0 chr3 80330658 80330692 -79269091 + AT_rich Low_complexity Low_complexity 1 34 0 4 1197 903 168 181 10 chr3 80330692 80330885 -79268898 + URR1A DNA MER1_type 1 226 0 4 1197 3128 152 4 18 chr3 80331003 80331511 -79268272 + Lx2B LINE L1 6455 6955 -45 4 1197 321 198 130 11 chr3 80331910 80332002 -79267781 + PB1 SINE Alu 21 123 -4 4 1197 5155 41 11 0 chr3 80332050 80332683 -79267100 + L1Md_F3 LINE L1 5934 6573 -11 4 1197 278 67 22 0 chr3 80332694 80332739 -79267044 + (CAAAA)n Simple_repeat Simple_repeat 4 49 0 4 1197 1075 66 13 0 chr3 80332756 80332907 -79266876 + L1Md_F3 LINE L1 6432 6584 0 4 1197 261 321 115 52 chr3 80332915 80333089 -79266694 + L1MC1 LINE L1 6047 6231 -102 4 1197 12846 59 2 5 chr3 80333438 80335817 -79263966 - L1Md_F2 LINE L1 -5 6577 4210 4 1197 6478 121 31 11 chr3 80335917 80337448 -79262335 + L1_Mus3 LINE L1 5072 6632 -6 4 1197 290 328 32 95 chr3 80338245 80338434 -79261349 - MLT1J LTR MaLR 0 512 336 4 1197 245 269 19 0 chr3 80340002 80340054 -79259729 - tRNA-Ala-GCY_ tRNA tRNA -8 67 15 4 1197 399 292 9 0 chr3 80340076 80340182 -79259601 - PB1D10 SINE Alu -1 116 10 4 1197 1074 145 17 6 chr3 80341142 80341322 -79258461 - RLTR15 LTR ERVK -177 182 1 4 1197 475 192 254 0 chr3 80341519 80341649 -79258134 + RLTR15 LTR ERVK 196 358 -1 4 1197 2742 16 9 0 chr3 80342458 80342779 -79257004 + L1Md_T LINE L1 5263 5586 -297 4 1197 8496 30 0 0 chr3 80342779 80343775 -79256008 + L1Md_T LINE L1 5587 6582 0 4 1197 279 0 0 0 chr3 80343846 80343877 -79255906 + (CA)n Simple_repeat Simple_repeat 2 32 0 4 1197 477 0 0 0 chr3 80343877 80343929 -79255854 + (GA)n Simple_repeat Simple_repeat 2 54 0 4 1197 520 316 15 0 chr3 80343929 80344062 -79255721 + B4A SINE B4 14 148 -144 4 1197 360 0 0 0 chr3 80344408 80344448 -79255335 + (TC)n Simple_repeat Simple_repeat 2 41 0 4 1197 23 0 0 0 chr3 80345301 80345324 -79254459 + AT_rich Low_complexity Low_complexity 1 23 0 4 1197 842 332 11 54 chr3 80345842 80346211 -79253572 + Lx9 LINE L1 6841 7193 -451 4 1197 4697 34 0 0 chr3 80346269 80346825 -79252958 - L1Md_T LINE L1 -232 6350 5795 4 1197 1774 49 0 4 chr3 80346825 80347050 -79252733 + L1Md_T LINE L1 6358 6581 -1 4 1197 201 182 0 0 chr3 80347096 80347129 -79252654 + A-rich Low_complexity Low_complexity 1 33 0 4 1198 467 241 11 0 chr3 80348686 80348773 -79251010 + PB1D10 SINE Alu 21 108 -9 4 1198 209 252 0 80 chr3 80349553 80349678 -79250105 + CT-rich Low_complexity Low_complexity 1 115 0 4 1198 1250 117 16 0 chr3 80349791 80349979 -79249804 + B2_Mm2 SINE B2 1 191 -4 4 1198 2704 221 84 104 chr3 80352881 80353746 -79246037 + RMER13A LTR ERVK 1 848 -12 4 1198 378 0 0 0 chr3 80353916 80353958 -79245825 + (TC)n Simple_repeat Simple_repeat 1 42 0 4 1198 342 0 0 0 chr3 80353958 80353995 -79245788 + (CA)n Simple_repeat Simple_repeat 1 38 0 4 1198 267 275 101 0 chr3 80354031 80354100 -79245683 + MTEa LTR MaLR 256 331 -48 4 1198 1642 173 91 24 chr3 80354280 80354611 -79245172 - ORR1B1 LTR MaLR 0 394 42 4 1198 230 228 69 17 chr3 80355099 80355157 -79244626 - MTEb LTR MaLR -24 355 295 4 1198 359 229 89 121 chr3 80355589 80355713 -79244070 + ID_B1 SINE B4 100 219 -5 4 1198 261 212 130 52 chr3 80355593 80355747 -79244036 - YREP_Mm Unknown Unknown -1518 294 129 4 1198 21 0 0 0 chr3 80356655 80356676 -79243107 + AT_rich Low_complexity Low_complexity 1 21 0 4 1198 21 57 0 0 chr3 80357444 80357479 -79242304 + AT_rich Low_complexity Low_complexity 1 35 0 4 1198 320 255 150 20 chr3 80357490 80357590 -79242193 - RSINE1 SINE B4 0 165 53 4 1198 612 270 74 12 chr3 80357650 80357983 -79241800 + MLT1B LTR MaLR 1 382 -8 4 1198 36 70 0 0 chr3 80358230 80358301 -79241482 + AT_rich Low_complexity Low_complexity 1 71 0 4 1198 30 45 0 0 chr3 80358450 80358494 -79241289 + AT_rich Low_complexity Low_complexity 1 44 0 4 1198 228 341 52 29 chr3 80359494 80359666 -79240117 - LTR80A LTR ERVL 0 583 408 4 1198 672 304 139 9 chr3 80359739 80360098 -79239685 + MLT2B4 LTR ERVL 3 414 0 4 1198 1249 326 52 18 chr3 80362399 80362958 -79236825 - Lx8 LINE L1 -862 6611 6034 4 1198 694 321 25 90 chr3 80363897 80364298 -79235485 - MTE2b LTR MaLR -4 375 1 4 1198 641 377 49 81 chr3 80365926 80366394 -79233389 - MER74C LTR ERVL -3 457 5 4 1198 377 189 0 10 chr3 80367373 80367469 -79232314 + (TA)n Simple_repeat Simple_repeat 1 95 0 4 1198 271 235 0 0 chr3 80367473 80367524 -79232259 + ORR1C2 LTR MaLR 46 96 -278 4 1198 408 168 0 0 chr3 80367536 80367637 -79232146 + CT-rich Low_complexity Low_complexity 2 102 0 4 1198 917 204 61 52 chr3 80367643 80367855 -79231928 + ORR1C2 LTR MaLR 171 384 0 4 1198 462 223 124 9 chr3 80367861 80367974 -79231809 + Lx9 LINE L1 6805 6930 -714 4 1198 391 202 66 19 chr3 80368222 80368328 -79231455 - MER74C LTR ERVL 0 460 350 4 1198 1357 236 132 22 chr3 80368702 80369117 -79230666 - Lx2A1 LINE L1 -851 6157 5697 4 1198 1277 244 116 7 chr3 80369109 80369498 -79230285 + Lx2B LINE L1 6209 6933 -75 4 1198 22 56 0 0 chr3 80371107 80371143 -79228640 + AT_rich Low_complexity Low_complexity 1 36 0 4 1198 361 297 30 23 chr3 80371257 80371388 -79228395 - B3A SINE B2 -66 132 1 4 1198 518 229 454 43 chr3 80371470 80371733 -79228050 + ORR1D2 LTR MaLR 1 370 0 4 1198 22 35 0 0 chr3 80371892 80371921 -79227862 + AT_rich Low_complexity Low_complexity 1 29 0 4 1198 903 278 15 11 chr3 80371932 80372198 -79227585 - L1_Rod LINE L1 -49 5798 5532 4 1198 231 266 63 0 chr3 80373039 80373118 -79226665 + MT2B LTR ERVL 152 235 -366 4 1198 454 246 14 122 chr3 80373056 80373204 -79226579 + B1_Mur1 SINE Alu 17 148 -1 4 1198 675 221 0 0 chr3 80373485 80373607 -79226176 - B1_Mus1 SINE Alu -26 122 1 4 1198 231 263 33 17 chr3 80373500 80373620 -79226163 - ORR1B1-int LTR MaLR -756 753 632 4 1198 2430 107 19 0 chr3 80373633 80374007 -79225776 + L1_Mus4 LINE L1 6256 6636 0 4 1198 3334 182 96 14 chr3 80374008 80374821 -79224962 - Lx9 LINE L1 -4 7640 6761 4 1198 335 239 25 13 chr3 80374823 80374911 -79224872 + B1_Mur4 SINE Alu 9 98 -52 4 1198 375 260 13 0 chr3 80375292 80375369 -79224414 - RSINE1 SINE B4 -15 150 73 4 1198 792 314 71 39 chr3 80375758 80376450 -79223333 - L1MC4a LINE L1 -180 7702 6989 4 1198 757 130 17 4 chr3 80376525 80376662 -79223121 - B1_Mus2 SINE Alu -1 147 1 4 1198 653 335 146 34 chr3 80376897 80377807 -79221976 - L1MC4a LINE L1 -1261 6621 5610 4 1198 31 0 0 0 chr3 80377971 80378002 -79221781 + AT_rich Low_complexity Low_complexity 1 31 0 5 1198 7393 126 15 10 chr3 80378102 80379257 -79220526 - Lx2 LINE L1 0 6997 5838 5 1198 2538 145 35 9 chr3 80379257 80379688 -79220095 + Lx2 LINE L1 5388 5829 -54 5 1198 292 108 383 31 chr3 80380716 80380810 -79218973 - B2_Mm2 SINE B2 -22 173 47 5 1198 1263 102 11 0 chr3 80380876 80381052 -79218731 - B2_Mm1t SINE B2 -14 179 2 5 1198 922 192 126 96 chr3 80381113 80381406 -79218377 - RLTR24 LTR ERV1 0 529 228 5 1198 5268 184 68 17 chr3 80381410 80382784 -79216999 + Lx3_Mus LINE L1 5550 7009 0 5 1198 536 205 56 93 chr3 80382828 80382989 -79216794 - RLTR24 LTR ERV1 -276 253 99 5 1198 227 240 24 8 chr3 80383141 80383267 -79216516 + (TA)n Simple_repeat Simple_repeat 1 128 0 5 1198 352 195 44 6 chr3 80383288 80383448 -79216335 + (TA)n Simple_repeat Simple_repeat 2 167 0 5 1198 23 0 0 0 chr3 80383466 80383489 -79216294 + AT_rich Low_complexity Low_complexity 1 23 0 5 1198 2474 285 97 39 chr3 80383803 80384813 -79214970 - Lx8 LINE L1 -2 7471 6403 5 1198 1139 252 57 18 chr3 80385210 80385542 -79214241 - Lx9 LINE L1 -201 7443 7099 5 1198 186 43 0 0 chr3 80385542 80385565 -79214218 + (TG)n Simple_repeat Simple_repeat 1 23 0 5 1198 258 32 0 0 chr3 80385743 80385774 -79214009 + (TAA)n Simple_repeat Simple_repeat 2 32 0 5 1198 823 252 28 32 chr3 80386002 80386219 -79213564 - B3 SINE B2 0 216 1 5 1198 1218 242 117 54 chr3 80386313 80386759 -79213024 - RLTR31A_Mm LTR ERVK 0 584 111 5 1198 4596 64 3 7 chr3 80386779 80387373 -79212410 - L1_Mus2 LINE L1 0 6566 5975 5 1198 2366 124 0 0 chr3 80387373 80387736 -79212047 + MusHAL1 LINE L1 1282 1644 -1068 5 1198 645 111 10 0 chr3 80387736 80387835 -79211948 - RLTR31A_Mm LTR ERVK -484 100 1 5 1198 1698 176 169 27 chr3 80388698 80389066 -79210717 - MTC LTR MaLR -1 420 1 5 1198 406 309 19 68 chr3 80389171 80389479 -79210304 + MTE2b LTR MaLR 1 375 -4 5 1198 247 256 93 8 chr3 80389484 80389602 -79210181 - L1M1 LINE L1 -524 5779 5652 5 1198 24 0 0 0 chr3 80389829 80389853 -79209930 + AT_rich Low_complexity Low_complexity 1 24 0 5 1198 786 50 0 0 chr3 80390493 80390592 -79209191 + (TC)n Simple_repeat Simple_repeat 2 100 0 5 1198 24 32 0 0 chr3 80390622 80390653 -79209130 + AT_rich Low_complexity Low_complexity 1 31 0 5 1198 4241 154 53 12 chr3 80390659 80391395 -79208388 - Lx4A LINE L1 -1 7057 6292 5 1198 465 110 0 0 chr3 80391613 80391686 -79208097 + (TA)n Simple_repeat Simple_repeat 2 74 0 5 1198 1375 251 71 10 chr3 80391915 80392310 -79207473 + MTC LTR MaLR 3 421 0 5 1198 2739 244 36 129 chr3 80392310 80392700 -79207083 + MTC-int LTR MaLR 1 364 -734 5 1198 3359 105 53 8 chr3 80392700 80393209 -79206574 + Lx LINE L1 6122 6653 -1 5 1198 2739 244 36 129 chr3 80393209 80394021 -79205762 + MTC-int LTR MaLR 365 1091 -7 5 1198 1724 191 96 10 chr3 80394029 80394416 -79205367 + MTC LTR MaLR 1 420 -1 5 1198 21 0 0 0 chr3 80394855 80394876 -79204907 + AT_rich Low_complexity Low_complexity 1 21 0 5 1198 518 334 83 48 chr3 80394878 80395334 -79204449 + MER70A LTR ERVL 1 472 0 5 1198 5493 43 9 1 chr3 80396541 80397217 -79202566 + L1_Mus1 LINE L1 5876 6556 -11 5 1198 393 39 0 0 chr3 80397217 80397268 -79202515 + (TAA)n Simple_repeat Simple_repeat 3 53 0 5 1198 194 247 105 114 chr3 80397335 80397440 -79202343 - MIRc SINE MIR -104 164 61 5 1198 641 302 20 0 chr3 80397821 80398023 -79201760 - B3 SINE B2 -6 210 5 5 1198 3525 132 69 0 chr3 80398938 80399492 -79200291 - Lx2 LINE L1 -2 6995 6404 5 1198 733 151 81 0 chr3 80399500 80399648 -79200135 + B2_Mm2 SINE B2 11 200 -16 5 1198 3222 218 18 1 chr3 80400206 80400864 -79198919 - Lx7 LINE L1 -365 7331 6663 5 1198 1263 232 49 76 chr3 80400866 80401276 -79198507 + Lx7 LINE L1 5587 5985 -1711 5 1198 326 287 81 10 chr3 80401284 80401580 -79198203 - L1M2 LINE L1 -2922 3221 2905 5 1198 606 283 11 0 chr3 80401609 80401793 -79197990 + L1M2 LINE L1 4671 4856 -1287 5 1198 4149 222 36 25 chr3 80401832 80402795 -79196988 - Lx6 LINE L1 -697 6763 5790 5 1198 4293 191 29 1 chr3 80402798 80403659 -79196124 - Lx6 LINE L1 -283 5597 4713 5 1198 48 32 0 0 chr3 80403669 80403731 -79196052 + AT_rich Low_complexity Low_complexity 1 62 0 5 1198 330 167 0 0 chr3 80404174 80404234 -79195549 + (TA)n Simple_repeat Simple_repeat 1 60 0 5 1198 595 304 109 39 chr3 80404366 80404725 -79195058 - MER31B LTR ERV1 0 466 83 5 1198 595 288 90 47 chr3 80404878 80405152 -79194631 - B4A SINE B4 -6 286 2 5 1198 214 264 40 24 chr3 80407433 80407557 -79192226 + (CATATA)n Simple_repeat Simple_repeat 2 127 0 5 1198 233 204 0 0 chr3 80407507 80407561 -79192222 + (CA)n Simple_repeat Simple_repeat 2 55 0 5 1198 295 339 28 0 chr3 80407594 80407703 -79192080 - RMER15 LTR ERVL -33 542 431 5 1198 507 285 179 24 chr3 80407789 80408001 -79191782 - RMER15 LTR ERVL -5 570 326 5 1198 817 194 14 0 chr3 80408206 80408350 -79191433 + B1_Mur4 SINE Alu 3 148 -2 5 1198 796 251 145 15 chr3 80408584 80408923 -79190860 - MTD LTR MaLR 0 419 6 5 1198 196 30 61 0 chr3 80409156 80409189 -79190594 + (CAA)n Simple_repeat Simple_repeat 2 36 0 5 1198 22 0 0 0 chr3 80409617 80409639 -79190144 + AT_rich Low_complexity Low_complexity 1 22 0 5 1198 316 278 123 48 chr3 80409641 80410015 -79189768 + L1M7 LINE L1 634 1035 -5183 5 1198 1691 150 14 4 chr3 80410189 80410470 -79189313 - Lx5 LINE L1 -570 6480 6197 5 1198 23 33 0 0 chr3 80411340 80411370 -79188413 + AT_rich Low_complexity Low_complexity 1 30 0 5 1198 364 280 59 136 chr3 80413413 80413686 -79186097 - MTE2b LTR MaLR -3 376 125 5 1198 269 258 93 0 chr3 80414785 80414882 -79184901 + L1MC3 LINE L1 6889 6994 -1001 5 1198 313 321 103 63 chr3 80414928 80415181 -79184602 + L1MC3 LINE L1 6985 7247 -538 5 1198 34 55 0 0 chr3 80415240 80415295 -79184488 + AT_rich Low_complexity Low_complexity 1 55 0 5 1198 330 26 0 0 chr3 80415563 80415602 -79184181 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 5 1198 447 88 0 0 chr3 80415607 80415675 -79184108 - L1_Mus3 LINE L1 -7 6631 6564 5 1198 23 33 0 0 chr3 80415915 80415945 -79183838 + AT_rich Low_complexity Low_complexity 1 30 0 5 1198 336 102 0 0 chr3 80416842 80416891 -79182892 + (T)n Simple_repeat Simple_repeat 1 49 0 5 1198 619 298 55 103 chr3 80416904 80417875 -79181908 - Lx7 LINE L1 -403 5897 4921 5 1198 408 143 0 0 chr3 80417986 80418070 -79181713 + (GA)n Simple_repeat Simple_repeat 1 84 0 5 1198 1076 204 5 0 chr3 80418078 80418289 -79181494 - Lx9 LINE L1 -172 7472 7261 5 1198 21 0 0 0 chr3 80418797 80418818 -79180965 + AT_rich Low_complexity Low_complexity 1 21 0 5 1198 247 352 74 45 chr3 80419030 80419518 -79180265 + L1MEf LINE L1 75 576 -5624 5 1198 189 0 0 0 chr3 80419518 80419539 -79180244 + (A)n Simple_repeat Simple_repeat 1 21 0 5 1198 1306 178 215 19 chr3 80419730 80419968 -79179815 - ORR1C1 LTR MaLR 0 378 145 5 1198 3009 104 34 13 chr3 80419968 80420435 -79179348 - Lx LINE L1 -18 6636 6160 5 1198 1306 178 215 19 chr3 80420435 80420512 -79179271 - ORR1C1 LTR MaLR -234 144 2 5 1198 883 165 16 42 chr3 80421996 80422186 -79177597 + B2_Mm2 SINE B2 1 185 -10 5 1198 287 65 22 0 chr3 80422188 80422234 -79177549 + (TGAA)n Simple_repeat Simple_repeat 2 48 0 5 1198 1265 69 6 0 chr3 80422440 80422613 -79177170 + (TTTC)n Simple_repeat Simple_repeat 4 177 0 5 1198 807 306 133 14 chr3 80422710 80423078 -79176705 + Lx8 LINE L1 7059 7470 -3 5 1198 30 59 0 0 chr3 80423175 80423226 -79176557 + AT_rich Low_complexity Low_complexity 1 51 0 5 1198 302 200 145 13 chr3 80423707 80423783 -79176000 + MTEb LTR MaLR 292 377 -2 5 1198 845 318 177 50 chr3 80423796 80424470 -79175313 + MTEb-int LTR MaLR 9 794 -786 5 1198 854 306 67 10 chr3 80424468 80424768 -79175015 + MTEa LTR MaLR 63 379 0 5 1198 523 59 0 0 chr3 80425105 80425173 -79174610 - B1_Mus2 SINE Alu -1 146 79 5 1198 220 91 0 43 chr3 80425717 80425763 -79174020 + (CA)n Simple_repeat Simple_repeat 1 44 0 5 1198 21 0 0 0 chr3 80425873 80425894 -79173889 + AT_rich Low_complexity Low_complexity 1 21 0 5 1198 1031 249 41 41 chr3 80425916 80426234 -79173549 - Lx6 LINE L1 -8 7452 7135 5 1198 36353 31 5 8 chr3 80426235 80431400 -79168383 + L1Md_T LINE L1 449 5586 -297 5 1198 8214 41 2 0 chr3 80431400 80432393 -79167390 + L1Md_T LINE L1 5587 6581 -1 5 1198 1702 229 47 6 chr3 80432413 80432755 -79167028 - Lx6 LINE L1 -311 7149 6794 5 1198 1407 140 57 49 chr3 80432755 80433018 -79166765 + RLTR15 LTR ERVK 91 355 -4 5 1198 3221 254 44 30 chr3 80433339 80434184 -79165599 - Lx6 LINE L1 -708 6752 5896 5 1198 2327 229 33 0 chr3 80434208 80434693 -79165090 - RMER1B Other Other -15 1051 551 5 1198 555 229 92 16 chr3 80434755 80434954 -79164829 + RMER1B Other Other 52 415 -651 5 1198 3431 123 51 0 chr3 80435568 80436098 -79163685 - MT2B2 LTR ERVL 0 584 28 5 1198 1444 332 117 43 chr3 80436289 80437471 -79162312 + Lx8 LINE L1 6189 7457 -16 5 1198 22 0 0 0 chr3 80438095 80438117 -79161666 + AT_rich Low_complexity Low_complexity 1 22 0 5 1198 242 105 62 21 chr3 80438237 80438334 -79161449 + (TTTG)n Simple_repeat Simple_repeat 1 101 0 5 1198 296 263 13 13 chr3 80438930 80439007 -79160776 - Lx7 LINE L1 -542 7154 7078 5 1198 29342 118 16 6 chr3 80439339 80445134 -79154649 + L1_Mus2 LINE L1 715 6566 0 5 1198 309 284 72 21 chr3 80445442 80445539 -79154244 - ID_B1 SINE B4 -9 215 114 5 1198 357 43 0 0 chr3 80446046 80446093 -79153690 + (CAGA)n Simple_repeat Simple_repeat 2 48 0 5 1198 7885 47 8 1 chr3 80446140 80447776 -79152007 - L1Md_F2 LINE L1 -12 6570 4919 5 1198 8756 58 1 0 chr3 80447770 80448895 -79150888 + L1Md_F2 LINE L1 3720 4845 -1038 5 1198 222 248 9 18 chr3 80449364 80449475 -79150308 + GA-rich Low_complexity Low_complexity 5 114 0 5 1198 1708 321 115 20 chr3 80450824 80451635 -79148148 + Lx8 LINE L1 6444 7331 -142 5 1198 351 0 0 0 chr3 80451636 80451675 -79148108 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 5 1198 297 0 0 0 chr3 80451757 80451790 -79147993 + (TG)n Simple_repeat Simple_repeat 1 33 0 5 1198 30 0 0 0 chr3 80452905 80452935 -79146848 + AT_rich Low_complexity Low_complexity 1 30 0 5 1198 318 26 0 0 chr3 80453023 80453062 -79146721 + (CA)n Simple_repeat Simple_repeat 2 40 0 5 1198 1208 264 110 39 chr3 80453063 80453572 -79146211 - Lx9 LINE L1 -218 7426 6882 5 1198 1558 188 6 19 chr3 80454899 80455214 -79144569 + RLTR10E LTR ERVK 1 311 0 6 1198 345 328 31 31 chr3 80456926 80457055 -79142728 + MLT2B3 LTR ERVL 1 129 -425 6 1198 422 328 260 16 chr3 80457662 80457976 -79141807 + MLT1A1 LTR MaLR 15 404 -4 6 1198 455 351 38 136 chr3 80458005 80458374 -79141409 + MLT-int LTR MaLR 550 882 -853 6 1198 580 299 92 4 chr3 80458549 80458777 -79141006 + MLT-int LTR MaLR 1437 1684 -51 6 1198 324 0 0 0 chr3 80458789 80458825 -79140958 + (TC)n Simple_repeat Simple_repeat 2 37 0 6 1198 436 289 67 34 chr3 80458989 80459168 -79140615 + MLT1A1 LTR MaLR 216 400 -8 6 1198 362 287 139 36 chr3 80459616 80459793 -79139990 + L1M2 LINE L1 5416 5612 -679 6 1198 189 0 0 0 chr3 80459793 80459814 -79139969 + (CA)n Simple_repeat Simple_repeat 2 22 0 6 1198 465 34 0 0 chr3 80459814 80459872 -79139911 + (GA)n Simple_repeat Simple_repeat 2 60 0 6 1198 362 286 150 39 chr3 80459872 80459946 -79139837 + L1M2 LINE L1 5613 5696 -595 6 1198 185 0 0 39 chr3 80460143 80460169 -79139614 + (GAAA)n Simple_repeat Simple_repeat 4 28 0 6 1198 416 201 52 0 chr3 80460170 80460285 -79139498 + GA-rich Low_complexity Low_complexity 4 125 0 6 1198 1151 107 6 0 chr3 80460285 80460463 -79139320 + (GGAA)n Simple_repeat Simple_repeat 2 180 0 6 1198 416 201 52 0 chr3 80460463 80460481 -79139302 + polypurine Low_complexity Low_complexity 126 143 0 6 1198 21 0 0 0 chr3 80460948 80460969 -79138814 + AT_rich Low_complexity Low_complexity 1 21 0 6 1198 552 256 74 0 chr3 80460975 80461096 -79138687 + B3A SINE B2 3 132 -66 6 1198 891 28 0 0 chr3 80461113 80461219 -79138564 + (CA)n Simple_repeat Simple_repeat 1 106 0 6 1198 909 35 42 0 chr3 80461936 80462078 -79137705 + (TG)n Simple_repeat Simple_repeat 1 148 0 6 1198 7964 50 6 1 chr3 80463025 80464082 -79135701 - L1Md_F2 LINE L1 -1 6581 5520 6 1198 265 267 42 53 chr3 80464121 80464216 -79135567 - PB1D7 SINE Alu -8 112 19 6 1198 333 0 0 0 chr3 80464218 80464255 -79135528 + (CA)n Simple_repeat Simple_repeat 2 38 0 6 1198 1212 229 28 133 chr3 80464927 80465325 -79134458 + MTD LTR MaLR 59 414 -5 6 1198 831 271 35 56 chr3 80465327 80465558 -79134225 + MT2A LTR ERVL 1 226 -307 6 1198 357 24 0 0 chr3 80465656 80465698 -79134085 + (CA)n Simple_repeat Simple_repeat 1 42 0 6 1198 213 184 41 0 chr3 80466035 80466084 -79133699 + (TAGA)n Simple_repeat Simple_repeat 2 52 0 6 1198 285 29 0 0 chr3 80466232 80466266 -79133517 + (CA)n Simple_repeat Simple_repeat 1 34 0 6 1198 1156 161 0 0 chr3 80466810 80466990 -79132793 + (TCTCTG)n Simple_repeat Simple_repeat 1 180 0 6 1198 203 146 24 0 chr3 80467323 80467364 -79132419 + CT-rich Low_complexity Low_complexity 1 42 0 6 1198 458 333 99 36 chr3 80468012 80468507 -79131276 - L1MD1 LINE L1 -401 5841 5316 6 1198 871 237 11 5 chr3 80468656 80468847 -79130936 - B3A SINE B2 -6 192 1 6 1198 221 159 0 0 chr3 80468868 80468912 -79130871 + T-rich Low_complexity Low_complexity 1 44 0 6 1198 309 351 62 45 chr3 80469669 80469683 -79130100 + B4 SINE B4 65 99 -193 6 1198 456 267 0 62 chr3 80469683 80469795 -79129988 + B1_Mur2 SINE Alu 2 106 -43 6 1198 309 351 62 45 chr3 80469795 80469848 -79129935 + B4 SINE B4 100 246 -46 6 1198 262 228 48 115 chr3 80470220 80470324 -79129459 - PB1D7 SINE Alu -1 119 23 6 1198 610 325 12 6 chr3 80470404 80470565 -79129218 + RSINE1 SINE B4 4 165 0 6 1198 348 208 0 38 chr3 80470646 80470726 -79129057 + PB1D7 SINE Alu 44 120 0 6 1198 180 0 0 0 chr3 80470726 80470746 -79129037 + (A)n Simple_repeat Simple_repeat 1 20 0 6 1198 22 35 0 0 chr3 80471232 80471261 -79128522 + AT_rich Low_complexity Low_complexity 1 29 0 6 1198 227 265 121 22 chr3 80472738 80472962 -79126821 + L1MEc LINE L1 1326 1571 -4829 6 1198 234 146 0 35 chr3 80473280 80473337 -79126446 + (TA)n Simple_repeat Simple_repeat 1 55 0 6 1198 549 0 0 0 chr3 80473434 80473495 -79126288 + (CA)n Simple_repeat Simple_repeat 2 62 0 6 1198 301 300 58 8 chr3 80473910 80474031 -79125752 - Lx8 LINE L1 -555 6918 6792 6 1198 7137 103 0 10 chr3 80474027 80475089 -79124694 - L1_Mm LINE L1 -968 4915 3865 6 1198 6317 106 3 0 chr3 80475075 80475980 -79123803 + L1_Mm LINE L1 4918 5825 -58 6 1198 3327 81 2 0 chr3 80475980 80476414 -79123369 + L1_Mus1 LINE L1 6130 6564 -3 6 1198 267 222 0 0 chr3 80476786 80476867 -79122916 + (CA)n Simple_repeat Simple_repeat 2 82 0 6 1198 198 143 0 0 chr3 80477270 80477305 -79122478 + (T)n Simple_repeat Simple_repeat 1 35 0 6 1199 309 330 0 0 chr3 80478651 80478760 -79121023 + CT-rich Low_complexity Low_complexity 4 112 0 6 1199 498 46 0 0 chr3 80479235 80479300 -79120483 + (CA)n Simple_repeat Simple_repeat 2 66 0 6 1199 265 313 0 25 chr3 80480344 80480462 -79119321 + CT-rich Low_complexity Low_complexity 2 116 0 6 1199 244 398 59 30 chr3 80481774 80481875 -79117908 + B1F1 SINE Alu 2 105 -44 6 1199 357 287 44 7 chr3 80481925 80482062 -79117721 + Lx9 LINE L1 7297 7438 -206 6 1199 637 244 0 0 chr3 80482082 80482213 -79117570 + B1_Mur4 SINE Alu 7 137 -13 6 1199 194 62 0 30 chr3 80482215 80482248 -79117535 + (TAAA)n Simple_repeat Simple_repeat 3 34 0 6 1199 225 0 0 0 chr3 80482306 80482331 -79117452 + (TG)n Simple_repeat Simple_repeat 2 26 0 6 1199 1908 234 28 16 chr3 80482600 80483034 -79116749 + ETnERV2-int LTR ERVK 6644 7082 -324 6 1199 319 232 95 101 chr3 80483183 80483351 -79116432 + RLTR43A LTR ERVK 198 364 0 6 1199 21 0 0 0 chr3 80485331 80485352 -79114431 + AT_rich Low_complexity Low_complexity 1 21 0 6 1199 22 35 0 0 chr3 80486500 80486529 -79113254 + AT_rich Low_complexity Low_complexity 1 29 0 6 1199 290 273 54 75 chr3 80488983 80489169 -79110614 + B3A SINE B2 1 182 -16 6 1199 22 0 0 0 chr3 80489780 80489802 -79109981 + AT_rich Low_complexity Low_complexity 1 22 0 6 1199 21 0 0 0 chr3 80490616 80490637 -79109146 + AT_rich Low_complexity Low_complexity 1 21 0 6 1199 21 57 0 0 chr3 80491489 80491524 -79108259 + AT_rich Low_complexity Low_complexity 1 35 0 6 1199 414 16 15 31 chr3 80491945 80492010 -79107773 + (TTTTG)n Simple_repeat Simple_repeat 2 65 0 6 1199 28 29 0 0 chr3 80492072 80492107 -79107676 + AT_rich Low_complexity Low_complexity 1 35 0 6 1199 197 223 21 21 chr3 80494693 80494789 -79104994 + GA-rich Low_complexity Low_complexity 4 99 0 6 1199 858 164 10 13 chr3 80494815 80495121 -79104662 + GA-rich Low_complexity Low_complexity 1 304 0 6 1199 201 162 0 0 chr3 80495405 80495442 -79104341 + T-rich Low_complexity Low_complexity 1 37 0 6 1199 665 262 29 0 chr3 80496948 80497120 -79102663 - ORR1D1 LTR MaLR -192 182 6 6 1199 180 152 0 0 chr3 80498318 80498351 -79101432 + T-rich Low_complexity Low_complexity 1 33 0 6 1199 994 160 6 0 chr3 80498591 80498766 -79101017 + B2_Mm2 SINE B2 2 177 -18 6 1199 399 222 30 0 chr3 80499260 80499359 -79100424 - Lx9 LINE L1 -5 7639 7538 6 1199 39 60 0 0 chr3 80499396 80499463 -79100320 + AT_rich Low_complexity Low_complexity 1 67 0 6 1199 1074 274 24 27 chr3 80499613 80499906 -79099877 - B4A SINE B4 0 292 1 6 1199 233 261 21 72 chr3 80502226 80502332 -79097451 - ID4 SINE ID -49 103 5 1 1199 214 355 8 55 chr3 80502355 80502483 -79097300 - B1_Mus1 SINE Alu -5 143 22 2 1199 22 35 0 0 chr3 80503743 80503772 -79096011 + AT_rich Low_complexity Low_complexity 1 29 0 3 1199 2045 82 0 4 chr3 80504049 80504318 -79095465 - Lx LINE L1 -325 6329 6062 4 1199 1649 150 0 7 chr3 80504319 80504595 -79095188 + Lx LINE L1 6378 6651 -3 4 1199 200 122 24 0 chr3 80506224 80506265 -79093518 + (CAGAGA)n Simple_repeat Simple_repeat 4 45 0 5 1199 189 0 0 0 chr3 80507413 80507434 -79092349 + (TAA)n Simple_repeat Simple_repeat 3 23 0 6 1199 1180 86 6 6 chr3 80508515 80508691 -79091092 + (TTC)n Simple_repeat Simple_repeat 2 177 0 7 1199 21 0 0 0 chr3 80508998 80509019 -79090764 + AT_rich Low_complexity Low_complexity 1 21 0 8 1199 270 0 0 0 chr3 80509252 80509282 -79090501 + (TA)n Simple_repeat Simple_repeat 2 31 0 9 1199 491 0 17 0 chr3 80509283 80509342 -79090441 + (GA)n Simple_repeat Simple_repeat 1 60 0 1 1199 235 323 141 37 chr3 80513639 80513774 -79086009 - B1F SINE Alu 0 149 1 1 1199 24 32 0 0 chr3 80513853 80513884 -79085899 + AT_rich Low_complexity Low_complexity 1 31 0 1 1199 21 0 0 0 chr3 80513968 80513989 -79085794 + AT_rich Low_complexity Low_complexity 1 21 0 1 1199 4200 92 27 3 chr3 80515872 80516462 -79083321 - L1_Mus4 LINE L1 0 6636 6033 1 1199 207 311 93 19 chr3 80516549 80516657 -79083126 + L3 LINE CR1 1693 1808 -2681 1 1199 1110 68 0 14 chr3 80518065 80518201 -79081582 + B1_Mus2 SINE Alu 1 135 -12 1 1199 243 0 0 0 chr3 80518201 80518228 -79081555 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 1199 1110 68 0 14 chr3 80518228 80518239 -79081544 + B1_Mus2 SINE Alu 136 146 -1 1 1199 856 204 0 23 chr3 80518746 80518917 -79080866 + URR1B DNA MER1_type 59 225 0 1 1199 323 323 29 59 chr3 80518917 80518959 -79080824 - CYRA11_Mm Unknown Y-chromosome -449 168 133 1 1199 240 59 0 0 chr3 80519917 80519951 -79079832 + (CA)n Simple_repeat Simple_repeat 2 35 0 2 1199 398 290 52 69 chr3 80520185 80520223 -79079560 - CYRA11_Mm Unknown Y-chromosome -217 400 172 2 1199 1055 155 16 1 chr3 80520223 80520418 -79079365 + URR1B DNA MER1_type 9 224 -1 2 1199 801 160 0 0 chr3 80521412 80521556 -79078227 + A-rich Low_complexity Low_complexity 1 144 0 2 1199 198 0 0 0 chr3 80521671 80521693 -79078090 + (T)n Simple_repeat Simple_repeat 1 22 0 2 1199 4639 36 2 0 chr3 80522393 80522946 -79076837 + L1Md_T LINE L1 6029 6582 0 2 1199 180 364 125 33 chr3 80523191 80523734 -79076049 - L2 LINE L2 -357 3062 2470 2 1199 228 184 0 0 chr3 80525308 80525357 -79074426 + (TA)n Simple_repeat Simple_repeat 1 49 0 2 1199 371 341 100 14 chr3 80526657 80526797 -79072986 + B3A SINE B2 23 174 -24 2 1199 27 0 0 0 chr3 80526801 80526828 -79072955 + AT_rich Low_complexity Low_complexity 1 27 0 2 1199 1396 51 0 0 chr3 80526838 80527016 -79072767 - B2_Mm1a SINE B2 -3 190 13 3 1199 24 53 0 0 chr3 80527020 80527058 -79072725 + AT_rich Low_complexity Low_complexity 1 38 0 3 1199 251 289 22 11 chr3 80528457 80528548 -79071235 + GA-rich Low_complexity Low_complexity 4 95 0 3 1199 21 0 0 0 chr3 80530157 80530178 -79069605 + AT_rich Low_complexity Low_complexity 1 21 0 3 1199 383 306 45 0 chr3 80530567 80530701 -79069082 + B3 SINE B2 77 216 0 3 1199 268 269 0 37 chr3 80531534 80531615 -79068168 - Tigger5 DNA MER2_type -35 2371 2294 3 1199 362 248 143 0 chr3 80531689 80531794 -79067989 - Tigger5 DNA MER2_type -2256 150 31 3 1199 341 257 46 28 chr3 80531853 80531961 -79067822 - PB1D7 SINE Alu -1 119 10 3 1199 221 250 229 49 chr3 80531961 80531975 -79067808 - ID_B1 SINE B4 -2 222 79 3 1199 378 0 0 0 chr3 80533672 80533714 -79066069 + (CA)n Simple_repeat Simple_repeat 2 43 0 3 1199 23 33 0 0 chr3 80534278 80534308 -79065475 + AT_rich Low_complexity Low_complexity 1 30 0 3 1199 22 0 0 0 chr3 80534406 80534428 -79065355 + AT_rich Low_complexity Low_complexity 1 22 0 4 1199 690 100 0 0 chr3 80534716 80534816 -79064967 + (TC)n Simple_repeat Simple_repeat 1 100 0 4 1199 366 23 0 0 chr3 80534828 80534871 -79064912 + (CA)n Simple_repeat Simple_repeat 1 43 0 4 1199 1300 194 144 15 chr3 80535196 80535536 -79064247 + ORR1C2 LTR MaLR 1 384 0 4 1199 234 91 18 35 chr3 80536795 80536852 -79062931 + (TTTTG)n Simple_repeat Simple_repeat 2 57 0 4 1199 300 333 58 97 chr3 80537246 80537698 -79062085 + L1MC5 LINE L1 6785 7218 -743 4 1199 247 255 0 19 chr3 80539346 80539398 -79060385 - tRNA-Met tRNA tRNA -25 51 1 4 1199 22 0 0 0 chr3 80539804 80539826 -79059957 + AT_rich Low_complexity Low_complexity 1 22 0 4 1199 4128 122 73 1 chr3 80540166 80540812 -79058971 + Lx2B LINE L1 6306 6997 -3 4 1199 192 289 0 0 chr3 80542816 80542868 -79056915 + L2a LINE L2 3357 3408 -18 4 1199 236 317 53 86 chr3 80543161 80543313 -79056470 - L2 LINE L2 -501 2918 2772 5 1199 26 50 0 0 chr3 80545424 80545464 -79054319 + AT_rich Low_complexity Low_complexity 1 40 0 5 1199 26 50 0 0 chr3 80545550 80545590 -79054193 + AT_rich Low_complexity Low_complexity 1 40 0 5 1199 220 208 0 65 chr3 80545597 80545674 -79054109 + (TTTG)n Simple_repeat Simple_repeat 1 72 0 5 1199 330 333 22 39 chr3 80545674 80545792 -79053991 - Lx9 LINE L1 -213 7431 7321 5 1199 378 0 0 0 chr3 80545792 80545834 -79053949 + (TTTA)n Simple_repeat Simple_repeat 2 43 0 5 1199 330 333 22 39 chr3 80545834 80545896 -79053887 - Lx9 LINE L1 -324 7320 7256 5 1199 656 319 24 28 chr3 80545984 80546271 -79053512 + B4A SINE B4 2 287 -5 5 1199 35347 36 0 0 chr3 80546343 80552014 -79047769 + L1Md_T LINE L1 1 5589 -297 5 1199 9005 4 0 0 chr3 80552014 80553010 -79046773 + L1Md_T LINE L1 5590 6585 0 5 1199 442 349 56 15 chr3 80553529 80553724 -79046059 - MIR SINE MIR -38 224 22 5 1199 744 326 60 76 chr3 80555708 80556090 -79043693 - MTE-int LTR MaLR -48 1532 1157 5 1199 388 398 47 30 chr3 80556527 80556866 -79042917 - MTE-int LTR MaLR -691 889 545 5 1199 278 324 10 0 chr3 80556915 80557017 -79042766 - MTE-int LTR MaLR -1115 465 363 5 1199 834 281 49 72 chr3 80557075 80557520 -79042263 + RLTR20D LTR ERVK 46 564 -4 6 1199 534 345 86 22 chr3 80557529 80557796 -79041987 - MTE-int LTR MaLR -1296 284 1 5 1199 203 0 37 0 chr3 80560990 80561017 -79038766 + (CAAAAA)n Simple_repeat Simple_repeat 3 30 0 6 1199 7152 81 5 8 chr3 80561389 80562367 -79037416 - L1_Mus3 LINE L1 0 6638 5664 6 1199 23 33 0 0 chr3 80563688 80563718 -79036065 + AT_rich Low_complexity Low_complexity 1 30 0 6 1199 21 57 0 0 chr3 80565220 80565255 -79034528 + AT_rich Low_complexity Low_complexity 1 35 0 6 1199 444 37 0 0 chr3 80565347 80565401 -79034382 + (TA)n Simple_repeat Simple_repeat 1 54 0 6 1199 369 222 0 0 chr3 80565811 80565910 -79033873 + (CA)n Simple_repeat Simple_repeat 1 99 0 6 1199 215 61 30 0 chr3 80566512 80566545 -79033238 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 6 1199 2496 159 43 4 chr3 80566568 80567028 -79032755 - RLTR31_Mm LTR ERVK 0 561 84 6 1199 257 260 0 64 chr3 80567522 80567600 -79032183 - ID4 SINE ID -2 81 9 6 1199 23 0 0 0 chr3 80567711 80567734 -79032049 + AT_rich Low_complexity Low_complexity 1 23 0 7 1199 249 398 45 8 chr3 80568489 80568735 -79031048 + MLT1H-int LTR MaLR 74 328 -1081 7 1199 6221 62 1 12 chr3 80568760 80569576 -79030207 + L1Md_F2 LINE L1 5762 6568 -14 7 1199 419 287 11 0 chr3 80569682 80569776 -79030007 + B3A SINE B2 48 142 -56 7 1199 1351 294 124 18 chr3 80569908 80571047 -79028736 - L1MCa LINE L1 -1328 4993 3735 7 1199 1403 204 141 11 chr3 80571061 80571430 -79028353 - MTD LTR MaLR 0 419 6 7 1199 387 286 90 25 chr3 80571546 80571925 -79027858 - L1MCa LINE L1 -3822 2499 2095 7 1199 313 359 162 7 chr3 80571931 80572080 -79027703 - L1MCa LINE L1 -5852 656 494 7 1199 4896 23 0 0 chr3 80572080 80572647 -79027136 + L1Md_A LINE L1 6016 6582 0 7 1199 313 359 162 7 chr3 80572647 80572769 -79027014 - L1MCa LINE L1 -6015 493 345 7 1199 229 347 80 66 chr3 80572873 80573086 -79026697 - L1MCa LINE L1 -6290 218 3 7 1199 221 272 0 18 chr3 80574781 80574852 -79024931 + MIRc SINE MIR 77 144 -64 7 1199 202 333 0 28 chr3 80575942 80576013 -79023770 + (CATA)n Simple_repeat Simple_repeat 4 72 0 7 1199 1463 296 79 9 chr3 80577310 80577852 -79021931 + Lx8 LINE L1 6886 7465 -8 7 1199 249 33 0 0 chr3 80577855 80577885 -79021898 + (TA)n Simple_repeat Simple_repeat 2 31 0 8 1199 514 85 0 0 chr3 80577925 80578007 -79021776 - L1_Mus3 LINE L1 -1 6637 6556 8 1199 676 312 0 24 chr3 80578049 80578262 -79021521 + Lx6 LINE L1 7227 7434 -26 8 1199 271 251 102 43 chr3 80580836 80580941 -79018842 + B1F1 SINE Alu 9 123 -26 8 1199 1585 52 0 0 chr3 80582137 80582329 -79017454 + B2_Mm1a SINE B2 2 193 0 8 1199 405 116 0 0 chr3 80583201 80583270 -79016513 + (TG)n Simple_repeat Simple_repeat 2 70 0 8 1199 450 275 124 8 chr3 80583271 80583392 -79016391 - RSINE1 SINE B4 -22 143 9 8 1199 425 295 67 42 chr3 80583488 80583771 -79016012 - Charlie1a DNA MER1_type -411 1044 755 8 1199 269 268 0 14 chr3 80583942 80584014 -79015769 + CT-rich Low_complexity Low_complexity 2 72 0 8 1199 244 132 14 29 chr3 80585840 80585910 -79013873 + (TTATA)n Simple_repeat Simple_repeat 1 69 0 8 1199 917 153 0 12 chr3 80587526 80587698 -79012085 + GA-rich Low_complexity Low_complexity 3 172 0 9 1199 1595 176 95 29 chr3 80587918 80588264 -79011519 + MTC LTR MaLR 9 377 -44 9 1199 468 328 84 32 chr3 80589600 80589909 -79009874 - MER82 DNA MER2_type -134 519 195 9 1199 739 197 8 0 chr3 80589928 80590055 -79009728 - B1_Mus2 SINE Alu -10 137 10 9 1199 21 57 0 0 chr3 80590357 80590392 -79009391 + AT_rich Low_complexity Low_complexity 1 35 0 9 1199 843 189 150 0 chr3 80590630 80590810 -79008973 + B3 SINE B2 4 210 -6 9 1199 225 163 0 0 chr3 80592110 80592159 -79007624 + (CAAA)n Simple_repeat Simple_repeat 4 52 0 9 1199 453 169 0 0 chr3 80592408 80592491 -79007292 + (TA)n Simple_repeat Simple_repeat 1 83 0 9 1199 274 338 27 0 chr3 80592630 80592704 -79007079 + ID4 SINE ID 7 82 -1 9 1199 463 278 23 16 chr3 80593202 80593215 -79006568 - Lx8 LINE L1 -133 7340 7329 9 1199 1185 47 0 0 chr3 80593215 80593363 -79006420 + (TC)n Simple_repeat Simple_repeat 1 148 0 1 1199 463 278 23 16 chr3 80593363 80593477 -79006306 - Lx8 LINE L1 -145 7328 7212 9 1199 23 33 0 0 chr3 80595430 80595460 -79004323 + AT_rich Low_complexity Low_complexity 1 30 0 1 1199 246 116 0 0 chr3 80596443 80596486 -79003297 + (TCTCTG)n Simple_repeat Simple_repeat 2 44 0 1 1199 396 0 0 0 chr3 80596488 80596532 -79003251 + (CA)n Simple_repeat Simple_repeat 2 45 0 1 1199 222 276 69 0 chr3 80596882 80596940 -79002843 + B1F SINE Alu 18 79 -70 1 1199 28 61 0 0 chr3 80597026 80597075 -79002708 + AT_rich Low_complexity Low_complexity 1 49 0 1 1199 21 0 0 0 chr3 80598411 80598432 -79001351 + AT_rich Low_complexity Low_complexity 1 21 0 1 1199 363 127 0 0 chr3 80598821 80598884 -79000899 + (CA)n Simple_repeat Simple_repeat 2 64 0 1 1199 41 36 0 0 chr3 80599071 80599126 -79000657 + AT_rich Low_complexity Low_complexity 1 55 0 1 1199 1077 97 0 7 chr3 80599877 80600022 -78999761 + B1_Mus1 SINE Alu 5 148 0 1 1199 199 0 31 31 chr3 80600023 80600055 -78999728 + (TAAAAA)n Simple_repeat Simple_repeat 3 34 0 1 1199 276 30 0 0 chr3 80600538 80600571 -78999212 + (CA)n Simple_repeat Simple_repeat 2 34 0 1 1199 336 83 0 0 chr3 80600576 80600624 -78999159 + (TG)n Simple_repeat Simple_repeat 2 49 0 1 1199 21 0 0 0 chr3 80600676 80600697 -78999086 + AT_rich Low_complexity Low_complexity 1 21 0 1 1199 22 80 0 0 chr3 80600903 80600953 -78998830 + AT_rich Low_complexity Low_complexity 1 50 0 1 1199 1040 133 0 6 chr3 80601541 80601722 -78998061 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 1 1199 249 196 0 0 chr3 80601909 80601965 -78997818 + A-rich Low_complexity Low_complexity 1 56 0 1 1199 22 35 0 0 chr3 80603655 80603684 -78996099 + AT_rich Low_complexity Low_complexity 1 29 0 1 1199 444 246 24 41 chr3 80603691 80603814 -78995969 - RSINE1 SINE B4 -33 132 12 1 1199 672 129 0 0 chr3 80603846 80603970 -78995813 + (TC)n Simple_repeat Simple_repeat 1 124 0 1 1199 504 32 0 0 chr3 80605424 80605486 -78994297 + (CA)n Simple_repeat Simple_repeat 2 63 0 1 1199 357 125 0 0 chr3 80606652 80606708 -78993075 + (CA)n Simple_repeat Simple_repeat 1 56 0 1 1199 489 47 0 0 chr3 80608245 80608309 -78991474 + (TG)n Simple_repeat Simple_repeat 1 64 0 1 1200 22 56 0 0 chr3 80609589 80609625 -78990158 + AT_rich Low_complexity Low_complexity 1 36 0 1 1200 27 29 0 0 chr3 80609751 80609785 -78989998 + AT_rich Low_complexity Low_complexity 1 34 0 1 1200 230 188 30 30 chr3 80610256 80610322 -78989461 + (TATATG)n Simple_repeat Simple_repeat 3 68 0 1 1200 1175 54 7 0 chr3 80610472 80610619 -78989164 + B1_Mus1 SINE Alu 1 148 0 1 1200 208 49 48 24 chr3 80610619 80610661 -78989122 + (CAAAA)n Simple_repeat Simple_repeat 1 43 0 1 1200 1018 282 127 6 chr3 80610770 80611102 -78988681 + MTD LTR MaLR 48 419 0 1 1200 23 68 0 0 chr3 80611372 80611416 -78988367 + AT_rich Low_complexity Low_complexity 1 44 0 1 1200 578 264 19 72 chr3 80612040 80612248 -78987535 + B3A SINE B2 2 198 0 1 1200 1051 331 26 12 chr3 80612295 80612640 -78987143 + MTE2b LTR MaLR 3 352 -27 1 1200 700 324 68 41 chr3 80612756 80613361 -78986422 + L1MB1 LINE L1 5520 6140 -28 1 1200 342 217 16 8 chr3 80614508 80614629 -78985154 + CT-rich Low_complexity Low_complexity 1 122 0 1 1200 1008 53 0 0 chr3 80614633 80614764 -78985019 + (TATATG)n Simple_repeat Simple_repeat 2 132 0 1 1200 364 298 18 0 chr3 80614769 80614883 -78984900 + CT-rich Low_complexity Low_complexity 4 119 0 1 1200 291 381 35 35 chr3 80615175 80615463 -78984320 - ERVL-int LTR ERVL -2144 3613 3326 1 1200 350 319 78 0 chr3 80618201 80618342 -78981441 - B4A SINE B4 -140 152 1 1 1200 22 56 0 0 chr3 80618357 80618393 -78981390 + AT_rich Low_complexity Low_complexity 1 36 0 1 1200 24 0 0 0 chr3 80618452 80618476 -78981307 + AT_rich Low_complexity Low_complexity 1 24 0 1 1200 23 0 0 0 chr3 80618760 80618783 -78981000 + AT_rich Low_complexity Low_complexity 1 23 0 1 1200 946 99 120 0 chr3 80619291 80619433 -78980350 + B2_Mm2 SINE B2 3 161 -34 1 1200 333 0 0 0 chr3 80619434 80619471 -78980312 + (TAAA)n Simple_repeat Simple_repeat 1 37 0 1 1200 222 205 34 124 chr3 80621024 80621113 -78978670 + PB1 SINE Alu 45 125 -2 1 1200 231 283 101 50 chr3 80621815 80621934 -78977849 + MamGypLTR1b LTR Gypsy 611 735 -47 1 1200 317 209 116 0 chr3 80622206 80622292 -78977491 + Ricksha_c DNA MuDR 812 907 -1141 1 1200 771 283 67 0 chr3 80622384 80622624 -78977159 - Lx6 LINE L1 -39 7421 7166 1 1200 352 291 12 90 chr3 80623363 80623529 -78976254 - RSINE1 SINE B4 -11 154 2 1 1200 528 278 163 10 chr3 80623533 80623956 -78975827 - L1M2 LINE L1 -419 5881 5284 1 1200 355 434 48 0 chr3 80624003 80624192 -78975591 - B4A SINE B4 0 292 95 1 1200 212 235 0 0 chr3 80624279 80624330 -78975453 - B4A SINE B4 -241 51 1 1 1200 885 280 101 14 chr3 80624384 80624812 -78974971 - L1M2 LINE L1 -836 5307 4843 1 1200 1231 320 52 42 chr3 80624813 80625449 -78974334 + Lx8 LINE L1 6408 7049 -424 1 1200 370 283 53 39 chr3 80626822 80627028 -78972755 - Lx9 LINE L1 -1710 5934 5726 1 1200 755 242 109 10 chr3 80627048 80627240 -78972543 - B3 SINE B2 -5 211 1 1 1200 557 318 101 21 chr3 80628691 80629108 -78970675 - ORR1E-int LTR MaLR -1130 450 1 1 1200 252 273 56 11 chr3 80629129 80629218 -78970565 - ORR1E LTR MaLR -11 348 256 1 1200 365 123 27 0 chr3 80629309 80629382 -78970401 + (CAGA)n Simple_repeat Simple_repeat 2 76 0 1 1200 1689 205 17 51 chr3 80630353 80630765 -78969018 + RMER10B LTR ERVL 1 398 0 1 1200 1232 66 0 7 chr3 80630797 80631089 -78968694 + (GAA)n Simple_repeat Simple_repeat 1 289 0 1 1200 253 171 0 0 chr3 80631375 80631416 -78968367 - ORR1C2 LTR MaLR 0 384 344 1 1200 886 181 0 79 chr3 80631691 80631907 -78967876 - RMER10B LTR ERVL -1 397 199 1 1200 1120 185 14 82 chr3 80631913 80632195 -78967588 - RMER10B LTR ERVL -133 265 3 1 1200 21 0 0 0 chr3 80633062 80633083 -78966700 + AT_rich Low_complexity Low_complexity 1 21 0 1 1200 798 269 47 9 chr3 80633356 80633570 -78966213 + MTEa LTR MaLR 1 222 -157 1 1200 329 200 281 10 chr3 80633605 80633701 -78966082 + RMER10A LTR ERVL 1 122 -320 1 1200 2158 156 8 3 chr3 80633701 80634087 -78965696 - L1_Mur3 LINE L1 -1833 4047 3660 1 1200 1055 164 84 109 chr3 80634301 80634622 -78965161 + RMER10A LTR ERVL 130 442 0 1 1200 321 250 53 0 chr3 80634625 80634701 -78965082 + MTEa LTR MaLR 300 379 0 1 1200 883 246 77 0 chr3 80634708 80634956 -78964827 + L1_Mur3 LINE L1 4037 4303 -1577 1 1200 1057 86 79 0 chr3 80634962 80635114 -78964669 - B2_Mm2 SINE B2 -30 165 2 1 1200 1537 180 139 24 chr3 80635129 80635539 -78964244 + L1_Mur3 LINE L1 4301 4757 -1123 1 1200 476 227 43 72 chr3 80635739 80635981 -78963802 + L1M3 LINE L1 4123 4364 -1782 1 1200 1786 156 12 54 chr3 80636077 80636265 -78963518 - ORR1A3 LTR MaLR -8 318 138 1 1200 1218 118 23 32 chr3 80636265 80636483 -78963300 - Lx2 LINE L1 -6 6991 6776 1 1200 1786 156 12 54 chr3 80636483 80636626 -78963157 - ORR1A3 LTR MaLR -189 137 2 1 1200 2616 327 41 17 chr3 80636709 80637744 -78962039 - Lx8 LINE L1 -167 7306 6248 1 1200 471 113 0 0 chr3 80637744 80637815 -78961968 + (TA)n Simple_repeat Simple_repeat 2 72 0 1 1200 315 0 0 0 chr3 80637815 80637849 -78961934 + (TG)n Simple_repeat Simple_repeat 2 36 0 1 1200 1674 329 84 44 chr3 80637849 80637987 -78961796 - Lx7 LINE L1 -1458 6238 6073 1 1200 657 252 32 110 chr3 80638044 80638207 -78961576 + B3A SINE B2 9 162 -31 1 1200 258 106 0 0 chr3 80638207 80638254 -78961529 + (CAGA)n Simple_repeat Simple_repeat 4 50 0 1 1200 488 251 32 112 chr3 80638254 80638280 -78961503 + B2_Mm1t SINE B2 163 183 -10 1 1200 296 326 102 5 chr3 80638504 80638720 -78961063 + L1M3 LINE L1 4656 4892 -1251 1 1200 849 92 0 0 chr3 80638733 80638853 -78960930 + (GAA)n Simple_repeat Simple_repeat 1 120 0 1 1200 802 298 78 25 chr3 80638857 80638939 -78960844 + L1M3 LINE L1 4885 4966 -1174 1 1200 378 0 0 0 chr3 80638939 80638981 -78960802 + (TA)n Simple_repeat Simple_repeat 1 42 0 1 1200 802 298 78 25 chr3 80638981 80639126 -78960657 + L1M3 LINE L1 4967 5122 -1018 1 1200 4224 126 24 6 chr3 80639126 80639789 -78959994 + Lx LINE L1 5979 6653 -1 1 1200 802 281 78 15 chr3 80639789 80640065 -78959718 + L1M3 LINE L1 5123 5419 -893 1 1200 4115 79 26 0 chr3 80640726 80641296 -78958487 + L1_Mus3 LINE L1 6053 6637 -1 1 1200 27 0 0 0 chr3 80641300 80641327 -78958456 + AT_rich Low_complexity Low_complexity 1 27 0 1 1200 245 154 39 0 chr3 80641961 80642013 -78957770 + (TATG)n Simple_repeat Simple_repeat 1 54 0 1 1200 22 0 0 0 chr3 80642057 80642079 -78957704 + AT_rich Low_complexity Low_complexity 1 22 0 1 1200 324 217 12 0 chr3 80642798 80642881 -78956902 - Tigger14a DNA MER2_type -107 217 134 1 1200 550 319 14 0 chr3 80644554 80644692 -78955091 - RSINE1 SINE B4 -17 148 9 1 1200 491 297 109 7 chr3 80645892 80646059 -78953724 - B3A SINE B2 -34 182 9 1 1200 373 289 75 62 chr3 80646216 80646456 -78953327 + L1MC4 LINE L1 7792 8034 -8 1 1200 21 0 0 0 chr3 80647819 80647840 -78951943 + AT_rich Low_complexity Low_complexity 1 21 0 1 1200 1312 104 16 5 chr3 80649914 80650107 -78949676 + B2_Mm2 SINE B2 1 195 0 1 1200 238 204 0 36 chr3 80652069 80652125 -78947658 + GA-rich Low_complexity Low_complexity 1 54 0 1 1200 362 342 166 31 chr3 80652129 80652375 -78947408 + L1MDa LINE L1 112 391 -6242 1 1200 447 19 0 0 chr3 80652375 80652427 -78947356 + (CA)n Simple_repeat Simple_repeat 1 52 0 1 1200 423 0 0 0 chr3 80652427 80652473 -78947310 + (GA)n Simple_repeat Simple_repeat 2 48 0 1 1200 354 23 0 0 chr3 80652474 80652517 -78947266 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 1200 362 342 166 31 chr3 80652517 80652623 -78947160 + L1MDa LINE L1 392 514 -6119 1 1200 644 260 181 30 chr3 80652676 80653208 -78946575 + L1MDa LINE L1 830 1441 -5192 1 1200 315 337 30 0 chr3 80653261 80653430 -78946353 + L1MDa LINE L1 1780 1953 -4680 1 1200 347 220 60 0 chr3 80653623 80653723 -78946060 - L1MDa LINE L1 -5133 1500 1395 1 1200 375 23 0 0 chr3 80653866 80653910 -78945873 + (CA)n Simple_repeat Simple_repeat 2 45 0 1 1200 24 0 0 0 chr3 80656282 80656306 -78943477 + AT_rich Low_complexity Low_complexity 1 24 0 1 1200 180 326 56 118 chr3 80656487 80656682 -78943101 + L2a LINE L2 3241 3423 -3 1 1200 199 118 118 0 chr3 80656708 80656776 -78943007 + (CATATA)n Simple_repeat Simple_repeat 1 76 0 1 1200 290 342 74 33 chr3 80656815 80656936 -78942847 + B4A SINE B4 15 140 -152 1 1200 21 0 0 0 chr3 80657104 80657125 -78942658 + AT_rich Low_complexity Low_complexity 1 21 0 2 1200 475 252 166 81 chr3 80657137 80657469 -78942314 + RLTR9A LTR ERVK 1 360 -8 2 1200 24 0 0 0 chr3 80657648 80657672 -78942111 + AT_rich Low_complexity Low_complexity 1 24 0 2 1200 450 83 74 15 chr3 80657848 80657983 -78941800 + (TA)n Simple_repeat Simple_repeat 2 144 0 2 1200 1458 205 109 50 chr3 80658948 80659369 -78940414 + RLTR11B LTR ERVK 8 453 0 2 1200 2275 28 14 14 chr3 80660651 80660939 -78938844 + L1Md_F3 LINE L1 6297 6584 0 2 1200 331 287 107 19 chr3 80661033 80661136 -78938647 - PB1D10 SINE Alu 0 117 6 2 1200 252 122 0 0 chr3 80662001 80662042 -78937741 + (TA)n Simple_repeat Simple_repeat 2 42 0 2 1200 22 35 0 0 chr3 80662145 80662174 -78937609 + AT_rich Low_complexity Low_complexity 1 29 0 2 1200 217 75 50 0 chr3 80664839 80664879 -78934904 + (TA)n Simple_repeat Simple_repeat 2 43 0 2 1200 611 277 128 13 chr3 80666375 80666602 -78933181 - MER2 DNA MER2_type -3 342 90 2 1200 25 51 0 0 chr3 80666812 80666851 -78932932 + AT_rich Low_complexity Low_complexity 1 39 0 2 1200 468 172 256 8 chr3 80666994 80667111 -78932672 + B1F2 SINE Alu 2 147 -2 2 1200 267 265 0 0 chr3 80668066 80668168 -78931615 + (CA)n Simple_repeat Simple_repeat 1 102 0 2 1200 3994 68 21 4 chr3 80668581 80669100 -78930683 - L1_Mus1 LINE L1 -1 6566 6039 2 1200 21 0 0 0 chr3 80669913 80669934 -78929849 + AT_rich Low_complexity Low_complexity 1 21 0 2 1200 5784 203 66 11 chr3 80671750 80674117 -78925666 + Lx6 LINE L1 4953 7460 0 2 1200 836 284 26 126 chr3 80674766 80675076 -78924707 - B4 SINE B4 -2 290 12 2 1200 227 132 113 0 chr3 80676311 80676364 -78923419 - MLT1A0 LTR MaLR -49 418 360 2 1200 437 307 71 38 chr3 80676352 80676562 -78923221 - MLT1A0 LTR MaLR -126 239 23 2 1200 446 348 131 28 chr3 80677182 80677640 -78922143 - MLT1D LTR MaLR 0 505 1 2 1200 500 340 13 0 chr3 80677677 80677827 -78921956 + RSINE1 SINE B4 2 153 -12 2 1200 180 0 0 0 chr3 80679021 80679041 -78920742 + (CA)n Simple_repeat Simple_repeat 1 20 0 2 1200 377 54 18 0 chr3 80679779 80679835 -78919948 + (TG)n Simple_repeat Simple_repeat 2 58 0 2 1200 32 43 0 0 chr3 80680305 80680351 -78919432 + AT_rich Low_complexity Low_complexity 1 46 0 2 1200 675 262 40 17 chr3 80681293 80681468 -78918315 + B4 SINE B4 2 180 -112 2 1200 591 137 0 0 chr3 80681468 80681592 -78918191 + (TC)n Simple_repeat Simple_repeat 2 125 0 2 1200 213 39 0 0 chr3 80681592 80681618 -78918165 + (CA)n Simple_repeat Simple_repeat 1 26 0 2 1200 211 136 0 22 chr3 80684025 80684070 -78915713 + (TTTG)n Simple_repeat Simple_repeat 2 45 0 2 1200 324 0 0 0 chr3 80685832 80685868 -78913915 + (TG)n Simple_repeat Simple_repeat 2 37 0 2 1200 432 0 0 0 chr3 80685870 80685918 -78913865 + (GA)n Simple_repeat Simple_repeat 1 48 0 2 1200 411 269 102 22 chr3 80686298 80686435 -78913348 + B1F SINE Alu 1 148 -1 2 1200 324 0 0 0 chr3 80686991 80687027 -78912756 + (CA)n Simple_repeat Simple_repeat 2 37 0 2 1200 321 26 0 0 chr3 80687027 80687064 -78912719 + (CG)n Simple_repeat Simple_repeat 1 38 0 2 1200 805 199 98 6 chr3 80688787 80689087 -78910696 - ORR1D2 LTR MaLR 0 370 8 2 1200 362 269 72 48 chr3 80690221 80690346 -78909437 + RSINE1 SINE B4 4 131 -34 2 1200 237 65 0 0 chr3 80690355 80690386 -78909397 + (CA)n Simple_repeat Simple_repeat 2 32 0 2 1200 2118 263 121 38 chr3 80691837 80692686 -78907097 + L1M3 LINE L1 3080 4005 -2135 2 1200 770 196 185 0 chr3 80692686 80692875 -78906908 - URR1A DNA MER1_type -2 224 1 2 1200 2118 263 121 38 chr3 80692875 80692904 -78906879 + L1M3 LINE L1 4006 4025 -2115 2 1200 2104 129 17 40 chr3 80692904 80693324 -78906459 - RMER17C LTR ERVK 0 410 1 2 1200 2118 263 121 38 chr3 80693324 80693849 -78905934 + L1M3 LINE L1 4026 4600 -1540 2 1200 666 291 65 5 chr3 80693857 80694057 -78905726 + ID_B1 SINE B4 1 212 -12 2 1200 315 380 18 29 chr3 80694249 80694420 -78905363 - MTEa LTR MaLR -157 222 54 2 1200 699 269 20 49 chr3 80694514 80694760 -78905023 - Ricksha DNA MuDR -834 2412 2174 2 1200 321 68 0 0 chr3 80694788 80694832 -78904951 + (TG)n Simple_repeat Simple_repeat 2 45 0 2 1200 742 278 51 19 chr3 80694884 80695196 -78904587 + L1M3 LINE L1 4790 5111 -1029 2 1200 638 309 29 93 chr3 80695398 80695954 -78903829 + L1MA4 LINE L1 5471 5990 -310 2 1200 837 90 13 6 chr3 80696033 80696189 -78903594 + (CA)n Simple_repeat Simple_repeat 2 158 0 2 1200 417 304 62 0 chr3 80696304 80696416 -78903367 + B4A SINE B4 5 123 -169 2 1200 596 249 100 6 chr3 80696600 80696770 -78903013 + B3 SINE B2 31 216 0 2 1200 268 330 39 0 chr3 80697046 80697149 -78902634 + PB1D10 SINE Alu 1 107 -10 2 1200 245 280 9 0 chr3 80697214 80697321 -78902462 + GA-rich Low_complexity Low_complexity 1 108 0 2 1200 351 65 0 0 chr3 80698079 80698125 -78901658 + (CAAAA)n Simple_repeat Simple_repeat 2 47 0 2 1200 237 33 0 0 chr3 80698728 80698758 -78901025 + (T)n Simple_repeat Simple_repeat 1 30 0 2 1200 299 212 118 0 chr3 80698780 80698865 -78900918 - B1F SINE Alu -18 131 37 2 1200 41 58 0 0 chr3 80699624 80699693 -78900090 + AT_rich Low_complexity Low_complexity 1 69 0 2 1200 2346 134 21 26 chr3 80700043 80700465 -78899318 + BGLII LTR ERVK 2 421 0 2 1200 706 320 20 5 chr3 80700850 80701048 -78898735 - B3 SINE B2 -13 203 3 2 1200 446 317 55 6 chr3 80702438 80702603 -78897180 + Charlie1a DNA MER1_type 69 241 -1214 2 1200 185 140 0 23 chr3 80703211 80703255 -78896528 + A-rich Low_complexity Low_complexity 5 47 0 2 1200 929 344 74 36 chr3 80703300 80703972 -78895811 + Charlie1a DNA MER1_type 584 1281 -174 2 1200 313 239 134 0 chr3 80703992 80704071 -78895712 - ID4_ SINE ID -56 96 9 2 1200 378 42 0 0 chr3 80705603 80705651 -78894132 + (TAA)n Simple_repeat Simple_repeat 1 48 0 2 1200 25 0 0 0 chr3 80706519 80706544 -78893239 + AT_rich Low_complexity Low_complexity 1 25 0 2 1200 740 161 342 0 chr3 80707636 80707797 -78891986 + B3 SINE B2 1 216 0 2 1200 596 259 0 0 chr3 80708230 80708361 -78891422 - B1_Mur1 SINE Alu -1 148 18 2 1200 264 250 9 111 chr3 80708267 80708375 -78891408 - MT2B LTR ERVL -336 265 169 2 1200 273 336 87 45 chr3 80708689 80708976 -78890807 - L3 LINE CR1 -111 4378 4080 2 1200 715 154 6 23 chr3 80709340 80709513 -78890270 + (TA)n Simple_repeat Simple_repeat 1 170 0 2 1200 771 48 0 0 chr3 80710110 80710214 -78889569 + (CA)n Simple_repeat Simple_repeat 2 105 0 2 1200 8339 115 13 6 chr3 80710286 80712063 -78887720 + Lx3B LINE L1 5179 6968 -5 2 1200 238 115 0 37 chr3 80712462 80712516 -78887267 + A-rich Low_complexity Low_complexity 1 52 0 2 1200 577 84 73 19 chr3 80712945 80713153 -78886630 + (TATATG)n Simple_repeat Simple_repeat 1 219 0 2 1200 374 214 131 0 chr3 80713705 80713789 -78885994 - PB1D10 SINE Alu 0 117 23 2 1200 421 308 19 9 chr3 80713904 80714009 -78885774 - RSINE1 SINE B4 -4 161 56 2 1200 24 0 0 0 chr3 80714116 80714140 -78885643 + AT_rich Low_complexity Low_complexity 1 24 0 2 1200 23 0 0 0 chr3 80717308 80717331 -78882452 + GC_rich Low_complexity Low_complexity 1 23 0 2 1200 270 95 0 0 chr3 80717516 80717558 -78882225 + (CCG)n Simple_repeat Simple_repeat 1 42 0 2 1200 180 0 0 0 chr3 80718790 80718810 -78880973 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 2 1200 26 0 0 0 chr3 80718846 80718872 -78880911 + AT_rich Low_complexity Low_complexity 1 26 0 2 1200 4462 51 45 29 chr3 80718884 80719547 -78880236 - MusHAL1 LINE L1 -10 2702 2029 2 1200 4476 65 24 31 chr3 80719545 80720254 -78879529 - MusHAL1 LINE L1 -1574 1138 435 2 1200 1095 92 0 24 chr3 80720270 80720438 -78879345 + L1Md_F2 LINE L1 6416 6579 -3 2 1200 7474 8 0 0 chr3 80721312 80722182 -78877601 - L1Md_T LINE L1 0 6582 5754 2 1200 220 340 61 27 chr3 80722248 80722396 -78877387 + L2 LINE L2 2259 2411 -1008 2 1200 444 19 0 0 chr3 80722426 80722479 -78877304 + (TG)n Simple_repeat Simple_repeat 2 54 0 2 1200 1192 298 32 24 chr3 80722480 80722855 -78876928 - MTEa LTR MaLR -1 378 1 2 1200 364 366 141 34 chr3 80722881 80723436 -78876347 + L2 LINE L2 2469 3082 -337 2 1200 22 0 0 0 chr3 80723501 80723523 -78876260 + AT_rich Low_complexity Low_complexity 1 22 0 2 1200 5889 133 43 6 chr3 80725063 80726654 -78873129 - Lx LINE L1 -8 6646 4999 2 1200 4489 219 59 42 chr3 80727415 80729569 -78870214 - Lx5 LINE L1 0 7050 4883 2 1200 410 200 76 31 chr3 80729610 80729738 -78870045 + MTEa LTR MaLR 246 379 0 2 1200 741 278 77 56 chr3 80729937 80730261 -78869522 + MLT1A0 LTR MaLR 12 342 -23 2 1200 2717 27 48 3 chr3 80730684 80731015 -78868768 + ORR1A0 LTR MaLR 1 346 0 2 1200 13989 51 7 3 chr3 80731016 80732799 -78866984 + ORR1A0-int LTR MaLR 2 1792 0 2 1200 2933 38 0 0 chr3 80732799 80733145 -78866638 + ORR1A0 LTR MaLR 1 346 0 2 1200 255 146 0 0 chr3 80733284 80733339 -78866444 + (CA)n Simple_repeat Simple_repeat 2 56 0 2 1200 287 152 12 48 chr3 80733368 80733451 -78866332 - Lx2B LINE L1 0 7000 6921 2 1200 5066 169 57 2 chr3 80733450 80734420 -78865363 + Lx2 LINE L1 5786 6808 -189 2 1200 374 194 0 0 chr3 80734511 80734583 -78865200 - RMER1C Other Other -18 1324 1253 2 1200 257 230 14 0 chr3 80734588 80734662 -78865121 + GA-rich Low_complexity Low_complexity 1 75 0 2 1200 1296 79 0 0 chr3 80734672 80734850 -78864933 + (GAA)n Simple_repeat Simple_repeat 1 178 0 2 1200 210 231 0 0 chr3 80735083 80735122 -78864661 + (CTTTG)n Simple_repeat Simple_repeat 4 42 0 2 1200 315 182 15 0 chr3 80735206 80735272 -78864511 - RMER1C Other Other -18 1324 1258 2 1200 477 313 87 16 chr3 80736079 80736264 -78863519 - MLT1A0 LTR MaLR 0 365 168 2 1200 247 266 36 60 chr3 80736299 80736383 -78863400 - MLT1A0 LTR MaLR -258 107 26 2 1200 276 30 0 0 chr3 80737034 80737067 -78862716 + (TAAA)n Simple_repeat Simple_repeat 4 36 0 2 1200 232 271 0 0 chr3 80737567 80737649 -78862134 - MLT1D LTR MaLR -3 502 452 2 1200 2947 260 44 51 chr3 80737705 80738509 -78861274 + Lx7 LINE L1 17 794 -6934 2 1200 1359 226 187 3 chr3 80738509 80738851 -78860932 + MTB_Mm LTR MaLR 1 405 -2 3 1200 2947 259 45 52 chr3 80738851 80739076 -78860707 + Lx7 LINE L1 795 1002 -6726 2 1200 402 79 0 0 chr3 80739076 80739139 -78860644 + (CA)n Simple_repeat Simple_repeat 1 63 0 3 1200 2947 259 45 52 chr3 80739139 80739207 -78860576 + Lx7 LINE L1 1003 1058 -6670 2 1200 1259 238 7 7 chr3 80739206 80739515 -78860268 + Lx7 LINE L1 6106 6414 -1282 2 1200 387 0 0 0 chr3 80739577 80739620 -78860163 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 1200 215 136 32 48 chr3 80739682 80739744 -78860039 + T-rich Low_complexity Low_complexity 1 61 0 3 1200 21 36 0 0 chr3 80739810 80739838 -78859945 + AT_rich Low_complexity Low_complexity 1 28 0 3 1201 490 268 101 6 chr3 80740496 80740654 -78859129 + MTE2b LTR MaLR 207 379 0 3 1201 547 274 151 44 chr3 80740678 80740884 -78858899 + ORR1C2 LTR MaLR 1 228 -156 3 1201 396 0 0 0 chr3 80741003 80741047 -78858736 + (A)n Simple_repeat Simple_repeat 1 44 0 3 1201 4333 182 19 14 chr3 80741059 80741866 -78857917 - RLTR25A LTR ERVK -292 811 1 3 1201 498 320 102 15 chr3 80742073 80742279 -78857504 - B4A SINE B4 -27 265 42 3 1201 7077 65 8 6 chr3 80742303 80743833 -78855950 - L1Md_F2 LINE L1 -1 6581 5049 3 1201 229 311 115 40 chr3 80743980 80744154 -78855629 - ORR1E LTR MaLR -165 194 8 3 1201 22 35 0 0 chr3 80744255 80744284 -78855499 + AT_rich Low_complexity Low_complexity 1 29 0 3 1201 31199 69 2 3 chr3 80745082 80750296 -78849487 + L1Md_F2 LINE L1 285 5589 -297 3 1201 8003 53 3 0 chr3 80750296 80751288 -78848495 + L1Md_F2 LINE L1 5590 6584 -1 3 1201 491 395 65 26 chr3 80752041 80752470 -78847313 + MLT2F LTR ERVL 51 496 -167 3 1201 2896 36 22 0 chr3 80753245 80753601 -78846182 + L1Md_F2 LINE L1 6217 6580 -2 3 1201 5302 75 3 1 chr3 80753611 80754306 -78845477 + L1_Mus2 LINE L1 5871 6566 0 3 1201 2136 214 11 16 chr3 80754376 80754812 -78844971 + RMER15 LTR ERVL 2 435 -140 3 1201 366 272 58 0 chr3 80755201 80755304 -78844479 - ID_B1 SINE B4 0 224 116 3 1201 2004 112 48 13 chr3 80756271 80756587 -78843196 - ORR1A2 LTR MaLR 0 327 1 3 1201 870 63 0 52 chr3 80756653 80756787 -78842996 - L1_Mus1 LINE L1 -1 6566 6440 3 1201 269 350 34 26 chr3 80757197 80757464 -78842319 - ERVL-E-int LTR ERVL -1726 3941 3673 3 1201 926 280 105 30 chr3 80757607 80757979 -78841804 - MTD LTR MaLR -15 404 5 3 1201 2346 182 0 12 chr3 80757981 80758393 -78841390 + MTB_Mm LTR MaLR 1 407 0 3 1201 251 141 169 0 chr3 80758814 80758885 -78840898 + Lx5 LINE L1 6968 7050 0 3 1201 234 307 0 62 chr3 80759545 80759625 -78840158 - RMER6A LTR ERVK -25 731 657 3 1201 411 403 89 17 chr3 80759655 80759892 -78839891 - LTR16A LTR ERVL 0 451 198 3 1201 389 322 73 27 chr3 80760089 80760239 -78839544 - L1M5 LINE L1 -1316 4830 4674 3 1201 706 254 0 0 chr3 80760272 80760410 -78839373 - B1_Mur2 SINE Alu -5 144 7 3 1201 521 294 84 47 chr3 80760573 80760894 -78838889 - L1M5 LINE L1 -1706 4440 4108 3 1201 36 87 0 0 chr3 80760907 80760999 -78838784 + AT_rich Low_complexity Low_complexity 1 92 0 3 1201 339 289 131 47 chr3 80761040 80761394 -78838389 - L1M5 LINE L1 -2143 4003 3617 3 1201 1348 201 195 146 chr3 80761394 80761860 -78837923 + MT2A LTR ERVL 1 491 -42 3 1201 570 54 0 0 chr3 80761860 80761934 -78837849 + (CA)n Simple_repeat Simple_repeat 1 74 0 3 1201 1348 201 195 146 chr3 80761934 80761975 -78837808 + MT2A LTR ERVL 492 532 -1 3 1201 339 289 131 47 chr3 80761975 80762002 -78837781 - L1M5 LINE L1 -2530 3616 3590 3 1201 188 367 81 7 chr3 80762213 80762361 -78837422 - L2a LINE L2 -40 3386 3228 3 1201 281 130 0 0 chr3 80762661 80762707 -78837076 - MamGypLTR3 LTR Gypsy -242 597 552 3 1201 264 365 56 19 chr3 80763316 80763478 -78836305 - L3 LINE CR1 -417 4072 3905 3 1201 2548 66 3 55 chr3 80765251 80765647 -78834136 + L1_Mus2 LINE L1 6215 6566 0 3 1201 306 0 0 0 chr3 80766022 80766056 -78833727 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 3 1201 6900 72 9 4 chr3 80766281 80767195 -78832588 + Lx3_Mus LINE L1 6092 7009 0 3 1201 225 295 32 32 chr3 80767268 80767331 -78832452 + LTR75_1 LTR ERV1 352 414 -132 3 1201 370 297 88 66 chr3 80767417 80767554 -78832229 + RSINE1 SINE B4 14 153 -12 3 1201 516 344 85 24 chr3 80767589 80767917 -78831866 - ORR1E LTR MaLR -5 354 7 3 1201 405 0 0 0 chr3 80768874 80768919 -78830864 + (TA)n Simple_repeat Simple_repeat 2 46 0 3 1201 3997 53 0 4 chr3 80769369 80769863 -78829920 + L1Md_F2 LINE L1 6079 6570 -12 3 1201 414 0 0 0 chr3 80770443 80770489 -78829294 + (CA)n Simple_repeat Simple_repeat 1 46 0 3 1201 360 360 73 22 chr3 80771452 80771725 -78828058 - MER63B DNA AcHobo -9 427 141 3 1201 322 353 62 44 chr3 80771806 80771966 -78827817 - B4A SINE B4 -104 188 26 3 1201 318 278 30 38 chr3 80771965 80772096 -78827687 - MER63B DNA AcHobo -304 132 3 3 1201 3128 220 77 27 chr3 80772628 80773449 -78826334 - Lx7 LINE L1 -2 7694 6833 3 1201 971 273 40 16 chr3 80773440 80773819 -78825964 - L1_Mur3 LINE L1 -6923 789 402 3 1201 822 64 0 0 chr3 80773876 80773985 -78825798 + (TAGA)n Simple_repeat Simple_repeat 4 112 0 3 1201 547 218 8 8 chr3 80774290 80774415 -78825368 - BC1_Mm scRNA scRNA -20 132 8 3 1201 540 302 134 12 chr3 80774652 80774823 -78824960 + B3A SINE B2 6 197 -1 3 1201 261 0 0 0 chr3 80777015 80777044 -78822739 + (TG)n Simple_repeat Simple_repeat 2 30 0 3 1201 25 95 0 0 chr3 80777513 80777587 -78822196 + AT_rich Low_complexity Low_complexity 1 74 0 3 1201 279 368 0 0 chr3 80778051 80778127 -78821656 - PB1D10 SINE Alu -32 85 10 3 1201 1798 149 21 60 chr3 80779269 80779605 -78820178 - ORR1A4 LTR MaLR 0 329 7 3 1201 206 297 0 0 chr3 80780009 80780083 -78819700 + T-rich Low_complexity Low_complexity 1 74 0 3 1201 375 327 47 0 chr3 80780311 80780418 -78819365 + B1F SINE Alu 1 112 -37 3 1201 289 314 107 8 chr3 80780418 80780433 -78819350 + ID_B1 SINE B4 82 215 -9 3 1201 290 248 159 71 chr3 80780502 80780615 -78819168 - PB1 SINE Alu -4 123 1 3 1201 949 301 63 17 chr3 80782960 80783481 -78816302 + L1MC2 LINE L1 5458 6002 -342 3 1201 9106 177 39 10 chr3 80783612 80785597 -78814186 - L1VL4 LINE L1 -2207 3679 1637 3 1201 6185 119 4 6 chr3 80785612 80786575 -78813208 - Lx LINE L1 -3 6651 5691 3 1201 2415 189 5 7 chr3 80786563 80787384 -78812399 - L1VL4 LINE L1 -2268 1646 836 3 1201 1698 240 61 2 chr3 80787855 80788265 -78811518 - Lx6 LINE L1 -169 7291 6858 3 1201 262 160 0 0 chr3 80788286 80788336 -78811447 + L1MC2 LINE L1 6115 6164 -180 3 1201 333 0 0 0 chr3 80789332 80789369 -78810414 + (TG)n Simple_repeat Simple_repeat 2 38 0 3 1201 337 298 0 41 chr3 80789657 80789755 -78810028 + PB1D10 SINE Alu 3 96 -21 3 1201 377 55 36 0 chr3 80790121 80790176 -78809607 + (GAAA)n Simple_repeat Simple_repeat 2 58 0 3 1201 11849 29 0 0 chr3 80790267 80792383 -78807400 - L1Md_T LINE L1 0 6582 4466 3 1201 262 359 9 19 chr3 80793269 80793374 -78806409 + MTEb LTR MaLR 38 141 -218 3 1201 225 0 0 0 chr3 80793388 80793413 -78806370 + (TTG)n Simple_repeat Simple_repeat 3 27 0 3 1201 766 328 82 26 chr3 80793426 80793730 -78806053 - ORR1E LTR MaLR -38 321 1 3 1201 294 312 84 36 chr3 80793762 80793928 -78805855 + MTEb LTR MaLR 204 377 -2 3 1201 225 65 0 0 chr3 80794507 80794538 -78805245 + (CA)n Simple_repeat Simple_repeat 2 32 0 3 1201 21 36 0 0 chr3 80795013 80795041 -78804742 + AT_rich Low_complexity Low_complexity 1 28 0 3 1201 215 188 15 45 chr3 80795127 80795194 -78804589 + A-rich Low_complexity Low_complexity 4 68 0 3 1201 2874 89 19 22 chr3 80795796 80796208 -78803575 - RLTR9F LTR ERVK -4 411 1 3 1201 53 63 0 0 chr3 80796598 80796693 -78803090 + AT_rich Low_complexity Low_complexity 1 95 0 3 1201 569 259 4 42 chr3 80796694 80796932 -78802851 - Lx7 LINE L1 -25 7671 7443 3 1201 27607 110 43 44 chr3 80796945 80799477 -78800306 + Lx3A LINE L1 208 2875 -3011 3 1201 387 0 0 0 chr3 80799477 80799520 -78800263 + (GAAA)n Simple_repeat Simple_repeat 2 44 0 3 1201 27607 92 19 65 chr3 80799520 80799828 -78799955 + Lx3A LINE L1 2876 3029 -2857 3 1201 1110 115 0 0 chr3 80799828 80799976 -78799807 - B1_Mus1 SINE Alu 0 148 1 3 1201 27607 92 19 65 chr3 80799976 80801813 -78797970 + Lx3A LINE L1 3030 4735 -1151 3 1201 261 0 0 0 chr3 80801813 80801842 -78797941 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 3 1201 27607 99 24 40 chr3 80801842 80804070 -78795713 + Lx3A LINE L1 4736 6975 -6 3 1201 2309 224 38 124 chr3 80804061 80804908 -78794875 - Lx7 LINE L1 -153 7543 6770 3 1201 21 0 0 0 chr3 80805521 80805542 -78794241 + AT_rich Low_complexity Low_complexity 1 21 0 3 1201 288 120 0 0 chr3 80806054 80806104 -78793679 + (A)n Simple_repeat Simple_repeat 1 50 0 3 1201 228 35 0 0 chr3 80806369 80806398 -78793385 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 3 1201 4593 229 24 16 chr3 80806636 80807977 -78791806 - Lx7 LINE L1 -918 6778 5435 3 1201 2691 137 32 9 chr3 80807974 80808854 -78790929 - L1Md_F LINE L1 -4357 1526 589 3 1201 4421 97 5 19 chr3 80809085 80809726 -78790057 - Lx3A LINE L1 -1 6980 6349 3 1201 3084 92 14 35 chr3 80809726 80810243 -78789540 + Lx3A LINE L1 5835 6340 -641 3 1201 540 319 152 15 chr3 80811411 80811873 -78787910 + Arthur1 DNA Tip100 3274 3798 -149 3 1201 25 31 0 0 chr3 80812668 80812700 -78787083 + AT_rich Low_complexity Low_complexity 1 32 0 3 1201 522 0 0 0 chr3 80814977 80815035 -78784748 + (TC)n Simple_repeat Simple_repeat 2 59 0 3 1201 279 0 0 0 chr3 80815035 80815065 -78784718 + (TG)n Simple_repeat Simple_repeat 2 32 0 3 1201 4351 226 55 15 chr3 80815192 80816261 -78783522 - Lx5 LINE L1 -73 6977 5866 3 1201 1688 291 108 12 chr3 80816827 80817132 -78782651 - RCHARR1 DNA MER1_type -303 671 348 3 1201 666 0 0 0 chr3 80817132 80817206 -78782577 + (GA)n Simple_repeat Simple_repeat 1 74 0 3 1201 1688 291 108 12 chr3 80817206 80817491 -78782292 - RCHARR1 DNA MER1_type -627 347 25 3 1201 3800 165 45 12 chr3 80817558 80818225 -78781558 - RLTR17 LTR ERVK -3 689 1 3 1201 26 30 0 0 chr3 80818438 80818471 -78781312 + AT_rich Low_complexity Low_complexity 1 33 0 3 1201 769 309 34 37 chr3 80818491 80818787 -78780996 - RMER5 LTR ERV1 -9 525 231 3 1201 539 291 126 12 chr3 80818930 80819097 -78780686 - B3A SINE B2 -7 191 6 3 1201 219 245 0 0 chr3 80819164 80819217 -78780566 + (TTG)n Simple_repeat Simple_repeat 2 54 0 3 1201 470 323 81 0 chr3 80819732 80819893 -78779890 - ORR1D2 LTR MaLR -196 174 1 3 1201 4095 63 57 7 chr3 80819988 80820551 -78779232 - L1Md_F2 LINE L1 -1 6581 5991 3 1201 462 307 116 28 chr3 80821037 80821324 -78778459 - RMER20B LTR ERVK -12 504 182 4 1201 230 215 0 12 chr3 80822092 80822172 -78777611 + GA-rich Low_complexity Low_complexity 1 79 0 4 1201 824 331 60 38 chr3 80823149 80823519 -78776264 - MTEa LTR MaLR 0 379 2 4 1201 249 316 63 0 chr3 80824407 80824486 -78775297 - ID_B1 SINE B4 -81 143 60 4 1201 998 317 10 14 chr3 80825093 80825384 -78774399 - MTD LTR MaLR -129 290 1 4 1201 3427 174 176 68 chr3 80825788 80826160 -78773623 + RLTR25B LTR ERVK 1 372 -731 4 1201 198 0 0 0 chr3 80826160 80826182 -78773601 + (TTTTG)n Simple_repeat Simple_repeat 3 24 0 4 1201 1116 89 0 0 chr3 80826183 80826329 -78773454 - B1_Mus1 SINE Alu -1 147 2 4 1201 3427 176 52 80 chr3 80826329 80826754 -78773029 + RLTR25B LTR ERVK 370 808 -220 4 1201 381 22 0 0 chr3 80826754 80826800 -78772983 + (CA)n Simple_repeat Simple_repeat 1 46 0 4 1201 3427 174 176 68 chr3 80826800 80826898 -78772885 + RLTR25B LTR ERVK 809 996 -107 4 1201 256 295 96 96 chr3 80826942 80827077 -78772706 + B4A SINE B4 3 137 -155 4 1201 297 0 0 0 chr3 80828075 80828108 -78771675 + (CA)n Simple_repeat Simple_repeat 2 34 0 4 1201 26 30 0 0 chr3 80828140 80828173 -78771610 + AT_rich Low_complexity Low_complexity 1 33 0 4 1201 238 213 0 16 chr3 80828605 80828667 -78771116 + (TTTG)n Simple_repeat Simple_repeat 1 61 0 4 1201 188 212 15 0 chr3 80830657 80830723 -78769060 + (TA)n Simple_repeat Simple_repeat 1 67 0 4 1201 1134 82 0 0 chr3 80831804 80831950 -78767833 + B1_Mm SINE Alu 2 147 0 4 1201 867 307 66 38 chr3 80832490 80832552 -78767231 + L1MA7 LINE L1 5414 5474 -817 4 1201 297 0 0 0 chr3 80832552 80832585 -78767198 + (TG)n Simple_repeat Simple_repeat 1 33 0 4 1201 333 0 0 0 chr3 80832585 80832621 -78767162 + (GA)n Simple_repeat Simple_repeat 1 37 0 4 1201 1167 306 66 38 chr3 80832621 80833318 -78766465 + L1MA7 LINE L1 5475 6194 -97 4 1201 691 50 30 0 chr3 80833645 80833744 -78766039 + (TTTTC)n Simple_repeat Simple_repeat 3 104 0 4 1201 342 0 0 0 chr3 80833844 80833882 -78765901 + (CA)n Simple_repeat Simple_repeat 2 39 0 4 1201 899 195 0 7 chr3 80834849 80834999 -78764784 + B1_Mur2 SINE Alu 1 149 0 4 1201 239 297 65 21 chr3 80835264 80835357 -78764426 - RMER5 LTR ERV1 -17 517 421 4 1201 602 163 21 7 chr3 80835609 80835751 -78764032 + (TA)n Simple_repeat Simple_repeat 2 145 0 4 1201 21 0 0 0 chr3 80836344 80836365 -78763418 + AT_rich Low_complexity Low_complexity 1 21 0 4 1201 320 0 25 0 chr3 80837294 80837334 -78762449 + (TTA)n Simple_repeat Simple_repeat 3 43 0 4 1201 372 97 0 0 chr3 80837667 80837729 -78762054 + (TG)n Simple_repeat Simple_repeat 2 63 0 4 1201 552 30 0 0 chr3 80837885 80837951 -78761832 + (TCTA)n Simple_repeat Simple_repeat 4 69 0 4 1201 717 45 0 0 chr3 80838093 80838182 -78761601 + (GA)n Simple_repeat Simple_repeat 2 90 0 4 1201 218 264 70 70 chr3 80838684 80838798 -78760985 - MIRm SINE MIR 0 276 163 4 1201 232 177 38 12 chr3 80840448 80840528 -78759255 + (CCCG)n Simple_repeat Simple_repeat 4 85 0 4 1201 351 65 0 0 chr3 80842608 80842654 -78757129 + (TA)n Simple_repeat Simple_repeat 2 47 0 4 1201 284 64 0 21 chr3 80844582 80844630 -78755153 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 4 1201 356 344 57 13 chr3 80844942 80845101 -78754682 - Tigger15a DNA TcMar -521 194 29 4 1201 195 162 0 0 chr3 80846409 80846446 -78753337 + T-rich Low_complexity Low_complexity 2 38 0 4 1201 21 0 0 0 chr3 80847165 80847186 -78752597 + AT_rich Low_complexity Low_complexity 1 21 0 4 1201 549 0 0 0 chr3 80847558 80847619 -78752164 + (TTTTG)n Simple_repeat Simple_repeat 2 62 0 4 1201 205 271 34 0 chr3 80848246 80848305 -78751478 - MIRm SINE MIR -3 273 213 4 1201 427 239 27 27 chr3 80848367 80848479 -78751304 - B1F SINE Alu -8 141 30 4 1201 24 53 0 0 chr3 80849280 80849318 -78750465 + AT_rich Low_complexity Low_complexity 1 38 0 4 1201 322 222 0 0 chr3 80849964 80850027 -78749756 - B1_Mur4 SINE Alu -11 139 77 4 1201 362 326 51 23 chr3 80852466 80852642 -78747141 - HAL1-3A_ME LINE L1 -394 2464 2284 4 1201 463 197 8 17 chr3 80852644 80852763 -78747020 + CT-rich Low_complexity Low_complexity 2 119 0 4 1201 398 272 44 0 chr3 80853410 80853524 -78746259 + PB1D7 SINE Alu 2 120 0 4 1201 298 319 41 41 chr3 80854406 80854504 -78745279 - RSINE1 SINE B4 -8 157 60 4 1201 376 227 0 26 chr3 80854510 80854587 -78745196 + B1F1 SINE Alu 9 83 -66 4 1201 278 312 37 37 chr3 80854923 80855086 -78744697 - L1MA9 LINE L1 -1 6311 6149 4 1201 211 104 20 20 chr3 80857202 80857251 -78742532 + (TGGGGG)n Simple_repeat Simple_repeat 3 51 0 4 1201 2230 42 4 0 chr3 80858312 80858577 -78741206 - L1_Mus1 LINE L1 -646 5921 5656 4 1201 5515 48 5 6 chr3 80858577 80859222 -78740561 + L1_Mus1 LINE L1 5924 6567 0 4 1201 3498 50 0 0 chr3 80859520 80859919 -78739864 - L1_Mus1 LINE L1 0 6567 6169 4 1201 779 86 0 0 chr3 80859919 80860024 -78739759 + L1_Mus1 LINE L1 6066 6170 -397 4 1201 297 0 0 0 chr3 80860213 80860246 -78739537 + (TG)n Simple_repeat Simple_repeat 2 34 0 4 1201 226 213 31 47 chr3 80860262 80860326 -78739457 - B4 SINE B4 -36 256 194 4 1201 23 33 0 0 chr3 80860508 80860538 -78739245 + AT_rich Low_complexity Low_complexity 1 30 0 4 1201 562 309 86 40 chr3 80860637 80860961 -78738822 - MER34A LTR ERV1 -3 568 230 4 1201 1548 219 77 29 chr3 80860975 80861393 -78738390 - RMER10A LTR ERVL 0 442 5 4 1201 283 315 126 37 chr3 80861765 80861956 -78737827 - MT2A LTR ERVL -4 529 322 4 1201 270 0 0 0 chr3 80862857 80862887 -78736896 + (TG)n Simple_repeat Simple_repeat 1 30 0 4 1201 180 238 0 0 chr3 80862916 80862979 -78736804 + (TG)n Simple_repeat Simple_repeat 1 63 0 4 1201 433 213 8 16 chr3 80863297 80863421 -78736362 + GA-rich Low_complexity Low_complexity 2 124 0 4 1201 304 171 13 26 chr3 80864273 80864351 -78735432 + CT-rich Low_complexity Low_complexity 4 80 0 4 1201 195 69 0 0 chr3 80864854 80864883 -78734900 + (TTTTTG)n Simple_repeat Simple_repeat 3 31 0 4 1201 199 104 20 20 chr3 80865575 80865624 -78734159 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 4 1201 330 291 86 79 chr3 80866001 80866362 -78733421 + ORR1E LTR MaLR 12 360 -10 4 1201 228 169 26 13 chr3 80866420 80866498 -78733285 + (CATATA)n Simple_repeat Simple_repeat 4 82 0 4 1201 280 300 146 29 chr3 80866711 80866917 -78732866 + AmnSINE1 SINE SINE 190 419 -156 4 1201 264 30 0 0 chr3 80867025 80867058 -78732725 + (ATTG)n Simple_repeat Simple_repeat 4 36 0 4 1201 1249 75 0 0 chr3 80867220 80867367 -78732416 + B1_Mus2 SINE Alu 1 147 0 4 1201 397 17 67 0 chr3 80867371 80867431 -78732352 + (CAAAA)n Simple_repeat Simple_repeat 2 65 0 4 1201 182 312 194 26 chr3 80867476 80867703 -78732080 - L2a LINE L2 -67 3359 3095 4 1201 2902 69 0 3 chr3 80868353 80868700 -78731083 - ORR1A1 LTR MaLR 0 346 1 4 1201 188 214 108 54 chr3 80869179 80869253 -78730530 + MIRm SINE MIR 108 185 -91 4 1201 438 345 50 7 chr3 80869479 80869619 -78730164 + RSINE1 SINE B4 16 161 -4 4 1201 1093 181 50 0 chr3 80870101 80870300 -78729483 - ORR1C2 LTR MaLR -2 382 174 4 1201 697 107 16 0 chr3 80870318 80870440 -78729343 + (GA)n Simple_repeat Simple_repeat 2 125 0 4 1201 1078 158 0 22 chr3 80870452 80870633 -78729150 - ORR1C2 LTR MaLR -202 182 6 4 1201 826 262 87 29 chr3 80870617 80870927 -78728856 - RCHARR1 DNA MER1_type -47 927 600 4 1201 545 265 179 21 chr3 80870936 80871171 -78728612 + B4A SINE B4 5 276 -16 4 150 1468 271 88 37 chr3 80871293 80871806 -78727977 - RCHARR1 DNA MER1_type -369 605 67 4 1202 522 0 0 0 chr3 80872442 80872500 -78727283 + (TC)n Simple_repeat Simple_repeat 2 59 0 4 1202 378 0 0 0 chr3 80872500 80872541 -78727242 + (TG)n Simple_repeat Simple_repeat 1 42 0 4 1202 672 13 0 0 chr3 80873055 80873132 -78726651 + (TTCC)n Simple_repeat Simple_repeat 2 78 0 4 1202 467 33 16 0 chr3 80873385 80873446 -78726337 + (TG)n Simple_repeat Simple_repeat 1 62 0 4 1202 571 292 15 0 chr3 80873451 80873588 -78726195 - RSINE1 SINE B4 -24 141 3 4 1202 222 37 0 0 chr3 80874138 80874165 -78725618 + (T)n Simple_repeat Simple_repeat 1 27 0 4 1202 7655 5 0 0 chr3 80874368 80875168 -78724615 - L1Md_A LINE L1 0 6582 5783 4 1202 42060 6 0 0 chr3 80875168 80881535 -78718248 - L1Md_T LINE L1 -1 6581 215 4 1202 1256 113 0 36 chr3 80882408 80882600 -78717183 - B2_Mm2 SINE B2 -9 186 2 4 1202 462 312 94 84 chr3 80883933 80884360 -78715423 + MER82 DNA MER2_type 214 644 -9 4 1202 399 323 15 22 chr3 80885133 80885269 -78714514 + ID_B1 SINE B4 90 224 0 4 1202 589 280 91 50 chr3 80885269 80885468 -78714315 + B3 SINE B2 3 209 -7 4 1202 810 246 37 16 chr3 80885487 80885677 -78714106 + B3A SINE B2 5 198 0 4 1202 742 357 26 22 chr3 80888554 80888826 -78710957 + B4A SINE B4 8 280 -12 4 1202 426 53 0 0 chr3 80888917 80888974 -78710809 + (GAAA)n Simple_repeat Simple_repeat 3 59 0 4 1202 258 32 0 0 chr3 80889641 80889672 -78710111 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 4 1202 360 0 0 0 chr3 80890363 80890403 -78709380 + (TG)n Simple_repeat Simple_repeat 2 41 0 4 1202 210 118 0 0 chr3 80891540 80891574 -78708209 + (TA)n Simple_repeat Simple_repeat 2 35 0 4 1202 250 324 64 45 chr3 80891583 80891693 -78708090 - RMER12 LTR ERVK -474 848 737 4 1202 592 146 57 0 chr3 80891702 80891825 -78707958 + L1Md_F2 LINE L1 6452 6581 -1 4 1202 32 26 0 0 chr3 80892429 80892468 -78707315 + AT_rich Low_complexity Low_complexity 1 39 0 4 1202 1350 208 37 34 chr3 80892475 80892799 -78706984 - Lx7 LINE L1 -16 7680 7356 4 1202 378 61 0 0 chr3 80892807 80892856 -78706927 + (CA)n Simple_repeat Simple_repeat 2 50 0 4 1202 1568 208 24 3 chr3 80892857 80893194 -78706589 - Lx7 LINE L1 -506 7190 6847 4 1202 741 191 67 36 chr3 80893184 80893379 -78706404 - L1_Mur3 LINE L1 -1057 4823 4623 4 1202 1193 62 0 0 chr3 80893935 80894081 -78705702 - B1_Mus2 SINE Alu -1 146 1 4 1202 245 203 51 63 chr3 80894458 80894537 -78705246 + MTEa LTR MaLR 281 358 -21 4 1202 830 270 134 20 chr3 80895548 80895794 -78703989 + ORR1D2 LTR MaLR 1 274 -96 5 1202 25 0 0 0 chr3 80895808 80895833 -78703950 + AT_rich Low_complexity Low_complexity 1 25 0 5 1202 245 128 40 60 chr3 80895891 80895941 -78703842 + ORR1D2 LTR MaLR 321 369 -1 5 1202 231 180 20 20 chr3 80897044 80897095 -78702688 + L1MB8 LINE L1 6093 6143 -35 5 1202 21 0 0 0 chr3 80897296 80897317 -78702466 + AT_rich Low_complexity Low_complexity 1 21 0 5 1202 453 32 0 0 chr3 80897378 80897440 -78702343 - L1Md_T LINE L1 0 6582 6521 5 1202 22 35 0 0 chr3 80897588 80897617 -78702166 + AT_rich Low_complexity Low_complexity 1 29 0 5 1202 317 322 0 25 chr3 80898628 80898746 -78701037 - MLT2B2 LTR ERVL -381 134 20 5 1202 590 297 27 53 chr3 80899236 80899574 -78700209 - RLTR15 LTR ERVK -3 356 28 5 1202 21 36 0 0 chr3 80899599 80899627 -78700156 + AT_rich Low_complexity Low_complexity 1 28 0 5 1202 233 260 63 25 chr3 80899984 80900063 -78699720 + L1MC3 LINE L1 7042 7123 -662 5 1202 297 0 0 0 chr3 80900344 80900377 -78699406 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 5 1202 393 303 42 5 chr3 80900443 80900632 -78699151 + L1MC3 LINE L1 7546 7741 -44 5 1202 236 391 63 24 chr3 80901892 80902099 -78697684 + MIRb SINE MIR 25 239 -29 5 1202 265 222 41 148 chr3 80902781 80902950 -78696833 + RLTR25B LTR ERVK 371 521 -507 5 1202 890 60 0 0 chr3 80902850 80902966 -78696817 + B1_Mus2 SINE Alu 26 141 -6 5 1202 447 19 0 0 chr3 80902968 80903020 -78696763 + (CCAA)n Simple_repeat Simple_repeat 3 54 0 5 1202 399 296 0 9 chr3 80903287 80903396 -78696387 + RSINE1 SINE B4 3 110 -55 5 1202 235 318 179 34 chr3 80905014 80905193 -78694590 - MLT1A0 LTR MaLR -52 313 109 5 1202 275 379 43 0 chr3 80905330 80905446 -78694337 - B1F SINE Alu -18 131 11 5 1202 348 275 63 78 chr3 80905474 80905616 -78694167 - B1F SINE Alu -6 143 4 5 1202 553 137 95 0 chr3 80905794 80905889 -78693894 + B1_Mus2 SINE Alu 34 137 -10 5 1202 231 88 0 0 chr3 80905890 80905924 -78693859 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 5 1202 450 149 0 0 chr3 80907407 80907494 -78692289 + (TATG)n Simple_repeat Simple_repeat 2 88 0 5 1202 307 332 97 39 chr3 80907498 80907705 -78692078 - B4A SINE B4 -69 223 5 5 1202 576 234 9 0 chr3 80907847 80907958 -78691825 + RSINE1 SINE B4 8 119 -46 5 1202 1034 228 119 17 chr3 80907999 80908067 -78691716 + Lx9 LINE L1 7247 7315 -329 5 1202 330 26 0 0 chr3 80908067 80908106 -78691677 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 5 1202 1034 228 119 17 chr3 80908106 80908398 -78691385 + Lx9 LINE L1 7316 7643 -1 5 1202 819 126 56 19 chr3 80908873 80909035 -78690748 + L1_Mus3 LINE L1 6466 6633 -5 5 1202 486 75 0 0 chr3 80909414 80909481 -78690302 + (TG)n Simple_repeat Simple_repeat 1 67 0 5 1202 441 0 0 0 chr3 80909481 80909529 -78690254 + (GA)n Simple_repeat Simple_repeat 1 49 0 5 1202 670 211 44 29 chr3 80911020 80911157 -78688626 - B1_Mus2 SINE Alu -8 139 1 5 1202 206 217 0 14 chr3 80912367 80912437 -78687346 + (TATATG)n Simple_repeat Simple_repeat 3 71 0 5 1202 388 193 52 0 chr3 80913333 80913468 -78686315 + Lx9 LINE L1 7495 7636 -8 5 1202 1329 282 30 43 chr3 80916417 80916788 -78682995 - ORR1D2 LTR MaLR -4 366 1 5 1202 261 317 0 0 chr3 80916961 80917043 -78682740 - B4A SINE B4 -209 83 2 5 1202 385 301 30 16 chr3 80918758 80918881 -78680902 - PB1D10 SINE Alu -27 122 2 5 1202 959 303 89 19 chr3 80919039 80919355 -78680428 - MTEb LTR MaLR -14 365 28 5 1202 250 194 0 3 chr3 80919597 80919642 -78680141 - PB1D7 SINE Alu -86 63 20 5 1202 1160 96 37 11 chr3 80919912 80919941 -78679842 - B2_Mm2 SINE B2 0 195 160 5 1202 288 70 0 0 chr3 80919941 80919984 -78679799 + (TTTA)n Simple_repeat Simple_repeat 3 45 0 5 1202 1160 96 37 11 chr3 80919984 80920143 -78679640 - B2_Mm2 SINE B2 -36 159 2 5 1202 23 0 0 0 chr3 80920851 80920874 -78678909 + AT_rich Low_complexity Low_complexity 1 23 0 5 1202 231 287 0 90 chr3 80921028 80921042 -78678741 + L1Md_F2 LINE L1 5957 5969 -1028 5 1202 936 88 0 39 chr3 80921042 80921196 -78678587 - L1Md_F2 LINE L1 0 6582 6435 5 1202 3404 72 22 9 chr3 80921196 80921651 -78678132 + L1Md_F2 LINE L1 5970 6435 -147 5 1202 22 0 0 0 chr3 80921735 80921757 -78678026 + AT_rich Low_complexity Low_complexity 1 22 0 5 1202 195 261 0 0 chr3 80922219 80922288 -78677495 + (TG)n Simple_repeat Simple_repeat 2 70 0 5 1202 676 274 190 21 chr3 80922297 80922539 -78677244 - B4A SINE B4 -8 284 2 5 1202 184 209 0 23 chr3 80922622 80922666 -78677117 + MIRm SINE MIR 116 158 -118 5 1202 1094 118 0 11 chr3 80923746 80923926 -78675857 + (TTCC)n Simple_repeat Simple_repeat 3 180 0 5 1202 207 0 0 0 chr3 80923926 80923949 -78675834 + (TTTC)n Simple_repeat Simple_repeat 4 26 0 5 1202 192 163 0 0 chr3 80925001 80925044 -78674739 + CT-rich Low_complexity Low_complexity 3 45 0 5 1202 418 360 43 39 chr3 80925301 80925509 -78674274 - B3A SINE B2 0 216 8 5 1202 198 0 0 0 chr3 80925560 80925582 -78674201 + (CA)n Simple_repeat Simple_repeat 1 22 0 5 1202 279 108 0 0 chr3 80925824 80925861 -78673922 + U2 snRNA snRNA 1 37 -151 5 1202 342 0 0 0 chr3 80926577 80926615 -78673168 + (TG)n Simple_repeat Simple_repeat 1 38 0 5 1202 27 49 0 0 chr3 80926853 80926894 -78672889 + AT_rich Low_complexity Low_complexity 1 41 0 5 1202 25 0 0 0 chr3 80927255 80927280 -78672503 + AT_rich Low_complexity Low_complexity 1 25 0 5 1202 444 174 0 0 chr3 80930110 80930202 -78669581 + (TA)n Simple_repeat Simple_repeat 2 93 0 5 1202 370 361 6 12 chr3 80930204 80930364 -78669419 - RSINE1 SINE B4 -2 163 5 5 1202 622 306 77 0 chr3 80931474 80931657 -78668126 - B3 SINE B2 -19 197 1 5 1202 680 231 172 41 chr3 80931707 80932171 -78667612 - Lx7 LINE L1 -4 7692 7168 5 1202 21 0 0 0 chr3 80932424 80932445 -78667338 + AT_rich Low_complexity Low_complexity 1 21 0 5 1202 526 367 40 29 chr3 80933238 80933510 -78666273 + B4A SINE B4 9 283 -9 5 1202 21 36 0 0 chr3 80933557 80933585 -78666198 + AT_rich Low_complexity Low_complexity 1 28 0 5 1202 423 0 0 0 chr3 80935485 80935532 -78664251 + (TC)n Simple_repeat Simple_repeat 2 48 0 5 1202 249 33 0 0 chr3 80935532 80935561 -78664222 + (TG)n Simple_repeat Simple_repeat 1 30 0 5 1202 480 179 20 0 chr3 80935561 80935712 -78664071 + GA-rich Low_complexity Low_complexity 2 155 0 5 1202 22 0 0 0 chr3 80936845 80936867 -78662916 + AT_rich Low_complexity Low_complexity 1 22 0 5 1202 31 0 0 0 chr3 80937595 80937626 -78662157 + AT_rich Low_complexity Low_complexity 1 31 0 5 1202 315 0 0 0 chr3 80937940 80937975 -78661808 + (TG)n Simple_repeat Simple_repeat 2 36 0 5 1202 34 0 0 0 chr3 80939128 80939162 -78660621 + AT_rich Low_complexity Low_complexity 1 34 0 5 1202 3176 91 39 0 chr3 80939366 80939892 -78659891 - L1_Mus4 LINE L1 -726 5910 5370 5 1202 4800 95 1 10 chr3 80939892 80940592 -78659191 + L1_Mus4 LINE L1 5940 6633 -3 5 1202 303 28 0 0 chr3 80941318 80941354 -78658429 + (TTA)n Simple_repeat Simple_repeat 1 36 0 5 1202 217 106 20 60 chr3 80941741 80941791 -78657992 + A-rich Low_complexity Low_complexity 2 49 0 5 1202 498 196 25 85 chr3 80942752 80942871 -78656912 - B1_Mus2 SINE Alu 0 120 9 5 1202 379 298 0 26 chr3 80942777 80942894 -78656889 - ID_B1 SINE B4 -42 182 69 5 1202 1098 198 32 0 chr3 80943638 80943855 -78655928 - URR1B DNA MER1_type 0 225 2 5 1202 3609 179 30 24 chr3 80943941 80944639 -78655144 - Lx2B LINE L1 -5 6995 6294 5 1202 1018 174 124 0 chr3 80944872 80945073 -78654710 - URR1A DNA MER1_type 0 226 1 5 1202 225 0 0 0 chr3 80945683 80945708 -78654075 + (CA)n Simple_repeat Simple_repeat 1 25 0 5 1202 387 279 219 17 chr3 80945920 80946157 -78653626 + B4A SINE B4 2 286 -6 5 1202 305 187 13 0 chr3 80946179 80946254 -78653529 + (CA)n Simple_repeat Simple_repeat 2 77 0 5 1202 298 109 0 0 chr3 80948150 80948196 -78651587 - MT2A LTR ERVL -1 532 487 5 1202 545 136 40 0 chr3 80948196 80948321 -78651462 + (TAGA)n Simple_repeat Simple_repeat 3 132 0 5 1202 445 304 0 9 chr3 80948323 80948439 -78651344 - MT2A LTR ERVL -71 462 348 5 1202 660 251 45 128 chr3 80948453 80948718 -78651065 - MT2A LTR ERVL -289 244 2 5 1202 262 324 106 19 chr3 80949248 80949352 -78650431 - B1F SINE Alu -26 123 11 5 1202 252 109 109 0 chr3 80949565 80949620 -78650163 - Lx3_Mus LINE L1 -844 6165 6105 5 1202 9605 86 20 6 chr3 80949612 80949806 -78649977 - L1_Mur1 LINE L1 -1052 4834 4636 5 1202 216 0 0 0 chr3 80949806 80949830 -78649953 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 5 1202 9605 86 20 6 chr3 80949830 80951069 -78648714 - L1_Mur1 LINE L1 -1251 4635 3381 5 1202 399 302 127 21 chr3 80951361 80951740 -78648043 - L1MD3 LINE L1 -257 7738 7320 5 1202 2835 93 2 12 chr3 80952249 80952653 -78647130 - MTB LTR MaLR 0 400 1 5 1202 230 308 66 0 chr3 80953153 80953244 -78646539 - MER110A LTR ERV1 0 468 372 5 1202 777 276 51 116 chr3 80953318 80953707 -78646076 - MTE2a LTR MaLR -15 364 1 5 1202 205 317 0 0 chr3 80953943 80954025 -78645758 + (TATATG)n Simple_repeat Simple_repeat 6 87 0 5 1202 342 0 0 0 chr3 80954053 80954091 -78645692 + (CA)n Simple_repeat Simple_repeat 2 39 0 5 1202 4029 179 18 35 chr3 80954091 80954935 -78644848 - Lx4B LINE L1 -12 7046 6218 5 1202 299 113 19 0 chr3 80955048 80955101 -78644682 + (TCTA)n Simple_repeat Simple_repeat 3 56 0 5 1202 317 216 144 72 chr3 80955631 80955756 -78644027 - L2c LINE L2 0 3387 3254 5 1202 633 338 99 10 chr3 80956636 80956859 -78642924 - MLT1A0 LTR MaLR -18 347 95 5 1202 3229 46 5 5 chr3 80956859 80957255 -78642528 - MTA_Mm LTR MaLR 0 396 1 5 1202 633 338 99 10 chr3 80957255 80957345 -78642438 - MLT1A0 LTR MaLR -271 94 7 5 1202 2180 58 14 0 chr3 80957825 80958101 -78641682 - L1_Mus1 LINE L1 0 6567 6288 5 1202 606 51 0 0 chr3 80960124 80960202 -78639581 + (TG)n Simple_repeat Simple_repeat 1 78 0 5 1202 392 311 19 0 chr3 80960206 80960309 -78639474 - RSINE1 SINE B4 -14 151 47 5 1202 257 341 22 0 chr3 80960862 80960953 -78638830 + L1M2 LINE L1 2 94 -6755 5 1202 21 36 0 0 chr3 80961228 80961256 -78638527 + AT_rich Low_complexity Low_complexity 1 28 0 6 1202 2099 146 13 26 chr3 80962389 80962770 -78637013 + ORR1C1 LTR MaLR 1 376 -2 6 1202 29 78 0 0 chr3 80962969 80963033 -78636750 + AT_rich Low_complexity Low_complexity 1 64 0 6 1202 756 281 29 22 chr3 80964435 80964712 -78635071 - L1MA6 LINE L1 -21 6279 6001 6 1202 516 285 20 46 chr3 80964904 80965078 -78634705 + B3A SINE B2 15 173 -20 6 1202 1617 194 88 42 chr3 80966463 80966840 -78632943 - ORR1B1 LTR MaLR 0 394 1 6 1202 21 0 0 0 chr3 80966957 80966978 -78632805 + AT_rich Low_complexity Low_complexity 1 21 0 6 1202 22 0 0 0 chr3 80967587 80967609 -78632174 + AT_rich Low_complexity Low_complexity 1 22 0 6 1202 378 0 0 0 chr3 80968837 80968879 -78630904 + (TAGA)n Simple_repeat Simple_repeat 1 42 0 6 1202 440 125 0 12 chr3 80968885 80968894 -78630889 + (GA)n Simple_repeat Simple_repeat 1 9 0 6 1202 336 24 0 0 chr3 80968894 80968935 -78630848 + (CA)n Simple_repeat Simple_repeat 2 42 0 6 1202 440 125 0 12 chr3 80968935 80969006 -78630777 + (GA)n Simple_repeat Simple_repeat 2 71 0 6 1202 21 0 0 0 chr3 80969083 80969104 -78630679 + AT_rich Low_complexity Low_complexity 1 21 0 6 1202 641 254 70 55 chr3 80969960 80970160 -78629623 - B3 SINE B2 -1 215 13 6 1202 2323 162 81 15 chr3 80971418 80971741 -78628042 - RLTR16 LTR ERVK 0 505 177 6 1202 414 0 0 0 chr3 80971741 80971787 -78627996 + (TC)n Simple_repeat Simple_repeat 1 46 0 6 1202 2323 162 81 15 chr3 80971787 80971932 -78627851 - RLTR16 LTR ERVK -329 176 6 6 1202 440 227 23 78 chr3 80972255 80972384 -78627399 + B4 SINE B4 171 292 0 6 1202 473 98 19 29 chr3 80973088 80973193 -78626590 + (TTTC)n Simple_repeat Simple_repeat 4 107 0 6 1202 23 0 0 0 chr3 80973670 80973693 -78626090 + AT_rich Low_complexity Low_complexity 1 23 0 6 1202 287 324 73 28 chr3 80973790 80973968 -78625815 + MIR SINE MIR 74 259 -3 6 1202 378 241 0 12 chr3 80975131 80975211 -78624572 - ID4 SINE ID -2 81 3 6 1202 315 132 0 0 chr3 80975553 80975621 -78624162 + (A)n Simple_repeat Simple_repeat 1 68 0 6 1202 22 0 0 0 chr3 80978960 80978982 -78620801 + AT_rich Low_complexity Low_complexity 1 22 0 6 1202 24 0 0 0 chr3 80979139 80979163 -78620620 + AT_rich Low_complexity Low_complexity 1 24 0 6 1202 779 253 112 24 chr3 80979187 80979438 -78620345 + B4 SINE B4 8 280 -12 6 1202 24 32 0 0 chr3 80979591 80979622 -78620161 + AT_rich Low_complexity Low_complexity 1 31 0 6 1202 196 111 22 22 chr3 80981246 80981292 -78618491 + (TA)n Simple_repeat Simple_repeat 2 47 0 6 1202 22 0 0 0 chr3 80981352 80981374 -78618409 + AT_rich Low_complexity Low_complexity 1 22 0 6 1202 279 0 0 0 chr3 80981409 80981440 -78618343 + (TTTTA)n Simple_repeat Simple_repeat 2 32 0 6 1202 933 70 78 0 chr3 80981456 80981584 -78618199 - B1_Mus1 SINE Alu -9 139 2 6 1202 630 0 0 0 chr3 80982460 80982530 -78617253 + (TTCC)n Simple_repeat Simple_repeat 4 73 0 6 1202 348 88 0 0 chr3 80982530 80982587 -78617196 + (TC)n Simple_repeat Simple_repeat 1 57 0 6 1202 240 100 0 0 chr3 80983540 80983580 -78616203 + (ATTG)n Simple_repeat Simple_repeat 1 40 0 6 1202 282 29 0 0 chr3 80984331 80984366 -78615417 + (TG)n Simple_repeat Simple_repeat 2 36 0 6 1202 453 355 78 45 chr3 80984422 80984690 -78615093 - B4 SINE B4 -14 278 2 6 1202 26 50 0 0 chr3 80985605 80985645 -78614138 + AT_rich Low_complexity Low_complexity 1 40 0 6 1202 351 0 0 0 chr3 80985780 80985819 -78613964 + (TC)n Simple_repeat Simple_repeat 1 39 0 6 1202 180 0 0 0 chr3 80985819 80985838 -78613945 + (CA)n Simple_repeat Simple_repeat 1 20 0 6 1202 483 257 143 35 chr3 80985959 80986386 -78613397 - L1M2 LINE L1 -2874 3269 2797 6 1202 269 255 72 5 chr3 80986381 80986508 -78613275 - L1_Rod LINE L1 -3111 2736 2595 6 1202 988 298 62 40 chr3 80986505 80987057 -78612726 - L1_Rod LINE L1 -3561 2286 1723 6 1202 511 312 51 40 chr3 80987040 80987390 -78612393 - L1_Mur3 LINE L1 -4283 1597 1244 6 1202 725 217 0 6 chr3 80988007 80988183 -78611600 + (TA)n Simple_repeat Simple_repeat 1 175 0 6 1202 186 43 0 0 chr3 80988494 80988517 -78611266 + (GTTTG)n Simple_repeat Simple_repeat 3 25 0 6 1202 420 176 279 27 chr3 80988518 80988629 -78611154 - B1_Mur3 SINE Alu -1 148 10 6 1202 657 316 41 5 chr3 80989500 80989694 -78610089 + B3 SINE B2 6 206 -10 6 1202 226 355 34 93 chr3 80989715 80989833 -78609950 + B4A SINE B4 64 174 -118 6 1202 267 274 0 101 chr3 80989751 80989852 -78609931 + B1F1 SINE Alu 13 104 -16 6 1202 416 19 19 0 chr3 80989852 80989905 -78609878 + (CA)n Simple_repeat Simple_repeat 2 55 0 6 1202 719 311 48 18 chr3 80990581 80990915 -78608868 - Tigger13a DNA MER2_type -124 647 304 6 1202 199 157 19 19 chr3 80991504 80991556 -78608227 + CT-rich Low_complexity Low_complexity 1 52 0 6 1202 257 340 31 10 chr3 80992321 80992419 -78607364 + PB1D10 SINE Alu 9 108 -9 6 1202 470 61 15 0 chr3 80992483 80992549 -78607234 + (TAGA)n Simple_repeat Simple_repeat 2 68 0 6 1202 369 62 0 0 chr3 80992550 80992598 -78607185 + (GGAA)n Simple_repeat Simple_repeat 1 48 0 6 1202 24 0 0 0 chr3 80992909 80992933 -78606850 + AT_rich Low_complexity Low_complexity 1 24 0 6 1202 225 94 0 0 chr3 80993514 80993546 -78606237 + (CTTTG)n Simple_repeat Simple_repeat 1 32 0 6 1202 1452 44 0 0 chr3 80993550 80993730 -78606053 + (TCTCC)n Simple_repeat Simple_repeat 1 180 0 6 1202 422 79 0 16 chr3 80993730 80993794 -78605989 + (TCCCC)n Simple_repeat Simple_repeat 3 65 0 6 1202 686 121 9 0 chr3 80993790 80993906 -78605877 + (TTTC)n Simple_repeat Simple_repeat 3 119 0 6 1202 235 96 0 37 chr3 80994113 80994167 -78605616 + (TTCA)n Simple_repeat Simple_repeat 3 54 0 6 1202 21 0 0 0 chr3 80994720 80994741 -78605042 + AT_rich Low_complexity Low_complexity 1 21 0 6 1202 366 80 0 0 chr3 80994981 80995031 -78604752 + (CA)n Simple_repeat Simple_repeat 1 50 0 6 1202 377 300 11 0 chr3 80996002 80996092 -78603691 + RSINE1 SINE B4 7 97 -68 6 1202 360 261 30 71 chr3 80996810 80996909 -78602874 - PB1D7 SINE Alu -27 122 28 6 1202 28 29 0 0 chr3 80998093 80998128 -78601655 + AT_rich Low_complexity Low_complexity 1 35 0 6 1202 784 284 57 0 chr3 80999159 80999353 -78600430 - B3 SINE B2 -5 211 7 6 1202 206 0 0 65 chr3 81000017 81000033 -78599750 + (TTG)n Simple_repeat Simple_repeat 1 15 0 1 1202 207 69 0 0 chr3 81000033 81000062 -78599721 + (ATG)n Simple_repeat Simple_repeat 1 29 0 2 1202 206 0 0 65 chr3 81000062 81000076 -78599707 + (TTG)n Simple_repeat Simple_repeat 2 15 0 3 1202 225 287 159 11 chr3 81000842 81000930 -78598853 - PB1D10 SINE Alu -2 115 15 4 1202 351 44 0 0 chr3 81001126 81001171 -78598612 + (TG)n Simple_repeat Simple_repeat 2 46 0 5 1202 192 231 0 0 chr3 81002034 81002086 -78597697 + (TTTA)n Simple_repeat Simple_repeat 3 54 0 6 1202 435 307 12 50 chr3 81002086 81002247 -78597536 - RSINE1 SINE B4 -2 163 9 7 1203 324 0 0 0 chr3 81003091 81003127 -78596656 + (TA)n Simple_repeat Simple_repeat 2 37 0 8 1203 3704 87 25 6 chr3 81003356 81003876 -78595907 - L1_Mus1 LINE L1 -1 6566 6037 9 1203 472 319 62 13 chr3 81003935 81004136 -78595647 + B4 SINE B4 16 276 -16 1 1203 186 272 58 69 chr3 81004689 81004776 -78595007 - L2 LINE L2 -490 2929 2844 1 1203 22 0 0 0 chr3 81005987 81006009 -78593774 + AT_rich Low_complexity Low_complexity 1 22 0 1 1203 550 260 33 27 chr3 81006032 81006182 -78593601 - B3A SINE B2 -10 188 38 1 1203 620 26 0 13 chr3 81006182 81006261 -78593522 + (TA)n Simple_repeat Simple_repeat 1 78 0 1 1203 708 54 0 0 chr3 81006353 81006446 -78593337 + (TAGA)n Simple_repeat Simple_repeat 1 93 0 1 1203 1068 297 57 31 chr3 81006449 81006873 -78592910 - Lx8 LINE L1 -146 7327 6893 1 1203 903 298 157 4 chr3 81006892 81007344 -78592439 - Lx8 LINE L1 -637 6836 6316 1 1203 29 47 0 0 chr3 81007437 81007480 -78592303 + AT_rich Low_complexity Low_complexity 1 43 0 1 1203 349 333 9 43 chr3 81007894 81008010 -78591773 - PB1D10 SINE Alu -5 112 1 1 1203 21 0 0 0 chr3 81010633 81010654 -78589129 + AT_rich Low_complexity Low_complexity 1 21 0 1 1203 532 121 0 20 chr3 81011884 81011985 -78587798 + L1Md_F2 LINE L1 6483 6581 -1 2 1203 288 0 0 0 chr3 81014267 81014299 -78585484 + (TC)n Simple_repeat Simple_repeat 1 32 0 2 1203 281 270 121 45 chr3 81015132 81015264 -78584519 + MIRb SINE MIR 119 260 -8 2 1203 485 274 0 33 chr3 81020305 81020426 -78579357 + RSINE1 SINE B4 5 121 -44 2 1203 549 0 0 0 chr3 81020443 81020504 -78579279 + (TCCC)n Simple_repeat Simple_repeat 4 64 0 2 1203 680 318 112 11 chr3 81020799 81021595 -78578188 + L1MB7 LINE L1 4606 5481 -699 2 1203 348 328 76 43 chr3 81021722 81022092 -78577691 + L1MB7 LINE L1 5697 6078 -106 2 1203 23 0 0 0 chr3 81022328 81022351 -78577432 + AT_rich Low_complexity Low_complexity 1 23 0 2 1203 230 111 74 0 chr3 81022408 81022462 -78577321 + (GTTTG)n Simple_repeat Simple_repeat 2 59 0 2 1203 484 345 33 19 chr3 81024320 81024533 -78575250 - B3A SINE B2 0 216 1 2 1203 578 14 14 0 chr3 81024584 81024655 -78575128 + (TC)n Simple_repeat Simple_repeat 1 72 0 2 1203 1017 77 0 0 chr3 81024816 81024946 -78574837 + B1_Mm SINE Alu 1 130 -17 3 1203 315 0 0 0 chr3 81026360 81026395 -78573388 + (TA)n Simple_repeat Simple_repeat 2 36 0 3 1203 237 261 46 115 chr3 81026584 81026714 -78573069 - MT-int LTR MaLR -834 264 144 3 1203 769 169 35 0 chr3 81027230 81027372 -78572411 + B1_Mur4 SINE Alu 1 147 -3 3 1203 226 226 19 0 chr3 81028104 81028157 -78571626 + (CA)n Simple_repeat Simple_repeat 1 54 0 3 1203 302 336 0 111 chr3 81029194 81029338 -78570445 - B1F SINE Alu -21 128 1 3 1203 1482 289 130 19 chr3 81030241 81030926 -78568857 + Lx8 LINE L1 6713 7473 0 3 1203 474 91 0 0 chr3 81031482 81031559 -78568224 + (CA)n Simple_repeat Simple_repeat 2 78 0 3 1203 377 214 10 0 chr3 81032840 81032938 -78566845 - Lx9 LINE L1 -2 7642 7544 3 1203 180 233 0 0 chr3 81033134 81033207 -78566576 + (TATG)n Simple_repeat Simple_repeat 4 76 0 3 1203 1171 172 35 112 chr3 81034443 81034790 -78564993 - RMER1A Other Other -2 1028 709 4 1203 4104 66 0 0 chr3 81034800 81035316 -78564467 - L1_Mus1 LINE L1 -9 6558 6043 4 1203 1311 197 130 18 chr3 81035562 81035846 -78563937 - RMER1A Other Other -308 722 407 4 1203 459 35 0 0 chr3 81035960 81036017 -78563766 + (TG)n Simple_repeat Simple_repeat 2 58 0 4 1203 21 0 0 0 chr3 81038294 81038315 -78561468 + AT_rich Low_complexity Low_complexity 1 21 0 4 1203 1084 90 14 0 chr3 81038323 81038468 -78561315 + B1_Mm SINE Alu 1 147 0 4 1203 189 0 0 0 chr3 81038468 81038489 -78561294 + (A)n Simple_repeat Simple_repeat 1 21 0 4 1203 785 107 0 0 chr3 81038583 81038695 -78561088 + B1_Mus1 SINE Alu 35 146 -2 4 1203 2956 255 50 3 chr3 81038713 81039412 -78560371 - Lx7 LINE L1 -441 7255 6524 4 1203 12299 192 48 44 chr3 81039408 81041951 -78557832 + L1_Mur1 LINE L1 2797 5362 -524 4 1203 216 0 0 0 chr3 81041951 81041975 -78557808 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 4 1203 12299 192 48 44 chr3 81041975 81042495 -78557288 + L1_Mur1 LINE L1 5363 5873 -13 4 1203 4974 130 77 6 chr3 81042489 81043285 -78556498 + Lx2B LINE L1 6084 6935 -65 5 1203 22 35 0 0 chr3 81043288 81043317 -78556466 + AT_rich Low_complexity Low_complexity 1 29 0 5 1203 220 222 0 41 chr3 81043323 81043407 -78556376 + A-rich Low_complexity Low_complexity 1 80 0 5 1203 6707 7 0 0 chr3 81043471 81044487 -78555296 - L1Md_A LINE L1 -432 6150 5135 5 1203 4001 7 2 0 chr3 81044487 81044937 -78554846 + L1Md_A LINE L1 6130 6580 -2 5 1203 2415 90 6 16 chr3 81045223 81045586 -78554197 + L1_Mur1 LINE L1 5167 5525 -361 5 1203 226 62 0 0 chr3 81045714 81045746 -78554037 - L1_Mm LINE L1 -3282 2601 2570 5 1203 3602 47 7 0 chr3 81045746 81046190 -78553593 + L1Md_F3 LINE L1 6120 6566 -18 5 1203 306 0 0 0 chr3 81046431 81046465 -78553318 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 5 1203 2304 131 26 0 chr3 81048370 81048721 -78551062 - Lx3A LINE L1 -25 6956 6597 5 1203 709 320 113 24 chr3 81048974 81049441 -78550342 + MER63C DNA AcHobo 1 509 -421 5 1203 244 276 68 68 chr3 81049709 81049841 -78549942 + MER63C DNA AcHobo 715 846 -84 5 1203 477 0 0 0 chr3 81050200 81050253 -78549530 + (TC)n Simple_repeat Simple_repeat 2 54 0 6 1203 492 18 0 0 chr3 81050398 81050455 -78549328 + (TA)n Simple_repeat Simple_repeat 2 58 0 6 1203 279 0 0 0 chr3 81050700 81050731 -78549052 + (A)n Simple_repeat Simple_repeat 1 31 0 6 1203 420 309 112 74 chr3 81050731 81051070 -78548713 - MLT2B3 LTR ERVL -20 534 183 6 1203 528 89 0 0 chr3 81051564 81051643 -78548140 + (CA)n Simple_repeat Simple_repeat 2 80 0 6 1203 216 96 17 103 chr3 81052813 81052871 -78546912 + T-rich Low_complexity Low_complexity 6 58 0 6 1203 423 119 0 0 chr3 81052945 81053012 -78546771 + (TTA)n Simple_repeat Simple_repeat 3 69 0 6 1203 282 29 0 0 chr3 81053053 81053088 -78546695 + (CA)n Simple_repeat Simple_repeat 1 35 0 6 1203 1839 36 5 0 chr3 81053231 81053455 -78546328 - L1Md_T LINE L1 0 6582 6358 6 1203 841 300 108 27 chr3 81053933 81054303 -78545480 + MTE-int LTR MaLR 2 401 -1179 6 1203 495 331 24 0 chr3 81054308 81054477 -78545306 + MTE-int LTR MaLR 542 714 -866 6 1203 22 0 0 0 chr3 81054580 81054602 -78545181 + AT_rich Low_complexity Low_complexity 1 22 0 7 1203 1488 196 29 53 chr3 81055042 81055457 -78544326 - L1_Mur3 LINE L1 -1005 4875 4471 7 1203 4927 12 0 0 chr3 81055479 81056049 -78543734 + L1_Mm LINE L1 3937 4506 -1377 7 1203 3599 184 16 31 chr3 81056046 81056881 -78542902 - L1_Mur3 LINE L1 -2977 2903 2082 7 1203 231 36 0 0 chr3 81056908 81056936 -78542847 + (TG)n Simple_repeat Simple_repeat 1 28 0 7 1203 40703 11 2 6 chr3 81056968 81063175 -78536608 - L1Md_A LINE L1 -2 6580 405 7 1203 2941 182 135 16 chr3 81063176 81064274 -78535509 - L1_Mur3 LINE L1 -3823 2057 836 7 1203 271 107 0 0 chr3 81064277 81064333 -78535450 - Lx2 LINE L1 0 6654 6599 7 1203 3879 151 3 16 chr3 81064335 81065065 -78534718 - Lx2 LINE L1 -762 6235 5517 7 1203 1939 260 39 10 chr3 81065057 81065570 -78534213 - L1_Mur3 LINE L1 -6901 827 300 7 1203 641 279 71 12 chr3 81065667 81065921 -78533862 + Lx9 LINE L1 7368 7636 -8 7 1203 452 333 91 65 chr3 81066721 81066980 -78532803 + ORR1E LTR MaLR 9 278 -81 7 1203 1016 194 18 18 chr3 81066980 81067201 -78532582 - URR1B DNA MER1_type 0 225 5 7 1203 452 333 91 65 chr3 81067201 81067281 -78532502 + ORR1E LTR MaLR 279 357 -2 7 1203 1104 311 99 43 chr3 81067660 81068303 -78531480 - L1_Rod LINE L1 -7 5840 5151 7 1203 3260 95 4 2 chr3 81068303 81068765 -78531018 - L1_Mus3 LINE L1 -7 6631 6169 8 1203 1104 299 75 23 chr3 81068765 81069282 -78530501 - L1_Rod LINE L1 -953 5190 4668 7 1203 366 266 0 2 chr3 81069503 81069598 -78530185 + MTD LTR MaLR 329 421 0 8 1203 273 232 0 0 chr3 81069598 81069654 -78530129 + MTD-int LTR MaLR 1 56 -1202 8 1203 350 69 0 17 chr3 81069654 81069713 -78530070 + (TTTTG)n Simple_repeat Simple_repeat 5 62 0 8 1203 272 330 23 0 chr3 81069713 81069801 -78529982 + MTD-int LTR MaLR 53 142 -1116 8 1203 1490 240 35 35 chr3 81069804 81070175 -78529608 + MTD-int LTR MaLR 733 1103 -155 8 1203 1406 87 36 6 chr3 81071247 81071469 -78528314 - L1_Mus2 LINE L1 -197 6441 6183 8 1203 820 189 60 0 chr3 81071511 81071696 -78528087 - Lx LINE L1 -48 6606 6411 8 1203 1071 102 0 12 chr3 81071697 81071866 -78527917 + L1Md_F2 LINE L1 6403 6569 -13 8 1203 366 235 217 0 chr3 81071874 81071989 -78527794 + MTD LTR MaLR 256 395 -24 8 1203 484 326 77 99 chr3 81073615 81073979 -78525804 - MLT1B LTR MaLR 0 390 35 8 1203 1224 101 0 0 chr3 81075019 81075197 -78524586 + (TTCC)n Simple_repeat Simple_repeat 3 180 0 8 1203 495 0 0 0 chr3 81075199 81075254 -78524529 + (TTTC)n Simple_repeat Simple_repeat 2 56 0 8 1203 1181 87 11 5 chr3 81075525 81075710 -78524073 - L1_Mus4 LINE L1 -7 6629 6444 9 1203 763 112 0 74 chr3 81075710 81075845 -78523938 + L1_Mus4 LINE L1 6314 6438 -198 9 1203 341 184 9 0 chr3 81075893 81076002 -78523781 + CT-rich Low_complexity Low_complexity 1 110 0 9 1203 220 344 0 0 chr3 81076013 81076077 -78523706 - ID2 SINE ID -8 75 12 9 1203 225 0 0 0 chr3 81076890 81076915 -78522868 + (T)n Simple_repeat Simple_repeat 1 25 0 9 1203 247 306 91 10 chr3 81077081 81077180 -78522603 - MER5B DNA MER1_type -29 149 43 9 1203 225 322 82 38 chr3 81078178 81078336 -78521447 - MER5A1 DNA MER1_type -1 165 1 9 1203 571 27 0 0 chr3 81079776 81079850 -78519933 + L1Md_T LINE L1 6508 6581 -1 9 1203 2959 249 115 46 chr3 81080225 81080339 -78519444 - RMER1A Other Other 0 1030 874 9 1203 486 0 0 0 chr3 81080339 81080393 -78519390 + (CA)n Simple_repeat Simple_repeat 2 55 0 9 1203 2959 249 115 46 chr3 81080393 81081238 -78518545 - RMER1A Other Other -157 873 9 9 1203 396 0 0 0 chr3 81081238 81081282 -78518501 + (TG)n Simple_repeat Simple_repeat 2 45 0 9 1203 1146 307 67 18 chr3 81081282 81081478 -78518305 - RMER1A Other Other -790 240 50 9 1203 980 332 11 3 chr3 81081478 81081843 -78517940 + Lx8 LINE L1 6374 6741 -732 1 1203 38 0 0 0 chr3 81081851 81081889 -78517894 + AT_rich Low_complexity Low_complexity 1 38 0 1 1203 338 236 21 14 chr3 81081996 81082030 -78517753 + ORR1B1-int LTR MaLR 612 646 -863 1 1203 1077 88 0 7 chr3 81082030 81082178 -78517605 + B1_Mus2 SINE Alu 1 147 0 1 1203 805 312 120 14 chr3 81082459 81082999 -78516784 - Lx9 LINE L1 -1670 5974 5358 1 1203 495 48 0 0 chr3 81084021 81084083 -78515700 + (TCTA)n Simple_repeat Simple_repeat 4 65 0 1 1203 341 305 170 5 chr3 81084429 81084617 -78515166 + MLT1C LTR MaLR 1 219 -248 1 1203 752 184 69 15 chr3 81084754 81084941 -78514842 + B3 SINE B2 2 191 -4 1 1203 441 0 0 0 chr3 81085790 81085839 -78513944 + (TATG)n Simple_repeat Simple_repeat 4 52 0 1 1203 22 0 0 0 chr3 81085974 81085996 -78513787 + AT_rich Low_complexity Low_complexity 1 22 0 1 1203 273 29 0 0 chr3 81086056 81086090 -78513693 + (TG)n Simple_repeat Simple_repeat 2 35 0 1 1203 781 94 0 0 chr3 81086409 81086515 -78513268 + B2_Mm2 SINE B2 2 107 -88 1 1203 315 0 0 0 chr3 81086577 81086612 -78513171 + (TG)n Simple_repeat Simple_repeat 1 35 0 1 1203 704 223 0 0 chr3 81087192 81087313 -78512470 - B3 SINE B2 -94 122 2 1 1203 240 215 48 97 chr3 81087688 81087791 -78511992 + LTR40c LTR ERVL 6 103 -362 1 1203 26271 98 28 9 chr3 81088243 81092200 -78507583 + L1_Mur1 LINE L1 1710 5742 -144 1 1203 1028 290 83 24 chr3 81092402 81092741 -78507042 - MTEb LTR MaLR -20 359 1 1 1203 351 44 0 0 chr3 81093581 81093626 -78506157 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 1203 326 323 32 0 chr3 81095114 81095238 -78504545 + B1F2 SINE Alu 3 130 -19 1 1203 225 0 0 0 chr3 81096132 81096157 -78503626 + (TG)n Simple_repeat Simple_repeat 2 26 0 1 1203 1005 33 0 0 chr3 81096651 81096772 -78503011 + (CA)n Simple_repeat Simple_repeat 1 121 0 1 1203 21 0 0 0 chr3 81096809 81096830 -78502953 + AT_rich Low_complexity Low_complexity 1 21 0 1 1203 26 30 0 0 chr3 81098229 81098262 -78501521 + AT_rich Low_complexity Low_complexity 1 33 0 1 1203 261 341 0 35 chr3 81098336 81098421 -78501362 + PB1D10 SINE Alu 10 91 -26 1 1203 22 56 0 0 chr3 81098438 81098474 -78501309 + AT_rich Low_complexity Low_complexity 1 36 0 1 1203 223 338 114 42 chr3 81099511 81099678 -78500105 - MIRc SINE MIR -61 207 29 1 1203 182 246 15 15 chr3 81099849 81099981 -78499802 + (TG)n Simple_repeat Simple_repeat 1 132 0 1 1203 929 306 105 15 chr3 81100337 81100662 -78499121 + ORR1E LTR MaLR 1 354 -5 1 1203 1750 238 76 43 chr3 81101290 81101389 -78498394 + Lx9 LINE L1 7030 7139 -505 1 1203 396 0 0 0 chr3 81101389 81101433 -78498350 + (CA)n Simple_repeat Simple_repeat 2 45 0 1 1203 1750 238 76 43 chr3 81101433 81101913 -78497870 + Lx9 LINE L1 7140 7627 -17 1 1203 516 320 48 39 chr3 81102054 81102363 -78497420 - Charlie1a DNA MER1_type -286 1169 858 1 1203 13930 5 0 0 chr3 81102399 81103964 -78495819 + L1Md_A LINE L1 4022 5586 -297 1 1203 8971 5 0 0 chr3 81103964 81104960 -78494823 + L1Md_A LINE L1 5587 6582 0 1 1203 391 322 108 35 chr3 81105103 81105444 -78494339 - Charlie1a DNA MER1_type -794 661 296 1 1203 487 42 14 0 chr3 81105454 81105525 -78494258 + L1Md_F2 LINE L1 6507 6578 -4 1 1203 232 333 130 22 chr3 81105615 81105799 -78493984 - Charlie1a DNA MER1_type -1164 291 88 1 1203 1195 93 11 11 chr3 81106631 81106815 -78492968 - L1_Mus3 LINE L1 -8 6630 6447 1 1203 2225 76 3 0 chr3 81106815 81107117 -78492666 + L1_Mus3 LINE L1 5725 6027 -611 1 1203 251 128 0 0 chr3 81107093 81107132 -78492651 + L1_Mus3 LINE L1 6356 6394 -244 1 1203 1643 222 50 6 chr3 81107936 81108294 -78491489 + ORR1D1 LTR MaLR 1 374 0 1 1203 45 45 0 0 chr3 81108766 81108832 -78490951 + AT_rich Low_complexity Low_complexity 1 66 0 1 1203 197 222 67 0 chr3 81110510 81110555 -78489228 - MIR3 SINE MIR -32 176 129 1 1203 35 0 0 0 chr3 81111593 81111628 -78488155 + AT_rich Low_complexity Low_complexity 1 35 0 1 1203 533 316 219 0 chr3 81112238 81112475 -78487308 + B4A SINE B4 2 290 -2 1 1203 40069 18 2 6 chr3 81112589 81118949 -78480834 - L1Md_A LINE L1 0 6582 254 1 1203 323 349 72 7 chr3 81119516 81119644 -78480139 + RSINE1 SINE B4 3 141 -24 1 1203 252 0 0 0 chr3 81119644 81119672 -78480111 + (CAA)n Simple_repeat Simple_repeat 2 29 0 1 1203 323 349 72 7 chr3 81119672 81119696 -78480087 + RSINE1 SINE B4 142 165 0 1 1203 37 23 0 0 chr3 81119731 81119775 -78480008 + AT_rich Low_complexity Low_complexity 1 44 0 1 1203 250 357 126 42 chr3 81120224 81120414 -78479369 + LTR50 LTR ERVL 2 207 -588 1 1203 9002 3 0 0 chr3 81120746 81122030 -78477753 - L1Md_A LINE L1 0 6582 5299 1 1203 234 0 0 0 chr3 81122981 81123007 -78476776 + (T)n Simple_repeat Simple_repeat 1 26 0 1 1203 236 215 49 37 chr3 81123426 81123508 -78476275 - L1MC4 LINE L1 -539 7503 7421 1 1203 281 217 12 0 chr3 81123940 81124023 -78475760 + GA-rich Low_complexity Low_complexity 3 86 0 1 1203 320 316 21 70 chr3 81124026 81124169 -78475614 - LTR40a LTR ERVL -381 138 3 1 1203 439 271 65 65 chr3 81124950 81125104 -78474679 + MER57C2 LTR ERV1 61 214 -220 1 1203 251 269 14 0 chr3 81126049 81126196 -78473587 + (TG)n Simple_repeat Simple_repeat 1 149 0 1 1203 181 250 104 0 chr3 81127544 81127592 -78472191 + L2a LINE L2 3128 3180 -246 1 1203 3537 181 32 39 chr3 81128181 81128898 -78470885 + RMER6D LTR ERVK 1 712 -8 1 1203 390 186 10 19 chr3 81129070 81129174 -78470609 - Lx9 LINE L1 0 7644 7542 1 1203 498 61 0 0 chr3 81129986 81130052 -78469731 + (TG)n Simple_repeat Simple_repeat 2 67 0 1 1203 612 40 0 0 chr3 81131164 81131239 -78468544 + (TC)n Simple_repeat Simple_repeat 2 76 0 1 1203 319 183 37 28 chr3 81131641 81131748 -78468035 + Lx9 LINE L1 7533 7640 -4 1 1203 186 43 0 0 chr3 81131986 81132009 -78467774 + (TC)n Simple_repeat Simple_repeat 2 24 0 1 1203 381 43 0 0 chr3 81132010 81132057 -78467726 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 1203 3278 187 186 8 chr3 81132058 81132304 -78467479 - Lx7 LINE L1 -35 7661 7357 1 1203 255 61 0 0 chr3 81132304 81132337 -78467446 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 1 1203 3278 187 186 8 chr3 81132337 81132570 -78467213 - Lx7 LINE L1 -340 7356 7060 1 1203 264 111 0 0 chr3 81132570 81132615 -78467168 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 1203 3278 187 186 8 chr3 81132615 81132955 -78466828 - Lx7 LINE L1 -637 7059 6696 1 1204 880 123 13 0 chr3 81133612 81133767 -78466016 + (TC)n Simple_repeat Simple_repeat 2 158 0 1 1204 489 17 0 0 chr3 81133768 81133826 -78465957 + (CA)n Simple_repeat Simple_repeat 2 59 0 1 1204 1375 275 10 3 chr3 81133841 81134155 -78465628 + Lx6 LINE L1 6968 7283 -177 1 1204 1632 174 37 91 chr3 81135379 81135753 -78464030 - ORR1B1 LTR MaLR 0 394 41 1 1204 2453 200 139 6 chr3 81136888 81137427 -78462356 - RMER19C LTR ERVK 0 611 1 1 1204 239 230 0 26 chr3 81137967 81138043 -78461740 - Lx9 LINE L1 -9 7635 7562 1 1204 426 39 0 0 chr3 81138112 81138164 -78461619 + (TG)n Simple_repeat Simple_repeat 1 52 0 1 1204 333 140 0 0 chr3 81138266 81138323 -78461460 + (CA)n Simple_repeat Simple_repeat 2 58 0 1 1204 432 0 0 0 chr3 81138322 81138370 -78461413 + (GA)n Simple_repeat Simple_repeat 2 49 0 1 1204 1221 73 0 0 chr3 81138370 81138535 -78461248 + (GAA)n Simple_repeat Simple_repeat 3 167 0 1 1204 265 276 13 0 chr3 81138540 81138616 -78461167 - Lx9 LINE L1 -763 6881 6805 1 1204 647 299 21 80 chr3 81138616 81138943 -78460840 + Lx9 LINE L1 5665 5972 -1672 1 1204 297 0 0 0 chr3 81139112 81139145 -78460638 + (TC)n Simple_repeat Simple_repeat 2 34 0 1 1204 396 0 0 0 chr3 81139145 81139188 -78460595 + (TA)n Simple_repeat Simple_repeat 1 44 0 1 1204 366 237 52 0 chr3 81139209 81139306 -78460477 + Lx9 LINE L1 6331 6432 -1212 1 1204 237 215 0 0 chr3 81139870 81139963 -78459820 + GA-rich Low_complexity Low_complexity 14 106 0 1 1204 399 41 0 0 chr3 81139963 81140012 -78459771 + (TG)n Simple_repeat Simple_repeat 1 49 0 1 1204 390 395 8 0 chr3 81140012 81140141 -78459642 - RSINE1 SINE B4 -20 145 16 1 1204 235 373 66 9 chr3 81140175 81140402 -78459381 + L2a LINE L2 2668 2907 -512 1 1204 255 389 65 31 chr3 81140429 81140721 -78459062 + L2a LINE L2 2958 3259 -167 1 1204 486 0 0 0 chr3 81141848 81141902 -78457881 + (TG)n Simple_repeat Simple_repeat 2 55 0 1 1204 770 233 60 64 chr3 81142197 81142503 -78457280 + ORR1C1 LTR MaLR 1 309 -20 1 1204 191 61 30 0 chr3 81142503 81142536 -78457247 + (TAAAAA)n Simple_repeat Simple_repeat 3 36 0 1 1204 489 17 0 0 chr3 81143428 81143486 -78456297 + (TG)n Simple_repeat Simple_repeat 2 59 0 1 1204 373 340 48 15 chr3 81143861 81144067 -78455716 - Tigger7 DNA MER2_type -22 2469 2257 1 1204 193 169 0 53 chr3 81144074 81144149 -78455634 + (TCTCTG)n Simple_repeat Simple_repeat 2 72 0 1 1204 210 128 0 0 chr3 81144403 81144442 -78455341 + (TC)n Simple_repeat Simple_repeat 2 40 0 1 1204 288 111 0 0 chr3 81144443 81144488 -78455295 + (TA)n Simple_repeat Simple_repeat 1 45 0 1 1204 538 301 63 11 chr3 81144488 81144663 -78455120 - B3A SINE B2 -11 187 4 1 1204 718 290 46 48 chr3 81144684 81145083 -78454700 - Lx7 LINE L1 -1470 6003 5582 1 1204 294 295 65 28 chr3 81145120 81145228 -78454555 + Lx8 LINE L1 6250 6361 -1112 1 1204 464 329 123 18 chr3 81145197 81145478 -78454305 + Lx8 LINE L1 6484 6789 -907 1 1204 252 125 0 45 chr3 81145478 81145545 -78454238 + (TA)n Simple_repeat Simple_repeat 2 65 0 1 1204 411 56 0 0 chr3 81145581 81145635 -78454148 + (TG)n Simple_repeat Simple_repeat 1 54 0 1 1204 816 350 80 5 chr3 81145635 81146043 -78453740 + Lx8 LINE L1 6816 7255 -218 1 1204 45 34 0 0 chr3 81146235 81146294 -78453489 + AT_rich Low_complexity Low_complexity 1 59 0 1 1204 191 212 50 0 chr3 81146753 81146833 -78452950 + GA-rich Low_complexity Low_complexity 1 84 0 1 1204 342 45 0 0 chr3 81146899 81146943 -78452840 + (CA)n Simple_repeat Simple_repeat 2 45 0 1 1204 387 0 0 0 chr3 81147422 81147465 -78452318 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 1 1204 24 0 0 0 chr3 81148374 81148398 -78451385 + AT_rich Low_complexity Low_complexity 1 24 0 1 1204 273 351 179 36 chr3 81149063 81149480 -78450303 + L2a LINE L2 2716 3199 -227 1 1204 1033 288 61 37 chr3 81149483 81149890 -78449893 - MTC LTR MaLR -4 417 1 1 1204 586 133 57 0 chr3 81150313 81150418 -78449365 + B1_Mus2 SINE Alu 36 146 -1 2 1204 240 35 0 0 chr3 81150477 81150506 -78449277 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 2 1204 1306 197 17 62 chr3 81151828 81152185 -78447598 - Lx7 LINE L1 0 7696 7356 2 1204 24 67 0 0 chr3 81152188 81152233 -78447550 + AT_rich Low_complexity Low_complexity 1 45 0 2 1204 3936 259 42 7 chr3 81152285 81153277 -78446506 - Lx7 LINE L1 -329 7367 6341 2 1204 1499 226 87 32 chr3 81153287 81153794 -78445989 + RMER4B LTR ERVK 17 585 0 2 1204 2097 251 28 41 chr3 81153800 81154440 -78445343 - Lx7 LINE L1 -1358 6338 5707 2 1204 3368 160 65 24 chr3 81154466 81154634 -78445149 - L1_Mur3 LINE L1 -1748 4132 3940 2 1204 4152 52 6 2 chr3 81154634 81155158 -78444625 - L1Md_F3 LINE L1 -1 6583 6058 2 1204 3368 160 65 24 chr3 81155158 81155726 -78444057 - L1_Mur3 LINE L1 -1941 3939 3368 2 1204 267 257 123 21 chr3 81155739 81155926 -78443857 + RMER17B LTR ERVK 636 841 -117 2 1204 4628 202 55 28 chr3 81155972 81157098 -78442685 - L1_Mur3 LINE L1 -3021 2859 1703 2 1204 447 19 0 0 chr3 81157098 81157150 -78442633 + (TTTCC)n Simple_repeat Simple_repeat 3 54 0 2 1204 4628 202 55 28 chr3 81157150 81157273 -78442510 - L1_Mur3 LINE L1 -4178 1702 1576 2 1204 1049 85 0 113 chr3 81157282 81157467 -78442316 - ORR1A2 LTR MaLR -163 164 1 2 1204 8305 165 55 10 chr3 81157468 81159019 -78440764 - ORR1A2-int LTR MaLR -1 1962 341 2 1204 648 211 0 37 chr3 81159079 81159241 -78440542 - RMER1C Other Other -8 1334 1179 2 1204 795 304 109 14 chr3 81161859 81162152 -78437631 + MTE2b LTR MaLR 55 375 -4 2 1204 269 347 16 31 chr3 81162208 81162336 -78437447 + Tigger5 DNA MER2_type 2278 2403 -3 2 1204 472 327 62 43 chr3 81163215 81163350 -78436433 + B3 SINE B2 4 149 -67 2 1204 2689 187 102 14 chr3 81163350 81163984 -78435799 - RMER6C LTR ERVK 0 690 1 2 1204 472 327 62 43 chr3 81163984 81164056 -78435727 + B3 SINE B2 150 215 -1 2 1204 1334 149 14 0 chr3 81164630 81164852 -78434931 + URR1A DNA MER1_type 1 225 -1 2 1204 282 171 0 0 chr3 81165100 81165170 -78434613 + T-rich Low_complexity Low_complexity 1 70 0 2 1204 36831 24 0 0 chr3 81165172 81171605 -78428178 - L1Md_T LINE L1 0 6585 56 2 1204 24 0 0 0 chr3 81172369 81172393 -78427390 + AT_rich Low_complexity Low_complexity 1 24 0 2 1204 535 315 56 74 chr3 81172680 81172896 -78426887 - MLT1A LTR MaLR -42 332 121 2 1204 399 331 45 11 chr3 81174071 81174248 -78425535 - Tigger5 DNA MER2_type -2217 189 7 2 1204 198 0 0 0 chr3 81174813 81174835 -78424948 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 2 1204 1346 91 5 5 chr3 81175271 81175459 -78424324 + B2_Mm1t SINE B2 1 188 -5 2 1204 1235 286 64 28 chr3 81175906 81176294 -78423489 + MTD LTR MaLR 18 419 0 2 1204 481 329 66 0 chr3 81178247 81178399 -78421384 - RMER19C LTR ERVK -307 304 143 2 1204 1968 214 47 70 chr3 81178393 81178954 -78420829 - RMER19B LTR ERVK -238 664 98 2 1204 1223 220 49 18 chr3 81178984 81179270 -78420513 - RMER19A LTR ERVK -307 304 2 2 1204 243 0 0 0 chr3 81180787 81180814 -78418969 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 2 1204 1098 22 0 21 chr3 81181090 81181230 -78418553 - B1_Mm SINE Alu 0 147 11 2 1204 567 53 0 0 chr3 81182573 81182648 -78417135 + (TG)n Simple_repeat Simple_repeat 2 76 0 2 1204 252 0 0 0 chr3 81184336 81184364 -78415419 + (TC)n Simple_repeat Simple_repeat 2 29 0 2 1204 234 0 0 0 chr3 81184364 81184389 -78415394 + (TG)n Simple_repeat Simple_repeat 1 26 0 2 1204 23 33 0 0 chr3 81185151 81185181 -78414602 + AT_rich Low_complexity Low_complexity 1 30 0 2 1204 1585 106 13 0 chr3 81185287 81185523 -78414260 - L1_Mus3 LINE L1 -7 6631 6393 2 1204 678 109 0 0 chr3 81185524 81185616 -78414167 + L1_Mus3 LINE L1 6290 6381 -257 2 1204 22 35 0 0 chr3 81186414 81186443 -78413340 + AT_rich Low_complexity Low_complexity 1 29 0 2 1204 1945 68 198 3 chr3 81186666 81186959 -78412824 + L1Md_F2 LINE L1 6220 6569 -13 2 1204 765 300 127 44 chr3 81186964 81187772 -78412011 + L1MA9 LINE L1 5257 6127 -173 2 1204 251 353 9 47 chr3 81187875 81187982 -78411801 - B1F1 SINE Alu -46 103 1 2 1204 1131 102 51 6 chr3 81188686 81188863 -78410920 - ORR1A2 LTR MaLR -2 325 141 2 1204 259 366 64 86 chr3 81188877 81189110 -78410673 + B4A SINE B4 43 270 -22 2 1204 387 0 0 0 chr3 81189112 81189155 -78410628 + (TG)n Simple_repeat Simple_repeat 2 44 0 2 1204 635 84 0 10 chr3 81189162 81189258 -78410525 + (TA)n Simple_repeat Simple_repeat 1 95 0 2 1204 242 269 119 16 chr3 81189371 81189556 -78410227 + L1M5 LINE L1 4182 4385 -1761 2 1204 288 200 0 0 chr3 81189757 81189832 -78409951 + (TCTG)n Simple_repeat Simple_repeat 4 78 0 2 1204 22 0 0 0 chr3 81189915 81189937 -78409846 + AT_rich Low_complexity Low_complexity 1 22 0 2 1204 663 261 79 41 chr3 81189997 81190337 -78409446 - L1MA9 LINE L1 -8 6304 5952 2 1204 285 98 0 0 chr3 81190344 81190385 -78409398 + (TC)n Simple_repeat Simple_repeat 2 42 0 2 1204 523 302 61 119 chr3 81192519 81192812 -78406971 - RLTR19 LTR ERVK 0 506 231 2 1204 239 0 32 0 chr3 81192868 81192899 -78406884 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 2 1204 349 299 50 67 chr3 81193045 81193224 -78406559 + HAL1-3A_ME LINE L1 2290 2465 -393 2 1204 246 338 14 0 chr3 81194466 81194540 -78405243 - Charlie7 DNA MER1_type -1912 700 626 2 1204 3171 265 72 10 chr3 81195353 81196239 -78403544 + Lx7 LINE L1 6527 7467 -229 2 1204 289 299 44 15 chr3 81196307 81196443 -78403340 + Lx6 LINE L1 7310 7449 -11 2 1204 225 339 65 41 chr3 81196913 81197011 -78402772 + ORR1E LTR MaLR 9 113 -246 2 1204 2354 204 64 64 chr3 81197011 81197586 -78402197 + RMER15 LTR ERVL 1 575 0 2 1204 225 339 65 41 chr3 81197586 81197610 -78402173 + ORR1E LTR MaLR 114 134 -225 2 1204 6652 72 9 2 chr3 81197717 81198583 -78401200 - L1_Mus1 LINE L1 -2 6565 5694 2 1204 9579 80 2 1 chr3 81198577 81199856 -78399927 + L1_Mus1 LINE L1 4430 5709 -174 2 1204 5541 109 6 4 chr3 81199855 81200681 -78399102 - L1_Mm LINE L1 -771 5112 4285 2 1204 610 106 18 9 chr3 81201003 81201117 -78398666 - Lx2A LINE L1 -1 7007 6893 2 1204 1712 102 0 12 chr3 81201752 81202011 -78397772 - L1_Mus4 LINE L1 0 6636 6381 2 1204 324 64 0 0 chr3 81202372 81202419 -78397364 + (TTTTG)n Simple_repeat Simple_repeat 3 49 0 2 1204 730 263 28 142 chr3 81202779 81203244 -78396539 - RLTR11B LTR ERVK -41 412 1 2 1204 22 35 0 0 chr3 81203456 81203485 -78396298 + AT_rich Low_complexity Low_complexity 1 29 0 2 1204 911 293 59 10 chr3 81203498 81204041 -78395742 - L1MA6 LINE L1 -128 6163 5590 2 1204 366 292 139 36 chr3 81204193 81204445 -78395338 + Tigger7 DNA MER2_type 2202 2479 -12 2 1204 453 189 0 0 chr3 81204448 81204538 -78395245 + (TA)n Simple_repeat Simple_repeat 1 90 0 2 1204 303 331 20 68 chr3 81204873 81205019 -78394764 - L1ME3 LINE L1 -81 6081 5943 2 1204 186 43 0 0 chr3 81205439 81205462 -78394321 + (TTG)n Simple_repeat Simple_repeat 2 24 0 2 1204 297 201 31 0 chr3 81205568 81205646 -78394137 - L1ME3 LINE L1 -424 5760 5681 2 1204 6014 128 5 2 chr3 81205780 81206710 -78393073 - L1_Mus3 LINE L1 -244 5639 4707 2 1204 6423 102 5 12 chr3 81206706 81207655 -78392128 + L1_Mus3 LINE L1 5696 6638 0 2 1204 3415 56 9 0 chr3 81207723 81208152 -78391631 + L1_Mus1 LINE L1 6134 6566 -1 2 1204 302 0 26 0 chr3 81208277 81208315 -78391468 + (TTG)n Simple_repeat Simple_repeat 2 40 0 2 1204 311 221 152 37 chr3 81208498 81208662 -78391121 - L1M5 LINE L1 -2145 4001 3819 2 1204 25 0 0 0 chr3 81208665 81208690 -78391093 + AT_rich Low_complexity Low_complexity 1 25 0 2 1204 570 15 0 0 chr3 81209566 81209633 -78390150 + (TC)n Simple_repeat Simple_repeat 2 68 0 2 1204 874 299 89 19 chr3 81209803 81210117 -78389666 + ORR1E LTR MaLR 22 357 -2 2 1204 307 369 16 0 chr3 81210571 81210693 -78389090 - RMER12 LTR ERVK -472 850 727 2 1204 388 329 68 14 chr3 81210893 81211041 -78388742 + B3A SINE B2 1 156 -42 2 1204 628 78 39 0 chr3 81211395 81211497 -78388286 + (GAAA)n Simple_repeat Simple_repeat 3 108 0 2 1204 1177 69 0 0 chr3 81211568 81211713 -78388070 + B1_Mus2 SINE Alu 1 145 -2 2 1204 382 91 26 0 chr3 81211732 81211809 -78387974 + (CAAA)n Simple_repeat Simple_repeat 2 80 0 2 1204 212 265 0 0 chr3 81211881 81211930 -78387853 + (CAT)n Simple_repeat Simple_repeat 2 50 0 2 1204 358 232 59 35 chr3 81213282 81213367 -78386416 + B1F SINE Alu 10 96 -53 2 1204 473 195 210 8 chr3 81214498 81214617 -78385166 - RMER19B LTR ERVK -451 451 309 2 1204 192 275 60 36 chr3 81215085 81215168 -78384615 - L3 LINE CR1 -4327 162 78 2 1204 665 86 43 0 chr3 81215434 81215573 -78384210 + (TTTTG)n Simple_repeat Simple_repeat 1 145 0 2 1204 306 320 157 18 chr3 81215573 81215853 -78383930 - Charlie2b DNA MER1_type -16 2766 2448 2 1204 180 111 0 0 chr3 81215955 81215982 -78383801 + (TG)n Simple_repeat Simple_repeat 2 28 0 2 1204 392 250 54 63 chr3 81215983 81216188 -78383595 - Lx9 LINE L1 -127 7517 7315 2 1204 495 294 14 34 chr3 81216352 81216500 -78383283 + RSINE1 SINE B4 4 148 -17 2 1204 26 82 0 0 chr3 81216978 81217039 -78382744 + AT_rich Low_complexity Low_complexity 1 61 0 2 1204 1159 199 16 8 chr3 81218306 81218564 -78381219 + L1_Mur3 LINE L1 4794 5053 -827 2 1204 240 143 0 0 chr3 81218575 81218617 -78381166 + (GGA)n Simple_repeat Simple_repeat 2 43 0 2 1204 1863 199 39 3 chr3 81218623 81218985 -78380798 + Lx6 LINE L1 6344 6718 -742 2 1204 209 299 0 0 chr3 81219779 81219846 -78379937 + (TGGA)n Simple_repeat Simple_repeat 2 68 0 2 1204 684 84 46 0 chr3 81219847 81219978 -78379805 + (TAGA)n Simple_repeat Simple_repeat 2 138 0 2 1204 205 282 88 35 chr3 81220095 81220209 -78379574 + MIRb SINE MIR 24 143 -125 2 1204 431 290 77 5 chr3 81220776 81220984 -78378799 + L1M3 LINE L1 3578 3800 -2340 2 1204 184 149 21 21 chr3 81221313 81221361 -78378422 + GA-rich Low_complexity Low_complexity 3 50 0 2 1204 1130 117 0 6 chr3 81221362 81221542 -78378241 + (GAA)n Simple_repeat Simple_repeat 1 179 0 2 1204 213 94 0 0 chr3 81221542 81221574 -78378209 + (CAG)n Simple_repeat Simple_repeat 1 32 0 2 1204 1143 70 0 0 chr3 81222160 81222303 -78377480 + B1_Mm SINE Alu 1 143 -4 2 1204 546 16 0 0 chr3 81222305 81222368 -78377415 + (TAA)n Simple_repeat Simple_repeat 2 64 0 3 1204 332 186 92 10 chr3 81222406 81222504 -78377279 + L1MB1 LINE L1 5325 5430 -759 3 1204 237 119 0 23 chr3 81223257 81223300 -78376483 + L1MB1 LINE L1 5426 5467 -704 3 1204 340 290 80 114 chr3 81223407 81223615 -78376168 + L1MB1 LINE L1 5592 5824 -344 3 1204 651 26 0 0 chr3 81223615 81223692 -78376091 + (CA)n Simple_repeat Simple_repeat 2 78 0 3 1204 378 0 0 0 chr3 81223692 81223733 -78376050 + (GA)n Simple_repeat Simple_repeat 2 43 0 3 1204 340 290 80 114 chr3 81223733 81224021 -78375762 + L1MB1 LINE L1 5825 6071 -97 3 1204 2211 187 11 100 chr3 81224685 81225213 -78374570 - RMER15 LTR ERVL -94 481 1 3 1204 252 0 0 0 chr3 81226157 81226185 -78373598 + (CA)n Simple_repeat Simple_repeat 1 28 0 3 1204 23 54 0 0 chr3 81226436 81226473 -78373310 + AT_rich Low_complexity Low_complexity 1 37 0 3 1204 278 26 0 25 chr3 81226530 81226570 -78373213 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 3 1204 1188 233 30 81 chr3 81226571 81227005 -78372778 - Lx9 LINE L1 -10 7634 7223 3 1204 228 233 0 0 chr3 81228155 81228198 -78371585 + polypyrimidine Low_complexity Low_complexity 3 45 0 3 1204 369 109 0 0 chr3 81228208 81228263 -78371520 + (GGA)n Simple_repeat Simple_repeat 3 57 0 3 1204 26 64 0 0 chr3 81228382 81228429 -78371354 + AT_rich Low_complexity Low_complexity 1 47 0 3 1204 396 0 0 0 chr3 81228480 81228524 -78371259 + (CAA)n Simple_repeat Simple_repeat 2 45 0 3 1204 186 43 0 0 chr3 81228974 81228997 -78370786 + (CAA)n Simple_repeat Simple_repeat 2 24 0 3 1204 1686 78 0 53 chr3 81229905 81229945 -78369838 + L1_Mus1 LINE L1 5971 5999 -568 3 1204 1514 62 5 0 chr3 81229945 81230137 -78369646 + B2_Mm1t SINE B2 1 193 0 3 1204 1686 78 0 53 chr3 81230137 81230339 -78369444 + L1_Mus1 LINE L1 6000 6200 -367 3 1204 1798 52 34 4 chr3 81230342 81230575 -78369208 + L1_Mus1 LINE L1 6328 6567 0 3 1204 180 0 0 0 chr3 81230580 81230600 -78369183 + (CAA)n Simple_repeat Simple_repeat 2 21 0 3 1204 361 373 107 47 chr3 81231320 81231431 -78368352 + L2 LINE L2 2521 2622 -797 3 1204 282 116 0 0 chr3 81231431 81231474 -78368309 + (TCTG)n Simple_repeat Simple_repeat 2 44 0 3 1204 361 373 107 47 chr3 81231474 81231868 -78367915 + L2 LINE L2 2623 3056 -363 3 1204 217 279 14 56 chr3 81231986 81232058 -78367725 - L2a LINE L2 -1 3425 3357 3 1204 237 356 0 0 chr3 81232070 81232143 -78367640 - Lx7 LINE L1 -2034 5662 5590 3 1204 502 225 26 26 chr3 81232510 81232624 -78367159 - B4A SINE B4 0 292 179 3 1204 1424 166 54 18 chr3 81232626 81232668 -78367115 - Lx2 LINE L1 -7 6647 6600 3 1204 5207 105 25 29 chr3 81232668 81233483 -78366300 - Lx LINE L1 -3 6651 5841 3 1204 1477 134 26 0 chr3 81233483 81233716 -78366067 - Lx2 LINE L1 -50 6947 6710 3 1204 1209 101 0 0 chr3 81233719 81233887 -78365896 + Lx2 LINE L1 6326 6493 -504 3 1204 1132 39 77 6 chr3 81233888 81234044 -78365739 + L1Md_F2 LINE L1 6404 6570 -12 3 1204 1359 239 199 21 chr3 81234882 81235091 -78364692 - RMER19C LTR ERVK 0 611 401 3 1204 306 0 0 0 chr3 81235091 81235125 -78364658 + (CAG)n Simple_repeat Simple_repeat 1 34 0 3 1204 1359 239 199 21 chr3 81235125 81235432 -78364351 - RMER19C LTR ERVK -211 400 5 3 1204 564 15 0 0 chr3 81237032 81237097 -78362686 + (CA)n Simple_repeat Simple_repeat 2 66 0 3 1204 560 135 15 0 chr3 81237102 81237235 -78362548 + (CAGAGA)n Simple_repeat Simple_repeat 2 136 0 3 1204 195 42 0 0 chr3 81237813 81237837 -78361946 + (T)n Simple_repeat Simple_repeat 1 24 0 3 1204 639 39 0 0 chr3 81238065 81238143 -78361640 + (TG)n Simple_repeat Simple_repeat 1 78 0 3 1204 315 0 0 0 chr3 81238143 81238177 -78361606 + (GA)n Simple_repeat Simple_repeat 1 35 0 3 1204 304 353 49 32 chr3 81240728 81240792 -78358991 + HAL1-3A_ME LINE L1 2666 2730 -128 3 1204 402 85 0 0 chr3 81240792 81240851 -78358932 + (TGGA)n Simple_repeat Simple_repeat 2 60 0 3 1204 304 353 49 32 chr3 81240851 81240909 -78358874 + HAL1-3A_ME LINE L1 2731 2790 -68 3 1204 23 33 0 0 chr3 81241239 81241269 -78358514 + AT_rich Low_complexity Low_complexity 1 30 0 3 1204 318 308 49 16 chr3 81241430 81241552 -78358231 - ORR1E LTR MaLR -212 147 22 3 1204 591 176 0 0 chr3 81241705 81241830 -78357953 + (TG)n Simple_repeat Simple_repeat 2 126 0 3 1204 1091 174 11 126 chr3 81242163 81242426 -78357357 + RLTR25B LTR ERVK 216 448 -580 3 1204 451 154 112 182 chr3 81242987 81243130 -78356653 + RLTR25B LTR ERVK 620 752 -276 3 1204 522 31 0 0 chr3 81243130 81243194 -78356589 + (GA)n Simple_repeat Simple_repeat 2 65 0 3 1204 291 245 160 20 chr3 81243194 81243294 -78356489 + RLTR25B LTR ERVK 904 1017 -11 3 1204 740 109 0 33 chr3 81243591 81243729 -78356054 - L1M4c LINE L1 -2275 1875 1772 3 1204 3285 158 30 5 chr3 81244101 81244692 -78355091 - Lx4A LINE L1 -804 6254 5649 3 1204 4479 165 16 4 chr3 81244693 81245453 -78354330 + Lx4A LINE L1 6289 7057 -1 3 1204 390 42 0 0 chr3 81245464 81245512 -78354271 + (TATG)n Simple_repeat Simple_repeat 4 51 0 3 1204 27 92 0 0 chr3 81246025 81246101 -78353682 + AT_rich Low_complexity Low_complexity 1 76 0 3 1204 30689 91 9 11 chr3 81246240 81251404 -78348379 + L1Md_F2 LINE L1 442 5586 -297 3 1204 7866 58 1 1 chr3 81251405 81252386 -78347397 + L1Md_F2 LINE L1 5588 6568 -14 3 1204 2720 48 3 0 chr3 81252407 81252741 -78347042 + L1Md_F2 LINE L1 5252 5586 -297 3 1204 7350 72 17 18 chr3 81252741 81253738 -78346045 + L1Md_F2 LINE L1 5587 6582 0 3 1204 4748 127 24 20 chr3 81253732 81254521 -78345262 + L1_Mus4 LINE L1 5827 6618 -18 3 1204 1660 89 8 24 chr3 81254518 81254772 -78345011 + L1Md_F2 LINE L1 6316 6565 -17 3 1204 354 301 41 0 chr3 81254790 81254936 -78344847 + CT-rich Low_complexity Low_complexity 4 155 0 3 1204 680 272 103 16 chr3 81255416 81255659 -78344124 - Lx8 LINE L1 -29 7444 7181 3 1204 189 0 0 0 chr3 81257121 81257142 -78342641 + (TTATA)n Simple_repeat Simple_repeat 3 23 0 3 1204 259 304 43 17 chr3 81258247 81258364 -78341419 - MLT-int LTR MaLR -1614 121 2 3 1204 240 319 121 40 chr3 81259425 81259598 -78340185 - ORR1E LTR MaLR -109 250 64 3 1204 260 351 53 34 chr3 81259762 81259971 -78339812 + Charlie4 DNA MER1_type 66 278 -1683 3 1204 556 288 0 21 chr3 81260046 81260188 -78339595 + B1_Mur2 SINE Alu 5 143 -6 3 1204 441 316 22 43 chr3 81261400 81261585 -78338198 - MLT2B4 LTR ERVL -341 215 35 3 1204 1990 60 0 0 chr3 81261945 81262194 -78337589 - Lx3A LINE L1 -102 6879 6631 3 1204 974 208 8 73 chr3 81262252 81262511 -78337272 + Lx7 LINE L1 5683 5924 -1772 3 1204 1229 249 47 68 chr3 81262534 81263114 -78336669 - L1_Mur3 LINE L1 -4450 1430 852 3 1204 3325 165 35 49 chr3 81263451 81264102 -78335681 + RLTR26 LTR ERVK 1 642 0 3 150 4665 154 78 5 chr3 81264415 81265231 -78334552 - Lx2A1 LINE L1 -545 6463 5588 3 1205 2812 151 4 19 chr3 81265248 81265727 -78334056 + Lx2B LINE L1 6522 6993 -7 3 1205 654 276 86 30 chr3 81265791 81265989 -78333794 - B3 SINE B2 -6 210 2 3 1205 717 45 0 0 chr3 81265996 81266085 -78333698 + (GA)n Simple_repeat Simple_repeat 2 90 0 3 1205 1383 200 142 0 chr3 81266485 81266830 -78332953 + Lx9 LINE L1 7204 7597 -47 3 1205 203 88 0 29 chr3 81267461 81267496 -78332287 + (TA)n Simple_repeat Simple_repeat 1 34 0 3 1205 1402 280 69 5 chr3 81267598 81268003 -78331780 - Lx8 LINE L1 -663 6810 6380 3 1205 469 254 8 0 chr3 81269570 81269696 -78330087 - ID_B1 SINE B4 0 224 98 3 1205 249 305 29 0 chr3 81269605 81269710 -78330073 - B1_Mm SINE Alu -38 109 2 3 1205 1456 121 0 9 chr3 81270479 81270704 -78329079 - Lx2 LINE L1 0 6997 6775 3 1205 3309 119 56 4 chr3 81270704 81271219 -78328564 - Lx2 LINE L1 -354 6643 6102 3 1205 7941 151 34 12 chr3 81271220 81272436 -78327347 - L1_Mur2 LINE L1 -1157 4720 3479 3 1205 245 27 54 0 chr3 81272436 81272473 -78327310 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 3 1205 7941 151 34 12 chr3 81272473 81272774 -78327009 - L1_Mur2 LINE L1 -2399 3478 3172 3 1205 1012 134 6 11 chr3 81272774 81272955 -78326828 + GA-rich Low_complexity Low_complexity 1 180 0 3 1205 4348 77 0 38 chr3 81273386 81273997 -78325786 - L1_Mus2 LINE L1 0 6566 5979 3 1205 678 231 0 0 chr3 81274723 81274866 -78324917 - B1_Mus2 SINE Alu -3 144 2 3 1205 476 337 42 11 chr3 81275013 81275202 -78324581 + ID_B1 SINE B4 15 209 -15 3 1205 240 149 0 0 chr3 81275204 81275251 -78324532 + (CAT)n Simple_repeat Simple_repeat 3 49 0 3 1205 2566 90 77 0 chr3 81275251 81275640 -78324143 - BGLII_Mus LTR ERVK 0 422 4 3 1205 321 89 0 0 chr3 81275640 81275685 -78324098 + (CAT)n Simple_repeat Simple_repeat 2 46 0 3 1205 2088 278 58 15 chr3 81275788 81276395 -78323388 - Lx8 LINE L1 -624 6849 6217 3 1205 3131 295 62 36 chr3 81276501 81278611 -78321172 - L1_Rod LINE L1 -2491 3389 1235 3 1205 615 283 126 35 chr3 81278766 81278964 -78320819 + ID_B1 SINE B4 5 220 -4 3 1205 22 35 0 0 chr3 81279030 81279059 -78320724 + AT_rich Low_complexity Low_complexity 1 29 0 3 1205 434 368 26 0 chr3 81279060 81279215 -78320568 - RSINE1 SINE B4 -1 164 6 3 1205 2473 207 8 21 chr3 81279902 81280425 -78319358 - RMER20A LTR ERVK 0 516 1 3 1205 189 107 0 0 chr3 81280743 81280771 -78319012 + (GGGAGA)n Simple_repeat Simple_repeat 1 28 0 3 1205 1008 301 29 20 chr3 81281110 81281459 -78318324 + RMER15-int LTR ERVL 485 836 -4163 3 1205 265 220 151 8 chr3 81282286 81282405 -78317378 + Lx9 LINE L1 7502 7637 -7 3 1205 574 255 88 58 chr3 81283251 81283429 -78316354 + MTEb LTR MaLR 8 195 -184 3 1205 468 321 82 71 chr3 81284173 81284441 -78315342 + B4 SINE B4 3 273 -19 3 1205 471 380 102 16 chr3 81285419 81285793 -78313990 - MLT1D LTR MaLR -66 439 34 3 1205 1674 143 31 0 chr3 81288863 81289149 -78310634 - Lx2 LINE L1 -6 6991 6697 3 1205 5559 148 13 21 chr3 81289149 81290140 -78309643 + Lx LINE L1 4846 5847 -39 3 1205 450 0 0 0 chr3 81290140 81290190 -78309593 + (TC)n Simple_repeat Simple_repeat 1 50 0 3 1205 2378 109 5 73 chr3 81290190 81290366 -78309417 + Lx LINE L1 5845 5993 -661 3 1205 306 73 0 0 chr3 81291098 81291139 -78308644 + (A)n Simple_repeat Simple_repeat 1 41 0 3 1205 488 312 76 21 chr3 81292078 81292208 -78307575 - Lx8 LINE L1 0 7473 7336 3 1205 193 0 61 30 chr3 81292208 81292241 -78307542 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 3 1205 488 312 76 21 chr3 81292241 81292346 -78307437 - Lx8 LINE L1 -138 7335 7227 3 1205 1562 294 99 35 chr3 81292412 81293173 -78306610 - Lx8 LINE L1 -375 7098 6290 3 1205 5453 238 33 40 chr3 81293197 81294469 -78305314 + Lx7 LINE L1 6276 7544 -152 3 1205 360 0 0 0 chr3 81294469 81294509 -78305274 + (CATAT)n Simple_repeat Simple_repeat 2 41 0 3 1205 5453 238 33 40 chr3 81294509 81294667 -78305116 + Lx7 LINE L1 7545 7695 -1 3 1205 407 236 26 73 chr3 81294702 81294853 -78304930 - Lx8 LINE L1 -1197 6276 6133 3 1205 5034 80 7 3 chr3 81294865 81295556 -78304227 - L1_Mus1 LINE L1 -1 6566 5873 3 1205 2008 37 0 4 chr3 81295556 81295802 -78303981 + L1_Mus2 LINE L1 5695 5939 -627 4 1205 279 355 36 18 chr3 81296107 81296219 -78303564 + B1F SINE Alu 10 123 -26 4 1205 395 303 94 98 chr3 81296231 81296465 -78303318 + B4A SINE B4 2 234 -58 4 1205 213 241 37 0 chr3 81297008 81297062 -78302721 + CT-rich Low_complexity Low_complexity 4 59 0 4 1205 198 103 0 0 chr3 81297078 81297107 -78302676 + (TATG)n Simple_repeat Simple_repeat 2 30 0 4 1205 220 362 0 0 chr3 81297149 81297218 -78302565 - B3 SINE B2 -99 117 49 4 1205 528 16 0 0 chr3 81297219 81297280 -78302503 + (TC)n Simple_repeat Simple_repeat 2 62 0 4 1205 237 98 0 0 chr3 81297280 81297320 -78302463 + (TG)n Simple_repeat Simple_repeat 2 42 0 4 1205 369 333 15 15 chr3 81297369 81297503 -78302280 - ID_B1 SINE B4 -9 215 82 4 1205 1368 289 39 107 chr3 81297584 81298126 -78301657 - RLTR18B LTR ERVK -4 508 4 4 1205 251 356 89 9 chr3 81299110 81299351 -78300432 + MT2A LTR ERVL 261 552 -10 4 1205 1560 116 104 7 chr3 81300718 81301005 -78298778 - RLTR10A LTR ERVK 0 411 97 4 1205 2869 82 47 19 chr3 81301070 81301495 -78298288 - RLTR10-int LTR ERVK -248 1739 1303 4 1205 1280 90 72 99 chr3 81301583 81301805 -78297978 - IAP-d-int LTR ERVK -199 6343 6128 4 1205 983 69 295 0 chr3 81301808 81302005 -78297778 - IAP-d-int LTR ERVK -521 6021 5766 4 1205 3228 41 8 0 chr3 81302003 81302394 -78297389 - IAP-d-int LTR ERVK -1142 5400 5007 4 1205 1230 125 11 40 chr3 81302394 81302794 -78296989 - IAP-d-int LTR ERVK -1385 602 295 4 1205 1626 132 12 71 chr3 81302796 81303121 -78296662 - RLTR10A LTR ERVK 0 411 106 4 1205 259 127 41 27 chr3 81303279 81303352 -78296431 + A-rich Low_complexity Low_complexity 2 75 0 4 1205 1811 172 33 59 chr3 81303789 81304178 -78295605 - RLTR30 LTR ERV1 0 379 1 4 1205 1258 213 136 129 chr3 81305602 81306029 -78293754 + MT2A LTR ERVL 2 458 -75 4 1205 231 36 0 0 chr3 81306029 81306057 -78293726 + (TA)n Simple_repeat Simple_repeat 2 29 0 4 1205 1258 213 136 129 chr3 81306057 81306157 -78293626 + MT2A LTR ERVL 459 533 0 4 1205 207 207 17 0 chr3 81306584 81306642 -78293141 + (TTG)n Simple_repeat Simple_repeat 2 60 0 4 1205 502 342 92 15 chr3 81307227 81307500 -78292283 + RMER15 LTR ERVL 282 575 0 4 1205 1346 353 50 46 chr3 81307500 81308010 -78291773 + RMER15-int LTR ERVL 1 520 -4479 4 1205 1612 201 123 24 chr3 81308010 81308393 -78291390 + MTC LTR MaLR 1 421 0 4 1205 1346 353 50 46 chr3 81308393 81308648 -78291135 + RMER15-int LTR ERVL 521 769 -4230 4 1205 262 244 22 0 chr3 81308661 81308751 -78291032 + (TA)n Simple_repeat Simple_repeat 2 93 0 4 1205 2021 281 56 32 chr3 81308817 81309570 -78290213 + RMER15-int LTR ERVL 860 1630 -3369 4 1205 1320 262 22 50 chr3 81309666 81309862 -78289921 + MTD LTR MaLR 1 197 -222 4 1205 213 39 0 0 chr3 81309862 81309888 -78289895 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 4 1205 1320 262 22 50 chr3 81309888 81310053 -78289730 + MTD LTR MaLR 198 352 -67 4 1205 732 308 75 58 chr3 81310057 81310471 -78289312 + RMER15-int LTR ERVL 4564 4984 -15 4 1205 22 35 0 0 chr3 81310475 81310504 -78289279 + AT_rich Low_complexity Low_complexity 1 29 0 4 1205 822 68 0 0 chr3 81312144 81312262 -78287521 + (GAAA)n Simple_repeat Simple_repeat 2 119 0 4 1205 23 78 0 0 chr3 81313181 81313232 -78286551 + AT_rich Low_complexity Low_complexity 1 51 0 4 1205 1232 322 117 45 chr3 81313652 81314478 -78285305 + Lx8 LINE L1 5793 6678 -795 4 1205 243 239 0 0 chr3 81314770 81314837 -78284946 + GA-rich Low_complexity Low_complexity 2 68 0 4 1205 1804 177 51 69 chr3 81315220 81315546 -78284237 - L1_Mur2 LINE L1 -2513 3364 3052 4 1205 738 101 0 0 chr3 81315546 81315655 -78284128 + (TCC)n Simple_repeat Simple_repeat 3 111 0 4 1205 1804 177 51 69 chr3 81315655 81315838 -78283945 - L1_Mur2 LINE L1 -2826 3051 2864 4 1205 25814 148 12 13 chr3 81315831 81321762 -78278021 - L1_Mus4 LINE L1 -1 6635 710 4 1205 1929 162 74 5 chr3 81321785 81322189 -78277594 - L1_Mur2 LINE L1 -2984 2893 2462 4 1205 3598 228 43 6 chr3 81322181 81322974 -78276809 + Lx5 LINE L1 6229 7050 0 4 1205 28 0 0 0 chr3 81322977 81323005 -78276778 + AT_rich Low_complexity Low_complexity 1 28 0 4 1205 452 335 21 24 chr3 81323921 81324086 -78275697 - ID_B1 SINE B4 -48 244 83 4 1205 337 289 94 0 chr3 81324651 81324800 -78274983 - L1MC4 LINE L1 -1097 6945 6783 4 1205 353 246 76 42 chr3 81324899 81325018 -78274765 + MTE2a LTR MaLR 145 267 -112 4 1205 11538 3 0 0 chr3 81326517 81327808 -78271975 + L1Md_A LINE L1 4296 5586 -297 4 1205 9037 1 0 0 chr3 81327809 81328804 -78270979 + L1Md_A LINE L1 5588 6582 0 4 1205 238 260 0 0 chr3 81328851 81328901 -78270882 + (CA)n Simple_repeat Simple_repeat 1 50 0 4 1205 349 284 118 49 chr3 81329691 81329741 -78270042 - MER2 DNA MER2_type -1 344 294 4 1205 4021 121 7 15 chr3 81329741 81330347 -78269436 + MT2B LTR ERVL 1 601 0 4 1205 349 284 118 49 chr3 81330347 81330500 -78269283 - MER2 DNA MER2_type -52 293 127 4 1205 672 145 0 0 chr3 81331419 81331536 -78268247 + (TA)n Simple_repeat Simple_repeat 2 118 0 4 1205 189 269 0 0 chr3 81331605 81331672 -78268111 + (TATG)n Simple_repeat Simple_repeat 1 67 0 4 1205 6698 144 64 2 chr3 81331777 81332911 -78266872 - Lx4A LINE L1 0 7058 5854 4 1205 686 34 11 0 chr3 81333295 81333384 -78266399 + (TC)n Simple_repeat Simple_repeat 1 90 0 4 1205 261 0 0 0 chr3 81333384 81333412 -78266371 + (CCCCCA)n Simple_repeat Simple_repeat 1 29 0 4 1205 374 209 0 0 chr3 81333534 81333610 -78266173 + Lx2B LINE L1 6497 6575 -401 4 1205 232 152 40 108 chr3 81333610 81333684 -78266099 + LTR88b LTR Gypsy? 254 322 -515 4 1205 1204 236 3 101 chr3 81333690 81334076 -78265707 + Lx2B LINE L1 6653 7000 0 4 1205 23 54 0 0 chr3 81334133 81334170 -78265613 + AT_rich Low_complexity Low_complexity 1 37 0 4 1205 222 37 0 0 chr3 81334223 81334250 -78265533 + (TA)n Simple_repeat Simple_repeat 1 27 0 4 1205 225 0 0 0 chr3 81334250 81334274 -78265509 + (CA)n Simple_repeat Simple_repeat 2 26 0 4 1205 21 0 0 0 chr3 81334629 81334650 -78265133 + AT_rich Low_complexity Low_complexity 1 21 0 4 1205 238 213 55 32 chr3 81334711 81334774 -78265009 + PB1D10 SINE Alu 30 96 -53 4 1205 339 325 74 5 chr3 81334851 81335040 -78264743 + L1M3e LINE L1 61 262 -6768 4 1205 331 322 122 67 chr3 81335998 81336611 -78263172 + L1M3e LINE L1 1640 2286 -4822 4 1205 751 342 63 53 chr3 81336622 81337132 -78262651 + Lx8 LINE L1 6955 7469 -4 4 1205 459 82 0 0 chr3 81338774 81338847 -78260936 + (TC)n Simple_repeat Simple_repeat 2 74 0 4 1205 1501 60 0 0 chr3 81340597 81340782 -78259001 - B2_Mm1t SINE B2 -8 185 1 4 1205 318 283 174 0 chr3 81340907 81340999 -78258784 + PB1D10 SINE Alu 2 109 -8 4 1205 1674 175 26 63 chr3 81341052 81341478 -78258305 + RMER17C LTR ERVK 1 410 0 4 1205 269 155 0 17 chr3 81342322 81342381 -78257402 + (TA)n Simple_repeat Simple_repeat 1 58 0 4 1205 503 78 0 13 chr3 81342382 81342460 -78257323 + (CA)n Simple_repeat Simple_repeat 2 78 0 4 1205 1353 295 44 21 chr3 81342482 81342866 -78256917 - Lx5 LINE L1 -75 6975 6583 4 1205 241 266 61 27 chr3 81342888 81343035 -78256748 + L1MC4a LINE L1 7539 7690 -192 4 1205 27 62 0 0 chr3 81343678 81343726 -78256057 + AT_rich Low_complexity Low_complexity 1 48 0 4 1205 213 132 0 0 chr3 81343824 81343862 -78255921 + (TA)n Simple_repeat Simple_repeat 1 38 0 4 1205 784 119 12 0 chr3 81343877 81344045 -78255738 + (TAGA)n Simple_repeat Simple_repeat 2 171 0 4 1205 431 283 35 26 chr3 81344223 81344339 -78255444 + MTC LTR MaLR 295 411 -10 4 1205 21 82 0 0 chr3 81345451 81345500 -78254283 + AT_rich Low_complexity Low_complexity 1 49 0 4 1205 259 294 54 20 chr3 81345945 81346094 -78253689 - ERVL-E-int LTR ERVL -1226 4441 4288 4 1205 466 291 2 48 chr3 81346118 81346271 -78253512 - ERVL-E-int LTR ERVL -2098 3387 3213 4 1205 267 226 10 19 chr3 81346286 81346390 -78253393 + CT-rich Low_complexity Low_complexity 1 103 0 4 1205 388 141 13 0 chr3 81346474 81346552 -78253231 - L1Md_F2 LINE L1 0 6582 6504 4 1205 222 37 0 0 chr3 81346728 81346755 -78253028 + (TG)n Simple_repeat Simple_repeat 2 28 0 4 1205 233 267 142 45 chr3 81346879 81347146 -78252637 - L1M4b LINE L1 -5385 1949 1657 4 1205 21 0 0 0 chr3 81347273 81347294 -78252489 + AT_rich Low_complexity Low_complexity 1 21 0 4 1205 314 61 20 0 chr3 81347742 81347791 -78251992 + (TG)n Simple_repeat Simple_repeat 2 51 0 4 1205 672 13 0 0 chr3 81347859 81347936 -78251847 + (GA)n Simple_repeat Simple_repeat 2 78 0 4 1205 789 319 41 19 chr3 81348492 81348812 -78250971 - Lx8 LINE L1 -236 7237 6911 4 1205 427 276 53 106 chr3 81348825 81349032 -78250751 - B3 SINE B2 -18 198 3 4 1205 702 113 0 0 chr3 81349459 81349565 -78250218 + (TTTC)n Simple_repeat Simple_repeat 2 107 0 4 1205 1558 97 0 5 chr3 81349584 81349802 -78249981 - L1_Mus1 LINE L1 0 6567 6351 4 1205 885 85 0 0 chr3 81349802 81349920 -78249863 + L1_Mus1 LINE L1 6210 6327 -240 4 1205 729 114 0 0 chr3 81350970 81351084 -78248699 + (CA)n Simple_repeat Simple_repeat 2 115 0 4 1205 317 287 161 8 chr3 81352778 81352908 -78246875 + RSINE1 SINE B4 3 152 -13 4 1205 1818 66 15 48 chr3 81353872 81354144 -78245639 - L1_Mus4 LINE L1 -8 6628 6366 4 1205 508 109 6 0 chr3 81354144 81354227 -78245556 + L1_Mus4 LINE L1 5587 5671 -209 4 1205 354 187 0 0 chr3 81355096 81355187 -78244596 + (CA)n Simple_repeat Simple_repeat 2 92 0 4 1205 3866 157 5 19 chr3 81355198 81355867 -78243916 + Lx2B LINE L1 6339 6997 -3 4 1205 320 188 0 0 chr3 81355869 81355938 -78243845 + Lx2 LINE L1 6929 6997 0 4 1205 656 115 9 0 chr3 81356459 81356572 -78243211 + (CATA)n Simple_repeat Simple_repeat 2 115 0 4 1205 261 57 0 0 chr3 81356813 81356848 -78242935 + (CA)n Simple_repeat Simple_repeat 2 36 0 4 1205 3427 68 44 28 chr3 81356860 81357362 -78242421 - L1_Mus1 LINE L1 -344 6223 5714 4 1205 2820 58 3 11 chr3 81357362 81357730 -78242053 + L1_Mus1 LINE L1 6203 6567 0 4 1205 485 279 68 31 chr3 81358791 81359013 -78240770 + BLACKJACK DNA AcHobo 736 965 -1979 4 1205 308 308 30 30 chr3 81359058 81359222 -78240561 + BLACKJACK DNA AcHobo 1115 1278 -1666 4 1205 322 291 14 29 chr3 81359491 81359629 -78240154 + L1MA6 LINE L1 6007 6142 -158 4 1205 441 36 0 0 chr3 81359712 81359767 -78240016 + (GTTTG)n Simple_repeat Simple_repeat 5 59 0 4 1205 2011 306 54 26 chr3 81360841 81361661 -78238122 + Lx9 LINE L1 6106 7047 -597 4 1205 183 80 0 0 chr3 81361759 81361784 -78237999 + (CATG)n Simple_repeat Simple_repeat 3 27 0 4 1205 374 241 120 0 chr3 81361791 81361924 -78237859 + Lx9 LINE L1 7419 7567 -77 4 1205 3360 108 24 4 chr3 81362004 81362545 -78237238 - MusHAL1 LINE L1 -395 2317 1766 4 1205 7619 121 9 1 chr3 81362544 81364096 -78235687 + L1_Mus3 LINE L1 5068 6637 -1 4 1205 372 43 0 0 chr3 81364110 81364156 -78235627 + (TAGA)n Simple_repeat Simple_repeat 1 46 0 4 1205 247 167 38 25 chr3 81364189 81364269 -78235514 + (TTATA)n Simple_repeat Simple_repeat 5 85 0 4 1205 577 285 157 38 chr3 81364377 81364906 -78234877 + BLACKJACK DNA AcHobo 1935 2526 -418 4 1205 543 133 0 0 chr3 81365184 81365289 -78234494 + (TAGA)n Simple_repeat Simple_repeat 2 106 0 4 1205 325 343 58 12 chr3 81365892 81366063 -78233720 - B3A SINE B2 -18 180 2 4 1205 911 298 52 27 chr3 81366073 81366573 -78233210 - L1M2 LINE L1 -1954 3926 3411 5 1205 189 107 0 0 chr3 81368053 81368081 -78231702 + (TTTTTG)n Simple_repeat Simple_repeat 2 29 0 5 1205 1512 208 52 54 chr3 81370035 81370497 -78229286 - L1_Mur3 LINE L1 -1321 4559 4099 5 1205 5435 227 55 98 chr3 81370507 81370704 -78229079 - L1_Mur3 LINE L1 -2604 3276 3049 5 1205 261 0 0 0 chr3 81370704 81370733 -78229050 + (TTG)n Simple_repeat Simple_repeat 2 30 0 5 1205 5435 227 55 98 chr3 81370733 81371136 -78228647 - L1_Mur3 LINE L1 -2832 3048 2658 5 1205 2065 102 39 71 chr3 81371136 81371474 -78228309 - ORR1A2 LTR MaLR 0 327 1 5 1205 5435 227 55 98 chr3 81371474 81372068 -78227715 - L1_Mur3 LINE L1 -3223 2657 2194 5 1205 1024 71 21 0 chr3 81372068 81372208 -78227575 - B1_Mus2 SINE Alu 0 147 5 5 1205 5435 227 55 98 chr3 81372208 81372340 -78227443 - L1_Mur3 LINE L1 -3687 2193 2072 5 1205 423 0 0 0 chr3 81372340 81372387 -78227396 + (TG)n Simple_repeat Simple_repeat 2 48 0 5 1205 5435 227 55 98 chr3 81372387 81373196 -78226587 - L1_Mur3 LINE L1 -3809 2071 1229 5 1205 213 65 0 0 chr3 81373214 81373245 -78226538 + (TTTG)n Simple_repeat Simple_repeat 1 31 0 5 1205 225 0 0 0 chr3 81373247 81373272 -78226511 + (T)n Simple_repeat Simple_repeat 1 25 0 5 1205 703 34 0 11 chr3 81373280 81373369 -78226414 - B1_Mm SINE Alu -1 146 59 5 1205 1334 252 11 11 chr3 81373405 81373778 -78226005 - L1_Mur3 LINE L1 -6528 1200 828 5 1205 240 35 0 0 chr3 81374770 81374799 -78224984 + (GA)n Simple_repeat Simple_repeat 1 29 0 5 1205 296 266 24 0 chr3 81374826 81374950 -78224833 + Lx9 LINE L1 7517 7643 -1 5 1205 303 330 37 55 chr3 81374979 81375088 -78224695 + PB1 SINE Alu 5 111 -16 5 1205 23 0 0 0 chr3 81375423 81375446 -78224337 + AT_rich Low_complexity Low_complexity 1 23 0 5 1205 5260 137 3 17 chr3 81375458 81376326 -78223457 - Lx3B LINE L1 0 6973 6118 5 1205 3083 133 11 67 chr3 81376326 81376891 -78222892 + Lx3B LINE L1 5592 6124 -849 5 1205 38 81 0 0 chr3 81377036 81377123 -78222660 + AT_rich Low_complexity Low_complexity 1 87 0 5 1205 426 294 32 83 chr3 81377504 81377660 -78222123 + B3A SINE B2 5 152 -46 5 1205 315 0 0 0 chr3 81377665 81377700 -78222083 + (CA)n Simple_repeat Simple_repeat 2 36 0 5 1205 360 64 0 0 chr3 81377853 81377900 -78221883 + (TTA)n Simple_repeat Simple_repeat 2 48 0 5 1205 335 396 24 30 chr3 81378323 81378487 -78221296 - RSINE1 SINE B4 0 165 3 5 1205 4082 267 35 8 chr3 81378513 81379517 -78220266 - Lx6 LINE L1 -1 7459 6429 5 1205 722 278 24 6 chr3 81380568 81380738 -78219045 + B4A SINE B4 116 288 -4 5 1205 26 0 0 0 chr3 81380946 81380972 -78218811 + AT_rich Low_complexity Low_complexity 1 26 0 5 1205 234 295 181 50 chr3 81381077 81381097 -78218686 - Lx9 LINE L1 -165 7479 7460 5 1205 468 35 0 0 chr3 81381097 81381155 -78218628 + (CA)n Simple_repeat Simple_repeat 1 58 0 5 1205 234 295 181 50 chr3 81381155 81381316 -78218467 - Lx9 LINE L1 -185 7459 7276 5 1205 1281 16 16 20 chr3 81381317 81381562 -78218221 + (TTTC)n Simple_repeat Simple_repeat 1 243 0 5 1205 1166 63 0 0 chr3 81381562 81381704 -78218079 - B1_Mus1 SINE Alu -5 143 2 5 1205 1901 317 29 41 chr3 81381763 81382209 -78217574 - Lx9 LINE L1 -470 7174 6734 5 1205 1023 109 0 0 chr3 81382209 81382347 -78217436 - B1_Mm SINE Alu -9 138 1 5 1205 1901 317 29 41 chr3 81382347 81382722 -78217061 - Lx9 LINE L1 -911 6733 6364 5 1205 444 19 0 0 chr3 81382744 81382797 -78216986 + (TG)n Simple_repeat Simple_repeat 2 54 0 5 1205 207 0 0 0 chr3 81382877 81382900 -78216883 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 5 1205 415 247 194 12 chr3 81382953 81383195 -78216588 + Lx9 LINE L1 5741 6026 -1618 5 1205 390 254 43 9 chr3 81383395 81383510 -78216273 + RMER15-int LTR ERVL 733 851 -4148 5 1205 2772 322 70 32 chr3 81383521 81384819 -78214964 + RMER15-int LTR ERVL 757 2104 -2895 5 1205 256 241 17 0 chr3 81385031 81385089 -78214694 + Lx8 LINE L1 6192 6250 -1223 5 1205 737 256 132 57 chr3 81385388 81385773 -78214010 + RMER15-int LTR ERVL 4560 4973 -26 5 1205 332 258 50 165 chr3 81385789 81385989 -78213794 + RMER15 LTR ERVL 17 193 -382 5 1205 498 278 56 0 chr3 81386056 81386200 -78213583 + RMER15 LTR ERVL 424 575 0 5 1205 308 257 98 52 chr3 81386666 81386692 -78213091 - L1MA7 LINE L1 -6 6285 6257 5 1205 405 0 0 0 chr3 81386692 81386737 -78213046 + (TG)n Simple_repeat Simple_repeat 2 46 0 5 1205 308 257 98 52 chr3 81386737 81386791 -78212992 - L1MA7 LINE L1 -35 6256 6211 5 1205 1850 121 60 32 chr3 81386791 81387107 -78212676 - ORR1A2 LTR MaLR -2 325 1 5 1205 308 257 98 52 chr3 81387107 81387218 -78212565 - L1MA7 LINE L1 -81 6210 6085 5 1205 921 208 65 9 chr3 81388486 81388700 -78211083 + URR1A DNA MER1_type 1 226 0 5 1205 362 315 39 29 chr3 81388919 81389125 -78210658 + B3 SINE B2 4 211 -5 5 1205 1435 176 74 77 chr3 81390978 81391328 -78208455 + ORR1B1 LTR MaLR 41 389 -5 5 1205 522 31 0 0 chr3 81391767 81391831 -78207952 + (TG)n Simple_repeat Simple_repeat 1 64 0 5 1205 1725 259 89 34 chr3 81391979 81392633 -78207150 + RMER6C LTR ERVK 1 690 0 5 1205 26 30 0 0 chr3 81394366 81394399 -78205384 + AT_rich Low_complexity Low_complexity 1 33 0 5 1205 813 340 53 8 chr3 81394496 81394968 -78204815 - L1M2 LINE L1 -3162 2981 2489 5 1205 776 265 114 56 chr3 81394975 81395440 -78204343 + BGLII_B LTR ERVK 1 481 -211 5 150 361 299 77 94 chr3 81395481 81395832 -78203951 - L1M2 LINE L1 -3664 2479 2135 5 1206 911 157 6 6 chr3 81397713 81397880 -78201903 - Lx LINE L1 -8 6646 6480 5 1206 7609 70 2 7 chr3 81397987 81399092 -78200691 - L1Md_F2 LINE L1 -1 6581 5483 5 1206 7796 61 3 2 chr3 81399095 81400182 -78199601 - L1Md_F3 LINE L1 -14 6570 5483 5 1206 33095 80 4 4 chr3 81400185 81404793 -78194990 - L1Md_F3 LINE L1 -14 6570 1978 5 1206 317 59 39 0 chr3 81404793 81404844 -78194939 + (TTTG)n Simple_repeat Simple_repeat 3 55 0 5 1206 33095 99 38 3 chr3 81404844 81406189 -78193594 - L1Md_F3 LINE L1 -3906 1977 564 5 1206 249 210 0 0 chr3 81406230 81406292 -78193491 + (TA)n Simple_repeat Simple_repeat 1 62 0 5 1206 208 310 0 0 chr3 81406297 81406355 -78193428 + (TATG)n Simple_repeat Simple_repeat 2 59 0 5 1206 1819 288 32 8 chr3 81406468 81407098 -78192685 - Lx6 LINE L1 -26 7434 6455 5 1206 4038 252 52 11 chr3 81407099 81408583 -78191200 + Lx6 LINE L1 4945 6715 -745 5 1206 253 163 0 0 chr3 81411612 81411655 -78188128 + MTC LTR MaLR 335 377 -44 5 1206 25 0 0 0 chr3 81411688 81411713 -78188070 + AT_rich Low_complexity Low_complexity 1 25 0 5 1206 227 315 0 0 chr3 81412328 81412382 -78187401 - ID4 SINE ID -26 57 4 5 1206 596 314 66 91 chr3 81412756 81413106 -78186677 + MLT1A LTR MaLR 5 345 -29 5 1206 319 343 10 10 chr3 81413886 81413985 -78185798 - RMER30 DNA MER1_type 0 202 104 5 1206 645 289 0 13 chr3 81413985 81414139 -78185644 + ID_B1 SINE B4 1 152 -72 5 1206 1964 197 59 41 chr3 81414179 81414619 -78185164 - Lx7 LINE L1 -770 6926 6479 5 1206 1956 218 74 102 chr3 81414680 81415344 -78184439 + Lx7 LINE L1 7052 7696 0 5 1206 191 114 0 28 chr3 81415536 81415572 -78184211 + (TTA)n Simple_repeat Simple_repeat 3 37 0 5 1206 883 270 153 28 chr3 81416320 81416647 -78183136 + MTE2b LTR MaLR 10 377 -2 5 1206 253 324 0 14 chr3 81416647 81416719 -78183064 + polypurine Low_complexity Low_complexity 4 74 0 5 1206 922 62 6 137 chr3 81418771 81418939 -78180844 + B1_Mm SINE Alu 2 147 0 5 1206 1736 132 128 3 chr3 81419169 81419322 -78180461 - RLTR9A LTR ERVK 0 368 201 5 1206 234 0 0 0 chr3 81419322 81419348 -78180435 + (CA)n Simple_repeat Simple_repeat 1 26 0 5 1206 1736 132 128 3 chr3 81419348 81419521 -78180262 - RLTR9A LTR ERVK -168 200 3 5 1206 21 82 0 0 chr3 81420130 81420179 -78179604 + AT_rich Low_complexity Low_complexity 1 49 0 5 1206 35481 34 0 0 chr3 81420351 81425810 -78173973 + L1Md_T LINE L1 34 5589 -297 5 1206 9005 4 0 0 chr3 81425810 81426834 -78172949 + L1Md_T LINE L1 5590 6585 0 5 1206 499 291 81 5 chr3 81427015 81427212 -78172571 - B3 SINE B2 -1 215 4 5 1206 2314 259 118 40 chr3 81427582 81428465 -78171318 + RCHARR1 DNA MER1_type 22 973 -1 5 1206 5203 205 41 59 chr3 81430846 81430895 -78168888 + Lx5 LINE L1 5854 5902 -1148 5 1206 1671 78 11 89 chr3 81430895 81431176 -78168607 + L1_Mus2 LINE L1 6308 6566 0 5 1206 5203 205 41 59 chr3 81431176 81432345 -78167438 + Lx5 LINE L1 5903 7050 0 5 1206 302 338 0 13 chr3 81434756 81434834 -78164949 - PB1 SINE Alu -30 97 21 5 1206 234 0 0 0 chr3 81435104 81435130 -78164653 + (TG)n Simple_repeat Simple_repeat 2 27 0 5 1206 234 0 0 0 chr3 81435171 81435197 -78164586 + (TG)n Simple_repeat Simple_repeat 2 27 0 5 1206 417 20 0 0 chr3 81435238 81435288 -78164495 + (TG)n Simple_repeat Simple_repeat 2 51 0 5 1206 282 375 29 15 chr3 81436213 81436363 -78163420 - MIRc SINE MIR -116 160 4 5 1206 737 292 63 3 chr3 81437195 81437495 -78162288 - Lx8 LINE L1 -1560 5913 5564 5 1206 310 309 83 0 chr3 81437504 81437588 -78162195 - B3A SINE B2 -28 170 80 5 1206 1011 294 149 39 chr3 81437663 81438412 -78161371 - Lx8 LINE L1 -306 5571 4749 5 1206 378 61 0 0 chr3 81438412 81438461 -78161322 + (CAT)n Simple_repeat Simple_repeat 3 51 0 5 1206 1011 282 158 38 chr3 81438461 81438821 -78160962 - Lx8 LINE L1 -1132 4748 4360 5 1206 450 0 0 0 chr3 81438821 81438871 -78160912 + (TG)n Simple_repeat Simple_repeat 2 51 0 5 1206 1011 282 158 38 chr3 81438871 81439162 -78160621 - Lx8 LINE L1 -1521 4359 4004 5 1206 1137 112 11 0 chr3 81440285 81440473 -78159310 - Lx3_Mus LINE L1 0 7009 6820 5 1206 2779 92 0 28 chr3 81440473 81440866 -78158917 - Lx3_Mus LINE L1 -308 6701 6320 5 1206 4496 101 16 27 chr3 81440865 81441229 -78158554 + Lx3_Mus LINE L1 5629 5985 -1024 5 1206 6691 46 42 1 chr3 81441229 81442071 -78157712 + L1Md_F2 LINE L1 5695 6570 -12 5 1206 4496 101 16 27 chr3 81442071 81442408 -78157375 + Lx3_Mus LINE L1 5986 6322 -687 5 1206 248 276 54 65 chr3 81444238 81444331 -78155452 + PB1D7 SINE Alu 29 120 0 5 1206 799 174 44 53 chr3 81444364 81444570 -78155213 + Lx5 LINE L1 6847 7050 0 5 1206 449 316 90 17 chr3 81445671 81445848 -78153935 - B3A SINE B2 -8 190 1 5 1206 7457 85 3 5 chr3 81446575 81447931 -78151852 - L1Md_F2 LINE L1 0 6582 5291 5 1206 3616 94 0 8 chr3 81447931 81448443 -78151340 - L1Md_F2 LINE L1 0 6582 6075 5 1206 14753 81 3 5 chr3 81448443 81450581 -78149202 - L1Md_F2 LINE L1 -2566 3317 1182 5 1206 185 0 40 0 chr3 81450581 81450606 -78149177 + (TTTG)n Simple_repeat Simple_repeat 1 26 0 5 1206 5032 116 43 23 chr3 81450606 81451365 -78148418 - L1Md_F2 LINE L1 -5435 1181 410 5 1206 223 298 12 12 chr3 81451518 81451603 -78148180 + (TA)n Simple_repeat Simple_repeat 1 85 0 5 1206 201 158 0 0 chr3 81452069 81452107 -78147676 + T-rich Low_complexity Low_complexity 3 40 0 5 1206 286 299 86 16 chr3 81452524 81452711 -78147072 - L1M5 LINE L1 -2094 4052 3853 5 1206 1657 189 9 135 chr3 81453281 81453704 -78146079 + ORR1C1 LTR MaLR 9 378 0 5 1206 399 98 0 0 chr3 81453776 81453837 -78145946 + (TG)n Simple_repeat Simple_repeat 1 61 0 5 1206 530 304 20 132 chr3 81453845 81454148 -78145635 - B4A SINE B4 0 292 24 5 1206 7806 5 1 0 chr3 81454148 81455024 -78144759 + L1Md_A LINE L1 4710 5586 -297 5 1206 8975 2 1 0 chr3 81455024 81456018 -78143765 + L1Md_A LINE L1 5587 6581 -1 5 1206 24 32 0 0 chr3 81456018 81456049 -78143734 + AT_rich Low_complexity Low_complexity 1 31 0 5 1206 3015 3 0 0 chr3 81456049 81456384 -78143399 + L1Md_A LINE L1 5252 5586 -297 5 1206 9026 2 0 0 chr3 81456384 81457380 -78142403 + L1Md_A LINE L1 5587 6582 0 5 1206 306 306 66 67 chr3 81457568 81457922 -78141861 - L1_Mur3 LINE L1 -2407 3736 3385 5 1206 1131 108 0 0 chr3 81458438 81458707 -78141076 + (TC)n Simple_repeat Simple_repeat 1 269 0 5 1206 23 33 0 0 chr3 81458884 81458914 -78140869 + AT_rich Low_complexity Low_complexity 1 30 0 6 1206 815 36 0 0 chr3 81459020 81459132 -78140651 - L1Md_A LINE L1 0 6582 6471 6 1206 3405 140 34 12 chr3 81459153 81459740 -78140043 - Lx3C LINE L1 -2 6974 6375 6 1206 4545 120 13 60 chr3 81459741 81460688 -78139095 + Lx3C LINE L1 5062 5953 -1023 6 1206 441 0 0 0 chr3 81462338 81462387 -78137396 + (TA)n Simple_repeat Simple_repeat 1 49 0 6 1206 336 326 183 34 chr3 81464040 81464335 -78135448 + MER2 DNA MER2_type 7 345 0 6 1206 251 114 0 22 chr3 81465028 81465073 -78134710 + (GA)n Simple_repeat Simple_repeat 2 45 0 6 1206 306 73 0 0 chr3 81468276 81468317 -78131466 + (TAA)n Simple_repeat Simple_repeat 2 42 0 6 1206 260 311 75 59 chr3 81469093 81469217 -78130566 - MLT1B LTR MaLR -71 337 214 6 1206 256 162 38 57 chr3 81469443 81469548 -78130235 + (TAA)n Simple_repeat Simple_repeat 3 105 0 6 1206 205 171 0 0 chr3 81470154 81470195 -78129588 + (CAA)n Simple_repeat Simple_repeat 2 42 0 6 1206 572 0 15 0 chr3 81470652 81470720 -78129063 + (TA)n Simple_repeat Simple_repeat 1 69 0 6 1206 675 284 20 55 chr3 81470791 81470992 -78128791 + B3A SINE B2 5 198 0 6 1206 228 289 51 26 chr3 81471744 81471822 -78127961 + MLT1I LTR MaLR 61 140 -271 6 1206 387 105 0 0 chr3 81471999 81472056 -78127727 + (T)n Simple_repeat Simple_repeat 1 57 0 6 1206 3138 134 104 5 chr3 81472056 81472672 -78127111 - L1_Mur2 LINE L1 -2995 2882 2206 6 1206 1924 48 16 4 chr3 81472673 81472923 -78126860 - L1Md_F2 LINE L1 -1 6581 6329 6 1206 2039 49 60 8 chr3 81472923 81473191 -78126592 + L1Md_F2 LINE L1 6048 6329 -253 6 1206 1157 68 0 0 chr3 81473703 81473850 -78125933 + B1_Mus1 SINE Alu 1 147 -1 6 1206 228 335 113 25 chr3 81474089 81474248 -78125535 - MER121 Unknown Unknown -205 207 35 6 1206 180 0 0 0 chr3 81474477 81474497 -78125286 + (TAA)n Simple_repeat Simple_repeat 2 21 0 6 1206 562 350 29 32 chr3 81474515 81474831 -78124952 - MER119 DNA MER1_type -3 580 266 6 1206 600 351 51 24 chr3 81475367 81475662 -78124121 + Lx8 LINE L1 6960 7262 -211 6 1206 661 341 82 22 chr3 81476606 81477070 -78122713 - MLT1F-int LTR MaLR -813 676 185 6 1206 346 350 64 23 chr3 81477235 81477454 -78122329 + LTR80B LTR ERVL 109 336 -248 6 1206 490 243 162 65 chr3 81477455 81477717 -78122066 + MLT1A0 LTR MaLR 1 285 -80 6 1206 25 0 0 0 chr3 81478431 81478456 -78121327 + AT_rich Low_complexity Low_complexity 1 25 0 6 1206 195 42 0 0 chr3 81478857 81478881 -78120902 + (TTTTG)n Simple_repeat Simple_repeat 3 26 0 6 1206 621 278 77 58 chr3 81479992 81480284 -78119499 - ORR1D2 LTR MaLR -31 328 6 6 1206 498 356 89 0 chr3 81481063 81481265 -78118518 - ID_B1 SINE B4 -4 220 1 6 1206 207 169 13 53 chr3 81481315 81481390 -78118393 + (TAAA)n Simple_repeat Simple_repeat 4 75 0 6 1206 6643 191 56 27 chr3 81481394 81482685 -78117098 - Lx4B LINE L1 -9 7049 5718 6 1206 2253 97 78 3 chr3 81482685 81483017 -78116766 + IAPEY2_LTR LTR ERVK 1 357 0 6 1206 6643 177 16 14 chr3 81483017 81483704 -78116079 - Lx4B LINE L1 -1341 5717 5021 6 1206 2620 167 13 47 chr3 81483704 81484232 -78115551 + RLTR31_Mm LTR ERVK 1 510 -51 6 1206 366 235 38 98 chr3 81484243 81484447 -78115336 + RLTR17 LTR ERVK 349 614 -78 6 1206 18816 158 30 9 chr3 81484492 81488089 -78111694 - Lx4B LINE L1 -881 4996 1326 6 1206 735 234 3 4 chr3 81488081 81488291 -78111492 - Lx4B LINE L1 -5561 1096 888 6 1206 22 0 0 0 chr3 81488577 81488599 -78111184 + AT_rich Low_complexity Low_complexity 1 22 0 6 1206 1031 192 22 35 chr3 81488819 81489046 -78110737 - URR1B DNA MER1_type -1 224 1 6 1206 239 351 70 70 chr3 81489770 81490012 -78109771 - MLT1-int LTR MaLR -75 1296 1055 6 1206 371 304 100 17 chr3 81490038 81490269 -78109514 + MLT1-int LTR MaLR 231 480 -891 6 1206 238 326 20 10 chr3 81490675 81490774 -78109009 - B2_Mm1t SINE B2 -92 101 2 6 1206 21 82 0 0 chr3 81491589 81491638 -78108145 + AT_rich Low_complexity Low_complexity 1 49 0 6 1206 477 241 0 0 chr3 81492233 81492320 -78107463 - B2_Mm2 SINE B2 -108 87 1 6 1206 23 33 0 0 chr3 81492705 81492735 -78107048 + AT_rich Low_complexity Low_complexity 1 30 0 6 1206 35387 35 0 0 chr3 81493480 81498728 -78101055 + L1Md_T LINE L1 245 5589 -297 6 1206 8860 12 0 0 chr3 81498728 81499724 -78100059 + L1Md_T LINE L1 5590 6585 0 6 1206 470 266 111 92 chr3 81499739 81500000 -78099783 + Lx6 LINE L1 6979 7244 -216 6 1206 601 239 51 51 chr3 81500000 81500216 -78099567 + Lx6 LINE L1 7245 7460 0 1 1206 568 113 144 0 chr3 81500941 81501050 -78098733 + Lx2 LINE L1 6332 6457 -540 2 1206 315 288 38 131 chr3 81501227 81501387 -78098396 - MER20 DNA MER1_type -1 218 74 3 1206 554 164 9 46 chr3 81501372 81501481 -78098302 - RMER6D LTR ERVK -16 704 600 4 1206 195 42 0 0 chr3 81501795 81501819 -78097964 + (A)n Simple_repeat Simple_repeat 1 24 0 5 1206 23 54 0 0 chr3 81502217 81502254 -78097529 + AT_rich Low_complexity Low_complexity 1 37 0 6 1206 545 28 14 0 chr3 81502256 81502327 -78097456 + (TG)n Simple_repeat Simple_repeat 2 73 0 7 1206 514 284 63 0 chr3 81502342 81502469 -78097314 - RSINE1 SINE B4 -19 146 12 8 1206 1503 179 81 0 chr3 81502469 81502776 -78097007 - Lx LINE L1 -2 7056 6725 9 1206 3269 141 7 11 chr3 81502772 81503383 -78096400 + Lx4A LINE L1 5531 6145 -913 1 1206 697 11 22 0 chr3 81506644 81506734 -78093049 + (TTTC)n Simple_repeat Simple_repeat 2 93 0 1 1206 742 308 53 30 chr3 81506884 81507185 -78092598 - Lx5 LINE L1 -50 7000 6693 1 1206 1664 181 15 24 chr3 81507233 81507255 -78092528 - Lx LINE L1 -13 6641 6620 9 1206 4286 132 43 18 chr3 81507255 81508044 -78091739 - RMER17D2 LTR ERVK 0 809 1 1 1206 1664 181 15 24 chr3 81508044 81508360 -78091423 - Lx LINE L1 -35 6619 6307 9 1206 1757 96 0 0 chr3 81508364 81508645 -78091138 + MusHAL1 LINE L1 1941 2221 -491 1 1206 4983 126 27 16 chr3 81508636 81509497 -78090286 + L1_Mur2 LINE L1 3740 4609 -1268 1 1206 23 0 0 0 chr3 81509497 81509520 -78090263 + AT_rich Low_complexity Low_complexity 1 23 0 1 1206 36270 30 1 1 chr3 81509525 81516314 -78083469 - L1Md_T LINE L1 -3 6582 1 1 1206 3982 180 50 5 chr3 81516310 81516447 -78083336 + L1_Mur2 LINE L1 4592 4725 -1152 1 1206 207 0 0 0 chr3 81516447 81516470 -78083313 + (CAAAA)n Simple_repeat Simple_repeat 1 23 0 1 1206 3982 180 50 5 chr3 81516470 81517208 -78082575 + L1_Mur2 LINE L1 4726 5506 -371 1 1206 3203 242 71 84 chr3 81517189 81517447 -78082336 - Lx5 LINE L1 -342 6708 6453 1 1206 272 27 27 0 chr3 81517447 81517484 -78082299 + (TTTTG)n Simple_repeat Simple_repeat 1 38 0 2 1206 5921 206 33 67 chr3 81517484 81519534 -78080249 - Lx5 LINE L1 -598 6452 4469 1 1206 4429 184 70 64 chr3 81519530 81520844 -78078939 + L1_Mur2 LINE L1 2385 3706 -2171 2 1206 363 361 13 6 chr3 81521468 81521627 -78078156 - B4A SINE B4 -6 286 127 2 1206 3008 48 0 0 chr3 81521846 81522200 -78077583 - IAPEY2_LTR LTR ERVK -3 354 1 2 1206 330 80 0 0 chr3 81522452 81522502 -78077281 + (TTTTTG)n Simple_repeat Simple_repeat 1 50 0 2 1206 501 17 0 0 chr3 81524187 81524245 -78075538 + (TC)n Simple_repeat Simple_repeat 1 58 0 2 1206 2521 190 6 0 chr3 81524379 81524859 -78074924 + L1_Mur1 LINE L1 5397 5879 -7 2 1206 1784 227 72 13 chr3 81524853 81525322 -78074461 + Lx2B LINE L1 6498 6994 -6 2 1206 440 374 86 21 chr3 81525830 81526109 -78073674 - MLT1F2 LTR MaLR -259 301 5 2 1206 2317 169 74 45 chr3 81526152 81526665 -78073118 + RLTR11A LTR ERVK 1 528 0 2 1207 306 132 0 0 chr3 81527390 81527443 -78072340 + (TG)n Simple_repeat Simple_repeat 2 54 0 3 1207 776 116 101 13 chr3 81527741 81527864 -78071919 - Lx LINE L1 0 6654 6532 3 1207 2802 52 6 0 chr3 81527864 81528208 -78071575 + ORR1A1 LTR MaLR 1 346 0 3 1207 776 116 101 13 chr3 81528208 81528233 -78071550 - Lx LINE L1 -123 6531 6493 3 1207 198 103 0 0 chr3 81528389 81528418 -78071365 + (GAAA)n Simple_repeat Simple_repeat 4 32 0 3 1207 314 303 40 0 chr3 81529009 81529108 -78070675 + L1M5 LINE L1 2437 2539 -3607 3 1207 1207 62 0 0 chr3 81529211 81529357 -78070426 - B1_Mus1 SINE Alu 0 148 3 3 1207 241 264 138 6 chr3 81530914 81530977 -78068806 - L1MA5 LINE L1 -369 5931 5858 3 1207 1047 59 0 0 chr3 81530977 81531112 -78068671 + (TC)n Simple_repeat Simple_repeat 2 136 0 3 1207 241 264 138 6 chr3 81531112 81531208 -78068575 - L1MA5 LINE L1 -443 5857 5752 3 1207 8474 32 0 0 chr3 81531828 81532823 -78066960 + L1Md_T LINE L1 5588 6582 0 3 1207 186 283 0 42 chr3 81532965 81533013 -78066770 - L4 LINE RTE -853 1176 1131 3 1207 259 397 48 24 chr3 81533440 81533649 -78066134 + LTR16B1 LTR ERVL 6 219 -261 4 1207 388 316 51 25 chr3 81533639 81533821 -78065962 + MLT1E1 LTR MaLR 379 651 -3 4 1207 523 68 11 22 chr3 81534757 81534847 -78064936 + (CAAAA)n Simple_repeat Simple_repeat 2 90 0 4 1207 21 36 0 0 chr3 81535054 81535082 -78064701 + AT_rich Low_complexity Low_complexity 1 28 0 4 1207 1199 124 8 104 chr3 81535203 81535463 -78064320 + Lx3C LINE L1 6742 6976 0 4 1207 306 363 19 19 chr3 81535514 81535730 -78064053 - Lx8 LINE L1 -155 7318 7103 4 1207 303 216 0 13 chr3 81536971 81537046 -78062737 + L1MA8 LINE L1 5341 5414 -886 4 1207 300 290 48 8 chr3 81537231 81537356 -78062427 + L1MA8 LINE L1 5636 5765 -535 4 1207 327 233 0 0 chr3 81537442 81537545 -78062238 + (CAGA)n Simple_repeat Simple_repeat 4 106 0 4 1207 614 265 46 49 chr3 81537560 81537905 -78061878 + L1MA8 LINE L1 5948 6291 0 4 1207 298 282 51 0 chr3 81538157 81538235 -78061548 + B3A SINE B2 93 174 -24 4 1207 477 0 0 0 chr3 81538240 81538293 -78061490 + (CA)n Simple_repeat Simple_repeat 2 54 0 4 1207 283 268 14 0 chr3 81540321 81540392 -78059391 + ID4_ SINE ID 2 73 -10 5 1207 305 255 93 13 chr3 81541298 81541449 -78058334 + L1MA6 LINE L1 6120 6282 -18 5 1207 1633 201 46 15 chr3 81541848 81542176 -78057607 - ORR1B1 LTR MaLR -16 378 41 5 1207 309 254 117 17 chr3 81543352 81543472 -78056311 + HAL1-3A_ME LINE L1 2276 2407 -451 5 1207 1914 125 84 3 chr3 81543560 81543880 -78055903 - ORR1A1 LTR MaLR 0 346 1 5 1207 369 0 0 0 chr3 81544124 81544165 -78055618 + (TG)n Simple_repeat Simple_repeat 2 42 0 5 1207 24 32 0 0 chr3 81545290 81545321 -78054462 + AT_rich Low_complexity Low_complexity 1 31 0 5 1207 197 65 0 31 chr3 81545904 81545936 -78053847 + (TCTCCC)n Simple_repeat Simple_repeat 6 36 0 5 1207 210 143 0 0 chr3 81545957 81545992 -78053791 + (TTTCC)n Simple_repeat Simple_repeat 2 36 0 5 1207 212 214 60 0 chr3 81547001 81547085 -78052698 + (TA)n Simple_repeat Simple_repeat 2 90 0 5 1207 405 373 11 51 chr3 81547167 81547345 -78052438 + B4A SINE B4 99 269 -23 6 1207 413 81 16 0 chr3 81547355 81547417 -78052366 + (CA)n Simple_repeat Simple_repeat 1 63 0 6 1207 527 306 35 0 chr3 81547480 81547653 -78052130 + B3A SINE B2 4 182 -16 6 1207 312 137 0 0 chr3 81548593 81548644 -78051139 + (TA)n Simple_repeat Simple_repeat 2 52 0 6 1207 345 230 40 13 chr3 81548964 81549039 -78050744 - B4A SINE B4 -6 286 210 6 1207 424 281 66 0 chr3 81549708 81549829 -78049954 + RSINE1 SINE B4 4 132 -33 6 1207 428 262 33 60 chr3 81550290 81550440 -78049343 + B1F1 SINE Alu 1 146 -3 6 1207 445 276 17 8 chr3 81550506 81550623 -78049160 + ID_B1 SINE B4 99 216 -8 6 1207 266 266 89 0 chr3 81550873 81550952 -78048831 + PB1D10 SINE Alu 30 115 -2 6 1207 227 189 0 0 chr3 81551309 81551362 -78048421 + A-rich Low_complexity Low_complexity 1 53 0 6 1207 2041 237 59 52 chr3 81552358 81552914 -78046869 - RMER15 LTR ERVL 0 575 16 7 1207 22 35 0 0 chr3 81553109 81553138 -78046645 + AT_rich Low_complexity Low_complexity 1 29 0 7 1207 230 290 0 0 chr3 81553458 81553527 -78046256 + GA-rich Low_complexity Low_complexity 1 69 0 7 1207 283 271 135 0 chr3 81557010 81557106 -78042677 - PB1D10 SINE Alu -8 109 1 7 1207 244 393 0 99 chr3 81557119 81557280 -78042503 - MIRb SINE MIR -17 251 107 7 1207 230 274 69 35 chr3 81558218 81558305 -78041478 - Cheshire DNA MER1_type -2143 277 188 7 1207 246 32 0 0 chr3 81559602 81559633 -78040150 + (TTATA)n Simple_repeat Simple_repeat 4 34 0 7 1207 186 341 156 14 chr3 81559738 81559949 -78039834 - MIR SINE MIR -1 261 21 7 1207 243 0 0 0 chr3 81560823 81560850 -78038933 + (CAAAA)n Simple_repeat Simple_repeat 5 31 0 7 1207 547 88 22 0 chr3 81561870 81561961 -78037822 + (TA)n Simple_repeat Simple_repeat 1 93 0 7 1207 235 241 0 0 chr3 81562102 81562156 -78037627 + L1MA9 LINE L1 5850 5903 -397 8 1207 702 273 86 26 chr3 81562216 81562483 -78037300 + L1MA9 LINE L1 6029 6311 -1 8 1207 2236 289 74 78 chr3 81563353 81564599 -78035184 + Lx6 LINE L1 5919 7440 -20 8 1207 645 25 0 0 chr3 81565673 81565752 -78034031 + (TC)n Simple_repeat Simple_repeat 2 80 0 8 1207 435 19 0 0 chr3 81565752 81565803 -78033980 + (TG)n Simple_repeat Simple_repeat 1 52 0 8 1207 741 275 19 0 chr3 81565804 81565964 -78033819 - B3A SINE B2 -34 164 2 8 1207 36 23 0 0 chr3 81565985 81566028 -78033755 + AT_rich Low_complexity Low_complexity 1 43 0 8 1207 395 338 13 33 chr3 81566088 81566238 -78033545 - B1F SINE Alu 0 149 3 8 1207 480 225 0 8 chr3 81567183 81567313 -78032470 - Lx9 LINE L1 -24 7620 7492 8 1207 3049 54 5 0 chr3 81567397 81567786 -78031997 + L1Md_F2 LINE L1 6188 6578 -4 8 1207 2037 154 67 11 chr3 81570358 81570731 -78029052 - ORR1B1 LTR MaLR 0 394 1 8 1207 451 283 112 36 chr3 81570821 81571301 -78028482 + L1M3c LINE L1 914 1449 -4682 9 1207 6753 104 13 2 chr3 81571391 81572357 -78027426 + Lx LINE L1 5702 6651 -3 9 1207 469 189 65 8 chr3 81572675 81572798 -78026985 - Lx3C LINE L1 -7 6969 6840 9 1207 429 192 107 8 chr3 81572773 81572904 -78026879 - Lx3C LINE L1 -45 6931 6788 9 1207 2279 124 28 0 chr3 81572947 81573332 -78026451 - L1_Mus3 LINE L1 0 6638 6260 9 1207 321 98 0 0 chr3 81573332 81573373 -78026410 + L1_Mus3 LINE L1 6212 6252 -386 9 1207 556 206 84 129 chr3 81573442 81573620 -78026163 + URR1A DNA MER1_type 56 225 -1 9 1207 528 289 88 11 chr3 81573638 81573820 -78025963 + MLT1A0 LTR MaLR 162 357 -8 9 1207 453 285 94 15 chr3 81573821 81574024 -78025759 + MLT1A0-int LTR MaLR 2 220 -1515 9 1207 481 316 73 109 chr3 81574028 81574330 -78025453 + B4 SINE B4 2 292 0 9 1207 470 76 0 25 chr3 81574420 81574501 -78025282 + (TCTCTG)n Simple_repeat Simple_repeat 2 80 0 9 1207 371 38 19 0 chr3 81574501 81574554 -78025229 + (CA)n Simple_repeat Simple_repeat 1 54 0 9 1207 988 300 56 52 chr3 81574556 81575064 -78024719 + MLT-int LTR MaLR 99 699 -1036 9 1207 311 295 0 0 chr3 81575081 81575142 -78024641 + ID SINE ID 23 83 -141 1 1207 468 284 22 100 chr3 81575465 81575645 -78024138 + MLT-int LTR MaLR 1323 1488 -247 9 1207 1738 150 56 48 chr3 81575649 81576027 -78023756 + RMER6B LTR ERVK 2 382 -79 1 1207 920 193 11 22 chr3 81575997 81576182 -78023601 - RMER6B LTR ERVK -278 183 1 1 1207 451 286 15 15 chr3 81576399 81576534 -78023249 + MLT1A0 LTR MaLR 1 135 -230 1 1207 420 20 0 0 chr3 81576979 81577028 -78022755 + (TG)n Simple_repeat Simple_repeat 1 49 0 1 1207 3072 125 30 20 chr3 81577396 81577902 -78021881 + Lx LINE L1 6143 6653 -1 1 1207 473 0 18 0 chr3 81578077 81578134 -78021649 + (CA)n Simple_repeat Simple_repeat 2 59 0 1 1207 39362 34 2 6 chr3 81578778 81585161 -78014622 - L1Md_T LINE L1 0 6582 232 1 1207 1008 252 74 94 chr3 81585172 81585723 -78014060 - Lx7 LINE L1 0 7696 7157 1 1207 1115 69 0 20 chr3 81585728 81585876 -78013907 + B1_Mus2 SINE Alu 2 146 -1 1 1207 790 135 14 0 chr3 81585876 81586017 -78013766 + (GGAA)n Simple_repeat Simple_repeat 2 144 0 1 1207 1257 322 55 90 chr3 81586696 81587375 -78012408 - LTR41B LTR ERVL 0 758 104 1 1207 1266 275 28 48 chr3 81589307 81589742 -78010041 - Lx7 LINE L1 -243 7453 7028 1 1207 949 168 12 103 chr3 81590304 81590535 -78009248 + ORR1A4 LTR MaLR 1 275 -119 1 1207 274 75 0 48 chr3 81590514 81590556 -78009227 - RLTR25B LTR ERVK -988 40 1 1 1207 588 29 0 0 chr3 81590982 81591052 -78008731 + (TC)n Simple_repeat Simple_repeat 1 70 0 1 1207 648 333 40 23 chr3 81591071 81591421 -78008362 - Lx9 LINE L1 -179 7465 7110 1 1207 717 280 183 83 chr3 81591513 81591619 -78008164 - L1MCa LINE L1 -5119 1389 1280 1 1207 1950 112 42 66 chr3 81591619 81591954 -78007829 - ORR1A2 LTR MaLR 0 327 1 1 1207 717 280 183 83 chr3 81591954 81592121 -78007662 - L1MCa LINE L1 -5229 1279 1124 1 1207 231 88 0 0 chr3 81592121 81592155 -78007628 + (CTG)n Simple_repeat Simple_repeat 2 35 0 1 1207 717 280 183 83 chr3 81592155 81592246 -78007537 - L1MCa LINE L1 -5385 1123 1017 1 1207 234 62 0 0 chr3 81592246 81592278 -78007505 + (TTGG)n Simple_repeat Simple_repeat 4 35 0 1 1207 717 280 183 83 chr3 81592278 81593094 -78006689 - L1MCa LINE L1 -5492 1016 90 1 1207 413 299 47 16 chr3 81593154 81593344 -78006439 - L1MCa LINE L1 -5752 756 561 1 1207 378 269 97 21 chr3 81593784 81593928 -78005855 - L1MCa LINE L1 -5712 690 536 1 1207 275 296 43 43 chr3 81594412 81594504 -78005279 + RSINE1 SINE B4 59 150 -15 1 1207 402 79 0 0 chr3 81594510 81594573 -78005210 + (CAAA)n Simple_repeat Simple_repeat 2 64 0 1 1207 492 306 26 33 chr3 81594576 81594773 -78005010 + B3A SINE B2 5 211 -5 1 1207 660 111 0 0 chr3 81595516 81595615 -78004168 + (CATATA)n Simple_repeat Simple_repeat 4 102 0 1 1207 302 0 26 0 chr3 81595615 81595652 -78004131 + (GA)n Simple_repeat Simple_repeat 2 40 0 1 1207 33427 105 18 16 chr3 81595942 81602205 -77997578 - L1Md_F2 LINE L1 0 6582 320 1 1207 189 310 101 77 chr3 81602930 81603098 -77996685 + L3 LINE CR1 3329 3500 -989 1 1207 180 0 0 0 chr3 81604081 81604101 -77995682 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 1 1207 1622 147 54 75 chr3 81604270 81604601 -77995182 - ORR1A3 LTR MaLR 0 326 3 1 1207 227 365 20 20 chr3 81604800 81604898 -77994885 - L2a LINE L2 -36 3390 3293 1 1207 1292 102 11 5 chr3 81605177 81605365 -77994418 - B2_Mm1t SINE B2 -2 191 3 1 1207 24 77 0 0 chr3 81607314 81607366 -77992417 + AT_rich Low_complexity Low_complexity 1 52 0 1 1207 334 248 74 44 chr3 81608995 81609130 -77990653 + LTR37B LTR ERV1 330 468 0 1 1207 234 0 0 0 chr3 81609432 81609458 -77990325 + (T)n Simple_repeat Simple_repeat 1 26 0 1 1207 435 19 0 0 chr3 81609531 81609583 -77990200 + (TG)n Simple_repeat Simple_repeat 1 52 0 1 1207 830 152 244 17 chr3 81610314 81610494 -77989289 - URR1B DNA MER1_type 0 225 5 1 1207 305 290 141 45 chr3 81610915 81611011 -77988772 - MTE-int LTR MaLR -1352 228 129 1 1207 1066 145 85 19 chr3 81611011 81611222 -77988561 - URR1B DNA MER1_type 0 225 1 1 1207 305 290 141 45 chr3 81611222 81611302 -77988481 - MTE-int LTR MaLR -1452 128 35 1 1207 302 328 29 37 chr3 81611345 81611481 -77988302 - L1MC LINE L1 -2743 3403 3269 1 1207 489 47 0 0 chr3 81611716 81611780 -77988003 + (TG)n Simple_repeat Simple_repeat 1 64 0 1 1207 491 246 76 0 chr3 81611783 81611901 -77987882 - B3A SINE B2 -70 128 2 1 1207 266 248 68 8 chr3 81611984 81612102 -77987681 + L1MA9 LINE L1 6092 6216 -96 1 1207 284 84 53 126 chr3 81614281 81614376 -77985407 + L1_Mus3 LINE L1 6551 6638 0 1 1207 272 288 100 0 chr3 81614394 81614474 -77985309 - RSINE1 SINE B4 -44 121 34 1 1207 930 194 38 0 chr3 81614481 81614641 -77985142 + MTC LTR MaLR 180 345 -76 1 1207 402 57 0 0 chr3 81615331 81615384 -77984399 + (CAAAA)n Simple_repeat Simple_repeat 3 55 0 1 1207 8481 40 2 6 chr3 81615742 81617529 -77982254 - L1Md_F2 LINE L1 0 6582 4799 1 1207 7440 91 10 1 chr3 81618251 81619606 -77980177 - L1_Mus4 LINE L1 -3 6633 5261 1 1207 272 107 0 67 chr3 81619610 81619670 -77980113 + L1_Mur2 LINE L1 5267 5322 -555 1 1207 180 0 0 0 chr3 81620192 81620212 -77979571 + (T)n Simple_repeat Simple_repeat 1 20 0 1 1207 637 241 54 145 chr3 81621191 81621284 -77978499 - Lx2B LINE L1 -95 6913 6846 1 1207 213 39 0 0 chr3 81621284 81621310 -77978473 + (CACCT)n Simple_repeat Simple_repeat 3 28 0 1 1207 637 241 54 145 chr3 81621310 81621512 -77978271 - Lx2B LINE L1 -146 6854 6645 1 1207 6412 130 26 7 chr3 81621747 81622850 -77976933 + L1_Mur2 LINE L1 4595 5718 -159 1 1207 2979 208 69 10 chr3 81622848 81623571 -77976212 + Lx2B LINE L1 6235 7000 0 1 1207 249 33 0 0 chr3 81625718 81625748 -77974035 + (TTTTA)n Simple_repeat Simple_repeat 1 30 0 1 1207 674 261 7 0 chr3 81625755 81625893 -77973890 - B3 SINE B2 -76 140 2 1 1207 611 174 5 33 chr3 81626152 81626336 -77973447 + (TA)n Simple_repeat Simple_repeat 1 179 0 1 1207 192 136 22 43 chr3 81626481 81626573 -77973210 + (TTATA)n Simple_repeat Simple_repeat 5 94 0 1 1207 1029 24 0 0 chr3 81626979 81627103 -77972680 + (TC)n Simple_repeat Simple_repeat 2 125 0 1 1207 1206 63 0 0 chr3 81627103 81627356 -77972427 + (TG)n Simple_repeat Simple_repeat 1 253 0 1 1207 932 307 65 45 chr3 81627462 81628155 -77971628 - L1_Mur3 LINE L1 -323 5557 4851 1 1207 3355 197 49 13 chr3 81628212 81628526 -77971257 + RMER6D LTR ERVK 22 347 -373 1 1207 267 79 0 0 chr3 81628526 81628564 -77971219 + (GTGTG)n Simple_repeat Simple_repeat 1 38 0 1 1207 3355 197 49 13 chr3 81628564 81628924 -77970859 + RMER6D LTR ERVK 348 720 0 1 1207 336 266 77 66 chr3 81629045 81629226 -77970557 + Lx8 LINE L1 6126 6308 -1165 1 1207 22 0 0 0 chr3 81630068 81630090 -77969693 + AT_rich Low_complexity Low_complexity 1 22 0 1 1207 461 273 63 21 chr3 81630118 81630260 -77969523 + Lx8 LINE L1 7139 7286 -187 1 1207 247 371 101 62 chr3 81630261 81630488 -77969295 + B4A SINE B4 44 279 -13 1 1207 210 163 23 0 chr3 81630521 81630564 -77969219 + (CA)n Simple_repeat Simple_repeat 2 45 0 1 1207 231 381 19 0 chr3 81631687 81631792 -77967991 + PB1D10 SINE Alu 1 107 -10 1 1207 247 184 16 228 chr3 81631823 81631950 -77967833 + RLTRETN_Mm LTR ERVK 12 111 -211 1 1207 1638 26 11 0 chr3 81633357 81633548 -77966235 + B2_Mm1a SINE B2 1 193 0 1 1207 515 296 132 27 chr3 81634695 81635136 -77964647 + L1MB8 LINE L1 4771 5257 -889 1 1207 486 49 0 0 chr3 81635415 81635476 -77964307 + (TA)n Simple_repeat Simple_repeat 1 61 0 1 1207 350 273 244 4 chr3 81635484 81635738 -77964045 + L1MB8 LINE L1 5681 5995 -183 1 1207 181 279 0 44 chr3 81637693 81637738 -77962045 + MIR SINE MIR 52 94 -168 1 1207 532 267 75 26 chr3 81638079 81638304 -77961479 - Lx8 LINE L1 -461 7183 6816 1 1207 236 290 129 0 chr3 81638349 81638442 -77961341 + Lx8 LINE L1 7060 7164 -309 1 1207 351 243 46 0 chr3 81638549 81638701 -77961082 + (TA)n Simple_repeat Simple_repeat 1 159 0 1 1207 25 65 0 0 chr3 81638783 81638829 -77960954 + AT_rich Low_complexity Low_complexity 1 46 0 1 1207 3184 168 41 64 chr3 81639371 81640028 -77959755 - RLTR26 LTR ERVK 0 642 1 1 1207 617 322 51 68 chr3 81640368 81640661 -77959122 - B4 SINE B4 0 292 5 1 1207 370 326 50 1 chr3 81640980 81641205 -77958578 - L1MB4 LINE L1 -63 6111 5878 1 1207 268 424 23 28 chr3 81641227 81641443 -77958340 + ORR1E LTR MaLR 1 215 -144 1 1207 22 0 0 0 chr3 81641764 81641786 -77957997 + AT_rich Low_complexity Low_complexity 1 22 0 1 1207 2409 118 69 88 chr3 81641963 81642454 -77957329 + RLTR45 LTR ERVK 1 482 0 1 1207 1369 143 297 30 chr3 81642531 81642827 -77956956 + ORR1C1 LTR MaLR 3 377 -1 1 1207 470 152 11 0 chr3 81643384 81643476 -77956307 + (TA)n Simple_repeat Simple_repeat 2 94 0 1 1207 300 111 0 0 chr3 81643620 81643665 -77956118 + (TTTA)n Simple_repeat Simple_repeat 2 46 0 1 1207 1066 208 58 98 chr3 81643696 81643926 -77955857 + RMER17C LTR ERVK 1 205 -205 1 1207 228 35 0 0 chr3 81643926 81643955 -77955828 + (TG)n Simple_repeat Simple_repeat 2 30 0 1 1207 1066 208 58 98 chr3 81643955 81644151 -77955632 + RMER17C LTR ERVK 206 410 0 1 1207 423 0 0 0 chr3 81644778 81644825 -77954958 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 1207 1137 231 87 89 chr3 81644941 81645401 -77954382 - RMER6B LTR ERVK -2 459 1 1 1207 2770 88 20 23 chr3 81646347 81646744 -77953039 + MTA_Mm LTR MaLR 1 396 0 1 1207 1602 0 0 0 chr3 81646868 81647046 -77952737 + (TCTCCC)n Simple_repeat Simple_repeat 3 180 0 1 1207 26 0 0 0 chr3 81647711 81647737 -77952046 + AT_rich Low_complexity Low_complexity 1 26 0 1 1207 567 132 0 0 chr3 81647802 81647893 -77951890 + (TA)n Simple_repeat Simple_repeat 2 92 0 1 1207 23 92 0 0 chr3 81648010 81648075 -77951708 + AT_rich Low_complexity Low_complexity 1 65 0 1 1207 388 331 177 14 chr3 81648369 81648663 -77951120 + L1M4c LINE L1 1088 1429 -4955 1 1207 325 338 22 89 chr3 81648708 81648932 -77950851 + L1M4c LINE L1 1673 1881 -4597 1 1207 333 226 47 12 chr3 81649030 81649115 -77950668 + L1_Mur3 LINE L1 355 442 -7270 1 1207 4787 80 45 0 chr3 81649134 81649774 -77950009 - L1_Mus2 LINE L1 -1 6565 5897 1 1207 6714 99 4 16 chr3 81649776 81650822 -77948961 + L1_Mm LINE L1 4458 5490 -393 2 1207 228 282 0 0 chr3 81651159 81651244 -77948539 + A-rich Low_complexity Low_complexity 1 85 0 2 1207 267 371 72 8 chr3 81651394 81651519 -77948264 + ORR1E LTR MaLR 42 174 -185 2 1207 947 319 65 38 chr3 81651681 81652078 -77947705 + MTE-int LTR MaLR 1 408 -1172 2 1207 21081 56 5 6 chr3 81652158 81655720 -77944063 - L1Md_F3 LINE L1 -13 6571 3014 2 1207 4729 142 19 14 chr3 81655729 81656728 -77943055 - L1Md_F3 LINE L1 -4474 1409 405 2 1207 504 318 80 28 chr3 81656730 81657018 -77942765 + L1MB8 LINE L1 4998 5300 -846 2 1207 292 266 43 1 chr3 81657069 81657221 -77942562 + L1MB8 LINE L1 5355 5519 -655 2 1207 261 0 0 0 chr3 81657293 81657322 -77942461 + (CA)n Simple_repeat Simple_repeat 2 30 0 2 1207 414 0 0 0 chr3 81657322 81657367 -77942416 + (TA)n Simple_repeat Simple_repeat 2 47 0 2 1207 276 244 51 0 chr3 81657524 81657602 -77942181 + L1MB8 LINE L1 5850 5931 -247 2 1208 23 0 0 0 chr3 81658099 81658122 -77941661 + AT_rich Low_complexity Low_complexity 1 23 0 2 1208 259 312 26 13 chr3 81659311 81659389 -77940394 - ID4_ SINE ID -1 82 4 2 1208 372 111 0 0 chr3 81659775 81659838 -77939945 + (TCTA)n Simple_repeat Simple_repeat 4 66 0 2 1208 249 309 48 0 chr3 81660703 81660787 -77938996 + B1F2 SINE Alu 3 90 -59 2 1208 195 289 37 62 chr3 81660863 81660944 -77938839 + L4 LINE RTE 1064 1142 -887 2 1208 1802 164 13 94 chr3 81660946 81661330 -77938453 + ORR1B1 LTR MaLR 41 393 -1 2 1208 818 251 190 12 chr3 81661744 81662002 -77937781 - RCHARR1 DNA MER1_type -573 401 98 2 1208 2709 93 39 5 chr3 81662161 81662548 -77937235 + MTB LTR MaLR 1 400 0 2 1208 7645 58 3 6 chr3 81662716 81663687 -77936096 + L1Md_F2 LINE L1 5599 6566 -16 2 1208 1921 278 65 45 chr3 81664654 81665150 -77934633 - RLTR40 LTR ERVK -4 813 298 2 1208 351 0 0 0 chr3 81665150 81665189 -77934594 + (CATA)n Simple_repeat Simple_repeat 1 39 0 2 1208 1921 278 65 45 chr3 81665189 81665471 -77934312 - RLTR40 LTR ERVK -520 297 19 2 1208 4238 69 0 2 chr3 81666288 81666827 -77932956 - L1_Mus1 LINE L1 -1 6566 6029 2 1208 3253 65 1 0 chr3 81666827 81667329 -77932454 + L1_Mus1 LINE L1 5515 6018 -549 2 1208 3549 20 0 0 chr3 81667917 81668313 -77931470 + MTA_Mm LTR MaLR 1 396 0 2 1208 325 277 123 24 chr3 81668674 81668844 -77930939 + LTR73 LTR ERV1 166 352 -220 2 1208 213 39 0 0 chr3 81669248 81669274 -77930509 + (CATA)n Simple_repeat Simple_repeat 3 28 0 2 1208 271 268 44 44 chr3 81669507 81669597 -77930186 - MER34A LTR ERV1 -478 93 4 2 1208 516 292 50 0 chr3 81671640 81671760 -77928023 + B3A SINE B2 1 126 -72 2 1208 6761 92 20 1 chr3 81672032 81673018 -77926765 - L1_Mus4 LINE L1 0 6636 5632 2 1208 227 271 139 12 chr3 81673359 81673445 -77926338 + LTR48B LTR ERV1 4 100 -544 2 1208 32 26 0 0 chr3 81674479 81674518 -77925265 + AT_rich Low_complexity Low_complexity 1 39 0 2 1208 777 22 0 0 chr3 81674582 81674673 -77925110 + (TTC)n Simple_repeat Simple_repeat 3 93 0 2 1208 495 0 0 0 chr3 81674673 81674728 -77925055 + (TC)n Simple_repeat Simple_repeat 1 55 0 2 1208 1948 127 3 7 chr3 81674728 81675030 -77924753 - Lx LINE L1 -15 6966 6666 2 1208 230 331 23 8 chr3 81675062 81675190 -77924593 + CT-rich Low_complexity Low_complexity 2 131 0 2 1208 5597 122 24 20 chr3 81675192 81676128 -77923655 - Lx LINE L1 -2 6652 5714 2 1208 5670 90 99 6 chr3 81676133 81676994 -77922789 + L1Md_F2 LINE L1 5641 6581 -1 2 1208 21 0 0 0 chr3 81677155 81677176 -77922607 + AT_rich Low_complexity Low_complexity 1 21 0 2 1208 881 225 23 28 chr3 81677196 81677411 -77922372 - RLTRETN_Mm LTR ERVK 0 322 109 2 1208 4744 144 5 25 chr3 81677775 81678586 -77921197 - Lx2 LINE L1 0 6997 6203 2 1208 6649 88 24 0 chr3 81679024 81680489 -77919294 - L1_Mus1 LINE L1 -1 6566 5070 2 1208 2048 92 19 25 chr3 81680997 81681320 -77918463 + L1_Mus3 LINE L1 6317 6637 -1 2 1208 303 28 0 0 chr3 81681620 81681656 -77918127 + (GA)n Simple_repeat Simple_repeat 2 37 0 2 1208 423 0 0 0 chr3 81682666 81682713 -77917070 + (CA)n Simple_repeat Simple_repeat 2 48 0 2 1208 7095 74 14 1 chr3 81682973 81684123 -77915660 + L1_Mus1 LINE L1 5402 6566 -1 2 1208 263 287 21 84 chr3 81684315 81684410 -77915373 + B1_Mus1 SINE Alu 13 101 -47 2 1208 365 87 0 0 chr3 81684549 81684618 -77915165 + L1_Mus4 LINE L1 6568 6636 0 2 1208 3560 236 70 62 chr3 81685164 81686170 -77913613 + RMER1B Other Other 44 1057 -9 2 1208 345 100 0 0 chr3 81686195 81686245 -77913538 + (GGA)n Simple_repeat Simple_repeat 3 52 0 2 1208 1077 106 0 22 chr3 81686260 81686443 -77913340 + (GAA)n Simple_repeat Simple_repeat 2 180 0 2 1208 1637 258 28 6 chr3 81686878 81687286 -77912497 + MTC LTR MaLR 1 404 -17 2 1208 24 0 0 0 chr3 81688689 81688713 -77911070 + AT_rich Low_complexity Low_complexity 1 24 0 2 1208 219 157 19 38 chr3 81688832 81688885 -77910898 + T-rich Low_complexity Low_complexity 4 55 0 2 1208 342 0 0 0 chr3 81690381 81690419 -77909364 + (TG)n Simple_repeat Simple_repeat 2 39 0 2 1208 591 15 0 0 chr3 81691020 81691088 -77908695 + (GA)n Simple_repeat Simple_repeat 1 68 0 2 1208 252 59 0 0 chr3 81691627 81691661 -77908122 + (TAAAA)n Simple_repeat Simple_repeat 2 35 0 2 1208 1285 93 22 0 chr3 81691693 81691875 -77907908 + B2_Mm2 SINE B2 3 188 -7 2 1208 221 224 17 18 chr3 81692081 81692259 -77907524 + GA-rich Low_complexity Low_complexity 1 177 0 2 1208 1352 171 24 8 chr3 81693533 81693786 -77905997 - Lx4B LINE L1 -4 7054 6798 2 1208 11162 133 33 44 chr3 81693787 81696057 -77903726 + L1_Mur2 LINE L1 2507 4751 -1126 2 1208 27 29 0 0 chr3 81696101 81696135 -77903648 + AT_rich Low_complexity Low_complexity 1 34 0 2 1208 1616 171 7 20 chr3 81696200 81696505 -77903278 + RLTR10E LTR ERVK 1 301 -10 2 1208 180 340 0 0 chr3 81697667 81697714 -77902069 + MIR SINE MIR 47 93 -115 2 1208 294 292 100 11 chr3 81699047 81699227 -77900556 + L1MD1 LINE L1 6046 6241 -1 2 1208 186 280 9 131 chr3 81699845 81699952 -77899831 + L3 LINE CR1 2204 2297 -2192 2 1208 264 77 0 0 chr3 81700028 81700067 -77899716 + (TTG)n Simple_repeat Simple_repeat 1 39 0 2 1208 564 265 0 26 chr3 81701345 81701496 -77898287 - B1_Mur1 SINE Alu 0 149 3 2 1208 531 321 31 10 chr3 81703845 81704037 -77895746 - B3A SINE B2 0 198 3 2 1208 674 266 134 23 chr3 81704105 81704942 -77894841 + L1MA8 LINE L1 5343 6299 -1 2 1208 404 363 83 78 chr3 81705097 81705470 -77894313 + MTEa LTR MaLR 5 379 0 2 1208 187 80 0 0 chr3 81705617 81705642 -77894141 - L3 LINE CR1 -1904 2585 2561 2 1208 717 288 103 9 chr3 81705778 81706002 -77893781 - MT2A LTR ERVL -2 531 287 2 1208 351 233 77 11 chr3 81706048 81706139 -77893644 - MTEa LTR MaLR -264 115 19 2 1208 284 337 76 0 chr3 81706290 81706382 -77893401 - B3 SINE B2 -5 211 113 2 1208 23007 175 24 14 chr3 81706504 81709595 -77890188 + Lx LINE L1 433 3490 -2393 2 1208 266 0 29 0 chr3 81709595 81709629 -77890154 + (CAAA)n Simple_repeat Simple_repeat 3 37 0 2 1208 23007 150 15 14 chr3 81709629 81712791 -77886992 + Lx LINE L1 3491 6654 0 2 1208 561 101 0 0 chr3 81713628 81713727 -77886056 + (TC)n Simple_repeat Simple_repeat 2 100 0 2 1208 207 0 0 0 chr3 81713727 81713750 -77886033 + (CA)n Simple_repeat Simple_repeat 1 23 0 2 1208 594 0 0 0 chr3 81715901 81715967 -77883816 + (TC)n Simple_repeat Simple_repeat 1 66 0 2 1208 411 73 0 0 chr3 81716921 81716976 -77882807 + (A)n Simple_repeat Simple_repeat 1 55 0 2 1208 549 279 21 42 chr3 81719320 81719462 -77880321 - B1F SINE Alu -10 139 1 2 1208 21 0 0 0 chr3 81719900 81719921 -77879862 + AT_rich Low_complexity Low_complexity 1 21 0 2 1208 241 327 45 36 chr3 81720439 81720550 -77879233 + MIRc SINE MIR 4 115 -153 2 1208 238 0 81 0 chr3 81722839 81722876 -77876907 + (TTTTTA)n Simple_repeat Simple_repeat 2 41 0 2 1208 738 126 22 0 chr3 81723400 81723535 -77876248 + (TA)n Simple_repeat Simple_repeat 2 139 0 2 1208 192 77 0 0 chr3 81725159 81725185 -77874598 + (TTTC)n Simple_repeat Simple_repeat 3 28 0 2 1208 207 0 0 0 chr3 81725487 81725510 -77874273 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2 1208 22 35 0 0 chr3 81725920 81725949 -77873834 + AT_rich Low_complexity Low_complexity 1 29 0 2 1208 531 350 62 35 chr3 81727562 81728077 -77871706 - MLT2B4 LTR ERVL -12 544 1 2 1208 251 328 76 17 chr3 81728874 81728992 -77870791 + MIR3 SINE MIR 83 207 -1 2 1208 351 0 0 0 chr3 81730183 81730222 -77869561 + (CTTG)n Simple_repeat Simple_repeat 2 40 0 2 1208 814 275 16 63 chr3 81731376 81731628 -77868155 + MTE2b LTR MaLR 140 379 0 2 1208 195 330 32 21 chr3 81732311 81732404 -77867379 + MIR SINE MIR 88 181 -81 2 1208 990 61 0 43 chr3 81732520 81732658 -77867125 - B1_Mus1 SINE Alu 0 148 17 2 1208 402 0 26 64 chr3 81732661 81732739 -77867044 + (TTTG)n Simple_repeat Simple_repeat 2 76 0 2 1208 274 287 112 49 chr3 81733531 81733798 -77865985 - Lx8 LINE L1 -3 7470 7187 2 1208 239 209 84 95 chr3 81733995 81734090 -77865693 - MER5A1 DNA MER1_type -71 95 2 2 1208 255 253 38 51 chr3 81734587 81734666 -77865117 - MER45A DNA Tip100 -3 175 98 2 1208 204 247 75 86 chr3 81735219 81735312 -77864471 - L2c LINE L2 -5 3382 3291 2 1208 240 111 0 0 chr3 81737247 81737283 -77862500 + (A)n Simple_repeat Simple_repeat 1 36 0 2 1208 1232 290 18 36 chr3 81737727 81738113 -77861670 - MTEb LTR MaLR 0 379 1 2 1208 361 279 11 11 chr3 81740309 81740396 -77859387 + PB1 SINE Alu 30 116 -11 2 1208 196 336 74 25 chr3 81740625 81740747 -77859036 + MIR SINE MIR 40 167 -95 2 1208 288 186 0 0 chr3 81741460 81741519 -77858264 + (TATG)n Simple_repeat Simple_repeat 2 60 0 2 1208 330 357 0 0 chr3 81741519 81741648 -77858135 + (CATA)n Simple_repeat Simple_repeat 2 130 0 3 1208 21 0 0 0 chr3 81741821 81741842 -77857941 + AT_rich Low_complexity Low_complexity 1 21 0 3 1208 293 300 0 0 chr3 81742078 81742138 -77857645 + tRNA-Ala-GCA tRNA tRNA 2 61 -14 3 1208 467 299 102 13 chr3 81743341 81743810 -77855973 - L1M4 LINE L1 -2271 3872 3367 3 1208 234 0 0 0 chr3 81744025 81744051 -77855732 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 3 1208 304 363 82 44 chr3 81746809 81747152 -77852631 - Tigger9b DNA MER2_type -88 536 181 3 1208 438 20 0 0 chr3 81747362 81747413 -77852370 + (TG)n Simple_repeat Simple_repeat 2 52 0 3 1208 4325 63 5 4 chr3 81748002 81748582 -77851201 + L1Md_F2 LINE L1 6021 6582 0 3 1208 4325 63 5 4 chr3 81748582 81748596 -77851187 + L1Md_F2 LINE L1 6561 6574 -8 3 1208 905 0 9 0 chr3 81749884 81749989 -77849794 + (TAGA)n Simple_repeat Simple_repeat 4 109 0 3 1208 378 0 0 0 chr3 81750366 81750408 -77849375 + (TG)n Simple_repeat Simple_repeat 2 43 0 3 1208 260 338 87 74 chr3 81751807 81752209 -77847574 - L2b LINE L2 0 3375 2971 3 1208 371 355 103 43 chr3 81754804 81755154 -77844629 + MLT1J LTR MaLR 38 408 -104 3 1208 483 18 0 0 chr3 81755649 81755705 -77844078 + (TG)n Simple_repeat Simple_repeat 2 57 0 3 1208 191 250 109 0 chr3 81755806 81755870 -77843913 + L3 LINE CR1 800 870 -3619 3 1208 268 351 0 0 chr3 81756595 81756672 -77843111 + ID4 SINE ID 4 80 -3 3 1208 186 71 0 0 chr3 81759938 81759966 -77839817 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 3 1208 384 100 0 62 chr3 81760576 81760640 -77839143 + B1_Mus1 SINE Alu 22 81 -67 3 1208 234 242 32 0 chr3 81760587 81760649 -77839134 + B4 SINE B4 113 176 -116 3 1208 393 75 0 0 chr3 81760651 81760704 -77839079 + (GAA)n Simple_repeat Simple_repeat 2 54 0 3 1208 412 282 172 10 chr3 81761311 81761515 -77838268 - MER2 DNA MER2_type -3 342 106 3 1208 21 0 0 0 chr3 81761924 81761945 -77837838 + AT_rich Low_complexity Low_complexity 1 21 0 3 1208 476 309 80 65 chr3 81763172 81763373 -77836410 - B3A SINE B2 0 216 13 3 1208 219 261 0 0 chr3 81763650 81763696 -77836087 + MIRb SINE MIR 37 82 -186 3 1208 1120 139 80 19 chr3 81763949 81764161 -77835622 - URR1B DNA MER1_type 0 225 1 3 1208 224 143 24 0 chr3 81764796 81764838 -77834945 + A-rich Low_complexity Low_complexity 2 44 0 3 1208 470 292 17 0 chr3 81766176 81766296 -77833487 - RSINE1 SINE B4 -42 123 2 3 1208 25 0 0 0 chr3 81766333 81766358 -77833425 + AT_rich Low_complexity Low_complexity 1 25 0 3 1208 26 107 0 0 chr3 81766972 81767075 -77832708 + AT_rich Low_complexity Low_complexity 1 103 0 3 1208 501 260 10 0 chr3 81767233 81767337 -77832446 + PB1D10 SINE Alu 5 109 -8 3 1208 207 372 20 20 chr3 81768878 81769026 -77830757 - L2 LINE L2 -570 2849 2702 3 1208 678 259 93 39 chr3 81769098 81769303 -77830480 + B3 SINE B2 1 216 0 3 1208 3510 20 2 0 chr3 81769976 81770371 -77829412 + MTA_Mm LTR MaLR 1 396 0 3 1208 203 103 26 0 chr3 81770530 81770569 -77829214 + (TAA)n Simple_repeat Simple_repeat 2 41 0 3 1208 22 94 0 0 chr3 81772435 81772499 -77827284 + AT_rich Low_complexity Low_complexity 1 64 0 3 1208 1135 69 7 0 chr3 81773750 81773895 -77825888 + B1_Mus1 SINE Alu 2 147 -1 3 1208 39 0 0 0 chr3 81773904 81773943 -77825840 + AT_rich Low_complexity Low_complexity 1 39 0 3 1208 2394 176 49 30 chr3 81773967 81774363 -77825420 + RLTR16 LTR ERVK 6 400 -105 3 1208 378 0 0 0 chr3 81774363 81774405 -77825378 + (TG)n Simple_repeat Simple_repeat 2 43 0 3 1208 2394 176 49 30 chr3 81774405 81774499 -77825284 + RLTR16 LTR ERVK 401 505 0 3 1208 894 178 0 0 chr3 81774684 81774750 -77825033 + polypurine Low_complexity Low_complexity 1 66 0 3 1208 1137 123 0 0 chr3 81774750 81774929 -77824854 + (GA)n Simple_repeat Simple_repeat 1 179 0 3 1208 894 178 0 0 chr3 81774929 81775042 -77824741 + polypurine Low_complexity Low_complexity 67 179 0 3 1208 25 31 0 0 chr3 81775697 81775729 -77824054 + AT_rich Low_complexity Low_complexity 1 32 0 3 1208 186 43 0 0 chr3 81776008 81776031 -77823752 + (CTTG)n Simple_repeat Simple_repeat 1 23 0 3 1208 1124 115 6 22 chr3 81776032 81776064 -77823719 - B2_Mm2 SINE B2 -17 178 151 3 1208 378 0 0 0 chr3 81776064 81776106 -77823677 + (TG)n Simple_repeat Simple_repeat 2 43 0 3 1208 1124 115 6 22 chr3 81776106 81776251 -77823532 - B2_Mm2 SINE B2 -45 150 5 3 1208 26 64 0 0 chr3 81777865 81777912 -77821871 + AT_rich Low_complexity Low_complexity 1 47 0 3 1208 180 0 0 0 chr3 81778470 81778490 -77821293 + (A)n Simple_repeat Simple_repeat 1 20 0 3 1208 5813 147 4 2 chr3 81780052 81781052 -77818731 + Lx2 LINE L1 5973 6974 -23 3 1208 988 65 0 0 chr3 81781571 81781695 -77818088 + B1_Mm SINE Alu 23 146 -1 3 1208 21 0 0 0 chr3 81782550 81782571 -77817212 + AT_rich Low_complexity Low_complexity 1 21 0 3 1208 371 191 0 14 chr3 81782595 81782664 -77817119 - ID4 SINE ID -14 69 2 3 1208 956 271 106 49 chr3 81783220 81783589 -77816194 - Lx6 LINE L1 -13 7447 7058 3 1208 286 330 10 20 chr3 81783989 81784088 -77815695 - PB1D10 SINE Alu -9 108 11 3 1208 474 254 157 31 chr3 81784101 81784292 -77815491 - B3 SINE B2 -1 215 1 3 1208 285 29 0 0 chr3 81785223 81785257 -77814526 + (TGAA)n Simple_repeat Simple_repeat 3 36 0 3 1208 185 383 69 53 chr3 81785837 81786140 -77813643 + L2c LINE L2 3049 3356 -31 3 1208 251 224 99 66 chr3 81786443 81786534 -77813249 - ORR1E LTR MaLR -7 372 279 3 1208 189 0 0 0 chr3 81786603 81786624 -77813159 + (TG)n Simple_repeat Simple_repeat 1 21 0 3 1208 477 354 44 39 chr3 81786637 81786840 -77812943 - ORR1E LTR MaLR -154 205 2 3 1208 5227 86 6 1 chr3 81787704 81788414 -77811369 + L1_Mus3 LINE L1 5914 6626 -12 3 1209 1237 231 75 72 chr3 81789015 81789389 -77810394 + MTE2b LTR MaLR 5 379 0 3 1209 629 238 0 8 chr3 81789628 81789751 -77810032 - B1_Mur4 SINE Alu 0 150 29 3 1209 369 288 0 0 chr3 81790035 81790115 -77809668 - RSINE1 SINE B4 -75 90 11 3 1209 1148 262 52 55 chr3 81791032 81791359 -77808424 - ORR1E LTR MaLR -29 330 5 3 1209 283 95 0 0 chr3 81791917 81791959 -77807824 + MTD LTR MaLR 356 397 -22 3 1209 244 308 56 28 chr3 81792082 81792189 -77807594 + PB1D9 SINE Alu 3 112 -8 3 1209 1481 202 108 9 chr3 81792440 81792775 -77807008 + ORR1D1 LTR MaLR 5 372 -2 3 1209 3469 246 93 62 chr3 81792775 81793030 -77806753 + ORR1D1-int LTR MaLR 4 235 -1135 3 1209 321 26 0 0 chr3 81793030 81793068 -77806715 + (CCA)n Simple_repeat Simple_repeat 1 38 0 3 1209 3469 246 93 62 chr3 81793068 81793829 -77805954 + ORR1D1-int LTR MaLR 236 1052 -318 3 1209 309 246 116 0 chr3 81793833 81793902 -77805881 - B3A SINE B2 -121 77 1 3 1209 307 169 10 10 chr3 81794191 81794287 -77805496 + T-rich Low_complexity Low_complexity 5 100 0 3 1209 31 44 0 0 chr3 81795131 81795176 -77804607 + AT_rich Low_complexity Low_complexity 1 45 0 3 1209 34 24 0 0 chr3 81795447 81795488 -77804295 + AT_rich Low_complexity Low_complexity 1 41 0 3 1209 308 306 20 20 chr3 81795593 81795693 -77804090 + L1MC4a LINE L1 7094 7193 -689 3 1209 307 352 40 40 chr3 81795880 81796105 -77803678 + L1MC4a LINE L1 7453 7677 -365 3 1209 290 314 116 62 chr3 81796321 81796596 -77803187 - LTR48 LTR ERV1 -83 704 415 3 1209 757 291 82 38 chr3 81797982 81798350 -77801433 + Lx8 LINE L1 7090 7473 0 3 1209 1615 127 37 18 chr3 81798545 81798817 -77800966 + Lx LINE L1 6373 6649 -5 3 1209 441 36 0 0 chr3 81798962 81799017 -77800766 + (TA)n Simple_repeat Simple_repeat 2 56 0 3 1209 243 0 0 0 chr3 81799017 81799043 -77800740 + (TG)n Simple_repeat Simple_repeat 2 28 0 3 1209 209 196 0 18 chr3 81799078 81799135 -77800648 + GA-rich Low_complexity Low_complexity 3 58 0 3 1209 471 48 0 0 chr3 81800399 81800461 -77799322 + (CA)n Simple_repeat Simple_repeat 1 62 0 3 1209 246 136 0 0 chr3 81800561 81800605 -77799178 + (TTTC)n Simple_repeat Simple_repeat 2 45 0 3 1209 423 0 0 0 chr3 81802179 81802226 -77797557 + (TG)n Simple_repeat Simple_repeat 2 48 0 3 1209 408 329 0 67 chr3 81802248 81802398 -77797385 - RSINE1 SINE B4 -21 144 5 3 1209 210 37 0 0 chr3 81803460 81803487 -77796296 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 3 1209 507 134 0 0 chr3 81804580 81804662 -77795121 + (CA)n Simple_repeat Simple_repeat 2 83 0 3 1209 487 360 71 61 chr3 81804952 81805346 -77794437 + L1M4b LINE L1 18 415 -6919 3 1209 189 258 0 0 chr3 81806376 81806442 -77793341 + (TG)n Simple_repeat Simple_repeat 1 66 0 3 1209 37 23 0 0 chr3 81806544 81806588 -77793195 + AT_rich Low_complexity Low_complexity 1 44 0 3 1209 213 65 0 0 chr3 81807017 81807048 -77792735 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 3 1209 485 292 71 48 chr3 81807455 81807890 -77791893 + L1MA5 LINE L1 5431 5875 -425 3 1209 397 294 39 64 chr3 81808808 81808964 -77790819 + B4A SINE B4 1 152 -140 3 1209 23 0 0 0 chr3 81811745 81811768 -77788015 + AT_rich Low_complexity Low_complexity 1 23 0 3 1209 1303 104 16 0 chr3 81811777 81811960 -77787823 + B2_Mm2 SINE B2 2 187 -8 3 1209 202 308 93 37 chr3 81813043 81813151 -77786632 + L2b LINE L2 3251 3364 -11 3 1209 457 58 14 14 chr3 81813912 81813982 -77785801 + (TC)n Simple_repeat Simple_repeat 2 71 0 3 1209 263 98 48 16 chr3 81814091 81814153 -77785630 + CT-rich Low_complexity Low_complexity 3 66 0 3 1209 2298 44 3 101 chr3 81814398 81814754 -77785029 + RLTR10 LTR ERVK 1 321 -69 3 1209 265 159 0 31 chr3 81814772 81814837 -77784946 + RLTR10 LTR ERVK 259 321 -69 3 1209 882 78 0 15 chr3 81814838 81814968 -77784815 + RLTR10 LTR ERVK 259 386 -4 3 1209 261 287 156 9 chr3 81815179 81815288 -77784495 + MIRb SINE MIR 76 200 -68 3 1209 266 297 0 21 chr3 81815516 81815657 -77784126 + (TGGG)n Simple_repeat Simple_repeat 2 139 0 3 1209 252 204 55 18 chr3 81815658 81815713 -77784070 + tRNA-Ala-GCY_ tRNA tRNA 2 58 -17 4 1209 311 332 55 135 chr3 81816581 81816818 -77782965 - MTE2b LTR MaLR -10 369 152 4 1209 439 251 75 48 chr3 81816814 81816835 -77782948 + CYRA11_Mm Unknown Y-chromosome 153 178 -439 4 1209 1064 213 38 5 chr3 81816835 81817047 -77782736 - URR1B DNA MER1_type 0 225 7 4 1209 292 322 53 20 chr3 81817065 81817217 -77782566 - MTE2b LTR MaLR -257 162 6 4 1209 220 338 67 37 chr3 81818692 81818827 -77780956 - MIRc SINE MIR -70 198 60 4 1209 348 24 0 0 chr3 81819842 81819883 -77779900 + (TG)n Simple_repeat Simple_repeat 1 41 0 4 1209 190 270 112 60 chr3 81822464 81822598 -77777185 - L2 LINE L2 -944 2475 2335 4 1209 442 226 15 0 chr3 81823019 81823156 -77776627 + (TG)n Simple_repeat Simple_repeat 2 140 0 4 1209 350 162 14 0 chr3 81823647 81823721 -77776062 + (TG)n Simple_repeat Simple_repeat 2 76 0 4 1209 183 80 0 0 chr3 81823731 81823756 -77776027 + (CA)n Simple_repeat Simple_repeat 2 26 0 4 1209 250 286 89 11 chr3 81824176 81824356 -77775427 + L1MB3 LINE L1 5961 6154 -29 4 1209 29 0 0 0 chr3 81824426 81824455 -77775328 + AT_rich Low_complexity Low_complexity 1 29 0 4 1209 866 308 65 61 chr3 81825334 81825389 -77774394 + MTD LTR MaLR 6 56 -363 4 1209 1281 157 9 13 chr3 81825389 81825615 -77774168 + URR1B DNA MER1_type 1 225 0 4 1209 866 308 65 61 chr3 81825615 81825971 -77773812 + MTD LTR MaLR 57 419 0 4 1209 663 63 0 0 chr3 81827698 81827793 -77771990 - L1_Mus2 LINE L1 0 6566 6472 4 1209 595 40 0 0 chr3 81827793 81827867 -77771916 + L1_Mus2 LINE L1 6396 6469 -98 4 1209 288 0 0 0 chr3 81827890 81827922 -77771861 + (TG)n Simple_repeat Simple_repeat 2 33 0 4 1209 352 67 0 0 chr3 81828385 81828430 -77771353 + B3 SINE B2 6 50 -166 4 1209 875 182 21 21 chr3 81828432 81828623 -77771160 + B2_Mm2 SINE B2 4 194 -1 4 1209 1085 88 0 0 chr3 81828706 81828853 -77770930 - B1_Mm SINE Alu 0 147 1 4 1209 1110 269 41 9 chr3 81828865 81829203 -77770580 + Lx8 LINE L1 6799 7147 -326 4 1209 246 311 61 18 chr3 81829201 81829365 -77770418 + Lx8 LINE L1 7301 7471 -2 4 1209 528 306 7 14 chr3 81829379 81829525 -77770258 + MTE2b LTR MaLR 168 312 -67 4 1209 271 380 9 0 chr3 81829545 81829658 -77770125 + G-rich Low_complexity Low_complexity 3 116 0 4 1209 2537 185 38 6 chr3 81829971 81830444 -77769339 - MTC-int LTR MaLR -329 929 442 4 1209 228 304 48 36 chr3 81830448 81830615 -77769168 + MER33 DNA MER1_type 149 317 -7 4 1209 191 83 0 77 chr3 81830841 81830880 -77768903 + (ATG)n Simple_repeat Simple_repeat 3 38 0 4 1209 458 286 106 32 chr3 81830881 81831069 -77768714 + B3 SINE B2 5 206 -10 4 1209 227 296 37 9 chr3 81831083 81831192 -77768591 + Lx8 LINE L1 7358 7469 -4 4 1209 410 329 23 76 chr3 81831707 81831878 -77767905 + B4 SINE B4 5 166 -126 4 1209 1383 169 0 11 chr3 81832301 81832565 -77767218 - L1_Mur2 LINE L1 -1425 4452 4192 4 1209 1819 184 63 20 chr3 81832565 81832964 -77766819 + Lx4B LINE L1 6638 7053 -5 4 1209 250 88 88 96 chr3 81835382 81835507 -77764276 + (TATAG)n Simple_repeat Simple_repeat 2 125 0 4 1209 275 235 40 36 chr3 81835602 81835703 -77764080 + PB1D7 SINE Alu 12 120 0 4 1209 260 311 19 19 chr3 81835755 81835860 -77763923 + BC1_Mm scRNA scRNA 1 105 -47 4 1209 192 77 0 0 chr3 81836750 81836776 -77763007 + (CATATA)n Simple_repeat Simple_repeat 2 27 0 4 1209 189 0 0 0 chr3 81838189 81838210 -77761573 + (TAAAAA)n Simple_repeat Simple_repeat 4 24 0 4 1209 267 133 0 0 chr3 81839395 81839440 -77760343 + (CAT)n Simple_repeat Simple_repeat 2 46 0 4 1209 855 61 0 0 chr3 81839679 81839793 -77759990 + (TC)n Simple_repeat Simple_repeat 2 115 0 4 1209 227 115 0 37 chr3 81839828 81839882 -77759901 + (CAGAGA)n Simple_repeat Simple_repeat 3 54 0 4 1209 509 276 87 13 chr3 81839893 81840080 -77759703 - B4A SINE B4 -65 227 23 4 1209 263 279 31 133 chr3 81840230 81840358 -77759425 - B4 SINE B4 0 292 178 4 1209 382 263 109 0 chr3 81840851 81840988 -77758795 + Lx8 LINE L1 6803 6954 -519 4 1209 362 264 158 77 chr3 81841174 81841298 -77758485 + Lx8 LINE L1 7204 7356 -117 4 1209 256 24 0 47 chr3 81841298 81841341 -77758442 + (CAAAA)n Simple_repeat Simple_repeat 5 45 0 4 1209 362 264 158 77 chr3 81841341 81841462 -77758321 + Lx8 LINE L1 7357 7469 -4 4 1209 191 22 0 115 chr3 81841467 81841519 -77758264 + (TTTTTG)n Simple_repeat Simple_repeat 2 47 0 4 1209 1181 68 0 0 chr3 81841519 81841665 -77758118 - B1_Mm SINE Alu 0 147 2 4 1209 418 156 0 25 chr3 81843550 81843629 -77756154 - B4 SINE B4 -131 161 85 4 1209 542 42 0 0 chr3 81843557 81843628 -77756155 - B1_Mus1 SINE Alu -77 71 1 4 1209 263 218 12 93 chr3 81843628 81843643 -77756140 - MT2B LTR ERVL -374 227 149 4 1209 2182 281 63 19 chr3 81845007 81845740 -77754043 + Lx8 LINE L1 6304 7068 -405 4 1209 449 316 114 6 chr3 81845741 81845916 -77753867 + ID_B1 SINE B4 29 222 -2 4 1209 561 30 0 0 chr3 81849221 81849288 -77750495 + (TG)n Simple_repeat Simple_repeat 1 67 0 4 1209 546 16 0 0 chr3 81851336 81851399 -77748384 + (TTTTG)n Simple_repeat Simple_repeat 2 64 0 4 1209 2222 153 89 95 chr3 81853715 81854243 -77745540 - RLTR24 LTR ERV1 -2 527 3 4 1209 462 286 111 35 chr3 81854322 81854521 -77745262 + B3 SINE B2 3 216 0 4 1209 1109 102 7 0 chr3 81854587 81854734 -77745049 + B1_Mus1 SINE Alu 1 148 0 4 1209 32 75 0 0 chr3 81854802 81854869 -77744914 + AT_rich Low_complexity Low_complexity 1 67 0 4 1209 559 174 134 15 chr3 81854895 81855029 -77744754 + B1_Mur4 SINE Alu 1 150 0 4 1209 398 342 53 7 chr3 81856347 81856497 -77743286 - MLT1H1 LTR MaLR -359 196 40 4 1209 383 336 24 16 chr3 81857316 81857440 -77742343 + RSINE1 SINE B4 12 136 -29 4 1209 477 0 0 0 chr3 81857613 81857666 -77742117 + (TC)n Simple_repeat Simple_repeat 2 54 0 4 1209 411 73 0 0 chr3 81857666 81857720 -77742063 + (TG)n Simple_repeat Simple_repeat 2 56 0 4 1209 477 313 84 36 chr3 81858140 81858365 -77741418 + RMER5 LTR ERV1 33 268 -266 4 1209 372 267 56 28 chr3 81858347 81858455 -77741328 + RMER5 LTR ERV1 414 524 -10 4 1209 21 0 0 0 chr3 81859694 81859715 -77740068 + AT_rich Low_complexity Low_complexity 1 21 0 4 1209 850 307 111 24 chr3 81859833 81860330 -77739453 + Lx8 LINE L1 6729 7268 -205 4 1209 615 272 7 0 chr3 81860717 81860853 -77738930 + B3A SINE B2 1 137 -61 4 1209 378 0 0 0 chr3 81860853 81860895 -77738888 + (CA)n Simple_repeat Simple_repeat 1 42 0 4 1209 224 218 0 0 chr3 81861558 81861613 -77738170 + T-rich Low_complexity Low_complexity 4 58 0 4 1209 427 295 71 0 chr3 81862591 81862703 -77737080 + RSINE1 SINE B4 25 144 -21 4 1209 743 284 91 28 chr3 81863121 81863392 -77736391 + B4A SINE B4 1 288 -4 4 1209 1737 241 32 21 chr3 81863400 81863935 -77735848 + Lx9 LINE L1 7097 7637 -7 4 1209 23 33 0 0 chr3 81864067 81864097 -77735686 + AT_rich Low_complexity Low_complexity 1 30 0 4 1209 189 0 0 0 chr3 81864187 81864208 -77735575 + (TG)n Simple_repeat Simple_repeat 2 22 0 4 1209 219 36 0 0 chr3 81864662 81864690 -77735093 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 4 1209 305 305 25 17 chr3 81865296 81865416 -77734367 - L2a LINE L2 -15 3411 3291 4 1209 199 316 137 22 chr3 81865506 81865645 -77734138 - L2a LINE L2 -833 2586 2432 4 1209 333 0 0 0 chr3 81871165 81871202 -77728581 + (CA)n Simple_repeat Simple_repeat 2 38 0 4 1209 504 0 0 0 chr3 81871202 81871257 -77728526 + (GA)n Simple_repeat Simple_repeat 2 57 0 4 1209 48 32 0 0 chr3 81872526 81872588 -77727195 + AT_rich Low_complexity Low_complexity 1 62 0 4 1209 30 0 0 0 chr3 81872605 81872635 -77727148 + AT_rich Low_complexity Low_complexity 1 30 0 4 1209 558 0 0 0 chr3 81873621 81873683 -77726100 + (TTTC)n Simple_repeat Simple_repeat 3 64 0 4 1209 1179 88 0 0 chr3 81874213 81874441 -77725342 + (TG)n Simple_repeat Simple_repeat 1 228 0 4 1209 329 354 31 23 chr3 81875902 81876032 -77723751 + B1F2 SINE Alu 8 138 -11 4 1209 515 98 24 0 chr3 81876075 81876157 -77723626 + (TATG)n Simple_repeat Simple_repeat 3 86 0 4 1209 262 284 54 27 chr3 81877075 81877187 -77722596 + PB1D10 SINE Alu 2 116 -1 4 1209 236 313 0 0 chr3 81877187 81877254 -77722529 + ID4_ SINE ID 3 69 -14 4 1209 387 0 0 0 chr3 81878906 81878949 -77720834 + (TG)n Simple_repeat Simple_repeat 1 43 0 4 1209 204 97 0 0 chr3 81879239 81879270 -77720513 + (TTTTTG)n Simple_repeat Simple_repeat 6 36 0 4 1209 366 107 0 0 chr3 81879675 81879731 -77720052 + (TCCA)n Simple_repeat Simple_repeat 1 56 0 4 1209 834 207 0 0 chr3 81879789 81879968 -77719815 + CT-rich Low_complexity Low_complexity 1 179 0 4 1209 501 261 118 0 chr3 81879992 81880145 -77719638 + RMER15 LTR ERVL 405 575 0 4 1209 202 153 0 92 chr3 81880401 81880466 -77719317 + CT-rich Low_complexity Low_complexity 1 59 0 4 1209 210 171 0 0 chr3 81880592 81880633 -77719150 + CT-rich Low_complexity Low_complexity 4 44 0 4 1209 21 71 0 0 chr3 81881082 81881124 -77718659 + AT_rich Low_complexity Low_complexity 1 42 0 4 1209 398 304 98 90 chr3 81881127 81881167 -77718616 - BGLII_B LTR ERVK -27 500 451 4 1209 1712 196 12 0 chr3 81881167 81881489 -77718294 - ORR1A3 LTR MaLR 0 326 1 4 1209 428 275 55 99 chr3 81881489 81881942 -77717841 - BGLII_B LTR ERVK -77 450 6 4 1209 370 21 0 0 chr3 81882009 81882056 -77717727 + PB1D9 SINE Alu 2 48 -72 4 1209 458 291 122 34 chr3 81882488 81882726 -77717057 + Lx7 LINE L1 6706 6964 -732 4 1209 545 324 56 32 chr3 81882726 81882978 -77716805 - MTD LTR MaLR -161 258 1 4 1209 506 291 82 5 chr3 81883128 81883335 -77716448 + MER31A LTR ERV1 13 235 -250 4 1209 435 331 122 37 chr3 81884868 81885261 -77714522 + MLT1D LTR MaLR 1 490 -15 4 1209 297 347 66 7 chr3 81885314 81885465 -77714318 + MLT1A0 LTR MaLR 1 160 -214 4 1209 1182 278 101 12 chr3 81885519 81885857 -77713926 - ORR1D2 LTR MaLR 0 370 3 4 1209 391 269 84 14 chr3 81885863 81886006 -77713777 + MLT1A0 LTR MaLR 212 364 -1 4 1209 1574 162 102 22 chr3 81886489 81886804 -77712979 + RMER6C LTR ERVK 1 340 -350 5 1209 5195 60 15 47 chr3 81886804 81887585 -77712198 - L1Md_F2 LINE L1 -168 5715 4960 5 1209 6435 67 0 4 chr3 81887585 81888414 -77711369 + L1Md_F2 LINE L1 5754 6579 -3 5 1209 192 213 0 0 chr3 81888439 81888500 -77711283 + (CAGTT)n Simple_repeat Simple_repeat 2 62 0 5 1209 926 186 70 39 chr3 81888521 81888894 -77710889 + RMER6C LTR ERVK 472 720 0 5 1209 758 218 46 41 chr3 81891020 81891216 -77708567 + B3 SINE B2 2 198 -18 5 1209 254 327 19 19 chr3 81891418 81891524 -77708259 + MLT-int LTR MaLR 181 286 -1449 5 1209 207 0 0 0 chr3 81891957 81891980 -77707803 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 5 1209 483 18 0 0 chr3 81892517 81892573 -77707210 + (TG)n Simple_repeat Simple_repeat 1 56 0 5 1209 450 0 0 0 chr3 81892573 81892622 -77707161 + (GA)n Simple_repeat Simple_repeat 1 50 0 5 1209 327 25 0 0 chr3 81894033 81894073 -77705710 + (TG)n Simple_repeat Simple_repeat 1 40 0 5 1209 709 332 56 34 chr3 81894083 81894351 -77705432 - B4 SINE B4 -8 284 11 5 1209 7730 155 22 16 chr3 81894591 81896184 -77703599 - Lx2 LINE L1 -4 6993 5394 5 1209 314 185 23 23 chr3 81896166 81896281 -77703502 + L1VL2 LINE L1 443 557 -5801 5 1209 238 329 0 0 chr3 81896559 81896629 -77703154 - ID4 SINE ID -12 71 2 5 1209 291 28 0 0 chr3 81899182 81899218 -77700565 + (TTCA)n Simple_repeat Simple_repeat 1 36 0 5 1209 677 253 121 0 chr3 81899382 81899572 -77700211 - ID_B1 SINE B4 -9 215 3 5 1209 348 282 0 0 chr3 81899990 81900068 -77699715 - ID4_ SINE ID -1 82 5 5 1209 821 262 28 9 chr3 81900097 81900309 -77699474 - B3 SINE B2 0 216 1 5 1209 477 196 64 57 chr3 81900330 81900471 -77699312 - B1F1 SINE Alu -3 146 5 5 1209 236 289 92 46 chr3 81900934 81901021 -77698762 + MER21B LTR ERV1 375 465 -398 5 1209 328 355 9 0 chr3 81902074 81902181 -77697602 + PB1 SINE Alu 18 125 -2 5 1209 247 307 57 49 chr3 81902772 81902851 -77696932 + B4 SINE B4 6 136 -88 5 1209 275 160 0 138 chr3 81902851 81902909 -77696874 + PB1D9 SINE Alu 5 54 -66 5 1209 247 307 57 49 chr3 81902909 81902920 -77696863 + B4 SINE B4 137 157 -67 5 1209 753 246 0 0 chr3 81902924 81903103 -77696680 + (CAGG)n Simple_repeat Simple_repeat 1 179 0 5 1209 328 194 16 31 chr3 81903118 81903182 -77696601 + B1_Mur2 SINE Alu 42 104 -45 5 1209 231 295 105 0 chr3 81903197 81903302 -77696481 - RSINE1 SINE B4 -22 143 28 5 1209 200 111 0 27 chr3 81904239 81904276 -77695507 + (GAAAA)n Simple_repeat Simple_repeat 3 38 0 5 1209 1044 76 13 27 chr3 81904720 81904869 -77694914 + B1_Mus1 SINE Alu 2 148 0 5 1209 205 51 51 0 chr3 81904869 81904908 -77694875 + (CAAAA)n Simple_repeat Simple_repeat 1 41 0 5 1209 559 348 127 15 chr3 81905117 81905599 -77694184 + MLT1G LTR MaLR 1 575 -4 5 1209 705 276 0 40 chr3 81906403 81906603 -77693180 - B3A SINE B2 -5 193 2 5 1209 461 298 132 4 chr3 81907812 81908061 -77691722 + Lx8 LINE L1 7188 7468 -5 5 1209 198 103 0 0 chr3 81910664 81910693 -77689090 + (TC)n Simple_repeat Simple_repeat 2 30 0 5 1209 234 0 0 0 chr3 81910692 81910718 -77689065 + (T)n Simple_repeat Simple_repeat 1 26 0 5 1209 180 111 0 0 chr3 81910812 81910839 -77688944 + (TTTTC)n Simple_repeat Simple_repeat 5 31 0 5 1209 225 0 0 0 chr3 81911382 81911407 -77688376 + (CA)n Simple_repeat Simple_repeat 1 25 0 5 1209 360 0 0 0 chr3 81911886 81911926 -77687857 + (TC)n Simple_repeat Simple_repeat 2 41 0 5 1209 240 35 0 0 chr3 81911926 81911954 -77687829 + (TG)n Simple_repeat Simple_repeat 2 30 0 5 1209 370 219 62 9 chr3 81911972 81912079 -77687704 - RSINE1 SINE B4 -51 114 1 5 1209 742 287 40 20 chr3 81912079 81912278 -77687505 - ID_B1 SINE B4 -5 219 17 5 1209 194 100 25 0 chr3 81913681 81913708 -77686075 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 5 1209 261 0 0 0 chr3 81913708 81913737 -77686046 + (GTTTG)n Simple_repeat Simple_repeat 2 30 0 5 1209 194 100 25 0 chr3 81913737 81913749 -77686034 + (TTTG)n Simple_repeat Simple_repeat 2 13 0 5 1209 2232 209 109 2 chr3 81913858 81914444 -77685339 - Lx9 LINE L1 -8 7636 6988 5 1209 228 279 123 89 chr3 81915270 81915506 -77684277 + Helitron2Na_Mam RC Helitron? 17 260 -64 5 1209 297 0 0 0 chr3 81915957 81915990 -77683793 + (CA)n Simple_repeat Simple_repeat 2 34 0 5 1209 1084 61 0 0 chr3 81917306 81917438 -77682345 + B1_Mus1 SINE Alu 1 132 -16 5 1209 255 161 0 0 chr3 81917456 81917512 -77682271 + A-rich Low_complexity Low_complexity 1 56 0 5 1209 243 0 0 0 chr3 81919229 81919256 -77680527 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 5 151 331 308 148 39 chr3 81919858 81920061 -77679722 + RMER15 LTR ERVL 332 556 -19 5 1210 23 0 0 0 chr3 81920330 81920353 -77679430 + AT_rich Low_complexity Low_complexity 1 23 0 5 1210 869 285 43 43 chr3 81920737 81920994 -77678789 - B4 SINE B4 -35 257 1 5 1210 21 0 0 0 chr3 81921019 81921040 -77678743 + AT_rich Low_complexity Low_complexity 1 21 0 5 1210 531 308 56 68 chr3 81923476 81923728 -77676055 - RLTR18B LTR ERVK -28 588 232 5 1210 1110 67 0 0 chr3 81923728 81923863 -77675920 + B1_Mus1 SINE Alu 2 136 -12 5 1210 422 329 163 45 chr3 81923863 81924075 -77675708 - RLTR18B LTR ERVK -295 321 69 5 1210 210 24 70 23 chr3 81924105 81924148 -77675635 + (CAAA)n Simple_repeat Simple_repeat 3 47 0 5 1210 312 27 0 0 chr3 81924874 81924911 -77674872 + (TA)n Simple_repeat Simple_repeat 1 37 0 5 1210 2116 176 118 60 chr3 81925248 81925799 -77673984 + RMER4B LTR ERVK 1 583 -2 5 1210 2937 71 10 5 chr3 81926506 81926904 -77672879 + MTB LTR MaLR 1 400 0 5 1210 381 43 0 0 chr3 81928303 81928350 -77671433 + (CAA)n Simple_repeat Simple_repeat 2 48 0 5 1210 180 0 0 0 chr3 81928729 81928749 -77671034 + (TC)n Simple_repeat Simple_repeat 2 21 0 5 1210 395 304 182 11 chr3 81929450 81929713 -77670070 + Lx8 LINE L1 7166 7473 0 5 1210 22 0 0 0 chr3 81930612 81930634 -77669149 + AT_rich Low_complexity Low_complexity 1 22 0 5 1210 537 215 122 5 chr3 81932274 81932470 -77667313 + Lx9 LINE L1 7423 7641 -3 5 1210 245 216 0 0 chr3 81934193 81934244 -77665539 + L1ME1 LINE L1 4059 4109 -2037 5 1210 342 291 62 8 chr3 81934541 81934759 -77665024 + L1ME1 LINE L1 4466 4691 -1455 5 1210 260 324 0 35 chr3 81935039 81935154 -77664629 + GA-rich Low_complexity Low_complexity 5 115 0 5 1210 253 307 50 22 chr3 81935284 81935464 -77664319 + L1ME1 LINE L1 4900 5084 -1062 5 1210 347 286 11 0 chr3 81935728 81935819 -77663964 + (TG)n Simple_repeat Simple_repeat 1 92 0 5 1210 242 269 216 9 chr3 81935893 81936009 -77663774 - B1F SINE Alu 0 149 10 5 1210 348 299 102 11 chr3 81936051 81936237 -77663546 + L1ME1 LINE L1 5512 5714 -465 5 1210 329 342 71 29 chr3 81936357 81936595 -77663188 + L1ME1 LINE L1 5822 6069 -110 5 1210 425 221 229 10 chr3 81936844 81937036 -77662747 + Charlie1 DNA MER1_type 68 301 -2480 5 1210 345 269 113 61 chr3 81939786 81939901 -77659882 + B1F SINE Alu 29 149 0 5 1210 436 295 103 48 chr3 81940127 81940427 -77659356 - Tigger7 DNA MER2_type -9 2482 2243 5 1210 369 0 0 0 chr3 81940512 81940553 -77659230 + (TC)n Simple_repeat Simple_repeat 2 42 0 5 1210 567 0 0 0 chr3 81940553 81940615 -77659168 + (TG)n Simple_repeat Simple_repeat 2 64 0 5 1210 459 164 19 9 chr3 81941378 81941438 -77658345 + polypurine Low_complexity Low_complexity 3 63 0 5 1210 1464 39 0 0 chr3 81941438 81941617 -77658166 + (GGAGAA)n Simple_repeat Simple_repeat 2 180 0 5 1210 459 164 19 9 chr3 81941617 81941661 -77658122 + polypurine Low_complexity Low_complexity 64 108 0 5 1210 198 299 72 29 chr3 81942119 81942188 -77657595 + MIRm SINE MIR 157 228 -48 5 1210 291 221 40 7 chr3 81942678 81942766 -77657017 + B1F SINE Alu 11 103 -46 5 1210 265 289 67 50 chr3 81942766 81942798 -77656985 + ID_B1 SINE B4 92 213 -11 5 1210 1085 88 0 33 chr3 81942869 81943021 -77656762 + B1_Mm SINE Alu 1 147 0 5 1210 216 0 0 0 chr3 81943025 81943049 -77656734 + (A)n Simple_repeat Simple_repeat 1 24 0 5 1210 236 333 0 12 chr3 81943601 81943683 -77656100 + ID_B1 SINE B4 78 158 -66 5 1210 294 305 0 0 chr3 81943787 81943869 -77655914 + GA-rich Low_complexity Low_complexity 1 82 0 5 1210 24 0 0 0 chr3 81945627 81945651 -77654132 + AT_rich Low_complexity Low_complexity 1 24 0 5 1210 488 340 41 0 chr3 81945701 81945848 -77653935 + RSINE1 SINE B4 13 165 0 5 1210 493 271 101 27 chr3 81947435 81947789 -77651994 - L1MA4A LINE L1 -442 5861 5493 5 1210 549 0 0 0 chr3 81949840 81949901 -77649882 + (CA)n Simple_repeat Simple_repeat 2 62 0 5 1210 294 180 0 0 chr3 81950249 81950310 -77649473 + (CA)n Simple_repeat Simple_repeat 1 61 0 5 1210 297 0 0 0 chr3 81951310 81951343 -77648440 + (A)n Simple_repeat Simple_repeat 1 33 0 5 1210 565 316 38 34 chr3 81951908 81952412 -77647371 - L1M2 LINE L1 -2595 3548 3043 5 1210 226 140 17 34 chr3 81952417 81952476 -77647307 + CT-rich Low_complexity Low_complexity 1 58 0 5 1210 404 297 106 63 chr3 81952744 81952999 -77646784 + MLT1D LTR MaLR 149 414 -91 5 1210 488 339 143 19 chr3 81953053 81953570 -77646213 + MLT1D-int LTR MaLR 2 582 -789 5 1210 405 0 0 0 chr3 81953570 81953615 -77646168 + (TG)n Simple_repeat Simple_repeat 2 46 0 5 1210 301 198 10 10 chr3 81953624 81953721 -77646062 + GA-rich Low_complexity Low_complexity 2 98 0 5 1210 324 0 0 0 chr3 81953727 81953763 -77646020 + (TG)n Simple_repeat Simple_repeat 1 36 0 5 1210 315 0 0 0 chr3 81953763 81953797 -77645986 + (GA)n Simple_repeat Simple_repeat 1 35 0 5 1210 314 323 109 36 chr3 81953804 81953942 -77645841 - B4A SINE B4 0 292 145 5 1210 245 146 0 0 chr3 81953958 81953999 -77645784 - B4A SINE B4 -206 86 46 5 1210 4503 131 52 12 chr3 81954039 81954773 -77645010 + Lx2 LINE L1 6235 6997 0 5 1210 324 0 0 0 chr3 81955037 81955073 -77644710 + (TC)n Simple_repeat Simple_repeat 2 37 0 5 1210 423 0 0 0 chr3 81955073 81955119 -77644664 + (TA)n Simple_repeat Simple_repeat 2 48 0 5 1210 234 0 0 0 chr3 81955123 81955149 -77644634 + (CA)n Simple_repeat Simple_repeat 1 26 0 6 1210 721 219 101 39 chr3 81955177 81955379 -77644404 - B3 SINE B2 0 195 4 6 1210 300 314 0 0 chr3 81955388 81955458 -77644325 - ID4 SINE ID -2 81 12 6 1210 283 307 68 19 chr3 81955716 81955819 -77643964 - MIRc SINE MIR -110 158 51 6 1210 286 186 0 23 chr3 81956503 81956591 -77643192 + GA-rich Low_complexity Low_complexity 1 86 0 6 1210 2718 233 92 68 chr3 81957352 81959116 -77640667 - Lx4B LINE L1 -5 7455 5291 6 1210 534 31 0 0 chr3 81959167 81959231 -77640552 + (GA)n Simple_repeat Simple_repeat 2 65 0 6 1210 1303 159 44 48 chr3 81959232 81959548 -77640235 + L1_Mur2 LINE L1 1205 1519 -4358 6 1210 356 317 87 92 chr3 81960977 81961072 -77638711 - MTE2b LTR MaLR 0 379 295 6 1210 626 265 47 21 chr3 81961072 81961265 -77638518 + B3A SINE B2 1 198 0 6 1210 356 317 87 92 chr3 81961265 81961398 -77638385 - MTE2b LTR MaLR -85 294 152 6 1210 337 308 74 61 chr3 81961500 81961797 -77637986 + L1MEd LINE L1 799 1099 -5020 6 1210 451 285 52 44 chr3 81961928 81962064 -77637719 - ID_B1 SINE B4 -4 220 84 6 1210 240 200 0 0 chr3 81962262 81962312 -77637471 + A-rich Low_complexity Low_complexity 1 50 0 6 1210 1326 212 56 74 chr3 81962972 81963349 -77636434 + ORR1D1 LTR MaLR 2 371 -3 6 1210 234 91 0 0 chr3 81963374 81963407 -77636376 + (TAGA)n Simple_repeat Simple_repeat 2 34 0 6 1210 326 274 7 75 chr3 81963414 81963560 -77636223 - L1_Rod LINE L1 -11 5836 5701 6 1210 191 333 43 0 chr3 81966294 81966363 -77633420 - L2c LINE L2 -72 3315 3244 6 1210 6100 75 8 0 chr3 81966462 81967252 -77632531 + L1_Mus2 LINE L1 5771 6566 0 6 1210 279 251 66 76 chr3 81968335 81968544 -77631239 - MLT1D LTR MaLR -21 484 229 6 1210 354 45 0 0 chr3 81969110 81969154 -77630629 + (TTA)n Simple_repeat Simple_repeat 2 45 0 6 1210 567 222 138 7 chr3 81969505 81969650 -77630133 + Lx5 LINE L1 6617 6780 -270 6 1210 276 53 0 0 chr3 81970759 81970797 -77628986 + (TTCA)n Simple_repeat Simple_repeat 3 40 0 6 1210 1237 233 25 29 chr3 81970797 81971130 -77628653 - Lx6 LINE L1 -137 7559 6967 6 1210 505 122 101 10 chr3 81971129 81971228 -77628555 + L1_Mur3 LINE L1 5017 5124 -756 6 1210 571 71 10 10 chr3 81971961 81972060 -77627723 + (CA)n Simple_repeat Simple_repeat 2 100 0 6 1210 31 58 0 0 chr3 81972349 81972401 -77627382 + AT_rich Low_complexity Low_complexity 1 52 0 6 1210 286 248 137 0 chr3 81973411 81973528 -77626255 - L1MC3 LINE L1 -371 7414 7282 6 1210 1735 309 50 45 chr3 81973728 81974594 -77625189 - Lx8 LINE L1 -2 7471 6602 6 1210 933 225 42 0 chr3 81974602 81974793 -77624990 + URR1B DNA MER1_type 1 199 -26 6 1210 1249 276 59 13 chr3 81974805 81975197 -77624586 - Lx8 LINE L1 -873 6600 6191 6 1210 317 209 11 0 chr3 81975293 81975384 -77624399 - L1MCa LINE L1 -2846 3718 3627 6 1210 302 206 14 42 chr3 81975443 81975514 -77624269 - MLT1A1 LTR MaLR -41 367 299 6 1210 485 255 33 19 chr3 81975898 81976027 -77623756 - B1_Mur1 SINE Alu -8 141 7 6 1210 330 275 79 24 chr3 81976028 81976192 -77623591 - L1MCa LINE L1 -3722 2842 2670 6 1210 2900 168 30 19 chr3 81976556 81976730 -77623053 + RLTR20A LTR ERVK 1 172 -369 6 1210 807 64 0 0 chr3 81976730 81976840 -77622943 + (GA)n Simple_repeat Simple_repeat 1 110 0 6 1210 2900 168 30 19 chr3 81976840 81977200 -77622583 + RLTR20A LTR ERVK 173 540 -1 6 1210 434 260 27 142 chr3 81977350 81977498 -77622285 - B1_Mur1 SINE Alu 0 149 19 6 1210 402 286 91 16 chr3 81977889 81978134 -77621649 - L1MCa LINE L1 -5441 1310 965 6 1210 381 359 137 47 chr3 81978257 81978996 -77620787 - L1MCa LINE L1 -5240 805 1 6 1210 23 0 0 53 chr3 81980076 81980098 -77619685 + AT_rich Low_complexity Low_complexity 1 22 0 6 1210 4659 85 6 12 chr3 81980098 81980753 -77619030 - L1_Mus3 LINE L1 -2 6636 5986 6 1210 23 0 0 53 chr3 81980753 81980768 -77619015 + AT_rich Low_complexity Low_complexity 1 14 0 6 1210 216 277 21 0 chr3 81981044 81981091 -77618692 + ID4_ SINE ID 36 83 0 6 1210 664 271 17 11 chr3 81981225 81981404 -77618379 + B3A SINE B2 1 180 -18 6 1210 624 181 0 0 chr3 81981435 81981606 -77618177 + GA-rich Low_complexity Low_complexity 2 172 0 6 1210 282 125 0 0 chr3 81981608 81981656 -77618127 + (GA)n Simple_repeat Simple_repeat 1 48 0 6 1210 397 267 61 28 chr3 81981718 81981930 -77617853 + L1MC3 LINE L1 6961 7179 -606 6 1210 459 0 0 0 chr3 81982430 81982481 -77617302 + (TA)n Simple_repeat Simple_repeat 1 51 0 6 1210 1489 247 13 8 chr3 81982572 81982944 -77616839 - ORR1D1 LTR MaLR 0 374 1 6 1210 892 333 30 62 chr3 81983393 81983764 -77616019 + MTEa LTR MaLR 21 379 0 6 1210 249 57 0 0 chr3 81983822 81983857 -77615926 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 6 1210 516 111 0 0 chr3 81986775 81986865 -77612918 + (GA)n Simple_repeat Simple_repeat 1 90 0 6 1210 272 274 133 25 chr3 81986904 81987024 -77612759 - ORR1E LTR MaLR -226 133 1 6 1210 404 82 16 0 chr3 81987305 81987366 -77612417 + (CA)n Simple_repeat Simple_repeat 2 63 0 6 1210 458 68 22 22 chr3 81989229 81989319 -77610464 + (TA)n Simple_repeat Simple_repeat 2 91 0 6 1210 241 320 26 0 chr3 81990088 81990166 -77609617 - ID4 SINE ID -2 81 2 6 1210 282 315 15 23 chr3 81990870 81991000 -77608783 + CT-rich Low_complexity Low_complexity 2 130 0 6 1210 2354 273 16 57 chr3 81992911 81993743 -77606040 + Lx7 LINE L1 6557 7354 -342 6 1210 204 206 43 29 chr3 81993764 81993834 -77605949 + T-rich Low_complexity Low_complexity 3 73 0 6 1210 612 300 45 62 chr3 81994273 81994497 -77605286 + ORR1E LTR MaLR 93 312 -47 6 1210 313 253 48 48 chr3 81995092 81995175 -77604608 - ID2 SINE ID 0 83 1 6 1210 219 290 97 0 chr3 81996237 81996299 -77603484 - PB1D10 SINE Alu -8 109 42 6 1210 9537 183 48 28 chr3 82000480 82001697 -77598086 + Lx6 LINE L1 2066 3314 -2566 1 1210 7261 54 12 7 chr3 82001697 82002616 -77597167 + L1Md_F2 LINE L1 5657 6580 -2 2 1210 9537 183 48 28 chr3 82002616 82003172 -77596611 + Lx6 LINE L1 3315 3911 -1969 1 1210 2054 40 0 0 chr3 82003172 82003419 -77596364 - L1Md_F3 LINE L1 -14 6570 6324 3 1210 9537 183 48 28 chr3 82003419 82003953 -77595830 + Lx6 LINE L1 3912 4420 -1460 1 1210 1001 105 7 0 chr3 82003970 82004123 -77595660 + (GGAA)n Simple_repeat Simple_repeat 3 156 0 4 1210 3171 231 57 35 chr3 82004130 82006253 -77593530 + Lx6 LINE L1 4963 7433 -27 1 1210 1091 124 6 0 chr3 82006406 82006583 -77593200 + (GGAAA)n Simple_repeat Simple_repeat 2 179 0 5 1210 252 128 0 21 chr3 82006583 82006622 -77593161 + L1_Mm LINE L1 1265 1303 -4580 6 1210 4355 83 2 23 chr3 82006626 82007239 -77592544 + L1Md_F2 LINE L1 5983 6582 0 7 1210 198 103 0 0 chr3 82007282 82007311 -77592472 + (A)n Simple_repeat Simple_repeat 1 29 0 8 1210 1214 198 146 7 chr3 82007311 82007591 -77592192 - ORR1D1 LTR MaLR -55 319 1 9 1210 1309 271 51 8 chr3 82008014 82008367 -77591416 - ORR1D2 LTR MaLR 0 370 3 1 1210 974 287 59 56 chr3 82008374 82008835 -77590948 + MT2A LTR ERVL 1 462 -71 1 1210 299 309 25 0 chr3 82010495 82010576 -77589207 - ID SINE ID -141 83 1 1 1210 921 260 54 47 chr3 82011184 82011535 -77588248 - ORR1E LTR MaLR 0 419 12 1 1210 4324 14 0 0 chr3 82011535 82012021 -77587762 - L1Md_A LINE L1 0 6582 6097 1 1210 3057 6 0 0 chr3 82012021 82012378 -77587405 + L1_Mm LINE L1 4578 4934 -949 1 1210 5196 60 0 6 chr3 82012399 82013059 -77586724 - L1_Mus2 LINE L1 -1 6565 5910 1 1210 304 257 0 66 chr3 82013252 82013373 -77586410 - Lx2B LINE L1 0 7000 6888 1 1210 284 362 0 0 chr3 82014247 82014327 -77585456 - B4 SINE B4 -132 160 81 1 1210 257 0 30 0 chr3 82014369 82014402 -77585381 + (TTTTA)n Simple_repeat Simple_repeat 5 38 0 1 1210 896 249 15 20 chr3 82014405 82014606 -77585177 - ID_B1 SINE B4 -12 212 13 2 1210 30 0 0 0 chr3 82015610 82015640 -77584143 + AT_rich Low_complexity Low_complexity 1 30 0 2 1210 672 308 29 25 chr3 82015707 82015947 -77583836 - Lx8 LINE L1 -122 7351 7111 2 1210 250 282 63 13 chr3 82015955 82016034 -77583749 + L2b LINE L2 3292 3374 -1 2 1210 497 305 61 17 chr3 82016110 82016340 -77583443 - Lx8 LINE L1 -356 7117 6878 2 1210 647 267 183 19 chr3 82016335 82016753 -77583030 - Lx8 LINE L1 -734 6739 6225 2 1210 405 0 0 0 chr3 82016870 82016915 -77582868 + (TG)n Simple_repeat Simple_repeat 2 46 0 2 1210 1150 266 23 0 chr3 82016921 82017229 -77582554 - Lx6 LINE L1 -18 7442 7128 2 1210 291 28 0 0 chr3 82017469 82017505 -77582278 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 2 1210 379 320 119 36 chr3 82017544 82017797 -77581986 + B4A SINE B4 3 276 -16 2 1210 785 276 36 0 chr3 82019289 82019485 -77580298 - B3 SINE B2 -5 211 9 2 1210 504 0 0 0 chr3 82021141 82021197 -77578586 + (GA)n Simple_repeat Simple_repeat 1 56 0 2 1210 737 275 0 60 chr3 82021365 82021566 -77578217 + MTC-int LTR MaLR 380 568 -690 3 1210 572 261 86 67 chr3 82021742 82021951 -77577832 - MTC-int LTR MaLR -442 816 604 3 1210 23 68 0 0 chr3 82022327 82022371 -77577412 + AT_rich Low_complexity Low_complexity 1 44 0 3 1210 198 291 67 79 chr3 82022602 82022766 -77577017 - L2a LINE L2 -317 3109 2948 3 1210 640 107 197 0 chr3 82023746 82023868 -77575915 + ORR1B1 LTR MaLR 1 146 -248 3 1210 868 152 262 8 chr3 82023880 82023944 -77575839 - RLTR25A LTR ERVK -93 1010 907 3 1210 672 77 0 0 chr3 82023944 82024035 -77575748 + (TC)n Simple_repeat Simple_repeat 1 91 0 3 1210 459 0 0 0 chr3 82024044 82024095 -77575688 + (TG)n Simple_repeat Simple_repeat 2 52 0 3 1210 3538 149 139 94 chr3 82024095 82024858 -77574925 - RLTR25A LTR ERVK -218 885 9 3 1210 1369 157 4 46 chr3 82024863 82025103 -77574680 + ORR1B1 LTR MaLR 164 393 -1 3 1210 454 323 127 47 chr3 82025281 82025619 -77574164 + MLT1A0 LTR MaLR 1 365 0 3 1210 378 0 0 0 chr3 82026235 82026277 -77573506 + (TC)n Simple_repeat Simple_repeat 2 43 0 3 1210 291 113 0 0 chr3 82026277 82026329 -77573454 + (TG)n Simple_repeat Simple_repeat 2 54 0 4 1210 469 269 62 28 chr3 82026590 82026766 -77573017 - B3A SINE B2 -16 182 1 4 1210 22 35 0 0 chr3 82027321 82027350 -77572433 + AT_rich Low_complexity Low_complexity 1 29 0 4 1210 366 355 113 41 chr3 82027380 82027671 -77572112 + ORR1E LTR MaLR 1 312 -47 4 1210 796 261 202 12 chr3 82027948 82028289 -77571494 - MER57D LTR ERV1 -5 406 1 4 1210 266 356 52 26 chr3 82028317 82028470 -77571313 - MT2B2 LTR ERVL 0 584 428 4 1210 255 343 28 19 chr3 82028451 82028558 -77571225 - MTEa LTR MaLR -260 119 12 4 1210 559 303 58 38 chr3 82028884 82029145 -77570638 - Charlie12 DNA MER1_type -5 2868 2603 4 1210 725 293 57 74 chr3 82029208 82029558 -77570225 - Charlie12 DNA MER1_type -407 2466 2123 4 1210 308 213 29 87 chr3 82029586 82029689 -77570094 + Charlie12 DNA MER1_type 1749 1845 -1028 4 1210 751 316 51 29 chr3 82029696 82030070 -77569713 - Charlie12 DNA MER1_type -792 2081 1700 4 1210 1276 184 9 0 chr3 82030070 82030293 -77569490 + URR1B DNA MER1_type 1 225 0 4 1210 1298 307 118 65 chr3 82030294 82031157 -77568626 - Charlie12 DNA MER1_type -1167 1706 798 4 1210 9922 127 8 70 chr3 82031157 82032291 -77567492 - L1_Mus3 LINE L1 -58 5825 4733 5 1210 309 154 0 0 chr3 82032291 82032343 -77567440 - U2 snRNA snRNA -136 52 1 5 1210 9922 127 8 70 chr3 82032343 82033040 -77566743 - L1_Mus3 LINE L1 -58 4732 4060 5 1210 5962 78 2 1 chr3 82033040 82033826 -77565957 + L1_Mus3 LINE L1 5840 6626 -12 5 1210 567 189 134 0 chr3 82033830 82033994 -77565789 - Charlie12 DNA MER1_type -2055 818 633 4 1210 420 288 52 135 chr3 82034856 82035145 -77564638 + MLT1E LTR MaLR 387 651 -2 5 1210 3892 45 19 0 chr3 82035682 82036148 -77563635 - MT2C_Mm LTR ERVL 0 475 1 5 1210 254 400 59 0 chr3 82036194 82036329 -77563454 - ID_B1 SINE B4 -1 223 81 5 1210 452 234 74 20 chr3 82036532 82036622 -77563161 + L1MA4 LINE L1 5741 5830 -470 5 1210 1734 231 45 163 chr3 82036622 82037315 -77562468 + RMER19C LTR ERVK 1 611 0 5 1210 452 234 74 20 chr3 82037315 82037372 -77562411 + L1MA4 LINE L1 5831 5895 -405 5 1210 1464 266 97 76 chr3 82037962 82038797 -77560986 + MTD-int LTR MaLR 272 1258 0 5 1210 1268 277 47 3 chr3 82038797 82039117 -77560666 + MTD LTR MaLR 10 343 -76 5 1210 393 293 29 29 chr3 82039168 82039305 -77560478 - ORR1E-int LTR MaLR -1443 137 1 5 1210 980 295 67 15 chr3 82039309 82039636 -77560147 - ORR1E LTR MaLR -6 353 10 5 1210 934 274 9 23 chr3 82039799 82040016 -77559767 - B3 SINE B2 -1 215 2 5 1210 286 353 58 99 chr3 82040049 82040272 -77559511 + B4 SINE B4 3 216 -76 6 1210 198 0 0 0 chr3 82041540 82041562 -77558221 + (T)n Simple_repeat Simple_repeat 1 22 0 6 1210 288 0 0 0 chr3 82042357 82042389 -77557394 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 6 1210 277 299 32 0 chr3 82043049 82043146 -77556637 + MIRb SINE MIR 164 267 -1 6 1210 189 299 90 120 chr3 82043326 82043493 -77556290 + MIRc SINE MIR 102 263 -5 6 1210 362 212 0 0 chr3 82043743 82043823 -77555960 + B3A SINE B2 1 80 -115 6 1210 239 127 15 45 chr3 82043823 82043889 -77555894 + (CATATA)n Simple_repeat Simple_repeat 6 69 0 6 1210 434 286 51 29 chr3 82043889 82044026 -77555757 + B3 SINE B2 77 216 0 6 1210 2719 214 103 85 chr3 82044456 82045346 -77554437 - RMER17A2 LTR ERVK 0 906 1 6 1210 793 118 40 69 chr3 82045784 82045957 -77553826 + RMER1C Other Other 1171 1338 -4 6 1210 191 232 11 0 chr3 82046666 82046715 -77553068 - MIR SINE MIR -108 100 48 6 1210 207 0 0 0 chr3 82048030 82048053 -77551730 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 7 1210 226 358 30 50 chr3 82048277 82048377 -77551406 + ORR1D1 LTR MaLR 5 102 -257 7 1210 6040 45 0 0 chr3 82048377 82049149 -77550634 - L1Md_F2 LINE L1 0 5883 5112 7 1210 5494 51 3 9 chr3 82049149 82049838 -77549945 + L1Md_F2 LINE L1 5883 6567 -15 7 1210 347 314 71 17 chr3 82050118 82050358 -77549425 + L1_Mur3 LINE L1 557 809 -6903 7 1210 566 232 26 42 chr3 82050699 82050888 -77548895 + L1_Mur3 LINE L1 822 1007 -6705 7 151 3883 123 29 19 chr3 82050888 82051517 -77548266 + ORR1A2-int LTR MaLR 1329 1963 0 7 1211 2005 144 3 58 chr3 82051517 82051863 -77547920 + ORR1A2 LTR MaLR 1 327 0 7 1211 248 208 0 111 chr3 82051863 82051874 -77547909 + ORR1D1 LTR MaLR 69 77 -307 7 1211 337 294 233 0 chr3 82051897 82052060 -77547723 + ORR1D1 LTR MaLR 131 331 -43 7 1211 234 0 0 0 chr3 82054442 82054468 -77545315 + (CA)n Simple_repeat Simple_repeat 2 27 0 7 1211 277 285 74 68 chr3 82055874 82055929 -77543854 + MT2B2 LTR ERVL 116 171 -413 7 1211 697 158 118 0 chr3 82055929 82056056 -77543727 + B1_Mur4 SINE Alu 2 143 -7 7 1211 24 32 0 0 chr3 82056056 82056087 -77543696 + AT_rich Low_complexity Low_complexity 1 31 0 7 1211 35 63 0 0 chr3 82056189 82056252 -77543531 + AT_rich Low_complexity Low_complexity 1 63 0 7 1211 1429 250 44 33 chr3 82056586 82057045 -77542738 + L1VL4 LINE L1 256 719 -5583 8 1211 4724 143 88 7 chr3 82057038 82057911 -77541872 + Lx2B LINE L1 4186 5129 -748 8 1211 1987 80 0 89 chr3 82057908 82058222 -77541561 - L1_Mus4 LINE L1 -229 6407 6122 8 1211 1494 93 0 23 chr3 82058222 82058441 -77541342 + L1_Mus4 LINE L1 6420 6633 -3 8 1211 8571 134 40 6 chr3 82058443 82060255 -77539528 + Lx2B LINE L1 5117 6995 -5 8 1211 595 185 145 34 chr3 82060767 82060946 -77538837 + MTC-int LTR MaLR 1060 1258 0 8 1211 2151 180 37 56 chr3 82060946 82061375 -77538408 + MTC LTR MaLR 1 421 0 8 1211 489 128 35 0 chr3 82061696 82061782 -77538001 - ORR1A2 LTR MaLR -238 89 1 8 1211 207 0 0 0 chr3 82062694 82062717 -77537066 + (TTG)n Simple_repeat Simple_repeat 2 24 0 8 1211 503 143 0 0 chr3 82062717 82062787 -77536996 - B1_Mus2 SINE Alu -9 138 69 8 1211 794 233 175 31 chr3 82063086 82063343 -77536440 + RMER20B LTR ERVK 234 527 -100 8 1211 471 222 0 0 chr3 82063749 82063866 -77535917 + GA-rich Low_complexity Low_complexity 2 118 0 8 1211 1009 304 83 14 chr3 82064408 82064854 -77534929 + RMER5 LTR ERV1 58 534 0 8 1211 28 48 0 0 chr3 82065811 82065853 -77533930 + AT_rich Low_complexity Low_complexity 1 42 0 9 1211 450 325 8 0 chr3 82066611 82066731 -77533052 + B1F SINE Alu 23 143 -6 9 1211 3160 72 26 3 chr3 82067416 82067807 -77531976 - MTB LTR MaLR 0 400 1 9 1211 6733 120 3 130 chr3 82067807 82069064 -77530719 - MTB-int LTR MaLR 0 1098 1 9 1211 3062 90 26 3 chr3 82069064 82069454 -77530329 - MTB LTR MaLR 0 400 2 9 1211 1072 302 82 37 chr3 82069703 82070081 -77529702 + MTD LTR MaLR 25 419 0 9 1211 681 294 98 17 chr3 82070144 82070343 -77529440 + L1_Rod LINE L1 903 1122 -6486 9 1211 360 0 0 0 chr3 82070343 82070383 -77529400 + (GA)n Simple_repeat Simple_repeat 1 40 0 9 1211 681 298 94 22 chr3 82070383 82070851 -77528932 + L1_Rod LINE L1 1123 1626 -4221 9 1211 216 0 0 0 chr3 82070851 82070875 -77528908 + (CA)n Simple_repeat Simple_repeat 1 24 0 9 1211 499 302 90 26 chr3 82070875 82070928 -77528855 + L1_Rod LINE L1 1627 1685 -4162 9 1211 327 295 9 26 chr3 82071197 82071312 -77528471 + L1M2 LINE L1 3014 3126 -3017 9 1211 583 218 116 36 chr3 82071338 82071476 -77528307 + B1_Mur2 SINE Alu 1 149 0 9 1211 216 0 0 0 chr3 82071484 82071508 -77528275 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 9 1211 285 305 72 20 chr3 82071509 82071682 -77528101 + Lx8 LINE L1 4450 4634 -1246 1 1211 693 285 108 39 chr3 82071695 82072177 -77527606 + Lx8 LINE L1 4836 5350 -530 1 1211 1738 211 87 3 chr3 82072182 82072529 -77527254 - Lx6 LINE L1 0 7460 7085 1 1211 3089 216 19 17 chr3 82072507 82073152 -77526631 - Lx6 LINE L1 -1005 6455 5810 1 1211 2395 308 55 61 chr3 82073153 82074694 -77525089 + Lx8 LINE L1 5332 6926 -547 1 1211 682 208 8 0 chr3 82075084 82075204 -77524579 - RSINE1 SINE B4 -20 145 25 1 1211 802 222 6 35 chr3 82075206 82075379 -77524404 - Lx8 LINE L1 -1006 6467 6300 1 1211 564 307 108 78 chr3 82075502 82075777 -77524006 + L1_Rod LINE L1 4930 5205 -642 1 1211 1088 128 6 0 chr3 82075777 82075956 -77523827 + (GAA)n Simple_repeat Simple_repeat 1 180 0 1 1211 564 307 108 78 chr3 82075956 82076432 -77523351 + L1_Rod LINE L1 5206 5703 -144 1 1211 963 254 88 83 chr3 82077056 82077443 -77522340 + RMER13A LTR ERVK 1 389 -471 1 1211 592 128 168 0 chr3 82078090 82078215 -77521568 + ORR1B1 LTR MaLR 1 146 -248 1 1211 842 145 7 21 chr3 82078216 82078357 -77521426 - RLTR25A LTR ERVK 0 1103 965 1 1211 711 62 0 0 chr3 82078366 82078463 -77521320 + (TC)n Simple_repeat Simple_repeat 1 97 0 1 1211 220 243 93 59 chr3 82080352 82080470 -77519313 + L3 LINE CR1 4090 4211 -278 1 1211 349 336 84 54 chr3 82080526 82080674 -77519109 + ORR1E LTR MaLR 4 154 -205 1 1211 1057 267 198 27 chr3 82080674 82081124 -77518659 - MT2A LTR ERVL -3 530 4 1 1211 349 336 84 54 chr3 82081124 82081271 -77518512 + ORR1E LTR MaLR 155 308 -51 1 1211 589 246 22 15 chr3 82081361 82081497 -77518286 - MTD LTR MaLR 0 419 283 1 1211 375 364 25 31 chr3 82081493 82081652 -77518131 - MTD LTR MaLR -256 163 6 1 1211 15407 70 1 1 chr3 82082166 82084145 -77515638 + L1Md_F2 LINE L1 3608 5586 -297 1 1211 8373 55 0 11 chr3 82084145 82085139 -77514644 + L1Md_F2 LINE L1 5587 6569 -13 1 1211 564 298 158 20 chr3 82085491 82085744 -77514039 - B4A SINE B4 -2 290 3 1 1211 1308 36 0 0 chr3 82085809 82085975 -77513808 + (TCTCCC)n Simple_repeat Simple_repeat 3 168 0 1 1211 228 238 0 0 chr3 82087022 82087064 -77512719 + RSINE1 SINE B4 5 46 -119 1 1211 276 126 146 0 chr3 82087096 82087199 -77512584 + (CATAT)n Simple_repeat Simple_repeat 3 120 0 1 1211 4657 14 4 0 chr3 82087287 82087778 -77512005 - MT2_Mm LTR ERVL 0 493 1 1 1211 322 0 0 0 chr3 82087778 82087816 -77511967 - MERVL-int LTR ERVL 0 5485 5448 1 1211 387 167 46 35 chr3 82087816 82087903 -77511880 - ORR1A3-int LTR MaLR -1323 640 553 1 1211 19044 21 1 0 chr3 82087903 82090023 -77509760 - MERVL-int LTR ERVL -125 5360 3240 1 1211 12225 10 35 0 chr3 82090016 82092084 -77507699 - MERVL-int LTR ERVL -3345 2140 1 1 1211 4657 14 4 0 chr3 82092084 82092575 -77507208 - MT2_Mm LTR ERVL 0 493 1 1 1211 889 285 175 17 chr3 82092794 82093274 -77506509 + Lx8 LINE L1 6918 7473 0 1 1211 294 303 89 38 chr3 82095228 82095386 -77504397 - MLT1C LTR MaLR -194 273 108 1 1211 21 0 0 0 chr3 82095874 82095895 -77503888 + AT_rich Low_complexity Low_complexity 1 21 0 1 1211 261 16 46 62 chr3 82096851 82096916 -77502867 + (CAAA)n Simple_repeat Simple_repeat 1 64 0 1 1211 1221 100 0 0 chr3 82097246 82097489 -77502294 + (GGGAGA)n Simple_repeat Simple_repeat 1 243 0 1 1211 252 301 0 27 chr3 82097630 82097705 -77502078 + L2 LINE L2 1761 1833 -1586 1 1211 24 32 0 0 chr3 82098152 82098183 -77501600 + AT_rich Low_complexity Low_complexity 1 31 0 1 1211 7582 76 3 7 chr3 82098450 82099443 -77500340 - L1_Mus3 LINE L1 -4 6634 5646 1 1211 3909 117 16 5 chr3 82099417 82100019 -77499764 + L1_Mus3 LINE L1 5041 5646 -920 1 1211 358 239 18 9 chr3 82100735 82100845 -77498938 - Lx9 LINE L1 -32 7612 7502 1 1211 4635 171 30 135 chr3 82100848 82101998 -77497785 - RMER1A Other Other 0 1030 1 1 1211 1827 249 22 45 chr3 82102000 82102581 -77497202 - RMER1B Other Other -539 527 7 1 1211 2018 167 40 8 chr3 82102864 82103215 -77496568 - ORR1B2 LTR MaLR -5 362 1 1 1211 1654 173 46 0 chr3 82103215 82103521 -77496262 - Lx9 LINE L1 -133 7511 7192 1 1211 564 84 0 0 chr3 82103762 82103845 -77495938 + (GA)n Simple_repeat Simple_repeat 2 84 0 1 1211 258 247 44 56 chr3 82103957 82104047 -77495736 - LTR45C LTR ERV1 -4 535 447 1 1211 334 250 109 18 chr3 82104354 82104464 -77495319 + MTE2b LTR MaLR 56 175 -204 1 1211 9871 98 24 6 chr3 82104836 82107077 -77492706 - L1_Mus3 LINE L1 -1 6637 4364 1 1211 231 36 0 0 chr3 82107410 82107438 -77492345 + (TTGG)n Simple_repeat Simple_repeat 2 29 0 1 1211 1866 176 96 9 chr3 82107521 82107865 -77491918 - ORR1D1 LTR MaLR 0 374 1 1 1211 452 99 14 0 chr3 82107906 82107977 -77491806 + (TA)n Simple_repeat Simple_repeat 1 72 0 1 1211 298 340 42 51 chr3 82109171 82109427 -77490356 - MTEb LTR MaLR -23 356 86 1 1211 909 185 0 0 chr3 82110237 82110415 -77489368 + GA-rich Low_complexity Low_complexity 3 180 0 1 1211 351 44 0 0 chr3 82110837 82110882 -77488901 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 1211 840 137 0 0 chr3 82112136 82112275 -77487508 + (TA)n Simple_repeat Simple_repeat 2 140 0 1 1211 231 36 0 0 chr3 82112353 82112381 -77487402 + (CTAG)n Simple_repeat Simple_repeat 4 31 0 1 1211 195 42 0 0 chr3 82112527 82112551 -77487232 + (CAG)n Simple_repeat Simple_repeat 3 26 0 1 1211 498 139 0 0 chr3 82113690 82113776 -77486007 + (CATA)n Simple_repeat Simple_repeat 4 89 0 1 1211 2268 92 18 59 chr3 82113776 82114113 -77485670 - ORR1A2 LTR MaLR 0 327 5 1 1211 219 36 0 0 chr3 82114116 82114144 -77485639 + (CATA)n Simple_repeat Simple_repeat 4 31 0 1 1211 354 286 9 0 chr3 82114146 82114258 -77485525 + (CA)n Simple_repeat Simple_repeat 2 114 0 1 1211 21 0 0 0 chr3 82114958 82114979 -77484804 + AT_rich Low_complexity Low_complexity 1 21 0 1 1211 182 272 79 95 chr3 82115231 82115357 -77484426 + L2a LINE L2 3302 3425 -1 1 1211 1130 280 78 37 chr3 82117608 82118214 -77481569 + L1MC1 LINE L1 5649 6313 -20 1 1211 1012 295 61 19 chr3 82118285 82118662 -77481121 - MER95 LTR ERV -10 421 29 1 1211 24 53 0 0 chr3 82118812 82118850 -77480933 + AT_rich Low_complexity Low_complexity 1 38 0 1 1211 357 122 27 13 chr3 82118978 82119053 -77480730 + (CATATA)n Simple_repeat Simple_repeat 3 78 0 1 1211 283 344 106 6 chr3 82119236 82119397 -77480386 - Charlie1a DNA MER1_type -561 894 718 1 1211 198 0 0 0 chr3 82119684 82119706 -77480077 + (T)n Simple_repeat Simple_repeat 1 22 0 1 1211 414 0 0 0 chr3 82120689 82120735 -77479048 + (TG)n Simple_repeat Simple_repeat 1 46 0 1 1211 569 287 9 0 chr3 82120745 82120860 -77478923 - RSINE1 SINE B4 -16 149 34 1 1211 429 373 99 20 chr3 82121019 82121361 -77478422 - L1MDa LINE L1 -6224 409 41 1 1211 194 0 0 37 chr3 82121378 82121405 -77478378 + (TTTTG)n Simple_repeat Simple_repeat 4 29 0 1 1211 30016 97 4 5 chr3 82123109 82127317 -77472466 - L1_Mus1 LINE L1 -1 6566 2364 1 1211 2706 209 60 68 chr3 82127317 82128179 -77471604 + RLTR13A LTR ERVK 1 855 0 1 1211 30016 106 3 4 chr3 82128179 82129472 -77470311 - L1_Mus1 LINE L1 -3520 2363 1070 1 1211 592 287 32 96 chr3 82129648 82129732 -77470051 + B4A SINE B4 1 84 -208 1 1211 261 0 0 0 chr3 82129732 82129761 -77470022 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1 1211 592 287 32 96 chr3 82129761 82129988 -77469795 + B4A SINE B4 85 292 0 1 1211 6206 103 57 8 chr3 82130351 82131288 -77468495 + RLTR13C1 LTR ERVK 1 983 0 1 1211 3790 151 92 6 chr3 82131493 82132019 -77467764 + Lx4A LINE L1 549 1075 -6011 1 1211 4053 57 14 4 chr3 82132019 82132526 -77467257 - RLTR1B LTR ERV1 0 512 1 1 1211 3790 127 17 21 chr3 82132526 82132878 -77466905 + Lx4A LINE L1 1076 1483 -4394 1 1211 5088 132 29 3 chr3 82132874 82133890 -77465893 + Lx2 LINE L1 5398 6437 -560 1 1211 8429 137 52 6 chr3 82133899 82136313 -77463470 + Lx4A LINE L1 4489 7053 -5 1 1211 290 26 0 25 chr3 82136314 82136354 -77463429 + (TAAA)n Simple_repeat Simple_repeat 1 39 0 1 1211 297 281 125 0 chr3 82136451 82136547 -77463236 - Arthur1C DNA Tip100 -252 111 4 1 1211 23 0 0 0 chr3 82136981 82137004 -77462779 + AT_rich Low_complexity Low_complexity 1 23 0 1 1211 222 62 0 0 chr3 82137457 82137489 -77462294 + (TGGGGG)n Simple_repeat Simple_repeat 1 32 0 1 1211 224 146 0 35 chr3 82138961 82139018 -77460765 + GA-rich Low_complexity Low_complexity 4 58 0 1 1211 592 219 80 7 chr3 82139603 82139741 -77460042 - B1_Mur3 SINE Alu -1 148 1 1 1211 220 139 23 0 chr3 82139848 82139891 -77459892 + A-rich Low_complexity Low_complexity 4 47 0 1 1211 949 256 15 19 chr3 82139916 82140183 -77459600 - Lx7 LINE L1 -311 7385 7120 1 1211 663 221 108 108 chr3 82140414 82140599 -77459184 + RLTR42 LTR ERVK 1 189 -50 1 1211 1070 118 0 6 chr3 82140599 82140770 -77459013 + (TTTC)n Simple_repeat Simple_repeat 3 172 0 1 1211 663 221 108 108 chr3 82140770 82140797 -77458986 + RLTR42 LTR ERVK 190 213 -26 1 1211 583 78 22 0 chr3 82140799 82140889 -77458894 + (TC)n Simple_repeat Simple_repeat 1 92 0 1 1211 21 0 0 0 chr3 82141027 82141048 -77458735 + AT_rich Low_complexity Low_complexity 1 21 0 1 1211 488 233 30 30 chr3 82141681 82141814 -77457969 - Lx7 LINE L1 -437 7259 7127 1 1211 388 213 111 0 chr3 82141960 82142068 -77457715 - ORR1E LTR MaLR -239 120 1 1 1211 264 77 0 0 chr3 82142247 82142286 -77457497 + (TG)n Simple_repeat Simple_repeat 1 39 0 1 1211 227 230 50 75 chr3 82142987 82143067 -77456716 - LTR83 LTR ERVL -644 136 59 1 1211 412 192 0 0 chr3 82146333 82146406 -77453377 + B4A SINE B4 13 85 -207 1 1211 268 375 37 6 chr3 82146410 82146571 -77453212 - MLT1H LTR MaLR -363 186 21 1 1211 365 305 32 19 chr3 82148236 82148393 -77451390 + ERVL-E-int LTR ERVL 3963 4121 -1546 1 1211 596 141 174 0 chr3 82149154 82149275 -77450508 - RLTR14 LTR ERV1 -9 373 232 1 1211 1013 62 0 0 chr3 82149273 82149402 -77450381 + B1_Mus1 SINE Alu 8 136 -12 1 1211 315 0 0 0 chr3 82149402 82149437 -77450346 + (CAAAA)n Simple_repeat Simple_repeat 3 37 0 1 1211 1256 141 10 14 chr3 82149440 82149648 -77450135 - RLTR14 LTR ERV1 -154 228 22 1 1211 2755 78 47 5 chr3 82149664 82150065 -77449718 + BGLII LTR ERVK 4 421 0 1 1211 348 106 0 0 chr3 82150250 82150297 -77449486 - RLTR1B LTR ERV1 0 512 466 1 1211 608 142 68 13 chr3 82150295 82150414 -77449369 + RLTR1B LTR ERV1 368 590 -15 1 1211 517 68 14 0 chr3 82150414 82150488 -77449295 - RLTR1B LTR ERV1 0 512 438 1 1211 770 152 57 44 chr3 82150505 82150663 -77449120 + RLTR12B LTR ERVK 369 528 0 1 1211 789 21 0 0 chr3 82150822 82150917 -77448866 + (CTG)n Simple_repeat Simple_repeat 3 97 0 1 1211 271 274 99 49 chr3 82151562 82151704 -77448079 + L3 LINE CR1 4138 4286 -203 1 1211 25 31 0 0 chr3 82153248 82153280 -77446503 + AT_rich Low_complexity Low_complexity 1 32 0 1 1211 1909 131 18 59 chr3 82153385 82153725 -77446058 + ORR1A3 LTR MaLR 1 326 0 2 1211 1770 183 70 39 chr3 82153825 82154184 -77445599 - ORR1B1 LTR MaLR 0 394 25 2 1211 216 0 0 0 chr3 82154475 82154499 -77445284 + (TTTTG)n Simple_repeat Simple_repeat 3 26 0 2 1211 216 0 0 0 chr3 82154756 82154780 -77445003 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 2 1211 8530 79 55 2 chr3 82154783 82156037 -77443746 - Lx3A LINE L1 -16 6965 5645 2 1211 456 326 59 27 chr3 82156401 82156587 -77443196 - MER63A DNA AcHobo -7 203 12 2 1211 4950 165 39 4 chr3 82157370 82158192 -77441591 - Lx5 LINE L1 -1 7049 6199 2 1211 319 280 204 47 chr3 82158482 82158654 -77441129 + RMER15 LTR ERVL 336 534 -41 2 1211 1185 68 0 0 chr3 82159689 82159837 -77439946 - B1_Mus1 SINE Alu 0 148 1 2 1211 189 121 0 0 chr3 82160367 82160400 -77439383 + (CA)n Simple_repeat Simple_repeat 1 33 0 2 1211 605 259 75 40 chr3 82164295 82164571 -77435212 - ORR1D2 LTR MaLR -14 405 1 2 1211 3432 243 66 60 chr3 82164574 82165631 -77434152 - ORR1D2-int LTR MaLR -3 1367 305 2 1211 1590 230 65 10 chr3 82165641 82166027 -77433756 - MTD LTR MaLR -12 407 1 2 1211 789 236 199 15 chr3 82166027 82166288 -77433495 - ORR1D2-int LTR MaLR -1061 309 1 2 1211 1131 238 67 14 chr3 82166292 82166638 -77433145 - ORR1D2 LTR MaLR -4 366 3 2 1211 441 234 0 0 chr3 82168956 82169050 -77430733 + B1F SINE Alu 1 94 -55 2 1211 189 284 81 23 chr3 82169773 82169879 -77429904 + MIR SINE MIR 58 170 -38 2 1211 218 136 0 22 chr3 82170193 82170238 -77429545 + GA-rich Low_complexity Low_complexity 1 44 0 2 1211 274 130 22 0 chr3 82170543 82170589 -77429194 - MTD LTR MaLR -14 405 359 2 1211 1039 164 23 33 chr3 82170589 82170803 -77428980 - ORR1B2 LTR MaLR 0 367 156 2 1211 303 93 0 0 chr3 82170803 82170846 -77428937 + (GA)n Simple_repeat Simple_repeat 2 44 0 2 1211 189 0 0 0 chr3 82170869 82170890 -77428893 + (GCTTG)n Simple_repeat Simple_repeat 1 21 0 2 1211 7877 57 9 2 chr3 82171301 82172857 -77426926 - L1Md_F2 LINE L1 0 6582 5015 2 1211 604 219 0 58 chr3 82172864 82173019 -77426764 - ORR1B2 LTR MaLR -221 146 1 2 1211 683 231 138 19 chr3 82173063 82173323 -77426460 - MTD LTR MaLR -116 303 13 2 1211 463 312 53 0 chr3 82173400 82173608 -77426175 + L1MB1 LINE L1 5925 6143 -46 2 1211 206 121 0 0 chr3 82175374 82175407 -77424376 + (TG)n Simple_repeat Simple_repeat 2 34 0 2 1211 183 42 0 0 chr3 82176552 82176576 -77423207 + (TG)n Simple_repeat Simple_repeat 1 24 0 2 1211 275 252 65 71 chr3 82177603 82177757 -77422026 - RSINE1 SINE B4 -12 153 1 2 1211 454 246 0 139 chr3 82177800 82177951 -77421832 - B3A SINE B2 -64 134 5 2 1211 185 352 111 8 chr3 82178223 82178349 -77421434 + MIRb SINE MIR 56 194 -74 2 1211 1306 234 86 8 chr3 82178734 82179105 -77420678 + MTD LTR MaLR 6 405 -14 2 1211 231 248 173 101 chr3 82179134 82179273 -77420510 - MIRb SINE MIR -106 162 14 2 1211 1892 141 102 17 chr3 82179701 82180062 -77419721 - ORR1B1 LTR MaLR 0 394 3 2 1211 376 324 37 0 chr3 82180398 82180506 -77419277 + PB1D10 SINE Alu 1 112 -5 2 1211 385 163 10 115 chr3 82180508 82180612 -77419171 + B3A SINE B2 15 107 -91 2 1211 528 59 0 0 chr3 82180647 82180715 -77419068 + (CA)n Simple_repeat Simple_repeat 1 68 0 2 1212 1238 168 23 0 chr3 82182546 82182766 -77417017 + URR1A DNA MER1_type 1 225 -1 2 1212 271 167 0 48 chr3 82183348 82183411 -77416372 + B1F SINE Alu 18 77 -72 2 1212 326 265 21 21 chr3 82183807 82183927 -77415856 - B1F SINE Alu 0 149 1 2 1212 244 17 0 267 chr3 82184550 82184790 -77414993 + (CTCA)n Simple_repeat Simple_repeat 3 178 0 2 1212 385 0 73 0 chr3 82185427 82185482 -77414301 + (TTTTG)n Simple_repeat Simple_repeat 2 60 0 2 1212 1201 42 0 7 chr3 82185482 82185619 -77414164 - B1_Mus1 SINE Alu -11 137 1 2 1212 200 217 0 21 chr3 82187216 82187263 -77412520 + GA-rich Low_complexity Low_complexity 2 47 0 2 1212 211 346 0 0 chr3 82187791 82187869 -77411914 + GA-rich Low_complexity Low_complexity 4 81 0 2 1212 3638 132 63 45 chr3 82190944 82191357 -77408426 - RMER6A LTR ERVK -2 754 318 2 1212 5204 50 25 0 chr3 82191357 82192011 -77407772 - L1Md_F3 LINE L1 0 6584 5915 2 1212 3638 132 63 45 chr3 82192011 82192337 -77407446 - RMER6A LTR ERVK -439 317 1 2 1212 936 43 0 0 chr3 82192718 82192835 -77406948 + (CA)n Simple_repeat Simple_repeat 1 117 0 2 1212 373 248 46 0 chr3 82194289 82194398 -77405385 - PB1D7 SINE Alu 0 120 7 2 1212 180 176 0 0 chr3 82194466 82194500 -77405283 + (CCA)n Simple_repeat Simple_repeat 1 34 0 2 1212 563 267 29 7 chr3 82194505 82194641 -77405142 - B1F SINE Alu -10 139 1 2 1212 469 287 7 27 chr3 82194683 82194830 -77404953 + ID_B1 SINE B4 79 222 -2 2 1212 236 30 30 0 chr3 82196022 82196055 -77403728 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 2 1212 280 314 52 69 chr3 82196239 82196417 -77403366 - MIRc SINE MIR -84 184 18 2 1212 243 0 0 0 chr3 82199650 82199677 -77400106 + (TG)n Simple_repeat Simple_repeat 2 28 0 2 1212 236 268 148 39 chr3 82200031 82200159 -77399624 - Charlie17a DNA MER1_type 0 219 78 2 1212 341 226 21 0 chr3 82200701 82200794 -77398989 + L1M2 LINE L1 5146 5240 -903 2 1212 329 192 51 0 chr3 82200883 82200961 -77398822 + L1MA6 LINE L1 6130 6211 -89 2 1212 305 328 129 29 chr3 82202318 82202698 -77397085 - L2 LINE L2 -1092 2327 1910 2 1212 3556 22 0 0 chr3 82202957 82203358 -77396425 - L1Md_F3 LINE L1 -8 6576 6176 2 1212 451 295 118 18 chr3 82205461 82205630 -77394153 - B3A SINE B2 -8 190 5 2 1212 191 188 0 20 chr3 82205732 82205781 -77394002 + (TA)n Simple_repeat Simple_repeat 1 48 0 2 1212 274 322 43 20 chr3 82206058 82206235 -77393548 - L1M5 LINE L1 -445 5734 5556 2 1212 495 247 39 93 chr3 82207385 82207590 -77392193 - L1M2 LINE L1 -2177 3966 3773 2 1212 3797 106 26 0 chr3 82207598 82208145 -77391638 - L1_Mus3 LINE L1 -1 6637 6077 2 1212 1779 58 0 0 chr3 82208145 82208368 -77391415 + L1_Mus3 LINE L1 5855 6077 -489 2 1212 818 257 52 17 chr3 82208352 82208641 -77391142 - L1M2 LINE L1 -2359 3784 3486 2 1212 274 221 33 55 chr3 82208812 82208903 -77390880 - L1M7 LINE L1 -4482 1736 1648 2 1212 379 305 65 85 chr3 82209179 82209473 -77390310 + MLT1A LTR MaLR 62 349 -25 2 1212 324 0 0 0 chr3 82209490 82209526 -77390257 + (TTCC)n Simple_repeat Simple_repeat 1 36 0 2 1212 288 0 0 0 chr3 82209526 82209557 -77390226 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 2 1212 846 225 54 34 chr3 82210803 82211042 -77388741 + L1_Mur3 LINE L1 567 810 -6918 2 1212 8170 172 56 38 chr3 82211271 82213554 -77386229 + L1_Mur3 LINE L1 793 3114 -2766 2 1212 2961 74 0 2 chr3 82216067 82216461 -77383322 + L1_Mus4 LINE L1 6244 6636 0 2 1212 242 327 20 10 chr3 82217266 82217368 -77382415 + MER67D LTR ERV1 3 105 -409 2 1212 309 305 101 24 chr3 82217387 82217636 -77382147 + MER67D LTR ERV1 180 436 -78 2 1212 246 128 0 0 chr3 82217649 82217688 -77382095 + (CA)n Simple_repeat Simple_repeat 2 40 0 2 1212 228 200 86 74 chr3 82217778 82217789 -77381994 - ID_B1 SINE B4 -1 223 178 2 1212 247 219 109 0 chr3 82217789 82217853 -77381930 - B1F SINE Alu -8 141 71 2 1212 866 176 11 43 chr3 82218170 82218354 -77381429 + URR1A DNA MER1_type 49 226 0 2 1212 252 167 0 40 chr3 82218590 82218665 -77381118 + GA-rich Low_complexity Low_complexity 1 72 0 2 1212 687 116 0 0 chr3 82218678 82218790 -77380993 + (GGGA)n Simple_repeat Simple_repeat 2 113 0 2 1212 431 250 0 0 chr3 82218897 82218977 -77380806 - ID4_ SINE ID -3 80 1 2 1212 26 0 0 0 chr3 82219290 82219316 -77380467 + AT_rich Low_complexity Low_complexity 1 26 0 2 1212 399 21 0 0 chr3 82219859 82219907 -77379876 + (TG)n Simple_repeat Simple_repeat 1 48 0 2 1212 362 268 158 19 chr3 82220518 82220727 -77379056 + MLT1A0 LTR MaLR 128 365 0 2 1212 558 345 60 11 chr3 82220727 82221008 -77378775 + MLT2C1 LTR ERVL 35 329 -68 2 1212 251 89 0 4 chr3 82221533 82221577 -77378206 + MLT2C1 LTR ERVL 518 560 0 2 1212 393 22 0 0 chr3 82221781 82221827 -77377956 + (CA)n Simple_repeat Simple_repeat 2 47 0 2 1212 1026 250 14 50 chr3 82221944 82222226 -77377557 - MTE2b LTR MaLR -36 343 72 2 1212 1077 224 106 109 chr3 82222364 82222740 -77377043 + MTE2a LTR MaLR 1 375 -4 2 1212 22 35 0 0 chr3 82222800 82222829 -77376954 + AT_rich Low_complexity Low_complexity 1 29 0 2 1212 486 0 0 0 chr3 82222983 82223037 -77376746 + (TATG)n Simple_repeat Simple_repeat 2 55 0 2 1212 3488 210 47 62 chr3 82223037 82223055 -77376728 - Lx5 LINE L1 -16 7034 7017 2 1212 294 29 0 0 chr3 82223055 82223090 -77376693 + (CA)n Simple_repeat Simple_repeat 1 35 0 2 1212 3488 210 47 62 chr3 82223090 82223999 -77375784 - Lx5 LINE L1 -34 7016 6121 2 1212 374 271 169 0 chr3 82224113 82224290 -77375493 - L1MC1 LINE L1 -430 5903 5697 2 1212 1061 214 24 0 chr3 82224306 82224516 -77375267 + B3 SINE B2 2 216 0 2 1212 32 26 0 0 chr3 82225176 82225215 -77374568 + AT_rich Low_complexity Low_complexity 1 39 0 2 1212 352 373 48 0 chr3 82226228 82226354 -77373429 - MLT1J LTR MaLR -306 206 75 2 1212 370 96 0 76 chr3 82226490 82226569 -77373214 + T-rich Low_complexity Low_complexity 1 73 0 2 1212 3928 33 6 2 chr3 82226570 82227059 -77372724 + L1Md_F3 LINE L1 6068 6558 -26 2 1212 311 294 8 99 chr3 82227079 82227200 -77372583 + PB1D10 SINE Alu 1 110 -7 2 1212 22 35 0 0 chr3 82227214 82227243 -77372540 + AT_rich Low_complexity Low_complexity 1 29 0 2 1212 734 272 44 41 chr3 82227270 82227608 -77372175 - Lx7 LINE L1 0 7696 7358 2 1212 630 199 20 116 chr3 82227640 82227839 -77371944 - Lx7 LINE L1 -336 7360 7181 2 1212 626 154 8 0 chr3 82227849 82227979 -77371804 + (TA)n Simple_repeat Simple_repeat 2 132 0 2 1212 3382 239 39 21 chr3 82227983 82228865 -77370918 - Lx7 LINE L1 -523 7173 6277 2 1212 235 295 11 0 chr3 82229925 82230020 -77369763 - Lx7 LINE L1 -23 7673 7578 2 1212 23 97 0 0 chr3 82230030 82230102 -77369681 + AT_rich Low_complexity Low_complexity 1 72 0 2 1212 7448 220 45 57 chr3 82230102 82231801 -77367982 - Lx7 LINE L1 -21 7675 5999 2 1212 1668 158 38 132 chr3 82231801 82232218 -77367565 + ORR1C1 LTR MaLR 1 378 0 2 1212 7448 220 45 57 chr3 82232218 82232632 -77367151 - Lx7 LINE L1 -1698 5998 5588 2 1212 1466 146 142 3 chr3 82232643 82232945 -77366838 - Lx7 LINE L1 -1100 4780 4437 2 1212 540 45 0 0 chr3 82232962 82233029 -77366754 + (TC)n Simple_repeat Simple_repeat 2 68 0 2 1212 680 134 17 0 chr3 82233038 82233157 -77366626 - Lx7 LINE L1 -3106 2774 2654 2 1212 312 299 7 118 chr3 82233240 82233392 -77366391 + RMER4B LTR ERVK 36 170 -415 3 1212 240 208 21 0 chr3 82235201 82235249 -77364534 - ORR1A1-int LTR MaLR -656 1136 1088 3 1212 441 0 0 0 chr3 82235398 82235447 -77364336 + (CA)n Simple_repeat Simple_repeat 2 50 0 3 1212 2161 151 35 24 chr3 82236376 82236830 -77362953 - L1_Mur3 LINE L1 -3219 2661 2203 3 1212 4314 234 113 14 chr3 82236965 82238182 -77361601 + Lx7 LINE L1 6095 7432 -264 3 1212 356 273 9 0 chr3 82238235 82238345 -77361438 + Lx7 LINE L1 7561 7671 -25 3 1212 1260 249 41 75 chr3 82238659 82239046 -77360737 + ORR1D1 LTR MaLR 1 374 0 3 1212 432 0 0 0 chr3 82240466 82240514 -77359269 + (TG)n Simple_repeat Simple_repeat 2 49 0 3 1212 375 329 67 89 chr3 82240539 82240909 -77358874 - MLT2B1 LTR ERVL -106 461 1 3 1212 294 298 107 70 chr3 82241034 82241165 -77358618 + MLT1C LTR MaLR 108 240 -150 3 1212 659 78 0 10 chr3 82241165 82241269 -77358514 + (GA)n Simple_repeat Simple_repeat 2 104 0 3 1212 317 270 68 50 chr3 82241269 82241408 -77358375 + MLT1C LTR MaLR 241 465 -2 3 1212 2397 104 139 41 chr3 82241518 82241957 -77357826 + RLTR45 LTR ERVK 1 482 0 3 1212 1254 266 58 36 chr3 82243504 82243867 -77355916 - MTE2b LTR MaLR -8 371 1 3 1212 373 284 42 33 chr3 82243968 82244088 -77355695 - MER46C DNA MER2_type -215 123 3 3 1212 762 104 15 22 chr3 82244141 82244278 -77355505 + (GAGAA)n Simple_repeat Simple_repeat 4 139 0 3 1212 261 171 0 0 chr3 82244278 82244319 -77355464 + polypurine Low_complexity Low_complexity 3 43 0 3 1212 26 50 0 0 chr3 82244394 82244434 -77355349 + AT_rich Low_complexity Low_complexity 1 40 0 3 1212 2469 96 30 77 chr3 82244776 82245207 -77354576 - RLTR9F LTR ERVK -4 411 1 3 1212 350 164 14 0 chr3 82245208 82245281 -77354502 - ETnERV2-int LTR ERVK -2 7404 7331 3 1212 4782 156 16 21 chr3 82245495 82246528 -77353255 - ETnERV2-int LTR ERVK -1179 6227 5440 3 1212 304 254 154 15 chr3 82246701 82246837 -77352946 + L1MD2 LINE L1 4783 4937 -1209 3 1212 362 324 134 21 chr3 82246936 82247078 -77352705 + RSINE1 SINE B4 6 163 -2 3 1212 334 313 82 16 chr3 82247102 82247284 -77352499 + L1MD2 LINE L1 5010 5203 -943 3 1212 449 238 39 10 chr3 82247305 82247407 -77352376 + B4 SINE B4 159 263 -29 3 1212 747 320 50 65 chr3 82247577 82247854 -77351929 + MTEb LTR MaLR 4 276 -103 3 1212 313 87 28 28 chr3 82247940 82248011 -77351772 + (TTTTTG)n Simple_repeat Simple_repeat 2 72 0 3 1212 1177 56 7 0 chr3 82248028 82248172 -77351611 - B1_Mm SINE Alu -1 146 2 3 1212 1956 190 62 5 chr3 82248184 82248571 -77351212 + MTC LTR MaLR 13 421 0 3 1212 299 0 73 0 chr3 82248593 82248634 -77351149 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 3 1212 357 271 111 38 chr3 82248640 82248901 -77350882 + L1MD2 LINE L1 5593 5872 -487 3 1212 239 312 29 107 chr3 82249608 82249852 -77349931 + L1MD2 LINE L1 6040 6264 -95 3 1212 724 270 24 57 chr3 82250440 82250652 -77349131 + B3 SINE B2 1 205 -11 3 1212 23 54 0 0 chr3 82250663 82250700 -77349083 + AT_rich Low_complexity Low_complexity 1 37 0 3 1212 520 278 36 14 chr3 82250705 82250924 -77348859 - L1MC1 LINE L1 -13 6320 6097 3 1212 6116 53 4 4 chr3 82251408 82252172 -77347611 + L1Md_F2 LINE L1 5818 6581 -1 3 1212 444 286 97 28 chr3 82252204 82252348 -77347435 - RSINE1 SINE B4 -10 155 2 3 1212 320 329 41 37 chr3 82252676 82252922 -77346861 - L1MC1 LINE L1 -336 5997 5751 3 1212 1408 262 59 8 chr3 82253261 82253650 -77346133 - MTD LTR MaLR -8 411 3 3 1212 413 305 31 15 chr3 82253865 82253995 -77345788 - B3 SINE B2 -8 208 77 3 1212 941 283 75 41 chr3 82254007 82254449 -77345334 - RLTR12B LTR ERVK -25 503 47 3 1212 4513 183 42 56 chr3 82254478 82255599 -77344184 - MYSERV6-int LTR ERVK -2 8957 7853 3 1212 339 192 79 88 chr3 82255651 82255765 -77344018 - RMER4B LTR ERVK -36 549 437 3 1212 656 74 11 0 chr3 82255848 82255943 -77343840 + (TC)n Simple_repeat Simple_repeat 2 97 0 3 1212 11872 201 32 43 chr3 82256026 82259069 -77340714 - MYSERV6-int LTR ERVK -4864 4095 1085 3 1212 1528 122 152 3 chr3 82259072 82259367 -77340416 - Lx LINE L1 0 6654 6316 3 1212 2587 265 57 17 chr3 82259368 82260109 -77339674 - MYSERV6-int LTR ERVK -7876 1083 311 3 1212 270 0 0 0 chr3 82260109 82260139 -77339644 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 3 1212 2587 265 57 17 chr3 82260139 82260326 -77339457 - MYSERV6-int LTR ERVK -8649 310 119 3 1212 1119 124 70 5 chr3 82260939 82261126 -77338657 + Lx3A LINE L1 6769 6967 -14 3 1212 231 36 0 0 chr3 82261126 82261154 -77338629 + (GAAA)n Simple_repeat Simple_repeat 1 28 0 3 1212 1033 126 6 6 chr3 82261156 82261332 -77338451 + (GGAA)n Simple_repeat Simple_repeat 3 178 0 3 1212 441 0 0 0 chr3 82261783 82261832 -77337951 + (TC)n Simple_repeat Simple_repeat 2 50 0 3 1212 225 0 0 0 chr3 82261832 82261856 -77337927 + (TG)n Simple_repeat Simple_repeat 2 26 0 3 1212 616 290 45 40 chr3 82261871 82262072 -77337711 - ID_B1 SINE B4 -21 203 2 3 1212 441 293 14 68 chr3 82262490 82262638 -77337145 + ID_B1 SINE B4 85 221 -3 3 1212 339 318 82 44 chr3 82263663 82263821 -77335962 + RMER5 LTR ERV1 49 212 -322 3 1212 416 86 0 14 chr3 82264416 82264487 -77335296 + (TA)n Simple_repeat Simple_repeat 1 70 0 3 1212 203 146 24 0 chr3 82264495 82264536 -77335247 + GA-rich Low_complexity Low_complexity 1 42 0 3 1212 908 36 0 0 chr3 82265991 82266102 -77333681 + L1Md_T LINE L1 5476 5586 -297 3 1212 8374 38 0 0 chr3 82266102 82267098 -77332685 + L1Md_T LINE L1 5587 6582 0 3 1212 1092 272 126 6 chr3 82268535 82268861 -77330922 - ORR1D2 LTR MaLR -4 366 2 3 1212 223 104 40 40 chr3 82268990 82269040 -77330743 + (CAAA)n Simple_repeat Simple_repeat 2 51 0 3 1212 2731 183 38 41 chr3 82269064 82269361 -77330422 - RLTR24 LTR ERV1 0 529 218 3 1212 3477 18 5 0 chr3 82269361 82269755 -77330028 - MTA_Mm LTR MaLR 0 396 1 3 1212 2731 183 38 41 chr3 82269755 82269988 -77329795 - RLTR24 LTR ERV1 -312 217 1 3 1212 3377 33 5 0 chr3 82270203 82270597 -77329186 - MTA_Mm LTR MaLR 0 396 1 3 1212 478 289 74 12 chr3 82270837 82271079 -77328704 - L1_Mur3 LINE L1 -6899 813 557 3 1212 195 129 0 0 chr3 82271583 82271614 -77328169 + (TTTG)n Simple_repeat Simple_repeat 4 34 0 3 1212 585 114 0 0 chr3 82271992 82272097 -77327686 + (TGG)n Simple_repeat Simple_repeat 3 107 0 3 1212 241 167 21 0 chr3 82272103 82272151 -77327632 + (TCTG)n Simple_repeat Simple_repeat 2 50 0 3 1212 704 333 16 12 chr3 82272964 82273207 -77326576 + B4A SINE B4 48 291 -1 3 1212 309 240 24 0 chr3 82273212 82273235 -77326548 + (CATATA)n Simple_repeat Simple_repeat 1 23 0 3 1212 3219 84 55 2 chr3 82273235 82273686 -77326097 - MT2C_Mm LTR ERVL 0 475 1 3 1212 309 240 24 0 chr3 82273686 82273787 -77325996 + (CATATA)n Simple_repeat Simple_repeat 6 109 0 3 1212 897 286 55 0 chr3 82274352 82274590 -77325193 - MTE2b LTR MaLR -128 251 1 3 1212 23 0 0 0 chr3 82275328 82275351 -77324432 + AT_rich Low_complexity Low_complexity 1 23 0 3 1212 280 336 199 23 chr3 82275541 82275672 -77324111 + RSINE1 SINE B4 12 165 0 3 1212 303 380 124 5 chr3 82276267 82276468 -77323315 - MLT1I LTR MaLR -145 266 42 3 1212 522 250 47 115 chr3 82276745 82276980 -77322803 - RMER15 LTR ERVL 0 575 357 3 1212 387 207 121 36 chr3 82277002 82277142 -77322641 - RMER15 LTR ERVL -378 197 46 3 1212 490 310 48 87 chr3 82277411 82277774 -77322009 - MTEa LTR MaLR -7 372 10 3 1212 591 279 34 48 chr3 82278053 82278260 -77321523 - B3 SINE B2 -3 213 10 3 1212 425 318 31 8 chr3 82278688 82278815 -77320968 + RSINE1 SINE B4 1 130 -35 3 1212 508 50 0 24 chr3 82278825 82278907 -77320876 + (CACAC)n Simple_repeat Simple_repeat 1 80 0 3 1212 206 80 19 57 chr3 82278921 82278974 -77320809 + GA-rich Low_complexity Low_complexity 6 56 0 3 1212 2116 134 17 44 chr3 82280257 82280670 -77319113 - L1_Mur2 LINE L1 -1988 3889 3488 3 1212 3926 158 30 5 chr3 82280688 82281344 -77318439 + Lx4B LINE L1 6386 7058 0 3 1212 561 129 0 0 chr3 82281344 82281437 -77318346 + (GA)n Simple_repeat Simple_repeat 1 93 0 3 1212 407 299 17 11 chr3 82281917 82282092 -77317691 + B4A SINE B4 10 286 -6 3 1212 225 333 96 6 chr3 82282562 82282740 -77317043 + L1MEg LINE L1 476 669 -5415 3 1212 397 385 35 0 chr3 82283079 82283222 -77316561 + B4A SINE B4 28 175 -117 3 1212 225 0 0 0 chr3 82283405 82283430 -77316353 + (GA)n Simple_repeat Simple_repeat 1 25 0 3 1212 336 339 100 0 chr3 82284400 82284530 -77315253 - MIR SINE MIR -63 199 57 3 1212 2199 95 21 48 chr3 82284715 82285092 -77314691 - IAPLTR1_Mm LTR ERVK 0 367 1 3 1212 52413 30 8 6 chr3 82285096 82291549 -77308234 - IAPEz-int LTR ERVK -3 6478 8 3 1212 2199 95 21 48 chr3 82291549 82291926 -77307857 - IAPLTR1_Mm LTR ERVK 0 367 1 3 1212 23 0 0 0 chr3 82293424 82293447 -77306336 + AT_rich Low_complexity Low_complexity 1 23 0 3 1212 269 270 22 22 chr3 82294012 82294101 -77305682 + MLT1C LTR MaLR 267 416 -51 3 1212 228 240 0 0 chr3 82294538 82294588 -77305195 + (TTCA)n Simple_repeat Simple_repeat 3 52 0 3 1212 239 114 44 22 chr3 82294757 82294802 -77304981 + U2 snRNA snRNA 12 57 -131 3 1212 555 307 25 29 chr3 82295630 82295905 -77303878 - L1M3 LINE L1 -491 5677 5404 3 1212 225 320 0 99 chr3 82296631 82296652 -77303131 + MT2B2 LTR ERVL 145 154 -430 3 1212 385 318 7 85 chr3 82296652 82296793 -77302990 + B1F1 SINE Alu 1 130 -19 3 1212 553 77 22 11 chr3 82297225 82297317 -77302466 + (TTCC)n Simple_repeat Simple_repeat 1 93 0 3 1212 480 35 0 0 chr3 82297341 82297399 -77302384 + (TG)n Simple_repeat Simple_repeat 2 59 0 3 1212 213 83 61 20 chr3 82297513 82297562 -77302221 + CT-rich Low_complexity Low_complexity 4 54 0 3 1212 306 0 0 0 chr3 82298084 82298118 -77301665 + (A)n Simple_repeat Simple_repeat 1 34 0 3 1212 340 304 35 29 chr3 82299766 82299939 -77299844 + L2 LINE L2 1444 1617 -1802 3 1212 225 349 77 55 chr3 82299970 82300152 -77299631 + L2 LINE L2 1723 1908 -1511 3 1212 701 292 56 93 chr3 82301457 82301835 -77297948 + MLT1A0 LTR MaLR 1 364 -1 3 1212 317 361 25 19 chr3 82301879 82302037 -77297746 + MER33 DNA MER1_type 1 159 -165 3 1212 239 346 12 0 chr3 82303045 82303126 -77296657 + RMER15 LTR ERVL 478 559 -16 3 1212 629 229 77 39 chr3 82303613 82303795 -77295988 + B3A SINE B2 2 190 -8 3 1212 835 162 9 30 chr3 82304078 82304307 -77295476 + CT-rich Low_complexity Low_complexity 1 224 0 3 1212 510 270 75 5 chr3 82304590 82304791 -77294992 + Lx7 LINE L1 5651 5865 -1831 3 1212 450 296 77 19 chr3 82305054 82305261 -77294522 + ID_B1 SINE B4 2 220 -4 3 1212 33 25 0 0 chr3 82305327 82305367 -77294416 + AT_rich Low_complexity Low_complexity 1 40 0 4 1212 1014 173 0 0 chr3 82306154 82306433 -77293350 + GA-rich Low_complexity Low_complexity 1 279 0 4 1212 294 284 0 15 chr3 82306627 82306695 -77293088 + ID4 SINE ID 12 78 -5 4 1212 189 74 0 0 chr3 82306696 82306723 -77293060 + (CAAG)n Simple_repeat Simple_repeat 2 28 0 4 1212 230 284 104 38 chr3 82307558 82307664 -77292119 - MLT1A1 LTR MaLR -28 380 268 4 1212 407 19 19 0 chr3 82308259 82308311 -77291472 + (GA)n Simple_repeat Simple_repeat 1 53 0 4 1212 311 348 70 27 chr3 82309396 82309582 -77290201 - MLT1L LTR MaLR 0 610 417 4 1212 3722 20 2 0 chr3 82311319 82311775 -77288008 + L1Md_T LINE L1 5130 5586 -297 4 1212 8171 45 1 0 chr3 82311775 82312770 -77287013 + L1Md_T LINE L1 5587 6582 0 4 1212 22 35 0 0 chr3 82313148 82313177 -77286606 + AT_rich Low_complexity Low_complexity 1 29 0 4 151 542 234 108 36 chr3 82313197 82313392 -77286391 + B3 SINE B2 1 209 -7 4 1213 342 0 0 0 chr3 82314116 82314154 -77285629 + (TAAAA)n Simple_repeat Simple_repeat 4 41 0 4 1213 654 78 0 0 chr3 82314237 82314339 -77285444 + (TG)n Simple_repeat Simple_repeat 2 103 0 4 1213 819 287 98 47 chr3 82314409 82314665 -77285118 - B4A SINE B4 -21 271 3 4 1213 1192 122 0 16 chr3 82315207 82315391 -77284392 + B2_Mm2 SINE B2 1 181 -14 4 1213 414 246 23 9 chr3 82315522 82315666 -77284117 - Lx7 LINE L1 -1278 6195 6046 4 1213 483 360 77 60 chr3 82316408 82316760 -77283023 + MT2A LTR ERVL 78 435 -98 4 1213 369 0 0 0 chr3 82316857 82316898 -77282885 + (CA)n Simple_repeat Simple_repeat 2 42 0 4 1213 1043 121 28 23 chr3 82318052 82318229 -77281554 + B2_Mm1t SINE B2 2 179 -14 4 1213 341 95 322 28 chr3 82318261 82318365 -77281418 + B2_Mm2 SINE B2 47 184 -11 4 1213 260 320 82 67 chr3 82319143 82319277 -77280506 - B1_Mus1 SINE Alu -2 146 11 4 1213 293 269 62 37 chr3 82319210 82319291 -77280492 - B4A SINE B4 -126 166 84 4 1213 370 265 233 12 chr3 82320871 82321043 -77278740 + ID_B1 SINE B4 4 213 -11 4 1213 255 253 67 78 chr3 82321502 82321592 -77278191 - LTR85a LTR Gypsy? -321 381 293 4 1213 1491 222 78 3 chr3 82321965 82322312 -77277471 + ORR1D1 LTR MaLR 1 373 -1 4 1213 276 251 61 86 chr3 82322364 82322482 -77277301 - PB1 SINE Alu -22 127 10 4 1213 227 274 76 109 chr3 82322397 82322516 -77277267 - B4A SINE B4 -120 172 58 4 1213 338 255 93 31 chr3 82322707 82322804 -77276979 - ID_B1 SINE B4 -37 187 85 4 1213 238 338 0 0 chr3 82322882 82322959 -77276824 - Lx8 LINE L1 -1301 6172 6096 4 1213 241 110 265 12 chr3 82323037 82323120 -77276663 + Lx8 LINE L1 7368 7471 -2 4 1213 821 185 0 15 chr3 82323618 82323755 -77276028 + B1_Mur2 SINE Alu 14 148 -1 4 1213 340 287 162 0 chr3 82323986 82324153 -77275630 - L1MC LINE L1 -2072 5810 5617 4 1213 273 253 19 112 chr3 82324513 82324620 -77275163 + PB1 SINE Alu 25 121 -6 4 1213 400 366 57 47 chr3 82324630 82324844 -77274939 - L1ME3A LINE L1 -259 5914 5698 4 1213 204 67 0 0 chr3 82324844 82324874 -77274909 + (TG)n Simple_repeat Simple_repeat 1 30 0 4 1213 400 366 57 47 chr3 82324874 82324957 -77274826 - L1ME3A LINE L1 -476 5697 5614 4 1213 368 142 138 3 chr3 82325012 82325109 -77274674 + B1_Mus2 SINE Alu 1 146 -1 4 1213 6693 44 10 4 chr3 82325359 82326179 -77273604 + L1Md_F2 LINE L1 5745 6569 -13 4 1213 424 105 26 0 chr3 82326466 82326542 -77273241 + (TA)n Simple_repeat Simple_repeat 1 78 0 4 1213 266 320 0 0 chr3 82326762 82326862 -77272921 + L1MA4 LINE L1 5837 5936 -364 4 1213 5590 66 18 0 chr3 82326879 82327594 -77272189 - L1_Mus1 LINE L1 0 6567 5840 4 1213 343 291 212 39 chr3 82327777 82328084 -77271699 + L1M5 LINE L1 4540 4899 -1247 4 1213 341 332 148 40 chr3 82328395 82328794 -77270989 + L1M5 LINE L1 5272 5713 -449 4 1213 264 262 41 34 chr3 82329203 82329349 -77270434 + L1M5 LINE L1 5716 5862 -302 4 1213 5555 124 19 2 chr3 82329701 82330549 -77269234 + Lx LINE L1 5793 6654 0 4 1213 416 283 56 9 chr3 82331166 82331273 -77268510 - PB1D10 SINE Alu 0 117 6 4 1213 456 320 118 99 chr3 82331259 82331523 -77268260 - MLT1A1 LTR MaLR -14 394 81 4 1213 3028 73 5 22 chr3 82331523 82331929 -77267854 + MTB LTR MaLR 1 399 -1 4 1213 288 319 123 113 chr3 82331929 82331992 -77267791 - MLT1A1 LTR MaLR -285 80 19 4 1213 368 198 22 34 chr3 82332113 82332202 -77267581 + MTD LTR MaLR 7 94 -327 4 1213 860 108 30 18 chr3 82332202 82332371 -77267412 - Lx3B LINE L1 -780 6193 6023 4 1213 4923 127 30 14 chr3 82332371 82333145 -77266638 + Lx3A LINE L1 6189 6974 -7 4 1213 970 207 133 24 chr3 82333163 82333411 -77266372 + MTD LTR MaLR 84 358 -61 4 1213 3088 41 0 0 chr3 82333411 82333804 -77265979 + L1Md_F2 LINE L1 5194 5586 -297 4 1213 8257 36 1 2 chr3 82333804 82334795 -77264988 + L1Md_F2 LINE L1 5587 6576 -6 4 1213 22 35 0 0 chr3 82334830 82334859 -77264924 + AT_rich Low_complexity Low_complexity 1 29 0 4 1213 216 407 26 0 chr3 82335156 82335269 -77264514 - MIRb SINE MIR -78 190 75 4 1213 186 43 0 0 chr3 82335369 82335392 -77264391 + (A)n Simple_repeat Simple_repeat 1 23 0 4 1213 349 219 14 0 chr3 82335392 82335465 -77264318 + MTD LTR MaLR 344 417 -2 4 1213 1271 77 50 0 chr3 82336859 82337040 -77262743 - B2_Mm2 SINE B2 -3 192 3 4 1213 623 268 83 55 chr3 82337197 82337450 -77262333 - RMER15 LTR ERVL -14 561 302 4 1213 1555 217 73 60 chr3 82337509 82337906 -77261877 + MTD LTR MaLR 18 419 0 4 1213 1202 335 23 12 chr3 82338103 82338589 -77261194 - RMER15-int LTR ERVL -330 4669 4179 4 1213 571 314 61 35 chr3 82338880 82339078 -77260705 + B3 SINE B2 11 213 -3 4 1213 1105 282 43 21 chr3 82339112 82339391 -77260392 + B4 SINE B4 7 291 -1 4 1213 510 17 0 0 chr3 82339523 82339582 -77260201 + (TG)n Simple_repeat Simple_repeat 2 60 0 4 1213 992 317 7 3 chr3 82340102 82340387 -77259396 - RMER15-int LTR ERVL -3605 1394 1109 4 1213 471 277 14 58 chr3 82340757 82340895 -77258888 + ID_B1 SINE B4 93 224 0 4 1213 663 313 121 94 chr3 82341116 82341603 -77258180 + MLT2B3 LTR ERVL 48 547 -7 4 1213 21 71 0 0 chr3 82342779 82342821 -77256962 + AT_rich Low_complexity Low_complexity 1 42 0 4 1213 665 301 6 0 chr3 82346003 82346166 -77253617 - B4 SINE B4 -3 289 126 4 1213 830 152 6 0 chr3 82346185 82346362 -77253421 + (TG)n Simple_repeat Simple_repeat 1 178 0 4 1213 290 260 0 0 chr3 82346777 82346850 -77252933 + (CA)n Simple_repeat Simple_repeat 1 73 0 4 1213 367 115 0 0 chr3 82346852 82346904 -77252879 + HAL1-3A_ME LINE L1 1975 2026 -832 4 1213 581 260 4 1 chr3 82346916 82347053 -77252730 + B4 SINE B4 120 260 -32 4 1213 2060 246 62 9 chr3 82347053 82347619 -77252164 + Lx5 LINE L1 6450 7045 -5 4 1213 367 309 64 53 chr3 82348314 82348481 -77251302 + LTR33A_ LTR ERVL 3 171 -360 4 1213 307 262 200 49 chr3 82348481 82348686 -77251097 + B4A SINE B4 1 236 -56 4 1213 220 193 0 66 chr3 82348717 82348778 -77251005 + (CATG)n Simple_repeat Simple_repeat 2 58 0 4 1213 523 215 12 28 chr3 82348804 82349059 -77250724 + (CATA)n Simple_repeat Simple_repeat 1 250 0 4 1213 489 17 0 0 chr3 82350075 82350133 -77249650 + (CA)n Simple_repeat Simple_repeat 2 59 0 4 1213 347 263 118 22 chr3 82353624 82353760 -77246023 - B1F SINE Alu 0 149 1 4 1213 480 310 19 25 chr3 82354714 82354849 -77244934 + RSINE1 SINE B4 4 138 -27 4 1213 675 108 0 0 chr3 82354849 82354951 -77244832 + (CA)n Simple_repeat Simple_repeat 2 103 0 4 1213 480 310 19 25 chr3 82354951 82354977 -77244806 + RSINE1 SINE B4 139 164 -1 4 1213 265 213 13 26 chr3 82354982 82355059 -77244724 + (CA)n Simple_repeat Simple_repeat 2 77 0 4 1213 955 106 8 0 chr3 82355128 82355260 -77244523 + B1_Mus1 SINE Alu 2 134 -14 4 1213 490 236 89 0 chr3 82355414 82355571 -77244212 - Tigger7 DNA MER2_type -113 2378 2208 4 1213 925 303 117 6 chr3 82355568 82355920 -77243863 - Tigger7 DNA MER2_type -2097 394 4 4 1213 826 175 28 0 chr3 82357082 82357225 -77242558 - B1_Mur4 SINE Alu -1 149 3 4 1213 521 115 11 0 chr3 82357666 82357753 -77242030 + (TAGA)n Simple_repeat Simple_repeat 2 89 0 4 1213 189 114 0 0 chr3 82357759 82357772 -77242011 + (GA)n Simple_repeat Simple_repeat 1 13 0 4 1213 714 24 0 0 chr3 82357772 82357856 -77241927 + (GAA)n Simple_repeat Simple_repeat 3 86 0 4 1213 189 114 0 0 chr3 82357856 82357877 -77241906 + (GA)n Simple_repeat Simple_repeat 2 22 0 4 1213 480 300 94 75 chr3 82359213 82359510 -77240273 + B4 SINE B4 3 281 -11 4 1213 22 0 0 0 chr3 82360288 82360310 -77239473 + AT_rich Low_complexity Low_complexity 1 22 0 4 1213 496 215 6 89 chr3 82360647 82360710 -77239073 - MT2A LTR ERVL -1 532 470 4 1213 441 54 0 0 chr3 82360710 82360766 -77239017 + (TG)n Simple_repeat Simple_repeat 1 56 0 4 1213 496 215 6 89 chr3 82360766 82360860 -77238923 - MT2A LTR ERVL -64 469 388 4 1213 226 314 123 51 chr3 82360877 82361112 -77238671 - ORR1E LTR MaLR -105 254 3 4 1213 367 310 122 69 chr3 82361843 82362299 -77237484 - MLT1H1 LTR MaLR -15 580 38 4 1213 21 0 0 0 chr3 82362855 82362876 -77236907 + AT_rich Low_complexity Low_complexity 1 21 0 4 1213 603 404 19 33 chr3 82363011 82363372 -77236411 + MER119 DNA MER1_type 20 375 -208 4 1213 2381 303 113 29 chr3 82363385 82363848 -77235935 + L1M2 LINE L1 3369 3843 -2300 4 1213 1085 58 23 0 chr3 82363848 82364019 -77235764 + (TAGA)n Simple_repeat Simple_repeat 4 178 0 4 1213 377 53 0 18 chr3 82364019 82364076 -77235707 + (CATA)n Simple_repeat Simple_repeat 1 56 0 4 1213 2381 303 113 29 chr3 82364076 82364211 -77235572 + L1M2 LINE L1 3844 4010 -2133 4 1213 264 30 0 0 chr3 82364211 82364244 -77235539 + (TA)n Simple_repeat Simple_repeat 1 33 0 4 1213 2381 303 113 29 chr3 82364244 82365513 -77234270 + L1M2 LINE L1 4011 5392 -751 4 1213 369 0 0 0 chr3 82366330 82366371 -77233412 + (CA)n Simple_repeat Simple_repeat 2 42 0 4 1213 256 262 72 36 chr3 82366555 82366595 -77233188 - MER70B LTR ERVL -88 490 447 4 1213 353 258 86 31 chr3 82366595 82366723 -77233060 - ORR1E LTR MaLR 0 379 245 4 1213 340 114 0 54 chr3 82367127 82367201 -77232582 + CT-rich Low_complexity Low_complexity 4 73 0 4 1213 1065 81 11 23 chr3 82367201 82367377 -77232406 + (TCTCCC)n Simple_repeat Simple_repeat 2 175 0 4 1213 371 313 60 32 chr3 82367641 82367826 -77231957 - ORR1E LTR MaLR -167 192 3 4 1213 210 37 0 0 chr3 82369128 82369155 -77230628 + (TAA)n Simple_repeat Simple_repeat 1 27 0 4 1213 464 326 20 27 chr3 82370104 82370252 -77229531 - B1F2 SINE Alu -2 147 1 5 1213 421 330 56 36 chr3 82373477 82373672 -77226111 + ORR1E LTR MaLR 1 199 -160 5 1213 263 250 65 87 chr3 82373742 82373834 -77225949 - MTEa LTR MaLR -10 369 280 5 1213 412 329 6 18 chr3 82374195 82374365 -77225418 + CT-rich Low_complexity Low_complexity 1 168 0 5 1213 5329 71 45 7 chr3 82375024 82375834 -77223949 - L1VL4 LINE L1 -2524 1035 188 5 1213 283 270 53 70 chr3 82376060 82376166 -77223617 + L1MA8 LINE L1 6054 6159 -132 5 1213 342 0 0 0 chr3 82376166 82376204 -77223579 + (TG)n Simple_repeat Simple_repeat 1 38 0 5 1213 283 270 53 70 chr3 82376204 82376324 -77223459 + L1MA8 LINE L1 6160 6276 -15 5 1213 371 247 10 31 chr3 82376651 82376747 -77223036 - PB1 SINE Alu -11 116 23 5 1213 2186 75 36 3 chr3 82377110 82377417 -77222366 - IAPLTR2b LTR ERVK -10 317 1 5 1213 321 272 26 26 chr3 82377506 82377623 -77222160 - PB1D10 SINE Alu 0 117 1 5 1213 22 35 0 0 chr3 82377999 82378028 -77221755 + AT_rich Low_complexity Low_complexity 1 29 0 5 1213 210 71 0 0 chr3 82378744 82378772 -77221011 + (CA)n Simple_repeat Simple_repeat 2 29 0 5 1213 369 43 0 0 chr3 82379000 82379047 -77220736 + (TG)n Simple_repeat Simple_repeat 2 48 0 5 1213 833 236 62 67 chr3 82379190 82379608 -77220175 - Lx9 LINE L1 -2 7642 7227 5 1213 247 298 0 0 chr3 82380018 82380075 -77219708 - ID4_ SINE ID -21 62 6 5 1213 416 209 2 14 chr3 82380604 82380692 -77219091 - PB1D7 SINE Alu -40 87 1 5 1213 646 298 108 16 chr3 82380748 82380997 -77218786 + MER44B DNA MER2_type 22 293 -257 5 1213 227 314 27 41 chr3 82380993 82381066 -77218717 + MER44B DNA MER2_type 468 539 -11 5 1213 465 200 11 0 chr3 82381378 82381468 -77218315 + 4.5SRNA scRNA scRNA 2 92 -2 5 1213 878 290 95 28 chr3 82382989 82383315 -77216468 - MLT1A0 LTR MaLR -17 348 1 5 1213 209 167 51 0 chr3 82383894 82383972 -77215811 + (TCTA)n Simple_repeat Simple_repeat 3 84 0 5 1213 21 36 0 0 chr3 82383989 82384017 -77215766 + AT_rich Low_complexity Low_complexity 1 28 0 5 1213 438 20 0 0 chr3 82384370 82384421 -77215362 + (TC)n Simple_repeat Simple_repeat 2 52 0 5 1213 357 309 37 0 chr3 82384760 82384922 -77214861 + L1MEc LINE L1 185 352 -6048 5 1213 579 250 34 7 chr3 82385404 82385553 -77214230 + B3 SINE B2 57 209 -7 5 1213 274 356 41 33 chr3 82386662 82386784 -77212999 + MLT1K LTR MaLR 330 452 -143 5 1213 346 302 27 32 chr3 82387143 82387263 -77212520 - L1MA6 LINE L1 -329 5971 5851 5 1213 690 13 0 0 chr3 82387263 82387342 -77212441 + (TTTC)n Simple_repeat Simple_repeat 2 80 0 5 1213 346 302 27 32 chr3 82387342 82387409 -77212374 - L1MA6 LINE L1 -450 5850 5786 5 1213 828 227 116 5 chr3 82388809 82389008 -77210775 - RMER21B LTR ERV1 -275 567 347 5 1213 298 260 73 61 chr3 82389017 82389181 -77210602 - RMER21B LTR ERV1 -611 231 66 5 1213 678 305 92 38 chr3 82389227 82389297 -77210486 - L1MA5A LINE L1 -442 5861 5782 5 1213 288 0 0 0 chr3 82389297 82389329 -77210454 + (TG)n Simple_repeat Simple_repeat 2 33 0 5 1213 678 301 89 36 chr3 82389329 82389727 -77210056 - L1MA5A LINE L1 -522 5781 5368 5 1213 643 327 82 24 chr3 82389795 82390284 -77209499 + L1M2 LINE L1 4774 5327 -553 5 1213 655 323 0 18 chr3 82390309 82390326 -77209457 + RSINE1 SINE B4 2 17 -148 5 1213 2023 218 37 7 chr3 82390326 82390729 -77209054 - MTD LTR MaLR -2 417 3 5 1213 655 323 0 18 chr3 82390729 82390878 -77208905 + RSINE1 SINE B4 18 165 0 5 1213 579 99 0 0 chr3 82391701 82391802 -77207981 + (TAGA)n Simple_repeat Simple_repeat 2 102 0 5 1213 1183 88 0 0 chr3 82392816 82392964 -77206819 + B1_Mus1 SINE Alu 1 148 0 5 1213 1018 80 16 33 chr3 82392968 82393150 -77206633 + (GAAAA)n Simple_repeat Simple_repeat 2 180 0 5 1213 3006 33 198 0 chr3 82393150 82393514 -77206269 - RLTR10C LTR ERVK 0 436 1 5 1213 8343 27 2 0 chr3 82393514 82394448 -77205335 - MMERVK10C-int LTR ERVK 0 7581 6646 5 1213 27870 40 0 0 chr3 82394434 82397653 -77202130 - MMERVK10C-int LTR ERVK -1771 5810 2591 5 1213 1017 25 0 0 chr3 82397648 82397768 -77202015 - MMERVK10C-int LTR ERVK -1216 771 652 5 1213 244 123 0 66 chr3 82397793 82397854 -77201929 + CT-rich Low_complexity Low_complexity 3 59 0 5 1213 413 22 0 0 chr3 82397936 82397982 -77201801 - MMERVK10C-int LTR ERVK -7314 267 222 5 1213 248 191 0 0 chr3 82397982 82398024 -77201759 - RLTR27 LTR ERVK -37 272 231 5 1213 1550 28 0 0 chr3 82398024 82398204 -77201579 - MMERVK10C-int LTR ERVK -7401 180 1 5 1213 3050 33 192 0 chr3 82398204 82398569 -77201214 - RLTR10C LTR ERVK 0 436 2 5 1213 195 42 0 0 chr3 82398569 82398593 -77201190 + (GAAAA)n Simple_repeat Simple_repeat 5 28 0 5 1213 3142 60 0 23 chr3 82399285 82399678 -77200105 - L1Md_F2 LINE L1 0 6582 6199 5 1213 342 115 0 0 chr3 82400325 82400377 -77199406 + (T)n Simple_repeat Simple_repeat 1 52 0 5 1213 5169 142 25 20 chr3 82400447 82401778 -77198005 - L1VL4 LINE L1 -1913 1904 571 5 1213 29 28 0 0 chr3 82401872 82401908 -77197875 + AT_rich Low_complexity Low_complexity 1 36 0 5 1213 231 236 91 91 chr3 82401914 82401960 -77197823 - Helitron1Nb_Mam RC Helitron -968 148 103 5 1213 2648 68 5 27 chr3 82401960 82402336 -77197447 + MTB LTR MaLR 1 368 -32 5 1213 463 160 12 37 chr3 82402447 82402609 -77197174 + (TA)n Simple_repeat Simple_repeat 2 159 0 5 1213 1068 278 18 25 chr3 82402648 82402932 -77196851 - B4 SINE B4 0 292 11 5 1213 321 335 144 6 chr3 82403444 82403624 -77196159 + MLT1E2 LTR MaLR 206 410 -217 5 1213 537 157 0 0 chr3 82403674 82403757 -77196026 + RMER15 LTR ERVL 477 559 -16 5 1213 826 165 84 11 chr3 82403777 82403955 -77195828 + Lx9 LINE L1 7217 7407 -237 5 1213 661 278 133 17 chr3 82404012 82404312 -77195471 + L1MB7 LINE L1 5612 5946 -238 5 1213 234 0 0 0 chr3 82404752 82404778 -77195005 + (CCCCCA)n Simple_repeat Simple_repeat 2 27 0 5 1213 336 168 216 21 chr3 82404858 82404955 -77194828 + RMER21B LTR ERV1 450 565 -277 5 1213 546 16 0 0 chr3 82405163 82405226 -77194557 + (CA)n Simple_repeat Simple_repeat 2 64 0 5 1213 679 336 47 33 chr3 82405283 82405646 -77194137 + MT2A LTR ERVL 1 368 -165 5 1213 340 218 108 35 chr3 82405739 82405939 -77193844 + L1ME3A LINE L1 5756 5972 -192 5 1213 236 259 17 0 chr3 82406172 82406230 -77193553 + (TG)n Simple_repeat Simple_repeat 1 59 0 5 1213 562 294 115 14 chr3 82406232 82406380 -77193403 - RSINE1 SINE B4 0 165 3 5 1213 475 326 0 29 chr3 82406784 82406920 -77192863 + ORR1E LTR MaLR 1 132 -227 5 1213 1894 198 117 23 chr3 82407479 82407956 -77191827 - RLTR11A LTR ERVK -2 526 5 5 1213 22 35 0 0 chr3 82409133 82409162 -77190621 + AT_rich Low_complexity Low_complexity 1 29 0 5 1213 191 173 19 0 chr3 82409326 82409378 -77190405 + (CA)n Simple_repeat Simple_repeat 1 53 0 5 1213 1984 286 71 20 chr3 82409660 82410444 -77189339 - L1MB1 LINE L1 -22 6146 5323 5 1213 233 267 9 0 chr3 82410445 82410550 -77189233 + (TA)n Simple_repeat Simple_repeat 2 107 0 5 1213 591 278 101 94 chr3 82410912 82411068 -77188715 + RMER21B LTR ERV1 268 406 -436 5 1213 222 37 0 0 chr3 82411068 82411095 -77188688 + (CCA)n Simple_repeat Simple_repeat 3 29 0 5 1213 591 278 101 94 chr3 82411095 82411236 -77188547 + RMER21B LTR ERV1 407 567 -275 5 1213 251 295 10 50 chr3 82411348 82411448 -77188335 + RMER21B LTR ERV1 752 847 -100 5 1213 2715 151 19 2 chr3 82412734 82413146 -77186637 + MTC LTR MaLR 1 419 -2 5 1213 882 284 8 21 chr3 82413427 82413668 -77186115 + MTEb LTR MaLR 131 368 -11 5 1213 880 20 0 0 chr3 82413674 82413772 -77186011 - L1Md_F2 LINE L1 -355 6227 6130 5 1213 3482 8 3 0 chr3 82413772 82414138 -77185645 + IAPLTR1_Mm LTR ERVK 1 367 0 5 1213 679 182 25 0 chr3 82414138 82414160 -77185623 - L1_Mus1 LINE L1 -445 6122 6098 5 1213 35939 27 20 3 chr3 82414162 82418265 -77181518 + IAPEz-int LTR ERVK 57 4229 -2252 5 1213 15157 24 2 0 chr3 82418260 82419955 -77179828 + IAPEz-int LTR ERVK 4784 6481 0 5 1213 3482 8 3 0 chr3 82419955 82420321 -77179462 + IAPLTR1_Mm LTR ERVK 1 367 0 5 1213 430 58 0 0 chr3 82420321 82420373 -77179410 - L1Md_F2 LINE L1 -447 6135 6084 5 1213 3037 67 0 8 chr3 82420374 82420752 -77179031 + L1Md_F2 LINE L1 6207 6581 -1 5 1213 185 0 40 0 chr3 82420761 82420786 -77178997 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 5 1213 383 258 50 8 chr3 82422670 82422791 -77176992 - L1MCa LINE L1 -4508 2000 1875 5 1213 247 178 40 27 chr3 82422807 82422882 -77176901 + (TA)n Simple_repeat Simple_repeat 2 77 0 5 1213 552 30 0 0 chr3 82422889 82422955 -77176828 + (TG)n Simple_repeat Simple_repeat 2 67 0 5 1213 209 233 0 16 chr3 82423077 82423138 -77176645 + (TAA)n Simple_repeat Simple_repeat 3 62 0 5 1213 234 62 0 0 chr3 82424441 82424473 -77175310 + (CA)n Simple_repeat Simple_repeat 1 32 0 5 1213 393 75 0 0 chr3 82424473 82424526 -77175257 + (GA)n Simple_repeat Simple_repeat 1 53 0 5 1213 195 91 17 52 chr3 82425773 82425831 -77173952 + A-rich Low_complexity Low_complexity 2 57 0 5 1213 3338 65 10 12 chr3 82425866 82426272 -77173511 + MTB_Mm LTR MaLR 3 407 0 5 1213 943 152 6 6 chr3 82426783 82426962 -77172821 + (TA)n Simple_repeat Simple_repeat 2 180 0 5 1213 22 0 0 0 chr3 82427223 82427245 -77172538 + AT_rich Low_complexity Low_complexity 1 22 0 5 1213 785 192 40 7 chr3 82427414 82427566 -77172217 + B3 SINE B2 60 216 0 5 1213 369 0 0 0 chr3 82428663 82428704 -77171079 + (TG)n Simple_repeat Simple_repeat 1 41 0 5 1213 468 35 0 0 chr3 82428704 82428761 -77171022 + (GA)n Simple_repeat Simple_repeat 1 58 0 5 1213 234 206 0 0 chr3 82428762 82428825 -77170958 + (TG)n Simple_repeat Simple_repeat 2 64 0 5 1213 378 301 116 29 chr3 82429827 82430138 -77169645 + L1MA6 LINE L1 5830 6167 -133 5 1213 257 0 30 0 chr3 82430207 82430240 -77169543 + (TA)n Simple_repeat Simple_repeat 2 35 0 5 1213 507 275 44 16 chr3 82430321 82430572 -77169211 - Charlie2b DNA MER1_type -81 2701 2444 5 1213 483 100 0 0 chr3 82430572 82430642 -77169141 + (TCCC)n Simple_repeat Simple_repeat 4 73 0 5 1213 8017 79 2 2 chr3 82430669 82432206 -77167577 - L1_Mus1 LINE L1 0 6567 5029 5 1213 421 46 7 0 chr3 82432205 82432262 -77167521 - L1_Mur2 LINE L1 -1161 4722 4664 5 1213 328 346 45 50 chr3 82433283 82433505 -77166278 + MER110-int LTR ERV1 2594 2814 -1833 5 1213 902 87 16 0 chr3 82433541 82433667 -77166116 + B1_Mm SINE Alu 11 138 -9 5 1213 351 0 0 0 chr3 82433667 82433706 -77166077 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 5 1213 186 0 57 29 chr3 82435722 82435757 -77164026 + (CAAAA)n Simple_repeat Simple_repeat 4 39 0 5 1213 340 283 62 0 chr3 82435997 82436110 -77163673 + PB1D7 SINE Alu 1 120 0 6 1213 1237 298 82 44 chr3 82436278 82437023 -77162760 - L1_Rod LINE L1 -2838 3009 2237 6 1213 735 312 126 53 chr3 82437008 82437765 -77162018 + L1M2 LINE L1 2990 3801 -2342 6 1213 279 79 0 0 chr3 82438948 82438986 -77160797 + (TGAA)n Simple_repeat Simple_repeat 1 38 0 6 1213 468 172 0 0 chr3 82440847 82440934 -77158849 + CT-rich Low_complexity Low_complexity 1 87 0 6 1213 252 288 94 78 chr3 82442320 82442448 -77157335 + MT2B LTR ERVL 123 252 -349 6 1213 476 248 20 46 chr3 82442345 82442357 -77157426 + ID_B1 SINE B4 77 220 0 6 1213 615 172 59 15 chr3 82442357 82442493 -77157290 + B1F SINE Alu 7 148 -1 6 1214 233 294 22 0 chr3 82444301 82444393 -77155390 - L1M5 LINE L1 -695 5499 5406 6 1214 321 384 89 60 chr3 82445023 82445071 -77154712 - LTR33A LTR ERVL -1 519 470 6 1214 4147 74 5 4 chr3 82445071 82445292 -77154491 - L1Md_F2 LINE L1 -12 6570 6351 6 1214 189 0 0 0 chr3 82445292 82445313 -77154470 + (TGGGGG)n Simple_repeat Simple_repeat 3 23 0 6 1214 4147 74 5 4 chr3 82445313 82445648 -77154135 - L1Md_F2 LINE L1 -232 6350 6014 6 1214 321 384 89 60 chr3 82445648 82445948 -77153835 - LTR33A LTR ERVL -51 469 161 6 1214 242 333 30 0 chr3 82446195 82446294 -77153489 - LTR33A LTR ERVL -392 111 10 6 1214 228 35 0 0 chr3 82446346 82446375 -77153408 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 6 1214 593 298 130 29 chr3 82446503 82446880 -77152903 + Zaphod2 DNA Tip100 1191 1605 -1919 6 1214 793 264 120 34 chr3 82446939 82447205 -77152578 - B4 SINE B4 -2 290 2 6 1214 263 321 202 23 chr3 82447676 82448518 -77151265 + Zaphod2 DNA Tip100 1612 2604 -920 6 1214 480 275 24 63 chr3 82448575 82448616 -77151167 - B3A SINE B2 0 198 156 6 1214 399 21 0 0 chr3 82448616 82448664 -77151119 + (TG)n Simple_repeat Simple_repeat 1 48 0 6 1214 480 275 24 63 chr3 82448664 82448828 -77150955 - B3A SINE B2 -43 155 1 6 1214 424 269 107 24 chr3 82448842 82449048 -77150735 + Zaphod2 DNA Tip100 2703 2925 -599 6 1214 440 316 17 10 chr3 82449075 82449376 -77150407 - L1_Rod LINE L1 -3425 2422 2120 6 1214 660 301 50 3 chr3 82449675 82449978 -77149805 + L1M2 LINE L1 5310 5626 -671 6 1214 2239 108 12 9 chr3 82450201 82450527 -77149256 - ORR1A2 LTR MaLR 0 327 1 6 1214 333 0 0 0 chr3 82450543 82450580 -77149203 + (CA)n Simple_repeat Simple_repeat 2 38 0 6 1214 26 0 0 0 chr3 82450822 82450848 -77148935 + AT_rich Low_complexity Low_complexity 1 26 0 6 1214 1453 329 28 35 chr3 82450986 82451711 -77148072 - Lx8 LINE L1 -1 7472 6753 6 1214 515 253 52 46 chr3 82451721 82451826 -77147957 + Lx8 LINE L1 6548 6660 -813 6 1214 3479 25 2 0 chr3 82451826 82452221 -77147562 - MTA_Mm LTR MaLR 0 396 1 6 1214 9198 32 5 1 chr3 82452221 82453315 -77146468 - MTA_Mm-int LTR MaLR 0 1098 1 6 1214 3479 25 2 0 chr3 82453315 82453710 -77146073 - MTA_Mm LTR MaLR 0 396 1 6 1214 515 253 52 46 chr3 82453710 82453776 -77146007 + Lx8 LINE L1 6661 6720 -753 6 1214 181 314 96 41 chr3 82453993 82454066 -77145717 + L2b LINE L2 3183 3259 -116 6 1214 959 204 32 128 chr3 82454898 82455179 -77144604 + MT2A LTR ERVL 3 256 -277 6 1214 1700 240 45 3 chr3 82455212 82455588 -77144195 + RMER19C LTR ERVK 220 611 0 6 1214 259 290 14 0 chr3 82455588 82455654 -77144129 + MT2A LTR ERVL 356 422 -111 6 1214 31 68 0 0 chr3 82457932 82457991 -77141792 + AT_rich Low_complexity Low_complexity 1 59 0 6 1214 618 209 27 0 chr3 82458573 82458683 -77141100 - ID_B1 SINE B4 -9 215 103 6 1214 390 307 68 22 chr3 82459353 82459603 -77140180 - MTE2a LTR MaLR -3 376 52 6 1214 3197 196 5 0 chr3 82460490 82461050 -77138733 + Lx5 LINE L1 6483 7045 -5 6 1214 222 198 19 77 chr3 82461067 82461171 -77138612 + (TTATA)n Simple_repeat Simple_repeat 3 100 0 6 1214 342 309 99 2 chr3 82461691 82461805 -77137978 - PB1D10 SINE Alu -2 118 1 6 1214 290 296 105 50 chr3 82462461 82462642 -77137141 + ORR1E LTR MaLR 9 199 -160 6 1214 544 302 102 75 chr3 82463462 82463727 -77136056 + B4 SINE B4 2 273 -19 6 1214 435 78 0 0 chr3 82463757 82463821 -77135962 + (TC)n Simple_repeat Simple_repeat 1 64 0 6 1214 482 155 42 0 chr3 82463820 82463988 -77135795 + (CA)n Simple_repeat Simple_repeat 1 175 0 6 1214 252 149 0 0 chr3 82463987 82464034 -77135749 + (TCTCCC)n Simple_repeat Simple_repeat 4 50 0 6 1214 1119 170 32 23 chr3 82464051 82464268 -77135515 + ORR1D1 LTR MaLR 148 366 -8 6 1214 255 312 10 10 chr3 82465117 82465214 -77134569 + GA-rich Low_complexity Low_complexity 1 97 0 6 1214 194 383 36 24 chr3 82465334 82465417 -77134366 - MIR3 SINE MIR -12 196 113 6 1214 842 260 32 158 chr3 82467823 82468240 -77131543 - RMER19A LTR ERVK -191 420 31 6 1214 759 100 0 0 chr3 82468318 82468428 -77131355 + (GGGAA)n Simple_repeat Simple_repeat 5 114 0 6 1214 1136 181 27 54 chr3 82469052 82469274 -77130509 - URR1A DNA MER1_type -6 220 5 6 1214 726 295 102 40 chr3 82469548 82470067 -77129716 - L1MB7 LINE L1 -227 5957 5407 6 1214 1911 199 118 0 chr3 82470078 82470484 -77129299 + MT2A LTR ERVL 3 456 -77 6 1214 191 114 23 0 chr3 82470487 82470531 -77129252 + (TG)n Simple_repeat Simple_repeat 2 46 0 6 1214 434 65 16 0 chr3 82470534 82470596 -77129187 + (GA)n Simple_repeat Simple_repeat 2 64 0 6 1214 563 277 37 30 chr3 82470666 82470830 -77128953 + ID_B1 SINE B4 60 224 0 6 1214 313 279 190 25 chr3 82470996 82471413 -77128370 - L1MB7 LINE L1 -1016 5130 4640 6 1214 1258 298 49 0 chr3 82471414 82471763 -77128020 + MTE2b LTR MaLR 1 366 -13 6 1214 907 291 72 18 chr3 82471766 82472043 -77127740 + MTE2b-int LTR MaLR 2 293 -1287 6 1214 1013 342 37 23 chr3 82472063 82472416 -77127367 + MTE2b-int LTR MaLR 486 843 -737 6 1214 256 232 32 0 chr3 82472576 82472671 -77127112 + L1M4 LINE L1 3354 3451 -2695 6 1214 409 307 31 50 chr3 82472880 82473041 -77126742 - MTE2b LTR MaLR -219 160 3 6 1214 552 291 11 37 chr3 82473048 82473108 -77126675 - MTE2b-int LTR MaLR -5 1575 1516 6 1214 1512 95 0 45 chr3 82473108 82473350 -77126433 - L1Md_F2 LINE L1 0 6582 6352 6 1214 552 291 11 37 chr3 82473350 82473478 -77126305 - MTE2b-int LTR MaLR -65 1515 1392 6 1214 298 375 47 0 chr3 82473726 82473854 -77125929 + ID_B1 SINE B4 70 203 -21 6 1214 538 213 26 77 chr3 82474173 82474186 -77125597 - ID_B1 SINE B4 -6 218 211 6 1214 180 77 0 0 chr3 82474186 82474212 -77125571 + (TTG)n Simple_repeat Simple_repeat 2 27 0 6 1214 538 213 26 77 chr3 82474212 82474315 -77125468 - ID_B1 SINE B4 -14 210 108 6 1214 381 302 67 67 chr3 82474315 82474329 -77125454 - B1F SINE Alu -14 135 13 6 1214 3266 55 2 0 chr3 82474330 82474733 -77125050 + L1_Mus1 LINE L1 6164 6567 0 6 1214 302 74 167 0 chr3 82474750 82474804 -77124979 + Lx2B LINE L1 6244 6306 -694 6 1214 2368 146 15 0 chr3 82474806 82475196 -77124587 + Lx2B LINE L1 6604 6999 -1 6 1214 32 0 0 0 chr3 82475205 82475237 -77124546 + AT_rich Low_complexity Low_complexity 1 32 0 6 1214 836 293 44 108 chr3 82476778 82477371 -77122412 - L1MA4 LINE L1 -370 6632 6032 6 1214 573 85 0 11 chr3 82477371 82477466 -77122317 + Lx LINE L1 6555 6648 -6 6 1214 1108 291 40 76 chr3 82477466 82477915 -77121868 - L1MA4 LINE L1 -518 6031 5638 6 1214 4289 53 0 24 chr3 82477915 82478460 -77121323 - L1_Mus1 LINE L1 0 6567 6036 6 1214 1108 287 38 63 chr3 82478460 82478883 -77120900 - L1MA4 LINE L1 -1141 5704 5274 6 1214 1440 312 82 57 chr3 82478875 82480073 -77119710 - L1MA4 LINE L1 -1914 4931 3704 6 1214 319 317 98 34 chr3 82480413 82480880 -77118903 - L1MA4 LINE L1 -4326 2523 2027 6 1214 734 309 45 8 chr3 82482689 82482953 -77116830 - MER2 DNA MER2_type -47 298 25 6 1214 249 247 32 0 chr3 82484381 82484474 -77115309 + L1MA5 LINE L1 5844 5939 -358 6 1214 2154 102 9 66 chr3 82484574 82484921 -77114862 - ORR1A4 LTR MaLR -2 327 1 6 1214 380 193 0 24 chr3 82484936 82485021 -77114762 + L1_Rod LINE L1 5506 5588 -259 6 1214 447 311 33 0 chr3 82485025 82485269 -77114514 + L1MA5 LINE L1 6049 6300 0 6 1214 207 0 0 0 chr3 82485918 82485941 -77113842 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 6 1214 28 29 0 0 chr3 82486594 82486629 -77113154 + AT_rich Low_complexity Low_complexity 1 35 0 6 1214 186 182 0 0 chr3 82488340 82488373 -77111410 + MIRm SINE MIR 157 189 -87 6 1214 185 255 118 0 chr3 82488341 82488392 -77111391 + L2b LINE L2 3256 3312 -63 6 1214 473 257 94 0 chr3 82488789 82488928 -77110855 + RMER1B Other Other 164 305 -761 6 1214 2058 302 82 20 chr3 82490067 82491096 -77108687 + MERVL_2A-int LTR ERVL 3370 4461 -1300 6 1214 836 166 7 13 chr3 82491117 82491270 -77108513 + RMER17C LTR ERVK 259 410 0 6 1214 1620 279 37 64 chr3 82491271 82491333 -77108450 + MERVL_2A-int LTR ERVL 4410 4471 -1286 6 1214 4379 63 31 27 chr3 82491333 82491918 -77107865 - LTRIS_Mus LTR ERV1 0 587 1 6 1214 1620 279 37 64 chr3 82491918 82492110 -77107673 + MERVL_2A-int LTR ERVL 4472 4657 -1100 6 1214 1352 85 6 0 chr3 82492110 82492287 -77107496 + B2_Mm1t SINE B2 2 179 -14 6 1214 1620 279 37 64 chr3 82492287 82492660 -77107123 + MERVL_2A-int LTR ERVL 4658 5032 -725 6 1214 1995 147 138 21 chr3 82492660 82493036 -77106747 + RLTR9B2 LTR ERVK 1 420 0 6 1214 1620 279 37 64 chr3 82493036 82493113 -77106670 + MERVL_2A-int LTR ERVL 5033 5097 -660 6 1214 267 343 133 104 chr3 82493171 82493275 -77106508 + MLT2B3 LTR ERVL 1 132 -422 6 1214 1083 252 107 12 chr3 82493275 82493601 -77106182 - ORR1E LTR MaLR -2 357 1 6 1214 418 304 80 59 chr3 82493601 82493734 -77106049 + MTC LTR MaLR 110 243 -136 6 1214 267 343 133 104 chr3 82493734 82493841 -77105942 + MLT2B3 LTR ERVL 133 354 -200 6 1214 243 114 0 0 chr3 82494208 82494252 -77105531 + (GA)n Simple_repeat Simple_repeat 1 44 0 6 1214 2031 111 39 60 chr3 82494263 82494599 -77105184 - ORR1A4 LTR MaLR 0 329 1 6 1214 621 152 9 19 chr3 82494617 82494724 -77105059 + MTC LTR MaLR 310 415 -6 6 1214 1350 75 6 0 chr3 82494802 82494976 -77104807 - B2_Mm1t SINE B2 -18 175 1 6 1214 190 288 73 29 chr3 82495235 82495303 -77104480 + MIRb SINE MIR 108 178 -90 6 1214 4299 35 4 0 chr3 82495319 82495827 -77103956 + L1Md_F2 LINE L1 6071 6580 -2 6 1214 408 283 31 8 chr3 82496969 82497097 -77102686 + RMER15 LTR ERVL 1 131 -444 6 1214 306 380 115 0 chr3 82497328 82497520 -77102263 + LTR85b LTR Gypsy? 408 621 -163 6 1214 364 308 115 91 chr3 82498046 82498289 -77101494 + RMER4A LTR ERVK 8 256 -210 6 1214 187 376 70 12 chr3 82498445 82498531 -77101252 + L2a LINE L2 3324 3414 -12 6 1214 560 318 51 43 chr3 82499089 82499342 -77100441 + MER119 DNA MER1_type 104 358 -225 6 1214 1854 210 34 1 chr3 82499457 82499818 -77099965 + ORR1D1 LTR MaLR 1 421 0 6 1214 510 32 65 0 chr3 82500289 82500382 -77099401 + (CA)n Simple_repeat Simple_repeat 2 100 0 1 1214 1514 196 106 12 chr3 82500717 82500781 -77099002 - ORR1C1 LTR MaLR 0 378 310 2 1214 339 25 0 0 chr3 82500781 82500821 -77098962 + (TAA)n Simple_repeat Simple_repeat 1 40 0 3 1214 1514 196 106 12 chr3 82500821 82501097 -77098686 - ORR1C1 LTR MaLR -69 309 6 2 1214 600 260 79 0 chr3 82501537 82501664 -77098119 + RSINE1 SINE B4 4 140 -25 4 1214 203 319 21 21 chr3 82502260 82502356 -77097427 + CT-rich Low_complexity Low_complexity 2 97 0 5 1214 341 236 9 0 chr3 82504449 82504555 -77095228 + (TCTA)n Simple_repeat Simple_repeat 4 110 0 6 1214 2104 286 100 29 chr3 82504750 82505657 -77094126 - RCHARR1 DNA MER1_type 0 974 3 7 1214 540 260 45 8 chr3 82505949 82506081 -77093702 - MTEa LTR MaLR -242 137 1 8 1214 800 327 53 46 chr3 82506324 82506718 -77093065 + MLT1D LTR MaLR 109 505 0 9 1214 567 319 93 20 chr3 82507139 82507477 -77092306 - MLT1F1 LTR MaLR -24 545 147 1 1214 2825 167 6 19 chr3 82509381 82509901 -77089882 - RLTR28 LTR ERVL -11 513 1 1 1214 643 192 46 7 chr3 82510324 82510476 -77089307 + RLTR28 LTR ERVL 327 484 -40 1 1214 902 118 26 13 chr3 82510815 82510970 -77088813 - URR1A DNA MER1_type 0 226 70 1 1214 298 345 92 12 chr3 82511071 82511244 -77088539 - ORR1E LTR MaLR -169 190 4 1 1214 3688 26 0 0 chr3 82512422 82512848 -77086935 + L1Md_T LINE L1 6157 6582 0 1 1214 2587 146 63 20 chr3 82512914 82513419 -77086364 + RLTR11A2 LTR ERVK 1 527 0 1 1214 528 16 0 0 chr3 82514039 82514100 -77085683 + (TG)n Simple_repeat Simple_repeat 2 62 0 1 1214 528 316 88 31 chr3 82516351 82516612 -77083171 - LTR90B LTR LTR -389 407 132 1 1214 1399 89 14 5 chr3 82517800 82518014 -77081769 + L1_Mus3 LINE L1 6422 6637 -1 1 1214 326 215 0 21 chr3 82518178 82518273 -77081510 + CT-rich Low_complexity Low_complexity 3 95 0 2 1214 234 0 0 0 chr3 82518426 82518452 -77081331 + (A)n Simple_repeat Simple_repeat 1 26 0 2 1214 515 288 85 62 chr3 82518634 82519163 -77080620 + L1MDb LINE L1 849 1389 -5020 2 1214 207 0 0 0 chr3 82519451 82519474 -77080309 + (CAGA)n Simple_repeat Simple_repeat 2 24 0 2 1214 194 0 0 37 chr3 82519483 82519510 -77080273 + (CATA)n Simple_repeat Simple_repeat 2 27 0 2 1214 36 0 0 0 chr3 82519787 82519823 -77079960 + AT_rich Low_complexity Low_complexity 1 36 0 2 1214 492 232 164 6 chr3 82519836 82520007 -77079776 + B3 SINE B2 20 194 -1 2 1214 304 253 25 0 chr3 82521356 82521435 -77078348 - ID4 SINE ID -1 82 2 2 1214 204 244 0 0 chr3 82521445 82521490 -77078293 + (TCTA)n Simple_repeat Simple_repeat 2 46 0 2 1214 428 309 41 50 chr3 82522133 82522354 -77077429 + L1MCa LINE L1 175 393 -6115 2 1214 369 350 115 23 chr3 82522499 82522847 -77076936 - L2 LINE L2 -752 2667 2288 3 1214 415 321 102 36 chr3 82523455 82523730 -77076053 + HAL1b LINE L1 318 610 -1399 3 1214 256 341 39 31 chr3 82523972 82524099 -77075684 + MLT1C LTR MaLR 334 461 -6 3 1214 277 157 179 12 chr3 82524670 82524754 -77075029 - Lx6 LINE L1 -5 7455 7358 3 1214 2232 55 27 10 chr3 82524855 82525150 -77074633 + L1_Mus1 LINE L1 6267 6566 -1 3 1214 2071 177 15 20 chr3 82525350 82525743 -77074040 + RLTR25A LTR ERVK 350 740 -363 3 1214 728 196 14 14 chr3 82525716 82525856 -77073927 + RLTR25A LTR ERVK 889 1028 0 3 1214 1291 110 16 0 chr3 82526277 82526459 -77073324 + B2_Mm2 SINE B2 2 186 -9 3 1214 267 352 38 0 chr3 82526636 82526741 -77073042 - PB1D10 SINE Alu -8 109 1 3 1214 261 0 0 0 chr3 82527904 82527933 -77071850 + (A)n Simple_repeat Simple_repeat 1 29 0 3 1214 3840 31 0 2 chr3 82528395 82528884 -77070899 - L1_Mm LINE L1 -386 5497 5010 3 1214 341 205 92 146 chr3 82529055 82529261 -77070522 - Lx8 LINE L1 -268 7205 7011 4 1214 587 209 9 0 chr3 82529500 82529610 -77070173 - B1_Mur4 SINE Alu -38 112 2 4 1214 825 288 14 9 chr3 82529935 82530145 -77069638 + B3 SINE B2 6 216 0 4 1214 905 271 80 46 chr3 82530603 82530993 -77068790 + Lx8 LINE L1 7041 7443 -30 4 1214 320 306 77 104 chr3 82532368 82532733 -77067050 - ORR1E LTR MaLR -3 356 2 4 1214 829 36 18 9 chr3 82532892 82533005 -77066778 + (TAGA)n Simple_repeat Simple_repeat 3 116 0 4 1214 198 0 0 0 chr3 82533005 82533027 -77066756 + (CA)n Simple_repeat Simple_repeat 1 22 0 4 1214 387 0 0 0 chr3 82534687 82534730 -77065053 + (TG)n Simple_repeat Simple_repeat 2 44 0 4 1214 4887 59 28 5 chr3 82534745 82535378 -77064405 - L1Md_F2 LINE L1 -13 6569 5922 4 1214 2484 154 72 17 chr3 82535379 82535849 -77063934 - RLTR28 LTR ERVL -28 496 1 4 1214 839 243 28 6 chr3 82536316 82536494 -77063289 + B3A SINE B2 2 183 -15 5 1214 181 0 0 65 chr3 82537702 82537733 -77062050 + (GTTTG)n Simple_repeat Simple_repeat 3 31 0 5 1214 1303 251 79 6 chr3 82537872 82538225 -77061558 + MTE2b LTR MaLR 1 379 0 5 1214 423 0 0 0 chr3 82538304 82538351 -77061432 + (TG)n Simple_repeat Simple_repeat 1 47 0 5 1214 353 230 110 7 chr3 82538704 82538840 -77060943 - L1MA7 LINE L1 -3 6288 6139 5 1214 640 103 0 18 chr3 82541188 82541297 -77058486 + (TC)n Simple_repeat Simple_repeat 2 108 0 5 1214 1139 76 0 0 chr3 82541303 82541447 -77058336 - B1_Mus1 SINE Alu 0 148 5 5 1214 270 0 0 0 chr3 82541666 82541696 -77058087 + (TTA)n Simple_repeat Simple_repeat 1 30 0 5 1214 387 295 42 10 chr3 82541697 82541793 -77057990 - B1F1 SINE Alu -47 102 4 5 1214 281 314 46 37 chr3 82541928 82542037 -77057746 + MLT1A0 LTR MaLR 21 130 -235 5 1214 198 0 0 0 chr3 82542463 82542485 -77057298 + (TTTA)n Simple_repeat Simple_repeat 4 25 0 6 1214 377 281 0 64 chr3 82542485 82542595 -77057188 - PB1D10 SINE Alu -14 103 1 6 1214 357 277 99 0 chr3 82543604 82543705 -77056078 - PB1D10 SINE Alu -6 111 1 6 1214 221 362 41 41 chr3 82544077 82544175 -77055608 + MIRb SINE MIR 2 99 -169 6 1214 770 133 0 15 chr3 82545080 82545217 -77054566 + (TATATG)n Simple_repeat Simple_repeat 4 138 0 6 1214 447 19 0 0 chr3 82545217 82545269 -77054514 + (GA)n Simple_repeat Simple_repeat 2 53 0 6 1214 256 246 0 16 chr3 82545634 82545696 -77054087 + C-rich Low_complexity Low_complexity 5 65 0 6 1214 1030 123 62 0 chr3 82546049 82546228 -77053555 - B2_Mm1t SINE B2 -1 192 3 6 1214 5126 62 12 0 chr3 82546228 82546869 -77052914 - L1_Mus1 LINE L1 -18 6549 5901 6 1214 306 48 0 0 chr3 82546870 82546912 -77052871 + L1_Mus1 LINE L1 5855 5896 -688 6 1214 669 293 51 34 chr3 82548073 82548348 -77051435 + ORR1E LTR MaLR 1 273 -97 6 1214 366 179 74 0 chr3 82548354 82548449 -77051334 + Lx5 LINE L1 6949 7050 0 7 1214 294 250 73 59 chr3 82550488 82550624 -77049159 - MLT1A1 LTR MaLR 0 408 271 7 1214 2369 162 31 14 chr3 82551456 82551870 -77047913 + MTC LTR MaLR 1 421 0 7 1214 622 276 27 49 chr3 82553203 82553466 -77046317 - RLTR15 LTR ERVK -102 257 1 7 1214 425 292 57 81 chr3 82554050 82554140 -77045643 - Lx8 LINE L1 -998 6475 6386 7 1214 1389 76 5 0 chr3 82554140 82554324 -77045459 - B2_Mm1a SINE B2 -7 186 2 7 1214 425 292 57 81 chr3 82554324 82554442 -77045341 - Lx8 LINE L1 -1088 6385 6272 7 1214 7177 102 21 17 chr3 82554477 82555980 -77043803 - Lx LINE L1 -3 6651 5133 7 1214 350 275 53 0 chr3 82555992 82556123 -77043660 + L1M2 LINE L1 2936 3073 -3070 7 1214 1067 289 50 52 chr3 82556125 82556821 -77042962 + L1M2 LINE L1 3006 3700 -2443 7 1214 2896 254 62 60 chr3 82556821 82557792 -77041991 + RCHARR1 DNA MER1_type 1 973 -1 7 1214 873 126 321 46 chr3 82557923 82558043 -77041740 + URR1B DNA MER1_type 3 158 -67 7 1214 3180 69 17 12 chr3 82558043 82558452 -77041331 - RLTR10A LTR ERVK 0 411 1 8 1214 873 129 6 64 chr3 82558452 82558525 -77041258 + URR1B DNA MER1_type 159 225 0 7 1214 407 373 88 46 chr3 82558933 82559172 -77040611 + MLT-int LTR MaLR 861 1109 -626 8 1214 920 249 69 5 chr3 82559212 82559414 -77040369 + B3 SINE B2 2 216 0 8 1214 329 295 11 0 chr3 82559453 82559548 -77040235 - ORR1E LTR MaLR -220 139 44 8 1214 288 328 8 25 chr3 82559900 82560019 -77039764 + PB1D10 SINE Alu 1 117 0 8 1214 813 131 276 12 chr3 82560079 82560249 -77039534 - B3 SINE B2 0 216 2 8 1214 391 303 53 8 chr3 82560857 82560990 -77038793 + RSINE1 SINE B4 10 148 -17 8 1214 514 263 84 31 chr3 82560993 82561460 -77038323 - L1M2 LINE L1 -617 5683 5037 8 1214 274 291 86 19 chr3 82562083 82562188 -77037595 + MLT1F2 LTR MaLR 56 167 -393 8 1214 1374 7 0 0 chr3 82562499 82562654 -77037129 + (TCTCCC)n Simple_repeat Simple_repeat 5 159 0 8 1214 535 76 0 60 chr3 82562654 82562732 -77037051 - BC1_Mm scRNA scRNA -77 75 2 9 1214 384 292 239 33 chr3 82563172 82563783 -77036000 + L1MA5A LINE L1 4759 5494 -806 9 1214 427 258 0 33 chr3 82563820 82563912 -77035871 + B1F SINE Alu 16 104 -45 9 1214 483 289 111 6 chr3 82563939 82564167 -77035616 + L1MA5A LINE L1 5619 5868 -423 9 1214 268 186 31 2 chr3 82564285 82564349 -77035434 + PB1 SINE Alu 54 124 -3 9 1214 656 271 42 5 chr3 82564357 82564550 -77035233 + MERVL_2A-int LTR ERVL 5298 5497 -264 9 1214 23 33 0 0 chr3 82564608 82564638 -77035145 + AT_rich Low_complexity Low_complexity 1 30 0 9 1214 236 228 0 50 chr3 82564721 82564781 -77035002 + ORR1A3-int LTR MaLR 583 639 -1324 9 1214 435 280 40 8 chr3 82564877 82565003 -77034780 + MTEa LTR MaLR 19 148 -231 9 1214 672 334 134 27 chr3 82564961 82565313 -77034470 + MT2A LTR ERVL 107 517 -37 9 1214 333 0 0 0 chr3 82565313 82565350 -77034433 + (CA)n Simple_repeat Simple_repeat 1 37 0 9 1214 278 314 202 35 chr3 82565350 82565368 -77034415 + MT2A LTR ERVL 518 535 -19 9 1214 899 238 80 8 chr3 82565423 82565878 -77033905 - L1MCa LINE L1 -3662 2659 2161 1 1214 1977 127 9 35 chr3 82566518 82566786 -77032997 - RLTR28 LTR ERVL -187 337 79 1 1214 378 0 0 0 chr3 82566786 82566828 -77032955 + (TTGG)n Simple_repeat Simple_repeat 2 43 0 1 1214 1977 127 9 35 chr3 82566828 82566903 -77032880 - RLTR28 LTR ERVL -446 78 3 1 1214 345 257 50 0 chr3 82566920 82567021 -77032762 - L1MCa LINE L1 -4807 1701 1596 1 1214 407 282 28 33 chr3 82567047 82567227 -77032556 - RLTR15 LTR ERVK -3 356 178 1 1214 412 214 62 90 chr3 82567328 82567472 -77032311 - RLTR15 LTR ERVK -187 172 33 1 1214 270 208 124 38 chr3 82567472 82567577 -77032206 - L1MCa LINE L1 -4922 1586 1473 1 1214 432 135 0 0 chr3 82567611 82567685 -77032098 + (T)n Simple_repeat Simple_repeat 1 74 0 1 1214 4605 48 2 18 chr3 82567716 82568273 -77031510 - L1Md_F3 LINE L1 -1 6583 6036 1 1214 609 15 0 0 chr3 82568273 82568341 -77031442 + L1Md_F3 LINE L1 5985 6052 -530 1 1214 3694 20 5 0 chr3 82568374 82568768 -77031015 + MTA_Mm LTR MaLR 1 396 0 1 1214 9163 47 2 66 chr3 82568768 82569941 -77029842 + MTA_Mm-int LTR MaLR 1 1098 0 1 1214 3140 33 5 30 chr3 82569941 82570254 -77029529 + MTA_Mm LTR MaLR 1 303 -93 1 1214 1961 67 16 8 chr3 82570254 82570509 -77029274 + L1Md_F2 LINE L1 6326 6582 0 1 1214 3140 33 5 30 chr3 82570509 82570601 -77029182 + MTA_Mm LTR MaLR 304 395 -1 1 1214 747 292 58 77 chr3 82570629 82571215 -77028568 - L1MCa LINE L1 -5192 1316 742 1 1214 382 259 123 18 chr3 82571222 82571336 -77028447 - MTE2a LTR MaLR -13 366 241 1 1214 563 296 113 50 chr3 82571350 82571713 -77028070 - L1MCa LINE L1 -6120 388 3 1 1214 765 169 186 26 chr3 82572531 82572725 -77027058 + URR1B DNA MER1_type 1 225 0 1 1214 452 267 35 0 chr3 82573070 82573186 -77026597 - B1F SINE Alu -29 120 1 1 1214 232 317 0 12 chr3 82574256 82574339 -77025444 + (CATA)n Simple_repeat Simple_repeat 4 85 0 1 1214 1527 239 71 24 chr3 82574848 82575340 -77024443 - L1_Rod LINE L1 -73 5774 5260 1 151 1945 301 79 22 chr3 82575354 82576077 -77023706 + Lx9 LINE L1 6565 7328 -316 1 1215 349 284 49 14 chr3 82576192 82576335 -77023448 + Lx9 LINE L1 7348 7495 -149 1 1215 801 320 62 23 chr3 82576449 82576979 -77022804 + L1MA4A LINE L1 5379 5929 -374 1 1215 456 19 0 0 chr3 82577239 82577292 -77022491 + (TTCC)n Simple_repeat Simple_repeat 1 53 0 1 1215 909 130 0 0 chr3 82577292 82577453 -77022330 + (TC)n Simple_repeat Simple_repeat 2 163 0 1 1215 2809 80 148 2 chr3 82577455 82577868 -77021915 - Lx LINE L1 -25 6629 6157 1 1215 672 184 174 58 chr3 82578807 82578997 -77020786 - B3 SINE B2 -4 212 1 1 1215 190 355 0 16 chr3 82579516 82579579 -77020204 + MER5A DNA MER1_type 39 111 -78 1 1215 812 274 16 28 chr3 82579871 82580119 -77019664 - Lx8 LINE L1 -792 6681 6437 1 1215 1775 279 22 18 chr3 82580117 82580617 -77019166 + Lx8 LINE L1 6845 7346 -127 1 1215 601 288 72 33 chr3 82580728 82581087 -77018696 + L1M5 LINE L1 4324 4696 -1450 1 1215 224 200 14 0 chr3 82581087 82581157 -77018626 + (TA)n Simple_repeat Simple_repeat 2 72 0 1 1215 235 229 48 16 chr3 82581184 82581246 -77018537 - Lx8 LINE L1 -121 7352 7289 1 1215 361 231 144 0 chr3 82581409 82581513 -77018270 + B3A SINE B2 80 198 0 1 1215 232 233 17 0 chr3 82581526 82581586 -77018197 + L1MC LINE L1 4762 4822 -1324 1 1215 186 43 0 0 chr3 82581706 82581729 -77018054 + (TCCA)n Simple_repeat Simple_repeat 4 26 0 1 1215 1259 34 7 0 chr3 82581799 82581945 -77017838 + B1_Mus2 SINE Alu 1 147 0 1 1215 277 332 53 49 chr3 82582293 82582556 -77017227 + L1M5 LINE L1 5277 5540 -639 1 1215 501 247 224 7 chr3 82582613 82582760 -77017023 - B3A SINE B2 -17 181 3 1 1215 363 399 84 36 chr3 82583745 82584101 -77015682 + LTR82A LTR ERVL 346 718 -154 1 1215 5889 29 3 0 chr3 82584192 82584847 -77014936 + L1Md_F2 LINE L1 5926 6582 0 1 1215 7749 152 54 9 chr3 82584851 82586248 -77013535 - ORR1A2-int LTR MaLR -332 1460 1 1 1215 2271 91 97 0 chr3 82586248 82586546 -77013237 - ORR1A2 LTR MaLR 0 327 1 1 1215 1801 144 11 4 chr3 82586546 82586818 -77012965 - Lx4A LINE L1 -12 7046 6773 1 1215 289 125 0 0 chr3 82586818 82586858 -77012925 + Lx4A LINE L1 5960 5999 -1059 1 1215 733 189 25 0 chr3 82586859 82586981 -77012802 + B1_Mur4 SINE Alu 13 137 -13 1 1215 237 390 29 0 chr3 82588780 82588916 -77010867 - MIR SINE MIR -122 140 1 1 1215 44 88 0 0 chr3 82589223 82589337 -77010446 + AT_rich Low_complexity Low_complexity 1 114 0 1 1215 257 213 27 0 chr3 82589351 82589426 -77010357 + (TTATA)n Simple_repeat Simple_repeat 5 81 0 1 1215 263 340 48 31 chr3 82590338 82590483 -77009300 + B1F SINE Alu 2 149 0 1 1215 229 342 0 14 chr3 82590486 82590560 -77009223 + ID4_ SINE ID 9 81 -2 1 1215 771 69 0 0 chr3 82590841 82590943 -77008840 + (TCCC)n Simple_repeat Simple_repeat 4 105 0 1 1215 26 30 0 0 chr3 82590962 82590995 -77008788 + AT_rich Low_complexity Low_complexity 1 33 0 1 1215 588 233 0 0 chr3 82593437 82593583 -77006200 + (TG)n Simple_repeat Simple_repeat 1 146 0 1 1215 2115 148 49 11 chr3 82594218 82594587 -77005196 + ORR1C2 LTR MaLR 2 384 0 1 1215 1311 48 0 0 chr3 82594819 82594966 -77004817 + B1_Mus2 SINE Alu 1 147 0 1 1215 323 312 35 44 chr3 82595476 82595617 -77004166 - B3 SINE B2 0 198 48 1 1215 3696 111 88 0 chr3 82595741 82596266 -77003517 + Lx LINE L1 6082 6652 -2 1 1215 498 17 0 0 chr3 82596339 82596398 -77003385 + (GA)n Simple_repeat Simple_repeat 2 60 0 1 1215 680 263 144 5 chr3 82596443 82596638 -77003145 - ID_B1 SINE B4 -1 223 2 1 1215 674 143 0 8 chr3 82596904 82597024 -77002759 + CT-rich Low_complexity Low_complexity 1 119 0 1 1215 192 77 0 0 chr3 82597582 82597608 -77002175 + (TTTTA)n Simple_repeat Simple_repeat 1 26 0 1 1215 588 242 49 13 chr3 82597625 82597827 -77001956 - 7SK RNA RNA -98 233 1 1 1215 355 307 55 16 chr3 82598312 82598494 -77001289 + L1M3e LINE L1 1 189 -6841 1 1215 22 35 0 0 chr3 82599080 82599109 -77000674 + AT_rich Low_complexity Low_complexity 1 29 0 1 1215 425 276 89 47 chr3 82599523 82599781 -77000002 + L1M3e LINE L1 1 269 -6761 1 1215 337 321 55 81 chr3 82599834 82600526 -76999257 + L1M3e LINE L1 1410 2064 -4966 1 1215 1265 244 49 37 chr3 82600583 82600988 -76998795 + L1M3e LINE L1 5452 5861 -1242 1 1215 514 250 7 7 chr3 82601156 82601293 -76998490 + L1M3e LINE L1 5880 6016 -1087 1 1215 194 105 26 0 chr3 82601296 82601334 -76998449 + (TTTC)n Simple_repeat Simple_repeat 2 40 0 1 1215 203 250 15 0 chr3 82601341 82601409 -76998374 + (TG)n Simple_repeat Simple_repeat 1 69 0 1 1215 781 282 145 0 chr3 82601411 82601659 -76998124 - B4A SINE B4 0 292 9 1 1215 350 259 28 62 chr3 82601666 82601810 -76997973 + L1M3e LINE L1 6013 6151 -952 1 1215 859 232 24 34 chr3 82601820 82602025 -76997758 + B3 SINE B2 2 204 -12 1 1215 715 274 75 41 chr3 82602031 82602298 -76997485 + B4A SINE B4 5 280 -12 1 1215 23 54 0 0 chr3 82602340 82602377 -76997406 + AT_rich Low_complexity Low_complexity 1 37 0 1 1215 298 268 53 9 chr3 82602377 82602490 -76997293 + L1MA9 LINE L1 6162 6279 -33 1 1215 2325 146 46 36 chr3 82602697 82603087 -76996696 + ORR1B1 LTR MaLR 1 394 0 1 1215 256 329 168 44 chr3 82603094 82603409 -76996374 - LTR16A LTR ERVL -45 406 53 1 1215 232 196 140 18 chr3 82604650 82604707 -76995076 + MIRc SINE MIR 92 155 -113 1 1215 2438 65 142 12 chr3 82606390 82606735 -76993048 - RLTR10 LTR ERVK 0 390 1 1 1215 23 33 0 0 chr3 82607518 82607548 -76992235 + AT_rich Low_complexity Low_complexity 1 30 0 1 1215 236 337 62 11 chr3 82607548 82607725 -76992058 - LTR82B Low_complexity ERVL -627 203 18 1 1215 2387 73 26 7 chr3 82607739 82608043 -76991740 + L1Md_F2 LINE L1 6261 6570 -12 1 1215 291 93 0 0 chr3 82608048 82608091 -76991692 + (GAAAA)n Simple_repeat Simple_repeat 4 46 0 1 1215 2672 104 74 0 chr3 82608633 82608999 -76990784 + ORR1B1 LTR MaLR 1 393 -1 1 1215 289 271 114 34 chr3 82609095 82609230 -76990553 + MIRb SINE MIR 4 156 -112 1 1215 186 43 0 0 chr3 82609231 82609254 -76990529 + (CA)n Simple_repeat Simple_repeat 2 24 0 1 1215 456 19 0 0 chr3 82610472 82610525 -76989258 + (TG)n Simple_repeat Simple_repeat 2 54 0 1 1215 1943 58 0 0 chr3 82610526 82610752 -76989031 - L1_Mus1 LINE L1 -12 6555 6330 1 1215 823 100 0 0 chr3 82612460 82612580 -76987203 - URR1B DNA MER1_type 0 225 106 1 1215 209 374 37 9 chr3 82612779 82612887 -76986896 - L3 LINE CR1 -150 4339 4229 1 1215 427 320 46 7 chr3 82613743 82613894 -76985889 + RSINE1 SINE B4 2 158 -7 1 1215 279 291 91 98 chr3 82614061 82614335 -76985448 - B4 SINE B4 -18 274 3 1 1215 361 291 110 0 chr3 82614350 82614477 -76985306 - B1F SINE Alu 0 149 9 1 1215 300 291 104 0 chr3 82615367 82615501 -76984282 + B1F1 SINE Alu 1 148 -1 1 1215 280 245 143 41 chr3 82615843 82615941 -76983842 - PB1D10 SINE Alu 0 120 13 1 1215 236 276 51 26 chr3 82615886 82615964 -76983819 + YREP_Mm Unknown Unknown 253 332 -1480 1 1215 279 311 16 70 chr3 82616635 82616763 -76983020 + MIRc SINE MIR 31 151 -117 1 1215 1441 91 92 28 chr3 82617423 82617672 -76982111 - L1_Mus3 LINE L1 -1 6637 6373 1 1215 246 32 0 0 chr3 82617743 82617774 -76982009 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1 1215 295 346 97 42 chr3 82618623 82618840 -76980943 - L2a LINE L2 -4 3422 3194 1 1215 185 143 0 0 chr3 82618871 82618899 -76980884 - L2a LINE L2 -323 3103 3076 1 1215 3311 178 25 212 chr3 82618919 82619475 -76980308 - L1_Mur3 LINE L1 -24 5856 5363 1 1215 1421 96 27 9 chr3 82619475 82619695 -76980088 - Lx3_Mus LINE L1 -7 7002 6779 1 1215 3311 178 25 212 chr3 82619695 82620431 -76979352 - L1_Mur3 LINE L1 -518 5362 4805 1 1215 954 211 8 25 chr3 82620428 82620678 -76979105 + Lx5 LINE L1 5844 6078 -895 1 1215 553 290 10 10 chr3 82621640 82621842 -76977941 + Lx8 LINE L1 7091 7292 -181 1 1215 33 25 0 0 chr3 82621949 82621989 -76977794 + AT_rich Low_complexity Low_complexity 1 40 0 1 1215 236 297 85 59 chr3 82622763 82622881 -76976902 - MTEb LTR MaLR -5 374 254 1 1215 289 355 0 98 chr3 82623055 82623129 -76976654 + B1F SINE Alu 1 64 -85 1 1215 1486 44 5 19 chr3 82623129 82623338 -76976445 + L1Md_F2 LINE L1 6377 6582 0 1 1215 310 306 7 160 chr3 82623338 82623398 -76976385 + ID_B1 SINE B4 157 199 -25 1 1215 289 355 0 98 chr3 82623398 82623416 -76976367 + B1F SINE Alu 65 138 -11 1 1215 459 0 0 0 chr3 82623416 82623467 -76976316 + (TAAA)n Simple_repeat Simple_repeat 2 52 0 1 1215 189 265 67 78 chr3 82624215 82624305 -76975478 - L2a LINE L2 -4 3422 3334 1 1215 519 322 103 0 chr3 82625088 82625262 -76974521 - B3 SINE B2 -19 197 6 1 1215 241 267 116 0 chr3 82626479 82626565 -76973218 - L1M5 LINE L1 -443 5751 5656 1 1215 869 270 52 85 chr3 82626787 82627188 -76972595 + MTD LTR MaLR 1 388 -31 1 1215 21 36 0 0 chr3 82628400 82628428 -76971355 + AT_rich Low_complexity Low_complexity 1 28 0 1 1215 747 206 165 52 chr3 82628428 82628622 -76971161 + B3 SINE B2 1 216 0 2 1215 537 275 132 28 chr3 82629019 82629344 -76970439 + Charlie2b DNA MER1_type 1778 2136 -646 2 1215 228 116 0 44 chr3 82629666 82629711 -76970072 + T-rich Low_complexity Low_complexity 1 43 0 2 1215 199 175 17 17 chr3 82629748 82629806 -76969977 + T-rich Low_complexity Low_complexity 4 61 0 2 1215 343 320 84 7 chr3 82630647 82630801 -76968982 - MIR SINE MIR -13 249 84 2 1215 732 235 36 72 chr3 82632290 82632483 -76967300 + B3A SINE B2 12 197 -1 2 1215 247 314 0 0 chr3 82632518 82632588 -76967195 - MLT2B4 LTR ERVL -147 409 340 2 1215 480 333 110 66 chr3 82632852 82633353 -76966430 - MLT1J-int LTR MaLR -631 756 234 2 1215 1374 50 55 0 chr3 82633640 82633821 -76965962 - B2_Mm2 SINE B2 -2 193 3 2 1215 452 279 62 62 chr3 82633822 82634097 -76965686 + L1M1 LINE L1 5342 5616 -684 2 1215 423 302 62 31 chr3 82634410 82634540 -76965243 + ID_B1 SINE B4 81 214 -10 2 1215 941 136 8 0 chr3 82634556 82634915 -76964868 + (CA)n Simple_repeat Simple_repeat 1 362 0 2 1215 556 233 111 27 chr3 82635050 82635235 -76964548 + B3 SINE B2 1 195 0 2 1215 382 310 76 15 chr3 82635256 82635387 -76964396 + RSINE1 SINE B4 3 141 -24 2 1215 638 174 114 0 chr3 82636388 82636520 -76963263 + B1F2 SINE Alu 1 147 -2 2 1215 1596 207 80 35 chr3 82637631 82638031 -76961752 + MTD LTR MaLR 2 419 0 2 1215 254 286 45 110 chr3 82638414 82638643 -76961140 + MTEb LTR MaLR 178 367 -12 2 1215 213 121 0 0 chr3 82641719 82641752 -76958031 + (T)n Simple_repeat Simple_repeat 1 33 0 2 1215 22 56 0 0 chr3 82641986 82642022 -76957761 + AT_rich Low_complexity Low_complexity 1 36 0 2 1215 237 274 144 26 chr3 82643751 82643946 -76955837 - L1ME3 LINE L1 -190 5972 5755 2 1215 432 292 62 0 chr3 82644207 82644320 -76955463 - B1F2 SINE Alu -20 129 10 2 1215 265 228 25 0 chr3 82644334 82644413 -76955370 - L1M4 LINE L1 -700 5478 5398 2 1215 901 26 9 0 chr3 82647258 82647371 -76952412 + B1_Mus1 SINE Alu 35 148 0 2 1215 570 29 0 0 chr3 82647424 82647492 -76952291 + (GAAAA)n Simple_repeat Simple_repeat 2 69 0 2 1215 404 315 45 5 chr3 82647772 82647970 -76951813 + L1MEg LINE L1 512 717 -5367 2 1215 495 282 133 44 chr3 82648264 82648459 -76951324 + B4A SINE B4 47 270 -22 2 1215 480 77 0 0 chr3 82648459 82648524 -76951259 + (CA)n Simple_repeat Simple_repeat 1 65 0 2 1215 495 282 133 44 chr3 82648524 82648554 -76951229 + B4A SINE B4 271 292 0 2 1215 232 299 32 110 chr3 82649267 82649421 -76950362 + B4 SINE B4 2 143 -149 2 1215 7849 119 19 8 chr3 82649748 82651046 -76948737 + L1_Mur2 LINE L1 4559 5870 -7 2 1215 5624 128 61 18 chr3 82651046 82652027 -76947756 + RLTR13D5 LTR ERVK 1 1023 0 2 1215 6918 159 76 27 chr3 82652027 82653137 -76946646 + Lx4B LINE L1 5873 7056 -2 2 1215 417 123 0 0 chr3 82653795 82653860 -76945923 + (TC)n Simple_repeat Simple_repeat 1 65 0 2 1215 1710 198 99 42 chr3 82654000 82654384 -76945399 - MTD LTR MaLR -1 418 13 2 1215 4893 243 39 58 chr3 82654805 82656201 -76943582 + ORR1C2-int LTR MaLR 1 1370 0 2 1215 1722 193 30 82 chr3 82656201 82656302 -76943481 + ORR1C2 LTR MaLR 1 84 -300 2 1215 3856 49 21 0 chr3 82656302 82656775 -76943008 + L1Md_F2 LINE L1 6087 6569 -13 2 1215 207 0 0 0 chr3 82656782 82656805 -76942978 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 2 1215 1722 193 30 82 chr3 82656805 82656818 -76942965 + ORR1C2 LTR MaLR 91 99 -285 2 1215 551 53 13 0 chr3 82656818 82656893 -76942890 + (GAAA)n Simple_repeat Simple_repeat 2 77 0 2 1215 1722 193 30 82 chr3 82656893 82657170 -76942613 + ORR1C2 LTR MaLR 100 380 -4 2 1215 460 234 37 18 chr3 82657461 82657570 -76942213 + PB1D10 SINE Alu 2 112 -5 2 1215 233 365 23 57 chr3 82657707 82657884 -76941899 - L3 LINE CR1 -223 4266 4096 2 1215 339 331 39 73 chr3 82658767 82658946 -76940837 - B3A SINE B2 -14 184 12 2 1215 328 273 127 51 chr3 82659897 82660094 -76939689 - B3 SINE B2 -4 212 1 2 1215 473 276 88 67 chr3 82660315 82660509 -76939274 - B3A SINE B2 0 198 1 2 1215 283 200 14 69 chr3 82660603 82660748 -76939035 + (TTATA)n Simple_repeat Simple_repeat 2 138 0 2 1215 434 325 16 0 chr3 82661119 82661242 -76938541 + ID_B1 SINE B4 100 224 0 2 1215 315 0 0 0 chr3 82661471 82661506 -76938277 + (CA)n Simple_repeat Simple_repeat 2 36 0 2 1215 885 212 260 110 chr3 82661739 82662174 -76937609 + RLTR18B LTR ERVK 1 500 -12 2 1215 186 118 0 0 chr3 82662174 82662208 -76937575 + (CA)n Simple_repeat Simple_repeat 2 35 0 2 1215 649 186 121 0 chr3 82662424 82662548 -76937235 + B1_Mur4 SINE Alu 1 139 -11 2 1215 219 292 0 0 chr3 82662587 82662635 -76937148 + (CAGG)n Simple_repeat Simple_repeat 1 48 0 2 1215 470 245 10 0 chr3 82662742 82662844 -76936939 + B1_Mur1 SINE Alu 27 129 -20 2 1215 580 237 76 8 chr3 82663025 82663157 -76936626 + B1_Mur1 SINE Alu 3 143 -6 2 1215 27 0 0 0 chr3 82664482 82664509 -76935274 + AT_rich Low_complexity Low_complexity 1 27 0 2 1215 233 319 14 27 chr3 82664630 82664704 -76935079 + PB1D10 SINE Alu 38 110 -7 2 1215 472 326 71 11 chr3 82666324 82666507 -76933276 - RMER30 DNA MER1_type -1 201 8 2 1215 1829 219 43 0 chr3 82666519 82666917 -76932866 + MTD LTR MaLR 5 419 0 2 1215 23 0 0 0 chr3 82668821 82668844 -76930939 + AT_rich Low_complexity Low_complexity 1 23 0 2 1215 408 314 0 75 chr3 82671311 82671445 -76928338 - B4 SINE B4 -163 129 6 2 1215 472 225 11 22 chr3 82671654 82671745 -76928038 + 5S rRNA rRNA 1 90 -31 2 1215 785 164 65 7 chr3 82672163 82672316 -76927467 + URR1A DNA MER1_type 65 226 0 2 1215 288 306 143 12 chr3 82672353 82672512 -76927271 + MIR SINE MIR 23 208 -60 2 1215 850 55 9 0 chr3 82672621 82672730 -76927053 - B1_Mus2 SINE Alu 0 147 38 2 1215 322 239 0 15 chr3 82672678 82672746 -76927037 - 4.5SRNA scRNA scRNA -8 86 20 2 1215 1097 77 0 13 chr3 82672949 82673107 -76926676 + (GAAA)n Simple_repeat Simple_repeat 3 158 0 2 1215 420 170 9 19 chr3 82673113 82673221 -76926562 + GA-rich Low_complexity Low_complexity 2 108 0 2 1215 217 354 12 0 chr3 82673238 82673320 -76926463 - MIRc SINE MIR -164 104 22 2 1215 200 230 261 11 chr3 82673361 82673449 -76926334 - L2a LINE L2 -15 3411 3302 2 1215 1157 179 29 0 chr3 82673566 82673773 -76926010 + URR1B DNA MER1_type 13 225 0 2 1215 1013 307 86 35 chr3 82673831 82674260 -76925523 + MT2A LTR ERVL 70 520 -13 2 1215 180 331 89 15 chr3 82674261 82674396 -76925387 - L2a LINE L2 -243 3183 3039 2 1215 201 108 0 0 chr3 82674408 82674445 -76925338 + (CAGAGA)n Simple_repeat Simple_repeat 4 40 0 2 1215 192 261 71 14 chr3 82674816 82674886 -76924897 - L2a LINE L2 -929 2490 2417 2 1215 925 279 127 12 chr3 82675031 82675361 -76924422 + MTE2a LTR MaLR 9 376 -3 2 1215 314 318 153 38 chr3 82675584 82675872 -76923911 + L1MC LINE L1 5502 5822 -2060 2 1215 888 268 10 10 chr3 82675887 82676094 -76923689 + B3 SINE B2 8 214 -2 2 1215 392 211 91 55 chr3 82676387 82676497 -76923286 - PB1D10 SINE Alu -3 114 1 2 1215 677 223 0 26 chr3 82677415 82677567 -76922216 + B1_Mur2 SINE Alu 2 149 0 2 1215 292 164 213 0 chr3 82677761 82677822 -76921961 - PB1D10 SINE Alu -18 99 26 2 1215 300 263 114 0 chr3 82678016 82678113 -76921670 + B3A SINE B2 97 202 -14 2 1215 418 256 127 37 chr3 82681964 82682098 -76917685 + B3 SINE B2 1 146 -70 2 1215 243 103 0 0 chr3 82682098 82682137 -76917646 + (CA)n Simple_repeat Simple_repeat 1 39 0 2 1215 21 36 0 0 chr3 82682147 82682175 -76917608 + AT_rich Low_complexity Low_complexity 1 28 0 2 1215 553 222 10 0 chr3 82684705 82684804 -76914979 + B3 SINE B2 2 101 -115 2 1215 414 0 0 0 chr3 82684932 82684978 -76914805 + (TG)n Simple_repeat Simple_repeat 2 47 0 2 1215 1810 300 43 65 chr3 82685659 82686651 -76913132 - L1_Mur3 LINE L1 -1765 4115 3146 2 1215 402 311 59 62 chr3 82686668 82687024 -76912759 - L1_Mur3 LINE L1 -2851 3029 2675 2 1215 1476 226 21 24 chr3 82687043 82687383 -76912400 + Lx4B LINE L1 6268 6606 -452 2 1215 283 309 115 32 chr3 82687386 82687598 -76912185 - L1_Rod LINE L1 -3613 2234 2007 2 1215 187 31 30 30 chr3 82687598 82687631 -76912152 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 2 1215 380 276 8 16 chr3 82687631 82687756 -76912027 - L1M2 LINE L1 -4232 2617 2494 2 1215 633 275 0 20 chr3 82687833 82687985 -76911798 - B1_Mur1 SINE Alu 0 149 1 2 1215 1003 286 91 24 chr3 82688472 82688812 -76910971 - MTE2b LTR MaLR -16 363 1 2 1215 219 36 0 0 chr3 82689240 82689268 -76910515 + (CA)n Simple_repeat Simple_repeat 1 28 0 2 1215 27 0 0 0 chr3 82690089 82690116 -76909667 + AT_rich Low_complexity Low_complexity 1 27 0 2 1215 689 272 83 6 chr3 82690502 82690683 -76909100 - B3A SINE B2 -3 195 1 2 1215 722 175 7 14 chr3 82690783 82690928 -76908855 + ORR1C2 LTR MaLR 1 144 -240 2 1215 2109 212 86 8 chr3 82691006 82691495 -76908288 - MT2A LTR ERVL 0 533 7 2 1215 1574 186 60 58 chr3 82691732 82692114 -76907669 - ORR1C2 LTR MaLR -1 383 1 2 1215 6941 213 54 68 chr3 82692394 82694464 -76905319 - Lx6 LINE L1 -4 7456 5421 2 1215 598 277 56 19 chr3 82695326 82695488 -76904295 - B3 SINE B2 0 216 49 2 1215 280 302 75 45 chr3 82695768 82695969 -76903814 - LTR73 LTR ERV1 -363 209 3 2 1215 287 276 0 0 chr3 82697000 82697058 -76902725 - RSINE1 SINE B4 -100 65 8 2 1215 1487 146 0 54 chr3 82697066 82697305 -76902478 + URR1A DNA MER1_type 1 226 0 2 1215 432 241 8 51 chr3 82698401 82698519 -76901264 + PB1D9 SINE Alu 2 114 -6 2 1215 278 164 57 43 chr3 82699126 82699196 -76900587 - B1F SINE Alu -20 129 59 2 1215 352 275 22 11 chr3 82699197 82699289 -76900494 - ID_B1 SINE B4 -33 191 99 3 1215 794 248 39 19 chr3 82699301 82699507 -76900276 - B3 SINE B2 0 216 7 3 1215 1296 112 45 0 chr3 82701661 82701840 -76897943 + B2_Mm2 SINE B2 2 188 -7 3 1215 214 339 0 0 chr3 82702010 82702075 -76897708 - PB1 SINE Alu -10 117 53 3 1215 501 253 31 159 chr3 82702111 82702337 -76897446 - B3A SINE B2 0 198 2 3 1215 595 228 20 52 chr3 82702351 82702504 -76897279 - B1_Mur2 SINE Alu -1 148 1 3 1215 23 33 0 0 chr3 82702767 82702797 -76896986 + AT_rich Low_complexity Low_complexity 1 30 0 3 1215 652 318 69 0 chr3 82702953 82703142 -76896641 + ID_B1 SINE B4 6 207 -17 3 1215 279 264 0 14 chr3 82703193 82703266 -76896517 + CT-rich Low_complexity Low_complexity 3 74 0 3 1215 673 277 85 5 chr3 82703309 82703498 -76896285 + ID_B1 SINE B4 6 209 -15 3 1215 263 28 0 27 chr3 82703500 82703537 -76896246 + (TTTTG)n Simple_repeat Simple_repeat 2 37 0 3 1215 711 323 93 67 chr3 82703770 82704086 -76895697 + Lx8 LINE L1 6987 7316 -157 3 1215 2085 181 30 3 chr3 82704086 82704452 -76895331 + ORR1C1 LTR MaLR 3 378 0 3 1215 711 323 93 67 chr3 82704452 82704610 -76895173 + Lx8 LINE L1 7317 7473 0 3 1215 465 34 0 0 chr3 82704693 82704752 -76895031 + (TG)n Simple_repeat Simple_repeat 1 59 0 3 1215 545 323 12 42 chr3 82704758 82704923 -76894860 - RSINE1 SINE B4 -2 163 4 3 1215 24 0 0 0 chr3 82704985 82705009 -76894774 + AT_rich Low_complexity Low_complexity 1 24 0 3 1215 525 291 54 27 chr3 82705114 82705298 -76894485 + B3A SINE B2 1 189 -9 3 1215 984 16 205 0 chr3 82705891 82706013 -76893770 + B1_Mm SINE Alu 1 147 0 3 1215 294 132 0 0 chr3 82706013 82706066 -76893717 + (A)n Simple_repeat Simple_repeat 1 53 0 3 1216 1185 38 40 3 chr3 82708796 82709152 -76890631 + (TC)n Simple_repeat Simple_repeat 1 369 0 3 1216 1142 59 15 0 chr3 82709152 82709288 -76890495 - B1_Mus1 SINE Alu -10 138 1 3 1216 689 206 76 0 chr3 82709989 82710120 -76889663 + B1_Mur1 SINE Alu 2 142 -7 3 1216 243 261 174 0 chr3 82710270 82710339 -76889444 + ID4 SINE ID 1 81 -2 3 1216 538 230 44 9 chr3 82710639 82710753 -76889030 - PB1D9 SINE Alu -1 119 2 3 1216 699 220 279 36 chr3 82711054 82711412 -76888371 - Lx7 LINE L1 0 7696 7252 3 1216 1046 189 40 50 chr3 82711400 82711678 -76888105 - L1_Mur3 LINE L1 -2630 3250 2976 3 1216 1849 212 107 12 chr3 82711674 82712355 -76887428 - L1_Mur3 LINE L1 -4345 1535 787 3 1216 308 250 304 4 chr3 82712530 82712783 -76887000 - L1MC4 LINE L1 -40 8002 7674 3 1216 279 214 77 22 chr3 82712883 82712974 -76886809 - L1MC4 LINE L1 -518 7524 7429 3 1216 243 295 90 0 chr3 82713000 82713078 -76886705 + MER90a LTR ERV1 21 105 -509 3 1216 448 234 36 27 chr3 82713101 82713211 -76886572 - B3 SINE B2 -14 202 92 3 1216 222 37 0 0 chr3 82713462 82713489 -76886294 + (TG)n Simple_repeat Simple_repeat 1 27 0 3 1216 473 259 62 48 chr3 82713495 82713641 -76886142 - RSINE1 SINE B4 -16 149 2 3 1216 544 260 0 123 chr3 82713845 82714016 -76885767 + B3 SINE B2 9 158 -58 3 1216 899 207 72 48 chr3 82714115 82714323 -76885460 - B3 SINE B2 -3 213 1 3 1216 344 254 25 50 chr3 82715026 82715146 -76884637 + RLTR23 LTR ERV1 314 430 0 3 1216 321 275 12 0 chr3 82715602 82715682 -76884101 + ID4_ SINE ID 3 83 0 3 1216 333 254 59 8 chr3 82715930 82716049 -76883734 - RMER15 LTR ERVL -17 558 434 3 1216 2683 160 50 38 chr3 82716345 82716866 -76882917 + RLTR11A2 LTR ERVK 1 527 0 3 1216 505 0 31 0 chr3 82717288 82717353 -76882430 + (CA)n Simple_repeat Simple_repeat 2 68 0 3 1216 240 35 0 0 chr3 82719282 82719311 -76880472 + (TTG)n Simple_repeat Simple_repeat 2 30 0 3 1216 21 0 0 0 chr3 82719366 82719387 -76880396 + AT_rich Low_complexity Low_complexity 1 21 0 3 1216 183 80 0 0 chr3 82719553 82719578 -76880205 + (TTTA)n Simple_repeat Simple_repeat 4 28 0 3 1216 665 248 7 14 chr3 82719585 82719732 -76880051 - ORR1D2 LTR MaLR -224 146 1 3 1216 289 269 0 25 chr3 82720598 82720678 -76879105 + CT-rich Low_complexity Low_complexity 3 80 0 3 1216 725 165 11 11 chr3 82720681 82720771 -76879012 + polypyrimidine Low_complexity Low_complexity 90 178 0 3 1216 3360 39 39 0 chr3 82720771 82721152 -76878631 + MTA_Mm LTR MaLR 1 396 0 3 1216 725 165 11 11 chr3 82721152 82721239 -76878544 + polypyrimidine Low_complexity Low_complexity 2 89 0 3 1216 273 304 0 0 chr3 82721243 82721312 -76878471 + CT-rich Low_complexity Low_complexity 3 71 0 3 1216 319 271 105 21 chr3 82721313 82721456 -76878327 - HAL1-3A_ME LINE L1 -419 2439 2285 3 1216 426 284 250 0 chr3 82721731 82721907 -76877876 - MTE2b LTR MaLR -11 368 149 3 1216 240 143 0 0 chr3 82722057 82722099 -76877684 + (CTTG)n Simple_repeat Simple_repeat 2 43 0 3 1216 1710 184 46 43 chr3 82722099 82722450 -76877333 + ORR1B1 LTR MaLR 3 354 -40 3 1216 8200 51 3 8 chr3 82722450 82723509 -76876274 + L1_Mus1 LINE L1 5514 6567 0 3 1216 409 57 0 0 chr3 82723525 82723578 -76876205 + ORR1B1 LTR MaLR 340 392 -2 3 1216 237 65 0 0 chr3 82723582 82723613 -76876170 + (CTTG)n Simple_repeat Simple_repeat 4 34 0 3 1216 601 247 27 27 chr3 82724008 82724158 -76875625 - MTE2b LTR MaLR -229 150 1 3 1216 232 286 70 26 chr3 82724565 82724680 -76875103 - ORR1E LTR MaLR -239 120 1 3 1216 22327 49 5 0 chr3 82725201 82727956 -76871827 + L1Md_F3 LINE L1 2818 5586 -297 3 1216 8315 38 5 4 chr3 82727956 82729010 -76870773 + L1Md_F3 LINE L1 5587 6584 0 3 1216 442 259 35 0 chr3 82729038 82729154 -76870629 + PB1D7 SINE Alu 1 120 0 3 1216 643 196 14 7 chr3 82729205 82729349 -76870434 - URR1A DNA MER1_type -4 222 78 3 1216 267 325 0 0 chr3 82729443 82729523 -76870260 - ID4 SINE ID -1 82 3 3 1216 186 373 103 0 chr3 82729523 82729649 -76870134 - L2b LINE L2 -16 3359 3221 3 1216 288 0 0 0 chr3 82729747 82729779 -76870004 + (CAGA)n Simple_repeat Simple_repeat 2 33 0 3 1216 209 211 18 0 chr3 82729781 82729838 -76869945 + GA-rich Low_complexity Low_complexity 1 58 0 3 1216 444 307 117 34 chr3 82730901 82731140 -76868643 - B4A SINE B4 -28 264 6 3 1216 1175 75 0 0 chr3 82732854 82733000 -76866783 + B1_Mus2 SINE Alu 2 147 0 3 1216 1866 123 42 0 chr3 82733290 82733598 -76866185 + ORR1A4 LTR MaLR 1 321 -8 3 1216 200 35 35 0 chr3 82733781 82733810 -76865973 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 3 1216 1207 56 0 0 chr3 82733815 82733957 -76865826 - B1_Mus1 SINE Alu -5 143 2 3 1216 637 233 33 7 chr3 82734055 82734206 -76865577 - MTE2b LTR MaLR -9 370 216 3 1216 1491 200 98 34 chr3 82734317 82734548 -76865235 + RLTR14 LTR ERV1 3 242 -140 3 1216 1565 0 0 11 chr3 82734548 82734730 -76865053 + (CTTTG)n Simple_repeat Simple_repeat 1 180 0 3 1216 1491 200 98 34 chr3 82734730 82734855 -76864928 + RLTR14 LTR ERV1 243 382 0 3 1216 7610 58 12 34 chr3 82735271 82735927 -76863856 - L1_Mus2 LINE L1 0 6566 5932 3 1216 1118 72 0 0 chr3 82735927 82736065 -76863718 - B1_Mm SINE Alu -9 138 1 3 1216 7610 69 15 21 chr3 82736065 82736627 -76863156 - L1_Mus2 LINE L1 -635 5931 5360 3 1216 7180 98 34 80 chr3 82736624 82737881 -76861902 + L1_Mus2 LINE L1 4178 5376 -507 3 1216 230 178 67 0 chr3 82738806 82738851 -76860932 + MTE2a LTR MaLR 216 263 -116 3 1216 266 276 104 16 chr3 82738857 82738982 -76860801 + Tigger6a DNA MER2_type 1 136 -947 3 1216 325 325 107 38 chr3 82739004 82739419 -76860364 + Tigger6a DNA MER2_type 273 719 -364 3 1216 613 237 111 20 chr3 82740014 82740212 -76859571 + B3 SINE B2 1 216 0 3 1216 868 318 0 44 chr3 82740438 82740731 -76859052 + B4 SINE B4 11 290 -2 3 1216 221 57 29 0 chr3 82740958 82740993 -76858790 + (TA)n Simple_repeat Simple_repeat 2 37 0 3 1216 353 259 0 36 chr3 82741645 82741729 -76858054 - ID4 SINE ID -1 82 2 3 1216 401 177 85 37 chr3 82742036 82742118 -76857665 + Lx8 LINE L1 7190 7275 -198 3 1216 3219 231 93 44 chr3 82742117 82743023 -76856760 - Lx9 LINE L1 -354 7290 6341 3 1216 505 309 3 81 chr3 82743198 82743494 -76856289 - L1MC LINE L1 -1830 4316 4044 3 1216 620 278 6 30 chr3 82744010 82744177 -76855606 + RSINE1 SINE B4 3 165 0 3 1216 281 77 39 0 chr3 82744246 82744298 -76855485 + (CAGAGA)n Simple_repeat Simple_repeat 2 55 0 3 1216 301 272 42 53 chr3 82744400 82744590 -76855193 - L1ME3A LINE L1 -227 5946 5759 3 1216 415 337 82 56 chr3 82746124 82746239 -76853544 + MER20B DNA MER1_type 83 206 -577 3 1216 982 181 13 75 chr3 82746239 82746466 -76853317 + B3 SINE B2 1 213 -3 3 1216 415 337 82 56 chr3 82746466 82746659 -76853124 + MER20B DNA MER1_type 207 392 -391 3 1216 1033 198 54 10 chr3 82746659 82746863 -76852920 + B3 SINE B2 1 213 -3 3 1216 415 337 82 56 chr3 82746863 82746943 -76852840 + MER20B DNA MER1_type 393 482 -301 3 1216 2423 135 16 0 chr3 82747143 82747514 -76852269 - RLTR30 LTR ERV1 0 379 3 3 1216 405 274 43 0 chr3 82748105 82748222 -76851561 + B1_Mur1 SINE Alu 6 127 -22 3 1216 369 0 0 0 chr3 82748327 82748368 -76851415 + (TA)n Simple_repeat Simple_repeat 1 41 0 3 1216 241 340 152 23 chr3 82748853 82749163 -76850620 - L2 LINE L2 -398 3021 2672 3 1216 342 0 0 0 chr3 82749211 82749249 -76850534 + (TG)n Simple_repeat Simple_repeat 2 39 0 3 1216 819 289 51 75 chr3 82749255 82749746 -76850037 - MT2A LTR ERVL -54 479 1 3 1216 231 312 187 16 chr3 82749927 82750360 -76849423 - L2 LINE L2 -958 2461 1955 3 1216 210 37 0 0 chr3 82751377 82751404 -76848379 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 3 1216 967 32 0 0 chr3 82751406 82751529 -76848254 - B1_Mus2 SINE Alu -6 141 19 3 1216 1168 237 31 54 chr3 82752474 82752826 -76846957 + ORR1E LTR MaLR 1 344 -15 3 1216 214 286 114 0 chr3 82752950 82753020 -76846763 + PB1 SINE Alu 27 104 -23 3 1216 668 281 47 5 chr3 82753658 82753869 -76845914 - ID_B1 SINE B4 0 224 5 3 1216 318 67 0 0 chr3 82754112 82754157 -76845626 + (GA)n Simple_repeat Simple_repeat 2 46 0 3 1216 355 272 11 11 chr3 82755321 82755414 -76844369 - PB1D10 SINE Alu -15 102 10 3 1216 424 268 144 33 chr3 82755579 82755849 -76843934 - L2a LINE L2 0 3426 3127 3 1216 501 17 0 0 chr3 82756486 82756544 -76843239 + (CA)n Simple_repeat Simple_repeat 2 59 0 4 1216 770 276 37 0 chr3 82756968 82757182 -76842601 + ID_B1 SINE B4 3 224 0 4 1216 234 296 176 45 chr3 82757497 82757566 -76842217 - L2a LINE L2 -570 2849 2776 3 1216 432 0 0 0 chr3 82757566 82757614 -76842169 + (TG)n Simple_repeat Simple_repeat 2 49 0 4 1216 234 296 176 45 chr3 82757614 82757788 -76841995 - L2a LINE L2 -644 2775 2574 3 1216 351 0 0 0 chr3 82759680 82759719 -76840064 + (TG)n Simple_repeat Simple_repeat 2 40 0 4 1216 274 359 103 29 chr3 82760556 82760972 -76838811 + L2 LINE L2 1669 2115 -1304 4 1216 25 31 0 0 chr3 82761226 82761258 -76838525 + AT_rich Low_complexity Low_complexity 1 32 0 4 1216 440 165 11 0 chr3 82761934 82762025 -76837758 + (TATATG)n Simple_repeat Simple_repeat 1 92 0 4 1216 409 222 29 48 chr3 82762552 82762656 -76837127 - B3 SINE B2 -10 206 105 4 1216 1249 215 133 6 chr3 82762702 82763025 -76836758 - MTD LTR MaLR -29 390 27 4 1216 228 200 0 0 chr3 82763808 82763858 -76835925 + GA-rich Low_complexity Low_complexity 4 53 0 4 1216 211 226 0 19 chr3 82764798 82764852 -76834931 + CT-rich Low_complexity Low_complexity 2 54 0 4 1216 772 187 0 54 chr3 82766311 82766458 -76833325 + B1_Mur1 SINE Alu 5 143 -6 4 1216 24 32 0 0 chr3 82767236 82767267 -76832516 + AT_rich Low_complexity Low_complexity 1 31 0 4 1216 204 40 0 0 chr3 82767623 82767648 -76832135 + (CA)n Simple_repeat Simple_repeat 2 26 0 4 1216 4076 278 19 23 chr3 82767648 82768828 -76830955 - Lx9 LINE L1 -139 7505 6331 4 1216 308 299 17 25 chr3 82771462 82771582 -76828201 + L1MA5 LINE L1 6153 6271 -29 4 1216 864 139 162 0 chr3 82771826 82771999 -76827784 + B3 SINE B2 4 204 -12 4 1216 216 0 0 0 chr3 82772108 82772132 -76827651 + (TC)n Simple_repeat Simple_repeat 1 24 0 4 1216 420 254 26 26 chr3 82772161 82772278 -76827505 - PB1D10 SINE Alu 0 117 1 4 1216 21 0 0 0 chr3 82772548 82772569 -76827214 + AT_rich Low_complexity Low_complexity 1 21 0 4 1216 249 33 0 0 chr3 82772692 82772722 -76827061 + (TG)n Simple_repeat Simple_repeat 2 31 0 4 1216 666 142 44 0 chr3 82773104 82773217 -76826566 + B3 SINE B2 1 118 -98 4 1216 27 0 0 0 chr3 82773225 82773252 -76826531 + AT_rich Low_complexity Low_complexity 1 27 0 4 1216 236 255 0 18 chr3 82773401 82773457 -76826326 + ID4 SINE ID 2 56 -27 4 1216 354 211 0 0 chr3 82773461 82773570 -76826213 + (CA)n Simple_repeat Simple_repeat 2 110 0 4 1216 330 80 0 0 chr3 82774347 82774397 -76825386 + (TG)n Simple_repeat Simple_repeat 2 51 0 4 1216 300 288 107 89 chr3 82774407 82774575 -76825208 - B3A SINE B2 -25 173 3 4 1216 455 208 32 152 chr3 82775596 82775721 -76824062 + B3 SINE B2 19 134 -82 4 1216 733 179 67 7 chr3 82775889 82776024 -76823759 + B1_Mur2 SINE Alu 5 147 -2 4 1216 2987 24 0 0 chr3 82776447 82776784 -76822999 + IAPLTR1a_Mm LTR ERVK 1 337 0 4 1216 57457 20 8 8 chr3 82776784 82783261 -76816522 + IAPEz-int LTR ERVK 8 6481 0 4 1216 2987 24 0 0 chr3 82783261 82783598 -76816185 + IAPLTR1a_Mm LTR ERVK 1 337 0 4 1216 608 325 99 10 chr3 82784246 82784562 -76815221 - ORR1D2 LTR MaLR -15 344 1 4 1216 320 209 11 0 chr3 82785324 82785415 -76814368 + (TG)n Simple_repeat Simple_repeat 1 92 0 4 1216 601 247 24 60 chr3 82785415 82785583 -76814200 - RSINE1 SINE B4 0 165 4 4 1216 512 279 36 0 chr3 82786311 82786451 -76813332 - B1F SINE Alu 0 149 5 4 1216 346 265 78 7 chr3 82786538 82786752 -76813031 + L1MD LINE L1 4966 5204 -942 4 1216 387 336 41 0 chr3 82787469 82787615 -76812168 - RSINE1 SINE B4 -10 155 4 4 1216 2051 148 22 3 chr3 82788990 82789355 -76810428 + Lx LINE L1 6274 6645 -9 4 1216 24 0 0 0 chr3 82789365 82789389 -76810394 + AT_rich Low_complexity Low_complexity 1 24 0 4 1216 739 209 0 35 chr3 82789400 82789544 -76810239 + B1_Mus1 SINE Alu 1 139 -9 4 1216 1482 53 32 0 chr3 82789622 82789809 -76809974 + B2_Mm2 SINE B2 1 193 -2 4 1216 256 305 12 12 chr3 82790088 82790171 -76809612 + CT-rich Low_complexity Low_complexity 3 85 0 4 1216 231 173 0 0 chr3 82790432 82790484 -76809299 + (CA)n Simple_repeat Simple_repeat 1 52 0 4 1216 777 244 29 10 chr3 82790507 82790714 -76809069 + B3A SINE B2 1 211 -5 4 1216 204 67 0 0 chr3 82791187 82791217 -76808566 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 4 1216 396 0 0 0 chr3 82791363 82791407 -76808376 + (CA)n Simple_repeat Simple_repeat 1 44 0 4 1216 485 282 56 0 chr3 82792148 82792290 -76807493 + B4A SINE B4 1 150 -142 4 1216 415 189 18 9 chr3 82792362 82792474 -76807309 + (CATATA)n Simple_repeat Simple_repeat 6 118 0 4 1216 341 70 0 50 chr3 82792474 82792534 -76807249 + RLTR20B3 LTR ERVK 1 57 -520 4 1216 691 140 29 0 chr3 82793430 82793566 -76806217 + Lx9 LINE L1 7503 7642 -2 4 1216 1589 169 70 12 chr3 82794336 82794677 -76805106 + RLTR28B LTR ERVL 1 361 -120 4 1216 390 21 0 0 chr3 82794693 82794740 -76805043 + (CAGAGA)n Simple_repeat Simple_repeat 2 48 0 4 1216 342 280 21 0 chr3 82795205 82795298 -76804485 - RMER15 LTR ERVL -14 561 467 4 1216 250 200 20 0 chr3 82795444 82795494 -76804289 - RMER15 LTR ERVL -524 51 1 4 1216 198 0 0 0 chr3 82795580 82795602 -76804181 + (TG)n Simple_repeat Simple_repeat 1 22 0 4 1216 384 233 107 27 chr3 82796455 82796605 -76803178 + RSINE1 SINE B4 4 165 0 4 1216 213 280 0 0 chr3 82796607 82796725 -76803058 + (CA)n Simple_repeat Simple_repeat 1 118 0 4 1216 28 0 0 0 chr3 82796793 82796821 -76802962 + AT_rich Low_complexity Low_complexity 1 28 0 4 1216 198 0 0 0 chr3 82797352 82797374 -76802409 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 4 1216 384 232 34 30 chr3 82797495 82797609 -76802174 - MLT1A1 LTR MaLR -12 396 248 4 1216 297 0 0 0 chr3 82798589 82798622 -76801161 + (TG)n Simple_repeat Simple_repeat 1 33 0 4 1216 297 0 0 0 chr3 82798628 82798661 -76801122 + (CAGA)n Simple_repeat Simple_repeat 2 34 0 4 1216 354 123 0 88 chr3 82799697 82799777 -76800006 + Lx3C LINE L1 6898 6970 -6 4 1216 232 0 0 94 chr3 82799780 82799833 -76799950 + (TAGA)n Simple_repeat Simple_repeat 2 49 0 4 1216 245 292 133 29 chr3 82800216 82800389 -76799394 - MIR SINE MIR -49 213 23 4 1216 237 284 137 0 chr3 82800441 82800536 -76799247 - MIRb SINE MIR -84 184 77 4 1216 215 312 135 0 chr3 82800678 82800774 -76799009 - B1F1 SINE Alu -5 144 36 4 1216 486 0 0 0 chr3 82800880 82800934 -76798849 + (CA)n Simple_repeat Simple_repeat 2 55 0 4 1216 2070 130 0 7 chr3 82801730 82802040 -76797743 + RLTR10E LTR ERVK 1 308 -3 4 1216 780 306 59 24 chr3 82802396 82802771 -76797012 - LTR55 LTR ERV -112 436 49 4 1216 1236 168 18 5 chr3 82805261 82805483 -76794300 - URR1B DNA MER1_type 0 225 1 4 1216 306 0 0 0 chr3 82805701 82805735 -76794048 + (CA)n Simple_repeat Simple_repeat 2 35 0 4 1216 21 0 0 0 chr3 82805738 82805759 -76794024 + AT_rich Low_complexity Low_complexity 1 21 0 4 1216 491 256 41 0 chr3 82805767 82805888 -76793895 - RSINE1 SINE B4 -29 136 11 4 1216 185 0 40 0 chr3 82805996 82806021 -76793762 + (TTTTG)n Simple_repeat Simple_repeat 5 30 0 4 1216 581 290 0 25 chr3 82806576 82806735 -76793048 - RSINE1 SINE B4 -8 157 3 4 1216 192 40 0 0 chr3 82807403 82807428 -76792355 + (CA)n Simple_repeat Simple_repeat 1 25 0 4 1216 1109 81 13 7 chr3 82807688 82807837 -76791946 + B1_Mur4 SINE Alu 1 150 0 4 1216 222 116 0 0 chr3 82807840 82807883 -76791900 + (A)n Simple_repeat Simple_repeat 1 43 0 4 1216 402 74 0 0 chr3 82807995 82808049 -76791734 + (TG)n Simple_repeat Simple_repeat 2 55 0 4 1216 705 199 0 0 chr3 82808098 82808244 -76791539 + (TA)n Simple_repeat Simple_repeat 2 147 0 4 1216 181 119 48 0 chr3 82808559 82808601 -76791182 + T-rich Low_complexity Low_complexity 2 45 0 4 1216 1207 54 0 0 chr3 82808603 82808750 -76791033 - B1_Mus1 SINE Alu -1 147 1 4 1216 478 279 145 16 chr3 82809196 82809330 -76790453 + B3 SINE B2 5 149 -67 4 1216 459 0 0 0 chr3 82809330 82809381 -76790402 + (CA)n Simple_repeat Simple_repeat 1 51 0 4 1216 478 279 145 16 chr3 82809381 82809432 -76790351 + B3 SINE B2 150 213 -3 4 1216 202 188 0 0 chr3 82810010 82810042 -76789741 + (ATG)n Simple_repeat Simple_repeat 3 34 0 4 1216 241 26 26 26 chr3 82810468 82810507 -76789276 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 4 1216 630 0 0 0 chr3 82811959 82812029 -76787754 + (GA)n Simple_repeat Simple_repeat 1 70 0 4 1216 198 0 0 0 chr3 82814534 82814556 -76785227 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 4 1216 188 299 182 0 chr3 82814674 82814751 -76785032 - MIR SINE MIR -171 91 1 4 1216 387 0 0 0 chr3 82815055 82815098 -76784685 + (TG)n Simple_repeat Simple_repeat 2 44 0 4 1216 248 111 0 18 chr3 82817796 82817851 -76781932 + (GA)n Simple_repeat Simple_repeat 2 55 0 4 1216 25 95 0 0 chr3 82818677 82818751 -76781032 + AT_rich Low_complexity Low_complexity 1 74 0 4 1216 243 98 32 16 chr3 82819616 82819678 -76780105 + (TTTTG)n Simple_repeat Simple_repeat 3 65 0 4 1216 1107 83 14 0 chr3 82819695 82819840 -76779943 - B1_Mus1 SINE Alu -1 147 1 4 1216 1719 133 55 35 chr3 82819840 82820151 -76779632 - Lx5 LINE L1 -1147 5903 5587 4 1216 2926 236 83 152 chr3 82820152 82821349 -76778434 + Lx5 LINE L1 5936 7050 0 4 1216 473 252 0 53 chr3 82822187 82822300 -76777483 + PB1D10 SINE Alu 1 107 -10 4 1216 369 109 0 0 chr3 82822316 82822371 -76777412 + (GA)n Simple_repeat Simple_repeat 1 55 0 4 1216 251 202 103 35 chr3 82822461 82822548 -76777235 + B4A SINE B4 198 290 -2 4 1216 589 79 82 35 chr3 82822597 82822768 -76777015 + (CAGA)n Simple_repeat Simple_repeat 2 180 0 4 1216 204 189 0 36 chr3 82823323 82823378 -76776405 + (TTTG)n Simple_repeat Simple_repeat 3 55 0 4 1216 852 185 0 0 chr3 82823379 82823525 -76776258 - B1_Mus2 SINE Alu -1 146 1 5 1216 290 245 102 0 chr3 82823605 82823703 -76776080 + MER5C DNA MER1_type 206 313 0 5 1216 325 183 127 0 chr3 82824849 82824920 -76774863 - ID_B1 SINE B4 -22 202 123 5 1216 794 203 136 21 chr3 82825535 82825726 -76774057 - B3 SINE B2 0 216 4 5 1216 450 0 0 0 chr3 82825881 82825931 -76773852 + (CA)n Simple_repeat Simple_repeat 2 51 0 5 1216 322 258 0 126 chr3 82826035 82826146 -76773637 + PB1D10 SINE Alu 13 109 -8 5 1216 711 196 40 34 chr3 82826168 82826316 -76773467 + B1_Mur2 SINE Alu 1 149 0 5 1216 358 143 13 13 chr3 82827725 82827803 -76771980 + GA-rich Low_complexity Low_complexity 1 78 0 5 1216 443 293 58 0 chr3 82828637 82828811 -76770972 - MER53 DNA hAT -3 190 7 5 1216 444 265 112 0 chr3 82828965 82829225 -76770558 - L1MA7 LINE L1 -303 6009 5708 5 1216 759 174 179 6 chr3 82830468 82830647 -76769136 - URR1B DNA MER1_type -15 210 1 5 1216 360 0 0 0 chr3 82831265 82831305 -76768478 + (TGG)n Simple_repeat Simple_repeat 3 42 0 5 1216 225 246 76 15 chr3 82832216 82832282 -76767501 - MIRc SINE MIR -34 234 165 5 1216 258 32 0 0 chr3 82832615 82832646 -76767137 + (TC)n Simple_repeat Simple_repeat 2 32 0 5 1216 294 292 101 14 chr3 82836034 82836173 -76763610 + L2a LINE L2 3275 3425 -1 5 1216 270 148 0 0 chr3 82836484 82836538 -76763245 + (CAGG)n Simple_repeat Simple_repeat 2 55 0 5 1217 526 260 87 34 chr3 82837774 82837981 -76761802 - B4A SINE B4 -61 231 14 5 1217 21 0 0 0 chr3 82838247 82838268 -76761515 + AT_rich Low_complexity Low_complexity 1 21 0 5 1217 214 283 172 11 chr3 82839265 82839358 -76760425 + B1F2 SINE Alu 1 108 -41 5 1217 207 200 0 0 chr3 82839564 82839599 -76760184 + (TATATG)n Simple_repeat Simple_repeat 5 39 0 5 1217 392 285 59 7 chr3 82840047 82840199 -76759584 + RSINE1 SINE B4 4 163 -2 5 1217 209 93 23 0 chr3 82840202 82840223 -76759560 + (TTTG)n Simple_repeat Simple_repeat 1 21 0 5 1217 1511 48 21 0 chr3 82840223 82840409 -76759374 - B2_Mm1a SINE B2 -2 191 2 5 1217 209 93 23 0 chr3 82840409 82840430 -76759353 + (TTTG)n Simple_repeat Simple_repeat 3 24 0 5 1217 285 187 0 0 chr3 82840736 82840811 -76758972 + CT-rich Low_complexity Low_complexity 1 75 0 5 1217 192 77 0 0 chr3 82840916 82840942 -76758841 + (TA)n Simple_repeat Simple_repeat 1 26 0 5 1217 378 0 0 0 chr3 82841643 82841685 -76758098 + (TC)n Simple_repeat Simple_repeat 1 42 0 5 1217 366 80 0 0 chr3 82841685 82841734 -76758049 + (CA)n Simple_repeat Simple_repeat 1 50 0 5 1217 786 293 73 17 chr3 82841959 82842192 -76757591 + MTE2a LTR MaLR 57 302 -77 5 1217 207 0 0 0 chr3 82842403 82842426 -76757357 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 5 1217 468 254 29 22 chr3 82842426 82842563 -76757220 - B1_Mur2 SINE Alu -11 138 1 5 1217 793 72 54 0 chr3 82842671 82842782 -76757001 - B1_Mm SINE Alu -29 118 2 5 1217 380 293 66 18 chr3 82844331 82844498 -76755285 - L1M3 LINE L1 -488 5701 5527 5 1217 390 248 33 78 chr3 82845978 82846131 -76753652 + B3A SINE B2 53 198 0 5 1217 258 311 91 32 chr3 82851272 82851408 -76748375 + MIR SINE MIR 37 194 -74 5 1217 1078 81 138 0 chr3 82851441 82851601 -76748182 + B2_Mm1a SINE B2 4 185 -8 5 1217 549 183 150 0 chr3 82852863 82852983 -76746800 + B1_Mur2 SINE Alu 11 148 -1 5 1217 365 244 0 0 chr3 82852984 82853062 -76746721 + PB1D7 SINE Alu 43 120 0 5 1217 636 38 0 0 chr3 82854296 82854375 -76745408 + (GAAAA)n Simple_repeat Simple_repeat 5 83 0 5 1217 24 0 0 0 chr3 82854435 82854459 -76745324 + AT_rich Low_complexity Low_complexity 1 24 0 5 1217 297 0 0 0 chr3 82854925 82854958 -76744825 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 5 1217 354 98 0 5 chr3 82854958 82855023 -76744760 - B1_Mm SINE Alu -11 136 46 5 1217 265 273 108 15 chr3 82855669 82855799 -76743984 - MIRb SINE MIR -121 147 6 5 1217 1189 48 7 0 chr3 82856927 82857073 -76742710 + B1_Mus1 SINE Alu 2 148 0 5 1217 445 119 234 0 chr3 82857928 82858027 -76741756 - PB1D9 SINE Alu -22 126 4 5 1217 23 0 0 0 chr3 82858924 82858947 -76740836 + AT_rich Low_complexity Low_complexity 1 23 0 5 1217 1162 61 0 20 chr3 82858956 82859107 -76740676 + B1_Mus1 SINE Alu 1 148 0 5 1217 182 320 41 0 chr3 82859968 82860065 -76739718 + L2 LINE L2 2651 2751 -668 5 1217 1607 189 7 124 chr3 82861026 82861444 -76738339 + ORR1D1 LTR MaLR 1 369 -5 5 1217 252 0 0 0 chr3 82861532 82861560 -76738223 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 5 1217 1188 29 0 0 chr3 82861560 82861698 -76738085 - B1_Mus1 SINE Alu -10 138 1 5 1217 1174 61 0 7 chr3 82861967 82862116 -76737667 + B1_Mus1 SINE Alu 1 148 0 5 1217 30 0 0 0 chr3 82862118 82862148 -76737635 + AT_rich Low_complexity Low_complexity 1 30 0 5 1217 1205 48 0 0 chr3 82863968 82864115 -76735668 - B1_Mus2 SINE Alu 0 147 1 5 1217 264 289 45 71 chr3 82864155 82864267 -76735516 - RSINE1 SINE B4 0 165 57 5 1217 2337 79 28 0 chr3 82864278 82864596 -76735187 + ORR1A2 LTR MaLR 1 327 0 5 1217 605 218 80 148 chr3 82864630 82864867 -76734916 - B4 SINE B4 -64 228 8 5 1217 390 263 72 103 chr3 82865307 82865599 -76734184 + B4A SINE B4 1 283 -9 5 1217 192 77 0 0 chr3 82865812 82865838 -76733945 + (CACG)n Simple_repeat Simple_repeat 2 27 0 5 1217 482 221 266 6 chr3 82866074 82866247 -76733536 - ID_B1 SINE B4 -5 219 2 5 1217 694 316 133 23 chr3 82866438 82866956 -76732827 - Lx8 LINE L1 -6 7467 6893 5 1217 1437 266 17 0 chr3 82867032 82867381 -76732402 - Lx8 LINE L1 -754 6719 6365 5 1217 275 224 126 63 chr3 82867679 82867822 -76731961 - Lx LINE L1 0 6654 6503 5 1217 4513 128 3 22 chr3 82868567 82869287 -76730496 - L1_Mur1 LINE L1 -208 5678 4973 5 1217 2349 110 0 6 chr3 82869285 82869614 -76730169 - L1_Mur1 LINE L1 -244 5642 5316 5 1217 228 213 0 0 chr3 82870398 82870445 -76729338 - Lx7 LINE L1 -1924 5772 5726 5 1217 527 198 147 23 chr3 82871107 82871236 -76728547 - B1_Mur1 SINE Alu -2 147 3 5 1217 1128 107 6 6 chr3 82872452 82872631 -76727152 + URR1B DNA MER1_type 47 225 0 5 1217 297 51 0 0 chr3 82873511 82873550 -76726233 + (CA)n Simple_repeat Simple_repeat 2 40 0 5 1217 218 239 0 14 chr3 82874165 82874237 -76725546 + CT-rich Low_complexity Low_complexity 2 72 0 5 1217 186 133 0 0 chr3 82874943 82874973 -76724810 + (GGGA)n Simple_repeat Simple_repeat 4 33 0 5 1217 489 17 0 0 chr3 82874976 82875034 -76724749 + (TG)n Simple_repeat Simple_repeat 2 59 0 5 1217 24 0 0 0 chr3 82875366 82875390 -76724393 + AT_rich Low_complexity Low_complexity 1 24 0 5 1217 613 223 14 14 chr3 82875390 82875531 -76724252 - B1F SINE Alu -8 141 1 5 1217 1083 182 44 10 chr3 82876356 82876561 -76723222 - B3 SINE B2 -4 212 1 5 1217 495 237 8 26 chr3 82876682 82876799 -76722984 + B1_Mur4 SINE Alu 3 117 -33 5 1217 1240 143 156 18 chr3 82878131 82878412 -76721371 - MTC LTR MaLR -98 309 3 5 1217 708 104 171 31 chr3 82878699 82878828 -76720955 - B1_Mus1 SINE Alu -1 147 1 5 1217 273 314 81 0 chr3 82878921 82879045 -76720738 + MTEa LTR MaLR 1 134 -245 5 1217 685 301 111 28 chr3 82879024 82879386 -76720397 + MT2A LTR ERVL 130 521 -12 5 1217 256 153 69 0 chr3 82879495 82879567 -76720216 + GA-rich Low_complexity Low_complexity 2 78 0 5 1217 301 320 15 132 chr3 82879780 82879934 -76719849 - MER2 DNA MER2_type -141 204 67 5 1217 1131 89 0 0 chr3 82879934 82880080 -76719703 - B1_Mus2 SINE Alu 0 147 2 5 1217 301 320 15 132 chr3 82880080 82880130 -76719653 - MER2 DNA MER2_type -279 66 24 5 1217 2549 68 9 9 chr3 82880184 82880511 -76719272 + ORR1A2 LTR MaLR 1 327 0 5 1217 261 57 0 0 chr3 82880733 82880768 -76719015 + (AGGGGG)n Simple_repeat Simple_repeat 1 35 0 5 1217 267 54 0 0 chr3 82880924 82880961 -76718822 + (TG)n Simple_repeat Simple_repeat 2 38 0 5 1217 225 0 0 0 chr3 82881433 82881458 -76718325 + (CAAA)n Simple_repeat Simple_repeat 4 28 0 5 1217 24 0 0 0 chr3 82881503 82881527 -76718256 + AT_rich Low_complexity Low_complexity 1 24 0 5 1217 391 229 67 0 chr3 82882020 82882125 -76717658 - L1MB8 LINE L1 -7 6171 6060 5 1217 356 338 41 7 chr3 82882170 82882316 -76717467 - RSINE1 SINE B4 -11 154 4 5 1217 291 293 55 55 chr3 82882323 82882352 -76717431 - L1MB8 LINE L1 -124 6054 6026 5 1217 2045 179 15 39 chr3 82882352 82882816 -76716967 + RLTR11B LTR ERVK 1 453 0 5 1217 291 293 55 55 chr3 82882816 82882985 -76716798 - L1MB8 LINE L1 -153 6025 5857 5 1217 1071 271 67 76 chr3 82883563 82884130 -76715653 - MER45B DNA Tip100 -1 1039 478 5 1217 605 273 23 6 chr3 82884145 82884322 -76715461 - B3A SINE B2 -18 180 1 5 1217 322 255 128 105 chr3 82884657 82884788 -76714995 + L1MA9 LINE L1 6043 6174 -138 5 1217 767 203 142 6 chr3 82884788 82884971 -76714812 + B3 SINE B2 1 208 -8 5 1217 322 255 128 105 chr3 82884971 82885097 -76714686 + L1MA9 LINE L1 6175 6306 -6 5 1217 505 214 6 11 chr3 82885416 82885596 -76714187 + (TG)n Simple_repeat Simple_repeat 2 180 0 5 1217 462 236 200 0 chr3 82885596 82885742 -76714041 - ID_B1 SINE B4 -26 198 29 5 1217 985 291 35 19 chr3 82885817 82886129 -76713654 - MTEa LTR MaLR -3 376 60 5 1217 1693 113 62 65 chr3 82886185 82886507 -76713276 + ORR1A4 LTR MaLR 1 321 -8 5 1217 430 292 7 52 chr3 82887355 82887436 -76712347 - MTEa LTR MaLR -228 151 71 5 1217 249 57 0 0 chr3 82887436 82887471 -76712312 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 5 1217 430 292 7 52 chr3 82887471 82887544 -76712239 - MTEa LTR MaLR -309 70 4 5 1217 1502 65 5 0 chr3 82888437 82888623 -76711160 + B2_Mm1t SINE B2 1 187 -6 6 1217 2488 157 70 18 chr3 82889130 82889631 -76710152 + RLTR11A2 LTR ERVK 1 527 0 6 1217 207 0 0 0 chr3 82890093 82890116 -76709667 + (TG)n Simple_repeat Simple_repeat 2 24 0 6 1217 1939 143 9 0 chr3 82890299 82890627 -76709156 + RLTR30 LTR ERV1 1 331 -48 6 1217 180 0 0 0 chr3 82891302 82891322 -76708461 + (GGGA)n Simple_repeat Simple_repeat 3 22 0 6 1217 230 228 25 12 chr3 82891532 82891612 -76708171 + RLTR12B LTR ERVK 371 451 -77 6 1217 556 278 7 7 chr3 82892114 82892266 -76707517 - RSINE1 SINE B4 -10 155 4 6 1217 509 149 0 0 chr3 82892368 82892442 -76707341 + L1VL1 LINE L1 1 74 -6348 6 1217 32813 66 11 49 chr3 82892442 82897748 -76702035 + L1Md_F2 LINE L1 480 5586 -297 6 1217 7645 71 3 3 chr3 82897749 82898725 -76701058 + L1Md_F2 LINE L1 5588 6563 -19 6 1217 237 33 0 0 chr3 82899464 82899494 -76700289 + (CAAA)n Simple_repeat Simple_repeat 3 32 0 6 1217 450 0 0 0 chr3 82899499 82899549 -76700234 + (CCAA)n Simple_repeat Simple_repeat 2 51 0 6 1217 269 233 289 8 chr3 82901225 82901346 -76698437 + B3A SINE B2 9 163 -35 6 1217 356 296 204 33 chr3 82901553 82901882 -76697901 + MamRep1161 DNA TcMar 220 604 -353 6 1217 651 318 92 41 chr3 82903183 82903671 -76696112 - MER21B LTR ERV1 -61 802 290 6 1217 398 304 100 45 chr3 82903728 82903928 -76695855 - MER21B LTR ERV1 -652 211 1 6 1217 28 29 0 0 chr3 82904431 82904466 -76695317 + AT_rich Low_complexity Low_complexity 1 35 0 6 1217 527 300 125 0 chr3 82904841 82905041 -76694742 - L1MA5 LINE L1 -364 5936 5712 6 1217 23 0 0 0 chr3 82905181 82905204 -76694579 + AT_rich Low_complexity Low_complexity 1 23 0 6 1217 456 273 0 0 chr3 82905245 82905355 -76694428 + RSINE1 SINE B4 23 132 -33 6 1217 717 110 0 0 chr3 82905393 82905502 -76694281 + (GGA)n Simple_repeat Simple_repeat 3 111 0 6 1217 414 0 0 0 chr3 82906139 82906185 -76693598 + (CA)n Simple_repeat Simple_repeat 2 47 0 6 1217 1436 221 88 9 chr3 82906340 82906682 -76693101 + ORR1D2 LTR MaLR 2 370 0 6 1217 333 250 115 0 chr3 82907772 82907876 -76691907 - MTEb LTR MaLR -12 367 252 6 1217 978 9 0 0 chr3 82907895 82908006 -76691777 + (GGGAGA)n Simple_repeat Simple_repeat 5 115 0 6 1217 239 217 0 0 chr3 82908008 82908115 -76691668 + (CAGA)n Simple_repeat Simple_repeat 1 107 0 6 1217 264 261 0 4 chr3 82908136 82908376 -76691407 + GA-rich Low_complexity Low_complexity 1 238 0 6 1217 585 249 78 52 chr3 82908377 82908568 -76691215 - MTEb LTR MaLR -172 207 12 6 1217 2695 65 140 14 chr3 82909181 82909616 -76690167 - MURVY-LTR LTR ERV1 -29 490 1 6 1217 781 289 30 30 chr3 82909634 82909898 -76689885 + B4 SINE B4 27 290 -2 6 1217 186 191 0 0 chr3 82909903 82909945 -76689838 + (CA)n Simple_repeat Simple_repeat 2 43 0 6 1217 237 296 3 0 chr3 82909987 82910060 -76689723 + BC1_Mm scRNA scRNA 1 74 -9 6 1217 230 277 15 15 chr3 82909999 82910065 -76689718 + tRNA-Ala-GCY_ tRNA tRNA 8 73 -2 6 1217 203 161 0 0 chr3 82910065 82910096 -76689687 + (CA)n Simple_repeat Simple_repeat 2 32 0 6 1217 254 312 50 0 chr3 82912333 82912413 -76687370 + B1_Mur4 SINE Alu 1 84 -66 6 1217 322 310 26 17 chr3 82912413 82912528 -76687255 + Tigger5 DNA MER2_type 142 257 -2149 6 1217 460 284 71 14 chr3 82912502 82912713 -76687070 + Tigger5 DNA MER2_type 2146 2368 -38 6 1217 5312 180 64 14 chr3 82913169 82914222 -76685561 - Lx5 LINE L1 -103 6947 5843 6 1217 220 182 36 0 chr3 82914532 82914587 -76685196 + GA-rich Low_complexity Low_complexity 1 57 0 6 1217 405 39 0 0 chr3 82916698 82916749 -76683034 + (TC)n Simple_repeat Simple_repeat 1 51 0 6 1217 240 220 17 17 chr3 82917988 82918048 -76681735 + (TG)n Simple_repeat Simple_repeat 1 60 0 6 1217 324 241 6 28 chr3 82918053 82918232 -76681551 + (TATG)n Simple_repeat Simple_repeat 4 178 0 6 1217 536 323 48 4 chr3 82918936 82919166 -76680617 - MLT1D LTR MaLR -3 502 263 6 1217 369 0 0 0 chr3 82919497 82919538 -76680245 + (TC)n Simple_repeat Simple_repeat 1 41 0 6 1217 1187 72 0 22 chr3 82919791 82919975 -76679808 + (GAA)n Simple_repeat Simple_repeat 1 180 0 6 1217 317 62 0 20 chr3 82919985 82920034 -76679749 + (GGA)n Simple_repeat Simple_repeat 2 49 0 6 1217 416 270 8 17 chr3 82920644 82920761 -76679022 - ID_B1 SINE B4 -19 205 90 6 1217 1209 175 13 39 chr3 82920799 82921031 -76678752 + URR1A DNA MER1_type 1 226 0 6 1217 192 77 0 0 chr3 82921149 82921175 -76678608 + (A)n Simple_repeat Simple_repeat 1 26 0 6 1217 192 111 0 0 chr3 82921895 82921931 -76677852 + (TG)n Simple_repeat Simple_repeat 2 37 0 6 1217 233 203 15 15 chr3 82922333 82922398 -76677385 + L3b LINE CR1 7 71 -411 6 1217 309 288 194 0 chr3 82922695 82922865 -76676918 - Tigger5 DNA MER2_type -4 2402 2200 6 1217 232 308 211 0 chr3 82923026 82923130 -76676653 - Tigger5 DNA MER2_type -2271 135 10 6 1217 207 0 0 0 chr3 82923483 82923506 -76676277 + (TG)n Simple_repeat Simple_repeat 2 24 0 6 1217 350 240 0 51 chr3 82923521 82923600 -76676183 - B4A SINE B4 -2 290 216 6 1217 1190 303 38 23 chr3 82923666 82924142 -76675641 - Lx8 LINE L1 -38 7435 6953 6 1217 705 270 40 30 chr3 82924151 82924353 -76675430 - B4A SINE B4 -62 230 27 6 1217 213 167 43 43 chr3 82924495 82924633 -76675150 + (TCTA)n Simple_repeat Simple_repeat 1 138 0 6 1217 235 299 0 0 chr3 82924672 82924749 -76675034 - MLT2C2 LTR ERVL -57 503 427 6 1217 511 239 112 21 chr3 82925098 82925286 -76674497 - MLT2C2 LTR ERVL -181 283 79 6 1217 15415 76 23 0 chr3 82925286 82928029 -76671754 + L1VL4 LINE L1 223 3017 -542 6 1217 673 23 0 23 chr3 82928027 82928115 -76671668 - LSU-rRNA_Hsa rRNA rRNA -303 4732 4647 6 1217 441 0 0 0 chr3 82928181 82928230 -76671553 + (TTTA)n Simple_repeat Simple_repeat 3 51 0 6 1217 231 312 84 36 chr3 82928335 82928478 -76671305 + MIR SINE MIR 5 153 -109 6 1217 297 0 0 0 chr3 82929139 82929172 -76670611 + (TG)n Simple_repeat Simple_repeat 2 34 0 6 1217 25 0 0 0 chr3 82931926 82931951 -76667832 + GC_rich Low_complexity Low_complexity 1 25 0 6 1217 875 311 20 56 chr3 82934895 82935252 -76664531 + RCHARR1 DNA MER1_type 4 347 -627 6 1217 207 159 55 33 chr3 82935254 82935345 -76664438 + (TA)n Simple_repeat Simple_repeat 1 93 0 6 1217 2130 245 40 11 chr3 82935430 82935684 -76664099 + RCHARR1 DNA MER1_type 314 585 -389 6 1217 2472 81 16 0 chr3 82935684 82936006 -76663777 - ORR1A2 LTR MaLR 0 327 1 6 1217 2130 245 40 11 chr3 82936006 82936358 -76663425 + RCHARR1 DNA MER1_type 586 937 -37 6 1217 227 256 141 22 chr3 82937241 82937333 -76662450 + MTE2a LTR MaLR 256 358 -21 6 1217 3181 237 89 7 chr3 82937477 82938375 -76661408 - RCHARR1 DNA MER1_type -1 973 2 6 1217 1922 132 12 61 chr3 82938684 82939030 -76660753 + ORR1A4 LTR MaLR 1 329 0 6 1217 987 52 0 0 chr3 82939505 82939639 -76660144 + (TG)n Simple_repeat Simple_repeat 1 134 0 6 1217 435 87 0 0 chr3 82939639 82939708 -76660075 + (GA)n Simple_repeat Simple_repeat 2 70 0 6 1217 1049 211 13 9 chr3 82939921 82940146 -76659637 - URR1A DNA MER1_type 0 226 1 6 1217 423 0 0 0 chr3 82942160 82942207 -76657576 + (TG)n Simple_repeat Simple_repeat 1 47 0 6 1217 349 285 88 90 chr3 82942248 82942509 -76657274 - B4A SINE B4 -10 282 1 6 1217 441 0 0 0 chr3 82943341 82943390 -76656393 + (TG)n Simple_repeat Simple_repeat 2 50 0 6 1217 287 273 13 0 chr3 82943725 82943802 -76655981 + G-rich Low_complexity Low_complexity 4 81 0 6 1217 213 196 0 0 chr3 82944056 82944102 -76655681 + (TA)n Simple_repeat Simple_repeat 2 47 0 6 1217 516 16 0 0 chr3 82944103 82944164 -76655619 + (TCTA)n Simple_repeat Simple_repeat 4 64 0 6 1217 1064 299 86 4 chr3 82944485 82944949 -76654834 - L1MA6 LINE L1 -452 5848 5347 6 1217 565 285 31 5 chr3 82944958 82945180 -76654603 - L1MA6 LINE L1 -1351 4792 4565 6 1217 383 237 12 77 chr3 82945184 82945353 -76654430 - L1MA6 LINE L1 -1728 4415 4258 6 1217 372 133 0 0 chr3 82945448 82945508 -76654275 + (GGA)n Simple_repeat Simple_repeat 3 62 0 6 1217 412 229 46 28 chr3 82945622 82945730 -76654053 - B1F1 SINE Alu 0 149 40 6 1217 387 0 0 0 chr3 82945780 82945823 -76653960 + (TG)n Simple_repeat Simple_repeat 2 44 0 6 1217 462 291 22 22 chr3 82945840 82945977 -76653806 - RSINE1 SINE B4 -28 137 1 6 1217 1322 31 6 0 chr3 82947035 82947198 -76652585 + (TTC)n Simple_repeat Simple_repeat 2 165 0 6 1217 1242 35 0 0 chr3 82947201 82947344 -76652439 - B1_Mus1 SINE Alu -5 143 1 6 1217 311 354 66 25 chr3 82947752 82947949 -76651834 + MIRb SINE MIR 2 206 -62 6 1217 347 297 35 26 chr3 82950246 82950360 -76649423 + PB1D10 SINE Alu 3 117 0 6 1217 776 310 29 46 chr3 82950712 82951060 -76648723 + MLT1A LTR MaLR 33 374 0 6 1217 465 178 8 17 chr3 82951277 82951397 -76648386 + (CA)n Simple_repeat Simple_repeat 2 120 0 6 1217 191 256 183 0 chr3 82951583 82951665 -76648118 + L2a LINE L2 3324 3420 -6 6 1217 1086 294 60 82 chr3 82952386 82952879 -76646904 - L1MA6 LINE L1 -4 6296 5788 6 1217 1039 67 11 22 chr3 82952879 82953061 -76646722 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 6 1217 1086 294 60 82 chr3 82953061 82953472 -76646311 - L1MA6 LINE L1 -513 5787 5412 6 1217 852 104 0 0 chr3 82953634 82953759 -76646024 + (TTTC)n Simple_repeat Simple_repeat 2 126 0 6 1217 1081 79 14 0 chr3 82953761 82953900 -76645883 - B1_Mus2 SINE Alu -6 141 1 6 1217 533 239 77 97 chr3 82954446 82954641 -76645142 - B3A SINE B2 -7 191 1 6 1217 22 0 0 0 chr3 82954749 82954771 -76645012 + AT_rich Low_complexity Low_complexity 1 22 0 6 1217 2687 58 3 6 chr3 82954926 82955270 -76644513 + L1_Mus1 LINE L1 6225 6567 0 6 1217 2705 73 3 3 chr3 82955293 82955649 -76644134 + L1_Mus2 LINE L1 6211 6566 0 6 1217 347 241 11 11 chr3 82956458 82956546 -76643237 + B4A SINE B4 2 89 -203 6 1217 666 118 0 0 chr3 82956814 82956916 -76642867 + (CACG)n Simple_repeat Simple_repeat 1 102 0 6 1217 345 47 0 0 chr3 82957931 82957974 -76641809 + (TG)n Simple_repeat Simple_repeat 2 44 0 6 1217 205 217 22 0 chr3 82958260 82958306 -76641477 + (TATG)n Simple_repeat Simple_repeat 1 47 0 6 1217 1174 224 135 83 chr3 82958574 82958972 -76640811 + Lx9 LINE L1 7098 7518 -126 6 1217 459 0 0 0 chr3 82958972 82959023 -76640760 + (TG)n Simple_repeat Simple_repeat 2 52 0 6 1217 1174 224 135 83 chr3 82959023 82959144 -76640639 + Lx9 LINE L1 7519 7643 -1 6 1217 1042 73 0 27 chr3 82959977 82960161 -76639622 + (TG)n Simple_repeat Simple_repeat 1 179 0 7 1217 241 263 0 50 chr3 82961034 82961094 -76638689 - ID4_ SINE ID -4 79 23 7 1217 4948 82 12 75 chr3 82961129 82961930 -76637853 - RMER17A LTR ERVK 0 751 1 7 1217 663 233 38 22 chr3 82962313 82962497 -76637286 - B3A SINE B2 -3 195 9 7 1217 1221 29 19 14 chr3 82962553 82962763 -76637020 + (TCCA)n Simple_repeat Simple_repeat 1 210 0 7 1217 747 261 65 116 chr3 82963604 82963898 -76635885 + B4 SINE B4 3 281 -11 7 1217 302 359 105 23 chr3 82964224 82964529 -76635254 - L1MC LINE L1 -2033 5849 5520 7 1217 762 158 7 35 chr3 82965917 82966061 -76633722 + Lx6 LINE L1 7305 7444 -16 7 1217 339 25 0 0 chr3 82966591 82966631 -76633152 + (TG)n Simple_repeat Simple_repeat 1 40 0 7 1217 527 296 23 0 chr3 82966914 82967046 -76632737 - RSINE1 SINE B4 -2 163 29 7 1217 231 114 0 0 chr3 82967047 82967082 -76632701 + (TTTTC)n Simple_repeat Simple_repeat 3 37 0 7 1217 1230 55 0 0 chr3 82967082 82967228 -76632555 - B1_Mus2 SINE Alu 0 147 2 7 1217 440 292 67 24 chr3 82967742 82967907 -76631876 + LTR40c LTR ERVL 35 206 -259 7 1218 461 338 49 7 chr3 82968929 82969126 -76630657 + B3A SINE B2 1 202 -14 7 1218 8408 14 5 0 chr3 82969387 82970325 -76629458 - L1Md_A LINE L1 0 6582 5640 7 1218 3711 12 2 0 chr3 82970324 82970747 -76629036 + L1Md_A LINE L1 5076 5499 -384 7 1218 337 329 57 23 chr3 82972107 82972284 -76627499 - MIRb SINE MIR -12 256 74 7 1218 180 0 0 0 chr3 82972423 82972443 -76627340 + (A)n Simple_repeat Simple_repeat 1 20 0 7 1218 1193 48 0 0 chr3 82973232 82973377 -76626406 - B1_Mm SINE Alu -2 145 1 7 1218 10348 66 27 9 chr3 82973434 82974811 -76624972 - Lx3_Mus LINE L1 0 7009 5608 7 1218 6815 70 20 4 chr3 82974804 82975708 -76624075 + Lx3_Mus LINE L1 4705 5622 -264 7 1218 1635 222 72 26 chr3 82976066 82976483 -76623300 - Lx7 LINE L1 -52 7644 7209 7 1218 582 124 19 0 chr3 82977111 82977216 -76622567 - B1_Mm SINE Alu 0 147 41 7 1218 231 200 0 110 chr3 82977154 82977227 -76622556 - MT2B LTR ERVL -344 257 193 7 1218 254 286 13 0 chr3 82977394 82977471 -76622312 + MER5A DNA MER1_type 1 78 -111 7 1218 218 267 0 32 chr3 82977655 82977717 -76622066 + ID4 SINE ID 5 64 -19 7 1218 1805 169 98 9 chr3 82977792 82978139 -76621644 + ORR1C1 LTR MaLR 1 378 0 7 1218 311 255 374 0 chr3 82978415 82978562 -76621221 + ID_B1 SINE B4 2 203 -21 7 1218 576 106 0 0 chr3 82978572 82978657 -76621126 + (AGGGGG)n Simple_repeat Simple_repeat 4 88 0 7 1218 195 304 14 0 chr3 82979264 82979333 -76620450 + MIRb SINE MIR 133 202 -66 7 1218 21 36 0 0 chr3 82980036 82980064 -76619719 + AT_rich Low_complexity Low_complexity 1 28 0 7 1218 2607 274 63 22 chr3 82980073 82980925 -76618858 - Lx9 LINE L1 -24 7620 6734 7 1218 230 209 72 29 chr3 82980948 82981017 -76618766 - Lx9 LINE L1 -372 7272 7201 7 1218 1937 277 32 20 chr3 82980995 82981551 -76618232 - Lx8 LINE L1 -333 7140 6578 7 1218 730 221 32 5 chr3 82981551 82981738 -76618045 + RMER5 LTR ERV1 328 519 -15 7 1218 437 284 136 5 chr3 82982083 82982281 -76617502 - LTR16B1 LTR ERVL -126 354 131 7 1218 298 186 102 0 chr3 82983065 82983124 -76616659 - B4A SINE B4 -220 72 8 7 1218 505 0 0 30 chr3 82984701 82984768 -76615015 + (TTTTA)n Simple_repeat Simple_repeat 1 65 0 7 1218 1825 177 19 26 chr3 82985245 82985622 -76614161 - ORR1D1 LTR MaLR 0 374 1 7 1218 1943 304 101 58 chr3 82985639 82986271 -76613512 - ERVL-int LTR ERVL -1632 4125 3451 7 1218 1137 205 226 98 chr3 82986271 82986313 -76613470 - MT2A LTR ERVL -3 530 489 7 1218 510 31 0 0 chr3 82986313 82986377 -76613406 + (TCTA)n Simple_repeat Simple_repeat 3 66 0 7 1218 1137 205 226 98 chr3 82986377 82986804 -76612979 - MT2A LTR ERVL -45 488 3 7 1218 1943 304 101 58 chr3 82986804 82986893 -76612890 - ERVL-int LTR ERVL -2307 3450 3356 7 1218 272 253 110 0 chr3 82986893 82986984 -76612799 + PB1D7 SINE Alu 1 101 -19 7 1218 1943 304 101 58 chr3 82986984 82987279 -76612504 - ERVL-int LTR ERVL -2402 3355 3088 7 1218 1057 109 0 7 chr3 82987279 82987427 -76612356 - B1_Mus1 SINE Alu 0 148 2 7 1218 1943 304 101 58 chr3 82987427 82987612 -76612171 - ERVL-int LTR ERVL -2670 3087 2871 7 1218 189 306 73 9 chr3 82988667 82988776 -76611007 - L2b LINE L2 -211 3164 3049 7 1218 3331 3 0 0 chr3 82989885 82990250 -76609533 - L1Md_T LINE L1 0 6582 6218 7 1218 279 275 59 20 chr3 82991317 82991469 -76608314 + MIRb SINE MIR 23 180 -88 7 1218 509 250 89 24 chr3 82992253 82992421 -76607362 + B3A SINE B2 2 180 -18 7 1218 1184 241 96 12 chr3 82992704 82993049 -76606734 - MTE2b LTR MaLR -1 378 5 7 1218 971 59 37 0 chr3 82993112 82993247 -76606536 - B1_Mm SINE Alu 0 147 8 7 1218 701 0 24 0 chr3 82993440 82993524 -76606259 + (GAGAA)n Simple_repeat Simple_repeat 1 86 0 7 1218 289 67 0 104 chr3 82993668 82993735 -76606048 + (TTTA)n Simple_repeat Simple_repeat 3 62 0 7 1218 234 0 0 0 chr3 82993844 82993870 -76605913 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 7 1218 3739 260 155 45 chr3 82993895 82995144 -76604639 - Lx7 LINE L1 -403 7293 5923 7 1218 360 0 0 0 chr3 82995144 82995184 -76604599 + (CA)n Simple_repeat Simple_repeat 2 41 0 7 1218 3739 206 114 37 chr3 82995184 82995857 -76603926 - Lx7 LINE L1 -1774 5922 5182 7 1218 492 48 0 0 chr3 82997387 82997450 -76602333 + (TG)n Simple_repeat Simple_repeat 2 64 0 7 1218 21 0 0 0 chr3 82997640 82997661 -76602122 + AT_rich Low_complexity Low_complexity 1 21 0 7 1218 620 186 162 12 chr3 82997661 82997815 -76601968 - B3 SINE B2 -23 172 1 7 1218 283 172 34 17 chr3 82998035 82998094 -76601689 + MER106A DNA MER1_type 96 155 -81 7 1218 302 282 167 32 chr3 82998966 82999212 -76600571 + Charlie4a DNA MER1_type 35 313 -195 7 1218 241 265 36 0 chr3 82999915 82999998 -76599785 - B3 SINE B2 -8 208 123 7 1218 311 290 40 0 chr3 83000007 83000107 -76599676 - B3A SINE B2 -89 109 6 1 1218 4531 175 60 0 chr3 83000642 83000873 -76598910 + L1_Mus3 LINE L1 4995 5227 -650 2 1218 440 97 43 0 chr3 83000873 83000966 -76598817 + (TA)n Simple_repeat Simple_repeat 2 98 0 3 1218 7909 105 23 1 chr3 83000966 83002310 -76597473 + L1_Mus3 LINE L1 5228 6638 0 2 1218 290 67 22 0 chr3 83002610 83002655 -76597128 + (TG)n Simple_repeat Simple_repeat 2 47 0 4 1218 486 244 17 0 chr3 83002673 83002845 -76596938 + (TG)n Simple_repeat Simple_repeat 1 175 0 4 1218 449 241 11 17 chr3 83002801 83002978 -76596805 + (TATATG)n Simple_repeat Simple_repeat 1 176 0 5 1218 366 0 56 0 chr3 83004024 83004078 -76595705 + (TG)n Simple_repeat Simple_repeat 1 57 0 6 1218 380 347 71 32 chr3 83004079 83004389 -76595394 + L1M5 LINE L1 4625 4946 -1200 7 1218 345 302 52 28 chr3 83005100 83005282 -76594501 - MIRb SINE MIR -29 239 51 8 1218 246 336 41 35 chr3 83005371 83005516 -76594267 - MLT1N2 LTR MaLR -27 535 390 9 1218 370 187 11 11 chr3 83005859 83005951 -76593832 + CT-rich Low_complexity Low_complexity 1 92 0 1 1218 359 292 21 0 chr3 83006749 83006845 -76592938 + CT-rich Low_complexity Low_complexity 3 100 0 1 1218 633 255 0 14 chr3 83006846 83006993 -76592790 - B1F1 SINE Alu -4 145 1 1 1218 2260 154 32 5 chr3 83007977 83008381 -76591402 - MTC LTR MaLR 0 421 7 1 1218 458 200 69 35 chr3 83009991 83010136 -76589647 - Lx9 LINE L1 -6 7638 7489 1 1218 406 237 19 12 chr3 83010136 83010259 -76589524 + MLT2B2 LTR ERVL 437 565 -2 1 1218 242 336 23 0 chr3 83010844 83010975 -76588808 + MER20B DNA MER1_type 154 287 -496 1 1218 459 304 7 40 chr3 83011052 83011313 -76588470 + B4A SINE B4 6 292 0 1 1218 303 239 91 0 chr3 83011682 83011770 -76588013 + MER20B DNA MER1_type 557 652 -131 1 1218 485 252 82 0 chr3 83012258 83012393 -76587390 - B1F SINE Alu -3 146 1 1 1218 510 17 0 0 chr3 83013016 83013075 -76586708 + (CA)n Simple_repeat Simple_repeat 2 60 0 1 1218 447 19 0 0 chr3 83013075 83013126 -76586657 + (GA)n Simple_repeat Simple_repeat 2 53 0 2 1218 24 67 0 0 chr3 83014895 83014940 -76584843 + AT_rich Low_complexity Low_complexity 1 45 0 2 1218 431 257 10 19 chr3 83015026 83015129 -76584654 - PB1D7 SINE Alu -2 118 17 2 1218 351 0 0 0 chr3 83016865 83016904 -76582879 + (TG)n Simple_repeat Simple_repeat 1 39 0 2 1218 234 311 84 70 chr3 83017261 83017403 -76582380 - LTR33 LTR ERVL -350 165 22 2 1218 625 308 62 13 chr3 83017551 83017775 -76582008 + B4A SINE B4 27 261 -31 2 1218 525 58 0 0 chr3 83017891 83017960 -76581823 + (CA)n Simple_repeat Simple_repeat 2 70 0 2 1218 459 0 0 0 chr3 83018711 83018762 -76581021 + (TG)n Simple_repeat Simple_repeat 1 51 0 2 1218 238 313 142 28 chr3 83018862 83019422 -76580361 + L1M4 LINE L1 2221 2850 -3290 2 1218 818 216 49 49 chr3 83019644 83019848 -76579935 - Lx4B LINE L1 -38 7020 6817 2 1218 1201 55 0 0 chr3 83020238 83020384 -76579399 + B1_Mm SINE Alu 2 147 0 3 1218 216 0 0 0 chr3 83020384 83020408 -76579375 + (A)n Simple_repeat Simple_repeat 1 24 0 3 1218 323 368 26 18 chr3 83022293 83022520 -76577263 + L1MEc LINE L1 46 274 -6126 3 1218 277 287 104 0 chr3 83022918 83023033 -76576750 + L1MEc LINE L1 878 1004 -5411 3 1218 240 35 0 0 chr3 83023229 83023258 -76576525 + (CAGA)n Simple_repeat Simple_repeat 2 30 0 3 1218 21 57 0 0 chr3 83023519 83023554 -76576229 + AT_rich Low_complexity Low_complexity 1 35 0 3 1218 393 304 180 7 chr3 83023654 83023949 -76575834 + L1MEc LINE L1 3284 3629 -2690 3 1218 247 292 117 68 chr3 83024226 83024432 -76575351 - ORR1E LTR MaLR -143 216 1 3 1218 214 270 0 113 chr3 83024658 83024729 -76575054 + B4A SINE B4 8 70 -222 3 1218 24 0 0 0 chr3 83026653 83026677 -76573106 + AT_rich Low_complexity Low_complexity 1 24 0 3 1218 804 171 13 20 chr3 83028026 83028175 -76571608 - B1_Mur3 SINE Alu 0 149 2 3 1218 1294 196 117 45 chr3 83031440 83031798 -76567985 + ORR1C2 LTR MaLR 1 384 0 3 1218 506 184 92 0 chr3 83031934 83032043 -76567740 + B1_Mur2 SINE Alu 31 149 0 4 1218 263 167 33 0 chr3 83032071 83032131 -76567652 + GA-rich Low_complexity Low_complexity 3 64 0 4 1218 360 0 0 0 chr3 83033101 83033141 -76566642 + (TG)n Simple_repeat Simple_repeat 1 40 0 4 1218 1557 49 16 0 chr3 83033538 83033723 -76566060 + B2_Mm2 SINE B2 1 188 -7 4 1218 266 267 33 0 chr3 83033928 83033988 -76565795 + ID4_ SINE ID 7 68 -15 4 1218 1022 209 52 66 chr3 83034298 83034585 -76565198 - B4A SINE B4 0 292 10 4 1218 432 212 0 0 chr3 83034667 83034752 -76565031 - L1_Mur2 LINE L1 -2530 3347 3263 4 1218 180 77 0 0 chr3 83034754 83034780 -76565003 + (TGG)n Simple_repeat Simple_repeat 1 26 0 4 1218 339 89 0 0 chr3 83034781 83034826 -76564957 - Lx LINE L1 -571 6083 6039 4 1218 5824 77 8 9 chr3 83034835 83035375 -76564408 - L1_Mus4 LINE L1 -6 6630 6087 4 1218 183 42 0 0 chr3 83035375 83035399 -76564384 + (GGGGA)n Simple_repeat Simple_repeat 1 24 0 5 1218 204 40 0 0 chr3 83035404 83035429 -76564354 + (TGG)n Simple_repeat Simple_repeat 2 26 0 5 1218 5824 77 8 9 chr3 83035429 83035652 -76564131 - L1_Mus4 LINE L1 -552 6084 5863 4 1218 3314 116 11 0 chr3 83035723 83036196 -76563587 + L1_Mm LINE L1 5387 5864 -19 5 1218 201 250 0 0 chr3 83036729 83036769 -76563014 + (TG)n Simple_repeat Simple_repeat 1 40 0 5 1218 428 236 88 141 chr3 83037587 83037779 -76562004 + B3A SINE B2 4 185 -13 5 1218 21 0 0 0 chr3 83037793 83037814 -76561969 + AT_rich Low_complexity Low_complexity 1 21 0 5 1218 324 0 0 0 chr3 83038016 83038052 -76561731 + (TG)n Simple_repeat Simple_repeat 1 36 0 5 1218 326 253 10 40 chr3 83038100 83038199 -76561584 - RSINE1 SINE B4 -68 97 2 5 1218 252 0 0 0 chr3 83039392 83039420 -76560363 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 5 1218 230 211 0 0 chr3 83041016 83041054 -76558729 + polypurine Low_complexity Low_complexity 4 41 0 5 1218 774 157 30 0 chr3 83041054 83041220 -76558563 + GA-rich Low_complexity Low_complexity 1 171 0 6 1218 429 279 90 32 chr3 83041647 83041836 -76557947 + MER44D DNA MER2_type 1 200 -505 6 1218 245 322 184 0 chr3 83041848 83042000 -76557783 + MER44D DNA MER2_type 523 702 -3 6 1218 261 0 0 0 chr3 83042344 83042373 -76557410 + (TTTG)n Simple_repeat Simple_repeat 4 32 0 6 1218 237 299 29 22 chr3 83043345 83043482 -76556301 - L1MC5 LINE L1 -516 7445 7308 6 1218 236 284 0 15 chr3 83045446 83045514 -76554269 + (CATATA)n Simple_repeat Simple_repeat 5 71 0 6 1218 569 149 9 0 chr3 83046668 83046782 -76553001 + (TATG)n Simple_repeat Simple_repeat 4 118 0 6 1218 3586 125 118 18 chr3 83046782 83047400 -76552383 + Lx2 LINE L1 6318 6997 0 6 1218 237 243 57 0 chr3 83047788 83047858 -76551925 - ORR1E LTR MaLR -268 91 18 6 1218 222 204 37 0 chr3 83049951 83050005 -76549778 + T-rich Low_complexity Low_complexity 4 59 0 6 1218 2341 309 55 38 chr3 83050996 83052033 -76547750 - Lx8 LINE L1 -6 7467 6413 6 1218 869 336 55 13 chr3 83054599 83055129 -76544654 - L1MA7 LINE L1 -103 6188 5625 7 1218 495 87 0 0 chr3 83056341 83056410 -76543373 + (TG)n Simple_repeat Simple_repeat 1 69 0 7 1218 241 292 10 73 chr3 83056515 83056611 -76543172 - 4.5SRNA scRNA scRNA -4 90 1 7 1218 369 222 24 24 chr3 83056785 83056868 -76542915 + B4A SINE B4 187 269 -23 7 1218 405 0 0 0 chr3 83056870 83056915 -76542868 + (CA)n Simple_repeat Simple_repeat 2 46 0 7 1218 291 229 85 48 chr3 83057709 83057742 -76542041 + Lx5 LINE L1 5232 5271 -875 7 1218 3471 212 24 5 chr3 83057742 83058368 -76541415 - Lx5 LINE L1 0 7050 6413 7 1218 4415 134 12 10 chr3 83058368 83059310 -76540473 + Lx5 LINE L1 5237 6192 -858 7 1218 9168 3 0 0 chr3 83059548 83060781 -76539002 - L1Md_A LINE L1 0 6582 5350 7 1218 813 268 40 106 chr3 83061475 83061880 -76537903 - MTE2a LTR MaLR -1 378 1 7 1218 933 253 49 29 chr3 83062217 83062461 -76537322 + B4A SINE B4 22 270 -22 7 1218 309 304 14 0 chr3 83062900 83062969 -76536814 - ID4_ SINE ID -9 74 5 8 1218 316 383 88 26 chr3 83063415 83063608 -76536175 + LTR78 LTR ERV1 314 518 -786 8 1218 258 316 54 48 chr3 83063828 83063994 -76535789 + ORR1E LTR MaLR 25 191 -168 8 1218 3536 57 2 2 chr3 83064595 83065000 -76534783 - MTB_Mm LTR MaLR 0 407 3 8 1218 358 254 101 58 chr3 83065040 83065178 -76534605 + LTR78 LTR ERV1 1142 1285 -19 8 1218 261 182 0 0 chr3 83065514 83065569 -76534214 + (TG)n Simple_repeat Simple_repeat 2 56 0 8 1218 381 288 87 78 chr3 83065592 83065822 -76533961 - B4A SINE B4 -2 290 59 8 1218 325 286 78 26 chr3 83066013 83066128 -76533655 - L1MEd LINE L1 -5416 703 583 8 1218 419 65 63 21 chr3 83066153 83066248 -76533535 + (TCTG)n Simple_repeat Simple_repeat 2 100 0 8 1218 291 54 0 0 chr3 83066248 83066285 -76533498 + (CA)n Simple_repeat Simple_repeat 1 37 0 8 1218 1465 105 5 0 chr3 83067350 83067540 -76532243 - B2_Mm1t SINE B2 -1 192 2 9 1218 398 94 0 15 chr3 83067557 83067622 -76532161 + (TG)n Simple_repeat Simple_repeat 1 64 0 9 1218 378 244 13 13 chr3 83067626 83067705 -76532078 - B3A SINE B2 -38 160 82 9 1218 1182 69 14 0 chr3 83067910 83068055 -76531728 + B1_Mm SINE Alu 1 147 0 9 1218 435 19 0 0 chr3 83068632 83068684 -76531099 + (CA)n Simple_repeat Simple_repeat 2 53 0 9 1218 21 57 0 0 chr3 83068776 83068811 -76530972 + AT_rich Low_complexity Low_complexity 1 35 0 9 1218 269 340 42 65 chr3 83070062 83070276 -76529507 - MIRb SINE MIR -32 236 28 9 1218 184 308 45 91 chr3 83070225 83070357 -76529426 + MIRb SINE MIR 24 149 -119 9 1218 305 106 0 0 chr3 83070899 83070946 -76528837 - URR1B DNA MER1_type -87 138 92 9 1218 407 244 109 0 chr3 83071008 83071127 -76528656 + MTE2b LTR MaLR 169 300 -79 9 1218 376 333 31 67 chr3 83071209 83071402 -76528381 + MLT1B LTR MaLR 205 390 0 1 1218 375 285 72 35 chr3 83071490 83071709 -76528074 - ORR1E LTR MaLR -110 249 30 1 1218 342 0 0 0 chr3 83071933 83071971 -76527812 + (TTCA)n Simple_repeat Simple_repeat 1 38 0 1 1218 810 276 67 102 chr3 83072037 83072409 -76527374 - MTE2a LTR MaLR -20 359 1 1 1218 378 264 84 9 chr3 83072692 83072799 -76526984 - MLT2B4 LTR ERVL -1 562 448 1 1218 619 279 65 0 chr3 83072795 83072996 -76526787 - MLT2B4 LTR ERVL -342 214 1 1 1218 23 54 0 0 chr3 83073558 83073595 -76526188 + AT_rich Low_complexity Low_complexity 1 37 0 1 1218 450 36 0 0 chr3 83075959 83076015 -76523768 + (TG)n Simple_repeat Simple_repeat 1 56 0 1 1218 365 266 34 34 chr3 83077358 83077475 -76522308 - PB1D9 SINE Alu -2 118 2 1 1218 349 339 82 45 chr3 83080066 83080418 -76519365 + L1MC LINE L1 4403 4767 -1379 1 1218 456 344 143 7 chr3 83080474 83080887 -76518896 + L1M5 LINE L1 4885 5353 -793 1 1218 309 26 0 0 chr3 83081485 83081523 -76518260 + (CA)n Simple_repeat Simple_repeat 2 39 0 1 1218 255 288 10 19 chr3 83081536 83081747 -76518036 + (CA)n Simple_repeat Simple_repeat 1 208 0 1 1218 485 30 30 0 chr3 83081754 83081820 -76517963 + (CAGAGA)n Simple_repeat Simple_repeat 3 70 0 1 1218 204 40 0 0 chr3 83081824 83081849 -76517934 + (GGGGA)n Simple_repeat Simple_repeat 4 28 0 1 1218 307 253 40 50 chr3 83082132 83082232 -76517551 - RSINE1 SINE B4 -65 100 2 1 1218 525 304 42 71 chr3 83082771 83083054 -76516729 + L1MC5 LINE L1 6636 6910 -1051 1 1218 723 252 7 7 chr3 83083120 83083272 -76516511 + B3A SINE B2 1 152 -46 1 1218 264 30 0 0 chr3 83083275 83083308 -76516475 + (CA)n Simple_repeat Simple_repeat 2 34 0 1 1218 235 288 71 98 chr3 83083308 83083562 -76516221 + L1MC5 LINE L1 7093 7339 -622 1 1218 546 331 0 0 chr3 83086254 83086396 -76513387 - ID_B1 SINE B4 -5 219 78 1 1218 848 291 112 13 chr3 83086399 83086775 -76513008 - L1MB1 LINE L1 -13 6155 5743 1 1218 263 273 13 0 chr3 83086795 83086872 -76512911 - L1MB1 LINE L1 -494 5674 5597 1 1218 227 219 24 0 chr3 83087061 83087102 -76512681 - RMER15 LTR ERVL 0 575 534 1 1218 625 171 6 6 chr3 83087110 83087260 -76512523 + (CA)n Simple_repeat Simple_repeat 2 151 0 1 1218 471 48 0 0 chr3 83087260 83087322 -76512461 + (GA)n Simple_repeat Simple_repeat 2 63 0 1 1218 625 171 6 6 chr3 83087322 83087330 -76512453 + (CA)n Simple_repeat Simple_repeat 2 9 0 1 1218 184 323 52 31 chr3 83088318 83088414 -76511369 - L2 LINE L2 -3146 273 176 1 1218 364 308 57 41 chr3 83090212 83090334 -76509449 + MIR SINE MIR 38 161 -101 1 1218 970 134 6 11 chr3 83091394 83091568 -76508215 + CT-rich Low_complexity Low_complexity 4 176 0 1 1218 206 62 0 30 chr3 83091568 83091601 -76508182 + (TCCC)n Simple_repeat Simple_repeat 4 35 0 1 1218 25 51 0 0 chr3 83091820 83091859 -76507924 + AT_rich Low_complexity Low_complexity 1 39 0 1 1218 252 0 0 0 chr3 83091951 83091979 -76507804 + (TG)n Simple_repeat Simple_repeat 2 29 0 1 1218 224 260 0 0 chr3 83092001 83092051 -76507732 + T-rich Low_complexity Low_complexity 1 50 0 1 1218 311 179 45 0 chr3 83093010 83093077 -76506706 - ID SINE ID -153 71 2 1 1218 207 0 0 0 chr3 83094660 83094683 -76505100 + (GA)n Simple_repeat Simple_repeat 1 23 0 1 1218 663 245 141 16 chr3 83094895 83095086 -76504697 - B3 SINE B2 0 216 2 1 1218 288 0 0 0 chr3 83095160 83095192 -76504591 + (A)n Simple_repeat Simple_repeat 1 32 0 1 1218 263 320 0 13 chr3 83095215 83095291 -76504492 - LTR50 LTR ERVL -715 80 6 1 1218 477 0 0 0 chr3 83095559 83095612 -76504171 + (CATAT)n Simple_repeat Simple_repeat 1 53 0 1 1218 192 179 0 0 chr3 83096006 83096045 -76503738 + GA-rich Low_complexity Low_complexity 2 40 0 1 1218 293 303 0 0 chr3 83096247 83096323 -76503460 + ID4_ SINE ID 7 82 -1 1 152 38845 13 0 7 chr3 83096714 83102130 -76497653 + L1Md_A LINE L1 214 5586 -297 1 1219 9460 12 0 0 chr3 83102130 83103126 -76496657 + L1Md_A LINE L1 5587 6582 0 1 1219 625 253 109 6 chr3 83104564 83104739 -76495044 - B3 SINE B2 -19 197 5 1 1219 254 256 58 0 chr3 83105627 83105713 -76494070 - Charlie2b DNA MER1_type -574 2208 2118 1 1219 597 28 0 0 chr3 83105715 83105786 -76493997 + (TTCC)n Simple_repeat Simple_repeat 2 72 0 1 1219 278 333 48 0 chr3 83105791 83105875 -76493908 - PB1 SINE Alu -16 111 24 1 1219 1760 226 34 15 chr3 83105950 83106359 -76493424 - MTD LTR MaLR -2 417 1 1 1219 333 264 77 0 chr3 83107951 83108042 -76491741 - B3 SINE B2 -34 182 85 1 1219 21 0 0 0 chr3 83109850 83109871 -76489912 + AT_rich Low_complexity Low_complexity 1 21 0 1 1219 194 91 30 0 chr3 83110916 83110949 -76488834 + (CA)n Simple_repeat Simple_repeat 2 35 0 1 1219 372 43 0 0 chr3 83110951 83110997 -76488786 + (TA)n Simple_repeat Simple_repeat 2 47 0 1 1219 2216 133 124 12 chr3 83111331 83111758 -76488025 - IAPLTR2_Mm LTR ERVK 0 475 1 1 1219 234 91 0 0 chr3 83112410 83112443 -76487340 + (T)n Simple_repeat Simple_repeat 1 33 0 1 1219 27 0 0 0 chr3 83112819 83112846 -76486937 + AT_rich Low_complexity Low_complexity 1 27 0 1 1219 243 300 43 0 chr3 83113008 83113078 -76486705 + MIRb SINE MIR 121 193 -75 1 1219 761 264 111 47 chr3 83113684 83113982 -76485801 - Lx8 LINE L1 -18 7455 7139 1 1219 878 260 33 9 chr3 83113987 83114197 -76485586 - B3 SINE B2 0 216 2 1 1219 741 98 73 16 chr3 83114402 83114526 -76485257 - B1_Mur4 SINE Alu -14 136 6 1 1219 329 182 47 134 chr3 83114423 83114550 -76485233 - MT2B LTR ERVL -337 264 149 1 1219 886 259 92 33 chr3 83114890 83115377 -76484406 - L1M4c LINE L1 -2561 3815 3300 1 1219 573 268 282 20 chr3 83115732 83116136 -76483647 - L1M4c LINE L1 -3102 3274 2765 1 1219 234 62 0 0 chr3 83116139 83116171 -76483612 + (TA)n Simple_repeat Simple_repeat 2 33 0 1 1219 412 317 31 31 chr3 83116179 83116371 -76483412 - L1M4c LINE L1 -4569 1815 1624 1 1219 311 279 48 9 chr3 83116677 83116782 -76483001 + L1M3c LINE L1 915 1023 -5118 1 1219 414 343 92 38 chr3 83116845 83117529 -76482254 + L1M4c LINE L1 1002 1650 -4734 1 1219 240 111 0 0 chr3 83118266 83118302 -76481481 + (TATG)n Simple_repeat Simple_repeat 2 37 0 1 1219 220 165 82 0 chr3 83118311 83118408 -76481375 + (TA)n Simple_repeat Simple_repeat 1 105 0 1 1219 533 15 15 0 chr3 83118478 83118544 -76481239 + (TCTA)n Simple_repeat Simple_repeat 2 68 0 1 1219 297 267 103 8 chr3 83118838 83118955 -76480828 + ID_B1 SINE B4 91 218 -6 1 1219 33 25 0 0 chr3 83119249 83119289 -76480494 + AT_rich Low_complexity Low_complexity 1 40 0 1 1219 2364 79 3 3 chr3 83119505 83119810 -76479973 - L1_Mus1 LINE L1 -1 6566 6262 1 1219 865 328 88 9 chr3 83120607 83121038 -76478745 + Lx8 LINE L1 6967 7431 -42 1 1219 223 93 23 23 chr3 83121047 83121091 -76478692 + (TA)n Simple_repeat Simple_repeat 1 44 0 1 1219 393 22 0 0 chr3 83121381 83121427 -76478356 + (CA)n Simple_repeat Simple_repeat 2 47 0 1 1219 688 200 0 44 chr3 83122172 83122308 -76477475 + B1_Mur2 SINE Alu 20 149 0 1 1219 232 298 128 20 chr3 83122941 83123136 -76476647 - L1MEe LINE L1 -4135 719 504 1 1219 4244 32 6 4 chr3 83123258 83123732 -76476051 - L1_Mus1 LINE L1 -1 6566 6092 1 1219 377 266 44 1 chr3 83123873 83123972 -76475811 - PB1D10 SINE Alu 0 117 16 1 1219 1112 40 17 17 chr3 83125047 83125277 -76474506 + (TCTA)n Simple_repeat Simple_repeat 1 230 0 1 1219 513 0 0 0 chr3 83126312 83126369 -76473414 + (CA)n Simple_repeat Simple_repeat 2 58 0 1 1219 495 303 26 36 chr3 83127037 83127229 -76472554 + B3A SINE B2 1 190 -8 1 1219 3016 85 20 3 chr3 83127264 83127654 -76472129 - L1_Mus1 LINE L1 0 6567 6171 1 1219 692 176 12 12 chr3 83127738 83127910 -76471873 + CT-rich Low_complexity Low_complexity 2 173 0 1 1219 572 0 15 0 chr3 83128270 83128338 -76471445 + (GA)n Simple_repeat Simple_repeat 2 70 0 1 1219 256 283 99 62 chr3 83128594 83128756 -76471027 + B4A SINE B4 7 174 -118 1 1219 525 324 150 12 chr3 83130289 83130542 -76469241 + B4A SINE B4 3 290 -2 1 1219 299 191 73 0 chr3 83130866 83130934 -76468849 + URR1B DNA MER1_type 153 225 0 1 1219 7359 60 15 0 chr3 83132347 83133274 -76466509 - L1_Mm LINE L1 -970 4913 3973 1 1219 25 31 0 0 chr3 83133662 83133694 -76466089 + AT_rich Low_complexity Low_complexity 1 32 0 1 1219 180 217 0 0 chr3 83134278 83134324 -76465459 + (TG)n Simple_repeat Simple_repeat 2 47 0 1 1219 443 238 7 0 chr3 83134341 83134492 -76465291 + (TG)n Simple_repeat Simple_repeat 1 152 0 1 1219 317 302 102 38 chr3 83134517 83134703 -76465080 - HAL1 LINE L1 -925 1582 1385 1 1219 10071 17 0 0 chr3 83134772 83135902 -76463881 + L1Md_T LINE L1 4457 5586 -297 1 1219 9012 35 0 0 chr3 83135902 83136898 -76462885 + L1Md_T LINE L1 5587 6582 0 1 1219 536 264 8 16 chr3 83136905 83137032 -76462751 - RSINE1 SINE B4 -38 127 2 1 1219 620 48 0 12 chr3 83137316 83137401 -76462382 + (TA)n Simple_repeat Simple_repeat 2 85 0 1 1219 2588 184 63 6 chr3 83138327 83138820 -76460963 - RLTR28 LTR ERVL 0 524 4 1 1219 246 62 0 0 chr3 83139369 83139401 -76460382 + (TG)n Simple_repeat Simple_repeat 2 33 0 1 1219 3736 20 0 0 chr3 83139401 83139794 -76459989 - MTA_Mm LTR MaLR -3 393 1 1 1219 6006 17 1 1 chr3 83139794 83140516 -76459267 - MTA_Mm-int LTR MaLR 0 1098 377 1 1219 42130 5 0 0 chr3 83140523 83147083 -76452700 - L1Md_A LINE L1 0 6582 23 1 1219 3200 23 3 0 chr3 83147083 83147472 -76452311 - MTA_Mm-int LTR MaLR -708 390 1 1 1219 3767 20 0 0 chr3 83147472 83147868 -76451915 - MTA_Mm LTR MaLR 0 396 1 1 1219 1008 68 0 0 chr3 83147868 83148001 -76451782 + (TG)n Simple_repeat Simple_repeat 1 133 0 1 1219 1667 230 56 23 chr3 83148001 83148429 -76451354 - RMER4B LTR ERVK -143 442 1 1 1219 275 325 12 12 chr3 83148528 83148612 -76451171 + MIRb SINE MIR 25 108 -160 1 1219 462 308 15 44 chr3 83148962 83149126 -76450657 - B3A SINE B2 -60 156 2 1 1219 216 0 0 0 chr3 83152223 83152247 -76447536 + (CAAA)n Simple_repeat Simple_repeat 4 27 0 1 1219 461 288 130 0 chr3 83152282 83152428 -76447355 + B3 SINE B2 47 211 -5 1 1219 474 18 0 0 chr3 83152618 83152673 -76447110 + (TG)n Simple_repeat Simple_repeat 2 56 0 1 1219 904 61 315 13 chr3 83152855 83153004 -76446779 + B2_Mm2 SINE B2 1 194 -1 2 1219 1817 202 42 11 chr3 83153354 83153710 -76446073 - ORR1B2 LTR MaLR 0 367 1 2 1219 7947 170 50 10 chr3 83153710 83155161 -76444622 - ORR1B2-int LTR MaLR 0 1509 1 2 1219 1720 149 141 15 chr3 83155161 83155487 -76444296 - ORR1B2 LTR MaLR 0 367 1 2 1219 741 23 0 0 chr3 83157128 83157215 -76442568 + (TG)n Simple_repeat Simple_repeat 1 87 0 2 1219 518 256 0 17 chr3 83157269 83157388 -76442395 - PB1D10 SINE Alu 0 117 1 2 1219 182 260 75 88 chr3 83157859 83157939 -76441844 - L2b LINE L2 -94 3281 3203 2 1219 189 0 0 0 chr3 83160602 83160623 -76439160 + (TG)n Simple_repeat Simple_repeat 1 21 0 2 1219 416 297 97 0 chr3 83164776 83164921 -76434862 + B3 SINE B2 41 199 -17 2 1219 364 245 111 62 chr3 83166462 83166688 -76433095 + L1M7 LINE L1 1132 1368 -4850 2 1219 243 125 0 0 chr3 83166825 83166865 -76432918 + (TCTCTG)n Simple_repeat Simple_repeat 2 41 0 2 1219 318 26 0 0 chr3 83167044 83167083 -76432700 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 2 1219 363 159 15 29 chr3 83167570 83167706 -76432077 + (TA)n Simple_repeat Simple_repeat 2 135 0 2 1219 843 300 91 33 chr3 83168204 83168863 -76430920 + L1MB8 LINE L1 5480 6176 -2 2 1219 688 368 43 14 chr3 83169874 83170150 -76429633 + B4A SINE B4 1 284 -8 2 1219 207 314 29 0 chr3 83170156 83170195 -76429588 + (CATATA)n Simple_repeat Simple_repeat 3 43 0 2 1219 402 100 0 0 chr3 83170195 83170255 -76429528 + (CA)n Simple_repeat Simple_repeat 1 60 0 2 1219 207 314 29 0 chr3 83170255 83170317 -76429466 + (CATATA)n Simple_repeat Simple_repeat 2 64 0 2 1219 292 312 0 0 chr3 83170637 83170717 -76429066 - ID4 SINE ID -2 81 2 2 1219 347 294 146 24 chr3 83170922 83171176 -76428607 + L1ME3B LINE L1 5630 5914 -326 2 1219 368 313 24 80 chr3 83173093 83173218 -76426565 + B1F2 SINE Alu 27 144 -5 2 1219 224 267 63 51 chr3 83173461 83173540 -76426243 + B4 SINE B4 2 81 -211 2 1219 616 238 25 10 chr3 83173469 83173641 -76426142 + B3 SINE B2 10 186 -12 2 1219 180 77 0 0 chr3 83173641 83173667 -76426116 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 2 1219 384 211 256 8 chr3 83173911 83174040 -76425743 + MLT2B5 LTR ERVL 10 170 -547 2 1219 250 351 46 7 chr3 83174134 83174286 -76425497 + MLT2B2 LTR ERVL 397 554 -8 2 1219 637 171 19 0 chr3 83174708 83174813 -76424970 + MTC LTR MaLR 1 107 -314 2 1219 3760 70 16 2 chr3 83174837 83175337 -76424446 + L1_Mus3 LINE L1 6117 6623 -15 2 1219 1734 172 51 9 chr3 83175356 83175672 -76424111 + MTC LTR MaLR 93 421 0 2 1219 939 295 49 19 chr3 83175753 83176016 -76423767 + B4A SINE B4 14 284 -8 2 1219 191 329 0 40 chr3 83176497 83176573 -76423210 + MIR SINE MIR 189 261 -1 2 1219 3480 92 18 10 chr3 83181660 83182162 -76417621 + L1_Mus4 LINE L1 6116 6621 -15 2 1219 3159 89 19 4 chr3 83182165 83182650 -76417133 + L1Md_T LINE L1 422 913 -5811 2 1219 4702 59 0 2 chr3 83182649 83183277 -76416506 + L1Md_F2 LINE L1 4960 5586 -297 2 1219 7974 51 1 9 chr3 83183277 83184281 -76415502 + L1Md_F2 LINE L1 5587 6582 0 2 1219 35073 26 0 7 chr3 83184290 83189014 -76410769 + L1Md_T LINE L1 906 5586 -297 2 1219 8269 39 2 0 chr3 83189015 83190007 -76409776 + L1Md_T LINE L1 5588 6581 -1 2 1219 815 253 105 56 chr3 83190094 83190562 -76409221 - L1MA8 LINE L1 -2 6289 5799 2 1219 2760 174 84 9 chr3 83190581 83190715 -76409068 + L1_Mur3 LINE L1 4746 4888 -992 2 1219 937 141 183 0 chr3 83190715 83190906 -76408877 + URR1A DNA MER1_type 1 226 0 2 1219 2760 174 84 9 chr3 83190906 83191413 -76408370 + L1_Mur3 LINE L1 4889 5435 -445 2 1219 243 195 67 22 chr3 83191644 83191733 -76408050 + L1MB4 LINE L1 6071 6163 -17 2 1219 336 337 10 0 chr3 83192649 83192750 -76407033 - MER20 DNA MER1_type -11 208 107 2 1219 746 245 178 7 chr3 83193281 83193556 -76406227 - Lx9 LINE L1 -1154 6490 6169 2 1219 260 226 33 77 chr3 83193547 83193638 -76406145 - L1MEb LINE L1 -3851 2295 2209 2 1219 330 359 75 27 chr3 83193760 83193906 -76405877 - L1MEb LINE L1 -5597 539 387 2 1219 2649 150 57 6 chr3 83194005 83194500 -76405283 + RLTR11A2 LTR ERVK 8 527 0 2 1219 12852 66 2 6 chr3 83194703 83197172 -76402611 - L1Md_F2 LINE L1 0 6582 4122 2 1219 744 167 32 0 chr3 83197172 83197298 -76402485 - RLTR27 LTR ERVK -179 130 1 2 1219 1415 130 27 30 chr3 83197298 83197560 -76402223 - MMERVK10C-int LTR ERVK 0 7581 7321 2 1219 199 206 91 45 chr3 83197695 83197761 -76402022 - MIR3 SINE MIR -54 154 86 2 1219 580 330 7 3 chr3 83197990 83198273 -76401510 - MMERVK10C-int LTR ERVK -807 6774 6491 2 1219 5066 304 45 39 chr3 83198386 83202629 -76397154 - MMERVK10C-int LTR ERVK -2104 5477 720 2 1219 274 237 0 0 chr3 83202821 83202897 -76396886 - MMERVK10C-int LTR ERVK -6765 915 840 2 1219 569 241 98 57 chr3 83202959 83203205 -76396578 - MMERVK10C-int LTR ERVK -1077 910 655 2 1219 362 45 7 0 chr3 83203236 83203289 -76396494 - MMERVK10C-int LTR ERVK -7314 267 163 2 1219 1658 184 19 30 chr3 83203313 83203638 -76396145 - RLTR27 LTR ERVK 0 309 1 2 1219 423 0 0 0 chr3 83203890 83203937 -76395846 + (GA)n Simple_repeat Simple_repeat 2 48 0 2 1219 234 304 161 0 chr3 83204666 83204778 -76395005 - MIR SINE MIR -2 260 131 2 1219 600 40 0 0 chr3 83205180 83205255 -76394528 + (TTTC)n Simple_repeat Simple_repeat 2 76 0 2 1219 441 84 0 0 chr3 83206163 83206234 -76393549 + (A)n Simple_repeat Simple_repeat 1 71 0 2 1219 443 352 57 90 chr3 83206304 83206672 -76393111 - ORR1E LTR MaLR 0 359 4 2 1219 1624 82 5 5 chr3 83207056 83207303 -76392480 + Lx LINE L1 6215 6455 -199 2 1219 591 108 0 0 chr3 83207841 83207934 -76391849 + (TAGA)n Simple_repeat Simple_repeat 1 93 0 2 1219 21 0 0 0 chr3 83209519 83209540 -76390243 + AT_rich Low_complexity Low_complexity 1 21 0 2 1219 593 209 13 97 chr3 83209888 83210042 -76389741 + MTD LTR MaLR 1 141 -278 2 1219 7479 99 9 2 chr3 83210044 83211502 -76388281 + L1_Mus3 LINE L1 5152 6626 -12 2 1219 796 259 154 4 chr3 83211521 83211754 -76388029 + MTD LTR MaLR 138 405 -14 2 1219 4153 114 11 43 chr3 83211794 83212167 -76387616 + L1Md_F3 LINE L1 619 997 -5727 2 1219 1819 111 15 62 chr3 83212167 83212505 -76387278 + RLTRETN_Mm LTR ERVK 1 322 0 2 1219 31683 68 11 11 chr3 83212505 83213506 -76386277 + L1Md_F3 LINE L1 998 1969 -3914 2 1219 243 0 0 0 chr3 83213506 83213533 -76386250 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2 1219 31683 54 11 2 chr3 83213533 83217108 -76382675 + L1Md_F3 LINE L1 1970 5586 -297 2 1219 8076 51 3 0 chr3 83217109 83218103 -76381680 + L1Md_F3 LINE L1 5588 6584 0 2 1219 628 279 80 40 chr3 83218141 83218417 -76381366 + Charlie1b DNA MER1_type 27 313 -210 2 1219 1210 197 18 187 chr3 83219209 83219652 -76380131 + ORR1D1 LTR MaLR 1 368 -6 2 1219 562 286 103 11 chr3 83219648 83219832 -76379951 + B4A SINE B4 28 228 -64 2 1219 1791 241 24 46 chr3 83220158 83220754 -76379029 + Lx5 LINE L1 5920 6736 -724 2 1219 218 32 0 31 chr3 83220754 83220786 -76378997 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 2 1219 997 238 6 69 chr3 83220786 83220874 -76378909 + Lx5 LINE L1 6737 6805 -655 2 1219 6272 82 65 1 chr3 83220899 83222162 -76377621 - L1_Mus1 LINE L1 0 6654 5234 2 1219 1979 274 53 19 chr3 83222178 83222706 -76377077 + Lx5 LINE L1 6505 7050 0 2 1219 432 0 0 0 chr3 83222712 83222760 -76377023 + (GGAA)n Simple_repeat Simple_repeat 3 50 0 2 1219 315 0 0 0 chr3 83222808 83222843 -76376940 + (TGAA)n Simple_repeat Simple_repeat 3 37 0 2 1219 4057 294 101 21 chr3 83223024 83223939 -76375844 + L1_Mur3 LINE L1 1258 2331 -3549 2 1219 3279 54 36 3 chr3 83223939 83224326 -76375457 - MTB LTR MaLR 0 400 1 2 1219 4057 274 63 20 chr3 83224326 83225640 -76374143 + L1_Mur3 LINE L1 2322 3694 -2183 2 1219 1860 301 30 14 chr3 83225620 83226179 -76373604 - Lx8 LINE L1 -536 6937 6370 2 1219 230 274 0 76 chr3 83226223 83226302 -76373481 - Lx7 LINE L1 -1494 6202 6130 2 1219 237 268 14 0 chr3 83226333 83226404 -76373379 + Lx7 LINE L1 6950 7021 -675 2 1219 356 261 0 32 chr3 83226534 83226629 -76373154 + Lx8 LINE L1 7072 7163 -310 2 1219 2235 294 67 51 chr3 83226627 83227444 -76372339 + Lx8 LINE L1 6557 7392 -81 2 1219 976 224 104 0 chr3 83227444 83227636 -76372147 + B3 SINE B2 2 213 -3 2 1219 2235 294 67 51 chr3 83227636 83227714 -76372069 + Lx8 LINE L1 7393 7466 -7 2 1219 467 73 15 0 chr3 83227812 83227880 -76371903 + (CA)n Simple_repeat Simple_repeat 2 70 0 2 1219 346 128 16 49 chr3 83229111 83229234 -76370549 + C-rich Low_complexity Low_complexity 3 121 0 2 1219 1282 159 18 22 chr3 83229950 83230175 -76369608 - URR1A DNA MER1_type -2 224 1 2 1219 604 300 58 81 chr3 83230201 83230459 -76369324 - B4A SINE B4 0 292 41 2 152 488 263 144 106 chr3 83230476 83230740 -76369043 - MLT1A0 LTR MaLR -40 325 52 2 1220 307 245 15 5 chr3 83230856 83230940 -76368843 - BC1_Mm scRNA scRNA -65 87 5 2 1220 4285 178 27 49 chr3 83231104 83231918 -76367865 - RMER19B LTR ERVK -106 796 1 2 1220 182 344 155 25 chr3 83232073 83232234 -76367549 - MIRc SINE MIR -21 247 66 2 1220 669 41 0 30 chr3 83232502 83232602 -76367181 + (TG)n Simple_repeat Simple_repeat 2 98 0 2 1220 407 279 25 8 chr3 83232605 83232730 -76367053 - B3A SINE B2 -66 127 6 2 1220 511 269 52 7 chr3 83233295 83233430 -76366353 - MER5B DNA MER1_type -32 146 6 2 1220 863 104 19 13 chr3 83234471 83234627 -76365156 + (GGGA)n Simple_repeat Simple_repeat 4 160 0 2 1220 426 108 0 0 chr3 83235070 83235135 -76364648 + (CCCCCT)n Simple_repeat Simple_repeat 6 70 0 2 1220 23 0 0 0 chr3 83235297 83235320 -76364463 + AT_rich Low_complexity Low_complexity 1 23 0 2 1220 948 232 10 10 chr3 83235619 83235811 -76363972 - B3 SINE B2 -6 210 19 2 1220 180 0 0 0 chr3 83235933 83235953 -76363830 + (TA)n Simple_repeat Simple_repeat 1 20 0 2 1220 5331 122 15 9 chr3 83236314 83237070 -76362713 - Lx4A LINE L1 -2 7056 6297 2 1220 228 200 75 62 chr3 83237339 83237419 -76362364 + L2a LINE L2 3342 3422 -4 2 1220 232 307 52 9 chr3 83237419 83237534 -76362249 + L1MEg LINE L1 811 930 -5154 2 1220 678 212 33 46 chr3 83238995 83239036 -76360747 + B3 SINE B2 1 46 -170 2 1220 1177 90 0 0 chr3 83239036 83239181 -76360602 + B1_Mm SINE Alu 2 146 -1 2 1220 390 42 0 0 chr3 83239191 83239239 -76360544 + (GA)n Simple_repeat Simple_repeat 2 49 0 2 1220 678 212 33 46 chr3 83239239 83239339 -76360444 + B3 SINE B2 54 151 -65 2 1220 1144 197 96 136 chr3 83239359 83239764 -76360019 + ORR1B1 LTR MaLR 1 389 -5 2 1220 434 324 33 33 chr3 83239924 83240077 -76359706 + MER5B DNA MER1_type 20 172 -6 2 1220 359 287 82 98 chr3 83240389 83240644 -76359139 + L1MEg1 LINE L1 107 323 -5912 2 1220 355 276 57 9 chr3 83240645 83240751 -76359032 + L1MEg1 LINE L1 1357 1467 -5866 2 1220 742 190 184 5 chr3 83241068 83241253 -76358530 + URR1B DNA MER1_type 8 225 0 2 1220 643 286 44 110 chr3 83241304 83241712 -76358071 + L1MA4A LINE L1 5519 5899 -404 2 1220 373 236 172 7 chr3 83241993 83242138 -76357645 + L1MC1 LINE L1 5997 6165 -168 3 1220 271 316 128 47 chr3 83242156 83242584 -76357199 + L1MEg1 LINE L1 3462 3924 -3313 2 1220 320 268 34 23 chr3 83242586 83242674 -76357109 + BC1_Mm scRNA scRNA 6 94 -58 3 1220 254 243 164 64 chr3 83243117 83243227 -76356556 + L1MCa LINE L1 9 129 -6379 3 1220 256 111 32 0 chr3 83243436 83243499 -76356284 + (TTTTTG)n Simple_repeat Simple_repeat 2 66 0 3 1220 390 21 0 0 chr3 83243561 83243608 -76356175 + (GA)n Simple_repeat Simple_repeat 2 48 0 3 1220 745 294 33 14 chr3 83243981 83244195 -76355588 + ID_B1 SINE B4 5 222 -2 3 1220 313 257 135 19 chr3 83244419 83244588 -76355195 + L1MCa LINE L1 2521 2708 -3613 3 1220 924 155 6 77 chr3 83244591 83244773 -76355010 + RLTR24 LTR ERV1 1 169 -360 3 1220 846 169 128 0 chr3 83244772 83244944 -76354839 + RLTR24 LTR ERV1 336 529 0 3 1220 978 252 144 38 chr3 83244980 83245459 -76354324 + L1MCa LINE L1 2769 3298 -3023 3 1220 247 303 64 24 chr3 83245426 83245551 -76354232 + L1MC3 LINE L1 7351 7480 -305 3 1220 818 248 48 36 chr3 83246057 83246308 -76353475 + Lx8 LINE L1 7210 7463 -10 3 1220 198 0 0 0 chr3 83246920 83246942 -76352841 + (CAAAAA)n Simple_repeat Simple_repeat 1 22 0 3 1220 8188 54 2 0 chr3 83247029 83248706 -76351077 - L1Md_F2 LINE L1 -12 6570 4892 3 1220 278 250 278 10 chr3 83249046 83249143 -76350640 - MTEb LTR MaLR 0 379 257 3 1220 188 316 92 42 chr3 83250429 83250571 -76349212 - MIRc SINE MIR -117 151 3 3 1220 470 317 66 6 chr3 83250897 83251078 -76348705 - MLT1A0 LTR MaLR 0 365 174 3 1220 404 308 38 9 chr3 83251125 83251230 -76348553 - PB1D10 SINE Alu -6 111 4 3 1220 384 111 0 0 chr3 83251985 83252048 -76347735 + (CA)n Simple_repeat Simple_repeat 1 63 0 3 1220 6859 191 53 48 chr3 83252053 83253660 -76346123 - RMER3D-int LTR ERVK -9 2833 1219 3 1220 231 61 0 0 chr3 83253664 83253697 -76346086 + (CAAAA)n Simple_repeat Simple_repeat 2 34 0 3 1220 1101 155 18 30 chr3 83253699 83253942 -76345841 - RMER3D-int LTR ERVK -1614 1228 1020 3 1220 859 221 112 48 chr3 83253938 83254416 -76345367 - RMER3D-int LTR ERVK -1763 1079 476 3 1220 225 273 75 15 chr3 83254422 83254489 -76345294 + MLT-int LTR MaLR 1492 1562 -173 3 1220 293 214 13 79 chr3 83254490 83254566 -76345217 - RMER3D-int LTR ERVK -2606 236 166 3 1220 527 227 0 35 chr3 83254577 83254691 -76345092 - RMER3D-int LTR ERVK -2732 110 1 3 1220 2673 176 51 13 chr3 83254691 83255164 -76344619 - RLTR17 LTR ERVK 0 692 202 3 1220 3759 65 18 0 chr3 83256330 83256788 -76342995 - L1_Mus1 LINE L1 -1 6566 6101 3 1220 1242 106 0 13 chr3 83256788 83256989 -76342794 + L1_Mus1 LINE L1 5981 6135 -432 3 1220 222 216 0 19 chr3 83258321 83258373 -76341410 + CT-rich Low_complexity Low_complexity 2 52 0 3 1220 247 308 0 133 chr3 83259245 83259365 -76340418 + MT2B2 LTR ERVL 148 251 -333 3 1220 334 307 0 65 chr3 83259260 83259368 -76340415 + ID_B1 SINE B4 79 179 -45 3 1220 505 265 0 10 chr3 83259275 83259378 -76340405 + PB1D10 SINE Alu 7 108 -9 3 1220 207 0 0 0 chr3 83263089 83263112 -76336671 + (TC)n Simple_repeat Simple_repeat 2 24 0 3 1220 242 288 26 18 chr3 83263127 83263203 -76336580 + (TG)n Simple_repeat Simple_repeat 1 77 0 3 1220 213 108 0 0 chr3 83263203 83263240 -76336543 + (TA)n Simple_repeat Simple_repeat 1 37 0 3 1220 242 288 26 18 chr3 83263240 83263276 -76336507 + (TG)n Simple_repeat Simple_repeat 1 36 0 3 1220 21 36 0 0 chr3 83263370 83263398 -76336385 + AT_rich Low_complexity Low_complexity 1 28 0 3 1220 4505 64 19 58 chr3 83264749 83265611 -76334172 - L1VL2 LINE L1 -2438 1177 358 3 1220 24 0 0 0 chr3 83266804 83266828 -76332955 + AT_rich Low_complexity Low_complexity 1 24 0 3 1220 236 351 98 46 chr3 83267389 83267583 -76332200 + MTE2a LTR MaLR 51 254 -105 3 1220 240 230 51 89 chr3 83267601 83267721 -76332062 + MTE2a LTR MaLR 280 368 -11 3 1220 16940 89 18 7 chr3 83268382 83271619 -76328164 + L1VL4 LINE L1 6 3278 -281 3 1220 457 205 5 5 chr3 83271619 83271727 -76328056 + L1M2 LINE L1 3655 3765 -2381 3 1220 2846 64 6 17 chr3 83273152 83273501 -76326282 - IAPLTR4 LTR ERVK 0 345 1 3 1220 1017 97 37 0 chr3 83273835 83273969 -76325814 + B1_Mus1 SINE Alu 2 140 -8 3 1220 286 23 0 44 chr3 83273969 83274014 -76325769 + (CAAAC)n Simple_repeat Simple_repeat 2 44 0 3 1220 2647 26 10 16 chr3 83275304 83275617 -76324166 + L1Md_F3 LINE L1 6274 6584 0 3 1220 345 326 94 13 chr3 83275639 83275788 -76323995 + B4 SINE B4 109 269 -23 3 1220 624 14 0 0 chr3 83275788 83275861 -76323922 + (CA)n Simple_repeat Simple_repeat 2 74 0 3 1220 274 256 142 13 chr3 83275911 83276020 -76323763 + B1F1 SINE Alu 22 140 -9 3 1220 480 286 35 54 chr3 83276327 83276530 -76323253 + MER121 Unknown Unknown 32 230 -182 3 1220 313 318 69 53 chr3 83277398 83277605 -76322178 + MER57C2 LTR ERV1 182 403 -31 3 1220 237 315 65 10 chr3 83278039 83278189 -76321594 - MIR SINE MIR -44 224 59 3 1220 244 224 35 0 chr3 83278434 83278492 -76321291 - L3 LINE CR1 -470 4019 3960 3 1220 578 219 8 45 chr3 83278825 83278959 -76320824 - Lx8 LINE L1 -586 6887 6759 3 1220 620 230 24 0 chr3 83278959 83279085 -76320698 + B1_Mus2 SINE Alu 18 146 -1 3 1220 302 194 91 65 chr3 83279106 83279183 -76320600 - Lx8 LINE L1 -712 6761 6683 3 1220 1014 306 67 62 chr3 83279877 83280592 -76319191 - L1MB8 LINE L1 -84 6094 5376 3 1220 276 179 0 0 chr3 83281147 83281203 -76318580 - Lx4A LINE L1 0 7058 7003 3 1220 2950 144 47 61 chr3 83281439 83282032 -76317751 + RMER4B LTR ERVK 1 585 0 3 1220 415 336 54 54 chr3 83282775 83283055 -76316728 + B4 SINE B4 1 280 -12 3 1220 234 81 0 0 chr3 83283080 83283117 -76316666 + (CA)n Simple_repeat Simple_repeat 2 38 0 3 1220 415 324 35 17 chr3 83284961 83285134 -76314649 - MLT1A0 LTR MaLR -66 299 124 3 1220 1950 163 24 19 chr3 83285610 83285980 -76313803 - Lx4B LINE L1 -4 7054 6683 3 1220 342 115 0 0 chr3 83286472 83286524 -76313259 + (TC)n Simple_repeat Simple_repeat 1 52 0 3 1220 355 159 0 21 chr3 83286629 83286725 -76313058 + (CA)n Simple_repeat Simple_repeat 1 94 0 3 1220 247 236 33 11 chr3 83287834 83287924 -76311859 + L1MC LINE L1 5708 5799 -2083 3 1220 1739 197 101 95 chr3 83287936 83288441 -76311342 + RLTR18B LTR ERVK 1 508 -4 3 1220 425 271 299 19 chr3 83288576 83288895 -76310888 - MLT1A1 LTR MaLR 0 408 1 3 1220 204 67 0 0 chr3 83290823 83290853 -76308930 + (T)n Simple_repeat Simple_repeat 1 30 0 3 1220 504 86 0 0 chr3 83291431 83291501 -76308282 + (CTA)n Simple_repeat Simple_repeat 2 71 0 3 1220 1099 220 136 16 chr3 83292578 83292901 -76306882 - ORR1D2 LTR MaLR -2 368 7 3 1220 4537 210 80 96 chr3 83292909 83294302 -76305481 - ORR1D2-int LTR MaLR 0 1370 1 3 1220 1151 230 131 27 chr3 83294302 83294637 -76305146 - ORR1D2 LTR MaLR 0 370 1 3 1220 371 114 25 0 chr3 83294708 83294787 -76304996 + (CAGA)n Simple_repeat Simple_repeat 4 84 0 3 1220 306 0 0 0 chr3 83295482 83295516 -76304267 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 3 1220 1366 231 95 3 chr3 83296163 83296501 -76303282 + ORR1D2 LTR MaLR 1 369 -1 3 1220 376 226 97 0 chr3 83296612 83296705 -76303078 + RSINE1 SINE B4 4 105 -60 3 1220 555 107 0 0 chr3 83296747 83296831 -76302952 + (CA)n Simple_repeat Simple_repeat 1 84 0 3 1220 712 327 75 49 chr3 83297256 83297681 -76302102 - MLT1C LTR MaLR -18 449 14 3 1220 7211 79 84 9 chr3 83298036 83299065 -76300718 - Lx3_Mus LINE L1 -63 5823 4718 3 1220 7088 96 47 81 chr3 83299067 83300305 -76299478 + Lx3_Mus LINE L1 5796 6991 -18 3 1220 186 43 0 0 chr3 83300306 83300329 -76299454 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 3 1220 347 286 19 19 chr3 83300481 83300588 -76299195 - PB1D10 SINE Alu -6 111 5 3 1220 266 109 0 35 chr3 83300816 83300873 -76298910 + (CAGAGA)n Simple_repeat Simple_repeat 3 57 0 3 1220 701 145 106 8 chr3 83300983 83301115 -76298668 - URR1A DNA MER1_type -46 180 36 3 1220 2178 104 3 3 chr3 83301547 83301856 -76297927 - Lx2 LINE L1 0 6997 6689 3 1220 824 296 43 79 chr3 83302228 83302621 -76297162 - MTEa LTR MaLR 0 379 1 3 1220 1858 142 78 14 chr3 83302959 83303303 -76296480 - ORR1B2 LTR MaLR -1 366 1 3 1220 703 220 6 59 chr3 83303953 83304122 -76295661 + B3A SINE B2 1 160 -38 3 1220 297 0 0 0 chr3 83304132 83304165 -76295618 + (CA)n Simple_repeat Simple_repeat 2 34 0 3 1220 642 269 267 20 chr3 83305629 83305925 -76293858 - Lx9 LINE L1 -958 6686 6318 3 1220 1217 222 63 23 chr3 83306092 83306447 -76293336 - Lx9 LINE L1 -1670 5974 5562 3 1220 1965 162 29 3 chr3 83306507 83306853 -76292930 + RLTR15 LTR ERVK 5 359 0 3 1220 480 269 155 45 chr3 83307936 83308351 -76291432 + MER90 LTR ERV1 1 498 -116 3 1220 369 342 0 0 chr3 83309218 83309335 -76290448 + PB1D10 SINE Alu 1 117 0 3 1220 225 0 0 0 chr3 83309652 83309677 -76290106 + (TGAA)n Simple_repeat Simple_repeat 4 28 0 3 1220 727 267 47 33 chr3 83310603 83310658 -76289125 - B3 SINE B2 0 216 166 3 1220 408 20 0 0 chr3 83310658 83310707 -76289076 + (TG)n Simple_repeat Simple_repeat 2 50 0 3 1220 727 267 47 33 chr3 83310707 83310864 -76288919 - B3 SINE B2 -51 165 1 3 1220 210 71 0 0 chr3 83311323 83311351 -76288432 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 3 1220 611 295 47 30 chr3 83312443 83312758 -76287025 + Lx7 LINE L1 7131 7473 0 3 1220 269 26 26 0 chr3 83314029 83314067 -76285716 + (TTTG)n Simple_repeat Simple_repeat 1 39 0 3 1220 516 316 137 16 chr3 83314245 83314625 -76285158 + MLT1C LTR MaLR 1 426 -41 3 1220 607 229 49 14 chr3 83315106 83315248 -76284535 - RSINE1 SINE B4 -15 150 4 3 1220 209 161 0 0 chr3 83315656 83315687 -76284096 + (CAG)n Simple_repeat Simple_repeat 2 32 0 3 1220 261 98 0 0 chr3 83315690 83315731 -76284052 + (TGG)n Simple_repeat Simple_repeat 3 43 0 3 1220 297 0 0 0 chr3 83316451 83316484 -76283299 + (TC)n Simple_repeat Simple_repeat 2 34 0 3 1220 507 33 0 0 chr3 83316484 83316544 -76283239 + (TG)n Simple_repeat Simple_repeat 2 62 0 3 1220 1217 239 69 11 chr3 83317071 83317346 -76282437 - Lx8 LINE L1 -144 7329 7039 3 1220 464 215 26 53 chr3 83317349 83317462 -76282321 - PB1D10 SINE Alu -2 115 6 3 1220 997 127 75 46 chr3 83317807 83317981 -76281802 + B2_Mm2 SINE B2 3 181 -14 3 1220 4332 73 10 25 chr3 83317992 83318585 -76281198 - L1_Mus3 LINE L1 -7 6631 6048 3 1220 392 198 18 28 chr3 83320267 83320376 -76279407 + HAL1-2a_MD LINE L1 2333 2440 -584 3 1220 589 235 0 22 chr3 83320617 83320756 -76279027 + MER77 LTR ERVL 462 597 -10 4 1220 559 327 137 75 chr3 83320764 83321230 -76278553 - MLT1D LTR MaLR -4 501 7 4 1220 183 295 25 13 chr3 83322933 83323012 -76276771 - MIR SINE MIR -70 192 113 4 1220 1670 165 35 126 chr3 83323273 83323724 -76276059 + RMER17C LTR ERVK 1 410 0 4 1220 192 77 0 0 chr3 83323746 83323772 -76276011 + (TTGG)n Simple_repeat Simple_repeat 2 27 0 4 1220 495 107 0 0 chr3 83325245 83325320 -76274463 + (TG)n Simple_repeat Simple_repeat 2 76 0 4 1220 231 344 0 0 chr3 83325459 83325523 -76274260 - ID4 SINE ID 0 83 20 4 1220 445 294 21 29 chr3 83325539 83325679 -76274104 - B1F1 SINE Alu -8 141 3 4 1220 846 97 0 0 chr3 83325840 83325964 -76273819 + B1_Mus1 SINE Alu 2 125 -23 4 1220 450 0 0 0 chr3 83325964 83326014 -76273769 + (TAAA)n Simple_repeat Simple_repeat 2 51 0 4 1220 2284 82 0 0 chr3 83326487 83326804 -76272979 - ORR1A2 LTR MaLR -8 319 3 4 1220 596 329 176 60 chr3 83326894 83327501 -76272282 + MER21B LTR ERV1 14 690 -173 4 1220 1546 105 4 4 chr3 83327501 83327731 -76272052 + L1_Mus4 LINE L1 6406 6635 -1 4 1220 288 308 0 0 chr3 83329015 83329093 -76270690 + RSINE1 SINE B4 2 79 -86 4 1220 576 95 0 0 chr3 83329108 83329192 -76270591 + (CA)n Simple_repeat Simple_repeat 1 84 0 4 1220 273 177 12 25 chr3 83329198 83329279 -76270504 + GA-rich Low_complexity Low_complexity 2 81 0 4 1220 641 257 7 0 chr3 83329281 83329421 -76270362 + B1_Mur1 SINE Alu 1 141 -8 4 1220 4590 42 13 5 chr3 83329498 83330055 -76269728 - L1Md_T LINE L1 0 6582 6022 4 1220 483 18 0 0 chr3 83330929 83330985 -76268798 + (TAAA)n Simple_repeat Simple_repeat 4 59 0 4 1220 353 141 47 0 chr3 83331207 83331271 -76268512 + URR1B DNA MER1_type 158 224 -1 4 1220 522 274 135 60 chr3 83331496 83331830 -76267953 - MLT1A LTR MaLR 0 374 16 4 1220 420 287 75 52 chr3 83332607 83332780 -76267003 - MLT1D LTR MaLR -287 218 42 4 1220 221 291 38 38 chr3 83332988 83333120 -76266663 + L2a LINE L2 3118 3249 -177 4 1220 241 259 0 0 chr3 83333162 83333216 -76266567 + T-rich Low_complexity Low_complexity 2 55 0 4 1220 312 143 0 0 chr3 83333216 83333286 -76266497 + (CA)n Simple_repeat Simple_repeat 1 70 0 4 1220 260 311 105 51 chr3 83333507 83333859 -76265924 - HAL1 LINE L1 -2126 381 11 4 1220 200 357 0 35 chr3 83335412 83335528 -76264255 - MIR SINE MIR -65 197 86 4 1220 468 0 0 0 chr3 83335630 83335682 -76264101 + (GGAA)n Simple_repeat Simple_repeat 2 53 0 4 1220 933 91 0 25 chr3 83335693 83335851 -76263932 + (GAAA)n Simple_repeat Simple_repeat 4 157 0 4 1220 310 245 6 36 chr3 83335860 83336025 -76263758 + GA-rich Low_complexity Low_complexity 4 163 0 4 1220 756 205 0 0 chr3 83336985 83337156 -76262627 + (TG)n Simple_repeat Simple_repeat 2 172 0 4 1220 359 263 30 10 chr3 83337372 83337472 -76262311 + MTD LTR MaLR 2 103 -316 4 1220 1141 199 53 84 chr3 83337530 83337887 -76261896 - Lx7 LINE L1 0 7696 7351 4 1220 2519 79 6 9 chr3 83337892 83338238 -76261545 + L1_Mus3 LINE L1 6287 6631 -7 4 1220 1427 207 34 0 chr3 83338350 83338645 -76261138 + MTD LTR MaLR 115 419 0 4 1220 466 298 5 25 chr3 83338645 83338838 -76260945 + Tigger5 DNA MER2_type 2204 2392 -14 4 1220 262 281 0 15 chr3 83338897 83338962 -76260821 + MIRm SINE MIR 76 139 -137 4 1220 200 344 21 11 chr3 83339157 83339251 -76260532 - MIR3 SINE MIR -21 187 93 4 1220 7383 42 17 9 chr3 83339526 83340424 -76259359 - L1Md_F2 LINE L1 -12 6570 5666 4 1220 2344 65 0 0 chr3 83340416 83340717 -76259066 + L1Md_F2 LINE L1 5351 5651 -933 4 1220 513 170 0 11 chr3 83342310 83342405 -76257378 + Lx3C LINE L1 6881 6974 -2 4 1220 675 103 32 46 chr3 83343167 83343459 -76256324 + CT-rich Low_complexity Low_complexity 1 287 0 4 1220 342 173 0 0 chr3 83346166 83346218 -76253565 + B1_Mur4 SINE Alu 2 53 -97 4 1220 247 275 14 14 chr3 83346218 83346236 -76253547 + B4A SINE B4 87 156 -136 4 1220 2433 85 6 0 chr3 83346236 83346553 -76253230 - L1_Mus3 LINE L1 -351 6285 5967 4 1220 2184 63 16 56 chr3 83346553 83346874 -76252909 + L1_Mus3 LINE L1 6331 6638 0 4 1220 559 144 10 0 chr3 83346884 83346981 -76252802 + B1_Mur3 SINE Alu 42 139 -10 4 1220 221 189 22 0 chr3 83347419 83347471 -76252312 - MIRm SINE MIR -108 154 102 4 1220 36190 4 0 0 chr3 83347471 83351499 -76248284 + L1Md_A LINE L1 1559 5586 -297 4 1220 9239 1 0 0 chr3 83351499 83352495 -76247288 + L1Md_A LINE L1 5587 6582 0 4 1220 344 227 13 0 chr3 83352600 83352675 -76247108 - MIR SINE MIR -108 154 79 4 1220 217 233 78 52 chr3 83353915 83353992 -76245791 + L2a LINE L2 3348 3426 0 4 1220 233 211 117 63 chr3 83355107 83355218 -76244565 - L1M3 LINE L1 -664 5525 5409 4 1220 1021 228 161 9 chr3 83355450 83355767 -76244016 - MTE2a LTR MaLR 0 379 15 4 1220 206 214 0 0 chr3 83356090 83356132 -76243651 + GA-rich Low_complexity Low_complexity 2 43 0 4 1220 21 0 0 0 chr3 83356219 83356240 -76243543 + AT_rich Low_complexity Low_complexity 1 21 0 4 1220 531 0 0 0 chr3 83359035 83359094 -76240689 + (TC)n Simple_repeat Simple_repeat 2 60 0 4 1220 456 19 0 0 chr3 83359094 83359146 -76240637 + (TG)n Simple_repeat Simple_repeat 2 54 0 4 1220 779 226 38 22 chr3 83360045 83360230 -76239553 - B3 SINE B2 -27 189 2 4 1220 297 0 0 0 chr3 83360232 83360265 -76239518 + (CA)n Simple_repeat Simple_repeat 1 33 0 4 1220 249 0 73 0 chr3 83361452 83361493 -76238290 + (CAAAA)n Simple_repeat Simple_repeat 4 47 0 4 1221 26 0 0 0 chr3 83361922 83361948 -76237835 + AT_rich Low_complexity Low_complexity 1 26 0 4 1221 1139 202 14 0 chr3 83361954 83362167 -76237616 - B3 SINE B2 0 216 1 4 1221 794 177 14 7 chr3 83362416 83362564 -76237219 + ORR1B1 LTR MaLR 245 393 -1 4 1221 895 167 16 3 chr3 83362852 83363052 -76236731 - ORR1B1 LTR MaLR -160 234 5 4 1221 500 310 99 40 chr3 83363055 83363307 -76236476 - MER2 DNA MER2_type -77 268 2 4 1221 558 133 0 0 chr3 83363327 83363440 -76236343 + (GA)n Simple_repeat Simple_repeat 2 114 0 4 1221 399 139 30 15 chr3 83364967 83365098 -76234685 + (TA)n Simple_repeat Simple_repeat 1 133 0 4 1221 1377 52 0 0 chr3 83365308 83365482 -76234301 + (GGAGAA)n Simple_repeat Simple_repeat 4 177 0 4 1221 223 292 111 48 chr3 83366873 83366999 -76232784 + MIR SINE MIR 30 163 -99 4 1221 682 267 41 0 chr3 83367073 83367268 -76232515 + B3 SINE B2 1 203 -13 4 1221 401 303 72 38 chr3 83367336 83367573 -76232210 - MLT2B4 LTR ERVL -268 288 44 4 1221 1149 282 36 18 chr3 83367935 83368328 -76231455 + Lx9 LINE L1 7096 7495 -149 4 1221 624 157 0 0 chr3 83368997 83369144 -76230639 + (TG)n Simple_repeat Simple_repeat 1 147 0 4 1221 551 317 0 12 chr3 83369295 83369458 -76230325 + RSINE1 SINE B4 5 165 0 4 1221 239 0 0 31 chr3 83369747 83369779 -76230004 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 4 1221 2362 199 7 2 chr3 83370816 83371225 -76228558 - Lx5 LINE L1 -328 6722 6312 4 1221 789 245 128 0 chr3 83371768 83371956 -76227827 + B3 SINE B2 1 212 -4 4 1221 823 237 131 72 chr3 83372039 83372330 -76227453 - ORR1E LTR MaLR -42 317 10 4 1221 256 294 92 105 chr3 83372488 83372640 -76227143 + ORR1D2 LTR MaLR 38 187 -183 4 1221 233 373 42 0 chr3 83372898 83373016 -76226767 - MIR SINE MIR -138 124 2 4 1221 4037 58 23 2 chr3 83373285 83373800 -76225983 + L1_Mus3 LINE L1 6112 6637 -1 4 1221 729 161 0 0 chr3 83373825 83373955 -76225828 + GA-rich Low_complexity Low_complexity 3 132 0 4 1221 1295 41 15 7 chr3 83375276 83375547 -76224236 + (CA)n Simple_repeat Simple_repeat 1 273 0 4 1221 1343 67 4 27 chr3 83375822 83376382 -76223401 + (GAA)n Simple_repeat Simple_repeat 1 546 0 4 1221 225 0 0 0 chr3 83376393 83376418 -76223365 + (CAG)n Simple_repeat Simple_repeat 2 26 0 4 1221 420 319 0 0 chr3 83376703 83376816 -76222967 + MTEa LTR MaLR 267 379 0 4 1221 246 330 51 21 chr3 83376834 83377026 -76222757 + L1M5 LINE L1 5640 5836 -404 4 1221 881 334 118 13 chr3 83377026 83377148 -76222635 - MER21B LTR ERV1 -158 705 565 4 1221 2863 49 95 11 chr3 83377148 83377517 -76222266 - MTB LTR MaLR 0 400 1 4 1221 881 334 118 13 chr3 83377517 83377919 -76221864 - MER21B LTR ERV1 -299 564 126 4 1221 243 318 0 54 chr3 83378005 83378098 -76221685 - MER21B LTR ERV1 -775 88 1 4 1221 769 322 53 35 chr3 83378966 83379304 -76220479 + MER2 DNA MER2_type 1 344 -1 4 1221 27 0 0 0 chr3 83382368 83382395 -76217388 + AT_rich Low_complexity Low_complexity 1 27 0 4 1221 7599 100 21 5 chr3 83383324 83384409 -76215374 + Lx LINE L1 5582 6654 0 4 1221 424 263 84 0 chr3 83385310 83385405 -76214378 - PB1D10 SINE Alu -9 108 6 4 1221 29 0 0 0 chr3 83386027 83386056 -76213727 + AT_rich Low_complexity Low_complexity 1 29 0 4 1221 1189 239 135 3 chr3 83386120 83386447 -76213336 - ORR1D2 LTR MaLR 0 370 1 4 1221 320 279 0 12 chr3 83388274 83388441 -76211342 + (TATATG)n Simple_repeat Simple_repeat 4 168 0 4 1221 521 110 11 0 chr3 83388560 83388651 -76211132 + (TATG)n Simple_repeat Simple_repeat 1 92 0 4 1221 776 256 0 18 chr3 83388653 83388820 -76210963 - RSINE1 SINE B4 0 165 2 4 1221 1084 236 64 32 chr3 83388851 83389131 -76210652 + Lx8 LINE L1 7042 7330 -143 4 1221 216 264 0 0 chr3 83389509 83389562 -76210221 + (CAAA)n Simple_repeat Simple_repeat 3 55 0 4 1221 185 226 19 0 chr3 83391006 83391059 -76208724 + GA-rich Low_complexity Low_complexity 4 57 0 4 1221 513 128 0 0 chr3 83391048 83391150 -76208633 + (GA)n Simple_repeat Simple_repeat 1 102 0 4 1221 916 280 81 38 chr3 83391222 83391567 -76208216 - MTE2b LTR MaLR -17 362 3 4 1221 507 299 86 105 chr3 83391883 83392312 -76207471 + MER97c DNA MER1_type? 296 716 -374 5 1221 231 36 0 0 chr3 83392504 83392532 -76207251 + (TG)n Simple_repeat Simple_repeat 1 28 0 5 1221 248 315 141 35 chr3 83393434 83394032 -76205751 + HAL1 LINE L1 1011 1671 -836 5 1221 266 179 29 43 chr3 83394501 83394571 -76205212 + HAL1 LINE L1 2328 2396 -111 5 1221 181 283 67 0 chr3 83395094 83395154 -76204629 - MIRc SINE MIR -139 129 66 5 1221 514 336 46 83 chr3 83395430 83395803 -76203980 + ORR1E LTR MaLR 1 359 0 5 1221 208 93 0 65 chr3 83395939 83395955 -76203828 + A-rich Low_complexity Low_complexity 3 18 0 5 1221 1170 75 0 0 chr3 83395955 83396102 -76203681 + B1_Mus2 SINE Alu 1 147 0 5 1221 208 93 0 65 chr3 83396102 83396131 -76203652 + A-rich Low_complexity Low_complexity 19 45 0 5 1221 748 206 9 0 chr3 83396151 83396371 -76203412 + GA-rich Low_complexity Low_complexity 1 222 0 5 1221 1326 78 0 0 chr3 83396371 83396551 -76203232 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 5 1221 264 172 0 0 chr3 83398496 83398554 -76201229 + (CA)n Simple_repeat Simple_repeat 2 59 0 5 1221 689 169 1 1 chr3 83398555 83398679 -76201104 + B4 SINE B4 89 212 -80 5 1221 3147 55 29 0 chr3 83399855 83400273 -76199510 + RLTR10C LTR ERVK 1 430 -6 5 1221 547 149 21 0 chr3 83400650 83400744 -76199039 - RLTR24 LTR ERV1 -433 96 1 5 1221 925 266 62 47 chr3 83401460 83401799 -76197984 - MTE2a LTR MaLR -15 364 21 5 1221 258 284 140 14 chr3 83402729 83402872 -76196911 - MIR3 SINE MIR -8 200 40 5 1221 207 0 0 0 chr3 83403650 83403673 -76196110 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 5 1221 29 60 0 0 chr3 83404001 83404051 -76195732 + AT_rich Low_complexity Low_complexity 1 50 0 5 1221 204 319 0 27 chr3 83405172 83405246 -76194537 - MIRb SINE MIR -162 106 35 5 1221 22 56 0 0 chr3 83406132 83406168 -76193615 + AT_rich Low_complexity Low_complexity 1 36 0 5 1221 219 88 0 0 chr3 83406625 83406659 -76193124 + (CA)n Simple_repeat Simple_repeat 2 35 0 5 1221 525 32 0 0 chr3 83406692 83406755 -76193028 + (GA)n Simple_repeat Simple_repeat 1 63 0 5 1221 520 296 123 19 chr3 83406813 83407130 -76192653 - MLT1C LTR MaLR 0 467 118 5 1221 604 266 127 46 chr3 83407133 83407370 -76192413 - B4A SINE B4 -36 256 1 5 1221 211 316 52 21 chr3 83407810 83407907 -76191876 - L2a LINE L2 -20 3406 3307 5 1221 849 60 0 0 chr3 83408378 83408494 -76191289 + (TC)n Simple_repeat Simple_repeat 2 117 0 5 1221 285 98 0 0 chr3 83409012 83409053 -76190730 + (TTTG)n Simple_repeat Simple_repeat 2 42 0 5 1221 204 258 30 0 chr3 83410139 83410205 -76189578 + CT-rich Low_complexity Low_complexity 3 70 0 5 1221 22 0 0 0 chr3 83410986 83411008 -76188775 + AT_rich Low_complexity Low_complexity 1 22 0 5 1221 960 255 63 34 chr3 83411117 83411385 -76188398 - B4A SINE B4 -4 288 13 5 1221 22 0 0 0 chr3 83411486 83411508 -76188275 + AT_rich Low_complexity Low_complexity 1 22 0 5 1221 300 91 0 0 chr3 83411508 83411552 -76188231 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 5 1221 198 0 0 0 chr3 83411989 83412011 -76187772 + (TG)n Simple_repeat Simple_repeat 2 23 0 5 1221 260 137 0 19 chr3 83413038 83413090 -76186693 + (TTG)n Simple_repeat Simple_repeat 2 52 0 5 1221 1182 135 125 0 chr3 83416211 83416411 -76183372 + URR1B DNA MER1_type 1 225 0 5 1221 405 0 0 0 chr3 83418923 83418968 -76180815 + (TG)n Simple_repeat Simple_repeat 1 45 0 5 1221 450 0 0 0 chr3 83418968 83419017 -76180766 + (GA)n Simple_repeat Simple_repeat 1 50 0 5 1221 1126 205 14 0 chr3 83420716 83420926 -76178857 - B3 SINE B2 -3 213 1 5 1221 423 0 0 0 chr3 83421759 83421806 -76177977 + (TG)n Simple_repeat Simple_repeat 2 48 0 5 1221 255 61 0 0 chr3 83421888 83421921 -76177862 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 5 1221 2650 250 53 53 chr3 83422348 83423159 -76176624 - Lx8 LINE L1 -83 7390 6580 5 1221 1123 267 102 0 chr3 83423200 83423582 -76176201 - L1MA9 LINE L1 -162 6150 5730 5 1221 1089 210 9 5 chr3 83423888 83424103 -76175680 - B3 SINE B2 0 216 1 5 1221 22 0 0 0 chr3 83425451 83425473 -76174310 + AT_rich Low_complexity Low_complexity 1 22 0 5 1221 34 24 0 0 chr3 83425959 83426000 -76173783 + AT_rich Low_complexity Low_complexity 1 41 0 5 1221 1459 272 22 3 chr3 83426642 83427010 -76172773 - MTE2b LTR MaLR -4 375 1 5 1221 228 297 98 11 chr3 83427057 83427149 -76172634 - ORR1E LTR MaLR -259 100 1 5 1221 1996 197 45 5 chr3 83427867 83428270 -76171513 + MTC LTR MaLR 3 421 0 5 1221 1923 187 19 31 chr3 83428270 83428695 -76171088 + MTC-int LTR MaLR 3 422 -1087 5 1221 242 245 10 0 chr3 83429458 83429556 -76170227 + GA-rich Low_complexity Low_complexity 1 99 0 5 1221 21 36 0 0 chr3 83429806 83429834 -76169949 + AT_rich Low_complexity Low_complexity 1 28 0 5 1221 1938 200 14 11 chr3 83430651 83431020 -76168763 + MTC LTR MaLR 1 370 -4 5 1221 202 135 27 0 chr3 83431177 83431214 -76168569 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 5 1221 1121 179 258 27 chr3 83432525 83432823 -76166960 + ORR1B2 LTR MaLR 1 367 0 5 1221 213 158 0 26 chr3 83432841 83432880 -76166903 + GA-rich Low_complexity Low_complexity 2 39 0 5 1221 276 30 0 0 chr3 83432881 83432914 -76166869 + (GA)n Simple_repeat Simple_repeat 2 34 0 5 1221 202 228 35 0 chr3 83433507 83433564 -76166219 + GA-rich Low_complexity Low_complexity 2 60 0 5 1221 249 33 0 0 chr3 83433566 83433596 -76166187 + (GGGGA)n Simple_repeat Simple_repeat 3 32 0 5 1221 565 226 204 52 chr3 83433613 83434096 -76165687 + RLTR18B LTR ERVK 3 541 -75 5 1221 204 158 0 0 chr3 83434221 83434259 -76165524 + (CA)n Simple_repeat Simple_repeat 1 38 0 5 1221 2501 48 93 0 chr3 83435510 83435865 -76163918 - RLTR10 LTR ERVK -2 388 1 5 1221 197 33 0 32 chr3 83436474 83436505 -76163278 + (CA)n Simple_repeat Simple_repeat 1 30 0 5 1221 250 319 65 22 chr3 83437329 83437467 -76162316 - MIR SINE MIR -105 157 14 5 1221 284 260 0 14 chr3 83437758 83437832 -76161951 - MIRc SINE MIR -97 171 99 5 1221 1120 177 13 30 chr3 83438563 83438796 -76160987 - 7SK RNA RNA -100 231 3 5 1221 10238 140 21 103 chr3 83438796 83439413 -76160370 + Lx3C LINE L1 3859 4477 -2499 5 1221 716 151 46 229 chr3 83439413 83439697 -76160086 + RLTR31_Mm LTR ERVK 114 345 -216 5 1221 10238 140 21 103 chr3 83439697 83442184 -76157599 + Lx3C LINE L1 4478 6975 -1 5 1221 342 0 0 0 chr3 83442379 83442417 -76157366 + (TAAA)n Simple_repeat Simple_repeat 2 39 0 5 1221 1055 93 55 18 chr3 83445114 83445278 -76154505 + Lx3_Mus LINE L1 6838 7007 -2 5 1221 443 302 178 0 chr3 83445432 83445561 -76154222 + RSINE1 SINE B4 12 163 -2 5 1221 330 26 0 0 chr3 83445577 83445616 -76154167 + (TATG)n Simple_repeat Simple_repeat 2 40 0 5 1221 2037 157 72 53 chr3 83445789 83446165 -76153618 + ORR1C2 LTR MaLR 1 383 -1 5 1221 1053 218 39 0 chr3 83446487 83446693 -76153090 + B3 SINE B2 2 215 -1 5 1221 536 264 51 47 chr3 83446773 83446988 -76152795 + L1_Mur3 LINE L1 614 829 -6899 5 1221 12851 200 44 92 chr3 83447354 83448132 -76151651 + L1_Mur3 LINE L1 844 1634 -4246 5 1221 2835 65 102 5 chr3 83448132 83448516 -76151267 - BGLII LTR ERVK 0 421 1 5 1221 12851 177 40 146 chr3 83448516 83450142 -76149641 + L1_Mur3 LINE L1 1635 3248 -2632 5 1221 1959 45 0 0 chr3 83450142 83450366 -76149417 + L1Md_T LINE L1 6359 6582 0 5 1221 12851 177 40 146 chr3 83450366 83450478 -76149305 + L1_Mur3 LINE L1 3249 3354 -2526 5 1221 1096 282 16 34 chr3 83450478 83450801 -76148982 + ORR1D2 LTR MaLR 3 319 -51 5 1221 12851 177 40 146 chr3 83450801 83452284 -76147499 + L1_Mur3 LINE L1 3355 4763 -1117 5 1221 4611 107 39 1 chr3 83452280 83452945 -76146838 - L1_Mus1 LINE L1 -232 5651 4962 5 1221 4594 50 4 0 chr3 83452933 83453491 -76146292 + L1_Mus1 LINE L1 5654 6213 -354 5 1221 347 189 79 59 chr3 83453489 83453590 -76146193 + L1_Mur3 LINE L1 4820 4922 -958 5 1221 2387 222 125 29 chr3 83453591 83454255 -76145528 - Lx7 LINE L1 -1207 6489 5762 5 1221 3998 231 112 24 chr3 83454289 83455141 -76144642 + Lx7 LINE L1 6535 7432 -264 5 1221 585 28 0 0 chr3 83455141 83455212 -76144571 + (TG)n Simple_repeat Simple_repeat 1 71 0 5 1221 3998 231 112 24 chr3 83455212 83455425 -76144358 + Lx7 LINE L1 7433 7694 -2 5 1221 410 266 134 30 chr3 83455925 83456101 -76143682 - MLT1A LTR MaLR -18 390 188 5 1221 7056 75 14 1 chr3 83456329 83457243 -76142540 - L1Md_F2 LINE L1 -1 6581 5656 5 1221 2290 71 65 3 chr3 83457242 83457567 -76142216 + L1_Mm LINE L1 2827 3171 -2712 5 1221 501 254 35 14 chr3 83457586 83457730 -76142053 - MLT1A LTR MaLR -219 155 9 5 1221 223 264 0 0 chr3 83458821 83458874 -76140909 - PB1D7 SINE Alu -41 79 27 5 1221 794 229 41 18 chr3 83458918 83459087 -76140696 - B3 SINE B2 0 216 44 5 1221 354 267 22 109 chr3 83459728 83459966 -76139817 + L1VL1 LINE L1 1 393 -6029 5 1221 1662 183 28 22 chr3 83459974 83460331 -76139452 + L1Md_F LINE L1 750 1108 -5411 5 1221 2556 108 22 27 chr3 83460330 83460912 -76138871 + L1VL1 LINE L1 857 1397 -2301 5 1221 17834 91 12 3 chr3 83460911 83464102 -76135681 + L1_Mus1 LINE L1 3363 6567 0 5 1221 564 163 11 11 chr3 83464218 83464311 -76135472 + B3 SINE B2 6 98 -118 5 1221 1176 165 38 5 chr3 83464316 83464529 -76135254 + URR1A DNA MER1_type 1 220 -6 5 1221 463 252 37 0 chr3 83464539 83464646 -76135137 + B3 SINE B2 106 216 0 5 1221 30 27 0 0 chr3 83464736 83464773 -76135010 + AT_rich Low_complexity Low_complexity 1 37 0 5 1221 564 140 0 0 chr3 83465137 83465230 -76134553 + (TCCC)n Simple_repeat Simple_repeat 4 96 0 5 1221 192 77 0 0 chr3 83465872 83465898 -76133885 + (TTTC)n Simple_repeat Simple_repeat 2 27 0 5 1221 363 23 0 0 chr3 83468781 83468825 -76130958 + (TG)n Simple_repeat Simple_repeat 2 45 0 5 1221 743 258 0 85 chr3 83468842 83469041 -76130742 + B3A SINE B2 1 182 -16 5 1221 740 286 111 15 chr3 83470951 83471221 -76128562 - MER82 DNA MER2_type -1 652 357 5 1221 1001 289 56 51 chr3 83471275 83471650 -76128133 - MTEa LTR MaLR 0 379 3 5 1221 541 256 134 11 chr3 83471664 83471850 -76127933 - MER82 DNA MER2_type -370 283 75 5 1221 713 70 10 0 chr3 83472201 83472301 -76127482 + (GA)n Simple_repeat Simple_repeat 2 102 0 5 1221 2664 336 33 10 chr3 83472315 83473310 -76126473 - Lx8 LINE L1 -211 7262 6245 5 1221 1348 276 48 6 chr3 83473362 83473716 -76126067 - MTD LTR MaLR -47 372 4 5 1221 423 0 0 0 chr3 83473735 83473782 -76126001 + (GA)n Simple_repeat Simple_repeat 2 48 0 6 1221 234 62 0 0 chr3 83473783 83473815 -76125968 + (TATATG)n Simple_repeat Simple_repeat 5 36 0 6 1221 1104 247 10 39 chr3 83473824 83474108 -76125675 - L1_Rod LINE L1 -252 5628 5322 6 1221 4593 74 2 9 chr3 83474108 83474691 -76125092 - L1Md_F2 LINE L1 -13 6569 5991 6 1221 1104 259 18 56 chr3 83474691 83474787 -76124996 - L1_Rod LINE L1 -534 5346 5265 6 1221 226 299 39 0 chr3 83474779 83474856 -76124927 - L1M2 LINE L1 -2460 3683 3604 6 1221 5854 248 42 75 chr3 83474879 83474909 -76124874 - L1_Rod LINE L1 -2243 3604 3576 6 1221 1096 112 6 11 chr3 83474909 83475090 -76124693 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 6 1221 5854 248 42 75 chr3 83475090 83476451 -76123332 - L1_Rod LINE L1 -2272 3575 2244 6 1221 1401 77 33 0 chr3 83476451 83476634 -76123149 - L1Md_F2 LINE L1 -6 6576 6388 6 1221 5854 248 42 75 chr3 83476634 83476714 -76123069 - L1_Rod LINE L1 -3604 2243 2180 6 1221 180 0 0 0 chr3 83476714 83476734 -76123049 + (CAA)n Simple_repeat Simple_repeat 2 21 0 6 1221 5854 248 42 75 chr3 83476734 83477566 -76122217 - L1_Rod LINE L1 -3668 2179 1374 6 1221 506 272 103 5 chr3 83477565 83477750 -76122033 - L1_Rod LINE L1 -6508 1100 898 6 1221 228 306 92 0 chr3 83478143 83478241 -76121542 + MIRc SINE MIR 54 160 -108 6 1221 6504 37 3 0 chr3 83478422 83479152 -76120631 + L1Md_T LINE L1 5850 6581 -1 6 1221 442 260 0 19 chr3 83479243 83479349 -76120434 + PB1D10 SINE Alu 7 110 -7 6 1221 619 335 0 0 chr3 83479360 83479521 -76120262 + RSINE1 SINE B4 3 163 -2 6 1221 542 276 69 30 chr3 83479557 83479587 -76120196 + L1MA5 LINE L1 6022 6055 -242 6 1221 403 268 0 0 chr3 83479587 83479669 -76120114 + ID4_ SINE ID 2 83 0 6 1221 822 249 61 4 chr3 83479669 83479900 -76119883 + L1MA5 LINE L1 6053 6295 -5 6 1221 428 183 12 0 chr3 83479916 83479998 -76119785 + L1MA5 LINE L1 6195 6277 -23 6 1221 297 271 32 27 chr3 83481272 83481383 -76118400 + L2a LINE L2 3269 3422 -4 6 1221 185 336 62 18 chr3 83482450 83482562 -76117221 - L2c LINE L2 -8 3379 3263 6 1221 321 276 0 0 chr3 83482577 83482700 -76117083 + (CA)n Simple_repeat Simple_repeat 1 123 0 6 1221 3769 70 11 17 chr3 83483194 83483672 -76116111 + MT2C_Mm LTR ERVL 1 475 0 6 1221 229 344 31 10 chr3 83483963 83484060 -76115723 + RMER12 LTR ERVK 748 846 -476 6 1221 325 208 0 53 chr3 83484062 83484194 -76115589 + (TATG)n Simple_repeat Simple_repeat 4 128 0 6 1221 343 259 14 7 chr3 83484220 83484364 -76115419 + (TATG)n Simple_repeat Simple_repeat 4 148 0 6 1221 213 308 0 0 chr3 83487375 83487427 -76112356 - B1F2 SINE Alu -89 60 9 6 1221 1312 54 0 0 chr3 83487459 83487606 -76112177 - B1_Mus2 SINE Alu 0 147 1 6 1221 978 202 63 10 chr3 83488773 83488922 -76110861 + B3 SINE B2 1 153 -63 6 1221 443 18 18 0 chr3 83488922 83488978 -76110805 + (CA)n Simple_repeat Simple_repeat 1 57 0 6 1221 3373 46 5 5 chr3 83488978 83489374 -76110409 - MTA_Mm LTR MaLR 0 396 1 6 1221 978 202 63 10 chr3 83489374 83489428 -76110355 + B3 SINE B2 154 215 -1 6 1221 5461 78 3 15 chr3 83489582 83490321 -76109462 - L1_Mur1 LINE L1 -254 5632 4903 6 1221 1862 110 22 4 chr3 83490321 83490595 -76109188 + Lx3_Mus LINE L1 6715 6993 -16 6 1221 324 70 0 0 chr3 83490865 83490908 -76108875 + (T)n Simple_repeat Simple_repeat 1 43 0 6 1221 227 145 121 52 chr3 83490955 83491013 -76108770 + RLTR25B LTR ERVK 448 509 -519 6 1221 670 25 0 0 chr3 83490965 83491044 -76108739 + B1_Mm SINE Alu 57 135 -12 6 1221 207 0 0 0 chr3 83491257 83491280 -76108503 + (TTAA)n Simple_repeat Simple_repeat 4 26 0 6 1221 306 0 0 0 chr3 83491608 83491642 -76108141 + (A)n Simple_repeat Simple_repeat 1 34 0 6 1221 336 77 0 0 chr3 83491931 83491983 -76107800 + (A)n Simple_repeat Simple_repeat 1 52 0 6 1221 489 171 8 17 chr3 83492082 83492201 -76107582 + GA-rich Low_complexity Low_complexity 3 120 0 6 1222 201 143 0 0 chr3 83493417 83493452 -76106331 + (C)n Simple_repeat Simple_repeat 1 35 0 6 1222 450 0 0 0 chr3 83493846 83493896 -76105887 + (TC)n Simple_repeat Simple_repeat 2 51 0 6 1222 1807 238 124 35 chr3 83493897 83494501 -76105282 - Lx7 LINE L1 -4 7692 7035 6 1222 485 269 26 46 chr3 83494706 83494858 -76104925 + B1F SINE Alu 1 149 0 6 1222 201 195 0 0 chr3 83494898 83494939 -76104844 + GA-rich Low_complexity Low_complexity 5 45 0 6 1222 342 314 69 25 chr3 83495031 83495191 -76104592 - MER3 DNA MER1_type -7 202 36 6 1222 823 204 155 0 chr3 83495398 83495579 -76104204 + ID_B1 SINE B4 3 211 -13 6 1222 1244 61 24 0 chr3 83496233 83496398 -76103385 + B2_Mm2 SINE B2 13 181 -14 6 1222 266 295 145 88 chr3 83496746 83496995 -76102788 + B4 SINE B4 2 264 -28 6 1222 233 290 16 0 chr3 83497008 83497070 -76102713 + (TG)n Simple_repeat Simple_repeat 1 63 0 6 1222 582 41 0 0 chr3 83497535 83497608 -76102175 + (TTCTC)n Simple_repeat Simple_repeat 2 74 0 6 1222 1232 114 109 43 chr3 83499199 83499410 -76100373 + URR1A DNA MER1_type 2 226 0 6 1222 1231 48 0 0 chr3 83500099 83500244 -76099539 + B1_Mus2 SINE Alu 1 145 -2 1 1222 5966 41 0 0 chr3 83500307 83501011 -76098772 + L1Md_F2 LINE L1 5879 6582 0 2 1222 1979 150 23 16 chr3 83501484 83501872 -76097911 - MTB_Mm LTR MaLR -30 377 1 3 1222 1182 292 89 11 chr3 83502860 83503334 -76096449 - ERVL-E-int LTR ERVL -603 4882 4297 4 1222 887 356 51 10 chr3 83503328 83503819 -76095964 - ERVL-E-int LTR ERVL -1375 4339 3829 4 1222 226 370 32 19 chr3 83503976 83504133 -76095650 - MLT1N2 LTR MaLR -29 533 375 5 1222 685 209 42 18 chr3 83505128 83505294 -76094489 + B3 SINE B2 37 206 -10 6 1222 28 0 0 0 chr3 83505296 83505324 -76094459 + AT_rich Low_complexity Low_complexity 1 28 0 7 1222 789 246 14 58 chr3 83505401 83505608 -76094175 + B3A SINE B2 1 198 0 8 1222 415 269 100 0 chr3 83505683 83505843 -76093940 - Lx8 LINE L1 -373 7100 6925 9 1222 270 244 39 0 chr3 83505853 83505931 -76093852 - PB1D9 SINE Alu -3 117 37 1 1222 978 19 0 0 chr3 83506173 83506280 -76093503 + U6 snRNA snRNA 1 107 0 1 1222 6957 57 0 1 chr3 83506280 83507129 -76092654 + L1Md_F2 LINE L1 4739 5586 -297 1 1222 8348 40 1 2 chr3 83507129 83508142 -76091641 + L1Md_F2 LINE L1 5587 6582 0 1 1222 8348 40 1 2 chr3 83508142 83508156 -76091627 + L1Md_F2 LINE L1 6561 6573 -9 1 1222 444 240 52 75 chr3 83508636 83508848 -76090935 - MLT2C2 LTR ERVL -174 290 84 1 1222 251 338 56 28 chr3 83509209 83509352 -76090431 - ORR1E LTR MaLR -209 150 4 1 1222 226 340 126 0 chr3 83509454 83509557 -76090226 + Tigger5 DNA MER2_type 2291 2406 0 1 1222 553 245 13 44 chr3 83509611 83509769 -76090014 + RSINE1 SINE B4 13 165 0 1 1222 710 147 8 0 chr3 83509812 83509941 -76089842 + (TAGA)n Simple_repeat Simple_repeat 3 132 0 1 1222 854 154 6 6 chr3 83510187 83510344 -76089439 - B2_Mm2 SINE B2 -19 176 20 1 1222 253 282 153 0 chr3 83510869 83510993 -76088790 - LTR50 LTR ERVL -567 228 86 1 1222 1092 83 14 0 chr3 83511631 83511775 -76088008 + B1_Mus2 SINE Alu 2 147 0 2 1222 269 0 56 0 chr3 83512296 83512332 -76087451 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 2 1222 489 288 79 24 chr3 83512632 83512796 -76086987 - Lx8 LINE L1 -169 7304 7132 2 1222 250 132 19 19 chr3 83512800 83512854 -76086929 + Charlie8 DNA MER1_type 80 133 -2295 2 1222 191 88 29 0 chr3 83512873 83512907 -76086876 + (TTTTG)n Simple_repeat Simple_repeat 3 37 0 2 1222 228 314 83 28 chr3 83512907 83513015 -76086768 + Charlie8 DNA MER1_type 154 267 -2161 2 1222 23 0 0 0 chr3 83513236 83513259 -76086524 + GC_rich Low_complexity Low_complexity 1 23 0 2 1222 297 0 0 0 chr3 83514411 83514444 -76085339 + (TA)n Simple_repeat Simple_repeat 1 33 0 2 1222 1027 103 14 0 chr3 83515749 83515894 -76083889 - B1_Mus1 SINE Alu 0 148 2 2 1222 402 21 0 0 chr3 83515972 83516019 -76083764 + (CA)n Simple_repeat Simple_repeat 2 48 0 2 1222 288 304 0 0 chr3 83516129 83516208 -76083575 - MER2 DNA MER2_type -60 285 207 2 1222 352 275 239 0 chr3 83516224 83516366 -76083417 - MER2 DNA MER2_type -164 181 6 2 1222 336 64 0 0 chr3 83516387 83516434 -76083349 + (CTCA)n Simple_repeat Simple_repeat 4 50 0 3 1222 1195 137 113 17 chr3 83517930 83518168 -76081615 - MTD LTR MaLR -14 405 145 3 1222 746 297 62 111 chr3 83518699 83518728 -76081055 + L1MB8 LINE L1 5477 5506 -672 3 1222 1091 236 103 40 chr3 83518728 83519076 -76080707 - ORR1D2 LTR MaLR 0 370 1 3 1222 746 297 62 111 chr3 83519076 83519784 -76079999 + L1MB8 LINE L1 5507 6178 0 3 1222 231 103 0 0 chr3 83519788 83519827 -76079956 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 3 1222 1335 144 98 70 chr3 83520104 83520491 -76079292 - RMER17C LTR ERVK -12 398 1 3 1222 273 244 259 0 chr3 83520499 83520634 -76079149 + L1MA5A LINE L1 5852 6021 -276 3 1222 393 75 0 0 chr3 83521121 83521174 -76078609 + (CA)n Simple_repeat Simple_repeat 2 54 0 3 1222 267 271 0 0 chr3 83522386 83522456 -76077327 - Lx8 LINE L1 -5 7468 7399 3 1222 584 295 24 68 chr3 83522786 83522993 -76076790 + B3A SINE B2 1 198 0 3 1222 929 166 9 0 chr3 83523077 83523301 -76076482 + GA-rich Low_complexity Low_complexity 1 226 0 4 1222 433 284 15 7 chr3 83523377 83523512 -76076271 - MER5B DNA MER1_type -42 136 1 4 1222 630 153 0 0 chr3 83524599 83524710 -76075073 + ORR1D1 LTR MaLR 1 111 -263 4 1222 676 147 93 53 chr3 83524711 83524862 -76074921 + ORR1D1 LTR MaLR 218 374 0 4 1222 335 326 30 15 chr3 83525194 83525325 -76074458 - MTEb LTR MaLR 0 379 247 4 1222 657 306 77 54 chr3 83525389 83526032 -76073751 - MTEb-int LTR MaLR -890 690 1 4 1222 554 302 97 48 chr3 83526032 83526342 -76073441 - MTEb LTR MaLR 0 379 55 4 1222 889 59 0 0 chr3 83527480 83527598 -76072185 - B1_Mm SINE Alu 0 147 30 4 1222 292 284 0 39 chr3 83527657 83527734 -76072049 + ORR1E LTR MaLR 1 74 -285 4 1222 1477 230 78 0 chr3 83528192 83528540 -76071243 - MTEa LTR MaLR -2 377 3 4 1222 1673 188 136 0 chr3 83528641 83529002 -76070781 - MTD LTR MaLR -7 412 3 4 1222 396 230 15 7 chr3 83529039 83529175 -76070608 + (TATATG)n Simple_repeat Simple_repeat 2 138 0 4 1222 981 123 35 79 chr3 83529677 83529880 -76069903 + B2_Mm2 SINE B2 2 195 0 5 1222 48 60 0 0 chr3 83529964 83530047 -76069736 + AT_rich Low_complexity Low_complexity 1 83 0 5 1222 293 24 0 0 chr3 83530110 83530152 -76069631 - L1Md_T LINE L1 0 6582 6541 5 1222 663 261 26 36 chr3 83531510 83531705 -76068078 + B3A SINE B2 1 193 -5 5 1222 539 74 0 12 chr3 83531940 83532022 -76067761 + (TG)n Simple_repeat Simple_repeat 2 82 0 5 1222 697 266 98 124 chr3 83533357 83533735 -76066048 - MTE2a LTR MaLR -8 371 4 5 1222 400 249 279 0 chr3 83534546 83534711 -76065072 + ID_B1 SINE B4 7 217 -7 5 1222 499 246 0 50 chr3 83535976 83536096 -76063687 + RSINE1 SINE B4 42 155 -10 5 1222 351 0 0 0 chr3 83536106 83536145 -76063638 + (CA)n Simple_repeat Simple_repeat 1 39 0 5 1222 451 321 42 49 chr3 83536577 83536865 -76062918 - B4A SINE B4 -6 286 1 5 1222 485 32 16 0 chr3 83537639 83537702 -76062081 + (TG)n Simple_repeat Simple_repeat 2 65 0 6 1222 794 288 48 31 chr3 83539588 83539817 -76059966 + B4 SINE B4 1 233 -59 6 1222 910 26 0 0 chr3 83540467 83540583 -76059200 + B1_Mm SINE Alu 25 140 -7 6 1222 441 255 42 78 chr3 83541242 83541408 -76058375 + MER20 DNA MER1_type 1 160 -59 6 1222 816 226 19 34 chr3 83541590 83541796 -76057987 + B3 SINE B2 5 207 -9 6 1222 727 339 24 27 chr3 83542191 83542564 -76057219 + Lx8 LINE L1 6842 7213 -260 6 1222 243 0 0 0 chr3 83542564 83542591 -76057192 + (A)n Simple_repeat Simple_repeat 1 27 0 6 1222 438 290 160 61 chr3 83544730 83545024 -76054759 - MLT1A1 LTR MaLR -42 323 1 6 1222 1054 198 273 8 chr3 83545729 83546029 -76053754 + ORR1C2 LTR MaLR 1 416 -5 6 1222 261 0 0 0 chr3 83547022 83547051 -76052732 + (CA)n Simple_repeat Simple_repeat 1 29 0 6 1222 369 284 107 74 chr3 83547194 83547532 -76052251 + L1M5 LINE L1 4958 5306 -840 7 1222 1046 50 0 0 chr3 83547567 83547708 -76052075 + B1_Mus1 SINE Alu 8 148 0 7 1222 275 71 24 0 chr3 83548131 83548173 -76051610 + (TTTC)n Simple_repeat Simple_repeat 2 44 0 7 1222 2896 103 87 34 chr3 83548187 83548657 -76051126 - Lx4A LINE L1 -2 7056 6562 7 1222 757 141 62 0 chr3 83548662 83548790 -76050993 - B1_Mur2 SINE Alu -13 136 1 7 1222 441 0 0 0 chr3 83549591 83549640 -76050143 + (CA)n Simple_repeat Simple_repeat 1 49 0 7 1222 234 282 13 0 chr3 83549680 83549758 -76050025 - ORR1D2 LTR MaLR -6 364 286 7 1222 357 24 0 0 chr3 83549771 83549813 -76049970 + (TTG)n Simple_repeat Simple_repeat 3 44 0 7 1222 1882 218 37 0 chr3 83549848 83550229 -76049554 + MTD LTR MaLR 25 419 0 7 1222 870 226 154 4 chr3 83550229 83550481 -76049302 - ORR1D2 LTR MaLR -80 290 1 7 1222 2231 128 19 0 chr3 83550543 83550863 -76048920 - ORR1A3 LTR MaLR 0 326 1 7 1222 376 257 0 32 chr3 83550922 83551175 -76048608 + (TG)n Simple_repeat Simple_repeat 1 244 0 8 1222 311 0 26 0 chr3 83551595 83551634 -76048149 + (CA)n Simple_repeat Simple_repeat 1 40 0 8 1222 356 59 20 0 chr3 83553613 83553664 -76046119 + (CA)n Simple_repeat Simple_repeat 1 52 0 8 1222 2383 138 5 37 chr3 83554631 83555038 -76044745 - ORR1B1 LTR MaLR 0 394 1 8 1222 493 301 61 7 chr3 83555058 83555205 -76044578 + RSINE1 SINE B4 2 156 -9 8 1222 686 262 35 12 chr3 83555278 83555448 -76044335 + RLTR18 LTR ERVK 5 178 -334 8 1222 808 240 56 97 chr3 83555610 83555929 -76043854 + RLTR18 LTR ERVK 286 591 -25 8 1222 583 252 68 25 chr3 83556540 83556703 -76043080 + Charlie10a DNA MER1_type 82 251 -29 8 1222 300 280 304 33 chr3 83557342 83557622 -76042161 + MLT1C LTR MaLR 35 390 0 8 1222 419 330 52 64 chr3 83558430 83558679 -76041104 + MTEa LTR MaLR 3 248 -131 8 1222 321 26 0 0 chr3 83558695 83558733 -76041050 + (TA)n Simple_repeat Simple_repeat 1 38 0 8 1222 279 0 0 0 chr3 83558733 83558763 -76041020 + (CA)n Simple_repeat Simple_repeat 2 32 0 9 1222 253 357 76 7 chr3 83560178 83560322 -76039461 + MLT1I LTR MaLR 16 169 -242 9 1222 1059 175 10 12 chr3 83560673 83560869 -76038914 + ORR1D1 LTR MaLR 1 172 -202 9 1222 670 120 35 44 chr3 83560863 83560976 -76038807 + B1_Mur2 SINE Alu 33 144 -5 9 1222 638 207 213 0 chr3 83560972 83561160 -76038623 + ORR1D1 LTR MaLR 143 370 -4 9 1222 25 31 0 0 chr3 83561688 83561720 -76038063 + AT_rich Low_complexity Low_complexity 1 32 0 9 1222 396 0 0 0 chr3 83562092 83562136 -76037647 + (TG)n Simple_repeat Simple_repeat 1 44 0 9 1222 886 307 30 19 chr3 83562141 83562403 -76037380 - B4A SINE B4 0 292 28 9 1222 189 121 0 0 chr3 83565170 83565203 -76034580 + (GA)n Simple_repeat Simple_repeat 2 34 0 9 1222 541 265 29 30 chr3 83565353 83565503 -76034280 - B1F SINE Alu -1 148 1 9 1222 631 280 22 16 chr3 83565522 83565707 -76034076 - B3A SINE B2 -4 194 9 9 1222 249 209 19 0 chr3 83566671 83566730 -76033053 + MIR SINE MIR 74 133 -75 1 1222 609 293 7 0 chr3 83566761 83566901 -76032882 + RSINE1 SINE B4 2 142 -23 1 1222 261 0 0 0 chr3 83572395 83572424 -76027359 + (CA)n Simple_repeat Simple_repeat 1 29 0 1 1222 400 18 17 17 chr3 83573617 83573675 -76026108 + (GTTTG)n Simple_repeat Simple_repeat 2 59 0 1 1222 219 69 0 0 chr3 83573875 83573904 -76025879 + (GA)n Simple_repeat Simple_repeat 1 29 0 1 1222 465 133 0 0 chr3 83574386 83574461 -76025322 + (CA)n Simple_repeat Simple_repeat 2 76 0 1 1222 279 0 0 0 chr3 83574951 83574982 -76024801 + (CA)n Simple_repeat Simple_repeat 1 31 0 1 1222 261 0 0 0 chr3 83578594 83578623 -76021160 + (A)n Simple_repeat Simple_repeat 1 29 0 1 1222 618 289 194 16 chr3 83578719 83579029 -76020754 - MLT1A0 LTR MaLR 0 365 1 1 1222 587 299 8 145 chr3 83579445 83579680 -76020103 - B3A SINE B2 -13 203 1 1 1222 1484 252 70 62 chr3 83579990 83580489 -76019294 - RLTR18B LTR ERVK -2 510 8 1 1222 406 213 74 11 chr3 83580696 83580791 -76018992 + ID_B1 SINE B4 110 210 -14 1 1222 1146 72 0 0 chr3 83582287 83582426 -76017357 - B1_Mus1 SINE Alu -8 140 2 1 1222 392 307 122 25 chr3 83582458 83582697 -76017086 + MTEa LTR MaLR 172 419 0 1 1222 225 118 58 19 chr3 83582697 83582745 -76017038 + LTR55 LTR ERV 246 295 -253 1 1222 232 283 175 6 chr3 83582955 83583115 -76016668 + L1MB7 LINE L1 2698 2884 -3256 1 1222 370 271 206 21 chr3 83583192 83583478 -76016305 + L1MB7 LINE L1 3024 3362 -2784 1 1222 651 303 131 84 chr3 83583588 83584631 -76015152 + L1MB7 LINE L1 4187 5278 -868 1 1222 1394 281 149 29 chr3 83584662 83585414 -76014369 + L1MB7 LINE L1 5357 6184 0 1 1222 226 215 55 110 chr3 83585717 83585790 -76013993 - MLT1K LTR MaLR -177 418 350 1 1222 629 185 6 25 chr3 83586424 83586585 -76013198 + CT-rich Low_complexity Low_complexity 5 162 0 1 1222 922 303 39 19 chr3 83586585 83586601 -76013182 + Tigger7 DNA MER2_type 7 20 -2471 1 1222 279 54 0 0 chr3 83586601 83586638 -76013145 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 1222 922 303 39 19 chr3 83586638 83586880 -76012903 + Tigger7 DNA MER2_type 21 270 -2221 1 1222 313 309 24 0 chr3 83586896 83586980 -76012803 + Tigger7 DNA MER2_type 2405 2490 -1 1 1222 343 156 31 0 chr3 83587245 83587309 -76012474 + ID SINE ID 6 71 -153 1 1222 541 261 8 8 chr3 83588323 83588454 -76011329 - Tigger16b DNA Tigger -1 336 206 1 1222 300 53 0 0 chr3 83588475 83588513 -76011270 + (CA)n Simple_repeat Simple_repeat 1 38 0 1 1222 203 88 29 0 chr3 83589549 83589583 -76010200 + (TTG)n Simple_repeat Simple_repeat 2 36 0 1 1222 372 264 31 39 chr3 83589654 83589784 -76009999 - ID_B1 SINE B4 -2 222 94 1 1222 528 59 0 0 chr3 83589885 83589953 -76009830 + (TTTA)n Simple_repeat Simple_repeat 2 69 0 1 1222 534 225 16 8 chr3 83589982 83590103 -76009680 - RSINE1 SINE B4 -42 123 2 1 1222 314 260 37 46 chr3 83590571 83590680 -76009103 - MLT1A1 LTR MaLR -1 407 300 1 1222 1526 134 65 240 chr3 83590779 83591241 -76008542 - ORR1C2 LTR MaLR -3 381 1 1 1222 220 304 14 28 chr3 83592052 83592123 -76007660 + MIR SINE MIR 13 82 -180 1 1222 320 286 27 62 chr3 83592448 83592560 -76007223 + MER5A DNA MER1_type 19 126 -63 1 1222 216 253 24 30 chr3 83593174 83593341 -76006442 + CT-rich Low_complexity Low_complexity 4 169 0 1 1222 206 376 0 0 chr3 83593353 83593454 -76006329 + C-rich Low_complexity Low_complexity 3 103 0 1 1222 230 312 152 0 chr3 83594138 83594263 -76005520 - MER5A DNA MER1_type -12 177 34 1 1222 249 33 0 0 chr3 83594639 83594669 -76005114 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 1 1222 1004 69 77 0 chr3 83594669 83594799 -76004984 - B1_Mus1 SINE Alu -7 141 2 1 1222 369 361 14 7 chr3 83594883 83595028 -76004755 + L2a LINE L2 3279 3424 -2 1 1222 888 275 140 7 chr3 83595761 83596032 -76003751 + MTE2a LTR MaLR 30 336 -43 1 1222 273 324 39 0 chr3 83597649 83597751 -76002032 - HAL1 LINE L1 -1807 700 595 1 1222 398 310 91 54 chr3 83598601 83598898 -76000885 - L1M5 LINE L1 -1066 5080 4773 1 1222 966 274 49 37 chr3 83599449 83599794 -75999989 - ORR1D1 LTR MaLR -31 339 1 1 1222 786 193 12 8 chr3 83602231 83602484 -75997299 + CT-rich Low_complexity Low_complexity 1 254 0 1 1222 211 258 15 61 chr3 83602492 83602558 -75997225 - MER5B DNA MER1_type 0 178 116 1 1222 512 288 0 0 chr3 83602682 83602800 -75996983 - MLT1B LTR MaLR -3 387 270 1 1222 286 280 26 13 chr3 83602911 83602987 -75996796 - MER5B DNA MER1_type -88 90 14 1 1222 761 174 103 6 chr3 83603002 83603158 -75996625 - URR1A DNA MER1_type 0 226 56 1 1222 219 275 29 0 chr3 83604614 83604683 -75995100 - MER5A DNA MER1_type -24 165 95 1 1222 22 0 0 0 chr3 83605057 83605079 -75994704 + AT_rich Low_complexity Low_complexity 1 22 0 1 1222 395 203 108 0 chr3 83605090 83605164 -75994619 + Lx8 LINE L1 7246 7327 -146 1 1222 654 46 0 33 chr3 83605345 83605356 -75994427 - B1_Mus2 SINE Alu -1 146 138 1 1222 207 0 0 0 chr3 83605356 83605379 -75994404 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 1 1222 654 46 0 33 chr3 83605379 83605457 -75994326 - B1_Mus2 SINE Alu -10 137 60 1 1222 950 228 35 0 chr3 83605700 83605897 -75993886 - B3 SINE B2 -6 210 7 1 1222 414 0 0 0 chr3 83606722 83606768 -75993015 + (TTA)n Simple_repeat Simple_repeat 3 48 0 1 1222 21 0 0 0 chr3 83607209 83607230 -75992553 + AT_rich Low_complexity Low_complexity 1 21 0 1 1222 362 69 17 0 chr3 83607659 83607717 -75992066 + (TTTG)n Simple_repeat Simple_repeat 2 60 0 1 1222 1135 61 13 13 chr3 83607745 83607894 -75991889 - B1_Mur4 SINE Alu 0 150 2 1 1222 1154 306 98 23 chr3 83608408 83608543 -75991240 + L1MC3 LINE L1 4407 4574 -1572 1 1222 416 35 0 17 chr3 83608543 83608602 -75991181 + (TA)n Simple_repeat Simple_repeat 1 58 0 1 1222 1154 306 98 23 chr3 83608602 83609171 -75990612 + L1MC3 LINE L1 4575 5164 -982 1 1222 615 110 61 52 chr3 83609179 83609294 -75990489 + B2_Mm2 SINE B2 2 117 -78 1 1222 264 59 0 0 chr3 83609328 83609362 -75990421 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 1 1222 403 278 79 19 chr3 83609363 83609510 -75990273 + L1MC3 LINE L1 5171 5316 -830 1 1222 699 218 102 0 chr3 83609511 83609658 -75990125 + B3A SINE B2 1 162 -36 1 1222 288 0 0 0 chr3 83609659 83609691 -75990092 + (CA)n Simple_repeat Simple_repeat 1 32 0 1 1222 569 315 74 30 chr3 83609706 83610073 -75989710 + L1MC3 LINE L1 5305 5687 -2098 1 1222 843 131 0 0 chr3 83610073 83610233 -75989550 + (TG)n Simple_repeat Simple_repeat 2 161 0 1 1222 527 102 11 0 chr3 83610236 83610324 -75989459 + (TAGA)n Simple_repeat Simple_repeat 2 90 0 1 1222 835 308 100 12 chr3 83610325 83610942 -75988841 + L1MC3 LINE L1 5705 6425 -1617 1 1222 299 291 229 8 chr3 83611211 83611230 -75988553 + B1F SINE Alu 3 144 -3 1 1222 309 309 134 0 chr3 83611230 83611327 -75988456 + ID_B1 SINE B4 111 220 -4 1 1222 1105 112 0 18 chr3 83613561 83613725 -75986058 - Lx4A LINE L1 -392 6666 6506 1 1222 2487 131 173 9 chr3 83613824 83614367 -75985416 + Lx4A LINE L1 6427 7058 0 1 1222 764 115 8 0 chr3 83614389 83614511 -75985272 + (GGAA)n Simple_repeat Simple_repeat 3 125 0 1 1222 275 250 92 35 chr3 83615648 83615735 -75984048 - PB1D10 SINE Alu 0 117 26 1 1222 285 182 23 109 chr3 83616652 83616738 -75983045 + B1F SINE Alu 53 150 0 1 1222 562 258 45 6 chr3 83617274 83617453 -75982330 - RCHARR1 DNA MER1_type -33 941 756 1 1222 346 206 0 0 chr3 83617451 83617524 -75982259 - RCHARR1 DNA MER1_type -504 470 398 1 1222 2966 65 44 3 chr3 83618294 83618678 -75981105 + MTB LTR MaLR 1 400 0 1 1222 420 229 271 10 chr3 83619895 83620102 -75979681 + MER33 DNA MER1_type 23 283 -41 1 1222 561 115 0 0 chr3 83621211 83621298 -75978485 + (CA)n Simple_repeat Simple_repeat 2 88 0 1 1222 344 217 30 80 chr3 83621372 83621472 -75978311 + PB1D10 SINE Alu 1 95 -54 1 1222 1273 154 69 30 chr3 83622192 83622454 -75977329 - Lx4B LINE L1 -12 7046 6775 1 1222 1017 310 53 49 chr3 83622561 83622919 -75976864 + MER44B DNA MER2_type 2 375 -175 1 1222 1131 75 0 0 chr3 83622919 83623066 -75976717 - B1_Mus1 SINE Alu 0 148 2 1 1222 1017 310 53 49 chr3 83623066 83623233 -75976550 + MER44B DNA MER2_type 376 529 -21 1 1222 710 262 0 7 chr3 83623755 83623905 -75975878 + RSINE1 SINE B4 3 151 -14 1 152 441 0 0 0 chr3 83623915 83623964 -75975819 + (CA)n Simple_repeat Simple_repeat 1 49 0 1 1223 271 309 0 0 chr3 83624180 83624250 -75975533 + ID2 SINE ID 9 78 -74 1 1223 481 321 38 0 chr3 83625204 83625388 -75974395 + L1MC3 LINE L1 6279 6469 -1316 1 1223 1997 108 39 0 chr3 83625389 83625696 -75974087 - ORR1A2 LTR MaLR -8 319 1 1 1223 1167 268 70 15 chr3 83625735 83626076 -75973707 + L1MC3 LINE L1 6531 6890 -895 1 1223 2435 119 9 0 chr3 83626673 83627016 -75972767 - ORR1A1 LTR MaLR 0 346 1 1 1223 6573 84 22 8 chr3 83627869 83629534 -75970249 + L1VL4 LINE L1 1 1691 -1868 1 1223 7542 88 26 2 chr3 83629533 83630747 -75969036 + L1_Mus4 LINE L1 5392 6630 -6 1 1223 903 87 0 0 chr3 83630767 83630893 -75968890 + (GGAAA)n Simple_repeat Simple_repeat 5 130 0 1 1223 189 0 0 0 chr3 83630953 83630974 -75968809 + (CA)n Simple_repeat Simple_repeat 2 22 0 1 1223 526 346 55 23 chr3 83631092 83631438 -75968345 - ORR1E LTR MaLR 0 359 3 1 1223 1450 54 32 0 chr3 83634199 83634357 -75965426 + B2_Mm1t SINE B2 1 158 -35 1 1223 198 0 0 0 chr3 83634357 83634379 -75965404 + (TAAA)n Simple_repeat Simple_repeat 1 22 0 1 1223 1450 54 32 0 chr3 83634379 83634406 -75965377 + B2_Mm1t SINE B2 159 191 -2 1 1223 588 230 81 7 chr3 83634644 83634793 -75964990 - B3 SINE B2 -56 160 1 1 1223 26 0 0 0 chr3 83634893 83634919 -75964864 + AT_rich Low_complexity Low_complexity 1 26 0 1 1223 1598 47 0 5 chr3 83636506 83636698 -75963085 + B2_Mm1t SINE B2 3 193 0 1 1223 187 322 122 0 chr3 83637032 83637122 -75962661 + L2a LINE L2 3315 3415 -11 1 1223 1521 256 25 16 chr3 83637216 83637581 -75962202 + ORR1D2 LTR MaLR 2 369 -1 1 1223 712 258 46 0 chr3 83637582 83637776 -75962007 - MTE-int LTR MaLR -1377 203 1 1 1223 946 309 128 4 chr3 83637783 83638274 -75961509 - L1M2 LINE L1 -1110 5033 4482 1 1223 297 167 0 0 chr3 83638421 83638475 -75961308 + (TG)n Simple_repeat Simple_repeat 2 55 0 1 1223 250 226 57 30 chr3 83639072 83639156 -75960627 - MIRc SINE MIR -112 164 77 1 1223 1227 55 0 0 chr3 83639476 83639622 -75960161 + B1_Mus2 SINE Alu 1 146 -1 2 1223 222 105 0 0 chr3 83639623 83639661 -75960122 + (A)n Simple_repeat Simple_repeat 1 38 0 2 1223 183 139 0 0 chr3 83642782 83642818 -75956965 + (TC)n Simple_repeat Simple_repeat 1 36 0 2 1223 618 216 9 0 chr3 83643532 83643648 -75956135 - RSINE1 SINE B4 -18 147 31 2 1223 440 219 370 0 chr3 83643668 83643814 -75955969 - B3 SINE B2 -16 200 1 2 1223 437 264 123 10 chr3 83643897 83644092 -75955691 + ID_B1 SINE B4 2 218 -6 2 1223 296 18 52 35 chr3 83644459 83644517 -75955266 + (CAAAA)n Simple_repeat Simple_repeat 2 60 0 2 1223 962 128 233 0 chr3 83646869 83647049 -75952734 - URR1A DNA MER1_type -4 222 1 2 1223 459 0 0 0 chr3 83647063 83647114 -75952669 + (TC)n Simple_repeat Simple_repeat 2 52 0 2 1223 277 261 78 9 chr3 83647152 83647268 -75952515 - LTR48 LTR ERV1 -74 713 590 2 1223 262 221 69 11 chr3 83647365 83647452 -75952331 - LTR48 LTR ERV1 -432 212 121 2 1223 312 234 70 35 chr3 83647836 83647951 -75951832 + PB1D7 SINE Alu 2 120 0 2 1223 226 279 44 0 chr3 83648344 83648412 -75951371 - ID4 SINE ID -9 74 4 2 1223 207 242 7 14 chr3 83648476 83648616 -75951167 + GA-rich Low_complexity Low_complexity 1 138 0 2 1223 282 339 94 31 chr3 83653210 83653257 -75946526 + MER2B DNA MER2_type 13 59 -277 2 1223 243 61 0 0 chr3 83653257 83653290 -75946493 + (TA)n Simple_repeat Simple_repeat 1 33 0 2 1223 282 339 94 31 chr3 83653290 83653370 -75946413 + MER2B DNA MER2_type 60 147 -189 2 1223 414 0 0 0 chr3 83653849 83653895 -75945888 + (CA)n Simple_repeat Simple_repeat 2 47 0 2 1223 470 290 96 39 chr3 83653987 83654217 -75945566 + MER2 DNA MER2_type 1 243 -102 2 1223 24 0 0 0 chr3 83654381 83654405 -75945378 + AT_rich Low_complexity Low_complexity 1 24 0 2 1223 233 175 0 0 chr3 83654534 83654574 -75945209 + PB1D10 SINE Alu 29 68 -49 2 1223 2234 236 47 62 chr3 83655866 83656662 -75943121 + MYSERV16_I-int LTR ERVK 840 1547 -779 2 1223 1011 235 33 11 chr3 83656658 83656929 -75942854 + MYSERV-int LTR ERVK 6269 6545 -5 2 1223 2945 157 33 17 chr3 83656933 83657451 -75942332 + RLTR11A2 LTR ERVK 1 526 -1 2 1223 655 282 6 24 chr3 83658296 83658463 -75941320 - RSINE1 SINE B4 0 165 2 2 1223 1389 217 200 11 chr3 83659556 83660020 -75939763 - RLTR20C LTR ERVK 0 551 1 2 1223 334 336 69 62 chr3 83660579 83660855 -75938928 + Lx8 LINE L1 7171 7448 -25 2 1223 1746 179 89 42 chr3 83661894 83662320 -75937463 - RLTR41 LTR ERV1 0 446 1 2 1223 252 0 0 0 chr3 83663440 83663468 -75936315 + (TG)n Simple_repeat Simple_repeat 2 29 0 2 1223 624 91 0 0 chr3 83663941 83664029 -75935754 + (TA)n Simple_repeat Simple_repeat 2 89 0 2 1223 187 264 240 0 chr3 83664370 83664465 -75935318 + MIRb SINE MIR 44 165 -103 2 1223 657 243 132 40 chr3 83664579 83664875 -75934908 + RMER20B LTR ERVK 90 412 -215 2 1223 2293 57 0 0 chr3 83665379 83665660 -75934123 + L1_Mus1 LINE L1 6287 6567 0 2 1223 21 0 0 0 chr3 83665970 83665991 -75933792 + AT_rich Low_complexity Low_complexity 1 21 0 2 1223 241 179 23 35 chr3 83666255 83666342 -75933441 + CT-rich Low_complexity Low_complexity 1 86 0 2 1223 268 257 83 28 chr3 83666530 83666629 -75933154 + PB1D7 SINE Alu 2 107 -13 2 1223 216 0 0 0 chr3 83666629 83666653 -75933130 + (CAAAA)n Simple_repeat Simple_repeat 1 24 0 2 1223 450 0 0 0 chr3 83667398 83667448 -75932335 + (TG)n Simple_repeat Simple_repeat 2 51 0 2 1223 4047 275 58 73 chr3 83667856 83668090 -75931693 + RMER19B LTR ERVK 1 231 -380 2 1223 414 0 0 0 chr3 83668090 83668136 -75931647 + (TG)n Simple_repeat Simple_repeat 1 46 0 2 1223 4047 188 68 18 chr3 83668136 83668212 -75931571 + RMER19B LTR ERVK 157 234 -668 2 1223 4853 148 62 17 chr3 83668212 83669081 -75930702 + RMER13B LTR ERVK 1 908 0 2 1223 4047 188 68 18 chr3 83669081 83669699 -75930084 + RMER19B LTR ERVK 235 890 -12 2 1223 1073 44 0 14 chr3 83669705 83669843 -75929940 + B1_Mus1 SINE Alu 13 148 0 2 1223 7411 44 2 6 chr3 83669856 83670756 -75929027 - L1Md_T LINE L1 -1 6581 5711 2 1223 2716 232 96 26 chr3 83670774 83671528 -75928255 + RLTR13D1 LTR ERVK 1 806 0 2 1223 436 266 292 9 chr3 83671531 83671747 -75928036 - Tigger5 DNA MER2_type -32 2374 2098 2 1223 647 292 103 32 chr3 83672027 83672412 -75927371 - MLT1D LTR MaLR -6 499 139 2 1223 903 276 146 23 chr3 83672425 83672489 -75927294 - MT2A LTR ERVL -6 527 457 2 1223 2886 22 0 0 chr3 83672489 83672811 -75926972 + RLTRETN_Mm LTR ERVK 1 322 0 2 1223 903 276 146 23 chr3 83672811 83673047 -75926736 - MT2A LTR ERVL -77 456 190 2 1223 1151 257 68 30 chr3 83673051 83673243 -75926540 + MLT1A1 LTR MaLR 25 222 -186 2 1223 994 152 168 25 chr3 83673243 83673439 -75926344 + URR1B DNA MER1_type 1 224 -1 2 1223 1151 257 68 30 chr3 83673439 83673615 -75926168 + MLT1A1 LTR MaLR 223 407 -1 2 1223 263 260 40 40 chr3 83673616 83673692 -75926091 - MLT1D LTR MaLR -551 76 1 2 1223 2215 101 6 66 chr3 83673964 83674314 -75925469 + ORR1A4 LTR MaLR 1 329 0 2 1223 25 51 0 0 chr3 83674713 83674752 -75925031 + AT_rich Low_complexity Low_complexity 1 39 0 2 1223 298 307 139 0 chr3 83674786 83674887 -75924896 - PB1D9 SINE Alu -5 115 1 2 1223 1323 75 32 5 chr3 83674921 83675080 -75924703 + B2_Mm1a SINE B2 1 160 -33 2 1223 207 0 0 0 chr3 83675080 83675103 -75924680 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 2 1223 1323 75 32 5 chr3 83675103 83675130 -75924653 + B2_Mm1a SINE B2 161 192 -1 2 1223 267 54 0 0 chr3 83675153 83675190 -75924593 + (A)n Simple_repeat Simple_repeat 1 37 0 2 1223 1679 154 123 27 chr3 83675461 83675834 -75923949 - RLTR9E LTR ERVK 0 409 1 2 1223 507 53 25 62 chr3 83675834 83675914 -75923869 - ETnERV2-int LTR ERVK -1 7405 7329 2 1223 1790 183 170 9 chr3 83675914 83676376 -75923407 - RLTR13D6 LTR ERVK -365 537 1 2 1223 1707 117 8 4 chr3 83676389 83676638 -75923145 - ETnERV3-int LTR ERVK -30 5778 5529 2 1223 314 158 12 50 chr3 83676638 83676718 -75923065 - ETnERV3-int LTR ERVK -1172 6072 6009 2 1223 4174 188 35 52 chr3 83676805 83678830 -75920953 - ETnERV2-int LTR ERVK -3321 4085 2342 2 1223 1738 181 197 23 chr3 83678846 83679323 -75920460 - ETnERV2-int LTR ERVK -4419 2987 2428 2 1223 1662 140 30 17 chr3 83679314 83679612 -75920171 - ETnERV2-int LTR ERVK -5311 2095 1794 2 1223 1381 178 97 113 chr3 83679684 83680064 -75919719 + ORR1D1 LTR MaLR 1 374 0 2 1223 2733 333 28 13 chr3 83680652 83681685 -75918098 - RodERV21-int LTR ERV1 -102 4889 3841 2 1223 332 336 46 64 chr3 83681703 83681983 -75917800 - RodERV21-int LTR ERV1 -1375 3616 3342 2 1223 553 217 0 56 chr3 83682620 83682781 -75917002 - RodERV21-int LTR ERV1 -2371 2620 2469 2 1223 445 342 81 30 chr3 83682854 83682994 -75916789 - MLT1F2 LTR MaLR -226 334 193 2 1223 5836 83 15 29 chr3 83682994 83683814 -75915969 - RLTR13C2 LTR ERVK 0 808 1 2 1223 445 342 81 30 chr3 83683814 83683971 -75915812 - MLT1F2 LTR MaLR -368 192 22 2 1223 2636 19 109 3 chr3 83684134 83684447 -75915336 + ORR1A0 LTR MaLR 1 346 0 2 1223 2708 54 15 95 chr3 83684491 83684881 -75914902 + RLTR10D LTR ERVK 1 359 0 2 1223 1516 181 184 12 chr3 83685104 83685274 -75914509 - MTD LTR MaLR -1 418 200 2 1223 243 0 0 0 chr3 83685274 83685301 -75914482 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2 1223 1516 181 184 12 chr3 83685301 83685472 -75914311 - MTD LTR MaLR -220 199 20 2 1223 213 206 44 0 chr3 83685488 83685556 -75914227 + (CCAA)n Simple_repeat Simple_repeat 1 71 0 2 1223 337 275 17 84 chr3 83686033 83686152 -75913631 - PB1D7 SINE Alu -1 119 9 2 1223 370 241 144 27 chr3 83686238 83686349 -75913434 - ORR1E LTR MaLR 0 379 256 2 1223 1139 72 0 0 chr3 83686364 83686502 -75913281 + B1_Mus2 SINE Alu 1 138 -9 2 1223 642 307 63 23 chr3 83686548 83686837 -75912946 - ORR1E LTR MaLR -105 254 1 2 1223 1934 268 153 17 chr3 83686837 83687472 -75912311 - ORR1E-int LTR MaLR -51 1529 809 2 1223 4183 46 4 29 chr3 83687941 83688457 -75911326 - RLTR1C LTR ERV1 0 503 1 2 1223 189 107 0 0 chr3 83688541 83688569 -75911214 + (TTA)n Simple_repeat Simple_repeat 2 29 0 2 1223 403 295 72 26 chr3 83688602 83688755 -75911028 - RSINE1 SINE B4 -1 164 5 2 1223 196 396 10 40 chr3 83689287 83689387 -75910396 + MIRb SINE MIR 35 131 -137 2 1223 333 256 0 0 chr3 83689646 83689724 -75910059 - L1MA5 LINE L1 -23 6277 6200 2 1223 361 279 110 64 chr3 83689765 83689983 -75909800 - L1MA6 LINE L1 -20 6280 6053 2 1223 955 67 0 36 chr3 83690067 83690207 -75909576 + L1_Mus1 LINE L1 6433 6567 0 2 1223 233 105 51 34 chr3 83690214 83690273 -75909510 + (TA)n Simple_repeat Simple_repeat 2 61 0 2 1223 422 193 229 20 chr3 83690274 83690427 -75909356 - Lx5 LINE L1 -5 7045 6861 2 1223 316 332 82 69 chr3 83690427 83690660 -75909123 + MLT1F2 LTR MaLR 130 365 -195 2 1223 586 179 8 33 chr3 83690747 83690868 -75908915 + ORR1B2 LTR MaLR 1 118 -249 2 1223 997 90 5 43 chr3 83690960 83691145 -75908638 + (TTCTCC)n Simple_repeat Simple_repeat 3 180 0 2 1223 895 252 128 0 chr3 83691182 83691440 -75908343 + B4A SINE B4 1 291 -1 2 1223 510 195 0 0 chr3 83691625 83691707 -75908076 + ID4 SINE ID 2 83 0 2 1223 1199 252 47 94 chr3 83691760 83692290 -75907493 + RLTR16 LTR ERVK 1 505 0 2 1223 411 254 25 42 chr3 83692996 83693115 -75906668 - PB1D10 SINE Alu 0 117 1 2 1223 199 177 32 0 chr3 83693196 83693258 -75906525 + (TG)n Simple_repeat Simple_repeat 1 64 0 2 1223 400 264 11 11 chr3 83693261 83693349 -75906434 - RSINE1 SINE B4 0 165 78 2 1223 480 261 9 26 chr3 83693522 83693636 -75906147 - RSINE1 SINE B4 -3 162 51 2 1223 347 279 0 12 chr3 83693655 83693735 -75906048 - RSINE1 SINE B4 -85 80 2 2 1223 569 319 126 28 chr3 83694413 83694668 -75905115 - Tigger7 DNA MER2_type -2211 280 1 2 1223 376 292 105 57 chr3 83694762 83695092 -75904691 + MLT1D LTR MaLR 1 367 -138 2 1223 2319 135 38 3 chr3 83695156 83695527 -75904256 - ORR1C2 LTR MaLR 0 384 1 2 1223 180 0 0 0 chr3 83695905 83695925 -75903858 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 2 1223 1135 265 13 75 chr3 83696071 83696377 -75903406 + B4A SINE B4 2 288 -4 2 1223 1486 271 91 16 chr3 83696609 83697094 -75902689 - MT2A LTR ERVL 0 554 1 2 1223 396 0 0 0 chr3 83697244 83697288 -75902495 + (CA)n Simple_repeat Simple_repeat 2 45 0 2 1223 386 252 37 18 chr3 83698120 83698229 -75901554 + PB1D9 SINE Alu 1 111 -9 2 1223 2498 298 58 17 chr3 83698500 83699490 -75900293 + Lx9 LINE L1 6460 7489 -155 2 1223 24 0 0 0 chr3 83699580 83699604 -75900179 + AT_rich Low_complexity Low_complexity 1 24 0 2 1223 406 311 123 3 chr3 83700955 83701319 -75898464 - L1MB2 LINE L1 -114 6066 5655 2 1223 222 37 0 0 chr3 83702113 83702140 -75897643 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2 1223 663 130 20 0 chr3 83705478 83705578 -75894205 - PB1D9 SINE Alu -1 119 18 2 1223 224 308 63 36 chr3 83706480 83706591 -75893192 - L2b LINE L2 -130 3245 3132 2 1223 305 391 19 50 chr3 83706738 83706999 -75892784 - L2b LINE L2 -988 2431 2179 2 1223 269 203 47 0 chr3 83707867 83707931 -75891852 - ID2 SINE ID -2 81 15 3 1223 185 111 0 0 chr3 83708905 83708932 -75890851 + L2b LINE L2 3308 3334 -41 3 1223 547 268 14 68 chr3 83709683 83709831 -75889952 - B1F1 SINE Alu 0 149 10 3 1223 311 322 21 80 chr3 83709694 83709857 -75889926 - ID_B1 SINE B4 -8 216 66 3 1223 255 125 0 0 chr3 83711878 83711918 -75887865 + (TC)n Simple_repeat Simple_repeat 1 40 0 3 1223 402 21 0 0 chr3 83711918 83711965 -75887818 + (TG)n Simple_repeat Simple_repeat 2 48 0 3 1223 555 295 0 0 chr3 83711965 83712077 -75887706 + RSINE1 SINE B4 30 141 -24 3 1223 385 242 118 34 chr3 83712297 83712486 -75887297 + L1MB3 LINE L1 5701 5903 -265 3 1223 393 259 137 20 chr3 83712649 83712846 -75886937 + L1MB3 LINE L1 5921 6140 -43 3 1223 247 286 63 0 chr3 83714569 83714632 -75885151 + ID2 SINE ID 1 67 -16 3 1223 786 284 107 4 chr3 83715031 83715293 -75884490 + B4A SINE B4 2 290 -2 3 1223 1298 58 86 0 chr3 83716833 83717007 -75882776 - B2_Mm2 SINE B2 -5 190 2 3 1223 186 253 184 31 chr3 83718334 83718432 -75881351 - L2 LINE L2 -1807 1612 1500 3 1223 1973 203 75 51 chr3 83720418 83720910 -75878873 + MT2A LTR ERVL 1 504 -29 3 1223 187 203 34 0 chr3 83720910 83720969 -75878814 + (TA)n Simple_repeat Simple_repeat 2 62 0 3 1223 730 171 78 0 chr3 83721685 83721814 -75877969 + B1_Mm SINE Alu 2 140 -7 3 1223 249 301 203 5 chr3 83722089 83722306 -75877477 - HAL1b LINE L1 -618 1391 1132 3 1223 1527 212 91 10 chr3 83722318 83722723 -75877060 + BGLII_B LTR ERVK 1 438 -3 3 1223 211 132 26 0 chr3 83723284 83723322 -75876461 + (TCTG)n Simple_repeat Simple_repeat 1 39 0 3 1223 256 330 11 0 chr3 83724015 83724106 -75875677 + L1MB4 LINE L1 6009 6100 -80 3 1223 761 190 7 21 chr3 83724654 83724799 -75874984 + B1_Mur1 SINE Alu 6 148 -1 3 1223 945 120 49 0 chr3 83725034 83725176 -75874607 + B1_Mur4 SINE Alu 1 149 -1 3 1223 201 196 0 0 chr3 83725177 83725233 -75874550 + A-rich Low_complexity Low_complexity 1 56 0 3 1223 198 0 0 0 chr3 83725264 83725286 -75874497 + (T)n Simple_repeat Simple_repeat 1 22 0 3 1223 1337 115 11 0 chr3 83725517 83725708 -75874075 + B2_Mm2 SINE B2 2 194 -1 3 1223 389 259 157 0 chr3 83727075 83727183 -75872600 + PB1 SINE Alu 1 125 -2 3 1223 1034 52 104 0 chr3 83727371 83727505 -75872278 - B1_Mus1 SINE Alu 0 148 1 3 1223 1556 50 0 19 chr3 83728182 83728388 -75871395 + L1Md_F2 LINE L1 6367 6568 -14 3 1223 7598 70 16 5 chr3 83728396 83729663 -75870120 + L1_Mus1 LINE L1 5290 6566 -1 3 1223 861 212 40 20 chr3 83729713 83729915 -75869868 + B3 SINE B2 2 207 -9 3 1223 21 0 0 0 chr3 83729915 83729936 -75869847 + AT_rich Low_complexity Low_complexity 1 21 0 3 1223 541 230 23 23 chr3 83730546 83730675 -75869108 - ID_B1 SINE B4 -17 207 79 3 1223 405 298 30 0 chr3 83733825 83733956 -75865827 - B3 SINE B2 -1 215 81 3 1223 650 160 75 60 chr3 83734024 83734157 -75865626 - B1_Mur2 SINE Alu -5 144 10 3 1223 234 0 0 0 chr3 83734390 83734416 -75865367 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 3 1223 331 258 44 20 chr3 83735223 83735334 -75864449 - PB1D7 SINE Alu -7 113 1 3 1223 315 316 111 0 chr3 83735943 83736060 -75863723 + RSINE1 SINE B4 24 153 -12 3 1223 273 275 43 32 chr3 83737319 83737413 -75862370 + B4A SINE B4 182 276 -16 3 1223 203 128 41 41 chr3 83742470 83742519 -75857264 + (CAAA)n Simple_repeat Simple_repeat 3 51 0 3 1223 338 275 27 18 chr3 83743479 83743595 -75856188 - PB1 SINE Alu 0 117 2 3 1223 1047 23 0 0 chr3 83743816 83743947 -75855836 - B1_Mus2 SINE Alu -9 138 8 3 1223 234 0 0 0 chr3 83745097 83745123 -75854660 + (TG)n Simple_repeat Simple_repeat 2 27 0 3 1223 252 0 0 0 chr3 83745123 83745150 -75854633 + (TA)n Simple_repeat Simple_repeat 1 28 0 3 1223 240 35 0 0 chr3 83746498 83746527 -75853256 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 3 1223 198 0 0 0 chr3 83747074 83747096 -75852687 + (TG)n Simple_repeat Simple_repeat 2 23 0 3 1223 710 259 0 0 chr3 83747100 83747247 -75852536 - B3A SINE B2 -47 151 5 3 1223 3635 144 98 8 chr3 83747247 83747882 -75851901 - RLTR17 LTR ERVK 0 692 1 3 1223 252 284 112 31 chr3 83747904 83748002 -75851781 - PB1D10 SINE Alu -7 110 5 3 1223 374 268 80 145 chr3 83748820 83749069 -75850714 + 7SK RNA RNA 9 241 -90 3 1223 229 329 13 0 chr3 83749385 83749461 -75850322 + MER58A DNA MER1_type 5 81 -143 3 1223 2090 45 8 4 chr3 83750500 83750766 -75849017 - L1_Mus3 LINE L1 -5 6633 6367 3 1223 213 39 0 0 chr3 83751186 83751212 -75848571 + (CCAA)n Simple_repeat Simple_repeat 2 27 0 3 1223 436 238 241 9 chr3 83753059 83753275 -75846508 - B4A SINE B4 -16 276 11 3 1224 243 210 55 79 chr3 83755074 83755261 -75844522 - PB1D7 SINE Alu -1 148 2 3 1224 1128 74 0 7 chr3 83756210 83756359 -75843424 - B1_Mus1 SINE Alu 0 148 1 3 1224 504 200 0 0 chr3 83756426 83756541 -75843242 + (CA)n Simple_repeat Simple_repeat 2 116 0 3 1224 781 226 21 5 chr3 83756974 83757165 -75842618 + Lx9 LINE L1 7304 7497 -147 3 1224 877 227 127 49 chr3 83757248 83757493 -75842290 + MTD LTR MaLR 13 276 -143 3 1224 562 283 135 19 chr3 83759888 83760252 -75839531 + L1MB8 LINE L1 4900 5305 -841 3 1224 481 266 141 6 chr3 83760279 83760449 -75839334 + ID_B1 SINE B4 8 200 -24 3 1224 1306 89 28 11 chr3 83760504 83760686 -75839097 - B2_Mm2 SINE B2 -7 188 4 3 1224 485 251 202 30 chr3 83760687 83760954 -75838829 + L1MB8 LINE L1 5333 5645 -539 3 1224 1479 204 16 22 chr3 83760959 83761280 -75838503 + MTD LTR MaLR 1 319 -100 3 1224 314 248 227 5 chr3 83761287 83761490 -75838293 + L1MB8 LINE L1 5691 5938 -240 3 1224 206 208 12 49 chr3 83761847 83761928 -75837855 + CT-rich Low_complexity Low_complexity 1 78 0 3 1224 505 240 132 48 chr3 83762862 83763090 -75836693 - B4A SINE B4 -25 267 21 3 1224 1209 106 84 0 chr3 83763503 83763682 -75836101 + B2_Mm2 SINE B2 2 195 0 3 1224 701 215 28 0 chr3 83763841 83763985 -75835798 + B1_Mur1 SINE Alu 2 149 0 3 1224 210 241 37 0 chr3 83764312 83764366 -75835417 + ID4 SINE ID 2 57 -26 3 1224 306 183 0 0 chr3 83764378 83764449 -75835334 + (CA)n Simple_repeat Simple_repeat 2 72 0 3 1224 23 0 0 0 chr3 83765866 83765889 -75833894 + AT_rich Low_complexity Low_complexity 1 23 0 3 1224 256 241 58 35 chr3 83767646 83767732 -75832051 + PB1D7 SINE Alu 33 120 0 3 1224 23 0 0 0 chr3 83768366 83768389 -75831394 + AT_rich Low_complexity Low_complexity 1 23 0 3 1224 515 293 51 8 chr3 83768469 83768669 -75831114 - B3A SINE B2 -13 203 1 3 1224 230 130 74 0 chr3 83768670 83768724 -75831059 + (TTAAA)n Simple_repeat Simple_repeat 3 60 0 3 1224 769 115 0 8 chr3 83768734 83768857 -75830926 + B1_Mus2 SINE Alu 2 123 -24 3 1224 182 62 0 30 chr3 83768857 83768890 -75830893 + (CAAAC)n Simple_repeat Simple_repeat 2 33 0 3 1224 504 179 76 8 chr3 83769805 83769923 -75829860 + B1F2 SINE Alu 24 149 0 3 1224 661 279 50 10 chr3 83770182 83770381 -75829402 - B3 SINE B2 -9 207 1 3 1224 213 94 0 0 chr3 83770526 83770558 -75829225 + (CA)n Simple_repeat Simple_repeat 1 32 0 3 1224 352 263 84 0 chr3 83770725 83770820 -75828963 + PB1D9 SINE Alu 3 105 -15 3 1224 306 73 0 0 chr3 83771733 83771774 -75828009 + (TA)n Simple_repeat Simple_repeat 2 42 0 3 1224 637 282 15 49 chr3 83771799 83772004 -75827779 + B3A SINE B2 1 198 0 3 1224 22 0 0 0 chr3 83772052 83772074 -75827709 + AT_rich Low_complexity Low_complexity 1 22 0 3 1224 3033 73 10 2 chr3 83772525 83772922 -75826861 + MTB LTR MaLR 1 400 0 3 1224 537 194 83 23 chr3 83773003 83773135 -75826648 - B1F SINE Alu 0 149 10 3 1224 762 204 41 59 chr3 83773232 83773451 -75826332 + B3 SINE B2 2 216 0 3 1224 258 32 0 0 chr3 83773568 83773599 -75826184 + (CAGA)n Simple_repeat Simple_repeat 2 32 0 3 1224 701 284 121 33 chr3 83775511 83775843 -75823940 + MER21B LTR ERV1 457 817 -46 3 1224 1068 50 0 35 chr3 83776206 83776350 -75823433 + B1_Mus1 SINE Alu 2 140 -8 3 1224 195 42 0 0 chr3 83776350 83776374 -75823409 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 3 1224 22 35 0 0 chr3 83777140 83777169 -75822614 + AT_rich Low_complexity Low_complexity 1 29 0 3 1224 234 343 73 9 chr3 83778422 83778531 -75821252 + ORR1E LTR MaLR 34 149 -210 3 1224 1160 236 130 92 chr3 83779098 83779607 -75820176 + RLTR11A LTR ERVK 1 528 0 3 1224 227 348 132 52 chr3 83779703 83779900 -75819883 + MLT1N2 LTR MaLR 9 220 -342 3 1224 495 48 0 0 chr3 83779900 83779962 -75819821 + (GGGA)n Simple_repeat Simple_repeat 2 63 0 3 1224 393 274 560 37 chr3 83779962 83780169 -75819614 + MLT1N2 LTR MaLR 221 536 -26 3 1224 2614 104 39 0 chr3 83781062 83781445 -75818338 + MTB LTR MaLR 1 398 -2 3 1224 847 245 140 27 chr3 83783270 83783606 -75816177 + ORR1D1 LTR MaLR 1 374 0 3 1224 180 0 0 0 chr3 83784822 83784842 -75814941 + (A)n Simple_repeat Simple_repeat 1 20 0 3 1224 2731 7 58 0 chr3 83786236 83786546 -75813237 + L1Md_A LINE L1 6254 6581 -1 3 1224 261 290 16 0 chr3 83786630 83786692 -75813091 + ID2 SINE ID 11 73 -10 3 1224 746 241 11 29 chr3 83787954 83788129 -75811654 + B3A SINE B2 7 178 -20 3 1224 337 286 89 15 chr3 83788148 83788283 -75811500 + L1MB8 LINE L1 6032 6176 -2 3 1224 499 315 20 20 chr3 83789137 83789283 -75810500 - RSINE1 SINE B4 -16 149 4 4 1224 254 267 79 58 chr3 83789827 83789966 -75809817 + MTEa LTR MaLR 234 375 -4 4 1224 678 259 78 82 chr3 83790419 83790844 -75808939 + RMER10A LTR ERVL 1 423 -19 4 1224 209 222 0 0 chr3 83794337 83794382 -75805401 + (CAT)n Simple_repeat Simple_repeat 3 47 0 4 1224 395 313 114 8 chr3 83794393 83794525 -75805258 - RSINE1 SINE B4 0 165 20 4 1224 1362 186 210 3 chr3 83794521 83794850 -75804933 + MTD LTR MaLR 8 404 -15 4 1224 25 31 0 0 chr3 83794907 83794939 -75804844 + AT_rich Low_complexity Low_complexity 1 32 0 4 1224 2435 162 19 12 chr3 83795137 83795555 -75804228 - MTC LTR MaLR 0 421 1 4 1224 363 281 48 75 chr3 83796318 83796464 -75803319 + RMER30 DNA MER1_type 1 142 -60 4 1224 339 310 8 41 chr3 83796358 83796479 -75803304 - Charlie12 DNA MER1_type -2710 163 47 4 1224 242 287 149 0 chr3 83797864 83797958 -75801825 - PB1D10 SINE Alu -8 109 2 4 1224 449 253 6 85 chr3 83797963 83798140 -75801643 + L1MB3 LINE L1 6010 6172 -11 4 1224 571 236 39 0 chr3 83798348 83798475 -75801308 + RSINE1 SINE B4 26 157 -8 4 1224 183 294 61 102 chr3 83798502 83798699 -75801084 + L3 LINE CR1 711 899 -3590 4 1224 556 290 20 7 chr3 83800320 83800466 -75799317 + B1F SINE Alu 2 149 0 4 1224 310 292 31 10 chr3 83801859 83801956 -75797827 - Arthur1B DNA Tip100 -1081 144 46 4 1224 1671 31 0 0 chr3 83802571 83802762 -75797021 - B2_Mm1a SINE B2 -1 192 2 4 1224 265 385 0 0 chr3 83802920 83802998 -75796785 + ID4_ SINE ID 6 83 0 4 1224 376 259 35 7 chr3 83803069 83803213 -75796570 + L1MB5 LINE L1 5282 5429 -751 4 1224 315 248 30 165 chr3 83803213 83803377 -75796406 + B1F SINE Alu 1 142 -7 4 1224 755 270 50 8 chr3 83803581 83803847 -75795936 + L1MB5 LINE L1 5497 5781 -398 4 1224 2120 166 35 11 chr3 83803847 83804219 -75795564 + RMER4B LTR ERVK 1 381 -204 4 1224 227 228 18 0 chr3 83804226 83804283 -75795500 + L1MB5 LINE L1 5893 5950 -224 4 1224 355 262 180 0 chr3 83804542 83804664 -75795119 - ID_B1 SINE B4 0 224 81 4 1224 852 232 5 72 chr3 83804773 83804982 -75794801 + B3A SINE B2 2 196 -2 4 1224 730 234 13 0 chr3 83805078 83805232 -75794551 + RSINE1 SINE B4 9 164 -1 4 1224 318 80 0 0 chr3 83805232 83805282 -75794501 + (CAGA)n Simple_repeat Simple_repeat 1 50 0 4 1224 344 271 0 53 chr3 83805531 83805657 -75794126 + B1F2 SINE Alu 1 112 -37 4 1224 344 194 30 0 chr3 83806139 83806206 -75793577 + ID4_ SINE ID 9 77 -6 4 1224 336 255 44 62 chr3 83806206 83806252 -75793531 + ID_B1 SINE B4 9 119 -105 4 1224 238 213 16 32 chr3 83807156 83807219 -75792564 - RLTR25B LTR ERVK -526 502 441 4 1224 546 185 0 0 chr3 83807165 83807257 -75792526 - B1_Mus2 SINE Alu -54 93 2 4 1224 407 301 190 33 chr3 83807554 83807922 -75791861 - Charlie2b DNA MER1_type -17 2765 2340 4 1224 227 275 33 92 chr3 83808154 83808274 -75791509 - Charlie2b DNA MER1_type -891 1891 1779 4 1224 252 156 67 0 chr3 83808688 83808733 -75791050 + ID SINE ID 35 82 -142 4 1224 273 261 11 43 chr3 83808951 83809043 -75790740 - MER5B DNA MER1_type -88 90 2 4 1224 1240 61 0 0 chr3 83809143 83809291 -75790492 - B1_Mus1 SINE Alu 0 148 1 4 1224 400 174 25 25 chr3 83809317 83809435 -75790348 + CT-rich Low_complexity Low_complexity 3 120 0 4 1224 292 301 102 23 chr3 83810212 83810389 -75789394 - L1MC4 LINE L1 -4673 1542 1352 4 1224 295 225 28 0 chr3 83810888 83810959 -75788824 + MLT1B LTR MaLR 27 99 -291 4 1224 452 282 123 90 chr3 83811804 83812081 -75787702 - B4A SINE B4 0 292 7 4 1224 585 151 5 288 chr3 83813124 83813329 -75786454 - B1F SINE Alu 0 149 3 4 1224 376 271 66 78 chr3 83813805 83814049 -75785734 - RLTR21 LTR ERVK -261 1311 1071 4 1224 396 0 0 0 chr3 83814612 83814656 -75785127 + (TG)n Simple_repeat Simple_repeat 1 44 0 4 1224 767 155 27 47 chr3 83814760 83814909 -75784874 - B1_Mur2 SINE Alu -1 148 3 4 1224 563 262 6 42 chr3 83815072 83815239 -75784544 + RSINE1 SINE B4 5 165 0 4 1224 32 26 0 0 chr3 83815246 83815285 -75784498 + AT_rich Low_complexity Low_complexity 1 39 0 4 1224 1087 192 188 20 chr3 83815747 83816040 -75783743 - ORR1D2 LTR MaLR -28 342 1 4 1224 789 124 70 35 chr3 83817802 83817944 -75781839 - B1_Mm SINE Alu 0 147 1 4 1224 237 313 69 20 chr3 83818096 83818197 -75781586 + Charlie15a DNA MER1_type 111 216 -8 4 1224 458 258 169 0 chr3 83818910 83819034 -75780749 + RSINE1 SINE B4 17 161 -4 4 1224 216 296 143 44 chr3 83819429 83819572 -75780211 - MIR SINE MIR -110 158 5 4 1224 244 297 27 0 chr3 83820039 83820113 -75779670 - ID4 SINE ID 0 83 8 4 1224 1164 43 7 0 chr3 83820306 83820444 -75779339 - B1_Mus1 SINE Alu -9 139 1 4 1224 285 29 0 0 chr3 83820495 83820529 -75779254 + (TG)n Simple_repeat Simple_repeat 1 34 0 4 1224 331 308 71 54 chr3 83820529 83820769 -75779014 - RMER17A LTR ERVK -341 410 167 4 1224 610 252 8 0 chr3 83820656 83820779 -75779004 - RSINE1 SINE B4 -31 134 11 4 1224 647 259 76 99 chr3 83822248 83822603 -75777180 + ORR1D2 LTR MaLR 11 357 -13 4 1224 464 327 13 26 chr3 83822778 83822932 -75776851 + ID_B1 SINE B4 73 224 0 4 1224 204 40 0 0 chr3 83823287 83823312 -75776471 + (TTA)n Simple_repeat Simple_repeat 2 26 0 4 1224 315 0 0 0 chr3 83823839 83823874 -75775909 + (TG)n Simple_repeat Simple_repeat 1 35 0 4 1224 276 143 0 0 chr3 83823899 83823955 -75775828 + (G)n Simple_repeat Simple_repeat 1 56 0 4 1224 414 0 0 0 chr3 83825115 83825161 -75774622 + (CA)n Simple_repeat Simple_repeat 1 46 0 4 1224 540 299 121 30 chr3 83825489 83825720 -75774063 + MLT1C LTR MaLR 215 466 -1 4 1224 299 345 69 55 chr3 83826195 83826413 -75773370 - LTR88b LTR Gypsy? -606 231 11 4 1224 660 261 40 0 chr3 83826624 83826800 -75772983 - MER5A DNA MER1_type -6 183 1 4 1224 393 263 42 8 chr3 83827133 83827252 -75772531 + MLT1C LTR MaLR 474 596 -14 4 1224 789 196 115 6 chr3 83828274 83828448 -75771335 - B3 SINE B2 0 216 24 4 1224 21 0 0 0 chr3 83829598 83829619 -75770164 + AT_rich Low_complexity Low_complexity 1 21 0 4 1224 207 204 0 0 chr3 83830695 83830739 -75769044 + (CATATA)n Simple_repeat Simple_repeat 2 45 0 4 1224 1200 127 11 0 chr3 83831310 83831332 -75768451 - B2_Mm1t SINE B2 -9 184 162 4 1224 351 0 0 0 chr3 83831332 83831371 -75768412 + (TTTA)n Simple_repeat Simple_repeat 4 42 0 4 1224 1200 127 11 0 chr3 83831371 83831529 -75768254 - B2_Mm1t SINE B2 -32 161 3 4 1224 430 270 101 34 chr3 83832629 83832836 -75766947 + L1MC3 LINE L1 7322 7542 -243 4 1224 253 335 87 32 chr3 83833020 83833205 -75766578 + L1MD3 LINE L1 7785 7979 -16 4 1224 596 310 0 0 chr3 83833229 83833371 -75766412 - ID_B1 SINE B4 -1 223 82 4 1224 1175 102 6 0 chr3 83833644 83833821 -75765962 + (GGAA)n Simple_repeat Simple_repeat 3 180 0 4 1224 535 152 0 52 chr3 83834115 83834212 -75765571 - PB1D9 SINE Alu 0 120 29 4 1224 460 355 7 7 chr3 83834507 83834660 -75765123 + RSINE1 SINE B4 2 154 -11 4 1224 364 258 94 72 chr3 83834733 83834871 -75764912 + B1_Mur3 SINE Alu 1 141 -8 4 1224 27 29 0 0 chr3 83834968 83835002 -75764781 + AT_rich Low_complexity Low_complexity 1 34 0 4 1224 927 137 7 0 chr3 83835045 83835184 -75764599 - B1_Mur4 SINE Alu -10 140 1 4 1224 760 247 0 62 chr3 83835707 83835918 -75763865 + B3A SINE B2 1 198 0 4 1224 311 287 25 115 chr3 83836147 83836269 -75763514 + PB1D9 SINE Alu 1 111 -9 4 1224 333 0 0 0 chr3 83836269 83836306 -75763477 + (TAAA)n Simple_repeat Simple_repeat 2 38 0 4 1224 589 229 31 17 chr3 83836677 83836853 -75762930 + B3A SINE B2 1 189 -6 4 1224 309 221 21 113 chr3 83837423 83837520 -75762263 + PB1D10 SINE Alu 30 117 0 4 1224 224 310 63 110 chr3 83838196 83838323 -75761460 + MIR SINE MIR 3 123 -139 4 1224 342 0 0 0 chr3 83839485 83839523 -75760260 + (TG)n Simple_repeat Simple_repeat 2 39 0 4 1224 306 0 0 0 chr3 83839718 83839752 -75760031 + (CA)n Simple_repeat Simple_repeat 2 35 0 4 1224 331 244 24 60 chr3 83839973 83840056 -75759727 + ID4_ SINE ID 4 83 0 4 1224 962 149 0 0 chr3 83840191 83840332 -75759451 - B1_Mur3 SINE Alu 0 149 9 4 1224 490 248 42 108 chr3 83840196 83840363 -75759420 - B4 SINE B4 -71 221 66 4 1224 1159 55 7 0 chr3 83840392 83840537 -75759246 - B1_Mm SINE Alu 0 147 2 4 1224 237 33 0 0 chr3 83840541 83840571 -75759212 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 4 1224 497 238 36 133 chr3 83841115 83841127 -75758656 - B4 SINE B4 -71 221 214 4 1224 210 37 0 0 chr3 83841127 83841154 -75758629 + (TTG)n Simple_repeat Simple_repeat 1 27 0 4 1224 1051 23 0 37 chr3 83841154 83841271 -75758512 - B1_Mus1 SINE Alu -13 135 19 4 1224 497 238 36 133 chr3 83841271 83841306 -75758477 - B4 SINE B4 -79 213 73 4 1224 318 275 127 9 chr3 83841599 83841709 -75758074 + PB1 SINE Alu 1 123 -4 4 1224 373 319 18 0 chr3 83841767 83841880 -75757903 + MER20 DNA MER1_type 101 215 -4 4 1224 265 173 13 39 chr3 83844089 83844167 -75755616 + C-rich Low_complexity Low_complexity 6 81 0 4 1224 30 59 0 0 chr3 83845510 83845561 -75754222 + AT_rich Low_complexity Low_complexity 1 51 0 4 1224 236 299 41 76 chr3 83846217 83846362 -75753421 + B1F SINE Alu 10 149 0 4 1224 374 211 26 0 chr3 83846365 83846441 -75753342 + ID4 SINE ID 3 80 -3 4 1224 465 331 31 0 chr3 83847097 83847224 -75752559 - RSINE1 SINE B4 -31 134 4 4 1224 422 252 87 22 chr3 83847297 83847435 -75752348 + MLT1A1 LTR MaLR 262 408 0 5 1224 532 320 148 58 chr3 83847549 83848226 -75751557 + L2 LINE L2 2316 3053 -366 5 1224 293 262 107 0 chr3 83848244 83848328 -75751455 - B1_Mur2 SINE Alu 0 149 57 5 1224 309 327 29 10 chr3 83848353 83848455 -75751328 - RSINE1 SINE B4 -59 106 3 5 1224 1103 89 14 0 chr3 83848861 83849007 -75750776 + B1_Mus1 SINE Alu 1 148 0 5 1224 486 49 0 0 chr3 83849007 83849068 -75750715 + (GGA)n Simple_repeat Simple_repeat 3 63 0 5 1224 1240 114 115 29 chr3 83849640 83849848 -75749935 - URR1A DNA MER1_type 0 226 1 5 1224 245 405 23 16 chr3 83849906 83850034 -75749749 - MIR SINE MIR -21 241 113 5 1224 842 286 90 0 chr3 83850034 83850272 -75749511 - MLT1A0 LTR MaLR 0 365 105 5 1224 248 306 0 0 chr3 83850272 83850334 -75749449 - MTEa LTR MaLR 0 379 318 5 1224 400 233 107 0 chr3 83850328 83850431 -75749352 - ORR1E LTR MaLR -245 114 1 5 1224 282 221 93 48 chr3 83850431 83850510 -75749273 - MLT1A0 LTR MaLR -252 113 37 5 1224 306 0 0 0 chr3 83850753 83850787 -75748996 + (CCCCCG)n Simple_repeat Simple_repeat 2 35 0 5 1224 435 38 0 0 chr3 83851524 83851577 -75748206 + (CA)n Simple_repeat Simple_repeat 2 54 0 5 1224 355 221 92 1 chr3 83851912 83852025 -75747758 + AluF_3 SINE Alu 1 208 -103 5 1224 191 262 0 0 chr3 83852145 83852187 -75747596 - MIR SINE MIR -195 67 26 5 1224 669 110 0 0 chr3 83852236 83852336 -75747447 + (TC)n Simple_repeat Simple_repeat 1 100 0 5 1224 228 86 103 0 chr3 83852372 83852430 -75747353 + (TCTCTG)n Simple_repeat Simple_repeat 6 69 0 5 1224 261 0 0 0 chr3 83852441 83852470 -75747313 + (TG)n Simple_repeat Simple_repeat 2 30 0 5 1224 249 33 0 0 chr3 83853332 83853362 -75746421 + (TG)n Simple_repeat Simple_repeat 1 30 0 5 1224 342 169 0 0 chr3 83853362 83853451 -75746332 + GA-rich Low_complexity Low_complexity 2 90 0 5 1224 256 65 0 61 chr3 83853514 83853563 -75746220 + (TTA)n Simple_repeat Simple_repeat 2 47 0 5 1224 488 277 20 26 chr3 83853609 83853761 -75746022 - B4A SINE B4 -141 151 1 5 1224 420 267 49 80 chr3 83854545 83854708 -75745075 + RSINE1 SINE B4 2 159 -6 5 1224 447 52 0 0 chr3 83855196 83855254 -75744529 + (CA)n Simple_repeat Simple_repeat 1 58 0 5 1224 317 250 102 66 chr3 83855499 83855666 -75744117 + MTEa LTR MaLR 206 378 -1 5 1224 661 164 0 0 chr3 83855730 83855840 -75743943 + RMER2 LTR ERV1 1 110 -457 5 1224 2575 80 102 3 chr3 83855840 83856204 -75743579 - MTB LTR MaLR 0 400 1 5 1224 7387 91 13 70 chr3 83856204 83857368 -75742415 - MTB-int LTR MaLR 0 1098 1 5 1224 615 53 0 0 chr3 83857368 83857443 -75742340 - MTB LTR MaLR 0 396 322 5 1224 2470 78 3 0 chr3 83857454 83857776 -75742007 + IAPEY2_LTR LTR ERVK 35 357 0 5 1224 807 132 51 44 chr3 83857776 83857934 -75741849 + IAPLTR4_I LTR ERVK 22 180 -1290 5 1224 15470 108 13 25 chr3 83857933 83860160 -75739623 + IAPEY3-int LTR ERVK 524 2723 -4957 5 1224 3366 45 91 0 chr3 83860127 83860723 -75739060 + IAPEY3-int LTR ERVK 4852 5501 -2179 5 1224 2599 48 69 0 chr3 83860719 83861315 -75738468 + IAPEY3-int LTR ERVK 7044 7680 0 5 1224 2511 80 3 0 chr3 83861325 83861650 -75738133 + IAPEY2_LTR LTR ERVK 32 357 0 5 1224 624 103 0 40 chr3 83861650 83861739 -75738044 - MTB LTR MaLR -61 339 255 5 1224 1551 50 0 57 chr3 83861721 83861933 -75737850 + MTB_Mm LTR MaLR 208 407 0 5 1224 1123 208 69 121 chr3 83861934 83862339 -75737444 + RMER2 LTR ERV1 179 562 -5 5 1224 672 251 158 0 chr3 83862367 83862538 -75737245 - ID_B1 SINE B4 0 224 27 5 1224 338 267 13 0 chr3 83862601 83862676 -75737107 - PB1 SINE Alu -7 120 45 5 1224 334 297 0 47 chr3 83862984 83863090 -75736693 - RMER12 LTR ERVK -472 850 750 5 1224 22 35 0 0 chr3 83864609 83864638 -75735145 + AT_rich Low_complexity Low_complexity 1 29 0 5 1224 292 164 164 0 chr3 83864638 83864711 -75735072 - L1MA8 LINE L1 -21 6270 6186 5 1224 185 324 26 39 chr3 83864888 83864965 -75734818 - L3 LINE CR1 -3570 919 844 5 1224 942 286 149 70 chr3 83865694 83866413 -75733370 - L2a LINE L2 -206 3220 2478 5 1224 536 147 7 2 chr3 83866747 83866838 -75732945 + B1_Mus2 SINE Alu 1 93 -221 5 1224 485 299 6 0 chr3 83866838 83866995 -75732788 + (TG)n Simple_repeat Simple_repeat 1 158 0 5 1224 1196 242 14 31 chr3 83867032 83867318 -75732465 - B4A SINE B4 -7 285 5 5 1224 1628 181 18 44 chr3 83867849 83868189 -75731594 - ORR1D1 LTR MaLR -43 331 1 5 1224 585 0 0 0 chr3 83868933 83868998 -75730785 + (TCTA)n Simple_repeat Simple_repeat 2 66 0 5 1224 259 261 14 55 chr3 83869261 83869334 -75730449 - ID4 SINE ID -2 81 12 5 1224 318 26 0 0 chr3 83870079 83870118 -75729665 + (CA)n Simple_repeat Simple_repeat 2 40 0 5 1224 594 239 125 23 chr3 83870413 83870593 -75729190 - B3A SINE B2 -8 208 9 5 1224 483 187 33 11 chr3 83870608 83870700 -75729083 - PB1D10 SINE Alu 0 117 24 5 1224 230 333 0 0 chr3 83870965 83871037 -75728746 - ID4_ SINE ID -10 73 2 5 1224 285 330 9 91 chr3 83871260 83871370 -75728413 + PB1 SINE Alu 27 127 0 5 1224 317 239 15 0 chr3 83871545 83871612 -75728171 - PB1D9 SINE Alu -1 119 52 5 1224 848 250 106 75 chr3 83871660 83872100 -75727683 - Lx8 LINE L1 -2 7471 7011 5 1224 664 239 125 95 chr3 83872195 83872399 -75727384 + L1MB3 LINE L1 5802 6004 -179 5 1224 848 242 4 49 chr3 83872399 83872625 -75727158 - B3 SINE B2 0 216 1 5 1224 664 239 125 95 chr3 83872625 83872789 -75726994 + L1MB3 LINE L1 6005 6181 -2 5 1224 480 306 29 7 chr3 83873895 83874033 -75725750 + B1F1 SINE Alu 8 148 -1 5 1224 560 302 83 6 chr3 83874045 83874225 -75725558 + B3A SINE B2 5 198 0 5 1224 361 329 83 87 chr3 83874594 83874847 -75724936 - MamGypLTR1c LTR Gypsy -17 786 535 5 1224 877 234 90 35 chr3 83875154 83875451 -75724332 + MTD LTR MaLR 66 357 -43 5 1224 481 276 68 29 chr3 83875458 83875663 -75724120 - B3 SINE B2 -3 213 1 5 1224 791 118 49 6 chr3 83876069 83876231 -75723552 + GA-rich Low_complexity Low_complexity 5 173 0 5 1224 389 98 0 0 chr3 83876231 83876282 -75723501 + (GGAA)n Simple_repeat Simple_repeat 2 52 0 5 1224 567 43 0 0 chr3 83876503 83876573 -75723210 + (TCTA)n Simple_repeat Simple_repeat 4 73 0 5 1224 1264 83 0 23 chr3 83876577 83876750 -75723033 - B2_Mm2 SINE B2 -25 170 2 5 1224 324 0 0 0 chr3 83877235 83877271 -75722512 + (TG)n Simple_repeat Simple_repeat 2 37 0 5 1224 281 313 17 34 chr3 83878177 83878191 -75721592 - B1_Mus2 SINE Alu -28 119 3 5 1224 542 229 0 0 chr3 83878191 83878296 -75721487 - ID_B1 SINE B4 -36 188 84 5 1224 664 273 27 68 chr3 83878537 83878757 -75721026 - ID_B1 SINE B4 -13 211 1 5 1224 634 321 63 14 chr3 83879948 83880232 -75719551 - Tigger16b DNA Tigger -3 334 37 5 1224 255 31 0 0 chr3 83880455 83880487 -75719296 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 5 1224 265 314 142 30 chr3 83880542 83880739 -75719044 - MIRb SINE MIR -10 258 40 5 1224 1764 242 46 28 chr3 83881454 83882096 -75717687 + Lx9 LINE L1 5431 6126 -1570 5 1224 280 197 7 96 chr3 83882198 83882333 -75717450 + Lx9 LINE L1 7458 7580 -64 5 1224 28 48 0 0 chr3 83882351 83882393 -75717390 + AT_rich Low_complexity Low_complexity 1 42 0 5 1224 421 268 221 0 chr3 83882596 83882723 -75717060 - RSINE1 SINE B4 0 165 11 5 1224 4655 110 38 16 chr3 83882739 83883479 -75716304 - RMER6A LTR ERVK 0 756 1 5 1224 31 26 0 0 chr3 83885654 83885692 -75714091 + AT_rich Low_complexity Low_complexity 1 38 0 5 2 1333 220 53 7 chr3 83885916 83886200 -75713583 + Lx8 LINE L1 6418 6714 -759 5 1225 777 204 13 13 chr3 83886273 83886422 -75713361 + B1_Mur2 SINE Alu 1 149 0 5 1225 186 103 0 0 chr3 83886425 83886454 -75713329 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 5 1225 213 211 0 0 chr3 83886472 83886524 -75713259 + GA-rich Low_complexity Low_complexity 1 52 0 5 1225 1293 97 11 21 chr3 83886639 83886829 -75712954 - B2_Mm2 SINE B2 -7 188 1 5 1225 234 0 0 0 chr3 83886834 83886860 -75712923 + (TTTTG)n Simple_repeat Simple_repeat 1 26 0 5 1225 329 311 93 37 chr3 83887026 83887240 -75712543 + L1M4 LINE L1 4304 4529 -1617 5 1225 647 249 142 73 chr3 83887539 83887786 -75711997 + B4A SINE B4 3 266 -26 5 1225 4491 95 24 2 chr3 83887787 83888422 -75711361 + Lx3B LINE L1 6295 6943 -30 5 1225 351 0 0 0 chr3 83888466 83888505 -75711278 + (CA)n Simple_repeat Simple_repeat 2 40 0 5 1225 298 316 0 0 chr3 83888584 83888663 -75711120 - MER58C DNA MER1_type -9 206 128 5 1225 411 278 51 6 chr3 83889670 83889847 -75709936 + MER63D DNA AcHobo 72 256 -805 5 1225 621 245 50 0 chr3 83889849 83889988 -75709795 + ID_B1 SINE B4 72 217 -7 5 1225 251 283 73 32 chr3 83889879 83890003 -75709780 - YREP_Mm Unknown Unknown -1518 294 166 5 1225 298 222 101 34 chr3 83890003 83890092 -75709691 + B4 SINE B4 3 101 -64 5 1225 399 167 0 0 chr3 83890775 83890835 -75708948 - PB1D7 SINE Alu -27 93 34 5 1225 224 157 20 0 chr3 83891550 83891601 -75708182 + CT-rich Low_complexity Low_complexity 1 52 0 5 1225 462 61 0 0 chr3 83891601 83891667 -75708116 + (TG)n Simple_repeat Simple_repeat 2 67 0 5 1225 482 284 94 38 chr3 83892877 83893007 -75706776 + MLT1B LTR MaLR 45 186 -204 5 1225 513 0 0 0 chr3 83893007 83893064 -75706719 + (GA)n Simple_repeat Simple_repeat 2 58 0 5 1225 482 284 94 38 chr3 83893064 83893145 -75706638 + MLT1B LTR MaLR 187 268 -122 5 1225 180 0 0 0 chr3 83893422 83893442 -75706341 + (CA)n Simple_repeat Simple_repeat 2 21 0 5 1225 858 172 132 50 chr3 83893768 83894049 -75705734 + Lx7 LINE L1 7382 7685 -11 5 1225 654 150 142 0 chr3 83894050 83894170 -75705613 + B1_Mus2 SINE Alu 11 147 0 5 1225 2659 124 37 5 chr3 83894194 83894574 -75705209 + ORR1B1 LTR MaLR 1 392 -2 5 1225 670 287 20 15 chr3 83894584 83894782 -75705001 - B3 SINE B2 -15 201 3 6 1225 305 352 58 0 chr3 83894981 83895120 -75704663 - ID_B1 SINE B4 -11 213 67 6 1225 648 198 7 23 chr3 83895201 83895333 -75704450 + B1_Mus2 SINE Alu 14 147 0 6 1225 493 250 132 39 chr3 83896020 83896149 -75703634 - ID_B1 SINE B4 -1 223 83 6 1225 28 0 0 0 chr3 83896241 83896269 -75703514 + AT_rich Low_complexity Low_complexity 1 28 0 6 1225 457 260 9 46 chr3 83896732 83896841 -75702942 - PB1D10 SINE Alu -10 107 3 6 1225 268 342 13 0 chr3 83897181 83897260 -75702523 + ID4_ SINE ID 3 82 -1 6 1225 288 301 87 10 chr3 83898087 83898191 -75701592 + B1_Mur2 SINE Alu 35 147 -3 6 1225 376 270 39 20 chr3 83898267 83898369 -75701414 + PB1D10 SINE Alu 14 117 0 6 1225 623 190 163 23 chr3 83898522 83898651 -75701132 - B1_Mur3 SINE Alu -2 147 1 6 1225 813 163 295 0 chr3 83898676 83898842 -75700941 - B3 SINE B2 0 216 2 6 1225 343 263 135 59 chr3 83898916 83899138 -75700645 - L1MB8 LINE L1 -93 6085 5847 6 1225 647 250 95 139 chr3 83899241 83899334 -75700449 - L1M4c LINE L1 -504 6527 6444 6 1225 683 218 35 21 chr3 83899334 83899479 -75700304 - B1F1 SINE Alu -1 148 2 6 1225 647 250 95 139 chr3 83899479 83899611 -75700172 - L1M4c LINE L1 -588 6443 6337 6 1225 994 211 97 5 chr3 83899611 83899806 -75699977 + B3 SINE B2 1 213 -3 6 1225 1395 288 127 48 chr3 83899806 83900841 -75698942 - L1M4c LINE L1 -695 6336 5185 6 1225 298 209 136 23 chr3 83900841 83900929 -75698854 + ID_B1 SINE B4 78 175 -49 6 1225 358 167 43 43 chr3 83900860 83900954 -75698829 + PB1D10 SINE Alu 24 117 0 6 1225 1541 55 11 0 chr3 83900964 83901146 -75698637 + B2_Mm1t SINE B2 1 184 -9 6 1225 579 250 6 69 chr3 83901577 83901736 -75698047 + B1_Mur1 SINE Alu 1 149 0 6 1225 328 295 132 0 chr3 83901868 83902034 -75697749 - L1M4c LINE L1 -2316 4684 4497 6 1225 1009 239 109 27 chr3 83902292 83902619 -75697164 - ORR1D2 LTR MaLR 0 370 4 6 1225 457 303 69 0 chr3 83902704 83902922 -75696861 - L1M4c LINE L1 -3782 3224 2992 6 1225 955 274 101 49 chr3 83902958 83903284 -75696499 + ORR1E LTR MaLR 6 348 -11 6 1225 201 145 0 83 chr3 83903415 83903475 -75696308 + A-rich Low_complexity Low_complexity 2 56 0 6 1225 818 125 35 35 chr3 83903482 83903623 -75696160 + B1_Mus2 SINE Alu 1 141 -6 6 1225 4845 50 0 4 chr3 83903637 83904196 -75695587 + L1Md_F2 LINE L1 6013 6569 -13 6 1225 213 39 0 0 chr3 83904201 83904227 -75695556 + (GAAAA)n Simple_repeat Simple_repeat 4 29 0 6 1225 337 276 51 2 chr3 83904866 83905010 -75694773 - L1M4c LINE L1 -5143 2191 2033 6 1225 334 323 116 12 chr3 83904981 83905388 -75694395 - L1M4c LINE L1 -5504 1830 1382 6 1225 383 264 110 0 chr3 83905509 83905600 -75694183 - PB1 SINE Alu -26 101 1 6 1225 306 233 87 0 chr3 83906393 83906496 -75693287 - L1MEc LINE L1 -5260 1140 1029 6 1225 246 259 56 11 chr3 83906638 83906728 -75693055 - L1MEc LINE L1 -5617 783 690 6 1225 719 144 0 0 chr3 83906985 83907096 -75692687 - B1_Mus1 SINE Alu 0 148 38 6 1225 233 219 63 137 chr3 83907063 83907158 -75692625 - RLTR25B LTR ERVK -433 595 508 6 1225 431 191 17 94 chr3 83907783 83907901 -75691882 + PB1D7 SINE Alu 6 114 -6 6 1225 648 0 0 0 chr3 83907906 83907978 -75691805 + (TC)n Simple_repeat Simple_repeat 1 72 0 6 1225 36 70 0 0 chr3 83908179 83908250 -75691533 + AT_rich Low_complexity Low_complexity 1 71 0 6 1225 689 238 0 0 chr3 83908287 83908413 -75691370 + RSINE1 SINE B4 4 129 -36 6 1225 639 314 34 45 chr3 83909070 83909334 -75690449 + MER2 DNA MER2_type 4 264 -81 6 1225 21 0 0 0 chr3 83909403 83909424 -75690359 + AT_rich Low_complexity Low_complexity 1 21 0 6 1225 441 228 123 0 chr3 83909424 83909538 -75690245 - RSINE1 SINE B4 -35 130 3 6 1225 22 0 0 0 chr3 83909711 83909733 -75690050 + AT_rich Low_complexity Low_complexity 1 22 0 6 1225 277 239 158 9 chr3 83910331 83910445 -75689338 + MER3 DNA MER1_type 1 131 -78 6 1225 184 371 11 11 chr3 83910712 83910802 -75688981 + MIR SINE MIR 88 177 -85 6 1225 1330 178 65 71 chr3 83910902 83911211 -75688572 - RLTR11A LTR ERVK 0 528 222 6 1225 4068 178 38 38 chr3 83911213 83912064 -75687719 + MYSERV16_I-int LTR ERVK 1400 2250 -76 6 1225 1422 147 300 49 chr3 83912111 83912447 -75687336 + RLTR11A LTR ERVK 1 420 -108 6 1225 737 132 201 0 chr3 83912428 83912572 -75687211 - RLTR11A LTR ERVK -355 173 1 6 1225 774 255 130 0 chr3 83913176 83913368 -75686415 - ID_B1 SINE B4 -5 219 3 6 1225 507 252 17 9 chr3 83913375 83913491 -75686292 - PB1D7 SINE Alu -3 117 1 6 1225 214 216 164 73 chr3 83913614 83913669 -75686114 + ID2 SINE ID 2 61 -22 6 1225 5830 181 53 35 chr3 83913669 83915301 -75684482 + L1_Mur3 LINE L1 179 1967 -3913 6 1225 999 148 189 11 chr3 83915301 83915492 -75684291 - URR1B DNA MER1_type 0 225 1 6 1225 5830 167 47 30 chr3 83915492 83916023 -75683760 + L1_Mur3 LINE L1 1968 2494 -3386 6 1225 305 250 0 81 chr3 83916023 83916110 -75683673 - MT2A LTR ERVL -453 80 1 6 1225 723 117 8 16 chr3 83916110 83916232 -75683551 - MERVL_2A-int LTR ERVL 0 5761 5641 6 1225 227 260 49 49 chr3 83916264 83916345 -75683438 - ORR1A3-int LTR MaLR -1339 624 544 6 1225 5106 164 29 10 chr3 83916345 83917536 -75682247 - MERVL_2A-int LTR ERVL -153 5608 4310 6 1225 1847 189 24 3 chr3 83917535 83917865 -75681918 - MERVL_2A-int LTR ERVL -3181 2580 2244 6 1225 3138 184 122 3 chr3 83917863 83918463 -75681320 - MERVL_2A-int LTR ERVL -4646 1115 445 6 1225 2156 178 83 16 chr3 83918991 83919425 -75680358 - MERVL_2A-int LTR ERVL -5295 466 4 6 1225 283 111 44 0 chr3 83919427 83919472 -75680311 - MT2A LTR ERVL 0 533 487 6 1225 438 20 0 0 chr3 83919473 83919524 -75680259 + (CA)n Simple_repeat Simple_repeat 2 52 0 6 1225 1707 175 155 102 chr3 83919589 83920028 -75679755 - MT2A LTR ERVL -71 462 1 6 1225 381 277 69 6 chr3 83920099 83920259 -75679524 - MIR SINE MIR -13 249 80 6 1225 21 36 0 0 chr3 83920543 83920571 -75679212 + AT_rich Low_complexity Low_complexity 1 28 0 6 1225 1931 183 56 32 chr3 83920599 83920919 -75678864 - MTC LTR MaLR 0 421 92 6 1225 1336 122 88 0 chr3 83920919 83921124 -75678659 - URR1B DNA MER1_type -1 224 2 6 1225 1931 183 56 32 chr3 83921124 83921214 -75678569 - MTC LTR MaLR -330 91 1 6 1225 428 248 43 26 chr3 83921274 83921390 -75678393 - PB1D9 SINE Alu -1 119 2 6 1225 294 224 39 26 chr3 83923149 83923227 -75676556 - MER5A DNA MER1_type -110 79 1 6 1225 283 203 119 0 chr3 83923906 83923965 -75675818 - B1_Mus2 SINE Alu -76 71 6 6 1225 870 233 339 34 chr3 83923981 83924391 -75675392 - L1MC1 LINE L1 -1 6332 5797 6 1225 1315 61 0 0 chr3 83924681 83924829 -75674954 + B1_Mus1 SINE Alu 1 148 0 6 1225 27 29 0 0 chr3 83924829 83924863 -75674920 + AT_rich Low_complexity Low_complexity 1 34 0 6 1225 5298 75 8 1 chr3 83925220 83925949 -75673834 - MusHAL1 LINE L1 -632 2080 1347 6 1225 872 95 0 62 chr3 83925953 83926099 -75673684 - L1VL2 LINE L1 -5899 436 300 6 1225 335 128 0 0 chr3 83926095 83926142 -75673641 - L1VL2 LINE L1 -6144 191 145 6 1225 278 132 75 0 chr3 83926131 83926184 -75673599 - L1MB3 LINE L1 -287 5896 5840 6 1225 491 305 98 53 chr3 83926184 83926409 -75673374 - B4A SINE B4 -57 235 1 6 1225 333 309 12 0 chr3 83926468 83926549 -75673234 - ID4_ SINE ID 0 83 2 6 1225 322 208 180 1 chr3 83928096 83928178 -75671605 - PB1 SINE Alu -11 116 21 6 1225 228 294 123 38 chr3 83928210 83928316 -75671467 + MLT1L LTR MaLR 3 117 -493 6 1225 283 305 10 10 chr3 83928428 83928524 -75671259 + G-rich Low_complexity Low_complexity 3 98 0 6 1225 189 0 0 0 chr3 83929660 83929681 -75670102 + (T)n Simple_repeat Simple_repeat 1 21 0 6 1225 233 159 23 0 chr3 83930079 83930123 -75669660 + MTEa LTR MaLR 309 353 -26 6 1225 22 0 0 0 chr3 83930266 83930288 -75669495 + AT_rich Low_complexity Low_complexity 1 22 0 6 1225 230 240 114 48 chr3 83930703 83930808 -75668975 - L1MB2 LINE L1 -15 6156 6045 6 1225 623 250 75 21 chr3 83931174 83931362 -75668421 - B3A SINE B2 0 198 1 6 1225 984 191 136 0 chr3 83932267 83932466 -75667317 + URR1A DNA MER1_type 1 226 0 6 1225 549 286 119 21 chr3 83932553 83932696 -75667087 + RSINE1 SINE B4 9 165 0 6 1225 353 250 153 1 chr3 83934417 83934615 -75665168 + L1MC2 LINE L1 2272 2496 -3823 6 1225 387 0 0 0 chr3 83934620 83934663 -75665120 + (TTG)n Simple_repeat Simple_repeat 3 45 0 6 1225 418 280 207 6 chr3 83934667 83934836 -75664947 + MER2 DNA MER2_type 7 209 -136 6 1225 374 311 144 39 chr3 83934844 83935128 -75664655 + MLT1F2 LTR MaLR 245 558 -2 6 1225 306 305 8 71 chr3 83935841 83935968 -75663815 + ORR1E LTR MaLR 79 197 -162 6 1225 341 235 74 16 chr3 83935986 83936107 -75663676 - L1MB4 LINE L1 -261 5919 5792 6 1225 848 260 117 27 chr3 83936223 83936852 -75662931 + L1MC2 LINE L1 5441 6139 -378 6 1225 225 172 169 15 chr3 83936863 83936928 -75662855 + PB1D7 SINE Alu 46 120 0 6 1225 548 282 23 0 chr3 83937060 83937191 -75662592 + ID_B1 SINE B4 91 224 0 6 1225 781 272 56 5 chr3 83937243 83937457 -75662326 + B4A SINE B4 43 267 -25 6 1225 369 0 0 0 chr3 83937483 83937524 -75662259 + (CA)n Simple_repeat Simple_repeat 2 42 0 6 1225 288 211 25 38 chr3 83937702 83937781 -75662002 - ID SINE ID -143 81 4 6 1225 276 303 40 0 chr3 83938557 83938633 -75661150 - ID4 SINE ID -2 81 3 6 1225 239 291 0 0 chr3 83940167 83940222 -75659561 - MLT1B LTR MaLR -335 55 1 6 1225 1260 160 57 0 chr3 83940279 83940491 -75659292 - URR1B DNA MER1_type -1 224 1 6 1225 237 179 89 0 chr3 83940621 83940677 -75659106 + ID4_ SINE ID 13 73 -10 6 1225 318 315 47 66 chr3 83941111 83941196 -75658587 + MLT1C LTR MaLR 261 347 -120 6 1225 2440 114 76 119 chr3 83941196 83941683 -75658100 - RMER4A LTR ERVK 0 466 1 6 1225 318 315 47 66 chr3 83941683 83941808 -75657975 + MLT1C LTR MaLR 348 467 0 6 1225 251 54 0 26 chr3 83941879 83941917 -75657866 + (TA)n Simple_repeat Simple_repeat 2 38 0 6 1225 814 225 128 25 chr3 83942493 83942689 -75657094 + B3 SINE B2 1 216 0 6 1225 206 205 0 0 chr3 83942847 83942886 -75656897 + G-rich Low_complexity Low_complexity 1 39 0 6 1225 324 304 87 29 chr3 83943274 83943481 -75656302 + L1MC LINE L1 5088 5306 -840 6 1225 198 246 152 34 chr3 83944919 83944978 -75654805 + MIRb SINE MIR 25 90 -178 6 1225 189 0 0 0 chr3 83945724 83945745 -75654038 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 6 1225 1138 62 0 0 chr3 83945792 83945937 -75653846 + B1_Mm SINE Alu 2 146 -1 6 1225 594 106 266 0 chr3 83946095 83946208 -75653575 - B1_Mus2 SINE Alu 0 147 5 6 1225 2963 19 0 113 chr3 83946303 83946717 -75653066 - IAPLTR1_Mm LTR ERVK 0 367 1 7 1225 57008 21 15 2 chr3 83946717 83953113 -75646670 - IAPEz-int LTR ERVK 0 6481 8 7 1225 2963 19 0 113 chr3 83953113 83953527 -75646256 - IAPLTR1_Mm LTR ERVK 0 367 1 7 1225 925 220 35 0 chr3 83953897 83954097 -75645686 + B3 SINE B2 1 207 -9 7 1225 23 0 0 0 chr3 83954097 83954120 -75645663 + AT_rich Low_complexity Low_complexity 1 23 0 7 1225 450 100 0 109 chr3 83954159 83954260 -75645523 + L1Md_F2 LINE L1 6493 6582 0 7 1225 25 51 0 0 chr3 83954379 83954418 -75645365 + AT_rich Low_complexity Low_complexity 1 39 0 7 1225 522 281 8 0 chr3 83954581 83954702 -75645081 - RSINE1 SINE B4 -42 123 2 7 1225 1804 209 82 29 chr3 83954749 83955270 -75644513 - RMER15 LTR ERVL 0 575 27 7 1225 919 156 43 38 chr3 83955291 83955477 -75644306 + URR1B DNA MER1_type 39 225 0 7 1225 273 207 35 0 chr3 83955531 83955589 -75644194 - RMER15 LTR ERVL -515 60 1 7 1225 268 309 195 34 chr3 83955814 83956230 -75643553 + L2 LINE L2 2232 2714 -705 7 1225 369 157 0 0 chr3 83958112 83958128 -75641655 + A-rich Low_complexity Low_complexity 1 16 0 7 1225 1134 62 14 0 chr3 83958128 83958273 -75641510 + B1_Mus1 SINE Alu 2 148 0 7 1225 369 157 0 0 chr3 83958273 83958326 -75641457 + A-rich Low_complexity Low_complexity 17 69 0 7 1225 207 143 122 0 chr3 83959086 83959135 -75640648 + (GGGTG)n Simple_repeat Simple_repeat 1 55 0 7 1225 197 108 0 26 chr3 83960100 83960138 -75639645 + (TTTTA)n Simple_repeat Simple_repeat 4 40 0 7 1225 769 185 0 0 chr3 83960139 83960274 -75639509 - B1_Mus1 SINE Alu 0 148 14 7 1225 328 211 19 87 chr3 83960184 83960288 -75639495 - MT2B LTR ERVL -344 257 161 7 1225 256 229 45 67 chr3 83960392 83960481 -75639302 + L1MD1 LINE L1 6155 6241 -1 7 1225 528 16 0 0 chr3 83960762 83960823 -75638960 + (TC)n Simple_repeat Simple_repeat 2 62 0 7 1225 465 328 22 11 chr3 83961821 83962003 -75637780 - B4 SINE B4 -87 205 22 7 1225 1580 132 143 13 chr3 83962010 83962318 -75637465 + ORR1B1 LTR MaLR 2 349 -45 7 1225 1136 85 0 0 chr3 83962319 83962460 -75637323 + B1_Mus1 SINE Alu 3 143 -5 7 1225 272 264 11 75 chr3 83962522 83962616 -75637167 + MER45R DNA Tip100 1494 1581 0 7 1225 436 294 8 23 chr3 83962750 83962879 -75636904 - RMER10B LTR ERVL -2 396 270 7 1225 189 350 42 11 chr3 83963157 83963268 -75636515 + L2c LINE L2 3234 3350 -25 7 1225 24 32 0 0 chr3 83965139 83965170 -75634613 + AT_rich Low_complexity Low_complexity 1 31 0 7 1225 1085 89 7 0 chr3 83966513 83966659 -75633124 + B1_Mus1 SINE Alu 2 148 0 7 1225 199 343 29 10 chr3 83966793 83966896 -75632887 + L2a LINE L2 3291 3395 -31 7 1225 226 283 0 0 chr3 83966958 83967018 -75632765 + ID4 SINE ID 24 83 0 7 1225 22 0 0 0 chr3 83967267 83967289 -75632494 + AT_rich Low_complexity Low_complexity 1 22 0 7 1225 836 75 17 0 chr3 83967567 83967687 -75632096 + (TTTC)n Simple_repeat Simple_repeat 2 123 0 7 1225 216 67 0 0 chr3 83967887 83967917 -75631866 + (TA)n Simple_repeat Simple_repeat 1 30 0 7 1225 458 372 12 70 chr3 83969296 83969640 -75630143 + MT2A LTR ERVL 3 326 -207 7 1225 284 267 86 33 chr3 83969668 83969681 -75630102 - CYRA11_Mm Unknown Y-chromosome -293 324 229 7 1225 717 174 8 0 chr3 83969681 83969813 -75629970 + URR1B DNA MER1_type 93 225 0 7 1225 237 263 41 41 chr3 83969843 83969966 -75629817 + MT2A LTR ERVL 334 456 -77 7 1225 908 248 40 15 chr3 83970466 83970667 -75629116 - ID_B1 SINE B4 -6 218 13 7 1225 218 167 39 59 chr3 83970723 83970825 -75628958 + (TA)n Simple_repeat Simple_repeat 2 101 0 7 1225 242 273 15 29 chr3 83970862 83970930 -75628853 + ID_B1 SINE B4 158 224 0 7 1225 378 0 0 0 chr3 83971215 83971257 -75628526 + (TG)n Simple_repeat Simple_repeat 1 42 0 7 1225 210 121 49 49 chr3 83972952 83973013 -75626770 + GA-rich Low_complexity Low_complexity 5 65 0 7 1225 264 198 24 179 chr3 83973259 83973382 -75626401 - PB1D10 SINE Alu 0 117 14 7 1225 330 326 21 14 chr3 83973585 83973728 -75626055 + MLT1A1 LTR MaLR 1 144 -264 7 1225 296 259 12 12 chr3 83973878 83973964 -75625819 + MTE2a LTR MaLR 280 365 -14 7 1225 242 236 0 65 chr3 83973990 83974067 -75625716 + Tigger7 DNA MER2_type 2354 2425 -66 7 1225 2073 125 25 6 chr3 83974557 83974879 -75624904 + ORR1A4 LTR MaLR 1 328 -1 7 1225 1225 48 0 0 chr3 83975083 83975229 -75624554 + B1_Mus2 SINE Alu 2 147 0 7 1225 279 79 0 0 chr3 83976106 83976144 -75623639 + (GAAA)n Simple_repeat Simple_repeat 2 39 0 7 1225 198 0 0 0 chr3 83976292 83976314 -75623469 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 7 1225 887 224 68 19 chr3 83977443 83977648 -75622135 - B3 SINE B2 -1 215 1 7 1225 24 0 0 0 chr3 83979109 83979133 -75620650 + AT_rich Low_complexity Low_complexity 1 24 0 7 1225 216 0 0 0 chr3 83979597 83979621 -75620162 + (T)n Simple_repeat Simple_repeat 1 24 0 7 1225 204 320 112 24 chr3 83980207 83980332 -75619451 - MIRb SINE MIR -70 198 63 7 1225 342 0 0 0 chr3 83981151 83981189 -75618594 + (T)n Simple_repeat Simple_repeat 1 38 0 7 1225 288 213 0 53 chr3 83981269 83981383 -75618400 + (TATATG)n Simple_repeat Simple_repeat 1 108 0 7 1225 240 59 0 0 chr3 83981844 83981878 -75617905 + (CA)n Simple_repeat Simple_repeat 2 35 0 7 1225 787 70 0 17 chr3 83982702 83982819 -75616964 + (TG)n Simple_repeat Simple_repeat 1 115 0 7 1225 216 217 146 16 chr3 83982834 83982909 -75616874 - PB1D10 SINE Alu -15 105 20 7 1225 25 0 0 0 chr3 83983126 83983151 -75616632 + AT_rich Low_complexity Low_complexity 1 25 0 7 1225 253 292 0 14 chr3 83983503 83983576 -75616207 + PB1 SINE Alu 53 124 -3 7 1225 186 167 0 0 chr3 83984124 83984160 -75615623 + (CACG)n Simple_repeat Simple_repeat 4 39 0 7 1225 2016 181 12 22 chr3 83984313 83984715 -75615068 + RMER10B LTR ERVL 1 398 0 7 1225 288 241 31 169 chr3 83985438 83985598 -75614185 + RSINE1 SINE B4 28 165 0 7 1225 279 296 0 0 chr3 83986093 83986164 -75613619 + ID4 SINE ID 1 71 -12 7 1225 758 168 0 14 chr3 83986418 83986563 -75613220 + B1_Mus1 SINE Alu 6 148 0 7 1225 215 143 41 0 chr3 83986567 83986616 -75613167 + A-rich Low_complexity Low_complexity 2 52 0 7 1225 338 224 26 8 chr3 83986604 83986721 -75613062 + GA-rich Low_complexity Low_complexity 3 121 0 7 1225 834 11 0 0 chr3 83986723 83986818 -75612965 + (GGAAA)n Simple_repeat Simple_repeat 2 96 0 7 1225 387 212 30 127 chr3 83987402 83987506 -75612277 + B1_Mur2 SINE Alu 12 116 -33 7 1225 1350 87 16 16 chr3 83987506 83987693 -75612090 + B2_Mm2 SINE B2 3 189 -6 7 1225 387 208 29 137 chr3 83987693 83987737 -75612046 + B1_Mur2 SINE Alu 117 146 -3 7 1225 195 162 0 0 chr3 83987738 83987775 -75612008 + (CAT)n Simple_repeat Simple_repeat 3 39 0 7 1225 824 172 86 0 chr3 83987775 83987938 -75611845 + RMER20A LTR ERVK 340 516 0 7 1225 435 198 160 0 chr3 83987941 83988047 -75611736 - B3A SINE B2 -39 159 37 7 1225 326 329 38 139 chr3 83988276 83988376 -75611407 + ORR1E LTR MaLR 8 105 -254 7 1225 3119 54 33 15 chr3 83988376 83988774 -75611009 + MTB_Mm LTR MaLR 1 405 -2 7 1225 326 329 38 139 chr3 83988774 83989012 -75610771 + ORR1E LTR MaLR 106 312 -47 7 1225 834 11 0 0 chr3 83989270 83989365 -75610418 + (TATTG)n Simple_repeat Simple_repeat 1 95 0 7 1225 507 60 0 0 chr3 83989365 83989432 -75610351 + (CCTAT)n Simple_repeat Simple_repeat 4 70 0 7 1225 256 325 73 32 chr3 83990035 83990159 -75609624 - MER63D DNA AcHobo -677 384 256 7 1225 797 141 0 0 chr3 83990363 83990491 -75609292 - B1_Mur2 SINE Alu -21 128 1 7 1225 372 208 7 143 chr3 83990366 83990506 -75609277 - MT2B LTR ERVL -330 271 151 7 1225 290 274 0 14 chr3 83990583 83990657 -75609126 - RSINE1 SINE B4 -90 75 3 7 1225 224 350 0 100 chr3 83991116 83991246 -75608537 + L2c LINE L2 3261 3377 -10 7 1225 1379 256 3 13 chr3 83991317 83991697 -75608086 + L1M2 LINE L1 4393 4768 -1375 7 1225 227 264 62 52 chr3 83991721 83991817 -75607966 + ID_B1 SINE B4 78 174 -50 7 1225 310 233 61 97 chr3 83991736 83991850 -75607933 + PB1D10 SINE Alu 8 117 0 7 1225 804 297 241 5 chr3 83991855 83992257 -75607526 + L1M2 LINE L1 4789 5285 -858 7 1225 228 181 233 14 chr3 83992288 83992361 -75607422 - L1M2 LINE L1 -943 5200 5112 7 1225 258 207 35 0 chr3 83992589 83992647 -75607136 + RSINE1 SINE B4 85 144 -21 7 1225 186 43 0 0 chr3 83992656 83992679 -75607104 + (TAA)n Simple_repeat Simple_repeat 2 24 0 7 1225 821 202 186 0 chr3 83992688 83992995 -75606788 + L1M2 LINE L1 5312 5675 -493 7 1225 228 154 26 0 chr3 83992997 83993036 -75606747 + L1M2 LINE L1 5827 5866 -425 7 1225 369 0 0 0 chr3 83993682 83993723 -75606060 + (T)n Simple_repeat Simple_repeat 1 41 0 7 1225 373 281 67 39 chr3 83996418 83996596 -75603187 - MER20 DNA MER1_type -35 184 2 7 1225 577 303 107 69 chr3 83997443 83997519 -75602264 - Charlie1b DNA MER1_type -4 519 450 7 1225 622 226 51 0 chr3 83997519 83997656 -75602127 + B1_Mur2 SINE Alu 1 144 -5 7 1225 577 303 107 69 chr3 83997656 83998026 -75601757 - Charlie1b DNA MER1_type -74 449 56 7 1225 198 0 0 0 chr3 83998056 83998078 -75601705 + (TGGGGG)n Simple_repeat Simple_repeat 2 23 0 7 1225 288 333 42 109 chr3 83998132 83998297 -75601486 + MIRm SINE MIR 52 205 -57 7 1225 265 227 0 57 chr3 83999055 83999125 -75600658 - ID4 SINE ID -1 82 17 7 1225 586 231 64 29 chr3 84000297 84000459 -75599324 - B3 SINE B2 -22 176 1 1 1225 636 183 8 38 chr3 84000512 84000643 -75599140 + L1M4 LINE L1 1197 1323 -5581 2 1225 298 342 62 9 chr3 84000724 84000836 -75598947 - PB1D9 SINE Alu -1 119 2 3 1225 775 255 31 71 chr3 84000909 84001005 -75598778 + B3 SINE B2 1 100 -116 4 1225 2577 129 13 0 chr3 84001005 84001393 -75598390 + ORR1B1 LTR MaLR 2 394 0 5 1225 775 255 31 71 chr3 84001393 84001520 -75598263 + B3 SINE B2 101 215 -1 4 1225 421 267 34 76 chr3 84001559 84001822 -75597961 + L1M4 LINE L1 1475 1729 -5175 2 1225 343 277 124 9 chr3 84001889 84002002 -75597781 + RSINE1 SINE B4 3 128 -37 6 1225 432 0 0 0 chr3 84002017 84002065 -75597718 + (CA)n Simple_repeat Simple_repeat 1 48 0 7 1225 404 272 77 6 chr3 84002082 84002252 -75597531 + L1M4 LINE L1 1928 2109 -4899 2 1225 436 307 9 0 chr3 84002313 84002427 -75597356 + PB1D10 SINE Alu 3 117 0 8 1225 669 229 21 63 chr3 84002433 84002624 -75597159 + B3A SINE B2 2 184 -14 9 1225 286 319 14 0 chr3 84002685 84002757 -75597026 + ID4_ SINE ID 2 74 -9 1 1225 365 308 59 22 chr3 84002770 84002906 -75596877 + L1M4 LINE L1 3108 3248 -3758 2 1225 624 290 34 4 chr3 84002958 84003197 -75596586 + L1M4 LINE L1 4092 4337 -2669 2 1225 218 262 48 16 chr3 84003331 84003393 -75596390 + B1_Mur2 SINE Alu 85 148 -1 1 1225 626 58 11 0 chr3 84003401 84003488 -75596295 + (TAAA)n Simple_repeat Simple_repeat 1 88 0 1 1225 261 0 0 0 chr3 84003780 84003809 -75595974 + (CA)n Simple_repeat Simple_repeat 2 30 0 1 1225 1127 78 5 27 chr3 84003810 84003994 -75595789 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 1 1225 1279 67 6 6 chr3 84004007 84004187 -75595596 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 1 1225 192 125 0 0 chr3 84004279 84004311 -75595472 + (A)n Simple_repeat Simple_repeat 1 32 0 1 1225 377 224 125 58 chr3 84005522 84005626 -75594157 - PB1D9 SINE Alu 0 120 10 1 1225 373 288 34 8 chr3 84005904 84006023 -75593760 - PB1 SINE Alu -3 124 3 1 1225 184 89 64 43 chr3 84006609 84006656 -75593127 + (CATATA)n Simple_repeat Simple_repeat 2 49 0 1 1225 225 94 0 0 chr3 84006754 84006786 -75592997 + (CAAT)n Simple_repeat Simple_repeat 3 34 0 1 1225 260 224 17 17 chr3 84007112 84007171 -75592612 - RSINE1 SINE B4 -105 60 2 2 1225 864 101 20 7 chr3 84007451 84007555 -75592228 + (TTTC)n Simple_repeat Simple_repeat 2 106 0 2 1225 1070 121 11 0 chr3 84007555 84007729 -75592054 + (TCCC)n Simple_repeat Simple_repeat 3 178 0 2 1225 864 101 20 7 chr3 84007729 84007773 -75592010 + (TTTC)n Simple_repeat Simple_repeat 1 45 0 2 1225 380 100 0 0 chr3 84007773 84007823 -75591960 + (TCCC)n Simple_repeat Simple_repeat 2 51 0 2 1225 306 0 0 0 chr3 84007851 84007885 -75591898 + (TTGG)n Simple_repeat Simple_repeat 2 35 0 2 1225 274 159 229 21 chr3 84007885 84007975 -75591808 - PB1D9 SINE Alu -7 113 4 2 1225 219 69 0 0 chr3 84008097 84008126 -75591657 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 2 1225 215 222 22 0 chr3 84008126 84008171 -75591612 - B1F SINE Alu -10 139 94 2 1225 771 189 212 22 chr3 84008507 84008686 -75591097 - B3 SINE B2 0 216 4 2 1225 398 324 7 27 chr3 84009961 84010107 -75589676 + B1_Mur1 SINE Alu 2 144 -5 3 1225 291 254 75 0 chr3 84010469 84010536 -75589247 + ID4_ SINE ID 3 74 -9 3 1225 282 95 0 0 chr3 84010538 84010580 -75589203 + (CAT)n Simple_repeat Simple_repeat 2 43 0 3 1225 280 277 0 84 chr3 84010591 84010632 -75589151 - ID4_ SINE ID -7 76 41 3 1225 1879 161 17 103 chr3 84010632 84010912 -75588871 + ORR1D1 LTR MaLR 1 260 -114 3 1225 402 21 0 0 chr3 84010912 84010959 -75588824 + (CCTG)n Simple_repeat Simple_repeat 4 50 0 3 1225 1879 161 17 103 chr3 84010959 84011087 -75588696 + ORR1D1 LTR MaLR 261 374 0 3 1225 280 277 0 84 chr3 84011087 84011116 -75588667 - ID4_ SINE ID -43 40 12 3 1225 425 187 65 21 chr3 84011136 84011229 -75588554 - PB1D7 SINE Alu -10 110 14 3 1225 243 307 189 44 chr3 84011251 84011479 -75588304 - MIR SINE MIR -1 261 1 3 1225 402 309 26 19 chr3 84012982 84013137 -75586646 - MIR SINE MIR -78 184 29 3 1225 239 282 127 0 chr3 84013153 84013224 -75586559 + ID4_ SINE ID 2 81 -2 3 1225 186 315 181 20 chr3 84013677 84013826 -75585957 + L2 LINE L2 2396 2568 -851 4 1225 313 247 12 47 chr3 84014557 84014642 -75585141 - RSINE1 SINE B4 -83 82 1 4 1225 271 256 139 13 chr3 84014657 84014736 -75585047 - MER34A LTR ERV1 -115 456 368 4 1225 303 175 0 0 chr3 84015317 84015374 -75584409 + GA-rich Low_complexity Low_complexity 3 59 0 4 1225 799 246 38 10 chr3 84015751 84015960 -75583823 - B3 SINE B2 -1 215 1 4 1225 344 231 26 0 chr3 84016001 84016079 -75583704 + Lx9 LINE L1 7394 7473 -171 4 1225 28 29 0 0 chr3 84016380 84016415 -75583368 + AT_rich Low_complexity Low_complexity 1 35 0 4 1225 357 294 92 35 chr3 84016712 84016853 -75582930 - MIRm SINE MIR -126 150 2 4 1225 186 43 0 0 chr3 84016953 84016976 -75582807 + (TTA)n Simple_repeat Simple_repeat 1 23 0 4 153 652 239 85 0 chr3 84017077 84017253 -75582530 + B3A SINE B2 2 192 -6 4 1226 977 157 0 0 chr3 84017259 84017406 -75582377 + B1_Mus2 SINE Alu 1 147 0 5 1226 274 220 185 11 chr3 84017550 84017642 -75582141 - RSINE1 SINE B4 -22 143 36 5 1226 645 114 107 58 chr3 84018228 84018349 -75581434 - B1_Mus1 SINE Alu 0 148 22 5 1226 317 266 115 21 chr3 84018630 84018726 -75581057 - PB1D10 SINE Alu -10 107 3 5 1226 318 251 61 39 chr3 84019010 84019138 -75580645 + MLT1A LTR MaLR 5 142 -232 5 1226 537 251 55 85 chr3 84019421 84019621 -75580162 + MLT1A LTR MaLR 173 366 -8 5 1226 550 237 26 0 chr3 84020564 84020678 -75579105 - PB1D10 SINE Alu 0 117 1 5 1226 21 57 0 0 chr3 84020749 84020784 -75578999 + AT_rich Low_complexity Low_complexity 1 35 0 5 1226 713 265 149 24 chr3 84020987 84021242 -75578541 + B4A SINE B4 1 287 -5 5 1226 326 106 0 0 chr3 84021453 84021500 -75578283 - HAL1-3A_ME LINE L1 -836 2022 1976 5 1226 258 106 0 0 chr3 84021503 84021550 -75578233 + (TC)n Simple_repeat Simple_repeat 2 48 0 5 1226 477 0 0 0 chr3 84021549 84021602 -75578181 + (TG)n Simple_repeat Simple_repeat 2 54 0 6 1226 237 83 0 0 chr3 84025951 84025987 -75573796 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 6 1226 527 187 0 0 chr3 84025990 84026081 -75573702 - PB1D9 SINE Alu -13 107 17 6 1226 405 172 0 0 chr3 84026103 84026196 -75573587 + T-rich Low_complexity Low_complexity 1 93 0 6 1226 1153 62 21 0 chr3 84026197 84026342 -75573441 - B1_Mus1 SINE Alu 0 148 1 6 1226 369 289 81 120 chr3 84026350 84026412 -75573371 - L1MB8 LINE L1 0 6178 6116 6 1226 553 286 7 7 chr3 84026412 84026553 -75573230 + B1F SINE Alu 1 141 -8 6 1226 369 289 81 120 chr3 84026553 84026909 -75572874 - L1MB8 LINE L1 -63 6115 5771 6 1226 369 0 0 0 chr3 84026909 84026950 -75572833 + (TTTA)n Simple_repeat Simple_repeat 2 42 0 6 1226 838 89 87 24 chr3 84026953 84027079 -75572704 - B1_Mus1 SINE Alu -14 134 1 6 1226 369 289 81 120 chr3 84027079 84027189 -75572594 - L1MB8 LINE L1 -408 5770 5666 6 1226 198 339 42 89 chr3 84027415 84027629 -75572154 - L2c LINE L2 -2 3385 3182 6 1226 238 296 94 77 chr3 84027869 84027986 -75571797 + ORR1E LTR MaLR 56 174 -185 7 1226 940 257 79 78 chr3 84028018 84028443 -75571340 + RLTR11A2 LTR ERVK 1 423 -18 7 1226 186 258 152 0 chr3 84028962 84029028 -75570755 - MIRc SINE MIR -100 168 93 7 1226 1888 162 26 20 chr3 84029355 84029707 -75570076 - ORR1B1 LTR MaLR 0 394 41 7 1226 268 331 146 20 chr3 84029938 84030089 -75569694 - L3 LINE CR1 -493 3996 3827 7 1226 760 314 150 62 chr3 84030444 84030865 -75568918 - MLT1C LTR MaLR -9 458 1 7 1226 518 123 0 0 chr3 84031074 84031147 -75568636 + B2_Mm2 SINE B2 2 74 -121 7 1226 262 208 73 119 chr3 84031147 84031163 -75568620 + B4 SINE B4 2 85 -207 7 1226 567 200 112 0 chr3 84031163 84031288 -75568495 + B2_Mm2 SINE B2 2 140 -55 7 1226 905 267 49 59 chr3 84031521 84031808 -75567975 + B4 SINE B4 3 286 -6 7 1226 336 141 25 25 chr3 84031949 84032029 -75567754 + T-rich Low_complexity Low_complexity 2 81 0 8 1226 534 70 0 0 chr3 84032030 84032101 -75567682 + (TCCCC)n Simple_repeat Simple_repeat 3 73 0 8 1226 564 73 0 0 chr3 84032101 84032183 -75567600 - L1_Mus3 LINE L1 -2 6636 6555 8 1226 199 26 0 95 chr3 84032467 84032509 -75567274 + (CAAAA)n Simple_repeat Simple_repeat 3 40 0 8 1226 368 40 0 20 chr3 84032523 84032574 -75567209 + (CAAAC)n Simple_repeat Simple_repeat 5 54 0 8 1226 212 158 0 17 chr3 84032820 84032878 -75566905 + T-rich Low_complexity Low_complexity 4 60 0 8 1226 642 14 0 0 chr3 84032931 84033003 -75566780 - tRNA-Gly-GGY tRNA tRNA -2 72 1 8 1226 560 254 82 82 chr3 84033492 84033724 -75566059 - Tigger7 DNA MER2_type -9 2482 2251 8 1226 870 307 114 34 chr3 84033714 84034092 -75565691 - Tigger7 DNA MER2_type -2063 428 21 8 1226 778 297 14 5 chr3 84034059 84034272 -75565511 + MTD LTR MaLR 25 239 -180 8 1226 322 231 111 40 chr3 84034418 84034544 -75565239 + B1F1 SINE Alu 1 135 -14 8 1226 212 264 19 0 chr3 84035349 84035402 -75564381 - L2a LINE L2 -5 3421 3368 9 1226 228 339 99 53 chr3 84035584 84035715 -75564068 + MIRb SINE MIR 14 150 -118 9 1226 409 295 95 67 chr3 84035894 84036221 -75563562 - MER58B DNA MER1_type -1 340 5 9 1226 1209 56 0 0 chr3 84036788 84036931 -75562852 - B1_Mus1 SINE Alu -5 143 1 9 1226 33 0 0 0 chr3 84037119 84037152 -75562631 + AT_rich Low_complexity Low_complexity 1 33 0 9 1226 2287 148 16 5 chr3 84037371 84037751 -75562032 - ORR1C2 LTR MaLR 0 384 1 9 1226 827 271 29 5 chr3 84038060 84038264 -75561519 - B3 SINE B2 0 216 8 9 1226 261 0 0 0 chr3 84038267 84038296 -75561487 + (CAAT)n Simple_repeat Simple_repeat 4 32 0 9 1226 227 286 73 80 chr3 84038528 84038665 -75561118 + RMER21B LTR ERV1 679 814 -28 9 1226 199 247 81 69 chr3 84038796 84038883 -75560900 - L3 LINE CR1 -7 4482 4395 9 1226 507 140 38 19 chr3 84039761 84039921 -75559862 + (TG)n Simple_repeat Simple_repeat 1 163 0 1 1226 1082 102 0 7 chr3 84040193 84040341 -75559442 + B1_Mus1 SINE Alu 2 148 0 1 1226 589 140 100 27 chr3 84040453 84040563 -75559220 - B3 SINE B2 -97 119 2 1 1226 561 218 161 0 chr3 84040563 84040683 -75559100 - B1_Mur1 SINE Alu -8 141 2 1 1226 847 299 34 34 chr3 84040683 84040915 -75558868 - B4A SINE B4 -60 232 1 1 1226 1714 201 44 8 chr3 84041796 84042162 -75557621 + MTEb LTR MaLR 1 379 0 1 1226 310 218 12 93 chr3 84042513 84042599 -75557184 + ID4_ SINE ID 3 81 -2 1 1226 1480 63 0 11 chr3 84042941 84043132 -75556651 + B2_Mm2 SINE B2 4 192 -3 1 1226 1917 202 67 20 chr3 84043191 84043594 -75556189 - Lx6 LINE L1 0 7460 7039 1 1226 644 230 101 0 chr3 84043612 84043760 -75556023 - RSINE1 SINE B4 0 165 3 1 1226 721 148 107 0 chr3 84044023 84044145 -75555638 + B1_Mus1 SINE Alu 1 135 -13 1 1226 204 175 31 31 chr3 84044161 84044226 -75555557 + (TTTA)n Simple_repeat Simple_repeat 4 68 0 1 1226 1379 51 0 6 chr3 84044264 84044440 -75555343 - L1Md_F3 LINE L1 -14 6570 6396 1 1226 803 249 20 5 chr3 84044463 84044661 -75555122 - B3 SINE B2 -14 202 2 1 1226 297 0 0 0 chr3 84044843 84044876 -75554907 + (TC)n Simple_repeat Simple_repeat 1 33 0 1 1226 674 234 15 0 chr3 84044898 84045035 -75554748 - B1_Mur1 SINE Alu -5 144 6 1 1226 280 189 19 0 chr3 84045354 84045407 -75554376 + B4A SINE B4 1 54 -238 1 1226 410 327 10 0 chr3 84045417 84045518 -75554265 + B4A SINE B4 191 292 0 1 1226 262 262 0 116 chr3 84045458 84045553 -75554230 + B3A SINE B2 109 192 -6 1 1226 1117 147 56 23 chr3 84046753 84046969 -75552814 + URR1B DNA MER1_type 2 224 -1 1 1226 446 303 119 88 chr3 84048145 84048499 -75551284 + MLT1A0 LTR MaLR 1 365 0 1 1226 229 312 25 12 chr3 84048956 84049037 -75550746 - ID4_ SINE ID 0 83 2 1 1226 771 251 112 10 chr3 84049070 84049267 -75550516 - ID_B1 SINE B4 -5 219 3 1 1226 420 341 83 67 chr3 84049504 84049865 -75549918 + MLT1A1 LTR MaLR 42 408 0 1 1226 596 186 0 0 chr3 84050293 84050395 -75549388 - PB1D10 SINE Alu -14 103 2 1 1226 380 344 81 70 chr3 84051290 84051562 -75548221 + MLT2B5 LTR ERVL 174 448 -153 1 1226 502 262 214 0 chr3 84052502 84052689 -75547094 - Tigger5 DNA MER2_type -1 2405 2179 1 1226 368 325 42 103 chr3 84052765 84052869 -75546914 - Tigger5 DNA MER2_type -2206 200 103 1 1226 855 239 9 62 chr3 84052869 84053096 -75546687 + B3 SINE B2 2 216 0 1 1226 368 325 42 103 chr3 84053096 84053204 -75546579 - Tigger5 DNA MER2_type -2304 102 1 1 1226 416 218 322 6 chr3 84053223 84053394 -75546389 + MLT1C LTR MaLR 115 339 -128 1 1226 1528 147 283 30 chr3 84053645 84053981 -75545802 + MTC LTR MaLR 1 421 0 1 1226 271 280 16 3 chr3 84054012 84054090 -75545693 - ID4 SINE ID -5 78 1 1 1226 396 0 0 0 chr3 84054649 84054693 -75545090 + (CA)n Simple_repeat Simple_repeat 1 44 0 1 1226 297 0 0 0 chr3 84054693 84054725 -75545058 + (GA)n Simple_repeat Simple_repeat 2 34 0 1 1226 1240 125 11 5 chr3 84055051 84055236 -75544547 - B2_Mm2 SINE B2 -9 186 1 1 1226 349 295 11 0 chr3 84055307 84055402 -75544381 - ID_B1 SINE B4 -8 216 121 1 1226 295 267 47 0 chr3 84055326 84055412 -75544371 - B1_Mus1 SINE Alu -31 117 28 1 1226 241 193 35 17 chr3 84055996 84056054 -75543729 + ID4_ SINE ID 6 64 -19 1 1226 518 0 16 0 chr3 84056059 84056121 -75543662 + (GA)n Simple_repeat Simple_repeat 1 63 0 1 1226 614 213 31 8 chr3 84056125 84056253 -75543530 + B1_Mur1 SINE Alu 1 131 -18 1 1226 224 341 12 0 chr3 84056494 84056576 -75543207 - ID4 SINE ID 0 83 1 1 1226 359 245 19 87 chr3 84058509 84058612 -75541171 - PB1D10 SINE Alu 0 117 22 1 1226 1717 209 56 206 chr3 84058692 84059336 -75540447 + RMER15 LTR ERVL 29 575 0 1 1226 225 274 54 14 chr3 84060255 84060329 -75539454 - ID4_ SINE ID -6 77 1 1 1226 230 0 0 32 chr3 84060480 84060511 -75539272 + (TATAA)n Simple_repeat Simple_repeat 5 34 0 1 1226 696 249 96 30 chr3 84060820 84061019 -75538764 + B3 SINE B2 1 212 -4 1 1226 536 298 93 45 chr3 84061082 84061328 -75538455 - MER2 DNA MER2_type -6 339 82 1 1226 24 0 0 0 chr3 84062404 84062428 -75537355 + GC_rich Low_complexity Low_complexity 1 24 0 1 1226 180 0 0 0 chr3 84064010 84064030 -75535753 + (C)n Simple_repeat Simple_repeat 1 20 0 1 1226 462 251 89 41 chr3 84064873 84065150 -75534633 - MLT1C LTR MaLR 0 390 97 1 1226 238 329 206 19 chr3 84065158 84065313 -75534470 - ORR1E LTR MaLR 0 359 176 1 1226 374 189 31 72 chr3 84065524 84065621 -75534162 - MLT1C LTR MaLR -372 95 3 1 1226 306 260 14 0 chr3 84066210 84066283 -75533500 - ID4 SINE ID -8 75 2 1 1226 393 211 60 68 chr3 84066323 84066440 -75533343 - PB1 SINE Alu -11 116 1 1 1226 338 221 28 34 chr3 84067056 84067234 -75532549 + (TATG)n Simple_repeat Simple_repeat 2 178 0 1 1226 296 311 0 26 chr3 84069088 84069164 -75530619 + Tigger7 DNA MER2_type 21 94 -2397 1 1226 372 22 0 0 chr3 84070237 84070282 -75529501 + (TG)n Simple_repeat Simple_repeat 1 45 0 1 1226 1734 169 17 17 chr3 84071508 84071863 -75527920 - RLTR15 LTR ERVK 0 359 5 1 1226 203 205 228 43 chr3 84072014 84072106 -75527677 - MIRb SINE MIR -134 134 26 1 1226 366 23 0 0 chr3 84072333 84072376 -75527407 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 1226 852 361 117 29 chr3 84072376 84072887 -75526896 + MER21B LTR ERV1 24 579 -284 1 1226 203 61 30 0 chr3 84073219 84073252 -75526531 + (CACAC)n Simple_repeat Simple_repeat 5 38 0 1 1226 180 111 0 0 chr3 84073586 84073613 -75526170 + (TGGA)n Simple_repeat Simple_repeat 2 28 0 1 1226 351 60 0 0 chr3 84075551 84075601 -75524182 + (GA)n Simple_repeat Simple_repeat 1 50 0 1 1226 351 297 93 45 chr3 84076033 84076234 -75523549 - MTEa LTR MaLR -13 366 134 1 1226 242 338 122 0 chr3 84076248 84076322 -75523461 - MTEa LTR MaLR -276 83 1 1 1226 1331 245 87 21 chr3 84076336 84076715 -75523068 + MTD LTR MaLR 1 404 -15 1 1226 241 284 0 13 chr3 84076931 84077006 -75522777 + Lx8 LINE L1 5855 5928 -1545 1 1226 286 211 18 0 chr3 84077044 84077153 -75522630 + (TG)n Simple_repeat Simple_repeat 1 111 0 1 1226 566 51 13 0 chr3 84077153 84077231 -75522552 + (CA)n Simple_repeat Simple_repeat 1 79 0 1 1226 583 278 41 41 chr3 84077384 84077579 -75522204 - B3A SINE B2 -1 197 3 1 1226 2554 147 10 7 chr3 84078140 84078552 -75521231 + MTC LTR MaLR 9 421 0 1 1226 361 274 33 66 chr3 84079394 84079515 -75520268 + L1MD LINE L1 5112 5228 -918 1 1226 807 201 0 14 chr3 84079567 84079708 -75520075 + B1_Mur3 SINE Alu 2 140 -9 1 1226 526 293 170 8 chr3 84079719 84080077 -75519706 + L1M5 LINE L1 5324 5739 -425 1 1226 237 368 0 0 chr3 84080257 84080333 -75519450 + ID4_ SINE ID 3 78 -5 1 1226 448 286 8 8 chr3 84080347 84080474 -75519309 + PB1 SINE Alu 1 127 0 1 1226 1191 270 36 4 chr3 84081580 84081859 -75517924 - B4A SINE B4 0 292 5 1 1226 323 253 34 57 chr3 84081861 84081949 -75517834 - PB1D9 SINE Alu -2 118 33 1 1226 261 256 58 11 chr3 84081956 84082043 -75517740 - MTEb LTR MaLR -10 369 279 1 1226 473 231 39 0 chr3 84083308 84083412 -75516371 - MER20 DNA MER1_type -2 217 110 1 1226 316 269 33 16 chr3 84083481 84083613 -75516170 + PB1D9 SINE Alu 10 147 -2 1 1226 230 319 28 0 chr3 84083662 84083734 -75516049 - MER20 DNA MER1_type -144 75 2 1 1226 420 97 0 0 chr3 84083948 84084010 -75515773 + (TG)n Simple_repeat Simple_repeat 1 62 0 1 1226 189 0 0 0 chr3 84084010 84084031 -75515752 + (TTG)n Simple_repeat Simple_repeat 2 22 0 1 1226 232 346 0 0 chr3 84084202 84084283 -75515500 - ID2 SINE ID 0 83 3 1 1226 429 221 126 53 chr3 84084622 84084815 -75514968 + MLT1A LTR MaLR 1 200 -208 1 1226 365 295 45 67 chr3 84084866 84085044 -75514739 + MLT1A LTR MaLR 186 359 -31 1 1226 231 358 0 0 chr3 84085316 84085397 -75514386 - ID4 SINE ID -1 82 2 1 1226 184 179 0 0 chr3 84085803 84085831 -75513952 + MIRc SINE MIR 121 148 -120 1 1226 967 203 66 5 chr3 84086717 84086915 -75512868 + B3 SINE B2 1 210 -6 1 1226 261 0 0 0 chr3 84087314 84087343 -75512440 + (CACCC)n Simple_repeat Simple_repeat 3 31 0 1 1226 303 347 171 27 chr3 84087950 84088317 -75511466 + MLT1J LTR MaLR 93 512 0 1 1226 873 127 19 0 chr3 84088458 84088615 -75511168 + (TCCC)n Simple_repeat Simple_repeat 1 160 0 1 1226 253 254 165 8 chr3 84088643 84088770 -75511013 - L1MC4 LINE L1 -201 7841 7695 1 1226 264 311 0 0 chr3 84088871 84088932 -75510851 - ID4 SINE ID -22 61 1 1 1226 284 232 0 18 chr3 84090755 84090812 -75508971 + ID_B1 SINE B4 40 95 -129 1 1226 233 314 29 0 chr3 84091191 84091261 -75508522 + tRNA-Ala-GCY_ tRNA tRNA 1 72 -3 1 1226 960 229 128 8 chr3 84091274 84091516 -75508267 + B4A SINE B4 5 275 -17 1 1226 1428 24 0 0 chr3 84091517 84091685 -75508098 + (GGGAGA)n Simple_repeat Simple_repeat 2 169 0 1 1226 2380 164 7 77 chr3 84092133 84092493 -75507290 - MTC LTR MaLR -8 413 78 1 1226 756 131 127 30 chr3 84092493 84092627 -75507156 - B1_Mus2 SINE Alu 0 147 1 1 1226 2380 164 7 77 chr3 84092627 84092708 -75507075 - MTC LTR MaLR -344 77 3 1 1226 22 35 0 0 chr3 84092734 84092763 -75507020 + AT_rich Low_complexity Low_complexity 1 29 0 1 1226 204 202 25 25 chr3 84092848 84092929 -75506854 + CT-rich Low_complexity Low_complexity 1 81 0 1 1226 851 246 17 2 chr3 84093360 84093559 -75506224 + B3A SINE B2 4 202 -14 1 1226 892 43 0 17 chr3 84093617 84093735 -75506048 + B1_Mm SINE Alu 32 147 0 2 1226 276 77 0 0 chr3 84094311 84094350 -75505433 + (TATG)n Simple_repeat Simple_repeat 4 42 0 2 1226 785 279 50 39 chr3 84094386 84094666 -75505117 - B4A SINE B4 -8 284 2 2 1226 326 305 42 0 chr3 84094813 84094908 -75504875 + PB1D10 SINE Alu 5 103 -14 2 1226 435 68 0 0 chr3 84094908 84094967 -75504816 + (CAAG)n Simple_repeat Simple_repeat 4 62 0 2 1226 324 0 0 0 chr3 84095250 84095286 -75504497 + (TC)n Simple_repeat Simple_repeat 2 37 0 2 1226 234 0 0 0 chr3 84095286 84095311 -75504472 + (TG)n Simple_repeat Simple_repeat 1 26 0 2 1226 241 292 15 0 chr3 84095407 84095472 -75504311 + ID4_ SINE ID 2 67 -16 2 1226 315 0 0 0 chr3 84095473 84095508 -75504275 + (CA)n Simple_repeat Simple_repeat 2 36 0 2 1226 438 325 0 0 chr3 84095751 84095868 -75503915 + PB1D7 SINE Alu 3 119 -1 2 1226 496 311 100 62 chr3 84096749 84096909 -75502874 + B4A SINE B4 1 170 -122 2 1226 241 47 0 44 chr3 84096909 84096954 -75502829 + (CAGA)n Simple_repeat Simple_repeat 1 43 0 2 1226 496 311 100 62 chr3 84096954 84097053 -75502730 + B4A SINE B4 171 270 -22 2 1226 354 80 0 0 chr3 84097156 84097206 -75502577 + (CA)n Simple_repeat Simple_repeat 1 50 0 2 1226 309 293 84 118 chr3 84097397 84097441 -75502342 + ID_B1 SINE B4 53 224 0 2 1226 585 186 127 37 chr3 84097441 84097575 -75502208 + B1_Mus2 SINE Alu 1 146 -1 2 1226 241 206 32 0 chr3 84097651 84097714 -75502069 - ID4 SINE ID -15 68 4 2 1226 273 258 110 29 chr3 84097719 84097855 -75501928 - ZP3AR Satellite Satellite -16 196 50 2 1226 198 0 0 0 chr3 84098004 84098026 -75501757 + (CAAAA)n Simple_repeat Simple_repeat 1 22 0 2 1226 711 297 88 33 chr3 84099059 84099079 -75500704 - B4 SINE B4 -4 288 270 2 1226 297 0 0 0 chr3 84099079 84099112 -75500671 + (TG)n Simple_repeat Simple_repeat 2 34 0 2 1226 711 297 88 33 chr3 84099112 84099363 -75500420 - B4 SINE B4 -23 269 2 2 1226 1368 149 0 9 chr3 84099460 84099676 -75500107 + URR1B DNA MER1_type 12 225 0 2 1226 504 0 0 0 chr3 84099695 84099751 -75500032 + (TAGA)n Simple_repeat Simple_repeat 3 58 0 2 1226 262 274 29 19 chr3 84100055 84100159 -75499624 - L1MA7 LINE L1 -32 6259 6155 2 1226 792 246 87 5 chr3 84101148 84101344 -75498439 + B3 SINE B2 4 215 -1 2 1226 656 235 22 0 chr3 84101352 84101488 -75498295 + B1_Mur2 SINE Alu 5 143 -6 2 1226 414 0 0 0 chr3 84101488 84101534 -75498249 + (TG)n Simple_repeat Simple_repeat 1 46 0 2 1226 314 265 26 0 chr3 84101536 84101621 -75498162 + ID4 SINE ID 8 94 -58 2 1226 384 169 0 0 chr3 84101814 84101891 -75497892 + CT-rich Low_complexity Low_complexity 2 78 0 2 1226 198 0 0 0 chr3 84101888 84101910 -75497873 + (TC)n Simple_repeat Simple_repeat 2 23 0 2 1226 225 0 0 0 chr3 84102676 84102701 -75497082 + (T)n Simple_repeat Simple_repeat 1 25 0 2 1226 1420 178 55 172 chr3 84103153 84103588 -75496195 + ORR1C2 LTR MaLR 1 384 0 2 1226 809 241 36 66 chr3 84103785 84104149 -75495634 + L1MA6 LINE L1 5001 5353 -790 2 1226 2202 272 87 2 chr3 84104567 84105430 -75494353 + L1MA6 LINE L1 5359 6294 -6 2 1226 371 256 79 40 chr3 84106225 84106351 -75493432 + Charlie8 DNA MER1_type 31 161 -2267 2 1226 2014 170 42 6 chr3 84110492 84110853 -75488930 + ORR1D1 LTR MaLR 1 374 0 2 1226 195 213 258 16 chr3 84111372 84111434 -75488349 + L2a LINE L2 3348 3424 -2 2 1226 312 260 82 0 chr3 84112150 84112223 -75487560 - ID4 SINE ID -3 80 2 2 1226 339 338 77 50 chr3 84112613 84112834 -75486949 - ORR1E LTR MaLR -126 233 7 2 1226 2382 63 66 0 chr3 84113080 84113397 -75486386 - ORR1A1 LTR MaLR -8 338 1 2 1226 7539 108 25 10 chr3 84113397 84114501 -75485282 - ORR1A1-int LTR MaLR 0 1963 844 2 1226 405 267 197 60 chr3 84114520 84114600 -75485183 - RLTR21 LTR ERVK -197 1375 1275 2 1226 414 0 0 0 chr3 84114600 84114646 -75485137 + (CA)n Simple_repeat Simple_repeat 2 47 0 2 1226 5549 115 17 57 chr3 84114646 84115571 -75484212 - RMER12 LTR ERVK -434 888 1 2 1226 243 88 0 0 chr3 84115600 84115634 -75484149 + (CAGA)n Simple_repeat Simple_repeat 1 34 0 2 1226 261 311 128 0 chr3 84115739 84115935 -75483848 + L1MC4 LINE L1 6791 7011 -1031 2 1226 1483 49 22 0 chr3 84116666 84116849 -75482934 - B2_Mm2 SINE B2 -7 188 2 2 1226 333 296 0 0 chr3 84116898 84116980 -75482803 - ID4 SINE ID -66 86 5 2 1226 238 253 0 35 chr3 84117251 84117319 -75482464 + PB1 SINE Alu 73 147 -2 2 1226 272 300 0 0 chr3 84117327 84117397 -75482386 + ID4_ SINE ID 1 70 -13 2 1226 414 0 0 0 chr3 84117401 84117447 -75482336 + (CAAAA)n Simple_repeat Simple_repeat 2 47 0 2 1226 266 185 31 0 chr3 84118135 84118200 -75481583 + C-rich Low_complexity Low_complexity 2 68 0 2 1226 751 177 8 0 chr3 84118202 84118326 -75481457 - B1_Mus2 SINE Alu -6 141 17 2 1226 504 0 0 0 chr3 84118347 84118403 -75481380 + (CA)n Simple_repeat Simple_repeat 2 57 0 2 1226 385 339 110 46 chr3 84120606 84120958 -75478825 + RLTR26 LTR ERVK 1 407 -220 2 1226 2332 167 133 11 chr3 84120958 84121418 -75478365 + RLTR11A LTR ERVK 1 516 -12 2 1226 786 231 14 0 chr3 84121733 84121880 -75477903 + B3 SINE B2 1 149 -67 2 1226 446 211 122 0 chr3 84122375 84122465 -75477318 - B1_Mur2 SINE Alu -32 117 17 2 1226 229 320 130 30 chr3 84122383 84122483 -75477300 - B4 SINE B4 -99 193 84 2 1226 826 259 75 110 chr3 84122538 84122797 -75476986 - MLT2C2 LTR ERVL -2 395 119 2 1226 420 229 0 0 chr3 84122797 84122880 -75476903 + ID4_ SINE ID 1 83 0 2 1226 826 246 60 114 chr3 84122880 84123011 -75476772 - MLT2C2 LTR ERVL -346 118 1 2 1226 240 288 13 52 chr3 84123654 84123731 -75476052 - L2a LINE L2 0 3426 3353 2 1226 190 304 72 81 chr3 84123656 84123767 -75476016 - MIRm SINE MIR 0 276 167 2 1226 935 151 41 51 chr3 84124327 84124523 -75475260 + B2_Mm2 SINE B2 1 194 -1 2 1226 401 280 102 54 chr3 84124656 84124822 -75474961 + ORR1E LTR MaLR 2 175 -184 2 1226 2114 201 17 17 chr3 84124827 84125232 -75474551 - MTD LTR MaLR -13 406 2 2 1226 420 171 34 0 chr3 84125354 84125442 -75474341 + ORR1B2 LTR MaLR 1 91 -276 2 1226 334 176 0 68 chr3 84125409 84125482 -75474301 + ORR1B2 LTR MaLR 259 326 0 2 1226 2141 272 61 140 chr3 84125544 84125706 -75474077 + ORR1B2-int LTR MaLR 1 135 -1445 2 1226 920 170 205 0 chr3 84125706 84125877 -75473906 - B3 SINE B2 -10 206 1 2 1226 2141 272 61 140 chr3 84125877 84126774 -75473009 + ORR1B2-int LTR MaLR 136 977 -603 2 1226 399 278 0 53 chr3 84126998 84127093 -75472690 + B3A SINE B2 25 114 -84 2 1226 241 250 0 0 chr3 84127085 84127133 -75472650 + RLTR20A2 LTR ERVK 240 287 -281 2 1226 625 227 12 78 chr3 84127119 84127176 -75472607 + RLTR20A2 LTR ERVK 423 479 -99 2 1226 681 92 0 0 chr3 84127176 84127274 -75472509 + (TG)n Simple_repeat Simple_repeat 2 99 0 2 1226 625 227 12 78 chr3 84127274 84127383 -75472400 + RLTR20A2 LTR ERVK 480 577 -1 2 1226 394 144 48 9 chr3 84127760 84127865 -75471918 + CT-rich Low_complexity Low_complexity 1 109 0 2 1226 251 280 35 132 chr3 84128137 84128281 -75471502 + MER5A DNA MER1_type 38 167 -22 2 1226 198 0 0 0 chr3 84128768 84128790 -75470993 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 2 1226 936 224 70 16 chr3 84128967 84129225 -75470558 + ORR1E LTR MaLR 1 272 -87 2 1226 392 308 118 68 chr3 84129502 84129739 -75470044 + ORR1E LTR MaLR 6 254 -105 2 1226 607 270 71 49 chr3 84129830 84130275 -75469508 + L1MA8 LINE L1 4929 5367 -776 2 1226 319 288 124 55 chr3 84130277 84130479 -75469304 + B4A SINE B4 2 217 -75 2 1226 989 314 45 14 chr3 84130593 84131013 -75468770 + L1MA8 LINE L1 5347 5779 -389 2 1226 975 212 27 0 chr3 84131051 84131235 -75468548 + B3 SINE B2 9 197 -19 2 1226 1551 173 122 3 chr3 84131272 84131574 -75468209 - MTC LTR MaLR -26 395 58 2 1226 235 221 59 0 chr3 84131650 84131718 -75468065 + L1MA8 LINE L1 5864 5935 -356 2 1226 211 296 0 0 chr3 84131729 84131783 -75468000 + (CATATA)n Simple_repeat Simple_repeat 3 56 0 2 1226 231 167 0 0 chr3 84131962 84132004 -75467779 + (CA)n Simple_repeat Simple_repeat 1 42 0 2 1226 540 337 172 7 chr3 84132640 84132936 -75466847 + MER2 DNA MER2_type 1 345 0 2 1226 293 317 158 58 chr3 84133091 84133577 -75466206 - L2 LINE L2 -915 2504 1970 2 1226 268 384 10 10 chr3 84134251 84134351 -75465432 - L2 LINE L2 -2068 1351 1252 2 1226 228 297 0 26 chr3 84134410 84134486 -75465297 + ORR1E LTR MaLR 280 353 -26 2 1226 1334 51 74 0 chr3 84134586 84134762 -75465021 + B2_Mm2 SINE B2 1 189 -6 2 1226 799 309 62 4 chr3 84134802 84135078 -75464705 - B4 SINE B4 0 292 1 2 1226 266 306 87 24 chr3 84135464 84135591 -75464192 + MLT1C LTR MaLR 18 152 -353 2 1226 939 99 0 8 chr3 84135709 84135841 -75463942 - B1_Mus1 SINE Alu -17 131 1 2 1226 339 291 133 14 chr3 84136272 84136415 -75463368 + MLT1C LTR MaLR 304 463 -4 2 1226 1924 137 128 32 chr3 84136534 84136940 -75462843 + RLTR28 LTR ERVL 64 508 -16 2 1226 550 134 37 15 chr3 84137019 84137155 -75462628 + GA-rich Low_complexity Low_complexity 1 139 0 2 1226 665 304 92 78 chr3 84137809 84138155 -75461628 - MLT1A0 LTR MaLR -13 352 2 2 1226 186 395 65 12 chr3 84138869 84139038 -75460745 - L3 LINE CR1 -1215 3274 3097 2 1226 375 242 107 65 chr3 84139090 84139258 -75460525 + L1M5 LINE L1 5265 5439 -734 2 1226 291 114 0 0 chr3 84139660 84139704 -75460079 + (TTTA)n Simple_repeat Simple_repeat 2 45 0 2 1226 360 0 0 0 chr3 84139756 84139796 -75459987 + (CA)n Simple_repeat Simple_repeat 2 41 0 2 1226 727 221 12 25 chr3 84140139 84140301 -75459482 - ID_B1 SINE B4 -63 161 2 2 1226 300 27 0 0 chr3 84140679 84140716 -75459067 + (TAAAA)n Simple_repeat Simple_repeat 3 39 0 2 1226 281 47 23 0 chr3 84141046 84141089 -75458694 + (TTTTG)n Simple_repeat Simple_repeat 1 44 0 2 1226 727 169 154 0 chr3 84141089 84141219 -75458564 - B1_Mur4 SINE Alu 0 150 1 2 1226 207 0 0 0 chr3 84141243 84141266 -75458517 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2 1226 455 234 57 55 chr3 84141371 84141525 -75458258 + MIR SINE MIR 12 168 -108 2 1226 198 0 0 0 chr3 84141782 84141804 -75457979 + (G)n Simple_repeat Simple_repeat 1 22 0 2 1226 324 0 0 0 chr3 84142595 84142631 -75457152 + (TG)n Simple_repeat Simple_repeat 2 37 0 2 1226 22 0 0 0 chr3 84142657 84142679 -75457104 + AT_rich Low_complexity Low_complexity 1 22 0 3 1226 1969 180 52 15 chr3 84142807 84143213 -75456570 + MTC LTR MaLR 1 421 0 3 1226 236 30 0 29 chr3 84143369 84143403 -75456380 + (TTTTG)n Simple_repeat Simple_repeat 3 35 0 3 1226 464 191 133 0 chr3 84143403 84143508 -75456275 + B1_Mur4 SINE Alu 2 120 -30 3 1226 477 229 40 103 chr3 84143522 84143697 -75456086 + RSINE1 SINE B4 2 165 0 3 1226 360 111 0 0 chr3 84143720 84143774 -75456009 + (TAA)n Simple_repeat Simple_repeat 2 55 0 3 1226 446 262 48 32 chr3 84143792 84143918 -75455865 + B1F SINE Alu 22 149 0 3 1226 382 308 44 60 chr3 84144271 84144454 -75455329 - L1MCa LINE L1 -4527 1981 1802 3 1226 497 178 67 29 chr3 84144798 84144902 -75454881 - PB1D7 SINE Alu 0 120 13 3 1226 408 306 0 9 chr3 84146080 84146189 -75453594 + PB1D10 SINE Alu 1 108 -9 3 1226 243 305 0 0 chr3 84146214 84146273 -75453510 + ID4 SINE ID 25 83 0 3 1226 983 208 33 14 chr3 84146662 84146872 -75452911 + B3 SINE B2 1 214 -2 3 1226 183 365 0 0 chr3 84147344 84147407 -75452376 + MIRm SINE MIR 214 276 0 3 1226 281 301 58 136 chr3 84147771 84147925 -75451858 + B1F SINE Alu 7 148 -1 3 1227 468 350 48 10 chr3 84148685 84148893 -75450890 - MIR SINE MIR -35 227 12 3 1227 432 212 16 81 chr3 84150306 84150429 -75449354 + PB1D10 SINE Alu 3 117 0 3 1227 314 232 29 0 chr3 84151072 84151141 -75448642 - tRNA-Ala-GCY_ tRNA tRNA -3 72 2 3 1227 667 285 46 105 chr3 84152503 84152875 -75446908 + ORR1E LTR MaLR 1 350 -9 3 1227 244 316 50 30 chr3 84153329 84153430 -75446353 + MLT1B LTR MaLR 111 213 -177 3 1227 249 341 76 41 chr3 84154841 84155012 -75444771 + MLT1K LTR MaLR 39 215 -380 3 1227 473 47 16 0 chr3 84155218 84155282 -75444501 + (CA)n Simple_repeat Simple_repeat 2 66 0 3 1227 546 262 89 61 chr3 84156347 84156585 -75443198 + B4 SINE B4 64 274 -18 3 1227 755 236 35 56 chr3 84156645 84156850 -75442933 + B3A SINE B2 1 203 -13 3 1227 301 276 40 65 chr3 84156860 84156984 -75442799 - L1M3 LINE L1 -1558 4582 4462 3 1227 3268 53 2 5 chr3 84158207 84158604 -75441179 - MTA_Mm LTR MaLR 0 396 1 3 1227 198 0 0 0 chr3 84158629 84158651 -75441132 + (TTTTG)n Simple_repeat Simple_repeat 4 25 0 3 1227 708 74 0 0 chr3 84158959 84159067 -75440716 + (TG)n Simple_repeat Simple_repeat 2 109 0 3 1227 985 73 40 0 chr3 84159752 84159876 -75439907 + B1_Mus1 SINE Alu 1 129 -19 3 1227 292 22 44 0 chr3 84159876 84159921 -75439862 + (GA)n Simple_repeat Simple_repeat 1 47 0 3 1227 308 271 171 19 chr3 84159942 84160100 -75439683 - MER20 DNA MER1_type -37 182 1 3 1227 477 299 67 0 chr3 84160693 84160827 -75438956 + RSINE1 SINE B4 3 145 -20 3 1227 252 0 0 0 chr3 84160846 84160874 -75438909 + (CA)n Simple_repeat Simple_repeat 2 29 0 3 1227 563 304 108 0 chr3 84160926 84161074 -75438709 + B3A SINE B2 1 164 -34 3 1227 408 40 0 0 chr3 84161088 84161138 -75438645 + (CA)n Simple_repeat Simple_repeat 1 50 0 3 1227 258 293 0 109 chr3 84161714 84161806 -75437977 + MTE2a LTR MaLR 18 99 -280 3 1227 245 279 0 12 chr3 84161807 84161887 -75437896 + L1M2 LINE L1 3190 3268 -2875 3 1227 590 302 62 70 chr3 84161952 84162322 -75437461 + L1M2 LINE L1 3392 3758 -2385 3 1227 754 250 76 5 chr3 84162343 84162528 -75437255 - B3 SINE B2 -1 197 1 3 1227 486 0 0 0 chr3 84163001 84163055 -75436728 + (GA)n Simple_repeat Simple_repeat 1 54 0 3 1227 2256 87 60 17 chr3 84163083 84163435 -75436348 - IAPLTR1_Mm LTR ERVK 0 367 1 3 1227 39515 21 4 3 chr3 84163437 84169886 -75429897 - IAPEz-int LTR ERVK -2 6479 8 3 1227 2232 87 60 17 chr3 84169886 84170238 -75429545 - IAPLTR1_Mm LTR ERVK 0 367 1 3 1227 259 259 82 47 chr3 84170337 84170348 -75429435 + B1_Mur2 SINE Alu 11 21 -128 3 1227 297 0 0 0 chr3 84170348 84170381 -75429402 + (CA)n Simple_repeat Simple_repeat 1 33 0 3 1227 323 244 65 65 chr3 84170381 84170462 -75429321 + PB1D9 SINE Alu 24 106 -14 3 1227 207 0 0 0 chr3 84170462 84170485 -75429298 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 3 1227 453 181 0 0 chr3 84170503 84170597 -75429186 + GA-rich Low_complexity Low_complexity 3 96 0 3 1227 346 319 123 24 chr3 84170924 84171136 -75428647 + L1MEg LINE L1 383 615 -5627 3 1227 1010 210 144 11 chr3 84171160 84171430 -75428353 - ORR1E LTR MaLR -53 306 1 3 1227 1611 146 28 0 chr3 84171511 84171765 -75428018 + MT2A LTR ERVL 1 261 -272 3 1227 756 203 99 19 chr3 84171829 84171990 -75427793 + B3 SINE B2 3 176 -40 3 1227 443 173 0 13 chr3 84171997 84172073 -75427710 + MTC LTR MaLR 1 75 -346 3 1227 1663 107 4 0 chr3 84172137 84172379 -75427404 + MTC LTR MaLR 104 346 -75 3 1227 27 0 0 0 chr3 84172534 84172561 -75427222 + AT_rich Low_complexity Low_complexity 1 27 0 3 1227 305 305 142 57 chr3 84172648 84172938 -75426845 + L1MEg LINE L1 3584 3890 -2256 3 1227 1391 71 28 0 chr3 84172938 84173120 -75426663 - B2_Mm2 SINE B2 -7 188 2 3 1227 305 305 142 57 chr3 84173120 84173215 -75426568 + L1MEg LINE L1 3891 4002 -2144 3 1227 197 33 33 0 chr3 84173222 84173252 -75426531 + (CAAAA)n Simple_repeat Simple_repeat 3 33 0 3 1227 523 241 0 9 chr3 84173897 84174010 -75425773 + PB1 SINE Alu 12 123 -4 3 1227 608 235 15 0 chr3 84174046 84174178 -75425605 + RSINE1 SINE B4 3 136 -29 3 1227 3129 52 0 13 chr3 84174256 84174649 -75425134 - L1Md_F2 LINE L1 0 6582 6195 3 1227 226 324 0 0 chr3 84174908 84174982 -75424801 + L1MEg LINE L1 5363 5436 -804 3 1227 236 191 79 0 chr3 84175060 84175123 -75424660 + L1MEg LINE L1 5595 5662 -511 3 1227 468 187 204 56 chr3 84175148 84175290 -75424493 + RSINE1 SINE B4 3 165 0 3 1227 928 280 40 18 chr3 84175310 84175637 -75424146 + L1MB2 LINE L1 5780 6113 -58 3 1227 204 40 0 0 chr3 84175725 84175750 -75424033 + (TAAAAA)n Simple_repeat Simple_repeat 2 26 0 3 1227 252 243 75 75 chr3 84175948 84176028 -75423755 + L1M5 LINE L1 5458 5537 -587 3 1227 301 262 73 18 chr3 84176167 84176276 -75423507 + ORR1E LTR MaLR 1 115 -244 3 1227 981 69 0 0 chr3 84176576 84176706 -75423077 + (TAGA)n Simple_repeat Simple_repeat 2 131 0 3 1227 549 0 0 0 chr3 84176767 84176828 -75422955 + (TAGA)n Simple_repeat Simple_repeat 2 62 0 3 1227 279 0 0 0 chr3 84176966 84176997 -75422786 + (T)n Simple_repeat Simple_repeat 1 31 0 3 1227 297 95 0 0 chr3 84177017 84177059 -75422724 - ID_B1 SINE B4 0 224 183 3 1227 534 285 95 22 chr3 84177128 84177389 -75422394 + MLT1B LTR MaLR 3 279 -95 3 1227 1490 142 5 0 chr3 84178064 84178283 -75421500 + URR1A DNA MER1_type 7 226 0 3 1227 288 0 0 0 chr3 84178592 84178624 -75421159 + (TG)n Simple_repeat Simple_repeat 2 33 0 3 1227 383 223 7 177 chr3 84178758 84178905 -75420878 + RMER15 LTR ERVL 1 122 -453 3 1227 892 252 112 8 chr3 84178954 84179194 -75420589 + RMER15 LTR ERVL 310 574 -1 3 1227 571 245 181 0 chr3 84179200 84179404 -75420379 - MLT2C2 LTR ERVL -223 241 1 3 1227 462 18 0 0 chr3 84180790 84180845 -75418938 + (CA)n Simple_repeat Simple_repeat 2 56 0 3 1227 415 302 121 26 chr3 84180983 84181153 -75418630 - Tigger7 DNA MER2_type 0 2491 2305 3 1227 1235 224 50 112 chr3 84181153 84181555 -75418228 + MTE2a LTR MaLR 1 377 -2 3 1227 415 302 121 26 chr3 84181555 84181615 -75418168 - Tigger7 DNA MER2_type -187 2304 2241 3 1227 548 337 102 18 chr3 84181673 84181957 -75417826 - Tigger7 DNA MER2_type -2054 437 130 3 1227 402 148 9 36 chr3 84182549 84182661 -75417122 + (TCTCTG)n Simple_repeat Simple_repeat 6 114 0 3 1227 654 158 302 45 chr3 84182957 84183136 -75416647 - URR1B DNA MER1_type 0 225 1 3 1227 550 262 32 0 chr3 84183380 84183506 -75416277 + B1_Mur1 SINE Alu 3 132 -17 3 1227 190 262 34 56 chr3 84183731 84183820 -75415963 + MIR3 SINE MIR 11 97 -111 3 1227 225 351 56 78 chr3 84184042 84184221 -75415562 - ORR1E LTR MaLR -165 194 20 3 1227 653 211 30 182 chr3 84184253 84184456 -75415327 - MLT1C LTR MaLR -24 443 196 3 1227 536 229 0 0 chr3 84184942 84185038 -75414745 + PB1D7 SINE Alu 5 100 -20 3 1227 1080 111 0 4 chr3 84185078 84185348 -75414435 + (GGA)n Simple_repeat Simple_repeat 1 269 0 3 1227 663 229 34 113 chr3 84186575 84186617 -75413166 - RSINE1 SINE B4 0 165 141 3 1227 417 39 0 0 chr3 84186617 84186668 -75413115 + (TG)n Simple_repeat Simple_repeat 2 52 0 3 1227 663 229 34 113 chr3 84186668 84186802 -75412981 - RSINE1 SINE B4 -25 140 3 3 1227 316 261 37 44 chr3 84186823 84186861 -75412922 + MER53 DNA hAT 55 87 -106 3 1227 3348 38 5 2 chr3 84186861 84187256 -75412527 - MTA_Mm LTR MaLR 0 396 1 3 1227 316 261 37 44 chr3 84187256 84187353 -75412430 + MER53 DNA hAT 88 188 -5 3 1227 183 129 0 0 chr3 84187636 84187667 -75412116 + (CCTAG)n Simple_repeat Simple_repeat 1 31 0 3 1227 921 203 52 74 chr3 84187953 84188182 -75411601 - URR1A DNA MER1_type -1 225 2 3 1227 1452 240 67 32 chr3 84188256 84188661 -75411122 - MTD LTR MaLR 0 419 1 3 1227 1026 215 15 24 chr3 84189256 84189461 -75410322 - B3 SINE B2 -5 211 9 3 1227 1045 236 205 15 chr3 84190460 84190792 -75408991 - MTD LTR MaLR -4 415 21 3 1227 234 235 204 93 chr3 84190696 84190804 -75408979 - MT2A LTR ERVL -413 120 1 3 1227 504 0 0 0 chr3 84190810 84190866 -75408917 + (TC)n Simple_repeat Simple_repeat 2 57 0 3 1227 651 78 0 0 chr3 84190886 84190976 -75408807 + (TAGA)n Simple_repeat Simple_repeat 3 92 0 3 1227 243 61 0 0 chr3 84191551 84191584 -75408199 + (CA)n Simple_repeat Simple_repeat 1 33 0 3 1227 272 164 18 18 chr3 84191944 84192000 -75407783 + tRNA-Ala-GCY_ tRNA tRNA 3 58 -17 3 1227 249 268 37 0 chr3 84192000 84192020 -75407763 + BC1_Mm scRNA scRNA 17 85 -67 3 1227 1113 316 71 54 chr3 84192397 84193139 -75406644 + L1ME3 LINE L1 5323 6077 -85 3 1227 205 259 0 18 chr3 84193143 84193198 -75406585 + (TG)n Simple_repeat Simple_repeat 1 54 0 3 1227 1387 214 100 31 chr3 84193344 84193366 -75406417 + MTD LTR MaLR 1 20 -399 3 1227 180 0 0 0 chr3 84193366 84193386 -75406397 + (TTTTG)n Simple_repeat Simple_repeat 5 24 0 3 1227 1387 214 100 31 chr3 84193386 84193754 -75406029 + MTD LTR MaLR 21 418 -1 3 1227 741 191 35 0 chr3 84193756 84193897 -75405886 - B1_Mur1 SINE Alu -1 148 3 3 1227 399 37 35 35 chr3 84193900 84193985 -75405798 + (CAAAA)n Simple_repeat Simple_repeat 2 86 0 3 1227 414 0 0 0 chr3 84194205 84194251 -75405532 + (TG)n Simple_repeat Simple_repeat 2 47 0 4 1227 359 292 23 31 chr3 84194840 84195046 -75404737 - MIR SINE MIR -35 233 28 4 1227 364 262 73 84 chr3 84195157 84195336 -75404447 - MTEb LTR MaLR 0 379 203 4 1227 1569 285 100 50 chr3 84195448 84196201 -75403582 - L1MC1 LINE L1 0 6333 5544 4 1227 630 160 23 78 chr3 84196269 84196398 -75403385 + ID_B1 SINE B4 82 203 -21 4 1227 870 253 102 9 chr3 84196421 84196758 -75403025 - L1MC1 LINE L1 -779 5554 5188 4 1227 289 250 14 14 chr3 84197374 84197443 -75402340 + MER5B DNA MER1_type 7 75 -103 4 1227 297 75 0 0 chr3 84198430 84198470 -75401313 + (TTTA)n Simple_repeat Simple_repeat 2 41 0 4 1227 264 282 92 53 chr3 84198493 84198624 -75401159 - RSINE1 SINE B4 -22 143 8 4 1227 684 152 0 0 chr3 84199607 84199725 -75400058 + (TA)n Simple_repeat Simple_repeat 2 119 0 4 1227 284 259 7 0 chr3 84199729 84199864 -75399919 + (CA)n Simple_repeat Simple_repeat 1 136 0 4 1227 643 207 89 0 chr3 84200095 84200230 -75399553 - B1_Mur1 SINE Alu 0 149 3 4 1227 4552 67 10 5 chr3 84200459 84201045 -75398738 - L1Md_F2 LINE L1 -12 6570 5982 4 1227 351 0 0 0 chr3 84201388 84201427 -75398356 + (TG)n Simple_repeat Simple_repeat 2 40 0 4 1227 246 282 42 0 chr3 84201434 84201505 -75398278 - RSINE1 SINE B4 -48 117 44 4 1227 329 337 0 39 chr3 84201559 84201661 -75398122 - PB1D10 SINE Alu -19 98 1 4 1227 1272 258 60 35 chr3 84202442 84202812 -75396971 + MTEa LTR MaLR 1 379 0 4 1227 450 0 0 0 chr3 84203329 84203379 -75396404 + (TG)n Simple_repeat Simple_repeat 1 50 0 4 1227 259 326 11 0 chr3 84203379 84203468 -75396315 + PB1D10 SINE Alu 28 117 0 4 1227 520 289 137 39 chr3 84204385 84204742 -75395041 + Charlie1a DNA MER1_type 1014 1405 -50 4 1227 678 301 87 33 chr3 84204864 84205232 -75394551 - L1MD1 LINE L1 -160 6473 6086 4 1227 975 18 0 0 chr3 84205232 84205345 -75394438 + (TTCC)n Simple_repeat Simple_repeat 4 116 0 4 1227 359 351 76 12 chr3 84205346 84205572 -75394211 - MLT1A LTR MaLR -54 320 74 4 1227 920 280 182 31 chr3 84205621 84205945 -75393838 - MLT1A-int LTR MaLR -8 1727 1408 4 1227 189 0 0 0 chr3 84205948 84205969 -75393814 + (A)n Simple_repeat Simple_repeat 1 21 0 4 1227 306 293 192 7 chr3 84206255 84206406 -75393377 - MLT1A-int LTR MaLR -1183 552 374 4 1227 388 331 43 10 chr3 84206635 84206834 -75392949 - L1MD1 LINE L1 -1841 4696 4484 4 1227 218 373 8 16 chr3 84206888 84206950 -75392833 + polypyrimidine Low_complexity Low_complexity 70 130 0 4 1227 510 46 0 0 chr3 84206950 84207015 -75392768 + (TCCCC)n Simple_repeat Simple_repeat 3 67 0 4 1227 218 373 8 16 chr3 84207015 84207080 -75392703 + polypyrimidine Low_complexity Low_complexity 4 69 0 4 1227 303 277 154 117 chr3 84207111 84207864 -75391919 - L1MD1 LINE L1 -2819 3718 2938 4 1227 479 226 21 50 chr3 84207992 84208132 -75391651 + MTEa LTR MaLR 240 375 -4 4 1227 239 311 203 8 chr3 84208522 84208645 -75391138 - L1MD1 LINE L1 -5556 1077 931 4 1227 702 258 78 68 chr3 84208791 84209133 -75390650 - L1MD1 LINE L1 -6141 492 237 4 1227 21 0 0 0 chr3 84209515 84209536 -75390247 + AT_rich Low_complexity Low_complexity 1 21 0 4 1227 1429 176 76 110 chr3 84210110 84210315 -75389468 - RMER10B LTR ERVL -3 395 197 4 1227 468 0 0 0 chr3 84210315 84210367 -75389416 + (GA)n Simple_repeat Simple_repeat 1 52 0 4 1227 1429 176 76 110 chr3 84210367 84210570 -75389213 - RMER10B LTR ERVL -202 196 1 4 1227 701 140 92 35 chr3 84210848 84210862 -75388921 - B1_Mur4 SINE Alu 0 150 138 4 1227 207 0 0 0 chr3 84210862 84210885 -75388898 + (TTTG)n Simple_repeat Simple_repeat 1 23 0 4 1227 701 140 92 35 chr3 84210885 84211011 -75388772 - B1_Mur4 SINE Alu -13 137 2 4 1227 363 220 0 0 chr3 84212565 84212656 -75387127 + (CA)n Simple_repeat Simple_repeat 1 91 0 4 1227 249 33 0 0 chr3 84212659 84212689 -75387094 + (TC)n Simple_repeat Simple_repeat 2 31 0 4 1227 795 202 0 5 chr3 84214812 84215263 -75384520 + (CA)n Simple_repeat Simple_repeat 1 448 0 4 1227 986 238 124 26 chr3 84215305 84215360 -75384423 - MTE2b LTR MaLR -41 338 283 4 1227 1926 120 128 6 chr3 84215360 84215687 -75384096 - ORR1B2 LTR MaLR 0 367 1 4 1227 986 238 124 26 chr3 84215687 84215937 -75383846 - MTE2b LTR MaLR -97 282 3 4 1227 436 284 205 59 chr3 84218474 84218747 -75381036 + MLT1D LTR MaLR 17 329 -176 4 1227 302 263 0 13 chr3 84218941 84219018 -75380765 - ID4 SINE ID -6 77 2 4 1227 278 165 38 12 chr3 84219150 84219230 -75380553 + (TA)n Simple_repeat Simple_repeat 2 83 0 4 1227 663 209 172 0 chr3 84219355 84219518 -75380265 + B3 SINE B2 15 205 -11 4 1227 216 309 0 42 chr3 84219756 84219827 -75379956 - MIRb SINE MIR -77 191 124 4 1227 260 288 0 29 chr3 84220350 84220418 -75379365 - tRNA-Ala-GCA tRNA tRNA -9 66 1 4 1227 414 221 62 10 chr3 84220444 84220540 -75379243 + B1F1 SINE Alu 15 115 -34 4 1227 351 305 76 8 chr3 84220540 84220563 -75379220 + ID_B1 SINE B4 96 222 -2 4 1227 302 324 0 0 chr3 84220589 84220660 -75379123 + ID4_ SINE ID 12 82 -1 4 1227 246 128 0 0 chr3 84220673 84220712 -75379071 + (TAAA)n Simple_repeat Simple_repeat 4 42 0 4 1227 1073 187 28 214 chr3 84221587 84221798 -75377985 - RMER17C LTR ERVK 0 410 237 4 1227 381 43 0 0 chr3 84221798 84221845 -75377938 + (CA)n Simple_repeat Simple_repeat 1 47 0 4 1227 1073 187 28 214 chr3 84221845 84222137 -75377646 - RMER17C LTR ERVK -174 236 1 4 1227 622 271 63 57 chr3 84222632 84222900 -75376883 + MLT1G1 LTR MaLR 257 579 0 4 1227 349 280 45 35 chr3 84223547 84223669 -75376114 + MER58B DNA MER1_type 1 130 -85 4 1227 924 206 200 29 chr3 84223669 84223742 -75376041 + B4A SINE B4 4 82 -210 4 1227 396 0 0 0 chr3 84223742 84223786 -75375997 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 4 1227 924 206 200 29 chr3 84223786 84223885 -75375898 + B4A SINE B4 83 216 -76 4 1227 396 59 0 0 chr3 84223885 84223936 -75375847 + (TAGA)n Simple_repeat Simple_repeat 2 52 0 4 1227 924 206 200 29 chr3 84223936 84224007 -75375776 + B4A SINE B4 217 290 -2 4 1227 257 338 71 35 chr3 84224007 84224025 -75375758 + MER58C DNA MER1_type 131 146 -69 4 1227 1104 102 0 0 chr3 84224068 84224215 -75375568 + B1_Mus1 SINE Alu 2 148 0 4 1227 229 277 0 0 chr3 84224240 84224287 -75375496 + MER58B DNA MER1_type 153 199 -142 4 1227 189 0 0 0 chr3 84224632 84224653 -75375130 + (GTTTG)n Simple_repeat Simple_repeat 2 22 0 4 1227 398 171 40 0 chr3 84224653 84224729 -75375054 - ID4 SINE ID -3 80 2 4 1227 470 260 0 0 chr3 84225454 84225550 -75374233 - MTD LTR MaLR -229 190 95 4 1227 1010 104 42 0 chr3 84225801 84225945 -75373838 + B1_Mur4 SINE Alu 1 150 0 4 1227 733 129 7 88 chr3 84225951 84226087 -75373696 + URR1B DNA MER1_type 101 225 0 4 1227 316 278 0 0 chr3 84227451 84227523 -75372260 + ID4 SINE ID 2 73 -10 4 1227 424 265 49 49 chr3 84227545 84227668 -75372115 + PB1 SINE Alu 3 125 -2 4 1227 862 240 133 4 chr3 84227703 84227966 -75371817 - MLT1C LTR MaLR -105 362 66 4 1227 183 80 0 0 chr3 84228025 84228050 -75371733 + (TTTG)n Simple_repeat Simple_repeat 4 28 0 4 1227 920 271 87 8 chr3 84228113 84228192 -75371591 + B4A SINE B4 2 81 -211 4 1227 276 30 0 0 chr3 84228192 84228225 -75371558 + (CAGA)n Simple_repeat Simple_repeat 4 36 0 4 1227 920 271 87 8 chr3 84228225 84228398 -75371385 + B4A SINE B4 82 273 -19 4 1227 369 0 0 0 chr3 84228413 84228454 -75371329 + (CA)n Simple_repeat Simple_repeat 2 42 0 4 1227 443 306 107 4 chr3 84229460 84229713 -75370070 + L1MA5 LINE L1 5741 6019 -281 4 1227 300 309 165 62 chr3 84229732 84229956 -75369827 - HAL1-3A_ME LINE L1 -648 2210 1964 4 1227 294 266 73 37 chr3 84229957 84229970 -75369813 - ID_B1 SINE B4 -132 92 8 4 1227 354 246 29 0 chr3 84229970 84230039 -75369744 - ID4_ SINE ID -5 78 8 4 1227 216 295 0 0 chr3 84230047 84230108 -75369675 + (TA)n Simple_repeat Simple_repeat 1 61 0 4 1227 815 232 85 0 chr3 84230113 84230290 -75369493 - ID_B1 SINE B4 0 224 33 4 1227 343 276 39 77 chr3 84230390 84230548 -75369235 - MLT1C LTR MaLR -7 460 216 4 1227 490 268 18 0 chr3 84231042 84231154 -75368629 + PB1D10 SINE Alu 3 116 -1 4 1227 215 237 51 38 chr3 84233957 84234036 -75365747 + MamSINE1 SINE tRNA 51 130 -160 4 1227 201 133 0 0 chr3 84234241 84234271 -75365512 + (TCCC)n Simple_repeat Simple_repeat 1 30 0 4 1227 206 283 0 0 chr3 84234273 84234319 -75365464 + GA-rich Low_complexity Low_complexity 1 46 0 4 1227 299 258 0 15 chr3 84234597 84234664 -75365119 + CT-rich Low_complexity Low_complexity 2 67 0 4 1227 687 294 89 10 chr3 84234666 84234887 -75364896 - ID_B1 SINE B4 -46 246 2 4 1227 270 138 0 0 chr3 84236265 84236323 -75363460 + (TC)n Simple_repeat Simple_repeat 1 58 0 4 1227 872 149 21 0 chr3 84236324 84236465 -75363318 - B1_Mur3 SINE Alu -5 144 1 4 1227 298 263 13 0 chr3 84237495 84237571 -75362212 - PB1D10 SINE Alu -8 109 33 4 1227 393 256 209 33 chr3 84238738 84238920 -75360863 - L1ME3A LINE L1 -12 6161 5948 4 1227 1040 256 80 0 chr3 84238958 84239220 -75360563 - B4A SINE B4 -6 286 4 4 1227 213 290 15 61 chr3 84240393 84240459 -75359324 - MIR SINE MIR -172 90 28 4 1227 212 329 68 43 chr3 84241788 84241950 -75357833 - L3 LINE CR1 -363 4126 3961 4 1227 189 0 0 0 chr3 84242559 84242580 -75357203 + (CGGT)n Simple_repeat Simple_repeat 1 21 0 4 1227 188 103 0 0 chr3 84243370 84243399 -75356384 - MER5A DNA MER1_type -80 109 81 4 1227 850 260 141 57 chr3 84244018 84244352 -75355431 - MLT1A0 LTR MaLR 0 365 4 4 1227 285 38 0 86 chr3 84245057 84245067 -75354716 + (AGGGGG)n Simple_repeat Simple_repeat 5 14 0 4 1227 1054 123 6 11 chr3 84245067 84245248 -75354535 + (GAA)n Simple_repeat Simple_repeat 1 180 0 4 1227 285 38 0 86 chr3 84245248 84245295 -75354488 + (AGGGGG)n Simple_repeat Simple_repeat 3 45 0 4 1227 420 199 59 0 chr3 84247267 84247377 -75352406 + B1F SINE Alu 2 117 0 4 1227 29 0 0 0 chr3 84247972 84248001 -75351782 + AT_rich Low_complexity Low_complexity 1 29 0 4 1227 363 44 0 0 chr3 84250588 84250633 -75349150 + (TG)n Simple_repeat Simple_repeat 2 46 0 4 1227 542 316 29 0 chr3 84251251 84251425 -75348358 - MER2 DNA MER2_type -17 328 150 4 1227 267 243 154 77 chr3 84253009 84253041 -75346742 + B4 SINE B4 62 195 -97 4 1227 485 227 11 25 chr3 84253041 84253159 -75346624 + PB1D10 SINE Alu 1 115 -2 4 1227 333 0 0 0 chr3 84254065 84254102 -75345681 + (GA)n Simple_repeat Simple_repeat 2 38 0 5 1227 243 0 0 0 chr3 84254694 84254721 -75345062 + (A)n Simple_repeat Simple_repeat 1 27 0 5 1227 551 262 8 0 chr3 84256447 84256573 -75343210 + PB1 SINE Alu 1 127 0 5 1227 452 286 82 22 chr3 84256604 84256779 -75343004 + MER63A DNA AcHobo 1 167 -43 5 1227 450 0 0 0 chr3 84257246 84257296 -75342487 + (CA)n Simple_repeat Simple_repeat 2 51 0 5 1227 252 254 60 0 chr3 84258182 84258249 -75341534 + ID SINE ID 1 71 -153 5 1227 250 269 63 13 chr3 84258249 84258261 -75341522 + ID4_ SINE ID 1 83 0 5 1227 443 108 21 21 chr3 84260547 84260642 -75339141 + (CA)n Simple_repeat Simple_repeat 1 95 0 5 1227 24 0 0 0 chr3 84260831 84260855 -75338928 + AT_rich Low_complexity Low_complexity 1 24 0 5 1227 365 333 0 0 chr3 84262099 84262216 -75337567 - PB1D10 SINE Alu 0 117 1 5 1227 218 262 16 16 chr3 84262241 84262303 -75337480 - ID4 SINE ID -8 75 14 5 1227 1164 61 0 20 chr3 84262369 84262519 -75337264 + B1_Mus1 SINE Alu 2 148 0 5 1227 259 330 89 37 chr3 84262570 84262784 -75336999 + L1MA5A LINE L1 5720 5944 -353 5 1227 429 20 0 0 chr3 84262943 84262993 -75336790 + (TC)n Simple_repeat Simple_repeat 1 50 0 5 1227 333 0 0 0 chr3 84262993 84263029 -75336754 + (CA)n Simple_repeat Simple_repeat 1 37 0 5 1227 290 219 30 30 chr3 84263673 84263739 -75336044 - ID2 SINE ID -3 80 15 5 1227 698 23 11 0 chr3 84265932 84266020 -75333763 + (TG)n Simple_repeat Simple_repeat 1 89 0 5 1227 375 322 105 9 chr3 84267833 84268062 -75331721 - MIRb SINE MIR -16 252 2 5 1227 234 346 58 29 chr3 84268627 84268731 -75331052 + RMER15 LTR ERVL 360 466 -109 5 1227 357 294 77 93 chr3 84268786 84269045 -75330738 - RLTR21 LTR ERVK -228 1344 1090 5 1227 369 167 0 0 chr3 84269045 84269123 -75330660 + (CA)n Simple_repeat Simple_repeat 1 78 0 5 1227 714 223 0 45 chr3 84269459 84269614 -75330169 + B1_Mur4 SINE Alu 3 150 0 5 1227 213 302 0 19 chr3 84269795 84269849 -75329934 + B4A SINE B4 88 140 -152 5 1227 213 272 185 0 chr3 84269849 84269876 -75329907 + PB1D7 SINE Alu 3 98 -22 5 1227 283 232 0 0 chr3 84269945 84270001 -75329782 + ID4 SINE ID 14 69 -14 5 1227 304 259 165 0 chr3 84270221 84270306 -75329477 + PB1D7 SINE Alu 12 110 -10 5 1227 309 51 0 0 chr3 84270306 84270345 -75329438 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 5 1227 289 233 19 50 chr3 84271493 84271657 -75328126 - MIRb SINE MIR -26 182 26 5 1227 313 310 90 0 chr3 84272599 84272754 -75327029 - L1MB3 LINE L1 0 6183 6015 5 1227 189 0 0 0 chr3 84272843 84272864 -75326919 + (TG)n Simple_repeat Simple_repeat 2 22 0 5 1227 1118 256 60 8 chr3 84272878 84273146 -75326637 - B4 SINE B4 -9 283 2 5 1227 198 86 28 28 chr3 84274023 84274059 -75325724 + L3 LINE CR1 1148 1183 -3306 5 1227 773 200 168 0 chr3 84274088 84274273 -75325510 + B3 SINE B2 1 216 0 5 1227 957 258 137 5 chr3 84275320 84275716 -75324067 + L1MB2 LINE L1 5682 6127 -57 5 1227 225 0 0 0 chr3 84275752 84275777 -75324006 + (TGG)n Simple_repeat Simple_repeat 2 26 0 5 1227 267 284 15 0 chr3 84275778 84275845 -75323938 + ID2 SINE ID 15 82 -1 5 1227 930 191 90 5 chr3 84275854 84276043 -75323740 + B3 SINE B2 2 206 -10 5 1227 579 260 50 108 chr3 84276086 84276383 -75323400 + B4 SINE B4 2 281 -11 5 1227 344 208 8 98 chr3 84278329 84278462 -75321321 + GA-rich Low_complexity Low_complexity 1 121 0 5 1228 442 293 134 0 chr3 84280125 84280282 -75319501 + B3A SINE B2 5 182 -16 5 1228 243 171 11 126 chr3 84280481 84280568 -75319215 + MT2B LTR ERVL 164 240 -361 5 1228 713 139 7 42 chr3 84280493 84280636 -75319147 + B1_Mur4 SINE Alu 12 149 -1 5 1228 257 240 0 0 chr3 84280730 84280780 -75319003 - ID4_ SINE ID -4 79 30 5 1228 21 89 0 0 chr3 84284288 84284344 -75315439 + GC_rich Low_complexity Low_complexity 1 56 0 5 1228 288 297 0 0 chr3 84284939 84285013 -75314770 + CT-rich Low_complexity Low_complexity 3 76 0 5 1228 368 196 10 58 chr3 84285692 84285795 -75313988 - B1_Mur4 SINE Alu 0 150 53 5 1228 446 0 19 0 chr3 84287999 84288053 -75311730 + (TG)n Simple_repeat Simple_repeat 1 55 0 5 1228 449 274 26 0 chr3 84288055 84288168 -75311615 - RSINE1 SINE B4 -36 129 14 5 1228 216 0 0 0 chr3 84288409 84288433 -75311350 + (T)n Simple_repeat Simple_repeat 1 24 0 5 1228 351 0 0 0 chr3 84288553 84288592 -75311191 + (TG)n Simple_repeat Simple_repeat 1 39 0 5 1228 891 36 0 0 chr3 84288592 84288702 -75311081 + (GA)n Simple_repeat Simple_repeat 1 111 0 5 1228 207 0 0 0 chr3 84289096 84289119 -75310664 + (TG)n Simple_repeat Simple_repeat 2 24 0 5 1228 450 0 0 0 chr3 84291809 84291859 -75307924 + (CCA)n Simple_repeat Simple_repeat 1 50 0 5 1228 357 252 28 0 chr3 84294293 84294400 -75305383 + PB1D9 SINE Alu 2 111 -9 5 1228 266 239 104 0 chr3 84294850 84294917 -75304866 + RSINE1 SINE B4 71 144 -21 5 1228 1294 92 32 11 chr3 84295042 84295229 -75304554 - B2_Mm1t SINE B2 -2 191 1 5 1228 375 242 218 66 chr3 84295553 84295796 -75303987 - B4A SINE B4 -12 280 1 5 1228 806 136 57 0 chr3 84295840 84295980 -75303803 - B1_Mus1 SINE Alu 0 148 1 5 1228 22 0 0 0 chr3 84296566 84296588 -75303195 + AT_rich Low_complexity Low_complexity 1 22 0 5 1228 1275 188 157 9 chr3 84296601 84296944 -75302839 + MTC LTR MaLR 1 394 -27 5 1228 516 239 84 62 chr3 84296960 84297138 -75302645 - B3A SINE B2 -34 182 1 5 1228 2092 114 67 3 chr3 84297179 84297539 -75302244 + ORR1B1 LTR MaLR 1 383 -11 5 1228 257 250 0 0 chr3 84297546 84297602 -75302181 - RSINE1 SINE B4 -102 63 8 5 1228 229 214 107 0 chr3 84297605 84297654 -75302129 + RCHARR1 DNA MER1_type 448 496 -478 5 1228 797 230 66 0 chr3 84297654 84297850 -75301933 + B3 SINE B2 1 209 -7 5 1228 229 214 107 0 chr3 84297850 84297884 -75301899 + RCHARR1 DNA MER1_type 497 539 -435 5 1228 302 303 92 0 chr3 84297903 84298012 -75301771 + ID_B1 SINE B4 98 216 -8 5 1228 858 270 120 11 chr3 84298086 84298435 -75301348 + RCHARR1 DNA MER1_type 553 939 -35 5 1228 2909 69 0 0 chr3 84298996 84299360 -75300423 + L1_Mus1 LINE L1 6204 6567 0 5 1228 364 261 35 0 chr3 84302532 84302647 -75297136 + L1M5 LINE L1 5321 5439 -740 5 1228 417 310 69 103 chr3 84303398 84303689 -75296094 + B4A SINE B4 2 282 -10 5 1228 268 265 29 14 chr3 84304260 84304329 -75295454 - BC1_Mm scRNA scRNA -82 70 1 5 1228 333 118 0 0 chr3 84304658 84304709 -75295074 + (TG)n Simple_repeat Simple_repeat 2 52 0 5 1228 329 254 14 0 chr3 84304723 84304794 -75294989 - ID4_ SINE ID -11 72 1 5 1228 330 154 0 0 chr3 84305855 84305933 -75293850 + G-rich Low_complexity Low_complexity 5 82 0 5 1228 237 362 16 63 chr3 84306018 84306207 -75293576 + RMER4B LTR ERVK 7 186 -399 5 1228 513 244 0 70 chr3 84307964 84308092 -75291691 + ID_B1 SINE B4 99 217 -7 5 1228 247 148 52 69 chr3 84308040 84308098 -75291685 + PB1D7 SINE Alu 63 119 -1 5 1228 407 176 0 13 chr3 84308937 84309012 -75290771 - PB1D10 SINE Alu -21 96 23 5 1228 791 143 16 0 chr3 84309062 84309188 -75290595 + B1_Mus2 SINE Alu 2 129 -18 5 1228 519 285 70 35 chr3 84309252 84309581 -75290202 + L1MA4 LINE L1 5623 6009 -282 5 1228 960 178 68 9 chr3 84309583 84309804 -75289979 - RMER10A LTR ERVL -13 429 196 5 1228 228 288 25 12 chr3 84310279 84310360 -75289423 - ID4 SINE ID -1 82 1 5 1228 842 48 0 0 chr3 84311013 84311116 -75288667 - Lx3C LINE L1 -579 6397 6295 5 1228 426 239 165 87 chr3 84311117 84311323 -75288460 - B4A SINE B4 -26 266 45 5 1228 2263 113 104 11 chr3 84311323 84311697 -75288086 + Lx3B LINE L1 6563 6971 -2 5 1228 591 148 20 0 chr3 84312441 84312542 -75287241 + B1_Mur2 SINE Alu 46 148 -1 5 1228 1769 78 8 0 chr3 84312546 84312788 -75286995 + L1_Mus2 LINE L1 6323 6566 0 5 1228 234 264 13 53 chr3 84313267 84313343 -75286440 + ID4 SINE ID 2 74 -9 5 1228 259 176 20 0 chr3 84313393 84313444 -75286339 + MurSatRep1 Unknown Unknown 228 279 -1858 5 1228 327 296 36 30 chr3 84314452 84314619 -75285164 - MER33 DNA MER1_type -133 191 24 5 1228 543 176 39 0 chr3 84315071 84315173 -75284610 - B1_Mur4 SINE Alu -7 143 38 5 1228 630 232 28 7 chr3 84315191 84315334 -75284449 - B1_Mus2 SINE Alu 0 147 2 5 1228 2150 194 37 51 chr3 84315768 84316334 -75283449 + RLTR31_Mm LTR ERVK 4 561 0 5 1228 403 220 29 48 chr3 84320692 84320797 -75278986 + PB1D10 SINE Alu 13 115 -2 5 1228 22 0 0 0 chr3 84320966 84320988 -75278795 + AT_rich Low_complexity Low_complexity 1 22 0 5 1228 860 193 0 0 chr3 84321086 84321221 -75278562 + B1_Mur3 SINE Alu 1 135 -14 5 1228 904 229 176 3 chr3 84321451 84321758 -75278025 + Lx9 LINE L1 7284 7643 -1 5 1228 591 296 36 45 chr3 84322089 84322312 -75277471 + ID_B1 SINE B4 2 222 -2 5 1228 336 24 0 0 chr3 84322323 84322364 -75277419 + (TAAA)n Simple_repeat Simple_repeat 4 44 0 5 1228 781 129 6 114 chr3 84322741 84322907 -75276876 + B1_Mur4 SINE Alu 1 148 -2 5 1228 1325 82 71 6 chr3 84322979 84323162 -75276621 + B2_Mm2 SINE B2 1 195 0 5 1228 31 26 0 0 chr3 84324220 84324258 -75275525 + AT_rich Low_complexity Low_complexity 1 38 0 6 1228 245 234 47 0 chr3 84324355 84324419 -75275364 + PB1D10 SINE Alu 49 115 -2 6 1228 205 161 0 0 chr3 84324447 84324478 -75275305 + (CAA)n Simple_repeat Simple_repeat 3 33 0 6 1228 476 229 0 28 chr3 84325178 84325286 -75274497 + RSINE1 SINE B4 41 145 -20 6 1228 381 43 0 0 chr3 84325291 84325338 -75274445 + (CA)n Simple_repeat Simple_repeat 2 48 0 6 1228 405 0 0 0 chr3 84325346 84325391 -75274392 + (TAAA)n Simple_repeat Simple_repeat 4 48 0 6 1228 5114 45 9 0 chr3 84325927 84326572 -75273211 - L1_Mm LINE L1 -3552 2331 1681 6 1228 5000 63 16 0 chr3 84326565 84327198 -75272585 + L1Md_F3 LINE L1 4944 5586 -297 6 1228 8506 31 6 1 chr3 84327198 84328191 -75271592 + L1Md_F3 LINE L1 5587 6584 0 6 1228 384 245 59 39 chr3 84328413 84328515 -75271268 + B1_Mur1 SINE Alu 5 108 -41 6 1228 30 0 0 24 chr3 84328615 84328633 -75271150 + AT_rich Low_complexity Low_complexity 1 18 0 6 1228 1160 48 14 0 chr3 84328633 84328778 -75271005 + B1_Mm SINE Alu 1 147 0 6 1228 30 0 0 24 chr3 84328778 84328800 -75270983 + AT_rich Low_complexity Low_complexity 1 22 0 6 1228 926 235 49 0 chr3 84330232 84330436 -75269347 + B3 SINE B2 1 214 -2 6 1228 336 245 18 64 chr3 84331022 84331131 -75268652 + PB1 SINE Alu 21 124 -3 6 1228 414 0 0 0 chr3 84331198 84331244 -75268539 + (TG)n Simple_repeat Simple_repeat 2 47 0 6 1228 428 200 12 0 chr3 84331245 84331325 -75268458 - B1F1 SINE Alu -60 89 9 6 1228 375 78 0 0 chr3 84331351 84331402 -75268381 + (TATG)n Simple_repeat Simple_repeat 2 52 0 6 1228 186 43 0 0 chr3 84331402 84331425 -75268358 + (CA)n Simple_repeat Simple_repeat 2 24 0 6 1228 676 321 72 0 chr3 84332026 84332263 -75267520 + B4A SINE B4 9 262 -30 6 1228 216 0 0 0 chr3 84332394 84332418 -75267365 + (CCAA)n Simple_repeat Simple_repeat 4 27 0 6 1228 243 0 0 0 chr3 84332979 84333006 -75266777 + (CAG)n Simple_repeat Simple_repeat 2 28 0 6 1228 477 351 12 6 chr3 84334490 84334656 -75265127 - B4A SINE B4 -124 168 2 6 1228 280 259 8 121 chr3 84335588 84335720 -75264063 + PB1D10 SINE Alu 1 117 0 6 1228 384 302 0 13 chr3 84336000 84336091 -75263692 + ID4 SINE ID 5 94 -58 6 1228 317 291 35 88 chr3 84336269 84336382 -75263401 - B4 SINE B4 -18 274 168 6 1228 739 97 0 17 chr3 84336671 84336786 -75262997 + B1_Mur4 SINE Alu 38 150 0 6 1228 202 216 0 0 chr3 84337610 84337647 -75262136 + (CATATA)n Simple_repeat Simple_repeat 4 40 0 6 1228 705 301 114 29 chr3 84337659 84338001 -75261782 + MER68 LTR ERVL 1 371 -192 6 1228 185 225 55 27 chr3 84338860 84338933 -75260850 - L2 LINE L2 -2520 899 825 6 1228 1837 9 0 22 chr3 84339359 84339582 -75260201 + L1Md_T LINE L1 6365 6582 0 6 1228 390 275 110 55 chr3 84341043 84341189 -75258594 + MIRc SINE MIR 27 180 -88 6 1228 238 132 11 67 chr3 84341666 84341755 -75258028 + A-rich Low_complexity Low_complexity 2 85 0 6 1228 475 248 171 0 chr3 84342621 84342884 -75256899 + MTE2b LTR MaLR 9 366 -13 6 1228 875 52 0 9 chr3 84343824 84343929 -75255854 + B1_Mm SINE Alu 33 137 -10 6 1228 252 0 0 0 chr3 84343929 84343957 -75255826 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 6 1228 649 219 74 12 chr3 84343975 84344137 -75255646 - B3A SINE B2 -17 181 10 6 1228 339 260 78 103 chr3 84344613 84344729 -75255054 - B1_Mur2 SINE Alu -7 113 1 6 1228 189 0 0 0 chr3 84344910 84344931 -75254852 + (TTCA)n Simple_repeat Simple_repeat 1 21 0 6 1228 219 88 0 0 chr3 84344934 84344968 -75254815 + (TC)n Simple_repeat Simple_repeat 1 34 0 6 1228 183 304 91 73 chr3 84345343 84345453 -75254330 - L2a LINE L2 -6 3420 3309 6 1228 391 305 86 0 chr3 84345931 84346059 -75253724 - ID_B1 SINE B4 -4 220 82 6 1228 1099 55 0 0 chr3 84346363 84346508 -75253275 + L1_Mm LINE L1 4983 5127 -756 6 1228 2648 74 71 36 chr3 84346643 84347036 -75252747 + MTB_Mm LTR MaLR 1 407 0 6 1228 1158 50 0 0 chr3 84348084 84348224 -75251559 - B1_Mus2 SINE Alu -7 140 1 6 1228 1346 97 56 21 chr3 84348295 84348528 -75251255 - RLTR15 LTR ERVK -4 355 115 6 1228 384 255 101 10 chr3 84348926 84349025 -75250758 + PB1D10 SINE Alu 9 116 -1 6 1228 306 0 0 0 chr3 84349055 84349089 -75250694 + (CAAT)n Simple_repeat Simple_repeat 2 35 0 6 1228 524 235 17 8 chr3 84349451 84349571 -75250212 - B1F SINE Alu -1 148 28 6 1228 291 286 91 0 chr3 84349619 84349696 -75250087 + L2a LINE L2 3340 3423 -3 6 1228 314 246 0 0 chr3 84350110 84350179 -75249604 + MLT1A1 LTR MaLR 340 408 0 6 1228 333 0 0 0 chr3 84350483 84350520 -75249263 + (CA)n Simple_repeat Simple_repeat 2 38 0 6 1228 441 0 0 0 chr3 84350520 84350568 -75249215 + (GA)n Simple_repeat Simple_repeat 2 50 0 6 1228 630 189 14 4 chr3 84350568 84350703 -75249080 + PB1D9 SINE Alu 10 150 0 6 1228 205 356 56 22 chr3 84350890 84350979 -75248804 - MIRc SINE MIR -171 97 6 6 1228 295 231 15 0 chr3 84351016 84351081 -75248702 + tRNA-Ala-GCY_ tRNA tRNA 2 67 -8 6 1228 265 288 12 59 chr3 84351081 84351096 -75248687 + ID4_ SINE ID 8 83 0 6 1228 867 276 111 13 chr3 84351168 84351483 -75248300 + ORR1D2 LTR MaLR 13 358 -12 6 1228 25 0 0 0 chr3 84351578 84351603 -75248180 + AT_rich Low_complexity Low_complexity 1 25 0 6 1228 468 0 0 0 chr3 84351966 84352018 -75247765 + (TAAA)n Simple_repeat Simple_repeat 2 53 0 6 1228 212 244 0 0 chr3 84353044 84353085 -75246698 + BC1_Mm scRNA scRNA 46 86 -66 6 1228 290 184 51 112 chr3 84353151 84353167 -75246616 + MT2B LTR ERVL 155 164 -437 6 1228 371 136 92 14 chr3 84353167 84353263 -75246520 + B1_Mus1 SINE Alu 1 111 -9 6 1228 249 33 0 0 chr3 84353263 84353293 -75246490 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 6 1228 251 307 113 29 chr3 84354136 84354374 -75245409 + L1MEa LINE L1 323 580 -5490 6 1228 539 228 32 0 chr3 84354400 84354523 -75245260 - ORR1C2 LTR MaLR 0 384 258 6 1228 1846 144 44 7 chr3 84354524 84354851 -75244932 - ORR1C2 LTR MaLR -62 322 5 6 1228 402 284 242 9 chr3 84355177 84355439 -75244344 + MTEb LTR MaLR 21 349 -30 6 1228 585 280 92 77 chr3 84355401 84355673 -75244110 - MER63D DNA AcHobo -668 393 105 6 1228 767 249 25 30 chr3 84355673 84355872 -75243911 - B3A SINE B2 0 198 1 6 1228 585 280 92 77 chr3 84355872 84355924 -75243859 - MER63D DNA AcHobo -957 104 64 6 1228 315 146 0 0 chr3 84356783 84356838 -75242945 + (TCC)n Simple_repeat Simple_repeat 3 57 0 6 1228 250 199 51 14 chr3 84358373 84358454 -75241329 + L1ME3 LINE L1 5441 5521 -641 6 1228 601 284 88 8 chr3 84358575 84358861 -75240922 + L1ME3 LINE L1 5558 5866 -296 6 1228 739 259 42 5 chr3 84359027 84359217 -75240566 + B3A SINE B2 1 197 -1 6 1228 533 221 64 7 chr3 84359251 84359392 -75240391 + B1_Mur1 SINE Alu 1 149 0 6 1228 545 326 86 31 chr3 84359543 84359995 -75239788 + L1ME2 LINE L1 5658 6134 -30 6 1228 234 143 18 18 chr3 84360438 84360495 -75239288 + (TTTG)n Simple_repeat Simple_repeat 2 58 0 6 1228 301 202 231 58 chr3 84360500 84360621 -75239162 - B1_Mur4 SINE Alu -7 143 2 6 1228 758 171 57 0 chr3 84361880 84362020 -75237763 - B1_Mur3 SINE Alu -1 148 1 6 1228 332 279 90 0 chr3 84362794 84362916 -75236867 - MIR SINE MIR -26 236 104 6 1228 192 244 44 0 chr3 84363102 84363147 -75236636 - MIR SINE MIR -179 83 37 6 1228 3627 125 0 39 chr3 84363699 84364005 -75235778 + MusHAL1 LINE L1 175 466 -2888 6 1228 708 120 16 57 chr3 84364005 84364129 -75235654 - PB1D9 SINE Alu 0 120 2 6 1228 8063 75 16 13 chr3 84364129 84365543 -75234240 + MusHAL1 LINE L1 467 1881 -1472 6 1228 4023 108 35 11 chr3 84366554 84367162 -75232621 - Lx LINE L1 0 6654 6033 6 1228 226 353 129 0 chr3 84367547 84367717 -75232066 + L2a LINE L2 2954 3145 -281 6 1228 279 247 0 0 chr3 84368597 84368670 -75231113 - L1MA4 LINE L1 -406 5894 5822 6 1228 1320 92 16 5 chr3 84369470 84369655 -75230128 + B2_Mm2 SINE B2 2 188 -7 6 1228 1354 62 39 0 chr3 84370618 84370797 -75228986 + B2_Mm2 SINE B2 5 190 -5 6 1228 907 119 16 28 chr3 84370816 84370998 -75228785 + G-rich Low_complexity Low_complexity 1 180 0 6 1228 407 298 86 19 chr3 84370998 84371413 -75228370 + L1M5 LINE L1 3784 4213 -1667 6 1228 555 286 104 6 chr3 84371629 84371812 -75227971 + RMER30 DNA MER1_type 1 201 -1 6 1228 294 254 106 38 chr3 84371895 84372132 -75227651 + L1MC4a LINE L1 5985 6237 -1645 6 1228 539 292 342 5 chr3 84372339 84372730 -75227053 + L1MC4a LINE L1 6478 6999 -1043 6 1228 385 240 202 51 chr3 84372847 84373005 -75226778 + B4A SINE B4 6 187 -105 6 1228 268 284 125 18 chr3 84373107 84373226 -75226557 + B1F SINE Alu 16 141 -8 6 1228 491 263 143 95 chr3 84373241 84373565 -75226218 + L1MC4a LINE L1 7125 7511 -371 6 1228 1418 184 50 88 chr3 84373565 84373964 -75225819 + ORR1C2 LTR MaLR 1 384 0 6 1228 491 263 143 95 chr3 84373964 84374052 -75225731 + L1MC4a LINE L1 7512 7577 -305 6 1228 842 197 0 0 chr3 84374052 84374194 -75225589 + B1_Mur2 SINE Alu 1 142 -7 6 1228 491 263 143 95 chr3 84374194 84374443 -75225340 + L1MC4a LINE L1 7578 7819 -63 6 1228 779 194 35 7 chr3 84374874 84375019 -75224764 + B3A SINE B2 1 149 -49 6 1228 300 91 0 0 chr3 84375029 84375073 -75224710 + (CA)n Simple_repeat Simple_repeat 2 45 0 6 1228 623 228 14 0 chr3 84375099 84375244 -75224539 + B1_Mus2 SINE Alu 1 147 0 6 1228 819 141 42 7 chr3 84375571 84375714 -75224069 - B1_Mus1 SINE Alu 0 148 1 6 1228 209 260 13 0 chr3 84376089 84376166 -75223617 + (TA)n Simple_repeat Simple_repeat 2 79 0 6 1228 6601 113 17 18 chr3 84376743 84378161 -75221622 + Lx LINE L1 5234 6653 -1 6 1228 392 165 190 0 chr3 84378161 84378240 -75221543 + ID_B1 SINE B4 124 217 -7 6 1228 695 285 99 78 chr3 84379575 84379953 -75219830 + L1MC3 LINE L1 6650 7014 -771 6 1228 606 249 105 12 chr3 84379953 84380124 -75219659 + B3A SINE B2 5 191 -7 7 1228 695 285 99 78 chr3 84380124 84380548 -75219235 + L1MC3 LINE L1 7015 7476 -309 6 1228 910 161 0 0 chr3 84380548 84380685 -75219098 + B1_Mus1 SINE Alu 2 138 -10 7 1228 695 285 99 78 chr3 84380685 84380813 -75218970 + L1MC3 LINE L1 7477 7599 -186 6 1228 23 33 0 0 chr3 84380932 84380962 -75218821 + AT_rich Low_complexity Low_complexity 1 30 0 7 1228 23 0 0 0 chr3 84380996 84381019 -75218764 + AT_rich Low_complexity Low_complexity 1 23 0 7 1228 325 241 59 24 chr3 84381199 84381284 -75218499 + B3A SINE B2 1 88 -110 7 1228 1900 177 123 38 chr3 84381496 84381838 -75217945 + RLTR11A2 LTR ERVK 18 399 -128 7 1228 2811 55 91 3 chr3 84381838 84382202 -75217581 + MTA_Mm LTR MaLR 1 396 0 7 1228 1900 177 123 38 chr3 84382202 84382329 -75217454 + RLTR11A2 LTR ERVK 400 527 0 7 1228 475 236 146 0 chr3 84382909 84383053 -75216730 + MER3 DNA MER1_type 29 193 -16 7 1228 324 290 138 81 chr3 84383731 84383837 -75215946 + MIR SINE MIR 30 138 -124 7 1228 1166 154 51 14 chr3 84383837 84384054 -75215729 - URR1B DNA MER1_type 0 225 1 7 1228 324 290 138 81 chr3 84384054 84384157 -75215626 + MIR SINE MIR 139 251 -11 7 1228 289 295 89 48 chr3 84384970 84385116 -75214667 - Charlie4z DNA MER1_type 0 167 16 7 1228 212 211 35 0 chr3 84385279 84385336 -75214447 + A-rich Low_complexity Low_complexity 2 60 0 7 1228 207 0 0 0 chr3 84385748 84385771 -75214012 + (CA)n Simple_repeat Simple_repeat 2 24 0 7 1228 441 0 0 0 chr3 84385771 84385819 -75213964 + (GA)n Simple_repeat Simple_repeat 2 50 0 7 1228 324 0 0 0 chr3 84388298 84388334 -75211449 + (TG)n Simple_repeat Simple_repeat 2 37 0 7 1228 191 136 68 0 chr3 84388397 84388456 -75211327 + CT-rich Low_complexity Low_complexity 2 64 0 7 1228 385 167 273 18 chr3 84388894 84389004 -75210779 + B1_Mur4 SINE Alu 11 148 -2 7 1228 200 59 29 0 chr3 84389007 84389041 -75210742 + (CAAAA)n Simple_repeat Simple_repeat 1 35 0 7 1228 2573 148 116 22 chr3 84389062 84389449 -75210334 + RMER1B Other Other 405 954 -112 7 1228 261 0 0 0 chr3 84389449 84389478 -75210305 + (TTTTG)n Simple_repeat Simple_repeat 3 31 0 7 1228 2573 140 122 23 chr3 84389478 84389586 -75210197 + RMER1B Other Other 955 1065 -1 7 1228 184 167 20 20 chr3 84389591 84389640 -75210143 + GA-rich Low_complexity Low_complexity 3 51 0 7 1228 429 181 0 95 chr3 84389675 84389689 -75210094 + MT2B LTR ERVL 153 155 -446 7 1228 946 70 14 34 chr3 84389689 84389837 -75209946 + B1_Mus1 SINE Alu 2 146 -2 7 1228 192 40 0 0 chr3 84389956 84389981 -75209802 + (TTCA)n Simple_repeat Simple_repeat 3 27 0 7 1228 240 35 0 0 chr3 84391250 84391279 -75208504 + (CCCCCA)n Simple_repeat Simple_repeat 2 30 0 7 1228 21 0 0 0 chr3 84392301 84392322 -75207461 + AT_rich Low_complexity Low_complexity 1 21 0 7 1228 183 42 0 0 chr3 84392324 84392348 -75207435 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 7 1228 532 311 140 19 chr3 84392456 84392764 -75207019 + MLT1E2 LTR MaLR 219 563 -64 7 1228 352 10 0 132 chr3 84392818 84392932 -75206851 + (CCCCAG)n Simple_repeat Simple_repeat 2 100 0 7 1228 1738 21 0 0 chr3 84393194 84393387 -75206396 - B2_Mm1a SINE B2 0 193 1 7 1228 873 175 0 0 chr3 84393918 84394061 -75205722 - B1_Mur4 SINE Alu -7 143 1 7 1228 561 243 175 0 chr3 84394567 84394744 -75205039 + B3 SINE B2 9 216 0 7 1228 790 184 0 0 chr3 84394769 84394905 -75204878 + B1_Mus2 SINE Alu 1 136 -11 7 1228 299 343 20 10 chr3 84395318 84395418 -75204365 + PB1D10 SINE Alu 17 117 0 7 1228 469 279 101 81 chr3 84395664 84395922 -75203861 + B4A SINE B4 9 271 -21 7 1228 236 261 64 83 chr3 84396071 84396167 -75203616 + PB1D10 SINE Alu 3 94 -23 7 1228 762 105 0 0 chr3 84396179 84396293 -75203490 + (GA)n Simple_repeat Simple_repeat 1 114 0 7 1228 477 296 9 0 chr3 84399695 84399810 -75199973 - PB1D7 SINE Alu -2 118 3 7 1228 1593 108 7 34 chr3 84400208 84400477 -75199306 + Lx LINE L1 6393 6654 0 7 1228 201 94 0 0 chr3 84401783 84401815 -75197968 + (CCCCCA)n Simple_repeat Simple_repeat 4 35 0 7 1228 180 0 0 0 chr3 84402568 84402588 -75197195 + (TTA)n Simple_repeat Simple_repeat 2 21 0 7 1228 1167 75 0 0 chr3 84403768 84403914 -75195869 + B1_Mus1 SINE Alu 3 148 0 7 1228 567 0 0 0 chr3 84404784 84404847 -75194936 + (TC)n Simple_repeat Simple_repeat 2 64 0 7 1228 486 0 0 0 chr3 84404847 84404900 -75194883 + (TG)n Simple_repeat Simple_repeat 1 54 0 7 1228 241 271 0 17 chr3 84404900 84404960 -75194823 - ID4_ SINE ID -13 70 12 7 1228 322 259 12 0 chr3 84404998 84405079 -75194704 + ID4 SINE ID 2 83 0 7 1228 298 214 11 11 chr3 84406958 84407048 -75192735 + CT-rich Low_complexity Low_complexity 4 93 0 7 1228 402 253 11 0 chr3 84407058 84407149 -75192634 - B1F SINE Alu -20 129 38 7 1228 201 108 0 0 chr3 84407215 84407252 -75192531 + (CCCCG)n Simple_repeat Simple_repeat 1 37 0 7 1228 1353 201 104 45 chr3 84407667 84408043 -75191740 - RMER10B LTR ERVL 0 398 1 7 1228 613 306 95 49 chr3 84408151 84408523 -75191260 - MTE2a LTR MaLR -21 398 18 7 1228 304 254 0 0 chr3 84408588 84408651 -75191132 - L2a LINE L2 -25 3401 3339 7 1228 560 272 110 23 chr3 84408715 84408933 -75190850 + B4 SINE B4 2 238 -54 7 1228 345 100 0 0 chr3 84408936 84408986 -75190797 + (CA)n Simple_repeat Simple_repeat 2 51 0 7 1228 22 0 0 0 chr3 84409143 84409165 -75190618 + AT_rich Low_complexity Low_complexity 1 22 0 7 1228 1210 203 161 133 chr3 84409220 84409737 -75190046 + MT2A LTR ERVL 3 533 0 7 1228 3002 123 117 4 chr3 84409742 84410297 -75189486 + ORR1B2-int LTR MaLR 5 622 -887 7 153 744 216 0 20 chr3 84410303 84410454 -75189329 + B1_Mur3 SINE Alu 1 148 -1 7 1229 746 118 13 42 chr3 84410481 84410635 -75189148 + ORR1B2-int LTR MaLR 1369 1527 -53 7 1229 450 117 26 0 chr3 84410635 84410712 -75189071 + ORR1B2 LTR MaLR 1 79 -288 7 1229 210 222 0 0 chr3 84412237 84412282 -75187501 + G-rich Low_complexity Low_complexity 1 45 0 7 1229 529 233 53 15 chr3 84412644 84412775 -75187008 + B1F2 SINE Alu 2 137 -12 7 1229 210 143 0 0 chr3 84412779 84412814 -75186969 + (CA)n Simple_repeat Simple_repeat 2 36 0 7 1229 428 287 0 10 chr3 84412952 84413054 -75186729 + PB1D10 SINE Alu 2 102 -15 7 1229 1121 20 0 26 chr3 84413070 84413226 -75186557 + (TAGA)n Simple_repeat Simple_repeat 2 153 0 7 1229 201 269 0 0 chr3 84413227 84413305 -75186478 + GA-rich Low_complexity Low_complexity 1 78 0 7 1229 2284 122 19 0 chr3 84413305 84413626 -75186157 + ORR1A2 LTR MaLR 1 327 0 7 1229 1517 138 80 180 chr3 84414354 84414560 -75185223 + ORR1C2 LTR MaLR 2 189 -195 7 1229 1251 29 22 22 chr3 84414560 84414739 -75185044 + (TCTCCC)n Simple_repeat Simple_repeat 1 179 0 7 1229 1517 138 80 180 chr3 84414739 84414955 -75184828 + ORR1C2 LTR MaLR 190 382 -2 7 1229 294 286 81 81 chr3 84414993 84415179 -75184604 + MLT1D LTR MaLR 1 186 -319 7 1229 344 263 19 78 chr3 84415142 84415185 -75184598 + B4A SINE B4 50 86 -206 7 1229 496 222 74 0 chr3 84415185 84415293 -75184490 + PB1D10 SINE Alu 2 117 0 7 1229 189 0 0 0 chr3 84415589 84415610 -75184173 + (CA)n Simple_repeat Simple_repeat 1 21 0 7 1229 1364 249 25 70 chr3 84415980 84416224 -75183559 + MTEa LTR MaLR 1 236 -143 7 1229 1536 172 123 0 chr3 84416224 84416556 -75183227 - ORR1D1 LTR MaLR -1 373 1 7 1229 1364 249 25 70 chr3 84416556 84416708 -75183075 + MTEa LTR MaLR 237 379 0 7 1229 1142 95 0 0 chr3 84417660 84417807 -75181976 + B1_Mus1 SINE Alu 2 148 0 7 1229 540 251 92 11 chr3 84418201 84418386 -75181397 - B3 SINE B2 -16 200 1 7 1229 279 0 0 0 chr3 84418405 84418436 -75181347 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 7 1229 874 154 0 0 chr3 84418439 84418575 -75181208 - B1_Mur4 SINE Alu -13 137 2 7 1229 243 0 0 0 chr3 84418607 84418634 -75181149 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 7 1229 1096 259 102 27 chr3 84418895 84419268 -75180515 + MTD LTR MaLR 5 405 -14 7 1229 223 333 127 6 chr3 84420254 84420411 -75179372 + L2a LINE L2 731 906 -2513 7 1229 360 248 0 0 chr3 84420698 84420799 -75178984 + (TG)n Simple_repeat Simple_repeat 1 101 0 7 1229 254 267 0 118 chr3 84420812 84420897 -75178886 - RSINE1 SINE B4 -3 162 88 7 1229 204 111 0 0 chr3 84421558 84421594 -75178189 + (C)n Simple_repeat Simple_repeat 1 36 0 7 1229 244 268 0 27 chr3 84421716 84421789 -75177994 + CT-rich Low_complexity Low_complexity 3 73 0 7 1229 368 329 104 40 chr3 84421795 84422521 -75177262 + L2a LINE L2 2574 3348 -78 7 1229 1430 79 0 21 chr3 84422821 84423014 -75176769 - B2_Mm2 SINE B2 -4 191 3 7 1229 21 36 0 0 chr3 84423410 84423438 -75176345 + AT_rich Low_complexity Low_complexity 1 28 0 7 1229 5269 154 20 30 chr3 84423559 84424470 -75175313 - RMER19B LTR ERVK 0 902 1 7 1229 647 182 47 0 chr3 84424836 84425006 -75174777 + CT-rich Low_complexity Low_complexity 2 179 0 7 1229 504 0 0 0 chr3 84425049 84425105 -75174678 + (TTTC)n Simple_repeat Simple_repeat 1 56 0 7 1229 1516 68 5 0 chr3 84425142 84425334 -75174449 - B2_Mm1a SINE B2 0 193 1 7 1229 253 237 0 0 chr3 84425452 84425511 -75174272 + (TA)n Simple_repeat Simple_repeat 1 59 0 7 1229 1210 54 0 20 chr3 84425556 84425707 -75174076 + B1_Mus1 SINE Alu 1 148 0 7 1229 219 224 0 0 chr3 84425707 84425748 -75174035 + A-rich Low_complexity Low_complexity 1 41 0 7 1229 1405 88 5 0 chr3 84425748 84425940 -75173843 + B2_Mm1t SINE B2 1 193 0 7 1229 219 224 0 0 chr3 84425940 84425956 -75173827 + A-rich Low_complexity Low_complexity 42 57 0 7 1229 266 326 133 10 chr3 84426431 84426626 -75173157 - MIRb SINE MIR -17 251 33 7 1229 375 318 64 0 chr3 84427231 84427341 -75172442 - B1F SINE Alu -27 122 6 7 1229 268 264 20 90 chr3 84427257 84427357 -75172426 - MT2B2 LTR ERVL -340 244 152 7 1229 301 225 123 12 chr3 84427382 84427463 -75172320 + PB1 SINE Alu 13 102 -25 7 1229 230 233 10 126 chr3 84427463 84427479 -75172304 + MT2B LTR ERVL 191 261 -340 7 1229 256 261 31 0 chr3 84427559 84427624 -75172159 + ID4 SINE ID 1 67 -16 8 1229 408 260 0 0 chr3 84427871 84428129 -75171654 + (TG)n Simple_repeat Simple_repeat 1 258 0 8 1229 397 165 99 0 chr3 84428842 84428933 -75170850 + ID_B1 SINE B4 88 187 -37 8 1229 1314 89 0 0 chr3 84428933 84429422 -75170361 + (CA)n Simple_repeat Simple_repeat 1 489 0 8 1229 219 69 0 0 chr3 84429475 84429504 -75170279 + (TTTA)n Simple_repeat Simple_repeat 1 29 0 8 1229 888 144 0 35 chr3 84430220 84430364 -75169419 + B1_Mur3 SINE Alu 1 139 -10 8 1229 351 0 0 0 chr3 84430364 84430403 -75169380 + (CTAA)n Simple_repeat Simple_repeat 3 41 0 8 1229 474 129 0 0 chr3 84430516 84430601 -75169182 + (TCC)n Simple_repeat Simple_repeat 1 85 0 8 1229 234 0 0 0 chr3 84431361 84431387 -75168396 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 8 1229 761 125 65 14 chr3 84431389 84431527 -75168256 - B1_Mur3 SINE Alu 0 149 5 8 1229 1204 75 0 0 chr3 84431670 84431817 -75167966 + B1_Mus2 SINE Alu 1 147 0 8 1229 1225 98 23 0 chr3 84431855 84432028 -75167755 - B2_Mm2 SINE B2 -17 178 2 8 1229 22 0 0 0 chr3 84432199 84432221 -75167562 + AT_rich Low_complexity Low_complexity 1 22 0 8 1229 537 278 121 0 chr3 84432277 84432475 -75167308 + L1MC3 LINE L1 6956 7177 -608 8 1229 730 284 37 15 chr3 84432549 84432839 -75166944 + L1MC3 LINE L1 7369 7773 -222 8 1229 378 272 18 72 chr3 84432925 84433036 -75166747 - RSINE1 SINE B4 -27 138 34 8 1229 1486 220 138 25 chr3 84433061 84433509 -75166274 - RMER15 LTR ERVL -21 554 56 8 1229 246 170 0 19 chr3 84433566 84433620 -75166163 - RMER15 LTR ERVL -522 53 1 8 1229 531 0 0 0 chr3 84433660 84433719 -75166064 + (TATAA)n Simple_repeat Simple_repeat 5 63 0 8 1229 317 217 0 12 chr3 84433719 84433803 -75165980 + (TATG)n Simple_repeat Simple_repeat 3 85 0 8 1229 1204 61 0 0 chr3 84433896 84434043 -75165740 + B1_Mus1 SINE Alu 2 148 0 8 1229 260 127 346 51 chr3 84434057 84434161 -75165622 - B2_Mm2 SINE B2 -14 181 47 8 1229 958 127 133 0 chr3 84434223 84434381 -75165402 - B2_Mm1t SINE B2 -14 179 1 8 1229 195 42 0 0 chr3 84435031 84435055 -75164728 + (TTG)n Simple_repeat Simple_repeat 1 24 0 8 1229 318 240 159 10 chr3 84435070 84435183 -75164600 + B3A SINE B2 34 159 -57 8 1229 378 0 0 0 chr3 84435189 84435231 -75164552 + (CA)n Simple_repeat Simple_repeat 2 43 0 8 1229 799 47 19 0 chr3 84435285 84435392 -75164391 - B2_Mm2 SINE B2 -41 154 46 8 1229 451 184 118 85 chr3 84435400 84435631 -75164152 - RLTR20D LTR ERVK -278 256 1 8 1229 563 251 21 4 chr3 84435631 84435781 -75164002 + B3A SINE B2 32 185 -31 8 1229 489 34 0 0 chr3 84435783 84435842 -75163941 + (CA)n Simple_repeat Simple_repeat 2 60 0 8 1229 327 268 0 11 chr3 84435873 84435960 -75163823 + PB1D10 SINE Alu 24 109 -8 8 1229 207 0 0 0 chr3 84436074 84436097 -75163686 + (T)n Simple_repeat Simple_repeat 1 23 0 8 1229 1156 57 0 0 chr3 84436098 84436238 -75163545 - B1_Mus2 SINE Alu -3 144 5 8 1229 468 0 0 0 chr3 84436861 84436913 -75162870 + (CA)n Simple_repeat Simple_repeat 1 52 0 8 1229 315 0 0 0 chr3 84436913 84436947 -75162836 + (GA)n Simple_repeat Simple_repeat 2 36 0 8 1229 215 152 22 0 chr3 84436956 84437002 -75162781 + (CA)n Simple_repeat Simple_repeat 2 48 0 8 1229 1307 13 13 0 chr3 84437036 84437192 -75162591 + (TTTC)n Simple_repeat Simple_repeat 1 158 0 8 1229 1067 96 6 0 chr3 84437192 84437348 -75162435 - B2_Mm1a SINE B2 -35 158 2 8 1229 537 226 0 0 chr3 84437549 84437651 -75162132 - B1F SINE Alu -36 113 12 8 1229 711 274 0 12 chr3 84438278 84438444 -75161339 + RSINE1 SINE B4 2 165 0 8 1229 390 241 12 0 chr3 84438486 84438569 -75161214 - PB1D10 SINE Alu -25 92 9 8 1229 893 224 52 103 chr3 84438854 84439203 -75160580 - MTEa LTR MaLR -16 363 33 8 1229 940 39 0 45 chr3 84439381 84439514 -75160269 + B1_Mus1 SINE Alu 10 136 -12 8 1229 540 156 6 135 chr3 84439514 84439536 -75160247 + ID_B1 SINE B4 90 224 0 8 1229 210 301 33 66 chr3 84439742 84439863 -75159920 + MIR SINE MIR 109 225 -37 8 1229 30 45 0 0 chr3 84440130 84440174 -75159609 + AT_rich Low_complexity Low_complexity 1 44 0 8 1229 867 126 39 15 chr3 84440311 84440509 -75159274 + RMER19A LTR ERVK 542 711 -26 8 1229 340 278 45 53 chr3 84440678 84440811 -75158972 + B4A SINE B4 31 162 -130 8 1229 423 0 0 0 chr3 84441238 84441285 -75158498 + (CA)n Simple_repeat Simple_repeat 2 48 0 8 1229 1099 83 21 0 chr3 84441366 84441510 -75158273 + B1_Mm SINE Alu 1 147 0 8 1229 240 111 0 0 chr3 84441515 84441551 -75158232 + (A)n Simple_repeat Simple_repeat 1 36 0 8 1229 295 247 13 0 chr3 84442223 84442300 -75157483 - PB1D10 SINE Alu -33 84 7 8 1229 306 231 75 25 chr3 84442543 84442663 -75157120 + MER57D LTR ERV1 284 409 -2 8 1229 249 33 0 0 chr3 84442668 84442698 -75157085 + (TTA)n Simple_repeat Simple_repeat 1 30 0 8 1229 601 268 31 30 chr3 84442698 84442885 -75156898 - B3A SINE B2 -14 202 14 8 1229 222 208 0 0 chr3 84442982 84443030 -75156753 + (CCCTA)n Simple_repeat Simple_repeat 3 50 0 8 1229 580 226 7 20 chr3 84443468 84443617 -75156166 - RMER30 DNA MER1_type -47 155 9 8 1229 4298 125 193 38 chr3 84445055 84445836 -75153947 - RMER19B LTR ERVK 0 902 1 8 1229 495 265 16 49 chr3 84446172 84446295 -75153488 - PB1D9 SINE Alu 0 120 2 8 1229 284 263 131 0 chr3 84446299 84446398 -75153385 + L1MA4 LINE L1 5784 5895 -405 8 1229 338 269 19 9 chr3 84446416 84446521 -75153262 + (TA)n Simple_repeat Simple_repeat 1 106 0 8 1229 297 0 0 0 chr3 84446661 84446694 -75153089 + (TG)n Simple_repeat Simple_repeat 1 33 0 8 1229 383 0 21 0 chr3 84446695 84446742 -75153041 + (GA)n Simple_repeat Simple_repeat 1 48 0 8 1229 3997 43 4 18 chr3 84447290 84447786 -75151997 - L1Md_F2 LINE L1 0 6582 6094 8 1229 5771 53 0 0 chr3 84447786 84448685 -75151098 + L1Md_F2 LINE L1 5143 6041 -541 8 1229 419 252 30 0 chr3 84450480 84450579 -75149204 + MER5A DNA MER1_type 48 149 -40 8 1229 192 40 0 0 chr3 84450917 84450942 -75148841 + (TG)n Simple_repeat Simple_repeat 2 26 0 8 1229 231 114 0 0 chr3 84451060 84451095 -75148688 + (TG)n Simple_repeat Simple_repeat 1 35 0 8 1229 252 77 0 0 chr3 84451095 84451134 -75148649 + (CAGA)n Simple_repeat Simple_repeat 2 40 0 8 1229 304 276 0 0 chr3 84451162 84451220 -75148563 - RSINE1 SINE B4 -105 60 3 8 1229 425 352 112 0 chr3 84451455 84451651 -75148132 - L3b LINE CR1 -255 227 10 8 1229 224 158 0 0 chr3 84451859 84451897 -75147886 - MER5B DNA MER1_type 0 178 141 8 1229 1217 68 0 0 chr3 84451987 84452133 -75147650 + B1_Mus2 SINE Alu 2 147 0 8 1229 252 0 0 0 chr3 84452133 84452161 -75147622 + (A)n Simple_repeat Simple_repeat 1 28 0 8 1229 440 328 34 11 chr3 84452348 84452527 -75147256 - MER5A DNA MER1_type -4 185 3 8 1229 396 0 0 0 chr3 84452746 84452790 -75146993 + (TC)n Simple_repeat Simple_repeat 2 45 0 8 1229 279 0 0 0 chr3 84452790 84452820 -75146963 + (TG)n Simple_repeat Simple_repeat 2 32 0 8 1229 309 26 0 0 chr3 84453346 84453384 -75146399 + (GGGTG)n Simple_repeat Simple_repeat 4 41 0 8 1229 875 135 61 160 chr3 84453391 84453603 -75146180 - RMER2 LTR ERV1 -376 191 1 8 1229 4571 167 67 14 chr3 84453861 84454718 -75145065 - RMER19B LTR ERVK 0 902 1 8 1229 257 203 0 17 chr3 84454873 84454933 -75144850 - L1MA8 LINE L1 -167 6124 6066 8 1229 321 218 26 0 chr3 84455011 84455089 -75144694 - L1MA8 LINE L1 -200 6091 6012 8 1229 333 233 0 14 chr3 84455215 84455289 -75144494 - PB1 SINE Alu -2 125 53 8 1229 449 301 8 61 chr3 84455381 84455512 -75144271 - RSINE1 SINE B4 -19 146 23 8 1229 229 276 17 33 chr3 84455506 84455566 -75144217 - ID4_ SINE ID -23 60 2 8 1229 238 336 118 7 chr3 84455683 84455827 -75143956 + MLT1K LTR MaLR 408 567 -28 8 1229 1307 88 5 11 chr3 84455846 84456030 -75143753 - B2_Mm2 SINE B2 -12 183 1 8 1229 393 58 0 0 chr3 84456412 84456464 -75143319 + (CA)n Simple_repeat Simple_repeat 1 52 0 8 1229 267 300 25 0 chr3 84457874 84457954 -75141829 + C-rich Low_complexity Low_complexity 5 86 0 8 1229 284 256 0 13 chr3 84458301 84458380 -75141403 - MER20 DNA MER1_type 0 219 142 8 1229 322 315 37 86 chr3 84458738 84458901 -75140882 + B4 SINE B4 24 178 -114 8 1229 258 291 11 11 chr3 84458909 84458996 -75140787 + RSINE1 SINE B4 75 161 -4 8 1229 420 20 0 0 chr3 84459721 84459770 -75140013 + (CA)n Simple_repeat Simple_repeat 2 50 0 8 1229 1337 105 21 5 chr3 84459817 84460009 -75139774 - B2_Mm2 SINE B2 0 195 1 8 1229 789 110 0 0 chr3 84460019 84460137 -75139646 + (TTTC)n Simple_repeat Simple_repeat 2 119 0 8 1229 1235 68 0 0 chr3 84460682 84460830 -75138953 - B1_Mus1 SINE Alu 0 148 1 8 1229 647 220 53 0 chr3 84461650 84461782 -75138001 + RSINE1 SINE B4 10 148 -17 8 1229 195 100 0 0 chr3 84461786 84461816 -75137967 + (CA)n Simple_repeat Simple_repeat 2 31 0 8 1229 761 264 5 66 chr3 84462006 84462217 -75137566 - B3A SINE B2 0 198 1 8 1229 602 215 104 0 chr3 84462870 84463005 -75136778 + B3 SINE B2 1 149 -67 8 1229 234 0 0 0 chr3 84463007 84463033 -75136750 + (CA)n Simple_repeat Simple_repeat 1 26 0 8 1229 249 109 0 0 chr3 84463034 84463080 -75136703 + (GA)n Simple_repeat Simple_repeat 1 46 0 8 1229 414 202 0 12 chr3 84463348 84463428 -75136355 - ID4 SINE ID 0 83 5 8 1229 735 12 0 0 chr3 84463754 84463838 -75135945 + (CA)n Simple_repeat Simple_repeat 2 85 0 8 1229 200 286 0 76 chr3 84464167 84464311 -75135472 + G-rich Low_complexity Low_complexity 3 135 0 9 1229 200 316 13 26 chr3 84464591 84464669 -75135114 - MER5B DNA MER1_type -79 99 23 8 1229 2463 102 3 6 chr3 84465973 84466300 -75133483 - ORR1A2 LTR MaLR -1 326 1 9 1229 219 69 0 0 chr3 84467019 84467048 -75132735 + (TG)n Simple_repeat Simple_repeat 1 29 0 9 1229 303 71 0 0 chr3 84467528 84467570 -75132213 + (TG)n Simple_repeat Simple_repeat 1 42 0 9 1229 401 173 14 36 chr3 84467608 84467746 -75132037 + (TG)n Simple_repeat Simple_repeat 1 135 0 9 1229 468 99 0 0 chr3 84467845 84467916 -75131867 + (TG)n Simple_repeat Simple_repeat 1 71 0 9 1229 485 0 33 0 chr3 84469259 84469319 -75130464 + (GGATG)n Simple_repeat Simple_repeat 4 65 0 9 1229 264 289 155 6 chr3 84469709 84469890 -75129893 - MER3 DNA MER1_type 0 209 2 9 1229 366 235 294 0 chr3 84470987 84471000 -75128783 - RMER1B Other Other -13 1053 1035 9 1229 399 56 0 0 chr3 84471000 84471054 -75128729 + (TG)n Simple_repeat Simple_repeat 1 54 0 9 1229 366 219 168 15 chr3 84471054 84471189 -75128594 - RMER1B Other Other -32 1034 805 9 1229 363 60 0 0 chr3 84471534 84471584 -75128199 + (TG)n Simple_repeat Simple_repeat 2 51 0 9 1229 336 64 0 0 chr3 84472908 84472955 -75126828 + (CAA)n Simple_repeat Simple_repeat 1 47 0 9 1229 356 271 40 40 chr3 84473973 84474073 -75125710 - PB1D7 SINE Alu 0 120 21 9 1229 332 231 90 0 chr3 84474571 84474649 -75125134 + PB1 SINE Alu 27 111 -16 9 1229 462 96 0 0 chr3 84474909 84474982 -75124801 + (CCAA)n Simple_repeat Simple_repeat 3 75 0 9 1229 367 325 82 77 chr3 84475021 84475351 -75124432 - ORR1E LTR MaLR -27 352 1 9 1229 673 255 0 56 chr3 84475391 84475426 -75124357 + B3A SINE B2 1 27 -171 9 1229 622 154 0 255 chr3 84475426 84475626 -75124157 - B1_Mur3 SINE Alu 0 149 1 9 1229 673 257 1 59 chr3 84475626 84475758 -75124025 + B3A SINE B2 28 153 -45 9 1229 528 59 0 0 chr3 84475758 84475826 -75123957 + (CA)n Simple_repeat Simple_repeat 2 69 0 9 1229 263 297 33 127 chr3 84475826 84475869 -75123914 + B2_Mm2 SINE B2 152 191 -4 9 1229 505 231 19 0 chr3 84477144 84477248 -75122535 + PB1D10 SINE Alu 1 106 -11 9 1229 1153 261 22 0 chr3 84477265 84477537 -75122246 + B4A SINE B4 3 280 -12 9 1229 243 294 0 0 chr3 84477552 84477603 -75122180 + (CACG)n Simple_repeat Simple_repeat 1 51 0 9 1229 434 300 138 18 chr3 84477721 84478003 -75121780 + Tigger11a DNA MER2_type 210 525 -210 9 1229 526 268 31 0 chr3 84477994 84478121 -75121662 - ID_B1 SINE B4 -55 169 39 9 1229 1288 34 0 0 chr3 84478139 84478287 -75121496 - B1_Mus1 SINE Alu 0 148 1 9 1229 216 86 0 0 chr3 84478322 84478357 -75121426 + (A)n Simple_repeat Simple_repeat 1 35 0 9 1229 336 83 0 0 chr3 84478522 84478570 -75121213 + (TG)n Simple_repeat Simple_repeat 2 49 0 9 1229 245 274 202 0 chr3 84478800 84478884 -75120899 + U8 snRNA snRNA 28 128 -8 9 1229 802 143 7 7 chr3 84478957 84479105 -75120678 + GA-rich Low_complexity Low_complexity 3 150 0 9 1229 607 321 6 0 chr3 84479205 84479289 -75120494 + B4A SINE B4 1 85 -207 9 1229 332 289 51 26 chr3 84479289 84479406 -75120377 + PB1D9 SINE Alu 1 120 0 9 1229 182 250 0 14 chr3 84479453 84479526 -75120257 + G-rich Low_complexity Low_complexity 3 74 0 9 1229 303 308 29 18 chr3 84480131 84480287 -75119496 - ORR1D2 LTR MaLR 0 374 215 9 1229 395 340 43 0 chr3 84480617 84480758 -75119025 - B1F SINE Alu 0 149 3 9 1229 786 138 0 8 chr3 84480843 84480967 -75118816 - B1_Mus1 SINE Alu -24 124 2 9 1229 387 0 0 0 chr3 84481495 84481538 -75118245 + (TG)n Simple_repeat Simple_repeat 2 44 0 9 1229 299 389 11 0 chr3 84481712 84481802 -75117981 + MER5A DNA MER1_type 73 163 -26 9 1229 268 331 118 7 chr3 84482101 84482253 -75117530 - MER5B DNA MER1_type -2 176 8 9 1229 633 251 121 5 chr3 84482264 84482275 -75117508 - ID_B1 SINE B4 -60 232 208 9 1229 416 255 11 11 chr3 84482275 84482370 -75117413 - PB1D10 SINE Alu -6 111 17 9 1229 633 251 121 5 chr3 84482370 84482451 -75117332 - ID_B1 SINE B4 -60 207 1 9 1229 273 105 224 17 chr3 84482852 84482910 -75116873 + tRNA-Ala-GCY_ tRNA tRNA 3 72 -3 9 1229 663 177 12 114 chr3 84484323 84484489 -75115294 - B1_Mur3 SINE Alu 0 149 1 9 1229 300 83 0 0 chr3 84484820 84484868 -75114915 + (GA)n Simple_repeat Simple_repeat 2 49 0 9 1229 331 216 27 0 chr3 84484872 84484946 -75114837 + ID4 SINE ID 5 80 -3 9 1229 267 297 54 11 chr3 84485749 84485841 -75113942 + PB1D10 SINE Alu 1 96 -21 9 1229 270 163 0 20 chr3 84486041 84486091 -75113692 - MLT1A0 LTR MaLR -285 80 32 9 1229 1318 264 71 23 chr3 84486483 84486836 -75112947 - MTEa LTR MaLR -5 374 5 9 1229 1248 63 25 0 chr3 84486913 84487072 -75112711 - B2_Mm2 SINE B2 -31 164 2 9 1229 1077 47 6 29 chr3 84487268 84487442 -75112341 + (TCTA)n Simple_repeat Simple_repeat 3 172 0 9 1229 681 116 11 44 chr3 84487454 84487634 -75112149 + (TCTA)n Simple_repeat Simple_repeat 3 176 0 9 1229 298 186 0 0 chr3 84489104 84489163 -75110620 + (TG)n Simple_repeat Simple_repeat 1 59 0 9 1229 456 167 0 0 chr3 84489163 84489259 -75110524 + (TA)n Simple_repeat Simple_repeat 1 96 0 9 1229 396 0 0 0 chr3 84489272 84489316 -75110467 + (TG)n Simple_repeat Simple_repeat 1 44 0 9 1229 489 295 21 83 chr3 84489348 84489492 -75110291 - RSINE1 SINE B4 -28 137 3 9 1229 359 193 100 22 chr3 84489906 84489996 -75109787 - PB1 SINE Alu -30 97 1 9 1229 315 0 0 0 chr3 84490291 84490326 -75109457 + (TATG)n Simple_repeat Simple_repeat 2 36 0 9 1229 191 36 0 35 chr3 84490337 84490366 -75109417 + (TCCA)n Simple_repeat Simple_repeat 1 28 0 9 1229 360 0 0 0 chr3 84490695 84490735 -75109048 + (CA)n Simple_repeat Simple_repeat 1 40 0 9 1229 414 0 0 0 chr3 84490735 84490780 -75109003 + (GA)n Simple_repeat Simple_repeat 2 47 0 9 1229 408 20 0 0 chr3 84491625 84491674 -75108109 + (TG)n Simple_repeat Simple_repeat 1 49 0 9 1229 598 257 176 6 chr3 84491783 84491959 -75107824 + ID_B1 SINE B4 2 207 -17 9 1229 371 345 0 0 chr3 84493292 84493379 -75106404 + RSINE1 SINE B4 55 141 -24 9 1229 235 324 56 97 chr3 84494026 84494221 -75105562 - LTR58 LTR ERV1 -481 198 12 9 1229 306 0 0 0 chr3 84494819 84494853 -75104930 + (TG)n Simple_repeat Simple_repeat 1 34 0 9 1229 31 26 0 0 chr3 84495288 84495326 -75104457 + AT_rich Low_complexity Low_complexity 1 38 0 9 1229 459 303 84 80 chr3 84495444 84495731 -75104052 - B4A SINE B4 -2 290 3 9 1229 256 174 0 0 chr3 84495838 84495884 -75103899 + B4A SINE B4 196 241 -51 9 1229 318 115 0 0 chr3 84495926 84495987 -75103796 + (CA)n Simple_repeat Simple_repeat 2 62 0 9 1229 277 109 18 18 chr3 84498535 84498591 -75101192 + (TCCC)n Simple_repeat Simple_repeat 3 58 0 9 1229 345 187 189 0 chr3 84498612 84498686 -75101097 - PB1D10 SINE Alu -2 115 29 9 1229 26 82 0 0 chr3 84498727 84498788 -75100995 + AT_rich Low_complexity Low_complexity 1 61 0 9 1229 328 234 49 14 chr3 84498827 84498970 -75100813 + (TATAA)n Simple_repeat Simple_repeat 1 148 0 9 1229 261 0 0 0 chr3 84499792 84499821 -75099962 + (TG)n Simple_repeat Simple_repeat 2 30 0 9 1229 233 315 39 82 chr3 84501090 84501259 -75098524 - MIR SINE MIR -70 192 44 1 1229 473 291 58 69 chr3 84501404 84501695 -75098088 + B4A SINE B4 5 292 0 2 1229 238 269 0 0 chr3 84501697 84501749 -75098034 + (CA)n Simple_repeat Simple_repeat 1 52 0 3 1229 303 262 0 0 chr3 84501777 84501838 -75097945 - tRNA-Ala-GCY_ tRNA tRNA -7 68 8 4 1229 301 200 216 21 chr3 84502123 84502220 -75097563 + PB1D7 SINE Alu 5 120 0 5 1229 538 253 7 10 chr3 84502231 84502365 -75097418 + B1F2 SINE Alu 3 133 -14 6 1229 1042 215 107 42 chr3 84502383 84502795 -75096988 - RMER15 LTR ERVL -41 534 9 7 1229 233 277 0 0 chr3 84502833 84502880 -75096903 - RMER15 LTR ERVL -524 51 5 8 1229 3237 44 15 7 chr3 84502880 84503288 -75096495 - IAPLTR2a LTR ERVK 0 411 1 9 1229 340 319 52 54 chr3 84503337 84503591 -75096192 + L1MC LINE L1 5176 5432 -808 1 1229 572 172 0 8 chr3 84503807 84503924 -75095859 + CT-rich Low_complexity Low_complexity 4 119 0 1 1229 336 216 40 0 chr3 84504089 84504163 -75095620 - ID4 SINE ID -5 78 2 1 1229 259 286 0 79 chr3 84504593 84504669 -75095114 - ID4 SINE ID -9 74 5 1 1229 186 143 0 0 chr3 84504675 84504710 -75095073 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1 1229 396 0 0 0 chr3 84504866 84504910 -75094873 + (CA)n Simple_repeat Simple_repeat 1 44 0 1 1229 207 0 0 0 chr3 84505329 84505352 -75094431 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 1229 347 297 176 16 chr3 84508040 84508228 -75091555 + ID_B1 SINE B4 3 220 -4 1 1229 360 0 0 0 chr3 84508507 84508547 -75091236 + (TTTTG)n Simple_repeat Simple_repeat 1 40 0 1 1229 434 306 52 47 chr3 84508669 84508861 -75090922 - Lx8 LINE L1 -309 7164 6972 1 1229 455 125 25 0 chr3 84509890 84509970 -75089813 + (TCCC)n Simple_repeat Simple_repeat 1 82 0 2 1229 648 222 7 82 chr3 84510513 84510660 -75089123 + RSINE1 SINE B4 6 141 -24 2 1229 324 0 0 0 chr3 84510663 84510699 -75089084 + (CA)n Simple_repeat Simple_repeat 2 37 0 2 1229 339 225 25 0 chr3 84510707 84510787 -75088996 + ID4 SINE ID 2 83 0 2 1229 1178 186 29 0 chr3 84510984 84511194 -75088589 - B3 SINE B2 0 216 1 2 1229 664 261 46 73 chr3 84512215 84512434 -75087349 + B3 SINE B2 2 214 -2 2 1229 361 204 16 129 chr3 84512971 84513095 -75086688 + MT2B LTR ERVL 155 264 -337 2 1229 782 147 16 0 chr3 84512998 84513127 -75086656 + B1_Mur3 SINE Alu 16 146 -3 2 1229 254 259 0 17 chr3 84513223 84513282 -75086501 + B3A SINE B2 20 77 -121 2 1229 508 270 119 38 chr3 84513280 84513465 -75086318 + B4A SINE B4 93 292 0 2 1229 270 217 34 17 chr3 84513467 84513584 -75086199 + (CATATA)n Simple_repeat Simple_repeat 4 122 0 3 1229 272 27 27 0 chr3 84513647 84513684 -75086099 + (CAAA)n Simple_repeat Simple_repeat 1 38 0 3 1229 276 282 112 75 chr3 84514025 84514186 -75085597 - MLT1G1 LTR MaLR -1 488 322 3 1229 629 275 45 96 chr3 84514215 84514520 -75085263 - MLT1G1 LTR MaLR -296 299 3 3 1229 376 242 31 10 chr3 84515030 84515126 -75084657 - RSINE1 SINE B4 -64 101 4 3 1229 368 237 186 0 chr3 84515161 84515279 -75084504 - B1_Mur3 SINE Alu -9 140 1 3 1229 493 267 51 108 chr3 84515292 84515451 -75084332 - ID_B1 SINE B4 0 224 77 3 1229 318 50 0 0 chr3 84515691 84515731 -75084052 + (GGA)n Simple_repeat Simple_repeat 2 41 0 3 1229 526 239 20 55 chr3 84515811 84515957 -75083826 + B1F1 SINE Alu 1 141 -8 3 1229 192 77 0 0 chr3 84515957 84515983 -75083800 + (GGA)n Simple_repeat Simple_repeat 1 26 0 3 1229 966 133 0 27 chr3 84515984 84516169 -75083614 + GA-rich Low_complexity Low_complexity 1 180 0 3 1229 228 339 29 73 chr3 84516347 84516484 -75083299 + ORR1E LTR MaLR 44 174 -185 4 1229 477 0 0 0 chr3 84516721 84516774 -75083009 + (TCC)n Simple_repeat Simple_repeat 2 54 0 4 1229 813 230 16 5 chr3 84516956 84517127 -75082656 + B3A SINE B2 5 178 -20 4 1229 387 0 0 0 chr3 84517127 84517170 -75082613 + (CA)n Simple_repeat Simple_repeat 2 44 0 4 1229 813 230 16 5 chr3 84517170 84517190 -75082593 + B3A SINE B2 179 197 -1 4 1229 2021 28 0 0 chr3 84517202 84517433 -75082350 + L1_Mm LINE L1 5357 5616 -687 4 1229 8482 33 3 1 chr3 84517433 84518426 -75081357 + L1Md_F2 LINE L1 5588 6582 0 4 1229 1069 241 4 15 chr3 84518426 84518468 -75081315 + L1_Mm LINE L1 5617 5655 -648 4 1229 1244 219 30 83 chr3 84519334 84519732 -75080051 + MTEb LTR MaLR 3 379 0 4 1229 244 254 0 0 chr3 84520137 84520196 -75079587 + (TGGG)n Simple_repeat Simple_repeat 2 60 0 4 1229 189 0 0 0 chr3 84520470 84520491 -75079292 + (GA)n Simple_repeat Simple_repeat 2 22 0 4 1229 478 270 98 33 chr3 84520500 84520653 -75079130 + B3 SINE B2 51 213 -3 4 1229 201 132 0 0 chr3 84521249 84521287 -75078496 + (TCTG)n Simple_repeat Simple_repeat 3 40 0 5 1229 203 0 0 36 chr3 84521738 84521766 -75078017 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 5 1229 1303 151 0 98 chr3 84522360 84522647 -75077136 - RMER10B LTR ERVL -121 277 19 5 1229 189 107 0 0 chr3 84522670 84522698 -75077085 + (T)n Simple_repeat Simple_repeat 1 28 0 5 1229 316 282 8 57 chr3 84522955 84523079 -75076704 + L1MA4 LINE L1 4177 4294 -1846 5 1229 380 20 20 0 chr3 84523168 84523217 -75076566 + (CA)n Simple_repeat Simple_repeat 1 50 0 5 1229 261 0 0 0 chr3 84523217 84523245 -75076538 + (GA)n Simple_repeat Simple_repeat 2 30 0 5 1229 1126 283 82 29 chr3 84523276 84523596 -75076187 + L1MA4 LINE L1 4286 4627 -1516 5 1229 180 0 0 0 chr3 84523596 84523616 -75076167 + (GAAAA)n Simple_repeat Simple_repeat 4 23 0 5 1229 1126 283 82 29 chr3 84523616 84523844 -75075939 + L1MA4 LINE L1 4628 4862 -1281 5 1229 372 43 0 0 chr3 84523908 84523954 -75075829 + (GA)n Simple_repeat Simple_repeat 1 46 0 5 1229 339 164 0 0 chr3 84524069 84524130 -75075653 + (TA)n Simple_repeat Simple_repeat 2 62 0 5 1229 540 45 0 0 chr3 84524183 84524250 -75075533 + (GGA)n Simple_repeat Simple_repeat 1 67 0 6 1229 1838 296 54 37 chr3 84524296 84525280 -75074503 + L1MA4 LINE L1 4857 5926 -374 5 1229 694 283 124 18 chr3 84525683 84526021 -75073762 - MTD LTR MaLR 0 379 1 6 1229 429 248 7 107 chr3 84526586 84526726 -75073057 - ID_B1 SINE B4 0 224 99 6 1229 518 256 32 8 chr3 84526606 84526732 -75073051 - B1F SINE Alu -9 140 12 6 1229 230 268 257 52 chr3 84526737 84526923 -75072860 - MIR SINE MIR -40 228 9 6 1229 250 297 7 7 chr3 84527443 84527524 -75072259 + GA-rich Low_complexity Low_complexity 1 81 0 6 1229 184 370 58 46 chr3 84527795 84527968 -75071815 + L2c LINE L2 3154 3328 -59 6 1229 498 350 53 38 chr3 84528286 84528550 -75071233 - MLT1J LTR MaLR -7 505 238 6 1229 590 276 109 71 chr3 84528567 84528913 -75070870 - ORR1E LTR MaLR -4 375 1 6 1229 2214 135 29 6 chr3 84529785 84530136 -75069647 - ORR1B2 LTR MaLR -8 359 1 6 1229 1256 77 0 29 chr3 84530159 84530321 -75069462 + B2_Mm2 SINE B2 1 162 -33 7 1229 198 71 0 0 chr3 84530321 84530349 -75069434 + (TAAA)n Simple_repeat Simple_repeat 2 29 0 7 1229 1256 77 0 29 chr3 84530349 84530361 -75069422 + B2_Mm2 SINE B2 163 170 -25 7 1229 7926 67 1 5 chr3 84530520 84531852 -75067931 - L1Md_F2 LINE L1 -12 6570 5261 7 1229 309 330 29 8 chr3 84532463 84532583 -75067200 + MIR3 SINE MIR 58 185 -23 7 1229 1275 109 124 0 chr3 84532971 84533172 -75066611 - URR1A DNA MER1_type 0 226 1 7 1229 273 332 56 87 chr3 84533507 84533738 -75066045 - ORR1C1 LTR MaLR -138 240 17 7 1229 207 0 0 0 chr3 84533742 84533765 -75066018 + (CAA)n Simple_repeat Simple_repeat 2 24 0 7 1229 237 276 198 9 chr3 84533788 84533894 -75065889 - MTE-int LTR MaLR -119 1461 1336 7 1229 255 280 36 107 chr3 84533904 84534072 -75065711 - MTE-int LTR MaLR -523 1057 902 7 1229 232 326 43 0 chr3 84534198 84534290 -75065493 - MTE-int LTR MaLR -666 914 819 7 1229 604 265 0 0 chr3 84534293 84534425 -75065358 - MLT1A0 LTR MaLR -233 132 1 7 1229 467 339 53 5 chr3 84534445 84534632 -75065151 - MIR SINE MIR -65 197 2 7 1229 214 205 0 0 chr3 84535653 84535692 -75064091 + T-rich Low_complexity Low_complexity 1 39 0 8 1229 180 0 0 0 chr3 84536056 84536076 -75063707 + (CTCG)n Simple_repeat Simple_repeat 1 20 0 8 1229 499 320 57 136 chr3 84537489 84537894 -75061889 - MLT1B LTR MaLR -12 378 6 8 1229 405 312 49 81 chr3 84538285 84538587 -75061196 + ORR1E LTR MaLR 51 340 -30 8 1229 465 289 76 93 chr3 84538927 84539228 -75060555 + ORR1E LTR MaLR 58 353 -6 8 1229 246 81 0 0 chr3 84539367 84539404 -75060379 + (GA)n Simple_repeat Simple_repeat 2 38 0 8 1229 225 0 0 0 chr3 84540084 84540109 -75059674 + (TG)n Simple_repeat Simple_repeat 2 26 0 8 1229 234 0 0 0 chr3 84540260 84540286 -75059497 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 8 1229 309 118 0 0 chr3 84540527 84540578 -75059205 + (TG)n Simple_repeat Simple_repeat 1 51 0 8 1229 692 249 34 56 chr3 84540596 84540891 -75058892 - B4 SINE B4 0 292 1 8 1230 513 0 0 0 chr3 84541569 84541626 -75058157 + (TC)n Simple_repeat Simple_repeat 1 57 0 9 1230 324 0 0 0 chr3 84541818 84541854 -75057929 + (TC)n Simple_repeat Simple_repeat 1 36 0 9 1230 198 0 0 0 chr3 84542029 84542051 -75057732 + (TG)n Simple_repeat Simple_repeat 2 23 0 9 1230 299 308 21 42 chr3 84542095 84542190 -75057593 - B4 SINE B4 -199 93 1 8 1230 287 345 126 20 chr3 84542732 84542930 -75056853 - LTR33 LTR ERVL -66 449 231 9 1230 507 271 8 0 chr3 84542943 84543076 -75056707 + L1MB2 LINE L1 5706 5839 -332 9 1230 648 67 0 0 chr3 84543448 84543538 -75056245 + (TCTA)n Simple_repeat Simple_repeat 1 90 0 9 1230 1056 84 35 0 chr3 84543719 84543861 -75055922 + B1_Mus1 SINE Alu 2 148 0 9 1230 561 259 24 123 chr3 84545660 84545813 -75053970 + RMER30 DNA MER1_type 13 156 -46 9 1230 663 224 0 52 chr3 84545813 84545968 -75053815 - B1_Mur2 SINE Alu -2 147 1 9 1230 561 259 24 123 chr3 84545968 84546025 -75053758 + RMER30 DNA MER1_type 157 202 0 9 1230 230 188 88 59 chr3 84546143 84546211 -75053572 - PB1D9 SINE Alu -41 79 10 9 1230 4354 55 30 2 chr3 84546390 84547114 -75052669 - L1_Mus2 LINE L1 -495 6502 5419 1 1230 3194 68 2 36 chr3 84547114 84547555 -75052228 + L1_Mus2 LINE L1 6140 6565 -1 1 1230 354 319 55 51 chr3 84549250 84549461 -75050322 + MIR SINE MIR 12 225 -37 1 1230 736 261 21 31 chr3 84550388 84550582 -75049201 - B3A SINE B2 0 198 7 1 1230 506 165 175 0 chr3 84550625 84550728 -75049055 + B1_Mur2 SINE Alu 1 121 -28 1 1230 1414 83 16 0 chr3 84550743 84550935 -75048848 + B2_Mm2 SINE B2 1 195 0 1 1230 2152 275 89 28 chr3 84551027 84551753 -75048030 - Lx8 LINE L1 -8 7465 6695 1 1230 1212 279 67 11 chr3 84551750 84552123 -75047660 + Lx8 LINE L1 6316 6709 -764 1 1230 338 261 124 50 chr3 84552847 84553008 -75046775 + L1MB8 LINE L1 5896 6068 -110 1 1230 803 231 73 51 chr3 84553326 84553600 -75046183 + B4A SINE B4 2 281 -11 1 1230 542 51 0 13 chr3 84553619 84553698 -75046085 + (GA)n Simple_repeat Simple_repeat 1 78 0 1 1230 1244 120 114 5 chr3 84554241 84554442 -75045341 - URR1A DNA MER1_type 0 226 4 1 1230 613 252 136 44 chr3 84554485 84554630 -75045153 + B4A SINE B4 2 170 -122 1 1230 3565 20 0 2 chr3 84554630 84555027 -75044756 - MTA_Mm LTR MaLR 0 396 1 1 1230 10029 7 0 0 chr3 84555027 84556125 -75043658 - MTA_Mm-int LTR MaLR 0 1098 1 1 1230 3556 15 2 2 chr3 84556125 84556521 -75043262 - MTA_Mm LTR MaLR 0 396 1 1 1230 646 294 62 11 chr3 84556585 84556764 -75043019 + B3 SINE B2 2 189 -27 1 1230 318 279 13 0 chr3 84556811 84556890 -75042893 + RSINE1 SINE B4 32 111 -54 1 1230 2280 151 94 29 chr3 84556962 84557439 -75042344 + RMER2 LTR ERV1 60 567 0 1 1230 225 255 20 0 chr3 84557439 84557490 -75042293 + B4 SINE B4 236 287 -5 1 1230 373 338 75 6 chr3 84558126 84558287 -75041496 - B4 SINE B4 -40 252 81 1 1230 1681 275 45 16 chr3 84558306 84558764 -75041019 - Lx6 LINE L1 -72 7388 6562 1 1230 225 82 429 0 chr3 84558740 84558789 -75040994 - Lx6 LINE L1 -581 6879 6810 1 1230 294 150 0 32 chr3 84558791 84558853 -75040930 - B4 SINE B4 -199 93 34 1 1230 223 270 62 31 chr3 84558859 84558924 -75040859 - ID_B1 SINE B4 -124 100 34 1 1230 243 0 0 0 chr3 84559103 84559130 -75040653 + (TG)n Simple_repeat Simple_repeat 2 28 0 1 1230 255 288 61 0 chr3 84559139 84559205 -75040578 - RSINE1 SINE B4 -43 122 53 1 1230 265 196 0 0 chr3 84559228 84559279 -75040504 - RLTR12B LTR ERVK -431 97 47 1 1230 378 0 0 0 chr3 84559345 84559387 -75040396 + (TC)n Simple_repeat Simple_repeat 1 42 0 1 1230 351 0 0 0 chr3 84559387 84559425 -75040358 + (CA)n Simple_repeat Simple_repeat 1 39 0 1 1230 405 0 0 0 chr3 84559693 84559738 -75040045 + (TTTA)n Simple_repeat Simple_repeat 2 46 0 1 1230 1124 59 0 0 chr3 84559738 84559874 -75039909 - B1_Mus1 SINE Alu -11 137 2 1 1230 237 297 0 13 chr3 84560065 84560140 -75039643 - BC1_Mm scRNA scRNA -61 91 18 1 1230 294 253 24 0 chr3 84560587 84560670 -75039113 + ID_B1 SINE B4 91 175 -49 1 1230 2489 120 19 5 chr3 84560732 84561101 -75038682 + ORR1C1 LTR MaLR 1 374 -4 1 1230 308 280 11 2 chr3 84561829 84561932 -75037851 + MTEa LTR MaLR 278 379 0 1 1230 240 368 116 0 chr3 84562491 84562586 -75037197 + Tigger5 DNA MER2_type 137 242 -2164 1 1230 270 310 8 34 chr3 84562564 84562681 -75037102 + Tigger5 DNA MER2_type 2276 2389 -17 1 1230 4901 77 59 216 chr3 84562996 84563647 -75036136 + L1VL2 LINE L1 115 754 -5581 1 1230 1033 82 0 7 chr3 84563647 84563794 -75035989 + B1_Mus1 SINE Alu 3 148 0 1 1230 4901 77 59 216 chr3 84563794 84563930 -75035853 + L1VL2 LINE L1 755 889 -5446 1 1230 1017 102 7 0 chr3 84563930 84564067 -75035716 + B1_Mus1 SINE Alu 1 138 -10 1 1230 207 0 0 0 chr3 84564068 84564091 -75035692 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 1230 4901 59 10 23 chr3 84564091 84564345 -75035438 + L1VL2 LINE L1 890 1131 -2484 1 1230 1217 60 82 29 chr3 84564342 84564548 -75035235 + L1VL2 LINE L1 1610 1826 -1789 1 1230 252 286 0 0 chr3 84564706 84564776 -75035007 - PB1D10 SINE Alu -21 96 27 1 1230 313 239 227 0 chr3 84565653 84565741 -75034042 - PB1D10 SINE Alu -7 110 3 1 1230 403 267 28 71 chr3 84565922 84566063 -75033720 - ID_B1 SINE B4 -4 220 86 1 1230 29 0 0 0 chr3 84566066 84566095 -75033688 + AT_rich Low_complexity Low_complexity 1 29 0 1 1230 37267 35 0 1 chr3 84566095 84571256 -75028527 - L1Md_T LINE L1 0 6585 1426 1 1230 810 53 0 18 chr3 84571255 84571369 -75028414 - L1Md_T LINE L1 -6381 141 30 1 1230 217 259 16 65 chr3 84571503 84571565 -75028218 + ID4_ SINE ID 16 74 -9 1 1230 1565 223 25 14 chr3 84571584 84571939 -75027844 + ORR1B2 LTR MaLR 1 359 -8 1 1230 715 157 37 0 chr3 84571984 84572118 -75027665 + B3 SINE B2 57 195 -21 1 1230 225 278 14 14 chr3 84572165 84572238 -75027545 + MIR SINE MIR 111 183 -79 1 1230 692 95 0 33 chr3 84572504 84572624 -75027159 + (TTCC)n Simple_repeat Simple_repeat 3 118 0 1 1230 1258 48 0 0 chr3 84572630 84572777 -75027006 - B1_Mm SINE Alu 0 147 1 1 1230 572 255 29 7 chr3 84572792 84572932 -75026851 + ID_B1 SINE B4 85 223 -1 1 1230 240 232 78 29 chr3 84573772 84573874 -75025909 + MER112 DNA MER1_type 8 114 -147 1 1230 521 188 63 9 chr3 84574735 84574846 -75024937 - PB1D9 SINE Alu 0 120 5 1 1230 316 262 12 0 chr3 84574879 84574959 -75024824 + PB1D10 SINE Alu 17 97 -20 1 1230 232 247 13 25 chr3 84574969 84575048 -75024735 + GA-rich Low_complexity Low_complexity 2 79 0 1 1230 568 230 50 14 chr3 84575071 84575212 -75024571 + B1_Mur2 SINE Alu 2 147 -2 1 1230 924 65 0 0 chr3 84575370 84575493 -75024290 + B1_Mus1 SINE Alu 1 123 -25 1 1230 389 70 18 0 chr3 84575550 84575607 -75024176 + (TCC)n Simple_repeat Simple_repeat 3 60 0 1 1230 899 144 7 20 chr3 84575778 84575914 -75023869 + B1_Mur2 SINE Alu 2 136 -13 1 1230 186 43 0 0 chr3 84575914 84575937 -75023846 + (CAAAA)n Simple_repeat Simple_repeat 1 23 0 1 1230 899 144 7 20 chr3 84575937 84575949 -75023834 + B1_Mur2 SINE Alu 137 148 -1 1 1230 297 314 38 38 chr3 84576376 84576482 -75023301 - PB1D10 SINE Alu -13 107 2 1 1230 189 292 132 9 chr3 84576644 84576758 -75023025 + MIRb SINE MIR 83 210 -58 1 1230 360 43 0 0 chr3 84577187 84577233 -75022550 + (TTTTG)n Simple_repeat Simple_repeat 4 49 0 1 1230 219 271 14 14 chr3 84577236 84577307 -75022476 - ID4_ SINE ID -10 73 3 1 1230 213 189 0 36 chr3 84577475 84577530 -75022253 + ID4_ SINE ID 2 54 -29 1 1230 218 196 0 19 chr3 84577532 84577584 -75022199 + ID4_ SINE ID 3 53 -30 1 1230 741 256 26 0 chr3 84577587 84577782 -75022001 + ID_B1 SINE B4 3 202 -22 1 1230 267 149 101 29 chr3 84577791 84577860 -75021923 - MER113A DNA MER1_type -211 103 30 1 1230 180 0 0 0 chr3 84577980 84578000 -75021783 + (A)n Simple_repeat Simple_repeat 1 20 0 1 1230 228 308 85 78 chr3 84580661 84580720 -75019063 + MT2B LTR ERVL 103 162 -439 1 1230 417 227 24 106 chr3 84580720 84580843 -75018940 + PB1D10 SINE Alu 4 116 -1 1 1230 891 183 4 116 chr3 84581179 84581420 -75018363 + B3 SINE B2 1 214 -2 1 1230 21 0 0 0 chr3 84581431 84581452 -75018331 + AT_rich Low_complexity Low_complexity 1 21 0 1 1230 180 0 0 0 chr3 84581460 84581480 -75018303 + (CCA)n Simple_repeat Simple_repeat 3 22 0 1 1230 911 243 21 0 chr3 84581493 84581682 -75018101 + B3A SINE B2 1 193 -5 1 1230 261 0 0 0 chr3 84581746 84581775 -75018008 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1 1230 351 0 0 0 chr3 84582617 84582656 -75017127 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 1230 1001 128 0 0 chr3 84582656 84582797 -75016986 - B1_Mur4 SINE Alu -8 142 2 1 1230 430 268 81 44 chr3 84582937 84583097 -75016686 - B3A SINE B2 -6 192 27 1 1230 556 191 191 16 chr3 84583119 84583304 -75016479 - B3A SINE B2 -1 215 1 1 1230 226 191 0 0 chr3 84583305 84583347 -75016436 - B3A SINE B2 -156 42 1 1 1230 450 0 0 0 chr3 84583693 84583743 -75016040 + (TC)n Simple_repeat Simple_repeat 2 51 0 1 1230 269 185 0 15 chr3 84583749 84583815 -75015968 + (TG)n Simple_repeat Simple_repeat 1 65 0 1 1230 558 286 69 25 chr3 84583860 84584136 -75015647 - B4A SINE B4 -2 290 3 1 1230 359 293 9 138 chr3 84584363 84584573 -75015210 + L1MC5 LINE L1 6692 6874 -1087 1 1230 440 340 6 58 chr3 84584672 84584813 -75014970 + RSINE1 SINE B4 3 135 -30 1 1230 2302 78 28 3 chr3 84584813 84585134 -75014649 + ORR1A4 LTR MaLR 1 329 0 1 1230 440 340 6 58 chr3 84585134 84585164 -75014619 + RSINE1 SINE B4 136 165 0 1 1230 411 231 114 102 chr3 84585296 84585448 -75014335 + L1MC LINE L1 4270 4412 -1734 1 1230 189 0 0 0 chr3 84585448 84585469 -75014314 + (CAAAA)n Simple_repeat Simple_repeat 1 21 0 1 1230 411 231 114 102 chr3 84585469 84585571 -75014212 + L1MC LINE L1 4413 4527 -1619 1 1230 522 286 135 22 chr3 84585688 84585917 -75013866 - ORR1D2 LTR MaLR -115 255 1 1 1230 189 107 0 0 chr3 84586220 84586248 -75013535 + (TATATG)n Simple_repeat Simple_repeat 2 29 0 1 1230 615 266 0 0 chr3 84586292 84586420 -75013363 - RSINE1 SINE B4 -37 128 1 1 1230 334 304 159 0 chr3 84586778 84586916 -75012867 + B3A SINE B2 1 160 -38 1 1230 261 0 0 0 chr3 84586920 84586949 -75012834 + (CA)n Simple_repeat Simple_repeat 1 29 0 1 1230 498 252 41 0 chr3 84587174 84587297 -75012486 - MLT1A LTR MaLR 0 374 247 1 1230 609 178 0 22 chr3 84587363 84587547 -75012236 + (TG)n Simple_repeat Simple_repeat 1 180 0 1 1230 716 313 82 19 chr3 84587549 84587816 -75011967 - B4A SINE B4 0 292 9 1 1230 233 214 32 106 chr3 84587733 84587827 -75011956 - B2_Mm2 SINE B2 -106 89 3 1 1230 725 259 82 14 chr3 84589083 84589291 -75010492 + B4 SINE B4 2 223 -69 1 1230 306 0 0 0 chr3 84589291 84589325 -75010458 + (A)n Simple_repeat Simple_repeat 1 34 0 1 1230 637 88 20 0 chr3 84589350 84589452 -75010331 + (TC)n Simple_repeat Simple_repeat 1 104 0 1 1230 222 37 0 0 chr3 84589452 84589479 -75010304 + (TG)n Simple_repeat Simple_repeat 2 28 0 1 1230 287 179 15 0 chr3 84589525 84589592 -75010191 + GA-rich Low_complexity Low_complexity 1 68 0 1 1230 3349 55 0 2 chr3 84589693 84590090 -75009693 - MTA_Mm LTR MaLR 0 396 1 1 1230 5038 117 24 0 chr3 84591010 84591730 -75008053 + RMER19A LTR ERVK 1 737 0 2 1230 522 225 0 23 chr3 84592551 84592683 -75007100 - Lx9 LINE L1 0 7644 7516 2 1230 754 230 0 0 chr3 84592932 84593071 -75006712 + B1_Mur1 SINE Alu 1 139 -10 2 1230 343 286 10 39 chr3 84593121 84593223 -75006560 - FAM SINE Alu -76 235 137 2 1230 243 0 0 0 chr3 84593913 84593940 -75005843 + (TG)n Simple_repeat Simple_repeat 1 27 0 2 1230 405 267 59 79 chr3 84593997 84594042 -75005741 + L1ME2 LINE L1 4940 4976 -1170 2 1230 234 0 0 0 chr3 84594042 84594068 -75005715 + (TAA)n Simple_repeat Simple_repeat 2 27 0 2 1230 415 248 35 39 chr3 84594068 84594225 -75005558 + L1ME2 LINE L1 4977 5137 -1009 2 1230 726 280 97 66 chr3 84594236 84594448 -75005335 + L1ME2 LINE L1 5424 5648 -516 2 1230 513 47 0 0 chr3 84594448 84594512 -75005271 + (TC)n Simple_repeat Simple_repeat 1 64 0 2 1230 726 280 97 66 chr3 84594512 84594751 -75005032 + L1ME2 LINE L1 5649 5889 -275 2 1230 2464 92 33 39 chr3 84594830 84595191 -75004592 + RLTR10D LTR ERVK 1 359 0 2 1230 1049 92 10 151 chr3 84595191 84595397 -75004386 + IAP-d-int LTR ERVK 1 177 -6365 2 1230 802 199 6 6 chr3 84595391 84595548 -75004235 + IAP-d-int LTR ERVK 347 503 -6039 2 1230 1917 189 62 6 chr3 84595548 84595904 -75003879 + IAP-d-int LTR ERVK 5007 5382 -1160 2 1230 6501 89 3 24 chr3 84595891 84596779 -75003004 + IAP-d-int LTR ERVK 5673 6542 0 2 1230 2570 80 28 39 chr3 84596779 84597141 -75002642 + RLTR10D LTR ERVK 1 358 -1 2 1230 25 0 0 0 chr3 84597298 84597323 -75002460 + GC_rich Low_complexity Low_complexity 1 25 0 2 1230 622 263 95 46 chr3 84597331 84597594 -75002189 + Lx5 LINE L1 6769 7044 -6 2 1230 1421 179 71 43 chr3 84597610 84597961 -75001822 + ORR1C2 LTR MaLR 17 377 -7 2 1230 324 0 0 0 chr3 84599078 84599114 -75000669 + (TG)n Simple_repeat Simple_repeat 1 36 0 2 1230 471 35 0 0 chr3 84599114 84599170 -75000613 + (GA)n Simple_repeat Simple_repeat 1 57 0 2 1230 9353 167 56 16 chr3 84599506 84602101 -74997682 + Lx5 LINE L1 4309 7048 -2 2 1230 1118 188 13 129 chr3 84602751 84602832 -74996951 - MT2B LTR ERVL -4 597 541 2 1230 468 0 0 0 chr3 84602832 84602884 -74996899 + (CA)n Simple_repeat Simple_repeat 2 53 0 2 1230 1118 188 13 129 chr3 84602884 84603119 -74996664 - MT2B LTR ERVL -61 540 318 2 1230 406 250 0 0 chr3 84603123 84603211 -74996572 - B4A SINE B4 -200 92 5 2 1230 1131 264 109 3 chr3 84603543 84603893 -74995890 + MLT1B LTR MaLR 1 387 -3 2 1230 245 251 19 0 chr3 84604448 84604520 -74995263 - ID SINE ID -217 75 2 2 1230 1640 158 134 14 chr3 84604657 84604780 -74995003 - Lx9 LINE L1 0 7644 7510 2 1230 342 0 0 0 chr3 84604780 84604818 -74994965 + (TC)n Simple_repeat Simple_repeat 1 38 0 2 1230 243 0 0 0 chr3 84604818 84604844 -74994939 + (CA)n Simple_repeat Simple_repeat 1 27 0 2 1230 1640 158 134 14 chr3 84604844 84605085 -74994698 - Lx9 LINE L1 -135 7509 7236 2 1230 260 300 67 0 chr3 84605272 84605362 -74994421 - HAL1 LINE L1 -2375 132 37 2 1230 451 272 32 0 chr3 84605896 84606021 -74993762 + L1MC4 LINE L1 6481 6609 -1433 2 1230 337 284 0 0 chr3 84606230 84606318 -74993465 + MER53 DNA hAT 101 188 -5 2 1230 514 176 0 0 chr3 84606322 84606407 -74993376 + L1MC4 LINE L1 6820 6904 -1138 2 1230 666 243 33 0 chr3 84606418 84606570 -74993213 + RSINE1 SINE B4 1 157 -8 2 1230 601 259 111 0 chr3 84606591 84606753 -74993030 + B3A SINE B2 2 181 -17 2 1230 272 286 31 16 chr3 84606824 84606952 -74992831 + L1MC4 LINE L1 6955 7084 -958 2 1230 365 282 267 32 chr3 84607064 84607375 -74992408 + L1MC4 LINE L1 7333 7716 -326 2 1230 180 111 0 0 chr3 84607776 84607803 -74991980 + (GAAA)n Simple_repeat Simple_repeat 3 29 0 2 1230 1073 39 16 0 chr3 84608178 84608307 -74991476 + B1_Mm SINE Alu 1 131 -16 2 1230 486 281 28 79 chr3 84608357 84608535 -74991248 + ORR1E LTR MaLR 7 175 -184 2 1230 195 42 0 0 chr3 84608746 84608770 -74991013 + (CTA)n Simple_repeat Simple_repeat 2 25 0 2 1230 356 383 31 26 chr3 84609261 84609489 -74990294 - B4A SINE B4 -2 290 62 2 1230 268 244 66 11 chr3 84610369 84610460 -74989323 - MLT1J1 LTR MaLR -303 141 46 2 1230 29 0 0 0 chr3 84611198 84611227 -74988556 + AT_rich Low_complexity Low_complexity 1 29 0 2 1230 288 176 0 0 chr3 84611333 84611384 -74988399 + L1ME2z LINE L1 6321 6371 -73 2 1230 781 173 15 0 chr3 84611557 84611690 -74988093 - B1_Mur3 SINE Alu -14 135 1 2 1230 33 0 0 0 chr3 84611790 84611823 -74987960 + AT_rich Low_complexity Low_complexity 1 33 0 2 1230 328 266 76 53 chr3 84611828 84611959 -74987824 - RSINE1 SINE B4 -31 134 1 2 1230 3723 55 20 18 chr3 84612310 84612807 -74986976 + L1_Mus3 LINE L1 6138 6635 -3 2 1230 1745 149 87 18 chr3 84613268 84613664 -74986119 - RMER4B LTR ERVK -2 464 71 2 1230 273 300 114 15 chr3 84614012 84614144 -74985639 + MIRc SINE MIR 1 145 -123 2 1230 722 95 0 0 chr3 84614688 84614783 -74985000 + B2_Mm2 SINE B2 1 95 -100 2 1230 893 222 74 127 chr3 84614778 84615105 -74984678 + MT2A LTR ERVL 45 483 -118 2 1230 620 277 89 36 chr3 84615423 84615861 -74983922 + L1ME3B LINE L1 5705 6165 -75 2 1230 1145 76 0 0 chr3 84616050 84616195 -74983588 - B1_Mus1 SINE Alu 0 148 4 2 1230 378 0 0 0 chr3 84617386 84617428 -74982355 + (CA)n Simple_repeat Simple_repeat 2 43 0 2 1230 351 0 0 0 chr3 84617428 84617467 -74982316 + (GA)n Simple_repeat Simple_repeat 1 39 0 2 1230 321 135 0 0 chr3 84618260 84618312 -74981471 + (CAG)n Simple_repeat Simple_repeat 3 54 0 2 1230 224 246 15 15 chr3 84618412 84618478 -74981305 + GA-rich Low_complexity Low_complexity 1 66 0 2 1230 206 220 0 0 chr3 84618771 84618830 -74980953 + (CCCCAG)n Simple_repeat Simple_repeat 5 63 0 2 1230 21 82 0 0 chr3 84619298 84619347 -74980436 + GC_rich Low_complexity Low_complexity 1 49 0 2 1230 342 0 0 0 chr3 84620292 84620330 -74979453 + (TC)n Simple_repeat Simple_repeat 2 39 0 2 1230 659 196 13 40 chr3 84620972 84621121 -74978662 - B1_Mur4 SINE Alu 0 150 6 2 1230 317 258 29 118 chr3 84621011 84621147 -74978636 - B4 SINE B4 -94 198 75 2 1230 198 0 0 0 chr3 84621207 84621229 -74978554 + (T)n Simple_repeat Simple_repeat 1 22 0 2 1230 412 231 41 49 chr3 84621637 84621760 -74978023 + RSINE1 SINE B4 3 124 -41 2 1230 694 75 19 0 chr3 84621779 84621885 -74977898 + (TAG)n Simple_repeat Simple_repeat 3 110 0 2 1230 751 274 75 0 chr3 84622572 84622758 -74977025 - ID_B1 SINE B4 -20 204 5 2 1230 1172 42 0 20 chr3 84623188 84623334 -74976449 - B1_Mus1 SINE Alu -5 143 1 2 1230 217 140 17 34 chr3 84623541 84623569 -74976214 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2 1230 564 194 137 15 chr3 84623569 84623700 -74976083 + B1_Mus1 SINE Alu 1 147 -1 2 1230 217 140 17 34 chr3 84623700 84623730 -74976053 + (CAAA)n Simple_repeat Simple_repeat 1 31 0 2 1230 403 344 79 24 chr3 84624278 84624442 -74975341 - MER58A DNA MER1_type -51 173 1 2 1230 1406 144 192 13 chr3 84624682 84624999 -74974784 - ORR1D1 LTR MaLR 0 374 1 2 1230 215 231 0 84 chr3 84625076 84625147 -74974636 - ID4 SINE ID -11 72 8 2 1230 21 36 0 0 chr3 84625593 84625621 -74974162 + AT_rich Low_complexity Low_complexity 1 28 0 2 1230 349 215 15 0 chr3 84625687 84625752 -74974031 - MER2B DNA MER2_type -35 301 236 2 1230 459 255 0 94 chr3 84625770 84625887 -74973896 + RSINE1 SINE B4 34 139 -26 2 1230 221 216 20 0 chr3 84625925 84625976 -74973807 + (TA)n Simple_repeat Simple_repeat 1 52 0 2 1230 319 282 92 106 chr3 84625976 84626118 -74973665 - MER2B DNA MER2_type -102 234 90 2 1230 180 0 0 0 chr3 84626118 84626138 -74973645 + (CAA)n Simple_repeat Simple_repeat 2 21 0 2 1230 319 282 92 106 chr3 84626138 84626213 -74973570 - MER2B DNA MER2_type -247 89 20 2 1230 293 324 57 0 chr3 84626349 84626454 -74973329 - PB1D10 SINE Alu -6 111 1 2 1230 397 279 29 78 chr3 84627474 84627603 -74972180 - B1F1 SINE Alu -18 130 5 2 1230 2051 138 76 22 chr3 84628076 84628456 -74971327 - ORR1B1 LTR MaLR -8 386 3 2 1230 547 164 246 0 chr3 84628466 84628576 -74971207 - B1_Mus1 SINE Alu -11 137 1 2 1230 707 236 55 0 chr3 84629222 84629387 -74970396 - B3A SINE B2 -16 182 9 2 1230 23 0 0 0 chr3 84629395 84629418 -74970365 + AT_rich Low_complexity Low_complexity 1 23 0 2 1230 235 291 163 33 chr3 84630405 84630558 -74969225 + MIR SINE MIR 89 261 -1 2 1230 334 215 174 83 chr3 84630674 84630806 -74968977 - L2a LINE L2 -5 3421 3278 2 1230 812 104 0 0 chr3 84630807 84630922 -74968861 + B1_Mus1 SINE Alu 33 147 -1 2 1230 297 135 0 0 chr3 84630924 84630976 -74968807 + (A)n Simple_repeat Simple_repeat 1 52 0 2 1230 1229 20 0 7 chr3 84631397 84631545 -74968238 + B1_Mus2 SINE Alu 1 147 0 2 1230 180 0 0 0 chr3 84631561 84631581 -74968202 + (T)n Simple_repeat Simple_repeat 1 20 0 2 1230 328 240 115 0 chr3 84631946 84632050 -74967733 + MIRb SINE MIR 83 198 -70 2 1230 22 0 0 0 chr3 84632335 84632357 -74967426 + AT_rich Low_complexity Low_complexity 1 22 0 2 1230 189 171 0 0 chr3 84633111 84633146 -74966637 + (TG)n Simple_repeat Simple_repeat 2 36 0 2 1230 255 232 157 61 chr3 84633206 84633353 -74966430 - MER2 DNA MER2_type -100 245 85 2 1230 636 268 92 15 chr3 84633376 84633638 -74966145 - B4A SINE B4 -6 286 5 2 1230 513 169 17 0 chr3 84633697 84633807 -74965976 - B1_Mur3 SINE Alu 0 149 33 2 1230 730 258 5 47 chr3 84634328 84634519 -74965264 - B3A SINE B2 -1 197 15 2 1230 853 142 225 11 chr3 84634712 84634890 -74964893 + B3 SINE B2 1 216 0 2 1230 422 325 32 0 chr3 84634939 84635062 -74964721 - RCHARR1 DNA MER1_type -845 129 3 2 1230 254 260 0 38 chr3 84635458 84635538 -74964245 - MIRb SINE MIR -11 257 181 2 1230 214 241 0 18 chr3 84635841 84635896 -74963887 + ID4_ SINE ID 4 57 -26 2 1230 26 50 0 0 chr3 84635932 84635972 -74963811 + AT_rich Low_complexity Low_complexity 1 40 0 2 1230 400 267 33 0 chr3 84635976 84636066 -74963717 - PB1D10 SINE Alu -10 107 15 2 1230 238 295 15 20 chr3 84636432 84636520 -74963263 - ID4 SINE ID -50 102 20 2 1230 547 245 79 59 chr3 84636829 84636981 -74962802 + RSINE1 SINE B4 11 165 0 2 1230 205 271 0 0 chr3 84637529 84637577 -74962206 + (TG)n Simple_repeat Simple_repeat 1 48 0 2 1230 502 282 107 7 chr3 84637579 84637729 -74962054 - RSINE1 SINE B4 0 165 1 2 1230 222 37 0 0 chr3 84637774 84637801 -74961982 + (TCTA)n Simple_repeat Simple_repeat 4 30 0 3 1230 450 287 97 44 chr3 84638293 84638541 -74961242 - MLT1E1A LTR MaLR -76 604 344 3 1230 311 294 91 36 chr3 84638656 84638875 -74960908 - L1ME1 LINE L1 -10 6169 5939 3 1230 219 36 0 0 chr3 84638932 84638960 -74960823 + (TTTTTG)n Simple_repeat Simple_repeat 3 30 0 3 1230 907 196 85 0 chr3 84638969 84639168 -74960615 - B3 SINE B2 0 216 1 3 1230 339 277 85 0 chr3 84640651 84640745 -74959038 - ID_B1 SINE B4 -10 214 113 3 1230 590 226 24 0 chr3 84640918 84641042 -74958741 - B1_Mus2 SINE Alu -20 127 1 3 1230 558 228 45 38 chr3 84641087 84641219 -74958564 - MTEa LTR MaLR -12 367 235 3 1230 707 217 129 37 chr3 84641544 84641707 -74958076 - B3A SINE B2 -15 178 1 3 1230 402 292 175 51 chr3 84641823 84641875 -74957908 - L1MC4 LINE L1 -364 7678 7631 3 1230 1162 222 89 32 chr3 84641875 84642223 -74957560 - ORR1D2 LTR MaLR 0 370 3 3 1230 402 292 175 51 chr3 84642223 84642934 -74956849 - L1MC4 LINE L1 -412 7630 6820 3 1230 242 0 0 57 chr3 84643278 84643313 -74956470 + (TTTA)n Simple_repeat Simple_repeat 4 36 0 3 1230 336 102 0 0 chr3 84643413 84643462 -74956321 + (TCTG)n Simple_repeat Simple_repeat 2 50 0 3 1230 378 324 300 9 chr3 84643528 84643753 -74956030 - B4A SINE B4 0 292 2 3 1230 1299 268 93 124 chr3 84644290 84645271 -74954512 - Charlie5 DNA MER1_type -585 2039 1090 3 1230 666 252 31 6 chr3 84645290 84645450 -74954333 - ID_B1 SINE B4 -57 167 4 3 1230 3074 40 0 0 chr3 84645595 84645965 -74953818 - L1Md_T LINE L1 0 6582 6213 3 1230 349 275 68 153 chr3 84646291 84646467 -74953316 + RSINE1 SINE B4 5 165 0 3 1230 315 0 0 0 chr3 84646714 84646749 -74953034 + (TTTA)n Simple_repeat Simple_repeat 4 38 0 3 1230 413 269 157 25 chr3 84646876 84647118 -74952665 - RLTR12B LTR ERVK -250 278 5 3 1230 374 323 49 25 chr3 84647508 84647670 -74952113 - MER103 DNA DNA 0 166 1 3 1230 487 298 99 0 chr3 84648048 84648169 -74951614 - RSINE1 SINE B4 -30 135 3 3 1230 289 274 0 0 chr3 84648203 84648265 -74951518 - B1F1 SINE Alu -48 101 40 3 1230 263 245 0 19 chr3 84650146 84650200 -74949583 - ID4_ SINE ID -11 72 20 3 1230 376 229 120 78 chr3 84652524 84652666 -74947117 + MTEa LTR MaLR 5 152 -227 3 1230 247 274 179 0 chr3 84652699 84652783 -74947000 + PB1D10 SINE Alu 11 109 -8 3 1230 289 265 29 0 chr3 84652788 84652856 -74946927 + ID4 SINE ID 1 70 -13 3 1230 235 290 10 70 chr3 84653413 84653513 -74946270 - RLTR25B LTR ERVK -493 535 442 3 1230 686 182 25 8 chr3 84653426 84653548 -74946235 - B1F2 SINE Alu -21 128 5 3 1230 522 46 0 0 chr3 84653942 84654007 -74945776 + (TA)n Simple_repeat Simple_repeat 1 65 0 3 1230 186 43 0 0 chr3 84654007 84654029 -74945754 + (CA)n Simple_repeat Simple_repeat 2 24 0 3 1230 915 67 164 79 chr3 84654573 84654750 -74945033 + B2_Mm2 SINE B2 1 192 -3 3 1230 188 146 0 47 chr3 84654937 84654980 -74944803 + (TATG)n Simple_repeat Simple_repeat 2 42 0 3 1230 588 299 112 21 chr3 84655812 84656188 -74943595 + L1ME2 LINE L1 5581 5990 -174 3 1230 399 250 87 0 chr3 84656582 84656686 -74943097 - PB1D10 SINE Alu 0 117 5 3 1230 346 299 109 51 chr3 84656800 84657168 -74942615 + ORR1E LTR MaLR 2 379 0 3 1230 255 189 0 0 chr3 84657293 84657346 -74942437 + (TATG)n Simple_repeat Simple_repeat 2 54 0 3 1230 258 322 137 64 chr3 84657356 84657575 -74942208 - ORR1E LTR MaLR -65 294 60 3 1230 776 217 22 28 chr3 84657861 84658041 -74941742 + B3A SINE B2 3 181 -17 3 1230 517 293 53 13 chr3 84658510 84658738 -74941045 - Lx7 LINE L1 -501 7195 6959 3 1230 494 282 105 28 chr3 84658854 84659139 -74940644 - L1MB4 LINE L1 -40 6140 5834 3 1230 21 0 0 0 chr3 84659237 84659258 -74940525 + AT_rich Low_complexity Low_complexity 1 21 0 3 1230 514 321 46 0 chr3 84659348 84659479 -74940304 + RSINE1 SINE B4 3 139 -26 3 1230 22 0 0 0 chr3 84659494 84659516 -74940267 + AT_rich Low_complexity Low_complexity 1 22 0 3 1230 559 240 15 90 chr3 84659747 84659948 -74939835 + B3A SINE B2 2 187 -11 3 1230 21 0 0 0 chr3 84660263 84660284 -74939499 + AT_rich Low_complexity Low_complexity 1 21 0 3 1230 592 272 26 39 chr3 84661257 84661410 -74938373 - RSINE1 SINE B4 -12 153 3 3 1230 306 87 0 0 chr3 84661434 84661480 -74938303 + (T)n Simple_repeat Simple_repeat 1 46 0 3 1230 2020 198 39 19 chr3 84661654 84662066 -74937717 - MTC LTR MaLR 0 421 2 3 1230 692 236 54 38 chr3 84662295 84662480 -74937303 + B3A SINE B2 1 188 -10 3 1230 374 239 64 62 chr3 84662557 84662803 -74936980 - L1MA6 LINE L1 0 6291 6062 3 1230 801 68 27 20 chr3 84663135 84663284 -74936499 + (TCCCC)n Simple_repeat Simple_repeat 5 154 0 3 1230 544 329 13 19 chr3 84663757 84663912 -74935871 + RSINE1 SINE B4 10 163 -2 3 1230 231 371 33 71 chr3 84663771 84663954 -74935829 + B2_Mm2 SINE B2 20 195 0 3 1230 422 302 78 26 chr3 84664382 84664535 -74935248 - RSINE1 SINE B4 -2 163 3 3 1230 21 0 0 0 chr3 84664620 84664641 -74935142 + AT_rich Low_complexity Low_complexity 1 21 0 3 1230 225 316 35 0 chr3 84664675 84664732 -74935051 + ID4_ SINE ID 24 82 -1 3 1230 510 266 37 75 chr3 84664783 84664970 -74934813 + B4A SINE B4 71 250 -42 3 1230 23 0 0 0 chr3 84665271 84665294 -74934489 + AT_rich Low_complexity Low_complexity 1 23 0 3 1230 259 299 177 29 chr3 84665345 84665689 -74934094 - L1M5 LINE L1 -360 5804 5410 3 1230 543 240 44 55 chr3 84665800 84665981 -74933802 - B3A SINE B2 -16 182 4 3 1230 1567 47 5 0 chr3 84666007 84666198 -74933585 - B2_Mm1t SINE B2 0 193 2 3 1230 356 284 120 7 chr3 84666589 84666731 -74933052 - RSINE1 SINE B4 -5 160 3 3 1230 1136 56 14 0 chr3 84666746 84666890 -74932893 + B1_Mm SINE Alu 2 147 0 3 1230 189 26 51 26 chr3 84666893 84666932 -74932851 + (CAAAA)n Simple_repeat Simple_repeat 1 40 0 3 1230 271 202 253 0 chr3 84667113 84667192 -74932591 - ID_B1 SINE B4 -3 221 123 3 1230 1260 20 0 7 chr3 84667536 84667683 -74932100 + B1_Mus2 SINE Alu 1 146 -1 3 1230 185 0 40 0 chr3 84667721 84667746 -74932037 + (TA)n Simple_repeat Simple_repeat 2 27 0 3 1230 795 284 31 28 chr3 84668518 84668808 -74930975 - B4A SINE B4 0 292 2 3 1230 529 266 99 47 chr3 84668903 84669285 -74930498 - L1MA4 LINE L1 -383 5917 5516 3 1230 565 231 183 7 chr3 84669890 84670191 -74929592 - L1MB7 LINE L1 -185 5999 5646 3 1230 254 313 54 11 chr3 84670348 84670532 -74929251 - L1MB7 LINE L1 -764 5382 5191 3 1230 785 97 40 8 chr3 84670574 84670699 -74929084 - B1_Mus1 SINE Alu -18 130 2 3 1230 301 319 70 9 chr3 84672334 84672448 -74927335 + L1MEf LINE L1 1482 1602 -4598 3 1231 305 312 124 60 chr3 84673164 84673365 -74926418 + B3 SINE B2 1 214 -2 3 1231 244 263 48 95 chr3 84673350 84673476 -74926307 + MLT1-int LTR MaLR 187 306 -1065 3 1231 689 259 69 15 chr3 84673483 84673687 -74926096 - B4A SINE B4 -77 215 1 3 1231 253 224 194 0 chr3 84673732 84673799 -74925984 - BC1_Mm scRNA scRNA -71 81 2 3 1231 342 0 0 0 chr3 84674682 84674720 -74925063 + (TG)n Simple_repeat Simple_repeat 2 39 0 3 1231 21 0 0 0 chr3 84674824 84674845 -74924938 + AT_rich Low_complexity Low_complexity 1 21 0 3 1231 1255 27 7 0 chr3 84675191 84675337 -74924446 - B1_Mm SINE Alu 0 147 1 3 1231 196 139 42 104 chr3 84675355 84675403 -74924380 + MIRm SINE MIR 231 275 -1 3 1231 611 189 146 63 chr3 84675758 84675916 -74923867 - B3 SINE B2 -15 201 31 3 1231 360 0 0 0 chr3 84675933 84675973 -74923810 + (CTAA)n Simple_repeat Simple_repeat 2 41 0 3 1231 198 0 0 0 chr3 84675973 84675995 -74923788 + (CA)n Simple_repeat Simple_repeat 2 23 0 3 1231 479 297 92 55 chr3 84675995 84676266 -74923517 - Charlie1b DNA MER1_type -209 314 34 3 1231 216 163 0 0 chr3 84676491 84676534 -74923249 + (TGGA)n Simple_repeat Simple_repeat 2 44 0 3 1231 266 210 31 31 chr3 84676543 84676607 -74923176 - ID4 SINE ID -9 74 11 3 1231 245 268 23 58 chr3 84676695 84676711 -74923072 + BC1_Mm scRNA scRNA 2 17 -135 3 1231 1479 210 47 14 chr3 84676711 84677073 -74922710 + ORR1D1 LTR MaLR 1 374 0 3 1231 314 240 53 13 chr3 84677073 84677132 -74922651 + ID SINE ID 18 80 -144 3 1231 245 268 23 58 chr3 84677132 84677143 -74922640 + BC1_Mm scRNA scRNA 18 84 -68 3 1231 22 35 0 0 chr3 84677156 84677185 -74922598 + AT_rich Low_complexity Low_complexity 1 29 0 3 1231 1160 49 7 0 chr3 84677518 84677662 -74922121 - B1_Mus2 SINE Alu 0 147 3 3 1231 315 0 0 0 chr3 84677887 84677922 -74921861 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 3 1231 402 21 0 0 chr3 84678460 84678507 -74921276 + (CA)n Simple_repeat Simple_repeat 2 48 0 3 1231 214 325 84 0 chr3 84682544 84682647 -74917136 - MIRb SINE MIR -92 170 57 3 1231 1758 202 146 6 chr3 84683080 84683444 -74916339 - MTD LTR MaLR -4 415 1 3 1231 241 288 68 0 chr3 84683446 84683519 -74916264 + Tigger9a DNA Tigger 143 220 -512 3 1231 300 323 29 68 chr3 84683521 84683624 -74916159 + RSINE1 SINE B4 28 126 -39 3 1231 564 326 187 21 chr3 84683751 84683816 -74915967 - B4A SINE B4 -6 286 217 3 1231 725 193 0 35 chr3 84683816 84683961 -74915822 - B1_Mus1 SINE Alu -8 140 1 3 1231 564 326 187 21 chr3 84683961 84684130 -74915653 - B4A SINE B4 -76 216 13 3 1231 1236 105 25 40 chr3 84684463 84684614 -74915169 + B2_Mm2 SINE B2 1 152 -43 4 1231 225 0 0 0 chr3 84684614 84684639 -74915144 + (TG)n Simple_repeat Simple_repeat 2 26 0 4 1231 1236 105 25 40 chr3 84684639 84684685 -74915098 + B2_Mm2 SINE B2 153 195 0 4 1231 275 141 38 13 chr3 84685395 84685474 -74914309 + (TA)n Simple_repeat Simple_repeat 2 82 0 4 1231 497 185 86 29 chr3 84685519 84685658 -74914125 - B1_Mur2 SINE Alu 0 149 3 4 1231 458 274 149 25 chr3 84687374 84687535 -74912248 + B3A SINE B2 2 182 -16 4 1231 22 35 0 0 chr3 84687539 84687568 -74912215 + AT_rich Low_complexity Low_complexity 1 29 0 4 1231 502 248 162 36 chr3 84687671 84687918 -74911865 - B4 SINE B4 -13 279 2 4 1231 388 166 58 70 chr3 84688047 84688157 -74911626 - MTE2b LTR MaLR -14 365 267 4 1231 516 274 21 77 chr3 84688185 84688379 -74911404 - MTE2b LTR MaLR -186 193 11 4 1231 249 251 283 88 chr3 84688451 84688691 -74911092 - B4 SINE B4 -4 288 2 4 1231 3259 46 5 0 chr3 84690043 84690437 -74909346 - MTA_Mm LTR MaLR 0 396 1 4 1231 288 350 42 42 chr3 84691124 84691267 -74908516 - MIR SINE MIR -27 235 93 4 1231 774 257 245 7 chr3 84691884 84691985 -74907798 - ORR1D2 LTR MaLR 0 370 230 4 1231 216 0 0 0 chr3 84691985 84692009 -74907774 + (CAG)n Simple_repeat Simple_repeat 2 25 0 4 1231 774 257 245 7 chr3 84692009 84692205 -74907578 - ORR1D2 LTR MaLR -141 229 3 4 1231 1416 85 60 0 chr3 84692302 84692501 -74907282 - ORR1A1 LTR MaLR 0 346 136 4 1231 447 250 64 136 chr3 84692487 84692535 -74907248 - RLTR25A LTR ERVK -426 677 539 4 1231 703 183 17 111 chr3 84692535 84692707 -74907076 - MT2B LTR ERVL -314 287 132 4 1231 3170 132 40 11 chr3 84692673 84693217 -74906566 - ORR1A1-int LTR MaLR -1403 560 1 4 1231 447 250 64 136 chr3 84692707 84692737 -74907046 - RLTR25A LTR ERVK -426 538 446 4 1231 2168 123 12 3 chr3 84693221 84693556 -74906227 - ORR1A1 LTR MaLR -8 338 1 4 1231 5098 159 142 58 chr3 84694487 84695477 -74904306 - MTC-int LTR MaLR 0 1258 158 4 1231 1421 73 15 20 chr3 84695477 84695672 -74904111 - B2_Mm2 SINE B2 0 195 2 4 1231 5098 159 142 58 chr3 84695672 84695822 -74903961 - MTC-int LTR MaLR -1101 157 22 4 1231 2515 118 117 7 chr3 84695825 84696253 -74903530 - MT2C_Mm LTR ERVL 0 475 1 4 1231 262 153 25 89 chr3 84696290 84696369 -74903414 - ORR1A1-int LTR MaLR -1323 640 567 4 1231 10675 84 21 0 chr3 84696489 84697972 -74901811 - MERVL-int LTR ERVL -129 5356 3843 4 1231 2227 157 53 0 chr3 84697993 84698368 -74901415 - MTC LTR MaLR -8 413 19 4 1231 826 203 57 27 chr3 84699312 84699494 -74900289 - B3A SINE B2 -8 187 2 4 1231 21 0 0 0 chr3 84699577 84699598 -74900185 + AT_rich Low_complexity Low_complexity 1 21 0 4 1231 298 217 99 28 chr3 84699777 84699848 -74899935 - B4 SINE B4 -87 205 130 4 1231 880 224 154 12 chr3 84700077 84700330 -74899453 - ORR1D1 LTR MaLR -85 289 1 4 1231 503 294 115 24 chr3 84700562 84700771 -74899012 - B4 SINE B4 -63 229 2 4 1231 371 366 23 15 chr3 84701233 84701366 -74898417 + RSINE1 SINE B4 30 163 -2 4 1231 856 288 154 45 chr3 84701390 84701987 -74897796 - Charlie6 DNA MER1_type -55 3445 2784 4 1231 587 269 42 74 chr3 84702575 84702792 -74896991 - MTEb LTR MaLR -169 210 1 4 1231 1572 156 22 187 chr3 84702832 84703043 -74896740 - ORR1C1 LTR MaLR -2 376 180 4 1231 249 33 0 0 chr3 84703043 84703073 -74896710 + (CA)n Simple_repeat Simple_repeat 2 31 0 4 1231 1572 156 22 187 chr3 84703073 84703311 -74896472 - ORR1C1 LTR MaLR -199 179 1 4 1231 300 256 200 0 chr3 84703509 84703599 -74896184 - PB1D10 SINE Alu 0 117 10 4 1231 29 28 0 0 chr3 84703640 84703676 -74896107 + AT_rich Low_complexity Low_complexity 1 36 0 4 1231 902 273 93 8 chr3 84703946 84704204 -74895579 - B4A SINE B4 0 292 13 4 1231 1112 296 60 36 chr3 84704214 84704599 -74895184 - MER82 DNA MER2_type -80 573 180 4 1231 225 222 110 11 chr3 84704796 84704887 -74894896 + MER112 DNA MER1_type 153 252 -9 4 1231 929 150 7 7 chr3 84704940 84705081 -74894702 - B1_Mur4 SINE Alu -9 141 1 4 1231 212 211 77 0 chr3 84705279 84705331 -74894452 - L4 LINE RTE -212 1817 1762 4 1231 3063 59 7 29 chr3 84705923 84706341 -74893442 + L1_Mus1 LINE L1 6159 6567 0 4 1231 1041 170 111 5 chr3 84706547 84706736 -74893047 - B3 SINE B2 -7 209 1 4 1231 261 218 0 0 chr3 84706850 84706905 -74892878 - L1M5 LINE L1 -464 5660 5606 4 1231 22 80 0 0 chr3 84707260 84707310 -74892473 + AT_rich Low_complexity Low_complexity 1 50 0 4 1231 279 79 0 0 chr3 84707813 84707851 -74891932 + (GGA)n Simple_repeat Simple_repeat 3 40 0 4 1231 245 216 0 38 chr3 84708917 84708970 -74890813 + PB1D10 SINE Alu 27 77 -40 4 1231 267 343 9 29 chr3 84709238 84709343 -74890440 + B1F SINE Alu 47 149 0 4 1231 1804 206 100 32 chr3 84710042 84710604 -74889179 - Lx7 LINE L1 0 7696 7097 4 1231 270 351 128 0 chr3 84711813 84711961 -74887822 + MIRb SINE MIR 63 229 -39 4 1231 397 171 134 0 chr3 84712558 84712640 -74887143 + PB1D9 SINE Alu 28 120 0 4 1231 418 317 39 0 chr3 84713220 84713400 -74886383 - B3A SINE B2 -8 190 4 4 1231 1223 231 116 29 chr3 84713473 84713817 -74885966 - ORR1D1 LTR MaLR 0 374 1 4 1231 1218 213 226 62 chr3 84714085 84714581 -74885202 + RMER4B LTR ERVK 1 577 -8 4 1231 242 224 0 0 chr3 84714710 84714768 -74885015 + T-rich Low_complexity Low_complexity 1 58 0 4 1231 340 306 16 32 chr3 84714922 84715047 -74884736 + PB1 SINE Alu 1 123 -4 4 1231 1407 266 120 15 chr3 84715734 84716268 -74883515 - L1MC1 LINE L1 -30 6303 5714 4 1231 612 70 43 96 chr3 84716512 84716814 -74882969 + CT-rich Low_complexity Low_complexity 1 285 0 4 1231 249 280 0 0 chr3 84717374 84717449 -74882334 + G-rich Low_complexity Low_complexity 1 75 0 4 1231 390 276 43 24 chr3 84717490 84717698 -74882085 - L1MC1 LINE L1 -842 5304 5093 4 1231 746 291 86 8 chr3 84717734 84718128 -74881655 - L1MC1 LINE L1 -1139 5007 4583 4 1231 996 218 59 5 chr3 84719819 84720022 -74879761 - B3 SINE B2 -1 215 2 4 1231 350 42 0 41 chr3 84720237 84720286 -74879497 - ORR1A3 LTR MaLR -8 318 272 4 1231 423 0 0 0 chr3 84720286 84720333 -74879450 + (TTA)n Simple_repeat Simple_repeat 2 48 0 4 1231 1284 94 6 16 chr3 84720333 84720516 -74879267 - B2_Mm1t SINE B2 -12 181 1 4 1231 238 294 106 35 chr3 84720543 84720656 -74879127 + MER5A DNA MER1_type 1 121 -68 4 1231 217 0 61 0 chr3 84721432 84721465 -74878318 + (CGTG)n Simple_repeat Simple_repeat 4 38 0 4 1231 21 0 0 0 chr3 84722172 84722193 -74877590 + AT_rich Low_complexity Low_complexity 1 21 0 4 1231 239 379 15 75 chr3 84722220 84722354 -74877429 - MLT1G1 LTR MaLR -438 141 16 4 1231 442 274 144 52 chr3 84722413 84722663 -74877120 - B4A SINE B4 -19 273 1 4 1231 29 47 0 0 chr3 84722902 84722945 -74876838 + AT_rich Low_complexity Low_complexity 1 43 0 4 1231 1167 55 0 0 chr3 84723785 84723931 -74875852 + B1_Mus1 SINE Alu 2 147 -1 4 1231 228 67 0 0 chr3 84724040 84724070 -74875713 + (TTTA)n Simple_repeat Simple_repeat 4 33 0 4 1231 565 246 22 96 chr3 84724090 84724225 -74875558 - RSINE1 SINE B4 -38 127 3 4 1231 680 210 57 85 chr3 84724517 84724694 -74875089 - URR1B DNA MER1_type 0 225 54 4 1231 604 211 0 0 chr3 84725003 84725112 -74874671 - B1_Mur2 SINE Alu -7 142 34 4 1231 26 0 0 0 chr3 84726778 84726804 -74872979 + AT_rich Low_complexity Low_complexity 1 26 0 4 1231 543 300 94 80 chr3 84727268 84727554 -74872229 - B4A SINE B4 -2 290 1 4 1231 777 272 150 49 chr3 84727608 84728102 -74871681 - L1MB3 LINE L1 -10 6173 5630 4 1231 487 243 56 0 chr3 84728390 84728497 -74871286 + ID_B1 SINE B4 81 193 -31 4 1231 221 320 23 69 chr3 84731917 84732048 -74867735 + B2_Mm2 SINE B2 1 125 -70 4 1231 414 0 0 0 chr3 84732088 84732134 -74867649 + (CA)n Simple_repeat Simple_repeat 2 47 0 4 1231 351 316 25 42 chr3 84732701 84732820 -74866963 - PB1D10 SINE Alu 0 117 1 4 1231 28 0 0 0 chr3 84733967 84733995 -74865788 + AT_rich Low_complexity Low_complexity 1 28 0 4 1231 7684 91 17 15 chr3 84736128 84737295 -74862488 + Lx3A LINE L1 5781 6950 -31 4 1231 188 0 74 0 chr3 84737298 84737325 -74862458 + (GGGAGA)n Simple_repeat Simple_repeat 1 29 0 4 1231 193 316 39 69 chr3 84737695 84737797 -74861986 - MIR SINE MIR -70 192 94 4 1231 298 272 61 12 chr3 84739153 84739235 -74860548 + PB1D10 SINE Alu 32 117 0 4 1231 546 314 35 40 chr3 84739310 84739356 -74860427 - B3 SINE B2 -14 202 163 4 1231 459 0 0 0 chr3 84739356 84739407 -74860376 + (TG)n Simple_repeat Simple_repeat 2 52 0 4 1231 599 290 46 1 chr3 84739407 84739562 -74860221 - B3A SINE B2 -54 162 2 4 1231 180 158 105 0 chr3 84741107 84741145 -74858638 + MIR SINE MIR 138 179 -83 4 1231 253 293 9 99 chr3 84742805 84742921 -74856862 + B4A SINE B4 80 185 -107 4 1231 216 158 0 0 chr3 84743212 84743269 -74856514 + T-rich Low_complexity Low_complexity 1 57 0 4 1231 702 123 0 0 chr3 84743269 84743375 -74856408 - B2_Mm2 SINE B2 -88 107 2 4 1231 216 0 0 0 chr3 84743894 84743918 -74855865 + (TA)n Simple_repeat Simple_repeat 1 24 0 4 1231 375 23 0 0 chr3 84743918 84743961 -74855822 + (GA)n Simple_repeat Simple_repeat 2 45 0 4 1231 337 20 40 0 chr3 84743978 84744028 -74855755 + (TA)n Simple_repeat Simple_repeat 2 53 0 4 1231 194 191 20 41 chr3 84744137 84744186 -74855597 - L2a LINE L2 -93 3333 3286 4 1231 441 216 121 65 chr3 84745366 84745490 -74854293 + B1F2 SINE Alu 3 133 -16 4 1231 750 268 6 6 chr3 84745935 84746104 -74853679 + B3A SINE B2 2 170 -28 4 1231 369 0 0 0 chr3 84746121 84746162 -74853621 + (CA)n Simple_repeat Simple_repeat 1 41 0 4 1231 313 295 93 35 chr3 84746588 84746760 -74853023 + MIR SINE MIR 61 242 -20 4 1231 288 188 0 0 chr3 84748530 84748578 -74851205 + B1_Mur1 SINE Alu 102 149 0 4 1231 30 27 0 0 chr3 84748587 84748624 -74851159 + AT_rich Low_complexity Low_complexity 1 37 0 4 1231 823 296 30 49 chr3 84749342 84749605 -74850178 - B4A SINE B4 0 292 35 5 1231 184 207 135 79 chr3 84751265 84751354 -74848429 + MIR3 SINE MIR 87 180 -28 5 1231 23 0 0 0 chr3 84752346 84752369 -74847414 + AT_rich Low_complexity Low_complexity 1 23 0 5 1231 269 26 26 0 chr3 84752500 84752538 -74847245 + (TG)n Simple_repeat Simple_repeat 2 40 0 5 1231 402 39 0 0 chr3 84756587 84756639 -74843144 + (TG)n Simple_repeat Simple_repeat 1 52 0 5 1231 26 50 0 0 chr3 84759670 84759710 -74840073 + AT_rich Low_complexity Low_complexity 1 40 0 5 1231 504 228 96 16 chr3 84760801 84760926 -74838857 - B1F SINE Alu 0 149 15 5 1231 1299 41 0 0 chr3 84761086 84761256 -74838527 + (TG)n Simple_repeat Simple_repeat 2 171 0 5 1231 589 158 0 16 chr3 84761853 84761975 -74837808 + GA-rich Low_complexity Low_complexity 2 121 0 5 1231 459 289 0 0 chr3 84761975 84762072 -74837711 + PB1D10 SINE Alu 2 98 -19 5 1231 23 0 0 0 chr3 84762401 84762424 -74837359 + AT_rich Low_complexity Low_complexity 1 23 0 5 1231 323 260 172 23 chr3 84762636 84762876 -74836907 + L1MB8 LINE L1 5804 6078 -96 5 1231 1005 131 128 24 chr3 84764738 84764949 -74834834 - Lx4B LINE L1 -3 7055 6823 5 1231 1130 114 65 11 chr3 84764955 84765141 -74834642 + Lx4B LINE L1 6625 6820 -238 5 1231 2222 108 97 0 chr3 84765320 84765662 -74834121 - ORR1B1 LTR MaLR 0 394 20 5 1231 2113 156 51 25 chr3 84765676 84766071 -74833712 + MTB_Mm LTR MaLR 3 407 0 5 1231 201 39 0 0 chr3 84766080 84766106 -74833677 + (TTG)n Simple_repeat Simple_repeat 2 27 0 5 1231 252 0 0 0 chr3 84767177 84767205 -74832578 + (GA)n Simple_repeat Simple_repeat 1 28 0 5 1231 656 193 9 0 chr3 84767209 84767323 -74832460 + B1_Mur3 SINE Alu 1 115 -34 5 1231 277 242 0 46 chr3 84770520 84770585 -74829198 - B4A SINE B4 -78 214 153 5 1231 265 300 89 0 chr3 84770604 84770694 -74829089 - B4A SINE B4 -194 98 1 5 1231 243 297 31 0 chr3 84771707 84771771 -74828012 - L2b LINE L2 -12 3363 3298 5 1231 447 239 8 68 chr3 84772193 84772310 -74827473 - PB1D9 SINE Alu -10 110 1 5 1231 250 245 56 19 chr3 84772368 84772416 -74827367 + B1_Mur2 SINE Alu 78 127 -22 5 1231 391 208 83 0 chr3 84772416 84772519 -74827264 + B1F SINE Alu 1 108 -41 5 1231 363 176 33 11 chr3 84772578 84772670 -74827113 - L1MB3 LINE L1 -227 5956 5863 5 1231 622 268 7 0 chr3 84773433 84773571 -74826212 + B1F SINE Alu 4 142 -7 5 1231 243 216 20 0 chr3 84773959 84774010 -74825773 + CT-rich Low_complexity Low_complexity 2 53 0 5 1231 368 302 129 105 chr3 84774392 84774640 -74825143 - B4A SINE B4 0 292 39 5 1231 1071 208 19 0 chr3 84775825 84776032 -74823751 - B3 SINE B2 -5 211 1 5 1231 207 0 0 0 chr3 84780766 84780789 -74818994 + (TTTG)n Simple_repeat Simple_repeat 1 23 0 5 1231 357 167 0 0 chr3 84781528 84781606 -74818177 + A-rich Low_complexity Low_complexity 1 78 0 5 1231 252 200 0 0 chr3 84781997 84782052 -74817731 + T-rich Low_complexity Low_complexity 1 55 0 5 1231 25 0 0 0 chr3 84782308 84782333 -74817450 + AT_rich Low_complexity Low_complexity 1 25 0 5 1231 2193 103 22 9 chr3 84783828 84784151 -74815632 - ORR1A2 LTR MaLR 0 327 1 5 1231 441 302 137 0 chr3 84784686 84784825 -74814958 + RSINE1 SINE B4 1 158 -7 5 1231 424 164 96 0 chr3 84785101 84785174 -74814609 + ID4 SINE ID 2 81 -2 5 1231 565 241 17 0 chr3 84785112 84785228 -74814555 + ID_B1 SINE B4 21 138 -86 5 1231 207 0 0 0 chr3 84785278 84785301 -74814482 + (A)n Simple_repeat Simple_repeat 1 23 0 5 1231 270 218 24 60 chr3 84786497 84786580 -74813203 + PB1D10 SINE Alu 1 80 -37 5 1231 283 231 87 75 chr3 84786580 84786633 -74813150 + ID_B1 SINE B4 83 214 -78 5 1231 333 282 171 0 chr3 84787683 84787853 -74811930 - Arthur1C DNA Tip100 -86 277 79 5 1231 187 304 54 0 chr3 84787970 84788026 -74811757 + MIRb SINE MIR 180 238 -30 5 1231 1824 163 69 57 chr3 84788049 84788486 -74811297 - RMER10A LTR ERVL 0 442 1 5 1231 579 319 0 0 chr3 84788643 84788781 -74811002 - B1_Mur2 SINE Alu -5 144 7 5 1231 333 0 0 0 chr3 84788829 84788866 -74810917 + (TG)n Simple_repeat Simple_repeat 1 37 0 5 1231 690 233 8 0 chr3 84789124 84789253 -74810530 + RSINE1 SINE B4 3 132 -33 5 1231 21 36 0 0 chr3 84789273 84789301 -74810482 + AT_rich Low_complexity Low_complexity 1 28 0 5 1231 669 208 104 77 chr3 84790086 84790268 -74809515 + B3A SINE B2 1 187 -8 5 1231 230 311 16 0 chr3 84790573 84790634 -74809149 + ID SINE ID 1 62 -162 5 1231 3442 25 5 8 chr3 84791350 84791747 -74808036 - MTA_Mm LTR MaLR 0 396 1 5 1231 641 96 135 0 chr3 84791781 84791885 -74807898 + ORR1C1 LTR MaLR 259 376 -2 5 1231 205 281 0 17 chr3 84793679 84793737 -74806046 + CT-rich Low_complexity Low_complexity 4 60 0 5 1231 243 266 156 21 chr3 84793740 84793836 -74805947 - PB1D10 SINE Alu -6 111 3 5 1231 738 241 19 68 chr3 84793871 84794076 -74805707 + B3A SINE B2 1 195 -3 5 1231 234 309 0 0 chr3 84794995 84795050 -74804733 + (TG)n Simple_repeat Simple_repeat 2 56 0 5 1231 8162 196 32 28 chr3 84795327 84797321 -74802462 - Lx6 LINE L1 -169 7291 5268 5 1231 895 251 65 107 chr3 84797396 84797598 -74802185 - B4A SINE B4 -5 287 93 5 1231 726 254 59 11 chr3 84797598 84797785 -74801998 - B3A SINE B2 0 198 3 5 1231 895 251 65 107 chr3 84797785 84797872 -74801911 - B4A SINE B4 -200 92 10 5 1231 312 0 41 20 chr3 84797888 84797937 -74801846 + (TTTTG)n Simple_repeat Simple_repeat 1 50 0 5 1231 603 60 0 0 chr3 84797937 84798020 -74801763 + (GA)n Simple_repeat Simple_repeat 1 84 0 5 1231 246 261 85 45 chr3 84798045 84798173 -74801610 - MIR SINE MIR -60 202 80 5 1231 1142 43 36 0 chr3 84798365 84798505 -74801278 + B1_Mm SINE Alu 1 145 -2 5 1231 648 70 0 0 chr3 84798505 84798591 -74801192 + (GGAA)n Simple_repeat Simple_repeat 3 88 0 5 1231 421 250 52 26 chr3 84798828 84798943 -74800840 + ORR1E LTR MaLR 10 127 -232 5 1231 522 263 25 44 chr3 84798984 84799143 -74800640 + ORR1E LTR MaLR 116 271 -88 5 1231 482 297 10 68 chr3 84799182 84799358 -74800425 + B3A SINE B2 1 172 -26 5 1231 216 0 0 0 chr3 84799358 84799382 -74800401 + (CA)n Simple_repeat Simple_repeat 2 25 0 5 1231 482 297 10 68 chr3 84799382 84799411 -74800372 + B3A SINE B2 173 194 -4 5 1231 314 267 22 22 chr3 84799422 84799514 -74800269 + ORR1E LTR MaLR 288 379 0 5 1231 265 314 9 38 chr3 84799728 84799834 -74799949 + MER5A1 DNA MER1_type 6 108 -58 5 1231 495 0 0 0 chr3 84801792 84801847 -74797936 + (CAAG)n Simple_repeat Simple_repeat 1 55 0 5 1231 1294 27 0 0 chr3 84801986 84802133 -74797650 + B1_Mus2 SINE Alu 1 147 0 5 1231 5052 14 0 0 chr3 84802383 84802940 -74796843 - L1Md_T LINE L1 0 6582 6026 5 1231 3765 21 0 0 chr3 84802941 84803374 -74796409 + L1_Mm LINE L1 5101 5533 -350 5 1232 605 224 213 0 chr3 84803586 84803769 -74796014 - ID_B1 SINE B4 0 224 3 5 1232 533 303 27 76 chr3 84804411 84804636 -74795147 - Tigger9a DNA Tigger -141 591 378 5 1232 267 152 0 0 chr3 84804787 84804833 -74794950 + (TGAA)n Simple_repeat Simple_repeat 3 48 0 5 1232 232 287 167 24 chr3 84805209 84805377 -74794406 + L1MC3 LINE L1 6930 7121 -664 5 1232 1213 256 65 82 chr3 84805755 84806083 -74793700 + L1MC3 LINE L1 7189 7503 -282 5 1232 459 0 0 0 chr3 84806083 84806134 -74793649 + (CA)n Simple_repeat Simple_repeat 2 52 0 5 1232 1213 256 65 82 chr3 84806134 84806391 -74793392 + L1MC3 LINE L1 7504 7763 -22 5 1232 59 27 0 0 chr3 84806475 84806548 -74793235 + AT_rich Low_complexity Low_complexity 1 73 0 5 1232 334 200 120 0 chr3 84806980 84807055 -74792728 + MLT1A1 LTR MaLR 1 84 -324 5 1232 542 252 9 0 chr3 84807085 84807192 -74792591 + B1F2 SINE Alu 3 110 -39 5 1232 425 219 27 68 chr3 84807327 84807474 -74792309 - L1M4 LINE L1 -880 5266 5126 5 1232 751 269 80 14 chr3 84807538 84807813 -74791970 - L1M4 LINE L1 -1030 5116 4824 5 1232 373 286 115 9 chr3 84808001 84808114 -74791669 + ID_B1 SINE B4 86 210 -14 5 1232 761 274 158 11 chr3 84808137 84808422 -74791361 - MTEb LTR MaLR -52 327 1 5 1232 234 0 0 0 chr3 84808427 84808453 -74791330 + (CAAA)n Simple_repeat Simple_repeat 4 29 0 5 1232 189 0 0 0 chr3 84809736 84809757 -74790026 + (CA)n Simple_repeat Simple_repeat 2 22 0 5 1232 276 30 0 0 chr3 84809757 84809790 -74789993 + (CCA)n Simple_repeat Simple_repeat 3 35 0 5 1232 227 282 132 47 chr3 84809807 84809997 -74789786 - LTR45C LTR ERV1 -320 219 14 5 1232 227 242 69 32 chr3 84809999 84810093 -74789690 + B1F SINE Alu 9 109 -8 5 1232 312 329 68 34 chr3 84810408 84810584 -74789199 - L1M5 LINE L1 -400 5724 5543 5 1232 1231 116 141 0 chr3 84810589 84810787 -74788996 - URR1A DNA MER1_type 0 226 1 5 1232 369 0 0 0 chr3 84812046 84812087 -74787696 + (TC)n Simple_repeat Simple_repeat 2 42 0 5 1232 432 0 0 0 chr3 84812524 84812572 -74787211 + (TG)n Simple_repeat Simple_repeat 1 48 0 5 1232 651 26 0 0 chr3 84812572 84812648 -74787135 + (GA)n Simple_repeat Simple_repeat 1 77 0 5 1232 329 320 21 99 chr3 84812664 84812806 -74786977 - B1F SINE Alu -18 131 1 5 1232 724 242 6 92 chr3 84812806 84812864 -74786919 - B4 SINE B4 -209 83 41 5 1232 189 107 0 0 chr3 84813931 84813959 -74785824 + (CTG)n Simple_repeat Simple_repeat 1 28 0 5 1232 274 314 9 26 chr3 84814153 84814266 -74785517 + MIRb SINE MIR 154 260 -2 5 1232 184 245 61 0 chr3 84814567 84814616 -74785167 + L2c LINE L2 3286 3337 -50 5 1232 23 0 0 0 chr3 84815350 84815373 -74784410 + AT_rich Low_complexity Low_complexity 1 23 0 5 1232 180 341 56 22 chr3 84817248 84817338 -74782445 + L2b LINE L2 3276 3368 -7 5 1232 500 227 48 78 chr3 84817431 84817598 -74782185 - RSINE1 SINE B4 0 165 4 5 1232 786 267 117 103 chr3 84817874 84818242 -74781541 - MTE2a LTR MaLR -4 375 3 5 1232 434 18 18 0 chr3 84819072 84819127 -74780656 + (GA)n Simple_repeat Simple_repeat 1 56 0 6 1232 474 170 0 0 chr3 84819213 84819307 -74780476 + CT-rich Low_complexity Low_complexity 4 97 0 6 1232 361 305 28 19 chr3 84819310 84819417 -74780366 - PB1D10 SINE Alu -1 116 9 6 1232 587 234 20 14 chr3 84819469 84819616 -74780167 - B1_Mur1 SINE Alu 0 149 2 6 1232 190 286 20 0 chr3 84819654 84819703 -74780080 - MIRc SINE MIR -102 166 117 6 1232 700 317 208 50 chr3 84820817 84821298 -74778485 - MLT1K LTR MaLR -5 590 34 6 1232 300 188 0 55 chr3 84821312 84821385 -74778398 - RMER20A LTR ERVK -8 508 440 6 1232 4413 123 84 30 chr3 84821477 84822466 -74777317 + RLTR25B LTR ERVK 1 1102 -1 6 1232 2351 150 12 37 chr3 84822466 84822875 -74776908 - RMER20A LTR ERVK -117 399 1 6 1232 816 108 0 0 chr3 84822881 84822992 -74776791 + MurERV4_19-int LTR ERVK 794 904 -4876 6 1232 2761 158 193 9 chr3 84822992 84823558 -74776225 + RMER19A LTR ERVK 28 723 -14 6 1232 472 237 144 0 chr3 84823562 84823680 -74776103 + MTE2b LTR MaLR 18 152 -227 6 1232 289 151 151 0 chr3 84823671 84823686 -74776097 + PB1D10 SINE Alu 47 107 -10 6 1232 297 105 0 0 chr3 84823686 84823724 -74776059 + ID_B1 SINE B4 177 214 -10 6 1232 315 337 17 0 chr3 84823801 84823912 -74775871 + ID2 SINE ID 1 113 -39 6 1232 258 336 23 85 chr3 84823912 84823931 -74775852 + ID_B1 SINE B4 1 122 -102 6 1232 209 281 84 12 chr3 84823932 84824015 -74775768 + MIR SINE MIR 172 260 -2 6 1232 533 310 87 37 chr3 84824824 84825202 -74774581 + L1ME4a LINE L1 5715 6111 -13 6 1232 238 281 71 24 chr3 84829238 84829322 -74770461 - LTR78 LTR ERV1 -346 958 871 6 1232 628 292 37 95 chr3 84829806 84830184 -74769599 + MLT1A0 LTR MaLR 4 359 -6 6 1232 244 292 39 59 chr3 84830210 84830312 -74769471 + MIRb SINE MIR 121 220 -48 6 1232 315 0 0 0 chr3 84830460 84830495 -74769288 + (CA)n Simple_repeat Simple_repeat 2 36 0 6 1232 229 322 11 32 chr3 84830735 84830828 -74768955 - MLT1A1 LTR MaLR 0 408 318 6 1232 617 224 176 16 chr3 84830991 84831173 -74768610 - B3 SINE B2 0 216 6 6 1232 455 283 49 79 chr3 84831274 84831477 -74768306 - B3A SINE B2 -1 197 1 6 1232 2888 164 86 45 chr3 84832851 84833445 -74766338 - RMER20B LTR ERVK 0 627 10 6 1232 261 0 0 0 chr3 84834133 84834162 -74765621 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 6 1232 838 143 19 52 chr3 84834304 84834459 -74765324 - B1_Mur4 SINE Alu 0 150 1 6 1232 395 345 95 60 chr3 84834713 84835145 -74764638 - MLT1L LTR MaLR -163 447 1 6 1232 1191 254 61 95 chr3 84835321 84835700 -74764083 + MTE2b LTR MaLR 3 368 -11 6 1232 207 0 0 0 chr3 84836689 84836712 -74763071 + (TG)n Simple_repeat Simple_repeat 2 24 0 6 1232 459 0 0 0 chr3 84836834 84836885 -74762898 + (TG)n Simple_repeat Simple_repeat 1 51 0 6 1232 477 299 67 0 chr3 84836896 84837030 -74762753 - RSINE1 SINE B4 -11 154 12 6 1232 645 148 205 0 chr3 84837047 84837169 -74762614 - B1_Mus1 SINE Alu -1 147 1 6 1232 571 298 96 0 chr3 84837203 84837401 -74762382 - B4A SINE B4 -68 224 8 6 1232 1195 291 17 20 chr3 84838420 84838774 -74761009 + ORR1E LTR MaLR 1 353 -6 6 1232 11122 53 2 1 chr3 84839122 84841188 -74758595 - L1Md_F2 LINE L1 -6 6576 4510 6 1232 240 338 68 63 chr3 84842038 84842259 -74757524 + MIRb SINE MIR 8 229 -39 6 1232 25 0 0 0 chr3 84843806 84843831 -74755952 + AT_rich Low_complexity Low_complexity 1 25 0 6 1232 616 271 0 13 chr3 84843837 84843994 -74755789 + RSINE1 SINE B4 11 165 0 6 1232 21 0 0 0 chr3 84844040 84844061 -74755722 + AT_rich Low_complexity Low_complexity 1 21 0 6 1232 188 135 27 0 chr3 84846073 84846110 -74753673 + T-rich Low_complexity Low_complexity 3 40 0 6 1232 369 62 0 0 chr3 84847093 84847141 -74752642 + (T)n Simple_repeat Simple_repeat 1 48 0 6 1232 567 0 0 0 chr3 84848271 84848334 -74751449 + (TC)n Simple_repeat Simple_repeat 2 64 0 6 1232 270 0 0 0 chr3 84848334 84848363 -74751420 + (TG)n Simple_repeat Simple_repeat 1 30 0 6 1232 441 136 149 35 chr3 84848807 84848921 -74750862 + B1F SINE Alu 23 149 0 6 1232 585 243 83 32 chr3 84849329 84849546 -74750237 - RMER5 LTR ERV1 0 534 307 6 1232 365 335 20 20 chr3 84849550 84849754 -74750029 - L1MA9 LINE L1 -284 6028 5825 6 1232 243 125 0 0 chr3 84849754 84849794 -74749989 + (CA)n Simple_repeat Simple_repeat 1 40 0 6 1232 344 277 89 78 chr3 84849801 84850083 -74749700 - B4 SINE B4 -6 286 2 6 1232 311 311 10 111 chr3 84850083 84850119 -74749664 - L1MA9 LINE L1 -364 5825 5795 6 1232 1218 232 95 97 chr3 84850310 84850936 -74748847 - RMER13A LTR ERVK -265 643 1 6 1232 247 323 10 0 chr3 84851031 84851127 -74748656 - L1M3 LINE L1 -641 5659 5563 6 1232 872 267 166 24 chr3 84851190 84851430 -74748353 - L1M3 LINE L1 -1268 4872 4626 6 1232 288 70 0 0 chr3 84851430 84851473 -74748310 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 6 1232 872 267 166 24 chr3 84851473 84851689 -74748094 - L1M3 LINE L1 -1515 4625 4352 6 1232 737 278 58 0 chr3 84851750 84851766 -74748017 - ID_B1 SINE B4 -7 217 202 6 1232 1507 233 13 44 chr3 84851766 84852152 -74747631 - ORR1D1 LTR MaLR 0 374 1 6 1232 737 278 58 0 chr3 84852152 84852340 -74747443 - ID_B1 SINE B4 -23 201 2 6 1232 1147 281 51 52 chr3 84852816 84853349 -74746434 + RMER5 LTR ERV1 3 534 0 6 1232 2058 199 19 14 chr3 84855587 84856006 -74743777 + MTC LTR MaLR 1 421 0 6 1232 219 337 48 12 chr3 84856362 84856446 -74743337 - L2a LINE L2 -46 3380 3294 6 1232 551 263 52 118 chr3 84857910 84858110 -74741673 + L1MCa LINE L1 1979 2174 -4334 6 1232 860 233 47 5 chr3 84858110 84858300 -74741483 + B3A SINE B2 1 198 0 6 1232 551 263 52 118 chr3 84858300 84858448 -74741335 + L1MCa LINE L1 2175 2304 -4204 6 1232 4783 263 94 50 chr3 84858482 84860524 -74739259 + L1MCa LINE L1 2845 4976 -1345 6 1232 374 364 7 7 chr3 84861557 84861698 -74738085 + (CCA)n Simple_repeat Simple_repeat 3 143 0 6 1232 1050 222 112 10 chr3 84863346 84863642 -74736141 - ORR1D2 LTR MaLR 0 370 45 6 1232 672 310 36 52 chr3 84865092 84865347 -74734436 + ORR1E LTR MaLR 1 244 -115 6 1232 1874 171 75 38 chr3 84865347 84865747 -74734036 + MTD LTR MaLR 5 419 0 6 1232 672 310 36 52 chr3 84865747 84865855 -74733928 + ORR1E LTR MaLR 245 358 -1 6 1232 207 0 0 0 chr3 84866330 84866353 -74733430 + (TG)n Simple_repeat Simple_repeat 2 24 0 6 1232 360 43 0 0 chr3 84866353 84866399 -74733384 + (TGG)n Simple_repeat Simple_repeat 3 48 0 6 1232 356 254 0 8 chr3 84868617 84868736 -74731047 + GA-rich Low_complexity Low_complexity 3 120 0 6 1232 205 75 0 70 chr3 84868935 84868978 -74730805 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 6 1232 1169 244 53 72 chr3 84869198 84869573 -74730210 - MTE2b LTR MaLR -11 368 1 6 1232 240 35 0 0 chr3 84871107 84871136 -74728647 + (CA)n Simple_repeat Simple_repeat 2 30 0 6 1232 721 222 297 0 chr3 84871278 84871487 -74728296 - MTE2a LTR MaLR -26 353 83 6 1232 3356 140 46 19 chr3 84871490 84872115 -74727668 + RLTR26 LTR ERVK 1 642 0 6 1232 287 282 100 4 chr3 84872120 84872226 -74727557 - MTE2a LTR MaLR -308 111 5 6 1232 518 273 61 0 chr3 84872310 84872442 -74727341 + Lx8 LINE L1 7042 7181 -292 6 1232 455 316 38 19 chr3 84872606 84872764 -74727019 + RMER15 LTR ERVL 371 531 -44 6 1232 372 43 0 0 chr3 84872991 84873037 -74726746 + (TA)n Simple_repeat Simple_repeat 1 46 0 6 1232 296 270 40 0 chr3 84873044 84873118 -74726665 - L1M5 LINE L1 -471 5653 5577 6 1232 444 294 96 27 chr3 84874015 84874235 -74725548 + RMER15 LTR ERVL 336 570 -5 6 1232 347 156 12 94 chr3 84874786 84874871 -74724912 - MTD LTR MaLR 0 419 342 6 1232 1193 8 19 36 chr3 84874889 84875253 -74724530 + (TG)n Simple_repeat Simple_repeat 1 357 0 6 1232 1785 219 47 88 chr3 84875257 84875767 -74724016 - RLTR18B LTR ERVK -13 499 11 6 1232 377 257 245 29 chr3 84875771 84875979 -74723804 - MTD LTR MaLR -166 253 1 6 1232 349 313 64 29 chr3 84875988 84876192 -74723591 - L1M5 LINE L1 -644 5480 5270 6 1232 518 323 37 5 chr3 84876511 84876698 -74723085 + Lx8 LINE L1 6183 6375 -1098 6 1232 910 159 185 0 chr3 84876698 84876887 -74722896 + URR1B DNA MER1_type 1 224 -1 6 1232 196 262 0 0 chr3 84877806 84877848 -74721935 + MIRm SINE MIR 114 155 -121 6 1232 1942 172 199 65 chr3 84878013 84878282 -74721501 - RMER6C LTR ERVK -3 687 407 6 1232 198 0 0 0 chr3 84878282 84878304 -74721479 + (CACTG)n Simple_repeat Simple_repeat 4 25 0 6 1232 321 47 0 0 chr3 84878305 84878348 -74721435 + (CAACT)n Simple_repeat Simple_repeat 3 45 0 6 1232 1942 172 199 65 chr3 84878348 84878679 -74721104 - RMER6C LTR ERVK -284 406 4 6 1232 315 0 0 0 chr3 84878763 84878798 -74720985 + (TG)n Simple_repeat Simple_repeat 2 36 0 6 1232 390 335 17 13 chr3 84879913 84880146 -74719637 - L1MA9 LINE L1 -40 6272 6039 6 1232 584 250 43 7 chr3 84880244 84880385 -74719398 + RSINE1 SINE B4 3 148 -17 6 1232 440 18 18 0 chr3 84880399 84880456 -74719327 + (CA)n Simple_repeat Simple_repeat 2 59 0 6 1232 759 257 121 46 chr3 84880548 84880646 -74719137 - Lx9 LINE L1 -149 7495 7378 6 1232 1379 216 72 41 chr3 84880646 84881009 -74718774 + ORR1D1 LTR MaLR 1 374 0 6 1232 759 257 121 46 chr3 84881009 84881216 -74718567 - Lx9 LINE L1 -267 7377 7167 6 1232 609 272 52 147 chr3 84881307 84881528 -74718255 - L1MC5 LINE L1 -52 7909 7695 6 1232 541 248 65 13 chr3 84881528 84881683 -74718100 + RSINE1 SINE B4 3 165 0 6 1232 609 272 52 147 chr3 84881683 84882129 -74717654 - L1MC5 LINE L1 -267 7694 7305 6 1232 328 221 171 45 chr3 84882305 84882504 -74717279 - L1MC5 LINE L1 -838 7123 6900 6 1232 229 224 20 0 chr3 84882544 84882593 -74717190 - B1F1 SINE Alu -98 51 2 6 1232 395 260 43 61 chr3 84883216 84883380 -74716403 + MER58A DNA MER1_type 52 212 -12 6 1232 849 218 40 40 chr3 84883461 84883733 -74716050 - MER45B DNA Tip100 -53 987 716 6 1232 352 299 83 24 chr3 84884016 84884184 -74715599 - MER45C DNA Tip100 -687 266 89 6 1232 1132 311 20 22 chr3 84884405 84884904 -74714879 - L1MB3 LINE L1 0 6183 5686 6 1232 227 192 0 0 chr3 84886169 84886221 -74713562 + (CAT)n Simple_repeat Simple_repeat 1 52 0 6 1232 328 115 0 0 chr3 84886372 84886424 -74713359 - L1_Mm LINE L1 -1910 3973 3922 6 1232 34237 58 2 1 chr3 84886433 84892599 -74707184 - L1Md_F2 LINE L1 -16 6566 390 7 1232 533 301 55 67 chr3 84892599 84892852 -74706931 - B4A SINE B4 -42 250 1 7 1232 348 24 0 0 chr3 84893742 84893783 -74706000 + (CA)n Simple_repeat Simple_repeat 1 41 0 7 1232 441 289 36 48 chr3 84893825 84893992 -74705791 - RSINE1 SINE B4 0 165 1 7 1232 949 267 27 153 chr3 84894073 84894555 -74705228 - RLTR23 LTR ERV1 0 430 10 7 1232 635 190 7 0 chr3 84895446 84895583 -74704200 + GA-rich Low_complexity Low_complexity 4 141 0 7 1232 252 380 11 0 chr3 84895785 84895877 -74703906 - MTE-int LTR MaLR -42 1538 1446 7 1232 208 245 0 20 chr3 84895953 84896003 -74703780 + (TG)n Simple_repeat Simple_repeat 2 50 0 7 1232 230 139 0 0 chr3 84896595 84896631 -74703152 - PB1D9 SINE Alu -8 112 77 7 1232 343 239 23 0 chr3 84896774 84896862 -74702921 - PB1D10 SINE Alu -5 112 23 7 1232 243 311 32 50 chr3 84896805 84896978 -74702805 - RSINE1 SINE B4 -125 167 5 7 1232 869 299 42 40 chr3 84898103 84898437 -74701346 - MTE2a LTR MaLR 0 421 56 7 1232 528 227 75 8 chr3 84898449 84898582 -74701201 - B1F2 SINE Alu -7 142 1 7 1232 288 0 0 0 chr3 84898918 84898950 -74700833 + (TG)n Simple_repeat Simple_repeat 2 33 0 7 1232 362 184 77 10 chr3 84900095 84900199 -74699584 - MER44B DNA MER2_type -90 460 350 7 1232 341 117 17 0 chr3 84900381 84900441 -74699342 + (CA)n Simple_repeat Simple_repeat 2 62 0 7 1232 299 126 74 25 chr3 84900583 84900746 -74699037 + (TA)n Simple_repeat Simple_repeat 2 172 0 7 1232 353 364 41 28 chr3 84901070 84901347 -74698436 - MLT1H1 LTR MaLR -266 325 47 7 1232 580 262 35 0 chr3 84903585 84903726 -74696057 + RSINE1 SINE B4 3 148 -17 7 1232 2160 98 3 76 chr3 84903940 84904295 -74695488 - ORR1A4 LTR MaLR 0 329 1 7 1232 186 71 0 0 chr3 84904883 84904911 -74694872 + (TTCA)n Simple_repeat Simple_repeat 4 31 0 7 1232 289 280 69 46 chr3 84904915 84905046 -74694737 - L2b LINE L2 -15 3360 3227 7 1232 480 289 7 0 chr3 84905290 84905432 -74694351 + MLT2B1 LTR ERVL 70 212 -308 7 1232 387 0 0 0 chr3 84905642 84905685 -74694098 + (TG)n Simple_repeat Simple_repeat 1 43 0 7 1232 22 56 0 0 chr3 84906065 84906101 -74693682 + AT_rich Low_complexity Low_complexity 1 36 0 7 1232 290 270 18 0 chr3 84906271 84906382 -74693401 + C-rich Low_complexity Low_complexity 1 113 0 7 1232 250 328 132 44 chr3 84906412 84906910 -74692873 - HAL1 LINE L1 -1196 1311 770 7 1232 239 275 40 40 chr3 84908856 84908981 -74690802 - L1ME4a LINE L1 -9 6115 5991 7 1232 430 137 21 0 chr3 84909157 84909252 -74690531 + GA-rich Low_complexity Low_complexity 1 97 0 7 1232 328 240 0 0 chr3 84909252 84909327 -74690456 - RMER30 DNA MER1_type -122 80 6 7 1232 461 299 52 10 chr3 84909688 84909899 -74689884 + L1M5 LINE L1 5294 5512 -661 7 1232 576 0 0 0 chr3 84909899 84909963 -74689820 + (GA)n Simple_repeat Simple_repeat 1 64 0 7 1232 306 0 0 0 chr3 84911548 84911582 -74688201 + (TG)n Simple_repeat Simple_repeat 1 34 0 7 1232 1740 176 121 12 chr3 84911647 84912078 -74687705 + RLTR11A2 LTR ERVK 18 495 -32 7 1232 498 169 0 0 chr3 84912642 84912784 -74686999 + (CA)n Simple_repeat Simple_repeat 1 142 0 7 1232 311 337 0 0 chr3 84913350 84913448 -74686335 + ID_B1 SINE B4 2 99 -125 7 1232 260 241 6 147 chr3 84913905 84914061 -74685722 + MIR SINE MIR 119 252 -10 7 1232 285 51 0 0 chr3 84915531 84915570 -74684213 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 7 1232 23 54 0 0 chr3 84915673 84915710 -74684073 + AT_rich Low_complexity Low_complexity 1 37 0 7 1232 416 305 51 35 chr3 84916492 84916637 -74683146 - MER112 DNA MER1_type -2 259 108 7 1232 198 71 0 0 chr3 84916637 84916665 -74683118 + (CTATT)n Simple_repeat Simple_repeat 5 32 0 7 1232 416 305 51 35 chr3 84916665 84916774 -74683009 - MER112 DNA MER1_type -154 107 1 7 1232 858 122 39 41 chr3 84916825 84917022 -74682761 - URR1B DNA MER1_type 0 225 6 7 1232 186 292 10 101 chr3 84917029 84917128 -74682655 - L2a LINE L2 -28 3398 3309 7 1232 1795 151 65 6 chr3 84917365 84917704 -74682079 - ORR1B2 LTR MaLR -8 359 1 7 1232 210 322 0 0 chr3 84918229 84918288 -74681495 - MIR SINE MIR -191 71 13 7 1232 672 272 38 14 chr3 84918499 84918708 -74681075 - MER58B DNA MER1_type -1 340 127 7 1232 910 145 0 21 chr3 84918747 84918888 -74680895 - B1_Mur3 SINE Alu -10 139 2 7 1232 352 268 7 86 chr3 84919275 84919414 -74680369 - MamRep434 DNA TcMar -22 404 277 7 1232 269 276 143 0 chr3 84919419 84919524 -74680259 - MIRc SINE MIR -18 250 131 7 1232 21 36 0 0 chr3 84920804 84920832 -74678951 + AT_rich Low_complexity Low_complexity 1 28 0 7 1232 1743 187 14 27 chr3 84921193 84921562 -74678221 + MTD LTR MaLR 42 405 -14 7 1232 422 330 16 11 chr3 84922173 84922363 -74677420 - MLT2C2 LTR ERVL -262 202 12 7 1232 293 274 58 53 chr3 84922473 84922662 -74677121 - L1MC5 LINE L1 -244 7717 7528 7 1232 467 74 0 14 chr3 84922677 84922746 -74677037 + (TA)n Simple_repeat Simple_repeat 2 69 0 7 1232 995 119 6 12 chr3 84922760 84922922 -74676861 - B2_Mm2 SINE B2 -34 161 1 7 1232 696 231 22 11 chr3 84923250 84923400 -74676383 + MTEa LTR MaLR 194 344 -35 7 1232 387 0 0 0 chr3 84923400 84923443 -74676340 + (CA)n Simple_repeat Simple_repeat 2 44 0 7 1232 696 231 22 11 chr3 84923443 84923476 -74676307 + MTEa LTR MaLR 345 378 -1 7 1232 1043 144 158 5 chr3 84924024 84924220 -74675563 - MTC LTR MaLR 0 421 196 7 1232 768 48 29 0 chr3 84924242 84924346 -74675437 - L1_Mus1 LINE L1 -3 6564 6458 7 1232 1025 42 0 0 chr3 84924363 84924483 -74675300 + L1_Mus1 LINE L1 6233 6352 -215 7 1232 1257 93 42 0 chr3 84924488 84924681 -74675102 - MTC LTR MaLR -210 211 11 7 1232 190 336 27 9 chr3 84924968 84925079 -74674704 - MIRb SINE MIR -79 189 77 7 1232 192 97 0 0 chr3 84926087 84926118 -74673665 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 7 1232 351 340 89 9 chr3 84927752 84927966 -74671817 + MIR SINE MIR 31 261 -1 7 1232 292 252 84 0 chr3 84928707 84928814 -74670969 - L1ME4a LINE L1 -4 6120 6005 7 1232 447 52 0 0 chr3 84929281 84929339 -74670444 + (TG)n Simple_repeat Simple_repeat 2 59 0 7 1232 772 260 47 14 chr3 84929750 84929961 -74669822 + ID_B1 SINE B4 1 218 -6 7 1232 400 60 30 0 chr3 84930701 84930768 -74669015 - Lx5 LINE L1 0 7050 6982 7 1232 593 248 104 155 chr3 84931127 84931513 -74668270 + Lx8 LINE L1 7104 7469 -4 7 1232 410 200 0 0 chr3 84933325 84933395 -74666388 - ID4_ SINE ID -9 74 5 7 1232 234 250 14 42 chr3 84934244 84934315 -74665468 + MIR3 SINE MIR 105 173 -35 7 19 951 168 34 8 chr3 84934423 84934924 -74664859 + (TCTA)n Simple_repeat Simple_repeat 1 513 0 7 1233 3400 35 5 0 chr3 84934924 84935318 -74664465 - MTA_Mm LTR MaLR 0 396 1 7 1233 378 0 0 0 chr3 84935318 84935360 -74664423 + (TCTA)n Simple_repeat Simple_repeat 2 43 0 7 1233 545 243 168 0 chr3 84935411 84935596 -74664187 - MLT1A0 LTR MaLR 0 365 150 7 1233 377 178 120 22 chr3 84935591 84935683 -74664100 + MLT1A1 LTR MaLR 268 368 -40 7 1233 539 191 8 42 chr3 84935697 84935817 -74663966 + MER57A-int LTR ERV1 5805 5920 -267 7 1233 629 261 222 44 chr3 84935999 84936364 -74663419 - MLT1E1A LTR MaLR -244 436 7 7 1233 650 248 119 11 chr3 84936609 84936878 -74662905 + L1MC1 LINE L1 6019 6316 -17 7 1233 796 287 19 68 chr3 84939667 84939989 -74659794 - MLT1A0 LTR MaLR -7 358 53 7 1233 1743 134 98 6 chr3 84940036 84940352 -74659431 - RLTR9D LTR ERVK -58 345 1 7 1233 344 345 0 9 chr3 84943661 84943772 -74656011 + PB1D10 SINE Alu 1 110 -7 7 1233 676 280 6 13 chr3 84943802 84943940 -74655843 + RSINE1 SINE B4 8 145 -20 7 1233 312 70 0 0 chr3 84943940 84943983 -74655800 + (TG)n Simple_repeat Simple_repeat 1 43 0 7 1233 676 280 6 13 chr3 84943983 84944003 -74655780 + RSINE1 SINE B4 146 165 0 7 1233 305 304 21 42 chr3 84944003 84944030 -74655753 + B2_Mm2 SINE B2 142 188 -7 7 1233 337 282 0 0 chr3 84944046 84944117 -74655666 + ID4 SINE ID 2 72 -11 7 1233 333 0 0 0 chr3 84944129 84944166 -74655617 + (CA)n Simple_repeat Simple_repeat 2 38 0 7 1233 960 294 30 35 chr3 84944741 84945080 -74654703 - MLT1B LTR MaLR -28 362 26 7 1233 324 0 0 0 chr3 84945163 84945199 -74654584 + (TC)n Simple_repeat Simple_repeat 1 36 0 7 1233 266 73 24 0 chr3 84945319 84945360 -74654423 + (TC)n Simple_repeat Simple_repeat 1 42 0 7 1233 249 33 0 0 chr3 84945360 84945390 -74654393 + (TG)n Simple_repeat Simple_repeat 1 30 0 7 1233 216 0 0 0 chr3 84945390 84945413 -74654370 + (GA)n Simple_repeat Simple_repeat 1 24 0 7 1233 315 308 234 12 chr3 84945935 84946106 -74653677 + MER3 DNA MER1_type 1 209 0 7 1233 562 297 31 25 chr3 84947915 84948074 -74651709 - RSINE1 SINE B4 -4 161 2 7 1233 712 369 21 31 chr3 84948505 84948793 -74650990 + B4 SINE B4 7 291 -1 7 1233 255 31 0 0 chr3 84950413 84950445 -74649338 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 7 1233 202 351 43 43 chr3 84951518 84951634 -74648149 - MER5A DNA MER1_type -68 121 6 7 1233 1206 214 115 49 chr3 84952703 84953052 -74646731 - MLT1B LTR MaLR -17 373 2 7 1233 233 204 17 85 chr3 84954452 84954511 -74645272 - LTR50 LTR ERVL -577 218 164 7 1233 435 261 31 20 chr3 84954860 84955044 -74644739 + MIRb SINE MIR 24 268 0 7 1233 1710 190 122 24 chr3 84955228 84955606 -74644177 + MTD LTR MaLR 5 419 0 7 1233 525 265 7 64 chr3 84956698 84956839 -74642944 - RSINE1 SINE B4 0 165 33 8 1233 3230 53 2 8 chr3 84957968 84958366 -74641417 + MTA_Mm LTR MaLR 1 396 0 8 1233 764 167 74 45 chr3 84959082 84959258 -74640525 + ORR1A4 LTR MaLR 28 208 -186 8 1233 2184 129 41 124 chr3 84959255 84959723 -74640060 + ORR1A4-int LTR MaLR 1081 1509 0 8 1233 2141 108 15 60 chr3 84959723 84960059 -74639724 + ORR1A4 LTR MaLR 1 321 -8 8 1233 349 244 0 35 chr3 84960118 84960203 -74639580 + ID4 SINE ID 2 83 0 8 1233 234 0 0 0 chr3 84960203 84960229 -74639554 + (CAAAAA)n Simple_repeat Simple_repeat 4 29 0 8 1233 469 366 95 24 chr3 84960317 84960873 -74638910 - L2a LINE L2 -11 3415 2812 8 1233 351 0 0 0 chr3 84960920 84960959 -74638824 + (TC)n Simple_repeat Simple_repeat 2 40 0 8 1233 470 284 44 25 chr3 84960959 84961118 -74638665 - RSINE1 SINE B4 -3 162 1 8 1233 432 0 0 0 chr3 84962025 84962073 -74637710 + (TG)n Simple_repeat Simple_repeat 2 49 0 8 1233 252 0 0 0 chr3 84963031 84963059 -74636724 + (ATTG)n Simple_repeat Simple_repeat 1 28 0 8 1233 360 0 0 0 chr3 84963968 84964008 -74635775 + (CA)n Simple_repeat Simple_repeat 1 40 0 8 1233 21 0 0 0 chr3 84965640 84965661 -74634122 + AT_rich Low_complexity Low_complexity 1 21 0 8 1233 300 154 0 0 chr3 84965815 84965867 -74633916 + CT-rich Low_complexity Low_complexity 3 54 0 8 1233 240 280 0 0 chr3 84966167 84966242 -74633541 + A-rich Low_complexity Low_complexity 1 75 0 8 1233 239 191 0 0 chr3 84966660 84966702 -74633081 + URR1B DNA MER1_type 1 42 -183 8 1233 250 198 166 0 chr3 84966721 84966788 -74632995 - MIRm SINE MIR -17 259 188 8 1233 326 255 101 28 chr3 84968618 84968727 -74631056 + MER5B DNA MER1_type 35 151 -27 8 1233 655 301 140 47 chr3 84969613 84969980 -74629803 - MLT1F1 LTR MaLR -173 375 2 8 1233 1716 198 65 53 chr3 84969992 84970201 -74629582 - RMER4B LTR ERVK -9 457 269 8 1233 185 83 0 27 chr3 84970201 84970238 -74629545 + (CAG)n Simple_repeat Simple_repeat 1 36 0 8 1233 1716 183 74 25 chr3 84970238 84970462 -74629321 - RMER4B LTR ERVK -305 280 36 8 1233 5845 8 0 0 chr3 84970462 84971099 -74628684 - L1Md_T LINE L1 0 6582 5946 8 1233 1716 183 74 25 chr3 84971099 84971132 -74628651 - RMER4B LTR ERVK -550 35 10 8 1233 879 223 81 11 chr3 84971351 84971592 -74628191 - MTC LTR MaLR -149 251 11 8 1233 784 284 83 18 chr3 84971911 84972140 -74627643 + Tigger7 DNA MER2_type 2247 2490 -1 8 1233 216 67 0 0 chr3 84973305 84973335 -74626448 + (TTTG)n Simple_repeat Simple_repeat 1 30 0 8 1233 908 149 0 0 chr3 84973335 84973469 -74626314 - B1_Mur3 SINE Alu -13 136 3 8 1233 468 0 0 0 chr3 84973487 84973539 -74626244 + (TAAA)n Simple_repeat Simple_repeat 2 53 0 8 1233 334 292 160 72 chr3 84973546 84973727 -74626056 + B3A SINE B2 2 198 0 8 1233 1055 71 43 0 chr3 84975146 84975286 -74624497 + B1_Mus2 SINE Alu 2 147 0 8 1233 979 311 31 104 chr3 84977019 84977607 -74622176 + MER44B DNA MER2_type 2 546 -4 8 1233 180 0 0 0 chr3 84978048 84978068 -74621715 + (TC)n Simple_repeat Simple_repeat 2 21 0 8 1233 848 201 52 57 chr3 84979615 84979826 -74619957 - B3 SINE B2 -6 210 1 8 1233 320 197 14 14 chr3 84980422 84980494 -74619289 + L2a LINE L2 3354 3425 -1 8 1233 243 293 6 157 chr3 84980799 84980814 -74618969 - MT2B LTR ERVL -304 297 242 8 1233 516 212 0 56 chr3 84980814 84980955 -74618828 - B1F SINE Alu -15 134 1 8 1233 243 293 6 157 chr3 84980955 84980977 -74618806 - MT2B LTR ERVL -304 241 147 8 1233 455 280 14 94 chr3 84981436 84981639 -74618144 + MLT2B2 LTR ERVL 215 397 -118 8 1233 2530 129 37 32 chr3 84981639 84982072 -74617711 + RMER4B LTR ERVK 1 435 -150 8 1233 1292 180 28 20 chr3 84982109 84982358 -74617425 + MTD LTR MaLR 142 392 -27 8 1233 228 86 0 0 chr3 84982360 84982395 -74617388 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 8 1233 341 301 0 41 chr3 84982672 84982769 -74617014 + L1MEg LINE L1 1882 1974 -4110 8 1233 261 0 0 0 chr3 84983604 84983633 -74616150 + (CA)n Simple_repeat Simple_repeat 2 30 0 8 1233 3927 157 105 32 chr3 84983651 84984502 -74615281 + RLTR13D3 LTR ERVK 1 1114 0 8 1233 318 366 20 103 chr3 84984700 84984895 -74614888 - MER20 DNA MER1_type -3 216 38 8 1233 339 300 124 6 chr3 84984917 84984972 -74614811 + L1MEc LINE L1 1122 1181 -5242 8 1233 813 179 7 33 chr3 84984972 84985109 -74614674 + B1_Mus1 SINE Alu 1 138 -10 8 1233 201 74 0 0 chr3 84985109 84985136 -74614647 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 8 1233 813 179 7 33 chr3 84985136 84985148 -74614635 + B1_Mus1 SINE Alu 139 146 -2 8 1233 339 300 124 6 chr3 84985148 84985253 -74614530 + L1MEc LINE L1 1182 1301 -5122 8 1233 396 0 0 0 chr3 84985272 84985316 -74614467 + (CATA)n Simple_repeat Simple_repeat 2 45 0 8 1233 289 222 14 14 chr3 84985357 84985430 -74614353 + PB1D10 SINE Alu 6 78 -39 8 1233 307 231 37 49 chr3 84985697 84985779 -74614004 + PB1D10 SINE Alu 37 117 0 8 1233 829 36 27 0 chr3 84985814 84985926 -74613857 + (GGAGA)n Simple_repeat Simple_repeat 4 118 0 8 1233 253 179 0 0 chr3 84986013 84986052 -74613731 + ID4 SINE ID 1 39 -44 8 1233 323 322 39 60 chr3 84986089 84986271 -74613512 + L1MEc LINE L1 1845 2037 -5000 8 1233 423 336 90 48 chr3 84986369 84986705 -74613078 + L1MEc LINE L1 2251 2599 -4423 8 1233 243 0 0 0 chr3 84986705 84986732 -74613051 + (CAAA)n Simple_repeat Simple_repeat 4 30 0 8 1233 423 333 112 61 chr3 84986732 84986844 -74612939 + L1MEc LINE L1 2595 2722 -4315 8 1233 421 345 67 59 chr3 84986987 84987240 -74612543 + L1MEc LINE L1 3252 3506 -3435 8 1233 302 324 100 45 chr3 84987253 84987373 -74612410 + L1MEc LINE L1 4609 4745 -2196 8 1233 264 59 0 0 chr3 84987373 84987407 -74612376 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 8 1233 302 324 100 45 chr3 84987407 84987616 -74612167 + L1MEc LINE L1 4746 4956 -1985 8 1233 1583 286 104 50 chr3 84988346 84989399 -74610384 + L1ME1 LINE L1 5027 6138 -41 8 1233 495 0 0 0 chr3 84991315 84991370 -74608413 + (GA)n Simple_repeat Simple_repeat 2 56 0 8 1233 214 364 10 20 chr3 84991655 84991756 -74608027 - L2c LINE L2 -212 3175 3076 8 1233 1173 104 13 162 chr3 84993299 84993528 -74606255 - B2_Mm2 SINE B2 0 195 1 8 1233 209 137 78 0 chr3 84993591 84993642 -74606141 + (TTTG)n Simple_repeat Simple_repeat 4 58 0 8 1233 435 38 0 0 chr3 84994366 84994419 -74605364 + (CA)n Simple_repeat Simple_repeat 2 54 0 8 1233 218 286 0 0 chr3 84995211 84995284 -74604499 + polypyrimidine Low_complexity Low_complexity 1 73 0 8 1233 500 278 94 36 chr3 84995712 84995936 -74603847 + L1ME4a LINE L1 5550 5786 -338 8 1233 2613 192 47 19 chr3 84996264 84996801 -74602982 - RLTR20B3 LTR ERVK -25 552 1 8 1233 2022 210 54 0 chr3 84996835 84997225 -74602558 + MTD LTR MaLR 1 411 -8 8 1233 240 234 90 13 chr3 84998594 84998672 -74601111 - ORR1E LTR MaLR -249 110 27 8 1233 2586 122 102 14 chr3 84998848 84999271 -74600512 + RMER6B LTR ERVK 1 460 -1 8 1233 376 307 97 32 chr3 84999456 84999641 -74600142 + L1ME4a LINE L1 5855 6051 -73 8 1233 364 141 0 30 chr3 84999670 84999736 -74600047 - PB1D10 SINE Alu -1 116 53 8 1233 396 0 0 0 chr3 84999800 84999844 -74599939 + (TA)n Simple_repeat Simple_repeat 2 45 0 8 1233 191 81 54 0 chr3 85000396 85000433 -74599350 + (TATG)n Simple_repeat Simple_repeat 2 40 0 1 1233 722 226 8 0 chr3 85000433 85000566 -74599217 - B1_Mur1 SINE Alu -15 134 1 2 1233 1509 132 0 0 chr3 85000849 85001069 -74598714 + URR1A DNA MER1_type 7 226 0 3 1233 21 0 0 0 chr3 85001095 85001116 -74598667 + AT_rich Low_complexity Low_complexity 1 21 0 4 1233 1121 204 135 7 chr3 85001366 85001645 -74598138 - MTD LTR MaLR 0 419 105 5 1233 218 135 0 51 chr3 85001645 85001684 -74598099 + B3A SINE B2 2 38 -160 6 1233 2395 174 74 58 chr3 85001696 85002197 -74597586 - RLTR18B LTR ERVK -3 509 1 7 1233 482 223 64 0 chr3 85002197 85002291 -74597492 + B3 SINE B2 116 215 -1 6 1233 4471 129 139 15 chr3 85002324 85002945 -74596838 - RMER19B LTR ERVK 0 902 243 8 1233 338 39 0 38 chr3 85002945 85002998 -74596785 + (TTTG)n Simple_repeat Simple_repeat 2 52 0 9 1233 4471 129 139 15 chr3 85002998 85003168 -74596615 - RMER19B LTR ERVK -660 242 14 8 1233 360 198 42 26 chr3 85003164 85003256 -74596527 - MTD LTR MaLR -294 85 1 5 1233 320 111 73 18 chr3 85003256 85003311 -74596472 + tRNA-Ala-GCY_ tRNA tRNA 2 59 -16 1 1233 255 220 0 39 chr3 85004325 85004377 -74595406 - MER5B DNA MER1_type -109 69 20 1 1233 485 313 134 72 chr3 85004959 85005279 -74594504 - ORR1E LTR MaLR 0 359 20 1 1233 290 294 11 21 chr3 85006526 85006620 -74593163 - MER53 DNA hAT -100 93 1 1 1233 300 138 0 0 chr3 85006650 85006715 -74593068 + (C)n Simple_repeat Simple_repeat 1 65 0 1 1233 1109 291 113 16 chr3 85007142 85007565 -74592218 - MLT1C LTR MaLR 0 467 4 1 1233 757 286 146 9 chr3 85008473 85008808 -74590975 - MLT1B LTR MaLR -3 387 7 1 1233 329 286 37 19 chr3 85009515 85009622 -74590161 + MIR3 SINE MIR 97 205 -3 1 1233 735 241 75 12 chr3 85009644 85009884 -74589899 + MamRep605 Unknown Unknown 23 277 -599 1 1233 242 351 78 86 chr3 85010023 85010266 -74589517 + MamRep38 DNA hAT 11 251 -44 1 1233 246 310 0 94 chr3 85010471 85010567 -74589216 + MamRep605 Unknown Unknown 632 718 -158 1 1233 600 170 7 15 chr3 85010764 85010901 -74588882 + CT-rich Low_complexity Low_complexity 1 136 0 2 1233 218 375 34 34 chr3 85010903 85011052 -74588731 + L2 LINE L2 2364 2512 -907 2 1233 226 333 9 87 chr3 85011149 85011264 -74588519 - RLTR22_Mur LTR ERVK -425 1423 1318 2 1233 192 307 43 18 chr3 85013125 85013228 -74586555 - MIRb SINE MIR -159 109 2 2 1233 345 305 97 63 chr3 85013451 85013626 -74586157 + MLT1L LTR MaLR 80 260 -350 2 1233 256 276 13 13 chr3 85013670 85013747 -74586036 + MLT1L LTR MaLR 354 430 -180 2 1233 405 0 0 0 chr3 85013747 85013792 -74585991 + (CA)n Simple_repeat Simple_repeat 2 46 0 2 1233 378 0 0 0 chr3 85013792 85013833 -74585950 + (GA)n Simple_repeat Simple_repeat 2 43 0 2 1233 617 346 71 11 chr3 85014822 85015105 -74584678 - MLT1A0 LTR MaLR -65 300 1 2 1233 545 261 214 11 chr3 85015489 85015671 -74584112 + MER20 DNA MER1_type 1 219 0 2 1233 237 385 48 0 chr3 85015959 85016063 -74583720 + L4 LINE RTE 1474 1582 -447 2 1233 422 367 5 21 chr3 85016180 85016372 -74583411 + L4 LINE RTE 1637 1825 -204 2 1233 235 274 246 21 chr3 85016588 85016746 -74583037 + MIRb SINE MIR 3 197 -71 3 1233 221 302 0 34 chr3 85017512 85017601 -74582182 + (TATATG)n Simple_repeat Simple_repeat 4 89 0 3 1233 278 263 13 26 chr3 85017607 85017685 -74582098 - RSINE1 SINE B4 -4 161 85 3 1233 2236 92 49 0 chr3 85017704 85018008 -74581775 - ORR1A2 LTR MaLR -8 319 1 3 1233 352 350 47 66 chr3 85018008 85018215 -74581568 - B4A SINE B4 -83 209 7 3 1233 360 351 6 35 chr3 85018282 85018456 -74581327 - MER3 DNA MER1_type 0 209 41 3 1233 528 330 67 62 chr3 85019357 85019729 -74580054 + L2a LINE L2 2644 3017 -402 3 1233 906 254 68 34 chr3 85019757 85020022 -74579761 - B4A SINE B4 -11 281 8 3 1233 283 361 75 91 chr3 85020022 85020228 -74579555 + L2a LINE L2 3074 3285 -141 3 1233 1175 168 9 14 chr3 85020228 85020440 -74579343 - B3 SINE B2 -4 212 2 3 1233 283 361 75 91 chr3 85020440 85020553 -74579230 + L2a LINE L2 3286 3388 -38 3 1233 234 259 106 57 chr3 85020564 85020687 -74579096 - MIRm SINE MIR -61 215 87 3 1233 644 294 35 73 chr3 85021051 85021337 -74578446 + ORR1E LTR MaLR 80 354 -5 4 1233 842 290 18 14 chr3 85021494 85021770 -74578013 - B4A SINE B4 -15 277 1 4 1233 1717 166 77 47 chr3 85022002 85022432 -74577351 - Lx9 LINE L1 0 7644 7202 4 1233 1442 187 71 0 chr3 85022431 85022698 -74577085 + Lx9 LINE L1 6910 7195 -449 4 1233 528 313 121 0 chr3 85022694 85022959 -74576824 - L1MB2 LINE L1 -38 6133 5837 4 1233 762 11 0 0 chr3 85023619 85023706 -74576077 + (TC)n Simple_repeat Simple_repeat 1 87 0 4 1233 964 272 65 4 chr3 85023783 85024045 -74575738 - B4A SINE B4 -10 282 5 4 1233 615 282 67 29 chr3 85024047 85024255 -74575528 + MLT1I LTR MaLR 196 411 0 4 1233 228 224 0 56 chr3 85024643 85024714 -74575069 + GA-rich Low_complexity Low_complexity 2 68 0 4 1233 1049 84 6 0 chr3 85025104 85025271 -74574512 + (TCTA)n Simple_repeat Simple_repeat 2 169 0 4 1233 835 155 16 0 chr3 85025274 85025403 -74574380 - B1_Mus1 SINE Alu -7 141 11 4 1233 201 300 81 24 chr3 85025574 85025697 -74574086 - MIRb SINE MIR -53 215 86 5 1233 479 359 57 63 chr3 85028352 85028685 -74571098 - ORR1E LTR MaLR -11 348 18 5 1233 15023 60 5 8 chr3 85028700 85030618 -74569165 + L1_Mm LINE L1 3675 5586 -297 5 1233 7872 59 4 6 chr3 85030618 85031604 -74568179 + L1Md_F2 LINE L1 5587 6570 -12 5 1233 1933 235 14 38 chr3 85031778 85032198 -74567585 - MTD LTR MaLR -7 412 3 5 1233 4273 214 110 50 chr3 85032203 85033386 -74566397 - MTD-int LTR MaLR 0 1258 5 5 1233 1405 207 147 8 chr3 85033395 85033750 -74566033 - MTD LTR MaLR -15 404 1 5 1233 862 232 36 36 chr3 85034023 85034215 -74565568 + B3A SINE B2 7 198 0 5 1233 234 371 15 8 chr3 85034241 85034374 -74565409 + CT-rich Low_complexity Low_complexity 4 137 0 5 1233 227 31 31 0 chr3 85034766 85034798 -74564985 + (CCCCCA)n Simple_repeat Simple_repeat 4 36 0 5 1233 843 141 6 69 chr3 85034932 85035092 -74564691 - B1_Mur4 SINE Alu 0 150 1 5 1233 249 33 0 0 chr3 85035787 85035817 -74563966 + (TTAA)n Simple_repeat Simple_repeat 1 30 0 5 1233 788 100 8 0 chr3 85037288 85037408 -74562375 + (TCTA)n Simple_repeat Simple_repeat 4 124 0 6 1233 596 247 4 0 chr3 85037564 85037846 -74561937 + (TA)n Simple_repeat Simple_repeat 1 283 0 6 1233 812 267 96 48 chr3 85037871 85038142 -74561641 - B4 SINE B4 0 292 9 6 1233 676 284 37 21 chr3 85038159 85038320 -74561463 - L1MA5A LINE L1 -359 5938 5775 6 1233 216 0 0 0 chr3 85038320 85038344 -74561439 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 6 1233 676 293 45 19 chr3 85038344 85038460 -74561323 - L1MA5A LINE L1 -523 5774 5611 6 1233 188 235 20 0 chr3 85038552 85038603 -74561180 - MIRm SINE MIR -148 128 77 6 1233 228 218 0 0 chr3 85040412 85040467 -74559316 + (CA)n Simple_repeat Simple_repeat 1 55 0 6 1233 288 164 0 0 chr3 85040479 85040546 -74559237 + CT-rich Low_complexity Low_complexity 1 67 0 6 1233 200 347 21 0 chr3 85040932 85040992 -74558791 - MIR SINE MIR -182 86 25 6 1233 266 325 0 95 chr3 85041171 85041297 -74558486 + PB1 SINE Alu 1 114 -13 6 1233 348 127 0 0 chr3 85041300 85041355 -74558428 + (CA)n Simple_repeat Simple_repeat 2 56 0 7 1233 255 282 126 23 chr3 85041415 85041502 -74558281 - MIR SINE MIR -12 250 155 7 1233 548 318 32 73 chr3 85042962 85043137 -74556646 - ID_B1 SINE B4 -2 222 60 7 1233 418 301 7 29 chr3 85043137 85043277 -74556506 - B1F SINE Alu -10 139 3 7 1233 312 317 62 70 chr3 85043277 85043324 -74556459 - B4 SINE B4 -233 59 18 7 1233 2189 151 64 11 chr3 85044169 85044543 -74555240 + ORR1B1 LTR MaLR 1 394 0 7 1233 466 278 9 0 chr3 85044755 85044863 -74554920 + MER117 DNA MER1_type 54 162 -35 7 1233 508 290 67 36 chr3 85045364 85045557 -74554226 + MLT2F LTR ERVL 352 550 -113 7 1233 590 286 21 0 chr3 85045603 85045743 -74554040 + B1_Mur1 SINE Alu 1 143 -6 7 1233 221 237 70 0 chr3 85045756 85045870 -74553913 + (TCTA)n Simple_repeat Simple_repeat 2 123 0 7 1233 362 250 100 117 chr3 85045874 85046173 -74553610 - ORR1E LTR MaLR -13 357 38 7 1233 244 311 0 16 chr3 85046172 85046234 -74553549 - MLT1A1 LTR MaLR -282 126 66 8 1233 506 119 12 0 chr3 85046327 85046411 -74553372 + (TCTA)n Simple_repeat Simple_repeat 2 86 0 8 1233 263 308 0 0 chr3 85046519 85046571 -74553212 + LTR16A LTR ERVL 175 226 -225 8 1233 370 200 0 0 chr3 85046616 85046681 -74553102 - ID_B1 SINE B4 -62 162 98 8 1233 2912 243 132 21 chr3 85046882 85047656 -74552127 + RMER13A LTR ERVK 1 860 0 8 1233 247 246 193 51 chr3 85048919 85049072 -74550711 + L2a LINE L2 3214 3424 -2 8 1233 219 204 0 0 chr3 85049186 85049235 -74550548 + (ATG)n Simple_repeat Simple_repeat 2 50 0 8 1233 1903 160 57 8 chr3 85049732 85050085 -74549698 + ORR1D1 LTR MaLR 5 374 0 8 1233 395 243 188 24 chr3 85051600 85051689 -74548094 - Tigger2b DNA MER2_type -485 241 141 8 1233 288 0 0 0 chr3 85051689 85051721 -74548062 + (TTA)n Simple_repeat Simple_repeat 2 33 0 8 1233 395 243 188 24 chr3 85051721 85051838 -74547945 - Tigger2b DNA MER2_type -586 140 2 8 1233 664 235 26 41 chr3 85051880 85052075 -74547708 - B3A SINE B2 -4 194 3 9 1233 923 165 41 0 chr3 85052432 85052602 -74547181 - URR1A DNA MER1_type -5 221 45 9 1233 377 270 56 6 chr3 85052866 85053065 -74546718 + MIR SINE MIR 3 205 -3 9 1233 28 0 0 0 chr3 85053172 85053200 -74546583 + AT_rich Low_complexity Low_complexity 1 28 0 9 1233 716 333 105 27 chr3 85053279 85053948 -74545835 - L1MC4a LINE L1 -1858 6024 5304 9 1233 212 236 0 0 chr3 85054289 85054344 -74545439 - MIRc SINE MIR 0 268 214 9 1233 191 305 78 87 chr3 85054584 85054699 -74545084 - L3 LINE CR1 -64 4425 4312 9 1233 441 0 0 0 chr3 85054982 85055031 -74544752 + (TG)n Simple_repeat Simple_repeat 1 49 0 9 1233 903 281 31 39 chr3 85055147 85055403 -74544380 - B4 SINE B4 -37 255 2 9 1233 400 261 73 15 chr3 85055575 85055711 -74544072 - RMER15 LTR ERVL -14 561 418 9 1233 1330 283 100 20 chr3 85056042 85056401 -74543382 + L1M3 LINE L1 3299 3685 -2455 1 1233 192 77 0 0 chr3 85056401 85056427 -74543356 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 1 1233 1330 283 100 20 chr3 85056427 85056679 -74543104 + L1M3 LINE L1 3686 3958 -2182 1 1233 371 292 26 17 chr3 85056697 85056812 -74542971 + B4A SINE B4 18 133 -159 1 1233 920 268 124 66 chr3 85057004 85057748 -74542035 + L1M3 LINE L1 4535 5321 -822 1 1233 420 254 145 0 chr3 85057757 85057895 -74541888 + B3A SINE B2 3 160 -38 1 1233 436 45 15 15 chr3 85057899 85057967 -74541816 + (CA)n Simple_repeat Simple_repeat 2 69 0 1 1233 1399 162 11 135 chr3 85057998 85058361 -74541422 - ORR1A4 LTR MaLR -8 321 4 1 1233 243 311 48 0 chr3 85058361 85058464 -74541319 + L1M3 LINE L1 5335 5442 -870 1 1233 4824 121 44 35 chr3 85058463 85059468 -74540315 + L1VL1 LINE L1 210 1226 -2472 1 1233 13517 55 9 1 chr3 85059435 85061131 -74538652 + L1Md_F3 LINE L1 3877 5586 -297 1 1233 8381 35 11 2 chr3 85061131 85062120 -74537663 + L1Md_F3 LINE L1 5587 6584 0 1 1233 29064 119 10 7 chr3 85062137 85064365 -74535418 + L1_Mus2 LINE L1 1410 3651 -2232 1 1233 2718 41 4 202 chr3 85064365 85064851 -74534932 - RLTR10 LTR ERVK 0 390 1 1 154 29064 112 9 6 chr3 85064851 85067128 -74532655 + L1_Mus2 LINE L1 3652 5929 -637 1 1234 639 272 31 6 chr3 85067403 85067566 -74532217 + B3A SINE B2 2 168 -30 1 1234 396 0 0 0 chr3 85067567 85067611 -74532172 + (CA)n Simple_repeat Simple_repeat 2 45 0 1 1234 394 247 0 0 chr3 85069988 85070069 -74529714 + ID4 SINE ID 2 82 -1 1 1234 180 0 0 0 chr3 85071038 85071058 -74528725 + (TG)n Simple_repeat Simple_repeat 2 21 0 1 1234 25 0 0 0 chr3 85071846 85071871 -74527912 + AT_rich Low_complexity Low_complexity 1 25 0 1 1234 243 394 0 14 chr3 85072005 85072144 -74527639 + L2b LINE L2 3237 3373 -2 1 1234 490 196 9 38 chr3 85072284 85072390 -74527393 - RSINE1 SINE B4 -57 108 6 1 1234 5454 89 61 0 chr3 85072428 85073178 -74526605 - L1_Mus1 LINE L1 0 6567 5772 1 1234 483 187 143 0 chr3 85073178 85073269 -74526514 - PB1D10 SINE Alu -13 104 1 1 1234 3638 111 23 31 chr3 85073411 85074055 -74525728 + RMER6A LTR ERVK 118 756 0 1 1234 1851 192 48 21 chr3 85075945 85076317 -74523466 - RLTR14 LTR ERV1 0 382 1 1 1234 1093 54 7 0 chr3 85077028 85077175 -74522608 - B1_Mus1 SINE Alu 0 148 1 1 1234 322 274 0 0 chr3 85079855 85079928 -74519855 - ID4_ SINE ID -3 80 8 1 1234 446 49 16 0 chr3 85079947 85080008 -74519775 + (TC)n Simple_repeat Simple_repeat 1 62 0 1 1234 495 33 0 0 chr3 85080009 85080070 -74519713 + (TG)n Simple_repeat Simple_repeat 2 62 0 1 1234 417 70 0 0 chr3 85080305 85080362 -74519421 + (TATG)n Simple_repeat Simple_repeat 4 60 0 1 1234 813 186 96 0 chr3 85080362 85080529 -74519254 - B3 SINE B2 -28 188 6 1 1234 227 73 0 47 chr3 85080942 85080985 -74518798 + (TCTCTG)n Simple_repeat Simple_repeat 2 42 0 1 1234 306 0 0 0 chr3 85080992 85081026 -74518757 + (CA)n Simple_repeat Simple_repeat 2 35 0 1 1234 396 146 105 47 chr3 85081737 85081823 -74517960 + B3A SINE B2 5 95 -103 1 1234 1621 102 112 7 chr3 85081834 85082111 -74517672 + IAPEY2_LTR LTR ERVK 32 337 -20 1 1234 1618 152 23 11 chr3 85082111 85082473 -74517310 + IAPEY3-int LTR ERVK 20 432 -7081 1 1234 769 73 9 0 chr3 85082876 85082986 -74516797 + IAPEY2_LTR LTR ERVK 244 354 -3 1 1234 217 258 31 31 chr3 85082986 85083045 -74516738 + B3A SINE B2 85 143 -55 1 1234 513 0 0 0 chr3 85083045 85083102 -74516681 + (TATG)n Simple_repeat Simple_repeat 2 58 0 1 1234 3908 141 132 1 chr3 85083163 85083815 -74515968 + RMER19A LTR ERVK 1 737 0 1 1234 231 324 29 0 chr3 85084475 85084580 -74515203 - MIRb SINE MIR -37 231 124 1 1234 279 219 36 12 chr3 85084858 85084941 -74514842 - MIR SINE MIR -134 128 44 1 1234 1338 18 17 9 chr3 85085549 85085784 -74513999 + (TAGA)n Simple_repeat Simple_repeat 1 237 0 1 1234 249 309 12 0 chr3 85087233 85087314 -74512469 + ID4 SINE ID 2 83 0 1 1234 420 268 32 0 chr3 85087663 85087786 -74511997 + CT-rich Low_complexity Low_complexity 3 129 0 1 1234 572 258 64 40 chr3 85088540 85088723 -74511060 + B3 SINE B2 5 193 -23 1 1234 369 0 0 0 chr3 85088723 85088764 -74511019 + (CA)n Simple_repeat Simple_repeat 1 41 0 1 1234 2424 93 6 0 chr3 85088764 85089085 -74510698 - ORR1A2 LTR MaLR 0 327 5 1 1234 315 0 0 0 chr3 85089085 85089120 -74510663 + (CA)n Simple_repeat Simple_repeat 1 35 0 1 1234 572 258 64 40 chr3 85089120 85089136 -74510647 + B3 SINE B2 194 209 -7 1 1234 260 301 109 46 chr3 85089226 85089465 -74510318 + MIR SINE MIR 8 264 -4 1 1234 394 328 69 43 chr3 85089845 85090033 -74509750 - MLT1J1 LTR MaLR -5 439 247 1 1234 2172 115 48 48 chr3 85090045 85090410 -74509373 - MTB_Mm LTR MaLR 0 407 43 1 1234 247 98 0 0 chr3 85090410 85090451 -74509332 - MTB_Mm-int LTR MaLR 0 1258 1218 1 1234 236 149 0 21 chr3 85090848 85090896 -74508887 + (TATATG)n Simple_repeat Simple_repeat 1 47 0 1 1234 3335 41 2 2 chr3 85091286 85091681 -74508102 + MTA_Mm LTR MaLR 2 396 0 1 1234 318 316 123 42 chr3 85091861 85092239 -74507544 + L2a LINE L2 2849 3250 -176 1 1234 181 286 0 0 chr3 85092302 85092351 -74507432 + L2a LINE L2 3308 3356 -19 1 1234 1209 295 73 47 chr3 85093120 85093847 -74505936 - L1MB7 LINE L1 0 6184 5439 1 1234 1386 261 89 30 chr3 85093881 85094265 -74505518 + MLT2B2 LTR ERVL 64 460 -55 1 1234 213 39 0 0 chr3 85094265 85094291 -74505492 + (TCTG)n Simple_repeat Simple_repeat 3 28 0 1 1234 1386 261 89 30 chr3 85094291 85094333 -74505450 + MLT2B2 LTR ERVL 461 514 -1 1 1234 477 221 146 13 chr3 85094337 85094488 -74505295 - L1MB7 LINE L1 -747 5399 5229 1 1234 437 203 80 27 chr3 85094562 85094718 -74505065 - Lx5 LINE L1 -2 7056 6900 1 1234 2303 64 0 54 chr3 85094919 85095190 -74504593 + L1_Mus1 LINE L1 6266 6535 -32 1 1234 329 0 24 0 chr3 85095190 85095231 -74504552 + (TTTG)n Simple_repeat Simple_repeat 3 44 0 1 1234 1070 81 0 0 chr3 85095231 85095367 -74504416 - B1_Mus1 SINE Alu -12 136 1 1 1234 2303 64 0 54 chr3 85095367 85095409 -74504374 + L1_Mus1 LINE L1 6536 6562 -5 1 1234 188 345 33 22 chr3 85095636 85095728 -74504055 + L2b LINE L2 3282 3374 -1 1 1234 424 333 152 4 chr3 85095914 85096158 -74503625 - LTR33 LTR ERVL -1 514 235 1 1234 1046 198 60 41 chr3 85096951 85097220 -74502563 - RLTR46 LTR ERVK -5 315 42 1 1234 967 330 43 53 chr3 85097265 85097751 -74502032 + MTE-int LTR MaLR 50 530 -1050 1 1234 490 285 15 0 chr3 85097867 85098004 -74501779 + MTE-int LTR MaLR 1147 1285 -295 1 1234 537 280 31 51 chr3 85098007 85098203 -74501580 - MTE-int LTR MaLR -93 1487 1296 1 1234 1197 259 59 10 chr3 85098217 85098626 -74501157 - MLT1C LTR MaLR -36 431 3 1 1234 766 230 137 54 chr3 85099367 85099680 -74500103 - ORR1E LTR MaLR -20 339 1 1 1234 1548 302 86 60 chr3 85099680 85100418 -74499365 - ORR1E-int LTR MaLR -53 1527 646 1 1234 465 19 0 0 chr3 85100418 85100472 -74499311 + (TG)n Simple_repeat Simple_repeat 2 55 0 1 1234 1548 312 60 70 chr3 85100472 85100554 -74499229 - ORR1E-int LTR MaLR -935 645 565 1 1234 1884 275 58 44 chr3 85100554 85101143 -74498640 + Lx8 LINE L1 6820 7416 -57 1 1234 1464 247 105 11 chr3 85101283 85101729 -74498054 - ORR1E-int LTR MaLR -1092 488 1 1 1234 227 319 60 88 chr3 85101727 85101909 -74497874 - ORR1E LTR MaLR -2 377 201 1 1234 521 170 0 19 chr3 85101909 85102017 -74497766 + GA-rich Low_complexity Low_complexity 1 106 0 1 1234 780 242 34 0 chr3 85102023 85102201 -74497582 - ORR1E LTR MaLR -175 184 1 1 1234 338 293 0 0 chr3 85102471 85102553 -74497230 + ID4_ SINE ID 1 82 -1 1 1234 393 206 76 29 chr3 85102564 85102669 -74497114 + PB1D9 SINE Alu 1 110 -10 1 1234 297 0 0 0 chr3 85102672 85102705 -74497078 + (CAAA)n Simple_repeat Simple_repeat 4 36 0 1 1234 369 0 0 0 chr3 85104796 85104837 -74494946 + (TTAG)n Simple_repeat Simple_repeat 2 42 0 1 1234 405 164 0 0 chr3 85104968 85105041 -74494742 + (TTAGGG)n Simple_repeat Simple_repeat 4 76 0 1 1234 429 278 102 132 chr3 85105383 85105648 -74494135 - B4A SINE B4 -23 269 13 1 1234 849 20 0 0 chr3 85105648 85105747 -74494036 + (TCCC)n Simple_repeat Simple_repeat 3 101 0 1 1234 243 0 0 0 chr3 85106121 85106148 -74493635 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 1234 304 243 136 0 chr3 85106330 85106433 -74493350 - MIRb SINE MIR -32 236 120 1 1234 245 329 83 42 chr3 85107088 85107329 -74492454 + ORR1E LTR MaLR 1 251 -108 1 1234 768 220 194 24 chr3 85107534 85107663 -74492120 + MTEb LTR MaLR 1 148 -231 1 1234 2493 83 6 0 chr3 85107663 85107988 -74491795 - ORR1A2 LTR MaLR 0 327 1 1 1234 768 220 194 24 chr3 85107988 85108147 -74491636 + MTEb LTR MaLR 149 337 -42 1 1234 231 202 225 0 chr3 85108603 85108692 -74491091 - LTR48 LTR ERV1 -641 146 38 1 1234 638 136 0 33 chr3 85108977 85109099 -74490684 + B1_Mus1 SINE Alu 28 145 -3 1 1234 2323 106 85 80 chr3 85109147 85109620 -74490163 - IAPLTR2_Mm LTR ERVK 0 475 1 1 1234 6880 38 12 11 chr3 85109620 85110448 -74489335 - IAPEz-int LTR ERVK 0 6481 5653 1 1234 2743 70 0 3 chr3 85110443 85110786 -74488997 - IAPEz-int LTR ERVK -4781 1700 1359 1 1234 3752 62 26 18 chr3 85110786 85111277 -74488506 - IAPEz-int LTR ERVK -5819 662 168 1 1234 228 250 0 0 chr3 85111277 85111321 -74488462 - RLTR27 LTR ERVK -34 275 232 1 1234 1154 124 10 80 chr3 85111330 85111531 -74488252 - IAPEz-int LTR ERVK -6286 195 9 1 1234 2362 111 73 85 chr3 85111532 85112013 -74487770 - IAPLTR2_Mm LTR ERVK 0 475 1 1 1234 660 280 74 21 chr3 85112013 85112203 -74487580 + ID_B1 SINE B4 20 219 -5 1 1234 2924 134 14 8 chr3 85113626 85114108 -74485675 + Lx LINE L1 6161 6645 -9 1 1234 888 101 0 0 chr3 85114108 85114237 -74485546 + (GAAA)n Simple_repeat Simple_repeat 2 130 0 1 1234 180 0 0 0 chr3 85115470 85115490 -74484293 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1 1234 741 159 0 38 chr3 85115492 85115623 -74484160 - B1_Mur3 SINE Alu -6 143 18 1 1234 486 61 0 0 chr3 85115623 85115689 -74484094 + (CCA)n Simple_repeat Simple_repeat 3 68 0 1 1234 377 138 12 0 chr3 85117254 85117334 -74482449 + (CA)n Simple_repeat Simple_repeat 1 81 0 1 1234 332 53 24 85 chr3 85118754 85118836 -74480947 + (CATATA)n Simple_repeat Simple_repeat 5 81 0 1 1234 263 275 24 24 chr3 85119709 85119791 -74479992 + ID4 SINE ID 2 83 0 1 1234 1017 186 90 60 chr3 85120586 85120953 -74478830 - RMER17C LTR ERVK 0 410 76 1 1234 2922 110 4 49 chr3 85120953 85121403 -74478380 - RLTR23 LTR ERV1 0 430 1 1 1234 621 269 18 36 chr3 85121403 85121478 -74478305 - RMER17C LTR ERVK -335 75 1 1 1234 245 281 217 9 chr3 85121914 85122029 -74477754 - MIRc SINE MIR -121 147 9 1 1234 507 306 153 80 chr3 85122558 85122846 -74476937 - MLT1J LTR MaLR -201 311 3 1 1234 205 314 142 28 chr3 85122994 85123135 -74476648 + L3 LINE CR1 3568 3724 -765 1 1234 238 309 54 31 chr3 85123163 85123293 -74476490 + L1MB2 LINE L1 5897 6029 -142 1 1234 269 215 15 30 chr3 85123616 85123683 -74476100 + MTEa LTR MaLR 298 363 -16 1 1234 396 331 62 6 chr3 85124538 85124699 -74475084 + MER5B DNA MER1_type 1 170 -8 2 1234 274 317 28 19 chr3 85125257 85125363 -74474420 + ORR1E LTR MaLR 24 130 -229 2 1234 531 295 44 52 chr3 85125372 85125622 -74474161 - RLTR42-int LTR ERVK -4122 1400 1153 2 1234 243 88 0 0 chr3 85125644 85125678 -74474105 + (TTTTC)n Simple_repeat Simple_repeat 2 35 0 2 1234 225 360 79 98 chr3 85126676 85126993 -74472790 + MLT1A LTR MaLR 56 366 -8 2 1234 290 225 41 61 chr3 85127108 85127192 -74472591 + ORR1D2 LTR MaLR 3 81 -278 2 1234 333 0 0 0 chr3 85127889 85127926 -74471857 + (TG)n Simple_repeat Simple_repeat 1 37 0 2 1234 1085 85 0 22 chr3 85127926 85128201 -74471582 + (GA)n Simple_repeat Simple_repeat 1 269 0 2 1234 901 81 102 9 chr3 85128987 85129139 -74470644 - MTA_Mm LTR MaLR -255 145 1 2 1234 9514 24 3 1 chr3 85129139 85130235 -74469548 - MTA_Mm-int LTR MaLR 0 1098 1 2 1234 3566 18 2 0 chr3 85130235 85130630 -74469153 - MTA_Mm LTR MaLR 0 396 1 2 1234 354 323 61 24 chr3 85130743 85130908 -74468875 + L1M2 LINE L1 5104 5274 -869 2 1234 473 333 78 32 chr3 85131075 85131419 -74468364 + L1MC4a LINE L1 5526 5885 -1997 2 1234 544 309 88 20 chr3 85131717 85132078 -74467705 + MER74C LTR ERVL 12 482 -76 2 1234 463 263 17 17 chr3 85132820 85132936 -74466847 - PB1D10 SINE Alu -1 116 1 2 1234 284 350 19 0 chr3 85133727 85133830 -74465953 + MLT2B2 LTR ERVL 5 109 -406 2 1234 324 233 104 13 chr3 85134024 85134142 -74465641 + ORR1E LTR MaLR 245 367 -3 2 1234 1952 175 65 14 chr3 85135629 85136000 -74463783 + ORR1B1 LTR MaLR 1 390 -4 2 1234 2015 133 0 72 chr3 85136259 85136606 -74463177 + ORR1A3 LTR MaLR 5 326 0 2 1234 314 172 17 0 chr3 85137326 85137384 -74462399 - MER3 DNA MER1_type -111 98 40 2 1234 1622 192 15 89 chr3 85137389 85137522 -74462261 + MTC LTR MaLR 1 108 -313 2 1234 1142 127 23 0 chr3 85137522 85137695 -74462088 - B2_Mm2 SINE B2 -17 178 2 2 1234 1622 192 15 89 chr3 85137695 85137899 -74461884 + MTC LTR MaLR 109 313 -108 2 1234 1654 129 137 64 chr3 85137903 85138276 -74461507 + RLTR9E LTR ERVK 10 409 0 2 1234 659 122 112 9 chr3 85138276 85138392 -74461391 + MTC LTR MaLR 294 421 0 2 1234 1424 23 11 0 chr3 85138515 85138690 -74461093 + (TCTCCC)n Simple_repeat Simple_repeat 2 178 0 2 1234 1748 189 98 12 chr3 85141022 85141410 -74458373 + MTC LTR MaLR 3 391 -30 2 1234 272 204 73 83 chr3 85143993 85144089 -74455694 - PB1D7 SINE Alu -3 117 23 2 1234 721 310 32 67 chr3 85144260 85144661 -74455122 + MLT1B LTR MaLR 4 390 0 2 1234 390 74 48 24 chr3 85144790 85144873 -74454910 + (CAGA)n Simple_repeat Simple_repeat 4 88 0 2 1234 201 360 53 0 chr3 85149576 85149651 -74450132 - L2 LINE L2 -475 2944 2866 2 1234 4102 163 80 78 chr3 85149737 85150637 -74449146 + RMER19B LTR ERVK 1 902 0 2 1234 816 134 0 0 chr3 85150806 85150940 -74448843 + (GGGA)n Simple_repeat Simple_repeat 2 135 0 2 1234 33 56 0 0 chr3 85151588 85151642 -74448141 + AT_rich Low_complexity Low_complexity 1 54 0 2 1234 251 309 12 24 chr3 85151696 85151779 -74448004 - MLT1J1 LTR MaLR -115 329 248 2 1234 189 0 0 0 chr3 85152869 85152890 -74446893 + (CAGC)n Simple_repeat Simple_repeat 2 22 0 2 1234 334 333 7 64 chr3 85153611 85153752 -74446031 + MER94 DNA AcHobo 2 134 0 2 1234 453 388 37 31 chr3 85153752 85154103 -74445680 - Charlie7 DNA MER1_type -2166 446 94 2 1234 861 216 5 91 chr3 85154331 85154540 -74445243 - B3A SINE B2 -2 196 6 2 1234 1045 239 106 8 chr3 85154586 85154895 -74444888 - Lx6 LINE L1 -661 6799 6243 2 1234 2637 246 54 21 chr3 85154889 85155516 -74444267 + Lx6 LINE L1 6807 7454 -6 2 1234 323 317 114 53 chr3 85156328 85156355 -74443428 + CYRA11_Mm Unknown Y-chromosome 151 257 -360 2 1234 945 205 128 5 chr3 85156355 85156551 -74443232 - URR1A DNA MER1_type -6 220 1 2 1234 323 317 114 53 chr3 85156551 85156591 -74443192 + CYRA11_Mm Unknown Y-chromosome 258 429 -188 2 1234 195 398 22 60 chr3 85157008 85157190 -74442593 - L2c LINE L2 -72 3315 3141 2 1234 652 301 77 94 chr3 85157263 85157666 -74442117 - MLT1A1 LTR MaLR -12 396 1 2 1234 483 18 0 0 chr3 85158588 85158644 -74441139 + (GA)n Simple_repeat Simple_repeat 1 56 0 2 1234 225 147 40 13 chr3 85159676 85159752 -74440031 + T-rich Low_complexity Low_complexity 2 79 0 2 1234 213 94 0 0 chr3 85159969 85160001 -74439782 + (TG)n Simple_repeat Simple_repeat 2 33 0 2 1234 932 272 134 42 chr3 85160030 85160291 -74439492 - B4 SINE B4 -3 289 5 2 1234 385 348 69 5 chr3 85160646 85160848 -74438935 + Tigger14a DNA MER2_type 76 290 -34 2 1234 180 327 99 80 chr3 85161433 85161646 -74438137 + MIRb SINE MIR 31 247 -21 2 1234 23 0 0 0 chr3 85161813 85161836 -74437947 + AT_rich Low_complexity Low_complexity 1 23 0 2 1234 909 83 14 14 chr3 85162571 85162717 -74437066 + (GGGAGA)n Simple_repeat Simple_repeat 4 149 0 2 1234 219 136 51 0 chr3 85163326 85163385 -74436398 + (CA)n Simple_repeat Simple_repeat 1 62 0 2 1234 796 141 11 17 chr3 85163405 85163585 -74436198 + (CA)n Simple_repeat Simple_repeat 2 180 0 2 1234 402 21 0 0 chr3 85165050 85165097 -74434686 + (TG)n Simple_repeat Simple_repeat 2 48 0 2 1234 1115 241 45 0 chr3 85165120 85165386 -74434397 - B4A SINE B4 -13 279 2 2 1234 207 0 0 0 chr3 85165492 85165515 -74434268 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 2 1234 289 292 122 17 chr3 85165801 85165916 -74433867 - ORR1E LTR MaLR -222 137 11 2 1234 1333 186 252 9 chr3 85166283 85166620 -74433163 - MTD LTR MaLR 0 419 1 2 1234 279 214 0 0 chr3 85167602 85167658 -74432125 + ID SINE ID 27 82 -142 2 1234 245 253 0 48 chr3 85167658 85167685 -74432098 + BC1_Mm scRNA scRNA 26 104 -48 2 1234 1407 183 34 93 chr3 85167839 85168017 -74431766 - ORR1D1 LTR MaLR -16 358 179 2 1234 315 65 0 0 chr3 85168017 85168063 -74431720 + (CAGA)n Simple_repeat Simple_repeat 1 46 0 2 1234 1407 183 34 93 chr3 85168063 85168240 -74431543 - ORR1D1 LTR MaLR -196 178 25 2 1234 208 257 149 79 chr3 85168646 85168760 -74431023 + L2b LINE L2 3254 3375 0 2 1234 199 343 36 62 chr3 85169607 85169719 -74430064 + L2b LINE L2 3227 3335 -40 2 1234 1009 206 29 29 chr3 85169810 85170020 -74429763 - B3 SINE B2 -6 210 1 2 1234 360 0 0 0 chr3 85170628 85170668 -74429115 + (TG)n Simple_repeat Simple_repeat 2 41 0 2 1234 385 176 13 26 chr3 85170701 85170777 -74429006 - ID4_ SINE ID -6 77 3 2 1234 416 232 0 10 chr3 85170797 85170893 -74428890 - PB1D10 SINE Alu -13 104 10 2 1234 203 234 12 61 chr3 85171935 85172017 -74427766 + GA-rich Low_complexity Low_complexity 2 79 0 2 1234 238 300 33 11 chr3 85173452 85173543 -74426240 + MIRc SINE MIR 22 114 -154 2 1234 1260 125 86 9 chr3 85174931 85175141 -74424642 + URR1A DNA MER1_type 1 226 0 2 1234 846 291 86 3 chr3 85175177 85175501 -74424282 + MLT1B LTR MaLR 40 390 0 2 1234 620 206 188 29 chr3 85176290 85176530 -74423253 + MER2 DNA MER2_type 68 345 0 2 1234 233 304 0 12 chr3 85176682 85176762 -74423021 - L1MD3 LINE L1 -1308 6687 6609 2 1234 399 118 0 0 chr3 85177310 85177386 -74422397 + (TC)n Simple_repeat Simple_repeat 2 77 0 2 1234 303 28 0 0 chr3 85177386 85177422 -74422361 + (CA)n Simple_repeat Simple_repeat 1 36 0 2 1234 207 291 69 30 chr3 85177685 85177816 -74421967 + L4 LINE RTE 1682 1817 -212 2 1234 544 275 21 39 chr3 85178104 85178316 -74421467 - MLT1F1 LTR MaLR -30 624 381 2 1234 392 347 33 104 chr3 85178320 85178619 -74421164 - MLT1F1 LTR MaLR -290 279 2 2 1234 1205 238 108 0 chr3 85179045 85179352 -74420431 + MTE2b LTR MaLR 8 347 -32 2 1234 933 214 52 10 chr3 85179413 85179607 -74420176 - B3 SINE B2 -14 202 1 2 1234 368 296 258 14 chr3 85179660 85179869 -74419914 - ORR1E LTR MaLR -5 354 95 2 1234 955 178 81 38 chr3 85179862 85180072 -74419711 - URR1A DNA MER1_type -6 220 2 2 1234 403 204 54 0 chr3 85180073 85180166 -74419617 - ORR1E LTR MaLR -261 98 1 2 1234 201 147 0 0 chr3 85183351 85183385 -74416398 + (A)n Simple_repeat Simple_repeat 1 34 0 2 1234 244 298 57 51 chr3 85184299 85184476 -74415307 + MIR3 SINE MIR 5 182 -26 2 1234 361 333 25 6 chr3 85184786 85184943 -74414840 - MLT1D LTR MaLR 0 505 346 2 1234 439 194 102 119 chr3 85185187 85185363 -74414420 + MTEa LTR MaLR 205 377 -2 2 1234 965 321 123 42 chr3 85185364 85186130 -74413653 - Charlie1 DNA MER1_type -505 2276 1449 2 1234 811 278 135 28 chr3 85187346 85187701 -74412082 - MLT1E1A LTR MaLR -3 677 285 2 1234 235 383 43 0 chr3 85188175 85188316 -74411467 - MLT1E1A LTR MaLR -506 147 1 2 1234 189 196 0 0 chr3 85189630 85189681 -74410102 + (CA)n Simple_repeat Simple_repeat 2 52 0 2 1234 457 259 0 36 chr3 85189884 85189996 -74409787 - MER91B DNA Tip100 0 190 83 2 1234 217 313 24 0 chr3 85190812 85190895 -74408888 + MIR SINE MIR 99 183 -79 2 1234 225 83 0 0 chr3 85190972 85191008 -74408775 + (CAT)n Simple_repeat Simple_repeat 2 37 0 2 1234 767 243 7 0 chr3 85192307 85192459 -74407324 - RSINE1 SINE B4 -10 155 3 2 1234 710 310 125 13 chr3 85192460 85192764 -74407019 + RCHARR1 DNA MER1_type 3 340 -634 2 1234 823 270 147 32 chr3 85192845 85193347 -74406436 + RMER13A LTR ERVK 98 657 -203 2 1234 922 208 83 29 chr3 85193487 85193764 -74406019 + RCHARR1 DNA MER1_type 386 677 -297 2 1234 976 53 15 0 chr3 85193766 85193899 -74405884 + B1_Mus1 SINE Alu 13 147 -1 2 1234 987 256 59 15 chr3 85194074 85194344 -74405439 - B4 SINE B4 -6 286 5 2 1234 561 224 19 45 chr3 85194349 85194503 -74405280 + RCHARR1 DNA MER1_type 824 973 -1 2 1234 349 316 0 34 chr3 85195814 85195932 -74403851 + MIR SINE MIR 134 247 -15 2 1234 216 0 0 0 chr3 85196459 85196483 -74403300 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2 154 501 345 45 62 chr3 85196547 85196905 -74402878 + ORR1E LTR MaLR 8 359 0 2 1235 213 39 0 0 chr3 85198274 85198300 -74401483 + (TTTTG)n Simple_repeat Simple_repeat 5 30 0 2 1235 180 262 0 0 chr3 85199945 85199987 -74399796 - MIRc SINE MIR -107 161 120 2 1235 419 267 28 19 chr3 85200059 85200166 -74399617 + PB1D10 SINE Alu 9 116 -4 2 1235 298 321 0 76 chr3 85200070 85200188 -74399595 + ID_B1 SINE B4 99 207 -17 2 1235 350 208 0 158 chr3 85200337 85200571 -74399212 - RMER17C LTR ERVK -135 275 79 3 1235 1204 68 0 0 chr3 85200735 85200882 -74398901 - B1_Mus1 SINE Alu -1 147 1 3 1235 266 331 174 29 chr3 85200985 85201336 -74398447 + L2a LINE L2 2449 2850 -569 3 1235 1706 172 3 59 chr3 85201365 85201635 -74398148 - ORR1A4 LTR MaLR -8 321 54 3 1235 2169 97 80 34 chr3 85201635 85201986 -74397797 - RLTR9A LTR ERVK -1 367 1 3 1235 1706 172 3 59 chr3 85201986 85202055 -74397728 - ORR1A4 LTR MaLR -276 53 1 3 1235 423 0 0 0 chr3 85202211 85202258 -74397525 + (TG)n Simple_repeat Simple_repeat 2 48 0 3 1235 246 389 59 55 chr3 85202448 85202668 -74397115 + LTR16E2 LTR ERVL 47 267 -301 3 1235 719 202 152 16 chr3 85202905 85203096 -74396687 - ID_B1 SINE B4 0 224 8 3 1235 636 14 0 0 chr3 85203136 85203209 -74396574 + (CA)n Simple_repeat Simple_repeat 2 74 0 3 1235 325 304 69 29 chr3 85203210 85203383 -74396400 + L2a LINE L2 3197 3376 -50 3 1235 414 266 149 16 chr3 85204734 85204944 -74394839 + Lx8 LINE L1 5661 5896 -1577 3 1235 279 0 0 0 chr3 85204945 85204976 -74394807 + (TG)n Simple_repeat Simple_repeat 1 31 0 3 1235 1395 37 0 0 chr3 85205154 85205399 -74394384 + (GAA)n Simple_repeat Simple_repeat 1 245 0 3 1235 235 293 27 0 chr3 85205509 85205584 -74394199 + L1MA10 LINE L1 6196 6272 -62 3 1235 476 302 0 0 chr3 85205597 85205713 -74394070 + RSINE1 SINE B4 41 156 -9 3 1235 363 73 0 0 chr3 85205713 85205768 -74394015 + (CAGA)n Simple_repeat Simple_repeat 4 58 0 3 1235 982 262 86 20 chr3 85206548 85206852 -74392931 - ORR1D2 LTR MaLR -3 367 44 3 1235 285 29 0 0 chr3 85207492 85207526 -74392257 + (CAT)n Simple_repeat Simple_repeat 1 34 0 3 1235 315 0 0 0 chr3 85207526 85207561 -74392222 + (TC)n Simple_repeat Simple_repeat 1 35 0 3 1235 423 0 0 0 chr3 85207561 85207607 -74392176 + (CA)n Simple_repeat Simple_repeat 1 47 0 3 1235 234 0 0 0 chr3 85207806 85207832 -74391951 + (TGAA)n Simple_repeat Simple_repeat 2 27 0 3 1235 183 333 75 0 chr3 85207942 85208035 -74391748 + MIR SINE MIR 13 112 -150 3 1235 360 0 0 0 chr3 85208312 85208352 -74391431 + (TG)n Simple_repeat Simple_repeat 1 40 0 3 1235 659 315 89 4 chr3 85208406 85208664 -74391119 - B4A SINE B4 -12 280 1 3 1235 654 130 0 0 chr3 85208925 85209033 -74390750 + (CA)n Simple_repeat Simple_repeat 1 108 0 3 1235 227 178 0 43 chr3 85210143 85210190 -74389593 + T-rich Low_complexity Low_complexity 2 46 0 3 1235 2473 178 71 99 chr3 85211450 85212054 -74387729 + RMER19B LTR ERVK 1 587 -315 3 1235 612 158 0 0 chr3 85212057 85212158 -74387625 + RMER19B LTR ERVK 802 902 0 3 1235 430 355 73 23 chr3 85212805 85213105 -74386678 + ORR1E LTR MaLR 25 339 -20 3 1235 2409 161 15 0 chr3 85214997 85215408 -74384375 - RMER4A LTR ERVK 0 466 50 3 1235 1737 107 0 24 chr3 85215449 85215699 -74384084 - MurERV4-int LTR ERVK -2672 2588 2345 3 1235 1579 163 78 66 chr3 85215698 85216046 -74383737 - MurERV4-int LTR ERVK -4875 385 34 3 1235 570 174 9 9 chr3 85216068 85216157 -74383626 - RMER4A LTR ERVK -8 458 369 3 1235 1108 71 7 0 chr3 85216157 85216298 -74383485 + B1_Mus2 SINE Alu 1 142 -5 3 1235 570 174 9 9 chr3 85216298 85216318 -74383465 - RMER4A LTR ERVK -98 368 349 3 1235 351 113 0 0 chr3 85216324 85216377 -74383406 + (GGAGAA)n Simple_repeat Simple_repeat 1 53 0 3 1235 1974 174 21 10 chr3 85216377 85216760 -74383023 - RMER4A LTR ERVK -79 387 1 3 1235 764 232 67 26 chr3 85216777 85217022 -74382761 - L1MB4 LINE L1 -55 6128 5877 3 1235 250 287 153 15 chr3 85217449 85217511 -74382272 + MIR SINE MIR 2 75 -187 3 1235 1392 260 58 3 chr3 85217511 85217671 -74382112 + ORR1D2 LTR MaLR 5 165 -205 3 1235 483 18 0 0 chr3 85217671 85217727 -74382056 + (TC)n Simple_repeat Simple_repeat 1 56 0 3 1235 1392 260 58 3 chr3 85217727 85217913 -74381870 + ORR1D2 LTR MaLR 166 369 -1 3 1235 250 287 153 15 chr3 85217913 85217981 -74381802 + MIR SINE MIR 76 150 -112 3 1235 391 157 22 0 chr3 85218246 85218335 -74381448 + (TCTA)n Simple_repeat Simple_repeat 4 94 0 3 1235 876 37 0 0 chr3 85218851 85218959 -74380824 + (TC)n Simple_repeat Simple_repeat 2 109 0 3 1235 189 0 0 0 chr3 85218959 85218979 -74380804 + (TG)n Simple_repeat Simple_repeat 2 22 0 3 1235 325 219 16 0 chr3 85218983 85219047 -74380736 - ID4_ SINE ID -11 72 8 3 1235 454 278 156 31 chr3 85219377 85219633 -74380150 + B4A SINE B4 1 288 -4 3 1235 383 56 19 0 chr3 85219644 85219698 -74380085 + (CA)n Simple_repeat Simple_repeat 2 56 0 3 1235 27 0 0 0 chr3 85222740 85222767 -74377016 + AT_rich Low_complexity Low_complexity 1 27 0 3 1235 255 336 73 15 chr3 85224125 85224261 -74375522 - MIRb SINE MIR -1 267 124 3 1235 2067 184 25 0 chr3 85224286 85224651 -74375132 - ORR1D1 LTR MaLR 0 374 1 3 1235 227 312 175 0 chr3 85226142 85226222 -74373561 + MER117 DNA MER1_type 42 135 -62 3 1235 185 0 40 0 chr3 85228020 85228045 -74371738 + (CA)n Simple_repeat Simple_repeat 2 27 0 3 1235 964 251 55 70 chr3 85228186 85228343 -74371440 - MER45B DNA Tip100 0 1040 881 3 1235 774 220 232 32 chr3 85228343 85228657 -74371126 + MTE2b LTR MaLR 3 379 0 3 1235 964 251 55 70 chr3 85228657 85228842 -74370941 - MER45B DNA Tip100 -160 880 703 3 1235 471 63 0 0 chr3 85229090 85229153 -74370630 + (TG)n Simple_repeat Simple_repeat 1 63 0 3 1235 543 287 122 59 chr3 85229174 85229224 -74370559 - B4A SINE B4 -38 254 210 3 1235 5113 151 62 23 chr3 85229224 85230092 -74369691 + RMER19B LTR ERVK 1 902 0 3 1235 543 287 122 59 chr3 85230092 85230278 -74369505 - B4A SINE B4 -83 209 3 3 1235 7401 32 3 9 chr3 85230375 85231268 -74368515 - L1Md_F3 LINE L1 0 6584 5697 3 1235 346 308 0 0 chr3 85231293 85231384 -74368399 - MER45B DNA Tip100 -342 698 608 3 1235 639 253 63 55 chr3 85231387 85231625 -74368158 - Lx8 LINE L1 -409 7064 6825 3 1235 212 244 0 0 chr3 85233031 85233072 -74366711 + MER91B DNA Tip100 88 128 -62 3 1235 2214 187 42 78 chr3 85234261 85234347 -74365436 - RLTR20A LTR ERVK 0 541 441 3 1235 216 0 0 0 chr3 85234347 85234371 -74365412 + (CA)n Simple_repeat Simple_repeat 2 25 0 3 1235 2214 187 42 78 chr3 85234371 85234836 -74364947 - RLTR20A LTR ERVK -101 440 11 3 1235 182 323 32 16 chr3 85234882 85234945 -74364838 - MIRc SINE MIR -128 140 77 3 1235 1059 250 40 37 chr3 85235793 85236122 -74363661 - ORR1D2 LTR MaLR 0 374 1 3 1235 230 216 20 0 chr3 85236143 85236194 -74363589 + L1_Mur3 LINE L1 5678 5729 -151 3 1235 253 270 173 19 chr3 85236277 85236485 -74363298 + L1ME4a LINE L1 5884 6123 -1 3 1235 265 357 17 42 chr3 85236533 85236653 -74363130 - MER5A DNA MER1_type -56 133 17 3 1235 246 245 19 0 chr3 85236992 85237045 -74362738 - LTR33B LTR ERVL -396 107 54 3 1235 224 226 130 120 chr3 85237873 85238089 -74361694 + L3 LINE CR1 2009 2226 -2263 3 1235 237 322 72 32 chr3 85238672 85238797 -74360986 + MLT1A1 LTR MaLR 254 383 -25 3 1235 240 316 51 0 chr3 85240675 85240754 -74359029 - PB1D10 SINE Alu -27 90 8 3 1235 1097 242 73 41 chr3 85241248 85241562 -74358221 + MTEa LTR MaLR 1 324 -55 3 1235 452 174 11 0 chr3 85241563 85241655 -74358128 + CT-rich Low_complexity Low_complexity 2 94 0 3 1235 441 0 0 0 chr3 85241939 85241988 -74357795 + (GTTTG)n Simple_repeat Simple_repeat 1 49 0 3 1235 360 276 29 15 chr3 85242417 85242553 -74357230 + B1F1 SINE Alu 4 141 -8 3 1235 244 377 0 0 chr3 85242568 85242637 -74357146 + ID4 SINE ID 2 70 -13 3 1235 371 38 0 37 chr3 85242655 85242709 -74357074 + (CATA)n Simple_repeat Simple_repeat 2 53 0 3 1235 280 208 54 163 chr3 85242812 85242857 -74356926 - MIRb SINE MIR -103 165 132 3 1235 298 284 0 47 chr3 85242857 85242942 -74356841 + ID4 SINE ID 3 83 0 3 1235 280 208 54 163 chr3 85242942 85242988 -74356795 - MIRb SINE MIR -137 131 84 3 1235 865 122 0 18 chr3 85243098 85243143 -74356640 + (GAA)n Simple_repeat Simple_repeat 3 47 0 3 1235 1164 91 0 0 chr3 85243143 85243319 -74356464 + (GGA)n Simple_repeat Simple_repeat 3 178 0 3 1235 1053 122 0 6 chr3 85243319 85243671 -74356112 + (GAA)n Simple_repeat Simple_repeat 1 349 0 3 1235 189 0 0 0 chr3 85243756 85243777 -74356006 + (A)n Simple_repeat Simple_repeat 1 21 0 3 1235 216 0 0 0 chr3 85243866 85243890 -74355893 + (TCCC)n Simple_repeat Simple_repeat 1 24 0 3 1235 405 289 129 31 chr3 85244069 85244262 -74355521 + MLT1H LTR MaLR 2 213 -336 3 1235 334 275 114 47 chr3 85244263 85244412 -74355371 + B4 SINE B4 6 164 -128 3 1235 294 29 0 0 chr3 85244452 85244487 -74355296 + (TGAA)n Simple_repeat Simple_repeat 3 37 0 3 1235 200 271 0 0 chr3 85244541 85244589 -74355194 + (CA)n Simple_repeat Simple_repeat 1 48 0 3 1235 331 315 114 38 chr3 85244596 85244860 -74354923 + MLT1H LTR MaLR 224 507 -42 3 1235 369 307 156 38 chr3 85245665 85245851 -74353932 - MER58C DNA MER1_type -2 213 6 3 1235 473 312 6 55 chr3 85247410 85247593 -74352190 - MLT1J LTR MaLR -102 410 237 3 1235 2295 227 46 52 chr3 85247739 85248329 -74351454 + RLTR18 LTR ERVK 28 613 -3 3 1235 288 0 0 0 chr3 85248882 85248914 -74350869 + (TC)n Simple_repeat Simple_repeat 2 33 0 3 1235 360 88 0 0 chr3 85248914 85248970 -74350813 + (TG)n Simple_repeat Simple_repeat 2 58 0 3 1235 210 71 0 0 chr3 85248970 85248998 -74350785 + (TC)n Simple_repeat Simple_repeat 2 29 0 3 1235 240 167 0 0 chr3 85249029 85249077 -74350706 + GA-rich Low_complexity Low_complexity 2 49 0 3 1235 325 259 188 22 chr3 85249084 85249167 -74350616 + Lx8 LINE L1 6208 6293 -1180 3 1235 1023 120 0 0 chr3 85249167 85249325 -74350458 + (TCCCC)n Simple_repeat Simple_repeat 4 161 0 3 1235 325 259 188 22 chr3 85249325 85249379 -74350404 + Lx8 LINE L1 6294 6367 -1106 3 1235 450 310 168 15 chr3 85249380 85249706 -74350077 - Lx8 LINE L1 -82 7391 7002 3 1235 226 288 0 48 chr3 85250100 85250184 -74349599 - MLT1J LTR MaLR -204 308 229 3 1235 707 291 38 0 chr3 85250802 85251015 -74348768 - ID_B1 SINE B4 0 224 4 3 1235 346 247 0 36 chr3 85251459 85251627 -74348156 + (TG)n Simple_repeat Simple_repeat 2 163 0 3 1235 275 252 0 28 chr3 85251662 85251768 -74348015 + (TG)n Simple_repeat Simple_repeat 2 104 0 3 1235 1035 247 65 4 chr3 85251806 85252066 -74347717 - B4 SINE B4 -16 276 1 3 1235 626 324 124 46 chr3 85252240 85252586 -74347197 + MLT1A LTR MaLR 1 373 -1 3 1235 256 191 21 0 chr3 85252677 85252771 -74347012 + C-rich Low_complexity Low_complexity 1 96 0 3 1235 263 215 77 0 chr3 85253063 85253128 -74346655 - ID SINE ID -140 84 15 3 1235 184 373 0 12 chr3 85253156 85253240 -74346543 + L2a LINE L2 3340 3422 -4 4 1235 365 316 87 19 chr3 85254734 85254895 -74344888 + ID_B1 SINE B4 5 176 -48 4 1235 454 257 25 4 chr3 85254806 85254936 -74344847 + PB1D10 SINE Alu 6 138 -11 4 1235 1141 229 5 5 chr3 85256323 85256542 -74343241 - ID_B1 SINE B4 0 224 6 4 1235 3750 120 34 20 chr3 85256702 85257289 -74342494 - RLTR17 LTR ERVK 0 692 98 4 1235 1561 212 88 22 chr3 85257306 85257668 -74342115 - MTD LTR MaLR -33 386 1 4 1235 328 273 23 51 chr3 85259027 85259158 -74340625 - MLT1A1 LTR MaLR 0 408 229 4 1235 408 40 0 0 chr3 85259244 85259294 -74340489 + (TTAG)n Simple_repeat Simple_repeat 4 53 0 4 1235 251 286 136 50 chr3 85259682 85259822 -74339961 + L2a LINE L2 3266 3417 -9 4 1235 2265 125 27 3 chr3 85261049 85261387 -74338396 + ORR1A1 LTR MaLR 1 346 0 4 1235 735 262 161 35 chr3 85261710 85261995 -74337788 + ORR1E LTR MaLR 33 353 -6 4 1235 217 264 72 62 chr3 85262010 85262107 -74337676 + L2c LINE L2 3289 3386 -1 4 1235 194 310 58 115 chr3 85262110 85262318 -74337465 - MIRb SINE MIR -42 226 31 4 1235 4366 153 12 20 chr3 85262951 85263713 -74336070 + RMER6A LTR ERVK 1 756 0 4 1235 297 0 0 0 chr3 85264680 85264713 -74335070 + (TG)n Simple_repeat Simple_repeat 1 33 0 4 1235 423 0 0 0 chr3 85264713 85264759 -74335024 + (GA)n Simple_repeat Simple_repeat 1 47 0 4 1235 306 202 80 25 chr3 85265279 85265388 -74334395 + ID2 SINE ID 3 115 -37 4 1235 429 89 25 25 chr3 85265388 85265469 -74334314 + (GGGGA)n Simple_repeat Simple_repeat 3 83 0 4 1235 301 328 86 14 chr3 85265767 85265906 -74333877 - ORR1E LTR MaLR -210 149 1 4 1235 315 71 0 0 chr3 85266266 85266308 -74333475 + (CA)n Simple_repeat Simple_repeat 1 42 0 4 1235 252 0 0 0 chr3 85266308 85266336 -74333447 + (TAAAAA)n Simple_repeat Simple_repeat 1 28 0 4 1235 1906 201 28 0 chr3 85267020 85267384 -74332399 - ORR1D1 LTR MaLR 0 374 1 4 1235 515 275 34 40 chr3 85267728 85267876 -74331907 + B1F SINE Alu 1 147 -2 4 1235 484 291 126 54 chr3 85267881 85268142 -74331641 + B4 SINE B4 2 281 -11 4 1235 644 267 133 94 chr3 85268355 85268611 -74331172 + MLT1B LTR MaLR 116 381 -9 4 1235 1966 159 17 0 chr3 85268849 85269195 -74330588 - RLTR15 LTR ERVK -3 356 5 4 1235 230 256 73 141 chr3 85270284 85270461 -74329322 - Charlie13b DNA Charlie -314 198 34 4 1235 249 196 0 0 chr3 85271129 85271180 -74328603 + (TG)n Simple_repeat Simple_repeat 1 51 0 4 1235 363 120 0 0 chr3 85271230 85271280 -74328503 - HAL1-3A_ME LINE L1 -833 2025 1976 4 1235 462 259 0 0 chr3 85271284 85271427 -74328356 + (TG)n Simple_repeat Simple_repeat 1 143 0 4 1235 262 324 0 0 chr3 85272217 85272285 -74327498 + ID4 SINE ID 5 72 -11 4 1235 252 0 0 0 chr3 85272889 85272917 -74326866 + (TTA)n Simple_repeat Simple_repeat 2 29 0 4 1235 180 0 0 0 chr3 85273240 85273260 -74326523 + (GA)n Simple_repeat Simple_repeat 2 21 0 4 1235 435 38 0 0 chr3 85275032 85275085 -74324698 + (CA)n Simple_repeat Simple_repeat 1 53 0 4 1235 305 139 0 60 chr3 85275162 85275246 -74324537 + GA-rich Low_complexity Low_complexity 3 81 0 4 1235 418 271 179 19 chr3 85275463 85275670 -74324113 + CR1_Mam LINE CR1 712 951 -1253 4 1235 527 319 134 22 chr3 85275972 85276338 -74323445 + L1MD2 LINE L1 5944 6350 -9 4 1235 372 376 178 10 chr3 85276421 85276735 -74323048 + LTR78 LTR ERV1 170 536 -768 4 1235 306 0 0 0 chr3 85276969 85277003 -74322780 + (TG)n Simple_repeat Simple_repeat 1 34 0 4 1235 329 376 44 39 chr3 85277015 85277195 -74322588 + LTR78 LTR ERV1 874 1054 -250 4 1235 187 116 56 42 chr3 85277570 85277642 -74322141 + A-rich Low_complexity Low_complexity 3 75 0 4 1235 1039 241 52 137 chr3 85277644 85278009 -74321774 - MTE2b LTR MaLR -41 338 5 4 1235 715 286 32 5 chr3 85278206 85278424 -74321359 + B4 SINE B4 2 225 -67 4 1235 518 272 12 42 chr3 85278428 85278593 -74321190 + RSINE1 SINE B4 4 163 -2 4 1235 1948 165 34 40 chr3 85278767 85279145 -74320638 - ORR1C1 LTR MaLR -2 376 1 4 1235 266 295 90 15 chr3 85280141 85280275 -74319508 + MIRb SINE MIR 110 253 -15 4 1235 610 236 13 15 chr3 85280666 85281204 -74318579 + (CA)n Simple_repeat Simple_repeat 1 536 0 4 1235 326 190 0 0 chr3 85281204 85281262 -74318521 + HAL1-3A_ME LINE L1 1975 2032 -826 4 1235 486 0 0 0 chr3 85281537 85281591 -74318192 + (TTCC)n Simple_repeat Simple_repeat 4 57 0 4 1235 272 310 0 0 chr3 85281635 85281706 -74318077 + ID4 SINE ID 3 73 -10 4 1235 411 160 0 0 chr3 85281707 85281782 -74318001 + (TGGA)n Simple_repeat Simple_repeat 4 78 0 4 1235 26 30 0 0 chr3 85282304 85282337 -74317446 + AT_rich Low_complexity Low_complexity 1 33 0 4 1235 840 200 0 0 chr3 85283632 85283812 -74315971 + (TG)n Simple_repeat Simple_repeat 1 180 0 4 1235 251 273 0 61 chr3 85283963 85284045 -74315738 - L2a LINE L2 -12 3414 3338 4 1235 294 356 17 17 chr3 85284112 85284229 -74315554 - MIR SINE MIR -116 146 30 4 1235 244 327 66 13 chr3 85284253 85284405 -74315378 - HAL1b LINE L1 -755 1254 1095 4 1235 409 328 127 40 chr3 85284431 85284699 -74315084 - HAL1b LINE L1 -1083 926 624 4 1235 1062 212 0 5 chr3 85284699 85284884 -74314899 - B3A SINE B2 -14 184 1 4 1235 409 328 127 40 chr3 85284884 85285041 -74314742 - HAL1b LINE L1 -1386 623 465 4 1235 1422 119 102 18 chr3 85285403 85285686 -74314097 - BGLII_A LTR ERVK 0 445 139 4 1235 521 297 51 109 chr3 85285686 85286192 -74313591 - L1MB5 LINE L1 -187 5987 5511 4 1235 424 304 60 82 chr3 85286469 85286923 -74312860 - MLT1D LTR MaLR -8 497 54 4 1235 246 293 29 39 chr3 85287611 85287714 -74312069 + MTEa LTR MaLR 278 379 0 4 1235 764 291 47 33 chr3 85287970 85288244 -74311539 + MER46C DNA MER2_type 59 336 -2 4 1235 330 256 211 0 chr3 85290038 85290128 -74309655 + RSINE1 SINE B4 3 111 -54 4 1235 419 263 8 17 chr3 85290427 85290547 -74309236 + MTEa LTR MaLR 244 362 -17 4 1235 234 287 106 0 chr3 85290966 85291060 -74308723 + MTEa LTR MaLR 262 365 -14 4 1235 1260 21 0 14 chr3 85291085 85291233 -74308550 + B1_Mus2 SINE Alu 1 146 -1 4 1235 379 200 28 33 chr3 85291872 85292053 -74307730 + (TG)n Simple_repeat Simple_repeat 1 180 0 4 1235 236 242 11 0 chr3 85292067 85292162 -74307621 + (TG)n Simple_repeat Simple_repeat 1 96 0 4 1235 445 248 6 6 chr3 85292234 85292396 -74307387 + (TG)n Simple_repeat Simple_repeat 1 162 0 4 1235 236 236 0 0 chr3 85294182 85294237 -74305546 + L2a LINE L2 3336 3390 -36 4 1235 901 293 41 33 chr3 85294775 85295167 -74304616 - Charlie2a DNA MER1_type -659 2202 1808 4 1235 258 300 0 0 chr3 85295175 85295235 -74304548 + ID4 SINE ID 7 66 -17 4 1235 315 0 0 0 chr3 85295237 85295272 -74304511 + (CA)n Simple_repeat Simple_repeat 2 36 0 4 1235 511 135 21 0 chr3 85295297 85295393 -74304390 + (TA)n Simple_repeat Simple_repeat 1 98 0 4 1235 253 222 329 5 chr3 85295423 85295645 -74304138 - Charlie2a DNA MER1_type -1047 1814 1521 4 1235 416 297 89 47 chr3 85295738 85295996 -74303787 - Charlie2a DNA MER1_type -2558 303 35 4 1235 597 28 0 0 chr3 85296005 85296076 -74303707 + (TC)n Simple_repeat Simple_repeat 2 72 0 4 1235 704 289 82 67 chr3 85297384 85297714 -74302069 + LTR16E1 LTR ERVL 201 535 -3 4 1235 189 0 0 0 chr3 85298048 85298069 -74301714 + (T)n Simple_repeat Simple_repeat 1 21 0 4 1235 487 296 119 36 chr3 85298769 85298937 -74300846 + B3A SINE B2 1 182 -16 4 1235 292 312 109 21 chr3 85300655 85300848 -74298935 - MLT1K LTR MaLR -33 562 353 4 1235 742 157 265 0 chr3 85301545 85301711 -74298072 + B3 SINE B2 1 210 -6 4 1235 22 0 0 0 chr3 85301713 85301735 -74298048 + AT_rich Low_complexity Low_complexity 1 22 0 4 1235 212 381 20 86 chr3 85304026 85304178 -74295605 + L2b LINE L2 3219 3360 -15 4 1235 298 292 92 87 chr3 85304245 85304417 -74295366 + MIRc SINE MIR 5 168 -100 4 1235 267 271 0 14 chr3 85304457 85304528 -74295255 + MER3 DNA MER1_type 1 70 -139 4 1235 604 260 8 0 chr3 85304635 85304762 -74295021 + B1_Mur3 SINE Alu 1 128 -21 4 1235 1151 112 0 6 chr3 85304780 85304960 -74294823 + (GAGAA)n Simple_repeat Simple_repeat 1 179 0 4 1235 781 180 0 12 chr3 85304964 85305133 -74294650 + GA-rich Low_complexity Low_complexity 1 167 0 4 1235 216 0 0 0 chr3 85305503 85305527 -74294256 + (TA)n Simple_repeat Simple_repeat 1 24 0 4 1235 461 62 15 0 chr3 85305534 85305599 -74294184 + (TCC)n Simple_repeat Simple_repeat 2 67 0 4 1235 253 299 26 0 chr3 85305646 85305723 -74294060 - PB1D10 SINE Alu -27 90 12 4 1235 4330 123 126 55 chr3 85305726 85306555 -74293228 - RMER17D LTR ERVK -2 887 1 4 1235 219 69 0 0 chr3 85306619 85306648 -74293135 + (CCA)n Simple_repeat Simple_repeat 1 29 0 4 1235 206 64 39 78 chr3 85307078 85307129 -74292654 + (TTCA)n Simple_repeat Simple_repeat 2 50 0 4 1235 348 245 173 20 chr3 85307576 85307726 -74292057 - B4A SINE B4 -67 225 53 4 1235 180 0 0 0 chr3 85308948 85308968 -74290815 + (CCCCAG)n Simple_repeat Simple_repeat 3 22 0 4 1235 826 54 0 0 chr3 85309487 85309598 -74290185 + B1_Mus1 SINE Alu 1 111 -37 4 1235 285 281 30 52 chr3 85309533 85309668 -74290115 + RLTR25A LTR ERVK 522 653 -450 4 1235 425 248 0 9 chr3 85310667 85310773 -74289010 + PB1D10 SINE Alu 5 109 -8 4 1235 256 290 29 14 chr3 85310789 85310859 -74288924 + ID4_ SINE ID 3 73 -10 4 1235 342 0 0 0 chr3 85311012 85311050 -74288733 + (TCTA)n Simple_repeat Simple_repeat 2 39 0 4 1235 5444 79 31 12 chr3 85311054 85311833 -74287950 - Lx3B LINE L1 -19 6954 6161 4 1235 650 247 69 35 chr3 85312486 85312717 -74287066 + MER2 DNA MER2_type 1 239 -106 4 1235 213 39 0 0 chr3 85312717 85312743 -74287040 + (TG)n Simple_repeat Simple_repeat 1 26 0 5 1235 351 0 0 0 chr3 85312987 85313026 -74286757 + (A)n Simple_repeat Simple_repeat 1 39 0 5 1235 227 279 0 0 chr3 85313555 85313616 -74286167 + ID4_ SINE ID 8 68 -15 5 1235 368 229 6 12 chr3 85313628 85313794 -74285989 + GA-rich Low_complexity Low_complexity 1 164 0 5 1235 311 279 48 0 chr3 85314023 85314127 -74285656 + B1F1 SINE Alu 35 143 -6 5 1235 519 133 0 28 chr3 85314143 85314251 -74285532 + GA-rich Low_complexity Low_complexity 2 106 0 5 1235 2208 211 54 39 chr3 85314858 85315429 -74284354 + RLTR31A_Mm LTR ERVK 1 580 -4 5 1235 231 279 11 132 chr3 85315797 85315888 -74283895 - MER115 DNA Tip100 -491 202 123 5 1235 22 35 0 0 chr3 85315998 85316027 -74283756 + AT_rich Low_complexity Low_complexity 1 29 0 5 1235 2229 163 68 0 chr3 85316244 85316613 -74283170 + ORR1B1 LTR MaLR 1 394 0 5 1235 340 238 49 10 chr3 85316636 85316738 -74283045 - ORR1E LTR MaLR -235 124 19 5 1235 384 146 11 22 chr3 85317493 85317584 -74282199 + G-rich Low_complexity Low_complexity 2 91 0 5 1235 242 273 61 0 chr3 85317602 85317668 -74282115 + MER58C DNA MER1_type 145 214 -1 5 1235 318 346 36 67 chr3 85318016 85318211 -74281572 - MLT1H LTR MaLR -271 278 90 5 1235 235 190 17 17 chr3 85319190 85319249 -74280534 + MIRc SINE MIR 113 171 -97 5 1235 426 236 36 45 chr3 85319249 85319360 -74280423 + RSINE1 SINE B4 8 117 -48 5 1235 531 0 0 0 chr3 85319400 85319459 -74280324 + (TTCTC)n Simple_repeat Simple_repeat 5 63 0 5 1235 268 24 49 0 chr3 85319459 85319500 -74280283 + (CCCCCT)n Simple_repeat Simple_repeat 6 48 0 5 1235 273 75 0 0 chr3 85320391 85320431 -74279352 + (CAG)n Simple_repeat Simple_repeat 3 42 0 5 1235 286 229 78 60 chr3 85321229 85321345 -74278438 - MER5A1 DNA MER1_type -46 120 3 5 1235 418 310 56 7 chr3 85321495 85321638 -74278145 - RSINE1 SINE B4 -15 150 1 5 1235 513 0 0 0 chr3 85323154 85323211 -74276572 + (GGA)n Simple_repeat Simple_repeat 3 59 0 5 1235 368 268 41 55 chr3 85323403 85323456 -74276327 - MLT1C LTR MaLR -122 345 295 5 1235 575 182 368 6 chr3 85323456 85323622 -74276161 + URR1A DNA MER1_type 1 226 0 5 1235 368 268 41 55 chr3 85323622 85323714 -74276069 - MLT1C LTR MaLR -173 294 202 5 1235 380 255 0 0 chr3 85323716 85323810 -74275973 - B1_Mur3 SINE Alu -55 94 1 5 1235 455 298 21 28 chr3 85323810 85323954 -74275829 - MLT1C LTR MaLR -288 179 37 5 1235 657 280 68 58 chr3 85324159 85324451 -74275332 + MLT2B4 LTR ERVL 73 387 -169 5 1235 345 24 0 0 chr3 85324556 85324598 -74275185 + (TG)n Simple_repeat Simple_repeat 1 42 0 5 1235 535 316 49 37 chr3 85325034 85325280 -74274503 + MLT1A LTR MaLR 7 255 -119 5 1235 405 0 0 0 chr3 85325318 85325363 -74274420 + (TG)n Simple_repeat Simple_repeat 2 46 0 5 1235 257 300 107 8 chr3 85325423 85325544 -74274239 - L2 LINE L2 -853 2566 2434 5 1235 34 42 0 0 chr3 85326124 85326172 -74273611 + AT_rich Low_complexity Low_complexity 1 48 0 5 1235 360 0 0 0 chr3 85326390 85326430 -74273353 + (TG)n Simple_repeat Simple_repeat 1 40 0 5 1235 575 90 10 0 chr3 85326430 85326530 -74273253 + (GA)n Simple_repeat Simple_repeat 2 102 0 5 154 10944 121 80 23 chr3 85327071 85328926 -74270857 + ORR1A2-int LTR MaLR 2 1963 0 5 1236 2181 99 48 3 chr3 85328926 85329239 -74270544 + ORR1A2 LTR MaLR 1 327 0 5 1236 379 248 131 2 chr3 85329472 85329605 -74270178 + MLT1A LTR MaLR 367 529 -20 5 1236 372 342 0 53 chr3 85329822 85329992 -74269791 + MER74A LTR ERVL 143 303 -255 5 1236 459 309 12 56 chr3 85330667 85330828 -74268955 - RSINE1 SINE B4 0 165 12 5 1236 21 36 0 0 chr3 85330899 85330927 -74268856 + AT_rich Low_complexity Low_complexity 1 28 0 5 1236 975 214 19 24 chr3 85330998 85331209 -74268574 + B3 SINE B2 1 210 -6 5 1236 301 304 80 42 chr3 85331248 85331461 -74268322 - L1M5 LINE L1 -327 5797 5577 5 1236 315 0 0 0 chr3 85331794 85331829 -74267954 + (TC)n Simple_repeat Simple_repeat 1 35 0 5 1236 330 26 0 0 chr3 85331829 85331867 -74267916 + (CA)n Simple_repeat Simple_repeat 1 39 0 5 1236 228 311 0 47 chr3 85333686 85333750 -74266033 + ID4_ SINE ID 14 74 -9 5 1236 323 331 24 8 chr3 85333949 85334074 -74265709 - MLT1I LTR MaLR -279 132 6 5 1236 413 133 13 0 chr3 85334370 85334445 -74265338 + (GA)n Simple_repeat Simple_repeat 1 76 0 5 1236 401 320 131 39 chr3 85334960 85335676 -74264107 + L2a LINE L2 2591 3377 -49 5 1236 391 375 0 0 chr3 85336590 85336710 -74263073 - PB1 SINE Alu -7 120 1 5 1236 540 261 68 39 chr3 85336740 85336947 -74262836 + B4A SINE B4 2 214 -78 5 1236 1687 147 54 60 chr3 85337059 85337392 -74262391 - ORR1C2 LTR MaLR -53 331 1 5 1236 264 208 0 36 chr3 85337392 85337453 -74262330 + PB1 SINE Alu 69 148 -1 5 1236 296 250 48 102 chr3 85337819 85337966 -74261817 - L2a LINE L2 -4 3422 3284 5 1236 329 109 18 0 chr3 85338678 85338733 -74261050 + (TCC)n Simple_repeat Simple_repeat 1 56 0 5 1236 279 0 0 0 chr3 85339353 85339384 -74260399 + (GA)n Simple_repeat Simple_repeat 2 32 0 5 1236 198 0 0 0 chr3 85339615 85339637 -74260146 + (TC)n Simple_repeat Simple_repeat 2 23 0 5 1236 278 297 0 0 chr3 85340566 85340630 -74259153 + ID4 SINE ID 2 65 -18 5 1236 1865 143 227 0 chr3 85342243 85342586 -74257197 + MTC LTR MaLR 1 421 0 5 1236 5040 176 117 13 chr3 85342586 85343713 -74256070 + MTC-int LTR MaLR 1 1244 -14 5 1236 366 193 10 50 chr3 85343745 85343845 -74255938 + MTC LTR MaLR 18 110 -286 5 1236 9220 111 4 5 chr3 85343845 85345206 -74254577 - L1_Mus3 LINE L1 -700 5183 3825 5 1236 8287 73 5 9 chr3 85345195 85346627 -74253156 + L1_Mus3 LINE L1 5217 6633 -5 5 1236 228 184 0 0 chr3 85346639 85346688 -74253095 + A-rich Low_complexity Low_complexity 1 49 0 5 1236 1402 170 66 4 chr3 85346688 85346959 -74252824 + MTC LTR MaLR 68 355 -66 5 1236 253 118 39 0 chr3 85347369 85347420 -74252363 + CT-rich Low_complexity Low_complexity 1 53 0 5 1236 239 214 36 0 chr3 85347423 85347479 -74252304 - ID4_ SINE ID -13 70 13 5 1236 698 313 84 0 chr3 85347674 85347936 -74251847 + B4A SINE B4 7 290 -2 5 1236 218 200 0 22 chr3 85347937 85347983 -74251800 + (CA)n Simple_repeat Simple_repeat 2 46 0 5 1236 240 111 0 0 chr3 85347996 85348032 -74251751 + (CATATA)n Simple_repeat Simple_repeat 1 36 0 5 1236 339 85 0 0 chr3 85348036 85348083 -74251700 + (TATG)n Simple_repeat Simple_repeat 2 48 0 5 1236 293 125 0 0 chr3 85349380 85349428 -74250355 - MER5B DNA MER1_type -130 48 1 5 1236 882 238 0 16 chr3 85350009 85350193 -74249590 + B3A SINE B2 2 182 -16 5 1236 372 224 18 0 chr3 85350193 85350358 -74249425 + (CA)n Simple_repeat Simple_repeat 1 168 0 5 1236 249 108 0 0 chr3 85350369 85350406 -74249377 + (CA)n Simple_repeat Simple_repeat 1 37 0 5 1236 1236 89 22 27 chr3 85350571 85350755 -74249028 + B2_Mm2 SINE B2 5 187 -8 5 1236 457 238 112 32 chr3 85351143 85351330 -74248453 + LTR81B LTR ERV1? 76 277 -1116 5 1236 1998 131 81 53 chr3 85351572 85351967 -74247816 - Lx LINE L1 -7 6647 6242 5 1236 562 219 92 59 chr3 85352495 85352733 -74247050 + MLT1C LTR MaLR 1 246 -221 5 1236 298 274 24 0 chr3 85353072 85353156 -74246627 + MLT1C LTR MaLR 265 350 -117 5 1236 1113 180 268 33 chr3 85353189 85353488 -74246295 + ORR1D1 LTR MaLR 4 372 -2 5 1236 393 330 66 63 chr3 85356075 85356392 -74243391 + ORR1E LTR MaLR 6 323 -36 5 1236 26 30 0 0 chr3 85356954 85356987 -74242796 + AT_rich Low_complexity Low_complexity 1 33 0 5 1236 240 29 0 28 chr3 85358171 85358207 -74241576 + ORR1C2 LTR MaLR 1 35 -339 5 1236 793 210 66 5 chr3 85358215 85358411 -74241372 + ORR1C2 LTR MaLR 177 384 0 5 1236 952 153 48 27 chr3 85358416 85358604 -74241179 - MTC LTR MaLR -227 194 3 5 1236 789 317 58 12 chr3 85359100 85359442 -74240341 + MLT1A0 LTR MaLR 1 358 -7 5 1236 415 342 41 20 chr3 85359536 85359781 -74240002 - MIR SINE MIR 0 262 13 5 1236 864 244 39 94 chr3 85359869 85360177 -74239606 - B4A SINE B4 0 292 2 5 1236 3244 52 0 12 chr3 85360258 85360663 -74239120 + MTB LTR MaLR 1 400 0 5 1236 1160 99 93 0 chr3 85360875 85361047 -74238736 - B2_Mm2 SINE B2 -6 189 2 5 1236 26 0 0 0 chr3 85361601 85361627 -74238156 + AT_rich Low_complexity Low_complexity 1 26 0 5 1236 329 299 0 0 chr3 85361689 85361766 -74238017 + ID_B1 SINE B4 81 157 -67 5 1236 366 314 10 58 chr3 85361802 85362008 -74237775 + HAL1 LINE L1 2078 2273 -234 5 1236 1027 131 23 0 chr3 85362100 85362276 -74237507 + URR1A DNA MER1_type 45 224 -2 5 1236 1174 209 127 45 chr3 85362779 85363250 -74236533 - RMER4B LTR ERVK -9 457 17 5 1236 351 179 62 9 chr3 85363388 85363501 -74236282 + L1MEf LINE L1 1091 1209 -5191 5 1236 488 282 0 9 chr3 85363514 85363625 -74236158 + PB1D10 SINE Alu 1 110 -7 5 1236 587 316 99 45 chr3 85363662 85364155 -74235628 + L1MEf LINE L1 1302 1821 -4594 5 1236 706 322 114 9 chr3 85364478 85365032 -74234751 + L1MEf LINE L1 4250 4861 -1458 5 1236 466 255 19 9 chr3 85365149 85365256 -74234527 - ID_B1 SINE B4 -13 211 104 5 1236 207 321 49 0 chr3 85365523 85365604 -74234179 - L2 LINE L2 -940 2479 2395 5 1236 937 199 108 121 chr3 85366743 85367115 -74232668 + ORR1D1 LTR MaLR 6 372 -2 5 1236 294 270 27 0 chr3 85367138 85367212 -74232571 + PB1 SINE Alu 48 123 -4 5 1236 418 267 0 17 chr3 85367231 85367349 -74232434 + PB1D10 SINE Alu 1 116 -1 5 1236 319 339 130 6 chr3 85367355 85367524 -74232259 + B3A SINE B2 1 190 -8 5 1236 21 71 0 0 chr3 85367645 85367687 -74232096 + AT_rich Low_complexity Low_complexity 1 42 0 5 1236 393 81 0 0 chr3 85367705 85367767 -74232016 + (TC)n Simple_repeat Simple_repeat 1 62 0 5 1236 432 0 0 0 chr3 85367767 85367815 -74231968 + (TG)n Simple_repeat Simple_repeat 1 48 0 5 1236 248 293 83 0 chr3 85369290 85369379 -74230404 + MER45A DNA Tip100 68 178 0 5 1236 696 119 0 0 chr3 85370552 85370661 -74229122 + (GA)n Simple_repeat Simple_repeat 1 109 0 5 1236 23 33 0 0 chr3 85370704 85370734 -74229049 + AT_rich Low_complexity Low_complexity 1 30 0 5 1236 493 297 185 25 chr3 85372853 85373102 -74226681 - B4A SINE B4 0 292 4 5 1236 324 0 0 0 chr3 85373264 85373300 -74226483 + (TG)n Simple_repeat Simple_repeat 2 37 0 6 1236 21 0 0 0 chr3 85375920 85375941 -74223842 + AT_rich Low_complexity Low_complexity 1 21 0 6 1236 718 237 19 0 chr3 85375974 85376130 -74223653 - B3A SINE B2 -38 160 2 6 1236 265 282 13 0 chr3 85377238 85377316 -74222467 - ID4 SINE ID -3 80 2 6 1236 23 54 0 0 chr3 85379662 85379699 -74220084 + AT_rich Low_complexity Low_complexity 1 37 0 6 1236 222 347 64 45 chr3 85380116 85380318 -74219465 - L2c LINE L2 0 3387 3182 6 1236 443 90 0 0 chr3 85381346 85381413 -74218370 + L1_Mus2 LINE L1 6497 6563 -3 6 1236 317 98 0 56 chr3 85382501 85382555 -74217228 + HAL1-3A_ME LINE L1 1975 2025 -833 6 1236 27 49 0 0 chr3 85382711 85382752 -74217031 + AT_rich Low_complexity Low_complexity 1 41 0 6 1236 553 317 33 40 chr3 85382900 85383176 -74216607 + L1ME4a LINE L1 5621 5894 -230 6 1236 328 313 75 0 chr3 85383183 85383330 -74216453 + MIR SINE MIR 92 249 -13 6 1236 1665 191 144 3 chr3 85384132 85384500 -74215283 + MTC LTR MaLR 2 421 0 6 1236 242 167 13 40 chr3 85385084 85385159 -74214624 + (CAAA)n Simple_repeat Simple_repeat 1 73 0 6 1236 485 303 156 45 chr3 85385168 85385680 -74214103 + HAL1 LINE L1 1107 1675 -832 6 1236 261 0 0 0 chr3 85386066 85386095 -74213688 + (CA)n Simple_repeat Simple_repeat 2 30 0 6 1236 473 280 58 96 chr3 85386582 85386894 -74212889 - LTR83 LTR ERVL -477 303 4 6 1236 329 281 52 45 chr3 85386901 85387035 -74212748 + HAL1 LINE L1 2326 2460 -47 6 1236 345 272 121 23 chr3 85387272 85387445 -74212338 - L1MEe LINE L1 -4533 321 132 6 1236 224 226 0 0 chr3 85387967 85388020 -74211763 - MIR SINE MIR -65 197 145 6 1236 243 272 23 3 chr3 85388031 85388105 -74211678 - MIR SINE MIR -184 84 9 6 1236 189 147 0 0 chr3 85390536 85390570 -74209213 + (TATG)n Simple_repeat Simple_repeat 3 36 0 6 1236 769 313 112 36 chr3 85390597 85391071 -74208712 - Tigger15a DNA TcMar -86 629 120 6 1236 746 284 96 75 chr3 85391230 85391752 -74208031 - MT2A LTR ERVL 0 533 1 6 1236 216 111 0 0 chr3 85391814 85391850 -74207933 + (TG)n Simple_repeat Simple_repeat 2 37 0 6 1236 417 302 108 34 chr3 85392148 85392501 -74207282 - L1MEd LINE L1 -5050 1069 691 6 1236 415 305 99 55 chr3 85395502 85395703 -74204080 - B3A SINE B2 -5 211 2 6 1236 182 128 26 0 chr3 85395752 85395791 -74203992 + (GGGTG)n Simple_repeat Simple_repeat 2 41 0 6 1236 414 286 143 29 chr3 85396307 85396552 -74203231 - L1MC4 LINE L1 -150 7892 7620 6 1236 270 236 89 59 chr3 85397918 85398053 -74201730 - MIRb SINE MIR -88 180 42 6 1236 29 0 0 0 chr3 85398319 85398348 -74201435 + AT_rich Low_complexity Low_complexity 1 29 0 6 1236 1700 21 0 0 chr3 85399567 85399754 -74200029 - B2_Mm1a SINE B2 -6 187 1 6 1236 22 0 0 0 chr3 85400012 85400034 -74199749 + AT_rich Low_complexity Low_complexity 1 22 0 6 1236 594 330 98 31 chr3 85400096 85400277 -74199506 + LTR33A LTR ERVL 22 217 -303 6 1236 306 0 0 0 chr3 85400277 85400311 -74199472 + (GA)n Simple_repeat Simple_repeat 2 35 0 6 1236 594 330 98 31 chr3 85400311 85400580 -74199203 + LTR33A LTR ERVL 218 502 -18 6 1236 4134 15 51 0 chr3 85401137 85401606 -74198177 - MT2_Mm LTR ERVL 0 493 1 6 1236 615 281 74 0 chr3 85403649 85403852 -74195931 + Tigger14a DNA MER2_type 6 223 -101 6 1236 381 242 11 11 chr3 85406853 85406945 -74192838 + MER53 DNA hAT 100 191 -2 6 1236 455 330 40 11 chr3 85407013 85407188 -74192595 + MER5A DNA MER1_type 6 185 -4 6 1236 1342 182 0 22 chr3 85407448 85407678 -74192105 - URR1B DNA MER1_type 0 225 1 6 1236 377 340 14 28 chr3 85408553 85408768 -74191015 - LTR79 LTR ERVL -29 498 287 6 1236 226 151 0 161 chr3 85409453 85409540 -74190243 + L1MA5 LINE L1 6203 6275 -25 6 1236 554 240 0 15 chr3 85409544 85409675 -74190108 + B1_Mur1 SINE Alu 19 147 -2 6 1236 395 203 54 0 chr3 85409774 85409848 -74189935 + ID4_ SINE ID 2 79 -4 6 1236 336 221 44 0 chr3 85411984 85412052 -74187731 + ID4 SINE ID 9 79 -4 6 1236 417 236 34 0 chr3 85413935 85414024 -74185759 + B1F SINE Alu 52 143 -6 6 1236 244 286 48 86 chr3 85414050 85414318 -74185465 - L2 LINE L2 -1353 2066 1809 6 1236 188 135 27 0 chr3 85414594 85414631 -74185152 + (CATATA)n Simple_repeat Simple_repeat 3 40 0 6 1236 424 282 72 35 chr3 85415572 85415818 -74183965 - MLT1H LTR MaLR -244 305 16 6 1236 786 244 181 40 chr3 85417778 85418081 -74181702 - ORR1D2 LTR MaLR -24 346 1 6 1236 3432 33 5 0 chr3 85418120 85418514 -74181269 - MTA_Mm LTR MaLR 0 396 1 6 1236 523 185 7 20 chr3 85418956 85419076 -74180707 + RMER19B LTR ERVK 2 118 -493 6 1236 297 254 74 66 chr3 85419090 85419212 -74180571 + MTEb LTR MaLR 256 378 -1 6 1236 32 26 0 0 chr3 85419342 85419381 -74180402 + AT_rich Low_complexity Low_complexity 1 39 0 6 1236 7135 74 22 3 chr3 85419407 85420372 -74179411 - Lx3_Mus LINE L1 0 7009 6027 6 1236 413 256 116 26 chr3 85421779 85421810 -74177973 - L1MC2 LINE L1 -149 6195 6164 6 1236 2632 40 64 9 chr3 85421810 85422138 -74177645 - ORR1A1 LTR MaLR 0 346 1 6 1236 413 256 116 26 chr3 85422138 85422295 -74177488 - L1MC2 LINE L1 -181 6163 5990 6 1236 29 47 0 0 chr3 85422397 85422440 -74177343 + AT_rich Low_complexity Low_complexity 1 43 0 6 1236 263 149 21 0 chr3 85423575 85423622 -74176161 - ID_B1 SINE B4 -8 216 169 6 1236 1061 118 209 0 chr3 85424238 85424425 -74175358 - URR1A DNA MER1_type 0 226 1 6 1236 345 47 0 0 chr3 85424473 85424516 -74175267 + (T)n Simple_repeat Simple_repeat 1 43 0 6 1236 1196 68 0 0 chr3 85424516 85424663 -74175120 - B1_Mus2 SINE Alu 0 147 1 6 1236 3184 6 37 0 chr3 85426203 85426557 -74173226 - IAPLTR1_Mm LTR ERVK 0 367 1 6 1236 56865 23 14 2 chr3 85426557 85432959 -74166824 - IAPEz-int LTR ERVK 0 6481 8 6 1236 3184 6 37 0 chr3 85432959 85433313 -74166470 - IAPLTR1_Mm LTR ERVK 0 367 1 6 1236 287 317 40 46 chr3 85436023 85436198 -74163585 - Tigger12c DNA MER2_type -290 444 271 6 1236 1216 28 0 7 chr3 85437346 85437488 -74162295 + B1_Mm SINE Alu 1 141 -6 6 1236 278 149 79 22 chr3 85437497 85437586 -74162197 - Tigger7 DNA MER2_type -95 2396 2303 6 1236 474 88 0 0 chr3 85438576 85438644 -74161139 + (TG)n Simple_repeat Simple_repeat 2 69 0 6 1236 308 301 0 0 chr3 85439690 85439773 -74160010 + B3A SINE B2 1 83 -115 6 1236 180 0 0 0 chr3 85439794 85439814 -74159969 + (TG)n Simple_repeat Simple_repeat 2 21 0 6 1236 478 304 106 59 chr3 85441660 85441915 -74157868 - MLT1A LTR MaLR -65 309 43 6 1236 673 279 93 19 chr3 85442763 85443022 -74156761 + B4A SINE B4 1 278 -14 6 1236 799 145 49 17 chr3 85443046 85443253 -74156530 - ORR1C2 LTR MaLR 0 374 164 6 1236 237 236 0 0 chr3 85443776 85443831 -74155952 + GA-rich Low_complexity Low_complexity 3 57 0 6 1236 184 349 34 12 chr3 85444285 85444398 -74155385 - MIRm SINE MIR -19 189 79 6 1236 1058 100 0 22 chr3 85444532 85444716 -74155067 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 6 1236 283 281 103 26 chr3 85445382 85445499 -74154284 - MLT1A1 LTR MaLR -281 127 2 6 1236 187 195 23 47 chr3 85445718 85445761 -74154022 + L3 LINE CR1 4341 4382 -107 6 1236 927 298 81 20 chr3 85446936 85447231 -74152552 + MER2 DNA MER2_type 25 337 -8 6 1236 875 314 99 3 chr3 85447497 85447820 -74151963 + MLT1A0 LTR MaLR 5 358 -7 6 1236 289 274 167 0 chr3 85450348 85450450 -74149333 + ID_B1 SINE B4 93 211 -13 6 1236 268 244 193 34 chr3 85450450 85450467 -74149316 + B1F1 SINE Alu 12 149 0 6 1236 309 283 35 78 chr3 85450717 85450832 -74148951 - L1M2 LINE L1 -2763 4082 3973 6 1236 330 262 37 9 chr3 85450832 85450940 -74148843 - PB1D10 SINE Alu -6 111 1 6 1236 268 228 191 79 chr3 85450947 85451224 -74148559 - L1M2 LINE L1 -3657 3188 2881 6 1236 847 179 7 0 chr3 85451225 85451365 -74148418 - B1_Mur4 SINE Alu -1 149 9 6 1236 379 329 112 9 chr3 85451607 85451840 -74147943 - L1M2 LINE L1 -4224 2625 2369 6 1236 1329 255 112 24 chr3 85452031 85452529 -74147254 - Lx9 LINE L1 -223 7421 6880 6 1236 415 231 11 0 chr3 85452535 85452626 -74147157 - B1F2 SINE Alu -51 98 7 6 1236 333 224 15 0 chr3 85452568 85452635 -74147148 - B4A SINE B4 -142 150 83 6 1236 4232 106 78 38 chr3 85454074 85454822 -74144961 - RLTR13C2 LTR ERVK 0 806 1 6 1236 433 261 322 35 chr3 85455365 85455538 -74144245 - B4A SINE B4 -56 236 14 6 1236 488 93 13 0 chr3 85458437 85458512 -74141271 + (GA)n Simple_repeat Simple_repeat 2 77 0 6 1237 180 0 0 0 chr3 85461576 85461596 -74138187 + (A)n Simple_repeat Simple_repeat 1 20 0 6 1237 384 306 36 9 chr3 85465396 85465508 -74134275 + PB1 SINE Alu 1 115 -12 6 1237 257 302 187 9 chr3 85466693 85466800 -74132983 + MIR SINE MIR 70 195 -67 6 1237 207 162 0 0 chr3 85467530 85467567 -74132216 + CT-rich Low_complexity Low_complexity 3 39 0 6 1237 246 247 24 61 chr3 85468222 85468304 -74131479 + ID4 SINE ID 1 79 -4 6 1237 496 254 49 83 chr3 85471997 85472267 -74127516 + ORR1E LTR MaLR 33 292 -67 6 1237 273 322 259 0 chr3 85472775 85472949 -74126834 - MIR SINE MIR -13 249 31 6 1237 342 0 0 0 chr3 85472974 85473012 -74126771 + (TG)n Simple_repeat Simple_repeat 2 39 0 6 1237 417 304 25 15 chr3 85473085 85473299 -74126484 - L1MC4a LINE L1 -2001 5881 5665 6 1237 374 292 157 38 chr3 85473823 85474058 -74125725 + RMER15 LTR ERVL 275 537 -38 6 1237 1218 61 0 0 chr3 85475776 85475923 -74123860 + B1_Mus2 SINE Alu 1 147 0 6 1237 250 235 38 19 chr3 85479506 85479594 -74120189 + MIR SINE MIR 85 169 -99 6 1237 258 346 56 0 chr3 85482790 85482897 -74116886 - B1F1 SINE Alu -36 113 1 6 1237 420 111 0 0 chr3 85482989 85483052 -74116731 + (TG)n Simple_repeat Simple_repeat 1 63 0 7 1237 735 12 0 0 chr3 85483134 85483218 -74116565 + (GAAA)n Simple_repeat Simple_repeat 2 85 0 7 1237 316 198 87 29 chr3 85483227 85483331 -74116452 + Lx8 LINE L1 7360 7469 -4 7 1237 226 367 0 11 chr3 85484293 85484384 -74115399 - MIRc SINE MIR -10 258 169 7 1237 771 11 0 0 chr3 85484980 85485068 -74114715 + (GA)n Simple_repeat Simple_repeat 1 88 0 7 1237 1032 120 169 0 chr3 85485598 85485782 -74114001 - URR1A DNA MER1_type -9 217 3 7 1237 367 220 118 20 chr3 85485782 85485882 -74113901 - MER5A DNA MER1_type -33 156 47 7 1237 200 163 0 44 chr3 85485927 85485972 -74113811 + C-rich Low_complexity Low_complexity 6 48 0 7 1237 780 231 243 21 chr3 85485972 85486211 -74113572 - B4 SINE B4 0 292 1 7 1237 193 28 0 100 chr3 85486863 85486903 -74112880 + (TGGGGG)n Simple_repeat Simple_repeat 5 40 0 7 1237 2449 120 49 0 chr3 85488454 85488822 -74110961 + ORR1B1 LTR MaLR 1 386 -8 7 1237 280 194 161 0 chr3 85489019 85489112 -74110671 - L1M4 LINE L1 -844 5302 5195 7 1237 534 293 13 32 chr3 85489176 85489331 -74110452 - RSINE1 SINE B4 -8 157 6 7 1237 379 317 19 0 chr3 85489344 85489448 -74110335 - PB1D10 SINE Alu -1 116 11 7 1237 360 0 0 0 chr3 85489511 85489551 -74110232 + (TTTA)n Simple_repeat Simple_repeat 2 41 0 7 1237 1206 49 0 0 chr3 85489551 85489695 -74110088 - B1_Mm SINE Alu -2 145 2 7 1237 347 202 253 0 chr3 85489708 85489866 -74109917 - L1M4 LINE L1 -1007 5139 4942 7 1237 411 73 0 0 chr3 85489897 85489952 -74109831 + (CA)n Simple_repeat Simple_repeat 2 56 0 7 1237 1076 263 84 37 chr3 85489964 85490286 -74109497 - L1M4 LINE L1 -1447 4699 4347 7 1237 725 245 96 90 chr3 85490286 85490362 -74109421 + MTE2a LTR MaLR 1 75 -304 7 1237 915 115 0 0 chr3 85490362 85490501 -74109282 + (TG)n Simple_repeat Simple_repeat 2 140 0 7 1237 725 245 96 90 chr3 85490501 85490801 -74108982 + MTE2a LTR MaLR 76 379 0 7 1237 1076 263 84 37 chr3 85490801 85490967 -74108816 - L1M4 LINE L1 -1800 4346 4188 7 1237 377 279 34 73 chr3 85491101 85491279 -74108504 - L1MB1 LINE L1 -154 6014 5844 7 1237 320 307 86 24 chr3 85491303 85491513 -74108270 - L1M4 LINE L1 -3229 2917 2695 7 1237 246 297 67 52 chr3 85491573 85491594 -74108189 - B4A SINE B4 -66 226 91 7 1237 486 270 9 18 chr3 85491594 85491707 -74108076 - PB1D10 SINE Alu 0 117 6 7 1237 557 208 24 0 chr3 85491714 85491882 -74107901 + (TA)n Simple_repeat Simple_repeat 1 172 0 7 1237 198 245 20 0 chr3 85492887 85492936 -74106847 - L2c LINE L2 -2 3385 3336 7 1237 518 296 48 51 chr3 85493319 85493611 -74106172 - B4A SINE B4 -1 291 1 7 1237 192 179 0 0 chr3 85493936 85493975 -74105808 + CT-rich Low_complexity Low_complexity 1 39 0 7 1237 4044 158 29 3 chr3 85494059 85494720 -74105063 + Lx5 LINE L1 6359 7036 -14 7 1237 237 65 0 0 chr3 85494720 85494751 -74105032 + (TTAA)n Simple_repeat Simple_repeat 3 33 0 7 1237 294 29 0 0 chr3 85495522 85495557 -74104226 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 7 1237 2971 253 63 23 chr3 85495566 85496360 -74103423 + RCHARR1 DNA MER1_type 80 905 -69 7 1237 458 297 179 44 chr3 85496368 85496671 -74103112 + ORR1E LTR MaLR 13 353 -6 7 1237 308 355 73 18 chr3 85496927 85497036 -74102747 - PB1D10 SINE Alu 0 117 3 7 1237 265 211 35 17 chr3 85498482 85498540 -74101243 + MER112 DNA MER1_type 102 160 -101 7 1237 219 154 0 0 chr3 85498841 85498880 -74100903 + (TTA)n Simple_repeat Simple_repeat 2 40 0 7 1237 694 233 12 35 chr3 85500025 85500194 -74099589 + RSINE1 SINE B4 1 165 0 1 1237 291 136 0 0 chr3 85500228 85500287 -74099496 + (TCTG)n Simple_repeat Simple_repeat 4 62 0 2 1237 232 243 182 27 chr3 85500877 85500987 -74098796 + MIRb SINE MIR 24 150 -118 3 1237 279 271 92 66 chr3 85501740 85501873 -74097910 + B1F1 SINE Alu 1 123 -26 4 1237 510 244 98 6 chr3 85504007 85504188 -74095595 - L1M3 LINE L1 -764 5419 5218 5 1237 389 248 300 58 chr3 85504202 85504623 -74095160 - L1M3 LINE L1 -1018 5122 4601 5 1237 228 208 19 0 chr3 85504725 85504778 -74095005 - L1_Mur1 LINE L1 -1301 4585 4532 6 1237 434 260 95 14 chr3 85504822 85504970 -74094813 - RSINE1 SINE B4 0 165 6 7 1237 201 331 130 36 chr3 85505003 85505141 -74094642 - MER91A DNA Tip100 -38 158 8 8 1237 240 279 0 14 chr3 85505495 85505564 -74094219 + L2a LINE L2 3359 3426 0 9 1237 228 244 0 0 chr3 85506048 85506138 -74093645 + (CACAA)n Simple_repeat Simple_repeat 5 94 0 1 1237 277 309 18 18 chr3 85507737 85507849 -74091934 + LTR79 LTR ERVL 380 491 -36 1 1237 249 211 153 14 chr3 85508328 85508400 -74091383 + ORR1E LTR MaLR 4 85 -274 1 1237 855 204 88 0 chr3 85508562 85508743 -74091040 - B3 SINE B2 -19 197 1 1 1237 201 356 30 0 chr3 85511850 85511951 -74087832 + MIR SINE MIR 43 146 -62 1 1237 236 297 40 0 chr3 85512110 85512184 -74087599 - ID4 SINE ID -3 80 4 1 1237 496 210 30 0 chr3 85512195 85512295 -74087488 - B1F SINE Alu -2 147 45 1 1237 1739 135 8 104 chr3 85513723 85514079 -74085704 - RLTRETN_Mm LTR ERVK 0 322 1 1 1237 284 48 24 0 chr3 85514419 85514461 -74085322 + (TAG)n Simple_repeat Simple_repeat 2 44 0 1 1237 847 232 110 18 chr3 85514708 85514980 -74084803 - MTE2a LTR MaLR -25 354 58 1 1237 867 260 55 46 chr3 85515960 85516287 -74083496 + MTE2b LTR MaLR 13 342 -37 2 1237 1645 144 90 0 chr3 85517986 85518298 -74081485 + RMER19A LTR ERVK 398 737 0 2 1237 369 267 75 7 chr3 85518639 85518786 -74080997 - MIRc SINE MIR -99 169 13 2 1237 453 62 0 0 chr3 85519354 85519419 -74080364 + (CA)n Simple_repeat Simple_repeat 2 66 0 2 1237 407 150 0 29 chr3 85519419 85519522 -74080261 + GA-rich Low_complexity Low_complexity 1 100 0 2 1237 248 239 105 74 chr3 85520145 85520240 -74079543 + MLT1I LTR MaLR 70 167 -244 2 1237 694 305 14 78 chr3 85521315 85521610 -74078173 - B4A SINE B4 -16 276 1 2 1237 285 29 0 0 chr3 85522530 85522564 -74077219 + (TTGG)n Simple_repeat Simple_repeat 2 35 0 2 1237 454 257 99 16 chr3 85522831 85523013 -74076770 + L1MA7 LINE L1 6063 6259 -32 2 1237 27 62 0 0 chr3 85524686 85524734 -74075049 + AT_rich Low_complexity Low_complexity 1 48 0 2 1237 270 0 0 0 chr3 85525134 85525164 -74074619 + (TG)n Simple_repeat Simple_repeat 1 30 0 3 1237 519 17 0 0 chr3 85525164 85525223 -74074560 + (GA)n Simple_repeat Simple_repeat 1 60 0 3 1237 236 174 0 0 chr3 85526218 85526264 -74073519 + (CA)n Simple_repeat Simple_repeat 2 47 0 3 1237 186 236 36 0 chr3 85526993 85527048 -74072735 - MIRc SINE MIR -26 242 186 3 1237 341 151 39 50 chr3 85527361 85527542 -74072241 + (TA)n Simple_repeat Simple_repeat 2 180 0 3 1237 517 208 115 27 chr3 85527737 85527885 -74071898 + RSINE1 SINE B4 4 164 -1 3 1237 624 12 35 0 chr3 85528435 85528520 -74071263 + (TAGA)n Simple_repeat Simple_repeat 2 89 0 3 1237 306 0 0 0 chr3 85529347 85529381 -74070402 + (TG)n Simple_repeat Simple_repeat 2 35 0 3 1237 608 277 69 62 chr3 85529898 85530187 -74069596 + B4A SINE B4 2 292 0 3 1237 210 118 0 0 chr3 85530239 85530273 -74069510 + (CA)n Simple_repeat Simple_repeat 1 34 0 3 1237 762 93 0 0 chr3 85530297 85530405 -74069378 + (TA)n Simple_repeat Simple_repeat 1 108 0 4 1237 1417 227 42 77 chr3 85532577 85532897 -74066886 - L1MC1 LINE L1 -414 5919 5599 4 1237 1032 216 33 14 chr3 85532897 85533108 -74066675 + B3 SINE B2 2 216 0 4 1237 1417 227 42 77 chr3 85533108 85533241 -74066542 - L1MC1 LINE L1 -735 5598 5482 4 1237 444 77 0 0 chr3 85533311 85533376 -74066407 + (CA)n Simple_repeat Simple_repeat 2 66 0 4 1237 21 0 0 0 chr3 85536836 85536857 -74062926 + AT_rich Low_complexity Low_complexity 1 21 0 4 1237 821 232 35 0 chr3 85536884 85537082 -74062701 + B3 SINE B2 1 205 -11 4 1237 260 303 158 0 chr3 85537111 85537187 -74062596 + PB1D10 SINE Alu 2 89 -28 4 1237 184 182 45 11 chr3 85537542 85537631 -74062152 + (TA)n Simple_repeat Simple_repeat 1 92 0 4 1237 749 193 7 7 chr3 85537709 85537845 -74061938 + B1_Mur1 SINE Alu 1 136 -13 4 1237 504 0 0 0 chr3 85537943 85537999 -74061784 + (TC)n Simple_repeat Simple_repeat 2 57 0 4 1237 430 203 0 16 chr3 85539544 85539669 -74060114 + CT-rich Low_complexity Low_complexity 4 126 0 5 1237 311 260 0 25 chr3 85539689 85539768 -74060015 - ID4 SINE ID -1 82 6 5 1237 337 279 76 17 chr3 85539812 85539941 -74059842 - ID_B1 SINE B4 -8 216 78 5 1237 314 311 11 0 chr3 85540056 85540147 -74059636 + ID_B1 SINE B4 83 170 -54 5 1237 299 300 70 0 chr3 85540063 85540163 -74059620 + PB1D10 SINE Alu 5 111 -6 5 1237 341 254 161 31 chr3 85540171 85540301 -74059482 + Lx8 LINE L1 6715 6861 -612 5 1237 1657 212 65 3 chr3 85540423 85540792 -74058991 - MTD LTR MaLR -2 417 26 5 1237 420 264 28 0 chr3 85541022 85541128 -74058655 - B1F SINE Alu 0 149 41 5 1237 630 342 29 25 chr3 85545728 85546004 -74053779 + B4A SINE B4 16 292 0 5 1237 207 170 0 0 chr3 85546008 85546055 -74053728 + (CA)n Simple_repeat Simple_repeat 1 47 0 5 1237 205 176 0 0 chr3 85546187 85546221 -74053562 + GA-rich Low_complexity Low_complexity 2 35 0 6 1237 434 282 27 47 chr3 85546637 85546786 -74052997 + RSINE1 SINE B4 3 148 -17 6 1237 233 135 19 0 chr3 85546822 85546874 -74052909 + (CAGA)n Simple_repeat Simple_repeat 4 56 0 6 1237 447 187 0 33 chr3 85548798 85549144 -74050639 + (CA)n Simple_repeat Simple_repeat 1 334 0 6 1237 1959 162 169 2 chr3 85549921 85550360 -74049423 - RMER4B LTR ERVK -57 528 17 6 1237 24 0 0 0 chr3 85550367 85550391 -74049392 + AT_rich Low_complexity Low_complexity 1 24 0 6 1237 25 31 0 0 chr3 85551709 85551741 -74048042 + AT_rich Low_complexity Low_complexity 1 32 0 6 1237 314 296 23 23 chr3 85552071 85552199 -74047584 + L1MC LINE L1 5695 5822 -2060 6 1237 324 150 38 0 chr3 85552211 85552291 -74047492 + (TA)n Simple_repeat Simple_repeat 2 84 0 6 1237 530 304 72 22 chr3 85552513 85552846 -74046937 + ORR1E LTR MaLR 4 379 0 6 1237 648 284 33 21 chr3 85552846 85553087 -74046696 + ORR1E-int LTR MaLR 1 244 -1336 6 1237 2799 281 137 16 chr3 85553086 85554128 -74045655 + ORR1E-int LTR MaLR 358 1528 -52 6 1237 543 294 10 63 chr3 85554128 85554335 -74045448 + ORR1E LTR MaLR 1 196 -163 6 1237 2735 51 0 0 chr3 85554368 85554704 -74045079 - L1Md_F2 LINE L1 0 6582 6247 7 1237 425 245 37 9 chr3 85554770 85554877 -74044906 + ORR1E LTR MaLR 265 374 -5 6 1237 2032 130 3 7 chr3 85554923 85555225 -74044558 + L1_Mur2 LINE L1 5533 5833 -44 7 1237 235 271 53 53 chr3 85555243 85555395 -74044388 + Lx LINE L1 6501 6652 -2 7 1237 254 254 32 0 chr3 85555591 85555654 -74044129 - MER2 DNA MER2_type -2 343 279 7 1237 640 205 108 6 chr3 85555666 85555833 -74043950 - MER2 DNA MER2_type -135 210 27 7 1237 362 289 67 0 chr3 85556219 85556309 -74043474 + PB1D10 SINE Alu 2 97 -20 7 1237 1017 205 29 24 chr3 85556557 85556767 -74043016 - B3 SINE B2 -5 211 1 7 1237 4277 55 0 8 chr3 85558100 85558631 -74041152 + L1Md_F2 LINE L1 6056 6582 0 7 1237 1064 268 13 37 chr3 85560711 85560991 -74038792 + B4A SINE B4 2 276 -16 7 1237 360 0 0 0 chr3 85560991 85561031 -74038752 + (TG)n Simple_repeat Simple_repeat 2 41 0 7 1237 378 107 0 0 chr3 85561031 85561086 -74038697 + (TA)n Simple_repeat Simple_repeat 1 56 0 7 1237 1064 268 13 37 chr3 85561086 85561102 -74038681 + B4A SINE B4 277 291 -1 7 1237 229 333 118 29 chr3 85561515 85561651 -74038132 - MIRb SINE MIR -9 259 112 8 1237 239 319 110 69 chr3 85561900 85562045 -74037738 + LTR16A LTR ERVL 4 154 -297 8 1237 8103 38 1 4 chr3 85563275 85564232 -74035551 - L1Md_F2 LINE L1 -12 6570 5617 8 1237 3828 43 19 39 chr3 85564768 85565253 -74034530 + MT2C_Mm LTR ERVL 1 475 0 8 1237 1410 226 85 34 chr3 85565305 85565657 -74034126 - ORR1D2 LTR MaLR 0 370 1 8 1237 237 132 0 0 chr3 85566194 85566232 -74033551 + (CA)n Simple_repeat Simple_repeat 1 38 0 8 1237 1195 263 20 39 chr3 85566371 85566727 -74033056 + MTE2a LTR MaLR 19 367 -12 8 1237 1628 207 69 10 chr3 85567315 85567705 -74032078 + MTD LTR MaLR 1 413 -6 8 1237 390 42 0 0 chr3 85569904 85569952 -74029831 + (TA)n Simple_repeat Simple_repeat 2 49 0 8 1237 234 248 104 52 chr3 85570222 85570337 -74029446 - Tigger13a DNA MER2_type -357 414 294 8 1237 290 253 0 35 chr3 85571254 85571340 -74028443 + RSINE1 SINE B4 3 85 -80 9 1237 327 25 0 0 chr3 85571363 85571403 -74028380 + (CA)n Simple_repeat Simple_repeat 2 41 0 9 1237 194 354 45 23 chr3 85571565 85571698 -74028085 - MIR SINE MIR -86 176 41 9 1237 408 236 0 0 chr3 85572128 85572217 -74027566 + L1MD LINE L1 5091 5179 -967 9 1237 573 256 0 22 chr3 85572244 85572380 -74027403 + ID_B1 SINE B4 82 214 -10 9 1237 702 35 0 0 chr3 85572380 85572465 -74027318 + (GAAA)n Simple_repeat Simple_repeat 2 86 0 9 1237 321 250 91 0 chr3 85572918 85573006 -74026777 + L1MD2 LINE L1 6247 6342 -17 9 1237 21 0 0 0 chr3 85573141 85573162 -74026621 + AT_rich Low_complexity Low_complexity 1 21 0 9 1237 35 0 0 0 chr3 85573229 85573264 -74026519 + AT_rich Low_complexity Low_complexity 1 35 0 9 1237 812 186 28 0 chr3 85573460 85573605 -74026178 - B1_Mur2 SINE Alu 0 149 1 9 1237 214 290 0 14 chr3 85573745 85573815 -74025968 + (CA)n Simple_repeat Simple_repeat 2 70 0 1 1237 205 203 54 68 chr3 85574808 85574882 -74024901 - MIR3 SINE MIR -135 73 1 1 1237 186 290 27 55 chr3 85576450 85576523 -74023260 - L2b LINE L2 -64 3311 3241 1 1237 351 0 0 0 chr3 85576686 85576725 -74023058 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 1237 400 283 30 0 chr3 85576851 85576965 -74022818 - PB1D10 SINE Alu -3 124 2 1 1237 392 320 6 45 chr3 85578489 85578665 -74021118 + MIRb SINE MIR 13 188 -80 1 1237 377 300 62 0 chr3 85579463 85579589 -74020194 + ID_B1 SINE B4 2 135 -89 1 1237 1051 129 12 0 chr3 85579589 85579759 -74020024 + B2_Mm1t SINE B2 1 172 -21 1 1237 27 0 0 0 chr3 85579759 85579786 -74019997 + AT_rich Low_complexity Low_complexity 1 27 0 1 1237 261 275 14 0 chr3 85579830 85579899 -74019884 + ID_B1 SINE B4 155 224 0 1 1237 402 74 0 0 chr3 85582047 85582101 -74017682 + (A)n Simple_repeat Simple_repeat 1 54 0 1 1237 978 260 51 40 chr3 85582496 85582772 -74017011 + B4 SINE B4 1 279 -13 1 1237 213 211 0 0 chr3 85582780 85582818 -74016965 + (CA)n Simple_repeat Simple_repeat 2 39 0 1 1237 229 316 25 12 chr3 85582862 85582942 -74016841 + ID_B1 SINE B4 136 216 -8 1 1237 501 301 120 30 chr3 85583088 85583321 -74016462 + B4A SINE B4 1 254 -38 1 1237 1453 87 8 65 chr3 85583321 85583625 -74016158 + L1Md_F2 LINE L1 6327 6582 0 1 1237 572 160 0 8 chr3 85584647 85584767 -74015016 + GA-rich Low_complexity Low_complexity 2 120 0 1 1237 1227 47 0 0 chr3 85585165 85585313 -74014470 + B1_Mus1 SINE Alu 1 148 0 1 1237 180 0 0 0 chr3 85585469 85585489 -74014294 + (TTTG)n Simple_repeat Simple_repeat 3 22 0 1 1237 6398 49 3 0 chr3 85586585 85587360 -74012423 + L1Md_F2 LINE L1 5806 6582 0 1 1237 1180 78 22 6 chr3 85587387 85587567 -74012216 - L1_Mus3 LINE L1 0 6638 6456 1 1237 525 245 38 19 chr3 85588143 85588301 -74011482 + RSINE1 SINE B4 5 165 0 1 1237 328 336 145 11 chr3 85588340 85588602 -74011181 + L1M5 LINE L1 4799 5095 -1051 1 1237 1113 273 48 39 chr3 85588612 85589127 -74010656 + L1M2 LINE L1 5265 5784 -513 1 1238 360 0 0 0 chr3 85590285 85590325 -74009458 + (CA)n Simple_repeat Simple_repeat 2 41 0 1 1238 532 84 14 0 chr3 85590886 85590957 -74008826 + L1_Mus2 LINE L1 6321 6392 -174 1 1238 296 281 0 22 chr3 85590950 85591041 -74008742 + L1MD3 LINE L1 7894 7982 -13 1 1238 214 283 0 21 chr3 85593001 85593048 -74006735 + B1F2 SINE Alu 1 46 -103 1 1238 725 189 42 0 chr3 85594735 85594878 -74004905 - B1_Mur4 SINE Alu -1 149 1 1 1238 248 407 25 0 chr3 85595623 85595741 -74004042 - MLT1K LTR MaLR -326 269 149 1 1238 364 316 62 62 chr3 85595887 85596130 -74003653 + L4 LINE RTE 1140 1382 -647 1 1238 1363 196 165 32 chr3 85596222 85596592 -74003191 - MTD LTR MaLR 0 419 1 1 1238 1661 273 60 39 chr3 85597151 85597821 -74001962 + Lx9 LINE L1 6959 7642 -2 1 1238 4739 224 74 24 chr3 85597844 85599072 -74000711 - Lx9 LINE L1 -1 7643 6355 1 1238 330 214 44 11 chr3 85599108 85599187 -74000596 - L1M4c LINE L1 -896 5486 5404 1 1238 2214 149 24 31 chr3 85599187 85599568 -74000215 + ORR1C1 LTR MaLR 1 378 0 1 1238 22 0 0 0 chr3 85599599 85599621 -74000162 + AT_rich Low_complexity Low_complexity 1 22 0 1 1238 869 240 38 9 chr3 85599756 85599966 -73999817 + ID_B1 SINE B4 1 216 -8 1 1238 604 257 7 7 chr3 85600151 85600292 -73999491 + B3 SINE B2 1 141 -75 1 1238 251 197 0 57 chr3 85600327 85600397 -73999386 - Lx7 LINE L1 0 7696 7631 1 1238 275 245 88 0 chr3 85600439 85600541 -73999242 - L1M4c LINE L1 -5508 876 766 1 1238 788 276 161 90 chr3 85600527 85601352 -73998431 + L1MB7 LINE L1 5257 6140 -34 1 1238 728 281 83 0 chr3 85601970 85602162 -73997621 - B3 SINE B2 -7 209 2 1 1238 2058 252 120 17 chr3 85602490 85603313 -73996470 + L1MC LINE L1 2872 3779 -2367 1 1238 708 86 0 0 chr3 85603464 85603557 -73996226 + 4.5SRNA scRNA scRNA 1 93 -1 1 1238 1192 68 0 0 chr3 85603558 85603705 -73996078 + B1_Mus2 SINE Alu 1 147 0 1 1238 189 0 0 0 chr3 85603705 85603726 -73996057 + (A)n Simple_repeat Simple_repeat 1 21 0 1 1238 689 148 0 62 chr3 85603740 85603870 -73995913 + B1_Mus1 SINE Alu 15 136 -12 1 1238 26 30 0 0 chr3 85604736 85604769 -73995014 + AT_rich Low_complexity Low_complexity 1 33 0 1 1238 669 145 40 0 chr3 85604811 85604935 -73994848 + B3 SINE B2 88 216 0 1 1238 509 249 94 6 chr3 85605771 85605941 -73993842 - MIR SINE MIR -48 214 30 1 1238 920 244 24 9 chr3 85607645 85607856 -73991927 - B3 SINE B2 -2 214 1 1 1238 327 305 3 21 chr3 85607931 85608056 -73991727 - B1F SINE Alu 0 149 2 1 1238 284 297 0 0 chr3 85608132 85608196 -73991587 + G-rich Low_complexity Low_complexity 4 67 0 1 1238 827 260 63 73 chr3 85608197 85608512 -73991271 - MER31B LTR ERV1 -150 316 5 1 1238 23 0 0 0 chr3 85609207 85609230 -73990553 + AT_rich Low_complexity Low_complexity 1 23 0 1 1238 3481 168 5 21 chr3 85609355 85609937 -73989846 + Lx5 LINE L1 6183 6782 -268 1 1238 497 158 33 0 chr3 85609995 85610115 -73989668 + CT-rich Low_complexity Low_complexity 2 125 0 1 1238 204 111 0 0 chr3 85610132 85610168 -73989615 + (GA)n Simple_repeat Simple_repeat 2 37 0 1 1238 564 233 130 49 chr3 85610560 85610776 -73989007 + L1MA5 LINE L1 5938 6176 -124 1 1238 1628 190 171 110 chr3 85610776 85611278 -73988505 - MT2A LTR ERVL 0 533 1 1 1238 564 233 130 49 chr3 85611278 85611345 -73988438 + L1MA5 LINE L1 6177 6244 -56 1 1238 285 293 13 0 chr3 85611352 85611427 -73988356 + ID4_ SINE ID 8 83 0 1 1238 286 191 57 0 chr3 85611474 85611615 -73988168 + GA-rich Low_complexity Low_complexity 4 152 0 1 1238 8913 146 15 4 chr3 85611687 85613916 -73985867 + Lx LINE L1 4396 6654 0 1 1238 292 262 45 27 chr3 85613996 85614106 -73985677 + RLTR25B LTR ERVK 427 538 -490 1 1238 556 75 0 230 chr3 85614011 85614150 -73985633 + B1_Mus2 SINE Alu 41 147 0 1 1238 273 305 75 9 chr3 85614530 85614636 -73985147 + MLT1J LTR MaLR 400 512 0 1 1238 276 371 69 0 chr3 85615123 85615282 -73984501 - LTR84b LTR ERVL -90 671 502 1 1238 2643 117 47 10 chr3 85615634 85616040 -73983743 + MTC LTR MaLR 1 421 0 1 1238 242 301 73 22 chr3 85616085 85616221 -73983562 + MIR SINE MIR 31 173 -89 1 1238 278 271 0 0 chr3 85616542 85616612 -73983171 + ID4_ SINE ID 1 70 -13 1 1238 258 303 180 0 chr3 85617488 85617610 -73982173 - MER5A DNA MER1_type -10 179 36 1 1238 432 208 167 10 chr3 85617742 85617844 -73981939 + PB1D7 SINE Alu 2 119 -1 1 1238 354 283 0 0 chr3 85619692 85619812 -73979971 + (TA)n Simple_repeat Simple_repeat 1 120 0 1 1238 242 211 0 55 chr3 85619917 85619972 -73979811 - tRNA-Ala-GCY_ tRNA tRNA -8 67 16 1 1238 1233 214 129 12 chr3 85620711 85621051 -73978732 - MTD LTR MaLR -2 417 38 1 1238 3789 237 57 32 chr3 85621364 85621828 -73977955 + Lx8 LINE L1 6346 6811 -662 1 1238 1486 217 43 27 chr3 85621828 85622197 -73977586 - MTE2b LTR MaLR 0 379 5 1 1238 3789 237 57 32 chr3 85622197 85622677 -73977106 + Lx8 LINE L1 6812 7314 -159 1 1238 23 78 0 0 chr3 85622806 85622857 -73976926 + AT_rich Low_complexity Low_complexity 1 51 0 1 1238 718 255 19 72 chr3 85622934 85623141 -73976642 - B3A SINE B2 -1 197 2 1 1238 342 226 47 12 chr3 85623857 85623942 -73975841 + PB1D10 SINE Alu 3 90 -27 1 1238 1070 120 6 0 chr3 85623946 85624121 -73975662 + (GGAA)n Simple_repeat Simple_repeat 1 176 0 1 1238 238 289 64 26 chr3 85626185 85626263 -73973520 + B3A SINE B2 52 134 -64 1 1238 4329 225 33 15 chr3 85626366 85627279 -73972504 + RMER1C Other Other 402 1330 -12 1 1238 1593 224 73 20 chr3 85627421 85627817 -73971966 - MTD LTR MaLR -2 417 1 1 1238 934 218 57 0 chr3 85627922 85628115 -73971668 + B3 SINE B2 2 205 -11 1 1238 213 151 0 0 chr3 85628693 85628746 -73971037 + T-rich Low_complexity Low_complexity 1 53 0 1 1238 351 141 0 0 chr3 85628746 85628810 -73970973 - B1_Mur3 SINE Alu 0 149 86 1 1238 695 244 16 23 chr3 85629486 85629677 -73970106 - B3 SINE B2 -7 188 2 1 1238 22 35 0 0 chr3 85629802 85629831 -73969952 + AT_rich Low_complexity Low_complexity 1 29 0 1 1238 351 0 0 0 chr3 85630263 85630302 -73969481 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 1238 320 308 59 8 chr3 85630304 85630422 -73969361 - RSINE1 SINE B4 -17 148 25 1 1238 1110 68 0 20 chr3 85630478 85630628 -73969155 - B1_Mus2 SINE Alu 0 147 1 1 1238 240 59 0 0 chr3 85631719 85631753 -73968030 + (A)n Simple_repeat Simple_repeat 1 34 0 1 1238 189 0 0 0 chr3 85632292 85632313 -73967470 + (TCTG)n Simple_repeat Simple_repeat 4 24 0 1 1238 751 180 21 35 chr3 85632313 85632457 -73967326 - B1_Mur3 SINE Alu -7 142 1 1 1238 653 247 67 0 chr3 85633743 85633893 -73965890 + ID_B1 SINE B4 49 208 -16 1 1238 37 0 0 0 chr3 85634500 85634537 -73965246 + AT_rich Low_complexity Low_complexity 1 37 0 1 1238 715 267 21 10 chr3 85634678 85634871 -73964912 + B3A SINE B2 4 198 0 1 1238 1849 167 60 8 chr3 85634912 85635292 -73964491 - MTD LTR MaLR -14 405 6 1 1238 21 0 0 0 chr3 85635433 85635454 -73964329 + AT_rich Low_complexity Low_complexity 1 21 0 1 1238 353 257 0 84 chr3 85635505 85635624 -73964159 + B1F SINE Alu 1 109 -40 1 1238 1317 153 9 0 chr3 85637094 85637310 -73962473 - URR1B DNA MER1_type -1 224 7 2 1238 210 246 132 40 chr3 85637425 85637501 -73962282 - ID4 SINE ID 0 83 1 2 1238 730 174 181 2 chr3 85637693 85637868 -73961915 + B3 SINE B2 1 211 -5 2 1238 576 212 0 50 chr3 85637886 85638005 -73961778 + B1_Mur2 SINE Alu 2 114 -35 2 1238 859 273 111 49 chr3 85638010 85638371 -73961412 + Lx9 LINE L1 6988 7372 -272 2 1238 189 0 0 0 chr3 85638371 85638392 -73961391 + (TATG)n Simple_repeat Simple_repeat 3 23 0 2 1238 1180 134 21 0 chr3 85638515 85638701 -73961082 + B2_Mm2 SINE B2 2 191 -4 2 1238 834 114 138 6 chr3 85639394 85639561 -73960222 + L1_Mus3 LINE L1 6449 6637 -1 2 1238 325 309 9 52 chr3 85639665 85639781 -73960002 - RSINE1 SINE B4 -54 111 1 2 1238 1216 106 11 22 chr3 85640404 85640587 -73959196 + B2_Mm2 SINE B2 1 181 -14 2 1238 369 198 71 81 chr3 85640863 85640962 -73958821 - MER5A DNA MER1_type -6 183 86 2 1238 961 281 39 75 chr3 85641086 85641475 -73958308 - MTE2b LTR MaLR -4 375 1 2 1238 180 0 0 0 chr3 85641572 85641592 -73958191 + (A)n Simple_repeat Simple_repeat 1 20 0 2 1238 598 265 65 16 chr3 85642226 85642410 -73957373 + RMER30 DNA MER1_type 9 201 -1 2 1238 885 98 20 0 chr3 85643053 85643206 -73956577 - Lx3_Mus LINE L1 0 7009 6854 2 1238 285 75 0 0 chr3 85643206 85643246 -73956537 + MuRRS4-int LTR ERV1 5024 5063 0 2 1238 1679 120 64 48 chr3 85643257 85643633 -73956150 + LTRIS4 LTR ERV1 126 507 0 2 1238 1252 82 0 0 chr3 85643633 85643791 -73955992 - Lx3_Mus LINE L1 -152 6857 6700 2 1238 216 67 0 0 chr3 85643925 85643955 -73955828 + (CACAA)n Simple_repeat Simple_repeat 3 32 0 2 1238 677 194 0 8 chr3 85645034 85645159 -73954624 + URR1B DNA MER1_type 2 125 -100 2 1238 264 30 0 0 chr3 85646104 85646137 -73953646 + (TG)n Simple_repeat Simple_repeat 1 33 0 2 1238 1343 168 95 55 chr3 85647253 85647580 -73952203 - Lx7 LINE L1 0 7696 7357 2 1238 1118 221 251 18 chr3 85647645 85648032 -73951751 - Lx7 LINE L1 -328 7368 6892 2 1238 731 170 30 0 chr3 85648032 85648167 -73951616 + B1_Mur3 SINE Alu 11 149 0 2 1238 270 143 0 0 chr3 85648333 85648375 -73951408 + ID_B1 SINE B4 94 135 -89 2 1238 189 171 0 0 chr3 85648478 85648513 -73951270 + CT-rich Low_complexity Low_complexity 2 36 0 2 1238 355 240 13 0 chr3 85648935 85649010 -73950773 - ID4_ SINE ID -6 77 2 2 1238 234 252 35 88 chr3 85649035 85649148 -73950635 - PB1D10 SINE Alu -10 107 1 2 1238 1076 209 59 140 chr3 85649867 85650273 -73949510 + MTE2a LTR MaLR 1 373 -6 2 1238 299 25 25 0 chr3 85650852 85650892 -73948891 + (TAAA)n Simple_repeat Simple_repeat 4 44 0 2 1238 189 0 0 0 chr3 85650896 85650917 -73948866 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 2 1238 263 282 80 128 chr3 85651859 85652046 -73947737 - MIR SINE MIR -19 243 66 2 1238 266 279 148 46 chr3 85652054 85652317 -73947466 + L1ME4a LINE L1 5833 6122 -2 2 1238 21 36 0 0 chr3 85653009 85653037 -73946746 + AT_rich Low_complexity Low_complexity 1 28 0 2 1238 227 298 0 0 chr3 85653063 85653120 -73946663 + ID4 SINE ID 27 83 0 2 1238 342 0 0 0 chr3 85653257 85653295 -73946488 + (CA)n Simple_repeat Simple_repeat 1 38 0 2 1238 396 240 221 0 chr3 85653529 85653633 -73946150 + B1F SINE Alu 1 127 -22 2 1238 201 108 0 0 chr3 85653768 85653805 -73945978 + (TTTTG)n Simple_repeat Simple_repeat 2 38 0 2 1238 279 54 0 0 chr3 85653880 85653917 -73945866 + (TG)n Simple_repeat Simple_repeat 2 38 0 2 1238 702 238 118 13 chr3 85654062 85654300 -73945483 - MER2 DNA MER2_type -23 322 60 2 1238 348 224 0 45 chr3 85654872 85654961 -73944822 + PB1D10 SINE Alu 33 117 0 2 1238 406 207 113 24 chr3 85655438 85655562 -73944221 + L1MA8 LINE L1 6001 6135 -156 2 1238 378 0 0 0 chr3 85655811 85655853 -73943930 + (TA)n Simple_repeat Simple_repeat 2 43 0 2 1238 648 217 0 44 chr3 85655854 85655989 -73943794 - B4 SINE B4 -162 130 2 2 1238 242 324 21 14 chr3 85656014 85656155 -73943628 + Lx9 LINE L1 7346 7487 -157 2 1238 624 116 0 0 chr3 85656166 85656261 -73943522 + (GGA)n Simple_repeat Simple_repeat 3 97 0 2 1238 253 319 27 40 chr3 85656398 85656623 -73943160 + L1ME3B LINE L1 5790 6011 -229 2 1238 244 303 172 0 chr3 85657014 85657113 -73942670 + RSINE1 SINE B4 2 117 -48 2 1238 291 114 0 0 chr3 85657132 85657176 -73942607 + (GA)n Simple_repeat Simple_repeat 1 44 0 2 1238 22 0 0 0 chr3 85657293 85657315 -73942468 + AT_rich Low_complexity Low_complexity 1 22 0 2 1238 333 294 159 0 chr3 85657418 85657544 -73942239 - RSINE1 SINE B4 -17 148 3 2 1238 264 122 0 0 chr3 85657955 85657996 -73941787 + (GGGA)n Simple_repeat Simple_repeat 4 44 0 2 1238 483 286 27 20 chr3 85658155 85658305 -73941478 - B4A SINE B4 -141 151 1 2 1238 1115 258 100 16 chr3 85659773 85660143 -73939640 - MTD LTR MaLR 0 419 19 2 1238 1251 113 0 2 chr3 85660167 85660662 -73939121 + (TG)n Simple_repeat Simple_repeat 1 494 0 2 1238 328 286 0 60 chr3 85660688 85660822 -73938961 - Charlie18a DNA MER1_type -71 271 146 2 1238 22 0 0 0 chr3 85660987 85661009 -73938774 + AT_rich Low_complexity Low_complexity 1 22 0 2 1238 181 298 0 0 chr3 85662028 85662085 -73937698 - MIR SINE MIR -120 142 86 2 1238 675 247 95 0 chr3 85662451 85662641 -73937142 - ID_B1 SINE B4 -10 214 7 2 1238 255 370 46 11 chr3 85663017 85663192 -73936591 - L4 LINE RTE -208 1821 1641 2 1238 486 0 0 0 chr3 85663262 85663316 -73936467 + (TTTTG)n Simple_repeat Simple_repeat 2 55 0 2 1238 404 195 13 0 chr3 85663639 85663716 -73936067 - B3 SINE B2 -137 79 2 2 1238 673 168 0 0 chr3 85663728 85663853 -73935930 + B1_Mus2 SINE Alu 23 147 0 2 1238 257 197 0 62 chr3 85663869 85663934 -73935849 + GA-rich Low_complexity Low_complexity 1 61 0 2 1238 1575 38 5 16 chr3 85664203 85664392 -73935391 + B2_Mm1a SINE B2 1 187 -6 2 1238 200 209 0 23 chr3 85664663 85664707 -73935076 + CT-rich Low_complexity Low_complexity 2 44 0 2 1238 1319 249 42 6 chr3 85664928 85665284 -73934499 - ORR1D2 LTR MaLR -1 369 1 2 1238 801 193 21 0 chr3 85665669 85665814 -73933969 + B1_Mus1 SINE Alu 1 148 0 2 1238 253 336 29 29 chr3 85666739 85666877 -73932906 + L2a LINE L2 3256 3393 -33 2 1238 22 0 0 0 chr3 85667214 85667236 -73932547 + AT_rich Low_complexity Low_complexity 1 22 0 2 1238 396 317 69 35 chr3 85667321 85667465 -73932318 - B1F1 SINE Alu 0 149 1 2 1238 657 297 60 49 chr3 85667492 85667842 -73931941 + RMER5 LTR ERV1 155 508 -26 2 1238 1722 44 0 5 chr3 85669445 85669649 -73930134 + L1_Mus1 LINE L1 6365 6567 0 2 1238 282 313 10 39 chr3 85670203 85670306 -73929477 + MARNA DNA Mariner 86 185 -401 2 1238 398 303 48 21 chr3 85670215 85670404 -73929379 - MARNA DNA Mariner -96 490 297 2 1238 697 287 73 10 chr3 85670563 85670767 -73929016 + MER2 DNA MER2_type 99 315 -30 2 1238 236 357 94 53 chr3 85670951 85671291 -73928492 - L2c LINE L2 0 3387 3034 2 1238 369 248 168 0 chr3 85672752 85672790 -73926993 + L1MA5 LINE L1 5894 5941 -359 2 1238 488 16 16 0 chr3 85672790 85672851 -73926932 + (TAGA)n Simple_repeat Simple_repeat 2 63 0 2 1238 369 248 168 0 chr3 85672851 85672949 -73926834 + L1MA5 LINE L1 5942 6052 -248 2 1238 1940 138 12 25 chr3 85672949 85673276 -73926507 - LTRIS3 LTR ERV1 0 512 190 2 1238 251 125 0 0 chr3 85673309 85673349 -73926434 - MuRRS4-int LTR ERV1 0 5063 5024 2 1238 408 221 107 57 chr3 85673350 85673527 -73926256 + L1MA5 LINE L1 6050 6235 -65 2 1238 406 250 12 0 chr3 85673530 85673614 -73926169 + PB1D10 SINE Alu 24 108 -9 2 1238 401 363 28 56 chr3 85674664 85674842 -73924941 - B4 SINE B4 -118 174 2 2 1238 247 263 0 50 chr3 85674868 85674928 -73924855 + ID_B1 SINE B4 83 139 -85 2 1238 895 159 0 7 chr3 85675185 85675324 -73924459 - B1_Mur4 SINE Alu -12 138 1 2 1238 1011 198 17 22 chr3 85677492 85677673 -73922110 + B3 SINE B2 1 180 -36 2 1238 1193 77 0 0 chr3 85677883 85678026 -73921757 + B1_Mm SINE Alu 5 147 0 2 1238 239 325 25 31 chr3 85678162 85678321 -73921462 - L1MC5 LINE L1 -728 7233 7076 2 1238 427 243 162 19 chr3 85678415 85678520 -73921263 - PB1D7 SINE Alu 0 120 1 2 1238 342 244 13 0 chr3 85679742 85679820 -73919963 - ID4 SINE ID -2 81 3 2 1238 259 244 103 0 chr3 85679820 85679855 -73919928 - PB1 SINE Alu -76 51 9 2 1238 197 333 51 108 chr3 85679869 85680027 -73919756 - MIRc SINE MIR -118 150 2 2 1238 184 211 0 0 chr3 85681050 85681088 -73918695 + MIRc SINE MIR 194 231 -37 2 1238 413 269 110 46 chr3 85681209 85681480 -73918303 - MTEa LTR MaLR 0 379 72 2 1238 243 255 79 116 chr3 85681655 85681819 -73917964 - L2a LINE L2 -2 3424 3267 2 1238 331 269 94 77 chr3 85682229 85682410 -73917373 - B3 SINE B2 -11 184 1 2 1238 364 313 7 26 chr3 85683654 85683805 -73915978 + GA-rich Low_complexity Low_complexity 2 149 0 2 1238 280 261 153 0 chr3 85683811 85683922 -73915861 - MLT2B4 LTR ERVL -56 500 373 2 1238 290 274 136 10 chr3 85684030 85684133 -73915650 - MLT2B4 LTR ERVL -375 181 66 2 1238 536 170 70 0 chr3 85684520 85684620 -73915163 - PB1D10 SINE Alu -8 109 3 2 1238 468 264 83 0 chr3 85685139 85685260 -73914523 - B1F SINE Alu -18 131 1 2 1238 21 0 0 0 chr3 85685316 85685337 -73914446 + AT_rich Low_complexity Low_complexity 1 21 0 2 1238 818 248 109 0 chr3 85685600 85685838 -73913945 + B4 SINE B4 1 264 -28 2 1238 264 59 0 0 chr3 85685842 85685876 -73913907 + (CA)n Simple_repeat Simple_repeat 1 34 0 3 1238 24 53 0 0 chr3 85685882 85685920 -73913863 + AT_rich Low_complexity Low_complexity 1 38 0 3 1238 833 193 0 7 chr3 85685921 85686067 -73913716 + ID_B1 SINE B4 80 224 0 3 1238 295 242 116 88 chr3 85685943 85686124 -73913659 - YREP_Mm Unknown Unknown -1516 296 111 3 1238 274 283 18 9 chr3 85686170 85686284 -73913499 + (TA)n Simple_repeat Simple_repeat 2 116 0 3 1238 893 242 33 14 chr3 85686446 85686656 -73913127 - B3 SINE B2 -1 215 2 3 1238 201 74 0 0 chr3 85686760 85686787 -73912996 + (GA)n Simple_repeat Simple_repeat 2 28 0 3 1238 1251 62 0 0 chr3 85687462 85687607 -73912176 + B1_Mus1 SINE Alu 1 145 -3 3 1238 279 0 0 0 chr3 85687607 85687638 -73912145 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 3 1238 183 100 0 0 chr3 85687815 85687845 -73911938 + (TTAA)n Simple_repeat Simple_repeat 3 32 0 3 1238 567 56 0 0 chr3 85687849 85687921 -73911862 - B1_Mus2 SINE Alu -75 72 1 3 1238 416 188 12 12 chr3 85687921 85687932 -73911851 - ID_B1 SINE B4 -69 152 70 3 1238 960 43 49 6 chr3 85688004 85688168 -73911615 + (TG)n Simple_repeat Simple_repeat 2 172 0 3 1238 350 312 7 54 chr3 85688228 85688377 -73911406 + RSINE1 SINE B4 2 143 -22 3 1238 538 242 214 27 chr3 85688497 85688684 -73911099 + B4A SINE B4 71 292 0 3 1238 191 296 27 109 chr3 85688778 85688888 -73910895 + MIR SINE MIR 38 138 -70 3 1238 229 239 111 32 chr3 85689284 85689363 -73910420 + BC1_Mm scRNA scRNA 7 90 -62 3 1238 207 162 0 0 chr3 85690520 85690557 -73909226 + (CA)n Simple_repeat Simple_repeat 1 37 0 3 1238 208 247 0 52 chr3 85691445 85691522 -73908261 + C-rich Low_complexity Low_complexity 5 77 0 3 1238 240 35 0 0 chr3 85692713 85692742 -73907041 + (CCA)n Simple_repeat Simple_repeat 1 29 0 3 1238 189 358 15 0 chr3 85692895 85692962 -73906821 - L2b LINE L2 0 3375 3308 3 1238 250 269 73 15 chr3 85693077 85693145 -73906638 + MTE2b LTR MaLR 293 364 -15 3 1238 1219 55 14 0 chr3 85693437 85693582 -73906201 + B1_Mus1 SINE Alu 2 148 0 3 1238 217 363 82 0 chr3 85694031 85694166 -73905617 + MIR SINE MIR 39 184 -78 3 1238 377 287 72 22 chr3 85694540 85694679 -73905104 + L1ME4a LINE L1 5966 6111 -13 3 1238 222 37 0 0 chr3 85694760 85694787 -73904996 + (TTG)n Simple_repeat Simple_repeat 2 28 0 3 1238 555 177 42 58 chr3 85694791 85694911 -73904872 - B1_Mur1 SINE Alu -17 132 15 3 1238 222 325 11 46 chr3 85694841 85694928 -73904855 - B4A SINE B4 -126 166 83 3 1238 618 287 62 49 chr3 85694977 85695306 -73904477 - RLTR16 LTR ERVK -280 412 32 3 1238 759 264 16 5 chr3 85695399 85695616 -73904167 + L1M3 LINE L1 5526 5737 -434 3 1238 299 289 35 14 chr3 85696214 85696358 -73903425 - L1M5 LINE L1 -1528 4618 4472 3 1238 470 216 68 59 chr3 85696556 85696674 -73903109 - PB1D9 SINE Alu 0 120 2 3 1238 435 247 20 10 chr3 85696902 85697000 -73902783 - B4A SINE B4 -190 102 4 3 1238 972 33 0 24 chr3 85697437 85697562 -73902221 - B1_Mus1 SINE Alu -2 146 25 3 1238 333 268 159 42 chr3 85697609 85697823 -73901960 - L1M4 LINE L1 -3213 2933 2695 3 1238 1603 172 32 24 chr3 85698075 85698414 -73901369 - ORR1C2 LTR MaLR -5 379 5 3 1238 3435 129 88 76 chr3 85698414 85699018 -73900765 - RMER19C LTR ERVK 0 611 1 3 1238 2376 85 54 3 chr3 85699046 85699378 -73900405 - Lx LINE L1 -1 6653 6305 3 1238 625 148 87 0 chr3 85699380 85699495 -73900288 - B1F2 SINE Alu -6 143 19 3 1238 379 266 117 24 chr3 85699607 85699768 -73900015 - MLT2D LTR ERVL -183 281 92 3 1238 1248 227 52 120 chr3 85699775 85700176 -73899607 + MTE2a LTR MaLR 1 374 -5 3 1238 342 45 0 0 chr3 85700237 85700281 -73899502 + (TG)n Simple_repeat Simple_repeat 2 45 0 3 1238 306 0 0 0 chr3 85700351 85700385 -73899398 + (TTTG)n Simple_repeat Simple_repeat 4 37 0 3 1238 384 328 54 0 chr3 85700385 85700514 -73899269 - B1F SINE Alu -14 135 1 3 1238 377 237 288 34 chr3 85701318 85701436 -73898347 - B1_Mur2 SINE Alu 0 149 2 3 1238 504 302 37 119 chr3 85701472 85701542 -73898241 + B4 SINE B4 2 72 -220 3 1238 348 111 0 0 chr3 85701542 85701605 -73898178 + (CA)n Simple_repeat Simple_repeat 2 64 0 3 1238 504 302 37 119 chr3 85701605 85701654 -73898129 + B4 SINE B4 73 220 -67 3 1238 677 176 84 0 chr3 85701654 85701773 -73898010 + B1_Mur4 SINE Alu 16 144 -6 3 1238 192 310 118 52 chr3 85701968 85702104 -73897679 - L3 LINE CR1 -1123 3366 3222 3 1238 487 252 52 9 chr3 85702335 85702451 -73897332 - PB1 SINE Alu -2 125 5 3 1238 404 207 218 82 chr3 85703562 85703709 -73896074 + MER5A DNA MER1_type 23 189 0 3 1238 449 264 25 8 chr3 85703752 85703874 -73895909 + B1F SINE Alu 18 141 -8 3 1238 240 234 44 59 chr3 85703880 85703948 -73895835 + ID4_ SINE ID 1 67 -16 3 1238 253 197 28 0 chr3 85703965 85704036 -73895747 + GA-rich Low_complexity Low_complexity 4 76 0 3 1238 252 122 0 0 chr3 85704282 85704323 -73895460 + (TCC)n Simple_repeat Simple_repeat 3 43 0 3 1238 384 22 0 0 chr3 85704838 85704883 -73894900 + (TTA)n Simple_repeat Simple_repeat 3 47 0 3 1238 1187 227 46 35 chr3 85704889 85705172 -73894611 - Lx5 LINE L1 -16 7034 6749 3 1238 321 360 34 17 chr3 85705231 85705278 -73894505 + MER5B DNA MER1_type 1 50 -128 3 1238 228 24 48 24 chr3 85705278 85705320 -73894463 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 3 1238 321 360 34 17 chr3 85705320 85705447 -73894336 + MER5B DNA MER1_type 51 177 -1 3 1238 468 277 0 18 chr3 85705650 85705764 -73894019 + PB1D10 SINE Alu 1 112 -5 3 1238 362 219 99 23 chr3 85705825 85705956 -73893827 + L1M3 LINE L1 5054 5194 -946 3 1238 322 302 78 57 chr3 85706132 85706325 -73893458 + L1M3 LINE L1 5387 5583 -600 3 1238 23 0 0 0 chr3 85706328 85706351 -73893432 + AT_rich Low_complexity Low_complexity 1 23 0 3 1238 543 235 71 39 chr3 85706354 85706509 -73893274 - MLT1A1 LTR MaLR -1 407 248 3 1238 1177 241 67 30 chr3 85706530 85706829 -73892954 + MTEa LTR MaLR 1 310 -69 3 1238 2532 126 84 10 chr3 85706833 85707225 -73892558 - MTC LTR MaLR 0 421 1 3 1238 719 222 79 21 chr3 85707229 85707410 -73892373 - ORR1E LTR MaLR -184 175 6 3 1238 366 275 12 0 chr3 85707532 85707612 -73892171 - ID4 SINE ID -1 82 2 3 1238 266 250 72 36 chr3 85707727 85707810 -73891973 - B1F SINE Alu -3 146 61 3 1238 466 198 12 0 chr3 85707811 85707897 -73891886 + ID_B1 SINE B4 138 224 0 3 1238 326 235 0 10 chr3 85707943 85708046 -73891737 + (TA)n Simple_repeat Simple_repeat 2 103 0 3 1238 24 32 0 0 chr3 85708360 85708391 -73891392 + AT_rich Low_complexity Low_complexity 1 31 0 3 1238 662 209 31 19 chr3 85708651 85708812 -73890971 - MER5A1 DNA MER1_type -3 163 1 3 1238 297 374 48 16 chr3 85708817 85708942 -73890841 + MER20B DNA MER1_type 43 171 -612 3 1238 1453 122 249 17 chr3 85709129 85709422 -73890361 + ORR1B2 LTR MaLR 1 361 -6 3 1238 657 279 148 76 chr3 85709490 85709890 -73889893 + L1MC4 LINE L1 6514 6933 -1109 3 1238 1284 202 139 41 chr3 85709890 85710235 -73889548 + MTE2a LTR MaLR 1 379 0 3 1238 657 279 148 76 chr3 85710235 85710338 -73889445 + L1MC4 LINE L1 6934 7019 -1023 3 1238 346 258 172 0 chr3 85710338 85710431 -73889352 + PB1D10 SINE Alu 3 111 -6 3 1238 657 279 148 76 chr3 85710431 85710507 -73889276 + L1MC4 LINE L1 7020 7135 -907 3 1238 2136 210 57 18 chr3 85710515 85711009 -73888774 - MMAR1 DNA Mariner 0 1286 774 3 1238 610 234 130 25 chr3 85711013 85711339 -73888444 - ORR1D2 LTR MaLR 0 359 1 3 1238 1132 271 40 98 chr3 85711339 85711732 -73888051 - MMAR1 DNA Mariner -524 762 393 3 1238 618 14 0 0 chr3 85711735 85711806 -73887977 + (TTC)n Simple_repeat Simple_repeat 1 71 0 3 1238 270 213 0 26 chr3 85712193 85712270 -73887513 + CT-rich Low_complexity Low_complexity 2 76 0 3 1238 983 37 0 0 chr3 85712274 85712381 -73887402 - U6 snRNA snRNA 0 107 1 3 1238 610 161 144 194 chr3 85712400 85712585 -73887198 - MMAR1 DNA Mariner -933 353 165 3 1238 372 298 183 0 chr3 85712585 85712716 -73887067 + RSINE1 SINE B4 4 158 -7 3 1238 610 161 144 194 chr3 85712716 85712808 -73886975 - MMAR1 DNA Mariner -1122 164 90 3 1238 742 261 38 0 chr3 85712808 85712965 -73886818 + RSINE1 SINE B4 3 165 0 3 1238 225 301 123 89 chr3 85712818 85712997 -73886786 + B3A SINE B2 12 196 -2 3 1238 23 33 0 0 chr3 85713008 85713038 -73886745 + AT_rich Low_complexity Low_complexity 1 30 0 3 1238 278 205 0 25 chr3 85713038 85713118 -73886665 - MMAR1 DNA Mariner -1208 78 1 3 1238 223 191 0 96 chr3 85713266 85713370 -73886413 + (TTATA)n Simple_repeat Simple_repeat 1 94 0 3 1238 799 221 158 106 chr3 85713480 85713829 -73885954 - ORR1D2 LTR MaLR -2 368 2 3 1238 471 282 55 92 chr3 85713860 85713935 -73885848 + RSINE1 SINE B4 2 79 -86 3 1238 2863 135 75 22 chr3 85713935 85714429 -73885354 - RLTR28 LTR ERVL -4 520 1 3 1238 471 282 55 92 chr3 85714429 85714517 -73885266 + RSINE1 SINE B4 80 159 -6 3 1238 462 288 116 33 chr3 85714660 85714961 -73884822 + L1MC4 LINE L1 7396 7709 -173 3 1238 336 305 94 50 chr3 85714966 85715125 -73884658 + ORR1E LTR MaLR 5 170 -189 3 1238 471 18 0 0 chr3 85715226 85715282 -73884501 + (GA)n Simple_repeat Simple_repeat 2 57 0 3 1238 724 141 21 36 chr3 85715335 85715475 -73884308 + B1_Mur4 SINE Alu 13 150 0 3 1238 607 116 28 19 chr3 85715523 85715639 -73884144 + RMER17C LTR ERVK 1 79 -331 3 1238 392 137 142 104 chr3 85715833 85715939 -73883844 + B1_Mur3 SINE Alu 8 117 -32 3 1238 25 0 0 0 chr3 85716361 85716386 -73883397 + AT_rich Low_complexity Low_complexity 1 25 0 3 1238 324 193 0 34 chr3 85716478 85716537 -73883246 - PB1D9 SINE Alu -62 58 2 3 1238 234 279 112 28 chr3 85717295 85717402 -73882381 - MER5A DNA MER1_type -72 117 2 3 1238 550 263 85 116 chr3 85717411 85717563 -73882220 - MER20 DNA MER1_type 0 219 83 3 1238 335 250 122 28 chr3 85717563 85717670 -73882113 + PB1D10 SINE Alu 1 117 0 3 1238 550 263 85 116 chr3 85717670 85717741 -73882042 - MER20 DNA MER1_type -137 82 3 3 1238 1128 267 117 6 chr3 85717964 85718281 -73881502 - MTEb LTR MaLR -25 354 3 3 1238 720 255 82 15 chr3 85719137 85719332 -73880451 + ID_B1 SINE B4 9 216 -8 4 1238 450 127 0 0 chr3 85720257 85720328 -73879455 + (CATA)n Simple_repeat Simple_repeat 2 72 0 4 1238 419 261 190 95 chr3 85720448 85720711 -73879072 - B4 SINE B4 -2 290 3 4 1238 890 278 69 4 chr3 85720723 85720997 -73878786 - L1MB3 LINE L1 -54 6129 5838 4 1239 376 286 24 32 chr3 85722685 85722808 -73876975 + B1F2 SINE Alu 1 122 -27 4 1239 986 253 4 45 chr3 85722922 85723166 -73876617 - MERVL_2A-int LTR ERVL -385 5376 5143 4 1239 1391 266 57 0 chr3 85723159 85723512 -73876271 - MERVL_2A-int LTR ERVL -1708 4053 3681 4 1239 378 0 0 0 chr3 85723576 85723618 -73876165 + (CA)n Simple_repeat Simple_repeat 2 43 0 4 1239 377 289 18 145 chr3 85723682 85723848 -73875935 - MT2A LTR ERVL -190 343 199 4 1239 180 0 0 0 chr3 85723997 85724017 -73875766 + (TAA)n Simple_repeat Simple_repeat 2 21 0 4 1239 336 250 89 44 chr3 85724018 85724198 -73875585 + L1M5 LINE L1 3786 3973 -2173 4 1239 298 308 21 42 chr3 85724239 85724334 -73875449 + ID_B1 SINE B4 77 169 -55 4 1239 407 262 0 46 chr3 85724256 85724364 -73875419 + PB1D10 SINE Alu 15 117 0 4 1239 558 167 376 6 chr3 85724433 85724590 -73875193 + URR1A DNA MER1_type 2 216 -10 4 1239 5090 84 13 3 chr3 85724595 85725288 -73874495 + Lx LINE L1 5939 6638 -16 4 1239 1090 84 0 0 chr3 85725295 85725437 -73874346 + B1_Mm SINE Alu 5 146 -1 4 1239 383 301 24 0 chr3 85725448 85725614 -73874169 + L1M5 LINE L1 4156 4325 -1821 4 1239 456 250 36 93 chr3 85725658 85725852 -73873931 + L1MC2 LINE L1 6053 6235 -109 4 1239 2259 139 151 9 chr3 85725843 85726286 -73873497 + Lx9 LINE L1 7132 7637 -7 4 1239 216 0 0 0 chr3 85726558 85726582 -73873201 + (A)n Simple_repeat Simple_repeat 1 24 0 4 1239 21 0 0 0 chr3 85727138 85727159 -73872624 + AT_rich Low_complexity Low_complexity 1 21 0 4 1239 397 223 270 10 chr3 85727362 85727572 -73872211 - B4A SINE B4 -29 263 1 4 1239 278 313 42 42 chr3 85727593 85727713 -73872070 - PB1D7 SINE Alu 0 120 1 4 1239 236 296 13 112 chr3 85729372 85729524 -73870259 + MLT1K LTR MaLR 456 592 -3 4 1239 280 148 16 16 chr3 85729829 85729891 -73869892 + (CAT)n Simple_repeat Simple_repeat 3 64 0 4 1239 240 35 0 0 chr3 85731007 85731036 -73868747 + (TG)n Simple_repeat Simple_repeat 1 29 0 4 1239 328 273 0 0 chr3 85731552 85731618 -73868165 - tRNA-Ala-GCY_ tRNA tRNA -8 67 2 4 1239 1274 34 0 0 chr3 85732600 85732747 -73867036 + B1_Mm SINE Alu 1 147 0 4 1239 327 113 0 0 chr3 85732747 85732809 -73866974 + (A)n Simple_repeat Simple_repeat 1 62 0 4 1239 192 368 31 21 chr3 85733027 85733124 -73866659 - MIRb SINE MIR -61 207 110 4 1239 195 42 0 0 chr3 85733190 85733214 -73866569 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 4 1239 699 298 56 30 chr3 85733274 85733544 -73866239 + B4A SINE B4 8 284 -8 4 1239 420 150 0 0 chr3 85733571 85733651 -73866132 + (CA)n Simple_repeat Simple_repeat 1 80 0 4 1239 1070 261 111 12 chr3 85733760 85734167 -73865616 - MLT1C LTR MaLR -16 451 5 4 1239 360 280 98 0 chr3 85734209 85734352 -73865431 + RSINE1 SINE B4 3 159 -6 4 1239 318 211 14 40 chr3 85734400 85734474 -73865309 + ID4 SINE ID 6 77 -6 4 1239 189 0 0 0 chr3 85735222 85735243 -73864540 + (T)n Simple_repeat Simple_repeat 1 21 0 4 1239 252 0 0 0 chr3 85736423 85736451 -73863332 + (A)n Simple_repeat Simple_repeat 1 28 0 4 1239 186 71 0 0 chr3 85736537 85736565 -73863218 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 4 1239 1094 103 109 6 chr3 85736724 85736899 -73862884 + B2_Mm2 SINE B2 3 195 0 4 1239 791 140 0 23 chr3 85736941 85737073 -73862710 + B1_Mur4 SINE Alu 6 134 -16 4 1239 240 255 0 0 chr3 85737073 85737120 -73862663 + polypurine Low_complexity Low_complexity 2 48 0 4 1239 808 255 37 33 chr3 85737394 85737609 -73862174 + B3 SINE B2 1 216 0 4 1239 181 316 0 0 chr3 85738029 85738086 -73861697 + MIR SINE MIR 184 240 -22 4 1239 633 257 14 0 chr3 85738166 85738306 -73861477 + ID_B1 SINE B4 83 224 0 4 1239 993 307 37 17 chr3 85738438 85738736 -73861047 + Tigger7 DNA MER2_type 1 304 -2187 4 1239 860 274 105 3 chr3 85738752 85739056 -73860727 + Tigger7 DNA MER2_type 2152 2486 -5 4 1239 183 139 0 0 chr3 85739436 85739472 -73860311 + (T)n Simple_repeat Simple_repeat 1 36 0 4 1239 336 250 14 0 chr3 85739493 85739565 -73860218 + HAL1 LINE L1 4 76 -2431 4 1239 230 254 41 27 chr3 85739756 85739829 -73859954 + HAL1 LINE L1 587 660 -1847 4 1239 5637 101 59 24 chr3 85739906 85741059 -73858724 + ORR1A4-int LTR MaLR 845 1692 -271 4 1239 1930 98 41 38 chr3 85741059 85741334 -73858449 + ORR1A4 LTR MaLR 1 286 -43 4 1239 906 79 269 26 chr3 85741334 85741490 -73858293 + B2_Mm2 SINE B2 1 194 -1 4 1239 1930 98 41 38 chr3 85741490 85741534 -73858249 + ORR1A4 LTR MaLR 287 321 -8 4 1239 222 171 0 0 chr3 85741646 85741687 -73858096 + (CTG)n Simple_repeat Simple_repeat 1 41 0 4 1239 290 240 125 0 chr3 85741752 85741848 -73857935 - PB1 SINE Alu -4 123 16 4 1239 329 211 112 31 chr3 85742476 85742574 -73857209 + B3A SINE B2 1 106 -92 4 1239 551 268 108 51 chr3 85742682 85743024 -73856759 - L1MC2 LINE L1 -32 6312 5960 4 1239 376 276 135 24 chr3 85743122 85743330 -73856453 - L1MA4A LINE L1 -279 6021 5791 4 1239 407 300 6 53 chr3 85743331 85743500 -73856283 + RSINE1 SINE B4 3 163 -2 4 1239 245 281 61 0 chr3 85743655 85743737 -73856046 - L1MA4A LINE L1 -574 5726 5640 4 1239 247 279 66 7 chr3 85743733 85743870 -73855913 - L1MC2 LINE L1 -1800 5985 5841 4 1239 417 336 16 16 chr3 85744134 85744261 -73855522 + ID_B1 SINE B4 91 217 -7 4 1239 215 385 14 29 chr3 85744295 85744434 -73855349 + ID_B1 SINE B4 63 199 -25 4 1239 465 258 78 0 chr3 85744325 85744453 -73855330 + B1_Mur1 SINE Alu 11 148 -1 4 1239 1359 62 0 0 chr3 85745097 85745275 -73854508 + (GGAGAA)n Simple_repeat Simple_repeat 3 180 0 4 1239 610 255 0 52 chr3 85745404 85745557 -73854226 + ID_B1 SINE B4 80 224 0 4 1239 453 66 0 0 chr3 85745573 85745634 -73854149 + (TG)n Simple_repeat Simple_repeat 2 62 0 4 1239 520 309 65 9 chr3 85745634 85745844 -73853939 - B4A SINE B4 -23 269 1 4 1239 306 73 0 0 chr3 85745928 85745969 -73853814 + (T)n Simple_repeat Simple_repeat 1 41 0 4 1239 1236 54 0 0 chr3 85745969 85746116 -73853667 - B1_Mm SINE Alu 0 147 1 4 1239 240 250 0 0 chr3 85746269 85746321 -73853462 - PB1D10 SINE Alu -2 115 64 4 1239 274 242 52 104 chr3 85746760 85746894 -73852889 - MER5A1 DNA MER1_type -22 144 18 4 1239 663 227 216 66 chr3 85746924 85747165 -73852618 + B4 SINE B4 2 278 -14 4 1239 721 83 55 5 chr3 85747660 85747878 -73851905 + (TG)n Simple_repeat Simple_repeat 1 229 0 4 1239 192 97 0 0 chr3 85747960 85747991 -73851792 + (C)n Simple_repeat Simple_repeat 1 31 0 4 1239 625 208 50 6 chr3 85748129 85748289 -73851494 + B3A SINE B2 2 168 -30 4 1239 981 144 14 0 chr3 85748348 85748494 -73851289 + B1_Mus1 SINE Alu 1 148 0 4 1239 287 78 62 0 chr3 85748495 85748559 -73851224 + (CAAAAA)n Simple_repeat Simple_repeat 5 72 0 4 1239 38 0 0 0 chr3 85748802 85748840 -73850943 + AT_rich Low_complexity Low_complexity 1 38 0 4 1239 1126 80 0 0 chr3 85749072 85749210 -73850573 + B1_Mus1 SINE Alu 1 138 -10 4 1239 252 0 0 0 chr3 85749704 85749732 -73850051 + (CA)n Simple_repeat Simple_repeat 1 28 0 4 1239 399 73 0 0 chr3 85749732 85749787 -73849996 + (GA)n Simple_repeat Simple_repeat 1 55 0 4 1239 454 139 11 34 chr3 85749828 85749917 -73849866 - BC1_Mm scRNA scRNA -65 87 1 4 1239 196 319 52 21 chr3 85750220 85750316 -73849467 + MIRb SINE MIR 118 216 -52 4 1239 491 321 141 45 chr3 85750595 85750908 -73848875 - MLT1J LTR MaLR -31 481 139 4 1239 352 318 26 26 chr3 85750940 85751053 -73848730 - PB1D10 SINE Alu -1 116 4 4 1239 6896 158 13 46 chr3 85751432 85752716 -73847067 - Lx5 LINE L1 0 7050 5809 4 1239 238 292 32 43 chr3 85752876 85752969 -73846814 - MLT1J LTR MaLR -273 92 1 4 1239 592 289 116 53 chr3 85753039 85753400 -73846383 + MLT1B LTR MaLR 5 388 -2 4 1239 372 22 0 0 chr3 85753988 85754033 -73845750 + (TA)n Simple_repeat Simple_repeat 1 45 0 4 1239 520 204 0 28 chr3 85754956 85755062 -73844721 + PB1D10 SINE Alu 1 103 -14 4 1239 239 345 8 103 chr3 85755556 85755682 -73844101 + ID_B1 SINE B4 36 149 -75 4 1239 220 135 56 37 chr3 85755686 85755729 -73844054 + T-rich Low_complexity Low_complexity 14 58 0 4 1239 891 156 0 20 chr3 85755729 85755879 -73843904 - B1_Mus2 SINE Alu 0 147 1 4 1239 346 197 28 0 chr3 85755889 85755960 -73843823 + B1F SINE Alu 77 149 0 4 1239 2013 124 91 29 chr3 85756106 85756481 -73843302 + RMER10B LTR ERVL 1 398 0 4 1239 323 329 59 62 chr3 85756779 85757084 -73842699 - MLT1H LTR MaLR -125 424 121 4 1239 850 217 73 11 chr3 85757837 85758028 -73841755 - ID_B1 SINE B4 -6 218 16 4 1239 1627 160 85 60 chr3 85758157 85758349 -73841434 + ORR1B1 LTR MaLR 21 221 -173 4 1239 1382 80 21 0 chr3 85758349 85758536 -73841247 - B2_Mm2 SINE B2 0 195 5 4 1239 1627 160 85 60 chr3 85758536 85758708 -73841075 + ORR1B1 LTR MaLR 222 394 0 4 1239 711 213 7 7 chr3 85758794 85758945 -73840838 + ORR1D1 LTR MaLR 1 151 -223 4 1239 829 99 30 0 chr3 85758953 85759084 -73840699 + B1_Mur3 SINE Alu 13 147 -2 4 1239 378 261 71 45 chr3 85759158 85759466 -73840317 + RLTR15 LTR ERVK 65 332 -27 4 1239 622 244 54 36 chr3 85759503 85759562 -73840221 + ORR1D1 LTR MaLR 205 267 -107 4 1239 2035 140 34 42 chr3 85759562 85759943 -73839840 - ORR1C1 LTR MaLR 0 378 1 4 1239 622 244 54 36 chr3 85759943 85760049 -73839734 + ORR1D1 LTR MaLR 268 373 -1 4 1239 21 0 0 0 chr3 85760257 85760278 -73839505 + AT_rich Low_complexity Low_complexity 1 21 0 4 1239 1830 194 78 8 chr3 85760393 85760777 -73839006 + MTD LTR MaLR 1 411 -8 4 1239 387 0 0 0 chr3 85760787 85760830 -73838953 + (TG)n Simple_repeat Simple_repeat 2 44 0 4 1239 967 80 7 0 chr3 85760900 85761038 -73838745 + L1_Mus1 LINE L1 6429 6567 0 4 1239 425 274 39 0 chr3 85761090 85761192 -73838591 + RSINE1 SINE B4 38 143 -22 5 1239 249 91 45 0 chr3 85761380 85761424 -73838359 - MT2A LTR ERVL 0 533 488 5 1239 644 208 15 15 chr3 85761429 85761561 -73838222 - MERVL_2A-int LTR ERVL -5280 481 350 5 1239 2119 173 35 5 chr3 85762209 85762529 -73837254 - MERVL_2A-int LTR ERVL -5378 383 65 5 1239 1160 62 14 0 chr3 85762529 85762674 -73837109 + B1_Mm SINE Alu 1 147 0 5 1239 2119 173 35 5 chr3 85762674 85762725 -73837058 - MERVL_2A-int LTR ERVL -5697 64 2 5 1239 288 122 0 0 chr3 85762725 85762774 -73837009 - MT2A LTR ERVL 0 533 485 5 1239 207 213 53 0 chr3 85762777 85762852 -73836931 + (TTATA)n Simple_repeat Simple_repeat 2 80 0 5 1239 2967 175 202 3 chr3 85762865 85763599 -73836184 - RMER1B Other Other -11 1055 116 5 1239 519 280 236 8 chr3 85763599 85763840 -73835943 - RMER1A Other Other -732 298 3 5 1239 1473 222 116 9 chr3 85763811 85764147 -73835636 - RMER1B Other Other -651 415 44 5 1239 604 232 23 65 chr3 85764365 85764621 -73835162 - MT2A LTR ERVL -118 483 84 5 1239 684 189 0 23 chr3 85764606 85764736 -73835047 - MT2A LTR ERVL -401 132 6 5 1239 557 295 60 0 chr3 85764973 85765156 -73834627 - ORR1E LTR MaLR -165 194 1 5 1239 719 228 205 60 chr3 85765166 85765497 -73834286 + MTEa LTR MaLR 1 379 0 5 1239 1386 269 42 28 chr3 85765497 85765968 -73833815 - L1MB7 LINE L1 -183 6001 5524 5 1239 259 192 26 0 chr3 85766076 85766154 -73833629 + CT-rich Low_complexity Low_complexity 1 80 0 5 1239 464 201 77 0 chr3 85766160 85766257 -73833526 - PB1D10 SINE Alu -35 114 4 5 1239 627 164 28 62 chr3 85766403 85766608 -73833175 - RLTR25A LTR ERVK 0 1103 898 5 1239 226 246 18 0 chr3 85766694 85766751 -73833032 - U7 snRNA snRNA -2 61 4 5 1239 3521 155 33 53 chr3 85766795 85767278 -73832505 - RLTR25A LTR ERVK -206 897 400 5 1239 1297 90 26 5 chr3 85767278 85767467 -73832316 - B2_Mm1t SINE B2 0 193 1 5 1239 3521 155 33 53 chr3 85767467 85767712 -73832071 - RLTR25A LTR ERVK -704 399 184 5 1239 941 34 0 0 chr3 85767712 85767830 -73831953 + IAPLTR2b LTR ERVK 1 118 -209 5 1239 3014 42 40 40 chr3 85767827 85768274 -73831509 + IAPLTR2_Mm LTR ERVK 29 475 0 5 1239 771 183 43 37 chr3 85768274 85768459 -73831324 - RLTR25A LTR ERVK -840 188 3 5 1239 2256 94 3 0 chr3 85768543 85768861 -73830922 - ORR1A2 LTR MaLR -8 319 1 5 1239 1247 41 0 0 chr3 85768909 85769056 -73830727 + B1_Mus2 SINE Alu 1 147 0 5 1239 180 0 0 0 chr3 85769056 85769076 -73830707 + (A)n Simple_repeat Simple_repeat 1 20 0 5 1239 723 243 42 16 chr3 85769145 85769337 -73830446 - B3A SINE B2 0 198 2 5 1239 351 265 208 71 chr3 85769412 85769595 -73830188 - B4A SINE B4 0 292 85 5 1239 841 206 74 44 chr3 85770123 85770303 -73829480 - B3 SINE B2 -5 211 23 5 1239 3048 123 48 16 chr3 85770303 85770808 -73828975 + RLTR28 LTR ERVL 1 521 -3 5 1239 841 206 74 44 chr3 85770808 85770830 -73828953 - B3 SINE B2 -194 22 3 5 1239 220 245 18 36 chr3 85770867 85770880 -73828903 - B4A SINE B4 -148 144 132 5 1239 1120 88 18 0 chr3 85770880 85771050 -73828733 + (TCCC)n Simple_repeat Simple_repeat 3 175 0 5 1239 240 35 0 0 chr3 85771050 85771079 -73828704 + (TTTC)n Simple_repeat Simple_repeat 4 32 0 5 1239 220 245 18 36 chr3 85771079 85771119 -73828664 - B4A SINE B4 -161 131 92 5 1239 590 150 38 30 chr3 85771192 85771323 -73828460 - Lx9 LINE L1 -2 7642 7511 5 1239 403 255 123 0 chr3 85771323 85771429 -73828354 - Lx9 LINE L1 -339 7305 7187 5 1239 821 61 0 0 chr3 85771437 85771551 -73828232 - B1_Mus1 SINE Alu 0 148 35 5 1239 436 292 68 36 chr3 85771710 85771930 -73827853 - RMER15 LTR ERVL -13 562 336 5 1239 207 100 0 0 chr3 85771960 85771990 -73827793 + (T)n Simple_repeat Simple_repeat 1 30 0 5 1239 1011 59 81 0 chr3 85771990 85772126 -73827657 - B1_Mus2 SINE Alu 0 147 1 5 1239 4346 68 52 0 chr3 85772288 85772843 -73826940 + MT2B2 LTR ERVL 1 584 0 5 1239 722 253 125 36 chr3 85774158 85774437 -73825346 - L1MC1 LINE L1 -5 6328 6025 5 1239 254 284 90 0 chr3 85774509 85774576 -73825207 + ID_B1 SINE B4 85 157 -67 5 1239 207 0 0 0 chr3 85774585 85774608 -73825175 + (TG)n Simple_repeat Simple_repeat 1 23 0 5 1239 302 100 17 0 chr3 85774608 85774668 -73825115 + (GA)n Simple_repeat Simple_repeat 2 62 0 5 1239 26 50 0 0 chr3 85775294 85775334 -73824449 + GC_rich Low_complexity Low_complexity 1 40 0 5 1239 207 0 0 0 chr3 85776322 85776345 -73823438 + (A)n Simple_repeat Simple_repeat 1 23 0 5 1239 180 0 0 0 chr3 85776397 85776417 -73823366 + (CCTG)n Simple_repeat Simple_repeat 3 22 0 5 1239 291 28 0 0 chr3 85777502 85777538 -73822245 + (TG)n Simple_repeat Simple_repeat 2 37 0 5 1239 225 255 20 0 chr3 85777542 85777593 -73822190 - ID SINE ID -153 71 20 5 1239 1043 80 0 21 chr3 85777655 85777795 -73821988 - B1_Mus2 SINE Alu -9 138 2 5 1239 253 324 17 51 chr3 85778780 85778897 -73820886 - MER5A DNA MER1_type -6 183 71 5 1239 391 214 136 0 chr3 85778944 85779047 -73820736 - RSINE1 SINE B4 -43 122 6 5 1239 227 250 39 65 chr3 85779373 85779450 -73820333 + MER81 DNA AcHobo 3 77 -37 5 1239 2419 247 100 57 chr3 85779651 85780583 -73819200 - RCHARR1 DNA MER1_type -2 972 1 5 1239 314 0 0 47 chr3 85780625 85780654 -73819129 + (TTTTTG)n Simple_repeat Simple_repeat 4 31 0 5 1239 1575 42 11 0 chr3 85780654 85780844 -73818939 - B2_Mm1a SINE B2 0 193 2 5 1239 314 0 0 47 chr3 85780844 85780857 -73818926 + (TTTTTG)n Simple_repeat Simple_repeat 3 15 0 5 1239 273 242 51 68 chr3 85780885 85781062 -73818721 - L1M5 LINE L1 -896 5250 5077 5 1239 201 262 0 0 chr3 85781386 85781428 -73818355 + (ATG)n Simple_repeat Simple_repeat 2 43 0 5 1239 882 180 107 15 chr3 85781430 85781627 -73818156 - B3 SINE B2 -1 215 1 5 1239 288 0 0 0 chr3 85781925 85781957 -73817826 + (CA)n Simple_repeat Simple_repeat 2 33 0 5 1239 505 271 133 26 chr3 85781957 85782113 -73817670 - B3 SINE B2 -18 198 26 5 1239 367 284 0 0 chr3 85782268 85782356 -73817427 - PB1D10 SINE Alu -13 104 17 5 1239 213 170 64 0 chr3 85782610 85782657 -73817126 - BC1_Mm scRNA scRNA -84 68 19 5 1239 456 279 83 31 chr3 85782673 85782865 -73816918 - L1MC3 LINE L1 -197 7588 7387 5 1239 198 0 0 0 chr3 85782881 85782903 -73816880 + (TCTG)n Simple_repeat Simple_repeat 3 24 0 5 1239 337 266 73 61 chr3 85782971 85783135 -73816648 - B4A SINE B4 -77 215 50 5 1239 750 259 55 23 chr3 85783467 85783556 -73816227 - ID_B1 SINE B4 0 224 136 5 1239 1131 109 0 0 chr3 85783556 85783721 -73816062 - L1_Mus1 LINE L1 0 6567 6403 5 1239 750 259 55 23 chr3 85783721 85783848 -73815935 - ID_B1 SINE B4 -89 135 2 5 1239 1002 173 28 6 chr3 85784510 85784690 -73815093 + B3 SINE B2 3 186 -30 5 1239 256 205 62 37 chr3 85784801 85784882 -73814901 - MTEa LTR MaLR -4 375 293 5 1239 1194 154 4 22 chr3 85785329 85785357 -73814426 + ORR1A4 LTR MaLR 46 68 -261 5 1239 1568 138 100 69 chr3 85785357 85785676 -73814107 + ORR1A4 LTR MaLR 1 329 0 5 1239 1194 154 4 22 chr3 85785676 85785872 -73813911 + ORR1A4 LTR MaLR 69 265 -64 5 1239 272 130 3 57 chr3 85785868 85785938 -73813845 + RMER16 LTR ERVK 11 66 -467 5 1239 246 81 0 0 chr3 85785954 85785991 -73813792 + (T)n Simple_repeat Simple_repeat 1 37 0 5 1239 1201 48 0 20 chr3 85785991 85786141 -73813642 - B1_Mus2 SINE Alu 0 147 1 5 1239 298 49 0 0 chr3 85786160 85786201 -73813582 + ORR1A4 LTR MaLR 281 321 -8 5 1239 713 246 99 0 chr3 85786286 85786457 -73813326 + B3 SINE B2 1 188 -28 5 1239 294 0 65 0 chr3 85786461 85786507 -73813276 + (CA)n Simple_repeat Simple_repeat 2 50 0 5 1239 1250 54 0 0 chr3 85787094 85787241 -73812542 + B1_Mus2 SINE Alu 1 147 0 5 1239 813 129 0 29 chr3 85787517 85787528 -73812255 - B1_Mur3 SINE Alu 0 149 142 5 1239 351 0 0 0 chr3 85787528 85787567 -73812216 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 5 1239 813 129 0 29 chr3 85787567 85787691 -73812092 - B1_Mur3 SINE Alu -8 141 18 5 1239 257 239 149 21 chr3 85787840 85787934 -73811849 - MER5A1 DNA MER1_type 0 166 61 5 1239 374 222 62 0 chr3 85787994 85788075 -73811708 - PB1 SINE Alu -17 110 25 5 1239 213 228 70 0 chr3 85788209 85788266 -73811517 - ID4_ SINE ID -21 62 2 5 1239 284 297 0 51 chr3 85788270 85788373 -73811410 - PB1 SINE Alu -7 120 23 5 1239 525 110 0 0 chr3 85788373 85788455 -73811328 + (TG)n Simple_repeat Simple_repeat 2 83 0 5 1239 284 297 0 51 chr3 85788455 85788468 -73811315 - PB1 SINE Alu -105 22 10 5 1239 343 232 24 0 chr3 85789063 85789145 -73810638 + B1F1 SINE Alu 6 89 -60 5 1239 315 0 0 0 chr3 85789148 85789183 -73810600 + (CA)n Simple_repeat Simple_repeat 1 35 0 5 1239 261 236 77 27 chr3 85789309 85789426 -73810357 + PB1 SINE Alu 4 127 0 5 1239 666 242 35 35 chr3 85789427 85789624 -73810159 + B3A SINE B2 2 198 0 5 1239 30 27 0 0 chr3 85789785 85789822 -73809961 + AT_rich Low_complexity Low_complexity 1 37 0 5 1239 763 203 35 0 chr3 85789833 85789976 -73809807 + B3 SINE B2 1 148 -68 5 1239 342 0 0 0 chr3 85789984 85790022 -73809761 + (CA)n Simple_repeat Simple_repeat 2 39 0 5 1239 1317 14 0 0 chr3 85790413 85790561 -73809222 + B1_Mus1 SINE Alu 1 148 0 5 1239 225 0 0 0 chr3 85790561 85790586 -73809197 + (A)n Simple_repeat Simple_repeat 1 25 0 5 1239 621 181 85 16 chr3 85791075 85791204 -73808579 + B1_Mur2 SINE Alu 5 142 -7 5 1239 588 171 170 7 chr3 85791439 85791592 -73808191 + MTD LTR MaLR 203 380 -39 5 1239 1049 190 28 23 chr3 85791611 85791826 -73807957 + B3 SINE B2 1 216 0 5 1239 3790 118 30 7 chr3 85792641 85793237 -73806546 - RLTR17 LTR ERVK -82 610 1 5 1239 402 302 39 32 chr3 85793240 85793252 -73806531 - B4A SINE B4 -55 237 196 5 1239 581 125 88 18 chr3 85793252 85793366 -73806417 - B1F2 SINE Alu -2 147 26 5 1239 402 302 39 32 chr3 85793366 85793394 -73806389 - B4A SINE B4 -55 195 83 5 1239 501 311 52 83 chr3 85793390 85793716 -73806067 - MLT1D LTR MaLR -187 318 3 5 1239 296 264 14 0 chr3 85795250 85795322 -73804461 - ID4 SINE ID -9 74 2 5 1239 210 299 99 40 chr3 85795718 85795819 -73803964 + L2c LINE L2 3273 3379 -8 5 1239 212 191 71 0 chr3 85796732 85796774 -73803009 - B4 SINE B4 -169 123 79 5 1239 664 176 132 23 chr3 85798388 85798562 -73801221 - L1M4 LINE L1 -1331 4815 4623 6 1239 222 278 14 14 chr3 85798679 85798752 -73801031 + CT-rich Low_complexity Low_complexity 4 76 0 6 1239 709 258 124 26 chr3 85798808 85799187 -73800596 - L1M4 LINE L1 -3061 3085 2670 6 1239 375 316 105 38 chr3 85799205 85799471 -73800312 + L1MEb LINE L1 71 354 -5716 6 1239 275 272 0 36 chr3 85799556 85799640 -73800143 - ID4 SINE ID -2 81 1 6 1239 361 116 208 42 chr3 85799708 85799780 -73800003 + Lx9 LINE L1 7335 7418 -226 6 1239 1620 42 0 0 chr3 85799825 85800017 -73799766 + B2_Mm1t SINE B2 1 192 -1 6 1239 1198 143 69 99 chr3 85800099 85800332 -73799451 + URR1A DNA MER1_type 1 226 0 6 1239 2407 196 101 5 chr3 85800382 85800955 -73798828 + Lx9 LINE L1 7016 7643 -1 6 1239 388 272 11 0 chr3 85801865 85801957 -73797826 + ID_B1 SINE B4 120 212 -12 6 1239 282 16 78 31 chr3 85802709 85802773 -73797010 + (TTTG)n Simple_repeat Simple_repeat 2 68 0 6 1239 1396 181 130 17 chr3 85802783 85803137 -73796646 + MTD LTR MaLR 13 406 -13 6 1239 234 299 67 61 chr3 85803248 85803412 -73796371 - HAL1 LINE L1 -420 2087 1923 6 1239 204 40 0 0 chr3 85803413 85803438 -73796345 + (CACCC)n Simple_repeat Simple_repeat 3 27 0 6 1239 312 280 46 62 chr3 85803588 85803782 -73796001 - HAL1 LINE L1 -829 1678 1488 6 1239 403 319 100 16 chr3 85803792 85804034 -73795749 - MLT1F2 LTR MaLR -2 651 326 6 1239 714 204 91 17 chr3 85804595 85804770 -73795013 - B2_Mm2 SINE B2 -7 188 1 6 1239 359 252 120 17 chr3 85805969 85806086 -73793697 - B1F SINE Alu 0 149 21 6 1239 192 220 100 0 chr3 85806175 85806225 -73793558 + L2a LINE L2 3301 3355 -71 6 1239 297 0 0 0 chr3 85806754 85806787 -73792996 + (CA)n Simple_repeat Simple_repeat 2 34 0 6 1239 276 309 25 0 chr3 85807548 85807629 -73792154 + ID4_ SINE ID 1 83 0 6 1239 442 157 60 0 chr3 85808900 85808983 -73790800 - B2_Mm2 SINE B2 -85 110 23 6 1239 238 242 123 61 chr3 85809370 85809539 -73790244 + MIR SINE MIR 81 268 0 6 1239 497 291 91 10 chr3 85809605 85809803 -73789980 - MER20 DNA MER1_type -1 218 5 6 1239 210 143 0 0 chr3 85809845 85809880 -73789903 + (CAT)n Simple_repeat Simple_repeat 2 36 0 6 1239 667 174 121 0 chr3 85809883 85810015 -73789768 - B1_Mus1 SINE Alu 0 148 1 6 1239 569 271 51 6 chr3 85810259 85810415 -73789368 + RSINE1 SINE B4 2 164 -1 6 1239 189 0 0 0 chr3 85810445 85810466 -73789317 + (TAA)n Simple_repeat Simple_repeat 2 22 0 6 1239 342 204 27 117 chr3 85810921 85811009 -73788774 + ID_B1 SINE B4 124 210 -14 6 1239 189 0 0 0 chr3 85811009 85811030 -73788753 + (CAAA)n Simple_repeat Simple_repeat 4 24 0 6 1239 342 204 27 117 chr3 85811030 85811052 -73788731 + ID_B1 SINE B4 211 224 0 6 1239 546 16 0 0 chr3 85811507 85811570 -73788213 + (CA)n Simple_repeat Simple_repeat 1 63 0 6 1239 4163 147 87 45 chr3 85811904 85812764 -73787019 - RMER19B LTR ERVK -6 896 1 6 1239 1871 109 12 41 chr3 85812799 85813148 -73786635 + Lx LINE L1 6272 6636 0 6 1239 402 21 0 0 chr3 85813503 85813550 -73786233 + (TG)n Simple_repeat Simple_repeat 2 48 0 6 1239 269 131 16 0 chr3 85813771 85813832 -73785951 + (TTTTG)n Simple_repeat Simple_repeat 1 62 0 6 1239 943 164 131 11 chr3 85814130 85814321 -73785462 - B3 SINE B2 -1 215 2 6 1239 1539 186 83 14 chr3 85815024 85815253 -73784530 + ORR1D1 LTR MaLR 1 228 -146 6 1239 186 43 0 0 chr3 85815253 85815276 -73784507 + (CCTG)n Simple_repeat Simple_repeat 4 26 0 6 1239 1539 186 83 14 chr3 85815276 85815396 -73784387 + ORR1D1 LTR MaLR 229 373 -1 6 1239 298 299 64 13 chr3 85815408 85815564 -73784219 + MLT1F1 LTR MaLR 73 236 -333 6 1239 248 259 134 25 chr3 85815669 85815788 -73783995 + MLT1F1 LTR MaLR 414 545 -24 6 1239 226 287 56 0 chr3 85816091 85816199 -73783584 - L1MA4 LINE L1 -5 6295 6182 6 1239 815 120 7 29 chr3 85817211 85817348 -73782435 + B1_Mus1 SINE Alu 14 147 -1 6 1239 1386 89 11 0 chr3 85817530 85817720 -73782063 - B2_Mm1t SINE B2 0 193 2 6 1239 224 180 32 16 chr3 85818066 85818128 -73781655 + B4A SINE B4 2 64 -228 6 1239 995 175 86 68 chr3 85819631 85819852 -73779931 - URR1B DNA MER1_type 0 225 1 6 1239 202 211 0 0 chr3 85820304 85820342 -73779441 - MIRm SINE MIR -114 162 125 6 1239 420 243 47 0 chr3 85820845 85820952 -73778831 + PB1D10 SINE Alu 1 112 -5 6 1239 1132 55 14 14 chr3 85821943 85822090 -73777693 + B1_Mus2 SINE Alu 1 147 0 6 1239 201 147 0 0 chr3 85822090 85822124 -73777659 + (GAAAA)n Simple_repeat Simple_repeat 3 36 0 6 1239 259 329 8 0 chr3 85822735 85822814 -73776969 - ID4_ SINE ID -63 89 8 6 1239 255 270 81 0 chr3 85822821 85822895 -73776888 - PB1 SINE Alu -2 125 46 6 1239 371 208 51 20 chr3 85823725 85823823 -73775960 + L1MB7 LINE L1 6073 6173 -11 6 1239 690 219 144 74 chr3 85824008 85824210 -73775573 + B3 SINE B2 1 216 0 6 1239 1162 56 0 0 chr3 85824529 85824671 -73775112 + B1_Mus1 SINE Alu 1 142 -6 6 1239 3034 240 87 35 chr3 85825229 85825658 -73774125 + RCHARR1 DNA MER1_type 8 476 -498 6 1239 810 197 62 29 chr3 85825658 85825867 -73773916 - B3 SINE B2 0 216 1 6 1239 3034 240 87 35 chr3 85825867 85826355 -73773428 + RCHARR1 DNA MER1_type 477 973 -1 6 1239 2390 74 48 3 chr3 85827356 85827669 -73772114 + ORR1A2 LTR MaLR 1 327 0 6 1239 935 186 116 31 chr3 85828404 85828704 -73771079 + ORR1D1 LTR MaLR 24 373 -1 6 1239 266 271 0 69 chr3 85829135 85829266 -73770517 + G-rich Low_complexity Low_complexity 1 122 0 6 1239 733 254 32 0 chr3 85829354 85829543 -73770240 + ORR1D2 LTR MaLR 38 232 -138 6 1239 203 261 0 0 chr3 85829679 85829725 -73770058 + (TG)n Simple_repeat Simple_repeat 1 46 0 6 1239 263 295 264 0 chr3 85829745 85829874 -73769909 - RSINE1 SINE B4 -2 163 1 6 1239 235 248 73 57 chr3 85829884 85830008 -73769775 - L1M4 LINE L1 -413 5771 5646 6 1239 1723 237 41 41 chr3 85830008 85830540 -73769243 + RMER5 LTR ERV1 1 532 -2 6 1239 900 237 14 19 chr3 85830544 85830759 -73769024 - L1M4 LINE L1 -532 5646 5433 6 1239 604 219 88 0 chr3 85831023 85831160 -73768623 + B1F SINE Alu 1 149 0 6 1239 960 203 88 5 chr3 85831612 85831805 -73767978 - B3 SINE B2 -7 209 1 6 1239 1339 29 92 17 chr3 85833841 85833985 -73765798 + B2_Mm2 SINE B2 1 144 -51 6 1239 387 0 0 0 chr3 85833985 85834028 -73765755 + (TG)n Simple_repeat Simple_repeat 2 44 0 6 1239 1339 29 92 17 chr3 85834028 85834056 -73765727 + B2_Mm2 SINE B2 145 186 -9 6 1239 453 154 51 0 chr3 85834273 85834351 -73765432 + B1_Mur2 SINE Alu 67 148 -1 6 1239 344 286 17 26 chr3 85834436 85834551 -73765232 + PB1D10 SINE Alu 4 117 0 6 1239 1214 61 0 0 chr3 85834906 85835054 -73764729 + B1_Mus1 SINE Alu 1 148 0 6 1239 737 223 69 65 chr3 85835775 85835813 -73763970 + B4A SINE B4 4 38 -254 6 1239 2201 112 12 6 chr3 85835813 85836138 -73763645 + ORR1A2 LTR MaLR 1 327 0 6 1239 737 223 69 65 chr3 85836138 85836315 -73763468 + B4A SINE B4 39 220 -72 6 1239 780 217 32 0 chr3 85836324 85836481 -73763302 + RSINE1 SINE B4 2 163 -2 6 1239 281 316 0 0 chr3 85836503 85836579 -73763204 + B4A SINE B4 217 292 0 6 1239 326 159 14 0 chr3 85836582 85836651 -73763132 + (CA)n Simple_repeat Simple_repeat 2 71 0 6 1239 401 298 96 65 chr3 85836659 85836889 -73762894 + MLT1D LTR MaLR 267 503 -2 6 1239 460 277 8 25 chr3 85836978 85837100 -73762683 + PB1 SINE Alu 3 122 -5 6 1239 516 171 93 19 chr3 85837104 85837211 -73762572 + PB1D10 SINE Alu 3 117 0 6 1239 697 296 28 25 chr3 85837215 85837499 -73762284 + B4A SINE B4 1 285 -7 6 1239 330 167 17 0 chr3 85837598 85837658 -73762125 + ID_B1 SINE B4 118 178 -46 6 1239 378 0 0 0 chr3 85837658 85837700 -73762083 + (CA)n Simple_repeat Simple_repeat 2 43 0 6 1239 338 191 0 93 chr3 85838356 85838431 -73761352 + ID4 SINE ID 16 83 0 6 1239 390 21 0 0 chr3 85838658 85838705 -73761078 + (TG)n Simple_repeat Simple_repeat 1 47 0 6 1239 471 222 28 9 chr3 85838705 85838807 -73760976 - RSINE1 SINE B4 -16 149 45 6 1239 555 16 0 0 chr3 85839547 85839611 -73760172 + (TG)n Simple_repeat Simple_repeat 1 64 0 6 1239 403 257 29 0 chr3 85839728 85839833 -73759950 + B1_Mur1 SINE Alu 36 143 -6 6 1239 210 37 0 0 chr3 85839833 85839860 -73759923 + (CA)n Simple_repeat Simple_repeat 2 28 0 6 1239 454 282 54 9 chr3 85839891 85840002 -73759781 + RSINE1 SINE B4 44 159 -6 6 1239 351 172 36 29 chr3 85840061 85840199 -73759584 + (CA)n Simple_repeat Simple_repeat 1 139 0 6 1239 1703 148 50 12 chr3 85840779 85841094 -73758689 + ORR1D1 LTR MaLR 2 328 -46 6 1239 1986 127 6 9 chr3 85841094 85841413 -73758370 + ORR1A3 LTR MaLR 1 318 -8 6 1239 1154 75 0 0 chr3 85841695 85841841 -73757942 + B1_Mus2 SINE Alu 2 147 0 6 1239 248 253 42 168 chr3 85843293 85843412 -73756371 + RSINE1 SINE B4 3 106 -59 6 1239 1312 57 102 0 chr3 85844046 85844223 -73755560 - B2_Mm2 SINE B2 0 195 1 6 1239 398 269 116 34 chr3 85845214 85845360 -73754423 - RSINE1 SINE B4 0 165 8 6 1239 823 188 0 39 chr3 85845383 85845538 -73754245 - B1_Mur3 SINE Alu 0 149 1 6 1239 22 0 0 0 chr3 85845756 85845778 -73754005 + AT_rich Low_complexity Low_complexity 1 22 0 6 1239 1944 42 0 75 chr3 85845907 85846188 -73753595 + L1Md_F3 LINE L1 6324 6583 -1 6 1239 290 237 10 0 chr3 85846398 85846495 -73753288 + (TG)n Simple_repeat Simple_repeat 1 98 0 6 1239 252 139 47 0 chr3 85846531 85846574 -73753209 + MT2_Mm LTR ERVL 449 493 0 6 1239 215 179 101 29 chr3 85846613 85846682 -73753101 + B4A SINE B4 1 74 -218 6 1239 309 274 12 3 chr3 85846708 85846807 -73752976 + B4A SINE B4 69 166 -126 6 1239 637 216 0 0 chr3 85846898 85847009 -73752774 - PB1D9 SINE Alu -9 111 1 6 1239 1359 93 0 45 chr3 85847366 85847568 -73752215 + B2_Mm2 SINE B2 1 193 -2 7 1239 431 238 50 0 chr3 85847617 85847718 -73752065 + PB1D10 SINE Alu 6 111 -6 7 1239 273 305 213 13 chr3 85848235 85848474 -73751309 - B4A SINE B4 -5 287 1 7 1239 238 294 96 21 chr3 85848556 85848650 -73751133 + L3 LINE CR1 4239 4339 -150 7 1239 2848 51 23 39 chr3 85849064 85849454 -73750329 - L1Md_F2 LINE L1 0 6582 6199 7 1239 257 276 0 95 chr3 85849455 85849539 -73750244 - PB1D10 SINE Alu -2 115 40 7 1239 826 256 75 66 chr3 85850214 85850601 -73749182 - MTE2a LTR MaLR -13 406 21 7 1239 916 229 142 8 chr3 85850600 85850860 -73748923 - ORR1D2 LTR MaLR -75 295 1 7 154 767 264 10 20 chr3 85852004 85852201 -73747582 + B3A SINE B2 1 195 -3 7 1240 253 59 0 0 chr3 85852507 85852541 -73747242 - ORR1B1 LTR MaLR -8 386 353 7 1240 703 76 0 0 chr3 85852542 85852634 -73747149 - L1_Mus1 LINE L1 -394 6173 6082 7 1240 1127 36 7 14 chr3 85852633 85852773 -73747010 + L1_Mus1 LINE L1 6166 6304 -263 7 1240 1252 45 0 0 chr3 85852773 85852928 -73746855 + L1_Mus1 LINE L1 6413 6567 0 7 1240 1457 142 40 152 chr3 85852937 85853312 -73746471 - ORR1B1 LTR MaLR -27 367 35 7 1240 229 307 53 0 chr3 85853998 85854073 -73745710 + L1M5 LINE L1 4858 4936 -1210 7 1240 315 0 0 0 chr3 85854199 85854234 -73745549 + (TATG)n Simple_repeat Simple_repeat 2 36 0 7 1240 4783 144 92 5 chr3 85854258 85855088 -73744695 - RMER19B LTR ERVK 0 902 1 7 1240 721 204 30 0 chr3 85855108 85855240 -73744543 - B3 SINE B2 -79 137 2 7 1240 793 98 16 0 chr3 85855517 85855639 -73744144 + B1_Mur3 SINE Alu 9 132 -17 7 1240 598 105 9 9 chr3 85855649 85855755 -73744028 + (GGAA)n Simple_repeat Simple_repeat 4 109 0 7 1240 234 273 52 0 chr3 85855945 85856022 -73743761 - MER31A LTR ERV1 -38 447 367 7 1240 23 54 0 0 chr3 85856110 85856147 -73743636 + AT_rich Low_complexity Low_complexity 1 37 0 7 1240 21 0 0 0 chr3 85856384 85856405 -73743378 + AT_rich Low_complexity Low_complexity 1 21 0 7 1240 21 0 0 0 chr3 85857596 85857617 -73742166 + AT_rich Low_complexity Low_complexity 1 21 0 7 1240 180 0 0 0 chr3 85858071 85858091 -73741692 + (TCCC)n Simple_repeat Simple_repeat 2 21 0 7 1240 27 0 0 0 chr3 85858726 85858753 -73741030 + AT_rich Low_complexity Low_complexity 1 27 0 7 1240 1416 75 11 5 chr3 85859118 85859306 -73740477 - B2_Mm2 SINE B2 -6 189 1 7 1240 351 0 0 0 chr3 85859821 85859860 -73739923 + (TAAA)n Simple_repeat Simple_repeat 4 42 0 7 1240 225 275 0 55 chr3 85859926 85859999 -73739784 + ID4_ SINE ID 6 74 -78 7 1240 310 313 61 0 chr3 85860271 85860402 -73739381 + MIR SINE MIR 40 178 -84 7 1240 516 283 77 35 chr3 85860483 85860671 -73739112 + B3A SINE B2 9 204 -12 7 1240 348 235 71 0 chr3 85860936 85861034 -73738749 - MLT2C1 LTR ERVL -290 107 3 7 1240 414 0 0 0 chr3 85861577 85861623 -73738160 + (CA)n Simple_repeat Simple_repeat 2 47 0 7 1240 270 0 0 0 chr3 85861673 85861703 -73738080 + (CA)n Simple_repeat Simple_repeat 2 31 0 7 1240 530 278 116 43 chr3 85862721 85862928 -73736855 - ID_B1 SINE B4 -2 222 1 7 1240 181 331 137 30 chr3 85863127 85863295 -73736488 + MIRb SINE MIR 13 198 -70 7 1240 436 151 0 14 chr3 85863922 85863996 -73735787 + RSINE1 SINE B4 59 131 -34 7 1240 443 274 113 82 chr3 85864410 85864692 -73735091 - B4A SINE B4 0 292 2 7 1240 1589 42 5 0 chr3 85864841 85865031 -73734752 + B2_Mm1t SINE B2 2 192 -1 7 1240 1015 121 62 11 chr3 85865215 85865391 -73734392 + B2_Mm2 SINE B2 1 185 -10 7 1240 621 159 9 0 chr3 85865508 85865615 -73734168 + B1F2 SINE Alu 35 142 -7 7 1240 22 0 0 0 chr3 85865682 85865704 -73734079 + AT_rich Low_complexity Low_complexity 1 22 0 7 1240 311 272 31 16 chr3 85865999 85866126 -73733657 - RSINE1 SINE B4 -35 130 2 7 1240 753 12 0 0 chr3 85867734 85867820 -73731963 + (TG)n Simple_repeat Simple_repeat 2 87 0 7 1240 599 291 109 30 chr3 85867992 85868258 -73731525 + MLT1A0 LTR MaLR 75 361 -4 7 1240 240 143 0 0 chr3 85868259 85868301 -73731482 + (CA)n Simple_repeat Simple_repeat 1 42 0 7 1240 564 193 48 35 chr3 85868402 85868547 -73731236 - B1F SINE Alu -2 147 1 7 1240 344 268 89 8 chr3 85868676 85868800 -73730983 + MER63D DNA AcHobo 335 468 -593 7 1240 569 255 38 25 chr3 85869218 85869375 -73730408 - RSINE1 SINE B4 -4 161 3 7 1240 863 228 38 19 chr3 85869730 85869940 -73729843 - B3 SINE B2 -2 214 1 7 1240 21 0 0 0 chr3 85869945 85869966 -73729817 + AT_rich Low_complexity Low_complexity 1 21 0 7 1240 1118 124 6 0 chr3 85869971 85870140 -73729643 + B2_Mm1t SINE B2 2 171 -22 7 1240 355 124 164 18 chr3 85870176 85870289 -73729494 + B2_Mm2 SINE B2 47 192 -1 7 1240 1107 101 0 0 chr3 85870297 85870455 -73729328 + B2_Mm2 SINE B2 1 158 -37 7 1240 306 50 0 0 chr3 85870456 85870496 -73729287 + (TAAA)n Simple_repeat Simple_repeat 3 42 0 7 1240 195 290 101 68 chr3 85870507 85870655 -73729128 - L2a LINE L2 -3 3423 3271 7 1240 596 268 131 5 chr3 85871149 85871340 -73728443 + B3 SINE B2 1 215 -1 7 1240 417 204 149 28 chr3 85871368 85871509 -73728274 + B3A SINE B2 2 159 -39 7 1240 381 22 0 0 chr3 85871514 85871560 -73728223 + (CA)n Simple_repeat Simple_repeat 1 46 0 7 1240 1209 98 17 23 chr3 85871579 85871756 -73728027 + B2_Mm2 SINE B2 1 176 -19 7 1240 381 149 167 78 chr3 85872141 85872243 -73727540 + PB1 SINE Alu 5 115 -12 7 1240 1222 62 0 0 chr3 85872266 85872412 -73727371 - B1_Mus2 SINE Alu 0 147 2 7 1240 715 219 180 0 chr3 85872466 85872644 -73727139 - B3 SINE B2 -6 210 1 7 1240 380 335 77 11 chr3 85873593 85873774 -73726009 - B4A SINE B4 -33 259 67 7 1240 920 201 57 24 chr3 85873898 85874107 -73725676 - B3 SINE B2 0 216 1 7 1240 233 314 14 0 chr3 85874773 85874785 -73724998 - ID4_ SINE ID -8 75 7 7 1240 244 286 0 0 chr3 85874785 85874841 -73724942 - tRNA-Ala-GCY_ tRNA tRNA -19 56 1 7 1240 542 162 19 9 chr3 85874852 85874958 -73724825 - PB1D10 SINE Alu -6 111 5 7 1240 440 259 8 43 chr3 85875710 85875827 -73723956 + ID_B1 SINE B4 3 115 -109 7 1240 376 327 9 0 chr3 85875907 85876020 -73723763 + ID_B1 SINE B4 110 223 -1 7 1240 344 281 125 24 chr3 85876490 85876658 -73723125 - Lx8 LINE L1 -3 7470 7286 7 1240 213 280 221 33 chr3 85876816 85876938 -73722845 - B1F1 SINE Alu -2 147 3 7 1240 604 299 34 17 chr3 85877122 85877299 -73722484 - ID_B1 SINE B4 0 224 45 7 1240 1350 176 165 6 chr3 85878027 85878203 -73721580 - ORR1C2 LTR MaLR -19 365 172 7 1240 207 0 0 0 chr3 85878203 85878226 -73721557 + (CAGA)n Simple_repeat Simple_repeat 3 25 0 7 1240 1350 176 165 6 chr3 85878226 85878364 -73721419 - ORR1C2 LTR MaLR -213 171 1 7 1240 378 0 0 0 chr3 85878374 85878416 -73721367 + (CATAC)n Simple_repeat Simple_repeat 3 44 0 7 1240 620 203 68 0 chr3 85879339 85879472 -73720311 + ID_B1 SINE B4 82 223 -1 7 1240 1084 192 34 5 chr3 85879583 85879792 -73719991 + B3 SINE B2 2 216 0 7 1240 869 97 72 29 chr3 85879858 85879996 -73719787 + B1_Mus1 SINE Alu 1 144 -4 7 1240 917 246 15 5 chr3 85881300 85881500 -73718283 + B3 SINE B2 2 203 -13 7 1240 520 136 0 37 chr3 85881500 85881607 -73718176 - B3 SINE B2 -113 103 1 7 1240 644 221 43 14 chr3 85881909 85882047 -73717736 - B1F1 SINE Alu -6 143 2 7 1240 22 35 0 0 chr3 85882427 85882456 -73717327 + AT_rich Low_complexity Low_complexity 1 29 0 7 1240 591 200 33 0 chr3 85883624 85883744 -73716039 - B1_Mur1 SINE Alu -22 127 4 7 1240 941 107 71 0 chr3 85884774 85884914 -73714869 + B1_Mur4 SINE Alu 1 150 0 7 1240 234 0 0 0 chr3 85884916 85884942 -73714841 + (TG)n Simple_repeat Simple_repeat 1 26 0 7 1240 294 29 0 0 chr3 85884942 85884976 -73714807 + (GA)n Simple_repeat Simple_repeat 1 35 0 7 1240 211 225 22 0 chr3 85885001 85885038 -73714745 + (TAGA)n Simple_repeat Simple_repeat 4 41 0 7 1240 279 0 0 0 chr3 85885038 85885069 -73714714 + (TGAA)n Simple_repeat Simple_repeat 2 32 0 7 1240 211 225 22 0 chr3 85885069 85885120 -73714663 + (TAGA)n Simple_repeat Simple_repeat 2 53 0 7 1240 912 135 165 16 chr3 85885183 85885371 -73714412 + B3 SINE B2 1 216 0 7 1240 517 176 126 0 chr3 85885438 85885557 -73714226 - B1F SINE Alu -14 135 2 7 1240 344 293 91 0 chr3 85885564 85885709 -73714074 + MIRb SINE MIR 32 192 -76 7 1240 265 333 24 0 chr3 85885904 85885988 -73713795 - MIRc SINE MIR -98 170 85 7 1240 1046 115 0 7 chr3 85886041 85886190 -73713593 + B1_Mur2 SINE Alu 1 148 -1 7 1240 1206 65 12 0 chr3 85886193 85886361 -73713422 + B2_Mm1t SINE B2 2 171 -22 7 1240 361 74 19 0 chr3 85886396 85886450 -73713333 + B2_Mm2 SINE B2 47 101 -94 7 1240 298 229 60 0 chr3 85890117 85890200 -73709583 + PB1D10 SINE Alu 30 117 0 7 1240 810 141 0 0 chr3 85890541 85890711 -73709072 + (TG)n Simple_repeat Simple_repeat 2 171 0 7 1240 234 220 169 0 chr3 85890739 85890798 -73708985 - ID SINE ID -155 69 1 7 1240 235 94 0 0 chr3 85891050 85891082 -73708701 + PB1D9 SINE Alu 2 33 -87 7 1240 929 54 130 8 chr3 85891197 85891328 -73708455 + B1_Mm SINE Alu 1 147 0 7 1240 1916 166 16 22 chr3 85893286 85893649 -73706134 - ORR1D1 LTR MaLR 0 374 14 7 1240 21 0 0 0 chr3 85893783 85893804 -73705979 + AT_rich Low_complexity Low_complexity 1 21 0 7 1240 791 233 28 6 chr3 85893817 85893994 -73705789 + ID_B1 SINE B4 1 181 -43 7 1240 1165 63 0 0 chr3 85894154 85894297 -73705486 - B1_Mus2 SINE Alu 0 147 5 8 1240 1086 76 14 0 chr3 85894409 85894553 -73705230 + B1_Mus2 SINE Alu 1 146 -1 8 1240 253 250 0 0 chr3 85894603 85894617 -73705166 - B4 SINE B4 -156 136 86 8 1240 278 54 0 0 chr3 85894617 85894654 -73705129 - B1_Mus2 SINE Alu -110 37 1 8 1240 217 286 28 75 chr3 85894676 85894782 -73705001 - PB1D7 SINE Alu 0 120 20 8 1240 23 0 0 0 chr3 85895094 85895117 -73704666 + AT_rich Low_complexity Low_complexity 1 23 0 8 1240 603 158 20 10 chr3 85895164 85895266 -73704517 - PB1D9 SINE Alu -17 103 1 8 1240 682 294 115 0 chr3 85896065 85896317 -73703466 - B4A SINE B4 -10 282 2 8 1240 614 317 26 81 chr3 85896348 85896657 -73703126 + B4A SINE B4 1 292 0 8 1240 640 261 125 21 chr3 85896675 85896867 -73702916 - B3 SINE B2 -3 213 2 8 1240 1031 63 192 19 chr3 85898720 85898881 -73700902 - B2_Mm1a SINE B2 -4 189 1 8 1240 726 324 70 17 chr3 85898917 85899218 -73700565 - MER68 LTR ERVL -11 552 236 8 1240 921 136 7 26 chr3 85899308 85899459 -73700324 + B1_Mur4 SINE Alu 3 150 0 8 1240 342 143 26 13 chr3 85899459 85899537 -73700246 + A-rich Low_complexity Low_complexity 2 80 0 8 1240 794 233 69 5 chr3 85899859 85900062 -73699721 - B3 SINE B2 0 216 1 8 1240 4231 48 2 17 chr3 85900122 85900654 -73699129 + L1Md_F2 LINE L1 6059 6582 0 8 1240 427 306 20 0 chr3 85901659 85901806 -73697977 + MER3 DNA MER1_type 43 192 -17 8 1240 40 67 0 0 chr3 85902544 85902619 -73697164 + AT_rich Low_complexity Low_complexity 1 75 0 8 1240 1956 133 16 0 chr3 85903855 85904171 -73695612 + ORR1A4 LTR MaLR 1 321 -8 8 1240 296 340 9 9 chr3 85904248 85904358 -73695425 + PB1D10 SINE Alu 3 112 -5 8 1240 690 13 0 0 chr3 85905717 85905796 -73693987 + (GAAA)n Simple_repeat Simple_repeat 2 80 0 8 1240 195 69 0 0 chr3 85905796 85905824 -73693959 + (CAAGA)n Simple_repeat Simple_repeat 2 30 0 8 1240 565 155 0 0 chr3 85906381 85906478 -73693305 + B3 SINE B2 110 206 -10 8 1240 527 201 41 41 chr3 85906506 85906615 -73693168 + B1_Mur1 SINE Alu 3 116 -33 8 1240 288 77 0 0 chr3 85906615 85906654 -73693129 + (TATATG)n Simple_repeat Simple_repeat 1 39 0 8 1240 527 184 42 42 chr3 85906654 85906681 -73693102 + B1_Mur1 SINE Alu 117 139 -10 8 1240 687 133 0 0 chr3 85907816 85907944 -73691839 + (TG)n Simple_repeat Simple_repeat 2 129 0 8 1240 1211 55 0 0 chr3 85908348 85908494 -73691289 - B1_Mus2 SINE Alu 0 147 2 8 1240 512 220 59 30 chr3 85908590 85908768 -73691015 + B3A SINE B2 1 193 -2 8 1240 3541 13 0 0 chr3 85909335 85909728 -73690055 + L1Md_A LINE L1 6189 6581 -1 8 1240 234 231 12 60 chr3 85909924 85910007 -73689776 - MIR SINE MIR -82 180 102 8 1240 518 109 287 0 chr3 85911682 85911783 -73688000 + B1_Mm SINE Alu 12 141 -6 8 1240 211 234 21 0 chr3 85911783 85911830 -73687953 + GA-rich Low_complexity Low_complexity 2 49 0 8 1240 271 304 50 29 chr3 85911838 85911977 -73687806 + ID_B1 SINE B4 82 223 -1 8 1240 3821 97 82 53 chr3 85912132 85912852 -73686931 + RMER6A LTR ERVK 16 756 0 8 1240 294 237 13 0 chr3 85913856 85913932 -73685851 + L1MB8 LINE L1 5934 6010 -168 8 1240 22 0 0 0 chr3 85914542 85914564 -73685219 + AT_rich Low_complexity Low_complexity 1 22 0 8 1240 213 39 0 0 chr3 85915517 85915543 -73684240 + (GA)n Simple_repeat Simple_repeat 2 27 0 8 1240 204 125 0 0 chr3 85915707 85915739 -73684044 + (ATG)n Simple_repeat Simple_repeat 1 32 0 8 1240 447 281 44 15 chr3 85915779 85915916 -73683867 + B1F1 SINE Alu 3 143 -6 8 1240 311 195 132 12 chr3 85915918 85916001 -73683782 + B1_Mur2 SINE Alu 1 93 -56 8 1240 787 189 156 32 chr3 85916588 85916774 -73683009 + B3 SINE B2 1 209 -7 8 1240 1281 54 60 0 chr3 85917292 85917460 -73682323 + B2_Mm1t SINE B2 1 178 -15 8 1240 438 46 304 0 chr3 85917488 85917599 -73682184 + B2_Mm2 SINE B2 46 195 0 8 1240 368 203 34 34 chr3 85920429 85920553 -73679230 - PB1D7 SINE Alu -20 129 1 8 1240 228 233 0 0 chr3 85920937 85920980 -73678803 + ZP3AR Satellite Satellite 25 67 -145 8 1240 600 255 54 0 chr3 85920955 85921104 -73678679 + B3A SINE B2 1 157 -41 8 1240 297 0 0 0 chr3 85921107 85921140 -73678643 + (T)n Simple_repeat Simple_repeat 1 33 0 8 1240 721 199 12 117 chr3 85921150 85921190 -73678593 + B3 SINE B2 1 33 -183 8 1240 1626 52 0 0 chr3 85921190 85921383 -73678400 + B2_Mm1a SINE B2 1 193 0 8 1240 721 199 12 117 chr3 85921383 85921513 -73678270 + B3 SINE B2 34 153 -63 8 1240 189 107 0 0 chr3 85921855 85921883 -73677900 + (TG)n Simple_repeat Simple_repeat 2 29 0 8 1240 3030 12 0 0 chr3 85921883 85922211 -73677572 - MERVL-int LTR ERVL -1931 3554 3227 8 1240 372 43 0 0 chr3 85922240 85922286 -73677497 + (TA)n Simple_repeat Simple_repeat 2 47 0 8 1240 267 31 0 0 chr3 85922306 85922338 -73677445 + (GAAA)n Simple_repeat Simple_repeat 4 35 0 8 1240 218 278 0 65 chr3 85922591 85922668 -73677115 + BC1_Mm scRNA scRNA 15 86 -66 8 1240 1195 35 0 0 chr3 85923801 85923943 -73675840 + B1_Mus1 SINE Alu 2 143 -5 8 1240 351 0 0 0 chr3 85923946 85923985 -73675798 + (GA)n Simple_repeat Simple_repeat 2 40 0 8 1240 1196 41 0 13 chr3 85924143 85924292 -73675491 - B1_Mus2 SINE Alu 0 147 1 8 1240 396 254 14 0 chr3 85925447 85925540 -73674243 - PB1D7 SINE Alu -23 104 2 8 1240 1284 122 16 0 chr3 85925568 85925757 -73674026 - B2_Mm1t SINE B2 0 193 2 8 1240 261 0 0 0 chr3 85925761 85925790 -73673993 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 8 1240 406 198 11 23 chr3 85926053 85926141 -73673642 - B1_Mur3 SINE Alu -51 98 12 8 1240 944 186 29 34 chr3 85926175 85926381 -73673402 - B3 SINE B2 -4 212 8 8 1240 555 164 29 15 chr3 85926395 85926531 -73673252 + CT-rich Low_complexity Low_complexity 1 138 0 8 1240 745 186 109 92 chr3 85926784 85926968 -73672815 - B3A SINE B2 -8 187 1 8 1240 986 152 0 7 chr3 85928981 85929127 -73670656 - B1_Mus1 SINE Alu -2 146 2 8 1240 2311 114 110 13 chr3 85929128 85929510 -73670273 + MTC LTR MaLR 3 421 0 8 1240 490 285 141 24 chr3 85929563 85929818 -73669965 + B4A SINE B4 5 289 -3 8 1240 216 296 0 0 chr3 85930130 85930184 -73669599 + MIRm SINE MIR 220 273 -3 8 1240 265 278 11 54 chr3 85932862 85932949 -73666834 - ORR1E LTR MaLR -14 365 287 8 1240 233 259 0 17 chr3 85933018 85933077 -73666706 + A-rich Low_complexity Low_complexity 2 59 0 8 1240 607 266 42 26 chr3 85934058 85934251 -73665532 + B3A SINE B2 3 198 0 8 1240 423 0 0 0 chr3 85934472 85934519 -73665264 + (TG)n Simple_repeat Simple_repeat 2 48 0 8 1240 599 234 31 0 chr3 85934519 85934647 -73665136 - B3 SINE B2 -84 132 1 8 1240 396 261 67 34 chr3 85934676 85934795 -73664988 + ID_B1 SINE B4 82 204 -20 8 1240 781 146 80 0 chr3 85934802 85934939 -73664844 - URR1A DNA MER1_type 0 226 79 8 1240 248 237 131 20 chr3 85935223 85935322 -73664461 - PB1D7 SINE Alu -10 110 1 8 1240 847 162 7 7 chr3 85935400 85935543 -73664240 + B1_Mur3 SINE Alu 3 145 -4 8 1240 360 267 132 9 chr3 85935733 85935839 -73663944 + ID_B1 SINE B4 87 205 -19 8 1240 2536 85 99 3 chr3 85935897 85936262 -73663521 - MTB LTR MaLR 0 400 1 8 1240 560 214 0 5 chr3 85936472 85936610 -73663173 + B1F SINE Alu 23 149 0 8 1240 260 222 71 36 chr3 85936610 85936694 -73663089 + MT2B LTR ERVL 154 240 -361 8 1240 606 145 62 31 chr3 85936627 85936755 -73663028 + B1_Mur2 SINE Alu 11 142 -7 8 1240 821 230 128 61 chr3 85937494 85937642 -73662141 - ORR1D1 LTR MaLR -3 371 222 8 1240 1204 41 7 0 chr3 85937642 85937788 -73661995 - B1_Mus2 SINE Alu 0 147 1 8 1240 821 230 128 61 chr3 85937788 85937982 -73661801 - ORR1D1 LTR MaLR -153 221 6 8 1240 306 270 53 142 chr3 85938283 85938325 -73661458 - RMER15 LTR ERVL -122 453 412 8 1240 1241 54 0 0 chr3 85938325 85938473 -73661310 + B1_Mus1 SINE Alu 1 148 0 8 1240 306 270 53 142 chr3 85938473 85938620 -73661163 - RMER15 LTR ERVL -164 411 281 8 1240 307 210 135 56 chr3 85938646 85938772 -73661011 - RMER15 LTR ERVL -418 157 22 8 1240 688 229 119 5 chr3 85938968 85939161 -73660622 - B3 SINE B2 0 216 2 8 1240 317 261 82 88 chr3 85939320 85939467 -73660316 - LTR40c LTR ERVL -312 153 8 8 1240 259 259 146 18 chr3 85939531 85939641 -73660142 - HERVL40-int LTR ERVL -79 5451 5328 8 1240 462 290 57 34 chr3 85940254 85940429 -73659354 + B3 SINE B2 38 216 0 8 1240 192 40 0 0 chr3 85941391 85941416 -73658367 + (CA)n Simple_repeat Simple_repeat 1 25 0 8 1240 235 282 0 22 chr3 85941416 85941486 -73658297 + BC1_Mm scRNA scRNA 16 80 -3 8 1240 239 138 322 33 chr3 85941541 85941631 -73658152 - URR1B DNA MER1_type 0 225 110 8 1240 250 178 200 53 chr3 85942129 85942224 -73657559 + B3A SINE B2 6 114 -84 8 1240 351 0 0 0 chr3 85942253 85942292 -73657491 + (CA)n Simple_repeat Simple_repeat 2 40 0 8 1240 318 197 30 0 chr3 85943219 85943285 -73656498 - PB1D9 SINE Alu -6 114 47 8 1240 236 192 0 37 chr3 85943544 85943557 -73656226 + A-rich Low_complexity Low_complexity 1 12 0 8 1240 1128 88 0 0 chr3 85943557 85943704 -73656079 + B1_Mus2 SINE Alu 1 147 0 8 1240 236 192 0 37 chr3 85943704 85943744 -73656039 + A-rich Low_complexity Low_complexity 13 52 0 8 1240 1294 83 56 0 chr3 85943952 85944132 -73655651 - B2_Mm2 SINE B2 -4 191 2 8 1240 231 311 0 0 chr3 85944376 85944437 -73655346 + PB1D9 SINE Alu 2 62 -58 9 1240 241 246 15 15 chr3 85944954 85945020 -73654763 + ID SINE ID 9 74 -150 9 1240 215 294 155 58 chr3 85946822 85946977 -73652806 + MIRb SINE MIR 27 196 -72 9 1240 290 245 143 0 chr3 85947060 85947158 -73652625 + B1F SINE Alu 18 129 -20 9 1240 180 176 0 0 chr3 85947182 85947216 -73652567 + (CATATA)n Simple_repeat Simple_repeat 2 35 0 9 1240 307 250 0 52 chr3 85947251 85947348 -73652435 - RSINE1 SINE B4 0 165 74 9 1240 211 179 0 0 chr3 85947441 85947480 -73652303 - RSINE1 SINE B4 -126 39 1 9 1240 752 186 0 23 chr3 85947748 85947880 -73651903 - B3 SINE B2 -86 130 2 9 1240 308 333 0 9 chr3 85947947 85948059 -73651724 - PB1D10 SINE Alu -6 111 1 9 1240 407 193 114 0 chr3 85948423 85948511 -73651272 + B1F1 SINE Alu 1 98 -51 9 1240 405 0 0 0 chr3 85948618 85948663 -73651120 + (TG)n Simple_repeat Simple_repeat 2 46 0 9 1240 241 299 91 11 chr3 85948724 85948812 -73650971 - PB1 SINE Alu -4 123 29 9 1240 357 242 170 110 chr3 85949719 85949801 -73649982 + ID_B1 SINE B4 2 103 -121 9 1240 708 168 84 0 chr3 85949801 85949932 -73649851 + B1_Mur4 SINE Alu 3 144 -6 9 1240 195 42 0 0 chr3 85949938 85949962 -73649821 + (GGA)n Simple_repeat Simple_repeat 3 26 0 9 1240 357 242 170 110 chr3 85949962 85950072 -73649711 + ID_B1 SINE B4 104 213 -11 9 1240 684 165 17 0 chr3 85950070 85950185 -73649598 + B1_Mur1 SINE Alu 20 136 -13 9 1240 1048 59 59 0 chr3 85950253 85950388 -73649395 - B1_Mus1 SINE Alu -1 147 5 9 1240 217 106 0 78 chr3 85950485 85950497 -73649286 + A-rich Low_complexity Low_complexity 2 13 0 9 1240 1233 41 0 0 chr3 85950497 85950644 -73649139 + B1_Mm SINE Alu 1 147 0 9 1240 217 106 0 78 chr3 85950644 85950682 -73649101 + A-rich Low_complexity Low_complexity 14 48 0 9 1240 3955 228 72 32 chr3 85950700 85951693 -73648090 - Lx7 LINE L1 -542 7154 6122 9 1240 1144 64 0 0 chr3 85951701 85951842 -73647941 - B1_Mus1 SINE Alu -3 145 5 9 1240 409 236 48 60 chr3 85951876 85951892 -73647891 - L1_Mur3 LINE L1 -602 5275 5260 9 1240 3469 62 2 20 chr3 85951892 85952241 -73647542 - L1Md_F2 LINE L1 0 6582 6237 9 1240 4436 8 0 0 chr3 85952241 85952723 -73647060 - LTRIS_Mm LTR ERV1 0 482 1 9 1240 3469 62 2 20 chr3 85952723 85952833 -73646950 - L1Md_F2 LINE L1 -346 6236 6131 9 1240 611 181 21 67 chr3 85952833 85952871 -73646912 - L1_Mur3 LINE L1 -618 5259 5215 9 1240 1914 147 58 50 chr3 85952871 85953251 -73646532 - ORR1C2 LTR MaLR 0 384 2 9 1240 611 180 20 67 chr3 85953251 85953362 -73646421 - L1_Mur3 LINE L1 -660 5220 5112 9 1240 202 128 0 25 chr3 85953376 85953416 -73646367 + A-rich Low_complexity Low_complexity 2 40 0 9 1240 204 40 0 0 chr3 85954137 85954162 -73645621 + (CCCCCA)n Simple_repeat Simple_repeat 5 29 0 9 1240 497 226 8 42 chr3 85954210 85954330 -73645453 + L1_Mur3 LINE L1 5113 5228 -652 9 1240 181 30 29 57 chr3 85954905 85954940 -73644843 + (TTTTTG)n Simple_repeat Simple_repeat 3 36 0 9 1240 214 300 78 20 chr3 85954945 85955047 -73644736 - B1F SINE Alu -40 109 2 9 1240 510 178 29 19 chr3 85955382 85955485 -73644298 + B1_Mus2 SINE Alu 1 104 -43 9 1240 23 33 0 0 chr3 85955661 85955691 -73644092 + AT_rich Low_complexity Low_complexity 1 30 0 9 1240 646 237 30 0 chr3 85955691 85955826 -73643957 + B1_Mur1 SINE Alu 2 140 -9 9 1240 5962 97 2 44 chr3 85956030 85956646 -73643137 + L1_Mus1 LINE L1 4345 4934 -949 9 1240 1535 43 16 5 chr3 85956646 85956833 -73642950 - B2_Mm2 SINE B2 -5 190 2 9 1240 5962 97 2 44 chr3 85956833 85957109 -73642674 + L1_Mus1 LINE L1 4935 5200 -683 9 1240 42110 4 0 0 chr3 85957105 85963473 -73636310 - L1Md_A LINE L1 0 6582 214 9 1240 8282 50 5 1 chr3 85963474 85964850 -73634933 + L1_Mus1 LINE L1 5187 6567 0 9 1240 225 299 39 13 chr3 85964912 85964990 -73634793 + ID_B1 SINE B4 80 159 -65 9 1240 961 189 92 0 chr3 85965133 85965339 -73634444 - RLTR42 LTR ERVK -14 225 1 9 1240 4072 164 76 24 chr3 85965339 85966142 -73633641 - RLTR42-int LTR ERVK 0 5522 4678 9 1240 8748 141 70 48 chr3 85966144 85966607 -73633176 - RLTR42-int LTR ERVK -1046 4476 4005 9 1240 1173 55 0 14 chr3 85966607 85966755 -73633028 + B1_Mus2 SINE Alu 2 147 0 9 1240 8748 141 70 48 chr3 85966755 85967220 -73632563 - RLTR42-int LTR ERVK -1518 4004 3556 9 1240 1086 44 73 0 chr3 85967220 85967357 -73632426 - B1_Mus2 SINE Alu 0 147 1 9 1240 8748 141 70 48 chr3 85967357 85968166 -73631617 - RLTR42-int LTR ERVK -1967 3555 2699 9 1240 527 190 116 39 chr3 85968186 85968367 -73631416 + RLTR15 LTR ERVK 33 227 -132 9 1240 247 290 117 27 chr3 85968364 85968552 -73631231 + RLTR15 LTR ERVK 134 338 -21 9 1240 21 0 0 0 chr3 85968558 85968579 -73631204 + AT_rich Low_complexity Low_complexity 1 21 0 9 1240 1498 133 129 0 chr3 85968581 85968836 -73630947 - RLTR42-int LTR ERVK -2817 2705 2418 9 1240 544 230 14 28 chr3 85968911 85969054 -73630729 - ID_B1 SINE B4 -83 141 1 9 1240 580 310 56 5 chr3 85969221 85969419 -73630364 - Charlie10b DNA MER1_type -23 219 12 9 1240 802 125 7 13 chr3 85969510 85969664 -73630119 + (TTCC)n Simple_repeat Simple_repeat 1 153 0 9 1240 278 262 0 15 chr3 85969798 85969864 -73629919 + CT-rich Low_complexity Low_complexity 2 66 0 9 1240 1418 65 21 11 chr3 85970050 85970237 -73629546 + B2_Mm2 SINE B2 2 190 -5 9 1240 234 174 188 138 chr3 85971618 85971698 -73628085 - B1_Mur4 SINE Alu -34 116 9 9 1240 1065 124 0 0 chr3 85971776 85971921 -73627862 - B1_Mur4 SINE Alu -5 145 1 9 1240 385 301 146 0 chr3 85972021 85972144 -73627639 + ID_B1 SINE B4 82 222 -2 9 1240 410 188 0 0 chr3 85972316 85972385 -73627398 - ID_B1 SINE B4 -68 156 88 9 1240 306 289 97 24 chr3 85972592 85972730 -73627053 + MIRc SINE MIR 38 182 -86 9 1240 23 33 0 0 chr3 85972811 85972841 -73626942 + AT_rich Low_complexity Low_complexity 1 30 0 9 1240 270 314 177 46 chr3 85973559 85973926 -73625857 - MER74B LTR ERVL -137 485 71 9 1240 484 307 43 0 chr3 85974108 85974248 -73625535 + ID_B1 SINE B4 11 156 -68 9 1240 1350 95 26 0 chr3 85974248 85974437 -73625346 + B2_Mm2 SINE B2 2 195 0 9 1240 419 191 216 9 chr3 85974511 85974627 -73625156 + B1F2 SINE Alu 10 149 0 9 1240 939 206 48 24 chr3 85974742 85974951 -73624832 - B3 SINE B2 -1 215 2 9 1240 522 190 9 48 chr3 85975033 85975138 -73624645 + RMER1B Other Other 612 712 -354 9 1240 262 387 18 18 chr3 85975318 85975431 -73624352 + RMER1C Other Other 29 141 -1201 9 1240 756 300 109 11 chr3 85975460 85975726 -73624057 + RMER1C Other Other 369 660 -682 9 1240 1977 150 77 18 chr3 85975728 85976019 -73623764 - MTC LTR MaLR -8 413 96 9 1240 279 0 0 0 chr3 85976019 85976050 -73623733 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 9 1240 1174 29 0 0 chr3 85976050 85976186 -73623597 - B1_Mus2 SINE Alu -11 136 1 9 1240 1977 150 77 18 chr3 85976186 85976281 -73623502 - MTC LTR MaLR -326 95 4 9 1240 932 322 17 3 chr3 85976283 85976573 -73623210 + RMER1C Other Other 469 762 -580 9 1240 380 216 50 75 chr3 85976884 85977004 -73622779 + ID_B1 SINE B4 103 219 -5 9 1240 644 211 65 7 chr3 85977037 85977190 -73622593 + L1M4 LINE L1 3513 3674 -2472 9 1240 2175 75 4 0 chr3 85977322 85977601 -73622182 + L1_Mus2 LINE L1 6286 6565 -1 9 1240 241 154 165 82 chr3 85977960 85978045 -73621738 - B4A SINE B4 -78 214 123 9 1240 3035 100 48 71 chr3 85978090 85978652 -73621131 - RMER2 LTR ERV1 0 567 19 9 1240 1189 57 0 0 chr3 85978694 85978834 -73620949 + B1_Mus1 SINE Alu 1 140 -8 9 1240 308 43 22 0 chr3 85978834 85978880 -73620903 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 9 1240 228 67 0 0 chr3 85978936 85978966 -73620817 + (A)n Simple_repeat Simple_repeat 1 30 0 9 1240 230 302 0 16 chr3 85978989 85979053 -73620730 - B3A SINE B2 -135 63 1 9 1240 340 268 0 100 chr3 85979113 85979246 -73620537 + B1_Mus1 SINE Alu 24 144 -5 9 1240 738 237 95 21 chr3 85979262 85979452 -73620331 + B3 SINE B2 5 208 -8 9 1240 356 134 108 12 chr3 85979472 85979555 -73620228 + L1M4 LINE L1 4280 4370 -1776 9 1240 678 113 0 0 chr3 85979566 85979672 -73620111 + B2_Mm2 SINE B2 2 107 -88 9 1240 569 191 9 9 chr3 85980372 85980483 -73619300 + B1_Mur2 SINE Alu 38 148 -1 9 1240 1015 234 19 83 chr3 85980483 85980846 -73618937 + Lx7 LINE L1 7215 7554 -142 9 1240 393 75 0 0 chr3 85980846 85980899 -73618884 + (TCCC)n Simple_repeat Simple_repeat 3 55 0 9 1240 352 103 334 0 chr3 85980928 85981019 -73618764 - B1_Mus1 SINE Alu -12 135 19 9 1240 466 93 0 40 chr3 85981034 85981135 -73618648 + (CAGAGA)n Simple_repeat Simple_repeat 2 98 0 9 1240 391 191 33 50 chr3 85981135 85981256 -73618527 + Lx7 LINE L1 7578 7696 0 9 1240 207 0 0 0 chr3 85981269 85981292 -73618491 + (TG)n Simple_repeat Simple_repeat 2 24 0 9 1240 237 263 0 26 chr3 85981368 85981446 -73618337 + L1M3 LINE L1 5654 5729 -451 9 1240 612 217 14 28 chr3 85981859 85982001 -73617782 + B3 SINE B2 71 210 -6 9 1240 1636 42 0 0 chr3 85982176 85982369 -73617414 - B2_Mm1a SINE B2 0 193 1 9 1240 1302 101 27 0 chr3 85982469 85982657 -73617126 + B2_Mm1a SINE B2 1 193 0 9 1240 258 230 81 0 chr3 85982777 85982851 -73616932 - AluG_3 SINE Alu -96 215 149 9 1240 2785 3 0 0 chr3 85982883 85983188 -73616595 + L1Md_A LINE L1 6278 6582 0 9 1241 368 294 63 146 chr3 85983297 85983584 -73616199 - B4 SINE B4 -2 290 28 9 1241 378 298 28 28 chr3 85983625 85983770 -73616013 - B1F SINE Alu 0 149 5 9 1241 228 250 0 0 chr3 85984120 85984184 -73615599 + (TA)n Simple_repeat Simple_repeat 2 65 0 9 1241 895 217 39 15 chr3 85984191 85984397 -73615386 - B3 SINE B2 -5 211 1 9 1241 390 21 0 0 chr3 85985445 85985492 -73614291 + (CA)n Simple_repeat Simple_repeat 1 47 0 9 1241 524 261 124 5 chr3 85985501 85985686 -73614097 - ID_B1 SINE B4 -10 214 8 9 1241 580 237 9 0 chr3 85986088 85986202 -73613581 + PB1D9 SINE Alu 1 115 -5 9 1241 390 42 0 0 chr3 85986205 85986253 -73613530 + (GA)n Simple_repeat Simple_repeat 1 48 0 9 1241 572 125 10 0 chr3 85986247 85986343 -73613440 + (GGAAA)n Simple_repeat Simple_repeat 2 98 0 9 1241 213 100 0 0 chr3 85986343 85986373 -73613410 + (GGAA)n Simple_repeat Simple_repeat 1 30 0 1 1241 1126 55 172 0 chr3 85986374 85986537 -73613246 + B2_Mm2 SINE B2 3 193 -2 1 1241 208 140 0 57 chr3 85986544 85986597 -73613186 + A-rich Low_complexity Low_complexity 2 51 0 1 1241 309 51 0 0 chr3 85986602 85986641 -73613142 + (TC)n Simple_repeat Simple_repeat 2 40 0 1 1241 414 317 49 0 chr3 85987200 85987323 -73612460 + ID_B1 SINE B4 94 222 -2 1 1241 307 270 18 26 chr3 85987341 85987455 -73612328 + PB1D10 SINE Alu 3 115 -2 1 1241 381 237 0 0 chr3 85987467 85987543 -73612240 + ID4 SINE ID 8 83 0 1 1241 422 259 8 89 chr3 85987775 85987898 -73611885 - B3A SINE B2 -85 113 1 1 1241 860 265 9 9 chr3 85987937 85988158 -73611625 - ID_B1 SINE B4 -3 221 1 1 1241 1737 153 55 77 chr3 85988355 85988758 -73611025 - ORR1B1 LTR MaLR 0 394 1 1 1241 198 0 0 0 chr3 85988794 85988816 -73610967 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 1 1241 416 230 44 50 chr3 85989018 85989178 -73610605 - RLTR14 LTR ERV1 0 382 224 1 1241 333 0 0 0 chr3 85989207 85989244 -73610539 + (TG)n Simple_repeat Simple_repeat 2 38 0 1 1241 2234 105 38 0 chr3 85989693 85990008 -73609775 - ORR1A2 LTR MaLR 0 327 1 1 1241 309 260 148 49 chr3 85990915 85991077 -73608706 + ORR1E LTR MaLR 1 178 -181 1 1241 228 288 40 14 chr3 85991172 85991246 -73608537 + ORR1E LTR MaLR 290 365 -14 1 1241 32 43 0 0 chr3 85992482 85992528 -73607255 + AT_rich Low_complexity Low_complexity 1 46 0 1 1241 941 161 0 13 chr3 85992898 85993049 -73606734 + B1_Mur1 SINE Alu 1 149 0 1 1241 1490 269 89 80 chr3 85993093 85993856 -73605927 + L1MB7 LINE L1 5357 6126 -58 1 1241 405 0 0 0 chr3 85993858 85993903 -73605880 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 1241 331 308 0 0 chr3 85993903 85993981 -73605802 - ID4_ SINE ID -4 79 2 1 1241 683 235 80 48 chr3 85994036 85994224 -73605559 + B3A SINE B2 1 194 -4 1 1241 318 253 0 0 chr3 85994346 85994421 -73605362 + PB1D10 SINE Alu 23 97 -20 1 1241 974 98 17 33 chr3 85994820 85995000 -73604783 + (TTTTC)n Simple_repeat Simple_repeat 3 179 0 1 1241 270 0 0 0 chr3 85995001 85995031 -73604752 + (TTTC)n Simple_repeat Simple_repeat 3 32 0 1 1241 1058 61 30 0 chr3 85995031 85995163 -73604620 - B1_Mus1 SINE Alu -11 137 2 1 1241 382 145 14 0 chr3 85995356 85995425 -73604358 + U6 snRNA snRNA 15 84 -23 1 1241 385 316 9 9 chr3 85995626 85995741 -73604042 + PB1D10 SINE Alu 1 115 -2 1 1241 862 151 27 20 chr3 85995872 85996021 -73603762 - B1_Mur4 SINE Alu 0 150 1 1 1241 193 350 30 68 chr3 85997321 85997453 -73602330 + L3 LINE CR1 4242 4368 -121 1 1241 2818 25 0 3 chr3 85997564 85997883 -73601900 - L1Md_T LINE L1 -75 5808 5491 1 1241 6328 59 0 0 chr3 85997883 85998658 -73601125 + L1Md_T LINE L1 5807 6581 -1 1 1241 1342 183 16 4 chr3 85998785 85999037 -73600746 + ORR1B1 LTR MaLR 1 255 -139 1 1241 646 269 61 5 chr3 85998993 85999191 -73600592 + B4A SINE B4 42 250 -42 1 1241 234 254 134 0 chr3 85999173 85999240 -73600543 + PB1D9 SINE Alu 6 81 -39 1 1241 268 122 24 0 chr3 85999208 85999249 -73600534 + B1_Mur4 SINE Alu 51 92 -58 1 1241 378 0 0 0 chr3 85999327 85999369 -73600414 + (CA)n Simple_repeat Simple_repeat 1 42 0 1 1241 222 62 0 0 chr3 85999369 85999401 -73600382 + (GA)n Simple_repeat Simple_repeat 1 32 0 1 1241 926 116 7 0 chr3 85999483 85999630 -73600153 + (TTTC)n Simple_repeat Simple_repeat 1 148 0 1 1241 382 59 0 0 chr3 85999630 85999681 -73600102 - B1_Mus2 SINE Alu -12 135 85 1 1241 554 146 0 0 chr3 85999721 85999810 -73599973 + B1_Mur4 SINE Alu 5 93 -57 1 1241 216 0 0 0 chr3 85999816 85999840 -73599943 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 1 1241 367 258 170 70 chr3 86000394 86000565 -73599218 + MER2 DNA MER2_type 152 339 -6 1 1241 400 326 123 22 chr3 86000653 86000832 -73598951 + L2 LINE L2 2501 2697 -722 2 1241 593 286 86 0 chr3 86000890 86001124 -73598659 - L1_Mur3 LINE L1 -1955 3925 3672 3 1241 1113 82 0 0 chr3 86001177 86001324 -73598459 + B1_Mus1 SINE Alu 2 148 0 4 1241 222 37 0 0 chr3 86001324 86001351 -73598432 + (A)n Simple_repeat Simple_repeat 1 27 0 5 1241 1292 83 39 0 chr3 86001469 86001650 -73598133 - B2_Mm2 SINE B2 -7 188 1 6 1241 299 324 34 11 chr3 86002104 86002282 -73597501 - L1_Mur3 LINE L1 -4008 1869 1688 3 1241 1070 100 0 0 chr3 86002282 86002422 -73597361 + B1_Mm SINE Alu 2 141 -6 7 1241 186 43 0 0 chr3 86002438 86002461 -73597322 + (TTA)n Simple_repeat Simple_repeat 3 25 0 8 1241 341 272 63 32 chr3 86002882 86002977 -73596806 - PB1D10 SINE Alu -13 104 7 9 1241 2918 285 73 149 chr3 86003274 86004012 -73595771 - ORR1D1-int LTR MaLR -132 1448 742 1 1241 956 102 0 7 chr3 86004012 86004160 -73595623 + (TTCC)n Simple_repeat Simple_repeat 2 148 0 1 1241 428 0 19 0 chr3 86004163 86004215 -73595568 + (TTTA)n Simple_repeat Simple_repeat 1 53 0 1 1241 2918 285 73 149 chr3 86004215 86004366 -73595417 - ORR1D1-int LTR MaLR -839 741 692 1 1241 1193 91 11 38 chr3 86004366 86004549 -73595234 - B2_Mm1t SINE B2 -14 179 2 1 1241 2918 285 73 149 chr3 86004549 86005221 -73594562 - ORR1D1-int LTR MaLR -889 691 1 1 1241 257 182 0 0 chr3 86005221 86005265 -73594518 - ORR1D1 LTR MaLR 0 379 336 1 1241 478 215 29 117 chr3 86005361 86005440 -73594343 + RMER20B LTR ERVK 1 69 -558 1 1241 1253 56 65 32 chr3 86005440 86005625 -73594158 + B2_Mm1t SINE B2 2 192 -1 1 1241 478 250 25 107 chr3 86005625 86005719 -73594064 + RMER20B LTR ERVK 70 161 -355 1 1241 423 212 8 117 chr3 86005994 86006019 -73593764 + MT2B LTR ERVL 145 155 -446 1 1241 909 178 0 0 chr3 86006019 86006165 -73593618 + B1_Mus1 SINE Alu 2 147 -1 1 1241 226 246 285 41 chr3 86006674 86006797 -73592986 + RSINE1 SINE B4 3 155 -10 1 1241 913 203 20 41 chr3 86006790 86006985 -73592798 - ORR1D1 LTR MaLR -181 193 3 1 1241 630 241 69 23 chr3 86007045 86007219 -73592564 + B3A SINE B2 1 182 -16 1 1241 308 311 0 0 chr3 86007433 86007507 -73592276 + ID4 SINE ID 5 78 -5 2 1241 642 219 8 0 chr3 86007625 86007748 -73592035 + ID_B1 SINE B4 91 214 -10 2 1241 444 260 29 0 chr3 86007830 86007934 -73591849 + B1_Mur1 SINE Alu 34 140 -9 2 1241 388 296 23 23 chr3 86007998 86008126 -73591657 + B1F1 SINE Alu 22 149 0 2 1241 185 337 74 0 chr3 86008651 86008746 -73591037 - L2a LINE L2 -36 3390 3289 2 1241 181 277 21 0 chr3 86008782 86008829 -73590954 - L2b LINE L2 -19 3356 3309 2 1241 472 298 125 0 chr3 86008999 86009167 -73590616 - Tigger12c DNA MER2_type -522 212 24 2 1241 236 192 39 0 chr3 86009253 86009305 -73590478 + ID4_ SINE ID 8 61 -22 2 1241 351 274 174 26 chr3 86009454 86009649 -73590134 - Charlie4a DNA MER1_type -27 481 258 2 1241 28 0 0 0 chr3 86009728 86009756 -73590027 + AT_rich Low_complexity Low_complexity 1 28 0 2 1241 971 156 200 0 chr3 86009770 86009950 -73589833 + B3 SINE B2 1 216 0 3 1241 306 232 130 94 chr3 86009966 86010062 -73589721 - PB1D10 SINE Alu -13 104 6 3 1241 448 235 20 10 chr3 86010066 86010165 -73589618 - B3 SINE B2 0 216 117 3 1241 465 240 48 0 chr3 86010290 86010394 -73589389 - PB1D10 SINE Alu -6 111 3 3 1241 495 190 0 0 chr3 86010619 86010698 -73589085 - B3 SINE B2 -137 79 1 3 1241 571 227 50 8 chr3 86010804 86010924 -73588859 - B1_Mur1 SINE Alu -23 126 2 3 1241 341 258 11 0 chr3 86010939 86011028 -73588755 - L1M2 LINE L1 -536 5764 5675 3 1241 701 262 7 0 chr3 86011153 86011294 -73588489 - ID_B1 SINE B4 -20 204 63 3 1241 2830 52 0 3 chr3 86011535 86011882 -73587901 + ORR1A0 LTR MaLR 1 346 0 3 1241 579 254 32 43 chr3 86011978 86012153 -73587630 + B4A SINE B4 2 171 -53 3 1241 282 333 31 10 chr3 86012072 86012169 -73587614 + PB1D10 SINE Alu 11 109 -8 3 1241 531 45 0 0 chr3 86012175 86012241 -73587542 + (CAAG)n Simple_repeat Simple_repeat 2 67 0 4 1241 659 216 204 0 chr3 86012719 86012900 -73586883 + ID_B1 SINE B4 4 221 -3 4 1241 474 326 15 0 chr3 86012915 86013050 -73586733 + RSINE1 SINE B4 12 148 -17 4 1241 393 212 12 48 chr3 86013533 86013617 -73586166 - B3 SINE B2 -133 83 3 4 1241 1737 221 112 105 chr3 86013925 86014058 -73585725 + RLTR20C LTR ERVK 3 92 -459 4 1241 1212 41 0 14 chr3 86014058 86014206 -73585577 - B1_Mus2 SINE Alu -1 146 1 4 1241 1821 172 94 45 chr3 86014206 86014617 -73585166 + RLTR20C LTR ERVK 85 551 0 4 1241 680 164 111 7 chr3 86014795 86014930 -73584853 + B1_Mur1 SINE Alu 1 149 0 4 1241 273 224 16 49 chr3 86015335 86015396 -73584387 + B1F2 SINE Alu 4 63 -85 4 1241 361 250 12 0 chr3 86015500 86015584 -73584199 - ID_B1 SINE B4 0 224 140 4 1241 1235 48 0 0 chr3 86015729 86015876 -73583907 + B1_Mus2 SINE Alu 1 147 0 4 1241 189 0 0 0 chr3 86015876 86015897 -73583886 + (A)n Simple_repeat Simple_repeat 1 21 0 5 1241 311 267 11 75 chr3 86015904 86015997 -73583786 + RSINE1 SINE B4 34 120 -45 5 1241 9350 73 4 4 chr3 86016127 86018201 -73581582 + L1_Mus2 LINE L1 4493 6566 0 5 1241 21 57 0 0 chr3 86018648 86018683 -73581100 + AT_rich Low_complexity Low_complexity 1 35 0 5 1241 422 264 8 83 chr3 86018936 86019056 -73580727 + PB1 SINE Alu 1 111 -16 5 1241 263 320 40 13 chr3 86019069 86019145 -73580638 + B1F1 SINE Alu 6 83 -66 5 1241 317 290 130 53 chr3 86019287 86019418 -73580365 + B4 SINE B4 74 214 -78 5 1241 531 167 167 0 chr3 86019312 86019432 -73580351 + B1F2 SINE Alu 7 146 -3 5 1241 250 291 36 48 chr3 86019482 86019565 -73580218 - MER5B DNA MER1_type -22 156 75 5 1241 315 288 0 51 chr3 86019782 86019843 -73579940 + RMER1C Other Other 30 89 -1253 5 1241 318 26 0 0 chr3 86019843 86019882 -73579901 + (CA)n Simple_repeat Simple_repeat 2 40 0 6 1241 315 288 0 51 chr3 86019882 86019937 -73579846 + RMER1C Other Other 90 140 -1202 5 1241 1445 191 141 109 chr3 86019976 86020509 -73579274 + RMER1C Other Other 792 1341 -1 6 1241 1453 67 0 30 chr3 86020570 86020770 -73579013 - B2_Mm2 SINE B2 0 195 2 6 1241 280 310 14 14 chr3 86021358 86021430 -73578353 - ID4_ SINE ID -6 77 6 6 1241 5733 88 31 5 chr3 86021465 86022264 -73577519 - L1Md_F2 LINE L1 0 6582 5763 6 1241 3404 54 0 5 chr3 86022264 86022712 -73577071 + L1Md_F2 LINE L1 5268 5713 -170 6 1241 1072 140 130 0 chr3 86022713 86022913 -73576870 + URR1A DNA MER1_type 1 226 0 6 1241 283 298 61 117 chr3 86023382 86023633 -73576150 - MLT1F LTR MaLR -17 543 236 6 1241 345 194 56 0 chr3 86023892 86023964 -73575819 + ID4_ SINE ID 8 83 0 6 1241 412 242 59 29 chr3 86024070 86024172 -73575611 + PB1D10 SINE Alu 6 110 -7 6 1241 347 233 0 30 chr3 86024829 86024907 -73574876 - ID4_ SINE ID -66 86 11 6 1241 729 216 34 72 chr3 86024941 86025117 -73574666 - B3 SINE B2 -1 215 48 7 1241 1519 52 10 0 chr3 86025117 86025309 -73574474 - B2_Mm2 SINE B2 -1 194 1 7 1241 1696 26 0 0 chr3 86025315 86025508 -73574275 - B2_Mm1a SINE B2 0 193 1 7 1241 260 226 0 299 chr3 86025508 86025575 -73574208 - B2_Mm2 SINE B2 -141 54 1 7 1241 263 292 102 19 chr3 86025592 86025700 -73574083 - PB1D10 SINE Alu 0 117 1 7 1241 198 103 0 0 chr3 86028072 86028101 -73571682 + (CCCG)n Simple_repeat Simple_repeat 2 30 0 7 1241 216 97 0 0 chr3 86029682 86029713 -73570070 + (TG)n Simple_repeat Simple_repeat 2 32 0 7 1241 206 225 42 0 chr3 86030600 86030671 -73569112 + (TA)n Simple_repeat Simple_repeat 2 75 0 7 1241 280 182 114 57 chr3 86031798 86031868 -73567915 - B4A SINE B4 0 292 219 7 1241 323 306 86 54 chr3 86031911 86032187 -73567596 - RSINE1 SINE B4 -14 278 21 7 1241 613 193 26 0 chr3 86032187 86032301 -73567482 - PB1D9 SINE Alu 0 120 4 7 1241 204 111 0 0 chr3 86032301 86032337 -73567446 + (CATG)n Simple_repeat Simple_repeat 4 39 0 7 1241 294 354 22 84 chr3 86032337 86032352 -73567431 - B4A SINE B4 -272 20 7 7 1241 523 276 110 0 chr3 86032369 86032496 -73567287 - B4A SINE B4 -86 206 66 8 1241 328 314 177 7 chr3 86032552 86032693 -73567090 - HAL1-3A_ME LINE L1 -410 2448 2284 8 1241 476 323 0 36 chr3 86032712 86032850 -73566933 - B1F2 SINE Alu -3 146 14 8 1241 2164 173 61 5 chr3 86033054 86033450 -73566333 - MTC LTR MaLR -3 418 1 8 1241 499 262 0 24 chr3 86033513 86033638 -73566145 - PB1 SINE Alu -5 122 1 8 1241 1147 69 7 0 chr3 86033721 86033866 -73565917 + B1_Mus2 SINE Alu 2 147 0 8 1241 464 45 15 0 chr3 86033868 86033935 -73565848 + (CAAAA)n Simple_repeat Simple_repeat 1 68 0 8 1241 217 283 67 0 chr3 86033993 86034053 -73565730 - MIR SINE MIR -168 94 31 8 1241 859 234 52 56 chr3 86034457 86034735 -73565048 - MT2B LTR ERVL 0 601 329 8 1241 692 147 101 0 chr3 86034743 86034872 -73564911 - B1_Mur2 SINE Alu -7 142 1 8 1241 186 43 0 0 chr3 86034875 86034898 -73564885 + (TTG)n Simple_repeat Simple_repeat 2 24 0 9 1241 263 275 72 81 chr3 86034932 86035043 -73564740 - ID_B1 SINE B4 -25 199 90 9 1241 22 80 0 0 chr3 86035286 86035336 -73564447 + AT_rich Low_complexity Low_complexity 1 50 0 9 1241 637 145 103 0 chr3 86035564 86035681 -73564102 + B1_Mur3 SINE Alu 14 142 -7 9 1241 243 103 0 0 chr3 86035695 86035734 -73564049 + (A)n Simple_repeat Simple_repeat 1 39 0 9 1241 373 324 115 9 chr3 86036160 86036378 -73563405 - L1M4 LINE L1 -1126 5020 4780 9 1241 1459 264 75 45 chr3 86036490 86037155 -73562628 - Lx9 LINE L1 -6 7638 6954 9 1241 463 243 126 0 chr3 86037157 86037268 -73562515 - B4A SINE B4 -65 227 103 9 1241 616 227 86 0 chr3 86037275 86037403 -73562380 - B1_Mur1 SINE Alu -1 148 10 9 1241 482 187 30 7 chr3 86037476 86037611 -73562172 + CT-rich Low_complexity Low_complexity 1 138 0 9 1241 666 232 93 87 chr3 86037674 86037887 -73561896 - L1M4 LINE L1 -1338 4808 4612 9 1241 512 191 212 25 chr3 86037887 86038005 -73561778 - B1_Mur2 SINE Alu -9 140 1 1 1241 666 232 93 87 chr3 86038005 86038112 -73561671 - L1M4 LINE L1 -1535 4611 4486 9 1241 359 292 105 53 chr3 86038181 86038333 -73561450 - B4A SINE B4 -23 269 110 1 1241 1012 166 64 41 chr3 86038378 86038598 -73561185 - URR1B DNA MER1_type 0 225 1 1 1241 401 111 174 0 chr3 86038876 86038981 -73560802 - B2_Mm2 SINE B2 -5 190 47 1 1241 1201 85 12 0 chr3 86039008 86039172 -73560611 - B2_Mm1t SINE B2 -13 180 15 1 1241 25 0 0 0 chr3 86039178 86039203 -73560580 + AT_rich Low_complexity Low_complexity 1 25 0 1 1241 206 278 0 18 chr3 86039292 86039347 -73560436 + CT-rich Low_complexity Low_complexity 2 55 0 1 1241 251 265 148 57 chr3 86039440 86039528 -73560255 - PB1D10 SINE Alu -21 96 1 1 1241 420 288 0 0 chr3 86039577 86040358 -73559425 + (TG)n Simple_repeat Simple_repeat 1 781 0 1 1241 890 255 66 46 chr3 86040391 86040650 -73559133 - B4A SINE B4 -20 272 9 1 1241 303 71 0 0 chr3 86040680 86040722 -73559061 + (TG)n Simple_repeat Simple_repeat 1 42 0 1 1241 697 303 28 23 chr3 86040730 86040946 -73558837 - B4A SINE B4 -6 286 70 1 1241 298 320 72 0 chr3 86040963 86041060 -73558723 - B4A SINE B4 -185 107 4 1 1241 886 228 34 24 chr3 86041161 86041368 -73558415 - B3 SINE B2 -6 210 2 1 1241 381 247 12 0 chr3 86041412 86041493 -73558290 - ID4 SINE ID 0 83 2 1 1241 262 197 62 62 chr3 86041520 86041585 -73558198 - PB1 SINE Alu -51 76 12 1 1241 214 258 72 43 chr3 86041538 86041607 -73558176 - B4A SINE B4 -146 146 76 1 1241 1425 177 91 94 chr3 86041671 86041955 -73557828 - ORR1D1 LTR MaLR -1 373 96 1 1241 1365 85 16 5 chr3 86041955 86042144 -73557639 - B2_Mm2 SINE B2 -3 192 2 1 1241 1425 177 91 94 chr3 86042144 86042233 -73557550 - ORR1D1 LTR MaLR -279 95 1 1 1241 470 195 208 16 chr3 86042443 86042568 -73557215 + B1_Mur2 SINE Alu 1 149 0 1 1241 17337 26 0 0 chr3 86042614 86045399 -73554384 - L1Md_T LINE L1 0 6582 3798 1 1241 502 339 30 19 chr3 86045635 86045833 -73553950 - ID_B1 SINE B4 0 292 84 1 1241 338 167 0 12 chr3 86046113 86046198 -73553585 + (TA)n Simple_repeat Simple_repeat 2 85 0 1 1241 29 28 0 0 chr3 86046228 86046264 -73553519 + AT_rich Low_complexity Low_complexity 1 36 0 1 1241 303 227 0 0 chr3 86046386 86046474 -73553309 + (CTGGGG)n Simple_repeat Simple_repeat 1 88 0 1 1241 241 221 0 105 chr3 86046523 86046599 -73553184 + B1_Mur1 SINE Alu 66 133 -16 1 1241 1452 146 0 12 chr3 86046916 86047165 -73552618 + Lx2 LINE L1 6752 6997 0 1 1241 194 151 192 64 chr3 86047226 86047304 -73552479 - MIRb SINE MIR -1 267 180 1 1241 636 284 191 48 chr3 86047366 86047575 -73552208 - Tigger9a DNA Tigger -69 663 410 1 1241 266 0 0 29 chr3 86047575 86047610 -73552173 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 1 1241 636 284 191 48 chr3 86047610 86047840 -73551943 - Tigger9a DNA Tigger -323 409 161 1 1241 410 258 21 0 chr3 86047884 86047981 -73551802 - ID_B1 SINE B4 0 224 126 1 1241 1199 201 165 63 chr3 86048118 86048452 -73551331 - ORR1C1 LTR MaLR 0 378 11 1 1241 699 286 96 5 chr3 86048834 86049031 -73550752 + B3 SINE B2 2 216 0 1 1241 292 294 0 0 chr3 86049089 86049162 -73550621 + ID4 SINE ID 23 95 -57 1 1241 185 283 83 0 chr3 86049674 86049734 -73550049 - MIRm SINE MIR -69 207 143 1 1241 812 123 38 5 chr3 86050460 86050681 -73549102 + CT-rich Low_complexity Low_complexity 1 228 0 1 1241 215 176 0 227 chr3 86050686 86050774 -73549009 - B1F SINE Alu -9 140 73 1 1241 1076 201 23 0 chr3 86050821 86051035 -73548748 - URR1A DNA MER1_type 0 226 8 1 1241 277 315 217 20 chr3 86051580 86051875 -73547908 + L2a LINE L2 3074 3426 0 1 1241 512 247 47 65 chr3 86052052 86052221 -73547562 - B4 SINE B4 -9 283 118 1 1241 604 258 109 36 chr3 86052238 86052289 -73547494 - ID_B1 SINE B4 -3 221 171 1 1241 2620 62 86 26 chr3 86052289 86052672 -73547111 - MTB_Mm LTR MaLR -1 406 1 1 1241 604 258 109 36 chr3 86052672 86052813 -73546970 - ID_B1 SINE B4 -54 170 15 1 1241 887 163 7 7 chr3 86054177 86054319 -73545464 - B1_Mur2 SINE Alu 0 149 8 1 1241 31 0 0 0 chr3 86054337 86054368 -73545415 + AT_rich Low_complexity Low_complexity 1 31 0 1 1241 235 244 24 49 chr3 86054368 86054532 -73545251 + (TATAA)n Simple_repeat Simple_repeat 1 160 0 1 1241 365 256 191 8 chr3 86054561 86054687 -73545096 - RSINE1 SINE B4 -1 164 16 1 1241 23 0 0 0 chr3 86055020 86055043 -73544740 + AT_rich Low_complexity Low_complexity 1 23 0 1 1241 1439 217 56 34 chr3 86055190 86055600 -73544183 + MTD LTR MaLR 1 419 0 1 1241 274 175 59 37 chr3 86055753 86055874 -73543909 + L1MB5 LINE L1 5814 5931 -243 1 1241 34 55 0 0 chr3 86055874 86055929 -73543854 + AT_rich Low_complexity Low_complexity 1 55 0 1 1241 281 237 56 33 chr3 86055953 86056024 -73543759 + B1_Mur1 SINE Alu 49 148 -1 1 1241 516 250 19 0 chr3 86056658 86056766 -73543017 - PB1D7 SINE Alu -9 111 2 1 1241 218 315 19 0 chr3 86057614 86057668 -73542115 - ID4 SINE ID -28 55 1 1 1241 422 313 0 0 chr3 86057765 86057864 -73541919 + PB1 SINE Alu 11 109 -18 1 1241 2226 137 27 120 chr3 86057878 86058482 -73541301 + RLTR25B LTR ERVK 9 1103 0 1 1241 980 179 86 14 chr3 86058793 86059003 -73540780 + URR1B DNA MER1_type 1 225 0 1 1241 1379 85 5 0 chr3 86059008 86059196 -73540587 + B2_Mm1t SINE B2 1 189 -4 1 1241 340 318 123 27 chr3 86060179 86060399 -73539384 - L1MEc LINE L1 -6039 361 121 1 1241 293 226 0 16 chr3 86060441 86060504 -73539279 - PB1D10 SINE Alu -5 112 51 1 1241 666 206 183 0 chr3 86060657 86060832 -73538951 + B3 SINE B2 4 210 -6 1 1241 753 259 104 0 chr3 86060959 86061179 -73538604 - MLT1F-int LTR MaLR -239 1250 1008 1 1241 336 288 68 74 chr3 86061284 86061460 -73538323 - HAL1-3A_ME LINE L1 -702 2156 1982 1 1241 318 345 39 8 chr3 86061467 86061684 -73538099 - B4A SINE B4 -2 290 8 1 1241 1331 85 16 5 chr3 86061711 86061900 -73537883 - B2_Mm2 SINE B2 -4 191 1 1 1241 186 43 0 0 chr3 86061982 86062005 -73537778 + (TAA)n Simple_repeat Simple_repeat 2 24 0 1 1241 259 355 45 9 chr3 86062014 86062125 -73537658 - PB1D10 SINE Alu -2 115 1 1 1241 210 319 139 0 chr3 86062123 86062195 -73537588 - ID4_ SINE ID 0 83 2 1 1241 249 152 0 0 chr3 86062690 86062736 -73537047 - L1MC5 LINE L1 -215 7746 7701 1 1241 743 255 60 5 chr3 86062798 86062999 -73536784 - B3 SINE B2 -4 212 1 1 1241 281 278 26 22 chr3 86063243 86063362 -73536421 - ID4 SINE ID -31 121 7 1 1241 784 215 21 7 chr3 86063377 86063522 -73536261 - B1_Mur2 SINE Alu -1 148 2 1 1241 307 366 35 21 chr3 86063657 86063802 -73535981 - RSINE1 SINE B4 -17 148 2 1 1241 422 284 67 18 chr3 86063884 86064049 -73535734 - B4A SINE B4 0 292 120 1 1241 600 315 7 0 chr3 86064961 86065107 -73534676 - ID_B1 SINE B4 0 224 78 1 1241 1251 98 12 0 chr3 86065345 86065518 -73534265 + B2_Mm1t SINE B2 5 179 -14 1 1241 2592 98 8 8 chr3 86065524 86065916 -73533867 + L1_Mus4 LINE L1 6243 6634 -2 1 1241 420 181 0 0 chr3 86066197 86066280 -73533503 + (TA)n Simple_repeat Simple_repeat 2 84 0 1 1241 24 67 0 0 chr3 86066284 86066329 -73533454 + AT_rich Low_complexity Low_complexity 1 45 0 1 1241 253 301 83 38 chr3 86066489 86066779 -73533004 - L1MC4a LINE L1 -1925 5957 5655 1 1241 4888 140 67 12 chr3 86069201 86070053 -73529730 - RMER19B LTR ERVK 0 902 4 1 1241 303 343 114 6 chr3 86070282 86070458 -73529325 + MIR SINE MIR 1 195 -67 1 1241 243 0 0 0 chr3 86070458 86070485 -73529298 + (TA)n Simple_repeat Simple_repeat 1 27 0 1 1241 204 40 0 0 chr3 86070736 86070761 -73529022 + (CA)n Simple_repeat Simple_repeat 2 26 0 1 1241 222 62 0 0 chr3 86070771 86070803 -73528980 + (T)n Simple_repeat Simple_repeat 1 32 0 1 1241 1168 68 0 0 chr3 86070803 86070949 -73528834 - B1_Mm SINE Alu 0 147 2 1 1241 203 250 0 30 chr3 86071073 86071106 -73528677 + T-rich Low_complexity Low_complexity 33 64 0 1 1241 1387 84 21 0 chr3 86071106 86071296 -73528487 - B2_Mm2 SINE B2 -1 194 1 1 1241 203 250 0 30 chr3 86071296 86071328 -73528455 + T-rich Low_complexity Low_complexity 1 32 0 1 1241 1162 62 0 0 chr3 86071659 86071805 -73527978 - B1_Mus1 SINE Alu -1 147 2 1 1241 318 272 0 42 chr3 86072120 86072216 -73527567 - ID_B1 SINE B4 -6 218 127 1 1241 300 284 64 58 chr3 86072318 86072490 -73527293 - L1MC5 LINE L1 -569 7392 7220 1 1241 333 62 0 0 chr3 86072532 86072580 -73527203 + (CAAAC)n Simple_repeat Simple_repeat 2 49 0 1 1241 189 154 0 0 chr3 86072620 86072659 -73527124 + CT-rich Low_complexity Low_complexity 2 40 0 1 1241 318 233 64 40 chr3 86072674 86072799 -73526984 - L1MC5 LINE L1 -824 7137 7010 1 1241 1224 114 0 0 chr3 86072841 86073016 -73526767 + URR1A DNA MER1_type 52 226 0 1 1241 1240 51 70 49 chr3 86073154 86073339 -73526444 - B2_Mm2 SINE B2 -5 190 2 1 1241 244 231 37 37 chr3 86073344 86073425 -73526358 - L1MC5 LINE L1 -1090 6871 6791 1 1241 202 188 0 0 chr3 86073576 86073608 -73526175 + (TG)n Simple_repeat Simple_repeat 2 33 0 1 1241 891 250 165 94 chr3 86073684 86073889 -73525894 - L1M4 LINE L1 -2150 3996 3855 1 1241 634 261 92 96 chr3 86073889 86074181 -73525602 - B4 SINE B4 -1 291 1 1 1241 891 250 165 94 chr3 86074181 86074600 -73525183 - L1M4 LINE L1 -2292 3854 3338 1 1241 402 21 0 0 chr3 86074600 86074647 -73525136 + (TC)n Simple_repeat Simple_repeat 2 48 0 1 1241 891 250 165 94 chr3 86074647 86074754 -73525029 - L1M4 LINE L1 -2809 3337 3214 1 1241 205 225 28 14 chr3 86074852 86074924 -73524859 + (CATATA)n Simple_repeat Simple_repeat 3 75 0 1 1241 305 276 73 37 chr3 86076014 86076123 -73523660 - PB1D10 SINE Alu -2 115 3 2 1241 228 273 66 117 chr3 86076123 86076161 -73523622 - MT2B2 LTR ERVL -420 164 134 2 1241 1742 261 138 20 chr3 86076171 86077639 -73522144 - L1MD1 LINE L1 -39 6203 4562 2 1241 2940 210 57 186 chr3 86077788 86078963 -73520820 - RMER1B Other Other 0 1066 44 2 1241 1519 170 79 87 chr3 86079406 86079761 -73520022 - Lx5 LINE L1 0 7050 6699 2 1241 250 200 0 0 chr3 86079761 86079801 -73519982 + B3 SINE B2 14 53 -163 2 1241 566 265 44 27 chr3 86079890 86080115 -73519668 - L1MD1 LINE L1 -2572 3574 3346 2 1241 216 0 0 0 chr3 86080151 86080175 -73519608 + (TTTTTA)n Simple_repeat Simple_repeat 1 24 0 2 1241 207 0 0 0 chr3 86080260 86080283 -73519500 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2 1241 905 52 0 0 chr3 86080283 86080398 -73519385 - B1_Mus2 SINE Alu -9 138 24 2 1241 274 288 36 7 chr3 86080403 86080543 -73519240 - L1MD1 LINE L1 -2916 3230 3087 2 1241 682 251 95 45 chr3 86080633 86080812 -73518971 - B3A SINE B2 -4 194 7 2 1241 252 189 75 75 chr3 86080742 86080822 -73518961 - B4 SINE B4 -212 80 1 2 1241 3723 238 125 19 chr3 86080937 86082000 -73517783 - Lx9 LINE L1 -128 7516 6341 2 1241 184 122 0 47 chr3 86082021 86082064 -73517719 + CT-rich Low_complexity Low_complexity 6 46 0 2 1241 226 217 0 0 chr3 86082064 86082110 -73517673 + (TG)n Simple_repeat Simple_repeat 2 47 0 2 1241 978 167 94 40 chr3 86082112 86082336 -73517447 - L1_Rod LINE L1 -298 5549 5314 2 1241 932 155 47 6 chr3 86082341 86082510 -73517273 - B3 SINE B2 0 216 41 2 1241 907 199 19 34 chr3 86082669 86082877 -73516906 - B3 SINE B2 -10 206 2 2 1241 442 233 22 0 chr3 86082894 86082984 -73516799 - B1F2 SINE Alu -4 145 54 2 1241 513 0 0 0 chr3 86083826 86083883 -73515900 + (TC)n Simple_repeat Simple_repeat 2 58 0 2 1241 2230 104 3 33 chr3 86083949 86084286 -73515497 - ORR1A2 LTR MaLR 0 327 1 2 1241 21 0 0 0 chr3 86086577 86086598 -73513185 + AT_rich Low_complexity Low_complexity 1 21 0 2 1241 7804 67 1 1 chr3 86086602 86087725 -73512058 - L1_Mus1 LINE L1 -1 6566 5442 2 1241 285 305 0 17 chr3 86087725 86087785 -73511998 - ID4_ SINE ID -20 63 5 2 1241 325 330 9 0 chr3 86087875 86087944 -73511839 - ID_B1 SINE B4 -6 218 150 2 1241 216 0 0 0 chr3 86087944 86087968 -73511815 + (TTAA)n Simple_repeat Simple_repeat 3 26 0 2 1241 325 330 9 0 chr3 86087968 86088007 -73511776 - ID_B1 SINE B4 -75 149 110 2 1241 383 310 60 8 chr3 86087987 86088104 -73511679 - B1_Mur2 SINE Alu -21 128 6 2 1241 655 259 90 20 chr3 86088132 86088333 -73511450 - B3 SINE B2 0 216 2 2 1241 243 229 62 0 chr3 86088333 86088381 -73511402 - ID_B1 SINE B4 -67 157 107 2 1241 1177 69 86 0 chr3 86088608 86088782 -73511001 + B2_Mm2 SINE B2 2 190 -5 2 1241 366 219 290 58 chr3 86089285 86089440 -73510343 - B3A SINE B2 -7 191 1 2 1241 219 88 0 0 chr3 86090710 86090744 -73509039 + (TTTTC)n Simple_repeat Simple_repeat 2 35 0 2 1241 303 85 0 0 chr3 86090808 86090855 -73508928 + (TTTTTG)n Simple_repeat Simple_repeat 1 47 0 2 1241 784 283 38 19 chr3 86090871 86091080 -73508703 - B4 SINE B4 0 292 80 2 1241 244 161 32 0 chr3 86091097 86091159 -73508624 + C-rich Low_complexity Low_complexity 4 67 0 2 1241 512 252 122 90 chr3 86091164 86091386 -73508397 - B4 SINE B4 -63 229 1 2 1241 294 138 0 0 chr3 86092825 86092883 -73506900 - Lx8 LINE L1 0 7473 7416 2 1241 546 322 11 0 chr3 86092939 86093116 -73506667 + Lx7 LINE L1 7130 7308 -388 2 1241 242 261 26 18 chr3 86093116 86093229 -73506554 + T-rich Low_complexity Low_complexity 1 114 0 2 1241 216 0 0 0 chr3 86093459 86093483 -73506300 + (TG)n Simple_repeat Simple_repeat 1 24 0 2 1241 709 294 7 7 chr3 86093497 86093651 -73506132 - RSINE1 SINE B4 -9 156 3 2 1241 249 365 40 58 chr3 86094431 86094707 -73505076 - L2c LINE L2 -98 3289 3019 2 1241 534 261 154 10 chr3 86094824 86095025 -73504758 + MIR SINE MIR 8 237 -25 2 1241 198 0 0 0 chr3 86095727 86095749 -73504034 + (T)n Simple_repeat Simple_repeat 1 22 0 2 1241 515 241 41 28 chr3 86095840 86095985 -73503798 - B1F1 SINE Alu 0 149 3 2 1241 224 214 0 0 chr3 86095987 86096029 -73503754 - ID4_ SINE ID -40 43 2 2 1241 481 306 30 0 chr3 86096277 86096411 -73503372 + ID_B1 SINE B4 86 223 -1 2 1241 3361 40 0 0 chr3 86097099 86097495 -73502288 - MTA_Mm LTR MaLR 0 396 1 2 1241 557 264 183 47 chr3 86097630 86098141 -73501642 - L1MB8 LINE L1 -15 6163 5584 2 1241 306 0 0 0 chr3 86098212 86098246 -73501537 + (TG)n Simple_repeat Simple_repeat 1 34 0 2 1241 256 311 0 0 chr3 86098258 86098332 -73501451 - ID4 SINE ID -8 75 2 2 1241 373 256 2 10 chr3 86098334 86098445 -73501338 - L1M2 LINE L1 -860 5440 5329 2 1241 691 250 7 0 chr3 86098467 86098615 -73501168 - B1_Mur1 SINE Alu 0 149 1 2 1241 33 0 0 0 chr3 86098804 86098837 -73500946 + AT_rich Low_complexity Low_complexity 1 33 0 2 1241 504 0 0 0 chr3 86099537 86099593 -73500190 + (TATG)n Simple_repeat Simple_repeat 2 57 0 2 1241 649 168 44 8 chr3 86099606 86099749 -73500034 - B2_Mm2 SINE B2 -52 164 5 2 1241 1279 194 251 3 chr3 86100318 86100649 -73499134 - MTC LTR MaLR -8 413 1 2 1241 201 250 0 0 chr3 86101155 86101191 -73498592 + MIR SINE MIR 56 91 -171 2 1241 200 0 100 0 chr3 86101630 86101660 -73498123 + (TTATA)n Simple_repeat Simple_repeat 1 33 0 2 1241 319 364 109 0 chr3 86102031 86102196 -73497587 + MER119 DNA MER1_type 16 198 -385 2 1241 1025 272 110 17 chr3 86102197 86102679 -73497104 - L1MA6 LINE L1 -5 6295 5769 2 1241 450 223 126 0 chr3 86102714 86102817 -73496966 - B1_Mur3 SINE Alu -32 117 2 2 1241 283 188 0 127 chr3 86102817 86102843 -73496940 - MT2B2 LTR ERVL -428 156 145 2 1241 383 242 10 10 chr3 86102855 86102955 -73496828 - L1MA6 LINE L1 -567 5724 5625 2 1241 341 326 43 7 chr3 86102995 86103134 -73496649 - B1_Mur2 SINE Alu -4 145 2 2 1241 483 277 119 122 chr3 86103167 86103349 -73496434 - L1M4 LINE L1 -744 5402 5193 2 1241 335 41 20 0 chr3 86103349 86103398 -73496385 + (TTTTG)n Simple_repeat Simple_repeat 2 51 0 2 1241 483 277 119 122 chr3 86103398 86103411 -73496372 - L1M4 LINE L1 -954 5192 5190 2 1241 1060 76 14 7 chr3 86103411 86103557 -73496226 - B1_Mus2 SINE Alu 0 147 1 2 1241 483 277 119 122 chr3 86103557 86103604 -73496179 - L1M4 LINE L1 -957 5189 5161 2 1241 641 154 163 0 chr3 86103604 86103727 -73496056 - B1_Mur3 SINE Alu -6 143 1 2 1241 483 277 119 122 chr3 86103727 86103901 -73495882 - L1M4 LINE L1 -986 5160 4985 2 1241 1249 82 38 11 chr3 86103901 86104086 -73495697 - B2_Mm2 SINE B2 -1 194 5 2 1241 337 297 110 0 chr3 86104157 86104275 -73495508 + MLT1A0 LTR MaLR 1 131 -234 2 1241 276 250 51 61 chr3 86104694 86104792 -73494991 - PB1D10 SINE Alu -7 110 14 2 1241 375 323 39 0 chr3 86105576 86105731 -73494052 - L1M4 LINE L1 -589 5595 5435 2 1241 213 94 0 0 chr3 86105733 86105765 -73494018 + (TG)n Simple_repeat Simple_repeat 1 32 0 2 1241 335 169 0 15 chr3 86105932 86105998 -73493785 - B4A SINE B4 -218 74 10 2 1241 837 128 113 0 chr3 86106629 86106762 -73493021 - B1_Mur4 SINE Alu -2 148 1 2 1241 207 0 0 0 chr3 86106801 86106824 -73492959 + (TTTA)n Simple_repeat Simple_repeat 3 25 0 2 1241 1195 51 19 0 chr3 86106824 86106981 -73492802 - B2_Mm1t SINE B2 -33 160 1 2 1241 455 212 26 17 chr3 86107001 86107116 -73492667 - PB1D9 SINE Alu 0 120 5 2 1241 811 172 186 43 chr3 86107298 86107486 -73492297 - B3 SINE B2 0 216 2 2 1241 730 287 122 21 chr3 86107549 86108023 -73491760 + L1M4 LINE L1 2495 3016 -3130 2 1241 252 280 179 41 chr3 86108688 86108811 -73490972 - B1F1 SINE Alu -7 142 3 2 1241 699 225 42 0 chr3 86109053 86109195 -73490588 + B1_Mur2 SINE Alu 2 149 0 2 1241 288 317 92 72 chr3 86109059 86109212 -73490571 + B4A SINE B4 93 248 -44 2 1241 384 119 0 0 chr3 86109220 86109279 -73490504 + (TA)n Simple_repeat Simple_repeat 1 59 0 2 1241 24 0 0 0 chr3 86109691 86109715 -73490068 + AT_rich Low_complexity Low_complexity 1 24 0 2 1241 198 0 0 0 chr3 86109857 86109879 -73489904 + (TTTA)n Simple_repeat Simple_repeat 4 25 0 2 1241 253 67 0 43 chr3 86109879 86109926 -73489857 - RMER16-int LTR ERVK -1034 4372 4328 2 1241 1182 206 124 39 chr3 86110097 86110461 -73489322 - RMER16-int LTR ERVK -1433 3973 3579 2 1241 2991 144 99 5 chr3 86110456 86111043 -73488740 - RLTR19-int LTR ERVK -4847 1290 649 2 1241 1751 199 6 14 chr3 86111043 86111399 -73488384 - L1_Mur2 LINE L1 -6023 689 337 2 1241 402 250 87 0 chr3 86111832 86111936 -73487847 - PB1D7 SINE Alu -7 113 1 2 1241 321 26 0 0 chr3 86112255 86112293 -73487490 + (TC)n Simple_repeat Simple_repeat 1 38 0 2 1241 1145 62 7 0 chr3 86112325 86112471 -73487312 - B1_Mus1 SINE Alu 0 148 2 2 1241 183 129 0 0 chr3 86112472 86112503 -73487280 + (TC)n Simple_repeat Simple_repeat 2 32 0 2 1241 350 286 76 23 chr3 86112503 86112606 -73487177 + L1M4b LINE L1 1760 1871 -5463 2 1241 381 43 0 0 chr3 86112606 86112653 -73487130 + (CA)n Simple_repeat Simple_repeat 2 48 0 2 1241 350 286 76 23 chr3 86112653 86112721 -73487062 + L1M4b LINE L1 1872 1939 -5395 2 1241 288 0 0 0 chr3 86112741 86112773 -73487010 + (TGAA)n Simple_repeat Simple_repeat 2 33 0 2 1241 985 282 148 14 chr3 86112849 86113259 -73486524 - Lx7 LINE L1 -487 7209 6740 2 1241 1369 71 22 0 chr3 86113272 86113455 -73486328 - B2_Mm2 SINE B2 -8 187 1 2 1241 321 242 15 0 chr3 86113710 86113776 -73486007 - ID4_ SINE ID -15 68 2 2 1242 452 86 14 0 chr3 86114613 86114683 -73485100 + (TC)n Simple_repeat Simple_repeat 2 72 0 2 1242 468 143 0 0 chr3 86114682 86114766 -73485017 + (TA)n Simple_repeat Simple_repeat 1 84 0 2 1242 214 276 0 17 chr3 86114908 86114967 -73484816 + (CA)n Simple_repeat Simple_repeat 1 58 0 3 1242 21 36 0 0 chr3 86115137 86115165 -73484618 + AT_rich Low_complexity Low_complexity 1 28 0 3 1242 269 362 101 7 chr3 86116342 86116463 -73483320 - L2b LINE L2 -1 3386 3266 3 1242 508 262 42 14 chr3 86116676 86116819 -73482964 - B1F1 SINE Alu -2 147 1 3 1242 340 296 90 48 chr3 86116819 86116849 -73482934 - B4A SINE B4 -209 83 47 3 1242 235 335 75 87 chr3 86117008 86117181 -73482602 - MER5B DNA MER1_type -1 177 7 3 1242 375 284 85 93 chr3 86118437 86118685 -73481098 - B4A SINE B4 -46 246 1 3 1242 709 216 0 56 chr3 86118744 86118886 -73480897 + B1_Mur1 SINE Alu 2 135 -14 3 1242 369 0 0 0 chr3 86118886 86118927 -73480856 + (CAAA)n Simple_repeat Simple_repeat 4 44 0 3 1242 860 202 122 0 chr3 86119519 86119707 -73480076 - B3 SINE B2 -5 211 1 3 1242 360 0 0 0 chr3 86121754 86121794 -73477989 + (TG)n Simple_repeat Simple_repeat 2 41 0 3 1242 382 248 157 0 chr3 86121794 86121915 -73477868 - B1_Mur1 SINE Alu -9 140 1 3 1242 210 71 0 0 chr3 86122205 86122233 -73477550 + (GAAAA)n Simple_repeat Simple_repeat 2 29 0 3 1242 51 27 0 13 chr3 86122632 86122677 -73477106 + AT_rich Low_complexity Low_complexity 1 45 0 3 1242 1052 47 0 0 chr3 86122677 86122805 -73476978 - B1_Mus1 SINE Alu -19 129 2 3 1242 51 27 0 13 chr3 86122805 86122835 -73476948 + AT_rich Low_complexity Low_complexity 1 30 0 3 1242 533 227 33 8 chr3 86123084 86123204 -73476579 - ID_B1 SINE B4 0 224 102 3 1242 308 250 138 0 chr3 86124024 86124104 -73475679 - B3 SINE B2 -11 205 115 3 1242 248 0 0 30 chr3 86124716 86124749 -73475034 + (TTA)n Simple_repeat Simple_repeat 1 32 0 3 1242 5853 99 44 9 chr3 86124769 86125662 -73474121 - Lx3B LINE L1 -3 6970 6047 3 1242 23 78 0 0 chr3 86125878 86125929 -73473854 + AT_rich Low_complexity Low_complexity 1 51 0 3 1242 1600 26 0 25 chr3 86126022 86126219 -73473564 + B2_Mm1a SINE B2 2 193 0 3 1242 1185 43 30 6 chr3 86126219 86126383 -73473400 + B2_Mm2 SINE B2 28 195 0 3 1242 41 58 0 0 chr3 86126444 86126513 -73473270 + AT_rich Low_complexity Low_complexity 1 69 0 3 1242 1154 308 125 19 chr3 86126594 86127176 -73472607 - Lx8 LINE L1 -117 7356 6713 3 1242 409 229 156 0 chr3 86127197 86127293 -73472490 - B1F SINE Alu -32 117 7 3 1242 370 286 150 0 chr3 86128203 86128343 -73471440 + MER58B DNA MER1_type 177 337 -4 3 1242 275 326 34 0 chr3 86128548 86128637 -73471146 + Lx8 LINE L1 6661 6752 -721 3 1242 267 79 0 0 chr3 86128809 86128847 -73470936 + (CCAA)n Simple_repeat Simple_repeat 2 39 0 3 1242 354 243 42 49 chr3 86129383 86129526 -73470257 - B1F SINE Alu -7 142 1 3 1242 29 60 0 0 chr3 86130181 86130231 -73469552 + AT_rich Low_complexity Low_complexity 1 50 0 3 1242 693 150 70 8 chr3 86130245 86130373 -73469410 - B1_Mm SINE Alu -10 137 2 3 1242 269 319 96 41 chr3 86130514 86130816 -73468967 - MLT1A1 LTR MaLR -16 392 19 3 1242 28 29 0 0 chr3 86131014 86131049 -73468734 + AT_rich Low_complexity Low_complexity 1 35 0 3 1242 524 246 87 0 chr3 86131840 86131966 -73467817 - B1_Mus2 SINE Alu -9 138 2 3 1242 23 68 0 0 chr3 86132038 86132082 -73467701 + AT_rich Low_complexity Low_complexity 1 44 0 3 1242 37920 31 1 1 chr3 86133245 86140338 -73459445 - L1Md_T LINE L1 0 6585 1 3 1242 281 145 77 46 chr3 86140778 86140843 -73458940 - MurSatRep1 Unknown Unknown -1856 281 215 3 1242 405 364 38 9 chr3 86141034 86141245 -73458538 + MER58A DNA MER1_type 7 223 -1 3 1242 210 37 0 0 chr3 86143201 86143228 -73456555 + (TTTTG)n Simple_repeat Simple_repeat 5 31 0 3 1242 779 152 45 8 chr3 86143228 86143361 -73456422 - B1_Mur4 SINE Alu -12 138 1 3 1242 305 299 0 0 chr3 86143400 86143471 -73456312 - ID4 SINE ID -72 80 10 3 1242 298 360 103 26 chr3 86143507 86143624 -73456159 + PB1 SINE Alu 2 127 0 3 1242 304 185 49 0 chr3 86143660 86143741 -73456042 + (CATA)n Simple_repeat Simple_repeat 4 88 0 3 1242 1188 103 0 15 chr3 86144415 86144613 -73455170 - Lx2A1 LINE L1 0 7008 6814 3 1242 21 57 0 0 chr3 86144686 86144721 -73455062 + AT_rich Low_complexity Low_complexity 1 35 0 3 1242 476 271 19 0 chr3 86145804 86145911 -73453872 + RSINE1 SINE B4 3 111 -54 3 1242 1071 167 124 4 chr3 86146479 86146713 -73453070 + Lx6 LINE L1 7199 7460 0 3 1242 5979 209 93 31 chr3 86146934 86148412 -73451371 - Lx7 LINE L1 0 7696 6128 3 1242 518 273 178 15 chr3 86148479 86148597 -73451186 - RMER21A LTR ERV1 -258 689 544 3 1242 447 35 0 0 chr3 86148597 86148654 -73451129 + (TAGA)n Simple_repeat Simple_repeat 3 59 0 3 1242 518 273 178 15 chr3 86148654 86148732 -73451051 - RMER21A LTR ERV1 -404 543 462 3 1242 315 49 0 0 chr3 86148967 86149008 -73450775 + (TG)n Simple_repeat Simple_repeat 2 42 0 3 1242 236 356 23 58 chr3 86149694 86149867 -73449916 - MER34A LTR ERV1 -404 167 1 3 1242 21 57 0 0 chr3 86150025 86150060 -73449723 + AT_rich Low_complexity Low_complexity 1 35 0 3 1242 630 60 0 0 chr3 86151586 86151669 -73448114 + (GA)n Simple_repeat Simple_repeat 2 84 0 3 1242 25 0 0 0 chr3 86151812 86151837 -73447946 + AT_rich Low_complexity Low_complexity 1 25 0 3 1242 27 0 0 0 chr3 86151981 86152008 -73447775 + AT_rich Low_complexity Low_complexity 1 27 0 3 1242 360 291 13 0 chr3 86153303 86153382 -73446401 - ID4_ SINE ID -3 80 1 3 1242 590 55 33 0 chr3 86155518 86155609 -73444174 - L1Md_F3 LINE L1 0 6584 6491 3 1242 249 250 63 38 chr3 86157055 86157134 -73442649 + ID4_ SINE ID 3 83 0 3 1242 610 262 47 47 chr3 86157209 86157401 -73442382 - ID_B1 SINE B4 -11 213 22 3 1242 259 235 43 29 chr3 86158533 86158603 -73441180 - MIR SINE MIR -181 81 11 3 1242 247 261 100 22 chr3 86158732 86158822 -73440961 - PB1D10 SINE Alu -7 110 14 3 1242 25 0 0 0 chr3 86159622 86159647 -73440136 + AT_rich Low_complexity Low_complexity 1 25 0 3 1242 25 0 0 0 chr3 86159829 86159854 -73439929 + AT_rich Low_complexity Low_complexity 1 25 0 3 1242 700 109 130 32 chr3 86161037 86161160 -73438623 + B1_Mus1 SINE Alu 1 135 -13 3 1242 251 231 19 0 chr3 86161348 86161400 -73438383 - L2a LINE L2 -90 3336 3284 3 1242 247 253 84 0 chr3 86161490 86161573 -73438210 - L2a LINE L2 -537 2882 2793 3 1242 459 264 78 14 chr3 86161573 86161715 -73438068 + RSINE1 SINE B4 2 152 -13 3 1242 198 0 0 0 chr3 86161725 86161747 -73438036 + (TG)n Simple_repeat Simple_repeat 2 23 0 3 1242 28 0 0 0 chr3 86161781 86161809 -73437974 + AT_rich Low_complexity Low_complexity 1 28 0 3 1242 323 304 65 87 chr3 86161862 86162046 -73437737 - MLT1G LTR MaLR -3 588 409 3 1242 251 327 61 25 chr3 86162366 86162529 -73437254 - L2a LINE L2 -697 2722 2554 3 1242 330 347 95 35 chr3 86162697 86163035 -73436748 - L2a LINE L2 -1115 2304 1947 3 1242 854 230 71 10 chr3 86163068 86163266 -73436517 + ID_B1 SINE B4 4 213 -11 3 1242 288 130 0 0 chr3 86164334 86164380 -73435403 + (TCCC)n Simple_repeat Simple_repeat 3 48 0 3 1242 216 0 0 0 chr3 86164380 86164404 -73435379 + (T)n Simple_repeat Simple_repeat 1 24 0 3 1242 21 57 0 0 chr3 86165023 86165058 -73434725 + AT_rich Low_complexity Low_complexity 1 35 0 3 1242 285 209 163 11 chr3 86165283 86165375 -73434408 - B3A SINE B2 -72 126 21 3 1242 322 281 96 7 chr3 86165472 86165608 -73434175 - L1MC4 LINE L1 -509 7533 7386 3 1242 261 0 0 0 chr3 86166379 86166408 -73433375 + (T)n Simple_repeat Simple_repeat 1 29 0 3 1242 213 324 0 0 chr3 86167286 86167357 -73432426 + ID4 SINE ID 3 73 -10 3 1242 1140 68 0 0 chr3 86167649 86167795 -73431988 + B1_Mus2 SINE Alu 2 147 0 3 1242 288 77 0 0 chr3 86167796 86167835 -73431948 + (GAAAA)n Simple_repeat Simple_repeat 2 40 0 3 1242 990 87 72 0 chr3 86167896 86168034 -73431749 - B1_Mus1 SINE Alu 0 148 1 3 1242 1288 113 11 0 chr3 86168159 86168345 -73431438 + B2_Mm1t SINE B2 3 190 -3 3 1242 740 252 0 0 chr3 86168392 86168547 -73431236 + U1 snRNA snRNA 10 164 -1 3 1242 316 294 10 0 chr3 86168702 86168804 -73430979 + L1MB8 LINE L1 6075 6177 -1 3 1242 2044 146 66 26 chr3 86168892 86169271 -73430512 - ORR1B1 LTR MaLR 0 394 1 3 1242 367 320 70 117 chr3 86169751 86169907 -73429876 - L1ME2z LINE L1 -425 6019 5860 3 1242 242 61 0 0 chr3 86169907 86169940 -73429843 - ORR1B1 LTR MaLR 0 394 362 3 1242 367 320 70 117 chr3 86169940 86170197 -73429586 - L1ME2z LINE L1 -425 5859 5595 3 1242 235 297 0 15 chr3 86170213 86170278 -73429505 - ID4 SINE ID -1 82 19 3 1242 342 0 0 0 chr3 86170535 86170573 -73429210 + (CA)n Simple_repeat Simple_repeat 2 39 0 3 1242 21 0 0 0 chr3 86170851 86170872 -73428911 + AT_rich Low_complexity Low_complexity 1 21 0 3 1242 333 205 58 46 chr3 86171712 86171799 -73427984 + B4A SINE B4 1 88 -204 3 1242 752 221 2 24 chr3 86171826 86172016 -73427767 + B3 SINE B2 1 176 -19 3 1242 495 304 116 0 chr3 86172012 86172193 -73427590 + B4 SINE B4 80 281 -11 3 1242 222 118 0 0 chr3 86172214 86172248 -73427535 + (TCCC)n Simple_repeat Simple_repeat 4 37 0 3 1242 21 0 0 0 chr3 86172392 86172413 -73427370 + AT_rich Low_complexity Low_complexity 1 21 0 3 1242 690 279 57 5 chr3 86172926 86173135 -73426648 - ID_B1 SINE B4 -2 222 3 3 1242 305 118 59 0 chr3 86173481 86173532 -73426251 - BC1_Mm scRNA scRNA -61 91 38 3 1242 212 286 36 0 chr3 86173701 86173757 -73426026 - B1_Mur4 SINE Alu -56 94 37 3 1242 350 137 77 64 chr3 86173779 86173857 -73425926 - MT2B2 LTR ERVL -325 259 181 3 1242 767 100 27 9 chr3 86173838 86173949 -73425834 - RMER6C LTR ERVK -577 113 1 3 1242 476 224 108 139 chr3 86174794 86175017 -73424766 - B3 SINE B2 0 216 1 4 1242 681 47 0 0 chr3 86175251 86175336 -73424447 + (TCCC)n Simple_repeat Simple_repeat 1 85 0 4 1242 23 54 0 0 chr3 86176161 86176198 -73423585 + AT_rich Low_complexity Low_complexity 1 37 0 4 1242 395 72 0 18 chr3 86177685 86177742 -73422041 - ORR1B1 LTR MaLR 0 394 339 4 1242 236 188 78 0 chr3 86177755 86177819 -73421964 - L1M2 LINE L1 -3330 2813 2745 4 1242 1536 122 54 23 chr3 86177940 86178201 -73421582 - ORR1A4 LTR MaLR -54 275 7 4 1242 267 31 0 0 chr3 86180075 86180107 -73419676 + (GA)n Simple_repeat Simple_repeat 1 32 0 4 1242 23 0 0 0 chr3 86181868 86181891 -73417892 + AT_rich Low_complexity Low_complexity 1 23 0 4 1242 259 354 0 40 chr3 86182430 86182530 -73417253 - BC1_Mm scRNA scRNA -55 97 2 4 1242 33 0 0 0 chr3 86182690 86182723 -73417060 + AT_rich Low_complexity Low_complexity 1 33 0 4 1242 22 56 0 0 chr3 86183266 86183302 -73416481 + AT_rich Low_complexity Low_complexity 1 36 0 4 1242 559 326 5 36 chr3 86183847 86184070 -73415713 - ID_B1 SINE B4 -8 216 1 4 1242 420 20 0 0 chr3 86184083 86184132 -73415651 + (CA)n Simple_repeat Simple_repeat 2 50 0 4 1242 350 238 25 0 chr3 86184322 86184402 -73415381 - PB1D10 SINE Alu -11 106 25 4 1242 24 32 0 0 chr3 86184488 86184519 -73415264 + AT_rich Low_complexity Low_complexity 1 31 0 4 1242 228 293 72 12 chr3 86185096 86185179 -73414604 - B1F SINE Alu -41 108 21 4 1242 28 29 0 0 chr3 86185420 86185455 -73414328 + AT_rich Low_complexity Low_complexity 1 35 0 4 1242 196 104 20 40 chr3 86186921 86186971 -73412812 + T-rich Low_complexity Low_complexity 2 50 0 4 1242 819 50 0 0 chr3 86188168 86188269 -73411514 + U6 snRNA snRNA 1 101 -6 4 1242 21 0 0 0 chr3 86189335 86189356 -73410427 + AT_rich Low_complexity Low_complexity 1 21 0 4 1242 24 0 0 0 chr3 86191358 86191382 -73408401 + AT_rich Low_complexity Low_complexity 1 24 0 4 1242 260 259 23 69 chr3 86191456 86191543 -73408240 + PB1 SINE Alu 23 105 -22 4 1242 266 311 37 96 chr3 86191583 86191631 -73408152 + B1F SINE Alu 21 147 -2 4 1242 374 230 35 0 chr3 86191631 86191718 -73408065 + ID_B1 SINE B4 134 223 -1 4 1242 2236 115 164 8 chr3 86192540 86192942 -73406841 - Lx3A LINE L1 -7 6974 6510 4 1242 330 26 0 0 chr3 86193205 86193244 -73406539 + (TAAAA)n Simple_repeat Simple_repeat 4 42 0 4 1242 520 111 71 0 chr3 86193360 86193459 -73406324 + Lx3A LINE L1 6873 6978 -3 4 1242 392 220 140 27 chr3 86193463 86193720 -73406063 + L1M2 LINE L1 1777 2062 -4787 4 1242 1416 304 121 21 chr3 86193778 86194819 -73404964 + L1M2 LINE L1 4794 5938 -907 4 1242 480 286 0 0 chr3 86194951 86195063 -73404720 + ID_B1 SINE B4 107 218 -6 4 1242 1099 36 7 0 chr3 86195442 86195582 -73404201 - B1_Mus2 SINE Alu 0 147 7 4 1242 2477 43 0 0 chr3 86195595 86195898 -73403885 - L1Md_A LINE L1 0 6582 6280 4 1242 252 100 0 0 chr3 86196603 86196643 -73403140 + (A)n Simple_repeat Simple_repeat 1 40 0 4 1242 24 53 0 0 chr3 86197044 86197082 -73402701 + AT_rich Low_complexity Low_complexity 1 38 0 4 1242 27 0 0 0 chr3 86197308 86197335 -73402448 + AT_rich Low_complexity Low_complexity 1 27 0 4 1242 2039 184 88 56 chr3 86199736 86200237 -73399546 + Lx7 LINE L1 4662 5181 -699 4 1242 711 114 53 13 chr3 86200237 86200388 -73399395 + Lx2 LINE L1 6840 6996 -1 4 1242 2039 184 88 56 chr3 86200388 86200400 -73399383 + Lx7 LINE L1 5182 5191 -689 4 1242 5856 235 68 27 chr3 86200405 86201760 -73398023 + Lx7 LINE L1 5863 7354 -342 4 1242 189 0 0 0 chr3 86201760 86201781 -73398002 + (TTTTG)n Simple_repeat Simple_repeat 1 21 0 4 1242 5856 238 72 25 chr3 86201781 86202093 -73397690 + Lx7 LINE L1 7355 7696 0 4 1242 517 353 143 28 chr3 86202872 86203382 -73396401 - L2 LINE L2 -568 2851 2283 4 1242 416 339 104 56 chr3 86203384 86203588 -73396195 - L2 LINE L2 -1363 2056 1846 4 1242 225 108 0 0 chr3 86203588 86203625 -73396158 + (CA)n Simple_repeat Simple_repeat 2 38 0 4 1242 416 339 104 56 chr3 86203625 86203958 -73395825 - L2 LINE L2 -1574 1845 1494 4 1242 200 306 71 0 chr3 86204141 86204226 -73395557 - L2 LINE L2 -2510 909 819 4 1242 1104 94 0 0 chr3 86204559 86204718 -73395065 + (TCC)n Simple_repeat Simple_repeat 2 160 0 4 1242 567 43 0 0 chr3 86204718 86204788 -73394995 + (TC)n Simple_repeat Simple_repeat 1 70 0 4 1242 8410 92 7 3 chr3 86204872 86206778 -73393005 - L1_Mus3 LINE L1 0 6638 4723 4 1242 326 126 148 104 chr3 86206802 86206917 -73392866 - Lx3A LINE L1 -8 6973 6854 4 1242 472 215 0 0 chr3 86206927 86207020 -73392763 - L1_Mur3 LINE L1 -182 5698 5606 4 1242 421 236 11 0 chr3 86207015 86207104 -73392679 - Lx7 LINE L1 -803 6893 6804 4 1242 497 103 0 0 chr3 86207978 86208056 -73391727 - Lx2 LINE L1 0 6997 6920 4 1242 3310 277 72 9 chr3 86208058 86208969 -73390814 - Lx8 LINE L1 -234 7239 6271 4 1242 324 245 106 62 chr3 86208969 86209082 -73390701 - Lx8 LINE L1 -1099 6374 6257 4 1242 29 0 0 0 chr3 86209115 86209144 -73390639 + AT_rich Low_complexity Low_complexity 1 29 0 4 1242 23 33 0 0 chr3 86209444 86209474 -73390309 + AT_rich Low_complexity Low_complexity 1 30 0 4 1242 1181 120 0 10 chr3 86209527 86209721 -73390062 + Lx3A LINE L1 6776 6967 -14 4 1242 204 40 0 0 chr3 86209721 86209746 -73390037 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 4 1242 395 38 0 19 chr3 86209774 86209828 -73389955 + (TCCA)n Simple_repeat Simple_repeat 1 53 0 4 1242 225 0 0 0 chr3 86209857 86209882 -73389901 + (TG)n Simple_repeat Simple_repeat 2 26 0 4 1242 1887 171 42 0 chr3 86210918 86211251 -73388532 + MTC LTR MaLR 26 372 -49 4 1242 338 283 74 19 chr3 86211814 86211922 -73387861 - B1F2 SINE Alu -13 136 23 4 1242 202 270 0 53 chr3 86212061 86212155 -73387628 + GA-rich Low_complexity Low_complexity 2 90 0 4 1242 470 250 133 0 chr3 86213747 86213867 -73385916 - ID_B1 SINE B4 0 224 89 4 1242 744 233 18 86 chr3 86213891 86214112 -73385671 - B3 SINE B2 -10 206 1 4 1242 31 0 0 0 chr3 86214493 86214524 -73385259 + AT_rich Low_complexity Low_complexity 1 31 0 4 1242 543 319 97 25 chr3 86214669 86214865 -73384918 + MER58A DNA MER1_type 6 215 -9 4 1242 241 61 0 0 chr3 86215091 86215124 -73384659 + L1Md_F2 LINE L1 5275 5307 -576 4 1242 2105 36 0 0 chr3 86215114 86215365 -73384418 - L1Md_A LINE L1 -526 6056 5806 4 1242 1497 45 20 5 chr3 86215365 86215564 -73384219 + L1Md_F3 LINE L1 6383 6584 0 4 1242 2391 51 0 0 chr3 86215564 86215856 -73383927 + L1Md_F2 LINE L1 5294 5585 -298 4 1242 8111 42 5 4 chr3 86215857 86216849 -73382934 + L1Md_F2 LINE L1 5587 6579 -3 4 1242 1983 53 0 0 chr3 86216857 86217101 -73382682 + L1_Mus1 LINE L1 6324 6567 0 4 1242 317 317 122 0 chr3 86217810 86217974 -73381809 - L1ME3A LINE L1 -292 5881 5698 4 1242 7419 79 4 1 chr3 86218023 86219082 -73380701 + L1_Mus1 LINE L1 5496 6556 -11 4 1242 801 243 50 62 chr3 86219082 86219096 -73380687 + ORR1D2-int LTR MaLR 979 992 -378 4 1242 567 0 0 0 chr3 86219096 86219159 -73380624 + (GA)n Simple_repeat Simple_repeat 1 63 0 4 1242 801 243 50 62 chr3 86219159 86219385 -73380398 + ORR1D2-int LTR MaLR 993 1215 -155 4 1242 802 279 169 54 chr3 86219393 86219707 -73380076 + ORR1D2 LTR MaLR 1 350 -20 4 1242 309 272 111 13 chr3 86219824 86219977 -73379806 - L1MDb LINE L1 -5071 1338 1171 4 1242 926 237 143 28 chr3 86220226 86220513 -73379270 - MTE2b LTR MaLR -59 320 1 4 1242 270 0 0 0 chr3 86221246 86221276 -73378507 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 4 1242 2402 48 10 3 chr3 86222393 86222706 -73377077 + L1Md_F3 LINE L1 6270 6584 0 4 1242 610 342 18 31 chr3 86223752 86223978 -73375805 - B4A SINE B4 -20 272 50 4 1242 29 0 0 0 chr3 86224539 86224568 -73375215 + AT_rich Low_complexity Low_complexity 1 29 0 4 1242 999 93 0 28 chr3 86225474 86225618 -73374165 - B1_Mus1 SINE Alu -6 142 3 4 1242 2966 99 39 0 chr3 86225677 86226119 -73373664 + Lx2 LINE L1 6539 6997 0 4 1242 2253 48 0 0 chr3 86226261 86226534 -73373249 - L1Md_A LINE L1 0 6582 6310 4 1242 30 0 0 0 chr3 86227474 86227504 -73372279 + AT_rich Low_complexity Low_complexity 1 30 0 4 1242 525 316 29 76 chr3 86227562 86227733 -73372050 - RSINE1 SINE B4 0 165 3 4 1242 663 313 69 81 chr3 86227890 86228151 -73371632 + B4A SINE B4 35 292 0 4 1242 342 98 0 0 chr3 86228159 86228210 -73371573 + (TG)n Simple_repeat Simple_repeat 2 52 0 4 1242 342 302 52 6 chr3 86228580 86228753 -73371030 - L1MA8 LINE L1 -78 6213 6033 4 1242 1958 55 0 42 chr3 86228840 86229124 -73370659 + L1_Mus1 LINE L1 6296 6567 0 4 1242 1301 95 294 3 chr3 86229346 86229672 -73370111 - BGLII LTR ERVK 0 421 1 4 1242 207 0 0 0 chr3 86229701 86229724 -73370059 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 4 1242 816 184 7 0 chr3 86229724 86229860 -73369923 - B1_Mur2 SINE Alu -12 137 1 4 1242 205 317 19 29 chr3 86230791 86230895 -73368888 + L2c LINE L2 2336 2438 -981 4 1242 211 368 43 50 chr3 86231510 86231650 -73368133 + L2c LINE L2 3247 3385 -2 4 1242 249 109 0 0 chr3 86232107 86232153 -73367630 + (TTTTTG)n Simple_repeat Simple_repeat 3 48 0 4 1242 1231 41 0 0 chr3 86232155 86232301 -73367482 - B1_Mus1 SINE Alu 0 148 3 4 1242 370 218 18 98 chr3 86232353 86232465 -73367318 - RMER4A LTR ERVK 0 466 364 4 1242 2349 152 21 42 chr3 86232462 86232896 -73366887 - RMER4B LTR ERVK -156 429 5 4 1242 25 31 0 0 chr3 86233413 86233445 -73366338 + AT_rich Low_complexity Low_complexity 1 32 0 4 1242 5085 147 20 23 chr3 86234593 86235586 -73364197 - L1_Mur1 LINE L1 -2022 3864 2875 4 1242 2550 75 6 0 chr3 86235587 86235922 -73363861 - Lx3_Mus LINE L1 0 7009 6673 4 1242 4870 48 18 0 chr3 86236606 86237216 -73362567 - L1Md_F2 LINE L1 0 6582 5962 4 1242 369 62 0 0 chr3 86237229 86237277 -73362506 + (CATA)n Simple_repeat Simple_repeat 4 51 0 4 1242 251 309 0 105 chr3 86237352 86237457 -73362326 - B4 SINE B4 0 292 199 4 1242 518 264 27 0 chr3 86237714 86237824 -73361959 + B1F2 SINE Alu 26 138 -11 4 1242 218 220 34 0 chr3 86237911 86237970 -73361813 + (TG)n Simple_repeat Simple_repeat 2 62 0 4 1242 369 223 80 9 chr3 86237979 86238092 -73361691 + Lx7 LINE L1 7560 7680 -16 5 1242 1213 262 46 21 chr3 86238403 86238844 -73360939 - L1MA4 LINE L1 -370 5930 5512 5 1242 413 206 22 0 chr3 86238846 86238938 -73360845 + L1_Mm LINE L1 5348 5441 -442 5 1242 342 269 9 0 chr3 86239162 86239257 -73360526 - B1F SINE Alu -9 140 14 5 1242 182 327 88 88 chr3 86239579 86239693 -73360090 - MIR SINE MIR -57 151 38 5 1242 504 118 0 0 chr3 86241053 86241121 -73358662 - L1VL4 LINE L1 -6051 251 184 5 1242 22 0 0 0 chr3 86241132 86241154 -73358629 + AT_rich Low_complexity Low_complexity 1 22 0 5 1242 22 35 0 0 chr3 86241198 86241227 -73358556 + AT_rich Low_complexity Low_complexity 1 29 0 5 1242 256 279 65 8 chr3 86241527 86241650 -73358133 - B1F1 SINE Alu -18 131 2 5 1242 22 0 0 0 chr3 86241656 86241678 -73358105 + AT_rich Low_complexity Low_complexity 1 22 0 5 1242 239 175 70 0 chr3 86241881 86241938 -73357845 - L1M5 LINE L1 -3108 3038 2978 5 1242 1037 148 98 132 chr3 86243270 86243404 -73356379 + URR1A DNA MER1_type 1 146 -80 5 1242 1229 20 7 0 chr3 86243404 86243550 -73356233 + B1_Mus2 SINE Alu 1 147 0 5 1242 1037 148 98 132 chr3 86243550 86243649 -73356134 + URR1A DNA MER1_type 147 226 0 5 1242 26 30 0 0 chr3 86245068 86245101 -73354682 + AT_rich Low_complexity Low_complexity 1 33 0 5 1243 341 81 65 0 chr3 86245902 86245964 -73353819 - Lx3_Mus LINE L1 -8 7001 6936 5 1243 2452 286 107 44 chr3 86245969 86247049 -73352734 - Lx8 LINE L1 -30 7443 6297 5 1243 185 0 40 0 chr3 86247153 86247178 -73352605 + (CA)n Simple_repeat Simple_repeat 1 26 0 5 1243 1186 276 32 15 chr3 86248166 86248508 -73351275 + Lx5 LINE L1 6675 7022 -28 5 1243 560 203 24 0 chr3 86249047 86249170 -73350613 - RMER1C Other Other -2 1340 1215 5 1243 201 39 0 0 chr3 86250152 86250178 -73349605 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 5 1243 29 28 0 0 chr3 86250311 86250347 -73349436 + AT_rich Low_complexity Low_complexity 1 36 0 5 1243 352 158 13 13 chr3 86252038 86252115 -73347668 + CT-rich Low_complexity Low_complexity 4 80 0 5 1243 25 51 0 0 chr3 86253431 86253470 -73346313 + AT_rich Low_complexity Low_complexity 1 39 0 5 1243 831 197 19 42 chr3 86254094 86254306 -73345477 - B3 SINE B2 -9 207 1 5 1243 1163 55 7 0 chr3 86254764 86254910 -73344873 + B1_Mus2 SINE Alu 1 147 0 5 1243 208 150 25 0 chr3 86254910 86254950 -73344833 + (CAAA)n Simple_repeat Simple_repeat 4 44 0 5 1243 273 261 11 22 chr3 86255069 86255159 -73344624 + (TATG)n Simple_repeat Simple_repeat 2 90 0 5 1243 542 292 53 6 chr3 86255170 86255339 -73344444 - B4A SINE B4 -6 286 110 5 1243 21 104 0 0 chr3 86256568 86256645 -73343138 + AT_rich Low_complexity Low_complexity 1 77 0 5 1243 254 329 160 27 chr3 86256696 86256915 -73342868 - MIR SINE MIR 0 262 15 5 1243 475 162 1 3 chr3 86257188 86257276 -73342507 + B1_Mur4 SINE Alu 41 127 -20 5 1243 252 77 0 0 chr3 86257296 86257335 -73342448 + (TTTTTG)n Simple_repeat Simple_repeat 3 41 0 5 1243 989 53 0 15 chr3 86257336 86257470 -73342313 - B1_Mus1 SINE Alu 0 148 17 5 1243 6179 42 0 5 chr3 86258010 86258798 -73340985 - L1_Mm LINE L1 -3140 2743 1960 5 1243 288 299 203 56 chr3 86259443 86259749 -73340034 + RLTR15 LTR ERVK 17 299 -229 5 1243 1137 68 0 20 chr3 86260023 86260174 -73339609 - B1_Mus1 SINE Alu 0 148 1 5 1243 313 355 11 0 chr3 86260350 86260443 -73339340 + RMER1A Other Other 168 261 -769 5 1243 2482 223 230 40 chr3 86260444 86260598 -73339185 + RMER1A Other Other 3 229 -801 5 1243 600 73 0 0 chr3 86260598 86260680 -73339103 + (GA)n Simple_repeat Simple_repeat 2 83 0 5 1243 2482 223 230 40 chr3 86260680 86261380 -73338403 + RMER1A Other Other 230 1019 -11 5 1243 248 0 31 0 chr3 86261550 86261582 -73338201 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 5 1243 931 74 0 0 chr3 86261582 86261703 -73338080 - B1_Mm SINE Alu -10 137 17 5 1243 373 242 228 24 chr3 86261744 86261867 -73337916 - MLT1A0 LTR MaLR -216 149 2 5 1243 300 299 176 17 chr3 86262460 86262579 -73337204 + B1F SINE Alu 12 149 0 5 1243 1044 266 139 44 chr3 86262722 86263386 -73336397 - L1ME1 LINE L1 -134 6045 5319 5 1243 3536 228 46 40 chr3 86263389 86264198 -73335585 - Lx9 LINE L1 0 7644 6824 5 1243 1986 187 50 7 chr3 86264198 86264602 -73335181 - MTC LTR MaLR 0 421 1 5 1243 3536 228 46 40 chr3 86264602 86264732 -73335051 - Lx9 LINE L1 -821 6823 6700 5 1243 4838 88 30 25 chr3 86264732 86265468 -73334315 + Lx2 LINE L1 6258 6997 0 5 1243 754 246 19 15 chr3 86265488 86265694 -73334089 - Lx9 LINE L1 -749 6895 6689 5 1243 380 274 87 24 chr3 86265886 86266092 -73333691 - L1M3 LINE L1 -2323 3817 3599 5 1243 714 222 132 17 chr3 86266274 86266448 -73333335 - B4 SINE B4 -2 290 97 5 1243 180 0 0 0 chr3 86266454 86266474 -73333309 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 5 1243 509 149 74 12 chr3 86266475 86266638 -73333145 - RMER17C LTR ERVK -135 275 103 5 1243 735 222 53 102 chr3 86266789 86267015 -73332768 + B3 SINE B2 2 216 0 5 1243 453 264 1 46 chr3 86267266 86267389 -73332394 - PB1D10 SINE Alu 0 117 1 5 1243 259 284 123 64 chr3 86267389 86267780 -73332003 - L1MEc LINE L1 -3192 3127 2714 5 1243 242 315 0 27 chr3 86267776 86267851 -73331932 - L1MEc LINE L1 -5910 490 418 5 1243 371 374 64 0 chr3 86267906 86268093 -73331690 - L1MEc LINE L1 -6094 306 108 5 1243 407 155 19 19 chr3 86268477 86268582 -73331201 + (TA)n Simple_repeat Simple_repeat 2 106 0 5 1243 266 246 31 0 chr3 86268845 86268931 -73330852 + L1MB7 LINE L1 5879 5971 -193 5 1243 393 277 0 40 chr3 86268932 86269056 -73330727 + PB1D7 SINE Alu 1 119 -1 5 1243 205 270 32 0 chr3 86269058 86269121 -73330662 + GA-rich Low_complexity Low_complexity 1 65 0 5 1243 1681 248 49 32 chr3 86269230 86269696 -73330087 + MER68 LTR ERVL 1 474 -89 5 1243 1147 61 0 13 chr3 86269816 86269966 -73329817 - B1_Mus1 SINE Alu 0 148 1 5 1243 2124 116 38 10 chr3 86271722 86272036 -73327747 - ORR1A2 LTR MaLR 0 327 5 5 1243 32 26 0 0 chr3 86274211 86274250 -73325533 + AT_rich Low_complexity Low_complexity 1 39 0 5 1243 265 300 11 0 chr3 86274266 86274356 -73325427 - L1MA5 LINE L1 -31 6269 6179 5 1243 314 292 136 30 chr3 86274369 86274634 -73325149 - L1MA5 LINE L1 -7 6293 6001 5 1243 6328 113 41 7 chr3 86274618 86275614 -73324169 - Lx3_Mus LINE L1 -48 6961 5932 5 1243 3049 101 33 2 chr3 86275588 86276043 -73323740 - Lx3_Mus LINE L1 -506 6475 6007 5 1243 26 88 0 0 chr3 86276070 86276138 -73323645 + AT_rich Low_complexity Low_complexity 1 68 0 5 1243 387 175 30 20 chr3 86276225 86276324 -73323459 - L1_Mur3 LINE L1 -3470 2410 2311 5 1243 21 0 0 0 chr3 86277507 86277528 -73322255 + AT_rich Low_complexity Low_complexity 1 21 0 5 1243 180 77 0 0 chr3 86277756 86277782 -73322001 + (TG)n Simple_repeat Simple_repeat 2 27 0 5 1243 453 312 151 30 chr3 86279886 86280256 -73319527 - Cheshire DNA MER1_type -1367 1053 639 5 1243 206 0 0 65 chr3 86280409 86280440 -73319343 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 5 1243 32 26 0 0 chr3 86281342 86281381 -73318402 + AT_rich Low_complexity Low_complexity 1 39 0 5 1243 989 110 7 0 chr3 86281631 86281785 -73317998 + (TTTC)n Simple_repeat Simple_repeat 2 156 0 5 1243 790 39 0 0 chr3 86281785 86281887 -73317896 - B1_Mus2 SINE Alu -10 137 36 5 1243 495 286 28 76 chr3 86281892 86282036 -73317747 - B1_Mur1 SINE Alu -7 142 6 5 1243 509 301 32 64 chr3 86282282 86282438 -73317345 - RSINE1 SINE B4 0 165 15 5 1243 204 40 0 0 chr3 86282443 86282468 -73317315 + (CAA)n Simple_repeat Simple_repeat 2 26 0 5 1243 24 32 0 0 chr3 86283058 86283089 -73316694 + AT_rich Low_complexity Low_complexity 1 31 0 5 1243 4088 82 34 2 chr3 86283731 86284315 -73315468 - Lx3_Mus LINE L1 0 7009 6407 5 1243 341 284 129 51 chr3 86284327 86284588 -73315195 - Tigger7 DNA MER2_type -53 286 1 5 1243 198 0 0 0 chr3 86284636 86284658 -73315125 + (CAAAAA)n Simple_repeat Simple_repeat 6 27 0 5 1243 9132 20 0 0 chr3 86284683 86285739 -73314044 + L1Md_T LINE L1 4531 5586 -297 5 1243 9005 4 0 0 chr3 86285739 86286735 -73313048 + L1Md_T LINE L1 5587 6582 0 5 1243 1163 64 17 6 chr3 86286749 86286923 -73312860 + L1_Mus3 LINE L1 6457 6632 -6 5 1243 644 256 39 22 chr3 86287236 86287416 -73312367 - MTE2a LTR MaLR 0 379 197 5 1243 515 279 63 58 chr3 86287758 86287948 -73311835 + MT2B LTR ERVL 74 264 -337 5 1243 1080 63 26 8 chr3 86287839 86287999 -73311784 + B1_Mus1 SINE Alu 7 311 0 5 1243 18665 55 12 2 chr3 86288104 86291236 -73308547 - L1Md_F2 LINE L1 0 6582 3416 5 1243 696 245 37 12 chr3 86291300 86291461 -73308322 + B3 SINE B2 4 168 -48 5 1243 423 52 0 0 chr3 86291462 86291520 -73308263 + (CA)n Simple_repeat Simple_repeat 2 59 0 5 1243 250 333 13 51 chr3 86291848 86291927 -73307856 - ID4_ SINE ID 0 83 8 5 1243 420 300 82 27 chr3 86291931 86292218 -73307565 + L1ME1 LINE L1 4208 4508 -1638 5 1243 314 348 104 48 chr3 86292226 86292495 -73307288 - MLT1F2 LTR MaLR -2 558 275 5 1243 444 333 49 23 chr3 86292835 86293233 -73306550 + L1ME1 LINE L1 5191 5607 -572 5 1243 239 366 12 35 chr3 86293233 86293318 -73306465 + PB1D10 SINE Alu 6 88 -29 5 1243 417 39 0 0 chr3 86293350 86293401 -73306382 + (GA)n Simple_repeat Simple_repeat 2 52 0 5 1243 407 294 49 15 chr3 86293450 86293686 -73306097 + L1ME1 LINE L1 5649 5892 -272 5 1243 519 311 103 29 chr3 86294487 86294923 -73304860 + L1MC4 LINE L1 6613 7105 -937 5 1243 421 330 101 32 chr3 86294926 86295302 -73304481 + L1MC4 LINE L1 7269 7670 -372 5 1243 4832 122 9 5 chr3 86295757 86296492 -73303291 - Lx2 LINE L1 -288 6709 5972 5 1243 4398 18 0 0 chr3 86296529 86297022 -73302761 + MT2_Mm LTR ERVL 1 493 0 5 1243 47327 16 8 0 chr3 86297022 86302353 -73297430 + MERVL-int LTR ERVL 1 5371 -114 5 1243 412 120 13 39 chr3 86302353 86302431 -73297352 + ORR1A3-int LTR MaLR 567 642 -1321 5 1243 298 0 0 0 chr3 86302431 86302467 -73297316 + MERVL-int LTR ERVL 5450 5485 0 5 1243 4374 20 0 0 chr3 86302467 86302960 -73296823 + MT2_Mm LTR ERVL 1 493 0 5 1243 5597 163 8 0 chr3 86302968 86303936 -73295847 - Lx2 LINE L1 -3 5874 4899 5 1243 1914 150 19 0 chr3 86303936 86304250 -73295533 + Lx2 LINE L1 6678 6997 0 5 1243 234 0 0 0 chr3 86304991 86305017 -73294766 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 6 1243 1047 62 14 7 chr3 86306300 86306446 -73293337 - B1_Mus1 SINE Alu 0 148 2 6 1243 23 33 0 0 chr3 86306528 86306558 -73293225 + AT_rich Low_complexity Low_complexity 1 30 0 6 1243 775 202 64 54 chr3 86306697 86306901 -73292882 + Lx7 LINE L1 7449 7654 -42 6 1243 555 177 127 75 chr3 86306901 86307035 -73292748 + B1_Mur3 SINE Alu 9 149 0 6 1243 183 338 13 63 chr3 86307440 86307519 -73292264 - MER5B DNA MER1_type -14 164 90 6 1243 549 265 109 65 chr3 86308207 86308574 -73291209 - L1M2 LINE L1 -501 5799 5417 6 1243 306 246 85 0 chr3 86309106 86309224 -73290559 - L1MA8 LINE L1 -7 6284 6157 6 1243 272 286 20 85 chr3 86310803 86310977 -73288806 - MIRc SINE MIR -106 170 1 6 1243 186 43 0 0 chr3 86311668 86311691 -73288092 + (CAGAGA)n Simple_repeat Simple_repeat 2 24 0 6 1243 234 0 0 0 chr3 86312746 86312772 -73287011 + (CA)n Simple_repeat Simple_repeat 2 27 0 6 1243 274 287 58 0 chr3 86312874 86312961 -73286822 + L2c LINE L2 1955 2046 -1373 6 1243 216 0 0 0 chr3 86313110 86313134 -73286649 + (TG)n Simple_repeat Simple_repeat 2 25 0 6 1243 480 200 24 8 chr3 86313214 86313307 -73286476 + B1_Mur2 SINE Alu 9 102 -47 6 1243 333 0 0 0 chr3 86313307 86313344 -73286439 + (TG)n Simple_repeat Simple_repeat 2 38 0 6 1243 342 262 26 78 chr3 86313344 86313366 -73286417 + B1F SINE Alu 103 118 -31 6 1243 236 359 75 27 chr3 86313354 86313500 -73286283 - MLT1J1 LTR MaLR -270 174 22 6 1243 192 312 10 41 chr3 86313511 86313608 -73286175 + L2c LINE L2 2418 2511 -908 6 1243 566 264 19 12 chr3 86313734 86313895 -73285888 - Lx9 LINE L1 -342 7302 7141 6 1243 585 215 131 44 chr3 86313890 86314187 -73285596 + Lx9 LINE L1 7320 7642 -2 6 1243 210 71 0 0 chr3 86314297 86314325 -73285458 + (T)n Simple_repeat Simple_repeat 1 28 0 6 1243 711 197 0 52 chr3 86314332 86314487 -73285296 - B1_Mus1 SINE Alu 0 148 2 6 1243 2293 219 43 20 chr3 86315600 86316108 -73283675 - Lx6 LINE L1 -4 7456 6937 6 1243 541 248 107 54 chr3 86316110 86316408 -73283375 + Lx7 LINE L1 5922 6235 -1461 6 1243 1148 191 47 0 chr3 86316400 86316615 -73283168 + Lx6 LINE L1 6250 6474 -986 6 1243 663 351 81 36 chr3 86316746 86317104 -73282679 - MER76 LTR ERVL -302 389 16 6 1243 248 364 0 130 chr3 86317387 86317548 -73282235 + L2c LINE L2 3248 3387 0 6 1243 393 171 0 0 chr3 86318517 86318605 -73281178 + (CCA)n Simple_repeat Simple_repeat 1 88 0 6 1243 2994 100 40 4 chr3 86318669 86319120 -73280663 - L1_Mus4 LINE L1 -1 6635 6169 6 1243 5819 64 2 31 chr3 86319120 86319662 -73280121 - L1VL4 LINE L1 -1880 1679 1159 6 1243 1171 61 0 0 chr3 86319662 86319809 -73279974 - B1_Mus2 SINE Alu 0 147 1 6 1243 6484 116 2 9 chr3 86319809 86320968 -73278815 - L1VL4 LINE L1 -2401 1158 1 6 1243 1201 266 106 3 chr3 86321044 86321394 -73278389 - MTD LTR MaLR 0 419 34 6 1243 21 36 0 0 chr3 86322051 86322079 -73277704 + AT_rich Low_complexity Low_complexity 1 28 0 6 1243 219 351 35 9 chr3 86322556 86322671 -73277112 + MIRb SINE MIR 81 198 -70 6 1243 786 253 262 10 chr3 86322710 86323004 -73276779 - MTEa LTR MaLR -1 378 10 6 1243 7496 113 58 6 chr3 86323225 86324861 -73274922 - L1_Mus4 LINE L1 0 6636 4904 6 1243 356 19 0 0 chr3 86324957 86325009 -73274774 - L1_Mus4 LINE L1 -6 6630 6579 6 1243 649 83 16 32 chr3 86325012 86325136 -73274647 - L1_Mus3 LINE L1 -3 6635 6514 6 1243 399 242 51 51 chr3 86325233 86325429 -73274354 + L1MA8 LINE L1 4447 4642 -1501 6 1243 301 250 83 26 chr3 86325427 86325583 -73274200 + L1MA8 LINE L1 5207 5371 -769 6 1243 233 333 42 28 chr3 86325588 86325730 -73274053 + B1F2 SINE Alu 5 148 -1 6 1243 988 299 62 25 chr3 86325769 86326281 -73273502 + L1MA8 LINE L1 5382 5912 -379 6 1243 211 314 0 0 chr3 86327239 86327290 -73272493 + ID4_ SINE ID 28 78 -5 6 1243 262 309 6 69 chr3 86327505 86327679 -73272104 + L1MB7 LINE L1 5997 6159 -25 6 1243 517 0 24 82 chr3 86327693 86327778 -73272005 + (GAAA)n Simple_repeat Simple_repeat 3 82 0 6 1243 255 305 19 9 chr3 86327873 86327979 -73271804 - Lx8 LINE L1 -4 7469 7363 6 1243 24 32 0 0 chr3 86331039 86331070 -73268713 + AT_rich Low_complexity Low_complexity 1 31 0 6 1243 249 33 0 0 chr3 86331518 86331548 -73268235 + (TG)n Simple_repeat Simple_repeat 1 30 0 6 1243 494 308 127 45 chr3 86331579 86331933 -73267850 + Lx8 LINE L1 5780 6162 -1311 6 1243 886 262 81 21 chr3 86331933 86332167 -73267616 - B4 SINE B4 -42 250 3 6 1243 785 333 13 68 chr3 86332382 86332691 -73267092 - B4A SINE B4 0 292 1 6 1243 882 249 5 0 chr3 86333051 86333244 -73266539 - Lx6 LINE L1 -5 7455 7262 6 1243 23 33 0 0 chr3 86333248 86333278 -73266505 + AT_rich Low_complexity Low_complexity 1 30 0 6 1243 25 31 0 0 chr3 86337540 86337572 -73262211 + AT_rich Low_complexity Low_complexity 1 32 0 6 1243 29 60 0 0 chr3 86337967 86338017 -73261766 + AT_rich Low_complexity Low_complexity 1 50 0 6 1243 21 0 0 0 chr3 86338641 86338662 -73261121 + AT_rich Low_complexity Low_complexity 1 21 0 6 1243 25 51 0 0 chr3 86339098 86339137 -73260646 + AT_rich Low_complexity Low_complexity 1 39 0 6 1243 22 0 0 0 chr3 86339855 86339877 -73259906 + AT_rich Low_complexity Low_complexity 1 22 0 6 1243 506 281 126 15 chr3 86341546 86341745 -73258038 + MIR SINE MIR 21 241 -21 6 1243 1184 87 46 0 chr3 86342456 86342629 -73257154 - URR1A DNA MER1_type -1 225 45 6 1243 276 149 0 0 chr3 86344565 86344612 -73255171 + (TTG)n Simple_repeat Simple_repeat 2 48 0 6 1243 234 0 0 0 chr3 86345582 86345608 -73254175 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 6 1243 423 0 0 0 chr3 86347406 86347453 -73252330 + (TG)n Simple_repeat Simple_repeat 1 47 0 6 1243 296 64 21 0 chr3 86348700 86348747 -73251036 + (CA)n Simple_repeat Simple_repeat 2 49 0 6 1243 28 48 0 0 chr3 86349015 86349057 -73250726 + AT_rich Low_complexity Low_complexity 1 42 0 6 1243 21 36 0 0 chr3 86349353 86349381 -73250402 + AT_rich Low_complexity Low_complexity 1 28 0 6 1243 22 0 0 0 chr3 86349680 86349702 -73250081 + AT_rich Low_complexity Low_complexity 1 22 0 6 1243 630 0 0 0 chr3 86352554 86352624 -73247159 + (TC)n Simple_repeat Simple_repeat 1 70 0 6 1243 181 214 23 23 chr3 86356581 86356624 -73243159 + L2 LINE L2 2885 2927 -492 6 1243 22 35 0 0 chr3 86357215 86357244 -73242539 + AT_rich Low_complexity Low_complexity 1 29 0 6 1243 421 221 72 21 chr3 86359500 86359597 -73240186 - PB1D7 SINE Alu -7 113 12 6 1243 274 255 39 87 chr3 86359515 86359618 -73240165 - ID_B1 SINE B4 -48 176 79 6 1243 819 99 6 26 chr3 86362571 86362727 -73237056 - Lx LINE L1 0 6654 6502 6 1243 342 0 0 0 chr3 86363310 86363348 -73236435 + (TG)n Simple_repeat Simple_repeat 2 39 0 6 1243 247 296 52 81 chr3 86364981 86365117 -73234666 - MIR SINE MIR -49 213 82 6 1243 1143 224 0 0 chr3 86365638 86365852 -73233931 + B3 SINE B2 2 215 -1 6 1243 237 300 13 60 chr3 86366703 86366758 -73233025 + polypyrimidine Low_complexity Low_complexity 94 145 0 6 1243 624 240 7 40 chr3 86366758 86366910 -73232873 - B1_Mur2 SINE Alu -1 148 2 6 1243 237 300 13 60 chr3 86366910 86367109 -73232674 + polypyrimidine Low_complexity Low_complexity 1 189 0 6 1243 1582 57 0 0 chr3 86368295 86368488 -73231295 - B2_Mm1a SINE B2 0 193 1 6 1243 22 0 0 0 chr3 86368532 86368554 -73231229 + AT_rich Low_complexity Low_complexity 1 22 0 6 1243 408 297 20 0 chr3 86368831 86368932 -73230851 - PB1D7 SINE Alu -8 112 10 6 1243 248 370 10 29 chr3 86368842 86368945 -73230838 - ID_B1 SINE B4 -46 178 78 6 1243 192 217 0 0 chr3 86369699 86369745 -73230038 + T-rich Low_complexity Low_complexity 1 46 0 6 1243 766 189 42 7 chr3 86369745 86369889 -73229894 - B1_Mur3 SINE Alu 0 149 1 6 1243 306 326 42 10 chr3 86369942 86370038 -73229745 - MLT1D LTR MaLR -101 404 306 6 1243 180 0 0 0 chr3 86371209 86371229 -73228554 + (TG)n Simple_repeat Simple_repeat 2 21 0 6 1243 401 312 91 0 chr3 86371263 86371449 -73228334 - L1MC4 LINE L1 -1038 7004 6802 6 1243 21 36 0 0 chr3 86371763 86371791 -73227992 + AT_rich Low_complexity Low_complexity 1 28 0 6 1243 23 54 0 0 chr3 86371976 86372013 -73227770 + AT_rich Low_complexity Low_complexity 1 37 0 6 1243 1093 78 112 12 chr3 86372020 86372189 -73227594 + B2_Mm2 SINE B2 2 187 -8 6 1243 21 57 0 0 chr3 86372208 86372243 -73227540 + AT_rich Low_complexity Low_complexity 1 35 0 6 1243 602 311 36 10 chr3 86372411 86372606 -73227177 - B3 SINE B2 -9 207 8 6 1243 1075 80 0 0 chr3 86373129 86373267 -73226516 + B1_Mus1 SINE Alu 2 139 -9 6 1243 300 133 0 0 chr3 86373284 86373344 -73226439 + (A)n Simple_repeat Simple_repeat 1 60 0 6 1243 315 0 0 0 chr3 86375174 86375209 -73224574 + (TG)n Simple_repeat Simple_repeat 1 35 0 6 1243 351 0 0 0 chr3 86375209 86375247 -73224536 + (GA)n Simple_repeat Simple_repeat 1 39 0 6 1243 26 30 0 0 chr3 86376069 86376102 -73223681 + AT_rich Low_complexity Low_complexity 1 33 0 6 1244 21 57 0 0 chr3 86377940 86377975 -73221808 + AT_rich Low_complexity Low_complexity 1 35 0 6 1244 209 348 11 21 chr3 86380176 86380270 -73219513 + L2a LINE L2 3333 3425 -1 6 1244 911 244 19 51 chr3 86380303 86380519 -73219264 + B4 SINE B4 84 292 0 6 1244 187 194 0 0 chr3 86380558 86380594 -73219189 - MIR SINE MIR -44 218 183 6 1244 22 70 0 0 chr3 86380858 86380901 -73218882 + AT_rich Low_complexity Low_complexity 1 43 0 6 1244 23 0 0 0 chr3 86381153 86381176 -73218607 + AT_rich Low_complexity Low_complexity 1 23 0 6 1244 512 178 8 17 chr3 86381309 86381429 -73218354 - Lx7 LINE L1 -8 7688 7570 6 1244 2719 217 38 2 chr3 86381504 86382109 -73217674 - Lx7 LINE L1 -349 7347 6721 6 1244 222 37 0 0 chr3 86382194 86382221 -73217562 + (TA)n Simple_repeat Simple_repeat 1 27 0 6 1244 548 261 166 6 chr3 86382830 86383011 -73216772 - B3 SINE B2 -5 211 2 7 1244 1119 76 7 0 chr3 86383372 86383516 -73216267 - B1_Mus2 SINE Alu -1 146 2 7 1244 27 62 0 0 chr3 86383717 86383765 -73216018 + AT_rich Low_complexity Low_complexity 1 48 0 7 1244 330 312 43 0 chr3 86383777 86383915 -73215868 + B1F2 SINE Alu 1 144 -5 7 1244 282 95 0 0 chr3 86384427 86384469 -73215314 + (TGGGGG)n Simple_repeat Simple_repeat 3 44 0 7 1244 28 29 0 0 chr3 86384648 86384683 -73215100 + AT_rich Low_complexity Low_complexity 1 35 0 7 1244 333 283 98 0 chr3 86385533 86385625 -73214158 + PB1D10 SINE Alu 3 103 -14 7 1244 674 177 113 60 chr3 86385930 86386098 -73213685 - B2_Mm2 SINE B2 -18 177 1 7 1244 375 23 0 0 chr3 86386990 86387034 -73212749 + (TC)n Simple_repeat Simple_repeat 2 45 0 7 1244 180 273 18 35 chr3 86388312 86388369 -73211414 - L2a LINE L2 0 3426 3371 7 1244 310 106 0 0 chr3 86389027 86389074 -73210709 + Lx3B LINE L1 6925 6971 -2 7 1244 524 261 75 23 chr3 86389599 86389732 -73210051 + B1_Mur1 SINE Alu 2 141 -8 7 1244 234 375 88 7 chr3 86390219 86390356 -73209427 - LTR33B LTR ERVL -329 174 27 7 1244 1096 66 0 0 chr3 86390662 86390799 -73208984 + L1Md_F2 LINE L1 5450 5586 -297 7 1244 7981 50 2 4 chr3 86390799 86391793 -73207990 + L1Md_F2 LINE L1 5587 6578 -4 7 1244 228 67 0 0 chr3 86393703 86393733 -73206050 + (TA)n Simple_repeat Simple_repeat 2 31 0 7 1244 210 388 0 0 chr3 86394752 86394832 -73204951 - AluG_3 SINE Alu -91 220 141 7 1244 430 322 68 19 chr3 86395008 86395271 -73204512 - L1MEc LINE L1 -2449 3870 3595 7 1244 21 71 0 0 chr3 86395363 86395405 -73204378 + AT_rich Low_complexity Low_complexity 1 42 0 7 1244 7018 113 7 9 chr3 86395451 86396538 -73203245 - L1_Mus3 LINE L1 -25 6613 5504 7 1244 2540 109 41 102 chr3 86396546 86397056 -73202727 - RLTR44C LTR ERVK -23 479 1 7 1244 5923 95 16 6 chr3 86397056 86397827 -73201956 - L1_Mus3 LINE L1 -374 5509 4735 7 1244 207 0 0 0 chr3 86397827 86397850 -73201933 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 7 1244 5923 95 16 6 chr3 86397850 86397949 -73201834 - L1_Mus3 LINE L1 -1149 4734 4631 7 1244 5483 110 17 29 chr3 86397928 86399540 -73200243 - L1VL2 LINE L1 -1826 1789 192 7 1244 622 272 132 29 chr3 86400120 86400461 -73199322 - L1MEc LINE L1 -5468 932 557 7 1244 527 0 16 0 chr3 86400808 86400871 -73198912 + (TG)n Simple_repeat Simple_repeat 2 65 0 7 1244 639 292 7 0 chr3 86400883 86401027 -73198756 - RSINE1 SINE B4 -17 148 4 7 1244 315 352 12 60 chr3 86401029 86401195 -73198588 - L1MEc LINE L1 -6214 186 29 7 1244 485 254 65 7 chr3 86401293 86401432 -73198351 + MTD LTR MaLR 1 147 -272 7 1244 455 244 177 32 chr3 86401452 86401638 -73198145 + MTD LTR MaLR 207 419 0 7 1244 34 65 0 0 chr3 86401675 86401737 -73198046 + AT_rich Low_complexity Low_complexity 1 62 0 7 1244 227 289 31 102 chr3 86403106 86403233 -73196550 + PB1D9 SINE Alu 1 118 -2 7 1244 265 316 13 0 chr3 86403236 86403312 -73196471 + ID4 SINE ID 5 81 -2 7 1244 192 77 0 0 chr3 86403412 86403438 -73196345 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 7 1244 25 0 0 0 chr3 86404588 86404613 -73195170 + AT_rich Low_complexity Low_complexity 1 25 0 7 1244 238 310 90 0 chr3 86407578 86407678 -73192105 - PB1D10 SINE Alu -8 109 1 7 1244 236 258 98 91 chr3 86407700 86407832 -73191951 + MIRc SINE MIR 4 136 -132 7 1244 21 36 0 0 chr3 86407945 86407973 -73191810 + AT_rich Low_complexity Low_complexity 1 28 0 7 1244 216 0 0 0 chr3 86408719 86408743 -73191040 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 7 1244 23 0 0 0 chr3 86411115 86411138 -73188645 + AT_rich Low_complexity Low_complexity 1 23 0 7 1244 30 27 0 0 chr3 86411739 86411776 -73188007 + AT_rich Low_complexity Low_complexity 1 37 0 7 1244 1063 74 0 0 chr3 86412053 86412188 -73187595 + B1_Mus1 SINE Alu 2 136 -12 7 1244 225 65 0 0 chr3 86412639 86412670 -73187113 + (CA)n Simple_repeat Simple_repeat 2 32 0 7 1244 480 335 72 25 chr3 86412739 86413140 -73186643 + L1ME3A LINE L1 5439 5858 -315 7 1244 264 268 40 68 chr3 86413560 86413736 -73186047 + L1M3 LINE L1 3090 3260 -2880 7 1244 389 332 101 19 chr3 86413917 86414126 -73185657 - MLT1G1 LTR MaLR -244 335 110 7 1244 269 302 0 0 chr3 86414280 86414343 -73185440 + ID4_ SINE ID 9 71 -12 7 1244 506 233 0 22 chr3 86415215 86415399 -73184384 + (TA)n Simple_repeat Simple_repeat 1 180 0 7 1244 211 274 0 0 chr3 86415415 86415466 -73184317 + GA-rich Low_complexity Low_complexity 2 52 0 7 1244 285 358 178 5 chr3 86415630 86415838 -73183945 - HERVL40-int LTR ERVL -3231 2299 2056 7 1244 1550 223 55 25 chr3 86416100 86416333 -73183450 - ORR1D1 LTR MaLR 0 374 136 7 1244 1533 74 18 5 chr3 86416333 86416550 -73183233 - L1_Mus2 LINE L1 -1 6565 6346 7 1244 1550 223 55 25 chr3 86416550 86416679 -73183104 - ORR1D1 LTR MaLR -239 135 1 7 1244 314 248 90 8 chr3 86416988 86417110 -73182673 + L1ME1 LINE L1 3043 3174 -2972 7 1244 234 284 146 19 chr3 86417113 86417271 -73182512 + L1ME1 LINE L1 3678 3855 -2291 7 1244 366 350 90 32 chr3 86417536 86417970 -73181813 + L1ME1 LINE L1 5496 5954 -230 7 1244 210 37 0 0 chr3 86418100 86418127 -73181656 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 7 1244 22 35 0 0 chr3 86418832 86418861 -73180922 + AT_rich Low_complexity Low_complexity 1 29 0 7 1244 536 188 94 0 chr3 86420748 86420865 -73178918 + B1_Mus1 SINE Alu 1 128 -20 7 1244 462 234 174 7 chr3 86421918 86422056 -73177727 + B3A SINE B2 1 161 -37 7 1244 324 209 29 15 chr3 86422831 86422899 -73176884 + tRNA-Ala-GCY_ tRNA tRNA 3 71 -4 7 1244 1179 36 0 0 chr3 86422992 86423130 -73176653 + B1_Mus2 SINE Alu 2 139 -8 7 1244 221 0 35 0 chr3 86423140 86423169 -73176614 + (CAAAA)n Simple_repeat Simple_repeat 1 30 0 7 1244 233 325 45 60 chr3 86423205 86423339 -73176444 + MIRb SINE MIR 81 212 -56 7 1244 31 82 0 0 chr3 86423648 86423721 -73176062 + AT_rich Low_complexity Low_complexity 1 73 0 7 1244 298 302 47 0 chr3 86423960 86424046 -73175737 - B1F1 SINE Alu -36 113 24 7 1244 643 308 96 42 chr3 86425467 86425728 -73174055 + B4A SINE B4 2 276 -16 7 1244 246 220 0 0 chr3 86425756 86425806 -73173977 + (CA)n Simple_repeat Simple_repeat 1 50 0 7 1244 438 57 14 0 chr3 86426017 86426087 -73173696 + Lx4A LINE L1 6985 7055 -3 7 1244 1028 108 0 0 chr3 86427265 86427413 -73172370 + B1_Mus1 SINE Alu 1 148 0 7 1244 415 304 29 23 chr3 86427838 86428010 -73171773 - MIR SINE MIR -14 248 76 7 1244 286 91 0 35 chr3 86430563 86430620 -73169163 + (TTTG)n Simple_repeat Simple_repeat 2 56 0 7 1244 470 187 11 21 chr3 86430622 86430715 -73169068 - B1_Mus2 SINE Alu -4 143 52 7 1244 1074 95 0 0 chr3 86431216 86431395 -73168388 + (TG)n Simple_repeat Simple_repeat 2 180 0 7 1244 410 264 54 62 chr3 86431664 86431793 -73167990 + RSINE1 SINE B4 34 161 -4 7 1244 475 282 115 47 chr3 86431842 86432206 -73167577 - L1M4 LINE L1 -1262 4884 4496 7 1244 434 278 93 112 chr3 86432377 86432689 -73167094 + MLT1B LTR MaLR 85 390 0 7 1244 310 310 88 24 chr3 86432776 86432981 -73166802 - L1M4 LINE L1 -3790 2356 2139 7 1244 267 246 16 0 chr3 86433005 86433066 -73166717 + (TG)n Simple_repeat Simple_repeat 1 62 0 7 1244 876 278 79 61 chr3 86433066 86433346 -73166437 - B4A SINE B4 0 292 8 7 1244 22 0 0 0 chr3 86433944 86433966 -73165817 + AT_rich Low_complexity Low_complexity 1 22 0 7 1244 22 0 0 0 chr3 86434320 86434342 -73165441 + AT_rich Low_complexity Low_complexity 1 22 0 7 1244 730 273 61 50 chr3 86434927 86435224 -73164559 + ORR1E LTR MaLR 56 355 -4 7 1244 280 333 31 0 chr3 86435226 86435355 -73164428 - L1MC4 LINE L1 -1112 6930 6798 7 1244 926 74 0 0 chr3 86435392 86435514 -73164269 + B1_Mus2 SINE Alu 17 138 -9 7 1244 234 0 0 0 chr3 86435514 86435540 -73164243 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 7 1244 230 216 136 10 chr3 86436742 86436845 -73162938 - Lx8 LINE L1 -5 7468 7353 7 1244 334 247 12 12 chr3 86436889 86436975 -73162808 - Lx8 LINE L1 -207 7266 7181 7 1244 445 319 110 69 chr3 86437085 86437331 -73162452 - B4 SINE B4 -20 272 17 7 1244 34 24 0 0 chr3 86437612 86437653 -73162130 + AT_rich Low_complexity Low_complexity 1 41 0 7 1244 462 36 0 0 chr3 86438612 86438668 -73161115 + (CATA)n Simple_repeat Simple_repeat 3 58 0 7 1244 690 255 7 34 chr3 86438736 86438882 -73160901 - B1_Mur1 SINE Alu -6 143 2 7 1244 283 280 0 123 chr3 86438773 86438895 -73160888 - MT2B LTR ERVL -341 260 154 7 1244 342 253 6 66 chr3 86440631 86440813 -73158970 + GA-rich Low_complexity Low_complexity 4 174 0 7 1244 393 206 6 66 chr3 86440820 86441061 -73158722 + GA-rich Low_complexity Low_complexity 1 226 0 7 1244 275 289 0 28 chr3 86440975 86441153 -73158630 + G-rich Low_complexity Low_complexity 2 174 0 7 1244 356 193 0 93 chr3 86441130 86441370 -73158413 + GA-rich Low_complexity Low_complexity 1 217 0 7 1244 1505 62 5 0 chr3 86442052 86442244 -73157539 + B2_Mm1t SINE B2 1 193 0 7 1244 1171 42 14 0 chr3 86442327 86442471 -73157312 + B1_Mus1 SINE Alu 1 146 -2 7 1244 213 211 0 0 chr3 86444641 86444698 -73155085 + (ATG)n Simple_repeat Simple_repeat 2 58 0 7 1244 1059 290 7 15 chr3 86444714 86444987 -73154796 - B4A SINE B4 -20 272 2 7 1244 24 32 0 0 chr3 86446504 86446535 -73153248 + AT_rich Low_complexity Low_complexity 1 31 0 7 1244 445 327 31 25 chr3 86447573 86447733 -73152050 + RSINE1 SINE B4 3 163 -2 7 1244 3244 226 120 13 chr3 86448415 86449335 -73150448 - Lx7 LINE L1 -2 7694 6677 7 1244 258 95 0 0 chr3 86449472 86449514 -73150269 + (CATA)n Simple_repeat Simple_repeat 2 43 0 7 1244 1589 196 12 35 chr3 86449589 86449634 -73150149 - L1_Mur3 LINE L1 -4506 1374 1330 7 1244 2422 168 22 5 chr3 86449634 86450048 -73149735 + MTC LTR MaLR 1 421 0 7 1244 1589 249 27 19 chr3 86450048 86450518 -73149265 - L1_Mur3 LINE L1 -6399 1329 855 7 1244 238 232 94 10 chr3 86450867 86450963 -73148820 - L1_Mur3 LINE L1 -6883 845 742 7 1244 225 212 0 48 chr3 86451259 86451343 -73148440 + A-rich Low_complexity Low_complexity 4 83 0 7 1244 406 220 51 25 chr3 86451597 86451719 -73148064 - PB1 SINE Alu -2 125 2 7 1244 25 0 0 0 chr3 86451781 86451806 -73147977 + AT_rich Low_complexity Low_complexity 1 25 0 7 1244 1051 21 52 59 chr3 86451829 86451982 -73147801 - L1Md_F3 LINE L1 0 6584 6433 7 1244 260 27 27 0 chr3 86452288 86452325 -73147458 + (TTTTG)n Simple_repeat Simple_repeat 2 39 0 8 1244 990 83 8 0 chr3 86452325 86452457 -73147326 - B1_Mus2 SINE Alu -10 137 5 8 1244 1108 99 52 3 chr3 86452815 86452988 -73146795 + B2_Mm2 SINE B2 9 187 -8 8 1244 1876 142 22 50 chr3 86452997 86453359 -73146424 + RLTR21 LTR ERVK 721 1072 -500 8 1244 1250 34 0 0 chr3 86453457 86453604 -73146179 + B1_Mus2 SINE Alu 1 147 0 8 1244 1002 198 77 54 chr3 86453992 86454334 -73145449 - RMER17C LTR ERVK 0 410 1 8 1244 397 312 74 9 chr3 86454334 86454526 -73145257 - MER33 DNA MER1_type -150 174 5 8 1244 441 0 0 0 chr3 86454810 86454859 -73144924 + (TTTTG)n Simple_repeat Simple_repeat 2 50 0 8 1244 348 292 107 31 chr3 86456243 86456402 -73143381 + L2a LINE L2 2336 2506 -913 8 1244 825 304 95 14 chr3 86456630 86456977 -73142806 + L2a LINE L2 3049 3423 -3 8 1244 679 280 0 0 chr3 86456981 86457131 -73142652 + RSINE1 SINE B4 2 151 -14 8 1244 691 190 112 28 chr3 86457444 86457623 -73142160 - Lx5 LINE L1 -3 7047 6854 8 1244 1575 111 0 34 chr3 86457602 86457835 -73141948 - Lx5 LINE L1 -445 6605 6381 8 1244 5380 181 64 10 chr3 86457834 86459408 -73140375 + Lx5 LINE L1 4647 6321 -729 8 1244 1059 75 0 0 chr3 86459408 86459567 -73140216 + (CA)n Simple_repeat Simple_repeat 1 159 0 8 1244 3657 160 56 17 chr3 86459567 86459612 -73140171 + Lx5 LINE L1 6322 6367 -683 8 1244 241 330 99 0 chr3 86459643 86459734 -73140049 - Cheshire DNA MER1_type -2145 275 176 8 1244 466 245 18 9 chr3 86459819 86459930 -73139853 - MER57C2 LTR ERV1 -25 409 298 8 1244 28 29 0 0 chr3 86459930 86459965 -73139818 + AT_rich Low_complexity Low_complexity 1 35 0 8 1244 284 205 11 137 chr3 86459973 86460148 -73139635 - Lx9 LINE L1 -15 7629 7477 8 1244 1025 294 131 33 chr3 86460196 86460685 -73139098 - Lx9 LINE L1 -131 7513 6977 8 1244 748 66 48 24 chr3 86460810 86460934 -73138849 + L1Md_F2 LINE L1 6456 6582 0 8 1244 1116 58 0 0 chr3 86460940 86461077 -73138706 + B1_Mus2 SINE Alu 2 138 -9 8 1244 22 0 0 0 chr3 86461713 86461735 -73138048 + AT_rich Low_complexity Low_complexity 1 22 0 8 1244 189 0 0 0 chr3 86461764 86461785 -73137998 + (TA)n Simple_repeat Simple_repeat 1 21 0 8 1244 208 341 66 0 chr3 86462598 86462689 -73137094 - MIRc SINE MIR -128 140 44 8 1244 576 294 65 47 chr3 86464604 86464836 -73134947 - B4A SINE B4 -55 237 2 8 1244 198 364 103 41 chr3 86464860 86465055 -73134728 - L2b LINE L2 -5 3370 3164 8 1244 499 227 23 70 chr3 86465336 86465464 -73134319 + B1F SINE Alu 22 143 -6 8 1244 206 32 32 0 chr3 86465919 86465950 -73133833 + (CAAAA)n Simple_repeat Simple_repeat 1 32 0 8 1244 1146 62 7 0 chr3 86466045 86466191 -73133592 + B1_Mus1 SINE Alu 2 148 0 8 1244 780 87 8 16 chr3 86466192 86466321 -73133462 + (GAA)n Simple_repeat Simple_repeat 2 129 0 8 1244 363 44 0 0 chr3 86466323 86466368 -73133415 + (GA)n Simple_repeat Simple_repeat 1 45 0 8 1244 467 252 67 40 chr3 86466618 86466767 -73133016 - RSINE1 SINE B4 -3 162 10 8 1244 290 348 62 48 chr3 86466775 86466920 -73132863 - B1F SINE Alu -2 147 1 8 1244 1340 29 109 0 chr3 86467906 86468080 -73131703 - B2_Mm1a SINE B2 0 193 1 8 1244 792 304 49 26 chr3 86469671 86470097 -73129686 - L1ME1 LINE L1 -2 6177 5742 8 1244 260 289 42 36 chr3 86470357 86470522 -73129261 - L1ME1 LINE L1 -820 5326 5161 8 1244 29 0 0 0 chr3 86470606 86470635 -73129148 + AT_rich Low_complexity Low_complexity 1 29 0 8 1244 699 182 0 105 chr3 86470637 86470790 -73128993 + B1_Mus1 SINE Alu 4 140 -8 8 1244 227 339 0 0 chr3 86470874 86470930 -73128853 + ID2 SINE ID 5 60 -23 8 1244 279 54 0 0 chr3 86471231 86471268 -73128515 + (GTTTG)n Simple_repeat Simple_repeat 1 37 0 8 1244 773 246 80 0 chr3 86471268 86471455 -73128328 - ID_B1 SINE B4 -13 211 10 8 1244 21 36 0 0 chr3 86473974 86474002 -73125781 + AT_rich Low_complexity Low_complexity 1 28 0 8 1244 319 344 25 43 chr3 86474149 86474310 -73125473 + RSINE1 SINE B4 3 160 -5 8 1244 270 275 0 17 chr3 86474500 86474572 -73125211 - PB1D10 SINE Alu -77 72 3 8 1244 243 243 0 67 chr3 86474513 86474588 -73125195 - B4A SINE B4 -147 145 76 8 1244 485 297 157 57 chr3 86474816 86475166 -73124617 - MLT1B LTR MaLR -3 387 3 8 1244 303 270 81 52 chr3 86475383 86475555 -73124228 - L1M4 LINE L1 -2578 3568 3392 8 1244 288 77 0 0 chr3 86475650 86475689 -73124094 + (T)n Simple_repeat Simple_repeat 1 39 0 8 1244 204 40 0 0 chr3 86475913 86475938 -73123845 + (GGGTG)n Simple_repeat Simple_repeat 3 27 0 8 1244 290 289 173 35 chr3 86476205 86476825 -73122958 - L1M4 LINE L1 -2921 3225 2521 8 1244 373 303 99 37 chr3 86476855 86477016 -73122767 - MLT1B LTR MaLR -3 387 217 8 1244 294 217 205 0 chr3 86477089 86477172 -73122611 - MLT1B LTR MaLR -366 139 40 8 1244 240 35 0 0 chr3 86477294 86477323 -73122460 + (CTTA)n Simple_repeat Simple_repeat 2 30 0 8 1244 663 182 124 0 chr3 86477323 86477444 -73122339 - B1_Mur1 SINE Alu -11 138 3 8 1244 239 286 84 92 chr3 86477472 86477543 -73122240 - L1M4 LINE L1 -3799 2347 2288 8 1244 1197 47 0 7 chr3 86477543 86477692 -73122091 - B1_Mus1 SINE Alu 0 148 1 8 1244 239 286 84 92 chr3 86477692 86477859 -73121924 - L1M4 LINE L1 -3859 2287 2111 8 1244 494 263 30 0 chr3 86477957 86478056 -73121727 - PB1 SINE Alu -5 122 21 8 1244 234 0 0 0 chr3 86478994 86479020 -73120763 + (A)n Simple_repeat Simple_repeat 1 26 0 8 1244 245 206 15 45 chr3 86479266 86479332 -73120451 - U13_ snRNA snRNA 0 108 45 8 1244 236 358 53 75 chr3 86479510 86479697 -73120086 - ORR1D2 LTR MaLR -187 183 1 8 1244 217 277 0 15 chr3 86479781 86479847 -73119936 + (TA)n Simple_repeat Simple_repeat 1 65 0 8 1244 237 341 35 0 chr3 86480134 86480219 -73119564 - MLT1B LTR MaLR -1 389 302 8 1244 729 220 90 45 chr3 86480268 86480468 -73119315 - MLT1B LTR MaLR -174 216 8 8 1244 912 150 0 0 chr3 86481062 86481202 -73118581 + B1_Mur3 SINE Alu 2 141 -8 8 1244 543 78 0 0 chr3 86481213 86481290 -73118493 + (TAG)n Simple_repeat Simple_repeat 1 77 0 8 1244 322 247 21 82 chr3 86481559 86481656 -73118127 + PB1 SINE Alu 1 91 -36 8 1244 471 285 111 40 chr3 86482265 86482482 -73117301 - MIR SINE MIR -17 251 7 8 1244 31 44 0 0 chr3 86482634 86482679 -73117104 + AT_rich Low_complexity Low_complexity 1 45 0 8 1244 339 323 145 25 chr3 86482937 86483096 -73116687 - MLT2B2 LTR ERVL -27 527 350 8 1244 1146 249 104 30 chr3 86483106 86483434 -73116349 - ORR1E LTR MaLR -4 355 4 8 1244 1144 273 65 46 chr3 86483434 86483802 -73115981 - MLT2B2 LTR ERVL -139 376 2 8 1244 304 331 125 6 chr3 86483898 86484018 -73115765 + B1F2 SINE Alu 1 127 -20 8 1244 332 346 57 42 chr3 86485325 86485518 -73114265 - L2b LINE L2 -5 3370 3175 8 1244 285 288 87 35 chr3 86485636 86485751 -73114032 + B3 SINE B2 45 165 -51 8 1244 261 0 0 0 chr3 86485756 86485785 -73113998 + (CA)n Simple_repeat Simple_repeat 2 30 0 8 1244 1143 48 0 20 chr3 86485816 86485966 -73113817 + B1_Mus1 SINE Alu 2 148 0 8 1244 180 111 0 0 chr3 86486151 86486178 -73113605 + (TTCA)n Simple_repeat Simple_repeat 3 29 0 8 1244 1057 220 16 10 chr3 86486181 86486374 -73113409 - B3 SINE B2 -20 196 3 8 1244 243 0 0 0 chr3 86486378 86486405 -73113378 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 8 1244 570 189 17 43 chr3 86486408 86486524 -73113259 - PB1D9 SINE Alu -7 113 1 8 1244 296 324 95 0 chr3 86486800 86486905 -73112878 + PB1 SINE Alu 3 117 -10 8 1244 1231 210 138 27 chr3 86486948 86487281 -73112502 + ORR1D2 LTR MaLR 1 370 0 8 1244 5972 64 23 5 chr3 86487322 86488108 -73111675 - L1Md_F2 LINE L1 0 6582 5783 8 1244 2101 56 0 4 chr3 86488108 86488368 -73111415 - L1_Mm LINE L1 -362 5521 5262 8 1244 894 59 0 40 chr3 86488361 86488485 -73111298 + L1_Mm LINE L1 4703 4821 -1062 8 1244 386 259 104 31 chr3 86489465 86489628 -73110155 + MER3 DNA MER1_type 35 209 0 8 1244 737 247 188 4 chr3 86489771 86490027 -73109756 + MLT-int LTR MaLR 1433 1735 0 8 1244 375 300 134 82 chr3 86490065 86490356 -73109427 + MLT1A LTR MaLR 60 365 -9 8 1244 298 275 0 0 chr3 86490729 86490798 -73108985 - ID4_ SINE ID -10 73 5 8 1244 1126 161 80 0 chr3 86490985 86491184 -73108599 - B3 SINE B2 0 216 2 8 1244 243 380 0 0 chr3 86492081 86492173 -73107610 + CT-rich Low_complexity Low_complexity 3 94 0 8 1244 902 256 123 18 chr3 86493426 86493730 -73106053 + ORR1D2 LTR MaLR 1 364 -6 8 1244 430 288 139 12 chr3 86493942 86494107 -73105676 + B3 SINE B2 1 186 -30 8 1244 302 96 58 0 chr3 86494156 86494208 -73105575 + B3 SINE B2 156 210 -6 8 1244 379 284 0 21 chr3 86494789 86494886 -73104897 - ID_B1 SINE B4 -50 174 80 8 1244 1507 129 4 18 chr3 86495096 86495324 -73104459 - URR1B DNA MER1_type 0 225 1 8 1244 24 32 0 0 chr3 86495383 86495414 -73104369 + AT_rich Low_complexity Low_complexity 1 31 0 8 1244 4662 117 21 55 chr3 86496036 86496834 -73102949 - Lx3C LINE L1 -7 6969 6199 8 1244 259 104 0 0 chr3 86496835 86496883 -73102900 - BGLII_B LTR ERVK -393 48 1 8 1244 739 221 34 28 chr3 86496936 86497113 -73102670 - RMER30 DNA MER1_type -20 182 5 8 1244 336 282 296 10 chr3 86497139 86497348 -73102435 + ORR1E LTR MaLR 50 338 -21 8 1244 1703 181 55 14 chr3 86497656 86498020 -73101763 - RLTR30 LTR ERV1 0 379 1 8 1244 270 244 0 0 chr3 86499824 86499906 -73099877 + (TA)n Simple_repeat Simple_repeat 2 83 0 8 1244 84 11 0 0 chr3 86499909 86500000 -73099783 + AT_rich Low_complexity Low_complexity 1 91 0 8 1244 33 56 0 0 chr3 86500000 86500054 -73099729 + AT_rich Low_complexity Low_complexity 1 54 0 1 1244 269 277 215 98 chr3 86500089 86500336 -73099447 - L1MC2 LINE L1 -82 6262 5977 2 1244 261 0 0 0 chr3 86500336 86500365 -73099418 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 3 1244 1047 87 0 0 chr3 86500365 86500503 -73099280 - B1_Mus1 SINE Alu -9 139 2 4 1244 269 277 215 98 chr3 86500503 86500734 -73099049 - L1MC2 LINE L1 -368 5976 5728 2 1244 250 254 42 0 chr3 86500938 86501009 -73098774 - L1MC2 LINE L1 -685 5648 5575 2 1244 2191 66 7 3 chr3 86501544 86501832 -73097951 + L1_Mus1 LINE L1 6279 6567 0 5 1244 569 295 210 8 chr3 86502008 86502370 -73097413 + Kanga1 DNA Tc2 1280 1714 -31 6 1244 230 305 46 78 chr3 86502547 86502700 -73097083 - B3A SINE B2 -15 183 36 7 1244 21 0 0 0 chr3 86502927 86502948 -73096835 + AT_rich Low_complexity Low_complexity 1 21 0 8 1244 918 110 0 0 chr3 86504475 86504639 -73095144 + (TC)n Simple_repeat Simple_repeat 1 164 0 9 1244 195 266 303 0 chr3 86506371 86506480 -73093303 - L2c LINE L2 -5 3382 3241 1 1244 1193 73 18 6 chr3 86506542 86506708 -73093075 + B2_Mm2 SINE B2 2 169 -26 1 1244 279 146 0 0 chr3 86506710 86506765 -73093018 + (GAAA)n Simple_repeat Simple_repeat 1 55 0 1 1244 462 312 57 31 chr3 86506973 86507182 -73092601 + MIRb SINE MIR 37 253 -9 1 1244 247 271 89 77 chr3 86507307 86507475 -73092308 - Charlie13a DNA Charlie -1289 225 56 1 1245 290 342 34 8 chr3 86507584 86507702 -73092081 - L2c LINE L2 -1 3386 3266 1 1245 303 127 0 0 chr3 86507978 86508041 -73091742 + (TG)n Simple_repeat Simple_repeat 2 64 0 1 1245 805 152 14 28 chr3 86508145 86508287 -73091496 + B1_Mur2 SINE Alu 2 141 -8 1 1245 218 171 0 47 chr3 86508372 86508415 -73091368 + polypurine Low_complexity Low_complexity 5 45 0 1 1245 180 0 0 0 chr3 86508756 86508776 -73091007 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 1 1245 27 49 0 0 chr3 86509493 86509534 -73090249 + AT_rich Low_complexity Low_complexity 1 41 0 2 1245 21 0 0 0 chr3 86509567 86509588 -73090195 + AT_rich Low_complexity Low_complexity 1 21 0 2 1245 267 310 29 29 chr3 86509668 86509771 -73090012 + PB1D9 SINE Alu 18 120 0 2 1245 292 221 117 0 chr3 86510342 86510419 -73089364 - B3A SINE B2 -112 86 1 2 1245 194 266 30 30 chr3 86510510 86510576 -73089207 + L2b LINE L2 3310 3375 0 2 1245 198 0 0 0 chr3 86510717 86510739 -73089044 + (TG)n Simple_repeat Simple_repeat 1 22 0 2 1245 581 242 11 96 chr3 86511294 86511472 -73088311 - RSINE1 SINE B4 0 165 3 2 1245 494 367 105 0 chr3 86511719 86511948 -73087835 + L4 LINE RTE 1250 1502 -527 2 1245 387 0 0 0 chr3 86513966 86514009 -73085774 + (TG)n Simple_repeat Simple_repeat 2 44 0 2 1245 1169 41 7 0 chr3 86514158 86514303 -73085480 + B1_Mus1 SINE Alu 2 147 -1 2 1245 24 67 0 0 chr3 86515002 86515047 -73084736 + AT_rich Low_complexity Low_complexity 1 45 0 3 1245 274 329 40 0 chr3 86518654 86518671 -73081112 - ID SINE ID -135 89 12 3 1245 297 224 17 0 chr3 86518671 86518729 -73081054 - tRNA-Ala-GCA tRNA tRNA -11 64 6 3 1245 297 350 10 0 chr3 86518746 86518846 -73080937 + CT-rich Low_complexity Low_complexity 2 102 0 3 1245 936 275 16 62 chr3 86518847 86518877 -73080906 - B4A SINE B4 -7 285 266 3 1245 393 22 0 0 chr3 86518877 86518923 -73080860 + (TG)n Simple_repeat Simple_repeat 1 46 0 3 1245 936 275 16 62 chr3 86518923 86519136 -73080647 - B4A SINE B4 -27 265 53 3 1245 346 317 28 19 chr3 86519189 86519295 -73080488 - PB1D10 SINE Alu -1 116 10 3 1245 317 296 111 0 chr3 86520846 86520927 -73078856 + RSINE1 SINE B4 68 157 -8 3 1245 938 149 58 42 chr3 86520939 86521128 -73078655 - B2_Mm2 SINE B2 -2 193 2 3 1245 324 0 0 0 chr3 86521654 86521690 -73078093 + (TTTA)n Simple_repeat Simple_repeat 1 36 0 3 1245 247 196 0 0 chr3 86522128 86522179 -73077604 - L1MB3 LINE L1 -31 6152 6102 4 1245 358 325 66 5 chr3 86522261 86522459 -73077324 - L1MB3 LINE L1 -87 6096 5887 4 1245 226 217 0 0 chr3 86522450 86522496 -73077287 - L1M4 LINE L1 -359 5815 5770 4 1245 433 234 109 13 chr3 86522634 86522790 -73076993 - L1MB8 LINE L1 -1 6177 6007 4 1245 288 0 0 0 chr3 86523148 86523180 -73076603 + (TG)n Simple_repeat Simple_repeat 2 33 0 4 1245 189 0 0 0 chr3 86523772 86523793 -73075990 + (C)n Simple_repeat Simple_repeat 1 21 0 4 1245 401 253 11 0 chr3 86524929 86525016 -73074767 + RSINE1 SINE B4 3 90 -75 4 1245 233 273 15 0 chr3 86525059 86525125 -73074658 + tRNA-Ala-GCA tRNA tRNA 2 68 -7 4 1245 22 56 0 0 chr3 86525932 86525968 -73073815 + AT_rich Low_complexity Low_complexity 1 36 0 4 1245 270 0 0 0 chr3 86526874 86526904 -73072879 + (TG)n Simple_repeat Simple_repeat 2 31 0 4 1245 252 0 0 0 chr3 86528142 86528170 -73071613 + (A)n Simple_repeat Simple_repeat 1 28 0 5 1245 195 147 88 0 chr3 86528965 86528999 -73070784 - MIRb SINE MIR -15 253 217 5 1245 911 163 0 20 chr3 86530200 86530350 -73069433 - B1_Mur3 SINE Alu 0 149 3 5 1245 238 211 137 27 chr3 86530876 86530949 -73068834 - ID4 SINE ID 0 83 3 5 1245 16941 57 7 6 chr3 86531235 86533420 -73066363 + L1Md_F2 LINE L1 3401 5586 -297 5 1245 7717 47 28 12 chr3 86533420 86534401 -73065382 + L1Md_F2 LINE L1 5587 6582 0 5 1245 208 0 30 30 chr3 86534404 86534437 -73065346 + (CAAAA)n Simple_repeat Simple_repeat 2 34 0 5 1245 290 331 103 19 chr3 86535202 86535411 -73064372 - MIR SINE MIR -2 266 40 5 1245 398 241 79 55 chr3 86536375 86536547 -73063236 + B3A SINE B2 1 179 -14 5 1245 333 326 104 21 chr3 86538430 86538574 -73061209 - MIRb SINE MIR -34 234 79 5 1245 414 0 0 0 chr3 86538593 86538639 -73061144 + (TC)n Simple_repeat Simple_repeat 2 47 0 5 1245 351 0 0 0 chr3 86538642 86538681 -73061102 + (CA)n Simple_repeat Simple_repeat 2 40 0 6 1245 271 227 45 0 chr3 86538730 86538796 -73060987 - RMER30 DNA MER1_type -115 87 19 6 1245 323 336 103 0 chr3 86538964 86539080 -73060703 + MIR SINE MIR 31 158 -104 6 1245 508 232 30 0 chr3 86539548 86539647 -73060136 + PB1D10 SINE Alu 1 102 -15 6 1245 514 14 14 28 chr3 86539693 86539765 -73060018 + (TAGA)n Simple_repeat Simple_repeat 4 74 0 6 1245 378 0 0 0 chr3 86540546 86540588 -73059195 + (TTTG)n Simple_repeat Simple_repeat 2 43 0 6 1245 198 0 0 0 chr3 86542186 86542208 -73057575 + (CCTG)n Simple_repeat Simple_repeat 1 22 0 6 1245 621 0 0 0 chr3 86542209 86542278 -73057505 + (TTTC)n Simple_repeat Simple_repeat 1 69 0 6 1245 349 230 0 0 chr3 86545045 86545119 -73054664 + ID4 SINE ID 2 75 -8 6 1245 226 333 93 0 chr3 86545768 86545843 -73053940 - ID4_ SINE ID -1 82 1 6 1245 1000 185 25 36 chr3 86546269 86546465 -73053318 - B3 SINE B2 -8 208 15 7 1245 263 267 40 0 chr3 86548144 86548219 -73051564 - MADE2 DNA Mariner -1 79 2 7 1245 21 0 0 0 chr3 86549109 86549130 -73050653 + AT_rich Low_complexity Low_complexity 1 21 0 7 1245 667 325 42 0 chr3 86551159 86551350 -73048433 - MER58A DNA MER1_type -5 219 21 7 1245 779 213 106 27 chr3 86551417 86551605 -73048178 - ID_B1 SINE B4 -21 203 1 7 1245 800 191 0 0 chr3 86551691 86551827 -73047956 + B1_Mus2 SINE Alu 2 137 -10 7 1245 1153 50 0 0 chr3 86551854 86551994 -73047789 + B1_Mus1 SINE Alu 1 140 -8 7 1245 302 299 156 72 chr3 86552033 86552296 -73047487 - Charlie2b DNA MER1_type -189 2593 2309 7 1245 468 313 22 0 chr3 86552416 86552550 -73047233 - B1F1 SINE Alu -8 141 5 7 1245 395 281 144 87 chr3 86552793 86553070 -73046713 - Charlie2b DNA MER1_type -711 2071 1779 7 1245 812 264 121 18 chr3 86553075 86553356 -73046427 - Charlie2b DNA MER1_type -2461 321 12 7 1245 261 286 0 14 chr3 86553474 86553545 -73046238 + (TGGA)n Simple_repeat Simple_repeat 1 70 0 7 1245 404 240 67 0 chr3 86553602 86553706 -73046077 + PB1D7 SINE Alu 2 112 -8 8 1245 260 279 0 25 chr3 86554586 86554667 -73045116 + GA-rich Low_complexity Low_complexity 3 81 0 8 1245 23 54 0 0 chr3 86555860 86555897 -73043886 + AT_rich Low_complexity Low_complexity 1 37 0 8 1245 321 292 102 67 chr3 86557085 86557335 -73042448 - L1ME1 LINE L1 -1619 6166 5906 8 1245 263 323 222 10 chr3 86557485 86557679 -73042104 - MIRc SINE MIR -32 236 2 8 1245 226 299 126 58 chr3 86558825 86558928 -73040855 + L2c LINE L2 3256 3387 -39 8 1245 23 0 0 0 chr3 86559922 86559945 -73039838 + AT_rich Low_complexity Low_complexity 1 23 0 8 1245 28 29 0 0 chr3 86559957 86559992 -73039791 + AT_rich Low_complexity Low_complexity 1 35 0 8 1245 607 84 12 0 chr3 86560030 86560113 -73039670 + B1_Mur3 SINE Alu 66 149 0 8 1245 210 71 0 0 chr3 86560126 86560154 -73039629 + (A)n Simple_repeat Simple_repeat 1 28 0 8 1245 483 145 0 0 chr3 86560148 86560231 -73039552 + (GGGA)n Simple_repeat Simple_repeat 3 85 0 9 1245 428 51 17 0 chr3 86563378 86563437 -73036346 + (TC)n Simple_repeat Simple_repeat 2 61 0 9 1245 190 163 77 58 chr3 86563839 86563891 -73035892 - L4 LINE RTE -654 1375 1323 9 1245 23 33 0 0 chr3 86564165 86564195 -73035588 + AT_rich Low_complexity Low_complexity 1 30 0 9 1245 223 234 277 0 chr3 86567319 86567413 -73032370 - PB1D7 SINE Alu 0 120 1 9 1245 779 182 208 11 chr3 86567584 86567762 -73032021 - B3 SINE B2 0 216 4 9 1245 768 181 22 7 chr3 86567917 86568056 -73031727 - B1_Mur2 SINE Alu 0 149 9 9 1245 448 158 116 0 chr3 86568182 86568277 -73031506 + PB1D9 SINE Alu 2 107 -13 9 1245 2244 207 58 14 chr3 86568281 86568766 -73031017 + Lx9 LINE L1 7006 7511 -133 9 1245 222 150 0 0 chr3 86568800 86568840 -73030943 + (TA)n Simple_repeat Simple_repeat 2 41 0 9 1245 360 178 83 95 chr3 86568840 86569008 -73030775 + Lx9 LINE L1 7477 7642 -2 1 1245 757 199 7 34 chr3 86569016 86569162 -73030621 + B1_Mur3 SINE Alu 2 143 -6 1 1245 203 61 30 0 chr3 86569165 86569198 -73030585 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 1 1245 1234 28 7 0 chr3 86570065 86570210 -73029573 + B1_Mm SINE Alu 2 147 0 1 1245 180 375 0 111 chr3 86570475 86570558 -73029225 - MIR SINE MIR -156 106 36 1 1245 288 273 13 0 chr3 86570558 86570635 -73029148 - ID4_ SINE ID -4 79 2 1 1245 180 375 0 111 chr3 86570635 86570668 -73029115 - MIR SINE MIR -227 35 3 1 1245 350 188 29 0 chr3 86570861 86570930 -73028853 - ID4_ SINE ID -11 72 2 1 1245 183 361 60 30 chr3 86573787 86573921 -73025862 + L2a LINE L2 3249 3386 -40 1 1245 989 62 0 0 chr3 86574663 86574791 -73024992 - B1_Mus1 SINE Alu -20 128 1 1 1245 840 65 0 0 chr3 86574966 86575074 -73024709 - B1_Mus2 SINE Alu -1 146 39 1 1245 293 212 71 59 chr3 86575008 86575093 -73024690 - RLTR25B LTR ERVK -519 509 424 1 1245 523 308 19 37 chr3 86577493 86577655 -73022128 - RSINE1 SINE B4 -5 160 2 1 1245 270 232 122 150 chr3 86578127 86578274 -73021509 - Tigger6a DNA MER2_type -1 1082 940 1 1245 593 223 54 61 chr3 86578274 86578422 -73021361 + B1_Mus1 SINE Alu 1 147 -1 1 1245 1566 247 193 7 chr3 86578446 86579136 -73020647 - Tigger6a DNA MER2_type -251 832 15 1 1245 423 0 0 0 chr3 86579279 86579326 -73020457 + (TG)n Simple_repeat Simple_repeat 1 47 0 1 1245 930 162 7 0 chr3 86580741 86580889 -73018894 + B1_Mur3 SINE Alu 1 149 0 1 1245 375 255 255 0 chr3 86583239 86583400 -73016383 + ID_B1 SINE B4 4 205 -19 1 1245 228 294 32 11 chr3 86584573 86584666 -73015117 - L1M4 LINE L1 -3561 2585 2491 1 1245 672 258 71 82 chr3 86588147 86588484 -73011299 + MER33 DNA MER1_type 6 319 -5 1 1245 206 367 12 12 chr3 86588556 86588636 -73011147 - L3 LINE CR1 -1060 3429 3350 1 1245 455 232 205 6 chr3 86589368 86589524 -73010259 + B3A SINE B2 1 187 -11 1 1245 254 279 0 0 chr3 86596188 86596249 -73003534 + ID2 SINE ID 12 72 -11 1 1245 307 217 43 14 chr3 86596880 86596950 -73002833 - MIR3 SINE MIR -28 180 109 1 1245 390 274 12 6 chr3 86598241 86598410 -73001373 + (TA)n Simple_repeat Simple_repeat 2 171 0 1 1245 259 311 60 83 chr3 86600193 86600410 -72999373 + YREP_Mm Unknown Unknown 83 294 -1518 1 1245 731 247 48 18 chr3 86600288 86600453 -72999330 - ID_B1 SINE B4 0 224 55 1 1245 455 307 14 21 chr3 86601498 86601641 -72998142 + MLT1A0 LTR MaLR 20 161 -204 1 1245 255 214 68 41 chr3 86601638 86601711 -72998072 + ID4_ SINE ID 7 81 -2 1 1245 651 271 71 38 chr3 86601727 86601938 -72997845 + MLT1A0 LTR MaLR 146 363 -2 1 1245 215 194 0 0 chr3 86602702 86602738 -72997045 + polypurine Low_complexity Low_complexity 2 37 0 1 1245 191 36 0 35 chr3 86602742 86602771 -72997012 + (CAAAAA)n Simple_repeat Simple_repeat 2 29 0 1 1245 316 169 34 0 chr3 86606453 86606512 -72993271 - B1F SINE Alu 0 149 89 1 1245 281 186 14 0 chr3 86607556 86607626 -72992157 + G-rich Low_complexity Low_complexity 2 72 0 1 1245 589 143 27 54 chr3 86607640 86607825 -72991958 + G-rich Low_complexity Low_complexity 1 180 0 1 1245 332 304 73 102 chr3 86608908 86609252 -72990531 + ORR1E LTR MaLR 26 359 0 1 1245 1464 65 38 0 chr3 86610457 86610641 -72989142 + B2_Mm2 SINE B2 2 192 -3 1 1245 626 143 22 33 chr3 86611258 86611439 -72988344 + (TG)n Simple_repeat Simple_repeat 2 180 0 1 1245 1077 152 142 0 chr3 86612875 86613072 -72986711 + URR1B DNA MER1_type 1 225 0 1 1245 667 146 15 0 chr3 86613425 86613555 -72986228 + (CA)n Simple_repeat Simple_repeat 2 133 0 1 1245 717 82 0 0 chr3 86614344 86614454 -72985329 + (TG)n Simple_repeat Simple_repeat 1 110 0 1 1245 341 302 49 80 chr3 86614455 86614724 -72985059 - B4A SINE B4 -18 274 1 1 1245 27 0 0 0 chr3 86615346 86615373 -72984410 + AT_rich Low_complexity Low_complexity 1 27 0 1 1245 391 279 56 49 chr3 86615725 86615887 -72983896 + RSINE1 SINE B4 3 165 0 1 1245 365 283 75 46 chr3 86616491 86616732 -72983051 - Charlie5 DNA MER1_type -5 2619 2372 1 1245 253 299 153 47 chr3 86617045 86617280 -72982503 + LTR40c LTR ERVL 126 385 -80 1 1245 1157 44 0 0 chr3 86619501 86619637 -72980146 + B1_Mus1 SINE Alu 2 137 -11 1 1245 489 119 8 48 chr3 86619653 86619777 -72980006 + GA-rich Low_complexity Low_complexity 3 121 0 1 1245 225 0 0 0 chr3 86620835 86620860 -72978923 + (A)n Simple_repeat Simple_repeat 1 25 0 1 1245 335 291 0 68 chr3 86621490 86621608 -72978175 - PB1D10 SINE Alu -6 111 2 1 1245 441 0 0 0 chr3 86625007 86625056 -72974727 + (GA)n Simple_repeat Simple_repeat 1 49 0 1 1245 245 284 121 48 chr3 86625199 86625406 -72974377 + MLT1F LTR MaLR 67 288 -260 1 1245 374 303 84 26 chr3 86625716 86625943 -72973840 + MLT1F LTR MaLR 278 517 -31 1 1245 360 240 30 23 chr3 86626491 86626613 -72973170 - MIR SINE MIR -149 119 5 1 1245 487 233 143 54 chr3 86627304 86627472 -72972311 - ID_B1 SINE B4 -10 214 32 1 1245 441 311 8 8 chr3 86627472 86627592 -72972191 - B1F2 SINE Alu -28 121 2 1 1245 644 205 6 0 chr3 86630955 86631111 -72968672 + (TG)n Simple_repeat Simple_repeat 2 158 0 1 1245 334 244 23 23 chr3 86631112 86631200 -72968583 + (CATG)n Simple_repeat Simple_repeat 1 88 0 1 1245 587 241 137 38 chr3 86631210 86631421 -72968362 - B4A SINE B4 -60 232 1 1 1245 484 288 175 12 chr3 86631437 86631683 -72968100 + L1MC1 LINE L1 6025 6310 -23 1 1245 3364 28 5 8 chr3 86631746 86632143 -72967640 + MTA_Mm LTR MaLR 1 396 0 1 1245 288 0 0 0 chr3 86632814 86632846 -72966937 + (TG)n Simple_repeat Simple_repeat 2 33 0 1 1245 379 321 122 24 chr3 86632902 86633148 -72966635 - B4A SINE B4 -22 270 1 1 1245 207 0 0 0 chr3 86633827 86633850 -72965933 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 1245 687 278 71 26 chr3 86635847 86636113 -72963670 - B4A SINE B4 -13 279 2 1 1245 213 306 108 60 chr3 86636635 86636802 -72962981 + MIRb SINE MIR 26 200 -68 1 1245 516 271 24 18 chr3 86636803 86636972 -72962811 + LTR82B Low_complexity ERVL 5 174 -656 1 1245 684 177 6 130 chr3 86637191 86637360 -72962423 + URR1B DNA MER1_type 1 148 -77 1 1245 709 197 23 0 chr3 86637408 86637540 -72962243 - B1_Mur1 SINE Alu -9 140 6 1 1245 1120 252 120 7 chr3 86638157 86638589 -72961194 + RMER5 LTR ERV1 47 527 -7 1 1246 1006 59 0 0 chr3 86639052 86639188 -72960595 - B1_Mus1 SINE Alu -5 143 8 1 1246 589 291 12 24 chr3 86639244 86639413 -72960370 - B3A SINE B2 -30 168 2 1 1246 328 76 45 0 chr3 86639563 86639587 -72960196 + (CAAAAA)n Simple_repeat Simple_repeat 4 28 0 1 1246 1116 36 73 0 chr3 86639587 86639724 -72960059 + B1_Mm SINE Alu 1 147 0 1 1246 328 76 45 0 chr3 86639724 86639765 -72960018 + (CAAAAA)n Simple_repeat Simple_repeat 5 47 0 1 1246 21 0 0 0 chr3 86639953 86639974 -72959809 + AT_rich Low_complexity Low_complexity 1 21 0 1 1246 332 185 31 0 chr3 86640066 86640131 -72959652 - PB1 SINE Alu -14 113 47 1 1246 643 219 78 11 chr3 86641514 86641833 -72957950 - MTD LTR MaLR 0 419 2 1 1246 358 289 119 90 chr3 86641834 86642032 -72957751 - L1MB8 LINE L1 -37 6141 5936 1 1246 1288 179 14 5 chr3 86642032 86642245 -72957538 - B3 SINE B2 0 216 2 1 1246 358 289 119 90 chr3 86642245 86642358 -72957425 - L1MB8 LINE L1 -243 5935 5821 1 1246 219 239 0 0 chr3 86642474 86642520 -72957263 + (TG)n Simple_repeat Simple_repeat 2 47 0 1 1246 303 262 0 0 chr3 86642550 86642657 -72957126 + (TG)n Simple_repeat Simple_repeat 2 108 0 1 1246 277 358 70 45 chr3 86642707 86642950 -72956833 - L2 LINE L2 -817 2602 2354 1 1246 211 118 0 0 chr3 86643090 86643124 -72956659 - L2 LINE L2 -1286 2133 2100 1 1246 227 191 0 0 chr3 86643187 86643234 -72956549 + B3A SINE B2 8 54 -144 1 1246 312 48 0 0 chr3 86644337 86644379 -72955404 + (TTTA)n Simple_repeat Simple_repeat 3 44 0 1 1246 1224 63 0 0 chr3 86644379 86644538 -72955245 - B2_Mm1a SINE B2 -33 160 2 1 1246 342 305 55 59 chr3 86644775 86644975 -72954808 + B4A SINE B4 1 199 -93 1 1246 758 195 139 28 chr3 86644975 86645182 -72954601 + ORR1B1 LTR MaLR 1 201 -193 1 1246 3590 58 20 2 chr3 86645182 86645669 -72954114 - LTRIS2 LTR ERV1 0 564 69 1 1246 1150 170 0 14 chr3 86645656 86645877 -72953906 + ORR1B1 LTR MaLR 177 394 0 1 1246 444 37 0 0 chr3 86645892 86645946 -72953837 + (GA)n Simple_repeat Simple_repeat 2 55 0 1 1246 306 98 0 0 chr3 86646121 86646172 -72953611 + (G)n Simple_repeat Simple_repeat 1 51 0 1 1246 1745 150 63 182 chr3 86646782 86646918 -72952865 - RLTR41 LTR ERV1 0 446 302 1 1246 1467 39 39 0 chr3 86646918 86647098 -72952685 - B2_Mm1a SINE B2 -6 187 1 1 1246 1745 150 63 182 chr3 86647098 86647467 -72952316 - RLTR41 LTR ERV1 -145 301 1 1 1246 387 0 0 0 chr3 86648763 86648806 -72950977 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 1246 22 0 0 0 chr3 86648864 86648886 -72950897 + AT_rich Low_complexity Low_complexity 1 22 0 1 1246 216 0 0 0 chr3 86649349 86649373 -72950410 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 1 1246 181 0 69 0 chr3 86650999 86651028 -72948755 + (TTTTTG)n Simple_repeat Simple_repeat 3 33 0 1 1246 317 283 105 58 chr3 86651030 86651221 -72948562 + Lx8 LINE L1 7248 7447 -26 1 1246 571 167 0 61 chr3 86651261 86651376 -72948407 + B1_Mur3 SINE Alu 42 149 0 1 1246 318 211 0 14 chr3 86651437 86651509 -72948274 - B1_Mm SINE Alu 0 147 77 1 1246 1285 180 105 120 chr3 86651569 86651960 -72947823 + RLTR41 LTR ERV1 62 446 0 1 1246 1122 88 0 13 chr3 86652088 86652237 -72947546 + B1_Mus1 SINE Alu 2 148 0 1 1246 288 0 0 0 chr3 86652237 86652269 -72947514 + (A)n Simple_repeat Simple_repeat 1 32 0 1 1246 228 266 97 44 chr3 86652317 86652431 -72947352 + RSINE1 SINE B4 46 165 0 1 1246 189 0 0 0 chr3 86653054 86653075 -72946708 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 1 1246 198 0 0 0 chr3 86654248 86654270 -72945513 + (T)n Simple_repeat Simple_repeat 1 22 0 2 1246 726 119 8 0 chr3 86655134 86655252 -72944531 - URR1A DNA MER1_type -40 186 68 2 1246 198 0 0 0 chr3 86656541 86656563 -72943220 + (TGGA)n Simple_repeat Simple_repeat 3 24 0 2 1246 1205 61 0 0 chr3 86656577 86656724 -72943059 - B1_Mus2 SINE Alu 0 147 1 2 1246 310 183 44 118 chr3 86657655 86657791 -72941992 - MTEa LTR MaLR -22 357 232 2 1246 2485 288 74 35 chr3 86657973 86658900 -72940883 - MTE-int LTR MaLR -34 1546 583 2 1246 309 269 50 75 chr3 86659361 86659562 -72940221 + RMER2 LTR ERV1 367 562 -5 2 1246 576 323 49 23 chr3 86660568 86660834 -72938949 + MER57D LTR ERV1 26 298 -113 2 1246 405 0 0 0 chr3 86660844 86660889 -72938894 + (TC)n Simple_repeat Simple_repeat 1 45 0 2 1246 351 0 0 0 chr3 86660889 86660927 -72938856 + (CA)n Simple_repeat Simple_repeat 1 39 0 2 1246 393 75 0 0 chr3 86663381 86663434 -72936349 + (CA)n Simple_repeat Simple_repeat 2 54 0 2 1246 756 176 21 35 chr3 86663440 86663581 -72936202 - B1_Mur2 SINE Alu -9 140 2 2 1246 186 71 0 0 chr3 86663804 86663832 -72935951 + (T)n Simple_repeat Simple_repeat 1 28 0 2 1246 210 253 12 128 chr3 86663876 86663962 -72935821 - MER5B DNA MER1_type -95 83 8 2 1246 297 0 0 0 chr3 86665607 86665640 -72934143 + (CA)n Simple_repeat Simple_repeat 2 34 0 2 1246 247 318 53 53 chr3 86665788 86665901 -72933882 - B1_Mm SINE Alu -33 114 2 2 1246 234 150 25 0 chr3 86665992 86666032 -72933751 - L1M4c LINE L1 -4661 1723 1683 2 1246 2021 238 83 48 chr3 86666836 86667668 -72932115 + RMER17B LTR ERVK 1 906 0 2 1246 544 192 108 0 chr3 86668258 86668378 -72931405 + RMER21B LTR ERV1 303 435 -407 2 1246 459 0 0 0 chr3 86669288 86669339 -72930444 + (GAAA)n Simple_repeat Simple_repeat 2 52 0 2 1246 244 250 229 17 chr3 86669340 86669458 -72930325 + RMER21B LTR ERV1 425 567 -275 2 1246 264 30 0 0 chr3 86670163 86670196 -72929587 + (TCTCTG)n Simple_repeat Simple_repeat 2 34 0 2 1246 871 161 0 14 chr3 86670199 86670338 -72929445 - B1_Mus1 SINE Alu -11 137 1 2 1246 1086 158 56 51 chr3 86670394 86670608 -72929175 - B3 SINE B2 0 216 2 2 1246 574 229 21 28 chr3 86671061 86671205 -72928578 + B3 SINE B2 63 205 -11 2 1246 2784 115 34 45 chr3 86671521 86671987 -72927796 + RMER6B LTR ERVK 1 461 0 2 1246 375 60 0 0 chr3 86673435 86673485 -72926298 + (TG)n Simple_repeat Simple_repeat 2 51 0 2 1246 294 268 88 16 chr3 86673534 86673659 -72926124 - B1_Mur2 SINE Alu -15 134 1 2 1246 1801 251 41 15 chr3 86675117 86675582 -72924201 + Lx7 LINE L1 6465 6941 -755 2 1246 249 261 55 33 chr3 86675587 86675678 -72924105 + Lx7 LINE L1 7260 7352 -344 2 1246 246 194 42 31 chr3 86675713 86675809 -72923974 + T-rich Low_complexity Low_complexity 3 99 0 2 1246 650 73 26 43 chr3 86675896 86676011 -72923772 + Lx LINE L1 6536 6648 -6 2 1246 224 306 199 37 chr3 86676148 86676389 -72923394 + B4 SINE B4 2 281 -11 2 1246 261 0 0 0 chr3 86676763 86676792 -72922991 + (CA)n Simple_repeat Simple_repeat 2 30 0 2 1246 450 0 0 0 chr3 86676792 86676841 -72922942 + (GA)n Simple_repeat Simple_repeat 2 51 0 2 1246 557 89 0 0 chr3 86676874 86676953 -72922830 - B1_Mus1 SINE Alu -69 79 1 2 1246 258 321 46 121 chr3 86677794 86678099 -72921684 - ORR1E LTR MaLR -55 304 23 2 1246 360 220 19 175 chr3 86678112 86678272 -72921511 + B4A SINE B4 148 282 -10 2 1246 1979 131 169 3 chr3 86678701 86679062 -72920721 - MTC LTR MaLR 0 421 1 2 1246 330 225 28 3 chr3 86679896 86679984 -72919799 - ID4_ SINE ID -50 102 14 2 1246 207 0 0 0 chr3 86681616 86681639 -72918144 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2 1246 1043 44 0 0 chr3 86681640 86681776 -72918007 - B1_Mus2 SINE Alu -3 144 9 2 1246 528 130 45 15 chr3 86682970 86683103 -72916680 + (CATA)n Simple_repeat Simple_repeat 2 138 0 2 1246 360 0 0 0 chr3 86683204 86683244 -72916539 + (GAAA)n Simple_repeat Simple_repeat 1 40 0 2 1246 951 9 0 0 chr3 86683244 86683351 -72916432 + (GGGGA)n Simple_repeat Simple_repeat 5 112 0 2 1246 1285 246 132 0 chr3 86686159 86686484 -72913299 + ORR1D2 LTR MaLR 1 368 -2 2 1246 333 260 0 0 chr3 86687019 86687092 -72912691 + ID4_ SINE ID 5 77 -6 2 1246 233 29 0 29 chr3 86687127 86687162 -72912621 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 2 1246 1369 210 43 27 chr3 86688659 86689028 -72910755 - MTD LTR MaLR -2 417 2 2 1246 22 56 0 0 chr3 86689186 86689222 -72910561 + AT_rich Low_complexity Low_complexity 1 36 0 2 1246 285 98 0 0 chr3 86689751 86689792 -72909991 + (T)n Simple_repeat Simple_repeat 1 41 0 2 1246 1184 68 0 13 chr3 86689796 86689946 -72909837 - B1_Mus1 SINE Alu 0 148 1 2 1246 213 39 0 0 chr3 86690355 86690381 -72909402 + (TG)n Simple_repeat Simple_repeat 1 26 0 2 1246 576 215 100 7 chr3 86691230 86691380 -72908403 + RSINE1 SINE B4 2 165 0 2 1246 493 261 204 0 chr3 86691809 86691966 -72907817 + ID_B1 SINE B4 8 196 -28 2 1246 349 297 169 6 chr3 86692133 86692316 -72907467 - MER82 DNA MER2_type -93 560 348 2 1246 401 315 111 0 chr3 86692317 86692479 -72907304 + B3A SINE B2 1 180 -18 2 1246 302 214 0 28 chr3 86692513 86692585 -72907198 - MER82 DNA MER2_type -289 364 295 2 1246 678 254 40 6 chr3 86693094 86693268 -72906515 + B3A SINE B2 1 180 -18 2 1246 821 132 40 27 chr3 86693532 86693680 -72906103 - B1_Mur4 SINE Alu 0 150 1 2 1246 26 74 0 0 chr3 86694540 86694594 -72905189 + AT_rich Low_complexity Low_complexity 1 54 0 2 1246 317 328 112 6 chr3 86695641 86695819 -72903964 - MER20 DNA MER1_type -7 212 16 2 1246 2560 66 97 19 chr3 86695848 86696219 -72903564 - MTB LTR MaLR 0 400 1 2 1246 400 278 28 0 chr3 86696802 86696910 -72902873 + PB1D10 SINE Alu 2 112 -5 2 1246 1677 31 0 0 chr3 86697008 86697200 -72902583 + B2_Mm1a SINE B2 2 193 0 2 1246 534 293 131 48 chr3 86697204 86697369 -72902414 + L1MC4a LINE L1 7100 7260 -782 2 1246 1302 99 5 25 chr3 86697369 86697565 -72902218 - B2_Mm2 SINE B2 -1 194 3 2 1246 534 285 137 46 chr3 86697565 86697917 -72901866 + L1MC4a LINE L1 7243 7644 -238 2 1246 876 148 20 0 chr3 86698072 86698221 -72901562 + B3 SINE B2 5 156 -60 2 1246 264 148 30 76 chr3 86698256 86698322 -72901461 + B3 SINE B2 143 205 -11 2 1246 26 0 0 0 chr3 86698322 86698348 -72901435 + AT_rich Low_complexity Low_complexity 1 26 0 2 1246 1800 163 53 8 chr3 86699190 86699548 -72900235 - ORR1D1 LTR MaLR 0 374 1 2 1246 509 303 40 36 chr3 86699787 86700064 -72899719 + B4A SINE B4 1 278 -14 2 1246 25 31 0 0 chr3 86700332 86700364 -72899419 + AT_rich Low_complexity Low_complexity 1 32 0 2 1246 234 169 49 33 chr3 86701498 86701559 -72898224 - ID2 SINE ID -17 66 5 2 1246 399 184 103 0 chr3 86703162 86703249 -72896534 + B3 SINE B2 2 97 -119 2 1246 23 0 0 0 chr3 86703259 86703282 -72896501 + AT_rich Low_complexity Low_complexity 1 23 0 2 1246 270 0 0 0 chr3 86703359 86703389 -72896394 + (A)n Simple_repeat Simple_repeat 1 30 0 2 1246 304 200 33 22 chr3 86703920 86704012 -72895771 + (CA)n Simple_repeat Simple_repeat 1 93 0 2 1246 609 230 36 29 chr3 86704036 86704175 -72895608 + B1_Mur3 SINE Alu 3 142 -7 2 1246 311 290 18 18 chr3 86704594 86704703 -72895080 + PB1D10 SINE Alu 3 111 -6 2 1246 1338 197 157 109 chr3 86705374 86705916 -72893867 - RMER19B LTR ERVK 0 611 1 2 1246 318 80 0 0 chr3 86705930 86705980 -72893803 + (A)n Simple_repeat Simple_repeat 1 50 0 2 1246 228 338 14 0 chr3 86706022 86706096 -72893687 - ID4_ SINE ID -7 76 2 2 1246 1714 275 104 33 chr3 86706363 86707067 -72892716 + Lx9 LINE L1 6531 7284 -360 2 1246 236 290 0 46 chr3 86707050 86707115 -72892668 + Lx8 LINE L1 7175 7236 -237 2 1246 453 179 23 23 chr3 86707547 86707806 -72891977 + (TG)n Simple_repeat Simple_repeat 1 259 0 2 1246 463 285 38 15 chr3 86707818 86707838 -72891945 - ID_B1 SINE B4 -14 210 80 2 1246 492 262 28 9 chr3 86707838 86707946 -72891837 - B1F1 SINE Alu -39 110 1 2 1246 884 93 43 0 chr3 86708023 86708163 -72891620 + B2_Mm2 SINE B2 1 146 -49 2 1246 579 181 0 0 chr3 86708177 86708293 -72891490 + GA-rich Low_complexity Low_complexity 1 116 0 2 1246 301 74 35 47 chr3 86708592 86708677 -72891106 + T-rich Low_complexity Low_complexity 1 84 0 2 1246 238 309 12 0 chr3 86708719 86708800 -72890983 - ID4_ SINE ID 0 83 2 2 1246 420 168 116 0 chr3 86709653 86709748 -72890035 + B1F2 SINE Alu 1 106 -43 2 1246 350 284 0 22 chr3 86710560 86710650 -72889133 + PB1D10 SINE Alu 1 88 -29 2 1246 222 346 48 9 chr3 86710566 86710671 -72889112 + ID_B1 SINE B4 87 195 -29 2 1246 542 245 35 28 chr3 86710675 86710818 -72888965 + B1F SINE Alu 3 146 -3 2 1246 2305 61 18 15 chr3 86711392 86711724 -72888059 + MusHAL1 LINE L1 2380 2712 0 2 1246 1197 55 0 0 chr3 86712469 86712615 -72887168 + B1_Mus2 SINE Alu 2 147 0 2 1246 234 174 0 0 chr3 86713014 86713060 -72886723 + (CA)n Simple_repeat Simple_repeat 1 46 0 2 1246 337 284 51 22 chr3 86713315 86713452 -72886331 - L1M3 LINE L1 -2003 4137 3997 2 1246 901 170 154 0 chr3 86715586 86715768 -72884015 - URR1A DNA MER1_type -15 211 2 2 1246 1066 95 7 0 chr3 86715931 86716078 -72883705 + B1_Mus1 SINE Alu 1 148 0 2 1246 520 237 22 9 chr3 86716106 86716285 -72883498 + L1MA6 LINE L1 6118 6303 0 2 1246 944 156 0 6 chr3 86716401 86716582 -72883201 + GA-rich Low_complexity Low_complexity 1 180 0 2 1246 255 178 0 82 chr3 86716632 86716681 -72883102 + PB1D9 SINE Alu 1 45 -103 3 1246 492 305 116 10 chr3 86717121 86717320 -72882463 + B4 SINE B4 8 227 -65 3 1246 234 246 35 0 chr3 86718014 86718071 -72881712 + 4.5SRNA scRNA scRNA 26 84 -10 3 1246 286 222 0 27 chr3 86718027 86718101 -72881682 + PB1D10 SINE Alu 43 114 -3 3 1246 273 308 28 19 chr3 86718148 86718254 -72881529 - PB1D7 SINE Alu -12 108 2 3 1246 209 220 40 0 chr3 86718290 86718340 -72881443 + GA-rich Low_complexity Low_complexity 4 55 0 3 1246 602 201 56 43 chr3 86718347 86718508 -72881275 - B3A SINE B2 -35 163 1 3 1246 1221 240 79 6 chr3 86718681 86718996 -72880787 - MTE2b LTR MaLR -39 340 3 3 1246 240 367 46 26 chr3 86719057 86719208 -72880575 - MLT1A LTR MaLR -123 251 98 3 1246 207 202 101 0 chr3 86719282 86719361 -72880422 + (CACGC)n Simple_repeat Simple_repeat 5 91 0 3 1246 402 276 38 61 chr3 86720199 86720330 -72879453 + RSINE1 SINE B4 38 165 0 3 1246 244 238 110 39 chr3 86720353 86720480 -72879303 + RCHARR1 DNA MER1_type 839 974 0 3 1246 670 297 25 55 chr3 86721156 86721430 -72878353 - B4A SINE B4 0 292 27 3 1246 269 299 28 118 chr3 86721451 86721595 -72878188 - MT2B LTR ERVL -296 305 175 3 1246 432 242 89 24 chr3 86721476 86721599 -72878184 - B1F2 SINE Alu -13 136 6 3 1246 589 149 9 28 chr3 86722109 86722221 -72877562 + B1_Mur2 SINE Alu 41 149 0 3 1246 195 140 68 23 chr3 86722480 86722524 -72877259 + MIR SINE MIR 105 150 -112 3 1246 492 273 43 12 chr3 86722998 86723161 -72876622 + MER5B DNA MER1_type 3 170 -8 3 1246 21 0 0 0 chr3 86724827 86724848 -72874935 + GC_rich Low_complexity Low_complexity 1 21 0 3 1246 271 259 0 47 chr3 86725206 86725291 -72874492 - L2a LINE L2 -5 3421 3341 3 1246 350 311 98 0 chr3 86725727 86725849 -72873934 + RSINE1 SINE B4 10 143 -22 3 1246 1310 14 0 0 chr3 86726408 86726555 -72873228 + B1_Mm SINE Alu 1 147 0 3 1246 1216 48 7 0 chr3 86728103 86728250 -72871533 + B1_Mus1 SINE Alu 1 148 0 3 1246 1611 27 0 21 chr3 86728792 86728981 -72870802 + B2_Mm1a SINE B2 1 185 -8 3 1246 287 316 102 31 chr3 86729694 86729919 -72869864 + ORR1E LTR MaLR 1 241 -118 3 1246 300 310 67 8 chr3 86730235 86730374 -72869409 + B1F SINE Alu 1 147 -2 3 1246 224 329 0 14 chr3 86730391 86730462 -72869321 + ID4_ SINE ID 12 81 -2 3 1246 570 251 178 5 chr3 86731122 86731294 -72868489 - B3 SINE B2 0 198 2 3 1246 275 298 14 0 chr3 86731623 86731720 -72868063 + ID4_ SINE ID 1 99 -53 3 1246 375 154 0 0 chr3 86731721 86731786 -72867997 + GA-rich Low_complexity Low_complexity 2 66 0 3 1246 1613 198 18 47 chr3 86731939 86732320 -72867463 - ORR1D2 LTR MaLR 0 370 1 3 1246 447 234 141 7 chr3 86732459 86732601 -72867182 + ID_B1 SINE B4 3 163 -61 3 1246 1031 308 54 24 chr3 86732677 86733173 -72866610 - L1MC4 LINE L1 -144 7898 7388 3 1246 2158 162 31 10 chr3 86733206 86733598 -72866185 - MTC LTR MaLR -20 401 2 3 1246 1109 50 65 0 chr3 86733598 86733737 -72866046 + B1_Mus1 SINE Alu 1 148 0 3 1246 636 310 25 45 chr3 86733874 86734246 -72865537 + ORR1E LTR MaLR 2 379 0 3 1246 242 235 0 0 chr3 86734261 86734312 -72865471 - L1MC4 LINE L1 -1023 7019 6969 3 1246 189 0 0 0 chr3 86734453 86734474 -72865309 + (C)n Simple_repeat Simple_repeat 1 21 0 3 1246 896 184 0 0 chr3 86734670 86734828 -72864955 + U1 snRNA snRNA 7 164 -1 3 1246 251 316 7 36 chr3 86735095 86735233 -72864550 + L1_Mm LINE L1 4212 4345 -1538 3 1246 630 289 15 66 chr3 86735397 86735482 -72864301 + L1M3 LINE L1 4617 4692 -1448 3 1246 1195 42 7 0 chr3 86735482 86735626 -72864157 - B1_Mus2 SINE Alu 0 147 3 3 1246 630 289 15 66 chr3 86735626 86735811 -72863972 + L1M3 LINE L1 4693 4873 -1267 3 1246 737 181 7 0 chr3 86735820 86735958 -72863825 + B1_Mm SINE Alu 9 147 0 3 1246 260 200 93 21 chr3 86736006 86736103 -72863680 + L1M3 LINE L1 4941 5044 -1099 3 1246 1960 248 97 53 chr3 86736092 86736547 -72863236 + L1_Rod LINE L1 5044 5543 -304 3 1246 1594 165 158 18 chr3 86736547 86736875 -72862908 + ORR1D1 LTR MaLR 1 374 0 3 1246 1960 248 97 53 chr3 86736875 86737189 -72862594 + L1_Rod LINE L1 5544 5847 0 3 1246 2095 115 47 19 chr3 86738146 86738464 -72861319 - ORR1A2 LTR MaLR 0 327 1 3 1246 192 77 0 0 chr3 86738538 86738564 -72861219 + (TTTC)n Simple_repeat Simple_repeat 3 28 0 3 1246 2708 28 6 6 chr3 86738857 86739179 -72860604 - RLTRETN_Mm LTR ERVK 0 322 1 3 1246 959 141 0 39 chr3 86739449 86739604 -72860179 + B1_Mur4 SINE Alu 1 149 -1 3 1246 21 0 0 0 chr3 86740107 86740128 -72859655 + AT_rich Low_complexity Low_complexity 1 21 0 3 1246 2638 190 82 53 chr3 86740198 86740881 -72858902 + Lx7 LINE L1 276 978 -6750 3 1246 382 144 11 108 chr3 86740892 86740985 -72858798 + Lx7 LINE L1 1066 1149 -6579 3 1246 1964 119 22 0 chr3 86741075 86741387 -72858396 - ORR1A2 LTR MaLR -8 319 1 3 1246 10141 112 32 11 chr3 86741387 86742258 -72857525 + Lx7 LINE L1 1166 2056 -3824 3 1246 261 57 0 0 chr3 86742258 86742293 -72857490 + (CA)n Simple_repeat Simple_repeat 1 35 0 3 1246 11799 177 26 76 chr3 86742293 86743142 -72856641 + Lx7 LINE L1 2049 2862 -3021 3 1246 2801 152 87 33 chr3 86743142 86743719 -72856064 + RLTR18 LTR ERVK 1 608 -8 3 1246 11799 177 26 76 chr3 86743719 86746074 -72853709 + Lx7 LINE L1 2863 5122 -761 3 1246 2880 36 0 3 chr3 86746074 86746412 -72853371 + IAPLTR1a_Mm LTR ERVK 1 337 0 3 1246 25981 31 35 12 chr3 86746412 86749499 -72850284 + IAPEz-int LTR ERVK 8 3165 -3316 3 1246 10003 27 2 4 chr3 86749488 86750628 -72849155 + IAPEz-int LTR ERVK 5345 6481 0 3 1246 2861 39 0 3 chr3 86750628 86750966 -72848817 + IAPLTR1a_Mm LTR ERVK 1 337 0 3 1246 578 174 57 89 chr3 86750966 86751124 -72848659 + Lx7 LINE L1 5112 5264 -616 3 1246 4795 137 35 65 chr3 86751124 86752035 -72847748 + RMER19B LTR ERVK 1 884 -18 3 1246 3831 31 2 4 chr3 86752037 86752490 -72847293 + L1Md_F3 LINE L1 6133 6584 0 3 1246 403 316 94 15 chr3 86752727 86753055 -72846728 + L1M2 LINE L1 4692 5045 -1098 3 1246 467 317 17 35 chr3 86753243 86753416 -72846367 + B4A SINE B4 108 277 -15 3 1246 201 74 0 0 chr3 86753587 86753614 -72846169 + (A)n Simple_repeat Simple_repeat 1 27 0 3 1246 3116 184 35 24 chr3 86753619 86754453 -72845330 + Lx7 LINE L1 5235 6083 -1613 3 1246 560 217 259 102 chr3 86754454 86754836 -72844947 - RMER10A LTR ERVL 0 442 1 3 1246 2981 199 59 3 chr3 86754842 86755416 -72844367 + Lx7 LINE L1 6089 6694 -1002 3 1246 2346 214 26 4 chr3 86755417 86755909 -72843874 + Lx7 LINE L1 6861 7363 -333 3 1246 406 204 167 98 chr3 86756101 86756275 -72843508 + B3A SINE B2 8 198 0 3 1246 789 138 312 6 chr3 86756314 86756474 -72843309 - B3 SINE B2 -7 209 1 3 1246 23 33 0 0 chr3 86756482 86756512 -72843271 + AT_rich Low_complexity Low_complexity 1 30 0 3 1246 348 221 0 10 chr3 86756595 86756687 -72843096 - ID4_ SINE ID -44 108 20 3 1246 238 218 39 0 chr3 86757046 86757124 -72842659 + (CATATA)n Simple_repeat Simple_repeat 5 85 0 3 1246 226 106 125 21 chr3 86757138 86757186 -72842597 - B3 SINE B2 -158 58 6 3 1246 1010 174 8 46 chr3 86757814 86758051 -72841732 + B3A SINE B2 2 195 0 3 1246 499 229 41 8 chr3 86758065 86758188 -72841595 + B1_Mur1 SINE Alu 3 129 -20 3 1246 925 96 59 0 chr3 86758208 86758343 -72841440 - B1_Mus1 SINE Alu -1 147 5 3 1246 2035 153 55 10 chr3 86758391 86758808 -72840975 + RMER10A LTR ERVL 1 436 -6 3 1246 1574 161 46 15 chr3 86759664 86759703 -72840080 - RMER5 LTR ERV1 0 534 492 3 1246 522 0 0 0 chr3 86759703 86759761 -72840022 + (GA)n Simple_repeat Simple_repeat 2 59 0 3 1246 1574 161 46 15 chr3 86759761 86760050 -72839733 - RMER5 LTR ERV1 -43 491 196 3 1246 200 100 0 24 chr3 86760054 86760095 -72839688 + (TTTTTG)n Simple_repeat Simple_repeat 2 41 0 3 1246 619 266 54 11 chr3 86760102 86760288 -72839495 - RMER5 LTR ERV1 -335 199 6 3 1246 223 28 0 53 chr3 86760356 86760394 -72839389 + (TTTTG)n Simple_repeat Simple_repeat 5 40 0 3 1246 476 265 70 5 chr3 86760636 86760822 -72838961 + L1MC4a LINE L1 6405 6602 -1280 3 1246 975 86 22 28 chr3 86760874 86761054 -72838729 + (GGAA)n Simple_repeat Simple_repeat 2 180 0 3 1246 244 274 20 18 chr3 86761056 86761138 -72838645 + L1MC4a LINE L1 6800 6917 -1125 3 1246 908 146 208 0 chr3 86761774 86761952 -72837831 - B3 SINE B2 0 216 2 3 1246 1044 70 7 0 chr3 86762150 86762292 -72837491 - B1_Mus1 SINE Alu 0 148 6 3 1246 476 278 58 21 chr3 86762356 86762547 -72837236 - MER63C DNA AcHobo -255 675 478 3 1246 311 287 18 11 chr3 86762547 86762685 -72837098 + PB1D7 SINE Alu 1 136 -11 3 1246 237 167 0 0 chr3 86762685 86762739 -72837044 + (TCTG)n Simple_repeat Simple_repeat 4 57 0 3 1246 327 239 0 0 chr3 86762740 86762828 -72836955 + (TA)n Simple_repeat Simple_repeat 1 88 0 3 1246 29 0 0 0 chr3 86763491 86763520 -72836263 + AT_rich Low_complexity Low_complexity 1 29 0 3 1246 216 158 0 0 chr3 86764185 86764223 -72835560 + (TA)n Simple_repeat Simple_repeat 2 39 0 3 1246 371 269 8 0 chr3 86764504 86764634 -72835149 + GA-rich Low_complexity Low_complexity 1 131 0 3 1246 2038 168 50 5 chr3 86764991 86765393 -72834390 + RMER4B LTR ERVK 16 435 -150 3 1246 275 168 110 12 chr3 86765379 86765479 -72834304 + RMER4B LTR ERVK 352 529 -56 3 1246 231 146 0 0 chr3 86765668 86765709 -72834074 + (T)n Simple_repeat Simple_repeat 1 41 0 3 1246 1098 49 21 7 chr3 86765709 86765853 -72833930 - B1_Mm SINE Alu 0 147 2 3 1246 219 69 0 0 chr3 86765866 86765895 -72833888 + (TTTA)n Simple_repeat Simple_repeat 3 31 0 3 1246 357 261 54 0 chr3 86766233 86766363 -72833420 + BC1_Mm scRNA scRNA 1 137 -15 3 1246 192 77 0 0 chr3 86766974 86767000 -72832783 + (TTTC)n Simple_repeat Simple_repeat 2 27 0 3 1246 1650 190 51 90 chr3 86767389 86767418 -72832365 + L1_Mur3 LINE L1 889 918 -6810 3 1246 189 0 0 0 chr3 86767418 86767439 -72832344 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 3 1246 1650 190 51 90 chr3 86767439 86767878 -72831905 + L1_Mur3 LINE L1 919 1339 -6389 3 1246 2738 179 125 12 chr3 86767858 86768267 -72831516 + L1_Mur3 LINE L1 1606 2096 -3751 3 1246 255 31 0 0 chr3 86768267 86768299 -72831484 + (CCA)n Simple_repeat Simple_repeat 1 32 0 3 1246 2738 157 115 7 chr3 86768299 86768552 -72831231 + L1_Mur3 LINE L1 2062 2335 -3545 3 155 13034 161 33 57 chr3 86768551 86770593 -72829190 - L1_Mur3 LINE L1 -1689 4191 2181 3 1247 3052 40 0 16 chr3 86770593 86770974 -72828809 - L1Md_F2 LINE L1 0 6582 6208 3 1247 13034 161 33 57 chr3 86770974 86771596 -72828187 - L1_Mur3 LINE L1 -3700 2180 1596 3 1247 484 217 0 143 chr3 86771596 86771608 -72828175 - PB1D9 SINE Alu 0 120 111 3 1247 201 39 0 0 chr3 86771608 86771634 -72828149 + (TTG)n Simple_repeat Simple_repeat 2 27 0 3 1247 484 217 0 143 chr3 86771634 86771761 -72828022 - PB1D9 SINE Alu -10 110 1 3 1247 13034 161 33 57 chr3 86771761 86771926 -72827857 - L1_Mur3 LINE L1 -4285 1595 1431 3 1247 872 94 14 21 chr3 86773662 86773830 -72825953 + B2_Mm2 SINE B2 1 163 -30 3 1247 36966 34 7 2 chr3 86773841 86778724 -72821059 + L1Md_F2 LINE L1 1427 6327 -255 3 1247 261 109 0 0 chr3 86778802 86778848 -72820935 + (GA)n Simple_repeat Simple_repeat 1 46 0 4 1247 347 293 61 85 chr3 86779610 86779774 -72820009 - RLTR33 LTR ERVK -80 598 439 4 1247 544 152 30 8 chr3 86779999 86780132 -72819651 + (TG)n Simple_repeat Simple_repeat 2 137 0 4 1247 4072 177 80 30 chr3 86781250 86781650 -72818133 - L1_Mur3 LINE L1 -3646 2234 1812 4 1247 1603 22 32 0 chr3 86781650 86781835 -72817948 + B2_Mm2 SINE B2 1 191 -4 4 1247 4072 181 79 33 chr3 86781835 86782477 -72817306 - L1_Mur3 LINE L1 -4069 1811 1148 4 1247 2265 145 10 51 chr3 86782477 86782870 -72816913 + ORR1C1 LTR MaLR 2 378 0 4 1247 2930 222 65 53 chr3 86782870 86782888 -72816895 - L1_Mur3 LINE L1 -6581 1147 1142 4 1247 1182 82 0 0 chr3 86782888 86783034 -72816749 - B1_Mus2 SINE Alu -1 146 1 4 1247 2930 222 65 53 chr3 86783034 86783697 -72816086 - L1_Mur3 LINE L1 -6587 1141 452 4 1247 578 233 105 0 chr3 86783718 86783851 -72815932 - B1_Mur1 SINE Alu -1 148 2 4 1247 27 62 0 0 chr3 86784615 86784663 -72815120 + AT_rich Low_complexity Low_complexity 1 48 0 4 1247 1531 247 68 93 chr3 86785026 86785647 -72814136 - RMER19C LTR ERVK -6 605 1 4 1247 243 0 0 0 chr3 86785714 86785741 -72814042 + (T)n Simple_repeat Simple_repeat 1 27 0 4 1247 898 209 70 15 chr3 86785799 86785998 -72813785 - B3 SINE B2 -6 210 1 4 1247 933 296 75 6 chr3 86786682 86787002 -72812781 + MER2 DNA MER2_type 3 344 -1 4 1247 1199 74 0 0 chr3 86788761 86788909 -72810874 - B1_Mus1 SINE Alu 0 148 1 4 1247 21 0 0 0 chr3 86788919 86788940 -72810843 + AT_rich Low_complexity Low_complexity 1 21 0 4 1247 6944 65 59 18 chr3 86788941 86790212 -72809571 - L1_Mus2 LINE L1 -1 6565 5239 4 1247 262 61 20 20 chr3 86790325 86790375 -72809408 + (TTTTG)n Simple_repeat Simple_repeat 2 51 0 4 1247 494 293 55 6 chr3 86793486 86793651 -72806132 - B3A SINE B2 -25 173 1 4 1247 8869 128 39 14 chr3 86794251 86795742 -72804041 + Lx2B LINE L1 5474 6996 -4 4 1247 315 240 0 0 chr3 86796216 86796291 -72803492 - RLTR24 LTR ERV1 -454 75 1 4 1247 231 103 0 0 chr3 86796458 86796497 -72803286 + (T)n Simple_repeat Simple_repeat 1 39 0 4 1247 277 330 0 0 chr3 86797039 86797215 -72802568 + (AGCTG)n Simple_repeat Simple_repeat 3 178 0 4 1247 317 307 0 0 chr3 86797144 86797320 -72802463 + (AACTG)n Simple_repeat Simple_repeat 3 178 0 4 1247 522 299 19 13 chr3 86797585 86797741 -72802042 + RSINE1 SINE B4 3 159 -6 4 1247 2123 124 9 6 chr3 86797759 86798107 -72801676 - RLTR15 LTR ERVK -10 349 1 4 1247 1665 150 373 71 chr3 86798107 86798268 -72801515 + MT2A LTR ERVL 8 214 -319 4 1247 1951 163 106 21 chr3 86798268 86798656 -72801127 - MTC LTR MaLR 0 421 1 4 1247 1665 185 57 21 chr3 86798656 86798960 -72800823 + MT2A LTR ERVL 215 533 0 4 1247 643 178 73 7 chr3 86798967 86799103 -72800680 + B1_Mus2 SINE Alu 3 147 0 4 1247 1231 41 0 0 chr3 86799108 86799255 -72800528 + B1_Mus2 SINE Alu 1 147 0 4 1247 261 0 0 0 chr3 86799255 86799284 -72800499 + (A)n Simple_repeat Simple_repeat 1 29 0 4 1247 801 94 107 0 chr3 86799453 86799602 -72800181 + ORR1A4 LTR MaLR 17 181 -148 4 1247 324 0 0 0 chr3 86799985 86800021 -72799762 + (CA)n Simple_repeat Simple_repeat 2 37 0 4 1247 195 333 62 0 chr3 86800820 86800901 -72798882 + MIRb SINE MIR 88 173 -95 4 1247 239 0 0 31 chr3 86803391 86803423 -72796360 + (CAAAA)n Simple_repeat Simple_repeat 3 33 0 4 1247 308 183 42 14 chr3 86805078 86805150 -72794633 + MTD LTR MaLR 338 411 -8 4 1247 662 222 75 35 chr3 86805155 86805356 -72794427 - Lx9 LINE L1 -1658 5986 5778 4 1247 1230 199 107 10 chr3 86805364 86805664 -72794119 + L1_Rod LINE L1 4073 4401 -1446 4 1247 6581 231 60 86 chr3 86805678 86806263 -72793520 - L1_Rod LINE L1 -2260 3587 3031 4 1247 847 223 96 0 chr3 86806263 86806451 -72793332 - B3 SINE B2 -10 206 1 4 1247 6581 231 60 86 chr3 86806451 86808200 -72791583 - L1_Rod LINE L1 -2817 3030 1315 4 1247 315 0 0 0 chr3 86808200 86808235 -72791548 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 4 1247 1174 30 0 0 chr3 86808236 86808371 -72791412 - B1_Mm SINE Alu -12 135 1 4 1247 6581 257 47 34 chr3 86808371 86808825 -72790958 - L1_Rod LINE L1 -6294 1314 845 4 1247 4587 182 61 37 chr3 86809349 86810183 -72789600 + Lx7 LINE L1 6696 7544 -152 4 1247 204 125 0 0 chr3 86810183 86810215 -72789568 + (CAT)n Simple_repeat Simple_repeat 2 33 0 4 1247 4587 182 61 37 chr3 86810215 86810357 -72789426 + Lx7 LINE L1 7545 7695 -1 4 1247 4151 199 45 19 chr3 86810843 86811200 -72788583 + Lx7 LINE L1 4265 4630 -1250 4 1247 513 0 0 0 chr3 86811200 86811257 -72788526 + (CA)n Simple_repeat Simple_repeat 2 58 0 4 1247 4151 199 45 19 chr3 86811257 86811634 -72788149 + Lx7 LINE L1 4631 5024 -856 4 1247 6726 121 48 42 chr3 86811634 86812742 -72787041 - RLTR13D3 LTR ERVK 0 1114 1 4 1247 4151 199 45 19 chr3 86812742 86812927 -72786856 + Lx7 LINE L1 5025 5208 -672 4 1247 372 271 209 62 chr3 86812950 86813304 -72786479 - RMER10A LTR ERVL -4 438 33 4 1247 2360 107 14 0 chr3 86813306 86813660 -72786123 + RLTR15 LTR ERVK 1 359 0 4 1247 1076 128 6 0 chr3 86813861 86814040 -72785743 + (GA)n Simple_repeat Simple_repeat 1 180 0 4 1247 2535 189 41 40 chr3 86814357 86815001 -72784782 + Lx7 LINE L1 5310 5968 -1728 4 1247 344 202 12 12 chr3 86815875 86815960 -72783823 + Lx7 LINE L1 5937 6021 -1675 4 1247 1982 108 3 71 chr3 86815966 86816248 -72783535 - ORR1A4 LTR MaLR -3 326 67 4 1247 5425 137 53 28 chr3 86816248 86817207 -72782576 + RLTR13C1 LTR ERVK 1 983 0 4 1247 1982 108 3 71 chr3 86817207 86817274 -72782509 - ORR1A4 LTR MaLR -263 66 1 4 1247 689 228 71 148 chr3 86817277 86817437 -72782346 + Lx7 LINE L1 6025 6171 -1525 4 1247 2440 52 0 26 chr3 86817437 86817750 -72782033 - L1_Mus1 LINE L1 0 6567 6263 4 1247 689 228 71 148 chr3 86817750 86817913 -72781870 + Lx7 LINE L1 6172 6323 -1373 4 1247 882 144 84 22 chr3 86817918 86818096 -72781687 - RMER4A LTR ERVK -277 189 1 4 1247 4339 154 16 8 chr3 86818096 86818840 -72780943 + L1_Mur3 LINE L1 4446 5195 -685 4 1247 916 244 68 4 chr3 86818849 86819084 -72780699 + Lx7 LINE L1 6240 6489 -1207 4 1247 2115 239 154 18 chr3 86819081 86819766 -72780017 + Lx7 LINE L1 6525 7310 -386 4 1247 2172 103 78 48 chr3 86819777 86820174 -72779609 - RLTR9E LTR ERVK 0 409 1 4 1247 315 277 0 40 chr3 86820184 86820249 -72779534 + T-rich Low_complexity Low_complexity 55 119 0 4 1247 189 94 0 0 chr3 86820249 86820281 -72779502 + (TG)n Simple_repeat Simple_repeat 1 32 0 4 1247 315 277 0 40 chr3 86820281 86820339 -72779444 + T-rich Low_complexity Low_complexity 1 54 0 4 1247 1718 186 131 26 chr3 86820855 86821236 -72778547 - MTC LTR MaLR 0 421 1 4 1247 220 311 93 28 chr3 86821935 86822117 -72777666 - MIR SINE MIR -2 260 67 4 1247 206 276 39 26 chr3 86822505 86822583 -72777200 + MIRc SINE MIR 76 154 -114 4 1247 3434 137 146 16 chr3 86822655 86823292 -72776491 - RMER6D LTR ERVK 0 720 1 4 1247 420 97 0 0 chr3 86823374 86823436 -72776347 + (CA)n Simple_repeat Simple_repeat 2 63 0 4 1247 489 17 0 0 chr3 86823437 86823495 -72776288 + (CCA)n Simple_repeat Simple_repeat 3 60 0 4 1247 11455 78 3 8 chr3 86824221 86826490 -72773293 + L1_Mus1 LINE L1 4310 6566 -1 4 1247 248 369 27 7 chr3 86827947 86828097 -72771686 + MIRb SINE MIR 112 264 -4 4 1247 321 26 0 0 chr3 86828115 86828153 -72771630 + (CTTA)n Simple_repeat Simple_repeat 1 38 0 4 1247 712 135 0 0 chr3 86828187 86828298 -72771485 - B2_Mm2 SINE B2 -84 111 1 4 1247 340 363 63 46 chr3 86828336 86828573 -72771210 + MER21B LTR ERV1 26 266 -597 4 1247 251 275 62 0 chr3 86828640 86828720 -72771063 - Lx7 LINE L1 0 7696 7612 4 1247 1659 211 24 78 chr3 86828728 86828872 -72770911 - Lx7 LINE L1 -1683 6013 5878 4 1247 1373 57 85 0 chr3 86828872 86829048 -72770735 + B2_Mm2 SINE B2 3 193 -2 4 1247 1659 211 24 78 chr3 86829048 86829354 -72770429 - Lx7 LINE L1 -1819 5877 5587 4 1247 1472 63 10 0 chr3 86829366 86829571 -72770212 - ORR1A2 LTR MaLR 0 327 121 4 1247 1323 225 52 24 chr3 86829727 86830110 -72769673 + L1_Rod LINE L1 922 1314 -6294 4 1247 951 68 98 0 chr3 86830110 86830235 -72769548 + B1_Mus2 SINE Alu 2 139 -8 4 1247 230 0 33 0 chr3 86830235 86830265 -72769518 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 4 1247 427 247 40 124 chr3 86830272 86830428 -72769355 + L1_Rod LINE L1 1315 1454 -4393 4 1247 2247 35 260 3 chr3 86830467 86830782 -72769001 - MTA_Mm LTR MaLR 0 396 1 4 1247 319 229 0 0 chr3 86830899 86830982 -72768801 + L1_Mur1 LINE L1 3703 3785 -2101 4 1247 956 296 102 56 chr3 86831349 86831847 -72767936 - Lx8 LINE L1 -147 7326 6806 4 1247 1020 279 122 41 chr3 86831897 86832306 -72767477 - L1_Mur3 LINE L1 -1609 4271 3814 4 1247 261 0 0 0 chr3 86832306 86832335 -72767448 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 4 1247 1219 28 0 0 chr3 86832339 86832481 -72767302 - B1_Mus2 SINE Alu -5 142 1 4 1247 1020 279 122 41 chr3 86832481 86832600 -72767183 - L1_Mur3 LINE L1 -2067 3813 3695 4 1247 22 0 0 0 chr3 86832600 86832622 -72767161 + AT_rich Low_complexity Low_complexity 1 22 0 4 1247 324 323 83 0 chr3 86832631 86832727 -72767056 - B3 SINE B2 -12 204 101 4 1247 585 220 51 23 chr3 86832764 86832941 -72766842 - L1_Rod LINE L1 -4406 1441 1260 4 1247 877 272 151 29 chr3 86833075 86833435 -72766348 - MTD LTR MaLR -14 405 1 4 1247 2575 123 34 3 chr3 86834063 86834445 -72765338 - ORR1B1 LTR MaLR 0 394 1 4 1247 333 0 0 0 chr3 86835308 86835345 -72764438 + (TC)n Simple_repeat Simple_repeat 1 37 0 4 1247 194 274 13 76 chr3 86835516 86835595 -72764188 - L2c LINE L2 -42 3345 3272 4 1247 405 319 43 5 chr3 86836093 86836279 -72763504 + L1_Rod LINE L1 5019 5211 -636 4 1247 634 172 96 24 chr3 86836436 86836561 -72763222 + B1_Mus2 SINE Alu 11 144 -3 4 1247 409 292 97 37 chr3 86836568 86836785 -72762998 + L1M1 LINE L1 5450 5679 -510 4 1247 604 292 83 10 chr3 86837175 86837379 -72762404 + B4A SINE B4 2 220 -72 4 1247 240 268 0 18 chr3 86837866 86837923 -72761860 + MIR SINE MIR 114 169 -93 4 1247 389 333 101 71 chr3 86837978 86838141 -72761642 - RMER13A LTR ERVK -135 773 584 4 1247 219 36 0 0 chr3 86838141 86838169 -72761614 + (GTGTG)n Simple_repeat Simple_repeat 3 30 0 4 1247 628 331 92 67 chr3 86838169 86838293 -72761490 - RMER13A LTR ERVK -325 583 448 4 1247 534 16 0 0 chr3 86838293 86838356 -72761427 + (TTCC)n Simple_repeat Simple_repeat 4 66 0 4 1247 7285 39 40 0 chr3 86838356 86839214 -72760569 - RLTR13B1 LTR ERVK -1 892 1 4 1247 628 330 86 63 chr3 86839214 86839616 -72760167 - RMER13A LTR ERVK -413 447 31 4 1247 297 0 0 0 chr3 86840305 86840338 -72759445 + (TG)n Simple_repeat Simple_repeat 2 34 0 4 1247 839 318 129 16 chr3 86840650 86841098 -72758685 + Charlie4a DNA MER1_type 10 508 0 5 1247 616 206 0 53 chr3 86841428 86841561 -72758222 + MT2A LTR ERVL 16 141 -392 5 1247 573 15 0 0 chr3 86841696 86841762 -72758021 + (CA)n Simple_repeat Simple_repeat 1 66 0 5 1247 186 43 0 0 chr3 86842244 86842267 -72757516 + (CACCC)n Simple_repeat Simple_repeat 2 24 0 5 1247 577 308 19 115 chr3 86842675 86842884 -72756899 + B3A SINE B2 3 191 -25 5 1247 1091 96 75 48 chr3 86843688 86843874 -72755909 - B2_Mm2 SINE B2 -4 191 1 5 1247 308 272 86 0 chr3 86844305 86844386 -72755397 - Lx5 LINE L1 -244 6806 6719 5 1247 3486 233 53 108 chr3 86844392 86845495 -72754288 - Lx5 LINE L1 -282 6768 5726 5 1247 890 254 35 39 chr3 86845486 86845740 -72754043 + Lx6 LINE L1 7208 7460 0 5 1247 416 277 56 73 chr3 86845759 86846117 -72753666 + L1M2 LINE L1 1634 1985 -4864 5 1247 484 275 6 36 chr3 86846117 86846283 -72753500 + L1_Mur2 LINE L1 508 668 -6418 5 1247 6941 96 2 1 chr3 86846276 86847551 -72752232 - L1_Mus3 LINE L1 -500 6138 4862 5 1247 4779 72 16 5 chr3 86847552 86848189 -72751594 + L1_Mus3 LINE L1 5994 6637 -1 5 1247 2144 141 65 3 chr3 86848228 86848583 -72751200 + ORR1C1 LTR MaLR 2 378 0 5 1247 503 297 74 92 chr3 86848607 86848944 -72750839 + L1M4c LINE L1 956 1286 -5098 5 1247 1249 234 106 46 chr3 86848960 86849063 -72750720 + ORR1D2 LTR MaLR 1 92 -278 5 1247 1285 49 5 21 chr3 86849063 86849250 -72750533 + L1_Mus4 LINE L1 6450 6633 -3 5 1247 1249 234 106 46 chr3 86849250 86849495 -72750288 + ORR1D2 LTR MaLR 93 370 0 5 1247 623 311 90 14 chr3 86849499 86849855 -72749928 + L1_Mur2 LINE L1 1543 1932 -3915 5 1247 563 204 39 0 chr3 86849908 86850011 -72749772 - B1_Mur2 SINE Alu -1 148 42 5 1247 506 279 30 42 chr3 86850204 86850369 -72749414 + RSINE1 SINE B4 2 164 -1 5 1247 339 197 33 25 chr3 86850371 86850616 -72749167 + (CA)n Simple_repeat Simple_repeat 1 247 0 5 1247 21 0 0 0 chr3 86850622 86850643 -72749140 + AT_rich Low_complexity Low_complexity 1 21 0 5 1247 3439 40 0 2 chr3 86850663 86851060 -72748723 - MTA_Mm LTR MaLR 0 396 1 5 1247 1003 281 159 24 chr3 86851060 86851737 -72748046 + L1_Mur2 LINE L1 2155 2923 -2957 5 1247 349 191 142 26 chr3 86851745 86851858 -72747925 + L1MD LINE L1 3092 3217 -2929 5 1247 1380 218 57 77 chr3 86851928 86852330 -72747453 + MT2A LTR ERVL 140 533 0 5 1247 847 335 128 4 chr3 86852330 86852816 -72746967 + Lx8 LINE L1 6715 7260 -213 5 1247 1088 247 126 33 chr3 86852931 86853320 -72746463 + L1_Mur3 LINE L1 2080 2504 -3376 5 1247 619 251 15 34 chr3 86853322 86853488 -72746295 + RMER20B LTR ERVK 1 161 -355 5 1247 254 268 103 48 chr3 86853593 86853738 -72746045 + RMER20B LTR ERVK 317 469 -47 5 1247 328 273 66 29 chr3 86853759 86853895 -72745888 + L1_Mur3 LINE L1 2499 2639 -3241 5 1247 1114 196 4 50 chr3 86853913 86854171 -72745612 + L1_Rod LINE L1 881 1126 -6482 5 1247 765 284 3 28 chr3 86854382 86854635 -72745148 + L1_Rod LINE L1 1186 1433 -4414 5 1247 2665 224 131 34 chr3 86854666 86855211 -72744572 + L1_Rod LINE L1 2001 2585 -3262 5 1247 231 61 0 0 chr3 86855211 86855244 -72744539 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 5 1247 2665 224 131 34 chr3 86855244 86855647 -72744136 + L1_Rod LINE L1 2586 3041 -2806 5 1247 272 269 19 0 chr3 86855654 86855758 -72744025 - L1_Mur3 LINE L1 -2748 3132 3027 5 1247 429 20 0 0 chr3 86855759 86855809 -72743974 + (CA)n Simple_repeat Simple_repeat 1 50 0 5 1247 650 276 160 14 chr3 86855828 86856116 -72743667 - Lx9 LINE L1 -213 7431 7102 5 1247 2792 246 76 19 chr3 86856084 86856984 -72742799 + L1_Mur3 LINE L1 4055 5005 -875 5 1247 522 336 47 19 chr3 86856997 86857255 -72742528 + Lx8 LINE L1 6993 7257 -216 5 1247 26 0 0 0 chr3 86857317 86857343 -72742440 + AT_rich Low_complexity Low_complexity 1 26 0 5 1247 315 0 0 0 chr3 86857722 86857757 -72742026 + (TG)n Simple_repeat Simple_repeat 1 35 0 5 1247 249 159 0 0 chr3 86859079 86859123 -72740660 + GA-rich Low_complexity Low_complexity 2 45 0 5 1247 1786 151 189 64 chr3 86859773 86860197 -72739586 + RMER1A Other Other 552 1028 -2 5 1247 437 50 17 0 chr3 86860218 86860278 -72739505 + (TAA)n Simple_repeat Simple_repeat 2 62 0 5 1247 464 326 112 0 chr3 86860282 86860497 -72739286 + L1_Rod LINE L1 2209 2447 -3400 5 1247 321 308 40 14 chr3 86860497 86860645 -72739138 + RSINE1 SINE B4 2 153 -12 5 1247 716 176 161 54 chr3 86860786 86860954 -72738829 - MTD LTR MaLR -21 398 213 5 1247 1620 0 0 0 chr3 86860957 86861137 -72738646 + (TCTCCC)n Simple_repeat Simple_repeat 1 180 0 5 1247 956 283 61 12 chr3 86861191 86861595 -72738188 - Lx7 LINE L1 -199 7274 6827 5 1247 180 0 0 0 chr3 86861600 86861620 -72738163 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 5 1247 705 279 120 0 chr3 86861629 86861862 -72737921 - L1_Mur3 LINE L1 -115 5765 5505 5 1247 935 224 24 5 chr3 86861893 86862099 -72737684 - MTD LTR MaLR -209 210 1 5 1247 1478 273 126 36 chr3 86862102 86863060 -72736723 + L1M2 LINE L1 2574 3590 -2553 5 1247 210 91 0 0 chr3 86863060 86863093 -72736690 + (TTAA)n Simple_repeat Simple_repeat 1 33 0 5 1247 1478 273 126 36 chr3 86863093 86863279 -72736504 + L1M2 LINE L1 3591 3821 -2322 5 1247 2164 100 3 60 chr3 86863282 86863613 -72736170 + ORR1A2 LTR MaLR 16 327 0 5 1247 499 305 129 30 chr3 86863617 86863881 -72735902 + L1M2 LINE L1 3817 4116 -2027 5 1247 323 280 127 0 chr3 86864376 86864526 -72735257 + L1M2 LINE L1 4759 4927 -953 5 1247 650 305 98 5 chr3 86864527 86864747 -72735036 - ORR1D2 LTR MaLR 0 370 130 5 1247 768 158 27 27 chr3 86864747 86864897 -72734886 + B1_Mur4 SINE Alu 1 150 0 5 1247 520 302 40 0 chr3 86864938 86865087 -72734696 - ORR1D2 LTR MaLR -204 155 1 5 1247 813 182 127 0 chr3 86865087 86865252 -72734531 - ORR1D2-int LTR MaLR 0 1370 1185 5 1247 2226 245 56 30 chr3 86865341 86865934 -72733849 + Lx9 LINE L1 6521 7128 -516 5 1247 1519 246 41 74 chr3 86866219 86866732 -72733051 + RMER5 LTR ERV1 4 499 -35 5 1247 1950 204 25 13 chr3 86866682 86867079 -72732704 - RMER5 LTR ERV1 -5 529 128 5 1247 978 133 0 0 chr3 86868212 86868355 -72731428 - B1_Mus2 SINE Alu 0 147 5 5 1247 1053 212 14 36 chr3 86868773 86868993 -72730790 + B3 SINE B2 2 216 0 5 1247 326 236 85 11 chr3 86869003 86869097 -72730686 + RMER5 LTR ERV1 8 108 -426 5 1247 270 280 58 29 chr3 86869154 86869257 -72730526 + RMER5 LTR ERV1 238 343 -191 5 1247 583 216 120 0 chr3 86869275 86869400 -72730383 - ID_B1 SINE B4 -1 223 84 5 1247 324 0 0 0 chr3 86870483 86870519 -72729264 + (TGG)n Simple_repeat Simple_repeat 3 38 0 5 1247 1928 239 78 37 chr3 86871324 86872260 -72727523 + RMER1B Other Other 1 517 -549 5 1247 770 240 65 15 chr3 86872263 86872466 -72727317 + RMER1A Other Other 144 524 -542 5 1247 398 111 0 100 chr3 86872455 86872535 -72727248 + RMER1B Other Other 991 1062 -4 5 1247 478 271 83 77 chr3 86872725 86873049 -72726734 + LTR37A LTR ERV1 101 426 0 5 1247 1567 234 128 11 chr3 86873327 86873798 -72725985 + RMER5 LTR ERV1 1 527 -7 5 1247 420 154 0 161 chr3 86873932 86874025 -72725758 - B1_Mur2 SINE Alu -47 102 25 5 1247 247 255 39 0 chr3 86874231 86874282 -72725501 + tRNA-Ala-GCY_ tRNA tRNA 22 74 -1 5 1247 347 55 0 18 chr3 86874715 86874770 -72725013 + (CAAAA)n Simple_repeat Simple_repeat 3 56 0 5 1247 258 299 39 0 chr3 86874771 86874848 -72724935 - MIRc SINE MIR -141 127 48 5 1247 211 342 47 62 chr3 86875200 86875328 -72724455 + L3 LINE CR1 4221 4346 -143 5 1247 180 0 0 0 chr3 86875350 86875370 -72724413 + (CCA)n Simple_repeat Simple_repeat 1 20 0 5 1247 225 344 192 46 chr3 86876022 86876439 -72723344 + L2a LINE L2 2948 3425 -1 5 1247 209 336 136 30 chr3 86876446 86876578 -72723205 - MIRm SINE MIR -129 147 2 5 1247 265 351 11 11 chr3 86877305 86877400 -72722383 - MIRc SINE MIR -14 254 160 5 1247 252 303 61 0 chr3 86877767 86877833 -72721950 + ID4 SINE ID 1 70 -13 5 1247 2255 113 52 81 chr3 86878319 86878725 -72721058 + ORR1B1 LTR MaLR 1 394 0 5 1247 482 278 44 50 chr3 86879412 86879571 -72720212 + ID_B1 SINE B4 63 220 -4 5 1247 540 288 14 7 chr3 86879433 86879573 -72720210 + B1F2 SINE Alu 6 146 -3 5 1247 290 201 0 3 chr3 86879638 86879703 -72720080 + B1_Mus1 SINE Alu 5 66 -51 5 1247 2300 280 66 55 chr3 86879708 86880558 -72719225 + RMER13A LTR ERVK 2 860 0 5 1247 993 96 7 0 chr3 86880608 86880743 -72719040 - B1_Mus1 SINE Alu -7 141 6 5 1247 45 19 0 0 chr3 86882517 86882569 -72717214 + AT_rich Low_complexity Low_complexity 1 52 0 5 1247 24 32 0 0 chr3 86882598 86882629 -72717154 + AT_rich Low_complexity Low_complexity 1 31 0 5 1247 236 361 74 25 chr3 86884539 86884661 -72715122 - MIRm SINE MIR -135 141 14 5 1247 186 191 0 0 chr3 86886756 86886798 -72712985 + C-rich Low_complexity Low_complexity 5 46 0 5 1247 2396 84 9 6 chr3 86887900 86888222 -72711561 + ORR1A2 LTR MaLR 5 327 0 5 1247 192 380 40 40 chr3 86888304 86888430 -72711353 + MIR3 SINE MIR 34 159 -49 5 1247 310 316 7 22 chr3 86891442 86891578 -72708205 + GA-rich Low_complexity Low_complexity 1 134 0 5 1247 1015 62 7 58 chr3 86891671 86891825 -72707958 - B1_Mus1 SINE Alu 0 148 3 5 1247 193 284 136 0 chr3 86891883 86891971 -72707812 - MIRb SINE MIR -116 152 53 5 1247 366 266 88 29 chr3 86894653 86894842 -72704941 - L1MC2 LINE L1 -44 6300 6113 5 1247 445 367 24 28 chr3 86895659 86895872 -72703911 + MIRb SINE MIR 46 257 -11 5 1247 190 286 31 16 chr3 86895874 86895938 -72703845 + MIR SINE MIR 86 150 -58 5 1247 25 0 0 0 chr3 86897066 86897091 -72702692 + AT_rich Low_complexity Low_complexity 1 25 0 5 1247 188 319 99 20 chr3 86897347 86897534 -72702249 + MIR SINE MIR 7 220 -48 5 1247 211 361 58 58 chr3 86897990 86898080 -72701703 - MIRc SINE MIR -6 262 176 5 1247 516 32 0 0 chr3 86898080 86898142 -72701641 + (GGAA)n Simple_repeat Simple_repeat 4 65 0 5 1247 211 361 58 58 chr3 86898142 86898292 -72701491 - MIRc SINE MIR -93 175 23 5 1247 495 0 0 0 chr3 86898508 86898563 -72701220 + (GA)n Simple_repeat Simple_repeat 1 55 0 5 1247 235 119 0 0 chr3 86899159 86899201 -72700582 - B1_Mur4 SINE Alu 0 150 109 5 1247 228 35 0 0 chr3 86899206 86899235 -72700548 + (TG)n Simple_repeat Simple_repeat 2 30 0 5 1247 583 286 61 7 chr3 86899254 86899402 -72700381 - B3A SINE B2 -38 160 5 5 1247 255 61 0 0 chr3 86899938 86899971 -72699812 + (GA)n Simple_repeat Simple_repeat 1 33 0 5 155 221 341 90 0 chr3 86900605 86900753 -72699030 - MIR SINE MIR -88 180 19 5 1248 1163 54 0 7 chr3 86900784 86900933 -72698850 - B1_Mus1 SINE Alu 0 148 1 6 1248 284 239 43 21 chr3 86901560 86901577 -72698206 - ID_B1 SINE B4 -127 97 2 6 1248 294 260 39 0 chr3 86901577 86901654 -72698129 - ID4_ SINE ID -2 81 2 6 1248 342 0 0 0 chr3 86903448 86903486 -72696297 + (TG)n Simple_repeat Simple_repeat 2 39 0 6 1248 432 0 0 0 chr3 86904629 86904677 -72695106 + (GA)n Simple_repeat Simple_repeat 2 49 0 6 1248 381 43 0 0 chr3 86905818 86905865 -72693918 + (CA)n Simple_repeat Simple_repeat 1 47 0 6 1248 201 233 0 0 chr3 86906342 86906385 -72693398 + C-rich Low_complexity Low_complexity 2 44 0 6 1248 238 294 116 23 chr3 86906609 86906738 -72693045 - MIRb SINE MIR 0 268 128 6 1248 362 235 12 0 chr3 86907617 86907698 -72692085 - ID4 SINE ID 0 83 2 6 1248 422 346 26 26 chr3 86909166 86909356 -72690427 + MIR3 SINE MIR 17 206 -2 6 1248 212 77 26 0 chr3 86909921 86909960 -72689823 + (CAA)n Simple_repeat Simple_repeat 2 41 0 6 1248 707 289 58 0 chr3 86910216 86910424 -72689359 + ID_B1 SINE B4 3 222 -2 6 1248 325 20 20 39 chr3 86911759 86911810 -72687973 + (CCCCCA)n Simple_repeat Simple_repeat 3 52 0 6 1248 409 150 0 24 chr3 86911921 86912003 -72687780 - URR1B DNA MER1_type -36 189 110 6 1248 280 322 8 17 chr3 86912310 86912427 -72687356 - PB1D10 SINE Alu 0 117 2 6 1248 350 261 29 5 chr3 86912841 86912939 -72686844 - L2a LINE L2 0 3426 3269 6 1248 1006 131 17 0 chr3 86913973 86914149 -72685634 + (GGAA)n Simple_repeat Simple_repeat 1 179 0 6 1248 217 214 24 0 chr3 86914149 86914191 -72685592 + polypurine Low_complexity Low_complexity 1 43 0 6 1248 459 0 0 0 chr3 86914260 86914311 -72685472 + (TG)n Simple_repeat Simple_repeat 1 51 0 6 1248 423 0 0 0 chr3 86914311 86914357 -72685426 + (GA)n Simple_repeat Simple_repeat 1 47 0 6 1248 5902 93 29 0 chr3 86917530 86918394 -72681389 - L1_Mus3 LINE L1 -1 6637 5749 6 1248 723 289 20 0 chr3 86918522 86918726 -72681057 - B3 SINE B2 -4 212 5 6 1248 3146 191 95 14 chr3 86919871 86920536 -72679247 + RMER1B Other Other 30 1066 0 6 1248 413 92 31 0 chr3 86923094 86923159 -72676624 + HAL1-2a_MD LINE L1 2403 2469 -555 6 1248 500 265 0 0 chr3 86923904 86924006 -72675777 - PB1D7 SINE Alu -7 113 12 6 1248 230 273 230 10 chr3 86924057 86924145 -72675638 + B1_Mus2 SINE Alu 1 110 -37 6 1248 635 260 60 16 chr3 86924145 86924329 -72675454 + B3A SINE B2 2 193 -5 6 1248 382 250 48 132 chr3 86924569 86924735 -72675048 + B4 SINE B4 72 223 -69 6 1248 804 145 14 14 chr3 86924596 86924736 -72675047 + B1_Mur3 SINE Alu 9 148 -1 6 1248 530 250 58 22 chr3 86924862 86925001 -72674782 - RSINE1 SINE B4 -11 154 11 6 1248 267 133 0 0 chr3 86925028 86925073 -72674710 + (TG)n Simple_repeat Simple_repeat 1 45 0 6 1248 1243 99 39 0 chr3 86925148 86925330 -72674453 + B2_Mm2 SINE B2 2 190 -5 6 1248 698 88 0 124 chr3 86926350 86926479 -72673304 + B2_Mm2 SINE B2 3 115 -80 6 1248 282 175 0 39 chr3 86926495 86926562 -72673221 + B2_Mm2 SINE B2 47 109 -107 6 1248 21 0 0 0 chr3 86926580 86926601 -72673182 + AT_rich Low_complexity Low_complexity 1 21 0 6 1248 257 296 33 43 chr3 86926712 86926804 -72672979 + ID_B1 SINE B4 114 204 -20 6 1248 499 341 19 5 chr3 86927485 86927694 -72672089 + L2 LINE L2 2662 2873 -546 6 1248 758 157 7 0 chr3 86928931 86929071 -72670712 + CT-rich Low_complexity Low_complexity 1 141 0 6 1248 506 360 12 0 chr3 86929855 86930027 -72669756 - L3 LINE CR1 -212 4277 4104 6 1248 2567 189 101 37 chr3 86930470 86930618 -72669165 - Lx9 LINE L1 0 7644 7513 6 1248 270 0 0 0 chr3 86930618 86930648 -72669135 + (TG)n Simple_repeat Simple_repeat 2 31 0 6 1248 2567 189 101 37 chr3 86930648 86931152 -72668631 - Lx9 LINE L1 -132 7512 6950 6 1248 1221 243 22 22 chr3 86931230 86931508 -72668275 - B4A SINE B4 0 292 15 6 1248 734 310 117 46 chr3 86931514 86931662 -72668121 + L2a LINE L2 2304 2467 -952 6 1248 273 315 0 0 chr3 86931662 86931735 -72668048 + ID4_ SINE ID 2 74 -9 6 1248 734 310 117 46 chr3 86931735 86932107 -72667676 + L2a LINE L2 2468 2861 -558 6 1248 230 295 77 0 chr3 86932195 86932273 -72667510 + MER21B LTR ERV1 24 107 -756 6 1248 529 319 7 0 chr3 86932311 86932446 -72667337 - ID_B1 SINE B4 -7 217 82 6 1248 229 307 55 33 chr3 86932693 86932784 -72666999 + MER21B LTR ERV1 487 579 -284 6 1248 21 0 0 0 chr3 86933004 86933025 -72666758 + GC_rich Low_complexity Low_complexity 1 21 0 6 1248 393 274 117 94 chr3 86933118 86933468 -72666315 + ORR1E LTR MaLR 1 358 -1 6 1248 204 254 48 0 chr3 86933513 86933576 -72666207 + L2a LINE L2 3217 3282 -144 6 1248 243 0 0 0 chr3 86933612 86933639 -72666144 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 6 1248 661 78 0 0 chr3 86933640 86933730 -72666053 - B1_Mus2 SINE Alu -12 135 46 6 1248 919 141 38 38 chr3 86933866 86934050 -72665733 - B2_Mm2 SINE B2 -11 184 1 6 1248 205 383 38 25 chr3 86934361 86934519 -72665264 - MIRb SINE MIR -45 223 64 6 1248 1291 88 6 0 chr3 86936707 86936889 -72662894 + B2_Mm2 SINE B2 1 183 -12 6 1248 1072 73 0 0 chr3 86936889 86937024 -72662759 + B1_Mm SINE Alu 1 136 -11 6 1248 253 0 54 0 chr3 86937024 86937061 -72662722 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 6 1248 189 351 81 43 chr3 86937565 86937776 -72662007 - L3 LINE CR1 -16 4473 4255 6 1248 219 234 208 0 chr3 86937801 86937878 -72661905 - L2a LINE L2 -12 3414 3322 6 1248 419 211 148 0 chr3 86938911 86939015 -72660768 + B1F SINE Alu 1 117 -3 6 1248 318 87 0 0 chr3 86939807 86939853 -72659930 + (TGAA)n Simple_repeat Simple_repeat 3 48 0 6 1248 264 319 53 100 chr3 86940197 86940347 -72659436 + B4 SINE B4 77 219 -73 6 1248 599 243 7 14 chr3 86940213 86940355 -72659428 + B1F1 SINE Alu 8 148 -1 6 1248 436 155 28 39 chr3 86941149 86941330 -72658453 + (CA)n Simple_repeat Simple_repeat 2 180 0 6 1248 802 202 112 6 chr3 86941423 86941602 -72658181 - B3 SINE B2 -16 200 3 6 1248 309 330 103 62 chr3 86941944 86942283 -72657500 + ORR1E LTR MaLR 6 358 -1 6 1248 281 261 0 0 chr3 86942498 86942563 -72657220 + ID4 SINE ID 3 67 -16 6 1248 479 277 74 26 chr3 86942837 86943026 -72656757 + B3A SINE B2 1 198 0 6 1248 1328 67 0 6 chr3 86943051 86943232 -72656551 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 6 1248 246 111 0 156 chr3 86943545 86943609 -72656174 - PB1D10 SINE Alu -18 99 46 6 1248 513 315 13 65 chr3 86943597 86943750 -72656033 - RSINE1 SINE B4 -18 147 3 6 1248 189 232 175 18 chr3 86943907 86943964 -72655819 - MIRb SINE MIR -81 187 122 6 1248 257 319 70 17 chr3 86944858 86944973 -72654810 - MIRb SINE MIR -122 146 26 6 1248 598 260 60 20 chr3 86945131 86945280 -72654503 + B3A SINE B2 2 156 -42 6 1248 321 26 0 0 chr3 86945282 86945320 -72654463 + (CA)n Simple_repeat Simple_repeat 1 38 0 6 1248 23 54 0 0 chr3 86945343 86945380 -72654403 + AT_rich Low_complexity Low_complexity 1 37 0 6 1248 21 0 0 0 chr3 86945678 86945699 -72654084 + AT_rich Low_complexity Low_complexity 1 21 0 6 1248 363 321 39 56 chr3 86945733 86945911 -72653872 - MIRb SINE MIR -58 210 36 6 1248 222 239 90 0 chr3 86946753 86946820 -72652963 + ID4 SINE ID 9 81 -2 6 1248 202 268 53 18 chr3 86946935 86946992 -72652791 + L2b LINE L2 3288 3346 -29 6 1248 180 0 0 0 chr3 86947729 86947749 -72652034 + (CAAA)n Simple_repeat Simple_repeat 3 22 0 6 1248 299 311 31 45 chr3 86947751 86947904 -72651879 + MIR SINE MIR 23 177 -31 6 1248 1202 187 210 59 chr3 86949814 86950138 -72649645 + ORR1D1 LTR MaLR 1 373 -1 6 1248 645 14 0 0 chr3 86950206 86950280 -72649503 + (TC)n Simple_repeat Simple_repeat 1 74 0 6 1248 188 243 133 67 chr3 86950427 86950502 -72649281 + MIRm SINE MIR 160 239 -37 6 1248 591 104 0 0 chr3 86950942 86951048 -72648735 + (TAGA)n Simple_repeat Simple_repeat 4 109 0 6 1248 751 275 121 6 chr3 86951441 86951696 -72648087 + ID_B1 SINE B4 1 292 0 6 1248 210 180 0 0 chr3 86951696 86951757 -72648026 + (CA)n Simple_repeat Simple_repeat 1 61 0 6 1248 204 40 0 0 chr3 86951756 86951781 -72648002 + (TC)n Simple_repeat Simple_repeat 1 25 0 6 1248 264 59 0 0 chr3 86951780 86951814 -72647969 + (CA)n Simple_repeat Simple_repeat 1 34 0 6 1248 349 244 206 0 chr3 86951862 86951993 -72647790 + MIR3 SINE MIR 31 188 -20 6 1248 214 284 0 13 chr3 86952444 86952571 -72647212 + (TA)n Simple_repeat Simple_repeat 1 125 0 6 1248 514 200 34 17 chr3 86952842 86952959 -72646824 + B1_Mur1 SINE Alu 20 138 -11 6 1248 207 167 0 0 chr3 86952968 86953010 -72646773 + A-rich Low_complexity Low_complexity 1 42 0 6 1248 432 55 0 0 chr3 86953656 86953711 -72646072 + (CA)n Simple_repeat Simple_repeat 1 55 0 6 1248 477 0 0 0 chr3 86953875 86953928 -72645855 + (TG)n Simple_repeat Simple_repeat 2 54 0 6 1248 270 284 51 31 chr3 86955611 86955709 -72644074 - B1F1 SINE Alu -20 129 30 6 1248 831 180 244 0 chr3 86955752 86955924 -72643859 - B3 SINE B2 -2 214 1 6 1248 315 0 0 0 chr3 86956634 86956669 -72643114 + (TC)n Simple_repeat Simple_repeat 1 35 0 6 1248 250 199 56 24 chr3 86956697 86956779 -72643004 + PB1D10 SINE Alu 40 120 0 6 1248 1326 46 0 0 chr3 86957952 86958126 -72641657 + (TG)n Simple_repeat Simple_repeat 2 175 0 6 1248 188 314 55 55 chr3 86958214 86958305 -72641478 - L4 LINE RTE -514 1515 1425 6 1248 193 238 24 0 chr3 86959027 86959069 -72640714 - L4 LINE RTE -192 1837 1795 6 1248 409 308 42 17 chr3 86959957 86960076 -72639707 + MER20 DNA MER1_type 1 122 -97 7 1248 1230 59 59 0 chr3 86960134 86960303 -72639480 + B2_Mm1t SINE B2 1 179 -14 7 1248 343 95 310 26 chr3 86960335 86960451 -72639332 + B2_Mm2 SINE B2 47 195 0 7 1248 423 0 0 0 chr3 86961131 86961178 -72638605 + (GA)n Simple_repeat Simple_repeat 2 48 0 7 1248 396 0 0 0 chr3 86961538 86961582 -72638201 + (CA)n Simple_repeat Simple_repeat 2 45 0 7 1248 441 0 0 0 chr3 86962569 86962618 -72637165 + (TG)n Simple_repeat Simple_repeat 1 49 0 7 1248 337 323 8 0 chr3 86962660 86962784 -72636999 + (TG)n Simple_repeat Simple_repeat 1 125 0 7 1248 229 281 82 66 chr3 86963180 86963302 -72636481 + MLT1E1 LTR MaLR 387 510 -144 7 1248 201 179 26 0 chr3 86964856 86964895 -72634888 + CT-rich Low_complexity Low_complexity 4 43 0 7 1248 926 147 0 14 chr3 86966715 86966860 -72632923 + B1_Mur4 SINE Alu 8 150 0 7 1248 22 0 0 0 chr3 86967125 86967147 -72632636 + AT_rich Low_complexity Low_complexity 1 22 0 7 1248 244 330 0 54 chr3 86967967 86968060 -72631723 - MIRb SINE MIR -66 202 115 7 1248 636 14 0 0 chr3 86969491 86969564 -72630219 + (CA)n Simple_repeat Simple_repeat 1 73 0 7 1248 450 209 193 7 chr3 86970231 86970247 -72629536 + B4 SINE B4 64 223 -69 7 1248 707 151 59 0 chr3 86970247 86970366 -72629417 + B1_Mm SINE Alu 1 126 -21 7 1248 561 42 0 0 chr3 86970785 86970857 -72628926 + (CA)n Simple_repeat Simple_repeat 2 73 0 7 1248 23 0 0 0 chr3 86970915 86970938 -72628845 + AT_rich Low_complexity Low_complexity 1 23 0 7 1248 244 236 45 14 chr3 86970989 86971060 -72628723 - MIR SINE MIR -109 153 81 7 1248 223 267 51 39 chr3 86971141 86971219 -72628564 - ID2 SINE ID -4 79 1 7 1248 303 300 60 0 chr3 86972543 86972643 -72627140 + MIRb SINE MIR 60 165 -103 7 1248 346 358 48 23 chr3 86972963 86973194 -72626589 + MIRc SINE MIR 18 255 -13 7 1248 218 242 194 0 chr3 86973227 86973289 -72626494 + ID4 SINE ID 1 74 -9 7 1248 215 387 72 0 chr3 86973564 86973675 -72626108 + MIRb SINE MIR 32 150 -118 7 1248 290 237 48 67 chr3 86974329 86974433 -72625350 + MIRb SINE MIR 119 220 -48 7 1248 193 312 178 14 chr3 86974758 86974831 -72624952 - MIR SINE MIR -5 257 169 7 1248 375 78 0 0 chr3 86974831 86974882 -72624901 + (TA)n Simple_repeat Simple_repeat 1 51 0 7 1248 193 312 178 14 chr3 86974882 86974954 -72624829 - MIR SINE MIR -94 168 90 7 1248 189 147 0 0 chr3 86974988 86975022 -72624761 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 7 1248 382 244 125 23 chr3 86975038 86975126 -72624657 - B1F1 SINE Alu -34 115 19 7 1248 342 0 0 0 chr3 86977050 86977088 -72622695 + (CA)n Simple_repeat Simple_repeat 2 39 0 7 1248 229 191 0 0 chr3 86977424 86977471 -72622312 + (TG)n Simple_repeat Simple_repeat 1 47 0 7 1248 197 157 59 0 chr3 86978581 86978632 -72621151 + CT-rich Low_complexity Low_complexity 6 59 0 7 1248 205 292 0 15 chr3 86978724 86978790 -72620993 + G-rich Low_complexity Low_complexity 2 66 0 7 1248 501 17 0 0 chr3 86980081 86980139 -72619644 + (TGAA)n Simple_repeat Simple_repeat 4 61 0 7 1248 651 218 21 7 chr3 86980196 86980339 -72619444 + B1_Mur2 SINE Alu 2 146 -3 7 1248 207 100 0 0 chr3 86980648 86980678 -72619105 + (TTGG)n Simple_repeat Simple_repeat 2 31 0 7 1248 261 180 98 0 chr3 86981657 86981718 -72618065 + L2c LINE L2 3263 3329 -58 7 1248 588 29 0 0 chr3 86981848 86981918 -72617865 + (GAAA)n Simple_repeat Simple_repeat 3 72 0 7 1248 1308 79 0 0 chr3 86981920 86982098 -72617685 + (GGAA)n Simple_repeat Simple_repeat 3 180 0 7 1248 558 133 0 0 chr3 86982098 86982188 -72617595 + (GAAA)n Simple_repeat Simple_repeat 1 90 0 7 1248 1167 158 21 91 chr3 86982236 86982326 -72617457 - URR1A DNA MER1_type 0 226 150 7 1248 1233 48 7 0 chr3 86982326 86982472 -72617311 - B1_Mus2 SINE Alu 0 147 1 7 1248 1167 158 21 91 chr3 86982472 86982624 -72617159 - URR1A DNA MER1_type -77 149 1 7 1248 410 321 77 65 chr3 86983448 86983788 -72615995 + ORR1E LTR MaLR 6 349 -10 7 1248 683 132 9 0 chr3 86984552 86984658 -72615125 - B1_Mus2 SINE Alu -1 146 40 7 1248 9423 209 99 26 chr3 86984748 86987008 -72612775 - Lx7 LINE L1 0 7696 5269 7 1248 252 0 0 0 chr3 86987008 86987036 -72612747 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 7 1248 1165 59 0 0 chr3 86987036 86987171 -72612612 - B1_Mus2 SINE Alu -12 135 1 7 1248 9423 241 21 51 chr3 86987171 86987626 -72612157 - Lx7 LINE L1 -609 5268 4806 7 1248 2926 197 19 58 chr3 86987626 86988262 -72611521 + RMER19C LTR ERVK 1 611 0 7 1248 9423 241 21 51 chr3 86988262 86988438 -72611345 - Lx7 LINE L1 -1072 4805 4626 7 1248 387 0 0 0 chr3 86988438 86988481 -72611302 + (TG)n Simple_repeat Simple_repeat 2 44 0 7 1248 9423 241 21 51 chr3 86988481 86988676 -72611107 - Lx7 LINE L1 -1252 4625 4435 7 1248 2346 104 3 12 chr3 86988676 86989006 -72610777 + ORR1A2 LTR MaLR 1 327 0 7 1248 9423 241 21 51 chr3 86989006 86990465 -72609318 - Lx7 LINE L1 -1443 4434 3047 7 1248 873 136 271 0 chr3 86990465 86990642 -72609141 - URR1A DNA MER1_type 0 226 2 7 1248 9423 241 21 51 chr3 86990642 86990771 -72609012 - Lx7 LINE L1 -2831 3046 2929 7 1248 450 124 101 0 chr3 86990772 86990861 -72608922 - B2_Mm2 SINE B2 -10 185 88 7 1248 807 204 81 0 chr3 86990861 86991082 -72608701 - Lx7 LINE L1 -3809 2071 1833 7 1248 731 258 9 13 chr3 86991094 86991318 -72608465 - L1_Mur3 LINE L1 -6649 1063 841 7 1248 1843 172 21 166 chr3 86991351 86991478 -72608305 - Lx7 LINE L1 -4090 1790 1721 7 1248 1218 62 0 0 chr3 86991478 86991624 -72608159 - B1_Mus1 SINE Alu -2 146 1 7 1248 1843 172 21 166 chr3 86991624 86991812 -72607971 - Lx7 LINE L1 -4160 1720 1564 7 1248 1251 41 0 7 chr3 86991812 86991959 -72607824 - B1_Mus2 SINE Alu -1 146 1 7 1248 1843 190 49 130 chr3 86991959 86992438 -72607345 - Lx7 LINE L1 -4317 1563 1093 7 1248 1604 27 32 0 chr3 86992438 86992624 -72607159 - B2_Mm1a SINE B2 0 193 2 7 1248 1822 241 127 31 chr3 86992624 86993078 -72606705 - Lx7 LINE L1 -6636 1092 569 7 1248 261 242 30 0 chr3 86993129 86993228 -72606555 - L1_Mur3 LINE L1 -6919 793 692 7 1248 202 218 36 18 chr3 86993678 86993734 -72606049 + (CATA)n Simple_repeat Simple_repeat 3 59 0 7 1248 1572 59 0 0 chr3 86993740 86993927 -72605856 + B2_Mm2 SINE B2 1 187 -8 7 1248 2654 198 63 80 chr3 86994114 86994232 -72605551 - RMER1B Other Other -13 1053 923 7 1248 306 0 0 0 chr3 86994232 86994266 -72605517 + (CCAA)n Simple_repeat Simple_repeat 2 35 0 7 1248 2654 193 57 67 chr3 86994266 86994920 -72604863 - RMER1B Other Other -144 922 354 7 1248 281 270 51 159 chr3 86995943 86996119 -72603664 + RMER15 LTR ERVL 3 159 -416 7 1248 551 287 117 29 chr3 86996122 86996395 -72603388 + RMER15 LTR ERVL 279 575 0 7 1248 605 160 0 46 chr3 86997593 86997724 -72602059 - Lx9 LINE L1 -1 7643 7519 7 1248 423 0 0 0 chr3 86997727 86997774 -72602009 + (CA)n Simple_repeat Simple_repeat 2 48 0 7 1248 298 231 16 107 chr3 86997807 86997928 -72601855 + Lx9 LINE L1 7256 7365 -279 7 1248 384 312 0 30 chr3 86998271 86998370 -72601413 + PB1D10 SINE Alu 12 107 -10 7 1248 1925 125 106 17 chr3 86998474 86998823 -72600960 - ORR1C2 LTR MaLR 0 384 5 7 1248 413 307 10 0 chr3 86999840 86999941 -72599842 - PB1D10 SINE Alu -10 107 6 7 1248 24 32 0 0 chr3 86999949 86999980 -72599803 + AT_rich Low_complexity Low_complexity 1 31 0 7 1248 341 252 40 87 chr3 87000003 87000129 -72599654 - B1F1 SINE Alu -26 123 4 1 1248 194 0 0 37 chr3 87000586 87000613 -72599170 + (GGGGA)n Simple_repeat Simple_repeat 5 30 0 2 1248 677 261 174 52 chr3 87001012 87001437 -72598346 + Arthur1 DNA Tip100 3083 3559 -388 3 1248 349 267 64 55 chr3 87001508 87001726 -72598057 + Arthur1 DNA Tip100 3697 3916 -31 3 1248 775 99 47 7 chr3 87002579 87002726 -72597057 - URR1B DNA MER1_type -2 223 78 4 1248 249 248 210 17 chr3 87002719 87002838 -72596945 - MLT1B LTR MaLR -164 226 85 5 1248 320 200 70 12 chr3 87003234 87003320 -72596463 - MLT1B LTR MaLR -297 93 3 5 1248 5036 30 0 0 chr3 87003668 87004242 -72595541 - L1Md_T LINE L1 0 6582 6009 6 1248 434 270 51 51 chr3 87004623 87004818 -72594965 + RMER15 LTR ERVL 337 531 -44 7 1248 1455 70 37 0 chr3 87004875 87005062 -72594721 - B2_Mm2 SINE B2 0 195 2 8 1248 295 242 61 0 chr3 87005271 87005337 -72594446 + MTD LTR MaLR 2 71 -350 9 1248 385 239 148 17 chr3 87005337 87005452 -72594331 + B1_Mur2 SINE Alu 7 136 -13 1 1248 288 186 0 0 chr3 87005453 87005512 -72594271 + GA-rich Low_complexity Low_complexity 2 60 0 1 1248 2360 77 3 64 chr3 87005524 87005870 -72593913 - ORR1A2 LTR MaLR -2 325 1 1 1248 443 189 0 138 chr3 87005883 87006006 -72593777 + MTD LTR MaLR 108 213 -206 9 1248 368 153 28 0 chr3 87006007 87006079 -72593704 + MTD LTR MaLR 340 413 -6 9 1248 458 252 19 0 chr3 87006741 87006844 -72592939 + B3A SINE B2 5 109 -89 1 1248 925 242 14 19 chr3 87007253 87007468 -72592315 + B3 SINE B2 3 216 0 1 1248 382 184 70 145 chr3 87007770 87007942 -72591841 + MLT1E1A LTR MaLR 159 317 -363 1 1248 400 176 54 0 chr3 87007977 87008051 -72591732 - B3 SINE B2 -5 211 134 1 1248 195 100 0 0 chr3 87008913 87008943 -72590840 + (CCAA)n Simple_repeat Simple_repeat 2 31 0 1 1248 211 125 20 40 chr3 87008947 87008997 -72590786 + A-rich Low_complexity Low_complexity 4 52 0 1 1248 240 250 14 27 chr3 87009633 87009781 -72590002 + (TG)n Simple_repeat Simple_repeat 1 146 0 1 1248 682 319 42 32 chr3 87009805 87010090 -72589693 - B4 SINE B4 -2 290 3 2 1248 421 208 10 50 chr3 87011115 87011216 -72588567 + MTEa LTR MaLR 15 111 -268 2 1248 234 0 0 0 chr3 87011235 87011261 -72588522 + (TTTTA)n Simple_repeat Simple_repeat 1 26 0 2 1248 636 292 15 0 chr3 87011979 87012174 -72587609 + MTEa LTR MaLR 182 379 0 2 1248 1884 254 118 20 chr3 87012164 87012413 -72587370 + MTEa-int LTR MaLR 4 278 -1302 2 1248 525 264 106 20 chr3 87012413 87012564 -72587219 - RSINE1 SINE B4 0 165 2 2 1248 1884 254 118 20 chr3 87012564 87012964 -72586819 + MTEa-int LTR MaLR 279 717 -863 2 1248 508 143 46 31 chr3 87012964 87013094 -72586689 - RLTRETN_Mm LTR ERVK 0 322 191 2 1248 391 100 86 0 chr3 87013087 87013157 -72586626 + B1_Mus2 SINE Alu 72 147 0 2 1248 280 327 216 33 chr3 87013173 87013502 -72586281 - L2 LINE L2 -1152 2267 1879 2 1248 464 0 18 0 chr3 87013513 87013569 -72586214 + (GA)n Simple_repeat Simple_repeat 1 57 0 2 1248 584 233 15 15 chr3 87013569 87013700 -72586083 - ORR1D1 LTR MaLR -211 163 33 2 1248 1639 196 24 56 chr3 87014188 87014566 -72585217 + ORR1D1 LTR MaLR 9 374 0 2 1248 388 291 56 12 chr3 87014639 87014799 -72584984 + MIR SINE MIR 83 249 -13 3 1248 1158 279 87 12 chr3 87015078 87015422 -72584361 - ORR1D2 LTR MaLR 0 370 1 3 1248 2740 250 70 164 chr3 87015422 87016023 -72583760 - ORR1D2-int LTR MaLR 0 1370 856 3 1248 1181 106 0 6 chr3 87016023 87016204 -72583579 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 3 1248 1166 36 0 0 chr3 87016212 87016349 -72583434 - B1_Mus1 SINE Alu -10 138 2 3 1248 2740 250 70 164 chr3 87016349 87016778 -72583005 - ORR1D2-int LTR MaLR -515 855 377 3 1248 904 240 53 24 chr3 87016778 87016987 -72582796 + B3 SINE B2 2 216 0 3 1248 2740 250 70 164 chr3 87016987 87017043 -72582740 - ORR1D2-int LTR MaLR -994 376 367 3 1248 1122 82 7 0 chr3 87017043 87017189 -72582594 - B1_Mus1 SINE Alu 0 148 2 3 1248 2740 250 70 164 chr3 87017189 87017238 -72582545 - ORR1D2-int LTR MaLR -1004 366 328 3 1248 1555 53 0 21 chr3 87017238 87017431 -72582352 - B2_Mm1a SINE B2 -4 189 1 3 1248 2740 250 70 164 chr3 87017431 87017644 -72582139 - ORR1D2-int LTR MaLR -1043 327 137 3 1248 952 139 171 0 chr3 87018611 87018798 -72580985 + URR1B DNA MER1_type 7 225 0 3 1248 1507 221 33 16 chr3 87019069 87019432 -72580351 - ORR1D2 LTR MaLR 0 370 2 3 1248 432 0 0 0 chr3 87020166 87020214 -72579569 + (CA)n Simple_repeat Simple_repeat 2 49 0 3 1248 8783 95 16 33 chr3 87020230 87021546 -72578237 - Lx3A LINE L1 -5 6976 5695 3 1248 633 27 0 0 chr3 87021553 87021628 -72578155 + (CAG)n Simple_repeat Simple_repeat 1 75 0 4 1248 1868 213 118 21 chr3 87022183 87022668 -72577115 - MT2A LTR ERVL -1 532 1 4 1248 536 327 101 4 chr3 87024948 87025206 -72574577 - B4A SINE B4 0 292 10 4 1248 185 154 24 71 chr3 87025238 87025280 -72574503 + L2a LINE L2 3354 3393 -33 4 1248 603 0 0 0 chr3 87025617 87025684 -72574099 + (TG)n Simple_repeat Simple_repeat 1 67 0 4 1248 531 0 0 0 chr3 87025684 87025742 -72574041 + (GA)n Simple_repeat Simple_repeat 1 59 0 4 1248 239 265 85 64 chr3 87025813 87025954 -72573829 + MIRb SINE MIR 106 249 -19 4 1248 2158 270 69 44 chr3 87027568 87028738 -72571045 - ORR1E-int LTR MaLR -102 1478 7 4 1248 245 213 16 16 chr3 87028740 87028802 -72570981 + MTD LTR MaLR 318 379 0 4 1248 1580 306 64 71 chr3 87028809 87030401 -72569382 + MTD LTR MaLR 1 1577 -3 4 1248 882 141 14 0 chr3 87030433 87030575 -72569208 - B1_Mur3 SINE Alu 0 149 6 4 1248 1302 283 14 36 chr3 87030599 87030990 -72568793 + MTE2a LTR MaLR 25 419 0 5 1248 572 330 138 43 chr3 87031040 87031411 -72568372 - ORR1E-int LTR MaLR -837 743 338 4 1248 228 294 22 0 chr3 87031487 87031579 -72568204 - Lx9 LINE L1 -18 7626 7533 5 1248 264 122 0 0 chr3 87031591 87031632 -72568151 + (CA)n Simple_repeat Simple_repeat 2 42 0 5 1248 382 155 0 0 chr3 87031693 87031751 -72568032 - Lx7 LINE L1 -1275 6421 6364 5 19 16358 152 113 112 chr3 87031750 87033930 -72565853 - Lx7 LINE L1 -187 5693 3197 5 1249 1014 116 14 0 chr3 87033930 87034076 -72565707 - B1_Mus1 SINE Alu 0 148 1 5 1249 16358 152 113 112 chr3 87034076 87035546 -72564237 - Lx7 LINE L1 -2684 3196 1927 5 1249 253 156 94 0 chr3 87035546 87035610 -72564173 + RMER10A LTR ERVL 345 414 -28 5 1249 16358 152 113 112 chr3 87035610 87036030 -72563753 - Lx7 LINE L1 -2684 1926 1563 5 1249 4894 88 18 6 chr3 87036030 87036705 -72563078 - L1_Mus1 LINE L1 0 6567 5885 5 1249 16358 152 113 112 chr3 87036705 87037007 -72562776 - Lx7 LINE L1 -4318 1562 1250 5 1249 3849 217 46 5 chr3 87037435 87038325 -72561458 - Lx7 LINE L1 -6470 1258 332 5 1249 1023 300 149 31 chr3 87038324 87038718 -72561065 - L1_Rod LINE L1 -3502 2345 1906 5 1249 672 56 0 0 chr3 87038718 87038807 -72560976 + (TCCC)n Simple_repeat Simple_repeat 4 92 0 5 1249 1023 300 149 31 chr3 87038807 87039434 -72560349 - L1_Rod LINE L1 -3942 1905 1204 5 1249 2370 117 19 24 chr3 87039695 87040064 -72559719 + ORR1B2 LTR MaLR 1 367 0 5 1249 672 13 0 0 chr3 87040428 87040505 -72559278 + (GA)n Simple_repeat Simple_repeat 1 77 0 6 1249 643 220 114 10 chr3 87042089 87042371 -72557412 + MTEa LTR MaLR 41 378 -1 6 1249 241 143 35 18 chr3 87042444 87042501 -72557282 + (TATATG)n Simple_repeat Simple_repeat 3 60 0 6 1249 449 244 40 7 chr3 87042564 87042727 -72557056 - L1MA4A LINE L1 -321 5979 5815 6 1249 1040 223 89 78 chr3 87042748 87043220 -72556563 + MT2B LTR ERVL 1 539 -62 6 1249 864 0 0 0 chr3 87043495 87043591 -72556192 + (CTATT)n Simple_repeat Simple_repeat 5 100 0 6 1249 1049 260 65 40 chr3 87044020 87044373 -72555410 + MTE2a LTR MaLR 1 362 -17 6 1249 1527 167 150 6 chr3 87044724 87045038 -72554745 - RMER1B Other Other 0 1066 708 6 1249 289 267 9 45 chr3 87045367 87045477 -72554306 - L1M6 LINE L1 -4630 1866 1761 6 1249 868 233 103 29 chr3 87045532 87045853 -72553930 - MTE2b LTR MaLR 0 379 3 6 1249 338 294 110 112 chr3 87046198 87046554 -72553229 - ORR1E LTR MaLR -1 358 4 7 1249 814 136 97 7 chr3 87047482 87047637 -72552146 - URR1A DNA MER1_type -43 183 15 7 1249 1303 221 216 28 chr3 87048094 87048665 -72551118 + Lx7 LINE L1 6674 7352 -344 7 1249 762 169 36 88 chr3 87048666 87048778 -72551005 - B2_Mm2 SINE B2 -11 184 80 7 1249 420 71 0 0 chr3 87048778 87048834 -72550949 + (TTTA)n Simple_repeat Simple_repeat 2 57 0 7 1249 1202 50 0 0 chr3 87048837 87048977 -72550806 - B1_Mus1 SINE Alu -6 142 3 7 1249 762 169 36 88 chr3 87048977 87049054 -72550729 - B2_Mm2 SINE B2 -116 79 3 7 1249 271 256 22 94 chr3 87049169 87049307 -72550476 + Lx7 LINE L1 7565 7692 -4 7 1249 180 338 59 0 chr3 87049337 87049405 -72550378 + MIRc SINE MIR 51 122 -146 7 1249 189 0 0 0 chr3 87049431 87049452 -72550331 + (A)n Simple_repeat Simple_repeat 1 21 0 7 1249 1230 51 11 11 chr3 87050256 87050436 -72549347 + (TCC)n Simple_repeat Simple_repeat 1 180 0 7 1249 387 0 0 0 chr3 87050436 87050479 -72549304 + (TTC)n Simple_repeat Simple_repeat 3 45 0 7 1249 513 190 63 42 chr3 87050489 87050501 -72549282 - ID_B1 SINE B4 0 224 82 8 1249 936 78 0 0 chr3 87050501 87050629 -72549154 - B1_Mus1 SINE Alu -20 128 1 8 1249 244 215 112 0 chr3 87050868 87050975 -72548808 - Lx7 LINE L1 0 7696 7578 8 1249 276 130 0 0 chr3 87050986 87051032 -72548751 + (TCTCCC)n Simple_repeat Simple_repeat 2 47 0 8 1249 222 0 25 50 chr3 87052422 87052462 -72547321 + (TTTTA)n Simple_repeat Simple_repeat 1 39 0 8 1249 2411 93 12 0 chr3 87052664 87052987 -72546796 + ORR1A2 LTR MaLR 1 327 0 8 1249 309 370 113 20 chr3 87053456 87053757 -72546026 + MLT2F LTR ERVL 31 359 -304 8 1249 2417 120 24 5 chr3 87053752 87054130 -72545653 + RMER19B LTR ERVK 518 902 0 8 1249 556 283 0 8 chr3 87054131 87054143 -72545640 + ID SINE ID 70 80 -144 8 1249 319 336 49 14 chr3 87054143 87054285 -72545498 + B1F SINE Alu 1 147 -2 8 1249 180 111 0 0 chr3 87054291 87054318 -72545465 + (CAA)n Simple_repeat Simple_repeat 1 27 0 9 1249 736 204 0 40 chr3 87054471 87054619 -72545164 + B1_Mus2 SINE Alu 1 142 -5 9 1249 221 114 0 64 chr3 87054625 87054672 -72545111 + (TAAA)n Simple_repeat Simple_repeat 2 45 0 9 1249 227 278 64 43 chr3 87056765 87056859 -72542924 + MT2A LTR ERVL 1 96 -437 9 1249 1096 237 87 12 chr3 87056836 87057157 -72542626 + MTE2b LTR MaLR 35 379 0 9 1249 439 186 20 0 chr3 87057635 87057737 -72542046 + CT-rich Low_complexity Low_complexity 3 106 0 9 1249 653 175 50 21 chr3 87058138 87058278 -72541505 + B1_Mur1 SINE Alu 6 149 0 9 1249 21 71 0 0 chr3 87058596 87058638 -72541145 + AT_rich Low_complexity Low_complexity 1 42 0 9 1249 452 283 153 20 chr3 87059254 87059503 -72540280 - B4A SINE B4 -2 290 9 9 1249 231 310 84 15 chr3 87061873 87062004 -72537779 + MIRb SINE MIR 73 212 -56 9 1249 374 211 11 11 chr3 87062145 87062236 -72537547 + MIR SINE MIR 80 170 -92 1 1249 363 60 0 0 chr3 87062355 87062405 -72537378 + (GA)n Simple_repeat Simple_repeat 2 51 0 1 1249 329 328 0 74 chr3 87063831 87063953 -72535830 + PB1 SINE Alu 11 123 -4 1 1249 222 226 0 70 chr3 87064939 87064996 -72534787 - ID4 SINE ID 0 83 31 1 1249 277 384 0 9 chr3 87066209 87066322 -72533461 + CT-rich Low_complexity Low_complexity 3 114 0 1 1249 21 36 0 0 chr3 87066466 87066494 -72533289 + AT_rich Low_complexity Low_complexity 1 28 0 1 1249 213 39 0 0 chr3 87066547 87066573 -72533210 + (TC)n Simple_repeat Simple_repeat 1 26 0 1 1249 773 161 36 0 chr3 87066574 87066711 -72533072 - Lx9 LINE L1 -136 7508 7367 1 1249 513 0 0 0 chr3 87067106 87067163 -72532620 + (CA)n Simple_repeat Simple_repeat 2 58 0 1 1249 1543 239 77 5 chr3 87068153 87068544 -72531239 + MTD LTR MaLR 1 419 0 1 1249 3502 248 42 32 chr3 87068715 87069655 -72530128 + RMER19B LTR ERVK 1 890 -12 1 1249 182 160 20 0 chr3 87070439 87070489 -72529294 + CT-rich Low_complexity Low_complexity 1 51 0 1 1249 681 246 105 0 chr3 87070692 87070863 -72528920 + B4A SINE B4 21 209 -83 1 1249 450 0 0 0 chr3 87070864 87070914 -72528869 + (TAA)n Simple_repeat Simple_repeat 3 52 0 1 1249 717 12 0 0 chr3 87070955 87071037 -72528746 + (CA)n Simple_repeat Simple_repeat 1 82 0 1 1249 1749 262 156 30 chr3 87071319 87071987 -72527796 - Lx8 LINE L1 -10 7463 6712 1 1249 225 341 64 60 chr3 87072092 87072373 -72527410 + L1MDa LINE L1 134 415 -6218 1 1249 388 259 168 48 chr3 87072590 87072882 -72526901 - L1MB3 LINE L1 -17 6157 5831 1 1249 792 32 0 0 chr3 87072885 87072980 -72526803 + (TTC)n Simple_repeat Simple_repeat 2 96 0 1 1249 474 250 45 0 chr3 87073747 87073859 -72525924 - RSINE1 SINE B4 -43 122 6 1 1249 1930 79 61 7 chr3 87073908 87074188 -72525595 - L1Md_F3 LINE L1 -1 6583 6289 1 1249 257 204 0 114 chr3 87074188 87074286 -72525497 - L1MB3 LINE L1 -370 5813 5727 1 1249 419 272 101 48 chr3 87074302 87074491 -72525292 - Lx8 LINE L1 -1110 6363 6165 1 1249 1786 303 92 12 chr3 87074509 87075147 -72524636 + Lx8 LINE L1 6725 7413 -60 1 1249 691 284 97 13 chr3 87075280 87075662 -72524121 - L1M2 LINE L1 -824 5322 4909 1 1249 232 336 0 53 chr3 87075765 87075878 -72523905 + RMER12 LTR ERVK 744 850 -472 1 1249 222 118 0 0 chr3 87075878 87075912 -72523871 + (TA)n Simple_repeat Simple_repeat 1 34 0 1 1249 326 285 68 23 chr3 87075980 87076113 -72523670 - Lx9 LINE L1 -212 7432 7294 1 1249 1092 135 12 6 chr3 87076172 87076343 -72523440 + B2_Mm1t SINE B2 4 175 -18 1 1249 375 108 14 0 chr3 87076410 87076475 -72523308 + B2_Mm2 SINE B2 46 116 -82 1 1249 324 0 0 0 chr3 87076497 87076533 -72523250 + (TAAA)n Simple_repeat Simple_repeat 2 37 0 1 1249 296 216 167 0 chr3 87076555 87076657 -72523126 - L1M2 LINE L1 -2823 3317 3199 1 1249 183 191 0 45 chr3 87076808 87076874 -72522909 + CT-rich Low_complexity Low_complexity 1 63 0 1 1249 256 258 16 0 chr3 87076880 87076942 -72522841 - PB1D10 SINE Alu -13 104 42 1 1249 860 293 91 25 chr3 87076995 87077011 -72522772 - L1M2 LINE L1 -3138 3005 2995 1 1249 285 321 28 0 chr3 87077011 87077117 -72522666 - PB1D10 SINE Alu -8 109 1 1 1249 860 293 91 25 chr3 87077117 87077541 -72522242 - L1M2 LINE L1 -3149 2994 2536 1 1249 1839 216 23 10 chr3 87077541 87077934 -72521849 - MTD LTR MaLR 0 419 22 1 1249 300 53 0 0 chr3 87077939 87077977 -72521806 + (CAA)n Simple_repeat Simple_repeat 2 39 0 1 1249 432 294 67 67 chr3 87078014 87078386 -72521397 - L1M2 LINE L1 -3605 2538 2167 1 1249 1119 41 7 46 chr3 87078774 87078927 -72520856 - B1_Mus2 SINE Alu 0 147 1 1 1249 28 0 0 0 chr3 87079169 87079197 -72520586 + AT_rich Low_complexity Low_complexity 1 28 0 1 1249 321 289 11 11 chr3 87079903 87079994 -72519789 - L1MC4 LINE L1 -2047 5995 5905 1 1249 892 114 13 7 chr3 87080068 87080218 -72519565 + Lx LINE L1 6503 6653 -1 1 1249 33879 85 52 7 chr3 87080528 87082813 -72516970 - L1Md_F2 LINE L1 0 6582 4645 1 1249 3122 23 0 0 chr3 87082813 87083159 -72516624 - ORR1A0 LTR MaLR 0 346 1 1 1249 13972 49 23 1 chr3 87083159 87084912 -72514871 - ORR1A0-int LTR MaLR 0 1792 1 1 1249 3015 38 0 0 chr3 87084912 87085258 -72514525 - ORR1A0 LTR MaLR 0 346 1 1 1249 33879 86 39 3 chr3 87085258 87089296 -72510487 - L1Md_F2 LINE L1 -1239 4644 446 1 1249 1386 61 28 6 chr3 87089304 87089486 -72510297 - B2_Mm2 SINE B2 -8 187 2 1 1249 227 152 237 0 chr3 87089511 87089570 -72510213 - L1MD LINE L1 -1104 5042 4970 1 1249 1081 112 0 22 chr3 87089628 87089811 -72509972 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 1 1249 486 256 128 0 chr3 87089811 87089944 -72509839 - U1 snRNA snRNA -10 155 6 1 1249 5715 80 13 66 chr3 87089951 87090799 -72508984 - RLTR13B4 LTR ERVK 0 803 1 1 1249 270 374 52 0 chr3 87090921 87091076 -72508707 + RSINE1 SINE B4 3 165 0 1 1249 344 305 41 30 chr3 87091101 87091270 -72508513 - L1MD LINE L1 -1280 4866 4696 1 1249 760 174 172 11 chr3 87091288 87091474 -72508309 + B3 SINE B2 1 216 0 1 1249 358 248 151 38 chr3 87091636 87091795 -72507988 + L1MA6 LINE L1 6106 6282 -18 1 1249 3028 86 56 0 chr3 87091802 87092230 -72507553 + L1_Mus3 LINE L1 6187 6638 0 1 1249 22 0 0 0 chr3 87092332 87092354 -72507429 + AT_rich Low_complexity Low_complexity 1 22 0 1 1249 849 273 157 7 chr3 87092365 87092671 -72507112 + ORR1E LTR MaLR 6 357 -2 1 1249 500 235 14 29 chr3 87092675 87092815 -72506968 + ORR1E-int LTR MaLR 1 138 -1442 1 1249 247 188 0 20 chr3 87093198 87093247 -72506536 + ORR1E-int LTR MaLR 109 156 -1214 1 1249 280 92 16 88 chr3 87093246 87093312 -72506471 - ORR1B2 LTR MaLR -8 386 316 1 1249 687 195 8 15 chr3 87093375 87093505 -72506278 - B3 SINE B2 -86 130 2 1 1249 1694 143 76 22 chr3 87093505 87093816 -72505967 - ORR1B2 LTR MaLR -39 328 1 1 1249 683 254 124 0 chr3 87093893 87094078 -72505705 + B3 SINE B2 9 216 0 1 1249 2207 301 142 62 chr3 87094095 87094534 -72505249 + ORR1E-int LTR MaLR 248 680 -900 1 1249 1156 43 12 24 chr3 87094534 87094700 -72505083 - L1Md_F3 LINE L1 0 6584 6421 1 1249 2207 301 142 62 chr3 87094700 87095443 -72504340 + ORR1E-int LTR MaLR 681 1527 -53 1 1249 254 284 0 15 chr3 87095443 87095511 -72504272 + ORR1E LTR MaLR 1 67 -292 1 1249 2352 176 109 6 chr3 87095512 87096042 -72503741 + RLTR40 LTR ERVK 224 808 -9 1 1249 292 133 160 43 chr3 87096445 87096539 -72503244 - RLTR40 LTR ERVK -136 681 577 1 1249 587 111 10 48 chr3 87096959 87097063 -72502720 + ORR1D1 LTR MaLR 1 100 -274 1 1249 6039 87 13 4 chr3 87097064 87098437 -72501346 - L1_Mus3 LINE L1 -310 6328 4939 1 1249 1863 76 7 98 chr3 87098437 87098742 -72501041 + L1_Mus3 LINE L1 6359 6635 -3 1 1249 1322 180 67 4 chr3 87098750 87099018 -72500765 + ORR1D1 LTR MaLR 87 371 -3 1 1249 569 162 9 0 chr3 87099364 87099475 -72500308 + (TA)n Simple_repeat Simple_repeat 2 113 0 1 1249 1223 55 0 0 chr3 87099720 87099865 -72499918 + B1_Mus1 SINE Alu 2 146 -2 1 1249 186 171 0 0 chr3 87101513 87101554 -72498229 + (TTCA)n Simple_repeat Simple_repeat 3 43 0 1 1249 540 173 58 0 chr3 87101687 87101791 -72497992 + B1_Mus1 SINE Alu 39 148 0 1 1249 1260 105 18 41 chr3 87101818 87102037 -72497746 - ORR1B1 LTR MaLR 0 394 181 1 1249 3688 128 25 9 chr3 87102042 87102680 -72497103 - RMER6A LTR ERVK -106 650 3 1 1249 1152 136 89 33 chr3 87103179 87103392 -72496391 + URR1B DNA MER1_type 1 225 0 1 1249 809 171 7 33 chr3 87103482 87103633 -72496150 + B1_Mus2 SINE Alu 1 147 0 1 1249 768 71 58 0 chr3 87103646 87103801 -72495982 + (TAGA)n Simple_repeat Simple_repeat 4 167 0 1 1249 204 40 0 0 chr3 87103811 87103836 -72495947 + (CAGA)n Simple_repeat Simple_repeat 4 28 0 1 1249 804 261 4 44 chr3 87104750 87104975 -72494808 + B3 SINE B2 1 216 0 1 1249 802 144 35 14 chr3 87104991 87105132 -72494651 + B1_Mur1 SINE Alu 5 148 -1 1 1249 270 49 46 62 chr3 87105133 87105198 -72494585 + A-rich Low_complexity Low_complexity 3 66 0 1 1249 549 0 0 0 chr3 87105573 87105634 -72494149 + (TG)n Simple_repeat Simple_repeat 2 62 0 1 1249 1657 47 0 0 chr3 87105767 87105960 -72493823 + B2_Mm1a SINE B2 1 193 0 1 1249 1060 270 108 12 chr3 87105960 87106376 -72493407 - RMER5 LTR ERV1 -17 517 62 1 1249 1242 231 108 26 chr3 87110030 87110333 -72489450 + ORR1D2 LTR MaLR 1 315 -55 1 1249 483 18 0 0 chr3 87110333 87110389 -72489394 + (CAT)n Simple_repeat Simple_repeat 2 57 0 1 1249 1242 231 108 26 chr3 87110389 87110427 -72489356 + ORR1D2 LTR MaLR 316 370 0 1 1249 940 229 31 64 chr3 87111101 87111460 -72488323 + RLTR15 LTR ERVK 1 347 -12 1 1249 720 268 58 49 chr3 87111550 87111793 -72487990 + MER21B LTR ERV1 65 309 -554 1 1249 759 325 89 29 chr3 87111841 87112155 -72487628 + MER21B LTR ERV1 442 774 -89 1 1249 261 0 0 0 chr3 87112588 87112617 -72487166 + (TG)n Simple_repeat Simple_repeat 2 30 0 1 1249 1100 296 38 14 chr3 87112618 87112984 -72486799 + MTE2b LTR MaLR 5 379 0 1 1249 540 0 0 0 chr3 87113674 87113734 -72486049 + (TG)n Simple_repeat Simple_repeat 2 61 0 1 1249 4049 43 0 10 chr3 87114195 87114690 -72485093 + L1Md_F2 LINE L1 6093 6582 0 1 1249 433 296 64 0 chr3 87115291 87115416 -72484367 + B1F2 SINE Alu 2 134 -15 1 1249 1432 259 22 16 chr3 87115419 87115788 -72483995 + Lx6 LINE L1 7009 7379 -81 1 1249 443 260 247 0 chr3 87116076 87116222 -72483561 - B3A SINE B2 -16 182 1 1 1249 36336 64 1 3 chr3 87116771 87123226 -72476557 - L1Md_F2 LINE L1 -14 6568 128 1 1249 26 50 0 0 chr3 87123790 87123830 -72475953 + AT_rich Low_complexity Low_complexity 1 40 0 1 1249 480 265 237 47 chr3 87123963 87124280 -72475503 + Lx8 LINE L1 6575 6951 -522 1 1249 879 195 28 67 chr3 87124665 87124918 -72474865 + Lx5 LINE L1 5984 6226 -824 1 1249 3019 164 100 15 chr3 87124896 87125427 -72474356 + Lx5 LINE L1 6400 6975 -75 1 1249 384 22 0 0 chr3 87125435 87125480 -72474303 + (GGA)n Simple_repeat Simple_repeat 2 46 0 1 1249 7412 153 67 93 chr3 87125480 87126379 -72473404 - L1_Mur3 LINE L1 -2992 2888 2043 1 1249 2153 159 100 44 chr3 87126379 87126879 -72472904 - RLTR12B LTR ERVK 0 528 1 1 1249 7412 154 62 93 chr3 87126879 87127778 -72472005 - L1_Mur3 LINE L1 -3838 2042 1154 1 1249 759 211 5 54 chr3 87127805 87128010 -72471773 - B2_Mm2 SINE B2 0 195 1 1 1249 1155 230 52 3 chr3 87128010 87128316 -72471467 - L1_Mur3 LINE L1 -6539 1189 869 1 1249 386 299 0 47 chr3 87128312 87128484 -72471299 - L1_Mur3 LINE L1 -7412 316 153 1 1249 5513 232 83 55 chr3 87128555 87130521 -72469262 - L1_Rod LINE L1 -1417 4430 2410 1 1249 938 116 23 11 chr3 87130769 87130943 -72468840 + GA-rich Low_complexity Low_complexity 3 178 0 1 1249 246 94 0 0 chr3 87130943 87130975 -72468808 + (AGGGGG)n Simple_repeat Simple_repeat 3 34 0 1 1249 549 226 87 11 chr3 87131794 87131977 -72467806 + RMER5 LTR ERV1 40 236 -298 1 1249 1034 274 62 41 chr3 87132276 87132759 -72467024 + L1_Rod LINE L1 4869 5361 -486 1 1249 4045 241 113 76 chr3 87132775 87134200 -72465583 + Lx9 LINE L1 6135 7612 -32 2 1249 30 27 0 0 chr3 87134232 87134269 -72465514 + AT_rich Low_complexity Low_complexity 1 37 0 2 1249 570 331 20 98 chr3 87134282 87134338 -72465445 + Lx8 LINE L1 5405 5449 -434 2 1249 659 75 0 11 chr3 87134338 87134433 -72465350 + (GGAA)n Simple_repeat Simple_repeat 4 97 0 2 1249 1027 305 11 81 chr3 87134433 87134622 -72465161 + Lx8 LINE L1 5450 5630 -1843 2 1249 1884 150 150 19 chr3 87134622 87134988 -72464795 - MTD LTR MaLR -2 417 4 2 1249 1027 328 74 76 chr3 87134988 87135564 -72464219 + Lx8 LINE L1 5631 6201 -1272 2 1249 2385 205 48 70 chr3 87135564 87136189 -72463594 - RMER19C LTR ERVK 0 611 1 2 1249 1027 328 74 76 chr3 87136189 87136407 -72463376 + Lx8 LINE L1 6202 6424 -1049 2 1249 694 331 137 3 chr3 87136427 87136799 -72462984 + Lx8 LINE L1 6711 7132 -341 2 1249 735 12 0 0 chr3 87136865 87136949 -72462834 + (GA)n Simple_repeat Simple_repeat 1 84 0 2 1249 522 0 0 0 chr3 87138360 87138418 -72461365 + (TC)n Simple_repeat Simple_repeat 1 58 0 2 1249 198 0 0 0 chr3 87138418 87138439 -72461344 + (CA)n Simple_repeat Simple_repeat 1 22 0 2 1249 4716 122 15 11 chr3 87139266 87139992 -72459791 + Lx2B LINE L1 6269 6997 -3 2 1249 3531 301 90 43 chr3 87140003 87141036 -72458747 - Lx8 LINE L1 -163 7310 6221 2 1249 1227 153 32 23 chr3 87141036 87141256 -72458527 + URR1B DNA MER1_type 3 224 -1 2 1249 3531 301 90 43 chr3 87141256 87141490 -72458293 - Lx8 LINE L1 -1253 6220 5996 2 1249 1365 36 0 0 chr3 87141490 87141657 -72458126 + (TCTCCC)n Simple_repeat Simple_repeat 6 172 0 2 1249 5055 238 181 27 chr3 87141657 87143658 -72456125 - Lx8 LINE L1 -1478 5995 3377 2 1249 261 0 0 0 chr3 87143658 87143687 -72456096 + (TCTA)n Simple_repeat Simple_repeat 2 30 0 2 1249 5055 223 74 25 chr3 87143687 87143796 -72455987 - Lx8 LINE L1 -2501 3385 3269 2 1249 4734 141 24 3 chr3 87143796 87144545 -72455238 - Lx LINE L1 -1 6653 5889 2 1249 5055 223 76 25 chr3 87144545 87145157 -72454626 - Lx8 LINE L1 -2618 3268 2633 2 1249 5084 106 37 4 chr3 87145161 87145909 -72453874 - L1_Mus3 LINE L1 -2 6636 5864 2 1249 1257 121 0 0 chr3 87145910 87146084 -72453699 - L1_Mm LINE L1 -240 5643 5470 2 1249 1052 56 0 21 chr3 87146099 87146110 -72453673 - B1_Mus1 SINE Alu 0 148 140 2 1249 513 58 0 0 chr3 87146110 87146179 -72453604 + (GTTTG)n Simple_repeat Simple_repeat 2 70 0 2 1249 1052 56 0 21 chr3 87146179 87146312 -72453471 - B1_Mus1 SINE Alu -9 139 7 2 1249 257 275 0 0 chr3 87146210 87146341 -72453442 - ORR1B1-int LTR MaLR -755 754 624 2 1249 719 88 0 10 chr3 87146341 87146444 -72453339 - L1_Mm LINE L1 -496 5387 5286 2 1249 31555 83 35 6 chr3 87146436 87152432 -72447351 - L1Md_F2 LINE L1 -1 6581 400 2 1249 322 234 11 0 chr3 87152441 87152540 -72447243 - L1_Mur2 LINE L1 -2555 3325 3226 2 1249 3100 147 19 11 chr3 87152561 87153103 -72446680 + L1_Mur3 LINE L1 2263 2808 -3072 2 1249 2020 129 20 8 chr3 87153082 87153435 -72446348 + L1_Mur3 LINE L1 3120 3476 -2404 2 1249 3392 189 12 48 chr3 87153433 87154106 -72445677 + RMER1B Other Other 418 1066 0 2 1249 183 42 0 0 chr3 87154327 87154351 -72445432 + (GAAAA)n Simple_repeat Simple_repeat 5 28 0 2 1249 213 94 0 0 chr3 87154740 87154772 -72445011 + (TG)n Simple_repeat Simple_repeat 1 32 0 2 1249 285 51 0 0 chr3 87155711 87155750 -72444033 + (TTGG)n Simple_repeat Simple_repeat 2 40 0 2 1249 1498 293 157 57 chr3 87155774 87156662 -72443121 + Lx8 LINE L1 5783 6768 -705 2 1249 2007 193 33 10 chr3 87156662 87157060 -72442723 - MTD LTR MaLR -11 408 2 2 1249 550 298 25 0 chr3 87157080 87157238 -72442545 + Lx8 LINE L1 6799 6960 -513 2 1249 386 197 0 0 chr3 87157283 87157349 -72442434 - B3 SINE B2 -149 67 2 2 1249 323 252 124 16 chr3 87157378 87157499 -72442284 + B3A SINE B2 65 198 0 2 1249 1006 112 12 0 chr3 87157584 87157753 -72442030 + (GGGA)n Simple_repeat Simple_repeat 4 174 0 2 1249 1288 282 86 20 chr3 87157759 87157780 -72442003 + Lx8 LINE L1 6988 7007 -466 2 1249 1129 96 17 0 chr3 87157780 87157957 -72441826 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 2 1249 1288 282 86 20 chr3 87157957 87158391 -72441392 + Lx8 LINE L1 7008 7473 0 2 1249 580 214 62 41 chr3 87158535 87158681 -72441102 + B1F SINE Alu 1 149 0 2 1249 21 36 0 0 chr3 87158701 87158729 -72441054 + AT_rich Low_complexity Low_complexity 1 28 0 2 1249 763 228 53 5 chr3 87158741 87158931 -72440852 + B3 SINE B2 18 216 0 2 1249 250 102 33 17 chr3 87159115 87159175 -72440608 + (TCTG)n Simple_repeat Simple_repeat 3 63 0 2 1249 380 233 90 30 chr3 87159361 87159494 -72440289 - RMER15 LTR ERVL -13 562 422 2 1249 418 312 117 6 chr3 87162636 87162807 -72436976 - B4 SINE B4 -4 288 99 2 1250 195 204 0 22 chr3 87163047 87163092 -72436691 + L2b LINE L2 3108 3151 -224 2 1250 889 19 0 28 chr3 87163412 87163521 -72436262 - L1_Mus1 LINE L1 -247 6320 6215 2 1250 789 62 0 9 chr3 87163520 87163617 -72436166 + L1_Mus1 LINE L1 6441 6537 -30 2 1250 1535 107 31 0 chr3 87163617 87163842 -72435941 + L1_Mus1 LINE L1 6336 6567 0 2 1250 789 62 0 9 chr3 87163842 87163858 -72435925 + L1_Mus1 LINE L1 6538 6553 -14 2 1250 483 307 127 0 chr3 87164153 87164397 -72435386 + MER58B DNA MER1_type 65 339 -2 2 1250 21 0 0 0 chr3 87166093 87166114 -72433669 + AT_rich Low_complexity Low_complexity 1 21 0 2 1250 313 192 147 40 chr3 87166368 87166474 -72433309 - Lx8 LINE L1 -403 7070 6973 2 1250 2738 286 73 47 chr3 87166519 87167662 -72432121 - Lx8 LINE L1 -612 6861 5693 2 1250 207 88 0 0 chr3 87167683 87167717 -72432066 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 2 1250 1091 80 0 0 chr3 87167717 87167854 -72431929 - B1_Mm SINE Alu -9 138 2 2 1250 543 147 0 0 chr3 87169066 87169168 -72430615 + (GGA)n Simple_repeat Simple_repeat 1 102 0 2 1250 246 173 26 26 chr3 87170885 87170962 -72428821 + (TATAA)n Simple_repeat Simple_repeat 3 79 0 2 1250 804 131 21 42 chr3 87171021 87171148 -72428635 + B1_Mur4 SINE Alu 11 140 -10 2 1250 513 0 0 0 chr3 87171148 87171205 -72428578 + (CA)n Simple_repeat Simple_repeat 2 58 0 2 1250 804 131 21 42 chr3 87171205 87171220 -72428563 + B1_Mur4 SINE Alu 141 150 0 2 1250 372 189 0 0 chr3 87171222 87171296 -72428487 + A-rich Low_complexity Low_complexity 1 74 0 2 1250 46 33 0 0 chr3 87172096 87172156 -72427627 + AT_rich Low_complexity Low_complexity 1 60 0 2 1250 633 284 184 11 chr3 87173605 87173876 -72425907 + MER2 DNA MER2_type 2 319 -26 2 1250 300 297 10 10 chr3 87174679 87174781 -72425002 + MLT1A1 LTR MaLR 21 122 -286 2 1250 319 287 18 36 chr3 87174929 87175041 -72424742 - L1M1 LINE L1 -560 5743 5634 2 1250 4316 192 50 3 chr3 87175697 87176554 -72423229 - L1_Mur3 LINE L1 -3 5877 4981 2 1250 939 187 94 13 chr3 87176557 87176790 -72422993 - L1_Mur3 LINE L1 -1567 4313 4062 2 1250 394 244 209 20 chr3 87177105 87177406 -72422377 + L1MC LINE L1 4101 4458 -1688 2 1250 316 353 51 0 chr3 87177440 87177596 -72422187 + L1ME1 LINE L1 5079 5242 -904 2 1250 357 194 185 3 chr3 87177798 87177916 -72421867 + L1ME1 LINE L1 5531 5668 -505 2 1250 282 311 22 29 chr3 87177941 87178065 -72421718 + L1ME1 LINE L1 5846 5970 -209 2 1250 564 77 0 0 chr3 87178065 87178143 -72421640 + (CA)n Simple_repeat Simple_repeat 2 79 0 2 1250 282 311 22 29 chr3 87178143 87178157 -72421626 + L1ME1 LINE L1 5971 5983 -196 2 1250 716 249 147 22 chr3 87178689 87179148 -72420635 - RMER5 LTR ERV1 -18 516 1 2 1250 403 118 11 21 chr3 87180557 87180652 -72419131 + (TCTCTG)n Simple_repeat Simple_repeat 3 96 0 2 1250 729 0 0 0 chr3 87181497 87181578 -72418205 + (CAAAA)n Simple_repeat Simple_repeat 2 82 0 2 1250 403 60 0 29 chr3 87182316 87182385 -72417398 + (TG)n Simple_repeat Simple_repeat 2 68 0 2 1250 302 205 25 17 chr3 87182391 87182510 -72417273 + CT-rich Low_complexity Low_complexity 6 125 0 2 1250 433 246 263 9 chr3 87182675 87182888 -72416895 - Lx9 LINE L1 -13 7631 7365 2 1250 964 107 20 0 chr3 87182889 87183038 -72416745 - RLTR13D4 LTR ERVK -881 152 1 2 1250 206 107 25 62 chr3 87183315 87183395 -72416388 + T-rich Low_complexity Low_complexity 2 78 0 2 1250 186 43 0 0 chr3 87183405 87183428 -72416355 + (TTGG)n Simple_repeat Simple_repeat 2 24 0 2 1250 745 174 65 7 chr3 87183428 87183567 -72416216 - B1_Mus1 SINE Alu -1 147 1 2 1250 8026 93 3 11 chr3 87183658 87185139 -72414644 - L1_Mus4 LINE L1 -6 6630 5162 2 1250 377 198 11 0 chr3 87186110 87186201 -72413582 + CT-rich Low_complexity Low_complexity 1 92 0 2 1250 1202 114 10 72 chr3 87186374 87186582 -72413201 + B2_Mm2 SINE B2 1 195 0 2 1250 252 0 0 0 chr3 87187676 87187704 -72412079 + (TAAAAA)n Simple_repeat Simple_repeat 2 29 0 2 1250 345 187 0 54 chr3 87187784 87187914 -72411869 + GA-rich Low_complexity Low_complexity 3 125 0 2 1250 22 0 0 0 chr3 87188009 87188031 -72411752 + AT_rich Low_complexity Low_complexity 1 22 0 2 1250 198 296 100 22 chr3 87190469 87190559 -72409224 + MIRb SINE MIR 58 154 -114 2 1250 463 176 96 0 chr3 87190749 87190861 -72408922 - Lx9 LINE L1 -3 7641 7517 2 1250 297 0 0 0 chr3 87190861 87190894 -72408889 + (CA)n Simple_repeat Simple_repeat 2 34 0 2 1250 2952 181 58 18 chr3 87190894 87191500 -72408283 - Lx9 LINE L1 -161 7483 6854 2 1250 550 214 24 8 chr3 87191503 87191630 -72408153 - Lx9 LINE L1 -896 6748 6620 2 1250 197 0 71 0 chr3 87192421 87192449 -72407334 + (CAAAAA)n Simple_repeat Simple_repeat 2 31 0 2 1250 694 238 126 31 chr3 87192453 87192644 -72407139 - B3 SINE B2 -4 212 4 2 1250 180 0 0 0 chr3 87192760 87192780 -72407003 + (CAA)n Simple_repeat Simple_repeat 2 21 0 2 1250 247 341 66 14 chr3 87194319 87194530 -72405253 - Charlie20a DNA Charlie -109 698 477 2 1250 706 256 35 0 chr3 87194592 87194764 -72405019 + B3A SINE B2 6 183 -15 2 1250 297 265 36 12 chr3 87195820 87195904 -72403879 - B1F2 SINE Alu -54 95 10 2 1250 886 125 20 14 chr3 87196683 87196829 -72402954 + B1_Mur4 SINE Alu 4 150 0 2 1250 6430 25 3 3 chr3 87198019 87198767 -72401016 - L1Md_F3 LINE L1 -2 6582 5835 2 1250 1332 168 243 0 chr3 87199595 87199904 -72399879 + ORR1C2 LTR MaLR 1 384 0 2 1250 684 296 83 79 chr3 87200125 87200823 -72398960 + L1_Mur3 LINE L1 1720 2420 -3460 2 1250 447 152 12 3 chr3 87200893 87200990 -72398793 - B1_Mur3 SINE Alu -9 140 39 2 1250 282 0 0 133 chr3 87200990 87201080 -72398703 + (TCTCCC)n Simple_repeat Simple_repeat 4 81 0 2 1250 1230 291 39 25 chr3 87201397 87201939 -72397844 + L1M2 LINE L1 2423 3005 -3138 2 1250 250 325 8 8 chr3 87202036 87202160 -72397623 + L1_Mur3 LINE L1 3259 3382 -2498 2 1250 1134 276 108 56 chr3 87202159 87202420 -72397363 + L1_Mur3 LINE L1 4408 4675 -1205 2 1250 360 0 0 0 chr3 87202420 87202460 -72397323 + (CA)n Simple_repeat Simple_repeat 2 41 0 2 1250 1134 276 108 56 chr3 87202460 87202900 -72396883 + L1_Mur3 LINE L1 4676 5146 -734 2 1250 1605 286 113 19 chr3 87202989 87203580 -72396203 - Lx7 LINE L1 -451 7245 6599 2 1250 24 0 0 0 chr3 87203580 87203604 -72396179 + AT_rich Low_complexity Low_complexity 1 24 0 2 1250 301 315 61 17 chr3 87205871 87206052 -72393731 + MER53 DNA hAT 2 190 -3 2 1250 535 292 140 37 chr3 87206784 87207133 -72392650 + RMER13A LTR ERVK 273 657 -203 2 1250 372 237 129 54 chr3 87208130 87208277 -72391506 - RSINE1 SINE B4 -6 159 2 2 1250 490 298 90 10 chr3 87208279 87208479 -72391304 - L1MC4 LINE L1 -462 7580 7365 2 1250 3028 141 49 30 chr3 87208485 87209055 -72390728 - RMER19B LTR ERVK 0 902 322 3 1250 1111 106 0 22 chr3 87209136 87209320 -72390463 + (TATG)n Simple_repeat Simple_repeat 1 180 0 3 1250 897 190 0 0 chr3 87209320 87209499 -72390284 + (TG)n Simple_repeat Simple_repeat 2 180 0 3 1250 462 143 0 0 chr3 87209504 87209581 -72390202 + (TATG)n Simple_repeat Simple_repeat 2 78 0 3 1250 223 212 212 0 chr3 87209583 87209649 -72390134 + B4 SINE B4 40 119 -173 3 1250 228 266 332 5 chr3 87209865 87210058 -72389725 - L1MC4 LINE L1 -962 7080 6825 2 1250 213 39 0 0 chr3 87210112 87210138 -72389645 + (TTAA)n Simple_repeat Simple_repeat 4 29 0 3 1250 22 0 0 0 chr3 87210480 87210502 -72389281 + AT_rich Low_complexity Low_complexity 1 22 0 3 1250 835 160 28 0 chr3 87210736 87210880 -72388903 + B1_Mur3 SINE Alu 1 148 -1 3 1250 594 75 0 0 chr3 87210884 87210964 -72388819 + (GA)n Simple_repeat Simple_repeat 2 81 0 3 1250 240 273 0 29 chr3 87211085 87211153 -72388630 + Tigger9b DNA MER2_type 179 244 -380 3 1250 373 273 91 0 chr3 87211193 87211303 -72388480 + MTEb LTR MaLR 1 120 -259 3 1250 406 294 0 23 chr3 87211300 87211429 -72388354 + MTEb LTR MaLR 244 369 -10 3 1250 361 358 106 11 chr3 87211415 87211697 -72388086 + Tigger9b DNA MER2_type 314 622 -2 3 1250 21 0 0 0 chr3 87212572 87212593 -72387190 + AT_rich Low_complexity Low_complexity 1 21 0 3 1250 3933 73 10 2 chr3 87212744 87213264 -72386519 - L1_Mus3 LINE L1 -1 6637 6114 3 1250 259 263 187 73 chr3 87214091 87214214 -72385569 - RSINE1 SINE B4 -26 139 3 3 1250 948 65 0 0 chr3 87214278 87214402 -72385381 + (TG)n Simple_repeat Simple_repeat 1 124 0 3 1250 347 315 28 0 chr3 87215586 87215694 -72384089 + CT-rich Low_complexity Low_complexity 3 113 0 3 1250 394 250 79 16 chr3 87216923 87216976 -72382807 - MT2A LTR ERVL -399 134 83 3 1250 396 0 0 0 chr3 87216976 87217020 -72382763 + (CA)n Simple_repeat Simple_repeat 2 45 0 3 1250 394 250 79 16 chr3 87217020 87217092 -72382691 - MT2A LTR ERVL -451 82 2 3 1250 563 257 76 32 chr3 87217306 87217491 -72382292 - B3A SINE B2 -4 194 2 3 1250 4667 211 55 10 chr3 87217730 87218534 -72381249 + Lx5 LINE L1 5980 6820 -230 3 1250 198 0 0 0 chr3 87218534 87218556 -72381227 + (CCTG)n Simple_repeat Simple_repeat 1 22 0 3 1250 4667 211 55 10 chr3 87218556 87218772 -72381011 + Lx5 LINE L1 6821 7045 -5 3 1250 312 224 50 58 chr3 87218793 87218917 -72380866 + L1MC4a LINE L1 6615 6774 -1108 3 1250 4754 101 57 16 chr3 87219105 87219812 -72379971 - RMER19A LTR ERVK -1 736 1 3 1250 778 231 18 184 chr3 87219812 87220035 -72379748 + B3 SINE B2 7 206 -10 3 1250 257 309 36 29 chr3 87221874 87222014 -72377769 + ORR1D2 LTR MaLR 225 365 -5 3 1250 564 174 114 34 chr3 87222020 87222169 -72377614 + RLTR14-int LTR ERV1 390 550 -4767 3 1250 602 216 43 56 chr3 87222343 87222505 -72377278 + RLTR14-int LTR ERV1 548 707 -4610 3 1250 1142 146 50 23 chr3 87222505 87222723 -72377060 + ORR1C1 LTR MaLR 155 378 0 3 1250 3616 177 75 170 chr3 87222723 87223591 -72376192 + RLTR14-int LTR ERV1 1443 2178 -3139 3 1250 450 0 0 0 chr3 87223591 87223641 -72376142 + (CATA)n Simple_repeat Simple_repeat 2 51 0 3 1250 3616 177 75 170 chr3 87223641 87223893 -72375890 + RLTR14-int LTR ERV1 2179 2455 -2862 3 1250 1609 176 34 10 chr3 87223888 87224181 -72375602 + RLTR14-int LTR ERV1 3488 3787 -1530 3 1250 1404 231 28 25 chr3 87224201 87224520 -72375263 + RLTR14-int LTR ERV1 3851 4170 -1147 3 1250 1032 144 40 6 chr3 87224517 87224692 -72375091 + RLTR14-int LTR ERV1 4861 5041 -276 3 1250 1305 94 11 6 chr3 87224692 87224874 -72374909 + B2_Mm2 SINE B2 2 184 -11 3 1250 332 87 43 0 chr3 87224888 87224934 -72374849 + RLTR14-int LTR ERV1 5270 5317 0 3 1250 2113 166 35 3 chr3 87224954 87225322 -72374461 + RLTR14 LTR ERV1 3 382 0 3 1250 255 300 171 32 chr3 87225869 87226120 -72373663 + L2a LINE L2 3056 3341 -85 3 1250 245 306 74 8 chr3 87226456 87226578 -72373205 - MLT1J1 LTR MaLR -276 168 39 3 1250 184 309 115 21 chr3 87226654 87226750 -72373033 + MIRc SINE MIR 16 120 -148 3 1250 531 0 0 0 chr3 87227644 87227703 -72372080 + (TA)n Simple_repeat Simple_repeat 2 60 0 3 1250 581 337 107 41 chr3 87228220 87228921 -72370862 - MER45B DNA Tip100 -32 1008 244 3 1250 383 225 96 52 chr3 87228921 87229031 -72370752 - MTEa LTR MaLR 0 379 261 3 1250 887 9 0 18 chr3 87229031 87229140 -72370643 + (TTAGGG)n Simple_repeat Simple_repeat 6 112 0 3 1250 383 225 96 52 chr3 87229140 87229165 -72370618 - MTEa LTR MaLR -119 260 238 3 1250 197 33 0 32 chr3 87229329 87229360 -72370423 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 3 1250 687 203 75 0 chr3 87229396 87229529 -72370254 - B1_Mur1 SINE Alu -6 143 1 3 1250 232 335 91 5 chr3 87229585 87229783 -72370000 + L1_Mur3 LINE L1 616 830 -6898 3 1250 248 203 26 26 chr3 87230157 87230233 -72369550 + L1_Mur3 LINE L1 843 918 -6810 3 1250 242 273 57 66 chr3 87230234 87230340 -72369443 + MT2B LTR ERVL 153 257 -344 3 1250 574 233 17 0 chr3 87230263 87230383 -72369400 + B1_Mur2 SINE Alu 28 149 0 3 1250 3138 236 57 33 chr3 87230385 87231767 -72368016 + L1_Mur3 LINE L1 871 2299 -3548 3 1250 1278 220 166 18 chr3 87231784 87232122 -72367661 + RMER1B Other Other 1 388 -678 3 1250 662 195 46 23 chr3 87232143 87232316 -72367467 + L1M3 LINE L1 4496 4672 -1468 3 1250 4645 218 67 16 chr3 87232313 87232533 -72367250 + Lx9 LINE L1 6513 6752 -892 3 1250 3417 35 2 2 chr3 87232533 87232929 -72366854 - MTA_Mm LTR MaLR 0 396 1 3 1250 4645 218 67 16 chr3 87232929 87233783 -72366000 + Lx9 LINE L1 6753 7642 -2 3 1250 493 327 98 23 chr3 87233753 87234314 -72365469 + L1M5 LINE L1 2359 2961 -3185 3 1250 2036 220 23 8 chr3 87234391 87234873 -72364910 - RLTR16 LTR ERVK -12 493 5 3 1250 699 312 117 73 chr3 87234875 87235894 -72363889 + L1M5 LINE L1 2952 4015 -2131 3 1250 417 301 24 41 chr3 87235895 87236065 -72363718 + ORR1E LTR MaLR 1 167 -192 3 1250 418 314 0 25 chr3 87236358 87236521 -72363262 + L1M5 LINE L1 3919 4077 -2069 3 1250 1837 238 91 167 chr3 87236747 87237706 -72362077 - RCHARR1 DNA MER1_type -58 916 31 3 1250 2270 85 3 0 chr3 87237892 87238209 -72361574 + ORR1A2 LTR MaLR 2 319 -8 3 1250 381 314 39 46 chr3 87238432 87238447 -72361336 + B4 SINE B4 77 90 -202 3 1250 609 279 0 45 chr3 87238447 87238601 -72361182 + B1_Mur1 SINE Alu 2 148 -1 3 1250 352 312 82 51 chr3 87238679 87238875 -72360908 + L1M5 LINE L1 5504 5705 -468 3 1250 1228 48 0 0 chr3 87240463 87240610 -72359173 + B1_Mus1 SINE Alu 2 148 0 3 1250 194 81 27 0 chr3 87240610 87240647 -72359136 + (CAAA)n Simple_repeat Simple_repeat 3 40 0 3 1250 246 259 0 0 chr3 87240931 87240985 -72358798 + G-rich Low_complexity Low_complexity 4 57 0 3 1250 393 75 0 0 chr3 87241067 87241120 -72358663 + (TTCC)n Simple_repeat Simple_repeat 1 53 0 3 1250 2750 206 145 11 chr3 87241120 87241607 -72358176 - Lx6 LINE L1 0 7460 6924 3 1250 378 0 0 0 chr3 87241607 87241649 -72358134 + (TC)n Simple_repeat Simple_repeat 2 43 0 3 1250 2750 206 145 11 chr3 87241649 87241815 -72357968 - Lx6 LINE L1 -537 6923 6719 3 1250 3001 174 43 57 chr3 87241804 87242233 -72357550 - Lx6 LINE L1 -1255 6205 5790 3 1250 219 36 0 0 chr3 87242233 87242261 -72357522 + (GTTTG)n Simple_repeat Simple_repeat 2 29 0 3 1250 3001 142 32 41 chr3 87242261 87242699 -72357084 - Lx6 LINE L1 -91 5789 5347 3 1250 786 50 0 0 chr3 87242861 87242960 -72356823 + (TAAAA)n Simple_repeat Simple_repeat 2 100 0 3 1250 438 20 0 0 chr3 87243784 87243835 -72355948 + (CA)n Simple_repeat Simple_repeat 1 51 0 3 1250 252 0 0 0 chr3 87244598 87244626 -72355157 + (CA)n Simple_repeat Simple_repeat 1 28 0 3 1250 487 333 75 34 chr3 87244715 87245035 -72354748 - MT2A LTR ERVL -101 432 100 3 1250 232 364 0 0 chr3 87244994 87245060 -72354723 - MTE2a LTR MaLR -239 140 75 3 1250 507 73 0 0 chr3 87245795 87245863 -72353920 + (TCCC)n Simple_repeat Simple_repeat 1 68 0 3 1250 25 31 0 0 chr3 87246364 87246396 -72353387 + AT_rich Low_complexity Low_complexity 1 32 0 3 1250 258 56 0 0 chr3 87246746 87246782 -72353001 + (TG)n Simple_repeat Simple_repeat 2 37 0 3 1250 2375 166 36 22 chr3 87248547 87249045 -72350738 - RLTR16 LTR ERVK 0 505 1 3 1250 2051 53 0 0 chr3 87250457 87250704 -72349079 + L1_Mus1 LINE L1 6321 6567 0 3 1250 432 277 59 125 chr3 87252936 87253241 -72346542 + RMER10A LTR ERVL 10 294 -148 3 1250 188 34 0 33 chr3 87253569 87253599 -72346184 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 3 1250 418 173 40 0 chr3 87254093 87254168 -72345615 + RLTR19-int LTR ERVK 3599 3676 -2461 3 1250 297 0 0 0 chr3 87254173 87254206 -72345577 + (CA)n Simple_repeat Simple_repeat 2 34 0 3 1250 643 173 0 9 chr3 87254229 87254334 -72345449 - LSU-rRNA_Hsa rRNA rRNA -730 4305 4202 3 1250 998 203 63 77 chr3 87254463 87254762 -72345021 + RMER17C-int LTR ERVK 2595 2889 -349 3 1250 271 25 0 0 chr3 87255396 87255436 -72344347 + L1_Mus2 LINE L1 6527 6566 0 3 1250 22 0 0 0 chr3 87255436 87255458 -72344325 + AT_rich Low_complexity Low_complexity 1 22 0 3 1250 411 21 0 0 chr3 87255991 87256039 -72343744 + (TTTTA)n Simple_repeat Simple_repeat 3 50 0 3 1250 189 0 0 0 chr3 87256437 87256458 -72343325 + (TC)n Simple_repeat Simple_repeat 2 22 0 3 1250 650 224 86 53 chr3 87256459 87256534 -72343249 - Lx7 LINE L1 -193 7503 7418 3 1250 234 0 0 0 chr3 87256534 87256560 -72343223 + (CA)n Simple_repeat Simple_repeat 1 26 0 3 1250 650 224 86 53 chr3 87256560 87256729 -72343054 - Lx7 LINE L1 -279 7417 7252 3 1250 893 149 0 7 chr3 87256730 87256879 -72342904 - ORR1C2 LTR MaLR -1 383 236 3 1250 2550 235 17 20 chr3 87256879 87257417 -72342366 - Lx7 LINE L1 -653 7043 6508 3 1250 266 330 0 43 chr3 87259193 87259380 -72340403 + (AGGTG)n Simple_repeat Simple_repeat 2 180 0 3 1250 352 235 50 10 chr3 87261641 87261740 -72338043 - MLT1A LTR MaLR -11 363 261 3 1250 362 256 98 18 chr3 87261747 87261910 -72337873 - RMER10A LTR ERVL -15 427 252 3 1250 388 184 11 65 chr3 87261897 87261990 -72337793 - RMER10A LTR ERVL -354 88 1 3 1250 441 95 0 0 chr3 87262604 87262667 -72337116 + (TA)n Simple_repeat Simple_repeat 1 63 0 3 1250 3631 40 0 2 chr3 87262667 87263096 -72336687 - L1Md_F3 LINE L1 -25 6559 6132 3 1250 1297 227 140 137 chr3 87263097 87264330 -72335453 - RLTR19-int LTR ERVK -2168 3969 2596 3 1250 1072 284 65 56 chr3 87264379 87264688 -72335095 - RLTR19-int LTR ERVK -3263 2874 2554 3 1250 1980 158 14 35 chr3 87264688 87265055 -72334728 - RLTR15 LTR ERVK 0 359 1 3 1250 1072 234 39 91 chr3 87265055 87265470 -72334313 - RLTR19-int LTR ERVK -3584 2553 1936 3 1250 384 208 66 218 chr3 87265868 87266065 -72333718 - RLTR19-int LTR ERVK -3667 1855 1689 3 1250 272 115 177 16 chr3 87266217 87266279 -72333504 - RLTR19-int LTR ERVK -5170 967 896 3 1250 408 236 79 131 chr3 87267261 87267475 -72332308 + RMER17C-int LTR ERVK 430 632 -2606 3 1250 817 241 52 64 chr3 87267859 87268120 -72331663 - RMER17C LTR ERVK -68 342 85 3 1250 747 50 0 0 chr3 87268120 87268220 -72331563 + (TG)n Simple_repeat Simple_repeat 1 100 0 3 1250 817 241 52 64 chr3 87268220 87268304 -72331479 - RMER17C LTR ERVK -326 84 2 3 1250 369 212 141 0 chr3 87268304 87268387 -72331396 + B3 SINE B2 34 128 -88 3 1250 237 266 125 21 chr3 87268678 87268774 -72331009 + RMER10A LTR ERVL 12 117 -325 3 1250 2324 83 0 0 chr3 87268794 87269119 -72330664 - MTB_Mm LTR MaLR -82 325 1 3 1250 4817 144 64 41 chr3 87269126 87270157 -72329626 + RMER17C-int LTR ERVK 1334 3372 -2765 3 1250 4154 145 112 86 chr3 87270151 87270496 -72329287 + RMER17C-int LTR ERVK 2215 2574 -664 3 1250 237 189 0 0 chr3 87270496 87270533 -72329250 - LSU-rRNA_Hsa rRNA rRNA -788 4247 4211 3 1250 4154 145 112 86 chr3 87270533 87270818 -72328965 + RMER17C-int LTR ERVK 2575 2874 -364 3 1250 438 20 0 0 chr3 87270818 87270869 -72328914 + (TG)n Simple_repeat Simple_repeat 2 52 0 3 1250 4154 145 112 86 chr3 87270869 87271146 -72328637 + RMER17C-int LTR ERVK 2875 3183 -55 3 1250 2920 93 2 17 chr3 87271147 87271562 -72328221 + RLTR9E LTR ERVK 1 409 0 3 1250 948 169 48 71 chr3 87271563 87271773 -72328010 + ETnERV-int LTR ERVK 2 206 -3108 3 1250 6004 134 15 23 chr3 87271836 87272862 -72326921 + ETnERV2-int LTR ERVK 1995 3448 -3958 3 1250 830 86 52 0 chr3 87273112 87273228 -72326555 + ETnERV2-int LTR ERVK 3441 3562 -3844 3 1250 36623 43 3 5 chr3 87273235 87278509 -72321274 + L1Md_F3 LINE L1 422 5666 -217 4 1250 1383 42 21 5 chr3 87278508 87278697 -72321086 + L1Md_F3 LINE L1 6392 6583 -1 4 1250 16445 92 10 1 chr3 87278706 87280884 -72318899 + ETnERV2-int LTR ERVK 3566 5762 -1644 3 1250 2609 177 80 72 chr3 87280873 87282258 -72317525 + RLTR45-int LTR ERVK 3452 5443 -1801 4 1250 520 90 17 12 chr3 87282458 87282543 -72317240 + ETnERV2-int LTR ERVK 7331 7402 -4 4 1250 2753 87 51 13 chr3 87282548 87282942 -72316841 + RLTR9E LTR ERVK 1 409 0 4 1250 2906 161 113 49 chr3 87282955 87283921 -72315862 - RLTR13D1 LTR ERVK 0 1023 1 4 1250 292 122 0 39 chr3 87283922 87283973 -72315810 + RMER17C-int LTR ERVK 3190 3238 0 4 1250 444 188 12 24 chr3 87283973 87284055 -72315728 + RMER17C LTR ERVK 1 81 -329 4 1250 651 26 0 0 chr3 87284055 87284132 -72315651 + (TC)n Simple_repeat Simple_repeat 2 78 0 4 1250 251 266 81 23 chr3 87284396 87284539 -72315244 - MIR SINE MIR -81 187 40 4 1250 434 258 58 8 chr3 87285531 87285652 -72314131 - MER5A1 DNA MER1_type -1 165 39 4 1250 13776 68 55 9 chr3 87285668 87288161 -72311622 - L1VL2 LINE L1 -720 2895 284 4 1250 4117 156 95 34 chr3 87288158 87288295 -72311488 - L1_Rod LINE L1 -3632 2215 2050 4 1250 287 25 0 24 chr3 87288295 87288336 -72311447 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 4 1250 4117 156 95 34 chr3 87288336 87289048 -72310735 - L1_Rod LINE L1 -3798 2049 1307 4 1250 5629 31 0 0 chr3 87289048 87289700 -72310083 - L1Md_F3 LINE L1 0 6584 5933 4 1250 4117 188 56 37 chr3 87289700 87290482 -72309301 - L1_Rod LINE L1 -4541 1306 502 4 1250 263 206 82 118 chr3 87290653 87290763 -72309020 - L1_Rod LINE L1 -7066 542 437 4 1250 263 272 163 0 chr3 87291362 87291454 -72308329 - PB1D10 SINE Alu -7 110 4 4 1250 207 69 0 0 chr3 87292042 87292071 -72307712 + (CA)n Simple_repeat Simple_repeat 2 30 0 4 1250 1902 127 7 71 chr3 87292357 87292573 -72307210 + RMER17C LTR ERVK 1 201 -209 4 1250 600 53 0 0 chr3 87292573 87292649 -72307134 + (TC)n Simple_repeat Simple_repeat 1 76 0 4 1250 1902 127 7 71 chr3 87292649 87292855 -72306928 + RMER17C LTR ERVK 202 396 -14 4 1250 216 0 0 0 chr3 87292856 87292880 -72306903 + (T)n Simple_repeat Simple_repeat 1 24 0 4 1250 966 139 24 24 chr3 87293482 87293651 -72306132 + B2_Mm2 SINE B2 3 171 -24 4 156 842 272 45 21 chr3 87293656 87293990 -72305793 - L1_Mur3 LINE L1 -1971 3909 3568 4 1251 372 244 19 57 chr3 87294016 87294180 -72305603 - L1M2 LINE L1 -2893 2954 2803 4 1251 1672 53 0 0 chr3 87294792 87294999 -72304784 + L1Md_T LINE L1 6376 6582 0 4 1251 1260 40 0 13 chr3 87295016 87295166 -72304617 + B1_Mus1 SINE Alu 1 148 0 4 1251 185 0 0 39 chr3 87295166 87295192 -72304591 + (CAAAAA)n Simple_repeat Simple_repeat 6 30 0 4 1251 21 0 0 0 chr3 87295233 87295254 -72304529 + AT_rich Low_complexity Low_complexity 1 21 0 4 1251 1396 79 17 0 chr3 87295443 87295621 -72304162 + B2_Mm2 SINE B2 1 181 -14 4 1251 2126 284 43 108 chr3 87295953 87296386 -72303397 - L1_Mur3 LINE L1 -1236 4644 4205 4 1251 246 32 0 0 chr3 87296386 87296417 -72303366 + (TTG)n Simple_repeat Simple_repeat 2 32 0 4 1251 2126 284 43 108 chr3 87296417 87296537 -72303246 - L1_Mur3 LINE L1 -1676 4204 4079 4 1251 357 43 0 0 chr3 87296537 87296584 -72303199 + (TTTA)n Simple_repeat Simple_repeat 1 47 0 4 1251 2126 284 43 108 chr3 87296584 87297753 -72302030 - L1_Mur3 LINE L1 -1802 4078 3034 4 1251 306 170 0 0 chr3 87297760 87297813 -72301970 + MT2A LTR ERVL 410 462 -71 4 1251 531 0 0 0 chr3 87297824 87297883 -72301900 + (TAGA)n Simple_repeat Simple_repeat 3 61 0 4 1251 274 217 72 0 chr3 87297896 87297979 -72301804 + L1M3 LINE L1 4576 4664 -1476 4 1251 734 254 98 59 chr3 87298022 87298454 -72301329 + RMER15 LTR ERVL 1 542 -33 4 1251 522 0 0 0 chr3 87298667 87298725 -72301058 + (TAGA)n Simple_repeat Simple_repeat 4 61 0 4 1251 389 217 159 48 chr3 87298728 87298936 -72300847 - RLTR15 LTR ERVK -13 346 116 4 1251 409 184 25 87 chr3 87298935 87299096 -72300687 - RLTR15 LTR ERVK -176 183 33 4 1251 4255 90 17 10 chr3 87299097 87299694 -72300089 + Lx LINE L1 6053 6653 -1 4 1251 1933 176 138 2 chr3 87300545 87300979 -72298804 + Lx9 LINE L1 7144 7636 -8 4 1251 583 289 55 11 chr3 87301669 87301851 -72297932 - MER63A DNA AcHobo -13 197 8 4 1251 311 197 25 62 chr3 87301897 87301978 -72297805 - ID_B1 SINE B4 0 224 147 4 1251 471 155 28 6 chr3 87301906 87302000 -72297783 - B1_Mur1 SINE Alu -7 142 20 4 1251 21 36 0 0 chr3 87302053 87302081 -72297702 + AT_rich Low_complexity Low_complexity 1 28 0 4 1251 1733 267 93 22 chr3 87302097 87302698 -72297085 - Lx8 LINE L1 -40 7433 6790 4 1251 970 291 62 21 chr3 87304232 87304569 -72295214 + ORR1E LTR MaLR 7 357 -2 4 1251 1967 279 55 61 chr3 87304620 87305379 -72294404 + ORR1E-int LTR MaLR 31 785 -585 4 1251 1013 256 135 9 chr3 87305850 87306169 -72293614 - MTEa LTR MaLR -1 378 20 4 1251 400 319 0 53 chr3 87306042 87306194 -72293589 - MT2A LTR ERVL -387 146 3 4 1251 353 198 119 28 chr3 87306194 87306298 -72293485 - MLT1A0 LTR MaLR -234 131 18 4 1251 186 43 0 0 chr3 87306347 87306370 -72293413 + (TTCTCC)n Simple_repeat Simple_repeat 3 25 0 4 1251 237 33 0 0 chr3 87309260 87309290 -72290493 + (CAGA)n Simple_repeat Simple_repeat 2 31 0 4 1251 727 208 45 45 chr3 87309294 87309450 -72290333 - ORR1D1 LTR MaLR -218 156 1 4 1251 1878 286 118 33 chr3 87309982 87310776 -72289007 + Lx8 LINE L1 6610 7471 -2 4 1251 185 338 0 51 chr3 87314199 87314277 -72285506 - L2c LINE L2 -39 3348 3275 4 1251 368 284 73 61 chr3 87314501 87314666 -72285117 - MIRb SINE MIR -38 230 64 4 1251 1169 196 9 14 chr3 87314741 87314953 -72284830 - B3 SINE B2 -5 211 1 4 1251 309 178 38 76 chr3 87314955 87315034 -72284749 - B1F SINE Alu 0 149 74 4 1251 363 96 0 0 chr3 87315474 87315526 -72284257 + (TA)n Simple_repeat Simple_repeat 2 53 0 4 1251 1071 145 0 3 chr3 87317106 87317382 -72282401 + (TG)n Simple_repeat Simple_repeat 1 275 0 4 1251 723 229 71 71 chr3 87317430 87317627 -72282156 - B3A SINE B2 0 198 2 4 1251 238 182 0 0 chr3 87317633 87317677 -72282106 - Lx8 LINE L1 -4 7469 7426 4 1251 515 337 65 6 chr3 87318112 87318282 -72281501 - MLT1H1 LTR MaLR 0 555 376 4 1251 182 368 0 0 chr3 87318934 87318991 -72280792 - MIRm SINE MIR -126 150 94 4 1251 449 270 0 10 chr3 87319190 87319291 -72280492 + PB1D10 SINE Alu 9 108 -9 4 1251 238 350 25 0 chr3 87319312 87319392 -72280391 + BC1_Mm scRNA scRNA 6 87 -65 4 1251 323 288 100 17 chr3 87319576 87319696 -72280087 + Tigger15a DNA TcMar 6 135 -580 4 1251 319 250 204 42 chr3 87320115 87320257 -72279526 + Tigger15a DNA TcMar 490 654 -61 4 1251 728 270 61 47 chr3 87320970 87321452 -72278331 - MLT1B LTR MaLR -3 464 2 4 1251 348 83 0 0 chr3 87323405 87323453 -72276330 + (TCCC)n Simple_repeat Simple_repeat 4 51 0 4 1251 418 247 74 21 chr3 87323454 87323549 -72276234 - ID_B1 SINE B4 -16 208 109 4 1251 305 321 105 94 chr3 87323778 87324035 -72275748 + L3 LINE CR1 3635 3900 -589 4 1251 306 0 0 0 chr3 87324035 87324069 -72275714 + (TTTG)n Simple_repeat Simple_repeat 4 37 0 4 1251 305 321 105 94 chr3 87324069 87324193 -72275590 + L3 LINE CR1 3901 4020 -469 4 1251 242 321 157 19 chr3 87324226 87324385 -72275398 + L3 LINE CR1 4149 4329 -160 4 1251 190 232 17 35 chr3 87325594 87325652 -72274131 - MIR SINE MIR -107 155 99 4 1251 491 326 60 20 chr3 87325750 87325950 -72273833 - ID_B1 SINE B4 -16 208 1 4 1251 189 352 62 39 chr3 87326242 87326372 -72273411 - MIRm SINE MIR -94 182 50 4 1251 252 0 0 0 chr3 87326791 87326819 -72272964 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 4 1251 513 263 78 15 chr3 87326819 87326967 -72272816 - ID_B1 SINE B4 -75 217 61 4 1251 1136 94 178 0 chr3 87328106 87328297 -72271486 - URR1B DNA MER1_type 0 225 1 4 1251 736 171 20 48 chr3 87328592 87328739 -72271044 + B1_Mur2 SINE Alu 7 149 0 4 1251 319 248 107 66 chr3 87334021 87334142 -72265641 - B1F1 SINE Alu -5 144 19 4 1251 250 268 66 30 chr3 87334893 87335006 -72264777 + BC1_Mm scRNA scRNA 8 121 -31 4 1251 448 301 14 57 chr3 87335699 87335840 -72263943 + ID_B1 SINE B4 82 216 -8 4 1251 495 273 27 0 chr3 87335903 87336013 -72263770 + PB1D7 SINE Alu 1 113 -7 4 1251 215 81 54 0 chr3 87336040 87336077 -72263706 + (TATG)n Simple_repeat Simple_repeat 2 40 0 4 1251 26 50 0 0 chr3 87336101 87336141 -72263642 + AT_rich Low_complexity Low_complexity 1 40 0 4 1251 1142 68 7 0 chr3 87336163 87336309 -72263474 + B1_Mus1 SINE Alu 2 148 0 4 1251 365 312 183 19 chr3 87336523 87336791 -72262992 - L1MC4 LINE L1 -8 8034 7723 4 1251 342 284 34 72 chr3 87336856 87336977 -72262806 + PB1D9 SINE Alu 1 118 -31 4 1251 613 235 134 36 chr3 87337682 87337876 -72261907 - B3 SINE B2 -1 215 3 4 1251 324 235 102 7 chr3 87338467 87338573 -72261210 - B1F SINE Alu -32 117 4 4 1251 285 281 12 24 chr3 87339082 87339166 -72260617 - ID_B1 SINE B4 -58 166 84 4 1251 340 213 13 0 chr3 87339092 87339167 -72260616 - PB1D10 SINE Alu -40 77 2 4 1251 302 105 142 24 chr3 87339187 87339314 -72260469 + (ACTAG)n Simple_repeat Simple_repeat 1 142 0 4 1251 257 51 0 25 chr3 87341108 87341148 -72258635 + (TG)n Simple_repeat Simple_repeat 1 39 0 4 1251 443 57 29 0 chr3 87344194 87344264 -72255519 + (TGAG)n Simple_repeat Simple_repeat 4 75 0 4 1251 291 301 23 68 chr3 87346630 87346762 -72253021 - MIRc SINE MIR -95 173 48 4 1251 609 14 0 0 chr3 87348485 87348555 -72251228 + (CA)n Simple_repeat Simple_repeat 2 71 0 4 1251 515 200 23 162 chr3 87351603 87351776 -72248007 - B1F1 SINE Alu 0 149 1 4 1251 725 229 18 123 chr3 87351776 87351878 -72247905 - ID SINE ID -142 82 4 4 1251 644 234 22 14 chr3 87351892 87352031 -72247752 - B1F SINE Alu -5 144 5 4 1251 327 274 39 78 chr3 87352080 87352183 -72247600 + PB1D7 SINE Alu 15 113 -7 4 1251 22 35 0 0 chr3 87353541 87353570 -72246213 + AT_rich Low_complexity Low_complexity 1 29 0 4 1251 672 24 0 0 chr3 87353631 87353713 -72246070 + (TGAG)n Simple_repeat Simple_repeat 3 84 0 4 1251 360 258 111 22 chr3 87356475 87356610 -72243173 - B1F SINE Alu -1 148 2 4 1251 495 224 0 0 chr3 87356692 87356866 -72242917 + (TG)n Simple_repeat Simple_repeat 1 174 0 5 1251 263 234 0 26 chr3 87356878 87356992 -72242791 + (TG)n Simple_repeat Simple_repeat 2 112 0 5 1251 455 222 0 22 chr3 87357035 87357219 -72242564 + (TG)n Simple_repeat Simple_repeat 1 180 0 5 1251 622 224 85 7 chr3 87357420 87357573 -72242210 + MIRb SINE MIR 40 204 -64 5 1251 377 243 101 27 chr3 87358134 87358282 -72241501 + RSINE1 SINE B4 2 160 -5 5 1251 240 312 50 106 chr3 87359636 87359797 -72239986 + MamRep38 DNA hAT 104 255 -40 5 1251 291 282 12 12 chr3 87360481 87360567 -72239216 - BC1_Mm scRNA scRNA -60 92 7 5 1251 344 268 24 0 chr3 87360491 87360573 -72239210 - ID SINE ID -140 84 1 5 1251 467 278 183 30 chr3 87360599 87360796 -72238987 + Tigger5 DNA MER2_type 8 234 -2172 5 1251 370 348 17 17 chr3 87360799 87360916 -72238867 + Tigger5 DNA MER2_type 2290 2406 0 5 1251 750 219 30 67 chr3 87360974 87361189 -72238594 - B3A SINE B2 -1 215 1 5 1251 1340 65 6 0 chr3 87361438 87361607 -72238176 - B2_Mm2 SINE B2 -24 171 2 5 1251 507 122 67 0 chr3 87361639 87361748 -72238035 + B1_Mus2 SINE Alu 1 128 -21 5 1251 444 37 0 0 chr3 87362123 87362177 -72237606 + (CA)n Simple_repeat Simple_repeat 1 54 0 5 1251 244 291 46 11 chr3 87362567 87362654 -72237129 - Charlie19a DNA Charlie -46 340 251 5 1251 458 280 17 0 chr3 87363432 87363550 -72236233 + ID_B1 SINE B4 102 221 -3 5 1251 231 136 33 17 chr3 87363553 87363613 -72236170 + GA-rich Low_complexity Low_complexity 1 61 0 5 1251 2200 78 24 3 chr3 87363637 87363932 -72235851 - ORR1A2 LTR MaLR 0 327 27 5 1251 305 343 67 56 chr3 87366214 87366393 -72233390 - MER20 DNA MER1_type -30 189 9 5 1251 2481 129 37 3 chr3 87367320 87367701 -72232082 - ORR1B1 LTR MaLR 0 394 1 5 1251 255 316 0 0 chr3 87368212 87368288 -72231495 + (TA)n Simple_repeat Simple_repeat 1 76 0 5 1251 596 261 14 21 chr3 87368371 87368516 -72231267 - B1F2 SINE Alu 0 149 6 5 1251 1103 204 156 97 chr3 87368703 87368897 -72230886 + ORR1C2 LTR MaLR 1 182 -202 5 1251 801 0 0 0 chr3 87368897 87368986 -72230797 + (TC)n Simple_repeat Simple_repeat 2 90 0 5 1251 1103 204 156 97 chr3 87368986 87369107 -72230676 + ORR1C2 LTR MaLR 183 340 -44 5 1251 3348 33 8 2 chr3 87369107 87369505 -72230278 - MTB LTR MaLR 0 400 1 5 1251 1103 204 156 97 chr3 87369505 87369540 -72230243 + ORR1C2 LTR MaLR 341 372 -12 5 1251 359 361 89 0 chr3 87369544 87369724 -72230059 - MIR SINE MIR -40 222 27 5 1251 1919 168 107 27 chr3 87370577 87370951 -72228832 - MTC LTR MaLR 0 421 18 5 1251 425 208 0 0 chr3 87371186 87371258 -72228525 - ID_B1 SINE B4 0 224 153 5 1251 410 146 29 196 chr3 87371258 87371288 -72228495 - B1F SINE Alu 0 149 65 5 1251 269 204 0 0 chr3 87371259 87371303 -72228480 - ID_B1 SINE B4 -24 200 157 5 1251 315 184 0 0 chr3 87371303 87371352 -72228431 - ID_B1 SINE B4 -19 205 157 5 1251 583 274 0 30 chr3 87371352 87371484 -72228299 - ID_B1 SINE B4 -19 205 78 5 1251 339 179 0 0 chr3 87372206 87372262 -72227521 - L2a LINE L2 -2 3424 3369 5 1251 247 377 41 1 chr3 87372295 87372442 -72227341 - MER63D DNA AcHobo -663 398 271 5 1251 374 323 71 92 chr3 87373069 87373352 -72226431 - ORR1E LTR MaLR -8 351 75 5 1251 618 209 0 0 chr3 87374730 87374864 -72224919 + (CA)n Simple_repeat Simple_repeat 1 134 0 5 1251 331 154 0 0 chr3 87374867 87374919 -72224864 + HAL1-3A_ME LINE L1 1976 2027 -831 5 1251 377 212 0 59 chr3 87375032 87375117 -72224666 - ID4_ SINE ID -2 81 2 5 1251 384 309 0 10 chr3 87375331 87375429 -72224354 + B4A SINE B4 1 97 -195 5 1251 5187 201 207 38 chr3 87375434 87375908 -72223875 + Lx9 LINE L1 5653 6317 -1327 5 1251 195 129 0 0 chr3 87375908 87375939 -72223844 + (CATA)n Simple_repeat Simple_repeat 1 31 0 5 1251 5187 201 207 38 chr3 87375939 87376722 -72223061 + Lx9 LINE L1 6318 7153 -491 5 1251 1024 102 0 28 chr3 87376722 87376864 -72222919 + B1_Mus1 SINE Alu 2 139 -9 5 1251 5187 201 207 38 chr3 87376864 87377021 -72222762 + Lx9 LINE L1 7154 7277 -367 5 1251 330 87 0 0 chr3 87377021 87377067 -72222716 + (CCCTAA)n Simple_repeat Simple_repeat 3 48 0 5 1251 5187 201 207 38 chr3 87377067 87377352 -72222431 + Lx9 LINE L1 7278 7642 -2 5 1251 1014 129 20 0 chr3 87377378 87377525 -72222258 + B1_Mur4 SINE Alu 1 150 0 5 1251 256 288 17 0 chr3 87377527 87377586 -72222197 + B4A SINE B4 81 140 -152 5 1251 372 324 7 7 chr3 87377796 87377973 -72221810 + (CA)n Simple_repeat Simple_repeat 1 177 0 5 1251 24 32 0 0 chr3 87378049 87378080 -72221703 + AT_rich Low_complexity Low_complexity 1 31 0 5 1251 319 287 10 21 chr3 87378249 87378345 -72221438 + MTE2b LTR MaLR 230 324 -55 5 1251 207 100 0 0 chr3 87378345 87378375 -72221408 + (TTCC)n Simple_repeat Simple_repeat 1 30 0 5 1251 303 220 0 0 chr3 87378378 87378437 -72221346 + MTE2b LTR MaLR 316 374 -5 5 1251 647 325 52 13 chr3 87378438 87378822 -72220961 + L1M2 LINE L1 2533 2931 -3212 5 1251 503 175 33 66 chr3 87378842 87378964 -72220819 - PB1D9 SINE Alu 0 120 3 5 1251 1256 245 25 45 chr3 87378964 87379290 -72220493 - RMER13B LTR ERVK -34 874 556 5 1251 1005 184 47 22 chr3 87379291 87379573 -72220210 - RMER17B LTR ERVK -722 236 1 5 1251 21 0 0 0 chr3 87379596 87379617 -72220166 + AT_rich Low_complexity Low_complexity 1 21 0 5 1251 798 209 0 0 chr3 87379693 87379827 -72219956 + B1_Mur2 SINE Alu 7 140 -9 5 1251 216 0 0 0 chr3 87379828 87379852 -72219931 + (CAAAA)n Simple_repeat Simple_repeat 1 24 0 5 1251 922 65 32 86 chr3 87379911 87380097 -72219686 + Lx3_Mus LINE L1 6833 7008 -1 5 1251 833 218 141 21 chr3 87380214 87380406 -72219377 + B3 SINE B2 1 215 -1 5 1251 246 343 0 100 chr3 87380607 87380717 -72219066 + RSINE1 SINE B4 47 145 -20 5 1251 342 0 0 0 chr3 87380717 87380755 -72219028 + (CA)n Simple_repeat Simple_repeat 1 38 0 5 1251 995 242 30 0 chr3 87380866 87381064 -72218719 + B3 SINE B2 3 206 -10 5 1251 255 125 0 0 chr3 87381087 87381127 -72218656 + (TTC)n Simple_repeat Simple_repeat 1 40 0 5 1251 606 257 39 45 chr3 87381629 87381808 -72217975 + B3A SINE B2 3 180 -18 5 1251 24 0 0 0 chr3 87381830 87381854 -72217929 + AT_rich Low_complexity Low_complexity 1 24 0 5 1251 364 299 13 84 chr3 87381899 87382125 -72217658 + L1MC LINE L1 2236 2445 -3701 5 1251 208 200 40 0 chr3 87382125 87382175 -72217608 + (TTTG)n Simple_repeat Simple_repeat 4 55 0 5 1251 511 118 76 69 chr3 87382175 87382286 -72217497 - Lx4A LINE L1 0 7058 6940 5 1251 3425 40 2 0 chr3 87382286 87382682 -72217101 + MTB LTR MaLR 4 400 0 5 1251 511 118 76 69 chr3 87382682 87382715 -72217068 - Lx4A LINE L1 -119 6939 6914 5 1251 429 304 146 71 chr3 87382749 87383256 -72216527 + L1MD LINE L1 2473 3017 -3129 5 1251 808 273 0 41 chr3 87383271 87383305 -72216478 - B3A SINE B2 -2 196 169 5 1251 468 123 0 0 chr3 87383305 87383378 -72216405 + (TG)n Simple_repeat Simple_repeat 2 74 0 5 1251 808 273 0 41 chr3 87383378 87383538 -72216245 - B3A SINE B2 -30 168 10 5 1251 641 270 185 4 chr3 87383573 87383833 -72215950 + L1MC LINE L1 3054 3360 -2786 5 1251 1116 168 38 9 chr3 87383890 87384100 -72215683 + B3 SINE B2 1 216 0 5 1251 804 221 7 0 chr3 87384115 87384260 -72215523 - B1_Mus1 SINE Alu -1 147 2 5 1251 730 131 237 0 chr3 87384268 87384492 -72215291 - RMER1B Other Other -2 1064 788 5 1251 3512 108 6 3 chr3 87384492 87384994 -72214789 + RLTR1C LTR ERV1 1 519 0 5 1251 2039 235 187 35 chr3 87384996 87385627 -72214156 - RMER1A Other Other -303 727 1 5 1251 1354 225 94 55 chr3 87385627 87386169 -72213614 - RMER1B Other Other -557 509 1 5 1251 1083 128 0 0 chr3 87386757 87386906 -72212877 + B1_Mur4 SINE Alu 1 149 -1 5 1251 207 0 0 0 chr3 87386913 87386936 -72212847 + (TAAA)n Simple_repeat Simple_repeat 1 23 0 5 1251 23 25 0 24 chr3 87386954 87386981 -72212802 + AT_rich Low_complexity Low_complexity 1 27 0 5 1251 1410 62 17 11 chr3 87386981 87387161 -72212622 + B2_Mm2 SINE B2 1 181 -14 5 1251 23 25 0 24 chr3 87387161 87387174 -72212609 + AT_rich Low_complexity Low_complexity 1 13 0 5 1251 1794 170 22 16 chr3 87387315 87387626 -72212157 - ORR1C1 LTR MaLR 0 378 66 5 1251 632 272 38 27 chr3 87387626 87387811 -72211972 - B3A SINE B2 -11 187 1 5 1251 439 250 37 28 chr3 87387824 87387931 -72211852 - RSINE1 SINE B4 -8 157 50 5 1251 343 309 80 14 chr3 87387934 87388072 -72211711 + L1MD LINE L1 4200 4346 -1800 5 1251 366 23 0 0 chr3 87388154 87388197 -72211586 + (CA)n Simple_repeat Simple_repeat 1 43 0 5 1251 248 290 133 30 chr3 87388626 87388761 -72211022 - RSINE1 SINE B4 -14 151 3 5 1251 630 204 70 0 chr3 87389940 87390082 -72209701 + B3A SINE B2 1 152 -46 5 1251 204 40 0 0 chr3 87390083 87390108 -72209675 + (CA)n Simple_repeat Simple_repeat 2 26 0 5 1251 978 110 0 0 chr3 87390161 87390334 -72209449 + (TAGA)n Simple_repeat Simple_repeat 2 174 0 5 1251 225 250 15 0 chr3 87390367 87390435 -72209348 + Charlie7 DNA MER1_type 1728 1796 -816 5 1251 609 273 19 19 chr3 87390446 87390603 -72209180 + RSINE1 SINE B4 2 158 -7 5 1251 5410 167 45 25 chr3 87390643 87391471 -72208312 + RMER1B Other Other 79 920 -146 5 1251 183 100 0 0 chr3 87391471 87391501 -72208282 + (ATTG)n Simple_repeat Simple_repeat 2 31 0 5 1251 5410 167 45 25 chr3 87391501 87391640 -72208143 + RMER1B Other Other 921 1065 -1 5 1251 267 303 64 0 chr3 87391724 87391833 -72207950 + PB1D10 SINE Alu 1 116 -1 5 1251 480 35 0 0 chr3 87391916 87391974 -72207809 + (TG)n Simple_repeat Simple_repeat 1 58 0 5 1251 362 268 230 24 chr3 87391991 87392117 -72207666 - RSINE1 SINE B4 -12 153 2 5 1251 2061 178 40 3 chr3 87392193 87392570 -72207213 - Lx7 LINE L1 -729 6967 6577 5 1251 21 36 0 0 chr3 87392977 87393005 -72206778 + AT_rich Low_complexity Low_complexity 1 28 0 5 1251 457 316 15 0 chr3 87393094 87393227 -72206556 + Charlie7 DNA MER1_type 2095 2229 -383 5 1251 592 228 57 0 chr3 87393250 87393373 -72206410 + B1_Mur2 SINE Alu 2 131 -18 5 1251 446 236 0 7 chr3 87393380 87393525 -72206258 + GA-rich Low_complexity Low_complexity 1 144 0 5 1251 2609 250 107 19 chr3 87393536 87394275 -72205508 + Lx8 LINE L1 6435 7238 -235 5 1251 261 163 0 0 chr3 87394287 87394336 -72205447 + CT-rich Low_complexity Low_complexity 4 52 0 5 1251 899 114 17 6 chr3 87394373 87394549 -72205234 + (TTTC)n Simple_repeat Simple_repeat 2 179 0 5 1251 998 146 0 0 chr3 87394552 87394696 -72205087 - B1_Mur4 SINE Alu -6 144 1 6 1251 302 326 0 0 chr3 87394704 87394796 -72204987 + Lx8 LINE L1 7231 7322 -151 5 1251 510 314 49 16 chr3 87394806 87395049 -72204734 - B4A SINE B4 -36 256 6 6 1251 1296 93 6 0 chr3 87395084 87395256 -72204527 + B2_Mm1a SINE B2 2 174 -19 6 1251 309 228 40 9 chr3 87395326 87395423 -72204360 + PB1D10 SINE Alu 24 120 0 6 1251 575 204 152 50 chr3 87395489 87395683 -72204100 - B3A SINE B2 -3 213 1 6 1251 346 106 125 34 chr3 87395730 87395818 -72203965 - B2_Mm2 SINE B2 -8 187 92 6 1251 10684 141 26 1 chr3 87395818 87397717 -72202066 + L1VL4 LINE L1 1074 3017 -2869 6 1251 2322 117 0 13 chr3 87398085 87398465 -72201318 + L1VL4 LINE L1 3028 3402 -2484 6 1251 2212 112 16 0 chr3 87398465 87398785 -72200998 + ORR1A2 LTR MaLR 1 325 -2 6 1251 2789 128 29 31 chr3 87398787 87399304 -72200479 + ORR1A2-int LTR MaLR 1 516 -1447 6 1251 337 117 50 0 chr3 87399301 87399361 -72200422 + MT2B2 LTR ERVL 189 251 -333 6 1251 348 363 60 0 chr3 87399630 87399798 -72199985 + B4A SINE B4 1 178 -114 6 1251 7705 108 6 4 chr3 87400155 87401399 -72198384 + ORR1A2-int LTR MaLR 718 1963 0 6 1251 2002 100 51 63 chr3 87401399 87401730 -72198053 + ORR1A2 LTR MaLR 1 327 0 6 1251 2903 144 18 6 chr3 87401730 87402218 -72197565 + Lx3C LINE L1 3389 3882 -1995 6 1251 8591 118 25 13 chr3 87402214 87403818 -72195965 + Lx3C LINE L1 4540 6154 -822 6 1251 1515 154 97 3 chr3 87403818 87404117 -72195666 + IAPEY3_LTR LTR ERVK 1 327 -5 6 1251 56149 94 14 4 chr3 87404122 87411719 -72188064 + IAPEY3-int LTR ERVK 3 7680 0 6 1251 1704 149 92 10 chr3 87411719 87412025 -72187758 + IAPEY3_LTR LTR ERVK 1 331 -1 6 1251 767 148 52 0 chr3 87412033 87412168 -72187615 + Lx3C LINE L1 6160 6301 -675 6 1251 972 270 42 55 chr3 87412520 87412904 -72186879 - MTE2b LTR MaLR 0 379 1 6 1251 1272 256 60 37 chr3 87413136 87413432 -72186351 - MTD LTR MaLR -1 418 115 6 1251 1463 74 26 5 chr3 87413432 87413623 -72186160 + B2_Mm2 SINE B2 1 195 0 6 1251 1272 256 60 37 chr3 87413623 87413679 -72186104 - MTD LTR MaLR -305 114 58 6 1251 1002 206 119 4 chr3 87413667 87413726 -72186057 + MT2A LTR ERVL 26 86 -447 6 1251 444 19 0 0 chr3 87413726 87413779 -72186004 + (TTA)n Simple_repeat Simple_repeat 2 54 0 6 1251 1002 234 74 40 chr3 87413779 87414106 -72185677 + MT2A LTR ERVL 87 526 -75 6 1251 262 222 22 0 chr3 87414160 87414250 -72185533 + (TA)n Simple_repeat Simple_repeat 2 93 0 6 1251 297 149 14 69 chr3 87414269 87414331 -72185452 + Ricksha_c DNA MuDR 847 904 -1144 6 1251 2496 162 55 2 chr3 87414331 87414764 -72185019 + MERVL_2A-int LTR ERVL 1 456 -5305 6 1251 702 125 0 0 chr3 87414776 87414888 -72184895 + (TTCC)n Simple_repeat Simple_repeat 2 113 0 6 1251 3520 255 72 28 chr3 87414889 87416057 -72183726 - RMER1C Other Other 0 1342 375 6 1251 12659 145 38 30 chr3 87416069 87418243 -72181540 + MERVL_2A-int LTR ERVL 451 2642 -3119 6 1251 917 79 0 0 chr3 87418246 87418372 -72181411 - B1_Mus2 SINE Alu -21 126 1 6 1251 1007 111 103 21 chr3 87418372 87418566 -72181217 + MERVL_2A-int LTR ERVL 5472 5681 -80 6 1251 858 118 7 34 chr3 87418567 87418716 -72181067 + MERVL_2A-int LTR ERVL 5617 5761 0 6 1251 517 182 0 0 chr3 87418716 87418804 -72180979 + MT2A LTR ERVL 1 88 -445 6 1251 792 138 13 13 chr3 87418814 87418968 -72180815 + CT-rich Low_complexity Low_complexity 3 156 0 6 1251 456 203 0 0 chr3 87418968 87419042 -72180741 + polypyrimidine Low_complexity Low_complexity 3 76 0 6 1251 647 161 194 0 chr3 87419054 87419178 -72180605 - B1_Mur3 SINE Alu 0 149 2 6 1251 1175 185 248 23 chr3 87419233 87419543 -72180240 + MT2A LTR ERVL 85 464 -69 6 1251 1897 200 135 20 chr3 87419671 87420161 -72179622 - RMER15 LTR ERVL -3 572 27 6 1251 372 322 50 64 chr3 87420279 87420498 -72179285 + B4 SINE B4 66 281 -11 6 1251 231 246 14 14 chr3 87420651 87420721 -72179062 + RMER15 LTR ERVL 352 421 -154 6 1251 354 88 0 42 chr3 87421348 87421419 -72178364 + (CGGGG)n Simple_repeat Simple_repeat 5 72 0 6 1251 203 305 0 25 chr3 87421452 87421573 -72178210 + G-rich Low_complexity Low_complexity 4 121 0 6 1251 221 0 0 33 chr3 87422125 87422155 -72177628 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 6 1251 618 14 0 0 chr3 87423687 87423758 -72176025 + (TCTA)n Simple_repeat Simple_repeat 2 72 0 6 1251 244 333 0 0 chr3 87424323 87424398 -72175385 - MIRc SINE MIR -71 197 123 6 1251 207 0 0 0 chr3 87424817 87424840 -72174943 + (T)n Simple_repeat Simple_repeat 1 23 0 6 1252 465 187 134 31 chr3 87425085 87425212 -72174571 + B1F SINE Alu 8 147 -2 6 1252 705 213 7 0 chr3 87426185 87426326 -72173457 + B1_Mur1 SINE Alu 6 147 -2 6 1252 570 228 173 41 chr3 87426449 87426646 -72173137 + ID_B1 SINE B4 2 224 0 6 1252 311 150 83 0 chr3 87426665 87426725 -72173058 + B1F SINE Alu 6 70 -79 6 1252 612 244 74 5 chr3 87426752 87426945 -72172838 - B4A SINE B4 -4 288 1 6 1252 248 254 0 0 chr3 87427077 87427136 -72172647 - ID4 SINE ID 0 83 25 6 1252 318 156 0 0 chr3 87427743 87427807 -72171976 + (TG)n Simple_repeat Simple_repeat 2 65 0 6 1252 21 0 0 0 chr3 87427922 87427943 -72171840 + AT_rich Low_complexity Low_complexity 1 21 0 6 1252 23 33 0 0 chr3 87428020 87428050 -72171733 + AT_rich Low_complexity Low_complexity 1 30 0 6 1252 1147 178 39 0 chr3 87428094 87428302 -72171481 - B3 SINE B2 0 216 1 6 1252 21 0 0 0 chr3 87428313 87428334 -72171449 + AT_rich Low_complexity Low_complexity 1 21 0 6 1252 343 242 0 0 chr3 87428734 87428796 -72170987 + B3 SINE B2 128 189 -27 6 1252 267 103 0 0 chr3 87428803 87428842 -72170941 + (TA)n Simple_repeat Simple_repeat 1 39 0 6 1252 493 260 72 40 chr3 87429098 87429250 -72170533 + RSINE1 SINE B4 5 161 -4 6 1252 440 246 0 4 chr3 87430157 87430263 -72169520 + B1_Mur4 SINE Alu 1 104 -46 6 1252 21 95 0 0 chr3 87430654 87430717 -72169066 + AT_rich Low_complexity Low_complexity 1 63 0 6 1252 543 283 24 81 chr3 87431024 87431156 -72168627 - Lx7 LINE L1 -1801 5895 5761 6 1252 231 36 0 0 chr3 87431156 87431184 -72168599 + (TA)n Simple_repeat Simple_repeat 2 29 0 6 1252 543 275 4 85 chr3 87431184 87431324 -72168459 - Lx7 LINE L1 -398 5786 5664 6 1252 935 211 60 11 chr3 87431600 87431782 -72168001 + B3 SINE B2 3 193 -23 6 1252 2121 304 52 50 chr3 87433129 87433840 -72165943 - MYSERV6-int LTR ERVK -6950 2009 1292 6 1252 1340 79 62 0 chr3 87433840 87434017 -72165766 - B2_Mm1t SINE B2 -5 188 1 6 1252 2121 304 52 50 chr3 87434017 87434315 -72165468 - MYSERV6-int LTR ERVK -7668 1291 999 6 1252 598 248 200 45 chr3 87435321 87435701 -72164082 - RLTR12B LTR ERVK -43 485 47 6 1252 491 311 14 0 chr3 87436081 87436229 -72163554 - RSINE1 SINE B4 -15 150 1 6 1252 213 369 24 0 chr3 87436233 87436317 -72163466 - MIR SINE MIR -117 145 60 6 1252 3080 234 154 4 chr3 87436930 87437739 -72162044 - Lx8 LINE L1 -327 7146 6216 6 1252 1326 254 37 27 chr3 87437837 87438384 -72161399 - Lx8 LINE L1 -1611 6085 5496 6 1252 749 147 49 31 chr3 87438384 87438546 -72161237 + MTB_Mm LTR MaLR 6 170 -237 6 1252 244 233 0 43 chr3 87438581 87438675 -72161108 - L1M4 LINE L1 -783 5363 5274 6 1252 272 278 0 53 chr3 87438677 87438753 -72161030 + ID4_ SINE ID 3 74 -9 6 1252 342 0 0 0 chr3 87438763 87438801 -72160982 + (TG)n Simple_repeat Simple_repeat 2 39 0 6 1252 287 248 225 0 chr3 87438886 87439015 -72160768 - RSINE1 SINE B4 0 165 8 6 1252 285 282 177 0 chr3 87439080 87439204 -72160579 - ID_B1 SINE B4 0 224 79 6 1252 669 25 0 0 chr3 87439963 87440042 -72159741 + (GAAAA)n Simple_repeat Simple_repeat 3 81 0 6 1252 987 271 141 23 chr3 87440107 87440548 -72159235 - Lx8 LINE L1 -62 7411 6919 6 1252 547 202 74 11 chr3 87440670 87440826 -72158957 + B3 SINE B2 22 182 -13 6 1252 914 191 80 0 chr3 87441007 87441206 -72158577 - B3 SINE B2 -1 215 1 6 1252 458 246 63 28 chr3 87441517 87441659 -72158124 - B1F SINE Alu -2 147 1 6 1252 3672 122 43 9 chr3 87443396 87443430 -72156353 + RMER4B LTR ERVK 3 43 -542 6 1252 342 0 0 0 chr3 87443430 87443468 -72156315 + (CA)n Simple_repeat Simple_repeat 1 38 0 6 1252 3672 122 43 9 chr3 87443468 87443997 -72155786 + RMER4B LTR ERVK 44 584 -1 6 1252 212 184 0 0 chr3 87444111 87444149 -72155634 - MIRc SINE MIR -4 264 227 6 1252 1233 253 195 10 chr3 87444212 87444732 -72155051 - L1MB7 LINE L1 0 6184 5569 6 1252 394 301 161 25 chr3 87444732 87444974 -72154809 + B4A SINE B4 2 276 -16 6 1252 1243 34 0 0 chr3 87445046 87445193 -72154590 + B1_Mus1 SINE Alu 1 147 -1 6 1252 364 127 169 0 chr3 87445307 87445378 -72154405 - L1M4 LINE L1 -776 5408 5326 6 1252 409 240 124 31 chr3 87445379 87445508 -72154275 - B1F2 SINE Alu 0 149 9 6 1252 299 175 0 0 chr3 87445512 87445569 -72154214 - L1M4 LINE L1 -2663 5332 5276 6 1252 273 158 281 0 chr3 87445574 87445656 -72154127 - L1M4 LINE L1 -1025 5121 5017 6 1252 1433 202 114 6 chr3 87445657 87445990 -72153793 - MTD LTR MaLR -2 417 49 6 1252 21 0 0 0 chr3 87445994 87446015 -72153768 + AT_rich Low_complexity Low_complexity 1 21 0 6 1252 546 231 130 65 chr3 87446181 87446366 -72153417 + B3A SINE B2 2 198 0 6 1252 222 236 0 0 chr3 87446546 87446601 -72153182 + CT-rich Low_complexity Low_complexity 3 57 0 6 1252 421 269 171 26 chr3 87446604 87446880 -72152903 - L1M4 LINE L1 -1886 4260 3962 6 1252 638 207 0 60 chr3 87446877 87447026 -72152757 - L1M4 LINE L1 -2286 3860 3721 6 1252 389 185 70 1 chr3 87447170 87447264 -72152519 - PB1D9 SINE Alu -9 111 11 6 1252 207 0 0 0 chr3 87447270 87447293 -72152490 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 6 1252 882 245 62 0 chr3 87447932 87448124 -72151659 - B3 SINE B2 -10 206 3 6 1252 1168 82 0 0 chr3 87448557 87448703 -72151080 + B1_Mus1 SINE Alu 2 147 -1 6 1252 1161 82 0 0 chr3 87448830 87448976 -72150807 + B1_Mus2 SINE Alu 2 147 0 6 1252 180 158 0 0 chr3 87448980 87449018 -72150765 + (TCTA)n Simple_repeat Simple_repeat 1 38 0 6 1252 237 244 57 73 chr3 87449024 87449148 -72150635 - L1MA10 LINE L1 -45 6289 6168 6 1252 385 263 181 54 chr3 87449157 87449270 -72150513 - L1ME1 LINE L1 -270 5909 5795 6 1252 1442 50 27 6 chr3 87449270 87449453 -72150330 - B2_Mm2 SINE B2 -7 188 2 6 1252 385 263 181 54 chr3 87449453 87449616 -72150167 - L1ME1 LINE L1 -385 5794 5598 6 1252 945 229 118 27 chr3 87449701 87450056 -72149727 - MTD LTR MaLR 0 419 1 6 1252 578 197 69 30 chr3 87450138 87450269 -72149514 - B1_Mur2 SINE Alu -12 137 2 6 1252 401 339 31 0 chr3 87450309 87450436 -72149347 - RSINE1 SINE B4 -29 136 6 6 1252 265 313 12 0 chr3 87450545 87450628 -72149155 - L1ME1 LINE L1 -1572 4574 4491 6 1252 212 354 28 103 chr3 87450753 87450814 -72148969 - MIR SINE MIR -163 99 36 6 1252 1764 179 159 3 chr3 87450814 87451173 -72148610 - MTD LTR MaLR 0 419 5 6 1252 212 354 28 103 chr3 87451173 87451218 -72148565 - MIR SINE MIR -227 35 1 6 1252 355 290 162 25 chr3 87453412 87453842 -72145941 - L1MB5 LINE L1 -239 5939 5423 6 1252 697 241 51 8 chr3 87453930 87454164 -72145619 - L1MB5 LINE L1 -846 5300 5057 6 1252 376 255 221 44 chr3 87454160 87454476 -72145307 - L1MB5 LINE L1 -1399 4747 4376 6 1252 369 0 0 0 chr3 87454476 87454517 -72145266 + (TTTG)n Simple_repeat Simple_repeat 1 41 0 6 1252 483 196 106 9 chr3 87454517 87454630 -72145153 - B1_Mur1 SINE Alu -13 136 13 6 1252 28 29 0 0 chr3 87454651 87454686 -72145097 + AT_rich Low_complexity Low_complexity 1 35 0 7 1252 285 254 100 0 chr3 87454718 87454828 -72144955 - L1MB5 LINE L1 -1897 4249 4129 6 1252 1133 207 210 39 chr3 87454897 87455123 -72144660 + MTD LTR MaLR 2 252 -167 7 1252 1249 144 81 5 chr3 87455123 87455333 -72144450 + URR1A DNA MER1_type 1 226 0 7 1252 1133 207 210 39 chr3 87455333 87455463 -72144320 + MTD LTR MaLR 253 419 0 7 1252 627 201 154 56 chr3 87455744 87455939 -72143844 - B3 SINE B2 -1 215 2 7 1252 21 0 0 0 chr3 87456037 87456058 -72143725 + AT_rich Low_complexity Low_complexity 1 21 0 7 1252 640 164 16 0 chr3 87456087 87456209 -72143574 + ORR1D1 LTR MaLR 1 124 -250 7 1252 270 276 89 139 chr3 87456220 87456536 -72143247 + RLTR12B LTR ERVK 200 509 -19 7 1252 869 209 55 18 chr3 87456567 87456784 -72142999 + ORR1C2 LTR MaLR 53 327 -57 7 1252 299 85 21 0 chr3 87456784 87456831 -72142952 + (TTTTC)n Simple_repeat Simple_repeat 4 51 0 7 1252 1406 80 32 0 chr3 87456841 87457028 -72142755 - B2_Mm2 SINE B2 -2 193 1 7 1252 367 103 43 14 chr3 87457030 87457099 -72142684 + ORR1C2 LTR MaLR 308 378 0 7 1252 309 258 183 0 chr3 87457400 87457493 -72142290 + PB1D10 SINE Alu 1 110 -7 7 1252 1158 92 34 28 chr3 87457611 87457758 -72142025 + B2_Mm1t SINE B2 1 152 -41 7 1252 518 82 10 40 chr3 87457758 87457859 -72141924 + (TAGA)n Simple_repeat Simple_repeat 4 101 0 7 1252 1158 92 34 28 chr3 87457859 87457889 -72141894 + B2_Mm1t SINE B2 153 179 -14 7 1252 401 62 321 9 chr3 87457902 87458014 -72141769 + B2_Mm2 SINE B2 47 193 -2 7 1252 192 71 26 91 chr3 87458614 87458691 -72141092 + (TTTA)n Simple_repeat Simple_repeat 1 72 0 7 1252 727 179 1 15 chr3 87458728 87458876 -72140907 - MTE2b LTR MaLR 0 419 252 7 1252 406 252 137 97 chr3 87458976 87459233 -72140550 - MLT1A LTR MaLR -14 360 83 7 1252 2291 160 94 108 chr3 87459233 87459816 -72139967 - RMER15 LTR ERVL 0 575 1 7 1252 406 252 137 97 chr3 87459816 87459857 -72139926 - MLT1A LTR MaLR -292 82 50 7 1252 215 291 171 23 chr3 87460104 87460280 -72139503 - L2a LINE L2 -2 3424 3223 7 1252 2934 37 13 39 chr3 87461046 87461436 -72138347 + L1Md_F3 LINE L1 6205 6584 0 7 1252 263 222 42 0 chr3 87461436 87461508 -72138275 + L1M2 LINE L1 2409 2483 -4366 7 1252 1052 68 29 0 chr3 87462516 87462697 -72137086 + B2_Mm2 SINE B2 2 192 -1 7 1252 2053 79 128 0 chr3 87463003 87463293 -72136490 + ORR1A2 LTR MaLR 1 327 0 7 1252 203 138 0 0 chr3 87464019 87464048 -72135735 + (TTTC)n Simple_repeat Simple_repeat 1 29 0 7 1252 879 208 71 0 chr3 87464053 87464236 -72135547 - B3A SINE B2 -2 196 1 7 1252 259 260 26 13 chr3 87465448 87465526 -72134257 - ID4 SINE ID -4 79 1 7 1252 473 214 30 20 chr3 87465530 87465630 -72134153 - PB1D9 SINE Alu -6 114 14 7 1252 390 230 0 0 chr3 87465782 87465856 -72133927 - ID4 SINE ID -6 77 4 7 1252 255 311 99 23 chr3 87465866 87466037 -72133746 + MIR SINE MIR 13 196 -66 7 1252 337 344 32 38 chr3 87466062 87466219 -72133564 - MIR SINE MIR -33 229 74 7 1252 180 283 47 66 chr3 87467862 87467968 -72131815 - MIR3 SINE MIR -7 201 98 7 1252 184 355 26 0 chr3 87467987 87468063 -72131720 + MIRb SINE MIR 119 196 -72 7 1252 190 352 42 0 chr3 87468298 87468369 -72131414 - MIR SINE MIR -116 92 19 7 1252 633 214 7 40 chr3 87468672 87468823 -72130960 - B1_Mur1 SINE Alu -3 146 1 7 1252 244 323 154 6 chr3 87468828 87468990 -72130793 - MIRb SINE MIR -79 189 4 7 1252 673 284 49 26 chr3 87469075 87469339 -72130444 + B4A SINE B4 1 270 -22 7 1252 258 105 0 0 chr3 87469342 87469380 -72130403 + (CA)n Simple_repeat Simple_repeat 1 38 0 7 1252 1205 34 0 20 chr3 87469446 87469596 -72130187 - B1_Mus2 SINE Alu 0 147 1 7 1252 903 230 32 50 chr3 87469598 87469654 -72130129 - B3 SINE B2 0 216 164 7 1252 4501 137 31 92 chr3 87469654 87470616 -72129167 - RMER17A2 LTR ERVK 0 906 4 7 1252 576 0 0 0 chr3 87470622 87470686 -72129097 + (TG)n Simple_repeat Simple_repeat 2 65 0 7 1252 903 230 32 50 chr3 87470686 87470842 -72128941 - B3 SINE B2 -59 157 3 7 1252 353 340 28 14 chr3 87470993 87471286 -72128497 - L1M3 LINE L1 -524 5776 5479 7 1252 2046 229 44 44 chr3 87471307 87471805 -72127978 - Lx6 LINE L1 -27 7433 6936 7 1252 5960 173 45 50 chr3 87471809 87471974 -72127809 - Lx6 LINE L1 -657 6803 6678 7 1252 2019 107 62 3 chr3 87471974 87472282 -72127501 + ORR1A3 LTR MaLR 1 326 0 7 1252 5960 173 45 50 chr3 87472282 87472832 -72126951 - Lx6 LINE L1 -783 6677 6103 7 1252 549 0 0 0 chr3 87472832 87472893 -72126890 + (TC)n Simple_repeat Simple_repeat 1 61 0 7 1252 5960 164 65 17 chr3 87472893 87474067 -72125716 - Lx6 LINE L1 -1358 6102 4866 7 1252 1859 148 33 0 chr3 87474064 87474401 -72125382 - Lx6 LINE L1 -2152 3728 3381 7 1252 2173 82 3 0 chr3 87474402 87474693 -72125090 - ORR1A2 LTR MaLR 0 327 36 7 1252 9671 128 65 111 chr3 87474693 87474832 -72124951 - ORR1A2-int LTR MaLR -2 1961 1816 7 1252 1304 106 32 5 chr3 87474832 87475021 -72124762 + B2_Mm2 SINE B2 1 194 -1 7 1252 9671 128 65 111 chr3 87475021 87476938 -72122845 - ORR1A2-int LTR MaLR -148 1815 1 7 1252 2119 97 0 62 chr3 87476942 87477282 -72122501 - ORR1A2 LTR MaLR -8 319 1 7 1252 884 133 62 21 chr3 87477282 87477474 -72122309 - Lx6 LINE L1 -2496 3384 3185 7 1252 1935 134 96 0 chr3 87477473 87477808 -72121975 + L1_Mur3 LINE L1 2511 2877 -3003 7 1252 729 258 76 60 chr3 87477806 87478120 -72121663 - Lx6 LINE L1 -7124 604 286 7 1252 444 202 30 53 chr3 87478350 87478481 -72121302 - MER33 DNA MER1_type -28 296 169 7 1252 708 179 41 0 chr3 87478483 87478606 -72121177 + B1_Mus1 SINE Alu 10 137 -11 7 1252 345 264 57 24 chr3 87478611 87478735 -72121048 - MER33 DNA MER1_type -165 159 32 7 1252 244 264 14 0 chr3 87479074 87479146 -72120637 - MIRc SINE MIR -31 237 165 7 1252 1041 31 0 0 chr3 87479569 87479699 -72120084 - B1_Mus1 SINE Alu -1 147 18 7 1252 388 188 19 111 chr3 87479603 87479711 -72120072 - MT2B LTR ERVL -337 264 167 7 1252 809 146 73 0 chr3 87479908 87480045 -72119738 + B1_Mur2 SINE Alu 3 149 0 7 1252 201 39 0 0 chr3 87480497 87480523 -72119260 + (CTG)n Simple_repeat Simple_repeat 1 26 0 7 1252 192 292 15 30 chr3 87480529 87480596 -72119187 - MIRc SINE MIR -144 124 59 7 1252 568 283 128 25 chr3 87480677 87480880 -72118903 - B4A SINE B4 -1 291 68 7 1252 1386 99 0 5 chr3 87481248 87481440 -72118343 - B2_Mm2 SINE B2 -3 192 2 7 1252 324 224 0 134 chr3 87481641 87481775 -72118008 + B3A SINE B2 77 192 -6 7 1252 566 212 98 0 chr3 87481964 87482096 -72117687 + B1F SINE Alu 5 149 0 7 1252 237 277 0 46 chr3 87482102 87482189 -72117594 + L1MC4 LINE L1 7480 7562 -480 7 1252 1195 226 30 60 chr3 87482206 87482507 -72117276 + B4A SINE B4 1 292 0 7 1252 461 125 204 0 chr3 87482578 87482666 -72117117 - URR1A DNA MER1_type -120 106 1 7 1252 1119 76 0 0 chr3 87483296 87483440 -72116343 - B1_Mus1 SINE Alu 0 148 5 7 1252 27 0 0 0 chr3 87483497 87483524 -72116259 + AT_rich Low_complexity Low_complexity 1 27 0 7 1252 1162 88 0 0 chr3 87484014 87484161 -72115622 - B1_Mm SINE Alu 0 147 1 7 1252 279 71 0 0 chr3 87484876 87484918 -72114865 + (TTGG)n Simple_repeat Simple_repeat 2 43 0 7 1252 267 54 0 0 chr3 87485874 87485911 -72113872 + (TGG)n Simple_repeat Simple_repeat 2 38 0 7 1252 360 265 93 22 chr3 87485936 87486075 -72113708 - B1F1 SINE Alu 0 149 1 7 1252 314 318 40 23 chr3 87487629 87487803 -72111980 - MIRb SINE MIR -68 200 24 7 1252 483 247 0 20 chr3 87488803 87488902 -72110881 + B1_Mur2 SINE Alu 1 97 -52 7 1252 680 186 32 76 chr3 87488928 87489085 -72110698 - B3A SINE B2 -48 150 1 7 1252 264 200 118 0 chr3 87489160 87489245 -72110538 - Charlie21a DNA MER1_type -742 471 377 7 1252 1670 26 0 15 chr3 87490356 87490552 -72109231 + B2_Mm1a SINE B2 1 193 0 7 1252 473 209 54 9 chr3 87491361 87491472 -72108311 + PB1D10 SINE Alu 1 116 -1 7 1252 302 181 135 27 chr3 87492945 87493019 -72106764 + ID2 SINE ID 2 83 0 7 1252 396 0 0 0 chr3 87493137 87493181 -72106602 + (TAAA)n Simple_repeat Simple_repeat 4 47 0 7 1252 396 301 21 62 chr3 87493675 87493820 -72105963 + B1_Mur1 SINE Alu 11 149 0 7 1252 691 267 100 41 chr3 87494079 87494348 -72105435 + L1MB7 LINE L1 4762 5046 -1100 7 1252 293 246 164 0 chr3 87494348 87494458 -72105325 + MER2 DNA MER2_type 70 197 -148 7 1252 757 223 81 29 chr3 87494470 87494743 -72105040 + L1MB7 LINE L1 5023 5309 -837 7 1252 1301 127 24 10 chr3 87494744 87494950 -72104833 + B3 SINE B2 1 209 -7 7 1252 342 123 53 0 chr3 87495031 87495088 -72104695 + B2_Mm2 SINE B2 112 171 -24 7 1252 253 109 18 18 chr3 87495182 87495238 -72104545 + (CAAAA)n Simple_repeat Simple_repeat 1 56 0 7 1252 26 50 0 0 chr3 87495258 87495298 -72104485 + AT_rich Low_complexity Low_complexity 1 40 0 7 1252 559 152 111 0 chr3 87495327 87495426 -72104357 - B1_Mus1 SINE Alu 0 148 39 7 1252 24 0 0 0 chr3 87495426 87495450 -72104333 + AT_rich Low_complexity Low_complexity 1 24 0 7 1252 233 255 19 19 chr3 87495455 87495507 -72104276 - B3A SINE B2 -35 163 112 7 1252 248 196 36 0 chr3 87495493 87495549 -72104234 - B2_Mm2 SINE B2 -137 58 1 7 1252 318 95 330 19 chr3 87495573 87495682 -72104101 - B2_Mm2 SINE B2 -6 189 47 7 1252 1305 96 11 0 chr3 87495746 87495924 -72103859 - B2_Mm1a SINE B2 -12 181 2 7 1252 315 259 81 0 chr3 87495999 87496098 -72103685 + B1F1 SINE Alu 12 115 -2 7 1252 1801 257 84 15 chr3 87496297 87496906 -72102877 + L1MB7 LINE L1 5533 6183 -1 7 1252 745 264 17 11 chr3 87497141 87497321 -72102462 + B3A SINE B2 1 181 -17 7 1252 2451 80 117 32 chr3 87498070 87498445 -72101338 - MTB_Mm LTR MaLR 0 407 1 7 1252 206 241 18 18 chr3 87499260 87499315 -72100468 + CT-rich Low_complexity Low_complexity 1 55 0 7 1252 981 203 24 29 chr3 87500032 87500240 -72099543 + B3 SINE B2 9 215 -1 1 1252 206 250 112 56 chr3 87500709 87500798 -72098985 + MIRb SINE MIR 101 194 -74 2 1252 238 305 92 31 chr3 87502480 87502578 -72097205 + MIRb SINE MIR 102 205 -63 3 1252 195 42 0 0 chr3 87503067 87503091 -72096692 + (A)n Simple_repeat Simple_repeat 1 24 0 4 1252 199 204 220 20 chr3 87503380 87503480 -72096303 + L3 LINE CR1 4226 4345 -144 5 1252 811 129 30 6 chr3 87503619 87503783 -72096000 + CT-rich Low_complexity Low_complexity 3 170 0 6 1252 192 77 0 0 chr3 87503784 87503810 -72095973 + (CA)n Simple_repeat Simple_repeat 1 26 0 7 1252 1169 271 40 17 chr3 87503810 87503938 -72095845 + L1MA4A LINE L1 5495 5622 -681 8 1252 1302 218 255 44 chr3 87503938 87504413 -72095370 - RMER15 LTR ERVL 0 575 1 9 1252 1169 271 40 17 chr3 87504413 87504704 -72095079 + L1MA4A LINE L1 5623 5924 -379 8 1252 781 92 33 16 chr3 87505212 87505334 -72094449 + B1_Mur2 SINE Alu 26 149 0 1 1252 394 111 158 12 chr3 87506807 87506889 -72092894 + PB1D9 SINE Alu 27 120 0 1 1252 25755 127 28 10 chr3 87507376 87513300 -72086483 - Lx LINE L1 -8 6646 623 1 1252 277 297 39 51 chr3 87513379 87513457 -72086326 - MER20 DNA MER1_type -142 77 1 1 1252 902 161 195 0 chr3 87514028 87514202 -72085581 + B3 SINE B2 2 209 -7 1 1252 1095 208 63 0 chr3 87514301 87514508 -72085275 + URR1B DNA MER1_type 1 220 -5 1 1252 220 137 19 19 chr3 87515941 87515993 -72083790 + GA-rich Low_complexity Low_complexity 1 52 0 1 1252 182 118 29 0 chr3 87515988 87516022 -72083761 + (GAAAA)n Simple_repeat Simple_repeat 4 38 0 1 1252 865 112 112 0 chr3 87516155 87516289 -72083494 + B1_Mur2 SINE Alu 1 149 0 1 1252 527 239 8 41 chr3 87516568 87516690 -72083093 + RSINE1 SINE B4 44 161 -4 1 1252 282 125 0 0 chr3 87516844 87516892 -72082891 + (TCC)n Simple_repeat Simple_repeat 2 49 0 2 1252 508 257 121 60 chr3 87517669 87517868 -72081915 - B3 SINE B2 -5 211 1 2 1252 243 377 115 30 chr3 87518163 87518502 -72081281 - L2a LINE L2 -121 3305 2938 2 1252 345 355 195 18 chr3 87518636 87518974 -72080809 - L2a LINE L2 -671 2748 2351 2 1252 346 278 115 53 chr3 87518974 87519183 -72080600 + ID_B1 SINE B4 1 222 -2 2 1252 325 264 28 0 chr3 87519187 87519259 -72080524 + ID4_ SINE ID 2 75 -8 2 1252 223 305 63 11 chr3 87519468 87519570 -72080213 + MIR SINE MIR 162 268 0 2 1252 248 325 92 2 chr3 87522522 87522651 -72077132 - ORR1D1 LTR MaLR -5 369 237 2 1252 598 195 25 0 chr3 87523172 87523290 -72076493 + B3 SINE B2 96 216 0 2 1252 451 347 50 55 chr3 87523299 87523500 -72076283 + B4 SINE B4 81 280 -12 2 1252 276 100 0 0 chr3 87523509 87523549 -72076234 + (TC)n Simple_repeat Simple_repeat 1 40 0 2 1252 269 299 39 0 chr3 87523598 87523675 -72076108 + ID4 SINE ID 2 81 -2 3 1252 582 246 121 6 chr3 87523761 87523905 -72075878 + ID_B1 SINE B4 81 240 -52 3 1252 438 20 0 0 chr3 87524346 87524397 -72075386 + (TTA)n Simple_repeat Simple_repeat 1 51 0 3 1252 703 266 34 0 chr3 87524398 87524575 -72075208 - B3A SINE B2 -14 184 2 3 1252 732 277 121 15 chr3 87524734 87524998 -72074785 - B4 SINE B4 0 292 1 3 1252 242 319 20 100 chr3 87526057 87526207 -72073576 - MIR3 SINE MIR -68 140 3 3 1252 595 154 21 45 chr3 87526744 87526866 -72072917 + PB1D9 SINE Alu 1 118 -2 3 1252 576 221 10 0 chr3 87527021 87527125 -72072658 + PB1D7 SINE Alu 9 113 -7 3 1252 387 266 209 8 chr3 87527125 87527145 -72072638 + B4A SINE B4 94 243 -49 3 1252 1064 115 16 49 chr3 87527557 87527740 -72072043 - B2_Mm2 SINE B2 -14 181 5 3 1252 1143 54 0 45 chr3 87527770 87527924 -72071859 + B1_Mm SINE Alu 1 147 0 4 1252 2321 127 88 11 chr3 87530508 87530881 -72068902 - MTC LTR MaLR -5 416 15 4 1252 22 0 0 0 chr3 87531195 87531217 -72068566 + GC_rich Low_complexity Low_complexity 1 22 0 4 1252 212 304 0 14 chr3 87538289 87538359 -72061424 + CT-rich Low_complexity Low_complexity 2 70 0 4 1252 214 346 35 47 chr3 87540036 87540059 -72059724 + B4A SINE B4 67 88 -204 4 1252 388 235 165 17 chr3 87540059 87540175 -72059608 + B1_Mur1 SINE Alu 2 118 -2 4 1252 984 177 80 0 chr3 87540390 87540565 -72059218 - B3 SINE B2 -27 189 1 4 1252 489 161 69 0 chr3 87540770 87540857 -72058926 + RSINE1 SINE B4 40 132 -33 4 1252 223 85 43 0 chr3 87541820 87541867 -72057916 + (TA)n Simple_repeat Simple_repeat 1 49 0 4 1252 189 0 0 0 chr3 87543191 87543212 -72056571 + (G)n Simple_repeat Simple_repeat 1 21 0 4 1252 226 183 161 73 chr3 87543369 87543493 -72056290 - LTR81C LTR ERV1? -851 302 168 5 1252 195 42 0 0 chr3 87543597 87543621 -72056162 + (CCCCAG)n Simple_repeat Simple_repeat 6 29 0 5 1252 429 253 72 89 chr3 87543924 87544126 -72055657 - L2c LINE L2 0 3387 3172 5 1252 366 282 39 0 chr3 87546000 87546078 -72053705 - ID4 SINE ID -1 82 2 5 1252 309 203 43 0 chr3 87546078 87546147 -72053636 - PB1D7 SINE Alu -1 119 48 5 1252 339 291 134 45 chr3 87546174 87546397 -72053386 - MIR SINE MIR -6 256 14 5 1252 261 343 29 29 chr3 87547452 87547554 -72052229 + MLT1F2 LTR MaLR 1 102 -458 5 1252 514 126 156 10 chr3 87547607 87547703 -72052080 - B1_Mus2 SINE Alu -21 126 17 5 1252 343 266 528 28 chr3 87547714 87547951 -72051832 + MLT1F2 LTR MaLR 95 450 -110 5 1252 441 0 0 0 chr3 87547995 87548044 -72051739 + (TTGG)n Simple_repeat Simple_repeat 2 50 0 5 1252 432 0 0 0 chr3 87548660 87548708 -72051075 + (TG)n Simple_repeat Simple_repeat 2 49 0 5 1252 807 130 27 68 chr3 87548731 87548879 -72050904 - B1_Mus1 SINE Alu -6 142 1 6 1252 289 170 75 0 chr3 87551451 87551504 -72048279 - B1F1 SINE Alu -77 72 16 6 1252 252 223 34 69 chr3 87551728 87551822 -72047961 + MLT1K LTR MaLR 477 595 0 6 1252 299 289 144 0 chr3 87552065 87552155 -72047628 + B1_Mus2 SINE Alu 5 107 -40 6 1252 198 161 0 0 chr3 87553032 87553063 -72046720 - L2c LINE L2 -16 3371 3341 6 1252 575 161 16 33 chr3 87553188 87553310 -72046473 + PB1D9 SINE Alu 1 120 0 6 1252 637 143 9 18 chr3 87554442 87554679 -72045104 + (TCTCTG)n Simple_repeat Simple_repeat 1 234 0 6 1252 409 139 0 34 chr3 87554692 87554811 -72044972 + (TCTCTG)n Simple_repeat Simple_repeat 2 116 0 6 1253 215 266 48 48 chr3 87556993 87557011 -72042772 - PB1D10 SINE Alu -33 84 69 6 1253 285 51 0 0 chr3 87557011 87557050 -72042733 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 6 1253 248 164 24 71 chr3 87557050 87557114 -72042669 - B1F2 SINE Alu -49 68 2 6 1253 180 0 0 0 chr3 87557181 87557201 -72042582 + (A)n Simple_repeat Simple_repeat 1 20 0 6 1253 1147 118 0 0 chr3 87559263 87559432 -72040351 + B2_Mm2 SINE B2 1 169 -26 7 1253 294 29 0 0 chr3 87559436 87559471 -72040312 + (GA)n Simple_repeat Simple_repeat 1 35 0 7 1253 260 286 0 143 chr3 87559479 87559577 -72040206 + PB1D10 SINE Alu 24 107 -10 7 1253 405 0 0 0 chr3 87559580 87559625 -72040158 + (CAAAA)n Simple_repeat Simple_repeat 3 47 0 7 1253 444 19 0 0 chr3 87561277 87561330 -72038453 + (TC)n Simple_repeat Simple_repeat 1 53 0 7 1253 591 15 0 0 chr3 87561570 87561638 -72038145 + (TC)n Simple_repeat Simple_repeat 2 69 0 7 1253 250 43 0 146 chr3 87562609 87562691 -72037092 + G-rich Low_complexity Low_complexity 5 74 0 7 1253 504 212 0 0 chr3 87563728 87563860 -72035923 + (CA)n Simple_repeat Simple_repeat 2 133 0 7 1253 432 0 0 0 chr3 87565129 87565177 -72034606 + (CA)n Simple_repeat Simple_repeat 2 49 0 7 1253 234 307 67 89 chr3 87566126 87566220 -72033563 + MT2B2 LTR ERVL 66 155 -429 7 1253 471 212 10 0 chr3 87566220 87566319 -72033464 + B1_Mur4 SINE Alu 1 100 -50 8 1253 609 110 0 0 chr3 87566335 87566426 -72033357 + (CACG)n Simple_repeat Simple_repeat 1 91 0 8 1253 213 121 0 0 chr3 87566985 87567018 -72032765 + (C)n Simple_repeat Simple_repeat 1 33 0 8 1253 249 151 0 0 chr3 87567833 87567886 -72031897 + (CGGGG)n Simple_repeat Simple_repeat 1 53 0 8 1253 197 338 27 40 chr3 87568389 87568463 -72031320 + MIR SINE MIR 145 217 -45 8 1253 256 209 75 0 chr3 87568817 87568884 -72030899 + MIRc SINE MIR 58 129 -139 8 1253 213 346 119 25 chr3 87569449 87569523 -72030260 + B4 SINE B4 5 93 -199 8 1253 410 242 27 4 chr3 87569523 87569635 -72030148 + B1F SINE Alu 2 110 -7 8 1253 1450 59 37 21 chr3 87570508 87570698 -72029085 + B2_Mm2 SINE B2 2 194 -1 8 1253 243 78 39 19 chr3 87572545 87572597 -72027186 + (TC)n Simple_repeat Simple_repeat 2 54 0 8 1253 189 0 0 0 chr3 87572692 87572713 -72027070 + (CA)n Simple_repeat Simple_repeat 2 22 0 9 1253 565 233 20 0 chr3 87573372 87573522 -72026261 - L1MB4 LINE L1 -3 6177 6025 9 1253 556 227 25 80 chr3 87573685 87573848 -72025935 + RSINE1 SINE B4 2 155 -10 9 1253 318 257 65 22 chr3 87573941 87574080 -72025703 - L1ME1 LINE L1 -178 6001 5857 9 1253 29 28 0 0 chr3 87574224 87574260 -72025523 + AT_rich Low_complexity Low_complexity 1 36 0 9 1253 180 333 29 14 chr3 87574452 87574522 -72025261 - MIR3 SINE MIR -37 171 101 9 1253 255 273 91 0 chr3 87574657 87574756 -72025027 + Lx8 LINE L1 6746 6853 -620 9 1253 219 167 0 0 chr3 87574757 87574799 -72024984 + CT-rich Low_complexity Low_complexity 3 44 0 9 1253 377 285 81 0 chr3 87574937 87575109 -72024674 + Lx8 LINE L1 6840 7025 -448 9 1253 232 390 50 0 chr3 87575164 87575264 -72024519 + RMER15 LTR ERVL 366 470 -105 9 1253 221 119 0 23 chr3 87575323 87575366 -72024417 + (GGGA)n Simple_repeat Simple_repeat 3 44 0 9 1253 212 252 58 8 chr3 87575395 87575515 -72024268 + (TA)n Simple_repeat Simple_repeat 2 127 0 1 1253 246 235 9 191 chr3 87575585 87575690 -72024093 + RSINE1 SINE B4 79 164 -1 1 1253 438 301 190 16 chr3 87575742 87575995 -72023788 - L2 LINE L2 -463 2956 2660 1 1253 313 364 0 16 chr3 87577103 87577226 -72022557 + (CATG)n Simple_repeat Simple_repeat 4 124 0 1 1253 462 18 0 0 chr3 87577233 87577288 -72022495 + (CA)n Simple_repeat Simple_repeat 1 55 0 1 1253 922 158 0 33 chr3 87578812 87578963 -72020820 + B1_Mus2 SINE Alu 2 147 0 1 1253 312 94 0 0 chr3 87578966 87579019 -72020764 + (GA)n Simple_repeat Simple_repeat 2 54 0 1 1253 274 284 107 10 chr3 87579065 87579168 -72020615 - MIR SINE MIR -51 211 99 1 1253 226 231 19 0 chr3 87581611 87581663 -72018120 - ID4 SINE ID -27 56 4 1 1253 411 275 29 37 chr3 87581674 87581810 -72017973 - B1F1 SINE Alu -5 144 10 1 1253 231 36 0 0 chr3 87583506 87583534 -72016249 + (TGGGGG)n Simple_repeat Simple_repeat 2 29 0 1 1253 185 283 0 0 chr3 87584825 87584871 -72014912 - L2b LINE L2 -215 3160 3115 1 1253 315 0 0 0 chr3 87586000 87586035 -72013748 + (CA)n Simple_repeat Simple_repeat 1 35 0 1 1253 202 154 26 0 chr3 87588196 87588235 -72011548 + (CAAA)n Simple_repeat Simple_repeat 2 41 0 1 1253 918 206 33 22 chr3 87588542 87588726 -72011057 - B3 SINE B2 -6 210 25 1 1253 855 145 64 21 chr3 87588893 87589034 -72010749 - B1_Mm SINE Alu 0 147 1 1 1253 398 278 46 0 chr3 87589072 87589180 -72010603 + PB1D10 SINE Alu 3 115 -2 1 1253 647 228 16 0 chr3 87590696 87590823 -72008960 - B1_Mur1 SINE Alu -12 137 9 1 1253 277 331 30 75 chr3 87591547 87591681 -72008102 + B4A SINE B4 39 166 -126 1 1253 185 259 36 36 chr3 87591879 87591935 -72007848 + L2 LINE L2 530 585 -2834 1 1253 222 317 73 46 chr3 87594288 87594397 -72005386 + MIRc SINE MIR 50 161 -107 1 1253 238 315 121 15 chr3 87594464 87594596 -72005187 + YREP_Mm Unknown Unknown 151 296 -1516 1 1253 361 286 0 103 chr3 87594490 87594607 -72005176 - PB1D10 SINE Alu -3 114 10 1 1253 926 241 11 0 chr3 87594507 87594694 -72005089 - ID_B1 SINE B4 -34 190 2 1 1253 216 0 0 0 chr3 87597196 87597220 -72002563 + (CAGA)n Simple_repeat Simple_repeat 2 25 0 1 1253 1116 50 57 0 chr3 87600146 87600286 -71999497 + B1_Mus1 SINE Alu 1 148 0 1 1253 800 191 0 0 chr3 87601508 87601649 -71998134 - B1_Mus1 SINE Alu 0 148 8 1 1253 288 0 0 0 chr3 87603012 87603044 -71996739 + (TG)n Simple_repeat Simple_repeat 1 32 0 1 1253 379 309 176 6 chr3 87603756 87603938 -71995845 - L2a LINE L2 -2 3424 3212 1 1253 288 176 88 0 chr3 87603945 87604013 -71995770 + PB1D10 SINE Alu 36 109 -8 1 1253 214 261 0 0 chr3 87604019 87604065 -71995718 + ID2 SINE ID 2 47 -36 1 1253 198 0 0 0 chr3 87604897 87604919 -71994864 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 1 1253 447 288 0 31 chr3 87604919 87605041 -71994742 - ID_B1 SINE B4 -11 213 94 1 1253 198 330 33 43 chr3 87605047 87605139 -71994644 - MIR SINE MIR -74 188 98 1 1253 359 317 73 101 chr3 87605915 87605936 -71993847 - B4 SINE B4 -50 242 130 1 1253 740 242 0 0 chr3 87605936 87606085 -71993698 - B1_Mur1 SINE Alu 0 149 1 1 1253 269 278 0 0 chr3 87607233 87607305 -71992478 + MIR SINE MIR 74 145 -117 1 1253 204 200 0 0 chr3 87608187 87608222 -71991561 + (CACG)n Simple_repeat Simple_repeat 3 37 0 1 1253 426 151 0 0 chr3 87608499 87608572 -71991211 + CT-rich Low_complexity Low_complexity 2 74 0 1 1253 263 222 56 100 chr3 87608589 87608679 -71991104 - B1F1 SINE Alu -51 98 13 1 1253 432 0 0 0 chr3 87609053 87609101 -71990682 + (TC)n Simple_repeat Simple_repeat 1 48 0 1 1253 604 250 62 0 chr3 87609101 87609229 -71990554 - B1_Mur4 SINE Alu -13 137 2 1 1253 321 286 11 42 chr3 87609233 87609328 -71990455 - PB1D10 SINE Alu -21 96 5 1 1253 677 227 25 38 chr3 87609250 87609410 -71990373 - ID_B1 SINE B4 -64 160 3 1 1253 321 206 14 42 chr3 87609645 87609716 -71990067 + ID4_ SINE ID 12 80 -3 1 1253 208 77 25 25 chr3 87609752 87609792 -71989991 + (TTTG)n Simple_repeat Simple_repeat 1 40 0 1 1253 987 139 14 0 chr3 87609792 87609936 -71989847 - B1_Mus1 SINE Alu 0 148 3 1 1253 467 315 41 7 chr3 87610165 87610312 -71989471 - MER5A DNA MER1_type -37 152 1 1 1253 1170 243 21 32 chr3 87610685 87610970 -71988813 + B4A SINE B4 2 283 -9 1 1253 198 209 0 0 chr3 87611015 87611058 -71988725 + (CA)n Simple_repeat Simple_repeat 1 43 0 1 1253 1170 68 0 13 chr3 87611367 87611516 -71988267 + B1_Mm SINE Alu 1 147 0 1 1253 333 100 0 0 chr3 87611516 87611566 -71988217 + (GA)n Simple_repeat Simple_repeat 1 50 0 1 1253 625 155 29 0 chr3 87611576 87611679 -71988104 + B1_Mur2 SINE Alu 1 106 -43 1 1253 325 274 32 96 chr3 87611683 87611808 -71987975 - Charlie4z DNA MER1_type -47 120 4 1 1253 318 275 26 44 chr3 87611816 87611930 -71987853 + PB1D10 SINE Alu 5 116 -1 1 1253 1125 78 108 0 chr3 87612018 87612185 -71987598 - B2_Mm2 SINE B2 -9 186 2 1 1253 201 197 0 0 chr3 87613080 87613141 -71986642 + GA-rich Low_complexity Low_complexity 2 62 0 1 1253 536 294 67 43 chr3 87615763 87615973 -71983810 + B4A SINE B4 3 217 -75 1 1253 356 135 14 0 chr3 87616018 87616092 -71983691 + (CCA)n Simple_repeat Simple_repeat 1 75 0 1 1253 762 242 65 16 chr3 87616141 87616326 -71983457 + B3 SINE B2 19 212 -4 1 1253 617 267 54 49 chr3 87616335 87616540 -71983243 + B4A SINE B4 26 231 -61 1 1253 468 0 0 0 chr3 87616540 87616592 -71983191 + (CA)n Simple_repeat Simple_repeat 1 52 0 1 1253 800 146 27 81 chr3 87618779 87618928 -71980855 - B1_Mur4 SINE Alu -9 141 1 1 1253 916 243 11 0 chr3 87621954 87622139 -71977644 + B3A SINE B2 1 187 -11 1 1253 320 292 10 68 chr3 87623949 87624052 -71975731 - MIRc SINE MIR -124 144 48 1 1253 1052 54 77 0 chr3 87624053 87624183 -71975600 + B1_Mus2 SINE Alu 2 141 -6 1 1253 707 173 0 7 chr3 87624183 87624323 -71975460 + GA-rich Low_complexity Low_complexity 1 139 0 1 1253 413 41 0 0 chr3 87624323 87624372 -71975411 + (GGA)n Simple_repeat Simple_repeat 2 50 0 1 1253 957 83 0 0 chr3 87624372 87624504 -71975279 + (GAAAA)n Simple_repeat Simple_repeat 5 136 0 1 1253 842 174 146 0 chr3 87625058 87625236 -71974547 + URR1A DNA MER1_type 1 204 -22 1 1253 1302 97 0 6 chr3 87625327 87625504 -71974279 - B2_Mm2 SINE B2 -18 177 2 1 1253 907 141 189 43 chr3 87625947 87626132 -71973651 + B3 SINE B2 3 214 -2 1 1253 505 207 125 33 chr3 87626271 87626391 -71973392 - B1F1 SINE Alu -1 148 18 1 1253 1174 216 89 64 chr3 87626388 87626818 -71972965 + MT2A LTR ERVL 5 462 -71 1 1253 234 0 0 0 chr3 87626938 87626964 -71972819 + (TTTA)n Simple_repeat Simple_repeat 1 26 0 1 1253 1094 73 0 56 chr3 87626964 87627124 -71972659 - B2_Mm2 SINE B2 -43 152 2 1 1253 202 167 23 45 chr3 87627335 87627379 -71972404 - MIR SINE MIR -60 148 106 1 1253 472 168 28 0 chr3 87628218 87628241 -71971542 + polypyrimidine Low_complexity Low_complexity 90 112 0 1 1253 1066 100 18 0 chr3 87628241 87628411 -71971372 + (CCCCCT)n Simple_repeat Simple_repeat 4 176 0 1 1253 472 168 28 0 chr3 87628411 87628494 -71971289 + CT-rich Low_complexity Low_complexity 4 89 0 1 1253 360 0 0 0 chr3 87628501 87628541 -71971242 + (CA)n Simple_repeat Simple_repeat 1 40 0 1 1253 326 315 150 23 chr3 87628883 87629149 -71970634 + L1MC4 LINE L1 7238 7537 -505 1 1253 669 241 225 17 chr3 87629414 87629654 -71970129 + B4A SINE B4 2 291 -1 1 1253 234 0 0 0 chr3 87629676 87629702 -71970081 + (A)n Simple_repeat Simple_repeat 1 26 0 1 1253 865 139 137 52 chr3 87629706 87629918 -71969865 + RMER19C LTR ERVK 1 230 -381 1 1253 2564 193 104 58 chr3 87629903 87630689 -71969094 + RMER19C LTR ERVK 40 868 -34 1 1253 873 179 7 0 chr3 87630694 87630834 -71968949 + B1_Mur1 SINE Alu 7 147 -2 1 1253 875 236 60 0 chr3 87631104 87631303 -71968480 + B3 SINE B2 1 211 -5 1 1253 599 214 38 8 chr3 87631645 87631777 -71968006 + RSINE1 SINE B4 8 143 -22 1 1253 381 305 38 87 chr3 87631940 87632123 -71967660 + B4A SINE B4 1 174 -118 1 1253 25 0 0 0 chr3 87632232 87632257 -71967526 + AT_rich Low_complexity Low_complexity 1 25 0 1 1253 431 268 99 50 chr3 87632369 87632530 -71967253 - B3A SINE B2 -25 173 5 1 1253 495 265 136 41 chr3 87632528 87632697 -71967086 - MTEb LTR MaLR -113 266 82 1 1253 291 219 139 28 chr3 87633052 87633160 -71966623 - RLTR20A LTR ERVK -350 191 72 1 1253 24 0 0 0 chr3 87633292 87633316 -71966467 + AT_rich Low_complexity Low_complexity 1 24 0 1 1253 1172 37 0 0 chr3 87633325 87633459 -71966324 + B1_Mus2 SINE Alu 2 135 -12 1 1253 266 0 29 0 chr3 87633461 87633495 -71966288 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1 1253 345 100 0 0 chr3 87633597 87633647 -71966136 + (T)n Simple_repeat Simple_repeat 1 50 0 1 1253 307 27 0 0 chr3 87633680 87633717 -71966066 - B1_Mus2 SINE Alu -9 138 102 1 1253 368 150 0 0 chr3 87633912 87633972 -71965811 + PB1D9 SINE Alu 61 120 0 1 1253 193 114 0 103 chr3 87634283 87634322 -71965461 - L3b LINE CR1 -264 218 184 1 1253 180 250 114 0 chr3 87634366 87634410 -71965373 - MIR SINE MIR -110 152 104 2 1253 218 105 26 26 chr3 87634624 87634663 -71965120 + PB1D7 SINE Alu 19 57 -63 2 1253 515 190 80 32 chr3 87634655 87634780 -71965003 + MT2A LTR ERVL 167 297 -236 2 1253 1089 175 85 47 chr3 87635132 87635404 -71964379 + MT2A LTR ERVL 229 533 0 2 1253 2994 254 73 28 chr3 87635410 87636246 -71963537 + MERVL_2A-int LTR ERVL 8 987 -4774 2 1253 2663 185 216 0 chr3 87636246 87636852 -71962931 + RMER19A LTR ERVK 1 737 0 2 1253 2994 230 71 16 chr3 87636852 87637010 -71962773 + MERVL_2A-int LTR ERVL 988 1166 -4595 2 1253 225 0 0 0 chr3 87637018 87637043 -71962740 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 2 1253 1205 98 0 0 chr3 87637052 87637206 -71962577 + B2_Mm2 SINE B2 2 155 -40 2 1253 270 0 0 0 chr3 87637206 87637236 -71962547 + (CAATA)n Simple_repeat Simple_repeat 3 32 0 2 1253 2257 218 47 10 chr3 87637253 87637759 -71962024 + MERVL_2A-int LTR ERVL 1189 1713 -4048 2 1253 643 226 170 83 chr3 87637759 87637809 -71961974 - MT2B LTR ERVL -1 600 549 2 1253 270 0 0 0 chr3 87637809 87637839 -71961944 + (TG)n Simple_repeat Simple_repeat 1 30 0 2 1253 285 29 0 0 chr3 87637839 87637873 -71961910 + (GA)n Simple_repeat Simple_repeat 1 34 0 2 1253 643 226 170 83 chr3 87637873 87638110 -71961673 - MT2B LTR ERVL -53 548 288 2 1253 279 0 0 0 chr3 87638114 87638145 -71961638 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 2 1253 552 122 44 0 chr3 87638185 87638275 -71961508 - RLTR14 LTR ERV1 -244 138 45 2 1253 853 96 8 8 chr3 87638277 87638403 -71961380 + RLTR12A LTR ERVK 2 127 -441 2 1253 1331 102 21 5 chr3 87638407 87638595 -71961188 + B2_Mm2 SINE B2 1 191 -4 2 1253 916 186 0 49 chr3 87638607 87638782 -71961001 + B2_Mm2 SINE B2 2 169 -26 2 1253 3626 21 97 5 chr3 87638782 87639217 -71960566 - IAPLTR2_Mm LTR ERVK 0 475 1 2 1253 916 186 0 49 chr3 87639217 87639245 -71960538 + B2_Mm2 SINE B2 170 195 0 2 1253 1324 90 11 0 chr3 87639247 87639424 -71960359 + B2_Mm1t SINE B2 1 179 -14 2 1253 305 142 26 35 chr3 87639471 87639536 -71960247 + B2_Mm2 SINE B2 47 114 -102 2 1253 237 79 0 0 chr3 87639571 87639609 -71960174 + B1_Mur4 SINE Alu 113 150 0 2 1253 728 174 83 51 chr3 87639610 87639767 -71960016 + RLTR12A LTR ERVK 117 278 -290 2 1253 3118 57 10 0 chr3 87639772 87640156 -71959627 + RLTR10 LTR ERVK 1 388 -2 2 1253 2677 151 53 60 chr3 87640158 87640708 -71959075 + MERVL_2A-int LTR ERVL 3261 3806 -1955 2 1253 5144 139 27 1 chr3 87640707 87641511 -71958272 + MERVL_2A-int LTR ERVL 4055 4879 -882 2 1253 233 233 0 0 chr3 87641615 87641658 -71958125 + MT2B LTR ERVL 62 104 -497 2 1253 243 61 0 0 chr3 87641694 87641727 -71958056 + (TTG)n Simple_repeat Simple_repeat 1 33 0 2 1253 428 170 138 35 chr3 87641734 87641850 -71957933 - RLTR15 LTR ERVK -229 130 3 2 1253 575 278 132 6 chr3 87641853 87642027 -71957756 - MTE-int LTR MaLR -1231 349 154 2 1253 225 221 99 78 chr3 87642026 87642168 -71957615 + RLTR15 LTR ERVK 215 359 0 2 1253 384 316 67 39 chr3 87642168 87642326 -71957457 + MTE-int LTR MaLR 337 499 -1081 2 1253 657 221 48 41 chr3 87642390 87642536 -71957247 + B1_Mur1 SINE Alu 2 148 -1 2 1253 1808 287 170 26 chr3 87642552 87643347 -71956436 + MTE-int LTR MaLR 578 1486 -94 2 1253 748 281 153 42 chr3 87643407 87643715 -71956068 + MTEa LTR MaLR 9 350 -29 2 1253 584 157 30 35 chr3 87644410 87644532 -71955251 - B1_Mur2 SINE Alu -7 142 3 2 1253 726 234 8 110 chr3 87644686 87644931 -71954852 - ID_B1 SINE B4 -4 220 1 2 1253 862 128 7 7 chr3 87645112 87645262 -71954521 + (TCTCCC)n Simple_repeat Simple_repeat 3 152 0 2 1253 1083 85 0 21 chr3 87645266 87645410 -71954373 - B1_Mus2 SINE Alu -6 141 1 2 1253 28 0 0 0 chr3 87645419 87645447 -71954336 + AT_rich Low_complexity Low_complexity 1 28 0 2 1253 703 205 0 0 chr3 87645543 87645660 -71954123 - Lx7 LINE L1 -1020 6676 6560 2 1253 231 0 50 25 chr3 87645780 87645820 -71953963 + (CAAAAA)n Simple_repeat Simple_repeat 2 42 0 2 1253 1620 21 16 0 chr3 87645830 87646016 -71953767 + B2_Mm1a SINE B2 2 190 -3 2 1253 1894 242 77 37 chr3 87646240 87646861 -71952922 - Lx7 LINE L1 -282 7414 6769 2 1253 790 176 14 29 chr3 87646911 87646926 -71952857 - B1_Mur3 SINE Alu 0 149 138 2 1253 1032 79 43 0 chr3 87646926 87647066 -71952717 - B1_Mus2 SINE Alu 0 147 2 2 1253 790 176 14 29 chr3 87647066 87647190 -71952593 - B1_Mur3 SINE Alu -12 137 12 2 1253 366 292 7 103 chr3 87647089 87647234 -71952549 - MT2B LTR ERVL -337 264 134 2 1253 1663 257 11 59 chr3 87647234 87647674 -71952109 - Lx7 LINE L1 -946 6750 6332 2 1253 2502 83 3 21 chr3 87647674 87648006 -71951777 - ORR1A3 LTR MaLR 0 326 1 2 1253 1663 257 11 59 chr3 87648006 87648020 -71951763 - Lx7 LINE L1 -1365 6331 6318 2 1253 292 262 60 86 chr3 87648024 87648141 -71951642 - L1M2 LINE L1 -583 5708 5595 2 1253 965 258 63 21 chr3 87648174 87648545 -71951238 - L1M2 LINE L1 -690 5610 5166 2 1253 189 0 0 0 chr3 87648545 87648566 -71951217 + (TTTTG)n Simple_repeat Simple_repeat 5 25 0 2 1253 223 242 136 0 chr3 87648575 87648641 -71951142 - B1_Mur2 SINE Alu -57 92 18 2 1253 756 313 75 109 chr3 87648641 87648952 -71950831 - L1M2 LINE L1 -963 5171 4845 2 1253 3188 170 140 9 chr3 87648952 87649604 -71950179 + RMER19A LTR ERVK 1 737 0 2 1253 756 325 57 25 chr3 87649604 87649777 -71950006 - L1M2 LINE L1 -1267 4876 4695 2 1253 603 202 7 58 chr3 87649789 87649926 -71949857 - B1_Mus2 SINE Alu -1 146 17 2 1253 225 304 0 0 chr3 87649967 87650023 -71949760 + LTR16D1 LTR ERVL 236 291 -384 2 1253 707 268 122 31 chr3 87650311 87650565 -71949218 + B4A SINE B4 4 280 -12 2 1253 184 259 112 45 chr3 87652099 87652188 -71947595 + L3 LINE CR1 4233 4327 -162 2 1253 199 316 33 137 chr3 87652381 87652564 -71947219 + L2 LINE L2 19 182 -3237 2 1253 979 49 331 0 chr3 87652571 87652713 -71947070 - B2_Mm2 SINE B2 -4 191 3 2 1253 465 347 92 25 chr3 87653828 87654321 -71945462 - L2a LINE L2 -55 3371 2836 2 1253 185 211 19 0 chr3 87656878 87656930 -71942853 + (CACG)n Simple_repeat Simple_repeat 3 55 0 2 1253 284 338 0 0 chr3 87657095 87657163 -71942620 - ID4_ SINE ID -6 77 10 2 1253 208 286 0 0 chr3 87657643 87657692 -71942091 + G-rich Low_complexity Low_complexity 2 50 0 2 1253 556 309 12 0 chr3 87658067 87658232 -71941551 + MER117 DNA MER1_type 1 167 -30 2 1253 235 282 42 0 chr3 87658251 87658322 -71941461 - MIR3 SINE MIR -48 160 87 2 1253 983 150 5 0 chr3 87658549 87658764 -71941019 + (CA)n Simple_repeat Simple_repeat 1 216 0 2 1253 782 103 0 0 chr3 87659667 87659774 -71940009 + ORR1A3 LTR MaLR 212 318 -8 2 1253 530 195 51 109 chr3 87659780 87659918 -71939865 + MTE2b LTR MaLR 250 379 0 2 1253 430 233 67 10 chr3 87660651 87660755 -71939028 - PB1D9 SINE Alu -9 111 2 2 1253 332 299 91 20 chr3 87660767 87660866 -71938917 - PB1D7 SINE Alu -8 112 7 2 1253 753 215 71 30 chr3 87660962 87661159 -71938624 + B3 SINE B2 1 205 -11 2 1253 421 172 65 54 chr3 87661191 87661283 -71938500 - B3 SINE B2 -121 95 3 2 1253 419 224 178 17 chr3 87661316 87661434 -71938349 + B1F SINE Alu 5 141 -8 2 1253 343 212 318 0 chr3 87662527 87662612 -71937171 - PB1D10 SINE Alu -1 116 5 2 1253 189 0 0 0 chr3 87662875 87662896 -71936887 + (A)n Simple_repeat Simple_repeat 1 21 0 2 1253 443 311 13 69 chr3 87663446 87663605 -71936178 + RSINE1 SINE B4 16 165 0 2 1253 476 257 90 71 chr3 87663643 87663798 -71935985 + ID_B1 SINE B4 9 166 -58 2 1253 294 300 0 39 chr3 87663730 87663834 -71935949 + PB1D10 SINE Alu 18 117 0 2 1253 486 369 19 47 chr3 87665224 87665480 -71934303 - MamSINE1 SINE tRNA -22 268 20 2 1253 312 191 8 0 chr3 87666475 87666536 -71933247 - PB1D10 SINE Alu -40 87 24 2 1253 1204 112 0 6 chr3 87666555 87666725 -71933058 + B2_Mm2 SINE B2 1 169 -26 2 1253 600 53 0 0 chr3 87666726 87666802 -71932981 + (GAAA)n Simple_repeat Simple_repeat 1 76 0 2 1253 1109 110 0 6 chr3 87666802 87666975 -71932808 + (GGGA)n Simple_repeat Simple_repeat 3 174 0 2 1253 405 0 0 0 chr3 87666975 87667020 -71932763 + (GA)n Simple_repeat Simple_repeat 2 46 0 2 1253 1058 69 0 46 chr3 87667027 87667178 -71932605 + B1_Mus1 SINE Alu 5 148 0 2 1253 733 140 92 35 chr3 87667199 87667340 -71932443 + B1_Mur4 SINE Alu 2 150 0 2 1253 900 176 119 5 chr3 87667358 87667552 -71932231 + B3 SINE B2 1 216 0 2 1253 327 240 2 3 chr3 87667604 87667672 -71932111 + PB1 SINE Alu 22 88 -61 2 1253 487 271 184 19 chr3 87667992 87668150 -71931633 + ID_B1 SINE B4 7 190 -34 2 1253 247 291 133 19 chr3 87668062 87668167 -71931616 + B1_Mur3 SINE Alu 13 129 -20 2 1253 1199 48 0 7 chr3 87668303 87668450 -71931333 + B1_Mus2 SINE Alu 2 147 0 2 1253 390 91 0 0 chr3 87668450 87668505 -71931278 + (A)n Simple_repeat Simple_repeat 1 55 0 2 1253 329 250 10 59 chr3 87668620 87668722 -71931061 + B1F1 SINE Alu 3 99 -21 2 1253 384 335 165 16 chr3 87669290 87669539 -71930244 + MLT1J LTR MaLR 194 479 -33 2 1253 1930 211 26 55 chr3 87669540 87669961 -71929822 + MTD LTR MaLR 3 411 -8 2 1253 880 120 27 34 chr3 87670039 87670171 -71929612 + B1_Mus2 SINE Alu 2 136 -11 2 1253 189 0 0 0 chr3 87670171 87670192 -71929591 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 2 1253 880 120 27 34 chr3 87670192 87670206 -71929577 + B1_Mus2 SINE Alu 137 147 0 2 1253 349 277 21 0 chr3 87670222 87670316 -71929467 + PB1D10 SINE Alu 22 117 0 2 1253 363 255 239 37 chr3 87670395 87670558 -71929225 + B3A SINE B2 2 197 -1 2 1253 1393 89 16 0 chr3 87670573 87670763 -71929020 + B2_Mm2 SINE B2 3 195 0 2 1253 1316 222 95 29 chr3 87670877 87671224 -71928559 + ORR1D2 LTR MaLR 1 370 0 2 1253 801 216 0 0 chr3 87671894 87672028 -71927755 + B1_Mur2 SINE Alu 2 135 -14 2 1253 333 0 0 0 chr3 87672029 87672066 -71927717 + (TAAA)n Simple_repeat Simple_repeat 3 39 0 2 1253 1362 85 26 0 chr3 87672115 87672304 -71927479 + B2_Mm2 SINE B2 2 195 0 2 1253 1161 62 7 0 chr3 87672659 87672805 -71926978 + B1_Mus2 SINE Alu 1 147 0 2 1253 1385 95 21 0 chr3 87673206 87673396 -71926387 + B2_Mm2 SINE B2 2 195 0 2 1253 752 280 37 5 chr3 87674401 87674591 -71925192 + B3 SINE B2 8 203 -13 3 1253 228 280 0 70 chr3 87674542 87674657 -71925126 - Charlie7 DNA MER1_type -54 2558 2452 3 1253 207 0 0 0 chr3 87675137 87675160 -71924623 + (TTG)n Simple_repeat Simple_repeat 2 24 0 3 1253 1181 36 0 0 chr3 87675173 87675310 -71924473 - B1_Mus1 SINE Alu -10 138 2 3 1253 337 236 196 79 chr3 87675390 87675579 -71924204 + MIR SINE MIR 31 241 -21 3 1253 484 119 142 47 chr3 87675957 87676063 -71923720 + PB1D9 SINE Alu 5 120 0 3 1253 251 114 0 22 chr3 87676067 87676112 -71923671 + (GA)n Simple_repeat Simple_repeat 2 45 0 3 1253 727 106 3 0 chr3 87676263 87676373 -71923410 + B2_Mm2 SINE B2 1 113 -80 3 1253 248 203 186 0 chr3 87676521 87676580 -71923203 + PB1D9 SINE Alu 2 71 -49 3 1253 482 310 15 30 chr3 87676685 87676818 -71922965 + B4A SINE B4 15 145 -147 3 1253 1337 96 32 11 chr3 87676827 87677017 -71922766 + B2_Mm2 SINE B2 2 195 0 3 1253 298 274 27 0 chr3 87677108 87677181 -71922602 + B1F SINE Alu 10 84 -65 3 1253 389 229 53 35 chr3 87677439 87677552 -71922231 - PB1D9 SINE Alu -5 115 1 3 1253 387 0 0 0 chr3 87678016 87678059 -71921724 + (CA)n Simple_repeat Simple_repeat 1 43 0 3 1253 465 220 39 29 chr3 87678228 87678331 -71921452 - PB1D7 SINE Alu -1 119 16 3 1253 731 167 33 53 chr3 87678527 87678679 -71921104 - B1_Mur2 SINE Alu 0 149 1 3 1253 428 308 115 66 chr3 87678884 87679127 -71920656 + B4 SINE B4 1 255 -37 3 1253 224 276 52 0 chr3 87679423 87679481 -71920302 + ID4 SINE ID 4 64 -19 3 1253 423 240 105 24 chr3 87679506 87679630 -71920153 - RCHARR1 DNA MER1_type -2 972 839 3 1253 198 0 0 0 chr3 87679643 87679665 -71920118 + (TTG)n Simple_repeat Simple_repeat 2 23 0 3 1253 772 122 39 39 chr3 87679665 87679793 -71919990 - B1_Mur4 SINE Alu -11 139 12 3 1253 386 280 34 103 chr3 87679793 87679840 -71919943 - ID_B1 SINE B4 -11 213 51 3 1253 243 283 0 0 chr3 87679823 87679874 -71919909 - RCHARR1 DNA MER1_type -285 689 639 3 1253 799 252 56 37 chr3 87679874 87680088 -71919695 + ID_B1 SINE B4 2 219 -5 3 1253 233 185 0 53 chr3 87680107 87680164 -71919619 - RCHARR1 DNA MER1_type -350 624 571 3 1253 1218 48 0 20 chr3 87680207 87680357 -71919426 + B1_Mus1 SINE Alu 2 148 0 3 1253 233 29 0 29 chr3 87680358 87680393 -71919390 + (CAAAAA)n Simple_repeat Simple_repeat 3 36 0 3 1253 1050 125 49 0 chr3 87680415 87680599 -71919184 + B2_Mm2 SINE B2 1 193 -2 3 1253 362 270 32 73 chr3 87680623 87680662 -71919121 + B4A SINE B4 10 84 -208 3 1253 401 291 7 107 chr3 87680662 87680697 -71919086 + B3A SINE B2 49 80 -118 3 1253 621 0 0 0 chr3 87680697 87680766 -71919017 + (GGAA)n Simple_repeat Simple_repeat 2 70 0 3 1253 362 270 32 73 chr3 87680766 87680815 -71918968 + B4A SINE B4 85 127 -165 3 1253 401 291 7 107 chr3 87680815 87680880 -71918903 + B3A SINE B2 81 183 -15 3 1253 192 77 0 0 chr3 87680884 87680910 -71918873 + (CATATA)n Simple_repeat Simple_repeat 3 28 0 3 1253 776 135 36 36 chr3 87680919 87681057 -71918726 + B1_Mur4 SINE Alu 11 148 -2 3 1253 23 0 0 0 chr3 87681061 87681084 -71918699 + AT_rich Low_complexity Low_complexity 1 23 0 3 1253 272 230 53 84 chr3 87681086 87681181 -71918602 + RMER15 LTR ERVL 64 155 -420 3 1253 225 65 0 0 chr3 87681317 87681348 -71918435 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 3 1253 410 187 23 15 chr3 87681389 87681471 -71918312 - B3 SINE B2 -86 130 41 3 1253 527 250 81 0 chr3 87681537 87681661 -71918122 + RMER15 LTR ERVL 442 575 0 3 1253 183 241 112 67 chr3 87682191 87682280 -71917503 - L3 LINE CR1 -269 4220 4128 3 1253 457 197 139 28 chr3 87682286 87682434 -71917349 + ID_B1 SINE B4 53 215 -9 3 1253 411 288 9 9 chr3 87682515 87682620 -71917163 - PB1D9 SINE Alu -6 114 10 3 1253 1253 48 0 0 chr3 87682793 87682939 -71916844 + B1_Mm SINE Alu 2 147 0 3 1253 180 0 0 0 chr3 87682951 87682971 -71916812 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 3 1253 337 202 137 11 chr3 87683066 87683161 -71916622 + PB1D9 SINE Alu 2 108 -12 3 1253 1213 109 0 81 chr3 87683341 87683379 -71916404 + B2_Mm2 SINE B2 2 39 -156 3 1253 1686 26 0 5 chr3 87683379 87683573 -71916210 + B2_Mm1t SINE B2 1 193 0 3 1253 1213 109 0 81 chr3 87683573 87683744 -71916039 + B2_Mm2 SINE B2 40 194 -1 3 1253 1389 176 101 95 chr3 87683858 87684151 -71915632 + ORR1B2 LTR MaLR 1 323 -44 3 1253 1233 48 0 0 chr3 87684151 87684298 -71915485 + B1_Mus1 SINE Alu 2 148 0 3 1253 1389 176 101 95 chr3 87684298 87684361 -71915422 + ORR1B2 LTR MaLR 324 359 -8 3 1253 722 208 191 0 chr3 87684462 87684640 -71915143 + B3 SINE B2 3 214 -2 3 1253 360 203 40 0 chr3 87684642 87684716 -71915067 + B1_Mus2 SINE Alu 10 86 -61 3 1253 734 61 0 39 chr3 87684739 87684841 -71914942 - B1_Mur4 SINE Alu 0 150 53 3 1253 243 0 0 0 chr3 87684890 87684917 -71914866 + (CAGA)n Simple_repeat Simple_repeat 2 28 0 3 1253 516 28 0 27 chr3 87685047 87685120 -71914663 + L1Md_F2 LINE L1 6500 6570 -12 3 1253 357 267 165 8 chr3 87685271 87685392 -71914391 - B1F1 SINE Alu 0 149 10 3 1253 1243 35 0 0 chr3 87685655 87685797 -71913986 + B1_Mus1 SINE Alu 1 142 -6 3 1253 189 0 0 0 chr3 87685799 87685820 -71913963 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 3 1253 287 212 15 15 chr3 87685834 87685901 -71913882 + Lx9 LINE L1 6968 7034 -610 3 1253 1596 47 5 0 chr3 87685903 87686095 -71913688 + B2_Mm1a SINE B2 1 193 0 3 1253 1329 45 1 0 chr3 87686116 87686278 -71913505 + B2_Mm2 SINE B2 1 178 -20 3 1253 219 69 0 0 chr3 87686278 87686307 -71913476 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 3 1253 708 232 104 33 chr3 87686307 87686327 -71913456 + B3A SINE B2 179 196 -2 3 1253 1973 202 184 14 chr3 87686330 87686842 -71912941 + Lx9 LINE L1 7031 7629 -15 3 1253 515 207 8 49 chr3 87687001 87687123 -71912660 + PB1D9 SINE Alu 3 119 -1 3 1254 366 234 56 130 chr3 87687423 87687436 -71912347 + MT2B LTR ERVL 153 275 -322 3 1254 552 212 66 25 chr3 87687436 87687557 -71912226 + B1_Mur3 SINE Alu 1 126 -23 3 1254 219 88 0 0 chr3 87687561 87687595 -71912188 + (CAAA)n Simple_repeat Simple_repeat 1 34 0 3 1254 366 234 56 130 chr3 87687595 87687618 -71912165 + MT2B LTR ERVL 280 302 -299 3 1254 758 258 44 5 chr3 87687751 87687954 -71911829 + ID_B1 SINE B4 2 212 -12 3 1254 307 256 122 0 chr3 87687961 87688051 -71911732 + PB1 SINE Alu 24 124 -3 3 1254 244 294 0 68 chr3 87688062 87688135 -71911648 + ID4_ SINE ID 2 69 -14 3 1254 315 288 50 14 chr3 87688178 87688319 -71911464 + B1F1 SINE Alu 3 148 -1 3 1254 736 190 0 34 chr3 87690070 87690217 -71909566 + B1_Mur4 SINE Alu 9 150 0 3 1254 270 0 0 0 chr3 87690217 87690247 -71909536 + (A)n Simple_repeat Simple_repeat 1 30 0 3 1254 1097 60 33 87 chr3 87691110 87691123 -71908660 - B2_Mm2 SINE B2 -15 180 168 3 1254 1127 56 0 53 chr3 87691123 87691274 -71908509 + B1_Mus1 SINE Alu 1 143 -5 3 1254 1220 62 0 0 chr3 87691283 87691428 -71908355 + B1_Mm SINE Alu 2 146 -1 3 1254 1097 60 33 87 chr3 87691428 87691587 -71908196 - B2_Mm2 SINE B2 -33 162 8 3 1254 1135 72 0 0 chr3 87691745 87691884 -71907899 + B1_Mus1 SINE Alu 4 142 -6 3 1254 654 13 0 0 chr3 87691886 87691961 -71907822 + (GAAA)n Simple_repeat Simple_repeat 2 76 0 3 1254 366 23 0 0 chr3 87691982 87692025 -71907758 + (TC)n Simple_repeat Simple_repeat 1 43 0 3 1254 297 68 0 0 chr3 87692025 87692068 -71907715 + (CA)n Simple_repeat Simple_repeat 1 44 0 3 1254 245 173 57 19 chr3 87692214 87692267 -71907516 - RLTR22_Mur LTR ERVK -204 1644 1590 3 1254 900 217 5 21 chr3 87692340 87692528 -71907255 - RLTR22_Mur LTR ERVK -1039 809 625 3 1254 1901 240 45 34 chr3 87692530 87692722 -71907061 - RMER16 LTR ERVK 0 533 346 3 1254 1208 61 0 13 chr3 87692722 87692871 -71906912 - B1_Mm SINE Alu 0 147 1 3 1254 1901 240 45 34 chr3 87692871 87692889 -71906894 - RMER16 LTR ERVK -188 345 328 3 1254 1180 58 0 0 chr3 87692889 87693028 -71906755 - B1_Mus1 SINE Alu -9 139 1 3 1254 1901 240 45 34 chr3 87693028 87693343 -71906440 - RMER16 LTR ERVK -206 327 3 3 1254 440 253 0 0 chr3 87693343 87693438 -71906345 - RLTR22_Mur LTR ERVK -1220 628 534 3 1254 735 81 0 0 chr3 87693464 87693563 -71906220 - B1_Mus2 SINE Alu -6 141 43 3 1254 240 208 101 25 chr3 87693501 87693580 -71906203 - RLTR25B LTR ERVK -519 509 425 3 1254 216 0 0 0 chr3 87693599 87693623 -71906160 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 3 1254 6420 61 28 19 chr3 87693623 87694470 -71905313 - RLTR13A LTR ERVK 0 855 1 3 1254 1112 136 34 11 chr3 87694471 87694650 -71905133 - B2_Mm2 SINE B2 -11 184 2 3 1254 320 250 38 84 chr3 87694746 87694877 -71904906 + RLTR23 LTR ERV1 306 430 0 3 1254 353 252 100 10 chr3 87694879 87694979 -71904804 + B1F1 SINE Alu 21 129 -20 3 1254 477 0 0 0 chr3 87694993 87695046 -71904737 + (GA)n Simple_repeat Simple_repeat 2 54 0 3 1254 407 326 6 64 chr3 87695051 87695208 -71904575 + RSINE1 SINE B4 1 148 -17 3 1254 1433 55 60 0 chr3 87695261 87695443 -71904340 - B2_Mm1t SINE B2 0 193 1 3 1254 539 260 214 28 chr3 87695761 87695776 -71904007 - ID_B1 SINE B4 0 224 211 3 1254 333 138 296 11 chr3 87695776 87695864 -71903919 + PB1D9 SINE Alu 5 117 -3 3 1254 696 24 0 0 chr3 87695865 87695947 -71903836 + (GAAAA)n Simple_repeat Simple_repeat 3 84 0 3 1254 539 260 214 28 chr3 87695947 87696107 -71903676 - ID_B1 SINE B4 -14 210 16 3 1254 189 0 0 0 chr3 87696149 87696170 -71903613 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 3 1254 636 35 0 65 chr3 87696174 87696267 -71903516 - B1_Mur4 SINE Alu 0 150 64 3 1254 477 221 20 67 chr3 87696269 87696419 -71903364 - Charlie12 DNA MER1_type -174 2699 2557 3 1254 674 222 148 0 chr3 87696421 87696610 -71903173 + ID_B1 SINE B4 2 218 -6 3 1254 216 0 0 0 chr3 87696780 87696804 -71902979 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 3 1254 865 82 90 0 chr3 87696807 87696929 -71902854 - B1_Mm SINE Alu -13 134 2 3 1254 625 257 116 12 chr3 87696934 87697107 -71902676 - B3A SINE B2 -4 194 4 3 1254 371 129 57 0 chr3 87697588 87697658 -71902125 - B2_Mm1t SINE B2 0 193 120 3 1254 410 244 67 42 chr3 87697758 87697868 -71901915 + B1_Mur4 SINE Alu 3 115 -35 3 1254 846 127 8 0 chr3 87697868 87697994 -71901789 + B3 SINE B2 4 130 -86 4 1254 622 151 40 40 chr3 87698485 87698609 -71901174 + B1F SINE Alu 14 137 -12 4 1254 489 34 0 0 chr3 87698610 87698669 -71901114 + (TAA)n Simple_repeat Simple_repeat 2 60 0 4 1254 476 290 76 19 chr3 87698670 87698745 -71901038 + ID SINE ID 3 86 -138 4 1254 275 281 46 46 chr3 87698745 87698830 -71900953 + PB1D10 SINE Alu 1 88 -29 4 1254 600 253 7 20 chr3 87698830 87698979 -71900804 + B1_Mus2 SINE Alu 1 147 0 4 1254 275 281 46 46 chr3 87698979 87699001 -71900782 + PB1D10 SINE Alu 89 108 -9 4 1254 1036 92 35 0 chr3 87699066 87699207 -71900576 + B1_Mus2 SINE Alu 2 147 0 4 1254 26 0 0 0 chr3 87699243 87699269 -71900514 + AT_rich Low_complexity Low_complexity 1 26 0 4 1254 800 196 7 0 chr3 87699273 87699421 -71900362 + B1_Mur4 SINE Alu 1 149 -1 4 1254 574 258 111 20 chr3 87699436 87699634 -71900149 + B3 SINE B2 1 216 0 4 1254 615 27 0 0 chr3 87699634 87699707 -71900076 + (TTTC)n Simple_repeat Simple_repeat 3 75 0 4 1254 1039 60 45 0 chr3 87699709 87699843 -71899940 - B1_Mus2 SINE Alu -6 141 2 4 1254 23 0 0 0 chr3 87699843 87699866 -71899917 + AT_rich Low_complexity Low_complexity 1 23 0 4 1254 416 19 19 0 chr3 87699932 87699985 -71899798 + (CA)n Simple_repeat Simple_repeat 2 55 0 4 1254 363 274 36 9 chr3 87700062 87700193 -71899590 + MLT1A1 LTR MaLR 215 405 -3 4 1254 372 198 12 36 chr3 87700284 87700368 -71899415 - ID_B1 SINE B4 0 224 143 4 1254 272 170 0 39 chr3 87700368 87700414 -71899369 + T-rich Low_complexity Low_complexity 55 100 0 4 1254 1300 7 7 0 chr3 87700414 87700560 -71899223 - B1_Mm SINE Alu 0 147 1 4 1254 272 170 0 39 chr3 87700560 87700617 -71899166 + T-rich Low_complexity Low_complexity 2 54 0 4 1254 1204 43 0 0 chr3 87700722 87700860 -71898923 + B1_Mm SINE Alu 1 138 -9 4 1254 363 23 0 0 chr3 87700860 87700904 -71898879 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 4 1254 724 120 0 0 chr3 87700919 87701019 -71898764 - B2_Mm2 SINE B2 -94 101 2 4 1254 275 65 0 21 chr3 87701030 87701077 -71898706 + (TTTG)n Simple_repeat Simple_repeat 3 48 0 4 1254 1234 28 0 27 chr3 87701077 87701225 -71898558 - B1_Mm SINE Alu 0 147 4 4 1254 210 91 0 0 chr3 87701259 87701292 -71898491 + (TG)n Simple_repeat Simple_repeat 1 33 0 4 1254 581 106 14 5 chr3 87701292 87701401 -71898382 - B2_Mm2 SINE B2 -106 110 2 4 1254 243 125 0 0 chr3 87701411 87701451 -71898332 + (T)n Simple_repeat Simple_repeat 1 40 0 4 1254 379 260 102 17 chr3 87701458 87701489 -71898294 - B2_Mm1a SINE B2 -1 192 162 4 1254 1066 111 0 0 chr3 87701489 87701633 -71898150 - B1_Mus2 SINE Alu 0 147 4 4 1254 379 260 102 17 chr3 87701633 87701667 -71898116 - B2_Mm1a SINE B2 -32 161 123 4 1254 210 91 0 0 chr3 87701667 87701700 -71898083 + (TG)n Simple_repeat Simple_repeat 1 33 0 4 1254 581 106 14 5 chr3 87701700 87701809 -71897974 - B2_Mm2 SINE B2 -106 110 2 4 1254 270 167 0 0 chr3 87701819 87701879 -71897904 + T-rich Low_complexity Low_complexity 1 60 0 4 1254 1081 115 0 0 chr3 87701897 87702045 -71897738 - B1_Mus1 SINE Alu 0 148 1 4 1254 285 286 53 105 chr3 87702183 87702316 -71897467 + MT2B LTR ERVL 153 278 -323 4 1254 721 257 7 0 chr3 87702203 87702343 -71897440 + B1_Mus1 SINE Alu 8 148 0 4 1254 708 169 0 0 chr3 87702343 87702473 -71897310 + GA-rich Low_complexity Low_complexity 1 130 0 4 1254 1142 58 0 0 chr3 87702715 87702854 -71896929 + B1_Mus2 SINE Alu 1 139 -8 4 1254 207 0 0 0 chr3 87702854 87702877 -71896906 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 4 1254 244 217 159 0 chr3 87702912 87702981 -71896802 + MT2B2 LTR ERVL 162 241 -343 4 1254 368 235 0 45 chr3 87702930 87703019 -71896764 + PB1D10 SINE Alu 33 117 0 4 1254 2163 178 48 0 chr3 87703094 87703492 -71896291 - MTD LTR MaLR 0 419 3 4 1254 275 231 45 83 chr3 87703517 87703649 -71896134 + HAL1 LINE L1 2274 2400 -107 4 1254 402 296 19 0 chr3 87703738 87703846 -71895937 - PB1D10 SINE Alu -7 110 1 4 1254 304 336 19 0 chr3 87703753 87703860 -71895923 - ID_B1 SINE B4 -48 176 68 4 1254 1003 198 18 23 chr3 87703929 87704146 -71895637 + B3 SINE B2 1 216 0 4 1254 1560 11 15 65 chr3 87704242 87704443 -71895340 - B2_Mm1a SINE B2 -1 192 2 4 1254 1291 92 60 0 chr3 87704445 87704629 -71895154 - B2_Mm2 SINE B2 0 195 1 4 1254 659 155 0 76 chr3 87704641 87704760 -71895023 - B1_Mus1 SINE Alu -2 146 37 4 1254 802 211 0 7 chr3 87704969 87705117 -71894666 - B1_Mur1 SINE Alu -2 147 1 4 1254 282 209 60 0 chr3 87706003 87706070 -71893713 + ID SINE ID 5 75 -149 4 1254 1109 73 0 0 chr3 87706133 87706269 -71893514 + B1_Mus1 SINE Alu 2 137 -11 4 1254 617 317 57 118 chr3 87706286 87706457 -71893326 + Charlie12 DNA MER1_type 1706 1856 -1017 4 1254 1126 95 0 0 chr3 87706457 87706604 -71893179 + B1_Mus2 SINE Alu 1 147 0 4 1254 617 317 57 118 chr3 87706604 87706913 -71892870 + Charlie12 DNA MER1_type 1857 2156 -717 4 1254 1128 103 0 0 chr3 87706913 87707070 -71892713 + B2_Mm2 SINE B2 3 160 -33 4 1254 243 0 0 0 chr3 87707070 87707097 -71892686 + (TAAA)n Simple_repeat Simple_repeat 3 29 0 4 1254 1083 161 5 0 chr3 87707097 87707125 -71892658 + B2_Mm1t SINE B2 161 188 -5 4 1254 255 243 27 0 chr3 87707106 87707180 -71892603 + Charlie12 DNA MER1_type 2152 2227 -646 4 1254 674 222 148 0 chr3 87707274 87707463 -71892320 - ID_B1 SINE B4 -6 218 2 4 1254 482 221 20 60 chr3 87707465 87707614 -71892169 + Charlie12 DNA MER1_type 2557 2699 -174 4 1254 252 0 0 0 chr3 87708120 87708148 -71891635 + (TG)n Simple_repeat Simple_repeat 1 28 0 4 1254 306 0 0 0 chr3 87708148 87708181 -71891602 + (GA)n Simple_repeat Simple_repeat 1 34 0 4 1254 233 200 180 16 chr3 87708182 87708243 -71891540 - ID2 SINE ID -12 71 1 4 1254 340 197 142 7 chr3 87708258 87708406 -71891377 + RMER17C LTR ERVK 108 275 -135 4 1254 1228 48 0 0 chr3 87708577 87708723 -71891060 - B1_Mm SINE Alu 0 147 2 4 1254 568 230 159 12 chr3 87708754 87708917 -71890866 + B3A SINE B2 2 188 -10 4 1254 1100 98 10 111 chr3 87708928 87709135 -71890648 + B2_Mm1a SINE B2 2 187 -6 4 1254 851 99 122 0 chr3 87709146 87709277 -71890506 + B1_Mus1 SINE Alu 2 148 0 4 1254 214 145 29 101 chr3 87709311 87709367 -71890416 + B1_Mur1 SINE Alu 86 137 -12 4 1254 980 94 58 0 chr3 87709367 87709505 -71890278 + B1_Mus1 SINE Alu 3 148 0 4 1254 216 93 44 44 chr3 87709505 87709517 -71890266 + PB1D9 SINE Alu 109 120 0 4 1254 26 30 0 0 chr3 87710516 87710549 -71889234 + GC_rich Low_complexity Low_complexity 1 33 0 4 1254 288 0 0 0 chr3 87711489 87711521 -71888262 + (TG)n Simple_repeat Simple_repeat 2 33 0 4 1254 1157 63 0 14 chr3 87713055 87713200 -71886583 - B1_Mus1 SINE Alu -1 147 5 4 1254 744 70 211 0 chr3 87713272 87713386 -71886397 - B1_Mus1 SINE Alu -10 138 1 4 1254 1057 157 46 20 chr3 87715167 87715362 -71884421 + B3 SINE B2 7 206 -10 4 1254 206 255 86 36 chr3 87715395 87715521 -71884262 + MIR SINE MIR 61 186 -82 4 1254 294 250 56 11 chr3 87715616 87715705 -71884078 - PB1D10 SINE Alu -1 116 24 4 1254 473 213 136 38 chr3 87715742 87715874 -71883909 - B1_Mur2 SINE Alu -1 148 4 4 1254 339 207 81 47 chr3 87715797 87715883 -71883900 - MT2B LTR ERVL -357 244 156 4 1254 566 221 70 78 chr3 87716132 87716224 -71883559 + B1_Mus1 SINE Alu 1 97 -51 4 1254 857 148 65 43 chr3 87716224 87716408 -71883375 + B2_Mm2 SINE B2 2 189 -6 4 1254 566 221 70 78 chr3 87716408 87716457 -71883326 + B1_Mus1 SINE Alu 98 141 -7 4 1254 385 147 15 0 chr3 87716681 87716750 -71883033 + PB1D10 SINE Alu 46 125 -2 4 1254 207 269 0 0 chr3 87719612 87719679 -71880104 + A-rich Low_complexity Low_complexity 1 67 0 4 1254 553 251 99 55 chr3 87720224 87720426 -71879357 - B3 SINE B2 -2 214 4 4 1254 296 284 90 11 chr3 87720446 87720535 -71879248 + PB1D10 SINE Alu 1 96 -21 4 1254 261 0 0 0 chr3 87720586 87720615 -71879168 + (CA)n Simple_repeat Simple_repeat 1 29 0 4 1254 255 154 0 0 chr3 87720630 87720669 -71879114 + ID_B1 SINE B4 112 150 -74 4 1254 213 246 88 0 chr3 87720669 87720726 -71879057 + B4 SINE B4 30 91 -201 4 1254 1213 80 90 11 chr3 87720995 87721172 -71878611 + B2_Mm2 SINE B2 1 191 -4 4 1254 503 261 218 0 chr3 87721188 87721330 -71878453 + B3 SINE B2 4 176 -40 4 1254 386 228 136 19 chr3 87721374 87721477 -71878306 - RSINE1 SINE B4 -48 117 3 4 1254 318 107 79 13 chr3 87721484 87721587 -71878196 - B2_Mm2 SINE B2 -4 191 47 4 1254 354 258 84 53 chr3 87721619 87721638 -71878145 - B4A SINE B4 -157 135 1 4 1254 494 149 15 52 chr3 87721638 87721750 -71878033 - B2_Mm1t SINE B2 -87 111 1 4 1254 890 79 48 35 chr3 87721783 87721928 -71877855 + B1_Mus2 SINE Alu 1 147 0 4 1254 189 0 0 0 chr3 87721972 87721993 -71877790 + (A)n Simple_repeat Simple_repeat 1 21 0 4 1254 246 256 132 60 chr3 87722261 87722344 -71877439 - PB1D10 SINE Alu 0 117 29 4 1254 568 212 73 0 chr3 87722462 87722599 -71877184 + B1_Mm SINE Alu 1 147 0 4 1254 315 333 69 38 chr3 87722655 87722786 -71876997 + ID_B1 SINE B4 36 170 -54 4 1254 255 313 0 15 chr3 87724177 87724245 -71875538 + ID SINE ID 14 80 -144 4 1254 1536 57 0 0 chr3 87724455 87724648 -71875135 - B2_Mm1t SINE B2 0 193 1 4 1254 724 225 78 45 chr3 87724660 87724902 -71874881 - RMER17C LTR ERVK -19 391 142 4 1254 567 209 58 29 chr3 87725352 87725469 -71874314 + B1F2 SINE Alu 1 115 -34 4 1254 189 0 0 0 chr3 87725469 87725490 -71874293 + (TA)n Simple_repeat Simple_repeat 1 21 0 4 1254 567 209 58 29 chr3 87725490 87725510 -71874273 + B1F2 SINE Alu 116 141 -8 4 1254 1126 81 0 0 chr3 87725542 87725690 -71874093 - B1_Mus1 SINE Alu 0 148 1 5 1254 1186 103 11 16 chr3 87726522 87726709 -71873074 - B2_Mm1t SINE B2 -7 186 1 5 1254 398 263 52 17 chr3 87728008 87728124 -71871659 + B3 SINE B2 9 128 -88 5 1254 220 274 0 0 chr3 87728683 87728734 -71871049 - PB1D9 SINE Alu -69 51 1 5 1254 246 146 0 40 chr3 87728735 87728785 -71870998 - ID_B1 SINE B4 0 224 177 5 1254 342 270 94 16 chr3 87729549 87729677 -71870106 - B1F2 SINE Alu -11 138 1 5 1254 1141 54 0 20 chr3 87729704 87729855 -71869928 - B1_Mus1 SINE Alu 0 148 1 5 1254 248 243 0 41 chr3 87729869 87729942 -71869841 - ID SINE ID -147 77 8 5 1254 1599 21 5 0 chr3 87730199 87730390 -71869393 + B2_Mm1a SINE B2 2 193 0 5 1254 1055 78 0 31 chr3 87730412 87730571 -71869212 + B2_Mm1t SINE B2 2 155 -38 5 1254 701 172 259 6 chr3 87732261 87732431 -71867352 - B3 SINE B2 0 216 4 5 1254 230 289 130 37 chr3 87732595 87732703 -71867080 + PB1D9 SINE Alu 2 119 -1 5 1254 1194 35 0 0 chr3 87732746 87732889 -71866894 + B1_Mm SINE Alu 5 147 0 5 1254 943 149 145 25 chr3 87732959 87733159 -71866624 + URR1A DNA MER1_type 1 224 -2 5 1254 449 314 16 0 chr3 87733344 87733468 -71866315 - ID_B1 SINE B4 -6 218 93 5 1254 225 119 0 0 chr3 87734304 87734346 -71865437 + (CCCCCG)n Simple_repeat Simple_repeat 5 46 0 5 1254 520 302 39 24 chr3 87734882 87735089 -71864694 - B3 SINE B2 -6 210 1 5 1254 271 253 148 11 chr3 87736354 87736442 -71863341 - MTEa LTR MaLR -262 117 18 5 1254 449 225 189 50 chr3 87736453 87736654 -71863129 - MTEa-int LTR MaLR -2 1578 1350 5 1254 442 225 0 119 chr3 87736661 87736686 -71863097 + PB1D9 SINE Alu 2 26 -94 5 1254 1199 48 0 0 chr3 87736686 87736833 -71862950 - B1_Mus1 SINE Alu 0 148 2 5 1254 442 225 0 119 chr3 87736833 87736933 -71862850 + PB1D9 SINE Alu 27 112 -8 5 1254 1472 37 16 0 chr3 87737037 87737224 -71862559 - B2_Mm1t SINE B2 -2 191 2 5 1254 1161 200 215 15 chr3 87737225 87737555 -71862228 - MTD LTR MaLR -5 414 19 5 1254 1171 223 75 28 chr3 87737566 87737926 -71861857 - MTD-int LTR MaLR -6 1252 876 5 1254 329 333 20 0 chr3 87737897 87737999 -71861784 - B1_Mus2 SINE Alu -40 107 4 5 1254 854 188 34 80 chr3 87737999 87738234 -71861549 - MTD-int LTR MaLR -1034 224 1 5 1254 915 98 83 0 chr3 87738264 87738397 -71861386 - B1_Mus1 SINE Alu -4 144 1 5 1254 951 147 132 5 chr3 87738401 87738606 -71861177 - MTD LTR MaLR -8 411 181 5 1254 2010 288 147 33 chr3 87738617 87739122 -71860661 - MTEa-int LTR MaLR -331 1249 646 5 1254 1052 70 7 27 chr3 87739122 87739269 -71860514 - B1_Mus2 SINE Alu -2 145 2 5 1254 2010 297 147 49 chr3 87739269 87739787 -71859996 - MTEa-int LTR MaLR -828 752 49 5 1254 804 224 60 32 chr3 87739889 87740106 -71859677 - ID_B1 SINE B4 -1 223 1 5 1254 501 216 63 0 chr3 87740194 87740305 -71859478 + PB1D9 SINE Alu 3 120 0 5 1254 1077 70 28 0 chr3 87740693 87740836 -71858947 - B1_Mus2 SINE Alu 0 147 1 5 1254 1296 64 0 0 chr3 87740836 87741008 -71858775 - B2_Mm2 SINE B2 -23 172 1 5 1254 388 310 80 0 chr3 87741081 87741194 -71858589 - RSINE1 SINE B4 -19 146 25 5 1254 1130 48 14 0 chr3 87741197 87741342 -71858441 + B1_Mus1 SINE Alu 2 148 0 5 1254 771 253 75 0 chr3 87741426 87741612 -71858171 - ID_B1 SINE B4 -20 204 5 5 1254 21 57 0 0 chr3 87741631 87741666 -71858117 + AT_rich Low_complexity Low_complexity 1 35 0 5 1254 838 104 0 0 chr3 87741667 87741792 -71857991 - B2_Mm2 SINE B2 -70 125 1 5 1254 326 264 18 134 chr3 87741918 87742089 -71857694 - B2_Mm2 SINE B2 -6 189 39 5 1254 265 293 0 0 chr3 87742151 87742209 -71857574 + ID4 SINE ID 4 61 -22 5 1254 373 231 176 32 chr3 87743468 87743593 -71856190 + B1F SINE Alu 2 144 -5 5 1254 256 310 0 0 chr3 87743595 87743666 -71856117 + ID4 SINE ID 2 72 -11 5 1254 422 219 20 40 chr3 87743888 87743988 -71855795 - PB1 SINE Alu -29 98 1 5 1254 1094 62 0 7 chr3 87744007 87744154 -71855629 - B1_Mus2 SINE Alu 0 147 2 5 1254 365 286 20 10 chr3 87744234 87744345 -71855438 + PB1D10 SINE Alu 1 120 0 5 1254 280 280 82 39 chr3 87744570 87744739 -71855044 - B3A SINE B2 0 216 36 5 1254 950 225 11 0 chr3 87745313 87745500 -71854283 - B3 SINE B2 -27 189 1 5 1254 321 299 27 120 chr3 87746141 87746162 -71853621 + B4A SINE B4 69 136 -156 5 1254 490 198 0 116 chr3 87746162 87746339 -71853444 + B1_Mur4 SINE Alu 10 147 -3 5 1254 321 299 27 120 chr3 87746339 87746383 -71853400 + B4A SINE B4 137 292 0 5 1254 1621 161 142 52 chr3 87746654 87746874 -71852909 - MTC LTR MaLR 0 421 211 5 1254 1009 79 50 0 chr3 87746874 87747014 -71852769 - B1_Mm SINE Alu 0 147 1 5 1254 1621 161 142 52 chr3 87747014 87747179 -71852604 - MTC LTR MaLR -211 210 1 5 1254 1037 58 0 0 chr3 87747207 87747345 -71852438 + B1_Mus1 SINE Alu 11 148 0 5 1254 958 208 30 10 chr3 87748210 87748409 -71851374 - B3 SINE B2 -12 204 2 5 1254 198 0 0 0 chr3 87748953 87748975 -71850808 + (CAGCC)n Simple_repeat Simple_repeat 5 26 0 5 1254 23 0 0 0 chr3 87752548 87752571 -71847212 + GC_rich Low_complexity Low_complexity 1 23 0 5 1254 261 0 0 0 chr3 87753349 87753378 -71846405 + (CACCC)n Simple_repeat Simple_repeat 3 31 0 5 1254 389 109 0 15 chr3 87754778 87754843 -71844940 + (TTTC)n Simple_repeat Simple_repeat 2 65 0 5 1254 1164 61 0 0 chr3 87754844 87754991 -71844792 - B1_Mus2 SINE Alu 0 147 1 5 1254 633 178 63 56 chr3 87755179 87755322 -71844461 - B1_Mus2 SINE Alu -3 144 1 5 1254 186 71 0 0 chr3 87755933 87755961 -71843822 + (CA)n Simple_repeat Simple_repeat 1 28 0 5 1254 194 241 56 0 chr3 87757735 87757789 -71841994 + MIR SINE MIR 83 139 -123 5 1254 180 0 0 0 chr3 87757800 87757820 -71841963 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 5 1254 645 152 302 24 chr3 87757834 87758003 -71841780 - B3 SINE B2 0 216 1 5 1254 342 0 0 0 chr3 87758010 87758048 -71841735 + (TTTG)n Simple_repeat Simple_repeat 3 40 0 5 1254 769 86 67 52 chr3 87758049 87758184 -71841599 - B1_Mus1 SINE Alu -7 141 5 5 1254 387 183 128 11 chr3 87758200 87758294 -71841489 + PB1D7 SINE Alu 7 111 -9 5 1254 523 306 83 35 chr3 87758302 87758556 -71841227 + B4 SINE B4 8 273 -19 5 1254 315 0 0 0 chr3 87758586 87758621 -71841162 + (GA)n Simple_repeat Simple_repeat 2 36 0 5 1254 248 214 54 54 chr3 87758651 87758725 -71841058 + ID4_ SINE ID 2 75 -8 5 1254 362 275 0 0 chr3 87758743 87758823 -71840960 + ID4_ SINE ID 1 80 -3 5 1254 234 200 18 0 chr3 87759385 87759440 -71840343 + 4.5SRNA scRNA scRNA 32 87 -7 5 1254 260 171 123 41 chr3 87759392 87759465 -71840318 + PB1D7 SINE Alu 41 119 -1 5 1254 360 310 0 17 chr3 87759483 87759598 -71840185 + PB1D7 SINE Alu 2 114 -6 5 1254 883 152 28 0 chr3 87759628 87759773 -71840010 + B1_Mur2 SINE Alu 1 149 0 5 1254 530 268 38 13 chr3 87759789 87759948 -71839835 + RSINE1 SINE B4 3 165 0 5 1254 396 0 0 0 chr3 87760035 87760079 -71839704 + (TG)n Simple_repeat Simple_repeat 2 45 0 5 1254 272 261 14 0 chr3 87760180 87760249 -71839534 + tRNA-Ala-GCY_ tRNA tRNA 3 72 -3 5 1254 1479 37 27 0 chr3 87761373 87761561 -71838222 + B2_Mm1a SINE B2 1 193 0 5 1254 429 36 0 0 chr3 87761911 87761966 -71837817 + (CA)n Simple_repeat Simple_repeat 1 55 0 5 1254 188 100 0 24 chr3 87765091 87765132 -71834651 + (TTTTTG)n Simple_repeat Simple_repeat 3 42 0 5 1254 450 0 0 0 chr3 87765219 87765269 -71834514 + (CA)n Simple_repeat Simple_repeat 2 51 0 5 1254 217 139 0 0 chr3 87765404 87765440 -71834343 - PB1D9 SINE Alu -28 92 57 5 1254 805 212 48 21 chr3 87765502 87765690 -71834093 + B3 SINE B2 1 193 -23 5 1254 369 86 0 0 chr3 87765690 87765748 -71834035 + (CA)n Simple_repeat Simple_repeat 1 58 0 5 1254 769 58 0 0 chr3 87765882 87765985 -71833798 - B1_Mm SINE Alu 0 147 45 5 1254 243 0 0 0 chr3 87766158 87766185 -71833598 + (TG)n Simple_repeat Simple_repeat 1 27 0 5 1254 201 74 0 0 chr3 87766240 87766267 -71833516 + (TG)n Simple_repeat Simple_repeat 2 28 0 5 1254 418 149 65 54 chr3 87766316 87766408 -71833375 + B3 SINE B2 48 140 -76 5 1254 711 188 30 0 chr3 87766410 87766543 -71833240 - B3 SINE B2 -75 141 5 5 1254 269 233 17 104 chr3 87766842 87766957 -71832826 + PB1D7 SINE Alu 15 119 -1 5 1254 564 42 0 0 chr3 87766968 87767039 -71832744 + (TTTTC)n Simple_repeat Simple_repeat 2 72 0 5 1254 1314 206 53 40 chr3 87767486 87767790 -71831993 - MTD LTR MaLR 0 419 112 5 1254 1016 103 7 0 chr3 87767833 87767978 -71831805 - B1_Mur4 SINE Alu 0 150 5 5 1254 511 192 158 0 chr3 87767979 87768099 -71831684 + B1_Mus2 SINE Alu 9 147 0 5 1254 287 209 171 23 chr3 87768108 87768196 -71831587 - MTD LTR MaLR -302 119 19 5 1254 480 281 40 14 chr3 87768659 87768807 -71830976 + RSINE1 SINE B4 11 162 -3 5 1254 592 202 130 60 chr3 87768947 87768971 -71830812 - B3 SINE B2 0 216 197 5 1254 1222 82 21 26 chr3 87768971 87769160 -71830623 - B2_Mm2 SINE B2 -7 188 1 5 1254 592 202 130 60 chr3 87769160 87769335 -71830448 - B3 SINE B2 -20 196 3 5 1254 700 160 38 15 chr3 87769369 87769502 -71830281 - B1_Mur2 SINE Alu -2 147 12 5 1254 1914 96 58 19 chr3 87769502 87769811 -71829972 + ORR1A4 LTR MaLR 1 321 -8 5 1254 353 16 94 0 chr3 87769844 87769908 -71829875 + (TTTTG)n Simple_repeat Simple_repeat 1 70 0 5 1254 1440 68 16 0 chr3 87769910 87770100 -71829683 - B2_Mm2 SINE B2 0 195 3 5 1254 213 291 36 0 chr3 87770116 87770171 -71829612 - PB1D7 SINE Alu -63 57 1 5 1254 300 203 15 15 chr3 87770283 87770348 -71829435 + ID SINE ID 18 82 -142 5 1254 440 235 41 29 chr3 87770439 87770610 -71829173 + (TCTCTG)n Simple_repeat Simple_repeat 2 174 0 5 1254 1248 108 11 0 chr3 87770733 87770918 -71828865 + B2_Mm1t SINE B2 4 190 -3 5 1254 4562 110 40 0 chr3 87771101 87771783 -71828000 - RMER19A LTR ERVK 0 737 29 6 1254 589 237 75 6 chr3 87771898 87772072 -71827711 - RCHARR1 DNA MER1_type -1 973 788 6 1254 510 221 19 94 chr3 87772612 87772659 -71827124 - RCHARR1 DNA MER1_type -176 798 761 6 1254 1089 35 7 65 chr3 87772659 87772813 -71826970 - B1_Mus1 SINE Alu -2 146 2 6 1254 510 221 19 94 chr3 87772813 87772925 -71826858 - RCHARR1 DNA MER1_type -214 760 651 6 1254 519 179 188 56 chr3 87772958 87773118 -71826665 - B3A SINE B2 -16 182 2 6 1254 630 226 34 0 chr3 87773119 87773251 -71826532 - RCHARR1 DNA MER1_type -306 668 532 6 1254 1256 101 17 0 chr3 87773251 87773429 -71826354 - B2_Mm2 SINE B2 -14 181 1 6 1254 630 226 34 0 chr3 87773429 87773442 -71826341 - RCHARR1 DNA MER1_type -443 531 519 6 1254 561 195 39 31 chr3 87773435 87773562 -71826221 - B1_Mur1 SINE Alu 0 149 22 6 1254 216 0 0 0 chr3 87773664 87773688 -71826095 + (TG)n Simple_repeat Simple_repeat 2 25 0 6 1254 660 168 217 128 chr3 87773748 87773915 -71825868 - ORR1D1 LTR MaLR -98 276 80 6 1254 1167 61 0 0 chr3 87773915 87774062 -71825721 - B1_Mus1 SINE Alu 0 148 2 6 1254 660 168 217 128 chr3 87774062 87774120 -71825663 - ORR1D1 LTR MaLR -295 79 31 6 1254 338 269 47 19 chr3 87774363 87774469 -71825314 + PB1D10 SINE Alu 4 112 -5 6 1254 192 233 23 0 chr3 87774681 87774724 -71825059 - MIRm SINE MIR -126 150 107 6 1254 649 259 38 0 chr3 87777098 87777283 -71822500 - B3A SINE B2 -5 193 2 6 1254 342 126 355 0 chr3 87778978 87779088 -71820695 - B2_Mm2 SINE B2 0 195 47 6 1254 1336 91 11 0 chr3 87779135 87779311 -71820472 - B2_Mm1t SINE B2 -14 179 2 6 1254 225 274 0 0 chr3 87783337 87783399 -71816384 + GA-rich Low_complexity Low_complexity 1 62 0 6 1254 3364 48 5 0 chr3 87788604 87789002 -71810781 - MTB LTR MaLR 0 400 1 6 1254 225 231 0 0 chr3 87789947 87789986 -71809797 + C-rich Low_complexity Low_complexity 1 39 0 6 1254 1060 173 34 29 chr3 87793438 87793646 -71806137 - B3 SINE B2 -5 211 3 6 1254 414 0 0 0 chr3 87793789 87793835 -71805948 + (CA)n Simple_repeat Simple_repeat 2 47 0 6 1254 275 266 10 21 chr3 87793907 87794003 -71805780 + GA-rich Low_complexity Low_complexity 1 95 0 6 1254 225 0 0 0 chr3 87797615 87797640 -71802143 + (GGGGA)n Simple_repeat Simple_repeat 5 29 0 6 1254 378 0 0 0 chr3 87800231 87800273 -71799510 + (CTG)n Simple_repeat Simple_repeat 1 42 0 6 1254 328 25 0 0 chr3 87800273 87800313 -71799470 - HAL1-3A_ME LINE L1 -846 2012 1973 6 1254 250 264 0 0 chr3 87801920 87801994 -71797789 + MIRc SINE MIR 76 149 -59 6 1254 201 133 0 0 chr3 87802049 87802079 -71797704 + (TCTG)n Simple_repeat Simple_repeat 3 32 0 6 1254 696 296 157 4 chr3 87802219 87802500 -71797283 + MER2 DNA MER2_type 2 325 -20 6 1254 282 183 0 112 chr3 87803943 87804023 -71795760 - MIRc SINE MIR -145 123 53 6 1254 314 58 39 0 chr3 87805126 87805178 -71794605 + (CAAAA)n Simple_repeat Simple_repeat 2 55 0 6 1254 1025 63 225 6 chr3 87807032 87807192 -71792591 - B2_Mm2 SINE B2 0 195 1 6 1254 752 185 7 0 chr3 87807210 87807345 -71792438 - B3A SINE B2 -36 162 27 6 1254 893 164 13 20 chr3 87807351 87807500 -71792283 - B1_Mur2 SINE Alu 0 149 2 6 1254 180 259 0 0 chr3 87808027 87808081 -71791702 + CT-rich Low_complexity Low_complexity 3 56 0 6 1254 858 43 0 25 chr3 87808191 87808309 -71791474 - B1_Mm SINE Alu 0 147 33 6 1254 1820 159 75 0 chr3 87808305 87808386 -71791397 - RMER19B LTR ERVK -24 878 798 6 1254 1138 121 48 37 chr3 87808386 87808575 -71791208 + B2_Mm2 SINE B2 2 192 -3 6 1254 1628 47 0 0 chr3 87808575 87808767 -71791016 + B2_Mm1t SINE B2 2 193 0 6 1254 1820 159 75 0 chr3 87808767 87809017 -71790766 - RMER19B LTR ERVK -105 797 523 6 1254 284 288 38 0 chr3 87809090 87809170 -71790613 - B4A SINE B4 0 292 210 6 1254 273 188 0 0 chr3 87809181 87809229 -71790554 + PB1D9 SINE Alu 2 49 -71 6 1254 683 107 27 0 chr3 87809227 87809339 -71790444 + B2_Mm2 SINE B2 81 195 0 6 1254 488 274 81 0 chr3 87809351 87809475 -71790308 + B1F2 SINE Alu 2 135 -14 6 1254 769 224 38 5 chr3 87810159 87810342 -71789441 - B3 SINE B2 -13 203 15 6 1254 1297 80 95 0 chr3 87810342 87810542 -71789241 - URR1A DNA MER1_type -1 225 7 6 1254 192 125 0 0 chr3 87810999 87811031 -71788752 + (T)n Simple_repeat Simple_repeat 1 32 0 6 1254 441 209 58 75 chr3 87811074 87811321 -71788462 - B4A SINE B4 0 292 9 6 1254 387 271 47 0 chr3 87811342 87811449 -71788334 - ID_B1 SINE B4 -13 211 100 6 1254 518 90 44 11 chr3 87811502 87811592 -71788191 - B2_Mm2 SINE B2 -10 185 93 6 1254 1214 62 0 0 chr3 87811626 87811772 -71788011 - B1_Mm SINE Alu 0 147 2 6 1254 188 34 0 33 chr3 87812204 87812234 -71787549 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 6 1254 1089 81 0 0 chr3 87812234 87812370 -71787413 - B1_Mus1 SINE Alu -10 138 3 6 1254 887 248 20 5 chr3 87812371 87812566 -71787217 - B3 SINE B2 -16 200 3 6 1254 602 275 82 36 chr3 87813036 87813232 -71786551 - ID_B1 SINE B4 -11 213 9 6 1254 239 350 10 0 chr3 87813232 87813329 -71786454 - L1M3 LINE L1 -573 5610 5513 6 1254 370 237 181 15 chr3 87813349 87813482 -71786301 + ID_B1 SINE B4 70 224 0 6 1254 832 133 0 8 chr3 87813482 87813611 -71786172 + B1_Mur4 SINE Alu 10 137 -13 6 1254 234 0 0 0 chr3 87813611 87813637 -71786146 + (CAA)n Simple_repeat Simple_repeat 2 27 0 6 1254 340 139 333 11 chr3 87813720 87813807 -71785976 - PB1D10 SINE Alu 0 117 3 6 1254 1247 21 14 0 chr3 87813977 87814121 -71785662 + B1_Mus2 SINE Alu 2 147 0 6 1254 250 226 155 9 chr3 87814273 87814389 -71785394 + RMER15 LTR ERVL 426 558 -17 6 1254 650 180 0 15 chr3 87814533 87814670 -71785113 + B1_Mur2 SINE Alu 15 144 -5 6 1254 25 51 0 0 chr3 87814882 87814921 -71784862 + AT_rich Low_complexity Low_complexity 1 39 0 6 1254 522 176 0 47 chr3 87815106 87815122 -71784661 - B1_Mur1 SINE Alu -1 148 137 6 1254 243 0 0 0 chr3 87815122 87815149 -71784634 + (TTTG)n Simple_repeat Simple_repeat 1 27 0 6 1254 522 176 0 47 chr3 87815149 87815239 -71784544 - B1_Mur1 SINE Alu -13 136 47 6 1254 270 0 0 0 chr3 87815276 87815306 -71784477 + (CAAA)n Simple_repeat Simple_repeat 1 30 0 6 1254 413 290 110 0 chr3 87815390 87815535 -71784248 - RSINE1 SINE B4 -1 164 4 6 1254 465 223 144 15 chr3 87815666 87815798 -71783985 - B1_Mur2 SINE Alu 0 149 1 6 1254 228 255 9 130 chr3 87816013 87816121 -71783662 - PB1D10 SINE Alu -1 116 22 6 1254 276 30 0 0 chr3 87816184 87816217 -71783566 + (TTTTA)n Simple_repeat Simple_repeat 5 37 0 6 1254 1345 77 33 0 chr3 87816630 87816811 -71782972 - B2_Mm2 SINE B2 -7 188 2 6 1254 2529 182 32 36 chr3 87816890 87817354 -71782429 + RLTR20B3 LTR ERVK 21 471 -106 6 1254 384 40 0 0 chr3 87817354 87817404 -71782379 + (TG)n Simple_repeat Simple_repeat 1 50 0 6 1254 2529 182 32 36 chr3 87817404 87817498 -71782285 + RLTR20B3 LTR ERVK 472 577 0 6 1254 1021 67 15 7 chr3 87818011 87818146 -71781637 - B1_Mur4 SINE Alu -13 137 2 6 1254 189 0 0 0 chr3 87818155 87818176 -71781607 + (T)n Simple_repeat Simple_repeat 1 21 0 6 156 1316 14 0 0 chr3 87818181 87818328 -71781455 - B1_Mm SINE Alu 0 147 1 6 1255 4405 114 46 9 chr3 87818328 87819021 -71780762 - RMER19A LTR ERVK -17 720 1 6 1255 868 191 0 0 chr3 87819031 87819172 -71780611 - B1_Mus1 SINE Alu -6 142 2 6 1255 1125 259 93 14 chr3 87820219 87820580 -71779203 + RMER1B Other Other 49 525 -541 6 1255 3777 175 163 29 chr3 87820586 87821607 -71778176 + RMER1A Other Other 2 941 -89 6 1255 728 232 107 8 chr3 87821616 87821868 -71777915 - RLTR12B LTR ERVK -9 519 243 6 1255 635 238 41 83 chr3 87821880 87822145 -71777638 - RLTR12B LTR ERVK -230 298 55 6 1255 266 87 65 0 chr3 87822145 87822191 -71777592 + RMER1A Other Other 972 1020 -10 6 1255 1408 81 0 11 chr3 87822195 87822382 -71777401 + B2_Mm2 SINE B2 2 186 -9 6 1255 1315 93 11 16 chr3 87822405 87822590 -71777193 + B2_Mm1t SINE B2 1 184 -9 6 1255 1658 26 21 0 chr3 87822596 87822785 -71776998 + B2_Mm1a SINE B2 1 193 0 6 1255 516 226 5 33 chr3 87822791 87823001 -71776782 + RLTR42-int LTR ERVK 1914 2117 -3405 6 1255 887 148 0 29 chr3 87823001 87823140 -71776643 + B1_Mus2 SINE Alu 1 135 -12 6 1255 437 256 37 46 chr3 87823140 87823306 -71776477 + RLTR42-int LTR ERVK 2050 2221 -3301 6 1255 2843 181 71 54 chr3 87823344 87823461 -71776322 + RLTR42-int LTR ERVK 2187 2305 -3217 6 1255 209 57 29 0 chr3 87823461 87823496 -71776287 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 6 1255 1255 34 7 0 chr3 87823502 87823648 -71776135 - B1_Mus2 SINE Alu 0 147 1 6 1255 2843 181 71 54 chr3 87823648 87824175 -71775608 + RLTR42-int LTR ERVK 2306 2849 -2673 6 1255 522 222 193 0 chr3 87825699 87825834 -71773949 - B3 SINE B2 -50 166 6 6 1255 577 219 0 8 chr3 87825875 87825999 -71773784 + B1_Mur4 SINE Alu 27 149 -1 6 1255 23 33 0 0 chr3 87826919 87826949 -71772834 + GC_rich Low_complexity Low_complexity 1 30 0 6 1255 477 0 0 0 chr3 87828703 87828756 -71771027 + (TC)n Simple_repeat Simple_repeat 2 54 0 6 1255 275 65 22 0 chr3 87829104 87829150 -71770633 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 6 1255 327 333 65 32 chr3 87829249 87829404 -71770379 + MIRb SINE MIR 70 229 -39 6 1255 249 186 337 10 chr3 87829609 87829707 -71770076 + B1_Mur4 SINE Alu 19 148 -2 6 1255 212 216 13 26 chr3 87829709 87829785 -71769998 + A-rich Low_complexity Low_complexity 3 77 0 6 1255 319 271 107 15 chr3 87829806 87829937 -71769846 + B3 SINE B2 45 187 -29 6 1255 345 311 59 98 chr3 87829945 87829956 -71769827 + B4 SINE B4 70 78 -214 6 1255 1111 82 0 39 chr3 87829956 87830093 -71769690 + B1_Mus2 SINE Alu 1 137 -10 6 1255 282 29 0 0 chr3 87830093 87830128 -71769655 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 6 1255 1111 82 0 39 chr3 87830128 87830143 -71769640 + B1_Mus2 SINE Alu 138 147 0 6 1255 345 311 59 98 chr3 87830143 87830284 -71769499 + B4 SINE B4 79 216 -76 6 1255 787 190 0 14 chr3 87830156 87830295 -71769488 + B1_Mur4 SINE Alu 13 149 -1 6 1255 591 272 12 18 chr3 87830355 87830520 -71769263 + RSINE1 SINE B4 2 165 0 6 1255 884 216 36 50 chr3 87831820 87832039 -71767744 - B3 SINE B2 0 216 1 7 1255 437 224 121 0 chr3 87832122 87832238 -71767545 + RSINE1 SINE B4 1 130 -35 7 1255 346 281 11 11 chr3 87832309 87832399 -71767384 + PB1D7 SINE Alu 31 120 0 7 1255 180 111 0 0 chr3 87832399 87832426 -71767357 + (A)n Simple_repeat Simple_repeat 1 27 0 7 1255 918 216 32 0 chr3 87832435 87832625 -71767158 + B3 SINE B2 20 215 -1 7 1255 1225 74 0 0 chr3 87832630 87832778 -71767005 + B1_Mus1 SINE Alu 1 148 0 7 1255 183 100 0 0 chr3 87832779 87832809 -71766974 + (CAAAA)n Simple_repeat Simple_repeat 1 30 0 7 1255 1218 57 0 0 chr3 87832813 87832971 -71766812 + B2_Mm2 SINE B2 1 158 -37 7 1255 230 29 59 0 chr3 87832971 87833005 -71766778 + (TAAA)n Simple_repeat Simple_repeat 2 37 0 7 1255 210 237 0 0 chr3 87833277 87833315 -71766468 + polypyrimidine Low_complexity Low_complexity 3 40 0 7 1255 707 250 0 13 chr3 87833332 87833482 -71766301 + B1_Mur2 SINE Alu 1 148 -1 7 1255 1395 85 37 0 chr3 87833498 87833686 -71766097 - B2_Mm2 SINE B2 0 195 1 7 1255 733 244 70 5 chr3 87833701 87833886 -71765897 - B3A SINE B2 -1 197 1 7 1255 792 155 0 30 chr3 87834061 87834194 -71765589 - B1_Mur1 SINE Alu 0 149 21 7 1255 917 225 6 0 chr3 87834226 87834408 -71765375 - B3 SINE B2 -14 202 20 7 1255 240 276 77 48 chr3 87835886 87836003 -71763780 - B1F SINE Alu 0 120 1 7 1255 453 231 84 28 chr3 87836255 87836362 -71763421 + MT2B2 LTR ERVL 3 115 -418 7 1255 1081 211 35 16 chr3 87836788 87837114 -71762669 + MT2B2 LTR ERVL 92 584 0 7 1255 907 205 49 20 chr3 87837479 87837723 -71762060 - RLTR42-int LTR ERVK -55 5467 5217 7 1255 571 108 14 196 chr3 87837750 87837888 -71761895 + ORR1C1 LTR MaLR 1 113 -265 7 1255 281 280 0 13 chr3 87837888 87837964 -71761819 + RLTR24 LTR ERV1 1 75 -454 7 1255 1708 108 7 66 chr3 87838267 87838554 -71761229 + ORR1C1 LTR MaLR 109 378 0 7 1255 1987 206 40 18 chr3 87838554 87838954 -71760829 + ORR1C1-int LTR MaLR 1 409 -1100 7 1255 2090 164 72 37 chr3 87838974 87839431 -71760352 - RLTR42-int LTR ERVK -343 5179 4707 7 1255 497 294 23 41 chr3 87839433 87839653 -71760130 - RLTR42-int LTR ERVK -1089 4433 4218 7 1255 525 183 126 34 chr3 87839745 87839864 -71759919 + B1_Mur4 SINE Alu 2 131 -19 7 1255 408 88 0 0 chr3 87839864 87839921 -71759862 + (TCTA)n Simple_repeat Simple_repeat 3 59 0 7 1255 2135 160 8 38 chr3 87839922 87840081 -71759702 - RLTR42-int LTR ERVK -2616 2906 2751 7 1255 3208 39 42 0 chr3 87840081 87840465 -71759318 - MTB LTR MaLR 0 400 1 7 1255 2135 160 8 38 chr3 87840465 87840701 -71759082 - RLTR42-int LTR ERVK -2772 2750 2523 7 1255 1231 162 61 20 chr3 87840727 87840786 -71758997 - RLTR14 LTR ERV1 -2 380 323 7 1255 708 196 276 0 chr3 87840786 87840949 -71758834 + B3 SINE B2 2 209 -7 7 1255 981 87 0 0 chr3 87840950 87841100 -71758683 + (GAA)n Simple_repeat Simple_repeat 3 152 0 7 1255 1231 162 61 20 chr3 87841100 87841283 -71758500 - RLTR14 LTR ERV1 -60 322 126 7 1255 944 285 127 45 chr3 87841473 87842134 -71757649 - RLTR42-int LTR ERVK -4640 882 168 7 1255 3141 107 12 94 chr3 87842202 87842767 -71757016 - MURVY-LTR LTR ERV1 0 519 1 7 1255 1311 233 13 10 chr3 87843440 87843743 -71756040 - RMER15-int LTR ERVL -3184 1815 1512 7 1255 402 229 60 0 chr3 87843743 87843826 -71755957 - RMER15 LTR ERVL -471 104 17 7 1255 467 238 73 73 chr3 87843835 87843971 -71755812 - B3 SINE B2 -78 138 3 7 1255 676 270 0 0 chr3 87843993 87844141 -71755642 - B1_Mur2 SINE Alu 0 149 2 7 1255 384 152 0 0 chr3 87844143 87844209 -71755574 + T-rich Low_complexity Low_complexity 1 66 0 7 1255 432 0 0 0 chr3 87844209 87844257 -71755526 + (TC)n Simple_repeat Simple_repeat 2 49 0 7 1255 813 194 0 0 chr3 87844258 87844423 -71755360 + CT-rich Low_complexity Low_complexity 1 165 0 7 1255 346 317 0 30 chr3 87844423 87844540 -71755243 - B1F1 SINE Alu -6 114 1 7 1255 396 295 9 28 chr3 87844624 87844732 -71755051 + B1_Mm SINE Alu 40 145 -2 7 1255 557 268 8 16 chr3 87844844 87844973 -71754810 - ID_B1 SINE B4 -10 214 87 7 1255 1358 204 68 0 chr3 87845058 87845322 -71754461 - ORR1D1 LTR MaLR -92 282 1 7 1255 2072 125 63 91 chr3 87845377 87845773 -71754010 + ORR1B1 LTR MaLR 1 385 -9 7 1255 347 263 23 115 chr3 87845939 87846079 -71753704 - B3A SINE B2 0 198 69 7 1255 608 260 88 73 chr3 87846055 87846110 -71753673 - B4 SINE B4 -18 274 143 7 1255 1127 36 7 0 chr3 87846110 87846248 -71753535 - B1_Mm SINE Alu 0 147 9 7 1255 608 260 88 73 chr3 87846248 87846286 -71753497 - B4 SINE B4 -18 142 46 7 1255 272 207 471 0 chr3 87846337 87846477 -71753306 - B3 SINE B2 -9 207 2 7 1255 207 0 0 0 chr3 87846850 87846873 -71752910 + (TGGGGG)n Simple_repeat Simple_repeat 2 24 0 7 1255 334 283 145 67 chr3 87847562 87847755 -71752028 + MIRb SINE MIR 61 268 0 7 1255 4890 61 0 3 chr3 87847957 87848567 -71751216 - L1Md_F2 LINE L1 0 6582 5975 7 1255 282 235 121 40 chr3 87848768 87848892 -71750891 - Charlie1 DNA MER1_type -2542 239 106 7 1255 518 184 9 60 chr3 87848870 87848986 -71750797 + B1_Mur3 SINE Alu 40 149 0 7 1255 228 350 65 0 chr3 87848971 87849094 -71750689 - Charlie1 DNA MER1_type -2647 134 4 7 1255 495 0 0 0 chr3 87849105 87849160 -71750623 + (TCTA)n Simple_repeat Simple_repeat 4 58 0 7 1255 418 301 53 0 chr3 87849161 87849294 -71750489 - B1_Mur1 SINE Alu -9 140 1 7 1255 846 135 0 22 chr3 87849327 87849463 -71750320 - B1_Mur4 SINE Alu 0 150 18 7 1255 374 252 74 115 chr3 87849330 87849478 -71750305 - B4 SINE B4 -69 223 82 7 1255 551 246 25 31 chr3 87849480 87849670 -71750113 - B3A SINE B2 -8 187 1 7 1255 262 185 45 15 chr3 87849740 87849806 -71749977 - MLT1E3 LTR MaLR 0 624 565 7 1255 1176 167 47 5 chr3 87849823 87850016 -71749767 - B3 SINE B2 -15 201 1 7 1255 180 0 0 0 chr3 87850159 87850179 -71749604 + (T)n Simple_repeat Simple_repeat 1 20 0 7 1255 729 269 57 0 chr3 87851541 87851734 -71748049 + B3 SINE B2 2 205 -11 7 1255 27 0 0 0 chr3 87851735 87851762 -71748021 + AT_rich Low_complexity Low_complexity 1 27 0 7 1255 718 136 127 15 chr3 87853017 87853151 -71746632 + B1_Mur1 SINE Alu 1 149 0 7 1255 187 241 138 0 chr3 87853692 87853750 -71746033 + MIR SINE MIR 26 91 -171 7 1255 306 0 0 0 chr3 87853760 87853794 -71745989 + (TG)n Simple_repeat Simple_repeat 2 35 0 7 1255 231 36 0 0 chr3 87853802 87853830 -71745953 + (GA)n Simple_repeat Simple_repeat 1 28 0 7 1255 431 309 52 60 chr3 87853834 87853968 -71745815 - RSINE1 SINE B4 -29 136 4 7 1255 378 237 106 156 chr3 87853972 87854152 -71745631 - MTE2b LTR MaLR -204 175 5 7 1255 626 95 95 0 chr3 87854402 87854497 -71745286 + B3A SINE B2 3 106 -92 7 1255 285 288 22 134 chr3 87854558 87854738 -71745045 - PB1D10 SINE Alu -1 310 1 7 1255 667 279 63 44 chr3 87854738 87854825 -71744958 - ID_B1 SINE B4 -132 92 2 7 1255 860 267 9 9 chr3 87854843 87855066 -71744717 - ID_B1 SINE B4 0 224 2 7 1255 243 324 104 35 chr3 87856299 87856443 -71743340 - MIR3 SINE MIR -6 202 49 7 1255 2479 126 193 12 chr3 87856638 87857120 -71742663 + RMER4B LTR ERVK 17 585 0 7 1255 971 138 21 0 chr3 87857143 87857288 -71742495 - B1_Mus1 SINE Alu 0 148 1 7 1255 201 195 0 0 chr3 87857604 87857645 -71742138 + T-rich Low_complexity Low_complexity 1 41 0 7 1255 706 257 130 63 chr3 87857653 87857923 -71741860 - B4A SINE B4 0 292 5 7 1255 491 252 0 34 chr3 87859919 87860038 -71739745 - PB1D9 SINE Alu -1 119 5 7 1255 1018 38 45 0 chr3 87862703 87862836 -71736947 - B1_Mm SINE Alu -3 144 6 7 1255 404 307 0 0 chr3 87862888 87862989 -71736794 - RSINE1 SINE B4 -17 148 48 7 1255 229 316 69 30 chr3 87863250 87863351 -71736432 - B3A SINE B2 0 198 94 7 1255 241 323 48 134 chr3 87863342 87863468 -71736315 - ID_B1 SINE B4 -15 209 86 7 1255 189 0 0 0 chr3 87863468 87863489 -71736294 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 7 1255 322 23 70 0 chr3 87863496 87863539 -71736244 - B2_Mm2 SINE B2 -101 94 49 7 1255 1205 76 58 17 chr3 87863570 87863743 -71736040 - B2_Mm2 SINE B2 -14 181 2 7 1255 189 0 0 0 chr3 87864233 87864254 -71735529 + (T)n Simple_repeat Simple_repeat 1 21 0 7 1255 1235 48 0 0 chr3 87864254 87864400 -71735383 - B1_Mus2 SINE Alu 0 147 2 7 1255 279 307 116 40 chr3 87864416 87864589 -71735194 + MLT1J LTR MaLR 1 186 -326 7 1255 926 162 7 13 chr3 87864672 87864822 -71734961 - B1_Mur2 SINE Alu 0 149 1 7 1255 1791 144 156 11 chr3 87864892 87865244 -71734539 - MTC LTR MaLR 0 421 19 7 1255 256 192 19 0 chr3 87865286 87865338 -71734445 - ID4 SINE ID -30 53 1 7 1255 726 210 76 29 chr3 87865379 87865551 -71734232 + B3A SINE B2 2 181 -17 7 1255 428 51 17 0 chr3 87865560 87865619 -71734164 + (CAT)n Simple_repeat Simple_repeat 2 61 0 7 1255 434 77 344 21 chr3 87865625 87865718 -71734065 + B1_Mus1 SINE Alu 26 148 0 7 1255 5533 186 37 77 chr3 87865734 87865990 -71733793 + Lx7 LINE L1 5517 5793 -1903 7 1255 1450 55 32 11 chr3 87865990 87866175 -71733608 + B2_Mm2 SINE B2 1 189 -6 7 1255 5533 185 29 87 chr3 87866175 87867149 -71732634 + Lx7 LINE L1 5794 6767 -929 7 1255 1237 48 0 0 chr3 87867149 87867295 -71732488 + B1_Mus2 SINE Alu 2 147 0 7 1255 5533 185 29 87 chr3 87867295 87867479 -71732304 + Lx7 LINE L1 6768 6877 -819 7 1255 2377 108 72 28 chr3 87867479 87867869 -71731914 - IAPLTR2a LTR ERVK 0 411 5 7 1255 5921 33 13 12 chr3 87867873 87868618 -71731165 - IAPEz-int LTR ERVK 0 6481 5736 7 1255 2096 83 0 0 chr3 87868617 87868895 -71730888 - IAPEz-int LTR ERVK -4845 1636 1359 7 1255 3502 57 1 16 chr3 87868895 87869473 -71730310 - IAPEz-int LTR ERVK -5819 662 168 7 1255 247 327 0 0 chr3 87869473 87869528 -71730255 - RLTR27 LTR ERVK -34 275 221 7 1255 1052 97 0 155 chr3 87869528 87869747 -71730036 - IAPEz-int LTR ERVK -6288 193 9 7 1255 2141 128 165 29 chr3 87869748 87870166 -71729617 - IAPLTR2a LTR ERVK 0 475 1 7 1255 2328 195 91 4 chr3 87870166 87870671 -71729112 + Lx7 LINE L1 6872 7420 -276 7 1255 591 174 0 0 chr3 87870818 87870933 -71728850 + GA-rich Low_complexity Low_complexity 3 117 0 7 1255 712 157 37 0 chr3 87870935 87871043 -71728740 + B1_Mur2 SINE Alu 1 112 -37 7 1255 189 0 0 0 chr3 87871065 87871086 -71728697 + (TAA)n Simple_repeat Simple_repeat 1 21 0 7 1255 404 295 77 50 chr3 87871411 87871508 -71728275 - Tigger13a DNA MER2_type -109 662 560 7 1255 1010 110 0 14 chr3 87871508 87871656 -71728127 - B1_Mus2 SINE Alu -1 146 1 7 1255 404 295 77 50 chr3 87871656 87871740 -71728043 - Tigger13a DNA MER2_type -212 559 476 7 1255 1190 181 59 0 chr3 87871747 87871951 -71727832 - B3 SINE B2 0 216 1 8 1255 1152 65 0 0 chr3 87871986 87872125 -71727658 - B1_Mus1 SINE Alu -8 140 2 8 1255 641 190 292 30 chr3 87872152 87872320 -71727463 - B3 SINE B2 0 216 5 8 1255 396 0 0 0 chr3 87872419 87872463 -71727320 + (CA)n Simple_repeat Simple_repeat 2 45 0 8 1255 443 132 256 26 chr3 87872806 87872923 -71726860 - B2_Mm2 SINE B2 -5 190 47 8 1255 1151 98 92 0 chr3 87872955 87873118 -71726665 - B2_Mm1t SINE B2 -14 179 2 8 1255 666 155 18 9 chr3 87873207 87873318 -71726465 - B1_Mur1 SINE Alu -2 147 36 8 1255 419 248 64 9 chr3 87873320 87873430 -71726353 - PB1D10 SINE Alu 0 117 2 8 1255 315 0 0 0 chr3 87877236 87877271 -71722512 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 8 1255 304 143 82 0 chr3 87877275 87877324 -71722459 - B1_Mur4 SINE Alu -84 66 14 8 1255 624 27 0 0 chr3 87877435 87877509 -71722274 + (TG)n Simple_repeat Simple_repeat 2 75 0 8 1255 431 234 0 0 chr3 87877509 87877586 -71722197 - ID4 SINE ID -3 80 4 8 1255 344 256 119 45 chr3 87877591 87877609 -71722174 - B2_Mm2 SINE B2 -6 189 1 8 1255 491 348 25 0 chr3 87877609 87877767 -71722016 - RSINE1 SINE B4 -2 163 2 8 1255 803 264 93 0 chr3 87878064 87878246 -71721537 - ID_B1 SINE B4 0 224 26 8 1255 1113 215 24 0 chr3 87879959 87880168 -71719615 + B3 SINE B2 1 214 -2 8 1255 571 250 0 61 chr3 87880178 87880310 -71719473 + B3A SINE B2 2 125 -73 8 1255 471 78 0 0 chr3 87880322 87880386 -71719397 + (CA)n Simple_repeat Simple_repeat 2 65 0 8 1255 180 0 0 0 chr3 87880386 87880405 -71719378 + (TC)n Simple_repeat Simple_repeat 2 21 0 8 1255 1215 68 0 0 chr3 87880413 87880559 -71719224 - B1_Mm SINE Alu 0 147 2 8 1255 435 19 0 0 chr3 87880560 87880612 -71719171 + (CA)n Simple_repeat Simple_repeat 2 53 0 8 1255 186 43 0 0 chr3 87880618 87880641 -71719142 + (CAA)n Simple_repeat Simple_repeat 2 24 0 8 1255 620 203 98 0 chr3 87880769 87880892 -71718891 + B1_Mm SINE Alu 1 135 -12 8 1255 614 185 8 0 chr3 87880928 87881058 -71718725 + (TA)n Simple_repeat Simple_repeat 1 131 0 8 1255 508 258 158 23 chr3 87881189 87881360 -71718423 - B3A SINE B2 -1 197 4 8 1255 603 154 38 19 chr3 87881410 87881516 -71718267 + B1_Mur2 SINE Alu 13 120 -29 8 1255 316 302 114 38 chr3 87881411 87881542 -71718241 + B4 SINE B4 97 237 -55 8 1255 345 131 0 0 chr3 87881989 87882050 -71717733 + (GGGA)n Simple_repeat Simple_repeat 4 64 0 8 1255 1296 75 40 0 chr3 87882507 87882681 -71717102 - B2_Mm2 SINE B2 0 195 15 8 1255 274 235 14 42 chr3 87882723 87882794 -71716989 - B1F2 SINE Alu -80 69 1 8 1255 31 0 0 0 chr3 87882865 87882896 -71716887 + AT_rich Low_complexity Low_complexity 1 31 0 8 1255 2846 197 165 19 chr3 87883444 87883565 -71716218 + L1_Rod LINE L1 2063 2195 -3652 8 1255 1380 81 22 0 chr3 87883565 87883750 -71716033 + B2_Mm2 SINE B2 1 189 -6 8 1255 2846 197 165 19 chr3 87883750 87884377 -71715406 + L1_Rod LINE L1 2196 2894 -2953 8 1255 180 0 0 0 chr3 87884377 87884397 -71715386 + (CAAT)n Simple_repeat Simple_repeat 2 21 0 8 1255 2846 197 165 19 chr3 87884397 87884491 -71715292 + L1_Rod LINE L1 2895 3028 -2819 8 1255 396 192 19 9 chr3 87884528 87884633 -71715150 + L1_Rod LINE L1 3496 3601 -2246 8 1255 571 233 8 8 chr3 87884633 87884754 -71715029 + MTE2b LTR MaLR 64 184 -195 8 1255 769 145 45 8 chr3 87884898 87885030 -71714753 - B1_Mur3 SINE Alu -1 148 12 8 1255 959 64 176 13 chr3 87885041 87885064 -71714719 - B2_Mm2 SINE B2 -3 192 159 8 1255 243 0 0 0 chr3 87885064 87885091 -71714692 + (TTTA)n Simple_repeat Simple_repeat 3 29 0 8 1255 959 64 176 13 chr3 87885091 87885226 -71714557 - B2_Mm2 SINE B2 -37 158 8 8 1255 919 184 201 0 chr3 87885251 87885430 -71714353 - B3 SINE B2 -1 215 1 8 1255 516 235 26 9 chr3 87886354 87886470 -71713313 + ID_B1 SINE B4 87 204 -20 8 1255 314 293 77 70 chr3 87886470 87886494 -71713289 + B1F SINE Alu 5 145 -4 8 1255 225 0 0 0 chr3 87886591 87886616 -71713167 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 8 1255 538 40 122 0 chr3 87887436 87887510 -71712273 - B1_Mus2 SINE Alu 0 147 65 8 1255 1111 90 0 0 chr3 87887535 87887679 -71712104 - B1_Mus1 SINE Alu 0 148 5 8 1255 261 218 316 60 chr3 87887686 87887803 -71711980 - B3 SINE B2 -3 213 67 8 1255 212 355 0 37 chr3 87888050 87888128 -71711655 + ID_B1 SINE B4 82 156 -68 8 1255 703 112 43 11 chr3 87888128 87888270 -71711513 + B1_Mus1 SINE Alu 1 150 0 8 1255 255 116 0 23 chr3 87888331 87888375 -71711408 - B4A SINE B4 -64 228 186 8 1255 215 371 8 33 chr3 87888379 87888499 -71711284 - ID_B1 SINE B4 -107 117 1 8 1255 861 178 140 5 chr3 87888532 87888718 -71711065 - B3 SINE B2 -5 211 1 8 1255 1614 166 133 146 chr3 87889224 87889263 -71710520 + RMER4A LTR ERVK 1 25 -441 8 1255 800 162 6 57 chr3 87889263 87889420 -71710363 - B1_Mur3 SINE Alu 0 149 1 8 1255 1614 166 133 146 chr3 87889420 87889852 -71709931 + RMER4A LTR ERVK 26 466 0 8 1255 764 172 13 58 chr3 87890332 87890486 -71709297 + B1_Mur3 SINE Alu 1 147 -2 8 1255 1453 79 16 0 chr3 87890734 87890923 -71708860 - B2_Mm1t SINE B2 -1 192 1 8 1255 263 27 0 0 chr3 87891441 87891478 -71708305 + B1_Mus2 SINE Alu 111 147 0 8 1255 880 249 19 19 chr3 87891501 87891714 -71708069 + B3 SINE B2 4 216 0 8 1255 907 156 82 18 chr3 87891718 87891888 -71707895 - B2_Mm2 SINE B2 -14 181 1 8 1255 188 0 74 0 chr3 87891892 87891919 -71707864 + (TTTTTA)n Simple_repeat Simple_repeat 2 30 0 8 1255 966 122 181 96 chr3 87892095 87892294 -71707489 - B3 SINE B2 0 216 1 8 1255 351 0 0 0 chr3 87893028 87893067 -71706716 + (TG)n Simple_repeat Simple_repeat 1 39 0 8 1255 340 281 31 0 chr3 87894986 87895082 -71704701 + PB1D10 SINE Alu 16 114 -3 8 1255 610 312 85 15 chr3 87895888 87896158 -71703625 - B4A SINE B4 -2 290 2 8 1255 379 254 7 126 chr3 87896815 87896950 -71702833 - PB1D7 SINE Alu 0 120 2 8 1255 21 36 0 0 chr3 87896964 87896992 -71702791 + AT_rich Low_complexity Low_complexity 1 28 0 8 1255 499 163 20 10 chr3 87896999 87897098 -71702685 + PB1D9 SINE Alu 6 105 -15 8 1255 1086 201 28 23 chr3 87897125 87897339 -71702444 - B3 SINE B2 0 216 2 8 1255 1219 41 7 0 chr3 87897387 87897533 -71702250 - B1_Mus1 SINE Alu 0 148 2 8 1255 855 114 66 29 chr3 87897605 87897741 -71702042 - B1_Mur4 SINE Alu -7 143 3 8 1255 271 306 190 0 chr3 87899251 87899372 -71700411 + MIR SINE MIR 84 227 -35 8 1255 546 292 6 55 chr3 87899605 87899768 -71700015 - ID_B1 SINE B4 0 224 70 8 1255 1396 98 5 0 chr3 87899853 87900037 -71699746 + B2_Mm1a SINE B2 1 185 -8 8 1255 1376 89 15 20 chr3 87900535 87900730 -71699053 + B2_Mm2 SINE B2 2 195 0 8 1255 199 288 121 0 chr3 87901143 87901209 -71698574 - L2a LINE L2 -12 3414 3341 8 1255 392 228 12 12 chr3 87901422 87901502 -71698281 + ID4_ SINE ID 2 81 -2 8 1255 370 312 161 13 chr3 87901606 87901830 -71697953 - L2a LINE L2 -559 2860 2604 8 1255 348 280 171 45 chr3 87903433 87903609 -71696174 + B3A SINE B2 1 198 0 8 1255 207 100 0 0 chr3 87903612 87903642 -71696141 + (T)n Simple_repeat Simple_repeat 1 30 0 8 1255 1365 93 5 15 chr3 87903739 87903935 -71695848 + B2_Mm2 SINE B2 2 195 0 8 1255 1662 197 94 11 chr3 87904683 87905072 -71694711 - MTD LTR MaLR -14 405 1 8 1255 273 355 174 0 chr3 87906077 87906232 -71693551 + MIR SINE MIR 11 192 -70 8 1255 647 205 8 16 chr3 87907158 87907282 -71692501 - RSINE1 SINE B4 -40 125 3 8 1255 1505 188 70 65 chr3 87907533 87907903 -71691880 - ORR1D1 LTR MaLR 0 374 3 8 1255 416 269 111 37 chr3 87908671 87908860 -71690923 - B4A SINE B4 -87 205 3 8 1255 1551 188 74 96 chr3 87909542 87909765 -71690018 - MTD LTR MaLR 0 419 219 8 1255 1384 89 10 10 chr3 87909765 87909957 -71689826 - B2_Mm1t SINE B2 0 193 2 8 1255 1551 188 74 96 chr3 87909957 87910150 -71689633 - MTD LTR MaLR -201 218 12 8 1255 231 286 26 0 chr3 87910433 87910510 -71689273 + MIR SINE MIR 66 144 -118 8 1255 766 211 0 21 chr3 87910575 87910720 -71689063 + B3 SINE B2 1 142 -74 8 1255 291 93 0 0 chr3 87910736 87910779 -71689004 + (CA)n Simple_repeat Simple_repeat 2 44 0 8 1255 271 219 48 43 chr3 87910779 87910903 -71688880 + PB1D9 SINE Alu 13 135 -14 8 1255 218 138 32 65 chr3 87910972 87911034 -71688749 + T-rich Low_complexity Low_complexity 2 61 0 8 1255 1024 150 0 7 chr3 87914390 87914538 -71685245 - B1_Mur2 SINE Alu -1 148 2 8 1255 1131 146 73 0 chr3 87914541 87914733 -71685050 - B3 SINE B2 -10 206 1 8 1255 255 281 24 88 chr3 87914749 87914874 -71684909 + ID_B1 SINE B4 108 224 0 8 1255 727 191 20 66 chr3 87914915 87915066 -71684717 + B1_Mur3 SINE Alu 1 144 -5 8 1255 1166 83 0 0 chr3 87915303 87915448 -71684335 + B1_Mus1 SINE Alu 2 146 -2 8 1255 379 218 78 10 chr3 87915839 87915952 -71683831 + PB1D10 SINE Alu 2 116 -1 8 1255 314 263 39 78 chr3 87918260 87918388 -71681395 - RSINE1 SINE B4 0 165 43 8 1255 378 139 0 0 chr3 87919055 87919127 -71680656 + (TC)n Simple_repeat Simple_repeat 2 73 0 8 1255 321 123 0 0 chr3 87919476 87919541 -71680242 + (TTTG)n Simple_repeat Simple_repeat 1 65 0 8 1255 994 47 0 0 chr3 87919542 87919669 -71680114 - B1_Mus2 SINE Alu -2 145 19 8 1255 1101 134 37 5 chr3 87920161 87920348 -71679435 - B2_Mm2 SINE B2 -1 194 2 8 1255 320 253 0 0 chr3 87921735 87921810 -71677973 + PB1D10 SINE Alu 1 75 -42 9 1255 444 306 29 75 chr3 87921810 87921983 -71677800 + RSINE1 SINE B4 1 165 0 9 1255 975 97 0 7 chr3 87922058 87922204 -71677579 + B2_Mm2 SINE B2 31 175 -20 9 1255 235 354 12 0 chr3 87922239 87922321 -71677462 + ID4_ SINE ID 1 83 0 9 1255 532 231 215 21 chr3 87922470 87922656 -71677127 - ID_B1 SINE B4 -1 223 2 9 1255 299 178 149 14 chr3 87922673 87922747 -71677036 - B4 SINE B4 -207 85 2 9 1255 400 248 168 0 chr3 87922812 87922949 -71676834 - B4A SINE B4 -85 207 48 9 1255 333 0 0 0 chr3 87922990 87923027 -71676756 + (TCTG)n Simple_repeat Simple_repeat 2 38 0 9 1255 534 295 59 16 chr3 87923032 87923218 -71676565 - B3A SINE B2 -2 196 3 9 1255 448 176 88 0 chr3 87923225 87923327 -71676456 - PB1D7 SINE Alu 0 120 10 9 1255 299 218 308 44 chr3 87923379 87923470 -71676313 - PB1D10 SINE Alu 0 117 3 9 1255 991 216 37 11 chr3 87923502 87923689 -71676094 - B3A SINE B2 -5 193 2 9 1255 468 254 0 26 chr3 87923703 87923816 -71675967 - PB1D10 SINE Alu 0 117 8 9 1255 202 225 236 0 chr3 87923867 87923956 -71675827 + MIRm SINE MIR 42 151 -125 9 1255 234 0 0 0 chr3 87925863 87925889 -71673894 + (CA)n Simple_repeat Simple_repeat 2 27 0 9 1255 402 300 83 0 chr3 87926027 87926147 -71673636 + ID_B1 SINE B4 84 213 -11 9 1255 216 0 0 0 chr3 87926148 87926172 -71673611 + (CAAAA)n Simple_repeat Simple_repeat 5 28 0 9 1255 1122 91 34 6 chr3 87926375 87926551 -71673232 - B2_Mm2 SINE B2 -6 189 9 9 1255 452 234 11 21 chr3 87926589 87926712 -71673071 - PB1D10 SINE Alu -2 147 29 9 1255 739 255 33 57 chr3 87926783 87926995 -71672788 + ID_B1 SINE B4 5 211 -13 9 1255 637 240 177 0 chr3 87927014 87927065 -71672718 + B3 SINE B2 10 71 -145 9 1255 411 21 0 0 chr3 87927065 87927113 -71672670 + (CA)n Simple_repeat Simple_repeat 1 48 0 9 1255 637 240 177 0 chr3 87927113 87927236 -71672547 + B3 SINE B2 72 213 -3 9 1255 374 324 153 19 chr3 87927254 87927562 -71672221 + L1MB7 LINE L1 5666 6012 -162 9 1255 260 250 74 12 chr3 87927582 87927663 -71672120 + PB1D10 SINE Alu 1 86 -31 9 1255 964 72 14 14 chr3 87928161 87928302 -71671481 + B1_Mur4 SINE Alu 9 149 -1 9 1255 490 178 122 0 chr3 87928311 87928418 -71671365 - MTD LTR MaLR -299 120 1 9 1255 853 207 70 15 chr3 87928423 87928624 -71671159 - B3 SINE B2 -1 215 4 9 1255 446 0 19 0 chr3 87928648 87928702 -71671081 + (TTTTG)n Simple_repeat Simple_repeat 2 56 0 9 1255 563 254 42 0 chr3 87928740 87928858 -71670925 - RSINE1 SINE B4 -41 124 2 9 1255 198 0 0 0 chr3 87928875 87928897 -71670886 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 9 1255 1182 71 0 0 chr3 87928899 87929040 -71670743 - B1_Mus1 SINE Alu -6 142 2 9 1255 449 145 0 0 chr3 87929061 87929137 -71670646 - B1_Mm SINE Alu -1 146 71 9 1255 1387 75 27 0 chr3 87929485 87929672 -71670111 + B2_Mm2 SINE B2 1 192 -3 9 1255 786 207 0 0 chr3 87929686 87929821 -71669962 + B1_Mur1 SINE Alu 10 144 -5 9 1255 450 202 160 53 chr3 87929862 87929993 -71669790 - RSINE1 SINE B4 -19 146 2 9 1255 431 127 0 0 chr3 87930136 87930207 -71669576 - B1_Mur4 SINE Alu 0 150 80 9 1255 392 283 0 40 chr3 87930236 87930361 -71669422 - ID_B1 SINE B4 -1 223 104 9 1255 1580 52 16 0 chr3 87930519 87930710 -71669073 - B2_Mm2 SINE B2 0 195 2 9 1255 23 33 0 0 chr3 87930713 87930743 -71669040 + AT_rich Low_complexity Low_complexity 1 30 0 9 1255 713 225 7 78 chr3 87930749 87930903 -71668880 - B1_Mur3 SINE Alu -5 144 2 9 1255 970 151 0 20 chr3 87930925 87931074 -71668709 - B1_Mus1 SINE Alu -2 146 1 9 1255 1427 68 10 20 chr3 87931118 87931313 -71668470 + B2_Mm1t SINE B2 1 193 0 9 1255 899 89 7 29 chr3 87931330 87931469 -71668314 + B1_Mur3 SINE Alu 8 143 -6 9 1255 358 279 3 13 chr3 87931502 87931612 -71668171 + ID4 SINE ID 8 114 -38 9 1255 206 219 16 0 chr3 87931659 87931723 -71668060 + G-rich Low_complexity Low_complexity 4 68 0 9 1255 314 338 93 12 chr3 87932118 87932280 -71667503 - MIRb SINE MIR -55 213 39 9 1255 941 208 44 5 chr3 87932391 87932594 -71667189 + B3 SINE B2 1 211 -5 9 1255 349 290 36 36 chr3 87932600 87932711 -71667072 - B3A SINE B2 -9 189 79 9 1255 1513 157 21 156 chr3 87932714 87932938 -71666845 - ORR1D1 LTR MaLR -8 366 157 9 1255 678 13 0 0 chr3 87932938 87933017 -71666766 + (GA)n Simple_repeat Simple_repeat 1 79 0 9 1255 1513 157 21 156 chr3 87933017 87933214 -71666569 - ORR1D1 LTR MaLR -218 156 2 9 1255 2342 68 58 3 chr3 87933560 87933870 -71665913 - ORR1A2 LTR MaLR 0 327 1 9 1255 357 279 70 35 chr3 87934221 87934238 -71665545 + ID_B1 SINE B4 66 179 -40 9 1255 414 269 54 0 chr3 87934238 87934331 -71665452 + B1F1 SINE Alu 1 98 -51 9 1255 1633 47 0 5 chr3 87934533 87934726 -71665057 + B2_Mm1t SINE B2 1 192 -1 9 1255 1329 101 17 0 chr3 87934736 87934915 -71664868 + B2_Mm2 SINE B2 1 182 -13 9 1255 839 48 8 23 chr3 87934938 87935067 -71664716 + B1_Mus2 SINE Alu 21 147 0 9 1255 367 296 18 18 chr3 87935253 87935363 -71664420 + PB1D10 SINE Alu 6 115 -2 9 1255 461 299 47 0 chr3 87935366 87935473 -71664310 + PB1D7 SINE Alu 1 112 -8 9 1255 429 235 61 0 chr3 87935531 87935629 -71664154 + ID_B1 SINE B4 104 207 -17 9 1255 947 96 241 13 chr3 87935633 87935791 -71663992 + B2_Mm2 SINE B2 2 195 0 9 1255 560 124 283 0 chr3 87936785 87936898 -71662885 + B1_Mur4 SINE Alu 5 149 -1 9 1255 323 212 12 0 chr3 87936948 87937033 -71662750 + GA-rich Low_complexity Low_complexity 3 88 0 9 1255 1212 167 17 109 chr3 87938280 87938369 -71661414 - ORR1D1 LTR MaLR -100 274 187 9 1255 495 48 0 0 chr3 87938369 87938431 -71661352 + (GA)n Simple_repeat Simple_repeat 1 62 0 9 1255 1212 167 17 109 chr3 87938431 87938643 -71661140 - ORR1D1 LTR MaLR -188 186 1 9 1255 294 29 0 0 chr3 87938685 87938720 -71661063 + (TC)n Simple_repeat Simple_repeat 1 35 0 9 1255 410 121 163 81 chr3 87938722 87938831 -71660952 - B1_Mur3 SINE Alu -16 133 16 9 1255 307 286 229 0 chr3 87938947 87939122 -71660661 - B3 SINE B2 0 216 2 9 1255 356 262 182 15 chr3 87939174 87939306 -71660477 - RSINE1 SINE B4 0 165 12 9 1255 252 0 0 0 chr3 87939327 87939355 -71660428 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 9 1255 1150 52 0 0 chr3 87939355 87939490 -71660293 - B1_Mm SINE Alu -11 136 2 9 1255 227 232 174 31 chr3 87939630 87939728 -71660055 + Lx4B LINE L1 6947 7058 0 9 1255 1213 62 0 0 chr3 87939739 87939885 -71659898 + B1_Mus2 SINE Alu 2 147 0 9 1255 1003 144 30 55 chr3 87939905 87940104 -71659679 + B2_Mm2 SINE B2 1 194 -1 9 1255 265 274 60 0 chr3 87940136 87940220 -71659563 + PB1D10 SINE Alu 23 111 -6 9 1255 365 233 285 24 chr3 87940371 87940494 -71659289 + RSINE1 SINE B4 3 157 -8 9 1255 935 90 0 0 chr3 87940498 87940632 -71659151 + B1_Mus1 SINE Alu 15 148 0 9 1255 1381 82 33 0 chr3 87940686 87940870 -71658913 + B2_Mm1a SINE B2 1 190 -3 9 1255 231 61 0 0 chr3 87940876 87940909 -71658874 + (A)n Simple_repeat Simple_repeat 1 33 0 9 1255 292 164 178 0 chr3 87940909 87940982 -71658801 + PB1D9 SINE Alu 33 118 -2 9 1255 206 255 0 19 chr3 87941024 87941076 -71658707 - MIR SINE MIR -157 105 55 9 1255 468 181 43 0 chr3 87941341 87941435 -71658348 - B1_Mur2 SINE Alu -9 140 43 9 1255 250 268 0 0 chr3 87941548 87941604 -71658179 + ID4_ SINE ID 2 57 -26 9 1255 315 71 0 0 chr3 87941636 87941678 -71658105 + (GA)n Simple_repeat Simple_repeat 2 43 0 9 1255 392 233 63 55 chr3 87941700 87941827 -71657956 + RSINE1 SINE B4 2 129 -36 9 1255 33 0 0 0 chr3 87941841 87941874 -71657909 + AT_rich Low_complexity Low_complexity 1 33 0 9 1255 713 172 89 7 chr3 87941880 87942015 -71657768 + B1_Mus1 SINE Alu 3 148 0 9 1255 345 308 44 15 chr3 87943708 87943843 -71655940 + RSINE1 SINE B4 8 146 -19 9 1255 28 0 0 0 chr3 87946415 87946443 -71653340 + GC_rich Low_complexity Low_complexity 1 28 0 9 1256 736 152 8 0 chr3 87950473 87950598 -71649185 + B1_Mus1 SINE Alu 2 127 -21 9 1256 234 62 0 0 chr3 87950599 87950631 -71649152 + (GGGAGA)n Simple_repeat Simple_repeat 4 35 0 9 1256 204 67 0 0 chr3 87950625 87950655 -71649128 + (CAGG)n Simple_repeat Simple_repeat 2 31 0 9 1256 237 98 0 0 chr3 87950722 87950763 -71649020 + (TG)n Simple_repeat Simple_repeat 1 41 0 9 1256 315 0 0 0 chr3 87950763 87950797 -71648986 + (GA)n Simple_repeat Simple_repeat 1 35 0 9 1256 352 186 0 110 chr3 87955382 87955491 -71644292 + MT2B LTR ERVL 168 264 -337 9 1256 765 117 0 0 chr3 87955393 87955513 -71644270 + B1_Mus2 SINE Alu 15 134 -13 9 1256 539 162 68 39 chr3 87956741 87956844 -71642939 + B1_Mur4 SINE Alu 3 108 -42 9 1256 705 151 8 32 chr3 87956835 87956958 -71642825 + B1_Mur4 SINE Alu 30 149 -1 9 1256 892 236 11 21 chr3 87957712 87957898 -71641885 - B3 SINE B2 -32 184 1 9 1256 216 0 0 0 chr3 87957931 87957955 -71641828 + (TCCA)n Simple_repeat Simple_repeat 1 24 0 9 1256 333 0 0 0 chr3 87957955 87957992 -71641791 + (TTTA)n Simple_repeat Simple_repeat 4 40 0 9 1256 1577 48 11 0 chr3 87957997 87958185 -71641598 - B2_Mm1a SINE B2 -3 190 1 1 1256 333 0 0 0 chr3 87958189 87958226 -71641557 + (TTTA)n Simple_repeat Simple_repeat 1 37 0 1 1256 502 218 45 9 chr3 87958228 87958339 -71641444 - PB1D9 SINE Alu -1 119 5 1 1256 282 327 63 9 chr3 87958546 87958657 -71641126 + PB1D10 SINE Alu 1 117 0 1 1256 1174 49 7 7 chr3 87958661 87958806 -71640977 + B1_Mus2 SINE Alu 2 146 -1 1 1256 228 227 82 118 chr3 87958829 87958914 -71640869 + BC1_Mm scRNA scRNA 1 82 -70 1 1256 723 193 117 22 chr3 87960908 87961088 -71638695 + B3 SINE B2 15 211 -5 1 1256 246 200 192 39 chr3 87961101 87961179 -71638604 + MT2B LTR ERVL 169 258 -343 1 1256 561 111 242 0 chr3 87961111 87961210 -71638573 + B1_Mur3 SINE Alu 14 136 -13 1 1256 198 0 0 0 chr3 87961221 87961243 -71638540 + (TTAA)n Simple_repeat Simple_repeat 3 24 0 1 1256 567 236 104 28 chr3 87961260 87961404 -71638379 + RSINE1 SINE B4 4 158 -7 1 1256 519 148 0 0 chr3 87961425 87961513 -71638270 + (TAGA)n Simple_repeat Simple_repeat 2 89 0 1 1256 837 193 21 0 chr3 87963638 87963783 -71636000 - B1_Mur1 SINE Alu 0 149 2 1 1256 240 375 21 59 chr3 87964388 87964575 -71635208 + MIRc SINE MIR 85 264 -4 1 1256 979 262 4 22 chr3 87967159 87967385 -71632398 + ID_B1 SINE B4 2 223 -1 1 1256 663 231 160 5 chr3 87967387 87967574 -71632209 + B3 SINE B2 1 216 0 1 1256 305 322 71 13 chr3 87969102 87969256 -71630527 + MIRm SINE MIR 17 179 -97 1 1256 759 200 273 0 chr3 87969295 87969460 -71630323 + B3 SINE B2 1 210 -6 1 1256 1231 54 0 0 chr3 87969483 87969631 -71630152 + B1_Mus1 SINE Alu 1 148 0 1 1256 252 86 0 0 chr3 87969633 87969668 -71630115 + (GAAA)n Simple_repeat Simple_repeat 2 36 0 1 1256 845 176 42 7 chr3 87969741 87969884 -71629899 + B1_Mur1 SINE Alu 1 148 -1 1 1256 717 84 0 27 chr3 87970936 87971046 -71628737 - B1_Mm SINE Alu 0 147 41 1 1256 1206 68 0 0 chr3 87971128 87971275 -71628508 + B1_Mus1 SINE Alu 2 148 0 1 1256 238 327 0 0 chr3 87971521 87971622 -71628161 + (CAG)n Simple_repeat Simple_repeat 3 103 0 1 1256 249 33 0 0 chr3 87972712 87972742 -71627041 + (TTA)n Simple_repeat Simple_repeat 3 32 0 1 1256 218 245 0 0 chr3 87974790 87974839 -71624944 + L2c LINE L2 3337 3385 -2 1 1256 219 114 0 0 chr3 87975023 87975058 -71624725 + (TG)n Simple_repeat Simple_repeat 2 36 0 1 1256 180 317 12 24 chr3 87976535 87976619 -71623164 + MIRc SINE MIR 99 181 -87 1 1256 307 267 116 0 chr3 87976774 87976860 -71622923 + ID_B1 SINE B4 80 175 -49 1 1256 262 298 137 11 chr3 87976781 87976876 -71622907 + PB1D10 SINE Alu 6 112 -5 1 1256 467 204 23 0 chr3 87977503 87977591 -71622192 + B3 SINE B2 114 203 -13 1 1256 185 295 79 59 chr3 87978091 87978192 -71621591 - L2b LINE L2 -186 3189 3087 1 1256 438 279 16 0 chr3 87978443 87978565 -71621218 + ID_B1 SINE B4 95 218 -6 1 1256 477 0 0 0 chr3 87978665 87978718 -71621065 + (TCCC)n Simple_repeat Simple_repeat 4 56 0 1 1256 258 305 125 37 chr3 87978722 87978734 -71621049 - B4 SINE B4 -63 229 173 1 1256 360 234 222 9 chr3 87978734 87978842 -71620941 - B1_Mur4 SINE Alu -9 141 11 1 1256 232 311 125 10 chr3 87978847 87978951 -71620832 - RCHARR1 DNA MER1_type 0 974 859 1 1256 246 337 194 0 chr3 87979002 87979100 -71620683 - B4A SINE B4 -92 200 84 1 1256 641 251 64 25 chr3 87979250 87979314 -71620469 - RCHARR1 DNA MER1_type -176 798 738 1 1256 655 172 86 43 chr3 87979314 87979454 -71620329 + B1_Mur2 SINE Alu 2 147 -2 1 1256 641 251 64 25 chr3 87979454 87979588 -71620195 - RCHARR1 DNA MER1_type -237 737 592 1 1256 327 232 33 44 chr3 87979588 87979678 -71620105 + MTD LTR MaLR 1 89 -307 1 1256 1087 69 28 0 chr3 87980015 87980159 -71619624 - B1_Mus1 SINE Alu 0 148 1 1 1256 3945 27 9 0 chr3 87980189 87980638 -71619145 - L1Md_T LINE L1 0 6582 6130 1 1256 418 248 136 0 chr3 87980641 87980766 -71619017 - B3A SINE B2 -5 193 52 1 1256 527 155 0 0 chr3 87980823 87980907 -71618876 - B3 SINE B2 -115 101 18 1 1256 21 0 0 0 chr3 87980972 87980993 -71618790 + AT_rich Low_complexity Low_complexity 1 21 0 1 1256 1319 91 32 5 chr3 87982376 87982563 -71617220 + B2_Mm2 SINE B2 1 192 -3 1 1256 210 71 0 0 chr3 87982583 87982611 -71617172 + (TAAA)n Simple_repeat Simple_repeat 3 30 0 1 1256 216 0 0 0 chr3 87982741 87982765 -71617018 + (A)n Simple_repeat Simple_repeat 1 24 0 1 1256 1031 70 70 0 chr3 87983252 87983410 -71616373 - B2_Mm2 SINE B2 0 195 27 1 1256 1176 22 22 0 chr3 87983427 87983562 -71616221 - B1_Mm SINE Alu -8 139 2 1 1256 753 258 10 50 chr3 87983929 87984129 -71615654 - MTD LTR MaLR -14 405 214 1 1256 951 223 48 14 chr3 87984160 87984369 -71615414 + B3 SINE B2 1 216 0 1 1256 741 253 22 16 chr3 87984388 87984573 -71615210 - B3A SINE B2 -11 187 2 1 1256 360 111 0 0 chr3 87984581 87984635 -71615148 + (TTTC)n Simple_repeat Simple_repeat 2 55 0 1 1256 353 305 0 0 chr3 87984663 87984745 -71615038 - ID4_ SINE ID -1 82 1 1 1256 231 213 0 0 chr3 87984752 87984799 -71614984 - MTD LTR MaLR -321 98 52 1 1256 220 147 0 0 chr3 87984908 87984942 -71614841 + PB1D10 SINE Alu 62 95 -22 1 1256 1005 229 25 10 chr3 87984961 87985164 -71614619 + B3 SINE B2 2 207 -9 1 1256 423 0 0 0 chr3 87985165 87985212 -71614571 + (GA)n Simple_repeat Simple_repeat 2 48 0 1 1256 525 227 62 0 chr3 87985667 87985788 -71613995 - B3 SINE B2 0 216 88 1 1256 1641 206 32 92 chr3 87985788 87986280 -71613503 - RMER4A LTR ERVK -3 463 1 1 1256 418 200 67 0 chr3 87986280 87986368 -71613415 - B3A SINE B2 -103 95 2 1 1256 538 245 20 27 chr3 87986933 87987080 -71612703 - B1_Mus2 SINE Alu -1 146 1 1 1256 585 209 92 8 chr3 87987340 87987470 -71612313 + B1_Mur2 SINE Alu 5 145 -4 1 1256 667 258 64 5 chr3 87987511 87987698 -71612085 + B3A SINE B2 1 198 0 1 1256 1195 95 61 11 chr3 87987752 87987933 -71611850 + B2_Mm2 SINE B2 1 190 -5 1 1256 564 300 71 23 chr3 87988063 87988313 -71611470 + MTD LTR MaLR 1 240 -179 1 1256 784 185 20 0 chr3 87988326 87988472 -71611311 + B1_Mur3 SINE Alu 1 149 0 1 1256 200 159 0 43 chr3 87988472 87988518 -71611265 + GA-rich Low_complexity Low_complexity 2 45 0 1 1256 445 271 22 44 chr3 87989021 87989156 -71610627 + RSINE1 SINE B4 1 132 -33 1 1256 441 129 0 0 chr3 87989160 87989230 -71610553 + (CA)n Simple_repeat Simple_repeat 1 70 0 1 1256 495 219 127 44 chr3 87989232 87989390 -71610393 + B3A SINE B2 17 187 -11 1 1256 926 237 82 5 chr3 87989493 87989688 -71610095 - B3 SINE B2 -2 214 5 1 1256 462 164 133 33 chr3 87989890 87990010 -71609773 - B1_Mur2 SINE Alu 0 149 18 1 1256 228 134 84 12 chr3 87990018 87990101 -71609682 + (TA)n Simple_repeat Simple_repeat 2 90 0 1 1256 209 137 0 89 chr3 87990246 87990302 -71609481 + T-rich Low_complexity Low_complexity 4 54 0 1 1256 1141 77 0 0 chr3 87990304 87990447 -71609336 - B1_Mus1 SINE Alu -1 147 5 1 1256 1007 106 24 105 chr3 87990450 87990660 -71609123 - B2_Mm2 SINE B2 0 195 3 1 1256 466 208 66 0 chr3 87990934 87991040 -71608743 + PB1D7 SINE Alu 8 120 0 1 1256 549 268 92 23 chr3 87991052 87991199 -71608584 + B3A SINE B2 1 152 -43 1 1256 378 61 0 0 chr3 87991199 87991248 -71608535 + (CA)n Simple_repeat Simple_repeat 1 49 0 1 1256 312 274 98 67 chr3 87991248 87991264 -71608519 + B2_Mm2 SINE B2 153 169 -26 1 1256 2106 170 22 37 chr3 87991284 87991687 -71608096 - MTC LTR MaLR 0 421 25 1 1256 459 0 0 0 chr3 87991724 87991775 -71608008 + (CA)n Simple_repeat Simple_repeat 2 52 0 1 1256 996 230 71 46 chr3 87991787 87992070 -71607713 + B4A SINE B4 3 292 0 1 1256 1740 194 18 61 chr3 87992141 87992405 -71607378 - ORR1D1 LTR MaLR 0 374 131 1 1256 1965 107 14 114 chr3 87992405 87992710 -71607073 + ORR1A3 LTR MaLR 3 285 -41 1 1256 1094 70 0 60 chr3 87992710 87992861 -71606922 + B1_Mus1 SINE Alu 1 142 -6 1 1256 279 0 0 0 chr3 87992863 87992894 -71606889 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1 1256 1965 107 14 114 chr3 87992894 87992945 -71606838 + ORR1A3 LTR MaLR 286 326 0 1 1256 1740 194 18 61 chr3 87992945 87993071 -71606712 - ORR1D1 LTR MaLR -244 130 4 1 1256 533 258 8 0 chr3 87993405 87993525 -71606258 + RSINE1 SINE B4 39 159 -6 1 1256 706 200 25 94 chr3 87993554 87993714 -71606069 - B1_Mur1 SINE Alu 0 149 1 1 1256 1126 199 19 5 chr3 87993727 87993934 -71605849 - B3 SINE B2 -6 210 1 1 1256 1387 75 21 0 chr3 87994527 87994714 -71605069 - B2_Mm1t SINE B2 -1 192 2 1 1256 655 195 218 56 chr3 87994772 87994951 -71604832 - B3 SINE B2 -8 208 1 1 1256 442 280 48 0 chr3 87995569 87995694 -71604089 + B1F SINE Alu 18 148 -1 1 1256 586 275 14 0 chr3 87996089 87996227 -71603556 + ID_B1 SINE B4 78 217 -7 1 1256 233 316 42 10 chr3 87997034 87997130 -71602653 - L2b LINE L2 -3 3372 3274 1 1256 1713 174 148 9 chr3 87997265 87997602 -71602181 - ORR1C2 LTR MaLR 0 384 1 1 1256 1993 209 17 14 chr3 87997603 87998021 -71601762 - MTD LTR MaLR 0 419 1 1 1256 441 0 0 0 chr3 87998109 87998158 -71601625 + (CCCTA)n Simple_repeat Simple_repeat 4 52 0 1 1256 1085 121 0 6 chr3 87998895 87999070 -71600713 + (TTTCC)n Simple_repeat Simple_repeat 3 176 0 1 1256 375 154 0 0 chr3 87999070 87999135 -71600648 + CT-rich Low_complexity Low_complexity 6 70 0 1 1256 1157 75 7 0 chr3 87999139 87999285 -71600498 - B1_Mus1 SINE Alu 0 148 2 1 1256 358 288 35 41 chr3 88000190 88000283 -71599500 - L1MEg LINE L1 -4113 1971 1878 1 1256 1202 68 0 0 chr3 88000283 88000430 -71599353 - B1_Mus1 SINE Alu 0 148 2 2 1256 358 288 35 41 chr3 88000430 88000481 -71599302 - L1MEg LINE L1 -4207 1877 1829 1 1256 274 250 14 38 chr3 88000501 88000713 -71599070 + (TG)n Simple_repeat Simple_repeat 1 207 0 3 1256 765 252 43 61 chr3 88000727 88001006 -71598777 - B4A SINE B4 0 292 19 4 1256 1866 165 46 6 chr3 88001008 88001374 -71598409 - MTC LTR MaLR -8 413 33 5 1256 396 293 97 8 chr3 88003086 88003220 -71596563 - B1F2 SINE Alu 0 149 4 6 1256 572 253 20 20 chr3 88003319 88003468 -71596315 + ID_B1 SINE B4 76 224 0 7 1256 299 226 97 0 chr3 88003533 88003595 -71596188 + ID4_ SINE ID 1 68 -15 8 1256 210 143 0 0 chr3 88003626 88003661 -71596122 + (GGA)n Simple_repeat Simple_repeat 2 36 0 9 1256 262 193 53 0 chr3 88003695 88003752 -71596031 + PB1D7 SINE Alu 47 106 -14 1 1256 257 247 136 0 chr3 88003826 88003907 -71595876 + BC1_Mm scRNA scRNA 2 93 -59 1 1256 207 0 0 0 chr3 88003917 88003940 -71595843 + (T)n Simple_repeat Simple_repeat 1 23 0 1 1256 384 22 0 0 chr3 88004035 88004080 -71595703 + (GA)n Simple_repeat Simple_repeat 2 46 0 1 1256 183 42 0 0 chr3 88005086 88005110 -71594673 + (CGAG)n Simple_repeat Simple_repeat 2 25 0 1 1256 201 139 0 44 chr3 88005285 88005330 -71594453 + T-rich Low_complexity Low_complexity 2 44 0 1 1256 203 175 0 0 chr3 88007327 88007367 -71592416 + T-rich Low_complexity Low_complexity 1 40 0 1 1256 410 250 43 22 chr3 88007648 88007787 -71591996 + RSINE1 SINE B4 2 143 -22 1 1256 396 0 0 0 chr3 88010946 88010990 -71588793 + (CA)n Simple_repeat Simple_repeat 2 45 0 1 1256 307 267 0 26 chr3 88013049 88013126 -71586657 - PB1D10 SINE Alu -42 75 1 1 1256 235 346 0 0 chr3 88014810 88014888 -71584895 + ID4 SINE ID 3 80 -3 2 1256 485 250 48 35 chr3 88016467 88016612 -71583171 + B1F SINE Alu 1 147 -2 2 1256 223 26 77 0 chr3 88016779 88016818 -71582965 + (GAAAA)n Simple_repeat Simple_repeat 1 42 0 2 1256 420 71 0 0 chr3 88016830 88016886 -71582897 + (TAAA)n Simple_repeat Simple_repeat 2 57 0 2 1256 213 118 29 0 chr3 88017956 88017990 -71581793 - PB1D7 SINE Alu -65 55 21 2 1256 245 128 0 0 chr3 88021300 88021339 -71578444 + B1_Mus2 SINE Alu 83 121 -26 2 1256 419 283 0 0 chr3 88021349 88021448 -71578335 + ID_B1 SINE B4 94 192 -32 2 1256 450 0 0 0 chr3 88021459 88021509 -71578274 + (CA)n Simple_repeat Simple_repeat 2 51 0 2 1256 546 43 0 0 chr3 88021912 88021981 -71577802 + (TCC)n Simple_repeat Simple_repeat 2 70 0 2 1256 467 228 26 17 chr3 88022024 88022140 -71577643 - RSINE1 SINE B4 -38 127 11 2 1256 323 216 26 0 chr3 88022153 88022236 -71577547 - B1F SINE Alu -1 119 27 3 1256 665 200 162 12 chr3 88022437 88022604 -71577179 - B3 SINE B2 -24 192 1 3 1256 630 176 8 48 chr3 88022777 88022902 -71576881 + PB1D9 SINE Alu 1 120 0 3 1256 678 178 0 0 chr3 88022902 88023031 -71576752 + GA-rich Low_complexity Low_complexity 1 129 0 3 1256 477 238 135 0 chr3 88023352 88023478 -71576305 - B1F SINE Alu -6 143 1 3 1256 450 270 36 0 chr3 88023585 88023696 -71576087 + PB1D10 SINE Alu 1 115 -2 3 1256 362 118 42 208 chr3 88027345 88027441 -71572342 - B1_Mus2 SINE Alu -50 97 18 3 1256 243 0 0 0 chr3 88027442 88027469 -71572314 + (CCA)n Simple_repeat Simple_repeat 2 28 0 3 1256 1021 128 0 0 chr3 88027514 88027662 -71572121 + B1_Mur4 SINE Alu 1 148 -2 3 1256 388 231 541 20 chr3 88027924 88028066 -71571717 - B3 SINE B2 0 216 1 3 1256 856 200 0 0 chr3 88030405 88030550 -71569233 + B1_Mur4 SINE Alu 1 145 -5 4 1256 218 250 149 28 chr3 88030588 88030695 -71569088 + PB1D7 SINE Alu 1 120 0 4 1256 887 200 0 0 chr3 88030700 88030845 -71568938 + B1_Mur1 SINE Alu 5 149 0 4 1256 655 271 59 20 chr3 88030869 88031072 -71568711 + ID_B1 SINE B4 14 224 0 4 1256 209 50 0 91 chr3 88031313 88031357 -71568426 + (T)n Simple_repeat Simple_repeat 1 40 0 4 1256 667 231 20 13 chr3 88031582 88031731 -71568052 + RSINE1 SINE B4 1 150 -15 4 1256 504 0 0 0 chr3 88032306 88032362 -71567421 + (TG)n Simple_repeat Simple_repeat 1 56 0 4 1256 351 0 0 0 chr3 88033443 88033482 -71566301 + (TG)n Simple_repeat Simple_repeat 1 39 0 4 1256 364 302 19 0 chr3 88033485 88033591 -71566192 - PB1D10 SINE Alu -8 109 2 4 1256 227 322 46 0 chr3 88036090 88036177 -71563606 - MIR SINE MIR -76 132 42 4 1256 234 0 0 0 chr3 88036781 88036807 -71562976 + (A)n Simple_repeat Simple_repeat 1 26 0 5 1256 40 0 0 36 chr3 88038392 88038425 -71561358 + AT_rich Low_complexity Low_complexity 1 33 0 5 1256 504 193 252 0 chr3 88038425 88038544 -71561239 - B1_Mur3 SINE Alu 0 149 1 5 1256 40 0 0 36 chr3 88038544 88038565 -71561218 + AT_rich Low_complexity Low_complexity 1 20 0 5 1256 731 189 27 47 chr3 88038575 88038725 -71561058 + B1_Mur1 SINE Alu 3 149 0 5 1256 278 204 21 21 chr3 88038904 88038999 -71560784 + GA-rich Low_complexity Low_complexity 4 98 0 5 1256 320 326 19 65 chr3 88039419 88039573 -71560210 + MIRb SINE MIR 116 262 -6 5 1256 235 181 28 0 chr3 88040066 88040138 -71559645 + G-rich Low_complexity Low_complexity 5 78 0 5 1256 495 0 0 0 chr3 88042506 88042561 -71557222 + (GA)n Simple_repeat Simple_repeat 1 55 0 5 1256 364 246 237 0 chr3 88043776 88043894 -71555889 - B1_Mm SINE Alu 0 147 2 5 1256 305 317 19 29 chr3 88043894 88043998 -71555785 - L1M5 LINE L1 -2961 3185 3083 6 1256 762 153 0 0 chr3 88043999 88044123 -71555660 - B1_Mur4 SINE Alu -1 149 26 6 1256 306 0 0 0 chr3 88045944 88045978 -71553805 + (T)n Simple_repeat Simple_repeat 1 34 0 6 1256 214 293 0 0 chr3 88050100 88050158 -71549625 + ID4_ SINE ID 15 72 -11 6 1256 924 79 50 0 chr3 88050381 88050520 -71549263 - B1_Mus1 SINE Alu 0 148 3 6 1256 235 224 103 0 chr3 88050420 88050536 -71549247 - ORR1B1-int LTR MaLR -755 754 627 6 1256 312 127 0 0 chr3 88052786 88052841 -71546942 + (TG)n Simple_repeat Simple_repeat 1 55 0 6 1256 665 302 29 10 chr3 88052869 88053076 -71546707 - B4A SINE B4 -81 211 1 6 1256 328 287 49 10 chr3 88053374 88053476 -71546307 - PB1D7 SINE Alu -2 118 13 6 1256 1254 125 22 0 chr3 88053702 88053886 -71545897 + B2_Mm2 SINE B2 2 189 -6 6 1256 757 179 13 65 chr3 88053897 88054039 -71545744 + B1_Mur2 SINE Alu 2 137 -12 7 1256 180 0 0 0 chr3 88054039 88054059 -71545724 + (CAAA)n Simple_repeat Simple_repeat 3 22 0 7 1256 757 179 13 65 chr3 88054059 88054071 -71545712 + B1_Mur2 SINE Alu 138 148 -1 7 1256 360 0 0 0 chr3 88054598 88054638 -71545145 + (CA)n Simple_repeat Simple_repeat 2 41 0 7 1256 821 110 158 0 chr3 88055258 88055385 -71544398 - B1_Mur2 SINE Alu 0 149 3 7 1256 451 288 83 0 chr3 88055585 88055717 -71544066 + ID_B1 SINE B4 82 224 0 7 1256 229 356 51 17 chr3 88055782 88055899 -71543884 + MIRm SINE MIR 45 165 -111 7 1256 1146 56 21 0 chr3 88056138 88056281 -71543502 - B1_Mur4 SINE Alu 0 150 5 7 1256 374 324 27 0 chr3 88056334 88056445 -71543338 + PB1D10 SINE Alu 2 115 -2 7 1256 366 300 75 17 chr3 88056461 88056634 -71543149 + MIR3 SINE MIR 13 195 -13 7 1256 249 33 0 0 chr3 88057425 88057455 -71542328 + (TTTG)n Simple_repeat Simple_repeat 1 30 0 7 1256 550 285 71 107 chr3 88057455 88057616 -71542167 - ID_B1 SINE B4 -78 214 58 8 1256 207 0 0 0 chr3 88059007 88059030 -71540753 + (TTG)n Simple_repeat Simple_repeat 2 24 0 8 1256 1242 108 28 0 chr3 88059030 88059206 -71540577 - B2_Mm2 SINE B2 -14 181 1 8 1256 260 273 0 0 chr3 88059838 88059893 -71539890 - L2c LINE L2 0 3387 3333 8 1256 246 174 0 0 chr3 88060692 88060738 -71539045 + CT-rich Low_complexity Low_complexity 2 47 0 8 1256 373 267 230 14 chr3 88060750 88060898 -71538885 + MIRb SINE MIR 81 260 -2 8 1256 407 269 26 61 chr3 88061054 88061169 -71538614 - PB1D10 SINE Alu -1 116 6 8 1256 495 235 20 0 chr3 88061185 88061300 -71538483 - PB1D7 SINE Alu -1 119 3 8 1256 1246 78 12 6 chr3 88061312 88061479 -71538304 - B2_Mm2 SINE B2 -14 181 14 8 1256 422 296 137 7 chr3 88061514 88061660 -71538123 - L2b LINE L2 -1 3374 3210 8 1256 529 236 61 30 chr3 88062564 88062695 -71537088 + RSINE1 SINE B4 14 148 -17 9 1256 22 0 0 0 chr3 88062707 88062729 -71537054 + AT_rich Low_complexity Low_complexity 1 22 0 9 1256 497 202 17 52 chr3 88063050 88063165 -71536618 - B1_Mm SINE Alu -6 141 31 9 1256 238 189 43 22 chr3 88063174 88063246 -71536537 + T-rich Low_complexity Low_complexity 24 97 0 9 1256 924 127 14 21 chr3 88063246 88063391 -71536392 - B1_Mus1 SINE Alu 0 148 5 9 1256 238 189 43 22 chr3 88063391 88063410 -71536373 + T-rich Low_complexity Low_complexity 5 23 0 9 1256 558 81 11 0 chr3 88063744 88063831 -71535952 - Lx2 LINE L1 0 6997 6910 9 1256 1673 26 0 15 chr3 88063844 88064040 -71535743 - B2_Mm1a SINE B2 0 193 1 9 1256 247 143 0 0 chr3 88064102 88064137 -71535646 - PB1D7 SINE Alu -9 111 77 9 1256 226 233 196 65 chr3 88064134 88064226 -71535557 + B2_Mm2 SINE B2 80 183 -12 9 1256 467 191 0 0 chr3 88064234 88064309 -71535474 + B1_Mur4 SINE Alu 65 139 -11 1 1256 243 0 0 0 chr3 88064309 88064336 -71535447 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 1256 223 208 0 0 chr3 88064362 88064410 -71535373 - B1F2 SINE Alu -89 60 13 1 1256 217 274 0 0 chr3 88064410 88064424 -71535359 - ID_B1 SINE B4 -83 141 80 1 1256 373 300 9 52 chr3 88064504 88064620 -71535163 + PB1D10 SINE Alu 7 117 0 1 1256 1375 77 39 0 chr3 88064677 88064859 -71534924 + B2_Mm2 SINE B2 2 190 -5 1 1256 690 206 14 14 chr3 88064863 88065011 -71534772 + B1_Mur2 SINE Alu 2 149 0 1 1256 768 266 49 0 chr3 88065017 88065201 -71534582 + ID_B1 SINE B4 1 193 -31 1 1256 1713 186 7 75 chr3 88065552 88065964 -71533819 - ORR1C2 LTR MaLR 0 384 1 1 1256 201 297 45 98 chr3 88066095 88066207 -71533576 - MER5A DNA MER1_type -8 181 76 1 1256 236 200 40 0 chr3 88066569 88066619 -71533164 + B1F SINE Alu 33 84 -65 1 1256 299 85 0 21 chr3 88066655 88066703 -71533080 + (TATG)n Simple_repeat Simple_repeat 4 50 0 1 1256 633 252 7 0 chr3 88066706 88066849 -71532934 - RSINE1 SINE B4 -19 146 3 1 1256 299 300 133 0 chr3 88066857 88066947 -71532836 - PB1D10 SINE Alu -6 111 10 1 1256 1338 62 0 81 chr3 88066972 88067075 -71532708 + B2_Mm2 SINE B2 2 104 -91 1 1256 2397 104 95 65 chr3 88067075 88067536 -71532247 - IAPLTR2_Mm LTR ERVK 0 475 1 1 1256 1338 62 0 81 chr3 88067536 88067609 -71532174 + B2_Mm2 SINE B2 105 170 -25 1 1256 252 0 0 0 chr3 88067617 88067645 -71532138 + (GTTTG)n Simple_repeat Simple_repeat 2 29 0 1 1256 1233 41 0 7 chr3 88067645 88067783 -71532000 - B1_Mm SINE Alu -9 138 1 1 1256 1338 62 0 81 chr3 88067783 88067816 -71531967 + B2_Mm2 SINE B2 171 195 0 1 1256 1668 37 0 0 chr3 88067821 88068010 -71531773 + B2_Mm1t SINE B2 1 189 -4 1 1256 562 260 173 5 chr3 88068012 88068209 -71531574 + RMER21B LTR ERV1 338 567 -275 1 1256 2001 154 14 123 chr3 88068396 88068460 -71531323 - ORR1C1 LTR MaLR -2 376 340 1 1256 1203 34 14 0 chr3 88068460 88068606 -71531177 - B1_Mus1 SINE Alu 0 148 1 1 1256 2001 154 14 123 chr3 88068606 88068963 -71530820 - ORR1C1 LTR MaLR -39 339 1 1 1256 321 336 9 0 chr3 88069056 88069172 -71530611 + PB1D10 SINE Alu 1 117 0 1 1256 243 254 0 118 chr3 88069175 88069251 -71530532 + tRNA-Ala-GCY_ tRNA tRNA 1 67 -8 1 1256 335 141 30 30 chr3 88069985 88070039 -71529744 - MTD LTR MaLR 0 419 366 1 1256 678 126 11 2 chr3 88070039 88070155 -71529628 + B2_Mm2 SINE B2 1 120 -78 1 1256 1368 196 39 0 chr3 88070139 88070394 -71529389 - MTD LTR MaLR -46 373 109 1 1256 694 65 32 0 chr3 88070519 88070612 -71529171 - B2_Mm2 SINE B2 -8 187 92 1 1256 8061 43 40 4 chr3 88070612 88071664 -71528119 - MTA_Mm-int LTR MaLR -8 1090 1 1 1256 3466 11 37 0 chr3 88071664 88072046 -71527737 - MTA_Mm LTR MaLR 0 396 1 1 1256 1204 48 0 14 chr3 88072276 88072423 -71527360 - B1_Mus2 SINE Alu -2 145 1 1 1256 3159 124 30 2 chr3 88072625 88073125 -71526658 - RLTR28 LTR ERVL -10 514 1 1 1256 831 212 67 26 chr3 88073263 88073416 -71526367 + B3 SINE B2 1 162 -54 1 1256 441 0 0 0 chr3 88073416 88073465 -71526318 + (CA)n Simple_repeat Simple_repeat 1 49 0 1 1256 831 212 67 26 chr3 88073465 88073505 -71526278 + B3 SINE B2 163 202 -14 1 1256 180 0 0 0 chr3 88073734 88073754 -71526029 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 1 1256 1121 52 7 0 chr3 88073754 88073889 -71525894 - B1_Mus2 SINE Alu -11 136 1 1 1256 1649 192 128 22 chr3 88073993 88074080 -71525703 + RMER15 LTR ERVL 1 87 -488 1 1256 1152 59 0 0 chr3 88074080 88074215 -71525568 + B1_Mm SINE Alu 2 136 -11 1 1256 817 37 0 18 chr3 88074215 88074326 -71525457 + (GAAA)n Simple_repeat Simple_repeat 3 111 0 1 1256 540 0 0 0 chr3 88074326 88074386 -71525397 + (GAGAA)n Simple_repeat Simple_repeat 1 60 0 1 1256 1649 192 128 22 chr3 88074386 88074664 -71525119 + RMER15 LTR ERVL 88 405 -170 1 1256 1932 111 75 54 chr3 88074667 88075040 -71524743 - RLTR28 LTR ERVL -28 496 116 1 1256 490 262 10 0 chr3 88075028 88075131 -71524652 - RSINE1 SINE B4 -58 107 4 1 1256 1447 59 21 0 chr3 88075189 88075375 -71524408 - B2_Mm2 SINE B2 -4 191 2 1 1256 511 288 50 0 chr3 88075756 88075895 -71523888 - B1_Mur1 SINE Alu -2 147 2 1 1256 1126 107 10 60 chr3 88076003 88076202 -71523581 + B2_Mm1t SINE B2 2 190 -3 1 1256 473 217 20 15 chr3 88076244 88076353 -71523430 + MTD LTR MaLR 1 110 -311 1 1256 2327 123 51 81 chr3 88076353 88076580 -71523203 - MTC LTR MaLR 0 421 211 1 1256 1630 42 5 0 chr3 88076580 88076772 -71523011 - B2_Mm1t SINE B2 0 193 1 1 1256 2327 123 51 81 chr3 88076772 88076978 -71522805 - MTC LTR MaLR -211 210 1 1 1256 384 288 16 56 chr3 88076978 88076993 -71522790 + MTD LTR MaLR 111 120 -301 1 1256 192 77 0 0 chr3 88077064 88077090 -71522693 + (TTTTC)n Simple_repeat Simple_repeat 3 28 0 1 1256 1049 90 14 0 chr3 88077090 88077235 -71522548 - B1_Mm SINE Alu 0 147 1 1 1256 1203 93 0 12 chr3 88077460 88077624 -71522159 + B2_Mm2 SINE B2 1 162 -33 1 1256 468 0 0 0 chr3 88077627 88077679 -71522104 + (TAAA)n Simple_repeat Simple_repeat 4 55 0 1 1256 770 260 107 16 chr3 88077795 88078066 -71521717 + MTD LTR MaLR 75 379 0 1 1256 863 199 51 0 chr3 88078068 88078244 -71521539 - B3 SINE B2 -30 186 2 1 1256 624 172 7 113 chr3 88078945 88079096 -71520687 - ID_B1 SINE B4 0 224 90 1 1256 1050 90 0 0 chr3 88078967 88079101 -71520682 - B1_Mus1 SINE Alu -10 138 5 1 1256 1353 73 11 6 chr3 88079126 88079305 -71520478 + B2_Mm1t SINE B2 2 181 -12 1 1256 398 165 14 32 chr3 88079346 88079449 -71520334 + B2_Mm2 SINE B2 47 145 -71 1 1256 1204 68 0 0 chr3 88079661 88079807 -71519976 + B1_Mus2 SINE Alu 2 147 0 1 1256 201 74 0 0 chr3 88079807 88079834 -71519949 + (A)n Simple_repeat Simple_repeat 1 27 0 1 1256 778 235 0 0 chr3 88079889 88080038 -71519745 + B1_Mur1 SINE Alu 1 149 0 1 1256 310 198 0 34 chr3 88080038 88080127 -71519656 + GA-rich Low_complexity Low_complexity 3 88 0 1 1256 705 244 70 5 chr3 88080140 88080325 -71519458 + B3A SINE B2 1 197 -1 1 1257 700 235 6 50 chr3 88080520 88080681 -71519102 + B3 SINE B2 1 154 -62 1 1257 405 233 123 28 chr3 88080964 88081070 -71518713 + PB1D10 SINE Alu 2 117 0 1 1257 1103 62 20 20 chr3 88081113 88081261 -71518522 - B1_Mus1 SINE Alu 0 148 1 1 1257 239 0 32 0 chr3 88081379 88081410 -71518373 + (TG)n Simple_repeat Simple_repeat 1 32 0 1 1257 858 180 77 5 chr3 88081419 88081614 -71518169 - B3 SINE B2 -7 209 1 1 1257 314 174 0 28 chr3 88081709 88081780 -71518003 + CT-rich Low_complexity Low_complexity 5 73 0 1 1257 672 211 13 70 chr3 88081827 88081985 -71517798 - B1_Mur2 SINE Alu 0 149 1 1 1257 512 244 37 96 chr3 88082173 88082280 -71517503 + ID_B1 SINE B4 7 107 -117 1 1257 1886 132 16 54 chr3 88082280 88082706 -71517077 + RMER17C LTR ERVK 1 410 0 1 1257 512 244 37 96 chr3 88082706 88082734 -71517049 + ID_B1 SINE B4 108 134 -90 1 1257 304 320 59 98 chr3 88082787 88082989 -71516794 + MLT1E2 LTR MaLR 1 190 -315 1 1257 1711 26 0 0 chr3 88082989 88083181 -71516602 + B2_Mm1t SINE B2 2 193 0 1 1257 245 328 71 142 chr3 88083181 88083203 -71516580 + MLT1E2 LTR MaLR 191 205 -300 1 1257 665 172 26 0 chr3 88083203 88083319 -71516464 + PB1D9 SINE Alu 2 120 0 1 1257 245 328 71 142 chr3 88083319 88083374 -71516409 + MLT1E2 LTR MaLR 206 261 -244 1 1257 383 125 0 59 chr3 88083363 88083431 -71516352 - B1_Mus2 SINE Alu -2 145 82 1 1257 194 0 0 37 chr3 88083436 88083463 -71516320 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 1 1257 422 186 43 17 chr3 88083478 88083593 -71516190 + Lx3B LINE L1 6854 6971 -2 1 1257 252 0 0 0 chr3 88083595 88083623 -71516160 + (TAA)n Simple_repeat Simple_repeat 1 28 0 1 1257 348 191 15 0 chr3 88083623 88083691 -71516092 + L1MC LINE L1 4870 4938 -1208 1 1257 314 254 78 17 chr3 88083778 88083894 -71515889 + L1MC5 LINE L1 6730 6852 -1109 1 1257 679 251 2 9 chr3 88083917 88084072 -71515711 + B3 SINE B2 62 209 -7 1 1257 237 333 43 85 chr3 88084103 88084244 -71515539 + B1_Mus1 SINE Alu 12 146 -2 1 1257 1062 196 39 5 chr3 88084260 88084465 -71515318 - B3 SINE B2 0 216 5 1 1257 750 135 86 50 chr3 88084536 88084676 -71515107 - B1_Mur4 SINE Alu 0 150 6 1 1257 449 205 51 114 chr3 88084548 88084724 -71515059 - MT2B2 LTR ERVL -299 285 121 1 1257 549 311 56 37 chr3 88084941 88085211 -71514572 + MT2A LTR ERVL 1 275 -258 1 1257 4952 113 57 27 chr3 88085213 88086051 -71513732 + RLTR13D6 LTR ERVK 1 863 -39 1 1257 382 305 59 52 chr3 88086166 88086301 -71513482 + MT2A LTR ERVL 290 425 -108 1 1257 228 186 58 145 chr3 88086293 88086328 -71513455 + MLT2B3 LTR ERVL 479 515 -39 1 1257 444 19 0 0 chr3 88086328 88086381 -71513402 + (CA)n Simple_repeat Simple_repeat 1 53 0 1 1257 228 186 58 145 chr3 88086381 88086414 -71513369 + MLT2B3 LTR ERVL 516 541 -13 1 1257 243 288 0 14 chr3 88086518 88086592 -71513191 + ID4_ SINE ID 1 73 -10 1 1257 1196 48 7 0 chr3 88087277 88087423 -71512360 - B1_Mm SINE Alu 0 147 1 1 1257 626 182 43 28 chr3 88087454 88087595 -71512188 + B1_Mur2 SINE Alu 5 147 -2 1 1257 1359 73 17 6 chr3 88087596 88087775 -71512008 + B2_Mm2 SINE B2 1 181 -14 1 1257 1106 50 58 0 chr3 88087788 88087927 -71511856 - B1_Mm SINE Alu 0 147 1 1 1257 801 251 14 56 chr3 88087964 88088179 -71511604 + B3 SINE B2 1 206 -10 1 1257 1180 36 0 0 chr3 88088189 88088326 -71511457 + B1_Mus1 SINE Alu 1 137 -11 1 1257 216 0 0 0 chr3 88088326 88088350 -71511433 + (CAAAA)n Simple_repeat Simple_repeat 3 26 0 1 1257 3195 52 28 0 chr3 88088678 88089078 -71510705 - RLTR10A LTR ERVK 0 411 1 1 1257 1003 128 209 0 chr3 88089170 88089342 -71510441 - B3 SINE B2 -5 211 4 1 1257 1052 70 128 45 chr3 88089422 88089601 -71510182 - B2_Mm2 SINE B2 0 195 2 1 1257 321 25 0 0 chr3 88089652 88089676 -71510107 + (T)n Simple_repeat Simple_repeat 1 24 0 1 1257 1736 21 0 0 chr3 88089676 88089869 -71509914 - B2_Mm1a SINE B2 0 193 1 1 1257 321 25 0 0 chr3 88089869 88089884 -71509899 + (T)n Simple_repeat Simple_repeat 1 15 0 2 1257 944 236 30 15 chr3 88089896 88090098 -71509685 - B3 SINE B2 -11 205 1 2 1257 982 190 27 21 chr3 88090222 88090410 -71509373 - B3 SINE B2 -1 215 27 2 1257 616 167 158 0 chr3 88090421 88090541 -71509242 - B1_Mus1 SINE Alu 0 148 10 2 1257 515 234 9 20 chr3 88090551 88090667 -71509116 - B1_Mur1 SINE Alu -2 147 29 2 1257 224 297 133 38 chr3 88090667 88090772 -71509011 + PB1D10 SINE Alu 1 115 -2 2 1257 589 246 170 16 chr3 88090790 88090972 -71508811 - ID_B1 SINE B4 -12 212 3 2 1257 366 188 16 0 chr3 88091243 88091307 -71508476 - PB1D10 SINE Alu -31 86 22 2 1257 227 297 149 0 chr3 88091603 88091677 -71508106 + ID_B1 SINE B4 87 171 -53 2 1257 1678 26 0 0 chr3 88091820 88092009 -71507774 + B2_Mm1a SINE B2 1 189 -4 2 1257 209 182 0 0 chr3 88092204 88092237 -71507546 + polypurine Low_complexity Low_complexity 3 35 0 2 1257 277 269 15 0 chr3 88092358 88092425 -71507358 + PB1D9 SINE Alu 1 68 -52 2 1257 2243 88 135 11 chr3 88092448 88092795 -71506988 + RLTR10 LTR ERVK 1 390 0 2 1257 371 200 0 0 chr3 88092832 88092897 -71506886 + B1_Mur1 SINE Alu 77 141 -8 2 1257 683 189 0 0 chr3 88092942 88093064 -71506719 + B3A SINE B2 2 123 -75 2 1257 364 222 12 0 chr3 88093039 88093120 -71506663 + B1_Mur1 SINE Alu 63 144 -5 2 1257 185 111 56 0 chr3 88093199 88093235 -71506548 + T-rich Low_complexity Low_complexity 1 38 0 2 1257 398 295 91 23 chr3 88093236 88093368 -71506415 - B1F SINE Alu -7 142 2 2 1257 1174 82 0 0 chr3 88093493 88093640 -71506143 - B1_Mus2 SINE Alu 0 147 1 2 1257 376 225 33 55 chr3 88093895 88094034 -71505749 + PB1D7 SINE Alu 2 125 -23 2 1257 314 250 62 91 chr3 88094121 88094297 -71505486 + MLT1K LTR MaLR 395 565 -30 2 1257 897 104 14 49 chr3 88094434 88094565 -71505218 + B1_Mur4 SINE Alu 1 127 -23 2 1257 2968 56 48 5 chr3 88094565 88094959 -71504824 + RLTR10A LTR ERVK 1 411 0 2 1257 594 0 0 0 chr3 88095038 88095104 -71504679 + (GA)n Simple_repeat Simple_repeat 2 67 0 2 1257 506 229 96 30 chr3 88095268 88095403 -71504380 + ID_B1 SINE B4 43 186 -38 2 1257 241 292 73 28 chr3 88095311 88095420 -71504363 + B1_Mm SINE Alu 12 125 -22 2 1257 493 229 38 0 chr3 88095525 88095630 -71504153 + RSINE1 SINE B4 2 110 -55 2 1257 256 288 93 66 chr3 88095630 88095646 -71504137 + B2_Mm2 SINE B2 1 124 -71 2 1257 261 0 0 0 chr3 88095646 88095675 -71504108 + (CA)n Simple_repeat Simple_repeat 1 29 0 2 1257 256 288 93 66 chr3 88095675 88095735 -71504048 + B2_Mm2 SINE B2 125 187 -8 2 1257 443 213 0 0 chr3 88095747 88095822 -71503961 + ID4 SINE ID 1 75 -8 2 1257 837 141 83 35 chr3 88095987 88096156 -71503627 + B2_Mm2 SINE B2 3 179 -16 2 1257 939 63 79 0 chr3 88096156 88096283 -71503500 + B1_Mus1 SINE Alu 2 138 -10 2 1257 209 192 39 0 chr3 88096299 88096351 -71503432 + (TAAA)n Simple_repeat Simple_repeat 3 56 0 2 1257 336 177 239 12 chr3 88096386 88096483 -71503300 - PB1D10 SINE Alu -9 108 4 2 1257 685 143 95 29 chr3 88096638 88096775 -71503008 - B1_Mus1 SINE Alu 0 148 3 2 1257 865 220 32 11 chr3 88096798 88096986 -71502797 - B3 SINE B2 -1 215 24 2 1257 184 30 61 0 chr3 88096995 88097028 -71502755 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 2 1257 1308 7 7 0 chr3 88097029 88097175 -71502608 - B1_Mm SINE Alu 0 147 1 2 1257 1332 28 82 28 chr3 88097195 88097377 -71502406 - B2_Mm1a SINE B2 0 193 2 2 1257 444 273 29 50 chr3 88097400 88097539 -71502244 - B1F1 SINE Alu -7 142 7 2 1257 315 267 114 0 chr3 88097546 88097651 -71502132 - PB1D7 SINE Alu -3 117 1 2 1257 450 169 14 0 chr3 88097710 88097781 -71502002 - B4A SINE B4 -2 290 219 2 1257 819 162 51 57 chr3 88097789 88097946 -71501837 - B3 SINE B2 -60 156 1 2 1257 576 245 13 89 chr3 88098043 88098200 -71501583 - B4A SINE B4 -66 226 82 2 1257 1244 41 7 0 chr3 88098221 88098367 -71501416 - B1_Mus2 SINE Alu 0 147 1 2 1257 370 284 10 21 chr3 88098367 88098464 -71501319 - B4A SINE B4 -196 96 1 2 1257 195 336 108 14 chr3 88098469 88098617 -71501166 - MIRb SINE MIR -80 188 27 2 1257 331 288 47 10 chr3 88098659 88098772 -71501011 + B1F2 SINE Alu 1 120 0 2 1257 226 239 232 74 chr3 88098799 88098894 -71500889 + B1F SINE Alu 1 110 -39 2 1257 389 261 61 26 chr3 88099549 88099663 -71500120 - B3A SINE B2 -76 122 5 2 1257 298 198 57 88 chr3 88099659 88099763 -71500020 - PB1D10 SINE Alu -35 114 6 2 1257 313 258 29 76 chr3 88099972 88100077 -71499706 + B1F2 SINE Alu 50 149 0 2 1257 757 194 134 5 chr3 88100248 88100435 -71499348 + B3 SINE B2 2 212 -4 2 1257 382 208 14 0 chr3 88102160 88102232 -71497551 - B3 SINE B2 -96 120 48 2 1257 736 230 123 6 chr3 88102466 88102645 -71497138 - B3 SINE B2 -7 209 10 2 1257 487 223 84 76 chr3 88102634 88102765 -71497018 - B1_Mur1 SINE Alu -16 133 2 2 1257 279 0 0 0 chr3 88102939 88102970 -71496813 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2 1257 358 208 155 10 chr3 88102972 88103069 -71496714 - PB1D9 SINE Alu -9 111 1 2 1257 355 292 55 28 chr3 88103071 88103180 -71496603 + RSINE1 SINE B4 50 161 -4 2 1257 619 253 60 24 chr3 88103512 88103678 -71496105 - B3 SINE B2 -5 211 40 2 1257 482 282 0 0 chr3 88103694 88103797 -71495986 - B1_Mus1 SINE Alu -37 111 9 2 1257 316 116 0 0 chr3 88103992 88104035 -71495748 + B3A SINE B2 3 45 -153 2 1257 282 29 0 0 chr3 88104036 88104071 -71495712 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 2 1257 979 109 0 7 chr3 88104071 88104201 -71495582 - B1_Mus2 SINE Alu -11 136 7 2 1257 1051 75 0 0 chr3 88104203 88104337 -71495446 - B2_Mm2 SINE B2 -61 134 1 2 1257 931 237 0 0 chr3 88104338 88104515 -71495268 + B3 SINE B2 30 206 -10 2 1257 483 230 26 9 chr3 88104542 88104656 -71495127 + PB1D9 SINE Alu 3 118 -2 2 1257 388 235 37 56 chr3 88105000 88105108 -71494675 + PB1D10 SINE Alu 3 108 -9 2 1257 214 273 18 18 chr3 88105123 88105179 -71494604 + AluF_3 SINE Alu 141 196 -115 2 1257 248 302 151 0 chr3 88105294 88105380 -71494403 + PB1D10 SINE Alu 12 110 -7 2 1257 241 295 25 13 chr3 88105382 88105461 -71494322 + ID4_ SINE ID 1 80 -3 2 1257 311 359 31 0 chr3 88105680 88105808 -71493975 - MLT1C LTR MaLR -323 144 13 2 1257 296 221 0 69 chr3 88105842 88105973 -71493810 + ORR1B1-int LTR MaLR 638 759 -750 2 1257 1158 42 0 0 chr3 88105866 88106008 -71493775 + B1_Mus2 SINE Alu 6 147 0 2 1257 379 222 72 93 chr3 88106207 88106229 -71493554 - B1_Mur1 SINE Alu -11 138 113 2 1257 212 0 0 35 chr3 88106229 88106258 -71493525 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 2 1257 379 222 72 93 chr3 88106258 88106374 -71493409 - B1_Mur1 SINE Alu -37 112 3 2 1257 431 283 131 0 chr3 88106465 88106610 -71493173 + RSINE1 SINE B4 2 165 0 2 1257 805 177 7 14 chr3 88106829 88106972 -71492811 + B1_Mus2 SINE Alu 6 147 0 2 1257 298 282 182 33 chr3 88107040 88107161 -71492622 + MER82 DNA MER2_type 32 170 -483 2 1257 382 323 83 72 chr3 88107311 88107491 -71492292 - B3A SINE B2 -16 182 1 2 1257 251 220 67 17 chr3 88107494 88107550 -71492233 + B3 SINE B2 39 97 -119 2 1257 824 221 78 108 chr3 88107550 88108068 -71491715 - RLTR20C LTR ERVK 0 578 1 2 1257 565 178 50 17 chr3 88108068 88108188 -71491595 + B3 SINE B2 89 212 -4 2 1257 217 200 0 156 chr3 88108263 88108340 -71491443 - PB1D10 SINE Alu -30 87 23 2 1257 1434 49 43 21 chr3 88108347 88108534 -71491249 - B2_Mm2 SINE B2 -2 193 3 2 1257 289 250 0 29 chr3 88109135 88109205 -71490578 + B4A SINE B4 225 292 0 2 1257 307 286 102 28 chr3 88109322 88109430 -71490353 + RSINE1 SINE B4 48 163 -2 2 1257 513 307 113 31 chr3 88109449 88109644 -71490139 + B4A SINE B4 82 292 0 2 1257 242 214 0 0 chr3 88109953 88109995 -71489788 + PB1D9 SINE Alu 15 56 -64 2 1257 652 151 57 0 chr3 88110030 88110136 -71489647 + B1_Mur2 SINE Alu 36 147 -2 2 1257 1156 48 20 7 chr3 88110141 88110287 -71489496 + B1_Mus1 SINE Alu 1 148 0 2 1257 1037 172 177 39 chr3 88110470 88110730 -71489053 - Lx8 LINE L1 -141 7332 7037 2 1257 331 289 227 13 chr3 88110748 88110902 -71488881 - Lx8 LINE L1 -488 6985 6799 2 1257 867 299 18 0 chr3 88110902 88111126 -71488657 - Lx8 LINE L1 -1041 6432 6205 2 1257 1114 56 41 21 chr3 88111171 88111316 -71488467 - B1_Mus1 SINE Alu 0 148 1 2 1257 1504 53 32 0 chr3 88111325 88111512 -71488271 - B2_Mm1a SINE B2 0 193 1 2 1257 498 209 104 37 chr3 88111516 88111650 -71488133 - B1_Mus2 SINE Alu 0 147 5 2 1257 465 71 71 0 chr3 88111834 88111919 -71487864 - L1Md_F2 LINE L1 0 6582 6492 2 1257 419 289 129 24 chr3 88111938 88112062 -71487721 - B1_Mur3 SINE Alu -10 139 3 2 1257 267 359 54 14 chr3 88112062 88112085 -71487698 - B4A SINE B4 -75 217 65 2 1257 326 311 45 11 chr3 88112088 88112261 -71487522 - B3 SINE B2 -16 182 1 2 1257 360 238 231 28 chr3 88112387 88112495 -71487288 - ID_B1 SINE B4 -2 222 93 2 1257 198 0 0 0 chr3 88112658 88112680 -71487103 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 2 1257 1175 103 0 0 chr3 88112682 88112838 -71486945 - B2_Mm2 SINE B2 -39 156 1 2 1257 904 271 21 0 chr3 88113552 88113740 -71486043 + B3 SINE B2 1 192 -24 2 1257 307 179 375 0 chr3 88113742 88113853 -71485930 - MT2A LTR ERVL -2 531 379 2 1257 1112 110 13 0 chr3 88113853 88114008 -71485775 + B2_Mm2 SINE B2 1 157 -38 3 1257 1415 170 74 46 chr3 88114023 88114353 -71485430 - MT2A LTR ERVL -130 471 1 3 1257 227 238 29 87 chr3 88114364 88114433 -71485350 + ID_B1 SINE B4 78 142 -82 3 1257 350 188 31 0 chr3 88114377 88114441 -71485342 + B1_Mur4 SINE Alu 5 70 -80 3 1257 1254 47 23 34 chr3 88114445 88114461 -71485322 - B2_Mm2 SINE B2 0 195 183 3 1257 1058 63 28 14 chr3 88114461 88114605 -71485178 - B1_Mus2 SINE Alu 0 147 2 3 1257 1254 47 23 34 chr3 88114605 88114763 -71485020 - B2_Mm2 SINE B2 -13 182 23 3 1257 1315 109 16 0 chr3 88114899 88115082 -71484701 - B2_Mm2 SINE B2 -9 186 1 3 1257 423 223 165 0 chr3 88115186 88115289 -71484494 + PB1D9 SINE Alu 1 120 0 3 1257 216 295 64 0 chr3 88115317 88115395 -71484388 - B1F SINE Alu -18 131 49 3 1257 753 163 38 23 chr3 88115775 88115907 -71483876 - B1_Mus1 SINE Alu 0 148 15 3 1257 876 107 25 0 chr3 88115906 88116028 -71483755 - B2_Mm2 SINE B2 -70 125 1 3 1257 220 299 132 15 chr3 88116311 88116379 -71483404 + PB1 SINE Alu 26 101 -26 3 1257 416 185 144 27 chr3 88116474 88116585 -71483198 - B1_Mm SINE Alu -13 134 11 3 1257 226 250 307 0 chr3 88116699 88116787 -71482996 + PB1D7 SINE Alu 1 115 -5 3 1257 258 306 8 98 chr3 88116988 88117111 -71482672 - B3A SINE B2 -7 191 80 3 1257 357 24 0 0 chr3 88117703 88117745 -71482038 + (TTTC)n Simple_repeat Simple_repeat 1 42 0 3 1257 377 322 17 0 chr3 88117745 88117860 -71481923 - B1F2 SINE Alu -14 135 19 3 1257 310 272 30 80 chr3 88117991 88118091 -71481692 + PB1D9 SINE Alu 18 112 -8 3 1257 324 267 88 11 chr3 88118117 88118208 -71481575 - B3A SINE B2 -92 106 9 3 1257 382 182 71 14 chr3 88118249 88118336 -71481447 + B1_Mur1 SINE Alu 34 126 -21 3 1257 909 133 57 72 chr3 88118379 88118573 -71481210 + B2_Mm2 SINE B2 1 191 -4 3 1257 660 233 85 0 chr3 88118581 88118710 -71481073 + B1_Mur3 SINE Alu 3 142 -7 3 1257 398 257 45 45 chr3 88118735 88118845 -71480938 + RSINE1 SINE B4 2 111 -54 3 1257 399 276 15 82 chr3 88118963 88119097 -71480686 + B1F SINE Alu 9 133 -16 3 1257 383 315 0 97 chr3 88119115 88119259 -71480524 + RSINE1 SINE B4 12 141 -24 3 1257 460 286 37 15 chr3 88119320 88119455 -71480328 + ID_B1 SINE B4 87 224 0 3 1257 377 259 51 43 chr3 88119470 88119587 -71480196 + B1F SINE Alu 27 144 -5 3 1257 390 164 194 51 chr3 88119589 88119705 -71480078 + RSINE1 SINE B4 1 129 -36 3 1257 608 232 72 7 chr3 88120081 88120220 -71479563 + B1_Mus1 SINE Alu 1 148 0 3 1257 528 256 86 14 chr3 88120239 88120378 -71479405 + B1_Mur2 SINE Alu 1 149 0 3 1257 915 81 0 8 chr3 88120408 88120524 -71479259 - B1_Mus1 SINE Alu 0 148 33 3 1257 1058 77 143 0 chr3 88120524 88120692 -71479091 - B2_Mm2 SINE B2 -2 193 2 3 1257 342 242 171 18 chr3 88120818 88120918 -71478865 - PB1D10 SINE Alu -17 110 14 3 1257 1411 182 44 22 chr3 88121085 88121355 -71478428 - ORR1A4 LTR MaLR -8 321 46 3 1257 1446 26 87 25 chr3 88121360 88121556 -71478227 + L1Md_F2 LINE L1 6375 6582 0 3 1257 1122 83 7 0 chr3 88121615 88121759 -71478024 + B1_Mus2 SINE Alu 3 147 0 3 1257 531 189 18 9 chr3 88121766 88121878 -71477905 - ORR1B1 LTR MaLR -281 113 1 3 1257 255 215 14 97 chr3 88121883 88121955 -71477828 - RSINE1 SINE B4 -99 66 1 3 1257 1249 104 16 5 chr3 88122953 88123137 -71476646 + B2_Mm2 SINE B2 5 190 -5 3 1257 1213 48 7 0 chr3 88123157 88123302 -71476481 + B1_Mm SINE Alu 2 147 0 3 1257 332 324 75 81 chr3 88123303 88123320 -71476463 + B4 SINE B4 70 225 -63 3 1257 622 237 50 7 chr3 88123320 88123460 -71476323 + B1_Mm SINE Alu 2 147 0 3 1257 213 277 77 0 chr3 88123471 88123536 -71476247 + B3A SINE B2 1 70 -128 3 1257 583 228 0 42 chr3 88123631 88123750 -71476033 + B1_Mur1 SINE Alu 2 115 -34 3 1257 237 270 108 0 chr3 88124750 88124824 -71474959 - B4 SINE B4 0 292 211 3 1257 212 243 66 149 chr3 88125831 88125952 -71473831 - PB1D9 SINE Alu -9 111 1 3 1257 335 379 0 25 chr3 88126100 88126257 -71473526 + RSINE1 SINE B4 3 155 -10 3 1257 444 225 0 0 chr3 88126294 88126374 -71473409 + PB1D7 SINE Alu 30 109 -11 3 1257 554 257 72 7 chr3 88126367 88126520 -71473263 + B3A SINE B2 14 176 -22 3 1257 310 149 0 0 chr3 88126531 88126578 -71473205 + B1_Mur1 SINE Alu 77 123 -26 3 1257 247 261 32 136 chr3 88126578 88126677 -71473106 + Arthur1 DNA Tip100 1712 1839 -2108 3 1257 246 219 0 0 chr3 88126698 88126739 -71473044 + PB1D9 SINE Alu 1 41 -79 3 1257 343 208 253 11 chr3 88126811 88126916 -71472867 + B3 SINE B2 1 142 -56 3 1257 418 190 77 65 chr3 88127049 88127218 -71472565 + RMER17C LTR ERVK 97 267 -143 3 1257 590 194 44 44 chr3 88127244 88127379 -71472404 + B1_Mus2 SINE Alu 1 135 -12 3 1257 210 213 21 0 chr3 88127460 88127507 -71472276 - B1_Mur1 SINE Alu -2 147 100 3 1257 969 191 87 5 chr3 88127573 88127757 -71472026 + B3 SINE B2 1 199 -17 3 1257 532 193 26 35 chr3 88127780 88127893 -71471890 + B1_Mur2 SINE Alu 2 113 -36 3 1257 217 245 75 0 chr3 88127956 88128009 -71471774 - ID_B1 SINE B4 -68 156 100 3 1257 914 84 114 0 chr3 88128122 88128253 -71471530 - B1_Mus1 SINE Alu -1 147 2 3 1257 1330 96 5 5 chr3 88128463 88128652 -71471131 - B2_Mm1t SINE B2 -3 190 2 3 1257 873 161 27 7 chr3 88130659 88130832 -71468951 - B3 SINE B2 -8 187 1 3 1257 943 225 22 0 chr3 88130844 88131026 -71468757 - B3A SINE B2 -10 188 3 3 1257 646 194 48 41 chr3 88131058 88131203 -71468580 - B1_Mur1 SINE Alu -1 148 3 3 1257 240 111 0 0 chr3 88131209 88131245 -71468538 + (T)n Simple_repeat Simple_repeat 1 36 0 3 1257 1209 68 0 0 chr3 88131245 88131392 -71468391 - B1_Mus2 SINE Alu 0 147 1 3 1257 546 266 112 6 chr3 88132588 88132758 -71467025 - B3A SINE B2 -8 190 3 3 1257 1166 44 0 0 chr3 88134017 88134154 -71465629 - B1_Mus1 SINE Alu -11 137 1 3 1257 713 194 27 40 chr3 88134769 88134919 -71464864 + B1_Mur2 SINE Alu 2 149 0 3 1257 375 304 52 0 chr3 88134931 88135046 -71464737 + B1F SINE Alu 29 149 0 3 1257 1298 110 21 0 chr3 88135058 88135249 -71464534 + B2_Mm2 SINE B2 1 195 0 3 1257 654 13 0 0 chr3 88135476 88135551 -71464232 + (TTTC)n Simple_repeat Simple_repeat 4 78 0 3 1257 1505 50 6 0 chr3 88135552 88135733 -71464050 - B2_Mm1a SINE B2 -11 182 1 3 1257 585 129 0 0 chr3 88135733 88135826 -71463957 + (TC)n Simple_repeat Simple_repeat 2 94 0 3 1257 216 158 0 0 chr3 88135829 88135867 -71463916 + T-rich Low_complexity Low_complexity 1 38 0 3 1257 1184 62 0 7 chr3 88135869 88136015 -71463768 - B1_Mus2 SINE Alu -2 145 1 3 1257 503 128 41 51 chr3 88138716 88138814 -71460969 + B1_Mus1 SINE Alu 9 126 -23 3 1257 261 0 0 0 chr3 88138814 88138843 -71460940 + (TC)n Simple_repeat Simple_repeat 1 29 0 3 1257 315 0 0 0 chr3 88138843 88138877 -71460906 + (CA)n Simple_repeat Simple_repeat 1 35 0 3 1257 326 217 53 70 chr3 88138877 88138891 -71460892 + PB1D7 SINE Alu 107 119 -1 3 1257 195 281 122 26 chr3 88139026 88139146 -71460637 - L2b LINE L2 -334 3092 2950 3 1257 180 0 0 0 chr3 88139168 88139188 -71460595 + (GA)n Simple_repeat Simple_repeat 1 20 0 3 1257 375 226 246 16 chr3 88139224 88139350 -71460433 + RSINE1 SINE B4 3 157 -8 3 1257 383 103 0 0 chr3 88139597 88139655 -71460128 - B3 SINE B2 -86 130 73 3 1257 571 178 99 15 chr3 88139769 88139900 -71459883 - RSINE1 SINE B4 -19 146 5 3 1257 231 289 11 22 chr3 88140219 88140311 -71459472 + (CGG)n Simple_repeat Simple_repeat 1 91 0 3 1257 218 184 56 22 chr3 88140451 88140540 -71459243 + (CGGG)n Simple_repeat Simple_repeat 3 94 0 3 1257 189 0 0 0 chr3 88140562 88140583 -71459200 + (TGGG)n Simple_repeat Simple_repeat 1 21 0 3 1257 241 240 252 0 chr3 88140745 88140863 -71458920 + MIRc SINE MIR 9 152 -56 3 1257 1220 41 7 0 chr3 88140863 88141008 -71458775 + B1_Mus2 SINE Alu 1 146 -1 3 1257 448 214 156 17 chr3 88141043 88141194 -71458589 + B3 SINE B2 34 192 -3 3 1257 207 139 0 0 chr3 88141913 88141949 -71457834 + (TG)n Simple_repeat Simple_repeat 1 36 0 3 1257 329 117 17 0 chr3 88142017 88142077 -71457706 + (TG)n Simple_repeat Simple_repeat 2 62 0 3 1257 616 173 0 89 chr3 88142338 88142484 -71457299 - B1_Mus2 SINE Alu 0 147 15 3 1257 286 274 18 89 chr3 88142395 88142507 -71457276 - MT2B LTR ERVL -343 258 155 3 1257 650 94 236 49 chr3 88142601 88142724 -71457059 + B1_Mus2 SINE Alu 2 147 0 3 1257 1218 68 0 0 chr3 88143716 88143864 -71455919 - B1_Mus1 SINE Alu 0 148 1 3 1257 510 273 18 96 chr3 88143907 88144073 -71455710 - RSINE1 SINE B4 0 165 13 3 1257 249 98 0 0 chr3 88144173 88144214 -71455569 + (T)n Simple_repeat Simple_repeat 1 41 0 3 1257 382 261 216 0 chr3 88144572 88144683 -71455100 + B3 SINE B2 6 140 -76 3 1257 319 279 12 60 chr3 88144791 88144875 -71454908 - RSINE1 SINE B4 -51 114 35 3 1257 235 287 81 50 chr3 88144964 88144989 -71454794 - B3A SINE B2 -92 106 5 4 1257 264 288 27 14 chr3 88144989 88145063 -71454720 - B4A SINE B4 -213 79 5 4 1257 323 294 19 65 chr3 88145364 88145472 -71454311 - PB1 SINE Alu -7 120 10 4 1257 219 224 0 49 chr3 88145635 88145696 -71454087 + CT-rich Low_complexity Low_complexity 1 58 0 4 1257 780 265 37 138 chr3 88147562 88147755 -71452028 + B4A SINE B4 25 211 -81 4 1257 685 296 6 47 chr3 88147755 88147925 -71451858 + RSINE1 SINE B4 3 165 0 4 1257 780 265 37 138 chr3 88147925 88148029 -71451754 + B4A SINE B4 212 292 0 4 1257 319 282 14 0 chr3 88148056 88148127 -71451656 + ID4_ SINE ID 12 83 0 4 1257 711 203 0 134 chr3 88148371 88148463 -71451320 - B1_Mur2 SINE Alu -1 148 66 4 1257 1522 53 26 5 chr3 88148463 88148654 -71451129 + B2_Mm2 SINE B2 1 195 0 4 1257 711 203 0 134 chr3 88148654 88148732 -71451051 - B1_Mur2 SINE Alu -84 65 1 4 1257 666 149 83 0 chr3 88148807 88148928 -71450855 - B1_Mus1 SINE Alu -17 131 1 4 1257 1151 62 0 40 chr3 88149693 88149845 -71449938 + B1_Mus1 SINE Alu 2 147 -1 4 1257 794 284 19 14 chr3 88150734 88150945 -71448838 + ID_B1 SINE B4 1 212 -12 4 1257 1170 69 0 0 chr3 88151072 88151217 -71448566 + B1_Mus2 SINE Alu 1 145 -2 4 1257 237 132 0 0 chr3 88151585 88151623 -71448160 + (T)n Simple_repeat Simple_repeat 1 38 0 4 1257 1128 82 0 7 chr3 88151623 88151771 -71448012 - B1_Mus2 SINE Alu 0 147 1 4 1257 453 257 21 56 chr3 88151975 88152119 -71447664 - B1F1 SINE Alu -1 148 10 4 1257 510 179 109 86 chr3 88152196 88152324 -71447459 - B3 SINE B2 0 216 86 4 1257 306 211 53 0 chr3 88152322 88152398 -71447385 + PB1D10 SINE Alu 33 112 -5 4 1257 489 34 0 0 chr3 88152775 88152834 -71446949 + (TC)n Simple_repeat Simple_repeat 2 60 0 4 1257 199 118 38 38 chr3 88152835 88152888 -71446895 + (TCTG)n Simple_repeat Simple_repeat 2 54 0 4 1257 703 164 15 62 chr3 88153641 88153771 -71446012 - B1_Mur1 SINE Alu -13 136 13 4 1257 582 314 27 68 chr3 88153771 88153783 -71446000 - ID_B1 SINE B4 -13 211 82 4 1257 195 42 0 0 chr3 88153783 88153807 -71445976 + (ATTG)n Simple_repeat Simple_repeat 2 25 0 4 1257 582 314 27 68 chr3 88153807 88153883 -71445900 - ID SINE ID -143 81 2 4 1257 704 197 73 0 chr3 88156086 88156223 -71443560 - B1_Mus1 SINE Alu 0 148 2 4 1257 1170 22 0 0 chr3 88156487 88156624 -71443159 + B1_Mus2 SINE Alu 10 146 -1 4 1257 196 301 58 46 chr3 88159834 88159988 -71439795 + MIRc SINE MIR 69 230 -38 4 1257 195 42 0 0 chr3 88161502 88161526 -71438257 + (T)n Simple_repeat Simple_repeat 1 24 0 4 1257 1125 88 0 0 chr3 88161526 88161673 -71438110 - B1_Mus1 SINE Alu 0 148 2 4 1257 821 249 36 36 chr3 88166395 88166587 -71433196 + B3 SINE B2 1 192 -24 4 1257 203 192 0 19 chr3 88166776 88166829 -71432954 + (GTTTG)n Simple_repeat Simple_repeat 3 54 0 4 1257 682 200 82 0 chr3 88166829 88166964 -71432819 - B1_Mus2 SINE Alu 0 147 2 4 1257 1073 90 35 0 chr3 88169386 88169530 -71430253 - B1_Mur3 SINE Alu 0 149 1 4 1257 509 108 135 31 chr3 88170528 88170624 -71429159 - B1_Mus1 SINE Alu -20 128 23 4 1257 266 265 69 30 chr3 88170648 88170749 -71429034 - ID_B1 SINE B4 -50 174 70 4 1257 219 36 0 0 chr3 88172391 88172419 -71427364 + (TTTTTG)n Simple_repeat Simple_repeat 1 28 0 4 1257 2543 98 0 84 chr3 88173516 88173908 -71425875 - RLTR10D LTR ERVK 0 359 1 4 1257 13083 29 3 1 chr3 88173908 88175476 -71424307 - IAP-d-int LTR ERVK -2 6540 4970 4 1257 8679 38 2 0 chr3 88175474 88176528 -71423255 - IAP-d-int LTR ERVK -5486 1056 1 4 1257 2565 97 0 80 chr3 88176528 88176918 -71422865 - RLTR10D LTR ERVK 0 359 1 4 1257 1309 151 151 0 chr3 88177426 88177685 -71422098 + MTC LTR MaLR 1 298 -123 4 1257 1449 70 5 5 chr3 88177983 88178171 -71421612 - B2_Mm2 SINE B2 -7 188 1 4 1257 1291 106 0 50 chr3 88178486 88178684 -71421099 + B2_Mm2 SINE B2 1 188 -7 4 1257 471 35 0 0 chr3 88178868 88178925 -71420858 + (TTTC)n Simple_repeat Simple_repeat 3 59 0 4 1257 1171 99 0 6 chr3 88178931 88179103 -71420680 - B2_Mm2 SINE B2 -23 172 2 4 1257 232 85 0 113 chr3 88179284 88179337 -71420446 + C-rich Low_complexity Low_complexity 1 47 0 4 1257 235 190 16 65 chr3 88179448 88179510 -71420273 - RLTR22_Mus LTR ERVK 0 1808 1750 4 1257 500 161 165 26 chr3 88179636 88179751 -71420032 - B1_Mus1 SINE Alu -5 143 13 4 1257 266 265 69 30 chr3 88179768 88179869 -71419914 - ID_B1 SINE B4 -50 174 70 4 1257 219 36 0 0 chr3 88181505 88181533 -71418250 + (TTTTTG)n Simple_repeat Simple_repeat 1 28 0 4 1257 1338 143 151 0 chr3 88183138 88183397 -71416386 + MTC LTR MaLR 1 298 -123 4 1257 1433 75 5 5 chr3 88183697 88183885 -71415898 - B2_Mm2 SINE B2 -7 188 1 4 1257 1329 80 10 51 chr3 88184205 88184402 -71415381 + B2_Mm1t SINE B2 1 189 -4 4 1257 690 75 0 0 chr3 88184586 88184679 -71415104 + (TTTC)n Simple_repeat Simple_repeat 3 95 0 4 1257 1298 93 17 0 chr3 88184685 88184857 -71414926 - B2_Mm2 SINE B2 -19 176 2 4 1257 211 113 0 112 chr3 88185033 88185113 -71414670 + C-rich Low_complexity Low_complexity 1 71 0 4 1257 235 190 16 65 chr3 88185224 88185286 -71414497 - RLTR22_Mus LTR ERVK 0 1808 1750 4 1257 473 152 176 28 chr3 88185405 88185513 -71414270 - B1_Mus1 SINE Alu -2 146 23 4 1257 243 276 69 30 chr3 88185537 88185638 -71414145 - ID_B1 SINE B4 -50 174 70 4 1257 219 36 0 0 chr3 88187270 88187298 -71412485 + (TTTTTG)n Simple_repeat Simple_repeat 1 28 0 4 1257 1283 154 151 0 chr3 88188899 88189158 -71410625 + MTC LTR MaLR 1 298 -123 4 1257 1295 120 16 5 chr3 88189521 88189713 -71410070 - B2_Mm2 SINE B2 0 195 2 4 1257 194 85 0 119 chr3 88189889 88189956 -71409827 + C-rich Low_complexity Low_complexity 1 59 0 4 1257 11045 64 22 106 chr3 88190074 88190661 -71409122 - RLTR22_Mus LTR ERVK -25 1783 1319 4 1257 1525 70 5 0 chr3 88190661 88190848 -71408935 - B2_Mm1t SINE B2 -4 189 2 4 1257 11045 64 22 106 chr3 88190848 88191087 -71408696 - RLTR22_Mus LTR ERVK -490 1318 1119 4 1257 809 77 17 0 chr3 88191087 88191204 -71408579 + (TTTC)n Simple_repeat Simple_repeat 2 120 0 4 1257 11045 64 22 106 chr3 88191204 88191215 -71408568 - RLTR22_Mus LTR ERVK -690 1118 1118 4 1257 1150 79 0 0 chr3 88191215 88191354 -71408429 - B1_Mus1 SINE Alu -5 143 5 4 1257 11045 64 22 106 chr3 88191354 88191859 -71407924 - RLTR22_Mus LTR ERVK -690 1118 600 4 1257 1272 114 16 0 chr3 88191859 88192043 -71407740 - B2_Mm1t SINE B2 -6 187 1 4 1257 11045 64 22 106 chr3 88192043 88192454 -71407329 - RLTR22_Mus LTR ERVK -1209 599 190 4 1257 1365 93 0 37 chr3 88192454 88192644 -71407139 - B2_Mm1t SINE B2 -9 184 2 4 1257 11045 64 22 106 chr3 88192644 88192833 -71406950 - RLTR22_Mus LTR ERVK -1619 189 1 4 1257 267 255 0 0 chr3 88193247 88193298 -71406485 + SRV_MM-int LTR ERVK 510 560 -5607 4 1257 280 390 15 15 chr3 88193712 88193915 -71405868 + MMTV-int LTR ERVK 2396 2598 -5619 4 1257 852 332 10 5 chr3 88194485 88194875 -71404908 + MMTV-int LTR ERVK 2789 3180 -4073 4 1257 428 321 60 43 chr3 88194880 88195284 -71404499 - MYSERV6-int LTR ERVK -6086 2873 2507 4 1257 584 324 31 30 chr3 88195677 88196164 -71403619 + MMTV-int LTR ERVK 5392 5733 -1673 4 1257 1169 56 7 0 chr3 88196196 88196340 -71403443 + B1_Mm SINE Alu 3 147 0 4 1257 1164 62 7 7 chr3 88196460 88196607 -71403176 + B1_Mm SINE Alu 1 147 0 4 1257 396 248 60 37 chr3 88196907 88197041 -71402742 - MMTV-int LTR ERVK -1975 5278 5142 4 1257 268 164 0 40 chr3 88197052 88197130 -71402653 - B1_Mus2 SINE Alu -55 72 1 4 1257 249 176 39 0 chr3 88197093 88197144 -71402639 - B4 SINE B4 -170 122 70 4 1257 234 250 18 0 chr3 88198763 88198819 -71400964 - ID4 SINE ID -10 73 17 4 1257 377 187 53 0 chr3 88199447 88199522 -71400261 - B3 SINE B2 -74 142 64 4 1257 2110 148 120 32 chr3 88200427 88200860 -71398923 + RMER4B LTR ERVK 114 584 -1 4 1257 710 121 73 0 chr3 88201266 88201390 -71398393 - B1_Mur4 SINE Alu -2 148 16 4 1257 242 239 52 17 chr3 88201417 88201488 -71398295 + PB1D7 SINE Alu 2 75 -42 4 1257 349 216 270 35 chr3 88201495 88201610 -71398173 + B1_Mur2 SINE Alu 4 145 -4 4 1257 636 246 119 6 chr3 88201644 88201820 -71397963 + B3 SINE B2 2 197 -19 4 1257 799 187 0 45 chr3 88201918 88202075 -71397708 + B1_Mur4 SINE Alu 1 150 0 4 1257 859 238 14 68 chr3 88202084 88202210 -71397573 - B3 SINE B2 -7 209 93 4 1257 1286 21 0 0 chr3 88202210 88202353 -71397430 + B1_Mus2 SINE Alu 1 143 -4 4 1257 492 18 0 0 chr3 88202354 88202411 -71397372 + (GGAA)n Simple_repeat Simple_repeat 2 58 0 4 1257 859 238 14 68 chr3 88202411 88202503 -71397280 - B3 SINE B2 -124 92 1 4 1257 413 225 372 32 chr3 88203923 88204090 -71395693 + ID_B1 SINE B4 1 224 0 4 1257 259 169 0 92 chr3 88204110 88204127 -71395656 + ORR1D1 LTR MaLR 1 17 -357 4 1257 1869 162 79 28 chr3 88204127 88204483 -71395300 - ORR1D1 LTR MaLR 0 374 1 4 1257 259 169 0 92 chr3 88204483 88204530 -71395253 + ORR1D1 LTR MaLR 18 59 -315 4 1257 276 207 120 71 chr3 88204530 88204687 -71395096 - RLTR13C1 LTR ERVK -19 1014 812 4 1257 1280 34 0 0 chr3 88204829 88204975 -71394808 + B1_Mus2 SINE Alu 2 147 0 4 1257 246 57 0 0 chr3 88205127 88205162 -71394621 - B3A SINE B2 -163 35 1 4 1257 916 206 189 29 chr3 88205663 88205943 -71393840 + ORR1D1 LTR MaLR 50 374 0 4 1257 468 51 0 0 chr3 88206090 88206149 -71393634 + (TTTC)n Simple_repeat Simple_repeat 2 60 0 4 1257 234 304 79 46 chr3 88206327 88206479 -71393304 - MIRc SINE MIR -98 170 14 4 1257 186 133 0 0 chr3 88207541 88207571 -71392212 + (A)n Simple_repeat Simple_repeat 1 30 0 4 1257 1023 195 103 0 chr3 88207735 88207930 -71391853 - B3 SINE B2 -1 215 1 4 1257 192 97 0 0 chr3 88207930 88207961 -71391822 + (TATG)n Simple_repeat Simple_repeat 4 34 0 4 1257 490 296 35 23 chr3 88207997 88208170 -71391613 + ID_B1 SINE B4 19 193 -31 4 1257 271 256 22 0 chr3 88208184 88208274 -71391509 + (CAGA)n Simple_repeat Simple_repeat 2 93 0 4 1257 483 63 0 0 chr3 88208297 88208360 -71391423 + (GAAAA)n Simple_repeat Simple_repeat 1 63 0 4 1257 755 184 22 22 chr3 88208364 88208503 -71391280 + B1_Mur2 SINE Alu 11 149 0 4 1257 424 251 335 0 chr3 88208529 88208696 -71391087 + ID_B1 SINE B4 2 224 0 5 1257 436 228 87 19 chr3 88208716 88208819 -71390964 + PB1D10 SINE Alu 1 110 -7 5 1257 1100 55 7 33 chr3 88208956 88209107 -71390676 - B1_Mus1 SINE Alu 0 148 2 5 1257 21 0 0 0 chr3 88209117 88209138 -71390645 + AT_rich Low_complexity Low_complexity 1 21 0 5 1257 977 103 123 29 chr3 88209148 88209318 -71390465 + B2_Mm2 SINE B2 1 186 -9 5 1257 212 226 145 0 chr3 88209331 88209393 -71390390 + PB1 SINE Alu 46 116 -11 5 1257 257 279 12 12 chr3 88209400 88209480 -71390303 - ID4 SINE ID -3 80 1 5 1257 1369 66 54 5 chr3 88209511 88209695 -71390088 + B2_Mm2 SINE B2 3 195 0 5 1257 261 318 71 18 chr3 88209729 88209841 -71389942 + B1F SINE Alu 32 149 0 5 1257 473 126 168 0 chr3 88209875 88209970 -71389813 + PB1D9 SINE Alu 9 119 -1 5 1257 1384 84 17 0 chr3 88209992 88210170 -71389613 + B2_Mm2 SINE B2 2 182 -13 5 1257 400 278 134 70 chr3 88210431 88210520 -71389263 + B4 SINE B4 1 101 -191 5 1257 393 246 113 9 chr3 88210520 88210635 -71389148 + B1F2 SINE Alu 1 127 -22 5 1257 275 173 68 5 chr3 88210763 88210828 -71388955 - B1_Mur2 SINE Alu -2 147 82 5 1257 304 259 37 0 chr3 88210938 88211046 -71388737 + PB1D7 SINE Alu 1 112 -8 5 1257 436 286 46 73 chr3 88211276 88211427 -71388356 + ID_B1 SINE B4 25 171 -53 5 1258 499 281 14 47 chr3 88211545 88211857 -71387926 + RSINE1 SINE B4 1 274 -18 5 1258 404 345 63 23 chr3 88211973 88212148 -71387635 - MIR SINE MIR -20 242 61 5 1258 1155 62 14 0 chr3 88213222 88213368 -71386415 - B1_Mus1 SINE Alu 0 148 1 5 1258 702 184 117 48 chr3 88213389 88213577 -71386206 - B3 SINE B2 -1 215 15 5 1258 607 109 33 18 chr3 88213601 88213718 -71386065 + B1_Mus2 SINE Alu 13 147 0 5 1258 626 229 50 0 chr3 88215069 88215209 -71384574 + ID_B1 SINE B4 76 222 -2 5 1258 1122 109 0 28 chr3 88217041 88217221 -71382562 + B2_Mm2 SINE B2 2 176 -19 5 1258 369 62 0 0 chr3 88217221 88217269 -71382514 + (GA)n Simple_repeat Simple_repeat 1 48 0 5 1258 834 197 7 0 chr3 88217305 88217447 -71382336 + B1_Mur1 SINE Alu 1 143 -6 5 1258 188 122 24 0 chr3 88218693 88218734 -71381049 + (CAAAA)n Simple_repeat Simple_repeat 5 46 0 5 1258 481 194 75 68 chr3 88218756 88218889 -71380894 + ID_B1 SINE B4 91 224 0 5 1258 494 174 118 9 chr3 88218910 88219020 -71380763 + ID_B1 SINE B4 103 224 0 5 1258 374 283 166 6 chr3 88219048 88219229 -71380554 + ID_B1 SINE B4 1 210 -14 5 1258 629 286 54 20 chr3 88220315 88220518 -71379265 - ID_B1 SINE B4 -13 211 2 5 1258 388 205 286 0 chr3 88220631 88220743 -71379040 + B1_Mm SINE Alu 2 145 -2 5 1258 350 311 22 0 chr3 88220774 88220864 -71378919 + ID_B1 SINE B4 115 206 -18 5 1258 568 234 116 77 chr3 88220896 88221077 -71378706 + ID_B1 SINE B4 36 223 -1 5 1258 278 304 0 0 chr3 88221147 88221216 -71378567 + ID4_ SINE ID 2 70 -13 5 1258 372 346 126 44 chr3 88221359 88221813 -71377970 - L2a LINE L2 -1 3425 2935 5 1258 488 297 59 115 chr3 88222304 88222643 -71377140 + RLTR12B LTR ERVK 166 485 -43 5 1258 308 336 56 0 chr3 88222723 88222848 -71376935 + B1F1 SINE Alu 17 148 -1 5 1258 482 271 61 80 chr3 88222874 88223076 -71376707 + ID_B1 SINE B4 50 246 -46 5 1258 381 281 49 28 chr3 88223130 88223273 -71376510 + B1F SINE Alu 1 146 -3 5 1258 262 277 39 10 chr3 88223273 88223375 -71376408 + PB1D10 SINE Alu 4 108 -9 5 1258 215 293 104 26 chr3 88223377 88223454 -71376329 + ID_B1 SINE B4 55 137 -87 5 1258 433 303 20 27 chr3 88223466 88223487 -71376296 + ID_B1 SINE B4 78 222 -2 5 1258 459 288 56 0 chr3 88223487 88223612 -71376171 + B1F SINE Alu 18 149 0 5 1258 275 227 40 0 chr3 88223910 88223985 -71375798 - ID4 SINE ID -1 82 5 5 1258 393 271 59 8 chr3 88224009 88224128 -71375655 + B1F SINE Alu 25 149 0 5 1258 189 121 0 0 chr3 88224253 88224286 -71375497 + (GGCTG)n Simple_repeat Simple_repeat 4 36 0 5 1258 720 292 42 23 chr3 88226843 88227060 -71372723 + ID_B1 SINE B4 1 221 -3 5 1258 1343 90 16 0 chr3 88227064 88227253 -71372530 + B2_Mm2 SINE B2 1 192 -3 5 1258 1126 68 0 13 chr3 88227256 88227406 -71372377 + B1_Mus1 SINE Alu 1 148 0 5 1258 351 273 50 10 chr3 88227640 88227740 -71372043 - PB1D10 SINE Alu -2 115 12 5 1258 432 284 128 0 chr3 88227664 88227812 -71371971 - ID_B1 SINE B4 -56 168 2 5 1258 374 280 20 0 chr3 88227962 88228062 -71371721 + PB1D10 SINE Alu 3 104 -13 5 1258 252 287 69 0 chr3 88228078 88228165 -71371618 + MER5A1 DNA MER1_type 74 166 0 5 1258 368 191 12 0 chr3 88229278 88229362 -71370421 + CT-rich Low_complexity Low_complexity 1 85 0 5 1258 324 297 9 9 chr3 88229385 88229497 -71370286 - PB1D10 SINE Alu -5 112 1 5 1258 1040 73 7 0 chr3 88229830 88229966 -71369817 + B1_Mus2 SINE Alu 2 138 -9 5 1258 702 254 171 109 chr3 88229996 88230287 -71369496 + MTD LTR MaLR 3 345 -74 5 1258 601 229 21 0 chr3 88230287 88230431 -71369352 + B1_Mur2 SINE Alu 2 148 -1 5 1258 702 254 171 109 chr3 88230431 88230532 -71369251 + MTD LTR MaLR 346 419 0 5 1258 500 290 29 0 chr3 88230612 88230750 -71369033 - B1F SINE Alu 0 149 8 5 1258 1052 164 58 36 chr3 88230823 88231136 -71368647 + RMER16 LTR ERVK 198 533 0 5 1258 492 99 0 0 chr3 88231206 88231277 -71368506 + (TCTCCC)n Simple_repeat Simple_repeat 6 76 0 5 1258 282 29 0 0 chr3 88231277 88231312 -71368471 + (CA)n Simple_repeat Simple_repeat 1 35 0 5 1258 423 279 0 0 chr3 88231365 88231469 -71368314 + B3A SINE B2 65 168 -30 5 1258 1523 62 0 0 chr3 88232058 88232251 -71367532 + B2_Mm1a SINE B2 1 193 0 5 1258 1142 140 6 0 chr3 88232341 88232519 -71367264 + B2_Mm2 SINE B2 2 180 -15 5 1258 252 0 0 0 chr3 88232527 88232555 -71367228 + (TTTA)n Simple_repeat Simple_repeat 1 28 0 5 1258 1039 93 0 0 chr3 88232557 88232697 -71367086 - B1_Mus2 SINE Alu -6 141 2 5 1258 524 246 16 25 chr3 88232705 88232826 -71366957 + Lx8 LINE L1 7232 7351 -122 5 1258 297 0 0 0 chr3 88233352 88233385 -71366398 + (A)n Simple_repeat Simple_repeat 1 33 0 5 1258 3530 168 45 62 chr3 88234028 88234668 -71365115 - RLTR40 LTR ERVK -76 741 111 5 1258 1230 27 0 0 chr3 88234668 88234815 -71364968 - B1_Mm SINE Alu 0 147 1 5 1258 3530 168 45 62 chr3 88234815 88234928 -71364855 - RLTR40 LTR ERVK -707 110 1 5 1258 452 270 76 49 chr3 88234939 88235045 -71364738 + B1F SINE Alu 2 108 -41 5 1258 2957 56 25 8 chr3 88235045 88235438 -71364345 - MTB LTR MaLR 0 400 1 5 1258 452 270 76 49 chr3 88235438 88235475 -71364308 + B1F SINE Alu 109 149 0 5 1258 324 352 55 43 chr3 88235481 88235548 -71364235 + ID SINE ID 6 72 -152 5 1258 396 0 0 0 chr3 88235548 88235592 -71364191 + (GA)n Simple_repeat Simple_repeat 1 44 0 5 1258 324 352 55 43 chr3 88235592 88235687 -71364096 + ID_B1 SINE B4 73 169 -55 5 1258 364 251 38 23 chr3 88235600 88235696 -71364087 + PB1D7 SINE Alu 5 104 -45 5 1258 563 221 168 0 chr3 88235754 88235903 -71363880 - ORR1B1 LTR MaLR -196 198 25 5 1258 578 289 5 57 chr3 88235953 88236162 -71363621 + B3A SINE B2 1 198 0 5 1258 244 180 60 0 chr3 88236178 88236228 -71363555 + B2_Mm2 SINE B2 1 53 -142 5 1258 707 168 119 23 chr3 88236255 88236432 -71363351 - B2_Mm2 SINE B2 -1 194 1 5 1258 243 0 0 0 chr3 88236445 88236472 -71363311 + (TTTTG)n Simple_repeat Simple_repeat 4 30 0 5 1258 963 93 43 0 chr3 88236509 88236649 -71363134 - B1_Mus1 SINE Alu 0 148 3 5 1258 303 140 0 66 chr3 88236660 88236721 -71363062 - B3 SINE B2 -159 57 1 5 1258 493 309 7 8 chr3 88236724 88236886 -71362897 - B3A SINE B2 -29 187 32 5 1258 653 214 12 83 chr3 88236931 88237099 -71362684 + B3 SINE B2 56 211 -5 5 1258 1202 35 0 0 chr3 88237128 88237273 -71362510 + B1_Mm SINE Alu 1 145 -2 5 1258 648 0 0 0 chr3 88237273 88237345 -71362438 + (GAA)n Simple_repeat Simple_repeat 2 73 0 5 1258 198 0 0 0 chr3 88237345 88237367 -71362416 + (CAG)n Simple_repeat Simple_repeat 1 22 0 5 1258 2964 106 6 62 chr3 88237428 88237542 -71362241 - RLTR1C LTR ERV1 -20 483 381 5 1258 1349 34 79 6 chr3 88237542 88237702 -71362081 + B2_Mm1t SINE B2 2 160 -33 5 1258 315 0 0 0 chr3 88237702 88237737 -71362046 + (TAAA)n Simple_repeat Simple_repeat 3 37 0 5 1258 1349 34 79 6 chr3 88237737 88237754 -71362029 + B2_Mm1t SINE B2 161 190 -3 5 1258 2964 106 6 62 chr3 88237754 88238151 -71361632 - RLTR1C LTR ERV1 -123 380 1 5 1258 356 272 0 0 chr3 88238151 88238243 -71361540 + B2_Mm2 SINE B2 7 98 -97 5 1258 670 143 94 75 chr3 88238252 88238411 -71361372 + B2_Mm2 SINE B2 6 167 -28 5 1258 233 333 20 0 chr3 88238612 88238714 -71361069 + L1MB3 LINE L1 6078 6181 -2 5 1258 684 161 368 0 chr3 88238732 88238887 -71360896 - B3 SINE B2 -4 212 1 5 1258 347 277 29 65 chr3 88238896 88239035 -71360748 - RSINE1 SINE B4 -29 136 3 5 1258 427 321 30 0 chr3 88239312 88239446 -71360337 - ID_B1 SINE B4 0 224 87 5 1258 21 0 0 0 chr3 88239899 88239920 -71359863 + AT_rich Low_complexity Low_complexity 1 21 0 5 1258 303 250 53 0 chr3 88241415 88241491 -71358292 - 5S rRNA rRNA -41 80 1 5 1258 649 316 26 13 chr3 88242676 88242904 -71356879 - B4A SINE B4 -14 278 48 5 1258 356 236 55 28 chr3 88243006 88243115 -71356668 - PB1D10 SINE Alu -5 112 1 6 1258 388 275 8 68 chr3 88243173 88243290 -71356493 - ID_B1 SINE B4 -114 110 1 6 1258 781 175 7 7 chr3 88243932 88244076 -71355707 - B1_Mur1 SINE Alu 0 149 6 6 1258 210 208 0 0 chr3 88244082 88244130 -71355653 + T-rich Low_complexity Low_complexity 1 48 0 6 1258 317 295 0 40 chr3 88244149 88244248 -71355535 + ID_B1 SINE B4 109 203 -21 6 1258 254 295 52 26 chr3 88244402 88244517 -71355266 + L2b LINE L2 3239 3356 -19 6 1258 306 0 0 0 chr3 88244963 88244997 -71354786 + (CGGGG)n Simple_repeat Simple_repeat 3 36 0 6 1258 250 242 106 32 chr3 88245353 88245447 -71354336 + MIR SINE MIR 48 148 -60 6 1258 21 0 0 0 chr3 88245521 88245542 -71354241 + AT_rich Low_complexity Low_complexity 1 21 0 6 1258 443 253 186 30 chr3 88245543 88245710 -71354073 - B3A SINE B2 -2 196 4 6 1258 404 217 43 0 chr3 88245723 88245815 -71353968 - PB1D10 SINE Alu -13 104 9 6 1258 303 277 96 0 chr3 88245732 88245826 -71353957 - ID_B1 SINE B4 -48 176 74 6 1258 691 128 110 8 chr3 88245923 88246041 -71353742 + B1_Mur2 SINE Alu 1 130 -19 6 1258 522 218 9 26 chr3 88246127 88246240 -71353543 - B3 SINE B2 0 216 106 6 1258 519 256 15 8 chr3 88246612 88246746 -71353037 + ID_B1 SINE B4 83 217 -7 6 1258 788 159 6 0 chr3 88246746 88246922 -71352861 + (CA)n Simple_repeat Simple_repeat 1 177 0 6 1258 542 249 57 99 chr3 88247035 88247227 -71352556 + B3A SINE B2 15 198 0 6 1258 576 164 181 0 chr3 88247372 88247488 -71352295 + B1_Mur4 SINE Alu 1 137 -13 6 1258 717 276 77 22 chr3 88247639 88247861 -71351922 + B4A SINE B4 1 234 -58 6 1258 525 212 0 0 chr3 88247874 88247973 -71351810 + B1_Mur1 SINE Alu 30 128 -21 6 1258 351 301 56 37 chr3 88248043 88248257 -71351526 - RMER12 LTR ERVK -334 988 771 6 1258 204 239 0 21 chr3 88248257 88248304 -71351479 + (CATA)n Simple_repeat Simple_repeat 1 46 0 6 1258 1243 91 32 5 chr3 88248337 88248525 -71351258 - B2_Mm2 SINE B2 0 195 3 6 1258 1130 142 55 36 chr3 88248531 88248751 -71351032 - URR1B DNA MER1_type 0 225 2 6 1258 311 339 9 0 chr3 88248773 88248888 -71350895 + PB1D10 SINE Alu 1 116 -1 6 1258 990 221 5 19 chr3 88248896 88249108 -71350675 + B3 SINE B2 7 215 -1 6 1258 265 294 50 29 chr3 88249108 88249235 -71350548 + L2a LINE L2 3239 3421 -5 6 1258 183 80 0 0 chr3 88249245 88249270 -71350513 + (A)n Simple_repeat Simple_repeat 1 25 0 6 1258 319 227 0 0 chr3 88249301 88249367 -71350416 - ID4 SINE ID -3 80 15 6 1258 1585 176 80 17 chr3 88249387 88249739 -71350044 + ORR1C2 LTR MaLR 11 384 0 6 1258 407 306 99 71 chr3 88249970 88250256 -71349527 + HAL1 LINE L1 1440 1750 -757 6 1258 543 282 51 37 chr3 88250256 88250473 -71349310 + ID_B1 SINE B4 4 223 -1 6 1258 407 306 99 71 chr3 88250473 88250850 -71348933 + HAL1 LINE L1 1751 2122 -385 6 1258 369 242 0 42 chr3 88251028 88251123 -71348660 + BC1_Mm scRNA scRNA 2 92 -60 6 1258 382 311 50 0 chr3 88251161 88251280 -71348503 - MER63A DNA AcHobo -37 173 49 6 1258 299 123 135 14 chr3 88251287 88251361 -71348422 + B1F2 SINE Alu 1 83 -66 6 1258 226 282 12 71 chr3 88251410 88251494 -71348289 - ID_B1 SINE B4 -62 162 84 6 1258 445 264 27 0 chr3 88251570 88251680 -71348103 + PB1D10 SINE Alu 1 113 -4 6 1258 1085 97 40 80 chr3 88252704 88252905 -71346878 - B2_Mm2 SINE B2 0 195 3 6 1258 540 207 246 0 chr3 88253006 88253185 -71346598 - ID_B1 SINE B4 0 224 2 6 1258 402 272 8 34 chr3 88253260 88253378 -71346405 - PB1D10 SINE Alu 0 117 3 6 1258 602 177 30 48 chr3 88254171 88254317 -71345466 - B1_Mur1 SINE Alu -1 148 1 6 1258 183 364 0 0 chr3 88256215 88256270 -71343513 + MIRb SINE MIR 40 94 -174 6 1258 360 0 0 0 chr3 88256627 88256667 -71343116 + (TC)n Simple_repeat Simple_repeat 1 40 0 6 1258 333 62 0 0 chr3 88258056 88258104 -71341679 + (TG)n Simple_repeat Simple_repeat 1 48 0 6 1258 411 214 8 118 chr3 88260018 88260145 -71339638 + MT2B LTR ERVL 152 264 -337 6 1258 930 113 0 21 chr3 88260035 88260180 -71339603 + B1_Mus2 SINE Alu 6 147 0 6 1258 474 273 26 20 chr3 88261498 88261651 -71338132 + MER45A DNA Tip100 25 178 0 6 1258 1108 170 4 108 chr3 88261767 88262018 -71337765 + URR1B DNA MER1_type 1 225 0 6 1258 402 21 0 0 chr3 88262664 88262711 -71337072 + (CA)n Simple_repeat Simple_repeat 1 47 0 6 1258 369 0 0 0 chr3 88263605 88263646 -71336137 + (CAAAAA)n Simple_repeat Simple_repeat 2 42 0 6 1258 213 39 0 0 chr3 88265657 88265683 -71334100 + (GA)n Simple_repeat Simple_repeat 2 27 0 6 1258 246 192 39 0 chr3 88265747 88265799 -71333984 + ID_B1 SINE B4 105 158 -66 6 1258 278 233 42 127 chr3 88265776 88265894 -71333889 + MT2B LTR ERVL 156 263 -338 6 1258 653 171 85 8 chr3 88265804 88265934 -71333849 + B1_Mur1 SINE Alu 9 148 -1 6 1258 438 20 0 0 chr3 88265945 88265996 -71333787 + (CA)n Simple_repeat Simple_repeat 2 52 0 6 1258 217 211 58 0 chr3 88265997 88266049 -71333734 + PB1 SINE Alu 71 125 -2 6 1258 311 106 0 0 chr3 88266003 88266050 -71333733 + ID_B1 SINE B4 176 222 -2 6 1258 802 278 26 4 chr3 88266050 88266278 -71333505 + B4A SINE B4 3 235 -57 6 1258 813 239 3 3 chr3 88266321 88266629 -71333154 + GA-rich Low_complexity Low_complexity 1 308 0 6 1258 1066 51 11 33 chr3 88266664 88266845 -71332938 + (GGAGA)n Simple_repeat Simple_repeat 4 180 0 6 1258 480 261 108 0 chr3 88266855 88266985 -71332798 + B3 SINE B2 73 216 0 6 1258 218 229 14 0 chr3 88267014 88267084 -71332699 + GA-rich Low_complexity Low_complexity 2 72 0 6 1258 965 274 28 48 chr3 88267153 88267242 -71332541 + B4 SINE B4 8 90 -202 6 1258 1313 87 5 5 chr3 88267242 88267428 -71332355 + B2_Mm1t SINE B2 2 187 -6 6 1258 965 274 28 48 chr3 88267428 88267629 -71332154 + B4 SINE B4 91 292 0 6 1258 1152 85 102 0 chr3 88267710 88267886 -71331897 + B2_Mm2 SINE B2 2 195 0 6 1258 564 304 12 12 chr3 88267891 88268054 -71331729 + B3A SINE B2 36 198 0 6 1258 451 237 11 0 chr3 88268221 88268314 -71331469 - ID_B1 SINE B4 -43 181 88 6 1258 203 257 83 109 chr3 88268495 88268687 -71331096 - L2 LINE L2 -1306 2113 1927 6 1258 342 233 256 0 chr3 88268770 88268860 -71330923 + B1_Mur1 SINE Alu 3 115 -34 6 1258 936 0 0 0 chr3 88268924 88269028 -71330755 + (TCTCCC)n Simple_repeat Simple_repeat 6 109 0 6 1258 198 0 0 0 chr3 88269031 88269053 -71330730 + (TCTG)n Simple_repeat Simple_repeat 3 24 0 6 1258 1172 212 223 27 chr3 88269207 88269615 -71330168 - RMER15 LTR ERVL 0 575 88 6 1258 290 211 70 0 chr3 88269670 88269741 -71330042 + RMER15 LTR ERVL 63 138 -437 6 1258 318 326 20 0 chr3 88270030 88270128 -71329655 - RMER15-int LTR ERVL -6 4993 4894 6 1258 1158 78 72 0 chr3 88270128 88270295 -71329488 + B2_Mm1t SINE B2 1 179 -14 6 1258 294 131 360 20 chr3 88270347 88270447 -71329336 + B2_Mm2 SINE B2 47 180 -15 6 1258 459 0 0 0 chr3 88270447 88270498 -71329285 + (GAAA)n Simple_repeat Simple_repeat 4 54 0 6 1258 327 198 136 0 chr3 88270499 88270580 -71329203 - RMER15-int LTR ERVL -100 4899 4808 6 1258 898 217 66 0 chr3 88270622 88270820 -71328963 + B3 SINE B2 1 211 -5 6 1258 984 123 0 0 chr3 88270853 88270991 -71328792 + B1_Mus1 SINE Alu 4 141 -7 6 1258 701 234 117 21 chr3 88271364 88271552 -71328231 - B3 SINE B2 -10 206 1 6 1258 215 61 0 29 chr3 88271589 88271623 -71328160 + (TG)n Simple_repeat Simple_repeat 1 33 0 6 1258 461 275 49 7 chr3 88271625 88271768 -71328015 - RSINE1 SINE B4 -13 152 4 6 1258 737 267 11 11 chr3 88271820 88272009 -71327774 - B3 SINE B2 0 216 28 6 1258 410 307 70 49 chr3 88272035 88272220 -71327563 - RMER15-int LTR ERVL -3370 1629 1441 6 1258 487 235 0 50 chr3 88272237 88272358 -71327425 + PB1D9 SINE Alu 6 120 0 6 1258 687 198 147 21 chr3 88272838 88273029 -71326754 - B3 SINE B2 0 216 2 6 1258 1352 75 21 0 chr3 88273052 88273240 -71326543 - B2_Mm2 SINE B2 -1 194 3 6 1258 26 50 0 0 chr3 88273250 88273290 -71326493 + AT_rich Low_complexity Low_complexity 1 40 0 6 1258 243 180 0 107 chr3 88273313 88273348 -71326435 + ORR1B1 LTR MaLR 1 29 -355 6 1258 4129 131 37 19 chr3 88273348 88274073 -71325710 + RMER6A LTR ERVK 1 738 -18 6 1258 1513 199 18 2 chr3 88274078 88274412 -71325371 + ORR1B1 LTR MaLR 24 394 0 6 1258 248 193 17 17 chr3 88274412 88274469 -71325314 - B3A SINE B2 -78 120 64 6 1258 1847 141 132 6 chr3 88274487 88274836 -71324947 - ORR1B1 LTR MaLR 0 394 2 6 1258 1507 195 101 111 chr3 88274921 88275434 -71324349 + RLTR18B LTR ERVK 1 508 -4 6 1258 630 206 7 42 chr3 88275464 88275606 -71324177 + B1F2 SINE Alu 2 138 -11 6 1258 611 25 25 0 chr3 88275606 88275686 -71324097 + (GAAA)n Simple_repeat Simple_repeat 2 83 0 6 1258 1427 51 0 0 chr3 88275720 88275895 -71323888 - B2_Mm1a SINE B2 -18 175 1 6 1258 325 298 26 17 chr3 88275904 88276020 -71323763 - RMER15 LTR ERVL -105 470 354 6 1258 235 227 26 39 chr3 88276248 88276326 -71323457 + L1MA7 LINE L1 6188 6264 -27 6 1258 600 134 0 22 chr3 88276326 88276463 -71323320 + (TA)n Simple_repeat Simple_repeat 1 134 0 6 1258 559 198 0 0 chr3 88276590 88276696 -71323087 + PB1D7 SINE Alu 13 118 -2 6 1258 250 261 0 129 chr3 88276614 88276715 -71323068 + MT2B2 LTR ERVL 194 281 -303 6 1258 848 127 14 0 chr3 88276738 88276880 -71322903 + B1_Mur3 SINE Alu 5 148 -1 6 1258 231 36 0 0 chr3 88277778 88277806 -71321977 + (TGG)n Simple_repeat Simple_repeat 2 29 0 6 1258 424 202 123 19 chr3 88277833 88277939 -71321844 - PB1D9 SINE Alu -2 118 2 7 1258 704 134 0 7 chr3 88278052 88278091 -71321692 + (TTCC)n Simple_repeat Simple_repeat 2 40 0 7 1258 1240 48 0 0 chr3 88278091 88278238 -71321545 - B1_Mus1 SINE Alu -1 147 1 7 1258 704 134 0 7 chr3 88278238 88278333 -71321450 + (TTCC)n Simple_repeat Simple_repeat 3 97 0 7 1258 230 0 33 0 chr3 88278345 88278375 -71321408 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 7 1258 590 205 8 8 chr3 88278375 88278483 -71321300 - PB1D9 SINE Alu -9 111 3 7 1258 189 147 0 0 chr3 88279036 88279070 -71320713 + (GGA)n Simple_repeat Simple_repeat 3 36 0 7 1258 1065 57 0 0 chr3 88279770 88279911 -71319872 - B1_Mm SINE Alu 0 147 7 7 1258 546 221 85 90 chr3 88279775 88279964 -71319819 - B4 SINE B4 -71 221 34 7 1258 1066 76 13 33 chr3 88280101 88280251 -71319532 + B1_Mus2 SINE Alu 1 147 0 7 1258 716 203 7 22 chr3 88280263 88280399 -71319384 - B1_Mur1 SINE Alu -13 136 3 7 1258 232 325 75 25 chr3 88280399 88280519 -71319264 + MTEa LTR MaLR 1 126 -253 7 1258 325 316 116 39 chr3 88280540 88280747 -71319036 + ID_B1 SINE B4 1 223 -1 7 1258 303 293 97 8 chr3 88280733 88280867 -71318916 + MTEa LTR MaLR 161 306 -73 7 1258 307 217 17 0 chr3 88280877 88280937 -71318846 + RSINE1 SINE B4 12 72 -93 7 1258 237 246 0 0 chr3 88280942 88281003 -71318780 + A-rich Low_complexity Low_complexity 1 61 0 7 1258 735 62 0 0 chr3 88281006 88281103 -71318680 + B2_Mm2 SINE B2 2 98 -97 7 1258 923 71 0 0 chr3 88281105 88281232 -71318551 - B1_Mus1 SINE Alu -21 127 1 7 1258 510 179 35 18 chr3 88281232 88281297 -71318486 + B2_Mm2 SINE B2 87 153 -42 7 1258 351 0 0 0 chr3 88281297 88281336 -71318447 + (CATA)n Simple_repeat Simple_repeat 4 42 0 7 1258 441 179 0 0 chr3 88281345 88281429 -71318354 + GA-rich Low_complexity Low_complexity 1 84 0 7 1258 288 0 0 0 chr3 88282164 88282196 -71317587 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 7 1258 378 182 0 29 chr3 88282203 88282271 -71317512 - B1F SINE Alu -72 77 12 7 1258 301 306 14 76 chr3 88282205 88282350 -71317433 - ID_B1 SINE B4 -71 153 18 7 1258 433 292 142 7 chr3 88282451 88282599 -71317184 + B3A SINE B2 1 168 -30 7 1258 657 193 29 7 chr3 88282630 88282766 -71317017 + B1_Mur2 SINE Alu 3 141 -8 7 1258 438 103 0 0 chr3 88282842 88282920 -71316863 + (T)n Simple_repeat Simple_repeat 1 78 0 7 1258 1183 62 14 0 chr3 88282920 88283065 -71316718 - B1_Mus1 SINE Alu 0 148 2 7 1258 1474 201 189 26 chr3 88283065 88283484 -71316299 + RMER15 LTR ERVL 45 531 -44 7 1258 1794 151 42 36 chr3 88283494 88283851 -71315932 + RMER6B LTR ERVK 17 375 -86 7 1258 411 245 104 0 chr3 88283914 88284020 -71315763 - RSINE1 SINE B4 -38 127 11 7 1258 746 151 70 28 chr3 88284075 88284218 -71315565 - B1_Mur2 SINE Alu 0 149 1 7 1258 334 252 6 169 chr3 88284234 88284406 -71315377 - B3A SINE B2 -10 188 45 7 1258 1168 88 0 0 chr3 88284491 88284638 -71315145 - B1_Mus1 SINE Alu -1 147 1 7 1258 228 255 0 0 chr3 88284649 88284696 -71315087 - ID_B1 SINE B4 -8 216 170 7 1258 210 330 36 45 chr3 88284696 88284760 -71315023 - PB1D7 SINE Alu -8 112 3 7 1258 228 111 0 0 chr3 88285833 88285869 -71313914 + (A)n Simple_repeat Simple_repeat 1 36 0 7 1258 428 230 97 9 chr3 88288164 88288278 -71311505 + PB1 SINE Alu 2 125 -2 7 1258 249 196 0 0 chr3 88288284 88288335 -71311448 + GA-rich Low_complexity Low_complexity 3 53 0 7 1258 180 0 0 0 chr3 88289415 88289435 -71310348 + (TTTG)n Simple_repeat Simple_repeat 4 23 0 7 1258 1171 68 0 7 chr3 88289456 88289604 -71310179 - B1_Mm SINE Alu 0 147 1 7 1258 896 225 115 0 chr3 88289609 88289809 -71309974 - ID_B1 SINE B4 0 224 2 7 1258 297 309 0 12 chr3 88289840 88289922 -71309861 + ID2 SINE ID 3 83 0 7 1258 628 287 0 7 chr3 88291034 88291178 -71308605 + RSINE1 SINE B4 3 145 -20 7 1258 1496 52 15 20 chr3 88291777 88291973 -71307810 + B2_Mm2 SINE B2 1 195 0 7 1258 445 294 55 72 chr3 88293353 88293550 -71306233 + B4A SINE B4 2 206 -86 7 1258 387 0 0 0 chr3 88293550 88293593 -71306190 + (CAAAA)n Simple_repeat Simple_repeat 3 45 0 7 1258 435 300 112 65 chr3 88293593 88293655 -71306128 + B4 SINE B4 207 273 -19 7 1258 265 91 0 26 chr3 88294368 88294426 -71305357 - MIR SINE MIR -107 169 111 7 1258 654 137 51 0 chr3 88295391 88295508 -71304275 - B1_Mus2 SINE Alu -22 125 3 7 1258 290 250 102 51 chr3 88295403 88295521 -71304262 - B4 SINE B4 -88 204 81 7 1258 216 0 0 0 chr3 88295521 88295545 -71304238 + (T)n Simple_repeat Simple_repeat 1 24 0 7 1258 1099 61 98 52 chr3 88295571 88295714 -71304069 + B2_Mm1t SINE B2 1 160 -33 7 1258 351 0 0 0 chr3 88295714 88295753 -71304030 + (TAAA)n Simple_repeat Simple_repeat 3 41 0 7 1258 1099 61 98 52 chr3 88295753 88295783 -71304000 + B2_Mm1t SINE B2 161 182 -11 7 1258 679 188 1 7 chr3 88295790 88295929 -71303854 + B1_Mur1 SINE Alu 10 148 -1 7 1258 899 40 176 0 chr3 88295935 88296060 -71303723 + B1_Mus2 SINE Alu 1 147 0 7 1258 351 343 130 25 chr3 88296063 88296302 -71303481 + L1MC4 LINE L1 1079 1342 -4873 7 1258 24 0 0 0 chr3 88297119 88297143 -71302640 + GC_rich Low_complexity Low_complexity 1 24 0 7 1258 770 175 179 36 chr3 88297376 88297572 -71302211 - ID_B1 SINE B4 0 224 1 7 1258 986 129 0 13 chr3 88298406 88298555 -71301228 + B1_Mur4 SINE Alu 2 148 -2 7 1258 500 149 0 11 chr3 88298559 88298654 -71301129 + GA-rich Low_complexity Low_complexity 3 96 0 7 1258 242 307 111 22 chr3 88300356 88300517 -71299266 - MIR3 SINE MIR -38 230 55 7 1258 998 110 0 6 chr3 88300959 88301115 -71298668 + (TTTC)n Simple_repeat Simple_repeat 2 156 0 7 1258 910 67 0 0 chr3 88301115 88301234 -71298549 - B1_Mus1 SINE Alu -12 136 18 7 1258 362 220 0 130 chr3 88301138 88301253 -71298530 - MT2B LTR ERVL -337 264 165 7 1258 432 318 48 53 chr3 88301869 88302078 -71297705 - ID_B1 SINE B4 -15 209 2 7 1258 985 139 9 0 chr3 88302080 88302520 -71297263 + (TG)n Simple_repeat Simple_repeat 1 444 0 7 1258 27 0 0 0 chr3 88302628 88302655 -71297128 + AT_rich Low_complexity Low_complexity 1 27 0 7 1258 725 239 31 83 chr3 88302660 88302852 -71296931 - B3A SINE B2 -16 182 1 7 1258 325 202 0 154 chr3 88302866 88302989 -71296794 + MT2B LTR ERVL 155 258 -343 7 1258 826 142 14 14 chr3 88302889 88303032 -71296751 + B1_Mur4 SINE Alu 7 149 -1 7 1258 1126 76 21 0 chr3 88303034 88303179 -71296604 + B1_Mus1 SINE Alu 1 148 0 7 1258 611 237 59 0 chr3 88303218 88303353 -71296430 + B1_Mur1 SINE Alu 6 148 -1 7 1258 1189 43 0 0 chr3 88303357 88303495 -71296288 + B1_Mm SINE Alu 1 138 -9 7 1258 222 37 0 0 chr3 88303495 88303522 -71296261 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 7 1258 438 196 96 26 chr3 88303592 88303707 -71296076 + RSINE1 SINE B4 5 127 -38 7 1258 432 0 0 0 chr3 88303791 88303839 -71295944 + (TTTTG)n Simple_repeat Simple_repeat 3 50 0 7 1258 412 226 64 36 chr3 88303839 88303949 -71295834 - B1F2 SINE Alu -12 137 25 7 1258 513 269 59 20 chr3 88303971 88304123 -71295660 + RSINE1 SINE B4 8 165 0 7 1258 206 291 0 18 chr3 88304423 88304450 -71295333 + C-rich Low_complexity Low_complexity 29 55 0 7 1258 1009 48 80 0 chr3 88304450 88304575 -71295208 - B1_Mus1 SINE Alu -13 135 1 7 1258 206 291 0 18 chr3 88304575 88304603 -71295180 + C-rich Low_complexity Low_complexity 1 28 0 7 1258 192 77 0 0 chr3 88305695 88305721 -71294062 + (TAGGG)n Simple_repeat Simple_repeat 5 30 0 7 1258 206 75 50 0 chr3 88308575 88308615 -71291168 + (TTTTTG)n Simple_repeat Simple_repeat 1 42 0 7 1258 1030 45 0 0 chr3 88308661 88308795 -71290988 - B1_Mm SINE Alu 0 147 14 7 1258 371 286 89 83 chr3 88308790 88308801 -71290982 - B4 SINE B4 -57 235 181 7 1258 837 181 0 0 chr3 88308801 88308939 -71290844 - B1_Mus2 SINE Alu -1 146 9 7 1258 371 286 89 83 chr3 88308939 88308958 -71290825 - B4 SINE B4 -57 180 67 7 1258 182 276 51 17 chr3 88310087 88310146 -71289637 + MIR SINE MIR 91 151 -57 7 1258 401 229 0 20 chr3 88310236 88310334 -71289449 - L2a LINE L2 0 3426 3331 7 1258 362 168 3 0 chr3 88310343 88310390 -71289393 + PB1D9 SINE Alu 1 58 -69 7 1258 180 0 0 0 chr3 88310400 88310420 -71289363 + (GACTG)n Simple_repeat Simple_repeat 4 23 0 7 1258 289 291 87 0 chr3 88310420 88310465 -71289318 + PB1 SINE Alu 59 111 -16 7 1258 259 303 13 26 chr3 88310465 88310487 -71289296 + ID4 SINE ID 11 77 -6 7 1258 325 245 43 0 chr3 88310511 88310605 -71289178 + (CATATA)n Simple_repeat Simple_repeat 6 103 0 7 1258 589 216 114 43 chr3 88310605 88310745 -71289038 - ID_B1 SINE B4 -66 158 9 7 1258 339 118 118 0 chr3 88310765 88310833 -71288950 + MurSatRep1 Unknown Unknown 220 295 -1842 7 1258 297 0 0 0 chr3 88310842 88310875 -71288908 + (TG)n Simple_repeat Simple_repeat 1 33 0 7 1258 411 329 87 7 chr3 88310880 88311030 -71288753 - RSINE1 SINE B4 -2 163 2 7 1258 400 217 12 12 chr3 88311455 88311539 -71288244 + PB1D9 SINE Alu 35 118 -2 7 1258 599 301 37 41 chr3 88311777 88311995 -71287788 - MER20 DNA MER1_type -1 218 2 7 1258 187 338 112 0 chr3 88312362 88312442 -71287341 - MIRb SINE MIR -70 198 110 7 1258 180 0 0 0 chr3 88312877 88312897 -71286886 + (TTG)n Simple_repeat Simple_repeat 2 21 0 7 1258 509 45 198 22 chr3 88312897 88312988 -71286795 - B1_Mus1 SINE Alu -2 146 40 7 1258 21 0 0 0 chr3 88313027 88313048 -71286735 + AT_rich Low_complexity Low_complexity 1 21 0 8 1258 552 114 26 1 chr3 88313054 88313163 -71286620 + B1_Mm SINE Alu 3 120 0 8 1258 404 276 0 18 chr3 88313505 88313623 -71286160 - MIRc SINE MIR -82 180 68 8 1258 230 364 0 0 chr3 88314323 88314400 -71285383 - MER81 DNA AcHobo -1 113 37 8 1258 716 117 50 8 chr3 88314472 88314593 -71285190 + B1_Mm SINE Alu 1 126 -21 8 1258 211 146 0 24 chr3 88314696 88314738 -71285045 + (CAAA)n Simple_repeat Simple_repeat 3 43 0 8 1258 230 341 78 16 chr3 88314738 88314866 -71284917 + B1F1 SINE Alu 1 136 -13 8 1258 1021 191 89 5 chr3 88314920 88315110 -71284673 + B3 SINE B2 3 208 -8 8 1258 1149 88 0 0 chr3 88315169 88315316 -71284467 - B1_Mus1 SINE Alu 0 148 2 8 1258 486 49 0 0 chr3 88316220 88316281 -71283502 + (GA)n Simple_repeat Simple_repeat 2 62 0 8 1258 22 0 0 0 chr3 88316670 88316692 -71283091 + AT_rich Low_complexity Low_complexity 1 22 0 8 1258 25 0 0 0 chr3 88317191 88317216 -71282567 + GC_rich Low_complexity Low_complexity 1 25 0 8 1258 232 266 134 50 chr3 88317935 88318054 -71281729 + B1_Mur1 SINE Alu 5 133 -16 8 1258 183 80 0 0 chr3 88318082 88318107 -71281676 + (GGA)n Simple_repeat Simple_repeat 2 26 0 8 1258 400 299 8 17 chr3 88318925 88319044 -71280739 - B1_Mur4 SINE Alu -21 129 12 8 1258 359 301 51 95 chr3 88319060 88319218 -71280565 - ID_B1 SINE B4 0 224 74 8 1258 316 300 25 0 chr3 88319220 88319300 -71280483 - B1F SINE Alu -56 93 12 8 1258 1106 148 0 47 chr3 88319780 88319972 -71279811 + URR1A DNA MER1_type 1 183 -43 8 1258 629 230 184 6 chr3 88320923 88321102 -71278681 + ID_B1 SINE B4 1 211 -13 8 1258 258 105 0 0 chr3 88321188 88321226 -71278557 + (CATG)n Simple_repeat Simple_repeat 3 40 0 8 1258 212 0 36 0 chr3 88321321 88321349 -71278434 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 8 1258 1178 75 0 0 chr3 88321364 88321510 -71278273 + B1_Mus2 SINE Alu 2 147 0 8 1258 225 65 0 0 chr3 88321510 88321541 -71278242 + (A)n Simple_repeat Simple_repeat 1 31 0 8 1258 358 127 0 0 chr3 88321579 88321634 -71278149 - B2_Mm2 SINE B2 -94 101 47 8 1258 559 134 394 0 chr3 88321666 88321793 -71277990 - B2_Mm1t SINE B2 -14 179 3 8 1258 1214 62 0 0 chr3 88322635 88322780 -71277003 + B1_Mus1 SINE Alu 4 148 0 8 1258 1264 85 68 0 chr3 88322892 88323052 -71276731 + B2_Mm1a SINE B2 1 161 -32 8 1258 489 34 0 0 chr3 88323052 88323111 -71276672 + (TAGA)n Simple_repeat Simple_repeat 4 62 0 8 1258 1264 85 68 0 chr3 88323111 88323126 -71276657 + B2_Mm1a SINE B2 162 186 -7 8 1258 363 275 77 0 chr3 88323139 88323230 -71276553 + B1F SINE Alu 35 132 -17 8 1258 273 259 78 61 chr3 88323251 88323366 -71276417 + RSINE1 SINE B4 49 165 0 8 1258 321 122 0 0 chr3 88323398 88323451 -71276332 + B1F SINE Alu 14 66 -51 8 1258 450 96 0 0 chr3 88323457 88323530 -71276253 + (CA)n Simple_repeat Simple_repeat 1 73 0 8 1258 2348 78 55 0 chr3 88323530 88323838 -71275945 + ORR1A2 LTR MaLR 1 325 -2 8 1258 588 250 0 68 chr3 88323869 88324015 -71275768 + RSINE1 SINE B4 12 147 -18 8 1258 433 256 39 31 chr3 88324430 88324559 -71275224 - RSINE1 SINE B4 -34 131 2 8 1258 455 176 21 52 chr3 88324622 88324718 -71275065 - B3 SINE B2 -123 93 1 8 1258 419 232 23 4 chr3 88324862 88324998 -71274785 - B3 SINE B2 0 198 58 8 1258 977 116 43 0 chr3 88325010 88325148 -71274635 - B1_Mur4 SINE Alu -6 144 1 8 1258 682 225 8 0 chr3 88325457 88325586 -71274197 - B1_Mur3 SINE Alu -19 130 1 8 1258 180 0 0 0 chr3 88326375 88326395 -71273388 + (TC)n Simple_repeat Simple_repeat 2 21 0 8 1258 537 236 0 26 chr3 88326395 88326508 -71273275 + PB1D7 SINE Alu 11 120 0 8 1258 501 324 5 70 chr3 88326518 88326541 -71273242 - B4 SINE B4 -47 245 172 8 1258 778 165 21 35 chr3 88326541 88326685 -71273098 - B1_Mur2 SINE Alu 0 149 8 8 1258 317 271 0 142 chr3 88326583 88326738 -71273045 - MT2B LTR ERVL -344 257 125 8 1258 501 324 5 70 chr3 88326685 88326717 -71273066 - B4 SINE B4 -47 171 60 8 1258 201 333 15 0 chr3 88326752 88326818 -71272965 - MIRb SINE MIR -85 183 117 8 1258 367 295 84 28 chr3 88327365 88327508 -71272275 + MER63B DNA AcHobo 284 434 -2 8 1258 624 264 136 23 chr3 88327626 88327847 -71271936 + B4A SINE B4 27 272 -20 8 1258 216 0 0 0 chr3 88327886 88327910 -71271873 + (CA)n Simple_repeat Simple_repeat 1 24 0 8 1258 200 234 59 0 chr3 88327961 88328025 -71271758 - L2b LINE L2 0 3387 3321 8 1258 507 261 30 8 chr3 88328771 88328902 -71270881 - ID_B1 SINE B4 -7 217 84 8 1258 805 198 167 21 chr3 88328907 88329093 -71270690 - B3 SINE B2 -1 215 3 8 1258 249 350 50 21 chr3 88329103 88329243 -71270540 - L2 LINE L2 -779 2640 2497 8 1258 315 0 0 0 chr3 88329438 88329473 -71270310 + (CTG)n Simple_repeat Simple_repeat 2 36 0 8 1258 481 304 14 14 chr3 88329505 88329645 -71270138 + ID_B1 SINE B4 85 224 0 8 1258 533 151 187 32 chr3 88329646 88329769 -71270014 + B1F2 SINE Alu 1 142 -7 8 1258 441 0 0 0 chr3 88330588 88330637 -71269146 + (TC)n Simple_repeat Simple_repeat 2 50 0 8 1258 319 261 54 0 chr3 88330646 88330757 -71269026 + MIRb SINE MIR 77 193 -75 8 1258 427 221 47 0 chr3 88330771 88330857 -71268926 + RSINE1 SINE B4 8 97 -68 8 1258 226 105 0 50 chr3 88330862 88330902 -71268881 + B2_Mm2 SINE B2 3 40 -155 8 1258 506 111 173 48 chr3 88330904 88331008 -71268775 + PB1D9 SINE Alu 4 120 0 8 1258 539 221 27 39 chr3 88331019 88331185 -71268598 + B3 SINE B2 27 192 -3 8 1258 384 222 180 100 chr3 88332086 88332236 -71267547 + RSINE1 SINE B4 4 165 0 8 1258 414 258 60 120 chr3 88332396 88332530 -71267253 + ID_B1 SINE B4 84 210 -14 8 1258 861 84 0 0 chr3 88332530 88332649 -71267134 + (GAAA)n Simple_repeat Simple_repeat 2 120 0 8 1258 414 258 60 120 chr3 88332649 88332664 -71267119 + ID_B1 SINE B4 211 224 0 8 1258 493 302 14 41 chr3 88332686 88332831 -71266952 + RSINE1 SINE B4 25 165 0 8 1258 210 135 18 88 chr3 88332851 88332865 -71266918 + A-rich Low_complexity Low_complexity 2 12 0 8 1258 1051 58 71 21 chr3 88332865 88333005 -71266778 + B1_Mus1 SINE Alu 2 148 0 8 1258 210 135 18 88 chr3 88333005 88333047 -71266736 + A-rich Low_complexity Low_complexity 13 54 0 8 1258 209 246 0 30 chr3 88333469 88333571 -71266212 + (CAGA)n Simple_repeat Simple_repeat 1 98 0 8 1258 205 274 27 0 chr3 88334817 88334890 -71264893 + GA-rich Low_complexity Low_complexity 1 75 0 8 1258 27 0 0 0 chr3 88335799 88335826 -71263957 + GC_rich Low_complexity Low_complexity 1 27 0 8 1258 293 225 0 11 chr3 88336211 88336301 -71263482 + C-rich Low_complexity Low_complexity 1 89 0 8 1258 249 212 25 25 chr3 88336516 88336637 -71263146 + (CCG)n Simple_repeat Simple_repeat 2 122 0 8 1258 203 133 0 0 chr3 88340751 88340781 -71259002 + (TCC)n Simple_repeat Simple_repeat 2 31 0 8 1258 324 64 0 0 chr3 88341553 88341600 -71258183 + (CA)n Simple_repeat Simple_repeat 1 47 0 8 1259 22 35 0 0 chr3 88343083 88343112 -71256671 + AT_rich Low_complexity Low_complexity 1 29 0 8 1259 363 200 128 37 chr3 88344365 88344474 -71255309 - PB1D7 SINE Alu -1 119 1 8 1259 269 320 89 44 chr3 88346757 88346937 -71252846 - MIR SINE MIR -10 252 65 8 1259 452 188 137 10 chr3 88347921 88348023 -71251760 - PB1D7 SINE Alu -5 115 1 8 1259 606 116 11 0 chr3 88348426 88348521 -71251262 + B1_Mur1 SINE Alu 31 126 -23 8 1259 472 238 167 0 chr3 88349827 88349953 -71249830 - B3 SINE B2 0 216 70 8 1259 207 231 0 55 chr3 88349994 88350049 -71249734 + MIRm SINE MIR 98 149 -127 8 1259 217 336 149 0 chr3 88350051 88350158 -71249625 - MIR SINE MIR -3 259 137 8 1259 1341 81 5 31 chr3 88350181 88350372 -71249411 - B2_Mm2 SINE B2 -8 187 2 8 1259 279 0 0 0 chr3 88350373 88350404 -71249379 + (TTA)n Simple_repeat Simple_repeat 2 32 0 8 1259 1068 117 0 0 chr3 88350404 88350549 -71249234 - B1_Mus1 SINE Alu -2 146 2 8 1259 252 77 0 0 chr3 88351499 88351538 -71248245 + (G)n Simple_repeat Simple_repeat 1 39 0 8 1259 23 0 0 0 chr3 88352940 88352963 -71246820 + AT_rich Low_complexity Low_complexity 1 23 0 8 1259 594 192 176 32 chr3 88353123 88353311 -71246472 + B3 SINE B2 1 215 -1 8 1259 1131 97 0 0 chr3 88353321 88353465 -71246318 + B1_Mm SINE Alu 4 147 0 8 1259 378 268 94 35 chr3 88354152 88354322 -71245461 + RLTR12B LTR ERVK 5 184 -344 8 1259 308 305 70 83 chr3 88354335 88354564 -71245219 + RLTR12B LTR ERVK 261 486 -42 8 1259 720 246 11 50 chr3 88354961 88355179 -71244604 + B3 SINE B2 10 211 -5 8 1259 227 309 0 29 chr3 88355400 88355470 -71244313 - ID4 SINE ID -6 77 10 8 1259 820 112 52 7 chr3 88355787 88355922 -71243861 + B1_Mus1 SINE Alu 8 148 0 8 1259 268 329 86 79 chr3 88355789 88355941 -71243842 + B4A SINE B4 94 246 -46 8 1259 239 185 32 0 chr3 88355949 88356006 -71243777 - B1F SINE Alu -50 70 10 8 1259 362 301 58 22 chr3 88356180 88356319 -71243464 + B1F2 SINE Alu 2 145 -4 8 1259 294 273 0 53 chr3 88357606 88357757 -71242026 + (CGGGG)n Simple_repeat Simple_repeat 5 147 0 8 1259 24 32 0 0 chr3 88357919 88357950 -71241833 + GC_rich Low_complexity Low_complexity 1 31 0 8 1259 276 30 0 0 chr3 88358234 88358267 -71241516 + (TC)n Simple_repeat Simple_repeat 1 33 0 8 1259 351 177 229 0 chr3 88358407 88358503 -71241280 + MamRep1879 DNA hAT? 6 123 -93 9 1259 189 0 0 0 chr3 88358506 88358527 -71241256 + (TTGTG)n Simple_repeat Simple_repeat 4 24 0 9 1259 567 132 83 19 chr3 88358735 88358843 -71240940 + B1_Mur2 SINE Alu 23 137 -12 9 1259 265 0 0 70 chr3 88358843 88358886 -71240897 + (TTAA)n Simple_repeat Simple_repeat 1 40 0 9 1259 1712 26 0 0 chr3 88360095 88360287 -71239496 - B2_Mm1a SINE B2 0 193 2 9 1259 182 386 78 0 chr3 88361036 88361197 -71238586 - L2c LINE L2 -181 3206 3031 9 1259 342 115 0 0 chr3 88361257 88361318 -71238465 + (TTTTC)n Simple_repeat Simple_repeat 2 62 0 9 1259 1871 189 66 56 chr3 88361328 88361931 -71237852 - RMER4A LTR ERVK 0 585 33 9 1259 861 184 7 7 chr3 88361961 88362109 -71237674 - B1_Mus1 SINE Alu 0 148 1 9 1259 581 196 45 0 chr3 88362141 88362253 -71237530 - B1_Mur4 SINE Alu -20 130 14 9 1259 212 365 56 86 chr3 88362155 88362317 -71237466 - B4 SINE B4 -88 204 48 9 1259 207 337 22 34 chr3 88362519 88362608 -71237175 + MIRb SINE MIR 100 187 -81 9 1259 1212 29 0 0 chr3 88362707 88362845 -71236938 - B1_Mus2 SINE Alu -9 138 1 9 1259 210 292 31 0 chr3 88362975 88363040 -71236743 - L2a LINE L2 0 3426 3360 9 1259 1247 108 38 0 chr3 88363125 88363311 -71236472 - B2_Mm2 SINE B2 -1 194 2 9 1259 324 0 0 0 chr3 88363993 88364029 -71235754 + (TG)n Simple_repeat Simple_repeat 2 37 0 9 1259 508 132 87 22 chr3 88364177 88364289 -71235494 - B1F2 SINE Alu 0 149 34 9 1259 252 280 74 0 chr3 88364301 88364378 -71235405 - B1F SINE Alu -9 140 28 9 1259 916 204 44 88 chr3 88364427 88364653 -71235130 - B3 SINE B2 0 216 1 9 1259 351 282 88 129 chr3 88364688 88364859 -71234924 + ID_B1 SINE B4 7 170 -54 9 1259 305 260 167 0 chr3 88364787 88364883 -71234900 + PB1D10 SINE Alu 5 116 -1 9 1259 385 286 20 0 chr3 88364886 88364984 -71234799 + ID_B1 SINE B4 16 115 -109 9 1259 184 333 110 8 chr3 88365120 88365238 -71234545 + MIRb SINE MIR 25 154 -114 9 1259 296 206 88 0 chr3 88365428 88365496 -71234287 + ID_B1 SINE B4 98 171 -53 9 1259 278 200 176 0 chr3 88365496 88365513 -71234270 + PB1D10 SINE Alu 17 116 -1 9 1259 353 192 77 0 chr3 88365518 88365596 -71234187 - Charlie1 DNA MER1_type -45 2736 2653 9 1259 180 250 130 13 chr3 88367723 88367800 -71231983 + MIR3 SINE MIR 92 177 -31 9 1259 307 320 140 8 chr3 88368509 88368695 -71231088 + MIR SINE MIR 30 242 -26 9 1259 209 108 27 0 chr3 88369401 88369438 -71230345 + (TTTTC)n Simple_repeat Simple_repeat 2 39 0 9 1259 348 288 9 18 chr3 88369441 88369554 -71230229 - PB1D10 SINE Alu -1 116 5 9 1259 710 136 72 0 chr3 88369966 88370091 -71229692 - B1_Mus2 SINE Alu -5 142 9 9 1259 202 271 49 39 chr3 88370145 88370252 -71229531 - MIR SINE MIR -88 188 70 9 1259 733 194 50 7 chr3 88370880 88371020 -71228763 - B1_Mus2 SINE Alu 0 147 2 9 1259 237 101 87 0 chr3 88371029 88371098 -71228685 + T-rich Low_complexity Low_complexity 1 75 0 9 1259 1170 29 0 60 chr3 88371125 88371274 -71228509 - B1_Mus1 SINE Alu -7 141 2 9 1259 1185 175 34 14 chr3 88371287 88371496 -71228287 - B3 SINE B2 0 216 4 9 1259 527 172 40 0 chr3 88371812 88371924 -71227859 + PB1D10 SINE Alu 1 115 -2 9 1259 263 273 82 0 chr3 88373724 88373834 -71225949 - PB1D7 SINE Alu -1 119 1 9 1259 3468 143 82 22 chr3 88374018 88374690 -71225093 - RMER19A LTR ERVK -1 736 25 9 1259 439 241 27 141 chr3 88374733 88374917 -71224866 - RSINE1 SINE B4 0 165 3 9 1259 496 61 0 0 chr3 88375047 88375113 -71224670 + B1_Mus2 SINE Alu 1 66 -81 9 1259 235 271 65 76 chr3 88375113 88375136 -71224647 + MT2B2 LTR ERVL 163 250 -334 9 1259 581 221 0 16 chr3 88375170 88375294 -71224489 + B1_Mur2 SINE Alu 28 149 0 9 1259 279 283 61 38 chr3 88375295 88375427 -71224356 + L1MC3 LINE L1 6855 6989 -796 9 1259 1162 55 7 14 chr3 88375487 88375634 -71224149 - B1_Mus2 SINE Alu 0 147 2 9 1259 539 286 47 144 chr3 88375635 88375995 -71223788 - RLTR12B LTR ERVK -76 452 128 9 1259 893 158 56 43 chr3 88376161 88376226 -71223557 - L1_Mur2 LINE L1 -4069 1808 1740 9 1259 1244 93 23 11 chr3 88376226 88376400 -71223383 - B2_Mm2 SINE B2 -19 176 1 9 1259 893 158 56 43 chr3 88376400 88376424 -71223359 - L1_Mur2 LINE L1 -4138 1739 1713 9 1259 1334 77 55 0 chr3 88376424 88376605 -71223178 - B2_Mm2 SINE B2 -4 191 1 9 1259 893 158 56 43 chr3 88376605 88376745 -71223038 - L1_Mur2 LINE L1 -4165 1712 1578 9 1259 430 163 124 52 chr3 88376753 88376805 -71222978 + B3 SINE B2 27 82 -134 9 1259 2582 151 6 123 chr3 88376805 88377310 -71222473 + RLTR41 LTR ERV1 1 446 0 9 1259 430 163 124 52 chr3 88377310 88377354 -71222429 + B3 SINE B2 83 130 -86 9 1259 675 231 199 31 chr3 88377468 88377759 -71222024 + RMER13A LTR ERVK 85 424 -436 9 1259 747 0 0 0 chr3 88378124 88378207 -71221576 + (GTTTG)n Simple_repeat Simple_repeat 2 84 0 9 1259 834 134 21 50 chr3 88378208 88378349 -71221434 - B1_Mus2 SINE Alu -10 137 1 9 1259 228 35 0 0 chr3 88378362 88378391 -71221392 + (CAA)n Simple_repeat Simple_repeat 2 30 0 9 1259 904 83 223 6 chr3 88378394 88378551 -71221232 + B2_Mm1t SINE B2 2 192 -1 9 1259 198 0 0 0 chr3 88378640 88378662 -71221121 + (T)n Simple_repeat Simple_repeat 1 22 0 9 1259 1268 41 0 0 chr3 88378662 88378809 -71220974 - B1_Mm SINE Alu 0 147 1 9 1259 21 0 0 0 chr3 88378851 88378872 -71220911 + AT_rich Low_complexity Low_complexity 1 21 0 9 1259 536 268 21 5 chr3 88378881 88379033 -71220750 + B3A SINE B2 2 164 -31 9 1259 477 0 0 0 chr3 88379033 88379086 -71220697 + (TAAA)n Simple_repeat Simple_repeat 3 55 0 9 1259 421 302 77 16 chr3 88379086 88379115 -71220668 + B2_Mm2 SINE B2 165 194 -1 9 1259 237 266 0 138 chr3 88379152 88379224 -71220559 - RLTR11A2 LTR ERVK -307 220 157 9 1259 1575 53 0 5 chr3 88379224 88379415 -71220368 - B2_Mm1a SINE B2 -1 192 3 9 1259 237 266 0 138 chr3 88379415 88379451 -71220332 - RLTR11A2 LTR ERVK -371 156 127 9 1259 752 126 16 0 chr3 88379517 88379644 -71220139 + RLTR11B LTR ERVK 1 129 -324 9 1259 2053 169 47 12 chr3 88379648 88380073 -71219710 + RLTR11A2 LTR ERVK 10 449 -78 9 1259 442 94 0 0 chr3 88380075 88380139 -71219644 + B1_Mus1 SINE Alu 2 65 -83 9 1259 231 203 127 28 chr3 88381109 88381180 -71218603 + RLTR25B LTR ERVK 432 509 -519 9 1259 662 78 28 28 chr3 88381120 88381226 -71218557 + B1_Mus2 SINE Alu 42 147 0 9 1259 218 0 94 0 chr3 88381226 88381258 -71218525 + (CAAAA)n Simple_repeat Simple_repeat 1 35 0 9 1259 419 143 9 0 chr3 88381261 88381343 -71218440 - MYSERV6-int LTR ERVK -6212 2747 2676 9 1259 558 170 11 0 chr3 88381391 88381485 -71218298 + B1_Mur3 SINE Alu 36 130 -19 9 1259 3078 23 0 3 chr3 88381573 88381920 -71217863 - ORR1A0 LTR MaLR 0 346 1 9 1259 476 157 0 12 chr3 88382050 88382134 -71217649 + B3 SINE B2 128 210 -6 9 1259 542 211 117 0 chr3 88382175 88382303 -71217480 + B1_Mus1 SINE Alu 1 143 -5 9 1259 270 273 8 106 chr3 88382304 88382335 -71217448 + MT2B2 LTR ERVL 137 168 -416 9 1259 2113 129 55 23 chr3 88382335 88382732 -71217051 + RMER17C LTR ERVK 1 410 0 9 1259 358 234 0 49 chr3 88382732 88382813 -71216970 + PB1D9 SINE Alu 6 82 -38 9 1259 491 276 110 0 chr3 88383026 88383171 -71216612 - RSINE1 SINE B4 -4 161 1 9 1259 219 69 0 0 chr3 88384074 88384103 -71215680 + (TGAA)n Simple_repeat Simple_repeat 1 29 0 9 1259 709 157 61 54 chr3 88384320 88384468 -71215315 - B1_Mur4 SINE Alu -1 149 1 9 1259 1185 90 6 0 chr3 88384695 88384862 -71214921 - B2_Mm1a SINE B2 -24 169 2 9 1259 229 280 85 85 chr3 88385390 88385589 -71214194 + YREP_Mm Unknown Unknown 98 296 -1516 9 1259 837 181 0 7 chr3 88385459 88385604 -71214179 - B1_Mur4 SINE Alu 0 150 7 9 1259 1584 47 5 0 chr3 88385617 88385807 -71213976 - B2_Mm1t SINE B2 -1 192 2 9 1259 267 236 202 0 chr3 88385889 88385978 -71213805 - B3A SINE B2 -35 163 57 9 1259 986 47 0 0 chr3 88386028 88386156 -71213627 - B1_Mus1 SINE Alu -20 128 1 9 1259 569 285 14 85 chr3 88386250 88386461 -71213322 + B3A SINE B2 2 197 -1 9 1259 1260 47 0 0 chr3 88386461 88386609 -71213174 + B1_Mus1 SINE Alu 1 148 0 9 1259 337 243 143 19 chr3 88386648 88386753 -71213030 + PB1D9 SINE Alu 3 120 0 9 1259 224 184 0 0 chr3 88386756 88386794 -71212989 + B1_Mus1 SINE Alu 7 44 -104 9 1259 326 300 147 59 chr3 88386936 88387343 -71212440 - RLTR12B LTR ERVK -44 484 42 9 1259 409 154 14 1 chr3 88387378 88387454 -71212329 + B3 SINE B2 5 80 -115 9 1259 527 244 26 0 chr3 88387546 88387661 -71212122 - PB1D9 SINE Alu -2 118 1 9 1259 330 26 0 0 chr3 88387906 88387945 -71211838 + (TG)n Simple_repeat Simple_repeat 2 40 0 9 1259 7628 73 0 1 chr3 88388088 88389515 -71210268 - L1_Mus2 LINE L1 0 6566 5142 9 1259 215 121 0 0 chr3 88389574 88389607 -71210176 - B1_Mus1 SINE Alu -115 33 1 9 1259 560 266 0 81 chr3 88389618 88389790 -71209993 - ID_B1 SINE B4 0 224 67 9 1259 783 169 7 0 chr3 88390264 88390400 -71209383 - B1_Mus1 SINE Alu 0 148 12 9 1259 485 280 30 0 chr3 88390457 88390589 -71209194 - B3 SINE B2 0 216 81 9 1259 1160 55 0 0 chr3 88392483 88392628 -71207155 - B1_Mm SINE Alu -1 146 2 9 1259 1024 92 228 0 chr3 88392719 88392903 -71206880 + URR1A DNA MER1_type 1 226 0 9 1259 751 227 60 35 chr3 88392922 88393123 -71206660 + B3 SINE B2 2 207 -9 1 1259 1081 66 19 12 chr3 88393149 88393308 -71206475 - B1_Mus1 SINE Alu 0 311 10 1 1259 464 276 96 9 chr3 88393354 88393516 -71206267 + B3A SINE B2 1 174 -19 1 1259 1149 92 35 0 chr3 88393517 88393690 -71206093 + B2_Mm1t SINE B2 1 179 -14 1 1259 375 81 324 108 chr3 88393737 88393836 -71205947 + B2_Mm2 SINE B2 47 170 -25 1 1259 1144 68 0 0 chr3 88393836 88393982 -71205801 - B1_Mus1 SINE Alu -1 147 2 1 1259 375 81 324 108 chr3 88393982 88393993 -71205790 + B2_Mm2 SINE B2 171 181 -14 1 1259 637 188 70 0 chr3 88394061 88394189 -71205594 - B1_Mur3 SINE Alu -11 138 2 1 1259 270 0 0 0 chr3 88395222 88395252 -71204531 + (CA)n Simple_repeat Simple_repeat 2 31 0 1 1259 326 0 0 0 chr3 88395935 88395974 -71203809 + U2 snRNA snRNA 1 39 -149 1 1259 220 219 24 131 chr3 88396054 88396138 -71203645 - B1F SINE Alu -1 148 74 1 1259 205 256 0 0 chr3 88398596 88398639 -71201144 + CT-rich Low_complexity Low_complexity 1 43 0 1 1259 1231 111 21 0 chr3 88398703 88398892 -71200891 - B2_Mm2 SINE B2 0 195 3 1 1259 1288 74 10 31 chr3 88398892 88399087 -71200696 - B2_Mm1a SINE B2 -1 192 2 1 1259 767 201 373 7 chr3 88399331 88399626 -71200157 - MTD LTR MaLR -8 411 9 1 1259 240 217 0 12 chr3 88399652 88399736 -71200047 - RMER17C LTR ERVK -149 261 179 1 1259 265 266 50 12 chr3 88399749 88399829 -71199954 - RSINE1 SINE B4 -65 100 18 1 1259 1173 48 0 0 chr3 88399864 88400010 -71199773 + B1_Mm SINE Alu 2 147 0 1 1259 414 286 13 58 chr3 88400013 88400169 -71199614 - B1_Mur4 SINE Alu 0 150 2 1 1259 1089 68 0 7 chr3 88400180 88400191 -71199592 - B1_Mus1 SINE Alu 0 148 138 1 1259 204 67 0 0 chr3 88400191 88400221 -71199562 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 1 1259 1089 68 0 7 chr3 88400221 88400357 -71199426 - B1_Mus1 SINE Alu -11 137 2 1 1259 397 271 16 41 chr3 88400471 88400594 -71199189 + ID_B1 SINE B4 1 120 -104 1 1259 345 274 67 25 chr3 88400881 88401001 -71198782 + ID_B1 SINE B4 98 222 -2 1 1259 595 193 0 9 chr3 88401158 88401273 -71198510 - PB1D9 SINE Alu -1 119 6 1 1259 213 39 0 0 chr3 88401281 88401307 -71198476 + (TTTA)n Simple_repeat Simple_repeat 4 29 0 1 1259 925 231 5 5 chr3 88401307 88401503 -71198280 - B3 SINE B2 -16 200 5 1 1259 204 125 0 0 chr3 88402119 88402151 -71197632 + (T)n Simple_repeat Simple_repeat 1 32 0 1 1259 1143 68 0 0 chr3 88402151 88402298 -71197485 - B1_Mm SINE Alu 0 147 1 1 1259 381 259 214 17 chr3 88402300 88402473 -71197310 - MER58B DNA MER1_type -11 330 124 1 1259 252 0 0 0 chr3 88402569 88402597 -71197186 + (TG)n Simple_repeat Simple_repeat 2 29 0 1 1259 326 240 13 0 chr3 88402618 88402693 -71197090 - B4 SINE B4 -2 290 215 1 1259 210 37 0 0 chr3 88402702 88402729 -71197054 + (TTTTTG)n Simple_repeat Simple_repeat 3 29 0 1 1259 841 189 136 5 chr3 88402734 88402925 -71196858 - B3 SINE B2 0 216 1 1 1259 332 272 16 81 chr3 88402929 88403053 -71196730 - PB1D10 SINE Alu -1 116 1 1 1259 247 100 483 0 chr3 88403061 88403150 -71196633 - B2_Mm2 SINE B2 0 195 64 1 1259 1257 74 45 0 chr3 88403204 88403380 -71196403 - B2_Mm2 SINE B2 -11 184 1 1 1259 669 302 54 5 chr3 88403441 88403644 -71196139 + B3 SINE B2 4 216 0 1 1259 1072 71 0 0 chr3 88403647 88403788 -71195995 + B1_Mus2 SINE Alu 2 142 -5 1 1259 222 37 0 0 chr3 88403790 88403817 -71195966 + (GA)n Simple_repeat Simple_repeat 2 28 0 1 1259 349 280 136 0 chr3 88403821 88403946 -71195837 + RSINE1 SINE B4 7 148 -17 1 1259 428 324 27 14 chr3 88404020 88404167 -71195616 + RSINE1 SINE B4 1 149 -16 1 1259 333 0 0 0 chr3 88404168 88404205 -71195578 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 1259 261 83 0 0 chr3 88404331 88404367 -71195416 + (CAA)n Simple_repeat Simple_repeat 1 36 0 1 1259 212 159 0 43 chr3 88404367 88404384 -71195399 + (TAA)n Simple_repeat Simple_repeat 1 17 0 1 1259 2688 92 32 41 chr3 88404384 88404455 -71195328 + L1_Mus4 LINE L1 6200 6284 -352 1 1259 1356 83 5 20 chr3 88404455 88404651 -71195132 + B2_Mm1t SINE B2 1 193 0 1 1259 2688 92 32 41 chr3 88404651 88405019 -71194764 + L1_Mus4 LINE L1 6285 6635 -1 1 1259 207 0 0 0 chr3 88405019 88405042 -71194741 + (CTA)n Simple_repeat Simple_repeat 1 23 0 1 1259 212 159 0 43 chr3 88405042 88405069 -71194714 + (TAA)n Simple_repeat Simple_repeat 3 28 0 1 1259 754 196 173 0 chr3 88405077 88405250 -71194533 + B3 SINE B2 1 203 -13 1 1259 213 121 0 0 chr3 88405257 88405290 -71194493 + (T)n Simple_repeat Simple_repeat 1 33 0 1 1259 1072 89 0 0 chr3 88405290 88405436 -71194347 - B1_Mus2 SINE Alu 0 147 2 1 1259 586 188 0 18 chr3 88405459 88405573 -71194210 + B1_Mur2 SINE Alu 32 143 -6 1 1259 522 241 191 22 chr3 88405576 88405754 -71194029 + B3 SINE B2 1 208 -8 1 1259 239 0 0 31 chr3 88405754 88405786 -71193997 + (CAA)n Simple_repeat Simple_repeat 2 32 0 1 1259 864 151 22 34 chr3 88405786 88405944 -71193839 + B2_Mm2 SINE B2 1 155 -40 1 1259 198 0 0 0 chr3 88405944 88405966 -71193817 + (TAAA)n Simple_repeat Simple_repeat 4 25 0 1 1259 864 151 22 34 chr3 88405966 88405985 -71193798 + B2_Mm2 SINE B2 156 175 -20 1 1259 593 153 80 9 chr3 88405997 88406109 -71193674 + PB1D9 SINE Alu 1 120 0 1 1259 319 282 23 23 chr3 88406132 88406219 -71193564 + PB1D7 SINE Alu 26 112 -8 1 1259 293 293 0 0 chr3 88406227 88406302 -71193481 + ID4 SINE ID 5 79 -4 1 1259 330 226 23 45 chr3 88406649 88406737 -71193046 - B1_Mur2 SINE Alu 0 149 35 1 1259 592 194 97 0 chr3 88406861 88406985 -71192798 - B1_Mur3 SINE Alu -9 140 5 1 1259 1163 132 26 0 chr3 88407043 88407232 -71192551 - B2_Mm2 SINE B2 -1 194 1 1 1259 935 187 305 37 chr3 88407242 88407537 -71192246 - ORR1D1 LTR MaLR 0 374 1 1 1259 289 296 0 0 chr3 88408008 88408079 -71191704 + RSINE1 SINE B4 87 157 -8 1 1259 627 220 40 0 chr3 88408096 88408246 -71191537 - RSINE1 SINE B4 -8 157 2 1 1259 228 67 0 0 chr3 88408403 88408433 -71191350 + (TTTTTG)n Simple_repeat Simple_repeat 1 30 0 1 1259 408 253 40 6 chr3 88408438 88408571 -71191212 - B1_Mur2 SINE Alu -2 148 11 1 1259 264 214 35 133 chr3 88408481 88408594 -71191189 - MT2B LTR ERVL -344 257 156 1 1259 198 0 0 0 chr3 88408640 88408662 -71191121 + (CA)n Simple_repeat Simple_repeat 1 22 0 1 1259 383 273 83 0 chr3 88408780 88408901 -71190882 - B1F2 SINE Alu -8 141 11 1 1259 658 214 16 8 chr3 88409102 88409229 -71190554 - B1_Mur1 SINE Alu -21 128 1 1 1259 862 152 0 0 chr3 88409259 88409397 -71190386 + B2_Mm2 SINE B2 3 140 -55 1 1259 362 22 0 0 chr3 88409408 88409454 -71190329 + B1_Mus1 SINE Alu 6 51 -97 1 1259 224 275 0 0 chr3 88409454 88409534 -71190249 + A-rich Low_complexity Low_complexity 1 80 0 1 1259 250 325 46 38 chr3 88409534 88409665 -71190118 - B1F SINE Alu -13 136 5 1 1259 531 0 0 0 chr3 88409691 88409750 -71190033 + (TTTC)n Simple_repeat Simple_repeat 4 62 0 1 1259 1253 91 11 0 chr3 88409750 88409925 -71189858 - B2_Mm1a SINE B2 -15 178 2 1 1259 254 243 42 28 chr3 88410585 88410657 -71189126 - MIR3 SINE MIR -38 170 98 1 1259 273 156 0 0 chr3 88410787 88410832 -71188951 - ID_B1 SINE B4 0 224 180 1 1259 218 157 118 0 chr3 88410788 88410839 -71188944 - PB1D7 SINE Alu 0 120 64 1 1259 213 108 0 0 chr3 88411804 88411841 -71187942 + (CAG)n Simple_repeat Simple_repeat 1 37 0 1 1259 208 266 0 60 chr3 88412001 88412101 -71187682 + (TCTCTG)n Simple_repeat Simple_repeat 2 95 0 1 1259 1169 54 0 0 chr3 88412667 88412814 -71186969 - B1_Mus2 SINE Alu 0 147 1 1 1259 270 0 0 0 chr3 88413159 88413189 -71186594 + (TG)n Simple_repeat Simple_repeat 2 31 0 1 1259 239 240 94 57 chr3 88413211 88413317 -71186466 - B4A SINE B4 -181 111 2 1 1259 238 289 104 9 chr3 88413388 88413404 -71186379 - ID_B1 SINE B4 -3 221 96 1 1259 303 265 50 10 chr3 88413404 88413503 -71186280 - PB1D10 SINE Alu 0 117 15 1 1259 329 338 88 7 chr3 88413517 88413654 -71186129 - B1F2 SINE Alu -1 148 1 1 1259 198 0 0 0 chr3 88413805 88413827 -71185956 + (TC)n Simple_repeat Simple_repeat 1 22 0 1 1259 293 269 76 84 chr3 88413831 88413866 -71185917 - B4 SINE B4 0 224 135 1 1259 355 212 89 20 chr3 88413866 88413967 -71185816 - B1_Mm SINE Alu -30 117 10 1 1259 293 269 76 84 chr3 88413967 88413986 -71185797 - B4 SINE B4 0 134 81 1 1259 205 211 0 0 chr3 88413987 88414025 -71185758 + T-rich Low_complexity Low_complexity 1 38 0 1 1259 275 402 0 0 chr3 88414041 88414138 -71185645 - RSINE1 SINE B4 0 165 69 1 1259 279 0 0 0 chr3 88414308 88414339 -71185444 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1 1259 1083 76 0 0 chr3 88414339 88414484 -71185299 - B1_Mus1 SINE Alu -3 145 1 1 1259 290 306 131 10 chr3 88414544 88414643 -71185140 - PB1D10 SINE Alu -1 116 6 1 1259 935 265 5 5 chr3 88414727 88414943 -71184840 - ID_B1 SINE B4 -3 221 6 1 1259 786 221 0 0 chr3 88415137 88415286 -71184497 - B1_Mur4 SINE Alu 0 150 2 1 1259 231 212 0 0 chr3 88415289 88415369 -71184414 + T-rich Low_complexity Low_complexity 1 80 0 1 1259 1125 88 0 0 chr3 88415369 88415517 -71184266 - B1_Mus1 SINE Alu 0 148 1 1 1259 775 182 7 26 chr3 88415540 88415692 -71184091 - B1_Mur1 SINE Alu 0 149 1 1 1259 692 231 0 7 chr3 88415695 88415839 -71183944 - B1_Mus2 SINE Alu 0 147 5 1 1259 630 286 5 53 chr3 88415870 88416077 -71183706 - B3A SINE B2 0 198 2 1 1259 270 0 0 0 chr3 88416092 88416122 -71183661 + (TC)n Simple_repeat Simple_repeat 1 30 0 1 1259 909 186 70 0 chr3 88416310 88416509 -71183274 - B3 SINE B2 -3 213 1 1 1259 421 146 34 0 chr3 88416524 88416613 -71183170 + CT-rich Low_complexity Low_complexity 3 94 0 1 1259 1516 32 16 5 chr3 88416615 88416805 -71182978 - B2_Mm2 SINE B2 -3 192 1 1 1259 379 248 111 74 chr3 88416929 88417173 -71182610 - L1M2 LINE L1 -817 5326 5074 1 1259 263 226 0 0 chr3 88417222 88417275 -71182508 + B3A SINE B2 3 55 -143 1 1259 342 0 0 0 chr3 88417392 88417430 -71182353 + (CA)n Simple_repeat Simple_repeat 2 39 0 1 1259 503 238 107 0 chr3 88417499 88417621 -71182162 + RSINE1 SINE B4 11 145 -20 1 1259 324 0 0 0 chr3 88417623 88417659 -71182124 + (CA)n Simple_repeat Simple_repeat 1 36 0 1 1259 239 280 0 163 chr3 88417794 88417846 -71181937 + ID_B1 SINE B4 81 109 -115 1 1259 843 158 14 0 chr3 88417846 88417992 -71181791 + B1_Mur3 SINE Alu 1 148 -1 1 1259 340 185 15 0 chr3 88418009 88418074 -71181709 + ID_B1 SINE B4 149 214 -10 1 1259 491 242 39 24 chr3 88418092 88418219 -71181564 + RSINE1 SINE B4 2 130 -35 1 1259 387 133 48 0 chr3 88418690 88418771 -71181012 - B1_Mur3 SINE Alu -8 141 41 1 1259 419 185 35 133 chr3 88418937 88419080 -71180703 + RSINE1 SINE B4 2 130 -35 1 1259 493 208 19 83 chr3 88421174 88421331 -71178452 - B1F SINE Alu -1 148 2 1 1259 610 252 44 0 chr3 88421359 88421494 -71178289 - ID_B1 SINE B4 0 224 84 1 1259 679 171 7 13 chr3 88421508 88421662 -71178121 + CT-rich Low_complexity Low_complexity 4 156 0 1 1259 28 0 0 0 chr3 88422973 88423001 -71176782 + AT_rich Low_complexity Low_complexity 1 28 0 1 1259 191 36 36 0 chr3 88423958 88423986 -71175797 + (TTTC)n Simple_repeat Simple_repeat 2 30 0 1 1259 733 69 0 0 chr3 88423986 88424088 -71175695 - B1_Mus2 SINE Alu 0 147 46 1 1259 1390 63 15 20 chr3 88429480 88429675 -71170108 - B2_Mm2 SINE B2 -1 194 1 1 1259 309 237 0 26 chr3 88429755 88429833 -71169950 - ID_B1 SINE B4 -62 162 87 1 1259 493 212 9 9 chr3 88430119 88430233 -71169550 - PB1D10 SINE Alu -3 114 1 1 1259 231 36 0 0 chr3 88430879 88430907 -71168876 + (GA)n Simple_repeat Simple_repeat 2 29 0 1 1259 189 0 0 0 chr3 88430978 88430999 -71168784 + (CAAAAA)n Simple_repeat Simple_repeat 2 22 0 1 1259 450 226 0 19 chr3 88431314 88431418 -71168365 + PB1D7 SINE Alu 18 119 -1 1 1259 581 201 0 97 chr3 88431868 88431981 -71167802 - B1_Mus1 SINE Alu -9 139 41 1 1259 1316 68 20 35 chr3 88431981 88432179 -71167604 - B2_Mm2 SINE B2 0 195 1 1 1259 581 201 0 97 chr3 88432179 88432219 -71167564 - B1_Mus1 SINE Alu -108 40 1 1 1259 640 181 24 0 chr3 88432259 88432386 -71167397 - B1_Mur1 SINE Alu -8 141 12 1 1259 332 200 35 59 chr3 88432572 88432588 -71167195 - PB1D10 SINE Alu -3 114 32 1 1259 347 159 58 0 chr3 88432588 88432657 -71167126 - ID_B1 SINE B4 -39 185 113 1 1259 189 0 0 0 chr3 88432690 88432711 -71167072 + (TTG)n Simple_repeat Simple_repeat 2 22 0 1 1259 230 280 138 11 chr3 88432711 88432805 -71166978 - PB1D10 SINE Alu -10 107 2 1 1259 342 0 0 0 chr3 88433018 88433056 -71166727 + (CA)n Simple_repeat Simple_repeat 2 39 0 1 1259 240 35 0 0 chr3 88434529 88434558 -71165225 + (CCCCCA)n Simple_repeat Simple_repeat 1 29 0 1 1259 262 0 26 26 chr3 88437743 88437782 -71162001 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 1 1259 1167 43 0 0 chr3 88437785 88437926 -71161857 - B1_Mus1 SINE Alu -6 142 2 1 1259 453 248 25 8 chr3 88437945 88438063 -71161720 - PB1D7 SINE Alu 0 120 1 1 1259 393 261 54 0 chr3 88438620 88438731 -71161052 - RSINE1 SINE B4 -29 136 20 1 1259 533 194 96 7 chr3 88439169 88439304 -71160479 - B1_Mus2 SINE Alu 0 147 1 1 1259 859 218 50 35 chr3 88441129 88441329 -71158454 + B3 SINE B2 8 210 -6 1 1259 186 200 0 0 chr3 88441359 88441403 -71158380 + T-rich Low_complexity Low_complexity 17 60 0 1 1259 1577 42 0 0 chr3 88441403 88441594 -71158189 - B2_Mm1a SINE B2 -1 192 2 1 1259 186 200 0 0 chr3 88441594 88441609 -71158174 + T-rich Low_complexity Low_complexity 2 16 0 1 1259 300 300 0 43 chr3 88441611 88441705 -71158078 - PB1D9 SINE Alu -2 118 29 1 1259 216 0 0 0 chr3 88441740 88441764 -71158019 + (A)n Simple_repeat Simple_repeat 1 24 0 1 1259 625 116 223 0 chr3 88441886 88442007 -71157776 + B1_Mus1 SINE Alu 1 148 0 1 1259 673 142 22 163 chr3 88442295 88442522 -71157261 - B2_Mm2 SINE B2 0 195 1 1 1259 261 180 0 62 chr3 88442612 88442628 -71157155 + B1_Mm SINE Alu 86 99 -48 1 1259 1267 67 56 0 chr3 88442628 88442785 -71156998 + B2_Mm1t SINE B2 2 159 -34 1 1259 216 0 0 0 chr3 88442785 88442809 -71156974 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 1 1259 1267 67 56 0 chr3 88442809 88442831 -71156952 + B2_Mm1t SINE B2 160 190 -3 1 1259 266 153 0 3 chr3 88442831 88442879 -71156904 + B1_Mus2 SINE Alu 100 146 -1 1 1259 351 0 0 0 chr3 88442885 88442924 -71156859 + (CAA)n Simple_repeat Simple_repeat 1 39 0 1 1259 283 336 44 9 chr3 88442934 88443048 -71156735 + B1F SINE Alu 14 131 -18 1 1259 709 170 74 0 chr3 88443692 88443827 -71155956 + B1_Mur3 SINE Alu 4 148 -1 1 1259 215 316 26 0 chr3 88443854 88443930 -71155853 + ID SINE ID 4 81 -143 1 1259 709 254 43 32 chr3 88444389 88444576 -71155207 + B3 SINE B2 18 206 -10 1 1259 314 256 22 0 chr3 88444584 88444674 -71155109 + L1MC4a LINE L1 5836 5927 -1955 1 1259 414 0 0 0 chr3 88444688 88444734 -71155049 + (TG)n Simple_repeat Simple_repeat 2 47 0 1 1259 241 196 0 82 chr3 88444820 88444881 -71154902 + B3 SINE B2 155 210 -6 1 1259 886 145 7 33 chr3 88444889 88445039 -71154744 + B1_Mur3 SINE Alu 3 148 -1 1 1259 1117 60 134 29 chr3 88445045 88445216 -71154567 - B2_Mm2 SINE B2 -6 189 1 1 1259 25 65 0 0 chr3 88445221 88445267 -71154516 + AT_rich Low_complexity Low_complexity 1 46 0 1 1259 527 287 19 83 chr3 88445267 88445345 -71154438 + ID_B1 SINE B4 78 155 -69 1 1259 1138 176 227 10 chr3 88445345 88445649 -71154134 - ORR1D2 LTR MaLR 0 370 1 1 1259 527 287 19 83 chr3 88445649 88445726 -71154057 + ID_B1 SINE B4 156 223 -1 1 1259 770 203 218 11 chr3 88445887 88446066 -71153717 - B3 SINE B2 0 216 1 1 1259 745 265 102 5 chr3 88448253 88448450 -71151333 + B4 SINE B4 18 233 -59 1 1259 472 204 86 93 chr3 88448473 88448624 -71151159 - B1_Mur4 SINE Alu 0 150 1 1 1259 861 176 24 6 chr3 88448639 88448823 -71150960 + B3 SINE B2 1 195 0 1 1259 319 178 26 40 chr3 88449285 88449361 -71150422 - L1MEg LINE L1 -4127 1957 1883 1 1259 1131 55 170 0 chr3 88449372 88449537 -71150246 - B2_Mm2 SINE B2 -1 194 2 1 1259 321 26 0 0 chr3 88451756 88451794 -71147989 + (GA)n Simple_repeat Simple_repeat 2 39 0 1 1259 607 229 0 8 chr3 88452479 88452598 -71147185 - PB1D7 SINE Alu -1 119 2 1 1259 361 275 219 14 chr3 88453744 88453954 -71145829 - B4A SINE B4 -27 265 13 1 1259 307 294 53 40 chr3 88454002 88454154 -71145629 - RSINE1 SINE B4 -9 156 3 1 1259 1132 82 0 13 chr3 88454431 88454580 -71145203 + B1_Mus2 SINE Alu 1 147 0 1 1259 345 274 56 19 chr3 88454626 88454734 -71145049 + RSINE1 SINE B4 24 135 -30 1 1259 715 215 14 14 chr3 88454793 88454939 -71144844 + B1_Mus2 SINE Alu 1 146 -1 1 1259 238 286 0 0 chr3 88454974 88455037 -71144746 + (CATA)n Simple_repeat Simple_repeat 4 66 0 1 1259 359 314 123 8 chr3 88455070 88455192 -71144591 + ID_B1 SINE B4 80 215 -9 1 1259 524 264 0 37 chr3 88457612 88457746 -71142037 + RSINE1 SINE B4 2 130 -35 1 1259 378 0 0 0 chr3 88457752 88457794 -71141989 + (CA)n Simple_repeat Simple_repeat 1 42 0 1 1259 241 312 75 0 chr3 88457832 88457925 -71141858 + PB1 SINE Alu 7 106 -21 1 1259 264 209 0 162 chr3 88458106 88458186 -71141597 + B4 SINE B4 152 218 -74 1 1259 365 206 0 27 chr3 88458121 88458196 -71141587 + B1_Mur1 SINE Alu 77 149 0 1 1259 388 323 39 8 chr3 88458224 88458352 -71141431 + RSINE1 SINE B4 34 165 0 1 1259 515 262 164 0 chr3 88458381 88458564 -71141219 + B3 SINE B2 1 213 -3 1 1259 419 241 330 5 chr3 88459485 88459673 -71140110 - RMER21B LTR ERV1 -275 567 319 1 1259 3032 167 63 2 chr3 88460023 88460544 -71139239 - RMER4B LTR ERVK 0 585 33 1 1259 1259 35 0 0 chr3 88460568 88460713 -71139070 - B1_Mm SINE Alu -1 146 2 1 1259 1031 257 84 30 chr3 88460751 88461084 -71138699 - ORR1E LTR MaLR -8 351 1 1 1259 834 254 16 31 chr3 88461293 88461484 -71138299 + B3 SINE B2 1 188 -28 1 1259 936 158 20 0 chr3 88461542 88461688 -71138095 - B1_Mur4 SINE Alu -1 149 1 1 1259 841 150 0 114 chr3 88461701 88461867 -71137916 - B1_Mus1 SINE Alu -1 147 1 1 1259 730 216 130 13 chr3 88461867 88462044 -71137739 + B3 SINE B2 31 210 -6 1 1259 1191 82 0 0 chr3 88462049 88462196 -71137587 + B1_Mus1 SINE Alu 2 148 0 1 1259 243 0 0 0 chr3 88462203 88462230 -71137553 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 1259 634 238 27 20 chr3 88462233 88462379 -71137404 + B1_Mur1 SINE Alu 1 147 -2 1 1259 497 252 9 0 chr3 88462411 88462518 -71137265 - B3 SINE B2 0 216 109 1 1259 238 94 0 0 chr3 88462563 88462595 -71137188 - MTD LTR MaLR -8 411 380 1 1259 1933 217 88 24 chr3 88462595 88462869 -71136914 - RLTR20B1 LTR ERVK 0 578 251 1 1259 432 0 0 0 chr3 88462869 88462917 -71136866 + (TC)n Simple_repeat Simple_repeat 1 48 0 1 1259 1933 214 85 17 chr3 88462917 88463157 -71136626 - RLTR20B1 LTR ERVK -313 250 2 1 1259 736 184 86 0 chr3 88463162 88463336 -71136447 - MYSERV16_I-int LTR ERVK -5 2321 2133 1 1259 1728 262 93 60 chr3 88463336 88463849 -71135934 + RLTR26 LTR ERVK 1 539 -103 1 1259 195 42 0 0 chr3 88463849 88463873 -71135910 + (CAG)n Simple_repeat Simple_repeat 1 24 0 1 1259 1728 262 93 60 chr3 88463873 88463980 -71135803 + RLTR26 LTR ERVK 540 642 0 1 1259 261 139 0 0 chr3 88464192 88464235 -71135548 + (A)n Simple_repeat Simple_repeat 1 43 0 1 1259 1548 135 94 4 chr3 88464237 88464504 -71135279 + MYSERV16_I-int LTR ERVK 352 642 -1684 1 1259 4365 156 29 64 chr3 88464504 88464591 -71135192 + MYSERV16_I-int LTR ERVK 1380 1461 -865 1 1259 940 97 19 70 chr3 88464591 88464747 -71135036 + B1_Mur4 SINE Alu 2 149 -1 1 1259 4365 156 29 64 chr3 88464747 88465241 -71134542 + MYSERV16_I-int LTR ERVK 1462 1944 -382 1 1259 196 28 26 53 chr3 88465241 88465279 -71134504 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 1 1259 1160 58 0 0 chr3 88465279 88465417 -71134366 - B1_Mus1 SINE Alu -9 139 2 1 1259 4365 156 29 64 chr3 88465417 88465786 -71133997 + MYSERV16_I-int LTR ERVK 1945 2298 -28 1 1259 613 142 165 8 chr3 88465791 88465897 -71133886 + RLTR20C LTR ERVK 2 126 -408 1 1259 1090 94 0 26 chr3 88465897 88466050 -71133733 + B2_Mm2 SINE B2 2 150 -45 1 1259 229 125 18 18 chr3 88466071 88466128 -71133655 + (TA)n Simple_repeat Simple_repeat 1 57 0 1 1259 765 215 19 84 chr3 88466152 88466365 -71133418 + RLTR20C LTR ERVK 110 308 -226 1 1259 465 19 0 0 chr3 88466397 88466451 -71133332 + (TG)n Simple_repeat Simple_repeat 2 55 0 1 1259 425 171 60 0 chr3 88466451 88466535 -71133248 + RLTR20C LTR ERVK 461 566 -12 1 1259 538 224 67 109 chr3 88466643 88466808 -71132975 + B3A SINE B2 40 197 -1 1 1259 229 283 56 9 chr3 88466838 88466913 -71132870 + B1F1 SINE Alu 39 111 -6 1 1259 1217 101 78 0 chr3 88466928 88467107 -71132676 - B2_Mm2 SINE B2 -1 194 2 1 1259 23 0 0 0 chr3 88467107 88467130 -71132653 + AT_rich Low_complexity Low_complexity 1 23 0 1 1259 397 232 0 35 chr3 88467140 88467225 -71132558 - B1_Mus1 SINE Alu -64 84 3 1 1259 526 256 10 1 chr3 88467232 88467367 -71132416 - B1_Mur1 SINE Alu -1 148 8 1 1259 935 236 15 20 chr3 88467425 88467596 -71132187 + B3 SINE B2 8 180 -36 1 1259 198 0 51 51 chr3 88467596 88467635 -71132148 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 1 1259 1157 52 0 0 chr3 88467635 88467771 -71132012 - B1_Mus2 SINE Alu -9 138 3 1 1259 935 236 15 20 chr3 88467771 88467797 -71131986 + B3 SINE B2 181 204 -12 1 1259 784 234 39 15 chr3 88467817 88468021 -71131762 + ID_B1 SINE B4 4 212 -12 1 1259 801 246 43 5 chr3 88468305 88468493 -71131290 + B3 SINE B2 17 211 -5 1 1259 1227 54 0 20 chr3 88468502 88468653 -71131130 - B1_Mus1 SINE Alu 0 148 1 1 1259 25 0 0 0 chr3 88468656 88468681 -71131102 + AT_rich Low_complexity Low_complexity 1 25 0 1 1259 534 194 37 37 chr3 88468711 88468818 -71130965 - B3 SINE B2 -109 107 1 1 1259 5054 96 50 102 chr3 88468838 88469005 -71130778 - RMER17A2 LTR ERVK -1 905 749 1 1259 186 43 0 0 chr3 88469005 88469028 -71130755 + (TGGGGG)n Simple_repeat Simple_repeat 5 27 0 1 1259 5054 96 50 102 chr3 88469028 88469813 -71129970 - RMER17A2 LTR ERVK -158 748 3 1 1259 719 185 6 93 chr3 88469834 88469949 -71129834 - B1_Mus2 SINE Alu 0 147 42 1 1259 1276 34 0 0 chr3 88469949 88470096 -71129687 - B1_Mus1 SINE Alu 0 148 2 1 1259 719 185 6 93 chr3 88470096 88470141 -71129642 - B1_Mus2 SINE Alu -106 41 1 1 1259 310 250 65 0 chr3 88470169 88470298 -71129485 + L1M5 LINE L1 5373 5516 -726 1 1259 290 167 0 0 chr3 88470282 88470330 -71129453 + Lx5 LINE L1 6531 6578 -472 1 1259 3012 24 0 0 chr3 88470332 88470669 -71129114 + IAPLTR1a_Mm LTR ERVK 1 337 0 1 157 56729 20 15 6 chr3 88470679 88477071 -71122712 + IAPEz-int LTR ERVK 34 6481 0 1 1260 3012 24 0 0 chr3 88477071 88477408 -71122375 + IAPLTR1a_Mm LTR ERVK 1 337 0 1 1260 1833 267 23 19 chr3 88477409 88477886 -71121897 + Lx6 LINE L1 6955 7433 -27 1 1260 268 127 0 45 chr3 88477888 88477954 -71121829 + (TAAA)n Simple_repeat Simple_repeat 2 64 0 1 1260 721 215 7 0 chr3 88478073 88478208 -71121575 - B1_Mus2 SINE Alu 0 147 12 1 1260 1151 68 0 20 chr3 88478323 88478461 -71121322 + B1_Mus1 SINE Alu 1 138 -10 1 1260 203 0 37 0 chr3 88478461 88478488 -71121295 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 1 1260 1151 68 0 20 chr3 88478488 88478500 -71121283 + B1_Mus1 SINE Alu 139 148 0 1 1260 456 324 18 0 chr3 88478513 88478624 -71121159 + PB1D7 SINE Alu 1 113 -7 1 1260 373 264 0 109 chr3 88478628 88478747 -71121036 + L1M5 LINE L1 5705 5810 -369 1 1260 467 247 69 40 chr3 88478910 88478939 -71120844 + ID_B1 SINE B4 45 209 -15 1 1260 821 128 62 21 chr3 88478939 88479070 -71120713 + B1_Mur4 SINE Alu 1 133 -17 1 1260 327 65 0 0 chr3 88479070 88479116 -71120667 + (CA)n Simple_repeat Simple_repeat 1 46 0 1 1260 467 247 69 40 chr3 88479116 88479128 -71120655 + ID_B1 SINE B4 210 221 -3 1 1260 362 260 104 38 chr3 88479272 88479419 -71120364 - PB1D7 SINE Alu -1 148 6 1 1260 233 309 36 0 chr3 88479345 88479429 -71120354 - B4A SINE B4 -126 166 80 1 1260 303 85 0 0 chr3 88479771 88479818 -71119965 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 1 1260 1273 97 6 6 chr3 88479819 88479995 -71119788 - B2_Mm2 SINE B2 -18 177 2 1 1260 2704 134 11 38 chr3 88480001 88480473 -71119310 - RMER6B LTR ERVK -2 459 1 1 1260 5913 125 37 20 chr3 88480476 88481234 -71118549 - MYSERV6-int LTR ERVK -1195 7764 7001 1 1260 270 0 0 0 chr3 88481234 88481264 -71118519 + (TTTG)n Simple_repeat Simple_repeat 3 32 0 1 1260 5913 125 37 20 chr3 88481264 88481457 -71118326 - MYSERV6-int LTR ERVK -1959 7000 6798 1 1260 3818 128 136 164 chr3 88481629 88482104 -71117679 - MYSERV6-int LTR ERVK -2160 6799 6257 1 1260 230 276 35 0 chr3 88482104 88482162 -71117621 - B4 SINE B4 -147 145 86 1 1260 3818 128 136 164 chr3 88482162 88482258 -71117525 - MYSERV6-int LTR ERVK -2703 6256 6148 1 1260 185 217 97 32 chr3 88482258 88482320 -71117463 + L4 LINE RTE 1402 1467 -562 1 1260 3818 128 136 164 chr3 88482320 88482394 -71117389 - MYSERV6-int LTR ERVK -2160 6147 6060 1 1260 1144 62 7 0 chr3 88482394 88482540 -71117243 - B1_Mus2 SINE Alu 0 147 1 1 1260 3818 128 136 164 chr3 88482540 88482943 -71116840 - MYSERV6-int LTR ERVK -2900 6059 5664 1 1260 1177 69 0 0 chr3 88482943 88483087 -71116696 - B1_Mm SINE Alu -1 146 3 1 1260 1323 91 32 0 chr3 88483125 88483312 -71116471 - B2_Mm1t SINE B2 0 193 1 1 1260 2216 99 19 3 chr3 88483312 88483635 -71116148 - MYSERV6-int LTR ERVK -7544 1415 1088 1 1260 315 0 0 0 chr3 88483635 88483670 -71116113 + (TTCTC)n Simple_repeat Simple_repeat 1 35 0 1 1260 522 48 0 56 chr3 88483673 88483762 -71116021 + (TTTC)n Simple_repeat Simple_repeat 3 86 0 1 1260 1039 105 28 0 chr3 88483762 88483905 -71115878 - B1_Mus1 SINE Alu 0 148 2 1 1260 5925 139 40 53 chr3 88483906 88484117 -71115666 - MYSERV6-int LTR ERVK -7859 1100 909 1 1260 486 167 9 0 chr3 88484117 88484225 -71115558 + L1_Mus4 LINE L1 6525 6633 -3 1 1260 5925 139 40 53 chr3 88484225 88485124 -71114659 - MYSERV6-int LTR ERVK -8051 908 4 1 1260 2452 143 27 65 chr3 88485129 88485180 -71114603 - RMER6B LTR ERVK -2 459 420 1 1260 1433 68 26 0 chr3 88485180 88485370 -71114413 + B2_Mm2 SINE B2 1 195 0 1 1260 2452 143 27 65 chr3 88485370 88485795 -71113988 - RMER6B LTR ERVK -42 419 1 1 1260 1023 68 53 0 chr3 88485821 88485953 -71113830 + B1_Mm SINE Alu 1 139 -8 1 1260 207 0 0 0 chr3 88485953 88485976 -71113807 + (CAA)n Simple_repeat Simple_repeat 2 24 0 1 1260 610 198 150 193 chr3 88486182 88486304 -71113479 - Lx9 LINE L1 -370 7274 7101 1 1260 1561 41 0 20 chr3 88486304 88486501 -71113282 - B2_Mm1a SINE B2 0 193 1 1 1260 610 198 150 193 chr3 88486501 88486560 -71113223 - Lx9 LINE L1 -544 7100 7062 1 1260 1526 37 21 21 chr3 88486560 88486752 -71113031 - B2_Mm1a SINE B2 0 193 2 1 1260 610 198 150 193 chr3 88486752 88486821 -71112962 - Lx9 LINE L1 -583 7061 7004 1 1260 1194 55 7 0 chr3 88486821 88486966 -71112817 + B1_Mus2 SINE Alu 2 147 0 1 1260 610 198 150 193 chr3 88486966 88487017 -71112766 - Lx9 LINE L1 -641 7003 6994 1 1260 1622 52 0 0 chr3 88487017 88487210 -71112573 + B2_Mm1t SINE B2 1 193 0 1 1260 610 198 150 193 chr3 88487210 88487299 -71112484 - Lx9 LINE L1 -651 6993 6899 1 1260 2252 197 105 21 chr3 88487301 88487999 -71111784 + RMER6A LTR ERVK 1 756 0 1 1260 359 227 31 0 chr3 88488049 88488177 -71111606 + GA-rich Low_complexity Low_complexity 2 133 0 1 1260 249 302 0 60 chr3 88488349 88488416 -71111367 + MER66C LTR ERV1 453 515 -40 1 1260 1674 26 5 0 chr3 88488541 88488732 -71111051 - B2_Mm1a SINE B2 -1 192 1 1 1260 310 127 146 112 chr3 88490665 88490773 -71109010 - PB1D9 SINE Alu 0 120 7 1 1260 337 279 163 0 chr3 88490813 88490942 -71108841 - B1_Mur4 SINE Alu 0 150 1 1 1260 252 299 211 50 chr3 88491252 88491470 -71108313 - B4 SINE B4 -11 281 29 1 1260 22 0 0 0 chr3 88491478 88491500 -71108283 + AT_rich Low_complexity Low_complexity 1 22 0 1 1260 404 200 0 0 chr3 88491507 88491572 -71108211 + B1_Mus1 SINE Alu 1 65 -83 1 1260 1247 64 128 0 chr3 88491825 88491997 -71107786 + B2_Mm2 SINE B2 1 194 -1 1 1260 337 165 126 58 chr3 88492197 88492300 -71107483 - B1_Mur2 SINE Alu 0 149 40 1 1260 650 226 167 6 chr3 88492391 88492547 -71107236 - B3 SINE B2 -2 214 34 1 1260 578 203 67 8 chr3 88492566 88492685 -71107098 - B1_Mm SINE Alu -21 126 1 1 1260 24 0 0 0 chr3 88492709 88492733 -71107050 + AT_rich Low_complexity Low_complexity 1 24 0 1 1260 1121 71 0 0 chr3 88493817 88493957 -71105826 - B1_Mus2 SINE Alu -6 141 2 1 1260 291 264 27 29 chr3 88493961 88494057 -71105726 + B4A SINE B4 172 269 -23 1 1260 523 292 138 17 chr3 88494057 88494231 -71105552 + B3 SINE B2 9 203 -13 1 1260 364 212 122 24 chr3 88494383 88494465 -71105318 + B1_Mur1 SINE Alu 42 131 -18 1 1260 1066 68 0 0 chr3 88494501 88494633 -71105150 + B1_Mm SINE Alu 1 132 -15 1 1260 225 261 45 30 chr3 88494665 88494732 -71105051 - ID4_ SINE ID -14 69 2 1 1260 296 278 102 10 chr3 88494845 88494943 -71104840 - ID_B1 SINE B4 -8 216 110 1 1260 440 295 82 60 chr3 88494963 88495147 -71104636 - B4A SINE B4 -1 291 104 1 1260 1437 79 21 0 chr3 88495255 88495445 -71104338 - B2_Mm2 SINE B2 0 195 2 1 1260 361 0 41 0 chr3 88495543 88495592 -71104191 + (TTTTTG)n Simple_repeat Simple_repeat 4 54 0 1 1260 1122 62 0 14 chr3 88495592 88495740 -71104043 - B1_Mus2 SINE Alu 0 147 2 1 1260 378 247 0 53 chr3 88495743 88495837 -71103946 - B4A SINE B4 -199 93 5 1 1260 1308 78 50 6 chr3 88495839 88496020 -71103763 - B2_Mm2 SINE B2 -6 189 1 1 1260 355 294 24 76 chr3 88496038 88496085 -71103698 - PB1D7 SINE Alu -3 146 105 1 1260 1689 31 0 0 chr3 88496085 88496278 -71103505 - B2_Mm1a SINE B2 0 193 1 1 1260 355 230 53 144 chr3 88496278 88496358 -71103425 - PB1D7 SINE Alu -11 109 33 1 1260 234 0 71 24 chr3 88496358 88496400 -71103383 + (TTTG)n Simple_repeat Simple_repeat 2 45 0 1 1260 1187 62 0 0 chr3 88496406 88496550 -71103233 - B1_Mus1 SINE Alu -4 144 1 1 1260 355 230 53 144 chr3 88496550 88496582 -71103201 - PB1D7 SINE Alu -88 32 1 1 1260 499 250 28 9 chr3 88496760 88496869 -71102914 - B1_Mur2 SINE Alu -38 111 1 1 1260 295 297 92 158 chr3 88496869 88496966 -71102817 - B4A SINE B4 -206 86 2 1 1260 225 0 0 0 chr3 88497602 88497627 -71102156 + (TCTA)n Simple_repeat Simple_repeat 2 26 0 1 1260 475 297 156 28 chr3 88498235 88498415 -71101368 - ID_B1 SINE B4 -21 203 1 1 1260 415 120 220 0 chr3 88498478 88498581 -71101202 + B1_Mus1 SINE Alu 9 132 -17 1 1260 233 351 76 8 chr3 88498569 88498701 -71101082 - ID_B1 SINE B4 -13 211 71 1 1260 591 244 151 12 chr3 88498783 88498949 -71100834 - MTD LTR MaLR -33 386 198 1 1260 24 0 0 0 chr3 88498978 88499002 -71100781 + AT_rich Low_complexity Low_complexity 1 24 0 1 1260 1583 21 32 0 chr3 88499270 88499456 -71100327 - B2_Mm1a SINE B2 0 193 2 1 1260 507 229 45 76 chr3 88499527 88499604 -71100179 - B1_Mur2 SINE Alu -15 134 67 1 1260 1241 117 11 0 chr3 88499604 88499792 -71099991 + B2_Mm1t SINE B2 2 191 -2 1 1260 507 229 45 76 chr3 88499792 88499846 -71099937 - B1_Mur2 SINE Alu -83 66 7 1 1260 363 326 0 11 chr3 88499907 88500000 -71099783 - MTD LTR MaLR -287 132 41 1 1260 1100 55 14 14 chr3 88500024 88500171 -71099612 + B1_Mus1 SINE Alu 2 148 0 1 1260 296 288 32 56 chr3 88500810 88500866 -71098917 + ID_B1 SINE B4 102 158 -66 2 1260 2231 156 56 20 chr3 88500866 88501316 -71098467 - RMER4A LTR ERVK 0 466 1 3 1260 296 288 32 56 chr3 88501316 88501384 -71098399 + ID_B1 SINE B4 159 223 -1 2 1260 538 254 135 21 chr3 88501440 88501633 -71098150 + B3 SINE B2 1 215 -1 4 1260 486 178 148 0 chr3 88501881 88501982 -71097801 - PB1D9 SINE Alu -4 116 1 5 1260 565 234 24 0 chr3 88502000 88502124 -71097659 - ID_B1 SINE B4 -7 217 91 6 1260 737 266 19 15 chr3 88502154 88502360 -71097423 - B3 SINE B2 -5 211 5 7 1260 539 172 58 66 chr3 88502488 88502625 -71097158 + B1_Mur2 SINE Alu 13 148 -1 8 1260 1003 104 0 0 chr3 88502944 88503079 -71096704 + B1_Mus1 SINE Alu 2 136 -12 9 1260 240 35 0 0 chr3 88503080 88503109 -71096674 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1 1260 523 189 27 0 chr3 88503200 88503311 -71096472 + MTC LTR MaLR 6 119 -302 1 1260 204 40 0 0 chr3 88503350 88503375 -71096408 + (TCCCC)n Simple_repeat Simple_repeat 2 26 0 1 1260 620 244 206 25 chr3 88503376 88503696 -71096087 - Lx4B LINE L1 -113 6945 6568 1 1260 243 254 34 0 chr3 88504921 88504980 -71094803 + (TATATG)n Simple_repeat Simple_repeat 3 63 0 1 1260 469 292 101 0 chr3 88504980 88505148 -71094635 - B3 SINE B2 -30 186 2 1 1260 267 330 41 99 chr3 88505175 88505296 -71094487 - RSINE1 SINE B4 -10 155 42 1 1260 250 299 0 0 chr3 88505366 88505433 -71094350 - ID_B1 SINE B4 -53 171 105 1 1260 233 229 42 0 chr3 88505562 88505610 -71094173 + PB1D9 SINE Alu 3 52 -68 1 1260 220 152 0 80 chr3 88505586 88505636 -71094147 + B1_Mur2 SINE Alu 97 142 -7 1 1260 24 0 0 0 chr3 88505636 88505660 -71094123 + AT_rich Low_complexity Low_complexity 1 24 0 2 1260 370 321 61 8 chr3 88505662 88505794 -71093989 + B4 SINE B4 84 222 -70 2 1260 404 228 17 50 chr3 88505841 88505961 -71093822 + B3A SINE B2 34 149 -49 2 1260 416 234 8 105 chr3 88505995 88506119 -71093664 - B1_Mur3 SINE Alu -26 123 12 2 1260 509 247 93 41 chr3 88506147 88506341 -71093442 + RLTR18 LTR ERVK 42 248 -264 2 1260 28 61 0 0 chr3 88506693 88506742 -71093041 + AT_rich Low_complexity Low_complexity 1 49 0 2 1260 867 158 0 0 chr3 88507203 88507336 -71092447 - B1_Mus1 SINE Alu -13 135 3 2 1260 1068 91 127 0 chr3 88507680 88507845 -71091938 + B2_Mm2 SINE B2 2 187 -8 2 1260 805 199 33 89 chr3 88507923 88508011 -71091772 + RLTR18-int LTR ERVK 4114 4201 -1160 2 1260 776 175 28 0 chr3 88508011 88508154 -71091629 + B1_Mur4 SINE Alu 1 147 -3 2 1260 805 199 33 89 chr3 88508154 88508335 -71091448 + RLTR18-int LTR ERVK 4202 4368 -993 2 1260 920 276 60 51 chr3 88508390 88508911 -71090872 + RLTR18 LTR ERVK 84 528 -88 2 1260 528 173 125 0 chr3 88508920 88509024 -71090759 + RLTR18-int LTR ERVK 4375 4491 -870 3 1260 252 0 0 0 chr3 88509105 88509133 -71090650 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 3 1260 606 208 0 39 chr3 88509158 88509173 -71090610 + ID_B1 SINE B4 76 222 0 3 1260 1030 58 0 0 chr3 88509173 88509311 -71090472 + B1_Mus1 SINE Alu 11 148 0 3 1260 182 0 107 0 chr3 88509316 88509344 -71090439 + (CAAAAA)n Simple_repeat Simple_repeat 2 32 0 3 1260 451 149 0 39 chr3 88509934 88510011 -71089772 + RLTR18-int LTR ERVK 4803 4876 -485 3 1260 548 174 165 0 chr3 88510265 88510386 -71089397 + B1_Mus1 SINE Alu 2 142 -6 3 1260 333 0 0 0 chr3 88510387 88510424 -71089359 + (CAAAA)n Simple_repeat Simple_repeat 4 40 0 3 1260 413 275 82 125 chr3 88511236 88511539 -71088244 + B4A SINE B4 3 292 0 3 1260 319 167 336 73 chr3 88511563 88511673 -71088110 - B2_Mm2 SINE B2 -7 186 47 3 1260 988 123 97 12 chr3 88511691 88511856 -71087927 - B2_Mm1t SINE B2 -14 179 1 3 1260 667 227 56 7 chr3 88511893 88512035 -71087748 - B1_Mur1 SINE Alu 0 149 1 4 1260 583 262 94 5 chr3 88512068 88512260 -71087523 - B3 SINE B2 -7 209 1 4 1260 208 214 0 0 chr3 88512761 88512803 -71086980 + (CCCCAG)n Simple_repeat Simple_repeat 1 42 0 4 1260 374 264 207 0 chr3 88514026 88514147 -71085636 + ID_B1 SINE B4 79 224 0 4 1260 705 260 73 0 chr3 88514165 88514357 -71085426 + B3 SINE B2 6 211 -5 4 1260 23 0 0 0 chr3 88514891 88514914 -71084869 + AT_rich Low_complexity Low_complexity 1 23 0 4 1260 228 200 0 0 chr3 88515296 88515346 -71084437 + T-rich Low_complexity Low_complexity 1 50 0 4 1260 385 256 73 16 chr3 88516890 88517013 -71082770 - B3 SINE B2 -86 130 1 4 1260 1159 68 0 7 chr3 88517294 88517441 -71082342 - B1_Mus2 SINE Alu 0 147 2 4 1260 305 338 44 15 chr3 88517483 88517618 -71082165 - RSINE1 SINE B4 -21 144 6 4 1260 326 274 58 25 chr3 88517592 88517712 -71082071 - B1_Mur1 SINE Alu -24 125 2 5 1260 285 301 14 0 chr3 88517790 88517863 -71081920 - ID4_ SINE ID -1 82 9 5 1260 451 241 84 42 chr3 88517877 88518020 -71081763 - B1F2 SINE Alu 0 149 1 5 1260 1120 102 0 23 chr3 88518041 88518212 -71081571 - B2_Mm2 SINE B2 -28 167 1 5 1260 377 149 95 0 chr3 88518361 88518435 -71081348 - ORR1C2 LTR MaLR -2 382 302 5 1260 1537 145 58 36 chr3 88518435 88518765 -71081018 - RMER4A LTR ERVK 0 466 130 5 1260 384 143 0 0 chr3 88518756 88518819 -71080964 + B2_Mm2 SINE B2 47 109 -86 5 1260 251 61 176 39 chr3 88518823 88518874 -71080909 - RMER4A LTR ERVK -343 123 66 5 1260 270 256 61 0 chr3 88518931 88519013 -71080770 + PB1D9 SINE Alu 28 114 -6 5 1260 364 234 68 129 chr3 88519287 88519434 -71080349 - B1_Mur1 SINE Alu -1 148 11 5 1260 624 263 74 40 chr3 88519453 88519612 -71080171 - B3 SINE B2 -6 210 43 5 1260 1609 52 0 0 chr3 88519612 88519805 -71079978 - B2_Mm1a SINE B2 0 193 1 6 1260 624 263 74 40 chr3 88519805 88519847 -71079936 - B3 SINE B2 -174 42 2 5 1260 261 243 126 36 chr3 88519850 88519961 -71079822 - ID_B1 SINE B4 -8 216 96 6 1260 24 0 0 0 chr3 88519988 88520012 -71079771 + AT_rich Low_complexity Low_complexity 1 24 0 6 1260 1519 59 5 0 chr3 88520021 88520208 -71079575 + B2_Mm1a SINE B2 2 189 -4 6 1260 1251 86 34 0 chr3 88520453 88520628 -71079155 + B2_Mm1a SINE B2 3 183 -10 6 1260 290 237 158 0 chr3 88522251 88522327 -71077456 - B1F SINE Alu -61 88 1 6 1260 387 257 93 29 chr3 88522470 88522610 -71077173 + B1F2 SINE Alu 1 149 0 6 1260 776 34 234 40 chr3 88522695 88522819 -71076964 - B1_Mus1 SINE Alu 0 148 1 6 1260 234 275 43 0 chr3 88522863 88522932 -71076851 - ID4 SINE ID -10 73 2 6 1260 375 286 30 130 chr3 88523842 88524011 -71075772 + RSINE1 SINE B4 14 165 0 6 1260 619 267 29 0 chr3 88524351 88524523 -71075260 - B3 SINE B2 0 216 40 7 1260 1039 23 8 0 chr3 88524750 88524883 -71074900 + B1_Mus2 SINE Alu 14 147 0 7 1260 304 308 72 58 chr3 88525002 88525140 -71074643 + RSINE1 SINE B4 2 141 -24 7 1260 392 333 16 8 chr3 88525140 88525267 -71074516 + RSINE1 SINE B4 38 165 0 7 1260 858 184 0 20 chr3 88525326 88525476 -71074307 - B1_Mur3 SINE Alu 0 149 3 7 1260 1277 73 61 11 chr3 88525486 88525667 -71074116 - B2_Mm2 SINE B2 -5 190 1 7 1260 238 333 44 0 chr3 88525719 88525731 -71074052 - PB1D10 SINE Alu -12 105 12 7 1260 272 320 13 0 chr3 88525731 88525809 -71073974 - ID_B1 SINE B4 -53 171 93 7 1260 529 130 54 0 chr3 88526183 88526275 -71073508 + B1_Mur1 SINE Alu 53 149 0 7 1260 970 73 0 42 chr3 88526343 88526486 -71073297 + B1_Mm SINE Alu 11 147 0 7 1260 3266 6 0 0 chr3 88526487 88526845 -71072938 + L1Md_A LINE L1 6225 6582 0 8 1260 423 0 0 0 chr3 88526864 88526911 -71072872 + (TA)n Simple_repeat Simple_repeat 2 48 0 8 1260 686 242 102 5 chr3 88527037 88527224 -71072559 + B3 SINE B2 8 212 -4 8 1260 832 220 66 53 chr3 88527898 88528310 -71071473 + ORR1C2 LTR MaLR 1 377 -17 8 1260 252 0 0 0 chr3 88528323 88528351 -71071432 + (CCTG)n Simple_repeat Simple_repeat 4 31 0 8 1260 207 235 0 0 chr3 88528351 88528402 -71071381 + CT-rich Low_complexity Low_complexity 6 56 0 8 1260 868 167 0 11 chr3 88528402 88528437 -71071346 + polypyrimidine Low_complexity Low_complexity 147 180 0 8 1260 1113 74 0 26 chr3 88528437 88528589 -71071194 - B1_Mus1 SINE Alu 0 148 1 8 1260 868 167 0 11 chr3 88528589 88528735 -71071048 + CT-rich Low_complexity Low_complexity 2 146 0 8 1260 401 333 0 0 chr3 88528735 88528855 -71070928 - B1F2 SINE Alu -1 148 29 8 1260 408 314 18 42 chr3 88528998 88529164 -71070619 + RSINE1 SINE B4 2 163 -2 9 1260 975 62 85 0 chr3 88529179 88529309 -71070474 + B1_Mus2 SINE Alu 1 141 -6 9 1260 315 0 0 0 chr3 88529314 88529349 -71070434 + (TAA)n Simple_repeat Simple_repeat 2 36 0 9 1260 1077 82 14 0 chr3 88529727 88529873 -71069910 - B1_Mur4 SINE Alu -1 149 2 9 1260 325 221 169 0 chr3 88530588 88530665 -71069118 + PB1D10 SINE Alu 12 101 -16 9 1260 408 221 0 7 chr3 88530762 88530850 -71068933 + ID4_ SINE ID 9 92 -60 9 1260 1206 48 7 0 chr3 88530850 88530996 -71068787 + B1_Mus2 SINE Alu 1 147 0 9 1260 307 265 0 47 chr3 88530996 88531014 -71068769 + BC1_Mm scRNA scRNA 93 110 -42 9 1260 23 0 0 0 chr3 88531227 88531250 -71068533 + AT_rich Low_complexity Low_complexity 1 23 0 9 1260 540 233 183 32 chr3 88531255 88531441 -71068342 + B3 SINE B2 2 215 -1 9 1260 520 207 33 0 chr3 88531536 88531657 -71068126 - B1_Mur1 SINE Alu -13 136 12 9 1260 504 48 0 0 chr3 88531926 88531989 -71067794 + (TTTC)n Simple_repeat Simple_repeat 3 65 0 1 1260 1513 45 0 0 chr3 88531989 88532167 -71067616 - B2_Mm1a SINE B2 -14 179 2 1 1260 479 236 114 0 chr3 88532327 88532450 -71067333 + B4 SINE B4 84 220 -72 1 1260 640 21 103 0 chr3 88532527 88532624 -71067159 + B1_Mur4 SINE Alu 44 150 0 1 1260 271 284 95 0 chr3 88532645 88532740 -71067043 + ID_B1 SINE B4 66 169 -55 1 1260 442 284 0 0 chr3 88534097 88534206 -71065577 + PB1D7 SINE Alu 12 120 0 1 1260 1276 110 5 21 chr3 88535095 88535281 -71064502 - B2_Mm1a SINE B2 -9 184 2 1 1260 23 0 0 0 chr3 88535328 88535351 -71064432 + AT_rich Low_complexity Low_complexity 1 23 0 1 1260 594 186 89 0 chr3 88536074 88536198 -71063585 + B1_Mus2 SINE Alu 5 139 -8 1 1260 1534 187 117 3 chr3 88536212 88536571 -71063212 + RMER19B LTR ERVK 1 400 -502 1 1260 2173 120 88 10 chr3 88536588 88536975 -71062808 + RMER19B LTR ERVK 470 886 -16 1 1260 1133 62 0 33 chr3 88536977 88537128 -71062655 + B1_Mm SINE Alu 2 147 0 1 1260 590 252 0 8 chr3 88537183 88537303 -71062480 + B1_Mur1 SINE Alu 4 122 -27 1 1260 24 32 0 0 chr3 88537560 88537591 -71062192 + AT_rich Low_complexity Low_complexity 1 31 0 1 1260 1214 65 0 6 chr3 88537598 88537769 -71062014 + B2_Mm2 SINE B2 2 171 -24 1 1260 457 278 19 146 chr3 88537770 88537908 -71061875 - B3A SINE B2 -18 180 64 1 1260 2951 21 9 0 chr3 88537908 88538242 -71061541 - IAPLTR1a_Mm LTR ERVK 0 337 1 1 1260 457 278 19 146 chr3 88538242 88538309 -71061474 - B3A SINE B2 -135 63 1 1 1260 286 120 20 0 chr3 88538341 88538391 -71061392 + B3A SINE B2 4 54 -144 1 1260 309 109 0 0 chr3 88538471 88538517 -71061266 + (CA)n Simple_repeat Simple_repeat 1 46 0 1 1260 258 304 19 10 chr3 88538557 88538660 -71061123 - B1F1 SINE Alu 0 149 46 1 1260 491 309 103 10 chr3 88539380 88539583 -71060200 + ID_B1 SINE B4 1 222 -2 1 1260 275 269 205 0 chr3 88539586 88539664 -71060119 + PB1D10 SINE Alu 5 98 -19 1 1260 189 0 0 0 chr3 88539688 88539709 -71060074 + (T)n Simple_repeat Simple_repeat 1 21 0 1 1260 759 80 9 18 chr3 88539709 88539823 -71059960 - B1_Mur4 SINE Alu 0 150 38 1 1260 633 281 136 30 chr3 88540395 88540659 -71059124 + B4 SINE B4 1 292 0 1 1260 318 268 0 35 chr3 88540851 88540936 -71058847 - ID4 SINE ID 0 83 2 1 1260 1093 60 0 0 chr3 88541108 88541242 -71058541 + B1_Mus2 SINE Alu 1 134 -13 1 1260 848 28 9 0 chr3 88541243 88541350 -71058433 + (GAA)n Simple_repeat Simple_repeat 1 108 0 1 1260 207 0 0 0 chr3 88541350 88541373 -71058410 + (CAA)n Simple_repeat Simple_repeat 1 23 0 1 1260 1345 51 33 28 chr3 88541682 88541862 -71057921 - B2_Mm2 SINE B2 -14 181 1 1 1260 428 248 60 0 chr3 88541933 88542050 -71057733 - RSINE1 SINE B4 -33 132 9 1 1260 2904 30 58 10 chr3 88542050 88542450 -71057333 - RLTR10C LTR ERVK 0 436 18 1 1260 270 28 0 0 chr3 88542464 88542500 -71057283 - RLTR10C LTR ERVK -256 36 1 1 1260 279 250 112 0 chr3 88542567 88542647 -71057136 + RSINE1 SINE B4 17 105 -60 1 1260 723 220 85 0 chr3 88542648 88542825 -71056958 + B3 SINE B2 1 192 -24 1 1260 1094 146 95 33 chr3 88543620 88543861 -71055922 + RMER15 LTR ERVL 316 571 -4 1 1260 618 231 194 0 chr3 88543970 88544130 -71055653 - B3 SINE B2 -25 191 1 1 1260 685 221 45 23 chr3 88544163 88544339 -71055444 + B2_Mm2 SINE B2 2 181 -14 1 1260 23 33 0 0 chr3 88544339 88544369 -71055414 + AT_rich Low_complexity Low_complexity 1 30 0 1 1260 713 164 0 47 chr3 88544369 88544497 -71055286 + B1_Mur2 SINE Alu 7 128 -21 1 1260 26 30 0 0 chr3 88544505 88544538 -71055245 + AT_rich Low_complexity Low_complexity 1 33 0 1 1260 328 284 0 0 chr3 88544563 88544637 -71055146 + PB1D7 SINE Alu 20 93 -27 1 1260 267 93 0 0 chr3 88544654 88544697 -71055086 + RMER19B LTR ERVK 1 43 -859 1 1260 4513 141 14 45 chr3 88544697 88545601 -71054182 + RLTR13A3 LTR ERVK 1 978 0 1 1260 338 148 49 0 chr3 88545601 88545660 -71054123 + RMER19B LTR ERVK 35 96 -806 1 1260 1754 169 93 82 chr3 88545667 88546309 -71053474 - RMER19B LTR ERVK -197 705 1 1 1260 195 129 0 0 chr3 88546322 88546353 -71053430 + (A)n Simple_repeat Simple_repeat 1 31 0 1 1260 1112 82 7 20 chr3 88546805 88546954 -71052829 - B1_Mm SINE Alu 0 147 1 1 1260 1129 89 0 0 chr3 88547074 88547220 -71052563 + B1_Mus1 SINE Alu 1 146 -2 1 1260 186 71 0 0 chr3 88547220 88547248 -71052535 + (CAAAC)n Simple_repeat Simple_repeat 2 29 0 1 1260 442 248 35 7 chr3 88547543 88547665 -71052118 + B3 SINE B2 2 123 -72 1 1260 297 0 0 0 chr3 88547665 88547698 -71052085 + (TC)n Simple_repeat Simple_repeat 1 33 0 1 1260 369 0 0 0 chr3 88547698 88547738 -71052045 + (CA)n Simple_repeat Simple_repeat 1 41 0 1 1260 420 290 93 33 chr3 88547738 88547796 -71051987 + B2_Mm2 SINE B2 124 193 -2 1 1260 933 69 0 37 chr3 88547934 88548041 -71051742 + B1_Mm SINE Alu 4 110 -37 1 1260 2773 68 149 115 chr3 88548041 88548536 -71051247 + RLTR1B LTR ERV1 1 512 0 1 1260 933 69 0 37 chr3 88548536 88548564 -71051219 + B1_Mm SINE Alu 111 134 -13 1 1260 182 62 0 30 chr3 88548564 88548597 -71051186 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 1 1260 219 69 0 0 chr3 88549618 88549647 -71050136 + (T)n Simple_repeat Simple_repeat 1 29 0 1 1260 244 80 39 39 chr3 88549906 88549958 -71049825 + A-rich Low_complexity Low_complexity 3 54 0 1 1260 309 51 0 0 chr3 88550435 88550474 -71049309 + (T)n Simple_repeat Simple_repeat 1 39 0 1 1260 1239 27 14 0 chr3 88550474 88550621 -71049162 - B1_Mur4 SINE Alu 0 150 2 1 1260 1325 137 9 0 chr3 88552017 88552236 -71047547 + URR1A DNA MER1_type 1 221 -5 1 1260 237 274 0 0 chr3 88553054 88553105 -71046678 - ID4_ SINE ID -13 70 20 1 1260 247 179 410 0 chr3 88553118 88553196 -71046587 + B1_Mur1 SINE Alu 27 136 -13 1 1260 229 276 50 10 chr3 88553240 88553339 -71046444 - ID_B1 SINE B4 -39 185 83 1 1260 516 277 112 93 chr3 88553656 88553871 -71045912 + B4A SINE B4 1 219 -73 1 1260 744 139 66 0 chr3 88553881 88554018 -71045765 + B1_Mus2 SINE Alu 1 146 -1 1 1260 251 344 58 79 chr3 88554059 88554102 -71045681 + RSINE1 SINE B4 13 45 -120 1 1260 1219 47 0 7 chr3 88554102 88554251 -71045532 - B1_Mus1 SINE Alu 0 148 1 1 1260 251 344 58 79 chr3 88554251 88554346 -71045437 + RSINE1 SINE B4 46 148 -17 1 1260 855 145 138 12 chr3 88554395 88554562 -71045221 + B2_Mm2 SINE B2 2 189 -6 1 1260 1670 36 0 0 chr3 88554565 88554758 -71045025 + B2_Mm1a SINE B2 1 193 0 1 1260 506 232 80 0 chr3 88554818 88554943 -71044840 + ID_B1 SINE B4 82 216 -8 1 1260 660 206 92 0 chr3 88554955 88555086 -71044697 + B1_Mur2 SINE Alu 1 143 -6 1 1260 328 250 0 0 chr3 88555105 88555173 -71044610 + ID4_ SINE ID 3 70 -13 1 1260 652 222 211 32 chr3 88555305 88555552 -71044231 + B4A SINE B4 2 292 0 1 1260 352 168 164 3 chr3 88555949 88556060 -71043723 - B1F2 SINE Alu -25 124 1 1 1260 908 213 33 37 chr3 88556251 88556466 -71043317 - B3 SINE B2 0 216 3 1 1260 475 214 20 0 chr3 88556492 88556590 -71043193 + PB1D9 SINE Alu 19 118 -2 1 1260 294 29 0 0 chr3 88556770 88556805 -71042978 + (A)n Simple_repeat Simple_repeat 1 35 0 1 1260 898 139 56 25 chr3 88556806 88556968 -71042815 - B2_Mm2 SINE B2 -26 169 3 1 1260 1300 77 66 0 chr3 88557018 88557046 -71042737 - B2_Mm2 SINE B2 0 195 166 1 1260 387 0 0 0 chr3 88557046 88557089 -71042694 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 1260 1300 77 66 0 chr3 88557089 88557243 -71042540 - B2_Mm2 SINE B2 -30 165 2 1 1260 759 218 44 49 chr3 88557536 88557739 -71042044 + B3 SINE B2 1 202 -14 1 1260 515 233 176 11 chr3 88557781 88557963 -71041820 + B3 SINE B2 3 214 -2 1 1260 514 250 29 0 chr3 88558108 88558212 -71041571 + PB1D10 SINE Alu 9 115 -2 1 1260 608 270 50 11 chr3 88558318 88558498 -71041285 + B3A SINE B2 2 188 -10 1 1260 402 172 33 44 chr3 88558517 88558595 -71041188 + PB1D9 SINE Alu 27 107 -13 1 1260 189 0 0 0 chr3 88558595 88558616 -71041167 + (CAAA)n Simple_repeat Simple_repeat 4 24 0 1 1260 402 172 33 44 chr3 88558616 88558628 -71041155 + PB1D9 SINE Alu 108 116 -4 1 1260 953 204 71 5 chr3 88558635 88558832 -71040951 + B3 SINE B2 1 210 -6 1 1260 275 71 24 0 chr3 88558833 88558875 -71040908 + (GA)n Simple_repeat Simple_repeat 1 43 0 1 1260 228 312 0 30 chr3 88558878 88558944 -71040839 + B2_Mm1t SINE B2 38 101 -92 1 1260 344 295 0 0 chr3 88559199 88559277 -71040506 + ID_B1 SINE B4 16 93 -131 1 1260 679 195 231 21 chr3 88559346 88559580 -71040203 + Lx9 LINE L1 6968 7250 -394 1 1260 648 213 162 11 chr3 88559680 88559865 -71039918 + B3 SINE B2 3 215 -1 1 1260 267 266 111 34 chr3 88559950 88560067 -71039716 + PB1 SINE Alu 1 126 -1 1 1260 1085 190 75 0 chr3 88561119 88561319 -71038464 + B3 SINE B2 2 216 0 1 1260 1229 42 7 0 chr3 88561336 88561480 -71038303 + B1_Mus1 SINE Alu 3 147 -1 1 1260 218 89 0 43 chr3 88561481 88561528 -71038255 + (CAAAAA)n Simple_repeat Simple_repeat 4 48 0 1 1260 407 250 46 0 chr3 88561542 88561650 -71038133 + PB1D9 SINE Alu 3 115 -5 1 1260 222 312 50 0 chr3 88561650 88561730 -71038053 - B4A SINE B4 -206 86 3 1 1260 211 137 372 0 chr3 88561793 88561844 -71037939 + ID4 SINE ID 2 71 -12 1 1260 697 309 28 0 chr3 88562546 88562763 -71037020 - ID_B1 SINE B4 0 224 2 1 1260 480 291 30 0 chr3 88562788 88562922 -71036861 - ID_B1 SINE B4 -7 217 80 1 1260 407 279 0 141 chr3 88562947 88563006 -71036777 + B1F SINE Alu 28 77 -72 1 1260 1674 50 4 26 chr3 88563006 88563233 -71036550 + L1_Mus2 LINE L1 6345 6566 0 2 1260 407 238 0 83 chr3 88563233 88563345 -71036438 + B1F SINE Alu 47 147 -2 1 1260 483 306 35 59 chr3 88563356 88563526 -71036257 + ID_B1 SINE B4 4 169 -55 2 1260 1073 37 67 0 chr3 88563550 88563684 -71036099 - B1_Mus2 SINE Alu -4 143 1 2 1260 641 117 0 41 chr3 88563725 88563823 -71035960 + B2_Mm2 SINE B2 2 95 -100 2 1260 710 194 89 28 chr3 88564327 88564507 -71035276 + B3A SINE B2 1 191 -7 2 1260 376 235 217 8 chr3 88564537 88564657 -71035126 + RSINE1 SINE B4 2 146 -19 2 1260 219 36 0 0 chr3 88564724 88564752 -71035031 + (CAAAAA)n Simple_repeat Simple_repeat 3 30 0 2 1260 554 235 0 48 chr3 88564777 88564902 -71034881 + ID_B1 SINE B4 98 216 -8 2 1260 655 137 153 0 chr3 88564908 88565032 -71034751 + B1_Mus1 SINE Alu 5 147 -1 2 1260 761 149 43 36 chr3 88565062 88565201 -71034582 + B1_Mur2 SINE Alu 5 144 -5 2 1260 696 189 8 0 chr3 88566674 88566796 -71032987 - B1_Mur2 SINE Alu -6 143 21 2 1260 327 269 88 95 chr3 88566796 88566820 -71032963 - B4 SINE B4 -70 220 76 2 1260 1163 55 14 0 chr3 88566876 88567021 -71032762 - B1_Mus1 SINE Alu -1 147 1 2 1260 1546 67 0 5 chr3 88567032 88567228 -71032555 - B2_Mm2 SINE B2 0 195 1 2 1260 358 244 0 0 chr3 88567258 88567340 -71032443 - B3 SINE B2 -29 187 106 2 1260 549 80 0 0 chr3 88567360 88567435 -71032348 + (TCC)n Simple_repeat Simple_repeat 2 76 0 2 1260 1253 21 0 0 chr3 88567437 88567578 -71032205 - B1_Mus1 SINE Alu -6 142 2 2 1260 441 0 0 0 chr3 88567983 88568032 -71031751 + (TTCC)n Simple_repeat Simple_repeat 1 49 0 2 1260 717 201 8 0 chr3 88568032 88568166 -71031617 - B1_Mur2 SINE Alu -14 135 1 2 1260 758 112 0 0 chr3 88568168 88568275 -71031508 + B1_Mur4 SINE Alu 44 150 0 2 1260 1211 88 41 0 chr3 88568285 88568456 -71031327 + B2_Mm1t SINE B2 2 179 -14 2 1260 332 159 0 39 chr3 88568526 88568593 -71031190 + B2_Mm2 SINE B2 47 109 -107 2 1260 252 0 0 0 chr3 88568601 88568629 -71031154 + (A)n Simple_repeat Simple_repeat 1 28 0 2 1260 794 243 102 0 chr3 88568653 88568830 -71030953 + ID_B1 SINE B4 29 223 -1 2 1260 297 292 26 116 chr3 88568704 88568859 -71030924 + B1_Mur4 SINE Alu 1 141 -9 2 1260 210 241 68 17 chr3 88568826 88568885 -71030898 - B1F SINE Alu -47 102 41 2 1260 188 325 219 16 chr3 88568920 88569048 -71030735 + L2a LINE L2 3273 3426 0 2 1260 1246 35 0 0 chr3 88570297 88570439 -71029344 - B1_Mm SINE Alu -5 142 1 2 1260 755 179 20 40 chr3 88570537 88570688 -71029095 + B1_Mur3 SINE Alu 2 149 0 2 1260 384 77 0 0 chr3 88570688 88570740 -71029043 + (GAAAA)n Simple_repeat Simple_repeat 5 56 0 2 1260 637 245 64 13 chr3 88570772 88570929 -71028854 + B3 SINE B2 50 214 -2 2 1260 346 254 0 0 chr3 88570923 88570994 -71028789 - PB1D9 SINE Alu -13 107 37 2 1260 1104 133 11 39 chr3 88571612 88571792 -71027991 + B2_Mm1t SINE B2 5 179 -14 2 1260 368 160 0 5 chr3 88571839 88571904 -71027879 + B2_Mm2 SINE B2 47 109 -107 2 1260 730 220 0 0 chr3 88571933 88572074 -71027709 - B1_Mur4 SINE Alu -9 141 1 2 1260 680 195 8 0 chr3 88572161 88572279 -71027504 + ID_B1 SINE B4 102 220 -4 2 1260 459 307 47 41 chr3 88572290 88572460 -71027323 + B4A SINE B4 2 172 -120 2 1260 541 294 14 7 chr3 88572491 88572638 -71027145 + B1_Mur3 SINE Alu 2 149 0 2 1260 756 210 7 0 chr3 88572680 88572818 -71026965 + B1_Mur1 SINE Alu 1 139 -10 2 1260 1205 68 0 6 chr3 88572818 88572996 -71026787 + (CAAAC)n Simple_repeat Simple_repeat 2 178 0 2 1260 195 42 0 0 chr3 88572998 88573022 -71026761 + (CAAAT)n Simple_repeat Simple_repeat 1 24 0 2 1260 240 288 91 52 chr3 88573036 88573113 -71026670 + B4 SINE B4 201 280 -12 2 1260 249 33 0 0 chr3 88573389 88573419 -71026364 + (T)n Simple_repeat Simple_repeat 1 30 0 2 1260 1202 41 0 13 chr3 88573419 88573568 -71026215 - B1_Mus2 SINE Alu 0 147 1 2 1260 22 26 0 25 chr3 88573568 88573595 -71026188 + AT_rich Low_complexity Low_complexity 1 27 0 2 1260 1319 95 34 0 chr3 88573595 88573774 -71026009 + B2_Mm2 SINE B2 2 186 -9 2 1260 22 26 0 25 chr3 88573774 88573786 -71025997 + AT_rich Low_complexity Low_complexity 1 12 0 2 1260 454 358 21 26 chr3 88573786 88573978 -71025805 - B3 SINE B2 -25 191 1 2 1260 386 234 0 13 chr3 88574005 88574083 -71025700 - ID_B1 SINE B4 0 224 148 2 1260 514 286 24 36 chr3 88574122 88574289 -71025494 - RSINE1 SINE B4 0 165 1 2 1260 252 218 207 0 chr3 88574382 88574469 -71025314 - B1F SINE Alu -2 147 43 2 1260 264 293 24 12 chr3 88574488 88574571 -71025212 - B1F SINE Alu 0 149 66 2 1260 22 0 0 0 chr3 88574941 88574963 -71024820 + AT_rich Low_complexity Low_complexity 1 22 0 2 1260 250 274 137 0 chr3 88576960 88577033 -71022750 + B1F SINE Alu 45 148 -1 2 1260 276 30 0 0 chr3 88577125 88577158 -71022625 + (TAA)n Simple_repeat Simple_repeat 2 34 0 2 1260 231 234 74 49 chr3 88577417 88577498 -71022285 - B1F SINE Alu 0 149 67 2 1260 455 261 130 0 chr3 88577570 88577685 -71022098 - B1F SINE Alu -14 135 6 2 1260 267 299 110 76 chr3 88577685 88577828 -71021955 + YREP_Mm Unknown Unknown 192 454 -1358 2 1260 606 71 48 0 chr3 88578073 88578157 -71021626 - B1_Mm SINE Alu 0 147 60 2 1260 1054 112 76 27 chr3 88578392 88578576 -71021207 + B2_Mm2 SINE B2 3 195 0 2 1260 496 208 0 19 chr3 88578867 88578975 -71020808 - B1_Mus2 SINE Alu 0 147 42 2 1260 639 70 287 9 chr3 88579493 88579608 -71020175 + B1_Mus1 SINE Alu 2 148 0 2 1260 351 44 0 0 chr3 88580093 88580138 -71019645 + (TG)n Simple_repeat Simple_repeat 1 45 0 2 1260 296 224 17 0 chr3 88580138 88580196 -71019587 + ID4_ SINE ID 3 61 -22 2 1260 377 151 96 0 chr3 88580585 88580658 -71019125 - B1_Mur4 SINE Alu -61 89 10 2 1260 805 168 28 0 chr3 88581797 88581940 -71017843 - B1_Mur4 SINE Alu -3 147 1 2 1260 861 265 5 5 chr3 88582104 88582305 -71017478 - B3 SINE B2 -13 203 3 2 1260 384 22 0 0 chr3 88582660 88582705 -71017078 + (TTTCC)n Simple_repeat Simple_repeat 1 45 0 2 1260 730 165 12 12 chr3 88582706 88582866 -71016917 + CT-rich Low_complexity Low_complexity 1 160 0 2 1260 977 113 0 0 chr3 88582868 88583009 -71016774 - B1_Mus2 SINE Alu -5 142 2 2 1260 549 192 38 9 chr3 88583012 88583117 -71016666 - B3 SINE B2 -5 211 104 2 1260 946 151 134 5 chr3 88583180 88583366 -71016417 - B3 SINE B2 -6 210 1 2 1260 506 252 17 9 chr3 88583576 88583692 -71016091 + B3A SINE B2 2 118 -80 2 1260 637 286 46 5 chr3 88583708 88583905 -71015878 + ID_B1 SINE B4 9 213 -11 2 1260 254 333 104 64 chr3 88583889 88584062 -71015721 - MARNA DNA Mariner -363 223 44 2 1260 482 230 131 31 chr3 88584068 88584198 -71015585 + ID_B1 SINE B4 81 223 -1 2 1260 654 174 149 0 chr3 88584206 88584327 -71015456 + B1_Mur2 SINE Alu 5 143 -6 2 1260 239 297 0 59 chr3 88584352 88584363 -71015420 + B4A SINE B4 82 88 -204 2 1260 282 317 0 0 chr3 88584363 88584423 -71015360 + B1F1 SINE Alu 4 63 -86 2 1260 1041 72 36 0 chr3 88584423 88584562 -71015221 - B1_Mm SINE Alu -3 144 1 2 1260 440 263 0 10 chr3 88584640 88584736 -71015047 - RSINE1 SINE B4 -69 96 2 2 1260 1439 73 21 10 chr3 88584962 88585155 -71014628 + B2_Mm2 SINE B2 1 195 0 2 1260 855 245 47 14 chr3 88585302 88585517 -71014266 - ID_B1 SINE B4 -2 222 1 2 1260 235 349 15 0 chr3 88585598 88585664 -71014119 + PB1D10 SINE Alu 3 69 -48 2 1260 1238 124 148 27 chr3 88585724 88585980 -71013803 + Lx4B LINE L1 6736 7022 -36 2 1260 326 225 118 67 chr3 88586005 88586124 -71013659 - B1_Mm SINE Alu -5 142 18 2 1260 220 225 86 12 chr3 88586141 88586222 -71013561 - RSINE1 SINE B4 -2 163 77 2 1260 333 233 75 35 chr3 88586192 88586329 -71013454 - B1_Mm SINE Alu -10 139 4 2 1260 242 239 53 64 chr3 88586246 88586340 -71013443 - MT2B2 LTR ERVL -337 247 155 2 1260 638 58 11 0 chr3 88586341 88586428 -71013355 + (TTTTC)n Simple_repeat Simple_repeat 2 89 0 2 1260 1133 59 0 0 chr3 88586429 88586565 -71013218 - B1_Mus1 SINE Alu -12 136 1 2 1260 352 225 24 16 chr3 88586573 88586691 -71013092 - B1_Mur2 SINE Alu -3 147 26 2 1260 461 202 65 37 chr3 88586815 88586826 -71012957 - PB1D10 SINE Alu -1 116 109 2 1260 315 0 0 0 chr3 88586826 88586861 -71012922 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 2 1260 461 202 65 37 chr3 88586861 88586957 -71012826 - PB1D10 SINE Alu -9 108 6 2 1260 1399 70 43 0 chr3 88586971 88587156 -71012627 - B2_Mm1a SINE B2 0 193 1 2 1260 1379 189 81 84 chr3 88587195 88587576 -71012207 - ORR1C2 LTR MaLR 0 384 5 2 1260 790 229 47 0 chr3 88587578 88587748 -71012035 - B3 SINE B2 -38 178 1 2 1260 255 312 25 12 chr3 88587856 88587937 -71011846 - ID4_ SINE ID 0 83 2 2 1260 285 29 0 0 chr3 88588442 88588476 -71011307 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 2 1260 290 332 71 22 chr3 88588634 88588859 -71010924 - L1ME3A LINE L1 -153 6020 5785 2 1260 236 323 0 0 chr3 88589037 88589102 -71010681 + ID_B1 SINE B4 84 148 -76 2 1260 1097 95 0 0 chr3 88589342 88589489 -71010294 - B1_Mus2 SINE Alu 0 147 1 3 1260 519 219 164 0 chr3 88589533 88589661 -71010122 - B1_Mur1 SINE Alu 0 149 1 3 1260 636 194 0 0 chr3 88589666 88589800 -71009983 + CT-rich Low_complexity Low_complexity 3 136 0 3 1260 225 319 28 0 chr3 88590653 88590725 -71009058 + RSINE1 SINE B4 2 75 -90 3 1260 330 290 25 127 chr3 88591006 88591164 -71008619 + B1F SINE Alu 8 149 0 3 1260 628 264 0 0 chr3 88591174 88591303 -71008480 + RSINE1 SINE B4 4 132 -33 3 1260 1215 227 100 31 chr3 88591307 88591657 -71008126 - ORR1D1 LTR MaLR 0 374 1 3 1260 388 256 158 60 chr3 88591778 88591911 -71007872 + B1F1 SINE Alu 3 148 -1 3 1260 464 262 134 0 chr3 88591946 88592110 -71007673 + RMER20B LTR ERVK 234 419 -208 3 1260 346 274 15 68 chr3 88592887 88593020 -71006763 - B1F SINE Alu 0 149 24 3 1260 26 0 0 0 chr3 88593539 88593565 -71006218 + AT_rich Low_complexity Low_complexity 1 26 0 3 1260 375 210 0 0 chr3 88593710 88593772 -71006011 + B3 SINE B2 1 62 -154 3 1260 1570 37 27 0 chr3 88595011 88595199 -71004584 - B2_Mm1a SINE B2 0 193 1 3 1260 9657 257 65 61 chr3 88596230 88596477 -71003306 - MurERV4-int LTR ERVK -116 5144 4976 3 1260 5164 99 43 52 chr3 88596477 88596818 -71002965 - Lx3A LINE L1 0 6981 6634 3 1260 1124 110 54 21 chr3 88596818 88597004 -71002779 - B2_Mm1t SINE B2 0 193 2 3 1260 5164 99 43 52 chr3 88597004 88597526 -71002257 - Lx3A LINE L1 -348 6633 6126 3 1260 9657 268 58 54 chr3 88597526 88598795 -71000988 - MurERV4-int LTR ERVK -285 4975 3722 3 1260 1119 96 0 0 chr3 88598795 88598941 -71000842 - B1_Mus2 SINE Alu 0 147 2 3 1260 9657 268 58 54 chr3 88598941 88599688 -71000095 - MurERV4-int LTR ERVK -1539 3721 2962 3 1260 198 0 0 0 chr3 88599688 88599710 -71000073 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 3 1260 9657 268 58 54 chr3 88599710 88600477 -70999306 - MurERV4-int LTR ERVK -2299 2961 2155 3 1260 307 130 0 0 chr3 88600477 88600533 -70999250 - ORR1A4 LTR MaLR -271 56 1 3 1260 9657 268 58 54 chr3 88600533 88600725 -70999058 - MurERV4-int LTR ERVK -2299 2154 1951 3 1260 1062 95 0 26 chr3 88600725 88600876 -70998907 - B1_Mus2 SINE Alu 0 147 1 3 1260 9657 268 58 54 chr3 88600876 88601379 -70998404 - MurERV4-int LTR ERVK -3310 1950 1456 3 1260 1044 93 0 0 chr3 88601506 88601645 -70998138 - B1_Mus1 SINE Alu 0 148 10 3 1260 610 178 6 104 chr3 88601645 88601667 -70998116 - ID_B1 SINE B4 0 222 78 3 1260 1388 284 48 74 chr3 88601667 88601768 -70998015 - MurERV4-int LTR ERVK -1899 1278 1213 3 1260 785 104 100 43 chr3 88601768 88601908 -70997875 - B1_Mus1 SINE Alu 0 148 1 3 1260 1388 284 48 74 chr3 88601908 88602411 -70997372 - MurERV4-int LTR ERVK -1965 1212 690 3 1260 243 258 97 0 chr3 88602904 88602997 -70996786 - Lx9 LINE L1 -485 7159 7058 3 1260 735 175 8 0 chr3 88603065 88603191 -70996592 - Lx9 LINE L1 -548 7096 6970 3 1260 968 179 50 15 chr3 88603197 88603396 -70996387 - B3 SINE B2 -8 208 3 3 1260 386 299 63 63 chr3 88604106 88604295 -70995488 - MYSERV-int LTR ERVK -1465 5085 4897 3 1260 738 226 50 79 chr3 88604367 88604645 -70995138 - RMER17C-int LTR ERVK -362 2876 2607 3 1261 915 175 50 132 chr3 88604836 88605212 -70994571 - RLTR19-int LTR ERVK -3259 2878 2534 3 1261 764 210 7 0 chr3 88605212 88605355 -70994428 + B1_Mus1 SINE Alu 5 148 0 3 1261 1160 82 0 0 chr3 88605456 88605603 -70994180 - B1_Mus2 SINE Alu 0 147 1 3 1261 1560 52 5 0 chr3 88605620 88605811 -70993972 - B2_Mm1a SINE B2 0 193 2 3 1261 1068 72 0 0 chr3 88606409 88606547 -70993236 + B1_Mm SINE Alu 1 138 -9 3 1261 197 33 0 32 chr3 88606557 88606588 -70993195 + (CAAAA)n Simple_repeat Simple_repeat 1 30 0 3 1261 294 29 0 0 chr3 88606650 88606685 -70993098 + (TA)n Simple_repeat Simple_repeat 1 35 0 3 1261 1136 68 0 0 chr3 88606838 88606985 -70992798 + B1_Mm SINE Alu 1 147 0 3 1261 207 0 0 0 chr3 88606985 88607008 -70992775 + (A)n Simple_repeat Simple_repeat 1 23 0 3 1261 1294 20 0 0 chr3 88607214 88607360 -70992423 + B1_Mus2 SINE Alu 2 147 0 3 1261 198 0 0 0 chr3 88607360 88607382 -70992401 + (A)n Simple_repeat Simple_repeat 1 22 0 3 1261 740 229 35 0 chr3 88608929 88609073 -70990710 + B3 SINE B2 1 149 -67 3 1261 2242 221 73 18 chr3 88609083 88609203 -70990580 - RMER15 LTR ERVL 0 575 442 3 1261 1335 88 22 0 chr3 88609203 88609385 -70990398 - B2_Mm2 SINE B2 -7 188 3 3 1261 2242 221 73 18 chr3 88609385 88609809 -70989974 - RMER15 LTR ERVL -134 441 1 3 1261 311 161 0 0 chr3 88609811 88609867 -70989916 + B3 SINE B2 161 216 0 3 1261 3379 35 5 2 chr3 88609911 88610306 -70989477 + MTA_Mm LTR MaLR 1 396 0 3 1261 383 123 0 82 chr3 88610471 88610576 -70989207 + B1_Mur4 SINE Alu 29 150 0 3 1261 2823 148 68 4 chr3 88610905 88611394 -70988389 - RLTR28 LTR ERVL -4 520 1 3 1261 219 273 18 18 chr3 88611579 88611635 -70988148 - ID4_ SINE ID -1 82 27 3 1261 512 282 115 16 chr3 88612790 88612981 -70986802 - ID_B1 SINE B4 0 224 15 3 1261 1225 104 17 6 chr3 88613004 88613178 -70986605 - B2_Mm2 SINE B2 -19 176 1 3 1261 851 226 71 10 chr3 88613476 88613673 -70986110 - B3 SINE B2 -6 210 2 3 1261 939 80 0 21 chr3 88613717 88613858 -70985925 + B1_Mus2 SINE Alu 9 146 -1 3 1261 246 62 0 0 chr3 88613888 88613920 -70985863 + (A)n Simple_repeat Simple_repeat 1 32 0 3 1261 420 247 18 63 chr3 88614223 88614392 -70985391 + B3 SINE B2 36 193 -2 3 1261 212 231 0 0 chr3 88614888 88614927 -70984856 + ID4_ SINE ID 1 39 -44 3 1261 24 0 0 0 chr3 88615021 88615045 -70984738 + AT_rich Low_complexity Low_complexity 1 24 0 3 1261 345 82 0 0 chr3 88615054 88615103 -70984680 + (CA)n Simple_repeat Simple_repeat 1 49 0 3 1261 344 257 65 28 chr3 88615146 88615254 -70984529 - RSINE1 SINE B4 -49 116 5 3 1261 1122 88 0 0 chr3 88615339 88615486 -70984297 - B1_Mus1 SINE Alu -1 147 1 3 1261 1194 61 0 0 chr3 88615549 88615696 -70984087 - B1_Mus2 SINE Alu 0 147 1 3 1261 371 166 235 0 chr3 88616269 88616431 -70983352 - B3 SINE B2 -5 211 12 3 1261 417 54 0 0 chr3 88616433 88616489 -70983294 + (CA)n Simple_repeat Simple_repeat 2 57 0 3 1261 568 205 180 0 chr3 88616623 88616745 -70983038 + B1_Mur4 SINE Alu 2 145 -5 3 1261 371 320 0 0 chr3 88616812 88616934 -70982849 - ID_B1 SINE B4 0 224 103 3 1261 209 95 71 0 chr3 88616936 88616978 -70982805 + T-rich Low_complexity Low_complexity 1 45 0 3 1261 407 255 9 3 chr3 88617020 88617129 -70982654 - B1F1 SINE Alu -8 109 3 3 1261 265 224 0 95 chr3 88617074 88617148 -70982635 - ID_B1 SINE B4 -86 138 72 3 1261 228 234 0 72 chr3 88617239 88617308 -70982475 - ID4 SINE ID -75 77 14 3 1261 1048 115 0 0 chr3 88618105 88618253 -70981530 - B1_Mus1 SINE Alu 0 148 1 3 1261 303 255 235 6 chr3 88618319 88618481 -70981302 - B3 SINE B2 -10 206 8 3 1261 198 0 0 0 chr3 88618491 88618513 -70981270 + (TTTA)n Simple_repeat Simple_repeat 4 25 0 3 1261 315 261 29 0 chr3 88618541 88618610 -70981173 - RSINE1 SINE B4 -14 151 81 3 1261 521 259 22 15 chr3 88618719 88618856 -70980927 - B1F2 SINE Alu -10 139 2 3 1261 192 179 0 0 chr3 88618899 88618938 -70980845 + CT-rich Low_complexity Low_complexity 2 40 0 3 1261 1364 85 0 21 chr3 88619019 88619211 -70980572 + B2_Mm2 SINE B2 1 188 -7 3 1261 1115 132 6 0 chr3 88621886 88622060 -70977723 - B2_Mm1t SINE B2 -18 175 1 3 1261 23 0 0 0 chr3 88622060 88622083 -70977700 + AT_rich Low_complexity Low_complexity 1 23 0 3 1261 296 313 80 29 chr3 88622094 88622232 -70977551 - RSINE1 SINE B4 -2 163 19 3 1261 437 264 129 36 chr3 88622476 88622669 -70977114 + B3 SINE B2 5 215 -1 3 1261 486 271 8 32 chr3 88622771 88622897 -70976886 - B1_Mus2 SINE Alu -23 124 2 3 1261 192 179 0 0 chr3 88622940 88622979 -70976804 + CT-rich Low_complexity Low_complexity 2 40 0 3 1261 1268 91 11 21 chr3 88623059 88623249 -70976534 + B2_Mm2 SINE B2 1 188 -7 3 1261 394 315 68 20 chr3 88625956 88626102 -70973681 - RSINE1 SINE B4 -8 157 5 3 1261 570 238 135 36 chr3 88626345 88626537 -70973246 + B3 SINE B2 5 215 -1 3 1261 622 164 122 8 chr3 88626590 88626713 -70973070 + B1_Mus2 SINE Alu 2 138 -9 3 1261 387 0 0 0 chr3 88626713 88626756 -70973027 + (CAAAC)n Simple_repeat Simple_repeat 2 44 0 3 1261 282 95 0 0 chr3 88626796 88626838 -70972945 + (CCGAA)n Simple_repeat Simple_repeat 4 45 0 3 1261 1999 186 39 9 chr3 88627008 88627448 -70972335 - RLTR11B LTR ERVK 0 453 1 3 1261 226 179 44 133 chr3 88628539 88628629 -70971154 + ID4_ SINE ID 1 82 -1 3 1261 517 215 81 16 chr3 88629692 88629815 -70969968 - B1_Mur1 SINE Alu -5 144 14 3 1261 440 248 75 68 chr3 88629913 88630060 -70969723 - B1_Mur2 SINE Alu 0 149 2 3 1261 734 188 118 0 chr3 88630089 88630259 -70969524 + B2_Mm2 SINE B2 2 191 -4 3 1261 576 27 13 0 chr3 88630281 88630356 -70969427 - B1_Mur4 SINE Alu -4 146 71 3 1261 388 111 14 0 chr3 88630361 88630433 -70969350 - B2_Mm1t SINE B2 -2 191 119 3 1261 942 99 0 7 chr3 88630450 88630592 -70969191 - B1_Mus1 SINE Alu 0 148 8 3 1261 323 284 45 0 chr3 88630607 88630695 -70969088 + B3 SINE B2 115 206 -10 3 1261 339 239 0 0 chr3 88630692 88630763 -70969020 - PB1D9 SINE Alu -13 107 37 3 1261 243 0 0 0 chr3 88631163 88631190 -70968593 + (ACTG)n Simple_repeat Simple_repeat 4 30 0 3 1261 324 128 0 0 chr3 88631227 88631274 -70968509 - PB1D7 SINE Alu -68 52 6 3 1261 205 152 0 0 chr3 88631847 88631880 -70967903 + (TGG)n Simple_repeat Simple_repeat 1 33 0 3 1261 1261 103 23 0 chr3 88631884 88632059 -70967724 + B2_Mm2 SINE B2 3 181 -14 3 1261 345 161 14 0 chr3 88632105 88632170 -70967613 + B2_Mm2 SINE B2 46 116 -82 3 1261 724 220 0 0 chr3 88632200 88632341 -70967442 - B1_Mur4 SINE Alu -9 141 1 4 1261 708 225 172 5 chr3 88632371 88632563 -70967220 + ID_B1 SINE B4 1 224 0 4 1261 405 307 47 41 chr3 88632570 88632740 -70967043 + B4A SINE B4 2 172 -120 4 1261 544 294 14 7 chr3 88632771 88632918 -70966865 + B1_Mur3 SINE Alu 2 149 0 4 1261 751 210 7 0 chr3 88632960 88633098 -70966685 + B1_Mur1 SINE Alu 1 139 -10 4 1261 645 47 0 0 chr3 88633098 88633183 -70966600 + (CAAAC)n Simple_repeat Simple_repeat 2 86 0 4 1261 23 68 0 0 chr3 88633520 88633564 -70966219 + AT_rich Low_complexity Low_complexity 1 44 0 4 1261 1322 95 34 0 chr3 88633569 88633748 -70966035 + B2_Mm2 SINE B2 2 186 -9 4 1261 418 353 21 26 chr3 88633760 88633952 -70965831 - B3 SINE B2 -25 191 1 4 1261 377 219 0 24 chr3 88633979 88634063 -70965720 - ID_B1 SINE B4 0 224 143 4 1261 462 286 24 36 chr3 88634096 88634263 -70965520 - RSINE1 SINE B4 0 165 1 4 1261 231 286 13 13 chr3 88634467 88634545 -70965238 - B1F SINE Alu -6 143 66 4 1261 22 0 0 0 chr3 88634915 88634937 -70964846 + AT_rich Low_complexity Low_complexity 1 22 0 4 1261 229 283 0 0 chr3 88636952 88637005 -70962778 + B1F SINE Alu 96 148 -1 4 1261 249 33 0 0 chr3 88637097 88637127 -70962656 + (TAA)n Simple_repeat Simple_repeat 2 31 0 4 1261 405 270 130 0 chr3 88637551 88637666 -70962117 - B1F SINE Alu -14 135 6 4 1261 22 0 0 0 chr3 88637782 88637804 -70961979 + AT_rich Low_complexity Low_complexity 1 22 0 4 1261 186 43 0 0 chr3 88638053 88638076 -70961707 + (T)n Simple_repeat Simple_repeat 1 23 0 4 1261 616 80 0 0 chr3 88638076 88638164 -70961619 - B1_Mm SINE Alu 0 147 60 4 1261 1070 106 76 27 chr3 88638399 88638583 -70961200 + B2_Mm2 SINE B2 3 195 0 4 1261 458 208 0 19 chr3 88638882 88638990 -70960793 - B1_Mus2 SINE Alu 0 147 42 4 1261 637 53 287 17 chr3 88639508 88639623 -70960160 + B1_Mus2 SINE Alu 2 147 0 4 1261 351 0 0 0 chr3 88640104 88640143 -70959640 + (TG)n Simple_repeat Simple_repeat 1 39 0 4 1261 266 241 17 0 chr3 88640143 88640201 -70959582 + ID4_ SINE ID 3 61 -22 4 1261 349 151 96 0 chr3 88640591 88640664 -70959119 - B1_Mur4 SINE Alu -61 89 10 4 1261 795 168 28 0 chr3 88641803 88641946 -70957837 - B1_Mur4 SINE Alu -3 147 1 4 1261 872 265 5 5 chr3 88642110 88642311 -70957472 - B3 SINE B2 -13 203 3 4 1261 320 271 39 85 chr3 88642807 88642960 -70956823 - B1F SINE Alu 0 149 4 4 1261 327 288 14 50 chr3 88643257 88643396 -70956387 - RSINE1 SINE B4 0 165 32 4 1261 395 290 32 110 chr3 88643678 88643720 -70956063 - B1_Mur2 SINE Alu -5 144 112 4 1261 1624 52 0 0 chr3 88643720 88643913 -70955870 - B2_Mm1a SINE B2 0 193 1 4 1261 395 290 32 110 chr3 88643913 88644025 -70955758 - B1_Mur2 SINE Alu -38 111 2 4 1261 210 270 0 31 chr3 88644315 88644380 -70955403 - 7SLRNA srpRNA srpRNA -231 83 21 4 1261 234 295 8 118 chr3 88644349 88644468 -70955315 - B3A SINE B2 -73 125 20 4 1261 587 156 14 22 chr3 88644811 88644949 -70954834 + CT-rich Low_complexity Low_complexity 4 140 0 4 1261 1118 89 0 0 chr3 88644974 88645120 -70954663 - B1_Mus2 SINE Alu 0 147 2 4 1261 516 183 38 9 chr3 88645123 88645228 -70954555 - B3 SINE B2 -5 211 104 4 1261 1020 143 143 0 chr3 88645291 88645480 -70954303 - B3 SINE B2 0 216 1 4 1261 464 252 17 9 chr3 88645690 88645806 -70953977 + B3A SINE B2 2 118 -80 4 1261 557 260 65 15 chr3 88645820 88646019 -70953764 + ID_B1 SINE B4 5 213 -11 4 1261 368 248 178 31 chr3 88646183 88646312 -70953471 + B1F SINE Alu 1 148 -1 4 1261 651 174 149 0 chr3 88646320 88646441 -70953342 + B1_Mur2 SINE Alu 5 143 -6 4 1261 221 297 0 59 chr3 88646466 88646477 -70953306 + B4A SINE B4 82 88 -204 4 1261 266 317 0 0 chr3 88646477 88646537 -70953246 + B1F1 SINE Alu 4 63 -86 4 1261 1008 86 36 0 chr3 88646537 88646676 -70953107 - B1_Mm SINE Alu -3 144 1 4 1261 409 263 0 10 chr3 88646753 88646849 -70952934 - RSINE1 SINE B4 -69 96 2 4 1261 1450 68 21 10 chr3 88647075 88647268 -70952515 + B2_Mm2 SINE B2 1 195 0 4 1261 767 250 47 14 chr3 88647414 88647629 -70952154 - ID_B1 SINE B4 -2 222 1 4 1261 217 349 15 0 chr3 88647710 88647776 -70952007 + PB1D10 SINE Alu 3 69 -48 4 1261 1213 124 148 27 chr3 88647836 88648092 -70951691 + Lx4B LINE L1 6736 7022 -36 4 1261 284 225 118 67 chr3 88648117 88648236 -70951547 - B1_Mm SINE Alu -5 142 18 4 1261 305 229 72 0 chr3 88648358 88648441 -70951342 - B1_Mm SINE Alu -55 92 4 4 1261 214 73 0 47 chr3 88648447 88648490 -70951293 + (TTTC)n Simple_repeat Simple_repeat 2 42 0 4 1261 1188 74 0 0 chr3 88648491 88648639 -70951144 - B1_Mus1 SINE Alu 0 148 1 4 1261 313 225 12 12 chr3 88648684 88648765 -70951018 - B1_Mur2 SINE Alu -43 106 26 4 1261 433 192 65 37 chr3 88648889 88648900 -70950883 - PB1D10 SINE Alu -1 116 109 4 1261 387 0 0 0 chr3 88648900 88648943 -70950840 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 4 1261 433 192 65 37 chr3 88648943 88649039 -70950744 - PB1D10 SINE Alu -9 108 6 4 1261 1384 76 43 0 chr3 88649052 88649237 -70950546 - B2_Mm1a SINE B2 0 193 1 4 1261 1246 189 82 82 chr3 88649276 88649656 -70950127 - ORR1C2 LTR MaLR 0 384 5 4 1261 710 241 47 0 chr3 88649658 88649828 -70949955 - B3 SINE B2 -38 178 1 4 1261 253 312 25 12 chr3 88649936 88650017 -70949766 - ID4_ SINE ID 0 83 2 4 1261 285 29 0 0 chr3 88650522 88650556 -70949227 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 4 1261 891 84 0 8 chr3 88650867 88650999 -70948784 + B2_Mm2 SINE B2 60 190 -5 4 1261 271 216 27 13 chr3 88651137 88651212 -70948571 - B3 SINE B2 0 216 141 4 1261 372 301 40 24 chr3 88651878 88652004 -70947779 - B1F SINE Alu -11 138 11 4 1261 213 283 52 86 chr3 88651910 88652026 -70947757 - B4A SINE B4 -99 193 82 4 1261 191 88 29 0 chr3 88652048 88652082 -70947701 + (TG)n Simple_repeat Simple_repeat 1 35 0 4 1261 473 232 72 0 chr3 88652098 88652223 -70947560 + RSINE1 SINE B4 11 144 -21 4 1261 269 245 27 73 chr3 88652289 88652399 -70947384 - L1M5 LINE L1 -2569 3577 3473 4 1261 1150 71 0 0 chr3 88652452 88652593 -70947190 + B1_Mus2 SINE Alu 2 142 -5 4 1261 21 36 0 0 chr3 88652672 88652700 -70947083 + AT_rich Low_complexity Low_complexity 1 28 0 4 1261 1526 36 0 58 chr3 88652709 88652914 -70946869 + B2_Mm1a SINE B2 1 193 0 4 1261 376 231 0 21 chr3 88652948 88653041 -70946742 - ID_B1 SINE B4 0 224 134 4 1261 1072 69 21 0 chr3 88653508 88653652 -70946131 - B1_Mus2 SINE Alu 0 147 1 4 1261 1186 61 0 0 chr3 88653734 88653881 -70945902 - B1_Mus2 SINE Alu 0 147 1 4 1261 276 231 154 0 chr3 88653883 88653961 -70945822 - B4A SINE B4 -199 93 4 4 1261 660 206 253 0 chr3 88653989 88654159 -70945624 - B3 SINE B2 0 216 4 4 1261 1207 48 0 0 chr3 88654217 88654364 -70945419 - B1_Mus2 SINE Alu 0 147 1 4 1261 932 177 0 0 chr3 88654663 88654810 -70944973 - B1_Mur3 SINE Alu -2 147 1 4 1261 281 283 45 36 chr3 88655073 88655183 -70944600 + PB1D10 SINE Alu 7 117 0 4 1261 880 124 66 0 chr3 88655245 88655382 -70944401 + B1_Mus2 SINE Alu 2 147 0 4 1261 310 277 113 20 chr3 88655408 88655425 -70944358 - B2_Mm1t SINE B2 -27 166 148 4 1261 462 36 0 0 chr3 88655425 88655481 -70944302 + (TG)n Simple_repeat Simple_repeat 1 56 0 4 1261 420 248 83 5 chr3 88655481 88655614 -70944169 - B3A SINE B2 -46 147 2 4 1261 232 311 65 37 chr3 88655627 88655734 -70944049 - PB1D7 SINE Alu -1 119 10 4 1261 233 29 29 0 chr3 88655751 88655785 -70943998 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 4 1261 349 308 29 0 chr3 88655785 88655889 -70943894 - PB1D10 SINE Alu 0 117 11 4 1261 1469 43 43 11 chr3 88655894 88656082 -70943701 - B2_Mm2 SINE B2 0 195 2 4 1261 428 172 0 11 chr3 88656109 88656197 -70943586 + CT-rich Low_complexity Low_complexity 4 90 0 4 1261 393 22 0 0 chr3 88656456 88656502 -70943281 + (TATG)n Simple_repeat Simple_repeat 1 46 0 4 1261 443 254 64 0 chr3 88656529 88656639 -70943144 - RSINE1 SINE B4 -21 144 28 4 1261 26 0 0 0 chr3 88656639 88656665 -70943118 + AT_rich Low_complexity Low_complexity 1 26 0 4 1261 596 216 6 30 chr3 88656714 88656881 -70942902 - Lx4B LINE L1 0 7058 6896 4 1261 641 198 177 21 chr3 88656882 88657068 -70942715 - B3 SINE B2 -1 215 1 4 1261 431 244 117 8 chr3 88657082 88657210 -70942573 - B1_Mur1 SINE Alu -5 144 3 4 1261 1444 68 21 10 chr3 88657228 88657420 -70942363 - B2_Mm2 SINE B2 -1 194 1 4 1261 993 170 32 21 chr3 88657425 88657611 -70942172 - B2_Mm2 SINE B2 -6 189 2 4 1261 221 224 105 0 chr3 88657727 88657803 -70941980 + MIR SINE MIR 101 184 -78 4 1261 648 92 27 34 chr3 88657858 88658005 -70941778 - RMER17A2 LTR ERVK -396 510 365 4 1261 741 209 0 26 chr3 88658031 88658183 -70941600 - B1_Mus1 SINE Alu 0 148 1 4 1261 458 187 202 47 chr3 88658199 88658328 -70941455 - B1_Mur1 SINE Alu 0 149 1 4 1261 1144 28 43 0 chr3 88659240 88659381 -70940402 - B1_Mus2 SINE Alu 0 147 1 4 1261 362 261 45 9 chr3 88660083 88660195 -70939588 - B1F SINE Alu -10 139 24 4 1261 270 160 0 0 chr3 88660662 88660712 -70939071 + CT-rich Low_complexity Low_complexity 2 51 0 5 1261 397 221 89 51 chr3 88660859 88661016 -70938767 - RSINE1 SINE B4 -1 164 2 5 1261 21 0 0 0 chr3 88661307 88661328 -70938455 + AT_rich Low_complexity Low_complexity 1 21 0 5 1261 864 182 0 20 chr3 88661638 88661789 -70937994 - B1_Mur1 SINE Alu 0 149 2 5 1261 201 147 0 0 chr3 88661991 88662025 -70937758 + (TATG)n Simple_repeat Simple_repeat 3 36 0 5 1261 454 315 6 24 chr3 88662039 88662205 -70937578 - RSINE1 SINE B4 0 165 3 5 1261 21 0 0 0 chr3 88663172 88663193 -70936590 + AT_rich Low_complexity Low_complexity 1 21 0 5 1261 294 96 51 0 chr3 88663201 88663257 -70936526 - B1_Mur4 SINE Alu -85 65 1 5 1261 305 262 164 47 chr3 88663278 88663406 -70936377 - B1_Mur2 SINE Alu -6 143 1 5 1261 216 211 0 0 chr3 88663467 88663505 -70936278 + PB1D9 SINE Alu 1 38 -82 5 1261 411 122 149 0 chr3 88663695 88663769 -70936014 + B1_Mus2 SINE Alu 62 146 -1 5 1261 414 311 148 6 chr3 88663810 88663972 -70935811 + B3 SINE B2 32 216 0 5 1261 634 218 113 0 chr3 88664149 88664282 -70935501 + B1_Mur1 SINE Alu 2 149 0 5 1261 236 56 28 0 chr3 88664371 88664407 -70935376 + ID_B1 SINE B4 180 216 -8 5 1261 217 208 264 0 chr3 88664505 88664577 -70935206 + B1_Mur1 SINE Alu 44 134 -15 5 1261 844 293 92 14 chr3 88664583 88665015 -70934768 + L1_Mur3 LINE L1 3773 4284 -1859 5 1261 375 23 0 0 chr3 88665039 88665083 -70934700 + (ATTG)n Simple_repeat Simple_repeat 4 47 0 5 1261 265 227 61 0 chr3 88665254 88665320 -70934463 - B4 SINE B4 -218 74 5 5 1261 316 303 95 1 chr3 88665326 88665649 -70934134 + L1_Mur3 LINE L1 4264 4654 -1489 5 1261 400 347 6 56 chr3 88665649 88665829 -70933954 + B4A SINE B4 3 173 -119 5 1261 195 100 0 0 chr3 88665904 88665934 -70933849 + (CCA)n Simple_repeat Simple_repeat 1 30 0 5 1261 496 101 99 22 chr3 88666012 88666103 -70933680 - B1_Mur4 SINE Alu 0 150 53 5 1261 648 305 69 26 chr3 88666275 88666578 -70933205 + L1MB7 LINE L1 5849 6164 -20 5 1261 806 205 101 15 chr3 88666626 88666824 -70932959 + B3 SINE B2 2 216 0 5 1261 849 181 18 24 chr3 88666840 88667004 -70932779 + U1 snRNA snRNA 1 163 -2 5 1261 447 222 99 27 chr3 88667100 88667211 -70932572 - PB1D9 SINE Alu 0 120 2 5 1261 216 86 0 0 chr3 88667572 88667607 -70932176 + (TG)n Simple_repeat Simple_repeat 2 36 0 5 1261 343 302 37 9 chr3 88667608 88667715 -70932068 + PB1D7 SINE Alu 6 115 -5 5 1261 247 191 55 68 chr3 88667731 88667804 -70931979 + tRNA-Ala-GCY_ tRNA tRNA 1 72 -3 5 1261 869 73 0 0 chr3 88667958 88668068 -70931715 + B1_Mus2 SINE Alu 2 111 -36 5 1261 330 215 12 60 chr3 88668047 88668131 -70931652 + RSINE1 SINE B4 21 100 -65 5 1261 309 26 0 0 chr3 88668133 88668171 -70931612 + (CA)n Simple_repeat Simple_repeat 1 38 0 5 1261 1113 78 163 0 chr3 88668409 88668575 -70931208 + B2_Mm1t SINE B2 1 193 0 5 1261 519 247 0 58 chr3 88668632 88668760 -70931023 + B1_Mur1 SINE Alu 6 122 -25 5 1261 284 232 18 0 chr3 88668756 88668812 -70930971 - B1F2 SINE Alu -46 103 47 5 1261 222 37 0 0 chr3 88668814 88668841 -70930942 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 5 1261 425 316 26 0 chr3 88668841 88668958 -70930825 - RSINE1 SINE B4 -44 121 2 5 1261 513 220 59 0 chr3 88668998 88669116 -70930667 - B3A SINE B2 -73 125 1 5 1261 243 200 127 114 chr3 88669136 88669215 -70930568 - MT2B LTR ERVL -347 254 175 5 1261 1179 122 5 27 chr3 88669224 88669409 -70930374 - B2_Mm1t SINE B2 -9 184 4 5 1261 30 27 0 0 chr3 88669447 88669484 -70930299 + AT_rich Low_complexity Low_complexity 1 37 0 5 1261 346 319 21 11 chr3 88669499 88669594 -70930189 - ID_B1 SINE B4 -114 110 15 5 1261 600 218 0 18 chr3 88669591 88669703 -70930080 - B1_Mur3 SINE Alu -39 110 1 5 1261 353 314 38 76 chr3 88669703 88669744 -70930039 - B4 SINE B4 -203 89 54 5 1261 710 256 0 0 chr3 88669784 88669917 -70929866 + B1_Mus2 SINE Alu 15 147 0 5 1261 1189 61 0 20 chr3 88670019 88670169 -70929614 - B1_Mus2 SINE Alu 0 147 1 5 1261 368 105 2 0 chr3 88670215 88670273 -70929510 - B1_Mur2 SINE Alu 0 149 91 5 1261 224 270 31 16 chr3 88670501 88670565 -70929218 - ID SINE ID -144 80 16 5 1261 225 319 28 0 chr3 88671050 88671122 -70928661 + RSINE1 SINE B4 2 75 -90 5 1261 330 290 25 127 chr3 88671403 88671561 -70928222 + B1F SINE Alu 8 149 0 5 1261 621 271 0 0 chr3 88671571 88671700 -70928083 + RSINE1 SINE B4 4 132 -33 5 1261 1215 227 100 31 chr3 88671704 88672054 -70927729 - ORR1D1 LTR MaLR 0 374 1 5 1261 388 256 158 60 chr3 88672175 88672308 -70927475 + B1F1 SINE Alu 3 148 -1 5 1261 288 0 0 0 chr3 88672321 88672353 -70927430 + (CA)n Simple_repeat Simple_repeat 2 33 0 5 1261 464 262 134 0 chr3 88672359 88672523 -70927260 + RMER20B LTR ERVK 234 419 -208 5 1261 353 274 15 68 chr3 88673301 88673434 -70926349 - B1F SINE Alu 0 149 24 5 1261 228 412 23 0 chr3 88673463 88673594 -70926189 + L2a LINE L2 3285 3418 -8 5 1261 29 0 0 0 chr3 88673984 88674013 -70925770 + AT_rich Low_complexity Low_complexity 1 29 0 5 1261 375 210 0 0 chr3 88674158 88674220 -70925563 + B3 SINE B2 1 62 -154 5 1261 1570 37 27 0 chr3 88675460 88675648 -70924135 - B2_Mm1a SINE B2 0 193 1 5 1261 9688 257 65 61 chr3 88676679 88676926 -70922857 - MurERV4-int LTR ERVK -116 5144 4976 5 1261 5162 101 43 51 chr3 88676926 88677266 -70922517 - Lx3A LINE L1 0 6981 6639 5 1261 1124 110 54 21 chr3 88677266 88677452 -70922331 - B2_Mm1t SINE B2 0 193 2 5 1261 5162 101 43 51 chr3 88677452 88677974 -70921809 - Lx3A LINE L1 -343 6638 6126 5 1261 9688 267 58 54 chr3 88677974 88679236 -70920547 - MurERV4-int LTR ERVK -285 4975 3714 5 1261 1130 96 0 0 chr3 88679236 88679382 -70920401 - B1_Mus2 SINE Alu 0 147 2 5 1261 9688 267 58 54 chr3 88679382 88680132 -70919651 - MurERV4-int LTR ERVK -1547 3713 2962 5 1261 234 0 0 0 chr3 88680132 88680158 -70919625 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 5 1261 9688 267 58 54 chr3 88680158 88680924 -70918859 - MurERV4-int LTR ERVK -2299 2961 2153 5 1261 307 130 0 0 chr3 88680924 88680980 -70918803 - ORR1A4 LTR MaLR -271 56 1 5 1261 9688 267 58 54 chr3 88680980 88681182 -70918601 - MurERV4-int LTR ERVK -2299 2152 1938 5 1261 1118 82 0 0 chr3 88681182 88681329 -70918454 - B1_Mus2 SINE Alu 0 147 1 5 1261 9688 277 56 56 chr3 88681329 88681906 -70917877 - MurERV4-int LTR ERVK -3323 1937 1146 5 1261 1040 86 0 0 chr3 88681961 88682100 -70917683 - B1_Mus1 SINE Alu 0 148 10 5 1261 471 253 36 115 chr3 88681966 88682131 -70917652 - B4 SINE B4 -71 221 70 5 1261 1294 290 49 77 chr3 88682131 88682224 -70917559 - MYSERV6-int LTR ERVK -1908 1269 1213 5 1261 767 119 100 43 chr3 88682224 88682364 -70917419 - B1_Mus1 SINE Alu 0 148 1 5 1261 1324 291 49 75 chr3 88682364 88682885 -70916898 - MYSERV6-int LTR ERVK -1965 1212 484 5 1261 243 258 97 0 chr3 88683360 88683453 -70916330 - Lx9 LINE L1 -485 7159 7058 5 1261 742 175 8 0 chr3 88683521 88683647 -70916136 - Lx9 LINE L1 -548 7096 6970 5 1261 968 179 50 15 chr3 88683653 88683852 -70915931 - B3 SINE B2 -8 208 3 5 1261 383 299 63 63 chr3 88684562 88684751 -70915032 - MYSERV-int LTR ERVK -1465 5085 4897 5 1261 724 230 50 79 chr3 88684823 88685101 -70914682 - RMER17C-int LTR ERVK -362 2876 2607 5 1261 935 208 71 85 chr3 88685216 88685652 -70914131 - RLTR19-int LTR ERVK -3259 2878 2534 5 1261 756 203 7 0 chr3 88685668 88685806 -70913977 + B1_Mus1 SINE Alu 5 143 -5 5 1261 1163 68 0 0 chr3 88685905 88686052 -70913731 - B1_Mus2 SINE Alu 0 147 1 5 1261 1051 87 0 0 chr3 88686649 88686787 -70912996 + B1_Mm SINE Alu 1 138 -9 5 1261 197 33 0 32 chr3 88686796 88686827 -70912956 + (CAAAA)n Simple_repeat Simple_repeat 1 30 0 5 1261 330 26 0 0 chr3 88686888 88686927 -70912856 + (TA)n Simple_repeat Simple_repeat 1 39 0 5 1261 1200 48 0 0 chr3 88687080 88687227 -70912556 + B1_Mm SINE Alu 1 147 0 5 1261 1250 41 0 0 chr3 88687442 88687588 -70912195 + B1_Mus2 SINE Alu 2 147 0 5 1261 21 0 0 0 chr3 88687588 88687609 -70912174 + AT_rich Low_complexity Low_complexity 1 21 0 5 1261 992 237 23 28 chr3 88687892 88688050 -70911733 + B3 SINE B2 1 161 -55 5 1261 2161 218 68 11 chr3 88688050 88688166 -70911617 - RMER15 LTR ERVL -2 573 445 5 1261 1416 71 22 0 chr3 88688166 88688348 -70911435 - B2_Mm2 SINE B2 -7 188 3 5 1261 2161 218 68 11 chr3 88688348 88688773 -70911010 - RMER15 LTR ERVL -131 444 2 5 1261 992 237 23 28 chr3 88688773 88688831 -70910952 + B3 SINE B2 162 216 0 5 1261 3162 51 13 5 chr3 88688874 88689267 -70910516 + MTA_Mm LTR MaLR 1 396 0 5 1261 370 148 0 69 chr3 88689432 88689536 -70910247 + B1_Mus2 SINE Alu 29 147 0 5 1261 2830 146 68 4 chr3 88689904 88690393 -70909390 - RLTR28 LTR ERVL -4 520 1 5 1261 219 273 18 18 chr3 88690578 88690634 -70909149 - ID4_ SINE ID -1 82 27 5 1261 580 282 115 16 chr3 88691793 88691984 -70907799 - ID_B1 SINE B4 0 224 15 5 1261 1223 104 17 6 chr3 88692007 88692181 -70907602 - B2_Mm2 SINE B2 -19 176 1 5 1261 255 243 50 69 chr3 88692463 88692478 -70907305 + ORR1B1-int LTR MaLR 599 617 -892 5 1261 884 215 71 10 chr3 88692478 88692675 -70907108 - B3 SINE B2 -6 210 2 5 1261 255 243 50 69 chr3 88692675 88692818 -70906965 + ORR1B1-int LTR MaLR 618 754 -755 5 1261 1001 80 0 21 chr3 88692719 88692860 -70906923 + B1_Mus2 SINE Alu 9 146 -1 5 1261 242 183 111 14 chr3 88692870 88692942 -70906841 - RMER1C Other Other -88 1254 1176 5 1261 428 281 57 34 chr3 88693223 88693400 -70906383 + B3 SINE B2 36 216 0 5 1261 226 231 0 0 chr3 88693890 88693929 -70905854 + ID4_ SINE ID 1 39 -44 5 1261 21 36 0 0 chr3 88694023 88694051 -70905732 + AT_rich Low_complexity Low_complexity 1 28 0 5 1261 315 0 0 0 chr3 88694070 88694105 -70905678 + (CA)n Simple_repeat Simple_repeat 1 35 0 6 1261 387 259 63 27 chr3 88694148 88694259 -70905524 - RSINE1 SINE B4 -49 116 2 6 1261 1169 68 0 0 chr3 88694348 88694495 -70905288 - B1_Mus2 SINE Alu 0 147 1 6 1261 406 172 215 25 chr3 88695058 88695230 -70904553 - B3 SINE B2 0 216 12 6 1261 669 76 0 0 chr3 88695232 88695324 -70904459 + (CA)n Simple_repeat Simple_repeat 2 93 0 6 1261 561 213 180 0 chr3 88695458 88695580 -70904203 + B1_Mur4 SINE Alu 2 145 -5 6 1261 404 320 0 0 chr3 88695647 88695769 -70904014 - ID_B1 SINE B4 0 224 103 6 1261 306 329 53 59 chr3 88695832 88695852 -70903931 - ID_B1 SINE B4 -2 222 151 6 1261 445 250 10 14 chr3 88695852 88695965 -70903818 - B1F1 SINE Alu -8 112 3 6 1261 306 329 53 59 chr3 88695965 88695984 -70903799 - ID_B1 SINE B4 -2 150 72 6 1261 246 234 0 72 chr3 88696075 88696144 -70903639 - ID4 SINE ID -75 77 14 6 1261 219 221 63 91 chr3 88696100 88696229 -70903554 - B1F SINE Alu -16 133 16 6 1261 1195 61 0 0 chr3 88696939 88697087 -70902696 - B1_Mus1 SINE Alu 0 148 1 6 1261 402 226 216 18 chr3 88697101 88697272 -70902511 - B3 SINE B2 -4 212 8 6 1261 285 29 0 0 chr3 88697282 88697316 -70902467 + (TTTA)n Simple_repeat Simple_repeat 4 37 0 6 1261 338 261 29 0 chr3 88697344 88697413 -70902370 - RSINE1 SINE B4 -14 151 81 6 1261 525 259 22 15 chr3 88697522 88697659 -70902124 - B1F2 SINE Alu -10 139 2 6 1261 192 179 0 0 chr3 88697702 88697741 -70902042 + CT-rich Low_complexity Low_complexity 2 40 0 6 1261 1366 76 5 26 chr3 88697831 88698021 -70901762 + B2_Mm1t SINE B2 1 186 -7 6 1261 429 336 61 7 chr3 88700728 88700875 -70898908 - RSINE1 SINE B4 -6 159 5 6 1261 180 111 0 0 chr3 88700903 88700930 -70898853 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 6 1261 457 236 133 46 chr3 88701115 88701310 -70898473 + B3 SINE B2 4 215 -1 6 1261 337 236 21 124 chr3 88701329 88701364 -70898419 + MT2B LTR ERVL 136 264 -336 6 1261 583 202 18 0 chr3 88701364 88701473 -70898310 + B1_Mus2 SINE Alu 2 112 -35 6 1261 210 37 0 0 chr3 88701489 88701516 -70898267 + (CAAAC)n Simple_repeat Simple_repeat 2 28 0 6 1261 255 234 21 0 chr3 88701517 88701564 -70898219 + tRNA-Ala-GCY_ tRNA tRNA 18 65 -10 6 1261 1568 188 34 6 chr3 88701690 88702011 -70897772 - RLTR11B LTR ERVK -123 330 1 6 1261 227 212 22 111 chr3 88703079 88703169 -70896614 + ID4_ SINE ID 1 82 -1 6 1261 584 215 76 15 chr3 88704232 88704364 -70895419 - B1F2 SINE Alu -5 144 5 6 1261 193 350 62 57 chr3 88704375 88704569 -70895214 - L2a LINE L2 -22 3404 3210 6 1261 446 155 0 10 chr3 88704613 88704711 -70895072 + (TG)n Simple_repeat Simple_repeat 2 98 0 6 1261 474 252 30 59 chr3 88704714 88704849 -70894934 + B1F SINE Alu 18 148 -1 6 1261 193 278 37 0 chr3 88705124 88705178 -70894605 + MIRc SINE MIR 188 243 -25 6 1261 298 240 26 13 chr3 88705245 88705321 -70894462 - PB1D10 SINE Alu 0 117 41 6 1261 779 238 50 0 chr3 88705688 88705848 -70893935 - B3 SINE B2 0 216 49 6 1261 222 311 80 13 chr3 88706242 88706317 -70893466 + RSINE1 SINE B4 3 82 -83 6 1261 594 218 0 26 chr3 88706363 88706476 -70893307 + RSINE1 SINE B4 32 141 -24 6 1261 504 0 0 0 chr3 88706479 88706535 -70893248 + (CA)n Simple_repeat Simple_repeat 2 57 0 6 1261 29 0 0 0 chr3 88706535 88706564 -70893219 + AT_rich Low_complexity Low_complexity 1 29 0 6 1261 341 242 119 20 chr3 88707220 88707321 -70892462 + PB1D10 SINE Alu 1 111 -6 6 1261 282 295 50 50 chr3 88707876 88707976 -70891807 - B3A SINE B2 -98 100 1 6 1261 354 252 108 42 chr3 88708000 88708120 -70891663 - B1_Mus2 SINE Alu -1 146 19 6 1261 400 310 31 31 chr3 88708163 88708323 -70891460 - RSINE1 SINE B4 -2 163 4 6 1261 367 225 43 35 chr3 88708384 88708499 -70891284 - PB1D9 SINE Alu 0 120 5 6 1261 693 223 180 17 chr3 88708546 88708724 -70891059 - B3 SINE B2 -6 210 4 6 1261 1067 102 83 12 chr3 88708751 88708919 -70890864 - B2_Mm2 SINE B2 -14 181 2 6 1261 508 230 9 17 chr3 88709773 88709888 -70889895 + ID_B1 SINE B4 102 215 -9 6 1261 616 321 36 45 chr3 88709907 88710129 -70889654 - ID_B1 SINE B4 -1 223 4 6 1261 356 226 206 0 chr3 88710178 88710280 -70889503 - ID_B1 SINE B4 -7 217 95 6 1261 724 227 0 0 chr3 88710273 88710405 -70889378 - B1_Mur4 SINE Alu -18 132 1 6 1261 913 109 0 0 chr3 88710433 88710552 -70889231 + 5S rRNA rRNA 3 121 0 6 1261 907 192 76 20 chr3 88710695 88710892 -70888891 + B3 SINE B2 3 210 -6 6 1261 477 103 0 14 chr3 88711665 88711734 -70888049 + B1_Mur1 SINE Alu 80 147 -2 6 1261 440 217 87 55 chr3 88712838 88712965 -70886818 - B1_Mur1 SINE Alu -4 145 15 6 1261 489 76 0 0 chr3 88712969 88713035 -70886748 + (TG)n Simple_repeat Simple_repeat 1 66 0 6 1261 180 125 0 0 chr3 88713075 88713107 -70886676 + (C)n Simple_repeat Simple_repeat 1 32 0 6 1261 654 199 103 46 chr3 88716275 88716470 -70883313 - B3 SINE B2 -2 214 9 6 1261 318 264 162 9 chr3 88716950 88717061 -70882722 - B1_Mur1 SINE Alu -13 136 9 6 1261 1225 41 0 13 chr3 88717131 88717280 -70882503 + B1_Mus1 SINE Alu 1 147 -1 6 1261 643 211 37 15 chr3 88718320 88718455 -70881328 - B1_Mur1 SINE Alu 0 149 12 6 1261 1148 82 0 7 chr3 88718488 88718635 -70881148 - B1_Mm SINE Alu -1 146 1 6 1261 292 294 136 45 chr3 88718695 88718827 -70880956 + ID_B1 SINE B4 81 224 0 6 1261 249 250 37 65 chr3 88718900 88719007 -70880776 + RSINE1 SINE B4 2 105 -60 6 1261 1371 89 21 0 chr3 88719126 88719317 -70880466 - B2_Mm2 SINE B2 0 195 1 6 1261 1113 50 0 0 chr3 88719334 88719474 -70880309 - B1_Mus1 SINE Alu 0 148 9 6 1261 1153 78 18 0 chr3 88719482 88719648 -70880135 - B2_Mm2 SINE B2 -25 170 2 6 1261 401 256 95 29 chr3 88719676 88719813 -70879970 - RSINE1 SINE B4 0 165 20 6 1261 412 254 212 11 chr3 88719842 88720021 -70879762 + B3 SINE B2 1 215 -1 6 1261 367 263 63 0 chr3 88720026 88720121 -70879662 + B3A SINE B2 2 102 -96 6 1261 460 295 40 16 chr3 88720576 88720700 -70879083 + B3A SINE B2 65 191 -7 6 1261 423 275 147 7 chr3 88720847 88720990 -70878793 - ORR1D1 LTR MaLR -211 163 1 6 1261 372 336 99 50 chr3 88721053 88721194 -70878589 + RSINE1 SINE B4 16 163 -2 6 1261 500 193 55 0 chr3 88721312 88721420 -70878363 + PB1D10 SINE Alu 1 120 0 6 1261 1340 212 63 16 chr3 88721475 88721821 -70877962 + RMER1B Other Other 572 891 -175 6 1261 1656 242 90 31 chr3 88722053 88722407 -70877376 + RMER1C Other Other 675 1030 -312 6 1261 567 0 0 0 chr3 88722407 88722470 -70877313 + (GA)n Simple_repeat Simple_repeat 1 63 0 6 1261 1631 242 90 31 chr3 88722470 88722605 -70877178 + RMER1C Other Other 1031 1192 -150 6 1261 402 182 11 43 chr3 88722623 88722715 -70877068 + RMER1C Other Other 1242 1330 -12 6 1261 719 125 60 87 chr3 88722715 88722864 -70876919 + B1_Mus1 SINE Alu 3 147 -1 6 1261 3431 180 57 63 chr3 88723118 88723978 -70875805 + RLTR13A LTR ERVK 1 855 0 6 1261 875 195 69 33 chr3 88724316 88724692 -70875091 + MT2A LTR ERVL 42 488 -45 6 1261 225 0 0 0 chr3 88724707 88724732 -70875051 + (CA)n Simple_repeat Simple_repeat 2 26 0 6 1261 509 215 28 0 chr3 88724742 88724849 -70874934 - B1_Mur3 SINE Alu -7 142 33 6 1261 240 111 0 0 chr3 88725089 88725134 -70874649 + (A)n Simple_repeat Simple_repeat 1 45 0 6 1261 2367 185 171 21 chr3 88725146 88725798 -70873985 + RMER19B LTR ERVK 1 698 -204 6 1261 243 221 13 105 chr3 88725813 88725889 -70873894 + B4A SINE B4 210 278 -14 6 1261 277 215 127 0 chr3 88726316 88726395 -70873388 + B1F1 SINE Alu 2 90 -59 6 1261 303 248 151 40 chr3 88726925 88727051 -70872732 + ID_B1 SINE B4 83 222 -2 6 1261 210 118 0 0 chr3 88728284 88728318 -70871465 + (A)n Simple_repeat Simple_repeat 1 34 0 6 1261 286 143 190 25 chr3 88728433 88728512 -70871271 + B3 SINE B2 3 94 -122 6 1261 26 0 0 0 chr3 88728557 88728583 -70871200 + AT_rich Low_complexity Low_complexity 1 26 0 6 1261 261 276 144 24 chr3 88728881 88729048 -70870735 + ORR1E LTR MaLR 51 237 -122 6 1261 266 151 0 54 chr3 88729586 88729642 -70870141 + B1F SINE Alu 97 149 0 6 1261 1166 88 134 0 chr3 88729666 88729837 -70869946 + B2_Mm2 SINE B2 2 195 0 6 1261 756 164 224 0 chr3 88729959 88730142 -70869641 - URR1A DNA MER1_type 0 226 3 6 1261 310 242 110 0 chr3 88730632 88730723 -70869060 + PB1D9 SINE Alu 15 115 -5 6 1261 196 150 16 32 chr3 88730735 88730797 -70868986 + (CAGA)n Simple_repeat Simple_repeat 2 62 0 6 1261 217 234 0 21 chr3 88731126 88731174 -70868609 + GA-rich Low_complexity Low_complexity 4 50 0 6 1261 1184 194 224 20 chr3 88731345 88731693 -70868090 + MTD LTR MaLR 1 419 0 6 1261 215 305 17 0 chr3 88731740 88731799 -70867984 - ID4_ SINE ID -3 80 21 6 1261 391 289 16 29 chr3 88731861 88732047 -70867736 - B3 SINE B2 -13 182 1 6 1261 236 254 17 0 chr3 88732704 88732763 -70867020 - RSINE1 SINE B4 0 165 106 6 1261 339 260 39 0 chr3 88732919 88732996 -70866787 + B1F SINE Alu 44 123 -26 6 1261 433 220 59 8 chr3 88733559 88733678 -70866105 - B3 SINE B2 -81 135 11 6 1261 1312 92 32 11 chr3 88733896 88734083 -70865700 + B2_Mm2 SINE B2 1 191 -4 7 1261 1160 28 35 0 chr3 88734516 88734659 -70865124 + B1_Mus1 SINE Alu 1 148 0 7 1261 476 229 9 19 chr3 88734720 88734827 -70864956 + PB1D9 SINE Alu 9 114 -6 7 1261 756 135 20 54 chr3 88735386 88735535 -70864248 - B1_Mur4 SINE Alu 0 150 7 7 1261 345 292 71 0 chr3 88735560 88735673 -70864110 + RSINE1 SINE B4 34 154 -11 7 157 360 290 20 52 chr3 88735726 88735879 -70863904 + B1F SINE Alu 1 148 -1 7 1262 254 285 83 15 chr3 88735991 88736123 -70863660 + B4 SINE B4 40 180 -112 7 1262 627 257 53 5 chr3 88736169 88736357 -70863426 + B3 SINE B2 1 197 -19 7 1262 572 0 15 0 chr3 88736528 88736596 -70863187 + (TC)n Simple_repeat Simple_repeat 2 70 0 7 1262 1191 68 0 0 chr3 88736608 88736754 -70863029 + B1_Mus2 SINE Alu 2 147 0 7 1262 226 269 75 0 chr3 88736771 88736838 -70862945 - ID_B1 SINE B4 -54 170 99 7 1262 371 300 0 39 chr3 88736853 88736957 -70862826 - B1F SINE Alu -8 141 42 7 1262 1320 96 11 0 chr3 88736978 88737155 -70862628 - B2_Mm2 SINE B2 -14 181 3 7 1262 227 294 0 0 chr3 88737155 88737206 -70862577 - B1F2 SINE Alu -93 56 6 7 1262 346 291 18 10 chr3 88737648 88737761 -70862022 + B1F1 SINE Alu 2 119 -1 7 1262 194 0 0 37 chr3 88737804 88737831 -70861952 + (CCA)n Simple_repeat Simple_repeat 3 28 0 7 1262 423 264 0 26 chr3 88737903 88738016 -70861767 - PB1D10 SINE Alu -7 110 1 7 1262 403 295 32 16 chr3 88738040 88738164 -70861619 + RSINE1 SINE B4 4 129 -36 7 1262 223 97 0 0 chr3 88738763 88738794 -70860989 - B1_Mus1 SINE Alu -109 39 9 7 1262 468 246 98 8 chr3 88739019 88739142 -70860641 - B1_Mm SINE Alu -1 146 13 7 1262 250 299 86 36 chr3 88739142 88739158 -70860625 - ID_B1 SINE B4 0 224 79 7 1262 2700 138 8 26 chr3 88739327 88739796 -70859987 + RMER6B LTR ERVK 1 461 0 7 1262 1039 65 65 0 chr3 88739800 88739939 -70859844 + B1_Mus1 SINE Alu 1 148 0 7 1262 360 256 27 8 chr3 88740505 88740620 -70859163 - PB1 SINE Alu 0 127 14 7 1262 512 190 80 0 chr3 88741516 88741616 -70858167 - B1_Mur1 SINE Alu 0 149 42 7 1262 356 284 39 39 chr3 88741964 88742092 -70857691 - RSINE1 SINE B4 -35 130 3 7 1262 258 226 143 50 chr3 88742247 88742307 -70857476 - B4A SINE B4 -137 155 3 7 1262 271 202 25 12 chr3 88742307 88742387 -70857396 - B3A SINE B2 -115 83 3 7 1262 706 250 112 0 chr3 88742777 88742965 -70856818 + B3 SINE B2 4 212 -4 7 1262 566 236 28 21 chr3 88743201 88743344 -70856439 - B1_Mur2 SINE Alu -2 147 4 7 1262 1184 55 0 0 chr3 88743492 88743638 -70856145 - B1_Mus2 SINE Alu -1 146 1 7 1262 841 214 28 33 chr3 88743675 88743888 -70855895 + B3 SINE B2 3 214 -2 7 1262 738 200 138 6 chr3 88744167 88744348 -70855435 - B3 SINE B2 -3 213 9 7 1262 518 193 185 0 chr3 88744363 88744482 -70855301 - B1_Mur1 SINE Alu -7 142 2 7 1262 572 269 173 22 chr3 88744488 88744667 -70855116 - B3 SINE B2 -10 206 1 7 1262 565 235 0 9 chr3 88745189 88745305 -70854478 + PB1D9 SINE Alu 5 119 -1 7 1262 336 240 80 40 chr3 88745389 88745489 -70854294 - PB1D10 SINE Alu -9 108 5 7 1262 383 322 6 55 chr3 88745533 88745714 -70854069 - B3A SINE B2 -26 172 1 7 1262 541 293 53 39 chr3 88745759 88745965 -70853818 - ID_B1 SINE B4 -14 210 2 7 1262 441 282 163 61 chr3 88746012 88746276 -70853507 - B4A SINE B4 -1 291 1 7 1262 258 276 105 0 chr3 88746414 88746490 -70853293 - PB1D10 SINE Alu -29 120 37 7 1262 1082 75 7 14 chr3 88746506 88746654 -70853129 - B1_Mm SINE Alu 0 147 1 7 1262 297 227 172 25 chr3 88747007 88747129 -70852654 + L1M5 LINE L1 5568 5707 -533 7 1262 828 176 0 33 chr3 88747254 88747407 -70852376 + B1_Mur3 SINE Alu 2 149 0 7 1262 434 208 52 0 chr3 88747476 88747572 -70852211 + ID_B1 SINE B4 124 224 0 7 1262 533 259 44 0 chr3 88747759 88747894 -70851889 - B1F2 SINE Alu -2 147 7 7 1262 564 280 136 43 chr3 88747907 88748223 -70851560 - ORR1E LTR MaLR -6 353 7 7 1262 274 237 154 26 chr3 88748392 88748509 -70851274 + B1F SINE Alu 5 136 -13 7 1262 239 313 109 6 chr3 88748536 88748719 -70851064 - Tigger7 DNA MER2_type -36 2455 2255 7 1262 230 241 11 122 chr3 88748809 88748868 -70850915 - Tigger7 DNA MER2_type -2077 414 365 7 1262 1343 81 11 21 chr3 88748868 88749058 -70850725 - B2_Mm1a SINE B2 -5 188 1 7 1262 230 241 11 122 chr3 88749058 88749088 -70850695 - Tigger7 DNA MER2_type -2127 364 335 7 1262 254 198 258 62 chr3 88749097 88749194 -70850589 - PB1D9 SINE Alu 0 120 5 7 1262 195 42 0 0 chr3 88749211 88749235 -70850548 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 7 1262 388 231 33 0 chr3 88749385 88749476 -70850307 - B1F1 SINE Alu -9 140 47 7 1262 350 161 32 0 chr3 88749695 88749757 -70850026 - ID_B1 SINE B4 -8 216 153 7 1262 271 237 66 0 chr3 88749757 88749771 -70850012 - B1F SINE Alu -8 141 61 7 1262 698 225 49 0 chr3 88750019 88750161 -70849622 + B1_Mur4 SINE Alu 1 149 -1 7 1262 612 310 30 0 chr3 88750169 88750366 -70849417 + ID_B1 SINE B4 2 204 -20 7 1262 180 0 0 0 chr3 88750370 88750390 -70849393 + (CAAAC)n Simple_repeat Simple_repeat 4 23 0 7 1262 339 250 26 0 chr3 88750422 88750498 -70849285 - ID4 SINE ID -2 81 4 7 1262 329 248 83 2 chr3 88750549 88750642 -70849141 - B1F SINE Alu -17 103 3 7 1262 1349 65 16 16 chr3 88750676 88750863 -70848920 - B2_Mm2 SINE B2 -8 187 1 7 1262 463 186 18 44 chr3 88750905 88751027 -70848756 + B1_Mur1 SINE Alu 1 147 -2 7 1262 295 288 157 25 chr3 88751241 88751362 -70848421 + B4A SINE B4 3 139 -153 7 1262 216 261 62 83 chr3 88751391 88751423 -70848360 + B4A SINE B4 53 86 -206 7 1262 297 0 0 0 chr3 88751423 88751456 -70848327 + (CAA)n Simple_repeat Simple_repeat 2 34 0 7 1262 482 160 159 8 chr3 88751462 88751588 -70848195 + B1_Mus2 SINE Alu 3 147 0 7 1262 429 226 111 49 chr3 88751780 88751924 -70847859 + B3 SINE B2 64 216 0 7 1262 409 281 17 9 chr3 88752132 88752247 -70847536 - ID_B1 SINE B4 -5 219 104 7 1262 404 232 62 9 chr3 88752559 88752672 -70847111 + PB1D7 SINE Alu 1 119 -1 7 1262 1165 129 43 9 chr3 88753272 88753483 -70846300 + URR1A DNA MER1_type 9 226 0 7 1262 299 25 0 24 chr3 88754248 88754289 -70845494 + (GGA)n Simple_repeat Simple_repeat 2 41 0 7 1262 275 164 0 40 chr3 88754490 88754566 -70845217 + GA-rich Low_complexity Low_complexity 3 75 0 7 1262 336 83 0 0 chr3 88754611 88754659 -70845124 + (CCG)n Simple_repeat Simple_repeat 2 49 0 7 1262 181 323 92 0 chr3 88755851 88755916 -70843867 - MIR SINE MIR -78 130 60 7 1262 1027 106 0 0 chr3 88756172 88756313 -70843470 + B1_Mus1 SINE Alu 2 142 -6 7 1262 279 0 0 0 chr3 88756315 88756346 -70843437 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 7 1262 305 246 94 35 chr3 88756702 88756729 -70843054 + ID_B1 SINE B4 72 171 -53 7 1262 356 179 161 1 chr3 88756729 88756825 -70842958 + B1F1 SINE Alu 12 120 -29 7 1262 333 253 0 12 chr3 88756840 88756920 -70842863 + B3A SINE B2 104 182 -16 7 1262 392 0 0 20 chr3 88756964 88757013 -70842770 + (CA)n Simple_repeat Simple_repeat 2 49 0 7 1262 360 0 0 0 chr3 88757013 88757053 -70842730 + (GA)n Simple_repeat Simple_repeat 1 40 0 7 1262 518 228 76 56 chr3 88757168 88757312 -70842471 - B1F SINE Alu 0 149 3 7 1262 192 77 0 0 chr3 88757524 88757550 -70842233 + (TA)n Simple_repeat Simple_repeat 2 27 0 7 1262 212 259 89 56 chr3 88757596 88757686 -70842097 - B1_Mur2 SINE Alu -56 93 1 7 1262 526 214 109 51 chr3 88757853 88757991 -70841792 + B1F SINE Alu 4 149 0 7 1262 40 0 0 0 chr3 88758322 88758362 -70841421 + AT_rich Low_complexity Low_complexity 1 40 0 7 1262 278 335 60 13 chr3 88758377 88758528 -70841255 - RSINE1 SINE B4 -4 161 4 7 1262 616 294 58 10 chr3 88758596 88758802 -70840981 + B3 SINE B2 1 216 0 7 1262 1386 82 38 0 chr3 88759100 88759283 -70840500 + B2_Mm2 SINE B2 1 190 -5 7 1262 317 241 92 0 chr3 88759371 88759458 -70840325 - B3 SINE B2 -5 211 117 7 1262 594 250 7 7 chr3 88759729 88759866 -70839917 - B1F SINE Alu -5 144 8 7 1262 362 224 0 13 chr3 88759876 88759953 -70839830 + PB1 SINE Alu 52 127 0 7 1262 477 50 0 0 chr3 88759972 88760032 -70839751 + (TC)n Simple_repeat Simple_repeat 1 60 0 7 1262 306 0 0 0 chr3 88760032 88760065 -70839718 + (CA)n Simple_repeat Simple_repeat 1 34 0 7 1262 234 154 0 0 chr3 88760146 88760185 -70839598 + PB1D10 SINE Alu 79 117 0 7 1262 180 0 0 0 chr3 88760403 88760423 -70839360 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 7 1262 561 234 16 0 chr3 88760553 88760677 -70839106 - B3A SINE B2 -56 142 17 7 1262 243 0 0 0 chr3 88760829 88760856 -70838927 + (T)n Simple_repeat Simple_repeat 1 27 0 7 1262 996 60 105 0 chr3 88760856 88760989 -70838794 - B1_Mus2 SINE Alu 0 147 1 7 1262 751 282 107 33 chr3 88761027 88761298 -70838485 - B4 SINE B4 0 292 2 7 1262 279 277 38 182 chr3 88761300 88761393 -70838390 - PB1D10 SINE Alu -1 149 13 7 1262 308 238 0 45 chr3 88761393 88761459 -70838324 - ID_B1 SINE B4 -68 156 94 8 1262 551 188 155 67 chr3 88761625 88761819 -70837964 - B3 SINE B2 -5 211 1 8 1262 399 312 49 14 chr3 88762441 88762584 -70837199 - B1F1 SINE Alu 0 149 2 8 1262 252 0 0 0 chr3 88762585 88762613 -70837170 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 8 1262 189 0 0 0 chr3 88763556 88763577 -70836206 + (TG)n Simple_repeat Simple_repeat 2 22 0 8 1262 706 71 371 14 chr3 88763577 88763610 -70836173 - B2_Mm2 SINE B2 0 195 163 8 1262 216 0 0 0 chr3 88763610 88763634 -70836149 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 8 1262 706 71 371 14 chr3 88763634 88763743 -70836040 - B2_Mm2 SINE B2 -33 162 2 8 1262 810 135 43 0 chr3 88763774 88763915 -70835868 - B1_Mus1 SINE Alu 0 148 2 8 1262 705 161 115 0 chr3 88763980 88764110 -70835673 + B1_Mur2 SINE Alu 2 146 -3 8 1262 345 154 540 7 chr3 88764132 88764269 -70835514 + B3 SINE B2 1 210 -6 8 1262 464 235 35 49 chr3 88764372 88764539 -70835244 + B3 SINE B2 2 166 -27 8 1262 455 186 186 0 chr3 88764539 88764657 -70835126 + B1F2 SINE Alu 1 140 -9 8 1262 236 276 105 67 chr3 88764678 88764783 -70835000 + B3A SINE B2 2 110 -88 8 1262 275 91 0 0 chr3 88764859 88764903 -70834880 + B1_Mur2 SINE Alu 106 149 0 8 1262 573 248 54 0 chr3 88764966 88765095 -70834688 + B1_Mur2 SINE Alu 1 136 -13 8 1262 384 241 116 41 chr3 88765128 88765249 -70834534 + RSINE1 SINE B4 3 132 -33 8 1262 1695 31 0 0 chr3 88765361 88765553 -70834230 - B2_Mm1a SINE B2 -1 192 1 8 1262 187 292 149 8 chr3 88765888 88766009 -70833774 + MIR SINE MIR 117 254 -8 8 1262 183 184 0 0 chr3 88766235 88766273 -70833510 + CT-rich Low_complexity Low_complexity 4 41 0 8 1262 236 196 306 10 chr3 88766593 88766691 -70833092 - B1F SINE Alu 0 149 23 8 1262 378 286 99 87 chr3 88766607 88766768 -70833015 - ID_B1 SINE B4 -21 203 41 8 1262 287 194 111 120 chr3 88767026 88767094 -70832689 - ID_B1 SINE B4 0 224 156 8 1262 1522 57 0 40 chr3 88767094 88767296 -70832487 - B2_Mm2 SINE B2 0 195 2 8 1262 287 250 60 56 chr3 88767296 88767399 -70832384 - ID_B1 SINE B4 -69 155 9 8 1262 220 259 0 18 chr3 88767701 88767756 -70832027 + PB1D10 SINE Alu 23 76 -41 8 1262 243 0 0 0 chr3 88767850 88767877 -70831906 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 8 1262 236 339 44 18 chr3 88768280 88768394 -70831389 - PB1D10 SINE Alu 0 117 1 8 1262 448 270 26 0 chr3 88768550 88768665 -70831118 + B3 SINE B2 2 119 -97 8 1262 567 146 0 10 chr3 88768683 88768787 -70830996 + B2_Mm2 SINE B2 84 186 -9 8 1262 258 268 14 27 chr3 88768894 88768967 -70830816 + PB1D10 SINE Alu 3 74 -43 8 1262 685 212 22 0 chr3 88769055 88769192 -70830591 - B1_Mur3 SINE Alu -8 141 2 8 1262 332 270 0 0 chr3 88769193 88769267 -70830516 + ID_B1 SINE B4 151 224 0 8 1262 619 46 23 0 chr3 88769286 88769373 -70830410 + (GA)n Simple_repeat Simple_repeat 2 90 0 8 1262 259 329 49 0 chr3 88769381 88769463 -70830320 - PB1D7 SINE Alu -34 86 1 8 1262 668 208 32 25 chr3 88770429 88770587 -70829196 - RSINE1 SINE B4 -1 164 6 8 1262 3745 137 233 3 chr3 88770975 88771713 -70828070 - RMER13B LTR ERVK 0 908 1 8 1262 483 223 5 52 chr3 88771713 88771835 -70827948 + B1_Mur2 SINE Alu 25 137 -12 8 1262 423 0 0 0 chr3 88771835 88771882 -70827901 + (TAAA)n Simple_repeat Simple_repeat 4 50 0 8 1262 284 246 0 76 chr3 88771888 88771967 -70827816 - B3 SINE B2 -60 156 84 8 1262 674 105 0 9 chr3 88771971 88772077 -70827706 + (TG)n Simple_repeat Simple_repeat 1 105 0 8 1262 219 271 28 14 chr3 88772103 88772174 -70827609 - B4 SINE B4 -219 73 2 8 1262 261 309 25 0 chr3 88772266 88772347 -70827436 + ID SINE ID 1 83 -141 8 1262 22 0 0 0 chr3 88772347 88772369 -70827414 + AT_rich Low_complexity Low_complexity 1 22 0 8 1262 308 295 57 9 chr3 88772378 88772484 -70827299 - B1F SINE Alu -21 128 18 8 1262 564 259 36 18 chr3 88772689 88772854 -70826929 - B3A SINE B2 -26 172 5 8 1262 501 198 0 0 chr3 88772970 88773076 -70826707 + (TA)n Simple_repeat Simple_repeat 2 107 0 8 1262 671 248 94 129 chr3 88773091 88773409 -70826374 - L1_Mur3 LINE L1 -1648 4232 3935 8 1262 633 193 59 0 chr3 88773409 88773528 -70826255 - B1_Mur1 SINE Alu -19 130 5 8 1262 671 248 94 129 chr3 88773528 88773635 -70826148 - L1_Mur3 LINE L1 -1946 3934 3822 8 1262 1476 45 0 22 chr3 88773638 88773821 -70825962 - B2_Mm1a SINE B2 -13 180 2 8 1262 194 0 39 0 chr3 88773859 88773885 -70825898 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 8 1262 4943 49 15 0 chr3 88773927 88774543 -70825240 - L1Md_F3 LINE L1 0 6584 5960 8 1262 995 9 0 0 chr3 88774544 88774651 -70825132 - U6 snRNA snRNA 0 107 1 8 1262 1123 298 156 45 chr3 88774651 88775908 -70823875 - L1_Mur3 LINE L1 -2705 3175 1780 8 1262 383 299 72 14 chr3 88775930 88776141 -70823642 - L1_Mur3 LINE L1 -2237 1677 1461 8 1262 471 35 0 0 chr3 88776669 88776726 -70823057 + (GA)n Simple_repeat Simple_repeat 1 57 0 8 1262 687 264 96 5 chr3 88777068 88777266 -70822517 + B3 SINE B2 1 216 0 8 1262 396 59 0 0 chr3 88778065 88778116 -70821667 + (TG)n Simple_repeat Simple_repeat 2 52 0 8 1262 288 250 24 59 chr3 88778165 88778250 -70821533 - RSINE1 SINE B4 -36 129 48 8 1262 554 256 84 58 chr3 88778528 88778719 -70821064 + B3A SINE B2 1 196 -2 8 1262 1680 183 78 51 chr3 88779038 88779412 -70820371 - ORR1C2 LTR MaLR 0 384 1 8 1262 294 281 85 27 chr3 88779510 88779669 -70820114 + B3A SINE B2 3 176 -19 8 1262 501 97 0 0 chr3 88779731 88779803 -70819980 + (CA)n Simple_repeat Simple_repeat 2 73 0 8 1262 366 277 139 26 chr3 88780008 88780123 -70819660 + RSINE1 SINE B4 9 136 -29 8 1262 349 317 133 0 chr3 88780405 88780525 -70819258 - B4A SINE B4 -152 140 5 8 1262 1202 27 0 39 chr3 88780555 88780708 -70819075 + B1_Mm SINE Alu 1 147 0 8 1262 241 388 30 10 chr3 88780723 88780822 -70818961 - PB1D7 SINE Alu -19 101 1 8 1262 737 156 39 0 chr3 88780874 88781002 -70818781 + B1_Mus1 SINE Alu 2 134 -14 8 1262 186 43 0 0 chr3 88781041 88781064 -70818719 + (CAAA)n Simple_repeat Simple_repeat 1 23 0 8 1262 345 100 0 0 chr3 88781113 88781163 -70818620 + (TCTA)n Simple_repeat Simple_repeat 4 53 0 8 1262 1241 70 0 0 chr3 88781163 88781321 -70818462 - B2_Mm2 SINE B2 -35 160 3 8 1262 11813 71 31 19 chr3 88781467 88783869 -70815914 - L1VL2 LINE L1 -902 2713 284 8 1262 414 0 0 0 chr3 88783881 88783927 -70815856 + (TG)n Simple_repeat Simple_repeat 1 46 0 8 1262 407 342 0 17 chr3 88784004 88784123 -70815660 + RSINE1 SINE B4 16 132 -33 8 1262 287 303 67 0 chr3 88784306 88784395 -70815388 + PB1D7 SINE Alu 26 120 0 8 1262 404 307 21 28 chr3 88784497 88784638 -70815145 - RSINE1 SINE B4 0 165 26 8 1262 477 331 21 0 chr3 88784679 88784821 -70814962 - B1F SINE Alu 0 149 5 8 1262 716 226 75 0 chr3 88784855 88785001 -70814782 + B3A SINE B2 1 157 -41 8 1262 201 39 0 0 chr3 88785016 88785042 -70814741 + (CA)n Simple_repeat Simple_repeat 2 27 0 8 1262 29 47 0 0 chr3 88789795 88789838 -70809945 + AT_rich Low_complexity Low_complexity 1 43 0 8 1262 220 27 54 0 chr3 88790645 88790682 -70809101 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 8 1262 1000 87 14 7 chr3 88790682 88790821 -70808962 - B1_Mur4 SINE Alu -10 140 1 8 1262 449 203 108 34 chr3 88790896 88791044 -70808739 + B3 SINE B2 58 216 0 8 1262 681 201 7 59 chr3 88791056 88791209 -70808574 - B1_Mur2 SINE Alu 0 149 5 8 1262 479 215 127 40 chr3 88791225 88791351 -70808432 - B1_Mur2 SINE Alu 0 149 13 8 1262 489 295 0 51 chr3 88791665 88791783 -70808000 + B1F2 SINE Alu 6 117 -32 8 1262 272 274 21 188 chr3 88791670 88791814 -70807969 + MT2B LTR ERVL 175 294 -307 8 1262 186 143 0 0 chr3 88792021 88792056 -70807727 + (TTTA)n Simple_repeat Simple_repeat 3 37 0 8 1262 734 256 39 20 chr3 88792765 88792968 -70806815 + B3 SINE B2 4 210 -6 8 1262 930 147 0 68 chr3 88792996 88793157 -70806626 + B1_Mur4 SINE Alu 1 150 0 8 1262 992 211 26 0 chr3 88793802 88793996 -70805787 + B3 SINE B2 2 200 -16 8 1262 237 278 167 0 chr3 88794025 88794115 -70805668 + ID_B1 SINE B4 113 217 -7 8 1262 664 229 19 50 chr3 88794182 88794342 -70805441 + B4A SINE B4 78 232 -60 8 1262 476 262 28 18 chr3 88794342 88794451 -70805332 + RSINE1 SINE B4 2 111 -54 8 1262 363 243 47 28 chr3 88794465 88794571 -70805212 - RSINE1 SINE B4 -10 155 48 8 1262 257 286 78 48 chr3 88794638 88794741 -70805042 + PB1D10 SINE Alu 1 106 -11 8 1262 233 353 47 70 chr3 88794741 88794757 -70805026 + ID_B1 SINE B4 106 191 -33 8 1262 1020 175 44 0 chr3 88794822 88795005 -70804778 + B2_Mm1t SINE B2 1 191 -2 8 1262 660 221 30 0 chr3 88795028 88795159 -70804624 + B1_Mur1 SINE Alu 10 144 -5 8 1262 228 200 15 15 chr3 88795211 88795277 -70804506 + (TTTG)n Simple_repeat Simple_repeat 4 69 0 8 1262 237 83 0 0 chr3 88795456 88795492 -70804291 + (T)n Simple_repeat Simple_repeat 1 36 0 8 1262 1103 56 0 0 chr3 88795492 88795635 -70804148 - B1_Mus1 SINE Alu 0 148 6 8 1262 419 312 89 23 chr3 88795640 88795848 -70803935 + L1MC3 LINE L1 6905 7134 -651 8 1262 909 218 18 28 chr3 88795848 88796065 -70803718 - B3 SINE B2 0 216 2 8 1262 419 276 58 58 chr3 88796065 88796140 -70803643 + L1MC3 LINE L1 7135 7180 -605 8 1262 456 214 44 18 chr3 88796217 88796331 -70803452 - B2_Mm2 SINE B2 -78 117 1 9 1262 770 226 109 10 chr3 88796355 88796547 -70803236 - B3 SINE B2 -4 212 2 9 1262 702 203 23 0 chr3 88796562 88796690 -70803093 - B1_Mur4 SINE Alu -6 144 14 9 1262 378 286 62 93 chr3 88796690 88796721 -70803062 - B4 SINE B4 -69 220 67 9 1262 478 211 29 9 chr3 88796739 88796844 -70802939 - PB1D10 SINE Alu -1 116 10 9 1262 236 170 0 19 chr3 88797104 88797158 -70802625 + CT-rich Low_complexity Low_complexity 3 55 0 9 1262 270 0 0 0 chr3 88798293 88798323 -70801460 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 9 1262 436 221 191 17 chr3 88798323 88798438 -70801345 - B1_Mur2 SINE Alu -11 138 4 9 1262 31 0 0 0 chr3 88798660 88798691 -70801092 + AT_rich Low_complexity Low_complexity 1 31 0 9 1262 469 160 164 112 chr3 88798760 88798798 -70800985 + B1_Mur3 SINE Alu 5 37 -112 9 1262 1459 70 16 0 chr3 88798798 88798983 -70800800 + B2_Mm2 SINE B2 3 190 -5 9 1262 469 160 164 112 chr3 88798983 88799078 -70800705 + B1_Mur3 SINE Alu 38 145 -4 9 1262 1201 130 0 30 chr3 88799532 88799554 -70800229 - B2_Mm2 SINE B2 -1 194 175 9 1262 6511 95 20 0 chr3 88799554 88800479 -70799304 - Lx3_Mus LINE L1 -5 7004 6061 9 1262 1201 130 0 30 chr3 88800479 88800654 -70799129 - B2_Mm2 SINE B2 -21 174 3 9 1262 434 240 10 40 chr3 88801004 88801104 -70798679 + B1_Mus2 SINE Alu 51 147 0 9 1262 6078 7 0 0 chr3 88801355 88802029 -70797754 - L1Md_T LINE L1 0 6582 5909 9 1262 495 0 0 0 chr3 88802109 88802164 -70797619 + (TG)n Simple_repeat Simple_repeat 2 56 0 9 1262 287 276 0 0 chr3 88805957 88806015 -70793768 + B3A SINE B2 1 58 -140 9 1262 300 266 47 0 chr3 88806181 88806245 -70793538 + ID_B1 SINE B4 94 160 -64 9 1262 240 282 115 0 chr3 88806245 88806259 -70793524 + PB1D9 SINE Alu 13 99 -21 9 1262 373 214 106 12 chr3 88806306 88806391 -70793392 + PB1D7 SINE Alu 25 117 -3 9 1262 336 263 0 50 chr3 88806408 88806488 -70793295 + ID SINE ID 2 77 -147 9 1262 624 288 150 16 chr3 88806901 88807155 -70792628 + B4A SINE B4 5 292 0 9 1262 414 0 0 0 chr3 88807411 88807457 -70792326 + (TTATA)n Simple_repeat Simple_repeat 2 47 0 9 1262 581 258 23 8 chr3 88807459 88807592 -70792191 - RSINE1 SINE B4 -19 146 12 9 1262 297 319 35 21 chr3 88807666 88807807 -70791976 - B1F SINE Alu -3 146 4 9 1262 852 162 0 29 chr3 88808004 88808144 -70791639 - B1_Mur4 SINE Alu -13 137 2 9 1262 316 265 14 0 chr3 88808151 88808229 -70791554 + B1F1 SINE Alu 29 113 -14 9 1262 189 0 0 0 chr3 88808322 88808343 -70791440 + (GGGA)n Simple_repeat Simple_repeat 4 24 0 9 1262 267 351 0 0 chr3 88808549 88808626 -70791157 + B1F SINE Alu 13 89 -60 9 1262 266 235 192 12 chr3 88808680 88808734 -70791049 + PB1D10 SINE Alu 6 101 -19 9 1262 266 88 0 0 chr3 88808734 88808768 -70791015 + ID_B1 SINE B4 174 207 -17 9 1262 380 227 28 85 chr3 88808920 88809026 -70790757 + PB1D9 SINE Alu 21 120 0 9 1262 647 175 147 23 chr3 88809249 88809378 -70790405 - B1_Mur4 SINE Alu -5 145 1 9 1262 230 222 0 18 chr3 88809408 88809463 -70790320 + MLT2B3 LTR ERVL 501 554 0 9 1262 281 333 32 26 chr3 88809514 88809668 -70790115 + RSINE1 SINE B4 3 157 -8 9 1262 361 257 119 0 chr3 88809746 88809855 -70789928 - MTE-int LTR MaLR -7 1573 1452 9 1262 292 276 43 58 chr3 88810072 88810177 -70789606 + PB1D7 SINE Alu 14 122 -5 9 1262 1042 78 43 0 chr3 88810181 88810322 -70789461 + B1_Mus2 SINE Alu 1 147 0 9 1262 224 222 0 0 chr3 88810322 88810367 -70789416 + A-rich Low_complexity Low_complexity 4 48 0 9 1262 258 325 0 12 chr3 88810380 88810461 -70789322 + BC1_Mm scRNA scRNA 9 88 -64 9 1262 359 253 22 22 chr3 88810704 88810793 -70788990 + B3A SINE B2 107 195 -3 9 1262 492 293 0 49 chr3 88810853 88810975 -70788808 + B1_Mur1 SINE Alu 26 141 -8 9 1262 341 320 74 7 chr3 88811871 88812019 -70787764 - RSINE1 SINE B4 -6 159 2 9 1262 546 91 0 0 chr3 88812221 88812298 -70787485 + (CATA)n Simple_repeat Simple_repeat 4 80 0 9 1262 467 259 6 37 chr3 88812634 88812798 -70786985 - L1MB3 LINE L1 -169 6014 5856 9 1262 563 233 37 15 chr3 88813094 88813229 -70786554 + B1F2 SINE Alu 1 138 -11 9 1262 1848 160 216 29 chr3 88813249 88813621 -70786162 + RLTR11A LTR ERVK 1 464 -64 9 1262 1222 61 0 0 chr3 88813621 88813769 -70786014 - B1_Mus1 SINE Alu 0 148 1 9 1262 1848 160 216 29 chr3 88813769 88813841 -70785942 + RLTR11A LTR ERVK 465 527 -1 9 1262 772 213 103 11 chr3 88813859 88814044 -70785739 - B3 SINE B2 -10 206 5 9 1262 493 277 80 0 chr3 88814108 88814220 -70785563 - RSINE1 SINE B4 -43 122 2 9 1262 547 233 85 8 chr3 88814309 88814439 -70785344 - B1_Mur1 SINE Alu -7 142 3 9 1262 652 231 112 5 chr3 88814498 88814685 -70785098 - B3 SINE B2 -9 207 1 9 1262 886 290 14 19 chr3 88814688 88814699 -70785084 - B3 SINE B2 -6 210 200 9 1262 204 67 0 0 chr3 88814699 88814729 -70785054 + (TTG)n Simple_repeat Simple_repeat 2 31 0 9 1262 886 290 14 19 chr3 88814729 88814928 -70784855 - B3 SINE B2 -17 199 1 9 1262 399 21 0 0 chr3 88815001 88815049 -70784734 + (TG)n Simple_repeat Simple_repeat 2 49 0 9 1262 573 279 24 47 chr3 88815056 88815225 -70784558 - B3 SINE B2 -51 165 1 9 1262 310 331 68 12 chr3 88815251 88815413 -70784370 + L1M5 LINE L1 5106 5276 -870 9 1262 545 323 16 5 chr3 88815478 88815671 -70784112 - B3A SINE B2 0 198 4 9 1262 622 250 94 18 chr3 88815864 88816035 -70783748 + ID_B1 SINE B4 12 195 -29 9 1262 288 254 0 0 chr3 88816090 88816153 -70783630 + ID4 SINE ID 8 70 -13 9 1262 266 188 40 68 chr3 88816153 88816164 -70783619 + tRNA-Ala-GCY_ tRNA tRNA 2 73 -2 9 1262 261 330 18 70 chr3 88816477 88816591 -70783192 - B1F SINE Alu 0 149 42 9 1262 203 289 33 0 chr3 88816596 88816686 -70783097 + T-rich Low_complexity Low_complexity 2 94 0 9 1262 226 265 0 0 chr3 88816693 88816742 -70783041 - tRNA-Ala-GCG tRNA tRNA -26 49 1 9 1262 468 91 0 0 chr3 88816874 88816940 -70782843 + (TA)n Simple_repeat Simple_repeat 1 66 0 9 1262 198 0 0 0 chr3 88816940 88816962 -70782821 + (CA)n Simple_repeat Simple_repeat 1 22 0 9 1262 243 162 118 26 chr3 88816962 88817038 -70782745 - B2_Mm2 SINE B2 -111 84 2 9 1262 1284 75 46 0 chr3 88817052 88817226 -70782557 - B2_Mm2 SINE B2 -13 182 1 9 1262 279 230 195 0 chr3 88817322 88817435 -70782348 + L1MC LINE L1 3798 3932 -2214 9 1262 406 239 101 0 chr3 88817571 88817680 -70782103 + PB1D7 SINE Alu 1 120 0 9 1262 501 232 103 108 chr3 88817721 88817953 -70781830 + B4A SINE B4 51 281 -11 9 1262 407 19 19 0 chr3 88817971 88818023 -70781760 + (CA)n Simple_repeat Simple_repeat 2 54 0 9 1262 306 295 35 9 chr3 88818057 88818170 -70781613 + L1M2 LINE L1 4516 4631 -1512 9 1262 439 294 8 70 chr3 88818174 88818283 -70781500 + PB1D7 SINE Alu 1 109 -11 9 1262 531 0 0 0 chr3 88818283 88818342 -70781441 + (TGGA)n Simple_repeat Simple_repeat 4 62 0 9 1262 439 294 8 70 chr3 88818342 88818360 -70781423 + PB1D7 SINE Alu 110 120 0 9 1262 281 243 27 41 chr3 88818878 88818943 -70780840 - RSINE1 SINE B4 -91 74 10 9 1262 1213 154 259 23 chr3 88818943 88819209 -70780574 + ORR1A4 LTR MaLR 1 329 0 9 1262 507 232 57 38 chr3 88819265 88819422 -70780361 - Lx9 LINE L1 -534 7110 6951 9 1262 1446 158 9 165 chr3 88819422 88819714 -70780069 + RMER19B LTR ERVK 1 243 -659 9 1262 1362 65 49 0 chr3 88819714 88819898 -70779885 + B2_Mm2 SINE B2 2 194 -1 9 1262 1446 254 174 60 chr3 88819898 88820111 -70779672 + RMER19B LTR ERVK 244 595 -16 9 1262 1174 202 85 20 chr3 88820121 88820414 -70779369 - Lx9 LINE L1 -690 6954 6643 9 1262 760 145 53 86 chr3 88820632 88820783 -70779000 - B1_Mur4 SINE Alu 0 150 5 9 1262 1244 34 0 0 chr3 88821154 88821301 -70778482 - B1_Mus2 SINE Alu 0 147 1 9 1262 275 297 79 82 chr3 88821379 88821554 -70778229 - L1M2 LINE L1 -2388 3492 3336 9 1262 751 162 35 14 chr3 88821554 88821698 -70778085 - B1_Mur2 SINE Alu -1 148 2 9 1262 679 297 79 82 chr3 88821698 88822010 -70777773 - L1M2 LINE L1 -2789 3354 3007 9 1262 692 286 18 68 chr3 88822010 88822231 -70777552 - B3 SINE B2 -6 210 1 9 1262 679 298 73 38 chr3 88822231 88822612 -70777171 - L1M2 LINE L1 -3103 3040 2650 9 1262 557 202 246 16 chr3 88822623 88822806 -70776977 + URR1B DNA MER1_type 1 225 0 9 1262 286 309 117 19 chr3 88822819 88823126 -70776657 - L1_Mur3 LINE L1 -3291 2589 2253 9 1262 226 346 26 0 chr3 88823201 88823279 -70776504 - B3A SINE B2 -26 172 93 9 1262 2422 128 64 42 chr3 88823473 88823929 -70775854 - RMER4A LTR ERVK 0 466 1 9 1262 745 237 109 43 chr3 88824014 88824270 -70775513 - B4A SINE B4 -16 276 4 9 1262 294 188 0 20 chr3 88824296 88824345 -70775438 - B3A SINE B2 -70 128 81 9 1262 1283 73 90 0 chr3 88824383 88824561 -70775222 - B2_Mm2 SINE B2 0 195 2 9 1262 298 298 35 88 chr3 88824909 88825023 -70774760 - PB1D7 SINE Alu -3 117 7 9 1262 543 214 26 18 chr3 88825062 88825176 -70774607 - B1F2 SINE Alu -23 126 12 9 1262 677 285 100 37 chr3 88825251 88825521 -70774262 - B4 SINE B4 -4 288 2 9 1262 370 225 22 11 chr3 88825702 88825792 -70773991 - ID_B1 SINE B4 -5 219 129 9 1262 499 129 23 23 chr3 88825944 88826031 -70773752 + PB1D9 SINE Alu 34 120 0 9 1262 277 264 13 40 chr3 88826110 88826185 -70773598 - PB1D10 SINE Alu -2 115 43 9 1262 310 314 37 82 chr3 88826333 88826406 -70773377 - ID_B1 SINE B4 -19 205 135 9 1262 878 148 237 0 chr3 88826406 88826575 -70773208 - B3 SINE B2 -6 210 2 9 1262 310 314 37 82 chr3 88826575 88826636 -70773147 - ID_B1 SINE B4 -90 134 77 9 1262 326 172 15 45 chr3 88826636 88826703 -70773080 - B1F1 SINE Alu 0 149 85 1 1262 314 143 33 25 chr3 88826791 88826913 -70772870 + (TA)n Simple_repeat Simple_repeat 1 123 0 1 1262 427 106 324 63 chr3 88827187 88827298 -70772485 - B2_Mm2 SINE B2 -9 186 47 1 1262 849 137 0 15 chr3 88827362 88827495 -70772288 - B2_Mm2 SINE B2 -63 132 2 1 1262 234 188 62 12 chr3 88827528 88827609 -70772174 + (TA)n Simple_repeat Simple_repeat 1 85 0 1 1262 255 229 105 158 chr3 88827762 88827876 -70771907 + PB1D10 SINE Alu 3 110 -7 1 1262 209 33 0 32 chr3 88828884 88828915 -70770868 + (TTAA)n Simple_repeat Simple_repeat 3 32 0 1 1262 235 120 80 0 chr3 88829090 88829140 -70770643 - RCHARR1 DNA MER1_type -86 888 835 1 1262 739 217 0 35 chr3 88829151 88829294 -70770489 + B1_Mus1 SINE Alu 3 140 -8 1 1262 361 243 71 35 chr3 88829314 88829456 -70770327 + B3 SINE B2 9 210 -6 1 1262 21 0 0 0 chr3 88829650 88829671 -70770112 + AT_rich Low_complexity Low_complexity 1 21 0 1 1262 21 0 0 0 chr3 88829716 88829737 -70770046 + AT_rich Low_complexity Low_complexity 1 21 0 1 1262 197 33 0 32 chr3 88829873 88829904 -70769879 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 1 1262 1119 74 0 7 chr3 88829909 88830058 -70769725 - B1_Mus1 SINE Alu 0 148 1 1 1262 364 319 35 0 chr3 88830144 88830260 -70769523 - RSINE1 SINE B4 -40 125 6 1 1262 634 261 16 49 chr3 88830547 88830732 -70769051 + ID_B1 SINE B4 6 184 -40 1 1262 1057 128 0 23 chr3 88830808 88830984 -70768799 - B2_Mm2 SINE B2 -18 177 6 1 1262 762 164 71 7 chr3 88831142 88831283 -70768500 + B1_Mur4 SINE Alu 1 150 0 1 1262 298 359 127 8 chr3 88831283 88831401 -70768382 - ID_B1 SINE B4 -13 211 80 1 1262 1040 239 73 28 chr3 88831478 88831766 -70768017 - MTE2a LTR MaLR -1 378 78 1 1262 387 295 107 27 chr3 88831817 88831967 -70767816 - MTE-int LTR MaLR 0 1580 1419 1 1262 1179 68 0 7 chr3 88831974 88832123 -70767660 + B1_Mus1 SINE Alu 1 148 0 1 1262 26 0 0 0 chr3 88832128 88832154 -70767629 + AT_rich Low_complexity Low_complexity 1 26 0 1 1262 524 267 26 0 chr3 88832164 88832280 -70767503 + PB1D9 SINE Alu 1 119 -1 1 1262 1822 305 102 119 chr3 88832279 88833132 -70766651 - MTE-int LTR MaLR -182 1398 583 1 1262 440 333 0 57 chr3 88833132 88833307 -70766476 - RSINE1 SINE B4 0 165 1 1 1262 1378 307 103 119 chr3 88833307 88833868 -70765915 - MTE-int LTR MaLR -998 582 7 1 1262 1042 169 124 0 chr3 88833991 88834192 -70765591 + URR1A DNA MER1_type 1 226 0 1 1262 508 322 58 15 chr3 88834376 88834565 -70765218 - B3 SINE B2 0 198 9 1 1262 426 246 9 18 chr3 88834605 88834717 -70765066 - PB1D9 SINE Alu -5 115 5 1 1262 1132 107 60 28 chr3 88834956 88835138 -70764645 - B2_Mm2 SINE B2 -6 189 2 1 1262 261 0 0 0 chr3 88835608 88835637 -70764146 + (A)n Simple_repeat Simple_repeat 1 29 0 1 1262 369 221 202 0 chr3 88835658 88835762 -70764021 + B1_Mus2 SINE Alu 3 127 -20 1 1262 574 205 0 9 chr3 88835852 88835965 -70763818 + PB1D9 SINE Alu 9 120 0 1 1262 283 188 0 83 chr3 88836067 88836148 -70763635 - B1_Mur4 SINE Alu -52 97 23 1 1262 370 340 101 19 chr3 88836152 88836311 -70763472 - B3A SINE B2 -21 177 6 1 1262 22 0 0 0 chr3 88836465 88836487 -70763296 + AT_rich Low_complexity Low_complexity 1 22 0 1 1262 394 354 20 20 chr3 88836487 88836634 -70763149 - RSINE1 SINE B4 -4 161 15 1 1262 1348 97 5 5 chr3 88836703 88836890 -70762893 - B2_Mm1a SINE B2 -6 187 1 1 1262 451 217 309 0 chr3 88836890 88837042 -70762741 - B3 SINE B2 -16 200 2 1 1262 1163 62 0 24 chr3 88837533 88837697 -70762086 + B2_Mm1t SINE B2 1 160 -33 1 1262 444 37 0 0 chr3 88837697 88837751 -70762032 + (TAAA)n Simple_repeat Simple_repeat 3 56 0 1 1262 324 205 83 12 chr3 88837974 88838058 -70761725 + PB1D9 SINE Alu 5 94 -26 1 1262 668 188 48 18 chr3 88838245 88838413 -70761370 + RLTR15 LTR ERVK 1 173 -186 1 1262 232 231 19 0 chr3 88838721 88838773 -70761010 + ID_B1 SINE B4 99 151 -73 1 1262 678 208 34 20 chr3 88839685 88839832 -70759951 - B1_Mur4 SINE Alu -1 149 1 1 1262 191 98 24 0 chr3 88840066 88840102 -70759681 + (TTTG)n Simple_repeat Simple_repeat 3 39 0 1 1262 1266 34 0 0 chr3 88840102 88840249 -70759534 - B1_Mm SINE Alu 0 147 1 1 1262 470 315 0 14 chr3 88840427 88840572 -70759211 + B1F1 SINE Alu 3 145 -4 1 1262 204 67 0 0 chr3 88840801 88840831 -70758952 + (TG)n Simple_repeat Simple_repeat 2 31 0 1 1262 399 227 26 60 chr3 88840861 88840978 -70758805 - B3A SINE B2 -85 113 1 1 1262 332 248 56 56 chr3 88841029 88841136 -70758647 - B1F1 SINE Alu 0 149 43 1 1262 606 186 155 0 chr3 88841160 88841289 -70758494 - B1_Mur3 SINE Alu 0 149 1 1 1262 303 93 0 0 chr3 88841293 88841336 -70758447 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 1 1262 285 29 0 0 chr3 88841344 88841378 -70758405 + (TG)n Simple_repeat Simple_repeat 1 34 0 1 1262 1003 136 0 7 chr3 88841562 88841710 -70758073 + B1_Mus2 SINE Alu 1 147 0 1 1262 21 0 0 0 chr3 88841821 88841842 -70757941 + AT_rich Low_complexity Low_complexity 1 21 0 1 1262 1391 66 22 0 chr3 88841999 88842180 -70757603 - B2_Mm1t SINE B2 -7 186 2 1 1262 775 153 51 7 chr3 88842214 88842352 -70757431 + B1_Mus1 SINE Alu 5 148 0 1 1262 617 184 268 0 chr3 88842420 88842588 -70757195 - B3 SINE B2 -3 213 1 1 1262 436 195 0 71 chr3 88843185 88843312 -70756471 - RMER1C Other Other -10 1332 1215 1 1262 783 203 14 0 chr3 88843426 88843569 -70756214 - B1_Mur3 SINE Alu 0 149 5 1 1262 1658 31 0 0 chr3 88843583 88843774 -70756009 - B2_Mm1a SINE B2 -1 192 2 1 1262 367 250 12 0 chr3 88843817 88843901 -70755882 - PB1D9 SINE Alu -25 95 11 1 1262 451 237 45 22 chr3 88844005 88844139 -70755644 + RSINE1 SINE B4 2 138 -27 1 1262 213 39 0 0 chr3 88844140 88844166 -70755617 + (TG)n Simple_repeat Simple_repeat 2 27 0 1 1262 504 211 45 18 chr3 88844247 88844358 -70755425 - PB1D9 SINE Alu -3 117 4 1 1262 1329 81 21 5 chr3 88844370 88844556 -70755227 - B2_Mm2 SINE B2 -6 189 1 1 1262 692 204 8 0 chr3 88844792 88844924 -70754859 + B1_Mur4 SINE Alu 3 135 -15 1 1262 549 0 0 0 chr3 88844991 88845052 -70754731 + (TG)n Simple_repeat Simple_repeat 2 62 0 1 1262 575 267 92 12 chr3 88845154 88845317 -70754466 - B3A SINE B2 -22 176 1 1 1262 498 310 60 60 chr3 88845365 88845472 -70754311 + B4A SINE B4 8 115 -177 1 1262 297 109 0 0 chr3 88845472 88845518 -70754265 + (TGG)n Simple_repeat Simple_repeat 3 48 0 1 1262 498 310 60 60 chr3 88845518 88845695 -70754088 + B4A SINE B4 116 291 -1 1 1262 368 287 38 23 chr3 88845729 88845861 -70753922 + B1F2 SINE Alu 5 138 -11 1 1262 802 276 5 5 chr3 88846143 88846336 -70753447 + B3 SINE B2 3 195 -21 1 1262 388 331 12 37 chr3 88846351 88846364 -70753419 + B4A SINE B4 74 169 -123 1 1262 801 174 28 0 chr3 88846364 88846508 -70753275 + B1_Mur3 SINE Alu 2 149 0 1 1262 1119 59 0 0 chr3 88846660 88846795 -70752988 + B1_Mus2 SINE Alu 1 135 -12 1 1262 539 40 0 13 chr3 88846795 88846870 -70752913 + (GAAA)n Simple_repeat Simple_repeat 4 77 0 1 1262 30 27 0 0 chr3 88846952 88846989 -70752794 + AT_rich Low_complexity Low_complexity 1 37 0 1 1262 239 236 18 0 chr3 88847907 88847962 -70751821 + B2_Mm2 SINE B2 6 61 -134 1 1262 1170 54 0 39 chr3 88848035 88848188 -70751595 - B1_Mus2 SINE Alu 0 147 1 1 1262 344 192 0 14 chr3 88848381 88848455 -70751328 + B1_Mur1 SINE Alu 76 148 -1 1 1262 390 341 8 23 chr3 88848467 88848596 -70751187 - B1F SINE Alu -22 127 1 1 1262 363 267 0 43 chr3 88848757 88848851 -70750932 + PB1D10 SINE Alu 15 104 -13 1 1262 219 69 0 0 chr3 88848852 88848881 -70750902 + (TTCA)n Simple_repeat Simple_repeat 1 29 0 1 1262 414 227 82 25 chr3 88848909 88849031 -70750752 + B3 SINE B2 88 216 0 1 1262 370 235 157 0 chr3 88849043 88849145 -70750638 + PB1D9 SINE Alu 3 120 0 1 1262 362 285 54 81 chr3 88849160 88849309 -70750474 + RSINE1 SINE B4 21 165 0 1 1262 449 288 0 22 chr3 88849362 88849497 -70750286 - B1_Mur2 SINE Alu 0 149 18 1 1262 236 280 13 39 chr3 88849796 88849874 -70749909 - ID_B1 SINE B4 0 224 149 1 1262 477 293 73 7 chr3 88849897 88850048 -70749735 - RSINE1 SINE B4 -1 164 4 1 1262 496 280 0 0 chr3 88850164 88850282 -70749501 + RSINE1 SINE B4 8 125 -40 1 1262 226 224 0 0 chr3 88850583 88850632 -70749151 + ID_B1 SINE B4 107 155 -69 1 1262 518 241 271 0 chr3 88850633 88850803 -70748980 + B3 SINE B2 1 216 0 1 1262 815 191 203 22 chr3 88850971 88851153 -70748630 + B3 SINE B2 1 215 -1 1 1262 674 218 211 6 chr3 88851180 88851351 -70748432 + B3 SINE B2 5 210 -6 1 1262 1455 246 109 78 chr3 88851552 88852039 -70747744 - RMER1A Other Other -381 685 1 1 1262 965 275 96 78 chr3 88852041 88852559 -70747224 - RMER1B Other Other -530 536 1 1 1262 273 220 34 0 chr3 88853323 88853382 -70746401 + PB1D7 SINE Alu 50 110 -10 1 1262 1849 192 11 97 chr3 88853465 88853814 -70745969 - MTC LTR MaLR -2 419 80 1 1262 480 35 0 0 chr3 88853814 88853872 -70745911 + (TTTTC)n Simple_repeat Simple_repeat 3 60 0 1 1262 1348 79 11 0 chr3 88853872 88854049 -70745734 - B2_Mm1t SINE B2 -14 179 1 1 1262 1849 192 11 97 chr3 88854049 88854076 -70745707 - MTC LTR MaLR -342 79 79 1 1262 637 92 0 0 chr3 88854076 88854185 -70745598 - L1Md_F2 LINE L1 0 6582 6474 1 1262 1849 192 11 97 chr3 88854185 88854262 -70745521 - MTC LTR MaLR -342 79 4 1 1262 513 221 112 0 chr3 88854302 88854469 -70745314 + B3 SINE B2 5 198 0 1 1262 297 294 110 8 chr3 88854519 88854646 -70745137 + B3 SINE B2 72 211 -5 1 1262 221 339 31 0 chr3 88854698 88854763 -70745020 + PB1D10 SINE Alu 6 72 -45 1 1262 294 318 107 98 chr3 88854826 88854898 -70744885 + B4 SINE B4 21 169 -123 1 1262 513 284 16 0 chr3 88854898 88855025 -70744758 + B1_Mur2 SINE Alu 8 136 -13 1 1262 294 318 107 98 chr3 88855025 88855070 -70744713 + B4 SINE B4 170 266 -26 1 1262 292 324 0 51 chr3 88855075 88855153 -70744630 + B1F1 SINE Alu 4 77 -72 1 1262 571 301 19 37 chr3 88855168 88855382 -70744401 + ID_B1 SINE B4 1 210 -14 1 1262 248 226 48 0 chr3 88855413 88855475 -70744308 + PB1D9 SINE Alu 43 107 -13 1 1262 363 186 80 23 chr3 88855486 88855574 -70744209 - PB1D9 SINE Alu -10 110 18 1 1262 1251 54 0 0 chr3 88855607 88855754 -70744029 + B1_Mus1 SINE Alu 1 147 -1 1 1262 211 189 321 0 chr3 88856204 88856257 -70743526 - B1_Mur2 SINE Alu -7 142 73 1 1262 265 260 78 20 chr3 88856424 88856526 -70743257 - PB1D10 SINE Alu 0 117 10 1 1262 522 0 0 0 chr3 88857141 88857199 -70742584 + (TG)n Simple_repeat Simple_repeat 2 59 0 1 1262 1139 62 0 40 chr3 88857241 88857393 -70742390 + B1_Mus2 SINE Alu 2 147 0 1 1262 472 293 36 0 chr3 88857444 88857584 -70742199 + B3 SINE B2 70 214 -2 1 1262 517 211 17 9 chr3 88857586 88857701 -70742082 + B1_Mur1 SINE Alu 29 144 -5 1 1262 22 0 0 0 chr3 88857708 88857730 -70742053 + AT_rich Low_complexity Low_complexity 1 22 0 1 1262 1158 68 7 0 chr3 88857835 88857982 -70741801 - B1_Mus1 SINE Alu 0 148 1 1 1262 258 250 56 0 chr3 88858083 88858155 -70741628 - PB1D7 SINE Alu -20 100 25 1 1262 773 179 35 0 chr3 88858472 88858617 -70741166 - B1_Mur4 SINE Alu 0 150 1 1 1262 280 85 68 0 chr3 88858928 88858987 -70740796 + (TCTG)n Simple_repeat Simple_repeat 2 64 0 1 1262 242 222 143 0 chr3 88858987 88859050 -70740733 - B1_Mur2 SINE Alu 0 149 78 1 1262 596 208 8 15 chr3 88859076 88859208 -70740575 - B1_Mur4 SINE Alu 0 150 20 1 1262 239 297 18 82 chr3 88859252 88859362 -70740421 + PB1D10 SINE Alu 4 106 -11 1 1262 653 234 87 6 chr3 88859493 88859665 -70740118 + B3 SINE B2 3 188 -28 1 1262 248 242 0 43 chr3 88859694 88859728 -70740055 + polypurine Low_complexity Low_complexity 2 35 0 1 1262 1200 35 0 0 chr3 88859728 88859869 -70739914 + B1_Mus2 SINE Alu 1 141 -6 1 1262 248 242 0 43 chr3 88859869 88859903 -70739880 + polypurine Low_complexity Low_complexity 36 67 0 1 1262 1261 64 127 0 chr3 88860155 88860328 -70739455 - B2_Mm2 SINE B2 0 195 1 1 1262 204 217 0 0 chr3 88860376 88860422 -70739361 + (CATATA)n Simple_repeat Simple_repeat 2 47 0 1 1262 466 302 14 0 chr3 88860581 88860720 -70739063 - RSINE1 SINE B4 -22 143 3 1 1262 952 82 90 0 chr3 88861444 88861578 -70738205 + B1_Mus1 SINE Alu 1 146 -2 1 1262 261 304 0 0 chr3 88861707 88861763 -70738020 + B1F1 SINE Alu 1 56 -93 1 1262 677 12 12 0 chr3 88861813 88861895 -70737888 + (TC)n Simple_repeat Simple_repeat 1 83 0 1 1262 452 261 99 0 chr3 88862016 88862127 -70737656 - B3A SINE B2 -60 138 17 1 1262 419 201 65 53 chr3 88862658 88862831 -70736952 - B3 SINE B2 -1 197 1 1 1262 371 279 135 0 chr3 88862871 88862982 -70736801 - B3A SINE B2 -25 173 48 1 1262 1093 82 0 33 chr3 88862996 88863147 -70736636 - B1_Mus2 SINE Alu 0 147 2 1 1262 343 233 254 17 chr3 88863373 88863491 -70736292 + B1F1 SINE Alu 4 149 0 1 1262 258 183 100 0 chr3 88863533 88863593 -70736190 - B1_Mus2 SINE Alu -80 67 2 1 1262 693 238 0 20 chr3 88863723 88863873 -70735910 - B3 SINE B2 -67 149 3 1 1262 550 158 10 0 chr3 88863998 88864099 -70735684 + B3 SINE B2 13 114 -102 1 1262 405 223 174 135 chr3 88864105 88864291 -70735492 + B3 SINE B2 2 194 -22 1 1262 405 0 0 0 chr3 88864291 88864336 -70735447 + (TAGA)n Simple_repeat Simple_repeat 4 48 0 1 1262 405 223 174 135 chr3 88864336 88864356 -70735427 + B3 SINE B2 195 216 0 1 1262 23 68 0 0 chr3 88864356 88864400 -70735383 + AT_rich Low_complexity Low_complexity 1 44 0 1 1262 844 181 220 0 chr3 88864423 88864600 -70735183 - B3 SINE B2 0 216 1 1 1262 314 176 0 0 chr3 88864749 88864800 -70734983 + RSINE1 SINE B4 14 64 -101 1 1262 769 253 6 12 chr3 88864890 88865058 -70734725 + B3 SINE B2 50 216 0 1 1262 327 220 27 27 chr3 88865155 88865284 -70734499 - B3 SINE B2 -42 174 1 1 1262 275 267 21 32 chr3 88865613 88865706 -70734077 + PB1D9 SINE Alu 22 113 -7 1 1262 505 226 11 9 chr3 88865721 88865847 -70733936 + B1_Mur1 SINE Alu 5 126 -23 1 1262 573 145 83 33 chr3 88866243 88866364 -70733419 + B3 SINE B2 4 130 -86 1 157 650 278 61 35 chr3 88866764 88866962 -70732821 + B3 SINE B2 5 207 -9 1 1263 401 202 13 0 chr3 88866986 88867065 -70732718 + B3 SINE B2 4 83 -133 1 1263 237 167 0 0 chr3 88867293 88867335 -70732448 - B1F SINE Alu -100 49 8 1 1263 195 114 0 0 chr3 88867473 88867508 -70732275 + (GA)n Simple_repeat Simple_repeat 2 36 0 1 1263 1996 203 73 20 chr3 88867969 88868058 -70731725 - RLTR20C LTR ERVK 0 534 446 1 1263 210 91 0 0 chr3 88868058 88868091 -70731692 + (CA)n Simple_repeat Simple_repeat 2 34 0 1 1263 1996 203 73 20 chr3 88868091 88868508 -70731275 - RLTR20C LTR ERVK -89 445 3 1 1263 454 336 133 0 chr3 88868514 88868657 -70731126 - RSINE1 SINE B4 0 165 4 1 1263 1144 97 0 0 chr3 88868718 88868863 -70730920 + B1_Mus2 SINE Alu 1 145 -2 1 1263 315 0 0 0 chr3 88868863 88868898 -70730885 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 1 1263 418 269 75 0 chr3 88868908 88869001 -70730782 + B1_Mur2 SINE Alu 3 102 -47 1 1263 402 386 6 61 chr3 88869042 88869205 -70730578 + RSINE1 SINE B4 4 157 -8 1 1263 230 307 26 122 chr3 88869235 88869350 -70730433 + B4 SINE B4 16 119 -173 1 1263 222 327 65 28 chr3 88869519 88869626 -70730157 + PB1D10 SINE Alu 1 111 -6 1 1263 25 31 0 0 chr3 88870870 88870902 -70728881 + AT_rich Low_complexity Low_complexity 1 32 0 1 1263 624 176 31 31 chr3 88871227 88871356 -70728427 + B1_Mus1 SINE Alu 1 129 -19 1 1263 287 314 11 34 chr3 88871418 88871507 -70728276 - PB1D10 SINE Alu 0 117 31 1 1263 1407 105 16 0 chr3 88871565 88871756 -70728027 + B2_Mm2 SINE B2 2 195 0 1 1263 562 212 74 20 chr3 88871892 88872041 -70727742 + RSINE1 SINE B4 9 165 0 1 1263 240 176 0 0 chr3 88872163 88872231 -70727552 + T-rich Low_complexity Low_complexity 1 68 0 1 1263 1037 84 0 0 chr3 88872238 88872380 -70727403 - B1_Mus1 SINE Alu -2 146 5 1 1263 675 84 0 0 chr3 88872387 88872482 -70727301 - B1_Mus2 SINE Alu 0 147 53 1 1263 230 146 0 40 chr3 88873058 88873108 -70726675 + (CGTG)n Simple_repeat Simple_repeat 4 51 0 1 1263 244 213 21 0 chr3 88873229 88873276 -70726507 - Lx8 LINE L1 -271 7202 7155 1 1263 331 260 5 16 chr3 88873345 88873458 -70726325 - B1F SINE Alu -36 112 1 1 1263 214 296 16 174 chr3 88873458 88873564 -70726219 - ID SINE ID -146 78 2 1 1263 712 184 48 28 chr3 88873588 88873733 -70726050 + B1_Mur1 SINE Alu 2 149 0 1 1263 592 113 21 0 chr3 88873831 88873928 -70725855 + PB1D9 SINE Alu 22 120 0 1 1263 1012 200 34 10 chr3 88874617 88874824 -70724959 + B3 SINE B2 5 216 0 1 1263 470 158 256 26 chr3 88874894 88875011 -70724772 - B1_Mus1 SINE Alu 0 148 5 1 1263 288 0 0 0 chr3 88875021 88875053 -70724730 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 1 1263 516 226 42 63 chr3 88875077 88875219 -70724564 - B1_Mur1 SINE Alu -1 148 10 1 1263 408 204 139 46 chr3 88876002 88876110 -70723673 - PB1D9 SINE Alu 0 120 3 1 1263 702 277 40 30 chr3 88876117 88876318 -70723465 - B3A SINE B2 -6 210 8 1 1263 219 368 11 0 chr3 88876551 88876638 -70723145 - PB1D10 SINE Alu -5 112 25 1 1263 266 210 63 99 chr3 88876696 88876807 -70722976 - B4A SINE B4 0 292 186 1 1263 626 173 0 18 chr3 88877007 88877119 -70722664 + B1_Mur1 SINE Alu 34 143 -6 1 1263 277 260 0 14 chr3 88877160 88877234 -70722549 - ID_B1 SINE B4 -8 216 144 1 1263 360 250 103 35 chr3 88877307 88877423 -70722360 + B1_Mur1 SINE Alu 2 125 -24 1 1263 373 228 43 0 chr3 88877450 88877542 -70722241 + RSINE1 SINE B4 2 97 -68 1 1263 210 71 0 0 chr3 88877585 88877613 -70722170 + (TGGA)n Simple_repeat Simple_repeat 2 29 0 1 1263 1236 119 11 0 chr3 88878044 88878221 -70721562 + B2_Mm1t SINE B2 1 179 -14 1 1263 274 132 319 26 chr3 88878282 88878398 -70721385 + B2_Mm2 SINE B2 46 195 0 1 1263 603 0 0 0 chr3 88878432 88878499 -70721284 + (TAGA)n Simple_repeat Simple_repeat 1 67 0 1 1263 435 38 0 0 chr3 88878500 88878553 -70721230 + (CAGG)n Simple_repeat Simple_repeat 1 53 0 1 1263 611 98 321 0 chr3 88878997 88879109 -70720674 + B1_Mus1 SINE Alu 1 148 0 1 1263 613 281 22 38 chr3 88879233 88879418 -70720365 + B3A SINE B2 1 182 -16 1 1263 285 174 0 0 chr3 88880269 88880338 -70719445 + (TG)n Simple_repeat Simple_repeat 2 70 0 1 1263 1261 97 43 11 chr3 88880400 88880587 -70719196 - B2_Mm1t SINE B2 0 193 1 1 1263 552 227 0 0 chr3 88882104 88882254 -70717529 + (TG)n Simple_repeat Simple_repeat 1 150 0 1 1263 246 217 0 0 chr3 88883543 88883589 -70716194 - B1F SINE Alu -9 140 95 1 1263 228 234 112 38 chr3 88883634 88883714 -70716069 - BC1_Mm scRNA scRNA -65 87 2 1 1263 191 286 0 0 chr3 88883882 88883931 -70715852 - MIRc SINE MIR -112 156 108 1 1263 1240 41 0 0 chr3 88884003 88884149 -70715634 + B1_Mus2 SINE Alu 2 147 0 1 1263 1448 84 16 0 chr3 88884240 88884431 -70715352 - B2_Mm2 SINE B2 0 195 2 1 1263 2204 125 12 9 chr3 88884444 88884790 -70714993 - Lx3A LINE L1 0 6981 6635 1 1263 2168 153 32 123 chr3 88884897 88885100 -70714683 + Lx5 LINE L1 6149 6358 -692 1 1263 1140 58 0 0 chr3 88885100 88885237 -70714546 + B1_Mm SINE Alu 2 138 -9 1 1263 2168 158 32 118 chr3 88885237 88885507 -70714276 + Lx5 LINE L1 6359 6898 -562 1 1263 441 267 80 0 chr3 88885944 88886094 -70713689 + RSINE1 SINE B4 2 163 -2 1 1263 278 281 105 0 chr3 88886126 88886240 -70713543 + B3A SINE B2 1 126 -72 1 1263 787 121 0 8 chr3 88886295 88886428 -70713355 - B2_Mm2 SINE B2 -1 194 63 1 1263 333 102 0 0 chr3 88886456 88886515 -70713268 + (T)n Simple_repeat Simple_repeat 1 59 0 1 1263 1190 62 0 0 chr3 88886515 88886660 -70713123 - B1_Mus1 SINE Alu 0 148 4 1 1263 532 71 0 0 chr3 88886660 88886730 -70713053 - B2_Mm2 SINE B2 -124 71 2 1 1263 595 152 45 0 chr3 88886730 88886842 -70712941 + URR1B DNA MER1_type 93 209 -16 1 1263 221 190 103 0 chr3 88886862 88886920 -70712863 + RSINE1 SINE B4 82 145 -20 1 1263 21 0 0 0 chr3 88886937 88886958 -70712825 + AT_rich Low_complexity Low_complexity 1 21 0 1 1263 251 186 0 79 chr3 88886984 88886999 -70712784 + (TAAA)n Simple_repeat Simple_repeat 4 18 0 1 1263 1184 41 7 7 chr3 88886999 88887147 -70712636 + B1_Mus1 SINE Alu 1 148 0 1 1263 251 186 0 79 chr3 88887147 88887175 -70712608 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 1 1263 1366 64 42 11 chr3 88887175 88887364 -70712419 + B2_Mm2 SINE B2 1 195 0 1 1263 251 186 0 79 chr3 88887364 88887395 -70712388 + (TAAA)n Simple_repeat Simple_repeat 1 29 0 1 1263 321 158 18 0 chr3 88887414 88887471 -70712312 + B1F2 SINE Alu 1 58 -91 1 1263 307 247 14 0 chr3 88887471 88887487 -70712296 + B4A SINE B4 86 159 -133 1 1263 791 73 0 0 chr3 88887515 88887624 -70712159 + B1_Mus2 SINE Alu 39 147 0 1 1263 465 245 59 0 chr3 88887667 88887769 -70712014 + PB1D9 SINE Alu 1 108 -12 1 1263 209 273 120 141 chr3 88889282 88889474 -70710309 + L2b LINE L2 3175 3362 -13 1 1263 261 247 198 31 chr3 88889494 88889590 -70710193 + PB1D10 SINE Alu 6 117 0 1 1263 1241 98 32 5 chr3 88889614 88889799 -70709984 + B2_Mm1t SINE B2 1 190 -3 1 1263 255 291 58 10 chr3 88889860 88889964 -70709819 + PB1D10 SINE Alu 4 112 -5 1 1263 592 214 137 0 chr3 88889969 88890086 -70709697 + B1_Mur3 SINE Alu 5 137 -12 1 1263 303 28 0 0 chr3 88890086 88890122 -70709661 + (TAAA)n Simple_repeat Simple_repeat 2 37 0 1 1263 329 219 16 0 chr3 88890149 88890213 -70709570 + PB1D9 SINE Alu 51 115 -5 1 1263 1465 65 0 16 chr3 88890224 88890413 -70709370 + B2_Mm2 SINE B2 1 186 -9 1 1263 263 138 85 17 chr3 88890426 88890485 -70709298 - B3 SINE B2 -1 215 153 1 1263 933 127 42 0 chr3 88891115 88891257 -70708526 - B1_Mus1 SINE Alu 0 148 1 1 1263 196 333 157 41 chr3 88891257 88891398 -70708385 - L2a LINE L2 -268 3158 3000 1 1263 309 68 0 0 chr3 88897118 88897162 -70702621 + (TCCA)n Simple_repeat Simple_repeat 2 45 0 1 1263 658 227 75 32 chr3 88899882 88900128 -70699655 + MTD LTR MaLR 1 262 -134 1 1263 352 320 167 0 chr3 88900203 88900359 -70699424 - ID_B1 SINE B4 -40 184 3 1 1263 282 241 63 0 chr3 88900487 88900566 -70699217 - PB1D10 SINE Alu -2 115 32 1 1263 262 258 67 129 chr3 88900566 88900696 -70699087 - ID_B1 SINE B4 -2 222 27 1 1263 351 323 10 30 chr3 88900775 88900874 -70698909 - RSINE1 SINE B4 -12 153 57 1 1263 376 290 37 0 chr3 88900934 88901041 -70698742 - RSINE1 SINE B4 -7 158 48 1 1263 307 250 0 84 chr3 88901103 88901186 -70698597 + ID_B1 SINE B4 67 142 -82 1 1263 458 226 87 19 chr3 88901131 88901235 -70698548 + PB1D10 SINE Alu 7 117 0 1 1263 1048 110 14 0 chr3 88901236 88901382 -70698401 + B1_Mus1 SINE Alu 1 148 0 1 1263 264 200 17 52 chr3 88901632 88901690 -70698093 - RSINE1 SINE B4 0 165 110 1 1263 257 195 0 0 chr3 88901670 88901711 -70698072 - B4A SINE B4 -18 274 234 1 1263 495 183 54 0 chr3 88901842 88901935 -70697848 - U6 snRNA snRNA -9 98 1 1 1263 669 238 127 0 chr3 88901937 88902118 -70697665 - B3 SINE B2 -10 206 3 1 1263 438 265 171 7 chr3 88902118 88902270 -70697513 - B4A SINE B4 -60 232 56 1 1263 510 236 33 128 chr3 88902387 88902567 -70697216 - B4A SINE B4 -38 254 92 1 1263 231 114 0 0 chr3 88902825 88902860 -70696923 + (T)n Simple_repeat Simple_repeat 1 35 0 1 1263 735 170 28 28 chr3 88902880 88903025 -70696758 - B1_Mur4 SINE Alu 0 150 6 1 1263 314 266 41 123 chr3 88902924 88903070 -70696713 - MT2B LTR ERVL -344 257 124 1 1263 528 176 44 0 chr3 88903979 88904070 -70695713 + B3 SINE B2 3 97 -119 1 1263 251 303 45 27 chr3 88904153 88904265 -70695518 + PB1D10 SINE Alu 3 116 -1 1 1263 471 153 35 12 chr3 88906722 88906808 -70692975 - B1_Mur3 SINE Alu -1 148 61 1 1263 985 33 0 0 chr3 88907616 88907737 -70692046 - B1_Mus2 SINE Alu 0 147 27 1 1263 246 32 0 0 chr3 88907849 88907880 -70691903 + (TC)n Simple_repeat Simple_repeat 2 32 0 1 1263 423 0 0 0 chr3 88907880 88907926 -70691857 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 1263 306 194 81 27 chr3 88908087 88908161 -70691622 - L1MEg LINE L1 -4146 1938 1861 1 1263 1152 57 0 28 chr3 88908389 88908533 -70691250 + B1_Mus1 SINE Alu 1 140 -8 1 1263 287 25 25 0 chr3 88908533 88908573 -70691210 + (CAA)n Simple_repeat Simple_repeat 2 42 0 1 1263 320 220 17 0 chr3 88908734 88908793 -70690990 + MER21B LTR ERV1 547 606 -257 1 1263 443 240 0 113 chr3 88909068 88909107 -70690676 + B3A SINE B2 1 29 -169 1 1263 1050 109 96 17 chr3 88909107 88909284 -70690499 + B2_Mm1t SINE B2 3 193 0 1 1263 443 240 0 113 chr3 88909284 88909385 -70690398 + B3A SINE B2 30 125 -73 1 1263 1306 73 45 6 chr3 88909435 88909614 -70690169 - B2_Mm2 SINE B2 -8 187 2 1 1263 303 290 37 18 chr3 88909616 88909715 -70690068 - L1MDa LINE L1 -4094 2539 2438 1 1263 1109 65 50 0 chr3 88909715 88909854 -70689929 - B1_Mus2 SINE Alu 0 147 2 1 1263 316 250 14 27 chr3 88909883 88909957 -70689826 - MTEa LTR MaLR -42 337 265 1 1263 266 47 47 0 chr3 88910074 88910117 -70689666 + (CAAA)n Simple_repeat Simple_repeat 1 45 0 1 1263 682 272 0 13 chr3 88910152 88910305 -70689478 + RSINE1 SINE B4 15 165 0 1 1263 324 120 0 0 chr3 88910306 88910356 -70689427 + (CACCAT)n Simple_repeat Simple_repeat 1 50 0 1 1263 1932 125 81 11 chr3 88910836 88911184 -70688599 + RMER6B LTR ERVK 90 461 0 1 1263 279 79 0 0 chr3 88911445 88911483 -70688300 + (TTTTC)n Simple_repeat Simple_repeat 1 38 0 1 1263 273 291 104 52 chr3 88911483 88911617 -70688166 - B3A SINE B2 0 198 58 1 1263 400 335 62 57 chr3 88911767 88911976 -70687807 - MER21B LTR ERV1 -163 700 491 1 1263 26 0 0 0 chr3 88912559 88912585 -70687198 + AT_rich Low_complexity Low_complexity 1 26 0 1 1263 606 216 262 6 chr3 88912585 88912757 -70687026 - B3 SINE B2 0 216 1 1 1263 1004 87 65 0 chr3 88912785 88912923 -70686860 - B1_Mus1 SINE Alu -1 147 1 1 1263 466 312 87 0 chr3 88912996 88913134 -70686649 - RSINE1 SINE B4 -10 155 6 1 1263 427 271 116 0 chr3 88913178 88913307 -70686476 - ID_B1 SINE B4 -23 201 58 1 1263 2289 181 63 57 chr3 88913462 88913556 -70686227 - RLTR24 LTR ERV1 0 529 436 1 1263 1341 97 32 5 chr3 88913556 88913742 -70686041 + B2_Mm2 SINE B2 1 191 -4 1 1263 2289 181 63 57 chr3 88913742 88914173 -70685610 - RLTR24 LTR ERV1 -94 435 2 1 1263 372 22 0 0 chr3 88914236 88914281 -70685502 + (TC)n Simple_repeat Simple_repeat 1 45 0 1 1263 1141 54 7 13 chr3 88914288 88914438 -70685345 + RLTR19B LTR ERVK 13 161 -554 1 1263 1286 113 0 35 chr3 88914421 88914623 -70685160 - B2_Mm2 SINE B2 0 195 1 1 1263 3573 119 11 2 chr3 88914625 88915146 -70684637 + RLTR19B LTR ERVK 190 715 0 1 1263 549 242 0 126 chr3 88915263 88915414 -70684369 - B1_Mur2 SINE Alu -12 137 6 1 1263 1042 72 13 7 chr3 88915863 88916016 -70683767 + (TTTC)n Simple_repeat Simple_repeat 2 155 0 1 1263 1239 48 7 0 chr3 88916035 88916181 -70683602 - B1_Mus2 SINE Alu 0 147 1 1 1263 213 114 0 0 chr3 88916181 88916190 -70683593 + (T)n Simple_repeat Simple_repeat 1 9 0 1 1263 1384 75 37 5 chr3 88916190 88916378 -70683405 - B2_Mm2 SINE B2 0 195 2 1 1263 213 114 0 0 chr3 88916378 88916403 -70683380 + (T)n Simple_repeat Simple_repeat 1 25 0 1 1263 730 112 0 27 chr3 88916503 88916613 -70683170 - B2_Mm2 SINE B2 -88 107 1 1 1263 490 290 33 0 chr3 88916628 88916761 -70683022 - B1_Mur1 SINE Alu 0 147 3 1 1263 224 390 10 10 chr3 88916676 88916772 -70683011 - B4A SINE B4 -119 173 78 1 1263 574 223 0 51 chr3 88916776 88916894 -70682889 + B1_Mus2 SINE Alu 36 147 0 1 1263 270 0 0 0 chr3 88916987 88917017 -70682766 + (A)n Simple_repeat Simple_repeat 1 30 0 1 1263 502 197 102 18 chr3 88917226 88917352 -70682431 + B1_Mus2 SINE Alu 2 137 -11 1 1263 1231 68 0 0 chr3 88917587 88917735 -70682048 + B1_Mus1 SINE Alu 1 148 0 1 1263 817 264 58 12 chr3 88917745 88918002 -70681781 + RMER5 LTR ERV1 68 336 -198 1 1263 831 95 167 0 chr3 88918205 88918331 -70681452 - B1_Mus1 SINE Alu 0 148 2 1 1263 319 246 69 99 chr3 88918341 88918461 -70681322 + RMER5 LTR ERV1 340 457 -77 1 1263 624 38 0 0 chr3 88918461 88918540 -70681243 + (TC)n Simple_repeat Simple_repeat 2 80 0 1 1263 1449 64 21 0 chr3 88918540 88918727 -70681056 - B2_Mm2 SINE B2 -3 192 2 1 1263 414 57 0 0 chr3 88918773 88918826 -70680957 + (TC)n Simple_repeat Simple_repeat 1 53 0 1 1263 514 318 28 6 chr3 88919086 88919263 -70680520 - B3A SINE B2 -16 182 2 1 1263 492 287 75 65 chr3 88919353 88919539 -70680244 + B4A SINE B4 1 188 -104 1 1263 22 0 0 0 chr3 88919861 88919883 -70679900 + AT_rich Low_complexity Low_complexity 1 22 0 1 1263 243 0 0 0 chr3 88920168 88920195 -70679588 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 1263 781 53 0 0 chr3 88920195 88920290 -70679493 - B1_Mm SINE Alu -10 137 43 1 1263 344 179 88 25 chr3 88920228 88920308 -70679475 - RLTR25B LTR ERVK -519 509 425 1 1263 440 254 17 17 chr3 88920368 88920488 -70679295 - PB1D9 SINE Alu 0 120 1 1 1263 444 71 0 3 chr3 88921229 88921297 -70678486 - B1_Mur4 SINE Alu -83 66 1 1 1263 205 137 19 38 chr3 88921887 88921940 -70677843 + CT-rich Low_complexity Low_complexity 1 52 0 1 1263 1439 84 5 0 chr3 88922602 88922792 -70676991 + B2_Mm1a SINE B2 2 192 -1 1 1263 288 196 0 0 chr3 88922878 88922920 -70676863 + T-rich Low_complexity Low_complexity 56 97 0 1 1263 1301 27 0 0 chr3 88922920 88923066 -70676717 - B1_Mm SINE Alu 0 147 2 1 1263 288 196 0 0 chr3 88923066 88923120 -70676663 + T-rich Low_complexity Low_complexity 2 55 0 1 1263 646 89 19 19 chr3 88923121 88923224 -70676559 - B1_Mus2 SINE Alu -1 146 44 1 1263 2077 216 68 21 chr3 88923286 88923771 -70676012 - RLTR20B1 LTR ERVK -17 546 6 1 1263 276 53 0 0 chr3 88924138 88924176 -70675607 + (T)n Simple_repeat Simple_repeat 1 38 0 1 1263 217 132 0 0 chr3 88924184 88924222 -70675561 + (TTTTTG)n Simple_repeat Simple_repeat 6 43 0 1 1263 1149 62 21 0 chr3 88924222 88924367 -70675416 - B1_Mus1 SINE Alu 0 148 1 1 1263 796 371 31 20 chr3 88924592 88925353 -70674430 + MuLV-int LTR ERV1 2674 3443 -4163 1 1263 318 41 0 0 chr3 88925564 88925613 -70674170 - B2_Mm1t SINE B2 -8 185 137 1 1263 311 95 0 0 chr3 88925606 88925648 -70674135 - B2_Mm2 SINE B2 -153 42 1 1 1263 418 290 38 31 chr3 88925695 88925855 -70673928 + RLTR14-int LTR ERV1 3303 3463 -1854 1 1263 1208 90 16 63 chr3 88925863 88926053 -70673730 - B2_Mm2 SINE B2 -14 181 1 1 1263 288 0 0 0 chr3 88926085 88926117 -70673666 + (A)n Simple_repeat Simple_repeat 1 32 0 1 1263 1203 43 0 0 chr3 88926121 88926261 -70673522 + B1_Mus2 SINE Alu 1 140 -7 1 1263 234 0 0 0 chr3 88926262 88926288 -70673495 + (CA)n Simple_repeat Simple_repeat 1 26 0 1 1263 663 203 64 14 chr3 88926471 88926583 -70673200 + B1_Mur3 SINE Alu 1 117 -32 1 1263 306 106 0 0 chr3 88926583 88926630 -70673153 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 1263 663 203 64 14 chr3 88926630 88926657 -70673126 + B1_Mur3 SINE Alu 118 147 -2 1 1263 21 0 0 0 chr3 88926659 88926680 -70673103 + AT_rich Low_complexity Low_complexity 1 21 0 1 1263 1596 37 5 0 chr3 88928569 88928760 -70671023 + B2_Mm1t SINE B2 2 193 0 1 1263 524 231 102 0 chr3 88928841 88928949 -70670834 + B1F SINE Alu 3 121 -28 1 1263 211 114 0 54 chr3 88928921 88928958 -70670825 + PB1D10 SINE Alu 62 96 -21 1 1263 726 280 12 43 chr3 88928962 88929126 -70670657 + RSINE1 SINE B4 3 161 -4 1 1263 281 26 26 0 chr3 88929129 88929167 -70670616 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 1263 260 311 107 58 chr3 88929167 88929202 -70670581 + B3 SINE B2 182 215 -1 1 1263 2171 101 25 12 chr3 88929597 88929918 -70669865 - IAPLTR2b LTR ERVK -2 325 1 1 1263 1639 209 40 30 chr3 88929952 88930322 -70669461 + ORR1D1 LTR MaLR 1 374 0 1 1263 262 254 127 0 chr3 88930341 88930412 -70669371 - ID4 SINE ID -3 80 1 1 1263 1475 68 16 0 chr3 88930433 88930625 -70669158 - B2_Mm2 SINE B2 0 195 1 1 1263 873 90 214 71 chr3 88930675 88930829 -70668954 + B2_Mm2 SINE B2 1 179 -16 1 1263 1181 55 0 40 chr3 88930829 88930980 -70668803 + B1_Mus1 SINE Alu 1 145 -3 1 1263 873 90 214 71 chr3 88930980 88930993 -70668790 + B2_Mm2 SINE B2 180 192 -3 1 1263 1691 36 0 0 chr3 88931033 88931226 -70668557 - B2_Mm1t SINE B2 0 193 1 1 1263 4126 156 117 37 chr3 88931226 88932031 -70667752 - RMER19B LTR ERVK -13 889 20 1 1263 352 237 0 0 chr3 88932430 88932506 -70667277 - B3 SINE B2 -13 203 128 1 1263 774 208 7 27 chr3 88932559 88932707 -70667076 + B1_Mur3 SINE Alu 4 148 -1 1 1263 563 292 17 29 chr3 88933092 88933265 -70666518 - B3 SINE B2 -44 172 2 1 1263 378 34 0 0 chr3 88933428 88933478 -70666305 + B1_Mm SINE Alu 89 138 -9 1 1263 476 56 14 0 chr3 88933488 88933560 -70666223 + (CAAAA)n Simple_repeat Simple_repeat 2 74 0 1 1263 227 270 16 16 chr3 88933589 88933653 -70666130 - RSINE1 SINE B4 -100 65 2 1 1263 817 201 138 0 chr3 88933680 88933869 -70665914 - B3 SINE B2 -1 215 1 1 1263 195 280 92 51 chr3 88934247 88934345 -70665438 - MER5B DNA MER1_type -3 175 74 1 1263 324 364 15 8 chr3 88934380 88934513 -70665270 - MT2A LTR ERVL -170 363 230 1 1263 204 162 0 81 chr3 88934533 88934607 -70665176 + (CACTG)n Simple_repeat Simple_repeat 4 71 0 1 1263 419 281 51 22 chr3 88934643 88934669 -70665114 - ID_B1 SINE B4 -1 223 82 1 1263 745 152 0 0 chr3 88934669 88934781 -70665002 - B1_Mus2 SINE Alu -35 112 1 1 1263 254 248 35 17 chr3 88934689 88934804 -70664979 - ORR1B1-int LTR MaLR -770 739 623 1 1263 342 287 28 9 chr3 88934809 88934918 -70664865 - RSINE1 SINE B4 0 165 55 1 1263 1077 88 59 0 chr3 88934948 88935118 -70664665 - L1Md_F2 LINE L1 -12 6570 6391 1 1263 2772 47 0 3 chr3 88935242 88935586 -70664197 - L1Md_F2 LINE L1 -209 6373 6031 1 1263 350 298 39 46 chr3 88935634 88935764 -70664019 - B1F SINE Alu -8 141 13 1 1263 700 145 65 0 chr3 88935841 88935965 -70663818 + B3 SINE B2 85 216 0 1 1263 221 0 35 0 chr3 88936735 88936764 -70663019 + (GA)n Simple_repeat Simple_repeat 2 31 0 1 1263 226 285 168 62 chr3 88937697 88937858 -70661925 + L2a LINE L2 2373 2550 -869 1 1263 200 217 0 0 chr3 88938661 88938707 -70661076 + (CTG)n Simple_repeat Simple_repeat 3 48 0 1 1263 212 258 9 126 chr3 88938851 88938962 -70660821 + L2a LINE L2 3268 3365 -61 1 1263 742 57 276 0 chr3 88939443 88939548 -70660235 + B1_Mus1 SINE Alu 2 135 -13 1 1263 1115 117 0 11 chr3 88939548 88939729 -70660054 + (GAGAA)n Simple_repeat Simple_repeat 2 180 0 1 1263 184 373 80 18 chr3 88940905 88941017 -70658766 + MIRc SINE MIR 94 212 -56 1 1263 533 182 128 53 chr3 88941493 88941626 -70658157 - B1_Mus2 SINE Alu 0 147 5 1 1263 275 273 0 0 chr3 88941640 88941695 -70658088 - ID_B1 SINE B4 -7 217 163 1 1263 268 330 90 72 chr3 88941695 88941751 -70658032 - PB1D7 SINE Alu -7 113 1 1 1263 1196 74 0 0 chr3 88941767 88941915 -70657868 + B1_Mus1 SINE Alu 1 148 0 1 1263 814 174 0 0 chr3 88942077 88942198 -70657585 + B1_Mur2 SINE Alu 1 121 -28 1 1263 183 42 0 0 chr3 88942202 88942226 -70657557 + (CAA)n Simple_repeat Simple_repeat 2 25 0 1 1263 23 0 0 0 chr3 88942254 88942277 -70657506 + AT_rich Low_complexity Low_complexity 1 23 0 1 1263 416 277 0 10 chr3 88942422 88942524 -70657259 + PB1D7 SINE Alu 18 118 -2 1 1263 667 233 77 31 chr3 88942546 88942741 -70657042 + ID_B1 SINE B4 5 208 -16 1 1263 522 0 0 0 chr3 88942741 88942799 -70656984 + (TAAAA)n Simple_repeat Simple_repeat 2 59 0 1 1263 204 125 0 0 chr3 88942800 88942832 -70656951 + (TAAA)n Simple_repeat Simple_repeat 2 33 0 1 1263 210 150 0 0 chr3 88942832 88942872 -70656911 + (GGA)n Simple_repeat Simple_repeat 1 40 0 1 1263 1284 65 42 32 chr3 88943100 88943290 -70656493 - B2_Mm1t SINE B2 -1 192 1 1 1263 270 240 159 8 chr3 88943300 88943426 -70656357 - B1F1 SINE Alu -1 148 4 1 1263 216 97 0 0 chr3 88943639 88943670 -70656113 + (TTCA)n Simple_repeat Simple_repeat 3 33 0 1 1263 898 131 15 0 chr3 88943670 88943807 -70655976 - B1_Mur4 SINE Alu -11 139 1 1 1263 229 230 10 130 chr3 88943874 88943974 -70655809 + L2 LINE L2 2593 2680 -739 1 1263 311 211 27 27 chr3 88943974 88944047 -70655736 + PB1D7 SINE Alu 46 118 -2 1 1263 246 136 74 0 chr3 88944155 88944236 -70655547 + (CA)n Simple_repeat Simple_repeat 2 88 0 1 1263 337 160 33 40 chr3 88944282 88944432 -70655351 + (CA)n Simple_repeat Simple_repeat 1 149 0 1 1263 318 60 0 123 chr3 88944432 88944489 -70655294 + HAL1-3A_ME LINE L1 1976 2025 -833 1 1263 946 254 15 0 chr3 88944494 88944699 -70655084 + ID_B1 SINE B4 13 220 -4 1 1263 450 245 41 54 chr3 88947867 88948014 -70651769 - ID_B1 SINE B4 -1 223 79 1 1263 502 259 73 18 chr3 88948016 88948181 -70651602 - B3A SINE B2 0 198 25 1 1263 1084 75 0 26 chr3 88948183 88948334 -70651449 + B1_Mm SINE Alu 1 147 0 1 1263 648 267 110 0 chr3 88948410 88948601 -70651182 - B3 SINE B2 -1 215 4 1 1263 234 273 54 54 chr3 88948615 88948708 -70651075 - MIRc SINE MIR -133 135 43 1 1263 430 279 0 18 chr3 88949983 88950096 -70649687 - PB1D9 SINE Alu 0 120 10 1 1263 290 264 208 39 chr3 88950096 88950113 -70649670 - ID_B1 SINE B4 0 224 73 1 1263 274 250 0 26 chr3 88950662 88950740 -70649043 + (TAAA)n Simple_repeat Simple_repeat 4 79 0 1 1263 197 214 0 0 chr3 88951283 88951325 -70648458 + L2a LINE L2 3355 3396 -30 1 1263 183 80 0 0 chr3 88952295 88952320 -70647463 + (G)n Simple_repeat Simple_repeat 1 25 0 1 1263 189 315 19 0 chr3 88953358 88953412 -70646371 + MER5B DNA MER1_type 1 55 -123 1 1263 694 144 128 0 chr3 88953436 88953561 -70646222 + B1_Mur2 SINE Alu 3 143 -6 1 1263 411 218 0 11 chr3 88955649 88955737 -70644046 + PB1D10 SINE Alu 1 87 -30 1 1263 243 337 0 23 chr3 88955658 88955746 -70644037 + 4.5SRNA scRNA scRNA 9 94 0 1 1263 322 208 122 27 chr3 88955752 88955788 -70643995 + L1MEg LINE L1 1870 1907 -4177 1 1263 818 163 57 0 chr3 88955788 88955929 -70643854 + B1_Mur3 SINE Alu 1 149 0 1 1263 322 208 122 27 chr3 88955929 88955966 -70643817 + L1MEg LINE L1 1908 1950 -4134 1 1263 1068 198 15 19 chr3 88955979 88956185 -70643598 - B3 SINE B2 -11 205 1 1 1263 1097 68 0 7 chr3 88957093 88957242 -70642541 + B1_Mus1 SINE Alu 1 148 0 1 1263 306 67 0 0 chr3 88957245 88957290 -70642493 + (A)n Simple_repeat Simple_repeat 1 45 0 1 1263 348 292 0 0 chr3 88957444 88957533 -70642250 - BGLII_B LTR ERVK -23 418 330 1 1263 512 296 86 0 chr3 88957521 88957673 -70642110 - B3 SINE B2 -25 191 27 1 1263 21 0 0 0 chr3 88957673 88957694 -70642089 + AT_rich Low_complexity Low_complexity 1 21 0 1 1263 726 238 104 19 chr3 88957694 88957835 -70641948 - Lx7 LINE L1 0 7696 7556 1 1263 1264 105 26 0 chr3 88957835 88958025 -70641758 + B2_Mm2 SINE B2 1 195 0 1 1263 726 238 104 19 chr3 88958025 88958153 -70641630 - Lx7 LINE L1 -141 7555 7405 1 1263 224 208 0 0 chr3 88958157 88958205 -70641578 + (CA)n Simple_repeat Simple_repeat 1 48 0 1 1263 549 229 0 0 chr3 88958216 88958459 -70641324 + (CA)n Simple_repeat Simple_repeat 1 243 0 1 1263 1207 34 0 0 chr3 88958473 88958619 -70641164 + B1_Mus2 SINE Alu 2 147 0 1 1263 2139 227 58 47 chr3 88958642 88959261 -70640522 - Lx7 LINE L1 -272 7424 6799 1 1263 991 217 129 56 chr3 88959261 88959306 -70640477 + ORR1C2 LTR MaLR 1 54 -313 1 1263 1045 70 28 0 chr3 88959306 88959448 -70640335 + B1_Mus1 SINE Alu 1 146 -2 1 1263 1254 158 104 66 chr3 88959448 88959558 -70640225 + ORR1C2 LTR MaLR 55 182 -202 1 1263 1203 98 49 0 chr3 88959558 88959742 -70640041 - B2_Mm1t SINE B2 0 193 1 1 1263 1254 149 100 68 chr3 88959742 88959927 -70639856 + ORR1C2 LTR MaLR 183 384 0 1 1263 1651 202 9 12 chr3 88959927 88960247 -70639536 - Lx7 LINE L1 -893 6803 6485 1 1263 262 167 0 5 chr3 88960248 88960311 -70639472 - B3A SINE B2 -154 62 1 1 1263 692 110 228 27 chr3 88960360 88960509 -70639274 + B2_Mm1t SINE B2 2 180 -13 1 1263 327 49 0 0 chr3 88960509 88960550 -70639233 + (GA)n Simple_repeat Simple_repeat 2 42 0 1 1263 329 0 0 24 chr3 88960646 88960688 -70639095 + (TTA)n Simple_repeat Simple_repeat 2 42 0 1 1263 209 306 0 0 chr3 88960963 88961025 -70638758 + A-rich Low_complexity Low_complexity 1 62 0 1 1263 625 274 0 0 chr3 88961111 88961235 -70638548 - RSINE1 SINE B4 -5 160 37 1 1263 978 128 0 7 chr3 88961390 88961539 -70638244 + B1_Mus1 SINE Alu 1 148 0 1 1263 225 206 0 16 chr3 88961539 88961603 -70638180 + A-rich Low_complexity Low_complexity 4 66 0 1 1263 788 196 130 0 chr3 88961617 88961801 -70637982 + B3 SINE B2 3 210 -6 1 1263 507 141 0 0 chr3 88961837 88961929 -70637854 + (CA)n Simple_repeat Simple_repeat 2 93 0 1 1263 26 0 0 0 chr3 88963944 88963970 -70635813 + GC_rich Low_complexity Low_complexity 1 26 0 1 1263 198 0 0 0 chr3 88964158 88964180 -70635603 + (CGGGG)n Simple_repeat Simple_repeat 2 23 0 1 1263 537 110 0 0 chr3 88964251 88964351 -70635432 + (TG)n Simple_repeat Simple_repeat 1 100 0 1 1263 297 0 0 0 chr3 88964701 88964734 -70635049 + (TTTTG)n Simple_repeat Simple_repeat 3 35 0 1 1263 1036 74 0 0 chr3 88964735 88964870 -70634913 - B1_Mus1 SINE Alu -13 135 1 1 1263 345 238 139 0 chr3 88964945 88965046 -70634737 - PB1D10 SINE Alu 0 117 3 1 1263 714 219 14 0 chr3 88965077 88965223 -70634560 + B1_Mur2 SINE Alu 2 149 0 1 1263 1027 24 0 0 chr3 88965351 88965476 -70634307 + B2_Mm2 SINE B2 2 126 -69 1 1263 599 39 13 0 chr3 88965496 88965574 -70634209 + (GAAA)n Simple_repeat Simple_repeat 2 80 0 1 1263 942 211 5 19 chr3 88965662 88965874 -70633909 - B3 SINE B2 -6 210 2 1 1263 225 0 0 0 chr3 88965952 88965977 -70633806 + (T)n Simple_repeat Simple_repeat 1 25 0 1 1263 989 56 0 47 chr3 88965980 88966129 -70633654 - B1_Mus1 SINE Alu 0 148 7 1 1263 1161 41 7 0 chr3 88966182 88966327 -70633456 + B1_Mm SINE Alu 2 147 0 1 1263 1283 24 134 0 chr3 88966362 88966526 -70633257 - B2_Mm2 SINE B2 -9 186 1 1 1263 528 0 42 0 chr3 88966545 88966617 -70633166 + (TC)n Simple_repeat Simple_repeat 2 76 0 1 1263 650 45 23 0 chr3 88966626 88966714 -70633069 - B1_Mm SINE Alu -2 145 56 1 1263 1200 95 25 31 chr3 88966889 88967085 -70632698 - B2_Mm2 SINE B2 0 195 1 1 1263 827 224 27 41 chr3 88967140 88967359 -70632424 - B3 SINE B2 0 216 1 1 1263 195 173 0 0 chr3 88967360 88967412 -70632371 + A-rich Low_complexity Low_complexity 1 52 0 1 1263 302 211 28 14 chr3 88967414 88967486 -70632297 - ID_B1 SINE B4 -3 221 149 1 1263 1072 57 0 0 chr3 88967489 88967629 -70632154 + B1_Mus1 SINE Alu 3 142 -6 1 1263 279 0 0 0 chr3 88967636 88967667 -70632116 + (A)n Simple_repeat Simple_repeat 1 31 0 1 1263 292 248 144 32 chr3 88967690 88967815 -70631968 - ID_B1 SINE B4 -82 142 4 1 1263 382 300 18 0 chr3 88967823 88967933 -70631850 - PB1D7 SINE Alu -8 112 1 1 1263 234 128 0 0 chr3 88967937 88967976 -70631807 + (TTC)n Simple_repeat Simple_repeat 2 40 0 1 1263 401 250 137 55 chr3 88967995 88968177 -70631606 + B3A SINE B2 1 197 -1 1 1263 224 322 0 32 chr3 88968742 88968899 -70630884 + G-rich Low_complexity Low_complexity 5 156 0 1 1263 480 290 99 33 chr3 88969809 88969991 -70629792 + ID_B1 SINE B4 3 196 -28 1 1263 449 292 21 7 chr3 88969992 88970137 -70629646 + B1_Mur1 SINE Alu 2 148 -1 1 1263 739 204 0 21 chr3 88970157 88970302 -70629481 + B1_Mur4 SINE Alu 9 150 0 1 1263 344 316 106 50 chr3 88971224 88971296 -70628487 + ID_B1 SINE B4 35 201 -23 1 1263 405 230 70 0 chr3 88971296 88971396 -70628387 + B1F SINE Alu 35 141 -8 1 1263 321 52 17 0 chr3 88971438 88971496 -70628287 - L1Md_F2 LINE L1 0 6582 6524 1 1263 902 260 10 0 chr3 88971623 88971819 -70627964 - B3 SINE B2 -10 206 9 1 1263 594 241 27 7 chr3 88971830 88971976 -70627807 - B1_Mur1 SINE Alu 0 149 1 1 1263 958 58 51 0 chr3 88972029 88972167 -70627616 + B1_Mus2 SINE Alu 3 147 0 1 1263 300 268 42 0 chr3 88972168 88972239 -70627544 + L1MEg LINE L1 1882 1955 -4129 1 1263 453 36 0 0 chr3 88974434 88974489 -70625294 + (TC)n Simple_repeat Simple_repeat 2 56 0 1 1263 531 233 23 0 chr3 88974489 88974618 -70625165 - B1F2 SINE Alu -6 143 12 1 1263 269 227 29 67 chr3 88974750 88974854 -70624929 + PB1D10 SINE Alu 11 110 -7 1 1263 986 72 0 41 chr3 88975023 88975168 -70624615 + B1_Mus1 SINE Alu 1 139 -9 1 1263 180 0 0 0 chr3 88975170 88975190 -70624593 + (CCCCCA)n Simple_repeat Simple_repeat 2 21 0 1 1263 809 178 7 14 chr3 88975262 88975410 -70624373 + B1_Mus1 SINE Alu 2 148 0 1 1263 1570 21 21 0 chr3 88975414 88975603 -70624180 + B2_Mm1t SINE B2 1 193 0 1 1263 467 288 73 124 chr3 88975894 88976039 -70623744 - ID_B1 SINE B4 0 224 95 1 1263 1320 81 5 0 chr3 88976039 88976224 -70623559 - B2_Mm1a SINE B2 -6 187 2 1 1263 467 288 73 124 chr3 88976224 88976312 -70623471 - ID_B1 SINE B4 -130 94 3 1 1263 226 283 41 74 chr3 88976356 88976478 -70623305 + B1F SINE Alu 26 143 -6 1 1263 272 292 18 36 chr3 88976576 88976686 -70623097 - PB1D10 SINE Alu -9 108 1 1 1263 285 51 0 0 chr3 88976915 88976954 -70622829 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 1 1263 911 251 9 14 chr3 88976960 88977170 -70622613 - ID_B1 SINE B4 -14 210 2 1 1263 493 226 17 17 chr3 88978631 88978748 -70621035 + PB1D10 SINE Alu 1 117 0 1 1263 403 215 87 40 chr3 88980129 88980255 -70619528 + B1F SINE Alu 11 142 -7 1 1263 744 249 90 0 chr3 88982299 88982500 -70617283 + ID_B1 SINE B4 6 224 0 1 1263 468 257 40 53 chr3 88982503 88982655 -70617128 + RSINE1 SINE B4 12 161 -4 1 1263 271 231 161 21 chr3 88982801 88982894 -70616889 + PB1D10 SINE Alu 12 117 0 1 1263 959 229 14 0 chr3 88983503 88983713 -70616070 - B3 SINE B2 -2 214 2 1 1263 342 231 46 0 chr3 88983942 88984050 -70615733 - PB1D10 SINE Alu -1 116 4 1 1263 319 294 37 12 chr3 88984825 88985044 -70614739 + (AGGTG)n Simple_repeat Simple_repeat 1 224 0 1 1263 1031 82 0 33 chr3 88985469 88985620 -70614163 - B1_Mus2 SINE Alu -1 146 1 1 1263 195 42 0 0 chr3 88988968 88988992 -70610791 + (TG)n Simple_repeat Simple_repeat 1 24 0 1 1263 966 38 107 0 chr3 88989905 88990036 -70609747 - B1_Mus2 SINE Alu -2 145 1 1 1263 1369 44 60 0 chr3 88990065 88990247 -70609536 + B2_Mm1t SINE B2 1 193 0 1 1263 562 164 139 0 chr3 88990263 88990385 -70609398 + B1F2 SINE Alu 5 143 -6 1 1263 360 276 8 49 chr3 88990438 88990560 -70609223 + PB1D10 SINE Alu 1 117 0 1 1263 302 221 148 16 chr3 88993054 88993148 -70606635 + MIR SINE MIR 42 141 -67 1 1263 1233 56 0 0 chr3 88993273 88993433 -70606350 + B2_Mm2 SINE B2 2 161 -34 1 1263 730 172 15 7 chr3 88993489 88993624 -70606159 - B1_Mur4 SINE Alu -11 139 4 1 1263 369 0 0 0 chr3 88993665 88993706 -70606077 + (TG)n Simple_repeat Simple_repeat 1 41 0 1 1263 413 292 8 70 chr3 88993707 88993836 -70605947 - RSINE1 SINE B4 -8 157 37 1 1263 384 22 0 0 chr3 88993843 88993888 -70605895 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 1263 367 262 167 69 chr3 88993941 88994187 -70605596 - B4 SINE B4 -22 270 1 1 1263 897 212 70 5 chr3 88994210 88994409 -70605374 - B3 SINE B2 -3 213 2 1 1263 413 233 48 10 chr3 88994862 88994966 -70604817 + PB1D7 SINE Alu 10 117 -3 1 1263 457 328 67 0 chr3 88995091 88995225 -70604558 - B1_Mur1 SINE Alu -5 144 2 1 1263 296 219 98 0 chr3 88995388 88995470 -70604313 + RMER5 LTR ERV1 1 90 -444 1 1263 394 304 132 6 chr3 88995508 88995667 -70604116 + RMER5 LTR ERV1 212 390 -144 1 1263 600 65 98 0 chr3 88995646 88995738 -70604045 - B1_Mur3 SINE Alu -21 128 28 1 1263 684 214 71 7 chr3 88995744 88995899 -70603884 + RMER5 LTR ERV1 329 493 -41 1 1263 216 0 0 0 chr3 88996324 88996348 -70603435 + (T)n Simple_repeat Simple_repeat 1 24 0 1 1263 1063 50 7 0 chr3 88996367 88996507 -70603276 + B1_Mus2 SINE Alu 6 146 -1 1 1263 1211 92 40 0 chr3 88996520 88996694 -70603089 - B2_Mm2 SINE B2 -14 181 1 1 1263 478 122 55 11 chr3 88996792 88996883 -70602900 + B1_Mur3 SINE Alu 48 142 -7 1 1263 318 106 0 0 chr3 88996885 88996932 -70602851 + (GAAA)n Simple_repeat Simple_repeat 3 49 0 1 1263 375 23 0 0 chr3 88996960 88997004 -70602779 + (TTTTC)n Simple_repeat Simple_repeat 2 45 0 1 1263 225 83 0 0 chr3 88997006 88997042 -70602741 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 1 1263 438 283 0 9 chr3 88997043 88997150 -70602633 - B1_Mur1 SINE Alu -6 143 38 1 1263 441 0 0 0 chr3 88997182 88997231 -70602552 + (TAGA)n Simple_repeat Simple_repeat 1 49 0 1 1263 438 119 0 0 chr3 88997233 88997300 -70602483 + B2_Mm2 SINE B2 1 67 -128 1 1263 423 0 0 0 chr3 88997300 88997347 -70602436 + (TAAA)n Simple_repeat Simple_repeat 4 50 0 1 1263 228 67 0 0 chr3 88997355 88997385 -70602398 + (TGGA)n Simple_repeat Simple_repeat 3 32 0 1 1263 811 255 31 0 chr3 88997385 88997577 -70602206 - B3 SINE B2 -17 199 2 1 1263 261 0 0 0 chr3 88997582 88997611 -70602172 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 1 1263 518 259 108 0 chr3 88997674 88997813 -70601970 - RSINE1 SINE B4 0 165 12 1 157 855 192 13 109 chr3 88997852 88998091 -70601692 + B3 SINE B2 1 216 0 1 1264 1115 74 0 0 chr3 88998095 88998243 -70601540 + B1_Mus1 SINE Alu 1 148 0 1 1264 189 0 0 0 chr3 88998243 88998264 -70601519 + (TAAAAA)n Simple_repeat Simple_repeat 3 23 0 1 1264 431 260 63 0 chr3 88998279 88998406 -70601377 + B1_Mur1 SINE Alu 2 136 -13 1 1264 666 238 56 12 chr3 88998423 88998616 -70601167 + B3 SINE B2 6 216 0 1 1264 318 159 31 16 chr3 88998641 88998705 -70601078 + ID4_ SINE ID 5 69 -14 1 1264 21 57 0 0 chr3 88998733 88998768 -70601015 + AT_rich Low_complexity Low_complexity 1 35 0 1 1264 361 55 18 18 chr3 88998778 88998833 -70600950 - ORR1A3 LTR MaLR 0 326 272 1 1264 439 193 0 22 chr3 88998834 88998924 -70600859 - PB1D9 SINE Alu 0 120 33 1 1264 1008 99 0 0 chr3 88998927 88999068 -70600715 - ORR1A2 LTR MaLR -41 285 145 1 1264 980 72 29 0 chr3 88999074 88999213 -70600570 - B1_Mus1 SINE Alu 0 148 6 1 1264 1115 81 6 0 chr3 88999218 88999379 -70600404 - ORR1A2 LTR MaLR -165 162 1 1 1264 440 206 29 29 chr3 88999383 88999488 -70600295 - B1_Mur2 SINE Alu -2 147 43 1 1264 312 264 22 0 chr3 88999548 88999639 -70600144 - B3A SINE B2 -66 132 40 1 1264 322 210 190 0 chr3 88999795 88999895 -70599888 + PB1D7 SINE Alu 2 120 0 1 1264 618 242 151 57 chr3 89000853 89001206 -70598577 + MTD LTR MaLR 1 384 -12 1 1264 234 259 0 0 chr3 89001487 89001541 -70598242 + RSINE1 SINE B4 86 139 -26 2 1264 566 242 47 0 chr3 89001592 89001720 -70598063 + B1_Mur1 SINE Alu 3 136 -13 3 1264 531 112 0 0 chr3 89001720 89001800 -70597983 + (TTTC)n Simple_repeat Simple_repeat 4 83 0 4 1264 897 185 0 0 chr3 89001800 89001946 -70597837 - B1_Mus1 SINE Alu 0 148 3 5 1264 195 42 0 0 chr3 89002268 89002292 -70597491 + (CAAAAA)n Simple_repeat Simple_repeat 3 26 0 6 1264 610 215 43 29 chr3 89002355 89002494 -70597289 + B1_Mur1 SINE Alu 6 146 -3 7 1264 198 224 0 0 chr3 89002496 89002545 -70597238 + A-rich Low_complexity Low_complexity 1 49 0 8 1264 664 195 141 6 chr3 89002618 89002788 -70596995 + B3 SINE B2 24 216 0 9 1264 1448 88 16 0 chr3 89002863 89003055 -70596728 + B2_Mm2 SINE B2 1 195 0 1 1264 247 61 0 0 chr3 89003055 89003088 -70596695 + (CAGA)n Simple_repeat Simple_repeat 3 35 0 1 1264 417 86 0 0 chr3 89003088 89003146 -70596637 + (GAAAA)n Simple_repeat Simple_repeat 3 60 0 1 1264 1010 127 7 0 chr3 89003156 89003298 -70596485 + B1_Mus1 SINE Alu 2 144 -4 1 1264 741 23 0 0 chr3 89003298 89003385 -70596398 + (GAA)n Simple_repeat Simple_repeat 2 88 0 1 1264 579 40 0 0 chr3 89003385 89003459 -70596324 + (GGAA)n Simple_repeat Simple_repeat 1 74 0 1 1264 218 179 18 0 chr3 89003465 89003521 -70596262 + GA-rich Low_complexity Low_complexity 2 58 0 1 1264 991 138 14 0 chr3 89003557 89003702 -70596081 + B1_Mus1 SINE Alu 2 148 0 1 1264 486 91 0 0 chr3 89003714 89003791 -70595992 + (GGAA)n Simple_repeat Simple_repeat 2 78 0 1 1264 218 179 18 0 chr3 89003801 89003857 -70595926 + GA-rich Low_complexity Low_complexity 2 58 0 1 1264 245 263 105 0 chr3 89004200 89004276 -70595507 - MIRb SINE MIR -83 185 102 2 1264 204 40 0 0 chr3 89004279 89004304 -70595479 + (T)n Simple_repeat Simple_repeat 1 25 0 2 1264 1288 27 0 0 chr3 89004304 89004451 -70595332 - B1_Mus2 SINE Alu 0 147 1 2 1264 5480 27 3 0 chr3 89004463 89005087 -70594696 - L1Md_F2 LINE L1 0 6582 5957 2 1264 965 28 0 0 chr3 89005088 89005195 -70594588 - U6 snRNA snRNA 0 107 1 2 1264 22 0 0 0 chr3 89005851 89005873 -70593910 + GC_rich Low_complexity Low_complexity 1 22 0 2 1264 832 138 0 35 chr3 89006028 89006171 -70593612 - B1_Mur3 SINE Alu -2 147 10 2 1264 495 271 0 61 chr3 89006171 89006193 -70593590 - ID_B1 SINE B4 0 224 70 2 1264 32 43 0 0 chr3 89006195 89006241 -70593542 + AT_rich Low_complexity Low_complexity 1 46 0 2 1264 404 83 0 0 chr3 89006241 89006301 -70593482 + B2_Mm2 SINE B2 1 60 -135 2 1264 265 0 227 0 chr3 89006293 89006337 -70593446 + B2_Mm1a SINE B2 122 175 -18 3 1264 1496 48 10 31 chr3 89006338 89006532 -70593251 - B2_Mm2 SINE B2 -5 190 1 3 1264 31 0 0 0 chr3 89006535 89006566 -70593217 + AT_rich Low_complexity Low_complexity 1 31 0 3 1264 1631 27 0 21 chr3 89007615 89007804 -70591979 - B2_Mm1t SINE B2 -7 186 2 3 1264 27 0 0 0 chr3 89008401 89008428 -70591355 + AT_rich Low_complexity Low_complexity 1 27 0 3 1264 677 277 103 5 chr3 89008646 89008831 -70590952 - ID_B1 SINE B4 -19 205 3 3 1264 362 215 128 11 chr3 89008881 89008975 -70590808 - B1F SINE Alu -35 114 10 3 1264 448 200 30 0 chr3 89009203 89009303 -70590480 - PB1D9 SINE Alu 0 120 18 3 1264 366 270 70 0 chr3 89010387 89010487 -70589296 - PB1D10 SINE Alu -10 107 1 3 1264 532 275 27 47 chr3 89010507 89010656 -70589127 - B1_Mur2 SINE Alu -2 147 2 3 1264 510 247 141 11 chr3 89010738 89010922 -70588861 - B4A SINE B4 -65 227 20 4 1264 189 0 0 0 chr3 89013583 89013604 -70586179 + (GA)n Simple_repeat Simple_repeat 2 22 0 4 1264 268 322 123 20 chr3 89015241 89015387 -70584396 + MIRc SINE MIR 94 254 -14 4 1264 547 323 0 0 chr3 89015599 89015760 -70584023 + RSINE1 SINE B4 5 165 0 4 1264 629 198 50 0 chr3 89016026 89016147 -70583636 - B1_Mur4 SINE Alu -21 129 3 4 1264 670 231 28 0 chr3 89016152 89016295 -70583488 - ID_B1 SINE B4 0 224 78 4 1264 240 299 41 0 chr3 89017481 89017578 -70582205 - MIRc SINE MIR -159 109 9 4 1264 25 0 0 0 chr3 89018647 89018672 -70581111 + AT_rich Low_complexity Low_complexity 1 25 0 4 1264 219 329 0 0 chr3 89019024 89019109 -70580674 + C-rich Low_complexity Low_complexity 1 85 0 4 1264 1162 55 14 0 chr3 89020324 89020469 -70579314 + B1_Mus2 SINE Alu 1 147 0 4 1264 270 73 0 0 chr3 89020469 89020510 -70579273 + (A)n Simple_repeat Simple_repeat 1 41 0 5 1264 253 250 84 36 chr3 89021170 89021253 -70578530 - PB1D9 SINE Alu -1 119 33 5 1264 747 182 14 14 chr3 89021354 89021499 -70578284 + B1_Mus1 SINE Alu 3 147 -1 5 1264 363 226 62 0 chr3 89024264 89024372 -70575411 + MIRc SINE MIR 66 182 -86 5 1264 910 131 286 0 chr3 89024375 89024543 -70575240 + B3 SINE B2 1 216 0 5 1264 1470 69 37 0 chr3 89024674 89024862 -70574921 - B2_Mm2 SINE B2 0 195 1 5 1264 399 154 282 0 chr3 89025596 89025706 -70574077 + B3 SINE B2 71 211 -5 5 1264 198 0 0 0 chr3 89025711 89025733 -70574050 + (CAAAA)n Simple_repeat Simple_repeat 1 22 0 5 1264 343 83 0 0 chr3 89025733 89025781 -70574002 + B2_Mm2 SINE B2 11 58 -137 5 1264 438 211 126 0 chr3 89025851 89025946 -70573837 + PB1D10 SINE Alu 10 116 -1 5 1264 1243 61 0 0 chr3 89025948 89026095 -70573688 + B1_Mus2 SINE Alu 1 147 0 6 1264 662 293 0 52 chr3 89026112 89026285 -70573498 + RSINE1 SINE B4 1 164 -1 6 1264 309 295 78 26 chr3 89026287 89026318 -70573465 + L1MEg LINE L1 3012 3042 -3104 6 1264 974 139 250 0 chr3 89026318 89026490 -70573293 + B3 SINE B2 2 216 0 6 1264 345 251 24 83 chr3 89026490 89026611 -70573172 + L1MEg LINE L1 2019 2128 -4114 6 1264 207 0 0 0 chr3 89029793 89029816 -70569967 + (GGGAA)n Simple_repeat Simple_repeat 1 23 0 6 1264 23 54 0 0 chr3 89031020 89031057 -70568726 + GC_rich Low_complexity Low_complexity 1 37 0 6 1264 340 304 69 0 chr3 89033374 89033476 -70566307 + PB1D7 SINE Alu 2 110 -10 6 1264 214 242 10 71 chr3 89033598 89033696 -70566087 + T-rich Low_complexity Low_complexity 3 94 0 6 1264 516 16 0 0 chr3 89036614 89036675 -70563108 + (CA)n Simple_repeat Simple_repeat 2 62 0 6 1264 1226 54 0 0 chr3 89041043 89041190 -70558593 - B1_Mus2 SINE Alu 0 147 1 6 1264 375 275 99 64 chr3 89041201 89041372 -70558411 - MIR SINE MIR -55 207 31 7 1264 480 286 60 12 chr3 89042010 89042176 -70557607 + MIR3 SINE MIR 24 197 -11 7 1264 1182 81 0 0 chr3 89043779 89043927 -70555856 - B1_Mus1 SINE Alu 0 148 1 7 1264 1079 195 30 10 chr3 89043943 89044145 -70555638 - B3 SINE B2 -8 208 3 7 1264 395 211 147 0 chr3 89044166 89044261 -70555522 - ID_B1 SINE B4 -12 212 104 7 1264 289 288 43 43 chr3 89044261 89044282 -70555501 - PB1 SINE Alu -11 116 1 7 1264 37 19 0 18 chr3 89044301 89044326 -70555457 + AT_rich Low_complexity Low_complexity 1 25 0 7 1264 903 130 265 0 chr3 89044326 89044488 -70555295 - B3 SINE B2 -10 206 2 7 1264 37 19 0 18 chr3 89044488 89044517 -70555266 + AT_rich Low_complexity Low_complexity 1 29 0 7 1264 266 295 63 94 chr3 89044519 89044710 -70555073 + B3A SINE B2 1 185 -13 7 1264 853 169 54 6 chr3 89044744 89044911 -70554872 - B2_Mm2 SINE B2 -19 176 2 8 1264 21 36 0 0 chr3 89044923 89044951 -70554832 + AT_rich Low_complexity Low_complexity 1 28 0 8 1264 818 234 32 11 chr3 89045056 89045246 -70554537 - B3A SINE B2 -3 195 2 8 1264 443 284 9 0 chr3 89046781 89046890 -70552893 - PB1D10 SINE Alu -6 111 2 8 1264 199 333 29 68 chr3 89046902 89047005 -70552778 - MIRc SINE MIR -64 204 106 8 1264 427 301 0 28 chr3 89047044 89047150 -70552633 + PB1D10 SINE Alu 1 103 -14 8 1264 302 211 276 98 chr3 89047169 89047332 -70552451 - B3A SINE B2 -5 193 2 8 1264 279 173 0 0 chr3 89047345 89047397 -70552386 + (CA)n Simple_repeat Simple_repeat 1 52 0 8 1264 225 106 62 21 chr3 89049090 89049138 -70550645 + GA-rich Low_complexity Low_complexity 4 53 0 8 1264 207 0 0 0 chr3 89051230 89051253 -70548530 + (GGGGA)n Simple_repeat Simple_repeat 1 23 0 8 1264 781 244 40 30 chr3 89051581 89051780 -70548003 - ID_B1 SINE B4 -22 202 2 9 1264 813 184 20 20 chr3 89052102 89052252 -70547531 + B1_Mur4 SINE Alu 1 150 0 9 1264 397 244 27 91 chr3 89052406 89052569 -70547214 - B1F1 SINE Alu 0 311 8 9 1264 835 168 21 0 chr3 89052747 89052890 -70546893 - B1_Mur3 SINE Alu -2 147 2 9 1264 1444 79 16 0 chr3 89053187 89053376 -70546407 - B2_Mm2 SINE B2 -3 192 1 9 1264 186 43 0 0 chr3 89053840 89053863 -70545920 + (TG)n Simple_repeat Simple_repeat 1 23 0 9 1264 219 169 16 63 chr3 89055806 89055869 -70543914 + (CAGAGA)n Simple_repeat Simple_repeat 3 62 0 9 1264 702 229 145 25 chr3 89056675 89056917 -70542866 - B4A SINE B4 -20 272 2 9 1264 187 31 62 0 chr3 89057189 89057221 -70542562 + (CCA)n Simple_repeat Simple_repeat 3 36 0 9 1264 984 80 14 7 chr3 89057668 89057806 -70541977 - B1_Mm SINE Alu -8 139 1 9 1264 829 261 5 28 chr3 89057839 89058052 -70541731 - B3 SINE B2 -7 209 2 1 1264 670 295 33 5 chr3 89058059 89058270 -70541513 - ID_B1 SINE B4 -7 217 1 1 1264 1514 37 5 0 chr3 89058433 89058620 -70541163 + B2_Mm1a SINE B2 1 188 -5 1 1264 416 117 0 13 chr3 89058669 89058747 -70541036 + (TTTTTG)n Simple_repeat Simple_repeat 6 82 0 1 1264 979 123 7 0 chr3 89058747 89058893 -70540890 - B1_Mus2 SINE Alu 0 147 1 1 1264 528 291 35 71 chr3 89059020 89059275 -70540508 + B4A SINE B4 1 246 -46 1 1264 1299 69 26 26 chr3 89059290 89059484 -70540299 - B2_Mm2 SINE B2 -1 194 1 1 1264 198 176 0 0 chr3 89059492 89059543 -70540240 + T-rich Low_complexity Low_complexity 1 51 0 1 1264 433 0 35 0 chr3 89059578 89059635 -70540148 + (TG)n Simple_repeat Simple_repeat 1 59 0 1 1264 297 0 0 0 chr3 89059741 89059774 -70540009 + (CA)n Simple_repeat Simple_repeat 2 34 0 1 1264 243 0 0 0 chr3 89059874 89059901 -70539882 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 1264 1085 65 0 0 chr3 89059901 89060039 -70539744 - B1_Mus1 SINE Alu -9 139 2 1 1264 588 296 41 67 chr3 89060049 89060317 -70539466 + MLT2D LTR ERVL 153 413 -1 1 1264 1172 84 6 0 chr3 89060448 89060615 -70539168 - B2_Mm2 SINE B2 -27 168 1 1 1264 298 301 37 49 chr3 89060638 89060802 -70538981 - RSINE1 SINE B4 -1 164 3 1 1264 271 395 0 16 chr3 89060803 89060924 -70538859 - B1F1 SINE Alu 0 149 31 1 1264 292 267 13 13 chr3 89061051 89061127 -70538656 - BC1_Mm scRNA scRNA -63 89 14 1 1264 239 322 42 53 chr3 89061150 89061245 -70538538 - PB1 SINE Alu -7 120 27 1 1264 2044 206 52 53 chr3 89061293 89061897 -70537886 + RLTR18 LTR ERVK 16 532 -84 1 1264 302 219 16 0 chr3 89062394 89062458 -70537325 - tRNA-Ala-GCY_ tRNA tRNA -6 69 5 1 1264 647 229 83 7 chr3 89062482 89062654 -70537129 - B3 SINE B2 -1 215 19 1 1264 784 193 7 0 chr3 89062688 89062833 -70536950 + B1_Mur2 SINE Alu 1 146 -3 1 1264 758 238 38 75 chr3 89062843 89063029 -70536754 - B3A SINE B2 -16 179 1 1 1264 217 312 9 44 chr3 89063160 89063274 -70536509 + L2c LINE L2 3022 3131 -256 1 1264 744 169 244 0 chr3 89063532 89063704 -70536079 - B3 SINE B2 -2 214 1 1 1264 1230 92 0 0 chr3 89063735 89063909 -70535874 + (TCC)n Simple_repeat Simple_repeat 2 175 0 1 1264 589 228 13 46 chr3 89063909 89064061 -70535722 - B1_Mur3 SINE Alu 0 149 3 1 1264 1302 157 11 36 chr3 89064103 89064380 -70535403 - RLTR28 LTR ERVL -12 512 243 1 1264 704 88 104 67 chr3 89064380 89064514 -70535269 - B1_Mur4 SINE Alu 0 150 12 1 1264 1430 157 12 0 chr3 89064520 89064775 -70535008 - RLTR28 LTR ERVL -266 258 1 1 1264 661 222 101 20 chr3 89064795 89064807 -70534976 - B3 SINE B2 0 216 205 1 1264 1388 68 26 5 chr3 89064807 89064998 -70534785 - B2_Mm2 SINE B2 0 195 1 1 1264 661 222 101 20 chr3 89064998 89065183 -70534600 - B3 SINE B2 -12 204 3 1 1264 1268 40 61 28 chr3 89065434 89065615 -70534168 - B2_Mm2 SINE B2 -7 188 2 1 1264 2103 133 38 43 chr3 89065656 89066050 -70533733 - RMER10B LTR ERVL 0 398 7 1 1264 490 228 151 97 chr3 89066055 89066240 -70533543 - B3 SINE B2 -21 195 1 1 1264 320 326 112 35 chr3 89066764 89066934 -70532849 - HAL1 LINE L1 -3 2504 2319 1 1264 195 42 0 0 chr3 89066934 89066958 -70532825 + (TTCC)n Simple_repeat Simple_repeat 1 24 0 1 1264 320 326 112 35 chr3 89066958 89066984 -70532799 - HAL1 LINE L1 -189 2318 2293 1 1264 506 103 0 0 chr3 89067139 89067217 -70532566 - B1_Mus1 SINE Alu -69 79 2 1 1264 287 202 0 125 chr3 89067217 89067235 -70532548 - MT2B LTR ERVL -366 235 152 1 1264 459 0 0 0 chr3 89067385 89067436 -70532347 + (GGAA)n Simple_repeat Simple_repeat 3 53 0 1 1264 748 172 196 22 chr3 89067448 89067632 -70532151 + B3 SINE B2 1 216 0 1 1264 288 0 0 0 chr3 89067640 89067672 -70532111 + (GA)n Simple_repeat Simple_repeat 1 32 0 1 1264 590 241 43 31 chr3 89067672 89067835 -70531948 + Lx9 LINE L1 7155 7319 -325 1 1264 733 203 7 0 chr3 89067847 89067985 -70531798 + B1_Mus2 SINE Alu 9 147 0 1 1264 541 311 61 0 chr3 89068014 89068178 -70531605 + B3 SINE B2 40 213 -3 1 1264 243 175 161 12 chr3 89068188 89068269 -70531514 + Lx9 LINE L1 7532 7624 -20 1 1264 813 135 28 14 chr3 89068438 89068581 -70531202 + B1_Mur3 SINE Alu 5 149 0 1 1264 1006 187 39 15 chr3 89068718 89068924 -70530859 - B3 SINE B2 -5 211 1 1 1264 237 296 91 0 chr3 89068936 89069024 -70530759 + LTR65 LTR ERV1 274 369 -300 1 1264 234 180 0 0 chr3 89069008 89069058 -70530725 - B3 SINE B2 0 216 167 1 1264 238 268 69 11 chr3 89069136 89069223 -70530560 - PB1D10 SINE Alu 0 117 26 1 1264 589 281 0 32 chr3 89069275 89069433 -70530350 + ID_B1 SINE B4 69 221 -3 1 1264 614 199 119 76 chr3 89069446 89069631 -70530152 + B3A SINE B2 3 195 -3 1 1264 918 177 193 0 chr3 89069737 89069918 -70529865 - B3 SINE B2 0 216 1 1 1264 210 146 0 47 chr3 89070122 89070165 -70529618 + ID2 SINE ID 16 56 -27 1 1264 222 231 58 0 chr3 89071158 89071210 -70528573 - PB1D10 SINE Alu 0 117 63 1 1264 244 284 35 97 chr3 89071372 89071485 -70528298 - B1F SINE Alu -15 134 29 1 1264 1097 82 7 0 chr3 89071578 89071724 -70528059 - B1_Mus1 SINE Alu -1 147 1 1 1264 256 260 0 83 chr3 89071781 89071795 -70527988 + ID_B1 SINE B4 148 223 0 1 1264 433 101 14 0 chr3 89071795 89071864 -70527919 + B1_Mus2 SINE Alu 78 147 0 1 1264 1325 41 0 6 chr3 89071877 89072047 -70527736 - B2_Mm2 SINE B2 -25 170 2 1 1264 523 231 26 0 chr3 89075255 89075372 -70524411 - PB1D7 SINE Alu 0 120 1 1 1264 232 263 26 13 chr3 89075379 89075456 -70524327 - ID2 SINE ID -3 80 3 1 1264 1139 54 0 20 chr3 89077065 89077215 -70522568 - B1_Mus1 SINE Alu -1 147 1 1 1264 720 209 36 0 chr3 89077232 89077371 -70522412 - B1_Mur2 SINE Alu -1 148 5 1 1264 355 292 24 96 chr3 89077385 89077510 -70522273 - B4A SINE B4 -150 142 27 1 1264 647 194 8 39 chr3 89077530 89077659 -70522124 - ID_B1 SINE B4 -8 216 92 1 1264 234 91 0 0 chr3 89077659 89077692 -70522091 + (TCCC)n Simple_repeat Simple_repeat 4 36 0 1 1264 573 254 56 14 chr3 89077710 89077854 -70521929 - RSINE1 SINE B4 -11 154 5 1 1264 432 0 0 0 chr3 89077873 89077921 -70521862 + (TTTA)n Simple_repeat Simple_repeat 1 48 0 1 1264 1193 50 13 0 chr3 89077921 89078080 -70521703 - B2_Mm2 SINE B2 -34 161 1 1 1264 318 274 0 78 chr3 89078088 89078203 -70521580 - PB1D10 SINE Alu -8 109 4 1 1264 1185 102 5 36 chr3 89078273 89078443 -70521340 + B2_Mm2 SINE B2 2 169 -26 1 1264 1171 54 0 0 chr3 89078443 89078590 -70521193 - B1_Mus1 SINE Alu 0 148 2 1 1264 1185 102 5 36 chr3 89078590 89078613 -70521170 + B2_Mm2 SINE B2 170 189 -6 1 1264 1166 96 39 0 chr3 89078623 89078801 -70520982 + B2_Mm2 SINE B2 1 185 -10 1 1264 418 237 109 22 chr3 89078811 89078949 -70520834 - B3 SINE B2 -6 210 61 1 1264 1008 97 39 0 chr3 89079614 89079768 -70520015 + B2_Mm2 SINE B2 2 161 -34 1 1264 192 281 0 17 chr3 89085171 89085229 -70514554 - L2b LINE L2 -13 3362 3306 1 1264 280 41 40 20 chr3 89086686 89086736 -70513047 + (TTTG)n Simple_repeat Simple_repeat 2 52 0 1 1264 1180 28 0 0 chr3 89086738 89086879 -70512904 - B1_Mus2 SINE Alu -6 141 1 1 1264 800 156 7 22 chr3 89086885 89087023 -70512760 - B1_Mur2 SINE Alu -1 148 13 1 1264 348 206 0 0 chr3 89087024 89087097 -70512686 + B3 SINE B2 1 73 -143 1 1264 1339 72 5 25 chr3 89087328 89087526 -70512257 - B2_Mm2 SINE B2 0 195 2 1 1264 189 74 0 0 chr3 89087537 89087564 -70512219 + (T)n Simple_repeat Simple_repeat 1 27 0 1 1264 689 70 0 48 chr3 89087565 89087670 -70512113 - B1_Mus2 SINE Alu 0 147 48 1 1264 240 31 0 0 chr3 89087667 89087699 -70512084 + B1_Mus1 SINE Alu 30 61 -87 1 1264 422 248 50 57 chr3 89088337 89088478 -70511305 - B1F SINE Alu 0 149 10 1 1264 231 36 0 0 chr3 89090002 89090030 -70509753 + (TG)n Simple_repeat Simple_repeat 2 29 0 1 1264 28 29 0 0 chr3 89090107 89090142 -70509641 + AT_rich Low_complexity Low_complexity 1 35 0 1 1264 471 168 52 21 chr3 89090173 89090270 -70509513 - B3A SINE B2 -98 100 1 1 1264 274 380 68 21 chr3 89090486 89090677 -70509106 - MIR SINE MIR -50 212 13 1 1264 216 97 0 0 chr3 89090755 89090786 -70508997 + (TG)n Simple_repeat Simple_repeat 2 32 0 1 1264 477 0 0 0 chr3 89091267 89091320 -70508463 + (TG)n Simple_repeat Simple_repeat 1 53 0 1 1264 196 263 219 41 chr3 89092158 89092281 -70507502 + MIRb SINE MIR 93 237 -31 1 1264 816 184 0 0 chr3 89093500 89093636 -70506147 + B1_Mur2 SINE Alu 2 137 -12 1 1264 743 108 59 44 chr3 89093659 89093794 -70505989 - B2_Mm2 SINE B2 -56 139 3 1 1264 349 149 15 15 chr3 89093846 89093914 -70505869 + B3A SINE B2 6 73 -125 1 1264 351 0 0 0 chr3 89093982 89094021 -70505762 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 1264 1154 80 67 17 chr3 89094058 89094236 -70505547 + B2_Mm2 SINE B2 1 187 -8 1 1264 1069 45 8 0 chr3 89094245 89094379 -70505404 + B1_Mus2 SINE Alu 1 135 -12 1 1264 371 223 117 0 chr3 89094407 89094510 -70505273 - MER2 DNA MER2_type -221 124 10 1 1264 198 143 0 0 chr3 89095860 89095895 -70503888 + (CA)n Simple_repeat Simple_repeat 1 35 0 1 1264 243 203 0 0 chr3 89096191 89096250 -70503533 + GA-rich Low_complexity Low_complexity 1 59 0 2 1264 386 271 0 78 chr3 89096573 89096689 -70503094 - MER53 DNA hAT -4 189 83 2 1264 266 333 151 55 chr3 89096710 89096772 -70503011 - RSINE1 SINE B4 -4 161 107 2 1264 675 188 80 0 chr3 89096772 89096910 -70502873 + B1_Mur2 SINE Alu 1 149 0 2 1264 266 333 151 55 chr3 89096910 89096993 -70502790 - RSINE1 SINE B4 -59 106 2 2 1264 569 234 0 49 chr3 89097816 89097960 -70501823 - B1F SINE Alu -2 147 11 2 1264 239 281 16 0 chr3 89098526 89098590 -70501193 - ID4_ SINE ID -11 72 8 2 1264 359 298 0 9 chr3 89098630 89098735 -70501048 - ID_B1 SINE B4 -18 206 103 2 1264 542 274 12 31 chr3 89098753 89098915 -70500868 + RLTR1D LTR ERV1 60 218 -387 2 1264 26 30 0 0 chr3 89098953 89098986 -70500797 + AT_rich Low_complexity Low_complexity 1 33 0 2 1264 303 291 125 10 chr3 89099010 89099114 -70500669 - PB1D7 SINE Alu -4 116 1 2 1264 27 0 0 0 chr3 89099130 89099157 -70500626 + AT_rich Low_complexity Low_complexity 1 27 0 2 1264 961 111 65 22 chr3 89099157 89099342 -70500441 + B2_Mm2 SINE B2 2 194 -1 2 1264 241 118 18 73 chr3 89100167 89100222 -70499561 + RSINE1 SINE B4 71 122 -43 2 1264 1098 74 0 0 chr3 89100220 89100369 -70499414 - B2_Mm2 SINE B2 -46 149 1 2 1264 334 318 0 9 chr3 89100471 89100582 -70499201 - L1MC LINE L1 -2080 5802 5693 2 1264 684 205 0 0 chr3 89100583 89100749 -70499034 + (CA)n Simple_repeat Simple_repeat 1 166 0 2 1264 878 239 42 8 chr3 89100863 89101103 -70498680 - L1MC LINE L1 -2338 5544 5297 2 1264 307 284 39 0 chr3 89101109 89101236 -70498547 + HAL1 LINE L1 2040 2171 -336 2 1264 239 279 12 37 chr3 89101482 89101564 -70498219 - ID4 SINE ID 0 83 4 2 1264 204 40 0 0 chr3 89101735 89101760 -70498023 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 2 1264 228 242 60 15 chr3 89101760 89101827 -70497956 - ID4_ SINE ID -4 79 10 2 1264 721 150 37 8 chr3 89101890 89102024 -70497759 - B1_Mur2 SINE Alu 0 149 12 2 1264 547 295 59 23 chr3 89102057 89102268 -70497515 - B3A SINE B2 -1 215 1 2 1264 1111 82 0 0 chr3 89102317 89102464 -70497319 + B1_Mus2 SINE Alu 1 147 0 2 1264 734 224 0 13 chr3 89102581 89102730 -70497053 - B1_Mur1 SINE Alu 0 149 3 2 1264 347 298 41 81 chr3 89102737 89102934 -70496849 - B2_Mm2 SINE B2 -6 189 1 2 1264 461 299 83 60 chr3 89103050 89103104 -70496679 + L1MEc LINE L1 55 105 -6295 2 1264 923 137 7 0 chr3 89103104 89103250 -70496533 + B1_Mus1 SINE Alu 1 147 -1 2 1264 461 299 83 60 chr3 89103250 89103593 -70496190 + L1MEc LINE L1 106 461 -5939 2 1264 216 67 0 0 chr3 89103923 89103953 -70495830 + (TTA)n Simple_repeat Simple_repeat 2 31 0 2 1264 455 240 10 0 chr3 89103960 89104056 -70495727 - PB1 SINE Alu -14 113 17 2 1264 673 199 14 7 chr3 89104062 89104211 -70495572 + LTR41 LTR ERVL 617 795 0 2 1264 241 238 185 12 chr3 89104336 89104417 -70495366 + ID_B1 SINE B4 114 208 -16 2 1264 910 154 27 16 chr3 89104525 89104710 -70495073 + B2_Mm2 SINE B2 2 188 -7 2 1264 756 177 0 8 chr3 89104804 89104935 -70494848 - B3 SINE B2 -86 130 1 2 1264 414 151 0 0 chr3 89105013 89105086 -70494697 + (CA)n Simple_repeat Simple_repeat 2 74 0 2 1264 324 310 50 10 chr3 89105096 89105197 -70494586 + PB1D10 SINE Alu 1 105 -12 2 1264 378 91 0 0 chr3 89105197 89105252 -70494531 + (TC)n Simple_repeat Simple_repeat 2 56 0 2 1264 1091 33 140 25 chr3 89105258 89105415 -70494368 - B2_Mm2 SINE B2 -19 176 2 2 1264 866 170 7 0 chr3 89105551 89105692 -70494091 + B3 SINE B2 1 142 -74 2 1264 519 272 67 13 chr3 89105689 89105838 -70493945 + B3 SINE B2 55 211 -5 2 1264 501 230 115 0 chr3 89105933 89106072 -70493711 - RSINE1 SINE B4 -8 157 3 2 1264 249 180 0 0 chr3 89106201 89106251 -70493532 + (TG)n Simple_repeat Simple_repeat 2 51 0 2 1264 255 125 0 0 chr3 89106295 89106335 -70493448 + (TTC)n Simple_repeat Simple_repeat 2 41 0 2 1264 986 55 8 0 chr3 89106353 89106481 -70493302 + B1_Mus2 SINE Alu 1 129 -18 2 1264 202 0 91 0 chr3 89106481 89106514 -70493269 + (TTTTG)n Simple_repeat Simple_repeat 2 37 0 2 1264 963 101 7 0 chr3 89106514 89106652 -70493131 - B1_Mus1 SINE Alu -9 139 1 2 1264 333 292 27 40 chr3 89107043 89107193 -70492590 + L1MEc LINE L1 1692 1839 -4561 2 1264 789 111 0 31 chr3 89107245 89107375 -70492408 - B1_Mur1 SINE Alu 0 149 24 2 1264 270 0 0 0 chr3 89107417 89107447 -70492336 + (CAAA)n Simple_repeat Simple_repeat 3 32 0 2 1264 482 269 141 11 chr3 89107457 89107641 -70492142 + B3 SINE B2 1 208 -8 2 1264 1261 91 32 0 chr3 89107989 89108176 -70491607 + B2_Mm2 SINE B2 2 194 -1 2 1264 272 172 17 0 chr3 89108176 89108234 -70491549 + GA-rich Low_complexity Low_complexity 1 59 0 2 1264 418 278 75 8 chr3 89108825 89108959 -70490824 - ID_B1 SINE B4 0 224 82 2 1264 348 24 0 0 chr3 89110648 89110689 -70489094 + (TG)n Simple_repeat Simple_repeat 1 41 0 2 1264 464 0 18 0 chr3 89110689 89110744 -70489039 + (GA)n Simple_repeat Simple_repeat 1 57 0 2 1264 293 269 86 0 chr3 89110934 89111027 -70488756 + PB1D10 SINE Alu 1 101 -16 2 1264 578 228 281 0 chr3 89111044 89111158 -70488625 + B3 SINE B2 1 159 -57 2 1264 261 0 0 0 chr3 89111158 89111187 -70488596 + (CA)n Simple_repeat Simple_repeat 2 30 0 2 1264 578 228 281 0 chr3 89111187 89111239 -70488544 + B3 SINE B2 160 213 -3 2 1264 1307 99 16 5 chr3 89111268 89111461 -70488322 + B2_Mm2 SINE B2 1 195 0 2 1264 720 83 64 0 chr3 89111474 89111583 -70488200 + B1_Mur4 SINE Alu 1 116 -34 2 1264 201 176 0 0 chr3 89111583 89111617 -70488166 + (TAAA)n Simple_repeat Simple_repeat 3 36 0 2 1264 444 303 20 27 chr3 89111621 89111767 -70488016 + ID_B1 SINE B4 80 224 0 2 1264 261 168 19 65 chr3 89111771 89111810 -70487973 + (CAAA)n Simple_repeat Simple_repeat 3 39 0 2 1264 517 205 141 8 chr3 89111810 89111938 -70487845 + B1_Mur2 SINE Alu 4 148 -1 2 1264 261 168 19 65 chr3 89111938 89112006 -70487777 + (CAAA)n Simple_repeat Simple_repeat 4 68 0 2 1264 482 155 0 33 chr3 89112006 89112126 -70487657 + GA-rich Low_complexity Low_complexity 3 118 0 2 1264 279 104 0 0 chr3 89112313 89112361 -70487422 + (CTGGGG)n Simple_repeat Simple_repeat 3 50 0 2 1264 667 325 64 38 chr3 89112753 89113095 -70486688 + MTD LTR MaLR 1 351 -68 2 1264 240 182 36 0 chr3 89113120 89113175 -70486608 + CT-rich Low_complexity Low_complexity 4 60 0 2 1264 1031 142 0 0 chr3 89113176 89113324 -70486459 - B1_Mur3 SINE Alu -1 148 1 2 1264 338 236 165 75 chr3 89113336 89113469 -70486314 + MTE2a LTR MaLR 205 349 -30 2 1264 214 29 57 0 chr3 89113470 89113505 -70486278 + (TTTTTG)n Simple_repeat Simple_repeat 6 42 0 2 1264 197 282 153 0 chr3 89113691 89113776 -70486007 + MIR SINE MIR 51 148 -60 2 1264 1353 79 40 0 chr3 89113780 89113957 -70485826 + B2_Mm2 SINE B2 2 185 -10 2 1264 216 330 18 91 chr3 89114107 89114217 -70485566 - B4 SINE B4 -177 115 14 2 1264 608 232 97 43 chr3 89114305 89114512 -70485271 + URR1B DNA MER1_type 1 218 -7 2 1264 797 137 113 15 chr3 89114589 89114722 -70485061 + B1_Mus1 SINE Alu 2 147 -1 2 1264 210 37 0 0 chr3 89114726 89114753 -70485030 + (CAA)n Simple_repeat Simple_repeat 2 28 0 2 1264 457 234 19 0 chr3 89114789 89114896 -70484887 - RSINE1 SINE B4 -36 129 21 2 1264 2094 183 46 0 chr3 89114909 89115276 -70484507 + ORR1C2 LTR MaLR 1 384 0 2 1264 266 0 29 0 chr3 89115542 89115576 -70484207 + (TG)n Simple_repeat Simple_repeat 1 35 0 2 1264 265 24 48 0 chr3 89115611 89115653 -70484130 + (TTG)n Simple_repeat Simple_repeat 2 45 0 2 1264 1119 72 0 0 chr3 89115653 89115791 -70483992 - B1_Mus1 SINE Alu -9 139 2 2 1264 2448 153 42 15 chr3 89115818 89116228 -70483555 - MTC LTR MaLR 0 421 1 2 1264 295 179 0 35 chr3 89116257 89116315 -70483468 - MTC LTR MaLR 0 421 366 2 1264 198 0 0 0 chr3 89116318 89116340 -70483443 + (CA)n Simple_repeat Simple_repeat 1 22 0 2 1264 790 160 0 0 chr3 89116344 89116469 -70483314 + B1_Mus1 SINE Alu 12 136 -12 2 1264 2399 153 0 17 chr3 89116446 89116472 -70483311 - MTC LTR MaLR -22 399 375 2 1264 243 0 0 0 chr3 89116472 89116499 -70483284 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2 1264 2399 153 0 17 chr3 89116499 89116878 -70482905 - MTC LTR MaLR -47 374 1 2 1264 387 0 0 0 chr3 89116900 89116943 -70482840 + (CA)n Simple_repeat Simple_repeat 1 43 0 2 1264 212 336 115 0 chr3 89116959 89117072 -70482711 - RSINE1 SINE B4 -37 128 3 2 1264 336 286 36 11 chr3 89117072 89117178 -70482605 - PB1D10 SINE Alu -37 111 2 2 1264 527 252 0 9 chr3 89117419 89117527 -70482256 - PB1D7 SINE Alu -13 107 1 2 1264 1103 242 131 5 chr3 89117754 89118128 -70481655 - Charlie4a DNA MER1_type -87 421 1 2 1264 260 313 48 0 chr3 89118177 89118260 -70481523 - MIRb SINE MIR -94 174 88 2 1264 21 36 0 0 chr3 89119536 89119564 -70480219 + GC_rich Low_complexity Low_complexity 1 28 0 2 1264 519 90 0 0 chr3 89121167 89121245 -70478538 + (TC)n Simple_repeat Simple_repeat 2 79 0 2 1264 266 317 0 0 chr3 89123908 89123990 -70475793 + GA-rich Low_complexity Low_complexity 1 82 0 2 1264 225 174 0 21 chr3 89124117 89124164 -70475619 + L2c LINE L2 3339 3384 -3 2 1264 417 39 0 0 chr3 89125950 89126001 -70473782 + (TG)n Simple_repeat Simple_repeat 1 51 0 2 1264 246 143 0 0 chr3 89126692 89126741 -70473042 + (CAG)n Simple_repeat Simple_repeat 1 49 0 2 1264 183 139 0 0 chr3 89126744 89126780 -70473003 + (CCG)n Simple_repeat Simple_repeat 2 37 0 2 1264 625 250 0 35 chr3 89127356 89127497 -70472286 + B1_Mur1 SINE Alu 2 137 -12 2 1264 429 20 0 0 chr3 89128469 89128519 -70471264 + (CCCCAG)n Simple_repeat Simple_repeat 3 52 0 3 1264 180 0 0 0 chr3 89128628 89128648 -70471135 + (T)n Simple_repeat Simple_repeat 1 20 0 3 1264 216 254 149 0 chr3 89128688 89128755 -70471028 + ID4_ SINE ID 5 81 -2 3 19 623 241 8 17 chr3 89128889 89129035 -70470748 + B3A SINE B2 4 152 -43 3 1265 273 29 0 0 chr3 89129035 89129069 -70470714 + (CA)n Simple_repeat Simple_repeat 1 34 0 3 1265 424 246 76 92 chr3 89129069 89129106 -70470677 + B2_Mm2 SINE B2 153 184 -11 3 1265 489 181 133 0 chr3 89129616 89129721 -70470062 - B1_Mur2 SINE Alu -2 147 29 3 1265 1230 49 0 0 chr3 89129721 89129865 -70469918 - B1_Mus1 SINE Alu 0 148 5 3 1265 296 309 22 115 chr3 89129992 89130175 -70469608 - MER112 DNA MER1_type -2 259 94 3 1265 1352 172 0 9 chr3 89130189 89130406 -70469377 + B3 SINE B2 1 215 -1 3 1265 891 206 0 0 chr3 89130415 89130561 -70469222 - B1_Mur2 SINE Alu -1 148 3 3 1265 306 0 0 0 chr3 89130565 89130599 -70469184 + (TTTG)n Simple_repeat Simple_repeat 3 36 0 3 1265 820 134 22 0 chr3 89130599 89130733 -70469050 - B1_Mur3 SINE Alu -4 145 9 3 1265 370 239 62 103 chr3 89130603 89130748 -70469035 - B4 SINE B4 -74 218 80 3 1265 673 225 29 7 chr3 89130754 89130893 -70468890 + ID_B1 SINE B4 81 222 -2 3 1265 312 275 43 21 chr3 89131907 89132000 -70467783 + MIRc SINE MIR 103 197 -71 3 1265 526 218 82 0 chr3 89132265 89132375 -70467408 + PB1D9 SINE Alu 1 119 -1 3 1265 357 24 0 0 chr3 89133201 89133243 -70466540 + (GA)n Simple_repeat Simple_repeat 1 42 0 3 1265 343 98 98 0 chr3 89133338 89133403 -70466380 - B1_Mus2 SINE Alu -46 71 5 3 1265 292 256 77 0 chr3 89133403 89133416 -70466367 - ID_B1 SINE B4 -72 152 69 3 1265 180 0 0 0 chr3 89133610 89133630 -70466153 + (TTTA)n Simple_repeat Simple_repeat 3 22 0 3 1265 464 127 0 0 chr3 89133630 89133701 -70466082 - B1_Mus2 SINE Alu -12 135 65 3 1265 411 113 0 0 chr3 89133711 89133773 -70466010 + (TTTTC)n Simple_repeat Simple_repeat 3 64 0 3 1265 1235 54 0 0 chr3 89133791 89133938 -70465845 - B1_Mus1 SINE Alu 0 148 2 3 1265 243 336 53 0 chr3 89134381 89134494 -70465289 + MLT1G3 LTR MaLR 349 467 -128 3 1265 420 303 6 72 chr3 89137356 89137523 -70462260 - RSINE1 SINE B4 -3 162 7 3 1265 451 152 104 9 chr3 89137557 89137663 -70462120 - PB1D7 SINE Alu 0 120 5 3 1265 394 200 0 153 chr3 89139610 89139734 -70460049 - PB1D10 SINE Alu 0 117 13 3 1265 304 171 86 0 chr3 89140098 89140168 -70459615 - PB1D10 SINE Alu 0 117 42 3 1265 257 331 52 105 chr3 89140814 89140986 -70458797 + L2c LINE L2 3224 3386 -1 3 1265 392 274 34 20 chr3 89141158 89141307 -70458476 - MIRb SINE MIR -57 211 61 3 1265 517 217 130 139 chr3 89142230 89142460 -70457323 - B4A SINE B4 -56 236 9 3 1265 556 240 8 16 chr3 89142480 89142607 -70457176 - B1F1 SINE Alu -1 148 23 3 1265 342 0 0 0 chr3 89142842 89142880 -70456903 + (CA)n Simple_repeat Simple_repeat 1 38 0 3 1265 920 171 7 0 chr3 89146369 89146515 -70453268 - B1_Mus1 SINE Alu -1 147 1 3 1265 1176 68 7 0 chr3 89146663 89146810 -70452973 - B1_Mus1 SINE Alu 0 148 1 3 1265 238 220 102 0 chr3 89146929 89146988 -70452795 - MIRc SINE MIR -184 84 20 3 1265 491 219 25 34 chr3 89150130 89150248 -70449535 - PB1D10 SINE Alu 0 117 1 3 1265 643 107 114 121 chr3 89150276 89150425 -70449358 + B1_Mur2 SINE Alu 1 148 -1 3 1265 211 283 38 0 chr3 89150453 89150506 -70449277 + PB1D9 SINE Alu 5 59 -61 3 1265 201 262 35 35 chr3 89150519 89150606 -70449177 - MIR SINE MIR 0 262 176 3 1265 457 324 19 27 chr3 89151562 89151755 -70448028 + MIR SINE MIR 39 249 -19 3 1265 309 89 0 0 chr3 89153529 89153574 -70446209 + (TCC)n Simple_repeat Simple_repeat 3 47 0 3 1265 226 160 0 74 chr3 89153913 89153967 -70445816 + (CCCCG)n Simple_repeat Simple_repeat 5 54 0 3 1265 1128 188 30 0 chr3 89154754 89154956 -70444827 + B3 SINE B2 2 209 -7 3 1265 1221 49 7 0 chr3 89154993 89155137 -70444646 + B1_Mus1 SINE Alu 3 147 -1 3 1265 397 235 118 0 chr3 89155559 89155661 -70444122 - RSINE1 SINE B4 -12 153 40 3 1265 291 28 0 0 chr3 89155661 89155697 -70444086 + (TG)n Simple_repeat Simple_repeat 2 37 0 3 1265 189 257 108 90 chr3 89155752 89155863 -70443920 - MIRc SINE MIR -115 153 41 3 1265 225 299 55 122 chr3 89156205 89156460 -70443323 + LTRIS3 LTR ERV1 79 316 -196 3 1265 320 176 0 16 chr3 89157824 89157892 -70441891 + B3A SINE B2 24 90 -126 3 1265 389 250 0 0 chr3 89158464 89158559 -70441224 - PB1D9 SINE Alu -50 99 5 3 1265 279 260 0 72 chr3 89158487 89158570 -70441213 - ID_B1 SINE B4 -70 154 78 3 1265 245 285 113 78 chr3 89158570 89158622 -70441161 - MT2B LTR ERVL -364 224 92 3 1265 369 300 184 32 chr3 89158727 89158944 -70440839 + MamRep564 Unknown Unknown 72 321 -36 3 1265 213 167 48 0 chr3 89159137 89159179 -70440604 + C-rich Low_complexity Low_complexity 4 47 0 3 1265 214 262 0 16 chr3 89160675 89160737 -70439046 + CT-rich Low_complexity Low_complexity 3 63 0 3 1265 343 319 48 14 chr3 89161080 89161226 -70438557 - MIR SINE MIR -1 261 111 3 1265 324 0 0 0 chr3 89162854 89162890 -70436893 + (CA)n Simple_repeat Simple_repeat 2 37 0 3 1265 220 338 50 2 chr3 89163283 89163407 -70436376 - L2c LINE L2 0 3426 3287 3 1265 357 372 47 31 chr3 89163629 89163884 -70435899 - L2c LINE L2 -85 3302 3044 3 1265 963 160 99 16 chr3 89164111 89164302 -70435481 - B3 SINE B2 -5 211 5 3 1265 270 336 100 0 chr3 89164311 89164421 -70435362 + L2 LINE L2 2723 2843 -576 3 1265 333 243 174 56 chr3 89164654 89164798 -70434985 + MLT1L LTR MaLR 1 161 -449 3 1265 320 344 8 39 chr3 89165042 89165169 -70434614 + PB1 SINE Alu 3 125 -2 3 1265 459 202 48 0 chr3 89165170 89165254 -70434529 + ID SINE ID 2 89 -135 3 1265 366 241 259 0 chr3 89165338 89165446 -70434337 + ID_B1 SINE B4 89 224 0 3 1265 506 271 20 34 chr3 89165487 89165636 -70434147 + B1_Mur3 SINE Alu 2 148 -1 3 1265 261 250 48 36 chr3 89166206 89166289 -70433494 + PB1D10 SINE Alu 21 104 -13 3 1265 235 378 0 0 chr3 89166357 89166439 -70433344 + Lx8 LINE L1 7242 7323 -150 3 1265 883 136 7 0 chr3 89166520 89166660 -70433123 + B1_Mur4 SINE Alu 10 150 0 3 1265 438 302 23 8 chr3 89167269 89167399 -70432384 - B1F SINE Alu -13 136 5 3 1265 278 0 54 0 chr3 89167411 89167448 -70432335 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 3 1265 1059 66 7 7 chr3 89167448 89167586 -70432197 - B1_Mus2 SINE Alu -9 138 1 3 1265 1388 146 15 70 chr3 89167601 89167873 -70431910 - L1Md_F3 LINE L1 -1 6583 6327 3 1265 736 220 80 32 chr3 89168315 89168503 -70431280 - B3A SINE B2 0 198 2 3 1265 858 195 35 6 chr3 89168540 89168710 -70431073 - B2_Mm2 SINE B2 -20 175 1 3 1265 324 0 0 0 chr3 89170363 89170399 -70429384 + (TG)n Simple_repeat Simple_repeat 1 36 0 3 1265 264 30 0 0 chr3 89170399 89170432 -70429351 + (TGG)n Simple_repeat Simple_repeat 3 35 0 3 1265 217 276 22 22 chr3 89171240 89171329 -70428454 - MIR3 SINE MIR -16 192 104 3 1265 291 366 20 10 chr3 89172936 89173038 -70426745 + MIR SINE MIR 3 105 -157 3 1265 303 277 60 0 chr3 89173110 89173193 -70426590 + MIRb SINE MIR 100 187 -81 3 1265 612 253 0 0 chr3 89173286 89173557 -70426226 + (CA)n Simple_repeat Simple_repeat 1 271 0 3 1265 198 103 0 0 chr3 89173566 89173595 -70426188 + (CAAA)n Simple_repeat Simple_repeat 3 31 0 3 1265 262 229 101 91 chr3 89173817 89173965 -70425818 + PB1D10 SINE Alu 12 142 -7 3 1265 942 94 65 0 chr3 89174036 89174174 -70425609 + B1_Mus1 SINE Alu 2 148 0 3 1265 849 175 220 0 chr3 89175041 89175218 -70424565 - B3 SINE B2 0 216 1 3 1265 513 228 61 2 chr3 89175270 89175421 -70424362 - B3A SINE B2 -5 211 54 3 1265 1430 81 43 0 chr3 89175752 89175938 -70423845 - B2_Mm2 SINE B2 0 195 2 3 1265 710 233 137 5 chr3 89175966 89176156 -70423627 - B3 SINE B2 0 216 2 3 1265 1058 238 14 5 chr3 89176181 89176388 -70423395 - B3 SINE B2 -6 210 2 3 1265 180 111 0 0 chr3 89177556 89177583 -70422200 + (CAGAGA)n Simple_repeat Simple_repeat 1 27 0 3 1265 457 196 25 18 chr3 89177715 89177860 -70421923 + PB1D9 SINE Alu 1 149 0 3 1265 566 255 14 14 chr3 89178159 89178306 -70421477 - B1_Mur2 SINE Alu -1 148 2 3 1265 271 214 16 149 chr3 89178203 89178324 -70421459 - MT2B LTR ERVL -344 257 153 3 1265 613 172 30 38 chr3 89178487 89178620 -70421163 - B1_Mur1 SINE Alu 0 149 18 3 1265 252 0 0 0 chr3 89178642 89178670 -70421113 + (TC)n Simple_repeat Simple_repeat 1 28 0 3 1265 216 0 0 0 chr3 89178670 89178693 -70421090 + (CA)n Simple_repeat Simple_repeat 1 24 0 3 1265 342 245 0 5 chr3 89178855 89178932 -70420851 + B1_Mur1 SINE Alu 40 142 -7 3 1265 425 265 58 111 chr3 89179014 89179052 -70420731 + B3A SINE B2 1 39 -159 3 1265 872 111 20 46 chr3 89179052 89179203 -70420580 + B1_Mus1 SINE Alu 1 147 -1 3 1265 560 265 57 107 chr3 89179203 89179378 -70420405 + B3 SINE B2 40 208 -8 3 1265 519 176 19 19 chr3 89179920 89180024 -70419759 - B1_Mur1 SINE Alu -6 143 40 3 1265 233 301 123 9 chr3 89180033 89180045 -70419738 - PB1 SINE Alu 0 127 116 3 1265 1192 55 7 0 chr3 89180045 89180190 -70419593 - B1_Mus1 SINE Alu -1 147 2 4 1265 333 301 123 9 chr3 89180190 89180291 -70419492 - PB1D10 SINE Alu -12 115 1 3 1265 312 191 85 106 chr3 89181019 89181160 -70418623 + MT2B2 LTR ERVL 103 240 -344 4 1265 434 237 119 28 chr3 89181065 89181084 -70418699 + ID_B1 SINE B4 68 223 -1 4 1265 769 73 137 0 chr3 89181084 89181208 -70418575 + B1_Mur4 SINE Alu 9 149 -1 4 1265 212 171 0 24 chr3 89183118 89183160 -70416623 + (TG)n Simple_repeat Simple_repeat 2 42 0 4 1265 243 215 0 0 chr3 89183161 89183226 -70416557 + (CA)n Simple_repeat Simple_repeat 2 66 0 4 1265 1059 80 18 53 chr3 89185460 89185631 -70414152 + B2_Mm2 SINE B2 23 187 -8 4 1265 237 159 0 0 chr3 89186290 89186334 -70413449 + CT-rich Low_complexity Low_complexity 1 44 0 4 1265 962 157 0 7 chr3 89186560 89186708 -70413075 + B1_Mur2 SINE Alu 3 149 0 4 1265 567 254 154 10 chr3 89186873 89187068 -70412715 + MIRb SINE MIR 34 256 -12 4 1265 248 312 52 31 chr3 89187175 89187271 -70412512 + MIR3 SINE MIR 70 167 -41 4 1265 258 358 0 0 chr3 89197190 89197310 -70402473 + C-rich Low_complexity Low_complexity 1 120 0 4 1265 221 216 0 0 chr3 89198722 89198759 -70401024 + C-rich Low_complexity Low_complexity 1 37 0 4 1265 1705 21 0 5 chr3 89201204 89201397 -70398386 + B2_Mm1a SINE B2 2 193 0 4 1265 756 86 0 0 chr3 89201558 89201663 -70398120 + (TTTC)n Simple_repeat Simple_repeat 2 106 0 4 1265 555 167 175 0 chr3 89201663 89201789 -70397994 - B1_Mus1 SINE Alu 0 148 1 4 1265 637 187 39 39 chr3 89202260 89202388 -70397395 - RSINE1 SINE B4 -35 130 3 4 1265 378 176 106 0 chr3 89202410 89202495 -70397288 + B1_Mur2 SINE Alu 36 129 -20 4 1265 180 0 0 0 chr3 89202496 89202516 -70397267 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 4 1265 1117 87 37 0 chr3 89202527 89202688 -70397095 + B2_Mm2 SINE B2 2 168 -27 4 1265 204 40 0 0 chr3 89202690 89202715 -70397068 + (TA)n Simple_repeat Simple_repeat 2 26 0 4 1265 180 0 0 0 chr3 89202715 89202735 -70397048 + (T)n Simple_repeat Simple_repeat 1 20 0 4 1265 1114 82 0 0 chr3 89202744 89202890 -70396893 - B1_Mm SINE Alu -1 146 1 4 1265 474 279 96 0 chr3 89202900 89203036 -70396747 - B1F SINE Alu 0 149 1 4 1265 367 289 0 0 chr3 89203557 89203640 -70396143 + B1F SINE Alu 6 88 -61 4 1265 274 259 21 177 chr3 89203640 89203664 -70396119 + MT2B2 LTR ERVL 170 257 -327 4 1265 679 192 0 0 chr3 89203664 89203784 -70395999 + PB1D9 SINE Alu 1 120 0 4 1265 274 259 21 177 chr3 89203784 89203816 -70395967 + MT2B2 LTR ERVL 258 287 -297 4 1265 684 56 0 0 chr3 89203786 89203875 -70395908 + B1_Mus2 SINE Alu 1 89 -58 4 1265 406 271 37 0 chr3 89204102 89204209 -70395574 - PB1D7 SINE Alu -1 119 9 4 1265 689 132 7 0 chr3 89204260 89204404 -70395379 + (CA)n Simple_repeat Simple_repeat 1 145 0 4 1265 310 216 123 38 chr3 89204476 89204582 -70395201 - B1F2 SINE Alu -1 148 34 4 1265 356 216 28 9 chr3 89204644 89204739 -70395044 + B1F SINE Alu 24 149 0 4 1265 1195 55 7 0 chr3 89204749 89204894 -70394889 + B1_Mus2 SINE Alu 1 146 -1 4 1265 389 226 83 0 chr3 89204983 89205067 -70394716 - B1_Mus1 SINE Alu -48 100 10 4 1265 285 241 0 0 chr3 89205015 89205073 -70394710 - B4A SINE B4 -147 145 88 4 1265 213 94 0 0 chr3 89205167 89205199 -70394584 + (CCAA)n Simple_repeat Simple_repeat 1 32 0 4 1265 191 114 29 0 chr3 89205350 89205385 -70394398 + (TGGGGG)n Simple_repeat Simple_repeat 4 39 0 4 1265 950 115 91 65 chr3 89207718 89207904 -70391879 + B2_Mm2 SINE B2 2 192 -3 4 1265 1269 175 10 0 chr3 89207935 89208141 -70391642 + B3 SINE B2 1 208 -8 4 1265 321 308 29 0 chr3 89208190 89208294 -70391489 - PB1D7 SINE Alu -1 119 13 4 1265 376 356 53 11 chr3 89208299 89208489 -70391294 - ID_B1 SINE B4 -20 204 7 4 1265 284 280 67 0 chr3 89208492 89208567 -70391216 - ID SINE ID -143 81 2 4 1265 23 33 0 0 chr3 89208578 89208608 -70391175 + AT_rich Low_complexity Low_complexity 1 30 0 4 1265 876 26 9 0 chr3 89208616 89208729 -70391054 + B1_Mus1 SINE Alu 35 148 0 4 1265 337 158 132 0 chr3 89208793 89208869 -70390914 - PB1D7 SINE Alu 0 120 35 4 1265 309 263 40 0 chr3 89208893 89208969 -70390814 - ID_B1 SINE B4 -1 223 145 4 1265 518 261 29 36 chr3 89209012 89209151 -70390632 - RSINE1 SINE B4 -27 138 1 4 1265 266 231 0 0 chr3 89209205 89209257 -70390526 - ID SINE ID -172 52 1 4 1265 490 241 82 15 chr3 89210039 89210174 -70389609 - B1F SINE Alu -5 144 1 4 1265 376 220 45 99 chr3 89210252 89210363 -70389420 - PB1D9 SINE Alu -15 105 1 4 1265 21 0 0 0 chr3 89210366 89210387 -70389396 + AT_rich Low_complexity Low_complexity 1 21 0 4 1265 1244 48 0 0 chr3 89210415 89210560 -70389223 + B1_Mm SINE Alu 3 147 0 4 1265 216 0 0 0 chr3 89210560 89210584 -70389199 + (A)n Simple_repeat Simple_repeat 1 24 0 4 1265 1487 87 0 5 chr3 89210608 89210804 -70388979 + B2_Mm2 SINE B2 1 195 0 4 1265 616 264 0 54 chr3 89210816 89210984 -70388799 + B3 SINE B2 2 160 -56 4 1265 1201 41 0 20 chr3 89212120 89212269 -70387514 - B1_Mm SINE Alu 0 147 2 4 1265 585 290 48 5 chr3 89213967 89214154 -70385629 + B3A SINE B2 1 195 -3 4 1265 743 188 0 68 chr3 89214158 89214306 -70385477 + B1_Mur1 SINE Alu 1 138 -11 4 1265 204 239 0 0 chr3 89214313 89214359 -70385424 + MIRb SINE MIR 36 81 -187 4 1265 875 138 0 7 chr3 89214369 89214508 -70385275 - B1_Mur3 SINE Alu 0 149 12 4 1265 377 259 36 114 chr3 89214378 89214414 -70385369 - B4 SINE B4 -74 218 126 4 1265 386 198 0 119 chr3 89214414 89214523 -70385260 - MT2B LTR ERVL -343 258 163 4 1265 377 259 36 114 chr3 89214523 89214544 -70385239 - B4 SINE B4 -74 125 66 4 1265 183 315 73 51 chr3 89214545 89214682 -70385101 + MIR SINE MIR 97 236 -26 4 1265 216 269 73 15 chr3 89216155 89216223 -70383560 - B1_Mur2 SINE Alu -10 139 68 4 1265 655 132 174 0 chr3 89216306 89216427 -70383356 - B1_Mus1 SINE Alu -6 142 1 4 1265 995 46 0 0 chr3 89216471 89216601 -70383182 - B1_Mus1 SINE Alu 0 148 19 4 1265 384 267 80 44 chr3 89216956 89217093 -70382690 - RSINE1 SINE B4 -21 144 3 4 1265 227 216 39 0 chr3 89217106 89217157 -70382626 - MER5A1 DNA MER1_type -53 113 61 4 1265 359 179 250 10 chr3 89217492 89217588 -70382195 + PB1D9 SINE Alu 1 119 -1 4 1265 1222 49 0 0 chr3 89217596 89217740 -70382043 + B1_Mus1 SINE Alu 5 148 0 4 1265 198 0 0 0 chr3 89217740 89217762 -70382021 + (A)n Simple_repeat Simple_repeat 1 22 0 4 1265 573 267 85 25 chr3 89217939 89218139 -70381644 + B3 SINE B2 1 212 -4 4 1265 356 233 222 0 chr3 89218139 89218229 -70381554 + PB1D9 SINE Alu 3 112 -8 4 1265 1447 60 16 21 chr3 89218544 89218731 -70381052 - B2_Mm2 SINE B2 -9 186 1 4 1265 667 263 8 11 chr3 89218734 89218924 -70380859 - B3 SINE B2 -4 194 2 4 1265 269 269 25 13 chr3 89220409 89220488 -70379295 + PB1D10 SINE Alu 12 91 -26 4 1265 792 130 80 0 chr3 89220509 89220647 -70379136 + B1_Mur3 SINE Alu 1 149 0 4 1265 250 162 43 29 chr3 89220649 89220719 -70379064 + A-rich Low_complexity Low_complexity 4 74 0 4 1265 402 74 0 0 chr3 89221158 89221212 -70378571 + (A)n Simple_repeat Simple_repeat 1 54 0 4 1265 423 298 10 0 chr3 89221360 89221464 -70378319 - PB1D7 SINE Alu -10 110 6 4 1265 489 185 0 129 chr3 89224123 89224247 -70375536 + B1_Mur3 SINE Alu 41 148 -1 4 1265 222 86 0 0 chr3 89224281 89224295 -70375488 + (T)n Simple_repeat Simple_repeat 1 14 0 4 1265 1044 51 80 14 chr3 89224295 89224433 -70375350 - B1_Mm SINE Alu 0 147 1 4 1265 222 86 0 0 chr3 89224433 89224453 -70375330 + (T)n Simple_repeat Simple_repeat 1 20 0 4 1265 223 290 160 11 chr3 89227851 89227945 -70371838 + B4 SINE B4 80 187 -105 4 1265 425 153 118 0 chr3 89227866 89227951 -70371832 + PB1D9 SINE Alu 10 104 -16 4 1265 376 214 152 19 chr3 89228237 89228342 -70371441 + PB1D9 SINE Alu 2 120 0 4 1265 779 216 82 0 chr3 89229124 89229318 -70370465 - B3 SINE B2 0 216 7 4 1265 684 167 32 0 chr3 89229378 89229504 -70370279 + B1_Mus2 SINE Alu 18 147 0 4 1265 360 111 0 0 chr3 89229592 89229646 -70370137 + (TG)n Simple_repeat Simple_repeat 1 54 0 4 1265 664 254 127 41 chr3 89229651 89229918 -70369865 - B4A SINE B4 -2 290 1 4 1265 947 59 22 0 chr3 89230128 89230263 -70369520 - B1_Mus2 SINE Alu 0 147 10 4 1265 225 0 0 0 chr3 89231728 89231753 -70368030 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 4 1265 770 108 93 0 chr3 89231843 89231972 -70367811 - B1_Mur4 SINE Alu -9 141 1 4 1265 722 129 49 28 chr3 89233005 89233149 -70366634 + B1_Mm SINE Alu 1 147 0 4 1265 22 35 0 0 chr3 89234594 89234623 -70365160 + GC_rich Low_complexity Low_complexity 1 29 0 4 1265 601 274 12 19 chr3 89235285 89235445 -70364338 - ID_B1 SINE B4 -3 221 63 4 1265 490 186 26 11 chr3 89235467 89235585 -70364198 - B3A SINE B2 -98 118 3 4 1265 279 0 0 0 chr3 89235769 89235800 -70363983 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 4 1265 273 282 276 20 chr3 89235814 89235966 -70363817 + ID_B1 SINE B4 32 222 -2 4 1265 261 83 0 0 chr3 89236027 89236063 -70363720 + (TTG)n Simple_repeat Simple_repeat 1 36 0 4 1265 407 300 69 0 chr3 89239362 89239492 -70360291 + RSINE1 SINE B4 25 163 -2 4 1265 564 167 10 0 chr3 89239555 89239651 -70360132 + B3 SINE B2 12 108 -108 5 1265 228 130 0 0 chr3 89239811 89239857 -70359926 + (TTTTTG)n Simple_repeat Simple_repeat 6 51 0 5 1265 242 227 78 22 chr3 89239857 89239947 -70359836 - B1F1 SINE Alu 0 117 23 5 1265 24 0 0 0 chr3 89239958 89239982 -70359801 + AT_rich Low_complexity Low_complexity 1 24 0 5 1265 541 178 109 78 chr3 89240078 89240206 -70359577 - B1_Mur1 SINE Alu -16 133 2 5 1265 1513 53 21 0 chr3 89241720 89241909 -70357874 - B2_Mm1t SINE B2 0 193 1 5 1265 1230 153 119 0 chr3 89242428 89242630 -70357153 - URR1A DNA MER1_type 0 226 1 5 1265 838 153 6 6 chr3 89243082 89243246 -70356537 + CT-rich Low_complexity Low_complexity 3 166 0 5 1265 361 209 307 35 chr3 89243290 89243404 -70356379 - B1_Mur3 SINE Alu -2 147 3 5 1265 2622 127 10 5 chr3 89244351 89244762 -70355021 - MTC LTR MaLR -8 413 1 5 1265 538 212 82 15 chr3 89245046 89245180 -70354603 + ID_B1 SINE B4 82 224 0 5 1265 1227 61 0 0 chr3 89245527 89245674 -70354109 + B1_Mus1 SINE Alu 2 148 0 5 1265 441 0 0 0 chr3 89245757 89245806 -70353977 + (CA)n Simple_repeat Simple_repeat 2 50 0 5 1265 389 341 11 62 chr3 89245823 89246001 -70353782 + B4A SINE B4 4 172 -120 5 1265 711 227 0 0 chr3 89246074 89246202 -70353581 - B1_Mur1 SINE Alu -21 128 1 5 1265 356 213 8 122 chr3 89246093 89246216 -70353567 - MT2B LTR ERVL -338 263 155 5 1265 432 55 0 0 chr3 89246281 89246336 -70353447 + (CATA)n Simple_repeat Simple_repeat 4 58 0 5 1265 420 71 0 0 chr3 89246336 89246392 -70353391 + (GA)n Simple_repeat Simple_repeat 1 56 0 5 1265 542 181 19 0 chr3 89247725 89247830 -70351953 + B3 SINE B2 2 108 -108 5 1265 212 254 141 74 chr3 89247830 89247874 -70351909 + B4A SINE B4 2 160 -132 5 1265 1120 140 57 158 chr3 89247913 89247972 -70351811 - URR1B DNA MER1_type 0 225 195 5 1265 1163 61 0 39 chr3 89247972 89248126 -70351657 - B1_Mus1 SINE Alu 0 148 1 5 1265 1120 140 57 158 chr3 89248126 89248312 -70351471 - URR1B DNA MER1_type -31 194 5 5 1265 265 329 0 0 chr3 89250800 89250876 -70348907 - ID SINE ID -147 77 2 5 1265 267 103 0 0 chr3 89252868 89252907 -70346876 + (A)n Simple_repeat Simple_repeat 1 39 0 5 1265 815 138 14 21 chr3 89253878 89254019 -70345764 + B1_Mus1 SINE Alu 3 142 -6 5 1265 1061 184 4 86 chr3 89254167 89254399 -70345384 + B3 SINE B2 1 213 -3 5 1265 251 302 10 30 chr3 89255429 89255528 -70344255 + CT-rich Low_complexity Low_complexity 5 101 0 5 1265 419 270 0 9 chr3 89255593 89255705 -70344078 - PB1D10 SINE Alu -2 115 5 5 1265 519 285 54 27 chr3 89256612 89256796 -70342987 - MER2 DNA MER2_type -64 281 93 5 1265 597 124 0 132 chr3 89256859 89256980 -70342803 - PB1D9 SINE Alu -11 109 5 5 1265 386 264 47 16 chr3 89256985 89257112 -70342671 - B1F SINE Alu -7 142 12 5 1265 563 187 96 18 chr3 89257157 89257341 -70342442 - B3 SINE B2 0 195 3 5 1265 226 273 77 13 chr3 89257409 89257487 -70342296 - B1F SINE Alu -55 94 12 5 1265 646 153 15 9 chr3 89257577 89257706 -70342077 - B1_Mus2 SINE Alu -2 147 5 5 1265 420 277 93 20 chr3 89257789 89257940 -70341843 - RSINE1 SINE B4 0 165 4 5 1265 228 302 20 30 chr3 89257943 89258042 -70341741 - PB1D10 SINE Alu 0 117 20 5 1265 260 234 14 267 chr3 89258227 89258373 -70341410 + B3 SINE B2 1 109 -89 5 1265 210 71 0 0 chr3 89259006 89259034 -70340749 + (GGGTG)n Simple_repeat Simple_repeat 5 32 0 5 1265 228 67 0 0 chr3 89259129 89259159 -70340624 + (GGGTG)n Simple_repeat Simple_repeat 3 32 0 5 1265 848 111 64 43 chr3 89259433 89259445 -70340338 - B1_Mus1 SINE Alu -3 145 139 5 1265 315 0 0 0 chr3 89259445 89259480 -70340303 + (TTTTA)n Simple_repeat Simple_repeat 2 36 0 5 1265 848 111 64 43 chr3 89259480 89259608 -70340175 - B1_Mus1 SINE Alu -10 138 2 5 1265 1050 63 63 0 chr3 89259676 89259834 -70339949 - B2_Mm1a SINE B2 0 193 26 5 1265 396 0 0 0 chr3 89259872 89259916 -70339867 + (GA)n Simple_repeat Simple_repeat 1 44 0 5 158 217 237 78 13 chr3 89260028 89260105 -70339678 - ID4_ SINE ID 0 83 2 5 1266 195 265 150 96 chr3 89260261 89260428 -70339355 - MIR3 SINE MIR -14 194 19 5 1266 1069 66 73 0 chr3 89260443 89260579 -70339204 - B1_Mus2 SINE Alu 0 147 2 5 1266 576 0 0 0 chr3 89260630 89260694 -70339089 + (CA)n Simple_repeat Simple_repeat 2 65 0 5 1266 741 194 15 7 chr3 89261294 89261429 -70338354 - B3 SINE B2 -6 210 75 5 1266 451 205 0 0 chr3 89261426 89261504 -70338279 - B1_Mus1 SINE Alu -70 78 1 5 1266 315 0 0 0 chr3 89261896 89261931 -70337852 + (TTTTA)n Simple_repeat Simple_repeat 5 39 0 5 1266 254 268 155 0 chr3 89261932 89262029 -70337754 - ID_B1 SINE B4 -59 165 54 5 1266 664 197 154 22 chr3 89262116 89262298 -70337485 - B3 SINE B2 -4 212 7 5 1266 266 357 107 15 chr3 89263785 89263916 -70335867 - MIRb SINE MIR -15 253 111 5 1266 681 76 0 0 chr3 89263922 89264027 -70335756 + (TG)n Simple_repeat Simple_repeat 1 105 0 5 1266 21 36 0 0 chr3 89264088 89264116 -70335667 + AT_rich Low_complexity Low_complexity 1 28 0 5 1266 580 228 47 38 chr3 89264236 89264434 -70335349 - B3 SINE B2 -3 213 12 5 1266 273 260 9 123 chr3 89264405 89264519 -70335264 - B4 SINE B4 -168 124 24 5 1266 219 69 0 0 chr3 89265028 89265057 -70334726 + (T)n Simple_repeat Simple_repeat 1 29 0 5 1266 1248 54 0 0 chr3 89265057 89265204 -70334579 - B1_Mus1 SINE Alu 0 148 2 5 1266 213 315 67 11 chr3 89265591 89265681 -70334102 - MIRc SINE MIR -62 206 112 5 1266 880 273 71 42 chr3 89266148 89266431 -70333352 + B4 SINE B4 1 291 -1 5 1266 404 306 148 58 chr3 89266520 89266884 -70332899 - MLT1A1 LTR MaLR -3 405 9 5 1266 258 276 36 109 chr3 89266881 89267019 -70332764 + MT2B LTR ERVL 144 271 -330 5 1266 711 181 14 0 chr3 89266907 89267045 -70332738 + B1_Mur1 SINE Alu 10 149 0 5 1266 198 0 0 0 chr3 89267233 89267255 -70332528 + (T)n Simple_repeat Simple_repeat 1 22 0 5 1266 654 66 0 0 chr3 89267255 89267346 -70332437 - B1_Mm SINE Alu 0 147 57 5 1266 333 100 0 0 chr3 89267406 89267456 -70332327 + (CTA)n Simple_repeat Simple_repeat 1 50 0 5 1266 934 169 0 7 chr3 89267456 89267598 -70332185 - B1_Mur4 SINE Alu -8 142 1 5 1266 599 225 64 14 chr3 89268788 89268928 -70330855 - B1_Mur1 SINE Alu -1 148 2 5 1266 309 109 0 0 chr3 89269052 89269098 -70330685 + (TTTC)n Simple_repeat Simple_repeat 3 48 0 5 1266 1230 68 0 0 chr3 89269098 89269245 -70330538 - B1_Mm SINE Alu 0 147 1 5 1266 524 191 19 0 chr3 89269286 89269391 -70330392 - ID_B1 SINE B4 0 224 118 5 1266 246 313 36 64 chr3 89269432 89269572 -70330211 - L2a LINE L2 0 3426 3291 5 1266 265 333 61 0 chr3 89269688 89269835 -70329948 - L2a LINE L2 -271 3155 3000 5 1266 1279 27 0 0 chr3 89270046 89270193 -70329590 + B1_Mus2 SINE Alu 1 147 0 5 1266 195 39 0 0 chr3 89270193 89270213 -70329570 + (A)n Simple_repeat Simple_repeat 1 20 0 5 1266 1702 21 0 5 chr3 89270288 89270482 -70329301 + B2_Mm1a SINE B2 1 193 0 5 1266 732 217 18 36 chr3 89270500 89270667 -70329116 + RSINE1 SINE B4 2 165 0 5 1266 189 0 0 0 chr3 89270667 89270688 -70329095 + (CA)n Simple_repeat Simple_repeat 1 21 0 5 1266 425 285 88 16 chr3 89270726 89270851 -70328932 + B1F1 SINE Alu 15 148 -1 5 1266 794 161 0 34 chr3 89272990 89273138 -70326645 + B1_Mus2 SINE Alu 5 147 0 5 1266 228 67 0 0 chr3 89273139 89273169 -70326614 + (GAAA)n Simple_repeat Simple_repeat 2 31 0 5 1266 1098 106 115 10 chr3 89274133 89274333 -70325450 + URR1A DNA MER1_type 1 221 -5 5 1266 1512 45 17 0 chr3 89274372 89274550 -70325233 - B2_Mm2 SINE B2 -14 181 1 5 1266 181 324 57 98 chr3 89274561 89274684 -70325099 - MIR SINE MIR -117 145 28 5 1266 920 206 108 0 chr3 89275395 89275589 -70324194 - B3 SINE B2 0 216 2 5 1266 36 0 0 0 chr3 89275692 89275728 -70324055 + AT_rich Low_complexity Low_complexity 1 36 0 5 1266 424 204 65 0 chr3 89275907 89276000 -70323783 + B1F1 SINE Alu 3 101 -48 5 1266 267 250 120 43 chr3 89275998 89276090 -70323693 - PB1D9 SINE Alu -21 99 1 5 1266 637 158 259 0 chr3 89276211 89276350 -70323433 + URR1A DNA MER1_type 38 212 -14 5 1266 559 246 21 14 chr3 89276430 89276574 -70323209 + RSINE1 SINE B4 2 146 -19 5 1266 811 221 75 5 chr3 89276877 89277077 -70322706 - B3 SINE B2 0 216 3 5 1266 188 91 52 52 chr3 89277086 89277144 -70322639 + CT-rich Low_complexity Low_complexity 3 60 0 5 1266 1355 184 97 0 chr3 89277153 89277431 -70322352 - RMER1C Other Other -2 1340 1036 5 1266 180 0 0 0 chr3 89277433 89277453 -70322330 + (TATG)n Simple_repeat Simple_repeat 1 20 0 5 1266 878 132 16 0 chr3 89277458 89277619 -70322164 - B2_Mm2 SINE B2 -42 174 3 5 1266 1245 61 0 0 chr3 89277641 89277789 -70321994 - B1_Mus1 SINE Alu 0 148 1 5 1266 1676 245 21 21 chr3 89277789 89278164 -70321619 - RMER1C Other Other -293 1049 675 5 1266 960 115 52 42 chr3 89278182 89278373 -70321410 - B2_Mm2 SINE B2 -2 193 1 5 1266 509 257 29 22 chr3 89278383 89278522 -70321261 - B1_Mur1 SINE Alu -8 141 2 5 1266 243 57 0 0 chr3 89278611 89278637 -70321146 + (GA)n Simple_repeat Simple_repeat 2 27 0 5 1266 863 87 0 8 chr3 89278637 89278764 -70321019 + (GAA)n Simple_repeat Simple_repeat 3 128 0 5 1266 243 57 0 0 chr3 89278764 89278772 -70321011 + (GA)n Simple_repeat Simple_repeat 2 9 0 6 1266 309 292 32 43 chr3 89278910 89279003 -70320780 + PB1D9 SINE Alu 1 92 -28 6 1266 491 221 107 0 chr3 89279047 89279187 -70320596 + RSINE1 SINE B4 5 159 -6 6 1266 499 283 21 28 chr3 89279910 89280052 -70319731 - ID_B1 SINE B4 0 224 84 6 1266 1192 105 0 0 chr3 89280082 89280253 -70319530 + B2_Mm2 SINE B2 2 172 -23 6 1266 374 276 16 36 chr3 89280270 89280381 -70319402 + PB1D7 SINE Alu 9 127 0 6 1266 449 164 35 52 chr3 89280631 89280747 -70319036 + B1_Mus1 SINE Alu 1 114 -3 6 1266 593 69 0 11 chr3 89280777 89280865 -70318918 + (GA)n Simple_repeat Simple_repeat 2 88 0 6 1266 183 80 0 0 chr3 89281010 89281035 -70318748 + (T)n Simple_repeat Simple_repeat 1 25 0 6 1266 1027 84 7 0 chr3 89281112 89281255 -70318528 - B1_Mus1 SINE Alu 0 148 5 6 1266 538 256 23 0 chr3 89281304 89281437 -70318346 - RSINE1 SINE B4 -28 137 2 6 1266 226 250 66 0 chr3 89281451 89281527 -70318256 - ID4_ SINE ID -2 81 1 6 1266 255 355 72 32 chr3 89281562 89281582 -70318201 - B4 SINE B4 -78 214 86 6 1266 308 281 58 10 chr3 89281582 89281686 -70318097 - B1F1 SINE Alu -40 109 1 6 1266 189 0 0 0 chr3 89282452 89282473 -70317310 + (GCCTG)n Simple_repeat Simple_repeat 4 24 0 6 1266 377 279 69 1 chr3 89282500 89282642 -70317141 - MIR3 SINE MIR -43 165 18 6 1266 387 0 0 0 chr3 89283737 89283780 -70316003 + (TCG)n Simple_repeat Simple_repeat 1 43 0 6 1266 1007 39 0 8 chr3 89283780 89283909 -70315874 + (TTC)n Simple_repeat Simple_repeat 1 128 0 6 1266 1099 115 0 0 chr3 89283913 89284078 -70315705 - B2_Mm2 SINE B2 -28 167 3 6 1266 258 32 0 0 chr3 89284129 89284160 -70315623 + (TG)n Simple_repeat Simple_repeat 1 31 0 6 1266 330 115 0 0 chr3 89284255 89284307 -70315476 + (TG)n Simple_repeat Simple_repeat 1 52 0 6 1266 489 182 164 0 chr3 89284308 89284418 -70315365 - RSINE1 SINE B4 -36 129 2 6 1266 979 195 48 5 chr3 89284480 89284686 -70315097 - B3 SINE B2 0 216 2 6 1266 482 248 44 0 chr3 89284700 89284813 -70314970 - PB1D7 SINE Alu 0 120 3 6 1266 207 0 0 0 chr3 89284815 89284838 -70314945 + (TG)n Simple_repeat Simple_repeat 2 24 0 6 1266 766 160 38 87 chr3 89285790 89285975 -70313808 - B2_Mm2 SINE B2 -17 178 3 6 1266 333 0 0 0 chr3 89285990 89286027 -70313756 + (TG)n Simple_repeat Simple_repeat 1 37 0 6 1266 272 229 82 0 chr3 89286033 89286094 -70313689 - RSINE1 SINE B4 -60 105 40 6 1266 323 268 49 0 chr3 89286121 89286203 -70313580 - B1F SINE Alu -15 134 49 6 1266 202 222 79 53 chr3 89286299 89286375 -70313408 + L2 LINE L2 3004 3081 -338 6 1266 1337 58 5 82 chr3 89286909 89287117 -70312666 + B2_Mm1a SINE B2 2 193 0 6 1266 444 217 107 54 chr3 89287121 89287233 -70312550 - B1F SINE Alu -23 126 9 6 1266 1144 68 0 0 chr3 89287285 89287431 -70312352 - B1_Mus2 SINE Alu 0 147 2 6 1266 648 316 1 12 chr3 89287463 89287672 -70312111 + B3A SINE B2 1 206 -10 6 1266 1303 86 16 5 chr3 89287712 89287900 -70311883 + B2_Mm2 SINE B2 1 190 -5 6 1266 1169 41 7 0 chr3 89287907 89288052 -70311731 + B1_Mm SINE Alu 2 147 0 6 1266 261 0 0 0 chr3 89288056 89288085 -70311698 + (CAA)n Simple_repeat Simple_repeat 2 30 0 6 1266 21 0 0 0 chr3 89288089 89288110 -70311673 + AT_rich Low_complexity Low_complexity 1 21 0 6 1266 274 140 40 0 chr3 89288228 89288278 -70311505 + RSINE1 SINE B4 89 140 -25 6 1266 645 230 44 33 chr3 89288422 89288602 -70311181 + B3A SINE B2 1 182 -16 6 1266 268 241 149 0 chr3 89289510 89289597 -70310186 - Zaphod DNA Tip100 -66 3965 3866 6 1266 788 98 104 22 chr3 89289599 89289734 -70310049 + B1_Mus1 SINE Alu 2 147 -1 6 1266 798 170 0 0 chr3 89289734 89289881 -70309902 + GA-rich Low_complexity Low_complexity 1 147 0 6 1266 416 249 126 11 chr3 89289949 89290132 -70309651 - Zaphod DNA Tip100 -232 3799 3596 6 1266 214 222 18 18 chr3 89290304 89290359 -70309424 + PB1D9 SINE Alu 6 60 -60 6 1266 303 93 0 0 chr3 89290453 89290496 -70309287 + (T)n Simple_repeat Simple_repeat 1 43 0 6 1266 786 43 248 0 chr3 89290496 89290613 -70309170 - B1_Mus2 SINE Alu 0 147 2 6 1266 38 0 0 0 chr3 89290613 89290651 -70309132 + AT_rich Low_complexity Low_complexity 1 38 0 6 1266 337 365 53 55 chr3 89290716 89291096 -70308687 - Zaphod DNA Tip100 -3182 849 471 6 1266 247 299 11 0 chr3 89291787 89291874 -70307909 - L1M5 LINE L1 -308 5816 5729 6 1266 429 270 80 0 chr3 89291976 89292113 -70307670 - B1F SINE Alu 0 149 2 6 1266 231 228 137 81 chr3 89292236 89292360 -70307423 + MT2B LTR ERVL 127 257 -344 6 1266 277 227 205 18 chr3 89292270 89292283 -70307500 + ID_B1 SINE B4 83 215 -9 6 1266 443 141 232 0 chr3 89292283 89292382 -70307401 + B1_Mur2 SINE Alu 19 140 -9 6 1266 313 376 27 11 chr3 89292953 89293100 -70306683 - L2a LINE L2 0 3426 3277 6 1266 522 0 0 0 chr3 89293100 89293158 -70306625 + (GGA)n Simple_repeat Simple_repeat 1 58 0 6 1266 313 376 27 11 chr3 89293158 89293193 -70306590 - L2a LINE L2 -150 3276 3241 6 1266 247 325 27 77 chr3 89293622 89293842 -70305941 - L2a LINE L2 -900 2519 2311 6 1266 354 294 37 50 chr3 89293842 89293862 -70305921 + ID_B1 SINE B4 64 222 -2 6 1266 682 199 21 0 chr3 89293862 89294003 -70305780 + B1_Mur4 SINE Alu 6 149 -1 6 1266 1275 242 82 6 chr3 89294638 89294979 -70304804 - ORR1D2 LTR MaLR -3 367 1 6 1266 300 221 68 23 chr3 89294982 89295070 -70304713 - PB1D7 SINE Alu 0 120 29 6 1266 540 97 0 0 chr3 89295844 89295937 -70303846 + (TG)n Simple_repeat Simple_repeat 2 94 0 6 1266 1072 131 88 46 chr3 89295940 89296156 -70303627 - URR1B DNA MER1_type 0 225 1 6 1266 365 197 0 62 chr3 89297186 89297267 -70302516 - RSINE1 SINE B4 -82 83 8 6 1266 520 309 92 44 chr3 89297299 89297570 -70302213 - MLT1K LTR MaLR -17 578 295 6 1266 189 107 0 0 chr3 89297786 89297814 -70301969 + (TTAA)n Simple_repeat Simple_repeat 2 29 0 6 1266 530 248 58 0 chr3 89297816 89297953 -70301830 - B1F1 SINE Alu -4 145 1 6 1266 691 266 11 0 chr3 89298015 89298192 -70301591 - B3A SINE B2 -19 179 1 6 1266 528 313 101 42 chr3 89298334 89298641 -70301142 - L1MD LINE L1 -1021 5125 4801 6 1266 407 215 113 4 chr3 89298705 89298838 -70300945 - B3 SINE B2 -43 173 6 6 1266 556 198 0 33 chr3 89298847 89298967 -70300816 - PB1D10 SINE Alu -1 116 1 6 1266 1840 110 110 0 chr3 89298974 89299292 -70300491 + ORR1B1 LTR MaLR 1 353 -41 6 1266 1054 96 19 0 chr3 89299297 89299454 -70300329 + B2_Mm2 SINE B2 27 186 -9 6 1266 289 169 45 30 chr3 89299429 89299496 -70300287 + ORR1B2 LTR MaLR 292 359 -8 6 1266 433 269 0 9 chr3 89299510 89299619 -70300164 - L1M5 LINE L1 -1468 4678 4571 6 1266 502 249 89 11 chr3 89299652 89299830 -70299953 - ORR1E LTR MaLR -20 339 148 6 1266 1754 188 52 85 chr3 89299830 89300030 -70299753 + MTD LTR MaLR 1 208 -211 6 1266 937 138 200 6 chr3 89300030 89300199 -70299584 + B3 SINE B2 3 206 -10 6 1266 258 105 0 0 chr3 89300199 89300237 -70299546 + (CATA)n Simple_repeat Simple_repeat 2 39 0 6 1266 1754 188 52 85 chr3 89300242 89300466 -70299317 + MTD LTR MaLR 209 411 -8 6 1266 409 192 0 0 chr3 89300469 89300547 -70299236 - ORR1E LTR MaLR -262 97 20 6 1266 656 217 21 7 chr3 89300621 89300765 -70299018 - B1_Mur1 SINE Alu -2 147 2 6 1266 439 331 23 29 chr3 89300771 89300902 -70298881 - L1MD LINE L1 -1822 4324 4196 6 1266 531 0 0 0 chr3 89300902 89300961 -70298822 + (TTCC)n Simple_repeat Simple_repeat 2 60 0 6 1266 439 331 23 29 chr3 89300961 89301003 -70298780 - L1MD LINE L1 -1951 4195 4152 6 1266 423 162 0 0 chr3 89301003 89301083 -70298700 + CT-rich Low_complexity Low_complexity 2 81 0 6 1266 1400 108 7 156 chr3 89301255 89301497 -70298286 - RLTR21 LTR ERVK 0 1572 1358 6 1266 1135 48 7 0 chr3 89301497 89301643 -70298140 - B1_Mus1 SINE Alu 0 148 2 6 1266 1400 108 7 156 chr3 89301643 89301703 -70298080 - RLTR21 LTR ERVK -215 1357 1315 6 1266 1413 68 5 0 chr3 89301703 89301894 -70297889 + B2_Mm1a SINE B2 1 192 -1 6 1266 420 55 0 0 chr3 89301923 89301978 -70297805 + (CA)n Simple_repeat Simple_repeat 2 56 0 6 1266 5602 129 43 111 chr3 89301979 89302270 -70297513 - RLTR21 LTR ERVK -498 1074 815 6 1266 1263 101 86 14 chr3 89302270 89302477 -70297306 + Lx LINE L1 6416 6639 -15 6 1266 1136 68 0 0 chr3 89302477 89302623 -70297160 + B1_Mus2 SINE Alu 2 147 0 6 1266 1263 101 86 14 chr3 89302623 89302637 -70297146 + Lx LINE L1 6640 6653 -1 6 1266 5602 129 43 111 chr3 89302637 89302754 -70297029 - RLTR21 LTR ERVK -758 814 758 6 1266 1133 62 7 0 chr3 89302754 89302899 -70296884 - B1_Mus1 SINE Alu 0 148 3 6 1266 5602 129 43 111 chr3 89302899 89302910 -70296873 - RLTR21 LTR ERVK -815 757 757 6 1266 1382 66 16 0 chr3 89302910 89303093 -70296690 - B2_Mm2 SINE B2 -9 186 1 6 1266 5602 129 43 111 chr3 89303093 89303820 -70295963 - RLTR21 LTR ERVK -815 757 3 6 1266 261 228 24 37 chr3 89303908 89303990 -70295793 + ORR1A3 LTR MaLR 17 97 -229 6 1266 1194 146 24 24 chr3 89304006 89304217 -70295566 - B3 SINE B2 -1 215 5 6 1266 270 154 0 0 chr3 89304321 89304353 -70295430 + T-rich Low_complexity Low_complexity 21 52 0 6 1266 1202 34 0 0 chr3 89304353 89304500 -70295283 - B1_Mm SINE Alu 0 147 1 6 1266 270 154 0 0 chr3 89304500 89304519 -70295264 + T-rich Low_complexity Low_complexity 2 20 0 6 1266 456 292 158 67 chr3 89304636 89305144 -70294639 + RMER13A LTR ERVK 95 700 -208 6 1266 822 68 51 0 chr3 89305259 89305377 -70294406 - B1_Mus2 SINE Alu -14 133 10 6 1266 277 232 130 10 chr3 89305289 89305389 -70294394 - B4A SINE B4 -98 194 83 6 1266 300 269 212 22 chr3 89305391 89305528 -70294255 - L1MD LINE L1 -2136 4010 3848 6 1266 759 205 110 5 chr3 89305528 89305719 -70294064 - B3 SINE B2 -1 215 5 6 1266 921 112 41 20 chr3 89305729 89305875 -70293908 - B1_Mur4 SINE Alu 0 150 2 6 1266 242 200 0 57 chr3 89305875 89305918 -70293865 + ORR1D2 LTR MaLR 329 370 0 6 1266 357 255 27 18 chr3 89306208 89306320 -70293463 + PB1D10 SINE Alu 5 117 0 7 1266 268 231 47 93 chr3 89307519 89307605 -70292178 - PB1D7 SINE Alu 0 120 39 7 1266 222 171 0 0 chr3 89308773 89308814 -70290969 + (TG)n Simple_repeat Simple_repeat 1 41 0 7 1266 234 323 97 0 chr3 89309358 89309451 -70290332 - B4 SINE B4 -26 266 165 7 1266 320 277 89 0 chr3 89309416 89309517 -70290266 - B1F SINE Alu -39 110 1 7 1266 334 295 53 30 chr3 89309581 89309606 -70290177 + ID_B1 SINE B4 79 214 -10 7 1266 441 206 56 9 chr3 89309606 89309714 -70290069 + B1F SINE Alu 27 139 -10 7 1266 218 333 0 0 chr3 89309996 89310065 -70289718 - L2a LINE L2 0 3426 3358 7 1266 187 379 0 0 chr3 89310142 89310208 -70289575 - L2a LINE L2 -247 3140 3075 7 1266 1146 180 23 0 chr3 89312483 89312700 -70287083 - URR1A DNA MER1_type 0 226 5 7 1266 305 258 0 0 chr3 89313061 89313127 -70286656 + ID4_ SINE ID 1 66 -17 7 1266 1131 50 56 0 chr3 89313168 89313329 -70286454 + B2_Mm2 SINE B2 1 170 -25 7 1266 285 29 0 0 chr3 89313336 89313370 -70286413 + (CCAA)n Simple_repeat Simple_repeat 2 35 0 7 1266 215 292 0 0 chr3 89314426 89314474 -70285309 + (CA)n Simple_repeat Simple_repeat 1 48 0 7 1266 331 274 0 23 chr3 89316052 89316138 -70283645 + B1F2 SINE Alu 49 132 -17 7 1266 183 129 0 0 chr3 89316274 89316305 -70283478 + (TG)n Simple_repeat Simple_repeat 2 32 0 7 1266 199 352 14 0 chr3 89316710 89316781 -70283002 - L2a LINE L2 -4 3422 3351 7 1266 1296 60 0 102 chr3 89317967 89318173 -70281610 - B2_Mm2 SINE B2 -9 186 2 7 1266 567 250 0 0 chr3 89318408 89318588 -70281195 + (TG)n Simple_repeat Simple_repeat 1 180 0 7 1266 765 51 0 0 chr3 89318756 89318854 -70280929 + (TG)n Simple_repeat Simple_repeat 2 99 0 7 1266 218 312 168 14 chr3 89318961 89319104 -70280679 + MIRc SINE MIR 81 245 -23 7 1266 198 0 0 0 chr3 89319900 89319922 -70279861 + (CAA)n Simple_repeat Simple_repeat 3 24 0 7 1266 983 175 34 10 chr3 89320352 89320560 -70279223 - B3 SINE B2 0 216 4 7 1266 877 249 14 9 chr3 89320601 89320816 -70278967 - B3 SINE B2 0 216 1 7 1266 211 200 61 91 chr3 89320946 89321045 -70278738 + MIRb SINE MIR 39 134 -134 7 1266 340 349 52 29 chr3 89321203 89321377 -70278406 - MER63A DNA AcHobo -9 201 24 7 1266 748 224 0 0 chr3 89321378 89321525 -70278258 + B1_Mur2 SINE Alu 2 148 -1 7 1266 468 276 9 0 chr3 89321743 89321848 -70277935 - B3 SINE B2 -39 177 72 7 1266 213 335 24 109 chr3 89323241 89323452 -70276331 + MIRb SINE MIR 3 195 -73 7 1266 384 88 0 0 chr3 89324573 89324630 -70275153 + (CAG)n Simple_repeat Simple_repeat 1 57 0 7 1266 414 0 0 0 chr3 89325376 89325422 -70274361 + (GA)n Simple_repeat Simple_repeat 1 46 0 7 1266 199 315 83 9 chr3 89327505 89327614 -70272169 + MIR3 SINE MIR 58 174 -34 7 1266 295 206 0 52 chr3 89328423 89328500 -70271283 + CT-rich Low_complexity Low_complexity 4 76 0 7 1266 189 0 0 0 chr3 89330276 89330297 -70269486 + (TACTG)n Simple_repeat Simple_repeat 3 23 0 7 1266 606 63 0 0 chr3 89330375 89330454 -70269329 + (GA)n Simple_repeat Simple_repeat 2 80 0 7 1266 200 348 43 21 chr3 89330801 89330895 -70268888 - MIR SINE MIR -97 111 16 7 1266 468 35 0 0 chr3 89330916 89330974 -70268809 + (TG)n Simple_repeat Simple_repeat 1 58 0 7 1266 345 325 106 0 chr3 89331181 89331332 -70268451 - B4A SINE B4 -124 168 2 7 1266 208 206 0 0 chr3 89332135 89332169 -70267614 + C-rich Low_complexity Low_complexity 1 34 0 7 1266 1002 93 0 0 chr3 89333714 89333854 -70265929 + B1_Mus2 SINE Alu 1 140 -7 7 1266 438 238 32 16 chr3 89334425 89334549 -70265234 + MIRb SINE MIR 41 166 -102 7 1266 219 327 19 19 chr3 89335126 89335229 -70264554 - MIR SINE MIR -87 121 19 7 1266 796 146 3 32 chr3 89335346 89335689 -70264094 + (TCTA)n Simple_repeat Simple_repeat 1 332 0 7 1266 510 88 0 0 chr3 89335692 89335760 -70264023 - B2_Mm2 SINE B2 -125 70 3 7 1266 729 93 9 18 chr3 89335787 89335897 -70263886 + B1_Mus1 SINE Alu 40 148 0 7 1266 188 32 97 0 chr3 89335897 89335928 -70263855 + (CAAAA)n Simple_repeat Simple_repeat 1 34 0 7 1266 901 151 191 22 chr3 89336029 89336212 -70263571 - B3 SINE B2 0 216 3 7 1266 212 374 0 0 chr3 89336270 89336353 -70263430 + ID4_ SINE ID 1 83 0 7 1266 486 258 54 46 chr3 89336683 89336813 -70262970 + RSINE1 SINE B4 2 132 -33 7 1266 291 28 0 0 chr3 89336825 89336861 -70262922 + (GA)n Simple_repeat Simple_repeat 1 36 0 7 1266 345 305 39 19 chr3 89336966 89337120 -70262663 - MIRb SINE MIR -77 191 35 7 1266 378 0 0 0 chr3 89337162 89337204 -70262579 + (TC)n Simple_repeat Simple_repeat 1 42 0 7 1266 539 41 27 0 chr3 89337202 89337275 -70262508 + (TTCC)n Simple_repeat Simple_repeat 1 75 0 7 1266 1154 43 0 0 chr3 89337275 89337416 -70262367 - B1_Mm SINE Alu -6 141 1 7 1266 1057 48 0 27 chr3 89337423 89337573 -70262210 + (TTTCC)n Simple_repeat Simple_repeat 4 149 0 7 1266 624 27 0 0 chr3 89337575 89337649 -70262134 + (TTCC)n Simple_repeat Simple_repeat 3 76 0 7 1266 832 173 0 0 chr3 89337665 89337804 -70261979 - B1_Mus1 SINE Alu 0 148 10 7 1266 556 327 74 16 chr3 89339319 89339630 -70260153 - L2a LINE L2 -1 3425 3097 7 1266 810 282 116 12 chr3 89339704 89340049 -70259734 - Charlie5 DNA MER1_type -1 2623 2243 7 1266 297 303 0 13 chr3 89340076 89340153 -70259630 - ID4_ SINE ID -1 82 7 7 1266 575 239 14 40 chr3 89340752 89340900 -70258883 + RSINE1 SINE B4 2 145 -20 7 1266 371 322 47 117 chr3 89340951 89341225 -70258558 + B4 SINE B4 1 255 -37 7 1266 504 0 0 0 chr3 89341520 89341576 -70258207 + (TG)n Simple_repeat Simple_repeat 2 57 0 7 1266 350 333 65 8 chr3 89342190 89342314 -70257469 + MER20 DNA MER1_type 5 135 -84 7 1266 653 201 35 14 chr3 89342471 89342612 -70257171 - B1_Mur2 SINE Alu -5 144 1 7 1266 870 156 210 0 chr3 89342862 89343029 -70256754 - B3 SINE B2 -14 202 1 7 1266 1419 63 11 0 chr3 89344686 89344877 -70254906 - B2_Mm1t SINE B2 0 193 1 7 1266 294 29 0 0 chr3 89346321 89346356 -70253427 + (TG)n Simple_repeat Simple_repeat 1 35 0 7 1266 617 214 28 17 chr3 89346736 89346912 -70252871 + MER117 DNA MER1_type 2 179 -18 7 1266 209 343 0 15 chr3 89346950 89347018 -70252765 + MIR SINE MIR 86 152 -110 7 1266 244 228 0 50 chr3 89348095 89348155 -70251628 - ID4 SINE ID -9 74 18 7 1266 625 11 123 0 chr3 89349426 89349880 -70249903 + (TA)n Simple_repeat Simple_repeat 1 509 0 7 1266 186 329 103 20 chr3 89350095 89350241 -70249542 + MIRc SINE MIR 10 167 -101 7 1266 708 190 44 0 chr3 89350265 89350402 -70249381 - B1_Mur1 SINE Alu -5 144 2 7 1266 380 234 0 21 chr3 89350509 89350605 -70249178 - MER5B DNA MER1_type -83 95 2 7 1266 272 70 0 23 chr3 89352907 89352951 -70246832 + (TG)n Simple_repeat Simple_repeat 2 44 0 7 1266 308 24 24 0 chr3 89353080 89353121 -70246662 + (TG)n Simple_repeat Simple_repeat 1 42 0 7 1266 180 305 11 89 chr3 89354037 89354127 -70245656 - L2c LINE L2 0 3387 3305 7 1266 607 245 14 7 chr3 89354452 89354596 -70245187 - B1_Mus2 SINE Alu -2 145 1 7 1266 228 316 40 30 chr3 89355907 89356008 -70243775 - MamSINE1 SINE tRNA -97 193 92 7 1266 360 204 153 0 chr3 89356149 89356247 -70243536 + B1_Mur1 SINE Alu 21 133 -16 7 1266 235 182 0 52 chr3 89356422 89356447 -70243336 + A-rich Low_complexity Low_complexity 1 24 0 7 1266 1154 41 7 13 chr3 89356447 89356596 -70243187 + B1_Mus1 SINE Alu 1 148 0 7 1266 235 182 0 52 chr3 89356596 89356628 -70243155 + A-rich Low_complexity Low_complexity 25 55 0 7 1266 1048 122 0 0 chr3 89356637 89356784 -70242999 + B1_Mur4 SINE Alu 3 149 -1 7 1266 243 88 0 0 chr3 89356789 89356823 -70242960 + (CCAA)n Simple_repeat Simple_repeat 2 35 0 7 1266 280 237 37 64 chr3 89358118 89358223 -70241560 + MIR3 SINE MIR 70 165 -43 7 1266 240 273 0 43 chr3 89358712 89358781 -70241002 + L3 LINE CR1 4326 4391 -98 7 1266 446 49 0 16 chr3 89358830 89358892 -70240891 + (TTTA)n Simple_repeat Simple_repeat 1 61 0 7 1266 4160 70 23 2 chr3 89358892 89359468 -70240315 - L1_Mus4 LINE L1 -33 6603 6016 7 1266 185 302 47 70 chr3 89360576 89360704 -70239079 + MIRb SINE MIR 27 151 -117 7 1266 192 280 85 57 chr3 89362065 89362171 -70237612 - MIRc SINE MIR -134 134 26 7 1266 223 330 43 86 chr3 89363762 89363878 -70235905 + MIRb SINE MIR 66 176 -92 7 1266 252 0 0 0 chr3 89363888 89363916 -70235867 + (CAG)n Simple_repeat Simple_repeat 2 29 0 7 1266 211 312 145 31 chr3 89364146 89364305 -70235478 + MIRb SINE MIR 87 263 -5 7 1266 215 296 0 0 chr3 89364380 89364434 -70235349 - B3A SINE B2 -140 58 5 7 1266 736 267 20 20 chr3 89365153 89365348 -70234435 + B3A SINE B2 4 198 0 7 1266 237 169 68 0 chr3 89366384 89366443 -70233340 - tRNA-Ala-GCY_ tRNA tRNA -8 67 5 7 1266 451 307 0 39 chr3 89366776 89366932 -70232851 + RSINE1 SINE B4 2 151 -14 7 1266 216 0 0 0 chr3 89367124 89367148 -70232635 + (GA)n Simple_repeat Simple_repeat 2 25 0 7 1266 388 282 70 28 chr3 89367364 89367620 -70232163 - L1MA6 LINE L1 -2 6298 6036 7 1266 372 77 0 0 chr3 89369096 89369148 -70230635 + (CA)n Simple_repeat Simple_repeat 1 52 0 8 1266 371 326 84 37 chr3 89369633 89369824 -70229959 + MIRb SINE MIR 23 222 -46 8 1266 27 62 0 0 chr3 89370721 89370769 -70229014 + AT_rich Low_complexity Low_complexity 1 48 0 8 1266 201 74 0 0 chr3 89372398 89372425 -70227358 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 8 1266 882 88 0 28 chr3 89372435 89372576 -70227207 - B2_Mm1t SINE B2 -3 190 54 8 1266 244 286 24 0 chr3 89372699 89372783 -70227000 + MIR SINE MIR 104 189 -73 8 1266 1371 123 108 167 chr3 89372854 89373032 -70226751 - ORR1C2 LTR MaLR 0 384 169 8 1266 372 43 0 0 chr3 89373032 89373078 -70226705 + (GA)n Simple_repeat Simple_repeat 1 46 0 8 1266 1371 123 108 167 chr3 89373078 89373307 -70226476 - ORR1C2 LTR MaLR -216 168 1 8 1266 201 384 79 32 chr3 89373601 89373854 -70225929 - L2 LINE L2 -665 2754 2490 8 1266 616 286 25 109 chr3 89375482 89375757 -70224026 + B4A SINE B4 1 252 -40 8 1266 1548 240 89 0 chr3 89375763 89376122 -70223661 - MTD LTR MaLR -16 403 13 8 1266 272 161 16 0 chr3 89376166 89376228 -70223555 + (CA)n Simple_repeat Simple_repeat 2 64 0 8 1266 357 209 88 0 chr3 89376599 89376690 -70223093 + PB1D10 SINE Alu 19 117 0 8 1266 206 224 0 0 chr3 89376693 89376742 -70223041 + GA-rich Low_complexity Low_complexity 1 49 0 8 1266 518 244 151 78 chr3 89377815 89378086 -70221697 - B4A SINE B4 0 292 2 8 1266 297 229 27 54 chr3 89379126 89379200 -70220583 - B1F1 SINE Alu -77 72 1 8 1266 1765 258 25 2 chr3 89379221 89379621 -70220162 - Lx8 LINE L1 -512 6961 6553 8 1266 637 286 61 29 chr3 89379624 89379869 -70219914 - RMER15-int LTR ERVL -561 4438 4186 8 1266 243 0 0 0 chr3 89379869 89379896 -70219887 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 8 1266 1064 74 0 33 chr3 89379907 89380060 -70219723 - B1_Mus1 SINE Alu 0 148 1 8 1266 1425 43 43 0 chr3 89380729 89380913 -70218870 - B2_Mm2 SINE B2 -2 193 2 8 1266 291 194 111 46 chr3 89380923 89381031 -70218752 - L1MB3 LINE L1 0 6183 6069 8 1266 347 298 15 0 chr3 89381291 89381400 -70218383 - MIRc SINE MIR -120 148 32 8 1266 251 294 43 21 chr3 89383747 89383841 -70215942 - RLTR42-int LTR ERVK -3728 1794 1699 8 1266 629 266 176 37 chr3 89386142 89386466 -70213317 - MLT1D LTR MaLR -45 460 92 8 1266 197 312 10 106 chr3 89386540 89386644 -70213139 - MIR SINE MIR -117 145 52 8 1266 531 278 46 0 chr3 89386811 89386962 -70212821 - MER5B DNA MER1_type 0 178 21 8 1266 324 237 66 0 chr3 89387305 89387381 -70212402 + MIR SINE MIR 107 187 -75 8 1266 236 325 77 31 chr3 89387464 89387594 -70212189 - L2c LINE L2 -9 3378 3243 8 1266 217 159 23 0 chr3 89389349 89389393 -70210390 + (TG)n Simple_repeat Simple_repeat 2 46 0 8 1266 367 349 19 9 chr3 89389720 89389827 -70209956 + MIRb SINE MIR 39 146 -122 8 1266 633 61 0 0 chr3 89390615 89390697 -70209086 + (TC)n Simple_repeat Simple_repeat 1 82 0 8 1267 272 325 25 0 chr3 89391627 89391707 -70208076 - L2a LINE L2 -52 3374 3293 8 1267 689 201 30 7 chr3 89391749 89391884 -70207899 + ID_B1 SINE B4 82 219 -5 8 1267 337 309 46 2 chr3 89392069 89392179 -70207604 - MIRb SINE MIR -132 136 16 8 1267 260 175 105 0 chr3 89393221 89393278 -70206505 - ID4_ SINE ID -17 66 4 8 1267 236 280 60 70 chr3 89393778 89393878 -70205905 + L2c LINE L2 3289 3387 0 8 1267 190 236 146 0 chr3 89393939 89393994 -70205789 + L4 LINE RTE 1113 1175 -854 8 1267 225 0 0 0 chr3 89394255 89394280 -70205503 + (TTG)n Simple_repeat Simple_repeat 1 25 0 8 1267 601 194 39 0 chr3 89394280 89394383 -70205400 - B1_Mur2 SINE Alu -13 136 30 8 1267 297 234 0 0 chr3 89397155 89397219 -70202564 - ID_B1 SINE B4 -3 221 158 8 1267 364 308 40 33 chr3 89397312 89397463 -70202320 + MLT1D LTR MaLR 95 246 -259 8 1267 295 272 213 8 chr3 89397637 89397830 -70201953 + MIR SINE MIR 22 247 -21 8 1267 273 312 69 28 chr3 89399657 89399802 -70199981 - L1MC LINE L1 -2004 5878 5728 8 1267 291 262 130 74 chr3 89400301 89400415 -70199368 + L1MA5 LINE L1 6052 6177 -123 8 1267 706 215 184 11 chr3 89400415 89400594 -70199189 + B3 SINE B2 1 210 -6 8 1267 291 262 130 74 chr3 89400594 89400710 -70199073 + L1MA5 LINE L1 6178 6295 -5 8 1267 554 335 25 19 chr3 89400887 89401045 -70198738 - RSINE1 SINE B4 0 165 7 8 1267 591 74 0 0 chr3 89401052 89401133 -70198650 + (TCTA)n Simple_repeat Simple_repeat 3 83 0 8 1267 625 275 14 0 chr3 89401178 89401320 -70198463 - ID_B1 SINE B4 0 224 81 8 1267 246 175 38 39 chr3 89401322 89401397 -70198386 - PB1D7 SINE Alu 0 149 70 8 1267 413 321 77 36 chr3 89401831 89402051 -70197732 + MIRb SINE MIR 17 245 -23 8 1267 656 270 68 24 chr3 89403004 89403209 -70196574 - B3 SINE B2 0 216 3 8 1267 229 224 34 17 chr3 89403471 89403530 -70196253 - MIR3 SINE MIR -54 154 95 8 1267 251 169 10 110 chr3 89403957 89404057 -70195726 + T-rich Low_complexity Low_complexity 2 91 0 8 1267 516 226 48 25 chr3 89404060 89404242 -70195541 - B3 SINE B2 0 195 2 8 1267 795 193 185 42 chr3 89404580 89404769 -70195014 - B3 SINE B2 0 216 1 8 1267 531 267 78 20 chr3 89406978 89407131 -70192652 + RSINE1 SINE B4 1 162 -3 8 1267 247 287 62 21 chr3 89407358 89407454 -70192329 - L2c LINE L2 -2 3385 3286 8 1267 967 205 259 26 chr3 89407523 89407863 -70191920 + MTD LTR MaLR 1 419 0 8 1267 244 213 153 19 chr3 89407871 89407958 -70191825 - MIR SINE MIR -101 161 67 8 1267 1187 28 0 28 chr3 89408099 89408244 -70191539 + B1_Mus1 SINE Alu 2 142 -6 8 1267 198 136 0 0 chr3 89408244 89408288 -70191495 + (CAGAGA)n Simple_repeat Simple_repeat 5 48 0 8 1267 650 140 0 9 chr3 89408287 89408402 -70191381 + (GAA)n Simple_repeat Simple_repeat 3 116 0 8 1267 399 247 12 0 chr3 89408405 89408490 -70191293 + PB1D10 SINE Alu 26 111 -6 8 1267 248 335 47 99 chr3 89408416 89408588 -70191195 + MT2B2 LTR ERVL 194 356 -228 8 1267 239 270 16 0 chr3 89408645 89408708 -70191075 - MER5B DNA MER1_type -114 64 1 8 1267 185 131 106 21 chr3 89409846 89409893 -70189890 - MIRc SINE MIR -134 134 84 8 1267 530 239 62 15 chr3 89411602 89411773 -70188010 - B3 SINE B2 -13 182 12 8 1267 851 341 111 9 chr3 89411813 89412263 -70187520 - MER21B LTR ERV1 -123 740 245 8 1267 579 299 66 28 chr3 89412362 89412446 -70187337 + ID_B1 SINE B4 4 224 0 8 1267 718 173 47 16 chr3 89412446 89412575 -70187208 + B1_Mur1 SINE Alu 15 147 -2 8 1267 552 183 21 0 chr3 89412606 89412748 -70187035 + (TG)n Simple_repeat Simple_repeat 2 146 0 8 1267 512 269 19 0 chr3 89412891 89412999 -70186784 + PB1D7 SINE Alu 8 117 -3 8 1267 213 39 0 0 chr3 89413906 89413932 -70185851 + (TTTA)n Simple_repeat Simple_repeat 1 26 0 8 1267 1130 108 19 0 chr3 89413932 89414090 -70185693 - B2_Mm2 SINE B2 -34 161 1 8 1267 341 328 8 47 chr3 89414140 89414268 -70185515 - MER103 DNA DNA -43 123 1 8 1267 581 270 53 0 chr3 89414303 89414455 -70185328 + MER5A1 DNA MER1_type 6 165 -1 8 1267 266 297 73 59 chr3 89415255 89415391 -70184392 - B4A SINE B4 -89 203 66 8 1267 181 365 102 20 chr3 89415396 89415494 -70184289 + MIRb SINE MIR 105 210 -58 8 1267 201 237 0 0 chr3 89416651 89416710 -70183073 + (TG)n Simple_repeat Simple_repeat 2 60 0 8 1267 250 333 70 76 chr3 89416774 89416889 -70182894 + LTR16A LTR ERVL 114 224 -227 8 1267 1072 139 124 5 chr3 89416889 89417091 -70182692 + URR1A DNA MER1_type 1 226 0 8 1267 250 333 70 76 chr3 89417091 89417160 -70182623 + LTR16A LTR ERVL 225 297 -154 8 1267 240 301 27 0 chr3 89418433 89418506 -70181277 + ID4 SINE ID 1 75 -8 8 1267 381 167 0 0 chr3 89418507 89418585 -70181198 + GA-rich Low_complexity Low_complexity 1 78 0 8 1267 194 105 26 0 chr3 89418612 89418650 -70181133 + (TTTG)n Simple_repeat Simple_repeat 1 39 0 8 1267 1033 141 7 0 chr3 89418656 89418805 -70180978 - B1_Mur4 SINE Alu 0 150 1 8 1267 351 0 0 0 chr3 89419250 89419289 -70180494 + (CA)n Simple_repeat Simple_repeat 2 40 0 8 1267 22 0 0 0 chr3 89419403 89419425 -70180358 + GC_rich Low_complexity Low_complexity 1 22 0 8 1267 293 250 39 26 chr3 89419788 89419866 -70179917 + RSINE1 SINE B4 58 136 -29 8 1267 294 95 0 0 chr3 89419884 89419926 -70179857 + (TGAA)n Simple_repeat Simple_repeat 4 45 0 8 1267 834 174 211 11 chr3 89420357 89420537 -70179246 + B3 SINE B2 1 216 0 8 1267 384 22 0 0 chr3 89420861 89420906 -70178877 + (TTTA)n Simple_repeat Simple_repeat 1 45 0 8 1267 801 212 124 11 chr3 89420906 89421092 -70178691 - B3 SINE B2 -9 207 1 8 1267 755 201 168 23 chr3 89421613 89421786 -70177997 + B3 SINE B2 2 199 -17 8 1267 417 39 0 0 chr3 89421787 89421838 -70177945 + (AAATG)n Simple_repeat Simple_repeat 3 53 0 8 1267 568 213 146 12 chr3 89421900 89422071 -70177712 + B4 SINE B4 1 194 -98 8 1267 333 0 0 0 chr3 89422095 89422132 -70177651 + (CA)n Simple_repeat Simple_repeat 1 37 0 8 1267 1214 188 14 0 chr3 89422268 89422476 -70177307 + B3 SINE B2 6 216 0 8 1267 459 299 87 7 chr3 89422504 89422642 -70177141 + B1F1 SINE Alu 1 149 0 8 1267 593 331 87 90 chr3 89422670 89423384 -70176399 + L1M5 LINE L1 4471 5182 -964 8 1267 1295 203 0 0 chr3 89423391 89423598 -70176185 + B3 SINE B2 2 208 -8 9 1267 27 81 0 0 chr3 89423598 89423660 -70176123 + AT_rich Low_complexity Low_complexity 1 62 0 9 1267 350 250 102 37 chr3 89423666 89423774 -70176009 + PB1D10 SINE Alu 1 115 -2 9 1267 964 173 67 62 chr3 89424263 89424473 -70175310 + B3 SINE B2 1 211 -5 9 1267 505 30 15 0 chr3 89424744 89424810 -70174973 - B1_Mus2 SINE Alu 0 147 81 9 1267 180 0 0 0 chr3 89425233 89425253 -70174530 + (TTG)n Simple_repeat Simple_repeat 2 21 0 9 1267 851 167 7 40 chr3 89425287 89425437 -70174346 - B1_Mur3 SINE Alu 0 149 5 9 1267 1542 43 16 0 chr3 89427178 89427365 -70172418 - B2_Mm2 SINE B2 -4 191 2 9 1267 359 299 88 18 chr3 89427517 89427687 -70172096 - MLT1J LTR MaLR -90 422 241 9 1267 427 174 37 6 chr3 89428261 89428349 -70171434 + PB1D9 SINE Alu 40 148 -1 9 1267 374 305 84 26 chr3 89428361 89428516 -70171267 + RSINE1 SINE B4 2 165 0 9 1267 278 384 11 11 chr3 89428528 89428739 -70171044 + (CATA)n Simple_repeat Simple_repeat 1 211 0 9 1267 315 0 0 0 chr3 89428743 89428778 -70171005 + (CA)n Simple_repeat Simple_repeat 1 35 0 9 1267 226 280 53 0 chr3 89428779 89428854 -70170929 + GA-rich Low_complexity Low_complexity 5 83 0 9 1267 229 154 0 37 chr3 89430528 89430582 -70169201 + C-rich Low_complexity Low_complexity 3 54 0 9 1267 1144 88 0 7 chr3 89431204 89431352 -70168431 + B1_Mus1 SINE Alu 2 148 0 9 1267 314 61 20 0 chr3 89431352 89431401 -70168382 + (TAAAA)n Simple_repeat Simple_repeat 1 50 0 9 1267 299 163 0 0 chr3 89431402 89431451 -70168332 + RSINE1 SINE B4 3 51 -114 9 1267 287 269 39 0 chr3 89432956 89433034 -70166749 - ID4 SINE ID -1 82 2 9 1267 573 245 35 28 chr3 89433050 89433193 -70166590 - B1F1 SINE Alu -1 148 5 9 1267 719 100 0 9 chr3 89434062 89434173 -70165610 + (TTCC)n Simple_repeat Simple_repeat 3 112 0 9 1267 242 245 10 48 chr3 89434999 89435102 -70164681 + GA-rich Low_complexity Low_complexity 4 102 0 9 1267 208 265 0 0 chr3 89438952 89439002 -70160781 - L2b LINE L2 -5 3382 3328 9 1267 530 281 44 0 chr3 89439276 89439390 -70160393 + RSINE1 SINE B4 4 122 -43 9 1267 243 61 0 0 chr3 89439390 89439423 -70160360 + (CATAT)n Simple_repeat Simple_repeat 3 35 0 9 1267 292 298 83 21 chr3 89439437 89439533 -70160250 - MLT1F2 LTR MaLR -52 508 407 9 1267 255 385 9 9 chr3 89439731 89439836 -70159947 - MLT1F2 LTR MaLR -391 169 65 9 1267 269 324 19 47 chr3 89439833 89439940 -70159843 - MLT1F2 LTR MaLR -448 112 9 9 1267 1020 276 97 47 chr3 89440117 89440456 -70159327 - MTEa LTR MaLR 0 379 24 9 1267 671 246 97 39 chr3 89440533 89440699 -70159084 - ID_B1 SINE B4 -4 220 42 9 1267 1821 208 11 19 chr3 89440699 89441076 -70158707 - ORR1D1 LTR MaLR 0 374 1 9 1267 671 246 97 39 chr3 89441076 89441116 -70158667 - ID SINE ID -183 41 2 9 1267 382 258 65 0 chr3 89441213 89441306 -70158477 - PB1D10 SINE Alu -5 112 14 9 1267 477 327 42 42 chr3 89441419 89441796 -70157987 - HAL1 LINE L1 -154 2353 1977 9 1267 2440 151 45 2 chr3 89441963 89442367 -70157416 + MTC LTR MaLR 1 421 0 9 1267 1087 168 108 5 chr3 89442406 89442609 -70157174 - URR1A DNA MER1_type -2 224 1 9 1267 1320 217 107 26 chr3 89442679 89442798 -70156985 - ORR1D1 LTR MaLR 0 374 229 9 1267 324 0 0 0 chr3 89442798 89442834 -70156949 + (CAGG)n Simple_repeat Simple_repeat 4 39 0 9 1267 1320 217 107 26 chr3 89442834 89442967 -70156816 - ORR1D1 LTR MaLR -146 228 94 9 1267 2734 137 5 14 chr3 89442967 89443390 -70156393 - MTC LTR MaLR -2 419 1 9 1267 1320 217 107 26 chr3 89443390 89443482 -70156301 - ORR1D1 LTR MaLR -281 93 2 9 1267 1135 195 40 5 chr3 89443545 89443746 -70156037 - B3 SINE B2 -6 210 3 9 1267 300 303 49 98 chr3 89443750 89443995 -70155788 - HAL1 LINE L1 -938 1569 1337 9 1267 406 156 13 0 chr3 89444181 89444258 -70155525 - Lx6 LINE L1 -1 7459 7382 9 1267 365 264 28 9 chr3 89444408 89444515 -70155268 - HAL1 LINE L1 -1604 903 795 9 1267 549 30 0 0 chr3 89444610 89444677 -70155106 + (GA)n Simple_repeat Simple_repeat 1 67 0 9 1267 423 38 0 0 chr3 89445191 89445244 -70154539 + (TAGA)n Simple_repeat Simple_repeat 4 56 0 9 1267 342 0 0 0 chr3 89445327 89445365 -70154418 + (T)n Simple_repeat Simple_repeat 1 38 0 9 1267 1149 90 7 0 chr3 89445366 89445511 -70154272 - B1_Mm SINE Alu -1 146 1 9 1267 486 0 0 0 chr3 89445523 89445577 -70154206 + (TTTTG)n Simple_repeat Simple_repeat 2 55 0 9 1267 719 215 22 0 chr3 89445577 89445712 -70154071 - B1_Mur2 SINE Alu -11 138 1 9 1267 183 80 0 0 chr3 89446245 89446270 -70153513 + (CTTG)n Simple_repeat Simple_repeat 2 26 0 9 1267 243 275 43 80 chr3 89446270 89446432 -70153351 - MIRb SINE MIR -110 158 3 9 1267 531 307 128 45 chr3 89447968 89448210 -70151573 - MLT1A1 LTR MaLR -3 405 144 9 1267 314 276 13 0 chr3 89448209 89448285 -70151498 + ID_B1 SINE B4 81 157 -67 9 1267 267 31 0 0 chr3 89448332 89448364 -70151419 + (TAAAA)n Simple_repeat Simple_repeat 4 35 0 9 1267 230 239 155 0 chr3 89448369 89448440 -70151343 - MLT1A1 LTR MaLR -273 135 54 9 1267 848 196 7 7 chr3 89448489 89448638 -70151145 + B1_Mur1 SINE Alu 1 149 0 9 1267 486 0 0 0 chr3 89448946 89449000 -70150783 + (GA)n Simple_repeat Simple_repeat 1 54 0 9 1267 189 0 0 0 chr3 89449554 89449575 -70150208 + (AGGGGG)n Simple_repeat Simple_repeat 3 23 0 9 1267 573 274 58 7 chr3 89453553 89453707 -70146076 + RSINE1 SINE B4 4 165 0 9 1267 418 266 11 0 chr3 89456706 89456800 -70142983 + PB1D7 SINE Alu 25 119 -1 9 1267 306 233 41 0 chr3 89457478 89457551 -70142232 + (CCCCAG)n Simple_repeat Simple_repeat 4 79 0 9 1267 196 283 128 40 chr3 89459685 89459810 -70139973 - MIR3 SINE MIR -1 207 72 9 1267 248 344 72 36 chr3 89459890 89460056 -70139727 - Tigger16b DNA Tigger -107 230 59 9 1267 698 259 13 20 chr3 89460593 89460743 -70139040 + RSINE1 SINE B4 4 152 -13 9 1267 418 226 112 9 chr3 89461041 89461157 -70138626 + B1F SINE Alu 3 130 -19 9 1267 201 329 13 0 chr3 89461187 89461263 -70138520 + L2a LINE L2 3340 3416 -10 9 1267 758 233 0 14 chr3 89461487 89461635 -70138148 + B1_Mur2 SINE Alu 1 146 -3 9 1267 185 211 133 50 chr3 89462412 89462472 -70137311 - L4 LINE RTE -705 1324 1260 9 1267 191 298 75 26 chr3 89462620 89462725 -70137058 + MIRc SINE MIR 63 168 -94 9 1267 347 343 0 21 chr3 89462918 89463021 -70136762 + (TG)n Simple_repeat Simple_repeat 2 104 0 9 1267 414 0 0 0 chr3 89463021 89463067 -70136716 + (TATG)n Simple_repeat Simple_repeat 2 47 0 9 1267 347 308 0 8 chr3 89463067 89463285 -70136498 + (TG)n Simple_repeat Simple_repeat 1 216 0 9 1267 207 167 0 0 chr3 89465399 89465441 -70134342 + (CA)n Simple_repeat Simple_repeat 1 42 0 9 1267 303 227 0 0 chr3 89465509 89465606 -70134177 + (CA)n Simple_repeat Simple_repeat 2 98 0 9 1267 228 303 22 90 chr3 89465629 89465897 -70133886 - RLTR21 LTR ERVK -257 1315 1066 9 1267 381 295 107 0 chr3 89465908 89466030 -70133753 + B1F SINE Alu 1 135 -14 9 1267 1033 107 4 12 chr3 89466079 89466330 -70133453 + (GAAA)n Simple_repeat Simple_repeat 1 248 0 9 1267 744 74 0 0 chr3 89467171 89467279 -70132504 + (TG)n Simple_repeat Simple_repeat 2 109 0 9 1267 538 302 61 12 chr3 89468414 89468578 -70131205 + B4A SINE B4 106 277 -15 9 1267 318 26 0 0 chr3 89468617 89468656 -70131127 + (CA)n Simple_repeat Simple_repeat 2 40 0 9 1267 333 0 0 0 chr3 89468656 89468692 -70131091 + (GA)n Simple_repeat Simple_repeat 2 38 0 9 1267 202 301 203 0 chr3 89469080 89469233 -70130550 + MIRc SINE MIR 83 266 -2 9 1267 792 172 211 21 chr3 89469601 89469791 -70129992 - URR1A DNA MER1_type 0 226 1 9 1267 356 0 0 22 chr3 89469837 89469882 -70129901 + (CACAC)n Simple_repeat Simple_repeat 1 44 0 9 1267 730 206 28 14 chr3 89470633 89470776 -70129007 + B1_Mur2 SINE Alu 5 149 0 9 1267 183 129 0 0 chr3 89472244 89472275 -70127508 + (AGGGGG)n Simple_repeat Simple_repeat 2 32 0 9 1267 23 68 0 0 chr3 89476357 89476401 -70123382 + AT_rich Low_complexity Low_complexity 1 44 0 9 1267 417 305 78 0 chr3 89477972 89478126 -70121657 + MER5A1 DNA MER1_type 1 166 0 9 1267 260 200 0 14 chr3 89478814 89478885 -70120898 + (CATATA)n Simple_repeat Simple_repeat 3 72 0 9 1267 234 91 0 0 chr3 89480239 89480272 -70119511 + (T)n Simple_repeat Simple_repeat 1 33 0 9 1267 821 66 0 0 chr3 89480272 89480378 -70119405 - B1_Mm SINE Alu 0 147 42 9 1267 261 143 0 111 chr3 89480330 89480393 -70119390 - 4.5SRNA scRNA scRNA -8 86 31 9 1267 182 283 97 39 chr3 89480501 89480604 -70119179 + MIR SINE MIR 88 196 -66 9 1267 483 300 88 57 chr3 89480989 89481272 -70118511 - B4A SINE B4 0 292 1 9 1267 550 163 0 11 chr3 89481305 89481392 -70118391 + PB1D9 SINE Alu 1 86 -34 9 1267 1017 148 0 0 chr3 89481921 89482070 -70117713 - B1_Mur4 SINE Alu 0 150 2 9 1267 1999 141 13 82 chr3 89482426 89482805 -70116978 - ORR1B1 LTR MaLR 0 394 42 9 1267 1158 194 19 19 chr3 89482875 89483090 -70116693 + B3 SINE B2 1 215 -1 9 1267 1222 224 71 51 chr3 89483204 89483515 -70116268 - MTEa LTR MaLR -62 317 1 9 1267 504 0 0 0 chr3 89483657 89483713 -70116070 + (TG)n Simple_repeat Simple_repeat 1 56 0 9 1267 384 341 31 8 chr3 89485229 89485356 -70114427 + MER21B LTR ERV1 20 149 -714 9 1267 244 314 103 11 chr3 89485630 89485717 -70114066 + PB1 SINE Alu 1 95 -32 9 1267 878 152 46 46 chr3 89487156 89487329 -70112454 + URR1A DNA MER1_type 54 226 0 9 1267 250 236 51 89 chr3 89487566 89487645 -70112138 + MIRb SINE MIR 27 102 -166 9 1267 337 280 0 13 chr3 89487814 89487889 -70111894 + PB1D10 SINE Alu 3 76 -41 9 1267 753 276 26 0 chr3 89487889 89487970 -70111813 + B4A SINE B4 2 87 -205 9 1267 327 265 90 62 chr3 89487970 89488115 -70111668 + B1_Mur3 SINE Alu 1 149 0 1 1267 354 23 0 0 chr3 89488134 89488177 -70111606 + (CA)n Simple_repeat Simple_repeat 1 43 0 1 1267 474 18 0 0 chr3 89488188 89488243 -70111540 + (TC)n Simple_repeat Simple_repeat 1 55 0 1 1267 450 0 0 0 chr3 89488243 89488292 -70111491 + (CA)n Simple_repeat Simple_repeat 1 50 0 1 1267 296 297 9 98 chr3 89488337 89488449 -70111334 - B1F1 SINE Alu -43 106 5 1 1267 254 228 12 81 chr3 89488605 89488691 -70111092 + L2c LINE L2 3299 3378 -9 1 1267 648 197 59 67 chr3 89488848 89489019 -70110764 - B3A SINE B2 -1 197 47 1 1267 450 0 0 0 chr3 89489091 89489141 -70110642 + (CA)n Simple_repeat Simple_repeat 1 50 0 1 1267 395 36 18 0 chr3 89490425 89490439 -70109344 + (TC)n Simple_repeat Simple_repeat 2 16 0 1 1267 858 109 0 0 chr3 89490439 89490567 -70109216 + (TCCCC)n Simple_repeat Simple_repeat 4 131 0 1 1267 395 36 18 0 chr3 89490567 89490607 -70109176 + (TC)n Simple_repeat Simple_repeat 2 41 0 1 1267 1233 55 0 0 chr3 89490607 89490753 -70109030 - B1_Mm SINE Alu 0 147 2 1 1267 752 289 65 16 chr3 89490814 89491097 -70108686 + MTE2b LTR MaLR 1 326 -93 1 1267 468 232 51 90 chr3 89491112 89491268 -70108515 + MTE2b LTR MaLR 190 339 -40 1 1267 426 178 0 0 chr3 89491270 89491360 -70108423 + CT-rich Low_complexity Low_complexity 2 91 0 1 1267 202 226 125 31 chr3 89492082 89492146 -70107637 + MIRb SINE MIR 133 202 -66 1 1267 666 264 12 6 chr3 89492153 89492313 -70107470 + MER5A DNA MER1_type 21 181 -8 1 1267 405 0 0 0 chr3 89493573 89493618 -70106165 + (TG)n Simple_repeat Simple_repeat 1 45 0 1 1267 244 279 49 0 chr3 89493627 89493749 -70106034 + L1MC4 LINE L1 6949 7076 -966 1 1267 740 289 97 39 chr3 89493786 89494045 -70105738 + B4A SINE B4 1 274 -18 1 1267 917 215 104 179 chr3 89494171 89494272 -70105511 - ORR1D1 LTR MaLR 0 374 271 1 1267 1231 54 0 0 chr3 89494272 89494419 -70105364 + B1_Mus1 SINE Alu 1 147 -1 1 1267 917 215 104 179 chr3 89494419 89494719 -70105064 - ORR1D1 LTR MaLR -104 270 3 1 1267 477 204 78 39 chr3 89494755 89494857 -70104926 - RSINE1 SINE B4 -58 107 2 1 1267 255 369 60 30 chr3 89494857 89494986 -70104797 - B4 SINE B4 -143 149 17 1 1267 273 22 65 0 chr3 89495012 89495058 -70104725 + (CA)n Simple_repeat Simple_repeat 1 49 0 1 1267 390 42 0 0 chr3 89495061 89495109 -70104674 + (TC)n Simple_repeat Simple_repeat 1 48 0 1 1267 333 0 0 0 chr3 89495109 89495145 -70104638 + (CA)n Simple_repeat Simple_repeat 1 37 0 1 1267 213 247 55 66 chr3 89495183 89495274 -70104509 + PB1D7 SINE Alu 10 99 -21 1 1267 1154 50 43 0 chr3 89496392 89496533 -70103250 + B1_Mus1 SINE Alu 2 148 0 1 1267 198 0 0 0 chr3 89496533 89496555 -70103228 + (A)n Simple_repeat Simple_repeat 1 22 0 1 1267 432 0 0 0 chr3 89496555 89496603 -70103180 + (TA)n Simple_repeat Simple_repeat 2 49 0 1 1267 821 200 0 0 chr3 89496939 89497074 -70102709 - B3 SINE B2 -80 136 2 1 1267 432 264 33 0 chr3 89497384 89497475 -70102308 + PB1D7 SINE Alu 22 115 -5 1 1267 239 207 206 54 chr3 89497471 89497563 -70102220 - MER110A LTR ERV1 -168 300 195 1 1267 1173 139 28 19 chr3 89497616 89497829 -70101954 - ORR1D1 LTR MaLR -2 372 158 1 1267 373 107 26 26 chr3 89497829 89497906 -70101877 + GA-rich Low_complexity Low_complexity 1 77 0 1 1267 1090 130 11 38 chr3 89497907 89498091 -70101692 - ORR1D1 LTR MaLR -193 181 3 1 1267 616 348 42 107 chr3 89498107 89498159 -70101624 - MT2A LTR ERVL 0 533 484 1 1267 189 0 0 0 chr3 89498159 89498180 -70101603 + (CA)n Simple_repeat Simple_repeat 2 22 0 1 1267 616 348 42 107 chr3 89498180 89498681 -70101102 - MT2A LTR ERVL -50 483 16 1 1267 263 127 40 40 chr3 89498773 89498847 -70100936 + T-rich Low_complexity Low_complexity 5 78 0 1 1267 1575 33 6 0 chr3 89498922 89499105 -70100678 + B2_Mm1a SINE B2 2 185 -8 1 1267 222 360 40 0 chr3 89500789 89500889 -70098894 - MIRc SINE MIR -65 203 100 1 1267 316 328 88 0 chr3 89500890 89501015 -70098768 + B4 SINE B4 149 284 -8 2 1267 244 245 14 0 chr3 89501030 89501173 -70098610 + (CA)n Simple_repeat Simple_repeat 2 146 0 3 1267 502 206 120 78 chr3 89501597 89501739 -70098044 - B1F SINE Alu 0 149 2 4 1267 732 271 32 122 chr3 89501781 89502390 -70097393 - L1_Mur3 LINE L1 -102 5775 5263 5 1267 251 250 160 6 chr3 89502372 89502541 -70097242 - L1_Mur3 LINE L1 -1031 5112 4918 5 1267 346 246 48 37 chr3 89502634 89502780 -70097003 + PB1D10 SINE Alu 1 143 -4 6 1267 428 276 131 46 chr3 89502789 89502803 -70096980 + ID SINE ID 2 15 -209 7 1267 833 80 248 45 chr3 89502803 89502960 -70096823 + B2_Mm2 SINE B2 1 189 -6 8 1267 428 276 131 46 chr3 89502960 89503120 -70096663 + ID_B1 SINE B4 16 190 -34 7 1267 2804 93 18 8 chr3 89503143 89503531 -70096252 - ORR1B1 LTR MaLR -2 392 1 9 1267 745 225 150 0 chr3 89504045 89504232 -70095551 + B3 SINE B2 2 216 0 1 1267 664 254 28 28 chr3 89504237 89504484 -70095299 + L1MB7 LINE L1 2832 3078 -3930 1 1267 235 211 70 0 chr3 89505024 89505095 -70094688 + L1MB7 LINE L1 3572 3647 -3687 1 1267 995 179 102 5 chr3 89505118 89505315 -70094468 + B3 SINE B2 1 216 0 1 1267 659 162 68 8 chr3 89505321 89505439 -70094344 + B1_Mus1 SINE Alu 12 136 -12 1 1267 582 54 0 0 chr3 89505439 89505513 -70094270 + (GAAA)n Simple_repeat Simple_repeat 3 76 0 1 1267 955 232 57 0 chr3 89505527 89505721 -70094062 + B3 SINE B2 6 210 -6 1 1267 735 260 13 0 chr3 89505734 89505884 -70093899 - RSINE1 SINE B4 -12 153 2 1 1267 26 0 0 0 chr3 89506074 89506100 -70093683 + AT_rich Low_complexity Low_complexity 1 26 0 1 1267 262 274 9 120 chr3 89506108 89506216 -70093567 + ID_B1 SINE B4 128 223 -1 1 1267 246 208 34 135 chr3 89506262 89506351 -70093432 - ID4 SINE ID -3 80 1 1 1267 327 296 143 8 chr3 89506609 89506735 -70093048 + L1MB7 LINE L1 5766 5908 -1098 1 1267 558 221 106 8 chr3 89506789 89506912 -70092871 + B1F SINE Alu 9 143 -6 2 1267 591 285 61 33 chr3 89506955 89507169 -70092614 + B4A SINE B4 68 287 -5 2 1267 327 240 61 20 chr3 89507299 89507398 -70092385 + B1F SINE Alu 9 112 -8 2 1267 286 296 31 94 chr3 89507528 89507655 -70092128 - RMER15 LTR ERVL -36 539 421 2 1267 663 312 47 87 chr3 89508276 89508739 -70091044 + L1MB7 LINE L1 6318 6769 -275 1 1267 383 211 84 28 chr3 89508739 89508846 -70090937 + PB1D10 SINE Alu 3 115 -2 2 1267 663 312 47 87 chr3 89508846 89508937 -70090846 + L1MB7 LINE L1 6770 6850 -194 1 1267 765 184 335 0 chr3 89508940 89509098 -70090685 + B3 SINE B2 1 211 -5 2 1267 259 270 59 34 chr3 89509165 89509284 -70090499 + L1MB7 LINE L1 6880 7001 -43 1 1267 378 247 93 0 chr3 89509467 89509564 -70090219 - ID_B1 SINE B4 -66 158 53 2 1267 248 233 135 14 chr3 89509900 89509974 -70089809 - B1F2 SINE Alu -55 94 12 2 1267 2265 42 267 9 chr3 89509999 89510314 -70089469 + MTA_Mm LTR MaLR 1 396 0 2 1267 2482 127 65 8 chr3 89510316 89510714 -70089069 + MTC LTR MaLR 1 421 0 2 1267 651 249 98 7 chr3 89510769 89511044 -70088739 + L1MC LINE L1 5010 5309 -837 3 1267 1444 140 5 9 chr3 89511044 89511260 -70088523 + B3 SINE B2 2 216 0 3 1267 816 103 17 0 chr3 89511271 89511388 -70088395 - RMER19A LTR ERVK 0 737 619 3 1267 2456 104 0 0 chr3 89511395 89511722 -70088061 + ORR1A2 LTR MaLR 1 327 0 3 1267 467 86 14 0 chr3 89511733 89511803 -70087980 - RMER19A LTR ERVK -666 71 1 3 1267 237 201 0 0 chr3 89511840 89511892 -70087891 + L1MC LINE L1 5318 5369 -777 3 1267 215 211 0 0 chr3 89512399 89512437 -70087346 + (TCTG)n Simple_repeat Simple_repeat 2 39 0 3 1267 1163 203 10 0 chr3 89512458 89512665 -70087118 - B3 SINE B2 -4 212 4 3 1267 696 255 0 43 chr3 89512676 89512840 -70086943 - ID_B1 SINE B4 -4 220 64 3 1267 306 0 0 0 chr3 89512890 89512924 -70086859 + (TG)n Simple_repeat Simple_repeat 1 34 0 3 1267 578 136 125 10 chr3 89513011 89513115 -70086668 - PB1D9 SINE Alu -2 118 3 3 1267 689 200 0 15 chr3 89513140 89513272 -70086511 - B1_Mur2 SINE Alu -1 148 19 3 1267 310 293 40 119 chr3 89513144 89513295 -70086488 - B4A SINE B4 -68 224 86 4 1267 302 301 140 0 chr3 89513276 89513369 -70086414 - B1F1 SINE Alu -23 126 21 4 1267 243 0 0 0 chr3 89513439 89513466 -70086317 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 4 1267 378 242 124 24 chr3 89513579 89513748 -70086035 + L1MEe LINE L1 2272 2457 -3709 4 1267 312 280 80 69 chr3 89513899 89513928 -70085855 + B4A SINE B4 57 159 -133 4 1267 669 170 51 15 chr3 89513928 89514065 -70085718 + B1_Mus1 SINE Alu 7 148 0 4 1267 312 280 80 69 chr3 89514065 89514087 -70085696 + B4A SINE B4 160 246 -46 4 1267 496 260 79 0 chr3 89514196 89514323 -70085460 + ID_B1 SINE B4 84 220 -4 4 1267 245 326 15 29 chr3 89514346 89514482 -70085301 + L1MEe LINE L1 2518 2651 -3495 4 1267 296 326 0 32 chr3 89514989 89515084 -70084699 + LTR55 LTR ERV 35 126 -422 4 1267 220 167 0 77 chr3 89515090 89515142 -70084641 - PB1 SINE Alu -1 126 79 4 1267 268 246 164 40 chr3 89516026 89516178 -70083605 + LTR55 LTR ERV 339 509 -39 4 1267 663 218 14 34 chr3 89517335 89517482 -70082301 - RMER15 LTR ERVL -3 572 429 4 1267 269 296 8 80 chr3 89517550 89517675 -70082108 - RMER15 LTR ERVL -416 159 44 4 1267 879 173 0 0 chr3 89517646 89517785 -70081998 - B1_Mus1 SINE Alu 0 148 10 5 1267 441 299 44 75 chr3 89517649 89517808 -70081975 - B4 SINE B4 -69 223 70 5 1267 892 241 14 10 chr3 89518370 89518579 -70081204 - B3 SINE B2 -6 210 1 5 1267 211 273 55 0 chr3 89519896 89519951 -70079832 + MIRb SINE MIR 135 192 -76 5 1267 416 282 194 6 chr3 89520161 89520336 -70079447 - MIR SINE MIR -18 244 37 5 1267 2422 142 40 2 chr3 89521027 89521428 -70078355 + MTC LTR MaLR 6 421 0 5 1267 374 246 16 58 chr3 89521567 89521688 -70078095 - PB1D10 SINE Alu -1 116 1 5 1267 348 266 100 111 chr3 89521985 89522175 -70077608 - MLT1K LTR MaLR -13 582 395 5 1268 958 272 46 122 chr3 89522597 89523007 -70076776 + MTE2a LTR MaLR 1 379 0 5 1268 929 172 7 0 chr3 89523044 89523189 -70076594 - B1_Mus1 SINE Alu -1 147 2 5 1268 554 139 40 24 chr3 89523215 89523322 -70076461 - L1_Mus3 LINE L1 -1 6637 6532 6 1268 550 213 139 0 chr3 89523322 89523444 -70076339 - B1F2 SINE Alu -6 143 5 6 1268 554 139 40 24 chr3 89523444 89523461 -70076322 - L1_Mus3 LINE L1 -107 6531 6512 6 1268 192 365 104 0 chr3 89523590 89523686 -70076097 + L2b LINE L2 3270 3375 0 6 1268 438 227 79 35 chr3 89523863 89523977 -70075806 - PB1 SINE Alu -8 119 1 6 1268 181 233 0 23 chr3 89524055 89524099 -70075684 - MIRm SINE MIR -13 263 221 6 1268 186 43 0 0 chr3 89524112 89524135 -70075648 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 6 1268 942 190 73 20 chr3 89524312 89524516 -70075267 + B3 SINE B2 1 215 -1 6 1268 325 259 12 12 chr3 89525051 89525133 -70074650 + ID4 SINE ID 1 82 -1 6 1268 1073 120 172 5 chr3 89525859 89526051 -70073732 + URR1B DNA MER1_type 1 224 -1 6 1268 254 206 103 0 chr3 89526172 89526240 -70073543 + ID SINE ID 1 75 -149 6 1268 1021 182 35 30 chr3 89526431 89526629 -70073154 - B3 SINE B2 -15 201 3 7 1268 23 0 0 0 chr3 89526638 89526661 -70073122 + AT_rich Low_complexity Low_complexity 1 23 0 7 1268 512 319 11 57 chr3 89526666 89526737 -70073046 + B3A SINE B2 1 72 -126 7 1268 2393 92 0 21 chr3 89526737 89527070 -70072713 + ORR1A3 LTR MaLR 1 326 0 7 1268 512 319 11 57 chr3 89527070 89527159 -70072624 + B3A SINE B2 73 155 -43 7 1268 414 0 0 0 chr3 89527159 89527205 -70072578 + (TC)n Simple_repeat Simple_repeat 2 47 0 7 1268 450 0 0 0 chr3 89527205 89527254 -70072529 + (TG)n Simple_repeat Simple_repeat 1 50 0 7 1268 512 263 55 134 chr3 89527254 89527293 -70072490 + B3A SINE B2 149 185 -10 7 1268 288 281 129 30 chr3 89527367 89527499 -70072284 + Tigger5 DNA MER2_type 1 145 -2261 7 1268 307 271 158 7 chr3 89527906 89528058 -70071725 - L1ME2 LINE L1 -102 6062 5888 7 1268 547 262 37 45 chr3 89528061 89528223 -70071560 - ID_B1 SINE B4 -48 244 81 7 1268 373 81 32 0 chr3 89528237 89528299 -70071484 + (TG)n Simple_repeat Simple_repeat 2 65 0 7 1268 587 135 72 63 chr3 89528330 89528441 -70071342 + PB1D9 SINE Alu 8 119 -1 8 1268 963 260 89 31 chr3 89528499 89528757 -70071026 - B4A SINE B4 -11 281 9 8 1268 450 172 118 0 chr3 89528851 89528944 -70070839 + PB1D9 SINE Alu 5 108 -12 8 1268 252 0 0 0 chr3 89528944 89528972 -70070811 + (TAAAA)n Simple_repeat Simple_repeat 2 29 0 8 1268 719 236 98 123 chr3 89528977 89529262 -70070521 + B4 SINE B4 1 278 -14 8 1268 2329 82 9 19 chr3 89529670 89529991 -70069792 - ORR1A3 LTR MaLR -8 318 1 8 1268 480 199 35 0 chr3 89529991 89530095 -70069688 - B3A SINE B2 -57 159 1 8 1268 512 256 15 67 chr3 89530138 89530272 -70069511 - B1_Mur1 SINE Alu -22 127 1 8 1268 240 263 229 10 chr3 89530278 89530374 -70069409 - PB1D9 SINE Alu 0 120 4 8 1268 181 333 0 0 chr3 89530403 89530454 -70069329 - L2b LINE L2 -4 3371 3321 8 1268 390 208 9 129 chr3 89530902 89531018 -70068765 - PB1D7 SINE Alu 0 120 19 9 1268 236 315 34 51 chr3 89531186 89531303 -70068480 - MLT1D LTR MaLR -158 347 233 9 1268 365 227 0 0 chr3 89531373 89531388 -70068395 + B4 SINE B4 72 86 -206 9 1268 411 169 0 0 chr3 89531388 89531453 -70068330 + PB1D10 SINE Alu 2 66 -51 9 1268 614 107 39 10 chr3 89531709 89531813 -70067970 + B1_Mur4 SINE Alu 44 150 0 9 1268 381 248 35 95 chr3 89532556 89532672 -70067111 + ID_B1 SINE B4 114 222 -2 9 1268 1376 74 23 0 chr3 89532835 89533011 -70066772 + B2_Mm2 SINE B2 1 180 -15 9 1268 269 250 83 74 chr3 89535358 89535466 -70064317 - PB1D9 SINE Alu -1 119 11 9 1268 261 316 65 97 chr3 89535391 89535545 -70064238 - ID_B1 SINE B4 -53 171 23 9 1268 279 0 0 0 chr3 89535546 89535577 -70064206 + (TG)n Simple_repeat Simple_repeat 2 32 0 9 1268 314 207 132 12 chr3 89535598 89535701 -70064082 + PB1D9 SINE Alu 34 145 -2 1 1268 257 330 43 26 chr3 89535833 89535864 -70063919 - BC1_Mm scRNA scRNA -34 118 2 1 1268 453 226 0 0 chr3 89535864 89535948 -70063835 - B4A SINE B4 -207 85 2 1 1268 324 0 0 0 chr3 89535954 89535990 -70063793 + (TG)n Simple_repeat Simple_repeat 2 37 0 1 1268 329 43 21 0 chr3 89536368 89536415 -70063368 + (TC)n Simple_repeat Simple_repeat 2 49 0 1 1268 569 196 311 6 chr3 89536671 89536835 -70062948 + B3 SINE B2 2 215 -1 1 1268 2461 91 38 59 chr3 89538104 89538477 -70061306 + RLTR8 LTR ERVK 1 365 0 1 1268 1234 133 73 45 chr3 89540793 89541013 -70058770 - URR1A DNA MER1_type 0 226 1 1 1268 519 216 129 0 chr3 89541689 89541805 -70057978 + B1_Mur2 SINE Alu 3 133 -16 1 1268 254 229 270 32 chr3 89542292 89542525 -70057258 - MT2A LTR ERVL 0 554 255 1 1268 353 294 93 29 chr3 89542493 89542633 -70057150 - MT2A LTR ERVL -256 277 129 1 1268 342 316 50 31 chr3 89542610 89542770 -70057013 - MTD LTR MaLR -256 163 1 1 1268 362 231 152 9 chr3 89542880 89542985 -70056798 + PB1D7 SINE Alu 1 120 0 1 1268 255 31 0 0 chr3 89544579 89544611 -70055172 + (CTTG)n Simple_repeat Simple_repeat 2 33 0 1 1268 753 254 48 11 chr3 89544612 89544799 -70054984 - B3 SINE B2 -7 209 16 1 1268 487 205 114 38 chr3 89544908 89545040 -70054743 + B1_Mur2 SINE Alu 1 142 -7 1 1268 3079 35 30 0 chr3 89545715 89546087 -70053696 + L1Md_F2 LINE L1 6200 6582 0 1 1268 882 296 56 8 chr3 89546231 89546483 -70053300 + MER2 DNA MER2_type 82 345 0 1 1268 306 260 276 13 chr3 89547123 89547275 -70052508 + B3A SINE B2 2 193 -5 1 1268 284 286 117 16 chr3 89547302 89547430 -70052353 + MER3 DNA MER1_type 69 209 0 1 1268 962 94 8 0 chr3 89547910 89548038 -70051745 - B1_Mus1 SINE Alu -19 129 1 1 1268 2564 86 132 0 chr3 89548050 89548422 -70051361 - BGLII LTR ERVK 0 421 1 1 1268 234 274 0 0 chr3 89548445 89548496 -70051287 + ID4 SINE ID 4 54 -29 1 1268 617 236 115 104 chr3 89548590 89548869 -70050914 - B4 SINE B4 -8 284 3 1 1268 522 275 171 20 chr3 89548880 89549132 -70050651 + MER113 DNA MER1_type 189 478 -43 1 1268 586 244 72 0 chr3 89552016 89552209 -70047574 + L1MB8 LINE L1 5759 5965 -213 1 1268 255 281 0 50 chr3 89552452 89552632 -70047151 + (CCCCAG)n Simple_repeat Simple_repeat 4 174 0 1 1268 330 87 0 0 chr3 89552853 89552899 -70046884 + (CA)n Simple_repeat Simple_repeat 1 46 0 1 1268 185 244 67 0 chr3 89553229 89553274 -70046509 + MIRm SINE MIR 211 258 -18 1 1268 1217 60 0 0 chr3 89553282 89553433 -70046350 + B2_Mm2 SINE B2 11 161 -34 1 1268 477 0 0 0 chr3 89553433 89553486 -70046297 + (TAAA)n Simple_repeat Simple_repeat 1 53 0 1 1268 691 265 101 23 chr3 89562754 89563071 -70036712 + MTEa LTR MaLR 18 379 0 1 1268 202 318 55 18 chr3 89563071 89563180 -70036603 - L2b LINE L2 -301 3074 2962 1 1268 415 348 38 47 chr3 89563226 89563567 -70036216 - L2b LINE L2 -669 2750 2413 1 1268 496 217 100 0 chr3 89566684 89566804 -70032979 + B1_Mur1 SINE Alu 10 141 -8 1 1268 272 219 291 30 chr3 89569162 89569327 -70030456 + MLT1K LTR MaLR 384 591 -4 1 1268 333 289 0 0 chr3 89569776 89569859 -70029924 + ID4_ SINE ID 1 83 0 1 1268 1338 57 0 0 chr3 89571092 89571375 -70028408 + (CA)n Simple_repeat Simple_repeat 1 283 0 1 1268 715 205 55 78 chr3 89571769 89571986 -70027797 + B3 SINE B2 1 212 -4 1 1268 1224 81 0 61 chr3 89572058 89572255 -70027528 - B2_Mm2 SINE B2 -9 186 2 1 1268 34 79 0 0 chr3 89572263 89572339 -70027444 + AT_rich Low_complexity Low_complexity 1 76 0 1 1268 748 201 14 20 chr3 89572363 89572510 -70027273 - B1_Mus1 SINE Alu -2 146 1 1 1268 2335 189 301 31 chr3 89573148 89573891 -70025892 - RMER21A LTR ERV1 -3 944 1 1 1268 437 173 49 0 chr3 89574013 89574094 -70025689 - PB1D10 SINE Alu -2 115 31 1 1268 265 317 18 46 chr3 89575046 89575155 -70024628 - RSINE1 SINE B4 -23 142 37 1 1268 276 275 150 0 chr3 89575193 89575273 -70024510 + L2b LINE L2 3271 3362 -13 1 1268 212 279 98 0 chr3 89575559 89575620 -70024163 + ID4_ SINE ID 17 83 0 1 1268 379 237 40 40 chr3 89575755 89575856 -70023927 + PB1D10 SINE Alu 1 101 -16 1 1268 183 193 83 50 chr3 89576933 89576993 -70022790 - MIRc SINE MIR -121 147 86 1 1268 24 91 0 0 chr3 89577422 89577488 -70022295 + GC_rich Low_complexity Low_complexity 1 66 0 1 1268 180 0 0 0 chr3 89577612 89577632 -70022151 + (CGGAG)n Simple_repeat Simple_repeat 1 20 0 1 1268 213 220 0 0 chr3 89577635 89577685 -70022098 + (CAG)n Simple_repeat Simple_repeat 3 52 0 1 1268 206 279 18 46 chr3 89577665 89577774 -70022009 + (CTGGGG)n Simple_repeat Simple_repeat 4 109 0 1 1268 214 287 155 19 chr3 89581427 89581530 -70018253 + MIRb SINE MIR 35 151 -117 1 1268 861 234 73 0 chr3 89581627 89581819 -70017964 - B3 SINE B2 -10 206 1 1 1268 430 278 37 9 chr3 89581830 89581939 -70017844 - ID_B1 SINE B4 -21 203 92 1 1268 394 235 128 0 chr3 89582560 89582662 -70017121 - RSINE1 SINE B4 -48 117 3 1 1268 651 229 8 0 chr3 89582933 89583064 -70016719 + B1_Mur2 SINE Alu 13 144 -5 1 1268 426 292 74 16 chr3 89583069 89583191 -70016592 + ID_B1 SINE B4 95 223 -1 1 1268 333 267 13 0 chr3 89583813 89583888 -70015895 + RSINE1 SINE B4 12 87 -78 1 1268 858 119 27 40 chr3 89584126 89584275 -70015508 - B1_Mus1 SINE Alu -1 147 1 1 1268 2566 167 24 58 chr3 89590522 89590609 -70009174 - RLTR20C LTR ERVK 0 534 446 1 1268 513 0 0 0 chr3 89590609 89590666 -70009117 + (CA)n Simple_repeat Simple_repeat 2 58 0 1 1268 2566 167 24 58 chr3 89590666 89590734 -70009049 - RLTR20C LTR ERVK -89 445 400 1 1268 1157 61 0 0 chr3 89590734 89590882 -70008901 - B1_Mus1 SINE Alu 0 148 1 1 1268 2566 167 24 58 chr3 89590882 89591278 -70008505 - RLTR20C LTR ERVK -135 399 1 1 1268 21 0 0 0 chr3 89592043 89592064 -70007719 + AT_rich Low_complexity Low_complexity 1 21 0 1 1268 194 150 0 24 chr3 89593015 89593056 -70006727 + (CACG)n Simple_repeat Simple_repeat 4 43 0 1 1268 429 218 69 10 chr3 89593148 89593250 -70006533 + B1F1 SINE Alu 1 108 -41 1 1268 630 252 7 65 chr3 89593504 89593657 -70006126 - B1_Mur3 SINE Alu 0 149 6 1 1268 1003 115 34 96 chr3 89593799 89593947 -70005836 + URR1B DNA MER1_type 1 166 -59 1 1268 3135 44 180 2 chr3 89593947 89594381 -70005402 + RLTR1B LTR ERV1 1 511 -1 1 1268 1003 108 20 97 chr3 89594381 89594450 -70005333 + URR1B DNA MER1_type 167 223 -2 1 1268 1511 11 15 64 chr3 89594494 89594696 -70005087 + B2_Mm1a SINE B2 2 193 0 1 1268 186 273 0 0 chr3 89594720 89594764 -70005019 + L2b LINE L2 3329 3372 -3 1 1268 646 248 7 28 chr3 89594847 89594992 -70004791 - RSINE1 SINE B4 -13 152 11 1 1268 436 278 0 27 chr3 89595043 89595154 -70004629 - PB1D10 SINE Alu -6 111 4 1 1268 1104 68 0 13 chr3 89595570 89595719 -70004064 + B1_Mus2 SINE Alu 1 147 0 1 1268 342 308 104 40 chr3 89595778 89595903 -70003880 - RSINE1 SINE B4 -31 134 2 1 1268 26 0 0 0 chr3 89596104 89596130 -70003653 + AT_rich Low_complexity Low_complexity 1 26 0 1 1268 457 169 12 0 chr3 89596130 89596213 -70003570 - B1F2 SINE Alu -5 144 61 1 1268 1969 118 13 91 chr3 89596771 89597030 -70002753 + ORR1B1 LTR MaLR 41 275 -119 1 1268 1879 104 128 9 chr3 89597030 89597351 -70002432 - RLTR15 LTR ERVK 0 359 1 1 1268 1969 118 13 91 chr3 89597351 89597475 -70002308 + ORR1B1 LTR MaLR 276 394 0 1 1268 871 101 8 0 chr3 89597516 89597645 -70002138 + B2_Mm1a SINE B2 1 130 -63 1 1268 369 96 316 9 chr3 89597669 89597783 -70002000 + B2_Mm2 SINE B2 47 195 0 1 1268 185 305 242 17 chr3 89597826 89597946 -70001837 - L2a LINE L2 -281 3145 2999 1 1268 534 180 8 36 chr3 89598134 89598248 -70001535 + PB1D9 SINE Alu 1 110 -10 1 1268 263 28 0 27 chr3 89598248 89598285 -70001498 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 1 1268 534 176 9 36 chr3 89598285 89598296 -70001487 + PB1D9 SINE Alu 111 118 -2 1 1268 246 241 0 0 chr3 89598464 89598518 -70001265 + L1ME1 LINE L1 6072 6125 -54 1 1268 364 298 85 49 chr3 89598613 89598836 -70000947 - B3A SINE B2 0 216 1 1 1268 225 0 0 0 chr3 89599022 89599047 -70000736 + (TTTG)n Simple_repeat Simple_repeat 3 27 0 1 1268 339 257 133 0 chr3 89599053 89599158 -70000625 - ID_B1 SINE B4 -26 198 80 1 1268 317 259 24 12 chr3 89599454 89599558 -70000225 - PB1D10 SINE Alu -44 105 1 1 1268 790 367 121 24 chr3 89599642 89599985 -69999798 + L1MDa LINE L1 36 414 -6219 1 1268 270 0 0 0 chr3 89599985 89600015 -69999768 + (CA)n Simple_repeat Simple_repeat 2 31 0 1 1268 790 355 52 43 chr3 89600015 89600281 -69999502 + L1MDa LINE L1 415 785 -5848 1 1268 632 293 51 70 chr3 89600377 89600432 -69999351 + L1MDa LINE L1 969 1007 -5626 1 1268 765 234 69 5 chr3 89600432 89600634 -69999149 + B3 SINE B2 2 216 0 1 1268 632 293 51 70 chr3 89600634 89601052 -69998731 + L1MDa LINE L1 1008 1433 -5200 1 1268 706 22 22 0 chr3 89601053 89601145 -69998638 + (GA)n Simple_repeat Simple_repeat 1 94 0 1 1268 771 213 20 0 chr3 89601161 89601311 -69998472 + B3 SINE B2 59 211 -5 1 1268 324 137 101 180 chr3 89601350 89601379 -69998404 + PB1D9 SINE Alu 25 53 -67 1 1268 1384 39 78 0 chr3 89601379 89601539 -69998244 + B2_Mm1t SINE B2 1 160 -33 1 1268 294 29 0 0 chr3 89601539 89601574 -69998209 + (TAAA)n Simple_repeat Simple_repeat 3 37 0 1 1268 1384 39 78 0 chr3 89601574 89601592 -69998191 + B2_Mm1t SINE B2 161 191 -2 1 1268 324 137 101 180 chr3 89601592 89601651 -69998132 + PB1D9 SINE Alu 54 106 -14 1 1268 645 166 6 29 chr3 89601655 89601829 -69997954 + (TA)n Simple_repeat Simple_repeat 2 171 0 1 1268 1536 193 112 22 chr3 89602004 89602203 -69997580 + MTD LTR MaLR 6 225 -194 1 1268 1880 152 47 19 chr3 89602203 89602566 -69997217 + ORR1D1 LTR MaLR 1 373 -1 1 1268 1536 193 112 22 chr3 89602566 89602732 -69997051 + MTD LTR MaLR 226 404 -15 1 1268 945 154 0 0 chr3 89602824 89602973 -69996810 - B1_Mur3 SINE Alu 0 149 1 2 1268 4990 97 84 16 chr3 89602978 89603825 -69995958 + RMER17B LTR ERVK 1 904 -54 2 1268 2803 127 35 14 chr3 89603821 89604310 -69995473 + RLTR13D1 LTR ERVK 45 543 -359 2 1268 3753 90 12 19 chr3 89604283 89604849 -69994934 + RLTR13D1 LTR ERVK 227 788 -18 2 1268 438 273 36 7 chr3 89604977 89605117 -69994666 - B1F1 SINE Alu -5 144 1 2 1268 317 371 44 28 chr3 89605274 89605454 -69994329 - L1M5 LINE L1 -3157 2989 2807 2 1268 599 169 14 68 chr3 89606055 89606201 -69993582 - B1_Mur1 SINE Alu -11 138 1 2 1268 215 303 15 15 chr3 89606252 89606319 -69993464 - B1F SINE Alu -2 147 81 2 1268 447 19 0 0 chr3 89606351 89606403 -69993380 + (TG)n Simple_repeat Simple_repeat 2 53 0 2 1268 294 227 35 10 chr3 89606657 89606747 -69993036 + B1F SINE Alu 48 144 -5 2 1268 432 0 0 0 chr3 89607362 89607410 -69992373 + (TC)n Simple_repeat Simple_repeat 1 48 0 2 1268 189 0 0 0 chr3 89607410 89607430 -69992353 + (CA)n Simple_repeat Simple_repeat 1 21 0 2 1268 252 162 191 0 chr3 89608114 89608182 -69991601 + B1F SINE Alu 18 98 -51 2 1268 1122 79 101 11 chr3 89608191 89608370 -69991413 - B2_Mm2 SINE B2 0 195 1 2 1268 384 303 50 46 chr3 89608481 89608699 -69991084 + MER58A DNA MER1_type 1 219 -5 2 1268 35 41 0 0 chr3 89608731 89608780 -69991003 + AT_rich Low_complexity Low_complexity 1 49 0 2 1268 738 133 44 0 chr3 89608859 89608994 -69990789 - B2_Mm2 SINE B2 -19 176 36 2 1268 187 41 0 93 chr3 89609507 89609561 -69990222 + (CTAAT)n Simple_repeat Simple_repeat 4 52 0 2 1268 365 0 22 0 chr3 89609581 89609626 -69990157 + (TG)n Simple_repeat Simple_repeat 2 47 0 2 1268 2270 243 314 6 chr3 89609627 89609848 -69989935 - Lx9 LINE L1 -227 7417 7126 2 1268 846 60 0 0 chr3 89609848 89609965 -69989818 + (CA)n Simple_repeat Simple_repeat 1 117 0 2 1268 2270 247 58 22 chr3 89609965 89610711 -69989072 - Lx9 LINE L1 -519 7125 6182 2 1268 261 0 0 0 chr3 89610711 89610740 -69989043 + (CA)n Simple_repeat Simple_repeat 2 30 0 2 1268 2000 314 90 15 chr3 89610740 89610795 -69988988 - Lx9 LINE L1 -1292 6181 6131 2 1268 853 227 44 0 chr3 89610814 89611017 -69988766 - B3 SINE B2 0 216 5 2 1268 726 192 224 29 chr3 89611180 89611446 -69988337 - MTD LTR MaLR -78 318 1 2 1268 1292 20 0 0 chr3 89613032 89613179 -69986604 + B1_Mus2 SINE Alu 1 147 0 2 1268 14315 143 86 67 chr3 89613184 89614871 -69984912 - RLTR19-int LTR ERVK -2573 3564 2010 2 1268 965 168 16 42 chr3 89614871 89615064 -69984719 - B2_Mm2 SINE B2 -5 190 3 2 1268 14315 143 86 67 chr3 89615064 89616554 -69983229 - RLTR19-int LTR ERVK -4128 2009 329 2 1268 609 271 95 81 chr3 89616732 89617005 -69982778 - RMER13A LTR ERVK -583 277 1 2 1268 552 162 19 66 chr3 89617679 89617785 -69981998 + RSINE1 SINE B4 2 102 -63 2 1268 318 328 32 48 chr3 89618110 89618299 -69981484 + B4A SINE B4 102 287 -5 2 1268 224 237 34 0 chr3 89618304 89618363 -69981420 + (CA)n Simple_repeat Simple_repeat 1 61 0 2 1268 1005 82 137 19 chr3 89618375 89618536 -69981247 - B2_Mm2 SINE B2 -14 181 2 2 1268 2844 133 61 16 chr3 89619108 89619717 -69980066 - RMER6A LTR ERVK 0 690 2 2 1268 541 306 66 131 chr3 89619832 89619992 -69979791 + L1MB8 LINE L1 5522 5678 -500 2 1268 1016 214 30 0 chr3 89619992 89620193 -69979590 + B3 SINE B2 1 207 -9 2 1268 541 306 66 131 chr3 89620193 89620574 -69979209 + L1MB8 LINE L1 5672 6028 -151 2 1268 271 65 21 21 chr3 89620581 89620628 -69979155 + (GGA)n Simple_repeat Simple_repeat 3 49 0 2 1268 541 226 169 31 chr3 89620774 89620792 -69978991 - B3A SINE B2 -16 182 169 2 1268 1510 171 66 39 chr3 89620792 89621156 -69978627 + ORR1D1 LTR MaLR 1 374 0 2 1268 541 226 169 31 chr3 89621156 89621297 -69978486 - B3A SINE B2 -30 168 2 2 1268 979 110 0 40 chr3 89621374 89621526 -69978257 + B1_Mus2 SINE Alu 1 146 -1 2 1268 240 128 0 0 chr3 89621705 89621744 -69978039 - B3 SINE B2 -177 39 1 2 1268 216 333 56 40 chr3 89621838 89621963 -69977820 + MIRb SINE MIR 14 140 -128 2 1268 229 200 82 16 chr3 89622586 89622647 -69977136 - RLTR21 LTR ERVK -733 839 775 2 1268 1428 69 37 16 chr3 89623479 89623670 -69976113 + B2_Mm2 SINE B2 1 195 0 2 1268 600 178 204 31 chr3 89624209 89624371 -69975412 - B3A SINE B2 -6 192 3 2 1268 265 264 62 62 chr3 89624625 89624722 -69975061 + MLT1D LTR MaLR 137 233 -272 2 1268 195 42 0 0 chr3 89625093 89625117 -69974666 + (CGGGGG)n Simple_repeat Simple_repeat 1 24 0 2 1268 560 273 114 32 chr3 89625657 89625903 -69973880 + MLT1D LTR MaLR 240 505 0 2 1268 933 229 53 5 chr3 89625941 89626147 -69973636 - B3 SINE B2 0 216 1 2 1268 432 240 9 71 chr3 89626300 89626373 -69973410 - RCHARR1 DNA MER1_type -1 973 901 2 1268 2097 193 22 17 chr3 89626373 89626790 -69972993 - MTD LTR MaLR 0 419 1 2 1268 432 240 9 71 chr3 89626790 89626828 -69972955 - RCHARR1 DNA MER1_type -74 900 869 2 1268 799 172 7 7 chr3 89626829 89626964 -69972819 + B1_Mur4 SINE Alu 3 137 -13 2 1268 417 39 0 0 chr3 89626966 89627017 -69972766 + (GGAA)n Simple_repeat Simple_repeat 3 53 0 2 1268 408 162 0 0 chr3 89627022 89627096 -69972687 - RCHARR1 DNA MER1_type -101 873 800 2 1268 477 317 7 34 chr3 89627144 89627309 -69972474 - RSINE1 SINE B4 -4 161 2 2 1268 485 292 35 0 chr3 89627343 89627487 -69972296 + RSINE1 SINE B4 4 152 -13 2 1268 2940 117 24 16 chr3 89627488 89627940 -69971843 + RMER6B LTR ERVK 1 456 -5 2 1268 962 214 39 47 chr3 89628001 89628280 -69971503 - RCHARR1 DNA MER1_type -179 795 519 2 1268 1100 266 44 44 chr3 89628362 89628677 -69971106 - RCHARR1 DNA MER1_type -493 481 167 2 1268 244 303 101 0 chr3 89628874 89628963 -69970820 - B4 SINE B4 -191 101 4 2 1268 583 252 37 7 chr3 89629007 89629143 -69970640 + RSINE1 SINE B4 14 153 -12 2 1268 309 51 0 0 chr3 89629155 89629194 -69970589 + (CA)n Simple_repeat Simple_repeat 1 39 0 2 1268 887 249 5 28 chr3 89629207 89629418 -69970365 - B3 SINE B2 -6 210 5 2 1268 476 224 26 20 chr3 89629767 89629876 -69969907 - B1_Mur1 SINE Alu -1 148 26 2 1268 2637 146 44 42 chr3 89629919 89630440 -69969343 - RLTR11A2 LTR ERVK -4 523 2 2 1268 765 145 0 31 chr3 89630442 89630570 -69969213 - RLTR11B LTR ERVK -329 124 1 2 1268 513 296 7 0 chr3 89630598 89630740 -69969043 - ID_B1 SINE B4 0 224 82 2 1268 410 194 211 53 chr3 89631142 89631256 -69968527 + URR1B DNA MER1_type 5 136 -89 2 1268 261 238 191 69 chr3 89631203 89631334 -69968449 - URR1A DNA MER1_type -78 148 2 2 1268 249 83 0 0 chr3 89631519 89631555 -69968228 + (ATTG)n Simple_repeat Simple_repeat 1 36 0 2 1268 432 0 0 0 chr3 89631557 89631605 -69968178 + (TG)n Simple_repeat Simple_repeat 1 48 0 2 1268 521 211 8 68 chr3 89631611 89631728 -69968055 - RSINE1 SINE B4 -53 112 3 2 1268 939 144 17 0 chr3 89631847 89632088 -69967695 + CT-rich Low_complexity Low_complexity 1 245 0 2 1268 1462 171 211 10 chr3 89632092 89632275 -69967508 + ORR1C2 LTR MaLR 9 234 -150 2 1268 180 0 0 0 chr3 89632275 89632295 -69967488 + (CCTG)n Simple_repeat Simple_repeat 3 22 0 2 1268 1462 171 211 10 chr3 89632295 89632424 -69967359 + ORR1C2 LTR MaLR 235 383 -1 2 1268 270 255 126 11 chr3 89632424 89632512 -69967271 - PB1D10 SINE Alu -18 99 1 2 1268 433 293 160 64 chr3 89632603 89632748 -69967035 + L1MB7 LINE L1 5547 5705 -479 2 1268 790 188 28 7 chr3 89632748 89632893 -69966890 - B1_Mus1 SINE Alu 0 148 1 2 1268 433 293 160 64 chr3 89632893 89633123 -69966660 + L1MB7 LINE L1 5706 5958 -226 2 1268 408 247 11 0 chr3 89633133 89633222 -69966561 + MT2A LTR ERVL 2 91 -442 2 1268 303 354 35 0 chr3 89633222 89633246 -69966537 + MTE2b LTR MaLR 2 118 -261 2 1268 855 247 89 5 chr3 89633247 89633471 -69966312 + MT2A LTR ERVL 174 416 -117 2 1268 445 299 414 10 chr3 89633607 89633810 -69965973 - B4 SINE B4 -6 286 2 2 1268 363 244 0 12 chr3 89634245 89634328 -69965455 + ID4_ SINE ID 1 82 -1 2 1268 242 239 0 27 chr3 89634423 89634496 -69965287 + GA-rich Low_complexity Low_complexity 4 74 0 2 1268 22 0 0 0 chr3 89635092 89635114 -69964669 + GC_rich Low_complexity Low_complexity 1 22 0 2 1268 21 0 0 0 chr3 89635151 89635172 -69964611 + GC_rich Low_complexity Low_complexity 1 21 0 2 1268 28 0 0 0 chr3 89635571 89635599 -69964184 + GC_rich Low_complexity Low_complexity 1 28 0 2 1268 212 0 36 0 chr3 89636721 89636749 -69963034 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2 1268 1160 51 0 0 chr3 89636749 89636887 -69962896 - B1_Mus1 SINE Alu -10 138 1 2 1268 841 141 41 27 chr3 89638242 89638388 -69961395 + B1_Mur2 SINE Alu 1 148 -1 2 1268 243 0 0 0 chr3 89638447 89638474 -69961309 + (CAGA)n Simple_repeat Simple_repeat 4 30 0 2 1268 696 268 6 31 chr3 89638708 89638870 -69960913 - RSINE1 SINE B4 -6 159 2 2 1268 21 0 0 0 chr3 89638992 89639013 -69960770 + AT_rich Low_complexity Low_complexity 1 21 0 2 1268 24 32 0 0 chr3 89639710 89639741 -69960042 + AT_rich Low_complexity Low_complexity 1 31 0 2 1268 631 276 127 73 chr3 89639779 89640203 -69959580 - Lx8 LINE L1 -51 7593 7027 2 1268 369 271 87 16 chr3 89641109 89641293 -69958490 - Lx8 LINE L1 -425 7048 6852 2 1268 630 139 108 62 chr3 89641303 89641433 -69958350 + B1_Mus1 SINE Alu 5 140 -8 2 1268 474 18 0 0 chr3 89641460 89641515 -69958268 + (GA)n Simple_repeat Simple_repeat 2 56 0 2 1268 265 338 0 0 chr3 89641602 89641673 -69958110 - ID4_ SINE ID -12 71 1 2 1268 946 57 8 0 chr3 89641702 89641826 -69957957 + B1_Mus1 SINE Alu 24 148 0 2 1268 186 71 0 0 chr3 89641826 89641854 -69957929 + (A)n Simple_repeat Simple_repeat 1 28 0 2 1268 574 296 38 0 chr3 89641968 89642100 -69957683 - RSINE1 SINE B4 -17 148 12 2 1268 261 0 0 0 chr3 89642109 89642138 -69957645 + (CA)n Simple_repeat Simple_repeat 1 29 0 2 1268 704 144 46 86 chr3 89642190 89642342 -69957441 - B1_Mus2 SINE Alu 0 147 2 2 1268 399 263 30 10 chr3 89642528 89642628 -69957155 - PB1D7 SINE Alu -1 119 18 2 1268 421 265 31 0 chr3 89642816 89642914 -69956869 + B1F1 SINE Alu 1 101 -48 2 1268 1139 57 14 0 chr3 89642963 89643103 -69956680 + B1_Mur4 SINE Alu 5 146 -4 2 1268 333 0 0 0 chr3 89643103 89643140 -69956643 + (TAAA)n Simple_repeat Simple_repeat 4 40 0 2 1268 892 184 0 0 chr3 89643162 89643309 -69956474 + B1_Mur1 SINE Alu 1 147 -2 3 1268 882 143 13 45 chr3 89643330 89643484 -69956299 + B1_Mur3 SINE Alu 1 149 0 3 1268 369 318 90 8 chr3 89643617 89643750 -69956033 + B1F1 SINE Alu 1 144 -5 3 1268 555 153 0 0 chr3 89643833 89643931 -69955852 + CT-rich Low_complexity Low_complexity 3 100 0 3 1268 565 138 164 9 chr3 89643998 89644108 -69955675 - B1_Mur3 SINE Alu -18 131 5 3 1268 600 157 64 9 chr3 89644177 89644286 -69955497 - B1_Mur1 SINE Alu -13 136 22 3 1268 220 291 38 12 chr3 89644389 89644469 -69955314 - ID SINE ID -142 82 1 3 1268 394 233 0 0 chr3 89644661 89644734 -69955049 + ID4 SINE ID 11 83 0 3 1268 492 239 26 34 chr3 89644954 89645071 -69954712 + PB1 SINE Alu 6 121 -6 3 1268 282 301 120 42 chr3 89645071 89645096 -69954687 + B4 SINE B4 91 243 -49 3 1268 509 252 185 0 chr3 89645105 89645240 -69954543 + B3A SINE B2 6 165 -33 3 1268 276 247 52 0 chr3 89645945 89646022 -69953761 - ID4_ SINE ID -1 82 2 3 1268 492 154 424 73 chr3 89646295 89646436 -69953347 + B3 SINE B2 3 192 -24 3 1268 1425 81 16 0 chr3 89646436 89646621 -69953162 + B2_Mm2 SINE B2 1 188 -7 3 1268 492 162 46 100 chr3 89646621 89646644 -69953139 + B3 SINE B2 193 215 -1 3 1268 539 214 53 9 chr3 89646925 89647038 -69952745 + PB1D7 SINE Alu 2 119 -1 3 1268 819 206 105 11 chr3 89648374 89648565 -69951218 - B3 SINE B2 -6 210 2 3 1268 689 237 7 0 chr3 89649430 89649569 -69950214 - B1_Mur1 SINE Alu -9 140 1 3 1268 1291 96 11 0 chr3 89650173 89650350 -69949433 + B2_Mm1t SINE B2 1 179 -14 3 1268 358 102 358 55 chr3 89650363 89650472 -69949311 + B2_Mm2 SINE B2 47 188 -7 3 1268 837 148 0 0 chr3 89650766 89650888 -69948895 + B1_Mur4 SINE Alu 10 131 -19 3 1268 225 281 22 89 chr3 89650951 89651041 -69948742 + MT2B2 LTR ERVL 155 238 -346 3 1268 560 214 8 41 chr3 89650978 89651100 -69948683 + ID_B1 SINE B4 100 217 -7 3 1268 704 266 28 6 chr3 89651111 89651307 -69948476 + B3A SINE B2 1 203 -13 3 1268 412 219 307 0 chr3 89651308 89651445 -69948338 + B2_Mm2 SINE B2 3 181 -14 3 1268 214 158 0 0 chr3 89651446 89651484 -69948299 + GA-rich Low_complexity Low_complexity 1 38 0 3 1268 257 361 58 23 chr3 89651717 89651890 -69947893 + MIR SINE MIR 8 186 -76 3 1268 317 244 31 94 chr3 89652029 89652156 -69947627 + MT2B LTR ERVL 160 278 -323 3 1268 803 158 14 21 chr3 89652042 89652184 -69947599 + B1_Mur1 SINE Alu 9 149 0 3 1268 414 81 303 90 chr3 89652457 89652579 -69947204 - B2_Mm2 SINE B2 -1 194 47 3 1268 1232 114 11 0 chr3 89652626 89652802 -69946981 - B2_Mm1t SINE B2 -14 179 2 3 1268 1169 42 14 0 chr3 89652824 89652968 -69946815 - B1_Mus2 SINE Alu 0 147 2 3 1269 340 274 26 9 chr3 89653928 89654039 -69945744 - PB1D10 SINE Alu -1 126 1 3 1269 421 243 84 37 chr3 89654250 89654387 -69945396 + B3A SINE B2 1 147 -51 3 1269 2388 65 67 12 chr3 89654442 89654769 -69945014 - L1_Mus2 LINE L1 -1 6565 6221 3 1269 330 212 27 32 chr3 89654838 89654937 -69944846 + PB1D10 SINE Alu 10 115 -34 3 1269 728 289 36 12 chr3 89654968 89655220 -69944563 - Lx7 LINE L1 -539 7157 6900 3 1269 869 221 42 5 chr3 89655859 89656050 -69943733 - B3A SINE B2 0 198 1 3 1269 1183 142 91 5 chr3 89656735 89656933 -69942850 + B3 SINE B2 1 215 -1 3 1269 410 232 12 0 chr3 89656952 89657034 -69942749 + ID4_ SINE ID 1 83 0 3 1269 1046 208 41 0 chr3 89657089 89657286 -69942497 - B3 SINE B2 -11 205 1 3 1269 809 185 22 19 chr3 89657297 89657467 -69942316 - B1_Mur4 SINE Alu 0 311 11 3 1269 344 266 98 27 chr3 89657476 89657588 -69942195 - PB1D9 SINE Alu 0 120 1 3 1269 195 42 0 0 chr3 89658094 89658118 -69941665 + (TTA)n Simple_repeat Simple_repeat 1 24 0 3 1269 188 0 74 0 chr3 89659421 89659448 -69940335 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 3 1269 849 138 62 0 chr3 89659885 89660015 -69939768 + B1_Mur3 SINE Alu 5 142 -7 3 1269 218 281 35 0 chr3 89661166 89661223 -69938560 + PB1 SINE Alu 69 127 0 3 1269 266 244 22 34 chr3 89661297 89661380 -69938403 + 4.5SRNA scRNA scRNA 7 90 -4 3 1269 669 216 193 0 chr3 89661380 89661551 -69938232 + B3 SINE B2 2 205 -11 3 1269 188 217 0 130 chr3 89662278 89662347 -69937436 + L4 LINE RTE 1366 1425 -604 3 1269 241 233 17 0 chr3 89662794 89662854 -69936929 + (CGGT)n Simple_repeat Simple_repeat 4 64 0 3 1269 845 199 0 16 chr3 89663209 89663574 -69936209 + (TG)n Simple_repeat Simple_repeat 1 358 0 3 1269 484 219 58 8 chr3 89663580 89663700 -69936083 - B1_Mm SINE Alu -21 126 1 3 1269 189 317 53 38 chr3 89664182 89664313 -69935470 - MIRc SINE MIR -89 179 47 3 1269 321 252 66 11 chr3 89664357 89664462 -69935321 - B1F2 SINE Alu -1 116 2 3 1269 457 245 19 9 chr3 89665465 89665572 -69934211 + B1_Mur2 SINE Alu 42 149 0 3 1269 364 231 77 0 chr3 89665815 89665906 -69933877 - U6 snRNA snRNA -1 106 9 3 1269 398 265 92 0 chr3 89665924 89666022 -69933761 - PB1 SINE Alu -19 108 2 3 1269 617 176 128 15 chr3 89666075 89666208 -69933575 + B1_Mur2 SINE Alu 2 149 0 3 1269 944 114 7 0 chr3 89666592 89666741 -69933042 + (GAAA)n Simple_repeat Simple_repeat 2 151 0 3 1269 870 186 37 32 chr3 89666832 89666890 -69932893 + B2_Mm2 SINE B2 1 62 -133 3 1269 4097 55 70 9 chr3 89666890 89667418 -69932365 - LTRIS2 LTR ERV1 0 564 5 3 1269 825 186 37 32 chr3 89667418 89667548 -69932235 + B2_Mm2 SINE B2 63 190 -5 3 1269 613 167 103 29 chr3 89667589 89667725 -69932058 + B1_Mur2 SINE Alu 2 147 -2 3 1269 347 217 21 32 chr3 89668098 89668193 -69931590 + PB1D10 SINE Alu 24 117 0 3 1269 357 184 3 13 chr3 89668399 89668478 -69931305 - B3A SINE B2 -116 77 2 3 1269 410 0 20 0 chr3 89668494 89668544 -69931239 + (TTTTA)n Simple_repeat Simple_repeat 3 53 0 3 1269 902 128 13 13 chr3 89668858 89669008 -69930775 + B1_Mur4 SINE Alu 1 150 0 3 1269 3983 161 74 22 chr3 89669413 89670214 -69929569 + RLTR25B LTR ERVK 12 853 -175 3 1269 595 160 67 0 chr3 89670648 89670767 -69929016 + RLTR25B LTR ERVK 977 1103 0 3 1269 363 98 0 0 chr3 89671133 89671194 -69928589 + (TG)n Simple_repeat Simple_repeat 1 61 0 3 1269 288 286 0 45 chr3 89671216 89671304 -69928479 - PB1D9 SINE Alu -32 88 5 3 1269 198 0 0 0 chr3 89673438 89673460 -69926323 + (TAAAA)n Simple_repeat Simple_repeat 2 23 0 3 1269 366 233 56 46 chr3 89673943 89674051 -69925732 - L1MC4 LINE L1 -5339 876 768 3 1269 252 81 0 0 chr3 89675671 89675688 -69924095 + (A)n Simple_repeat Simple_repeat 1 17 0 3 1269 1185 54 0 0 chr3 89675688 89675835 -69923948 + B1_Mus2 SINE Alu 1 147 0 3 1269 252 81 0 0 chr3 89675835 89675854 -69923929 + (A)n Simple_repeat Simple_repeat 1 19 0 3 1269 1182 92 5 71 chr3 89675867 89676065 -69923718 + B2_Mm2 SINE B2 9 193 -2 3 1269 1712 102 221 9 chr3 89676963 89677280 -69922503 + ORR1C2 LTR MaLR 1 384 0 3 1269 678 267 25 30 chr3 89677495 89677692 -69922091 - B3A SINE B2 -1 197 2 3 1269 504 86 0 0 chr3 89677741 89677811 -69921972 + (CA)n Simple_repeat Simple_repeat 2 71 0 3 1269 296 228 0 0 chr3 89677826 89677883 -69921900 + ID4 SINE ID 1 57 -26 3 1269 1130 219 88 58 chr3 89677969 89678332 -69921451 + ORR1D1 LTR MaLR 1 374 0 3 1269 293 337 0 0 chr3 89678458 89678544 -69921239 - RMER30 DNA MER1_type -2 200 115 3 1269 433 269 48 28 chr3 89678729 89678874 -69920909 - B1F2 SINE Alu -1 148 1 3 1269 977 145 0 0 chr3 89679326 89679471 -69920312 - B1_Mus2 SINE Alu -2 145 1 3 1269 255 236 18 0 chr3 89679490 89679545 -69920238 + B4A SINE B4 90 145 -147 3 1269 411 245 82 0 chr3 89679496 89679594 -69920189 + PB1D10 SINE Alu 12 117 0 3 1269 238 221 162 0 chr3 89680094 89680162 -69919621 + ID4 SINE ID 1 79 -4 3 1269 903 81 11 39 chr3 89680297 89680477 -69919306 + (TCC)n Simple_repeat Simple_repeat 1 175 0 3 1269 210 71 0 0 chr3 89680690 89680718 -69919065 + (CAGTA)n Simple_repeat Simple_repeat 1 28 0 3 1269 240 233 54 14 chr3 89680842 89680916 -69918867 + GA-rich Low_complexity Low_complexity 1 77 0 3 1269 271 211 95 40 chr3 89681589 89681663 -69918120 + ID4_ SINE ID 4 81 -2 3 1269 312 198 100 40 chr3 89682896 89682996 -69916787 + PB1D7 SINE Alu 13 118 -2 3 1269 246 238 25 12 chr3 89683138 89683219 -69916564 + L1MA5 LINE L1 6219 6300 0 3 1269 328 250 17 61 chr3 89683224 89683339 -69916444 + PB1D9 SINE Alu 11 120 0 3 1269 779 226 58 26 chr3 89683366 89683557 -69916226 + B3 SINE B2 20 216 0 3 1269 22 0 0 0 chr3 89683591 89683613 -69916170 + AT_rich Low_complexity Low_complexity 1 22 0 3 1269 1149 68 0 0 chr3 89683644 89683791 -69915992 + B1_Mus2 SINE Alu 1 147 0 3 1269 277 267 62 108 chr3 89684380 89684510 -69915273 - MIR3 SINE MIR -73 135 12 3 1269 311 156 45 30 chr3 89684880 89684946 -69914837 - B1_Mur1 SINE Alu -9 140 74 3 1269 24 0 0 0 chr3 89684960 89684984 -69914799 + AT_rich Low_complexity Low_complexity 1 24 0 3 1269 737 128 96 0 chr3 89684998 89685123 -69914660 - B1_Mur4 SINE Alu -11 139 3 3 1269 218 256 0 0 chr3 89685135 89685178 -69914605 - PB1D7 SINE Alu -77 43 1 4 1269 342 0 0 0 chr3 89685207 89685245 -69914538 + (TTTTG)n Simple_repeat Simple_repeat 2 39 0 4 1269 476 262 0 137 chr3 89685254 89685422 -69914361 - B1F SINE Alu -2 147 3 4 1269 364 319 0 40 chr3 89685315 89685439 -69914344 - ID_B1 SINE B4 -37 187 69 4 1269 507 211 9 37 chr3 89685437 89685545 -69914238 - PB1D7 SINE Alu -3 117 13 4 1269 942 197 66 0 chr3 89685595 89685793 -69913990 + B3 SINE B2 1 211 -5 4 1269 181 246 71 14 chr3 89686225 89686295 -69913488 - MIR SINE MIR -125 137 64 4 1269 204 211 0 0 chr3 89686322 89686360 -69913423 + (TG)n Simple_repeat Simple_repeat 1 38 0 4 1269 354 250 23 108 chr3 89686595 89686725 -69913058 + ID_B1 SINE B4 55 173 -51 4 1269 324 287 71 32 chr3 89686812 89686938 -69912845 - MIRb SINE MIR -100 168 38 4 1269 261 0 0 0 chr3 89687573 89687602 -69912181 + (CAGA)n Simple_repeat Simple_repeat 4 32 0 4 1269 262 293 44 96 chr3 89687623 89687640 -69912143 + MT2B LTR ERVL 169 235 -366 4 1269 537 208 75 0 chr3 89687640 89687746 -69912037 + B1F2 SINE Alu 24 137 -12 4 1269 262 293 44 96 chr3 89687746 89687759 -69912024 + MT2B LTR ERVL 236 297 -304 4 1269 1033 287 48 19 chr3 89687760 89688133 -69911650 + L1MB3 LINE L1 5723 6106 -77 4 1269 445 261 16 112 chr3 89688170 89688420 -69911363 + B4 SINE B4 67 292 0 4 1269 1332 59 27 5 chr3 89688474 89688662 -69911121 + B2_Mm1a SINE B2 1 192 -1 4 1269 332 160 100 23 chr3 89688800 89688887 -69910896 - PB1D9 SINE Alu -18 132 41 4 1269 513 0 0 0 chr3 89689039 89689096 -69910687 + (TG)n Simple_repeat Simple_repeat 2 58 0 4 1269 539 229 45 22 chr3 89689569 89689703 -69910080 + ID_B1 SINE B4 78 214 -10 4 1269 241 280 70 70 chr3 89690334 89690449 -69909334 + PB1D7 SINE Alu 1 115 -5 4 1269 343 228 43 11 chr3 89692055 89692148 -69907635 - MER44D DNA MER2_type -567 138 43 4 1269 271 361 0 40 chr3 89692495 89692596 -69907187 + MIRb SINE MIR 34 130 -138 4 1269 213 121 0 0 chr3 89692669 89692702 -69907081 + (T)n Simple_repeat Simple_repeat 1 33 0 4 1269 794 208 147 5 chr3 89692793 89692977 -69906806 + B3 SINE B2 1 210 -6 4 1269 1114 112 147 5 chr3 89693420 89693617 -69906166 + URR1B DNA MER1_type 1 225 0 4 1269 573 239 7 50 chr3 89694633 89694774 -69905009 + B1_Mur1 SINE Alu 1 135 -14 4 1269 1028 101 13 0 chr3 89694776 89694935 -69904848 + (GAAAA)n Simple_repeat Simple_repeat 2 162 0 4 1269 433 189 33 0 chr3 89694953 89695043 -69904740 + PB1D9 SINE Alu 28 120 0 4 1269 255 204 236 18 chr3 89695043 89695063 -69904720 + B4A SINE B4 113 246 -46 4 1269 614 104 0 10 chr3 89695065 89695162 -69904621 + (GGGAA)n Simple_repeat Simple_repeat 1 96 0 4 1269 268 211 0 0 chr3 89695210 89695262 -69904521 + PB1D9 SINE Alu 57 108 -12 4 1269 471 35 0 0 chr3 89695262 89695319 -69904464 + (TAAAA)n Simple_repeat Simple_repeat 4 60 0 4 1269 303 140 0 0 chr3 89695882 89695932 -69903851 + (TCTG)n Simple_repeat Simple_repeat 3 52 0 4 1269 506 240 83 23 chr3 89695945 89696040 -69903743 - RSINE1 SINE B4 -22 143 46 4 1269 3165 46 5 0 chr3 89696040 89696434 -69903349 - MTA_Mm LTR MaLR 0 396 1 4 1269 506 240 83 23 chr3 89696434 89696470 -69903313 - RSINE1 SINE B4 -120 45 5 4 1269 1049 197 42 78 chr3 89696668 89696976 -69902807 + ORR1D1 LTR MaLR 1 297 -77 4 1269 464 198 147 0 chr3 89696982 89697098 -69902685 - ID_B1 SINE B4 -16 208 76 4 1269 1148 103 53 16 chr3 89697347 89697534 -69902249 + B2_Mm2 SINE B2 1 194 -1 4 1269 1507 37 5 5 chr3 89697537 89697728 -69902055 + B2_Mm1a SINE B2 1 191 -2 4 1269 1061 194 4 118 chr3 89698322 89698513 -69901270 - ORR1D1 LTR MaLR -124 250 90 4 1269 309 51 0 0 chr3 89698513 89698552 -69901231 + (TG)n Simple_repeat Simple_repeat 1 39 0 4 1269 441 0 0 0 chr3 89698552 89698600 -69901183 + (GA)n Simple_repeat Simple_repeat 1 49 0 4 1269 1061 194 4 118 chr3 89698600 89698687 -69901096 - ORR1D1 LTR MaLR -285 89 4 4 1269 427 168 156 18 chr3 89698688 89698797 -69900986 + ID_B1 SINE B4 100 223 -1 4 1269 515 211 37 56 chr3 89698802 89698963 -69900820 + RSINE1 SINE B4 4 161 -4 4 1269 240 246 0 0 chr3 89698971 89699040 -69900743 + (CA)n Simple_repeat Simple_repeat 1 69 0 4 1269 714 266 39 10 chr3 89699055 89699260 -69900523 + B4A SINE B4 19 229 -63 4 1269 451 310 98 7 chr3 89699262 89699405 -69900378 + RSINE1 SINE B4 2 157 -8 4 1269 247 240 17 193 chr3 89699422 89699541 -69900242 - B1_Mus1 SINE Alu -50 98 1 4 1269 250 240 65 65 chr3 89700850 89700957 -69898826 - PB1 SINE Alu 0 127 21 4 1269 457 254 0 26 chr3 89702488 89702601 -69897182 - PB1D7 SINE Alu 0 120 11 4 1269 257 259 181 94 chr3 89702601 89702637 -69897146 - ID_B1 SINE B4 0 224 63 4 1269 1652 234 129 25 chr3 89703475 89704035 -69895748 + Lx7 LINE L1 6877 7494 -202 4 1269 722 181 22 7 chr3 89704166 89704305 -69895478 + B1_Mur4 SINE Alu 1 141 -9 4 1269 198 0 0 0 chr3 89704311 89704333 -69895450 + (TAAAA)n Simple_repeat Simple_repeat 2 23 0 4 1269 1430 78 0 0 chr3 89704340 89704532 -69895251 + B2_Mm1t SINE B2 1 192 -1 4 1269 321 273 177 14 chr3 89704693 89704719 -69895064 + ID_B1 SINE B4 80 165 -127 4 1269 477 200 0 43 chr3 89704719 89704813 -69894970 + PB1D10 SINE Alu 21 110 -7 4 1269 321 273 177 14 chr3 89704813 89704834 -69894949 + ID_B1 SINE B4 166 244 -48 4 1269 306 297 0 0 chr3 89704965 89705093 -69894690 + (CA)n Simple_repeat Simple_repeat 1 128 0 4 1269 351 0 0 0 chr3 89706572 89706611 -69893172 + (GAGAA)n Simple_repeat Simple_repeat 2 40 0 4 1269 1179 104 0 0 chr3 89706613 89706786 -69892997 + (GGGGA)n Simple_repeat Simple_repeat 4 176 0 4 1269 518 0 0 16 chr3 89706788 89706851 -69892932 + (GAGAA)n Simple_repeat Simple_repeat 1 62 0 4 1269 311 254 93 62 chr3 89707509 89707689 -69892094 + B4A SINE B4 1 281 -11 4 1269 215 329 14 0 chr3 89707704 89707774 -69892009 + (CA)n Simple_repeat Simple_repeat 1 71 0 4 1269 867 217 3 0 chr3 89707931 89708301 -69891482 + (TG)n Simple_repeat Simple_repeat 1 370 0 4 1269 724 244 34 17 chr3 89708309 89708488 -69891295 - B3A SINE B2 -16 182 1 4 1269 255 303 124 0 chr3 89708506 89708595 -69891188 - PB1D7 SINE Alu -1 119 20 4 1269 247 177 0 0 chr3 89708644 89708706 -69891077 + L1Md_F2 LINE L1 6520 6581 -1 4 1269 550 212 26 0 chr3 89708809 89708922 -69890861 + PB1D10 SINE Alu 2 117 0 4 1269 666 172 52 0 chr3 89709275 89709409 -69890374 - B1_Mus2 SINE Alu 0 147 7 4 1269 223 272 10 7 chr3 89709668 89709755 -69890028 + ID_B1 SINE B4 6 93 -199 4 1269 502 242 0 0 chr3 89709818 89709913 -69889870 + B1F2 SINE Alu 11 105 -44 4 1269 209 344 0 0 chr3 89709923 89709984 -69889799 + MIR SINE MIR 126 186 -76 4 1269 275 266 218 71 chr3 89710593 89710832 -69888951 + B4A SINE B4 1 274 -18 4 1269 216 0 0 0 chr3 89710893 89710917 -69888866 + (CA)n Simple_repeat Simple_repeat 2 25 0 4 1269 191 324 14 0 chr3 89710945 89711019 -69888764 + MIR SINE MIR 58 132 -76 4 1269 224 59 29 0 chr3 89711047 89711081 -69888702 + (TTTTTG)n Simple_repeat Simple_repeat 3 37 0 4 1269 1170 41 7 0 chr3 89711082 89711227 -69888556 - B1_Mus2 SINE Alu 0 147 2 4 1269 380 282 25 25 chr3 89711384 89711504 -69888279 + L2 LINE L2 1958 2077 -1342 4 1269 711 69 147 0 chr3 89711519 89711635 -69888148 + B1_Mus2 SINE Alu 10 142 -5 4 1269 213 118 39 19 chr3 89711636 89711688 -69888095 + A-rich Low_complexity Low_complexity 5 57 0 4 1269 398 214 106 9 chr3 89711903 89712016 -69887767 + B1_Mur4 SINE Alu 27 150 0 4 1269 241 287 135 22 chr3 89712152 89712241 -69887542 - PB1D10 SINE Alu -18 99 1 4 1269 741 178 0 0 chr3 89712691 89712820 -69886963 + B1_Mur1 SINE Alu 15 143 -6 4 1269 518 210 84 0 chr3 89712826 89712945 -69886838 + B3 SINE B2 40 168 -48 4 1269 213 250 58 0 chr3 89713174 89713226 -69886557 - PB1D7 SINE Alu -26 94 40 4 1269 294 197 113 0 chr3 89713275 89713358 -69886425 - B1_Mur2 SINE Alu -43 106 1 4 1269 228 352 23 102 chr3 89713383 89713560 -69886223 - RSINE1 SINE B4 0 165 3 4 1269 727 109 67 8 chr3 89714291 89714411 -69885372 + B1_Mus2 SINE Alu 21 147 0 4 1269 722 129 48 0 chr3 89714849 89714973 -69884810 + B3 SINE B2 1 130 -86 4 1269 330 26 0 0 chr3 89715029 89715068 -69884715 + (TG)n Simple_repeat Simple_repeat 1 39 0 4 1269 307 278 33 11 chr3 89715778 89715869 -69883914 + ID_B1 SINE B4 75 167 -57 4 1269 397 224 61 10 chr3 89715796 89715885 -69883898 + PB1D7 SINE Alu 14 108 -12 4 1269 185 83 28 0 chr3 89715885 89715921 -69883862 + (TA)n Simple_repeat Simple_repeat 1 37 0 4 1269 321 346 19 0 chr3 89717469 89717573 -69882210 - MER5B DNA MER1_type -14 164 59 4 1269 636 98 39 0 chr3 89717989 89718091 -69881692 + B2_Mm2 SINE B2 2 107 -88 4 1269 189 195 0 0 chr3 89718139 89718180 -69881603 + A-rich Low_complexity Low_complexity 5 45 0 4 1269 223 244 0 0 chr3 89718480 89718525 -69881258 + PB1D9 SINE Alu 34 78 -42 4 1269 432 198 75 0 chr3 89718586 89718692 -69881091 + PB1D7 SINE Alu 5 118 -2 4 1269 268 288 12 24 chr3 89718939 89719021 -69880762 + MIR SINE MIR 37 117 -145 4 1269 4272 137 121 40 chr3 89719023 89719853 -69879930 - RMER19B LTR ERVK -5 897 1 4 1269 795 137 0 0 chr3 89719926 89720050 -69879733 + B1_Mur3 SINE Alu 3 126 -23 5 1269 256 324 86 0 chr3 89720222 89720327 -69879456 + PB1D10 SINE Alu 4 117 0 5 1269 234 0 0 0 chr3 89720418 89720444 -69879339 + (A)n Simple_repeat Simple_repeat 1 26 0 5 1269 191 32 65 0 chr3 89721148 89721179 -69878604 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 5 1269 182 262 0 0 chr3 89721231 89721273 -69878510 - MIRc SINE MIR -144 124 83 5 1269 2241 88 6 0 chr3 89721858 89722175 -69877608 + ORR1A2 LTR MaLR 1 319 -8 5 1269 318 266 26 35 chr3 89722239 89722352 -69877431 - PB1D10 SINE Alu -1 116 5 5 1269 269 125 42 0 chr3 89722895 89722943 -69876840 - B1_Mur1 SINE Alu 0 149 100 5 1269 365 207 24 0 chr3 89723001 89723083 -69876700 + B4A SINE B4 7 90 -202 5 1269 535 268 0 0 chr3 89723298 89723410 -69876373 - ID_B1 SINE B4 -7 217 106 5 1269 279 211 211 0 chr3 89723437 89723527 -69876256 + PB1D9 SINE Alu 1 109 -11 5 1269 4260 16 0 0 chr3 89723528 89724021 -69875762 - MT2_Mm LTR ERVL 0 493 1 5 1269 416 125 54 14 chr3 89724262 89724363 -69875420 + L1M5 LINE L1 5484 5589 -600 5 1269 1092 36 0 0 chr3 89724364 89724503 -69875280 - B1_Mm SINE Alu 0 147 9 5 1269 469 186 40 96 chr3 89724399 89724524 -69875259 - MT2B LTR ERVL -337 264 147 5 1269 1890 97 121 19 chr3 89724541 89724855 -69874928 - ORR1A1 LTR MaLR 0 346 1 5 1269 345 304 50 7 chr3 89724855 89724994 -69874789 + L1M4 LINE L1 5610 5754 -424 5 1269 315 0 0 0 chr3 89725067 89725102 -69874681 + (TTAA)n Simple_repeat Simple_repeat 2 36 0 5 1269 372 210 74 0 chr3 89725111 89725192 -69874591 - B3 SINE B2 -56 160 74 5 1269 232 164 17 52 chr3 89725277 89725335 -69874448 + ID_B1 SINE B4 96 151 -73 5 1269 1810 206 80 82 chr3 89725775 89725962 -69873821 - RMER6C LTR ERVK 0 690 512 5 1269 1202 34 0 0 chr3 89725962 89726108 -69873675 + B1_Mus2 SINE Alu 2 147 0 5 1269 1810 206 80 82 chr3 89726108 89726612 -69873171 - RMER6C LTR ERVK -179 511 1 5 1269 1062 231 250 2 chr3 89727104 89727252 -69872531 + RLTR19 LTR ERVK 1 184 -315 5 1269 267 31 0 0 chr3 89727252 89727284 -69872499 + (CAT)n Simple_repeat Simple_repeat 2 33 0 5 1269 1062 231 250 2 chr3 89727284 89727535 -69872248 + RLTR19 LTR ERVK 185 499 0 5 1269 311 23 47 0 chr3 89727638 89727681 -69872102 + (TTTTG)n Simple_repeat Simple_repeat 3 47 0 5 1269 666 224 22 0 chr3 89727681 89727815 -69871968 - B1_Mur1 SINE Alu -12 137 1 5 1269 882 228 10 36 chr3 89727815 89728011 -69871772 + B3 SINE B2 26 216 0 5 1269 901 249 126 55 chr3 89728639 89728808 -69870975 + MTEa LTR MaLR 4 179 -200 5 1269 966 100 0 0 chr3 89728808 89728948 -69870835 + (TTTCC)n Simple_repeat Simple_repeat 3 142 0 5 1269 901 249 126 55 chr3 89728948 89729058 -69870725 + MTEa LTR MaLR 180 312 -67 5 1269 1098 125 0 0 chr3 89729058 89729234 -69870549 + (GGAA)n Simple_repeat Simple_repeat 3 178 0 5 1269 261 0 0 0 chr3 89729234 89729263 -69870520 + (CAGG)n Simple_repeat Simple_repeat 1 29 0 5 1269 901 249 126 55 chr3 89729263 89729329 -69870454 + MTEa LTR MaLR 313 374 -5 5 1269 347 236 42 68 chr3 89729753 89729871 -69869912 - PB1D10 SINE Alu 0 117 3 5 1269 427 252 29 0 chr3 89729775 89729878 -69869905 - ID_B1 SINE B4 -42 182 77 5 1269 658 203 0 0 chr3 89729893 89730026 -69869757 - B1_Mus1 SINE Alu 0 148 16 5 1269 592 228 87 0 chr3 89730075 89730202 -69869581 + B1_Mur2 SINE Alu 9 146 -3 5 1269 729 148 0 0 chr3 89730231 89730346 -69869437 - B1_Mur4 SINE Alu -34 116 2 5 1269 686 305 5 0 chr3 89730437 89730627 -69869156 + B3A SINE B2 1 191 -7 5 1269 215 254 34 0 chr3 89730790 89730849 -69868934 - PB1 SINE Alu 0 127 67 5 1269 228 184 0 0 chr3 89730850 89730899 -69868884 + T-rich Low_complexity Low_complexity 1 49 0 5 1269 1092 88 0 0 chr3 89730899 89731047 -69868736 - B1_Mus1 SINE Alu 0 148 1 5 1269 653 246 8 0 chr3 89731118 89731248 -69868535 + RSINE1 SINE B4 16 146 -19 5 1269 2586 40 0 0 chr3 89731472 89731798 -69867985 + IAPEY2_LTR LTR ERVK 32 357 0 5 1269 294 73 0 0 chr3 89731889 89731930 -69867853 + (TG)n Simple_repeat Simple_repeat 2 42 0 5 1269 221 338 0 0 chr3 89731934 89732002 -69867781 - ID4_ SINE ID -15 68 1 5 1269 279 0 0 0 chr3 89732052 89732083 -69867700 + (TG)n Simple_repeat Simple_repeat 2 32 0 5 1269 1135 74 0 0 chr3 89732263 89732411 -69867372 + B1_Mus1 SINE Alu 1 148 0 5 1269 189 107 0 0 chr3 89732413 89732441 -69867342 + (GAAA)n Simple_repeat Simple_repeat 3 30 0 5 1269 739 162 27 40 chr3 89732490 89732638 -69867145 + B1_Mus1 SINE Alu 3 148 0 5 1269 565 286 93 37 chr3 89732657 89732759 -69867024 + MER44D DNA MER2_type 5 104 -601 5 1269 371 180 286 9 chr3 89732759 89732871 -69866912 - B1_Mur4 SINE Alu -6 144 2 5 1269 565 286 93 37 chr3 89732871 89732982 -69866801 + MER44D DNA MER2_type 105 230 -475 5 1269 403 238 0 0 chr3 89733157 89733241 -69866542 + RSINE1 SINE B4 41 124 -41 5 1269 1060 60 83 12 chr3 89733290 89733458 -69866325 + B2_Mm2 SINE B2 15 194 -1 5 1269 1127 68 7 0 chr3 89733472 89733618 -69866165 + B1_Mus1 SINE Alu 1 147 -1 5 1269 431 130 13 0 chr3 89733623 89733700 -69866083 + (GAAA)n Simple_repeat Simple_repeat 3 80 0 5 1269 1032 156 0 0 chr3 89733700 89733880 -69865903 + GA-rich Low_complexity Low_complexity 1 180 0 5 1269 495 0 0 0 chr3 89733882 89733937 -69865846 + (GAAA)n Simple_repeat Simple_repeat 1 55 0 5 1269 515 184 162 0 chr3 89733944 89734106 -69865677 + MTD LTR MaLR 217 415 -6 5 1269 241 211 0 0 chr3 89734093 89734150 -69865633 + MER44D DNA MER2_type 558 614 -91 5 1269 717 318 139 5 chr3 89734660 89735071 -69864712 + MLT2B4 LTR ERVL 20 485 -71 5 1269 498 75 0 0 chr3 89735105 89735172 -69864611 + (TG)n Simple_repeat Simple_repeat 2 68 0 5 1269 207 0 0 0 chr3 89735200 89735223 -69864560 + (CAGG)n Simple_repeat Simple_repeat 2 24 0 5 1269 262 244 51 13 chr3 89735502 89735581 -69864202 + ID2 SINE ID 2 83 0 5 1269 551 333 34 10 chr3 89735619 89735828 -69863955 + Tigger7 DNA MER2_type 6 219 -2272 5 1269 1168 35 7 0 chr3 89735985 89736127 -69863656 + B1_Mm SINE Alu 5 147 0 5 1269 605 188 7 66 chr3 89736158 89736295 -69863488 - MT2A LTR ERVL -401 132 4 5 1269 2686 65 8 0 chr3 89736298 89736652 -69863131 + L1Md_F2 LINE L1 6120 6476 -106 5 1269 204 125 0 0 chr3 89736652 89736684 -69863099 + (A)n Simple_repeat Simple_repeat 1 32 0 5 1269 1150 127 63 0 chr3 89736815 89737004 -69862779 - ORR1B1 LTR MaLR 0 394 194 5 1269 1012 174 25 15 chr3 89736992 89737190 -69862593 + MTC LTR MaLR 222 421 0 5 1269 1573 161 40 95 chr3 89737796 89738060 -69861723 + ORR1C2 LTR MaLR 2 252 -132 5 1269 2129 117 3 44 chr3 89738060 89738401 -69861382 + ORR1A2 LTR MaLR 1 327 0 5 1269 1573 161 40 95 chr3 89738401 89738485 -69861298 + ORR1C2 LTR MaLR 253 331 -53 5 1269 459 202 62 27 chr3 89738484 89738596 -69861187 - B1F2 SINE Alu -25 124 9 5 1269 1857 242 64 29 chr3 89739411 89739930 -69859853 + Lx6 LINE L1 6919 7455 -5 5 1269 1043 36 43 0 chr3 89740028 89740167 -69859616 + B1_Mus1 SINE Alu 2 146 -2 5 1269 248 53 26 0 chr3 89740167 89740205 -69859578 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 5 1269 319 242 103 88 chr3 89740396 89740532 -69859251 - ID_B1 SINE B4 0 224 87 5 1269 678 217 14 14 chr3 89741155 89741295 -69858488 - B1F SINE Alu -9 140 1 5 1269 1149 218 45 26 chr3 89741306 89741575 -69858208 - MTD LTR MaLR -145 274 1 5 1269 447 215 40 20 chr3 89742166 89742299 -69857484 + PB1D9 SINE Alu 14 149 0 5 1269 258 311 61 69 chr3 89742853 89742984 -69856799 + B1F SINE Alu 20 149 0 5 1269 389 271 165 0 chr3 89743013 89743183 -69856600 + ID_B1 SINE B4 3 200 -24 5 1269 223 85 43 0 chr3 89743578 89743625 -69856158 + (TA)n Simple_repeat Simple_repeat 2 50 0 5 1269 318 240 45 45 chr3 89746024 89746203 -69853580 + (CAG)n Simple_repeat Simple_repeat 1 179 0 5 1269 217 250 52 35 chr3 89746461 89746519 -69853264 - ID4 SINE ID -19 64 6 5 1269 534 31 0 0 chr3 89746536 89746600 -69853183 + (CA)n Simple_repeat Simple_repeat 2 65 0 5 1269 546 191 78 0 chr3 89746603 89746718 -69853065 - ID_B1 SINE B4 -7 217 94 5 1269 676 174 58 7 chr3 89748260 89748399 -69851384 - B1F SINE Alu -1 148 3 5 1269 330 286 243 19 chr3 89748636 89748850 -69850933 - B4 SINE B4 -2 290 29 5 1269 338 330 32 0 chr3 89750992 89751086 -69848697 - PB1D10 SINE Alu -2 115 19 5 1269 532 312 45 0 chr3 89751222 89751376 -69848407 + RSINE1 SINE B4 3 163 -2 5 1269 218 250 0 0 chr3 89751387 89751431 -69848352 + (CA)n Simple_repeat Simple_repeat 2 45 0 5 1269 868 161 200 0 chr3 89751454 89751634 -69848149 + B3 SINE B2 1 216 0 5 1269 23 0 0 0 chr3 89751634 89751657 -69848126 + AT_rich Low_complexity Low_complexity 1 23 0 5 1269 475 224 112 0 chr3 89752593 89752718 -69847065 - B1F1 SINE Alu -5 144 6 5 1269 1089 63 7 14 chr3 89754680 89754825 -69844958 + B1_Mm SINE Alu 1 144 -3 5 1269 369 252 0 22 chr3 89755133 89755251 -69844532 - B1F SINE Alu -4 116 4 5 1269 346 273 29 39 chr3 89755613 89755716 -69844067 + B1F1 SINE Alu 7 108 -41 5 1269 180 0 0 0 chr3 89756065 89756085 -69843698 + (TCC)n Simple_repeat Simple_repeat 1 20 0 5 1269 304 337 0 0 chr3 89757269 89757352 -69842431 - B1F SINE Alu -66 83 1 5 1269 297 172 0 49 chr3 89757354 89757415 -69842368 + PB1D10 SINE Alu 54 111 -6 5 1269 672 206 31 2 chr3 89758587 89758722 -69841061 + B3A SINE B2 2 137 -61 5 1269 1212 106 0 0 chr3 89758722 89758977 -69840806 + (CA)n Simple_repeat Simple_repeat 1 255 0 6 1269 438 263 76 96 chr3 89758977 89759022 -69840761 + B2_Mm2 SINE B2 125 181 -14 5 1269 1226 27 0 0 chr3 89759022 89759168 -69840615 + B1_Mus2 SINE Alu 2 147 0 6 1269 438 263 76 96 chr3 89759168 89759182 -69840601 + B2_Mm2 SINE B2 182 195 0 5 1269 599 248 35 0 chr3 89759185 89759326 -69840457 + B1_Mur1 SINE Alu 3 148 -1 6 1269 417 328 30 0 chr3 89759423 89759557 -69840226 + ID_B1 SINE B4 35 172 -52 6 1269 234 307 26 13 chr3 89759685 89759761 -69840022 - B4A SINE B4 0 292 216 6 1269 390 287 74 0 chr3 89759907 89760015 -69839768 - RSINE1 SINE B4 -48 117 2 6 1269 674 261 105 18 chr3 89760015 89760224 -69839559 - B4A SINE B4 -64 228 1 6 1269 292 280 92 18 chr3 89760388 89760497 -69839286 + PB1D9 SINE Alu 3 119 -1 6 1269 518 283 14 35 chr3 89761424 89761567 -69838216 - B1_Mur1 SINE Alu -8 141 2 6 1269 28 79 0 0 chr3 89767087 89767150 -69832633 + GC_rich Low_complexity Low_complexity 1 63 0 6 1269 22 0 0 0 chr3 89767204 89767226 -69832557 + GC_rich Low_complexity Low_complexity 1 22 0 6 1269 256 217 0 144 chr3 89767900 89767997 -69831786 - PB1D9 SINE Alu -2 118 36 6 1269 889 64 19 119 chr3 89768040 89768200 -69831583 + B1_Mm SINE Alu 1 144 -3 6 1269 213 304 0 0 chr3 89769034 89769090 -69830693 - MIR SINE MIR -67 141 86 6 1269 385 132 286 0 chr3 89769224 89769315 -69830468 + PB1D9 SINE Alu 2 118 -2 6 1269 774 155 144 0 chr3 89770302 89770476 -69829307 + B3 SINE B2 5 203 -13 6 1269 866 98 52 183 chr3 89770501 89770714 -69829069 + B2_Mm2 SINE B2 6 190 -5 6 1269 1165 29 0 0 chr3 89770775 89770913 -69828870 + B1_Mus2 SINE Alu 1 138 -9 6 1269 525 99 21 21 chr3 89771046 89771139 -69828644 + B2_Mm1t SINE B2 86 178 -15 6 1269 431 107 298 74 chr3 89771168 89771289 -69828494 + B2_Mm2 SINE B2 47 194 -1 6 1269 1117 104 0 6 chr3 89771921 89772085 -69827698 - U1 snRNA snRNA -2 163 1 6 1269 1177 54 0 0 chr3 89772116 89772263 -69827520 - B1_Mm SINE Alu 0 147 1 6 1269 580 231 14 63 chr3 89773382 89773525 -69826258 + B1_Mur2 SINE Alu 4 139 -10 6 1269 237 65 0 0 chr3 89773525 89773556 -69826227 + (TAA)n Simple_repeat Simple_repeat 2 32 0 6 1269 23 33 0 0 chr3 89773562 89773592 -69826191 + AT_rich Low_complexity Low_complexity 1 30 0 6 1269 262 313 132 0 chr3 89773600 89773683 -69826100 + B1_Mur3 SINE Alu 1 94 -55 6 1269 329 126 10 0 chr3 89773684 89773751 -69826032 - B1_Mur4 SINE Alu -11 139 41 6 1269 256 289 12 24 chr3 89774086 89774171 -69825612 - PB1D10 SINE Alu -11 106 23 6 1269 1257 106 16 0 chr3 89774175 89774363 -69825420 + B2_Mm2 SINE B2 2 192 -3 6 1269 390 395 40 43 chr3 89774398 89774591 -69825192 + LTR16A LTR ERVL 29 220 -231 6 1269 356 0 0 22 chr3 89774591 89774636 -69825147 + (TTG)n Simple_repeat Simple_repeat 2 45 0 6 1269 390 395 40 43 chr3 89774636 89774765 -69825018 + LTR16A LTR ERVL 221 349 -102 6 1269 207 0 0 0 chr3 89774840 89774863 -69824920 + (A)n Simple_repeat Simple_repeat 1 23 0 6 1269 952 281 7 76 chr3 89775272 89775316 -69824467 - MTE2b LTR MaLR -58 321 292 6 1269 1478 21 38 0 chr3 89775316 89775502 -69824281 + B2_Mm1a SINE B2 1 193 0 6 1269 952 281 7 76 chr3 89775502 89775746 -69824037 - MTE2b LTR MaLR -88 291 53 6 1269 266 267 147 0 chr3 89775747 89775822 -69823961 - MTE2b LTR MaLR -292 87 2 6 1269 701 167 71 14 chr3 89775964 89776104 -69823679 - B1_Mus1 SINE Alu 0 148 1 6 1269 563 255 35 21 chr3 89776132 89776276 -69823507 + B1_Mur1 SINE Alu 3 148 -1 6 1269 1074 43 7 14 chr3 89776818 89776961 -69822822 + B1_Mus1 SINE Alu 2 143 -5 6 1269 1189 211 189 29 chr3 89777153 89777456 -69822327 + MT2A LTR ERVL 92 459 -74 6 1269 510 17 0 0 chr3 89777456 89777515 -69822268 + (TC)n Simple_repeat Simple_repeat 2 60 0 6 1269 1394 77 39 0 chr3 89777518 89777699 -69822084 - B2_Mm2 SINE B2 -5 190 3 6 1269 1127 211 189 29 chr3 89777699 89777772 -69822011 + MT2A LTR ERVL 460 530 -3 6 1269 352 248 44 44 chr3 89777814 89777949 -69821834 - MER52-int LTR ERV1 -5 7086 6952 6 1269 192 40 0 0 chr3 89778023 89778048 -69821735 + (CAGA)n Simple_repeat Simple_repeat 4 28 0 6 1269 423 98 0 0 chr3 89778366 89778427 -69821356 + (TCC)n Simple_repeat Simple_repeat 2 62 0 6 1269 1359 67 0 0 chr3 89778427 89778606 -69821177 + (TTC)n Simple_repeat Simple_repeat 2 180 0 6 1269 1117 92 0 0 chr3 89778611 89778752 -69821031 - B1_Mus1 SINE Alu -6 142 2 6 1269 249 204 75 123 chr3 89778897 89779003 -69820780 - RLTR26 LTR ERVK -225 417 317 6 1269 435 308 101 34 chr3 89779552 89779700 -69820083 + RSINE1 SINE B4 6 163 -2 6 1269 307 167 0 0 chr3 89779733 89779787 -69819996 + B3A SINE B2 2 55 -143 6 1269 319 136 33 33 chr3 89779782 89779843 -69819940 - B1F2 SINE Alu -48 101 41 6 1269 215 232 0 18 chr3 89779958 89780015 -69819768 - B1_Mur4 SINE Alu -94 56 1 6 1269 1327 80 11 0 chr3 89780057 89780232 -69819551 + B2_Mm1t SINE B2 2 178 -15 6 1269 435 38 0 0 chr3 89780232 89780285 -69819498 + (GA)n Simple_repeat Simple_repeat 1 53 0 6 1269 2871 172 52 12 chr3 89780290 89780885 -69818898 + ORR1C1-int LTR MaLR 890 1508 -1 6 1269 441 169 493 0 chr3 89780886 89781114 -69818669 + ORR1C1 LTR MaLR 1 370 -14 6 1269 1206 61 0 0 chr3 89781182 89781329 -69818454 - B1_Mm SINE Alu 0 147 1 6 1269 2560 131 6 99 chr3 89781380 89781501 -69818282 + RLTR23 LTR ERV1 1 120 -310 6 1269 1308 106 11 0 chr3 89781501 89781680 -69818103 + B2_Mm1t SINE B2 1 181 -12 6 1269 819 57 0 0 chr3 89781680 89781785 -69817998 + (GAAAA)n Simple_repeat Simple_repeat 2 106 0 6 1269 2560 131 6 99 chr3 89781785 89782136 -69817647 + RLTR23 LTR ERV1 121 429 -1 6 1269 24 67 0 0 chr3 89782230 89782275 -69817508 + AT_rich Low_complexity Low_complexity 1 45 0 6 1269 327 246 287 0 chr3 89782318 89782440 -69817343 - B3A SINE B2 -41 157 1 6 1269 1444 48 26 21 chr3 89782567 89782598 -69817185 - B2_Mm1a SINE B2 0 193 161 6 1269 234 0 0 0 chr3 89782598 89782624 -69817159 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 6 1269 1444 48 26 21 chr3 89782624 89782784 -69816999 - B2_Mm1a SINE B2 -33 160 1 6 1269 421 322 91 4 chr3 89783217 89783448 -69816335 - MER52-int LTR ERV1 -1193 5898 5648 6 1269 1190 61 0 7 chr3 89783510 89783659 -69816124 + B1_Mus1 SINE Alu 1 148 0 6 158 3233 136 19 58 chr3 89784102 89784686 -69815097 - RLTR31_Mm LTR ERVK 0 561 1 6 1270 628 277 16 83 chr3 89784792 89784985 -69814798 - MER52-int LTR ERV1 -3345 3746 3567 6 1270 1423 70 27 0 chr3 89785011 89785196 -69814587 + B2_Mm1a SINE B2 1 190 -3 6 1270 632 263 96 5 chr3 89785231 89785418 -69814365 - B3 SINE B2 -11 205 2 6 1270 332 127 14 14 chr3 89785485 89785557 -69814226 - B2_Mm1t SINE B2 -1 192 121 6 1270 461 98 0 4 chr3 89785534 89785618 -69814165 - B1_Mus1 SINE Alu -68 82 1 6 1270 1459 45 62 0 chr3 89785669 89785846 -69813937 + B2_Mm1a SINE B2 1 188 -5 6 1270 1288 82 27 21 chr3 89786242 89786428 -69813355 - B2_Mm1t SINE B2 -6 187 1 6 1270 213 39 0 0 chr3 89786429 89786455 -69813328 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 6 1270 1225 113 11 22 chr3 89786457 89786638 -69813145 - B2_Mm2 SINE B2 -15 180 2 6 1270 1234 34 0 7 chr3 89787239 89787386 -69812397 + B1_Mm SINE Alu 2 147 0 6 1270 294 98 0 0 chr3 89787386 89787437 -69812346 + (A)n Simple_repeat Simple_repeat 1 51 0 6 1270 227 214 17 35 chr3 89787784 89787842 -69811941 + RLTR23 LTR ERV1 332 388 -42 6 1270 1081 125 21 0 chr3 89787942 89788124 -69811659 + B2_Mm1a SINE B2 1 190 -3 6 1270 1123 30 0 7 chr3 89788202 89788337 -69811446 + B1_Mm SINE Alu 1 134 -13 6 1270 238 26 25 25 chr3 89788337 89788377 -69811406 + (CAAAA)n Simple_repeat Simple_repeat 1 40 0 6 1270 479 191 224 9 chr3 89788388 89788504 -69811279 + B1_Mur3 SINE Alu 2 142 -7 6 1270 593 220 197 28 chr3 89788545 89788723 -69811060 - B3 SINE B2 -7 209 2 6 1270 207 0 0 0 chr3 89788740 89788763 -69811020 + (TTTTC)n Simple_repeat Simple_repeat 2 24 0 6 1270 258 32 0 0 chr3 89788771 89788802 -69810981 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 6 1270 949 117 142 7 chr3 89788802 89788957 -69810826 - B2_Mm2 SINE B2 -18 177 2 6 1270 1012 202 31 0 chr3 89788988 89789181 -69810602 - B3 SINE B2 -17 199 1 6 1270 957 69 8 0 chr3 89789387 89789518 -69810265 - B2_Mm2 SINE B2 -62 133 2 6 1270 850 243 50 0 chr3 89789707 89789909 -69809874 + B3 SINE B2 5 216 0 6 1270 1345 75 0 105 chr3 89789931 89790140 -69809643 + B2_Mm2 SINE B2 2 188 -7 6 1270 309 258 0 0 chr3 89790589 89790655 -69809128 - ID SINE ID -151 73 8 6 1270 704 150 0 8 chr3 89790666 89790794 -69808989 + CT-rich Low_complexity Low_complexity 5 131 0 6 1270 887 92 0 8 chr3 89790797 89790929 -69808854 + (TTTC)n Simple_repeat Simple_repeat 3 133 0 6 1270 514 260 15 8 chr3 89790933 89791065 -69808718 - B1F SINE Alu -16 133 1 6 1270 1092 58 22 0 chr3 89791471 89791608 -69808175 - B1_Mur4 SINE Alu -8 142 3 6 1270 279 0 0 0 chr3 89791633 89791664 -69808119 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 6 1270 1002 47 45 30 chr3 89791665 89791798 -69807985 - B1_Mus1 SINE Alu -12 136 2 6 1270 300 27 0 0 chr3 89791958 89791995 -69807788 + (TG)n Simple_repeat Simple_repeat 2 38 0 6 1270 1617 179 40 3 chr3 89792392 89792690 -69807093 - RLTR27 LTR ERVK 0 309 1 6 1270 213 39 0 0 chr3 89792757 89792783 -69807000 + (CAAAG)n Simple_repeat Simple_repeat 2 27 0 6 1270 235 254 14 82 chr3 89792807 89792880 -69806903 - ID4_ SINE ID 0 83 16 6 1270 212 0 0 35 chr3 89792999 89793028 -69806755 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 6 1270 816 33 74 8 chr3 89793028 89793141 -69806642 - B1_Mus2 SINE Alu -11 136 15 6 1270 1767 239 28 41 chr3 89793302 89793738 -69806045 + Lx6 LINE L1 6991 7420 -40 6 1270 437 257 62 0 chr3 89793792 89793905 -69805878 + B1_Mur1 SINE Alu 19 138 -11 7 1270 315 0 0 0 chr3 89793905 89793940 -69805843 + (TTTA)n Simple_repeat Simple_repeat 3 37 0 7 1270 279 220 107 65 chr3 89793944 89794008 -69805775 + B1F SINE Alu 23 135 -14 7 1270 342 0 0 0 chr3 89794008 89794046 -69805737 + (TTTA)n Simple_repeat Simple_repeat 3 40 0 7 1270 287 214 105 97 chr3 89794046 89794116 -69805667 + B1F1 SINE Alu 65 137 -12 7 1270 318 50 0 0 chr3 89794116 89794156 -69805627 + (TTTA)n Simple_repeat Simple_repeat 3 42 0 7 1270 1250 44 0 0 chr3 89794156 89794316 -69805467 - B2_Mm1a SINE B2 -33 160 1 7 1270 599 92 24 4 chr3 89794343 89794450 -69805333 - B1_Mus1 SINE Alu 0 117 2 7 1270 374 200 0 86 chr3 89794368 89794461 -69805322 - MT2B LTR ERVL -362 239 155 7 1270 614 305 24 24 chr3 89794605 89794813 -69804970 - B3 SINE B2 -7 209 2 7 1270 374 289 48 0 chr3 89794925 89795029 -69804754 - B1F2 SINE Alu -32 117 9 7 1270 385 261 26 98 chr3 89795054 89795133 -69804650 - B1F SINE Alu 0 149 85 7 1270 1641 27 5 0 chr3 89795133 89795321 -69804462 - B2_Mm1t SINE B2 -4 189 1 7 1270 385 261 26 98 chr3 89795321 89795394 -69804389 - B1F SINE Alu -65 84 8 7 1270 799 271 14 54 chr3 89795545 89795767 -69804016 + B3 SINE B2 1 213 -3 7 1270 1494 78 5 0 chr3 89795802 89795993 -69803790 + B2_Mm1t SINE B2 1 192 -1 7 1270 1105 58 29 0 chr3 89796015 89796154 -69803629 + B1_Mus2 SINE Alu 5 147 0 7 1270 1004 132 84 0 chr3 89796173 89796340 -69803443 - B2_Mm2 SINE B2 -14 181 1 7 1270 321 153 56 0 chr3 89796358 89796430 -69803353 - B1_Mur4 SINE Alu -1 149 74 7 1270 311 301 107 0 chr3 89796631 89796734 -69803049 - PB1D10 SINE Alu -1 116 3 7 1270 646 159 8 34 chr3 89796762 89796879 -69802904 + B3 SINE B2 2 115 -101 7 1270 390 159 0 0 chr3 89796880 89796949 -69802834 + (TA)n Simple_repeat Simple_repeat 2 70 0 7 1270 261 182 0 0 chr3 89796957 89797001 -69802782 - B1_Mus1 SINE Alu -98 50 7 7 1270 582 220 23 0 chr3 89797056 89797193 -69802590 + CT-rich Low_complexity Low_complexity 39 178 0 7 1270 1147 48 0 52 chr3 89797193 89797348 -69802435 - B1_Mus1 SINE Alu 0 148 2 7 1270 582 220 23 0 chr3 89797348 89797383 -69802400 + polypyrimidine Low_complexity Low_complexity 3 38 0 7 1270 798 82 2 7 chr3 89797383 89797508 -69802275 - B1_Mus1 SINE Alu 0 120 1 7 1270 899 99 245 0 chr3 89797715 89797866 -69801917 + B2_Mm2 SINE B2 2 189 -6 7 1270 459 167 176 0 chr3 89798041 89798149 -69801634 - B1_Mus1 SINE Alu -15 133 7 7 1270 282 200 78 26 chr3 89798221 89798298 -69801485 + B1_Mur2 SINE Alu 60 140 -9 7 1270 44 63 0 0 chr3 89798336 89798415 -69801368 + AT_rich Low_complexity Low_complexity 1 79 0 7 1270 404 252 150 0 chr3 89798419 89798546 -69801237 + B1_Mur1 SINE Alu 4 149 0 7 1270 1401 81 38 0 chr3 89798642 89798828 -69800955 + B2_Mm2 SINE B2 2 194 -1 7 1270 1197 106 62 0 chr3 89798834 89799013 -69800770 + B2_Mm1t SINE B2 3 192 -1 7 1270 507 244 55 8 chr3 89799141 89799269 -69800514 + RSINE1 SINE B4 3 136 -29 7 1270 1223 54 0 0 chr3 89800269 89800416 -69799367 - B1_Mm SINE Alu 0 147 1 7 1270 1219 41 0 7 chr3 89800596 89800743 -69799040 + B1_Mus2 SINE Alu 1 146 -1 7 1270 509 125 69 50 chr3 89800801 89800902 -69798881 + B1F2 SINE Alu 46 148 -1 7 1270 764 216 29 12 chr3 89800935 89801108 -69798675 + B3 SINE B2 41 216 0 7 1270 225 94 0 0 chr3 89801859 89801891 -69797892 + (CAT)n Simple_repeat Simple_repeat 3 34 0 7 1270 517 218 67 8 chr3 89803052 89803186 -69796597 - B1_Mus2 SINE Alu -5 142 1 7 1270 309 167 64 43 chr3 89803298 89803392 -69796391 + PB1D9 SINE Alu 24 119 -1 7 1270 717 199 35 7 chr3 89803620 89803762 -69796021 + B1_Mur1 SINE Alu 2 147 -2 7 1270 231 36 0 0 chr3 89804238 89804266 -69795517 + (TA)n Simple_repeat Simple_repeat 1 28 0 7 1270 468 35 0 0 chr3 89804363 89804421 -69795362 + (TG)n Simple_repeat Simple_repeat 1 58 0 7 1270 185 178 0 22 chr3 89806147 89806193 -69793590 + GA-rich Low_complexity Low_complexity 4 48 0 7 1270 267 259 157 0 chr3 89806512 89806620 -69793163 + MIRb SINE MIR 64 188 -80 7 1270 693 223 50 14 chr3 89806666 89806807 -69792976 + B1_Mur1 SINE Alu 2 147 -2 7 1270 308 310 34 25 chr3 89811195 89811314 -69788469 + PB1D7 SINE Alu 1 120 0 7 1270 717 183 49 0 chr3 89811324 89811466 -69788317 + B1_Mur2 SINE Alu 1 149 0 7 1270 25 0 0 0 chr3 89811478 89811503 -69788280 + AT_rich Low_complexity Low_complexity 1 25 0 7 1270 569 221 274 36 chr3 89812435 89812727 -69787056 + ORR1E LTR MaLR 10 370 0 7 1270 723 197 41 21 chr3 89813446 89813591 -69786192 + B1_Mus1 SINE Alu 1 148 0 7 1270 236 328 15 0 chr3 89813675 89813742 -69786041 + tRNA-Ala-GCY_ tRNA tRNA 1 68 -7 7 1270 1451 44 38 0 chr3 89813795 89813978 -69785805 + B2_Mm1a SINE B2 1 190 -3 7 1270 1194 85 79 6 chr3 89813988 89814166 -69785617 + B2_Mm2 SINE B2 1 191 -4 7 1270 419 204 21 31 chr3 89814956 89815052 -69784731 + B1_Mur1 SINE Alu 40 134 -15 7 1270 270 146 0 0 chr3 89815055 89815096 -69784687 - PB1D9 SINE Alu -79 41 1 7 1270 227 200 0 22 chr3 89815058 89815104 -69784679 - B4 SINE B4 -169 123 79 7 1270 228 286 138 37 chr3 89815113 89815222 -69784561 + PB1D7 SINE Alu 1 120 0 7 1270 220 302 0 0 chr3 89815264 89815327 -69784456 + B1F SINE Alu 68 130 -19 7 1270 585 218 20 34 chr3 89815390 89815537 -69784246 + B1_Mur3 SINE Alu 3 147 -2 7 1270 192 97 0 0 chr3 89815726 89815757 -69784026 + (A)n Simple_repeat Simple_repeat 1 31 0 7 1270 309 196 89 89 chr3 89815807 89815908 -69783875 + PB1 SINE Alu 24 124 -3 7 1270 260 349 0 0 chr3 89815908 89815971 -69783812 + ID4_ SINE ID 3 65 -18 7 1270 455 295 27 54 chr3 89816207 89816354 -69783429 - B1F SINE Alu 0 149 7 7 1270 492 323 7 22 chr3 89816229 89816365 -69783418 - ID_B1 SINE B4 -12 212 79 7 1270 593 145 7 144 chr3 89816392 89816545 -69783238 + B1_Mur4 SINE Alu 9 140 -10 7 1270 799 230 88 10 chr3 89817053 89817246 -69782537 + B3 SINE B2 1 208 -8 7 1270 494 298 69 20 chr3 89817272 89817474 -69782309 + B3 SINE B2 1 212 -4 7 1270 1027 88 7 0 chr3 89817714 89817850 -69781933 + B1_Mus1 SINE Alu 2 138 -10 7 1270 513 242 53 8 chr3 89817931 89818064 -69781719 - B1_Mur1 SINE Alu 0 149 11 7 1270 555 208 0 55 chr3 89818115 89818242 -69781541 - B1_Mur2 SINE Alu -28 121 2 7 1270 23 33 0 0 chr3 89818253 89818283 -69781500 + AT_rich Low_complexity Low_complexity 1 30 0 7 1270 815 206 58 12 chr3 89818575 89818747 -69781036 + B3 SINE B2 27 206 -10 7 1270 214 266 109 0 chr3 89819975 89820039 -69779744 - ID4_ SINE ID -1 82 12 7 1270 184 30 61 0 chr3 89820050 89820083 -69779700 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 7 1270 441 146 206 10 chr3 89820083 89820173 -69779610 - B1_Mur4 SINE Alu -11 139 30 7 1270 336 249 32 60 chr3 89820388 89820507 -69779276 + PB1D10 SINE Alu 1 143 -6 7 1270 337 318 64 0 chr3 89821419 89821529 -69778254 + RSINE1 SINE B4 47 163 -2 7 1270 270 0 0 0 chr3 89821534 89821564 -69778219 + (A)n Simple_repeat Simple_repeat 1 30 0 7 1270 290 357 18 0 chr3 89821609 89821721 -69778062 + PB1D7 SINE Alu 7 120 0 7 1270 482 195 278 19 chr3 89821724 89821886 -69777897 + B3 SINE B2 3 206 -10 7 1270 570 187 264 6 chr3 89821913 89822080 -69777703 + B3 SINE B2 1 210 -6 7 1270 260 385 0 0 chr3 89822130 89822144 -69777639 + B4A SINE B4 72 85 -207 7 1270 549 248 0 18 chr3 89822144 89822270 -69777513 + B1_Mur2 SINE Alu 1 119 -1 7 1270 624 256 26 52 chr3 89822489 89822683 -69777100 + B3A SINE B2 5 193 -5 7 1270 628 150 126 0 chr3 89823508 89823635 -69776148 + B1_Mus1 SINE Alu 6 148 0 7 1270 225 260 0 0 chr3 89823655 89823705 -69776078 - B3 SINE B2 -9 207 158 7 1270 24 0 0 0 chr3 89823981 89824005 -69775778 + AT_rich Low_complexity Low_complexity 1 24 0 7 1270 201 238 0 31 chr3 89824141 89824206 -69775577 + T-rich Low_complexity Low_complexity 2 64 0 7 1270 849 292 45 19 chr3 89824290 89824559 -69775224 + B4A SINE B4 4 279 -13 7 1270 458 152 141 0 chr3 89825588 89825680 -69774103 + MTD LTR MaLR 18 122 -299 7 1270 482 274 197 17 chr3 89825693 89825871 -69773912 - B3 SINE B2 -6 210 1 7 1270 238 216 83 102 chr3 89825945 89826053 -69773730 - B1_Mur2 SINE Alu 0 149 44 7 1270 658 227 201 0 chr3 89826109 89826303 -69773480 + MTD LTR MaLR 187 419 0 7 1270 803 92 45 96 chr3 89826429 89826585 -69773198 + B1_Mus1 SINE Alu 1 148 0 7 1270 579 81 168 8 chr3 89826682 89826807 -69772976 - RMER17B LTR ERVK -498 460 316 7 1270 456 313 71 26 chr3 89826889 89827043 -69772740 + B4 SINE B4 2 162 -130 7 1270 333 199 43 28 chr3 89827087 89827177 -69772606 + B1_Mus2 SINE Alu 13 116 -33 7 1270 550 161 45 31 chr3 89827898 89828020 -69771763 + PB1D9 SINE Alu 4 149 0 7 1270 309 208 24 61 chr3 89828022 89828104 -69771679 + ID_B1 SINE B4 146 224 0 7 1270 243 244 89 13 chr3 89828157 89828236 -69771547 + Lx8 LINE L1 6689 6773 -700 7 1270 239 0 0 31 chr3 89828316 89828348 -69771435 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 8 1270 1294 52 6 0 chr3 89828385 89828557 -69771226 + B2_Mm2 SINE B2 1 173 -22 8 1270 1191 187 75 0 chr3 89828557 89828825 -69770958 - RMER4B LTR ERVK -249 336 49 8 1270 372 259 53 12 chr3 89829415 89829528 -69770255 - PB1D10 SINE Alu -3 114 3 8 1270 478 236 75 0 chr3 89829532 89829638 -69770145 - PB1D9 SINE Alu -5 115 2 8 1270 1003 121 70 65 chr3 89830302 89830487 -69769296 + B2_Mm2 SINE B2 2 187 -8 8 1270 21 0 0 0 chr3 89831471 89831492 -69768291 + AT_rich Low_complexity Low_complexity 1 21 0 8 1270 329 272 12 12 chr3 89831858 89831940 -69767843 - ID4 SINE ID 0 83 2 8 1270 309 89 0 0 chr3 89833143 89833188 -69766595 + (TA)n Simple_repeat Simple_repeat 2 46 0 8 1270 457 286 117 65 chr3 89833284 89833531 -69766252 - B4A SINE B4 0 292 33 8 1270 441 281 96 7 chr3 89833771 89833907 -69765876 + B1F2 SINE Alu 2 149 0 8 1270 498 298 84 11 chr3 89834088 89834278 -69765505 + B4A SINE B4 3 206 -86 8 1270 1280 84 16 5 chr3 89834491 89834683 -69765100 + B2_Mm2 SINE B2 2 195 0 8 1270 550 200 150 0 chr3 89835699 89835819 -69763964 + B1_Mur4 SINE Alu 1 138 -12 8 1270 673 246 137 0 chr3 89836216 89836391 -69763392 + B3 SINE B2 4 202 -14 8 1270 302 246 16 0 chr3 89836580 89836641 -69763142 + ID4_ SINE ID 22 83 0 8 1270 400 181 18 111 chr3 89836943 89837055 -69762728 + B1_Mm SINE Alu 9 139 -8 8 1270 183 327 0 19 chr3 89837245 89837298 -69762485 + MIRb SINE MIR 20 71 -197 8 1270 314 300 113 23 chr3 89837361 89837494 -69762289 + ID_B1 SINE B4 79 223 -1 8 1270 284 295 64 0 chr3 89837534 89837587 -69762196 + B1F1 SINE Alu 2 54 -95 8 1270 228 35 0 0 chr3 89837587 89837616 -69762167 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 8 1270 284 295 64 0 chr3 89837616 89837640 -69762143 + B1F1 SINE Alu 55 83 -66 8 1270 315 0 0 0 chr3 89838100 89838135 -69761648 + (TAAA)n Simple_repeat Simple_repeat 1 35 0 8 1270 335 298 12 12 chr3 89838374 89838459 -69761324 + PB1D10 SINE Alu 1 85 -32 8 1270 1321 90 6 0 chr3 89838855 89839032 -69760751 + B2_Mm1a SINE B2 2 179 -14 8 1270 306 0 0 0 chr3 89839032 89839066 -69760717 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 8 1270 197 33 0 32 chr3 89839142 89839173 -69760610 + (CAAAA)n Simple_repeat Simple_repeat 1 30 0 8 1270 273 228 0 0 chr3 89840084 89840141 -69759642 - B1_Mus2 SINE Alu -82 65 9 8 1270 564 309 5 30 chr3 89840141 89840338 -69759445 - B3 SINE B2 -10 206 15 8 1270 216 67 0 0 chr3 89840344 89840374 -69759409 + (T)n Simple_repeat Simple_repeat 1 30 0 8 1270 433 225 132 26 chr3 89840576 89840681 -69759102 + B1_Mur2 SINE Alu 19 137 -12 8 1270 1304 100 16 10 chr3 89840681 89840873 -69758910 + B2_Mm1t SINE B2 1 193 0 8 1270 412 333 0 9 chr3 89840891 89840997 -69758786 + RSINE1 SINE B4 1 105 -60 8 1270 266 237 34 0 chr3 89841257 89841316 -69758467 + B3A SINE B2 1 61 -137 8 1270 1117 88 7 0 chr3 89841317 89841464 -69758319 + B1_Mus1 SINE Alu 1 148 0 8 1270 696 191 2 0 chr3 89841534 89841681 -69758102 - B1_Mus2 SINE Alu 0 149 1 8 1270 229 89 44 0 chr3 89841774 89841819 -69757964 + (CAAAAA)n Simple_repeat Simple_repeat 2 48 0 8 1270 758 199 20 7 chr3 89843047 89843194 -69756589 + B1_Mur4 SINE Alu 1 149 -1 8 1270 680 218 14 7 chr3 89843566 89843714 -69756069 - B1_Mur1 SINE Alu 0 149 1 8 1270 1032 94 7 0 chr3 89843926 89844064 -69755719 + B1_Mus1 SINE Alu 2 140 -8 8 1270 27 0 0 0 chr3 89844202 89844229 -69755554 + AT_rich Low_complexity Low_complexity 1 27 0 8 1270 1216 41 7 0 chr3 89844304 89844449 -69755334 + B1_Mus1 SINE Alu 1 146 -2 8 1270 390 288 103 69 chr3 89844469 89844644 -69755139 + B3 SINE B2 27 207 -9 8 1270 411 305 69 0 chr3 89844892 89845023 -69754760 - B1_Mur2 SINE Alu -8 141 2 8 1270 501 179 221 9 chr3 89845086 89845199 -69754584 + B1_Mus2 SINE Alu 1 137 -10 8 1270 506 178 78 123 chr3 89845699 89845853 -69753930 - B1_Mur3 SINE Alu 0 149 3 8 1270 254 250 56 0 chr3 89845936 89846008 -69753775 + B1F1 SINE Alu 1 76 -73 8 1270 1471 269 120 27 chr3 89846116 89846674 -69753109 + Lx8 LINE L1 6851 7460 -13 8 1270 1230 41 0 0 chr3 89846832 89846978 -69752805 + B1_Mm SINE Alu 2 147 0 8 1270 486 329 19 6 chr3 89847880 89848036 -69751747 + RSINE1 SINE B4 4 161 -4 8 1270 246 237 194 119 chr3 89848554 89848688 -69751095 - B4A SINE B4 -143 149 6 8 1270 1200 42 0 0 chr3 89848974 89849116 -69750667 + B1_Mus2 SINE Alu 1 142 -5 8 1270 406 200 0 32 chr3 89849124 89849217 -69750566 + ID_B1 SINE B4 134 223 -1 8 1270 633 219 51 0 chr3 89849306 89849443 -69750340 + B1_Mur4 SINE Alu 5 148 -2 8 1270 467 112 0 12 chr3 89849480 89849561 -69750222 + Lx2B LINE L1 6904 6983 -17 8 1270 1354 93 11 0 chr3 89849731 89849914 -69749869 + B2_Mm2 SINE B2 2 186 -9 8 1270 243 242 194 31 chr3 89850077 89850175 -69749608 - PB1D9 SINE Alu 0 120 7 8 1270 781 206 0 40 chr3 89850266 89850418 -69749365 + B1_Mus1 SINE Alu 1 146 -2 8 1270 344 269 37 28 chr3 89850436 89850543 -69749240 + PB1D10 SINE Alu 10 117 0 8 1270 460 235 39 0 chr3 89850553 89850655 -69749128 + PB1D9 SINE Alu 1 106 -14 8 1270 342 0 0 0 chr3 89850658 89850696 -69749087 + (TAAA)n Simple_repeat Simple_repeat 2 39 0 8 1270 339 240 7 2 chr3 89850744 89850830 -69748953 + B1F1 SINE Alu 46 133 -16 8 1270 238 303 0 33 chr3 89850754 89850846 -69748937 + ID_B1 SINE B4 136 224 0 8 1270 676 188 69 84 chr3 89851064 89851267 -69748516 + URR1A DNA MER1_type 27 226 0 8 1270 407 256 0 0 chr3 89851985 89852067 -69747716 - ID4 SINE ID 0 83 2 8 1270 525 38 75 0 chr3 89852156 89852236 -69747547 + L1Md_F3 LINE L1 6499 6584 0 8 1270 252 224 0 0 chr3 89852255 89852304 -69747479 - B1F2 SINE Alu -89 60 12 8 1270 351 165 16 3 chr3 89852465 89852546 -69747237 - B1F SINE Alu -3 117 32 8 1270 492 224 37 9 chr3 89852722 89852830 -69746953 + PB1D10 SINE Alu 1 111 -6 8 1270 227 217 0 16 chr3 89852841 89852902 -69746881 + GA-rich Low_complexity Low_complexity 2 61 0 8 1270 329 315 169 34 chr3 89854727 89854875 -69744908 - L2c LINE L2 -11 3376 3197 8 1270 227 133 22 0 chr3 89856317 89856362 -69743421 + (CCG)n Simple_repeat Simple_repeat 3 48 0 8 1270 256 264 0 27 chr3 89856436 89856510 -69743273 + C-rich Low_complexity Low_complexity 5 76 0 8 1270 185 0 0 39 chr3 89856600 89856626 -69743157 + (CCCCG)n Simple_repeat Simple_repeat 2 26 0 8 1270 198 0 0 0 chr3 89856826 89856848 -69742935 + (T)n Simple_repeat Simple_repeat 1 22 0 8 1270 694 169 88 0 chr3 89858144 89858280 -69741503 + B1_Mur3 SINE Alu 2 149 0 8 1270 1186 131 11 0 chr3 89858368 89858544 -69741239 + B2_Mm1t SINE B2 2 179 -14 8 1270 279 98 334 28 chr3 89858591 89858705 -69741078 + B2_Mm2 SINE B2 47 195 0 8 1270 744 219 7 0 chr3 89858799 89858945 -69740838 + B1_Mus1 SINE Alu 2 148 0 8 1270 418 303 7 22 chr3 89859040 89859175 -69740608 - B4A SINE B4 0 292 160 8 1270 492 327 44 10 chr3 89859219 89859423 -69740360 - ID_B1 SINE B4 -7 217 7 8 1270 215 289 20 147 chr3 89859608 89859626 -69740157 - B1_Mur2 SINE Alu -18 131 1 8 1270 319 270 114 45 chr3 89859626 89859758 -69740025 - ID_B1 SINE B4 -2 222 82 8 1270 457 107 83 0 chr3 89859852 89859936 -69739847 - B1_Mus2 SINE Alu 0 147 57 8 1270 373 66 135 20 chr3 89859946 89860025 -69739758 - ORR1A2 LTR MaLR -282 112 6 8 1270 608 246 14 14 chr3 89860620 89860760 -69739023 + B1_Mur3 SINE Alu 3 142 -7 8 1270 815 102 165 0 chr3 89860830 89860957 -69738826 - B1_Mus1 SINE Alu 0 148 1 8 1270 430 239 46 0 chr3 89860988 89861097 -69738686 - PB1D9 SINE Alu -2 118 5 8 1270 368 233 218 39 chr3 89861102 89861281 -69738502 - B3 SINE B2 -1 215 5 8 1270 486 221 27 3 chr3 89861422 89861539 -69738244 - PB1D10 SINE Alu -1 116 2 8 1270 294 95 0 0 chr3 89861777 89861819 -69737964 + (T)n Simple_repeat Simple_repeat 1 42 0 8 1270 1532 42 5 35 chr3 89861850 89862049 -69737734 - B2_Mm1a SINE B2 0 193 1 8 1270 1224 55 0 0 chr3 89862085 89862231 -69737552 - B1_Mus2 SINE Alu -1 146 1 8 1270 22 35 0 0 chr3 89863009 89863038 -69736745 + AT_rich Low_complexity Low_complexity 1 29 0 8 1270 1178 55 0 7 chr3 89863038 89863185 -69736598 + B1_Mus1 SINE Alu 1 146 -2 8 1270 28 29 0 0 chr3 89863270 89863305 -69736478 + AT_rich Low_complexity Low_complexity 1 35 0 8 1270 298 243 28 14 chr3 89863489 89863560 -69736223 + ID SINE ID 1 72 -152 8 1270 1248 50 0 0 chr3 89863676 89863835 -69735948 + B2_Mm1t SINE B2 2 160 -33 8 1270 360 64 0 0 chr3 89863835 89863882 -69735901 + (TAAA)n Simple_repeat Simple_repeat 3 49 0 8 1270 928 40 16 0 chr3 89864080 89864205 -69735578 + B1_Mus2 SINE Alu 14 140 -7 8 1270 1487 58 32 0 chr3 89864265 89864454 -69735329 - B2_Mm2 SINE B2 0 195 1 8 1270 261 330 71 27 chr3 89864458 89864570 -69735213 - PB1D10 SINE Alu 0 117 1 9 1270 1119 58 0 0 chr3 89864601 89864739 -69735044 + B1_Mus1 SINE Alu 1 138 -10 9 1270 194 0 39 0 chr3 89864936 89864962 -69734821 + (TTTTG)n Simple_repeat Simple_repeat 1 27 0 9 1270 292 229 193 0 chr3 89865009 89865092 -69734691 - B1F2 SINE Alu -50 99 1 9 1270 1143 48 7 14 chr3 89865234 89865382 -69734401 + B1_Mm SINE Alu 1 147 0 9 1270 447 236 104 0 chr3 89865406 89865512 -69734271 - B3A SINE B2 -81 117 1 9 1270 269 232 97 42 chr3 89867512 89867584 -69732199 - ID SINE ID -146 78 3 9 1270 372 229 91 9 chr3 89867734 89867844 -69731939 + B1_Mur2 SINE Alu 10 128 -21 9 1270 222 276 17 0 chr3 89867867 89867925 -69731858 + ID4_ SINE ID 14 72 -11 9 1270 325 178 231 11 chr3 89868032 89868123 -69731660 + PB1D9 SINE Alu 2 112 -8 9 1270 513 0 0 0 chr3 89868550 89868607 -69731176 + (TC)n Simple_repeat Simple_repeat 1 57 0 9 1270 679 194 36 29 chr3 89868792 89868930 -69730853 - B1_Mur1 SINE Alu -9 140 2 9 1270 276 218 109 82 chr3 89868954 89869064 -69730719 - PB1D7 SINE Alu -7 113 1 9 1270 1263 98 23 0 chr3 89869803 89869977 -69729806 + B2_Mm1t SINE B2 2 179 -14 9 1270 833 60 26 0 chr3 89870420 89870537 -69729246 - B1_Mus1 SINE Alu -27 121 2 9 1270 735 240 140 0 chr3 89871397 89871576 -69728207 + B3 SINE B2 5 208 -8 9 1270 238 299 52 0 chr3 89871594 89871671 -69728112 + MIRb SINE MIR 119 199 -69 9 1270 580 245 69 7 chr3 89872084 89872228 -69727555 + RSINE1 SINE B4 1 153 -12 9 1270 710 208 21 0 chr3 89872395 89872539 -69727244 - B1_Mur4 SINE Alu -1 149 3 9 1270 264 272 26 97 chr3 89872437 89872551 -69727232 - MT2B LTR ERVL -344 257 152 9 1270 786 194 13 40 chr3 89874093 89874243 -69725540 - B1_Mur2 SINE Alu -1 148 3 9 1270 297 304 0 25 chr3 89874270 89874351 -69725432 - ID2 SINE ID 0 83 5 9 1270 255 61 0 0 chr3 89874373 89874406 -69725377 + (TA)n Simple_repeat Simple_repeat 2 34 0 9 1270 980 58 7 14 chr3 89874408 89874549 -69725234 - B2_Mm2 SINE B2 -54 141 2 9 1270 414 0 0 0 chr3 89874566 89874612 -69725171 + (TTTA)n Simple_repeat Simple_repeat 4 49 0 9 1270 1094 77 13 0 chr3 89874612 89874768 -69725015 - B2_Mm1a SINE B2 -35 158 1 9 1270 1171 75 7 0 chr3 89874787 89874934 -69724849 - B1_Mus1 SINE Alu 0 148 1 9 1270 234 0 0 0 chr3 89874949 89874975 -69724808 + (TTG)n Simple_repeat Simple_repeat 2 27 0 9 1270 1184 62 7 0 chr3 89874983 89875128 -69724655 - B1_Mus2 SINE Alu 0 147 2 9 1270 287 83 0 59 chr3 89876824 89876875 -69722908 + B1F1 SINE Alu 3 50 -99 9 1270 1378 136 18 5 chr3 89876997 89877219 -69722564 + URR1B DNA MER1_type 1 225 0 9 1270 250 319 14 0 chr3 89877903 89877975 -69721808 + ID4_ SINE ID 1 73 -10 9 1270 360 0 0 0 chr3 89877983 89878023 -69721760 + (GA)n Simple_repeat Simple_repeat 1 40 0 9 1270 180 111 0 0 chr3 89878910 89878937 -69720846 + (TTTC)n Simple_repeat Simple_repeat 4 30 0 9 1270 1174 63 0 0 chr3 89878963 89879105 -69720678 + B1_Mus1 SINE Alu 2 143 -5 9 1270 1212 41 0 20 chr3 89879130 89879267 -69720516 + B1_Mm SINE Alu 1 137 -10 9 1270 271 60 20 20 chr3 89879267 89879318 -69720465 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 9 1270 1212 41 0 20 chr3 89879318 89879330 -69720453 + B1_Mm SINE Alu 138 147 0 9 1270 978 131 47 23 chr3 89879360 89879532 -69720251 - B2_Mm2 SINE B2 -18 177 2 9 1270 550 170 37 9 chr3 89879823 89879930 -69719853 + B1_Mur2 SINE Alu 40 149 0 9 1270 261 244 90 0 chr3 89880100 89880178 -69719605 + MER58B DNA MER1_type 257 341 0 9 1270 1138 81 126 6 chr3 89880589 89880763 -69719020 - B2_Mm2 SINE B2 0 195 1 9 1270 724 229 117 64 chr3 89880869 89881135 -69718648 - B4A SINE B4 0 292 13 9 1270 350 314 51 7 chr3 89882002 89882140 -69717643 + B1F1 SINE Alu 6 149 0 9 1270 920 215 0 25 chr3 89882172 89882372 -69717411 + B2_Mm2 SINE B2 1 195 0 9 1270 838 269 14 23 chr3 89882840 89883061 -69716722 - ID_B1 SINE B4 -5 219 1 9 1270 273 57 0 0 chr3 89884819 89884854 -69714929 + (TA)n Simple_repeat Simple_repeat 2 36 0 9 1270 1216 54 0 0 chr3 89884865 89885012 -69714771 - B1_Mus2 SINE Alu 0 147 1 9 1270 227 245 186 31 chr3 89885216 89885313 -69714470 - PB1D10 SINE Alu -4 113 2 9 1270 216 0 0 0 chr3 89885472 89885496 -69714287 + (TCTG)n Simple_repeat Simple_repeat 3 26 0 9 1270 228 206 86 29 chr3 89886018 89886088 -69713695 - ID4 SINE ID -1 82 9 9 1270 218 233 33 0 chr3 89886180 89886240 -69713543 - PB1 SINE Alu -31 96 35 9 1270 1162 61 0 13 chr3 89886535 89886684 -69713099 + B1_Mus1 SINE Alu 2 148 0 9 1270 400 225 70 35 chr3 89887356 89887471 -69712312 - RSINE1 SINE B4 -4 161 43 9 1270 1157 194 0 19 chr3 89888255 89888465 -69711318 - B3 SINE B2 -10 206 1 9 1270 297 208 169 0 chr3 89889033 89889110 -69710673 - PB1D10 SINE Alu -1 116 27 9 1270 396 316 15 8 chr3 89889372 89889506 -69710277 - RSINE1 SINE B4 -28 137 3 9 1270 255 265 28 56 chr3 89889652 89889724 -69710059 + ID_B1 SINE B4 79 148 -76 9 1270 532 239 0 49 chr3 89889759 89889882 -69709901 - PB1D9 SINE Alu -3 117 1 9 1270 588 280 8 0 chr3 89889977 89890056 -69709727 + ID SINE ID 2 81 -143 9 1270 285 257 156 51 chr3 89890056 89890160 -69709623 + B1F2 SINE Alu 1 120 0 9 1270 419 301 24 136 chr3 89890666 89890771 -69709012 - ID_B1 SINE B4 -2 222 136 9 1270 1196 61 0 0 chr3 89890771 89890918 -69708865 - B1_Mus2 SINE Alu 0 147 1 9 1270 419 301 24 136 chr3 89890918 89891062 -69708721 - ID_B1 SINE B4 -89 135 1 9 1270 243 0 0 0 chr3 89891989 89892016 -69707767 + (T)n Simple_repeat Simple_repeat 1 27 0 9 1270 211 289 19 0 chr3 89892897 89892949 -69706834 + polypyrimidine Low_complexity Low_complexity 5 57 0 9 1270 283 302 0 49 chr3 89895309 89895431 -69704352 + PB1D10 SINE Alu 1 116 -1 9 1270 367 291 93 8 chr3 89895432 89895550 -69704233 + B1_Mm SINE Alu 4 131 -16 9 1270 1392 65 27 0 chr3 89897044 89897230 -69702553 - B2_Mm1a SINE B2 -1 192 2 9 1270 430 194 87 10 chr3 89897425 89897529 -69702254 - B1F1 SINE Alu -1 148 37 9 1270 273 321 59 102 chr3 89897529 89897612 -69702171 - ID_B1 SINE B4 -1 223 45 9 1270 480 189 26 43 chr3 89897853 89897969 -69701814 + PB1D10 SINE Alu 3 116 -1 9 1270 412 233 213 16 chr3 89897973 89898095 -69701688 + B1_Mur1 SINE Alu 2 147 -2 9 1270 580 182 149 0 chr3 89898104 89898225 -69701558 + B1_Mur3 SINE Alu 11 149 0 9 1270 368 268 35 9 chr3 89898476 89898589 -69701194 - PB1D9 SINE Alu -1 119 4 9 1270 351 259 45 0 chr3 89898827 89898939 -69700844 + PB1D9 SINE Alu 2 118 -2 9 1270 516 263 74 28 chr3 89899438 89899500 -69700283 + B4 SINE B4 21 90 -202 9 1270 960 82 0 7 chr3 89899500 89899624 -69700159 + B1_Mm SINE Alu 1 123 -24 9 1270 207 0 0 0 chr3 89899624 89899647 -69700136 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 9 1270 960 82 0 7 chr3 89899647 89899658 -69700125 + B1_Mm SINE Alu 124 134 -13 9 1270 353 271 55 27 chr3 89899844 89899954 -69699829 + PB1D7 SINE Alu 8 120 0 9 1270 630 154 109 39 chr3 89900180 89900308 -69699475 + B1_Mm SINE Alu 10 146 -1 9 1270 217 346 99 0 chr3 89900361 89900442 -69699341 + ID_B1 SINE B4 27 115 -109 9 1270 273 276 105 0 chr3 89900384 89900408 -69699375 + MT2C_Mm LTR ERVL 180 211 -264 9 1270 262 346 47 19 chr3 89900408 89900514 -69699269 + PB1D7 SINE Alu 1 109 -11 9 1270 1356 91 32 0 chr3 89900570 89900756 -69699027 + B2_Mm1t SINE B2 2 193 0 9 1270 529 190 68 74 chr3 89901118 89901190 -69698593 - B2_Mm2 SINE B2 -2 193 128 9 1270 1169 81 0 0 chr3 89901190 89901338 -69698445 + B1_Mus1 SINE Alu 1 148 0 9 1270 529 190 68 74 chr3 89901338 89901413 -69698370 - B2_Mm2 SINE B2 -68 127 47 9 1270 1203 99 35 0 chr3 89901441 89901612 -69698171 - B2_Mm1t SINE B2 -14 179 3 9 1270 522 179 31 1 chr3 89901674 89901796 -69697987 - B3 SINE B2 -51 142 13 9 1270 215 237 17 17 chr3 89902223 89902283 -69697500 + CT-rich Low_complexity Low_complexity 3 62 0 9 1270 216 211 0 81 chr3 89904175 89904237 -69695546 - ID4 SINE ID -25 58 2 9 1270 28 61 0 0 chr3 89904486 89904535 -69695248 + AT_rich Low_complexity Low_complexity 1 49 0 9 1270 657 226 82 86 chr3 89904957 89905162 -69694621 + B4A SINE B4 1 202 -90 9 1270 561 160 197 25 chr3 89905162 89905284 -69694499 + B1_Mus2 SINE Alu 5 147 0 9 1270 657 226 82 86 chr3 89905284 89905310 -69694473 + B4A SINE B4 203 231 -61 9 1270 702 58 289 0 chr3 89905462 89905566 -69694217 - B1_Mus2 SINE Alu -13 134 1 9 1270 537 174 58 50 chr3 89905581 89905702 -69694081 - B1_Mur4 SINE Alu 0 150 29 9 1270 23 0 0 0 chr3 89905706 89905729 -69694054 + AT_rich Low_complexity Low_complexity 1 23 0 9 1270 324 348 82 0 chr3 89905789 89905924 -69693859 - B1_Mm SINE Alu -1 146 1 9 1270 1300 77 0 93 chr3 89905934 89906149 -69693634 - B2_Mm2 SINE B2 0 195 1 9 1270 297 0 0 0 chr3 89906194 89906227 -69693556 + (GTTTG)n Simple_repeat Simple_repeat 2 34 0 9 1270 675 159 47 8 chr3 89906227 89906354 -69693429 - B1_Mus2 SINE Alu -2 145 14 9 1270 471 289 0 45 chr3 89906385 89906519 -69693264 + B1F SINE Alu 2 129 -20 9 1270 496 254 99 21 chr3 89906531 89906672 -69693111 + RSINE1 SINE B4 1 152 -13 1 1270 596 287 103 25 chr3 89906922 89907165 -69692618 - B4A SINE B4 -8 284 23 1 1270 324 250 0 7 chr3 89907202 89907276 -69692507 - B1F1 SINE Alu -46 71 1 1 1270 917 151 7 20 chr3 89907510 89907659 -69692124 - B1_Mus2 SINE Alu 0 147 1 1 1270 23 0 0 0 chr3 89907773 89907796 -69691987 + AT_rich Low_complexity Low_complexity 1 23 0 1 1270 1176 42 0 7 chr3 89908748 89908892 -69690891 + B1_Mus2 SINE Alu 5 147 0 1 1270 681 264 84 63 chr3 89909459 89909488 -69690295 - B3A SINE B2 -2 196 165 1 1270 806 78 0 9 chr3 89909488 89909604 -69690179 + (TTTC)n Simple_repeat Simple_repeat 2 116 0 1 1270 1168 112 0 0 chr3 89909604 89909764 -69690019 - B2_Mm2 SINE B2 -33 162 3 1 1270 871 197 0 0 chr3 89909767 89909914 -69689869 - B1_Mus1 SINE Alu 0 148 2 1 1270 1117 75 6 6 chr3 89909919 89910081 -69689702 + (TTTC)n Simple_repeat Simple_repeat 2 163 0 1 1270 521 190 216 0 chr3 89910998 89911114 -69688669 - B1_Mur2 SINE Alu -6 143 3 1 1270 509 248 111 0 chr3 89911128 89911245 -69688538 - B1F1 SINE Alu -8 141 12 1 1270 1088 88 0 0 chr3 89911247 89911383 -69688400 + B1_Mus1 SINE Alu 4 139 -9 1 1270 441 0 0 0 chr3 89911383 89911432 -69688351 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 1 1270 397 155 0 0 chr3 89911542 89911600 -69688183 + RSINE1 SINE B4 3 60 -105 1 1270 384 22 0 0 chr3 89911650 89911695 -69688088 + (CA)n Simple_repeat Simple_repeat 1 45 0 1 1270 443 241 25 41 chr3 89911763 89911884 -69687899 - PB1D9 SINE Alu 0 120 2 1 1270 381 287 26 53 chr3 89911937 89912051 -69687732 - RSINE1 SINE B4 -34 131 21 1 1270 180 0 0 0 chr3 89912086 89912106 -69687677 + (TG)n Simple_repeat Simple_repeat 1 20 0 1 1270 288 0 0 0 chr3 89912124 89912156 -69687627 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 1 1270 1253 20 0 20 chr3 89912156 89912294 -69687489 - B1_Mus2 SINE Alu -8 139 2 1 1270 816 226 0 0 chr3 89912324 89912470 -69687313 - B1_Mur1 SINE Alu -1 148 3 1 1270 1281 89 55 6 chr3 89912538 89912719 -69687064 - B2_Mm2 SINE B2 -3 192 3 1 1270 361 250 75 0 chr3 89912719 89912799 -69686984 - PB1D7 SINE Alu -11 109 24 1 1270 324 0 0 0 chr3 89912808 89912844 -69686939 + (TG)n Simple_repeat Simple_repeat 2 37 0 1 1270 1108 295 11 7 chr3 89912844 89913127 -69686656 - B4A SINE B4 -4 288 5 1 1270 391 320 57 8 chr3 89913129 89913252 -69686531 - B1F1 SINE Alu -19 130 2 1 1270 357 247 12 12 chr3 89913292 89913378 -69686405 + PB1D10 SINE Alu 1 86 -31 1 1270 261 220 218 10 chr3 89913499 89913600 -69686183 - L1MD3 LINE L1 -343 7652 7531 1 1270 627 285 71 13 chr3 89913654 89913892 -69685891 - L1MD3 LINE L1 -567 7428 7177 1 1270 670 284 18 0 chr3 89913921 89914035 -69685748 + ORR1D1 LTR MaLR 1 117 -257 1 1270 1283 118 48 14 chr3 89914035 89914242 -69685541 - ORR1A4 LTR MaLR 0 329 116 1 1270 546 29 0 0 chr3 89914250 89914318 -69685465 + (GTTTG)n Simple_repeat Simple_repeat 2 69 0 1 1270 805 51 244 8 chr3 89914318 89914429 -69685354 - B1_Mm SINE Alu -7 140 1 1 1270 1252 116 0 75 chr3 89914429 89914605 -69685178 - RMER6C LTR ERVK -382 308 144 1 1270 894 191 17 17 chr3 89914605 89914781 -69685002 + B2_Mm2 SINE B2 1 176 -19 1 1270 1252 116 0 75 chr3 89914781 89914818 -69684965 - RMER6C LTR ERVK -547 143 111 1 1270 1004 264 175 11 chr3 89914892 89915240 -69684543 + MTD LTR MaLR 1 405 -14 1 158 1215 54 0 0 chr3 89915329 89915477 -69684306 - B1_Mus1 SINE Alu 0 148 1 1 1271 222 171 0 0 chr3 89915504 89915545 -69684238 + T-rich Low_complexity Low_complexity 1 41 0 1 1271 911 277 33 5 chr3 89915545 89915759 -69684024 - ID_B1 SINE B4 0 224 5 1 1271 521 255 73 13 chr3 89915785 89915936 -69683847 - L1MD3 LINE L1 -1106 6776 6617 1 1271 264 59 0 0 chr3 89915940 89915974 -69683809 + (CATATA)n Simple_repeat Simple_repeat 2 35 0 1 1271 663 308 6 19 chr3 89916058 89916220 -69683563 + RSINE1 SINE B4 5 164 -1 1 1271 293 244 0 13 chr3 89916244 89916323 -69683460 - L1MD3 LINE L1 -1381 6501 6424 1 1271 343 266 162 122 chr3 89916323 89916409 -69683374 + B3 SINE B2 2 75 -141 1 1271 1207 133 21 0 chr3 89916409 89916597 -69683186 - B2_Mm1t SINE B2 -1 192 1 1 1271 343 266 162 122 chr3 89916597 89916707 -69683076 + B3 SINE B2 76 206 -10 1 1271 225 0 0 0 chr3 89916711 89916736 -69683047 + (TTG)n Simple_repeat Simple_repeat 3 27 0 1 1271 1112 79 7 0 chr3 89916737 89916877 -69682906 - B1_Mus2 SINE Alu -6 141 1 1 1271 1004 137 7 0 chr3 89916908 89917054 -69682729 + B1_Mus1 SINE Alu 1 147 -1 1 1271 221 57 0 28 chr3 89917079 89917115 -69682668 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1 1271 243 61 0 0 chr3 89917412 89917445 -69682338 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 1 1271 493 297 16 0 chr3 89917462 89917590 -69682193 + RSINE1 SINE B4 3 132 -33 1 1271 396 184 29 0 chr3 89917795 89917898 -69681885 + G-rich Low_complexity Low_complexity 6 111 0 1 1271 628 151 42 14 chr3 89917910 89918127 -69681656 + GA-rich Low_complexity Low_complexity 1 223 0 1 1271 299 257 33 84 chr3 89918129 89918234 -69681549 - PB1D7 SINE Alu -12 108 9 1 1271 534 273 13 73 chr3 89918403 89918553 -69681230 + B3 SINE B2 27 167 -49 1 1271 1171 82 41 71 chr3 89918621 89918649 -69681134 - B2_Mm2 SINE B2 -4 191 160 1 1271 387 0 0 0 chr3 89918649 89918692 -69681091 + (TTTA)n Simple_repeat Simple_repeat 3 45 0 1 1271 1171 82 41 71 chr3 89918692 89918859 -69680924 - B2_Mm2 SINE B2 -36 159 2 1 1271 427 257 65 59 chr3 89919287 89919473 -69680310 - RLTR23 LTR ERV1 0 430 244 1 1271 501 261 51 25 chr3 89919815 89919933 -69679850 - RSINE1 SINE B4 -1 164 44 1 1271 246 128 0 0 chr3 89919951 89919990 -69679793 + (TCTG)n Simple_repeat Simple_repeat 1 39 0 1 1271 732 88 10 0 chr3 89919990 89920092 -69679691 - B1_Mur4 SINE Alu -13 137 35 1 1271 343 247 61 51 chr3 89920021 89920178 -69679605 - MT2B LTR ERVL -327 257 105 1 1271 21 0 0 0 chr3 89920182 89920203 -69679580 + AT_rich Low_complexity Low_complexity 1 21 0 1 1271 1744 5 0 0 chr3 89920235 89920422 -69679361 - B2_Mm1a SINE B2 -6 187 1 1 1271 672 228 108 31 chr3 89920448 89920643 -69679140 - B3 SINE B2 -5 211 2 1 1271 250 212 14 57 chr3 89920671 89920741 -69679042 - tRNA-Ala-GCY_ tRNA tRNA -7 68 2 1 1271 668 212 71 19 chr3 89920827 89920981 -69678802 + B3 SINE B2 55 216 0 1 1271 23 54 0 0 chr3 89920981 89921018 -69678765 + AT_rich Low_complexity Low_complexity 1 37 0 1 1271 809 207 7 0 chr3 89921044 89921184 -69678599 - B1_Mur4 SINE Alu -8 142 2 1 1271 386 232 0 118 chr3 89921070 89921197 -69678586 - MT2B LTR ERVL -336 265 154 1 1271 216 0 0 0 chr3 89921221 89921245 -69678538 + (TTTA)n Simple_repeat Simple_repeat 3 26 0 1 1271 305 273 85 85 chr3 89921268 89921393 -69678390 - L1MDa LINE L1 -4055 2578 2445 1 1271 1362 85 5 0 chr3 89921393 89921581 -69678202 - B2_Mm1a SINE B2 -3 190 2 1 1271 305 273 85 85 chr3 89921581 89921667 -69678116 - L1MDa LINE L1 -4189 2444 2367 1 1271 273 304 177 21 chr3 89921713 89921854 -69677929 - RSINE1 SINE B4 0 165 3 1 1271 324 253 0 117 chr3 89922071 89922089 -69677694 + MT2B LTR ERVL 150 155 -446 1 1271 492 225 26 6 chr3 89922089 89922200 -69677583 + B1_Mur4 SINE Alu 1 117 0 1 1271 207 188 0 0 chr3 89922200 89922248 -69677535 + A-rich Low_complexity Low_complexity 1 48 0 1 1271 186 143 0 0 chr3 89922762 89922797 -69676986 + (T)n Simple_repeat Simple_repeat 1 35 0 1 1271 1272 20 0 20 chr3 89922988 89923139 -69676644 - B1_Mus1 SINE Alu 0 148 1 1 1271 721 181 50 7 chr3 89923290 89923429 -69676354 + B1_Mm SINE Alu 2 146 -1 1 1271 273 128 0 0 chr3 89923472 89923519 -69676264 + (GA)n Simple_repeat Simple_repeat 2 48 0 1 1271 309 206 58 157 chr3 89923553 89923674 -69676109 + ID_B1 SINE B4 109 217 -7 1 1271 904 124 0 0 chr3 89924062 89924191 -69675592 + B1_Mus1 SINE Alu 7 135 -13 1 1271 225 0 0 0 chr3 89924193 89924218 -69675565 + (CAAAA)n Simple_repeat Simple_repeat 3 27 0 1 1271 242 167 77 77 chr3 89924223 89924288 -69675495 + B1_Mur2 SINE Alu 85 149 0 1 1271 213 39 0 0 chr3 89924448 89924474 -69675309 + (T)n Simple_repeat Simple_repeat 1 26 0 1 1271 3501 10 0 0 chr3 89924491 89924877 -69674906 - L1Md_A LINE L1 0 6582 6197 1 1271 1456 68 16 5 chr3 89925096 89925289 -69674494 - B2_Mm2 SINE B2 0 195 1 1 1271 940 203 61 1 chr3 89925315 89925501 -69674282 + B3 SINE B2 2 197 -1 1 1271 305 82 0 20 chr3 89925519 89925569 -69674214 + (GGAAA)n Simple_repeat Simple_repeat 4 52 0 1 1271 775 181 48 18 chr3 89925844 89926025 -69673758 - B3 SINE B2 -19 176 1 1 1271 389 169 0 0 chr3 89926083 89926148 -69673635 - RLTR25A LTR ERVK -1038 65 1 1 1271 1451 80 11 0 chr3 89926183 89926371 -69673412 + B2_Mm1t SINE B2 2 191 -2 1 1271 1015 30 45 0 chr3 89926385 89926519 -69673264 + B1_Mus2 SINE Alu 7 146 -1 1 1271 982 118 0 20 chr3 89927209 89927356 -69672427 - B1_Mm SINE Alu -1 146 3 1 1271 760 232 27 40 chr3 89927360 89927568 -69672215 - B3A SINE B2 -6 210 1 1 1271 708 214 21 0 chr3 89927605 89927750 -69672033 - B1_Mur3 SINE Alu 0 149 2 1 1271 431 298 41 8 chr3 89927761 89927883 -69671900 - ID_B1 SINE B4 -9 215 90 1 1271 200 35 35 0 chr3 89927895 89927924 -69671859 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 1 1271 1302 93 16 16 chr3 89928385 89928571 -69671212 + B2_Mm2 SINE B2 3 188 -7 1 1271 613 179 209 0 chr3 89928579 89928713 -69671070 + B3A SINE B2 1 162 -36 1 1271 231 347 13 0 chr3 89928702 89928777 -69671006 - B1F1 SINE Alu -73 76 1 1 1271 642 242 145 36 chr3 89928966 89929113 -69670670 + B3 SINE B2 2 175 -41 1 1271 2280 91 28 0 chr3 89929113 89929433 -69670350 + ORR1A4 LTR MaLR 1 329 0 1 1271 642 242 145 36 chr3 89929433 89929478 -69670305 + B3 SINE B2 176 215 -1 1 1271 795 254 29 5 chr3 89929610 89929820 -69669963 - ID_B1 SINE B4 -5 219 5 1 1271 486 269 72 36 chr3 89930238 89930377 -69669406 - B1F SINE Alu 0 149 6 1 1271 213 159 0 0 chr3 89931087 89931131 -69668652 + T-rich Low_complexity Low_complexity 1 44 0 1 1271 940 46 0 64 chr3 89931131 89931271 -69668512 - B1_Mus2 SINE Alu 0 147 17 1 1271 647 212 108 26 chr3 89931271 89931325 -69668458 - ID_B1 SINE B4 0 224 15 1 1271 261 75 0 0 chr3 89931336 89931376 -69668407 + (TTTA)n Simple_repeat Simple_repeat 1 40 0 1 1271 949 110 76 0 chr3 89931382 89931527 -69668256 - B2_Mm2 SINE B2 -37 158 3 1 1271 22 0 0 0 chr3 89931635 89931657 -69668126 + AT_rich Low_complexity Low_complexity 1 22 0 1 1271 778 230 78 20 chr3 89931660 89931698 -69668085 - B3 SINE B2 0 216 181 1 1271 207 69 0 0 chr3 89931698 89931727 -69668056 + (TG)n Simple_repeat Simple_repeat 2 30 0 1 1271 778 230 78 20 chr3 89931727 89931892 -69667891 - B3 SINE B2 -36 180 2 1 1271 216 0 0 0 chr3 89932149 89932173 -69667610 + (TTG)n Simple_repeat Simple_repeat 1 24 0 1 1271 1023 202 19 15 chr3 89932253 89932459 -69667324 - B3 SINE B2 -9 207 1 1 1271 1424 73 0 15 chr3 89932490 89932685 -69667098 - B2_Mm2 SINE B2 -3 192 1 1 1271 656 243 73 7 chr3 89932713 89932850 -69666933 - RSINE1 SINE B4 -8 157 12 1 1271 688 145 0 15 chr3 89933256 89933389 -69666394 + CT-rich Low_complexity Low_complexity 2 132 0 1 1271 614 197 20 72 chr3 89933400 89933553 -69666230 - B1_Mur3 SINE Alu 0 149 5 1 1271 1009 256 144 19 chr3 89933564 89933883 -69665900 - ORR1D2 LTR MaLR -7 363 5 1 1271 256 71 95 0 chr3 89933882 89933924 -69665859 + ORR1D1 LTR MaLR 329 374 0 1 1271 653 217 34 34 chr3 89933961 89934109 -69665674 + B1_Mus1 SINE Alu 1 148 0 1 1271 558 268 28 3 chr3 89934164 89934305 -69665478 + B1F1 SINE Alu 2 144 -5 1 1271 544 268 71 24 chr3 89934362 89934390 -69665393 - B4 SINE B4 -49 243 135 1 1271 958 104 0 0 chr3 89934390 89934515 -69665268 - B1_Mm SINE Alu -22 125 1 1 1271 544 268 71 24 chr3 89934515 89934530 -69665253 - B4 SINE B4 -49 134 68 1 1271 297 0 0 0 chr3 89934610 89934643 -69665140 + (TG)n Simple_repeat Simple_repeat 1 33 0 1 1271 550 306 22 7 chr3 89934643 89934781 -69665002 - B3 SINE B2 -50 166 27 1 1271 285 29 0 0 chr3 89934786 89934820 -69664963 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 1 1271 1158 51 0 0 chr3 89934820 89934957 -69664826 - B1_Mm SINE Alu -10 137 1 1 1271 297 0 0 0 chr3 89935008 89935041 -69664742 + (CA)n Simple_repeat Simple_repeat 1 33 0 1 1271 722 156 8 8 chr3 89935174 89935297 -69664486 - B1_Mur1 SINE Alu -5 144 22 1 1271 1907 149 77 44 chr3 89935297 89935662 -69664121 - ORR1C1 LTR MaLR -1 377 1 1 1271 420 173 20 0 chr3 89936090 89936172 -69663611 + B3A SINE B2 2 87 -129 1 1271 967 240 8 25 chr3 89936352 89936595 -69663188 - ID_B1 SINE B4 -45 247 12 1 1271 22 35 0 0 chr3 89937139 89937168 -69662615 + AT_rich Low_complexity Low_complexity 1 29 0 1 1271 1023 122 0 39 chr3 89937203 89937357 -69662426 - B1_Mus1 SINE Alu 0 148 1 1 1271 24 0 0 0 chr3 89937357 89937381 -69662402 + AT_rich Low_complexity Low_complexity 1 24 0 1 1271 230 367 0 0 chr3 89937404 89937464 -69662319 - B3 SINE B2 -54 162 103 1 1271 239 54 27 0 chr3 89937505 89937542 -69662241 + (TTTG)n Simple_repeat Simple_repeat 1 38 0 1 1271 837 199 15 0 chr3 89937546 89937677 -69662106 - B1_Mur4 SINE Alu -17 133 1 1 1271 751 235 89 6 chr3 89937682 89937752 -69662031 - B3A SINE B2 0 198 129 1 1271 3862 56 70 6 chr3 89937752 89938240 -69661543 - MURVY-LTR LTR ERV1 0 519 1 1 1271 751 235 89 6 chr3 89938240 89938349 -69661434 - B3A SINE B2 -70 128 4 1 1271 446 213 4 11 chr3 89939099 89939206 -69660577 - PB1D10 SINE Alu -1 116 12 1 1271 845 209 104 112 chr3 89939459 89939728 -69660055 + MTD LTR MaLR 153 419 0 1 1271 230 224 41 0 chr3 89940183 89940232 -69659551 - PB1D10 SINE Alu -3 114 64 1 1271 210 139 0 0 chr3 89940244 89940280 -69659503 + (TGAG)n Simple_repeat Simple_repeat 1 36 0 1 1271 1100 197 15 25 chr3 89940941 89941144 -69658639 - B3 SINE B2 -15 201 1 1 1271 826 241 18 0 chr3 89941222 89941388 -69658395 + ID_B1 SINE B4 2 170 -54 1 1271 1231 41 0 0 chr3 89941445 89941592 -69658191 + B1_Mus2 SINE Alu 1 147 0 1 1271 234 0 0 0 chr3 89941592 89941618 -69658165 + (A)n Simple_repeat Simple_repeat 1 26 0 1 1271 257 239 72 29 chr3 89941738 89941807 -69657976 + ID4 SINE ID 4 75 -8 1 1271 333 316 13 0 chr3 89941802 89941881 -69657902 - B4A SINE B4 -193 99 20 1 1271 39 38 0 0 chr3 89941881 89941934 -69657849 + AT_rich Low_complexity Low_complexity 1 53 0 1 1271 291 157 39 8 chr3 89941944 89942072 -69657711 + (TA)n Simple_repeat Simple_repeat 2 133 0 1 1271 1113 81 0 33 chr3 89942082 89942235 -69657548 - B1_Mus1 SINE Alu 0 148 1 1 1271 548 259 6 74 chr3 89942288 89942463 -69657320 - RSINE1 SINE B4 -1 164 2 1 1271 324 0 0 0 chr3 89942484 89942520 -69657263 + (TG)n Simple_repeat Simple_repeat 1 36 0 1 1271 497 260 51 70 chr3 89942526 89942608 -69657175 - RSINE1 SINE B4 -10 155 80 1 1271 1283 208 126 51 chr3 89942608 89942998 -69656785 - MTD LTR MaLR 0 419 1 1 1271 497 260 51 70 chr3 89942998 89943072 -69656711 - RSINE1 SINE B4 -86 79 2 1 1271 298 255 34 68 chr3 89943164 89943282 -69656501 + PB1D10 SINE Alu 2 115 -2 1 1271 251 273 194 24 chr3 89944070 89944194 -69655589 + RSINE1 SINE B4 3 147 -18 1 1271 242 116 23 0 chr3 89944249 89944292 -69655491 + (ATGGTG)n Simple_repeat Simple_repeat 4 47 0 1 1271 363 122 182 39 chr3 89944305 89944382 -69655401 + B1_Mur2 SINE Alu 60 147 -2 1 1271 1421 60 22 11 chr3 89944416 89944601 -69655182 + B2_Mm2 SINE B2 1 187 -8 1 1271 21 0 0 0 chr3 89944601 89944622 -69655161 + AT_rich Low_complexity Low_complexity 1 21 0 1 1271 2314 125 65 8 chr3 89944975 89945347 -69654436 - ORR1B1 LTR MaLR 0 394 2 1 1271 1494 210 138 3 chr3 89945465 89945819 -69653964 - MTD LTR MaLR 0 419 18 1 1271 559 275 99 0 chr3 89945871 89946002 -69653781 + B1_Mur1 SINE Alu 3 146 -3 1 1271 517 185 125 44 chr3 89946006 89946142 -69653641 + B1_Mur4 SINE Alu 1 147 -3 1 1271 556 223 25 8 chr3 89946198 89946320 -69653463 - B1F SINE Alu -10 139 16 1 1271 363 261 14 81 chr3 89946522 89946664 -69653119 - PB1D7 SINE Alu -2 145 6 1 1271 445 221 87 0 chr3 89946735 89946839 -69652944 + ID_B1 SINE B4 103 215 -9 1 1271 392 0 21 0 chr3 89946891 89946939 -69652844 + (TG)n Simple_repeat Simple_repeat 1 49 0 1 1271 1102 58 14 0 chr3 89946940 89947079 -69652704 - B1_Mm SINE Alu -6 141 1 1 1271 2101 170 22 15 chr3 89947142 89947548 -69652235 + MTC LTR MaLR 5 413 -8 1 1271 819 174 14 0 chr3 89947552 89947690 -69652093 + B1_Mur4 SINE Alu 1 140 -10 1 1271 21 36 0 0 chr3 89947698 89947726 -69652057 + AT_rich Low_complexity Low_complexity 1 28 0 1 1271 281 260 83 0 chr3 89947878 89947974 -69651809 - PB1D10 SINE Alu -7 110 7 1 1271 416 219 0 0 chr3 89948405 89948487 -69651296 - PB1D10 SINE Alu -15 102 21 1 1271 532 310 90 30 chr3 89948642 89948908 -69650875 - B4A SINE B4 -10 282 1 1 1271 827 200 162 5 chr3 89949166 89949357 -69650426 - ID_B1 SINE B4 -1 223 3 1 1271 195 42 0 0 chr3 89949812 89949836 -69649947 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 1 1271 1085 87 6 0 chr3 89949836 89949997 -69649786 - B2_Mm2 SINE B2 -32 163 2 1 1271 248 218 51 90 chr3 89949999 89950155 -69649628 - RLTR11A2 LTR ERVK -58 395 246 1 1271 181 175 70 0 chr3 89950221 89950278 -69649505 + CT-rich Low_complexity Low_complexity 3 63 0 1 1271 260 275 0 0 chr3 89950361 89950430 -69649353 - RLTR11A2 LTR ERVK -458 69 1 1 1271 230 296 103 27 chr3 89950432 89950578 -69649205 - RMER2 LTR ERV1 0 567 411 1 1271 551 280 76 63 chr3 89950910 89951338 -69648445 - RLTR6-int LTR ERV1 0 7778 7141 1 1271 1035 58 65 0 chr3 89951968 89952106 -69647677 + B1_Mus2 SINE Alu 1 147 0 1 1271 339 85 0 0 chr3 89952106 89952153 -69647630 + (A)n Simple_repeat Simple_repeat 1 47 0 1 1271 260 27 27 0 chr3 89952396 89952433 -69647350 + (TTG)n Simple_repeat Simple_repeat 2 39 0 1 1271 1187 37 0 0 chr3 89952433 89952569 -69647214 - B1_Mus1 SINE Alu -8 140 5 1 1271 655 76 14 138 chr3 89952573 89952623 -69647160 - B2_Mm2 SINE B2 -4 191 160 1 1271 228 67 0 0 chr3 89952623 89952653 -69647130 + (TTTG)n Simple_repeat Simple_repeat 3 32 0 1 1271 655 76 14 138 chr3 89952653 89952740 -69647043 - B2_Mm2 SINE B2 -36 159 71 1 1271 356 301 31 31 chr3 89953411 89953538 -69646245 - MuRRS4-int LTR ERV1 -2023 5578 5492 1 1271 1370 328 37 24 chr3 89953688 89954179 -69645604 - MuRRS4-int LTR ERV1 -1037 4026 3530 1 1271 475 248 16 8 chr3 89954314 89954436 -69645347 - B3 SINE B2 -93 123 1 1 1271 902 136 0 7 chr3 89954497 89954645 -69645138 - B1_Mus2 SINE Alu 0 147 1 1 1271 324 200 25 8 chr3 89954538 89954659 -69645124 - ORR1B1-int LTR MaLR -755 754 632 1 1271 1028 59 79 22 chr3 89954675 89954814 -69644969 + B1_Mus2 SINE Alu 1 147 0 1 1271 424 221 11 0 chr3 89954875 89954970 -69644813 - ID_B1 SINE B4 -11 213 118 1 1271 265 308 100 0 chr3 89954970 89954997 -69644786 - B1F2 SINE Alu -3 118 4 1 1271 215 125 100 40 chr3 89955332 89955382 -69644401 - PB1D10 SINE Alu 0 117 65 1 1271 562 251 32 79 chr3 89955342 89955558 -69644225 - ID_B1 SINE B4 -8 216 11 1 1271 510 102 42 8 chr3 89955718 89955837 -69643946 + (TA)n Simple_repeat Simple_repeat 1 123 0 1 1271 1093 193 0 45 chr3 89956078 89956300 -69643483 + B3 SINE B2 1 212 -4 1 1271 960 85 261 0 chr3 89956320 89956473 -69643310 + B2_Mm2 SINE B2 1 193 -2 1 1271 819 198 60 16 chr3 89956684 89956869 -69642914 + Lx9 LINE L1 7200 7392 -252 1 1271 1836 139 65 0 chr3 89956873 89957197 -69642586 - MTC LTR MaLR -8 413 69 1 1271 597 175 0 0 chr3 89957244 89957381 -69642402 + CT-rich Low_complexity Low_complexity 4 140 0 1 1271 201 121 0 0 chr3 89957392 89957425 -69642358 + (TTTC)n Simple_repeat Simple_repeat 3 35 0 1 1271 681 159 95 0 chr3 89957427 89957553 -69642230 - B1_Mur4 SINE Alu -6 144 7 1 1271 379 184 40 0 chr3 89957558 89957634 -69642149 - MTC LTR MaLR -340 81 3 1 1271 1029 165 35 46 chr3 89957634 89957880 -69641903 + Lx9 LINE L1 7388 7632 -12 1 1271 628 250 0 45 chr3 89957880 89958035 -69641748 + B1_Mur2 SINE Alu 1 148 -1 1 1271 1029 165 35 46 chr3 89958035 89958048 -69641735 + Lx9 LINE L1 7633 7644 0 1 1271 21 0 0 0 chr3 89958107 89958128 -69641655 + AT_rich Low_complexity Low_complexity 1 21 0 1 1271 578 165 25 0 chr3 89958138 89958259 -69641524 + Lx9 LINE L1 7517 7640 -4 1 1271 1199 63 0 0 chr3 89958704 89958847 -69640936 - B1_Mm SINE Alu -4 143 1 1 1271 521 282 84 81 chr3 89958884 89959074 -69640709 - B4A SINE B4 -6 286 91 1 1271 1495 78 5 0 chr3 89959074 89959266 -69640517 - B2_Mm1t SINE B2 0 193 1 1 1271 521 282 84 81 chr3 89959266 89959360 -69640423 - B4A SINE B4 -202 90 1 1 1271 614 293 28 6 chr3 89959411 89959593 -69640190 - B3A SINE B2 -12 186 1 1 1271 919 128 0 39 chr3 89959709 89959863 -69639920 - B1_Mur4 SINE Alu 0 150 3 1 1271 324 264 164 27 chr3 89959886 89960099 -69639684 + MTE2a LTR MaLR 143 378 -1 1 1271 383 267 8 8 chr3 89960141 89960258 -69639525 - L1MB3 LINE L1 -119 6052 5936 1 1271 562 232 74 1 chr3 89960441 89960595 -69639188 - L1MB3 LINE L1 -491 5842 5679 1 1271 417 269 9 27 chr3 89960597 89960708 -69639075 + PB1D7 SINE Alu 1 109 -11 1 1271 774 75 0 0 chr3 89960708 89960814 -69638969 + (GGAA)n Simple_repeat Simple_repeat 3 108 0 1 1271 848 119 37 7 chr3 89960871 89961006 -69638777 + B1_Mur4 SINE Alu 1 139 -11 1 1271 266 304 61 9 chr3 89961026 89961155 -69638628 - L1M4 LINE L1 -540 5638 5497 1 1271 361 307 13 20 chr3 89961220 89961373 -69638410 + B4A SINE B4 11 162 -130 1 1271 518 280 56 25 chr3 89961514 89961675 -69638108 - Lx8 LINE L1 -139 7334 7169 1 1271 465 222 29 29 chr3 89961727 89961829 -69637954 + B3A SINE B2 82 183 -15 1 1271 216 258 79 16 chr3 89961844 89961907 -69637876 + B3 SINE B2 2 68 -148 1 1271 346 292 117 0 chr3 89962002 89962122 -69637661 + B4 SINE B4 65 198 -94 1 1271 648 181 0 52 chr3 89962023 89962140 -69637643 + B1_Mus2 SINE Alu 9 123 -24 1 1271 603 0 0 0 chr3 89962140 89962207 -69637576 + (TC)n Simple_repeat Simple_repeat 2 68 0 1 1271 1226 36 0 0 chr3 89962209 89962349 -69637434 - B1_Mm SINE Alu -6 141 2 1 1271 648 181 0 52 chr3 89962349 89962362 -69637421 + B1_Mus2 SINE Alu 124 135 -12 1 1271 192 77 0 0 chr3 89962363 89962389 -69637394 + (CAA)n Simple_repeat Simple_repeat 2 27 0 1 1271 211 239 0 0 chr3 89962571 89962617 -69637166 + (TTTA)n Simple_repeat Simple_repeat 4 49 0 1 1271 251 277 34 67 chr3 89962634 89962723 -69637060 - RSINE1 SINE B4 -79 86 1 1 1271 715 205 0 0 chr3 89962898 89963025 -69636758 - B1_Mur2 SINE Alu -21 128 2 1 1271 474 18 0 0 chr3 89963029 89963084 -69636699 + (TTTTG)n Simple_repeat Simple_repeat 1 55 0 1 1271 976 67 0 0 chr3 89963084 89963218 -69636565 - B1_Mus1 SINE Alu -13 135 2 1 1271 431 290 60 37 chr3 89963272 89963487 -69636296 - ID_B1 SINE B4 -3 221 2 1 1271 192 40 0 0 chr3 89963487 89963512 -69636271 + (TG)n Simple_repeat Simple_repeat 2 26 0 1 1271 533 237 29 15 chr3 89964057 89964194 -69635589 - RMER20A LTR ERVK -66 450 312 1 1271 1057 214 74 30 chr3 89964377 89964676 -69635107 - RMER20A LTR ERVK -204 312 1 1 1271 455 171 26 0 chr3 89964916 89964992 -69634791 - PB1D10 SINE Alu -35 82 5 1 1271 471 127 0 12 chr3 89965042 89965122 -69634661 - MTC LTR MaLR -339 82 4 1 1271 311 222 14 0 chr3 89965338 89965410 -69634373 + MTEa LTR MaLR 18 90 -289 1 1271 830 172 65 11 chr3 89965465 89965650 -69634133 - ORR1D1 LTR MaLR -107 252 49 1 1271 850 157 250 0 chr3 89965954 89966126 -69633657 - B3 SINE B2 0 216 2 1 1271 473 172 0 22 chr3 89966211 89966300 -69633483 - B1_Mur2 SINE Alu 0 149 63 1 1271 599 206 7 37 chr3 89966647 89966783 -69633000 + RSINE1 SINE B4 32 163 -2 1 1271 850 125 0 65 chr3 89966814 89966968 -69632815 - RMER6A LTR ERVK 0 756 613 1 1271 990 70 245 31 chr3 89966964 89967156 -69632627 - RMER6A LTR ERVK -523 233 1 1 1271 759 220 0 7 chr3 89967388 89967530 -69632253 + B1_Mur4 SINE Alu 5 145 -5 1 1271 651 164 107 0 chr3 89967556 89967678 -69632105 + B1_Mur4 SINE Alu 3 137 -13 1 1271 622 80 267 35 chr3 89967679 89967795 -69631988 + B1_Mm SINE Alu 5 147 0 1 1271 596 219 109 7 chr3 89967873 89968011 -69631772 + B3 SINE B2 1 152 -64 1 1271 266 325 12 0 chr3 89968103 89968183 -69631600 - ID SINE ID -143 81 1 1 1271 843 164 0 22 chr3 89968357 89968494 -69631289 + B1_Mur3 SINE Alu 5 138 -11 1 1271 2151 137 20 67 chr3 89968494 89968900 -69630883 - ORR1B1 LTR MaLR -7 387 1 1 1271 498 203 36 10 chr3 89968929 89969048 -69630735 + PB1D9 SINE Alu 1 120 0 1 1271 720 35 0 0 chr3 89969048 89969135 -69630648 + (TAGA)n Simple_repeat Simple_repeat 4 90 0 1 1271 691 243 52 57 chr3 89969149 89969303 -69630480 + B3A SINE B2 3 164 -34 1 1271 288 0 0 0 chr3 89969303 89969335 -69630448 + (TC)n Simple_repeat Simple_repeat 1 32 0 1 1271 312 27 0 0 chr3 89969335 89969371 -69630412 + (CA)n Simple_repeat Simple_repeat 1 37 0 1 1271 691 243 52 57 chr3 89969371 89969407 -69630376 + B3A SINE B2 165 192 -6 1 1271 480 153 0 0 chr3 89969532 89969617 -69630166 + T-rich Low_complexity Low_complexity 1 85 0 1 1271 886 85 106 15 chr3 89969624 89969756 -69630027 - B1_Mus1 SINE Alu -2 146 3 1 1271 426 329 62 62 chr3 89969779 89970085 -69629698 - B4 SINE B4 -19 273 5 1 1271 568 227 12 35 chr3 89970118 89970261 -69629522 + B3A SINE B2 7 130 -86 1 1271 2499 131 56 0 chr3 89970261 89970634 -69629149 - ORR1B1 LTR MaLR 0 394 1 1 1271 546 271 31 113 chr3 89970634 89970719 -69629064 + B3 SINE B2 131 216 0 1 1271 250 45 22 22 chr3 89970727 89970772 -69629011 + (TATAA)n Simple_repeat Simple_repeat 4 48 0 1 1271 1634 37 0 0 chr3 89971208 89971396 -69628387 - B2_Mm1t SINE B2 -4 189 2 1 1271 240 59 0 0 chr3 89971440 89971474 -69628309 + (TG)n Simple_repeat Simple_repeat 2 35 0 1 1271 499 254 28 28 chr3 89971483 89971625 -69628158 - RSINE1 SINE B4 -22 143 2 1 1271 263 346 0 0 chr3 89971993 89972071 -69627712 + ID4 SINE ID 3 80 -3 1 1271 249 312 0 0 chr3 89972114 89972178 -69627605 + ID4 SINE ID 18 81 -2 1 1271 433 298 67 39 chr3 89972129 89972307 -69627476 + ID_B1 SINE B4 34 216 -8 1 1271 361 149 15 0 chr3 89972454 89972521 -69627262 - RLTR11B LTR ERVK -385 68 1 1 1271 842 179 196 0 chr3 89972643 89972822 -69626961 + B3 SINE B2 3 216 0 1 1271 315 0 0 0 chr3 89973155 89973190 -69626593 + (CA)n Simple_repeat Simple_repeat 2 36 0 1 1271 459 0 0 0 chr3 89973413 89973464 -69626319 + (TG)n Simple_repeat Simple_repeat 1 51 0 1 1271 211 186 0 44 chr3 89973586 89973631 -69626152 + GA-rich Low_complexity Low_complexity 3 45 0 1 1271 866 169 36 21 chr3 89973644 89973837 -69625946 + Lx4B LINE L1 6859 7054 -4 1 1271 743 177 126 63 chr3 89974107 89974282 -69625501 + B3 SINE B2 4 189 -6 1 1271 286 67 12 74 chr3 89974644 89974689 -69625094 + T-rich Low_complexity Low_complexity 34 77 0 1 1271 1164 68 7 0 chr3 89974689 89974835 -69624948 - B1_Mus2 SINE Alu 0 147 1 1 1271 286 67 12 74 chr3 89974835 89974870 -69624913 + T-rich Low_complexity Low_complexity 3 33 0 1 1271 420 20 0 0 chr3 89974887 89974936 -69624847 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 1271 1421 165 267 31 chr3 89975046 89975461 -69624322 - RLTR11A LTR ERVK 0 528 16 1 1271 1949 164 17 17 chr3 89975472 89975826 -69623957 - ORR1B1 LTR MaLR -38 356 3 1 1271 339 231 17 111 chr3 89976424 89976541 -69623242 - B1F SINE Alu -1 148 43 1 1271 211 323 0 0 chr3 89976603 89976668 -69623115 + PB1D10 SINE Alu 46 110 -7 1 1271 21 0 0 0 chr3 89976714 89976735 -69623048 + AT_rich Low_complexity Low_complexity 1 21 0 1 1271 762 175 36 0 chr3 89976751 89976888 -69622895 + B1_Mur3 SINE Alu 8 149 0 1 1271 656 164 98 0 chr3 89976890 89977012 -69622771 + B1_Mus1 SINE Alu 1 134 -14 1 1271 465 19 0 0 chr3 89977012 89977066 -69622717 + (TC)n Simple_repeat Simple_repeat 2 55 0 1 1271 500 177 0 15 chr3 89977066 89977198 -69622585 + (CATATA)n Simple_repeat Simple_repeat 2 131 0 1 1271 643 248 0 8 chr3 89977204 89977338 -69622445 - B1_Mur4 SINE Alu -9 141 9 1 1271 476 253 224 0 chr3 89977372 89977542 -69622241 + ID_B1 SINE B4 3 210 -14 1 1271 502 237 68 0 chr3 89977571 89977689 -69622094 + B1F SINE Alu 14 139 -10 1 1271 465 19 0 0 chr3 89977690 89977744 -69622039 + (GA)n Simple_repeat Simple_repeat 1 54 0 1 1271 382 257 29 19 chr3 89977744 89977841 -69621942 + B1_Mur1 SINE Alu 30 128 -21 1 1271 427 246 113 28 chr3 89977874 89978016 -69621767 + RSINE1 SINE B4 4 157 -8 1 1271 408 272 48 0 chr3 89978539 89978642 -69621141 + PB1D10 SINE Alu 2 109 -8 1 1271 1007 175 76 48 chr3 89978653 89978863 -69620920 + B3 SINE B2 1 216 0 1 1271 1463 72 5 5 chr3 89979072 89979267 -69620516 + B2_Mm2 SINE B2 1 195 0 1 1271 387 242 74 0 chr3 89979276 89979371 -69620412 + PB1D10 SINE Alu 3 104 -13 1 1271 475 196 16 71 chr3 89979589 89979715 -69620068 + PB1D9 SINE Alu 1 119 -1 1 1271 1127 68 7 0 chr3 89979971 89980118 -69619665 - B1_Mus1 SINE Alu 0 148 1 1 1271 311 227 121 20 chr3 89980300 89980399 -69619384 + RSINE1 SINE B4 48 156 -9 1 1271 900 131 44 0 chr3 89980420 89980557 -69619226 + B1_Mur2 SINE Alu 4 146 -3 1 1271 382 234 51 51 chr3 89980601 89980718 -69619065 - B3 SINE B2 -1 215 99 1 1271 1425 83 5 0 chr3 89980737 89980929 -69618854 - B2_Mm1a SINE B2 0 193 1 1 1271 285 29 0 0 chr3 89980931 89980965 -69618818 + (T)n Simple_repeat Simple_repeat 1 34 0 1 1271 1426 71 27 0 chr3 89980985 89981168 -69618615 - B2_Mm2 SINE B2 -7 188 1 1 1271 435 108 0 24 chr3 89981171 89981256 -69618527 - L1Md_F2 LINE L1 0 6582 6500 1 1271 3328 31 23 0 chr3 89981258 89981642 -69618141 - MTA_Mm LTR MaLR -3 393 1 1 1271 556 200 0 0 chr3 89981642 89981742 -69618041 - B3 SINE B2 -113 103 4 1 1271 797 56 9 0 chr3 89981743 89981850 -69617933 + (TC)n Simple_repeat Simple_repeat 1 108 0 1 1271 260 254 45 0 chr3 89981852 89981919 -69617864 - PB1 SINE Alu -45 82 13 1 1271 215 359 13 0 chr3 89981865 89981943 -69617840 - B4A SINE B4 -140 152 74 1 1271 546 242 47 0 chr3 89981957 89982085 -69617698 - B1_Mur1 SINE Alu -14 135 2 1 1271 477 236 319 7 chr3 89982124 89982265 -69617518 - ID_B1 SINE B4 -1 223 39 1 1271 229 182 127 0 chr3 89982353 89982408 -69617375 + B3 SINE B2 1 62 -154 1 1271 920 233 56 28 chr3 89982493 89982745 -69617038 + B4A SINE B4 34 292 0 1 1271 934 206 82 10 chr3 89982835 89983031 -69616752 + B3 SINE B2 2 211 -5 1 1271 398 237 20 20 chr3 89983062 89983161 -69616622 + B1F2 SINE Alu 43 141 -8 1 1271 365 224 16 0 chr3 89983199 89983290 -69616493 + ID4 SINE ID 12 104 -48 1 1271 782 48 0 0 chr3 89983333 89983437 -69616346 - B1_Mus1 SINE Alu -9 139 36 1 1271 678 168 243 23 chr3 89983463 89983640 -69616143 - B3 SINE B2 0 216 1 1 1271 283 174 0 0 chr3 89983837 89983883 -69615900 - RSINE1 SINE B4 -96 69 24 1 1271 1310 116 21 0 chr3 89984194 89984383 -69615400 - B2_Mm2 SINE B2 -1 194 2 1 1271 863 172 196 22 chr3 89984404 89984588 -69615195 - B3 SINE B2 0 216 1 1 1271 459 277 10 0 chr3 89984592 89984693 -69615090 - PB1D7 SINE Alu 0 120 19 1 1271 1046 183 53 19 chr3 89984752 89984958 -69614825 - B3 SINE B2 0 216 4 1 1271 209 0 0 88 chr3 89985956 89985990 -69613793 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1 1271 1194 173 25 5 chr3 89985992 89986195 -69613588 - B3 SINE B2 -9 207 1 1 1271 364 257 95 0 chr3 89986206 89986311 -69613472 - PB1D7 SINE Alu -5 115 1 1 1271 258 193 323 40 chr3 89986609 89986733 -69613050 - B3A SINE B2 -38 160 2 1 1271 640 221 15 0 chr3 89986766 89986897 -69612886 - B1_Mur2 SINE Alu -15 134 2 1 1271 21 0 0 0 chr3 89986988 89987009 -69612774 + AT_rich Low_complexity Low_complexity 1 21 0 1 1271 210 37 0 0 chr3 89987296 89987323 -69612460 + (A)n Simple_repeat Simple_repeat 1 27 0 1 1271 568 207 50 25 chr3 89987334 89987453 -69612330 + B1_Mur1 SINE Alu 1 122 -27 1 1271 471 206 253 23 chr3 89987844 89988018 -69611765 - B3 SINE B2 -1 215 2 1 1271 346 301 21 0 chr3 89988018 89988111 -69611672 + PB1D10 SINE Alu 10 104 -13 1 1271 468 51 0 0 chr3 89988125 89988184 -69611599 + (GGAA)n Simple_repeat Simple_repeat 1 59 0 1 1271 608 231 7 15 chr3 89988197 89988333 -69611450 + ID_B1 SINE B4 80 214 -10 1 1271 693 170 183 0 chr3 89988344 89988458 -69611325 + B3 SINE B2 36 163 -53 1 1271 443 48 0 16 chr3 89988458 89988521 -69611262 + (CA)n Simple_repeat Simple_repeat 1 62 0 1 1271 693 170 183 0 chr3 89988521 89988559 -69611224 + B3 SINE B2 164 215 -1 1 1271 1041 136 43 43 chr3 89988566 89988750 -69611033 + B2_Mm2 SINE B2 2 185 -10 1 1271 265 331 32 0 chr3 89988859 89988983 -69610800 + GA-rich Low_complexity Low_complexity 2 129 0 1 1271 631 209 35 41 chr3 89989043 89989188 -69610595 - B1_Mur2 SINE Alu -5 144 1 1 1271 266 274 0 16 chr3 89989629 89989692 -69610091 + RSINE1 SINE B4 32 93 -72 1 1271 790 153 0 12 chr3 89990213 89990378 -69609405 + CT-rich Low_complexity Low_complexity 3 165 0 1 1271 333 0 0 0 chr3 89990535 89990572 -69609211 + (CA)n Simple_repeat Simple_repeat 1 37 0 1 1271 572 193 18 0 chr3 89990602 89990716 -69609067 + B1_Mur4 SINE Alu 34 149 -1 1 1271 303 286 0 0 chr3 89990836 89991014 -69608769 + (TG)n Simple_repeat Simple_repeat 2 179 0 1 1271 248 250 9 0 chr3 89991040 89991152 -69608631 + (TG)n Simple_repeat Simple_repeat 2 114 0 1 1271 628 244 19 13 chr3 89991315 89991473 -69608310 - ID_B1 SINE B4 -1 223 65 1 1271 1341 87 16 11 chr3 89991550 89991737 -69608046 - B2_Mm2 SINE B2 -7 188 1 1 1271 257 303 0 33 chr3 89991751 89991843 -69607940 - L1M3 LINE L1 -441 5739 5651 1 1271 505 271 0 52 chr3 89991892 89991952 -69607831 + ID_B1 SINE B4 76 134 -90 1 1271 2395 143 57 10 chr3 89991952 89992354 -69607429 + MTC LTR MaLR 1 421 0 1 1271 505 271 0 52 chr3 89992354 89992429 -69607354 + ID_B1 SINE B4 135 204 -20 1 1271 410 208 88 88 chr3 89992455 89992592 -69607191 + ID_B1 SINE B4 80 216 -8 1 1271 606 152 81 23 chr3 89992676 89992808 -69606975 - B1_Mur4 SINE Alu 0 150 5 1 1271 1433 74 16 26 chr3 89992823 89993017 -69606766 - B2_Mm2 SINE B2 -2 193 2 1 1271 367 314 36 0 chr3 89993120 89993260 -69606523 - B1F SINE Alu 0 149 5 1 1271 289 241 25 12 chr3 89993548 89993628 -69606155 + ID4 SINE ID 1 81 -2 1 1271 473 298 0 0 chr3 89993833 89993947 -69605836 + PB1D7 SINE Alu 1 114 -6 1 1271 421 252 128 88 chr3 89994405 89994679 -69605104 + B4 SINE B4 1 285 -7 1 1271 241 338 7 86 chr3 89995094 89995246 -69604537 + B1F1 SINE Alu 1 140 -9 1 1271 275 275 54 121 chr3 89995263 89995329 -69604454 + ID SINE ID 3 68 -156 1 1271 369 0 0 0 chr3 89995329 89995370 -69604413 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 1271 275 275 54 121 chr3 89995370 89995399 -69604384 + ID SINE ID 69 88 -136 1 1271 302 191 109 14 chr3 89995399 89995478 -69604305 + B1F SINE Alu 1 84 -36 1 1271 688 225 14 7 chr3 89995478 89995621 -69604162 + B3A SINE B2 3 146 -52 1 1271 324 0 0 0 chr3 89995627 89995663 -69604120 + (CA)n Simple_repeat Simple_repeat 1 36 0 1 1271 424 152 226 9 chr3 89995695 89995801 -69603982 + B1_Mur1 SINE Alu 21 149 0 1 1271 492 245 33 73 chr3 89995995 89996145 -69603638 + ID_B1 SINE B4 81 224 0 1 1271 732 196 7 27 chr3 89996162 89996309 -69603474 + B1_Mur2 SINE Alu 6 149 0 1 1271 617 213 8 0 chr3 89996360 89996482 -69603301 + ID_B1 SINE B4 92 214 -10 1 1271 487 222 74 0 chr3 89996479 89996587 -69603196 + RSINE1 SINE B4 7 122 -43 1 1271 780 203 0 0 chr3 89997138 89997271 -69602512 + B1_Mur1 SINE Alu 5 137 -12 1 1271 224 241 155 0 chr3 89997357 89997415 -69602368 - RSINE1 SINE B4 -87 78 12 1 1271 1001 130 14 0 chr3 89997618 89997764 -69602019 + B1_Mur4 SINE Alu 2 149 -1 1 1271 23 0 0 0 chr3 89997764 89997787 -69601996 + AT_rich Low_complexity Low_complexity 1 23 0 1 1271 662 245 101 81 chr3 89997790 89997999 -69601784 + B3 SINE B2 2 214 -2 1 1271 27 29 0 0 chr3 89998002 89998036 -69601747 + AT_rich Low_complexity Low_complexity 1 34 0 1 1271 270 0 0 0 chr3 89998067 89998097 -69601686 + (CA)n Simple_repeat Simple_repeat 2 31 0 1 1271 417 255 49 0 chr3 89998196 89998298 -69601485 - RSINE1 SINE B4 -8 157 51 1 1271 1470 75 5 0 chr3 89998300 89998488 -69601295 + B2_Mm1a SINE B2 1 189 -4 1 1271 1631 169 91 29 chr3 89999190 89999651 -69600132 + RMER4B LTR ERVK 17 463 -3 1 1271 337 236 0 53 chr3 89999924 90000000 -69599783 - RSINE1 SINE B4 -21 144 73 1 1271 322 190 20 2 chr3 90000000 90000069 -69599714 - RSINE1 SINE B4 -221 71 1 1 1271 773 219 7 7 chr3 90000209 90000356 -69599427 + B1_Mur2 SINE Alu 2 148 -1 2 1271 228 61 0 0 chr3 90000357 90000390 -69599393 + B3 SINE B2 1 33 -183 3 1271 496 223 43 0 chr3 90000403 90000497 -69599286 + RLTR28 LTR ERVL 1 98 -426 4 1271 2209 122 61 81 chr3 90000514 90000958 -69598825 + RLTR28 LTR ERVL 78 512 -12 4 1271 392 233 0 0 chr3 90000963 90001036 -69598747 + B3 SINE B2 63 135 -81 5 1271 194 91 0 29 chr3 90001063 90001097 -69598686 + (GTTTG)n Simple_repeat Simple_repeat 2 34 0 6 1271 542 172 76 69 chr3 90001103 90001247 -69598536 - B1_Mur3 SINE Alu 0 149 5 7 1271 416 239 23 0 chr3 90001251 90001339 -69598444 + B3 SINE B2 123 212 -4 5 1271 924 157 7 13 chr3 90001357 90001506 -69598277 + B1_Mur3 SINE Alu 1 148 -1 8 1271 183 42 0 0 chr3 90001522 90001546 -69598237 + (CAA)n Simple_repeat Simple_repeat 1 24 0 9 1271 1247 112 32 0 chr3 90002434 90002621 -69597162 + B2_Mm2 SINE B2 2 194 -1 1 1271 506 138 0 12 chr3 90002625 90002706 -69597077 + U6 snRNA snRNA 26 105 -2 1 1271 346 264 168 76 chr3 90002761 90002958 -69596825 + B4 SINE B4 67 281 -11 1 1271 676 222 7 34 chr3 90003016 90003165 -69596618 + B1F SINE Alu 5 149 0 1 1271 251 286 24 135 chr3 90003019 90003174 -69596609 - YREP_Mm Unknown Unknown -1504 308 172 1 1271 949 192 67 29 chr3 90003174 90003383 -69596400 + ID_B1 SINE B4 5 221 -3 1 1271 251 286 24 135 chr3 90003383 90003397 -69596386 - YREP_Mm Unknown Unknown -1641 171 158 1 1271 1385 80 5 21 chr3 90003403 90003594 -69596189 + B2_Mm1a SINE B2 2 189 -4 1 1271 767 171 57 16 chr3 90003992 90004168 -69595615 + B3 SINE B2 2 188 -7 3 1271 689 219 80 19 chr3 90004176 90004357 -69595426 + B3 SINE B2 3 195 0 1 1271 1153 88 0 0 chr3 90004358 90004505 -69595278 + B1_Mus1 SINE Alu 2 148 0 1 1271 207 105 0 26 chr3 90004509 90004548 -69595235 + (TAAA)n Simple_repeat Simple_repeat 3 40 0 1 1271 300 253 24 48 chr3 90004552 90004635 -69595148 + PB1D7 SINE Alu 40 120 0 2 1271 416 180 177 111 chr3 90004650 90004757 -69595026 - B2_Mm2 SINE B2 -1 194 77 2 1271 2558 139 45 41 chr3 90004757 90005221 -69594562 - RMER4A LTR ERVK 0 466 1 2 1271 416 180 177 111 chr3 90005221 90005294 -69594489 - B2_Mm2 SINE B2 -119 76 3 2 1271 217 364 0 105 chr3 90005369 90005455 -69594328 - ID4 SINE ID -1 82 6 2 1271 339 182 160 64 chr3 90005496 90005590 -69594193 - B1_Mm SINE Alu 0 120 18 2 1271 519 233 80 17 chr3 90005599 90005774 -69594009 - B2_Mm2 SINE B2 -8 187 2 2 1271 225 0 0 0 chr3 90006089 90006114 -69593669 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 2 1271 573 249 178 0 chr3 90006115 90006284 -69593499 - ID_B1 SINE B4 -19 205 7 2 1271 334 194 82 14 chr3 90006329 90006402 -69593381 - L1MEg LINE L1 -4125 1959 1882 2 1271 815 216 0 7 chr3 90006412 90006561 -69593222 - B1_Mur1 SINE Alu -1 148 1 2 1271 284 286 103 26 chr3 90006678 90006815 -69592968 + B1F SINE Alu 1 149 0 3 1271 248 236 18 0 chr3 90006909 90006964 -69592819 + GA-rich Low_complexity Low_complexity 1 56 0 3 1271 1417 94 16 0 chr3 90007237 90007428 -69592355 - B2_Mm2 SINE B2 -1 194 1 3 1271 1059 92 13 38 chr3 90007957 90008115 -69591668 + B2_Mm1t SINE B2 40 193 0 3 1271 730 306 38 29 chr3 90008159 90008368 -69591415 - ID_B1 SINE B4 -13 211 1 3 1271 314 248 158 25 chr3 90008372 90008492 -69591291 - ID_B1 SINE B4 0 224 89 3 1271 689 256 66 11 chr3 90008572 90008754 -69591029 + B3A SINE B2 1 192 -6 3 1271 358 142 0 5 chr3 90008833 90008898 -69590885 - B2_Mm2 SINE B2 -107 109 47 3 1271 1028 58 35 21 chr3 90008948 90009089 -69590694 - B2_Mm1t SINE B2 -14 179 37 3 1271 548 190 158 14 chr3 90009102 90009271 -69590512 - B3 SINE B2 -3 192 3 3 1271 1202 61 0 13 chr3 90009288 90009437 -69590346 - B1_Mus1 SINE Alu 0 148 2 4 1271 235 344 0 41 chr3 90009476 90009573 -69590210 + ID_B1 SINE B4 79 171 -53 4 1271 321 251 28 36 chr3 90009488 90009589 -69590194 + B1F SINE Alu 10 111 -6 4 1271 339 260 9 94 chr3 90009651 90009757 -69590026 + ID_B1 SINE B4 107 203 -21 4 1271 364 245 19 56 chr3 90009851 90009936 -69589847 - PB1D9 SINE Alu -1 119 38 4 1271 297 0 0 0 chr3 90009936 90009969 -69589814 + (TC)n Simple_repeat Simple_repeat 1 33 0 4 1271 364 245 19 56 chr3 90009969 90009991 -69589792 - PB1D9 SINE Alu -83 37 16 4 1271 320 286 111 10 chr3 90010252 90010351 -69589432 - RSINE1 SINE B4 -22 143 35 4 1271 365 264 43 11 chr3 90010313 90010345 -69589438 + ID SINE ID 47 81 -143 4 1271 472 116 0 0 chr3 90010345 90010414 -69589369 + B1_Mus2 SINE Alu 1 69 -78 4 1271 287 284 91 76 chr3 90010479 90010499 -69589284 - B4 SINE B4 -50 242 196 4 1271 392 207 214 8 chr3 90010499 90010616 -69589167 - B1_Mur1 SINE Alu -3 146 6 5 1271 287 284 91 76 chr3 90010616 90010677 -69589106 - B4 SINE B4 -50 195 42 4 1271 215 218 23 103 chr3 90010646 90010733 -69589050 - B4A SINE B4 -127 165 86 5 1271 1095 58 0 0 chr3 90010840 90010978 -69588805 - B1_Mm SINE Alu 0 147 10 5 1271 785 211 25 110 chr3 90010978 90011089 -69588694 - B4 SINE B4 0 222 5 5 1271 1068 102 0 0 chr3 90011435 90011582 -69588201 - B1_Mus2 SINE Alu 0 147 1 5 1271 961 120 107 6 chr3 90011592 90011760 -69588023 - B2_Mm2 SINE B2 -10 185 1 5 1271 324 187 16 47 chr3 90012691 90012772 -69587011 + B1_Mm SINE Alu 1 79 -68 5 1271 640 191 42 21 chr3 90012772 90012916 -69586867 + B1_Mur3 SINE Alu 3 149 0 5 1271 324 239 50 111 chr3 90012916 90012945 -69586838 + B1_Mm SINE Alu 80 103 -44 5 1271 469 296 70 38 chr3 90012935 90013093 -69586690 + ID_B1 SINE B4 13 175 -49 5 1271 225 233 109 65 chr3 90013018 90013110 -69586673 + B1F2 SINE Alu 19 114 -35 5 1271 1177 62 7 0 chr3 90013391 90013536 -69586247 - B1_Mus2 SINE Alu 0 147 2 6 1271 627 110 9 48 chr3 90013678 90013783 -69586000 + B2_Mm2 SINE B2 81 181 -14 6 1271 1138 105 52 12 chr3 90013802 90013975 -69585808 - B2_Mm2 SINE B2 -13 182 3 6 1271 749 77 0 28 chr3 90014448 90014555 -69585228 - B1_Mus2 SINE Alu 0 147 44 6 1271 256 212 59 59 chr3 90014491 90014576 -69585207 - RLTR25B LTR ERVK -519 509 425 6 1271 736 154 57 0 chr3 90014727 90014850 -69584933 + B3 SINE B2 1 130 -86 6 1271 273 221 82 130 chr3 90015004 90015150 -69584633 - MER2 DNA MER2_type -78 267 129 6 1271 978 83 13 27 chr3 90015250 90015399 -69584384 + B1_Mus2 SINE Alu 1 147 0 6 1271 309 314 31 55 chr3 90015468 90015596 -69584187 - RSINE1 SINE B4 -20 145 21 6 1271 229 301 23 57 chr3 90016107 90016195 -69583588 + ID_B1 SINE B4 43 127 -97 6 1271 441 261 63 72 chr3 90018012 90018235 -69581548 + ID_B1 SINE B4 4 224 0 7 1271 364 184 171 31 chr3 90018431 90018560 -69581223 + B1_Mur3 SINE Alu 2 148 -1 7 1271 24 0 0 0 chr3 90018676 90018700 -69581083 + AT_rich Low_complexity Low_complexity 1 24 0 7 1271 1160 82 0 0 chr3 90018800 90018946 -69580837 + B1_Mus2 SINE Alu 2 147 0 7 1271 804 132 0 8 chr3 90019076 90019206 -69580577 - B1_Mus2 SINE Alu -12 135 7 7 1271 394 248 87 87 chr3 90019206 90019226 -69580557 - B4 SINE B4 -78 214 65 7 1271 313 269 0 63 chr3 90019224 90019335 -69580448 + MT2B LTR ERVL 154 257 -344 7 1271 555 176 49 0 chr3 90019242 90019344 -69580439 + B1_Mus1 SINE Alu 6 112 -36 7 1271 992 149 78 16 chr3 90019355 90019546 -69580237 - URR1B DNA MER1_type -1 224 22 7 1271 326 326 40 40 chr3 90019586 90019685 -69580098 - RSINE1 SINE B4 -65 100 2 7 1271 738 221 0 45 chr3 90019725 90019881 -69579902 - B1_Mur2 SINE Alu 0 149 1 8 1271 1193 108 37 21 chr3 90019894 90020084 -69579699 - B2_Mm2 SINE B2 -2 193 1 8 1271 293 361 71 10 chr3 90020152 90020348 -69579435 - Lx8 LINE L1 -73 7400 7193 8 1271 1274 34 0 0 chr3 90020388 90020535 -69579248 - B1_Mus2 SINE Alu 0 147 1 8 1271 637 182 55 2 chr3 90020553 90020679 -69579104 - B1F2 SINE Alu -2 147 16 8 1271 325 272 174 72 chr3 90020851 90021212 -69578571 + RMER10A LTR ERVL 18 415 -27 8 1271 558 260 196 31 chr3 90021290 90021549 -69578234 - MTE2a LTR MaLR -2 377 72 8 1271 787 227 0 153 chr3 90021549 90021770 -69578013 + B3 SINE B2 1 190 -26 8 1271 312 27 0 0 chr3 90021770 90021807 -69577976 + (CA)n Simple_repeat Simple_repeat 2 38 0 8 1271 333 0 0 0 chr3 90021807 90021843 -69577940 + (GA)n Simple_repeat Simple_repeat 2 38 0 8 1271 787 227 0 153 chr3 90021843 90021875 -69577908 + B3 SINE B2 191 215 -1 8 1271 354 248 143 27 chr3 90021868 90021980 -69577803 - MTD LTR MaLR -294 125 1 9 1271 260 295 61 87 chr3 90021986 90022101 -69577682 - B1F2 SINE Alu -35 114 3 9 1271 311 260 0 72 chr3 90022208 90022291 -69577492 + ID4_ SINE ID 7 83 0 9 1271 324 301 25 58 chr3 90022319 90022439 -69577344 + PB1 SINE Alu 4 119 -8 9 1271 1847 134 98 39 chr3 90022524 90022723 -69577060 + RMER17C LTR ERVK 1 224 -186 9 1271 582 15 0 0 chr3 90022723 90022790 -69576993 + (TC)n Simple_repeat Simple_repeat 1 67 0 9 1271 1847 134 98 39 chr3 90022790 90022977 -69576806 + RMER17C LTR ERVK 225 409 -1 9 1271 23 0 0 0 chr3 90023011 90023034 -69576749 + AT_rich Low_complexity Low_complexity 1 23 0 9 1271 941 239 90 8 chr3 90023051 90023296 -69576487 + MTE2b LTR MaLR 1 265 -114 9 1271 1530 50 0 0 chr3 90023445 90023625 -69576158 + B2_Mm1a SINE B2 2 181 -12 9 1271 186 43 0 0 chr3 90023625 90023648 -69576135 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 9 1271 258 149 0 0 chr3 90023688 90023724 -69576059 + (T)n Simple_repeat Simple_repeat 1 36 0 1 1271 1200 34 0 45 chr3 90023724 90023878 -69575905 - B1_Mm SINE Alu 0 147 1 1 1271 258 149 0 0 chr3 90023878 90023888 -69575895 + (T)n Simple_repeat Simple_repeat 1 10 0 1 1271 676 203 121 30 chr3 90023893 90024091 -69575692 + B3 SINE B2 1 216 0 1 1271 272 309 85 54 chr3 90024098 90024228 -69575555 + B1F SINE Alu 1 134 -15 1 1271 369 109 0 0 chr3 90025639 90025694 -69574089 + (TCCC)n Simple_repeat Simple_repeat 3 57 0 1 1271 205 302 0 0 chr3 90025856 90025909 -69573874 + G-rich Low_complexity Low_complexity 5 57 0 1 1271 189 0 0 0 chr3 90026343 90026364 -69573419 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 1 1271 316 317 154 0 chr3 90026366 90026489 -69573294 - ID_B1 SINE B4 -13 211 70 1 1271 720 218 8 2 chr3 90026763 90026911 -69572872 + B1_Mur4 SINE Alu 3 150 0 1 1271 389 322 37 58 chr3 90027050 90027238 -69572545 + MIRb SINE MIR 49 232 -36 1 1271 917 183 105 0 chr3 90027853 90028044 -69571739 - B3 SINE B2 -5 211 1 1 1271 386 66 0 32 chr3 90028057 90028120 -69571663 + (TTTG)n Simple_repeat Simple_repeat 1 61 0 1 1271 1122 67 0 0 chr3 90028120 90028255 -69571528 - B1_Mus1 SINE Alu -13 135 1 1 1271 570 205 0 67 chr3 90028258 90028378 -69571405 - B1F SINE Alu 0 149 38 1 1271 246 294 0 42 chr3 90028320 90028391 -69571392 - 4.5SRNA scRNA scRNA -4 90 23 1 1271 275 210 48 0 chr3 90028900 90028962 -69570821 + ID_B1 SINE B4 98 162 -62 1 1271 919 76 0 0 chr3 90029000 90029119 -69570664 - B2_Mm1t SINE B2 -24 169 51 1 1271 789 146 0 15 chr3 90029135 90029267 -69570516 + B1_Mus2 SINE Alu 13 142 -5 1 1271 210 299 8 57 chr3 90029601 90029725 -69570058 + GA-rich Low_complexity Low_complexity 4 121 0 1 1271 1206 68 0 0 chr3 90030458 90030604 -69569179 + B1_Mm SINE Alu 2 147 0 1 1271 249 108 0 0 chr3 90030604 90030641 -69569142 + (GAAA)n Simple_repeat Simple_repeat 2 38 0 1 1271 1203 61 0 20 chr3 90030880 90031030 -69568753 + B1_Mus1 SINE Alu 2 148 0 1 1271 297 140 0 0 chr3 90031031 90031088 -69568695 + (A)n Simple_repeat Simple_repeat 1 57 0 1 1271 1218 61 0 0 chr3 90031215 90031362 -69568421 - B1_Mus1 SINE Alu 0 148 2 1 1271 631 183 26 9 chr3 90031447 90031563 -69568220 + PB1D9 SINE Alu 2 119 -1 1 1271 281 268 181 12 chr3 90031606 90031689 -69568094 - RSINE1 SINE B4 -57 108 12 1 1271 1844 206 16 21 chr3 90031723 90031760 -69568023 - ORR1D1 LTR MaLR 0 374 342 1 1271 2341 134 239 11 chr3 90031760 90032236 -69567547 + RMER4B LTR ERVK 1 585 0 1 1271 1844 206 16 21 chr3 90032236 90032574 -69567209 - ORR1D1 LTR MaLR -33 341 1 1 1271 348 211 84 0 chr3 90032574 90032644 -69567139 - PB1D7 SINE Alu -16 104 29 1 1271 212 295 22 124 chr3 90032979 90033068 -69566715 + B4A SINE B4 73 152 -140 1 1271 257 208 86 49 chr3 90033102 90033183 -69566600 + RSINE1 SINE B4 82 165 0 1 1271 526 118 11 11 chr3 90033524 90033618 -69566165 + (TCCC)n Simple_repeat Simple_repeat 1 94 0 1 1271 815 181 0 8 chr3 90033619 90033753 -69566030 - B1_Mus1 SINE Alu -15 133 1 1 1271 229 316 52 13 chr3 90033862 90033939 -69565844 + PB1D9 SINE Alu 32 111 -9 1 1271 852 172 7 0 chr3 90033988 90034133 -69565650 - B1_Mus2 SINE Alu 0 147 2 1 1271 404 302 30 90 chr3 90034167 90034191 -69565592 - B2_Mm2 SINE B2 -3 192 170 1 1271 1246 54 0 0 chr3 90034191 90034338 -69565445 + B1_Mus1 SINE Alu 2 148 0 1 1271 404 302 30 90 chr3 90034338 90034349 -69565434 - B2_Mm2 SINE B2 -26 169 161 1 1271 264 30 0 0 chr3 90034349 90034382 -69565401 + (TG)n Simple_repeat Simple_repeat 1 33 0 1 1271 701 244 56 3 chr3 90034382 90034545 -69565238 - B3 SINE B2 -46 170 5 1 1271 283 96 39 0 chr3 90034554 90034606 -69565177 + (TTTC)n Simple_repeat Simple_repeat 3 56 0 1 1271 485 219 109 72 chr3 90034608 90034746 -69565037 - B1_Mur1 SINE Alu -1 148 6 1 1271 435 162 305 0 chr3 90034830 90034935 -69564848 + B1_Mur3 SINE Alu 11 147 -2 1 1271 1073 65 0 28 chr3 90036483 90036625 -69563158 + B1_Mus1 SINE Alu 2 139 -9 1 1271 297 0 0 0 chr3 90036625 90036658 -69563125 + (CAAAC)n Simple_repeat Simple_repeat 2 34 0 1 1271 747 242 38 38 chr3 90036738 90036948 -69562835 - B3 SINE B2 -5 211 2 1 1271 476 125 0 59 chr3 90036960 90037045 -69562738 - B1F1 SINE Alu -1 148 69 1 1271 250 299 268 0 chr3 90037078 90037175 -69562608 - RSINE1 SINE B4 -40 125 3 1 1271 24 23 0 43 chr3 90037245 90037265 -69562518 + AT_rich Low_complexity Low_complexity 1 20 0 1 1271 3008 67 0 10 chr3 90037265 90037655 -69562128 - L1_Mus1 LINE L1 0 6567 6182 1 1271 24 23 0 43 chr3 90037655 90037680 -69562103 + AT_rich Low_complexity Low_complexity 1 24 0 1 1271 402 272 85 39 chr3 90038135 90038265 -69561518 + B1_Mur1 SINE Alu 11 146 -3 1 1271 382 254 33 145 chr3 90038273 90038343 -69561440 + B1_Mm SINE Alu 1 64 -83 1 1271 1079 33 270 0 chr3 90038343 90038495 -69561288 - B2_Mm1t SINE B2 0 193 1 1 1271 382 254 33 145 chr3 90038495 90038576 -69561207 + B1_Mm SINE Alu 65 135 -12 1 1271 543 288 75 25 chr3 90038524 90038684 -69561099 + B3 SINE B2 11 178 -38 1 1271 285 51 0 0 chr3 90038717 90038756 -69561027 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 1271 442 244 12 0 chr3 90038852 90038938 -69560845 + PB1D10 SINE Alu 1 87 -30 1 1271 797 171 28 21 chr3 90038952 90039095 -69560688 - B1_Mur4 SINE Alu -1 149 6 1 1271 368 234 42 75 chr3 90039614 90039734 -69560049 + PB1D10 SINE Alu 1 116 -1 1 1271 749 199 0 0 chr3 90039792 90039933 -69559850 + B1_Mur1 SINE Alu 3 143 -6 1 1271 1176 61 0 7 chr3 90039942 90040090 -69559693 + B1_Mm SINE Alu 1 147 0 1 1271 24 0 0 0 chr3 90040102 90040126 -69559657 + AT_rich Low_complexity Low_complexity 1 24 0 1 1271 551 278 55 88 chr3 90040126 90040165 -69559618 + B3 SINE B2 2 30 -186 1 1271 1292 80 108 0 chr3 90040165 90040341 -69559442 + B2_Mm2 SINE B2 1 195 0 1 1271 551 278 55 88 chr3 90040341 90040518 -69559265 + B3 SINE B2 31 211 -5 1 1271 397 314 256 0 chr3 90040566 90040703 -69559080 - B3 SINE B2 -42 174 3 1 1271 670 309 62 20 chr3 90040837 90041032 -69558751 - B3 SINE B2 0 216 14 1 1271 283 208 299 51 chr3 90041102 90041259 -69558524 + B3A SINE B2 3 198 0 1 1271 809 150 288 18 chr3 90043383 90043553 -69556230 - B3 SINE B2 0 216 1 1 1271 470 308 45 0 chr3 90043681 90043837 -69555946 - RSINE1 SINE B4 0 165 3 1 1271 963 149 0 0 chr3 90043897 90044038 -69555745 - B1_Mus2 SINE Alu -6 141 1 1 1271 868 145 250 0 chr3 90044041 90044213 -69555570 - B3 SINE B2 0 216 2 1 1271 336 319 0 0 chr3 90044217 90044336 -69555447 - PB1D7 SINE Alu -1 119 1 1 1271 1150 50 0 0 chr3 90044369 90044508 -69555275 + B1_Mus1 SINE Alu 2 140 -8 1 1271 192 40 0 0 chr3 90044509 90044534 -69555249 + (CAAA)n Simple_repeat Simple_repeat 4 28 0 1 1271 489 271 46 53 chr3 90044554 90044706 -69555077 + RSINE1 SINE B4 2 152 -13 1 1271 366 309 129 53 chr3 90044779 90045042 -69554741 - B4A SINE B4 -9 283 1 1 1272 344 289 41 10 chr3 90048052 90048150 -69551633 + PB1D10 SINE Alu 7 107 -10 1 1272 647 135 99 0 chr3 90048150 90048261 -69551522 + B1_Mus2 SINE Alu 25 146 -1 1 1272 326 268 60 24 chr3 90048725 90048809 -69550974 - RSINE1 SINE B4 -38 127 41 1 1272 407 260 31 20 chr3 90048830 90048935 -69550848 - PB1D7 SINE Alu -21 127 28 1 1272 1143 43 22 0 chr3 90049152 90049291 -69550492 + B1_Mm SINE Alu 1 142 -5 1 1272 207 100 0 0 chr3 90049294 90049324 -69550459 + (A)n Simple_repeat Simple_repeat 1 30 0 1 1272 206 121 0 0 chr3 90049449 90049482 -69550301 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 1 1272 274 188 0 0 chr3 90049488 90049536 -69550247 + B1_Mur3 SINE Alu 89 136 -13 1 1272 233 57 29 0 chr3 90049612 90049647 -69550136 + (GAAA)n Simple_repeat Simple_repeat 2 37 0 1 1272 650 24 24 0 chr3 90049974 90050057 -69549726 + (TTTC)n Simple_repeat Simple_repeat 3 87 0 1 1272 1053 61 68 0 chr3 90050059 90050191 -69549592 - B1_Mus2 SINE Alu -6 141 1 1 1272 347 288 0 36 chr3 90050200 90050283 -69549500 - B3 SINE B2 -136 80 1 1 1272 338 357 46 23 chr3 90050302 90050477 -69549306 - B3A SINE B2 -6 192 14 1 1272 1336 142 101 5 chr3 90050654 90050873 -69548910 + MERVL_2A-int LTR ERVL 4289 4528 -1233 1 1272 240 139 0 0 chr3 90050883 90050919 -69548864 - PB1D10 SINE Alu -61 56 21 1 1272 26 0 0 0 chr3 90050976 90051002 -69548781 + AT_rich Low_complexity Low_complexity 1 26 0 1 1272 2749 37 0 0 chr3 90051002 90051324 -69548459 + L1Md_F2 LINE L1 6257 6578 -4 1 1272 400 115 0 60 chr3 90051315 90051398 -69548385 - L1Md_F3 LINE L1 -6 6578 6501 1 1272 795 139 64 28 chr3 90051488 90051629 -69548154 - B1_Mur4 SINE Alu 0 150 5 1 1272 217 209 0 0 chr3 90052082 90052125 -69547658 + G-rich Low_complexity Low_complexity 1 43 0 1 1272 202 195 0 0 chr3 90053123 90053164 -69546619 + G-rich Low_complexity Low_complexity 1 41 0 1 1272 375 196 175 0 chr3 90053445 90053542 -69546241 + B1_Mur4 SINE Alu 37 150 0 1 1272 1294 20 0 0 chr3 90053855 90054002 -69545781 - B1_Mus2 SINE Alu 0 147 1 1 1272 512 202 116 0 chr3 90054007 90054136 -69545647 - B1F2 SINE Alu -1 148 5 1 1272 22 0 0 0 chr3 90054162 90054184 -69545599 + AT_rich Low_complexity Low_complexity 1 22 0 1 1272 1231 54 0 0 chr3 90054184 90054331 -69545452 - B1_Mus1 SINE Alu 0 148 2 2 1272 387 0 0 0 chr3 90054494 90054537 -69545246 + (TG)n Simple_repeat Simple_repeat 1 43 0 2 1272 210 322 111 0 chr3 90054600 90054690 -69545093 - PB1D10 SINE Alu -5 112 13 2 1272 489 254 17 9 chr3 90054814 90054929 -69544854 + B1F SINE Alu 24 139 -10 2 1272 617 279 49 64 chr3 90055203 90055406 -69544377 + MER20 DNA MER1_type 10 209 -10 2 1272 792 136 0 70 chr3 90056812 90056954 -69542829 - B1_Mur4 SINE Alu -18 132 1 2 1272 560 166 211 3 chr3 90057030 90057157 -69542626 - B1_Mm SINE Alu 0 148 1 2 1272 342 0 0 0 chr3 90057553 90057591 -69542192 + (TG)n Simple_repeat Simple_repeat 1 38 0 2 1272 180 0 0 0 chr3 90057618 90057638 -69542145 + (TG)n Simple_repeat Simple_repeat 1 20 0 2 1272 198 0 0 0 chr3 90057638 90057659 -69542124 + (GA)n Simple_repeat Simple_repeat 1 22 0 2 1272 453 117 15 30 chr3 90057664 90057796 -69541987 + (TG)n Simple_repeat Simple_repeat 1 130 0 2 1272 209 301 0 24 chr3 90058260 90058345 -69541438 + G-rich Low_complexity Low_complexity 4 86 0 2 1272 378 0 0 0 chr3 90059685 90059727 -69540056 + (TG)n Simple_repeat Simple_repeat 2 43 0 2 1272 237 132 0 0 chr3 90061738 90061776 -69538007 + (TTTA)n Simple_repeat Simple_repeat 1 38 0 2 1272 465 208 99 33 chr3 90061777 90061912 -69537871 - B1_Mur4 SINE Alu -2 148 1 2 1272 213 301 107 66 chr3 90061816 90061937 -69537846 - B4 SINE B4 -99 193 68 2 1272 367 368 14 27 chr3 90061931 90062079 -69537704 - B1F2 SINE Alu 0 149 4 2 1272 245 312 0 0 chr3 90062027 90062091 -69537692 - B4 SINE B4 -152 140 77 2 1272 456 51 0 0 chr3 90062192 90062251 -69537532 + (TG)n Simple_repeat Simple_repeat 2 60 0 2 1272 219 286 0 37 chr3 90065038 90065147 -69534636 + CT-rich Low_complexity Low_complexity 3 107 0 2 1272 288 324 39 0 chr3 90065152 90065254 -69534529 + MIR SINE MIR 18 123 -139 2 1272 597 258 8 8 chr3 90065556 90065689 -69534094 - ID_B1 SINE B4 -12 212 80 2 1272 213 283 0 19 chr3 90066209 90066263 -69533520 - B1F2 SINE Alu -96 53 1 2 1272 190 264 110 14 chr3 90066998 90067071 -69532712 - MIRm SINE MIR -43 233 154 2 1272 34 24 0 0 chr3 90067992 90068033 -69531750 + AT_rich Low_complexity Low_complexity 1 41 0 2 1272 208 220 0 0 chr3 90069403 90069453 -69530330 + (CCCG)n Simple_repeat Simple_repeat 4 53 0 2 1272 253 156 30 45 chr3 90069473 90069540 -69530243 + (CGGG)n Simple_repeat Simple_repeat 2 67 0 2 1272 200 157 94 38 chr3 90071805 90071858 -69527925 + MIRm SINE MIR 99 154 -122 2 1272 295 301 48 0 chr3 90071833 90071916 -69527867 + MIRb SINE MIR 130 216 -52 2 1272 248 197 106 0 chr3 90073440 90073506 -69526277 + LTR89 LTR ERVL? 4 76 -803 2 1272 234 174 0 0 chr3 90073631 90073677 -69526106 + (TTCA)n Simple_repeat Simple_repeat 3 48 0 2 1272 321 155 30 9 chr3 90073725 90073805 -69525978 - B1F1 SINE Alu -8 141 60 2 1272 183 254 119 0 chr3 90074652 90074711 -69525072 + L2b LINE L2 3104 3169 -206 2 1272 396 0 0 0 chr3 90077100 90077144 -69522639 + (TAAAA)n Simple_repeat Simple_repeat 4 47 0 2 1272 917 120 49 7 chr3 90077150 90077293 -69522490 + B1_Mur2 SINE Alu 1 149 0 2 1272 190 70 68 23 chr3 90077296 90077340 -69522443 + A-rich Low_complexity Low_complexity 2 47 0 2 1272 374 214 35 35 chr3 90077580 90077667 -69522116 + PB1D10 SINE Alu 31 117 0 2 1272 186 388 91 23 chr3 90078565 90078747 -69521036 - MIR SINE MIR -28 234 38 2 1272 225 0 0 0 chr3 90078747 90078772 -69521011 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 2 1272 1059 80 7 0 chr3 90078772 90078909 -69520874 - B1_Mus2 SINE Alu -9 138 1 2 1272 186 388 91 23 chr3 90078909 90078944 -69520839 - MIR SINE MIR -225 37 3 2 1272 738 145 113 0 chr3 90079033 90079157 -69520626 + B1_Mur1 SINE Alu 5 142 -7 2 1272 339 65 0 0 chr3 90079483 90079529 -69520254 + (CAG)n Simple_repeat Simple_repeat 3 48 0 2 1272 404 315 55 8 chr3 90079597 90079725 -69520058 + B1F SINE Alu 3 136 -13 2 1272 1230 41 7 0 chr3 90079735 90079881 -69519902 - B1_Mm SINE Alu 0 147 1 2 1272 1196 164 45 5 chr3 90080496 90080698 -69519085 - B3 SINE B2 -4 212 3 2 1272 187 250 83 0 chr3 90082602 90082674 -69517109 + MIRm SINE MIR 108 185 -91 2 1272 256 353 24 0 chr3 90082717 90082802 -69516981 - L2c LINE L2 -5 3382 3296 2 1272 667 222 29 29 chr3 90082831 90082970 -69516813 + B1_Mur1 SINE Alu 5 143 -6 2 1272 657 263 102 10 chr3 90085075 90085107 -69514676 - B3 SINE B2 0 216 185 2 1272 365 58 19 0 chr3 90085107 90085159 -69514624 + (TG)n Simple_repeat Simple_repeat 2 54 0 2 1272 657 263 102 10 chr3 90085159 90085322 -69514461 - B3 SINE B2 -32 184 4 2 1272 775 216 62 34 chr3 90085346 90085523 -69514260 - B3A SINE B2 -16 182 1 2 1272 1136 75 7 0 chr3 90085676 90085822 -69513961 + B1_Mus2 SINE Alu 1 147 0 2 1272 481 194 143 16 chr3 90085852 90085978 -69513805 + B1_Mur1 SINE Alu 2 143 -6 2 1272 781 194 0 7 chr3 90086107 90086242 -69513541 + B1_Mur4 SINE Alu 2 135 -15 2 1272 372 22 0 0 chr3 90086324 90086369 -69513414 + (TG)n Simple_repeat Simple_repeat 2 46 0 2 1272 272 277 0 15 chr3 90086474 90086540 -69513243 - ID4 SINE ID -14 69 5 2 1272 345 136 0 0 chr3 90086540 90086606 -69513177 + (T)n Simple_repeat Simple_repeat 1 66 0 2 1272 933 88 81 0 chr3 90086607 90086743 -69513040 - B1_Mus2 SINE Alu 0 147 1 2 1272 389 276 31 0 chr3 90086882 90086980 -69512803 - ID_B1 SINE B4 -21 203 103 2 1272 609 207 82 0 chr3 90087229 90087364 -69512419 - B1_Mur4 SINE Alu -1 149 4 2 1272 227 245 114 105 chr3 90087404 90087518 -69512265 + PB1D7 SINE Alu 6 120 0 2 1272 337 270 14 173 chr3 90087621 90087664 -69512119 + B3 SINE B2 2 46 -170 2 1272 1282 27 0 0 chr3 90087664 90087810 -69511973 + B1_Mus2 SINE Alu 2 147 0 2 1272 337 270 14 173 chr3 90087810 90087905 -69511878 + B3 SINE B2 47 118 -98 2 1272 33 25 0 0 chr3 90087921 90087961 -69511822 + AT_rich Low_complexity Low_complexity 1 40 0 2 1272 752 249 17 34 chr3 90087977 90088152 -69511631 + B3A SINE B2 9 180 -18 2 1272 1002 153 61 22 chr3 90088174 90088354 -69511429 - B2_Mm2 SINE B2 -8 187 1 2 1272 1369 81 37 31 chr3 90088361 90088552 -69511231 - B2_Mm2 SINE B2 -3 192 1 2 1272 21 36 0 0 chr3 90088569 90088597 -69511186 + AT_rich Low_complexity Low_complexity 1 28 0 2 1272 593 172 0 0 chr3 90088612 90088705 -69511078 + B1F2 SINE Alu 55 147 -2 2 1272 888 170 245 82 chr3 90088737 90088859 -69510924 + Lx7 LINE L1 7240 7354 -342 2 1272 895 192 0 7 chr3 90088859 90089006 -69510777 - B1_Mus2 SINE Alu -1 146 1 2 1272 888 170 245 82 chr3 90089006 90089262 -69510521 + Lx7 LINE L1 7355 7680 -16 2 1272 978 113 0 14 chr3 90089641 90089784 -69509999 - B1_Mur4 SINE Alu -8 142 2 2 1272 1767 116 207 111 chr3 90089819 90090062 -69509721 - RMER4A LTR ERVK 0 466 226 2 1272 1312 81 37 16 chr3 90090062 90090251 -69509532 - B2_Mm2 SINE B2 -1 194 2 2 1272 1767 116 207 111 chr3 90090251 90090383 -69509400 - RMER4A LTR ERVK -241 225 111 2 1272 1347 96 37 0 chr3 90090383 90090571 -69509212 - B2_Mm2 SINE B2 0 195 1 2 1272 1767 116 207 111 chr3 90090571 90090619 -69509164 - RMER4A LTR ERVK -356 110 1 2 1272 693 206 20 7 chr3 90090620 90090767 -69509016 - MurERV4-int LTR ERVK -2 5258 5110 2 1272 3997 181 83 41 chr3 90090736 90091529 -69508254 - MurERV4-int LTR ERVK -3135 2125 1273 2 1272 1162 68 0 20 chr3 90091529 90091679 -69508104 - B1_Mm SINE Alu 0 147 1 2 1272 3997 181 83 41 chr3 90091679 90091858 -69507925 - MurERV4-int LTR ERVK -3988 1272 1113 2 1272 1623 138 22 0 chr3 90091851 90092119 -69507664 + MurERV4-int LTR ERVK 754 1027 -4233 2 1272 1107 134 121 4 chr3 90092123 90092355 -69507428 - MurERV4-int LTR ERVK -4663 597 339 2 1272 1200 95 0 0 chr3 90092357 90092515 -69507268 - B2_Mm2 SINE B2 -28 167 10 2 1272 1011 64 4 208 chr3 90092515 90092593 -69507190 + L1_Mus1 LINE L1 6380 6435 -132 2 1272 1187 82 0 0 chr3 90092593 90092739 -69507044 - B1_Mm SINE Alu 0 147 2 2 1272 1011 64 4 208 chr3 90092739 90092896 -69506887 + L1_Mus1 LINE L1 6436 6567 0 2 1272 1408 95 5 0 chr3 90092912 90093102 -69506681 + B2_Mm1t SINE B2 2 192 -1 2 1272 1388 65 21 16 chr3 90093105 90093294 -69506489 + B2_Mm1t SINE B2 4 193 0 2 1272 1186 62 7 0 chr3 90093300 90093446 -69506337 + B1_Mus2 SINE Alu 1 147 0 2 1272 297 0 0 0 chr3 90093446 90093479 -69506304 + (A)n Simple_repeat Simple_repeat 1 33 0 2 1272 1087 157 71 5 chr3 90093492 90093690 -69506093 - MurERV4-int LTR ERVK -4943 317 107 2 1272 1188 68 0 7 chr3 90093707 90093855 -69505928 - B1_Mus1 SINE Alu 0 148 2 2 1272 253 61 0 0 chr3 90093916 90093949 -69505834 + B1_Mus1 SINE Alu 3 35 -113 2 1272 1917 154 0 59 chr3 90093948 90094287 -69505496 - RMER4A LTR ERVK -147 319 1 2 1272 312 26 0 0 chr3 90094357 90094396 -69505387 + B1_Mur4 SINE Alu 2 40 -110 2 1272 728 182 128 113 chr3 90094639 90094843 -69504940 - B3 SINE B2 -8 208 2 2 1272 186 366 40 80 chr3 90094888 90095063 -69504720 - MIR SINE MIR -62 200 33 2 1272 417 240 0 0 chr3 90095152 90095227 -69504556 + B1F SINE Alu 3 77 -72 2 1272 1020 131 14 0 chr3 90095232 90095377 -69504406 - B1_Mus2 SINE Alu 0 147 1 2 1272 1036 52 7 22 chr3 90095473 90095611 -69504172 - B1_Mm SINE Alu -1 146 11 2 1272 434 200 43 95 chr3 90095510 90095626 -69504157 - MT2B LTR ERVL -337 264 155 2 1272 406 245 240 19 chr3 90095660 90095814 -69503969 - B3A SINE B2 -10 188 1 2 1272 186 286 97 21 chr3 90095957 90096050 -69503733 + MIRb SINE MIR 32 131 -137 2 1272 274 280 203 0 chr3 90096055 90096173 -69503610 + MIR SINE MIR 49 190 -72 2 1272 222 128 0 0 chr3 90097119 90097158 -69502625 + (CCG)n Simple_repeat Simple_repeat 2 40 0 2 1272 183 139 0 0 chr3 90097208 90097244 -69502539 + (CCCCCG)n Simple_repeat Simple_repeat 5 40 0 2 1272 183 146 0 0 chr3 90097365 90097406 -69502377 + (CCCG)n Simple_repeat Simple_repeat 1 41 0 2 1272 232 298 0 23 chr3 90097406 90097492 -69502291 + G-rich Low_complexity Low_complexity 3 86 0 2 1272 242 224 42 33 chr3 90097492 90097612 -69502171 + (CCCG)n Simple_repeat Simple_repeat 2 122 0 3 1272 769 175 24 0 chr3 90098937 90099063 -69500720 + B3 SINE B2 1 129 -87 3 1272 1242 41 0 7 chr3 90099471 90099618 -69500165 - B1_Mus2 SINE Alu -1 146 1 3 1272 476 244 48 8 chr3 90099963 90100087 -69499696 + B1F SINE Alu 17 145 -4 3 1272 273 231 141 0 chr3 90100127 90100205 -69499578 + ID_B1 SINE B4 136 224 0 3 1272 546 77 26 0 chr3 90100308 90100386 -69499397 + PB1D9 SINE Alu 41 120 0 3 1272 741 185 14 62 chr3 90100406 90100550 -69499233 + B1_Mur4 SINE Alu 1 137 -13 3 1272 1438 70 54 0 chr3 90100646 90100831 -69498952 - B2_Mm2 SINE B2 0 195 1 3 1272 669 236 0 7 chr3 90100838 90100983 -69498800 - B1_Mur3 SINE Alu -5 144 1 3 1272 1251 97 48 11 chr3 90101728 90101916 -69497867 - B2_Mm2 SINE B2 0 195 1 3 1272 514 170 140 0 chr3 90102083 90102183 -69497600 - PB1D9 SINE Alu -6 114 1 3 1272 337 303 99 20 chr3 90102265 90102366 -69497417 - PB1D7 SINE Alu -6 114 6 3 1272 295 296 0 0 chr3 90102392 90102473 -69497310 - PB1D10 SINE Alu -5 112 32 3 1272 586 158 139 0 chr3 90102526 90102627 -69497156 - B1_Mur2 SINE Alu -9 140 26 3 1272 186 40 0 0 chr3 90102650 90102663 -69497120 + (TA)n Simple_repeat Simple_repeat 1 13 0 3 1272 360 64 0 0 chr3 90102663 90102710 -69497073 + (TG)n Simple_repeat Simple_repeat 2 48 0 3 1272 186 40 0 0 chr3 90102710 90102721 -69497062 + (TA)n Simple_repeat Simple_repeat 2 12 0 3 1272 310 197 76 38 chr3 90103124 90103203 -69496580 - BC1_Mm scRNA scRNA -61 91 10 3 1272 313 20 40 20 chr3 90103216 90103266 -69496517 + (TTTG)n Simple_repeat Simple_repeat 2 52 0 3 1272 320 138 25 0 chr3 90103266 90103321 -69496462 - B1_Mm SINE Alu -8 139 51 3 1272 382 289 10 0 chr3 90103331 90103428 -69496355 - ID_B1 SINE B4 -21 203 106 3 1272 563 189 321 36 chr3 90103527 90103695 -69496088 - B3 SINE B2 0 216 1 3 1272 323 274 176 0 chr3 90103704 90103806 -69495977 - PB1D7 SINE Alu 0 120 1 3 1272 585 240 198 16 chr3 90103837 90104019 -69495764 - B3 SINE B2 0 216 2 3 1272 234 192 0 0 chr3 90104030 90104082 -69495701 + (CGTG)n Simple_repeat Simple_repeat 3 54 0 3 1272 228 111 0 0 chr3 90104108 90104144 -69495639 + (TTCA)n Simple_repeat Simple_repeat 3 38 0 3 1272 554 290 15 0 chr3 90104144 90104275 -69495508 - ID_B1 SINE B4 -12 212 80 3 1272 613 174 111 22 chr3 90104388 90104523 -69495260 + B1_Mus1 SINE Alu 2 148 0 3 1272 699 93 17 61 chr3 90104532 90104647 -69495136 + PB1D9 SINE Alu 1 110 -10 3 1272 1222 61 7 0 chr3 90104952 90105099 -69494684 + B1_Mus1 SINE Alu 1 148 0 3 1272 553 281 58 68 chr3 90105110 90105301 -69494482 - B3A SINE B2 -9 189 1 3 1272 1161 76 32 0 chr3 90105320 90105478 -69494305 - B2_Mm2 SINE B2 -4 191 29 3 1272 686 199 56 35 chr3 90105497 90105688 -69494095 + B3 SINE B2 4 191 -4 3 1272 234 209 130 29 chr3 90105944 90106013 -69493770 - Lx8 LINE L1 -4 7469 7394 3 1272 380 216 7 30 chr3 90106013 90106109 -69493674 - PB1D10 SINE Alu 0 149 42 3 1272 1072 84 21 0 chr3 90106109 90106251 -69493532 - B1_Mus1 SINE Alu -2 146 2 3 1272 328 275 99 71 chr3 90106251 90106304 -69493479 - B1F SINE Alu -97 52 5 3 1272 755 186 0 3 chr3 90106442 90106461 -69493322 - B1_Mur4 SINE Alu -8 142 18 3 1272 262 331 41 102 chr3 90106461 90106474 -69493309 - MT2B LTR ERVL -323 278 182 3 1272 295 312 36 101 chr3 90106474 90106570 -69493213 - B4 SINE B4 -94 198 103 3 1272 1106 88 0 7 chr3 90106570 90106719 -69493064 + B1_Mus1 SINE Alu 1 148 0 3 1272 604 259 0 48 chr3 90106719 90106736 -69493047 - B1F2 SINE Alu -132 17 3 3 1272 295 312 36 101 chr3 90106736 90106761 -69493022 - B4 SINE B4 -190 102 69 3 1272 262 331 41 102 chr3 90106761 90106875 -69492908 - MT2B LTR ERVL -420 181 29 3 1272 354 320 120 0 chr3 90106860 90106985 -69492798 - B1F SINE Alu -8 141 2 3 1272 385 343 29 15 chr3 90107028 90107164 -69492619 - B1F SINE Alu 0 149 12 3 1272 1155 69 32 75 chr3 90107182 90107201 -69492582 - B2_Mm2 SINE B2 0 195 179 3 1272 1198 99 55 6 chr3 90107201 90107383 -69492400 - B2_Mm1t SINE B2 -1 192 2 3 1272 1155 69 32 75 chr3 90107383 90107551 -69492232 - B2_Mm2 SINE B2 -17 178 16 3 1272 1046 206 20 15 chr3 90107955 90108157 -69491626 + B3 SINE B2 14 216 0 3 1272 1334 57 68 0 chr3 90108960 90108976 -69490807 - B2_Mm1t SINE B2 -4 189 174 3 1272 243 0 0 0 chr3 90108976 90109003 -69490780 + (TTTA)n Simple_repeat Simple_repeat 3 29 0 3 1272 1334 57 68 0 chr3 90109003 90109162 -69490621 - B2_Mm1t SINE B2 -20 173 3 3 1272 1368 97 5 0 chr3 90109166 90109352 -69490431 - B2_Mm1a SINE B2 -5 188 2 3 1272 612 198 127 22 chr3 90110903 90111037 -69488746 - B1_Mus1 SINE Alu 0 148 1 3 1272 221 292 195 0 chr3 90111037 90111150 -69488633 + MIRc SINE MIR 103 237 -31 3 1272 692 322 27 5 chr3 90111185 90111369 -69488414 + B3A SINE B2 1 188 -10 3 1272 359 222 0 77 chr3 90111484 90111562 -69488221 - PB1D9 SINE Alu -48 72 1 3 1272 256 328 0 43 chr3 90111507 90111577 -69488206 - ID_B1 SINE B4 -88 136 70 3 1272 189 0 0 0 chr3 90111626 90111647 -69488136 + (TTTAA)n Simple_repeat Simple_repeat 3 23 0 3 1272 1718 11 0 0 chr3 90111647 90111832 -69487951 - B2_Mm1a SINE B2 -8 185 1 3 1272 465 255 100 20 chr3 90111883 90111983 -69487800 - RSINE1 SINE B4 -29 136 29 3 1272 237 316 30 30 chr3 90111973 90112074 -69487709 - PB1D10 SINE Alu -16 101 1 3 1272 443 303 88 17 chr3 90112367 90112548 -69487235 + B3A SINE B2 1 194 -4 3 1272 1185 48 0 7 chr3 90112592 90112740 -69487043 - B1_Mus2 SINE Alu 0 147 1 3 1272 678 234 28 0 chr3 90112743 90112888 -69486895 - B1_Mur4 SINE Alu 0 150 2 3 1272 384 286 0 43 chr3 90112909 90113026 -69486757 + PB1D7 SINE Alu 4 115 -5 3 1272 183 114 0 0 chr3 90113069 90113104 -69486679 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 3 1272 344 242 18 100 chr3 90113118 90113228 -69486555 - B2_Mm2 SINE B2 -93 102 2 3 1272 488 285 101 7 chr3 90113278 90113416 -69486367 - ID_B1 SINE B4 -4 220 70 3 1272 333 0 0 0 chr3 90113473 90113510 -69486273 + (TC)n Simple_repeat Simple_repeat 2 38 0 3 1272 405 0 0 0 chr3 90113510 90113554 -69486229 + (TG)n Simple_repeat Simple_repeat 2 46 0 3 1272 387 252 134 9 chr3 90113736 90113848 -69485935 - B1_Mur2 SINE Alu -20 129 4 3 1272 591 278 27 70 chr3 90113968 90114154 -69485629 - B4A SINE B4 -27 265 88 3 1272 511 260 122 14 chr3 90114302 90114450 -69485333 - ID_B1 SINE B4 -59 165 2 3 1272 613 202 0 32 chr3 90114804 90114927 -69484856 - PB1D9 SINE Alu 0 120 2 3 1272 957 139 30 0 chr3 90115099 90115264 -69484519 + URR1A DNA MER1_type 57 226 0 3 1272 1178 55 0 7 chr3 90115334 90115481 -69484302 - B1_Mus1 SINE Alu 0 148 3 3 1272 1463 49 16 0 chr3 90115838 90116023 -69483760 - B2_Mm1t SINE B2 -5 188 1 3 1272 535 172 0 52 chr3 90116049 90116184 -69483599 - Lx4B LINE L1 -2 7056 6929 3 1272 912 80 0 0 chr3 90116187 90116312 -69483471 - Lx4B LINE L1 -299 6759 6635 3 1272 1316 69 17 6 chr3 90116343 90116519 -69483264 - B2_Mm2 SINE B2 -17 178 1 3 1272 484 213 137 4 chr3 90116519 90116619 -69483164 - B1_Mur2 SINE Alu -31 118 12 3 1272 499 333 111 0 chr3 90116746 90116890 -69482893 - RSINE1 SINE B4 -4 161 2 3 1272 1099 68 0 0 chr3 90116963 90117096 -69482687 - B1_Mus1 SINE Alu -13 135 3 3 1272 454 338 6 48 chr3 90117256 90117424 -69482359 + MER20 DNA MER1_type 2 162 -57 3 1272 650 182 114 34 chr3 90117436 90117612 -69482171 - B2_Mm2 SINE B2 -5 190 1 3 1272 350 293 86 0 chr3 90117800 90117916 -69481867 + B1F SINE Alu 24 149 0 3 1272 692 222 29 7 chr3 90117949 90118085 -69481698 - B1F SINE Alu -5 144 6 3 1272 307 208 62 106 chr3 90117984 90118097 -69481686 - MT2B LTR ERVL -338 263 156 3 1272 2375 152 39 7 chr3 90118124 90118534 -69481249 + Lx3C LINE L1 6552 6974 -2 3 1272 723 283 10 10 chr3 90118599 90118806 -69480977 - B3 SINE B2 -6 210 4 3 1272 1178 34 7 7 chr3 90118887 90119034 -69480749 + B1_Mm SINE Alu 1 147 0 3 1272 276 30 0 0 chr3 90119091 90119124 -69480659 + (TG)n Simple_repeat Simple_repeat 2 34 0 3 1272 599 292 13 31 chr3 90119125 90119284 -69480499 - RSINE1 SINE B4 -6 159 4 3 1272 221 291 11 122 chr3 90119207 90119297 -69480486 - B3A SINE B2 -118 80 1 3 1272 1114 136 32 5 chr3 90119389 90119574 -69480209 - B2_Mm1t SINE B2 -2 191 2 3 1272 711 243 73 86 chr3 90119671 90119835 -69479948 - B3 SINE B2 0 198 37 3 1272 306 0 0 0 chr3 90119835 90119869 -69479914 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 3 1272 796 164 35 7 chr3 90119869 90120010 -69479773 - B1_Mus1 SINE Alu -2 146 2 3 1272 711 237 77 92 chr3 90120010 90120059 -69479724 - B3 SINE B2 -180 36 2 3 1272 26 0 0 0 chr3 90120061 90120087 -69479696 + AT_rich Low_complexity Low_complexity 1 26 0 3 1272 875 158 7 27 chr3 90120097 90120247 -69479536 - B1_Mus2 SINE Alu 0 147 1 3 1272 540 294 32 0 chr3 90120258 90120384 -69479399 - B1_Mur1 SINE Alu -6 143 14 3 1272 1086 105 99 0 chr3 90120384 90120556 -69479227 + B2_Mm2 SINE B2 2 190 -5 3 1272 907 236 28 0 chr3 90120576 90120754 -69479029 + B3 SINE B2 29 211 -5 3 1272 711 204 0 90 chr3 90120776 90120932 -69478851 - B1_Mur2 SINE Alu -1 148 7 3 1272 29 0 0 0 chr3 90120950 90120979 -69478804 + AT_rich Low_complexity Low_complexity 1 29 0 4 1272 655 224 0 0 chr3 90120991 90121107 -69478676 + B3 SINE B2 4 119 -97 4 1272 1689 16 0 0 chr3 90121359 90121548 -69478235 + B2_Mm1a SINE B2 2 190 -3 4 1272 206 118 0 0 chr3 90121662 90121696 -69478087 + (TTTTTA)n Simple_repeat Simple_repeat 3 36 0 4 1272 1099 132 16 5 chr3 90121761 90121941 -69477842 - B2_Mm1a SINE B2 -28 188 1 4 1272 300 264 52 78 chr3 90122304 90122419 -69477364 - B3A SINE B2 -85 113 2 4 1272 656 257 32 63 chr3 90122429 90122587 -69477196 - RSINE1 SINE B4 -3 162 10 4 1272 342 67 0 0 chr3 90122592 90122637 -69477146 + (TC)n Simple_repeat Simple_repeat 1 45 0 4 1272 338 314 64 8 chr3 90122637 90122762 -69477021 - B1F2 SINE Alu -5 144 13 4 1272 226 313 31 94 chr3 90122665 90122792 -69476991 - MT2B LTR ERVL -336 265 147 4 1272 952 135 0 41 chr3 90122908 90123055 -69476728 + B1_Mur4 SINE Alu 1 141 -9 4 1272 977 245 5 19 chr3 90123421 90123633 -69476150 - B3 SINE B2 -6 210 2 4 1272 406 343 234 6 chr3 90123652 90123819 -69475964 - ID_B1 SINE B4 -16 208 4 4 1272 1110 49 28 0 chr3 90123855 90123998 -69475785 - B1_Mus1 SINE Alu 0 148 2 4 1272 342 0 0 0 chr3 90124183 90124221 -69475562 + (TG)n Simple_repeat Simple_repeat 1 38 0 4 1272 631 161 35 9 chr3 90124257 90124370 -69475413 - B1_Mur1 SINE Alu -6 143 28 4 1272 510 305 56 28 chr3 90124481 90124660 -69475123 + B3A SINE B2 1 184 -14 4 1272 598 190 79 40 chr3 90124660 90124786 -69474997 + B1_Mur1 SINE Alu 10 140 -9 4 1272 874 178 29 91 chr3 90125116 90125326 -69474457 + B3A SINE B2 1 197 -1 4 1272 322 273 81 0 chr3 90125653 90125752 -69474031 + PB1D7 SINE Alu 1 107 -13 4 1272 216 0 0 0 chr3 90125752 90125776 -69474007 + (T)n Simple_repeat Simple_repeat 1 24 0 4 1272 803 179 14 7 chr3 90125791 90125932 -69473851 + B1_Mur2 SINE Alu 3 144 -5 4 1272 231 220 39 20 chr3 90126024 90126075 -69473708 + PB1D10 SINE Alu 22 73 -44 4 1272 252 0 0 0 chr3 90126082 90126110 -69473673 + (TG)n Simple_repeat Simple_repeat 2 29 0 4 1272 198 224 0 0 chr3 90127066 90127115 -69472668 + CT-rich Low_complexity Low_complexity 3 51 0 4 1272 353 241 92 0 chr3 90127940 90128027 -69471756 - PB1D7 SINE Alu -43 106 12 4 1272 344 300 50 0 chr3 90128027 90128040 -69471743 - ID_B1 SINE B4 -40 184 80 4 1272 589 231 71 43 chr3 90128263 90128403 -69471380 - RSINE1 SINE B4 -21 144 1 4 1272 216 162 0 0 chr3 90128412 90128449 -69471334 + CT-rich Low_complexity Low_complexity 4 40 0 4 1272 587 275 70 12 chr3 90128449 90128777 -69471006 - L1M4 LINE L1 -2451 3695 3349 4 1272 835 191 0 7 chr3 90128778 90128926 -69470857 - B1_Mur3 SINE Alu -2 147 1 4 1272 186 43 0 0 chr3 90128930 90128953 -69470830 + (T)n Simple_repeat Simple_repeat 1 23 0 4 1272 343 167 17 0 chr3 90128975 90129035 -69470748 - B1_Mm SINE Alu -5 142 82 4 1272 384 259 165 15 chr3 90129031 90129164 -69470619 + MTD LTR MaLR 252 404 -15 4 1272 263 369 19 28 chr3 90129280 90129386 -69470397 + PB1D9 SINE Alu 5 109 -11 4 1272 180 0 0 0 chr3 90129395 90129415 -69470368 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 4 1272 371 159 0 60 chr3 90129476 90129543 -69470240 + B1_Mur4 SINE Alu 1 63 -87 4 1272 315 243 161 36 chr3 90129593 90129785 -69469998 + Charlie1a DNA MER1_type 1185 1400 -55 4 1272 235 65 43 0 chr3 90129886 90129932 -69469851 + (TTTG)n Simple_repeat Simple_repeat 1 48 0 4 1272 561 60 0 56 chr3 90129935 90130024 -69469759 - B1_Mur4 SINE Alu 0 150 67 4 1272 371 104 194 0 chr3 90130051 90130118 -69469665 - B3A SINE B2 -118 80 1 4 1272 305 82 20 0 chr3 90130135 90130184 -69469599 + (TG)n Simple_repeat Simple_repeat 1 50 0 4 1272 581 250 0 62 chr3 90130184 90130329 -69469454 - RSINE1 SINE B4 0 165 30 4 1272 508 232 0 0 chr3 90130365 90130460 -69469323 - PB1 SINE Alu -31 96 2 4 1272 579 220 0 0 chr3 90130719 90130819 -69468964 - ID_B1 SINE B4 -12 212 113 4 1272 300 287 48 73 chr3 90131030 90131124 -69468659 - MER5A DNA MER1_type -16 173 77 4 1272 840 150 28 21 chr3 90131124 90131267 -69468516 + B1_Mur4 SINE Alu 1 144 -6 4 1272 300 287 48 73 chr3 90131267 90131296 -69468487 - MER5A DNA MER1_type -113 76 53 4 1272 514 277 101 14 chr3 90131394 90131533 -69468250 - B3A SINE B2 -36 162 12 4 1272 1208 41 0 0 chr3 90131674 90131820 -69467963 - B1_Mus2 SINE Alu 0 147 2 4 1272 231 380 29 7 chr3 90131907 90132022 -69467761 + MamRep1879 DNA hAT? 19 135 -81 4 1272 1229 54 0 0 chr3 90132022 90132169 -69467614 - B1_Mus2 SINE Alu 0 147 1 4 1272 231 380 29 7 chr3 90132169 90132191 -69467592 + MamRep1879 DNA hAT? 136 158 -58 4 1272 426 259 138 0 chr3 90132239 90132355 -69467428 - RSINE1 SINE B4 -31 134 3 4 1272 760 54 261 0 chr3 90132413 90132524 -69467259 + B1_Mus1 SINE Alu 2 141 -7 4 1272 477 0 0 0 chr3 90132527 90132580 -69467203 + (TAGA)n Simple_repeat Simple_repeat 2 54 0 4 1272 675 290 42 24 chr3 90132939 90133151 -69466632 + B3 SINE B2 1 216 0 4 1272 2074 142 32 16 chr3 90133566 90133938 -69465845 - ORR1C1 LTR MaLR 0 378 1 4 1272 522 192 25 33 chr3 90133960 90134091 -69465692 - B1F SINE Alu 0 117 1 4 1272 26 0 0 0 chr3 90134098 90134124 -69465659 + AT_rich Low_complexity Low_complexity 1 26 0 4 1272 189 107 0 0 chr3 90134780 90134808 -69464975 + (TG)n Simple_repeat Simple_repeat 1 28 0 4 1272 731 222 28 0 chr3 90135095 90135239 -69464544 + B1_Mur2 SINE Alu 2 149 0 4 1272 417 305 110 0 chr3 90135243 90135361 -69464422 + RSINE1 SINE B4 4 134 -31 4 1272 31 0 0 0 chr3 90135458 90135489 -69464294 + AT_rich Low_complexity Low_complexity 1 31 0 4 1272 357 285 57 38 chr3 90135491 90135648 -69464135 - RSINE1 SINE B4 -2 163 4 4 1272 515 226 0 45 chr3 90135680 90135791 -69463992 - B1_Mur1 SINE Alu -1 148 43 4 1272 1298 99 0 26 chr3 90135806 90135846 -69463937 - B2_Mm1t SINE B2 -1 194 160 4 1272 261 0 0 0 chr3 90135846 90135875 -69463908 + (TTTA)n Simple_repeat Simple_repeat 3 31 0 4 1272 1298 75 0 11 chr3 90135875 90136035 -69463748 - B2_Mm1t SINE B2 -33 160 1 4 1272 246 297 31 0 chr3 90136035 90136087 -69463696 - PB1D10 SINE Alu -63 54 1 4 1272 25 51 0 0 chr3 90136092 90136131 -69463652 + AT_rich Low_complexity Low_complexity 1 39 0 4 1272 224 195 24 0 chr3 90136141 90136182 -69463601 + B1_Mus2 SINE Alu 1 42 -105 4 1272 22 0 0 0 chr3 90137087 90137109 -69462674 + AT_rich Low_complexity Low_complexity 1 22 0 4 1272 976 231 27 5 chr3 90137396 90137583 -69462200 + B3 SINE B2 1 191 -25 4 1272 540 306 41 7 chr3 90137775 90137920 -69461863 + RSINE1 SINE B4 16 165 0 4 1272 323 167 0 18 chr3 90137957 90138012 -69461771 + ID2 SINE ID 1 54 -29 4 1272 331 235 87 48 chr3 90138069 90138172 -69461611 - PB1D10 SINE Alu -9 108 2 4 1272 482 282 59 66 chr3 90138613 90138765 -69461018 - B4A SINE B4 -131 161 11 4 1272 517 256 230 11 chr3 90138792 90138812 -69460971 + RCHARR1 DNA MER1_type 44 64 -910 4 1272 255 61 0 0 chr3 90138812 90138845 -69460938 + (TGAA)n Simple_repeat Simple_repeat 1 33 0 4 1272 517 256 230 11 chr3 90138845 90139089 -69460694 + RCHARR1 DNA MER1_type 65 365 -609 4 1272 474 139 130 65 chr3 90139182 90139274 -69460509 - B1_Mur2 SINE Alu -5 144 47 4 1272 333 355 40 8 chr3 90139322 90139447 -69460336 - ID_B1 SINE B4 -9 215 87 4 1272 504 208 230 6 chr3 90139534 90139708 -69460075 - B3 SINE B2 -1 215 3 4 1272 785 289 54 27 chr3 90139887 90140111 -69459672 - B4A SINE B4 -58 234 5 4 1272 715 85 244 8 chr3 90140265 90140384 -69459399 + B1_Mm SINE Alu 1 147 0 4 1272 442 234 8 83 chr3 90140440 90140561 -69459222 - PB1D10 SINE Alu 0 117 6 4 1272 253 321 208 0 chr3 90140629 90140735 -69459048 - B3 SINE B2 -11 205 78 4 1272 468 310 45 65 chr3 90140856 90141056 -69458727 + B3A SINE B2 2 197 -1 4 1272 785 204 135 36 chr3 90141068 90141261 -69458522 - B3 SINE B2 -1 215 4 4 1272 866 153 44 33 chr3 90141288 90141470 -69458313 + B2_Mm2 SINE B2 2 185 -10 4 1272 276 290 0 0 chr3 90141654 90141716 -69458067 + (CGTG)n Simple_repeat Simple_repeat 2 63 0 4 1272 416 315 17 61 chr3 90141756 90141871 -69457912 - B4A SINE B4 -153 139 30 4 1272 2268 111 91 3 chr3 90142067 90142429 -69457354 - ORR1B1 LTR MaLR 0 394 1 4 1272 416 230 133 0 chr3 90142492 90142605 -69457178 + B1_Mur1 SINE Alu 7 134 -15 4 1272 413 225 68 116 chr3 90142662 90142808 -69456975 - B1_Mur2 SINE Alu 0 149 11 4 1272 312 284 12 0 chr3 90142820 90142901 -69456882 - ID_B1 SINE B4 -2 222 141 4 1272 542 310 84 70 chr3 90142932 90143246 -69456537 - B4 SINE B4 -2 290 2 4 1272 387 308 101 20 chr3 90143594 90143793 -69455990 - MLT1L LTR MaLR -32 578 364 4 1272 2411 157 75 13 chr3 90143940 90144462 -69455321 - Lx9 LINE L1 -192 7452 6899 4 1272 562 161 106 9 chr3 90144463 90144576 -69455207 + B1_Mm SINE Alu 24 147 0 4 1272 715 268 14 7 chr3 90144611 90144754 -69455029 - RSINE1 SINE B4 -17 148 5 4 1272 459 52 0 0 chr3 90144858 90144916 -69454867 + (TG)n Simple_repeat Simple_repeat 2 59 0 4 1272 242 273 0 25 chr3 90144916 90144995 -69454788 + (TA)n Simple_repeat Simple_repeat 1 77 0 4 1272 733 240 59 13 chr3 90144999 90145151 -69454632 - B3 SINE B2 -56 160 2 5 1272 509 248 16 33 chr3 90146032 90146153 -69453630 - PB1D7 SINE Alu 0 120 2 5 1272 561 329 18 31 chr3 90146283 90146446 -69453337 + B3A SINE B2 1 161 -37 5 1272 779 170 82 0 chr3 90146582 90146717 -69453066 + B1_Mus1 SINE Alu 3 148 0 5 1272 1245 82 43 11 chr3 90146846 90147004 -69452779 + B2_Mm2 SINE B2 1 158 -37 5 1272 243 0 0 0 chr3 90147004 90147031 -69452752 + (TAAA)n Simple_repeat Simple_repeat 3 29 0 5 1272 1245 82 43 11 chr3 90147031 90147058 -69452725 + B2_Mm2 SINE B2 159 192 -3 5 1272 27 0 0 0 chr3 90147061 90147088 -69452695 + AT_rich Low_complexity Low_complexity 1 27 0 5 1272 2592 57 0 6 chr3 90147478 90147814 -69451969 - L1Md_F2 LINE L1 0 6582 6249 5 1272 701 254 84 45 chr3 90148313 90148515 -69451268 + B3 SINE B2 7 216 0 5 1272 3218 43 2 8 chr3 90148700 90149100 -69450683 + L1Md_F2 LINE L1 6185 6582 0 5 1272 222 175 0 111 chr3 90149500 90149532 -69450251 + PB1D7 SINE Alu 60 86 -34 5 1272 586 331 0 24 chr3 90149532 90149699 -69450084 + RSINE1 SINE B4 2 164 -1 5 1272 365 269 13 0 chr3 90149737 90149815 -69449968 + ID4 SINE ID 1 79 -4 5 1272 325 382 74 15 chr3 90149997 90150094 -69449689 + ID_B1 SINE B4 4 217 -7 5 1272 363 333 48 0 chr3 90150094 90150199 -69449584 + PB1D10 SINE Alu 1 110 -7 5 1272 1142 62 7 0 chr3 90150212 90150357 -69449426 - B1_Mus2 SINE Alu -1 146 1 5 1272 1136 66 132 0 chr3 90150569 90150736 -69449047 + B2_Mm2 SINE B2 1 189 -6 5 1272 236 211 95 40 chr3 90151143 90151217 -69448566 - B1_Mur3 SINE Alu -66 83 6 5 1272 214 225 0 0 chr3 90151184 90151224 -69448559 - ID_B1 SINE B4 -105 119 80 5 1272 352 196 20 20 chr3 90151237 90151336 -69448447 + CT-rich Low_complexity Low_complexity 1 99 0 5 1272 956 203 73 0 chr3 90151348 90151540 -69448243 - B3 SINE B2 -10 206 1 5 1272 798 274 43 5 chr3 90151584 90151771 -69448012 - B3 SINE B2 -19 197 4 5 1272 656 205 58 35 chr3 90151864 90152036 -69447747 + B2_Mm2 SINE B2 2 177 -18 5 1272 251 115 0 37 chr3 90152054 90152108 -69447675 + (TAAA)n Simple_repeat Simple_repeat 3 54 0 5 1272 1246 41 0 0 chr3 90152127 90152274 -69447509 + B1_Mm SINE Alu 1 147 0 5 1272 460 158 21 0 chr3 90152636 90152731 -69447052 + CT-rich Low_complexity Low_complexity 4 100 0 5 1272 983 232 0 5 chr3 90153656 90153864 -69445919 + B3 SINE B2 1 207 -9 5 1272 339 226 252 34 chr3 90153925 90154044 -69445739 + B1_Mm SINE Alu 3 147 0 5 1272 405 164 0 0 chr3 90154211 90154278 -69445505 - B1_Mur4 SINE Alu -83 67 1 5 1272 488 178 33 11 chr3 90154518 90154609 -69445174 + B1_Mur2 SINE Alu 51 143 -6 5 1272 192 125 0 0 chr3 90154610 90154642 -69445141 + (GAAAA)n Simple_repeat Simple_repeat 3 34 0 5 1272 256 286 43 0 chr3 90154665 90154735 -69445048 + B3A SINE B2 120 192 -6 5 1272 652 94 112 9 chr3 90154760 90154867 -69444916 + B2_Mm2 SINE B2 1 118 -77 5 1272 744 253 23 11 chr3 90154861 90155037 -69444746 + B3 SINE B2 39 216 0 5 1272 400 300 0 9 chr3 90156157 90156268 -69443515 + PB1D7 SINE Alu 4 113 -7 5 1272 189 111 36 36 chr3 90156513 90156569 -69443214 + T-rich Low_complexity Low_complexity 2 57 0 5 1272 618 284 19 13 chr3 90156595 90156752 -69443031 - MTE2b LTR MaLR -55 324 167 5 1272 582 232 7 48 chr3 90156749 90156894 -69442889 - B1_Mur1 SINE Alu 0 149 11 5 1272 712 248 21 0 chr3 90157049 90157190 -69442593 + B1F SINE Alu 1 144 -5 5 1272 433 199 417 0 chr3 90157294 90157445 -69442338 + B3 SINE B2 3 216 0 5 1272 675 131 172 0 chr3 90157454 90157576 -69442207 + B1_Mus2 SINE Alu 4 146 -1 5 1272 253 244 32 137 chr3 90157795 90157890 -69441893 + MT2B LTR ERVL 155 239 -362 5 1272 679 211 8 0 chr3 90157817 90157950 -69441833 + B1_Mur2 SINE Alu 11 144 -5 5 1272 340 277 24 48 chr3 90157979 90158104 -69441679 - B3 SINE B2 -7 209 88 5 1272 811 174 35 0 chr3 90158537 90158681 -69441102 + B1_Mur1 SINE Alu 1 149 0 5 1272 252 303 15 0 chr3 90158833 90158899 -69440884 - PB1 SINE Alu -49 78 12 5 1272 307 254 15 15 chr3 90159198 90159266 -69440517 + ID4 SINE ID 10 77 -6 5 1272 1410 70 38 0 chr3 90159810 90159995 -69439788 - B2_Mm2 SINE B2 -2 193 2 5 1272 383 280 110 0 chr3 90160225 90160343 -69439440 - ID_B1 SINE B4 -2 222 92 5 1272 1082 266 58 7 chr3 90160365 90160641 -69439142 - B4 SINE B4 0 292 3 5 1272 1044 177 10 36 chr3 90160656 90160849 -69438934 - B3 SINE B2 0 216 29 5 1272 287 0 53 0 chr3 90160850 90160888 -69438895 + (TTTG)n Simple_repeat Simple_repeat 1 40 0 5 1272 742 149 41 0 chr3 90160916 90161037 -69438746 - B1_Mus2 SINE Alu -12 135 10 5 1272 876 78 130 15 chr3 90161233 90161364 -69438419 + B1_Mus2 SINE Alu 1 146 -1 5 1272 21 36 0 0 chr3 90162269 90162297 -69437486 + AT_rich Low_complexity Low_complexity 1 28 0 5 1272 216 0 0 0 chr3 90162396 90162420 -69437363 + (TA)n Simple_repeat Simple_repeat 1 24 0 5 1272 201 121 0 0 chr3 90163233 90163266 -69436517 + (T)n Simple_repeat Simple_repeat 1 33 0 5 1272 25 31 0 0 chr3 90163565 90163597 -69436186 + AT_rich Low_complexity Low_complexity 1 32 0 5 1272 315 49 0 0 chr3 90163619 90163660 -69436123 + (CA)n Simple_repeat Simple_repeat 2 42 0 5 1272 32 26 0 0 chr3 90164017 90164056 -69435727 + AT_rich Low_complexity Low_complexity 1 39 0 5 1272 204 135 0 0 chr3 90165475 90165512 -69434271 + (A)n Simple_repeat Simple_repeat 1 37 0 5 1272 246 128 0 0 chr3 90167044 90167083 -69432700 + (T)n Simple_repeat Simple_repeat 1 39 0 5 1272 2517 40 65 0 chr3 90167595 90167920 -69431863 - ORR1A0 LTR MaLR 0 346 1 5 1272 997 65 43 0 chr3 90168132 90168270 -69431513 + B1_Mus2 SINE Alu 2 145 -2 5 1272 351 244 39 0 chr3 90168676 90168754 -69431029 + B3 SINE B2 2 82 -134 5 1272 831 143 29 0 chr3 90168824 90168964 -69430819 - B1_Mus1 SINE Alu 0 148 5 5 1272 1232 108 27 0 chr3 90169118 90169303 -69430480 + B2_Mm2 SINE B2 3 192 -3 5 1272 210 71 0 0 chr3 90170016 90170044 -69429739 + (T)n Simple_repeat Simple_repeat 1 28 0 5 1272 21 0 0 0 chr3 90170056 90170077 -69429706 + AT_rich Low_complexity Low_complexity 1 21 0 5 1272 315 0 0 0 chr3 90171381 90171416 -69428367 + (TG)n Simple_repeat Simple_repeat 1 35 0 5 1272 1208 20 7 0 chr3 90171524 90171670 -69428113 - B1_Mm SINE Alu 0 147 1 5 1272 217 350 0 0 chr3 90173209 90173269 -69426514 + B1_Mm SINE Alu 59 118 -29 5 1272 214 239 29 29 chr3 90173577 90173646 -69426137 + T-rich Low_complexity Low_complexity 2 70 0 5 1272 1107 104 59 16 chr3 90173666 90173852 -69425931 - B2_Mm2 SINE B2 0 195 2 5 1272 278 208 0 26 chr3 90173947 90174022 -69425761 + PB1 SINE Alu 2 61 -66 5 1272 304 293 0 24 chr3 90174028 90174112 -69425671 + ID4_ SINE ID 1 82 -1 5 1272 273 325 0 13 chr3 90174130 90174208 -69425575 + PB1D10 SINE Alu 11 87 -30 5 1272 472 243 83 57 chr3 90174203 90174360 -69425423 + B3A SINE B2 37 197 -1 5 1272 620 209 13 224 chr3 90174367 90174519 -69425264 - B3 SINE B2 -8 208 74 5 1272 1259 92 22 0 chr3 90174616 90174800 -69424983 - B2_Mm1t SINE B2 -4 189 2 5 1272 1134 50 0 0 chr3 90174832 90174971 -69424812 + B1_Mus2 SINE Alu 3 141 -6 5 1272 318 26 0 0 chr3 90174974 90175013 -69424770 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 5 1272 890 98 35 0 chr3 90175111 90175254 -69424529 + URR1A DNA MER1_type 79 226 0 5 1272 336 321 27 0 chr3 90176349 90176461 -69423322 - RSINE1 SINE B4 -47 118 4 5 1272 1288 178 17 45 chr3 90176560 90176848 -69422935 - ORR1D1 LTR MaLR -94 280 1 5 1272 351 0 0 0 chr3 90176849 90176888 -69422895 + (CA)n Simple_repeat Simple_repeat 1 39 0 5 1272 548 201 89 7 chr3 90176997 90177132 -69422651 - B2_Mm2 SINE B2 -1 194 49 5 1272 210 143 0 0 chr3 90177132 90177167 -69422616 + (TTCC)n Simple_repeat Simple_repeat 4 38 0 5 1272 31 0 0 0 chr3 90177394 90177425 -69422358 + AT_rich Low_complexity Low_complexity 1 31 0 5 1273 228 111 0 0 chr3 90177813 90177849 -69421934 + (T)n Simple_repeat Simple_repeat 1 36 0 5 1273 1058 110 0 0 chr3 90178674 90178820 -69420963 + B1_Mus1 SINE Alu 1 146 -2 5 1273 1119 92 104 0 chr3 90178890 90179063 -69420720 + B2_Mm1t SINE B2 2 192 -1 5 1273 261 57 0 0 chr3 90179063 90179098 -69420685 + (GA)n Simple_repeat Simple_repeat 1 35 0 5 1273 558 0 0 0 chr3 90179098 90179160 -69420623 + (GGAA)n Simple_repeat Simple_repeat 4 65 0 5 1273 787 152 7 0 chr3 90179161 90179299 -69420484 + B1_Mur4 SINE Alu 1 139 -11 5 1273 238 273 36 108 chr3 90179303 90179373 -69420410 - B3A SINE B2 -95 103 41 5 1273 886 165 60 11 chr3 90179373 90179557 -69420226 - B2_Mm2 SINE B2 -2 193 1 5 1273 238 273 36 108 chr3 90179557 90179597 -69420186 - B3A SINE B2 -158 40 1 5 1273 245 294 120 0 chr3 90179597 90179676 -69420107 - ORSL DNA Tip100 -185 90 1 5 1273 2771 83 38 8 chr3 90180726 90181124 -69418659 - L1Md_F2 LINE L1 0 6582 6173 5 1273 859 189 36 129 chr3 90182987 90183267 -69416516 + MTE2a LTR MaLR 1 254 -125 5 1273 414 0 0 0 chr3 90183622 90183668 -69416115 + (TTTA)n Simple_repeat Simple_repeat 2 47 0 6 1273 1095 44 0 0 chr3 90183668 90183804 -69415979 - B1_Mus1 SINE Alu -12 136 1 6 1273 1109 129 27 0 chr3 90183811 90183997 -69415786 - B2_Mm2 SINE B2 -2 193 3 6 1273 1167 56 0 0 chr3 90184017 90184161 -69415622 - B1_Mm SINE Alu 0 147 4 6 1273 689 173 90 8 chr3 90184197 90184331 -69415452 - B1_Mus1 SINE Alu -2 146 2 6 1273 902 191 73 25 chr3 90184376 90184580 -69415203 + B3 SINE B2 3 216 0 6 1273 693 170 73 15 chr3 90184627 90184764 -69415019 + B1_Mus2 SINE Alu 1 145 -2 6 1273 1062 125 0 0 chr3 90184764 90185097 -69414686 + (CA)n Simple_repeat Simple_repeat 1 333 0 6 1273 272 196 248 18 chr3 90185097 90185206 -69414577 + L1MB8 LINE L1 5803 5936 -242 6 1273 321 244 207 0 chr3 90186022 90186157 -69413626 - MER58B DNA MER1_type -97 244 82 6 1273 373 319 20 92 chr3 90186327 90186479 -69413304 + RSINE1 SINE B4 2 142 -23 6 1273 210 303 88 73 chr3 90186479 90186519 -69413264 + B2_Mm2 SINE B2 1 195 0 6 1273 309 235 136 0 chr3 90186743 90186824 -69412959 + B1F SINE Alu 46 137 -12 6 1273 30 0 0 0 chr3 90187241 90187271 -69412512 + AT_rich Low_complexity Low_complexity 1 30 0 6 1273 809 139 78 0 chr3 90187271 90187400 -69412383 - B1_Mur4 SINE Alu 0 150 12 6 1273 1323 35 105 0 chr3 90187402 90187574 -69412209 + B2_Mm1t SINE B2 1 190 -3 6 1273 558 253 70 38 chr3 90188037 90188222 -69411561 - B3A SINE B2 -6 192 2 6 1273 1063 54 7 39 chr3 90188279 90188432 -69411351 + B1_Mus1 SINE Alu 1 148 0 6 1273 348 155 0 0 chr3 90188434 90188505 -69411278 + A-rich Low_complexity Low_complexity 1 71 0 6 1273 198 0 0 0 chr3 90188636 90188658 -69411125 + (TC)n Simple_repeat Simple_repeat 1 22 0 6 1273 850 8 235 0 chr3 90189581 90189700 -69410083 + B1_Mus2 SINE Alu 1 147 0 6 1273 411 284 261 21 chr3 90189765 90189999 -69409784 + B4 SINE B4 1 290 -2 6 1273 269 291 0 37 chr3 90189943 90190025 -69409758 + B3A SINE B2 110 188 -10 6 1273 668 143 17 8 chr3 90192077 90192197 -69407586 + URR1B DNA MER1_type 105 225 0 6 1273 289 230 59 92 chr3 90192197 90192230 -69407553 - CYRA11_Mm Unknown Y-chromosome -325 292 145 6 1273 206 222 0 0 chr3 90193658 90193703 -69406080 + (CAG)n Simple_repeat Simple_repeat 1 45 0 6 1273 545 284 116 6 chr3 90194820 90195057 -69404726 - B4A SINE B4 -4 288 7 6 1273 699 108 0 0 chr3 90199526 90199637 -69400146 + (CAGA)n Simple_repeat Simple_repeat 2 112 0 6 1273 539 241 21 28 chr3 90200119 90200260 -69399523 + B1F1 SINE Alu 1 140 -9 6 1273 522 265 7 45 chr3 90200657 90200811 -69398972 - B1_Mur1 SINE Alu -1 148 1 6 1273 266 246 58 0 chr3 90200999 90201010 -69398773 + ID SINE ID 70 84 -140 6 1273 240 235 111 56 chr3 90201010 90201100 -69398683 + B1_Mm SINE Alu 1 95 -52 6 1273 489 236 28 0 chr3 90201124 90201230 -69398553 + ID_B1 SINE B4 113 221 -3 6 1273 482 212 106 70 chr3 90201232 90201374 -69398409 + B1_Mus2 SINE Alu 1 147 0 6 1273 657 80 170 74 chr3 90201381 90201503 -69398280 + B1_Mus1 SINE Alu 1 138 -10 6 1273 243 0 0 0 chr3 90201503 90201530 -69398253 + (TAAAA)n Simple_repeat Simple_repeat 2 28 0 6 1273 657 80 170 74 chr3 90201530 90201542 -69398241 + B1_Mus1 SINE Alu 139 148 0 6 1273 1035 109 0 0 chr3 90201675 90201822 -69397961 + B1_Mus1 SINE Alu 2 148 0 6 1273 428 288 39 74 chr3 90201834 90202076 -69397707 + L1MB5 LINE L1 5512 5748 -2247 6 1273 690 64 0 0 chr3 90202084 90202178 -69397605 + B1_Mus2 SINE Alu 42 135 -12 6 1273 474 101 0 0 chr3 90202178 90202247 -69397536 + (TAA)n Simple_repeat Simple_repeat 2 70 0 6 1273 233 362 36 41 chr3 90202341 90202537 -69397246 + L1MB5 LINE L1 5888 6082 -92 6 1273 227 296 13 53 chr3 90202626 90202701 -69397082 - B4 SINE B4 0 292 221 6 1273 289 267 93 65 chr3 90202956 90203064 -69396719 + RSINE1 SINE B4 3 113 -52 6 1273 336 267 0 13 chr3 90203213 90203289 -69396494 + PB1D10 SINE Alu 21 95 -22 6 1273 328 308 0 11 chr3 90203289 90203305 -69396478 + ID_B1 SINE B4 102 192 -32 6 1273 364 231 12 25 chr3 90203320 90203400 -69396383 + PB1D10 SINE Alu 10 88 -29 6 1273 204 40 0 0 chr3 90203402 90203427 -69396356 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 6 1273 307 270 50 67 chr3 90206590 90206709 -69393074 - PB1D10 SINE Alu 0 117 1 6 1273 190 143 45 45 chr3 90208148 90208192 -69391591 + L3b LINE CR1 96 139 -343 6 1273 1050 193 0 66 chr3 90209050 90209261 -69390522 - URR1A DNA MER1_type -2 224 28 6 1273 290 329 61 24 chr3 90209285 90209450 -69390333 + B3 SINE B2 40 210 -6 6 1273 282 304 48 10 chr3 90209629 90209732 -69390051 + PB1D10 SINE Alu 9 115 -2 6 1273 264 351 18 0 chr3 90210741 90210855 -69388928 + PB1D7 SINE Alu 1 116 -4 6 1273 1097 198 95 10 chr3 90211058 90211399 -69388384 + MTD LTR MaLR 1 411 -8 6 1273 407 267 31 0 chr3 90211546 90211655 -69388128 - PB1D9 SINE Alu -5 115 3 6 1273 216 0 0 0 chr3 90211762 90211786 -69387997 + (T)n Simple_repeat Simple_repeat 1 24 0 6 1273 497 267 0 24 chr3 90211807 90211930 -69387853 - PB1D9 SINE Alu 0 120 1 6 1273 485 315 84 0 chr3 90212802 90212980 -69386803 + MIRb SINE MIR 4 196 -72 6 1273 215 254 151 27 chr3 90213303 90213376 -69386407 - BC1_Mm scRNA scRNA -62 90 9 6 1273 256 306 14 0 chr3 90213604 90213676 -69386107 - RSINE1 SINE B4 -83 82 10 6 1273 926 220 65 0 chr3 90214498 90214684 -69385099 - B3 SINE B2 -3 213 16 6 1273 235 316 0 17 chr3 90215634 90215692 -69384091 + Charlie1 DNA MER1_type 1 57 -2724 6 1273 570 202 0 35 chr3 90216174 90216287 -69383496 - PB1D10 SINE Alu -6 111 3 6 1273 323 200 13 26 chr3 90218262 90218339 -69381444 + PB1D10 SINE Alu 42 117 0 6 1273 234 292 15 0 chr3 90219311 90219376 -69380407 - BC1_Mm scRNA scRNA -62 90 25 6 1273 523 186 98 0 chr3 90220083 90220208 -69379575 + B1_Mur4 SINE Alu 10 147 -3 6 1273 526 222 28 0 chr3 90220644 90220752 -69379031 + ID_B1 SINE B4 100 210 -14 6 1273 631 268 90 23 chr3 90220778 90221034 -69378749 + Lx7 LINE L1 7151 7423 -273 6 1273 617 148 131 15 chr3 90221040 90221170 -69378613 - B1_Mur2 SINE Alu 0 149 5 6 1273 1190 87 27 5 chr3 90221178 90221363 -69378420 - B2_Mm2 SINE B2 -6 189 1 6 1273 891 197 37 11 chr3 90223199 90223389 -69376394 - B3A SINE B2 -1 197 3 6 1273 470 326 21 52 chr3 90223390 90223581 -69376202 - ID_B1 SINE B4 -1 223 39 6 1273 1174 90 6 6 chr3 90223655 90223834 -69375949 + (GGAGA)n Simple_repeat Simple_repeat 2 180 0 6 1273 710 89 40 0 chr3 90224010 90224111 -69375672 + B1_Mus2 SINE Alu 42 146 -1 6 1273 691 125 35 9 chr3 90225398 90225511 -69374272 + B1_Mur4 SINE Alu 35 150 0 6 1273 498 108 0 0 chr3 90225512 90225586 -69374197 + (GGA)n Simple_repeat Simple_repeat 3 76 0 6 1273 1600 16 26 5 chr3 90225832 90226021 -69373762 - B2_Mm1a SINE B2 0 193 1 6 1273 24 0 0 0 chr3 90226376 90226400 -69373383 + AT_rich Low_complexity Low_complexity 1 24 0 6 1273 539 295 99 44 chr3 90226437 90226710 -69373073 - B4A SINE B4 -2 290 3 6 1273 439 292 14 91 chr3 90226754 90226897 -69372886 - RSINE1 SINE B4 -29 136 5 6 1273 1398 72 16 16 chr3 90226927 90227111 -69372672 - B2_Mm2 SINE B2 -11 184 1 6 1273 484 326 30 0 chr3 90227213 90227348 -69372435 - RSINE1 SINE B4 -25 140 2 6 1273 227 313 136 39 chr3 90227348 90227436 -69372347 + RMER6A LTR ERVK 34 131 -625 6 1273 305 284 8 76 chr3 90227371 90227383 -69372400 + MT2B LTR ERVL 154 157 -444 6 1273 578 200 66 8 chr3 90227383 90227504 -69372279 + B1_Mur3 SINE Alu 2 129 -20 6 1273 351 358 0 24 chr3 90227525 90227651 -69372132 - RSINE1 SINE B4 -39 126 4 6 1273 469 229 31 3 chr3 90227682 90227803 -69371980 + B1F1 SINE Alu 4 126 -23 6 1273 288 186 0 0 chr3 90228121 90228180 -69371603 + A-rich Low_complexity Low_complexity 2 60 0 6 1273 398 286 41 16 chr3 90228424 90228545 -69371238 + PB1 SINE Alu 1 124 -3 6 1273 389 376 0 0 chr3 90228546 90228647 -69371136 + PB1D10 SINE Alu 1 101 -16 6 1273 375 255 0 117 chr3 90228753 90228873 -69370910 + MT2B LTR ERVL 152 257 -344 6 1273 809 199 0 29 chr3 90228773 90228913 -69370870 + B1_Mus1 SINE Alu 8 143 -5 6 1273 1223 55 0 0 chr3 90229036 90229182 -69370601 - B1_Mus2 SINE Alu 0 147 2 6 1273 346 343 0 10 chr3 90229448 90229548 -69370235 + PB1D10 SINE Alu 8 106 -11 6 1273 385 268 0 67 chr3 90229621 90229725 -69370058 + PB1D7 SINE Alu 19 115 -5 6 1273 418 328 15 30 chr3 90229752 90229887 -69369896 + ID_B1 SINE B4 84 216 -8 6 1273 340 176 0 0 chr3 90230201 90230269 -69369514 + B3 SINE B2 149 216 0 6 1273 237 75 0 70 chr3 90230306 90230349 -69369434 + PB1D9 SINE Alu 81 120 0 6 1273 789 157 35 14 chr3 90230383 90230525 -69369258 - B1_Mur4 SINE Alu -5 145 1 6 1273 215 298 0 50 chr3 90230972 90231032 -69368751 - RSINE1 SINE B4 -106 59 3 6 1273 843 149 74 7 chr3 90231149 90231284 -69368499 + B1_Mur4 SINE Alu 1 144 -6 6 1273 188 250 16 0 chr3 90231287 90231351 -69368432 + GA-rich Low_complexity Low_complexity 2 66 0 6 1273 920 132 0 6 chr3 90231354 90231521 -69368262 + (GGGGA)n Simple_repeat Simple_repeat 2 167 0 7 1273 868 101 0 44 chr3 90231898 90232033 -69367750 + B1_Mur4 SINE Alu 22 150 0 7 1273 305 267 10 126 chr3 90232043 90232146 -69367637 + ID_B1 SINE B4 79 169 -55 7 1273 292 245 43 113 chr3 90232055 90232170 -69367613 + PB1D10 SINE Alu 10 116 -1 7 1273 313 266 103 70 chr3 90233925 90234076 -69365707 + L1MEg LINE L1 1720 1875 -4209 7 1273 1210 61 0 0 chr3 90234076 90234223 -69365560 + B1_Mus1 SINE Alu 2 148 0 7 1273 313 266 103 70 chr3 90234223 90234285 -69365498 + L1MEg LINE L1 1876 1939 -4145 7 1273 401 139 25 0 chr3 90234285 90234364 -69365419 + GA-rich Low_complexity Low_complexity 4 84 0 7 1273 829 137 76 0 chr3 90234530 90234661 -69365122 + B1_Mus1 SINE Alu 1 141 -7 7 1273 363 44 0 0 chr3 90234676 90234721 -69365062 + (GA)n Simple_repeat Simple_repeat 2 46 0 7 1273 282 350 37 31 chr3 90234766 90234928 -69364855 + RSINE1 SINE B4 1 163 -2 7 1273 349 235 21 86 chr3 90234992 90235085 -69364698 - PB1D10 SINE Alu -30 87 1 7 1273 591 121 76 10 chr3 90235295 90235397 -69364386 - B1_Mur2 SINE Alu -5 144 31 7 1273 233 256 77 116 chr3 90235330 90235511 -69364272 - RLTR25A LTR ERVK -527 576 403 7 1273 340 190 0 0 chr3 90235570 90235628 -69364155 - PB1D7 SINE Alu -61 59 2 7 1273 288 0 0 0 chr3 90235964 90235996 -69363787 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 7 1273 715 90 0 0 chr3 90235997 90236097 -69363686 - B1_Mur3 SINE Alu -11 138 39 7 1273 39 0 0 0 chr3 90236591 90236630 -69363153 + AT_rich Low_complexity Low_complexity 1 39 0 7 1273 213 222 0 0 chr3 90236774 90236828 -69362955 + CT-rich Low_complexity Low_complexity 3 56 0 7 1273 184 200 19 74 chr3 90237754 90237808 -69361975 - L2 LINE L2 -1714 1705 1655 7 1273 326 248 67 29 chr3 90238330 90238434 -69361349 - LSU-rRNA_Hsa rRNA rRNA -2975 2060 1953 7 1273 258 213 0 0 chr3 90238684 90238702 -69361081 + A-rich Low_complexity Low_complexity 1 18 0 7 1273 1285 34 0 0 chr3 90238702 90238848 -69360935 + B1_Mus2 SINE Alu 2 147 0 7 1273 258 213 0 0 chr3 90238848 90238890 -69360893 + A-rich Low_complexity Low_complexity 19 60 0 7 1273 244 209 242 55 chr3 90239042 90239133 -69360650 - PB1D10 SINE Alu -1 116 9 7 1273 248 260 231 13 chr3 90239068 90239146 -69360637 - ID_B1 SINE B4 -52 172 78 7 1273 1171 57 0 0 chr3 90239228 90239368 -69360415 + B1_Mus1 SINE Alu 4 143 -5 7 1273 327 49 0 0 chr3 90239369 90239410 -69360373 + (TAA)n Simple_repeat Simple_repeat 2 42 0 7 1273 408 125 0 0 chr3 90239509 90239573 -69360210 + (TA)n Simple_repeat Simple_repeat 1 64 0 7 1273 224 157 0 19 chr3 90239636 90239688 -69360095 + T-rich Low_complexity Low_complexity 5 55 0 7 1273 441 316 85 17 chr3 90239691 90239868 -69359915 - B4A SINE B4 -96 196 8 7 1273 689 164 0 0 chr3 90239900 90240004 -69359779 + B1_Mus2 SINE Alu 34 137 -10 7 1273 351 0 0 0 chr3 90240004 90240043 -69359740 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 7 1273 22 56 0 0 chr3 90240090 90240126 -69359657 + AT_rich Low_complexity Low_complexity 1 36 0 7 1273 320 284 30 77 chr3 90240174 90240342 -69359441 + Arthur1B DNA Tip100 773 932 -293 7 1273 253 295 23 49 chr3 90240388 90240483 -69359300 + ID4 SINE ID 3 95 -57 7 1273 503 189 53 0 chr3 90240570 90240665 -69359118 - B1_Mus1 SINE Alu -39 109 10 7 1273 272 204 19 0 chr3 90240619 90240673 -69359110 - B4A SINE B4 -153 139 85 7 1273 1135 95 0 0 chr3 90240687 90240834 -69358949 + B1_Mus1 SINE Alu 2 148 0 7 1273 210 71 0 0 chr3 90240836 90240864 -69358919 + (A)n Simple_repeat Simple_repeat 1 28 0 7 1273 198 0 0 0 chr3 90240999 90241021 -69358762 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 7 1273 296 186 149 11 chr3 90241051 90241138 -69358645 + ID_B1 SINE B4 126 224 0 7 1273 287 260 188 0 chr3 90241210 90241306 -69358477 - PB1D10 SINE Alu -1 116 3 7 1273 375 207 115 0 chr3 90241223 90241310 -69358473 - ID_B1 SINE B4 -48 176 80 7 1273 458 190 27 164 chr3 90241516 90241699 -69358084 + MT2B LTR ERVL 107 264 -337 7 1273 910 37 0 0 chr3 90241595 90241704 -69358079 + B1_Mus1 SINE Alu 10 118 -30 7 1273 198 0 0 0 chr3 90241713 90241735 -69358048 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 7 1273 439 299 31 101 chr3 90241808 90242133 -69357650 - B4 SINE B4 -16 276 9 7 1273 4022 130 24 74 chr3 90242165 90242912 -69356871 - RMER6A LTR ERVK 0 756 47 7 1273 353 240 274 24 chr3 90242988 90243112 -69356671 + RSINE1 SINE B4 2 156 -9 7 1273 432 284 155 0 chr3 90243145 90243300 -69356483 + B3A SINE B2 2 180 -18 7 1273 180 0 0 0 chr3 90243313 90243333 -69356450 + (T)n Simple_repeat Simple_repeat 1 20 0 7 1273 1133 71 0 0 chr3 90243337 90243477 -69356306 - B1_Mus2 SINE Alu -7 140 1 7 1273 625 138 0 21 chr3 90243477 90243573 -69356210 - ORR1D1 LTR MaLR -275 99 6 7 1273 189 0 0 0 chr3 90243638 90243659 -69356124 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 7 1273 704 139 20 0 chr3 90243663 90243764 -69356019 - B1_Mur2 SINE Alu -1 148 46 7 1273 264 210 93 58 chr3 90243704 90243790 -69355993 - RLTR25A LTR ERVK -527 576 488 7 1273 793 163 7 49 chr3 90244306 90244448 -69355335 + B1_Mur2 SINE Alu 6 141 -8 7 1273 195 69 0 0 chr3 90244448 90244477 -69355306 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 7 1273 1683 178 90 22 chr3 90244597 90244954 -69354829 - ORR1C2 LTR MaLR -3 381 1 7 1273 249 290 36 108 chr3 90245202 90245341 -69354442 + MT2B LTR ERVL 129 257 -344 7 1273 664 209 7 54 chr3 90245246 90245393 -69354390 + B1_Mur4 SINE Alu 11 150 0 7 1273 621 290 6 58 chr3 90245411 90245583 -69354200 + B3A SINE B2 36 198 0 7 1273 189 0 0 0 chr3 90245617 90245638 -69354145 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 7 1273 372 139 0 5 chr3 90245679 90245744 -69354039 - B2_Mm2 SINE B2 -107 109 47 7 1273 1199 105 35 0 chr3 90245781 90245953 -69353830 - B2_Mm1t SINE B2 -14 179 2 7 1273 562 234 105 0 chr3 90245954 90246078 -69353705 + B1_Mur2 SINE Alu 13 149 0 7 1273 1169 104 6 0 chr3 90246095 90246259 -69353524 + B2_Mm1a SINE B2 1 165 -28 7 1273 462 79 0 0 chr3 90246300 90246363 -69353420 + (TC)n Simple_repeat Simple_repeat 1 63 0 7 1273 342 245 98 0 chr3 90246363 90246465 -69353318 - PB1D9 SINE Alu 0 120 9 7 1273 270 73 0 0 chr3 90246474 90246515 -69353268 + (CA)n Simple_repeat Simple_repeat 1 41 0 7 1273 983 153 7 0 chr3 90246531 90246675 -69353108 + B1_Mus1 SINE Alu 4 148 0 7 1273 1253 41 0 0 chr3 90246677 90246824 -69352959 + B1_Mm SINE Alu 1 147 0 7 1273 567 78 0 0 chr3 90246824 90246901 -69352882 + (GAAA)n Simple_repeat Simple_repeat 3 79 0 7 1273 207 0 0 0 chr3 90246938 90246961 -69352822 + (T)n Simple_repeat Simple_repeat 1 23 0 7 1273 1223 61 0 0 chr3 90246961 90247108 -69352675 + B1_Mus1 SINE Alu 2 148 0 7 1273 694 210 145 0 chr3 90247119 90247305 -69352478 - B3 SINE B2 -3 213 1 7 1273 1960 168 29 47 chr3 90247799 90248181 -69351602 - ORR1C1 LTR MaLR 0 378 4 7 1273 1149 55 0 64 chr3 90248196 90248214 -69351569 - B1_Mus1 SINE Alu -2 146 136 7 1273 240 35 0 0 chr3 90248214 90248243 -69351540 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 7 1273 1149 55 0 64 chr3 90248243 90248380 -69351403 - B1_Mus1 SINE Alu -13 135 1 7 1273 724 264 12 12 chr3 90248781 90248950 -69350833 + ID_B1 SINE B4 2 170 -54 7 1273 435 239 25 76 chr3 90248864 90248982 -69350801 + PB1D10 SINE Alu 6 117 0 7 1273 210 204 20 20 chr3 90249060 90249110 -69350673 + (TATG)n Simple_repeat Simple_repeat 2 51 0 7 1273 1247 54 0 0 chr3 90249136 90249283 -69350500 + B1_Mus2 SINE Alu 1 147 0 7 1273 961 157 194 6 chr3 90249337 90249517 -69350266 - B3 SINE B2 0 216 3 7 1273 776 170 19 58 chr3 90249538 90249694 -69350089 - B1_Mur4 SINE Alu 0 150 1 7 1273 293 194 32 0 chr3 90250417 90250479 -69349304 + MIRc SINE MIR 177 240 -28 7 1273 324 0 0 0 chr3 90251498 90251534 -69348249 + (TTTA)n Simple_repeat Simple_repeat 4 39 0 7 1273 1193 68 0 0 chr3 90251583 90251730 -69348053 + B1_Mus1 SINE Alu 2 148 0 7 1273 198 103 0 0 chr3 90251730 90251759 -69348024 + (A)n Simple_repeat Simple_repeat 1 29 0 7 1273 431 315 15 38 chr3 90251763 90251895 -69347888 - ID_B1 SINE B4 -94 130 2 7 1273 278 317 0 0 chr3 90252044 90252104 -69347679 + RSINE1 SINE B4 81 140 -25 7 1273 712 209 23 8 chr3 90252168 90252298 -69347485 + B3 SINE B2 2 133 -83 7 1273 244 289 23 35 chr3 90252304 90252390 -69347393 + BC1_Mm scRNA scRNA 3 87 -65 7 1273 431 278 187 10 chr3 90252518 90252721 -69347062 + Charlie1a DNA MER1_type 92 328 -1127 7 1273 373 288 127 33 chr3 90252646 90252858 -69346925 + B4 SINE B4 9 240 -52 7 1273 850 192 19 6 chr3 90252851 90253008 -69346775 + B3 SINE B2 58 216 0 7 1273 274 224 13 107 chr3 90253008 90253083 -69346700 + B4 SINE B4 211 278 -14 7 1273 823 145 86 14 chr3 90253121 90253261 -69346522 + B1_Mur4 SINE Alu 1 150 0 7 1273 456 231 24 49 chr3 90253305 90253428 -69346355 + PB1D7 SINE Alu 1 120 0 7 1273 267 281 32 8 chr3 90253514 90253597 -69346186 - ID4 SINE ID 0 83 1 7 1273 704 35 0 0 chr3 90253597 90253681 -69346102 + B1_Mm SINE Alu 64 147 0 7 1273 406 219 61 30 chr3 90253697 90253796 -69345987 - B1F SINE Alu -28 121 20 8 1273 466 224 391 0 chr3 90253796 90253838 -69345945 - ID_B1 SINE B4 -13 175 2 8 1273 513 200 217 0 chr3 90253842 90253957 -69345826 - B1F SINE Alu 0 149 10 8 1273 221 0 35 0 chr3 90253967 90253996 -69345787 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 8 1273 377 239 11 32 chr3 90254006 90254101 -69345682 - ID_B1 SINE B4 -30 194 102 8 1273 343 299 0 0 chr3 90254106 90254193 -69345590 + Charlie1a DNA MER1_type 1325 1411 -44 7 1273 814 150 69 28 chr3 90254237 90254381 -69345402 + B1_Mur4 SINE Alu 1 150 0 8 1273 24 0 0 0 chr3 90254789 90254813 -69344970 + GC_rich Low_complexity Low_complexity 1 24 0 8 1273 269 276 0 0 chr3 90255499 90255557 -69344226 - B3A SINE B2 -139 59 2 8 1273 361 286 207 20 chr3 90255586 90255736 -69344047 - ID_B1 SINE B4 -45 179 2 8 1273 504 243 114 118 chr3 90256195 90256484 -69343299 - B4 SINE B4 0 292 5 8 1273 441 237 52 0 chr3 90256511 90256608 -69343175 - PB1D10 SINE Alu -5 112 11 8 1273 283 287 115 62 chr3 90256530 90256660 -69343123 - MT2B2 LTR ERVL -338 246 110 8 1273 531 0 0 0 chr3 90257050 90257109 -69342674 + (TG)n Simple_repeat Simple_repeat 1 59 0 8 1273 252 0 0 0 chr3 90257110 90257138 -69342645 + (TGG)n Simple_repeat Simple_repeat 2 29 0 8 1273 651 109 11 0 chr3 90257148 90257240 -69342543 + B1_Mur3 SINE Alu 25 117 -32 8 1273 247 230 30 121 chr3 90257193 90257292 -69342491 - B1_Mm SINE Alu -56 91 2 8 1273 411 38 0 0 chr3 90257319 90257372 -69342411 + (GA)n Simple_repeat Simple_repeat 2 54 0 8 1273 1415 69 37 0 chr3 90257576 90257764 -69342019 - B2_Mm2 SINE B2 0 195 1 8 1273 24 0 0 0 chr3 90257771 90257795 -69341988 + AT_rich Low_complexity Low_complexity 1 24 0 8 1273 785 176 0 30 chr3 90257855 90257990 -69341793 - B1_Mus2 SINE Alu 0 147 17 8 1273 21 0 0 0 chr3 90257999 90258020 -69341763 + AT_rich Low_complexity Low_complexity 1 21 0 8 1273 669 261 13 13 chr3 90258038 90258193 -69341590 - RSINE1 SINE B4 -6 159 5 8 1273 39 0 0 0 chr3 90258235 90258274 -69341509 + AT_rich Low_complexity Low_complexity 1 39 0 8 1273 374 279 59 9 chr3 90258285 90258394 -69341389 + B1F SINE Alu 3 124 -3 8 1273 265 266 132 9 chr3 90258450 90258564 -69341219 + Tigger5 DNA MER2_type 2212 2339 -67 8 1273 189 107 0 0 chr3 90259355 90259383 -69340400 + (TCC)n Simple_repeat Simple_repeat 1 28 0 8 1273 693 184 63 42 chr3 90259383 90259525 -69340258 - B1_Mus2 SINE Alu -1 146 2 8 1273 360 0 0 0 chr3 90260003 90260043 -69339740 + (TG)n Simple_repeat Simple_repeat 1 40 0 8 1273 213 39 0 0 chr3 90260043 90260068 -69339715 + (CG)n Simple_repeat Simple_repeat 2 27 0 8 1273 1322 129 0 5 chr3 90261529 90261724 -69338059 + B2_Mm2 SINE B2 1 194 -1 8 1273 206 293 141 0 chr3 90261832 90261931 -69337852 - MIR3 SINE MIR -22 186 74 8 1273 206 320 92 15 chr3 90262422 90262552 -69337231 - MIR3 SINE MIR -55 153 14 8 1273 246 260 0 0 chr3 90263422 90263472 -69336311 - PB1D7 SINE Alu -12 108 59 8 1273 851 163 13 26 chr3 90264204 90264355 -69335428 - B1_Mur2 SINE Alu 0 149 1 8 1273 889 139 42 0 chr3 90264609 90264753 -69335030 - B1_Mur4 SINE Alu 0 150 1 8 1273 519 224 28 9 chr3 90267285 90267393 -69332390 + B1_Mus1 SINE Alu 39 148 0 8 1273 203 237 0 0 chr3 90267934 90267972 -69331811 + polypurine Low_complexity Low_complexity 1 38 0 8 1273 355 83 33 0 chr3 90267973 90268033 -69331750 + (GA)n Simple_repeat Simple_repeat 1 62 0 8 1273 564 84 0 0 chr3 90268219 90268302 -69331481 + (TG)n Simple_repeat Simple_repeat 1 83 0 8 1273 207 100 0 0 chr3 90269357 90269387 -69330396 + (CAG)n Simple_repeat Simple_repeat 2 31 0 8 1273 218 182 0 0 chr3 90269830 90269874 -69329909 + G-rich Low_complexity Low_complexity 1 44 0 8 1273 187 343 45 0 chr3 90270669 90270736 -69329047 - L2b LINE L2 -10 3365 3296 8 1273 21 0 0 0 chr3 90270736 90270757 -69329026 + AT_rich Low_complexity Low_complexity 1 21 0 8 1273 672 202 11 40 chr3 90270926 90271061 -69328722 + B3A SINE B2 1 137 -58 8 1273 270 0 0 0 chr3 90271061 90271091 -69328692 + (TC)n Simple_repeat Simple_repeat 1 30 0 8 1273 231 36 0 0 chr3 90271091 90271118 -69328665 + (CA)n Simple_repeat Simple_repeat 1 28 0 8 1273 524 277 56 56 chr3 90271118 90271176 -69328607 + B2_Mm2 SINE B2 138 194 -1 8 1273 347 0 0 23 chr3 90271301 90271345 -69328438 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 8 1273 1199 62 0 0 chr3 90271345 90271490 -69328293 - B1_Mus1 SINE Alu -2 146 2 8 1273 426 231 103 25 chr3 90271492 90271675 -69328108 - B3A SINE B2 -21 195 1 8 1273 324 0 0 0 chr3 90271696 90271732 -69328051 + (TG)n Simple_repeat Simple_repeat 1 36 0 8 1273 668 288 6 24 chr3 90271732 90271899 -69327884 - B3A SINE B2 -34 164 1 8 1273 208 309 85 0 chr3 90272303 90272397 -69327386 - L2b LINE L2 -971 2448 2347 8 1273 1042 96 127 0 chr3 90272470 90272636 -69327147 - B2_Mm1t SINE B2 -5 188 2 8 1273 24 0 0 0 chr3 90273767 90273791 -69325992 + AT_rich Low_complexity Low_complexity 1 24 0 8 1273 5850 76 13 1 chr3 90273791 90274556 -69325227 + L1_Mus3 LINE L1 5865 6638 0 8 1273 931 178 28 11 chr3 90274556 90274732 -69325051 - B2_Mm2 SINE B2 -14 181 3 8 1273 300 87 0 0 chr3 90274977 90274990 -69324793 + (A)n Simple_repeat Simple_repeat 1 13 0 8 1273 1226 48 0 0 chr3 90274990 90275137 -69324646 + B1_Mus2 SINE Alu 1 147 0 8 1273 300 87 0 0 chr3 90275137 90275169 -69324614 + (A)n Simple_repeat Simple_repeat 1 32 0 8 1273 2100 245 102 59 chr3 90275176 90276892 -69322891 + Lx5 LINE L1 5358 7398 -62 8 1273 1118 68 7 20 chr3 90276982 90277131 -69322652 - B1_Mus1 SINE Alu 0 148 2 8 1273 849 115 15 30 chr3 90277131 90277265 -69322518 + B1_Mur3 SINE Alu 18 149 0 8 1273 214 104 61 20 chr3 90277265 90277314 -69322469 + (CAAAC)n Simple_repeat Simple_repeat 4 54 0 8 1273 515 289 6 144 chr3 90277403 90277577 -69322206 + RSINE1 SINE B4 16 165 0 8 1273 260 164 53 27 chr3 90277577 90277652 -69322131 + A-rich Low_complexity Low_complexity 5 81 0 8 1273 382 258 45 75 chr3 90277663 90277797 -69321986 + B1F2 SINE Alu 5 134 -15 8 1273 1122 185 5 38 chr3 90277943 90278156 -69321627 - B3 SINE B2 -10 206 1 8 1273 321 47 0 0 chr3 90278169 90278212 -69321571 + (TTA)n Simple_repeat Simple_repeat 2 44 0 8 1273 800 145 0 16 chr3 90278212 90278338 -69321445 - B1_Mus1 SINE Alu -12 136 13 8 1273 381 230 8 137 chr3 90278235 90278366 -69321417 - MT2B LTR ERVL -337 264 151 8 1273 240 246 31 47 chr3 90278433 90278497 -69321286 - B3 SINE B2 -153 63 1 8 1273 206 204 0 0 chr3 90278501 90278514 -69321269 + A-rich Low_complexity Low_complexity 2 14 0 8 1273 976 96 91 48 chr3 90278514 90278700 -69321083 + B2_Mm2 SINE B2 2 195 0 8 1273 206 204 0 0 chr3 90278700 90278730 -69321053 + A-rich Low_complexity Low_complexity 15 44 0 8 1273 607 248 29 0 chr3 90278798 90278935 -69320848 - B1_Mur1 SINE Alu -5 144 4 8 1273 444 322 102 7 chr3 90278982 90279129 -69320654 - RSINE1 SINE B4 0 165 5 8 1273 959 82 40 5 chr3 90279295 90279448 -69320335 + B1_Mus2 SINE Alu 30 311 0 8 1273 277 286 28 37 chr3 90279576 90279685 -69320098 + B1F1 SINE Alu 42 149 0 8 1273 667 14 0 0 chr3 90279779 90279853 -69319930 - tRNA-Met-i tRNA tRNA -1 74 1 8 1273 221 234 31 0 chr3 90280660 90280724 -69319059 + PB1D10 SINE Alu 1 66 -51 8 1273 391 263 70 42 chr3 90281393 90281536 -69318247 - B1F1 SINE Alu 0 149 3 8 1273 219 283 0 36 chr3 90281562 90281617 -69318166 - ID4_ SINE ID -10 73 21 8 1273 24 32 0 0 chr3 90281618 90281649 -69318134 + AT_rich Low_complexity Low_complexity 1 31 0 8 1273 406 339 54 6 chr3 90281689 90281855 -69317928 + B3 SINE B2 40 213 -3 8 1273 384 154 62 52 chr3 90281908 90282004 -69317779 + PB1D7 SINE Alu 24 120 0 8 1273 400 224 81 10 chr3 90282104 90282203 -69317580 - PB1D9 SINE Alu -2 118 13 8 1273 346 238 0 36 chr3 90282130 90282213 -69317570 - MT2B LTR ERVL -355 246 167 8 1273 345 138 25 0 chr3 90282253 90282331 -69317452 - B1_Mur4 SINE Alu -1 149 39 8 1273 621 220 133 32 chr3 90282348 90282536 -69317247 - B3 SINE B2 -9 207 1 8 1273 282 29 0 0 chr3 90282547 90282582 -69317201 + (TG)n Simple_repeat Simple_repeat 2 36 0 8 1273 496 245 0 9 chr3 90282582 90282689 -69317094 - PB1D9 SINE Alu -13 107 2 8 1273 671 251 94 15 chr3 90282725 90282927 -69316856 + ID_B1 SINE B4 3 220 -4 8 1273 1328 99 0 59 chr3 90283051 90283080 -69316703 - B2_Mm2 SINE B2 -2 193 167 8 1273 1070 95 0 33 chr3 90283080 90283232 -69316551 + B1_Mus2 SINE Alu 1 147 0 8 1273 1328 99 0 59 chr3 90283232 90283406 -69316377 - B2_Mm2 SINE B2 -29 166 2 8 1273 991 179 78 5 chr3 90283441 90283632 -69316151 - B3 SINE B2 -11 205 1 8 1273 22 35 0 0 chr3 90283632 90283661 -69316122 + AT_rich Low_complexity Low_complexity 1 29 0 8 1273 712 280 102 56 chr3 90283668 90283865 -69315918 - B3 SINE B2 -10 206 1 8 1273 327 270 172 57 chr3 90283902 90284024 -69315759 - RSINE1 SINE B4 -14 151 16 8 1273 275 303 98 0 chr3 90284028 90284124 -69315659 - PB1D10 SINE Alu 0 117 13 8 1273 561 140 0 61 chr3 90284183 90284282 -69315501 - B1_Mur4 SINE Alu 0 150 58 8 1273 1077 120 31 52 chr3 90284282 90284475 -69315308 - B2_Mm2 SINE B2 -6 189 1 8 1273 535 265 19 125 chr3 90285578 90285627 -69314156 - B2_Mm2 SINE B2 0 195 153 8 1273 738 34 0 0 chr3 90285627 90285716 -69314067 + (TATATG)n Simple_repeat Simple_repeat 4 92 0 9 1273 903 218 13 6 chr3 90285716 90285882 -69313901 - B3 SINE B2 -26 172 3 8 1273 591 252 0 8 chr3 90286020 90286140 -69313643 - PB1D9 SINE Alu -1 119 1 8 1273 501 219 57 0 chr3 90286180 90286285 -69313498 + PB1D9 SINE Alu 10 120 0 9 1273 1177 123 17 11 chr3 90286457 90286638 -69313145 + B2_Mm2 SINE B2 7 188 -7 9 1273 361 306 61 10 chr3 90286902 90287001 -69312782 - PB1D7 SINE Alu -8 112 9 9 1273 1394 70 38 0 chr3 90287008 90287194 -69312589 - B2_Mm1t SINE B2 0 193 1 9 1273 270 0 0 0 chr3 90287258 90287288 -69312495 + (TG)n Simple_repeat Simple_repeat 1 30 0 9 1273 244 292 14 0 chr3 90287288 90287360 -69312423 - ID4_ SINE ID -10 73 1 9 1273 344 204 54 67 chr3 90287500 90287618 -69312165 + B1F2 SINE Alu 12 115 -2 9 1273 430 195 56 53 chr3 90287644 90287757 -69312026 + PB1D10 SINE Alu 1 117 0 9 1273 507 307 43 19 chr3 90287761 90287970 -69311813 + ID_B1 SINE B4 3 216 -8 9 1273 1297 27 0 0 chr3 90288003 90288151 -69311632 + B1_Mus1 SINE Alu 1 148 0 9 1273 528 274 0 0 chr3 90288167 90288269 -69311514 + RSINE1 SINE B4 28 129 -36 9 1273 478 214 194 23 chr3 90288674 90288803 -69310980 - RLTR20A2 LTR ERVK -12 566 416 9 1273 467 216 10 10 chr3 90288779 90288877 -69310906 - RLTR20A2 LTR ERVK -277 291 194 9 1273 309 125 209 45 chr3 90288912 90288979 -69310804 - RLTR20A2 LTR ERVK -456 78 1 9 1273 1184 50 0 0 chr3 90289047 90289187 -69310596 + B1_Mus1 SINE Alu 2 141 -7 9 1273 1043 72 14 7 chr3 90289213 90289353 -69310430 + B2_Mm2 SINE B2 24 164 -31 9 1273 192 152 0 0 chr3 90289846 90289879 -69309904 + (TA)n Simple_repeat Simple_repeat 1 33 0 9 1273 306 253 92 46 chr3 90289906 90289993 -69309790 - RSINE1 SINE B4 -63 102 12 9 1273 242 257 40 0 chr3 90290211 90290285 -69309498 + ID4_ SINE ID 4 80 -3 9 1273 764 181 45 8 chr3 90290341 90290475 -69309308 - B1_Mm SINE Alu 0 147 9 9 1273 341 308 84 84 chr3 90290348 90290490 -69309293 - B4 SINE B4 -72 220 79 9 1273 186 133 0 0 chr3 90291454 90291484 -69308299 + (GGA)n Simple_repeat Simple_repeat 2 31 0 9 1273 295 266 42 11 chr3 90292088 90292183 -69307600 + MTEb LTR MaLR 110 207 -172 9 1273 23 33 0 0 chr3 90292271 90292301 -69307482 + AT_rich Low_complexity Low_complexity 1 30 0 9 1273 882 228 39 24 chr3 90292534 90292741 -69307042 - B3 SINE B2 -5 211 2 9 1273 492 219 25 34 chr3 90293077 90293195 -69306588 + PB1D10 SINE Alu 1 117 0 9 1273 282 299 64 64 chr3 90293581 90293599 -69306184 - RLTR25B LTR ERVK -489 539 496 9 1273 458 143 117 0 chr3 90293599 90293676 -69306107 - B1_Mus2 SINE Alu -21 126 41 9 1273 282 299 64 64 chr3 90293676 90293706 -69306077 - RLTR25B LTR ERVK -489 495 415 9 1273 481 237 98 15 chr3 90293906 90294039 -69305744 - B1F1 SINE Alu -5 144 1 9 1273 200 35 35 0 chr3 90294042 90294071 -69305712 + (TTA)n Simple_repeat Simple_repeat 2 31 0 9 1273 1087 65 0 13 chr3 90295142 90295297 -69304486 + (TTTC)n Simple_repeat Simple_repeat 4 156 0 9 1273 225 132 0 0 chr3 90295299 90295337 -69304446 + (TTC)n Simple_repeat Simple_repeat 1 38 0 9 1273 967 127 60 50 chr3 90295338 90295520 -69304263 - B2_Mm2 SINE B2 -1 194 11 9 1273 225 0 0 0 chr3 90295626 90295651 -69304132 + (T)n Simple_repeat Simple_repeat 1 25 0 9 1273 514 113 311 0 chr3 90295681 90295787 -69303996 - B1_Mus1 SINE Alu -5 143 5 9 1273 416 286 0 74 chr3 90295812 90295831 -69303952 - PB1D10 SINE Alu -3 114 56 9 1273 317 301 25 186 chr3 90295831 90295875 -69303908 - ID_B1 SINE B4 -48 176 140 9 1273 5176 35 0 0 chr3 90295875 90296474 -69303309 - L1Md_T LINE L1 0 6582 5984 9 1273 416 286 0 74 chr3 90296474 90296531 -69303252 - PB1D10 SINE Alu -62 55 3 9 1273 317 301 25 186 chr3 90296531 90296633 -69303150 - ID_B1 SINE B4 -85 139 6 9 1273 360 255 30 30 chr3 90296661 90296762 -69303021 - B1F SINE Alu -7 142 42 9 1273 656 242 36 54 chr3 90296820 90296986 -69302797 - RSINE1 SINE B4 0 165 3 9 1273 398 298 105 18 chr3 90297001 90297172 -69302611 - B3A SINE B2 -5 193 8 9 1273 571 198 90 90 chr3 90297215 90297393 -69302390 - B3A SINE B2 -17 181 4 9 1273 2058 68 0 0 chr3 90297506 90297758 -69302025 - L1Md_F2 LINE L1 -229 6353 6102 9 1273 355 281 106 35 chr3 90297765 90297858 -69301925 + L1MB3 LINE L1 5867 5971 -212 9 1273 249 263 25 50 chr3 90297858 90297938 -69301845 + ID4 SINE ID 2 79 -4 9 1273 355 281 106 35 chr3 90297938 90298014 -69301769 + L1MB3 LINE L1 5972 6047 -136 9 1273 250 114 91 0 chr3 90298096 90298140 -69301643 - B1F SINE Alu -7 142 95 9 1273 352 271 134 38 chr3 90298133 90298290 -69301493 - LTR41 LTR ERVL -120 648 477 9 1273 449 255 146 57 chr3 90298352 90298564 -69301219 - LTR41 LTR ERVL -515 253 23 9 1273 401 258 0 0 chr3 90298574 90298663 -69301120 - B1_Mur3 SINE Alu -9 140 52 9 1273 666 145 97 22 chr3 90298741 90298875 -69300908 + B1_Mur3 SINE Alu 2 145 -4 9 1273 297 0 0 0 chr3 90298902 90298935 -69300848 + (CAAA)n Simple_repeat Simple_repeat 4 36 0 9 1273 889 160 79 46 chr3 90300445 90300661 -69299122 + URR1B DNA MER1_type 3 225 0 9 1273 250 277 84 0 chr3 90301108 90301191 -69298592 - MurSatRep1 Unknown Unknown -1852 285 196 9 1273 270 0 0 0 chr3 90301656 90301686 -69298097 + (A)n Simple_repeat Simple_repeat 1 30 0 9 1273 411 284 69 0 chr3 90301722 90301838 -69297945 + B3 SINE B2 82 205 -11 9 1273 224 284 176 0 chr3 90301916 90301990 -69297793 - B1F SINE Alu -43 106 20 9 1273 493 215 136 15 chr3 90302645 90302777 -69297006 - B1_Mus1 SINE Alu 0 148 1 9 1273 204 40 0 0 chr3 90303797 90303822 -69295961 + (CAGG)n Simple_repeat Simple_repeat 1 25 0 9 1273 347 244 47 0 chr3 90304284 90304336 -69295447 - PB1D10 SINE Alu -9 108 53 9 1273 777 189 263 0 chr3 90304336 90304511 -69295272 + ID_B1 SINE B4 2 222 -2 9 1273 347 244 47 0 chr3 90304511 90304544 -69295239 - PB1D10 SINE Alu -65 52 20 9 1273 362 185 30 15 chr3 90305459 90305525 -69294258 - tRNA-Ala-GCY_ tRNA tRNA -8 67 1 9 1273 297 299 39 0 chr3 90305585 90305662 -69294121 - ID4 SINE ID -2 81 2 9 1273 252 311 66 26 chr3 90306650 90306726 -69293057 - ID4_ SINE ID 0 83 5 9 1273 290 263 92 0 chr3 90308325 90308401 -69291382 - ID4_ SINE ID 0 83 1 9 1274 396 276 90 41 chr3 90308645 90308781 -69291002 + B1_Mur1 SINE Alu 6 147 -2 9 1274 180 0 0 0 chr3 90309150 90309170 -69290613 + (CAAAC)n Simple_repeat Simple_repeat 2 21 0 9 1274 398 250 0 0 chr3 90309646 90309726 -69290057 - BC1_Mm scRNA scRNA -57 95 16 9 1274 715 194 0 15 chr3 90311675 90311811 -69287972 + B1_Mur4 SINE Alu 2 135 -15 9 1274 189 347 57 48 chr3 90312025 90312149 -69287634 + MER5B DNA MER1_type 51 175 -3 9 1274 354 224 25 38 chr3 90312167 90312246 -69287537 + ID4_ SINE ID 1 78 -5 9 1274 308 259 11 34 chr3 90312474 90312562 -69287221 + PB1D10 SINE Alu 23 108 -9 9 1274 244 239 122 40 chr3 90312585 90312659 -69287124 + ID2 SINE ID 4 83 0 9 1274 256 248 17 60 chr3 90312984 90313100 -69286683 + C-rich Low_complexity Low_complexity 5 115 0 9 1274 387 192 9 147 chr3 90313793 90313909 -69285874 - PB1D9 SINE Alu 0 120 21 9 1274 513 223 8 59 chr3 90313920 90314039 -69285744 - MT2A LTR ERVL -361 172 60 9 1274 196 85 0 60 chr3 90314113 90314163 -69285620 + (TTTTTG)n Simple_repeat Simple_repeat 2 48 0 9 1274 1090 70 0 0 chr3 90314163 90314306 -69285477 - B1_Mus1 SINE Alu 0 148 6 9 1274 702 221 0 65 chr3 90314313 90314468 -69285315 - B1_Mur2 SINE Alu -4 145 1 9 1274 1563 43 0 16 chr3 90314477 90314665 -69285118 - B2_Mm1t SINE B2 -8 185 1 9 1274 333 221 58 0 chr3 90314680 90314766 -69285017 - PB1D10 SINE Alu -2 115 25 9 1274 1616 53 0 0 chr3 90315434 90315624 -69284159 + B2_Mm1t SINE B2 1 190 -3 9 1274 423 225 38 98 chr3 90315747 90315880 -69283903 + ID_B1 SINE B4 75 199 -25 9 1274 641 165 0 28 chr3 90315774 90315880 -69283903 + B1_Mur1 SINE Alu 19 121 -28 9 1274 350 270 62 104 chr3 90315880 90315985 -69283798 + MT2B LTR ERVL 183 384 -217 9 1274 279 300 149 8 chr3 90316678 90316799 -69282984 - B1F SINE Alu -1 148 11 9 1274 183 289 37 62 chr3 90316866 90316947 -69282836 - L3 LINE CR1 -1587 2902 2824 9 1274 312 27 0 0 chr3 90320110 90320147 -69279636 + (TG)n Simple_repeat Simple_repeat 1 37 0 9 1274 423 208 93 65 chr3 90320341 90320449 -69279334 + PB1D10 SINE Alu 1 111 -6 9 1274 785 200 21 0 chr3 90320683 90320823 -69278960 + B1_Mm SINE Alu 3 145 -2 9 1274 412 226 51 17 chr3 90320834 90320958 -69278825 - PB1D7 SINE Alu -27 122 2 9 1274 1074 69 150 6 chr3 90321001 90321161 -69278622 - B2_Mm2 SINE B2 -9 186 4 9 1274 421 238 65 180 chr3 90321187 90321374 -69278409 - B3 SINE B2 -14 202 50 9 1274 726 150 80 29 chr3 90321374 90321511 -69278272 + B1_Mus2 SINE Alu 2 145 -2 9 1274 762 325 188 36 chr3 90321630 90322376 -69277407 + L2 LINE L2 1043 1901 -1518 9 1274 973 148 48 21 chr3 90322401 90322587 -69277196 - B2_Mm2 SINE B2 -4 191 1 9 1274 1704 26 0 0 chr3 90322604 90322796 -69276987 - B2_Mm1a SINE B2 0 193 2 9 1274 345 47 0 0 chr3 90323055 90323098 -69276685 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 9 1274 944 208 38 5 chr3 90323113 90323297 -69276486 - B3 SINE B2 -24 192 3 9 1274 487 268 0 26 chr3 90323298 90323413 -69276370 - PB1D10 SINE Alu 0 117 6 9 1274 237 368 0 0 chr3 90323355 90323423 -69276360 - B4 SINE B4 -144 148 81 9 1274 677 177 14 0 chr3 90323428 90323569 -69276214 + CT-rich Low_complexity Low_complexity 2 144 0 9 1274 288 208 60 0 chr3 90323574 90323647 -69276136 - B1_Mur4 SINE Alu -5 145 36 9 1274 494 238 19 9 chr3 90323683 90323789 -69275994 - B1F SINE Alu -21 128 22 1 1274 234 325 25 25 chr3 90323728 90323807 -69275976 - B4A SINE B4 -125 167 89 1 1274 501 17 0 0 chr3 90323844 90323902 -69275881 + (TCTA)n Simple_repeat Simple_repeat 4 61 0 1 1274 648 248 27 7 chr3 90323908 90324054 -69275729 - B1F1 SINE Alu 0 149 1 1 1274 458 263 114 0 chr3 90324172 90324286 -69275497 + MER21B LTR ERV1 689 815 -48 1 1274 751 235 12 8 chr3 90324283 90324442 -69275341 + ID_B1 SINE B4 79 237 -55 1 1274 448 226 92 35 chr3 90324491 90324633 -69275150 - RMER5 LTR ERV1 0 534 385 1 1274 802 286 21 0 chr3 90324674 90324863 -69274920 - ID_B1 SINE B4 -31 193 1 1 1274 807 174 34 20 chr3 90324872 90325019 -69274764 - B1_Mur3 SINE Alu 0 149 1 1 1274 548 230 151 46 chr3 90325024 90325243 -69274540 - RMER5 LTR ERV1 -138 396 155 1 1274 1204 61 0 0 chr3 90325247 90325394 -69274389 + B1_Mus2 SINE Alu 1 147 0 1 1274 261 83 0 0 chr3 90325394 90325430 -69274353 + (A)n Simple_repeat Simple_repeat 1 36 0 1 1274 1176 89 0 0 chr3 90325499 90325679 -69274104 + (GGA)n Simple_repeat Simple_repeat 1 180 0 1 1274 310 208 68 27 chr3 90325680 90325754 -69274029 + PB1D10 SINE Alu 39 115 -2 1 1274 2524 83 3 12 chr3 90325886 90326216 -69273567 - ORR1A2 LTR MaLR 0 327 1 1 1274 560 14 14 0 chr3 90326241 90326310 -69273473 + (TTCC)n Simple_repeat Simple_repeat 3 72 0 1 1274 640 231 182 52 chr3 90326378 90326570 -69273213 - ID_B1 SINE B4 -5 219 3 1 1274 315 276 28 9 chr3 90326581 90326687 -69273096 - PB1D10 SINE Alu -9 108 1 1 1274 774 231 118 0 chr3 90326791 90326977 -69272806 + B3 SINE B2 4 211 -5 1 1274 489 163 0 0 chr3 90326978 90327070 -69272713 + GA-rich Low_complexity Low_complexity 1 92 0 1 1274 195 361 57 85 chr3 90327070 90327176 -69272607 + MIRm SINE MIR 40 142 -134 1 1274 218 306 14 166 chr3 90327219 90327364 -69272419 - L2a LINE L2 -5 3421 3299 1 1274 228 292 69 132 chr3 90327496 90327569 -69272214 - L3 LINE CR1 -866 3623 3547 1 1274 794 239 73 19 chr3 90327569 90327774 -69272009 + B3 SINE B2 1 216 0 1 1274 228 292 69 132 chr3 90327774 90328032 -69271751 - L3 LINE CR1 -943 3546 3314 1 1274 801 43 389 7 chr3 90328515 90328654 -69271129 - B2_Mm1t SINE B2 -1 192 1 1 1274 223 267 9 82 chr3 90328807 90328917 -69270866 - BC1_Mm scRNA scRNA -46 106 5 1 1274 316 202 219 21 chr3 90329229 90329325 -69270458 - PB1D10 SINE Alu -2 115 1 1 1274 240 290 203 24 chr3 90333073 90333302 -69266481 + MIR SINE MIR 5 256 -6 1 1274 770 251 88 105 chr3 90333307 90333726 -69266057 - RMER10A LTR ERVL -19 423 12 1 1274 808 246 86 125 chr3 90333729 90334335 -69265448 - RMER17C-int LTR ERVK -76 3162 2627 1 1274 1295 20 0 0 chr3 90334345 90334491 -69265292 - B1_Mus2 SINE Alu 0 147 2 1 1274 456 279 67 37 chr3 90334495 90334517 -69265266 - B4A SINE B4 -70 222 86 1 1274 610 136 0 72 chr3 90334517 90334628 -69265155 - B1_Mur4 SINE Alu -47 103 1 1 1274 291 182 9 170 chr3 90334534 90334640 -69265143 - MT2B2 LTR ERVL -344 240 152 1 1274 312 165 10 115 chr3 90334669 90334765 -69265018 - RLTR19-int LTR ERVK -2628 3509 3424 1 1274 3976 102 97 23 chr3 90334876 90334995 -69264788 - Lx LINE L1 -5 6649 6535 1 1274 180 0 0 0 chr3 90334995 90335015 -69264768 + (CCCA)n Simple_repeat Simple_repeat 2 21 0 1 1274 3976 102 97 23 chr3 90335015 90335557 -69264226 - Lx LINE L1 -120 6534 5941 1 1274 285 239 11 43 chr3 90335567 90335659 -69264124 - RLTR19-int LTR ERVK -2859 3278 3190 1 1274 629 213 53 106 chr3 90335880 90336106 -69263677 - RLTR19-int LTR ERVK -3063 3074 2861 1 1274 182 246 0 76 chr3 90336207 90336273 -69263510 - L4 LINE RTE -1818 211 151 1 1274 1056 201 73 158 chr3 90336285 90336709 -69263074 - RLTR19-int LTR ERVK -3440 2697 2065 1 1274 494 176 514 0 chr3 90336718 90336860 -69262923 - B3 SINE B2 0 216 2 1 1274 656 160 0 44 chr3 90336870 90337007 -69262776 - RLTR19-int LTR ERVK -3462 2060 1930 1 1274 418 176 27 73 chr3 90337000 90337110 -69262673 - RLTR19-int LTR ERVK -3548 1974 1870 1 1274 1267 40 0 0 chr3 90337347 90337495 -69262288 - B1_Mus1 SINE Alu 0 148 1 1 1274 255 303 0 0 chr3 90337562 90337628 -69262155 - RLTR19-int LTR ERVK -3658 1864 1799 1 1274 562 245 110 88 chr3 90337678 90337906 -69261877 - RLTR19-int LTR ERVK -3730 1792 1560 1 1274 440 55 0 0 chr3 90337926 90337981 -69261802 - ORR1A4 LTR MaLR 0 326 272 1 1274 1062 83 0 0 chr3 90338049 90338182 -69261601 - B1_Mus1 SINE Alu -15 133 1 1 1274 1850 118 10 41 chr3 90338184 90338475 -69261308 - ORR1A4 LTR MaLR -46 283 2 1 1274 1046 144 15 39 chr3 90338565 90338768 -69261015 - RMER1B Other Other -6 1060 863 1 1274 395 230 9 0 chr3 90339967 90340080 -69259703 + (TA)n Simple_repeat Simple_repeat 2 115 0 1 1274 579 288 52 113 chr3 90340109 90340551 -69259232 - RMER10A LTR ERVL -8 434 20 1 1274 324 0 0 0 chr3 90340553 90340589 -69259194 + (TG)n Simple_repeat Simple_repeat 2 37 0 1 1274 216 0 0 0 chr3 90342174 90342198 -69257585 + (TG)n Simple_repeat Simple_repeat 2 25 0 1 1274 218 275 21 21 chr3 90342543 90342636 -69257147 + (TGAA)n Simple_repeat Simple_repeat 2 94 0 1 1274 270 0 0 0 chr3 90343949 90343979 -69255804 + (GA)n Simple_repeat Simple_repeat 1 30 0 1 1274 387 0 0 0 chr3 90345575 90345618 -69254165 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 1274 246 326 33 11 chr3 90347213 90347303 -69252480 + PB1D10 SINE Alu 1 92 -25 1 1274 779 207 21 0 chr3 90347751 90347896 -69251887 - B1_Mur1 SINE Alu 0 149 2 1 1274 26 30 0 0 chr3 90348029 90348062 -69251721 + AT_rich Low_complexity Low_complexity 1 33 0 1 1274 5339 215 109 30 chr3 90348066 90348666 -69251117 - Lx6 LINE L1 -14 7446 6753 1 1274 687 84 0 0 chr3 90348666 90348761 -69251022 + (CCTG)n Simple_repeat Simple_repeat 1 95 0 1 1274 1044 70 0 0 chr3 90348762 90348904 -69250879 + (TCTA)n Simple_repeat Simple_repeat 2 143 0 1 1274 5339 215 109 30 chr3 90348904 90349545 -69250238 - Lx6 LINE L1 -708 6752 6104 1 1274 8790 154 28 110 chr3 90349542 90350328 -69249455 - Lx6 LINE L1 -107 5773 5026 1 1274 1402 57 5 58 chr3 90350328 90350534 -69249249 - B2_Mm2 SINE B2 0 195 1 1 1274 8790 154 28 110 chr3 90350534 90350965 -69248818 - Lx6 LINE L1 -855 5025 4573 1 1274 883 182 109 31 chr3 90350965 90351158 -69248625 + B3 SINE B2 1 208 -8 1 1274 222 37 0 0 chr3 90351159 90351186 -69248597 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 1274 8790 154 28 110 chr3 90351186 90351975 -69247808 - Lx6 LINE L1 -1308 4572 3929 1 1274 603 277 6 49 chr3 90352201 90352364 -69247419 - ID_B1 SINE B4 -5 219 64 1 1274 290 243 53 13 chr3 90352372 90352447 -69247336 - L1MA5 LINE L1 -15 6285 6208 1 1274 619 160 11 0 chr3 90352540 90352634 -69247149 + U6 snRNA snRNA 1 95 -12 1 1274 540 45 0 0 chr3 90352638 90352705 -69247078 + (CA)n Simple_repeat Simple_repeat 2 68 0 1 1274 2821 170 55 32 chr3 90352784 90353313 -69246470 + RLTR20A LTR ERVK 1 541 0 1 1274 243 218 0 0 chr3 90353422 90353477 -69246306 + CT-rich Low_complexity Low_complexity 3 57 0 1 1274 328 164 0 0 chr3 90353554 90353609 -69246174 - L1M3 LINE L1 -2777 3363 3309 1 1274 318 261 206 0 chr3 90353637 90353729 -69246054 - PB1D7 SINE Alu -5 115 5 1 1274 322 146 0 0 chr3 90353961 90354009 -69245774 - B3 SINE B2 -167 49 2 1 1274 310 267 55 11 chr3 90354010 90354101 -69245682 + L2 LINE L2 2792 2886 -533 1 1274 581 219 13 99 chr3 90354260 90354412 -69245371 + B3 SINE B2 53 191 -25 1 1274 368 280 32 0 chr3 90354804 90354897 -69244886 - BC1_Mm scRNA scRNA -51 101 6 1 1274 363 242 113 66 chr3 90354917 90355023 -69244760 - PB1D10 SINE Alu -9 111 1 1 1274 1748 194 107 5 chr3 90355272 90355645 -69244138 - MTD LTR MaLR -8 411 1 1 1274 1272 165 198 26 chr3 90355686 90355880 -69243903 - RMER17C LTR ERVK -2 408 198 1 1274 915 61 24 29 chr3 90355880 90356050 -69243733 + (GAGAA)n Simple_repeat Simple_repeat 5 173 0 1 1274 1272 165 198 26 chr3 90356050 90356061 -69243722 - RMER17C LTR ERVK -213 197 172 1 1274 387 0 0 0 chr3 90356061 90356104 -69243679 + (TG)n Simple_repeat Simple_repeat 1 43 0 1 1274 1272 165 198 26 chr3 90356104 90356245 -69243538 - RMER17C LTR ERVK -239 171 4 1 1274 404 204 32 54 chr3 90356309 90356402 -69243381 + B1F1 SINE Alu 1 91 -58 1 1274 1041 230 0 18 chr3 90356533 90356750 -69243033 - B3 SINE B2 0 216 4 1 1274 238 261 101 11 chr3 90356771 90356860 -69242923 + B1F SINE Alu 3 99 -50 1 1274 466 198 102 19 chr3 90356860 90356968 -69242815 - B1F2 SINE Alu -18 131 15 1 1274 235 192 36 131 chr3 90356895 90356979 -69242804 - MT2B2 LTR ERVL -344 240 165 1 1274 567 183 43 0 chr3 90357079 90357194 -69242589 + ORR1C1 LTR MaLR 1 120 -258 1 1274 438 20 0 0 chr3 90357194 90357245 -69242538 + (TG)n Simple_repeat Simple_repeat 2 52 0 1 1274 521 148 0 0 chr3 90357247 90357328 -69242455 + ORR1C1 LTR MaLR 242 322 -56 1 1274 694 148 128 38 chr3 90357359 90357478 -69242305 + B1_Mus2 SINE Alu 2 135 -12 1 1274 351 0 0 0 chr3 90357478 90357517 -69242266 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 1 1274 694 148 128 38 chr3 90357517 90357530 -69242253 + B1_Mus2 SINE Alu 136 146 -1 1 1274 375 109 0 0 chr3 90357572 90357627 -69242156 + ORR1C1 LTR MaLR 324 378 0 1 1274 360 78 25 25 chr3 90358107 90358186 -69241597 + (CAAA)n Simple_repeat Simple_repeat 2 80 0 1 1274 4420 199 87 5 chr3 90358211 90359187 -69240596 + ORR1C1-int LTR MaLR 8 1063 -446 1 1274 700 314 132 13 chr3 90359276 90359372 -69240411 + MER2 DNA MER2_type 4 120 -225 1 1274 234 0 0 0 chr3 90359372 90359398 -69240385 + (TTA)n Simple_repeat Simple_repeat 3 28 0 1 1274 700 314 132 13 chr3 90359398 90359604 -69240179 + MER2 DNA MER2_type 121 341 -4 1 1274 324 263 189 10 chr3 90359938 90360134 -69239649 - HAL1b LINE L1 -580 1429 1199 1 1274 563 234 81 0 chr3 90360704 90360828 -69238955 + ID_B1 SINE B4 82 215 -9 1 1274 378 243 215 0 chr3 90361282 90361426 -69238357 + MER70A LTR ERVL 296 470 -2 1 1274 531 135 0 0 chr3 90361471 90361545 -69238238 - B2_Mm2 SINE B2 -121 74 1 1 1274 204 40 0 0 chr3 90361545 90361570 -69238213 + (CCCCCA)n Simple_repeat Simple_repeat 6 30 0 1 1274 1347 172 70 4 chr3 90361692 90361949 -69237834 + RLTR14 LTR ERV1 11 284 -98 1 1274 848 153 30 18 chr3 90361950 90362116 -69237667 + RMER1B Other Other 896 1063 -3 1 1274 487 125 25 12 chr3 90362117 90362198 -69237585 + RLTR14 LTR ERV1 246 327 -55 1 1274 2973 184 92 64 chr3 90362196 90362856 -69236927 - RMER19B LTR ERVK -219 683 5 1 1274 187 265 114 57 chr3 90362928 90363016 -69236767 - L4 LINE RTE -646 1383 1291 1 1274 900 241 5 10 chr3 90363050 90363255 -69236528 - B3 SINE B2 -12 204 1 1 1274 27 0 0 0 chr3 90363256 90363283 -69236500 + AT_rich Low_complexity Low_complexity 1 27 0 1 1274 563 271 0 52 chr3 90363500 90363636 -69236147 - ID_B1 SINE B4 -8 216 88 1 1274 180 259 0 0 chr3 90363656 90363737 -69236046 + CT-rich Low_complexity Low_complexity 2 82 0 1 1274 240 232 125 0 chr3 90363738 90363794 -69235989 - ID4_ SINE ID -18 65 3 1 1274 600 167 124 7 chr3 90364477 90364622 -69235161 - U1 snRNA snRNA -1 164 3 1 1274 790 234 6 17 chr3 90364684 90364862 -69234921 - B3A SINE B2 -18 180 5 1 1274 482 226 17 34 chr3 90365007 90365126 -69234657 - PB1D10 SINE Alu 0 117 1 1 1274 200 310 17 0 chr3 90365139 90365197 -69234586 + CT-rich Low_complexity Low_complexity 2 60 0 1 1274 484 324 36 72 chr3 90365209 90365432 -69234351 - ID_B1 SINE B4 0 224 10 1 1274 704 217 43 0 chr3 90365494 90365632 -69234151 - ID_B1 SINE B4 -1 223 80 1 1274 227 341 23 54 chr3 90365600 90365730 -69234053 - MT2B LTR ERVL -314 287 162 1 1274 258 329 66 0 chr3 90366020 90366096 -69233687 - ID4_ SINE ID 0 83 3 1 1274 226 167 0 40 chr3 90366566 90366616 -69233167 + GA-rich Low_complexity Low_complexity 1 48 0 1 1274 779 227 101 9 chr3 90366850 90367068 -69232715 - RCHARR1 DNA MER1_type 0 974 737 1 1274 5970 167 45 38 chr3 90367074 90368208 -69231575 - Lx9 LINE L1 -7 7637 6496 1 1274 267 198 87 122 chr3 90368208 90368241 -69231542 - RCHARR1 DNA MER1_type -211 763 733 1 1274 459 0 0 0 chr3 90368241 90368292 -69231491 + (TC)n Simple_repeat Simple_repeat 2 52 0 1 1274 807 178 0 29 chr3 90368292 90368431 -69231352 - B1_Mur2 SINE Alu -12 137 3 1 1274 267 198 87 122 chr3 90368431 90368511 -69231272 - RCHARR1 DNA MER1_type -242 732 654 1 1274 4241 259 62 45 chr3 90368554 90369548 -69230235 - Lx8 LINE L1 -18 7455 6449 1 1274 2246 159 5 14 chr3 90369548 90369918 -69229865 - ORR1B2 LTR MaLR 0 367 1 1 1274 4241 259 62 45 chr3 90369918 90370142 -69229641 - Lx8 LINE L1 -1025 6448 6217 1 1274 578 210 169 0 chr3 90370244 90370368 -69229415 - B1F2 SINE Alu 0 149 5 1 1274 411 56 0 0 chr3 90370391 90370445 -69229338 + (CA)n Simple_repeat Simple_repeat 1 54 0 1 1274 325 250 0 27 chr3 90370505 90370579 -69229204 - ID_B1 SINE B4 -6 218 147 1 1274 413 81 0 16 chr3 90370592 90370655 -69229128 + (TTCTCC)n Simple_repeat Simple_repeat 4 65 0 1 1274 1108 124 13 9 chr3 90370655 90370850 -69228933 - B2_Mm1t SINE B2 -1 194 1 1 1274 444 202 0 12 chr3 90370850 90370903 -69228880 - ID_B1 SINE B4 -96 128 77 1 1274 245 299 29 15 chr3 90370903 90370971 -69228812 - ID4_ SINE ID -10 73 5 1 1274 546 169 14 84 chr3 90370975 90370993 -69228790 - RCHARR1 DNA MER1_type -463 511 499 1 1274 677 194 49 35 chr3 90370993 90371137 -69228646 - B1_Mus2 SINE Alu 0 147 2 1 1274 546 169 14 84 chr3 90371137 90371260 -69228523 - RCHARR1 DNA MER1_type -476 498 380 1 1274 888 256 25 25 chr3 90371260 90371456 -69228327 + B3A SINE B2 3 198 0 1 1274 866 236 167 40 chr3 90371458 90371758 -69228025 - RCHARR1 DNA MER1_type -598 376 39 1 1274 369 0 0 0 chr3 90372118 90372159 -69227624 + (TC)n Simple_repeat Simple_repeat 1 41 0 1 1274 461 273 100 0 chr3 90372160 90372270 -69227513 - ID_B1 SINE B4 -20 204 84 1 1274 814 203 93 31 chr3 90372382 90372575 -69227208 - B3 SINE B2 -10 206 2 1 1274 431 287 0 0 chr3 90372771 90372872 -69226911 + MLT1K LTR MaLR 152 252 -343 1 1274 13707 82 2 13 chr3 90372914 90375586 -69224197 - L1_Mus1 LINE L1 0 6654 3939 1 1274 1982 56 127 20 chr3 90375596 90375888 -69223895 - ORR1A2 LTR MaLR -4 323 1 1 1274 765 270 85 0 chr3 90375992 90376181 -69223602 - ID_B1 SINE B4 0 224 20 1 1274 650 188 102 0 chr3 90376190 90376318 -69223465 - B1_Mus1 SINE Alu -6 142 2 1 1274 667 324 75 25 chr3 90376400 90376682 -69223101 - ORR1E LTR MaLR -12 347 52 1 1274 241 338 0 51 chr3 90376690 90376768 -69223015 - BC1_Mm scRNA scRNA -68 84 11 1 1274 4499 149 88 77 chr3 90376769 90377643 -69222140 + RMER19B LTR ERVK 1 884 -18 1 1274 1143 88 70 0 chr3 90377644 90377815 -69221968 + B2_Mm2 SINE B2 2 184 -11 1 1274 325 293 102 68 chr3 90377885 90377913 -69221870 - B2_Mm1t SINE B2 -11 182 158 1 1274 486 33 0 0 chr3 90377913 90377973 -69221810 + (TG)n Simple_repeat Simple_repeat 2 61 0 1 1274 599 207 93 21 chr3 90377973 90378120 -69221663 - B3A SINE B2 -36 157 1 1 1274 778 208 21 0 chr3 90378142 90378286 -69221497 + B1_Mur1 SINE Alu 2 148 -1 1 1274 698 250 65 5 chr3 90378330 90378515 -69221268 - B3A SINE B2 -2 196 1 1 1274 374 247 0 0 chr3 90379660 90379737 -69220046 + ID4 SINE ID 3 79 -4 1 1274 320 273 0 0 chr3 90379996 90380062 -69219721 + ID4_ SINE ID 10 75 -8 1 1274 339 277 71 0 chr3 90380717 90380827 -69218956 + B1F1 SINE Alu 1 124 -3 1 1274 207 216 0 0 chr3 90380857 90380894 -69218889 + A-rich Low_complexity Low_complexity 2 38 0 1 1274 499 163 0 0 chr3 90381102 90381194 -69218589 - Lx3C LINE L1 -11 6965 6874 1 1274 549 99 94 47 chr3 90381198 90381304 -69218479 + Lx3B LINE L1 6761 6871 -102 1 1274 250 293 0 0 chr3 90381640 90381698 -69218085 - ID2 SINE ID -14 69 12 1 1274 575 319 67 64 chr3 90382141 90382499 -69217284 + ORR1E LTR MaLR 1 359 0 1 1274 850 245 33 29 chr3 90382505 90382715 -69217068 + ORR1E-int LTR MaLR 24 234 -1346 1 1274 486 228 25 58 chr3 90382727 90382848 -69216935 + ID_B1 SINE B4 108 224 0 1 1274 3917 290 56 39 chr3 90382885 90384107 -69215676 + ORR1E-int LTR MaLR 223 1465 -115 1 1274 4619 98 11 199 chr3 90384149 90385002 -69214781 - RMER17A2 LTR ERVK 0 906 248 1 1274 440 0 0 35 chr3 90385002 90385059 -69214724 + (TAAA)n Simple_repeat Simple_repeat 3 57 0 1 1274 4619 98 11 199 chr3 90385059 90385321 -69214462 - RMER17A2 LTR ERVK -659 247 1 1 1274 224 216 31 10 chr3 90385325 90385423 -69214360 + (TA)n Simple_repeat Simple_repeat 1 100 0 1 1274 917 268 31 41 chr3 90385425 90385717 -69214066 - B4A SINE B4 0 292 4 1 1274 250 250 0 118 chr3 90385718 90385786 -69213997 + ORR1E-int LTR MaLR 1448 1507 -73 1 1274 969 264 70 81 chr3 90385805 90386164 -69213619 + ORR1E LTR MaLR 1 355 -4 1 1274 819 176 188 0 chr3 90386189 90386365 -69213418 - B3 SINE B2 -7 209 1 1 1274 257 130 295 48 chr3 90386392 90386497 -69213286 + RMER15 LTR ERVL 2 132 -443 1 1274 438 292 58 14 chr3 90386524 90386663 -69213120 + RMER15 LTR ERVL 275 419 -156 1 1274 192 135 0 0 chr3 90387222 90387259 -69212524 + (TCTA)n Simple_repeat Simple_repeat 2 38 0 1 1274 712 241 104 30 chr3 90387450 90387651 -69212132 + B3 SINE B2 1 216 0 1 1274 261 308 27 45 chr3 90388775 90388887 -69210896 + MIRb SINE MIR 113 222 -46 1 1274 1347 47 0 12 chr3 90389043 90389215 -69210568 + B2_Mm2 SINE B2 1 170 -25 1 1274 195 42 0 0 chr3 90391652 90391676 -69208107 + (CG)n Simple_repeat Simple_repeat 2 25 0 1 1274 405 0 0 0 chr3 90391676 90391720 -69208063 + (CA)n Simple_repeat Simple_repeat 1 45 0 1 1274 2328 83 211 0 chr3 90391881 90392217 -69207566 - MTB_Mm LTR MaLR 0 407 1 1 1274 1415 94 11 0 chr3 90392822 90393013 -69206770 + B2_Mm1t SINE B2 1 193 0 1 1274 330 320 39 0 chr3 90393044 90393147 -69206636 + PB1D10 SINE Alu 1 107 -10 1 1274 1140 88 0 0 chr3 90395604 90395751 -69204032 - B1_Mus1 SINE Alu 0 148 2 1 1274 772 199 0 22 chr3 90395860 90395999 -69203784 + B1_Mur3 SINE Alu 1 136 -13 1 1274 708 45 0 0 chr3 90395999 90396087 -69203696 + (CAAGA)n Simple_repeat Simple_repeat 1 88 0 1 1274 287 125 42 0 chr3 90396099 90396147 -69203636 + PB1D9 SINE Alu 6 55 -65 1 1274 339 169 0 0 chr3 90396147 90396218 -69203565 + G-rich Low_complexity Low_complexity 4 74 0 1 1274 363 44 0 0 chr3 90396373 90396418 -69203365 + (TGGGGG)n Simple_repeat Simple_repeat 3 47 0 1 1274 448 366 25 25 chr3 90396512 90396750 -69203033 - MLT1F-int LTR MaLR -1051 336 99 1 1274 462 294 114 22 chr3 90396975 90397190 -69202593 - MLT1F LTR MaLR -2 678 357 1 1274 2823 139 7 7 chr3 90397200 90397621 -69202162 + MTC LTR MaLR 1 421 0 1 1274 363 96 0 0 chr3 90397911 90397963 -69201820 + (CACCAT)n Simple_repeat Simple_repeat 4 55 0 1 1274 324 0 0 0 chr3 90398313 90398349 -69201434 + (TG)n Simple_repeat Simple_repeat 2 37 0 1 1274 288 304 33 74 chr3 90398368 90398489 -69201294 + MLT1G3 LTR MaLR 180 295 -300 1 1274 240 321 74 19 chr3 90398795 90398903 -69200880 - MIRb SINE MIR -52 216 103 1 1274 234 340 0 30 chr3 90399930 90400030 -69199753 - PB1D10 SINE Alu -16 101 5 1 1274 326 278 22 24 chr3 90400239 90400340 -69199443 + B3A SINE B2 4 112 -83 1 1274 795 236 0 0 chr3 90401410 90401550 -69198233 - B1_Mur1 SINE Alu -8 141 2 1 1274 379 248 8 117 chr3 90401442 90401570 -69198213 - MT2B LTR ERVL -338 263 150 1 1274 414 194 95 18 chr3 90401821 90401973 -69197810 + L2a LINE L2 3163 3382 -44 1 1274 220 286 41 0 chr3 90402005 90402054 -69197729 + MIRc SINE MIR 71 121 -147 1 1274 448 262 116 29 chr3 90402056 90402229 -69197554 - MIR SINE MIR -10 252 65 1 1274 186 43 0 0 chr3 90402567 90402590 -69197193 + (T)n Simple_repeat Simple_repeat 1 23 0 1 1274 936 158 7 33 chr3 90402776 90402927 -69196856 + B1_Mur3 SINE Alu 3 149 0 1 1274 908 215 20 51 chr3 90402940 90403136 -69196647 + B3A SINE B2 3 192 -6 1 1274 215 263 53 0 chr3 90403731 90403807 -69195976 + MIR3 SINE MIR 117 196 -12 1 1274 272 263 108 12 chr3 90405166 90405252 -69194531 - MIRb SINE MIR -94 174 81 1 1274 186 43 0 0 chr3 90407858 90407881 -69191902 + (TG)n Simple_repeat Simple_repeat 2 24 0 1 1274 225 0 0 0 chr3 90407901 90407926 -69191857 + (A)n Simple_repeat Simple_repeat 1 25 0 1 1274 305 292 108 97 chr3 90408147 90408184 -69191599 - B3A SINE B2 -10 188 1 1 1274 691 247 7 20 chr3 90408184 90408333 -69191450 - RSINE1 SINE B4 -17 148 2 1 1274 243 227 0 0 chr3 90410102 90410168 -69189615 + (TG)n Simple_repeat Simple_repeat 2 67 0 1 1274 282 256 25 37 chr3 90410578 90410590 -69189193 - ID_B1 SINE B4 -56 168 158 1 1274 711 35 0 0 chr3 90410590 90410676 -69189107 + (TC)n Simple_repeat Simple_repeat 1 86 0 1 1274 282 256 25 37 chr3 90410676 90410744 -69189039 - ID_B1 SINE B4 -67 157 89 1 1274 1470 50 11 0 chr3 90410835 90411017 -69188766 - B2_Mm1t SINE B2 -8 185 2 1 1274 279 232 41 55 chr3 90412637 90412710 -69187073 + PB1D10 SINE Alu 32 103 -14 1 1274 531 0 0 0 chr3 90413525 90413584 -69186199 + (CA)n Simple_repeat Simple_repeat 2 60 0 1 1274 667 167 0 50 chr3 90414616 90414736 -69185047 - B1_Mur4 SINE Alu -2 148 35 1 1274 1225 127 91 24 chr3 90416450 90416660 -69183123 + URR1B DNA MER1_type 1 224 -1 1 1274 778 186 14 21 chr3 90420082 90420225 -69179558 + B1_Mur1 SINE Alu 3 144 -5 1 1274 234 0 0 0 chr3 90420236 90420262 -69179521 + (GGGTG)n Simple_repeat Simple_repeat 4 29 0 1 1274 537 286 0 26 chr3 90421152 90421170 -69178613 + ID_B1 SINE B4 77 223 -1 1 1274 947 128 0 0 chr3 90421170 90421303 -69178480 + B1_Mus1 SINE Alu 15 147 -1 1 1274 228 289 49 62 chr3 90421178 90421322 -69178461 - YREP_Mm Unknown Unknown -1517 295 154 1 1274 234 0 0 0 chr3 90421324 90421350 -69178433 + (CAA)n Simple_repeat Simple_repeat 2 27 0 1 1274 749 286 6 25 chr3 90421409 90421567 -69178216 + RSINE1 SINE B4 11 165 0 1 1274 248 355 88 73 chr3 90421567 90421613 -69178170 + B3 SINE B2 10 216 0 1 1274 308 271 130 36 chr3 90421619 90421802 -69177981 + B3A SINE B2 8 214 -2 1 1274 604 300 112 9 chr3 90421830 90422062 -69177721 - MER21B LTR ERV1 -318 545 290 1 1274 474 284 103 34 chr3 90422041 90422245 -69177538 - ID_B1 SINE B4 -4 220 3 1 1274 607 261 179 5 chr3 90422245 90422374 -69177409 - MER21B LTR ERV1 -605 258 96 1 1274 1879 149 24 42 chr3 90422378 90422715 -69177068 - MTC LTR MaLR -9 412 82 1 1274 313 250 28 0 chr3 90422682 90422754 -69177029 + B3 SINE B2 138 211 -5 1 1274 422 286 0 0 chr3 90422763 90422861 -69176922 + PB1D9 SINE Alu 4 101 -19 1 1274 3467 84 26 4 chr3 90422861 90423328 -69176455 + L1Md_F2 LINE L1 6105 6581 -1 1 1274 24 0 0 0 chr3 90423469 90423493 -69176290 + AT_rich Low_complexity Low_complexity 1 24 0 1 1274 1509 59 16 0 chr3 90423498 90423684 -69176099 + B2_Mm2 SINE B2 1 189 -6 1 1274 355 291 122 47 chr3 90423701 90423802 -69175981 - L1M5 LINE L1 -1520 4626 4510 1 1274 809 211 14 0 chr3 90423802 90423949 -69175834 - B1_Mur3 SINE Alu 0 149 1 1 1274 355 291 122 47 chr3 90423949 90423995 -69175788 - L1M5 LINE L1 -1637 4509 4468 1 1274 332 356 97 35 chr3 90424028 90424287 -69175496 - ORR1E LTR MaLR -6 353 79 1 1274 340 304 123 6 chr3 90424830 90424995 -69174788 + L1M5 LINE L1 5500 5681 -483 1 1274 538 293 0 14 chr3 90425133 90425275 -69174508 + B1F SINE Alu 1 140 -9 1 1274 420 285 18 103 chr3 90425918 90425947 -69173836 - CYRA11_Mm Unknown Y-chromosome -249 368 222 1 1274 1017 132 27 60 chr3 90425947 90426132 -69173651 + URR1A DNA MER1_type 46 224 -2 1 1274 1059 130 37 32 chr3 90426293 90426483 -69173300 - MTB_Mm LTR MaLR -215 192 2 1 1274 837 294 108 14 chr3 90426549 90426994 -69172789 + L1MB7 LINE L1 5631 6117 -67 1 1274 401 278 0 11 chr3 90426994 90427085 -69172698 + B3 SINE B2 1 90 -126 1 1274 495 151 0 0 chr3 90427162 90427235 -69172548 - B1F1 SINE Alu -7 142 70 1 1274 336 235 0 56 chr3 90427235 90427252 -69172531 - ID_B1 SINE B4 -7 217 133 1 1274 589 191 57 0 chr3 90428568 90428709 -69171074 + B1F SINE Alu 1 149 0 1 1274 241 266 161 15 chr3 90428835 90428965 -69170818 + MIRb SINE MIR 120 268 0 1 1274 483 276 60 90 chr3 90431168 90431335 -69168448 + B4 SINE B4 63 224 -68 1 1274 495 229 83 0 chr3 90431336 90431445 -69168338 + Lx9 LINE L1 7059 7176 -468 1 1274 654 294 112 35 chr3 90431447 90431732 -69168051 - RMER5 LTR ERV1 -202 332 26 1 1274 212 240 0 0 chr3 90432276 90432326 -69167457 + CT-rich Low_complexity Low_complexity 1 50 0 1 1274 229 278 26 53 chr3 90433327 90433403 -69166380 + L2b LINE L2 3277 3350 -25 1 1274 238 262 16 32 chr3 90435175 90435238 -69164545 + MLT1K LTR MaLR 191 252 -343 1 1274 483 216 160 51 chr3 90435686 90435842 -69163941 - MLT1A1 LTR MaLR 0 408 236 1 1274 312 327 52 48 chr3 90435842 90436073 -69163710 - Lx8 LINE L1 -11 7462 7231 1 1274 510 301 15 0 chr3 90436147 90436283 -69163500 - Lx8 LINE L1 -246 7227 7090 1 1274 1133 217 9 19 chr3 90436787 90437003 -69162780 + B3 SINE B2 1 214 -2 1 1274 10087 72 28 1 chr3 90437438 90439550 -69160233 + L1VL4 LINE L1 124 2298 -1261 1 159 4075 127 6 13 chr3 90439551 90440179 -69159604 + Lx2 LINE L1 6374 6997 0 1 1275 322 239 21 64 chr3 90440304 90440398 -69159385 + B4A SINE B4 118 207 -85 1 1275 237 304 12 37 chr3 90440431 90440513 -69159270 + B4 SINE B4 212 291 -1 1 1275 198 71 0 0 chr3 90441155 90441183 -69158600 + (TTCC)n Simple_repeat Simple_repeat 2 29 0 1 1275 384 119 0 0 chr3 90441177 90441236 -69158547 + (TCC)n Simple_repeat Simple_repeat 2 60 0 1 1275 1001 136 0 11 chr3 90441260 90441438 -69158345 + (TTTC)n Simple_repeat Simple_repeat 4 179 0 1 1275 788 180 79 0 chr3 90441488 90441627 -69158156 - B1_Mur4 SINE Alu 0 150 1 1 1275 287 316 98 68 chr3 90441680 90441843 -69157940 - MLT1L LTR MaLR -266 344 177 1 1275 823 262 85 9 chr3 90442525 90442783 -69157000 + B4A SINE B4 5 284 -8 1 1275 440 35 0 17 chr3 90442836 90442895 -69156888 + (CA)n Simple_repeat Simple_repeat 1 58 0 1 1275 398 306 0 35 chr3 90443528 90443643 -69156140 + ID_B1 SINE B4 79 189 -35 1 1275 609 209 0 0 chr3 90443540 90443645 -69156138 + B1F2 SINE Alu 9 113 -36 1 1275 463 245 0 0 chr3 90443897 90443995 -69155788 - ID_B1 SINE B4 -42 182 85 1 1275 659 245 73 6 chr3 90444183 90444347 -69155436 - Lx7 LINE L1 -395 7301 7127 1 1275 735 137 0 8 chr3 90444349 90444467 -69155316 - B3 SINE B2 -98 118 2 1 1275 508 292 23 0 chr3 90444582 90444712 -69155071 - ID_B1 SINE B4 -10 214 82 1 1275 258 297 0 39 chr3 90444729 90444806 -69154977 - ID_B1 SINE B4 -72 152 79 1 1275 2221 101 29 50 chr3 90446757 90447133 -69152650 - RLTR9A LTR ERVK 0 368 1 1 1275 222 193 0 0 chr3 90447673 90447730 -69152053 + CT-rich Low_complexity Low_complexity 1 57 0 1 1275 205 183 16 32 chr3 90447797 90447834 -69151949 + (TTTA)n Simple_repeat Simple_repeat 3 40 0 1 1275 630 184 44 0 chr3 90447834 90447948 -69151835 - PB1D9 SINE Alu 0 120 2 1 1275 205 183 16 32 chr3 90447948 90447972 -69151811 + (TTTA)n Simple_repeat Simple_repeat 4 26 0 1 1275 733 236 71 0 chr3 90448015 90448197 -69151586 - B3 SINE B2 -13 203 9 1 1275 522 216 72 0 chr3 90448224 90448349 -69151434 - B3 SINE B2 -1 215 82 1 1275 329 258 113 89 chr3 90448391 90448604 -69151179 - B4 SINE B4 -69 223 6 1 1275 275 262 135 34 chr3 90448610 90448847 -69150936 + HAL1 LINE L1 809 1069 -1438 1 1275 1553 243 68 62 chr3 90448910 90449414 -69150369 + Lx6 LINE L1 6954 7460 0 1 1275 242 114 0 0 chr3 90450022 90450057 -69149726 - ORR1D1 LTR MaLR -339 35 1 1 1275 584 211 83 0 chr3 90450243 90450376 -69149407 + B1_Mur2 SINE Alu 1 144 -5 1 1275 798 258 40 85 chr3 90450733 90451096 -69148687 - Lx9 LINE L1 -1115 6529 6053 1 1275 180 361 26 53 chr3 90452683 90452835 -69146948 - MIRm SINE MIR -93 183 36 1 1275 1176 264 126 13 chr3 90453767 90454227 -69145556 - L1MA5A LINE L1 -401 5896 5385 1 1275 657 168 8 16 chr3 90454253 90454380 -69145403 - B1_Mur4 SINE Alu -13 137 12 1 1275 478 310 77 8 chr3 90454521 90454755 -69145028 - L1MA5A LINE L1 -942 5201 4952 1 1275 810 208 64 38 chr3 90454743 90454973 -69144810 - L1_Mur3 LINE L1 -1313 4570 4349 1 1275 1108 80 0 0 chr3 90454973 90455111 -69144672 + B1_Mus2 SINE Alu 1 138 -9 1 1275 243 0 0 0 chr3 90455111 90455138 -69144645 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 1275 626 176 62 97 chr3 90455138 90455209 -69144574 - L1_Mur3 LINE L1 -1535 4348 4331 1 1275 250 272 17 34 chr3 90455202 90455320 -69144463 - L1_Mur3 LINE L1 -3878 2002 1887 1 1275 442 285 64 6 chr3 90455331 90455504 -69144279 - L1_Mur1 LINE L1 -4158 1728 1546 1 1275 540 0 0 0 chr3 90455973 90456033 -69143750 + (TC)n Simple_repeat Simple_repeat 1 60 0 1 1275 414 0 0 0 chr3 90457248 90457294 -69142489 + (TG)n Simple_repeat Simple_repeat 1 46 0 1 1275 243 0 0 0 chr3 90457294 90457320 -69142463 + (GA)n Simple_repeat Simple_repeat 1 27 0 1 1275 333 346 106 43 chr3 90457493 90457843 -69141940 + L2b LINE L2 3004 3375 0 1 1275 305 282 45 18 chr3 90458494 90458606 -69141177 + MIRb SINE MIR 86 200 -68 1 1275 180 0 0 0 chr3 90461357 90461377 -69138406 + (T)n Simple_repeat Simple_repeat 1 20 0 1 1275 420 230 44 83 chr3 90461962 90462142 -69137641 + MT2B LTR ERVL 85 257 -344 1 1275 1039 37 0 0 chr3 90462050 90462184 -69137599 + B1_Mm SINE Alu 11 144 -3 1 1275 265 295 54 54 chr3 90465056 90465185 -69134598 + MIR SINE MIR 132 260 -2 1 1275 434 265 0 10 chr3 90465662 90465761 -69134022 - B1F1 SINE Alu -51 98 1 1 1275 21 0 0 0 chr3 90465761 90465782 -69134001 + AT_rich Low_complexity Low_complexity 1 21 0 1 1275 515 259 14 21 chr3 90465782 90465924 -69133859 - Lx8 LINE L1 -724 6749 6609 1 1275 1811 279 80 31 chr3 90465924 90466085 -69133698 + Lx8 LINE L1 6841 7021 -452 1 1275 2064 182 69 0 chr3 90466085 90466474 -69133309 + MTD LTR MaLR 3 418 -1 1 1275 1811 279 80 31 chr3 90466474 90466916 -69132867 + Lx8 LINE L1 7022 7473 0 1 1275 642 212 80 88 chr3 90466910 90466974 -69132809 + Lx8 LINE L1 7238 7297 -176 1 1275 240 35 0 0 chr3 90466974 90467003 -69132780 + (CA)n Simple_repeat Simple_repeat 2 30 0 1 1275 642 212 80 88 chr3 90467003 90467176 -69132607 + Lx8 LINE L1 7298 7473 0 1 1275 23 54 0 0 chr3 90467208 90467245 -69132538 + AT_rich Low_complexity Low_complexity 1 37 0 1 1275 4476 236 30 39 chr3 90467309 90468441 -69131342 + Lx5 LINE L1 5404 6504 -546 1 1275 429 20 0 0 chr3 90468441 90468491 -69131292 + (CAG)n Simple_repeat Simple_repeat 1 50 0 1 1275 4476 273 32 61 chr3 90468491 90469015 -69130768 + Lx5 LINE L1 6505 7031 -19 1 1275 456 19 0 0 chr3 90469082 90469135 -69130648 + (GA)n Simple_repeat Simple_repeat 1 53 0 1 1275 1633 218 91 15 chr3 90469144 90469540 -69130243 - Lx7 LINE L1 -358 7338 6913 1 1275 826 261 176 5 chr3 90469584 90469981 -69129802 - L1MB2 LINE L1 -8 6163 5699 1 1275 2574 143 3 0 chr3 90469994 90470365 -69129418 - Lx4A LINE L1 -94 6964 6593 1 1275 369 306 45 114 chr3 90470365 90470640 -69129143 - L1MB2 LINE L1 -491 5692 5458 1 1275 558 0 0 0 chr3 90470640 90470702 -69129081 + (TC)n Simple_repeat Simple_repeat 1 62 0 1 1275 369 306 45 114 chr3 90470702 90470898 -69128885 - L1MB2 LINE L1 -726 5457 5254 1 1275 955 306 72 44 chr3 90471144 90471170 -69128613 - MTEa LTR MaLR -7 372 353 1 1275 1362 42 0 0 chr3 90471170 90471408 -69128375 + (CCA)n Simple_repeat Simple_repeat 1 238 0 1 1275 955 306 72 44 chr3 90471408 90471740 -69128043 - MTEa LTR MaLR -27 352 1 1 1275 253 289 39 8 chr3 90471850 90471996 -69127787 + MIRc SINE MIR 63 217 -51 1 1275 540 0 0 0 chr3 90472580 90472640 -69127143 + (CAGTT)n Simple_repeat Simple_repeat 4 63 0 1 1275 225 188 42 0 chr3 90474327 90474375 -69125408 + GA-rich Low_complexity Low_complexity 2 51 0 1 1275 48 18 0 0 chr3 90474691 90474746 -69125037 + AT_rich Low_complexity Low_complexity 1 55 0 1 1275 3591 262 40 30 chr3 90474879 90475908 -69123875 - Lx9 LINE L1 -171 7473 6435 1 1275 1948 211 25 7 chr3 90475917 90476323 -69123460 - MTD LTR MaLR -5 414 2 1 1275 3861 226 93 73 chr3 90476324 90476905 -69122878 - MTD-int LTR MaLR 0 1258 686 1 1275 3422 37 2 2 chr3 90476905 90477312 -69122471 - L1Md_F2 LINE L1 -3 6579 6173 1 1275 3861 226 93 73 chr3 90477312 90477945 -69121838 - MTD-int LTR MaLR -573 685 20 1 1275 2109 192 29 10 chr3 90477950 90478361 -69121422 - MTD LTR MaLR 0 419 1 1 1275 1374 224 32 5 chr3 90478439 90478788 -69120995 - Lx9 LINE L1 -1686 5958 5566 1 1275 989 302 36 59 chr3 90478799 90479437 -69120346 + RLTR18B LTR ERVK 13 614 -2 1 1275 1969 206 68 20 chr3 90479448 90479890 -69119893 - Lx9 LINE L1 -275 5572 5110 1 1275 29 0 0 0 chr3 90480179 90480208 -69119575 + AT_rich Low_complexity Low_complexity 1 29 0 1 1275 250 348 0 0 chr3 90480286 90480355 -69119428 - B4 SINE B4 -209 83 15 1 1275 408 261 71 9 chr3 90480606 90480718 -69119065 + RSINE1 SINE B4 40 158 -7 1 1275 501 17 0 0 chr3 90482275 90482333 -69117450 + (TC)n Simple_repeat Simple_repeat 1 58 0 1 1275 273 314 82 48 chr3 90483584 90483731 -69116052 - MIRb SINE MIR -69 199 48 1 1275 928 303 54 18 chr3 90484748 90485081 -69114702 + MER70-int LTR ERVL 4640 4984 -39 1 1275 462 290 182 30 chr3 90485106 90485369 -69114414 + MER70B LTR ERVL 165 467 -111 1 1275 461 269 109 6 chr3 90486361 90486544 -69113239 - L1MC3 LINE L1 -37 7748 7547 1 1275 3638 29 60 4 chr3 90488620 90489070 -69110713 - IAPLTR2_Mm LTR ERVK 0 475 1 1 1275 1099 200 54 0 chr3 90489108 90489313 -69110470 + B3 SINE B2 1 216 0 1 1275 478 165 10 10 chr3 90490450 90490554 -69109229 + GA-rich Low_complexity Low_complexity 3 106 0 1 1275 385 314 80 33 chr3 90492918 90493298 -69106485 - MT2A LTR ERVL -72 461 78 1 1275 243 0 0 0 chr3 90496050 90496077 -69103706 + (TG)n Simple_repeat Simple_repeat 1 27 0 1 1275 759 102 0 0 chr3 90496077 90496204 -69103579 + (GA)n Simple_repeat Simple_repeat 1 128 0 1 1275 27 29 0 0 chr3 90498300 90498334 -69101449 + AT_rich Low_complexity Low_complexity 1 34 0 1 1275 1134 88 0 0 chr3 90498334 90498482 -69101301 - B1_Mus1 SINE Alu 0 148 1 1 1275 716 102 22 14 chr3 90498486 90498614 -69101169 + (TCTA)n Simple_repeat Simple_repeat 2 131 0 1 1275 879 75 0 0 chr3 90498614 90498734 -69101049 + (TTC)n Simple_repeat Simple_repeat 3 122 0 1 1275 716 102 22 14 chr3 90498734 90498744 -69101039 + (TCTA)n Simple_repeat Simple_repeat 4 13 0 1 1275 432 279 46 0 chr3 90500612 90500785 -69098998 - L1MA4 LINE L1 -320 5992 5803 1 1275 180 0 0 0 chr3 90500785 90500805 -69098978 + (TTTC)n Simple_repeat Simple_repeat 2 21 0 2 1275 4319 74 70 0 chr3 90500810 90501839 -69097944 - L1_Mus1 LINE L1 0 6567 5467 3 1275 656 278 146 11 chr3 90501845 90502125 -69097658 - L1MA4 LINE L1 -503 5794 5477 1 1275 582 54 0 0 chr3 90502126 90502200 -69097583 + (TTTTC)n Simple_repeat Simple_repeat 3 76 0 4 1275 367 200 107 62 chr3 90502222 90502334 -69097449 - PB1D9 SINE Alu 0 120 4 5 1275 582 271 109 8 chr3 90502338 90502660 -69097123 - L1MA4 LINE L1 -815 5485 5126 1 1275 787 244 71 0 chr3 90502741 90502938 -69096845 - ID_B1 SINE B4 -5 219 9 6 1275 892 257 19 19 chr3 90503382 90503640 -69096143 - L1_Rod LINE L1 -117 5730 5473 7 1275 993 277 65 59 chr3 90503634 90504160 -69095623 - L1MA4 LINE L1 -1368 4775 4247 1 1275 313 250 8 8 chr3 90504169 90504294 -69095489 + (TG)n Simple_repeat Simple_repeat 2 126 0 8 1275 270 281 0 0 chr3 90504325 90504439 -69095344 + (TG)n Simple_repeat Simple_repeat 1 114 0 8 1275 298 246 122 65 chr3 90504445 90504513 -69095270 - B4A SINE B4 0 292 231 9 1275 492 146 91 0 chr3 90504513 90504623 -69095160 - Lx2A1 LINE L1 -3 7005 6886 1 1275 298 246 122 65 chr3 90504623 90504693 -69095090 - B4A SINE B4 -62 230 146 9 1275 374 228 63 0 chr3 90504705 90504784 -69094999 - B4A SINE B4 -207 85 2 9 1275 279 230 58 39 chr3 90504792 90504896 -69094887 - L1M2 LINE L1 -1333 4810 4705 1 1275 231 211 0 0 chr3 90504963 90505015 -69094768 - L1M2 LINE L1 -1459 4681 4630 1 1275 5452 31 12 0 chr3 90505143 90505781 -69094002 - L1Md_F3 LINE L1 0 6584 5939 1 1275 4624 125 17 0 chr3 90506389 90507087 -69092696 + Lx2 LINE L1 6288 6997 0 1 1275 908 161 339 21 chr3 90507106 90507386 -69092397 - L1_Rod LINE L1 -2343 3504 3136 1 1275 6553 169 33 92 chr3 90507354 90507799 -69091984 - L1_Rod LINE L1 -3024 2823 2381 1 1275 4126 97 71 3 chr3 90507799 90508421 -69091362 - Lx2A1 LINE L1 0 7008 6345 1 1275 6553 169 33 92 chr3 90508421 90508660 -69091123 - L1_Rod LINE L1 -3467 2380 2210 1 1275 918 157 61 17 chr3 90508660 90508841 -69090942 - Lx4B LINE L1 -7 7051 6863 1 1275 6553 171 47 73 chr3 90508841 90510111 -69089672 - L1_Rod LINE L1 -3638 2209 940 1 1275 2273 245 93 85 chr3 90510111 90511205 -69088578 - RLTR25A LTR ERVK 0 1103 1 1 1275 1846 261 25 11 chr3 90511205 90511681 -69088102 - L1_Rod LINE L1 -6663 945 463 1 1275 25 31 0 0 chr3 90512727 90512759 -69087024 + AT_rich Low_complexity Low_complexity 1 32 0 1 1275 1102 254 75 4 chr3 90513643 90513908 -69085875 + RMER1A Other Other 89 372 -658 1 1275 3925 205 77 6 chr3 90513908 90514712 -69085071 + RMER1A Other Other 170 1030 0 2 1275 21 0 0 0 chr3 90514902 90514923 -69084860 + AT_rich Low_complexity Low_complexity 1 21 0 2 1275 6105 96 40 0 chr3 90514923 90515795 -69083988 - Lx2 LINE L1 0 6997 6091 2 1275 16057 143 36 15 chr3 90515795 90518628 -69081155 - L1_Mur2 LINE L1 -272 5605 2715 2 1275 3356 63 6 25 chr3 90518636 90519245 -69080538 - L1VL4 LINE L1 -2224 1335 739 2 1275 696 12 0 0 chr3 90519245 90519326 -69080457 + (TTTC)n Simple_repeat Simple_repeat 1 81 0 2 1275 724 101 8 16 chr3 90519336 90519457 -69080326 + (TTCTCC)n Simple_repeat Simple_repeat 3 122 0 2 1275 35971 67 6 8 chr3 90520049 90526014 -69073769 - L1Md_F2 LINE L1 0 6585 610 2 1275 243 114 0 0 chr3 90526253 90526297 -69073486 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 2 1275 2223 192 54 17 chr3 90527604 90527818 -69071965 - L1VL4 LINE L1 -5557 745 529 2 1275 474 49 0 0 chr3 90527818 90527879 -69071904 + (TC)n Simple_repeat Simple_repeat 1 61 0 2 1275 2223 192 54 17 chr3 90527879 90528125 -69071658 - L1VL4 LINE L1 -5774 528 269 2 1275 558 235 61 0 chr3 90528126 90528241 -69071542 - B1_Mus2 SINE Alu -25 122 1 3 1275 352 238 0 36 chr3 90528292 90528375 -69071408 - RSINE1 SINE B4 0 165 86 3 1275 980 90 0 0 chr3 90528679 90528813 -69070970 - B1_Mus1 SINE Alu -5 143 10 3 1275 584 215 7 40 chr3 90528813 90528827 -69070956 - ID_B1 SINE B4 -3 219 77 3 1275 367 270 48 39 chr3 90528966 90529174 -69070609 - Charlie1a DNA MER1_type -267 1188 979 3 1275 261 0 0 0 chr3 90530186 90530215 -69069568 + (TG)n Simple_repeat Simple_repeat 1 29 0 3 1275 426 39 0 0 chr3 90530574 90530626 -69069157 + (CA)n Simple_repeat Simple_repeat 2 53 0 3 1275 241 321 137 0 chr3 90531061 90531192 -69068591 + MIRb SINE MIR 111 259 -9 3 1275 5238 2 0 0 chr3 90533343 90533911 -69065872 - L1Md_A LINE L1 0 6582 6015 3 1275 290 340 49 64 chr3 90533956 90534220 -69065563 + LTR16E2 LTR ERVL 276 535 -33 3 1275 1420 198 75 7 chr3 90534959 90535254 -69064529 - Lx5 LINE L1 0 7050 6736 4 1275 909 277 108 21 chr3 90535516 90535848 -69063935 - MTE2b LTR MaLR -4 375 15 4 1275 708 45 0 0 chr3 90535928 90536016 -69063767 + (TC)n Simple_repeat Simple_repeat 1 88 0 4 1275 201 292 35 28 chr3 90537222 90537363 -69062420 - L2a LINE L2 -77 3349 3208 4 1275 857 285 5 18 chr3 90537539 90537757 -69062026 - B3 SINE B2 0 216 2 4 1275 807 88 0 0 chr3 90537771 90537884 -69061899 + (TTCC)n Simple_repeat Simple_repeat 1 113 0 4 1275 304 164 16 0 chr3 90537895 90537956 -69061827 - RMER15 LTR ERVL -109 466 405 4 1275 949 46 0 0 chr3 90537979 90538088 -69061695 - L1_Mus2 LINE L1 -338 6228 6120 4 1275 2688 45 12 3 chr3 90538088 90538423 -69061360 + L1_Mus2 LINE L1 6228 6565 -1 4 1275 1156 80 98 6 chr3 90538442 90538606 -69061177 + B2_Mm2 SINE B2 2 180 -15 4 1275 441 0 0 0 chr3 90538610 90538659 -69061124 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 4 1275 744 85 0 0 chr3 90538723 90538841 -69060942 + (CA)n Simple_repeat Simple_repeat 1 118 0 5 1275 486 0 0 0 chr3 90538841 90538894 -69060889 + (GA)n Simple_repeat Simple_repeat 2 55 0 5 1275 263 102 20 39 chr3 90538902 90538953 -69060830 - RMER15 LTR ERVL -446 129 80 4 1275 204 67 0 0 chr3 90539324 90539354 -69060429 + (T)n Simple_repeat Simple_repeat 1 30 0 5 1275 226 340 19 0 chr3 90539750 90539856 -69059927 + CT-rich Low_complexity Low_complexity 4 111 0 5 1275 3135 75 13 33 chr3 90539898 90540352 -69059431 - L1Md_F2 LINE L1 0 6582 6138 5 1275 1168 123 67 0 chr3 90540411 90540590 -69059193 + B2_Mm2 SINE B2 1 191 -4 5 1275 204 324 40 0 chr3 90540765 90540839 -69058944 - MER91B DNA Tip100 0 190 114 5 1275 2005 50 0 0 chr3 90542427 90542665 -69057118 - L1_Mus1 LINE L1 -1 6566 6329 5 1275 186 43 0 0 chr3 90542807 90542830 -69056953 + (A)n Simple_repeat Simple_repeat 1 23 0 5 1275 201 171 24 0 chr3 90543249 90543290 -69056493 + CT-rich Low_complexity Low_complexity 1 42 0 5 1275 625 107 27 0 chr3 90543294 90543406 -69056377 + (TCCC)n Simple_repeat Simple_repeat 2 116 0 6 1275 283 252 66 66 chr3 90546264 90546400 -69053383 + MIR SINE MIR 109 244 -18 6 1275 3349 48 2 2 chr3 90546441 90546837 -69052946 + MTA_Mm LTR MaLR 1 396 0 6 1275 1900 181 9 0 chr3 90547723 90548049 -69051734 + ORR1A4 LTR MaLR 1 329 0 6 1275 5306 49 0 3 chr3 90548339 90548992 -69050791 - L1_Mm LINE L1 -524 5359 4709 6 1275 231 103 0 0 chr3 90549685 90549724 -69050059 + (CAGAGA)n Simple_repeat Simple_repeat 4 42 0 6 1275 3957 132 2 5 chr3 90549827 90550437 -69049346 - L1VL4 LINE L1 -606 5277 4670 6 1275 15926 147 10 18 chr3 90550437 90553751 -69046032 - L1VL4 LINE L1 -1841 4042 755 6 1275 25 0 0 0 chr3 90555958 90555983 -69043800 + AT_rich Low_complexity Low_complexity 1 25 0 6 1275 309 161 14 18 chr3 90555996 90556062 -69043721 - B2_Mm2 SINE B2 -82 116 46 6 1275 1225 104 35 0 chr3 90556126 90556299 -69043484 - B2_Mm1t SINE B2 -13 180 2 6 1275 1578 156 56 8 chr3 90556300 90556648 -69043135 - RMER19A LTR ERVK -19 718 313 7 1275 2818 139 40 52 chr3 90558290 90558883 -69040900 + MusHAL1 LINE L1 1761 2346 -366 7 1275 8226 143 63 6 chr3 90558886 90561393 -69038390 + Lx3C LINE L1 4305 6954 -22 7 1275 767 216 149 14 chr3 90561393 90561515 -69038268 - RMER10B LTR ERVL -22 376 195 7 1275 597 28 0 0 chr3 90561515 90561586 -69038197 + (GA)n Simple_repeat Simple_repeat 2 72 0 7 1275 767 152 165 35 chr3 90561586 90561730 -69038053 - RMER10B LTR ERVL -204 194 23 7 1275 1946 250 105 22 chr3 90561744 90562485 -69037298 + L1_Mur3 LINE L1 4519 5321 -559 7 1275 207 0 0 0 chr3 90562488 90562511 -69037272 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 7 1275 417 186 41 0 chr3 90565244 90565341 -69034442 + L1_Mur3 LINE L1 5351 5451 -429 7 1275 15730 58 1 1 chr3 90565347 90567467 -69032316 + L1_Mm LINE L1 2884 5003 -880 7 159 33413 46 2 3 chr3 90567465 90572628 -69027155 + L1Md_T LINE L1 339 5589 -297 7 1276 8373 38 0 0 chr3 90572629 90573624 -69026159 + L1Md_T LINE L1 5591 6585 0 7 1276 4513 62 0 2 chr3 90573755 90574357 -69025426 + L1_Mm LINE L1 4982 5586 -297 7 1276 7711 63 6 1 chr3 90574357 90575335 -69024448 + L1Md_F2 LINE L1 5588 6570 -12 8 1276 2673 215 12 163 chr3 90575335 90575775 -69024008 + L1_Mm LINE L1 5564 5867 -13 7 1276 4209 139 64 12 chr3 90575800 90576839 -69022944 + Lx5 LINE L1 5309 6386 -664 8 1276 603 252 0 30 chr3 90577890 90578021 -69021762 - RMER13A LTR ERVK 0 860 734 8 1276 348 170 28 56 chr3 90578135 90578278 -69021505 + Lx5 LINE L1 6838 6993 -16 8 1276 5468 116 30 13 chr3 90582126 90583615 -69016168 + L1VL4 LINE L1 1 1522 -2037 8 1276 4342 40 2 0 chr3 90583612 90584159 -69015624 - L1Md_F3 LINE L1 -235 6347 5800 8 1276 2047 43 0 19 chr3 90584159 90584421 -69015362 + L1Md_F3 LINE L1 6324 6580 -4 8 1276 7800 109 14 1 chr3 90584422 90585674 -69014109 + L1VL4 LINE L1 1515 2783 -776 8 1276 30806 81 4 16 chr3 90585681 90590812 -69008971 + L1Md_F LINE L1 517 5586 -297 8 1276 8066 48 1 2 chr3 90590812 90591797 -69007986 + L1Md_F2 LINE L1 5587 6570 -12 8 1276 26 30 0 0 chr3 90591878 90591911 -69007872 + AT_rich Low_complexity Low_complexity 1 33 0 8 1276 24414 102 5 3 chr3 90591911 90595696 -69004087 + L1_Mm LINE L1 1504 5297 -586 8 1276 2395 73 6 15 chr3 90595696 90596029 -69003754 + L1_Mus1 LINE L1 6238 6567 0 8 1276 1925 194 47 0 chr3 90596036 90596480 -69003303 + L1_Mm LINE L1 4395 4865 -1278 9 1276 1613 204 39 8 chr3 90596477 90596862 -69002921 + Lx LINE L1 6253 6649 -5 9 1276 1796 148 107 70 chr3 90597180 90597638 -69002145 - IAPLTR2_Mm LTR ERVK 0 475 1 9 1276 192 77 0 0 chr3 90598497 90598523 -69001260 + (TTTTC)n Simple_repeat Simple_repeat 4 29 0 9 1276 33720 69 4 8 chr3 90599338 90605498 -68994285 - L1Md_F3 LINE L1 0 6584 441 9 1276 600 224 48 0 chr3 90605781 90605928 -68993855 + Lx7 LINE L1 5634 5787 -1909 9 1276 5994 207 34 22 chr3 90605933 90607681 -68992102 + Lx5 LINE L1 5277 7050 0 9 1276 401 309 78 39 chr3 90607700 90607956 -68991827 + Lx7 LINE L1 6634 6910 -563 9 1276 216 0 0 0 chr3 90608038 90608062 -68991721 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 9 1276 357 235 0 0 chr3 90608068 90608153 -68991630 - Lx8 LINE L1 -1057 6416 6332 9 1276 274 200 0 0 chr3 90608391 90608451 -68991332 + MER66-int LTR ERV1 6418 6477 -199 9 1276 216 0 0 0 chr3 90609086 90609110 -68990673 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 1 1276 6556 107 28 19 chr3 90609117 90610634 -68989149 - L1Md_F2 LINE L1 -14 6568 5016 1 1276 3153 86 18 16 chr3 90610634 90611083 -68988700 - L1Md_F2 LINE L1 -3 6579 6130 1 1276 4521 200 15 107 chr3 90611083 90611528 -68988255 - L1Md_F2 LINE L1 -734 5143 4700 1 1276 4526 108 19 77 chr3 90611517 90612362 -68987421 - L1VL1 LINE L1 -5440 982 187 1 1276 3062 132 36 9 chr3 90612362 90612922 -68986861 + MusHAL1 LINE L1 1506 2080 -632 1 1276 2182 87 23 0 chr3 90613137 90613484 -68986299 + L1_Mur1 LINE L1 2208 2562 -3324 1 1276 6906 76 25 1 chr3 90613488 90614445 -68985338 + L1_Mus1 LINE L1 5588 6567 0 1 1276 5468 111 0 2 chr3 90614453 90615337 -68984446 + L1_Mur1 LINE L1 2555 3436 -2450 1 1276 445 129 0 0 chr3 90615566 90615636 -68984147 + Lx2 LINE L1 6574 6643 -354 1 1276 1320 142 23 0 chr3 90615636 90615854 -68983929 + Lx2 LINE L1 6775 6997 0 1 1276 292 253 21 0 chr3 90616080 90616175 -68983608 + Lx6 LINE L1 7360 7456 -4 1 1276 2358 281 75 42 chr3 90616908 90618409 -68981374 + Lx7 LINE L1 4460 5971 -1673 1 1276 513 0 0 0 chr3 90618409 90618466 -68981317 + (TG)n Simple_repeat Simple_repeat 1 57 0 1 1276 453 296 127 40 chr3 90618466 90618532 -68981251 + Lx7 LINE L1 5972 6037 -1607 1 1276 251 209 0 0 chr3 90618653 90618752 -68981031 + CT-rich Low_complexity Low_complexity 1 99 0 1 1276 1509 310 77 12 chr3 90618782 90619432 -68980351 + Lx8 LINE L1 6227 6918 -555 1 1276 227 177 79 16 chr3 90619427 90619490 -68980293 - Lx8 LINE L1 -935 6538 6472 1 1276 519 167 0 0 chr3 90619605 90619701 -68980082 + L1_Mur2 LINE L1 4139 4234 -1643 1 1276 932 289 80 21 chr3 90619698 90620073 -68979710 + Lx6 LINE L1 7063 7459 -1 1 1276 297 298 8 46 chr3 90620147 90620277 -68979506 - L1M2 LINE L1 -499 5801 5677 1 1276 306 230 101 32 chr3 90620288 90620528 -68979255 - L1M2 LINE L1 -559 5597 5347 1 1276 11814 94 3 11 chr3 90620535 90623117 -68976666 + L1_Mus2 LINE L1 4008 6566 0 1 1276 231 75 0 0 chr3 90623278 90623318 -68976465 - Lx2B LINE L1 -3 6997 6958 1 1276 282 309 78 78 chr3 90623338 90623542 -68976241 - RLTR25B LTR ERVK -10 1018 815 1 1276 10985 132 12 8 chr3 90623656 90625611 -68974172 - L1_Mur1 LINE L1 -1134 4752 2791 1 1276 805 161 24 63 chr3 90625606 90625812 -68973971 - L1_Mur1 LINE L1 -465 5421 5224 1 1276 3274 43 2 12 chr3 90625812 90626212 -68973571 - MTA_Mm LTR MaLR 0 396 1 1 1276 5153 68 24 6 chr3 90626212 90626937 -68972846 - MTA_Mm-int LTR MaLR 0 1098 400 1 1276 2897 118 56 15 chr3 90626921 90627385 -68972398 - RLTR1C LTR ERV1 -20 483 1 1 1276 4745 121 39 28 chr3 90627385 90628316 -68971467 - MMVL30-int LTR ERV1 -67 3631 2579 1 1276 594 291 31 27 chr3 90628583 90628844 -68970939 - MMVL30-int LTR ERV1 -3215 4563 4100 1 1276 4275 138 40 26 chr3 90628847 90629751 -68970032 - MMVL30-int LTR ERV1 -2409 2654 1615 1 1276 641 86 63 209 chr3 90629725 90629916 -68969867 - MMVL30-int LTR ERV1 -2177 1122 960 1 1276 586 55 0 0 chr3 90630003 90630076 -68969707 - MMERGLN-int LTR ERV1 -2245 1453 1381 1 1276 1093 236 132 34 chr3 90630079 90630632 -68969151 - MMERGLN-int LTR ERV1 -6948 608 2 1 1276 2833 128 42 29 chr3 90630650 90631131 -68968652 - RLTR1C LTR ERV1 -16 487 1 1 1276 2827 77 31 0 chr3 90631131 90631522 -68968261 - MTA_Mm-int LTR MaLR -695 403 1 1 1276 3327 38 2 10 chr3 90631522 90631921 -68967862 - MTA_Mm LTR MaLR 0 396 1 1 1276 1847 117 16 0 chr3 90631921 90632230 -68967553 - L1_Mur1 LINE L1 -658 5228 4915 1 1276 3697 135 9 0 chr3 90632221 90632970 -68966813 - L1_Mur1 LINE L1 -4455 1431 674 1 1276 5055 222 24 71 chr3 90633002 90634934 -68964849 - L1_Mur3 LINE L1 -2404 3479 1753 1 1276 33281 70 4 4 chr3 90634945 90641161 -68958622 - L1Md_F2 LINE L1 -13 6572 262 1 1276 1747 255 79 40 chr3 90641162 90642695 -68957088 - L1_Mur3 LINE L1 -4112 1768 243 1 1276 402 256 62 5 chr3 90642667 90642875 -68956908 - L1_Mur3 LINE L1 -1176 4704 4485 1 1276 2586 113 70 0 chr3 90642973 90643416 -68956367 - Lx3_Mus LINE L1 -687 6322 5849 1 1276 2941 186 8 9 chr3 90643416 90643944 -68955839 - RMER17B LTR ERVK 0 958 432 1 1276 458 33 17 0 chr3 90643944 90644004 -68955779 + (GA)n Simple_repeat Simple_repeat 2 62 0 1 1276 2120 124 6 18 chr3 90644004 90644310 -68955473 - RMER17B LTR ERVK -651 307 1 1 1276 1576 88 0 0 chr3 90644310 90644526 -68955257 - Lx3_Mus LINE L1 -1127 5854 5639 1 1276 2485 114 52 2 chr3 90644522 90644927 -68954856 + Lx3_Mus LINE L1 6564 6988 -21 1 1276 201 74 0 0 chr3 90644927 90644954 -68954829 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 1 1276 3575 175 60 22 chr3 90644991 90645815 -68953968 + RLTR13A LTR ERVK 1 855 0 1 1276 838 269 77 7 chr3 90646327 90646612 -68953171 - Lx6 LINE L1 -4 7456 7152 1 1276 1154 124 20 0 chr3 90646614 90646815 -68952968 - L1_Mur1 LINE L1 -535 5351 5147 1 1276 290 284 232 0 chr3 90648175 90648270 -68951513 + MT2A LTR ERVL 171 287 -246 1 1276 538 276 0 30 chr3 90648285 90648416 -68951367 - RMER13A LTR ERVK 0 860 734 1 1276 551 144 0 77 chr3 90648502 90648645 -68951138 + Lx3A LINE L1 6836 6967 -14 1 1276 189 0 0 0 chr3 90648645 90648666 -68951117 + (CAAA)n Simple_repeat Simple_repeat 3 23 0 1 1276 17178 167 20 9 chr3 90652481 90656800 -68942983 + L1VL4 LINE L1 356 4734 -1152 1 1276 7611 29 1 7 chr3 90656800 90657698 -68942085 + L1Md_F2 LINE L1 5687 6579 -3 1 1276 17178 172 21 12 chr3 90657698 90657841 -68941942 + L1VL4 LINE L1 4735 4865 -1021 1 1276 2040 191 13 0 chr3 90657827 90658219 -68941564 + Lx LINE L1 6253 6649 -5 1 1276 1000 104 21 7 chr3 90658816 90658961 -68940822 + B1_Mus1 SINE Alu 2 148 0 1 1276 2349 88 0 0 chr3 90660460 90660777 -68939006 + L1_Mus2 LINE L1 6249 6565 -1 1 1276 299 285 84 6 chr3 90660963 90661129 -68938654 + L1_Mur3 LINE L1 4485 4663 -1217 1 1276 1246 237 107 21 chr3 90661154 90661225 -68938558 - MTC LTR MaLR -4 417 348 1 1276 1710 178 269 30 chr3 90661225 90661782 -68938001 + RMER6C LTR ERVK 1 690 0 1 1276 1246 237 107 21 chr3 90661782 90662094 -68937689 - MTC LTR MaLR -74 347 3 1 1276 946 320 58 5 chr3 90662094 90662665 -68937118 + L1_Mur3 LINE L1 4687 5287 -593 1 1276 1498 79 0 0 chr3 90662705 90662934 -68936849 - L1_Mm LINE L1 -4152 1731 1503 1 1276 1665 230 25 14 chr3 90662934 90663287 -68936496 - MTD LTR MaLR -58 361 5 1 1276 324 0 0 0 chr3 90663575 90663611 -68936172 + (A)n Simple_repeat Simple_repeat 1 36 0 1 1276 9335 29 1 9 chr3 90663611 90665000 -68934783 - L1Md_Gf LINE L1 -4364 1522 37 1 1276 8074 8 0 2 chr3 90665000 90665903 -68933880 + L1Md_T LINE L1 5681 6581 -1 1 1276 966 260 59 98 chr3 90665921 90666411 -68933372 + L1_Mur3 LINE L1 5318 5788 -92 1 1276 1375 177 50 0 chr3 90666412 90666689 -68933094 + L1_Mur2 LINE L1 5277 5567 -310 1 1276 762 257 108 15 chr3 90666685 90666847 -68932936 + Lx5 LINE L1 6757 6930 -120 1 1276 423 0 0 0 chr3 90666847 90666894 -68932889 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 1276 762 257 108 15 chr3 90666894 90667000 -68932783 + Lx5 LINE L1 6931 7049 -1 1 1276 453 293 70 35 chr3 90667026 90667284 -68932499 + Lx8 LINE L1 6644 6910 -563 1 1276 186 43 0 0 chr3 90667365 90667388 -68932395 + (TTTTG)n Simple_repeat Simple_repeat 4 26 0 1 1276 254 323 0 0 chr3 90667388 90667481 -68932302 - Lx8 LINE L1 -1049 6424 6332 1 1276 22 0 0 0 chr3 90668419 90668441 -68931342 + AT_rich Low_complexity Low_complexity 1 22 0 1 1276 7331 137 9 50 chr3 90668442 90669812 -68929971 - Lx2 LINE L1 -1 6996 5684 1 1276 310 322 71 94 chr3 90670351 90670478 -68929305 + RSINE1 SINE B4 42 165 0 1 1276 1663 66 88 0 chr3 90670592 90670819 -68928964 - L1_Mus1 LINE L1 -1 6566 6320 1 1276 2992 125 36 2 chr3 90670819 90671347 -68928436 - L1_Mm LINE L1 -1213 4670 4125 1 1276 717 128 0 0 chr3 90671351 90671468 -68928315 - L1_Mus1 LINE L1 -6 6561 6445 1 1276 27678 115 16 5 chr3 90671471 90676198 -68923585 - L1_Mus1 LINE L1 -615 5952 1173 1 1276 189 0 0 0 chr3 90676198 90676219 -68923564 + (TG)n Simple_repeat Simple_repeat 2 22 0 1 1276 2258 170 7 94 chr3 90676219 90676725 -68923058 - L1_Mus1 LINE L1 -5414 1202 708 1 1276 328 238 57 16 chr3 90676725 90676849 -68922934 - L1_Mus1 LINE L1 -5824 792 664 1 1276 439 271 19 23 chr3 90676902 90677135 -68922648 - L1VL2 LINE L1 -6027 391 81 1 1276 49 66 0 0 chr3 90677186 90677277 -68922506 + AT_rich Low_complexity Low_complexity 1 91 0 1 1276 3104 185 82 15 chr3 90677351 90677950 -68921833 - RLTR26 LTR ERVK -3 639 1 1 1276 294 75 0 0 chr3 90677983 90678023 -68921760 + Lx4B LINE L1 5835 5874 -1184 1 1276 1281 242 19 27 chr3 90678019 90678431 -68921352 + Lx2B LINE L1 6498 6909 -99 1 1276 219 69 0 0 chr3 90678483 90678512 -68921271 + (TAAA)n Simple_repeat Simple_repeat 3 31 0 1 1276 1245 216 32 19 chr3 90678676 90678992 -68920791 + RLTR46 LTR ERVK 1 320 0 1 1276 2499 195 81 37 chr3 90679982 90680780 -68919003 + RMER19B LTR ERVK 1 902 0 1 1276 465 34 0 0 chr3 90681063 90681122 -68918661 + (TC)n Simple_repeat Simple_repeat 1 59 0 1 1276 2253 206 34 21 chr3 90683698 90684684 -68915099 + L1_Mur1 LINE L1 740 1728 -2184 1 1276 1511 69 0 0 chr3 90684683 90684887 -68914896 + L1Md_F2 LINE L1 5366 5569 -314 1 1276 7170 90 3 16 chr3 90684929 90685938 -68913845 + L1Md_F2 LINE L1 5587 6582 0 1 1276 13760 150 36 32 chr3 90685938 90688521 -68911262 + L1VL2 LINE L1 1108 3719 -2167 1 1276 1199 40 0 0 chr3 90688521 90688671 -68911112 + L1Md_A LINE L1 6431 6580 -2 1 1276 13760 153 39 34 chr3 90688671 90689175 -68910608 + L1VL2 LINE L1 3720 4208 -1678 1 1276 1435 209 64 0 chr3 90689175 90689458 -68910325 + RLTR26 LTR ERVK 342 642 0 1 1276 8741 105 22 3 chr3 90689458 90691421 -68908362 + Lx3_Mus LINE L1 5005 7008 -1 1 1276 32 0 0 0 chr3 90691421 90691453 -68908330 + AT_rich Low_complexity Low_complexity 1 32 0 1 1276 1348 201 35 32 chr3 90693670 90694167 -68905616 - Lx5 LINE L1 -652 6398 5867 1 1276 995 138 12 0 chr3 90694166 90694333 -68905450 - L1_Mus3 LINE L1 -96 6542 6374 1 1276 18759 92 10 5 chr3 90694347 90697898 -68901885 - L1Md_F2 LINE L1 -13 6569 2996 1 159 33562 72 5 7 chr3 90697939 90704093 -68895690 - L1Md_F3 LINE L1 0 6584 446 1 1277 10205 126 22 3 chr3 90704097 90706721 -68893062 - L1Md_F2 LINE L1 -3075 2808 132 1 1277 5375 102 7 1 chr3 90706723 90707538 -68892245 - L1_Mus3 LINE L1 -253 6385 5595 1 1277 7022 97 7 2 chr3 90707562 90709135 -68890648 - L1_Mus1 LINE L1 -2 6565 4987 1 1277 191 214 0 14 chr3 90709135 90709206 -68890577 + T-rich Low_complexity Low_complexity 3 72 0 1 1277 6094 126 14 5 chr3 90709212 90710611 -68889172 - L1Md_F2 LINE L1 -10 6572 5165 1 1277 5471 50 34 4 chr3 90710611 90711308 -68888475 - L1Md_F2 LINE L1 -5 6577 5860 1 1277 5148 141 4 14 chr3 90711308 90711480 -68888303 - L1Md_F2 LINE L1 -719 5164 4993 1 1277 6062 124 18 2 chr3 90711531 90713105 -68886678 - L1Md_F2 LINE L1 -2 6580 4987 1 1277 1189 133 79 0 chr3 90713106 90713392 -68886391 - L1_Mus1 LINE L1 0 6567 6343 1 1277 2486 110 24 0 chr3 90713394 90713766 -68886017 - L1_Mm LINE L1 -33 5850 5470 1 1277 3867 113 2 34 chr3 90714435 90715031 -68884752 - L1_Mus2 LINE L1 0 6566 5990 1 1277 4943 110 6 47 chr3 90715031 90715252 -68884531 + L1_Mm LINE L1 4738 4936 -947 1 1277 1499 198 0 4 chr3 90715252 90715526 -68884257 - Lx2B LINE L1 -6 6994 6722 1 1277 4943 110 6 47 chr3 90715526 90716169 -68883614 + L1_Mm LINE L1 4937 5566 -317 1 1277 3113 124 26 98 chr3 90716166 90716826 -68882957 - L1VL1 LINE L1 -5624 798 187 1 1277 2952 128 48 2 chr3 90716826 90717368 -68882415 + MusHAL1 LINE L1 1506 2072 -640 1 1277 5476 118 30 13 chr3 90721180 90722669 -68877114 + L1VL4 LINE L1 1 1522 -2037 1 1277 4270 44 2 2 chr3 90722666 90723214 -68876569 - L1Md_F3 LINE L1 -235 6347 5800 2 1277 2077 35 0 19 chr3 90723214 90723476 -68876307 + L1Md_F3 LINE L1 6324 6580 -4 2 1277 7731 113 14 1 chr3 90723477 90724729 -68875054 + L1VL4 LINE L1 1515 2783 -776 1 1277 30762 81 4 15 chr3 90724736 90729866 -68869917 + L1Md_F2 LINE L1 517 5586 -297 2 1277 8058 51 1 2 chr3 90729866 90730863 -68868920 + L1Md_F2 LINE L1 5587 6582 0 2 1277 23 33 0 0 chr3 90730928 90730958 -68868825 + AT_rich Low_complexity Low_complexity 1 30 0 2 1277 20003 102 116 3 chr3 90730958 90734358 -68865425 + L1_Mm LINE L1 1504 5289 -594 2 1277 2329 82 6 15 chr3 90734358 90734692 -68865091 + L1_Mus1 LINE L1 6237 6567 0 2 1277 1916 179 41 0 chr3 90734749 90735139 -68864644 + L1_Mm LINE L1 4445 4850 -1033 2 1277 1676 202 39 8 chr3 90735139 90735524 -68864259 + Lx LINE L1 6253 6649 -5 2 1277 1881 126 103 65 chr3 90735842 90736300 -68863483 - IAPLTR2_Mm LTR ERVK 0 475 1 2 1277 210 71 0 0 chr3 90737159 90737187 -68862596 + (TTTTC)n Simple_repeat Simple_repeat 2 29 0 2 1277 10852 6 0 0 chr3 90737455 90738733 -68861050 + L1Md_A LINE L1 4309 5586 -297 2 1277 9063 2 0 0 chr3 90738733 90739729 -68860054 + L1Md_A LINE L1 5587 6582 0 2 1277 33553 72 5 7 chr3 90740293 90746443 -68853340 - L1Md_F3 LINE L1 0 6584 441 2 1277 568 223 38 49 chr3 90746726 90746910 -68852873 + Lx7 LINE L1 5634 5815 -1881 2 1277 6012 207 33 20 chr3 90746878 90748624 -68851159 + Lx5 LINE L1 5277 7050 0 2 1277 417 305 78 39 chr3 90748644 90748900 -68850883 + Lx7 LINE L1 6634 6910 -563 2 1277 216 0 0 0 chr3 90748982 90749006 -68850777 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2 1277 357 235 0 0 chr3 90749012 90749097 -68850686 - Lx8 LINE L1 -1057 6416 6332 2 1277 278 245 21 11 chr3 90749299 90749394 -68850389 + MER66-int LTR ERV1 6382 6477 -199 2 1277 180 0 0 0 chr3 90750029 90750049 -68849734 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 2 1277 6550 105 27 19 chr3 90750055 90751574 -68848209 - L1Md_F2 LINE L1 -13 6569 5016 2 1277 3126 91 18 16 chr3 90751574 90752023 -68847760 - L1Md_F2 LINE L1 -3 6579 6130 2 1277 4587 198 15 106 chr3 90752023 90752468 -68847315 - L1Md_F2 LINE L1 -734 5143 4700 2 1277 4483 108 21 77 chr3 90752457 90753300 -68846483 - L1VL1 LINE L1 -5440 982 187 2 1277 3100 124 38 4 chr3 90753300 90753856 -68845927 + MusHAL1 LINE L1 1506 2080 -632 2 1277 2191 89 20 0 chr3 90754068 90754416 -68845367 + L1_Mur1 LINE L1 2208 2562 -3324 2 1277 6925 75 25 1 chr3 90754420 90755377 -68844406 + L1_Mus1 LINE L1 5588 6567 0 2 1277 5416 114 0 1 chr3 90755384 90756267 -68843516 + L1_Mur1 LINE L1 2555 3436 -2450 2 1277 459 114 0 0 chr3 90756496 90756566 -68843217 + Lx2 LINE L1 6574 6643 -354 2 1277 1331 142 23 0 chr3 90756566 90756784 -68842999 + Lx2 LINE L1 6775 6997 0 2 1277 285 253 21 0 chr3 90757010 90757105 -68842678 + Lx6 LINE L1 7360 7456 -4 2 1277 2288 282 76 44 chr3 90757839 90759332 -68840451 + Lx8 LINE L1 4460 5953 -1520 2 1277 570 15 0 0 chr3 90759342 90759409 -68840374 + (TG)n Simple_repeat Simple_repeat 1 67 0 2 1277 299 302 10 0 chr3 90759596 90759692 -68840091 + CT-rich Low_complexity Low_complexity 1 97 0 2 1277 1612 304 77 12 chr3 90759726 90760376 -68839407 + Lx8 LINE L1 6227 6918 -555 2 1277 485 177 0 0 chr3 90760549 90760645 -68839138 + L1_Mur2 LINE L1 4139 4234 -1643 2 1277 917 269 96 37 chr3 90760642 90761017 -68838766 + Lx6 LINE L1 7063 7459 -1 2 1277 297 298 8 46 chr3 90761091 90761221 -68838562 - L1_Mur3 LINE L1 -499 5801 5677 2 1277 330 233 99 1 chr3 90761232 90761396 -68838387 - L1_Mur3 LINE L1 -559 5597 5383 2 1277 11576 115 23 4 chr3 90761479 90763991 -68835792 + L1_Mus1 LINE L1 4008 6567 0 2 1277 1112 271 52 109 chr3 90764007 90764740 -68835043 + L1_Mur3 LINE L1 5096 5786 -94 2 1277 2611 194 39 45 chr3 90764748 90764995 -68834788 + Lx4B LINE L1 5284 5526 -351 2 1277 1811 27 9 4 chr3 90764995 90765220 -68834563 - L1Md_F3 LINE L1 0 6584 6359 2 1277 2611 194 39 45 chr3 90765220 90765570 -68834213 + Lx4B LINE L1 5527 5877 0 2 1277 5688 88 17 38 chr3 90765593 90766480 -68833303 - RLTR13A3 LTR ERVK 0 978 111 2 1277 2947 221 58 9 chr3 90766489 90767246 -68832537 + Lx4B LINE L1 5901 6694 -364 2 1277 189 0 0 0 chr3 90767246 90767267 -68832516 + (T)n Simple_repeat Simple_repeat 1 21 0 2 1277 36220 31 0 0 chr3 90767289 90773943 -68825840 - L1Md_T LINE L1 0 6585 1 2 1277 1405 262 38 3 chr3 90773945 90774322 -68825461 + Lx5 LINE L1 6674 7050 0 2 1277 11640 60 4 0 chr3 90774327 90775892 -68823891 + L1Md_F2 LINE L1 4016 5586 -297 2 1277 7611 63 15 9 chr3 90775892 90776882 -68822901 + L1Md_F2 LINE L1 5587 6582 0 2 1277 394 336 50 15 chr3 90776906 90777166 -68822617 + Lx8 LINE L1 6643 6911 -562 2 1277 479 271 91 45 chr3 90777199 90777419 -68822364 - Lx8 LINE L1 -967 6506 6277 2 1277 336 64 0 0 chr3 90777624 90777671 -68822112 + (CAAAAA)n Simple_repeat Simple_repeat 2 48 0 2 1277 38 0 0 0 chr3 90778300 90778338 -68821445 + AT_rich Low_complexity Low_complexity 1 38 0 2 1277 6840 137 25 11 chr3 90778339 90779378 -68820405 - Lx2 LINE L1 -1 6996 5944 2 1277 3900 97 29 26 chr3 90779378 90779963 -68819820 + RLTR1D LTR ERV1 3 589 -16 2 1277 1811 112 12 20 chr3 90779978 90780272 -68819511 - Lx2 LINE L1 -1048 5949 5685 2 1277 243 385 86 9 chr3 90780777 90780882 -68818901 + RSINE1 SINE B4 31 143 -22 2 1277 480 18 0 0 chr3 90780905 90780962 -68818821 + (CA)n Simple_repeat Simple_repeat 2 58 0 2 1277 30 45 0 0 chr3 90781073 90781117 -68818666 + AT_rich Low_complexity Low_complexity 1 44 0 2 1277 1694 135 82 14 chr3 90781131 90781499 -68818284 - RLTR9E LTR ERVK 0 393 1 2 1277 532 84 0 0 chr3 90781500 90781571 -68818212 - ETnERV2-int LTR ERVK -5 7401 7331 2 1277 16420 115 9 10 chr3 90781784 90784223 -68815560 - ETnERV2-int LTR ERVK -1183 6223 1660 2 1277 18890 97 8 12 chr3 90784223 90789470 -68810313 - L1Md_F2 LINE L1 -7 6575 98 2 1277 7412 140 39 13 chr3 90789471 90791440 -68808343 + Lx3C LINE L1 4813 6832 -144 2 1277 400 273 127 21 chr3 90791463 90791681 -68808102 - L1_Rod LINE L1 -418 5738 5429 2 1277 1719 158 41 13 chr3 90791696 90792010 -68807773 - Lx LINE L1 0 6654 6332 2 1277 276 286 0 17 chr3 90792077 90792207 -68807576 - Lx2 LINE L1 -688 5486 5363 2 1277 516 168 58 8 chr3 90792219 90792339 -68807444 - Lx4A LINE L1 0 7058 6933 2 1277 347 169 78 0 chr3 90792325 90792402 -68807381 - Lx4A LINE L1 -43 7015 6933 2 1277 299 145 97 0 chr3 90792388 90792450 -68807333 - Lx4A LINE L1 -43 7015 6948 2 1277 4653 163 47 2 chr3 90792451 90793244 -68806539 - Lx4A LINE L1 -43 7015 6188 2 1277 204 315 105 32 chr3 90793555 90793650 -68806133 + MIR SINE MIR 43 144 -64 2 1277 371 312 50 50 chr3 90793904 90794083 -68805700 + RMER13B LTR ERVK 5 183 -725 2 1277 504 219 41 94 chr3 90794088 90794259 -68805524 + RLTR26 LTR ERVK 269 430 -212 2 1277 192 77 0 0 chr3 90794803 90794829 -68804954 + (TCCC)n Simple_repeat Simple_repeat 3 28 0 2 1277 189 214 0 0 chr3 90794896 90794938 -68804845 + T-rich Low_complexity Low_complexity 4 45 0 2 1277 1326 89 10 16 chr3 90794943 90795129 -68804654 - L1_Mus3 LINE L1 -1 6637 6451 2 1277 3119 27 0 0 chr3 90795129 90795466 -68804317 - IAPLTR1a_Mm LTR ERVK 0 337 1 2 1277 7928 31 2 6 chr3 90795472 90796388 -68803395 - IAPEz-int LTR ERVK -6 6475 5563 2 1277 34213 23 31 10 chr3 90796381 90800347 -68799436 - IAPEz-int LTR ERVK -2422 4059 8 2 1277 3119 27 0 0 chr3 90800347 90800684 -68799099 - IAPLTR1a_Mm LTR ERVK 0 337 1 2 1277 7395 116 11 0 chr3 90800684 90802439 -68797344 - L1_Mus3 LINE L1 -182 6456 4685 2 1277 6597 229 63 52 chr3 90802453 90803921 -68795862 - L1Md_F2 LINE L1 -27 7433 5925 2 1277 7418 44 0 4 chr3 90803921 90804746 -68795037 - RLTR13B2 LTR ERVK 0 822 1 2 1277 29936 77 2 3 chr3 90804746 90808755 -68791028 - L1Md_F2 LINE L1 -658 5924 1919 2 1277 5147 132 20 10 chr3 90808755 90809697 -68790086 - RLTR13A LTR ERVK 0 958 8 2 1277 4941 137 14 16 chr3 90809703 90811201 -68788582 - L1Md_F2 LINE L1 -3959 1924 457 2 1277 5564 184 47 23 chr3 90811209 90811344 -68788439 - L1_Mur3 LINE L1 -588 5292 5159 2 1277 483 48 0 0 chr3 90811344 90811406 -68788377 + (TTA)n Simple_repeat Simple_repeat 2 63 0 2 1277 5564 184 47 23 chr3 90811406 90812485 -68787298 - L1_Mur3 LINE L1 -722 5158 4051 2 1277 201 204 20 20 chr3 90812601 90812651 -68787132 + (CATG)n Simple_repeat Simple_repeat 3 52 0 2 1277 29188 125 33 7 chr3 90814791 90820689 -68779094 - L1_Mus2 LINE L1 0 6566 509 2 1277 3071 218 42 20 chr3 90821239 90822103 -68777680 - L1_Mur3 LINE L1 -2151 3729 2847 2 1277 1144 189 0 36 chr3 90822125 90822345 -68777438 - Lx2 LINE L1 -1 6996 6785 2 1277 6879 142 37 3 chr3 90822344 90823965 -68775818 - Lx LINE L1 -368 6286 4602 2 1277 8467 173 36 53 chr3 90823965 90826920 -68772863 - L1Md_T LINE L1 -12 6570 3678 2 1277 2384 241 56 67 chr3 90826925 90827705 -68772078 - L1_Mur3 LINE L1 -3025 2855 2069 2 1277 387 0 0 0 chr3 90827705 90827748 -68772035 + (TC)n Simple_repeat Simple_repeat 2 44 0 2 1277 2384 241 56 67 chr3 90827748 90827866 -68771917 - L1_Mur3 LINE L1 -3812 2068 1967 2 1277 691 208 33 200 chr3 90827920 90828190 -68771593 + URR1A DNA MER1_type 1 225 -1 2 1277 27 29 0 0 chr3 90829187 90829221 -68770562 + AT_rich Low_complexity Low_complexity 1 34 0 2 1277 279 0 0 0 chr3 90829243 90829274 -68770509 + (TA)n Simple_repeat Simple_repeat 1 31 0 2 1277 421 304 120 16 chr3 90829288 90829472 -68770311 - B3 SINE B2 -13 203 1 2 1277 904 270 98 53 chr3 90830534 90830890 -68768893 - RMER13A LTR ERVK -394 466 95 2 1277 526 259 20 126 chr3 90832666 90832865 -68766918 + B3A SINE B2 5 182 -16 2 1278 249 220 34 0 chr3 90833198 90833257 -68766526 + MTEa LTR MaLR 4 64 -315 2 1278 241 247 148 0 chr3 90833257 90833279 -68766504 + MT2A LTR ERVL 4 96 -437 2 1278 432 355 71 0 chr3 90833283 90833480 -68766303 + MTEa LTR MaLR 127 337 -42 2 1278 741 302 26 49 chr3 90833489 90833795 -68765988 - Lx5 LINE L1 -7 7043 6745 2 1278 5384 125 24 48 chr3 90833796 90834720 -68765063 - RLTR13D6 LTR ERVK 0 902 1 2 1278 435 282 42 14 chr3 90834722 90834866 -68764917 - Lx5 LINE L1 -303 6747 6600 2 1278 867 75 0 8 chr3 90835048 90835169 -68764614 - ORR1A3 LTR MaLR 0 326 207 2 1278 492 18 0 0 chr3 90835169 90835226 -68764557 + (GA)n Simple_repeat Simple_repeat 2 58 0 2 1278 2044 161 32 19 chr3 90836413 90836786 -68762997 + ORR1C1 LTR MaLR 1 378 0 2 1278 185 0 0 39 chr3 90838390 90838416 -68761367 + (TTA)n Simple_repeat Simple_repeat 1 25 0 2 1278 522 158 81 32 chr3 90838443 90838567 -68761216 - Lx3B LINE L1 -53 6920 6791 2 1278 758 116 25 0 chr3 90838861 90838982 -68760801 - Lx3B LINE L1 -183 6790 6667 2 1278 237 132 0 0 chr3 90839154 90839192 -68760591 + (TA)n Simple_repeat Simple_repeat 2 39 0 2 1278 396 0 0 0 chr3 90840182 90840226 -68759557 + (TTTA)n Simple_repeat Simple_repeat 4 47 0 2 1278 4128 169 31 12 chr3 90840227 90840962 -68758821 - Lx2B LINE L1 -13 6987 6239 2 1278 1236 194 47 23 chr3 90840962 90841263 -68758520 + L1_Mm LINE L1 4627 4934 -949 2 1278 949 155 0 0 chr3 90841264 90841425 -68758358 + Lx2A1 LINE L1 6079 6239 -769 2 1278 622 288 144 107 chr3 90841749 90842400 -68757383 + RMER13A LTR ERVK 1 681 -227 2 1278 941 166 11 6 chr3 90842707 90842883 -68756900 - URR1B DNA MER1_type -2 223 47 2 1278 552 226 0 0 chr3 90843129 90843231 -68756552 - ORR1C1 LTR MaLR -276 102 1 2 1278 558 212 175 0 chr3 90843359 90843496 -68756287 + URR1A DNA MER1_type 1 161 -65 2 1278 2082 118 3 60 chr3 90843797 90844131 -68755652 - ORR1A2 LTR MaLR 0 327 13 2 1278 213 94 0 0 chr3 90845176 90845208 -68754575 + (CAAAA)n Simple_repeat Simple_repeat 1 32 0 3 1278 262 250 115 0 chr3 90845278 90845374 -68754409 - RMER1B Other Other 0 1066 960 3 1278 1737 324 95 24 chr3 90845370 90846277 -68753506 - RMER1A Other Other -292 738 15 3 1278 1295 241 82 34 chr3 90846261 90846614 -68753169 - RMER1B Other Other -651 415 46 3 1278 231 368 0 59 chr3 90847163 90847264 -68752519 - RMER20B LTR ERVK -25 602 508 3 1278 651 331 94 65 chr3 90847261 90847771 -68752012 - RMER20B LTR ERVK -44 583 1 3 1278 866 271 19 84 chr3 90849604 90849866 -68749917 - ORR1C1 LTR MaLR -133 245 1 3 1278 1391 192 35 3 chr3 90849867 90850155 -68749628 - ORR1C1-int LTR MaLR -1 1508 1212 3 1278 971 262 212 41 chr3 90850161 90850647 -68749136 + RMER4B LTR ERVK 17 585 0 3 1278 2025 273 61 46 chr3 90850647 90851290 -68748493 - ORR1C1-int LTR MaLR -281 1089 437 3 1278 243 307 62 123 chr3 90851115 90851375 -68748408 - RLTR25A LTR ERVK -597 506 263 3 1278 23406 58 8 1 chr3 90851375 90855202 -68744581 - L1Md_F2 LINE L1 -67 6515 2659 3 1278 348 294 125 0 chr3 90855200 90855408 -68744375 - Lx5 LINE L1 -1316 6144 5892 3 1278 428 337 72 17 chr3 90855409 90855678 -68744105 + Lx5 LINE L1 6643 6883 -167 3 1278 1002 233 3 3 chr3 90856228 90856563 -68743220 + GA-rich Low_complexity Low_complexity 1 335 0 3 1278 22 56 0 0 chr3 90858144 90858180 -68741603 + AT_rich Low_complexity Low_complexity 1 36 0 3 1278 866 216 10 102 chr3 90858305 90858609 -68741174 + Lx2B LINE L1 6707 6982 -18 3 1278 233 309 14 29 chr3 90858654 90858724 -68741059 + RLTR22_Mur LTR ERVK 1741 1809 -39 3 1278 777 236 119 15 chr3 90858725 90858927 -68740856 - ORR1C1 LTR MaLR -155 223 1 3 1278 5271 187 6 18 chr3 90859693 90861264 -68738519 + L1VL4 LINE L1 500 2050 -1509 3 1278 2829 196 9 7 chr3 90861271 90861826 -68737957 - Lx LINE L1 -2 6652 6097 3 1278 2938 169 0 7 chr3 90861849 90862391 -68737392 - L1_Mm LINE L1 0 5883 5346 3 1278 819 174 25 0 chr3 90862418 90862579 -68737204 - IAPEY3_LTR LTR ERVK 0 332 168 3 1278 2686 120 20 4 chr3 90862583 90863085 -68736698 - MusHAL1 LINE L1 -307 2405 1896 3 1278 189 0 0 0 chr3 90863094 90863115 -68736668 + (CAAAA)n Simple_repeat Simple_repeat 3 23 0 3 1278 750 274 46 8 chr3 90863373 90863612 -68736171 - MYSERV6-int LTR ERVK -2150 4400 4153 3 1278 1608 99 31 23 chr3 90863629 90863887 -68735896 - L1Md_F2 LINE L1 0 6582 6323 3 1278 18934 84 29 6 chr3 90863887 90867354 -68732429 - L1Md_F LINE L1 -1755 4128 580 3 1278 638 187 12 0 chr3 90867355 90867504 -68732279 + ORR1A2 LTR MaLR 219 374 -4 3 1278 2104 328 58 78 chr3 90867509 90868084 -68731699 - MYSERV6-int LTR ERVK -4198 2352 1828 3 1278 920 96 66 0 chr3 90868084 90868220 -68731563 - B1_Mus1 SINE Alu -2 146 2 3 1278 2153 328 58 78 chr3 90868220 90869800 -68729983 - MYSERV6-int LTR ERVK -6880 2079 240 3 1278 182 190 0 23 chr3 90869800 90869843 -68729940 - L3 LINE CR1 -3178 1311 1270 3 1278 21 36 0 0 chr3 90869994 90870022 -68729761 + AT_rich Low_complexity Low_complexity 1 28 0 3 1278 3414 125 0 4 chr3 90870292 90870814 -68728969 + L1_Mus2 LINE L1 6046 6565 -1 3 1278 13150 151 34 16 chr3 90871421 90873591 -68726192 + L1VL1 LINE L1 426 2627 -1287 3 1278 1097 76 7 0 chr3 90873591 90873735 -68726048 - B1_Mus2 SINE Alu -2 145 1 3 1278 13150 168 20 10 chr3 90873735 90874959 -68724824 + L1VL1 LINE L1 2628 3894 -2249 3 1278 306 0 0 0 chr3 90877545 90877579 -68722204 + (A)n Simple_repeat Simple_repeat 1 34 0 3 1278 23 0 0 0 chr3 90879491 90879514 -68720269 + AT_rich Low_complexity Low_complexity 1 23 0 3 1278 10952 130 30 26 chr3 90880397 90882648 -68717135 + L1_Mus3 LINE L1 3848 6190 -376 3 1278 235 329 0 48 chr3 90882648 90882731 -68717052 - LTR33 LTR ERVL -206 309 231 3 1278 10952 130 30 26 chr3 90882731 90882916 -68716867 + L1_Mus3 LINE L1 6191 6384 -182 3 1278 263 307 64 28 chr3 90884855 90884937 -68714846 + B3 SINE B2 69 159 -57 3 1278 888 19 0 0 chr3 90884937 90885043 -68714740 + (CA)n Simple_repeat Simple_repeat 2 107 0 3 1278 263 307 64 28 chr3 90885043 90885101 -68714682 + B3 SINE B2 160 213 -3 3 1278 4102 82 2 2 chr3 90885190 90885740 -68714043 - L1_Mus1 LINE L1 0 6567 6018 3 1278 6088 62 40 4 chr3 90885733 90886537 -68713246 - L1Md_F2 LINE L1 -5 6577 5745 3 1278 949 134 6 6 chr3 90887881 90888054 -68711729 + (TC)n Simple_repeat Simple_repeat 2 174 0 3 1278 1551 219 239 31 chr3 90888165 90888584 -68711199 - RLTR19C LTR ERVK 0 506 1 3 1278 3951 225 40 30 chr3 90888589 90889561 -68710222 + MYSERV6-int LTR ERVK 6734 7715 -1244 3 1278 22 56 0 0 chr3 90890599 90890635 -68709148 + AT_rich Low_complexity Low_complexity 1 36 0 3 1278 1575 201 17 61 chr3 90891387 90891731 -68708052 + ORR1A4 LTR MaLR 1 329 0 3 1278 412 174 11 23 chr3 90891731 90891819 -68707964 + ORR1A4-int LTR MaLR 1 87 -1876 3 1278 507 17 0 0 chr3 90893348 90893408 -68706375 + (CA)n Simple_repeat Simple_repeat 2 61 0 3 1278 195 239 22 11 chr3 90894854 90894943 -68704840 + CT-rich Low_complexity Low_complexity 1 90 0 3 1278 222 278 0 65 chr3 90894962 90895039 -68704744 + polypyrimidine Low_complexity Low_complexity 4 75 0 3 1278 1602 206 25 25 chr3 90895054 90895418 -68704365 - RLTR19C LTR ERVK 0 506 143 3 1278 3502 243 75 13 chr3 90895465 90896122 -68703661 + MYSERV6-int LTR ERVK 6734 7410 -1549 3 1278 258 32 0 0 chr3 90896122 90896153 -68703630 + (CAAA)n Simple_repeat Simple_repeat 4 34 0 3 1278 3502 243 75 13 chr3 90896153 90896420 -68703363 + MYSERV6-int LTR ERVK 7411 7714 -1245 3 1278 26 50 0 0 chr3 90897561 90897601 -68702182 + AT_rich Low_complexity Low_complexity 1 40 0 3 1278 357 24 0 0 chr3 90897848 90897890 -68701893 + (CA)n Simple_repeat Simple_repeat 1 42 0 3 1278 602 333 0 11 chr3 90897902 90898084 -68701699 - MT2A LTR ERVL -77 456 277 3 1278 212 224 50 10 chr3 90898084 90898183 -68701600 + (TA)n Simple_repeat Simple_repeat 2 104 0 3 1278 747 305 151 38 chr3 90898206 90898704 -68701079 + RMER12 LTR ERVK 769 1322 0 3 1278 363 283 28 0 chr3 90898704 90898810 -68700973 - MT2A LTR ERVL -366 167 59 3 1278 5719 55 2 18 chr3 90898912 90900587 -68699196 + L1Md_A LINE L1 1 752 -5972 3 1278 5783 69 1 20 chr3 90900570 90902875 -68696908 + L1Md_A LINE L1 1 752 -5972 3 1278 39350 9 1 1 chr3 90902858 90909066 -68690717 + L1Md_A LINE L1 1 5586 -297 3 1278 9596 2 0 0 chr3 90909066 90910058 -68689725 + L1Md_A LINE L1 5587 6578 -4 3 1278 1406 247 11 8 chr3 90910058 90910413 -68689370 + RLTR15 LTR ERVK 4 359 0 3 1278 207 261 0 0 chr3 90910727 90910773 -68689010 + (CA)n Simple_repeat Simple_repeat 2 47 0 3 1278 577 261 36 42 chr3 90910791 90910983 -68688800 - MTEb LTR MaLR 0 379 189 3 1278 712 206 45 11 chr3 90910984 90911161 -68688622 - MYSERV6-int LTR ERVK -4663 4296 4114 3 1278 2056 215 20 11 chr3 90911162 90911872 -68687911 + ORR1A4-int LTR MaLR 1001 1960 -3 3 1278 1159 198 0 160 chr3 90911870 90912183 -68687600 + ORR1A4 LTR MaLR 1 263 -66 3 1278 1235 271 36 14 chr3 90912389 90912748 -68687035 - RMER1B Other Other -159 907 541 3 1278 748 326 32 35 chr3 90913014 90913354 -68686429 - RMER1B Other Other -608 458 120 3 1278 466 344 113 16 chr3 90914693 90914950 -68684833 - MTE2b LTR MaLR -71 308 27 3 1278 24 32 0 0 chr3 90914988 90915019 -68684764 + AT_rich Low_complexity Low_complexity 1 31 0 3 1278 25 0 0 0 chr3 90915248 90915273 -68684510 + AT_rich Low_complexity Low_complexity 1 25 0 3 1278 238 328 46 69 chr3 90915273 90915404 -68684379 - B3A SINE B2 -7 191 64 3 1278 936 49 0 0 chr3 90915676 90915798 -68683985 + (TG)n Simple_repeat Simple_repeat 1 122 0 3 1278 265 24 48 0 chr3 90916568 90916610 -68683173 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 3 1278 289 62 0 40 chr3 90916695 90916745 -68683038 + (CA)n Simple_repeat Simple_repeat 1 48 0 3 1278 288 0 0 0 chr3 90918248 90918280 -68681503 + (T)n Simple_repeat Simple_repeat 1 32 0 3 1278 434 259 17 9 chr3 90918471 90918620 -68681163 + L1_Mur3 LINE L1 4695 4859 -1284 3 1278 711 289 21 31 chr3 90918623 90918816 -68680967 - B3 SINE B2 0 216 26 3 1278 2236 138 101 0 chr3 90919336 90919714 -68680069 + Lx3_Mus LINE L1 6586 7001 -8 3 1278 586 325 50 25 chr3 90919832 90920154 -68679629 + L1_Rod LINE L1 5493 5822 -25 3 1278 308 305 0 0 chr3 90920206 90920288 -68679495 + MTE2b LTR MaLR 15 96 -283 3 1278 275 290 21 11 chr3 90920289 90920383 -68679400 - RLTR15 LTR ERVK -264 95 1 3 1278 407 255 21 0 chr3 90920463 90920557 -68679226 + MT2A LTR ERVL 57 152 -381 3 1278 659 264 123 82 chr3 90920570 90920888 -68678895 - RMER12 LTR ERVK 0 1322 992 3 1278 369 43 0 0 chr3 90920893 90920940 -68678843 + (TC)n Simple_repeat Simple_repeat 2 48 0 3 1278 414 0 0 0 chr3 90920940 90920985 -68678798 + (TA)n Simple_repeat Simple_repeat 1 46 0 3 1278 267 103 0 0 chr3 90920985 90921023 -68678760 + (CA)n Simple_repeat Simple_repeat 2 40 0 3 1278 2655 191 122 26 chr3 90921027 90921725 -68678058 - RMER12 LTR ERVK -554 768 4 3 1278 1324 268 7 3 chr3 90921726 90922022 -68677761 + MT2A LTR ERVL 160 456 -77 3 1278 600 50 0 0 chr3 90922232 90922312 -68677471 + (CA)n Simple_repeat Simple_repeat 2 81 0 3 1278 335 255 110 37 chr3 90922482 90922645 -68677138 - L1MB8 LINE L1 -131 6047 5873 3 1278 364 262 137 22 chr3 90922673 90922856 -68676927 - L1MB8 LINE L1 -388 5790 5587 3 1278 589 283 23 81 chr3 90922992 90923146 -68676637 + RSINE1 SINE B4 3 149 -16 3 1278 452 18 18 0 chr3 90923146 90923203 -68676580 + (CA)n Simple_repeat Simple_repeat 1 58 0 3 1278 589 283 23 81 chr3 90923203 90923221 -68676562 + RSINE1 SINE B4 150 165 0 3 1278 385 390 58 0 chr3 90923948 90924153 -68675630 - MIRb SINE MIR -23 245 29 3 1278 531 0 0 0 chr3 90924157 90924216 -68675567 + (TC)n Simple_repeat Simple_repeat 1 59 0 3 1278 419 260 267 19 chr3 90924825 90925095 -68674688 - L1MC LINE L1 -2016 5769 5433 3 1278 257 288 54 0 chr3 90925100 90925211 -68674572 - L1MA10 LINE L1 -2 6332 6216 3 1278 35225 68 1 1 chr3 90925271 90930546 -68669237 - L1Md_F2 LINE L1 0 6585 1306 3 1278 36126 37 1 0 chr3 90930547 90937034 -68662749 + L1Md_T LINE L1 1 5589 -297 3 1278 9613 4 0 0 chr3 90937034 90938030 -68661753 + L1Md_T LINE L1 5590 6585 0 3 1278 5627 80 9 28 chr3 90938034 90938903 -68660880 - L1Md_F2 LINE L1 -5412 1315 362 3 1278 6244 117 32 1 chr3 90938912 90939999 -68659784 - L1_Mus2 LINE L1 0 6566 5447 3 1278 9228 32 35 40 chr3 90939994 90941644 -68658139 - L1Md_T LINE L1 -3 6579 4882 3 1278 225 183 46 77 chr3 90941644 90941709 -68658074 + RMER20A LTR ERVK 186 248 -268 3 1278 9228 32 35 40 chr3 90941709 90941947 -68657836 - L1Md_T LINE L1 -3 4881 4635 3 1278 18853 139 12 9 chr3 90941963 90945901 -68653882 - L1_Mus2 LINE L1 -427 5456 1509 3 1278 22681 145 90 4 chr3 90945903 90947212 -68652571 + L1_Mus1 LINE L1 480 2362 -3521 3 1278 5833 94 14 98 chr3 90947212 90948187 -68651596 + RLTR13B1 LTR ERVK 1 893 0 3 1278 22681 117 123 4 chr3 90948187 90952322 -68647461 + L1_Mus1 LINE L1 2363 6567 0 3 1278 4524 116 8 9 chr3 90952352 90953537 -68646246 - L1VL1 LINE L1 -2395 1303 194 3 1278 297 0 0 0 chr3 90953537 90953570 -68646213 + (TTTA)n Simple_repeat Simple_repeat 1 33 0 3 1278 1383 265 68 65 chr3 90953732 90954301 -68645482 - L1_Mus2 LINE L1 -5660 956 386 3 1278 1685 220 0 32 chr3 90954301 90954676 -68645107 + MYSERV6-int LTR ERVK 7108 7470 -1489 3 1278 661 189 7 7 chr3 90954718 90954862 -68644921 + MYSERV6-int LTR ERVK 7569 7712 -1247 3 1278 204 40 0 0 chr3 90955936 90955961 -68643822 + (TTTA)n Simple_repeat Simple_repeat 3 27 0 4 1278 984 131 0 0 chr3 90955964 90956109 -68643674 - B1_Mm SINE Alu 0 147 3 4 1278 1550 187 18 62 chr3 90956934 90957270 -68642513 + ORR1A4 LTR MaLR 1 321 -8 4 1278 2693 234 65 13 chr3 90957274 90958041 -68641742 + ORR1A4-int LTR MaLR 1 807 -1156 4 1278 773 323 47 13 chr3 90958057 90958355 -68641428 + ORR1A4 LTR MaLR 63 370 0 4 1278 1804 171 16 0 chr3 90958779 90959083 -68640700 + RLTR27 LTR ERVK 1 309 0 4 1278 292 143 0 0 chr3 90959125 90959167 -68640616 + MMERVK10C-int LTR ERVK 226 267 -7314 4 1278 649 236 62 41 chr3 90959199 90959393 -68640390 + MMERVK10C-int LTR ERVK 655 852 -1135 4 1278 7596 302 33 46 chr3 90959767 90962531 -68637252 + MMERVK10C-int LTR ERVK 1170 3880 -3701 4 1278 6417 59 34 2 chr3 90962531 90963360 -68636423 - RLTR13A LTR ERVK 0 855 1 4 159 7596 302 33 46 chr3 90963360 90964960 -68634823 + MMERVK10C-int LTR ERVK 3881 5478 -2103 4 1279 294 338 18 18 chr3 90964970 90965133 -68634650 + MMERVK10C-int LTR ERVK 6907 7069 -512 4 1279 1453 153 27 27 chr3 90965267 90965528 -68634255 + MMERVK10C-int LTR ERVK 7321 7581 0 4 1279 1867 162 20 0 chr3 90965528 90965831 -68633952 + RLTR27 LTR ERVK 1 309 0 4 1279 316 325 69 26 chr3 90966100 90966433 -68633350 + L1M1 LINE L1 5328 5680 -617 4 1279 530 210 14 0 chr3 90966522 90966660 -68633123 + (TATATG)n Simple_repeat Simple_repeat 6 145 0 4 1279 575 311 29 10 chr3 90966663 90966871 -68632912 - MT2A LTR ERVL -45 488 277 4 1279 22 35 0 0 chr3 90966871 90966900 -68632883 + AT_rich Low_complexity Low_complexity 1 29 0 4 1279 440 93 0 13 chr3 90966927 90967003 -68632780 + (TA)n Simple_repeat Simple_repeat 1 75 0 4 1279 854 279 49 59 chr3 90967078 90967402 -68632381 + RMER12 LTR ERVK 1002 1322 0 4 1279 407 265 25 8 chr3 90967402 90967520 -68632263 - MT2A LTR ERVL -366 167 48 4 1279 1404 227 16 28 chr3 90967587 90967950 -68631833 + RLTR15 LTR ERVK 1 359 0 4 1279 553 306 29 42 chr3 90968328 90968352 -68631431 - MTE2a LTR MaLR 0 379 357 4 1279 1644 99 25 0 chr3 90968352 90968594 -68631189 - L1_Mus1 LINE L1 -1 6566 6319 4 1279 594 336 33 30 chr3 90968594 90968864 -68630919 - MTE2a LTR MaLR -23 356 86 4 1279 21 0 0 0 chr3 90968930 90968951 -68630832 + AT_rich Low_complexity Low_complexity 1 21 0 4 1279 582 363 64 24 chr3 90968985 90969488 -68630295 - L1M2 LINE L1 -771 5372 4850 4 1279 603 306 34 17 chr3 90969530 90969706 -68630077 + B3 SINE B2 38 216 0 4 1279 279 280 32 48 chr3 90969733 90969857 -68629926 - L1_Mur3 LINE L1 -1071 4809 4688 4 1279 7539 149 28 7 chr3 90969956 90971298 -68628485 + L1_Mm LINE L1 2111 3481 -2402 4 1279 20264 98 41 6 chr3 90971294 90975562 -68624221 + L1Md_F3 LINE L1 846 5592 -297 4 1279 8136 42 5 3 chr3 90975562 90976558 -68623225 + L1Md_F3 LINE L1 5590 6587 0 4 1279 20989 125 7 11 chr3 90976558 90980686 -68619097 + L1_Mus1 LINE L1 2459 6567 0 4 1279 357 24 0 0 chr3 90980736 90980778 -68619005 + (TAAA)n Simple_repeat Simple_repeat 4 45 0 4 1279 181 0 69 0 chr3 90980793 90980822 -68618961 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 4 1279 1567 161 3 95 chr3 90980822 90981075 -68618708 + MusHAL1 LINE L1 883 1129 -1583 4 1279 3890 41 0 0 chr3 90981075 90981543 -68618240 - L1Md_T LINE L1 0 6582 6115 4 1279 1567 161 3 95 chr3 90981543 90981646 -68618137 + MusHAL1 LINE L1 1130 1206 -1506 4 1279 207 0 0 0 chr3 90981649 90981672 -68618111 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 4 1279 2493 235 13 4 chr3 90981682 90982233 -68617550 - Lx LINE L1 -2 6652 6097 4 1279 2486 194 14 42 chr3 90982256 90982809 -68616974 - L1_Mm LINE L1 0 5883 5346 4 1279 6236 187 19 12 chr3 90982791 90984158 -68615625 - L1_Mur1 LINE L1 -1408 4478 3103 4 1279 4837 240 38 29 chr3 90984514 90985955 -68613828 - MYSERV6-int LTR ERVK -4344 4615 3162 4 1279 17600 112 30 9 chr3 90985955 90989373 -68610410 - L1Md_F LINE L1 -2019 3864 369 4 1279 192 40 0 0 chr3 90989389 90989414 -68610369 + (TTTA)n Simple_repeat Simple_repeat 1 25 0 4 1279 191 193 83 50 chr3 90989442 90989502 -68610281 - L4 LINE RTE -1667 362 301 4 1279 986 319 73 48 chr3 90989502 90990061 -68609722 - MYSERV6-int LTR ERVK -4997 1553 996 4 1279 252 0 0 0 chr3 90990061 90990089 -68609694 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 4 1279 1081 319 63 20 chr3 90990089 90990800 -68608983 - MYSERV6-int LTR ERVK -7687 1272 258 4 1279 1778 65 53 15 chr3 90990811 90991077 -68608706 - ORR1A2 LTR MaLR -51 276 1 4 1279 3316 212 118 16 chr3 90992300 90992958 -68606825 + L1VL2 LINE L1 97 774 -5561 4 1279 447 35 0 0 chr3 90992958 90993015 -68606768 + (ATG)n Simple_repeat Simple_repeat 1 57 0 4 1279 3316 147 21 7 chr3 90993015 90993454 -68606329 + L1VL2 LINE L1 775 1280 -2335 4 1279 15137 72 11 1 chr3 90993448 90995474 -68604309 + L1Md_F2 LINE L1 3540 5585 -298 4 1279 7754 55 5 6 chr3 90995475 90996472 -68603311 + L1Md_F2 LINE L1 5587 6582 0 4 1279 1228 222 20 72 chr3 90997677 90998022 -68601761 + ORR1A4 LTR MaLR 1 327 -2 4 1279 2828 215 41 28 chr3 90998032 90998741 -68601042 + ORR1A4-int LTR MaLR 19 736 -1227 4 1279 521 93 0 13 chr3 90998746 90998822 -68600961 - L1_Mm LINE L1 -1317 4566 4492 4 1279 580 208 191 62 chr3 90998822 90999063 -68600720 - RLTR10A LTR ERVK 0 411 140 4 1279 1719 220 15 30 chr3 90999099 90999592 -68600191 - RLTR45-int LTR ERVK -202 7042 6529 4 1279 449 336 64 21 chr3 90999720 91000000 -68599783 - IAP-d-int LTR ERVK -1335 5207 4916 4 1279 1431 332 56 43 chr3 91000034 91001631 -68598152 - IAP-d-int LTR ERVK -1657 4885 3268 1 1279 745 284 63 49 chr3 91001692 91002118 -68597665 - IAP-d-int LTR ERVK -3870 2672 2241 1 1279 421 191 60 52 chr3 91002396 91002512 -68597271 - RLTR45-int LTR ERVK -1553 434 318 2 1279 608 224 183 54 chr3 91002528 91002769 -68597014 - RLTR10A LTR ERVK 0 411 140 2 1279 1715 219 15 32 chr3 91002805 91003299 -68596484 - RLTR45-int LTR ERVK -202 7042 6529 2 1279 1406 221 15 68 chr3 91004947 91005286 -68594497 + ORR1A4 LTR MaLR 1 321 -8 3 1279 2832 229 54 14 chr3 91005290 91006066 -68593717 + ORR1A4-int LTR MaLR 1 807 -1156 3 1279 774 354 36 20 chr3 91006082 91006385 -68593398 + ORR1A4 LTR MaLR 63 370 0 3 1279 421 354 48 13 chr3 91006883 91007184 -68592599 + L1M2 LINE L1 5115 5431 -733 4 1279 219 36 0 0 chr3 91007188 91007216 -68592567 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 5 1279 325 271 17 6 chr3 91007317 91007457 -68592326 + L1M2 LINE L1 5538 5681 -487 4 1279 495 60 39 19 chr3 91007546 91007649 -68592134 + (TA)n Simple_repeat Simple_repeat 1 105 0 6 1279 3742 184 70 24 chr3 91007724 91008575 -68591208 - RLTR13D6 LTR ERVK -48 854 1 7 1279 297 0 0 0 chr3 91008797 91008830 -68590953 + (TG)n Simple_repeat Simple_repeat 2 34 0 8 1279 453 328 63 16 chr3 91008980 91009169 -68590614 + RMER12 LTR ERVK 1040 1237 -85 9 1279 400 292 28 0 chr3 91009249 91009355 -68590428 - MT2A LTR ERVL -366 167 59 1 1279 895 251 25 0 chr3 91009436 91009675 -68590108 + RLTR15 LTR ERVK 1 245 -114 1 1279 507 149 0 0 chr3 91009678 91009799 -68589984 + (TA)n Simple_repeat Simple_repeat 1 121 0 1 1279 485 222 19 0 chr3 91009810 91009866 -68589917 + RLTR15 LTR ERVK 250 305 -54 1 1279 180 0 0 0 chr3 91009866 91009886 -68589897 + (TA)n Simple_repeat Simple_repeat 2 21 0 1 1279 485 222 19 0 chr3 91009886 91009937 -68589846 + RLTR15 LTR ERVK 306 358 -1 1 1279 753 318 34 31 chr3 91010308 91010600 -68589183 - MTE2b LTR MaLR -4 375 83 1 1279 21 0 0 0 chr3 91010663 91010684 -68589099 + AT_rich Low_complexity Low_complexity 1 21 0 1 1279 463 358 61 27 chr3 91010694 91011168 -68588615 - L1M2 LINE L1 -746 5397 4908 1 1279 367 303 22 93 chr3 91011259 91011441 -68588342 + B2_Mm2 SINE B2 26 194 -1 1 1279 250 257 37 56 chr3 91011479 91011586 -68588197 - L1_Mur3 LINE L1 -1079 4801 4697 1 1279 2388 216 64 66 chr3 91011618 91011662 -68588121 - MYSERV6-int LTR ERVK -2445 6514 6449 1 1279 189 0 0 0 chr3 91011662 91011683 -68588100 + (TC)n Simple_repeat Simple_repeat 2 22 0 2 1279 477 0 0 0 chr3 91011684 91011737 -68588046 + (TA)n Simple_repeat Simple_repeat 2 54 0 2 1279 2388 216 64 66 chr3 91011737 91012473 -68587310 - MYSERV6-int LTR ERVK -2511 6448 5734 1 1279 2402 135 24 29 chr3 91012474 91012887 -68586896 - RLTR9F LTR ERVK -4 411 1 2 1279 435 119 26 12 chr3 91012889 91012972 -68586811 - ETnERV2-int LTR ERVK -4 7402 7331 2 1279 5819 151 14 41 chr3 91013170 91015097 -68584686 - ETnERV2-int LTR ERVK -977 6429 3441 2 1279 5341 135 36 12 chr3 91015430 91016368 -68583415 - ETnERV2-int LTR ERVK -3950 3456 2496 2 1279 517 156 36 9 chr3 91016383 91016493 -68583290 - ETnERV2-int LTR ERVK -5308 2098 1986 2 1279 272 365 8 17 chr3 91016728 91016845 -68582938 - RMER1A Other Other -656 374 259 2 1279 2583 68 0 0 chr3 91016859 91017185 -68582598 + IAPLTR3 LTR ERVK 1 326 0 2 1279 11380 53 35 0 chr3 91017185 91018607 -68581176 + IAPLTR3-int LTR ERVK 1 1472 -5349 2 1279 12788 34 1 7 chr3 91018605 91020113 -68579670 + IAPLTR3-int LTR ERVK 5304 6801 -20 2 1279 2634 43 12 15 chr3 91020113 91020440 -68579343 + IAPLTR3 LTR ERVK 1 326 0 2 1279 803 314 20 8 chr3 91020500 91020747 -68579036 - RMER1B Other Other -704 362 113 2 1279 1817 121 3 10 chr3 91021121 91021422 -68578361 - L1_Mm LINE L1 -1231 4652 4354 2 1279 3455 131 12 0 chr3 91021416 91022219 -68577564 + L1_Mus3 LINE L1 5345 6161 -477 2 1279 395 138 23 0 chr3 91022223 91022310 -68577473 + L1_Mus3 LINE L1 6550 6638 0 2 1279 218 314 14 82 chr3 91022443 91022516 -68577267 - MIR SINE MIR -58 150 83 2 1279 269 100 20 0 chr3 91022517 91022567 -68577216 + (TTTG)n Simple_repeat Simple_repeat 2 52 0 3 1279 350 299 77 103 chr3 91022625 91022897 -68576886 - RMER20B LTR ERVK -265 362 98 3 1279 308 255 89 34 chr3 91022915 91023061 -68576722 - RLTR23 LTR ERV1 -2 428 275 3 1279 651 298 124 25 chr3 91023100 91023423 -68576360 + RLTR22_Mur LTR ERVK 450 804 -1044 3 1279 185 0 40 0 chr3 91025052 91025077 -68574706 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 3 1279 204 40 0 0 chr3 91025077 91025101 -68574682 + (TTAA)n Simple_repeat Simple_repeat 4 28 0 3 1279 525 80 0 0 chr3 91025729 91025804 -68573979 + (CA)n Simple_repeat Simple_repeat 1 75 0 3 1279 22 0 0 0 chr3 91025828 91025850 -68573933 + AT_rich Low_complexity Low_complexity 1 22 0 3 1279 260 158 0 50 chr3 91026535 91026595 -68573188 - MusHAL1 LINE L1 -375 2337 2281 3 1279 1972 121 40 57 chr3 91026615 91027018 -68572765 - MusHAL1 LINE L1 -421 2291 1896 3 1279 299 25 0 24 chr3 91027027 91027068 -68572715 + (CAAAA)n Simple_repeat Simple_repeat 3 42 0 3 1279 4959 240 31 26 chr3 91027366 91028800 -68570983 - MYSERV6-int LTR ERVK -4370 4589 3148 4 1279 473 261 20 28 chr3 91028884 91029122 -68570661 + L1VL1 LINE L1 85 485 -5933 4 1279 514 247 36 17 chr3 91029091 91029273 -68570510 + L1Md_F LINE L1 502 806 -5813 4 1279 1177 207 11 0 chr3 91029281 91029542 -68570241 + L1Md_F LINE L1 728 991 -5628 4 1279 2078 164 3 3 chr3 91029551 91029913 -68569870 + L1Md_F LINE L1 4899 5260 -626 4 1279 221 318 110 7 chr3 91030996 91031097 -68568686 + B3 SINE B2 43 159 -57 4 1279 468 0 0 0 chr3 91031097 91031149 -68568634 + (CA)n Simple_repeat Simple_repeat 2 53 0 4 1279 221 318 110 7 chr3 91031149 91031202 -68568581 + B3 SINE B2 160 212 -4 4 1279 210 285 0 28 chr3 91032604 91032747 -68567036 + CT-rich Low_complexity Low_complexity 1 138 0 4 1279 1666 230 239 19 chr3 91032764 91033179 -68566604 - RLTR19C LTR ERVK 0 506 1 4 1279 3138 224 48 27 chr3 91033184 91033967 -68565816 + MYSERV6-int LTR ERVK 6748 7547 -1412 4 1279 221 235 20 20 chr3 91033986 91034032 -68565751 + A-rich Low_complexity Low_complexity 3 48 0 4 1279 1353 118 0 29 chr3 91034032 91034295 -68565488 + L1_Mus1 LINE L1 6358 6567 0 4 1279 497 171 19 0 chr3 91034295 91034400 -68565383 + MYSERV6-int LTR ERVK 7609 7715 -1244 4 1279 339 25 0 0 chr3 91035872 91035912 -68563871 + (CA)n Simple_repeat Simple_repeat 1 40 0 5 1279 558 326 22 33 chr3 91035918 91036099 -68563684 - MT2A LTR ERVL -78 455 277 5 1279 241 246 39 23 chr3 91036099 91036228 -68563555 + (TA)n Simple_repeat Simple_repeat 2 132 0 5 1279 355 254 34 82 chr3 91036232 91036378 -68563405 + RMER12 LTR ERVK 770 908 -414 5 1279 914 240 34 31 chr3 91036667 91037026 -68562757 + L1VL2 LINE L1 579 1081 -5551 5 1279 16521 134 7 7 chr3 91037059 91040580 -68559203 - L1_Mus2 LINE L1 -1 6565 3046 5 1279 6035 125 8 1 chr3 91040576 91041965 -68557818 - L1VL1 LINE L1 -2105 1593 194 5 1279 1567 251 76 30 chr3 91042147 91042685 -68557098 - L1_Mus2 LINE L1 -5660 956 394 5 1279 2202 241 47 27 chr3 91042693 91043289 -68556494 + MYSERV6-int LTR ERVK 7108 7715 -1244 5 1279 8245 30 1 0 chr3 91043695 91045102 -68554681 - L1Md_T LINE L1 0 6582 5175 5 1279 215 79 91 13 chr3 91045389 91045466 -68554317 + (TATAA)n Simple_repeat Simple_repeat 5 87 0 5 1279 255 122 11 58 chr3 91045854 91045941 -68553842 + (TTTG)n Simple_repeat Simple_repeat 2 84 0 6 1279 239 167 15 29 chr3 91045941 91046009 -68553774 + T-rich Low_complexity Low_complexity 4 70 0 6 1279 1121 89 0 0 chr3 91046011 91046157 -68553626 - B1_Mm SINE Alu 0 147 2 6 1279 1103 244 26 62 chr3 91046946 91047287 -68552496 + ORR1A4 LTR MaLR 1 329 0 6 1279 2946 222 42 18 chr3 91047287 91047998 -68551785 + ORR1A4-int LTR MaLR 1 730 -1233 6 1279 300 319 22 11 chr3 91047998 91048090 -68551693 + PB1D9 SINE Alu 3 95 -25 6 1279 710 323 57 30 chr3 91048091 91048391 -68551392 + ORR1A4 LTR MaLR 63 370 0 6 1279 322 364 62 18 chr3 91048891 91049165 -68550618 + L1M2 LINE L1 5115 5400 -743 6 1279 297 273 16 9 chr3 91049276 91049405 -68550378 + L1M2 LINE L1 5541 5671 -497 6 1279 538 274 73 28 chr3 91049469 91049511 -68550272 - MT2A LTR ERVL -11 522 481 6 1279 186 43 0 0 chr3 91049511 91049534 -68550249 + (TG)n Simple_repeat Simple_repeat 2 24 0 6 1279 538 274 73 28 chr3 91049534 91049709 -68550074 - MT2A LTR ERVL -53 480 296 6 1279 6194 128 41 27 chr3 91049995 91050717 -68549066 + RMER17A-int LTR ERVK 623 1330 -398 6 1279 459 0 0 0 chr3 91050717 91050768 -68549015 + (CA)n Simple_repeat Simple_repeat 2 52 0 6 1279 6194 128 41 27 chr3 91050768 91051133 -68548650 + RMER17A-int LTR ERVK 1331 1726 -2 6 1279 3923 153 16 37 chr3 91051135 91051900 -68547883 + RMER17A LTR ERVK 1 749 -2 6 1279 332 200 11 0 chr3 91051956 91052046 -68547737 + (TA)n Simple_repeat Simple_repeat 1 91 0 7 1279 658 285 72 69 chr3 91052139 91052429 -68547354 + RMER12 LTR ERVK 1002 1292 -30 7 1279 346 248 78 52 chr3 91052460 91052575 -68547208 - MT2A LTR ERVL -366 167 50 6 1279 1317 239 20 0 chr3 91052653 91053001 -68546782 + RLTR15 LTR ERVK 3 357 -2 7 1279 857 306 30 27 chr3 91053380 91053676 -68546107 - MTE2b LTR MaLR 0 379 83 7 1279 2791 198 67 82 chr3 91054006 91054869 -68544914 - RMER17D LTR ERVK -15 874 25 7 1279 2652 244 87 53 chr3 91054967 91055927 -68543856 - MYSERV6-int LTR ERVK -2483 6476 5485 7 1279 1587 252 79 29 chr3 91055953 91056497 -68543286 - L1Md_F LINE L1 -5660 859 289 7 1279 2165 232 44 17 chr3 91056497 91057089 -68542694 + MYSERV6-int LTR ERVK 7108 7715 -1244 7 1279 4624 65 5 2 chr3 91057342 91057926 -68541857 + LTRIS_Mus LTR ERV1 1 586 -1 7 1279 3005 129 26 23 chr3 91057927 91058758 -68541025 + MuRRS-int LTR ERV1 1 1109 -3581 7 1279 3941 111 5 3 chr3 91058880 91059467 -68540316 + MuRRS-int LTR ERV1 1108 1695 -2995 7 1279 8915 65 3 10 chr3 91059477 91060710 -68539073 + MuRRS-int LTR ERV1 1650 2874 -1816 7 1279 5357 122 17 16 chr3 91060709 91060872 -68538911 + MuRRS-int LTR ERV1 3829 3990 -700 7 1279 296 24 24 0 chr3 91060872 91060913 -68538870 + (CAAA)n Simple_repeat Simple_repeat 2 43 0 7 1279 5357 122 17 16 chr3 91060913 91060932 -68538851 + MuRRS-int LTR ERV1 3991 4022 -668 7 1279 2920 55 0 3 chr3 91060932 91061299 -68538484 + L1Md_F3 LINE L1 6217 6582 -2 8 1279 5357 122 17 16 chr3 91061299 91061976 -68537807 + MuRRS-int LTR ERV1 4023 4690 0 7 1279 4565 73 2 2 chr3 91061976 91062563 -68537220 + LTRIS_Mus LTR ERV1 1 587 0 7 1279 1077 96 7 0 chr3 91063271 91063417 -68536366 - B1_Mm SINE Alu 0 147 1 8 1279 278 26 26 0 chr3 91063554 91063593 -68536190 + (TTTTG)n Simple_repeat Simple_repeat 2 41 0 8 1279 1050 106 0 0 chr3 91063605 91063746 -68536037 - B1_Mm SINE Alu -5 142 2 8 1279 1288 223 29 62 chr3 91064523 91064863 -68534920 + ORR1A4 LTR MaLR 1 329 0 8 1279 2935 231 36 20 chr3 91064863 91065580 -68534203 + ORR1A4-int LTR MaLR 1 730 -1233 8 1279 330 308 22 11 chr3 91065580 91065672 -68534111 + PB1D9 SINE Alu 3 95 -25 8 1279 742 320 46 26 chr3 91065673 91065975 -68533808 + ORR1A4 LTR MaLR 63 370 0 8 1279 264 320 71 25 chr3 91066625 91066936 -68532847 + L1M2 LINE L1 5281 5607 -690 8 1279 588 184 14 7 chr3 91067099 91067247 -68532536 + (TA)n Simple_repeat Simple_repeat 2 150 0 8 1279 538 285 46 51 chr3 91067247 91067443 -68532340 - MT2A LTR ERVL -44 489 295 8 1279 373 256 78 99 chr3 91067489 91067732 -68532051 + RMER17A-int LTR ERVK 430 667 -1061 8 1279 5756 131 43 27 chr3 91067753 91068456 -68531327 + RMER17A-int LTR ERVK 623 1310 -418 8 1279 4164 73 0 4 chr3 91068456 91069004 -68530779 + L1Md_F2 LINE L1 6036 6581 -1 9 1279 5756 131 43 27 chr3 91069004 91069384 -68530399 + RMER17A-int LTR ERVK 1311 1723 -5 8 1279 4074 116 22 94 chr3 91069386 91070193 -68529590 + RMER17A LTR ERVK 1 749 -2 8 1279 263 71 24 0 chr3 91070249 91070291 -68529492 + (TA)n Simple_repeat Simple_repeat 1 43 0 9 1279 441 331 0 23 chr3 91070292 91070425 -68529358 + RMER12 LTR ERVK 770 899 -423 9 1279 633 282 110 68 chr3 91070431 91070739 -68529044 + RMER12 LTR ERVK 1002 1322 0 9 1279 342 325 8 0 chr3 91070739 91070854 -68528929 - MT2A LTR ERVL -368 165 50 8 1279 1348 234 17 3 chr3 91070930 91071282 -68528501 + RLTR15 LTR ERVK 1 357 -2 9 1279 679 316 41 34 chr3 91071661 91071953 -68527830 - MTE2a LTR MaLR 0 379 86 9 1279 3974 122 6 137 chr3 91072257 91073121 -68526662 - RMER17A LTR ERVK 0 751 1 9 1279 652 311 28 11 chr3 91073454 91073636 -68526147 + B3 SINE B2 26 210 -6 9 1279 841 204 30 112 chr3 91073863 91074194 -68525589 - MYSERV6-int LTR ERVK -2588 6371 6068 9 1279 2121 219 101 19 chr3 91074303 91074591 -68525192 - MYSERV6-int LTR ERVK -3359 5600 5293 9 1279 356 188 12 0 chr3 91074591 91074671 -68525112 + Lx2 LINE L1 6917 6997 0 9 1279 2121 219 101 19 chr3 91074671 91075016 -68524767 - MYSERV6-int LTR ERVK -3667 5292 4915 9 1279 2465 218 67 63 chr3 91075031 91075932 -68523851 - MYSERV6-int LTR ERVK -3943 5016 4113 9 1279 2368 226 26 139 chr3 91075932 91076622 -68523161 + ORR1B1-int LTR MaLR 1352 1963 0 9 1279 507 208 19 19 chr3 91076629 91076737 -68523046 + ORR1B1 LTR MaLR 41 148 -246 9 1279 2427 120 5 13 chr3 91076738 91077111 -68522672 - MTA_Mm LTR MaLR -26 370 1 1 1279 319 127 0 0 chr3 91077113 91077172 -68522611 + ORR1B1 LTR MaLR 214 331 -63 9 1279 23382 59 1 6 chr3 91077939 91081155 -68518628 + L1Md_F3 LINE L1 2386 5585 -298 1 1279 7893 50 5 4 chr3 91081156 91082139 -68517644 + L1Md_F3 LINE L1 5587 6570 -14 1 1279 2768 22 3 0 chr3 91082167 91082488 -68517295 + RLTRETN_Mm LTR ERVK 1 322 0 1 1279 20414 20 4 3 chr3 91082488 91087235 -68512548 + MMETn-int LTR ERVK 1 4844 0 1 1279 2793 19 3 0 chr3 91087235 91087556 -68512227 + RLTRETN_Mm LTR ERVK 1 322 0 1 1279 255 79 0 0 chr3 91087602 91087640 -68512143 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 1 1279 838 290 33 13 chr3 91087669 91087976 -68511807 - RMER1B Other Other -213 853 541 1 1279 766 312 12 8 chr3 91088346 91088595 -68511188 - RMER1B Other Other -704 362 113 1 1279 1668 131 3 10 chr3 91088969 91089270 -68510513 - L1_Mm LINE L1 -1231 4652 4354 1 1279 1409 111 9 0 chr3 91089264 91089480 -68510303 + L1_Mus3 LINE L1 5345 5562 -321 1 1279 2771 49 0 3 chr3 91089480 91089808 -68509975 + IAPLTR2b LTR ERVK 1 327 0 1 1279 4389 92 8 20 chr3 91089809 91090471 -68509312 + IAPEz-int LTR ERVK 9 662 -5819 1 1279 2500 76 0 3 chr3 91090471 91090814 -68508969 + IAPEz-int LTR ERVK 1359 1700 -4781 1 1279 5958 67 11 17 chr3 91090809 91091641 -68508142 + IAPEz-int LTR ERVK 5653 6479 -2 1 1279 2726 52 0 3 chr3 91091643 91091971 -68507812 + IAPLTR2b LTR ERVK 1 327 0 1 1279 3212 139 28 0 chr3 91091971 91092560 -68507223 + L1_Mus3 LINE L1 5557 6161 -477 1 1279 382 149 11 0 chr3 91092565 91092652 -68507131 + L1_Mus3 LINE L1 6551 6638 0 1 1279 206 77 25 25 chr3 91092856 91092896 -68506887 + (TTTTTG)n Simple_repeat Simple_repeat 2 41 0 1 1279 277 331 58 109 chr3 91092952 91093227 -68506556 - RMER20B LTR ERVK -265 362 102 1 1279 688 282 22 9 chr3 91093533 91093755 -68506028 + RLTR22_Mur LTR ERVK 580 804 -1044 1 1280 188 86 29 0 chr3 91095354 91095389 -68504394 + (TTTA)n Simple_repeat Simple_repeat 1 36 0 1 1280 6670 46 1 5 chr3 91096539 91097366 -68502417 - L1Md_F3 LINE L1 0 6584 5761 1 1280 21 0 0 0 chr3 91098052 91098073 -68501710 + AT_rich Low_complexity Low_complexity 1 21 0 1 1280 370 270 24 0 chr3 91098396 91098522 -68501261 + L1_Mur3 LINE L1 4695 4823 -1057 1 1280 695 280 25 56 chr3 91098535 91098732 -68501051 - B3 SINE B2 0 216 26 1 1280 7518 39 0 1 chr3 91098735 91100141 -68499642 - L1Md_T LINE L1 -5 6577 5175 1 1280 215 79 91 13 chr3 91100428 91100505 -68499278 + (TATAA)n Simple_repeat Simple_repeat 5 87 0 1 1280 246 84 13 90 chr3 91100893 91100971 -68498812 + (TTTG)n Simple_repeat Simple_repeat 1 72 0 1 1280 1123 89 0 0 chr3 91101061 91101207 -68498576 - B1_Mm SINE Alu 0 147 2 1 1280 720 259 26 90 chr3 91101996 91102229 -68497554 + ORR1A4 LTR MaLR 1 218 -111 1 1280 533 229 7 0 chr3 91102229 91102369 -68497414 + MYSERV6-int LTR ERVK 7575 7715 -1244 1 1280 5697 47 7 3 chr3 91102775 91103499 -68496284 - L1Md_F2 LINE L1 0 6582 5856 1 1280 328 335 64 23 chr3 91103519 91103690 -68496093 + L1M2 LINE L1 4854 5031 -1112 1 1280 21 0 0 0 chr3 91103761 91103782 -68496001 + AT_rich Low_complexity Low_complexity 1 21 0 1 1280 583 330 48 49 chr3 91103928 91104011 -68495772 + L1_Rod LINE L1 5279 5348 -499 1 1280 2130 141 75 3 chr3 91104011 91104396 -68495387 + Lx3_Mus LINE L1 6589 7001 -8 1 1280 583 330 48 49 chr3 91104396 91104879 -68494904 + L1_Rod LINE L1 5349 5844 -3 1 1280 271 256 35 35 chr3 91104909 91104994 -68494789 + MTE2a LTR MaLR 12 96 -283 1 1280 239 337 11 0 chr3 91104997 91105089 -68494694 - RLTR15 LTR ERVK -266 93 1 1 1280 253 330 10 62 chr3 91105145 91105242 -68494541 + MTE2a LTR MaLR 38 129 -250 1 1280 495 211 11 0 chr3 91105169 91105264 -68494519 + MT2A LTR ERVL 57 152 -381 1 1280 432 262 85 99 chr3 91105393 91105586 -68494197 - RMER12 LTR ERVK -139 1183 991 1 1280 297 0 0 0 chr3 91105586 91105619 -68494164 + (TC)n Simple_repeat Simple_repeat 2 34 0 1 1280 513 115 0 0 chr3 91105619 91105696 -68494087 + (TA)n Simple_repeat Simple_repeat 1 78 0 1 1280 1499 204 41 35 chr3 91105696 91106093 -68493690 - RMER12 LTR ERVK -524 798 447 1 1280 1421 201 22 69 chr3 91106102 91106422 -68493361 - RMER12 LTR ERVK -1014 308 4 1 1280 1178 282 76 0 chr3 91106423 91106767 -68493016 + MT2A LTR ERVL 160 529 -4 1 1280 441 36 0 0 chr3 91106928 91106983 -68492800 + (CA)n Simple_repeat Simple_repeat 1 55 0 1 1280 211 267 51 110 chr3 91107079 91107197 -68492586 - L2 LINE L2 -1813 1606 1496 1 1280 1049 97 14 0 chr3 91109226 91109371 -68490412 - B1_Mm SINE Alu 0 147 1 1 1280 273 348 29 29 chr3 91109584 91109788 -68489995 - B3 SINE B2 -12 204 1 1 1280 1150 269 71 49 chr3 91109823 91110230 -68489553 - Lx5 LINE L1 -2 7048 6633 1 1280 268 167 0 0 chr3 91110283 91110331 -68489452 + L1M2 LINE L1 4920 4967 -1176 1 1280 229 315 0 47 chr3 91110695 91110865 -68488918 + L1_Rod LINE L1 5284 5445 -402 1 1280 2994 105 5 26 chr3 91110852 91111716 -68488067 - L1Md_F LINE L1 -4330 1553 709 1 1280 1075 116 6 0 chr3 91111714 91111886 -68487897 + L1_Mm LINE L1 4564 4736 -1147 1 1280 5177 55 3 6 chr3 91111886 91112547 -68487236 + L1Md_F2 LINE L1 5924 6582 0 1 1280 182 277 71 12 chr3 91113391 91113475 -68486308 + L2c LINE L2 2972 3060 -327 1 1280 6625 109 16 1 chr3 91113796 91115351 -68484432 + L1_Mus1 LINE L1 4987 6566 -1 1 1280 579 346 15 5 chr3 91115397 91115603 -68484180 - B3 SINE B2 0 216 9 1 1280 228 200 0 0 chr3 91115642 91115707 -68484076 + (TTTA)n Simple_repeat Simple_repeat 1 65 0 1 1280 1311 268 78 3 chr3 91115711 91116096 -68483687 - Lx5 LINE L1 -4 7046 6633 1 1280 244 329 76 31 chr3 91116137 91116520 -68483263 + L1_Mur3 LINE L1 4889 5288 -592 1 1280 339 356 126 7 chr3 91116521 91116798 -68482985 + L1M4 LINE L1 5317 5626 -552 1 1280 2473 277 32 109 chr3 91116807 91117236 -68482547 + L1_Mur3 LINE L1 4452 4852 -1025 1 1280 1149 82 0 0 chr3 91117236 91117383 -68482400 + B1_Mus2 SINE Alu 1 147 0 1 1280 2804 247 37 87 chr3 91117383 91117679 -68482104 + L1_Mur3 LINE L1 4853 5115 -765 1 1280 656 211 22 45 chr3 91117679 91117858 -68481925 + B2_Mm2 SINE B2 3 177 -18 1 1280 2804 239 38 82 chr3 91117858 91118676 -68481107 + L1_Mur3 LINE L1 5116 5880 0 1 1280 6880 82 13 8 chr3 91119140 91120812 -68478971 - L1Md_F2 LINE L1 -5 6577 4904 1 1280 1052 236 56 58 chr3 91120817 91121177 -68478606 + RLTR10D LTR ERVK 1 359 0 1 1280 10564 254 34 10 chr3 91121181 91124205 -68475578 + IAP-d-int LTR ERVK 29 3127 -3415 1 1280 24 0 0 0 chr3 91124216 91124240 -68475543 + AT_rich Low_complexity Low_complexity 1 24 0 1 1280 3905 134 1 1 chr3 91124684 91125350 -68474433 - Lx LINE L1 -445 6209 5544 1 1280 2219 171 37 23 chr3 91125350 91125781 -68474002 + Lx LINE L1 6218 6654 0 1 1280 258 56 0 0 chr3 91126189 91126225 -68473558 + (A)n Simple_repeat Simple_repeat 1 36 0 1 1280 2257 254 45 20 chr3 91127125 91127887 -68471896 - L1_Mur3 LINE L1 0 5880 5100 1 1280 23 33 0 0 chr3 91127887 91127917 -68471866 + AT_rich Low_complexity Low_complexity 1 30 0 1 1280 888 62 0 0 chr3 91127927 91128055 -68471728 + (TC)n Simple_repeat Simple_repeat 1 128 0 1 1280 766 204 36 36 chr3 91128062 91128230 -68471553 - B2_Mm2 SINE B2 -25 170 3 1 1280 2099 250 29 6 chr3 91128230 91128882 -68470901 - L1_Mur3 LINE L1 -765 5115 4449 1 1280 326 309 85 26 chr3 91128885 91129191 -68470592 - L1_Rod LINE L1 -282 5565 5242 1 1280 382 358 85 45 chr3 91129192 91129590 -68470193 - L1M2 LINE L1 -850 5293 4880 1 1280 1210 279 75 0 chr3 91129609 91129982 -68469801 + Lx5 LINE L1 6633 7033 -17 1 1280 302 67 22 0 chr3 91129982 91130027 -68469756 + (TAGA)n Simple_repeat Simple_repeat 4 49 0 1 1280 192 97 0 0 chr3 91130028 91130059 -68469724 + (A)n Simple_repeat Simple_repeat 1 31 0 1 1280 535 330 33 5 chr3 91130069 91130279 -68469504 + B3 SINE B2 1 216 0 1 1280 963 112 28 0 chr3 91130724 91130867 -68468916 + B1_Mus1 SINE Alu 1 147 -1 1 1280 576 29 0 0 chr3 91132946 91133016 -68466767 + (TG)n Simple_repeat Simple_repeat 1 70 0 1 1280 1198 301 3 0 chr3 91133234 91133530 -68466253 - MT2A LTR ERVL -77 456 160 1 1280 2536 210 128 14 chr3 91133531 91134251 -68465532 + RMER12 LTR ERVK 4 805 -517 1 1280 546 16 0 0 chr3 91134251 91134314 -68465469 + (GA)n Simple_repeat Simple_repeat 2 64 0 1 1280 480 292 107 97 chr3 91134314 91134614 -68465169 + RMER12 LTR ERVK 991 1296 -26 1 1280 438 271 83 0 chr3 91134632 91134765 -68465018 - MT2A LTR ERVL -358 175 32 1 1280 316 298 11 0 chr3 91134828 91134922 -68464861 + RLTR15 LTR ERVK 1 95 -264 1 1280 286 341 0 0 chr3 91134923 91135008 -68464775 - MTE2a LTR MaLR -283 96 12 1 1280 557 334 51 16 chr3 91135042 91135416 -68464367 - L1_Rod LINE L1 -8 5839 5453 1 1280 1977 162 90 0 chr3 91135518 91135907 -68463876 - Lx3_Mus LINE L1 0 7009 6586 1 1280 354 288 170 40 chr3 91135909 91136345 -68463438 - L1M2 LINE L1 -761 5413 4905 1 1280 614 335 24 19 chr3 91136406 91136619 -68463164 + B3 SINE B2 3 216 0 1 1280 295 275 28 0 chr3 91136644 91136753 -68463030 - L1_Mur3 LINE L1 -1070 4810 4699 1 1280 279 0 0 0 chr3 91137566 91137597 -68462186 + (TTTTA)n Simple_repeat Simple_repeat 5 35 0 1 1280 405 0 0 0 chr3 91137625 91137670 -68462113 + (TC)n Simple_repeat Simple_repeat 2 46 0 1 1280 360 0 0 0 chr3 91137670 91137709 -68462074 + (TG)n Simple_repeat Simple_repeat 1 40 0 1 1280 1866 126 94 53 chr3 91138703 91139096 -68460687 + RLTR9E LTR ERVK 1 409 0 1 1280 5057 192 83 73 chr3 91139098 91140894 -68458889 + ETnERV2-int LTR ERVK 2 2589 -4817 1 1280 3460 47 31 0 chr3 91141163 91141586 -68458197 + RLTR10C LTR ERVK 1 436 0 1 1280 405 0 0 0 chr3 91142549 91142594 -68457189 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 1280 300 280 53 46 chr3 91142674 91142805 -68456978 + RLTR22_Mur LTR ERVK 30 161 -1687 1 1280 451 56 28 0 chr3 91142807 91142878 -68456905 + (TA)n Simple_repeat Simple_repeat 1 73 0 1 1280 2628 252 29 93 chr3 91142903 91143183 -68456600 + RMER12 LTR ERVK 269 555 -767 1 1280 801 246 136 85 chr3 91143183 91143358 -68456425 - RMER17C LTR ERVK 0 410 225 1 1280 555 16 0 0 chr3 91143358 91143422 -68456361 + (GA)n Simple_repeat Simple_repeat 1 64 0 1 1280 801 246 136 85 chr3 91143422 91143636 -68456147 - RMER17C LTR ERVK -186 224 2 1 1280 2628 253 39 89 chr3 91143636 91144376 -68455407 + RMER12 LTR ERVK 556 1717 -131 1 1280 929 236 12 124 chr3 91144378 91144804 -68454979 + Lx2B LINE L1 6620 6997 -3 1 1280 692 249 123 28 chr3 91144899 91145110 -68454673 - ORR1C1 LTR MaLR -147 231 1 1 1280 3708 189 18 3 chr3 91145872 91147023 -68452760 + L1VL2 LINE L1 557 1728 -1887 1 1280 5550 230 22 24 chr3 91147026 91147119 -68452664 - MYSERV6-int LTR ERVK -4661 4298 4212 1 1280 3498 160 168 30 chr3 91147119 91147898 -68451885 + RMER17D LTR ERVK 1 887 -2 1 1280 5550 230 22 24 chr3 91147898 91148236 -68451547 - MYSERV6-int LTR ERVK -4748 4211 3875 1 1280 5357 80 56 4 chr3 91148236 91149002 -68450781 + RLTR13D1 LTR ERVK 1 806 0 1 1280 5550 230 22 24 chr3 91149002 91150153 -68449630 - MYSERV6-int LTR ERVK -5085 3874 2718 1 1280 1553 152 31 71 chr3 91150153 91150478 -68449305 - RLTRETN_Mm LTR ERVK 0 322 11 1 1280 3620 56 83 2 chr3 91150530 91151014 -68448769 - LTRIS2 LTR ERV1 0 564 42 1 1280 3076 204 79 23 chr3 91151017 91152226 -68447557 - MuRRS4-int LTR ERV1 -3216 1847 760 2 1280 4252 133 32 15 chr3 91152220 91152947 -68446836 - RMER16-int LTR ERVK -3965 1441 703 2 1280 439 266 19 25 chr3 91152929 91153091 -68446692 - MuRRS4-int LTR ERV1 -7005 551 391 2 1280 3858 72 83 2 chr3 91153570 91154088 -68445695 - LTRIS2 LTR ERV1 0 564 5 2 1280 316 121 69 0 chr3 91154167 91154219 -68445564 + ORR1A2 LTR MaLR 1 56 -271 2 1280 1450 91 35 0 chr3 91154219 91154417 -68445366 + RLTR45 LTR ERVK 1 205 -277 2 1280 1069 93 31 6 chr3 91154421 91154584 -68445199 + RLTR45 LTR ERVK 316 482 0 2 1280 1631 153 37 4 chr3 91154584 91154852 -68444931 + ORR1A2 LTR MaLR 47 323 -4 2 1280 1740 290 6 7 chr3 91154857 91155402 -68444381 - MYSERV6-int LTR ERVK -2079 3181 2638 2 1280 373 81 40 0 chr3 91155402 91155476 -68444307 + (TTTTG)n Simple_repeat Simple_repeat 2 78 0 2 1280 1071 93 0 0 chr3 91155483 91155622 -68444161 - B1_Mus1 SINE Alu -7 141 3 2 1280 2010 322 62 43 chr3 91155624 91157274 -68442509 - MYSERV6-int LTR ERVK -6880 2079 458 2 1280 21 36 0 0 chr3 91157422 91157450 -68442333 + AT_rich Low_complexity Low_complexity 1 28 0 2 1280 3039 154 2 19 chr3 91157720 91157931 -68441852 + L1_Mus2 LINE L1 6046 6256 -310 2 1280 3386 38 2 0 chr3 91157931 91158326 -68441457 - MTA_Mm LTR MaLR 0 396 1 2 1280 9364 26 3 0 chr3 91158326 91159419 -68440364 - MTA_Mm-int LTR MaLR 0 1098 3 2 1280 3364 40 2 0 chr3 91159421 91159816 -68439967 - MTA_Mm LTR MaLR 0 396 1 2 1280 3039 154 2 19 chr3 91159816 91160129 -68439654 + L1_Mus2 LINE L1 6257 6564 -2 2 1280 21441 179 33 21 chr3 91160823 91162951 -68436832 + L1_Mus3 LINE L1 495 2633 -3250 2 1280 1040 99 7 0 chr3 91162951 91163092 -68436691 - B1_Mus2 SINE Alu -1 146 5 2 1280 21441 172 21 28 chr3 91163092 91164309 -68435474 + L1_Mus3 LINE L1 2634 3840 -2043 2 1280 195 42 0 0 chr3 91164309 91164333 -68435450 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 2 1280 21441 172 21 28 chr3 91164333 91166222 -68433561 + L1_Mus3 LINE L1 3841 5791 -92 2 1280 4031 79 4 7 chr3 91166222 91166781 -68433002 + L1Md_F2 LINE L1 6026 6582 0 2 1280 21441 123 144 67 chr3 91166781 91167426 -68432357 + L1_Mus3 LINE L1 5792 6430 -208 2 1280 369 0 0 0 chr3 91168018 91168059 -68431724 + (TA)n Simple_repeat Simple_repeat 1 41 0 2 1280 207 0 0 0 chr3 91168900 91168923 -68430860 + (TA)n Simple_repeat Simple_repeat 1 23 0 2 1280 25 31 0 0 chr3 91169563 91169595 -68430188 + AT_rich Low_complexity Low_complexity 1 32 0 2 1280 4108 88 0 2 chr3 91169675 91170223 -68429560 - L1_Mus1 LINE L1 -3 6564 6018 2 1280 6248 70 0 5 chr3 91170216 91171035 -68428748 - L1Md_F2 LINE L1 -5 6577 5763 2 1280 369 0 0 0 chr3 91171448 91171489 -68428294 + (CA)n Simple_repeat Simple_repeat 2 42 0 2 1280 651 152 14 7 chr3 91172407 91172553 -68427230 + CT-rich Low_complexity Low_complexity 2 148 0 2 1280 1469 242 239 17 chr3 91172652 91173066 -68426717 - RLTR19C LTR ERVK 0 506 1 2 1280 1009 278 7 0 chr3 91173071 91173341 -68426442 + MYSERV6-int LTR ERVK 6734 7005 -1954 2 1280 6162 87 207 35 chr3 91173422 91174521 -68425262 - L1_Mm LINE L1 -919 4964 3677 2 1280 4444 56 5 0 chr3 91174540 91175092 -68424691 + L1Md_F2 LINE L1 6027 6581 -1 2 1280 17405 111 3 5 chr3 91175118 91177714 -68422069 + L1_Mm LINE L1 2996 5586 -297 2 1280 6563 107 18 2 chr3 91177714 91178683 -68421100 + L1Md_F2 LINE L1 5587 6570 -12 2 1280 225 0 0 0 chr3 91178946 91178971 -68420812 + (A)n Simple_repeat Simple_repeat 1 25 0 2 1280 836 265 9 22 chr3 91180128 91180312 -68419471 - ORR1C1 LTR MaLR -2 376 163 2 1280 390 302 40 34 chr3 91180312 91180487 -68419296 + RLTR22_Mur LTR ERVK 1 176 -1672 2 1280 1346 190 52 3 chr3 91180511 91180801 -68418982 + RMER12 LTR ERVK 246 549 -773 2 1280 1011 240 143 28 chr3 91180815 91181179 -68418604 - RMER17C LTR ERVK -4 406 1 2 1280 1645 246 129 32 chr3 91181179 91181394 -68418389 + RMER12 LTR ERVK 556 764 -558 2 1280 504 59 0 0 chr3 91181394 91181462 -68418321 + (TCCA)n Simple_repeat Simple_repeat 4 71 0 2 1280 1645 247 124 41 chr3 91181462 91181864 -68417919 + RMER12 LTR ERVK 765 1167 -155 2 1280 983 237 8 115 chr3 91181866 91182295 -68417488 + Lx2B LINE L1 6619 6990 -7 2 1280 297 250 79 53 chr3 91182298 91182412 -68417371 + RMER12 LTR ERVK 1706 1822 -26 2 1280 724 228 25 1 chr3 91182426 91182598 -68417185 - ORR1C1 LTR MaLR -183 195 1 2 1280 805 261 11 21 chr3 91183226 91183559 -68416224 + L1VL2 LINE L1 457 784 -5574 2 1280 17233 141 11 9 chr3 91183596 91187313 -68412470 - L1_Mus2 LINE L1 0 6566 2842 2 1280 19732 128 7 2 chr3 91187311 91191167 -68408616 + L1_Mus1 LINE L1 2692 6566 -1 2 1280 5330 134 108 13 chr3 91191190 91192360 -68407423 - L1VL1 LINE L1 -2395 1303 2 2 1280 210 91 0 0 chr3 91192360 91192393 -68407390 + (TTTA)n Simple_repeat Simple_repeat 1 33 0 2 1280 1329 268 77 33 chr3 91192555 91193102 -68406681 - L1_Mus2 LINE L1 -5660 956 386 2 1280 2175 247 42 20 chr3 91193102 91193697 -68406086 + MYSERV6-int LTR ERVK 7108 7715 -1244 2 1280 201 74 0 0 chr3 91194768 91194795 -68404988 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 2 1280 1008 114 0 0 chr3 91194797 91194937 -68404846 - B1_Mm SINE Alu -6 141 2 2 1280 1471 202 15 62 chr3 91195723 91196060 -68403723 + ORR1A4 LTR MaLR 1 321 -8 2 1280 2794 213 61 17 chr3 91196064 91196770 -68403013 + ORR1A4-int LTR MaLR 1 737 -1226 2 1280 410 331 40 46 chr3 91196667 91196841 -68402942 + MT2B LTR ERVL 65 237 -364 2 1280 801 327 36 17 chr3 91196856 91197158 -68402625 + ORR1A4 LTR MaLR 63 370 0 2 1280 4755 73 0 14 chr3 91197171 91197808 -68401975 + L1Md_F2 LINE L1 5943 6570 -12 2 1280 271 264 0 0 chr3 91198016 91198088 -68401695 + L1M1 LINE L1 5541 5612 -691 2 1280 720 141 0 0 chr3 91198243 91198364 -68401419 + (TA)n Simple_repeat Simple_repeat 2 122 0 2 1280 238 62 0 0 chr3 91198364 91198396 -68401387 + (TG)n Simple_repeat Simple_repeat 2 33 0 2 1280 540 310 19 24 chr3 91198398 91198429 -68401354 - MT2A LTR ERVL -40 493 465 2 1280 866 65 26 13 chr3 91198429 91198585 -68401198 + (TCTA)n Simple_repeat Simple_repeat 1 158 0 2 1280 540 310 19 24 chr3 91198585 91198761 -68401022 - MT2A LTR ERVL -69 464 287 2 1280 366 74 0 0 chr3 91198768 91198822 -68400961 + (TA)n Simple_repeat Simple_repeat 2 55 0 2 1280 212 188 16 0 chr3 91198859 91198923 -68400860 + (TA)n Simple_repeat Simple_repeat 1 65 0 2 1280 697 300 66 62 chr3 91198996 91199316 -68400467 + RMER12 LTR ERVK 1002 1322 0 2 1280 443 256 25 8 chr3 91199316 91199434 -68400349 - MT2A LTR ERVL -366 167 48 2 1280 1324 234 14 25 chr3 91199501 91199864 -68399919 + RLTR15 LTR ERVK 1 359 0 2 1280 677 338 24 27 chr3 91200247 91200271 -68399512 - MTE2a LTR MaLR 0 379 358 2 1280 1526 119 25 8 chr3 91200271 91200516 -68399267 - L1_Mus1 LINE L1 0 6567 6319 2 1280 677 338 24 27 chr3 91200516 91200786 -68398997 - MTE2a LTR MaLR -22 357 87 2 1280 363 377 67 34 chr3 91200877 91201352 -68398431 - L1M2 LINE L1 -744 5399 4909 2 1280 588 319 49 16 chr3 91201433 91201618 -68398165 + B3 SINE B2 26 216 0 2 1280 266 288 32 48 chr3 91201646 91201770 -68398013 - L1_Mur3 LINE L1 -1071 4809 4688 2 1280 462 36 0 0 chr3 91201871 91201927 -68397856 + (TA)n Simple_repeat Simple_repeat 2 57 0 2 1280 10647 151 56 16 chr3 91201927 91203948 -68395835 + L1_Mm LINE L1 2115 4216 -1667 2 1280 1397 157 11 0 chr3 91203948 91204346 -68395437 + L1VL4 LINE L1 726 1129 -2430 2 1280 30891 93 11 9 chr3 91204349 91209297 -68390486 + L1Md_F2 LINE L1 631 5583 -300 2 1280 7424 70 3 5 chr3 91209301 91210299 -68389484 + L1Md_F2 LINE L1 5587 6582 0 2 1280 690 13 0 0 chr3 91210364 91210443 -68389340 + (GAAA)n Simple_repeat Simple_repeat 2 80 0 2 1280 2487 192 24 18 chr3 91210444 91211059 -68388724 + L1VL4 LINE L1 1115 1733 -1826 2 1280 18360 133 33 19 chr3 91211087 91215026 -68384757 + L1_Mus1 LINE L1 380 4375 -1508 2 1280 8664 116 7 16 chr3 91215024 91217110 -68382673 + L1_Mus1 LINE L1 4495 6566 -1 2 1280 25 0 0 0 chr3 91217153 91217178 -68382605 + AT_rich Low_complexity Low_complexity 1 25 0 2 1280 186 43 0 0 chr3 91217192 91217215 -68382568 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 2 1280 1906 147 3 29 chr3 91217230 91217573 -68382210 + L1VL4 LINE L1 1726 2059 -1500 2 1280 2488 227 22 13 chr3 91217578 91218132 -68381651 - Lx LINE L1 0 6654 6096 2 1280 2500 196 16 47 chr3 91218154 91218712 -68381071 - L1_Mur2 LINE L1 0 5877 5337 2 1280 5698 206 46 5 chr3 91218704 91220014 -68379769 - L1_Mur2 LINE L1 -1420 4457 3094 2 1280 6857 248 26 18 chr3 91220309 91222295 -68377488 - MYSERV6-int LTR ERVK -4344 4615 2407 2 1280 216 0 0 0 chr3 91222295 91222319 -68377464 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 2 1280 4440 307 50 56 chr3 91222319 91222387 -68377396 - MYSERV6-int LTR ERVK -4144 2406 2355 2 1280 2080 146 3 0 chr3 91222387 91222709 -68377074 + ORR1A2 LTR MaLR 1 323 -4 2 1280 1779 261 26 72 chr3 91222709 91223326 -68376457 - RMER16-int LTR ERVK -6328 2631 2038 2 1280 185 0 0 39 chr3 91223395 91223421 -68376362 + (TTTTC)n Simple_repeat Simple_repeat 1 25 0 2 1280 1061 109 0 0 chr3 91223421 91223568 -68376215 - B1_Mus1 SINE Alu 0 148 2 2 1280 279 207 43 54 chr3 91223597 91223689 -68376094 - RMER16-int LTR ERVK -4747 1803 1713 2 1280 453 297 33 13 chr3 91224596 91224746 -68375037 - ETnERV2-int LTR ERVK -760 6646 6494 2 1280 317 299 0 0 chr3 91224855 91224962 -68374821 - RLTR45-int LTR ERVK -469 7748 7642 2 1280 256 280 50 0 chr3 91225090 91225190 -68374593 - RLTR45-int LTR ERVK -1329 6888 6784 2 1280 1059 112 0 0 chr3 91225236 91225396 -68374387 - RLTR13D5 LTR ERVK -573 450 291 2 19 5976 151 86 94 chr3 91225434 91226845 -68372938 - RLTR45-int LTR ERVK -1173 6071 4672 2 1281 2899 82 12 7 chr3 91226833 91227238 -68372545 - ETnERV2-int LTR ERVK -1644 5762 5356 2 1281 9367 148 34 2 chr3 91227237 91228811 -68370972 - ETnERV2-int LTR ERVK -2728 4678 3055 2 1281 726 232 0 37 chr3 91228811 91228972 -68370811 - ETnERV2-int LTR ERVK -4798 2608 2454 2 1281 606 180 27 0 chr3 91228994 91229105 -68370678 - RMER16-int LTR ERVK -4204 1202 1089 2 1281 1825 176 164 64 chr3 91229110 91229627 -68370156 - RMER16-int LTR ERVK -4587 819 251 2 1281 319 344 16 5 chr3 91229770 91229954 -68369829 - RLTR45-int LTR ERVK -6878 366 181 2 1281 184 220 65 48 chr3 91230797 91230859 -68368924 - L4 LINE RTE -1667 362 300 2 1281 2367 328 67 26 chr3 91230859 91232221 -68367562 - MYSERV6-int LTR ERVK -7060 1899 483 2 1281 3208 144 0 4 chr3 91232691 91233214 -68366569 + L1_Mus2 LINE L1 6046 6566 0 2 1281 14565 163 112 3 chr3 91233909 91237535 -68362248 + L1VL1 LINE L1 495 4528 -1355 2 1281 1655 123 63 0 chr3 91237535 91237804 -68361979 + L1_Mm LINE L1 4062 4347 -1536 2 1281 34878 79 9 2 chr3 91237811 91243490 -68356293 + L1Md_F2 LINE L1 446 6122 -460 2 1281 871 117 8 0 chr3 91243567 91243695 -68356088 - B1_Mm SINE Alu -18 129 1 2 1281 435 345 39 0 chr3 91243905 91244111 -68355672 - B3 SINE B2 -2 214 1 2 1281 1496 273 72 0 chr3 91244154 91244542 -68355241 - Lx5 LINE L1 -2 7048 6633 2 1281 285 331 100 25 chr3 91244797 91245268 -68354515 + L1_Rod LINE L1 5060 5565 -282 2 1281 2477 241 40 87 chr3 91245274 91245930 -68353853 + Lx6 LINE L1 4452 5104 -2356 2 1281 643 235 17 34 chr3 91245930 91246106 -68353677 + B2_Mm2 SINE B2 5 177 -18 2 1281 2477 241 40 87 chr3 91246106 91246894 -68352889 + Lx6 LINE L1 5105 5890 -1570 2 1281 31 26 0 0 chr3 91247045 91247083 -68352700 + AT_rich Low_complexity Low_complexity 1 38 0 2 1281 2303 167 40 16 chr3 91248213 91248640 -68351143 - Lx LINE L1 0 6654 6218 2 1281 4029 137 2 2 chr3 91248640 91249306 -68350477 + Lx LINE L1 5544 6209 -445 2 1281 11008 123 9 27 chr3 91250299 91252956 -68346827 + L1Md_F2 LINE L1 275 2850 -3033 2 1281 918 70 14 14 chr3 91253230 91253375 -68346408 + L1Md_F2 LINE L1 6437 6581 -1 2 1281 17986 106 16 7 chr3 91253585 91256307 -68343476 + L1Md_F2 LINE L1 2837 5585 -298 2 1281 6304 118 22 14 chr3 91256308 91257057 -68342726 + L1Md_F2 LINE L1 5587 6351 -231 2 1281 1898 173 36 51 chr3 91257057 91257472 -68342311 + RLTR9E LTR ERVK 1 409 0 2 1281 6304 118 22 14 chr3 91257472 91257698 -68342085 + L1Md_F2 LINE L1 6352 6570 -12 2 1281 332 292 28 0 chr3 91258643 91258749 -68341034 - ORR1B2 LTR MaLR -5 373 265 2 1281 421 298 79 7 chr3 91258732 91258884 -68340899 - ORR1B2 LTR MaLR -204 163 1 2 1281 18108 151 9 18 chr3 91259589 91262909 -68336874 + L1VL2 LINE L1 742 4900 -983 2 1281 23 33 0 0 chr3 91263477 91263507 -68336276 + AT_rich Low_complexity Low_complexity 1 30 0 2 1281 416 315 9 9 chr3 91263555 91263667 -68336116 - MT2A LTR ERVL -146 387 276 3 1281 22 0 0 0 chr3 91263667 91263689 -68336094 + AT_rich Low_complexity Low_complexity 1 22 0 3 1281 956 301 119 43 chr3 91263736 91264250 -68335533 + RMER12 LTR ERVK 770 1322 0 3 1281 379 293 10 0 chr3 91264257 91264356 -68335427 - MT2A LTR ERVL -375 158 59 3 1281 1376 238 5 27 chr3 91264440 91264807 -68334976 + RLTR15 LTR ERVK 1 359 0 3 1281 226 222 0 0 chr3 91265125 91265170 -68334613 + (CA)n Simple_repeat Simple_repeat 1 45 0 3 1281 508 306 26 26 chr3 91265188 91265379 -68334404 - MTEb LTR MaLR 0 379 189 3 1281 742 192 39 11 chr3 91265380 91265559 -68334224 - MYSERV6-int LTR ERVK -4663 4296 4113 3 1281 1683 234 39 6 chr3 91265559 91266252 -68333531 + ORR1B1-int LTR MaLR 1001 1952 -11 3 1281 934 269 16 80 chr3 91266269 91266580 -68333203 + ORR1B1 LTR MaLR 41 331 -63 3 1281 1414 268 49 43 chr3 91267164 91267678 -68332105 - RMER1B Other Other -11 1055 539 3 1281 770 324 66 36 chr3 91267972 91268276 -68331507 - RMER1B Other Other -637 429 117 3 1281 436 377 70 5 chr3 91269617 91269891 -68329892 - MTE2b LTR MaLR -80 299 1 3 1281 24 32 0 0 chr3 91269903 91269934 -68329849 + AT_rich Low_complexity Low_complexity 1 31 0 3 1281 24 77 0 0 chr3 91270139 91270191 -68329592 + AT_rich Low_complexity Low_complexity 1 52 0 3 1281 289 296 54 75 chr3 91270198 91270384 -68329399 - B3A SINE B2 -16 182 1 3 1281 1100 115 16 5 chr3 91270470 91270663 -68329120 + L1_Mus3 LINE L1 6441 6635 -3 3 1281 8173 44 0 6 chr3 91270807 91271809 -68327974 - L1Md_F2 LINE L1 0 6582 5587 3 1281 260 333 75 92 chr3 91271997 91272225 -68327558 - RMER20B LTR ERVK -307 320 97 3 1281 341 270 22 93 chr3 91272236 91272375 -68327408 - RLTR23 LTR ERV1 -2 428 300 3 1281 770 302 56 24 chr3 91272397 91272774 -68327009 + RLTR22_Mur LTR ERVK 416 804 -1044 3 1281 839 251 1 2 chr3 91276002 91276189 -68323594 - ORR1C1 LTR MaLR -2 392 208 3 1281 2575 227 122 29 chr3 91276189 91276674 -68323109 + RMER12 LTR ERVK 3 555 -767 3 1281 732 241 258 42 chr3 91276674 91276836 -68322947 - RMER17C LTR ERVK 0 410 169 3 1281 875 59 8 0 chr3 91276836 91276954 -68322829 + (GA)n Simple_repeat Simple_repeat 1 119 0 3 1281 732 241 258 42 chr3 91276954 91277128 -68322655 - RMER17C LTR ERVK -242 168 1 3 1281 2575 215 49 37 chr3 91277128 91277353 -68322430 + RMER12 LTR ERVK 556 768 -554 3 1281 405 39 0 0 chr3 91277353 91277404 -68322379 + (TCCA)n Simple_repeat Simple_repeat 1 51 0 3 1281 2575 221 111 53 chr3 91277404 91277804 -68321979 + RMER12 LTR ERVK 769 1181 -141 3 1281 755 259 22 82 chr3 91277806 91278121 -68321662 + Lx2B LINE L1 6619 6914 -86 3 1281 362 233 0 58 chr3 91278110 91278247 -68321536 + Lx2B LINE L1 6854 6982 -18 3 1281 318 268 86 27 chr3 91278254 91278397 -68321386 + RMER12 LTR ERVK 1658 1810 -38 3 1281 258 230 236 22 chr3 91278437 91278526 -68321257 - ORR1C1 LTR MaLR -270 108 1 3 1281 856 255 15 15 chr3 91279256 91279515 -68320268 + L1VL2 LINE L1 526 784 -5551 3 1281 27802 128 8 11 chr3 91279557 91285114 -68314669 - L1_Mus2 LINE L1 -2 6564 1025 3 1281 4601 60 2 7 chr3 91285107 91285715 -68314068 - L1_Mm LINE L1 -920 4963 4359 3 1281 1078 199 67 9 chr3 91285715 91285938 -68313845 - L1_Mus2 LINE L1 -6000 638 403 3 1281 250 211 86 62 chr3 91286030 91286111 -68313672 - RLTR15 LTR ERVK -160 199 117 3 1281 1586 253 77 28 chr3 91286112 91286648 -68313135 - L1Md_F LINE L1 -5660 859 298 3 1281 2510 223 44 20 chr3 91286657 91287251 -68312532 + MYSERV6-int LTR ERVK 7108 7715 -1244 3 1281 21 0 0 0 chr3 91287866 91287887 -68311896 + AT_rich Low_complexity Low_complexity 1 21 0 3 1281 247 34 0 106 chr3 91288848 91288914 -68310869 + (TTTTG)n Simple_repeat Simple_repeat 2 60 0 3 1281 1111 145 5 0 chr3 91288962 91289148 -68310635 - L1_Mus1 LINE L1 -1 6566 6380 3 1281 1355 205 20 64 chr3 91289415 91289759 -68310024 + ORR1A4 LTR MaLR 1 329 0 3 1281 2964 220 61 19 chr3 91289759 91290513 -68309270 + ORR1A4-int LTR MaLR 1 786 -1177 3 1281 458 287 40 58 chr3 91290361 91290535 -68309248 + MT2B LTR ERVL 67 237 -364 3 1281 730 338 40 26 chr3 91290550 91290854 -68308929 + ORR1A4 LTR MaLR 63 370 0 3 1281 337 362 66 18 chr3 91291348 91291621 -68308162 + L1M2 LINE L1 5115 5400 -743 3 1281 360 0 0 0 chr3 91291673 91291713 -68308070 + (TA)n Simple_repeat Simple_repeat 2 41 0 3 1281 696 292 62 58 chr3 91291793 91292084 -68307699 + RMER12 LTR ERVK 1002 1293 -29 3 1281 416 248 24 49 chr3 91292113 91292236 -68307547 - MT2A LTR ERVL -366 167 48 3 1281 1552 232 6 0 chr3 91292309 91292666 -68307117 + RLTR15 LTR ERVK 1 359 0 3 1281 718 330 30 37 chr3 91293044 91293067 -68306716 - MTE2a LTR MaLR 0 379 357 3 1281 1481 112 25 12 chr3 91293067 91293312 -68306471 - L1_Mus1 LINE L1 -1 6566 6319 3 1281 718 330 30 37 chr3 91293312 91293587 -68306196 - MTE2a LTR MaLR -23 356 83 3 1281 233 306 45 9 chr3 91294086 91294198 -68305585 - L1M3 LINE L1 -1178 4962 4847 3 1281 26904 132 6 20 chr3 91294249 91296659 -68303124 - L1Md_F2 LINE L1 0 6582 4319 3 1281 3245 32 9 40 chr3 91296659 91297083 -68302700 + IAPLTR2a LTR ERVK 1 411 0 3 1281 26904 127 25 31 chr3 91297083 91301130 -68298653 - L1Md_F2 LINE L1 -1565 4318 265 3 1281 908 166 0 0 chr3 91301131 91301306 -68298477 - MusHAL1 LINE L1 -642 2070 1896 3 1281 206 121 186 17 chr3 91301537 91301596 -68298187 + L3 LINE CR1 1617 1685 -2804 3 1281 4757 247 32 21 chr3 91301663 91303013 -68296770 - MYSERV6-int LTR ERVK -4447 4512 3148 3 1281 25231 166 20 39 chr3 91303067 91308175 -68291608 + L1_Mus3 LINE L1 277 5300 -583 3 1281 308 91 0 0 chr3 91308175 91308219 -68291564 + B1_Mus2 SINE Alu 95 138 -9 3 1281 221 0 35 0 chr3 91308219 91308248 -68291535 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 3 1281 25231 143 7 14 chr3 91308248 91309403 -68290380 + L1_Mus3 LINE L1 5301 6780 -228 3 1281 262 331 92 29 chr3 91311299 91311415 -68288368 + B3 SINE B2 30 159 -57 3 1281 576 0 0 0 chr3 91311415 91311479 -68288304 + (CA)n Simple_repeat Simple_repeat 2 65 0 3 1281 262 331 92 29 chr3 91311479 91311536 -68288247 + B3 SINE B2 160 213 -3 3 1281 285 198 11 23 chr3 91312456 91312544 -68287239 + CT-rich Low_complexity Low_complexity 2 88 0 3 1281 1464 249 14 23 chr3 91312653 91313006 -68286777 - RLTR19C LTR ERVK -6 500 151 3 1281 3781 16 0 0 chr3 91313016 91313449 -68286334 - L1Md_A LINE L1 -1 6581 6149 3 1281 6113 13 0 0 chr3 91313449 91314149 -68285634 + L1_Mm LINE L1 3917 4616 -1267 3 1281 274 167 0 0 chr3 91314171 91314219 -68285564 - RLTR19C LTR ERVK -458 48 1 3 1281 2537 229 53 26 chr3 91314224 91314886 -68284897 + MYSERV6-int LTR ERVK 6734 7413 -1546 3 1281 261 0 0 0 chr3 91314892 91314921 -68284862 + (CAAAC)n Simple_repeat Simple_repeat 2 30 0 3 1281 459 172 0 0 chr3 91314922 91315056 -68284727 + A-rich Low_complexity Low_complexity 4 137 0 3 1281 891 191 120 0 chr3 91315056 91315265 -68284518 + MYSERV6-int LTR ERVK 7421 7654 -1305 3 1281 29167 102 16 24 chr3 91315276 91320373 -68279410 + L1Md_F2 LINE L1 505 5562 -321 3 1281 180 0 0 0 chr3 91320373 91320393 -68279390 + (CA)n Simple_repeat Simple_repeat 1 20 0 3 1281 29167 96 5 27 chr3 91320393 91320416 -68279367 + L1Md_F2 LINE L1 5563 5585 -298 3 1281 6573 106 15 18 chr3 91320416 91321401 -68278382 + L1Md_F2 LINE L1 5587 6568 -14 3 1281 361 183 0 0 chr3 91321419 91321490 -68278293 + MYSERV6-int LTR ERVK 7645 7715 -1244 3 1281 23 33 0 0 chr3 91322667 91322697 -68277086 + AT_rich Low_complexity Low_complexity 1 30 0 3 1281 566 109 0 11 chr3 91322955 91323048 -68276735 + (TA)n Simple_repeat Simple_repeat 2 93 0 3 1281 475 329 77 6 chr3 91323050 91323218 -68276565 - MT2A LTR ERVL -77 456 277 3 1281 23 0 0 0 chr3 91323218 91323241 -68276542 + AT_rich Low_complexity Low_complexity 1 23 0 3 1281 352 252 119 18 chr3 91323320 91323429 -68276354 + RMER12 LTR ERVK 769 888 -434 3 1281 865 236 72 69 chr3 91323450 91323741 -68276042 + RMER12 LTR ERVK 1002 1293 -29 3 1281 339 293 26 8 chr3 91323770 91323887 -68275896 - MT2A LTR ERVL -366 167 49 3 1281 1150 238 81 0 chr3 91323960 91324292 -68275491 + RLTR15 LTR ERVK 1 359 0 3 1281 525 299 21 26 chr3 91324672 91324864 -68274919 - MTEa LTR MaLR 0 379 189 3 1281 688 247 34 0 chr3 91324865 91325043 -68274740 - MYSERV6-int LTR ERVK -4663 4296 4113 3 1281 1920 218 38 28 chr3 91325043 91325751 -68274032 + ORR1A4-int LTR MaLR 1002 1960 -3 3 1281 1149 181 21 184 chr3 91325749 91326080 -68273703 + ORR1A4 LTR MaLR 1 277 -52 3 1281 1148 269 31 31 chr3 91326286 91326635 -68273148 - RMER1B Other Other -177 889 541 3 1281 833 330 17 36 chr3 91326888 91327250 -68272533 - RMER1B Other Other -595 471 117 3 1281 24 32 0 0 chr3 91327877 91327908 -68271875 + AT_rich Low_complexity Low_complexity 1 31 0 3 1281 548 312 97 70 chr3 91328616 91328916 -68270867 - MTE2b LTR MaLR -71 308 1 3 1281 2449 86 3 6 chr3 91328979 91329317 -68270466 - IAPLTR4 LTR ERVK -8 337 1 3 1281 6164 254 48 36 chr3 91329317 91331832 -68267951 - IAPLTR3-int LTR ERVK -351 7329 3468 3 1281 813 96 35 49 chr3 91331941 91332084 -68267699 - MMERVK10C-int LTR ERVK -2911 4670 4530 3 1281 438 206 9 36 chr3 91332110 91332221 -68267562 - IAPLTR3-int LTR ERVK -2380 2464 2357 3 1281 6603 116 56 11 chr3 91332226 91333611 -68266172 - ETnERV3-int LTR ERVK -3135 4271 2735 3 1281 435 239 88 0 chr3 91333711 91333824 -68265959 - RLTR19-int LTR ERVK -5077 1060 938 3 1281 278 305 105 15 chr3 91333827 91333960 -68265823 - RLTR19-int LTR ERVK -5469 668 524 3 1281 8375 23 1 0 chr3 91334002 91335622 -68264161 - L1Md_T LINE L1 -1 6581 4960 3 1281 1779 83 20 4 chr3 91335622 91335875 -68263908 + RLTR1C LTR ERV1 247 503 0 3 1281 368 266 11 0 chr3 91335933 91336027 -68263756 - RLTR15 LTR ERVK -264 95 1 3 1281 228 355 52 31 chr3 91336084 91336180 -68263603 + MTE2a LTR MaLR 32 129 -250 3 1281 491 221 11 0 chr3 91336107 91336202 -68263581 + MT2A LTR ERVL 57 152 -381 3 1281 258 320 86 24 chr3 91336215 91336376 -68263407 - RMER12 LTR ERVK 0 1322 1106 3 1281 876 89 0 0 chr3 91336376 91336499 -68263284 + (GAAA)n Simple_repeat Simple_repeat 2 124 0 3 1281 225 344 66 104 chr3 91336499 91336605 -68263178 - RMER12 LTR ERVK -217 1105 1009 3 1281 1005 87 9 19 chr3 91336611 91336823 -68262960 + (TC)n Simple_repeat Simple_repeat 1 209 0 3 1281 1559 195 158 44 chr3 91336823 91337527 -68262256 - RMER12 LTR ERVK -535 787 4 3 1281 1349 258 69 0 chr3 91337528 91337862 -68261921 + MT2A LTR ERVL 160 516 -17 3 1281 405 0 0 0 chr3 91338025 91338070 -68261713 + (CA)n Simple_repeat Simple_repeat 1 45 0 3 1281 21 57 0 0 chr3 91338436 91338471 -68261312 + AT_rich Low_complexity Low_complexity 1 35 0 3 1281 717 278 21 0 chr3 91339981 91340165 -68259618 - ORR1C1 LTR MaLR 0 378 191 3 1281 2930 231 120 85 chr3 91340165 91340656 -68259127 + RMER12 LTR ERVK 1 555 -767 3 1281 820 200 265 59 chr3 91340656 91340799 -68258984 - RMER17C LTR ERVK 0 410 214 3 1281 630 0 0 0 chr3 91340799 91340869 -68258914 + (GA)n Simple_repeat Simple_repeat 2 71 0 3 1281 820 200 265 59 chr3 91340869 91341065 -68258718 - RMER17C LTR ERVK -197 213 2 3 1281 2930 229 46 108 chr3 91341065 91341275 -68258508 + RMER12 LTR ERVK 556 767 -555 3 1281 402 21 0 0 chr3 91341275 91341322 -68258461 + (TCCA)n Simple_repeat Simple_repeat 1 47 0 3 1281 2930 229 46 108 chr3 91341322 91341521 -68258262 + RMER12 LTR ERVK 768 957 -365 3 1281 1176 111 0 0 chr3 91341521 91341701 -68258082 + (CA)n Simple_repeat Simple_repeat 1 180 0 3 1281 2930 231 64 103 chr3 91341701 91342014 -68257769 + RMER12 LTR ERVK 958 1161 -161 3 1281 933 228 7 108 chr3 91342015 91342310 -68257473 + Lx2B LINE L1 6619 6883 -117 3 1281 390 238 0 47 chr3 91342289 91342439 -68257344 + Lx2B LINE L1 6840 6982 -18 3 1281 313 271 55 18 chr3 91342442 91342551 -68257232 + RMER12 LTR ERVK 1698 1810 -38 3 1281 688 247 152 20 chr3 91342550 91342748 -68257035 - ORR1C1 LTR MaLR -154 224 1 3 1281 242 226 104 82 chr3 91343373 91343508 -68256275 + L1VL2 LINE L1 282 419 -5916 3 1281 5921 166 12 31 chr3 91343483 91345085 -68254698 + L1VL4 LINE L1 482 2050 -1509 3 1281 1578 199 21 15 chr3 91345086 91345099 -68254684 - Lx3_Mus LINE L1 -1090 5919 5907 3 1281 2783 204 5 2 chr3 91345099 91345654 -68254129 - Lx LINE L1 -2 6652 6096 4 1281 2876 184 6 8 chr3 91345654 91346215 -68253568 - Lx3_Mus LINE L1 -1103 5906 5346 3 1281 6893 171 15 12 chr3 91346210 91347570 -68252213 - Lx3_Mus LINE L1 -1420 4457 3095 3 1281 369 0 0 0 chr3 91347579 91347620 -68252163 + (CAAAA)n Simple_repeat Simple_repeat 2 42 0 4 1281 3177 251 40 16 chr3 91347882 91348775 -68251008 - MYSERV6-int LTR ERVK -4344 4615 3701 4 1281 511 140 0 53 chr3 91348775 91348926 -68250857 + (TA)n Simple_repeat Simple_repeat 1 143 0 4 1281 245 128 0 0 chr3 91348956 91349003 -68250780 - L1_Mus2 LINE L1 0 6566 6520 4 1281 3835 239 16 48 chr3 91349005 91350097 -68249686 - MYSERV6-int LTR ERVK -5276 3683 2626 4 1281 764 179 0 7 chr3 91350097 91350232 -68249551 + ORR1A2 LTR MaLR 1 134 -193 4 1281 4618 153 22 77 chr3 91350232 91351059 -68248724 + RLTR13D6 LTR ERVK 1 788 -114 4 1281 3804 61 6 2 chr3 91351059 91351550 -68248233 + L1Md_F3 LINE L1 6092 6584 0 4 1281 4618 153 22 77 chr3 91351550 91351649 -68248134 + RLTR13D6 LTR ERVK 789 876 -26 4 1281 1295 136 0 0 chr3 91351668 91351859 -68247924 + ORR1A2 LTR MaLR 133 323 -4 4 1281 4866 292 62 33 chr3 91351863 91353981 -68245802 - MYSERV6-int LTR ERVK -6329 2630 452 4 1281 7135 168 71 10 chr3 91355026 91357183 -68242600 + L1VL1 LINE L1 411 2702 -3181 4 1282 1929 106 16 0 chr3 91357185 91357505 -68242278 - MusHAL1 LINE L1 -2193 519 195 4 1282 3101 193 2 42 chr3 91357498 91358121 -68241662 - L1VL1 LINE L1 -5613 809 212 4 1282 637 241 7 7 chr3 91358113 91358259 -68241524 - Lx5 LINE L1 -122 6928 6783 4 1282 6384 197 15 27 chr3 91358261 91359834 -68239949 - L1_Mur2 LINE L1 -2004 3873 2320 4 1282 2508 221 49 56 chr3 91359857 91360748 -68239035 - L1_Mur2 LINE L1 -4446 1431 530 4 1282 286 331 100 19 chr3 91361498 91361658 -68238125 - RMER12 LTR ERVK -146 1176 1004 4 1282 767 280 20 45 chr3 91361685 91361932 -68237851 - MYSERV6-int LTR ERVK -6625 294 54 4 1282 482 319 70 49 chr3 91362104 91362388 -68237395 - RLTR26 LTR ERVK -233 409 120 4 1282 914 234 74 3 chr3 91362884 91363079 -68236704 + L1_Mur1 LINE L1 1464 1664 -4222 4 1282 254 51 0 49 chr3 91363079 91363120 -68236663 + (TAA)n Simple_repeat Simple_repeat 3 41 0 4 1282 914 234 74 3 chr3 91363120 91363220 -68236563 + L1_Mur1 LINE L1 1665 1779 -4107 4 1282 978 312 28 31 chr3 91363229 91363589 -68236194 + RLTR11A LTR ERVK 170 528 0 4 1282 3559 87 4 2 chr3 91364292 91364790 -68234993 - L1_Mm LINE L1 -1056 4827 4329 4 1282 7314 58 41 1 chr3 91364786 91365992 -68233791 - L1Md_F3 LINE L1 0 6584 5330 4 1282 2453 97 3 0 chr3 91365992 91366323 -68233460 - IAPEY3_LTR LTR ERVK 0 332 1 4 1282 3406 84 56 0 chr3 91366323 91367055 -68232728 - IAPEY3-int LTR ERVK 0 7680 6908 4 1282 20839 124 7 4 chr3 91367038 91370085 -68229698 - IAPEY3-int LTR ERVK -4376 3304 251 4 1282 19944 71 6 0 chr3 91370371 91373774 -68226009 - L1Md_F2 LINE L1 -1 6581 3166 4 1282 4773 102 1 1 chr3 91373774 91374459 -68225324 + L1Md_F2 LINE L1 4902 5586 -297 4 1282 6468 115 3 15 chr3 91374460 91375467 -68224316 + L1Md_F2 LINE L1 5588 6582 0 4 1282 1067 149 27 0 chr3 91375823 91376011 -68223772 + B2_Mm2 SINE B2 1 193 -2 4 1282 294 36 73 0 chr3 91376013 91376068 -68223715 + (CAAA)n Simple_repeat Simple_repeat 2 60 0 4 1282 32541 84 1 16 chr3 91378578 91383981 -68215802 + L1Md_F2 LINE L1 269 5586 -297 4 1282 7891 52 3 1 chr3 91383981 91384963 -68214820 + L1Md_F2 LINE L1 5587 6570 -12 4 1282 248 306 145 70 chr3 91386777 91386918 -68212865 + B3 SINE B2 1 155 -61 4 1282 549 0 0 0 chr3 91386918 91386979 -68212804 + (CA)n Simple_repeat Simple_repeat 2 62 0 4 1282 1050 70 0 0 chr3 91386979 91387135 -68212648 + (GA)n Simple_repeat Simple_repeat 2 158 0 4 1282 248 306 145 70 chr3 91387135 91387192 -68212591 + B3 SINE B2 156 214 -2 4 1282 3186 19 0 0 chr3 91388265 91388633 -68211150 + L1Md_A LINE L1 6214 6581 -1 4 1282 276 197 16 47 chr3 91388953 91389081 -68210702 + CT-rich Low_complexity Low_complexity 3 126 0 4 1282 32 43 0 0 chr3 91389747 91389793 -68209990 + AT_rich Low_complexity Low_complexity 1 46 0 4 1282 620 324 27 0 chr3 91390269 91390454 -68209329 - B3 SINE B2 0 216 27 4 1282 669 319 42 8 chr3 91390511 91390770 -68209013 - Lx5 LINE L1 0 7050 6783 4 1282 820 215 5 0 chr3 91390771 91390971 -68208812 - L1_Mur2 LINE L1 -2003 3874 3674 4 1282 3305 215 28 15 chr3 91390971 91391181 -68208602 - L1_Mur2 LINE L1 -2517 3360 3155 4 1282 216 0 0 0 chr3 91391181 91391205 -68208578 + (TTTTG)n Simple_repeat Simple_repeat 1 24 0 4 1282 3305 215 28 15 chr3 91391205 91391932 -68207851 - L1_Mur2 LINE L1 -2723 3154 2412 4 1282 331 277 141 6 chr3 91391944 91392100 -68207683 - L1_Mur2 LINE L1 -6380 706 530 4 1282 330 331 102 0 chr3 91392868 91393025 -68206758 - RMER12 LTR ERVK -146 1176 1004 4 1282 234 81 0 0 chr3 91393059 91393096 -68206687 + (T)n Simple_repeat Simple_repeat 1 37 0 4 1282 210 170 21 0 chr3 91393829 91393876 -68205907 + T-rich Low_complexity Low_complexity 2 49 0 4 1282 985 122 0 20 chr3 91393877 91394027 -68205756 - B1_Mus2 SINE Alu 0 147 1 4 1282 24 32 0 0 chr3 91394089 91394120 -68205663 + AT_rich Low_complexity Low_complexity 1 31 0 4 1282 241 256 60 120 chr3 91394141 91394274 -68205509 - RMER12B LTR ERVK -131 1273 1149 4 1282 756 276 3 112 chr3 91394459 91394842 -68204941 + MusHAL1 LINE L1 248 588 -2124 4 1282 1024 293 36 34 chr3 91394842 91395199 -68204584 + RLTR11A LTR ERVK 170 527 -1 4 1282 845 272 8 40 chr3 91396246 91396495 -68203288 - MERVK26-int LTR ERVK -6625 294 54 4 1282 424 302 96 18 chr3 91396814 91397033 -68202750 - RLTR26 LTR ERVK -287 355 120 4 1282 233 259 146 53 chr3 91397238 91397389 -68202394 - RMER12B LTR ERVK -162 1242 1078 4 1282 803 255 17 89 chr3 91397516 91397865 -68201918 + L1_Mur1 LINE L1 1457 1780 -4106 4 1282 252 357 0 43 chr3 91397874 91397991 -68201792 + RLTR11A LTR ERVK 170 281 -247 4 1282 23 78 0 0 chr3 91397998 91398049 -68201734 + AT_rich Low_complexity Low_complexity 1 51 0 4 1282 753 246 56 19 chr3 91398057 91398272 -68201511 + RLTR11A LTR ERVK 306 528 0 4 1282 11663 90 5 1 chr3 91398970 91400631 -68199152 - L1Md_F2 LINE L1 -1055 4828 3162 4 1282 4948 88 3 1 chr3 91400629 91401311 -68198472 + L1Md_F2 LINE L1 4904 5586 -297 4 1282 7020 94 9 7 chr3 91401311 91402305 -68197478 + L1Md_F2 LINE L1 5587 6582 0 4 1282 1146 128 27 0 chr3 91402659 91402847 -68196936 + B2_Mm2 SINE B2 1 193 -2 4 1282 22 56 0 0 chr3 91403673 91403709 -68196074 + AT_rich Low_complexity Low_complexity 1 36 0 4 1282 358 363 58 5 chr3 91403709 91403900 -68195883 - MTE2b LTR MaLR -26 353 153 4 1282 316 325 34 34 chr3 91404385 91404503 -68195280 - B3A SINE B2 -80 118 1 4 1282 622 265 108 53 chr3 91404831 91405186 -68194597 - RMER20B LTR ERVK -186 441 82 4 1282 2453 93 0 6 chr3 91405794 91406128 -68193655 - IAPEY3_LTR LTR ERVK 0 332 1 4 1282 5202 108 5 29 chr3 91406128 91406926 -68192857 - IAPEy-int LTR ERVK 0 7513 6735 4 1282 3508 77 0 2 chr3 91406916 91407371 -68192412 - IAPEy-int LTR ERVK -1367 6214 5761 4 1282 3190 96 2 18 chr3 91407362 91407809 -68191974 - IAPEy-int LTR ERVK -1939 5642 5203 4 1282 570 81 47 66 chr3 91408064 91408170 -68191613 - IAPEy-int LTR ERVK -2911 4670 4567 4 1282 396 107 0 0 chr3 91408169 91408225 -68191558 - IAPEy-int LTR ERVK -3784 3622 3567 4 1282 659 193 0 0 chr3 91408251 91408370 -68191413 - IAPEy-int LTR ERVK -4653 2753 2635 4 1282 400 266 88 0 chr3 91408486 91408599 -68191184 - RMER16-int LTR ERVK -5077 1060 938 4 1282 1539 203 99 37 chr3 91408604 91409085 -68190698 - RMER16-int LTR ERVK -4750 656 251 4 1282 853 166 39 64 chr3 91409197 91409446 -68190337 - IAPEY3-int LTR ERVK -6629 952 619 4 1282 3492 21 4 116 chr3 91409446 91409937 -68189846 + RLTR10C LTR ERVK 1 436 0 4 1282 853 116 32 13 chr3 91409937 91410106 -68189677 - IAPEY3-int LTR ERVK -7062 618 409 4 1282 2111 163 30 32 chr3 91410514 91410947 -68188836 - IAPEY3-int LTR ERVK -7059 454 1 4 1282 2462 96 0 3 chr3 91410947 91411280 -68188503 - IAPEY3_LTR LTR ERVK 0 332 1 4 1282 467 17 17 0 chr3 91414527 91414587 -68185196 + (CA)n Simple_repeat Simple_repeat 2 62 0 4 1282 588 98 0 0 chr3 91414587 91414689 -68185094 + (GA)n Simple_repeat Simple_repeat 1 102 0 4 1282 389 256 12 25 chr3 91416140 91416386 -68183397 + CT-rich Low_complexity Low_complexity 1 242 0 4 1282 237 302 28 4 chr3 91417352 91417465 -68182318 + L1M2 LINE L1 4721 4839 -1307 4 1282 600 330 27 0 chr3 91417500 91417685 -68182098 - B3 SINE B2 0 216 27 4 1282 607 298 53 10 chr3 91417784 91417991 -68181792 - Lx5 LINE L1 -43 7007 6792 4 1282 5332 206 20 39 chr3 91418031 91419495 -68180288 - L1_Mur2 LINE L1 -2033 3844 2408 4 1282 270 302 76 4 chr3 91419497 91419662 -68180121 - L1_Mur2 LINE L1 -6337 749 684 4 1282 803 187 12 18 chr3 91419777 91419946 -68179837 + L1_Mus1 LINE L1 6400 6567 0 4 1282 7294 78 4 1 chr3 91419984 91420947 -68178836 + L1Md_F2 LINE L1 5588 6553 -29 4 1282 369 299 75 0 chr3 91420950 91421084 -68178699 + RLTR11A LTR ERVK 384 527 -1 4 1282 311 327 100 12 chr3 91422950 91423120 -68176663 - MTE2a LTR MaLR -10 369 185 4 1282 388 325 24 54 chr3 91423663 91423829 -68175954 - B3A SINE B2 -36 162 2 4 1282 678 235 127 13 chr3 91424212 91424449 -68175334 - RMER20B LTR ERVK -234 393 130 4 1282 1710 198 49 139 chr3 91426858 91427036 -68172747 + L1VL4 LINE L1 751 921 -5736 4 1282 182 37 37 0 chr3 91427036 91427063 -68172720 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 4 1282 24927 148 12 29 chr3 91427063 91430975 -68168808 + L1VL4 LINE L1 922 4738 -1145 4 1282 207 0 0 0 chr3 91430975 91430998 -68168785 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 4 1282 24927 144 11 21 chr3 91430998 91431202 -68168581 + L1VL4 LINE L1 4739 4959 -924 4 1282 2832 57 52 0 chr3 91431202 91431571 -68168212 + RLTR10 LTR ERVK 1 388 -2 4 1282 24927 144 11 21 chr3 91431571 91432228 -68167555 + L1VL4 LINE L1 4960 5612 -271 4 1282 301 325 76 29 chr3 91433513 91433622 -68166161 + B3 SINE B2 38 156 -60 4 1282 435 38 0 0 chr3 91433622 91433675 -68166108 + (CA)n Simple_repeat Simple_repeat 1 53 0 4 1282 301 325 76 29 chr3 91433675 91433736 -68166047 + B3 SINE B2 157 216 0 4 1282 419 250 59 26 chr3 91435148 91435300 -68164483 + CT-rich Low_complexity Low_complexity 1 157 0 4 1282 629 314 44 10 chr3 91436432 91436638 -68163145 - B3 SINE B2 0 216 4 4 1282 717 291 54 16 chr3 91436674 91436932 -68162851 - Lx5 LINE L1 0 7050 6783 4 1282 5550 214 21 8 chr3 91436933 91437648 -68162135 - L1_Mur2 LINE L1 -2003 3874 3154 4 1282 393 22 0 0 chr3 91437648 91437694 -68162089 + (TTTTG)n Simple_repeat Simple_repeat 4 49 0 4 1282 5550 214 21 8 chr3 91437694 91438423 -68161360 - L1_Mur2 LINE L1 -2724 3153 2413 4 1282 333 274 154 19 chr3 91438435 91438591 -68161192 - L1_Mur2 LINE L1 -6380 706 530 4 1282 759 227 115 3 chr3 91439637 91439826 -68159957 + L1_Mur1 LINE L1 1450 1640 -2274 4 1282 378 75 29 15 chr3 91439826 91439894 -68159889 + (TAA)n Simple_repeat Simple_repeat 2 70 0 4 1282 759 225 134 4 chr3 91439894 91440009 -68159774 + L1_Mur1 LINE L1 1641 1789 -2125 4 1282 1118 279 33 36 chr3 91440009 91440369 -68159414 + RLTR11A LTR ERVK 170 528 0 4 1282 468 249 147 15 chr3 91441644 91441848 -68157935 + RMER20B LTR ERVK 183 413 -214 4 1282 22 35 0 0 chr3 91442164 91442193 -68157590 + AT_rich Low_complexity Low_complexity 1 29 0 4 1282 327 24 0 0 chr3 91443118 91443160 -68156623 + RLTR10B LTR ERVK 1 42 -250 4 1282 1966 46 0 121 chr3 91443196 91443519 -68156264 + RLTR10B LTR ERVK 9 292 0 4 1282 2475 76 0 0 chr3 91443519 91443836 -68155947 + MMERVK10C-int LTR ERVK 1 317 -7264 4 1282 21506 61 7 1 chr3 91444118 91446818 -68152965 + MMERVK10C-int LTR ERVK 3095 5810 -1771 4 1282 288 143 0 0 chr3 91446804 91446853 -68152930 + MMERVK10C-int LTR ERVK 6646 6694 -887 4 1282 7181 52 2 29 chr3 91446879 91447801 -68151982 + MMERVK10C-int LTR ERVK 6685 7581 0 4 1282 327 24 0 0 chr3 91447801 91447843 -68151940 + RLTR10B LTR ERVK 1 42 -250 4 1282 1965 96 83 46 chr3 91447878 91448226 -68151557 + RLTR10B2 LTR ERVK 5 365 0 4 1282 1032 303 33 33 chr3 91448899 91449258 -68150525 - RLTR11A LTR ERVK 0 528 170 4 1282 683 268 5 126 chr3 91449258 91449646 -68150137 - L1_Mur1 LINE L1 -4096 1790 1450 4 1282 274 327 54 108 chr3 91449791 91450014 -68149769 + RMER12B LTR ERVK 1122 1332 -72 4 1282 1121 82 7 0 chr3 91450072 91450218 -68149565 + B1_Mus2 SINE Alu 1 147 0 4 1282 200 100 75 0 chr3 91450218 91450258 -68149525 + A-rich Low_complexity Low_complexity 3 45 0 4 1282 264 339 43 67 chr3 91450375 91450584 -68149199 + RLTR26 LTR ERVK 207 410 -232 4 1282 2445 216 27 9 chr3 91451263 91451936 -68147847 + L1_Mur2 LINE L1 2411 3095 -2782 4 1282 612 74 0 0 chr3 91451934 91452015 -68147768 - L1Md_F2 LINE L1 -618 5265 5185 4 1282 2282 123 0 14 chr3 91451993 91452347 -68147436 + L1Md_F2 LINE L1 5237 5585 -298 4 1282 6764 106 6 6 chr3 91452348 91453329 -68146454 + L1Md_F2 LINE L1 5587 6567 -15 4 1282 21 0 0 0 chr3 91453329 91453350 -68146433 + AT_rich Low_complexity Low_complexity 1 21 0 5 1282 382 213 33 0 chr3 91453350 91453470 -68146313 + L1Md_F LINE L1 997 1190 -5429 5 1282 30998 89 2 0 chr3 91453463 91458708 -68141075 + L1Md_F2 LINE L1 330 5586 -297 5 1282 7778 58 3 3 chr3 91458709 91459692 -68140091 + L1Md_F2 LINE L1 5588 6570 -12 5 1282 20507 127 5 202 chr3 91459704 91465170 -68134613 + L1Md_F2 LINE L1 1198 5586 -297 5 1282 7722 61 2 0 chr3 91465170 91466150 -68133633 + L1Md_F2 LINE L1 5587 6568 -14 5 1282 279 190 85 69 chr3 91466155 91466285 -68133498 + L1_Mur2 LINE L1 1344 1475 -4402 5 1282 5890 212 11 41 chr3 91466258 91467848 -68131935 + L1_Mur2 LINE L1 2320 3861 -2016 5 1282 773 274 14 23 chr3 91467861 91468081 -68131702 + Lx5 LINE L1 6783 7000 -50 5 1282 230 292 28 103 chr3 91468110 91468217 -68131566 + B2_Mm2 SINE B2 27 125 -70 5 1282 215 353 8 8 chr3 91469344 91469461 -68130322 + GA-rich Low_complexity Low_complexity 2 118 0 5 1282 239 286 53 80 chr3 91469474 91469628 -68130155 - RMER17A LTR ERVK -333 418 264 5 1282 1219 73 6 11 chr3 91469628 91469809 -68129974 + (GGGAGA)n Simple_repeat Simple_repeat 1 180 0 5 1282 239 286 53 80 chr3 91469809 91469954 -68129829 - RMER17A LTR ERVK -488 263 127 5 1282 279 0 0 0 chr3 91470731 91470762 -68129021 + (TG)n Simple_repeat Simple_repeat 2 32 0 5 1282 22 35 0 0 chr3 91471224 91471253 -68128530 + AT_rich Low_complexity Low_complexity 1 29 0 5 1282 186 71 0 0 chr3 91471294 91471322 -68128461 + (TG)n Simple_repeat Simple_repeat 2 29 0 5 1282 6506 125 4 1 chr3 91473216 91474532 -68125251 - L1_Mus1 LINE L1 0 6567 5249 5 1282 485 93 80 0 chr3 91474527 91474602 -68125181 + L1_Mus1 LINE L1 5185 5265 -618 5 1282 2267 230 28 12 chr3 91474595 91475273 -68124510 - L1_Mur2 LINE L1 -2778 3099 2411 5 1282 481 259 151 24 chr3 91475278 91475444 -68124339 - L1_Mur2 LINE L1 -6373 713 527 5 1282 910 112 30 24 chr3 91475557 91475722 -68124061 + L1Md_F2 LINE L1 6407 6572 -10 5 1282 208 95 0 45 chr3 91475747 91475791 -68123992 + (TTTG)n Simple_repeat Simple_repeat 3 44 0 5 1282 1100 96 7 0 chr3 91475791 91475937 -68123846 - B1_Mus2 SINE Alu 0 147 1 5 1282 331 306 45 100 chr3 91476056 91476256 -68123527 - RMER12B LTR ERVK -131 1273 1085 5 1282 638 254 124 13 chr3 91476362 91476553 -68123230 + L1_Mur1 LINE L1 1450 1656 -4230 5 1282 383 83 17 0 chr3 91476553 91476613 -68123170 + (TAA)n Simple_repeat Simple_repeat 1 61 0 5 1282 638 254 124 13 chr3 91476613 91476728 -68123055 + L1_Mur1 LINE L1 1657 1790 -4096 5 1282 880 328 31 33 chr3 91476728 91477088 -68122695 + RLTR11A LTR ERVK 170 528 0 5 1282 270 386 24 48 chr3 91479104 91479270 -68120513 - B3A SINE B2 -35 163 2 5 1282 718 239 112 19 chr3 91481841 91482101 -68117682 + RMER20B LTR ERVK 130 413 -214 5 1282 381 349 70 10 chr3 91483135 91483335 -68116448 + MTE2a LTR MaLR 153 364 -15 5 1282 1113 292 28 31 chr3 91485204 91485561 -68114222 - RLTR11A LTR ERVK -3 525 170 5 1282 581 288 10 129 chr3 91485561 91485948 -68113835 - MusHAL1 LINE L1 -2124 588 248 5 1282 255 300 51 108 chr3 91486099 91486256 -68113527 + RMER12B LTR ERVK 1126 1273 -131 5 1282 981 110 7 14 chr3 91486374 91486521 -68113262 + B1_Mus2 SINE Alu 1 146 -1 5 1282 281 81 48 16 chr3 91486521 91486584 -68113199 + (CAAA)n Simple_repeat Simple_repeat 1 65 0 5 160 19752 96 4 0 chr3 91486823 91490761 -68109022 + L1Md_F2 LINE L1 100 4052 -1831 5 1283 2991 68 0 0 chr3 91490765 91491147 -68108636 + L1Md_F2 LINE L1 5205 5586 -297 5 1283 7645 68 2 3 chr3 91491147 91492140 -68107643 + L1Md_F2 LINE L1 5587 6578 -4 5 1283 18752 159 11 23 chr3 91492148 91495823 -68103960 + L1Md_F LINE L1 1198 4827 -1056 5 1283 6894 75 0 114 chr3 91495818 91497007 -68102776 + L1_Mm LINE L1 3776 4828 -1055 5 1283 1065 296 31 28 chr3 91497701 91498059 -68101724 - RLTR11A LTR ERVK 0 528 170 5 1283 228 86 0 0 chr3 91498128 91498163 -68101620 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 5 1283 389 305 87 31 chr3 91498972 91499168 -68100615 - MTE2a LTR MaLR -20 359 153 5 1283 501 275 121 25 chr3 91500148 91500387 -68099396 - RMER20B LTR ERVK -216 411 150 1 1283 522 67 0 0 chr3 91504520 91504595 -68095188 + (CA)n Simple_repeat Simple_repeat 2 76 0 2 1283 282 115 0 0 chr3 91504595 91504647 -68095136 + (GA)n Simple_repeat Simple_repeat 1 52 0 3 1283 207 0 0 0 chr3 91505814 91505837 -68093946 + (A)n Simple_repeat Simple_repeat 1 23 0 4 1283 35539 45 0 3 chr3 91505893 91511177 -68088606 + L1Md_T LINE L1 226 5589 -297 5 1283 8374 35 0 0 chr3 91511177 91512173 -68087610 + L1Md_T LINE L1 5590 6585 0 5 1283 267 31 0 0 chr3 91512409 91512441 -68087342 + (A)n Simple_repeat Simple_repeat 1 32 0 6 1283 339 292 122 7 chr3 91512768 91512916 -68086867 - HAL1-3A_ME LINE L1 -409 2449 2285 7 1283 189 74 0 0 chr3 91512997 91513024 -68086759 + (T)n Simple_repeat Simple_repeat 1 27 0 8 1283 588 310 32 5 chr3 91514135 91514320 -68085463 - B3 SINE B2 0 216 27 9 1283 641 299 60 20 chr3 91514378 91514627 -68085156 - Lx5 LINE L1 0 7050 6792 1 1283 248 261 11 0 chr3 91514638 91514730 -68085053 - L1_Mur2 LINE L1 -2003 3874 3782 1 1283 1230 187 7 15 chr3 91514736 91515007 -68084776 - L1_Mur2 LINE L1 -3202 2675 2407 1 1283 352 261 162 7 chr3 91515008 91515162 -68084621 - L1_Mur2 LINE L1 -6527 559 382 1 1283 22 57 0 19 chr3 91515264 91515283 -68084500 + AT_rich Low_complexity Low_complexity 1 19 0 1 1283 829 176 18 0 chr3 91515283 91515448 -68084335 + L1_Mus1 LINE L1 6400 6567 0 1 1283 22 57 0 19 chr3 91515448 91515482 -68084301 + AT_rich Low_complexity Low_complexity 1 34 0 1 1283 263 337 94 61 chr3 91516074 91516286 -68083497 - RMER12 LTR ERVK -105 1217 999 1 1283 662 301 18 9 chr3 91516320 91516541 -68083242 - MERVK26-int LTR ERVK -6631 288 66 1 1283 360 316 38 67 chr3 91516734 91516944 -68082839 - RLTR26 LTR ERVK -232 410 207 1 1283 917 98 0 36 chr3 91517103 91517241 -68082542 - B1_Mus1 SINE Alu 0 148 16 1 1283 507 262 66 35 chr3 91517117 91517315 -68082468 - ID_B1 SINE B4 -9 215 12 1 1283 2649 222 7 3 chr3 91517316 91517898 -68081885 + L1Md_T LINE L1 503 1086 -5638 2 1283 4453 144 32 36 chr3 91517894 91518781 -68081002 + L1Md_F LINE L1 226 1108 -5411 2 1283 36104 34 0 0 chr3 91518787 91523203 -68076580 + L1Md_T LINE L1 1170 5586 -297 2 1283 7969 57 0 0 chr3 91523203 91524198 -68075585 + L1Md_T LINE L1 5587 6581 -1 2 1283 32083 95 4 1 chr3 91524198 91529685 -68070098 + L1Md_F2 LINE L1 1049 6553 -29 2 1283 344 303 76 0 chr3 91529688 91529820 -68069963 + RLTR11A LTR ERVK 384 525 -3 2 1283 342 325 83 24 chr3 91531684 91531889 -68067894 - MTE2a LTR MaLR -10 369 153 2 1283 382 342 30 48 chr3 91532416 91532582 -68067201 - B3A SINE B2 -35 163 1 2 1283 590 269 119 27 chr3 91532926 91533186 -68066597 - RMER20B LTR ERVK -214 413 130 2 1283 333 0 0 0 chr3 91533487 91533524 -68066259 + (TA)n Simple_repeat Simple_repeat 1 37 0 2 1283 25911 148 13 30 chr3 91535573 91541499 -68058284 + L1_Mus1 LINE L1 751 6566 -1 2 1283 513 47 0 0 chr3 91543405 91543469 -68056314 + (CA)n Simple_repeat Simple_repeat 2 65 0 2 1283 223 182 0 0 chr3 91543980 91544024 -68055759 + A-rich Low_complexity Low_complexity 1 44 0 3 1283 870 139 23 6 chr3 91544936 91545109 -68054674 + C-rich Low_complexity Low_complexity 2 177 0 3 1283 274 314 16 16 chr3 91545128 91545254 -68054529 + CT-rich Low_complexity Low_complexity 1 126 0 3 1283 21 57 0 0 chr3 91545836 91545871 -68053912 + AT_rich Low_complexity Low_complexity 1 35 0 3 1283 659 330 30 0 chr3 91546358 91546561 -68053222 - B3 SINE B2 0 216 8 3 1283 653 284 54 19 chr3 91546602 91546861 -68052922 - Lx5 LINE L1 0 7050 6783 3 1283 5057 229 26 8 chr3 91546862 91547569 -68052214 - L1_Mur2 LINE L1 -2003 3874 3163 3 1283 237 33 0 0 chr3 91547569 91547599 -68052184 + (TTTTG)n Simple_repeat Simple_repeat 4 33 0 3 1283 5057 229 26 8 chr3 91547599 91548319 -68051464 - L1_Mur2 LINE L1 -2715 3162 2424 3 1283 368 238 76 3 chr3 91548341 91548497 -68051286 - L1_Mur2 LINE L1 -6481 605 375 3 1283 729 256 8 65 chr3 91549516 91549914 -68049869 + L1_Mur1 LINE L1 1443 1790 -4096 3 1283 1086 283 36 31 chr3 91549914 91550271 -68049512 + RLTR11A LTR ERVK 170 528 0 3 1283 452 237 162 29 chr3 91551543 91551747 -68048036 + RMER20B LTR ERVK 183 413 -214 4 1283 21 36 0 0 chr3 91552068 91552096 -68047687 + AT_rich Low_complexity Low_complexity 1 28 0 4 1283 1173 284 30 36 chr3 91553699 91554060 -68045723 - RLTR11A LTR ERVK 0 528 170 4 1283 604 260 8 127 chr3 91554060 91554447 -68045336 - L1_Mur1 LINE L1 -4096 1790 1450 4 1283 251 301 29 102 chr3 91554592 91554729 -68045054 + RMER12B LTR ERVK 1122 1248 -156 4 1283 1105 89 7 0 chr3 91554872 91555018 -68044765 + B1_Mus2 SINE Alu 1 147 0 4 1283 318 51 85 0 chr3 91555027 91555086 -68044697 + (CAAAA)n Simple_repeat Simple_repeat 3 66 0 4 1283 302 319 56 71 chr3 91555210 91555406 -68044377 + RLTR26 LTR ERVK 207 399 -243 4 1283 241 352 93 54 chr3 91555869 91556073 -68043710 + RMER12 LTR ERVK 1004 1215 -107 4 1283 933 124 25 0 chr3 91556699 91556860 -68042923 - L1Md_A LINE L1 -12 6570 6406 4 1283 448 261 141 12 chr3 91556976 91557139 -68042644 + L1_Mur2 LINE L1 530 713 -6373 5 1283 2479 218 24 10 chr3 91557144 91557820 -68041963 + L1_Mur2 LINE L1 2411 3095 -2782 5 1283 521 111 0 0 chr3 91557818 91557899 -68041884 - L1Md_F2 LINE L1 -618 5265 5185 5 1283 2115 121 29 14 chr3 91557877 91558221 -68041562 + L1Md_F2 LINE L1 5237 5585 -298 5 1283 6887 102 6 12 chr3 91558222 91559224 -68040559 + L1Md_F2 LINE L1 5587 6582 0 5 1283 399 133 24 12 chr3 91559262 91559346 -68040437 + L1VL4 LINE L1 748 832 -5470 5 1283 30527 90 11 8 chr3 91559342 91564778 -68035005 + L1Md_F2 LINE L1 130 5585 -298 5 1283 7809 59 2 0 chr3 91564779 91565773 -68034010 + L1Md_F2 LINE L1 5587 6582 0 5 1283 961 150 143 14 chr3 91566024 91566240 -68033543 + RMER6A LTR ERVK 311 554 -202 5 1283 243 338 96 73 chr3 91566799 91567019 -68032764 + RMER12 LTR ERVK 999 1223 -99 5 1283 32325 87 4 2 chr3 91567032 91572262 -68027521 + L1Md_F3 LINE L1 386 5586 -297 5 1283 7770 47 13 12 chr3 91572262 91573259 -68026524 + L1Md_F3 LINE L1 5587 6584 0 5 1283 346 250 164 0 chr3 91573991 91574107 -68025676 + L1_Mur2 LINE L1 530 664 -6422 5 1283 5378 218 19 14 chr3 91574159 91574888 -68024895 + L1_Mur2 LINE L1 2411 3151 -2726 5 1283 247 25 50 0 chr3 91574888 91574928 -68024855 + (CAAAA)n Simple_repeat Simple_repeat 4 45 0 5 1283 5378 218 19 14 chr3 91574928 91575641 -68024142 + L1_Mur2 LINE L1 3152 3861 -2016 5 1283 677 301 46 12 chr3 91575654 91575913 -68023870 + Lx5 LINE L1 6783 7050 0 5 1283 541 341 39 0 chr3 91575949 91576154 -68023629 + B3 SINE B2 4 216 0 6 1283 21 57 0 0 chr3 91576637 91576672 -68023111 + AT_rich Low_complexity Low_complexity 1 35 0 6 1283 411 265 14 24 chr3 91577253 91577550 -68022233 + GA-rich Low_complexity Low_complexity 1 293 0 6 1283 507 13 40 13 chr3 91577826 91577902 -68021881 + (TTTTG)n Simple_repeat Simple_repeat 2 79 0 6 1283 227 307 120 91 chr3 91578985 91579045 -68020738 - B3 SINE B2 -2 214 162 6 1283 711 101 0 0 chr3 91579045 91579164 -68020619 + (TC)n Simple_repeat Simple_repeat 2 120 0 6 1283 1173 78 0 0 chr3 91579169 91579348 -68020435 + (TG)n Simple_repeat Simple_repeat 2 180 0 6 1283 227 307 120 91 chr3 91579348 91579489 -68020294 - B3 SINE B2 -59 157 2 6 1283 434 241 149 29 chr3 91583545 91583720 -68016063 + RMER20B LTR ERVK 216 411 -216 6 1283 405 0 0 0 chr3 91583991 91584036 -68015747 + (TA)n Simple_repeat Simple_repeat 1 45 0 6 1283 244 265 39 58 chr3 91584117 91584221 -68015562 + B2_Mm2 SINE B2 1 102 -93 6 1283 471 289 87 31 chr3 91584727 91584923 -68014860 + MTE2a LTR MaLR 153 359 -20 7 1283 195 114 0 0 chr3 91585731 91585766 -68014017 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 7 1283 1043 302 31 31 chr3 91585835 91586194 -68013589 + RLTR11A LTR ERVK 170 528 0 7 1283 6850 75 2 114 chr3 91586891 91588075 -68011708 - L1_Mm LINE L1 -1056 4827 3776 7 1283 18798 158 13 19 chr3 91588070 91591723 -68008060 - L1Md_F LINE L1 -1056 4827 1198 7 1283 7744 60 1 0 chr3 91591731 91593105 -68006678 - L1Md_F2 LINE L1 -1 6581 5205 7 1283 19624 97 4 1 chr3 91593109 91597051 -68002732 - L1Md_F2 LINE L1 -1831 4052 100 7 1283 242 85 33 33 chr3 91597291 91597352 -68002431 + (TTTG)n Simple_repeat Simple_repeat 1 61 0 7 1283 956 117 7 14 chr3 91597352 91597499 -68002284 - B1_Mus2 SINE Alu -1 146 1 7 1283 301 312 25 83 chr3 91597617 91597774 -68002009 - RMER12B LTR ERVK -131 1273 1126 7 1283 593 288 10 129 chr3 91597925 91598312 -68001471 + MusHAL1 LINE L1 248 588 -2124 7 1283 1151 282 31 33 chr3 91598312 91598672 -68001111 + RLTR11A LTR ERVK 170 528 0 8 1283 405 352 65 10 chr3 91600540 91600741 -67999042 - MTE2a LTR MaLR -15 364 153 8 1283 317 400 12 36 chr3 91601297 91601463 -67998320 + B3A SINE B2 2 163 -35 8 1283 963 315 28 31 chr3 91603436 91603796 -67995987 - RLTR11A LTR ERVK 0 528 170 8 1283 504 252 51 118 chr3 91603806 91604161 -67995622 - L1_Mur1 LINE L1 -4106 1780 1450 8 1283 308 311 45 104 chr3 91604267 91604468 -67995315 + RMER12B LTR ERVK 1085 1273 -131 8 1283 1084 89 7 0 chr3 91604585 91604731 -67995052 + B1_Mus2 SINE Alu 1 147 0 8 1283 309 100 0 0 chr3 91604731 91604781 -67995002 + (A)n Simple_repeat Simple_repeat 1 50 0 8 1283 913 135 18 6 chr3 91604812 91604976 -67994807 - L1Md_A LINE L1 -11 6571 6406 8 1283 486 259 151 24 chr3 91605089 91605255 -67994528 + L1_Mur2 LINE L1 527 713 -6373 8 1283 2281 228 28 12 chr3 91605260 91605938 -67993845 + L1_Mur2 LINE L1 2411 3099 -2778 8 1283 485 93 80 0 chr3 91605931 91606006 -67993777 - L1_Mus1 LINE L1 -618 5265 5185 9 1283 6436 129 4 1 chr3 91606001 91607317 -67992466 + L1_Mus1 LINE L1 5249 6567 0 9 1283 204 67 0 0 chr3 91609213 91609243 -67990540 + (CA)n Simple_repeat Simple_repeat 2 31 0 9 1283 22 35 0 0 chr3 91609284 91609313 -67990470 + AT_rich Low_complexity Low_complexity 1 29 0 9 1283 480 18 0 0 chr3 91609769 91609826 -67989957 + (CA)n Simple_repeat Simple_repeat 2 58 0 9 1283 252 301 39 62 chr3 91610608 91610753 -67989030 + RMER17D LTR ERVK 145 284 -605 9 1283 1398 56 0 0 chr3 91610753 91610933 -67988850 + (TCTCCC)n Simple_repeat Simple_repeat 1 180 0 9 1283 252 301 39 62 chr3 91610933 91611124 -67988659 + RMER17D LTR ERVK 285 473 -416 9 1283 257 271 28 103 chr3 91612369 91612476 -67987307 - B2_Mm2 SINE B2 -70 125 27 9 1283 773 274 14 23 chr3 91612504 91612724 -67987059 - Lx5 LINE L1 -50 7000 6783 9 1283 5953 209 11 44 chr3 91612737 91614331 -67985452 - L1_Mur2 LINE L1 -2016 3861 2320 9 1283 278 188 88 59 chr3 91614304 91614440 -67985343 - L1_Mur2 LINE L1 -4402 1475 1336 9 160 33054 81 6 1 chr3 91614422 91619698 -67980085 - L1Md_F2 LINE L1 0 6582 1278 9 1284 873 232 90 10 chr3 91620175 91620377 -67979406 + L1_Mur1 LINE L1 1457 1664 -4222 1 1284 332 43 22 0 chr3 91620377 91620423 -67979360 + (TAA)n Simple_repeat Simple_repeat 3 49 0 1 1284 873 232 90 10 chr3 91620423 91620520 -67979263 + L1_Mur1 LINE L1 1665 1779 -4107 1 1284 1037 301 28 31 chr3 91620534 91620894 -67978889 + RLTR11A LTR ERVK 170 528 0 1 1284 11675 90 4 1 chr3 91621595 91623257 -67976526 - L1Md_F2 LINE L1 -1055 4828 3162 1 1284 4907 91 1 1 chr3 91623255 91623938 -67975845 + L1Md_F2 LINE L1 4904 5586 -297 1 1284 7010 96 2 7 chr3 91623938 91624939 -67974844 + L1Md_F2 LINE L1 5587 6582 0 1 1284 1095 138 27 0 chr3 91625293 91625481 -67974302 + B2_Mm2 SINE B2 1 193 -2 1 1284 231 120 19 39 chr3 91625484 91625536 -67974247 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 1 1284 401 320 66 20 chr3 91626345 91626543 -67973240 - MTE2a LTR MaLR -20 359 153 1 1284 224 266 40 60 chr3 91627038 91627138 -67972645 - B2_Mm2 SINE B2 -93 102 5 1 1284 612 243 116 55 chr3 91627470 91627762 -67972021 - RMER20B LTR ERVK -186 441 132 1 1284 2506 93 0 3 chr3 91628433 91628766 -67971017 - IAPEY3_LTR LTR ERVK 0 332 1 1 1284 2585 120 10 3 chr3 91628766 91629151 -67970632 - IAPEy-int LTR ERVK 0 7513 7126 1 1284 584 152 55 9 chr3 91629151 91629261 -67970522 - IAPEY_LTR LTR ERVK -236 149 1 1 1284 217 321 122 88 chr3 91632475 91632624 -67967159 + B3 SINE B2 1 161 -55 1 1284 189 0 0 0 chr3 91632624 91632645 -67967138 + (CA)n Simple_repeat Simple_repeat 2 22 0 1 1284 789 21 0 0 chr3 91632645 91632739 -67967044 + (GA)n Simple_repeat Simple_repeat 2 96 0 1 1284 217 321 122 88 chr3 91632739 91632793 -67966990 + B3 SINE B2 162 211 -5 1 1284 304 247 32 29 chr3 91634183 91634430 -67965353 + CT-rich Low_complexity Low_complexity 1 247 0 1 1284 610 304 32 5 chr3 91635540 91635725 -67964058 - B3 SINE B2 0 216 27 1 1284 615 301 60 20 chr3 91635784 91636032 -67963751 - Lx5 LINE L1 0 7050 6793 1 1284 5232 208 20 39 chr3 91636073 91637538 -67962245 - L1_Mur2 LINE L1 -2033 3844 2408 1 1284 337 323 142 6 chr3 91637540 91637702 -67962081 - L1_Mur2 LINE L1 -6373 713 530 1 1284 777 184 0 40 chr3 91637817 91637992 -67961791 + L1_Mus1 LINE L1 6400 6567 0 1 1284 7155 82 5 1 chr3 91638032 91638994 -67960789 + L1Md_F2 LINE L1 5588 6553 -29 1 1284 369 299 75 0 chr3 91638997 91639131 -67960652 + RLTR11A LTR ERVK 384 527 -1 1 1284 275 349 94 6 chr3 91640996 91641166 -67958617 - MTE2b LTR MaLR -10 369 185 1 1284 295 379 27 41 chr3 91641712 91641858 -67957925 - B3A SINE B2 -35 163 20 1 1284 692 239 127 13 chr3 91642257 91642494 -67957289 - RMER20B LTR ERVK -234 393 130 1 1284 7307 162 20 34 chr3 91644894 91646765 -67953018 + MusHAL1 LINE L1 633 2555 -3331 1 1284 17890 151 14 16 chr3 91646763 91650108 -67949675 + L1_Mm LINE L1 1504 4840 -1043 1 1284 6852 67 1 133 chr3 91650099 91651308 -67948475 + MusHAL1 LINE L1 3783 4831 -1055 1 1284 1071 303 25 25 chr3 91652002 91652361 -67947422 - RLTR11A LTR ERVK 0 528 170 1 1284 249 98 0 0 chr3 91652424 91652465 -67947318 + (CAAA)n Simple_repeat Simple_repeat 4 44 0 1 1284 318 309 96 46 chr3 91653271 91653468 -67946315 - MTE2a LTR MaLR -20 359 153 1 1284 245 265 39 58 chr3 91653972 91654076 -67945707 - B2_Mm2 SINE B2 -93 102 1 1 1284 408 20 0 0 chr3 91657036 91657085 -67942698 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 1284 319 36 35 35 chr3 91657086 91657143 -67942640 + (CAGAGA)n Simple_repeat Simple_repeat 2 58 0 1 1284 369 291 114 7 chr3 91658604 91658753 -67941030 - HAL1-3A_ME LINE L1 -409 2449 2285 1 1284 211 320 0 49 chr3 91658753 91658855 -67940928 + CT-rich Low_complexity Low_complexity 5 101 0 1 1284 181 222 0 82 chr3 91659906 91659955 -67939828 - L2a LINE L2 -36 3390 3346 1 1284 240 254 101 101 chr3 91660010 91660168 -67939615 - RLTR26 LTR ERVK -232 410 253 1 1284 40006 19 1 6 chr3 91660545 91666723 -67933060 - L1Md_A LINE L1 0 6582 442 1 1284 580 276 129 27 chr3 91667419 91667717 -67932066 + RMER20B LTR ERVK 97 413 -214 1 1284 324 357 17 25 chr3 91668077 91668195 -67931588 + B3A SINE B2 2 118 -80 1 1284 989 301 39 34 chr3 91670200 91670557 -67929226 - RLTR11A LTR ERVK 0 528 170 1 1284 469 251 49 115 chr3 91670557 91670904 -67928879 - L1_Mur1 LINE L1 -4096 1790 1467 1 1284 300 289 49 66 chr3 91671066 91671188 -67928595 + RMER12B LTR ERVK 1122 1241 -163 1 1284 883 86 0 0 chr3 91671343 91671459 -67928324 + B1_Mus1 SINE Alu 33 148 0 1 1284 189 25 125 0 chr3 91671464 91671504 -67928279 + (CAAAA)n Simple_repeat Simple_repeat 2 46 0 1 1284 936 117 18 12 chr3 91671527 91671692 -67928091 - L1Md_F2 LINE L1 -10 6572 6407 1 1284 410 248 158 24 chr3 91671805 91671970 -67927813 + L1_Mur2 LINE L1 527 713 -6373 1 1284 2047 227 42 9 chr3 91671975 91672638 -67927145 + L1_Mur2 LINE L1 2411 3095 -2782 1 1284 569 86 0 0 chr3 91672636 91672717 -67927066 - L1_Mm LINE L1 -618 5265 5185 1 1284 2081 130 0 0 chr3 91672712 91673043 -67926740 + L1_Mm LINE L1 5249 5579 -304 1 1284 6124 128 3 2 chr3 91673042 91674685 -67925098 + L1_Mus1 LINE L1 4923 6567 0 1 1284 204 67 0 0 chr3 91676582 91676612 -67923171 + (CA)n Simple_repeat Simple_repeat 2 31 0 1 1284 260 27 0 26 chr3 91677130 91677168 -67922615 + (CAAAA)n Simple_repeat Simple_repeat 2 38 0 1 1284 477 0 0 0 chr3 91677169 91677222 -67922561 + (CA)n Simple_repeat Simple_repeat 2 54 0 1 1284 1437 40 0 0 chr3 91678141 91678317 -67921466 + (TCTCCC)n Simple_repeat Simple_repeat 5 180 0 1 1284 511 266 16 4 chr3 91678334 91678583 -67921200 + CT-rich Low_complexity Low_complexity 1 252 0 1 1284 254 281 28 103 chr3 91679706 91679813 -67919970 - B2_Mm2 SINE B2 -70 125 27 1 1284 730 305 23 4 chr3 91679872 91680135 -67919648 - Lx5 LINE L1 0 7050 6783 1 1284 5754 211 11 19 chr3 91680148 91680862 -67918921 - L1_Mur2 LINE L1 -2016 3861 3154 1 1284 250 67 44 0 chr3 91680862 91680907 -67918876 + (TTG)n Simple_repeat Simple_repeat 2 48 0 1 1284 5754 211 11 19 chr3 91680907 91681746 -67918037 - L1_Mur2 LINE L1 -2724 3153 2320 1 1284 21 36 0 0 chr3 91681755 91681783 -67918000 + AT_rich Low_complexity Low_complexity 1 28 0 1 1284 20514 78 0 1 chr3 91681843 91685476 -67914307 - L1Md_F2 LINE L1 0 6585 2956 1 1284 36865 6 0 0 chr3 91685477 91691057 -67908726 + L1Md_A LINE L1 7 5586 -297 1 1284 9093 1 0 0 chr3 91691057 91692053 -67907730 + L1Md_A LINE L1 5587 6582 0 1 1284 297 0 0 0 chr3 91692061 91692094 -67907689 + (A)n Simple_repeat Simple_repeat 1 33 0 1 1284 11741 85 4 13 chr3 91692094 91694588 -67905195 - L1Md_F2 LINE L1 -2919 2967 400 1 1284 2210 219 48 64 chr3 91694593 91695448 -67904335 - L1_Mur2 LINE L1 -4510 1367 530 1 1284 318 325 101 13 chr3 91696199 91696358 -67903425 - RMER12 LTR ERVK -146 1176 1004 1 1284 746 252 28 53 chr3 91696385 91696632 -67903151 - MERVK26-int LTR ERVK -6625 294 54 1 1284 474 316 78 62 chr3 91696804 91697177 -67902606 - RLTR26 LTR ERVK -233 409 3 1 1284 293 282 115 94 chr3 91697256 91697448 -67902335 - RMER12B LTR ERVK -131 1273 1078 1 1284 686 244 10 0 chr3 91697582 91697791 -67901992 + MusHAL1 LINE L1 262 472 -2240 1 1284 297 183 0 0 chr3 91697791 91697851 -67901932 + (ATG)n Simple_repeat Simple_repeat 1 60 0 1 1284 1005 309 25 25 chr3 91697960 91698319 -67901464 + RLTR11A LTR ERVK 170 528 0 1 1284 5300 73 0 0 chr3 91699022 91699784 -67899999 - L1_Mm LINE L1 -3877 2006 1245 1 1284 12650 21 0 0 chr3 91699781 91701318 -67898465 + L1Md_T LINE L1 4049 5585 -298 1 1284 8298 42 0 0 chr3 91701319 91702315 -67897468 + L1Md_T LINE L1 5587 6582 0 1 1284 18291 94 3 3 chr3 91702334 91705221 -67894562 - L1Md_F2 LINE L1 -529 6053 3166 1 1284 932 144 18 6 chr3 91705208 91705376 -67894407 + L1Md_F2 LINE L1 4890 5059 -824 1 1284 320 68 0 0 chr3 91705373 91705417 -67894366 + L1Md_F2 LINE L1 5543 5586 -297 1 1284 7145 89 3 10 chr3 91705417 91706420 -67893363 + L1Md_F2 LINE L1 5587 6582 0 1 1284 1261 89 26 21 chr3 91706772 91706966 -67892817 + B2_Mm2 SINE B2 1 195 0 1 1284 391 307 87 27 chr3 91707797 91707981 -67891802 - MTE2a LTR MaLR -20 359 165 1 1284 213 276 39 58 chr3 91708485 91708589 -67891194 - B2_Mm2 SINE B2 -93 102 1 1 1284 330 87 0 0 chr3 91708670 91708716 -67891067 + (TA)n Simple_repeat Simple_repeat 1 46 0 1 1284 676 249 106 55 chr3 91708952 91709245 -67890538 - RMER20B LTR ERVK -186 441 134 1 1284 438 114 0 0 chr3 91713357 91713436 -67886347 + (CA)n Simple_repeat Simple_repeat 2 80 0 1 1284 483 33 0 0 chr3 91713436 91713496 -67886287 + (GA)n Simple_repeat Simple_repeat 2 62 0 1 1284 21 71 0 0 chr3 91713538 91713580 -67886203 + AT_rich Low_complexity Low_complexity 1 42 0 1 1284 314 312 80 46 chr3 91714957 91715108 -67884675 - HAL1-3A_ME LINE L1 -419 2439 2284 1 1284 770 304 4 34 chr3 91716471 91716740 -67883043 - RLTR11A LTR ERVK -98 430 170 1 1284 724 267 8 90 chr3 91716740 91717119 -67882664 - L1_Mur1 LINE L1 -4096 1790 1443 1 1284 207 378 7 7 chr3 91717469 91717605 -67882178 + GA-rich Low_complexity Low_complexity 1 136 0 1 1284 1273 19 25 0 chr3 91717612 91717774 -67882009 + (GGGAGA)n Simple_repeat Simple_repeat 4 169 0 1 1284 308 323 78 30 chr3 91719179 91719239 -67880544 - B3 SINE B2 -4 212 156 1 1284 537 55 0 0 chr3 91719239 91719312 -67880471 + (TG)n Simple_repeat Simple_repeat 2 74 0 1 1284 308 323 78 30 chr3 91719312 91719417 -67880366 - B3 SINE B2 -61 155 39 1 1284 25664 144 20 29 chr3 91721210 91726913 -67872870 - L1_Mus1 LINE L1 0 6567 915 1 1284 272 27 27 0 chr3 91726913 91726950 -67872833 + (TTTG)n Simple_repeat Simple_repeat 3 40 0 1 1284 1794 198 39 134 chr3 91726950 91727154 -67872629 - L1_Mus1 LINE L1 -5743 914 726 1 1284 216 111 0 0 chr3 91727635 91727671 -67872112 + (TA)n Simple_repeat Simple_repeat 1 36 0 1 1284 32928 85 12 2 chr3 91727672 91733877 -67865906 - L1Md_F2 LINE L1 -14 6568 301 1 1284 692 181 8 0 chr3 91733875 91734002 -67865781 - L1Md_F LINE L1 -5986 533 406 1 1284 267 324 38 112 chr3 91734069 91734229 -67865554 - RMER12B LTR ERVK -131 1273 1126 1 1284 699 274 3 128 chr3 91734380 91734770 -67865013 + MusHAL1 LINE L1 248 588 -2124 1 1284 1072 288 33 36 chr3 91734770 91735130 -67864653 + RLTR11A LTR ERVK 170 528 0 1 1284 1485 23 0 0 chr3 91737372 91737549 -67862234 + (TCTCCC)n Simple_repeat Simple_repeat 4 180 0 1 1284 360 328 7 7 chr3 91737556 91737691 -67862092 + CT-rich Low_complexity Low_complexity 2 136 0 1 1284 540 308 40 11 chr3 91738786 91738960 -67860823 - B3 SINE B2 0 216 38 1 1284 786 279 47 27 chr3 91739029 91739287 -67860496 - Lx5 LINE L1 0 7050 6788 1 1284 5933 206 20 43 chr3 91739305 91740878 -67858905 - L1_Mur2 LINE L1 -2016 3861 2325 1 1284 2817 221 39 12 chr3 91740869 91741769 -67858014 - L1_Mur2 LINE L1 -4421 1456 530 1 1284 248 36 51 51 chr3 91742249 91742308 -67857475 + (TTTTG)n Simple_repeat Simple_repeat 2 60 0 2 1284 258 341 37 22 chr3 91742588 91742723 -67857060 - RMER12 LTR ERVK -146 1176 1040 2 1284 858 264 16 40 chr3 91742783 91743032 -67856751 - MERVK26-int LTR ERVK -6631 288 46 2 1284 650 289 62 59 chr3 91743197 91743487 -67856296 - RLTR26 LTR ERVK -232 410 120 2 1284 844 217 18 82 chr3 91743956 91744317 -67855466 + L1_Mur3 LINE L1 1453 1780 -4106 2 1284 1114 297 44 22 chr3 91744317 91744679 -67855104 + RLTR11A LTR ERVK 156 525 -3 2 1284 258 318 20 60 chr3 91745467 91745668 -67854115 - RMER12 LTR ERVK -1082 766 574 2 1284 1272 257 47 51 chr3 91745706 91746282 -67853501 - RMER12 LTR ERVK -1265 583 1 2 1284 1739 222 108 36 chr3 91747695 91748521 -67851262 + L1VL4 LINE L1 903 1780 -4106 2 1284 1296 265 50 25 chr3 91748521 91748885 -67850898 + RLTR11A LTR ERVK 156 528 0 2 1285 6809 191 19 8 chr3 91750615 91752135 -67847648 - L1_Mur2 LINE L1 -2016 3861 2325 2 1285 3631 158 29 29 chr3 91752112 91752311 -67847472 - L1_Mur2 LINE L1 -4401 1476 1271 2 1285 251 28 28 0 chr3 91752311 91752347 -67847436 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 2 1285 3631 199 34 14 chr3 91752347 91753073 -67846710 - L1_Mur2 LINE L1 -5816 1270 530 2 1285 31004 106 10 16 chr3 91753351 91758406 -67841377 + L1_Mus1 LINE L1 217 5234 -649 2 1285 189 0 0 0 chr3 91758406 91758427 -67841356 + (TA)n Simple_repeat Simple_repeat 1 21 0 2 1285 31004 99 6 9 chr3 91758427 91759140 -67840643 + L1_Mus1 LINE L1 5235 5956 -611 2 1285 3407 23 5 0 chr3 91759140 91759534 -67840249 + MTA_Mm LTR MaLR 1 396 0 2 1285 6979 93 2 13 chr3 91759534 91760154 -67839629 + L1_Mus1 LINE L1 5957 6567 0 2 1285 238 339 76 102 chr3 91760646 91760739 -67839044 - RMER12 LTR ERVK -143 1179 1087 2 1285 980 94 0 13 chr3 91760739 91760890 -67838893 + L1Md_F2 LINE L1 6422 6570 -12 2 1285 238 339 76 102 chr3 91760890 91760993 -67838790 - RMER12 LTR ERVK -236 1086 988 2 1285 477 0 0 0 chr3 91761029 91761082 -67838701 + (TTG)n Simple_repeat Simple_repeat 2 54 0 2 1285 955 238 13 40 chr3 91761086 91761314 -67838469 - MERVK26-int LTR ERVK -6644 275 54 2 1285 619 319 74 65 chr3 91761434 91761773 -67838010 - RLTR26 LTR ERVK -181 461 120 2 1285 394 238 153 91 chr3 91761944 91762120 -67837663 - RMER12B LTR ERVK -131 1273 1087 2 1285 378 0 0 0 chr3 91762272 91762314 -67837469 + (TTA)n Simple_repeat Simple_repeat 3 44 0 2 1285 334 236 22 0 chr3 91762440 91762529 -67837254 - RLTR22_Mus LTR ERVK -1227 581 491 2 1285 2728 94 20 12 chr3 91762584 91762984 -67836799 + RLTR9D LTR ERVK 1 403 0 2 1285 1108 248 61 45 chr3 91762986 91763362 -67836421 + MMETn-int LTR ERVK 3 384 -2930 2 1285 558 0 0 0 chr3 91763364 91763426 -67836357 + (TAAAA)n Simple_repeat Simple_repeat 4 65 0 2 1285 3613 178 81 81 chr3 91763427 91764466 -67835317 + MMETn-int LTR ERVK 293 1313 -3531 2 1285 3327 122 37 9 chr3 91764469 91765006 -67834777 + MMETn-int LTR ERVK 2494 3045 -4361 2 1285 3282 129 10 8 chr3 91765061 91765569 -67834214 + RLTR1D LTR ERV1 81 589 -16 2 1285 5873 144 35 8 chr3 91765583 91766662 -67833121 + ETnERV2-int LTR ERVK 1979 4075 -3331 2 1285 1457 42 0 54 chr3 91766662 91766821 -67832962 + B2_Mm1a SINE B2 2 160 -33 2 1285 207 0 0 0 chr3 91766821 91766844 -67832939 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 2 1285 1457 42 0 54 chr3 91766844 91766887 -67832896 + B2_Mm1a SINE B2 161 193 0 2 1285 4679 205 83 88 chr3 91766887 91768248 -67831535 + ETnERV2-int LTR ERVK 2063 3745 -1099 2 1285 457 95 27 13 chr3 91768458 91768533 -67831250 + ETnERV2-int LTR ERVK 7331 7406 0 2 1285 1701 107 306 10 chr3 91768533 91768844 -67830939 + RLTR9D LTR ERVK 1 403 0 2 1285 1181 253 14 36 chr3 91768923 91769273 -67830510 - RMER12 LTR ERVK -1507 341 1 2 1285 423 0 0 0 chr3 91769400 91769447 -67830336 + (TA)n Simple_repeat Simple_repeat 2 48 0 2 1285 2275 220 28 36 chr3 91770636 91771565 -67828218 + L1_Mur1 LINE L1 818 1771 -2141 2 1285 1238 270 28 48 chr3 91771595 91771953 -67827830 + RLTR11A LTR ERVK 175 525 -3 2 1285 702 318 85 17 chr3 91773943 91774264 -67825519 - MTE2b LTR MaLR -26 353 1 2 1285 365 295 59 52 chr3 91774581 91774717 -67825066 - B3A SINE B2 -13 185 49 2 1285 764 274 98 38 chr3 91775089 91775419 -67824364 - RMER20B LTR ERVK -191 436 98 2 1285 297 0 0 0 chr3 91775699 91775732 -67824051 + (CA)n Simple_repeat Simple_repeat 2 34 0 2 1285 184 358 32 0 chr3 91775951 91776046 -67823737 + MIRb SINE MIR 42 139 -129 2 1285 850 27 0 0 chr3 91776627 91776737 -67823046 + L1Md_F3 LINE L1 6458 6567 -17 2 1285 22 0 0 0 chr3 91776737 91776759 -67823024 + AT_rich Low_complexity Low_complexity 1 22 0 2 1285 349 315 126 6 chr3 91779547 91779676 -67820107 + B3 SINE B2 13 160 -56 2 1285 348 24 0 0 chr3 91779676 91779717 -67820066 + (CA)n Simple_repeat Simple_repeat 1 41 0 2 1285 349 315 126 6 chr3 91779717 91779769 -67820014 + B3 SINE B2 161 215 -1 2 1285 246 32 0 0 chr3 91780220 91780251 -67819532 + (CAAAAA)n Simple_repeat Simple_repeat 2 32 0 2 1285 438 20 0 0 chr3 91781037 91781088 -67818695 + (TC)n Simple_repeat Simple_repeat 2 52 0 2 1285 330 154 0 0 chr3 91781088 91781166 -67818617 + (TG)n Simple_repeat Simple_repeat 2 79 0 2 1285 180 217 0 0 chr3 91781201 91781247 -67818536 + CT-rich Low_complexity Low_complexity 3 48 0 2 1285 9128 162 12 6 chr3 91782325 91784087 -67815696 - L1_Mus4 LINE L1 -474 5409 3637 2 1285 4617 116 23 0 chr3 91784085 91784939 -67814844 + L1_Mus4 LINE L1 5390 6282 -354 2 1285 1783 240 17 5 chr3 91784977 91785391 -67814392 - Lx5 LINE L1 0 7050 6632 2 1285 5155 186 46 44 chr3 91785472 91786693 -67813090 + Lx3C LINE L1 5753 6975 -1 2 1285 431 284 128 21 chr3 91786694 91786928 -67812855 + L1M4 LINE L1 5304 5562 -622 2 1285 432 247 0 0 chr3 91786928 91787001 -67812782 - RLTR26 LTR ERVK -569 73 1 2 1285 26700 133 19 51 chr3 91787051 91790932 -67808851 + L1_Mus2 LINE L1 415 4228 -1655 2 1285 393 113 11 184 chr3 91790932 91791019 -67808764 + tRNA-Tyr-TAC tRNA tRNA 3 74 -2 2 1285 26700 106 9 39 chr3 91791019 91791038 -67808745 + L1_Mus2 LINE L1 4229 4246 -2320 2 1285 966 99 0 14 chr3 91791038 91791181 -67808602 + B1_Mus1 SINE Alu 8 148 0 2 1285 26700 106 9 39 chr3 91791181 91793412 -67806371 + L1_Mus2 LINE L1 4247 6442 -124 2 1285 3083 45 45 0 chr3 91793412 91793789 -67805994 - MTA_Mm LTR MaLR 0 396 3 2 1285 8235 65 9 3 chr3 91793791 91794882 -67804901 - MTA_Mm-int LTR MaLR 0 1098 1 2 1285 3019 45 56 0 chr3 91794882 91795257 -67804526 - MTA_Mm LTR MaLR 0 396 1 2 1285 6787 87 4 14 chr3 91795257 91795384 -67804399 + L1_Mus2 LINE L1 6443 6565 -1 2 1285 4507 220 50 8 chr3 91795462 91796808 -67802975 + L1_Mur3 LINE L1 4448 5880 0 2 1285 25 65 0 0 chr3 91796967 91797013 -67802770 + AT_rich Low_complexity Low_complexity 1 46 0 2 1285 519 95 0 0 chr3 91798264 91798338 -67801445 + (TTCC)n Simple_repeat Simple_repeat 3 76 0 2 1285 198 0 0 0 chr3 91798336 91798358 -67801425 + (TTTTA)n Simple_repeat Simple_repeat 3 24 0 2 1285 1910 184 27 14 chr3 91798471 91798841 -67800942 - ORR1C1 LTR MaLR -3 375 1 2 1285 427 277 50 8 chr3 91798923 91799043 -67800740 - MTE2b LTR MaLR -4 375 251 2 1285 570 246 183 50 chr3 91799088 91799328 -67800455 + RLTR10A LTR ERVK 140 411 0 2 1285 591 288 33 22 chr3 91799328 91799505 -67800278 - MTE2b LTR MaLR -117 262 84 2 1285 459 0 0 0 chr3 91799540 91799591 -67800192 + (GA)n Simple_repeat Simple_repeat 2 52 0 2 1285 3238 130 49 25 chr3 91801500 91802107 -67797676 - RMER17D2 LTR ERVK -187 622 1 2 1285 387 221 107 122 chr3 91802616 91802812 -67796971 - B3A SINE B2 -2 196 4 2 1285 200 364 39 0 chr3 91802990 91803067 -67796716 - MIR SINE MIR -55 153 74 2 1285 198 250 72 36 chr3 91803457 91803540 -67796243 + MIRc SINE MIR 41 126 -142 2 1285 700 227 200 5 chr3 91804052 91804247 -67795536 + MT2A LTR ERVL 301 533 0 2 1285 1216 222 4 4 chr3 91804252 91804505 -67795278 + RMER5 LTR ERV1 282 534 0 2 1285 324 0 0 0 chr3 91805232 91805268 -67794515 + (TTTTC)n Simple_repeat Simple_repeat 2 37 0 2 1285 547 299 30 27 chr3 91806270 91806569 -67793214 + L1_Mur3 LINE L1 1549 1848 -4032 2 1285 2123 210 42 43 chr3 91806779 91806950 -67792833 + RLTR22_Mur LTR ERVK 1 164 -1684 2 1285 231 36 0 0 chr3 91806950 91806978 -67792805 + (TG)n Simple_repeat Simple_repeat 1 28 0 2 1285 2123 210 42 43 chr3 91806978 91806991 -67792792 + RLTR22_Mur LTR ERVK 165 169 -1679 2 1285 555 16 0 0 chr3 91806991 91807055 -67792728 + (TA)n Simple_repeat Simple_repeat 2 65 0 2 1285 2123 210 42 43 chr3 91807055 91807446 -67792337 + RLTR22_Mur LTR ERVK 170 576 -1272 2 1285 3493 101 0 0 chr3 91807446 91807950 -67791833 - Lx3_Mus LINE L1 -189 6820 6317 2 1285 743 120 89 12 chr3 91807950 91808118 -67791665 + Lx3_Mus LINE L1 6824 7004 -5 2 1285 770 230 15 91 chr3 91808118 91808381 -67791402 + RLTR22_Mur LTR ERVK 571 813 -1035 2 1285 201 162 0 0 chr3 91808420 91808457 -67791326 + T-rich Low_complexity Low_complexity 1 37 0 2 1285 972 0 0 0 chr3 91808509 91808617 -67791166 + (GAA)n Simple_repeat Simple_repeat 1 108 0 2 1285 540 45 0 0 chr3 91808617 91808683 -67791100 + (TAA)n Simple_repeat Simple_repeat 2 68 0 2 1285 259 340 18 27 chr3 91808737 91808849 -67790934 + RMER12 LTR ERVK 1072 1182 -140 2 1285 225 0 0 0 chr3 91808849 91808874 -67790909 + (A)n Simple_repeat Simple_repeat 1 25 0 2 1285 430 295 16 0 chr3 91808913 91809035 -67790748 + RMER12 LTR ERVK 1195 1318 -4 2 1285 332 320 71 8 chr3 91809544 91809670 -67790113 + L1MC5 LINE L1 6691 6824 -1137 2 1285 837 109 29 0 chr3 91809680 91809817 -67789966 - URR1B DNA MER1_type -2 223 83 2 1285 19847 107 19 12 chr3 91809971 91813921 -67785862 - L1_Mus2 LINE L1 0 6566 2588 2 1285 658 56 37 0 chr3 91813921 91814028 -67785755 - L1Md_F3 LINE L1 0 6584 6474 2 1285 955 141 13 29 chr3 91814306 91814488 -67785295 - RLTR9E LTR ERVK -8 412 247 2 1285 455 259 53 9 chr3 91814488 91814601 -67785182 + ETnERV2-int LTR ERVK 7085 7202 -204 2 1285 1704 89 30 0 chr3 91814991 91815226 -67784557 - RLTR9E LTR ERVK -162 247 6 2 1285 459 0 0 0 chr3 91815883 91815934 -67783849 + (TTTTG)n Simple_repeat Simple_repeat 4 54 0 2 1285 336 24 0 0 chr3 91818083 91818124 -67781659 + (A)n Simple_repeat Simple_repeat 1 41 0 2 1285 961 303 57 48 chr3 91818903 91819274 -67780509 - MTEa LTR MaLR 0 379 6 2 1285 211 225 0 0 chr3 91819337 91819377 -67780406 + (CAT)n Simple_repeat Simple_repeat 3 42 0 2 1285 595 68 10 10 chr3 91819728 91819832 -67779951 - L1Md_F3 LINE L1 -14 6570 6467 2 1285 33100 50 30 1 chr3 91819832 91824907 -67774876 - L1Md_F3 LINE L1 -215 6369 1140 2 1285 3826 158 18 26 chr3 91824883 91824917 -67774866 - L1Md_F3 LINE L1 -5519 1205 1183 2 1285 261 0 0 0 chr3 91824917 91824946 -67774837 + (TTG)n Simple_repeat Simple_repeat 2 30 0 2 1285 3826 158 18 26 chr3 91824946 91825702 -67774081 - L1Md_F3 LINE L1 -5542 1182 422 2 1285 243 283 41 61 chr3 91825745 91825843 -67773940 - MIR3 SINE MIR -20 188 93 2 1285 1616 21 16 0 chr3 91827491 91827681 -67772102 + B2_Mm1a SINE B2 1 193 0 2 1285 276 30 0 0 chr3 91828955 91828988 -67770795 + (A)n Simple_repeat Simple_repeat 1 33 0 2 1285 427 281 37 7 chr3 91829105 91829241 -67770542 + B1F SINE Alu 1 140 -9 2 1285 228 282 26 97 chr3 91830018 91830132 -67769651 - LTR50 LTR ERVL -638 157 52 2 1285 1157 50 0 7 chr3 91830956 91831096 -67768687 + B1_Mus2 SINE Alu 3 141 -6 2 1285 291 28 0 0 chr3 91831098 91831134 -67768649 + (TAAAA)n Simple_repeat Simple_repeat 2 37 0 2 1285 594 28 0 0 chr3 91831165 91831237 -67768546 + (CA)n Simple_repeat Simple_repeat 2 73 0 2 1285 26 30 0 0 chr3 91831449 91831482 -67768301 + AT_rich Low_complexity Low_complexity 1 33 0 3 1285 666 133 8 32 chr3 91832707 91832831 -67766952 - Lx LINE L1 -7 6647 6527 3 1285 996 246 20 0 chr3 91833556 91833759 -67766024 - B3 SINE B2 -9 207 1 3 1285 366 80 0 0 chr3 91835853 91835903 -67763880 + (GA)n Simple_repeat Simple_repeat 1 50 0 3 1285 248 312 73 31 chr3 91836424 91836520 -67763263 + MLT1A1 LTR MaLR 1 100 -308 3 1285 252 130 0 0 chr3 91839111 91839157 -67760626 + (T)n Simple_repeat Simple_repeat 1 46 0 3 1285 915 142 0 13 chr3 91839159 91839309 -67760474 - B1_Mus1 SINE Alu 0 148 1 3 1285 1052 102 0 6 chr3 91839388 91839555 -67760228 + L1_Mus4 LINE L1 6470 6635 -1 3 1285 234 367 76 45 chr3 91839903 91840060 -67759723 - MIRb SINE MIR -42 226 65 3 1285 402 173 0 0 chr3 91840243 91840318 -67759465 + CT-rich Low_complexity Low_complexity 2 76 0 3 1285 193 241 93 0 chr3 91840476 91840530 -67759253 - L3 LINE CR1 -785 3704 3646 3 1285 204 254 59 15 chr3 91840657 91840725 -67759058 - MIRc SINE MIR -96 172 102 3 1285 458 280 0 0 chr3 91840788 91840881 -67758902 - ID_B1 SINE B4 -14 210 118 3 1285 246 269 90 0 chr3 91840827 91840894 -67758889 - 4.5SRNA scRNA scRNA -6 88 16 3 1285 21 0 0 0 chr3 91841104 91841125 -67758658 + AT_rich Low_complexity Low_complexity 1 21 0 3 1285 441 319 0 0 chr3 91841171 91841284 -67758499 - B3 SINE B2 -6 210 98 3 1285 685 335 64 0 chr3 91841525 91841761 -67758022 + B4A SINE B4 42 292 0 3 1285 480 320 69 31 chr3 91843165 91843614 -67756169 - L1MA10 LINE L1 0 6334 5869 3 1285 532 244 89 25 chr3 91843616 91843852 -67755931 + MER33 DNA MER1_type 26 276 -48 3 1285 219 80 0 74 chr3 91844066 91844120 -67755663 + A-rich Low_complexity Low_complexity 3 52 0 3 1285 1008 248 84 22 chr3 91844130 91844489 -67755294 - Lx7 LINE L1 -361 7335 6955 3 1285 2350 218 151 28 chr3 91844504 91845159 -67754624 - RMER19A LTR ERVK -1 736 1 3 1285 543 244 49 30 chr3 91845174 91845377 -67754406 - L1MC3 LINE L1 -211 7574 7368 3 1285 570 300 92 42 chr3 91845385 91845561 -67754222 - L1MC3 LINE L1 -1588 6407 6195 3 1285 725 267 50 20 chr3 91845561 91845760 -67754023 + B3 SINE B2 2 206 -10 3 1285 570 299 95 38 chr3 91845760 91845984 -67753799 - L1MC3 LINE L1 -1591 6194 5951 3 1285 405 102 0 0 chr3 91845984 91846043 -67753740 + (CAT)n Simple_repeat Simple_repeat 2 60 0 3 1285 570 299 95 38 chr3 91846043 91846114 -67753669 - L1MC3 LINE L1 -1835 5950 5876 3 1285 272 200 22 0 chr3 91846115 91846160 -67753623 - B3A SINE B2 -151 47 2 3 1285 539 307 52 34 chr3 91846164 91846491 -67753292 - L1MC3 LINE L1 -2051 5734 5402 3 1285 408 20 0 0 chr3 91846508 91846557 -67753226 + (TG)n Simple_repeat Simple_repeat 2 50 0 3 1285 2522 146 25 14 chr3 91846557 91847002 -67752781 + RLTR11B LTR ERVK 4 453 0 3 1285 301 262 0 19 chr3 91847083 91847188 -67752595 - Lx8 LINE L1 -1 7472 7370 3 1285 6060 87 7 26 chr3 91847199 91848074 -67751709 - L1_Mus3 LINE L1 0 6638 5781 3 1285 792 246 80 45 chr3 91848074 91848363 -67751420 - Lx8 LINE L1 -364 7109 6811 3 1285 870 297 77 114 chr3 91848393 91849494 -67750289 - L1MC3 LINE L1 -860 5286 4227 3 1285 385 316 79 12 chr3 91849964 91850191 -67749592 - B4A SINE B4 -10 282 6 3 1285 3039 66 0 0 chr3 91850530 91850922 -67748861 - L1_Mus1 LINE L1 0 6567 6176 3 1285 235 346 38 30 chr3 91851134 91851265 -67748518 + MIRb SINE MIR 119 250 -18 3 1285 21 0 0 0 chr3 91851437 91851458 -67748325 + AT_rich Low_complexity Low_complexity 1 21 0 3 1285 237 303 26 13 chr3 91851903 91851980 -67747803 + L2c LINE L2 3260 3337 -50 3 1285 939 234 67 106 chr3 91852673 91853165 -67746618 + RMER17C-int LTR ERVK 1 473 -2765 3 1285 219 143 54 0 chr3 91853165 91853221 -67746562 + T-rich Low_complexity Low_complexity 6 64 0 3 1285 999 95 29 0 chr3 91853223 91853360 -67746423 - B1_Mus1 SINE Alu -7 141 1 3 1285 606 241 142 35 chr3 91853362 91853616 -67746167 + RMER17C-int LTR ERVK 464 744 -2494 3 1285 1937 115 19 13 chr3 91854004 91854322 -67745461 + RMER17C-int LTR ERVK 1356 1675 -1563 3 1285 782 212 112 20 chr3 91854322 91854572 -67745211 + RMER17C LTR ERVK 110 382 -28 3 1285 501 17 0 0 chr3 91854573 91854631 -67745152 + (TC)n Simple_repeat Simple_repeat 2 59 0 3 1285 576 0 0 0 chr3 91854846 91854910 -67744873 + (TTTTG)n Simple_repeat Simple_repeat 3 66 0 3 1285 543 43 0 0 chr3 91856295 91856365 -67743418 + (CA)n Simple_repeat Simple_repeat 1 70 0 3 1285 24 53 0 0 chr3 91856379 91856417 -67743366 + AT_rich Low_complexity Low_complexity 1 38 0 3 1285 2415 182 10 12 chr3 91856885 91857578 -67742205 + L1VL4 LINE L1 445 1104 -2511 3 1285 372 43 0 0 chr3 91857578 91857624 -67742159 + (TAAA)n Simple_repeat Simple_repeat 3 48 0 3 1285 1387 195 93 0 chr3 91857624 91857756 -67742027 + L1VL4 LINE L1 1105 1267 -2348 3 1285 3673 144 20 9 chr3 91857751 91858636 -67741147 + Lx2B LINE L1 5185 6083 -917 3 1285 908 241 146 11 chr3 91858636 91858896 -67740887 + ORR1C2 LTR MaLR 89 383 -1 3 1285 960 162 78 0 chr3 91858893 91859041 -67740742 + B2_Mm2 SINE B2 2 153 -42 3 1285 357 24 0 0 chr3 91859041 91859083 -67740700 + (TA)n Simple_repeat Simple_repeat 2 43 0 3 1285 960 162 78 0 chr3 91859083 91859113 -67740670 + B2_Mm2 SINE B2 154 192 -3 3 1285 23 33 0 0 chr3 91859148 91859178 -67740605 + AT_rich Low_complexity Low_complexity 1 30 0 3 1285 262 277 49 25 chr3 91859178 91859341 -67740442 - L1M4b LINE L1 -5549 1785 1619 3 1285 721 232 107 96 chr3 91859379 91859670 -67740113 + MTE2a LTR MaLR 86 379 0 3 1285 397 195 105 19 chr3 91860988 91861170 -67738613 + RLTR13D3 LTR ERVK 983 1066 -48 3 1285 52 17 0 0 chr3 91861362 91861421 -67738362 + AT_rich Low_complexity Low_complexity 1 59 0 3 1285 1387 85 11 0 chr3 91861834 91862023 -67737760 + B2_Mm1t SINE B2 1 191 -2 3 1285 1167 314 45 36 chr3 91862578 91863130 -67736653 - RMER15-int LTR ERVL -3374 1625 1069 3 1285 198 0 0 0 chr3 91863493 91863515 -67736268 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 3 1285 529 308 110 8 chr3 91864182 91864418 -67735365 - RMER15 LTR ERVL -40 535 276 3 1285 300 154 0 0 chr3 91864474 91864526 -67735257 + CT-rich Low_complexity Low_complexity 4 55 0 3 1285 742 220 7 0 chr3 91864533 91864674 -67735109 - B1_Mur3 SINE Alu -7 142 1 3 1285 1005 220 19 14 chr3 91864908 91865120 -67734663 + ORR1D1 LTR MaLR 1 213 -161 3 1285 666 151 79 0 chr3 91865649 91865775 -67734008 + ORR1D1 LTR MaLR 239 374 0 3 1285 335 304 34 7 chr3 91865788 91865937 -67733846 + L1MA4 LINE L1 2398 2550 -4299 3 1285 231 232 18 0 chr3 91866030 91866086 -67733697 + L1MEf LINE L1 1542 1598 -4602 3 1285 385 305 21 28 chr3 91866106 91866251 -67733532 + L1MA4 LINE L1 3231 3374 -3471 3 1285 440 241 43 12 chr3 91866264 91866428 -67733355 + L1MA4 LINE L1 5599 5767 -1075 3 1285 322 307 138 6 chr3 91866485 91866770 -67733013 + L1MA4 LINE L1 6155 6470 -532 3 1285 940 219 48 0 chr3 91866771 91866958 -67732825 + B3 SINE B2 9 204 -12 3 1285 310 276 83 6 chr3 91866984 91867141 -67732642 + L1MA4 LINE L1 6460 6628 -374 3 1285 576 29 0 0 chr3 91867158 91867228 -67732555 + (TA)n Simple_repeat Simple_repeat 2 71 0 3 1285 2355 236 95 77 chr3 91867560 91868226 -67731557 + RMER13A LTR ERVK 1 678 -182 3 1285 526 292 10 73 chr3 91868287 91868479 -67731304 + RMER13A LTR ERVK 681 860 0 3 1285 2930 93 5 2 chr3 91868914 91869313 -67730470 + MTB LTR MaLR 1 400 0 3 1285 2580 288 69 49 chr3 91869503 91871282 -67728501 + Lx8 LINE L1 1259 3103 -3043 3 1285 1677 268 72 8 chr3 91871280 91871791 -67727992 + Lx9 LINE L1 6491 7034 -610 3 1285 242 267 13 0 chr3 91871822 91871897 -67727886 - L1M4 LINE L1 -1329 4817 4742 3 1285 297 302 8 30 chr3 91871947 91872080 -67727703 + L1M2 LINE L1 4852 4981 -1162 3 1285 651 298 39 26 chr3 91872248 91872336 -67727447 + Lx8 LINE L1 5109 5201 -679 3 1285 2890 103 23 2 chr3 91872336 91872735 -67727048 + MTB_Mm LTR MaLR 1 407 0 3 1285 651 298 39 26 chr3 91872735 91872956 -67726827 + Lx8 LINE L1 5202 5422 -458 3 1285 4023 179 48 26 chr3 91873659 91874549 -67725234 + MYSERV16_I-int LTR ERVK 1 910 -1416 3 1285 1776 106 56 86 chr3 91874554 91874771 -67725012 + MYSERV16_I-int LTR ERVK 1085 1315 -1011 3 1285 3177 73 0 15 chr3 91874771 91875364 -67724419 + L1_Mus1 LINE L1 6157 6567 0 3 1285 1776 106 56 86 chr3 91875364 91875540 -67724243 + MYSERV16_I-int LTR ERVK 1316 1466 -860 3 1285 22111 110 4 3 chr3 91875553 91879057 -67720726 - L1_Mus2 LINE L1 -65 6501 3002 3 1285 309 51 0 0 chr3 91879057 91879096 -67720687 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 3 1285 22111 124 5 4 chr3 91879096 91879832 -67719951 - L1_Mus2 LINE L1 -2882 3001 2258 3 1285 694 280 11 18 chr3 91879913 91880186 -67719597 - L1VL2 LINE L1 -5933 402 132 3 1285 761 112 95 50 chr3 91880193 91880372 -67719411 + MYSERV16_I-int LTR ERVK 2138 2324 -2 3 1285 1933 209 18 86 chr3 91880374 91880889 -67718894 + RLTR20A LTR ERVK 1 431 -103 3 1285 360 0 0 0 chr3 91880889 91880929 -67718854 + (TG)n Simple_repeat Simple_repeat 1 40 0 3 1285 1175 268 50 198 chr3 91880929 91881033 -67718750 + RLTR20A LTR ERVK 432 528 -6 3 1285 700 303 14 22 chr3 91881061 91881464 -67718319 + Lx8 LINE L1 5449 5849 -1847 3 1286 348 191 45 211 chr3 91881485 91881684 -67718099 - RLTR23 LTR ERV1 -21 409 244 3 1286 304 59 19 19 chr3 91882135 91882187 -67717596 + (TTTG)n Simple_repeat Simple_repeat 2 53 0 3 1286 563 286 15 15 chr3 91882187 91882315 -67717468 - B1_Mur1 SINE Alu -10 139 10 3 1286 770 278 128 52 chr3 91882553 91883076 -67716707 + Lx8 LINE L1 6892 7454 -19 3 1286 291 269 0 0 chr3 91884501 91884744 -67715039 + (CCG)n Simple_repeat Simple_repeat 1 243 0 3 1286 252 186 0 0 chr3 91884867 91884926 -67714857 + (CCG)n Simple_repeat Simple_repeat 3 61 0 3 1286 240 321 0 0 chr3 91884948 91885060 -67714723 + (CCG)n Simple_repeat Simple_repeat 1 112 0 3 1286 463 265 0 17 chr3 91885090 91885444 -67714339 + (CCG)n Simple_repeat Simple_repeat 1 347 0 3 1286 243 263 0 20 chr3 91885506 91885827 -67713956 + (CCG)n Simple_repeat Simple_repeat 1 314 0 3 1286 233 231 158 49 chr3 91887831 91887913 -67711870 + MIRc SINE MIR 17 107 -161 3 1286 922 293 78 23 chr3 91889108 91889635 -67710148 - L1MA4 LINE L1 -386 5914 5353 3 1286 1090 121 40 0 chr3 91889635 91889808 -67709975 + B2_Mm2 SINE B2 2 181 -14 3 1286 922 304 79 30 chr3 91889808 91889968 -67709815 - L1MA4 LINE L1 -948 5352 5162 3 1286 475 233 22 0 chr3 91890000 91890090 -67709693 - B3 SINE B2 -124 92 1 3 1286 230 319 127 5 chr3 91890237 91890442 -67709341 + L1MD LINE L1 3720 3949 -2197 3 1286 359 274 82 36 chr3 91890772 91890992 -67708791 - L1MA4 LINE L1 -975 5168 4939 3 1286 554 231 87 6 chr3 91891326 91891487 -67708296 - MER33 DNA MER1_type -104 220 47 3 1286 537 298 8 0 chr3 91891713 91891834 -67707949 + B1_Mur1 SINE Alu 1 122 -27 3 1286 339 294 187 8 chr3 91892044 91892311 -67707472 - L1MA5 LINE L1 -47 6253 5939 3 1286 450 0 0 0 chr3 91894656 91894706 -67705077 + (TG)n Simple_repeat Simple_repeat 2 51 0 3 1286 249 287 56 22 chr3 91895593 91895682 -67704101 - PB1D7 SINE Alu -3 117 26 3 1286 390 42 0 0 chr3 91896427 91896475 -67703308 + (TG)n Simple_repeat Simple_repeat 1 48 0 3 1286 342 0 0 0 chr3 91897156 91897194 -67702589 + (TC)n Simple_repeat Simple_repeat 1 38 0 3 1286 220 177 14 127 chr3 91897781 91897852 -67701931 - L2b LINE L2 -208 3167 3105 3 1286 208 354 25 6 chr3 91897932 91898094 -67701689 + (TATG)n Simple_repeat Simple_repeat 4 168 0 3 1286 207 325 39 102 chr3 91898613 91898740 -67701043 + L2b LINE L2 3241 3387 0 3 1286 248 239 0 43 chr3 91898918 91898988 -67700795 + GA-rich Low_complexity Low_complexity 4 70 0 3 1286 205 346 77 29 chr3 91899838 91899942 -67699841 + MIRm SINE MIR 42 150 -126 3 1286 1536 72 9 18 chr3 91899988 91900213 -67699570 + L1_Mus3 LINE L1 6416 6638 0 3 1286 216 343 82 69 chr3 91900641 91900873 -67698910 - MIRb SINE MIR 0 268 34 3 1286 281 26 0 26 chr3 91900882 91900921 -67698862 + (TTTTG)n Simple_repeat Simple_repeat 2 39 0 4 1286 218 217 28 42 chr3 91902073 91902145 -67697638 + CT-rich Low_complexity Low_complexity 4 74 0 4 1286 263 359 13 7 chr3 91902993 91903208 -67696575 + (CACCAT)n Simple_repeat Simple_repeat 1 216 0 4 1286 210 299 145 55 chr3 91903281 91903426 -67696357 + L3 LINE CR1 4138 4295 -194 4 1286 22 0 0 0 chr3 91903627 91903649 -67696134 + AT_rich Low_complexity Low_complexity 1 22 0 4 1286 204 427 55 6 chr3 91903922 91904087 -67695696 + MIR SINE MIR 8 180 -82 4 1286 6080 50 22 0 chr3 91904169 91904927 -67694856 - L1Md_F2 LINE L1 -2 6580 5806 4 1286 568 301 7 0 chr3 91905125 91905271 -67694512 + B1_Mur1 SINE Alu 1 147 -2 4 1286 227 415 16 0 chr3 91906496 91906619 -67693164 - L2c LINE L2 -19 3368 3244 4 1286 280 261 124 24 chr3 91906941 91907110 -67692673 - Lx7 LINE L1 0 7696 7511 4 1286 288 53 0 0 chr3 91907125 91907163 -67692620 + (CA)n Simple_repeat Simple_repeat 2 39 0 4 1286 1966 228 35 0 chr3 91907233 91907662 -67692121 - Lx7 LINE L1 -698 6998 6555 4 1286 414 0 0 0 chr3 91907706 91907752 -67692031 + (TA)n Simple_repeat Simple_repeat 2 47 0 4 1286 216 67 0 0 chr3 91908810 91908840 -67690943 + (TG)n Simple_repeat Simple_repeat 2 31 0 4 1286 257 323 55 0 chr3 91908842 91908969 -67690814 - MIRb SINE MIR -2 266 133 4 1286 260 265 0 10 chr3 91909743 91909842 -67689941 + L1MA8 LINE L1 6191 6288 -3 4 1286 22 56 0 0 chr3 91909891 91909927 -67689856 + AT_rich Low_complexity Low_complexity 1 36 0 4 1286 264 210 48 16 chr3 91910400 91910463 -67689320 - B4A SINE B4 -227 65 1 4 1286 217 356 50 60 chr3 91910557 91910775 -67689008 + MIR SINE MIR 23 238 -24 4 1286 254 266 158 20 chr3 91910826 91911029 -67688754 - L1M5 LINE L1 -663 5577 5347 4 1286 207 0 0 0 chr3 91911274 91911297 -67688486 + (CAGT)n Simple_repeat Simple_repeat 3 25 0 4 1286 636 301 24 6 chr3 91911311 91911478 -67688305 - B3A SINE B2 -6 192 23 4 1286 587 313 9 70 chr3 91911436 91911649 -67688134 - B4A SINE B4 -92 200 1 4 1286 1009 242 0 10 chr3 91911817 91912009 -67687774 - B3 SINE B2 -26 190 1 4 1286 375 258 7 29 chr3 91912418 91912554 -67687229 - L1MC3 LINE L1 -6 7779 7647 4 1286 681 296 26 26 chr3 91912587 91912761 -67687022 + B3 SINE B2 8 183 -15 4 1286 236 77 26 0 chr3 91912761 91912800 -67686983 + (CA)n Simple_repeat Simple_repeat 1 40 0 4 1286 652 296 26 26 chr3 91912800 91912816 -67686967 + B3A SINE B2 184 198 0 4 1286 522 304 51 16 chr3 91912845 91913099 -67686684 - L1MC3 LINE L1 -159 7626 7364 4 1286 22 35 0 0 chr3 91913917 91913946 -67685837 + AT_rich Low_complexity Low_complexity 1 29 0 4 1286 22 0 0 0 chr3 91914207 91914229 -67685554 + AT_rich Low_complexity Low_complexity 1 22 0 4 1286 694 174 118 0 chr3 91914229 91914337 -67685446 - Lx4A LINE L1 -3 7055 6937 4 1286 471 18 0 0 chr3 91914337 91914393 -67685390 + (CA)n Simple_repeat Simple_repeat 1 56 0 4 1286 694 174 118 0 chr3 91914393 91914428 -67685355 - Lx4A LINE L1 -122 6936 6896 4 1286 194 338 13 93 chr3 91915490 91915640 -67684143 + L2c LINE L2 3245 3382 -5 4 1286 1599 227 62 28 chr3 91917868 91918221 -67681562 - ORR1D2 LTR MaLR -2 368 4 4 1286 437 161 11 0 chr3 91918229 91918316 -67681467 + (CAT)n Simple_repeat Simple_repeat 2 89 0 4 1286 381 339 30 76 chr3 91918739 91918937 -67680846 - ORR1D2 LTR MaLR -53 317 129 4 1286 186 401 99 32 chr3 91919154 91919466 -67680317 + L2b LINE L2 2139 2471 -948 4 1286 1719 170 21 54 chr3 91919648 91920072 -67679711 - RMER17C LTR ERVK 0 410 1 4 1286 282 29 0 0 chr3 91920201 91920236 -67679547 + (TG)n Simple_repeat Simple_repeat 2 36 0 4 1286 186 402 67 17 chr3 91920411 91920530 -67679253 + L2b LINE L2 3226 3350 -25 4 1286 215 325 137 0 chr3 91920595 91920712 -67679071 - MIRb SINE MIR -107 161 29 4 1286 331 294 90 40 chr3 91920922 91921145 -67678638 - L1M5 LINE L1 -398 5775 5542 4 1286 189 107 0 0 chr3 91921229 91921257 -67678526 + (TTTTTG)n Simple_repeat Simple_repeat 2 29 0 4 1286 358 344 0 0 chr3 91922581 91922671 -67677112 - MER81 DNA AcHobo -20 94 5 4 1286 1010 97 7 14 chr3 91923072 91923211 -67676572 + B1_Mus2 SINE Alu 2 139 -8 4 1286 315 0 0 0 chr3 91923211 91923246 -67676537 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 4 1286 693 0 0 0 chr3 91923716 91923793 -67675990 + (TTCC)n Simple_repeat Simple_repeat 1 77 0 4 1286 1065 79 24 0 chr3 91923794 91923959 -67675824 + (TTCTCC)n Simple_repeat Simple_repeat 3 171 0 4 1286 181 309 72 14 chr3 91924924 91924993 -67674790 + MIRm SINE MIR 177 249 -27 4 1286 747 118 22 0 chr3 91927687 91927822 -67671961 + (GA)n Simple_repeat Simple_repeat 2 139 0 4 1286 3003 34 0 0 chr3 91928920 91929275 -67670508 - L1Md_F2 LINE L1 -1 6581 6227 4 1286 24 32 0 0 chr3 91929767 91929798 -67669985 + AT_rich Low_complexity Low_complexity 1 31 0 4 1286 731 265 19 9 chr3 91929929 91930142 -67669641 + B3 SINE B2 1 215 -1 4 1286 477 0 0 0 chr3 91930293 91930346 -67669437 + (TTTTG)n Simple_repeat Simple_repeat 3 55 0 4 1286 535 125 15 30 chr3 91930415 91930462 -67669321 + T-rich Low_complexity Low_complexity 86 133 0 4 1286 1389 61 0 0 chr3 91930462 91930642 -67669141 + (TTCCC)n Simple_repeat Simple_repeat 1 180 0 4 1286 535 125 15 30 chr3 91930642 91930709 -67669074 + T-rich Low_complexity Low_complexity 19 85 0 4 1286 1158 55 14 0 chr3 91930709 91930854 -67668929 - B1_Mm SINE Alu 0 147 1 4 1286 535 125 15 30 chr3 91930854 91930870 -67668913 + T-rich Low_complexity Low_complexity 5 18 0 4 1286 340 297 101 7 chr3 91931040 91931179 -67668604 + MLT1D LTR MaLR 249 400 -105 4 1286 1628 222 50 43 chr3 91931207 91931389 -67668394 + MTD LTR MaLR 18 210 -209 4 1286 2041 93 140 3 chr3 91931389 91931703 -67668080 + Lx LINE L1 6295 6651 -3 4 1286 1628 222 50 43 chr3 91931703 91931919 -67667864 + MTD LTR MaLR 211 419 0 4 1286 185 299 225 25 chr3 91932524 91932644 -67667139 + MIR3 SINE MIR 62 205 -3 4 1286 197 184 0 39 chr3 91937502 91937553 -67662230 + GA-rich Low_complexity Low_complexity 3 51 0 4 1286 994 123 64 0 chr3 91938062 91938233 -67661550 - URR1A DNA MER1_type 0 226 45 4 1286 209 306 42 2 chr3 91938305 91938392 -67661391 - MIR SINE MIR -84 184 84 4 1286 883 165 202 0 chr3 91938417 91938605 -67661178 - URR1A DNA MER1_type 0 226 1 4 1286 285 75 0 0 chr3 91938633 91938673 -67661110 + (TC)n Simple_repeat Simple_repeat 1 40 0 4 1286 1650 187 191 8 chr3 91940485 91940862 -67658921 + RLTR41 LTR ERV1 1 446 0 4 1286 714 283 82 112 chr3 91942089 91942546 -67657237 + MuRRS4-int LTR ERV1 1545 1998 -5780 4 1286 1131 109 0 0 chr3 91942546 91942866 -67656917 + (GAAA)n Simple_repeat Simple_repeat 1 320 0 4 1286 714 289 86 103 chr3 91942866 91943412 -67656371 + MuRRS4-int LTR ERV1 1895 2447 -5109 4 1286 1419 310 89 72 chr3 91943451 91944148 -67655635 + MuRRS4-int LTR ERV1 2754 3448 -1615 4 1286 623 100 20 0 chr3 91944148 91944248 -67655535 + (TATG)n Simple_repeat Simple_repeat 3 104 0 4 1286 1419 310 89 72 chr3 91944248 91944790 -67654993 + MuRRS4-int LTR ERV1 3449 4015 -1048 4 1286 425 316 29 49 chr3 91945610 91945853 -67653930 + RLTR6-int LTR ERV1 7447 7684 -94 4 1286 1943 152 223 24 chr3 91945945 91946317 -67653466 + RLTR41 LTR ERV1 1 446 0 4 1286 188 0 74 0 chr3 91947148 91947175 -67652608 + (TCTCTG)n Simple_repeat Simple_repeat 2 30 0 4 1286 450 0 0 0 chr3 91947178 91947228 -67652555 + (TG)n Simple_repeat Simple_repeat 2 51 0 4 1286 1148 233 5 14 chr3 91947558 91947776 -67652007 - B3 SINE B2 0 216 1 4 1286 204 200 15 104 chr3 91948943 91949010 -67650773 + MIR SINE MIR 3 63 -199 4 1286 606 28 0 0 chr3 91949257 91949329 -67650454 + (TCCC)n Simple_repeat Simple_repeat 1 72 0 4 1286 261 267 11 43 chr3 91949412 91949506 -67650277 + C-rich Low_complexity Low_complexity 3 93 0 4 1286 1323 103 27 0 chr3 91949506 91949690 -67650093 - B2_Mm1t SINE B2 -4 189 1 4 1286 1088 43 0 14 chr3 91949693 91949836 -67649947 + (TCCC)n Simple_repeat Simple_repeat 2 142 0 4 1286 504 0 0 0 chr3 91949836 91949891 -67649892 + (TTTC)n Simple_repeat Simple_repeat 2 57 0 4 1286 259 268 31 123 chr3 91949971 91950039 -67649744 - BC1_Mm scRNA scRNA -5 147 1 4 1286 347 279 0 85 chr3 91950039 91950133 -67649650 - B4 SINE B4 -206 86 1 4 1286 227 227 43 43 chr3 91950380 91950449 -67649334 + B4 SINE B4 3 71 -221 4 1286 227 318 92 70 chr3 91950467 91950609 -67649174 + B4A SINE B4 126 270 -22 4 1286 379 202 36 55 chr3 91950772 91950882 -67648901 - Lx8 LINE L1 -2 7471 7364 4 1286 869 267 62 18 chr3 91950849 91951124 -67648659 - Lx8 LINE L1 -243 7230 6944 4 1286 456 158 9 159 chr3 91951124 91951237 -67648546 - RLTR16 LTR ERVK 0 505 410 4 1286 453 226 29 43 chr3 91951245 91951384 -67648399 + Lx7 LINE L1 7016 7152 -544 4 1286 727 184 84 51 chr3 91951458 91951636 -67648147 - B2_Mm2 SINE B2 -10 185 2 4 1286 243 0 0 0 chr3 91951665 91951692 -67648091 + (CTG)n Simple_repeat Simple_repeat 2 28 0 4 1286 567 0 0 0 chr3 91951692 91951755 -67648028 + (TTC)n Simple_repeat Simple_repeat 3 65 0 4 1286 646 62 21 0 chr3 91951755 91951851 -67647932 + (TC)n Simple_repeat Simple_repeat 1 98 0 4 1286 460 0 33 0 chr3 91953026 91953086 -67646697 + (TCTA)n Simple_repeat Simple_repeat 4 65 0 4 1286 422 253 210 17 chr3 91954545 91954726 -67645057 - B3 SINE B2 0 216 1 4 1286 442 181 0 0 chr3 91954819 91954902 -67644881 - L1_Mur2 LINE L1 -5813 899 817 4 1286 4068 228 50 13 chr3 91954904 91955841 -67643942 + Lx5 LINE L1 6078 7049 -1 4 1286 427 288 20 11 chr3 91955840 91956021 -67643762 + L1MA7 LINE L1 5701 5878 -302 4 1286 376 194 38 67 chr3 91956052 91956157 -67643626 - MLT1D LTR MaLR -403 102 1 4 1286 450 0 0 0 chr3 91956252 91956302 -67643481 + (CA)n Simple_repeat Simple_repeat 2 51 0 4 1286 300 282 34 8 chr3 91957580 91957698 -67642085 + Charlie1b DNA MER1_type 389 509 -14 4 1286 453 36 0 0 chr3 91957713 91957768 -67642015 + (CA)n Simple_repeat Simple_repeat 1 55 0 4 1286 213 39 0 0 chr3 91959694 91959720 -67640063 + (A)n Simple_repeat Simple_repeat 1 26 0 4 1286 1619 192 10 3 chr3 91960378 91960666 -67639117 - RLTR24 LTR ERV1 0 529 240 4 1286 783 83 9 0 chr3 91960667 91960776 -67639007 + ORR1A4 LTR MaLR 216 325 -4 5 1286 231 204 88 9 chr3 91961071 91961185 -67638598 + L1M5 LINE L1 3329 3451 -2695 5 1286 506 299 43 31 chr3 91961231 91961524 -67638259 + MLT2C1 LTR ERVL 57 560 0 5 1286 291 344 33 7 chr3 91961526 91961678 -67638105 + L1MD LINE L1 3462 3617 -2529 5 1286 602 168 0 7 chr3 91961976 91962114 -67637669 + (TG)n Simple_repeat Simple_repeat 2 138 0 5 1286 847 305 19 89 chr3 91962123 91962436 -67637347 - B4 SINE B4 0 292 2 5 1286 186 43 0 0 chr3 91962737 91962760 -67637023 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 5 1286 276 264 53 53 chr3 91962767 91962843 -67636940 - B1F SINE Alu -59 90 15 5 1286 353 123 15 0 chr3 91963038 91963103 -67636680 + (TC)n Simple_repeat Simple_repeat 1 66 0 5 1286 273 162 0 0 chr3 91963106 91963174 -67636609 + (CA)n Simple_repeat Simple_repeat 1 68 0 5 1286 23 33 0 0 chr3 91963306 91963336 -67636447 + AT_rich Low_complexity Low_complexity 1 30 0 5 1286 653 250 29 7 chr3 91963348 91963485 -67636298 - B1_Mur1 SINE Alu -7 142 3 5 1286 470 197 0 8 chr3 91963745 91963863 -67635920 + CT-rich Low_complexity Low_complexity 3 119 0 5 1286 10346 64 5 1 chr3 91966106 91966881 -67632902 + L1Md_F2 LINE L1 4275 5049 -834 5 1286 201 39 0 0 chr3 91966881 91966907 -67632876 + (G)n Simple_repeat Simple_repeat 1 26 0 5 1286 10346 64 5 1 chr3 91966907 91967438 -67632345 + L1Md_F2 LINE L1 5050 5584 -299 5 1286 8474 55 2 2 chr3 91967438 91968433 -67631350 + L1Md_F2 LINE L1 5587 6581 -1 5 1286 272 284 117 33 chr3 91969015 91969135 -67630648 + MLT1H1 LTR MaLR 1 130 -425 5 1286 193 416 54 0 chr3 91969633 91969782 -67630001 - MIR SINE MIR -93 169 13 5 1286 207 167 0 0 chr3 91970836 91970861 -67628922 + T-rich Low_complexity Low_complexity 19 43 0 5 1286 1141 88 0 52 chr3 91970861 91971016 -67628767 - B1_Mus2 SINE Alu 0 147 1 5 1286 207 167 0 0 chr3 91971016 91971032 -67628751 + T-rich Low_complexity Low_complexity 3 18 0 5 1286 659 328 16 5 chr3 91971093 91971283 -67628500 + B3A SINE B2 1 192 -6 5 1286 728 270 141 33 chr3 91971339 91971672 -67628111 + Lx8 LINE L1 7101 7469 -4 5 1286 511 226 11 0 chr3 91971804 91971897 -67627886 - RSINE1 SINE B4 -53 112 19 5 1286 213 410 0 0 chr3 91971829 91971912 -67627871 - B3 SINE B2 -131 85 3 5 1286 336 48 0 0 chr3 91974394 91974436 -67625347 + (TTTA)n Simple_repeat Simple_repeat 2 43 0 5 1286 262 182 303 0 chr3 91974436 91974502 -67625281 - ID_B1 SINE B4 -9 215 130 5 1286 257 330 9 27 chr3 91975105 91975217 -67624566 - MLT1A1 LTR MaLR 0 408 299 5 1286 1069 103 157 18 chr3 91975404 91975621 -67624162 + Lx2 LINE L1 6751 6997 0 5 1286 369 0 0 0 chr3 91975695 91975736 -67624047 + (CA)n Simple_repeat Simple_repeat 2 42 0 5 1286 3906 36 2 17 chr3 91977893 91978366 -67621417 + L1Md_F2 LINE L1 6030 6495 -87 5 1286 2247 236 5 2 chr3 91978366 91978787 -67620996 - Lx6 LINE L1 -18 7442 7021 5 1286 686 322 72 15 chr3 91978787 91979052 -67620731 + Lx8 LINE L1 6841 7120 -353 5 1286 7230 83 8 1 chr3 91979185 91980137 -67619646 - L1_Mus3 LINE L1 -1 6637 5679 5 1286 2710 102 0 0 chr3 91980137 91980517 -67619266 + Lx5 LINE L1 5301 5680 -1370 5 1286 288 0 0 0 chr3 91981158 91981190 -67618593 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 5 1286 923 276 83 25 chr3 91981337 91982109 -67617674 + L1M2 LINE L1 4945 5787 -513 5 1286 445 320 0 16 chr3 91982110 91982237 -67617546 + Lx8 LINE L1 6877 7001 -472 5 1286 319 285 69 12 chr3 91982273 91982433 -67617350 - L1M2 LINE L1 -1239 4904 4736 5 1286 261 341 0 11 chr3 91982581 91982673 -67617110 + RMER15 LTR ERVL 372 462 -113 5 1286 450 309 54 0 chr3 91982826 91983053 -67616730 + L1MA4 LINE L1 5735 5974 -326 5 1286 275 140 19 39 chr3 91983421 91983473 -67616310 + B1_Mus1 SINE Alu 10 60 -88 5 1286 186 326 0 0 chr3 91983473 91983559 -67616224 + G-rich Low_complexity Low_complexity 5 90 0 5 1286 210 100 122 24 chr3 91983617 91983699 -67616084 + (CAGG)n Simple_repeat Simple_repeat 2 91 0 5 1286 672 189 16 74 chr3 91983699 91983949 -67615834 + (CAGAGA)n Simple_repeat Simple_repeat 1 235 0 5 1286 543 193 16 54 chr3 91983854 91984040 -67615743 + GA-rich Low_complexity Low_complexity 2 180 0 5 1286 596 88 111 12 chr3 91984053 91984215 -67615568 + (CAGG)n Simple_repeat Simple_repeat 2 179 0 5 1286 430 222 25 0 chr3 91984266 91984347 -67615436 + B1_Mur2 SINE Alu 40 122 -27 5 1286 2511 164 17 83 chr3 91984428 91984968 -67614815 + Lx4A LINE L1 6548 7051 -7 5 1286 477 0 0 0 chr3 91984969 91985022 -67614761 + (GAAA)n Simple_repeat Simple_repeat 2 54 0 5 1286 2859 294 50 20 chr3 91985493 91986389 -67613394 + Lx8 LINE L1 6550 7472 -1 5 1286 24 0 0 0 chr3 91986571 91986595 -67613188 + AT_rich Low_complexity Low_complexity 1 24 0 5 1286 205 265 20 0 chr3 91986702 91986751 -67613032 + CT-rich Low_complexity Low_complexity 5 54 0 5 1286 796 270 11 22 chr3 91987253 91987435 -67612348 - B3A SINE B2 -18 180 1 5 1286 203 162 0 0 chr3 91987489 91987526 -67612257 + (CA)n Simple_repeat Simple_repeat 2 38 0 5 1286 671 265 72 77 chr3 91987787 91988257 -67611526 + L1M3 LINE L1 3560 4027 -2113 5 1286 2251 108 12 15 chr3 91989322 91989660 -67610123 + IAPLTR1a_Mm LTR ERVK 1 337 0 5 1286 56050 27 9 8 chr3 91989660 91996130 -67603653 + IAPEz-int LTR ERVK 8 6479 -2 5 1286 2251 108 12 15 chr3 91996132 91996470 -67603313 + IAPLTR1a_Mm LTR ERVK 1 337 0 5 1286 1190 75 0 39 chr3 91998340 91998354 -67601429 - B1_Mm SINE Alu 0 147 136 5 1286 288 0 0 0 chr3 91998354 91998386 -67601397 + (GTTTG)n Simple_repeat Simple_repeat 2 33 0 5 1286 606 28 0 0 chr3 91998386 91998458 -67601325 + (TCTTG)n Simple_repeat Simple_repeat 2 73 0 5 1286 1190 75 0 39 chr3 91998458 91998595 -67601188 - B1_Mm SINE Alu -12 135 2 5 1286 297 0 0 0 chr3 92001556 92001589 -67598194 + (CAAAA)n Simple_repeat Simple_repeat 2 34 0 1 1286 604 203 214 0 chr3 92001970 92002157 -67597626 + MER2 DNA MER2_type 92 318 -27 2 1286 244 323 10 0 chr3 92002373 92002469 -67597314 + A-rich Low_complexity Low_complexity 4 100 0 3 1286 425 245 29 41 chr3 92002752 92002922 -67596861 - L1MD3 LINE L1 -101 7894 7727 4 1286 868 111 65 0 chr3 92002978 92003131 -67596652 - L1_Mus3 LINE L1 0 6638 6476 5 1286 186 289 53 88 chr3 92003226 92003340 -67596443 + MIR SINE MIR 43 152 -110 6 1286 1801 169 101 42 chr3 92003923 92004488 -67595295 - RLTR25B LTR ERVK -375 653 1 7 1286 873 114 0 0 chr3 92005423 92005555 -67594228 + (TTCCC)n Simple_repeat Simple_repeat 3 134 0 8 1286 345 248 78 86 chr3 92005879 92006122 -67593661 - RLTR42-int LTR ERVK -3395 2127 1887 9 1286 46 74 0 0 chr3 92006122 92006217 -67593566 + AT_rich Low_complexity Low_complexity 1 95 0 1 1286 750 23 0 0 chr3 92006526 92006614 -67593169 + (TTTTC)n Simple_repeat Simple_repeat 2 89 0 1 1286 3500 95 2 6 chr3 92006783 92007268 -67592515 + L1_Mus1 LINE L1 6084 6566 -1 1 1286 3418 195 115 23 chr3 92008274 92009379 -67590404 - Lx9 LINE L1 -1605 6039 4814 1 1286 422 203 119 0 chr3 92010427 92010545 -67589238 + B1_Mur2 SINE Alu 1 142 -7 1 1286 7731 46 5 4 chr3 92010688 92012042 -67587741 - L1Md_F3 LINE L1 -2 6582 5228 1 160 561 305 13 53 chr3 92012425 92012650 -67587133 + B3 SINE B2 1 216 0 1 1287 1373 237 19 20 chr3 92014749 92015299 -67584484 - Lx6 LINE L1 -561 6899 6213 1 1287 1409 276 87 45 chr3 92015301 92015872 -67583911 - RLTR1 LTR ERV1 0 624 1 1 1287 778 194 132 85 chr3 92015884 92016245 -67583538 - Lx6 LINE L1 -1289 6171 5794 1 1287 23 54 0 0 chr3 92016653 92016690 -67583093 + AT_rich Low_complexity Low_complexity 1 37 0 1 1287 207 0 0 0 chr3 92016999 92017022 -67582761 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2 1287 456 19 0 0 chr3 92017117 92017170 -67582613 + (TC)n Simple_repeat Simple_repeat 2 54 0 2 1287 185 35 69 0 chr3 92017178 92017207 -67582576 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 2 1287 596 279 0 8 chr3 92017405 92017528 -67582255 + RSINE1 SINE B4 27 148 -17 2 1287 420 20 0 0 chr3 92017995 92018044 -67581739 + (TC)n Simple_repeat Simple_repeat 2 50 0 2 1287 333 0 0 0 chr3 92018044 92018080 -67581703 + (TA)n Simple_repeat Simple_repeat 2 38 0 2 1287 781 218 95 143 chr3 92019344 92019756 -67580027 + RLTR9C LTR ERVK 2 393 0 2 1287 12833 57 1 0 chr3 92020237 92022632 -67577151 - L1Md_F3 LINE L1 -14 6570 4173 2 1287 382 174 11 11 chr3 92023791 92023884 -67575899 - Lx2 LINE L1 -1 6996 6904 2 1287 3579 115 147 1 chr3 92024790 92025437 -67574346 + RLTR22_Mur LTR ERVK 130 870 -978 2 1287 220 225 24 24 chr3 92025909 92025991 -67573792 + (TTTA)n Simple_repeat Simple_repeat 1 82 0 3 1287 569 244 22 51 chr3 92025994 92026132 -67573651 - B1_Mus1 SINE Alu -1 147 14 3 1287 456 245 55 20 chr3 92026135 92026281 -67573502 + Lx4B LINE L1 6902 7052 -6 3 1287 23 0 0 0 chr3 92026377 92026400 -67573383 + AT_rich Low_complexity Low_complexity 1 23 0 3 1287 41 0 0 0 chr3 92026556 92026597 -67573186 + AT_rich Low_complexity Low_complexity 1 41 0 3 1287 236 205 119 52 chr3 92027145 92027279 -67572504 - L1MA6 LINE L1 -54 6246 6104 3 1287 29 0 0 0 chr3 92027532 92027561 -67572222 + AT_rich Low_complexity Low_complexity 1 29 0 3 1287 427 300 100 0 chr3 92027561 92027701 -67572082 - ORR1D1 LTR MaLR -49 325 172 3 1287 23 0 0 0 chr3 92027701 92027724 -67572059 + AT_rich Low_complexity Low_complexity 1 23 0 3 1287 2280 133 13 21 chr3 92027744 92028121 -67571662 - Lx3A LINE L1 -3 6978 6605 3 1287 240 253 23 11 chr3 92028567 92028655 -67571128 + (TCTCTG)n Simple_repeat Simple_repeat 6 94 0 4 1287 513 0 0 0 chr3 92028664 92028721 -67571062 + (TG)n Simple_repeat Simple_repeat 2 58 0 4 1287 180 152 0 0 chr3 92029732 92029765 -67570018 + A-rich Low_complexity Low_complexity 2 34 0 4 1287 391 200 29 0 chr3 92029918 92029988 -67569795 + B3A SINE B2 1 72 -126 4 1287 412 265 41 36 chr3 92030132 92030350 -67569433 - L1MD3 LINE L1 -91 7904 7727 4 1287 883 119 25 6 chr3 92030369 92030529 -67569254 - L1_Mus3 LINE L1 0 6638 6476 4 1287 1758 181 170 11 chr3 92032620 92033185 -67566598 - RLTR25B LTR ERVK -373 655 1 4 1287 363 60 45 0 chr3 92034088 92034155 -67565628 + (TTTTG)n Simple_repeat Simple_repeat 2 71 0 4 1287 332 218 132 14 chr3 92034339 92034483 -67565300 - RLTR42-int LTR ERVK -3282 2240 2080 4 1287 459 125 0 0 chr3 92034938 92035010 -67564773 + (T)n Simple_repeat Simple_repeat 1 72 0 4 1287 519 213 79 152 chr3 92035187 92035581 -67564202 - RLTR42-int LTR ERVK -3282 2240 1876 5 1287 25 75 0 0 chr3 92035595 92035648 -67564135 + AT_rich Low_complexity Low_complexity 1 53 0 5 1287 22 0 0 0 chr3 92036046 92036068 -67563715 + AT_rich Low_complexity Low_complexity 1 22 0 5 1287 11806 42 0 0 chr3 92036153 92037685 -67562098 + L1Md_F3 LINE L1 2670 4201 -1682 5 1287 5292 55 27 0 chr3 92037687 92038398 -67561385 + L1Md_F3 LINE L1 4856 5585 -298 5 1287 8012 44 1 6 chr3 92038399 92039388 -67560395 + L1Md_F3 LINE L1 5587 6570 -14 5 1287 3395 110 2 0 chr3 92039408 92039890 -67559893 + L1_Mus1 LINE L1 6084 6566 -1 5 1287 270 189 0 0 chr3 92039907 92039960 -67559823 - RLTR42-int LTR ERVK -3922 1600 1548 5 1287 21 36 0 0 chr3 92040202 92040230 -67559553 + AT_rich Low_complexity Low_complexity 1 28 0 5 1287 6206 78 8 16 chr3 92040970 92041850 -67557933 + RLTR13A3 LTR ERVK 106 978 0 5 1287 3627 193 97 21 chr3 92041850 92042905 -67556878 - Lx9 LINE L1 -1671 5973 4814 5 1287 1834 113 35 22 chr3 92043910 92044228 -67555555 - RLTRETN_Mm LTR ERVK 0 322 1 5 1287 3067 37 98 5 chr3 92044228 92044666 -67555117 - MMETn-int LTR ERVK 0 4844 4366 5 1287 1733 145 35 22 chr3 92044668 92044986 -67554797 - RLTRETN_Mm LTR ERVK 0 322 1 5 1287 263 202 138 46 chr3 92045025 92045134 -67554649 + MT2B LTR ERVL 160 278 -323 6 1287 428 189 78 0 chr3 92045056 92045146 -67554637 + B1_Mur1 SINE Alu 46 142 -7 6 1287 4652 93 32 32 chr3 92045295 92046735 -67553048 - L1Md_F3 LINE L1 0 6636 5234 6 1287 753 288 18 58 chr3 92047124 92047349 -67552434 + B3 SINE B2 1 216 0 6 1287 230 232 0 51 chr3 92047663 92047722 -67552061 + MER34 LTR ERV1 155 210 -332 6 1287 1352 240 19 17 chr3 92049459 92050009 -67549774 - Lx6 LINE L1 -566 6894 6213 6 1287 1409 276 87 45 chr3 92050011 92050582 -67549201 - RLTR1 LTR ERV1 0 624 1 6 1287 778 194 132 85 chr3 92050594 92050955 -67548828 - Lx6 LINE L1 -1289 6171 5794 6 1287 23 54 0 0 chr3 92051363 92051400 -67548383 + AT_rich Low_complexity Low_complexity 1 37 0 6 1287 207 0 0 0 chr3 92051709 92051732 -67548051 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 6 1287 1113 99 0 0 chr3 92051827 92051988 -67547795 + (TC)n Simple_repeat Simple_repeat 2 162 0 6 1287 185 35 69 0 chr3 92051996 92052025 -67547758 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 7 1287 596 279 0 8 chr3 92052223 92052346 -67547437 + RSINE1 SINE B4 27 148 -17 7 1287 384 22 0 0 chr3 92052813 92052858 -67546925 + (TC)n Simple_repeat Simple_repeat 2 46 0 7 1287 315 0 0 0 chr3 92052858 92052892 -67546891 + (TA)n Simple_repeat Simple_repeat 2 36 0 7 1287 781 218 95 143 chr3 92054156 92054568 -67545215 + RLTR9C LTR ERVK 2 393 0 7 1287 13437 57 1 0 chr3 92055050 92057445 -67542338 - L1Md_F3 LINE L1 -14 6570 4173 7 1287 328 198 50 0 chr3 92058598 92058699 -67541084 - L1_Mus3 LINE L1 -1 6637 6532 7 1287 3599 116 147 1 chr3 92059603 92060250 -67539533 + RLTR22_Mur LTR ERVK 130 870 -978 7 1287 220 225 24 24 chr3 92060722 92060804 -67538979 + (TTTA)n Simple_repeat Simple_repeat 1 82 0 7 1287 570 244 22 51 chr3 92060807 92060945 -67538838 - B1_Mus1 SINE Alu -1 147 14 7 1287 504 245 55 20 chr3 92060948 92061094 -67538689 + Lx4B LINE L1 6902 7052 -6 8 1287 23 0 0 0 chr3 92061190 92061213 -67538570 + AT_rich Low_complexity Low_complexity 1 23 0 8 1287 41 0 0 0 chr3 92061369 92061410 -67538373 + AT_rich Low_complexity Low_complexity 1 41 0 8 1287 259 262 219 29 chr3 92061958 92062269 -67537514 - L1MA6 LINE L1 -54 6246 5877 8 1287 213 65 0 0 chr3 92062346 92062377 -67537406 + (TTAA)n Simple_repeat Simple_repeat 3 33 0 8 1287 410 299 102 0 chr3 92062377 92062514 -67537269 - ORR1D1 LTR MaLR -52 322 172 8 1287 23 0 0 0 chr3 92062514 92062537 -67537246 + AT_rich Low_complexity Low_complexity 1 23 0 8 1287 2256 133 13 21 chr3 92062557 92062934 -67536849 - Lx3A LINE L1 -3 6978 6605 8 1287 240 253 23 11 chr3 92063380 92063468 -67536315 + (TCTCTG)n Simple_repeat Simple_repeat 6 94 0 8 1287 405 0 0 0 chr3 92063477 92063522 -67536261 + (TG)n Simple_repeat Simple_repeat 2 46 0 8 1287 261 182 18 0 chr3 92064336 92064391 -67535392 + RLTR42-int LTR ERVK 2187 2242 -3280 9 1287 180 152 0 0 chr3 92064533 92064566 -67535217 + A-rich Low_complexity Low_complexity 2 34 0 9 1287 389 200 29 0 chr3 92064719 92064789 -67534994 + B3A SINE B2 1 72 -126 9 1287 457 268 40 36 chr3 92064933 92065151 -67534632 - L1MD3 LINE L1 -91 7904 7727 9 1287 883 119 25 6 chr3 92065171 92065331 -67534452 - L1_Mus3 LINE L1 0 6638 6476 9 1287 1756 181 170 11 chr3 92067422 92067987 -67531796 - RLTR25B LTR ERVK -373 655 1 9 1287 363 60 45 0 chr3 92068890 92068957 -67530826 + (TTTTG)n Simple_repeat Simple_repeat 2 71 0 9 1287 368 218 132 14 chr3 92069141 92069285 -67530498 - RLTR42-int LTR ERVK -3282 2240 2080 9 1287 369 145 0 0 chr3 92069740 92069802 -67529981 + (T)n Simple_repeat Simple_repeat 1 62 0 9 1287 609 204 81 155 chr3 92069979 92070373 -67529410 - RLTR42-int LTR ERVK -3282 2240 1876 9 1287 25 75 0 0 chr3 92070387 92070440 -67529343 + AT_rich Low_complexity Low_complexity 1 53 0 1 1287 22 0 0 0 chr3 92070838 92070860 -67528923 + AT_rich Low_complexity Low_complexity 1 22 0 1 1287 12344 42 0 0 chr3 92070945 92072477 -67527306 + L1Md_F3 LINE L1 2670 4201 -1682 1 1287 5550 55 27 0 chr3 92072479 92073190 -67526593 + L1Md_F3 LINE L1 4856 5585 -298 1 1287 7987 44 1 6 chr3 92073191 92074180 -67525603 + L1Md_F3 LINE L1 5587 6570 -14 1 1287 3384 110 2 0 chr3 92074200 92074682 -67525101 + L1_Mus1 LINE L1 6084 6566 -1 1 1287 285 189 0 0 chr3 92074699 92074752 -67525031 - RLTR42-int LTR ERVK -3922 1600 1548 9 1287 21 36 0 0 chr3 92074994 92075022 -67524761 + AT_rich Low_complexity Low_complexity 1 28 0 1 1287 6196 78 8 16 chr3 92075762 92076642 -67523141 + RLTR13A3 LTR ERVK 106 978 0 1 1287 3914 196 96 20 chr3 92076642 92077697 -67522086 - Lx9 LINE L1 -1671 5973 4814 1 1287 1813 113 35 22 chr3 92078702 92079020 -67520763 - RLTRETN_Mm LTR ERVK 0 322 1 1 1287 3229 37 98 5 chr3 92079020 92079458 -67520325 - MMETn-int LTR ERVK 0 4844 4366 1 1287 1718 145 35 22 chr3 92079460 92079778 -67520005 - RLTRETN_Mm LTR ERVK 0 322 1 1 1287 258 202 138 46 chr3 92079817 92079926 -67519857 + MT2B LTR ERVL 160 278 -323 1 1287 423 189 78 0 chr3 92079848 92079938 -67519845 + B1_Mur1 SINE Alu 46 142 -7 1 1287 4885 93 32 32 chr3 92080087 92081527 -67518256 - L1Md_F3 LINE L1 0 6636 5234 1 1287 628 288 18 58 chr3 92081916 92082141 -67517642 + B3 SINE B2 1 216 0 1 1287 233 232 0 51 chr3 92082455 92082514 -67517269 + MER34 LTR ERV1 155 210 -332 1 1287 1465 237 22 19 chr3 92084247 92084801 -67514982 - Lx6 LINE L1 -566 6894 6213 1 1287 1368 277 87 44 chr3 92084803 92085373 -67514410 - RLTR1 LTR ERV1 0 624 1 1 1287 873 191 132 85 chr3 92085385 92085746 -67514037 - Lx6 LINE L1 -1289 6171 5794 1 1287 23 54 0 0 chr3 92086154 92086191 -67513592 + AT_rich Low_complexity Low_complexity 1 37 0 1 1287 207 0 0 0 chr3 92086500 92086523 -67513260 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 1287 248 0 31 0 chr3 92086618 92086650 -67513133 + (TC)n Simple_repeat Simple_repeat 2 34 0 1 1287 185 35 69 0 chr3 92086664 92086693 -67513090 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 1 1287 574 324 0 7 chr3 92086868 92087014 -67512769 + RSINE1 SINE B4 4 148 -17 1 1287 402 21 0 0 chr3 92087481 92087528 -67512255 + (TC)n Simple_repeat Simple_repeat 2 48 0 1 1287 459 0 0 0 chr3 92087528 92087578 -67512205 + (TA)n Simple_repeat Simple_repeat 2 52 0 1 1287 776 218 95 143 chr3 92088841 92089253 -67510530 + RLTR9C LTR ERVK 2 393 0 1 1287 13476 57 1 0 chr3 92089734 92092130 -67507653 - L1Md_F3 LINE L1 -14 6570 4173 1 1287 330 198 50 0 chr3 92093281 92093382 -67506401 - L1_Mus3 LINE L1 -1 6637 6532 1 1287 3600 112 149 1 chr3 92094286 92094932 -67504851 + RLTR22_Mur LTR ERVK 130 870 -978 1 1287 589 237 22 51 chr3 92095485 92095623 -67504160 - B1_Mus1 SINE Alu -1 147 14 1 1287 487 252 55 20 chr3 92095626 92095772 -67504011 + Lx4B LINE L1 6902 7052 -6 1 1287 23 0 0 0 chr3 92095868 92095891 -67503892 + AT_rich Low_complexity Low_complexity 1 23 0 1 1287 41 0 0 0 chr3 92096047 92096088 -67503695 + AT_rich Low_complexity Low_complexity 1 41 0 1 1287 307 225 14 27 chr3 92096498 92096571 -67503212 - Lx9 LINE L1 -527 7117 7046 1 1287 341 348 92 13 chr3 92096570 92096887 -67502896 - Lx9 LINE L1 -756 6888 6547 1 1287 27 29 0 0 chr3 92096892 92096926 -67502857 + AT_rich Low_complexity Low_complexity 1 34 0 1 1287 462 323 10 55 chr3 92097035 92097231 -67502552 - B3A SINE B2 -6 192 5 1 1287 570 29 0 0 chr3 92097231 92097299 -67502484 + (TA)n Simple_repeat Simple_repeat 2 69 0 1 1287 305 253 211 31 chr3 92097635 92097957 -67501826 - L1MA6 LINE L1 -44 6256 5877 1 1287 414 0 0 0 chr3 92098033 92098079 -67501704 + (TTTA)n Simple_repeat Simple_repeat 1 46 0 1 1287 407 299 104 0 chr3 92098080 92098214 -67501569 - ORR1D1 LTR MaLR -55 319 172 1 1287 2179 146 11 21 chr3 92098255 92098633 -67501150 - Lx3A LINE L1 -3 6978 6605 1 1287 232 159 0 0 chr3 92099076 92099165 -67500618 + (TCTG)n Simple_repeat Simple_repeat 1 89 0 1 1287 423 0 0 0 chr3 92099174 92099221 -67500562 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 1287 192 77 0 0 chr3 92100261 92100287 -67499496 + (A)n Simple_repeat Simple_repeat 1 26 0 1 1287 391 200 29 0 chr3 92100445 92100515 -67499268 + B3A SINE B2 1 72 -126 1 1287 462 284 16 27 chr3 92100661 92100849 -67498934 - L1MD3 LINE L1 -91 7904 7719 1 1287 414 0 0 0 chr3 92100865 92100911 -67498872 + (TTTA)n Simple_repeat Simple_repeat 2 47 0 1 1287 1005 94 19 6 chr3 92100924 92101085 -67498698 - L1_Mus3 LINE L1 0 6638 6476 1 1287 205 307 48 41 chr3 92101148 92101294 -67498489 + MIR SINE MIR 6 152 -110 1 1287 1701 182 72 6 chr3 92101867 92101880 -67497903 - RLTR25B LTR ERVK -375 653 641 1 1287 884 113 35 0 chr3 92101880 92102021 -67497762 - L1Md_F2 LINE L1 -12 6570 6425 1 1287 1701 194 111 37 chr3 92102021 92102564 -67497219 - RLTR25B LTR ERVK -388 640 1 1 1287 630 225 55 118 chr3 92103680 92104078 -67495705 - RLTR42-int LTR ERVK -3282 2240 1868 1 1287 43 47 0 0 chr3 92104088 92104152 -67495631 + AT_rich Low_complexity Low_complexity 1 64 0 1 1287 237 163 0 0 chr3 92104438 92104487 -67495296 + T-rich Low_complexity Low_complexity 1 49 0 1 1287 25 75 0 0 chr3 92104521 92104574 -67495209 + AT_rich Low_complexity Low_complexity 1 53 0 1 1287 23 0 0 0 chr3 92104621 92104644 -67495139 + AT_rich Low_complexity Low_complexity 1 23 0 1 1287 3666 75 8 0 chr3 92104666 92105146 -67494637 + L1_Mus1 LINE L1 6084 6567 0 1 1287 534 81 27 0 chr3 92106143 92106217 -67493566 + L1_Mus1 LINE L1 6390 6465 -102 1 1287 2200 230 113 26 chr3 92106217 92107287 -67492496 - Lx9 LINE L1 -1605 6039 4821 1 1287 423 240 174 0 chr3 92108329 92108450 -67491333 + B1_Mur1 SINE Alu 1 142 -7 1 1287 670 291 13 53 chr3 92108957 92109182 -67490601 + B3 SINE B2 1 216 0 1 1287 22 35 0 0 chr3 92112952 92112981 -67486802 + AT_rich Low_complexity Low_complexity 1 29 0 1 1287 1775 201 101 4 chr3 92113084 92113549 -67486234 - Lx9 LINE L1 -8 7636 7127 1 1287 28 29 0 0 chr3 92113638 92113673 -67486110 + AT_rich Low_complexity Low_complexity 1 35 0 1 1287 1820 278 94 84 chr3 92113684 92114967 -67484816 - Lx6 LINE L1 -56 7404 5812 1 1287 378 0 0 0 chr3 92114978 92115020 -67484763 + (T)n Simple_repeat Simple_repeat 1 42 0 1 1287 538 14 0 27 chr3 92115048 92115121 -67484662 - L1Md_T LINE L1 -12 6570 6500 1 1287 1638 108 4 16 chr3 92115172 92115425 -67484358 - L1Md_F2 LINE L1 -12 6570 6321 1 1287 326 119 0 48 chr3 92115429 92115491 -67484292 + L1_Mm LINE L1 4857 4915 -968 1 1287 405 0 0 0 chr3 92115877 92115922 -67483861 + (TTTTA)n Simple_repeat Simple_repeat 3 47 0 1 1287 242 0 61 0 chr3 92116250 92116283 -67483500 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1 1287 191 61 30 0 chr3 92116398 92116431 -67483352 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 1 1287 618 256 0 8 chr3 92116630 92116752 -67483031 + RSINE1 SINE B4 28 148 -17 1 1287 980 178 141 5 chr3 92117366 92117564 -67482219 - URR1B DNA MER1_type 0 225 1 1 1287 342 0 0 0 chr3 92118709 92118747 -67481036 + (TTA)n Simple_repeat Simple_repeat 2 39 0 1 1287 4119 71 2 2 chr3 92118748 92119284 -67480499 - L1Md_F2 LINE L1 -13 6569 6034 1 1287 454 88 33 11 chr3 92122180 92122272 -67477511 - Lx2 LINE L1 0 6997 6904 1 1287 3943 183 165 8 chr3 92123174 92124131 -67475652 + RLTR22_Mus LTR ERVK 138 1244 -564 1 1287 594 262 23 0 chr3 92124656 92124828 -67474955 - Lx9 LINE L1 -733 6911 6736 1 1287 687 197 28 49 chr3 92125178 92125322 -67474461 - B1_Mus1 SINE Alu 0 148 8 1 1287 407 265 58 22 chr3 92125327 92125466 -67474317 + Lx4B LINE L1 6909 7052 -6 1 1287 231 61 0 0 chr3 92125515 92125548 -67474235 + (CAAAAA)n Simple_repeat Simple_repeat 4 36 0 1 1287 33 25 0 0 chr3 92125567 92125607 -67474176 + AT_rich Low_complexity Low_complexity 1 40 0 1 1287 27 49 0 0 chr3 92126582 92126623 -67473160 + AT_rich Low_complexity Low_complexity 1 41 0 1 1287 523 308 10 56 chr3 92126732 92126928 -67472855 - B3A SINE B2 -6 192 6 1 1287 720 35 0 0 chr3 92126934 92127021 -67472762 + (TC)n Simple_repeat Simple_repeat 2 88 0 1 1287 702 0 0 0 chr3 92127706 92127784 -67471999 + (CTATT)n Simple_repeat Simple_repeat 3 80 0 1 1287 198 0 0 0 chr3 92127786 92127808 -67471975 + (TTAA)n Simple_repeat Simple_repeat 3 24 0 1 1287 404 317 97 0 chr3 92127808 92127953 -67471830 - ORR1D1 LTR MaLR -52 322 164 1 1287 2048 157 16 24 chr3 92127997 92128376 -67471407 - Lx3A LINE L1 -3 6978 6603 1 1287 229 188 0 0 chr3 92128819 92128902 -67470881 + (TCTG)n Simple_repeat Simple_repeat 1 83 0 1 1287 261 0 0 0 chr3 92128921 92128950 -67470833 + (TG)n Simple_repeat Simple_repeat 2 30 0 1 1287 358 309 34 65 chr3 92131522 92131907 -67467876 - L1MA4 LINE L1 -415 5885 5510 1 1287 608 251 232 52 chr3 92132892 92133447 -67466336 + Lx7 LINE L1 7037 7691 -5 1 1287 2676 136 21 0 chr3 92133737 92134164 -67465619 + Lx4A LINE L1 6180 6615 -443 1 1287 1970 192 65 1 chr3 92134164 92134915 -67464868 - L1VL4 LINE L1 -4204 1673 884 1 1287 6947 84 17 1 chr3 92136224 92137239 -67462544 - L1_Mus3 LINE L1 -64 6574 5545 1 1287 510 196 0 0 chr3 92137581 92137673 -67462110 - Lx9 LINE L1 -398 7246 7155 1 1287 509 244 30 30 chr3 92137691 92137856 -67461927 - Lx9 LINE L1 -844 6800 6636 1 1287 1114 230 117 0 chr3 92137855 92138198 -67461585 + Lx9 LINE L1 7255 7637 -7 1 1287 761 339 37 3 chr3 92138602 92138901 -67460882 - Lx8 LINE L1 -732 6741 6433 1 1287 7945 140 43 10 chr3 92139000 92141474 -67458309 - Lx3B LINE L1 -6 6967 4413 1 1287 263 297 82 34 chr3 92141546 92141839 -67457944 - L1MA6 LINE L1 -253 6047 5741 1 1287 315 49 0 0 chr3 92142302 92142343 -67457440 + (TG)n Simple_repeat Simple_repeat 2 42 0 2 160 1107 84 7 0 chr3 92143573 92143716 -67456067 + B1_Mus1 SINE Alu 5 148 0 2 1288 271 0 0 49 chr3 92143719 92143760 -67456023 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 2 1288 293 98 0 0 chr3 92143763 92143804 -67455979 + BC1_Mm scRNA scRNA 1 41 -111 2 1288 351 0 0 0 chr3 92143836 92143875 -67455908 + (GA)n Simple_repeat Simple_repeat 2 40 0 2 1288 651 60 0 0 chr3 92143875 92143959 -67455824 + (GGAAA)n Simple_repeat Simple_repeat 2 85 0 2 1288 309 316 52 54 chr3 92145420 92145800 -67453983 - L1MA4 LINE L1 -409 5891 5511 2 1288 356 0 0 22 chr3 92146513 92146558 -67453225 + (TTA)n Simple_repeat Simple_repeat 1 44 0 2 1288 1433 233 0 7 chr3 92146558 92146848 -67452935 - Lx4A LINE L1 -15 7043 6756 2 1288 1105 248 41 0 chr3 92146871 92147141 -67452642 - Lx5 LINE L1 -3 7047 6767 2 1288 3436 161 11 8 chr3 92147288 92148120 -67451663 - Lx2B LINE L1 -780 6220 5389 2 1288 307 349 123 19 chr3 92148282 92148437 -67451346 - B3A SINE B2 -20 178 8 2 1288 825 124 0 0 chr3 92148468 92148597 -67451186 + (TTCC)n Simple_repeat Simple_repeat 4 132 0 2 1288 1223 89 6 0 chr3 92148619 92148798 -67450985 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 2 1288 182 65 65 0 chr3 92148818 92148849 -67450934 + (TTTC)n Simple_repeat Simple_repeat 4 36 0 2 1288 1343 244 37 37 chr3 92148954 92149282 -67450501 + RLTR21 LTR ERVK 1 328 -1244 2 1288 5009 131 29 40 chr3 92149282 92150166 -67449617 + Lx2 LINE L1 6001 6875 -122 2 1288 3072 48 5 10 chr3 92150166 92150541 -67449242 + MTA_Mm LTR MaLR 1 375 -21 2 1288 3172 43 8 5 chr3 92150541 92150935 -67448848 + L1Md_F3 LINE L1 6190 6584 0 2 1288 3072 48 5 10 chr3 92150935 92150957 -67448826 + MTA_Mm LTR MaLR 376 396 0 2 1288 619 151 0 8 chr3 92150957 92151077 -67448706 + Lx2 LINE L1 6879 6997 0 2 1288 2252 226 13 51 chr3 92151078 92151688 -67448095 + RLTR21 LTR ERVK 361 947 -625 2 1288 4102 26 0 4 chr3 92151688 92152146 -67447637 + MT2_Mm LTR ERVL 1 458 -35 2 1288 4271 52 0 2 chr3 92152146 92152671 -67447112 + L1Md_F2 LINE L1 6047 6570 -12 2 1288 4102 26 0 4 chr3 92152671 92152707 -67447076 + MT2_Mm LTR ERVL 459 493 0 2 1288 472 186 0 78 chr3 92152707 92152832 -67446951 + RLTR21 LTR ERVK 943 1057 -515 2 1288 445 92 26 0 chr3 92152866 92152942 -67446841 + (TG)n Simple_repeat Simple_repeat 2 79 0 2 1288 882 198 21 55 chr3 92153130 92153365 -67446418 + Lx4A LINE L1 6820 7046 -12 2 1288 32 0 0 0 chr3 92153590 92153622 -67446161 + AT_rich Low_complexity Low_complexity 1 32 0 2 1288 21 0 0 0 chr3 92153627 92153648 -67446135 + AT_rich Low_complexity Low_complexity 1 21 0 2 1288 284 300 84 51 chr3 92154611 92154885 -67444898 - L1MA6 LINE L1 -277 6023 5741 2 1288 221 270 11 22 chr3 92155278 92155369 -67444414 + (TCTCTG)n Simple_repeat Simple_repeat 1 90 0 2 1288 7398 108 58 8 chr3 92157438 92158468 -67441315 - Lx3_Mus LINE L1 -16 6993 5912 2 1288 360 0 0 0 chr3 92158468 92158508 -67441275 + (TTAA)n Simple_repeat Simple_repeat 3 42 0 2 1288 7398 108 58 8 chr3 92158508 92158641 -67441142 - Lx3_Mus LINE L1 -1098 5911 5773 2 1288 479 312 46 56 chr3 92158947 92159389 -67440394 - L1MA4 LINE L1 -366 5925 5488 2 1288 1090 119 0 0 chr3 92160354 92160505 -67439278 - B2_Mm2 SINE B2 -41 154 4 2 1288 203 194 0 0 chr3 92160814 92160850 -67438933 + (TA)n Simple_repeat Simple_repeat 2 37 0 2 1288 252 343 29 41 chr3 92160957 92161203 -67438580 - L1M2 LINE L1 -663 5628 5386 2 1288 5787 32 0 1 chr3 92161232 92161916 -67437867 - L1Md_F3 LINE L1 -5 6579 5897 2 1288 3674 45 0 2 chr3 92161917 92162384 -67437399 + L1Md_F3 LINE L1 5345 5810 -73 2 1288 2375 159 174 85 chr3 92163305 92163939 -67435844 - RMER6C LTR ERVK 0 690 1 2 1288 203 220 20 0 chr3 92163959 92164009 -67435774 + (TA)n Simple_repeat Simple_repeat 1 51 0 2 1288 558 304 32 18 chr3 92164284 92164502 -67435281 - Lx8 LINE L1 -187 7286 7066 2 1288 237 277 57 25 chr3 92164601 92164723 -67435060 - Lx7 LINE L1 -792 6904 6779 2 1288 387 354 53 21 chr3 92164889 92165172 -67434611 - Lx8 LINE L1 -924 6549 6258 2 1288 5109 228 48 62 chr3 92165195 92166469 -67433314 + RMER12B LTR ERVK 1 1247 -157 2 1288 1051 40 34 23 chr3 92166469 92166646 -67433137 + (TCTCTG)n Simple_repeat Simple_repeat 2 180 0 2 1288 5109 228 48 62 chr3 92166646 92166795 -67432988 + RMER12B LTR ERVK 1248 1404 0 2 1288 249 83 0 0 chr3 92168200 92168236 -67431547 + (TG)n Simple_repeat Simple_repeat 1 36 0 2 1288 1563 238 29 7 chr3 92170512 92170922 -67428861 - MTC LTR MaLR -2 419 1 2 1288 310 314 110 30 chr3 92171228 92171592 -67428191 - L1M2 LINE L1 -520 5780 5388 2 1288 204 261 0 0 chr3 92171757 92171803 -67427980 + (TTA)n Simple_repeat Simple_repeat 1 46 0 2 1288 3255 225 35 8 chr3 92172704 92173426 -67426357 - Lx5 LINE L1 -7 7043 6303 2 1288 608 155 0 0 chr3 92173426 92173523 -67426260 - RLTR26 LTR ERVK -542 100 4 2 1288 715 246 41 16 chr3 92173528 92173722 -67426061 - Lx5 LINE L1 -754 6296 6098 2 1288 441 316 25 13 chr3 92173948 92174105 -67425678 - Lx8 LINE L1 -235 7238 7080 2 1288 698 357 31 45 chr3 92174238 92174995 -67424788 - Lx8 LINE L1 -821 6875 6127 2 1288 765 67 0 0 chr3 92175017 92175121 -67424662 - L1_Mus2 LINE L1 -524 6042 5939 2 1288 3924 91 2 0 chr3 92175121 92175649 -67424134 + L1_Mus2 LINE L1 6038 6566 0 2 1288 205 29 0 56 chr3 92176903 92176939 -67422844 + (TCTCTG)n Simple_repeat Simple_repeat 2 35 0 2 1288 280 103 0 33 chr3 92176941 92177001 -67422782 + (TG)n Simple_repeat Simple_repeat 1 58 0 2 1288 313 226 75 0 chr3 92179552 92179658 -67420125 - Lx5 LINE L1 0 7050 6937 2 1288 507 339 18 26 chr3 92179662 92180063 -67419720 - L1MA6 LINE L1 -412 5885 5488 2 1288 6011 76 2 7 chr3 92180391 92181238 -67418545 - L1Md_F2 LINE L1 -8 6574 5732 2 1288 24 0 0 0 chr3 92182221 92182245 -67417538 + AT_rich Low_complexity Low_complexity 1 24 0 2 1288 249 284 40 72 chr3 92183486 92183611 -67416172 + L1MDa LINE L1 302 422 -6211 2 1288 1859 306 67 33 chr3 92183889 92185375 -67414408 - Lx7 LINE L1 -498 7198 6044 2 1288 3441 171 115 37 chr3 92185376 92186210 -67413573 - L1_Mur2 LINE L1 -8 5869 4971 2 1288 3383 231 38 27 chr3 92186266 92187162 -67412621 + Lx5 LINE L1 6145 7050 0 2 1288 301 263 13 0 chr3 92187515 92187591 -67412192 - Lx8 LINE L1 -207 7266 7190 2 1288 275 272 60 26 chr3 92187588 92187705 -67412078 + Lx7 LINE L1 6793 6913 -783 2 1288 1294 329 46 33 chr3 92187735 92188456 -67411327 - Lx8 LINE L1 -699 6774 6045 2 1288 23 68 0 0 chr3 92188965 92189009 -67410774 + AT_rich Low_complexity Low_complexity 1 44 0 2 1288 551 201 114 34 chr3 92189753 92189928 -67409855 + B2_Mm2 SINE B2 2 190 -5 2 1288 1141 96 11 6 chr3 92191306 92191484 -67408299 + (CATATA)n Simple_repeat Simple_repeat 2 180 0 2 1288 31 0 0 0 chr3 92191504 92191535 -67408248 + AT_rich Low_complexity Low_complexity 1 31 0 2 1288 4405 106 3 17 chr3 92191536 92192180 -67407603 - Lx3A LINE L1 -4 6977 6343 2 1288 952 135 24 0 chr3 92192182 92192352 -67407431 - L1_Mus3 LINE L1 -6 6632 6459 2 1288 9416 98 16 108 chr3 92192350 92193167 -67406616 - Lx3A LINE L1 -632 6349 5537 2 1288 750 269 104 65 chr3 92193167 92193447 -67406336 - RLTR9A LTR ERVK 0 368 85 2 1288 2429 34 10 3 chr3 92193447 92193745 -67406038 - L1Md_F3 LINE L1 -2 6582 6283 2 1288 750 269 104 65 chr3 92193745 92193818 -67405965 - RLTR9A LTR ERVK -284 84 2 2 1288 9416 97 15 175 chr3 92193818 92195303 -67404480 - Lx3A LINE L1 -350 5536 4044 2 1288 550 326 71 27 chr3 92196152 92196489 -67403294 - Lx7 LINE L1 -788 6908 6557 2 1288 219 146 0 0 chr3 92196584 92196625 -67403158 + (TG)n Simple_repeat Simple_repeat 2 42 0 2 1288 374 326 33 5 chr3 92196625 92196903 -67402880 - L1M2 LINE L1 -662 5641 5328 2 1288 22 70 0 0 chr3 92196933 92196976 -67402807 + AT_rich Low_complexity Low_complexity 1 43 0 2 1288 1017 116 0 0 chr3 92197153 92197308 -67402475 + (TATATG)n Simple_repeat Simple_repeat 2 156 0 2 1288 802 314 54 81 chr3 92197494 92198121 -67401662 - Lx9 LINE L1 -452 7192 6583 2 1288 549 0 0 0 chr3 92198153 92198214 -67401569 + (CA)n Simple_repeat Simple_repeat 1 61 0 2 1288 518 323 25 12 chr3 92198390 92198550 -67401233 - B3A SINE B2 -34 164 3 2 1288 353 287 49 101 chr3 92198576 92199113 -67400670 - L1M2 LINE L1 -3090 3053 2520 2 1288 4217 208 63 16 chr3 92199446 92200402 -67399381 - Lx5 LINE L1 0 7050 6050 2 1288 627 214 0 53 chr3 92200765 92200898 -67398885 + MTC LTR MaLR 291 416 -5 2 1288 597 178 0 0 chr3 92201548 92201666 -67398117 + CT-rich Low_complexity Low_complexity 3 120 0 2 1288 1047 96 7 7 chr3 92201675 92201822 -67397961 - B1_Mm SINE Alu 0 147 1 2 1288 8014 90 4 7 chr3 92203227 92205138 -67394645 + L1_Mus1 LINE L1 4659 6566 -1 2 1288 279 0 0 0 chr3 92205143 92205174 -67394609 + (TC)n Simple_repeat Simple_repeat 2 32 0 2 1288 461 32 16 0 chr3 92205174 92205236 -67394547 + (TA)n Simple_repeat Simple_repeat 1 64 0 2 1288 1755 217 17 3 chr3 92205291 92205638 -67394145 - MTC LTR MaLR -69 352 1 2 1288 1404 91 9 13 chr3 92205724 92205948 -67393835 + L1_Mus3 LINE L1 6413 6635 -3 2 1288 421 295 46 60 chr3 92206219 92206434 -67393349 - L1MA6 LINE L1 -412 5885 5675 2 1288 1583 103 4 27 chr3 92206434 92206693 -67393090 - L1_Mus3 LINE L1 0 6638 6386 2 1288 421 290 55 70 chr3 92206693 92206983 -67392800 - L1MA6 LINE L1 -626 5674 5387 2 1288 1086 103 0 0 chr3 92207264 92207410 -67392373 + B1_Mm SINE Alu 1 146 -1 2 1288 626 327 37 22 chr3 92208324 92208596 -67391187 - Lx8 LINE L1 -93 7380 7105 2 1288 720 340 58 37 chr3 92208722 92209241 -67390542 - Lx8 LINE L1 -560 6913 6384 2 1288 837 0 0 0 chr3 92210120 92210213 -67389570 + (TTCTC)n Simple_repeat Simple_repeat 3 95 0 2 1288 180 111 0 0 chr3 92210215 92210242 -67389541 + (TTCC)n Simple_repeat Simple_repeat 1 27 0 2 1288 636 50 0 0 chr3 92210255 92210335 -67389448 + (TTTC)n Simple_repeat Simple_repeat 3 82 0 2 1288 215 31 31 0 chr3 92210384 92210416 -67389367 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 2 1288 340 106 0 0 chr3 92211002 92211049 -67388734 - HAL1-3A_ME LINE L1 -835 2023 1977 2 1288 195 129 0 0 chr3 92211098 92211129 -67388654 + (TG)n Simple_repeat Simple_repeat 2 32 0 2 1288 263 279 16 0 chr3 92213209 92213270 -67386513 + RLTR25B LTR ERVK 1 62 -966 2 1288 22 56 0 0 chr3 92214126 92214162 -67385621 + AT_rich Low_complexity Low_complexity 1 36 0 2 1288 1258 227 131 8 chr3 92214518 92214891 -67384892 - MTC LTR MaLR -2 419 1 2 1288 2334 225 49 57 chr3 92215480 92216116 -67383667 - Lx5 LINE L1 0 7050 6420 2 1288 476 310 52 0 chr3 92217378 92217533 -67382250 - Lx8 LINE L1 -204 7269 7107 2 1288 1038 348 37 56 chr3 92217644 92218464 -67381319 - Lx8 LINE L1 -541 6932 6129 2 1288 2327 81 62 0 chr3 92218470 92218791 -67380992 - L1_Mus1 LINE L1 -1 6566 6226 3 1288 438 20 0 0 chr3 92219361 92219412 -67380371 + (TC)n Simple_repeat Simple_repeat 2 52 0 3 1288 923 149 0 0 chr3 92219493 92219647 -67380136 - Lx2 LINE L1 -743 6254 6101 3 1288 4639 119 11 32 chr3 92219647 92220394 -67379389 + Lx2 LINE L1 6255 6985 -12 3 1288 207 0 0 0 chr3 92220975 92220998 -67378785 + (TCTG)n Simple_repeat Simple_repeat 2 24 0 3 1288 984 119 0 0 chr3 92221017 92221194 -67378589 + (TC)n Simple_repeat Simple_repeat 2 178 0 3 1288 279 54 0 0 chr3 92221194 92221230 -67378553 + (TG)n Simple_repeat Simple_repeat 2 38 0 3 1288 277 327 44 36 chr3 92223754 92224144 -67375639 - L1M1 LINE L1 -417 5883 5489 3 1288 405 0 0 0 chr3 92226705 92226750 -67373033 + (TG)n Simple_repeat Simple_repeat 2 46 0 3 1288 995 276 54 44 chr3 92227126 92227629 -67372154 - L1_Mur3 LINE L1 -1165 4715 4208 3 1288 628 271 27 0 chr3 92227737 92227999 -67371784 - L1_Mur3 LINE L1 -2189 3691 3423 3 1288 2357 89 60 0 chr3 92227998 92228378 -67371405 - Lx3_Mus LINE L1 -516 6493 6091 3 1288 556 208 138 36 chr3 92228379 92228603 -67371180 - L1_Mur3 LINE L1 -2858 3022 2776 3 1288 474 233 37 58 chr3 92228591 92228662 -67371121 - L1_Mur3 LINE L1 -4120 1760 1685 3 1288 183 0 0 119 chr3 92228662 92228704 -67371079 + (TTTA)n Simple_repeat Simple_repeat 1 37 0 3 1288 474 233 37 58 chr3 92228704 92228823 -67370960 - L1_Mur3 LINE L1 -4196 1684 1574 3 1288 3372 258 51 32 chr3 92228814 92230256 -67369527 - L1_Mur3 LINE L1 -3110 2770 1301 3 1288 1327 229 34 16 chr3 92231524 92231951 -67367832 - Lx9 LINE L1 -1683 5961 5492 3 1288 306 0 0 0 chr3 92231953 92231987 -67367796 + (T)n Simple_repeat Simple_repeat 1 34 0 3 1288 375 239 55 76 chr3 92233348 92233493 -67366290 - Lx9 LINE L1 -347 5500 5359 3 1288 1717 304 22 22 chr3 92233501 92234137 -67365646 + Lx9 LINE L1 6415 7050 -594 3 1288 471 321 46 36 chr3 92234244 92234438 -67365345 - Lx8 LINE L1 -199 7274 7079 3 1288 1206 339 60 26 chr3 92234536 92235333 -67364450 - Lx8 LINE L1 -562 6911 6088 3 1288 36 23 0 0 chr3 92235842 92235885 -67363898 + AT_rich Low_complexity Low_complexity 1 43 0 3 1288 727 291 138 19 chr3 92237910 92238229 -67361554 - ORR1E LTR MaLR 0 359 3 3 1288 21 0 0 0 chr3 92238283 92238304 -67361479 + AT_rich Low_complexity Low_complexity 1 21 0 3 1288 666 157 19 0 chr3 92240023 92240182 -67359601 + (TG)n Simple_repeat Simple_repeat 2 163 0 3 1288 342 0 0 0 chr3 92241656 92241694 -67358089 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 3 1288 884 86 0 0 chr3 92241694 92241811 -67357972 - B1_Mus1 SINE Alu -9 139 23 3 1288 222 271 94 0 chr3 92244493 92244578 -67355205 - L2a LINE L2 0 3426 3334 3 1288 27 0 0 0 chr3 92244614 92244641 -67355142 + AT_rich Low_complexity Low_complexity 1 27 0 3 1288 629 114 0 20 chr3 92245046 92245144 -67354639 - BC1_Mm scRNA scRNA -48 104 9 3 1288 640 317 55 19 chr3 92245692 92246071 -67353712 + Lx7 LINE L1 5876 6268 -1428 3 1288 279 0 0 0 chr3 92246081 92246112 -67353671 + (CA)n Simple_repeat Simple_repeat 2 32 0 3 1288 327 298 0 103 chr3 92246140 92246286 -67353497 + Lx7 LINE L1 7128 7258 -438 3 1288 245 250 15 45 chr3 92246367 92246434 -67353349 + RLTR28 LTR ERVL 431 495 -29 3 1288 426 39 0 0 chr3 92246448 92246500 -67353283 + (TATG)n Simple_repeat Simple_repeat 2 53 0 3 1288 4463 52 0 0 chr3 92246684 92247227 -67352556 + L1Md_F2 LINE L1 6038 6580 -2 3 1288 572 315 139 65 chr3 92247250 92247681 -67352102 - L1MDa LINE L1 -5502 1131 669 3 1288 624 14 0 0 chr3 92248056 92248129 -67351654 + (TCTA)n Simple_repeat Simple_repeat 2 74 0 3 1288 2152 197 59 61 chr3 92248469 92248778 -67351005 + RLTR11A2 LTR ERVK 1 325 -202 3 1288 1066 97 16 33 chr3 92248778 92248960 -67350823 + L1_Mus3 LINE L1 6444 6622 -16 3 1288 2152 197 59 61 chr3 92248960 92249142 -67350641 + RLTR11A2 LTR ERVK 326 491 -36 3 1288 221 0 0 33 chr3 92249505 92249535 -67350248 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 3 1288 239 260 0 64 chr3 92249618 92249677 -67350106 + MIRc SINE MIR 100 154 -114 3 1288 2063 164 77 0 chr3 92249677 92250043 -67349740 + ORR1B1 LTR MaLR 1 394 0 3 1288 239 260 0 64 chr3 92250043 92250061 -67349722 + MIRc SINE MIR 155 172 -96 3 1288 1858 290 40 12 chr3 92250441 92251260 -67348523 - Lx6 LINE L1 -1 7459 6457 3 1288 5743 110 13 0 chr3 92251264 92252387 -67347396 - L1VL4 LINE L1 -2340 1219 84 3 1288 2343 115 0 6 chr3 92252401 92252743 -67347040 + L1_Mus4 LINE L1 6290 6629 -7 3 1288 2212 187 67 28 chr3 92252832 92253372 -67346411 + RLTR31_Mm LTR ERVK 1 561 0 3 1288 873 295 69 71 chr3 92253588 92253938 -67345845 - ORR1E LTR MaLR -2 357 9 3 1288 301 334 25 25 chr3 92254085 92254244 -67345539 + L1M2 LINE L1 5669 5824 -476 3 1288 444 19 0 0 chr3 92254560 92254613 -67345170 + (TC)n Simple_repeat Simple_repeat 1 53 0 3 1288 548 53 0 13 chr3 92254613 92254689 -67345094 + (CA)n Simple_repeat Simple_repeat 1 76 0 3 1288 708 286 26 0 chr3 92254708 92254862 -67344921 - RSINE1 SINE B4 -7 158 1 3 1288 243 0 0 0 chr3 92254863 92254890 -67344893 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 3 1288 216 0 0 0 chr3 92254956 92254980 -67344803 + (GA)n Simple_repeat Simple_repeat 1 24 0 3 1288 4168 220 65 47 chr3 92255648 92256953 -67342830 - Lx2 LINE L1 0 6997 5669 3 1288 457 311 32 32 chr3 92257352 92257478 -67342305 + RSINE1 SINE B4 36 161 -4 3 1288 5721 138 23 16 chr3 92257524 92258478 -67341305 + Lx3B LINE L1 6008 6968 -5 3 1288 351 0 0 0 chr3 92258484 92258523 -67341260 + (TAA)n Simple_repeat Simple_repeat 1 39 0 3 1288 34 55 0 0 chr3 92258951 92259006 -67340777 + AT_rich Low_complexity Low_complexity 1 55 0 3 1288 2680 56 0 3 chr3 92261607 92261966 -67337817 + L1_Mus1 LINE L1 5694 6051 -516 3 1288 2842 62 37 19 chr3 92261968 92262377 -67337406 + L1_Mus1 LINE L1 6176 6567 0 3 1288 387 286 52 11 chr3 92263144 92263335 -67336448 - L1MA6 LINE L1 -4 6296 6098 3 1288 543 290 98 4 chr3 92263364 92263589 -67336194 - L1MA6 LINE L1 -293 6007 5762 3 1288 1434 266 133 32 chr3 92263591 92264593 -67335190 - L1M4c LINE L1 -584 5955 4863 3 1288 2131 61 35 18 chr3 92264593 92264878 -67334905 - L1_Mus1 LINE L1 -1 6566 6277 3 1288 1434 260 118 36 chr3 92264878 92265025 -67334758 - L1M4c LINE L1 -1517 4862 4678 3 1288 3732 166 72 6 chr3 92265025 92265734 -67334049 - RMER6A LTR ERVK 0 756 1 3 1288 1434 260 118 36 chr3 92265734 92265892 -67333891 - L1M4c LINE L1 -1702 4677 4506 3 1288 580 268 30 45 chr3 92265954 92266153 -67333630 - B3A SINE B2 0 198 3 3 1288 835 319 109 70 chr3 92266478 92266890 -67332893 - MER77 LTR ERVL -82 525 98 3 1288 975 168 42 0 chr3 92267093 92267283 -67332500 - Lx2 LINE L1 -33 6964 6767 3 1288 1261 148 0 0 chr3 92267285 92267487 -67332296 - Lx2 LINE L1 -409 6588 6387 3 1288 331 207 11 22 chr3 92267488 92267577 -67332206 - ORR1B1-int LTR MaLR -71 1438 1351 3 1288 5785 112 12 78 chr3 92267615 92268723 -67331060 - L1_Mm LINE L1 -2007 3876 2842 3 1288 356 338 132 44 chr3 92268723 92268787 -67330996 - L1M4c LINE L1 -5884 500 441 3 1288 3466 59 0 7 chr3 92268787 92269231 -67330552 - L1Md_F2 LINE L1 -2 6580 6140 3 1288 356 338 132 44 chr3 92269231 92269553 -67330230 - L1M4c LINE L1 -5944 440 80 3 1288 257 282 79 28 chr3 92269800 92270015 -67329768 + L1M4c LINE L1 2173 2398 -3986 3 1288 333 317 86 32 chr3 92270031 92270359 -67329424 + L1M4c LINE L1 2440 2780 -3602 3 1288 243 88 0 0 chr3 92271249 92271283 -67328500 + (CA)n Simple_repeat Simple_repeat 2 35 0 3 1288 195 241 22 22 chr3 92271703 92271792 -67327991 + GA-rich Low_complexity Low_complexity 3 91 0 3 1288 297 270 13 13 chr3 92272333 92272408 -67327375 + CT-rich Low_complexity Low_complexity 1 75 0 3 1288 282 384 64 43 chr3 92273044 92273278 -67326505 + LTR16E2 LTR ERVL 303 541 -27 3 1288 4671 114 23 23 chr3 92273498 92273981 -67325802 - L1_Mur1 LINE L1 -211 5675 5192 3 1288 2332 92 89 6 chr3 92273981 92274318 -67325465 + RLTR8 LTR ERVK 1 365 0 3 1288 4671 114 23 23 chr3 92274318 92274649 -67325134 - L1_Mur1 LINE L1 -695 5191 4861 3 2 8408 101 11 31 chr3 92274641 92275981 -67323802 + Lx3B LINE L1 5661 6973 0 3 1289 203 32 65 0 chr3 92275985 92276016 -67323767 + (TAAA)n Simple_repeat Simple_repeat 3 35 0 3 1289 1110 288 67 41 chr3 92276253 92276772 -67323011 - Lx6 LINE L1 -27 7433 6507 3 1289 1170 101 6 6 chr3 92276839 92276850 -67322933 - B2_Mm2 SINE B2 -26 169 158 3 1289 333 0 0 0 chr3 92276850 92276887 -67322896 + (TTA)n Simple_repeat Simple_repeat 3 39 0 3 1289 1170 101 6 6 chr3 92276887 92277044 -67322739 - B2_Mm2 SINE B2 -38 157 1 3 1289 184 30 29 29 chr3 92277072 92277106 -67322677 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 3 1289 7393 67 0 4 chr3 92277591 92278637 -67321146 - L1_Mus2 LINE L1 -1 6565 5524 3 1289 3736 81 9 43 chr3 92279005 92279537 -67320246 + L1_Mus2 LINE L1 6050 6563 -3 3 1289 278 195 92 0 chr3 92280227 92280314 -67319469 - Lx9 LINE L1 -6 7638 7544 3 1289 715 325 37 7 chr3 92280360 92280630 -67319153 + B4A SINE B4 1 278 -14 3 1289 195 42 0 0 chr3 92280701 92280725 -67319058 + (TAAA)n Simple_repeat Simple_repeat 3 26 0 3 1289 425 282 41 5 chr3 92280904 92281125 -67318658 + L1_Mur3 LINE L1 1471 1699 -4181 3 1289 409 307 31 5 chr3 92281277 92281470 -67318313 + L1_Mur3 LINE L1 2075 2272 -3608 3 1289 630 237 202 0 chr3 92282680 92282853 -67316930 + B3 SINE B2 2 209 -7 3 1289 1151 82 0 0 chr3 92283681 92283828 -67315955 + B1_Mm SINE Alu 1 147 0 3 1289 311 0 0 25 chr3 92283831 92283871 -67315912 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 3 1289 841 201 79 26 chr3 92284601 92284790 -67314993 + B3 SINE B2 2 200 -16 3 1289 978 9 0 0 chr3 92285419 92285530 -67314253 + (TG)n Simple_repeat Simple_repeat 2 112 0 3 1289 315 0 0 0 chr3 92285716 92285751 -67314032 + (GA)n Simple_repeat Simple_repeat 2 36 0 3 1289 774 50 0 0 chr3 92285751 92285850 -67313933 + (GGGGA)n Simple_repeat Simple_repeat 4 102 0 3 1289 369 62 0 0 chr3 92287678 92287726 -67312057 + (CA)n Simple_repeat Simple_repeat 2 49 0 3 1289 279 0 0 0 chr3 92290879 92290910 -67308873 + (TG)n Simple_repeat Simple_repeat 2 32 0 3 1289 781 207 0 0 chr3 92290911 92291051 -67308732 - B2_Mm2 SINE B2 -55 140 1 3 1289 627 299 20 49 chr3 92291404 92291608 -67308175 - B3A SINE B2 0 198 1 3 1289 2873 191 80 31 chr3 92291614 92292329 -67307454 - Lx2B LINE L1 -494 6506 5757 3 1289 1973 192 0 3 chr3 92292327 92292688 -67307095 + Lx2B LINE L1 6493 6852 -148 3 1289 937 95 7 7 chr3 92293263 92293411 -67306372 + (GGAA)n Simple_repeat Simple_repeat 4 151 0 3 1289 889 226 42 38 chr3 92293461 92293673 -67306110 - B3 SINE B2 0 216 4 3 1289 582 278 86 19 chr3 92293758 92293967 -67305816 - Lx8 LINE L1 -29 7444 7222 3 1289 321 150 0 62 chr3 92294394 92294458 -67305325 + B1_Mus1 SINE Alu 1 60 -88 3 1289 395 0 0 163 chr3 92294460 92294675 -67305108 + (CAGAG)n Simple_repeat Simple_repeat 1 180 0 3 1289 216 0 316 0 chr3 92294595 92294709 -67305074 + (CAGG)n Simple_repeat Simple_repeat 2 151 0 4 1289 580 154 19 0 chr3 92294714 92294818 -67304965 + B1_Mus2 SINE Alu 42 147 0 4 1289 209 302 81 69 chr3 92295946 92296106 -67303677 + MIRb SINE MIR 42 203 -65 4 1289 291 314 135 16 chr3 92297004 92297130 -67302653 + MIRb SINE MIR 118 258 -10 4 1289 584 244 25 43 chr3 92298239 92298429 -67301354 - MER34A LTR ERV1 -14 573 381 4 1289 873 288 126 41 chr3 92298429 92298714 -67301069 + L1MA7 LINE L1 4645 4920 -1223 4 1289 378 0 0 0 chr3 92298714 92298756 -67301027 + (TAA)n Simple_repeat Simple_repeat 2 43 0 4 1289 978 283 125 22 chr3 92298756 92299573 -67300210 + L1MA7 LINE L1 4921 5854 -437 4 1289 251 274 28 0 chr3 92299919 92300025 -67299758 + L1MB8 LINE L1 6064 6172 -6 4 1289 417 254 93 60 chr3 92300121 92300272 -67299511 - MER34A LTR ERV1 -348 223 68 4 1289 215 240 20 0 chr3 92301839 92301889 -67297894 + (CATA)n Simple_repeat Simple_repeat 4 54 0 4 1289 851 234 24 38 chr3 92302085 92302298 -67297485 - B3 SINE B2 -6 210 1 4 1289 702 291 11 11 chr3 92302707 92302898 -67296885 + B3A SINE B2 1 191 -7 4 1289 2940 70 0 18 chr3 92303089 92303483 -67296300 - L1_Mus2 LINE L1 -3 6563 6177 4 1289 225 0 0 0 chr3 92305835 92305860 -67293923 + (A)n Simple_repeat Simple_repeat 1 25 0 4 1289 883 223 103 0 chr3 92305971 92306155 -67293628 - B3 SINE B2 -8 208 6 4 1289 495 0 0 0 chr3 92307015 92307070 -67292713 + (CA)n Simple_repeat Simple_repeat 2 56 0 4 1289 281 243 195 18 chr3 92307257 92307370 -67292413 - MIRc SINE MIR -127 141 9 4 1289 1131 8 0 0 chr3 92307779 92307907 -67291876 + (TCTCCC)n Simple_repeat Simple_repeat 2 129 0 4 1289 327 253 32 21 chr3 92308261 92308354 -67291429 - MIRb SINE MIR -111 157 64 4 1289 201 309 36 36 chr3 92310159 92310243 -67289540 + MIRm SINE MIR 87 170 -106 4 1289 815 78 0 8 chr3 92310651 92310768 -67289015 + (TCTCC)n Simple_repeat Simple_repeat 5 120 0 4 1289 279 303 0 0 chr3 92310782 92310848 -67288935 - ID4 SINE ID -16 67 2 4 1289 579 309 38 19 chr3 92311225 92311436 -67288347 - B3 SINE B2 -1 215 1 4 1289 1089 272 53 23 chr3 92312084 92312426 -67287357 - MER31A LTR ERV1 -8 477 126 4 1289 685 266 6 31 chr3 92312479 92312642 -67287141 + RSINE1 SINE B4 3 161 -4 4 1289 33 25 0 0 chr3 92312733 92312773 -67287010 + AT_rich Low_complexity Low_complexity 1 40 0 4 1289 320 234 62 21 chr3 92312790 92312886 -67286897 - MER31A LTR ERV1 -360 125 26 4 1289 1020 139 47 16 chr3 92313435 92313625 -67286158 - Lx3_Mus LINE L1 0 7009 6814 4 1289 22 0 0 0 chr3 92314135 92314157 -67285626 + AT_rich Low_complexity Low_complexity 1 22 0 4 1289 460 288 12 18 chr3 92315299 92315462 -67284321 - Lx9 LINE L1 -378 7266 7105 4 1289 477 281 158 64 chr3 92315838 92316040 -67283743 - B4A SINE B4 -71 221 1 4 1289 405 0 0 0 chr3 92316108 92316153 -67283630 + (CA)n Simple_repeat Simple_repeat 1 45 0 4 1289 360 0 0 0 chr3 92316516 92316556 -67283227 + (CA)n Simple_repeat Simple_repeat 1 40 0 4 1289 603 0 0 0 chr3 92316556 92316622 -67283161 + (GA)n Simple_repeat Simple_repeat 2 68 0 4 1289 245 200 151 127 chr3 92316799 92316911 -67282872 - L1MA8 LINE L1 -27 6264 6164 4 1289 309 26 0 0 chr3 92316911 92316949 -67282834 + (TG)n Simple_repeat Simple_repeat 1 38 0 4 1289 245 200 151 127 chr3 92316949 92317002 -67282781 - L1MA8 LINE L1 -128 6163 6096 4 1289 351 0 0 0 chr3 92317607 92317646 -67282137 + (AAATG)n Simple_repeat Simple_repeat 3 41 0 4 1289 802 310 39 26 chr3 92318352 92318830 -67280953 - L1M2 LINE L1 -3200 2946 2472 4 1289 279 0 0 0 chr3 92318894 92318925 -67280858 + (TG)n Simple_repeat Simple_repeat 1 31 0 4 1289 493 355 22 0 chr3 92318929 92319067 -67280716 - RSINE1 SINE B4 -22 143 3 4 1289 231 36 0 0 chr3 92319096 92319124 -67280659 + (TTA)n Simple_repeat Simple_repeat 2 29 0 4 1289 387 175 52 0 chr3 92319126 92319223 -67280560 - Lx9 LINE L1 -7 7637 7536 4 1289 214 147 0 0 chr3 92319223 92319257 -67280526 + (TCC)n Simple_repeat Simple_repeat 2 35 0 4 1289 519 244 8 39 chr3 92319259 92319387 -67280396 - B1_Mur2 SINE Alu -1 148 25 4 1289 363 23 0 0 chr3 92319394 92319438 -67280345 + (TG)n Simple_repeat Simple_repeat 2 45 0 4 1289 491 247 57 11 chr3 92319438 92319614 -67280169 - Lx9 LINE L1 -180 7464 7281 4 1289 472 290 133 28 chr3 92319737 92320318 -67279465 + L1M2 LINE L1 4055 4703 -1440 4 1289 291 224 98 0 chr3 92320504 92320601 -67279182 + L1M2 LINE L1 4674 4785 -1358 4 1289 641 280 73 18 chr3 92320612 92321171 -67278612 + L1M2 LINE L1 4866 5430 -450 4 1289 1209 101 0 6 chr3 92321271 92321440 -67278343 + B2_Mm2 SINE B2 3 170 -25 4 1289 773 116 204 0 chr3 92321439 92321586 -67278197 + B2_Mm2 SINE B2 11 187 -8 4 1289 696 253 28 31 chr3 92321596 92321886 -67277897 - L1_Rod LINE L1 -462 5385 5097 4 1289 920 266 65 19 chr3 92321905 92322293 -67277490 + Lx9 LINE L1 5506 5945 -1699 4 1289 323 23 0 22 chr3 92322505 92322550 -67277233 + (TTTG)n Simple_repeat Simple_repeat 2 45 0 4 1289 1034 90 0 0 chr3 92322550 92322684 -67277099 - B1_Mus1 SINE Alu -13 135 2 4 1289 10069 105 20 4 chr3 92322712 92325103 -67274680 + L1_Mus3 LINE L1 4204 6633 -5 4 1289 964 188 0 21 chr3 92325993 92326183 -67273600 + RLTR18-int LTR ERVK 5165 5350 -11 4 1289 1055 227 50 43 chr3 92326187 92326506 -67273277 + RLTR18B LTR ERVK 1 281 -335 4 1289 21679 82 2 21 chr3 92326532 92330218 -67269565 - L1Md_F2 LINE L1 0 6582 2912 4 1289 2603 69 23 0 chr3 92330218 92330568 -67269215 - L1Md_F2 LINE L1 0 6582 6225 4 1289 19058 181 6 106 chr3 92330568 92333717 -67266066 - L1Md_F2 LINE L1 -2959 2918 446 4 1289 818 279 21 46 chr3 92333729 92333969 -67265814 + RLTR18B LTR ERVK 278 511 -1 4 1289 540 30 0 0 chr3 92333982 92334048 -67265735 + (CA)n Simple_repeat Simple_repeat 2 67 0 4 1289 519 233 0 87 chr3 92335369 92335496 -67264287 + B3A SINE B2 1 116 -82 4 1289 452 240 58 0 chr3 92335567 92335688 -67264095 - B3 SINE B2 0 216 89 4 1289 295 250 15 0 chr3 92335683 92335751 -67264032 - B2_Mm2 SINE B2 -120 75 7 4 1289 219 36 0 0 chr3 92336235 92336263 -67263520 + (TG)n Simple_repeat Simple_repeat 2 29 0 4 1289 606 73 18 9 chr3 92337176 92337287 -67262496 + (TG)n Simple_repeat Simple_repeat 1 112 0 4 1289 192 221 11 34 chr3 92337408 92337497 -67262286 + GA-rich Low_complexity Low_complexity 1 87 0 4 1289 1686 48 9 5 chr3 92339295 92339506 -67260277 - L1Md_F3 LINE L1 0 6584 6373 4 1289 220 313 59 25 chr3 92339605 92339723 -67260060 + MIRb SINE MIR 74 195 -73 4 1289 240 309 0 11 chr3 92340046 92340141 -67259642 + Lx8 LINE L1 6973 7066 -407 4 1289 354 224 0 0 chr3 92340494 92340579 -67259204 + C-rich Low_complexity Low_complexity 2 86 0 4 1289 329 321 74 30 chr3 92340587 92340722 -67259061 - HAL1-3A_ME LINE L1 -434 2424 2284 4 1289 228 35 0 0 chr3 92340800 92340829 -67258954 + (TCTCTG)n Simple_repeat Simple_repeat 2 30 0 4 1289 21 0 0 0 chr3 92340865 92340886 -67258897 + AT_rich Low_complexity Low_complexity 1 21 0 4 1289 355 106 30 0 chr3 92341028 92341094 -67258689 + L1MA7 LINE L1 6221 6288 -3 4 1289 684 179 74 20 chr3 92341182 92341196 -67258587 - Lx3C LINE L1 -1 6975 6964 4 1289 284 48 24 0 chr3 92341196 92341238 -67258545 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 4 1289 684 179 74 20 chr3 92341238 92341371 -67258412 - Lx3C LINE L1 -13 6963 6820 4 1289 513 0 0 0 chr3 92345334 92345391 -67254392 + (TC)n Simple_repeat Simple_repeat 2 58 0 4 1289 441 0 0 0 chr3 92345391 92345439 -67254344 + (TG)n Simple_repeat Simple_repeat 2 50 0 4 1289 886 304 32 15 chr3 92345465 92345805 -67253978 + MER47A DNA MER2_type 21 366 0 4 1289 397 307 49 14 chr3 92347355 92347497 -67252286 - B1F SINE Alu -1 148 2 4 1289 939 265 5 14 chr3 92347560 92347774 -67252009 - B3 SINE B2 -3 213 2 4 1289 211 171 66 0 chr3 92348252 92348328 -67251455 + (TA)n Simple_repeat Simple_repeat 1 81 0 4 1289 484 215 197 84 chr3 92349175 92349353 -67250430 - B3A SINE B2 0 198 1 4 1289 186 71 0 0 chr3 92350395 92350423 -67249360 + (CA)n Simple_repeat Simple_repeat 2 29 0 4 1289 42203 9 0 2 chr3 92350816 92358211 -67241572 - L1Md_A LINE L1 0 6582 1 4 1289 976 269 136 56 chr3 92358821 92359518 -67240265 - L1MB1 LINE L1 0 6168 5416 4 1289 831 142 0 0 chr3 92359530 92359657 -67240126 - B1_Mus1 SINE Alu -8 140 14 4 1289 369 0 0 0 chr3 92359663 92359704 -67240079 + (TTTA)n Simple_repeat Simple_repeat 3 43 0 4 1289 425 246 7 65 chr3 92359834 92359973 -67239810 - L1MB1 LINE L1 -729 5439 5309 4 1289 369 0 0 0 chr3 92359974 92360015 -67239768 + (CATA)n Simple_repeat Simple_repeat 4 44 0 4 1289 363 23 0 0 chr3 92360074 92360118 -67239665 + (CA)n Simple_repeat Simple_repeat 2 45 0 4 1289 284 166 221 34 chr3 92360250 92360386 -67239397 - L1MB1 LINE L1 -830 5310 5157 4 1289 1397 259 80 56 chr3 92360385 92360725 -67239058 + L1M3 LINE L1 4462 4825 -1315 4 1289 450 0 0 0 chr3 92360725 92360775 -67239008 + (CA)n Simple_repeat Simple_repeat 2 51 0 4 1289 1397 259 80 56 chr3 92360775 92360846 -67238937 + L1M3 LINE L1 4826 4910 -1230 4 1289 1490 86 10 0 chr3 92360846 92361043 -67238740 + L1_Mus2 LINE L1 6368 6566 0 4 1289 1397 259 80 56 chr3 92361043 92361271 -67238512 + L1M3 LINE L1 4911 5116 -1024 4 1289 27 29 0 0 chr3 92361807 92361841 -67237942 + AT_rich Low_complexity Low_complexity 1 34 0 4 1289 7658 97 7 8 chr3 92362251 92363420 -67236363 + L1_Mus4 LINE L1 5470 6636 0 4 1289 423 0 0 0 chr3 92363452 92363499 -67236284 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 4 1289 1400 267 40 45 chr3 92363536 92363959 -67235824 + Lx8 LINE L1 6379 6799 -674 4 1289 191 36 0 35 chr3 92363959 92363988 -67235795 + (CAAAAA)n Simple_repeat Simple_repeat 2 29 0 4 1289 308 167 0 14 chr3 92364042 92364115 -67235668 + CT-rich Low_complexity Low_complexity 2 73 0 4 1289 228 259 121 24 chr3 92364364 92364447 -67235336 + MIR SINE MIR 33 123 -139 4 1289 246 280 56 0 chr3 92365498 92365605 -67234178 + L1M3e LINE L1 1864 1976 -5054 4 1289 5154 72 2 0 chr3 92365624 92366266 -67233517 + L1_Mus2 LINE L1 5811 6453 -113 4 1289 851 282 10 5 chr3 92366523 92366726 -67233057 - B3 SINE B2 -12 204 1 4 1289 180 0 0 0 chr3 92366828 92366848 -67232935 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 4 1289 252 0 0 0 chr3 92366848 92366876 -67232907 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 4 1289 189 347 72 2 chr3 92366966 92367092 -67232691 - MIRb SINE MIR -36 226 92 5 1289 28 0 0 0 chr3 92367299 92367327 -67232456 + AT_rich Low_complexity Low_complexity 1 28 0 5 1289 241 269 27 36 chr3 92367413 92367525 -67232258 - L1ME2z LINE L1 -175 6269 6159 5 1289 1028 67 45 0 chr3 92367577 92367711 -67232072 + L1_Mus2 LINE L1 6427 6566 0 5 1289 316 294 6 89 chr3 92367713 92367870 -67231913 + L1MEf LINE L1 1464 1607 -4593 5 1289 3712 116 4 15 chr3 92368295 92368822 -67230961 + L1_Mus3 LINE L1 6116 6636 -2 5 1289 520 306 52 84 chr3 92368875 92369148 -67230635 + L1M3e LINE L1 3077 3360 -3743 4 1289 586 0 0 0 chr3 92369148 92369215 -67230568 + L1Md_T LINE L1 6515 6581 -1 5 1289 520 306 52 84 chr3 92369215 92369502 -67230281 + L1M3e LINE L1 3361 3619 -3484 4 1289 1598 268 36 54 chr3 92369962 92370570 -67229213 + L1_Mur3 LINE L1 4863 5459 -421 5 1289 269 255 9 62 chr3 92370566 92370679 -67229104 - L1M4 LINE L1 -2602 3544 3438 5 1289 411 269 132 0 chr3 92370817 92370984 -67228799 - Lx9 LINE L1 -42 7602 7414 5 1289 603 259 172 12 chr3 92370977 92371384 -67228399 - L1M2 LINE L1 -2908 3235 2764 5 1289 732 270 127 81 chr3 92371388 92371735 -67228048 - Lx6 LINE L1 -4 7456 7094 5 1289 5940 89 5 0 chr3 92371759 92372568 -67227215 - L1_Mur1 LINE L1 -1041 4845 4033 5 1289 8898 98 34 17 chr3 92372552 92373865 -67225918 + Lx3_Mus LINE L1 5664 6999 -10 5 1289 1738 172 40 14 chr3 92373903 92374240 -67225543 + Lx4B LINE L1 6700 7045 -13 5 1289 471 35 0 0 chr3 92374240 92374297 -67225486 + (TAGA)n Simple_repeat Simple_repeat 4 60 0 5 1289 1738 172 40 14 chr3 92374297 92374308 -67225475 + Lx4B LINE L1 7046 7056 -2 5 1289 1236 75 0 13 chr3 92374575 92374724 -67225059 + B1_Mus2 SINE Alu 1 147 0 5 1289 333 0 0 0 chr3 92374726 92374763 -67225020 + (A)n Simple_repeat Simple_repeat 1 37 0 5 1289 204 349 0 0 chr3 92375915 92376044 -67223739 + (CTG)n Simple_repeat Simple_repeat 2 130 0 5 1289 528 257 3 3 chr3 92376166 92376458 -67223325 + (CTG)n Simple_repeat Simple_repeat 1 292 0 5 1289 249 33 0 0 chr3 92378469 92378499 -67221284 + (TTCC)n Simple_repeat Simple_repeat 3 32 0 5 1289 620 190 23 23 chr3 92378499 92378671 -67221112 + CT-rich Low_complexity Low_complexity 2 173 0 5 1289 537 16 0 0 chr3 92378680 92378742 -67221041 + (TTTC)n Simple_repeat Simple_repeat 1 62 0 5 1289 621 216 9 0 chr3 92378752 92378868 -67220915 - B1_Mus2 SINE Alu -8 139 23 5 1289 21 89 0 0 chr3 92379264 92379320 -67220463 + AT_rich Low_complexity Low_complexity 1 56 0 5 1289 720 64 0 0 chr3 92379892 92379986 -67219797 + (TTCC)n Simple_repeat Simple_repeat 3 96 0 5 1289 304 242 50 10 chr3 92379986 92380077 -67219706 - L1MEg LINE L1 -4132 1952 1858 5 1289 773 80 9 0 chr3 92380077 92380189 -67219594 - L1_Mus2 LINE L1 0 6566 6454 5 1289 469 291 43 43 chr3 92381342 92381482 -67218301 + ID_B1 SINE B4 84 223 -1 5 1289 644 130 0 9 chr3 92381484 92381578 -67218205 + (GGAA)n Simple_repeat Simple_repeat 2 94 0 5 1289 1261 58 17 0 chr3 92381578 92381752 -67218031 + (GAAA)n Simple_repeat Simple_repeat 4 180 0 5 1289 1042 119 5 6 chr3 92381752 92381952 -67217831 + (GGAA)n Simple_repeat Simple_repeat 1 199 0 5 1289 276 326 262 34 chr3 92384272 92385069 -67214714 - L2 LINE L2 -404 3015 2037 5 1289 317 224 606 47 chr3 92385085 92385272 -67214511 + L1MA9 LINE L1 5992 6283 -29 5 1289 903 313 84 35 chr3 92385340 92385684 -67214099 + MTE2a LTR MaLR 1 361 -18 5 1289 274 229 86 0 chr3 92385684 92385754 -67214029 + L1M5 LINE L1 5684 5759 -420 5 1289 1791 110 10 64 chr3 92385789 92385825 -67213958 - L1Md_F2 LINE L1 0 6582 6548 5 1289 1281 22 0 37 chr3 92385825 92386012 -67213771 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 5 1289 1791 110 10 64 chr3 92386012 92386287 -67213496 - L1Md_F2 LINE L1 -35 6547 6288 5 1289 23 0 0 0 chr3 92386555 92386578 -67213205 + AT_rich Low_complexity Low_complexity 1 23 0 5 1289 250 271 68 0 chr3 92387525 92387584 -67212199 + ID4_ SINE ID 1 63 -20 5 1289 322 0 0 0 chr3 92388559 92388603 -67211180 - L1_Mus2 LINE L1 0 6566 6523 5 1289 202 281 45 64 chr3 92388833 92388943 -67210840 - MIRb SINE MIR -43 219 112 5 1289 354 23 0 0 chr3 92389709 92389752 -67210031 + (TG)n Simple_repeat Simple_repeat 2 44 0 5 1289 369 0 0 0 chr3 92391014 92391055 -67208728 + (TG)n Simple_repeat Simple_repeat 1 41 0 5 1289 509 139 0 9 chr3 92391055 92391164 -67208619 + (GA)n Simple_repeat Simple_repeat 2 109 0 5 1289 204 125 0 0 chr3 92391208 92391240 -67208543 + (GA)n Simple_repeat Simple_repeat 1 32 0 5 1289 466 172 8 8 chr3 92391459 92391588 -67208195 + CT-rich Low_complexity Low_complexity 2 130 0 5 1289 708 12 0 0 chr3 92391746 92391827 -67207956 + (CA)n Simple_repeat Simple_repeat 1 81 0 5 1289 4496 181 43 78 chr3 92394151 92395200 -67204583 + RMER1B Other Other 50 1061 -5 5 1289 486 208 175 61 chr3 92395207 92395453 -67204330 - Lx7 LINE L1 0 7696 7423 5 1289 5228 212 102 30 chr3 92395469 92396344 -67203439 - Lx7 LINE L1 -593 7103 6161 5 1289 504 0 0 0 chr3 92396344 92396400 -67203383 + (TC)n Simple_repeat Simple_repeat 1 56 0 5 1289 9505 215 98 34 chr3 92396400 92397265 -67202518 - Lx7 LINE L1 -1536 6160 5232 5 1289 7413 115 29 19 chr3 92397265 92398424 -67201359 - Lx3B LINE L1 -4 6969 5799 5 1289 9505 219 90 41 chr3 92398424 92399696 -67200087 - Lx7 LINE L1 -649 5231 3930 5 1289 527 195 171 0 chr3 92399696 92399819 -67199964 - B1_Mur4 SINE Alu -6 144 1 5 1289 9505 219 90 41 chr3 92399819 92401001 -67198782 - Lx7 LINE L1 -1951 3929 2661 5 1289 342 0 0 0 chr3 92401001 92401039 -67198744 + (TG)n Simple_repeat Simple_repeat 2 39 0 5 1289 9505 252 130 34 chr3 92401039 92401410 -67198373 - Lx7 LINE L1 -3220 2660 1974 5 1289 270 56 0 0 chr3 92401410 92401446 -67198337 + (TTTTG)n Simple_repeat Simple_repeat 1 36 0 5 1289 7683 278 87 28 chr3 92401446 92402912 -67196871 - Lx7 LINE L1 -3904 1973 471 5 1289 25 75 0 0 chr3 92403137 92403190 -67196593 + AT_rich Low_complexity Low_complexity 1 53 0 5 1289 294 277 49 10 chr3 92405313 92405415 -67194368 + LTR41B LTR ERVL 643 748 -10 5 1289 25 75 0 0 chr3 92405474 92405527 -67194256 + AT_rich Low_complexity Low_complexity 1 53 0 5 161 1497 285 44 11 chr3 92405625 92406079 -67193704 + Lx6 LINE L1 6992 7460 0 5 1290 23 0 0 0 chr3 92406631 92406654 -67193129 + AT_rich Low_complexity Low_complexity 1 23 0 5 1290 322 329 64 34 chr3 92406715 92407011 -67192772 - Charlie14a DNA MER1_type -709 455 151 5 1290 1062 207 114 65 chr3 92407652 92408004 -67191779 - RMER13A LTR ERVK -394 466 98 5 1290 408 40 0 0 chr3 92408367 92408417 -67191366 + (CAG)n Simple_repeat Simple_repeat 1 50 0 5 1290 309 89 0 0 chr3 92411217 92411262 -67188521 + (CAGAGA)n Simple_repeat Simple_repeat 4 48 0 5 1290 881 126 6 0 chr3 92411263 92411438 -67188345 + (GA)n Simple_repeat Simple_repeat 2 177 0 5 1290 208 91 91 0 chr3 92412113 92412157 -67187626 + T-rich Low_complexity Low_complexity 3 50 0 5 1290 204 40 0 0 chr3 92412906 92412931 -67186852 + (CA)n Simple_repeat Simple_repeat 1 25 0 5 1290 787 239 11 6 chr3 92413068 92413249 -67186534 + B2_Mm2 SINE B2 2 183 -12 5 1290 214 95 0 45 chr3 92414269 92414313 -67185470 + (TA)n Simple_repeat Simple_repeat 1 42 0 5 1290 301 207 57 8 chr3 92414352 92414474 -67185309 + (TA)n Simple_repeat Simple_repeat 1 128 0 5 1290 28 0 0 0 chr3 92414502 92414530 -67185253 + AT_rich Low_complexity Low_complexity 1 28 0 5 1290 249 33 0 0 chr3 92415856 92415886 -67183897 + (CA)n Simple_repeat Simple_repeat 1 30 0 5 1290 603 0 0 0 chr3 92415888 92415955 -67183828 + (TA)n Simple_repeat Simple_repeat 2 68 0 5 1290 224 387 9 35 chr3 92416072 92416187 -67183596 + MER5A DNA MER1_type 51 162 -27 5 1290 373 360 58 16 chr3 92416830 92417019 -67182764 + MIR SINE MIR 32 228 -34 5 1290 243 0 0 0 chr3 92417033 92417060 -67182723 + (TAG)n Simple_repeat Simple_repeat 1 27 0 5 1290 253 352 14 14 chr3 92417062 92417134 -67182649 - PB1D10 SINE Alu -45 72 1 5 1290 1285 82 33 0 chr3 92417300 92417482 -67182301 + L1_Mus1 LINE L1 6380 6567 0 5 1290 7085 5 0 1 chr3 92417482 92418267 -67181516 - L1Md_T LINE L1 0 6582 5799 5 1290 1127 15 0 0 chr3 92418267 92418403 -67181380 + L1Md_T LINE L1 5777 5912 -670 5 1290 228 246 96 55 chr3 92418508 92418654 -67181129 - L1MA7 LINE L1 -16 6275 6124 5 1290 432 0 0 0 chr3 92418705 92418753 -67181030 + (TCTA)n Simple_repeat Simple_repeat 4 51 0 5 1290 204 125 0 0 chr3 92419061 92419093 -67180690 + (TATATG)n Simple_repeat Simple_repeat 1 32 0 5 1290 1087 104 0 0 chr3 92419505 92419649 -67180134 - B1_Mus2 SINE Alu -2 145 2 5 1290 6320 96 1 18 chr3 92420001 92421569 -67178214 + L1Md_A LINE L1 369 2126 -3757 5 1290 1162 40 0 0 chr3 92421569 92421717 -67178066 + L1Md_F2 LINE L1 6422 6569 -13 5 1290 716 0 12 0 chr3 92421723 92421807 -67177976 + (GAAAA)n Simple_repeat Simple_repeat 2 86 0 5 1290 22 0 0 0 chr3 92421906 92421928 -67177855 + AT_rich Low_complexity Low_complexity 1 22 0 5 1290 792 279 14 33 chr3 92421973 92422188 -67177595 - B3 SINE B2 -2 214 4 5 1290 487 321 16 10 chr3 92422215 92422407 -67177376 - B3A SINE B2 -5 193 1 5 1290 414 216 20 82 chr3 92423456 92423602 -67176181 - Lx9 LINE L1 -2 7642 7506 5 1290 432 37 0 0 chr3 92423603 92423657 -67176126 + (TG)n Simple_repeat Simple_repeat 2 55 0 5 1290 31 82 0 0 chr3 92423673 92423746 -67176037 + AT_rich Low_complexity Low_complexity 1 73 0 5 1290 186 43 0 0 chr3 92424450 92424473 -67175310 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 5 1290 252 0 0 0 chr3 92424861 92424889 -67174894 + (CATTT)n Simple_repeat Simple_repeat 5 32 0 5 1290 233 356 64 89 chr3 92425447 92425735 -67174048 + L2c LINE L2 3074 3378 -9 5 1290 3217 231 86 33 chr3 92427046 92427870 -67171913 + ORR1C2-int LTR MaLR 480 1347 -23 5 1290 1312 241 36 42 chr3 92427877 92428263 -67171520 + ORR1C2 LTR MaLR 1 384 0 5 1290 13132 67 2 0 chr3 92428509 92430299 -67169484 - L1Md_F2 LINE L1 -356 5527 3734 5 1290 553 44 0 0 chr3 92430297 92430365 -67169418 + L1Md_F2 LINE L1 5519 5586 -297 5 1290 8032 48 1 1 chr3 92430366 92431359 -67168424 + L1Md_F2 LINE L1 5588 6580 -2 5 1290 1128 116 28 6 chr3 92431390 92431572 -67168211 - B2_Mm2 SINE B2 -9 186 1 5 1290 233 193 119 34 chr3 92431587 92431705 -67168078 + L1M4b LINE L1 1622 1749 -5585 5 1290 543 31 0 0 chr3 92431709 92431774 -67168009 + (GAAAA)n Simple_repeat Simple_repeat 1 65 0 5 1290 468 0 0 0 chr3 92431824 92431876 -67167907 + (CA)n Simple_repeat Simple_repeat 1 52 0 5 1290 631 125 0 0 chr3 92432000 92432096 -67167687 - B2_Mm2 SINE B2 -99 96 1 6 1290 1236 89 25 59 chr3 92432131 92432333 -67167450 + B2_Mm2 SINE B2 1 195 0 6 1290 1974 176 36 0 chr3 92432499 92432862 -67166921 + ORR1C1 LTR MaLR 1 376 -2 6 1290 513 335 56 12 chr3 92433104 92433264 -67166519 + B3A SINE B2 31 197 -1 6 1290 233 246 27 14 chr3 92433329 92433403 -67166380 + L1M4b LINE L1 5795 5869 -1137 5 1290 253 258 0 0 chr3 92433757 92433823 -67165960 + L1_Rod LINE L1 5159 5224 -623 6 1290 488 237 76 0 chr3 92433833 92433964 -67165819 - MTD LTR MaLR -3 416 276 6 1290 288 0 0 0 chr3 92433965 92433997 -67165786 + (TG)n Simple_repeat Simple_repeat 2 33 0 6 1290 3049 224 67 5 chr3 92434000 92434772 -67165011 - Lx9 LINE L1 -179 7465 6646 6 1290 472 270 31 66 chr3 92434787 92435013 -67164770 - Lx9 LINE L1 -1547 6097 5880 6 1290 296 294 167 0 chr3 92436739 92436865 -67162918 + B1F SINE Alu 1 147 -2 6 1290 241 337 144 41 chr3 92437420 92437906 -67161877 - Tigger5 DNA MER2_type -873 1533 998 6 1290 730 276 31 0 chr3 92438314 92438477 -67161306 + B3 SINE B2 40 207 -9 6 1290 855 237 39 13 chr3 92438490 92438721 -67161062 + L1_Mur3 LINE L1 3704 3940 -1940 6 1290 5297 218 44 42 chr3 92438724 92439929 -67159854 + Lx9 LINE L1 5006 6315 -1329 6 1290 270 0 0 0 chr3 92439929 92439959 -67159824 + (TA)n Simple_repeat Simple_repeat 2 31 0 6 1290 5297 238 97 23 chr3 92439959 92441011 -67158772 + Lx9 LINE L1 6316 7391 -253 6 1290 214 292 28 0 chr3 92441031 92441103 -67158680 + GA-rich Low_complexity Low_complexity 3 76 0 6 1290 918 277 155 19 chr3 92441366 92441559 -67158224 - RMER5 LTR ERV1 -76 458 215 6 1290 2236 121 59 82 chr3 92441559 92441999 -67157784 - RLTR23 LTR ERV1 0 430 1 6 1290 918 277 155 19 chr3 92441999 92442180 -67157603 - RMER5 LTR ERV1 -320 214 33 6 1290 357 216 57 29 chr3 92442666 92442771 -67157012 - Lx8 LINE L1 -495 6978 6871 6 1290 27 29 0 0 chr3 92442938 92442972 -67156811 + AT_rich Low_complexity Low_complexity 1 34 0 6 1290 485 133 12 173 chr3 92443866 92444039 -67155744 + RLTR45-int LTR ERVK 1011 1155 -6089 6 1290 665 113 10 176 chr3 92444207 92444400 -67155383 + RLTR45-int LTR ERVK 1168 1328 -5916 6 1290 21 0 0 0 chr3 92444676 92444697 -67155086 + AT_rich Low_complexity Low_complexity 1 21 0 6 1290 2095 49 0 4 chr3 92445071 92445336 -67154447 - L1_Mus1 LINE L1 0 6567 6304 6 1290 255 61 0 0 chr3 92445962 92445995 -67153788 + (TG)n Simple_repeat Simple_repeat 1 33 0 6 1290 382 263 162 0 chr3 92447635 92447734 -67152049 + PB1D9 SINE Alu 6 120 0 6 1290 538 289 40 0 chr3 92447747 92447896 -67151887 + RSINE1 SINE B4 3 157 -8 6 1290 182 313 0 8 chr3 92450673 92450805 -67148978 + (CTG)n Simple_repeat Simple_repeat 2 132 0 6 1290 288 0 0 0 chr3 92451306 92451338 -67148445 + (A)n Simple_repeat Simple_repeat 1 32 0 6 1290 21 36 0 0 chr3 92452599 92452627 -67147156 + AT_rich Low_complexity Low_complexity 1 28 0 6 1290 1959 299 114 19 chr3 92453085 92454542 -67145241 - L1M2 LINE L1 -458 5422 3874 6 1290 315 49 0 0 chr3 92454551 92454592 -67145191 + (TA)n Simple_repeat Simple_repeat 2 42 0 6 1290 270 153 13 40 chr3 92454593 92454668 -67145115 + GA-rich Low_complexity Low_complexity 3 75 0 6 1290 285 98 0 0 chr3 92455789 92455830 -67143953 + (CA)n Simple_repeat Simple_repeat 1 41 0 6 1290 207 0 0 0 chr3 92455977 92456000 -67143783 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 6 1290 197 175 32 0 chr3 92456197 92456260 -67143523 + (TAGA)n Simple_repeat Simple_repeat 4 68 0 6 1290 205 192 19 0 chr3 92456285 92456337 -67143446 + (TAAG)n Simple_repeat Simple_repeat 2 54 0 6 1290 2229 213 43 41 chr3 92456368 92456724 -67143059 - RMER20B LTR ERVK -137 490 134 6 1290 198 0 0 0 chr3 92456724 92456746 -67143037 + (TGGGGG)n Simple_repeat Simple_repeat 3 24 0 6 1290 2229 213 43 41 chr3 92456746 92456874 -67142909 - RMER20B LTR ERVK -494 133 6 6 1290 957 53 0 0 chr3 92457124 92457255 -67142528 + L1Md_A LINE L1 6451 6581 -1 6 1290 30 0 0 0 chr3 92457282 92457312 -67142471 + AT_rich Low_complexity Low_complexity 1 30 0 6 1290 369 267 0 34 chr3 92457313 92457402 -67142381 - B1_Mur4 SINE Alu -2 148 63 6 1290 342 321 0 9 chr3 92459750 92459857 -67139926 + (CTG)n Simple_repeat Simple_repeat 3 108 0 6 1290 218 159 57 21 chr3 92462313 92462459 -67137324 + (TCTA)n Simple_repeat Simple_repeat 1 151 0 6 1290 568 207 32 0 chr3 92462473 92462692 -67137091 + (TCTA)n Simple_repeat Simple_repeat 1 226 0 6 1290 266 189 0 0 chr3 92463792 92463845 -67135938 + Lx9 LINE L1 6993 7045 -599 6 1290 3398 253 58 16 chr3 92464253 92465258 -67134525 - Lx9 LINE L1 -26 7618 6572 6 1290 4726 248 38 89 chr3 92465268 92466991 -67132792 - L1_Rod LINE L1 -762 5945 4349 6 1290 297 0 0 0 chr3 92466991 92467024 -67132759 + (TG)n Simple_repeat Simple_repeat 2 34 0 6 1290 4726 248 38 89 chr3 92467024 92467688 -67132095 - L1_Rod LINE L1 -2359 4348 3681 6 1290 315 71 0 0 chr3 92467689 92467731 -67132052 + (TC)n Simple_repeat Simple_repeat 2 43 0 6 1290 380 258 40 8 chr3 92467754 92467879 -67131904 + Lx6 LINE L1 7080 7208 -252 6 1290 1180 105 428 8 chr3 92467877 92468113 -67131670 + L1_Mur3 LINE L1 3958 4292 -1588 6 1290 5361 188 8 9 chr3 92468807 92469945 -67129838 + L1_Mur3 LINE L1 4267 5403 -477 6 1290 252 130 0 0 chr3 92469985 92470031 -67129752 + (T)n Simple_repeat Simple_repeat 1 46 0 6 1290 1069 92 7 0 chr3 92470032 92470174 -67129609 - B1_Mus2 SINE Alu 0 147 5 6 1290 536 161 0 0 chr3 92470178 92470282 -67129501 - L1_Rod LINE L1 -3639 3068 2975 6 1290 1918 260 66 8 chr3 92470287 92470802 -67128981 + Lx6 LINE L1 6912 7456 -4 6 1290 442 235 52 7 chr3 92470803 92470957 -67128826 - L1_Rod LINE L1 -3727 2980 2820 6 1290 387 0 0 0 chr3 92470991 92471034 -67128749 + (TG)n Simple_repeat Simple_repeat 2 44 0 6 1290 506 360 26 7 chr3 92471039 92471190 -67128593 - B3A SINE B2 -38 160 7 6 1290 2373 219 59 38 chr3 92471208 92472100 -67127683 - L1_Rod LINE L1 -3915 2792 1886 6 1290 349 353 0 8 chr3 92472743 92472877 -67126906 + (CTG)n Simple_repeat Simple_repeat 3 135 0 6 1290 219 220 0 0 chr3 92475698 92475748 -67124035 + (TCTG)n Simple_repeat Simple_repeat 2 51 0 6 1290 455 273 48 36 chr3 92475832 92475999 -67123784 - RMER30 DNA MER1_type -32 170 2 6 1290 1462 230 127 24 chr3 92476083 92476461 -67123322 + MTD LTR MaLR 1 417 -2 6 1290 748 256 39 33 chr3 92476769 92476951 -67122832 + B3A SINE B2 1 183 -15 6 1290 2565 134 27 15 chr3 92477735 92478211 -67121572 + L1_Mur2 LINE L1 3191 3672 -2205 6 1290 21 0 0 0 chr3 92478313 92478334 -67121449 + AT_rich Low_complexity Low_complexity 1 21 0 6 1290 308 312 148 20 chr3 92478348 92479209 -67120574 - L1M2 LINE L1 -1409 4734 3764 6 1290 23 0 0 0 chr3 92479221 92479244 -67120539 + AT_rich Low_complexity Low_complexity 1 23 0 6 1290 486 318 45 35 chr3 92479607 92479894 -67119889 + Lx8 LINE L1 6371 6660 -813 6 1290 3144 243 60 2 chr3 92480054 92480953 -67118830 - Lx9 LINE L1 -8 7636 6686 6 1290 445 319 60 27 chr3 92482271 92482284 -67117499 - B3A SINE B2 0 198 187 6 1290 336 48 0 0 chr3 92482284 92482326 -67117457 + (TG)n Simple_repeat Simple_repeat 1 42 0 6 1290 445 319 60 27 chr3 92482326 92482496 -67117287 - B3A SINE B2 -12 186 10 6 1290 442 324 0 7 chr3 92484478 92484615 -67115168 + (CAG)n Simple_repeat Simple_repeat 3 138 0 6 1290 335 314 158 18 chr3 92485227 92485755 -67114028 + L1MB2 LINE L1 4999 5596 -578 6 1290 279 0 0 0 chr3 92485836 92485867 -67113916 + (CA)n Simple_repeat Simple_repeat 2 32 0 6 1290 368 269 7 58 chr3 92485910 92486048 -67113735 + L1MB2 LINE L1 5658 5788 -395 6 1290 246 303 119 32 chr3 92486060 92486081 -67113702 + ID_B1 SINE B4 87 219 -1 6 1290 263 320 20 10 chr3 92486081 92486182 -67113601 + B1F2 SINE Alu 43 144 -5 6 1290 303 304 93 15 chr3 92486204 92486408 -67113375 + L1MB2 LINE L1 5837 6056 -115 6 1290 1344 187 82 20 chr3 92486681 92486986 -67112797 - Lx5 LINE L1 0 7050 6727 6 1290 2094 180 30 28 chr3 92486986 92487420 -67112363 - RLTR25B LTR ERVK -258 770 336 6 1290 1683 206 13 20 chr3 92487421 92488006 -67111777 - L1_Mur2 LINE L1 -4414 1463 881 6 1290 214 191 0 0 chr3 92489357 92489399 -67110384 + A-rich Low_complexity Low_complexity 1 42 0 6 1290 246 324 0 0 chr3 92489648 92489719 -67110064 + (CTG)n Simple_repeat Simple_repeat 3 73 0 6 1290 334 333 40 40 chr3 92491794 92492066 -67107717 + B4A SINE B4 5 276 -16 6 1290 22 0 0 0 chr3 92492130 92492152 -67107631 + AT_rich Low_complexity Low_complexity 1 22 0 6 1290 414 289 179 12 chr3 92492430 92492598 -67107185 - B3A SINE B2 -2 196 1 6 1290 189 107 0 0 chr3 92493258 92493286 -67106497 + (CCG)n Simple_repeat Simple_repeat 2 29 0 6 1290 278 180 33 180 chr3 92494738 92494860 -67104923 + MER34B-int LTR ERV1 1838 1941 -3415 6 1290 222 149 21 0 chr3 92494861 92494908 -67104875 + T-rich Low_complexity Low_complexity 6 53 0 6 1290 853 147 6 28 chr3 92494914 92495096 -67104687 + MER34B-int LTR ERV1 1932 2109 -3247 6 1290 221 264 28 0 chr3 92495128 92495200 -67104583 + (TCTA)n Simple_repeat Simple_repeat 4 77 0 6 1290 497 309 43 24 chr3 92496400 92496609 -67103174 - B3 SINE B2 -3 213 1 6 1290 564 308 13 0 chr3 92496626 92496785 -67102998 + RSINE1 SINE B4 2 162 -3 6 1290 216 0 0 0 chr3 92496802 92496826 -67102957 + (CAGA)n Simple_repeat Simple_repeat 1 24 0 6 1290 514 174 0 0 chr3 92497329 92497421 -67102362 + 4.5SRNA scRNA scRNA 1 92 -2 6 1290 705 112 8 46 chr3 92497421 92497552 -67102231 + BC1_Mm scRNA scRNA 1 126 -26 6 1290 244 290 40 8 chr3 92497566 92497691 -67102092 - L1M3 LINE L1 -371 5800 5672 6 1290 353 295 79 22 chr3 92497788 92498106 -67101677 - L1M3 LINE L1 -665 5518 5177 6 1290 333 333 98 9 chr3 92498638 92498750 -67101033 - RSINE1 SINE B4 -14 151 30 6 1290 1244 207 95 106 chr3 92498750 92499128 -67100655 + ORR1D1 LTR MaLR 1 374 0 6 1290 2469 220 72 29 chr3 92499129 92499713 -67100070 + ORR1D1-int LTR MaLR 2 610 -760 6 1290 536 160 169 40 chr3 92500053 92500177 -67099606 - B2_Mm2 SINE B2 -55 140 1 1 1290 2515 200 15 68 chr3 92500177 92500932 -67098851 - L1_Mur2 LINE L1 -3722 2155 1441 2 1290 1393 199 14 14 chr3 92500922 92501288 -67098495 - L1_Mur2 LINE L1 -5766 1320 955 2 1290 14109 62 5 0 chr3 92501544 92503456 -67096327 + L1_Mm LINE L1 3763 5683 -200 3 1290 33652 78 6 10 chr3 92503452 92509711 -67090072 - L1Md_F2 LINE L1 0 6582 351 4 1290 7438 39 12 0 chr3 92509711 92510615 -67089168 + L1Md_F3 LINE L1 5668 6582 -2 5 1290 356 311 0 9 chr3 92511546 92511653 -67088130 + (CTG)n Simple_repeat Simple_repeat 3 108 0 6 1290 215 208 76 89 chr3 92512545 92512624 -67087159 - L4 LINE RTE -227 1802 1725 7 1290 563 324 14 47 chr3 92513690 92513894 -67085889 + B3A SINE B2 8 205 -11 8 1290 459 35 0 0 chr3 92513894 92513951 -67085832 + (CA)n Simple_repeat Simple_repeat 2 58 0 9 1290 2633 165 42 28 chr3 92513994 92514499 -67085284 + Lx4A LINE L1 6547 7058 0 1 1290 2375 263 31 6 chr3 92515870 92516573 -67083210 + Lx9 LINE L1 6732 7452 -192 1 1290 496 340 16 32 chr3 92516873 92517183 -67082600 - Lx8 LINE L1 -837 6636 6332 1 1290 497 64 13 0 chr3 92517841 92517919 -67081864 + (GA)n Simple_repeat Simple_repeat 2 80 0 1 1290 536 320 29 58 chr3 92518072 92518656 -67081127 + L1M2 LINE L1 4399 4965 -1178 1 1290 308 318 27 11 chr3 92518952 92519155 -67080628 + L1M2 LINE L1 5312 5527 -773 1 1290 232 342 16 33 chr3 92519180 92519301 -67080482 + Lx7 LINE L1 5589 5707 -1989 1 1290 681 47 0 0 chr3 92519316 92519401 -67080382 + (GGAA)n Simple_repeat Simple_repeat 3 87 0 1 1290 1885 132 3 20 chr3 92519440 92519787 -67079996 - L1_Mur2 LINE L1 -1467 4410 4070 1 1290 5626 52 4 3 chr3 92519788 92520520 -67079263 - L1_Mus3 LINE L1 -318 6320 5588 1 1290 230 330 70 52 chr3 92520533 92520648 -67079135 - RMER12 LTR ERVK -61 1261 1145 1 1290 3345 233 171 29 chr3 92520816 92521893 -67077890 - RMER12 LTR ERVK -92 1230 1 2 1290 415 331 0 8 chr3 92522844 92522978 -67076805 + (CTG)n Simple_repeat Simple_repeat 3 135 0 2 1290 372 252 9 0 chr3 92525014 92525125 -67074658 + (CA)n Simple_repeat Simple_repeat 1 112 0 2 1290 925 298 80 37 chr3 92527222 92527570 -67072213 - Lx7 LINE L1 0 7696 7332 2 1290 396 0 0 0 chr3 92527570 92527614 -67072169 + (TAAAA)n Simple_repeat Simple_repeat 3 46 0 2 1290 925 298 80 37 chr3 92527614 92527781 -67072002 - Lx7 LINE L1 -365 7331 7161 2 1290 3419 261 47 12 chr3 92528209 92528943 -67070840 - Lx7 LINE L1 -583 7113 6359 2 1290 1098 97 0 0 chr3 92528943 92529087 -67070696 + B1_Mus2 SINE Alu 1 144 -3 2 1290 241 47 47 0 chr3 92529087 92529130 -67070653 + (CAAA)n Simple_repeat Simple_repeat 2 46 0 2 1290 3419 261 47 12 chr3 92529130 92529396 -67070387 - Lx7 LINE L1 -1338 6358 6078 2 1290 2269 227 122 64 chr3 92529458 92530128 -67069655 + L1_Rod LINE L1 4521 5233 -614 2 1290 315 0 0 0 chr3 92530128 92530163 -67069620 + (TA)n Simple_repeat Simple_repeat 2 36 0 2 1290 2269 227 122 64 chr3 92530163 92530569 -67069214 + L1_Rod LINE L1 5234 5658 -189 2 1290 929 179 31 31 chr3 92530569 92530765 -67069018 + MTB LTR MaLR 1 196 -204 2 1290 950 254 48 87 chr3 92530769 92531204 -67068579 + Lx9 LINE L1 7225 7642 -2 3 1290 21124 169 44 16 chr3 92531433 92533704 -67066079 - L1_Mur2 LINE L1 0 5877 3525 3 1290 2399 121 142 19 chr3 92533704 92534133 -67065650 - RLTR45 LTR ERVK 0 482 1 3 1290 21124 169 44 16 chr3 92534133 92534272 -67065511 - L1_Mur2 LINE L1 -2353 3524 3392 3 1290 3257 41 8 0 chr3 92534272 92534665 -67065118 + MTA_Mm LTR MaLR 1 396 0 3 1290 21124 169 44 16 chr3 92534665 92535970 -67063813 - L1_Mur2 LINE L1 -2486 3391 2067 3 1290 252 111 0 0 chr3 92535970 92536015 -67063768 + (TGG)n Simple_repeat Simple_repeat 1 45 0 3 1290 450 0 0 0 chr3 92536024 92536074 -67063709 + (TG)n Simple_repeat Simple_repeat 1 50 0 3 1290 324 0 0 0 chr3 92536074 92536109 -67063674 + (GA)n Simple_repeat Simple_repeat 1 36 0 3 161 21124 172 41 16 chr3 92536109 92537215 -67062568 - L1_Mur2 LINE L1 -3828 2049 907 3 1291 281 313 16 58 chr3 92537627 92537817 -67061966 - Lx8 LINE L1 -813 6660 6479 3 1291 300 53 0 0 chr3 92537837 92537875 -67061908 + (A)n Simple_repeat Simple_repeat 1 38 0 3 1291 705 333 33 27 chr3 92537976 92538646 -67061137 + L1M2 LINE L1 4318 4991 -1152 3 1291 3185 201 197 20 chr3 92539228 92540252 -67059531 + Lx4B LINE L1 5816 7001 -49 4 1291 242 248 195 8 chr3 92540303 92540421 -67059362 + Lx5 LINE L1 6911 7050 0 4 1291 456 361 0 6 chr3 92541784 92541951 -67057832 + (CTG)n Simple_repeat Simple_repeat 3 168 0 4 1291 446 301 49 54 chr3 92543703 92543907 -67055876 + B3A SINE B2 9 211 -5 4 1291 49 0 0 0 chr3 92543950 92543999 -67055784 + AT_rich Low_complexity Low_complexity 1 49 0 4 1291 2142 198 68 10 chr3 92544020 92544506 -67055277 + Lx4A LINE L1 6544 7057 -1 4 1291 2549 246 24 7 chr3 92545864 92546586 -67053197 + Lx9 LINE L1 6732 7465 -179 4 1291 638 325 13 26 chr3 92546915 92547221 -67052562 - Lx8 LINE L1 -839 6634 6333 4 1291 21 57 0 0 chr3 92547509 92547544 -67052239 + AT_rich Low_complexity Low_complexity 1 35 0 4 1291 999 333 90 49 chr3 92547991 92548842 -67050941 + L1M2 LINE L1 4314 5189 -954 4 1291 1657 52 5 0 chr3 92548842 92549052 -67050731 + L1Md_T LINE L1 6372 6582 0 5 1291 999 333 90 49 chr3 92549052 92549232 -67050551 + L1M2 LINE L1 5190 5387 -756 4 1291 3400 19 2 2 chr3 92549233 92549649 -67050134 - MT-int LTR MaLR -20 1078 663 5 1291 261 298 24 32 chr3 92549656 92549781 -67050002 + L1_Mm LINE L1 5371 5494 -389 5 1291 299 299 37 19 chr3 92549781 92549944 -67049839 + L1M2 LINE L1 5574 5743 -548 4 1291 194 33 67 0 chr3 92549953 92549983 -67049800 + (GAAAA)n Simple_repeat Simple_repeat 4 35 0 5 1291 1408 224 12 0 chr3 92550012 92550355 -67049428 - L1_Mur2 LINE L1 -1467 4410 4064 5 1291 3906 201 19 25 chr3 92550350 92551314 -67048469 + L1_Mur2 LINE L1 4781 5738 -139 5 1291 3129 221 45 14 chr3 92551298 92552072 -67047711 + Lx4B LINE L1 6058 6855 -203 5 1291 26 30 0 0 chr3 92552076 92552109 -67047674 + AT_rich Low_complexity Low_complexity 1 33 0 5 1291 2471 139 7 2 chr3 92552154 92552558 -67047225 - L1_Mus3 LINE L1 -6 6632 6227 5 1291 369 295 58 0 chr3 92552577 92552716 -67047067 + Lx4B LINE L1 6866 7012 -46 5 1291 21 0 0 0 chr3 92552941 92552962 -67046821 + AT_rich Low_complexity Low_complexity 1 21 0 5 1291 1868 125 71 15 chr3 92553789 92554115 -67045668 + L1_Mus3 LINE L1 6295 6638 0 6 1291 408 314 0 8 chr3 92554519 92554644 -67045139 + (CTG)n Simple_repeat Simple_repeat 3 126 0 6 1291 2101 36 0 8 chr3 92555136 92555388 -67044395 + L1Md_F2 LINE L1 6321 6570 -12 6 1291 363 78 0 0 chr3 92555389 92555440 -67044343 + (TA)n Simple_repeat Simple_repeat 1 51 0 6 1291 341 384 16 55 chr3 92556956 92557138 -67042645 + B3 SINE B2 8 182 -34 6 1291 249 182 0 0 chr3 92557169 92557224 -67042559 + (CA)n Simple_repeat Simple_repeat 2 56 0 6 1291 22 0 0 0 chr3 92557229 92557251 -67042532 + AT_rich Low_complexity Low_complexity 1 22 0 6 1291 2493 193 32 6 chr3 92557274 92557774 -67042009 + Lx4A LINE L1 6544 7056 -2 6 1291 2603 265 42 11 chr3 92559115 92560026 -67039757 + Lx9 LINE L1 6698 7636 -8 6 1291 666 335 9 26 chr3 92560202 92560548 -67039235 - Lx8 LINE L1 -834 6639 6300 6 1291 21 57 0 0 chr3 92560818 92560853 -67038930 + AT_rich Low_complexity Low_complexity 1 35 0 7 1291 1023 329 89 71 chr3 92561295 92562361 -67037422 + L1M2 LINE L1 4314 5398 -745 7 1291 3565 45 0 7 chr3 92562433 92562875 -67036908 + L1Md_F2 LINE L1 6131 6569 -13 7 1291 396 124 20 40 chr3 92562883 92562984 -67036799 + GA-rich Low_complexity Low_complexity 3 101 0 7 1291 2898 156 22 19 chr3 92563020 92563609 -67036174 - Lx2A LINE L1 -1467 4410 3820 7 1291 4124 181 18 23 chr3 92563611 92563930 -67035853 + Lx2A LINE L1 4419 4724 -1153 7 1291 279 0 0 0 chr3 92563930 92563961 -67035822 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 7 1291 4124 181 18 23 chr3 92563961 92564589 -67035194 + Lx2A LINE L1 4725 5360 -517 7 1291 1421 189 85 5 chr3 92564586 92564962 -67034821 - L1_Mm LINE L1 -781 5105 4704 7 1291 2041 149 103 3 chr3 92564961 92565338 -67034445 + Lx LINE L1 6236 6650 -4 7 1291 3001 172 36 14 chr3 92565340 92566235 -67033548 + Lx2A LINE L1 5352 6282 -776 7 1291 3194 142 11 5 chr3 92566258 92566818 -67032965 + Lx2A LINE L1 6414 6976 -32 7 1291 424 107 12 12 chr3 92566811 92566896 -67032887 + Lx2A LINE L1 6923 7007 -1 7 1291 359 301 0 10 chr3 92567360 92567464 -67032319 + (CTG)n Simple_repeat Simple_repeat 3 105 0 7 1291 947 125 56 17 chr3 92568042 92568221 -67031562 - B2_Mm2 SINE B2 -8 187 2 8 1291 5376 91 24 1 chr3 92569256 92570007 -67029776 - L1_Mus3 LINE L1 -2 6636 5869 8 1291 324 148 0 0 chr3 92570087 92570148 -67029635 + (A)n Simple_repeat Simple_repeat 1 61 0 8 1291 2211 189 46 24 chr3 92570756 92571259 -67028524 + Lx4A LINE L1 6544 7057 -1 8 1291 2482 263 46 26 chr3 92572588 92573499 -67026284 + Lx9 LINE L1 6707 7635 -9 8 1291 308 322 0 8 chr3 92573783 92573905 -67025878 - Lx8 LINE L1 -1037 6436 6316 8 1291 241 244 22 22 chr3 92574255 92574347 -67025436 + Lx4B LINE L1 3979 4070 -1810 8 1291 335 326 65 39 chr3 92574532 92575148 -67024635 + L1M2 LINE L1 4357 4988 -1155 8 1291 281 311 30 24 chr3 92575423 92575605 -67024178 + L1_Mm LINE L1 5278 5489 -394 8 1291 251 290 30 22 chr3 92575619 92575753 -67024030 + L1M2 LINE L1 5607 5741 -448 8 1291 1362 196 58 0 chr3 92575834 92576160 -67023623 - L1_Mur2 LINE L1 -1467 4410 4066 8 1291 5128 194 29 24 chr3 92576157 92578215 -67021568 + Lx4B LINE L1 4781 6855 -203 8 1291 25 0 0 0 chr3 92578215 92578240 -67021543 + AT_rich Low_complexity Low_complexity 1 25 0 9 1291 6879 52 2 0 chr3 92578339 92579225 -67020558 - L1Md_F2 LINE L1 -12 6570 5683 9 1291 2243 131 26 3 chr3 92579223 92579607 -67020176 - Lx LINE L1 -45 6609 6217 9 1291 441 283 26 13 chr3 92579603 92579757 -67020026 + Lx4B LINE L1 6849 7004 -54 8 1291 642 197 0 0 chr3 92580980 92581112 -67018671 + A-rich Low_complexity Low_complexity 1 132 0 9 1291 398 346 0 7 chr3 92581357 92581494 -67018289 + (CTG)n Simple_repeat Simple_repeat 3 138 0 9 1291 566 338 8 31 chr3 92583514 92583728 -67016055 + B3A SINE B2 7 214 -2 9 1291 202 333 0 0 chr3 92583728 92583788 -67015995 + (CA)n Simple_repeat Simple_repeat 1 60 0 9 1291 2437 186 40 10 chr3 92583838 92584333 -67015450 + Lx4A LINE L1 6544 7053 -5 9 1291 2338 257 47 42 chr3 92585468 92586194 -67013589 + Lx9 LINE L1 6706 7437 -207 9 1291 4794 52 15 0 chr3 92586194 92586787 -67012996 + L1Md_F2 LINE L1 5969 6570 -12 9 1291 2338 257 47 42 chr3 92586787 92586993 -67012790 + Lx9 LINE L1 7438 7643 -1 9 1291 591 293 28 38 chr3 92587147 92587466 -67012317 - Lx8 LINE L1 -822 6651 6336 1 1291 293 304 58 63 chr3 92588349 92588949 -67010834 + Lx5 LINE L1 4400 4996 -1147 1 1291 274 253 0 12 chr3 92589308 92589392 -67010391 + L1_Mm LINE L1 5408 5490 -393 1 1291 317 297 21 56 chr3 92589400 92589617 -67010166 + Lx5 LINE L1 5591 5807 -484 1 1291 770 211 11 0 chr3 92589615 92589800 -67009983 - Lx4B LINE L1 -1467 4410 4224 1 1291 5656 177 21 124 chr3 92589816 92590027 -67009756 + Lx4B LINE L1 4415 4629 -1248 1 1291 189 0 0 0 chr3 92590027 92590048 -67009735 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 1 1291 5656 177 21 124 chr3 92590048 92590772 -67009011 + Lx4B LINE L1 4630 5344 -533 1 1291 687 25 0 0 chr3 92590772 92590853 -67008930 + (TAGA)n Simple_repeat Simple_repeat 2 82 0 1 1291 5656 177 21 124 chr3 92590853 92591030 -67008753 + Lx4B LINE L1 5345 5358 -519 1 1291 384 22 0 0 chr3 92591030 92591075 -67008708 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 1291 5656 176 38 39 chr3 92591075 92592228 -67007555 + Lx4B LINE L1 5359 6541 -517 1 1291 356 311 0 9 chr3 92592989 92593096 -67006687 + (CTG)n Simple_repeat Simple_repeat 3 108 0 1 1291 1595 38 0 0 chr3 92595128 92595314 -67004469 + B2_Mm1t SINE B2 1 186 -7 1 1291 334 315 58 58 chr3 92595325 92595514 -67004269 + B3A SINE B2 2 190 -8 1 1291 29 70 0 0 chr3 92596075 92596132 -67003651 + AT_rich Low_complexity Low_complexity 1 57 0 1 1291 1104 249 55 30 chr3 92596218 92596619 -67003164 - Lx9 LINE L1 -1597 6047 5637 1 1291 3188 236 85 16 chr3 92596630 92597652 -67002131 + Lx9 LINE L1 6425 7517 -127 1 1291 374 178 11 0 chr3 92597652 92597742 -67002041 + (TATATG)n Simple_repeat Simple_repeat 6 96 0 1 1291 345 130 0 0 chr3 92597743 92597812 -67001971 + Lx9 LINE L1 7480 7548 -96 1 1291 281 47 0 23 chr3 92597812 92597856 -67001927 + (TCTCTG)n Simple_repeat Simple_repeat 4 46 0 1 1291 23 0 0 0 chr3 92597910 92597933 -67001850 + AT_rich Low_complexity Low_complexity 1 23 0 1 1291 2885 194 79 44 chr3 92599430 92600017 -66999766 - L1_Mur3 LINE L1 -638 5242 4641 1 1291 207 0 0 0 chr3 92600017 92600040 -66999743 + (TGG)n Simple_repeat Simple_repeat 1 23 0 1 1291 2885 194 79 44 chr3 92600040 92600245 -66999538 - L1_Mur3 LINE L1 -1240 4640 4422 1 1291 32784 75 2 5 chr3 92600250 92602953 -66996830 - L1Md_F2 LINE L1 0 6582 3883 1 1291 3373 43 2 0 chr3 92602953 92603348 -66996435 - MTA_Mm LTR MaLR 0 396 1 1 1291 32784 88 18 3 chr3 92603348 92606842 -66992941 - L1Md_F2 LINE L1 -2001 3882 338 1 1291 7485 152 46 14 chr3 92606847 92608436 -66991347 - L1_Mur3 LINE L1 -1449 4431 2793 1 1291 246 324 0 0 chr3 92610443 92610514 -66989269 + (CTG)n Simple_repeat Simple_repeat 3 73 0 1 1291 477 97 0 0 chr3 92612230 92612302 -66987481 + (TG)n Simple_repeat Simple_repeat 2 73 0 1 1291 223 314 55 45 chr3 92612345 92612455 -66987328 + MIRb SINE MIR 99 209 -59 1 1291 1586 248 54 2 chr3 92613205 92613646 -66986137 + Lx7 LINE L1 6859 7322 -374 1 1291 372 161 0 0 chr3 92613687 92613768 -66986015 + GA-rich Low_complexity Low_complexity 2 82 0 1 1291 2339 120 16 0 chr3 92613875 92614257 -66985526 - Lx4A LINE L1 -798 6260 5873 1 1291 4891 134 40 1 chr3 92614257 92615014 -66984769 + Lx4A LINE L1 6271 7056 -2 1 1291 180 0 0 0 chr3 92615015 92615035 -66984748 + (TAAA)n Simple_repeat Simple_repeat 3 22 0 1 1291 709 283 156 15 chr3 92615046 92615372 -66984411 + Lx9 LINE L1 7065 7436 -208 1 1291 396 0 0 0 chr3 92615397 92615441 -66984342 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 1291 21 36 0 0 chr3 92615531 92615559 -66984224 + AT_rich Low_complexity Low_complexity 1 28 0 1 1291 1154 238 21 30 chr3 92615574 92615904 -66983879 - Lx7 LINE L1 -1781 5915 5589 1 1291 318 80 0 0 chr3 92616638 92616688 -66983095 + (TG)n Simple_repeat Simple_repeat 2 51 0 1 1291 231 333 66 49 chr3 92617446 92617629 -66982154 - MIR SINE MIR -22 246 51 1 1291 4920 133 20 71 chr3 92619621 92620570 -66979213 + RLTR13D6 LTR ERVK 2 902 0 1 1291 917 197 22 0 chr3 92620597 92620775 -66979008 - URR1A DNA MER1_type 0 226 45 1 1291 360 0 0 0 chr3 92621567 92621607 -66978176 + (TG)n Simple_repeat Simple_repeat 2 41 0 1 1291 450 240 10 0 chr3 92621612 92621708 -66978075 + Lx7 LINE L1 6533 6629 -1067 1 1291 702 35 0 0 chr3 92621788 92621873 -66977910 + (TAGA)n Simple_repeat Simple_repeat 4 88 0 1 1291 331 256 39 16 chr3 92621885 92622012 -66977771 - Lx7 LINE L1 -8 7688 7559 1 1291 4567 229 57 48 chr3 92622006 92623285 -66976498 - Lx7 LINE L1 -272 7424 6135 1 1291 644 252 32 6 chr3 92623393 92623549 -66976234 + MTC LTR MaLR 1 160 -261 1 1291 184 179 114 43 chr3 92623624 92623694 -66976089 + L3 LINE CR1 1725 1799 -2690 1 1291 288 70 0 0 chr3 92623822 92623865 -66975918 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 1291 402 350 102 0 chr3 92624185 92624371 -66975412 + RMER15 LTR ERVL 371 575 0 1 1291 717 302 66 4 chr3 92624589 92624832 -66974951 + RMER15-int LTR ERVL 281 538 -4461 1 1291 399 289 53 7 chr3 92624837 92624987 -66974796 + Lx8 LINE L1 6918 7074 -399 1 1291 344 320 0 54 chr3 92625115 92625244 -66974539 + RMER15 LTR ERVL 400 521 -54 1 1291 22 70 0 0 chr3 92625884 92625927 -66973856 + AT_rich Low_complexity Low_complexity 1 43 0 1 1291 1173 261 92 27 chr3 92626411 92626935 -66972848 + L1MB2 LINE L1 5612 6169 -2 1 1291 633 90 0 0 chr3 92632231 92632320 -66967463 + (TTTTC)n Simple_repeat Simple_repeat 2 90 0 1 1291 880 163 14 0 chr3 92632322 92632463 -66967320 - B1_Mur3 SINE Alu -5 144 2 1 1291 549 370 20 48 chr3 92632562 92632857 -66966926 + B4A SINE B4 4 290 -2 1 1291 282 221 71 71 chr3 92633237 92633349 -66966434 + MIRb SINE MIR 115 226 -42 1 1291 587 342 35 28 chr3 92634174 92634463 -66965320 + B4A SINE B4 1 291 -1 1 1291 2806 58 6 3 chr3 92635249 92635612 -66964171 + L1_Mus3 LINE L1 6270 6633 -5 1 1291 294 29 0 0 chr3 92636433 92636468 -66963315 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1 1291 7241 135 80 3 chr3 92636890 92638822 -66960961 - Lx LINE L1 -6 6648 4571 1 1291 770 339 30 56 chr3 92638847 92639313 -66960470 - Lx8 LINE L1 -148 7325 6872 1 1291 25 51 0 0 chr3 92640063 92640102 -66959681 + AT_rich Low_complexity Low_complexity 1 39 0 1 1291 1229 279 71 5 chr3 92640214 92640606 -66959177 - MTD LTR MaLR 0 419 2 1 1291 339 289 15 7 chr3 92641072 92641208 -66958575 + L1MB7 LINE L1 5019 5155 -991 1 1291 201 147 0 0 chr3 92641282 92641316 -66958467 + (TATATG)n Simple_repeat Simple_repeat 3 36 0 1 1291 221 365 13 26 chr3 92641316 92641392 -66958391 - ID4 SINE ID -6 77 3 1 1291 917 309 60 25 chr3 92641476 92642079 -66957704 + L1MB7 LINE L1 5265 5888 -296 1 1291 272 293 16 8 chr3 92642166 92642290 -66957493 + L1MB7 LINE L1 6044 6168 -16 1 1291 206 121 0 0 chr3 92643432 92643465 -66956318 + (TTCA)n Simple_repeat Simple_repeat 1 33 0 1 1291 250 297 73 86 chr3 92644176 92644327 -66955456 + MIR SINE MIR 44 192 -70 1 1291 267 104 0 0 chr3 92646009 92646057 -66953726 + (T)n Simple_repeat Simple_repeat 1 48 0 1 1291 976 267 109 17 chr3 92646939 92647286 -66952497 - RMER5 LTR ERV1 0 534 156 1 1291 324 250 65 11 chr3 92647301 92647394 -66952389 - RMER5 LTR ERV1 -433 101 4 1 1291 1839 208 50 47 chr3 92647468 92647852 -66951931 - RMER13B LTR ERVK 0 908 524 1 1291 466 149 0 0 chr3 92647854 92647921 -66951862 - RMER13B LTR ERVK -841 67 1 1 1291 3817 175 35 8 chr3 92648639 92649651 -66950132 - Lx5 LINE L1 -849 6201 5156 1 1291 626 205 132 1 chr3 92649649 92649820 -66949963 + Lx5 LINE L1 6242 6443 -615 1 1291 2109 88 23 13 chr3 92650088 92650398 -66949385 + L1_Mus2 LINE L1 6254 6566 0 1 1291 231 297 69 10 chr3 92651025 92651127 -66948656 + MTEb LTR MaLR 272 379 0 1 1291 281 319 134 31 chr3 92651961 92652184 -66947599 - L2a LINE L2 -43 3383 3138 1 1291 315 0 0 0 chr3 92652217 92652252 -66947531 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 1 1291 417 217 32 48 chr3 92652252 92652378 -66947405 + RCHARR1 DNA MER1_type 772 895 -79 1 1291 1072 147 20 10 chr3 92652387 92652587 -66947196 - Lx LINE L1 -6 6648 6447 1 1291 717 250 97 0 chr3 92652913 92653089 -66946694 + MTEb LTR MaLR 1 193 -186 1 1291 450 0 0 0 chr3 92653090 92653140 -66946643 + (TC)n Simple_repeat Simple_repeat 2 51 0 1 1291 212 0 0 35 chr3 92653432 92653461 -66946322 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 1 1291 1747 84 7 40 chr3 92653467 92653740 -66946043 - L1_Mus3 LINE L1 -1 6637 6374 1 1291 203 352 0 0 chr3 92654090 92654161 -66945622 + (CCA)n Simple_repeat Simple_repeat 3 73 0 1 1291 271 161 117 0 chr3 92656536 92656616 -66943167 - MTE2a LTR MaLR -4 375 284 1 1291 336 48 0 0 chr3 92657039 92657081 -66942702 + B2_Mm2 SINE B2 118 159 -36 1 1291 6764 69 1 2 chr3 92657318 92658235 -66941548 - L1Md_F2 LINE L1 -2 6580 5665 1 1291 2242 310 76 7 chr3 92658459 92659323 -66940460 + Lx8 LINE L1 6549 7472 -1 1 1291 875 329 11 5 chr3 92660547 92660781 -66939002 + ID_B1 SINE B4 14 256 -36 1 1291 464 304 45 34 chr3 92660783 92660960 -66938823 + B3A SINE B2 5 183 -15 1 1291 24 0 0 0 chr3 92661284 92661308 -66938475 + AT_rich Low_complexity Low_complexity 1 24 0 1 1291 283 365 77 11 chr3 92661557 92661727 -66938056 - MIR SINE MIR -69 199 22 1 1291 421 288 28 22 chr3 92662741 92662922 -66936861 - Lx9 LINE L1 -250 7394 7213 1 1291 190 279 130 14 chr3 92663424 92663493 -66936290 + L2c LINE L2 3130 3206 -181 1 1291 297 271 76 43 chr3 92664364 92664502 -66935281 + B3A SINE B2 62 212 -4 1 1291 187 231 0 25 chr3 92664606 92664646 -66935137 - L2a LINE L2 -43 3383 3345 1 1291 843 183 59 38 chr3 92665483 92665721 -66934062 - Lx3C LINE L1 -735 6241 5999 1 1291 3766 132 62 9 chr3 92665722 92666363 -66933420 + Lx3C LINE L1 6281 6955 -21 1 1291 342 0 0 0 chr3 92666372 92666410 -66933373 + (TAA)n Simple_repeat Simple_repeat 1 38 0 1 1291 230 278 57 11 chr3 92666410 92666498 -66933285 - MIR3 SINE MIR -24 184 97 1 1291 867 192 0 0 chr3 92667079 92667256 -66932527 + (TA)n Simple_repeat Simple_repeat 1 177 0 1 1291 915 86 0 8 chr3 92667574 92667703 -66932080 + L1_Mus1 LINE L1 6440 6567 0 1 161 2291 77 20 0 chr3 92667874 92668172 -66931611 - Lx3_Mus LINE L1 -1 7008 6705 1 1292 315 0 0 0 chr3 92668818 92668853 -66930930 + (TC)n Simple_repeat Simple_repeat 2 36 0 1 1292 423 0 0 0 chr3 92668853 92668900 -66930883 + (TG)n Simple_repeat Simple_repeat 1 47 0 1 1292 661 120 14 0 chr3 92668900 92669042 -66930741 + (TC)n Simple_repeat Simple_repeat 1 144 0 1 1292 251 336 23 101 chr3 92669605 92669734 -66930049 + ID_B1 SINE B4 99 217 -7 1 1292 286 241 29 40 chr3 92669853 92669978 -66929805 + Lx5 LINE L1 5777 5898 -1798 2 1292 542 259 10 11 chr3 92670053 92670184 -66929599 + B3A SINE B2 4 141 -54 2 1292 641 298 71 0 chr3 92670234 92670298 -66929485 + B3 SINE B2 2 65 -151 2 1292 2721 81 39 0 chr3 92670298 92670657 -66929126 - L1_Mus4 LINE L1 0 6636 6264 2 1292 641 298 71 0 chr3 92670657 92670790 -66928993 + B3 SINE B2 66 212 -4 2 1292 673 93 9 9 chr3 92671107 92671215 -66928568 + (TC)n Simple_repeat Simple_repeat 1 108 0 2 1292 401 326 48 105 chr3 92671288 92671583 -66928200 - B4 SINE B4 -10 282 5 2 1292 231 243 95 54 chr3 92673469 92673543 -66926240 + MIR SINE MIR 37 113 -155 2 1292 207 324 43 29 chr3 92675169 92675239 -66924544 - MIRb SINE MIR -183 85 15 2 1292 2932 86 13 5 chr3 92677123 92677508 -66922275 - L1_Mus4 LINE L1 -7 6629 6242 2 1292 1060 240 196 25 chr3 92678050 92678371 -66921412 - MTEb LTR MaLR -1 378 3 2 1292 2214 85 10 17 chr3 92678618 92678938 -66920845 - L1Md_F2 LINE L1 0 6582 6270 2 1292 1731 130 106 0 chr3 92679059 92679351 -66920432 - IAPEY2_LTR LTR ERVK 0 357 35 2 1292 503 267 97 59 chr3 92679453 92679750 -66920033 - L1MA4 LINE L1 -2088 5907 5601 2 1292 6232 160 53 46 chr3 92679746 92681343 -66918440 - L1_Mur2 LINE L1 -3425 2452 850 2 1292 8652 170 48 14 chr3 92681483 92683242 -66916541 - Lx4A LINE L1 0 7058 5221 2 1292 382 303 81 8 chr3 92683268 92683391 -66916392 + RSINE1 SINE B4 3 134 -31 2 1292 868 229 53 5 chr3 92683394 92683657 -66916126 - Lx7 LINE L1 -1881 5815 5539 2 1292 1026 224 130 41 chr3 92683973 92684266 -66915517 - ORR1D2 LTR MaLR -51 319 1 2 1292 329 287 7 31 chr3 92684278 92684410 -66915373 + ID4 SINE ID 11 137 -15 2 1292 468 177 17 58 chr3 92684847 92685021 -66914762 - Lx9 LINE L1 -1 7643 7477 2 1292 24 96 0 0 chr3 92685070 92685143 -66914640 + AT_rich Low_complexity Low_complexity 1 73 0 2 1292 3829 199 41 24 chr3 92685152 92685934 -66913849 - Lx9 LINE L1 -180 7464 6670 2 1292 1165 301 40 54 chr3 92685925 92686702 -66913081 - L1_Mur3 LINE L1 -3830 2050 1285 2 1292 469 188 0 0 chr3 92686698 92686778 -66913005 - Lx4A LINE L1 -864 5022 4943 2 1292 363 44 0 0 chr3 92686782 92686827 -66912956 + (TTA)n Simple_repeat Simple_repeat 3 47 0 2 1292 8342 131 21 5 chr3 92686827 92688117 -66911666 + Lx2B LINE L1 5689 6999 -1 2 1292 263 265 12 12 chr3 92688307 92688330 -66911453 + polypurine Low_complexity Low_complexity 1 23 0 2 1292 2240 159 85 16 chr3 92688330 92688707 -66911076 + MTB_Mm LTR MaLR 3 405 -2 2 1292 263 265 12 12 chr3 92688707 92688767 -66911016 + polypurine Low_complexity Low_complexity 24 83 0 2 1292 336 48 0 0 chr3 92689468 92689510 -66910273 + (TTGG)n Simple_repeat Simple_repeat 2 43 0 2 1292 254 221 262 38 chr3 92690173 92690253 -66909530 + B3A SINE B2 15 112 -86 2 1292 550 216 171 43 chr3 92690241 92690405 -66909378 + B3A SINE B2 13 197 -1 2 1292 1441 318 84 26 chr3 92690444 92691144 -66908639 + Lx8 LINE L1 6727 7467 -6 2 1292 808 236 123 20 chr3 92691436 92691568 -66908215 - B3 SINE B2 0 216 81 2 1292 513 0 0 0 chr3 92691568 92691625 -66908158 + (TG)n Simple_repeat Simple_repeat 1 57 0 2 1292 808 236 123 20 chr3 92691625 92691687 -66908096 - B3 SINE B2 -136 80 3 2 1292 927 259 71 0 chr3 92691791 92691988 -66907795 + B3 SINE B2 1 211 -5 2 1292 208 200 36 0 chr3 92691988 92692043 -66907740 + (TGGG)n Simple_repeat Simple_repeat 4 60 0 2 1292 1228 196 5 0 chr3 92692341 92692560 -66907223 + URR1A DNA MER1_type 7 226 0 2 1292 1376 18 0 12 chr3 92692959 92693127 -66906656 + (TAGA)n Simple_repeat Simple_repeat 1 166 0 2 1292 4893 85 0 0 chr3 92693136 92693771 -66906012 - L1_Mus3 LINE L1 -353 6285 5651 2 1292 2414 97 37 0 chr3 92693771 92694124 -66905659 + L1_Mus3 LINE L1 6294 6638 0 2 1292 455 304 35 12 chr3 92694236 92694409 -66905374 - Lx9 LINE L1 -1006 6638 6462 2 1292 722 264 24 38 chr3 92694474 92694762 -66905021 + Lx9 LINE L1 7257 7540 -104 2 1292 7854 161 87 13 chr3 92694785 92696625 -66903158 + Lx4B LINE L1 5144 7058 0 2 1292 631 193 0 42 chr3 92696642 92696761 -66903022 + B2_Mm2 SINE B2 27 140 -55 2 1292 1343 51 6 0 chr3 92696770 92696946 -66902837 + (TAGA)n Simple_repeat Simple_repeat 1 177 0 2 1292 621 0 0 0 chr3 92698392 92698461 -66901322 + (TTTTG)n Simple_repeat Simple_repeat 3 71 0 2 1292 226 238 106 30 chr3 92699502 92699583 -66900200 + MIR SINE MIR 22 108 -160 2 1292 216 158 0 0 chr3 92699611 92699649 -66900134 + T-rich Low_complexity Low_complexity 1 38 0 2 1292 8428 49 2 3 chr3 92699652 92700921 -66898862 - L1_Mus1 LINE L1 0 6567 5301 2 1292 292 333 36 24 chr3 92701134 92701300 -66898483 - L1M3 LINE L1 -1987 4153 3986 2 1292 336 188 344 0 chr3 92701448 92701544 -66898239 + Lx9 LINE L1 7349 7477 -167 2 1292 423 0 0 0 chr3 92701562 92701609 -66898174 + (TA)n Simple_repeat Simple_repeat 1 47 0 2 1292 263 206 16 0 chr3 92701609 92701672 -66898111 + Lx9 LINE L1 7581 7644 0 2 1292 710 335 55 30 chr3 92702996 92703362 -66896421 + RMER5 LTR ERV1 4 378 -156 2 1292 979 95 0 0 chr3 92703431 92703568 -66896215 - B1_Mus1 SINE Alu 0 148 12 2 1292 525 217 93 56 chr3 92703566 92703682 -66896101 + RMER5 LTR ERV1 368 488 -46 2 1292 381 22 0 0 chr3 92703682 92703728 -66896055 + (TAAAA)n Simple_repeat Simple_repeat 5 50 0 2 1292 525 217 93 56 chr3 92703728 92703772 -66896011 + RMER5 LTR ERV1 489 534 0 2 1292 437 278 0 0 chr3 92704582 92704672 -66895111 - RSINE1 SINE B4 -75 90 1 2 1292 2113 48 44 0 chr3 92707878 92708149 -66891634 - L1_Mus3 LINE L1 -204 6434 6152 2 1292 985 45 15 7 chr3 92708151 92708286 -66891497 + L1_Mus3 LINE L1 6499 6634 -4 2 1292 594 0 0 0 chr3 92708390 92708456 -66891327 + (TTTTG)n Simple_repeat Simple_repeat 1 66 0 2 1292 1115 60 0 15 chr3 92708456 92708592 -66891191 - B1_Mus1 SINE Alu -13 135 2 2 1292 1226 154 24 24 chr3 92709236 92709442 -66890341 + RLTR21 LTR ERVK 1 206 -1366 2 1292 2623 127 54 52 chr3 92709440 92709974 -66889809 + RLTR21 LTR ERVK 560 1094 -478 2 1292 180 77 0 0 chr3 92709974 92710000 -66889783 + (TG)n Simple_repeat Simple_repeat 1 26 0 2 1292 367 257 268 19 chr3 92710000 92710027 -66889756 + RMER12B LTR ERVK 1201 1252 -152 2 1292 351 0 0 0 chr3 92710027 92710066 -66889717 + (TG)n Simple_repeat Simple_repeat 1 39 0 2 1292 367 257 268 19 chr3 92710066 92710173 -66889610 + RMER12B LTR ERVK 1253 1402 -2 2 1292 342 0 0 0 chr3 92710381 92710419 -66889364 + (TG)n Simple_repeat Simple_repeat 1 38 0 2 1292 273 232 70 47 chr3 92710633 92710719 -66889064 - L1MD2 LINE L1 -5498 1049 962 2 1292 229 324 128 9 chr3 92710819 92710928 -66888855 - L1MD2 LINE L1 -5749 798 677 2 1292 1952 43 13 0 chr3 92711158 92711392 -66888391 - L1_Mus1 LINE L1 -220 6347 6111 2 1292 1728 67 0 0 chr3 92711392 92711601 -66888182 + L1_Mus1 LINE L1 6359 6567 0 2 1292 216 0 0 0 chr3 92711604 92711628 -66888155 + (A)n Simple_repeat Simple_repeat 1 24 0 2 1292 210 222 16 16 chr3 92712049 92712113 -66887670 + (TA)n Simple_repeat Simple_repeat 2 65 0 2 1292 7393 38 1 12 chr3 92712218 92713115 -66886668 - L1Md_F2 LINE L1 -1 6581 5695 2 1292 4861 86 16 97 chr3 92713300 92714114 -66885669 - RMER17A LTR ERVK -3 748 1 2 1292 1812 235 56 28 chr3 92716102 92716601 -66883182 + RLTR11A LTR ERVK 16 528 0 2 1292 3762 18 0 0 chr3 92717892 92718288 -66881495 + MTA_Mm LTR MaLR 1 396 0 2 1292 9915 28 2 1 chr3 92718288 92719385 -66880398 + MTA_Mm-int LTR MaLR 1 1098 0 2 1292 3775 15 0 0 chr3 92719385 92719781 -66880002 + MTA_Mm LTR MaLR 1 396 0 2 1292 414 53 0 0 chr3 92720435 92720492 -66879291 + (CA)n Simple_repeat Simple_repeat 2 58 0 2 1292 482 67 13 0 chr3 92720734 92720809 -66878974 + (TG)n Simple_repeat Simple_repeat 2 77 0 2 1292 871 40 76 132 chr3 92722621 92722765 -66877018 + L1_Mus2 LINE L1 6430 6565 -1 2 1292 26 0 0 0 chr3 92723164 92723190 -66876593 + AT_rich Low_complexity Low_complexity 1 26 0 2 1292 211 125 104 0 chr3 92724725 92724773 -66875010 + T-rich Low_complexity Low_complexity 5 57 0 2 1292 6306 101 5 3 chr3 92725469 92726362 -66873421 - L1_Mm LINE L1 -936 4947 4054 2 1292 3219 49 2 49 chr3 92726363 92726770 -66873013 + L1_Mus2 LINE L1 6168 6555 -11 2 1292 351 0 0 0 chr3 92726771 92726810 -66872973 + (TAA)n Simple_repeat Simple_repeat 1 39 0 2 1292 201 24 71 24 chr3 92729108 92729150 -66870633 + (CAAA)n Simple_repeat Simple_repeat 2 45 0 2 1292 1565 281 71 16 chr3 92730759 92731631 -66868152 - L1MA8 LINE L1 -277 6014 5094 2 1292 300 314 71 49 chr3 92731763 92731947 -66867836 - L1MC LINE L1 -978 5168 4981 2 1292 264 257 53 71 chr3 92732059 92732172 -66867611 - Lx8 LINE L1 -4 7469 7359 2 1292 224 158 18 0 chr3 92732209 92732266 -66867517 + (CA)n Simple_repeat Simple_repeat 2 59 0 2 1292 600 62 0 0 chr3 92732356 92732437 -66867346 + (GAGAA)n Simple_repeat Simple_repeat 2 82 0 2 1292 240 345 0 11 chr3 92732445 92732533 -66867250 - Lx9 LINE L1 -292 7352 7266 2 1292 294 331 37 16 chr3 92732627 92732817 -66866966 - L1MC LINE L1 -2068 4078 3885 2 1292 182 292 123 0 chr3 92733476 92733541 -66866242 + L2b LINE L2 3269 3341 -34 2 1292 1470 157 9 0 chr3 92733719 92733942 -66865841 + URR1B DNA MER1_type 1 225 0 2 1292 5867 68 89 4 chr3 92734554 92735336 -66864447 + L1_Mus3 LINE L1 5784 6632 -6 2 1292 312 91 0 0 chr3 92735358 92735402 -66864381 + (GAA)n Simple_repeat Simple_repeat 2 45 0 2 1292 339 44 0 0 chr3 92736475 92736520 -66863263 + (TG)n Simple_repeat Simple_repeat 2 46 0 2 1292 531 45 0 0 chr3 92736611 92736677 -66863106 + (GGGA)n Simple_repeat Simple_repeat 4 69 0 2 1292 22 35 0 0 chr3 92738514 92738543 -66861240 + AT_rich Low_complexity Low_complexity 1 29 0 2 1292 400 339 16 0 chr3 92738551 92738672 -66861111 + MER20 DNA MER1_type 91 213 -6 2 1292 229 204 0 20 chr3 92740790 92740840 -66858943 + RLTR28B LTR ERVL 68 116 -365 2 1292 273 57 0 0 chr3 92742788 92742823 -66856960 + (GAAAA)n Simple_repeat Simple_repeat 4 38 0 2 1292 1080 131 0 0 chr3 92742827 92743002 -66856781 + (GGAGA)n Simple_repeat Simple_repeat 3 177 0 2 1292 1024 219 9 9 chr3 92743292 92743504 -66856279 - B3 SINE B2 -3 213 2 2 1292 699 154 0 0 chr3 92745398 92745534 -66854249 + GA-rich Low_complexity Low_complexity 1 136 0 2 1292 24 53 0 0 chr3 92745725 92745763 -66854020 + AT_rich Low_complexity Low_complexity 1 38 0 2 1292 469 244 83 8 chr3 92745845 92745965 -66853818 - B3A SINE B2 -68 130 2 2 1292 1356 49 0 0 chr3 92746538 92746700 -66853083 + L1Md_F2 LINE L1 5425 5586 -297 3 1292 8013 61 15 3 chr3 92746700 92747680 -66852103 + L1Md_F2 LINE L1 5587 6578 -4 3 1292 1100 284 67 17 chr3 92750089 92750616 -66849167 + L1MA9 LINE L1 5411 5932 -1541 3 1292 327 336 16 32 chr3 92750879 92751005 -66848778 + MER20 DNA MER1_type 90 213 -6 3 1292 535 174 60 20 chr3 92753081 92753181 -66846602 - U6 snRNA snRNA -2 105 2 3 1292 909 244 14 40 chr3 92753208 92753430 -66846353 + B3 SINE B2 1 216 0 3 1292 1591 62 5 0 chr3 92753463 92753655 -66846128 + B2_Mm1t SINE B2 1 193 0 3 1292 424 299 31 22 chr3 92754168 92754380 -66845403 - RMER15 LTR ERVL -42 533 273 3 1292 202 114 0 64 chr3 92754535 92754582 -66845201 + (TTTG)n Simple_repeat Simple_repeat 2 45 0 3 1292 2177 202 27 52 chr3 92754913 92755354 -66844429 + RLTR28 LTR ERVL 5 438 -86 3 1292 3213 76 2 10 chr3 92755354 92755753 -66844030 + MTA_Mm LTR MaLR 1 396 0 3 1292 2177 202 27 52 chr3 92755753 92755827 -66843956 + RLTR28 LTR ERVL 439 507 -17 3 1292 245 282 12 0 chr3 92755848 92755933 -66843850 + L1M4 LINE L1 3022 3107 -3039 3 1292 396 82 0 16 chr3 92756076 92756138 -66843645 - L1_Mm LINE L1 -1200 4683 4623 3 1292 1259 65 0 18 chr3 92756139 92756358 -66843425 + (GAAA)n Simple_repeat Simple_repeat 1 214 0 3 1292 833 236 33 33 chr3 92756412 92756622 -66843161 - B3 SINE B2 -5 211 2 3 1292 222 91 0 0 chr3 92758102 92758135 -66841648 + (TG)n Simple_repeat Simple_repeat 1 33 0 3 1292 222 105 0 0 chr3 92758137 92758175 -66841608 + (CAGA)n Simple_repeat Simple_repeat 2 39 0 3 1292 294 73 0 0 chr3 92758175 92758216 -66841567 + (TG)n Simple_repeat Simple_repeat 1 41 0 3 1292 515 136 54 0 chr3 92758218 92758365 -66841418 + (CAGA)n Simple_repeat Simple_repeat 2 156 0 3 1292 7339 128 18 7 chr3 92758524 92760227 -66839556 + Lx LINE L1 4933 6654 0 3 1292 376 325 31 84 chr3 92760260 92760485 -66839298 - B3 SINE B2 0 216 4 3 1292 1145 312 62 11 chr3 92762962 92763429 -66836354 + L1_Mur3 LINE L1 5377 5867 -13 3 1292 346 322 16 32 chr3 92763745 92763870 -66835913 + MER20 DNA MER1_type 91 213 -6 3 1292 654 164 0 19 chr3 92765931 92766037 -66833746 - U6 snRNA snRNA -2 105 2 3 1292 3218 75 12 14 chr3 92766037 92766456 -66833327 - L1Md_F2 LINE L1 -12 6570 6153 3 1292 748 269 76 5 chr3 92766457 92766655 -66833128 + B3 SINE B2 2 213 -3 3 1292 335 289 284 24 chr3 92767168 92767371 -66832412 - RMER15 LTR ERVL -47 528 273 3 1292 859 262 16 10 chr3 92767502 92767695 -66832088 - B3 SINE B2 -21 195 2 3 1292 1117 85 0 79 chr3 92767710 92767888 -66831895 - L1Md_F2 LINE L1 0 6582 6419 3 1292 318 327 75 0 chr3 92767995 92768154 -66831629 + L1MB7 LINE L1 5982 6152 -32 3 1292 237 269 63 13 chr3 92769177 92769256 -66830527 - MLT1A1 LTR MaLR -315 93 11 3 1292 456 19 0 0 chr3 92769689 92769742 -66830041 + (GA)n Simple_repeat Simple_repeat 2 54 0 3 1292 38 0 0 0 chr3 92769930 92769968 -66829815 + AT_rich Low_complexity Low_complexity 1 38 0 3 1292 605 335 12 0 chr3 92769996 92770157 -66829626 - B3 SINE B2 -45 171 9 3 1292 456 35 0 0 chr3 92772697 92772755 -66827028 + (CAAT)n Simple_repeat Simple_repeat 3 60 0 3 1292 7263 106 23 6 chr3 92772850 92774544 -66825239 - L1_Mus3 LINE L1 0 6638 4923 3 1292 25908 55 43 6 chr3 92774545 92779173 -66820610 + L1Md_F2 LINE L1 630 5586 -297 3 1292 8438 58 2 0 chr3 92779173 92780155 -66819628 + L1Md_F2 LINE L1 5587 6570 -12 3 1292 10918 44 2 0 chr3 92780155 92781462 -66818321 + L1Md_F2 LINE L1 4277 5586 -297 3 1292 8196 63 3 10 chr3 92781464 92782440 -66817343 + L1Md_F2 LINE L1 5589 6559 -23 3 1292 438 20 0 0 chr3 92782440 92782491 -66817292 + (GGAA)n Simple_repeat Simple_repeat 3 53 0 3 1292 8196 63 3 10 chr3 92782491 92782514 -66817269 + L1Md_F2 LINE L1 6560 6581 -1 3 1292 638 132 99 0 chr3 92783461 92783582 -66816201 + Lx2 LINE L1 6859 6991 -6 3 1292 239 307 0 26 chr3 92783614 92783691 -66816092 + GA-rich Low_complexity Low_complexity 1 75 0 3 1292 197 108 132 26 chr3 92784531 92784569 -66815214 + L2c LINE L2 3135 3176 -211 3 1292 2985 114 9 0 chr3 92785374 92785805 -66813978 - Lx3A LINE L1 -495 6486 6052 3 1292 3578 107 4 4 chr3 92785805 92786284 -66813499 + Lx3A LINE L1 6489 6967 -14 3 1292 495 0 0 0 chr3 92786286 92786341 -66813442 + (TAAA)n Simple_repeat Simple_repeat 2 56 0 3 1292 189 0 0 0 chr3 92787992 92788013 -66811770 + (TACTG)n Simple_repeat Simple_repeat 4 24 0 3 1292 626 58 11 0 chr3 92791319 92791406 -66808377 + (TTTTC)n Simple_repeat Simple_repeat 1 88 0 3 1292 3333 86 9 4 chr3 92791406 92791861 -66807922 - L1_Mus3 LINE L1 -39 6599 6143 3 1292 874 237 50 29 chr3 92791980 92792219 -66807564 - ORR1D2 LTR MaLR -126 244 1 3 1292 339 180 67 26 chr3 92792586 92792697 -66807086 + L1MA4 LINE L1 5815 5925 -1548 3 1292 237 210 15 75 chr3 92793038 92793105 -66806678 - RLTR11A LTR ERVK -354 174 112 3 1292 5482 13 0 6 chr3 92793325 92793952 -66805831 + L1Md_A LINE L1 4963 5585 -298 3 1292 9631 3 0 0 chr3 92793953 92794949 -66804834 + L1Md_A LINE L1 5587 6582 0 3 1292 283 280 83 74 chr3 92795326 92795434 -66804349 + RMER15 LTR ERVL 356 464 -111 3 161 493 311 69 4 chr3 92798806 92799051 -66800732 + L1MB4 LINE L1 5854 6114 -66 3 1293 825 40 0 0 chr3 92799447 92799548 -66800235 + (GA)n Simple_repeat Simple_repeat 2 102 0 3 1293 1785 234 54 22 chr3 92799916 92800322 -66799461 + MTD LTR MaLR 1 419 0 3 1293 459 0 0 0 chr3 92801685 92801736 -66798047 + (TC)n Simple_repeat Simple_repeat 2 52 0 3 1293 423 100 0 0 chr3 92801736 92801805 -66797978 + (TG)n Simple_repeat Simple_repeat 1 70 0 3 1293 183 42 0 0 chr3 92803159 92803183 -66796600 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 3 1293 378 0 0 0 chr3 92803322 92803364 -66796419 + (CAAAA)n Simple_repeat Simple_repeat 4 45 0 3 1293 213 154 0 0 chr3 92803536 92803575 -66796208 + (TAG)n Simple_repeat Simple_repeat 1 39 0 3 1293 205 152 0 0 chr3 92803621 92803654 -66796129 + (CCTG)n Simple_repeat Simple_repeat 4 36 0 3 1293 419 275 11 58 chr3 92803689 92803878 -66795905 + GA-rich Low_complexity Low_complexity 1 180 0 3 1293 275 83 16 48 chr3 92803929 92803992 -66795791 + (GGGA)n Simple_repeat Simple_repeat 3 63 0 3 1293 318 50 0 0 chr3 92805160 92805200 -66794583 + (TAA)n Simple_repeat Simple_repeat 2 41 0 3 1293 422 296 64 90 chr3 92805369 92805498 -66794285 + L1MC4 LINE L1 6617 6814 -1228 3 1293 207 0 0 0 chr3 92805498 92805521 -66794262 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 3 1293 422 300 62 62 chr3 92805521 92805673 -66794110 + L1MC4 LINE L1 6815 6973 -1069 3 1293 183 80 0 0 chr3 92806747 92806772 -66793011 + (TTAA)n Simple_repeat Simple_repeat 3 27 0 3 1293 190 297 211 22 chr3 92807062 92807289 -66792494 + L2a LINE L2 3157 3426 0 3 1293 308 278 42 34 chr3 92807289 92807408 -66792375 + L1M5 LINE L1 5697 5816 -308 3 1293 22 0 0 0 chr3 92807770 92807792 -66791991 + AT_rich Low_complexity Low_complexity 1 22 0 3 1293 278 341 33 0 chr3 92808824 92808915 -66790868 + RSINE1 SINE B4 3 96 -69 3 1293 247 211 58 0 chr3 92809153 92809205 -66790578 - RMER20B LTR ERVK -11 616 562 3 1293 1788 202 78 10 chr3 92809207 92809607 -66790176 - RMER20B LTR ERVK -200 427 1 3 1293 551 283 129 10 chr3 92809642 92809835 -66789948 + 7SK RNA RNA 1 216 -115 3 1293 315 273 142 7 chr3 92810137 92810227 -66789556 - L1MC1 LINE L1 -1 6332 6240 3 1293 584 65 21 0 chr3 92810227 92810320 -66789463 + (TAGA)n Simple_repeat Simple_repeat 4 98 0 3 1293 315 273 142 7 chr3 92810320 92810384 -66789399 - L1MC1 LINE L1 -94 6239 6158 3 1293 1122 37 88 0 chr3 92810783 92810919 -66788864 + B1_Mus1 SINE Alu 1 148 0 3 1293 276 167 0 0 chr3 92810919 92810991 -66788792 + A-rich Low_complexity Low_complexity 1 72 0 3 1293 23 78 0 0 chr3 92811071 92811122 -66788661 + AT_rich Low_complexity Low_complexity 1 51 0 3 1293 677 313 12 30 chr3 92811135 92811303 -66788480 - RSINE1 SINE B4 0 165 1 3 1293 785 253 82 29 chr3 92811372 92811616 -66788167 - MER2 DNA MER2_type -18 327 71 3 1293 1861 187 18 95 chr3 92812158 92812559 -66787224 + ORR1D1 LTR MaLR 5 374 0 3 1293 324 0 0 0 chr3 92812776 92812812 -66786971 + (CA)n Simple_repeat Simple_repeat 1 36 0 3 1293 898 245 104 9 chr3 92813045 92813267 -66786516 + B4A SINE B4 15 257 -35 3 1293 420 37 0 0 chr3 92813445 92813499 -66786284 + (CATA)n Simple_repeat Simple_repeat 2 55 0 3 1293 590 276 106 77 chr3 92814243 92814478 -66785305 - B4A SINE B4 -2 290 49 3 1293 872 161 6 0 chr3 92815181 92815343 -66784440 + CT-rich Low_complexity Low_complexity 3 165 0 3 1293 202 304 158 46 chr3 92816095 92816247 -66783536 + MIRb SINE MIR 35 203 -65 3 1293 183 361 31 77 chr3 92817104 92817326 -66782457 + MIRb SINE MIR 49 260 -8 3 1293 185 178 0 22 chr3 92817647 92817693 -66782090 + GA-rich Low_complexity Low_complexity 1 45 0 3 1293 201 277 0 0 chr3 92818585 92818650 -66781133 + (CCG)n Simple_repeat Simple_repeat 3 67 0 3 1293 207 245 0 0 chr3 92818652 92818701 -66781082 + G-rich Low_complexity Low_complexity 3 51 0 3 1293 203 200 22 0 chr3 92818880 92818925 -66780858 + GA-rich Low_complexity Low_complexity 3 48 0 3 1293 200 163 23 0 chr3 92820384 92820427 -66779356 + A-rich Low_complexity Low_complexity 2 45 0 3 1293 480 99 0 0 chr3 92821143 92821214 -66778569 + (CA)n Simple_repeat Simple_repeat 1 71 0 3 1293 522 262 0 4 chr3 92822040 92822339 -66777444 + (CTG)n Simple_repeat Simple_repeat 1 297 0 3 1293 417 319 89 19 chr3 92824875 92825089 -66774694 + MIR SINE MIR 24 252 -10 3 1293 239 359 110 37 chr3 92825628 92825819 -66773964 - MIR3 SINE MIR -54 222 18 3 1293 500 316 75 8 chr3 92825883 92826122 -66773661 + MER2 DNA MER2_type 26 280 -65 3 1293 396 0 0 0 chr3 92826822 92826866 -66772917 + (TC)n Simple_repeat Simple_repeat 1 44 0 3 1293 198 0 0 0 chr3 92826866 92826887 -66772896 + (CA)n Simple_repeat Simple_repeat 1 22 0 3 1293 929 161 7 0 chr3 92826889 92827032 -66772751 - B1_Mur4 SINE Alu -6 144 1 3 1293 1068 270 37 7 chr3 92827092 92827364 -66772419 + MLT1D LTR MaLR 41 320 -185 4 1293 396 0 0 0 chr3 92828425 92828469 -66771314 + (TTTA)n Simple_repeat Simple_repeat 2 45 0 4 1293 253 274 0 16 chr3 92829185 92829248 -66770535 + GA-rich Low_complexity Low_complexity 3 64 0 4 1293 405 0 0 0 chr3 92829709 92829754 -66770029 + (CA)n Simple_repeat Simple_repeat 1 45 0 4 1293 237 326 10 31 chr3 92830708 92830806 -66768977 + L2c LINE L2 3291 3386 -1 4 1293 249 33 0 0 chr3 92831359 92831389 -66768394 + (CA)n Simple_repeat Simple_repeat 2 31 0 4 1293 253 337 76 0 chr3 92833390 92833482 -66766301 + MIRm SINE MIR 50 148 -128 4 1293 222 37 0 0 chr3 92833501 92833528 -66766255 + (CAAAA)n Simple_repeat Simple_repeat 4 30 0 4 1293 201 317 253 12 chr3 92835099 92835182 -66764601 + MIRm SINE MIR 25 127 -149 4 1293 5683 12 0 0 chr3 92835799 92836396 -66763387 - L1Md_T LINE L1 0 6582 5986 4 1293 1457 100 0 5 chr3 92837058 92837249 -66762534 + B2_Mm2 SINE B2 2 191 -4 4 1293 4050 272 44 51 chr3 92837687 92838978 -66760805 - Lx8 LINE L1 -2 7471 6190 4 1293 438 20 0 0 chr3 92838981 92839032 -66760751 + (TG)n Simple_repeat Simple_repeat 1 51 0 4 1293 1326 304 84 32 chr3 92839857 92840797 -66758986 + L1MB7 LINE L1 5160 6143 -41 4 1293 1514 75 0 5 chr3 92840820 92841007 -66758776 + B2_Mm2 SINE B2 2 187 -8 4 1293 1469 254 60 70 chr3 92841040 92841145 -66758638 - RMER5 LTR ERV1 -8 526 429 4 1293 3130 86 0 47 chr3 92841145 92841571 -66758212 + L1_Mus2 LINE L1 6161 6566 0 4 1293 1469 254 60 70 chr3 92841571 92841964 -66757819 - RMER5 LTR ERV1 -106 428 33 4 1293 974 212 80 139 chr3 92842108 92842409 -66757374 - RLTR14-int LTR ERV1 -2481 2836 2554 4 1293 2350 211 46 75 chr3 92842424 92842615 -66757168 - RMER20B LTR ERVK -47 580 420 4 1293 1385 40 51 23 chr3 92842615 92842792 -66756991 - L1_Mus1 LINE L1 -2 6565 6384 4 1293 2350 211 46 75 chr3 92842792 92842867 -66756916 - RMER20B LTR ERVK -208 419 337 4 1293 333 0 0 0 chr3 92842867 92842904 -66756879 + (TA)n Simple_repeat Simple_repeat 2 38 0 4 1293 2350 211 46 75 chr3 92842904 92843224 -66756559 - RMER20B LTR ERVK -291 336 12 4 1293 2364 172 110 21 chr3 92843230 92843563 -66756220 - RLTR14-int LTR ERV1 -2760 2557 2184 4 1293 387 0 0 0 chr3 92843563 92843606 -66756177 + (TTG)n Simple_repeat Simple_repeat 2 44 0 4 1293 2364 227 54 26 chr3 92843606 92844069 -66755714 - RLTR14-int LTR ERV1 -3134 2183 1812 4 1293 10348 142 28 5 chr3 92844125 92845955 -66753828 + Lx2B LINE L1 4088 5970 -1030 4 1293 3602 138 4 4 chr3 92845955 92846517 -66753266 - L1_Mm LINE L1 -640 5243 4682 4 1293 8058 80 16 4 chr3 92846514 92847804 -66751979 + L1_Mus3 LINE L1 5334 6638 0 4 1293 6836 113 42 24 chr3 92847808 92848833 -66750950 + Lx2B LINE L1 5956 6998 -2 4 1293 343 109 17 52 chr3 92849799 92849857 -66749926 - RLTR14-int LTR ERV1 -3517 1800 1745 4 1293 1687 109 74 0 chr3 92849881 92850138 -66749645 - ORR1A2 LTR MaLR -51 276 1 4 1293 7461 125 11 2 chr3 92850138 92851296 -66748487 - ORR1A2-int LTR MaLR 0 1963 795 4 1293 2175 221 30 29 chr3 92851331 92851905 -66747878 - RLTR14-int LTR ERV1 -3606 1711 1295 4 1293 1617 217 136 85 chr3 92851931 92852460 -66747323 - RLTR14-int LTR ERV1 -4029 1288 733 4 1293 759 189 77 19 chr3 92852498 92852570 -66747213 + MT2A LTR ERVL 13 84 -449 4 1293 5377 55 63 3 chr3 92852570 92853225 -66746558 - L1Md_F2 LINE L1 0 6582 5889 4 1293 759 231 77 21 chr3 92853225 92853367 -66746416 + MT2A LTR ERVL 85 351 -124 4 1293 358 217 14 14 chr3 92853886 92853956 -66745827 - LSU-rRNA_Hsa rRNA rRNA -1406 3629 3560 4 1293 716 218 26 160 chr3 92854224 92854537 -66745246 + RMER17C-int LTR ERVK 1112 1359 -1879 4 1293 283 108 148 57 chr3 92854603 92854691 -66745092 + RMER17C-int LTR ERVK 1342 1437 -1801 4 1293 3350 203 106 136 chr3 92854707 92856197 -66743586 + RMER17C-int LTR ERVK 1428 3057 -3080 4 1293 234 239 0 0 chr3 92856197 92856243 -66743540 - LSU-rRNA_Hsa rRNA rRNA -788 4247 4202 4 1293 3350 203 106 136 chr3 92856243 92856540 -66743243 + RMER17C-int LTR ERVK 3058 3384 -2753 4 1293 393 22 0 0 chr3 92856549 92856595 -66743188 + (CA)n Simple_repeat Simple_repeat 1 46 0 4 1293 219 298 21 21 chr3 92857334 92857430 -66742353 + CT-rich Low_complexity Low_complexity 4 99 0 4 1293 180 0 0 0 chr3 92857461 92857481 -66742302 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 4 1293 273 326 0 41 chr3 92857551 92857698 -66742085 + CT-rich Low_complexity Low_complexity 2 142 0 4 1293 1103 106 0 0 chr3 92858856 92858998 -66740785 + B1_Mus1 SINE Alu 5 146 -2 4 1293 808 242 35 13 chr3 92859125 92859351 -66740432 - MTD LTR MaLR -188 231 1 4 1293 2314 108 48 20 chr3 92859436 92859794 -66739989 + RLTR9A LTR ERVK 1 368 0 4 1293 293 277 11 57 chr3 92860153 92860241 -66739542 - MER45A DNA Tip100 0 178 95 4 1293 537 275 45 34 chr3 92860202 92860379 -66739404 + ID_B1 SINE B4 46 224 0 4 1293 475 293 104 69 chr3 92860605 92860807 -66738976 - MER58A DNA MER1_type -1 223 15 4 1293 290 336 64 0 chr3 92860819 92860944 -66738839 + MIR SINE MIR 111 243 -19 4 1293 252 0 0 0 chr3 92861037 92861065 -66738718 + (CA)n Simple_repeat Simple_repeat 2 29 0 4 1293 4912 81 5 0 chr3 92861227 92861844 -66737939 + L1_Mus1 LINE L1 5948 6567 0 4 1293 2078 169 23 65 chr3 92862164 92862563 -66737220 + RLTR14 LTR ERV1 1 382 0 4 1293 890 323 8 4 chr3 92862566 92862818 -66736965 + B4A SINE B4 1 253 -39 4 1293 192 158 0 0 chr3 92862857 92862895 -66736888 + (CA)n Simple_repeat Simple_repeat 1 38 0 4 1293 20796 25 0 1 chr3 92863036 92866105 -66733678 - L1Md_T LINE L1 0 6582 3516 4 1293 476 165 33 0 chr3 92866165 92866256 -66733527 + Lx9 LINE L1 7543 7636 -8 4 1293 192 40 0 0 chr3 92866867 92866892 -66732891 + (TTTG)n Simple_repeat Simple_repeat 1 25 0 4 1293 528 16 0 0 chr3 92866993 92867054 -66732729 + (CA)n Simple_repeat Simple_repeat 1 61 0 4 1293 3263 195 29 2 chr3 92867070 92867655 -66732128 - Lx5 LINE L1 -173 6877 6277 4 1293 183 129 0 0 chr3 92867655 92867686 -66732097 + (TTCTCC)n Simple_repeat Simple_repeat 5 35 0 4 1293 1218 55 14 0 chr3 92868877 92869022 -66730761 + B1_Mus1 SINE Alu 1 147 -1 4 1293 245 29 0 29 chr3 92869025 92869060 -66730723 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 4 1293 296 261 7 173 chr3 92869062 92869201 -66730582 + RLTR31_Mur LTR ERVK 333 448 -105 4 1293 943 241 76 19 chr3 92869263 92869525 -66730258 + Lx6 LINE L1 7180 7456 -4 4 1293 553 267 45 40 chr3 92869583 92869782 -66730001 + RLTR14-int LTR ERV1 1 200 -5117 4 1293 2988 170 120 16 chr3 92869784 92869909 -66729874 + RMER6A LTR ERVK 3 132 -624 4 1293 3923 64 11 0 chr3 92869909 92870379 -66729404 - MT2C_Mm LTR ERVL 0 475 1 4 1293 2988 170 120 16 chr3 92870379 92870936 -66728847 + RMER6A LTR ERVK 133 755 -1 4 1293 525 76 0 0 chr3 92871073 92871152 -66728631 + (TCTCTG)n Simple_repeat Simple_repeat 6 84 0 4 1293 207 122 49 0 chr3 92871167 92871208 -66728575 + CT-rich Low_complexity Low_complexity 2 44 0 4 1293 253 291 106 20 chr3 92871220 92871371 -66728412 + RLTR14-int LTR ERV1 414 577 -4740 4 1293 271 313 71 112 chr3 92872114 92872283 -66727500 + MTEa LTR MaLR 56 217 -162 4 1293 945 244 208 63 chr3 92872470 92872994 -66726789 + MT2B LTR ERVL 2 601 0 4 1293 498 75 0 0 chr3 92873088 92873155 -66726628 + (TA)n Simple_repeat Simple_repeat 1 67 0 4 1293 225 0 0 0 chr3 92873155 92873179 -66726604 + (GA)n Simple_repeat Simple_repeat 2 26 0 4 1293 580 243 6 91 chr3 92873251 92873560 -66726223 - RMER17C LTR ERVK -327 482 8 4 1293 4148 129 17 70 chr3 92873560 92873962 -66725821 - RMER17C-int LTR ERVK -2 3236 2875 4 1293 288 0 0 0 chr3 92873962 92873994 -66725789 + (TA)n Simple_repeat Simple_repeat 2 33 0 4 1293 4148 129 17 70 chr3 92873994 92874372 -66725411 - RMER17C-int LTR ERVK -364 2874 2499 4 1293 5652 219 85 102 chr3 92874414 92877049 -66722734 - RMER17C-int LTR ERVK -731 2507 1 4 1293 892 172 48 48 chr3 92877049 92877257 -66722526 - RMER17C LTR ERVK 0 410 203 4 1293 341 194 58 0 chr3 92878986 92879089 -66720694 + Lx3A LINE L1 6856 6964 -17 4 1293 231 36 0 0 chr3 92879091 92879119 -66720664 + (TAAAA)n Simple_repeat Simple_repeat 1 28 0 4 1293 1807 174 49 23 chr3 92879130 92879476 -66720307 + ORR1B1 LTR MaLR 40 394 0 4 1293 377 311 25 5 chr3 92879491 92879631 -66720152 + B3 SINE B2 5 147 -51 4 1293 722 165 0 8 chr3 92879632 92879759 -66720024 + ORR1A2 LTR MaLR 1 126 -220 4 1293 2167 82 138 39 chr3 92879759 92880165 -66719618 + RLTR47_MM LTR ERV1 2 447 -85 4 1293 1442 123 32 0 chr3 92880186 92880406 -66719377 + ORR1A2 LTR MaLR 93 319 -8 4 1293 2202 154 80 24 chr3 92880494 92880944 -66718839 + BGLII_B LTR ERVK 3 435 -6 4 1293 2475 178 6 76 chr3 92881750 92882292 -66717491 + L1_Mur3 LINE L1 4728 5231 -649 4 1293 681 199 46 66 chr3 92882322 92882591 -66717192 - RMER10B LTR ERVL 0 398 81 4 1293 3873 46 5 2 chr3 92882591 92883026 -66716757 + RLTR10C LTR ERVK 1 436 0 4 1293 676 187 68 62 chr3 92883026 92883045 -66716738 - RMER10B LTR ERVL -318 80 68 4 1293 2638 65 0 0 chr3 92883045 92883369 -66716414 + MMERVK10C-int LTR ERVK 20 343 -7238 4 1293 925 148 4 177 chr3 92883367 92883638 -66716145 + MMERVK10C-int LTR ERVK 729 952 -6629 4 1293 803 211 223 56 chr3 92883726 92884127 -66715656 + MMERVK10C-int LTR ERVK 314 611 -4795 4 1293 316 175 0 0 chr3 92884102 92884159 -66715624 + MMERVK10C-int LTR ERVK 1089 1145 -4261 4 1293 388 95 0 0 chr3 92884164 92884227 -66715556 + MMERVK10C-int LTR ERVK 1885 1947 -5634 4 1293 44534 19 4 16 chr3 92884233 92889248 -66710535 + MMERVK10C-int LTR ERVK 2552 7581 0 4 1293 442 258 19 34 chr3 92889248 92889282 -66710501 - RMER10B LTR ERVL -324 118 86 4 1293 3704 44 5 2 chr3 92889282 92889717 -66710066 + RLTR10C LTR ERVK 1 436 0 4 1293 442 211 21 21 chr3 92889717 92889799 -66709984 - RMER10B LTR ERVL -313 85 5 4 1293 2869 177 9 2 chr3 92889807 92890344 -66709439 + L1_Mur3 LINE L1 5232 5772 -108 4 1293 220 27 26 26 chr3 92890348 92890386 -66709397 + (TTG)n Simple_repeat Simple_repeat 2 39 0 4 1293 1181 62 7 0 chr3 92890390 92890536 -66709247 - B1_Mm SINE Alu 0 147 1 4 1293 624 237 0 0 chr3 92890611 92890729 -66709054 + RMER1B Other Other 594 711 -355 4 1293 828 204 68 112 chr3 92890922 92891152 -66708631 + RMER1C Other Other 32 242 -1100 4 1293 441 110 0 0 chr3 92891152 92891225 -66708558 + (CATA)n Simple_repeat Simple_repeat 2 74 0 4 1293 828 204 68 112 chr3 92891225 92891243 -66708540 + RMER1C Other Other 243 269 -1073 4 1293 238 352 0 11 chr3 92891241 92891333 -66708450 + RMER1B Other Other 49 139 -927 4 1293 240 381 10 0 chr3 92891405 92891502 -66708281 + RMER1C Other Other 34 131 -1211 4 1293 359 311 0 86 chr3 92891560 92891722 -66708061 + RMER1C Other Other 386 533 -809 4 1293 382 278 29 94 chr3 92891724 92891895 -66707888 + ORR1B1 LTR MaLR 49 208 -186 4 1293 327 234 0 25 chr3 92891869 92891948 -66707835 + ORR1B1 LTR MaLR 94 170 -159 4 1293 639 221 8 0 chr3 92892061 92892188 -66707595 + Lx6 LINE L1 6766 6893 -567 4 1293 198 0 0 0 chr3 92892190 92892212 -66707571 + (GA)n Simple_repeat Simple_repeat 2 23 0 4 1293 1964 254 91 12 chr3 92892262 92892820 -66706963 + Lx6 LINE L1 6852 7453 -7 4 1293 3263 50 2 15 chr3 92893016 92893421 -66706362 - MTB LTR MaLR 0 400 1 4 1293 245 257 14 0 chr3 92893514 92893584 -66706199 - B3 SINE B2 -6 210 140 4 1293 2302 201 93 15 chr3 92893584 92894110 -66705673 - RMER2 LTR ERV1 0 567 1 4 1293 588 272 15 0 chr3 92894111 92894247 -66705536 - B3 SINE B2 -74 142 5 4 1293 256 265 82 0 chr3 92894615 92894713 -66705070 - MLT1A0 LTR MaLR -18 347 242 4 1293 2117 253 146 14 chr3 92894982 92895719 -66704064 - Lx7 LINE L1 -1 7695 6877 4 1293 237 340 53 0 chr3 92895947 92896097 -66703686 - L1MC2 LINE L1 -23 6321 6164 4 1293 204 154 0 0 chr3 92896711 92896763 -66703020 + T-rich Low_complexity Low_complexity 1 52 0 4 1293 2371 112 75 15 chr3 92897217 92897606 -66702177 - L1_Mus4 LINE L1 -3 6633 6222 4 1293 994 168 119 0 chr3 92897964 92898166 -66701617 + URR1A DNA MER1_type 1 226 0 5 1293 573 15 0 0 chr3 92899838 92899904 -66699879 + (TCTA)n Simple_repeat Simple_repeat 1 66 0 5 1293 628 312 5 0 chr3 92899913 92900099 -66699684 - B3 SINE B2 -25 191 5 5 1293 473 175 39 0 chr3 92900164 92900267 -66699516 + MTD LTR MaLR 13 119 -302 5 1293 360 179 0 0 chr3 92900286 92900364 -66699419 + T-rich Low_complexity Low_complexity 1 78 0 5 1293 469 271 33 59 chr3 92900364 92900517 -66699266 - B1_Mur3 SINE Alu 0 149 1 5 1293 803 232 209 11 chr3 92900517 92900775 -66699008 + MTD LTR MaLR 106 419 0 5 1293 7961 56 2 4 chr3 92902197 92903172 -66696611 - L1Md_F2 LINE L1 -5 6577 5605 5 1293 1314 103 0 5 chr3 92903170 92903355 -66696428 - L1VL1 LINE L1 -6185 237 54 5 1293 394 159 113 31 chr3 92903364 92903461 -66696322 - B1_Mm SINE Alu -9 138 34 5 1293 331 298 59 30 chr3 92903484 92903619 -66696164 - Lx8 LINE L1 -135 7338 7200 5 1293 333 311 141 0 chr3 92903660 92903837 -66695946 - B3 SINE B2 -13 203 2 5 1293 203 0 0 36 chr3 92904093 92904121 -66695662 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 5 1293 262 106 0 0 chr3 92904733 92904780 -66695003 - B1_Mus2 SINE Alu 0 147 101 5 1293 245 139 0 0 chr3 92904888 92904924 -66694859 - Lx4B LINE L1 -507 6551 6516 5 1293 237 275 84 28 chr3 92906004 92906075 -66693708 + ID4_ SINE ID 6 80 -3 5 1293 324 305 0 26 chr3 92906946 92907101 -66692682 + L1_Mur3 LINE L1 1211 1361 -4519 5 1293 365 312 9 0 chr3 92907110 92907219 -66692564 - B4A SINE B4 -173 119 10 5 1293 572 237 8 0 chr3 92907268 92907386 -66692397 + B1F2 SINE Alu 27 145 -4 5 1293 532 316 47 51 chr3 92907422 92907679 -66692104 + L1ME3 LINE L1 5844 6099 -63 5 1293 340 106 0 0 chr3 92907958 92908005 -66691778 + (GGGAGA)n Simple_repeat Simple_repeat 5 51 0 5 1293 897 153 0 0 chr3 92908005 92908162 -66691621 + GA-rich Low_complexity Low_complexity 4 160 0 5 1293 2042 150 72 5 chr3 92908229 92908604 -66691179 + Lx6 LINE L1 4897 5296 -584 5 1293 2940 52 3 0 chr3 92908585 92908950 -66690833 - L1Md_F2 LINE L1 -1516 4367 4002 5 1293 9810 56 0 0 chr3 92908947 92910142 -66689641 + L1Md_F2 LINE L1 4392 5586 -297 5 1293 7993 45 11 22 chr3 92910143 92911146 -66688637 + L1Md_F2 LINE L1 5588 6579 -3 5 1293 2001 182 81 47 chr3 92911146 92911613 -66688170 + Lx6 LINE L1 5273 5755 -125 5 1293 302 202 35 72 chr3 92911648 92911777 -66688006 - RLTR13D3 LTR ERVK -42 1072 977 5 1293 264 235 148 0 chr3 92912426 92912507 -66687276 - RLTR13D3 LTR ERVK -1021 93 1 5 1293 3609 214 83 25 chr3 92912565 92913351 -66686432 + Lx6 LINE L1 6061 6891 -569 5 1293 1640 234 5 16 chr3 92913339 92913725 -66686058 + Lx7 LINE L1 6977 7358 -338 5 1293 1979 246 116 2 chr3 92913756 92914687 -66685096 - Lx6 LINE L1 0 7460 6424 5 1293 249 191 0 0 chr3 92914675 92914717 -66685066 - Lx6 LINE L1 -1230 6230 6189 5 1293 1306 171 139 13 chr3 92914760 92915063 -66684720 + Lx7 LINE L1 7356 7696 0 5 1293 832 164 0 17 chr3 92915823 92915997 -66683786 + T-rich Low_complexity Low_complexity 2 172 0 5 1293 5600 59 1 6 chr3 92916003 92916702 -66683081 - L1_Mus2 LINE L1 -1 6565 5870 5 1293 351 0 0 0 chr3 92916784 92916823 -66682960 + (CA)n Simple_repeat Simple_repeat 2 40 0 5 1293 180 77 0 0 chr3 92917972 92917998 -66681785 + (TGGA)n Simple_repeat Simple_repeat 1 26 0 5 1293 1228 41 0 0 chr3 92919275 92919421 -66680362 - B1_Mus2 SINE Alu 0 147 2 5 1293 201 39 0 0 chr3 92919659 92919685 -66680098 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 5 1293 189 0 0 0 chr3 92921000 92921021 -66678762 + (GGGTG)n Simple_repeat Simple_repeat 3 23 0 5 1293 350 237 19 76 chr3 92921104 92921209 -66678574 - PB1D7 SINE Alu 0 120 22 5 1293 291 321 131 22 chr3 92921209 92921239 -66678544 - ID_B1 SINE B4 0 222 73 5 1293 389 295 93 16 chr3 92921288 92921536 -66678247 + L1MEc LINE L1 22 288 -6112 5 1293 1095 86 0 0 chr3 92921619 92921793 -66677990 + (GA)n Simple_repeat Simple_repeat 2 175 0 5 1293 479 31 15 0 chr3 92921796 92921861 -66677922 + (TAGA)n Simple_repeat Simple_repeat 4 69 0 5 1293 363 293 82 97 chr3 92922326 92923000 -66676783 + L1MEc LINE L1 1021 1774 -4641 5 1293 23 33 0 0 chr3 92923793 92923823 -66675960 + AT_rich Low_complexity Low_complexity 1 30 0 5 1293 5711 65 19 1 chr3 92923823 92925093 -66674690 + L1VL4 LINE L1 188 1485 -2074 5 1293 7682 58 49 1 chr3 92925084 92926111 -66673672 + L1VL4 LINE L1 2480 3555 -4 5 1293 411 287 128 44 chr3 92927748 92927974 -66671809 + L2a LINE L2 3181 3425 -1 5 1293 378 0 0 0 chr3 92928116 92928158 -66671625 + (CA)n Simple_repeat Simple_repeat 1 42 0 5 1293 378 0 0 0 chr3 92928158 92928199 -66671584 + (GA)n Simple_repeat Simple_repeat 2 43 0 5 1293 2905 213 42 10 chr3 92928300 92928916 -66670867 + Lx5 LINE L1 6411 7046 -4 5 1293 222 169 0 0 chr3 92928987 92929052 -66670731 + (CAG)n Simple_repeat Simple_repeat 2 66 0 5 1293 237 316 39 78 chr3 92929130 92929458 -66670325 + L2c LINE L2 3071 3387 0 5 1293 249 83 0 0 chr3 92929539 92929575 -66670208 + (CATA)n Simple_repeat Simple_repeat 3 38 0 5 1294 253 292 52 0 chr3 92930797 92930893 -66668890 + L1M5 LINE L1 5796 5896 -228 5 1294 29 28 0 0 chr3 92931331 92931367 -66668416 + AT_rich Low_complexity Low_complexity 1 36 0 5 1294 309 26 0 0 chr3 92931619 92931657 -66668126 + (TCCA)n Simple_repeat Simple_repeat 2 39 0 5 1294 396 0 0 0 chr3 92935117 92935161 -66664622 + (TC)n Simple_repeat Simple_repeat 1 44 0 5 1294 4014 209 52 35 chr3 92936367 92937439 -66662344 - Lx5 LINE L1 0 7050 5863 5 1294 241 302 92 3 chr3 92938412 92938543 -66661240 + MIRc SINE MIR 71 216 -46 5 1294 2494 52 16 0 chr3 92939634 92939943 -66659840 - L1_Mus1 LINE L1 -1 6566 6253 5 1294 309 275 0 0 chr3 92940006 92940075 -66659708 + ID4_ SINE ID 10 78 -5 5 1294 243 222 18 53 chr3 92940303 92940417 -66659366 + (TTATA)n Simple_repeat Simple_repeat 5 114 0 5 1294 416 289 71 19 chr3 92940482 92940637 -66659146 + MIR SINE MIR 36 198 -64 5 1294 1120 62 7 40 chr3 92940829 92940980 -66658803 - B1_Mm SINE Alu 0 147 2 5 1294 972 239 14 9 chr3 92941028 92941239 -66658544 + B3 SINE B2 1 212 -4 5 1294 332 232 122 46 chr3 92941373 92941504 -66658279 + MLT2D LTR ERVL 10 150 -264 5 1294 692 136 181 0 chr3 92941511 92941710 -66658073 - RMER1C Other Other -1 1341 1107 5 1294 375 78 0 0 chr3 92942832 92942883 -66656900 + (A)n Simple_repeat Simple_repeat 1 51 0 5 1294 180 330 55 0 chr3 92942896 92943005 -66656778 - MIRb SINE MIR -66 202 88 5 1294 233 324 0 0 chr3 92943040 92943108 -66656675 + (TG)n Simple_repeat Simple_repeat 2 69 0 5 1294 1038 274 25 14 chr3 92943121 92943406 -66656377 - B4A SINE B4 0 292 5 5 1294 1565 265 26 11 chr3 92944901 92945252 -66654531 + MTD LTR MaLR 16 371 -48 5 1294 193 277 154 0 chr3 92945380 92945445 -66654338 - MIRc SINE MIR -76 192 118 5 1294 642 345 99 24 chr3 92947104 92947558 -66652225 - RMER5 LTR ERV1 -39 495 8 5 1294 450 0 0 0 chr3 92947905 92947955 -66651828 + (TG)n Simple_repeat Simple_repeat 2 51 0 5 1294 627 88 0 0 chr3 92949143 92949234 -66650549 + (TTCC)n Simple_repeat Simple_repeat 3 93 0 5 1294 364 320 23 8 chr3 92950362 92950491 -66649292 - MIR SINE MIR -23 239 109 5 1294 504 0 0 0 chr3 92953424 92953480 -66646303 + (CCCTG)n Simple_repeat Simple_repeat 4 59 0 5 1294 663 271 25 25 chr3 92954279 92954476 -66645307 - B3A SINE B2 0 198 2 5 1294 532 291 237 10 chr3 92954685 92955095 -66644688 + MLT1D LTR MaLR 3 505 0 5 1294 239 224 65 0 chr3 92955330 92955437 -66644346 + HAL1b LINE L1 1359 1472 -537 5 1294 408 40 0 0 chr3 92957031 92957081 -66642702 + (TG)n Simple_repeat Simple_repeat 1 50 0 5 1294 543 266 0 0 chr3 92957094 92957207 -66642576 - B3A SINE B2 -84 114 2 5 1294 453 36 0 0 chr3 92957278 92957333 -66642450 + (TA)n Simple_repeat Simple_repeat 2 56 0 5 1294 339 113 0 0 chr3 92957322 92957375 -66642408 + (TG)n Simple_repeat Simple_repeat 2 54 0 5 1294 963 281 13 72 chr3 92957379 92957686 -66642097 - B4A SINE B4 -3 289 1 5 1294 1869 162 31 26 chr3 92957760 92958184 -66641599 + Lx9 LINE L1 7212 7637 -7 5 1294 200 210 37 12 chr3 92958581 92958663 -66641120 + (TTA)n Simple_repeat Simple_repeat 1 84 0 5 1294 459 229 149 61 chr3 92958813 92958994 -66640789 + B3A SINE B2 2 198 0 5 1294 273 273 75 48 chr3 92959785 92959931 -66639852 - ORSL-2b DNA Tip100 -37 471 322 5 1294 991 271 31 51 chr3 92960067 92960359 -66639424 + B4A SINE B4 1 286 -6 5 1294 999 162 121 5 chr3 92961288 92961486 -66638297 + URR1A DNA MER1_type 5 225 -1 5 1294 1040 99 0 0 chr3 92961977 92962118 -66637665 + B1_Mus1 SINE Alu 2 142 -6 5 1294 30 69 0 0 chr3 92962837 92962895 -66636888 + AT_rich Low_complexity Low_complexity 1 58 0 5 1294 456 91 0 0 chr3 92963264 92963330 -66636453 + (CA)n Simple_repeat Simple_repeat 1 66 0 5 1294 401 245 120 20 chr3 92964863 92965013 -66634770 + L1M5 LINE L1 5585 5749 -375 5 1294 397 308 13 75 chr3 92965178 92965406 -66634377 + L1MB3 LINE L1 5665 5878 -305 5 1294 723 24 0 0 chr3 92965887 92965972 -66633811 + (TTCC)n Simple_repeat Simple_repeat 1 85 0 5 1294 333 336 0 0 chr3 92965972 92966079 -66633704 - PB1D9 SINE Alu -13 107 1 5 1294 279 0 0 0 chr3 92966193 92966224 -66633559 + (CA)n Simple_repeat Simple_repeat 2 32 0 5 1294 180 0 0 0 chr3 92966399 92966419 -66633364 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 5 1294 424 306 15 53 chr3 92967603 92967734 -66632049 + B1_Mur3 SINE Alu 18 143 -6 5 1294 22 70 0 0 chr3 92967734 92967777 -66632006 + AT_rich Low_complexity Low_complexity 1 43 0 5 1294 8732 202 66 23 chr3 92967933 92970159 -66629624 + MYSERV16_I-int LTR ERVK 1 2322 -4 5 1294 3127 140 29 12 chr3 92970162 92970681 -66629102 + RLTR11A LTR ERVK 1 528 0 5 1294 656 127 0 9 chr3 92970813 92970924 -66628859 + (TTCC)n Simple_repeat Simple_repeat 3 112 0 5 1294 1026 77 14 7 chr3 92970947 92971090 -66628693 - B1_Mus1 SINE Alu -2 146 3 5 1294 348 50 17 0 chr3 92971116 92971176 -66628607 - Lx LINE L1 0 6654 6594 6 1294 347 193 0 0 chr3 92971766 92971823 -66627960 + B3 SINE B2 2 58 -158 6 1294 2823 42 0 3 chr3 92972430 92972767 -66627016 - IAPLTR1a_Mm LTR ERVK -1 336 1 6 1294 8922 25 2 5 chr3 92972767 92973849 -66625934 - IAPEz-int LTR ERVK 0 6481 5403 6 1294 20882 30 24 10 chr3 92973830 92976458 -66623325 - IAPEz-int LTR ERVK -3811 2670 8 6 1294 2834 42 0 3 chr3 92976458 92976796 -66622987 - IAPLTR1a_Mm LTR ERVK 0 337 1 6 1294 1048 286 102 70 chr3 92976814 92977344 -66622439 - RMER13A LTR ERVK -200 660 114 6 1294 468 257 149 23 chr3 92977390 92977565 -66622218 + B3 SINE B2 14 210 -6 6 1294 227 325 96 16 chr3 92977835 92977960 -66621823 + L3 LINE CR1 3607 3741 -748 6 1294 387 264 11 11 chr3 92978194 92978286 -66621497 + PB1D10 SINE Alu 26 117 0 6 1294 321 26 0 0 chr3 92978894 92978932 -66620851 + (TG)n Simple_repeat Simple_repeat 1 38 0 6 1294 4145 203 37 12 chr3 92979250 92980147 -66619636 + Lx7 LINE L1 6548 7466 -230 6 1294 244 313 118 30 chr3 92980295 92980430 -66619353 + LTR33C LTR ERVL 477 623 -6 6 1294 223 252 379 0 chr3 92981036 92981139 -66618644 + MIR SINE MIR 14 155 -107 6 1294 269 232 82 21 chr3 92981562 92981659 -66618124 + L2a LINE L2 3120 3222 -204 6 1294 414 0 0 0 chr3 92981853 92981899 -66617884 + (CA)n Simple_repeat Simple_repeat 2 47 0 6 1294 329 250 30 10 chr3 92982608 92982709 -66617074 - MLT1D LTR MaLR -2 503 401 6 1294 870 288 158 12 chr3 92982818 92983141 -66616642 - MLT1D LTR MaLR -135 370 1 6 1294 313 260 116 25 chr3 92983200 92983337 -66616446 + MIRb SINE MIR 58 216 -52 6 1294 255 352 34 0 chr3 92983483 92983571 -66616212 + Tigger5 DNA MER2_type 2 92 -2314 6 1294 267 169 15 0 chr3 92984462 92984527 -66615256 - Lx9 LINE L1 -6 7638 7573 6 1294 211 163 57 75 chr3 92985558 92985611 -66614172 - L2c LINE L2 0 3387 3336 6 1294 363 312 44 40 chr3 92985928 92986155 -66613628 - L1ME1 LINE L1 -137 6042 5815 6 1294 1322 124 129 30 chr3 92986372 92986656 -66613127 + RLTR9A LTR ERVK 1 279 -89 6 1294 3549 201 80 107 chr3 92986667 92986778 -66613005 - RMER1A Other Other -5 1025 884 6 1294 252 0 0 0 chr3 92986778 92986806 -66612977 + (CA)n Simple_repeat Simple_repeat 2 29 0 6 1294 3549 201 80 107 chr3 92986806 92987745 -66612038 - RMER1A Other Other -147 883 3 6 1294 1232 54 0 0 chr3 92987969 92988117 -66611666 - B1_Mus1 SINE Alu 0 148 1 6 1294 342 299 124 0 chr3 92988118 92988255 -66611528 - L1MC LINE L1 -1376 4770 4617 6 1294 349 293 89 34 chr3 92988629 92989300 -66610483 - L1ME1 LINE L1 -1538 4608 3886 6 1294 847 291 43 61 chr3 92989631 92990239 -66609544 - L1ME1 LINE L1 -2499 3647 3051 6 1294 1736 304 87 15 chr3 92990274 92991018 -66608765 - Lx8 LINE L1 -37 7436 6639 6 1294 488 220 26 13 chr3 92991163 92991315 -66608468 - Lx9 LINE L1 -1 7643 7490 6 1294 4841 226 26 41 chr3 92991327 92992473 -66607310 - Lx6 LINE L1 -2 7458 6330 6 1294 640 290 52 4 chr3 92992472 92992704 -66607079 - Lx8 LINE L1 -844 6629 6387 6 1294 340 303 105 54 chr3 92992705 92993019 -66606764 + Lx7 LINE L1 5839 6168 -1528 6 1294 288 0 0 0 chr3 92993046 92993078 -66606705 + (CA)n Simple_repeat Simple_repeat 1 32 0 6 1294 383 324 40 40 chr3 92993219 92993441 -66606342 - L1M5 LINE L1 -3107 3039 2818 6 1294 698 200 131 0 chr3 92993456 92993601 -66606182 - RSINE1 SINE B4 0 165 2 6 1294 355 306 0 92 chr3 92993615 92993734 -66606049 - PB1D10 SINE Alu -2 115 8 6 1294 473 252 176 22 chr3 92993743 92994055 -66605728 - L1M5 LINE L1 -3339 2807 2448 6 1294 356 317 81 29 chr3 92994469 92994641 -66605142 - L2 LINE L2 -573 2846 2666 6 1294 252 77 0 0 chr3 92997956 92997995 -66601788 + (A)n Simple_repeat Simple_repeat 1 39 0 6 1294 1251 43 0 0 chr3 92998995 92999157 -66600626 + L1_Mus2 LINE L1 6405 6566 0 6 1294 24 32 0 0 chr3 92999231 92999262 -66600521 + AT_rich Low_complexity Low_complexity 1 31 0 6 1294 235 373 23 45 chr3 92999323 92999500 -66600283 - MIR SINE MIR -83 179 7 6 1294 201 320 163 15 chr3 93000602 93000805 -66598978 + MIRb SINE MIR 36 268 0 1 1294 1033 158 153 0 chr3 93001470 93001666 -66598117 + URR1A DNA MER1_type 1 226 0 2 1294 240 35 0 0 chr3 93001819 93001848 -66597935 + (TTG)n Simple_repeat Simple_repeat 2 30 0 3 1294 1149 89 0 0 chr3 93001867 93002013 -66597770 - B1_Mm SINE Alu 0 147 2 4 1294 459 286 15 22 chr3 93002242 93002378 -66597405 + ID_B1 SINE B4 82 216 -8 5 1294 291 85 0 0 chr3 93002378 93002425 -66597358 + (TAGA)n Simple_repeat Simple_repeat 4 50 0 6 1294 608 140 9 0 chr3 93002440 93002547 -66597236 + (GGAA)n Simple_repeat Simple_repeat 4 111 0 7 1294 862 324 15 12 chr3 93002548 93002807 -66596976 + B4A SINE B4 1 260 -32 8 1294 365 288 155 23 chr3 93002824 93003047 -66596736 + B4 SINE B4 48 281 -11 9 1294 195 100 0 0 chr3 93003050 93003080 -66596703 + (CA)n Simple_repeat Simple_repeat 2 31 0 1 1294 257 296 14 0 chr3 93003145 93003216 -66596567 + B4A SINE B4 217 288 -4 9 1294 231 299 9 18 chr3 93003285 93003394 -66596389 + GA-rich Low_complexity Low_complexity 5 112 0 1 1294 616 221 0 8 chr3 93003635 93003767 -66596016 + URR1A DNA MER1_type 1 131 -95 1 1294 261 0 0 0 chr3 93003772 93003801 -66595982 + (GAAA)n Simple_repeat Simple_repeat 4 32 0 1 1294 645 164 0 0 chr3 93003801 93003917 -66595866 + GA-rich Low_complexity Low_complexity 3 118 0 1 1294 462 156 0 43 chr3 93003918 93004012 -66595771 + URR1A DNA MER1_type 136 225 -1 1 1294 213 216 0 0 chr3 93004528 93004565 -66595218 + (ATTG)n Simple_repeat Simple_repeat 4 40 0 1 1294 444 288 122 10 chr3 93026350 93026665 -66573118 + L1M2 LINE L1 3825 4158 -1985 1 1294 361 283 101 67 chr3 93026666 93026844 -66572939 + B3A SINE B2 1 184 -14 1 1294 1437 242 58 1 chr3 93026845 93027236 -66572547 + Lx7 LINE L1 5490 5908 -1142 1 1294 3792 232 121 40 chr3 93027235 93028393 -66571390 + Lx7 LINE L1 6173 7424 -272 1 1294 600 14 0 0 chr3 93028424 93028493 -66571290 + (GA)n Simple_repeat Simple_repeat 1 69 0 1 1294 425 271 56 17 chr3 93028706 93028886 -66570897 + L1M2 LINE L1 4156 4342 -1801 1 1294 201 260 13 13 chr3 93029061 93029139 -66570644 + A-rich Low_complexity Low_complexity 3 80 0 2 1294 261 261 42 34 chr3 93029205 93029324 -66570459 + Lx8 LINE L1 7348 7467 -6 2 1294 1140 244 15 4 chr3 93029337 93029608 -66570175 + Lx9 LINE L1 6943 7216 -428 2 1294 253 272 19 10 chr3 93029615 93029719 -66570064 + L1Md_F LINE L1 217 321 -6317 2 1294 22062 78 13 0 chr3 93029742 93033608 -66566175 + L1Md_F LINE L1 303 4157 -1726 2 1294 7947 25 14 0 chr3 93033608 93034522 -66565261 + L1Md_F2 LINE L1 5642 6568 -14 2 1294 1833 196 39 42 chr3 93034533 93034965 -66564818 + Lx9 LINE L1 7212 7642 -2 2 1294 21 36 0 0 chr3 93035038 93035066 -66564717 + AT_rich Low_complexity Low_complexity 1 28 0 2 1294 201 74 0 0 chr3 93035181 93035208 -66564575 + (GGAA)n Simple_repeat Simple_repeat 2 28 0 2 1294 914 244 161 16 chr3 93036096 93036215 -66563568 + MTD LTR MaLR 1 134 -285 2 1294 225 94 0 0 chr3 93036215 93036247 -66563536 + (ATATG)n Simple_repeat Simple_repeat 1 32 0 2 1294 914 244 161 16 chr3 93036247 93036443 -66563340 + MTD LTR MaLR 135 361 -58 2 1294 865 258 237 39 chr3 93036427 93036887 -66562896 - MTD-int LTR MaLR -707 551 1 2 1294 1461 258 57 12 chr3 93036887 93037288 -66562495 - MTD LTR MaLR 0 419 1 2 1294 712 330 11 24 chr3 93037353 93037735 -66562048 + L1M2 LINE L1 4989 5365 -778 1 1294 943 306 98 52 chr3 93037727 93038154 -66561629 + Lx8 LINE L1 6964 7410 -63 3 1294 259 282 13 0 chr3 93038683 93038761 -66561022 + PB1D10 SINE Alu 33 111 -6 3 1294 523 189 8 8 chr3 93039839 93039972 -66559811 + GA-rich Low_complexity Low_complexity 1 133 0 3 1294 324 151 84 50 chr3 93040650 93040769 -66559014 - Lx9 LINE L1 0 7644 7522 3 1294 180 0 0 0 chr3 93040769 93040789 -66558994 + (TG)n Simple_repeat Simple_repeat 2 21 0 3 1294 961 143 53 12 chr3 93040798 93040968 -66558815 - Lx9 LINE L1 -190 7454 7278 3 1294 1545 214 7 3 chr3 93040966 93041266 -66558517 + Lx9 LINE L1 6974 7274 -370 3 1294 352 277 158 0 chr3 93041273 93041374 -66558409 + B1_Mur1 SINE Alu 20 136 -13 3 1294 306 0 0 0 chr3 93041375 93041409 -66558374 + (CA)n Simple_repeat Simple_repeat 2 35 0 3 1294 1978 101 9 57 chr3 93041536 93041871 -66557912 + RLTRETN_Mm LTR ERVK 4 322 0 3 1294 2019 201 69 18 chr3 93042088 93042581 -66557202 - RLTR11A2 LTR ERVK 0 527 10 3 1294 27 87 0 0 chr3 93042589 93042658 -66557125 + AT_rich Low_complexity Low_complexity 1 69 0 3 1294 190 95 95 0 chr3 93043695 93043758 -66556025 + (TAGA)n Simple_repeat Simple_repeat 4 72 0 4 1294 24 0 0 0 chr3 93043780 93043804 -66555979 + AT_rich Low_complexity Low_complexity 1 24 0 4 1294 1109 105 6 45 chr3 93044754 93044933 -66554850 + L1_Mus2 LINE L1 6393 6564 -2 4 1294 352 318 86 113 chr3 93045993 93046319 -66553464 - MER57F LTR ERV1 -119 317 1 4 1294 259 351 137 15 chr3 93046434 93046639 -66553144 + Charlie2a DNA MER1_type 560 789 -2072 4 1294 4719 59 2 8 chr3 93047546 93048140 -66551643 - L1Md_F2 LINE L1 0 6582 5993 4 1294 301 282 75 25 chr3 93048442 93048602 -66551181 - Charlie1b DNA MER1_type -6 517 350 4 1294 308 275 142 24 chr3 93048727 93048973 -66550810 - Charlie1b DNA MER1_type -176 347 73 4 1294 731 268 224 29 chr3 93049309 93049755 -66550028 + RMER4B LTR ERVK 17 549 -36 4 1294 294 251 22 15 chr3 93049806 93049936 -66549847 + MurERV4-int LTR ERVK 2 146 -5114 4 1294 393 278 26 9 chr3 93050156 93050241 -66549542 + MurERV4-int LTR ERVK 179 262 -4998 4 1294 2805 64 3 27 chr3 93050241 93050611 -66549172 + L1_Mus1 LINE L1 6207 6567 0 4 1294 393 278 26 9 chr3 93050611 93050641 -66549142 + MurERV4-int LTR ERVK 263 295 -4965 4 1294 614 149 18 0 chr3 93050641 93050755 -66549028 + GA-rich Low_complexity Low_complexity 1 116 0 5 1294 2775 199 65 32 chr3 93050772 93050832 -66548951 + RLTR22_Mur LTR ERVK 1 61 -1787 5 1294 189 0 0 0 chr3 93050832 93050853 -66548930 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 5 1294 2775 199 65 32 chr3 93050853 93050948 -66548835 + RLTR22_Mur LTR ERVK 62 163 -1685 5 1294 360 0 0 0 chr3 93050948 93050988 -66548795 + (TG)n Simple_repeat Simple_repeat 2 41 0 5 1294 2775 199 65 32 chr3 93050988 93051556 -66548227 + RLTR22_Mur LTR ERVK 164 748 -1100 5 1294 1713 86 4 4 chr3 93051837 93052071 -66547712 - L1_Mus2 LINE L1 -1 6565 6332 5 1294 410 123 110 12 chr3 93052165 93052247 -66547536 + RLTR22_Mur LTR ERVK 1593 1682 -166 5 1294 569 310 24 2 chr3 93052325 93052580 -66547203 + MurERV4-int LTR ERVK 279 532 -5248 4 1294 698 240 22 17 chr3 93052700 93052878 -66546905 + MurERV4-int LTR ERVK 1378 1556 -3704 4 1294 194 0 39 0 chr3 93052937 93052963 -66546820 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 5 1294 4026 226 26 47 chr3 93053126 93054229 -66545554 + MYSERV-int LTR ERVK 5458 6537 -13 5 1294 358 192 105 9 chr3 93054248 93054353 -66545430 + RMER4B LTR ERVK 17 131 -454 5 1294 21 0 0 0 chr3 93055090 93055111 -66544672 + AT_rich Low_complexity Low_complexity 1 21 0 5 1294 484 277 112 31 chr3 93055337 93055631 -66544152 - L1ME3B LINE L1 -412 5828 5511 5 1294 186 43 0 0 chr3 93055703 93055726 -66544057 + (TCTCTG)n Simple_repeat Simple_repeat 4 26 0 6 1294 25 51 0 0 chr3 93055777 93055816 -66543967 + AT_rich Low_complexity Low_complexity 1 39 0 6 1294 386 241 0 53 chr3 93056036 93056150 -66543633 - L1M2 LINE L1 -863 5280 5173 6 1294 4011 62 2 16 chr3 93056150 93056661 -66543122 - L1Md_F2 LINE L1 -12 6570 6067 6 1294 1731 55 14 0 chr3 93056661 93056879 -66542904 + L1Md_F2 LINE L1 5830 6050 -532 6 1294 833 305 52 12 chr3 93056881 93057286 -66542497 - L1M2 LINE L1 -962 5181 4761 6 1294 230 247 31 73 chr3 93057287 93057383 -66542400 + L1M1 LINE L1 5526 5617 -686 6 1294 532 282 23 8 chr3 93058768 93058900 -66540883 + RSINE1 SINE B4 3 136 -29 6 1294 342 123 0 0 chr3 93058902 93058959 -66540824 + (CA)n Simple_repeat Simple_repeat 2 58 0 6 1294 25 0 0 0 chr3 93058970 93058995 -66540788 + AT_rich Low_complexity Low_complexity 1 25 0 6 1294 840 297 146 13 chr3 93059072 93059403 -66540380 + MTE2b LTR MaLR 1 359 0 6 1294 317 316 74 0 chr3 93059440 93059535 -66540248 + PB1D10 SINE Alu 10 111 -6 6 1294 1744 229 39 36 chr3 93059868 93060361 -66539422 - RLTR11A2 LTR ERVK -33 494 1 7 1294 233 278 160 34 chr3 93060815 93060990 -66538793 - L1MA9 LINE L1 -65 6226 6030 7 1294 275 333 26 0 chr3 93060995 93061073 -66538710 - ID4 SINE ID 0 83 4 7 161 534 315 121 10 chr3 93061073 93061477 -66538306 - L1MA9 LINE L1 -282 6030 5582 7 1295 1479 216 65 30 chr3 93061979 93062347 -66537436 + RLTR25B LTR ERVK 482 862 -166 7 1295 189 0 0 0 chr3 93062373 93062394 -66537389 + (CA)n Simple_repeat Simple_repeat 2 22 0 7 1295 873 187 44 66 chr3 93062556 93062813 -66536970 + RLTR25A LTR ERVK 742 1103 0 7 1295 1183 202 185 20 chr3 93062858 93063156 -66536627 - MTD LTR MaLR -43 376 30 7 1295 722 279 17 35 chr3 93063173 93063403 -66536380 + MYSERV-int LTR ERVK 1066 1291 -5259 7 1295 1897 236 77 39 chr3 93063404 93064051 -66535732 + MYSERV-int LTR ERVK 1685 2356 -6603 7 1295 2051 221 169 32 chr3 93064034 93064697 -66535086 + MYSERV-int LTR ERVK 4231 4984 -1566 7 1295 427 214 20 30 chr3 93064673 93064774 -66535009 + MurERV4_19-int LTR ERVK 2632 2731 -3049 7 1295 355 329 39 85 chr3 93064779 93064932 -66534851 + MYSERV-int LTR ERVK 4981 5126 -1424 7 1295 541 279 43 38 chr3 93064932 93065118 -66534665 + RMER4A LTR ERVK 251 437 -29 7 1295 5052 168 42 49 chr3 93065167 93066243 -66533540 + MYSERV6-int LTR ERVK 7892 8959 0 8 1295 340 218 0 25 chr3 93066251 93066331 -66533452 + RLTR12B LTR ERVK 9 86 -442 8 1295 373 300 69 103 chr3 93066333 93066612 -66533171 + RLTR15 LTR ERVK 48 267 -92 8 1295 2186 237 51 14 chr3 93066637 93067207 -66532576 + Lx2B LINE L1 6409 6999 -1 8 1295 2450 83 0 58 chr3 93067348 93067693 -66532090 + ORR1A2 LTR MaLR 3 327 0 8 1295 330 87 0 0 chr3 93067995 93068041 -66531742 + (CTTG)n Simple_repeat Simple_repeat 2 47 0 8 1295 575 183 11 0 chr3 93068453 93068546 -66531237 + B3A SINE B2 7 100 -98 8 1295 406 299 101 11 chr3 93068665 93068854 -66530929 - MIRb SINE MIR -9 259 54 8 1295 556 242 32 40 chr3 93069093 93069218 -66530565 - B1_Mur2 SINE Alu -23 126 3 8 1295 225 213 64 0 chr3 93069185 93069232 -66530551 - MT2B LTR ERVL -309 292 243 8 1295 182 37 37 0 chr3 93069378 93069405 -66530378 + (CCCCCA)n Simple_repeat Simple_repeat 1 28 0 8 1295 621 0 0 0 chr3 93069467 93069536 -66530247 + (CAAAA)n Simple_repeat Simple_repeat 2 70 0 9 1295 858 264 14 0 chr3 93071031 93071239 -66528544 - B3 SINE B2 -2 214 4 9 1295 415 304 46 39 chr3 93071355 93071485 -66528298 + L2c LINE L2 3257 3387 0 9 1295 6665 100 48 83 chr3 93071964 93073092 -66526691 + Lx LINE L1 5589 6653 -1 9 1295 231 114 0 0 chr3 93073125 93073169 -66526614 + (A)n Simple_repeat Simple_repeat 1 44 0 9 1295 210 143 0 0 chr3 93073230 93073265 -66526518 + (GGGGA)n Simple_repeat Simple_repeat 3 37 0 9 1295 369 62 0 0 chr3 93073294 93073342 -66526441 + (CAGGA)n Simple_repeat Simple_repeat 3 50 0 9 1295 230 379 128 37 chr3 93074498 93075090 -66524693 - L3 LINE CR1 -185 4304 3659 9 1295 473 245 301 0 chr3 93075466 93075676 -66524107 + MIRb SINE MIR 3 268 0 9 1295 23 0 0 0 chr3 93075852 93075875 -66523908 + AT_rich Low_complexity Low_complexity 1 23 0 9 1295 197 388 63 46 chr3 93076509 93076747 -66523036 - L2 LINE L2 -827 2592 2351 1 1295 180 200 0 0 chr3 93077583 93077623 -66522160 + (TA)n Simple_repeat Simple_repeat 2 41 0 1 1295 294 29 0 0 chr3 93078197 93078232 -66521551 + (TTA)n Simple_repeat Simple_repeat 3 37 0 1 1295 515 323 108 20 chr3 93078396 93078848 -66520935 - L1MEg LINE L1 -378 5795 5304 1 1295 521 215 65 0 chr3 93079004 93079111 -66520672 - B1F SINE Alu 0 149 36 1 1295 618 286 43 32 chr3 93079278 93079466 -66520317 + B4 SINE B4 4 193 -99 1 1295 358 315 103 39 chr3 93079637 93080305 -66519478 - L1MEg LINE L1 -2477 3669 2959 1 1295 305 348 8 42 chr3 93080333 93080453 -66519330 - L1MEg LINE L1 -4462 1780 1665 1 1295 423 0 0 0 chr3 93080563 93080610 -66519173 + (GA)n Simple_repeat Simple_repeat 2 48 0 1 1295 208 244 13 13 chr3 93090558 93090637 -66509146 + (CAG)n Simple_repeat Simple_repeat 1 79 0 1 1295 208 244 13 13 chr3 93092073 93092152 -66507631 + (CAG)n Simple_repeat Simple_repeat 1 79 0 1 1295 207 291 0 0 chr3 93096612 93096691 -66503092 + (CAG)n Simple_repeat Simple_repeat 1 79 0 1 1295 2328 188 79 28 chr3 93097971 93098063 -66501720 - RLTR20B2 LTR ERVK 0 560 465 1 1295 441 0 0 0 chr3 93098063 93098112 -66501671 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 1295 2328 188 79 28 chr3 93098112 93098549 -66501234 - RLTR20B2 LTR ERVK -96 464 4 1 1295 2286 142 36 9 chr3 93098549 93098969 -66500814 - MYSERV16_I-int LTR ERVK 0 2326 1896 1 1295 439 275 78 36 chr3 93099153 93099319 -66500464 + RMER20B LTR ERVK 158 330 -297 1 1295 4784 169 36 29 chr3 93099319 93100173 -66499610 + RMER13A LTR ERVK 1 860 0 1 1295 638 277 98 61 chr3 93100461 93100757 -66499026 + MYSERV6-int LTR ERVK 81 387 -6532 1 1295 935 55 0 8 chr3 93100832 93100959 -66498824 + (GGAA)n Simple_repeat Simple_repeat 3 128 0 1 1295 634 281 30 0 chr3 93101553 93101717 -66498066 + MYSERV6-int LTR ERVK 1651 1819 -5100 1 1295 693 213 52 0 chr3 93102054 93102209 -66497574 + MYSERV6-int LTR ERVK 2791 2953 -6006 1 1295 219 139 0 0 chr3 93102209 93102245 -66497538 + (GAAA)n Simple_repeat Simple_repeat 1 36 0 1 1295 503 292 46 51 chr3 93102305 93102586 -66497197 + MYSERV6-int LTR ERVK 4752 4998 -782 1 1295 227 204 56 0 chr3 93102589 93102643 -66497140 + RLTR12B LTR ERVK 9 65 -463 1 1295 243 170 0 0 chr3 93102813 93102860 -66496923 + A-rich Low_complexity Low_complexity 1 47 0 1 1295 52 0 0 0 chr3 93103107 93103159 -66496624 + AT_rich Low_complexity Low_complexity 1 52 0 1 1295 210 98 49 0 chr3 93103888 93103929 -66495854 + (TG)n Simple_repeat Simple_repeat 1 43 0 1 1295 210 182 0 18 chr3 93104043 93104099 -66495684 + GA-rich Low_complexity Low_complexity 1 55 0 1 1295 3411 43 2 0 chr3 93104131 93104526 -66495257 + MTA_Mm LTR MaLR 1 396 0 1 1295 356 167 58 10 chr3 93104714 93104817 -66494966 + CT-rich Low_complexity Low_complexity 4 111 0 1 1295 270 247 0 64 chr3 93104818 93104896 -66494887 + RLTR15 LTR ERVK 38 110 -249 1 1295 1326 78 0 0 chr3 93104948 93105128 -66494655 + (TTC)n Simple_repeat Simple_repeat 1 180 0 1 1295 781 200 35 28 chr3 93105138 93105282 -66494501 - B1_Mur4 SINE Alu 0 150 6 1 1295 971 283 141 50 chr3 93105295 93105875 -66493908 + L1_Mur3 LINE L1 5054 5686 -194 1 1295 1817 203 77 0 chr3 93105891 93106270 -66493513 + MTD LTR MaLR 12 419 0 1 1295 608 245 59 50 chr3 93106270 93106318 -66493465 + Lx8 LINE L1 5723 5769 -531 1 1295 711 35 0 0 chr3 93106318 93106404 -66493379 + (GAAAA)n Simple_repeat Simple_repeat 5 90 0 1 1295 608 245 59 50 chr3 93106404 93106494 -66493289 + Lx8 LINE L1 5770 5866 -434 1 1295 537 16 0 0 chr3 93106494 93106556 -66493227 + (TAGA)n Simple_repeat Simple_repeat 3 64 0 1 1295 270 0 0 0 chr3 93106556 93106585 -66493198 + (CAGG)n Simple_repeat Simple_repeat 2 31 0 1 1295 608 318 68 44 chr3 93106585 93106808 -66492975 + Lx8 LINE L1 5832 6062 -1411 1 1295 1320 291 159 9 chr3 93106896 93107553 -66492230 + Lx8 LINE L1 6229 6983 -490 1 1295 183 42 0 0 chr3 93107860 93107884 -66491899 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 1 1295 4847 91 35 50 chr3 93107970 93108732 -66491051 + RMER17A LTR ERVK 1 751 0 1 1295 34 42 0 0 chr3 93108770 93108818 -66490965 + AT_rich Low_complexity Low_complexity 1 48 0 1 1295 593 267 61 6 chr3 93110148 93110329 -66489454 + B3A SINE B2 1 191 -7 1 1295 290 254 171 26 chr3 93111002 93111115 -66488668 + B4 SINE B4 94 274 -18 1 1295 423 0 0 0 chr3 93111122 93111169 -66488614 + (TC)n Simple_repeat Simple_repeat 1 47 0 1 1295 288 0 0 0 chr3 93111169 93111200 -66488583 + (CA)n Simple_repeat Simple_repeat 1 32 0 1 1295 303 283 81 70 chr3 93111393 93111579 -66488204 - L2a LINE L2 -1 3425 3238 1 1295 1279 141 11 0 chr3 93111954 93112145 -66487638 + B2_Mm2 SINE B2 3 195 0 1 1295 1560 63 11 0 chr3 93112219 93112409 -66487374 + B2_Mm1t SINE B2 1 192 -1 1 1295 207 271 93 12 chr3 93112568 93112654 -66487129 - L2a LINE L2 -938 2481 2389 1 1295 237 286 290 6 chr3 93112651 93112813 -66486970 + L2 LINE L2 2005 2212 -1207 1 1295 435 337 53 29 chr3 93112835 93113006 -66486777 + B4A SINE B4 114 288 -4 1 1295 497 217 64 85 chr3 93113674 93113815 -66485968 + B1F SINE Alu 10 147 -2 1 1295 1997 239 118 73 chr3 93115062 93115748 -66484035 + RMER19A LTR ERVK 1 717 -20 1 1295 189 0 0 0 chr3 93115944 93115965 -66483818 + (CAAA)n Simple_repeat Simple_repeat 4 24 0 1 1295 403 274 28 9 chr3 93116199 93116295 -66483488 + MTEb LTR MaLR 1 97 -282 1 1295 5474 43 3 3 chr3 93116295 93116929 -66482854 + L1Md_F2 LINE L1 5949 6582 0 1 1295 3734 172 58 20 chr3 93116963 93117674 -66482109 + RMER1A Other Other 293 1030 0 1 1295 185 333 10 31 chr3 93117738 93117834 -66481949 + L2 LINE L2 1874 1967 -1452 1 1295 212 0 36 0 chr3 93117995 93118023 -66481760 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 1 1295 221 117 49 16 chr3 93118329 93118390 -66481393 + (TCTA)n Simple_repeat Simple_repeat 2 64 0 1 1295 288 0 0 0 chr3 93118683 93118715 -66481068 + (CA)n Simple_repeat Simple_repeat 1 32 0 1 1295 699 326 69 62 chr3 93118716 93119151 -66480632 - Lx8 LINE L1 -39 7434 6997 1 1295 383 297 33 55 chr3 93119455 93119592 -66480191 + B1F2 SINE Alu 6 135 -12 1 1295 1004 163 122 0 chr3 93120251 93120447 -66479336 - URR1B DNA MER1_type -5 220 1 1 1295 3834 45 5 0 chr3 93120588 93121028 -66478755 + L1_Mus1 LINE L1 6125 6566 -1 1 1295 364 303 0 11 chr3 93121039 93121129 -66478654 + B3 SINE B2 27 115 -101 1 1295 28 48 0 0 chr3 93121208 93121250 -66478533 + AT_rich Low_complexity Low_complexity 1 42 0 1 1295 503 273 16 0 chr3 93121251 93121372 -66478411 + MER58B DNA MER1_type 218 340 -1 1 1295 456 282 22 200 chr3 93122144 93122231 -66477552 + B4 SINE B4 1 83 -209 1 1295 396 103 0 0 chr3 93122231 93122289 -66477494 + (CA)n Simple_repeat Simple_repeat 1 58 0 1 1295 456 282 22 200 chr3 93122289 93122556 -66477227 + B4 SINE B4 84 292 0 1 1295 414 0 0 0 chr3 93122556 93122602 -66477181 + (TA)n Simple_repeat Simple_repeat 2 47 0 1 1295 845 283 34 0 chr3 93122657 93122862 -66476921 + B4 SINE B4 6 217 -75 1 1295 561 268 36 7 chr3 93122887 93123026 -66476757 + B1_Mur2 SINE Alu 6 148 -1 1 1295 450 324 32 70 chr3 93123026 93123073 -66476710 + B4 SINE B4 91 269 -23 1 1295 192 40 0 0 chr3 93123073 93123098 -66476685 + (CA)n Simple_repeat Simple_repeat 2 26 0 1 1295 477 0 0 0 chr3 93123383 93123436 -66476347 + (CA)n Simple_repeat Simple_repeat 2 54 0 1 1295 698 242 0 0 chr3 93125774 93125902 -66473881 - ID_B1 SINE B4 -10 214 87 1 1295 260 301 47 81 chr3 93125799 93125947 -66473836 - MT2B2 LTR ERVL -319 265 123 1 1295 291 122 0 0 chr3 93126107 93126156 -66473627 + (TTTC)n Simple_repeat Simple_repeat 2 50 0 1 1295 375 132 0 0 chr3 93126296 93126364 -66473419 + (TC)n Simple_repeat Simple_repeat 2 69 0 1 1295 471 211 53 35 chr3 93137698 93137811 -66461972 - PB1D10 SINE Alu -2 115 1 1 1295 364 225 194 42 chr3 93137811 93138094 -66461689 + L1M3 LINE L1 5058 5383 -757 1 1295 307 253 161 0 chr3 93138123 93138210 -66461573 + PB1D10 SINE Alu 17 117 0 1 1295 243 152 0 0 chr3 93138210 93138256 -66461527 + GA-rich Low_complexity Low_complexity 3 48 0 1 1295 879 61 0 0 chr3 93138256 93138370 -66461413 + (GGGAA)n Simple_repeat Simple_repeat 2 115 0 1 1295 240 330 9 9 chr3 93138579 93138689 -66461094 + L1_Rod LINE L1 312 421 -6751 1 1295 240 228 76 0 chr3 93139205 93139284 -66460499 + L1_Rod LINE L1 464 548 -6624 1 1295 318 251 22 14 chr3 93139306 93139422 -66460361 + L1MD LINE L1 5387 5502 -831 1 1295 916 0 44 77 chr3 93140162 93140345 -66459438 + (TTCCC)n Simple_repeat Simple_repeat 3 179 0 1 1295 528 16 0 0 chr3 93140345 93140406 -66459377 + (TTTC)n Simple_repeat Simple_repeat 3 63 0 1 1295 556 250 56 14 chr3 93140432 93140574 -66459209 + Lx8 LINE L1 7173 7320 -153 1 1295 3042 231 64 15 chr3 93140578 93141426 -66458357 + L1_Mur3 LINE L1 4027 4915 -965 1 1295 312 329 53 30 chr3 93141430 93141599 -66458184 + RLTR12B LTR ERVK 59 231 -297 1 1295 375 209 209 0 chr3 93141610 93141701 -66458082 - MYSERV6-int LTR ERVK -5972 2987 2878 1 1295 597 153 9 9 chr3 93141698 93141810 -66457973 + MYSERV6-int LTR ERVK 4307 4418 -4541 1 1295 2149 141 23 35 chr3 93141803 93142200 -66457583 + MYSERV6-int LTR ERVK 3024 3415 -5544 1 1295 7551 42 1 1 chr3 93142200 93143100 -66456683 - L1Md_F2 LINE L1 0 6582 5683 1 1295 340 283 209 47 chr3 93143144 93143359 -66456424 - RMER12 LTR ERVK -105 1217 1102 1 1295 1536 261 86 20 chr3 93143884 93144433 -66455350 + RMER19B LTR ERVK 164 902 0 1 1295 453 294 10 10 chr3 93144433 93144536 -66455247 + MYSERV6-int LTR ERVK 5005 5107 -1443 1 1295 525 244 81 36 chr3 93144545 93144738 -66455045 + RMER4A LTR ERVK 251 554 -31 1 1295 5680 157 34 55 chr3 93144738 93144996 -66454787 + MYSERV6-int LTR ERVK 7771 8040 -919 1 1295 839 170 133 12 chr3 93144996 93145169 -66454614 + B2_Mm2 SINE B2 2 195 0 1 1295 5680 157 34 55 chr3 93145169 93145885 -66453898 + MYSERV6-int LTR ERVK 8041 8738 -221 1 1295 847 55 0 86 chr3 93145885 93146025 -66453758 + L1Md_F2 LINE L1 6455 6582 0 1 1295 5680 157 34 55 chr3 93146025 93146208 -66453575 + MYSERV6-int LTR ERVK 8739 8904 -55 1 1295 356 281 96 89 chr3 93146284 93146715 -66453068 + RLTR12B LTR ERVK 1 325 -203 1 1295 189 147 0 0 chr3 93146807 93146841 -66452942 + (CA)n Simple_repeat Simple_repeat 1 34 0 1 1295 2859 252 23 23 chr3 93146871 93147721 -66452062 + L1_Mur3 LINE L1 4888 5737 -143 1 1295 838 76 244 0 chr3 93147721 93147840 -66451943 + B1_Mus1 SINE Alu 1 148 0 1 1295 2157 268 41 52 chr3 93147840 93147917 -66451866 + L1_Mur3 LINE L1 5736 5805 -42 1 1295 306 0 0 0 chr3 93148021 93148055 -66451728 + (TTTTA)n Simple_repeat Simple_repeat 2 35 0 2 1295 424 58 0 0 chr3 93148057 93148109 -66451674 - L1Md_F2 LINE L1 -18 6564 6513 2 1295 3231 59 22 0 chr3 93148109 93148517 -66451266 + L1Md_F2 LINE L1 5765 6181 -401 2 1295 600 265 45 34 chr3 93148576 93148840 -66450943 + L1_Mur3 LINE L1 5188 5490 -807 2 1295 3519 13 39 3 chr3 93149564 93149946 -66449837 + MTA_Mm LTR MaLR 1 396 0 2 1295 1234 68 0 0 chr3 93150079 93150225 -66449558 - B1_Mm SINE Alu 0 147 2 2 1295 343 264 102 16 chr3 93151809 93151936 -66447847 - MIRb SINE MIR -28 240 103 2 1295 465 19 0 0 chr3 93153023 93153077 -66446706 + (TAGA)n Simple_repeat Simple_repeat 4 57 0 2 1295 686 253 137 26 chr3 93153133 93153360 -66446423 + B4A SINE B4 1 252 -40 2 1295 544 241 9 26 chr3 93153754 93153869 -66445914 + PB1D7 SINE Alu 1 113 -7 2 1295 264 141 296 37 chr3 93153970 93154051 -66445732 + PB1D7 SINE Alu 19 120 0 2 1295 189 0 0 0 chr3 93154056 93154077 -66445706 + (CAGA)n Simple_repeat Simple_repeat 4 24 0 2 1295 323 321 22 36 chr3 93154099 93154238 -66445545 + MER5A DNA MER1_type 4 140 -49 2 1295 434 58 0 28 chr3 93154371 93154442 -66445341 + (CAGAGA)n Simple_repeat Simple_repeat 4 72 0 2 1295 1255 34 11 17 chr3 93154664 93154844 -66444939 + (TG)n Simple_repeat Simple_repeat 2 180 0 2 1295 234 0 0 0 chr3 93154912 93154938 -66444845 + (TG)n Simple_repeat Simple_repeat 2 27 0 2 1295 578 71 12 0 chr3 93155507 93155591 -66444192 + (TTTTC)n Simple_repeat Simple_repeat 3 87 0 2 1295 1186 83 0 0 chr3 93155685 93155829 -66443954 + B1_Mus1 SINE Alu 5 148 0 2 1295 808 313 49 15 chr3 93156670 93156936 -66442847 - MER2 DNA MER2_type -6 339 65 2 1295 502 207 103 40 chr3 93157118 93157244 -66442539 + B1_Mur1 SINE Alu 5 138 -11 2 1295 23 33 0 0 chr3 93157559 93157589 -66442194 + AT_rich Low_complexity Low_complexity 1 30 0 2 1295 607 242 76 0 chr3 93157668 93157800 -66441983 - B1_Mur1 SINE Alu -6 143 2 2 1295 247 303 43 64 chr3 93157830 93157971 -66441812 - L2 LINE L2 -2412 1007 870 2 1295 1011 206 25 20 chr3 93158388 93158591 -66441192 + B3 SINE B2 13 216 0 2 1295 297 0 0 0 chr3 93158677 93158710 -66441073 + (CA)n Simple_repeat Simple_repeat 2 34 0 2 1295 267 31 0 0 chr3 93158710 93158741 -66441042 + (TA)n Simple_repeat Simple_repeat 2 33 0 2 1295 207 0 0 0 chr3 93159563 93159586 -66440197 + (A)n Simple_repeat Simple_repeat 1 23 0 2 1295 213 325 23 125 chr3 93159668 93159756 -66440027 - ID4 SINE ID 0 83 5 2 1295 1465 94 15 15 chr3 93160714 93160909 -66438874 + B2_Mm2 SINE B2 1 195 0 2 1295 287 326 36 24 chr3 93160969 93161120 -66438663 - L2a LINE L2 -1 3425 3222 2 1295 236 379 90 19 chr3 93162411 93162567 -66437216 + MIRm SINE MIR 3 169 -107 2 1295 283 364 13 31 chr3 93162577 93162736 -66437047 + L2a LINE L2 3049 3204 -222 2 1295 206 309 116 11 chr3 93163239 93163334 -66436449 - MIR SINE MIR -30 232 128 2 1295 257 214 26 82 chr3 93163521 93163627 -66436156 - B1_Mur1 SINE Alu -1 148 27 2 1295 575 27 14 0 chr3 93163754 93163827 -66435956 + (TTTTC)n Simple_repeat Simple_repeat 3 76 0 2 1295 352 86 0 0 chr3 93163832 93163890 -66435893 - Lx LINE L1 0 6654 6597 2 1295 22 0 0 0 chr3 93164521 93164543 -66435240 + AT_rich Low_complexity Low_complexity 1 22 0 2 1295 436 274 147 51 chr3 93164627 93164900 -66434883 + MLT2D LTR ERVL 91 389 -25 2 1295 330 115 0 0 chr3 93165578 93165630 -66434153 + (ATG)n Simple_repeat Simple_repeat 1 52 0 2 1295 260 274 0 0 chr3 93166396 93166458 -66433325 + B3 SINE B2 144 205 -11 2 1295 1927 144 27 61 chr3 93166501 93166916 -66432867 + RMER10B LTR ERVL 4 398 0 2 1295 690 245 92 0 chr3 93167234 93167483 -66432300 - RCHARR1 DNA MER1_type -125 849 578 2 1295 936 182 81 0 chr3 93167483 93167692 -66432091 + RLTR28 LTR ERVL 252 477 -47 2 1295 859 78 62 8 chr3 93167692 93167822 -66431961 + B2_Mm2 SINE B2 1 137 -58 2 1295 1944 182 40 64 chr3 93168403 93168856 -66430927 + RMER10A LTR ERVL 1 442 0 2 1295 1228 149 18 156 chr3 93168935 93169262 -66430521 + RLTR24 LTR ERV1 32 313 -216 2 1295 784 264 100 115 chr3 93169355 93169855 -66429928 + MYSERV6-int LTR ERVK 8249 8659 -300 2 1295 9886 103 21 7 chr3 93169904 93171243 -66428540 - MERVK26-int LTR ERVK -4463 2456 1099 2 1295 225 151 76 76 chr3 93172544 93172623 -66427160 + RMER2 LTR ERV1 461 539 -28 2 1295 664 167 158 8 chr3 93172740 93172867 -66426916 - B1_Mur3 SINE Alu -2 147 2 2 1295 570 115 0 10 chr3 93173010 93173107 -66426676 + URR1B DNA MER1_type 130 225 0 2 1295 468 91 0 0 chr3 93174000 93174066 -66425717 + (TC)n Simple_repeat Simple_repeat 2 67 0 2 1295 264 325 44 0 chr3 93174459 93174573 -66425210 + L3 LINE CR1 3991 4109 -380 2 1295 888 206 65 14 chr3 93174681 93174898 -66424885 - RMER1C Other Other -18 1324 1097 2 1295 662 264 77 25 chr3 93174935 93175217 -66424566 - RMER1C Other Other -514 828 572 2 1295 881 294 143 44 chr3 93175809 93176443 -66423340 - Cheshire DNA MER1_type 0 2420 1724 2 1295 683 276 6 0 chr3 93176431 93176601 -66423182 - ID_B1 SINE B4 -2 222 52 2 1295 256 307 0 0 chr3 93176619 93176694 -66423089 - Cheshire DNA MER1_type -672 1748 1674 2 1295 827 305 40 0 chr3 93176698 93176923 -66422860 + Lx9 LINE L1 7192 7422 -222 2 1295 219 69 0 0 chr3 93176923 93176952 -66422831 + (TATG)n Simple_repeat Simple_repeat 2 30 0 2 1295 827 305 40 0 chr3 93176952 93176998 -66422785 + Lx9 LINE L1 7423 7473 -171 2 1295 432 55 0 0 chr3 93176999 93177054 -66422729 + (CATATA)n Simple_repeat Simple_repeat 4 58 0 2 1295 207 0 0 0 chr3 93177055 93177078 -66422705 + (TG)n Simple_repeat Simple_repeat 1 23 0 2 1295 370 280 40 88 chr3 93177229 93177456 -66422327 - Cheshire DNA MER1_type -1673 747 532 2 1295 698 273 14 41 chr3 93178029 93178247 -66421536 + B3 SINE B2 5 216 0 2 1295 399 89 0 0 chr3 93180048 93180104 -66419679 + (GGAA)n Simple_repeat Simple_repeat 3 58 0 2 1295 1818 208 32 43 chr3 93180105 93180543 -66419240 - RMER10A LTR ERVL -9 433 1 2 1295 1632 241 45 2 chr3 93181240 93181640 -66418143 + MTD LTR MaLR 2 418 -1 2 1295 654 13 0 0 chr3 93181724 93181799 -66417984 + (TC)n Simple_repeat Simple_repeat 1 75 0 2 1295 216 0 0 0 chr3 93181799 93181822 -66417961 + (CA)n Simple_repeat Simple_repeat 1 24 0 2 1295 873 100 131 0 chr3 93182770 93182900 -66416883 + B1_Mus1 SINE Alu 2 148 0 2 1295 364 247 12 12 chr3 93183495 93183581 -66416202 + ID_B1 SINE B4 105 190 -34 2 1295 333 0 0 0 chr3 93183605 93183642 -66416141 + (CA)n Simple_repeat Simple_repeat 2 38 0 2 1295 389 244 13 0 chr3 93183696 93183774 -66416009 - ID4_ SINE ID -3 80 2 2 1295 1883 178 45 41 chr3 93184435 93184458 -66415325 - RMER10A LTR ERVL 0 442 419 2 1295 507 17 0 0 chr3 93184458 93184518 -66415265 + (GGAA)n Simple_repeat Simple_repeat 3 62 0 2 1295 1883 178 45 41 chr3 93184518 93184934 -66414849 - RMER10A LTR ERVL -24 418 1 2 1295 436 236 62 62 chr3 93185584 93185697 -66414086 - PB1D10 SINE Alu -32 117 5 2 1295 224 0 65 0 chr3 93186574 93186605 -66413178 + (CAGAGA)n Simple_repeat Simple_repeat 2 34 0 2 1295 379 288 0 102 chr3 93186975 93187122 -66412661 - B1F SINE Alu -16 133 2 2 1295 891 211 22 62 chr3 93187336 93187469 -66412314 + URR1B DNA MER1_type 7 140 -85 2 1295 243 0 0 0 chr3 93187469 93187496 -66412287 + (TAA)n Simple_repeat Simple_repeat 2 28 0 2 1295 891 211 22 62 chr3 93187496 93187589 -66412194 + URR1B DNA MER1_type 141 224 -1 2 1295 388 281 52 9 chr3 93188555 93188670 -66411113 + PB1D7 SINE Alu 1 120 0 2 1295 517 73 0 35 chr3 93188691 93188776 -66411007 + (GAAAA)n Simple_repeat Simple_repeat 4 85 0 2 1295 603 149 224 32 chr3 93188839 93188964 -66410819 + B1_Mur3 SINE Alu 1 149 0 2 1295 237 132 0 0 chr3 93188973 93189011 -66410772 + (TAA)n Simple_repeat Simple_repeat 2 39 0 2 1295 23 0 0 0 chr3 93189027 93189050 -66410733 + AT_rich Low_complexity Low_complexity 1 23 0 2 1295 286 146 0 0 chr3 93189123 93189171 -66410612 + Lx8 LINE L1 7424 7471 -2 2 1295 22 35 0 0 chr3 93189177 93189206 -66410577 + AT_rich Low_complexity Low_complexity 1 29 0 2 1295 189 276 51 17 chr3 93189820 93189879 -66409904 - MIRm SINE MIR -3 273 213 2 1295 1157 249 127 19 chr3 93190052 93190485 -66409298 + L1MB7 LINE L1 5587 6066 -118 2 1295 495 283 15 99 chr3 93190490 93190662 -66409121 + B3A SINE B2 28 185 -8 2 1295 258 109 22 0 chr3 93190724 93190770 -66409013 + L1MB7 LINE L1 6109 6155 -23 2 1295 288 0 0 0 chr3 93190792 93190824 -66408959 + (TC)n Simple_repeat Simple_repeat 1 32 0 2 1295 480 233 0 0 chr3 93190834 93190924 -66408859 - B1F SINE Alu -50 99 10 2 1295 281 294 33 0 chr3 93191043 93191135 -66408648 + B1F2 SINE Alu 55 149 0 2 1295 198 0 0 0 chr3 93191227 93191249 -66408534 + (CAAA)n Simple_repeat Simple_repeat 3 24 0 2 1295 312 219 114 42 chr3 93192062 93192190 -66407593 + RSINE1 SINE B4 2 135 -30 2 1296 33 25 0 0 chr3 93192197 93192237 -66407546 + AT_rich Low_complexity Low_complexity 1 40 0 2 1296 1145 62 7 0 chr3 93192258 93192402 -66407381 + B1_Mus2 SINE Alu 2 146 -1 2 1296 457 186 37 47 chr3 93192478 93192585 -66407198 - RSINE1 SINE B4 -15 150 45 2 1296 189 0 0 0 chr3 93192588 93192609 -66407174 + (TAA)n Simple_repeat Simple_repeat 1 21 0 2 1296 43 64 0 0 chr3 93192609 93192687 -66407096 + AT_rich Low_complexity Low_complexity 1 78 0 2 1296 233 360 30 70 chr3 93193026 93193226 -66406557 + MIRb SINE MIR 28 219 -49 2 1296 291 273 39 0 chr3 93193554 93193631 -66406152 - B1F1 SINE Alu -51 98 19 2 1296 729 169 87 60 chr3 93193694 93193877 -66405906 - B3 SINE B2 -25 191 4 2 1296 633 270 20 7 chr3 93193919 93194068 -66405715 + B4A SINE B4 40 190 -102 3 1296 762 194 0 14 chr3 93194075 93194216 -66405567 + B1_Mur2 SINE Alu 9 147 -2 3 1296 481 257 9 0 chr3 93194230 93194339 -66405444 + B4A SINE B4 183 292 0 3 1296 1262 118 16 5 chr3 93194622 93194809 -66404974 + B2_Mm2 SINE B2 1 189 -6 3 1296 1262 118 16 5 chr3 93194996 93195183 -66404600 + B2_Mm2 SINE B2 1 189 -6 3 1296 455 259 38 0 chr3 93195515 93195628 -66404155 + B1F SINE Alu 1 127 0 3 1296 245 337 0 22 chr3 93195645 93195736 -66404047 + GA-rich Low_complexity Low_complexity 3 91 0 3 1296 205 345 49 25 chr3 93195736 93195920 -66403863 + MIRc SINE MIR 18 201 -7 3 1296 1175 68 0 0 chr3 93196410 93196556 -66403227 - B1_Mus2 SINE Alu 0 147 2 3 1296 683 215 20 27 chr3 93196807 93196955 -66402828 + B1_Mus1 SINE Alu 2 148 0 3 1296 230 128 43 0 chr3 93196957 93197004 -66402779 + (CGAAA)n Simple_repeat Simple_repeat 3 51 0 3 1296 207 162 0 0 chr3 93198839 93198876 -66400907 + CT-rich Low_complexity Low_complexity 3 39 0 3 1296 707 266 59 0 chr3 93203446 93203649 -66396134 + B3 SINE B2 2 216 0 3 1296 590 226 88 0 chr3 93203696 93203833 -66395950 + B1F SINE Alu 1 149 0 3 1296 2113 82 25 0 chr3 93204033 93204315 -66395468 + L1_Mus1 LINE L1 6273 6561 -6 3 1296 2904 125 28 28 chr3 93204354 93204824 -66394959 - Lx4A LINE L1 -164 6894 6425 3 1296 198 0 0 0 chr3 93205247 93205269 -66394514 + (A)n Simple_repeat Simple_repeat 1 22 0 3 1296 1175 61 7 0 chr3 93205631 93205778 -66394005 - B1_Mus1 SINE Alu 0 148 1 3 1296 23 0 0 0 chr3 93205796 93205819 -66393964 + AT_rich Low_complexity Low_complexity 1 23 0 3 1296 639 57 0 0 chr3 93205830 93205918 -66393865 + (TAGA)n Simple_repeat Simple_repeat 3 90 0 3 1296 273 240 92 20 chr3 93206341 93206439 -66393344 + RLTR23 LTR ERV1 325 429 -1 3 1296 578 109 235 0 chr3 93206526 93206645 -66393138 + B1_Mus2 SINE Alu 1 147 0 3 1296 543 69 0 0 chr3 93206646 93206718 -66393065 + (GAAAA)n Simple_repeat Simple_repeat 2 73 0 3 1296 198 118 0 0 chr3 93207057 93207091 -66392692 + (A)n Simple_repeat Simple_repeat 1 34 0 3 1296 1657 42 0 0 chr3 93207323 93207514 -66392269 + B2_Mm1a SINE B2 3 193 0 3 1296 545 268 32 92 chr3 93207514 93207569 -66392214 - Lx7 LINE L1 -334 7362 7306 3 1296 1175 69 0 0 chr3 93207569 93207713 -66392070 + B1_Mus2 SINE Alu 4 147 0 3 1296 545 268 32 92 chr3 93207713 93207908 -66391875 - Lx7 LINE L1 -391 7305 7127 3 1296 348 64 0 0 chr3 93208240 93208287 -66391496 + (TC)n Simple_repeat Simple_repeat 2 48 0 3 1296 390 21 0 0 chr3 93208287 93208334 -66391449 + (CA)n Simple_repeat Simple_repeat 1 47 0 3 1296 685 245 47 11 chr3 93208587 93208777 -66391006 + B3A SINE B2 2 198 0 3 1296 428 275 126 59 chr3 93208858 93209082 -66390701 + L1MA9 LINE L1 5070 5337 -819 3 1296 1313 88 0 93 chr3 93209082 93209296 -66390487 + B2_Mm2 SINE B2 1 194 -1 3 1296 799 267 135 99 chr3 93209296 93209607 -66390176 + L1MA9 LINE L1 5320 5652 -504 3 1296 1226 34 0 7 chr3 93209607 93209755 -66390028 + B1_Mm SINE Alu 1 147 0 3 1296 799 280 101 82 chr3 93209755 93209951 -66389832 + L1MA9 LINE L1 5653 5853 -459 3 1296 1108 116 11 37 chr3 93209951 93210139 -66389644 + B2_Mm2 SINE B2 1 183 -12 3 1296 1081 93 0 0 chr3 93210139 93210277 -66389506 + B1_Mus1 SINE Alu 1 139 -9 3 1296 243 0 0 0 chr3 93210277 93210304 -66389479 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3 1296 799 280 101 82 chr3 93210304 93210768 -66389015 + L1MA9 LINE L1 5854 6309 -3 3 1296 181 0 0 65 chr3 93211523 93211554 -66388229 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 3 1296 639 102 284 0 chr3 93211939 93212066 -66387717 + Lx9 LINE L1 7404 7566 -78 3 1296 350 305 148 11 chr3 93212466 93212655 -66387128 - MIR SINE MIR -35 227 13 3 1296 202 339 68 38 chr3 93212744 93212980 -66386803 - L2c LINE L2 -43 3344 3102 3 1296 803 70 107 15 chr3 93213886 93214017 -66385766 + B1_Mus1 SINE Alu 6 148 0 3 1296 195 65 0 61 chr3 93214017 93214059 -66385724 + (CAAA)n Simple_repeat Simple_repeat 3 42 0 3 1296 1055 127 0 6 chr3 93214059 93214233 -66385550 + (GGAAA)n Simple_repeat Simple_repeat 3 175 0 3 1296 195 65 0 61 chr3 93214233 93214239 -66385544 + (CAAA)n Simple_repeat Simple_repeat 3 8 0 3 1296 1807 182 45 50 chr3 93214311 93214711 -66385072 + RMER10B LTR ERVL 1 398 0 3 1296 540 0 0 0 chr3 93214917 93214977 -66384806 + (GAAA)n Simple_repeat Simple_repeat 1 60 0 3 1296 730 111 35 49 chr3 93214999 93215028 -66384755 + RMER10B LTR ERVL 1 23 -375 3 1296 198 0 0 0 chr3 93215028 93215050 -66384733 + (CA)n Simple_repeat Simple_repeat 1 22 0 3 1296 730 111 35 49 chr3 93215050 93215162 -66384621 + RMER10B LTR ERVL 24 140 -258 3 1296 417 39 0 0 chr3 93215200 93215251 -66384532 + (TC)n Simple_repeat Simple_repeat 1 51 0 3 1296 822 132 19 44 chr3 93215255 93215414 -66384369 + RMER10B LTR ERVL 244 398 0 3 1296 395 350 74 9 chr3 93216257 93216473 -66383310 - L2a LINE L2 -204 3222 2993 3 1296 469 252 63 0 chr3 93216506 93216617 -66383166 + B1_Mur1 SINE Alu 6 123 -26 3 1296 3158 288 119 60 chr3 93216623 93217519 -66382264 + Lx8 LINE L1 5518 6515 -958 3 1296 1220 42 0 0 chr3 93217519 93217662 -66382121 + B1_Mus1 SINE Alu 2 144 -4 3 1296 3158 306 70 65 chr3 93217662 93218464 -66381319 + Lx8 LINE L1 6516 7289 -184 3 1296 2730 167 85 4 chr3 93218488 93219004 -66380779 + Lx9 LINE L1 6923 7480 -164 3 1296 522 0 0 0 chr3 93219004 93219062 -66380721 + (TC)n Simple_repeat Simple_repeat 1 58 0 3 1296 402 39 0 0 chr3 93219062 93219113 -66380670 + (CA)n Simple_repeat Simple_repeat 1 52 0 3 1296 405 0 0 0 chr3 93219113 93219157 -66380626 + (GA)n Simple_repeat Simple_repeat 2 46 0 3 1296 24 0 0 0 chr3 93219644 93219668 -66380115 + AT_rich Low_complexity Low_complexity 1 24 0 3 1296 452 18 18 0 chr3 93219788 93219845 -66379938 + (TATG)n Simple_repeat Simple_repeat 3 60 0 3 1296 588 216 117 6 chr3 93219898 93220061 -66379722 - L1MA9 LINE L1 -135 6177 5997 3 1296 2653 270 111 77 chr3 93220107 93220167 -66379616 - L1M3e LINE L1 -2133 4967 4919 3 1296 838 173 0 51 chr3 93220167 93220325 -66379458 - B1_Mur4 SINE Alu 0 150 1 3 1296 2653 270 111 77 chr3 93220325 93220839 -66378944 - L1M3e LINE L1 -2182 4918 4437 3 1296 432 0 0 0 chr3 93220839 93220887 -66378896 + (TG)n Simple_repeat Simple_repeat 2 49 0 3 1296 2653 270 111 77 chr3 93220887 93221164 -66378619 - L1M3e LINE L1 -2664 4436 4183 3 1296 1845 172 29 34 chr3 93221164 93221574 -66378209 - RMER17C LTR ERVK -2 408 1 3 1296 2653 271 114 74 chr3 93221574 93222618 -66377165 - L1M3e LINE L1 -2918 4182 2998 3 1296 204 40 0 0 chr3 93222628 93222653 -66377130 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 3 1296 684 111 31 8 chr3 93222671 93222798 -66376985 - Lx2 LINE L1 -23 6974 6845 3 1296 8396 106 7 4 chr3 93222794 93223981 -66375802 - Lx2 LINE L1 -265 6732 5573 3 1296 736 234 122 20 chr3 93224083 93224279 -66375504 + B3 SINE B2 1 216 0 3 1296 588 206 7 52 chr3 93224379 93224400 -66375383 + ID_B1 SINE B4 78 224 0 3 1296 1020 45 0 0 chr3 93224400 93224533 -66375250 + B1_Mm SINE Alu 15 147 0 3 1296 188 226 37 19 chr3 93225304 93225358 -66374425 - L2c LINE L2 -17 3370 3316 3 1296 444 278 122 22 chr3 93225374 93225554 -66374229 - L1M3e LINE L1 -4659 2449 2252 3 1296 523 267 8 8 chr3 93227038 93227170 -66372613 - ORR1D2 LTR MaLR -76 294 163 3 1296 490 337 75 70 chr3 93227172 93227732 -66372051 - L1M3e LINE L1 -4981 2049 1571 3 1296 208 182 36 72 chr3 93228517 93228600 -66371183 + C-rich Low_complexity Low_complexity 1 80 0 3 1296 1295 106 22 0 chr3 93228755 93228934 -66370849 + B2_Mm2 SINE B2 2 184 -11 3 1296 353 162 15 0 chr3 93228959 93229027 -66370756 - RLTR12B LTR ERVK -459 69 1 3 1296 281 269 0 0 chr3 93229027 93229105 -66370678 - MLT2B3 LTR ERVL -475 79 2 3 1296 879 220 80 0 chr3 93229909 93230109 -66369674 - B3 SINE B2 0 216 1 3 1296 382 362 6 6 chr3 93230118 93230279 -66369504 + L2c LINE L2 2307 2467 -952 3 1296 1132 74 0 26 chr3 93230371 93230523 -66369260 + B1_Mus1 SINE Alu 1 148 0 3 1296 258 277 12 35 chr3 93230841 93230927 -66368856 + MLT1A1 LTR MaLR 321 404 -4 3 1296 1372 83 5 30 chr3 93231199 93231397 -66368386 - B2_Mm2 SINE B2 0 195 3 3 1296 235 381 81 0 chr3 93231658 93231831 -66367952 + L2c LINE L2 3182 3368 -19 3 1296 261 0 0 0 chr3 93232446 93232475 -66367308 + (TAAA)n Simple_repeat Simple_repeat 1 29 0 3 1296 192 325 12 0 chr3 93233714 93233794 -66365989 - MIRb SINE MIR -100 168 88 3 1296 1209 54 0 0 chr3 93234468 93234615 -66365168 - B1_Mus2 SINE Alu 0 147 1 3 1296 408 318 22 71 chr3 93235344 93235527 -66364256 + MIRb SINE MIR 26 199 -69 3 1296 294 227 91 0 chr3 93235543 93235609 -66364174 - ID4_ SINE ID -10 73 2 3 1296 30 0 0 0 chr3 93238193 93238223 -66361560 + AT_rich Low_complexity Low_complexity 1 30 0 3 1296 543 255 89 16 chr3 93238371 93238562 -66361221 + MER2 DNA MER2_type 141 345 0 3 1296 507 123 0 0 chr3 93238830 93238911 -66360872 + (TTTC)n Simple_repeat Simple_repeat 2 82 0 3 1296 207 0 0 0 chr3 93238919 93238942 -66360841 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 3 1296 1169 48 0 7 chr3 93238942 93239081 -66360702 - B1_Mm SINE Alu -8 139 1 3 1296 21 0 0 0 chr3 93239717 93239738 -66360045 + AT_rich Low_complexity Low_complexity 1 21 0 3 1296 195 42 0 0 chr3 93239765 93239789 -66359994 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 3 1296 551 316 0 0 chr3 93241237 93241376 -66358407 + RSINE1 SINE B4 7 145 -20 3 1296 234 0 0 0 chr3 93241378 93241404 -66358379 + (CA)n Simple_repeat Simple_repeat 1 26 0 3 1296 725 257 7 0 chr3 93241635 93241787 -66357996 + RSINE1 SINE B4 3 155 -10 3 1296 23 0 0 0 chr3 93241791 93241814 -66357969 + AT_rich Low_complexity Low_complexity 1 23 0 3 1296 610 250 0 21 chr3 93242043 93242186 -66357597 - B1_Mur1 SINE Alu 0 149 10 3 1296 306 245 107 67 chr3 93242214 93242392 -66357391 - B3 SINE B2 -7 188 1 3 1296 267 189 0 0 chr3 93242506 93242559 -66357224 + GA-rich Low_complexity Low_complexity 3 55 0 3 1296 297 68 0 0 chr3 93242796 93242840 -66356943 + (CA)n Simple_repeat Simple_repeat 2 45 0 3 1296 348 24 0 0 chr3 93242854 93242895 -66356888 + (GA)n Simple_repeat Simple_repeat 1 41 0 3 1296 189 0 0 0 chr3 93243335 93243356 -66356427 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 4 1296 441 54 0 0 chr3 93244040 93244096 -66355687 + (GAAAA)n Simple_repeat Simple_repeat 4 59 0 4 1296 368 320 37 37 chr3 93244153 93244340 -66355443 + B3A SINE B2 1 187 -8 4 1296 593 246 36 0 chr3 93244890 93245028 -66354755 - B1_Mur1 SINE Alu -6 143 1 4 1296 249 281 16 0 chr3 93245380 93245444 -66354339 - ID4_ SINE ID -14 69 5 4 1296 1367 88 5 25 chr3 93246991 93247190 -66352593 - B2_Mm2 SINE B2 0 195 1 4 1296 244 345 0 0 chr3 93248822 93248964 -66350819 + (CAG)n Simple_repeat Simple_repeat 3 144 0 4 1296 1234 41 0 0 chr3 93253192 93253338 -66346445 + B1_Mm SINE Alu 2 147 0 4 1296 216 0 0 0 chr3 93253338 93253362 -66346421 + (A)n Simple_repeat Simple_repeat 1 24 0 4 1296 3150 61 2 25 chr3 93253586 93253991 -66345792 + MTA_Mm LTR MaLR 1 396 0 4 1296 1110 75 0 26 chr3 93254187 93254338 -66345445 + B1_Mus2 SINE Alu 1 147 0 4 1296 645 246 14 0 chr3 93254618 93254760 -66345023 + B1_Mur3 SINE Alu 1 144 -5 4 1296 1116 298 27 19 chr3 93255433 93255799 -66343984 - RMER15 LTR ERVL 0 575 207 4 1296 296 208 13 0 chr3 93255870 93255947 -66343836 + (CAGAGA)n Simple_repeat Simple_repeat 2 79 0 4 1296 660 260 91 71 chr3 93255951 93256303 -66343480 + MLT1B LTR MaLR 32 390 0 4 1296 194 312 0 13 chr3 93256681 93256722 -66343061 - L2a LINE L2 -3 3423 3383 4 1296 222 37 0 0 chr3 93256722 93256749 -66343034 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 4 1296 194 312 0 13 chr3 93256749 93256785 -66342998 - L2a LINE L2 -44 3382 3347 4 1296 2200 161 60 0 chr3 93256835 93257220 -66342563 - Lx2 LINE L1 -1 6996 6589 4 1296 6106 102 24 17 chr3 93257220 93258101 -66341682 + Lx2 LINE L1 5695 6581 -416 4 1296 897 139 7 35 chr3 93258571 93258713 -66341070 + B1_Mur3 SINE Alu 2 139 -10 4 1296 405 0 0 0 chr3 93258713 93258758 -66341025 + (CA)n Simple_repeat Simple_repeat 2 46 0 4 1296 222 274 0 0 chr3 93258759 93258810 -66340973 + GA-rich Low_complexity Low_complexity 1 51 0 4 1296 348 71 86 0 chr3 93258810 93258880 -66340903 + (CAGAGA)n Simple_repeat Simple_repeat 2 77 0 4 1296 543 273 45 0 chr3 93259713 93259845 -66339938 + B1_Mur2 SINE Alu 1 138 -11 4 1296 199 0 0 61 chr3 93259845 93259878 -66339905 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 4 1296 2289 154 3 0 chr3 93260254 93260638 -66339145 - Lx3C LINE L1 -1602 4275 3891 4 1296 9230 130 33 50 chr3 93260652 93260902 -66338881 + Lx3C LINE L1 4286 4528 -1358 4 1296 1681 31 0 0 chr3 93260902 93261094 -66338689 - B2_Mm1a SINE B2 0 193 2 4 1296 9230 130 33 50 chr3 93261094 93261952 -66337831 + Lx3C LINE L1 4529 5367 -519 4 1296 1095 64 43 0 chr3 93261952 93262092 -66337691 + B1_Mus1 SINE Alu 1 146 -2 4 1296 198 0 0 0 chr3 93262092 93262114 -66337669 + (TTAA)n Simple_repeat Simple_repeat 1 22 0 4 1296 9230 136 35 45 chr3 93262114 93262776 -66337007 + Lx3C LINE L1 5368 6028 -948 4 1296 879 102 0 0 chr3 93262776 93262904 -66336879 + (GA)n Simple_repeat Simple_repeat 2 129 0 4 1296 7386 156 41 27 chr3 93262904 93263830 -66335953 + Lx3C LINE L1 6029 6974 -2 4 1296 207 139 0 0 chr3 93264137 93264173 -66335610 + (TTCC)n Simple_repeat Simple_repeat 3 38 0 4 1296 401 188 43 6 chr3 93264191 93264291 -66335492 - B1F2 SINE Alu -20 107 6 4 1296 417 123 0 0 chr3 93264471 93264536 -66335247 + (TG)n Simple_repeat Simple_repeat 2 66 0 4 1296 958 260 36 36 chr3 93264539 93264814 -66334969 - B4 SINE B4 -12 280 6 4 1296 456 278 0 18 chr3 93264957 93265067 -66334716 - PB1D10 SINE Alu -1 116 9 4 1296 262 246 0 7 chr3 93265015 93265084 -66334699 - B4A SINE B4 -147 145 80 4 1296 410 298 195 54 chr3 93265170 93265267 -66334516 + MLT1A0 LTR MaLR 5 112 -253 4 1296 2872 129 7 5 chr3 93265267 93265687 -66334096 - MTC LTR MaLR 0 421 1 4 1296 410 298 195 54 chr3 93265687 93265806 -66333977 + MLT1A0 LTR MaLR 113 260 -105 4 1296 4136 64 60 8 chr3 93265806 93266338 -66333445 + LTRIS2 LTR ERV1 5 564 0 4 1296 410 315 120 88 chr3 93266338 93266442 -66333341 + MLT1A0 LTR MaLR 261 373 -17 4 1296 630 258 18 36 chr3 93266526 93266691 -66333092 + RSINE1 SINE B4 4 165 0 4 1296 186 143 0 0 chr3 93266694 93266729 -66333054 + (CA)n Simple_repeat Simple_repeat 2 36 0 4 1296 1105 74 0 39 chr3 93267585 93267739 -66332044 + B1_Mus1 SINE Alu 1 148 0 4 1296 221 272 35 69 chr3 93268353 93268369 -66331414 - RSINE1 SINE B4 -4 161 149 4 1296 374 0 22 0 chr3 93268369 93268415 -66331368 + (TG)n Simple_repeat Simple_repeat 2 48 0 4 1296 427 309 80 47 chr3 93268415 93268662 -66331121 - B4 SINE B4 -12 280 33 4 1296 342 0 0 0 chr3 93269058 93269096 -66330687 + (GCTG)n Simple_repeat Simple_repeat 1 38 0 4 1296 21 0 0 0 chr3 93269765 93269786 -66329997 + AT_rich Low_complexity Low_complexity 1 21 0 4 1296 1184 74 0 0 chr3 93270300 93270448 -66329335 + B1_Mus1 SINE Alu 1 148 0 4 1296 209 0 97 0 chr3 93270448 93270479 -66329304 + (CAAAA)n Simple_repeat Simple_repeat 5 38 0 4 1296 312 233 87 87 chr3 93270502 93270629 -66329154 + B3A SINE B2 4 130 -68 4 1296 215 370 98 6 chr3 93271095 93271269 -66328514 + MIRb SINE MIR 27 216 -52 4 1296 24 67 0 0 chr3 93273929 93273974 -66325809 + AT_rich Low_complexity Low_complexity 1 45 0 4 1296 24 53 0 0 chr3 93276106 93276144 -66323639 + AT_rich Low_complexity Low_complexity 1 38 0 4 1296 192 40 0 0 chr3 93276205 93276230 -66323553 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 4 1296 787 277 55 65 chr3 93276251 93276541 -66323242 - B4A SINE B4 -5 287 1 4 1296 363 44 0 0 chr3 93276637 93276682 -66323101 + (CA)n Simple_repeat Simple_repeat 2 46 0 4 1296 485 239 168 34 chr3 93277056 93277228 -66322555 - B3 SINE B2 -10 185 14 4 1296 449 346 0 42 chr3 93277998 93278140 -66321643 + RSINE1 SINE B4 3 138 -27 4 1296 22 35 0 0 chr3 93278191 93278220 -66321563 + AT_rich Low_complexity Low_complexity 1 29 0 4 1296 7950 61 2 10 chr3 93278778 93279928 -66319855 + L1_Mus2 LINE L1 5426 6566 0 4 1296 769 254 35 0 chr3 93279946 93280119 -66319664 + B3A SINE B2 2 180 -18 4 1296 270 337 22 0 chr3 93280980 93281072 -66318711 - MIRm SINE MIR -16 260 167 4 1296 849 264 54 70 chr3 93281483 93281876 -66317907 + RLTR26 LTR ERVK 1 417 -225 4 1296 344 209 11 55 chr3 93281913 93282004 -66317779 + B3 SINE B2 130 216 0 4 1296 384 134 0 0 chr3 93282712 93282779 -66317004 - B2_Mm2 SINE B2 -116 79 13 4 1296 1690 55 37 0 chr3 93282780 93283226 -66316557 + L1_Mus2 LINE L1 6341 6566 0 4 1296 255 44 22 0 chr3 93283408 93283453 -66316330 - L1Md_F2 LINE L1 -2 6580 6535 4 1296 332 287 116 0 chr3 93283509 93283638 -66316145 - B1F SINE Alu 0 149 6 4 1296 576 0 0 0 chr3 93284494 93284558 -66315225 + (TG)n Simple_repeat Simple_repeat 2 65 0 4 1296 254 329 94 23 chr3 93284564 93284735 -66315048 - L2a LINE L2 -308 3118 2936 4 1296 1274 199 159 31 chr3 93284877 93285203 -66314580 - ORR1D1 LTR MaLR -4 370 3 4 1296 256 348 6 42 chr3 93285652 93285820 -66313963 + GA-rich Low_complexity Low_complexity 2 163 0 4 1296 225 0 0 0 chr3 93287097 93287122 -66312661 + (T)n Simple_repeat Simple_repeat 1 25 0 4 1296 1185 68 0 0 chr3 93287122 93287268 -66312515 - B1_Mus2 SINE Alu 0 147 2 4 1296 454 223 124 0 chr3 93287430 93287551 -66312232 - B4 SINE B4 0 292 157 4 1296 282 56 0 0 chr3 93287596 93287632 -66312151 + (TTTTG)n Simple_repeat Simple_repeat 2 37 0 4 1296 618 264 7 0 chr3 93287651 93287795 -66311988 - B1_Mur1 SINE Alu -2 147 3 4 1296 340 300 199 7 chr3 93287795 93287852 -66311931 - B4 SINE B4 -204 88 5 4 1296 24 0 0 0 chr3 93287861 93287885 -66311898 + AT_rich Low_complexity Low_complexity 1 24 0 4 1296 598 266 91 0 chr3 93287936 93288090 -66311693 - ORR1D2 LTR MaLR 0 370 203 4 1296 269 282 16 53 chr3 93288096 93288283 -66311500 + Lx8 LINE L1 2874 3053 -2827 4 1296 1238 304 106 43 chr3 93288278 93289246 -66310537 + Lx8 LINE L1 5247 6254 -1219 4 1296 804 176 29 0 chr3 93289312 93289448 -66310335 - B1_Mm SINE Alu -7 140 1 4 1296 904 264 5 5 chr3 93289546 93289759 -66310024 + Lx8 LINE L1 6687 6899 -574 4 1296 464 237 102 42 chr3 93289859 93290026 -66309757 - L1_Mur3 LINE L1 -664 5216 5040 4 1296 529 308 63 0 chr3 93290282 93290441 -66309342 + B3 SINE B2 10 178 -38 4 1296 1172 89 58 23 chr3 93290690 93290863 -66308920 + B2_Mm1t SINE B2 1 179 -14 4 1296 290 84 419 0 chr3 93290909 93291002 -66308781 + B2_Mm2 SINE B2 57 188 -7 4 1296 673 287 72 85 chr3 93291228 93291471 -66308312 + L1MA10 LINE L1 5845 6097 -237 4 1296 707 156 94 22 chr3 93291471 93291609 -66308174 + B1_Mur3 SINE Alu 2 149 0 4 1296 673 287 72 85 chr3 93291609 93291826 -66307957 + L1MA10 LINE L1 6098 6299 -35 4 1296 615 257 94 0 chr3 93291878 93292049 -66307734 + ID_B1 SINE B4 3 189 -35 4 1296 327 244 69 11 chr3 93292378 93292465 -66307318 + B1F SINE Alu 47 138 -11 4 1296 805 241 44 0 chr3 93292605 93292808 -66306975 + B4 SINE B4 3 214 -78 4 1296 1061 118 18 0 chr3 93292914 93293083 -66306700 + B2_Mm1t SINE B2 1 172 -21 4 1296 318 163 148 0 chr3 93293155 93293268 -66306515 + B2_Mm2 SINE B2 47 192 -1 4 1296 1156 54 0 26 chr3 93293850 93294002 -66305781 + B1_Mus1 SINE Alu 1 148 0 4 1296 245 391 0 6 chr3 93294027 93294202 -66305581 + (TA)n Simple_repeat Simple_repeat 2 175 0 4 1296 210 37 0 0 chr3 93294227 93294254 -66305529 + (TG)n Simple_repeat Simple_repeat 1 27 0 4 1296 228 67 0 0 chr3 93294412 93294442 -66305341 + (CAAAA)n Simple_repeat Simple_repeat 3 32 0 4 1296 6783 178 46 50 chr3 93294731 93295240 -66304543 - RLTR21 LTR ERVK 0 1572 1094 4 1296 420 20 0 0 chr3 93295240 93295289 -66304494 + (CATA)n Simple_repeat Simple_repeat 2 50 0 4 1296 6783 178 46 50 chr3 93295289 93296356 -66303427 - RLTR21 LTR ERVK -479 1093 1 4 1296 422 269 13 65 chr3 93296489 93296505 -66303278 + ID_B1 SINE B4 77 219 -1 4 1296 626 246 15 7 chr3 93296505 93296640 -66303143 + B1F SINE Alu 9 144 -5 4 1296 1177 111 21 0 chr3 93296649 93296839 -66302944 + B2_Mm2 SINE B2 2 195 0 4 1296 260 245 0 0 chr3 93296839 93296888 -66302895 + polypurine Low_complexity Low_complexity 3 51 0 4 1296 189 107 0 0 chr3 93297346 93297374 -66302409 + (A)n Simple_repeat Simple_repeat 1 28 0 5 1296 1433 45 22 22 chr3 93298784 93298967 -66300816 + B2_Mm2 SINE B2 1 183 -12 5 1296 28 0 0 0 chr3 93299000 93299028 -66300755 + AT_rich Low_complexity Low_complexity 1 28 0 5 1296 234 0 0 0 chr3 93299029 93299055 -66300728 + (GAAA)n Simple_repeat Simple_repeat 3 28 0 5 1296 1011 156 0 0 chr3 93299055 93299233 -66300550 + GA-rich Low_complexity Low_complexity 2 180 0 5 1296 1015 227 10 0 chr3 93300045 93300248 -66299535 + B3 SINE B2 12 216 0 5 1296 186 118 0 0 chr3 93300770 93300804 -66298979 + (TC)n Simple_repeat Simple_repeat 1 34 0 5 1296 264 289 20 20 chr3 93301576 93301675 -66298108 + MER5A DNA MER1_type 90 188 -1 5 1296 1738 137 137 3 chr3 93301839 93302182 -66297601 + ORR1B1 LTR MaLR 1 389 -5 5 1296 741 239 69 155 chr3 93302205 93302273 -66297510 + B4A SINE B4 3 65 -227 5 1296 219 36 0 0 chr3 93302273 93302301 -66297482 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 5 1296 741 239 69 155 chr3 93302301 93302461 -66297322 + B4A SINE B4 66 230 -62 5 1296 647 278 15 54 chr3 93302461 93302666 -66297117 + B3A SINE B2 2 198 0 5 1296 741 239 69 155 chr3 93302666 93302753 -66297030 + B4A SINE B4 231 292 0 5 1296 418 158 66 0 chr3 93302905 93302981 -66296802 + BC1_Mm scRNA scRNA 1 81 -71 5 1296 294 73 0 0 chr3 93302985 93303026 -66296757 + (CATA)n Simple_repeat Simple_repeat 2 42 0 5 1296 694 267 19 24 chr3 93303111 93303318 -66296465 - B3 SINE B2 -10 206 1 5 1296 558 0 0 0 chr3 93303324 93303386 -66296397 + (TC)n Simple_repeat Simple_repeat 2 63 0 5 1296 333 0 0 0 chr3 93303386 93303422 -66296361 + (TG)n Simple_repeat Simple_repeat 2 38 0 5 1296 372 189 0 0 chr3 93303785 93303859 -66295924 + T-rich Low_complexity Low_complexity 1 74 0 5 1296 1227 61 0 0 chr3 93303859 93304007 -66295776 - B1_Mus1 SINE Alu 0 148 1 5 1296 1137 255 102 14 chr3 93305219 93305581 -66294202 + MTD LTR MaLR 10 403 -16 5 1296 3055 45 55 0 chr3 93305661 93306040 -66293743 - MTB LTR MaLR 0 400 1 5 1296 2967 170 53 12 chr3 93306052 93306613 -66293170 - Lx4A LINE L1 0 7058 6475 5 1296 1513 115 37 4 chr3 93306618 93306862 -66292921 - L1_Mur2 LINE L1 -1107 4770 4519 5 1296 2156 60 25 0 chr3 93306856 93307139 -66292644 - L1_Mur2 LINE L1 -3113 2764 2475 5 1296 540 241 58 90 chr3 93307387 93307610 -66292173 + B3 SINE B2 1 216 0 5 1296 402 301 14 70 chr3 93308144 93308287 -66291496 - ID_B1 SINE B4 -4 220 86 5 1296 663 284 108 156 chr3 93308480 93308698 -66291085 + Looper DNA PiggyBac 260 488 -1070 5 1296 363 44 0 0 chr3 93308698 93308743 -66291040 + (TG)n Simple_repeat Simple_repeat 2 46 0 5 1296 663 284 108 156 chr3 93308743 93309640 -66290143 + Looper DNA PiggyBac 489 1322 -236 5 1296 468 0 0 0 chr3 93310719 93310771 -66289012 + (TG)n Simple_repeat Simple_repeat 2 53 0 5 1296 220 143 245 0 chr3 93310788 93310837 -66288946 - B1_Mur4 SINE Alu -33 117 57 5 1296 417 250 26 18 chr3 93311572 93311686 -66288097 + PB1D10 SINE Alu 3 117 0 5 1296 419 0 20 0 chr3 93312843 93312894 -66286889 + (TAGA)n Simple_repeat Simple_repeat 3 54 0 5 1296 629 194 79 0 chr3 93313681 93313820 -66285963 + B3 SINE B2 1 150 -66 5 1296 246 32 0 0 chr3 93313828 93313859 -66285924 + (CA)n Simple_repeat Simple_repeat 1 31 0 5 1296 32 0 0 0 chr3 93313860 93313892 -66285891 + AT_rich Low_complexity Low_complexity 1 32 0 5 1296 1907 154 92 76 chr3 93313899 93314335 -66285448 - RLTR24 LTR ERV1 -2 527 85 5 1296 882 59 0 0 chr3 93314312 93314431 -66285352 + B1_Mus2 SINE Alu 29 147 0 5 1296 289 252 35 106 chr3 93315339 93315481 -66284302 - MTEb LTR MaLR -15 364 233 5 1296 309 118 0 0 chr3 93315496 93315547 -66284236 + (CA)n Simple_repeat Simple_repeat 2 52 0 5 1296 726 222 194 0 chr3 93316509 93316689 -66283094 + B3 SINE B2 2 216 0 5 1296 212 119 43 29 chr3 93317450 93317519 -66282264 + T-rich Low_complexity Low_complexity 3 72 0 5 1296 745 168 14 28 chr3 93317530 93317671 -66282112 - B1_Mur3 SINE Alu -9 140 2 5 1296 240 35 0 0 chr3 93317859 93317888 -66281895 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 5 1296 981 140 0 0 chr3 93319282 93319425 -66280358 - B1_Mur4 SINE Alu -7 143 1 5 1296 1284 220 139 28 chr3 93320314 93320674 -66279109 - MTD LTR MaLR 0 419 20 5 1296 995 136 0 7 chr3 93320986 93321134 -66278649 + B1_Mus1 SINE Alu 2 148 0 5 1296 360 0 0 0 chr3 93321666 93321706 -66278077 + (CA)n Simple_repeat Simple_repeat 2 41 0 5 1296 457 309 128 25 chr3 93322058 93322300 -66277483 - MLT1M LTR MaLR -376 296 30 5 1296 196 271 0 0 chr3 93322553 93322601 -66277182 + L2a LINE L2 3355 3402 -24 5 1296 591 308 7 0 chr3 93322728 93322874 -66276909 - RSINE1 SINE B4 -17 148 2 5 1297 639 264 0 14 chr3 93323316 93323462 -66276321 - B1F SINE Alu -5 144 1 5 1297 204 269 62 31 chr3 93323666 93323762 -66276021 - MIRb SINE MIR -122 146 48 5 1297 471 264 39 0 chr3 93323941 93324070 -66275713 + B1F SINE Alu 11 144 -5 5 1297 21 0 0 0 chr3 93324352 93324373 -66275410 + GC_rich Low_complexity Low_complexity 1 21 0 5 1297 368 289 107 61 chr3 93325246 93325526 -66274257 + MER58B DNA MER1_type 49 341 0 5 1297 1241 14 7 0 chr3 93326261 93326403 -66273380 + B1_Mus2 SINE Alu 5 147 0 5 1297 315 150 0 0 chr3 93326405 93326465 -66273318 + (A)n Simple_repeat Simple_repeat 1 60 0 5 1297 180 0 0 0 chr3 93326603 93326623 -66273160 + (CATA)n Simple_repeat Simple_repeat 3 22 0 5 1297 340 77 39 0 chr3 93328327 93328379 -66271404 + RMER6A LTR ERVK 57 110 -646 5 1297 2285 158 8 16 chr3 93328435 93328916 -66270867 + RMER6A LTR ERVK 299 734 -22 5 1297 882 100 0 0 chr3 93328926 93329066 -66270717 + (TG)n Simple_repeat Simple_repeat 2 141 0 5 1297 720 118 0 0 chr3 93329101 93329237 -66270546 + (TG)n Simple_repeat Simple_repeat 2 137 0 5 1297 801 116 0 0 chr3 93329272 93329418 -66270365 + (TG)n Simple_repeat Simple_repeat 2 147 0 5 1297 984 79 0 0 chr3 93329453 93329605 -66270178 + (TG)n Simple_repeat Simple_repeat 2 153 0 5 1297 291 28 0 0 chr3 93331060 93331096 -66268687 + (TTTG)n Simple_repeat Simple_repeat 3 38 0 5 1297 388 265 78 29 chr3 93331674 93331882 -66267901 - RLTR12B LTR ERVK -26 501 301 5 1297 21 0 0 0 chr3 93331886 93331907 -66267876 + AT_rich Low_complexity Low_complexity 1 21 0 5 1297 300 233 57 57 chr3 93331950 93332109 -66267674 - RLTR15 LTR ERVK -68 291 133 5 1297 382 148 117 27 chr3 93332197 93332308 -66267475 - RLTR15 LTR ERVK -238 121 1 5 1297 473 267 124 36 chr3 93332345 93332594 -66267189 - RLTR12B LTR ERVK -216 312 42 5 1297 236 262 216 42 chr3 93332655 93332942 -66266841 + L2 LINE L2 2435 2771 -648 5 1297 343 218 13 13 chr3 93333324 93333403 -66266380 + RSINE1 SINE B4 83 161 -4 5 1297 720 204 82 16 chr3 93333528 93333712 -66266071 + B3A SINE B2 1 196 -2 5 1297 1164 98 75 0 chr3 93333722 93333896 -66265887 + B2_Mm2 SINE B2 1 187 -8 5 1297 228 188 21 0 chr3 93333914 93333962 -66265821 - PB1D10 SINE Alu -20 97 49 5 1297 275 0 29 0 chr3 93333977 93334012 -66265771 + (TTTC)n Simple_repeat Simple_repeat 2 37 0 5 1297 511 200 99 49 chr3 93334872 93335014 -66264769 + B1F2 SINE Alu 1 149 0 5 1297 21 0 0 0 chr3 93335088 93335109 -66264674 + AT_rich Low_complexity Low_complexity 1 21 0 5 1297 949 141 10 36 chr3 93335654 93335846 -66263937 + MTC LTR MaLR 10 196 -211 5 1297 1814 122 63 13 chr3 93335846 93336146 -66263637 + ORR1A2 LTR MaLR 11 325 -2 5 1297 1186 128 27 10 chr3 93336146 93336361 -66263422 + MTC LTR MaLR 185 406 -1 5 1297 207 0 0 0 chr3 93336516 93336539 -66263244 + (CCCCCA)n Simple_repeat Simple_repeat 2 24 0 5 1297 1577 168 105 0 chr3 93336569 93336884 -66262899 + RLTR1 LTR ERV1 277 624 0 5 1297 1183 128 28 11 chr3 93336949 93337131 -66262652 - B2_Mm2 SINE B2 -8 187 3 5 1297 757 288 120 30 chr3 93337160 93337461 -66262322 + ORR1E LTR MaLR 30 357 -2 5 1297 4425 240 44 47 chr3 93337520 93338766 -66261017 + ORR1E-int LTR MaLR 10 1251 -119 5 1297 958 103 0 0 chr3 93338766 93338902 -66260881 - L1_Mm LINE L1 -1231 4652 4517 5 1297 1298 80 57 0 chr3 93338915 93339090 -66260693 - B2_Mm1t SINE B2 -8 185 1 5 1297 306 286 28 9 chr3 93339097 93339203 -66260580 + ORR1E-int LTR MaLR 1261 1368 -2 5 1297 625 247 317 4 chr3 93339209 93339477 -66260306 + ORR1E LTR MaLR 5 356 -3 5 1297 469 293 119 4 chr3 93339486 93339712 -66260071 - L1M4 LINE L1 -589 5579 5328 5 1297 231 250 31 0 chr3 93339718 93339782 -66260001 - ID2 SINE ID -4 79 14 5 1297 315 217 29 14 chr3 93339893 93339963 -66259820 - L1M4 LINE L1 -884 5256 5186 5 1297 204 179 0 0 chr3 93339963 93340002 -66259781 + CT-rich Low_complexity Low_complexity 2 40 0 5 1297 321 265 118 0 chr3 93340317 93340419 -66259364 - PB1D10 SINE Alu -3 114 1 5 1297 387 177 72 10 chr3 93340421 93340518 -66259265 - L1M4 LINE L1 -960 5186 5084 5 1297 198 0 0 0 chr3 93341502 93341524 -66258259 + (TG)n Simple_repeat Simple_repeat 1 22 0 5 1297 1329 103 4 63 chr3 93341577 93341816 -66257967 + RMER6B LTR ERVK 3 227 -234 5 1297 540 229 14 58 chr3 93341896 93342035 -66257748 - B3 SINE B2 0 216 84 5 1297 296 286 53 38 chr3 93342239 93342424 -66257359 - MIRb SINE MIR -57 211 20 5 1297 315 0 0 0 chr3 93343151 93343186 -66256597 + (TC)n Simple_repeat Simple_repeat 1 35 0 5 1297 637 270 131 16 chr3 93343218 93343463 -66256320 - B4A SINE B4 -18 274 2 5 1297 630 201 300 7 chr3 93343607 93343900 -66255883 - MTEb LTR MaLR 0 379 1 5 1297 734 318 123 19 chr3 93344268 93344576 -66255207 - MER2 DNA MER2_type -4 341 2 5 1297 3240 232 38 45 chr3 93345026 93345853 -66253930 + RodERV21-int LTR ERV1 2 822 -4169 5 1297 2639 111 15 29 chr3 93346035 93346410 -66253373 + RLTR19-int LTR ERVK 2791 3165 -2972 5 1297 6049 63 33 10 chr3 93346410 93347198 -66252585 - RLTR13D1 LTR ERVK 0 806 1 5 1297 2639 111 15 29 chr3 93347198 93347231 -66252552 + RLTR19-int LTR ERVK 3166 3193 -2944 5 1297 279 21 20 40 chr3 93347275 93347325 -66252458 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 5 1297 270 235 0 56 chr3 93347595 93347667 -66252116 + polypurine Low_complexity Low_complexity 6 73 0 5 1297 494 80 0 202 chr3 93347669 93347712 -66252071 - MTB LTR MaLR 0 407 378 5 1297 1115 82 0 0 chr3 93347712 93347848 -66251935 + B1_Mus2 SINE Alu 1 136 -11 5 1297 219 36 0 0 chr3 93347848 93347876 -66251907 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 5 1297 494 80 0 202 chr3 93347886 93347951 -66251832 - MTB LTR MaLR -30 377 321 5 1297 1105 81 155 9 chr3 93347951 93348338 -66251445 + RLTR1B LTR ERV1 1 512 0 6 1297 2297 83 3 33 chr3 93348338 93348658 -66251125 - MTB LTR MaLR -91 309 1 5 1297 3214 206 85 4 chr3 93349198 93349289 -66250494 + Lx7 LINE L1 6614 6715 -981 6 1297 970 117 263 0 chr3 93349289 93349468 -66250315 - URR1A DNA MER1_type 0 226 1 6 1297 3214 206 85 4 chr3 93349468 93350073 -66249710 + Lx7 LINE L1 6716 7365 -331 6 1297 305 231 136 8 chr3 93350194 93350312 -66249471 + Lx7 LINE L1 7563 7695 -1 6 1297 235 248 151 62 chr3 93350310 93350456 -66249327 + Lx8 LINE L1 7306 7464 -9 6 1297 181 98 98 0 chr3 93350673 93350724 -66249059 + (CAAAC)n Simple_repeat Simple_repeat 1 56 0 6 1297 955 212 69 4 chr3 93351357 93351589 -66248194 + Lx5 LINE L1 6799 7045 -5 6 1297 25 0 0 0 chr3 93351596 93351621 -66248162 + AT_rich Low_complexity Low_complexity 1 25 0 6 1297 359 183 182 48 chr3 93351945 93352071 -66247712 + B3 SINE B2 65 207 -9 6 1297 266 320 179 48 chr3 93352389 93352596 -66247187 - MIRb SINE MIR -2 266 33 6 1297 203 290 0 0 chr3 93352748 93352810 -66246973 + C-rich Low_complexity Low_complexity 6 67 0 6 1297 202 366 61 8 chr3 93352814 93352946 -66246837 + L2c LINE L2 3096 3234 -153 6 1297 1891 201 81 13 chr3 93353015 93353409 -66246374 - MTC LTR MaLR 0 421 1 6 1297 534 267 92 27 chr3 93353575 93353760 -66246023 + B3A SINE B2 2 198 0 6 1297 1325 88 11 6 chr3 93354430 93354613 -66245170 + B2_Mm1t SINE B2 2 185 -8 6 1297 5795 33 5 0 chr3 93354630 93355297 -66244486 + MERVL-int LTR ERVL 4678 5347 -138 6 1297 261 68 85 0 chr3 93355302 93355361 -66244422 + (TTATA)n Simple_repeat Simple_repeat 1 64 0 6 1297 474 18 0 0 chr3 93355460 93355515 -66244268 + (CAAAA)n Simple_repeat Simple_repeat 1 55 0 6 1297 273 269 95 34 chr3 93356061 93356220 -66243563 - MLT1J LTR MaLR -344 168 25 6 1297 430 209 105 0 chr3 93356681 93356786 -66242997 - PB1D9 SINE Alu 0 120 5 6 1297 333 225 0 101 chr3 93357069 93357158 -66242625 + ID4_ SINE ID 2 81 -2 6 1297 364 349 70 32 chr3 93357368 93357525 -66242258 + RSINE1 SINE B4 3 165 0 6 1297 651 26 0 0 chr3 93358861 93358938 -66240845 + (GA)n Simple_repeat Simple_repeat 1 77 0 6 1297 306 0 0 0 chr3 93360512 93360546 -66239237 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 6 1297 387 0 0 0 chr3 93360752 93360795 -66238988 + (GA)n Simple_repeat Simple_repeat 1 43 0 6 1297 268 225 100 11 chr3 93363740 93363830 -66235953 + PB1D10 SINE Alu 1 98 -19 6 1297 255 61 0 0 chr3 93366934 93366967 -66232816 + (TG)n Simple_repeat Simple_repeat 2 34 0 6 1297 620 321 6 0 chr3 93367048 93367207 -66232576 - RSINE1 SINE B4 0 165 6 6 1297 763 237 99 20 chr3 93367216 93367418 -66232365 - B4A SINE B4 -74 218 1 6 1297 24 32 0 0 chr3 93368132 93368163 -66231620 + AT_rich Low_complexity Low_complexity 1 31 0 6 1297 716 155 70 0 chr3 93368973 93369102 -66230681 + B1_Mus2 SINE Alu 9 146 -1 6 1297 405 0 0 0 chr3 93369240 93369285 -66230498 + (CA)n Simple_repeat Simple_repeat 2 46 0 6 1297 424 254 21 81 chr3 93369506 93369657 -66230126 - ID_B1 SINE B4 -8 216 80 6 1297 1439 56 22 0 chr3 93370191 93370369 -66229414 + B2_Mm2 SINE B2 2 183 -12 6 1297 371 85 390 11 chr3 93370419 93370514 -66229269 + B2_Mm2 SINE B2 47 177 -18 6 1297 1409 51 51 0 chr3 93371218 93371396 -66228387 + B2_Mm2 SINE B2 2 188 -7 6 1297 209 33 33 0 chr3 93371421 93371451 -66228332 + (TTTA)n Simple_repeat Simple_repeat 4 34 0 6 1297 1006 201 35 5 chr3 93371451 93371651 -66228132 - B3 SINE B2 -9 207 2 6 1297 457 263 26 84 chr3 93371967 93372067 -66227716 + RMER30 DNA MER1_type 1 93 -109 6 1297 306 0 0 0 chr3 93372067 93372101 -66227682 + (CA)n Simple_repeat Simple_repeat 1 34 0 6 1297 457 263 26 84 chr3 93372101 93372191 -66227592 + RMER30 DNA MER1_type 94 180 -22 6 1297 206 42 40 40 chr3 93372241 93372291 -66227492 + (TTTTTG)n Simple_repeat Simple_repeat 5 54 0 6 1297 483 18 0 0 chr3 93372494 93372550 -66227233 + (TG)n Simple_repeat Simple_repeat 2 57 0 6 1297 207 0 0 0 chr3 93373383 93373406 -66226377 + (T)n Simple_repeat Simple_repeat 1 23 0 6 1297 258 280 59 10 chr3 93373406 93373507 -66226276 + L1M5 LINE L1 5620 5725 -399 6 1297 422 257 25 42 chr3 93373914 93374032 -66225751 + PB1D7 SINE Alu 4 119 -1 6 1297 371 234 50 108 chr3 93374074 93374213 -66225570 + ID_B1 SINE B4 94 224 0 6 1297 1243 76 0 0 chr3 93374213 93374371 -66225412 - L1_Mm LINE L1 -357 5526 5369 6 1297 2502 58 0 0 chr3 93374371 93374679 -66225104 + L1_Mus1 LINE L1 6260 6567 0 6 1297 200 345 55 0 chr3 93374706 93374816 -66224967 - MIRb SINE MIR -15 253 138 6 1297 924 36 0 0 chr3 93375638 93375750 -66224033 + (GAA)n Simple_repeat Simple_repeat 3 114 0 6 1297 23 54 0 0 chr3 93377025 93377062 -66222721 + AT_rich Low_complexity Low_complexity 1 37 0 6 1297 365 168 26 34 chr3 93377090 93377207 -66222576 - Lx8 LINE L1 -5 7468 7353 6 1297 1185 42 7 0 chr3 93377223 93377365 -66222418 + B1_Mm SINE Alu 2 144 -3 6 1297 207 0 0 0 chr3 93377365 93377388 -66222395 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 6 1297 801 185 15 0 chr3 93377409 93377544 -66222239 + B1_Mur4 SINE Alu 6 142 -8 6 1297 255 31 0 0 chr3 93377544 93377576 -66222207 + (CAAAC)n Simple_repeat Simple_repeat 2 33 0 6 1297 248 0 31 0 chr3 93377585 93377617 -66222166 + (CAA)n Simple_repeat Simple_repeat 1 33 0 6 1297 1645 240 125 7 chr3 93377626 93378058 -66221725 - Lx8 LINE L1 -141 7332 6850 6 1297 558 126 42 2 chr3 93378058 93378166 -66221617 - B1_Mus1 SINE Alu -1 126 2 6 1297 357 259 22 11 chr3 93378086 93378176 -66221607 - B4 SINE B4 -125 167 77 6 1297 477 0 0 0 chr3 93378570 93378623 -66221160 + (CA)n Simple_repeat Simple_repeat 1 53 0 6 1297 473 191 9 0 chr3 93378627 93378732 -66221051 + GA-rich Low_complexity Low_complexity 2 107 0 6 1297 323 260 104 0 chr3 93379159 93379255 -66220528 + L1MB4 LINE L1 5803 5908 -272 6 1297 2202 158 7 47 chr3 93379312 93379717 -66220066 - Lx5 LINE L1 -3 7047 6659 6 1297 486 121 0 11 chr3 93379717 93379804 -66219979 + Lx5 LINE L1 5221 5307 -570 6 1297 3183 35 0 3 chr3 93379804 93380179 -66219604 - L1Md_F3 LINE L1 -8 6576 6203 6 1297 564 89 0 0 chr3 93380205 93380284 -66219499 + (TTTA)n Simple_repeat Simple_repeat 3 81 0 6 1297 1095 89 6 0 chr3 93380284 93380441 -66219342 - B2_Mm1t SINE B2 -35 158 1 6 1297 1166 88 0 0 chr3 93380475 93380622 -66219161 - B1_Mus2 SINE Alu 0 147 1 6 1297 3612 148 44 15 chr3 93380622 93381543 -66218240 + Lx5 LINE L1 5302 6253 -797 6 1297 646 284 4 92 chr3 93381573 93381833 -66217950 + B4A SINE B4 1 237 -55 6 1297 609 72 0 0 chr3 93381858 93381941 -66217842 + (CA)n Simple_repeat Simple_repeat 1 83 0 6 1297 4901 75 5 0 chr3 93382007 93382649 -66217134 - L1_Mus3 LINE L1 -4 6634 5990 6 1297 328 256 130 53 chr3 93382649 93382813 -66216970 - MIR SINE MIR -66 196 19 6 1297 387 270 109 16 chr3 93382928 93383120 -66216663 + MIR SINE MIR 18 227 -35 6 1297 463 308 44 0 chr3 93383312 93383471 -66216312 + MIRb SINE MIR 22 187 -81 6 1297 203 298 75 0 chr3 93383753 93383847 -66215936 + MIR SINE MIR 81 181 -81 6 1297 1218 132 5 16 chr3 93384336 93384529 -66215254 - B2_Mm1t SINE B2 -1 192 2 6 1297 426 281 25 0 chr3 93385333 93385454 -66214329 + PB1 SINE Alu 1 124 -3 6 1297 1240 97 5 0 chr3 93387835 93388020 -66211763 + B2_Mm1a SINE B2 1 186 -7 6 1297 1508 164 100 9 chr3 93388615 93388935 -66210848 + ORR1D1 LTR MaLR 1 349 -25 6 1297 225 261 0 64 chr3 93389565 93389659 -66210124 - L1MC5 LINE L1 -221 7740 7653 6 1297 308 292 133 50 chr3 93389743 93389873 -66209910 - LTR41 LTR ERVL 0 768 627 6 1297 562 270 0 0 chr3 93389873 93389988 -66209795 + PB1D7 SINE Alu 1 115 -5 6 1297 308 292 133 50 chr3 93389988 93390037 -66209746 - LTR41 LTR ERVL -142 626 574 6 1297 475 308 145 39 chr3 93390072 93390410 -66209373 - MER21B LTR ERV1 -22 841 468 6 1297 494 233 45 0 chr3 93390614 93390752 -66209031 - B1F SINE Alu -6 143 1 6 1297 1582 32 384 0 chr3 93391365 93391615 -66208168 + ORR1A0 LTR MaLR 1 346 0 6 1297 232 102 20 20 chr3 93391699 93391749 -66208034 + (TTCC)n Simple_repeat Simple_repeat 4 53 0 6 1297 396 0 0 0 chr3 93391749 93391793 -66207990 + (TC)n Simple_repeat Simple_repeat 1 44 0 6 1297 311 283 159 40 chr3 93391806 93391957 -66207826 - B4A SINE B4 -71 221 53 6 1297 261 279 9 35 chr3 93391989 93392041 -66207742 + polypyrimidine Low_complexity Low_complexity 61 113 0 6 1297 396 240 214 17 chr3 93392041 93392081 -66207702 - B3 SINE B2 -1 215 167 6 1297 204 40 0 0 chr3 93392081 93392106 -66207677 + (TG)n Simple_repeat Simple_repeat 1 25 0 6 1297 396 240 214 17 chr3 93392106 93392243 -66207540 - B3 SINE B2 -50 166 3 6 1297 261 279 9 35 chr3 93392243 93392305 -66207478 + polypyrimidine Low_complexity Low_complexity 3 60 0 6 1297 2030 148 66 5 chr3 93392321 93392702 -66207081 + RMER6B LTR ERVK 58 461 0 6 1297 601 122 16 8 chr3 93392708 93392832 -66206951 + (TTCC)n Simple_repeat Simple_repeat 4 128 0 6 1297 216 298 131 8 chr3 93393262 93393384 -66206399 - MIRb SINE MIR -110 158 22 6 1297 269 304 0 0 chr3 93393983 93394052 -66205731 + ID4 SINE ID 2 70 -13 6 1297 1626 219 43 13 chr3 93394098 93394491 -66205292 - MTD LTR MaLR -14 405 1 6 1297 23 0 0 0 chr3 93394540 93394563 -66205220 + AT_rich Low_complexity Low_complexity 1 23 0 6 1297 597 289 26 41 chr3 93394980 93395175 -66204608 - B3A SINE B2 -6 192 1 6 1297 336 200 0 0 chr3 93395212 93395297 -66204486 + CT-rich Low_complexity Low_complexity 1 85 0 6 1297 341 299 116 24 chr3 93395508 93395758 -66204025 + MLT1E2 LTR MaLR 17 289 -338 6 1297 976 117 0 12 chr3 93395783 93395948 -66203835 + (GAAA)n Simple_repeat Simple_repeat 2 164 0 7 1297 218 234 116 41 chr3 93396267 93396396 -66203387 - MIRm SINE MIR -32 176 33 7 1297 346 264 46 0 chr3 93398057 93398144 -66201639 + B4A SINE B4 2 92 -200 7 1297 344 293 73 35 chr3 93398174 93398323 -66201460 + B4A SINE B4 8 153 -71 7 1297 648 250 0 0 chr3 93398457 93398589 -66201194 + B1_Mur4 SINE Alu 11 142 -8 7 1297 588 134 16 16 chr3 93398594 93398715 -66201068 + GA-rich Low_complexity Low_complexity 3 123 0 7 1297 318 238 0 57 chr3 93399087 93399188 -66200595 - B1F1 SINE Alu -31 118 33 7 1297 435 299 0 59 chr3 93399700 93399805 -66199978 + B1F2 SINE Alu 19 120 -29 7 1297 2961 114 31 5 chr3 93399805 93400254 -66199529 - RMER6B LTR ERVK 0 461 1 7 1297 435 299 0 59 chr3 93400254 93400283 -66199500 + B1F2 SINE Alu 121 145 -4 7 1297 243 0 0 0 chr3 93401800 93401827 -66197956 + (TTTTTG)n Simple_repeat Simple_repeat 2 28 0 7 1297 683 192 37 192 chr3 93402173 93402547 -66197236 - RMER17C LTR ERVK -94 316 1 7 1297 367 276 47 70 chr3 93402877 93403001 -66196782 - L1MB7 LINE L1 -23 6161 6035 7 1297 3869 60 83 39 chr3 93403001 93403541 -66196242 - LTRIS2 LTR ERV1 0 564 1 7 1297 367 276 47 70 chr3 93403541 93403630 -66196153 - L1MB7 LINE L1 -150 6034 5953 7 1297 673 262 90 23 chr3 93403609 93403924 -66195859 - L1MA7 LINE L1 -230 6067 5738 7 1297 276 280 136 27 chr3 93404060 93404207 -66195576 + MIR SINE MIR 18 180 -82 7 1297 333 234 15 0 chr3 93404503 93404583 -66195200 - ID4_ SINE ID -58 94 14 7 1297 189 0 0 0 chr3 93404634 93404655 -66195128 + (TG)n Simple_repeat Simple_repeat 2 22 0 7 1297 341 254 103 26 chr3 93404677 93404794 -66194989 - RSINE1 SINE B4 -31 134 9 7 1297 348 24 0 0 chr3 93406258 93406299 -66193484 + (CA)n Simple_repeat Simple_repeat 2 42 0 7 1297 4364 141 20 9 chr3 93406626 93407314 -66192469 - RMER1B Other Other -6 1060 365 7 1297 405 355 118 12 chr3 93407543 93407797 -66191986 + MER20B DNA MER1_type 1 281 -502 7 1297 255 304 52 56 chr3 93408134 93408347 -66191436 + MER20B DNA MER1_type 537 748 -35 7 1297 314 314 176 8 chr3 93408406 93408531 -66191252 + RSINE1 SINE B4 6 151 -14 7 1297 1744 164 99 43 chr3 93408531 93408945 -66190838 - RMER10A LTR ERVL 0 442 6 7 1297 29 0 0 0 chr3 93408986 93409015 -66190768 + AT_rich Low_complexity Low_complexity 1 29 0 7 1297 245 264 35 20 chr3 93409737 93409847 -66189936 + MLT1D LTR MaLR 5 113 -514 7 1297 258 253 35 46 chr3 93409920 93410007 -66189776 + MLT1D LTR MaLR 249 334 -171 7 1297 400 271 119 0 chr3 93410014 93410132 -66189651 + B1F1 SINE Alu 10 141 -8 7 1297 621 100 0 0 chr3 93410156 93410246 -66189537 + (GGAGA)n Simple_repeat Simple_repeat 5 94 0 7 1297 248 259 72 24 chr3 93410346 93410429 -66189354 - MTE2a LTR MaLR -14 365 279 7 1297 423 0 0 0 chr3 93410957 93411004 -66188779 + (TAAA)n Simple_repeat Simple_repeat 4 50 0 7 1297 608 253 113 5 chr3 93411171 93411366 -66188417 - B3 SINE B2 0 216 1 7 1297 242 221 62 38 chr3 93411620 93411700 -66188083 - B1F SINE Alu -1 148 67 7 1297 317 278 103 0 chr3 93411629 93411726 -66188057 - ID_B1 SINE B4 -9 215 109 7 1297 245 384 7 7 chr3 93412263 93412415 -66187368 - L1M3a LINE L1 -5724 231 80 7 1297 246 193 0 0 chr3 93412493 93412550 -66187233 + (TA)n Simple_repeat Simple_repeat 1 57 0 7 1297 30 0 0 0 chr3 93412652 93412682 -66187101 + AT_rich Low_complexity Low_complexity 1 30 0 7 1297 2706 94 0 104 chr3 93413178 93413640 -66186143 + L1_Mus4 LINE L1 6222 6635 -1 7 1297 236 30 30 0 chr3 93413646 93413679 -66186104 + (GAAA)n Simple_repeat Simple_repeat 3 36 0 7 1297 186 128 0 0 chr3 93414110 93414149 -66185634 + (CAAAAA)n Simple_repeat Simple_repeat 2 40 0 7 1297 239 290 112 59 chr3 93414724 93414911 -66184872 + L1MC2 LINE L1 6123 6319 -25 7 1297 2130 253 138 11 chr3 93415150 93415881 -66183902 + Lx7 LINE L1 6877 7695 -1 7 1297 808 261 14 29 chr3 93416608 93416746 -66183037 + B3 SINE B2 5 142 -74 7 1297 2456 187 91 23 chr3 93416746 93417276 -66182507 + RMER2 LTR ERV1 2 567 0 7 1297 808 261 14 29 chr3 93417276 93417346 -66182437 + B3 SINE B2 143 210 -6 7 1297 3225 55 2 15 chr3 93417439 93417844 -66181939 + MTB LTR MaLR 1 400 0 7 1297 41748 9 2 0 chr3 93418118 93424431 -66175352 - L1Md_A LINE L1 0 6582 260 7 1297 1942 254 70 10 chr3 93424434 93424935 -66174848 - Lx6 LINE L1 -78 7382 6852 7 1297 248 183 0 16 chr3 93424943 93425004 -66174779 + CT-rich Low_complexity Low_complexity 1 60 0 7 1297 836 241 9 65 chr3 93425005 93425236 -66174547 - Lx6 LINE L1 -567 6893 6676 7 1297 1112 205 76 0 chr3 93425236 93425485 -66174298 - ORR1C1 LTR MaLR -1 377 110 7 1297 437 250 23 167 chr3 93425574 93425790 -66173993 - ORR1B1 LTR MaLR -161 233 49 7 1297 307 299 112 4 chr3 93425791 93425959 -66173824 - RMER1C Other Other -809 533 386 7 1297 233 379 11 0 chr3 93425986 93426081 -66173702 - RMER1C Other Other -1213 129 34 7 1297 253 339 70 0 chr3 93426129 93426244 -66173539 - RMER1B Other Other -895 171 49 7 1297 324 70 0 0 chr3 93426257 93426300 -66173483 + (TG)n Simple_repeat Simple_repeat 1 43 0 7 1297 585 42 0 0 chr3 93426300 93426372 -66173411 + (TCTA)n Simple_repeat Simple_repeat 3 74 0 7 1297 808 227 31 94 chr3 93426372 93426596 -66173187 - RMER1C Other Other -1101 241 32 7 1297 621 237 0 0 chr3 93426785 93426903 -66172880 - RMER1B Other Other -355 711 594 7 1297 4288 182 14 143 chr3 93426950 93427516 -66172267 - L1_Mur3 LINE L1 -90 5790 5252 7 1297 1266 173 184 68 chr3 93427516 93427869 -66171914 + RMER10B LTR ERVL 5 398 0 7 1297 4288 182 14 143 chr3 93427869 93428522 -66171261 - L1_Mur3 LINE L1 -629 5251 4728 7 1297 2110 145 79 22 chr3 93429326 93429765 -66170018 - BGLII_B LTR ERVK -6 435 3 7 1297 1193 168 32 0 chr3 93429854 93430074 -66169709 - ORR1A2 LTR MaLR -8 319 93 7 1297 223 85 21 21 chr3 93430075 93430123 -66169660 + (TTTTG)n Simple_repeat Simple_repeat 3 50 0 7 1297 1856 103 138 37 chr3 93430125 93430530 -66169253 - RLTR47_MM LTR ERV1 -85 447 2 7 1297 663 145 21 2 chr3 93430530 93430650 -66169133 - ORR1A2 LTR MaLR -241 153 1 7 1297 227 366 30 0 chr3 93430650 93430739 -66169044 - B3 SINE B2 -83 133 42 7 1297 1621 178 45 42 chr3 93430784 93431071 -66168712 - ORR1B1 LTR MaLR 0 394 98 7 1297 4201 118 8 119 chr3 93431071 93431916 -66167867 - RMER17A LTR ERVK 0 751 1 7 1297 1621 178 45 42 chr3 93431916 93431981 -66167802 - ORR1B1 LTR MaLR -297 97 41 7 1297 260 0 0 54 chr3 93431994 93432031 -66167752 + (TTTTA)n Simple_repeat Simple_repeat 1 35 0 7 1297 462 117 68 0 chr3 93432032 93432135 -66167648 - Lx3A LINE L1 -16 6965 6856 7 1297 812 203 29 29 chr3 93433863 93434071 -66165712 + RMER17C LTR ERVK 203 410 0 7 1297 601 219 44 104 chr3 93434071 93434254 -66165529 + RMER17C-int LTR ERVK 1 172 -3066 7 1297 407 200 37 12 chr3 93434420 93434501 -66165282 + RMER17C-int LTR ERVK 1618 1700 -1538 7 1297 292 209 15 15 chr3 93434907 93434975 -66164808 + RMER17C-int LTR ERVK 1163 1230 -2008 7 1297 4868 160 130 60 chr3 93434990 93436357 -66163426 + RMER17C-int LTR ERVK 1119 2502 -736 7 1297 324 0 0 0 chr3 93436357 93436393 -66163390 + (TG)n Simple_repeat Simple_repeat 2 37 0 7 1297 4661 151 37 48 chr3 93436393 93436747 -66163036 + RMER17C-int LTR ERVK 2501 2868 -370 7 1297 378 61 0 0 chr3 93436747 93436796 -66162987 + (TA)n Simple_repeat Simple_repeat 2 50 0 7 1297 4661 151 37 48 chr3 93436796 93437191 -66162592 + RMER17C-int LTR ERVK 2869 3238 0 7 1297 790 160 0 198 chr3 93437198 93437532 -66162251 + RMER17C LTR ERVK 8 275 -135 7 1297 27 0 0 0 chr3 93437546 93437573 -66162210 + AT_rich Low_complexity Low_complexity 1 27 0 7 1297 752 253 210 65 chr3 93437667 93438191 -66161592 - MT2B LTR ERVL 0 601 2 7 1297 774 0 0 0 chr3 93438520 93438606 -66161177 + (TTTC)n Simple_repeat Simple_repeat 1 86 0 7 1297 1087 67 0 0 chr3 93438606 93438741 -66161042 - B1_Mus1 SINE Alu -12 136 2 7 1297 206 32 32 0 chr3 93439503 93439534 -66160249 + (TTG)n Simple_repeat Simple_repeat 2 33 0 7 1297 212 0 36 0 chr3 93439528 93439556 -66160227 + (TTTG)n Simple_repeat Simple_repeat 4 32 0 7 1297 1140 62 7 0 chr3 93439556 93439701 -66160082 - B1_Mm SINE Alu 0 147 2 7 1297 341 248 99 13 chr3 93439732 93439883 -66159900 - RLTR14-int LTR ERV1 -4740 577 414 7 1297 214 182 0 29 chr3 93439895 93439963 -66159820 + GA-rich Low_complexity Low_complexity 2 67 0 7 1297 923 239 22 51 chr3 93440058 93440129 -66159654 - RLTR14-int LTR ERV1 -5052 265 201 7 1297 2938 171 91 32 chr3 93440129 93440638 -66159145 - RMER6A LTR ERVK 0 756 223 7 1297 1057 82 7 0 chr3 93440638 93440784 -66158999 + B1_Mus1 SINE Alu 1 147 -1 7 1297 2938 171 91 32 chr3 93440784 93440988 -66158795 - RMER6A LTR ERVK -534 222 1 7 1297 923 239 22 51 chr3 93440988 93441189 -66158594 - RLTR14-int LTR ERV1 -5117 200 1 7 1297 183 42 0 0 chr3 93441225 93441249 -66158534 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 7 1297 1061 111 12 0 chr3 93441249 93441411 -66158372 - B2_Mm1t SINE B2 -29 164 1 7 1297 841 278 51 47 chr3 93441431 93441707 -66158076 - Lx6 LINE L1 -4 7456 7180 7 1297 306 203 0 0 chr3 93441872 93441936 -66157847 - RLTR31_Mur LTR ERVK -169 384 321 7 1297 1073 103 0 0 chr3 93441966 93442111 -66157672 - B1_Mus1 SINE Alu -2 146 2 7 1297 888 243 36 47 chr3 93442114 93442512 -66157271 - RLTR31_Mur LTR ERVK -7 434 1 7 1297 228 86 0 0 chr3 93442641 93442676 -66157107 + (TCTA)n Simple_repeat Simple_repeat 4 38 0 7 1297 3865 232 51 40 chr3 93442681 93444402 -66155381 - Lx5 LINE L1 -296 6754 5019 7 1297 464 320 49 24 chr3 93444700 93444905 -66154878 + B3 SINE B2 1 210 -6 7 1297 661 225 60 11 chr3 93445190 93445374 -66154409 - Lx6 LINE L1 -1 7459 7267 7 1297 469 319 14 14 chr3 93445365 93445508 -66154275 - RMER1C Other Other -1172 170 28 7 1297 314 273 0 0 chr3 93445684 93445750 -66154033 - RMER1B Other Other -353 713 648 7 1297 264 280 0 0 chr3 93445752 93445827 -66153956 - RMER1B Other Other -392 674 600 7 1297 263 287 89 44 chr3 93446186 93446321 -66153462 + RLTR41 LTR ERV1 306 446 0 7 1297 2193 220 4 24 chr3 93446352 93446541 -66153242 - L1_Mur3 LINE L1 -90 5790 5607 7 1297 3597 63 33 2 chr3 93446541 93447001 -66152782 + MT2C_Mm LTR ERVL 1 474 -1 7 1297 2193 220 4 24 chr3 93447001 93447310 -66152473 - L1_Mur3 LINE L1 -274 5606 5302 7 1297 1108 177 100 8 chr3 93447372 93447611 -66152172 - MTC LTR MaLR -158 263 3 7 1297 201 140 60 0 chr3 93447713 93447763 -66152020 + (TTTG)n Simple_repeat Simple_repeat 2 54 0 7 1297 393 306 46 0 chr3 93448295 93448403 -66151380 - B1_Mur4 SINE Alu -13 137 25 7 1297 211 323 15 0 chr3 93448983 93449048 -66150735 - ID4 SINE ID -12 71 6 7 1297 266 321 0 24 chr3 93449504 93449587 -66150196 + RLTR14-int LTR ERV1 245 325 -4992 8 1297 373 252 29 0 chr3 93449590 93449693 -66150090 + RLTR14 LTR ERV1 31 136 -246 8 1297 5406 92 14 52 chr3 93449722 93450555 -66149228 + RLTR13B4 LTR ERVK 2 803 0 8 1297 10640 123 40 46 chr3 93450570 93452218 -66147565 - L1_Mus2 LINE L1 0 6566 4931 8 1297 2463 95 11 27 chr3 93452218 93452252 -66147531 + L1Md_F2 LINE L1 6219 6251 -331 8 1297 3248 97 40 17 chr3 93452252 93452723 -66147060 + RLTR45 LTR ERVK 1 482 0 8 1297 2463 95 11 27 chr3 93452723 93453055 -66146728 + L1Md_F2 LINE L1 6252 6579 -3 8 1297 10640 122 13 34 chr3 93453055 93453788 -66145995 - L1_Mus2 LINE L1 -953 4930 4205 8 1297 6258 90 22 42 chr3 93453788 93454328 -66145455 + L1_Mus2 LINE L1 5646 6176 -390 8 162 1179 56 7 0 chr3 93454328 93454472 -66145311 - B1_Mm SINE Alu 0 147 3 8 1298 6258 90 22 42 chr3 93454472 93454870 -66144913 + L1_Mus2 LINE L1 6177 6566 0 8 1298 693 308 50 86 chr3 93454881 93454993 -66144790 - L1_Mur3 LINE L1 -6956 756 635 8 1298 1116 82 0 7 chr3 93454993 93455141 -66144642 + B1_Mus1 SINE Alu 2 148 0 8 1298 693 308 50 86 chr3 93455141 93455469 -66144314 - L1_Mur3 LINE L1 -7078 634 332 8 1298 647 183 91 59 chr3 93456719 93456940 -66142843 + RMER17C LTR ERVK 181 408 -2 8 1298 1643 253 43 78 chr3 93456940 93457595 -66142188 + RMER17C-int LTR ERVK 1 632 -2606 8 1298 385 217 72 0 chr3 93457675 93457758 -66142025 + RMER17C-int LTR ERVK 1618 1706 -1532 8 1298 379 208 110 92 chr3 93458148 93458312 -66141471 + RMER17C-int LTR ERVK 1064 1230 -2008 8 1298 900 169 176 43 chr3 93458327 93458537 -66141246 + RMER17C-int LTR ERVK 1119 1356 -1882 8 1298 1487 197 23 50 chr3 93458577 93458919 -66140864 + RMER17C-int LTR ERVK 1475 1807 -1431 8 1298 8337 71 18 5 chr3 93458928 93460815 -66138968 + L1_Mus1 LINE L1 4677 6567 0 8 1298 3294 163 44 33 chr3 93460815 93461476 -66138307 + RMER17C-int LTR ERVK 1807 2474 -764 8 1298 282 159 0 92 chr3 93461540 93461616 -66138167 + RMER17C-int LTR ERVK 2392 2460 -778 8 1298 1116 104 59 27 chr3 93461624 93461811 -66137972 - B2_Mm1t SINE B2 0 193 1 8 1298 1062 107 16 33 chr3 93461814 93461997 -66137786 + RMER17C-int LTR ERVK 2452 2631 -607 8 1298 846 267 12 102 chr3 93462138 93462311 -66137472 + RMER17C LTR ERVK 17 180 -230 8 1298 882 54 0 0 chr3 93462311 93462423 -66137360 + (TC)n Simple_repeat Simple_repeat 2 113 0 8 1298 846 267 12 102 chr3 93462423 93462533 -66137250 + RMER17C LTR ERVK 181 269 -141 8 1298 1071 104 14 0 chr3 93462533 93462677 -66137106 - B1_Mus1 SINE Alu -1 147 2 8 1298 846 267 12 102 chr3 93462677 93462792 -66136991 + RMER17C LTR ERVK 270 380 -30 8 1298 746 199 152 78 chr3 93462880 93463232 -66136551 - MT2B LTR ERVL 0 601 176 8 1298 1046 72 65 0 chr3 93463232 93463370 -66136413 + B1_Mus2 SINE Alu 1 147 0 8 1298 203 0 37 0 chr3 93463892 93463919 -66135864 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 8 1298 990 78 43 0 chr3 93463919 93464051 -66135732 - B1_Mus1 SINE Alu -9 139 2 8 1298 249 33 0 0 chr3 93464841 93464871 -66134912 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 8 1298 1360 258 67 106 chr3 93464900 93465286 -66134497 - RLTR14-int LTR ERV1 -4754 563 201 8 1298 2950 177 83 50 chr3 93465286 93465816 -66133967 - RMER6A LTR ERVK 0 756 194 8 1298 827 90 8 0 chr3 93465816 93465938 -66133845 + (TTTC)n Simple_repeat Simple_repeat 2 124 0 8 1298 1065 59 0 7 chr3 93465939 93466076 -66133707 - B1_Mus1 SINE Alu -12 136 1 8 1298 2950 177 83 50 chr3 93466076 93466275 -66133508 - RMER6A LTR ERVK -563 193 1 8 1298 1360 258 67 106 chr3 93466275 93466474 -66133309 - RLTR14-int LTR ERV1 -5117 200 3 8 1298 1071 62 13 27 chr3 93466559 93466708 -66133075 + B1_Mm SINE Alu 1 147 0 8 1298 594 257 98 38 chr3 93466712 93466947 -66132836 - Lx6 LINE L1 -30 7430 7182 8 1298 1382 259 100 29 chr3 93466951 93467548 -66132235 - RLTR31_Mur LTR ERVK 0 553 11 8 1298 2287 267 80 141 chr3 93467551 93467941 -66131842 - Lx5 LINE L1 -261 6789 6446 8 1298 1110 83 0 14 chr3 93467941 93468088 -66131695 + B1_Mus2 SINE Alu 2 146 -1 8 1298 2287 267 80 141 chr3 93468088 93468758 -66131025 - Lx5 LINE L1 -605 6445 5788 8 1298 1114 78 0 0 chr3 93468758 93468900 -66130883 - B1_Mus2 SINE Alu -5 142 1 8 1298 3366 215 18 19 chr3 93468900 93469684 -66130099 - Lx5 LINE L1 -1263 5787 5019 8 1298 521 319 19 29 chr3 93469979 93470189 -66129594 + B3 SINE B2 3 210 -6 8 1298 528 206 64 0 chr3 93470473 93470614 -66129169 - Lx6 LINE L1 -2 7458 7309 8 1298 2591 85 46 27 chr3 93470641 93471053 -66128730 + RMER16 LTR ERVK 74 493 -40 8 1298 565 250 24 35 chr3 93471059 93471142 -66128641 - ORR1B1 LTR MaLR -16 378 295 8 1298 3234 58 2 2 chr3 93471142 93471538 -66128245 + MTA_Mm LTR MaLR 1 396 0 8 1298 565 250 24 35 chr3 93471538 93471624 -66128159 - ORR1B1 LTR MaLR -100 294 211 8 1298 406 229 252 4 chr3 93471630 93471703 -66128080 - ORR1B1-int LTR MaLR -1001 962 793 8 1298 481 275 42 0 chr3 93471703 93471823 -66127960 - B1_Mus2 SINE Alu -20 127 3 8 1298 406 229 252 4 chr3 93471823 93471884 -66127899 - ORR1B1-int LTR MaLR -1001 792 646 8 1298 297 190 35 0 chr3 93471857 93471915 -66127868 - MT2B2 LTR ERVL -523 61 2 8 1298 716 324 76 100 chr3 93471933 93472087 -66127696 - Lx5 LINE L1 -6877 851 675 8 1298 694 163 0 8 chr3 93472087 93472217 -66127566 + Lx LINE L1 6525 6653 -1 8 1298 833 319 70 52 chr3 93472217 93473122 -66126661 - Lx5 LINE L1 -7054 674 50 8 1298 936 213 5 5 chr3 93473133 93473350 -66126433 + URR1A DNA MER1_type 9 225 -1 8 1298 489 251 60 92 chr3 93473679 93473863 -66125920 - B3 SINE B2 -1 194 17 8 1298 706 210 92 46 chr3 93475521 93475781 -66124002 + RMER17C LTR ERVK 139 410 0 8 1298 1478 246 74 109 chr3 93475781 93476485 -66123298 + RMER17C-int LTR ERVK 1 679 -2559 8 1298 327 161 46 46 chr3 93476493 93476558 -66123225 + RMER17C-int LTR ERVK 1618 1682 -1556 8 1298 398 192 25 0 chr3 93477077 93477164 -66122619 + RMER17C-int LTR ERVK 1100 1230 -2008 8 1298 620 227 86 60 chr3 93477179 93477446 -66122337 + RMER17C-int LTR ERVK 1119 1392 -1846 8 1298 3874 175 60 40 chr3 93477485 93478350 -66121433 + RMER17C-int LTR ERVK 1579 2460 -778 8 1298 1165 62 0 0 chr3 93478360 93478504 -66121279 - B1_Mus1 SINE Alu 0 148 5 8 1298 748 161 0 53 chr3 93478504 93478674 -66121109 + RMER17C-int LTR ERVK 2358 2518 -720 8 1298 296 212 29 29 chr3 93478674 93478742 -66121041 - LSU-rRNA_Hsa rRNA rRNA -769 4266 4199 8 1298 1704 125 13 33 chr3 93478742 93479041 -66120742 + RMER17C-int LTR ERVK 2589 2881 -357 8 1298 213 132 0 0 chr3 93479047 93479085 -66120698 + (TCC)n Simple_repeat Simple_repeat 3 40 0 8 1298 1941 141 23 29 chr3 93479113 93479457 -66120326 + RMER17C-int LTR ERVK 2897 3238 0 8 1298 970 211 36 166 chr3 93479457 93479928 -66119855 + RMER17C LTR ERVK 1 410 0 8 1298 709 190 119 114 chr3 93479988 93480367 -66119416 - MT2B LTR ERVL 0 601 181 8 1298 265 337 42 88 chr3 93480706 93480898 -66118885 - MTEa LTR MaLR -162 217 35 8 1298 329 217 0 14 chr3 93481423 93481493 -66118290 - RLTR14-int LTR ERV1 -5052 265 197 8 1298 1484 212 62 41 chr3 93481495 93481933 -66117850 - RMER6A LTR ERVK 0 756 310 8 1298 557 272 179 5 chr3 93481934 93482141 -66117642 - Lx2B LINE L1 -3 6997 6755 8 1298 329 301 10 10 chr3 93482144 93482248 -66117535 - RMER1B Other Other -369 697 594 8 1298 552 77 0 0 chr3 93482265 93482343 -66117440 + (TTA)n Simple_repeat Simple_repeat 2 79 0 8 1298 2486 189 55 8 chr3 93482343 93482855 -66116928 - L1_Mur3 LINE L1 -98 5782 5247 8 1298 5167 197 19 8 chr3 93483018 93484146 -66115637 + L1_Mur3 LINE L1 3992 5132 -748 8 1298 711 304 11 126 chr3 93484146 93484504 -66115279 + Lx5 LINE L1 6455 6902 -558 8 1298 369 0 0 0 chr3 93484504 93484545 -66115238 + (TG)n Simple_repeat Simple_repeat 2 42 0 8 1298 711 303 5 140 chr3 93484545 93484643 -66115140 + Lx5 LINE L1 6737 6812 -238 8 1298 1434 230 59 83 chr3 93484661 93485235 -66114548 + RLTR31_Mur LTR ERVK 41 553 0 8 1298 705 309 52 20 chr3 93485237 93485488 -66114295 + Lx6 LINE L1 7180 7438 -22 8 1298 1023 254 128 46 chr3 93485552 93485754 -66114029 + RLTR14-int LTR ERV1 1 200 -5117 8 1298 3329 190 53 23 chr3 93485754 93486488 -66113295 + RMER6A LTR ERVK 1 756 0 8 1298 1023 254 128 46 chr3 93486488 93486653 -66113130 + RLTR14-int LTR ERV1 201 398 -4919 8 1298 1306 189 56 10 chr3 93486653 93486941 -66112842 + ORR1B1 LTR MaLR 90 390 -4 8 1298 788 237 82 22 chr3 93487032 93487451 -66112332 + BGLII_B LTR ERVK 3 437 -4 8 1298 4429 154 99 40 chr3 93487646 93488178 -66111605 + RMER16-int LTR ERVK 119 716 -4690 8 1298 201 39 0 0 chr3 93488178 93488204 -66111579 + (CA)n Simple_repeat Simple_repeat 1 26 0 8 1298 4429 154 99 40 chr3 93488204 93488614 -66111169 + RMER16-int LTR ERVK 717 1116 -4290 8 1298 797 37 28 0 chr3 93488614 93488723 -66111060 + B1_Mm SINE Alu 36 147 0 8 1298 189 139 0 0 chr3 93488725 93488768 -66111015 + (CAAAAA)n Simple_repeat Simple_repeat 5 47 0 8 1298 1832 219 32 41 chr3 93488770 93489208 -66110575 + RMER16-int LTR ERVK 1111 1544 -3862 8 1298 891 106 8 0 chr3 93489212 93489344 -66110439 + B1_Mus1 SINE Alu 7 139 -9 8 1298 1348 92 22 0 chr3 93489367 93489551 -66110232 + B2_Mm2 SINE B2 1 188 -7 8 1298 1484 211 28 25 chr3 93489554 93489874 -66109909 + RMER16-int LTR ERVK 1542 1862 -3544 8 1298 1263 41 0 0 chr3 93489874 93490021 -66109762 + B1_Mm SINE Alu 1 147 0 8 1298 229 23 0 104 chr3 93490021 93490069 -66109714 + (CAAAAA)n Simple_repeat Simple_repeat 6 48 0 8 1298 3385 121 6 6 chr3 93490072 93490580 -66109203 + RMER16-int LTR ERVK 1848 2355 -3051 8 1298 1361 245 6 108 chr3 93490583 93491072 -66108711 - L1_Mur3 LINE L1 -6426 1286 848 8 1298 885 198 16 5 chr3 93491073 93491261 -66108522 - ORR1A4 LTR MaLR -2 327 138 8 1298 488 232 199 0 chr3 93491274 93491339 -66108444 - ORR1A4-int LTR MaLR -1023 940 796 8 1298 501 233 78 0 chr3 93491339 93491455 -66108328 - B1_Mur3 SINE Alu -22 127 3 8 1298 375 229 350 48 chr3 93491455 93491553 -66108230 - MT2B LTR ERVL -440 161 2 8 1298 488 232 199 0 chr3 93491455 93491520 -66108263 - ORR1A4-int LTR MaLR -1023 795 646 8 1298 1001 275 100 13 chr3 93491553 93491932 -66107851 - L1_Mur3 LINE L1 -6861 851 440 8 1298 252 0 0 0 chr3 93493720 93493748 -66106035 + (CCCCCA)n Simple_repeat Simple_repeat 2 29 0 8 1298 552 202 58 0 chr3 93493966 93494070 -66105713 - B1_Mus2 SINE Alu -36 111 2 8 1298 928 216 42 18 chr3 93494528 93494745 -66105038 + URR1A DNA MER1_type 5 226 0 8 1298 1116 140 32 0 chr3 93494836 93495022 -66104761 + B2_Mm1a SINE B2 2 193 0 8 1298 409 277 18 0 chr3 93495337 93495449 -66104334 - B3A SINE B2 -55 143 30 8 1298 545 58 0 0 chr3 93497278 93497347 -66102436 - MusHAL1 LINE L1 -2989 365 297 8 1298 4429 166 33 11 chr3 93497340 93498228 -66101555 + L1_Mur2 LINE L1 3410 4316 -1561 8 1298 3465 61 19 82 chr3 93498268 93498782 -66101001 - RLTR45 LTR ERVK 0 482 1 8 1298 10045 46 10 3 chr3 93498782 93500000 -66099783 - RLTR45-int LTR ERVK 0 7244 5980 8 1298 7446 37 26 9 chr3 93500000 93500900 -66098883 - RLTR45-int LTR ERVK -1265 5979 5065 1 1298 4169 75 33 30 chr3 93500893 93501498 -66098285 - RLTR45-int LTR ERVK -3258 3986 3380 1 1298 11992 42 18 7 chr3 93501468 93503280 -66096503 - RLTR45-int LTR ERVK -4032 3212 1318 1 1298 260 218 54 54 chr3 93503570 93503662 -66096121 - MMTV-int LTR ERVK -4749 2504 2413 2 1298 1173 43 0 0 chr3 93504061 93504199 -66095584 - RLTR45-int LTR ERVK -6426 818 681 1 1298 4213 72 102 62 chr3 93504499 93505164 -66094619 - RLTR45-int LTR ERVK -6552 692 1 1 1298 3685 59 19 82 chr3 93505164 93505678 -66094105 - RLTR45 LTR ERVK 0 482 1 1 1298 381 230 95 26 chr3 93505682 93505798 -66093985 + Lx LINE L1 6255 6378 -276 3 1298 722 214 67 101 chr3 93505799 93506104 -66093679 - MT2B LTR ERVL -77 524 183 4 1298 3942 106 4 4 chr3 93506166 93506704 -66093079 - L1_Mus2 LINE L1 -6 6560 6023 5 1298 7701 75 11 11 chr3 93506720 93507869 -66091914 - L1_Mus1 LINE L1 0 6567 5451 6 1298 1152 92 0 0 chr3 93507869 93508011 -66091772 - B1_Mus2 SINE Alu -5 142 1 7 1298 4913 108 1 71 chr3 93508011 93508333 -66091450 - L1_Mus1 LINE L1 -433 5450 5140 6 1298 3419 89 2 2 chr3 93508328 93508839 -66090944 - L1_Mus2 LINE L1 -524 6042 5536 5 1298 1409 254 19 3 chr3 93508818 93509303 -66090480 - L1_Mur3 LINE L1 -5787 1283 845 8 1298 938 162 40 0 chr3 93509308 93509481 -66090302 - ORR1B1 LTR MaLR -8 386 207 9 1298 361 255 0 11 chr3 93509500 93509560 -66090223 - ORR1B1-int LTR MaLR -1023 940 881 9 1298 588 228 73 0 chr3 93509560 93509683 -66090100 - B1_Mur3 SINE Alu -15 134 3 1 1298 361 255 0 11 chr3 93509683 93509717 -66090066 - ORR1B1-int LTR MaLR -1083 880 847 9 1298 377 183 0 0 chr3 93509721 93509781 -66090002 - MT2B LTR ERVL -540 61 2 4 1298 1103 280 77 16 chr3 93509781 93510169 -66089614 - L1_Mur3 LINE L1 -6861 851 440 1 1298 214 189 0 0 chr3 93510175 93510212 -66089571 + B1_Mur2 SINE Alu 79 115 -34 1 1298 704 157 174 0 chr3 93512185 93512300 -66087483 - B1_Mus2 SINE Alu -11 136 2 1 1298 4159 175 55 22 chr3 93512564 93513426 -66086357 - RLTR13D6 LTR ERVK -6 923 1 1 1298 753 131 35 35 chr3 93513436 93513610 -66086173 + Lx LINE L1 6481 6654 0 1 1298 432 220 11 0 chr3 93513684 93513775 -66086008 - ORR1A2 LTR MaLR -235 92 1 1 1298 3508 38 5 0 chr3 93514592 93514986 -66084797 + MTA_Mm LTR MaLR 1 396 0 1 1298 3605 72 19 82 chr3 93515964 93516478 -66083305 - RLTR45 LTR ERVK 0 482 1 1 1298 7838 45 3 2 chr3 93516478 93517389 -66082394 - RLTR45-int LTR ERVK 0 7244 6333 1 1298 1976 114 13 3 chr3 93517389 93517688 -66082095 - RLTR13B1 LTR ERVK -385 508 207 1 1298 8519 41 2 5 chr3 93517710 93518721 -66081062 - RLTR45-int LTR ERVK -1172 6072 5065 1 1298 4042 83 30 31 chr3 93518714 93519322 -66080461 - RLTR45-int LTR ERVK -3258 3986 3380 1 1298 11826 44 48 6 chr3 93519292 93521107 -66078676 - RLTR45-int LTR ERVK -4032 3212 1322 1 1298 1173 43 0 0 chr3 93521869 93522007 -66077776 - RLTR45-int LTR ERVK -6426 818 681 1 1298 4380 77 107 17 chr3 93522305 93522940 -66076843 - RLTR45-int LTR ERVK -6552 692 1 1 1298 3621 68 19 82 chr3 93522940 93523454 -66076329 - RLTR45 LTR ERVK 0 482 1 1 1298 245 51 0 25 chr3 93524343 93524383 -66075400 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 2 1298 1217 64 0 0 chr3 93524387 93524528 -66075255 - B1_Mus2 SINE Alu -6 141 1 2 1298 191 61 0 29 chr3 93526029 93526063 -66073720 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 2 1298 711 84 0 0 chr3 93526085 93526180 -66073603 + B1_Mm SINE Alu 1 95 -52 2 1298 8400 35 7 1 chr3 93526181 93527646 -66072137 - L1Md_F2 LINE L1 -248 6334 4861 2 1298 4031 40 0 0 chr3 93527646 93528098 -66071685 + L1Md_T LINE L1 6131 6582 0 2 1298 6313 180 10 46 chr3 93528098 93528337 -66071446 - L1_Mur2 LINE L1 -1007 4870 4669 2 1298 22 0 0 0 chr3 93528337 93528359 -66071424 + AT_rich Low_complexity Low_complexity 1 22 0 2 1298 238 325 47 93 chr3 93529030 93529046 -66070737 - MT2B2 LTR ERVL -308 276 217 2 1298 442 263 40 0 chr3 93529046 93529145 -66070638 - PB1D10 SINE Alu -9 108 6 2 1298 238 325 47 93 chr3 93529145 93529159 -66070624 - MT2B2 LTR ERVL -308 216 154 2 1298 472 41 0 52 chr3 93529175 93529252 -66070531 + L1Md_F3 LINE L1 6512 6584 0 3 1298 822 140 88 0 chr3 93529613 93529749 -66070034 - B1_Mur3 SINE Alu -1 148 1 3 1298 290 286 91 0 chr3 93530217 93530294 -66069489 - B1F SINE Alu -60 89 6 3 1298 219 250 16 0 chr3 93532195 93532259 -66067524 + CT-rich Low_complexity Low_complexity 2 66 0 3 1298 447 229 45 18 chr3 93532361 93532472 -66067311 - L1VL4 LINE L1 -5704 598 485 3 1298 4933 147 39 3 chr3 93532450 93533326 -66066457 + L1_Mur2 LINE L1 3410 4316 -1561 3 1298 593 236 57 0 chr3 93533353 93533493 -66066290 + Lx LINE L1 6244 6391 -263 3 1298 674 228 35 109 chr3 93533516 93533789 -66065994 - MT2A LTR ERVL -133 468 100 3 1298 445 131 0 14 chr3 93534826 93534896 -66064887 - RLTR14-int LTR ERV1 -5052 265 197 3 1298 1186 184 22 0 chr3 93534974 93535197 -66064586 + RMER3D-int LTR ERVK 1175 1402 -7557 3 1298 310 320 48 55 chr3 93535533 93535824 -66063959 + MuRRS-int LTR ERV1 1928 2216 -2474 4 1298 280 206 87 14 chr3 93536090 93536159 -66063624 + 4.5SRNA scRNA scRNA 13 86 -8 4 1298 919 67 0 0 chr3 93536098 93536217 -66063566 + B1_Mus1 SINE Alu 30 148 0 4 1298 5500 196 59 62 chr3 93536222 93537714 -66062069 + RMER3D-int LTR ERVK 1352 2839 -3 3 1298 1685 127 17 3 chr3 93537726 93538019 -66061764 + RLTR31_Mm LTR ERVK 24 320 -241 3 1298 958 196 6 0 chr3 93538017 93538190 -66061593 - ORR1C1 LTR MaLR -95 283 110 4 1298 359 251 0 25 chr3 93538279 93538368 -66061415 - ORR1A4 LTR MaLR -157 189 94 4 1298 370 252 199 28 chr3 93538487 93538703 -66061080 - RLTR14-int LTR ERV1 -4864 453 201 4 1298 2482 197 58 11 chr3 93538705 93539274 -66060509 - RMER6A LTR ERVK 0 756 161 4 1298 1299 97 0 21 chr3 93539246 93539276 -66060507 - B2_Mm1t SINE B2 -6 187 161 4 1298 423 0 0 0 chr3 93539276 93539323 -66060460 + (TTTA)n Simple_repeat Simple_repeat 3 49 0 4 1298 1299 97 0 21 chr3 93539323 93539482 -66060301 - B2_Mm1t SINE B2 -33 160 2 4 1298 1023 173 5 11 chr3 93539482 93539666 -66060117 - RMER6A LTR ERVK -573 183 1 4 1298 680 253 30 35 chr3 93539666 93539867 -66059916 - RLTR14-int LTR ERV1 -5117 200 1 4 1298 698 267 60 48 chr3 93539928 93540196 -66059587 - Lx6 LINE L1 -10 7450 7180 4 1298 2893 242 56 4 chr3 93540339 93541331 -66058452 - Lx6 LINE L1 -1224 6236 5179 4 1298 995 228 0 0 chr3 93541365 93541558 -66058225 - MTB_Mm LTR MaLR -7 400 208 5 1298 3475 106 39 42 chr3 93541558 93541865 -66057918 + RMER2 LTR ERV1 1 326 -241 5 1298 5244 55 0 7 chr3 93541865 93542482 -66057301 + L1Md_F2 LINE L1 5970 6582 0 5 1298 3475 106 39 42 chr3 93542482 93542743 -66057040 + RMER2 LTR ERV1 327 567 0 5 1298 278 142 333 27 chr3 93543244 93543352 -66056431 - B2_Mm2 SINE B2 -8 187 47 5 1298 1077 118 106 0 chr3 93543383 93543544 -66056239 - B2_Mm1t SINE B2 -14 179 2 5 1298 195 42 0 0 chr3 93543873 93543897 -66055886 + (T)n Simple_repeat Simple_repeat 1 24 0 5 1298 282 340 0 0 chr3 93544314 93544408 -66055375 + MURVY-int LTR ERV1 1309 1402 -3661 5 1298 281 300 125 36 chr3 93545364 93545571 -66054212 + RLTR4_MM-int LTR ERV1 4040 4419 -3359 5 1298 4314 74 2 4 chr3 93545731 93546249 -66053534 - MURVY-LTR LTR ERV1 -2 517 1 5 1298 469 330 22 22 chr3 93546430 93546663 -66053120 + MURVY-int LTR ERV1 4732 4873 -2579 5 1298 1041 96 0 13 chr3 93546670 93546828 -66052955 + L1Md_Gf LINE L1 50 205 -6317 5 1298 371 94 0 19 chr3 93546830 93546884 -66052899 + L1Md_Gf LINE L1 4784 4836 -1050 5 1298 5889 65 17 2 chr3 93546868 93547775 -66052008 - L1Md_F2 LINE L1 -20 6549 5590 5 1298 1672 50 0 0 chr3 93547785 93547983 -66051800 + L1Md_F2 LINE L1 5379 5576 -310 5 1298 239 213 40 0 chr3 93548012 93548087 -66051696 + (CAAA)n Simple_repeat Simple_repeat 1 78 0 6 1298 1169 88 0 13 chr3 93548112 93548262 -66051521 - B1_Mus1 SINE Alu 0 148 1 6 1298 213 65 0 0 chr3 93548282 93548313 -66051470 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 6 1298 1193 69 7 0 chr3 93548313 93548457 -66051326 - B1_Mus1 SINE Alu -3 145 1 6 1298 1212 49 14 0 chr3 93548495 93548639 -66051144 - B1_Mus2 SINE Alu -1 146 1 6 1298 2041 197 57 20 chr3 93548740 93549144 -66050639 + MTC LTR MaLR 3 421 0 6 1298 2400 210 88 57 chr3 93549718 93549929 -66049854 + L1_Mur3 LINE L1 3608 3820 -2060 6 1298 1495 29 81 0 chr3 93549929 93550088 -66049695 + B2_Mm1a SINE B2 2 160 -33 6 1298 243 0 0 0 chr3 93550088 93550115 -66049668 + (TAAA)n Simple_repeat Simple_repeat 3 29 0 6 1298 1495 29 81 0 chr3 93550115 93550128 -66049655 + B2_Mm1a SINE B2 161 186 -7 6 1298 2400 210 88 57 chr3 93550128 93550175 -66049608 + L1_Mur3 LINE L1 3821 3854 -2026 6 1298 1149 116 0 0 chr3 93550175 93550321 -66049462 + B1_Mus2 SINE Alu 2 147 0 6 1298 2400 210 88 57 chr3 93550321 93550833 -66048950 + L1_Mur3 LINE L1 3855 4403 -1477 6 1298 498 209 171 7 chr3 93550827 93550967 -66048816 + L1_Mur3 LINE L1 5352 5514 -366 6 1298 1135 211 84 0 chr3 93551326 93551506 -66048277 + L1_Mur3 LINE L1 5534 5715 -165 6 1298 504 0 0 0 chr3 93551506 93551562 -66048221 + (CA)n Simple_repeat Simple_repeat 1 56 0 7 1298 1135 211 84 0 chr3 93551562 93551618 -66048165 + L1_Mur3 LINE L1 5716 5789 -91 6 1298 508 250 35 0 chr3 93551640 93551756 -66048027 + RMER1B Other Other 594 713 -353 7 1298 370 348 52 0 chr3 93551930 93552065 -66047718 + RMER1C Other Other 28 169 -1173 7 1298 654 202 89 39 chr3 93552077 93552116 -66047667 + Lx6 LINE L1 7270 7315 -145 7 1298 3127 98 131 23 chr3 93552116 93552597 -66047186 - RMER16 LTR ERVK 0 533 1 7 1298 654 202 89 39 chr3 93552597 93552737 -66047046 + Lx6 LINE L1 7316 7458 -2 7 1298 28107 45 15 11 chr3 93552906 93557887 -66041896 + L1Md_F LINE L1 150 5183 -700 7 1298 2486 101 26 3 chr3 93557885 93558262 -66041521 - L1Md_A LINE L1 -5917 807 422 7 1298 3315 217 18 17 chr3 93558362 93559122 -66040661 + Lx4A LINE L1 5019 5779 -98 7 1298 831 66 91 0 chr3 93559122 93559243 -66040540 + B1_Mus2 SINE Alu 11 142 -5 7 1298 189 107 0 0 chr3 93559246 93559274 -66040509 + (TAAA)n Simple_repeat Simple_repeat 3 30 0 7 1298 369 222 48 39 chr3 93559274 93559377 -66040406 + Lx4A LINE L1 5793 5896 -1162 7 1298 2748 43 0 0 chr3 93559377 93559699 -66040084 - RLTRETN_Mm LTR ERVK 0 322 1 8 1298 40675 38 5 8 chr3 93559699 93564561 -66035222 - MMETn-int LTR ERVK 0 4844 1 8 1298 2797 25 0 9 chr3 93564561 93564886 -66034897 - RLTRETN_Mm LTR ERVK 0 322 1 8 1298 931 285 126 16 chr3 93564890 93565420 -66034363 + Lx5 LINE L1 5892 6713 -747 8 1298 1100 83 0 14 chr3 93565420 93565567 -66034216 - B1_Mus2 SINE Alu -1 146 2 8 1298 872 308 55 42 chr3 93565567 93565956 -66033827 + Lx5 LINE L1 6455 6894 -566 8 1298 1324 226 27 34 chr3 93565959 93566408 -66033375 + RLTR31_Mur LTR ERVK 12 437 -4 8 1298 452 268 87 132 chr3 93566559 93566679 -66033104 + Lx5 LINE L1 7180 7306 -154 8 1298 1289 20 0 0 chr3 93566679 93566825 -66032958 + B1_Mm SINE Alu 2 147 0 8 1298 452 268 87 132 chr3 93566825 93566970 -66032813 + Lx5 LINE L1 7307 7433 -27 8 1298 1186 56 0 0 chr3 93566974 93567116 -66032667 - B1_Mus2 SINE Alu -5 142 1 8 1298 1195 254 86 59 chr3 93567201 93567400 -66032383 + RLTR14-int LTR ERV1 1 200 -5117 8 1298 2537 199 60 93 chr3 93567400 93567639 -66032144 + RMER6A LTR ERVK 1 213 -543 8 1298 551 53 0 13 chr3 93567639 93567715 -66032068 + (GAAA)n Simple_repeat Simple_repeat 2 76 0 8 1298 2537 199 60 93 chr3 93567715 93568257 -66031526 + RMER6A LTR ERVK 214 756 0 8 1298 1195 254 86 59 chr3 93568257 93568501 -66031282 + RLTR14-int LTR ERV1 201 456 -4861 8 1298 426 277 11 48 chr3 93568478 93568664 -66031119 + RLTR14-int LTR ERV1 385 563 -4754 8 1298 567 0 0 0 chr3 93568689 93568752 -66031031 + (CAAAA)n Simple_repeat Simple_repeat 5 67 0 8 1298 949 97 45 0 chr3 93569542 93569676 -66030107 + B1_Mus1 SINE Alu 1 140 -8 9 1298 383 0 0 21 chr3 93569676 93569724 -66030059 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 9 1298 22 56 0 0 chr3 93570105 93570141 -66029642 + AT_rich Low_complexity Low_complexity 1 36 0 9 1298 1155 68 7 0 chr3 93570245 93570391 -66029392 - B1_Mus2 SINE Alu 0 147 1 9 1298 761 195 152 79 chr3 93570396 93570743 -66029040 + MT2B LTR ERVL 181 601 0 9 1298 954 252 40 109 chr3 93570804 93570946 -66028837 - RMER17C LTR ERVK 0 410 270 9 1298 1014 130 0 14 chr3 93570946 93571094 -66028689 + B1_Mus1 SINE Alu 2 147 -1 9 1298 954 252 40 109 chr3 93571094 93571374 -66028409 - RMER17C LTR ERVK -141 269 17 9 1298 1262 132 66 59 chr3 93571515 93571701 -66028082 - RMER17C-int LTR ERVK -607 2631 2454 9 1298 1272 72 60 11 chr3 93571701 93571872 -66027911 + B2_Mm1t SINE B2 1 181 -12 9 1298 186 43 0 0 chr3 93571872 93571895 -66027888 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 9 1298 1272 72 60 11 chr3 93571895 93571907 -66027876 + B2_Mm1t SINE B2 182 193 0 9 1298 3282 166 44 37 chr3 93571907 93572628 -66027155 - RMER17C-int LTR ERVK -764 2474 1807 9 1298 8279 75 16 12 chr3 93572633 93574520 -66025263 - L1_Mus1 LINE L1 0 6654 4677 9 1298 1378 192 231 78 chr3 93574529 93575126 -66024657 - RMER17C-int LTR ERVK -1431 1807 1119 9 1298 407 242 70 64 chr3 93575141 93575313 -66024470 - RMER17C-int LTR ERVK -2008 1230 1058 1 1298 395 205 72 0 chr3 93575696 93575779 -66024004 - RMER17C-int LTR ERVK -1532 1706 1618 1 1298 1021 275 55 74 chr3 93575859 93576389 -66023394 - RMER17C-int LTR ERVK -2606 632 113 1 1298 582 209 90 28 chr3 93576541 93576718 -66023065 - RMER17C LTR ERVK -2 408 221 1 1298 808 28 19 0 chr3 93576718 93576825 -66022958 + (GA)n Simple_repeat Simple_repeat 2 110 0 1 1298 701 299 47 102 chr3 93578062 93578400 -66021383 + L1_Mur3 LINE L1 332 634 -7078 1 1298 1133 75 0 7 chr3 93578400 93578548 -66021235 - B1_Mus1 SINE Alu 0 148 2 1 1298 701 299 47 102 chr3 93578548 93578659 -66021124 + L1_Mur3 LINE L1 635 756 -6956 1 1298 6163 88 25 48 chr3 93578671 93578876 -66020907 - L1_Mus2 LINE L1 0 6566 6366 1 1298 2625 44 28 0 chr3 93578876 93579194 -66020589 - IAPLTR2b LTR ERVK 0 327 1 1 1298 6163 88 25 48 chr3 93579194 93579392 -66020391 - L1_Mus2 LINE L1 -201 6365 6177 1 1298 1174 62 7 0 chr3 93579392 93579536 -66020247 + B1_Mm SINE Alu 3 147 0 1 1298 6163 88 25 48 chr3 93579536 93580073 -66019710 - L1_Mus2 LINE L1 -390 6176 5646 1 1298 10442 116 23 45 chr3 93580073 93580802 -66018981 + L1_Mus2 LINE L1 4205 4940 -943 1 1298 2567 86 20 0 chr3 93580802 93581150 -66018633 - L1_Mus1 LINE L1 0 6567 6213 1 1298 10442 113 68 52 chr3 93581150 93582780 -66017003 + L1_Mus2 LINE L1 4941 6566 0 1 1298 5325 92 12 58 chr3 93582791 93583631 -66016152 - RLTR13B4 LTR ERVK 0 803 3 1 1298 376 252 29 0 chr3 93583664 93583767 -66016016 - RLTR14 LTR ERV1 -246 136 31 1 1298 244 292 15 0 chr3 93584305 93584370 -66015413 + ID4 SINE ID 6 71 -12 1 1298 431 291 45 0 chr3 93584955 93585065 -66014718 + B1_Mur4 SINE Alu 25 139 -11 1 1299 201 140 60 0 chr3 93585595 93585645 -66014138 + (CAAA)n Simple_repeat Simple_repeat 2 54 0 1 1299 1106 181 101 4 chr3 93585747 93585985 -66013798 + MTC LTR MaLR 3 263 -158 1 1299 198 0 0 0 chr3 93586007 93586029 -66013754 + (TA)n Simple_repeat Simple_repeat 2 23 0 1 1299 2032 201 62 15 chr3 93586061 93586369 -66013414 + L1_Mur3 LINE L1 5302 5606 -274 1 1299 3607 63 24 4 chr3 93586369 93586834 -66012949 - MT2C_Mm LTR ERVL -1 474 1 1 1299 2032 201 62 15 chr3 93586834 93586989 -66012794 + L1_Mur3 LINE L1 5607 5787 -93 1 1299 272 280 0 0 chr3 93587532 93587607 -66012176 + RMER1B Other Other 600 674 -392 1 1299 277 259 105 12 chr3 93587609 93587695 -66012088 + RMER1B Other Other 648 741 -325 1 1299 448 326 14 14 chr3 93587851 93587991 -66011792 + RMER1C Other Other 28 167 -1175 1 1299 189 0 0 0 chr3 93587991 93588012 -66011771 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 1 1299 632 217 51 0 chr3 93588017 93588174 -66011609 + Lx6 LINE L1 7295 7459 -1 1 1299 458 320 48 39 chr3 93588459 93588667 -66011116 - B3 SINE B2 -6 210 1 1 1299 3765 234 48 44 chr3 93588968 93590642 -66009141 + Lx5 LINE L1 5019 6691 -359 1 1299 392 184 0 14 chr3 93590686 93590824 -66008959 + (CATATA)n Simple_repeat Simple_repeat 1 136 0 1 1299 990 242 35 88 chr3 93590887 93591288 -66008495 + RLTR31_Mur LTR ERVK 1 434 -7 1 1299 1045 89 0 0 chr3 93591288 93591423 -66008360 + B1_Mus1 SINE Alu 2 136 -12 1 1299 185 0 40 0 chr3 93591424 93591449 -66008334 + (CAA)n Simple_repeat Simple_repeat 2 27 0 1 1299 423 0 0 0 chr3 93591456 93591503 -66008280 + (CATA)n Simple_repeat Simple_repeat 2 48 0 1 1299 990 238 2 106 chr3 93591503 93591571 -66008212 + RLTR31_Mur LTR ERVK 336 392 -161 1 1299 715 278 66 55 chr3 93591720 93591994 -66007789 + Lx6 LINE L1 7180 7456 -4 1 1299 1232 102 6 11 chr3 93592014 93592192 -66007591 + B2_Mm2 SINE B2 1 177 -18 1 1299 1042 278 103 38 chr3 93592232 93592433 -66007350 + RLTR14-int LTR ERV1 1 200 -5117 1 1299 2817 183 97 24 chr3 93592433 93592626 -66007157 + RMER6A LTR ERVK 1 207 -549 1 1299 243 0 0 0 chr3 93592626 93592653 -66007130 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 1299 911 129 7 0 chr3 93592653 93592792 -66006991 - B1_Mus1 SINE Alu -8 140 1 1 1299 2817 183 97 24 chr3 93592792 93593302 -66006481 + RMER6A LTR ERVK 208 755 -1 1 1299 1042 278 103 38 chr3 93593302 93593526 -66006257 + RLTR14-int LTR ERV1 201 454 -4863 1 1299 339 266 91 0 chr3 93593560 93593703 -66006080 + RLTR14-int LTR ERV1 422 577 -4740 1 1299 1142 62 7 0 chr3 93593731 93593876 -66005907 + B1_Mm SINE Alu 2 147 0 1 1299 220 65 65 0 chr3 93593876 93593922 -66005861 + (CAAAAA)n Simple_repeat Simple_repeat 6 54 0 1 1299 1070 88 0 0 chr3 93594683 93594820 -66004963 + B1_Mus1 SINE Alu 2 138 -10 1 1299 801 73 0 0 chr3 93594820 93594929 -66004854 + (GAAA)n Simple_repeat Simple_repeat 2 110 0 1 1299 752 253 118 68 chr3 93595253 93595776 -66004007 + MT2B LTR ERVL 2 601 0 1 1299 450 36 0 0 chr3 93595894 93595950 -66003833 + (GA)n Simple_repeat Simple_repeat 1 56 0 1 1299 597 245 72 57 chr3 93595953 93596022 -66003761 - RMER17C LTR ERVK -135 275 208 1 1299 636 38 0 0 chr3 93596022 93596101 -66003682 + (GA)n Simple_repeat Simple_repeat 2 80 0 1 1299 597 245 72 57 chr3 93596101 93596295 -66003488 - RMER17C LTR ERVK -203 207 8 1 1299 4944 143 35 43 chr3 93596302 93596668 -66003115 - RMER17C-int LTR ERVK 0 3238 2894 1 1299 309 51 0 0 chr3 93596668 93596707 -66003076 + (TAG)n Simple_repeat Simple_repeat 3 41 0 1 1299 4944 143 35 43 chr3 93596707 93597085 -66002698 - RMER17C-int LTR ERVK -345 2893 2501 1 1299 324 0 0 0 chr3 93597085 93597121 -66002662 + (CA)n Simple_repeat Simple_repeat 2 37 0 1 1299 4944 162 36 39 chr3 93597121 93598218 -66001565 - RMER17C-int LTR ERVK -736 2502 1498 1 1299 235 217 16 16 chr3 93598218 93598279 -66001504 + ZP3AR Satellite Satellite 28 88 -124 1 1299 722 22 0 0 chr3 93598232 93598324 -66001459 + BC1_Mm scRNA scRNA 1 92 -60 1 1299 701 155 211 91 chr3 93598393 93598592 -66001191 - RMER17C-int LTR ERVK -1873 1365 1143 1 1299 292 209 15 15 chr3 93599007 93599075 -66000708 - RMER17C-int LTR ERVK -2008 1230 1163 1 1299 370 111 37 0 chr3 93599508 93599562 -66000221 - RMER17C-int LTR ERVK -1565 1673 1618 1 1299 601 228 26 121 chr3 93599729 93599919 -65999864 - RMER17C-int LTR ERVK -3066 172 1 1 1299 841 167 48 48 chr3 93599919 93600127 -65999656 - RMER17C LTR ERVK 0 410 203 1 1299 447 118 78 0 chr3 93601854 93601956 -65997827 + Lx3A LINE L1 6856 6965 -16 1 1299 405 0 0 0 chr3 93601957 93602002 -65997781 + (TAAAA)n Simple_repeat Simple_repeat 1 45 0 1 1299 1591 172 45 42 chr3 93602015 93602080 -65997703 + ORR1B1 LTR MaLR 41 103 -291 1 1299 4444 117 6 66 chr3 93602080 93602879 -65996904 + RMER17A LTR ERVK 1 751 0 1 1299 1591 172 45 42 chr3 93602879 93603166 -65996617 + ORR1B1 LTR MaLR 104 394 0 1 1299 10689 24 0 0 chr3 93603219 93605117 -65994666 - L1Md_T LINE L1 0 6582 4685 1 1299 237 302 74 25 chr3 93605118 93605228 -65994555 + B3 SINE B2 18 133 -83 1 1299 655 146 43 121 chr3 93605228 93605368 -65994415 + ORR1A2 LTR MaLR 1 136 -242 1 1299 1785 108 138 37 chr3 93605368 93605773 -65994010 + RLTR47_MM LTR ERV1 2 447 -85 1 1299 315 0 0 0 chr3 93605776 93605811 -65993972 + (CAA)n Simple_repeat Simple_repeat 2 36 0 1 1299 1218 164 32 0 chr3 93605811 93606031 -65993752 + ORR1A2 LTR MaLR 93 319 -8 1 1299 2098 148 79 22 chr3 93606120 93606559 -65993224 + BGLII_B LTR ERVK 3 435 -6 1 1299 4891 180 28 50 chr3 93607356 93607648 -65992135 + L1_Mur3 LINE L1 4728 5005 -875 1 1299 623 48 0 12 chr3 93607648 93607732 -65992051 + (GAAA)n Simple_repeat Simple_repeat 3 85 0 1 1299 4891 180 28 50 chr3 93607732 93607972 -65991811 + L1_Mur3 LINE L1 5006 5248 -632 1 1299 1309 167 185 63 chr3 93607972 93608323 -65991460 - RMER10B LTR ERVL 0 398 5 1 1299 4891 180 28 50 chr3 93608323 93608349 -65991434 + L1_Mur3 LINE L1 5249 5266 -614 1 1299 207 0 0 0 chr3 93608349 93608372 -65991411 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 1299 4891 180 28 50 chr3 93608372 93608898 -65990885 + L1_Mur3 LINE L1 5267 5790 -90 1 1299 604 246 0 0 chr3 93608945 93609063 -65990720 + RMER1B Other Other 594 711 -355 1 1299 815 236 33 51 chr3 93609256 93609470 -65990313 + RMER1C Other Other 32 241 -1101 1 1299 462 36 0 0 chr3 93609470 93609526 -65990257 + (TAGA)n Simple_repeat Simple_repeat 3 58 0 1 1299 522 83 0 0 chr3 93609526 93609597 -65990186 + (CA)n Simple_repeat Simple_repeat 2 73 0 1 1299 262 330 70 0 chr3 93609610 93609725 -65990058 + RMER1B Other Other 49 171 -895 1 1299 288 290 66 42 chr3 93609927 93610083 -65989700 + RMER1C Other Other 386 533 -809 1 1299 414 244 23 167 chr3 93610084 93610300 -65989483 + ORR1B1 LTR MaLR 49 233 -161 1 1299 1122 201 76 0 chr3 93610389 93610638 -65989145 + ORR1C1 LTR MaLR 110 377 -1 1 1299 2640 258 43 59 chr3 93610638 93611429 -65988354 + Lx6 LINE L1 6676 7453 -7 1 1299 3380 55 2 15 chr3 93611623 93612028 -65987755 - MTB LTR MaLR 0 400 1 1 1299 273 257 24 110 chr3 93612121 93612191 -65987592 - B3 SINE B2 -6 210 152 1 1299 2348 199 94 25 chr3 93612191 93612702 -65987081 - RMER2 LTR ERV1 0 567 22 1 1299 828 22 0 0 chr3 93612702 93612794 -65986989 + L1Md_T LINE L1 5495 5586 -297 1 1299 9536 9 0 0 chr3 93612794 93613790 -65985993 + L1Md_T LINE L1 5587 6582 0 1 1299 641 237 22 7 chr3 93613804 93613940 -65985843 - B3 SINE B2 -74 142 5 1 1299 2246 240 139 20 chr3 93614674 93615406 -65984377 - Lx7 LINE L1 -1 7695 6877 1 1299 251 326 61 7 chr3 93615637 93615785 -65983998 - L1MC2 LINE L1 -25 6319 6164 1 1299 252 129 15 46 chr3 93616382 93616447 -65983336 + T-rich Low_complexity Low_complexity 2 64 0 1 1299 222 264 169 24 chr3 93616449 93616573 -65983210 + L4 LINE RTE 205 346 -1683 1 1299 2884 92 0 100 chr3 93616912 93617372 -65982411 - L1_Mus4 LINE L1 -1 6635 6222 1 1299 27 0 0 0 chr3 93617870 93617897 -65981886 + AT_rich Low_complexity Low_complexity 1 27 0 1 1299 1514 217 60 3 chr3 93617941 93618255 -65981528 - MTC LTR MaLR -89 332 1 1 1299 527 43 0 14 chr3 93618304 93618375 -65981408 + (CATA)n Simple_repeat Simple_repeat 2 71 0 1 1299 827 123 59 40 chr3 93618408 93618560 -65981223 - L1_Mus2 LINE L1 -1 6565 6411 1 1299 658 247 23 12 chr3 93618572 93618744 -65981039 - RodERV21-int LTR ERV1 -4530 461 288 1 1299 1022 232 17 11 chr3 93619015 93619302 -65980481 - L1_Mur3 LINE L1 -2451 3429 3141 1 1299 714 226 65 111 chr3 93619319 93619339 -65980444 - L1_Mur3 LINE L1 -5796 1290 1272 1 1299 477 0 0 0 chr3 93619339 93619392 -65980391 + (TTTA)n Simple_repeat Simple_repeat 2 54 0 1 1299 1008 42 75 0 chr3 93619397 93619517 -65980266 - B1_Mus2 SINE Alu -16 131 3 1 1299 1070 231 55 88 chr3 93619517 93619952 -65979831 - L1_Mur3 LINE L1 -5819 1267 913 1 1299 3577 174 26 6 chr3 93619952 93620600 -65979183 - MYSERV6-int LTR ERVK -7452 1507 847 1 1299 343 182 88 33 chr3 93620600 93620691 -65979092 + L1_Mur3 LINE L1 4413 4508 -1372 1 1299 3135 198 39 116 chr3 93620724 93620956 -65978827 + L1_Mur3 LINE L1 4892 5056 -824 1 1299 3284 58 20 0 chr3 93620956 93621353 -65978430 - L1Md_F2 LINE L1 0 6582 6178 1 1299 3135 198 39 116 chr3 93621353 93621539 -65978244 + L1_Mur3 LINE L1 5057 5231 -649 1 1299 405 70 0 0 chr3 93621539 93621596 -65978187 + (CA)n Simple_repeat Simple_repeat 2 58 0 1 1299 3135 198 39 116 chr3 93621596 93621688 -65978095 + L1_Mur3 LINE L1 5232 5298 -582 1 1299 3202 76 2 5 chr3 93621688 93622085 -65977698 - MTA_Mm LTR MaLR 0 396 1 1 1299 3135 198 39 116 chr3 93622085 93622543 -65977240 + L1_Mur3 LINE L1 5299 5787 -93 1 1299 340 265 8 93 chr3 93622543 93622672 -65977111 + RMER1B Other Other 580 697 -369 1 1299 469 290 43 28 chr3 93622670 93622881 -65976902 + Lx4B LINE L1 6750 7058 0 1 1299 1685 215 53 30 chr3 93622883 93623320 -65976463 + RMER6A LTR ERVK 310 756 0 1 1299 310 348 44 114 chr3 93623885 93624112 -65975671 + MTEa LTR MaLR 7 217 -162 1 1299 279 0 0 0 chr3 93624404 93624435 -65975348 + (TA)n Simple_repeat Simple_repeat 2 32 0 1 1299 225 0 0 0 chr3 93624435 93624460 -65975323 + (T)n Simple_repeat Simple_repeat 1 25 0 1 1299 1207 62 14 0 chr3 93624503 93624648 -65975135 + B1_Mm SINE Alu 1 147 0 2 1299 180 0 0 0 chr3 93624656 93624676 -65975107 + (CAA)n Simple_repeat Simple_repeat 2 21 0 2 1299 764 207 110 106 chr3 93624684 93625082 -65974701 + MT2B LTR ERVL 152 600 -1 2 1299 641 248 31 172 chr3 93625145 93625622 -65974161 - RMER17C LTR ERVK 0 410 1 2 1299 3825 153 73 110 chr3 93625622 93625979 -65973804 - RMER17C-int LTR ERVK 0 3238 2896 2 1299 207 0 0 0 chr3 93625979 93626002 -65973781 + (TG)n Simple_repeat Simple_repeat 2 24 0 2 1299 3825 153 73 110 chr3 93626002 93626030 -65973753 - RMER17C-int LTR ERVK -343 2895 2880 2 1299 633 61 0 0 chr3 93626030 93626112 -65973671 + (GAA)n Simple_repeat Simple_repeat 3 84 0 2 1299 5437 170 59 94 chr3 93626112 93626404 -65973379 - RMER17C-int LTR ERVK -359 2879 2604 2 1299 256 216 0 19 chr3 93626404 93626456 -65973327 + LSU-rRNA_Hsa rRNA rRNA 4202 4252 -783 2 1299 5437 170 59 94 chr3 93626456 93628020 -65971763 - RMER17C-int LTR ERVK -359 2603 1119 2 1299 386 269 86 59 chr3 93628035 93628221 -65971562 - RMER17C-int LTR ERVK -2008 1230 1040 2 1299 355 82 0 20 chr3 93628643 93628693 -65971090 - RMER17C-int LTR ERVK -1556 1682 1634 2 1299 1637 239 71 96 chr3 93628785 93629432 -65970351 - RMER17C-int LTR ERVK -2606 632 2 2 1299 493 229 81 59 chr3 93629451 93629637 -65970146 - RMER17C LTR ERVK -30 380 191 2 1299 1422 50 0 0 chr3 93629637 93629816 -65969967 + (GA)n Simple_repeat Simple_repeat 2 180 0 2 1299 430 96 0 27 chr3 93631054 93631129 -65968654 + (CAA)n Simple_repeat Simple_repeat 1 73 0 2 1299 469 308 23 15 chr3 93631521 93631653 -65968130 + B3 SINE B2 17 149 -67 2 1299 905 234 13 18 chr3 93632033 93632259 -65967524 - URR1A DNA MER1_type -1 225 1 2 1299 727 339 52 26 chr3 93632259 93633082 -65966701 + L1_Mur3 LINE L1 50 657 -7071 2 1299 1098 135 0 0 chr3 93633082 93633260 -65966523 + (TTTC)n Simple_repeat Simple_repeat 3 180 0 2 1299 621 72 0 0 chr3 93633264 93633347 -65966436 + (TTCC)n Simple_repeat Simple_repeat 4 86 0 2 1299 29 28 0 0 chr3 93633347 93633383 -65966400 + AT_rich Low_complexity Low_complexity 1 36 0 2 1299 741 140 8 8 chr3 93633414 93633544 -65966239 - Lx LINE L1 0 6654 6525 2 1299 419 170 165 31 chr3 93633548 93633645 -65966138 + L1_Mur3 LINE L1 675 784 -6944 2 1299 504 263 91 25 chr3 93633793 93633992 -65965791 - Lx6 LINE L1 -26 7434 7223 2 1299 468 0 0 0 chr3 93633993 93634045 -65965738 + (GA)n Simple_repeat Simple_repeat 1 52 0 2 1299 466 269 54 6 chr3 93634058 93634226 -65965557 + L1_Mur3 LINE L1 3843 4018 -1862 2 1299 2783 124 46 42 chr3 93634226 93634706 -65965077 + RLTR45 LTR ERVK 1 482 0 2 1299 3697 106 28 17 chr3 93634706 93635244 -65964539 + RLTR45-int LTR ERVK 1 544 -6700 2 1299 1733 129 36 112 chr3 93636031 93636423 -65963360 + RLTR45-int LTR ERVK 549 910 -6334 2 1299 707 143 0 0 chr3 93636546 93636665 -65963118 + RLTR45-int LTR ERVK 913 1031 -6213 2 1299 347 318 29 29 chr3 93637001 93637275 -65962508 + IAPLTR3-int LTR ERVK 2376 2841 -5376 2 1299 14538 217 16 12 chr3 93637313 93641955 -65957828 + IAPLTR3-int LTR ERVK 2920 7268 -412 2 1299 2975 49 3 3 chr3 93641955 93642300 -65957483 + IAPLTR4 LTR ERVK 1 345 0 2 1299 939 242 13 26 chr3 93642300 93642529 -65957254 - L1_Mur3 LINE L1 -3891 1989 1764 2 1299 429 284 8 17 chr3 93642709 93642827 -65956956 + RLTR14-int LTR ERV1 212 328 -4989 2 1299 1197 268 15 9 chr3 93642827 93643159 -65956624 + RLTR14 LTR ERV1 31 364 -18 2 1299 360 0 0 0 chr3 93643551 93643591 -65956192 + (TG)n Simple_repeat Simple_repeat 2 41 0 2 1299 6355 172 29 44 chr3 93643757 93644362 -65955421 - MYSERV6-int LTR ERVK -6775 2184 1567 2 1299 207 0 0 0 chr3 93644362 93644385 -65955398 + (TTG)n Simple_repeat Simple_repeat 2 24 0 2 1299 6355 172 29 44 chr3 93644385 93645089 -65954694 - MYSERV6-int LTR ERVK -7393 1566 895 2 1299 463 347 34 68 chr3 93645197 93645519 -65954264 + RLTR23 LTR ERV1 118 428 -2 2 1299 227 54 107 0 chr3 93645625 93645681 -65954102 + T-rich Low_complexity Low_complexity 5 66 0 2 1299 332 338 15 7 chr3 93646649 93646786 -65952997 + MuRRS4-int LTR ERV1 1163 1300 -6152 2 1299 1943 68 0 4 chr3 93646798 93647048 -65952735 - L1Md_F2 LINE L1 -508 6074 5826 2 1299 529 17 0 0 chr3 93647046 93647104 -65952679 + L1Md_T LINE L1 5529 5586 -297 2 1299 8854 35 1 1 chr3 93647104 93648099 -65951684 + L1Md_T LINE L1 5587 6581 -1 2 1299 2013 56 0 4 chr3 93648104 93648355 -65951428 - L1Md_F2 LINE L1 -508 6074 5825 2 1299 3812 69 2 12 chr3 93648338 93648836 -65950947 + L1Md_F2 LINE L1 6067 6559 -23 2 1299 2164 58 0 154 chr3 93648836 93649181 -65950602 + RLTR10B LTR ERVK 1 292 0 2 1299 2246 87 13 8 chr3 93649181 93649657 -65950126 + MMERVK10C-int LTR ERVK 1 399 -7182 2 1299 39895 67 2 1 chr3 93649655 93654593 -65945190 + MMERVK10C-int LTR ERVK 870 5810 -1771 2 1299 4654 98 12 7 chr3 93654579 93655577 -65944206 + MMERVK10C-int LTR ERVK 6646 7680 0 2 1299 2328 58 3 49 chr3 93655577 93655883 -65943900 + RLTR10B LTR ERVK 1 292 0 2 1299 28 0 0 0 chr3 93655889 93655917 -65943866 + AT_rich Low_complexity Low_complexity 1 28 0 2 1299 357 262 70 83 chr3 93655917 93656208 -65943575 + MuRRS4-int LTR ERV1 1247 1779 -5999 2 1299 3592 40 0 0 chr3 93657139 93657535 -65942248 + MTA_Mm LTR MaLR 1 396 0 2 1299 2675 90 16 24 chr3 93657580 93657956 -65941827 - L1_Mus1 LINE L1 0 6567 6195 2 1299 5397 87 33 1 chr3 93657958 93658835 -65940948 - L1_Mus1 LINE L1 -565 6002 5099 2 1299 475 155 35 52 chr3 93658835 93658936 -65940847 - L1Md_T LINE L1 0 6582 6484 2 1299 1457 168 55 73 chr3 93658936 93659264 -65940519 - RLTRETN_Mm LTR ERVK 0 322 1 2 1299 475 155 35 52 chr3 93659264 93659278 -65940505 - L1Md_T LINE L1 -99 6483 6470 2 1299 9190 149 27 32 chr3 93659278 93661001 -65938782 - MMETn-int LTR ERVK -860 5307 3219 2 1299 1245 175 0 0 chr3 93661025 93661214 -65938569 - MMETn-int LTR ERVK -2692 4714 4526 2 1299 285 219 95 24 chr3 93661214 93661298 -65938485 + RLTR25B LTR ERVK 408 497 -531 2 1299 773 101 0 0 chr3 93661239 93661348 -65938435 + B1_Mus2 SINE Alu 39 147 0 2 1299 6669 153 26 19 chr3 93661354 93662863 -65936920 - MMETn-int LTR ERVK -3321 4085 2356 2 1299 3615 97 11 59 chr3 93663108 93663763 -65936020 - MMETn-int LTR ERVK -4730 2676 1654 2 1299 1158 136 17 0 chr3 93663756 93663932 -65935851 - MMETn-int LTR ERVK -5162 2244 2066 2 1299 23107 8 0 0 chr3 93664168 93667420 -65932363 - L1Md_A LINE L1 0 6582 3332 2 1299 1450 105 26 17 chr3 93667420 93667652 -65932131 - MMETn-int LTR ERVK -3670 1174 941 2 1299 1334 128 188 10 chr3 93667657 93667950 -65931833 - IAPLTR4 LTR ERVK 0 345 1 2 1299 6146 91 1 59 chr3 93667953 93668896 -65930887 - MMETn-int LTR ERVK -3902 942 55 2 1299 3287 180 3 25 chr3 93668896 93668950 -65930833 - L1_Mus1 LINE L1 -59 6579 6485 2 1299 1379 168 55 73 chr3 93668950 93669278 -65930505 - RLTRETN_Mm LTR ERVK 0 322 1 2 1299 3287 84 0 11 chr3 93669278 93669701 -65930082 - L1_Mus1 LINE L1 -83 6484 6064 2 1299 6534 108 2 47 chr3 93669701 93670734 -65929049 - L1_Mm LINE L1 -776 5107 4121 2 1299 7066 90 4 21 chr3 93670740 93671905 -65927878 + L1_Mus2 LINE L1 5422 6566 0 2 1299 451 246 51 23 chr3 93671925 93672100 -65927683 - L1_Mur3 LINE L1 -2560 3320 3141 2 1299 1271 248 50 6 chr3 93672108 93672589 -65927194 - L1_Mur3 LINE L1 -5787 1299 861 2 1299 850 199 23 0 chr3 93672594 93672770 -65927013 - ORR1B1 LTR MaLR -8 386 207 2 1299 515 226 105 0 chr3 93672838 93672971 -65926812 - B1_Mur3 SINE Alu 0 149 3 2 1299 348 188 0 2 chr3 93673002 93673069 -65926714 - MT2B LTR ERVL -408 67 2 2 1299 680 273 85 22 chr3 93673069 93673510 -65926273 - L1_Mur3 LINE L1 -6861 867 456 2 1299 315 0 0 0 chr3 93673617 93673652 -65926131 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 2 1299 547 202 58 0 chr3 93675472 93675576 -65924207 - B1_Mus2 SINE Alu -36 111 2 2 1299 853 197 48 24 chr3 93676040 93676248 -65923535 + URR1A DNA MER1_type 6 218 -8 2 1299 328 336 30 0 chr3 93676643 93676774 -65923009 - B3A SINE B2 -47 151 17 2 1299 235 224 39 13 chr3 93678528 93678605 -65921178 + (TCTCTG)n Simple_repeat Simple_repeat 6 84 0 2 1299 452 176 0 0 chr3 93678710 93678784 -65920999 - MusHAL1 LINE L1 -2984 370 297 2 1299 4670 154 53 10 chr3 93678777 93679647 -65920136 + L1_Mur2 LINE L1 3410 4316 -1561 2 1299 547 252 58 0 chr3 93679675 93679814 -65919969 + Lx LINE L1 6245 6391 -263 2 1299 632 235 40 90 chr3 93679837 93680110 -65919673 - MT2A LTR ERVL -133 468 100 2 1299 429 145 0 14 chr3 93681151 93681221 -65918562 - RLTR14-int LTR ERV1 -5052 265 197 2 1299 3534 172 41 21 chr3 93681299 93682007 -65917776 + MYSERV6-int LTR ERVK 1175 1896 -7063 2 1299 702 286 9 0 chr3 93682062 93682282 -65917501 - RLTR14 LTR ERV1 -15 367 146 2 1299 1085 91 0 0 chr3 93682282 93682425 -65917358 + B1_Mus1 SINE Alu 1 143 -5 2 1299 210 37 0 0 chr3 93682430 93682457 -65917326 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2 1299 3029 147 29 13 chr3 93682476 93683029 -65916754 + RMER2 LTR ERV1 6 567 0 2 1299 23 0 0 0 chr3 93683986 93684009 -65915774 + AT_rich Low_complexity Low_complexity 1 23 0 2 1299 474 81 61 0 chr3 93684147 93684246 -65915537 + (CAGAGA)n Simple_repeat Simple_repeat 2 106 0 2 1299 4245 29 0 0 chr3 93684372 93684854 -65914929 + LTRIS_Mm LTR ERV1 1 482 0 2 1299 234 160 0 0 chr3 93685232 93685282 -65914501 + A-rich Low_complexity Low_complexity 1 50 0 2 1299 837 194 114 0 chr3 93685433 93685634 -65914149 + MTC LTR MaLR 3 226 -195 2 1299 3579 102 65 9 chr3 93685634 93686171 -65913612 - RMER2 LTR ERV1 0 567 1 2 1299 671 313 42 35 chr3 93686585 93686873 -65912910 - MuRRS4-int LTR ERV1 -1109 3954 3724 2 1299 3083 230 126 25 chr3 93686873 93687743 -65912040 + RMER17B LTR ERVK 1 958 0 2 1299 39161 40 0 3 chr3 93687779 93694023 -65905760 - L1Md_T LINE L1 0 6585 262 2 1299 462 335 13 13 chr3 93694030 93694263 -65905520 - MuRRS4-int LTR ERV1 -2579 4873 4732 2 1299 4071 76 2 4 chr3 93694444 93694962 -65904821 + MURVY-LTR LTR ERV1 1 517 -2 2 1299 293 298 126 35 chr3 93695122 93695319 -65904464 - MuRRS4-int LTR ERV1 -3359 4419 4049 2 1299 279 340 0 0 chr3 93696285 93696379 -65903404 - MuRRS4-int LTR ERV1 -3661 1402 1309 2 1299 213 39 0 0 chr3 93696796 93696822 -65902961 + (A)n Simple_repeat Simple_repeat 1 26 0 2 1299 1042 112 106 0 chr3 93697151 93697312 -65902471 + B2_Mm1t SINE B2 2 179 -14 2 1299 259 142 333 27 chr3 93697343 93697451 -65902332 + B2_Mm2 SINE B2 47 187 -8 2 1299 3235 110 39 42 chr3 93697952 93698213 -65901570 - RMER2 LTR ERV1 0 567 327 2 1299 5003 54 0 7 chr3 93698213 93698830 -65900953 - L1Md_F2 LINE L1 0 6582 5970 2 1299 3235 110 39 42 chr3 93698830 93699137 -65900646 - RMER2 LTR ERV1 -241 326 1 2 1299 929 228 0 0 chr3 93699137 93699330 -65900453 + MTB_Mm LTR MaLR 208 400 -7 2 1299 2784 240 63 7 chr3 93699364 93700351 -65899432 + Lx6 LINE L1 5179 6236 -1224 2 1299 705 267 60 48 chr3 93700494 93700762 -65899021 + Lx6 LINE L1 7180 7450 -10 2 1299 685 253 30 35 chr3 93700823 93701024 -65898759 + RLTR14-int LTR ERV1 1 200 -5117 2 1299 961 173 5 11 chr3 93701024 93701208 -65898575 + RMER6A LTR ERVK 1 183 -573 2 1299 1230 75 0 6 chr3 93701208 93701367 -65898416 + B2_Mm1t SINE B2 2 160 -33 2 1299 387 0 0 0 chr3 93701367 93701410 -65898373 + (TAAA)n Simple_repeat Simple_repeat 3 45 0 2 1299 1230 75 0 6 chr3 93701410 93701425 -65898358 + B2_Mm1t SINE B2 161 175 -18 2 1299 2356 189 59 11 chr3 93701420 93701982 -65897801 + RMER6A LTR ERVK 168 756 0 2 1299 319 162 12 12 chr3 93702145 93702226 -65897557 + CT-rich Low_complexity Low_complexity 2 82 0 2 1299 333 251 0 25 chr3 93702319 93702408 -65897375 + MTB_Mm LTR MaLR 94 189 -157 2 1299 928 195 0 0 chr3 93702497 93702671 -65897112 + ORR1C1 LTR MaLR 110 283 -95 2 1299 1585 127 17 3 chr3 93702669 93702962 -65896821 - RLTR31_Mm LTR ERVK -241 320 24 2 1299 3394 201 40 47 chr3 93702974 93703852 -65895931 - RMER3D-int LTR ERVK -3 2839 1968 2 1299 218 32 32 0 chr3 93704267 93704298 -65895485 + (GAAAA)n Simple_repeat Simple_repeat 2 33 0 2 1299 1013 124 106 0 chr3 93704627 93704788 -65894995 + B2_Mm1t SINE B2 2 179 -14 2 1299 259 142 333 27 chr3 93704807 93704915 -65894868 + B2_Mm2 SINE B2 47 187 -8 2 1299 823 249 22 403 chr3 93705365 93705416 -65894367 + MTB_Mm LTR MaLR 178 223 -196 2 1299 3540 110 39 40 chr3 93705416 93705984 -65893799 - RMER2 LTR ERV1 0 567 1 2 1299 823 246 5 20 chr3 93705984 93706180 -65893603 + MTB_Mm LTR MaLR 207 399 -8 2 1299 2760 234 67 14 chr3 93706214 93707206 -65892577 + Lx6 LINE L1 5179 6236 -1224 2 1299 726 270 40 44 chr3 93707348 93707573 -65892210 + Lx6 LINE L1 7180 7403 -57 2 1299 665 254 35 40 chr3 93707672 93707873 -65891910 + RLTR14-int LTR ERV1 1 200 -5117 2 1299 927 184 5 11 chr3 93707873 93708057 -65891726 + RMER6A LTR ERVK 1 183 -573 2 1299 768 20 20 0 chr3 93708057 93708157 -65891626 + B2_Mm1t SINE B2 2 103 -90 3 1299 4800 198 56 65 chr3 93708161 93709492 -65890291 - RMER3D-int LTR ERVK -160 2682 1365 3 1299 875 59 0 0 chr3 93709497 93709616 -65890167 - B1_Mus1 SINE Alu 0 148 30 3 1299 329 325 52 45 chr3 93709890 93710177 -65889606 - MuRRS-int LTR ERV1 -2474 2216 1928 3 1299 1172 184 22 0 chr3 93710513 93710736 -65889047 - RMER3D-int LTR ERVK -7557 1402 1175 3 1299 444 131 0 14 chr3 93710814 93710884 -65888899 + RLTR14-int LTR ERV1 197 265 -5052 2 1299 614 228 61 92 chr3 93711921 93712194 -65887589 + MT2A LTR ERVL 100 468 -133 3 1299 598 236 57 0 chr3 93712217 93712357 -65887426 - Lx LINE L1 -263 6391 6244 3 1299 4932 148 35 2 chr3 93712384 93713262 -65886521 - L1_Mur2 LINE L1 -1561 4316 3410 3 1299 444 187 15 6 chr3 93713240 93713351 -65886432 + MusHAL1 LINE L1 485 598 -5704 3 1299 219 250 16 0 chr3 93713453 93713517 -65886266 + GA-rich Low_complexity Low_complexity 2 66 0 3 1299 254 286 91 0 chr3 93715419 93715496 -65884287 + B1F SINE Alu 6 89 -60 3 1299 764 140 88 0 chr3 93715964 93716100 -65883683 + B1_Mur3 SINE Alu 1 148 -1 3 162 450 41 0 52 chr3 93716461 93716538 -65883245 - L1Md_F3 LINE L1 0 6584 6512 3 1300 415 252 40 0 chr3 93716568 93716667 -65883116 + PB1D10 SINE Alu 6 108 -9 3 1300 22 0 0 0 chr3 93717354 93717376 -65882407 + AT_rich Low_complexity Low_complexity 1 22 0 3 1300 9612 45 7 43 chr3 93717376 93717614 -65882169 + L1Md_F2 LINE L1 4675 4876 -1007 3 1300 3796 44 0 0 chr3 93717614 93718066 -65881717 - L1Md_T LINE L1 0 6582 6131 3 1300 9612 36 6 21 chr3 93718066 93719531 -65880252 + L1Md_F2 LINE L1 4877 6334 -248 3 1300 670 84 0 0 chr3 93719532 93719627 -65880156 - B1_Mm SINE Alu -52 95 1 3 1300 191 61 0 29 chr3 93719649 93719683 -65880100 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 3 1300 1167 57 0 0 chr3 93721184 93721325 -65878458 + B1_Mus2 SINE Alu 1 141 -6 3 1300 245 51 0 25 chr3 93721329 93721369 -65878414 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 3 1300 3431 68 19 82 chr3 93722258 93722772 -65877011 + RLTR45 LTR ERVK 1 482 0 3 1300 4378 77 107 17 chr3 93722772 93723407 -65876376 + RLTR45-int LTR ERVK 1 692 -6552 3 1300 1171 43 0 0 chr3 93723705 93723843 -65875940 + RLTR45-int LTR ERVK 681 818 -6426 3 1300 8000 40 65 7 chr3 93724605 93725941 -65873842 + RLTR45-int LTR ERVK 1322 2735 -4509 3 1300 39309 8 0 1 chr3 93725942 93731921 -65867862 + L1Md_A LINE L1 1 5586 -297 3 1300 9224 2 0 0 chr3 93731921 93732917 -65866866 + L1Md_A LINE L1 5587 6582 0 3 1300 352 314 10 0 chr3 93733459 93733561 -65866222 - B1_Mur4 SINE Alu -9 141 39 3 1300 643 207 75 63 chr3 93733580 93733833 -65865950 - RLTR5_Mm LTR ERV1 0 628 373 3 1300 1113 90 7 0 chr3 93734057 93734202 -65865581 - B1_Mm SINE Alu -1 146 1 3 1300 1814 124 88 0 chr3 93734666 93734993 -65864790 - BGLII_A LTR ERVK 0 445 90 3 1300 1460 175 106 137 chr3 93734993 93735712 -65864071 - RLTR13D6 LTR ERVK 0 893 196 3 1300 449 45 0 43 chr3 93735712 93735782 -65864001 - RLTR45-int LTR ERVK -1371 5873 5807 3 1300 12274 98 11 31 chr3 93735794 93737630 -65862153 + Lx4A LINE L1 3848 5646 -1412 3 1300 801 266 63 31 chr3 93737664 93737739 -65862044 - L1_Mur3 LINE L1 -5788 1282 1209 3 1300 197 33 33 0 chr3 93737739 93737769 -65862014 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 3 1300 1077 84 14 0 chr3 93737769 93737912 -65861871 - B1_Mm SINE Alu -1 146 2 3 1300 963 243 82 35 chr3 93737912 93738338 -65861445 - L1_Mur3 LINE L1 -6430 1282 837 3 1300 186 43 0 0 chr3 93738338 93738361 -65861422 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 3 1300 393 182 13 0 chr3 93738363 93738440 -65861343 - ORR1A4 LTR MaLR -23 371 294 3 1300 2924 57 3 3 chr3 93738443 93738831 -65860952 + MTA_Mm LTR MaLR 9 396 0 3 1300 395 226 28 28 chr3 93738831 93738938 -65860845 - ORR1A4 LTR MaLR -96 233 126 3 1300 322 218 13 13 chr3 93738923 93739002 -65860781 - ORR1A4-int LTR MaLR -620 889 811 3 1300 481 275 42 0 chr3 93738996 93739116 -65860667 - B1_Mus2 SINE Alu -20 127 3 3 1300 282 240 139 6 chr3 93739116 93739177 -65860606 - ORR1A4-int LTR MaLR -1233 730 646 3 1300 297 190 35 0 chr3 93739150 93739208 -65860575 - MT2B2 LTR ERVL -523 61 2 3 1300 774 320 74 100 chr3 93739208 93739380 -65860403 - L1_Mur3 LINE L1 -6861 851 659 3 1300 681 171 0 8 chr3 93739380 93739510 -65860273 + Lx LINE L1 6525 6653 -1 3 1300 807 319 69 52 chr3 93739510 93740415 -65859368 - L1_Mur3 LINE L1 -7054 658 34 3 1300 938 207 18 5 chr3 93740422 93740640 -65859143 + URR1A DNA MER1_type 5 225 -1 3 1300 418 246 60 92 chr3 93740969 93741153 -65858630 - B3 SINE B2 -1 194 17 3 1300 681 217 71 49 chr3 93742817 93743083 -65856700 + RMER17C LTR ERVK 139 410 0 3 1300 4283 240 96 112 chr3 93743083 93745583 -65854200 + RMER17C-int LTR ERVK 1 2460 -778 3 1300 1193 56 0 0 chr3 93745601 93745745 -65854038 - B1_Mus1 SINE Alu 0 148 5 3 1300 3339 140 87 155 chr3 93745745 93745913 -65853870 + RMER17C-int LTR ERVK 2358 2525 -713 3 1300 296 212 29 29 chr3 93745913 93745981 -65853802 - LSU-rRNA_Hsa rRNA rRNA -769 4266 4199 3 1300 3339 140 87 155 chr3 93745981 93746691 -65853092 + RMER17C-int LTR ERVK 2526 3238 0 3 1300 942 216 36 164 chr3 93746691 93747161 -65852622 + RMER17C LTR ERVK 1 410 0 3 1300 694 194 119 114 chr3 93747221 93747600 -65852183 - MT2B LTR ERVL 0 601 181 3 1300 265 337 42 88 chr3 93747938 93748130 -65851653 - MTEa LTR MaLR -162 217 35 3 1300 329 217 0 14 chr3 93748653 93748723 -65851060 - RLTR14-int LTR ERV1 -5052 265 197 3 1300 1510 217 52 32 chr3 93748725 93749163 -65850620 - RMER6A LTR ERVK 0 756 310 3 1300 514 263 75 18 chr3 93749164 93749393 -65850390 - Lx4B LINE L1 0 7058 6726 3 1300 302 311 10 10 chr3 93749372 93749476 -65850307 - RMER1B Other Other -369 697 594 3 1300 345 100 0 0 chr3 93749493 93749543 -65850240 + (TTA)n Simple_repeat Simple_repeat 3 52 0 3 1300 2482 207 62 4 chr3 93749545 93750079 -65849704 - L1_Mur3 LINE L1 -84 5796 5232 3 1300 5222 194 19 9 chr3 93750235 93751365 -65848418 + L1_Mur3 LINE L1 3992 5132 -748 3 1300 597 297 60 81 chr3 93751365 93751716 -65848067 + Lx5 LINE L1 6455 6902 -558 3 1300 624 14 0 0 chr3 93751716 93751789 -65847994 + (TG)n Simple_repeat Simple_repeat 2 74 0 3 1300 597 306 23 135 chr3 93751789 93751873 -65847910 + Lx5 LINE L1 6737 6803 -247 3 1300 1456 227 69 80 chr3 93751879 93752479 -65847304 + RLTR31_Mur LTR ERVK 18 553 0 3 1300 710 292 63 43 chr3 93752481 93752735 -65847048 + Lx6 LINE L1 7180 7438 -22 3 1300 1010 256 128 46 chr3 93752799 93753001 -65846782 + RLTR14-int LTR ERV1 1 200 -5117 3 1300 3283 194 53 20 chr3 93753001 93753733 -65846050 + RMER6A LTR ERVK 1 756 0 3 1300 1010 256 128 46 chr3 93753733 93753898 -65845885 + RLTR14-int LTR ERV1 201 398 -4919 3 1300 1306 189 56 10 chr3 93753898 93754186 -65845597 + ORR1B1 LTR MaLR 90 390 -4 3 1300 1711 175 161 5 chr3 93754277 93754657 -65845126 + BGLII_B LTR ERVK 3 441 0 3 1300 4484 166 71 39 chr3 93754886 93755853 -65843930 + RMER16-int LTR ERVK 119 1116 -4290 3 1300 789 46 28 0 chr3 93755853 93755962 -65843821 + B1_Mm SINE Alu 36 147 0 3 1300 1787 211 31 67 chr3 93756005 93756424 -65843359 + RMER16-int LTR ERVK 1111 1518 -3888 3 1300 8843 11 5 0 chr3 93756424 93757397 -65842386 - RLTR13A3 LTR ERVK 0 978 1 3 1300 1787 211 31 67 chr3 93757397 93757428 -65842355 + RMER16-int LTR ERVK 1519 1545 -3861 3 1300 891 106 8 0 chr3 93757431 93757563 -65842220 + B1_Mus1 SINE Alu 7 139 -9 3 1300 1318 106 21 0 chr3 93757587 93757776 -65842007 + B2_Mm2 SINE B2 1 193 -2 3 1300 1435 219 25 19 chr3 93757776 93758093 -65841690 + RMER16-int LTR ERVK 1544 1862 -3544 3 1300 1249 34 0 0 chr3 93758093 93758239 -65841544 + B1_Mm SINE Alu 1 146 -1 3 1300 3312 129 6 6 chr3 93758290 93758798 -65840985 + RMER16-int LTR ERVK 1848 2355 -3051 3 1300 1299 245 4 126 chr3 93758801 93759301 -65840482 - L1_Mur3 LINE L1 -6426 1286 848 3 1300 823 203 16 5 chr3 93759302 93759490 -65840293 - ORR1A4 LTR MaLR -2 327 138 3 1300 503 233 105 0 chr3 93759550 93759683 -65840100 - B1_Mur3 SINE Alu 0 149 3 3 1300 348 188 0 2 chr3 93759714 93759781 -65840002 - MT2B LTR ERVL -408 67 2 3 1300 1008 279 94 13 chr3 93759781 93760162 -65839621 - L1_Mur3 LINE L1 -6861 851 440 3 1300 216 0 0 0 chr3 93761678 93761702 -65838081 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 3 1300 630 165 174 0 chr3 93762186 93762301 -65837482 - B1_Mus2 SINE Alu -11 136 2 3 1300 839 215 48 24 chr3 93762759 93762969 -65836814 + URR1A DNA MER1_type 5 219 -7 3 1300 1120 140 32 0 chr3 93763068 93763254 -65836529 + B2_Mm1a SINE B2 2 193 0 3 1300 530 72 0 0 chr3 93765523 93765592 -65834191 - MusHAL1 LINE L1 -2989 365 297 3 1300 4476 163 31 23 chr3 93765585 93765631 -65834152 + L1_Mur2 LINE L1 3410 3454 -2423 3 1300 1520 62 0 20 chr3 93765631 93765828 -65833955 + B2_Mm1a SINE B2 1 193 0 3 1300 4476 163 31 23 chr3 93765828 93766681 -65833102 + L1_Mur2 LINE L1 3455 4316 -1561 3 1300 390 246 90 23 chr3 93766702 93766835 -65832948 + Lx LINE L1 6237 6378 -276 3 1300 608 218 31 110 chr3 93766836 93767143 -65832640 - MT2B LTR ERVL -77 507 181 3 1300 270 0 0 0 chr3 93767194 93767224 -65832559 + (A)n Simple_repeat Simple_repeat 1 30 0 3 1300 3638 106 6 4 chr3 93767224 93767755 -65832028 - L1_Mus2 LINE L1 -6 6560 6029 3 1300 7605 78 13 10 chr3 93767779 93768920 -65830863 - L1_Mus1 LINE L1 0 6567 5451 3 1300 1095 102 0 0 chr3 93768920 93769067 -65830716 - B1_Mus2 SINE Alu 0 147 1 3 1300 4680 123 3 64 chr3 93769067 93769387 -65830396 - L1_Mus1 LINE L1 -433 5450 5141 3 1300 3327 94 2 4 chr3 93769383 93769895 -65829888 - L1_Mus2 LINE L1 -524 6042 5536 3 1300 1325 258 36 7 chr3 93769874 93770365 -65829418 - L1_Mur3 LINE L1 -5787 1283 845 3 1300 884 154 28 6 chr3 93770370 93770546 -65829237 - ORR1B1 LTR MaLR -8 386 207 3 1300 318 266 0 11 chr3 93770565 93770625 -65829158 - ORR1B1-int LTR MaLR -1023 940 881 3 1300 534 244 57 0 chr3 93770625 93770748 -65829035 - B1_Mus2 SINE Alu -15 132 3 3 1300 318 266 0 11 chr3 93770748 93770782 -65829001 - ORR1B1-int LTR MaLR -1083 880 847 3 1300 371 171 0 2 chr3 93770779 93770846 -65828937 - MT2B LTR ERVL -408 67 2 3 1300 1099 278 80 16 chr3 93770846 93771233 -65828550 - L1_Mur3 LINE L1 -6861 851 440 3 1300 630 165 174 0 chr3 93773247 93773362 -65826421 - B1_Mus2 SINE Alu -11 136 2 3 1300 3929 169 56 22 chr3 93773649 93774495 -65825288 - RLTR13D6 LTR ERVK -28 874 1 3 1300 728 132 40 40 chr3 93774505 93774679 -65825104 + Lx LINE L1 6481 6654 0 3 1300 404 220 11 0 chr3 93774744 93774835 -65824948 - ORR1A2 LTR MaLR -235 92 1 3 1300 3174 58 5 0 chr3 93775668 93776062 -65823721 + MTA_Mm LTR MaLR 1 396 0 3 1300 245 51 0 25 chr3 93777926 93777966 -65821817 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 3 1300 1130 78 0 0 chr3 93777970 93778111 -65821672 - B1_Mus2 SINE Alu -6 141 1 3 1300 191 61 0 29 chr3 93779615 93779649 -65820134 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 3 1300 670 84 0 0 chr3 93779671 93779766 -65820017 + B1_Mm SINE Alu 1 95 -52 3 1300 10038 42 4 1 chr3 93779767 93781425 -65818358 - L1Md_F2 LINE L1 -248 6334 4675 3 1300 22 0 0 0 chr3 93781425 93781447 -65818336 + AT_rich Low_complexity Low_complexity 1 22 0 3 1300 231 279 35 103 chr3 93782118 93782134 -65817649 - MT2B2 LTR ERVL -308 276 170 3 1300 437 232 40 0 chr3 93782134 93782233 -65817550 - PB1D10 SINE Alu -9 108 6 3 1300 475 27 0 52 chr3 93782263 93782340 -65817443 + L1Md_F3 LINE L1 6512 6584 0 4 1300 747 147 88 0 chr3 93782701 93782837 -65816946 - B1_Mur3 SINE Alu -1 148 1 4 1300 254 286 91 0 chr3 93783305 93783382 -65816401 - B1F SINE Alu -60 89 6 4 1300 221 197 27 40 chr3 93785294 93785368 -65814415 + (TCTCTG)n Simple_repeat Simple_repeat 6 78 0 4 1300 353 241 5 5 chr3 93785451 93785547 -65814236 - MusHAL1 LINE L1 -5704 598 503 4 1300 5065 152 27 2 chr3 93785540 93786425 -65813358 + L1_Mur2 LINE L1 3410 4316 -1561 4 1300 521 252 63 0 chr3 93786453 93786580 -65813203 + Lx LINE L1 6245 6379 -275 4 1300 602 230 54 110 chr3 93786580 93786887 -65812896 - MT2B LTR ERVL -133 468 181 4 1300 429 145 0 14 chr3 93787925 93787995 -65811788 - RLTR14-int LTR ERV1 -5052 265 197 4 1300 1180 192 18 0 chr3 93788073 93788297 -65811486 + RMER3D-int LTR ERVK 1175 1402 -7557 4 1300 320 331 49 42 chr3 93788633 93788920 -65810863 + MuRRS-int LTR ERV1 1928 2216 -2474 4 1300 875 59 0 0 chr3 93789194 93789313 -65810470 + B1_Mus1 SINE Alu 30 148 0 4 1300 4841 200 55 60 chr3 93789318 93790625 -65809158 + RMER3D-int LTR ERVK 1365 2664 -178 4 1300 746 30 20 0 chr3 93790654 93790754 -65809029 - B2_Mm1t SINE B2 -90 103 2 4 1300 971 173 5 11 chr3 93790754 93790938 -65808845 - RMER6A LTR ERVK -573 183 1 4 1300 684 258 30 35 chr3 93790938 93791139 -65808644 - RLTR14-int LTR ERV1 -5117 200 1 4 1300 728 267 50 54 chr3 93791204 93791465 -65808318 - Lx6 LINE L1 -21 7439 7180 4 1300 2727 237 65 14 chr3 93791607 93792600 -65807183 - Lx6 LINE L1 -1224 6236 5179 4 1300 842 241 5 20 chr3 93792634 93792830 -65806953 - MTB_Mm LTR MaLR -7 400 208 4 1300 3515 114 39 40 chr3 93792830 93793398 -65806385 + RMER2 LTR ERV1 1 567 0 4 1300 842 265 15 533 chr3 93793398 93793449 -65806334 - MTB_Mm LTR MaLR -196 223 178 4 1300 259 142 333 27 chr3 93793899 93794007 -65805776 - B2_Mm2 SINE B2 -8 187 47 4 1300 1013 124 106 0 chr3 93794026 93794187 -65805596 - B2_Mm1t SINE B2 -14 179 2 4 1300 4549 10 0 0 chr3 93794494 93794987 -65804796 + MT2_Mm LTR ERVL 1 493 0 4 1300 41341 17 14 0 chr3 93794987 93800274 -65799509 + MERVL-int LTR ERVL 1 5360 -125 4 1300 344 179 46 35 chr3 93800274 93800361 -65799422 + ORR1A3-int LTR MaLR 553 640 -1323 4 1300 321 0 0 0 chr3 93800361 93800399 -65799384 + MERVL-int LTR ERVL 5448 5485 0 4 1300 4549 10 0 0 chr3 93800399 93800892 -65798891 + MT2_Mm LTR ERVL 1 493 0 4 1300 246 62 0 0 chr3 93800919 93800951 -65798832 + (TTTTC)n Simple_repeat Simple_repeat 2 33 0 4 1300 4546 12 0 0 chr3 93801879 93802372 -65797411 - MT2_Mm LTR ERVL 0 493 1 4 1300 278 288 115 10 chr3 93802887 93803081 -65796702 + RLTR4_MM-int LTR ERV1 4027 4227 -3374 4 1300 4139 66 4 4 chr3 93803283 93803800 -65795983 - MURVY-LTR LTR ERV1 -2 517 1 4 1300 921 329 30 45 chr3 93803981 93804243 -65795540 + MuRRS4-int LTR ERV1 3469 3729 -1334 4 1300 3282 226 124 25 chr3 93804243 93805115 -65794668 - RMER17B LTR ERVK 0 958 1 4 1300 921 321 26 39 chr3 93805115 93805403 -65794380 + MuRRS4-int LTR ERV1 3730 3953 -1110 4 1300 3605 96 65 9 chr3 93805818 93806353 -65793430 + RMER2 LTR ERV1 3 567 0 4 1300 837 194 114 0 chr3 93806353 93806554 -65793229 - MTC LTR MaLR -195 226 3 4 1300 251 234 13 13 chr3 93806659 93806737 -65793046 + T-rich Low_complexity Low_complexity 3 80 0 4 1300 4314 27 0 0 chr3 93807116 93807598 -65792185 - LTRIS_Mm LTR ERV1 0 482 1 4 1300 498 135 0 0 chr3 93807724 93807828 -65791955 + (TC)n Simple_repeat Simple_repeat 1 104 0 4 1300 25 51 0 0 chr3 93807978 93808017 -65791766 + AT_rich Low_complexity Low_complexity 1 39 0 4 1300 2995 152 29 13 chr3 93809142 93809695 -65790088 - RMER2 LTR ERV1 0 567 6 4 1300 297 68 0 0 chr3 93809715 93809759 -65790024 + (TTTG)n Simple_repeat Simple_repeat 1 44 0 4 1300 1038 89 0 0 chr3 93809759 93809894 -65789889 - B1_Mus1 SINE Alu -13 135 1 4 1300 702 286 9 0 chr3 93809894 93810114 -65789669 + RLTR14 LTR ERV1 146 367 -15 4 1300 3584 170 41 23 chr3 93810169 93810878 -65788905 - MYSERV6-int LTR ERVK -7063 1896 1175 4 1300 429 145 0 14 chr3 93810956 93811026 -65788757 + RLTR14-int LTR ERV1 197 265 -5052 4 1300 633 233 50 78 chr3 93812066 93812339 -65787444 + MT2A LTR ERVL 100 468 -133 4 1300 547 252 58 0 chr3 93812362 93812501 -65787282 - Lx LINE L1 -263 6391 6245 4 1300 4561 155 64 5 chr3 93812529 93813385 -65786398 - L1_Mur2 LINE L1 -1561 4316 3410 4 1300 452 176 0 0 chr3 93813378 93813452 -65786331 + MusHAL1 LINE L1 297 370 -2984 4 1300 267 286 0 0 chr3 93813557 93813634 -65786149 + GA-rich Low_complexity Low_complexity 2 78 0 4 1300 309 344 30 0 chr3 93815386 93815517 -65784266 + B3A SINE B2 17 151 -47 4 1300 891 212 42 23 chr3 93815899 93816116 -65783667 - URR1A DNA MER1_type 0 226 6 4 1300 594 183 174 0 chr3 93816579 93816694 -65783089 + B1_Mus2 SINE Alu 2 136 -11 4 1300 1137 278 77 16 chr3 93818639 93819027 -65780756 + L1_Mur3 LINE L1 456 867 -6861 4 1300 335 200 0 0 chr3 93819027 93819087 -65780696 + MT2B LTR ERVL 2 61 -540 4 1300 471 237 203 4 chr3 93819060 93819125 -65780658 + ORR1B1-int LTR MaLR 646 790 -1173 4 1300 483 250 60 0 chr3 93819125 93819241 -65780542 + B1_Mus2 SINE Alu 3 125 -22 4 1300 471 237 203 4 chr3 93819241 93819306 -65780477 + ORR1B1-int LTR MaLR 791 940 -1023 4 1300 916 159 23 0 chr3 93819325 93819501 -65780282 + ORR1B1 LTR MaLR 207 386 -8 4 1300 1333 244 6 95 chr3 93819506 93819991 -65779792 + L1_Mur3 LINE L1 861 1302 -6426 4 1300 479 269 29 0 chr3 93819996 93820171 -65779612 + L1_Mur3 LINE L1 3141 3320 -2560 4 1300 7179 84 4 21 chr3 93820191 93821356 -65778427 - L1_Mus2 LINE L1 0 6566 5422 4 1300 4889 110 4 1 chr3 93821362 93822088 -65777695 + L1Md_T LINE L1 4121 4848 -1035 4 1300 809 43 0 0 chr3 93822085 93822178 -65777605 + L1Md_T LINE L1 5494 5586 -297 4 1300 8077 57 0 0 chr3 93822178 93823162 -65776621 + L1Md_T LINE L1 5587 6570 -12 4 1300 2149 201 45 19 chr3 93823188 93823809 -65775974 + MMETn-int LTR ERVK 3724 4085 -3321 4 1300 243 0 0 0 chr3 93823809 93823836 -65775947 + (TAAA)n Simple_repeat Simple_repeat 3 29 0 4 1300 6097 91 3 5 chr3 93823836 93824898 -65774885 + MMETn-int LTR ERVK 2379 3402 -2004 4 1300 9122 142 30 31 chr3 93824963 93826647 -65773136 + MMETn-int LTR ERVK 3219 5307 -860 4 1300 1539 168 21 73 chr3 93826674 93827014 -65772769 + RLTRETN_Mm LTR ERVK 1 322 0 4 1300 405 135 45 55 chr3 93827014 93827114 -65772669 + L1Md_T LINE L1 6483 6581 -1 4 1300 5433 82 33 1 chr3 93827114 93827990 -65771793 + L1_Mus1 LINE L1 5100 6002 -565 4 1300 2526 100 8 16 chr3 93827992 93828367 -65771416 + L1_Mus1 LINE L1 6195 6566 -1 4 1300 3505 33 0 0 chr3 93828411 93828807 -65770976 - MTA_Mm LTR MaLR 0 396 1 4 1300 259 254 0 0 chr3 93828893 93828956 -65770827 - MuRRS4-int LTR ERV1 -3488 1829 1767 4 1300 378 269 54 66 chr3 93829739 93830029 -65769754 - MuRRS4-int LTR ERV1 -5999 1779 1247 4 1300 27 0 0 0 chr3 93830029 93830056 -65769727 + AT_rich Low_complexity Low_complexity 1 27 0 4 1300 1800 64 3 121 chr3 93830062 93830384 -65769399 - RLTR10B LTR ERVK 0 292 9 4 1300 4628 98 13 11 chr3 93830406 93831401 -65768382 - MMERVK10C-int LTR ERVK 0 7680 6651 4 1300 7292 63 3 7 chr3 93831392 93832300 -65767483 - MMERVK10C-int LTR ERVK -1771 5810 4906 4 1300 975 17 0 0 chr3 93832300 93832417 -65767366 + L1_Mm LINE L1 3643 3759 -2124 4 1300 439 169 0 0 chr3 93832417 93832506 -65767277 - L1_Mm LINE L1 -3850 2033 1945 4 1300 38848 56 1 32 chr3 93832505 93839078 -65760705 - L1Md_A LINE L1 -75 6507 150 4 1300 580 184 64 0 chr3 93839247 93839388 -65760395 - Lx6 LINE L1 -2 7458 7309 4 1300 2775 100 42 24 chr3 93839419 93839871 -65759912 + RMER16 LTR ERVK 74 533 0 4 1300 370 348 52 0 chr3 93839922 93840057 -65759726 - RMER1C Other Other -1173 169 28 4 1300 509 250 35 0 chr3 93840231 93840347 -65759436 - RMER1B Other Other -353 713 594 4 1300 1121 211 84 0 chr3 93840369 93840425 -65759358 - L1_Mur3 LINE L1 -90 5790 5717 4 1300 396 0 0 0 chr3 93840425 93840469 -65759314 + (TG)n Simple_repeat Simple_repeat 1 44 0 4 1300 1121 211 84 0 chr3 93840469 93840649 -65759134 - L1_Mur3 LINE L1 -164 5716 5535 4 1300 501 209 171 7 chr3 93841008 93841148 -65758635 - L1_Mur3 LINE L1 -366 5514 5352 4 1300 2450 206 93 46 chr3 93841142 93841651 -65758132 - L1_Mur3 LINE L1 -1477 4403 3855 4 1300 1088 116 0 0 chr3 93841651 93841797 -65757986 - B1_Mus2 SINE Alu 0 147 2 4 1300 2450 206 93 46 chr3 93841797 93841835 -65757948 - L1_Mur3 LINE L1 -2026 3854 3821 4 1300 1408 46 0 39 chr3 93841835 93841856 -65757927 - B2_Mm1a SINE B2 -18 175 161 4 1300 207 0 0 0 chr3 93841856 93841879 -65757904 + (TTTA)n Simple_repeat Simple_repeat 3 25 0 4 1300 1408 46 0 39 chr3 93841879 93842038 -65757745 - B2_Mm1a SINE B2 -33 160 2 4 1300 2450 206 93 46 chr3 93842038 93842249 -65757534 - L1_Mur3 LINE L1 -2060 3820 3608 4 1300 1851 202 57 22 chr3 93842823 93843228 -65756555 - MTC LTR MaLR 0 421 3 4 1300 1130 49 14 0 chr3 93843329 93843471 -65756312 + B1_Mus2 SINE Alu 1 144 -3 4 1300 219 36 0 0 chr3 93843471 93843499 -65756284 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 4 1300 1142 88 0 0 chr3 93843523 93843671 -65756112 + B1_Mus1 SINE Alu 1 148 0 4 1300 239 213 40 0 chr3 93843696 93843771 -65756012 + (TTTG)n Simple_repeat Simple_repeat 1 78 0 4 1300 1676 50 0 0 chr3 93843800 93843998 -65755785 - L1Md_F2 LINE L1 -310 5573 5376 4 1300 8151 52 4 0 chr3 93844008 93844998 -65754785 + L1Md_F2 LINE L1 5587 6580 -2 4 1300 352 314 10 0 chr3 93845494 93845596 -65754187 - B1_Mur4 SINE Alu -9 141 39 4 1300 672 202 75 63 chr3 93845615 93845868 -65753915 - RLTR5_Mm LTR ERV1 0 628 373 4 1300 1113 90 7 0 chr3 93846092 93846237 -65753546 - B1_Mm SINE Alu -1 146 1 4 1300 1805 124 88 0 chr3 93846701 93847028 -65752755 - BGLII_A LTR ERVK 0 445 90 4 162 1449 173 106 137 chr3 93847028 93847747 -65752036 - RLTR13D6 LTR ERVK 0 893 196 4 1301 449 45 0 43 chr3 93847747 93847817 -65751966 - RLTR45-int LTR ERVK -1371 5873 5807 4 1301 12409 102 2 33 chr3 93847829 93849686 -65750097 + Lx4A LINE L1 3848 5646 -1412 4 1301 805 269 63 31 chr3 93849720 93849795 -65749988 - L1_Mur3 LINE L1 -5788 1298 1225 4 1301 197 33 33 0 chr3 93849795 93849825 -65749958 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 4 1301 1077 84 14 0 chr3 93849825 93849968 -65749815 - B1_Mm SINE Alu -1 146 2 4 1301 971 243 82 35 chr3 93849968 93850394 -65749389 - L1_Mur3 LINE L1 -6430 1298 853 4 1301 186 43 0 0 chr3 93850394 93850417 -65749366 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 4 1301 393 182 13 0 chr3 93850419 93850496 -65749287 - ORR1B1 LTR MaLR -23 371 294 4 1301 1253 43 0 0 chr3 93850499 93850660 -65749123 + MTA_Mm LTR MaLR 9 169 -227 4 1301 728 131 0 8 chr3 93850730 93850853 -65748930 + Lx LINE L1 6525 6646 -8 4 1301 853 323 60 24 chr3 93850914 93851763 -65748020 - L1_Mur3 LINE L1 -7052 676 50 4 1301 882 213 18 5 chr3 93851771 93851988 -65747795 + URR1A DNA MER1_type 6 225 -1 4 1301 438 251 60 92 chr3 93852317 93852501 -65747282 - B3 SINE B2 -1 194 17 4 1301 681 217 71 49 chr3 93854165 93854431 -65745352 + RMER17C LTR ERVK 139 410 0 4 1301 4267 241 95 112 chr3 93854431 93856933 -65742850 + RMER17C-int LTR ERVK 1 2460 -778 4 1301 1168 56 0 7 chr3 93856942 93857087 -65742696 - B1_Mus1 SINE Alu 0 148 5 4 1301 3362 142 83 152 chr3 93857087 93857255 -65742528 + RMER17C-int LTR ERVK 2358 2525 -713 4 1301 296 212 29 29 chr3 93857255 93857323 -65742460 - LSU-rRNA_Hsa rRNA rRNA -769 4266 4199 4 1301 3362 142 83 152 chr3 93857323 93858033 -65741750 + RMER17C-int LTR ERVK 2526 3238 0 4 1301 942 216 36 164 chr3 93858033 93858503 -65741280 + RMER17C LTR ERVK 1 410 0 4 1301 686 192 119 114 chr3 93858563 93858942 -65740841 - MT2B LTR ERVL 0 601 181 4 1301 265 337 42 88 chr3 93859280 93859472 -65740311 - MTEa LTR MaLR -162 217 35 4 1301 329 217 0 14 chr3 93859997 93860067 -65739716 - RLTR14-int LTR ERV1 -5052 265 197 5 1301 1397 220 65 32 chr3 93860069 93860502 -65739281 - RMER6A LTR ERVK 0 756 310 5 1301 557 272 179 5 chr3 93860503 93860710 -65739073 - Lx2B LINE L1 -3 6997 6755 5 1301 329 301 10 10 chr3 93860713 93860817 -65738966 - RMER1B Other Other -369 697 594 5 1301 441 95 0 0 chr3 93860834 93860897 -65738886 + (TTA)n Simple_repeat Simple_repeat 2 64 0 5 1301 2454 206 63 2 chr3 93860897 93861418 -65738365 - L1_Mur3 LINE L1 -96 5784 5232 5 1301 5138 193 20 10 chr3 93861578 93862703 -65737080 + L1_Mur3 LINE L1 3996 5132 -748 5 1301 594 291 60 84 chr3 93862703 93863054 -65736729 + Lx5 LINE L1 6455 6902 -558 5 1301 588 14 0 0 chr3 93863054 93863123 -65736660 + (TG)n Simple_repeat Simple_repeat 2 70 0 5 1301 594 301 22 142 chr3 93863123 93863221 -65736562 + Lx5 LINE L1 6737 6812 -238 5 1301 1462 219 60 84 chr3 93863239 93863813 -65735970 + RLTR31_Mur LTR ERVK 41 553 0 5 1301 709 305 51 28 chr3 93863815 93864068 -65735715 + Lx6 LINE L1 7180 7438 -22 5 1301 1010 256 128 46 chr3 93864132 93864334 -65735449 + RLTR14-int LTR ERV1 1 200 -5117 5 1301 3270 192 53 23 chr3 93864334 93865068 -65734715 + RMER6A LTR ERVK 1 756 0 5 1301 1010 256 128 46 chr3 93865068 93865233 -65734550 + RLTR14-int LTR ERV1 201 398 -4919 5 1301 1306 189 56 10 chr3 93865233 93865521 -65734262 + ORR1B1 LTR MaLR 90 390 -4 5 1301 1706 177 161 5 chr3 93865612 93865992 -65733791 + BGLII_B LTR ERVK 3 441 0 5 1301 4454 167 71 39 chr3 93866221 93867188 -65732595 + RMER16-int LTR ERVK 119 1116 -4290 5 1301 797 37 28 0 chr3 93867188 93867297 -65732486 + B1_Mm SINE Alu 36 147 0 5 1301 1805 205 35 71 chr3 93867338 93867757 -65732026 + RMER16-int LTR ERVK 1111 1518 -3888 5 1301 8783 12 5 0 chr3 93867757 93868730 -65731053 - RLTR13A3 LTR ERVK 0 978 1 5 1301 1805 205 35 71 chr3 93868730 93868761 -65731022 + RMER16-int LTR ERVK 1519 1545 -3861 5 1301 891 106 8 0 chr3 93868764 93868896 -65730887 + B1_Mus1 SINE Alu 7 139 -9 5 1301 1318 106 21 0 chr3 93868920 93869109 -65730674 + B2_Mm2 SINE B2 1 193 -2 5 1301 1423 223 29 19 chr3 93869109 93869425 -65730358 + RMER16-int LTR ERVK 1544 1862 -3544 5 1301 1249 34 0 0 chr3 93869425 93869571 -65730212 + B1_Mm SINE Alu 1 146 -1 5 1301 3321 129 6 6 chr3 93869622 93870130 -65729653 + RMER16-int LTR ERVK 1848 2355 -3051 5 1301 1305 245 4 122 chr3 93870133 93870631 -65729152 - L1_Mur3 LINE L1 -6426 1286 848 5 1301 823 203 16 5 chr3 93870632 93870820 -65728963 - ORR1A4 LTR MaLR -2 327 138 5 1301 503 233 105 0 chr3 93870880 93871013 -65728770 - B1_Mur3 SINE Alu 0 149 3 5 1301 348 188 0 2 chr3 93871044 93871111 -65728672 - MT2B LTR ERVL -408 67 2 5 1301 1023 277 94 13 chr3 93871111 93871492 -65728291 - L1_Mur3 LINE L1 -6861 851 440 5 1301 216 0 0 0 chr3 93873008 93873032 -65726751 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 5 1301 608 174 174 0 chr3 93873517 93873632 -65726151 - B1_Mus2 SINE Alu -11 136 2 5 1301 848 205 48 24 chr3 93874088 93874298 -65725485 + URR1A DNA MER1_type 5 219 -7 5 1301 1107 145 32 0 chr3 93874397 93874583 -65725200 + B2_Mm1a SINE B2 2 193 0 5 1301 530 72 0 0 chr3 93876853 93876922 -65722861 - MusHAL1 LINE L1 -2989 365 297 5 1301 4405 164 31 28 chr3 93876915 93876961 -65722822 + L1_Mur2 LINE L1 3410 3454 -2423 5 1301 1520 62 0 20 chr3 93876961 93877158 -65722625 + B2_Mm1a SINE B2 1 193 0 5 1301 4405 164 31 28 chr3 93877158 93878015 -65721768 + L1_Mur2 LINE L1 3455 4316 -1561 5 1301 390 246 90 23 chr3 93878036 93878169 -65721614 + Lx LINE L1 6237 6378 -276 5 1301 631 212 31 110 chr3 93878170 93878477 -65721306 - MT2B LTR ERVL -77 507 181 5 1301 3624 108 6 4 chr3 93878543 93879074 -65720709 - L1_Mus2 LINE L1 -6 6560 6029 5 1301 7643 76 12 10 chr3 93879097 93880239 -65719544 - L1_Mus1 LINE L1 0 6567 5451 5 1301 1091 102 0 0 chr3 93880239 93880386 -65719397 - B1_Mus2 SINE Alu 0 147 1 5 1301 4797 119 8 63 chr3 93880386 93880721 -65719062 - L1_Mus1 LINE L1 -433 5450 5122 5 1301 3393 86 2 4 chr3 93880703 93881215 -65718568 - L1_Mus2 LINE L1 -524 6042 5536 5 1301 1333 260 15 3 chr3 93881194 93881681 -65718102 - L1_Mur3 LINE L1 -5787 1283 849 5 1301 507 148 21 18 chr3 93881681 93881789 -65717994 - ORR1B1 LTR MaLR 0 419 289 5 1301 650 312 17 9 chr3 93881794 93882027 -65717756 - L1_Mur3 LINE L1 -7038 674 440 5 1301 603 158 59 0 chr3 93884034 93884135 -65715648 - B1_Mus2 SINE Alu -39 108 2 5 1301 3926 168 56 23 chr3 93884427 93885268 -65714515 - RLTR13D6 LTR ERVK -33 869 1 5 1301 728 132 40 40 chr3 93885278 93885452 -65714331 + Lx LINE L1 6481 6654 0 5 1301 404 220 11 0 chr3 93885526 93885617 -65714166 - ORR1A2 LTR MaLR -235 92 1 5 1301 3242 51 5 0 chr3 93886450 93886844 -65712939 + MTA_Mm LTR MaLR 1 396 0 5 1301 209 57 0 28 chr3 93888702 93888738 -65711045 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 5 1301 1191 78 0 0 chr3 93888742 93888883 -65710900 - B1_Mus2 SINE Alu -6 141 1 5 1301 191 61 0 29 chr3 93890387 93890421 -65709362 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 5 1301 679 105 0 0 chr3 93890443 93890538 -65709245 + B1_Mm SINE Alu 1 95 -52 5 1301 10018 41 4 1 chr3 93890539 93892197 -65707586 - L1Md_F2 LINE L1 -248 6334 4675 5 1301 22 0 0 0 chr3 93892197 93892219 -65707564 + AT_rich Low_complexity Low_complexity 1 22 0 5 1301 264 302 47 94 chr3 93892891 93892906 -65706877 - MT2B2 LTR ERVL -309 275 219 5 1301 476 232 40 0 chr3 93892906 93893005 -65706778 - PB1D10 SINE Alu -9 108 6 5 1301 264 302 47 94 chr3 93893005 93893019 -65706764 - MT2B2 LTR ERVL -309 218 154 5 1301 508 0 26 66 chr3 93893034 93893110 -65706673 + L1Md_F3 LINE L1 6512 6584 0 5 1301 822 140 88 0 chr3 93893473 93893609 -65706174 - B1_Mur3 SINE Alu -1 148 1 5 1301 251 315 87 1 chr3 93894067 93894154 -65705629 - B1F SINE Alu -21 96 6 5 1301 221 197 27 40 chr3 93896066 93896140 -65703643 + (TCTCTG)n Simple_repeat Simple_repeat 6 78 0 5 1301 353 241 5 5 chr3 93896223 93896319 -65703464 - MusHAL1 LINE L1 -5704 598 503 5 1301 5107 151 27 2 chr3 93896312 93897197 -65702586 + L1_Mur2 LINE L1 3410 4316 -1561 5 1301 516 252 63 0 chr3 93897225 93897352 -65702431 + Lx LINE L1 6245 6379 -275 5 1301 663 271 171 67 chr3 93897352 93897680 -65702103 - MT2B LTR ERVL -77 524 163 5 1301 232 305 54 141 chr3 93898063 93898212 -65701571 - MTEa LTR MaLR -224 155 20 5 1301 445 131 0 14 chr3 93898698 93898768 -65701015 - RLTR14-int LTR ERV1 -5052 265 197 5 1301 229 278 14 14 chr3 93898770 93898843 -65700940 - RMER6A LTR ERVK 0 756 684 5 1301 1146 197 22 0 chr3 93898846 93899069 -65700714 + RMER3D-int LTR ERVK 1175 1402 -7557 5 1301 350 324 48 48 chr3 93899400 93899689 -65700094 + MuRRS-int LTR ERV1 1928 2216 -2474 5 1301 287 191 87 14 chr3 93899955 93900024 -65699759 + 4.5SRNA scRNA scRNA 13 86 -8 5 1301 925 59 0 0 chr3 93899963 93900082 -65699701 + B1_Mus1 SINE Alu 30 148 0 5 1301 3386 233 63 67 chr3 93900087 93901410 -65698373 + RMER3D-int LTR ERVK 1365 2682 -160 5 1301 812 20 20 0 chr3 93901414 93901514 -65698269 - B2_Mm1t SINE B2 -90 103 2 5 1301 1021 173 5 11 chr3 93901514 93901698 -65698085 - RMER6A LTR ERVK -573 183 1 5 1301 665 268 30 35 chr3 93901698 93901899 -65697884 - RLTR14-int LTR ERV1 -5117 200 1 5 1301 801 271 60 38 chr3 93901960 93902225 -65697558 - Lx6 LINE L1 -10 7450 7180 5 1301 2796 242 64 10 chr3 93902367 93903357 -65696426 - Lx6 LINE L1 -1224 6236 5178 5 1301 910 236 5 25 chr3 93903390 93903586 -65696197 - MTB_Mm LTR MaLR -7 400 208 5 1301 3841 108 39 29 chr3 93903586 93904146 -65695637 + RMER2 LTR ERV1 1 566 -1 5 1301 910 243 11 498 chr3 93904146 93904198 -65695585 - MTB_Mm LTR MaLR -199 222 178 5 1301 249 151 333 27 chr3 93904648 93904756 -65695027 - B2_Mm2 SINE B2 -8 187 47 5 1301 1054 130 106 0 chr3 93904775 93904936 -65694847 - B2_Mm1t SINE B2 -14 179 2 5 1301 253 341 155 6 chr3 93906748 93906916 -65692867 + RLTR4_MM-int LTR ERV1 4040 4232 -3369 5 1301 4344 61 18 0 chr3 93907115 93907623 -65692160 - MURVY-LTR LTR ERV1 -2 517 1 5 1301 916 331 34 64 chr3 93907801 93908070 -65691713 + MuRRS4-int LTR ERV1 3470 3729 -1334 5 1301 3590 224 123 24 chr3 93908070 93908942 -65690841 - RMER17B LTR ERVK 0 958 1 5 1301 916 332 31 57 chr3 93908942 93909230 -65690553 + MuRRS4-int LTR ERV1 3730 3953 -1110 5 1301 3778 102 65 9 chr3 93909638 93910175 -65689608 + RMER2 LTR ERV1 1 567 0 5 1301 886 200 120 0 chr3 93910175 93910375 -65689408 - MTC LTR MaLR -195 226 3 5 1301 225 132 0 0 chr3 93910522 93910560 -65689223 + (T)n Simple_repeat Simple_repeat 1 38 0 5 1301 4402 33 2 0 chr3 93910938 93911419 -65688364 - LTRIS_Mm LTR ERV1 0 482 1 5 1301 654 105 0 0 chr3 93911547 93911661 -65688122 + (TC)n Simple_repeat Simple_repeat 1 114 0 5 1301 23 0 0 0 chr3 93911798 93911821 -65687962 + AT_rich Low_complexity Low_complexity 1 23 0 5 1301 3642 73 38 11 chr3 93912635 93913104 -65686679 + RLTR45 LTR ERVK 1 482 0 5 1301 4486 66 107 16 chr3 93913104 93913738 -65686045 + RLTR45-int LTR ERVK 1 692 -6552 5 1301 11933 47 41 6 chr3 93914313 93916133 -65683650 + RLTR45-int LTR ERVK 1329 3212 -4032 5 1301 4075 78 29 38 chr3 93916103 93916715 -65683068 + RLTR45-int LTR ERVK 3380 3986 -3258 5 1301 8239 43 17 5 chr3 93916708 93917704 -65682079 + RLTR45-int LTR ERVK 5065 6072 -1172 5 1301 2006 101 10 7 chr3 93917726 93918025 -65681758 + RLTR13B1 LTR ERVK 207 506 -387 5 1301 7687 43 16 3 chr3 93918026 93918928 -65680855 + RLTR45-int LTR ERVK 6332 7244 0 5 1301 298 345 49 49 chr3 93919023 93919145 -65680638 + RLTR14-int LTR ERV1 212 333 -4984 5 1301 3212 149 35 11 chr3 93919245 93919794 -65679989 - RMER2 LTR ERV1 0 567 6 5 1301 1146 108 0 0 chr3 93919831 93919979 -65679804 - B1_Mus1 SINE Alu 0 148 1 5 1301 822 277 9 0 chr3 93919979 93920199 -65679584 + RLTR14 LTR ERV1 146 367 -15 5 1301 3567 179 32 24 chr3 93920254 93920970 -65678813 - MYSERV6-int LTR ERVK -7063 1896 1175 5 1301 406 159 0 14 chr3 93921048 93921118 -65678665 + RLTR14-int LTR ERV1 197 265 -5052 5 1301 676 248 33 72 chr3 93922117 93922383 -65677400 + MT2B LTR ERVL 181 468 -133 5 1301 505 255 58 7 chr3 93922402 93922540 -65677243 - Lx LINE L1 -265 6389 6245 5 1301 4623 156 58 5 chr3 93922568 93923429 -65676354 - L1_Mur2 LINE L1 -1561 4316 3410 5 1301 424 176 0 0 chr3 93923422 93923496 -65676287 + MusHAL1 LINE L1 297 370 -2984 5 1301 222 260 26 13 chr3 93923602 93923680 -65676103 + (CAGAGA)n Simple_repeat Simple_repeat 6 84 0 5 1301 340 254 45 147 chr3 93925428 93925626 -65674157 + B3A SINE B2 10 187 -8 5 1301 896 226 42 23 chr3 93925946 93926163 -65673620 - URR1A DNA MER1_type 0 226 6 5 1301 635 183 58 0 chr3 93926629 93926733 -65673050 + B1_Mus2 SINE Alu 2 111 -36 5 1301 210 37 0 0 chr3 93928571 93928598 -65671185 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 6 1301 1088 278 80 16 chr3 93928704 93929091 -65670692 + L1_Mur3 LINE L1 456 867 -6861 6 1301 377 188 0 2 chr3 93929091 93929158 -65670625 + MT2B LTR ERVL 2 67 -408 6 1301 299 298 0 11 chr3 93929155 93929189 -65670594 + ORR1B1-int LTR MaLR 847 880 -1083 6 1301 569 231 91 0 chr3 93929189 93929310 -65670473 + B1_Mur3 SINE Alu 3 134 -15 6 1301 299 298 0 11 chr3 93929310 93929370 -65670413 + ORR1B1-int LTR MaLR 881 940 -1023 6 1301 920 182 23 0 chr3 93929389 93929565 -65670218 + ORR1B1 LTR MaLR 207 386 -8 6 1301 1354 240 60 8 chr3 93929570 93930060 -65669723 + L1_Mur3 LINE L1 861 1299 -5787 6 1301 452 237 65 6 chr3 93930068 93930238 -65669545 + L1_Mur3 LINE L1 3141 3320 -2560 6 1301 7084 88 6 21 chr3 93930257 93931421 -65668362 - L1_Mus2 LINE L1 0 6566 5422 6 1301 6830 109 2 4 chr3 93931427 93932416 -65667367 + L1_Mm LINE L1 4121 5107 -776 6 1301 3263 76 0 5 chr3 93932416 93932840 -65666943 + L1_Mus1 LINE L1 6064 6485 -82 6 1301 1438 194 12 57 chr3 93932845 93933178 -65666605 + RLTRETN_Mm LTR ERVK 5 322 0 6 1301 8424 116 5 50 chr3 93933179 93934545 -65665238 + MMETn-int LTR ERVK 2 1306 -3538 6 1301 3883 98 6 78 chr3 93934559 93935214 -65664569 + MMETn-int LTR ERVK 1580 2187 -2657 6 1301 2178 204 45 19 chr3 93935445 93936066 -65663717 + MMETn-int LTR ERVK 3724 4085 -3321 6 1301 222 37 0 0 chr3 93936066 93936093 -65663690 + (TAAA)n Simple_repeat Simple_repeat 3 29 0 6 1301 6337 82 4 5 chr3 93936093 93937153 -65662630 + MMETn-int LTR ERVK 2379 3402 -2004 6 1301 9272 147 20 33 chr3 93937217 93938922 -65660861 + MMETn-int LTR ERVK 3219 5307 -860 6 1301 383 149 44 53 chr3 93938934 93938947 -65660836 + L1Md_A LINE L1 6470 6482 -100 6 1301 1675 159 21 73 chr3 93938947 93939287 -65660496 + RLTRETN_Mm LTR ERVK 1 322 0 6 1301 383 149 44 53 chr3 93939287 93939386 -65660397 + L1Md_A LINE L1 6483 6580 -2 6 1301 5429 81 33 1 chr3 93939386 93940262 -65659521 + L1_Mus1 LINE L1 5100 6002 -565 6 1301 2766 87 8 16 chr3 93940264 93940640 -65659143 + L1_Mus1 LINE L1 6195 6567 0 6 1301 3606 40 0 0 chr3 93940686 93941082 -65658701 - MTA_Mm LTR MaLR 0 396 1 6 1301 9661 36 5 2 chr3 93941082 93942177 -65657606 - MTA_Mm-int LTR MaLR 0 1098 1 6 1301 3606 38 0 0 chr3 93942177 93942573 -65657210 - MTA_Mm LTR MaLR 0 396 1 6 1301 257 254 0 0 chr3 93942659 93942722 -65657061 - MuRRS4-int LTR ERV1 -3488 1829 1767 6 1301 402 268 52 64 chr3 93943504 93943793 -65655990 - MuRRS4-int LTR ERV1 -5999 1779 1247 6 1301 27 0 0 0 chr3 93943793 93943820 -65655963 + AT_rich Low_complexity Low_complexity 1 27 0 6 1301 1800 64 3 121 chr3 93943826 93944148 -65655635 - RLTR10B2 LTR ERVK 0 292 9 6 1301 4660 99 13 7 chr3 93944170 93945161 -65654622 - MMERVK10C-int LTR ERVK 0 7680 6651 6 1301 40091 65 2 2 chr3 93945152 93950094 -65649689 - MMERVK10C-int LTR ERVK -1771 5810 870 6 1301 844 133 0 0 chr3 93950092 93950220 -65649563 - MMERVK10C-int LTR ERVK -7182 399 272 6 1301 38654 44 5 3 chr3 93950220 93956419 -65643364 - L1Md_T LINE L1 0 6585 279 6 1301 2155 71 11 7 chr3 93956420 93956704 -65643079 - MMERVK10C-int LTR ERVK -7296 285 1 6 1301 1935 101 30 67 chr3 93956708 93957081 -65642702 - RLTR10B2 LTR ERVK -6 359 1 6 1301 3544 98 2 12 chr3 93957081 93957579 -65642204 - L1Md_F2 LINE L1 -23 6559 6067 6 1301 2034 49 0 0 chr3 93957562 93957809 -65641974 + L1Md_F2 LINE L1 5825 6071 -511 6 1301 323 292 41 53 chr3 93957829 93957999 -65641784 - MuRRS4-int LTR ERV1 -3823 1240 1073 6 1301 378 46 30 15 chr3 93958946 93959012 -65640771 + (CAAAA)n Simple_repeat Simple_repeat 5 71 0 6 1301 446 325 36 25 chr3 93959098 93959294 -65640489 - RLTR23 LTR ERV1 -2 428 231 6 1301 4854 165 26 49 chr3 93959527 93960545 -65639238 + MYSERV6-int LTR ERVK 894 1888 -7071 6 1301 499 177 42 42 chr3 93960545 93960663 -65639120 + B2_Mm1a SINE B2 71 188 -5 6 1301 371 256 37 137 chr3 93960906 93961096 -65638687 - B3A SINE B2 -8 187 17 6 1301 520 72 0 0 chr3 93962930 93962999 -65636784 - MusHAL1 LINE L1 -2989 365 297 6 1301 4150 158 79 11 chr3 93962992 93963841 -65635942 + L1_Mur2 LINE L1 3410 4316 -1561 6 1301 438 230 58 109 chr3 93963838 93963994 -65635789 + L1_Mus4 LINE L1 6231 6378 -258 6 1301 669 233 72 86 chr3 93963995 93964372 -65635411 - MT2B LTR ERVL -77 524 68 6 1301 3583 116 4 4 chr3 93964441 93964976 -65634807 - L1_Mus2 LINE L1 -9 6557 6023 6 1301 7703 77 13 12 chr3 93964991 93966130 -65633653 - L1_Mus1 LINE L1 0 6567 5451 6 1301 1054 116 0 0 chr3 93966130 93966277 -65633506 - B1_Mus2 SINE Alu 0 147 1 6 1301 4564 121 18 78 chr3 93966277 93966305 -65633478 - L1_Mus1 LINE L1 -433 5450 5447 6 1301 315 0 0 0 chr3 93966305 93966340 -65633443 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 6 1301 1176 56 0 0 chr3 93966340 93966484 -65633299 - B1_Mus2 SINE Alu -3 144 1 6 1301 4564 121 18 78 chr3 93966484 93966797 -65632986 - L1_Mus1 LINE L1 -437 5446 5123 6 1301 3373 90 2 2 chr3 93966779 93967290 -65632493 - L1_Mus2 LINE L1 -524 6042 5536 6 1301 1339 259 14 5 chr3 93967269 93967759 -65632024 - L1_Mur3 LINE L1 -5787 1283 847 6 1301 838 193 23 6 chr3 93967766 93967943 -65631840 - ORR1B1 LTR MaLR -8 386 207 6 1301 432 246 109 56 chr3 93967949 93968070 -65631713 - ORR1B1-int LTR MaLR -1000 963 757 6 1301 564 237 42 0 chr3 93968070 93968188 -65631595 - B1_Mus2 SINE Alu -22 125 3 6 1301 432 246 109 56 chr3 93968188 93968251 -65631532 - ORR1B1-int LTR MaLR -1000 756 646 6 1301 343 183 0 0 chr3 93968224 93968284 -65631499 - MT2B LTR ERVL -523 61 2 6 1301 990 281 92 13 chr3 93968284 93968666 -65631117 - L1_Mur3 LINE L1 -6861 851 440 6 1301 618 174 174 0 chr3 93970660 93970775 -65629008 - B1_Mus2 SINE Alu -11 136 2 6 1301 3895 168 61 11 chr3 93971053 93971895 -65627888 - RLTR13D6 LTR ERVK -12 917 1 6 1301 715 149 35 35 chr3 93971905 93972079 -65627704 + Lx LINE L1 6481 6654 0 6 1301 398 209 11 0 chr3 93972153 93972244 -65627539 - ORR1A2 LTR MaLR -235 92 1 6 1301 3277 46 5 0 chr3 93973080 93973474 -65626309 + MTA_Mm LTR MaLR 1 396 0 6 1301 7187 61 3 0 chr3 93975900 93976801 -65622982 - L1_Mm LINE L1 -305 5578 4675 6 1301 424 232 40 0 chr3 93977501 93977600 -65622183 - PB1D10 SINE Alu -9 108 6 6 1301 458 14 40 67 chr3 93977630 93977705 -65622078 + L1Md_F3 LINE L1 6512 6584 0 6 1301 764 140 88 0 chr3 93978069 93978205 -65621578 - B1_Mur3 SINE Alu -1 148 1 6 1302 224 312 91 0 chr3 93978673 93978750 -65621033 - B1F SINE Alu -60 89 6 6 1302 219 250 16 0 chr3 93980655 93980719 -65619064 + CT-rich Low_complexity Low_complexity 2 66 0 6 1302 422 214 12 6 chr3 93980821 93980933 -65618850 - MusHAL1 LINE L1 -5704 598 485 6 1302 4894 151 35 2 chr3 93980911 93981789 -65617994 + L1_Mur2 LINE L1 3410 4316 -1561 6 1302 575 243 57 0 chr3 93981816 93981956 -65617827 + Lx LINE L1 6244 6391 -263 6 1302 616 226 35 109 chr3 93981979 93982252 -65617531 - MT2A LTR ERVL -133 468 100 6 1302 429 145 0 14 chr3 93983291 93983361 -65616422 - RLTR14-int LTR ERV1 -5052 265 197 6 1302 1182 192 18 0 chr3 93983439 93983663 -65616120 + RMER3D-int LTR ERVK 1175 1402 -7557 6 1302 364 324 49 42 chr3 93984000 93984287 -65615496 + MuRRS-int LTR ERV1 1928 2216 -2474 6 1302 875 59 0 0 chr3 93984561 93984680 -65615103 + B1_Mus1 SINE Alu 30 148 0 6 1302 4924 200 53 63 chr3 93984685 93986016 -65613767 + RMER3D-int LTR ERVK 1365 2682 -160 6 1302 768 20 20 0 chr3 93986020 93986120 -65613663 - B2_Mm1t SINE B2 -90 103 2 6 1302 984 168 5 11 chr3 93986120 93986304 -65613479 - RMER6A LTR ERVK -573 183 1 6 1302 650 268 30 35 chr3 93986304 93986505 -65613278 - RLTR14-int LTR ERV1 -5117 200 1 6 1302 773 254 40 44 chr3 93986602 93986829 -65612954 - Lx6 LINE L1 -55 7405 7180 6 1302 2733 236 67 14 chr3 93986971 93987963 -65611820 - Lx6 LINE L1 -1224 6236 5179 6 1302 823 246 5 20 chr3 93987997 93988193 -65611590 - MTB_Mm LTR MaLR -7 400 208 6 1302 3516 114 39 40 chr3 93988193 93988761 -65611022 + RMER2 LTR ERV1 1 567 0 6 1302 823 255 18 537 chr3 93988761 93988812 -65610971 - MTB_Mm LTR MaLR -196 223 178 6 1302 259 142 333 27 chr3 93989262 93989370 -65610413 - B2_Mm2 SINE B2 -8 187 47 6 1302 1040 112 106 0 chr3 93989389 93989550 -65610233 - B2_Mm1t SINE B2 -14 179 2 6 1302 278 288 115 10 chr3 93991335 93991529 -65608254 + RLTR4_MM-int LTR ERV1 4027 4227 -3374 6 1302 4139 66 4 4 chr3 93991731 93992248 -65607535 - MURVY-LTR LTR ERV1 -2 517 1 6 1302 954 327 30 45 chr3 93992429 93992691 -65607092 + MuRRS4-int LTR ERV1 3469 3729 -1334 6 1302 3243 228 124 26 chr3 93992691 93993564 -65606219 - RMER17B LTR ERVK 0 958 1 6 1302 954 319 26 39 chr3 93993564 93993852 -65605931 + MuRRS4-int LTR ERV1 3730 3953 -1110 6 1302 3614 98 65 9 chr3 93994265 93994802 -65604981 + RMER2 LTR ERV1 1 567 0 6 1302 812 200 120 0 chr3 93994802 93995002 -65604781 - MTC LTR MaLR -195 226 3 6 1302 252 213 13 13 chr3 93995103 93995179 -65604604 + T-rich Low_complexity Low_complexity 5 80 0 6 1302 4306 25 0 0 chr3 93995558 93996040 -65603743 - LTRIS_Mm LTR ERV1 0 482 1 6 1302 420 136 0 0 chr3 93996166 93996254 -65603529 + (TC)n Simple_repeat Simple_repeat 1 88 0 6 1302 25 51 0 0 chr3 93996404 93996443 -65603340 + AT_rich Low_complexity Low_complexity 1 39 0 6 1302 3051 145 29 13 chr3 93997568 93998121 -65601662 - RMER2 LTR ERV1 0 567 6 6 1302 1129 88 0 0 chr3 93998176 93998324 -65601459 - B1_Mus1 SINE Alu 0 148 1 6 1302 702 286 9 0 chr3 93998324 93998544 -65601239 + RLTR14 LTR ERV1 146 367 -15 6 1302 3563 172 41 24 chr3 93998599 93999309 -65600474 - MYSERV6-int LTR ERVK -7063 1896 1175 6 1302 429 145 0 14 chr3 93999387 93999457 -65600326 + RLTR14-int LTR ERV1 197 265 -5052 6 1302 686 231 102 78 chr3 94000497 94000770 -65599013 + MT2A LTR ERVL 100 468 -133 1 1302 541 252 58 0 chr3 94000793 94000932 -65598851 - Lx LINE L1 -263 6391 6245 2 1302 4619 155 63 5 chr3 94000960 94001817 -65597966 - L1_Mur2 LINE L1 -1561 4316 3410 3 1302 452 176 0 0 chr3 94001810 94001884 -65597899 + MusHAL1 LINE L1 297 370 -2984 4 1302 260 211 39 13 chr3 94001989 94002066 -65597717 + (CAGAGA)n Simple_repeat Simple_repeat 6 84 0 5 1302 353 344 30 0 chr3 94003819 94003950 -65595833 + B3A SINE B2 17 151 -47 6 1302 959 208 42 23 chr3 94004332 94004549 -65595234 - URR1A DNA MER1_type 0 226 6 7 1302 641 183 174 0 chr3 94005011 94005126 -65594657 + B1_Mus2 SINE Alu 2 136 -11 8 1302 342 0 0 0 chr3 94006956 94006994 -65592789 + (TTTG)n Simple_repeat Simple_repeat 3 40 0 9 1302 542 271 280 12 chr3 94007102 94007427 -65592356 + L1_Mur3 LINE L1 456 867 -6861 1 1302 381 240 338 56 chr3 94007427 94007643 -65592140 + MT2B2 LTR ERVL 2 278 -306 1 1302 562 236 228 0 chr3 94007460 94007719 -65592064 + ORR1B1-int LTR MaLR 646 963 -1000 1 1302 943 171 23 0 chr3 94007725 94007901 -65591882 + ORR1B1 LTR MaLR 207 386 -8 1 1302 1287 247 8 114 chr3 94007906 94008395 -65591388 + L1_Mur3 LINE L1 861 1297 -6431 1 1302 493 269 29 0 chr3 94008405 94008580 -65591203 + L1_Mur3 LINE L1 3141 3320 -2560 1 1302 7133 87 4 21 chr3 94008600 94009765 -65590018 - L1_Mus2 LINE L1 0 6566 5422 1 1302 4986 110 3 1 chr3 94009771 94010498 -65589285 + L1Md_T LINE L1 4121 4848 -1035 1 1302 803 43 0 0 chr3 94010495 94010588 -65589195 + L1Md_T LINE L1 5494 5586 -297 1 1302 8484 57 0 0 chr3 94010588 94011572 -65588211 + L1Md_T LINE L1 5587 6570 -12 1 1302 2103 202 54 19 chr3 94011597 94012214 -65587569 + MMETn-int LTR ERVK 3724 4085 -3321 1 1302 279 0 0 0 chr3 94012214 94012245 -65587538 + (TAAA)n Simple_repeat Simple_repeat 3 33 0 1 1302 6234 88 3 5 chr3 94012245 94013307 -65586476 + MMETn-int LTR ERVK 2379 3402 -2004 1 1302 9361 145 21 30 chr3 94013372 94015083 -65584700 + MMETn-int LTR ERVK 3219 5307 -860 1 1302 1639 168 21 73 chr3 94015094 94015434 -65584349 + RLTRETN_Mm LTR ERVK 1 322 0 1 1302 463 115 45 55 chr3 94015434 94015534 -65584249 + L1Md_T LINE L1 6483 6581 -1 1 1302 5450 81 33 1 chr3 94015534 94016407 -65583376 + L1_Mus1 LINE L1 5103 6002 -565 1 1302 2642 103 8 16 chr3 94016409 94016785 -65582998 + L1_Mus1 LINE L1 6195 6567 0 1 1302 3605 40 0 0 chr3 94016829 94017225 -65582558 - MTA_Mm LTR MaLR 0 396 1 1 1302 257 254 0 0 chr3 94017311 94017374 -65582409 - RLTR14-int LTR ERV1 -3488 1829 1767 2 1302 379 305 66 69 chr3 94018156 94018445 -65581338 - RLTR14-int LTR ERV1 -5999 1779 1492 2 1302 27 0 0 0 chr3 94018445 94018472 -65581311 + AT_rich Low_complexity Low_complexity 1 27 0 2 1302 2139 69 3 118 chr3 94018478 94018808 -65580975 - RLTR10B LTR ERVK 0 292 1 2 1302 449 54 0 0 chr3 94018808 94018864 -65580919 - MMERVK10C-int LTR ERVK 0 7581 7526 2 1302 35585 64 2 1 chr3 94018861 94023221 -65576562 - MMERVK10C-int LTR ERVK -2347 5234 870 2 1302 3046 78 8 5 chr3 94023219 94023617 -65576166 - MMERVK10C-int LTR ERVK -7182 399 1 2 1302 1921 74 0 121 chr3 94023617 94023940 -65575843 - RLTR10B LTR ERVK 0 292 9 2 1302 3787 81 0 8 chr3 94023961 94024459 -65575324 - L1Md_F2 LINE L1 -22 6560 6067 2 1302 1936 53 25 4 chr3 94024442 94024687 -65575096 + L1Md_F2 LINE L1 5825 6074 -508 2 1302 308 256 26 0 chr3 94024704 94024782 -65575001 - RLTR14-int LTR ERV1 -3823 1240 1161 2 1302 255 79 0 0 chr3 94025817 94025855 -65573928 + (CAAAC)n Simple_repeat Simple_repeat 2 39 0 2 1302 439 328 37 80 chr3 94025963 94026288 -65573495 - RLTR23 LTR ERV1 -2 428 118 2 1302 6496 167 28 36 chr3 94026382 94027683 -65572100 + MYSERV6-int LTR ERVK 894 2184 -6775 2 1302 573 15 0 0 chr3 94027843 94027909 -65571874 + (GA)n Simple_repeat Simple_repeat 2 67 0 2 1302 537 359 25 36 chr3 94027934 94028290 -65571493 - RLTR14-int LTR ERV1 -4955 362 11 2 1302 1206 264 15 9 chr3 94028316 94028648 -65571135 - RLTR14 LTR ERV1 -18 364 31 2 1302 406 293 8 17 chr3 94028648 94028766 -65571017 - RLTR14-int LTR ERV1 -4989 328 212 2 1302 888 251 13 26 chr3 94028946 94029175 -65570608 + L1_Mur3 LINE L1 1764 1989 -3891 2 1302 2916 61 3 3 chr3 94029175 94029519 -65570264 - IAPLTR4 LTR ERVK 0 345 2 2 1302 14676 219 22 13 chr3 94029520 94034155 -65565628 - IAPLTR3-int LTR ERVK -351 7329 2920 2 1302 366 294 43 45 chr3 94034155 94034467 -65565316 - IAPLTR3-int LTR ERVK -5376 2841 2324 2 1302 733 94 17 17 chr3 94034808 94034927 -65564856 - RLTR45-int LTR ERVK -6213 1031 913 3 1302 885 55 360 0 chr3 94035050 94035211 -65564572 - RLTR45-int LTR ERVK -6334 910 692 3 1302 1128 49 0 40 chr3 94035565 94035715 -65564068 - RLTR45-int LTR ERVK -6552 692 549 3 1302 3572 120 32 11 chr3 94036503 94037036 -65562747 - RLTR45-int LTR ERVK -6700 544 1 3 1302 2790 134 40 37 chr3 94037036 94037517 -65562266 - RLTR45 LTR ERVK 0 482 1 3 1302 493 258 54 6 chr3 94037517 94037685 -65562098 - L1_Mur3 LINE L1 -1862 4018 3843 3 1302 567 43 0 0 chr3 94037708 94037778 -65562005 + (TC)n Simple_repeat Simple_repeat 1 70 0 3 1302 516 273 91 25 chr3 94037779 94037978 -65561805 + Lx6 LINE L1 7223 7434 -26 3 1302 398 181 165 31 chr3 94038120 94038217 -65561566 - L1_Mur3 LINE L1 -6944 784 675 3 1302 724 147 8 8 chr3 94038221 94038351 -65561432 + Lx LINE L1 6525 6654 0 3 1302 25 51 0 0 chr3 94038383 94038422 -65561361 + AT_rich Low_complexity Low_complexity 1 39 0 3 1302 1010 121 0 12 chr3 94038422 94038589 -65561194 + (GAAA)n Simple_repeat Simple_repeat 4 168 0 3 1302 794 337 50 25 chr3 94038589 94039414 -65560369 - L1_Mur3 LINE L1 -7071 657 50 3 1302 1022 228 4 13 chr3 94039414 94039641 -65560142 + URR1A DNA MER1_type 1 225 -1 3 1302 510 236 46 30 chr3 94040021 94040152 -65559631 - B3 SINE B2 -67 149 17 3 1302 364 82 0 32 chr3 94040545 94040608 -65559175 + (TTG)n Simple_repeat Simple_repeat 1 61 0 3 1302 543 31 0 0 chr3 94041846 94041911 -65557872 + (TC)n Simple_repeat Simple_repeat 2 66 0 4 1302 566 223 81 54 chr3 94041911 94042096 -65557687 + RMER17C LTR ERVK 191 380 -30 4 1302 1543 242 74 100 chr3 94042115 94042763 -65557020 + RMER17C-int LTR ERVK 2 632 -2606 4 1302 358 93 36 18 chr3 94042850 94042905 -65556878 + RMER17C-int LTR ERVK 1627 1682 -1556 4 1302 692 196 58 88 chr3 94043433 94043749 -65556034 + RMER17C-int LTR ERVK 1100 1366 -1872 4 1302 4018 95 65 2 chr3 94043762 94044351 -65555432 - L1_Mm LINE L1 -1053 4830 4205 4 1302 6211 93 22 45 chr3 94044351 94044887 -65554896 + L1_Mus2 LINE L1 5646 6180 -386 4 1302 1230 62 7 0 chr3 94044887 94045031 -65554752 - B1_Mm SINE Alu 0 147 3 4 1302 6211 93 22 45 chr3 94045031 94045230 -65554553 + L1_Mus2 LINE L1 6181 6365 -201 4 1302 2772 41 28 0 chr3 94045230 94045548 -65554235 + IAPLTR2b LTR ERVK 1 327 0 4 1302 6211 93 22 45 chr3 94045548 94045753 -65554030 + L1_Mus2 LINE L1 6366 6566 0 4 1302 781 294 44 100 chr3 94045765 94045876 -65553907 - L1_Mur3 LINE L1 -6956 756 635 4 1302 1191 75 0 7 chr3 94045876 94046024 -65553759 + B1_Mus1 SINE Alu 2 148 0 4 1302 781 294 44 100 chr3 94046024 94046362 -65553421 - L1_Mur3 LINE L1 -7078 634 332 4 1302 1225 81 11 89 chr3 94047393 94047584 -65552199 - B2_Mm1t SINE B2 -17 176 1 4 1302 213 65 0 0 chr3 94047610 94047641 -65552142 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 5 1302 334 331 37 124 chr3 94047925 94048142 -65551641 - MTEa LTR MaLR -162 217 20 5 1302 1533 226 75 30 chr3 94048715 94049143 -65550640 - RMER6A LTR ERVK 0 756 310 5 1302 556 268 50 30 chr3 94049146 94049346 -65550437 - Lx4B LINE L1 0 7058 6760 5 1302 334 260 0 0 chr3 94049353 94049426 -65550357 - RMER1B Other Other -369 697 625 5 1302 3650 203 43 48 chr3 94049483 94049941 -65549842 - L1_Mur3 LINE L1 -94 5786 5299 5 1302 3342 58 2 5 chr3 94049941 94050338 -65549445 + MTA_Mm LTR MaLR 1 396 0 5 1302 3650 203 43 48 chr3 94050338 94050430 -65549353 - L1_Mur3 LINE L1 -582 5298 5232 5 1302 297 51 0 0 chr3 94050430 94050469 -65549314 + (TG)n Simple_repeat Simple_repeat 2 40 0 5 1302 3650 203 43 48 chr3 94050469 94050816 -65548967 - L1_Mur3 LINE L1 -649 5231 4892 5 1302 343 182 88 33 chr3 94050849 94050940 -65548843 - L1_Mur3 LINE L1 -1372 4508 4413 5 1302 3615 170 28 6 chr3 94050940 94051587 -65548196 + MYSERV6-int LTR ERVK 847 1507 -7452 5 1302 407 312 0 6 chr3 94051587 94051745 -65548038 + L1_Mur3 LINE L1 897 1053 -6659 5 1302 3679 36 0 5 chr3 94051745 94052190 -65547593 - RLTR13B1 LTR ERVK 0 893 451 6 1302 2926 49 0 3 chr3 94052182 94052552 -65547231 - RLTR13B3 LTR ERVK -308 621 253 6 1302 31835 54 37 42 chr3 94052553 94054110 -65545673 + RLTR45-int LTR ERVK 1335 2913 -4331 6 1302 274 73 0 68 chr3 94054110 94054140 -65545643 - L1Md_A LINE L1 -246 6336 6307 6 1302 2019 42 4 4 chr3 94054140 94054378 -65545405 + L1Md_T LINE L1 6344 6581 -1 6 1302 274 73 0 68 chr3 94054378 94054391 -65545392 - L1Md_A LINE L1 -276 6306 6296 6 1302 31835 54 37 42 chr3 94054391 94056236 -65543547 + RLTR45-int LTR ERVK 2914 4745 -2499 6 1302 225 0 0 0 chr3 94056236 94056261 -65543522 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 6 1302 31835 27 18 26 chr3 94056261 94058721 -65541062 + RLTR45-int LTR ERVK 4746 7240 -4 6 1302 3867 42 23 2 chr3 94058725 94059197 -65540586 + RLTR45 LTR ERVK 1 482 0 6 1302 388 213 0 0 chr3 94059197 94059272 -65540511 - ORR1C1 LTR MaLR -194 184 110 6 1302 247 171 13 13 chr3 94059543 94059620 -65540163 + GA-rich Low_complexity Low_complexity 2 78 0 6 1302 901 247 22 51 chr3 94059712 94059783 -65540000 - RLTR14-int LTR ERV1 -5052 265 201 6 1302 3449 178 48 14 chr3 94059783 94060514 -65539269 - RMER6A LTR ERVK 0 756 1 7 1302 901 247 22 51 chr3 94060514 94060715 -65539068 - RLTR14-int LTR ERV1 -5117 200 1 6 1302 686 279 34 42 chr3 94060781 94061043 -65538740 - Lx6 LINE L1 -21 7439 7180 7 1302 1538 250 89 18 chr3 94061185 94061500 -65538283 - Lx6 LINE L1 -1224 6236 5905 7 1302 6906 51 18 22 chr3 94061500 94062406 -65537377 + L1Md_F2 LINE L1 5669 6570 -12 7 1302 2634 208 60 2 chr3 94062406 94063078 -65536705 - Lx6 LINE L1 -1556 5904 5192 7 1302 956 240 0 5 chr3 94063123 94063317 -65536466 - MTB_Mm LTR MaLR -7 400 208 7 1302 3540 112 39 27 chr3 94063317 94063877 -65535906 + RMER2 LTR ERV1 1 567 0 7 1302 956 256 4 507 chr3 94063877 94063928 -65535855 - MTB_Mm LTR MaLR -198 223 178 7 1302 328 112 330 27 chr3 94064354 94064463 -65535320 - B2_Mm2 SINE B2 -7 188 47 7 1302 846 142 148 0 chr3 94064494 94064649 -65535134 - B2_Mm1t SINE B2 -14 179 2 7 1302 1217 167 41 89 chr3 94066313 94066628 -65533155 - MYSERV6-int LTR ERVK -7485 1474 1175 7 1302 351 174 0 14 chr3 94066706 94066776 -65533007 + RLTR14-int LTR ERV1 197 265 -5052 7 1302 687 255 129 31 chr3 94067798 94068092 -65531691 + MT2A LTR ERVL 100 468 -133 7 1302 479 259 58 0 chr3 94068115 94068254 -65531529 - Lx LINE L1 -263 6391 6245 8 1302 4302 157 52 6 chr3 94068282 94069149 -65530634 - Lx6 LINE L1 -1561 4316 3410 7 1302 398 178 0 0 chr3 94069142 94069215 -65530568 + MusHAL1 LINE L1 297 369 -2985 8 1302 248 247 26 0 chr3 94069324 94069401 -65530382 + GA-rich Low_complexity Low_complexity 2 80 0 8 1302 392 256 36 150 chr3 94071163 94071356 -65528427 + B3A SINE B2 17 187 -8 8 1302 935 222 44 0 chr3 94071680 94071883 -65527900 - URR1A DNA MER1_type -11 215 4 8 1302 33797 35 0 0 chr3 94072306 94077979 -65521804 + L1Md_T LINE L1 1 5589 -297 8 1302 9056 4 0 0 chr3 94077979 94078975 -65520808 + L1Md_T LINE L1 5590 6585 0 8 1302 248 265 59 22 chr3 94079007 94079043 -65520740 + ORR1A3-int LTR MaLR 614 654 -855 8 1302 647 164 58 0 chr3 94079043 94079147 -65520636 + B1_Mus2 SINE Alu 2 111 -36 8 1302 209 192 77 0 chr3 94079656 94079708 -65520075 - L2 LINE L2 -557 2862 2807 8 1302 198 0 0 0 chr3 94081069 94081091 -65518692 + (TTTTG)n Simple_repeat Simple_repeat 4 25 0 8 1302 749 283 43 22 chr3 94081164 94081442 -65518341 + L1_Mur3 LINE L1 440 723 -6989 9 1302 1198 41 0 14 chr3 94081517 94081664 -65518119 + B1_Mus2 SINE Alu 3 147 0 9 1302 291 186 0 119 chr3 94081699 94081766 -65518017 + MT2B2 LTR ERVL 3 61 -523 9 1302 321 309 0 10 chr3 94081768 94081804 -65517979 + ORR1A3-int LTR MaLR 845 880 -1083 8 1302 574 219 73 0 chr3 94081804 94081927 -65517856 + B1_Mur3 SINE Alu 3 134 -15 9 1302 321 309 0 10 chr3 94081927 94081988 -65517795 + ORR1A3-int LTR MaLR 881 941 -1022 8 1302 950 171 23 0 chr3 94081983 94082159 -65517624 + ORR1B1 LTR MaLR 207 386 -8 9 1302 1242 256 19 6 chr3 94082164 94082644 -65517139 + L1_Mur3 LINE L1 861 1288 -5798 9 1302 510 240 29 0 chr3 94082663 94082838 -65516945 + L1_Mur3 LINE L1 3141 3320 -2560 9 1302 19199 106 5 83 chr3 94082857 94086203 -65513580 - L1_Mus2 LINE L1 0 6566 3418 9 1302 822 78 0 17 chr3 94086203 94086321 -65513462 - B1_Mus1 SINE Alu 0 148 33 9 1302 19199 106 5 83 chr3 94086321 94087342 -65512441 - L1_Mus2 LINE L1 0 3417 2456 9 1302 36131 43 0 3 chr3 94087372 94093721 -65506062 - L1Md_T LINE L1 0 6585 160 9 1302 5457 87 7 8 chr3 94093721 94094566 -65505217 - L1_Mus2 LINE L1 -3415 2468 1625 9 1302 274 305 26 0 chr3 94094562 94094713 -65505070 + L1_Mur3 LINE L1 3317 3471 -2409 9 1302 1013 231 26 64 chr3 94094960 94095302 -65504481 + RodERV21-int LTR ERV1 294 622 -4369 9 1302 476 178 83 9 chr3 94095302 94095410 -65504373 + MTD LTR MaLR 302 417 -2 1 1302 1491 206 44 39 chr3 94095410 94095849 -65503934 + Lx5 LINE L1 5285 5729 -1321 1 1302 310 204 169 5 chr3 94095942 94096018 -65503765 - MT2B LTR ERVL -390 85 1 1 1302 209 128 0 25 chr3 94096049 94096089 -65503694 + (TTA)n Simple_repeat Simple_repeat 1 39 0 1 1302 280 167 77 0 chr3 94096138 94096216 -65503567 - L1_Mur3 LINE L1 -1608 4272 4189 1 1302 5725 88 20 29 chr3 94096297 94097980 -65501803 + L1VL2 LINE L1 162 1826 -1789 1 1302 1475 48 0 11 chr3 94098095 94098284 -65501499 + B2_Mm1t SINE B2 7 193 0 1 1302 1096 102 7 0 chr3 94099048 94099195 -65500588 + B1_Mus1 SINE Alu 1 148 0 1 1302 25 0 0 0 chr3 94099195 94099220 -65500563 + AT_rich Low_complexity Low_complexity 1 25 0 1 1302 21 36 0 0 chr3 94099296 94099324 -65500459 + AT_rich Low_complexity Low_complexity 1 28 0 1 1302 275 247 52 0 chr3 94099324 94099421 -65500362 - L1_Mur3 LINE L1 -1705 4175 4074 1 1302 1297 86 11 0 chr3 94099442 94099617 -65500166 + B2_Mm1t SINE B2 3 179 -14 1 1302 1460 225 61 98 chr3 94099739 94100027 -65499756 - L1_Mur3 LINE L1 -1812 4068 3799 1 1302 194 91 0 29 chr3 94100027 94100061 -65499722 + (TA)n Simple_repeat Simple_repeat 2 34 0 1 1302 1460 225 61 98 chr3 94100061 94100424 -65499359 - L1_Mur3 LINE L1 -2082 3798 3441 1 1302 2394 209 8 118 chr3 94100420 94100974 -65498809 - L1_Mur3 LINE L1 -3354 2526 2054 1 1302 561 15 0 0 chr3 94100974 94101040 -65498743 + (TG)n Simple_repeat Simple_repeat 2 67 0 1 1302 2394 209 8 118 chr3 94101040 94101312 -65498471 - L1_Mur3 LINE L1 -3827 2053 1791 1 1302 1412 55 38 5 chr3 94101313 94101497 -65498286 - B2_Mm2 SINE B2 -5 190 1 1 1302 1188 41 7 0 chr3 94101539 94101684 -65498099 + B1_Mus2 SINE Alu 2 147 0 1 1302 180 0 0 0 chr3 94101684 94101704 -65498079 + (A)n Simple_repeat Simple_repeat 1 20 0 1 1302 477 299 157 22 chr3 94101748 94102022 -65497761 + RLTR14-int LTR ERV1 18 328 -4989 1 1302 1154 251 94 0 chr3 94102022 94102341 -65497442 + RLTR14 LTR ERV1 31 379 -3 1 1302 687 325 21 40 chr3 94102341 94102716 -65497067 + RLTR14-int LTR ERV1 1 368 -4949 1 1302 489 17 0 0 chr3 94102725 94102783 -65497000 + (TG)n Simple_repeat Simple_repeat 2 59 0 1 1302 470 190 0 87 chr3 94102790 94102917 -65496866 + RLTR14-int LTR ERV1 431 546 -4771 1 1302 652 221 7 0 chr3 94102958 94103107 -65496676 - MYSERV6-int LTR ERVK -6776 2183 2034 1 1302 937 87 0 0 chr3 94103140 94103267 -65496516 - B1_Mus1 SINE Alu -21 127 1 1 1302 227 242 23 38 chr3 94103267 94103293 -65496490 - ORR1B1-int LTR MaLR -863 646 623 1 1302 8946 143 26 7 chr3 94103293 94104881 -65494902 - MYSERV6-int LTR ERVK -6941 2018 401 1 1302 1178 137 174 0 chr3 94104893 94105134 -65494649 - MYSERV6-int LTR ERVK -8639 320 38 1 1302 21 0 0 0 chr3 94105383 94105404 -65494379 + AT_rich Low_complexity Low_complexity 1 21 0 1 1302 272 302 75 0 chr3 94105565 94105671 -65494112 - L4 LINE RTE -1753 276 163 1 1302 340 301 55 67 chr3 94105852 94106016 -65493767 + MTEb LTR MaLR 54 215 -164 1 1302 445 217 49 5 chr3 94106094 94106200 -65493583 + B1_Mus2 SINE Alu 39 147 -2 1 1302 238 270 54 33 chr3 94106222 94106314 -65493469 - L1M2 LINE L1 -3420 2723 2630 1 1302 274 158 81 116 chr3 94106330 94106502 -65493281 - Lx9 LINE L1 -1 7643 7478 1 1302 34 0 0 0 chr3 94106543 94106577 -65493206 + AT_rich Low_complexity Low_complexity 1 34 0 1 1302 997 292 98 15 chr3 94106587 94107138 -65492645 - Lx9 LINE L1 -1069 6575 5850 1 1302 1032 147 12 0 chr3 94107143 94107299 -65492484 + ORR1C2 LTR MaLR 1 158 -226 1 1302 1250 72 16 6 chr3 94107299 94107456 -65492327 + B2_Mm2 SINE B2 2 158 -37 1 1302 180 0 0 0 chr3 94107456 94107476 -65492307 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 1 1302 1250 72 16 6 chr3 94107476 94107500 -65492283 + B2_Mm2 SINE B2 159 185 -10 1 1302 937 196 70 39 chr3 94107492 94107512 -65492271 + ORR1C2 LTR MaLR 147 166 -218 1 1302 2370 55 55 6 chr3 94107512 94107824 -65491959 - ORR1A2 LTR MaLR 0 327 1 1 1302 937 196 70 39 chr3 94107824 94108032 -65491751 + ORR1C2 LTR MaLR 167 381 -3 1 1302 1294 211 23 54 chr3 94108039 94108390 -65491393 - Lx9 LINE L1 -40 5807 5468 1 1302 505 290 7 55 chr3 94108416 94108562 -65491221 - B1_Mur1 SINE Alu -5 144 6 1 1302 306 370 47 8 chr3 94108449 94108577 -65491206 - B4 SINE B4 -84 208 76 1 1302 2229 147 8 55 chr3 94108732 94109129 -65490654 + ORR1C1 LTR MaLR 1 378 0 1 1302 184 292 0 0 chr3 94109231 94109279 -65490504 + MIRb SINE MIR 125 172 -96 1 1303 462 36 0 0 chr3 94109930 94109986 -65489797 + (TG)n Simple_repeat Simple_repeat 1 56 0 1 1303 620 290 29 0 chr3 94109996 94110134 -65489649 - RSINE1 SINE B4 -22 143 2 1 1303 481 328 0 8 chr3 94110318 94110435 -65489348 + ID_B1 SINE B4 96 211 -13 1 1303 1107 246 128 28 chr3 94111278 94111701 -65488082 - L1MA8 LINE L1 -6 6285 5821 1 1303 526 242 15 95 chr3 94111742 94111879 -65487904 - RSINE1 SINE B4 -5 160 35 1 1303 381 228 13 0 chr3 94112003 94112082 -65487701 - ID_B1 SINE B4 -15 209 130 1 1303 1137 83 7 0 chr3 94112665 94112810 -65486973 + B1_Mus2 SINE Alu 2 147 0 1 1303 683 197 81 40 chr3 94112924 94113072 -65486711 - B3 SINE B2 -5 211 58 1 1303 201 200 0 20 chr3 94113115 94113166 -65486617 + T-rich Low_complexity Low_complexity 5 54 0 1 1303 324 239 140 11 chr3 94113169 94113262 -65486521 - PB1D9 SINE Alu -7 113 9 1 1303 223 213 82 0 chr3 94114593 94114654 -65485129 + MIRb SINE MIR 165 230 -38 1 1303 736 185 67 0 chr3 94116101 94116236 -65483547 + B1_Mur4 SINE Alu 1 144 -6 1 1303 208 77 51 0 chr3 94116241 94116280 -65483503 + (CAAAAA)n Simple_repeat Simple_repeat 2 42 0 1 1303 764 210 129 0 chr3 94116297 94116483 -65483300 - B3 SINE B2 -6 210 1 1 1303 303 26 0 0 chr3 94116958 94116997 -65482786 + U2 snRNA snRNA 1 39 -149 1 1303 379 264 139 0 chr3 94117180 94117309 -65482474 + B1_Mur2 SINE Alu 3 149 0 1 1303 848 141 0 0 chr3 94117313 94117455 -65482328 + B2_Mm2 SINE B2 2 143 -52 1 1303 357 59 0 0 chr3 94117436 94117487 -65482296 + B1_Mur4 SINE Alu 95 145 -5 1 1303 683 176 84 49 chr3 94117506 94117649 -65482134 + B1_Mur2 SINE Alu 1 148 -1 1 1303 222 162 0 0 chr3 94117671 94117705 -65482078 + B3A SINE B2 5 38 -160 1 1303 1057 198 70 4 chr3 94117705 94117964 -65481819 - ORR1D1 LTR MaLR 0 374 99 1 1303 811 141 15 15 chr3 94117964 94118094 -65481689 + B1_Mur1 SINE Alu 2 131 -18 1 1303 726 12 0 0 chr3 94118106 94118189 -65481594 + (TAGA)n Simple_repeat Simple_repeat 4 86 0 1 1303 366 217 35 35 chr3 94118205 94118291 -65481492 + RSINE1 SINE B4 24 109 -56 1 1303 627 223 0 73 chr3 94118297 94118447 -65481336 + B1_Mur1 SINE Alu 6 144 -5 1 1303 294 194 0 0 chr3 94118447 94118509 -65481274 + GA-rich Low_complexity Low_complexity 2 63 0 1 1303 392 284 73 0 chr3 94118526 94118635 -65481148 + PB1D10 SINE Alu 1 117 0 1 1303 1727 207 42 39 chr3 94118643 94119100 -65480683 - Lx9 LINE L1 -5 7639 7182 1 1303 322 279 10 41 chr3 94119562 94119659 -65480124 - RSINE1 SINE B4 -69 96 3 1 1303 261 0 0 0 chr3 94119662 94119691 -65480092 + (TTG)n Simple_repeat Simple_repeat 2 30 0 1 1303 1282 217 82 6 chr3 94120442 94120752 -65479031 - Lx3C LINE L1 -1 6999 6663 1 1303 225 125 0 0 chr3 94120753 94120785 -65478998 + Lx4B LINE L1 6193 6224 -834 1 1303 199 282 62 25 chr3 94120801 94120881 -65478902 + MIR SINE MIR 90 172 -90 1 1303 232 264 81 0 chr3 94121136 94121223 -65478560 + MIR SINE MIR 47 140 -68 1 1303 379 210 96 48 chr3 94121600 94121725 -65478058 + B1F SINE Alu 1 131 -18 1 1303 267 235 10 58 chr3 94121737 94121841 -65477942 + GA-rich Low_complexity Low_complexity 1 99 0 1 1303 621 202 14 65 chr3 94121993 94122221 -65477562 + RMER21B LTR ERV1 272 558 -389 1 1303 2589 147 32 2 chr3 94122551 94122960 -65476823 - MTC LTR MaLR 0 421 1 1 1303 337 308 213 10 chr3 94123132 94123437 -65476346 + L2 LINE L2 1339 1705 -1714 1 1303 4072 168 60 8 chr3 94123549 94124247 -65475536 - RMER1B Other Other 0 1066 273 1 1303 3005 78 27 15 chr3 94124247 94124649 -65475134 - MTB_Mm LTR MaLR 0 407 1 1 1303 3693 219 73 58 chr3 94124649 94124851 -65474932 - RMER1A Other Other -758 272 115 1 1303 1166 228 62 14 chr3 94124964 94125315 -65474468 - MTD LTR MaLR -14 386 6 1 1303 1172 49 14 0 chr3 94125317 94125460 -65474323 + B1_Mus1 SINE Alu 2 146 -2 1 1303 180 0 0 0 chr3 94125460 94125480 -65474303 + (TTAAA)n Simple_repeat Simple_repeat 3 22 0 1 1303 341 256 43 22 chr3 94125764 94125856 -65473927 + B1F2 SINE Alu 10 103 -46 1 1303 318 296 10 58 chr3 94125856 94125868 -65473915 + ID_B1 SINE B4 91 189 -35 1 1303 234 85 31 92 chr3 94126923 94126988 -65472795 + (TTGG)n Simple_repeat Simple_repeat 2 62 0 1 1303 988 117 7 0 chr3 94126988 94127133 -65472650 - B1_Mus1 SINE Alu 0 148 3 1 1303 844 243 84 0 chr3 94127140 94127342 -65472441 - ID_B1 SINE B4 -3 221 3 1 1303 24 32 0 0 chr3 94127839 94127870 -65471913 + AT_rich Low_complexity Low_complexity 1 31 0 1 1303 440 363 0 0 chr3 94128665 94128778 -65471005 - RSINE1 SINE B4 -17 148 36 1 1303 331 318 110 10 chr3 94128983 94129183 -65470600 - LTR80A LTR ERVL -192 391 172 1 1303 289 145 235 24 chr3 94129567 94129652 -65470131 - L1M3 LINE L1 -1180 4960 4858 1 1303 850 284 18 14 chr3 94129664 94129885 -65469898 + B4A SINE B4 8 229 -63 1 1303 577 27 0 0 chr3 94129884 94129959 -65469824 + B1_Mus2 SINE Alu 73 147 0 1 1303 303 253 85 32 chr3 94130043 94130137 -65469646 - L1M3 LINE L1 -1394 4746 4648 1 1303 26 0 0 0 chr3 94130221 94130247 -65469536 + AT_rich Low_complexity Low_complexity 1 26 0 1 1303 1156 76 7 0 chr3 94130295 94130440 -65469343 + B1_Mus2 SINE Alu 2 147 0 1 1303 28 0 0 0 chr3 94130440 94130468 -65469315 + AT_rich Low_complexity Low_complexity 1 28 0 1 1303 631 123 89 37 chr3 94130507 94130642 -65469141 + B1_Mus2 SINE Alu 6 147 0 1 1303 701 150 113 0 chr3 94131778 94131911 -65467872 - B1_Mur1 SINE Alu 0 149 2 1 1303 327 49 0 0 chr3 94132000 94132041 -65467742 + (A)n Simple_repeat Simple_repeat 1 41 0 1 1303 591 15 0 0 chr3 94132306 94132374 -65467409 + (TAGA)n Simple_repeat Simple_repeat 1 68 0 1 1303 513 216 67 138 chr3 94132383 94132593 -65467190 + B3A SINE B2 1 195 0 1 1303 729 224 43 27 chr3 94132917 94133105 -65466678 - MER3 DNA MER1_type -18 191 1 2 1303 480 237 141 0 chr3 94133181 94133316 -65466467 - RSINE1 SINE B4 -9 156 3 2 1303 604 252 8 0 chr3 94133954 94134085 -65465698 - ID_B1 SINE B4 -3 221 90 2 1303 312 290 10 51 chr3 94134000 94134098 -65465685 - PB1D10 SINE Alu -23 94 1 2 1303 205 27 26 51 chr3 94134100 94134139 -65465644 + (TTGG)n Simple_repeat Simple_repeat 4 41 0 2 1303 279 54 0 0 chr3 94134139 94134176 -65465607 + (GTTTG)n Simple_repeat Simple_repeat 2 38 0 2 1303 246 208 24 143 chr3 94134191 94134275 -65465508 - ID4_ SINE ID -5 78 5 2 1303 521 241 30 15 chr3 94134568 94134703 -65465080 - MTD LTR MaLR 0 419 283 2 1303 524 233 117 0 chr3 94134996 94135116 -65464667 - B1_Mur1 SINE Alu -7 142 9 2 1303 204 40 0 0 chr3 94135191 94135216 -65464567 + (GGA)n Simple_repeat Simple_repeat 3 27 0 2 1303 434 122 27 0 chr3 94135217 94135291 -65464492 + PB1D9 SINE Alu 45 120 0 2 1303 630 71 0 0 chr3 94135294 94135378 -65464405 + (GGGA)n Simple_repeat Simple_repeat 4 87 0 2 1303 348 351 77 13 chr3 94136129 94136285 -65463498 - MLT1C LTR MaLR -2 465 300 2 1303 678 285 6 0 chr3 94136513 94136671 -65463112 - RSINE1 SINE B4 0 165 7 2 1303 7658 147 51 5 chr3 94136731 94138014 -65461769 - Lx4B LINE L1 -4 7054 5713 2 1303 477 225 15 37 chr3 94138029 94138163 -65461620 - L1_Mur2 LINE L1 -6055 657 527 2 1303 2162 112 9 69 chr3 94138718 94139064 -65460719 + ORR1A4 LTR MaLR 5 329 0 2 1303 441 54 0 0 chr3 94139263 94139319 -65460464 + (TTGG)n Simple_repeat Simple_repeat 2 57 0 2 1303 435 231 33 100 chr3 94139364 94139484 -65460299 - B1_Mur2 SINE Alu 0 120 9 2 1303 363 23 0 0 chr3 94139510 94139554 -65460229 + (ATTG)n Simple_repeat Simple_repeat 1 44 0 2 1303 423 269 0 0 chr3 94139579 94139679 -65460104 + B1_Mur4 SINE Alu 9 107 -13 2 1303 329 206 0 80 chr3 94139692 94139792 -65459991 - B3A SINE B2 0 198 107 2 1303 2730 249 119 24 chr3 94139870 94140711 -65459072 - Lx8 LINE L1 -2 7471 6551 2 1303 230 222 15 45 chr3 94140785 94140851 -65458932 - MADE2 DNA Mariner 0 80 17 2 1303 2197 104 66 14 chr3 94140929 94141279 -65458504 - RLTR9A LTR ERVK 0 368 1 2 1303 23 0 0 0 chr3 94142362 94142385 -65457398 + AT_rich Low_complexity Low_complexity 1 23 0 2 1303 285 242 82 16 chr3 94142587 94142709 -65457074 + HAL1 LINE L1 2040 2169 -338 2 1303 1168 246 58 67 chr3 94143117 94143488 -65456295 - MTE-int LTR MaLR -176 1559 1222 2 1303 367 280 90 0 chr3 94143692 94143792 -65455991 + PB1D10 SINE Alu 2 110 -7 2 1303 246 95 0 0 chr3 94144684 94144726 -65455057 + (A)n Simple_repeat Simple_repeat 1 42 0 2 1303 228 211 17 34 chr3 94144900 94144959 -65454824 + RLTR14 LTR ERV1 267 324 -58 2 1303 581 101 10 0 chr3 94147476 94147575 -65452208 + (CA)n Simple_repeat Simple_repeat 1 100 0 2 1303 281 270 107 29 chr3 94147649 94147752 -65452031 + PB1D9 SINE Alu 2 112 -8 2 1303 458 224 37 0 chr3 94149553 94149660 -65450123 + PB1D7 SINE Alu 10 120 0 2 1303 608 250 39 7 chr3 94151108 94151261 -65448522 + B3 SINE B2 59 216 0 2 1303 214 263 17 50 chr3 94151554 94151614 -65448169 + B4A SINE B4 83 140 -152 2 1303 333 296 0 122 chr3 94151566 94151689 -65448094 + PB1D10 SINE Alu 7 114 -3 2 1303 638 287 94 33 chr3 94151710 94151955 -65447828 + B4A SINE B4 24 283 -9 2 1303 1062 43 65 0 chr3 94153842 94153980 -65445803 - B1_Mus1 SINE Alu 0 148 2 2 1303 212 167 0 0 chr3 94154124 94154166 -65445617 + T-rich Low_complexity Low_complexity 1 42 0 2 1303 717 207 28 0 chr3 94154200 94154345 -65445438 + B1_Mur3 SINE Alu 1 149 0 2 1303 429 20 0 0 chr3 94154387 94154437 -65445346 + (TC)n Simple_repeat Simple_repeat 2 51 0 2 1303 940 149 60 0 chr3 94154583 94154751 -65445032 + B3 SINE B2 35 212 -4 2 1303 25 31 0 0 chr3 94154751 94154783 -65445000 + AT_rich Low_complexity Low_complexity 1 32 0 2 1303 360 0 0 0 chr3 94155208 94155248 -65444535 + (CA)n Simple_repeat Simple_repeat 2 41 0 2 1303 1022 193 168 48 chr3 94155773 94156038 -65443745 + ORR1C2 LTR MaLR 1 303 -81 2 1303 2742 201 157 40 chr3 94156038 94156833 -65442950 + RMER19B LTR ERVK 3 890 -12 2 1303 624 116 11 0 chr3 94156836 94156931 -65442852 + ORR1C2 LTR MaLR 289 384 0 2 1303 3240 104 39 54 chr3 94156953 94157473 -65442310 + RLTR1B LTR ERV1 1 512 0 2 1303 902 75 0 22 chr3 94157678 94157815 -65441968 + B1_Mus1 SINE Alu 15 148 0 2 1303 213 164 15 76 chr3 94157939 94157962 -65441821 + T-rich Low_complexity Low_complexity 43 63 0 2 1303 321 68 0 0 chr3 94157962 94158006 -65441777 + (GTTTG)n Simple_repeat Simple_repeat 5 48 0 2 1303 213 164 15 76 chr3 94158006 94158048 -65441735 + T-rich Low_complexity Low_complexity 2 42 0 2 1303 364 264 28 9 chr3 94158208 94158315 -65441468 + MLT1A1 LTR MaLR 1 109 -299 2 1303 262 273 127 25 chr3 94158352 94158431 -65441352 - RSINE1 SINE B4 -11 154 68 2 1303 236 341 0 0 chr3 94158754 94158839 -65440944 + CT-rich Low_complexity Low_complexity 3 87 0 2 1303 476 216 216 0 chr3 94158839 94158950 -65440833 - B1_Mur2 SINE Alu -14 135 1 2 1303 666 220 35 0 chr3 94158983 94159124 -65440659 + B1_Mus1 SINE Alu 3 148 0 2 1303 343 218 51 0 chr3 94159134 94159212 -65440571 + RMER5 LTR ERV1 5 86 -448 2 1303 582 250 27 0 chr3 94159205 94159353 -65440430 + RMER5 LTR ERV1 203 354 -180 2 1303 537 16 0 0 chr3 94159504 94159566 -65440217 + (TC)n Simple_repeat Simple_repeat 1 62 0 2 1303 1916 99 31 22 chr3 94159606 94159925 -65439858 - RLTRETN_Mm LTR ERVK 0 322 1 2 1303 239 196 0 0 chr3 94159927 94159973 -65439810 + RMER21A LTR ERV1 639 684 -263 2 1303 1066 142 11 11 chr3 94160029 94160214 -65439569 + RMER5 LTR ERV1 350 534 0 2 1303 291 246 0 0 chr3 94160229 94160290 -65439493 - RSINE1 SINE B4 -93 72 12 2 1303 3222 120 24 48 chr3 94160349 94160972 -65438811 + RMER6A LTR ERVK 1 608 -148 2 1303 333 264 38 29 chr3 94161030 94161146 -65438637 + MLT1A1 LTR MaLR 249 408 0 2 1303 231 231 138 0 chr3 94161629 94161694 -65438089 + L2a LINE L2 1747 1820 -1599 2 1303 375 294 66 0 chr3 94161700 94161836 -65437947 + B1F2 SINE Alu 5 149 0 2 1303 751 140 0 52 chr3 94161851 94161987 -65437796 + B1_Mur2 SINE Alu 18 146 -3 2 1303 570 263 69 0 chr3 94162025 94162206 -65437577 + B3 SINE B2 3 198 0 2 1303 767 150 98 0 chr3 94162221 94162354 -65437429 + B1_Mus1 SINE Alu 1 146 -2 2 1303 279 79 0 0 chr3 94162355 94162393 -65437390 + (TAAA)n Simple_repeat Simple_repeat 4 41 0 2 1303 312 27 0 0 chr3 94162393 94162430 -65437353 + (CA)n Simple_repeat Simple_repeat 1 37 0 2 1303 683 314 41 27 chr3 94162432 94162651 -65437132 + ID_B1 SINE B4 2 223 -1 2 1303 198 0 0 0 chr3 94162787 94162809 -65436974 + (TG)n Simple_repeat Simple_repeat 2 23 0 2 1303 489 221 84 0 chr3 94162922 94163017 -65436766 - B3A SINE B2 -95 103 1 2 1303 275 49 24 0 chr3 94163048 94163089 -65436694 + (TTTG)n Simple_repeat Simple_repeat 3 44 0 2 1303 948 78 16 0 chr3 94163090 94163219 -65436564 - B1_Mus2 SINE Alu -12 135 5 2 1303 295 276 21 31 chr3 94163229 94163326 -65436457 + L2a LINE L2 1927 2022 -1397 2 1303 555 237 187 47 chr3 94163436 94163671 -65436112 + L2a LINE L2 2291 2558 -861 2 1303 259 284 14 0 chr3 94163939 94164013 -65435770 + L2a LINE L2 3352 3426 0 2 1303 780 212 28 38 chr3 94164080 94164291 -65435492 + B3 SINE B2 2 210 -6 2 1303 221 277 148 35 chr3 94164367 94164509 -65435274 - MIRb SINE MIR -61 207 50 2 1303 1115 188 61 0 chr3 94164845 94165042 -65434741 + B3 SINE B2 1 209 -7 2 1303 207 283 10 42 chr3 94165677 94165773 -65434010 + G-rich Low_complexity Low_complexity 4 96 0 2 1303 833 223 45 15 chr3 94166855 94166902 -65432881 - B3 SINE B2 -1 215 168 2 1303 186 43 0 0 chr3 94166902 94166925 -65432858 + (TATG)n Simple_repeat Simple_repeat 4 26 0 2 1303 853 223 45 15 chr3 94166925 94167077 -65432706 - B3 SINE B2 -49 167 10 2 1303 189 256 48 60 chr3 94168577 94168660 -65431123 - MER5A DNA MER1_type -27 162 81 2 1303 694 196 64 18 chr3 94168675 94168719 -65431064 - MTE2a LTR MaLR 0 379 336 2 1303 378 0 0 0 chr3 94168719 94168761 -65431022 + (CA)n Simple_repeat Simple_repeat 1 42 0 2 1303 694 196 64 18 chr3 94168761 94168887 -65430896 - MTE2a LTR MaLR -44 335 201 2 1303 670 173 116 43 chr3 94168897 94169057 -65430726 + B3A SINE B2 4 165 -30 2 1303 375 23 0 0 chr3 94169057 94169101 -65430682 + (TG)n Simple_repeat Simple_repeat 2 45 0 2 1303 669 167 21 70 chr3 94169106 94169248 -65430535 + B1_Mur4 SINE Alu 3 137 -13 2 1303 860 183 48 11 chr3 94169248 94169436 -65430347 + B2_Mm2 SINE B2 1 195 0 2 1303 353 238 100 140 chr3 94169436 94169468 -65430315 + B2_Mm2 SINE B2 169 193 -2 2 1303 665 250 7 0 chr3 94169476 94169620 -65430163 + B1_Mur1 SINE Alu 5 149 0 2 1303 802 161 58 93 chr3 94169675 94169880 -65429903 - MTE2a LTR MaLR -181 198 1 2 1303 212 312 38 0 chr3 94170178 94170192 -65429591 + B4 SINE B4 70 86 -206 2 1303 416 224 108 1 chr3 94170192 94170305 -65429478 + B1_Mus2 SINE Alu 1 123 -24 2 1303 474 18 0 0 chr3 94170724 94170779 -65429004 + (CA)n Simple_repeat Simple_repeat 2 56 0 2 1303 319 231 101 13 chr3 94171033 94171112 -65428671 + RSINE1 SINE B4 8 93 -72 2 1303 198 0 0 0 chr3 94171267 94171289 -65428494 + (CTGTG)n Simple_repeat Simple_repeat 4 25 0 2 1303 227 259 110 12 chr3 94171657 94171739 -65428044 - MIRb SINE MIR -83 185 96 2 1303 582 256 23 40 chr3 94172149 94172324 -65427459 - ID_B1 SINE B4 -4 220 49 2 1303 1645 44 5 0 chr3 94172963 94173168 -65426615 - L1Md_F2 LINE L1 -362 6220 6015 2 1303 2728 60 0 3 chr3 94173168 94173534 -65426249 + L1Md_F2 LINE L1 6218 6582 0 2 1303 185 35 0 65 chr3 94173619 94173650 -65426133 + (TGGGGG)n Simple_repeat Simple_repeat 3 31 0 2 1303 403 264 54 18 chr3 94173920 94174032 -65425751 + PB1D7 SINE Alu 1 116 -4 2 1303 989 215 5 10 chr3 94174362 94174564 -65425219 + B3 SINE B2 15 215 -1 2 1303 1433 58 16 0 chr3 94174944 94175132 -65424651 - B2_Mm2 SINE B2 -3 192 2 3 1303 542 362 54 50 chr3 94175133 94175305 -65424478 + B4A SINE B4 50 218 -74 3 1303 261 0 0 0 chr3 94175305 94175334 -65424449 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 3 1303 542 362 54 50 chr3 94175334 94175402 -65424381 + B4A SINE B4 219 290 -2 3 1303 252 0 0 0 chr3 94176277 94176305 -65423478 + (CA)n Simple_repeat Simple_repeat 1 28 0 3 1303 221 343 56 95 chr3 94176371 94176603 -65423180 + MIRb SINE MIR 43 265 -3 3 1303 218 203 0 86 chr3 94176905 94176975 -65422808 + GA-rich Low_complexity Low_complexity 3 66 0 3 1303 192 255 19 21 chr3 94178508 94178568 -65421215 - L2a LINE L2 -76 3350 3241 3 1303 222 37 0 0 chr3 94179162 94179189 -65420594 + (A)n Simple_repeat Simple_repeat 1 27 0 3 1303 480 268 91 7 chr3 94180573 94180716 -65419067 + MIR SINE MIR 32 186 -76 3 1303 191 218 18 0 chr3 94182895 94182950 -65416833 + (CA)n Simple_repeat Simple_repeat 1 56 0 3 1303 375 23 0 0 chr3 94183439 94183483 -65416300 + (TG)n Simple_repeat Simple_repeat 2 45 0 3 1303 245 310 79 10 chr3 94183483 94183584 -65416199 - RSINE1 SINE B4 -54 111 4 3 1303 282 331 59 33 chr3 94183572 94183589 -65416194 - B4 SINE B4 -50 242 86 3 1303 346 296 103 7 chr3 94183589 94183725 -65416058 - B1_Mur1 SINE Alu 0 149 1 3 1303 310 176 24 0 chr3 94184912 94184997 -65414786 + (TCTA)n Simple_repeat Simple_repeat 4 90 0 3 1303 511 282 69 73 chr3 94185140 94185358 -65414425 + MIR SINE MIR 5 221 -41 3 1303 473 300 7 37 chr3 94185375 94185510 -65414273 + RSINE1 SINE B4 35 165 0 3 1303 22 35 0 0 chr3 94185526 94185555 -65414228 + AT_rich Low_complexity Low_complexity 1 29 0 3 1303 471 229 57 0 chr3 94185558 94185663 -65414120 + PB1D10 SINE Alu 1 111 -6 3 1303 622 292 19 0 chr3 94185669 94185830 -65413953 + RSINE1 SINE B4 2 165 0 3 1303 1130 68 0 0 chr3 94185850 94185998 -65413785 + B1_Mus1 SINE Alu 1 148 0 3 1303 360 0 0 0 chr3 94186869 94186909 -65412874 + (TTG)n Simple_repeat Simple_repeat 2 41 0 3 1303 303 215 15 15 chr3 94186909 94186975 -65412808 - ID4 SINE ID -5 78 13 3 1303 1124 61 0 7 chr3 94187146 94187294 -65412489 - B1_Mm SINE Alu 0 147 1 3 1303 442 239 0 11 chr3 94187296 94187389 -65412394 - PB1D7 SINE Alu -2 118 27 3 1303 405 0 0 0 chr3 94187822 94187867 -65411916 + (CA)n Simple_repeat Simple_repeat 1 45 0 3 1303 502 248 37 0 chr3 94189128 94189237 -65410546 - ID_B1 SINE B4 -8 216 104 3 1303 255 143 163 0 chr3 94189584 94189633 -65410150 - tRNA-Ala-GCY_ tRNA tRNA -11 64 8 3 1303 231 233 150 0 chr3 94189633 94189644 -65410139 - ID4 SINE ID -13 70 2 3 1303 243 0 0 0 chr3 94189655 94189682 -65410101 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 3 1303 822 161 0 14 chr3 94189682 94189816 -65409967 - B1_Mur4 SINE Alu -8 142 9 3 1303 334 289 52 98 chr3 94189816 94189850 -65409933 - B4 SINE B4 -71 221 61 3 1303 443 48 16 0 chr3 94189920 94189982 -65409801 + (TTCC)n Simple_repeat Simple_repeat 4 66 0 3 1303 504 250 0 0 chr3 94189982 94190090 -65409693 - B1_Mur1 SINE Alu -21 128 21 3 1303 188 338 150 0 chr3 94190208 94190341 -65409442 + MIR3 SINE MIR 40 192 -16 3 1303 446 300 136 40 chr3 94193886 94193966 -65405817 - RMER30 DNA MER1_type -7 195 117 3 1303 815 49 41 20 chr3 94193966 94194113 -65405670 + (TTGG)n Simple_repeat Simple_repeat 2 151 0 3 1303 896 133 15 0 chr3 94194116 94194251 -65405532 - B1_Mur4 SINE Alu -13 137 1 3 1303 446 300 136 40 chr3 94194251 94194343 -65405440 - RMER30 DNA MER1_type -86 116 2 3 1303 370 222 22 22 chr3 94195971 94196063 -65403720 - MER5B DNA MER1_type -20 158 67 3 1303 214 102 82 0 chr3 94196809 94196858 -65402925 + (CAGAGA)n Simple_repeat Simple_repeat 2 54 0 3 1303 192 305 105 0 chr3 94197445 94197540 -65402243 - MIRc SINE MIR -38 230 126 3 1303 590 246 0 31 chr3 94197648 94197778 -65402005 + ID_B1 SINE B4 92 217 -7 3 1303 594 253 25 31 chr3 94197824 94197987 -65401796 + RSINE1 SINE B4 2 163 -2 3 1303 360 119 0 0 chr3 94198192 94198251 -65401532 + (TG)n Simple_repeat Simple_repeat 1 59 0 3 1303 407 296 73 131 chr3 94198285 94198491 -65401292 - B4 SINE B4 -18 274 81 3 1303 459 92 0 0 chr3 94198491 94198556 -65401227 + (TC)n Simple_repeat Simple_repeat 1 65 0 3 1303 272 222 0 18 chr3 94198558 94198613 -65401170 + polypyrimidine Low_complexity Low_complexity 4 57 0 3 1303 923 170 0 0 chr3 94198613 94198760 -65401023 - B1_Mus2 SINE Alu 0 147 1 3 1303 286 246 14 14 chr3 94198762 94198836 -65400947 - B4 SINE B4 -198 94 21 3 1303 460 216 43 43 chr3 94199225 94199341 -65400442 - PB1D10 SINE Alu 0 117 2 3 1303 250 219 22 79 chr3 94200076 94200165 -65399618 + L2a LINE L2 3342 3425 -1 3 1303 225 0 0 0 chr3 94202432 94202457 -65397326 + (T)n Simple_repeat Simple_repeat 1 25 0 3 1303 186 43 0 0 chr3 94202686 94202709 -65397074 + (CA)n Simple_repeat Simple_repeat 1 23 0 3 1303 186 43 0 0 chr3 94203153 94203176 -65396607 + (A)n Simple_repeat Simple_repeat 1 23 0 3 1303 324 0 0 0 chr3 94207921 94207957 -65391826 + (CAGG)n Simple_repeat Simple_repeat 2 37 0 3 1303 1017 220 9 5 chr3 94209281 94209496 -65390287 - B3 SINE B2 0 216 1 3 1303 507 226 113 0 chr3 94209517 94209641 -65390142 - B1_Mur1 SINE Alu -7 142 5 3 1303 324 0 0 0 chr3 94209823 94209859 -65389924 + (TG)n Simple_repeat Simple_repeat 2 37 0 3 1303 191 358 26 35 chr3 94209874 94209987 -65389796 - MIRb SINE MIR -144 124 13 3 1303 1055 182 22 31 chr3 94211083 94211310 -65388473 + URR1B DNA MER1_type 1 225 0 3 1303 373 244 97 40 chr3 94211612 94211736 -65388047 - B3A SINE B2 -3 213 83 3 1303 467 255 120 33 chr3 94212121 94212271 -65387512 + RSINE1 SINE B4 3 165 0 3 1303 744 196 0 0 chr3 94212276 94212455 -65387328 + (CA)n Simple_repeat Simple_repeat 2 180 0 3 1303 777 185 0 0 chr3 94212467 94212645 -65387138 + (CA)n Simple_repeat Simple_repeat 1 178 0 3 1303 337 291 145 28 chr3 94212867 94213012 -65386771 + RSINE1 SINE B4 4 165 0 3 1303 249 283 0 0 chr3 94213111 94213164 -65386619 + B3A SINE B2 9 61 -137 3 1303 337 298 72 8 chr3 94213221 94213346 -65386437 + L1M5 LINE L1 4384 4516 -1630 3 1303 314 330 289 0 chr3 94213399 94213651 -65386132 + L1ME3A LINE L1 5750 6074 -99 3 1303 235 337 0 67 chr3 94213687 94213792 -65385991 + ID_B1 SINE B4 78 175 -49 3 1303 428 246 0 43 chr3 94213700 94213815 -65385968 + PB1D7 SINE Alu 10 119 -1 3 1303 1009 226 10 5 chr3 94213920 94214129 -65385654 + B3 SINE B2 2 211 -5 3 1303 368 300 118 61 chr3 94214135 94214415 -65385368 + L1M5 LINE L1 4863 5158 -988 3 1303 620 271 115 0 chr3 94214417 94214609 -65385174 + B4A SINE B4 1 214 -78 3 1303 712 193 22 0 chr3 94214638 94214773 -65385010 - B1_Mus2 SINE Alu 0 147 10 3 1303 231 319 50 106 chr3 94214640 94214801 -65384982 - B4A SINE B4 -68 224 73 3 1303 216 0 0 0 chr3 94214869 94214893 -65384890 + (CA)n Simple_repeat Simple_repeat 1 24 0 3 1303 1044 177 63 10 chr3 94214943 94215148 -65384635 + B3 SINE B2 1 216 0 3 1303 265 305 100 50 chr3 94215232 94215491 -65384292 + L1MC LINE L1 5314 5585 -2297 3 1303 305 247 32 0 chr3 94215664 94215757 -65384026 + PB1D9 SINE Alu 25 120 0 3 1303 211 282 0 60 chr3 94215752 94215835 -65383948 + B1_Mur1 SINE Alu 72 149 0 3 1303 233 236 236 0 chr3 94216195 94216267 -65383516 + PB1 SINE Alu 17 105 -22 3 1303 201 182 0 0 chr3 94216270 94216303 -65383480 + (TAA)n Simple_repeat Simple_repeat 3 35 0 3 1303 213 244 0 0 chr3 94216349 94216390 -65383393 - MIRm SINE MIR -3 273 233 3 1303 259 270 64 38 chr3 94217646 94217752 -65382031 - PB1D10 SINE Alu 0 117 9 3 1303 1337 80 16 0 chr3 94217860 94218047 -65381736 - B2_Mm2 SINE B2 -2 193 4 3 1303 410 188 86 38 chr3 94218058 94218163 -65381620 - ID_B1 SINE B4 -7 217 108 3 1303 240 324 39 19 chr3 94219219 94219323 -65380460 + MIR3 SINE MIR 86 191 -17 3 1303 470 211 143 26 chr3 94219558 94219711 -65380072 - B3A SINE B2 -4 191 30 3 1303 653 289 84 42 chr3 94220087 94220325 -65379458 - B4A SINE B4 -2 290 43 3 1303 238 264 35 138 chr3 94220414 94220447 -65379336 + MT2B2 LTR ERVL 134 151 -433 3 1303 696 181 14 48 chr3 94220447 94220592 -65379191 + B1_Mur1 SINE Alu 2 141 -8 3 1303 360 318 0 0 chr3 94220620 94220727 -65379056 - PB1D10 SINE Alu -8 109 3 3 1303 1149 35 0 14 chr3 94220821 94220968 -65378815 - B1_Mus2 SINE Alu 0 147 3 3 1303 234 212 121 0 chr3 94221939 94222005 -65377778 - ID4_ SINE ID -9 74 1 3 1303 219 272 215 11 chr3 94222068 94222161 -65377622 + B1F1 SINE Alu 1 112 -37 3 1303 320 154 31 0 chr3 94222187 94222252 -65377531 + A-rich Low_complexity Low_complexity 4 70 0 3 1303 665 279 53 79 chr3 94222259 94222562 -65377221 - L2 LINE L2 -1030 2389 2095 3 1303 235 319 58 58 chr3 94222573 94222693 -65377090 + B1_Mus1 SINE Alu 11 130 -18 3 1303 2203 133 57 138 chr3 94222693 94223200 -65376583 + RMER4A LTR ERVK 1 466 0 3 1303 299 270 0 73 chr3 94223220 94223316 -65376467 + ID_B1 SINE B4 80 168 -56 3 1303 388 246 52 32 chr3 94223230 94223342 -65376441 + PB1D7 SINE Alu 6 124 -25 3 1303 261 294 0 0 chr3 94223342 94223393 -65376390 + ID4 SINE ID 1 51 -32 3 1303 353 330 43 0 chr3 94223479 94223594 -65376189 - L2 LINE L2 -1317 2102 1983 3 1303 1301 107 11 0 chr3 94223694 94223871 -65375912 + B2_Mm1t SINE B2 1 179 -14 3 1303 286 206 0 35 chr3 94223891 94223975 -65375808 + B2_Mm2 SINE B2 22 102 -91 4 1303 315 0 0 0 chr3 94223982 94224017 -65375766 + (TG)n Simple_repeat Simple_repeat 2 36 0 4 1303 275 263 216 29 chr3 94224075 94224177 -65375606 + B3A SINE B2 46 166 -32 4 1303 281 180 0 0 chr3 94224193 94224243 -65375540 + ID_B1 SINE B4 174 223 -1 4 1303 744 240 48 29 chr3 94224785 94224995 -65374788 + B3 SINE B2 3 216 0 4 1303 180 176 0 0 chr3 94225005 94225039 -65374744 + GA-rich Low_complexity Low_complexity 3 36 0 4 1303 478 68 32 54 chr3 94225833 94225926 -65373857 - L1Md_F2 LINE L1 0 6582 6492 4 1303 24 53 0 0 chr3 94226259 94226297 -65373486 + AT_rich Low_complexity Low_complexity 1 38 0 4 1303 872 158 0 27 chr3 94226465 94226615 -65373168 - B1_Mus1 SINE Alu -1 147 2 4 1303 219 261 31 0 chr3 94228081 94228146 -65371637 + ID4 SINE ID 4 70 -13 4 1303 21 36 0 0 chr3 94228261 94228289 -65371494 + AT_rich Low_complexity Low_complexity 1 28 0 4 1303 228 35 0 0 chr3 94228759 94228788 -65370995 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 4 1303 598 196 92 26 chr3 94228852 94229004 -65370779 + RSINE1 SINE B4 4 165 0 4 1303 22 0 0 0 chr3 94230274 94230296 -65369487 + AT_rich Low_complexity Low_complexity 1 22 0 4 1303 253 319 0 14 chr3 94230315 94230388 -65369395 + (TG)n Simple_repeat Simple_repeat 1 72 0 4 1303 918 280 43 43 chr3 94230437 94230717 -65369066 - B4 SINE B4 0 292 13 4 1303 1793 210 70 18 chr3 94230844 94231242 -65368541 - Lx8 LINE L1 -134 7339 6921 4 1303 1179 128 11 0 chr3 94232318 94232498 -65367285 + B2_Mm1t SINE B2 2 183 -10 4 1303 835 224 45 10 chr3 94233490 94233688 -65366095 - B3 SINE B2 -10 206 2 4 1303 463 286 82 8 chr3 94233688 94233822 -65365961 - B3A SINE B2 -1 197 54 4 1303 699 296 9 18 chr3 94234157 94234381 -65365402 + ID_B1 SINE B4 1 222 -2 4 1303 278 280 46 9 chr3 94235889 94235997 -65363786 + PB1D10 SINE Alu 1 112 -5 4 1303 1013 219 28 32 chr3 94236310 94236527 -65363256 + B3 SINE B2 1 216 0 4 1303 408 325 44 0 chr3 94236543 94236657 -65363126 + ID_B1 SINE B4 94 212 -12 4 1303 324 0 0 0 chr3 94236926 94236962 -65362821 + (TTTTG)n Simple_repeat Simple_repeat 2 37 0 4 1303 1077 65 0 28 chr3 94236962 94237104 -65362679 - B1_Mus1 SINE Alu -10 138 1 4 1303 373 282 141 20 chr3 94237653 94237852 -65361931 + MIRb SINE MIR 8 230 -38 4 1303 244 205 25 13 chr3 94237863 94237942 -65361841 + (TTGG)n Simple_repeat Simple_repeat 4 83 0 4 1303 422 302 8 17 chr3 94237976 94238094 -65361689 - PB1D10 SINE Alu 0 117 1 4 1303 1139 68 7 0 chr3 94239087 94239233 -65360550 + B1_Mus2 SINE Alu 1 147 0 4 1303 225 65 0 0 chr3 94239233 94239264 -65360519 + (A)n Simple_repeat Simple_repeat 1 31 0 4 1303 235 281 35 58 chr3 94239528 94239615 -65360168 - PB1D10 SINE Alu -12 105 21 4 1303 194 272 99 0 chr3 94239725 94239806 -65359977 + MIR3 SINE MIR 111 199 -9 4 162 1141 68 0 26 chr3 94240694 94240845 -65358938 + B1_Mm SINE Alu 1 147 0 4 1304 351 303 117 21 chr3 94240870 94241015 -65358768 - MamRep38 DNA hAT -63 232 74 4 1304 392 366 0 8 chr3 94241165 94241297 -65358486 + B1_Mur1 SINE Alu 18 148 -1 4 1304 1509 229 131 8 chr3 94241492 94241858 -65357925 + MTD LTR MaLR 1 411 -8 4 1304 299 272 212 52 chr3 94241925 94242096 -65357687 - L2a LINE L2 0 3426 3214 4 1304 782 181 68 0 chr3 94242096 94242229 -65357554 + B1_Mur1 SINE Alu 1 142 -7 4 1304 299 272 212 52 chr3 94242229 94242344 -65357439 - L2a LINE L2 -213 3213 3094 4 1304 372 189 0 40 chr3 94242347 94242434 -65357349 + B1_Mur4 SINE Alu 43 148 -2 4 1304 360 240 75 57 chr3 94242700 94242806 -65356977 + PB1D10 SINE Alu 10 117 0 4 1304 2609 71 6 6 chr3 94242839 94243180 -65356603 + L1_Mus3 LINE L1 6298 6638 0 4 1304 1381 86 27 5 chr3 94243185 94243373 -65356410 + B2_Mm2 SINE B2 1 192 -3 4 1304 1167 81 0 0 chr3 94243400 94243548 -65356235 + B1_Mus1 SINE Alu 1 148 0 4 1304 720 0 0 0 chr3 94243549 94243629 -65356154 + (GGA)n Simple_repeat Simple_repeat 3 82 0 4 1304 580 229 37 0 chr3 94243631 94243740 -65356043 - ID_B1 SINE B4 -19 205 93 4 1304 318 263 79 0 chr3 94243672 94243748 -65356035 - PB1D9 SINE Alu -38 82 1 4 1304 418 316 73 123 chr3 94244598 94244898 -65354885 - B4 SINE B4 -6 286 2 4 1304 4620 184 110 8 chr3 94245103 94246061 -65353722 + Lx9 LINE L1 6564 7618 -26 4 1304 496 312 153 18 chr3 94246126 94246400 -65353383 - L2a LINE L2 -876 2543 2233 4 1304 376 183 25 35 chr3 94246879 94246971 -65352812 - B1_Mur1 SINE Alu -19 130 13 4 1304 234 0 0 0 chr3 94247005 94247031 -65352752 + (A)n Simple_repeat Simple_repeat 1 26 0 4 1304 387 0 0 0 chr3 94248033 94248076 -65351707 + (TG)n Simple_repeat Simple_repeat 1 43 0 4 1304 408 40 0 0 chr3 94248076 94248125 -65351658 + (GA)n Simple_repeat Simple_repeat 1 50 0 4 1304 218 250 83 0 chr3 94248224 94248284 -65351499 - B4A SINE B4 -226 66 2 4 1304 397 197 23 69 chr3 94248993 94249124 -65350659 - B1_Mur3 SINE Alu -24 125 1 4 1304 525 332 56 10 chr3 94249535 94249730 -65350053 - ID_B1 SINE B4 -6 218 15 4 1304 985 137 0 7 chr3 94249815 94249962 -65349821 + B1_Mus2 SINE Alu 2 147 0 4 1304 559 246 15 0 chr3 94250172 94250306 -65349477 - RSINE1 SINE B4 -27 138 3 4 1304 458 79 316 9 chr3 94251281 94251395 -65348388 - B2_Mm2 SINE B2 0 195 47 4 1304 1335 74 11 6 chr3 94251425 94251602 -65348181 - B2_Mm1t SINE B2 -15 178 1 4 1304 1412 84 5 10 chr3 94252451 94252643 -65347140 + B2_Mm1a SINE B2 2 192 -1 4 1304 251 234 0 21 chr3 94252746 94252794 -65346989 + B1_Mus2 SINE Alu 2 48 -99 4 1304 382 124 292 0 chr3 94252785 94252845 -65346938 + MT2A LTR ERVL 403 467 -66 4 1304 231 114 0 0 chr3 94252845 94252880 -65346903 + (TA)n Simple_repeat Simple_repeat 1 35 0 4 1304 382 124 292 0 chr3 94252880 94252908 -65346875 + MT2A LTR ERVL 468 516 -17 4 1304 770 159 40 33 chr3 94252921 94253071 -65346712 + URR1A DNA MER1_type 54 204 -22 4 1304 1160 55 7 7 chr3 94253087 94253234 -65346549 - B1_Mus2 SINE Alu 0 147 1 4 1304 211 225 0 0 chr3 94253662 94253702 -65346081 + B3 SINE B2 2 41 -175 4 1304 1031 213 11 0 chr3 94253727 94253901 -65345882 + B3 SINE B2 27 202 -14 4 1304 346 302 94 0 chr3 94253913 94254019 -65345764 - Lx8 LINE L1 -563 6910 6795 4 1304 319 272 76 34 chr3 94254006 94254124 -65345659 + Lx8 LINE L1 6904 7026 -447 4 1304 944 115 79 17 chr3 94254131 94254308 -65345475 + RLTR31A_Mm LTR ERVK 106 293 -291 4 1304 226 300 100 0 chr3 94254329 94254409 -65345374 + Lx8 LINE L1 7021 7108 -365 4 1304 346 318 37 74 chr3 94254409 94254433 -65345350 + B4 SINE B4 69 172 -120 4 1304 626 244 8 16 chr3 94254433 94254562 -65345221 + B1_Mur1 SINE Alu 1 128 -21 4 1304 275 229 528 48 chr3 94254570 94254711 -65345072 + B3 SINE B2 1 209 -7 4 1304 923 215 16 5 chr3 94254719 94254906 -65344877 + B3 SINE B2 20 208 -8 4 1304 625 155 147 0 chr3 94254933 94255062 -65344721 - B1_Mur3 SINE Alu -1 148 1 4 1304 299 309 0 0 chr3 94255082 94255150 -65344633 + G-rich Low_complexity Low_complexity 1 68 0 4 1304 311 341 28 69 chr3 94255567 94255712 -65344071 + MER2B DNA MER2_type 1 139 -197 4 1304 365 207 115 8 chr3 94255974 94256102 -65343681 - MTD LTR MaLR -39 380 240 4 1304 233 200 41 215 chr3 94256017 94256138 -65343645 - LTR64 LTR ERV1 -323 205 106 4 1304 576 0 0 0 chr3 94256227 94256291 -65343492 + (TC)n Simple_repeat Simple_repeat 1 64 0 4 1304 213 39 0 0 chr3 94256291 94256317 -65343466 + (TG)n Simple_repeat Simple_repeat 2 27 0 4 1304 221 293 103 0 chr3 94256410 94256468 -65343315 - ID_B1 SINE B4 -77 147 84 4 1304 265 188 125 0 chr3 94256421 94256469 -65343314 - PB1D9 SINE Alu -65 55 2 4 1304 29 0 0 0 chr3 94256530 94256559 -65343224 + AT_rich Low_complexity Low_complexity 1 29 0 4 1304 545 224 69 0 chr3 94256619 94256735 -65343048 - RSINE1 SINE B4 -36 129 6 4 1304 472 277 28 35 chr3 94256752 94256894 -65342889 - ID_B1 SINE B4 -3 221 81 4 1304 556 194 0 0 chr3 94256975 94257068 -65342715 + B4A SINE B4 1 93 -199 4 1304 582 15 0 0 chr3 94258016 94258083 -65341700 + (TAGA)n Simple_repeat Simple_repeat 3 69 0 4 1304 313 241 0 0 chr3 94258083 94258137 -65341646 + B4A SINE B4 235 288 -4 4 1304 525 224 92 33 chr3 94258724 94258876 -65340907 - B3 SINE B2 -22 194 34 4 1304 208 184 0 26 chr3 94259162 94259201 -65340582 + L2c LINE L2 3266 3303 -84 4 1304 909 204 21 62 chr3 94259327 94259520 -65340263 + B3 SINE B2 1 185 -31 4 1304 285 98 0 0 chr3 94259650 94259691 -65340092 + (TCCC)n Simple_repeat Simple_repeat 1 41 0 4 1304 614 245 41 16 chr3 94260110 94260273 -65339510 + B3 SINE B2 2 175 -18 4 1304 710 188 65 0 chr3 94260273 94260411 -65339372 + B1_Mm SINE Alu 1 147 0 4 1304 367 291 93 39 chr3 94260411 94260429 -65339354 + B2_Mm1a SINE B2 176 193 0 4 1304 1123 176 152 20 chr3 94261065 94261371 -65338412 + MTD LTR MaLR 1 375 -46 4 1304 887 176 15 46 chr3 94261371 94261568 -65338215 - B2_Mm2 SINE B2 0 195 5 4 1304 1059 196 236 36 chr3 94261568 94261595 -65338188 + MTD LTR MaLR 376 401 -20 4 1304 891 139 27 27 chr3 94261595 94261743 -65338040 + B1_Mus1 SINE Alu 1 148 0 4 1304 271 175 35 3 chr3 94261799 94261866 -65337917 - ID_B1 SINE B4 -151 141 74 4 1304 2355 136 20 0 chr3 94262546 94262898 -65336885 + ORR1B2 LTR MaLR 1 359 -8 4 1304 786 195 39 13 chr3 94262905 94263061 -65336722 - B3A SINE B2 -38 160 1 4 1304 342 287 32 0 chr3 94263073 94263167 -65336616 - ID_B1 SINE B4 -12 212 116 4 1304 24 32 0 0 chr3 94263167 94263198 -65336585 + AT_rich Low_complexity Low_complexity 1 31 0 5 1304 660 240 60 66 chr3 94263544 94263727 -65336056 + B3A SINE B2 1 182 -16 5 1304 363 268 0 0 chr3 94263782 94263864 -65335919 + ID4_ SINE ID 2 83 0 5 1304 691 259 0 27 chr3 94264943 94265090 -65334693 + ID_B1 SINE B4 82 224 0 5 1304 768 109 25 8 chr3 94265100 94265220 -65334563 + B1_Mus2 SINE Alu 24 145 -2 5 1304 258 248 88 110 chr3 94265102 94265238 -65334545 + B4 SINE B4 111 243 -49 5 1304 288 0 0 0 chr3 94265555 94265587 -65334196 + (TGG)n Simple_repeat Simple_repeat 2 33 0 5 1304 686 81 13 210 chr3 94265594 94265751 -65334032 + B1_Mur3 SINE Alu 24 149 0 5 1304 1171 50 0 0 chr3 94266044 94266185 -65333598 - B1_Mus1 SINE Alu -7 141 1 5 1304 2116 164 97 22 chr3 94266190 94266602 -65333181 + MT2A LTR ERVL 6 448 -85 5 1304 423 0 0 0 chr3 94266606 94266653 -65333130 + (TG)n Simple_repeat Simple_repeat 2 48 0 5 1304 277 81 0 0 chr3 94266656 94266693 -65333090 + MT2A LTR ERVL 497 533 0 5 1304 1096 216 5 0 chr3 94266760 94266954 -65332829 + B3 SINE B2 21 215 -1 5 1304 323 208 25 49 chr3 94266970 94266989 -65332794 + L1MEg LINE L1 1857 1875 -4209 5 1304 1281 34 0 0 chr3 94266989 94267135 -65332648 + B1_Mm SINE Alu 1 146 -1 5 1304 323 208 25 49 chr3 94267135 94267196 -65332587 + L1MEg LINE L1 1876 1935 -4149 5 1304 622 254 63 26 chr3 94267424 94267614 -65332169 - B3A SINE B2 0 198 2 5 1304 180 111 0 0 chr3 94267616 94267643 -65332140 + (TTTG)n Simple_repeat Simple_repeat 4 30 0 5 1304 1025 245 35 101 chr3 94267676 94267962 -65331821 - B4 SINE B4 -18 274 8 5 1304 268 203 169 0 chr3 94268080 94268139 -65331644 + PB1D7 SINE Alu 44 112 -8 5 1304 291 28 0 0 chr3 94268393 94268429 -65331354 + (CA)n Simple_repeat Simple_repeat 1 36 0 5 1304 774 55 5 4 chr3 94269044 94269155 -65330628 + B1_Mus2 SINE Alu 38 149 0 5 1304 271 89 36 0 chr3 94269195 94269251 -65330532 + (CAAA)n Simple_repeat Simple_repeat 2 59 0 5 1304 566 268 0 140 chr3 94270351 94270529 -65329254 + MER5B DNA MER1_type 25 177 -1 5 1304 322 57 0 36 chr3 94270868 94270923 -65328860 + (GGA)n Simple_repeat Simple_repeat 3 55 0 5 1304 508 129 12 12 chr3 94271076 94271162 -65328621 + PB1D9 SINE Alu 35 120 0 5 1304 1048 76 0 52 chr3 94271620 94271773 -65328010 + B1_Mus2 SINE Alu 3 147 0 5 1304 765 125 0 0 chr3 94271773 94271893 -65327890 + (GAAA)n Simple_repeat Simple_repeat 4 123 0 5 1304 217 65 0 151 chr3 94273045 94273118 -65326665 + GA-rich Low_complexity Low_complexity 3 64 0 5 1304 797 197 13 13 chr3 94273515 94273664 -65326119 - B1_Mur1 SINE Alu 0 149 1 5 1304 1025 224 29 0 chr3 94274034 94274244 -65325539 - B3 SINE B2 0 216 1 5 1304 899 153 22 0 chr3 94274273 94274410 -65325373 + B1_Mur1 SINE Alu 1 140 -9 5 1304 750 129 43 0 chr3 94274745 94274861 -65324922 - B1_Mur1 SINE Alu -5 144 24 5 1304 382 294 21 49 chr3 94274986 94275113 -65324670 - PB1D10 SINE Alu -20 128 3 5 1304 425 192 113 19 chr3 94275153 94275259 -65324524 - PB1D10 SINE Alu -1 116 1 5 1304 21 0 0 0 chr3 94275522 94275543 -65324240 + AT_rich Low_complexity Low_complexity 1 21 0 5 1304 412 260 0 80 chr3 94275573 94275686 -65324097 + ID_B1 SINE B4 115 218 -6 5 1304 283 203 34 0 chr3 94275716 94275775 -65324008 - PB1D7 SINE Alu -8 112 52 5 1304 1357 71 39 0 chr3 94275797 94275979 -65323804 + B2_Mm1t SINE B2 2 190 -3 5 1304 572 250 143 5 chr3 94276328 94276517 -65323266 - ID_B1 SINE B4 -1 223 9 5 1304 441 0 0 0 chr3 94277593 94277642 -65322141 + (CA)n Simple_repeat Simple_repeat 2 50 0 5 1304 523 232 99 7 chr3 94278132 94278284 -65321499 + MER33 DNA MER1_type 49 214 -110 5 1304 401 298 116 27 chr3 94278329 94278553 -65321230 - B4A SINE B4 0 292 49 5 1304 682 220 23 30 chr3 94278584 94278715 -65321068 - B1_Mur1 SINE Alu -10 139 10 5 1304 359 314 85 28 chr3 94278753 94278768 -65321015 + B1_Mur4 SINE Alu 1 149 -1 5 1304 587 232 48 8 chr3 94278768 94278894 -65320889 + ID_B1 SINE B4 93 223 -1 5 1304 785 173 8 8 chr3 94278923 94279057 -65320726 + B1F2 SINE Alu 15 148 -1 5 1304 358 277 58 39 chr3 94279071 94279225 -65320558 + RSINE1 SINE B4 5 161 -4 5 1304 1011 156 0 0 chr3 94279248 94279427 -65320356 + GA-rich Low_complexity Low_complexity 1 179 0 5 1304 708 139 43 0 chr3 94279473 94279588 -65320195 - B1_Mur2 SINE Alu -20 129 10 5 1304 390 196 30 89 chr3 94279499 94279600 -65320183 - MT2B LTR ERVL -345 256 162 5 1304 1113 198 20 0 chr3 94279601 94279803 -65319980 - B3 SINE B2 -10 206 1 5 1304 346 269 40 7 chr3 94280794 94280929 -65318854 + MIR SINE MIR 18 158 -50 5 1304 198 0 0 0 chr3 94281255 94281277 -65318506 + (T)n Simple_repeat Simple_repeat 1 22 0 5 1304 230 213 0 78 chr3 94281431 94281482 -65318301 - MIRm SINE MIR -15 261 215 5 1304 220 250 0 0 chr3 94282203 94282251 -65317532 + G-rich Low_complexity Low_complexity 1 48 0 5 1304 186 43 0 0 chr3 94287036 94287059 -65312724 + (CG)n Simple_repeat Simple_repeat 1 23 0 5 1304 243 0 0 0 chr3 94287059 94287085 -65312698 + (CA)n Simple_repeat Simple_repeat 1 27 0 5 1304 330 285 129 15 chr3 94290171 94290303 -65309480 - L1MEc LINE L1 -5172 1228 1082 5 1304 510 143 99 0 chr3 94291393 94291484 -65308299 - PB1D9 SINE Alu -3 117 18 5 1304 256 239 105 74 chr3 94291414 94291509 -65308274 - MT2B LTR ERVL -354 247 150 5 1304 360 64 0 0 chr3 94292146 94292193 -65307590 + (CAG)n Simple_repeat Simple_repeat 1 47 0 5 1304 226 246 45 30 chr3 94292815 94292882 -65306901 + ID4_ SINE ID 1 68 -15 5 1304 477 0 0 0 chr3 94292885 94292938 -65306845 + (TC)n Simple_repeat Simple_repeat 1 53 0 5 1304 441 0 0 0 chr3 94292938 94292986 -65306797 + (CA)n Simple_repeat Simple_repeat 1 49 0 5 1304 254 220 33 33 chr3 94293234 94293295 -65306488 - L2a LINE L2 -10 3416 3356 5 1304 387 0 0 0 chr3 94293734 94293777 -65306006 + (CA)n Simple_repeat Simple_repeat 2 44 0 5 1304 241 348 102 15 chr3 94296450 94296587 -65303196 - MIRb SINE MIR -83 185 37 5 1304 229 294 0 0 chr3 94296798 94296849 -65302934 + ID4 SINE ID 5 55 -28 5 1304 385 258 83 0 chr3 94297023 94297143 -65302640 + PB1D10 SINE Alu 5 134 -15 5 1304 297 236 167 11 chr3 94297276 94297366 -65302417 - MTEa LTR MaLR -200 179 76 5 1304 708 163 73 7 chr3 94298061 94298197 -65301586 - B1_Mus2 SINE Alu 0 147 3 5 1304 283 286 26 0 chr3 94298286 94298363 -65301420 - ID_B1 SINE B4 -64 160 82 5 1304 321 311 14 0 chr3 94298613 94298687 -65301096 + B3A SINE B2 1 75 -123 5 1304 522 136 306 48 chr3 94298750 94298897 -65300886 + B3 SINE B2 5 189 -27 5 1304 745 224 0 0 chr3 94299045 94299192 -65300591 - B1_Mus2 SINE Alu 0 147 1 5 1304 713 226 56 26 chr3 94299200 94299395 -65300388 - B3 SINE B2 -11 205 5 5 1304 554 142 94 0 chr3 94299420 94299526 -65300257 - B1_Mus1 SINE Alu 0 148 33 5 1304 339 277 72 0 chr3 94299871 94299954 -65299829 + RSINE1 SINE B4 76 164 -1 5 1304 766 212 40 14 chr3 94300233 94300381 -65299402 - RSINE1 SINE B4 -6 159 8 5 1304 641 212 59 29 chr3 94300392 94300528 -65299255 - ID_B1 SINE B4 -8 216 77 5 1304 818 268 69 41 chr3 94303638 94303856 -65295927 - ID_B1 SINE B4 0 224 1 5 1304 259 229 29 0 chr3 94304721 94304791 -65294992 + (TA)n Simple_repeat Simple_repeat 2 73 0 5 1304 261 297 161 15 chr3 94305365 94305495 -65294288 - MIRm SINE MIR -114 162 14 5 1304 204 125 0 0 chr3 94305767 94305799 -65293984 + (CAA)n Simple_repeat Simple_repeat 2 33 0 5 1304 710 174 75 8 chr3 94306475 94306608 -65293175 + B1_Mur1 SINE Alu 5 146 -3 5 1304 547 214 54 48 chr3 94307020 94307167 -65292616 + RSINE1 SINE B4 4 151 -14 5 1304 257 75 25 0 chr3 94307172 94307212 -65292571 + (CA)n Simple_repeat Simple_repeat 2 42 0 5 1304 981 233 72 96 chr3 94308127 94308560 -65291223 + MTE2a LTR MaLR 1 401 -18 5 1304 888 168 51 51 chr3 94308571 94308629 -65291154 - B2_Mm2 SINE B2 0 195 146 5 1304 345 47 0 0 chr3 94308629 94308672 -65291111 + (TG)n Simple_repeat Simple_repeat 2 44 0 5 1304 888 168 51 51 chr3 94308672 94308808 -65290975 - B2_Mm2 SINE B2 -50 145 1 5 1304 417 39 0 0 chr3 94309222 94309273 -65290510 + (GAAA)n Simple_repeat Simple_repeat 2 52 0 5 1304 3288 48 8 0 chr3 94309791 94310184 -65289599 + MTA_Mm LTR MaLR 1 396 0 5 1304 21 0 0 0 chr3 94310240 94310261 -65289522 + AT_rich Low_complexity Low_complexity 1 21 0 5 1304 186 283 0 62 chr3 94310269 94310333 -65289450 + MIRb SINE MIR 204 263 -5 5 1304 970 128 0 28 chr3 94310339 94310484 -65289299 - B1_Mur3 SINE Alu 0 149 9 5 1304 874 204 43 24 chr3 94310678 94310889 -65288894 + B3 SINE B2 1 215 -1 5 1304 330 273 26 0 chr3 94310901 94310978 -65288805 + ID4_ SINE ID 2 80 -3 5 1304 273 29 0 0 chr3 94310989 94311023 -65288760 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 5 1304 419 278 45 27 chr3 94311444 94311555 -65288228 - B1F2 SINE Alu -13 136 24 5 1304 610 234 398 23 chr3 94311829 94312085 -65287698 + ORR1E LTR MaLR 1 352 -27 5 1304 268 314 98 0 chr3 94312487 94312589 -65287194 + PB1D10 SINE Alu 1 112 -5 5 1304 793 175 157 11 chr3 94312754 94312939 -65286844 - B3 SINE B2 0 216 5 6 1304 314 176 0 50 chr3 94312961 94313021 -65286762 - B1F1 SINE Alu 0 149 93 6 1304 422 265 43 50 chr3 94313385 94313524 -65286259 - B1F SINE Alu -10 139 2 6 1304 685 256 99 0 chr3 94313823 94313995 -65285788 + MER3 DNA MER1_type 1 189 -20 6 1304 535 321 0 0 chr3 94314139 94314270 -65285513 + B1F SINE Alu 1 131 -18 6 1304 822 180 146 11 chr3 94314394 94314579 -65285204 - B3 SINE B2 -5 211 2 6 1304 26 64 0 0 chr3 94314730 94314777 -65285006 + AT_rich Low_complexity Low_complexity 1 47 0 6 1304 279 54 0 0 chr3 94315551 94315588 -65284195 + (CA)n Simple_repeat Simple_repeat 1 37 0 6 1304 330 258 104 22 chr3 94315675 94315810 -65283973 - PB1D10 SINE Alu -3 146 1 6 1304 315 321 44 22 chr3 94315810 94315887 -65283896 - ID SINE ID -142 82 3 6 1304 385 174 0 14 chr3 94316084 94316154 -65283629 - ID4_ SINE ID -13 70 2 6 1304 433 200 58 29 chr3 94316167 94316270 -65283513 - PB1D10 SINE Alu 0 117 12 6 1304 695 269 97 0 chr3 94316354 94316540 -65283243 + B3 SINE B2 3 206 -10 6 1304 495 117 359 0 chr3 94316734 94316837 -65282946 - B1_Mur4 SINE Alu -1 149 10 6 1304 492 214 127 19 chr3 94317123 94317280 -65282503 + MER104 DNA Tc2 4 177 -4 6 1304 564 253 6 62 chr3 94317491 94317651 -65282132 + B4A SINE B4 142 292 0 6 1304 377 253 131 8 chr3 94317688 94317833 -65281950 + L1MB2 LINE L1 5596 5757 -417 6 1304 329 274 79 24 chr3 94317865 94317992 -65281791 + L1MB2 LINE L1 5968 6101 -70 6 1304 475 283 0 0 chr3 94318003 94318102 -65281681 + ID_B1 SINE B4 110 208 -16 6 1304 466 86 57 0 chr3 94318392 94318462 -65281321 + MT2A LTR ERVL 1 74 -459 6 1304 495 261 29 35 chr3 94318462 94318633 -65281150 + MT2A LTR ERVL 364 533 0 6 1304 545 196 44 9 chr3 94318704 94318817 -65280966 - PB1D9 SINE Alu -1 119 3 6 1304 567 194 351 19 chr3 94318817 94319073 -65280710 + MERVL_2A-int LTR ERVL 39 377 -5384 6 1304 600 123 211 8 chr3 94319119 94319242 -65280541 + URR1B DNA MER1_type 78 225 0 6 1304 7044 185 95 83 chr3 94319242 94320217 -65279566 + MERVL_2A-int LTR ERVL 449 1425 -4336 6 1304 1202 75 0 0 chr3 94320217 94320364 -65279419 - B1_Mus2 SINE Alu 0 147 1 6 1304 7044 185 95 83 chr3 94320364 94320670 -65279113 + MERVL_2A-int LTR ERVL 1426 1739 -4022 6 1304 267 45 0 22 chr3 94320670 94320716 -65279067 - L1Md_T LINE L1 0 6582 6538 6 1304 7044 185 95 83 chr3 94320716 94320777 -65279006 + MERVL_2A-int LTR ERVL 1740 1803 -3958 6 1304 1160 48 0 33 chr3 94320777 94320918 -65278865 + B1_Mus2 SINE Alu 2 138 -9 6 1304 315 0 0 0 chr3 94320918 94320953 -65278830 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 6 1304 7044 185 95 83 chr3 94320962 94321295 -65278488 + MERVL_2A-int LTR ERVL 1804 2192 -3569 6 1304 638 275 64 6 chr3 94321315 94321487 -65278296 + B4 SINE B4 99 280 -12 6 1304 264 30 0 0 chr3 94321745 94321778 -65278005 + (CA)n Simple_repeat Simple_repeat 2 34 0 6 1304 803 291 48 72 chr3 94321790 94322082 -65277701 + B4A SINE B4 8 292 0 6 1304 248 161 16 0 chr3 94322105 94322167 -65277616 + (CA)n Simple_repeat Simple_repeat 1 63 0 6 1304 811 301 112 42 chr3 94322317 94322719 -65277064 + MER21B LTR ERV1 423 852 -11 6 1304 255 210 113 0 chr3 94323637 94323699 -65276084 - ID_B1 SINE B4 -75 149 81 6 1304 240 35 0 0 chr3 94324683 94324712 -65275071 + (TG)n Simple_repeat Simple_repeat 2 30 0 6 1304 256 256 54 75 chr3 94324712 94324724 -65275059 - B4A SINE B4 -201 91 1 6 1304 436 185 25 0 chr3 94324724 94324805 -65274978 - B3 SINE B2 -133 83 1 6 1304 263 270 31 16 chr3 94324823 94324887 -65274896 - PB1 SINE Alu -3 124 60 6 1304 434 273 64 59 chr3 94325806 94326056 -65273727 + L1MC5 LINE L1 6702 7038 -1004 6 1304 259 268 11 11 chr3 94326496 94326583 -65273200 + L1MC5 LINE L1 7303 7389 -572 6 1304 807 306 21 18 chr3 94327057 94327343 -65272440 + B4A SINE B4 2 288 -4 6 1304 401 258 107 128 chr3 94327452 94327750 -65272033 + B4A SINE B4 1 292 0 6 1304 286 406 10 0 chr3 94327863 94327964 -65271819 - PB1D10 SINE Alu -15 102 1 6 1304 1045 59 74 0 chr3 94328721 94328856 -65270927 + B1_Mm SINE Alu 1 145 -2 6 1304 258 32 0 0 chr3 94328856 94328887 -65270896 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 6 1304 238 314 4 11 chr3 94328901 94328981 -65270802 + ID4 SINE ID 2 79 -4 6 1304 447 247 237 17 chr3 94329053 94329230 -65270553 - B3 SINE B2 0 216 1 6 1304 418 258 0 77 chr3 94329274 94329404 -65270379 - PB1D7 SINE Alu 0 120 1 6 1304 308 300 0 0 chr3 94329529 94329599 -65270184 - Tigger7 DNA MER2_type -6 2485 2416 6 1304 1692 308 100 11 chr3 94329610 94330161 -65269622 - Tigger7 DNA MER2_type -1890 601 2 6 1304 232 271 77 86 chr3 94330260 94330377 -65269406 - MIRm SINE MIR 0 276 161 6 1304 471 273 17 52 chr3 94330858 94330974 -65268809 + RSINE1 SINE B4 4 115 -50 6 1304 235 291 41 71 chr3 94330865 94331035 -65268748 + B2_Mm2 SINE B2 11 175 -20 6 1304 265 214 0 54 chr3 94331126 94331200 -65268583 - L2 LINE L2 -461 2958 2889 6 1304 1263 77 53 0 chr3 94331294 94331463 -65268320 + B2_Mm1t SINE B2 2 179 -14 6 1304 352 149 181 0 chr3 94331511 94331616 -65268167 + B2_Mm2 SINE B2 47 192 -1 6 1304 412 239 0 23 chr3 94331679 94331812 -65267971 + GA-rich Low_complexity Low_complexity 4 133 0 6 1304 248 311 0 100 chr3 94332962 94333062 -65266721 + MT2B2 LTR ERVL 150 239 -345 6 1304 571 313 0 29 chr3 94332988 94333126 -65266657 + B1F SINE Alu 15 148 -1 6 1304 716 189 29 7 chr3 94333129 94333268 -65266515 + B1_Mur4 SINE Alu 1 142 -8 6 1304 1564 200 49 80 chr3 94333801 94334187 -65265596 + ORR1D1 LTR MaLR 1 374 0 6 1304 189 0 0 0 chr3 94334770 94334791 -65264992 + (T)n Simple_repeat Simple_repeat 1 21 0 6 1304 1173 82 0 0 chr3 94334791 94334938 -65264845 - B1_Mus1 SINE Alu 0 148 2 6 1304 255 186 0 0 chr3 94335057 94335100 -65264683 - RSINE1 SINE B4 -105 60 18 6 1304 359 270 117 0 chr3 94335684 94335795 -65263988 - RSINE1 SINE B4 -39 126 3 6 1304 341 257 19 29 chr3 94335809 94335913 -65263870 - L1M5 LINE L1 -469 5771 5669 6 1304 635 234 187 0 chr3 94336032 94336203 -65263580 + ID_B1 SINE B4 1 203 -21 6 1304 333 125 42 0 chr3 94336325 94336397 -65263386 - MTC-int LTR MaLR -64 1194 1120 6 1304 440 168 3 93 chr3 94336397 94336523 -65263260 + B1_Mus2 SINE Alu 1 147 0 6 1304 817 146 65 7 chr3 94336671 94336809 -65262974 - B1_Mus2 SINE Alu 0 147 2 6 1304 308 196 18 0 chr3 94336905 94336961 -65262822 - PB1 SINE Alu -19 108 52 6 1304 415 220 62 35 chr3 94337017 94337130 -65262653 - PB1D10 SINE Alu 0 117 2 6 1304 240 309 37 0 chr3 94337276 94337357 -65262426 - B1F SINE Alu -36 113 30 6 1304 237 300 21 43 chr3 94337532 94337626 -65262157 + PB1D7 SINE Alu 25 116 -4 6 1304 227 29 0 54 chr3 94338227 94338264 -65261519 + (CAAAAA)n Simple_repeat Simple_repeat 3 37 0 6 1304 806 134 15 22 chr3 94338345 94338482 -65261301 + B1_Mur4 SINE Alu 6 141 -9 6 1304 186 43 0 0 chr3 94338482 94338505 -65261278 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 6 1304 336 229 0 0 chr3 94338533 94338603 -65261180 + ID4 SINE ID 4 73 -10 6 1304 316 248 0 118 chr3 94338624 94338640 -65261143 + MT2B LTR ERVL 153 154 -447 6 1304 648 200 8 19 chr3 94338640 94338791 -65260992 + B1_Mur2 SINE Alu 2 136 -13 6 1304 1458 73 16 0 chr3 94338821 94339012 -65260771 + B2_Mm2 SINE B2 1 194 -1 6 1304 964 208 66 0 chr3 94339373 94339570 -65260213 + B3 SINE B2 1 210 -6 6 1304 298 292 104 12 chr3 94339622 94339785 -65259998 + L1MEc LINE L1 1435 1612 -4803 6 1304 627 201 23 70 chr3 94339833 94340004 -65259779 - RSINE1 SINE B4 0 165 3 6 1304 414 134 0 0 chr3 94340025 94340092 -65259691 + (TC)n Simple_repeat Simple_repeat 1 67 0 6 1304 1142 77 0 0 chr3 94340092 94340235 -65259548 - B1_Mus2 SINE Alu 0 147 5 6 1304 23 0 0 0 chr3 94340253 94340276 -65259507 + AT_rich Low_complexity Low_complexity 1 23 0 6 1304 342 208 0 77 chr3 94340330 94340408 -65259375 + B1_Mur4 SINE Alu 12 83 -67 6 1304 235 242 96 87 chr3 94340373 94340477 -65259306 - B1_Mus1 SINE Alu -12 136 32 6 1304 259 259 21 96 chr3 94340408 94340424 -65259359 + B4 SINE B4 96 182 -110 6 1304 662 210 14 5 chr3 94340513 94340659 -65259124 - B1F SINE Alu 0 149 12 6 1304 451 255 70 57 chr3 94340689 94340847 -65258936 + ID_B1 SINE B4 5 164 -60 6 1304 402 260 88 74 chr3 94340883 94341099 -65258684 + L1MEc LINE L1 1713 1931 -4469 6 1304 668 192 14 20 chr3 94341104 94341234 -65258549 + B1_Mur2 SINE Alu 1 148 -1 6 1304 517 259 22 22 chr3 94341258 94341392 -65258391 + RSINE1 SINE B4 3 136 -29 6 1304 23 54 0 0 chr3 94341442 94341479 -65258304 + AT_rich Low_complexity Low_complexity 1 37 0 6 1304 1423 75 27 0 chr3 94341486 94341674 -65258109 + B2_Mm2 SINE B2 2 194 -1 6 1304 1062 90 0 33 chr3 94341684 94341834 -65257949 + B1_Mm SINE Alu 1 145 -2 6 1304 1391 57 11 6 chr3 94342066 94342242 -65257541 + B2_Mm2 SINE B2 1 177 -18 6 1304 22 0 0 0 chr3 94342381 94342403 -65257380 + AT_rich Low_complexity Low_complexity 1 22 0 6 1304 196 227 0 22 chr3 94342434 94342524 -65257259 + GA-rich Low_complexity Low_complexity 2 89 0 6 1304 253 311 76 5 chr3 94342622 94342806 -65256977 + L1MEc LINE L1 2226 2422 -3993 6 1304 583 213 90 56 chr3 94342806 94342950 -65256833 + B1_Mur2 SINE Alu 1 149 0 6 1304 516 72 0 0 chr3 94342955 94343024 -65256759 + (GGGA)n Simple_repeat Simple_repeat 4 72 0 6 1304 245 263 205 26 chr3 94343040 94343196 -65256587 + L1MEc LINE L1 2416 2599 -3720 6 1304 603 256 95 109 chr3 94343418 94343830 -65255953 + MTD LTR MaLR 14 419 0 6 1304 628 130 57 8 chr3 94343831 94343955 -65255828 + MTD-int LTR MaLR 3 132 -1126 6 1304 618 148 0 9 chr3 94343976 94344092 -65255691 - BC1_Mm scRNA scRNA -37 115 1 7 1304 599 267 46 33 chr3 94344086 94344326 -65255457 + MTD-int LTR MaLR 967 1209 -49 6 1304 1057 111 0 0 chr3 94344339 94344483 -65255300 + B1_Mur4 SINE Alu 5 148 -2 7 1304 243 239 0 0 chr3 94344487 94344533 -65255250 + polypurine Low_complexity Low_complexity 3 48 0 7 1304 1362 220 131 8 chr3 94344589 94344955 -65254828 + MTD LTR MaLR 1 411 -8 7 1304 391 268 10 10 chr3 94345055 94345153 -65254630 + PB1 SINE Alu 11 108 -19 7 1304 1497 58 11 0 chr3 94345328 94345518 -65254265 + B2_Mm1a SINE B2 2 193 0 7 1304 500 276 81 0 chr3 94345696 94345819 -65253964 + ID_B1 SINE B4 83 215 -9 7 1304 412 301 197 17 chr3 94345832 94346067 -65253716 + B4A SINE B4 15 291 -1 7 1304 224 242 14 14 chr3 94346073 94346225 -65253558 + (CATA)n Simple_repeat Simple_repeat 1 152 0 7 1304 491 298 50 20 chr3 94346267 94346469 -65253314 + L1MEf LINE L1 564 771 -5429 7 1304 719 227 80 9 chr3 94346850 94347022 -65252761 + B3A SINE B2 1 182 -13 7 1304 336 186 398 10 chr3 94347036 94347139 -65252644 + B1_Mur1 SINE Alu 5 147 -2 7 1304 2615 184 95 6 chr3 94347198 94347267 -65252516 + RLTR17 LTR ERVK 98 194 -498 7 1304 530 29 0 14 chr3 94347267 94347336 -65252447 + (GGGA)n Simple_repeat Simple_repeat 2 69 0 7 1304 2615 184 95 6 chr3 94347336 94347812 -65251971 + RLTR17 LTR ERVK 195 691 -1 7 1304 230 313 168 0 chr3 94347866 94347997 -65251786 + L1M2 LINE L1 653 805 -6404 7 1304 327 273 34 57 chr3 94348613 94348788 -65250995 + L1M2 LINE L1 1785 1955 -5254 7 1304 482 211 9 19 chr3 94348879 94348985 -65250798 + B3 SINE B2 112 216 0 7 1304 227 103 26 0 chr3 94348987 94349026 -65250757 + (GGAA)n Simple_repeat Simple_repeat 3 42 0 7 1304 386 304 59 7 chr3 94349163 94349299 -65250484 + ID_B1 SINE B4 82 224 0 7 1304 976 114 0 7 chr3 94349301 94349442 -65250341 + B1_Mus1 SINE Alu 1 140 -8 7 1304 207 204 0 0 chr3 94349442 94349486 -65250297 + (CA)n Simple_repeat Simple_repeat 1 44 0 7 1304 635 261 138 58 chr3 94349629 94350007 -65249776 + L1M2 LINE L1 2705 3112 -4097 7 1304 1102 119 23 0 chr3 94350007 94350183 -65249600 + B2_Mm2 SINE B2 9 188 -7 7 1304 913 271 108 35 chr3 94350183 94350852 -65248931 + L1M2 LINE L1 3141 3859 -3346 7 1304 330 143 0 0 chr3 94350852 94350929 -65248854 + (TC)n Simple_repeat Simple_repeat 2 78 0 7 1304 399 83 0 0 chr3 94350929 94350989 -65248794 + (CA)n Simple_repeat Simple_repeat 1 60 0 7 1304 913 151 0 14 chr3 94351093 94351241 -65248542 - B1_Mus1 SINE Alu -2 146 1 7 1304 3141 269 41 10 chr3 94351265 94352086 -65247697 + Lx8 LINE L1 6266 7112 -361 7 1304 1281 56 17 0 chr3 94352317 94352495 -65247288 + B2_Mm2 SINE B2 15 195 0 7 1304 418 252 95 61 chr3 94352545 94352693 -65247090 + RSINE1 SINE B4 12 164 -1 7 1304 247 279 211 59 chr3 94352706 94352729 -65247054 + L1M2 LINE L1 3660 3687 -2459 7 1304 1262 27 0 0 chr3 94352729 94352876 -65246907 + B1_Mus2 SINE Alu 1 147 0 7 1304 744 243 105 69 chr3 94352876 94353244 -65246539 + L1M2 LINE L1 3688 4108 -2035 7 1304 323 200 67 0 chr3 94353246 94353321 -65246462 + L1MA5 LINE L1 6213 6292 -8 7 1304 36124 36 1 0 chr3 94353498 94359290 -65240493 + L1Md_Gf LINE L1 1 5589 -297 7 1304 9178 5 0 0 chr3 94359290 94360286 -65239497 + L1Md_T LINE L1 5587 6582 0 7 1304 440 92 0 0 chr3 94360376 94360441 -65239342 - B1_Mus2 SINE Alu -6 141 77 7 1304 513 161 105 35 chr3 94360480 94360612 -65239171 + MT2A LTR ERVL 115 236 -297 7 1304 201 39 0 0 chr3 94360672 94360698 -65239085 + (TG)n Simple_repeat Simple_repeat 2 27 0 7 1304 2028 165 44 8 chr3 94360698 94361064 -65238719 + ORR1B1 LTR MaLR 9 387 -7 7 1304 390 21 0 0 chr3 94361068 94361115 -65238668 + (CA)n Simple_repeat Simple_repeat 2 48 0 7 1304 1099 65 26 0 chr3 94361119 94361272 -65238511 + B2_Mm2 SINE B2 2 158 -37 7 1304 207 0 0 0 chr3 94361273 94361296 -65238487 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 7 1304 226 150 0 0 chr3 94361307 94361347 -65238436 + MT2A LTR ERVL 492 531 -2 7 1304 392 302 84 5 chr3 94361353 94361695 -65238088 + L1MB5 LINE L1 5787 6155 -23 7 1304 393 295 3 2 chr3 94361787 94361896 -65237887 + PB1D10 SINE Alu 6 115 -34 7 1304 3497 28 2 0 chr3 94361927 94362322 -65237461 + MTA_Mm LTR MaLR 1 396 0 7 1304 317 286 91 22 chr3 94362342 94362658 -65237125 + L1ME1 LINE L1 5127 5466 -978 7 1304 337 212 226 86 chr3 94362666 94362852 -65236931 + B3 SINE B2 1 212 -4 7 1304 262 228 0 0 chr3 94362955 94363012 -65236771 + PB1D10 SINE Alu 46 102 -15 7 1304 243 242 104 10 chr3 94363035 94363131 -65236652 + L1ME1 LINE L1 5488 5592 -572 7 1304 709 244 53 19 chr3 94363146 94363355 -65236428 - ID_B1 SINE B4 -7 217 2 7 1304 334 249 288 18 chr3 94363412 94363638 -65236145 - B4A SINE B4 -4 288 2 7 1304 682 215 46 13 chr3 94363662 94363813 -65235970 + RSINE1 SINE B4 3 158 -7 7 1304 809 246 153 79 chr3 94363957 94364297 -65235486 + MTEb LTR MaLR 6 370 -9 7 1304 254 274 152 22 chr3 94364334 94364472 -65235311 + L1ME1 LINE L1 5938 6093 -86 7 1304 261 338 12 0 chr3 94364838 94364918 -65234865 - ID4_ SINE ID -1 82 2 7 1304 644 250 139 6 chr3 94366372 94366545 -65233238 - B3A SINE B2 -2 196 1 7 1304 977 163 197 0 chr3 94366770 94366948 -65232835 + B3 SINE B2 1 213 -3 7 1304 23 33 0 0 chr3 94366948 94366978 -65232805 + AT_rich Low_complexity Low_complexity 1 30 0 7 1304 207 69 0 0 chr3 94368339 94368368 -65231415 + (TTTTTG)n Simple_repeat Simple_repeat 1 29 0 7 1304 1288 111 16 21 chr3 94368381 94368575 -65231208 + B2_Mm2 SINE B2 3 195 0 7 1304 298 255 97 97 chr3 94368825 94368990 -65230793 + Charlie4z DNA MER1_type 50 167 0 7 1304 531 252 64 7 chr3 94369063 94369203 -65230580 + B1_Mur1 SINE Alu 1 148 -1 7 1304 354 272 12 0 chr3 94369355 94369436 -65230347 + ID4_ SINE ID 2 83 0 7 1304 216 0 0 0 chr3 94369449 94369473 -65230310 + (A)n Simple_repeat Simple_repeat 1 24 0 7 1304 375 294 158 0 chr3 94369703 94369849 -65229934 + B3A SINE B2 3 171 -27 7 1304 474 18 0 0 chr3 94369860 94369915 -65229868 + (CA)n Simple_repeat Simple_repeat 1 55 0 7 1304 264 348 54 63 chr3 94370111 94370332 -65229451 + MIR SINE MIR 21 239 -23 7 1304 520 232 45 55 chr3 94370638 94370830 -65228953 + B3A SINE B2 1 203 -13 7 1304 326 234 26 0 chr3 94370868 94370945 -65228838 + L1ME2z LINE L1 6356 6434 -10 7 1304 374 307 15 73 chr3 94371520 94371657 -65228126 + B4A SINE B4 11 139 -153 7 1304 278 50 25 0 chr3 94371662 94371702 -65228081 + (TTTA)n Simple_repeat Simple_repeat 3 43 0 7 1304 407 237 2 18 chr3 94371720 94371825 -65227958 + B4 SINE B4 8 109 -183 7 20 292 228 0 124 chr3 94371831 94371936 -65227847 + MT2B LTR ERVL 168 259 -342 7 1305 571 269 0 0 chr3 94371845 94371964 -65227819 + B1_Mur1 SINE Alu 16 134 -15 7 1305 279 0 0 0 chr3 94371984 94372015 -65227768 + (TAGA)n Simple_repeat Simple_repeat 2 32 0 7 1305 438 69 0 0 chr3 94372016 94372074 -65227709 + (CAGG)n Simple_repeat Simple_repeat 2 59 0 7 1305 411 313 0 44 chr3 94372080 94372217 -65227566 + B4A SINE B4 88 218 -74 7 1305 513 0 0 0 chr3 94372232 94372289 -65227494 + (TG)n Simple_repeat Simple_repeat 1 57 0 7 1305 609 274 66 33 chr3 94372295 94372537 -65227246 - B4A SINE B4 0 292 43 7 1305 218 317 0 0 chr3 94372610 94372670 -65227113 + (CA)n Simple_repeat Simple_repeat 2 61 0 7 1305 192 40 0 0 chr3 94372798 94372823 -65226960 + (TTTTA)n Simple_repeat Simple_repeat 5 29 0 7 1305 1177 58 0 0 chr3 94372823 94372977 -65226806 - B2_Mm2 SINE B2 -40 155 2 7 1305 744 156 42 14 chr3 94373019 94373162 -65226621 + B1_Mur4 SINE Alu 2 148 -2 7 1305 454 231 51 8 chr3 94373208 94373326 -65226457 + B1F SINE Alu 27 149 0 7 1305 381 263 164 30 chr3 94373326 94373557 -65226226 + L1MC LINE L1 5033 5294 -852 7 1305 575 280 8 0 chr3 94373592 94373724 -65226059 - RSINE1 SINE B4 -31 134 2 7 1305 703 229 116 25 chr3 94373724 94373966 -65225817 + L1MC LINE L1 5306 5569 -775 7 1305 1175 228 103 20 chr3 94373969 94374318 -65225465 + ORR1C2 LTR MaLR 1 378 -6 7 1305 579 241 178 9 chr3 94374318 94374532 -65225251 + L1MC LINE L1 5568 5817 -1968 7 1305 324 294 12 0 chr3 94374532 94374617 -65225166 + B3 SINE B2 7 92 -124 7 1305 255 31 0 0 chr3 94374777 94374809 -65224974 + (TG)n Simple_repeat Simple_repeat 2 33 0 7 1305 253 303 99 18 chr3 94374810 94374921 -65224862 - B3A SINE B2 -77 121 2 7 1305 902 186 101 25 chr3 94374932 94375131 -65224652 - B3 SINE B2 0 216 3 7 1305 768 207 27 7 chr3 94375157 94375303 -65224480 + B1_Mur3 SINE Alu 1 149 0 7 1305 1022 108 127 0 chr3 94375724 94375882 -65223901 + B2_Mm1t SINE B2 2 179 -14 7 1305 270 0 0 0 chr3 94375939 94375969 -65223814 + (G)n Simple_repeat Simple_repeat 1 30 0 7 1305 348 102 330 18 chr3 94375984 94376093 -65223690 + B2_Mm2 SINE B2 47 189 -6 7 1305 772 208 0 7 chr3 94376259 94376404 -65223379 - B1_Mur3 SINE Alu -1 148 5 7 1305 660 89 0 0 chr3 94376416 94376517 -65223266 + (TG)n Simple_repeat Simple_repeat 2 102 0 7 1305 1124 57 43 0 chr3 94376581 94376722 -65223061 + B1_Mm SINE Alu 1 147 0 7 1305 21 0 0 0 chr3 94376727 94376748 -65223035 + AT_rich Low_complexity Low_complexity 1 21 0 7 1305 537 175 10 20 chr3 94376749 94376848 -65222935 - B3A SINE B2 -99 99 2 7 1305 323 281 45 0 chr3 94377473 94377562 -65222221 + PB1D10 SINE Alu 3 95 -22 7 1305 601 106 26 6 chr3 94377650 94377756 -65222027 + B1_Mur4 SINE Alu 1 144 -6 7 1305 229 194 0 162 chr3 94377689 94377769 -65222014 + B4 SINE B4 166 232 -60 7 1305 546 143 0 0 chr3 94377773 94377864 -65221919 + (GA)n Simple_repeat Simple_repeat 2 92 0 7 1305 229 215 29 58 chr3 94377870 94377939 -65221844 + ID_B1 SINE B4 129 195 -29 7 1305 223 258 94 31 chr3 94377939 94377964 -65221819 + B1F SINE Alu 42 141 -8 7 1305 563 250 25 50 chr3 94378276 94378478 -65221305 - B3A SINE B2 -1 197 1 8 1305 459 185 0 0 chr3 94378875 94378967 -65220816 + (CATA)n Simple_repeat Simple_repeat 3 94 0 8 1305 223 143 0 0 chr3 94379007 94379042 -65220741 + B1_Mur4 SINE Alu 1 35 -115 8 1305 246 318 25 68 chr3 94379253 94379415 -65220368 + RSINE1 SINE B4 3 157 -8 8 1305 21 0 0 0 chr3 94379454 94379475 -65220308 + AT_rich Low_complexity Low_complexity 1 21 0 8 1305 448 251 24 16 chr3 94379666 94379798 -65219985 - PB1D10 SINE Alu 0 149 21 8 1305 793 166 0 7 chr3 94379844 94379984 -65219799 - B1_Mur2 SINE Alu -2 147 9 8 1305 467 232 7 92 chr3 94379848 94380000 -65219783 - ID_B1 SINE B4 -6 218 80 8 1305 900 150 0 26 chr3 94380186 94380337 -65219446 + B1_Mus2 SINE Alu 1 147 0 8 1305 358 20 0 38 chr3 94380338 94380391 -65219392 + (CAAAAA)n Simple_repeat Simple_repeat 2 52 0 8 1305 643 191 8 0 chr3 94380635 94380761 -65219022 - B1_Mur1 SINE Alu -10 139 13 8 1305 259 231 0 125 chr3 94380672 94380776 -65219007 - MT2B LTR ERVL -347 254 164 8 1305 1040 206 58 74 chr3 94381108 94381417 -65218366 + Lx8 LINE L1 7168 7471 -2 8 1305 184 278 42 53 chr3 94382098 94382193 -65217590 + MER5A DNA MER1_type 91 184 -5 8 1305 286 298 19 37 chr3 94382606 94382714 -65217069 + B4 SINE B4 15 120 -172 8 1305 754 218 89 45 chr3 94383617 94383819 -65215964 + ID_B1 SINE B4 3 213 -11 8 1305 198 0 0 0 chr3 94384058 94384080 -65215703 + (A)n Simple_repeat Simple_repeat 1 22 0 8 1305 22 35 0 0 chr3 94386194 94386223 -65213560 + GC_rich Low_complexity Low_complexity 1 29 0 8 1305 31 58 0 0 chr3 94386518 94386570 -65213213 + GC_rich Low_complexity Low_complexity 1 52 0 8 1305 751 116 8 0 chr3 94386794 94386915 -65212868 - B1_Mus2 SINE Alu 0 147 26 8 1305 546 299 104 38 chr3 94387449 94387841 -65211942 - LTR40c LTR ERVL -24 495 24 8 1305 1130 90 0 0 chr3 94388360 94388505 -65211278 - B1_Mus2 SINE Alu 0 147 3 8 1305 508 175 19 46 chr3 94388528 94388636 -65211147 + PB1D9 SINE Alu 15 119 -1 8 1305 24 0 0 0 chr3 94388655 94388679 -65211104 + AT_rich Low_complexity Low_complexity 1 24 0 8 1305 942 179 23 22 chr3 94388691 94388890 -65210893 + B2_Mm2 SINE B2 2 214 -2 8 1305 809 214 62 43 chr3 94388924 94389134 -65210649 + ID_B1 SINE B4 1 214 -10 8 1305 366 156 0 0 chr3 94389146 94389210 -65210573 + (CA)n Simple_repeat Simple_repeat 1 64 0 8 1305 657 228 182 16 chr3 94389778 94389965 -65209818 + ID_B1 SINE B4 7 224 0 8 1305 333 229 142 9 chr3 94390203 94390309 -65209474 + RSINE1 SINE B4 3 122 -43 8 1305 774 143 104 15 chr3 94390350 94390485 -65209298 + B1_Mur3 SINE Alu 1 147 -2 8 1305 234 0 0 0 chr3 94390515 94390541 -65209242 + (TG)n Simple_repeat Simple_repeat 1 26 0 8 1305 234 0 0 0 chr3 94390541 94390566 -65209217 + (GA)n Simple_repeat Simple_repeat 1 26 0 8 1305 378 181 40 53 chr3 94390622 94390698 -65209085 + ID_B1 SINE B4 142 216 -8 8 1305 209 291 68 23 chr3 94391100 94391188 -65208595 - L2 LINE L2 -661 2758 2667 8 1305 590 310 119 44 chr3 94392032 94392538 -65207245 + MLT1E1A LTR MaLR 41 680 0 8 1305 725 229 59 0 chr3 94392650 94392778 -65207005 + B3 SINE B2 40 167 -49 8 1305 234 0 0 0 chr3 94392778 94392804 -65206979 + (CAGA)n Simple_repeat Simple_repeat 4 29 0 8 1305 725 229 59 0 chr3 94392804 94392828 -65206955 + B3 SINE B2 168 200 -16 8 1305 392 360 71 33 chr3 94392841 94393051 -65206732 - MLT1L LTR MaLR -351 259 42 8 1305 322 267 18 9 chr3 94393126 94393353 -65206430 - RMER17D LTR ERVK -410 479 251 8 1305 3113 37 39 5 chr3 94393668 94394051 -65205732 + MTA_Mm LTR MaLR 1 396 0 8 1305 213 121 0 0 chr3 94394286 94394319 -65205464 + (A)n Simple_repeat Simple_repeat 1 33 0 8 1305 339 164 0 0 chr3 94394314 94394375 -65205408 + GA-rich Low_complexity Low_complexity 2 62 0 8 1305 1282 80 0 0 chr3 94394385 94394548 -65205235 + B2_Mm2 SINE B2 2 164 -31 8 1305 22 0 0 0 chr3 94394623 94394645 -65205138 + AT_rich Low_complexity Low_complexity 1 22 0 8 1305 1160 88 0 0 chr3 94394646 94394793 -65204990 + B1_Mus1 SINE Alu 2 148 0 8 1305 21 0 0 0 chr3 94394823 94394844 -65204939 + AT_rich Low_complexity Low_complexity 1 21 0 8 1305 629 142 122 17 chr3 94394868 94394983 -65204800 - B1_Mur3 SINE Alu 0 149 23 8 1305 2197 182 10 204 chr3 94394991 94395688 -65204095 + RMER19C LTR ERVK 3 564 -47 8 1305 207 0 0 0 chr3 94395690 94395713 -65204070 + (T)n Simple_repeat Simple_repeat 1 23 0 8 1305 1122 82 0 0 chr3 94395713 94395860 -65203923 - B1_Mus2 SINE Alu 0 147 1 8 1305 1379 84 10 16 chr3 94395945 94396138 -65203645 - B2_Mm1t SINE B2 0 193 2 8 1305 724 262 74 43 chr3 94396151 94396502 -65203281 + L1MB3 LINE L1 5814 6175 -8 8 1305 490 226 11 0 chr3 94396513 94396606 -65203177 + B1_Mur2 SINE Alu 38 131 -18 8 1305 554 224 9 0 chr3 94396851 94396957 -65202826 - B1F2 SINE Alu -14 135 29 8 1305 411 245 39 0 chr3 94396957 94397050 -65202733 + ORR1D1 LTR MaLR 1 97 -277 8 1305 740 186 52 69 chr3 94397050 94397223 -65202560 - RMER4B LTR ERVK 0 585 416 8 1305 2740 106 44 3 chr3 94397223 94397612 -65202171 - RLTR44A LTR ERVK 0 405 1 8 1305 5140 24 24 0 chr3 94397612 94398197 -65201586 - RLTR44-int LTR ERVK 0 2812 2214 8 1305 829 65 0 9 chr3 94398681 94398828 -65200955 - RLTR44-int LTR ERVK -1831 981 778 8 1305 22 70 0 0 chr3 94399394 94399437 -65200346 + AT_rich Low_complexity Low_complexity 1 43 0 8 1305 21 0 0 0 chr3 94399544 94399565 -65200218 + AT_rich Low_complexity Low_complexity 1 21 0 8 1305 426 115 0 0 chr3 94399621 94399682 -65200101 - RLTR44-int LTR ERVK -2509 303 243 8 1305 2649 105 60 3 chr3 94399707 94400090 -65199693 - RLTR44A LTR ERVK 0 405 1 8 1305 2349 152 49 12 chr3 94400091 94400496 -65199287 - RMER4B LTR ERVK -165 420 1 8 1305 1258 172 120 0 chr3 94400499 94400749 -65199034 + ORR1D1 LTR MaLR 95 374 0 8 1305 663 230 26 91 chr3 94400755 94400985 -65198798 - B3 SINE B2 -1 215 1 8 1305 316 289 48 0 chr3 94401000 94401083 -65198700 - PB1 SINE Alu -40 87 1 8 1305 194 62 0 30 chr3 94401148 94401181 -65198602 + (TAA)n Simple_repeat Simple_repeat 2 33 0 8 1305 270 94 208 0 chr3 94401827 94401880 -65197903 - B1F1 SINE Alu -1 148 85 8 1305 292 281 67 19 chr3 94401903 94402008 -65197775 - PB1D10 SINE Alu -7 110 1 8 1305 413 260 39 29 chr3 94402471 94402574 -65197209 - ID_B1 SINE B4 -118 106 3 8 1305 300 111 0 0 chr3 94402574 94402619 -65197164 + (TTTTC)n Simple_repeat Simple_repeat 4 48 0 8 1305 349 263 73 41 chr3 94402619 94402647 -65197136 - ID_B1 SINE B4 0 224 199 8 1305 2047 177 133 38 chr3 94402647 94403205 -65196578 + RMER19C LTR ERVK 1 611 0 8 1305 349 263 73 41 chr3 94403205 94403299 -65196484 - ID_B1 SINE B4 -26 198 99 8 1305 216 231 0 0 chr3 94403270 94403309 -65196474 - B1_Mus1 SINE Alu -102 46 8 8 1305 228 354 90 17 chr3 94403319 94403367 -65196416 - B2_Mm2 SINE B2 -4 191 1 8 1305 521 292 39 0 chr3 94403367 94403497 -65196286 - RSINE1 SINE B4 -28 137 3 8 1305 981 56 0 0 chr3 94403582 94403708 -65196075 - B1_Mus2 SINE Alu -8 139 14 8 1305 553 239 47 145 chr3 94403708 94403817 -65195966 - B4 SINE B4 -74 218 7 8 1305 183 42 0 0 chr3 94403982 94404006 -65195777 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 8 1305 1209 55 7 0 chr3 94404272 94404417 -65195366 - B1_Mus2 SINE Alu 0 147 2 8 1305 506 221 128 85 chr3 94404427 94404518 -65195265 - B3A SINE B2 -2 196 99 8 1305 2934 60 38 23 chr3 94404518 94404663 -65195120 - MTB LTR MaLR 0 400 254 8 1305 1155 37 0 0 chr3 94404663 94404797 -65194986 + B1_Mm SINE Alu 1 134 -13 8 1305 2934 60 38 23 chr3 94404797 94405045 -65194738 - MTB LTR MaLR -147 253 1 8 1305 506 221 128 85 chr3 94405045 94405141 -65194642 - B3A SINE B2 -100 98 1 8 1305 657 241 0 65 chr3 94405556 94405711 -65194072 - ID_B1 SINE B4 -1 223 79 8 1305 306 0 0 0 chr3 94406005 94406039 -65193744 + (CA)n Simple_repeat Simple_repeat 2 35 0 8 1305 253 214 64 53 chr3 94406224 94406318 -65193465 - MIRc SINE MIR -110 158 64 8 1305 806 211 16 58 chr3 94406410 94406601 -65193182 + B3A SINE B2 1 183 -15 8 1305 930 182 112 20 chr3 94406629 94406825 -65192958 + B3 SINE B2 3 216 0 8 1305 225 227 40 120 chr3 94406850 94406881 -65192902 + ID4_ SINE ID 11 76 -4 8 1305 232 244 0 0 chr3 94406881 94406922 -65192861 + tRNA-Ala-GCA tRNA tRNA 33 73 -2 8 1305 895 94 38 0 chr3 94407180 94407339 -65192444 - MYSERV16_I-int LTR ERVK -1082 1244 1080 8 1305 1181 35 14 14 chr3 94407342 94407489 -65192294 + B1_Mus2 SINE Alu 1 147 0 8 1305 879 141 16 110 chr3 94407519 94407710 -65192073 - MYSERV16_I-int LTR ERVK -1444 882 710 8 1305 1321 161 55 12 chr3 94407805 94408062 -65191721 - MYSERV16_I-int LTR ERVK -1782 544 277 8 1305 509 237 23 118 chr3 94408062 94408282 -65191501 - MYSERV6-int LTR ERVK -1456 1386 1188 8 1305 724 333 41 6 chr3 94409136 94409474 -65190309 - MYSERV6-int LTR ERVK -8158 801 452 8 1305 421 140 0 0 chr3 94409740 94409797 -65189986 + tRNA-Lys-AAG tRNA tRNA 20 76 0 8 1305 2642 113 33 64 chr3 94409800 94409844 -65189939 - BGLII_B LTR ERVK 0 441 400 8 1305 237 83 0 0 chr3 94409844 94409880 -65189903 + (CAA)n Simple_repeat Simple_repeat 2 37 0 8 1305 2642 113 33 64 chr3 94409880 94409942 -65189841 - BGLII_B LTR ERVK -42 399 361 8 1305 1328 70 29 0 chr3 94409942 94410114 -65189669 - B2_Mm1a SINE B2 -14 179 3 8 1305 2642 113 33 64 chr3 94410114 94410461 -65189322 - BGLII_B LTR ERVK -81 360 1 8 1305 264 284 61 12 chr3 94410464 94410546 -65189237 + MIR SINE MIR 81 166 -96 8 1305 2347 119 64 55 chr3 94410845 94410887 -65188896 + RMER4A LTR ERVK 21 59 -407 8 1305 1239 96 10 31 chr3 94410887 94411080 -65188703 - B2_Mm1a SINE B2 -3 190 2 8 1305 2347 119 64 55 chr3 94411080 94411472 -65188311 + RMER4A LTR ERVK 60 459 -7 8 1305 739 242 120 6 chr3 94411508 94411691 -65188092 - B3 SINE B2 -10 206 3 8 1305 612 164 384 0 chr3 94411720 94411866 -65187917 - B3 SINE B2 -10 206 5 8 1305 234 0 0 0 chr3 94411878 94411904 -65187879 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 8 1305 770 170 37 7 chr3 94411904 94412040 -65187743 - B1_Mus1 SINE Alu -8 140 1 8 1305 1268 79 11 17 chr3 94412073 94412254 -65187529 - B2_Mm2 SINE B2 -15 180 1 8 1305 952 119 53 0 chr3 94412263 94412414 -65187369 - B2_Mm2 SINE B2 0 195 37 9 1305 340 160 55 36 chr3 94412413 94412540 -65187243 - B2_Mm2 SINE B2 -9 186 19 9 1305 923 105 171 0 chr3 94412554 94412706 -65187077 - B2_Mm1t SINE B2 -14 179 2 9 1305 321 118 0 0 chr3 94412716 94412767 -65187016 + (T)n Simple_repeat Simple_repeat 1 51 0 9 1305 1037 45 23 0 chr3 94412767 94412900 -65186883 - B1_Mus1 SINE Alu 0 148 13 9 1305 1452 33 52 47 chr3 94413155 94413347 -65186436 - B2_Mm1a SINE B2 0 193 1 9 1305 813 172 20 7 chr3 94413369 94413515 -65186268 + B1_Mur2 SINE Alu 1 148 -1 9 1305 212 167 0 0 chr3 94413515 94413551 -65186232 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 9 1305 581 149 39 10 chr3 94413590 94413692 -65186091 + PB1D9 SINE Alu 9 113 -7 9 1305 1455 78 5 0 chr3 94413933 94414124 -65185659 - B2_Mm2 SINE B2 -2 193 2 9 1305 242 250 15 15 chr3 94414900 94414935 -65184848 + MT2B2 LTR ERVL 223 257 -327 9 1305 337 164 47 12 chr3 94414935 94415042 -65184741 + B1F2 SINE Alu 1 106 -41 9 1305 616 227 0 0 chr3 94415064 94415174 -65184609 - B1_Mur1 SINE Alu -35 114 5 9 1305 373 306 61 53 chr3 94415069 94415200 -65184583 - B4 SINE B4 -94 198 67 9 1305 260 307 125 0 chr3 94415189 94415277 -65184506 - PB1 SINE Alu -3 124 26 9 1305 270 265 14 29 chr3 94418436 94418506 -65181277 - Charlie4z DNA MER1_type -92 75 7 9 1305 845 204 30 55 chr3 94418989 94419191 -65180592 - B3A SINE B2 0 198 2 9 1305 297 346 12 0 chr3 94420035 94420116 -65179667 - L2a LINE L2 0 3426 3345 9 1305 937 121 14 41 chr3 94420970 94421116 -65178667 - B1_Mur4 SINE Alu -8 142 1 9 1305 291 211 0 0 chr3 94421116 94421158 -65178625 + T-rich Low_complexity Low_complexity 49 90 0 9 1305 1210 41 7 0 chr3 94421158 94421304 -65178479 - B1_Mus1 SINE Alu 0 148 2 9 1305 1742 16 0 0 chr3 94421310 94421501 -65178282 - B2_Mm1a SINE B2 0 193 3 9 1305 291 211 0 0 chr3 94421501 94421541 -65178242 + T-rich Low_complexity Low_complexity 3 42 0 9 1305 1420 75 5 11 chr3 94421547 94421736 -65178047 - B2_Mm1t SINE B2 -5 188 1 9 1305 765 115 0 9 chr3 94421782 94421896 -65177887 + B2_Mm2 SINE B2 2 114 -81 9 1305 606 168 88 0 chr3 94421897 94422010 -65177773 + ETnERV2-int LTR ERVK 7070 7192 -214 9 1305 265 192 57 114 chr3 94422410 94422498 -65177285 + B2_Mm2 SINE B2 109 191 -4 9 1305 798 204 35 20 chr3 94422591 94422777 -65177006 - B3 SINE B2 0 195 2 9 1305 273 54 0 0 chr3 94422789 94422813 -65176970 + (T)n Simple_repeat Simple_repeat 1 24 0 9 1305 1224 54 0 0 chr3 94422813 94422960 -65176823 - B1_Mm SINE Alu 0 147 1 9 1305 273 54 0 0 chr3 94422960 94422972 -65176811 + (T)n Simple_repeat Simple_repeat 1 12 0 9 1305 519 305 150 61 chr3 94423320 94423666 -65176117 + MER21B LTR ERV1 384 760 -103 9 1305 982 117 14 14 chr3 94423810 94423958 -65175825 + B1_Mur4 SINE Alu 3 150 0 9 1305 823 182 7 20 chr3 94424380 94424531 -65175252 - B1_Mur1 SINE Alu 0 149 1 9 1305 244 323 51 20 chr3 94424797 94424895 -65174888 - PB1D10 SINE Alu -8 109 9 9 1305 332 262 0 176 chr3 94424868 94425016 -65174767 - MT2B LTR ERVL -310 291 170 9 1305 605 172 0 0 chr3 94424924 94425017 -65174766 - B1F1 SINE Alu -52 97 5 9 1305 1811 160 75 10 chr3 94425395 94425780 -65174003 - RMER17C LTR ERVK 0 410 1 9 1305 1144 76 7 0 chr3 94428051 94428196 -65171587 + B1_Mus2 SINE Alu 2 147 0 9 1305 512 32 16 0 chr3 94428679 94428742 -65171041 - L1_Mus2 LINE L1 -363 6203 6140 9 1305 1763 63 0 0 chr3 94428742 94428963 -65170820 + L1_Mus1 LINE L1 6347 6567 0 9 1305 368 204 8 142 chr3 94429175 94429295 -65170488 + MT2B LTR ERVL 161 264 -337 9 1305 1036 47 0 0 chr3 94429201 94429330 -65170453 + B1_Mm SINE Alu 19 147 0 9 1305 180 0 0 0 chr3 94429333 94429353 -65170430 + (A)n Simple_repeat Simple_repeat 1 20 0 9 1305 426 299 41 7 chr3 94429353 94429498 -65170285 + RSINE1 SINE B4 12 161 -4 9 1305 984 180 107 0 chr3 94429651 94429820 -65169963 - RMER4B LTR ERVK 0 585 398 9 1305 2909 130 103 8 chr3 94429820 94430268 -65169515 + RLTR20A2 LTR ERVK 1 479 -99 9 1305 486 0 0 0 chr3 94430268 94430322 -65169461 + (TG)n Simple_repeat Simple_repeat 2 55 0 9 1305 2909 130 103 8 chr3 94430322 94430370 -65169413 + RLTR20A2 LTR ERVK 480 543 -35 9 1305 2357 130 10 47 chr3 94430366 94430771 -65169012 - RMER4B LTR ERVK -195 390 1 9 1305 534 261 49 67 chr3 94430915 94431079 -65168704 + RSINE1 SINE B4 5 165 0 9 1305 229 200 185 77 chr3 94431124 94431189 -65168594 + ID4_ SINE ID 2 73 -10 9 1305 229 274 204 152 chr3 94431189 94431335 -65168448 + ID_B1 SINE B4 2 223 -1 9 1305 985 186 114 0 chr3 94431338 94431531 -65168252 + B3 SINE B2 2 216 0 9 1305 228 346 67 0 chr3 94431615 94431719 -65168064 - L2a LINE L2 0 3426 3316 9 1305 231 271 14 28 chr3 94431848 94431920 -65167863 + BC1_Mm scRNA scRNA 16 86 -66 9 1305 411 38 0 0 chr3 94432399 94432452 -65167331 + (CA)n Simple_repeat Simple_repeat 2 54 0 9 1305 358 258 124 8 chr3 94432507 94432636 -65167147 - B1F SINE Alu -1 148 5 9 1305 296 306 0 0 chr3 94433524 94433602 -65166181 + ID4_ SINE ID 4 81 -2 9 1305 362 250 0 14 chr3 94433670 94433743 -65166040 - B1F1 SINE Alu -65 84 13 9 1305 277 254 127 0 chr3 94433693 94433756 -65166027 - ID_B1 SINE B4 -81 143 73 9 1305 22 0 0 0 chr3 94433788 94433810 -65165973 + AT_rich Low_complexity Low_complexity 1 22 0 9 1305 469 322 57 63 chr3 94434503 94434662 -65165121 + RSINE1 SINE B4 8 165 0 9 1305 21 0 0 0 chr3 94435228 94435249 -65164534 + AT_rich Low_complexity Low_complexity 1 21 0 9 1305 479 231 25 33 chr3 94435302 94435423 -65164360 + PB1D9 SINE Alu 1 120 0 9 1305 1242 112 6 0 chr3 94435455 94435625 -65164158 + B2_Mm1t SINE B2 1 171 -22 9 1305 349 127 298 91 chr3 94435711 94435832 -65163951 + B2_Mm2 SINE B2 47 193 0 9 1305 431 312 17 75 chr3 94435993 94436058 -65163725 + MER5B DNA MER1_type 1 63 -115 9 1305 650 246 87 77 chr3 94436058 94436265 -65163518 + B3 SINE B2 2 210 -6 9 1305 431 312 17 75 chr3 94436265 94436372 -65163411 + MER5B DNA MER1_type 64 163 -15 9 1305 539 213 260 0 chr3 94436675 94436802 -65162981 + RSINE1 SINE B4 4 163 -2 9 1305 240 316 31 21 chr3 94436859 94436956 -65162827 + GA-rich Low_complexity Low_complexity 4 101 0 9 1305 802 236 40 0 chr3 94437782 94437956 -65161827 + B3 SINE B2 35 215 -1 9 1305 706 252 0 0 chr3 94437964 94438103 -65161680 + B1_Mur3 SINE Alu 1 139 -10 9 1305 186 167 0 0 chr3 94438105 94438141 -65161642 + GA-rich Low_complexity Low_complexity 1 36 0 9 1305 192 299 122 58 chr3 94438625 94438781 -65161002 - L2a LINE L2 -76 3350 3185 9 1305 514 226 20 0 chr3 94438850 94438952 -65160831 + B1_Mur4 SINE Alu 45 148 -2 9 1305 306 264 63 47 chr3 94438955 94439007 -65160776 + L1MB7 LINE L1 2396 2449 -4184 9 1305 1177 61 14 0 chr3 94439007 94439154 -65160629 + B1_Mur4 SINE Alu 2 150 0 9 1305 306 264 63 47 chr3 94439154 94439228 -65160555 + L1MB7 LINE L1 2450 2524 -4109 9 1305 378 313 78 15 chr3 94439918 94440122 -65159661 + L1MB7 LINE L1 4538 4754 -1783 9 1305 554 312 49 32 chr3 94440136 94440421 -65159362 + B4A SINE B4 1 290 -2 9 1305 450 236 112 9 chr3 94440500 94440607 -65159176 + PB1D7 SINE Alu 1 118 -2 9 1305 413 238 81 16 chr3 94440617 94440741 -65159042 + B1F2 SINE Alu 1 132 -17 9 1305 874 217 41 55 chr3 94440772 94440991 -65158792 + B3 SINE B2 1 216 0 9 1305 312 279 29 35 chr3 94441022 94441193 -65158590 + ORR1B1-int LTR MaLR 585 754 -755 9 1305 1032 52 0 7 chr3 94441097 94441233 -65158550 + B1_Mus1 SINE Alu 14 148 0 9 1305 931 222 72 0 chr3 94441292 94441486 -65158297 - B3 SINE B2 -7 209 2 9 1305 319 271 188 19 chr3 94441490 94441644 -65158139 + L1MB7 LINE L1 4999 5178 -1359 9 1305 253 231 31 0 chr3 94441699 94441764 -65158019 + L1MA5 LINE L1 6233 6299 -1 9 1305 300 241 121 35 chr3 94441765 94441881 -65157902 + L1MB7 LINE L1 6260 6385 -190 9 1305 340 211 109 42 chr3 94442041 94442160 -65157623 + L1MB7 LINE L1 6448 6574 -1 9 1305 968 235 5 15 chr3 94442167 94442370 -65157413 - B3 SINE B2 -10 206 6 9 1305 838 262 10 20 chr3 94442392 94442587 -65157196 - B3A SINE B2 -1 197 5 9 1305 295 319 54 33 chr3 94443725 94443833 -65155950 - PB1D10 SINE Alu -5 115 1 9 1305 516 32 0 0 chr3 94443941 94444003 -65155780 + (CA)n Simple_repeat Simple_repeat 2 63 0 9 1305 360 241 33 33 chr3 94444008 94444098 -65155685 + PB1D10 SINE Alu 28 117 0 9 1305 225 169 0 119 chr3 94444585 94444646 -65155137 + B1_Mur1 SINE Alu 84 138 -11 9 1305 188 34 0 33 chr3 94444646 94444676 -65155107 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 9 1305 406 303 10 0 chr3 94444735 94444834 -65154949 + RSINE1 SINE B4 31 130 -35 9 1305 274 279 0 0 chr3 94444893 94444961 -65154822 + (TG)n Simple_repeat Simple_repeat 2 69 0 9 1305 326 235 0 81 chr3 94444973 94445047 -65154736 - B4A SINE B4 0 292 225 9 1305 416 173 25 0 chr3 94445057 94445138 -65154645 - B1_Mur2 SINE Alu -14 135 53 9 1305 540 246 165 28 chr3 94445131 94445307 -65154476 - B4A SINE B4 -62 230 31 9 1305 1094 202 20 0 chr3 94445357 94445560 -65154223 - B3 SINE B2 -9 207 1 9 1305 254 299 66 66 chr3 94445689 94445825 -65153958 - RLTR25B LTR ERVK -443 585 450 9 1305 593 193 160 0 chr3 94445735 94445854 -65153929 - B1_Mur2 SINE Alu -2 147 10 9 1305 332 245 30 20 chr3 94445869 94445934 -65153849 - RCHARR1 DNA MER1_type -134 840 775 9 1305 336 250 143 0 chr3 94445934 94446018 -65153765 + MTE2a LTR MaLR 1 96 -283 9 1305 319 184 137 9 chr3 94446017 94446099 -65153684 + B1F2 SINE Alu 10 95 -25 9 1305 639 307 29 41 chr3 94446099 94446164 -65153619 + ID SINE ID 19 81 -143 1 1305 393 278 55 83 chr3 94446164 94446309 -65153474 + B1F SINE Alu 3 143 -6 1 1305 443 133 78 0 chr3 94446310 94446400 -65153383 + L1MD LINE L1 3318 3414 -2732 1 1305 516 207 274 0 chr3 94446628 94446792 -65152991 - B3 SINE B2 -6 210 2 1 1305 247 287 88 23 chr3 94446809 94446980 -65152803 + L1MD1 LINE L1 5781 5962 -280 1 1305 192 77 0 0 chr3 94447556 94447582 -65152201 + (GA)n Simple_repeat Simple_repeat 2 27 0 1 1305 1153 68 0 0 chr3 94447817 94447963 -65151820 - B1_Mus2 SINE Alu 0 147 2 1 1305 1343 91 0 5 chr3 94448003 94448190 -65151593 - B2_Mm2 SINE B2 -8 187 2 1 1305 309 278 21 62 chr3 94448419 94448499 -65151284 + HAL1-3A_ME LINE L1 1974 2050 -808 1 1305 832 188 109 50 chr3 94448499 94448701 -65151082 + B3 SINE B2 3 216 0 1 1305 309 278 21 62 chr3 94448701 94448716 -65151067 + HAL1-3A_ME LINE L1 2051 2065 -793 1 1305 904 239 48 14 chr3 94448871 94449079 -65150704 + ID_B1 SINE B4 3 217 -7 1 1305 1067 116 13 13 chr3 94449090 94449247 -65150536 + B2_Mm2 SINE B2 2 158 -37 1 1305 519 95 0 0 chr3 94449250 94449324 -65150459 + (TA)n Simple_repeat Simple_repeat 2 75 0 1 1305 853 230 35 0 chr3 94449369 94449543 -65150240 - B3 SINE B2 -4 212 33 1 1305 715 179 17 8 chr3 94449557 94449675 -65150108 + B1_Mur1 SINE Alu 23 141 -8 1 1305 553 238 16 0 chr3 94449716 94449842 -65149941 + Lx8 LINE L1 6983 7110 -363 1 1305 1053 126 198 11 chr3 94449935 94450112 -65149671 + B3 SINE B2 1 210 -6 1 1305 235 262 136 15 chr3 94450217 94450283 -65149500 + Lx8 LINE L1 6931 7004 -469 1 1305 1135 70 7 0 chr3 94450302 94450444 -65149339 - B1_Mm SINE Alu 0 147 5 1 1305 192 48 71 0 chr3 94450500 94450542 -65149241 + (TTTTTG)n Simple_repeat Simple_repeat 3 47 0 1 1305 522 289 0 32 chr3 94450543 94450697 -65149086 - B1_Mur1 SINE Alu 0 149 1 1 1305 611 172 17 8 chr3 94450859 94450976 -65148807 - PB1D9 SINE Alu -1 119 2 1 1305 1245 111 6 0 chr3 94451096 94451268 -65148515 + B2_Mm2 SINE B2 2 174 -21 1 1305 1083 193 5 36 chr3 94451398 94451618 -65148165 + B3 SINE B2 1 213 -3 1 1305 230 380 88 9 chr3 94451634 94451653 -65148130 + ID_B1 SINE B4 73 195 -29 1 1305 333 316 116 0 chr3 94451653 94451748 -65148035 + B1F SINE Alu 12 117 -32 1 1305 397 275 185 0 chr3 94451878 94452056 -65147727 - MIR SINE MIR -43 219 9 1 1305 493 146 12 24 chr3 94452131 94452215 -65147568 + ID_B1 SINE B4 126 208 -16 1 1305 1000 226 80 33 chr3 94452360 94452634 -65147149 - B4 SINE B4 -4 288 2 1 1305 369 62 0 0 chr3 94452695 94452743 -65147040 + (GGGGA)n Simple_repeat Simple_repeat 5 52 0 1 1305 188 276 78 13 chr3 94453487 94453564 -65146219 - L3 LINE CR1 -932 3557 3476 1 1305 400 239 232 25 chr3 94454973 94455137 -65144646 - ID_B1 SINE B4 -26 198 1 1 1305 1476 28 55 6 chr3 94455166 94455349 -65144434 + B2_Mm2 SINE B2 2 193 -2 1 1305 485 240 43 49 chr3 94455362 94455546 -65144237 + L1MB8 LINE L1 5627 5809 -375 1 1305 268 204 0 18 chr3 94455549 94455604 -65144179 + B4 SINE B4 80 133 -159 1 1305 634 169 96 37 chr3 94455560 94455695 -65144088 + B1_Mus1 SINE Alu 6 148 0 1 1305 839 289 57 23 chr3 94455710 94456061 -65143722 + L1MB8 LINE L1 5815 6177 -1 1 1305 1045 199 48 5 chr3 94456114 94456321 -65143462 - B3 SINE B2 0 216 1 1 1305 224 222 22 0 chr3 94456475 94456520 -65143263 + GA-rich Low_complexity Low_complexity 5 50 0 1 1305 691 224 13 20 chr3 94456523 94456673 -65143110 + B1_Mur3 SINE Alu 1 149 0 1 1305 719 164 23 23 chr3 94456682 94456857 -65142926 + GA-rich Low_complexity Low_complexity 3 177 0 1 1305 279 230 98 18 chr3 94456958 94457122 -65142661 + RMER17C LTR ERVK 97 273 -137 1 1305 351 121 0 0 chr3 94457123 94457181 -65142602 + (GGGGA)n Simple_repeat Simple_repeat 5 62 0 1 1305 593 244 30 0 chr3 94457378 94457509 -65142274 + B1F1 SINE Alu 4 138 -11 1 1305 242 208 18 36 chr3 94457543 94457598 -65142185 + B4A SINE B4 19 72 -220 1 1305 559 255 58 13 chr3 94457742 94457897 -65141886 - MIR SINE MIR 0 262 101 1 1305 453 222 307 0 chr3 94457973 94458126 -65141657 - ID_B1 SINE B4 -4 220 21 1 1305 321 310 0 0 chr3 94458311 94458382 -65141401 + tRNA-Ala-GCY_ tRNA tRNA 1 71 -4 1 1305 590 269 105 0 chr3 94458412 94458583 -65141200 + ID_B1 SINE B4 2 190 -34 1 1305 305 314 169 0 chr3 94458629 94458753 -65141030 + RSINE1 SINE B4 2 146 -19 1 1305 239 227 79 35 chr3 94458769 94458883 -65140900 + HAL1 LINE L1 2273 2391 -116 1 1305 359 250 77 0 chr3 94458984 94459088 -65140695 + PB1D10 SINE Alu 6 117 0 1 1305 759 265 48 14 chr3 94459127 94459334 -65140449 - B3 SINE B2 -1 215 2 1 1305 817 212 20 0 chr3 94460055 94460201 -65139582 - B1_Mur1 SINE Alu 0 149 1 1 1305 436 247 0 0 chr3 94460289 94460370 -65139413 + ID SINE ID 2 82 -142 1 1305 1200 54 0 20 chr3 94460659 94460809 -65138974 - B1_Mus1 SINE Alu 0 148 2 1 1305 1191 108 23 6 chr3 94461015 94461192 -65138591 + B2_Mm2 SINE B2 1 180 -15 1 1305 1095 246 122 24 chr3 94463753 94464090 -65135693 + ORR1D2 LTR MaLR 1 370 0 1 1305 433 270 8 75 chr3 94464249 94464369 -65135414 + RSINE1 SINE B4 18 129 -36 1 1305 342 0 0 0 chr3 94464389 94464427 -65135356 + (CA)n Simple_repeat Simple_repeat 2 39 0 1 1305 27 0 0 0 chr3 94464520 94464547 -65135236 + AT_rich Low_complexity Low_complexity 1 27 0 1 1305 198 0 0 0 chr3 94465713 94465735 -65134048 + (A)n Simple_repeat Simple_repeat 1 22 0 1 1305 313 292 16 3 chr3 94466573 94466665 -65133118 + B4 SINE B4 1 93 -199 1 1305 238 292 40 53 chr3 94466754 94466830 -65132953 + RSINE1 SINE B4 90 164 -1 1 1305 229 304 125 19 chr3 94467887 94467991 -65131792 + MTE2b LTR MaLR 191 305 -74 1 1305 761 279 106 8 chr3 94467991 94468226 -65131557 + MTE-int LTR MaLR 958 1215 -365 1 1305 572 220 175 51 chr3 94468230 94468407 -65131376 + MTE-int LTR MaLR 1367 1565 -15 1 1305 685 182 21 35 chr3 94468410 94468552 -65131231 + B1_Mur1 SINE Alu 8 147 -2 1 1305 563 281 50 30 chr3 94469316 94469514 -65130269 + MIR SINE MIR 1 202 -60 1 1305 330 291 101 65 chr3 94469568 94469785 -65129998 - MER102a DNA MER1_type -78 252 28 1 1305 384 213 83 21 chr3 94470305 94470401 -65129382 + PB1D9 SINE Alu 18 119 -1 1 1305 538 176 83 6 chr3 94470493 94470616 -65129167 + PB1D9 SINE Alu 7 144 -6 1 1305 295 214 0 18 chr3 94470616 94470673 -65129110 - MER5B DNA MER1_type -122 56 1 1 1305 323 285 80 7 chr3 94471403 94471541 -65128242 + MIR SINE MIR 100 247 -15 1 1305 4685 179 54 19 chr3 94471665 94472521 -65127262 + Lx5 LINE L1 6165 7050 0 1 1305 762 233 13 20 chr3 94472532 94472681 -65127102 + B3A SINE B2 27 174 -24 1 1305 861 164 0 46 chr3 94472712 94472865 -65126918 + B1_Mur3 SINE Alu 3 148 -1 1 1305 302 91 0 18 chr3 94472865 94472921 -65126862 + (CAAA)n Simple_repeat Simple_repeat 1 55 0 1 1305 522 234 133 0 chr3 94473427 94473555 -65126228 + B1_Mur1 SINE Alu 5 149 0 1 1305 219 36 0 0 chr3 94474627 94474655 -65125128 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 1 1305 383 330 69 15 chr3 94474692 94474966 -65124817 + L1MB7 LINE L1 5510 5798 -386 1 1305 1118 178 17 134 chr3 94474978 94475270 -65124513 + RLTRETN_Mm LTR ERVK 1 258 -64 1 1305 14108 84 9 49 chr3 94475270 94475672 -65124111 + MMETn-int LTR ERVK 136 482 -4362 1 1305 1306 20 0 0 chr3 94475672 94475819 -65123964 + B1_Mm SINE Alu 1 147 0 1 1305 14108 84 9 49 chr3 94475819 94477552 -65122231 + MMETn-int LTR ERVK 483 2187 -2657 1 1305 2135 125 12 0 chr3 94477797 94478118 -65121665 + ETnERV2-int LTR ERVK 3724 4048 -3358 1 1305 4576 133 11 3 chr3 94478111 94478745 -65121038 + ETnERV2-int LTR ERVK 6548 7186 -220 1 1305 484 251 178 12 chr3 94478746 94478988 -65120795 + RLTR13D6 LTR ERVK 159 440 -462 1 1305 626 177 41 34 chr3 94478988 94479134 -65120649 + MMETn-int LTR ERVK 4698 4844 0 1 1305 1664 148 11 104 chr3 94479134 94479489 -65120294 + RLTRETN_Mm LTR ERVK 1 322 0 1 1305 683 211 15 0 chr3 94479489 94479622 -65120161 + ID_B1 SINE B4 85 219 -5 1 1305 462 282 90 13 chr3 94479660 94479929 -65119854 + L1MB7 LINE L1 5838 6142 -42 1 1305 635 202 44 0 chr3 94479930 94480044 -65119739 + PB1D9 SINE Alu 2 120 0 1 1305 1681 31 0 0 chr3 94480056 94480247 -65119536 - B2_Mm1a SINE B2 -1 192 2 1 1305 513 140 28 9 chr3 94480297 94480405 -65119378 + GA-rich Low_complexity Low_complexity 4 113 0 1 1305 3289 120 4 10 chr3 94480455 94480945 -65118838 + RLTR1C LTR ERV1 1 487 -16 1 1305 35083 227 18 31 chr3 94480961 94488624 -65111159 + MMERGLN-int LTR ERV1 1 7556 0 1 1305 3257 120 6 10 chr3 94488624 94489113 -65110670 + RLTR1C LTR ERV1 1 487 -16 1 1305 1431 55 39 0 chr3 94489189 94489370 -65110413 - B2_Mm2 SINE B2 -5 190 3 1 1305 509 221 115 23 chr3 94489405 94489535 -65110248 - ID_B1 SINE B4 -3 221 80 1 1305 249 264 81 27 chr3 94489664 94489738 -65110045 - ID4_ SINE ID -2 81 4 1 1305 351 304 204 30 chr3 94489844 94490075 -65109708 - B4A SINE B4 -20 272 2 1 1305 287 49 65 16 chr3 94490169 94490231 -65109552 + (CAAAAA)n Simple_repeat Simple_repeat 2 66 0 1 1305 2067 170 88 5 chr3 94490878 94491262 -65108521 - MTC LTR MaLR 0 421 6 1 1305 245 255 20 0 chr3 94492120 94492171 -65107612 - B4A SINE B4 -200 92 41 1 1305 277 215 62 0 chr3 94492175 94492240 -65107543 - MTEb LTR MaLR 0 379 311 1 1305 1281 107 11 11 chr3 94492240 94492420 -65107363 + B2_Mm2 SINE B2 2 181 -14 1 1305 486 229 292 12 chr3 94492441 94492609 -65107174 + B3 SINE B2 2 216 0 1 1305 521 175 186 32 chr3 94492620 94492744 -65107039 + B1_Mur4 SINE Alu 1 143 -7 1 1305 826 206 0 0 chr3 94492787 94492928 -65106855 + B1_Mus1 SINE Alu 2 142 -6 1 1305 869 121 17 0 chr3 94492928 94493017 -65106766 + (GGAGAA)n Simple_repeat Simple_repeat 4 95 0 1 1305 1249 73 0 11 chr3 94493017 94493197 -65106586 + (GAA)n Simple_repeat Simple_repeat 3 180 0 1 1305 869 121 17 0 chr3 94493197 94493281 -65106502 + (GGAGAA)n Simple_repeat Simple_repeat 6 89 0 1 1305 1120 177 35 0 chr3 94493314 94493512 -65106271 + B3 SINE B2 1 205 -11 1 1305 319 289 50 0 chr3 94493525 94493646 -65106137 - MTEb LTR MaLR -102 277 151 1 1305 387 191 64 45 chr3 94493649 94493759 -65106024 - MT2A LTR ERVL -328 205 94 1 1305 649 211 2 49 chr3 94493738 94493890 -65105893 - MT2A LTR ERVL -340 135 3 1 1305 216 275 34 91 chr3 94493890 94493970 -65105813 - PB1D10 SINE Alu -40 77 3 1 1305 270 0 0 0 chr3 94493971 94494001 -65105782 + (TTTG)n Simple_repeat Simple_repeat 3 32 0 1 1305 841 221 40 55 chr3 94495146 94495347 -65104436 - B3A SINE B2 0 198 1 1 1305 306 185 341 12 chr3 94495419 94495501 -65104282 - B1F2 SINE Alu -40 109 1 1 1305 279 0 0 0 chr3 94495585 94495616 -65104167 + (CA)n Simple_repeat Simple_repeat 1 31 0 1 1305 1066 46 0 0 chr3 94495887 94496018 -65103765 - B1_Mus2 SINE Alu 0 147 17 1 1305 962 171 10 49 chr3 94496270 94496473 -65103310 + Lx5 LINE L1 6856 7050 0 1 1305 332 226 141 12 chr3 94498372 94498457 -65101326 - B3 SINE B2 -2 214 119 1 1305 186 43 0 0 chr3 94498521 94498544 -65101239 + (TTG)n Simple_repeat Simple_repeat 2 24 0 1 1305 225 0 0 0 chr3 94498559 94498584 -65101199 + (TTGG)n Simple_repeat Simple_repeat 2 26 0 1 1305 657 127 99 25 chr3 94498584 94498696 -65101087 - B1F2 SINE Alu -9 140 19 1 1305 316 253 0 13 chr3 94498708 94498784 -65100999 + B1F SINE Alu 1 75 -74 1 1305 666 266 24 60 chr3 94498896 94498963 -65100820 - B3 SINE B2 -54 162 97 1 1305 1086 68 0 0 chr3 94498963 94499095 -65100688 - B1_Mus2 SINE Alu -15 132 1 1 1305 666 266 24 60 chr3 94499095 94499195 -65100588 - B3 SINE B2 -120 96 1 1 1305 228 135 0 0 chr3 94499436 94499473 -65100310 + (T)n Simple_repeat Simple_repeat 1 37 0 1 1305 1193 68 0 0 chr3 94499473 94499619 -65100164 - B1_Mus2 SINE Alu 0 147 2 1 1305 241 254 18 0 chr3 94499867 94499922 -65099861 - ID4 SINE ID -20 63 8 1 1305 417 20 0 0 chr3 94499950 94500000 -65099783 + (TG)n Simple_repeat Simple_repeat 2 51 0 1 1305 444 261 39 83 chr3 94500102 94500117 -65099666 - ID_B1 SINE B4 -45 247 207 1 1305 676 173 85 2 chr3 94500117 94500251 -65099532 - B1_Mur2 SINE Alu 0 149 14 2 1305 444 261 39 83 chr3 94500251 94500303 -65099480 - ID_B1 SINE B4 -45 206 49 1 1305 247 192 48 0 chr3 94500261 94500319 -65099464 - PB1D10 SINE Alu -52 97 32 3 1305 200 260 144 59 chr3 94500336 94500445 -65099338 - MIR SINE MIR -103 159 52 4 1305 343 221 30 34 chr3 94502298 94502396 -65097387 + PB1D10 SINE Alu 24 127 0 5 1305 258 284 15 0 chr3 94502399 94502466 -65097317 + ID4 SINE ID 3 70 -13 6 1305 268 196 9 38 chr3 94502630 94502736 -65097047 + (TTTG)n Simple_repeat Simple_repeat 2 104 0 7 1305 743 197 44 0 chr3 94502749 94502886 -65096897 + B1_Mur3 SINE Alu 1 143 -6 8 163 228 159 45 0 chr3 94502886 94502930 -65096853 + GA-rich Low_complexity Low_complexity 3 48 0 9 1306 1181 68 0 7 chr3 94503009 94503157 -65096626 - B1_Mus1 SINE Alu 0 148 2 1 1306 598 211 45 32 chr3 94504422 94504564 -65095219 + B1_Mur1 SINE Alu 3 150 0 1 1306 1040 218 25 0 chr3 94504564 94504766 -65095017 + B3 SINE B2 4 210 -6 1 1306 272 208 0 0 chr3 94504833 94504881 -65094902 + ID_B1 SINE B4 105 152 -72 1 1306 1202 61 0 0 chr3 94504915 94505062 -65094721 + B1_Mus2 SINE Alu 1 147 0 1 1306 235 281 73 96 chr3 94505112 94505289 -65094494 + MT2B2 LTR ERVL 104 276 -308 1 1306 382 261 36 22 chr3 94505167 94505304 -65094479 - YREP_Mm Unknown Unknown -1488 324 186 1 1306 679 182 33 0 chr3 94505192 94505313 -65094470 + ID_B1 SINE B4 100 224 0 1 1306 480 273 6 49 chr3 94505332 94505447 -65094336 - RLTR28 LTR ERVL 0 524 411 1 1306 659 168 92 0 chr3 94505447 94505578 -65094205 + B1_Mur3 SINE Alu 5 147 -2 1 1306 480 273 6 49 chr3 94505578 94505624 -65094159 - RLTR28 LTR ERVL -114 410 370 1 1306 2407 147 56 5 chr3 94505639 94506070 -65093713 - RLTR28 LTR ERVL -71 453 1 2 1306 492 236 133 8 chr3 94506662 94506790 -65092993 + B1_Mur1 SINE Alu 3 146 -3 2 1306 756 215 147 14 chr3 94506849 94507146 -65092637 - MTEb LTR MaLR -2 377 42 2 1306 854 130 7 0 chr3 94507150 94507304 -65092479 + (TG)n Simple_repeat Simple_repeat 1 155 0 2 1306 357 24 0 0 chr3 94508574 94508616 -65091167 + (TG)n Simple_repeat Simple_repeat 2 43 0 2 1306 1434 157 52 0 chr3 94508616 94508845 -65090938 + ORR1B1 LTR MaLR 113 353 -41 2 1306 1102 95 0 20 chr3 94508845 94508995 -65090788 + B1_Mus1 SINE Alu 2 148 0 2 1306 1587 52 0 0 chr3 94509195 94509387 -65090396 - B2_Mm1a SINE B2 0 193 2 2 1306 213 39 0 0 chr3 94509403 94509429 -65090354 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 2 1306 853 151 0 21 chr3 94509429 94509563 -65090220 - B1_Mus1 SINE Alu -11 137 5 2 1306 346 336 37 22 chr3 94509674 94509808 -65089975 - RMER15 LTR ERVL -93 482 347 3 1306 878 201 44 6 chr3 94509999 94510179 -65089604 - B3A SINE B2 -10 188 2 3 1306 639 207 29 29 chr3 94510974 94511048 -65088735 + B1_Mur1 SINE Alu 9 81 -68 3 1306 4544 65 2 31 chr3 94511048 94511653 -65088130 + LTRIS_Mus LTR ERV1 1 587 0 3 1306 639 207 29 29 chr3 94511653 94511717 -65088066 + B1_Mur1 SINE Alu 82 147 -2 3 1306 1135 51 0 7 chr3 94511720 94511858 -65087925 + B1_Mus2 SINE Alu 2 138 -9 3 1306 808 246 35 20 chr3 94511913 94512116 -65087667 + B3 SINE B2 3 208 -8 3 1306 257 224 52 0 chr3 94512116 94512174 -65087609 - RLTR42-int LTR ERVK -3647 1875 1815 3 1306 269 286 60 0 chr3 94512387 94512471 -65087312 - RLTR42-int LTR ERVK -3725 1797 1709 3 1306 667 157 114 0 chr3 94512974 94513114 -65086669 - ORR1D1 LTR MaLR -9 365 210 3 1306 1961 263 43 69 chr3 94513133 94513602 -65086181 - MTEa-int LTR MaLR -973 607 149 3 1306 423 0 0 0 chr3 94513602 94513649 -65086134 + (CA)n Simple_repeat Simple_repeat 1 47 0 3 1306 1961 263 43 69 chr3 94513649 94513800 -65085983 - MTEa-int LTR MaLR -1432 148 3 3 1306 517 292 199 26 chr3 94513801 94514072 -65085711 - MTEa LTR MaLR -2 377 60 3 1306 261 246 0 55 chr3 94514307 94514320 -65085463 + B4A SINE B4 76 84 -208 4 1306 388 236 11 11 chr3 94514320 94514410 -65085373 + PB1D10 SINE Alu 1 90 -27 4 1306 210 37 0 0 chr3 94514420 94514447 -65085336 + (TAA)n Simple_repeat Simple_repeat 3 29 0 4 1306 247 180 0 0 chr3 94514456 94514506 -65085277 + L1MD2 LINE L1 5433 5482 -877 4 1306 324 0 0 0 chr3 94515087 94515123 -65084660 + (TTTTG)n Simple_repeat Simple_repeat 3 38 0 4 1306 1077 96 0 0 chr3 94515123 94515259 -65084524 - B1_Mus2 SINE Alu -10 137 2 4 1306 540 297 59 54 chr3 94515274 94515345 -65084438 + ID_B1 SINE B4 2 222 -1 4 1306 660 218 34 47 chr3 94515345 94515494 -65084289 + B1_Mur2 SINE Alu 3 149 0 4 1306 267 79 0 0 chr3 94515527 94515565 -65084218 + (TG)n Simple_repeat Simple_repeat 2 39 0 4 1306 625 305 50 35 chr3 94515644 94515926 -65083857 - B4A SINE B4 -6 286 1 4 1306 452 163 50 45 chr3 94516028 94516180 -65083603 + L1MD2 LINE L1 5729 5869 -295 4 1306 342 138 0 0 chr3 94516220 94516278 -65083505 + (TG)n Simple_repeat Simple_repeat 2 59 0 5 1306 718 204 146 7 chr3 94516302 94516501 -65083282 - MTD LTR MaLR 0 419 182 5 1306 1073 117 0 0 chr3 94516504 94516649 -65083134 - B1_Mm SINE Alu -1 146 2 5 1306 1049 111 0 0 chr3 94516701 94516845 -65082938 + B1_Mus2 SINE Alu 1 144 -3 5 1306 351 0 0 0 chr3 94517012 94517051 -65082732 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 5 1306 812 181 0 14 chr3 94517051 94517186 -65082597 - B1_Mus1 SINE Alu -10 138 6 5 1306 842 207 35 6 chr3 94517637 94517807 -65081976 - B3A SINE B2 -22 176 2 5 1306 605 222 29 29 chr3 94518602 94518676 -65081107 + B1_Mur1 SINE Alu 9 81 -68 5 1306 4556 68 0 31 chr3 94518676 94519282 -65080501 + LTRIS_Mus LTR ERV1 1 587 0 5 1306 605 222 29 29 chr3 94519282 94519346 -65080437 + B1_Mur1 SINE Alu 82 147 -2 5 1306 1135 51 0 7 chr3 94519349 94519487 -65080296 + B1_Mus2 SINE Alu 2 138 -9 5 1306 754 249 45 20 chr3 94519542 94519743 -65080040 + B3 SINE B2 3 208 -8 6 1306 251 167 62 0 chr3 94519743 94519791 -65079992 - RLTR42-int LTR ERVK -3647 1875 1825 6 1306 269 286 60 0 chr3 94520014 94520098 -65079685 - RLTR42-int LTR ERVK -3725 1797 1709 6 1306 360 0 0 0 chr3 94520263 94520303 -65079480 + (CA)n Simple_repeat Simple_repeat 2 41 0 6 1306 670 157 114 0 chr3 94520650 94520790 -65078993 - ORR1D1 LTR MaLR -9 365 210 6 1306 1961 263 43 69 chr3 94520809 94521278 -65078505 - MTEa-int LTR MaLR -973 607 149 6 1306 459 0 0 0 chr3 94521278 94521329 -65078454 + (CA)n Simple_repeat Simple_repeat 1 51 0 6 1306 1961 263 43 69 chr3 94521329 94521480 -65078303 - MTEa-int LTR MaLR -1432 148 3 6 1306 535 288 199 26 chr3 94521481 94521752 -65078031 - MTEa LTR MaLR -2 377 60 6 1306 261 246 0 55 chr3 94521987 94522000 -65077783 + B4A SINE B4 76 84 -208 6 1306 388 236 11 11 chr3 94522000 94522090 -65077693 + PB1D10 SINE Alu 1 90 -27 6 1306 210 37 0 0 chr3 94522100 94522127 -65077656 + (TAA)n Simple_repeat Simple_repeat 3 29 0 6 1306 247 180 0 0 chr3 94522136 94522186 -65077597 + L1MD LINE L1 5433 5482 -877 6 1306 234 0 0 0 chr3 94522767 94522793 -65076990 + (TTTTG)n Simple_repeat Simple_repeat 3 28 0 7 1306 1086 89 0 0 chr3 94522793 94522929 -65076854 - B1_Mus2 SINE Alu -10 137 2 7 1306 583 284 63 59 chr3 94522944 94523013 -65076770 + ID_B1 SINE B4 2 222 -1 7 1306 702 208 33 46 chr3 94523013 94523164 -65076619 + B1_Mur2 SINE Alu 1 149 0 7 1306 267 79 0 0 chr3 94523197 94523235 -65076548 + (TG)n Simple_repeat Simple_repeat 2 39 0 7 1306 344 333 57 38 chr3 94523314 94523473 -65076310 - B4A SINE B4 -6 286 125 7 1306 525 259 92 82 chr3 94523484 94523690 -65076093 + B3 SINE B2 3 210 -6 7 1306 306 300 30 0 chr3 94523697 94523797 -65075986 + MER5B DNA MER1_type 61 163 -15 7 1306 564 216 264 0 chr3 94524103 94524228 -65075555 + RSINE1 SINE B4 6 163 -2 7 1306 255 278 50 20 chr3 94524285 94524384 -65075399 + GA-rich Low_complexity Low_complexity 4 105 0 7 1306 770 253 40 0 chr3 94525210 94525384 -65074399 + B3 SINE B2 35 215 -1 8 1306 720 245 0 0 chr3 94525392 94525531 -65074252 + B1_Mur3 SINE Alu 1 139 -10 8 1306 225 132 0 0 chr3 94525533 94525571 -65074212 + (GA)n Simple_repeat Simple_repeat 1 38 0 8 1306 192 299 122 58 chr3 94526052 94526208 -65073575 - L2a LINE L2 -76 3350 3185 8 1306 484 189 22 0 chr3 94526289 94526379 -65073404 + B1_Mur4 SINE Alu 57 148 -2 8 1306 1088 88 0 0 chr3 94526434 94526581 -65073202 + B1_Mus1 SINE Alu 2 148 0 8 1306 225 0 0 0 chr3 94526581 94526606 -65073177 + (A)n Simple_repeat Simple_repeat 1 25 0 8 1306 353 318 78 15 chr3 94527315 94527519 -65072264 + L1M4 LINE L1 4147 4363 -1783 8 1306 497 314 45 48 chr3 94527533 94527824 -65071959 + B4A SINE B4 1 290 -2 8 1306 372 248 128 10 chr3 94527907 94528009 -65071774 + PB1D7 SINE Alu 5 118 -2 8 1306 427 269 54 47 chr3 94528019 94528167 -65071616 + B1F2 SINE Alu 1 149 0 9 1306 854 222 42 42 chr3 94528174 94528390 -65071393 + B3 SINE B2 1 216 0 9 1306 242 266 100 15 chr3 94528461 94528591 -65071192 + ORR1B1-int LTR MaLR 614 754 -755 9 1306 1005 60 8 0 chr3 94528497 94528631 -65071152 + B1_Mus1 SINE Alu 14 148 0 9 1306 909 227 72 0 chr3 94528700 94528894 -65070889 - B3 SINE B2 -7 209 2 9 1306 270 217 0 32 chr3 94528990 94529052 -65070731 + L1M4 LINE L1 4728 4787 -1359 8 1306 253 231 31 0 chr3 94529107 94529172 -65070611 + L1MA5 LINE L1 6233 6299 -1 9 1306 227 200 108 42 chr3 94529451 94529571 -65070212 + L1MB7 LINE L1 6057 6184 0 9 1306 39906 26 5 3 chr3 94529576 94535218 -65064565 - L1Md_T LINE L1 0 6582 980 9 1306 1270 58 98 0 chr3 94535218 94535237 -65064546 - B2_Mm1a SINE B2 -1 192 174 9 1306 360 0 0 0 chr3 94535237 94535277 -65064506 + (TTTA)n Simple_repeat Simple_repeat 1 40 0 9 1306 1270 58 98 0 chr3 94535277 94535431 -65064352 - B2_Mm1a SINE B2 -20 173 3 9 1306 7962 67 11 59 chr3 94535431 94536168 -65063615 - L1Md_T LINE L1 -5745 979 232 9 1306 893 241 5 10 chr3 94536172 94536377 -65063406 - B3 SINE B2 -10 206 3 1 1306 875 257 10 20 chr3 94536397 94536592 -65063191 - B3A SINE B2 -1 197 5 1 1306 387 0 0 0 chr3 94536745 94536788 -65062995 + (CA)n Simple_repeat Simple_repeat 1 43 0 1 1306 301 341 21 0 chr3 94537759 94537867 -65061916 - PB1D10 SINE Alu -5 115 1 1 1306 291 28 0 0 chr3 94537973 94538009 -65061774 + (CA)n Simple_repeat Simple_repeat 2 37 0 1 1306 366 239 22 22 chr3 94538014 94538104 -65061679 + PB1D10 SINE Alu 28 117 0 1 1306 251 172 0 94 chr3 94538591 94538655 -65061128 + B1_Mur1 SINE Alu 84 141 -8 1 1306 423 0 0 0 chr3 94538661 94538708 -65061075 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 1 1306 373 333 10 0 chr3 94538765 94538864 -65060919 + RSINE1 SINE B4 31 130 -35 1 1306 257 257 0 9 chr3 94538923 94539033 -65060750 + (TG)n Simple_repeat Simple_repeat 1 109 0 1 1306 336 242 40 90 chr3 94539033 94539133 -65060650 - B4A SINE B4 0 292 198 1 1306 398 167 48 0 chr3 94539116 94539200 -65060583 - B1_Mur2 SINE Alu -9 140 53 1 1306 540 250 157 34 chr3 94539193 94539371 -65060412 - B4A SINE B4 -62 230 31 1 1306 24 0 0 0 chr3 94539405 94539429 -65060354 + AT_rich Low_complexity Low_complexity 1 24 0 1 1306 1207 48 7 0 chr3 94539438 94539583 -65060200 - B1_Mus2 SINE Alu 0 147 2 1 1306 1132 193 19 0 chr3 94539590 94539802 -65059981 - B3 SINE B2 0 216 1 1 1306 246 315 65 65 chr3 94539931 94540070 -65059713 - RLTR25A LTR ERVK -444 659 521 1 1306 607 193 160 0 chr3 94539977 94540096 -65059687 - B1_Mur2 SINE Alu -2 147 10 1 1306 342 235 30 20 chr3 94540111 94540176 -65059607 - RCHARR1 DNA MER1_type -134 840 775 1 1306 338 250 143 0 chr3 94540176 94540260 -65059523 + MTE2a LTR MaLR 1 96 -283 1 1306 340 187 133 2 chr3 94540259 94540342 -65059441 + B1F2 SINE Alu 10 99 -18 1 1306 639 307 29 41 chr3 94540341 94540406 -65059377 + ID SINE ID 19 81 -143 1 1306 393 278 55 83 chr3 94540406 94540551 -65059232 + B1F SINE Alu 3 143 -6 1 1306 443 133 78 0 chr3 94540552 94540642 -65059141 + L1MD LINE L1 3318 3414 -2732 1 1306 465 219 274 0 chr3 94540870 94541034 -65058749 - B3 SINE B2 -6 210 2 1 1306 296 247 92 46 chr3 94541051 94541225 -65058558 + L1MD1 LINE L1 5781 5962 -280 1 1306 1027 129 6 6 chr3 94541801 94541980 -65057803 + (GA)n Simple_repeat Simple_repeat 2 180 0 1 1306 306 115 0 0 chr3 94541980 94542032 -65057751 + (GAAA)n Simple_repeat Simple_repeat 3 54 0 1 1306 1153 68 0 0 chr3 94542268 94542414 -65057369 - B1_Mus2 SINE Alu 0 147 2 1 1306 1370 86 0 5 chr3 94542454 94542641 -65057142 - B2_Mm2 SINE B2 -8 187 2 1 1306 282 182 0 0 chr3 94542847 94542913 -65056870 + (CA)n Simple_repeat Simple_repeat 1 66 0 1 1306 871 188 109 50 chr3 94542946 94543148 -65056635 + B3 SINE B2 3 216 0 1 1306 932 263 48 14 chr3 94543318 94543526 -65056257 + ID_B1 SINE B4 3 217 -7 1 1306 1100 104 30 12 chr3 94543537 94543702 -65056081 + B2_Mm2 SINE B2 2 169 -26 1 1306 483 130 0 0 chr3 94543715 94543792 -65055991 + (TA)n Simple_repeat Simple_repeat 2 78 0 1 1306 834 241 35 0 chr3 94543837 94544011 -65055772 - B3 SINE B2 -4 212 33 1 1306 715 179 17 8 chr3 94544025 94544143 -65055640 + B1_Mur1 SINE Alu 23 141 -8 1 1306 553 238 16 0 chr3 94544184 94544310 -65055473 + Lx8 LINE L1 6983 7110 -363 1 1306 240 275 142 39 chr3 94544348 94544403 -65055380 + Lx8 LINE L1 7301 7365 -108 1 1306 1053 126 198 11 chr3 94544403 94544580 -65055203 + B3 SINE B2 1 210 -6 1 1306 240 275 142 39 chr3 94544580 94544679 -65055104 + Lx8 LINE L1 7366 7471 -2 1 1306 1164 49 7 0 chr3 94544758 94544901 -65054882 - B1_Mm SINE Alu -2 145 2 1 1306 497 289 0 57 chr3 94544965 94544981 -65054802 - B1_Mur1 SINE Alu 0 149 137 1 1306 354 45 0 0 chr3 94544981 94545025 -65054758 + (TTTTG)n Simple_repeat Simple_repeat 3 46 0 1 1306 497 289 0 57 chr3 94545025 94545166 -65054617 - B1_Mur1 SINE Alu -13 136 1 1 1306 457 181 123 9 chr3 94545328 94545434 -65054349 - PB1D9 SINE Alu -1 119 2 1 1306 1265 105 6 0 chr3 94545554 94545726 -65054057 + B2_Mm2 SINE B2 2 174 -21 1 1306 1086 189 5 36 chr3 94545856 94546076 -65053707 + B3 SINE B2 1 213 -3 1 1306 288 258 91 118 chr3 94546111 94546221 -65053562 + B1F SINE Alu 13 119 -1 1 1306 316 263 197 0 chr3 94546331 94546468 -65053315 - MIR SINE MIR -43 219 56 1 1306 501 110 13 27 chr3 94546768 94546843 -65052940 + ID_B1 SINE B4 135 208 -16 1 1306 1021 226 76 33 chr3 94546991 94547266 -65052517 - B4 SINE B4 -4 288 2 1 1306 315 104 0 0 chr3 94547327 94547375 -65052408 + (GGGGA)n Simple_repeat Simple_repeat 5 52 0 1 1306 238 307 114 0 chr3 94547558 94547646 -65052137 - B1F SINE Alu -27 122 25 1 1306 337 253 232 25 chr3 94547560 94547724 -65052059 - ID_B1 SINE B4 -26 198 1 1 1306 1476 33 54 5 chr3 94547753 94547938 -65051845 + B2_Mm2 SINE B2 2 195 0 1 1306 485 240 43 49 chr3 94547947 94548131 -65051652 + L1MB8 LINE L1 5627 5809 -375 1 1306 268 204 0 18 chr3 94548134 94548189 -65051594 + B4 SINE B4 80 133 -159 1 1306 643 177 97 30 chr3 94548145 94548279 -65051504 + B1_Mus1 SINE Alu 6 148 0 1 1306 821 289 57 23 chr3 94548295 94548646 -65051137 + L1MB8 LINE L1 5815 6177 -1 1 1306 1070 194 48 5 chr3 94548699 94548906 -65050877 - B3 SINE B2 0 216 1 1 1306 205 254 34 0 chr3 94549060 94549106 -65050677 + polypurine Low_complexity Low_complexity 3 50 0 1 1306 690 238 13 39 chr3 94549106 94549259 -65050524 + B1_Mur2 SINE Alu 1 149 0 1 1306 205 254 34 0 chr3 94549259 94549271 -65050512 + polypurine Low_complexity Low_complexity 51 62 0 1 1306 2041 118 10 22 chr3 94549271 94549528 -65050255 - RLTR27 LTR ERVK 0 309 59 1 1306 2158 91 39 0 chr3 94549528 94549836 -65049947 - RLTR46 LTR ERVK 0 320 1 1 1306 2041 118 10 22 chr3 94549836 94549891 -65049892 - RLTR27 LTR ERVK -251 58 1 1 1306 1326 130 123 25 chr3 94549891 94550127 -65049656 - MMERVK10C-int LTR ERVK -2 7579 7321 1 1306 357 325 29 17 chr3 94550252 94550424 -65049359 - MMERVK10C-int LTR ERVK -501 7080 6907 1 1306 7851 299 33 41 chr3 94550430 94554397 -65045386 - MMERVK10C-int LTR ERVK -2099 5482 1545 1 1306 229 321 71 43 chr3 94554403 94554543 -65045240 - MER54B LTR ERVL -117 676 533 1 1306 445 311 47 35 chr3 94554565 94554824 -65044959 - MMERVK10C-int LTR ERVK -5622 920 704 1 1306 266 263 0 0 chr3 94554958 94555034 -65044749 - IAPLTR4_I LTR ERVK -530 940 865 1 1306 240 268 0 35 chr3 94555092 94555177 -65044606 + T-rich Low_complexity Low_complexity 2 83 0 1 1306 1447 169 131 4 chr3 94555221 94555495 -65044288 - RLTR27 LTR ERVK 0 309 1 1 1306 545 76 13 0 chr3 94555500 94555579 -65044204 + (GGGGA)n Simple_repeat Simple_repeat 4 83 0 1 1306 245 286 38 54 chr3 94555686 94555871 -65043912 + RMER17C LTR ERVK 97 278 -132 1 1306 731 108 14 35 chr3 94555873 94556017 -65043766 + GA-rich Low_complexity Low_complexity 2 142 0 1 1306 525 267 30 0 chr3 94556242 94556373 -65043410 + B1F1 SINE Alu 4 138 -11 1 1306 286 185 0 53 chr3 94556407 94556464 -65043319 + B4A SINE B4 19 72 -220 1 1306 551 255 60 13 chr3 94556608 94556759 -65043024 - MIR SINE MIR 0 262 105 1 1306 531 205 282 0 chr3 94556836 94556992 -65042791 - ID_B1 SINE B4 -4 220 21 1 1306 27 0 0 0 chr3 94557085 94557112 -65042671 + AT_rich Low_complexity Low_complexity 1 27 0 1 1306 321 310 0 0 chr3 94557193 94557264 -65042519 + tRNA-Ala-GCY_ tRNA tRNA 1 71 -4 1 1306 541 289 60 0 chr3 94557294 94557443 -65042340 + ID_B1 SINE B4 2 159 -65 1 1306 390 320 160 0 chr3 94557511 94557636 -65042147 + RSINE1 SINE B4 2 146 -19 1 1306 239 227 79 35 chr3 94557652 94557766 -65042017 + HAL1 LINE L1 2273 2391 -116 1 1306 345 250 77 0 chr3 94557866 94557970 -65041813 + PB1D10 SINE Alu 6 117 0 1 1306 786 270 48 14 chr3 94558009 94558216 -65041567 - B3 SINE B2 -1 215 2 1 1306 1596 42 21 0 chr3 94558253 94558442 -65041341 + B2_Mm1t SINE B2 1 193 0 1 1306 1193 41 7 0 chr3 94558462 94558608 -65041175 + B1_Mus2 SINE Alu 1 147 0 1 1306 805 214 21 0 chr3 94559326 94559471 -65040312 - B1_Mur1 SINE Alu 0 149 2 1 1306 416 232 0 47 chr3 94559560 94559646 -65040137 + ID SINE ID 1 82 -142 1 1306 259 258 20 92 chr3 94559646 94559658 -65040125 + B3A SINE B2 1 91 -107 1 1306 1174 68 0 20 chr3 94559939 94560089 -65039694 - B1_Mus1 SINE Alu 0 148 2 1 1306 1207 112 0 6 chr3 94560295 94560466 -65039317 + B2_Mm2 SINE B2 1 170 -25 1 1306 243 61 0 0 chr3 94560892 94560925 -65038858 + (G)n Simple_repeat Simple_repeat 1 33 0 1 1306 189 0 0 0 chr3 94561336 94561357 -65038426 + (A)n Simple_repeat Simple_repeat 1 21 0 1 1306 1133 62 7 0 chr3 94562681 94562826 -65036957 + B1_Mus2 SINE Alu 2 147 0 1 1306 231 114 0 0 chr3 94562826 94562861 -65036922 + (A)n Simple_repeat Simple_repeat 1 35 0 1 1306 1156 218 162 31 chr3 94563263 94563590 -65036193 + ORR1D2 LTR MaLR 1 370 0 1 1306 585 250 19 65 chr3 94563749 94563903 -65035880 + RSINE1 SINE B4 18 164 -1 1 1306 183 156 0 0 chr3 94563911 94563943 -65035840 + A-rich Low_complexity Low_complexity 1 32 0 1 1306 26 0 0 0 chr3 94564007 94564033 -65035750 + AT_rich Low_complexity Low_complexity 1 26 0 1 1306 313 292 16 3 chr3 94566025 94566117 -65033666 + B4 SINE B4 1 93 -199 1 1306 238 292 40 53 chr3 94566206 94566282 -65033501 + RSINE1 SINE B4 90 164 -1 1 1306 228 304 125 19 chr3 94567339 94567443 -65032340 + MTE2b LTR MaLR 191 305 -74 1 1306 802 270 106 8 chr3 94567443 94567678 -65032105 + MTE-int LTR MaLR 958 1215 -365 1 1306 568 220 175 51 chr3 94567682 94567859 -65031924 + MTE-int LTR MaLR 1367 1565 -15 1 1306 677 190 21 35 chr3 94567862 94568004 -65031779 + B1_Mur1 SINE Alu 8 147 -2 1 1306 561 276 50 30 chr3 94568869 94569067 -65030716 + MIR SINE MIR 1 202 -60 2 1306 232 297 0 114 chr3 94569652 94569766 -65030017 - MER97c DNA MER1_type? -911 179 79 2 1306 384 213 83 21 chr3 94569821 94569917 -65029866 + PB1D9 SINE Alu 18 119 -1 2 1306 529 207 62 10 chr3 94570009 94570149 -65029634 + PB1D9 SINE Alu 7 147 -3 2 1306 279 208 0 36 chr3 94570136 94570191 -65029592 - MER5B DNA MER1_type -125 53 1 2 1306 358 270 80 7 chr3 94571406 94571544 -65028239 + MIR SINE MIR 100 247 -15 2 1306 4646 173 54 19 chr3 94571669 94572522 -65027261 + Lx5 LINE L1 6165 7047 -3 2 1306 762 233 13 20 chr3 94572536 94572685 -65027098 + B3A SINE B2 27 174 -24 2 1306 845 171 0 46 chr3 94572716 94572869 -65026914 + B1_Mur3 SINE Alu 3 148 -1 2 1306 221 40 19 74 chr3 94572869 94572923 -65026860 + (CAAA)n Simple_repeat Simple_repeat 1 51 0 2 1306 522 234 133 0 chr3 94573429 94573557 -65026226 + B1_Mur1 SINE Alu 5 149 0 2 1306 393 337 48 16 chr3 94574686 94574936 -65024847 + L1MB7 LINE L1 5510 5767 -417 2 1306 727 242 13 0 chr3 94574945 94575098 -65024685 + ID_B1 SINE B4 64 218 -6 2 1306 531 301 132 11 chr3 94575135 94575407 -65024376 + L1MB7 LINE L1 5838 6142 -42 2 1306 662 184 44 0 chr3 94575408 94575522 -65024261 + PB1D9 SINE Alu 2 120 0 2 1306 243 0 0 0 chr3 94576063 94576090 -65023693 + (TTTTTG)n Simple_repeat Simple_repeat 6 32 0 2 1306 743 185 22 7 chr3 94576133 94576269 -65023514 - B1_Mur2 SINE Alu -10 139 2 2 1306 492 312 158 0 chr3 94576586 94576826 -65022957 + MamRep605 Unknown Unknown 544 821 -55 2 1306 204 40 0 0 chr3 94577629 94577654 -65022129 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 2 1306 1274 74 0 0 chr3 94577654 94577816 -65021967 - B2_Mm2 SINE B2 -33 162 1 2 1306 450 0 0 0 chr3 94578413 94578463 -65021320 + (TAAA)n Simple_repeat Simple_repeat 3 52 0 2 1306 637 221 8 0 chr3 94579191 94579318 -65020465 - RSINE1 SINE B4 -35 130 3 2 1306 1313 88 11 21 chr3 94579363 94579550 -65020233 + B2_Mm1t SINE B2 1 185 -8 2 1306 275 222 13 53 chr3 94579774 94579850 -65019933 - MIR SINE MIR -64 204 125 2 1306 548 230 7 80 chr3 94580204 94580341 -65019442 + B1F1 SINE Alu 7 133 -16 2 1306 189 0 0 0 chr3 94580341 94580362 -65019421 + (CAAT)n Simple_repeat Simple_repeat 4 24 0 2 1306 266 362 78 8 chr3 94580405 94580533 -65019250 + MLT1F1 LTR MaLR 433 569 0 2 1306 258 336 106 28 chr3 94580533 94580674 -65019109 - MIR SINE MIR -110 152 1 2 1306 897 240 37 7 chr3 94580771 94580986 -65018797 + ID_B1 SINE B4 1 225 -67 2 1306 1006 278 0 0 chr3 94581261 94581473 -65018310 - ID_B1 SINE B4 -2 222 11 2 1306 288 307 0 13 chr3 94581405 94581481 -65018302 - BC1_Mm scRNA scRNA -75 77 3 2 1306 233 263 47 104 chr3 94581695 94581801 -65017982 + MT2B2 LTR ERVL 154 253 -331 2 1306 335 252 33 83 chr3 94581714 94581835 -65017948 + PB1D9 SINE Alu 6 120 0 2 1306 206 250 36 0 chr3 94582403 94582459 -65017324 + GA-rich Low_complexity Low_complexity 1 58 0 2 1306 455 264 26 26 chr3 94584094 94584207 -65015576 - MER5A DNA MER1_type -70 119 7 2 1306 349 284 0 0 chr3 94584207 94584288 -65015495 + ID4 SINE ID 3 83 0 2 1306 238 246 197 0 chr3 94584724 94584785 -65014998 + ID2 SINE ID 2 74 -9 2 1306 830 248 82 5 chr3 94584834 94585041 -65014742 - ID_B1 SINE B4 0 224 2 2 1306 1491 133 0 13 chr3 94585725 94585953 -65013830 + URR1B DNA MER1_type 1 225 0 2 1306 493 172 75 23 chr3 94585981 94586080 -65013703 + PB1D7 SINE Alu 17 118 -2 2 1306 207 0 0 0 chr3 94586156 94586179 -65013604 + (A)n Simple_repeat Simple_repeat 1 23 0 2 1306 401 164 15 0 chr3 94586281 94586348 -65013435 - ID_B1 SINE B4 0 224 157 2 1306 216 267 73 65 chr3 94586751 94586875 -65012908 + L2c LINE L2 3193 3317 -70 2 1306 193 75 24 24 chr3 94587947 94587988 -65011795 + (CAAAA)n Simple_repeat Simple_repeat 2 42 0 2 1306 704 43 75 0 chr3 94589126 94589219 -65010564 + B2_Mm2 SINE B2 2 101 -94 2 1306 180 0 0 0 chr3 94589244 94589264 -65010519 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 2 1306 445 245 47 0 chr3 94589379 94589485 -65010298 + ID_B1 SINE B4 86 196 -28 2 1306 262 214 71 0 chr3 94589460 94589530 -65010253 + B1_Mur1 SINE Alu 65 139 -10 2 1306 358 222 44 0 chr3 94591038 94591128 -65008655 + L2a LINE L2 3331 3424 -2 2 1306 189 300 50 0 chr3 94591209 94591269 -65008514 + L2 LINE L2 1928 1990 -1429 2 1306 735 62 0 0 chr3 94591630 94591727 -65008056 + (GA)n Simple_repeat Simple_repeat 1 97 0 2 1306 322 243 0 28 chr3 94592134 94592206 -65007577 + B1F2 SINE Alu 58 127 -22 2 1306 1291 69 57 0 chr3 94592601 94592776 -65007007 - B2_Mm2 SINE B2 -9 186 2 2 1306 857 100 8 0 chr3 94592804 94592934 -65006849 + (GAAA)n Simple_repeat Simple_repeat 2 132 0 2 1306 240 296 27 0 chr3 94592984 94593057 -65006726 + ID4_ SINE ID 4 82 -70 2 1306 2221 86 79 0 chr3 94593239 94593542 -65006241 - ORR1A2 LTR MaLR 0 327 1 2 1306 2680 148 22 128 chr3 94593751 94593837 -65005946 - RLTR24 LTR ERV1 -2 527 451 2 1306 1161 68 0 13 chr3 94593837 94593987 -65005796 - B1_Mus1 SINE Alu 0 148 1 2 1306 2680 148 22 128 chr3 94593987 94594488 -65005295 - RLTR24 LTR ERV1 -79 450 2 2 1306 509 296 20 7 chr3 94594583 94594729 -65005054 - B1F SINE Alu -1 148 1 2 1306 548 269 7 51 chr3 94594849 94594964 -65004819 + B1F SINE Alu 18 126 -23 2 1306 1759 177 91 3 chr3 94594964 94595304 -65004479 + ORR1D1 LTR MaLR 5 374 0 2 1306 548 269 7 51 chr3 94595304 94595325 -65004458 + B1F SINE Alu 127 148 -1 2 1306 377 192 82 55 chr3 94595666 94595776 -65004007 + PB1D9 SINE Alu 1 113 -7 2 1306 709 296 113 19 chr3 94596580 94596845 -65002938 + B4 SINE B4 2 291 -1 2 1306 315 363 83 65 chr3 94596945 94597292 -65002491 + LTR16B1 LTR ERVL 93 476 -4 2 1306 267 119 0 0 chr3 94597340 94597382 -65002401 + PB1D9 SINE Alu 79 120 0 2 1306 1242 100 0 0 chr3 94597386 94597566 -65002217 + (GAGAA)n Simple_repeat Simple_repeat 1 180 0 2 1306 452 229 35 52 chr3 94597573 94597688 -65002095 + PB1 SINE Alu 13 125 -2 2 1306 497 278 27 59 chr3 94597846 94598033 -65001750 + HERV16-int LTR ERVL 268 448 -4548 2 1306 288 321 9 19 chr3 94598248 94598356 -65001427 + HERV16-int LTR ERVL 754 860 -4136 2 1306 489 223 149 131 chr3 94598447 94598844 -65000939 + RMER10A LTR ERVL 15 418 -24 2 1306 858 54 0 0 chr3 94598896 94599008 -65000775 + (TG)n Simple_repeat Simple_repeat 1 112 0 2 1306 265 250 17 0 chr3 94599035 94599095 -65000688 - B2_Mm2 SINE B2 -69 126 66 2 1306 1376 82 0 35 chr3 94599246 94599448 -65000335 - B2_Mm2 SINE B2 0 195 1 2 1306 191 36 36 0 chr3 94599452 94599480 -65000303 + (TTG)n Simple_repeat Simple_repeat 2 30 0 2 1306 696 257 0 7 chr3 94599486 94599627 -65000156 - ID_B1 SINE B4 -2 222 83 2 1306 285 280 0 31 chr3 94600049 94600136 -64999647 + B4A SINE B4 25 102 -190 2 1306 233 143 0 0 chr3 94600138 94600173 -64999610 + tRNA-Gly-GGA tRNA tRNA 4 38 -37 2 1306 834 251 55 5 chr3 94600157 94600357 -64999426 + B4A SINE B4 68 277 -15 2 1306 350 245 82 0 chr3 94600951 94601049 -64998734 + PB1D9 SINE Alu 2 107 -13 2 1306 221 0 35 0 chr3 94601049 94601078 -64998705 + (CAAA)n Simple_repeat Simple_repeat 1 30 0 2 1306 415 271 57 33 chr3 94601225 94601347 -64998436 + RSINE1 SINE B4 2 126 -39 2 1306 213 39 0 0 chr3 94601541 94601567 -64998216 + (GAAAA)n Simple_repeat Simple_repeat 5 30 0 2 1306 502 207 14 0 chr3 94601801 94601897 -64997886 + B1F1 SINE Alu 1 106 -14 2 1306 1261 34 0 0 chr3 94601942 94602089 -64997694 + B1_Mus2 SINE Alu 1 147 0 2 1306 1330 105 21 0 chr3 94602293 94602483 -64997300 + B2_Mm2 SINE B2 1 194 -1 2 1306 294 87 0 0 chr3 94602493 94602539 -64997244 + (CAAGA)n Simple_repeat Simple_repeat 2 47 0 2 1306 337 261 137 32 chr3 94602573 94602668 -64997115 + RSINE1 SINE B4 44 148 -17 2 1306 267 103 0 0 chr3 94602669 94602708 -64997075 + (T)n Simple_repeat Simple_repeat 1 39 0 2 1306 1146 62 14 0 chr3 94602708 94602852 -64996931 - B1_Mus2 SINE Alu 0 147 2 2 1306 956 147 0 0 chr3 94602934 94603077 -64996706 + B1_Mur4 SINE Alu 2 144 -6 2 1306 286 226 32 0 chr3 94603102 94603164 -64996619 + PB1D10 SINE Alu 2 65 -52 2 1306 313 370 68 6 chr3 94603277 94603440 -64996343 + LTR16B1 LTR ERVL 99 271 -209 2 1306 751 169 80 14 chr3 94603603 94603741 -64996042 - B1_Mus2 SINE Alu 0 147 1 2 1306 260 143 60 20 chr3 94604000 94604040 -64995743 + B2_Mm2 SINE B2 2 40 -155 2 1306 1009 122 0 20 chr3 94604040 94604190 -64995593 + B1_Mus1 SINE Alu 1 147 -1 2 1306 588 265 198 9 chr3 94604302 94604519 -64995264 - MLT1D LTR MaLR 0 505 248 2 1306 1153 204 151 31 chr3 94604524 94604849 -64994934 + MER57D LTR ERV1 1 387 -24 2 1306 591 27 0 0 chr3 94604955 94605028 -64994755 + (TC)n Simple_repeat Simple_repeat 2 74 0 2 1306 678 237 7 0 chr3 94605028 94605163 -64994620 - B1F SINE Alu -8 141 6 2 1306 398 279 9 0 chr3 94605168 94605279 -64994504 - MLT1D LTR MaLR -385 120 9 2 1306 320 189 42 42 chr3 94605321 94605393 -64994390 + PB1D10 SINE Alu 7 78 -39 2 1306 317 223 0 11 chr3 94605413 94605508 -64994275 + CT-rich Low_complexity Low_complexity 3 96 0 2 1306 207 0 0 0 chr3 94605548 94605571 -64994212 + (GA)n Simple_repeat Simple_repeat 1 23 0 2 1306 237 175 0 0 chr3 94605571 94605611 -64994172 - PB1D9 SINE Alu -20 100 61 2 1306 444 278 4 8 chr3 94606017 94606129 -64993654 + PB1D7 SINE Alu 1 113 -7 3 1306 211 324 166 0 chr3 94606129 94606154 -64993629 + B4A SINE B4 112 245 -47 3 1306 598 236 0 119 chr3 94606153 94606312 -64993471 + RSINE1 SINE B4 26 165 0 3 1306 244 195 0 0 chr3 94606385 94606426 -64993357 + B3 SINE B2 2 42 -174 3 1306 720 0 0 0 chr3 94606430 94606510 -64993273 + (TTC)n Simple_repeat Simple_repeat 3 82 0 3 1306 1009 73 73 0 chr3 94606534 94606670 -64993113 - B1_Mus1 SINE Alu 0 148 3 3 1306 608 243 38 75 chr3 94606674 94606834 -64992949 + B3 SINE B2 29 182 -34 3 1306 1291 62 0 11 chr3 94606853 94607033 -64992750 + (GAA)n Simple_repeat Simple_repeat 3 180 0 3 1306 241 279 15 0 chr3 94607657 94607725 -64992058 + ID4 SINE ID 10 78 -5 3 1306 192 299 38 38 chr3 94608478 94608558 -64991225 - L2a LINE L2 -8 3418 3339 3 1306 239 206 315 0 chr3 94609095 94609168 -64990615 + PB1D7 SINE Alu 1 96 -24 3 1306 621 257 93 57 chr3 94609176 94609370 -64990413 + B3 SINE B2 1 201 -15 3 1306 604 169 0 13 chr3 94609371 94609527 -64990256 + (TA)n Simple_repeat Simple_repeat 1 154 0 3 1306 569 208 9 0 chr3 94609701 94609807 -64989976 + B3 SINE B2 106 212 -4 3 1306 556 229 80 105 chr3 94609839 94610039 -64989744 + B3A SINE B2 4 198 0 3 1306 287 210 171 74 chr3 94610466 94610543 -64989240 + L1MC3 LINE L1 7503 7577 -208 3 1306 878 205 33 42 chr3 94610543 94610757 -64989026 + B3 SINE B2 1 212 -4 3 1306 287 210 171 74 chr3 94610757 94610854 -64988929 + L1MC3 LINE L1 7578 7694 -91 3 1306 405 261 26 26 chr3 94610854 94610968 -64988815 + PB1D10 SINE Alu 1 114 -3 3 1306 689 195 0 16 chr3 94610982 94611107 -64988676 + ID_B1 SINE B4 78 200 -24 3 1306 301 328 32 8 chr3 94611370 94611496 -64988287 + L1MC LINE L1 5346 5474 -2408 3 1306 1202 191 4 49 chr3 94611803 94612029 -64987754 - B3 SINE B2 0 216 1 3 1306 300 306 30 10 chr3 94612065 94612164 -64987619 - B1F2 SINE Alu -46 103 3 3 1306 1397 77 5 11 chr3 94612317 94612502 -64987281 + B2_Mm2 SINE B2 2 185 -10 3 1306 483 262 79 30 chr3 94612628 94612793 -64986990 - MER45A DNA Tip100 0 178 6 3 1306 706 292 141 47 chr3 94612818 94613181 -64986602 - MER82 DNA MER2_type -12 641 245 3 1306 444 195 34 11 chr3 94613279 94613367 -64986416 + PB1D7 SINE Alu 23 112 -8 3 1306 708 127 86 16 chr3 94613384 94613512 -64986271 - B1_Mus1 SINE Alu -2 146 10 3 1306 460 308 133 0 chr3 94613543 94613686 -64986097 - RSINE1 SINE B4 0 165 4 3 1306 567 194 36 36 chr3 94613730 94613842 -64985941 + PB1D9 SINE Alu 1 112 -8 3 1306 201 74 0 0 chr3 94613842 94613869 -64985914 + (CAGA)n Simple_repeat Simple_repeat 4 30 0 3 1306 879 224 8 46 chr3 94614018 94614139 -64985644 + B4A SINE B4 5 124 -168 3 1306 378 0 0 0 chr3 94614139 94614181 -64985602 + (TG)n Simple_repeat Simple_repeat 2 43 0 3 1306 879 224 8 46 chr3 94614181 94614298 -64985485 + B4A SINE B4 125 233 -59 3 1306 234 274 48 0 chr3 94614361 94614423 -64985360 + B4 SINE B4 109 173 -119 3 1306 418 14 70 0 chr3 94614434 94614505 -64985278 + (CA)n Simple_repeat Simple_repeat 2 77 0 3 1306 230 196 21 21 chr3 94614509 94614556 -64985227 + B4A SINE B4 238 284 -8 3 1306 2702 148 158 84 chr3 94614717 94614773 -64985010 - RMER19C LTR ERVK 0 611 571 3 1306 1500 48 16 11 chr3 94614773 94614963 -64984820 + B2_Mm2 SINE B2 2 192 -3 3 1306 2702 148 158 84 chr3 94614963 94615475 -64984308 - RMER19C LTR ERVK -41 570 1 3 1306 278 0 0 51 chr3 94615485 94615524 -64984259 + (TTTTTG)n Simple_repeat Simple_repeat 6 42 0 3 1306 805 171 50 0 chr3 94615524 94615664 -64984119 - B1_Mus2 SINE Alu 0 147 1 3 1306 311 152 478 0 chr3 94615724 94615835 -64983948 - B3 SINE B2 -33 165 2 3 1306 762 152 14 43 chr3 94616471 94616609 -64983174 + B1_Mur3 SINE Alu 6 139 -10 3 1306 205 321 75 0 chr3 94616626 94616732 -64983051 - MIR SINE MIR -18 244 131 3 1306 1034 74 7 0 chr3 94616796 94616945 -64982838 + B2_Mm1t SINE B2 37 186 -7 3 1306 952 144 189 0 chr3 94616973 94617153 -64982630 - B3 SINE B2 -1 215 2 3 1306 645 213 71 0 chr3 94617183 94617310 -64982473 - B1_Mur1 SINE Alu -13 136 1 3 1306 324 0 0 0 chr3 94617339 94617375 -64982408 + (TATG)n Simple_repeat Simple_repeat 3 38 0 3 1306 257 224 0 49 chr3 94617379 94617440 -64982343 - ID4_ SINE ID -11 72 15 3 1306 187 234 234 0 chr3 94617907 94617984 -64981799 - MIR SINE MIR -154 108 14 3 1306 341 231 144 0 chr3 94618629 94618733 -64981050 - RSINE1 SINE B4 -45 120 2 3 1306 264 279 134 14 chr3 94618815 94618957 -64980826 - MIR SINE MIR -5 257 99 3 1306 258 125 0 0 chr3 94619071 94619127 -64980656 + B2_Mm1t SINE B2 138 193 0 3 1306 462 114 0 0 chr3 94619127 94619197 -64980586 + (GGAA)n Simple_repeat Simple_repeat 4 73 0 3 1306 305 146 0 0 chr3 94619198 94619253 -64980530 + B3A SINE B2 1 55 -143 3 1306 918 123 0 0 chr3 94619257 94619325 -64980458 + (GAAA)n Simple_repeat Simple_repeat 4 71 0 3 1306 1627 47 0 0 chr3 94619325 94619516 -64980267 + B2_Mm1a SINE B2 1 191 -2 3 1306 918 123 0 0 chr3 94619516 94619593 -64980190 + (GAAA)n Simple_repeat Simple_repeat 4 80 0 3 1306 1011 207 19 14 chr3 94619594 94619805 -64979978 + B3 SINE B2 5 216 0 3 1306 338 195 176 50 chr3 94620128 94620247 -64979536 - B3A SINE B2 -4 191 58 3 1306 403 202 11 0 chr3 94620277 94620366 -64979417 - B3 SINE B2 0 216 127 3 1306 397 379 19 19 chr3 94620361 94620576 -64979207 - B4A SINE B4 -28 264 50 3 1306 274 253 62 25 chr3 94620651 94620732 -64979051 + B3 SINE B2 118 201 -15 3 1306 836 149 50 0 chr3 94620732 94620873 -64978910 + B1_Mur4 SINE Alu 3 150 0 3 1306 185 0 40 0 chr3 94620877 94620902 -64978881 + (CAA)n Simple_repeat Simple_repeat 2 27 0 3 1306 1440 90 16 0 chr3 94620966 94621154 -64978629 - B2_Mm2 SINE B2 -3 192 2 3 1306 537 195 41 12 chr3 94621168 94621309 -64978474 - ORR1D2 LTR MaLR -233 141 1 3 1306 1567 168 75 12 chr3 94621309 94621640 -64978143 - ORR1D2-int LTR MaLR 0 1370 1019 3 1306 740 245 35 5 chr3 94621963 94621995 -64977788 - ORR1D2-int LTR MaLR -319 1051 1018 3 1306 342 0 0 0 chr3 94621995 94622033 -64977750 + (CA)n Simple_repeat Simple_repeat 1 38 0 3 1306 740 245 35 5 chr3 94622033 94622197 -64977586 - ORR1D2-int LTR MaLR -353 1017 850 3 1306 776 84 0 0 chr3 94622188 94622295 -64977488 - ORR1A3 LTR MaLR -8 318 212 3 1306 277 98 0 0 chr3 94622295 94622336 -64977447 + ORR1C2 LTR MaLR 344 384 0 3 1306 307 222 23 69 chr3 94622724 94622811 -64976972 + B1_Mur2 SINE Alu 59 141 -8 3 1306 331 312 181 11 chr3 94622823 94623011 -64976772 - Charlie13a DNA Charlie -343 1171 952 3 1306 356 167 103 47 chr3 94623123 94623230 -64976553 + PB1D10 SINE Alu 5 117 0 3 1306 233 243 26 103 chr3 94623249 94623327 -64976456 + ID2 SINE ID 12 83 0 3 1306 1316 283 108 29 chr3 94623384 94624075 -64975708 - Charlie13a DNA Charlie -739 775 30 3 1306 1634 27 16 0 chr3 94624241 94624427 -64975356 + B2_Mm1t SINE B2 1 189 -4 3 1306 293 275 25 0 chr3 94626093 94626173 -64973610 - ID4 SINE ID 0 83 2 3 1306 234 0 0 0 chr3 94626204 94626230 -64973553 + (A)n Simple_repeat Simple_repeat 1 26 0 3 1306 253 24 48 24 chr3 94626679 94626721 -64973062 + (TTTTA)n Simple_repeat Simple_repeat 3 45 0 3 1306 1238 27 0 0 chr3 94626721 94626867 -64972916 - B1_Mus2 SINE Alu 0 147 2 3 1306 897 265 18 5 chr3 94626870 94627090 -64972693 - ID_B1 SINE B4 0 224 2 3 1306 692 247 99 26 chr3 94627094 94627133 -64972650 - B3 SINE B2 -10 206 156 3 1306 255 125 0 0 chr3 94627133 94627173 -64972610 + (CA)n Simple_repeat Simple_repeat 1 40 0 3 1306 692 247 99 26 chr3 94627173 94627324 -64972459 - B3 SINE B2 -61 155 2 3 1306 688 31 10 0 chr3 94627345 94627442 -64972341 - L1Md_F2 LINE L1 -2 6580 6483 3 1306 1210 41 7 0 chr3 94627549 94627694 -64972089 + B1_Mm SINE Alu 2 147 0 3 1306 180 125 0 0 chr3 94627694 94627726 -64972057 + (CAAAAA)n Simple_repeat Simple_repeat 5 36 0 3 1306 218 188 0 0 chr3 94627835 94627883 -64971900 + (CTG)n Simple_repeat Simple_repeat 2 49 0 3 1306 1405 61 50 0 chr3 94627885 94628066 -64971717 - B2_Mm2 SINE B2 -5 190 1 3 1306 682 280 11 0 chr3 94628117 94628299 -64971484 + B3A SINE B2 1 184 -14 3 1306 25 0 0 0 chr3 94628326 94628351 -64971432 + AT_rich Low_complexity Low_complexity 1 25 0 3 1306 415 307 24 63 chr3 94628538 94628743 -64971040 - B3A SINE B2 0 198 2 3 1306 237 209 0 0 chr3 94628931 94628974 -64970809 + RSINE1 SINE B4 112 154 -11 3 1306 875 118 82 0 chr3 94628999 94629125 -64970658 + B1_Mus1 SINE Alu 2 138 -10 3 1306 396 0 0 0 chr3 94629125 94629169 -64970614 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 3 1306 257 330 0 10 chr3 94629913 94630011 -64969772 + PB1D10 SINE Alu 1 97 -20 3 1306 363 136 0 0 chr3 94630454 94630513 -64969270 + (CAT)n Simple_repeat Simple_repeat 1 59 0 3 1306 355 256 93 8 chr3 94630832 94630950 -64968833 + B4A SINE B4 130 257 -35 3 1306 581 215 7 0 chr3 94631279 94631428 -64968355 + (TG)n Simple_repeat Simple_repeat 1 150 0 3 1306 317 227 0 15 chr3 94631430 94631497 -64968286 - RSINE1 SINE B4 -69 96 31 3 1306 232 319 13 49 chr3 94631604 94631769 -64968014 - MLT1I LTR MaLR -9 435 283 3 1306 1552 175 128 56 chr3 94631786 94632083 -64967700 + ORR1C2 LTR MaLR 1 341 -43 3 1306 1216 43 0 0 chr3 94632083 94632224 -64967559 + B1_Mus2 SINE Alu 1 141 -6 3 1306 230 0 33 0 chr3 94632226 94632256 -64967527 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 3 1306 1552 175 128 56 chr3 94632256 94632313 -64967470 + ORR1C2 LTR MaLR 342 384 0 3 1306 512 231 79 36 chr3 94632349 94632488 -64967295 - ID_B1 SINE B4 0 224 80 3 1306 1655 239 8 13 chr3 94632567 94632965 -64966818 - MTD LTR MaLR -14 405 10 3 1306 1064 117 139 12 chr3 94633259 94633432 -64966351 - B2_Mm2 SINE B2 0 195 1 3 1306 1022 166 32 16 chr3 94633660 94633850 -64965933 - B2_Mm2 SINE B2 -1 194 2 4 1306 410 66 33 0 chr3 94633879 94633940 -64965843 + (TTTA)n Simple_repeat Simple_repeat 2 64 0 4 1307 230 179 0 0 chr3 94634139 94634178 -64965605 + PB1D7 SINE Alu 32 70 -50 4 1307 996 159 0 0 chr3 94634181 94634357 -64965426 + CT-rich Low_complexity Low_complexity 2 177 0 4 1307 1184 61 0 0 chr3 94634358 94634505 -64965278 - B1_Mm SINE Alu 0 147 1 4 1307 25 0 0 0 chr3 94634514 94634539 -64965244 + AT_rich Low_complexity Low_complexity 1 25 0 4 1307 460 290 14 7 chr3 94634679 94634818 -64964965 + B1F2 SINE Alu 5 144 -5 4 1307 750 135 11 6 chr3 94634819 94634998 -64964785 + GA-rich Low_complexity Low_complexity 1 180 0 4 1307 359 283 7 14 chr3 94634999 94635139 -64964644 + (CAGAGA)n Simple_repeat Simple_repeat 6 144 0 4 1307 1210 62 0 0 chr3 94635339 94635485 -64964298 + B1_Mus1 SINE Alu 1 146 -2 4 1307 252 0 0 0 chr3 94635485 94635513 -64964270 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 4 1307 1233 48 0 0 chr3 94635580 94635727 -64964056 + B1_Mus2 SINE Alu 1 147 0 4 1307 185 83 28 0 chr3 94636447 94636483 -64963300 + (TTTG)n Simple_repeat Simple_repeat 1 37 0 4 1307 785 161 151 23 chr3 94637359 94637531 -64962252 + B2_Mm2 SINE B2 2 195 0 4 1307 493 110 0 0 chr3 94637719 94637792 -64961991 - RMER10B LTR ERVL -325 73 1 4 1307 490 269 19 0 chr3 94638580 94638688 -64961095 - ID_B1 SINE B4 -31 193 84 4 1307 320 271 101 86 chr3 94639013 94639211 -64960572 + L2a LINE L2 2669 2869 -550 4 1307 237 336 154 8 chr3 94639459 94639582 -64960201 + MLT1H2 LTR MaLR 232 372 -223 4 1307 238 313 23 46 chr3 94639616 94639703 -64960080 + MLT1H2 LTR MaLR 382 466 -23 4 1307 25 0 0 0 chr3 94639819 94639844 -64959939 + AT_rich Low_complexity Low_complexity 1 25 0 4 1307 539 276 36 24 chr3 94639896 94640063 -64959720 - B3A SINE B2 -29 169 1 4 1307 280 286 0 0 chr3 94640068 94640145 -64959638 + L2a LINE L2 3347 3423 -3 4 1307 610 255 20 7 chr3 94640681 94640827 -64958956 + B1_Mur2 SINE Alu 1 148 -1 4 1307 205 231 15 44 chr3 94641525 94641593 -64958190 + C-rich Low_complexity Low_complexity 1 66 0 4 1307 25 90 0 0 chr3 94641768 94641835 -64957948 + GC_rich Low_complexity Low_complexity 1 67 0 4 1307 23 78 0 0 chr3 94641937 94641988 -64957795 + GC_rich Low_complexity Low_complexity 1 51 0 4 1307 21 0 0 0 chr3 94642035 94642056 -64957727 + GC_rich Low_complexity Low_complexity 1 21 0 4 1307 1381 65 11 16 chr3 94643497 94643684 -64956099 - B2_Mm1a SINE B2 -7 186 1 4 1307 1619 262 208 30 chr3 94643729 94644464 -64955319 - Lx8 LINE L1 -8 7465 6600 4 1307 315 278 169 5 chr3 94644493 94644688 -64955095 + Charlie1a DNA MER1_type 404 630 -825 4 1307 1431 68 10 20 chr3 94644719 94644914 -64954869 + B2_Mm1t SINE B2 1 193 0 4 1307 272 294 118 0 chr3 94645012 94645114 -64954669 + PB1D10 SINE Alu 1 114 -6 4 1307 316 241 69 0 chr3 94645177 94645264 -64954519 + Charlie1a DNA MER1_type 751 843 -612 4 1307 333 331 71 31 chr3 94645278 94645474 -64954309 + B4A SINE B4 2 205 -87 4 1307 378 0 0 0 chr3 94646012 94646054 -64953729 + (TA)n Simple_repeat Simple_repeat 2 43 0 4 1307 790 163 27 34 chr3 94646066 94646212 -64953571 - B1_Mur1 SINE Alu 0 149 5 4 1307 312 284 73 83 chr3 94647151 94647343 -64952440 - B3A SINE B2 -2 196 7 4 1307 674 240 8 0 chr3 94647404 94647533 -64952250 - RSINE1 SINE B4 -31 134 5 4 1307 740 188 33 7 chr3 94647686 94647836 -64951947 + B3 SINE B2 2 155 -61 4 1307 911 174 23 17 chr3 94647842 94648017 -64951766 + RMER6D LTR ERVK 545 720 0 4 1307 364 242 59 20 chr3 94648017 94648118 -64951665 + B4 SINE B4 147 251 -41 4 1307 482 284 72 63 chr3 94648384 94648591 -64951192 + L1MC5 LINE L1 6692 6900 -1061 4 1307 271 219 8 125 chr3 94648753 94648873 -64950910 + PB1 SINE Alu 13 118 -9 4 1307 505 148 276 9 chr3 94648942 94649058 -64950725 - B1_Mus1 SINE Alu 0 148 2 4 1307 219 167 0 0 chr3 94649067 94649109 -64950674 + T-rich Low_complexity Low_complexity 1 42 0 4 1307 425 78 8 0 chr3 94649141 94649207 -64950576 - B2_Mm2 SINE B2 -82 116 46 4 1307 1034 119 12 18 chr3 94649223 94649394 -64950389 - B2_Mm1t SINE B2 -22 171 2 4 1307 660 219 7 52 chr3 94649454 94649608 -64950175 + B1_Mur2 SINE Alu 2 148 -1 4 1307 228 143 0 0 chr3 94649682 94649724 -64950059 + (T)n Simple_repeat Simple_repeat 1 42 0 4 1307 1154 47 13 20 chr3 94649725 94649876 -64949907 - B1_Mur4 SINE Alu 0 150 1 4 1307 1313 87 32 16 chr3 94649876 94650062 -64949721 - B2_Mm2 SINE B2 -5 190 1 4 1307 359 301 226 0 chr3 94650227 94650373 -64949410 - B3A SINE B2 -18 180 2 4 1307 4215 125 38 60 chr3 94650957 94651730 -64948053 + RMER6A LTR ERVK 1 756 0 4 1307 2941 55 19 0 chr3 94651813 94652175 -64947608 + L1_Mus2 LINE L1 6185 6553 -13 4 1307 625 134 0 26 chr3 94652175 94652363 -64947420 + GA-rich Low_complexity Low_complexity 1 183 0 4 1307 233 295 30 50 chr3 94652373 94652473 -64947310 + PB1D10 SINE Alu 7 104 -13 4 1307 1090 95 0 0 chr3 94652626 94652774 -64947009 + B1_Mus1 SINE Alu 1 148 0 4 1307 508 248 24 8 chr3 94653015 94653141 -64946642 - RSINE1 SINE B4 -20 145 18 4 1307 1448 184 246 35 chr3 94653612 94653661 -64946122 - RMER4B LTR ERVK -17 568 503 4 1307 198 0 0 0 chr3 94653661 94653683 -64946100 + (CACCC)n Simple_repeat Simple_repeat 1 22 0 4 1307 1448 184 246 35 chr3 94653683 94654089 -64945694 - RMER4B LTR ERVK -83 502 17 4 1307 707 230 54 17 chr3 94654328 94654519 -64945264 + B3 SINE B2 1 186 -9 4 1307 571 237 30 38 chr3 94654512 94654651 -64945132 - MTE2a LTR MaLR -42 377 201 4 1307 1103 111 77 6 chr3 94654651 94654832 -64944951 + B2_Mm2 SINE B2 2 195 0 4 1307 497 306 15 131 chr3 94654832 94654901 -64944882 - MTE2a LTR MaLR -164 255 198 4 1307 593 188 234 29 chr3 94654901 94655076 -64944707 - B3 SINE B2 -2 214 4 4 1307 497 252 97 124 chr3 94655076 94655148 -64944635 - MTE2a LTR MaLR -222 197 87 4 1307 651 211 120 6 chr3 94655160 94655327 -64944456 + B3 SINE B2 1 186 -30 4 1307 366 173 53 0 chr3 94656296 94656371 -64943412 + B1_Mur2 SINE Alu 71 149 0 4 1307 430 216 108 0 chr3 94656399 94656501 -64943282 + B1_Mur2 SINE Alu 36 148 -1 4 1307 501 105 0 0 chr3 94656701 94656787 -64942996 + (GA)n Simple_repeat Simple_repeat 1 86 0 4 1307 398 250 54 135 chr3 94656787 94656829 -64942954 - B4A SINE B4 -1 291 271 4 1307 483 18 0 0 chr3 94656829 94656885 -64942898 + (TG)n Simple_repeat Simple_repeat 2 57 0 4 1307 398 250 54 135 chr3 94656885 94657064 -64942719 - B4A SINE B4 -22 270 88 4 1307 431 202 75 0 chr3 94657182 94657276 -64942507 + PB1D9 SINE Alu 20 120 0 4 1307 543 267 71 26 chr3 94657282 94657436 -64942347 + RSINE1 SINE B4 3 163 -2 4 1307 381 266 156 0 chr3 94657672 94657800 -64941983 + B1F SINE Alu 1 148 -1 4 1307 608 279 103 10 chr3 94658089 94658292 -64941491 + ID_B1 SINE B4 2 223 -1 4 1307 398 207 132 26 chr3 94658303 94658417 -64941366 + B1F1 SINE Alu 8 133 -16 4 1307 848 191 69 0 chr3 94659138 94659311 -64940472 - B3 SINE B2 -20 196 12 4 1307 1185 239 36 57 chr3 94659391 94659777 -64940006 + MTE2a LTR MaLR 1 378 -1 4 1307 266 86 0 0 chr3 94660596 94660631 -64939152 - ID_B1 SINE B4 -8 216 182 4 1307 568 265 43 12 chr3 94660643 94660807 -64938976 - B3 SINE B2 -1 215 47 4 1307 650 200 37 7 chr3 94660984 94661120 -64938663 - B1_Mur1 SINE Alu -2 147 8 4 1307 255 281 62 131 chr3 94660988 94661148 -64938635 - B4 SINE B4 -72 220 72 4 1307 747 242 131 0 chr3 94661480 94661678 -64938105 + ID_B1 SINE B4 1 224 0 4 1307 578 254 176 65 chr3 94661683 94661944 -64937839 + B4 SINE B4 3 292 0 4 1307 805 29 0 0 chr3 94661959 94662061 -64937722 + B2_Mm1t SINE B2 2 103 -90 4 1307 1296 13 0 0 chr3 94662072 94662229 -64937554 + B2_Mm1a SINE B2 2 158 -35 4 1307 297 0 0 0 chr3 94662229 94662262 -64937521 + (TAAA)n Simple_repeat Simple_repeat 1 33 0 4 1307 1284 99 16 16 chr3 94662401 94662595 -64937188 + B2_Mm2 SINE B2 1 194 -1 4 1307 530 245 55 41 chr3 94662851 94662996 -64936787 - B1_Mur2 SINE Alu -2 147 1 4 1307 695 186 192 0 chr3 94663015 94663171 -64936612 - B3 SINE B2 -7 209 24 4 1307 295 250 0 0 chr3 94663216 94663288 -64936495 - ID_B1 SINE B4 -2 222 151 4 1307 1102 111 86 17 chr3 94663289 94663464 -64936319 - B2_Mm2 SINE B2 -8 187 1 4 1307 557 268 104 20 chr3 94663515 94663717 -64936066 - ID_B1 SINE B4 -3 221 3 4 1307 220 218 35 35 chr3 94663860 94663917 -64935866 + PB1D10 SINE Alu 55 111 -6 4 1307 397 245 19 19 chr3 94663920 94664028 -64935755 - ORR1D1 LTR MaLR -266 108 1 4 1307 225 184 0 93 chr3 94664114 94664168 -64935615 + RSINE1 SINE B4 3 51 -114 4 1307 384 163 0 0 chr3 94664189 94664275 -64935508 + (CA)n Simple_repeat Simple_repeat 1 86 0 4 1307 916 248 14 10 chr3 94665162 94665370 -64934413 + B3 SINE B2 2 210 -6 4 1307 257 109 22 0 chr3 94665493 94665539 -64934244 + (GAA)n Simple_repeat Simple_repeat 1 47 0 4 1307 485 272 66 0 chr3 94665780 94665916 -64933867 + B1F SINE Alu 5 149 0 4 1307 1157 56 7 0 chr3 94665917 94666061 -64933722 + B1_Mus1 SINE Alu 3 147 -1 4 1307 247 180 60 0 chr3 94666096 94666146 -64933637 + PB1 SINE Alu 73 125 -2 4 1307 347 191 211 11 chr3 94666822 94666917 -64932866 + PB1D10 SINE Alu 3 116 -1 4 1307 338 200 37 12 chr3 94667012 94667093 -64932690 + ID4_ SINE ID 1 83 0 4 1307 553 254 22 0 chr3 94667217 94667351 -64932432 + RSINE1 SINE B4 27 163 -2 5 1307 736 184 72 98 chr3 94668834 94669027 -64930756 - B2_Mm2 SINE B2 -7 188 1 5 1307 248 277 88 23 chr3 94669134 94669338 -64930445 - MER58B DNA MER1_type -37 304 84 5 1307 715 219 20 7 chr3 94669418 94669565 -64930218 + B1_Mur1 SINE Alu 1 149 0 5 1307 338 294 0 47 chr3 94669646 94669753 -64930030 + PB1D10 SINE Alu 9 110 -7 5 1307 1151 75 7 0 chr3 94669826 94669972 -64929811 + B1_Mus1 SINE Alu 2 148 0 5 1307 456 264 148 27 chr3 94669990 94670173 -64929610 + B4A SINE B4 26 230 -62 5 1307 262 75 0 0 chr3 94670173 94670213 -64929570 + B1_Mus2 SINE Alu 108 147 0 5 1307 402 114 38 0 chr3 94670213 94670292 -64929491 + GA-rich Low_complexity Low_complexity 1 82 0 5 1307 297 0 0 0 chr3 94670293 94670326 -64929457 + (TGAA)n Simple_repeat Simple_repeat 1 33 0 5 1307 212 191 24 0 chr3 94670385 94670427 -64929356 + (CATA)n Simple_repeat Simple_repeat 4 46 0 5 1307 264 271 17 0 chr3 94670566 94670625 -64929158 + B1F SINE Alu 7 66 -83 5 1307 348 278 158 43 chr3 94670918 94671057 -64928726 + RSINE1 SINE B4 5 159 -6 5 1307 501 193 91 9 chr3 94671066 94671176 -64928607 + B1_Mm SINE Alu 2 120 0 5 1307 1100 58 7 0 chr3 94671610 94671747 -64928036 + B1_Mus2 SINE Alu 1 138 -9 5 1307 470 252 102 0 chr3 94672156 94672283 -64927500 - B3 SINE B2 -1 215 76 5 1307 381 209 32 42 chr3 94672342 94672437 -64927346 + RSINE1 SINE B4 8 101 -64 5 1307 763 325 18 31 chr3 94672471 94672798 -64926985 + L1M3 LINE L1 5501 5823 -360 5 1307 761 189 98 10 chr3 94672830 94673033 -64926750 - Lx9 LINE L1 -2 7642 7422 5 1307 288 345 0 41 chr3 94673156 94673277 -64926506 + ID_B1 SINE B4 105 220 -4 5 1307 244 360 73 7 chr3 94673430 94673567 -64926216 - B1F SINE Alu -1 148 3 5 1307 307 348 35 9 chr3 94673455 94673568 -64926215 - ID_B1 SINE B4 -26 198 83 5 1307 337 296 37 9 chr3 94673602 94673711 -64926072 + PB1D10 SINE Alu 2 113 -4 5 1307 325 281 67 42 chr3 94674675 94674794 -64924989 + PB1 SINE Alu 1 122 -5 5 1307 775 188 58 0 chr3 94675355 94675493 -64924290 - B1_Mur4 SINE Alu -4 146 1 5 1307 710 272 69 10 chr3 94675633 94675837 -64923946 + B3 SINE B2 1 216 0 5 1307 578 246 0 0 chr3 94675866 94675980 -64923803 + B3A SINE B2 1 114 -84 5 1307 691 103 8 57 chr3 94676630 94676754 -64923029 - B1_Mur4 SINE Alu -2 148 31 5 1307 414 0 0 0 chr3 94676817 94676863 -64922920 + (TTGG)n Simple_repeat Simple_repeat 2 47 0 5 1307 755 137 6 141 chr3 94676876 94677046 -64922737 - B1_Mus1 SINE Alu -1 147 1 5 1307 623 184 9 0 chr3 94677054 94677163 -64922620 - B3A SINE B2 -82 116 7 5 1307 343 208 0 14 chr3 94677290 94677363 -64922420 + PB1D10 SINE Alu 41 112 -5 5 1307 382 277 22 30 chr3 94677758 94677892 -64921891 + B1F2 SINE Alu 17 149 0 5 1307 812 77 3 0 chr3 94678328 94678445 -64921338 + B1_Mus1 SINE Alu 24 142 -6 5 1307 419 250 43 22 chr3 94681543 94681682 -64918101 - Lx6 LINE L1 -23 7437 7296 5 1307 192 97 0 0 chr3 94686068 94686099 -64913684 + (T)n Simple_repeat Simple_repeat 1 31 0 5 1307 596 222 26 0 chr3 94686387 94686504 -64913279 + B1_Mus1 SINE Alu 1 120 -28 5 1307 390 271 90 33 chr3 94686396 94686518 -64913265 + B4 SINE B4 94 222 -70 5 1307 462 234 67 37 chr3 94686806 94686970 -64912813 - B4 SINE B4 -123 169 1 5 1307 276 283 179 54 chr3 94686989 94687157 -64912626 - B3 SINE B2 -27 189 1 5 1307 249 234 0 86 chr3 94687572 94687642 -64912141 + PB1D7 SINE Alu 20 83 -37 5 1307 585 237 119 16 chr3 94687649 94687842 -64911941 + B4A SINE B4 1 213 -79 5 1307 888 50 50 0 chr3 94687851 94687972 -64911811 + B1_Mm SINE Alu 21 147 0 5 1307 274 205 205 0 chr3 94688150 94688233 -64911550 + PB1D9 SINE Alu 21 120 0 5 1307 471 218 50 0 chr3 94688705 94688806 -64910977 - PB1D9 SINE Alu -14 106 1 5 1307 211 341 138 0 chr3 94689111 94689234 -64910549 - RSINE1 SINE B4 -10 155 16 5 1307 409 212 24 89 chr3 94689234 94689358 -64910425 - PB1D10 SINE Alu -1 116 1 5 1307 246 221 12 83 chr3 94689767 94689851 -64909932 + ID4 SINE ID 1 78 -5 5 1307 350 160 378 0 chr3 94691311 94691430 -64908353 + B3 SINE B2 7 170 -46 5 1307 276 345 25 0 chr3 94691468 94691587 -64908196 + B1_Mur3 SINE Alu 27 148 -1 5 1307 1000 168 0 15 chr3 94691914 94692113 -64907670 + RMER10B LTR ERVL 1 196 -202 5 1307 1497 39 27 16 chr3 94692175 94692359 -64907424 - B2_Mm2 SINE B2 -8 187 2 5 1307 579 258 41 21 chr3 94692423 94692578 -64907205 + B3 SINE B2 1 178 -38 5 1307 724 241 84 0 chr3 94692615 94692806 -64906977 - B3 SINE B2 -8 208 2 5 1307 683 271 60 114 chr3 94692904 94693237 -64906546 + MTE2a LTR MaLR 3 317 -62 5 1307 235 183 27 40 chr3 94693298 94693372 -64906411 - RLTR15 LTR ERVK -52 307 235 5 1307 261 0 0 0 chr3 94693380 94693409 -64906374 + (TTG)n Simple_repeat Simple_repeat 2 30 0 5 1307 1164 62 0 14 chr3 94693409 94693548 -64906235 - B1_Mus2 SINE Alu -7 140 2 5 1307 489 225 85 8 chr3 94693828 94693958 -64905825 - B1F SINE Alu -1 148 9 5 1307 267 247 0 0 chr3 94694076 94694149 -64905634 + T-rich Low_complexity Low_complexity 1 73 0 5 1307 470 275 116 56 chr3 94694149 94694173 -64905610 - L1MA4A LINE L1 -419 5884 5867 5 1307 1556 43 0 5 chr3 94694173 94694359 -64905424 + B2_Mm1a SINE B2 2 186 -7 5 1307 470 275 116 56 chr3 94694359 94694431 -64905352 - L1MA4A LINE L1 -437 5866 5780 5 1307 357 43 0 0 chr3 94694431 94694478 -64905305 + (TG)n Simple_repeat Simple_repeat 1 47 0 5 1307 470 275 116 56 chr3 94694478 94694630 -64905153 - L1MA4A LINE L1 -524 5779 5621 5 1307 4458 139 57 64 chr3 94694807 94695684 -64904099 + RMER19B LTR ERVK 3 873 -29 5 1307 990 59 96 7 chr3 94695684 94695820 -64903963 + B1_Mus1 SINE Alu 1 148 0 5 1307 1350 66 11 21 chr3 94695847 94696033 -64903750 + B2_Mm1t SINE B2 2 185 -8 5 1307 263 120 120 0 chr3 94696109 94696159 -64903624 - RMER15 LTR ERVL -113 462 407 5 1307 918 165 66 28 chr3 94696219 94696431 -64903352 - ORR1D1 LTR MaLR 0 374 155 5 1307 472 239 59 8 chr3 94696433 94696551 -64903232 - Lx8 LINE L1 -1141 6332 6209 5 1307 360 248 0 19 chr3 94696572 94696675 -64903108 - B3 SINE B2 0 216 116 5 1307 258 262 35 23 chr3 94696667 94696753 -64903030 - ID SINE ID -137 87 1 5 1307 1107 58 7 0 chr3 94696945 94697082 -64902701 - B1_Mus1 SINE Alu -9 139 2 5 1307 453 103 0 0 chr3 94697116 94697184 -64902599 + (TG)n Simple_repeat Simple_repeat 1 68 0 5 1307 904 224 39 45 chr3 94697320 94697656 -64902127 - RLTR15 LTR ERVK -18 341 8 5 1307 4043 168 58 67 chr3 94697660 94698542 -64901241 - MYSERV6-int LTR ERVK -1 8958 8085 5 1307 305 212 12 59 chr3 94698542 94698627 -64901156 + L1_Rod LINE L1 4816 4896 -951 5 1307 1359 109 5 5 chr3 94698627 94698821 -64900962 + B2_Mm2 SINE B2 2 195 0 5 1307 623 85 21 0 chr3 94698823 94698917 -64900866 + (GGAA)n Simple_repeat Simple_repeat 3 98 0 5 1307 2069 104 36 10 chr3 94698917 94699219 -64900564 + Lx2B LINE L1 6370 6679 -321 5 1307 510 158 18 0 chr3 94699219 94699333 -64900450 + Lx2B LINE L1 6885 7000 0 5 1307 517 167 9 9 chr3 94699333 94699417 -64900366 + polypurine Low_complexity Low_complexity 3 86 0 5 1307 618 49 0 0 chr3 94699417 94699529 -64900254 + L1Md_A LINE L1 6501 6582 0 5 1307 1120 251 90 53 chr3 94699718 94700185 -64899598 - MYSERV-int LTR ERVK -1811 4739 4256 5 1307 979 189 28 6 chr3 94700434 94700615 -64899168 - MYSERV6-int LTR ERVK -7502 1457 1273 5 1307 528 234 0 65 chr3 94700772 94700927 -64898856 - MYSERV6-int LTR ERVK -1784 1393 1249 5 1307 21726 25 2 0 chr3 94700937 94703459 -64896324 + L1Md_F2 LINE L1 3060 5586 -297 5 1307 8417 39 2 1 chr3 94703459 94704454 -64895329 + L1Md_F2 LINE L1 5587 6582 0 5 1307 1200 271 47 64 chr3 94704485 94704522 -64895261 - MYSERV6-int LTR ERVK -7911 1048 1018 5 1307 4146 165 120 15 chr3 94704522 94705338 -64894445 + RMER19B LTR ERVK 1 902 0 5 1307 1200 271 47 64 chr3 94705338 94705784 -64893999 - MYSERV6-int LTR ERVK -7942 1017 571 5 1307 1601 48 0 0 chr3 94705784 94705972 -64893811 - B2_Mm1a SINE B2 -4 189 2 5 1307 1200 271 47 64 chr3 94705972 94706000 -64893783 - MYSERV6-int LTR ERVK -8389 570 545 5 1307 189 0 0 0 chr3 94706101 94706122 -64893661 + (TG)n Simple_repeat Simple_repeat 1 21 0 5 1307 284 0 0 27 chr3 94706204 94706241 -64893542 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 5 1307 721 138 53 23 chr3 94706241 94706365 -64893418 - B1_Mur2 SINE Alu -13 136 6 5 1307 803 208 116 30 chr3 94706383 94706581 -64893202 - B3 SINE B2 0 216 2 5 1307 327 293 204 0 chr3 94706585 94706766 -64893017 - ID_B1 SINE B4 -5 219 2 5 1307 398 296 20 66 chr3 94707089 94707241 -64892542 + B4A SINE B4 2 146 -146 5 1307 234 156 0 0 chr3 94707261 94707306 -64892477 + (CAA)n Simple_repeat Simple_repeat 3 47 0 5 1307 508 240 18 9 chr3 94707327 94707454 -64892329 + B1F SINE Alu 1 129 -21 5 1307 1215 74 97 0 chr3 94707538 94707714 -64892069 - B2_Mm2 SINE B2 -1 194 2 5 1307 1159 48 0 20 chr3 94707774 94707923 -64891860 - B1_Mus1 SINE Alu -1 147 2 5 1307 1533 194 35 60 chr3 94708150 94708550 -64891233 + MTC LTR MaLR 1 390 -31 5 1307 2090 168 32 60 chr3 94708572 94708769 -64891014 + MTC LTR MaLR 2 210 -211 5 1307 1415 104 16 0 chr3 94708769 94708961 -64890822 + B2_Mm2 SINE B2 1 195 0 5 1307 2090 168 32 60 chr3 94708961 94709195 -64890588 + MTC LTR MaLR 211 421 0 5 1307 749 207 40 149 chr3 94709279 94709346 -64890437 + RMER16 LTR ERVK 266 314 -219 5 1307 1052 57 57 7 chr3 94709346 94709487 -64890296 - B1_Mus1 SINE Alu 0 148 1 6 1307 749 207 40 149 chr3 94709487 94709720 -64890063 + RMER16 LTR ERVK 315 533 0 5 1307 13987 138 19 3 chr3 94709720 94711809 -64887974 - MERVL_2A-int LTR ERVL -2360 3401 1280 6 1307 713 229 7 0 chr3 94711814 94711958 -64887825 + B1_Mur4 SINE Alu 6 150 0 6 1307 4394 157 38 66 chr3 94711965 94712186 -64887597 - MERVL_2A-int LTR ERVL -4467 1294 1069 6 1307 1179 114 29 0 chr3 94712186 94712361 -64887422 - B2_Mm2 SINE B2 -15 180 1 6 1307 4394 157 38 66 chr3 94712361 94713005 -64886778 - MERVL_2A-int LTR ERVL -4693 1068 453 6 1307 1856 131 91 3 chr3 94713005 94713335 -64886448 + ORR1B2 LTR MaLR 1 359 -8 6 1307 2312 139 77 41 chr3 94713336 94713777 -64886006 - MERVL_2A-int LTR ERVL -5303 458 2 6 1307 742 84 104 93 chr3 94713778 94713961 -64885822 - MT2A LTR ERVL 0 533 349 6 1307 353 77 0 0 chr3 94713963 94714020 -64885763 - MT2A LTR ERVL -476 57 1 6 1307 390 100 0 0 chr3 94714373 94714433 -64885350 + (T)n Simple_repeat Simple_repeat 1 60 0 6 1307 1111 55 0 33 chr3 94714437 94714588 -64885195 - B1_Mus2 SINE Alu 0 147 2 6 1307 863 113 33 53 chr3 94714633 94714783 -64885000 - B1_Mus2 SINE Alu 0 147 1 6 1307 1351 69 0 108 chr3 94714787 94714999 -64884784 - B2_Mm2 SINE B2 -5 190 2 6 1307 772 219 115 0 chr3 94715005 94715197 -64884586 - B3 SINE B2 0 216 3 6 1307 624 223 8 0 chr3 94715656 94715777 -64884006 + B3 SINE B2 2 123 -93 6 1307 748 164 64 0 chr3 94716013 94716153 -64883630 + B1_Mur4 SINE Alu 2 150 0 6 1307 421 212 115 5 chr3 94716255 94716375 -64883408 + B3A SINE B2 5 131 -64 6 1307 1286 240 22 48 chr3 94716442 94716467 -64883316 - Lx8 LINE L1 -742 6731 6711 6 1307 1655 26 11 0 chr3 94716467 94716658 -64883125 - B2_Mm1a SINE B2 0 193 1 6 1307 1286 240 22 48 chr3 94716658 94716943 -64882840 - Lx8 LINE L1 -763 6710 6429 6 1307 295 195 147 0 chr3 94716957 94717035 -64882748 - ID_B1 SINE B4 -137 155 64 6 1307 748 199 0 21 chr3 94717163 94717307 -64882476 - B1_Mur1 SINE Alu -7 142 2 6 1307 764 290 156 55 chr3 94717318 94717380 -64882403 - L1MD1 LINE L1 -8 6351 6291 6 1307 1107 96 0 0 chr3 94717380 94717516 -64882267 + B1_Mm SINE Alu 2 137 -10 6 1307 198 0 0 0 chr3 94717516 94717538 -64882245 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 6 1307 764 290 156 55 chr3 94717547 94717652 -64882131 - L1MD1 LINE L1 -69 6290 6176 6 1307 306 0 0 0 chr3 94717652 94717686 -64882097 + (TTTG)n Simple_repeat Simple_repeat 4 37 0 6 1307 798 270 139 36 chr3 94717686 94718133 -64881650 - L1MD1 LINE L1 -184 6175 5674 6 1307 346 329 41 7 chr3 94718216 94718363 -64881420 - MIR SINE MIR -2 260 109 6 1307 1417 180 139 48 chr3 94718691 94719065 -64880718 - MTD LTR MaLR 0 419 12 6 1307 1245 172 232 3 chr3 94719605 94719932 -64879851 + MTD LTR MaLR 13 414 -5 6 1307 266 327 42 47 chr3 94719956 94720168 -64879615 - ERVL-E-int LTR ERVL -1247 4420 4210 6 1307 281 179 147 0 chr3 94720616 94720696 -64879087 - B3 SINE B2 -108 90 1 6 1307 27 0 0 0 chr3 94720697 94720724 -64879059 + AT_rich Low_complexity Low_complexity 1 27 0 6 1307 32 48 0 16 chr3 94720797 94720830 -64878953 + AT_rich Low_complexity Low_complexity 1 33 0 6 1307 1251 28 0 0 chr3 94720830 94720974 -64878809 - B1_Mm SINE Alu -2 145 2 6 1307 32 48 0 16 chr3 94720974 94721004 -64878779 + AT_rich Low_complexity Low_complexity 1 30 0 6 1307 719 209 130 16 chr3 94721072 94721257 -64878526 - B3 SINE B2 -1 215 10 6 1307 223 221 203 112 chr3 94721329 94721361 -64878422 + B4 SINE B4 63 218 -74 6 1307 580 180 90 0 chr3 94721361 94721472 -64878311 + B1_Mur1 SINE Alu 21 141 -8 6 1307 369 328 23 15 chr3 94721570 94721700 -64878083 - MIR SINE MIR -111 151 21 6 1307 1082 43 63 21 chr3 94722514 94722656 -64877127 + B1_Mus1 SINE Alu 1 148 0 6 1307 446 285 116 6 chr3 94722804 94722977 -64876806 + MIR SINE MIR 29 220 -42 6 1307 208 311 0 16 chr3 94723023 94723085 -64876698 + MIRb SINE MIR 208 268 0 6 1307 664 224 91 43 chr3 94723270 94723457 -64876326 - B3A SINE B2 0 198 3 6 1307 300 262 19 46 chr3 94723663 94723771 -64876012 + B4A SINE B4 65 169 -123 6 1307 448 235 283 0 chr3 94723790 94723956 -64875827 + ID_B1 SINE B4 2 214 -10 6 1307 209 196 20 0 chr3 94724111 94724162 -64875621 + (TA)n Simple_repeat Simple_repeat 2 53 0 6 1307 448 215 43 0 chr3 94724247 94724340 -64875443 - U6 snRNA snRNA -4 103 7 6 1307 302 0 0 26 chr3 94724805 94724844 -64874939 + (TTG)n Simple_repeat Simple_repeat 2 39 0 6 1307 515 220 50 0 chr3 94724850 94724950 -64874833 - PB1D10 SINE Alu -10 107 3 6 1307 246 287 17 167 chr3 94724950 94725052 -64874731 - MT2B2 LTR ERVL -423 161 87 6 1307 359 272 68 68 chr3 94725117 94725338 -64874445 - MLT1C LTR MaLR -55 412 192 6 1307 297 241 159 62 chr3 94725400 94725608 -64874175 + Lx8 LINE L1 7227 7454 -19 6 1307 1152 145 5 25 chr3 94725610 94725645 -64874138 - B2_Mm2 SINE B2 -1 194 162 6 1307 189 0 0 0 chr3 94725645 94725666 -64874117 + (TTTA)n Simple_repeat Simple_repeat 3 23 0 6 1307 1152 145 5 25 chr3 94725666 94725828 -64873955 - B2_Mm2 SINE B2 -34 161 1 6 1307 1388 72 16 16 chr3 94726975 94727160 -64872623 - B2_Mm2 SINE B2 -9 186 2 6 1307 450 215 97 0 chr3 94727167 94727260 -64872523 - PB1D7 SINE Alu -2 118 17 6 1307 254 333 81 0 chr3 94727188 94727275 -64872508 - ID_B1 SINE B4 -49 175 82 6 1307 264 167 0 0 chr3 94727287 94727335 -64872448 + CT-rich Low_complexity Low_complexity 1 48 0 6 1307 746 280 10 32 chr3 94727335 94727554 -64872229 - ID_B1 SINE B4 -46 246 27 6 1307 509 274 67 0 chr3 94727624 94727759 -64872024 + B1F1 SINE Alu 1 144 -5 6 1307 575 286 28 14 chr3 94727787 94727929 -64871854 + ID_B1 SINE B4 81 224 0 6 1307 336 284 0 12 chr3 94727934 94728016 -64871767 + B3 SINE B2 2 82 -134 6 1307 217 295 127 13 chr3 94728047 94728126 -64871657 - RSINE1 SINE B4 -72 93 6 6 1307 249 180 0 0 chr3 94728134 94728184 -64871599 + CT-rich Low_complexity Low_complexity 3 52 0 6 1307 379 245 40 30 chr3 94728259 94728360 -64871423 - B1F SINE Alu -5 144 43 6 1307 515 293 24 0 chr3 94728387 94728510 -64871273 - ID_B1 SINE B4 -9 215 90 6 1307 810 231 40 10 chr3 94728822 94729023 -64870760 + ID_B1 SINE B4 4 210 -14 6 1307 1062 138 0 0 chr3 94729026 94729200 -64870583 + (GGAA)n Simple_repeat Simple_repeat 4 177 0 6 1307 1416 56 39 0 chr3 94729318 94729498 -64870285 - B2_Mm2 SINE B2 -6 189 3 6 1307 498 228 115 23 chr3 94729533 94729663 -64870120 - ID_B1 SINE B4 -3 221 80 6 1307 239 293 80 0 chr3 94729802 94729877 -64869906 - ID4_ SINE ID 0 83 3 6 1307 210 91 0 0 chr3 94729886 94729919 -64869864 + (T)n Simple_repeat Simple_repeat 1 33 0 6 1307 446 313 162 8 chr3 94729989 94730224 -64869559 - B4 SINE B4 -20 272 2 6 1307 2083 160 88 8 chr3 94730964 94731349 -64868434 - MTC LTR MaLR 0 421 6 6 1307 237 227 23 0 chr3 94732038 94732082 -64867701 - B4A SINE B4 -200 92 48 6 1307 1407 45 79 0 chr3 94732083 94732260 -64867523 - B2_Mm1a SINE B2 -2 191 1 6 1307 289 188 77 15 chr3 94732282 94732347 -64867436 - MTEb LTR MaLR 0 379 311 6 1307 1369 66 11 32 chr3 94732347 94732535 -64867248 + B2_Mm2 SINE B2 2 185 -10 6 1307 180 0 0 0 chr3 94732535 94732555 -64867228 + (TTTA)n Simple_repeat Simple_repeat 3 22 0 6 1307 1272 69 0 0 chr3 94732555 94732714 -64867069 - B2_Mm1t SINE B2 -33 160 2 6 1307 606 205 295 0 chr3 94732747 94732913 -64866870 + B3 SINE B2 2 216 0 6 1307 521 175 186 32 chr3 94732924 94733048 -64866735 + B1_Mur4 SINE Alu 1 143 -7 6 1307 780 215 0 0 chr3 94733091 94733226 -64866557 + B1_Mus1 SINE Alu 2 136 -12 6 1307 825 11 0 0 chr3 94733226 94733320 -64866463 + (GAA)n Simple_repeat Simple_repeat 1 94 0 6 1307 1111 181 30 0 chr3 94733352 94733551 -64866232 + B3 SINE B2 1 205 -11 6 1307 319 289 50 0 chr3 94733564 94733685 -64866098 - MTEb LTR MaLR -102 277 151 6 1307 717 179 30 155 chr3 94733688 94733841 -64865942 - MT2A LTR ERVL -328 205 79 6 1307 261 75 0 0 chr3 94733841 94733881 -64865902 + (CAAA)n Simple_repeat Simple_repeat 2 41 0 6 1307 717 179 30 155 chr3 94733881 94733959 -64865824 - MT2A LTR ERVL -455 78 3 6 1307 224 262 34 91 chr3 94733959 94734039 -64865744 - PB1D10 SINE Alu -40 77 3 6 1307 270 81 0 0 chr3 94734040 94734077 -64865706 + (TTTG)n Simple_repeat Simple_repeat 4 40 0 6 1307 201 39 0 0 chr3 94735139 94735165 -64864618 + (TTTA)n Simple_repeat Simple_repeat 1 26 0 6 1307 791 211 32 54 chr3 94735168 94735353 -64864430 - B3A SINE B2 -16 182 2 6 1307 316 173 341 12 chr3 94735426 94735508 -64864275 - B1F2 SINE Alu -40 109 1 6 1307 291 54 0 0 chr3 94735586 94735623 -64864160 + (CA)n Simple_repeat Simple_repeat 1 37 0 6 1307 698 192 131 17 chr3 94736134 94736309 -64863474 + Lx5 LINE L1 6856 7050 0 6 1307 291 145 0 38 chr3 94737835 94737880 -64861903 + polypyrimidine Low_complexity Low_complexity 34 77 0 6 1307 1163 28 11 38 chr3 94737880 94738065 -64861718 + (TCC)n Simple_repeat Simple_repeat 1 180 0 6 1307 291 145 0 38 chr3 94738065 94738085 -64861698 + polypyrimidine Low_complexity Low_complexity 14 33 0 6 1307 1229 61 0 0 chr3 94738085 94738233 -64861550 - B1_Mus1 SINE Alu 0 148 1 6 1307 291 145 0 38 chr3 94738233 94738245 -64861538 + polypyrimidine Low_complexity Low_complexity 3 13 0 6 1307 322 238 141 12 chr3 94738252 94738337 -64861446 - B3 SINE B2 -2 214 119 6 1307 186 43 0 0 chr3 94738401 94738424 -64861359 + (TTG)n Simple_repeat Simple_repeat 2 24 0 6 1307 189 0 0 0 chr3 94738439 94738460 -64861323 + (TTGG)n Simple_repeat Simple_repeat 2 22 0 6 1307 652 127 99 25 chr3 94738460 94738572 -64861211 - B1F2 SINE Alu -9 140 19 6 1307 316 253 0 13 chr3 94738584 94738660 -64861123 + B1F SINE Alu 1 75 -74 6 1307 425 248 61 9 chr3 94738753 94738867 -64860916 - B3 SINE B2 0 216 97 6 1307 812 118 96 0 chr3 94738875 94739011 -64860772 - B1_Mur3 SINE Alu 0 149 1 7 1307 531 208 66 148 chr3 94738880 94738899 -64860884 - ID_B1 SINE B4 -1 223 188 7 1307 531 208 66 148 chr3 94739011 94739085 -64860698 - ID_B1 SINE B4 -1 187 40 7 1307 1689 31 0 5 chr3 94739085 94739281 -64860502 - B2_Mm2 SINE B2 0 195 1 7 1307 531 208 66 148 chr3 94739281 94739318 -64860465 - ID SINE ID -185 39 1 7 1307 278 218 18 0 chr3 94739796 94739851 -64859932 - ID4 SINE ID -20 63 8 7 1307 294 29 0 0 chr3 94739879 94739914 -64859869 + (TG)n Simple_repeat Simple_repeat 1 35 0 7 1307 676 173 85 2 chr3 94740024 94740158 -64859625 - B1_Mur2 SINE Alu 0 149 14 7 1307 247 188 21 0 chr3 94740168 94740216 -64859567 - PB1D10 SINE Alu -21 96 48 7 1307 358 277 0 41 chr3 94742210 94742308 -64857475 + PB1D10 SINE Alu 24 117 0 7 1307 243 299 15 0 chr3 94742311 94742378 -64857405 + ID4 SINE ID 3 70 -13 7 1307 387 0 0 0 chr3 94742379 94742422 -64857361 + (CA)n Simple_repeat Simple_repeat 2 44 0 7 1307 201 39 0 0 chr3 94742612 94742638 -64857145 + (TTG)n Simple_repeat Simple_repeat 3 28 0 7 1307 762 197 44 0 chr3 94742682 94742819 -64856964 + B1_Mur3 SINE Alu 1 143 -6 7 1307 1492 57 10 10 chr3 94742827 94743021 -64856762 + B2_Mm2 SINE B2 2 195 0 7 1307 214 220 0 57 chr3 94743021 94743065 -64856718 + polypurine Low_complexity Low_complexity 10 52 0 7 1307 194 62 0 30 chr3 94743128 94743161 -64856622 + (TTTG)n Simple_repeat Simple_repeat 4 35 0 7 1307 1081 46 0 8 chr3 94743164 94743295 -64856488 - B1_Mm SINE Alu -16 131 2 7 1307 598 211 45 32 chr3 94744616 94744758 -64855025 + B1_Mur1 SINE Alu 3 150 0 7 1307 1072 208 25 0 chr3 94744758 94744960 -64854823 + B3 SINE B2 4 210 -6 7 1307 407 37 0 0 chr3 94744993 94745047 -64854736 + B1_Mur4 SINE Alu 97 150 0 7 1307 332 0 67 33 chr3 94745053 94745113 -64854670 + (CAAAA)n Simple_repeat Simple_repeat 5 66 0 7 1307 294 188 0 0 chr3 94745154 94745202 -64854581 + ID_B1 SINE B4 105 152 -72 7 1307 270 286 100 74 chr3 94745204 94745434 -64854349 + MT2B2 LTR ERVL 41 276 -308 7 1307 347 261 35 35 chr3 94745306 94745449 -64854334 - YREP_Mm Unknown Unknown -1484 328 186 7 1307 648 185 34 0 chr3 94745337 94745456 -64854327 + ID_B1 SINE B4 100 222 -2 7 1307 456 298 0 60 chr3 94745478 94745593 -64854190 - RLTR28 LTR ERVL 0 524 411 7 1307 624 159 98 0 chr3 94745593 94745725 -64854058 + B1_Mur3 SINE Alu 5 149 0 7 1307 456 298 0 60 chr3 94745725 94745777 -64854006 - RLTR28 LTR ERVL -114 410 367 7 1307 2371 145 58 5 chr3 94745784 94746214 -64853569 - RLTR28 LTR ERVL -71 453 1 7 1307 452 207 126 0 chr3 94746810 94746897 -64852886 + B1_Mur1 SINE Alu 47 144 -5 7 1307 408 40 0 0 chr3 94746897 94746947 -64852836 + (CA)n Simple_repeat Simple_repeat 2 51 0 7 1307 1292 220 67 43 chr3 94746994 94747047 -64852736 - MTEb LTR MaLR -2 377 331 7 1307 1711 21 0 0 chr3 94747047 94747239 -64852544 + B2_Mm1a SINE B2 2 193 0 7 1307 1292 220 67 43 chr3 94747239 94747513 -64852270 - MTEb LTR MaLR -49 330 42 7 1307 789 129 0 0 chr3 94747517 94747656 -64852127 + (TG)n Simple_repeat Simple_repeat 1 139 0 7 1307 212 59 29 0 chr3 94748926 94748960 -64850823 + (TG)n Simple_repeat Simple_repeat 1 35 0 7 1307 1482 148 52 0 chr3 94748961 94749190 -64850593 + ORR1B1 LTR MaLR 113 353 -41 7 1307 1069 110 7 0 chr3 94749190 94749336 -64850447 + B1_Mus1 SINE Alu 2 148 0 7 1307 890 146 0 27 chr3 94749547 94749695 -64850088 - B1_Mus1 SINE Alu 0 148 5 7 1307 345 336 38 15 chr3 94749793 94749926 -64849857 - RMER15 LTR ERVL -93 482 347 7 1307 881 201 44 6 chr3 94750123 94750303 -64849480 - B3A SINE B2 -10 188 2 7 1307 225 0 0 0 chr3 94750438 94750463 -64849320 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 7 1307 951 51 0 0 chr3 94750884 94751001 -64848782 + B1_Mus1 SINE Alu 32 148 0 7 1307 243 0 0 0 chr3 94751004 94751031 -64848752 + (GA)n Simple_repeat Simple_repeat 1 27 0 7 1307 1102 121 24 6 chr3 94751033 94751200 -64848583 + B2_Mm2 SINE B2 18 187 -8 7 1307 405 263 151 8 chr3 94751227 94751346 -64848437 + ID_B1 SINE B4 89 224 0 7 1307 747 194 0 28 chr3 94751614 94751757 -64848026 - B1_Mur4 SINE Alu 0 150 12 7 1307 225 0 0 0 chr3 94751758 94751783 -64848000 + (CA)n Simple_repeat Simple_repeat 1 25 0 7 1307 718 133 16 24 chr3 94751806 94751929 -64847854 - B1_Mus1 SINE Alu -22 126 5 7 1307 351 233 60 104 chr3 94751824 94751958 -64847825 - B4 SINE B4 -94 198 71 7 1307 392 279 86 34 chr3 94751999 94752236 -64847547 - L1M2 LINE L1 -2713 3430 3155 7 1307 745 121 200 48 chr3 94752236 94752401 -64847382 - B2_Mm2 SINE B2 -5 190 1 7 1307 248 328 66 26 chr3 94752401 94752435 -64847348 - L1M2 LINE L1 -2732 3154 3125 7 1307 237 229 89 30 chr3 94752433 94752452 -64847331 - L1M2 LINE L1 -2946 3197 3179 7 1307 1091 70 28 0 chr3 94752452 94752594 -64847189 - B1_Mm SINE Alu 0 147 2 7 1307 237 229 89 30 chr3 94752594 94752709 -64847074 - L1M2 LINE L1 -2965 3178 3055 7 1307 183 42 0 0 chr3 94752710 94752734 -64847049 + (A)n Simple_repeat Simple_repeat 1 24 0 7 1307 577 186 0 10 chr3 94752734 94752837 -64846946 - B1_Mus2 SINE Alu -13 134 33 7 1307 414 226 96 0 chr3 94752846 94752952 -64846831 - L1M2 LINE L1 -3110 3033 2904 7 1307 1270 272 25 46 chr3 94752953 94753319 -64846464 + L1MA8 LINE L1 4317 4689 -1454 7 1307 1169 48 7 7 chr3 94753319 94753466 -64846317 + B1_Mus2 SINE Alu 1 147 0 7 1307 1270 272 25 46 chr3 94753466 94753623 -64846160 + L1MA8 LINE L1 4690 4829 -1314 7 1307 681 271 116 20 chr3 94753647 94754006 -64845777 + L1MA8 LINE L1 5586 5980 -176 7 1307 1032 72 43 0 chr3 94754148 94754286 -64845497 + B1_Mus1 SINE Alu 5 148 0 7 1307 372 305 21 28 chr3 94754529 94754674 -64845109 + B1F SINE Alu 5 148 -1 7 1307 270 222 153 57 chr3 94754725 94754849 -64844934 + RMER5 LTR ERV1 124 259 -275 7 1307 553 216 39 31 chr3 94755082 94755211 -64844572 - MTD LTR MaLR 0 419 290 7 1307 2559 179 77 32 chr3 94755212 94755742 -64844041 - RMER19B LTR ERVK 0 902 349 7 1307 1239 122 0 193 chr3 94755760 94756035 -64843748 - RMER19B LTR ERVK -680 222 1 7 1307 351 295 9 9 chr3 94756042 94756148 -64843635 - MTD LTR MaLR -150 257 152 7 1307 949 152 113 16 chr3 94759835 94760029 -64839754 + B3 SINE B2 1 213 -3 7 1307 419 170 208 65 chr3 94761241 94761347 -64838436 - PB1 SINE Alu 0 149 38 7 1307 316 278 30 40 chr3 94761514 94761615 -64838168 - B4A SINE B4 -116 176 77 7 1307 795 198 122 20 chr3 94761928 94762124 -64837659 - B3 SINE B2 0 216 1 7 1307 241 258 6 6 chr3 94762453 94762617 -64837166 + (CTGGGG)n Simple_repeat Simple_repeat 3 166 0 7 1307 301 344 38 15 chr3 94763546 94763679 -64836104 - MLT1K LTR MaLR -7 588 453 7 1307 365 335 99 63 chr3 94763732 94763955 -64835828 - MLT1K LTR MaLR -241 354 124 7 163 574 279 87 22 chr3 94764750 94765111 -64834672 - L1ME3B LINE L1 -173 6067 5675 7 1308 435 268 16 8 chr3 94765168 94765296 -64834487 - L1ME3B LINE L1 -2513 3633 3505 7 1308 532 127 248 26 chr3 94765306 94765419 -64834364 - B1_Mur2 SINE Alu 0 149 12 7 1308 446 170 244 26 chr3 94765542 94765657 -64834126 - B1_Mur1 SINE Alu -5 144 5 7 1308 321 85 0 0 chr3 94765884 94765919 -64833864 + (T)n Simple_repeat Simple_repeat 1 35 0 7 1308 1223 61 0 0 chr3 94765919 94766066 -64833717 - B1_Mus2 SINE Alu 0 147 1 7 1308 321 85 0 0 chr3 94766066 94766077 -64833706 + (T)n Simple_repeat Simple_repeat 1 11 0 7 1308 685 261 38 22 chr3 94766077 94766261 -64833522 - ID_B1 SINE B4 0 224 38 7 1308 217 316 0 0 chr3 94766221 94766278 -64833505 - ID4_ SINE ID -7 76 20 7 1308 769 195 0 15 chr3 94766330 94766460 -64833323 - B3 SINE B2 -87 129 2 7 1308 602 56 97 43 chr3 94766546 94766639 -64833144 - BGLII LTR ERVK 0 421 324 7 1308 1020 114 59 24 chr3 94766642 94766812 -64832971 - BGLII_Mus LTR ERVK -246 176 1 7 1308 325 292 0 0 chr3 94766839 94766911 -64832872 - PB1D7 SINE Alu -48 72 1 7 1308 230 0 33 0 chr3 94767007 94767037 -64832746 + (TTTTG)n Simple_repeat Simple_repeat 1 31 0 7 1308 393 294 66 7 chr3 94767048 94767185 -64832598 - B1F SINE Alu -4 145 1 7 1308 1109 90 0 0 chr3 94767399 94767544 -64832239 - B1_Mus2 SINE Alu -2 145 1 7 1308 1462 64 11 0 chr3 94767554 94767742 -64832041 - B2_Mm1a SINE B2 -3 190 1 7 1308 185 327 17 60 chr3 94767940 94768057 -64831726 - L3 LINE CR1 -656 3833 3722 7 1308 629 203 67 8 chr3 94768109 94768243 -64831540 + B1F SINE Alu 2 143 -6 7 1308 504 276 67 7 chr3 94768246 94768381 -64831402 + ID_B1 SINE B4 73 215 -9 7 1308 415 275 83 0 chr3 94768449 94768558 -64831225 + B3A SINE B2 58 175 -23 7 1308 342 0 0 0 chr3 94768559 94768597 -64831186 + (CA)n Simple_repeat Simple_repeat 1 38 0 7 1308 1022 74 82 0 chr3 94768646 94768781 -64831002 - B1_Mus2 SINE Alu 0 147 2 7 1308 1404 82 6 0 chr3 94769244 94769426 -64830357 - B2_Mm1t SINE B2 -9 184 2 7 1308 186 338 183 33 chr3 94769604 94769757 -64830026 - L2c LINE L2 -79 3308 3133 7 1308 1083 263 31 18 chr3 94770109 94770395 -64829388 + B4A SINE B4 1 290 -2 7 1308 353 211 14 0 chr3 94770812 94770883 -64828900 - ID4_ SINE ID -10 73 2 7 1308 419 272 10 0 chr3 94771181 94771284 -64828499 - B4A SINE B4 -84 208 105 7 1308 204 40 0 0 chr3 94771392 94771417 -64828366 + (TCTG)n Simple_repeat Simple_repeat 3 27 0 7 1308 1080 92 28 0 chr3 94771425 94771567 -64828216 - B1_Mus2 SINE Alu 0 147 2 7 1308 195 42 0 0 chr3 94771664 94771688 -64828095 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 7 1308 829 183 14 14 chr3 94771717 94771729 -64828054 - B1_Mur1 SINE Alu 0 149 138 7 1308 1248 48 0 0 chr3 94771729 94771876 -64827907 - B1_Mm SINE Alu 0 147 1 7 1308 829 183 14 14 chr3 94771876 94772007 -64827776 - B1_Mur1 SINE Alu -12 137 6 7 1308 555 299 26 0 chr3 94772033 94772187 -64827596 - RSINE1 SINE B4 -3 162 5 7 1308 1275 266 85 20 chr3 94772225 94772725 -64827058 - Lx7 LINE L1 0 7473 6916 7 1308 1426 77 0 44 chr3 94772750 94772954 -64826829 + B2_Mm2 SINE B2 1 195 0 8 1308 599 195 114 0 chr3 94773199 94773322 -64826461 + B1_Mur2 SINE Alu 10 146 -3 8 1308 689 286 15 45 chr3 94773409 94773607 -64826176 - B3A SINE B2 0 198 7 8 1308 915 260 19 0 chr3 94773622 94773830 -64825953 - B3 SINE B2 0 216 5 8 1308 301 298 76 116 chr3 94773858 94774018 -64825765 + MER112 DNA MER1_type 6 153 -108 8 1308 1082 70 21 7 chr3 94774018 94774161 -64825622 - B1_Mus2 SINE Alu 0 147 3 8 1308 301 298 76 116 chr3 94774161 94774224 -64825559 + MER112 DNA MER1_type 154 220 -41 8 1308 994 243 10 10 chr3 94774240 94774448 -64825335 - B3 SINE B2 -8 208 1 8 1308 818 290 4 79 chr3 94774448 94774688 -64825095 + B4 SINE B4 70 291 -1 8 1308 361 190 50 12 chr3 94774893 94774973 -64824810 + PB1D7 SINE Alu 22 104 -16 8 1308 665 143 185 0 chr3 94774973 94775092 -64824691 - B1_Mur2 SINE Alu -7 142 2 8 1308 305 261 131 52 chr3 94775110 94775377 -64824406 - Charlie1b DNA MER1_type -71 452 165 8 1308 930 129 194 0 chr3 94775454 94775640 -64824143 + URR1B DNA MER1_type 3 224 -1 8 1308 299 295 34 11 chr3 94775670 94775759 -64824024 + PB1D10 SINE Alu 21 111 -6 8 1308 325 291 25 0 chr3 94775766 94775845 -64823938 + ID4 SINE ID 1 81 -2 8 1308 1045 83 8 0 chr3 94775979 94776111 -64823672 - B1_Mus1 SINE Alu -14 134 2 8 1308 1619 47 0 0 chr3 94776210 94776402 -64823381 + B2_Mm1a SINE B2 2 193 0 8 1308 910 136 7 20 chr3 94776424 94776574 -64823209 + B1_Mur4 SINE Alu 2 149 -1 8 1308 297 182 61 0 chr3 94777217 94777283 -64822500 - B3A SINE B2 -127 71 2 8 1308 231 230 0 47 chr3 94777611 94777675 -64822108 + A-rich Low_complexity Low_complexity 4 64 0 8 1308 376 302 84 107 chr3 94777715 94777893 -64821890 + B4 SINE B4 50 223 -69 8 1308 942 104 44 0 chr3 94777759 94777894 -64821889 + B1_Mus1 SINE Alu 7 147 -1 8 1308 1228 74 0 0 chr3 94780783 94780931 -64818852 + B1_Mus1 SINE Alu 1 148 0 8 1308 1117 197 50 5 chr3 94781714 94781913 -64817870 - B3 SINE B2 -8 208 1 8 1308 180 97 0 0 chr3 94782791 94782822 -64816961 + (T)n Simple_repeat Simple_repeat 1 31 0 8 1308 1524 232 72 11 chr3 94783022 94783371 -64816412 - MTEa LTR MaLR 0 379 10 8 1308 261 54 0 0 chr3 94783821 94783853 -64815930 + (A)n Simple_repeat Simple_repeat 1 32 0 8 1308 1171 49 0 7 chr3 94783853 94783998 -64815785 + B1_Mm SINE Alu 4 147 0 8 1308 693 244 28 50 chr3 94784002 94784183 -64815600 - B4 SINE B4 -79 213 37 8 1308 283 308 77 0 chr3 94784387 94784491 -64815292 - PB1D10 SINE Alu -5 112 1 8 1308 307 246 0 0 chr3 94784432 94784493 -64815290 - ID_B1 SINE B4 -84 140 80 8 1308 369 296 33 66 chr3 94784553 94784705 -64815078 - RSINE1 SINE B4 -16 149 3 8 1308 264 333 0 27 chr3 94785008 94785024 -64814759 - BC1_Mm scRNA scRNA -44 108 93 8 1308 1197 48 7 0 chr3 94785024 94785171 -64814612 - B1_Mus1 SINE Alu 0 148 1 8 1308 324 312 0 14 chr3 94785171 94785265 -64814518 - ID4 SINE ID -60 92 1 8 1308 313 250 82 10 chr3 94785281 94785378 -64814405 - ID_B1 SINE B4 -4 220 117 8 1308 620 282 65 25 chr3 94785980 94786180 -64813603 + ID_B1 SINE B4 4 211 -13 8 1308 403 320 64 48 chr3 94786804 94786991 -64812792 - MIRb SINE MIR -8 260 71 8 1308 266 282 89 128 chr3 94787111 94787173 -64812610 + MT2B2 LTR ERVL 115 281 -298 8 1308 505 254 0 5 chr3 94787173 94787285 -64812498 + B1F SINE Alu 9 116 -32 8 1308 1238 54 0 0 chr3 94787427 94787574 -64812209 + B1_Mm SINE Alu 1 147 0 8 1308 546 284 62 12 chr3 94788950 94789135 -64810648 - MIR3 SINE MIR -3 205 4 8 1308 388 266 229 1 chr3 94789942 94790132 -64809651 - MIRb SINE MIR -9 259 23 8 1308 485 274 26 0 chr3 94792362 94792475 -64807308 - PB1D10 SINE Alu -1 116 1 8 1308 23 33 0 0 chr3 94793948 94793978 -64805805 + AT_rich Low_complexity Low_complexity 1 30 0 8 1308 195 176 77 19 chr3 94794294 94794346 -64805437 + MER5B DNA MER1_type 96 150 -28 8 1308 441 311 12 23 chr3 94794568 94794739 -64805044 + Lx8 LINE L1 7169 7337 -136 8 1308 1110 196 30 0 chr3 94794749 94794948 -64804835 + B3 SINE B2 1 205 -11 8 1308 734 151 0 56 chr3 94794965 94795091 -64804692 + PB1D9 SINE Alu 1 119 -1 8 1308 422 299 41 87 chr3 94795438 94795452 -64804331 + B4 SINE B4 69 151 -141 8 1308 758 222 0 20 chr3 94795452 94795599 -64804184 + B1_Mur1 SINE Alu 1 144 -5 8 1308 422 299 41 87 chr3 94795599 94795610 -64804173 + B4 SINE B4 152 232 -60 8 1308 532 277 50 14 chr3 94795740 94795879 -64803904 - B1F1 SINE Alu 0 149 6 8 1308 223 247 200 0 chr3 94795831 94795916 -64803867 - B4A SINE B4 -147 145 44 8 1308 487 172 10 31 chr3 94795891 94795987 -64803796 - PB1D10 SINE Alu -4 113 20 8 1308 1192 28 28 0 chr3 94797307 94797450 -64802333 - B1_Mus2 SINE Alu 0 147 1 8 1308 558 204 18 9 chr3 94798635 94798749 -64801034 + B3 SINE B2 2 116 -100 8 1308 341 338 149 49 chr3 94798768 94799138 -64800645 - L2c LINE L2 -63 3324 2918 8 1308 248 215 183 37 chr3 94799362 94799444 -64800339 + PB1D7 SINE Alu 3 96 -24 8 1308 286 259 0 0 chr3 94800111 94800165 -64799618 + ID4 SINE ID 29 82 -1 8 1308 466 291 43 0 chr3 94801159 94801276 -64798507 - ID_B1 SINE B4 -9 215 94 8 1308 827 257 43 5 chr3 94801390 94801597 -64798186 - B3 SINE B2 0 216 2 8 1308 481 286 52 15 chr3 94801601 94801736 -64798047 - B1F SINE Alu -9 140 1 8 1308 298 242 72 130 chr3 94801870 94802008 -64797775 - B1F SINE Alu 0 149 20 8 1308 1194 90 84 6 chr3 94802023 94802202 -64797581 - B2_Mm2 SINE B2 -1 194 2 8 1308 730 231 14 7 chr3 94802205 94802349 -64797434 - ID_B1 SINE B4 -2 222 78 8 1308 270 227 187 33 chr3 94802537 94802628 -64797155 + PB1D10 SINE Alu 9 113 -4 8 1308 803 193 0 0 chr3 94803358 94803493 -64796290 - B1_Mur2 SINE Alu -12 137 3 8 1308 444 216 103 0 chr3 94803746 94803843 -64795940 - B3 SINE B2 -13 203 97 8 1308 1081 15 122 0 chr3 94803929 94804060 -64795723 + B1_Mm SINE Alu 1 147 0 8 1308 1047 205 28 32 chr3 94804127 94804344 -64795439 - B3 SINE B2 0 216 1 8 1308 628 258 114 15 chr3 94804380 94804581 -64795202 + ID_B1 SINE B4 2 222 -2 8 1308 1282 34 0 0 chr3 94804887 94805034 -64794749 - B1_Mm SINE Alu 0 147 1 8 1308 765 151 33 8 chr3 94805059 94805179 -64794604 - B3 SINE B2 -93 123 1 8 1308 1053 195 67 0 chr3 94805287 94805482 -64794301 - B3 SINE B2 -3 213 6 8 1308 294 279 0 0 chr3 94805517 94805578 -64794205 + ID4_ SINE ID 22 82 -1 8 1308 247 137 299 52 chr3 94805601 94805678 -64794105 + ID_B1 SINE B4 128 223 -1 8 1308 1188 48 0 14 chr3 94806237 94806385 -64793398 + B1_Mm SINE Alu 1 146 -1 8 1308 238 244 0 0 chr3 94806912 94806957 -64792826 + B1F SINE Alu 10 54 -95 8 1308 328 300 114 96 chr3 94806995 94807095 -64792688 + B4 SINE B4 1 85 -207 8 1308 1130 97 7 0 chr3 94807095 94807240 -64792543 + B1_Mus2 SINE Alu 2 147 0 8 1308 328 300 114 96 chr3 94807240 94807419 -64792364 + B4 SINE B4 86 285 -7 8 1308 517 221 67 9 chr3 94807499 94807604 -64792179 + B1_Mur1 SINE Alu 26 136 -13 8 1308 457 316 82 25 chr3 94807758 94807917 -64791866 - ID_B1 SINE B4 -33 191 24 8 1308 234 0 0 0 chr3 94810485 94810511 -64789272 + (T)n Simple_repeat Simple_repeat 1 26 0 8 1308 1240 92 87 0 chr3 94813738 94813911 -64785872 + B2_Mm2 SINE B2 2 189 -6 8 1308 240 149 0 0 chr3 94819292 94819339 -64780444 + (CCG)n Simple_repeat Simple_repeat 3 49 0 8 1308 21 0 0 0 chr3 94820474 94820495 -64779288 + GC_rich Low_complexity Low_complexity 1 21 0 8 1308 307 339 23 23 chr3 94820900 94821030 -64778753 + MIRb SINE MIR 63 192 -76 8 1308 486 284 16 39 chr3 94821231 94821359 -64778424 + ID_B1 SINE B4 100 224 0 8 1308 255 227 69 49 chr3 94821473 94821575 -64778208 - MIR SINE MIR -87 175 72 8 1308 239 272 8 109 chr3 94821666 94821794 -64777989 - YREP_Mm Unknown Unknown -1476 336 222 8 1308 486 260 0 9 chr3 94821696 94821801 -64777982 + ID_B1 SINE B4 81 184 -40 8 1308 532 125 56 11 chr3 94821801 94821890 -64777893 - ORR1D2 LTR MaLR 0 370 278 8 1308 345 146 164 27 chr3 94821905 94822013 -64777770 - B2_Mm2 SINE B2 -7 186 47 8 1308 1243 82 41 0 chr3 94822060 94822231 -64777552 - B2_Mm1t SINE B2 -14 179 2 8 1308 895 223 83 0 chr3 94822232 94822425 -64777358 - ORR1D2 LTR MaLR -161 209 1 8 1308 235 363 123 0 chr3 94822591 94822770 -64777013 - L2a LINE L2 -204 3222 3022 8 1308 195 129 0 0 chr3 94822912 94822943 -64776840 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 8 1308 422 271 36 36 chr3 94822957 94823068 -64776715 + PB1D10 SINE Alu 1 111 -9 8 1308 879 225 49 15 chr3 94823082 94823285 -64776498 + B3 SINE B2 4 213 -3 8 1308 431 226 9 62 chr3 94823829 94823942 -64775841 + PB1D9 SINE Alu 2 108 -12 8 1308 279 0 0 0 chr3 94824030 94824061 -64775722 + (CA)n Simple_repeat Simple_repeat 2 32 0 8 1308 368 221 52 0 chr3 94824171 94824248 -64775535 - ID4_ SINE ID -1 82 2 8 1308 723 241 85 18 chr3 94824268 94824433 -64775350 - B3A SINE B2 -22 176 1 8 1308 1036 183 29 19 chr3 94824484 94824690 -64775093 - B3 SINE B2 -8 208 1 8 1308 276 278 112 69 chr3 94824692 94824703 -64775080 - PB1 SINE Alu -1 126 116 9 1308 180 77 0 0 chr3 94824703 94824729 -64775054 + (TTTG)n Simple_repeat Simple_repeat 1 26 0 9 1308 276 278 112 69 chr3 94824729 94824741 -64775042 - PB1 SINE Alu -12 115 6 9 1308 291 276 22 54 chr3 94824741 94824833 -64774950 - ID_B1 SINE B4 -49 175 87 9 1308 550 260 96 25 chr3 94824869 94825066 -64774717 + ID_B1 SINE B4 5 215 -9 9 1308 1619 32 0 11 chr3 94825105 94825295 -64774488 + B2_Mm1a SINE B2 1 188 -5 9 1308 230 56 0 27 chr3 94825352 94825389 -64774394 + (GTTTG)n Simple_repeat Simple_repeat 2 37 0 9 1308 666 193 27 48 chr3 94825393 94825540 -64774243 - B1_Mur4 SINE Alu -6 144 1 9 1308 538 241 0 26 chr3 94825580 94825695 -64774088 + B1_Mur4 SINE Alu 38 149 -1 9 1308 348 64 0 0 chr3 94825977 94826024 -64773759 + (TG)n Simple_repeat Simple_repeat 2 48 0 9 1308 1112 65 0 0 chr3 94826235 94826374 -64773409 - B1_Mus2 SINE Alu 0 147 9 9 1308 593 220 68 112 chr3 94826240 94826445 -64773338 - B4 SINE B4 -71 221 26 9 1308 529 264 56 21 chr3 94826599 94826742 -64773041 + RSINE1 SINE B4 4 151 -14 9 1308 25 0 0 0 chr3 94826800 94826825 -64772958 + AT_rich Low_complexity Low_complexity 1 25 0 9 1308 483 110 14 14 chr3 94826827 94826901 -64772882 - B1_Mus2 SINE Alu -71 76 3 9 1308 436 182 13 13 chr3 94826836 94826914 -64772869 - B4A SINE B4 -140 152 75 9 1308 359 216 97 105 chr3 94826901 94826951 -64772832 - MT2B2 LTR ERVL -351 233 111 9 1308 225 303 10 29 chr3 94827107 94827209 -64772574 - L1M5 LINE L1 -875 5271 5172 9 1308 415 267 28 28 chr3 94827332 94827434 -64772349 + B1F2 SINE Alu 1 102 -47 9 1308 213 39 0 0 chr3 94827434 94827460 -64772323 + (TAAA)n Simple_repeat Simple_repeat 1 26 0 9 1308 572 252 8 0 chr3 94827463 94827586 -64772197 + ID_B1 SINE B4 99 222 -2 9 1308 234 278 70 63 chr3 94827470 94827612 -64772171 - YREP_Mm Unknown Unknown -1520 292 150 9 1308 296 268 9 85 chr3 94827612 94827685 -64772098 - L1MB5 LINE L1 -47 6127 6062 9 1308 1251 76 87 0 chr3 94827685 94827857 -64771926 - B2_Mm2 SINE B2 -8 187 1 9 1308 296 268 9 85 chr3 94827857 94827889 -64771894 - L1MB5 LINE L1 -113 6061 6030 9 1308 234 190 165 0 chr3 94827928 94828007 -64771776 - L1MB5 LINE L1 -229 5949 5858 9 1308 1067 63 0 47 chr3 94828022 94828171 -64771612 - B1_Mm SINE Alu 0 147 6 9 1308 3971 151 99 90 chr3 94828169 94828771 -64771012 - RMER19B LTR ERVK -16 886 234 9 1308 3786 112 196 86 chr3 94828771 94829584 -64770199 - RMER17A2 LTR ERVK -4 902 1 9 1308 3971 151 99 90 chr3 94829584 94829859 -64769924 - RMER19B LTR ERVK -669 233 1 9 1308 812 255 170 0 chr3 94829873 94830108 -64769675 - Lx6 LINE L1 -27 7433 7159 9 1308 889 148 106 28 chr3 94830170 94830350 -64769433 - B2_Mm2 SINE B2 -1 194 1 9 1308 512 143 118 45 chr3 94830432 94830542 -64769241 - PB1D9 SINE Alu -1 119 2 9 1308 501 244 35 0 chr3 94830940 94831055 -64768728 - PB1D9 SINE Alu 0 120 2 9 1308 234 91 67 22 chr3 94831311 94831356 -64768427 + B3A SINE B2 3 49 -149 9 1308 806 199 7 0 chr3 94831548 94831689 -64768094 - B1_Mus1 SINE Alu -2 146 5 9 1308 531 136 11 22 chr3 94832297 94832387 -64767396 + B1_Mur4 SINE Alu 61 149 -1 9 1308 237 108 0 0 chr3 94832387 94832424 -64767359 + (CA)n Simple_repeat Simple_repeat 2 38 0 9 1308 222 185 246 0 chr3 94832587 94832652 -64767131 + PB1D10 SINE Alu 35 115 -2 9 1308 439 325 26 32 chr3 94832709 94832865 -64766918 + RSINE1 SINE B4 11 165 0 9 1308 332 93 0 0 chr3 94832874 94832917 -64766866 + HAL1-3A_ME LINE L1 1980 2022 -836 9 1308 296 186 119 64 chr3 94833025 94833134 -64766649 + B1_Mm SINE Alu 25 139 -8 9 1308 340 264 57 11 chr3 94833186 94833274 -64766509 + B4A SINE B4 18 109 -183 9 1308 1504 63 16 0 chr3 94833324 94833515 -64766268 + B2_Mm2 SINE B2 1 194 -1 9 1308 683 260 70 32 chr3 94833735 94833922 -64765861 + B3 SINE B2 19 212 -4 9 1308 816 223 90 5 chr3 94833967 94834156 -64765627 + B3 SINE B2 2 206 -10 9 1308 446 348 51 13 chr3 94834178 94834335 -64765448 + RSINE1 SINE B4 3 165 0 9 1308 616 171 102 8 chr3 94834377 94834495 -64765288 + B1_Mur2 SINE Alu 1 129 -20 9 1308 263 270 48 72 chr3 94834589 94834692 -64765091 + PB1D10 SINE Alu 11 112 -5 9 1308 348 264 48 0 chr3 94834853 94834957 -64764826 + PB1D7 SINE Alu 1 113 -7 9 1308 211 337 67 44 chr3 94835272 94835362 -64764421 - RSINE1 SINE B4 -16 149 58 9 1308 933 190 88 11 chr3 94835375 94835560 -64764223 + B3 SINE B2 5 185 -31 9 1308 822 138 14 48 chr3 94835560 94835705 -64764078 - B1_Mur3 SINE Alu 0 149 10 9 1308 401 276 140 75 chr3 94835578 94835778 -64764005 - B4 SINE B4 -79 213 1 9 1308 575 241 60 0 chr3 94835795 94835928 -64763855 + B1_Mur1 SINE Alu 1 141 -8 9 1308 428 63 0 31 chr3 94835928 94835993 -64763790 + (CATA)n Simple_repeat Simple_repeat 2 64 0 9 1308 1547 38 32 5 chr3 94836092 94836279 -64763504 + B2_Mm1a SINE B2 2 193 0 9 1308 1234 41 0 0 chr3 94836324 94836470 -64763313 - B1_Mus1 SINE Alu 0 148 3 9 1308 1371 98 0 40 chr3 94837968 94838170 -64761613 + B2_Mm2 SINE B2 1 194 -1 9 1308 683 182 138 12 chr3 94839455 94839622 -64760161 + URR1A DNA MER1_type 8 195 -31 9 1308 971 103 0 35 chr3 94839920 94840061 -64759722 - B1_Mus2 SINE Alu -1 146 11 9 1308 692 182 236 23 chr3 94840101 94840275 -64759508 + B3 SINE B2 5 215 -1 9 1308 231 255 0 18 chr3 94840303 94840359 -64759424 + ID_B1 SINE B4 166 220 -4 9 1308 1031 72 14 7 chr3 94840791 94840931 -64758852 + B1_Mus1 SINE Alu 8 148 0 9 1308 1339 64 40 6 chr3 94840956 94841129 -64758654 - B2_Mm2 SINE B2 -14 181 3 9 1308 608 282 0 0 chr3 94841147 94841289 -64758494 + ID_B1 SINE B4 82 223 -1 9 1308 827 53 9 17 chr3 94841701 94841816 -64757967 - B1_Mur4 SINE Alu 0 150 37 9 1308 291 100 46 77 chr3 94841761 94841826 -64757957 - 4.5SRNA scRNA scRNA -8 86 24 9 1308 677 262 73 0 chr3 94841841 94842032 -64757751 - B3 SINE B2 -11 205 1 9 1308 542 300 56 14 chr3 94842116 94842258 -64757525 - RSINE1 SINE B4 -10 155 8 9 1308 251 281 125 0 chr3 94842289 94842353 -64757430 + MIRb SINE MIR 169 240 -28 9 1308 310 219 132 12 chr3 94842845 94842928 -64756855 + PB1D9 SINE Alu 25 117 -3 9 1308 316 257 40 0 chr3 94843110 94843184 -64756599 + ID4 SINE ID 4 80 -3 9 1308 297 283 152 0 chr3 94843210 94843302 -64756481 + PB1 SINE Alu 9 114 -13 9 1308 455 106 0 0 chr3 94843360 94843426 -64756357 + B1_Mur3 SINE Alu 1 66 -83 9 1308 486 0 0 0 chr3 94843427 94843481 -64756302 + (GAAA)n Simple_repeat Simple_repeat 1 54 0 9 1308 326 275 38 0 chr3 94843514 94843594 -64756189 - ID_B1 SINE B4 -55 169 87 9 1308 1195 55 7 0 chr3 94843920 94844066 -64755717 - B1_Mus2 SINE Alu 0 147 1 9 1308 483 246 55 0 chr3 94844076 94844186 -64755597 - PB1D10 SINE Alu 0 117 2 9 1308 1671 21 11 0 chr3 94844656 94844846 -64754937 + B2_Mm1t SINE B2 2 193 0 9 1308 227 203 0 17 chr3 94844862 94844922 -64754861 + MER53 DNA hAT 20 78 -115 9 1308 1224 35 0 0 chr3 94845017 94845160 -64754623 + B1_Mus2 SINE Alu 5 147 0 9 1308 807 153 76 0 chr3 94845297 94845428 -64754355 - B1_Mur4 SINE Alu -8 142 2 9 1308 379 151 0 140 chr3 94845449 94845549 -64754234 - MER53 DNA hAT -88 105 20 9 1308 274 277 128 0 chr3 94845543 94845637 -64754146 - PB1D10 SINE Alu -5 112 7 9 1308 239 268 140 96 chr3 94845670 94845719 -64754064 + ID_B1 SINE B4 80 221 -3 9 1308 249 241 11 92 chr3 94845719 94845806 -64753977 + B1_Mur1 SINE Alu 68 147 -2 9 1308 300 270 0 13 chr3 94845839 94845914 -64753869 + ID4 SINE ID 10 83 0 9 1308 180 0 0 0 chr3 94847139 94847159 -64752624 + (A)n Simple_repeat Simple_repeat 1 20 0 9 1308 808 217 23 29 chr3 94847262 94847433 -64752350 - B3A SINE B2 -27 171 2 9 1308 625 193 31 63 chr3 94847502 94847629 -64752154 + B1_Mur2 SINE Alu 22 144 -5 9 1308 612 302 7 3 chr3 94847740 94847897 -64751886 + B3A SINE B2 2 155 -61 9 1308 474 75 0 0 chr3 94847897 94847964 -64751819 + (CA)n Simple_repeat Simple_repeat 2 68 0 9 1308 495 362 5 39 chr3 94847964 94848013 -64751770 + B3 SINE B2 156 201 -15 9 1308 226 232 96 15 chr3 94848061 94848139 -64751644 + BC1_Mm scRNA scRNA 5 89 -63 9 1308 899 130 14 0 chr3 94848174 94848312 -64751471 + B1_Mus1 SINE Alu 2 141 -7 9 1308 906 196 49 5 chr3 94848484 94848508 -64751275 - B2_Mm2 SINE B2 -1 194 171 9 1308 853 226 34 10 chr3 94848508 94848714 -64751069 - B3 SINE B2 -1 215 5 9 1308 906 196 49 5 chr3 94848714 94848726 -64751057 - B2_Mm2 SINE B2 -25 170 156 9 1308 604 26 0 0 chr3 94848726 94848804 -64750979 + L1Md_T LINE L1 6505 6582 0 9 1308 906 196 49 5 chr3 94848804 94848951 -64750832 - B2_Mm2 SINE B2 -40 155 4 9 1308 702 233 46 26 chr3 94848966 94849160 -64750623 - B3A SINE B2 0 198 1 9 1308 459 0 0 0 chr3 94849183 94849234 -64750549 + (TG)n Simple_repeat Simple_repeat 2 52 0 9 1308 1454 58 32 0 chr3 94849328 94849516 -64750267 - B2_Mm2 SINE B2 -1 194 1 9 1308 293 261 272 0 chr3 94849516 94849608 -64750175 - RSINE1 SINE B4 -45 120 4 9 1308 828 186 100 18 chr3 94849642 94849812 -64749971 - MTE2a LTR MaLR 0 379 196 9 1308 880 152 14 14 chr3 94849852 94849999 -64749784 + B1_Mus1 SINE Alu 2 148 0 9 1308 376 237 0 50 chr3 94850013 94850093 -64749690 - MTE2a LTR MaLR -291 88 13 9 1308 359 225 70 70 chr3 94850205 94850334 -64749449 + MT2B LTR ERVL 129 257 -344 1 1308 709 112 9 0 chr3 94850270 94850377 -64749406 + B1_Mus2 SINE Alu 39 146 -1 1 1308 252 270 50 217 chr3 94850705 94850808 -64748975 - MTE-int LTR MaLR 0 1580 1487 1 1308 1003 122 0 7 chr3 94850808 94850956 -64748827 + B1_Mus1 SINE Alu 2 148 0 1 1308 324 200 53 34 chr3 94850956 94851045 -64748738 - MTE-int LTR MaLR -39 1331 1253 1 1308 1273 97 32 0 chr3 94851047 94851233 -64748550 + B2_Mm2 SINE B2 2 193 -2 1 1308 512 127 37 15 chr3 94851234 94851358 -64748425 + B1_Mus2 SINE Alu 25 150 0 1 1308 435 217 136 40 chr3 94851373 94851498 -64748285 + B1_Mur1 SINE Alu 2 138 -11 1 1308 670 195 0 82 chr3 94851507 94851619 -64748164 + B1_Mur4 SINE Alu 28 139 -11 1 1308 189 0 0 0 chr3 94851619 94851640 -64748143 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 1 1308 670 195 0 82 chr3 94851640 94851661 -64748122 + B1_Mur4 SINE Alu 140 150 0 1 1308 933 268 45 32 chr3 94851676 94851994 -64747789 - MTE-int LTR MaLR -454 1509 954 1 1308 247 353 23 46 chr3 94852079 94852156 -64747627 - MTE-int LTR MaLR -813 767 697 1 1308 443 230 261 7 chr3 94852156 94852309 -64747474 - B3A SINE B2 -6 192 1 1 1308 247 353 23 46 chr3 94852309 94852406 -64747377 - MTE-int LTR MaLR -884 696 598 1 1308 421 288 125 5 chr3 94852431 94852623 -64747160 - MTE-int LTR MaLR -1179 401 187 1 1308 252 271 123 33 chr3 94852633 94852657 -64747126 - ID_B1 SINE B4 0 224 92 1 1308 566 174 31 0 chr3 94852657 94852755 -64747028 - PB1D9 SINE Alu -9 111 11 1 1308 710 309 26 22 chr3 94852854 94853122 -64746661 + MTE-int LTR MaLR 68 336 -1244 1 1308 248 70 0 23 chr3 94853124 94853168 -64746615 + (TTTTTG)n Simple_repeat Simple_repeat 1 43 0 1 1308 290 164 164 0 chr3 94853212 94853279 -64746504 - MTE2b LTR MaLR 0 379 302 1 1308 418 158 66 21 chr3 94853288 94853381 -64746402 - B1_Mur2 SINE Alu -13 136 47 1 1308 320 226 108 113 chr3 94853388 94853573 -64746210 + B4A SINE B4 98 281 -11 1 1308 2306 144 79 8 chr3 94853599 94853978 -64745805 + MTC LTR MaLR 16 421 0 1 1308 309 211 0 0 chr3 94854147 94854199 -64745584 - B4A SINE B4 -158 134 83 1 1308 669 295 138 8 chr3 94854200 94854236 -64745547 + MTE-int LTR MaLR 856 892 -688 1 1308 551 289 25 25 chr3 94854236 94854399 -64745384 + RSINE1 SINE B4 3 165 0 1 1308 1187 61 0 16 chr3 94854409 94854592 -64745191 + (CA)n Simple_repeat Simple_repeat 1 180 0 1 1308 669 295 138 8 chr3 94854592 94854783 -64745000 + MTE-int LTR MaLR 905 1124 -456 1 1308 989 69 8 0 chr3 94854792 94854922 -64744861 + B1_Mus1 SINE Alu 9 139 -9 1 1308 233 0 62 0 chr3 94854922 94854954 -64744829 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 1 1308 566 243 52 7 chr3 94854975 94854991 -64744792 + B3A SINE B2 1 16 -182 1 1308 1350 181 152 47 chr3 94854991 94855333 -64744450 + ORR1C1 LTR MaLR 1 378 0 1 1308 566 244 53 9 chr3 94855333 94855473 -64744310 + B3A SINE B2 17 158 -40 1 1308 416 35 0 17 chr3 94855473 94855532 -64744251 + (CA)n Simple_repeat Simple_repeat 1 58 0 1 1308 396 272 65 104 chr3 94855532 94855575 -64744208 + B2_Mm2 SINE B2 157 192 -3 1 1308 1692 194 98 10 chr3 94855577 94855739 -64744044 + MTC LTR MaLR 2 180 -241 1 1308 1236 41 0 0 chr3 94855739 94855884 -64743899 - B1_Mus2 SINE Alu 0 147 3 1 1308 1692 194 98 10 chr3 94855884 94856107 -64743676 + MTC LTR MaLR 181 421 0 1 1308 232 273 12 94 chr3 94856137 94856222 -64743561 + B1F SINE Alu 22 99 -50 1 1308 354 267 30 177 chr3 94856244 94856408 -64743375 + B3A SINE B2 56 195 -3 1 1308 1350 69 46 0 chr3 94856411 94856586 -64743197 + B2_Mm2 SINE B2 1 183 -12 1 1308 951 25 8 0 chr3 94856586 94856704 -64743079 + B1_Mm SINE Alu 29 147 0 1 1308 838 148 0 0 chr3 94856748 94856876 -64742907 - B2_Mm2 SINE B2 -66 129 2 1 1308 543 230 88 82 chr3 94856905 94857052 -64742731 + B1_Mur2 SINE Alu 2 149 0 1 1308 3850 200 71 114 chr3 94857249 94858621 -64741162 + L1_Rod LINE L1 4431 5744 -103 1 1308 436 288 70 64 chr3 94858625 94858670 -64741113 + RLTR18B LTR ERVK 28 70 -442 1 1308 800 178 20 7 chr3 94858670 94858817 -64740966 - B1_Mur3 SINE Alu 0 149 1 1 1308 436 288 70 64 chr3 94858817 94858942 -64740841 + RLTR18B LTR ERVK 71 199 -313 1 1308 707 331 114 36 chr3 94858943 94859303 -64740480 + RLTR18B LTR ERVK 123 510 -2 1 1308 580 278 52 17 chr3 94859333 94859505 -64740278 + RLTR18-int LTR ERVK 4 181 -5180 1 1308 1089 103 24 6 chr3 94859507 94859673 -64740110 + B2_Mm2 SINE B2 5 173 -22 1 1308 357 149 0 3 chr3 94859695 94859764 -64740019 + B2_Mm2 SINE B2 35 102 -91 1 1308 541 192 34 171 chr3 94859871 94860047 -64739736 + B4 SINE B4 70 221 -71 1 1308 1119 35 0 21 chr3 94859908 94860053 -64739730 + B1_Mus2 SINE Alu 6 147 0 1 1308 219 36 0 0 chr3 94860053 94860081 -64739702 + (A)n Simple_repeat Simple_repeat 1 28 0 1 1308 923 136 0 0 chr3 94860109 94860241 -64739542 + B3 SINE B2 1 132 -84 1 1308 422 47 62 0 chr3 94860242 94860306 -64739477 + L1_Mus1 LINE L1 6500 6567 0 1 1308 1405 238 72 32 chr3 94860340 94860782 -64739001 + Lx9 LINE L1 5592 6051 -1593 1 1308 654 170 104 0 chr3 94860935 94861070 -64738713 + B1_Mur4 SINE Alu 2 150 0 1 1308 561 206 238 18 chr3 94861091 94861259 -64738524 - B3 SINE B2 -10 206 2 1 1308 3507 25 2 2 chr3 94861272 94861668 -64738115 + MTA_Mm LTR MaLR 1 396 0 1 1308 1072 141 38 5 chr3 94861695 94861880 -64737903 + B2_Mm2 SINE B2 3 193 -2 1 1308 498 33 0 0 chr3 94861948 94862008 -64737775 + (GGAAA)n Simple_repeat Simple_repeat 3 62 0 1 1308 210 71 0 0 chr3 94863494 94863522 -64736261 + (T)n Simple_repeat Simple_repeat 1 28 0 1 1308 583 176 244 0 chr3 94864166 94864285 -64735498 - B1_Mur1 SINE Alu 0 149 2 1 1308 419 202 0 25 chr3 94864614 94864695 -64735088 + RSINE1 SINE B4 2 80 -85 1 1308 308 338 43 0 chr3 94864755 94864894 -64734889 + B1F SINE Alu 4 148 -1 1 1308 259 294 59 84 chr3 94864903 94865008 -64734775 + B1_Mm SINE Alu 3 104 -43 1 1308 252 316 79 0 chr3 94865008 94865084 -64734699 + ID4_ SINE ID 2 83 0 1 1308 933 123 7 46 chr3 94865088 94865241 -64734542 + B1_Mus1 SINE Alu 2 148 0 1 1308 1391 74 16 0 chr3 94865317 94865506 -64734277 + B2_Mm1t SINE B2 2 193 0 1 1308 572 313 27 0 chr3 94865521 94865671 -64734112 - RSINE1 SINE B4 -1 164 11 1 1308 262 324 0 0 chr3 94865747 94865815 -64733968 - ID_B1 SINE B4 -75 149 82 1 1308 300 215 231 0 chr3 94865927 94866048 -64733735 - B1F2 SINE Alu 0 149 1 1 1308 1089 109 0 7 chr3 94866168 94866316 -64733467 + B1_Mus2 SINE Alu 1 147 0 1 1308 1195 68 0 0 chr3 94866318 94866465 -64733318 + B1_Mus2 SINE Alu 1 147 0 1 1308 195 69 0 0 chr3 94866468 94866497 -64733286 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1 1308 479 284 67 8 chr3 94866504 94866657 -64733126 + MLT1F2 LTR MaLR 397 560 -9 1 1308 225 0 0 0 chr3 94866974 94866999 -64732784 + (TC)n Simple_repeat Simple_repeat 1 25 0 1 1308 252 0 0 0 chr3 94866999 94867026 -64732757 + (CA)n Simple_repeat Simple_repeat 1 28 0 1 1308 597 364 38 52 chr3 94867026 94867313 -64732470 + MLT1F2 LTR MaLR 228 510 -50 1 1308 1081 97 41 24 chr3 94867300 94867469 -64732314 - B2_Mm2 SINE B2 -3 192 21 1 1308 540 217 42 28 chr3 94867810 94867952 -64731831 + B1F SINE Alu 5 148 -1 1 1308 1141 81 0 7 chr3 94867956 94868105 -64731678 + B1_Mus1 SINE Alu 1 148 0 1 1308 218 32 32 0 chr3 94868106 94868137 -64731646 + (CAAAC)n Simple_repeat Simple_repeat 2 33 0 1 1308 198 103 0 0 chr3 94869636 94869665 -64730118 + (A)n Simple_repeat Simple_repeat 1 29 0 1 1308 266 203 34 0 chr3 94870113 94870172 -64729611 + B1F1 SINE Alu 89 149 0 1 1308 482 222 294 0 chr3 94870265 94870391 -64729392 + RSINE1 SINE B4 3 165 0 1 1308 370 269 12 98 chr3 94870767 94870825 -64728958 + MT2B LTR ERVL 115 243 -358 1 1308 771 67 10 0 chr3 94870825 94870925 -64728858 + B1_Mus2 SINE Alu 1 101 -46 1 1308 758 235 73 24 chr3 94870925 94871089 -64728694 + B3 SINE B2 2 164 -52 1 1308 370 269 12 98 chr3 94870929 94870940 -64728843 + MT2B LTR ERVL 244 272 -329 1 1308 651 112 0 0 chr3 94871089 94871187 -64728596 + (TA)n Simple_repeat Simple_repeat 1 98 0 1 1308 758 235 73 24 chr3 94871187 94871227 -64728556 + B3 SINE B2 165 216 0 1 1308 194 91 0 29 chr3 94872318 94872352 -64727431 + (TAA)n Simple_repeat Simple_repeat 2 34 0 1 1308 212 369 46 0 chr3 94872374 94872439 -64727344 - FLAM_A SINE Alu -218 77 10 1 1308 1237 41 7 0 chr3 94872463 94872608 -64727175 - B1_Mm SINE Alu -1 146 1 1 1308 1380 108 0 5 chr3 94872657 94872853 -64726930 + B2_Mm2 SINE B2 1 195 0 1 1308 480 286 157 0 chr3 94872926 94873111 -64726672 + ID_B1 SINE B4 3 216 -8 1 1308 407 207 23 68 chr3 94873893 94873981 -64725802 + B1_Mur4 SINE Alu 10 93 -57 1 1308 883 172 70 12 chr3 94874120 94874291 -64725492 + URR1B DNA MER1_type 1 181 -44 1 1308 457 220 44 0 chr3 94874295 94874386 -64725397 + B4A SINE B4 192 286 -6 1 1308 180 0 0 0 chr3 94874484 94874504 -64725279 + (CAAA)n Simple_repeat Simple_repeat 4 23 0 1 1308 248 297 65 125 chr3 94874735 94874935 -64724848 + RLTRETN_Mm LTR ERVK 41 228 -94 1 1308 582 140 1 31 chr3 94875169 94875279 -64724504 + B2_Mm2 SINE B2 2 109 -84 1 1308 1141 88 0 0 chr3 94875286 94875434 -64724349 + B1_Mus1 SINE Alu 1 148 0 1 1308 465 320 60 33 chr3 94875478 94875662 -64724121 + ID_B1 SINE B4 26 214 -10 1 1308 1304 20 0 0 chr3 94876043 94876190 -64723593 + B1_Mus2 SINE Alu 1 147 0 1 1308 198 0 0 0 chr3 94876190 94876212 -64723571 + (A)n Simple_repeat Simple_repeat 1 22 0 1 1308 618 193 34 26 chr3 94876642 94876759 -64723024 - PB1D9 SINE Alu -2 118 1 1 1308 286 305 38 95 chr3 94876679 94876784 -64722999 - B4A SINE B4 -123 169 71 1 1308 274 210 97 0 chr3 94876760 94876822 -64722961 - B3 SINE B2 -3 213 146 1 1308 256 83 42 0 chr3 94876834 94876882 -64722901 + (TC)n Simple_repeat Simple_repeat 1 50 0 1 1308 784 231 43 6 chr3 94876919 94877080 -64722703 - B3 SINE B2 -46 170 4 1 1308 1337 115 5 0 chr3 94877090 94877281 -64722502 - B2_Mm2 SINE B2 -2 193 2 1 1308 1305 100 5 31 chr3 94877329 94877525 -64722258 - B2_Mm1t SINE B2 -1 192 2 1 1308 455 255 104 58 chr3 94877561 94877715 -64722068 - RSINE1 SINE B4 -1 164 4 1 1308 218 279 230 11 chr3 94878100 94878187 -64721596 + B1F SINE Alu 3 108 -12 1 1308 267 274 53 27 chr3 94878226 94878301 -64721482 + ID_B1 SINE B4 93 169 -55 1 1308 249 327 51 93 chr3 94878301 94878344 -64721439 + PB1D10 SINE Alu 12 124 -25 1 1308 1244 35 7 0 chr3 94878579 94878723 -64721060 + B1_Mus1 SINE Alu 3 147 -1 1 1308 336 24 0 0 chr3 94878912 94878953 -64720830 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 1308 234 91 0 0 chr3 94879154 94879187 -64720596 + (GAAA)n Simple_repeat Simple_repeat 2 34 0 1 1308 670 258 75 45 chr3 94879188 94879387 -64720396 + B3 SINE B2 1 205 -11 1 1308 822 140 19 71 chr3 94879439 94879593 -64720190 + B1_Mur4 SINE Alu 5 150 0 1 1308 1014 73 44 0 chr3 94879622 94879758 -64720025 + B1_Mus2 SINE Alu 6 147 0 1 1308 224 122 0 24 chr3 94879760 94879802 -64719981 + (GAA)n Simple_repeat Simple_repeat 2 42 0 1 1308 408 225 25 12 chr3 94879826 94879988 -64719795 + GA-rich Low_complexity Low_complexity 1 164 0 1 1308 474 276 0 30 chr3 94880037 94880168 -64719615 + B3A SINE B2 1 127 -71 1 1308 363 203 0 60 chr3 94880148 94880232 -64719551 + ID_B1 SINE B4 145 223 -1 1 1308 183 80 0 0 chr3 94880234 94880259 -64719524 + (CAG)n Simple_repeat Simple_repeat 2 26 0 1 1308 332 361 0 46 chr3 94880265 94880416 -64719367 + ID_B1 SINE B4 81 224 0 1 1308 560 139 78 180 chr3 94880443 94880567 -64719216 - B2_Mm2 SINE B2 -45 150 37 1 1308 955 67 89 7 chr3 94880567 94880702 -64719081 - B1_Mm SINE Alu 0 147 2 1 1308 560 139 78 180 chr3 94880702 94880744 -64719039 - B2_Mm2 SINE B2 -159 36 1 1 1308 642 242 38 0 chr3 94880746 94880878 -64718905 + B1_Mur2 SINE Alu 12 148 -1 1 1308 1242 86 74 6 chr3 94880885 94881061 -64718722 + B2_Mm2 SINE B2 3 190 -5 1 1308 742 164 35 35 chr3 94881197 94881255 -64718528 + B1_Mur2 SINE Alu 5 63 -86 1 1308 2297 172 79 25 chr3 94881255 94881697 -64718086 + RMER4A LTR ERVK 1 466 0 1 1308 742 164 35 35 chr3 94881697 94881783 -64718000 + B1_Mur2 SINE Alu 64 149 0 1 1308 476 239 16 41 chr3 94881826 94881948 -64717835 + PB1D7 SINE Alu 2 120 0 1 1308 275 288 62 48 chr3 94882134 94882280 -64717503 + B1F1 SINE Alu 2 149 0 1 1308 607 207 231 0 chr3 94882349 94882518 -64717265 + B3 SINE B2 3 210 -6 1 1308 837 212 112 61 chr3 94882550 94882746 -64717037 + B3 SINE B2 6 211 -5 1 1308 240 207 50 16 chr3 94882777 94882838 -64716945 + B1_Mur3 SINE Alu 87 149 0 1 1308 1246 48 0 0 chr3 94882847 94882994 -64716789 + B1_Mus2 SINE Alu 1 147 0 1 1308 204 194 0 0 chr3 94882994 94883047 -64716736 + A-rich Low_complexity Low_complexity 9 61 0 1 1308 261 0 0 0 chr3 94883189 94883218 -64716565 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1 1308 511 189 0 32 chr3 94883285 94883400 -64716383 + PB1D9 SINE Alu 5 114 -6 1 1308 1394 74 16 21 chr3 94883598 94883792 -64715991 + B2_Mm2 SINE B2 2 194 -1 1 1308 515 224 9 9 chr3 94884000 94884108 -64715675 - RSINE1 SINE B4 -37 128 21 1 1308 276 316 44 0 chr3 94884109 94884223 -64715560 + PB1D9 SINE Alu 2 120 0 1 1308 859 176 7 26 chr3 94884227 94884379 -64715404 + B1_Mur4 SINE Alu 2 150 0 1 1308 310 258 113 47 chr3 94884635 94884741 -64715042 + ID_B1 SINE B4 90 202 -22 1 1308 264 296 114 53 chr3 94884741 94884767 -64715016 + B1F1 SINE Alu 9 148 -1 1 1308 350 336 14 35 chr3 94884926 94885071 -64714712 + B1_Mus1 SINE Alu 5 146 -2 1 1308 588 290 27 49 chr3 94885071 94885296 -64714487 + ID_B1 SINE B4 2 221 -3 1 1308 571 214 61 54 chr3 94885343 94885491 -64714292 + B1_Mur3 SINE Alu 1 149 0 1 1308 347 354 106 90 chr3 94885527 94885600 -64714183 + B4A SINE B4 44 126 -166 1 1308 1155 102 85 0 chr3 94885600 94885777 -64714006 + B2_Mm1t SINE B2 1 192 -1 1 1308 347 354 106 90 chr3 94885777 94885948 -64713835 + B4A SINE B4 127 291 -1 1 1308 372 43 0 0 chr3 94885971 94886017 -64713766 + (CAAAA)n Simple_repeat Simple_repeat 2 47 0 1 1308 644 219 73 49 chr3 94886017 94886201 -64713582 + B1_Mur3 SINE Alu 6 311 0 1 1308 552 137 167 0 chr3 94886223 94886325 -64713458 + PB1D9 SINE Alu 1 119 -1 1 1308 244 179 26 0 chr3 94886394 94886472 -64713311 + CT-rich Low_complexity Low_complexity 2 81 0 1 1308 713 263 50 22 chr3 94886494 94886673 -64713110 - RMER30 DNA MER1_type -2 200 17 1 1308 571 305 93 5 chr3 94886499 94886703 -64713080 + Charlie12 DNA MER1_type 7 228 -2645 1 1308 470 83 68 14 chr3 94886888 94886961 -64712822 - BC1_Mm scRNA scRNA -72 80 4 1 1308 548 301 13 19 chr3 94887086 94887245 -64712538 - RSINE1 SINE B4 -5 160 3 1 1308 937 138 0 20 chr3 94887267 94887415 -64712368 - B1_Mus2 SINE Alu -1 146 2 1 1308 332 325 8 95 chr3 94887504 94887630 -64712153 + PB1D10 SINE Alu 1 115 -2 1 1308 217 392 7 82 chr3 94887510 94887657 -64712126 + ID_B1 SINE B4 88 223 -1 1 1308 463 314 113 51 chr3 94887665 94887860 -64711923 + ID_B1 SINE B4 18 224 0 1 1308 683 171 12 121 chr3 94887912 94888078 -64711705 + B1_Mus1 SINE Alu 1 148 0 1 1308 768 201 0 7 chr3 94888674 94888814 -64710969 + B1_Mm SINE Alu 2 140 -7 1 1308 248 306 43 43 chr3 94888845 94888961 -64710822 - PB1 SINE Alu -11 116 1 1 1308 230 109 35 35 chr3 94889296 94889353 -64710430 + (TTTG)n Simple_repeat Simple_repeat 3 59 0 1 1308 263 209 219 79 chr3 94889382 94889496 -64710287 + RSINE1 SINE B4 1 130 -35 1 1308 1652 32 0 0 chr3 94889547 94889733 -64710050 - B2_Mm1a SINE B2 -6 187 2 1 1308 380 303 66 29 chr3 94889844 94889980 -64709803 - ID_B1 SINE B4 0 224 84 1 1308 243 0 0 0 chr3 94890291 94890318 -64709465 + (CA)n Simple_repeat Simple_repeat 1 27 0 1 1308 555 255 0 51 chr3 94890332 94890489 -64709294 + B1_Mur2 SINE Alu 1 149 0 1 1308 395 234 62 55 chr3 94890568 94890713 -64709070 + B1F1 SINE Alu 4 149 0 1 1308 981 75 43 36 chr3 94890723 94890862 -64708921 + B1_Mur4 SINE Alu 1 140 -10 1 1308 297 51 0 0 chr3 94890862 94890901 -64708882 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 1 1308 732 232 0 0 chr3 94890902 94891044 -64708739 + B1_Mur2 SINE Alu 1 142 -7 1 1308 990 128 14 0 chr3 94891166 94891307 -64708476 - B1_Mus1 SINE Alu -3 145 3 1 1308 26 0 0 0 chr3 94891307 94891333 -64708450 + AT_rich Low_complexity Low_complexity 1 26 0 1 1308 333 313 40 10 chr3 94891360 94891460 -64708323 + PB1D10 SINE Alu 15 117 0 1 1308 22 0 0 0 chr3 94891502 94891524 -64708259 + AT_rich Low_complexity Low_complexity 1 22 0 1 1308 1139 172 39 0 chr3 94891655 94891858 -64707925 + B3 SINE B2 2 212 -4 1 1308 215 194 0 0 chr3 94892142 94892178 -64707605 + ID2 SINE ID 47 82 -1 1 1308 485 301 14 14 chr3 94892613 94892758 -64707025 - B1F SINE Alu -2 147 3 1 1308 234 259 11 23 chr3 94892805 94892892 -64706891 + A-rich Low_complexity Low_complexity 5 90 0 1 1308 609 245 58 0 chr3 94893270 94893409 -64706374 + B1_Mus1 SINE Alu 2 148 0 1 1308 1265 40 0 0 chr3 94893450 94893598 -64706185 + B1_Mus1 SINE Alu 1 148 0 1 1308 337 290 100 0 chr3 94893614 94893714 -64706069 - PB1D7 SINE Alu -10 110 1 1 1308 207 0 0 0 chr3 94893754 94893777 -64706006 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 1 1308 768 273 29 0 chr3 94893799 94893971 -64705812 + B3 SINE B2 40 216 0 1 1308 25 31 0 0 chr3 94893991 94894023 -64705760 + AT_rich Low_complexity Low_complexity 1 32 0 1 1308 574 240 84 58 chr3 94894130 94894158 -64705625 - B2_Mm2 SINE B2 0 195 172 1 1308 1624 47 0 0 chr3 94894158 94894351 -64705432 - B2_Mm1a SINE B2 0 193 1 1 1308 574 240 84 58 chr3 94894351 94894512 -64705271 - B2_Mm2 SINE B2 -24 171 1 1 1308 1656 36 0 10 chr3 94894654 94894849 -64704934 - B2_Mm1t SINE B2 0 193 1 1 1308 583 189 115 50 chr3 94894893 94895032 -64704751 - B1_Mur4 SINE Alu -2 148 1 1 1308 1010 217 14 38 chr3 94895042 94895054 -64704729 - B3 SINE B2 -7 209 195 1 1308 300 70 0 0 chr3 94895054 94895097 -64704686 + (TA)n Simple_repeat Simple_repeat 2 44 0 1 1308 1010 217 14 38 chr3 94895097 94895295 -64704488 - B3 SINE B2 -22 194 4 1 1308 243 0 0 0 chr3 94895359 94895386 -64704397 + (TCTG)n Simple_repeat Simple_repeat 2 28 0 1 1308 220 133 22 0 chr3 94895433 94895478 -64704305 + (CCAA)n Simple_repeat Simple_repeat 1 46 0 1 1308 534 192 239 44 chr3 94895838 94896018 -64703765 + B3 SINE B2 1 215 -1 1 1309 4806 39 2 0 chr3 94896168 94896732 -64703051 - L1Md_T LINE L1 0 6582 6018 1 1309 615 262 65 101 chr3 94896834 94896930 -64702853 + B4 SINE B4 31 172 -120 1 1309 756 109 36 0 chr3 94896930 94897040 -64702743 + B1_Mus1 SINE Alu 33 146 -2 1 1309 615 262 65 101 chr3 94897040 94897119 -64702664 + B4 SINE B4 173 292 0 1 1309 797 118 67 0 chr3 94897176 94897295 -64702488 - B1_Mus1 SINE Alu -19 129 3 1 1309 240 306 32 0 chr3 94897371 94897433 -64702350 + ID_B1 SINE B4 86 149 -75 1 1309 838 35 83 41 chr3 94897433 94897554 -64702229 + B1_Mus1 SINE Alu 22 147 -1 1 1309 1192 75 0 0 chr3 94897719 94897865 -64701918 + B1_Mm SINE Alu 2 147 0 1 1309 343 227 89 0 chr3 94897957 94898050 -64701733 - PB1D10 SINE Alu -6 114 12 1 1309 972 226 58 14 chr3 94898093 94898300 -64701483 - B3 SINE B2 0 216 1 1 1309 1043 153 31 31 chr3 94898372 94898397 -64701386 - B2_Mm2 SINE B2 0 195 172 1 1309 909 9 0 0 chr3 94898397 94898511 -64701272 - L1Md_A LINE L1 0 6582 6469 1 1309 1043 153 31 31 chr3 94898511 94898680 -64701103 - B2_Mm2 SINE B2 -24 171 1 1 1309 398 294 0 12 chr3 94898680 94898764 -64701019 - B1F SINE Alu -65 84 2 1 1309 574 214 7 79 chr3 94899057 94899209 -64700574 + B3A SINE B2 58 198 0 1 1309 303 301 19 0 chr3 94899899 94900002 -64699781 + PB1D10 SINE Alu 5 109 -8 1 1309 619 165 15 76 chr3 94900018 94900149 -64699634 + B1_Mus1 SINE Alu 26 148 0 1 1309 409 374 7 33 chr3 94900153 94900284 -64699499 + ID_B1 SINE B4 72 200 -24 1 1309 228 67 0 0 chr3 94900284 94900314 -64699469 + (TA)n Simple_repeat Simple_repeat 2 31 0 1 1309 409 374 7 33 chr3 94900314 94900334 -64699449 + ID_B1 SINE B4 201 219 -5 1 1309 966 62 77 15 chr3 94900344 94900474 -64699309 + B1_Mm SINE Alu 1 138 -9 1 1309 934 24 167 0 chr3 94900675 94900801 -64698982 + B1_Mm SINE Alu 1 147 0 1 1309 583 239 8 33 chr3 94900847 94900968 -64698815 + RSINE1 SINE B4 2 119 -46 1 1309 1174 124 11 6 chr3 94901597 94901775 -64698008 + B2_Mm1t SINE B2 1 179 -14 1 1309 366 122 310 26 chr3 94901822 94901938 -64697845 + B2_Mm2 SINE B2 47 195 0 1 1309 186 43 0 0 chr3 94902044 94902067 -64697716 + (TTCC)n Simple_repeat Simple_repeat 3 25 0 1 1309 684 248 7 14 chr3 94902067 94902214 -64697569 - B1_Mur2 SINE Alu -2 147 2 1 1309 356 263 47 107 chr3 94902324 94902473 -64697310 - B1F2 SINE Alu -5 144 5 1 1309 203 175 0 0 chr3 94902624 94902664 -64697119 + A-rich Low_complexity Low_complexity 2 41 0 1 1309 528 258 96 24 chr3 94902921 94903088 -64696695 + B3A SINE B2 15 193 -5 1 1309 766 113 0 0 chr3 94903422 94903528 -64696255 + U6 snRNA snRNA 2 107 0 1 1309 1397 95 50 5 chr3 94903528 94903750 -64696033 + L1_Mus3 LINE L1 6407 6638 0 1 1309 216 0 0 0 chr3 94903763 94903787 -64695996 + (ATTG)n Simple_repeat Simple_repeat 2 25 0 1 1309 328 281 10 10 chr3 94903856 94903960 -64695823 - PB1D10 SINE Alu -12 105 2 1 1309 456 91 0 0 chr3 94903994 94904060 -64695723 + (CA)n Simple_repeat Simple_repeat 1 66 0 1 1309 477 252 0 31 chr3 94904104 94904231 -64695552 + B1_Mur1 SINE Alu 27 149 0 1 1309 399 318 45 0 chr3 94904260 94904370 -64695413 + PB1D10 SINE Alu 3 117 0 1 1309 430 297 71 45 chr3 94904989 94905144 -64694639 + RSINE1 SINE B4 4 162 -3 1 1309 23 0 0 0 chr3 94905152 94905175 -64694608 + AT_rich Low_complexity Low_complexity 1 23 0 1 1309 834 157 49 21 chr3 94905186 94905317 -64694466 + B1_Mus1 SINE Alu 2 139 -9 1 1309 207 0 0 0 chr3 94905317 94905340 -64694443 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 1309 834 157 49 21 chr3 94905340 94905351 -64694432 + B1_Mus1 SINE Alu 140 148 0 1 1309 858 163 7 14 chr3 94905516 94905659 -64694124 + B1_Mus1 SINE Alu 7 148 0 1 1309 531 246 57 14 chr3 94905940 94906080 -64693703 + B1_Mur1 SINE Alu 3 148 -1 1 1309 886 125 0 0 chr3 94906466 94906594 -64693189 + B1_Mus2 SINE Alu 8 135 -12 1 1309 643 186 129 0 chr3 94906613 94906737 -64693046 + B1F2 SINE Alu 3 142 -7 1 1309 594 41 0 0 chr3 94906741 94906814 -64692969 + (GAAA)n Simple_repeat Simple_repeat 2 74 0 1 1309 1192 75 0 0 chr3 94906824 94906971 -64692812 + B1_Mus2 SINE Alu 1 147 0 1 1309 336 189 0 0 chr3 94906973 94907047 -64692736 + A-rich Low_complexity Low_complexity 1 74 0 1 1309 229 282 91 34 chr3 94907073 94907161 -64692622 + ID_B1 SINE B4 92 184 -40 1 1309 762 157 22 22 chr3 94907155 94907292 -64692491 + B1_Mur2 SINE Alu 13 149 0 1 1309 285 121 81 65 chr3 94907323 94907385 -64692398 + B3A SINE B2 80 142 -56 1 1309 504 303 23 8 chr3 94907420 94907553 -64692230 - B1_Mur2 SINE Alu -2 147 13 1 1309 1684 32 0 0 chr3 94907593 94907783 -64692000 + B2_Mm1a SINE B2 1 190 -3 1 1309 713 181 31 0 chr3 94907886 94908013 -64691770 + B1_Mur3 SINE Alu 2 132 -17 1 1309 390 165 0 0 chr3 94908092 94908110 -64691673 + A-rich Low_complexity Low_complexity 1 18 0 1 1309 1039 90 28 7 chr3 94908110 94908255 -64691528 + B1_Mus1 SINE Alu 1 148 0 1 1309 390 165 0 0 chr3 94908255 94908279 -64691504 + A-rich Low_complexity Low_complexity 19 42 0 1 1309 1280 20 7 0 chr3 94908279 94908425 -64691358 + B1_Mus2 SINE Alu 1 147 0 1 1309 390 165 0 0 chr3 94908425 94908460 -64691323 + A-rich Low_complexity Low_complexity 43 77 0 1 1309 283 296 52 61 chr3 94908472 94908587 -64691196 + RSINE1 SINE B4 8 121 -44 1 1309 1063 69 20 20 chr3 94908852 94908984 -64690799 + B1_Mus2 SINE Alu 1 135 -12 1 1309 297 0 0 0 chr3 94908984 94909017 -64690766 + (TAAAA)n Simple_repeat Simple_repeat 2 34 0 1 1309 1063 69 20 20 chr3 94909017 94909031 -64690752 + B1_Mus2 SINE Alu 136 147 0 1 1309 259 312 0 0 chr3 94909912 94909976 -64689807 - ID4_ SINE ID -19 64 1 1 1309 1643 42 0 0 chr3 94911487 94911679 -64688104 - B2_Mm1a SINE B2 0 193 2 1 1309 1122 68 0 20 chr3 94912777 94912927 -64686856 + B1_Mus1 SINE Alu 2 148 0 1 1309 198 118 0 0 chr3 94913610 94913644 -64686139 + (CAAAAA)n Simple_repeat Simple_repeat 3 36 0 1 1309 286 265 0 0 chr3 94913754 94913822 -64685961 + ID4_ SINE ID 5 72 -11 1 1309 252 0 0 0 chr3 94913833 94913861 -64685922 + (CA)n Simple_repeat Simple_repeat 2 29 0 1 1309 180 0 0 0 chr3 94913864 94913884 -64685899 + (CAAAAA)n Simple_repeat Simple_repeat 3 22 0 1 1309 619 286 7 7 chr3 94913990 94914138 -64685645 + RSINE1 SINE B4 18 165 0 1 1309 1188 68 0 30 chr3 94914168 94914334 -64685449 - B2_Mm2 SINE B2 -7 188 28 1 1309 369 143 5 184 chr3 94914302 94914408 -64685375 + B2_Mm1t SINE B2 87 175 -18 1 1309 1134 82 0 0 chr3 94914408 94914554 -64685229 - B1_Mus1 SINE Alu -1 147 2 1 1309 349 118 0 234 chr3 94914554 94914582 -64685201 + B2_Mm2 SINE B2 172 195 0 1 1309 758 158 22 8 chr3 94914628 94914762 -64685021 + B1_Mur1 SINE Alu 13 148 -1 1 1309 391 207 7 7 chr3 94915270 94915411 -64684372 + (TG)n Simple_repeat Simple_repeat 2 142 0 1 1309 1322 7 0 0 chr3 94915583 94915729 -64684054 + B1_Mm SINE Alu 2 147 0 1 1309 243 79 0 0 chr3 94915729 94915767 -64684016 + (A)n Simple_repeat Simple_repeat 1 38 0 1 1309 213 286 26 79 chr3 94916112 94916188 -64683595 + ID2 SINE ID 12 83 0 1 1309 579 268 60 13 chr3 94916302 94916453 -64683330 - RSINE1 SINE B4 -6 159 2 1 1309 437 217 64 41 chr3 94916649 94916765 -64683018 - B1_Mm SINE Alu 0 147 1 1 1309 30 0 0 0 chr3 94916824 94916854 -64682929 + AT_rich Low_complexity Low_complexity 1 30 0 1 1309 596 199 220 12 chr3 94916860 94917033 -64682750 - B3 SINE B2 -6 210 2 1 1309 242 255 211 11 chr3 94917070 94917083 -64682700 - PB1D10 SINE Alu 0 117 105 1 1309 1273 27 0 13 chr3 94917083 94917233 -64682550 - B1_Mus1 SINE Alu 0 148 1 1 1309 258 255 211 11 chr3 94917233 94917314 -64682469 - B1F1 SINE Alu -13 104 4 1 1309 180 226 0 0 chr3 94918084 94918115 -64681668 - L4 LINE RTE -206 1823 1793 1 1309 1182 98 8 37 chr3 94918159 94918358 -64681425 + B2_Mm2 SINE B2 2 189 -4 1 1309 854 243 29 19 chr3 94919109 94919319 -64680464 + B3 SINE B2 2 213 -3 1 1309 1034 53 105 0 chr3 94919345 94919478 -64680305 + B1_Mus2 SINE Alu 1 147 0 1 1309 278 230 161 0 chr3 94919630 94919717 -64680066 - RSINE1 SINE B4 -21 144 44 1 1309 508 244 74 30 chr3 94920005 94920140 -64679643 + ID_B1 SINE B4 84 224 0 1 1309 816 242 26 112 chr3 94920140 94920328 -64679455 + B3A SINE B2 1 173 -25 1 1309 216 0 0 0 chr3 94920328 94920352 -64679431 + (CA)n Simple_repeat Simple_repeat 1 24 0 1 1309 713 242 26 112 chr3 94920352 94920396 -64679387 + B3 SINE B2 170 213 -3 1 1309 1388 69 21 5 chr3 94920432 94920622 -64679161 - B2_Mm1t SINE B2 0 193 1 1 1309 183 178 0 0 chr3 94920696 94920723 -64679060 + T-rich Low_complexity Low_complexity 19 45 0 1 1309 683 177 55 34 chr3 94920723 94920869 -64678914 - B1_Mur1 SINE Alu 0 149 1 1 1309 183 178 0 0 chr3 94920869 94920886 -64678897 + T-rich Low_complexity Low_complexity 2 18 0 1 1309 613 245 174 0 chr3 94921036 94921220 -64678563 - B3 SINE B2 0 216 1 1 1309 388 244 0 0 chr3 94921223 94921305 -64678478 - ID_B1 SINE B4 0 224 143 1 1309 384 123 45 0 chr3 94921361 94921439 -64678344 - B3 SINE B2 -113 85 1 1 1309 670 297 7 0 chr3 94921441 94921596 -64678187 - ID_B1 SINE B4 -67 157 2 1 1309 589 254 29 0 chr3 94921695 94921833 -64677950 - B1F SINE Alu 0 149 8 1 1309 325 286 53 9 chr3 94922364 94922477 -64677306 - PB1D9 SINE Alu -2 118 1 1 1309 510 61 0 0 chr3 94922743 94922809 -64676974 + (TG)n Simple_repeat Simple_repeat 1 66 0 1 1309 576 211 27 34 chr3 94922861 94923008 -64676775 + B1_Mus2 SINE Alu 2 147 0 1 1309 459 222 40 0 chr3 94923497 94923596 -64676187 + PB1D9 SINE Alu 1 103 -17 1 1309 290 375 0 0 chr3 94923730 94923818 -64675965 + PB1D10 SINE Alu 2 89 -28 1 1309 597 149 198 36 chr3 94924222 94924389 -64675394 + B2_Mm2 SINE B2 2 195 0 1 1309 1109 85 0 0 chr3 94924403 94924544 -64675239 + B1_Mus1 SINE Alu 2 142 -6 1 1309 276 30 0 0 chr3 94924544 94924577 -64675206 + (GA)n Simple_repeat Simple_repeat 2 34 0 1 1309 1663 26 5 0 chr3 94924614 94924806 -64674977 - B2_Mm1t SINE B2 0 193 1 1 1309 535 204 19 0 chr3 94924809 94924912 -64674871 + PB1D9 SINE Alu 16 120 0 1 1309 505 281 108 15 chr3 94924957 94925087 -64674696 + RSINE1 SINE B4 13 154 -11 1 1309 509 248 72 14 chr3 94925829 94925968 -64673815 - B1F2 SINE Alu -2 147 1 1 1309 21 0 0 0 chr3 94925968 94925989 -64673794 + AT_rich Low_complexity Low_complexity 1 21 0 1 1309 901 185 107 5 chr3 94926006 94926202 -64673581 - B3 SINE B2 0 216 1 1 1309 773 74 19 0 chr3 94926875 94926983 -64672800 + B1_Mus1 SINE Alu 39 148 0 1 1309 186 43 0 0 chr3 94926983 94927006 -64672777 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1 1309 357 330 9 0 chr3 94927008 94927117 -64672666 - PB1 SINE Alu -14 113 4 1 1309 2794 58 84 11 chr3 94927235 94927604 -64672179 - MTA_Mm LTR MaLR 0 396 1 1 1309 356 216 109 29 chr3 94927700 94927838 -64671945 - B4A SINE B4 -27 265 117 1 1309 854 137 29 7 chr3 94927900 94928040 -64671743 - B1_Mus1 SINE Alu 0 148 6 1 1309 494 293 9 0 chr3 94930041 94930157 -64669626 - PB1D10 SINE Alu 0 117 1 1 1309 851 163 8 0 chr3 94930558 94930687 -64669096 - B1_Mur4 SINE Alu -19 131 2 1 1309 399 127 0 0 chr3 94930696 94930759 -64669024 + (T)n Simple_repeat Simple_repeat 1 63 0 1 1309 1246 48 0 0 chr3 94930759 94930906 -64668877 - B1_Mus2 SINE Alu 0 147 1 1 1309 189 0 0 0 chr3 94932027 94932048 -64667735 + (CA)n Simple_repeat Simple_repeat 1 21 0 1 1309 872 164 7 27 chr3 94934392 94934542 -64665241 - B1_Mus1 SINE Alu -1 147 1 1 1309 1297 24 157 0 chr3 94934588 94934735 -64665048 + B2_Mm1a SINE B2 2 160 -33 1 1309 243 0 0 0 chr3 94934735 94934762 -64665021 + (TAAA)n Simple_repeat Simple_repeat 3 29 0 1 1309 1297 24 157 0 chr3 94934762 94934780 -64665003 + B2_Mm1a SINE B2 161 191 -2 1 1309 850 129 269 6 chr3 94934818 94934989 -64664794 + B3 SINE B2 1 216 0 1 1309 3733 103 35 22 chr3 94935030 94935607 -64664176 + MT2B2 LTR ERVL 1 584 0 1 1309 1190 55 7 0 chr3 94935656 94935802 -64663981 - B1_Mus1 SINE Alu -1 147 1 1 1309 678 203 8 8 chr3 94935834 94935953 -64663830 + B1_Mur2 SINE Alu 2 120 -29 1 1309 697 190 47 47 chr3 94935995 94936188 -64663595 - B2_Mm2 SINE B2 -1 194 2 1 1309 1131 36 51 0 chr3 94936261 94936399 -64663384 + B1_Mus1 SINE Alu 3 147 -1 1 1309 1307 73 0 0 chr3 94936454 94936618 -64663165 - B2_Mm2 SINE B2 -31 164 1 1 1309 27 0 0 0 chr3 94938062 94938089 -64661694 + AT_rich Low_complexity Low_complexity 1 27 0 1 1309 222 233 190 0 chr3 94939186 94939261 -64660522 - MIRb SINE MIR -163 105 15 1 1309 188 67 33 0 chr3 94939264 94939294 -64660489 + (TGGGGG)n Simple_repeat Simple_repeat 2 32 0 1 1309 207 370 76 0 chr3 94939945 94940037 -64659746 + L2c LINE L2 3251 3349 -38 1 1309 819 150 24 0 chr3 94940076 94940203 -64659580 + B1_Mus2 SINE Alu 2 131 -16 1 1309 282 323 20 50 chr3 94940205 94940306 -64659477 + PB1D10 SINE Alu 1 98 -19 1 1309 257 288 30 0 chr3 94940592 94940658 -64659125 - ID4 SINE ID -11 72 5 1 1309 474 259 35 18 chr3 94940676 94940790 -64658993 - PB1D9 SINE Alu -2 118 3 1 1309 621 175 8 77 chr3 94940783 94940913 -64658870 + B1_Mus1 SINE Alu 1 121 -27 1 1309 318 205 128 35 chr3 94940913 94940999 -64658784 - B3 SINE B2 -34 182 89 1 1309 1133 95 0 0 chr3 94940988 94941135 -64658648 - B2_Mm2 SINE B2 -48 147 1 1 1309 300 170 0 0 chr3 94941136 94941189 -64658594 + Charlie1b DNA MER1_type 465 517 -6 1 1309 969 126 28 7 chr3 94945014 94945158 -64654625 - B1_Mur3 SINE Alu 0 149 3 1 1309 258 291 87 55 chr3 94945223 94945365 -64654418 + B3A SINE B2 69 209 -7 1 1309 417 223 0 112 chr3 94946806 94946922 -64652861 + MT2B LTR ERVL 162 264 -337 1 1309 791 168 0 8 chr3 94946828 94946954 -64652829 + B1_Mus2 SINE Alu 19 143 -4 1 1309 322 327 45 0 chr3 94946951 94947061 -64652722 + B3 SINE B2 91 205 -11 1 1309 601 296 51 51 chr3 94947162 94947358 -64652425 + B3A SINE B2 1 196 -2 1 1309 222 136 0 0 chr3 94947394 94947438 -64652345 + (TTTC)n Simple_repeat Simple_repeat 1 44 0 1 1309 1097 88 0 52 chr3 94947438 94947593 -64652190 - B1_Mus2 SINE Alu 0 147 1 1 1309 234 246 79 92 chr3 94947594 94947670 -64652113 - B4 SINE B4 -27 265 191 1 1309 884 228 247 8 chr3 94947672 94947915 -64651868 - MTC LTR MaLR -8 413 113 1 1309 332 301 47 28 chr3 94947917 94947933 -64651850 + ID_B1 SINE B4 70 177 -47 1 1309 418 236 22 11 chr3 94947933 94948023 -64651760 + B1_Mur2 SINE Alu 9 99 -50 1 1309 418 146 305 0 chr3 94948047 94948129 -64651654 - B1_Mur4 SINE Alu -43 107 1 1 1309 258 299 0 103 chr3 94948129 94948169 -64651614 - B4 SINE B4 -208 84 55 1 1309 396 267 127 86 chr3 94949662 94949825 -64649958 + B4A SINE B4 63 228 -64 1 1309 367 152 0 0 chr3 94949825 94949891 -64649892 + Lx4A LINE L1 6986 7051 -7 1 1309 366 80 0 0 chr3 94949891 94949941 -64649842 + (TAA)n Simple_repeat Simple_repeat 3 52 0 1 1309 396 267 127 86 chr3 94949941 94949997 -64649786 + B4A SINE B4 229 291 -1 1 1309 1274 181 161 11 chr3 94949999 94950433 -64649350 + RMER4B LTR ERVK 1 538 -47 1 1309 1019 133 72 6 chr3 94950435 94950601 -64649182 + B2_Mm2 SINE B2 5 181 -14 1 1309 918 155 14 0 chr3 94950647 94950795 -64648988 - B1_Mur4 SINE Alu 0 150 1 1 1309 210 108 54 0 chr3 94950798 94950835 -64648948 - B3A SINE B2 -159 39 1 1 1309 875 246 65 9 chr3 94950835 94951049 -64648734 - B4A SINE B4 -62 230 5 1 1309 234 302 0 55 chr3 94951130 94951221 -64648562 + ID_B1 SINE B4 97 182 -42 1 1309 868 130 12 110 chr3 94951410 94951574 -64648209 - B1_Mur4 SINE Alu 0 150 3 1 1309 342 0 0 0 chr3 94951602 94951640 -64648143 + (TTAA)n Simple_repeat Simple_repeat 3 40 0 1 1309 1255 84 19 86 chr3 94951727 94951936 -64647847 - B2_Mm2 SINE B2 0 195 1 1 1309 200 402 81 12 chr3 94951951 94952112 -64647671 + L2 LINE L2 1959 2130 -1289 1 1309 816 148 16 0 chr3 94952404 94952526 -64647257 + B1_Mur1 SINE Alu 18 141 -8 1 1309 308 274 49 105 chr3 94953147 94953290 -64646493 - B1F1 SINE Alu -13 136 2 1 1309 219 156 0 0 chr3 94953547 94953579 -64646204 + B1F1 SINE Alu 62 93 -56 1 1309 707 163 132 0 chr3 94953684 94953813 -64645970 + B1_Mur4 SINE Alu 1 146 -4 1 1309 180 0 0 0 chr3 94953813 94953833 -64645950 + (TAA)n Simple_repeat Simple_repeat 1 20 0 1 1309 542 230 143 0 chr3 94953860 94953986 -64645797 - B1_Mur1 SINE Alu 0 149 6 1 1309 1637 37 0 0 chr3 94954018 94954208 -64645575 - B2_Mm1t SINE B2 0 193 4 1 1309 762 11 0 0 chr3 94954208 94954295 -64645488 + (TTTC)n Simple_repeat Simple_repeat 3 89 0 1 1309 1151 72 0 0 chr3 94954296 94954434 -64645349 - B1_Mus1 SINE Alu -10 138 1 1 1309 454 178 53 9 chr3 94954484 94954584 -64645199 - B1F SINE Alu -7 113 12 1 1309 464 280 72 0 chr3 94954641 94954766 -64645017 - ID_B1 SINE B4 0 224 91 1 1309 1168 88 9 5 chr3 94954885 94955104 -64644679 + (TCTCC)n Simple_repeat Simple_repeat 1 220 0 1 1309 569 207 107 0 chr3 94955106 94955227 -64644556 - B1_Mus1 SINE Alu -14 134 1 1 1309 579 256 44 137 chr3 94955380 94955519 -64644264 - B4 SINE B4 -70 222 93 1 1309 970 159 7 0 chr3 94955519 94955664 -64644119 - B1_Mur4 SINE Alu 0 150 5 1 1309 579 256 44 137 chr3 94955664 94955750 -64644033 - B4 SINE B4 -200 92 18 1 1309 729 167 18 0 chr3 94955874 94955988 -64643795 + B1_Mus2 SINE Alu 31 146 -1 1 1309 764 284 87 25 chr3 94956042 94956317 -64643466 + B4A SINE B4 1 292 0 1 1309 633 123 42 34 chr3 94956379 94956497 -64643286 + B1F2 SINE Alu 1 119 -30 1 1309 225 255 24 134 chr3 94956519 94956646 -64643137 - L2b LINE L2 -248 3127 3015 1 1309 2250 127 250 21 chr3 94956713 94957181 -64642602 - RMER15 LTR ERVL 0 575 1 1 1309 286 156 78 0 chr3 94957188 94957252 -64642531 + PB1D10 SINE Alu 49 117 0 1 1309 1230 55 0 0 chr3 94957269 94957414 -64642369 + B1_Mus1 SINE Alu 1 145 -3 1 1309 189 0 0 0 chr3 94957416 94957437 -64642346 + (A)n Simple_repeat Simple_repeat 1 21 0 1 1309 992 68 0 29 chr3 94957448 94957584 -64642199 + B2_Mm2 SINE B2 2 133 -62 1 1309 360 0 0 0 chr3 94957588 94957628 -64642155 + (CA)n Simple_repeat Simple_repeat 1 40 0 1 1309 297 75 0 0 chr3 94957628 94957668 -64642115 + (GA)n Simple_repeat Simple_repeat 1 40 0 1 1309 894 199 7 0 chr3 94957687 94957833 -64641950 + B1_Mur2 SINE Alu 1 147 -2 1 1309 614 282 55 6 chr3 94957903 94958067 -64641716 + B3 SINE B2 32 203 -13 1 1309 232 319 43 32 chr3 94958076 94958170 -64641613 + B1F1 SINE Alu 10 104 -45 1 1309 543 211 23 16 chr3 94958171 94958306 -64641477 + B1F1 SINE Alu 2 135 -14 1 1309 303 339 33 50 chr3 94958367 94958488 -64641295 + PB1 SINE Alu 7 125 -2 1 1309 1185 70 0 0 chr3 94958533 94958676 -64641107 + B1_Mus2 SINE Alu 2 144 -3 1 1309 279 0 0 0 chr3 94958676 94958707 -64641076 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 1 1309 281 326 88 71 chr3 94958927 94959165 -64640618 + B4A SINE B4 33 274 -18 1 1309 538 163 0 11 chr3 94959174 94959261 -64640522 + B1_Mur4 SINE Alu 53 138 -12 1 1309 180 111 0 0 chr3 94959261 94959288 -64640495 + (T)n Simple_repeat Simple_repeat 1 27 0 1 1309 24 0 0 29 chr3 94959290 94959306 -64640477 + AT_rich Low_complexity Low_complexity 1 16 0 1 1309 1468 68 5 10 chr3 94959306 94959499 -64640284 - B2_Mm1a SINE B2 0 193 2 1 1309 24 0 0 29 chr3 94959499 94959517 -64640266 + AT_rich Low_complexity Low_complexity 1 18 0 1 1309 1192 55 0 14 chr3 94959517 94959665 -64640118 - B1_Mm SINE Alu 0 147 2 1 1309 793 208 96 30 chr3 94959695 94959893 -64639890 - B3 SINE B2 -5 211 1 1 1309 405 0 0 0 chr3 94959920 94959965 -64639818 + (TC)n Simple_repeat Simple_repeat 1 45 0 1 1309 760 180 134 0 chr3 94959967 94960139 -64639644 - B2_Mm2 SINE B2 0 195 1 1 1309 255 309 0 36 chr3 94960484 94960568 -64639215 + ID2 SINE ID 3 83 0 1 1309 1233 61 0 0 chr3 94960738 94960886 -64638897 - B1_Mus1 SINE Alu 0 148 1 1 1309 572 209 43 50 chr3 94960940 94961081 -64638702 - B1_Mur2 SINE Alu -5 144 5 1 1309 643 226 207 0 chr3 94961085 94961249 -64638534 - B3 SINE B2 -17 199 2 1 1309 616 222 87 34 chr3 94961308 94961457 -64638326 - ID_B1 SINE B4 -65 159 3 1 1309 449 222 25 0 chr3 94961495 94961576 -64638207 + PB1D9 SINE Alu 1 83 -37 1 1309 349 137 0 0 chr3 94961644 94961695 -64638088 + B1_Mur4 SINE Alu 90 140 -10 1 1309 207 0 0 0 chr3 94961726 94961749 -64638034 + (TG)n Simple_repeat Simple_repeat 1 23 0 1 1309 396 0 0 0 chr3 94961749 94961792 -64637991 + (GA)n Simple_repeat Simple_repeat 1 44 0 1 1309 548 258 0 55 chr3 94961805 94961932 -64637851 - RSINE1 SINE B4 -43 122 3 1 1309 1454 66 16 0 chr3 94961946 94962128 -64637655 - B2_Mm2 SINE B2 -8 187 3 1 1309 1183 62 14 0 chr3 94962416 94962561 -64637222 + B1_Mus1 SINE Alu 2 148 0 1 1309 453 293 19 87 chr3 94962590 94962688 -64637095 - RSINE1 SINE B4 -4 161 70 1 1309 1444 71 38 0 chr3 94962688 94962871 -64636912 - B2_Mm2 SINE B2 -5 190 1 1 1309 453 293 19 87 chr3 94962871 94962933 -64636850 - RSINE1 SINE B4 -96 69 12 1 1309 180 0 0 0 chr3 94964872 94964892 -64634891 + (T)n Simple_repeat Simple_repeat 1 20 0 1 1309 642 273 0 7 chr3 94968655 94968795 -64630988 + B1F SINE Alu 1 139 -10 1 1309 480 301 61 70 chr3 94968843 94969057 -64630726 + MIR SINE MIR 51 262 0 1 1309 423 38 0 0 chr3 94969459 94969512 -64630271 + (TG)n Simple_repeat Simple_repeat 2 54 0 1 1309 2537 137 166 14 chr3 94969518 94970007 -64629776 - RMER15 LTR ERVL 0 575 13 1 1309 665 221 57 0 chr3 94969995 94970135 -64629648 - B3A SINE B2 -50 148 1 1 1309 363 301 130 61 chr3 94970394 94970525 -64629258 - RSINE1 SINE B4 -15 150 11 1 1309 1219 28 21 0 chr3 94970548 94970691 -64629092 - B1_Mm SINE Alu 0 147 2 1 1309 418 230 89 10 chr3 94970712 94970813 -64628970 - B1F1 SINE Alu -40 109 1 1 1309 23 0 0 0 chr3 94977451 94977474 -64622309 + GC_rich Low_complexity Low_complexity 1 23 0 1 1309 267 103 0 0 chr3 94978788 94978827 -64620956 + (T)n Simple_repeat Simple_repeat 1 39 0 1 1309 540 284 24 12 chr3 94979213 94979377 -64620406 + ID_B1 SINE B4 2 167 -57 1 1309 351 234 51 41 chr3 94979303 94979401 -64620382 + B1_Mur4 SINE Alu 12 110 -40 1 1309 236 164 43 43 chr3 94979535 94979605 -64620178 + B1_Mur1 SINE Alu 73 142 -7 1 1309 585 295 18 29 chr3 94979619 94979790 -64619993 - MER2 DNA MER2_type 0 345 177 1 1309 1126 78 0 0 chr3 94979790 94979932 -64619851 + B1_Mus1 SINE Alu 2 143 -5 1 1309 202 61 0 57 chr3 94979950 94979985 -64619798 + (CAAAAA)n Simple_repeat Simple_repeat 4 36 0 1 1309 217 217 28 156 chr3 94980021 94980069 -64619714 - PB1D10 SINE Alu 0 117 81 1 1309 1682 36 0 0 chr3 94980069 94980261 -64619522 - B2_Mm1a SINE B2 0 193 2 1 1309 217 217 28 156 chr3 94980261 94980321 -64619462 - PB1D10 SINE Alu -37 80 23 1 1309 811 131 16 0 chr3 94980702 94980824 -64618959 - B1_Mus2 SINE Alu -21 126 3 1 1309 386 248 18 82 chr3 94980726 94980836 -64618947 - MT2B LTR ERVL -344 257 155 1 1309 222 309 62 0 chr3 94980921 94981002 -64618781 + PB1D10 SINE Alu 7 92 -25 1 1309 419 226 69 0 chr3 94981248 94981350 -64618433 - PB1D10 SINE Alu 0 117 9 1 1309 280 234 47 0 chr3 94981748 94981812 -64617971 + ID4 SINE ID 9 75 -8 1 1309 380 155 70 0 chr3 94981811 94981882 -64617901 + ID_B1 SINE B4 138 213 -11 1 1309 873 79 14 14 chr3 94981884 94982025 -64617758 + (GAAAA)n Simple_repeat Simple_repeat 3 143 0 1 1309 665 123 18 0 chr3 94982036 94982150 -64617633 + (GAAA)n Simple_repeat Simple_repeat 4 119 0 1 1309 380 242 31 10 chr3 94982167 94982263 -64617520 + B1F1 SINE Alu 1 98 -51 1 1309 474 98 0 0 chr3 94982265 94982347 -64617436 + (GA)n Simple_repeat Simple_repeat 1 82 0 1 1309 1285 173 10 0 chr3 94982465 94982667 -64617116 - B3 SINE B2 -10 206 3 1 1309 1106 207 14 40 chr3 94982697 94982919 -64616864 - B3 SINE B2 0 216 1 1 1309 940 215 0 6 chr3 94983013 94983186 -64616597 - MTE2b LTR MaLR -207 172 1 1 1309 766 164 173 42 chr3 94983256 94983447 -64616336 + B3 SINE B2 1 216 0 1 1309 526 200 0 20 chr3 94983496 94983598 -64616185 - B3 SINE B2 -98 118 19 1 1309 305 260 81 30 chr3 94983603 94983702 -64616081 - PB1D10 SINE Alu -13 104 1 1 1309 579 262 160 5 chr3 94984388 94984576 -64615207 - ID_B1 SINE B4 -7 217 1 1 1309 709 215 89 0 chr3 94984616 94984774 -64615009 - B3A SINE B2 -24 174 3 1 1309 519 17 0 0 chr3 94985193 94985253 -64614530 + (TG)n Simple_repeat Simple_repeat 1 60 0 1 1309 699 188 98 0 chr3 94985409 94985542 -64614241 + B1_Mur4 SINE Alu 5 150 0 1 1309 248 250 16 0 chr3 94985732 94985796 -64613987 + (CATATA)n Simple_repeat Simple_repeat 2 66 0 1 1309 475 239 24 49 chr3 94986471 94986594 -64613189 + PB1D7 SINE Alu 1 120 0 1 1309 550 147 48 10 chr3 94986906 94987009 -64612774 - PB1D9 SINE Alu -13 107 1 1 1309 450 237 33 80 chr3 94987376 94987527 -64612256 + ID_B1 SINE B4 78 221 -3 1 1309 671 152 30 60 chr3 94987399 94987532 -64612251 + B1_Mur2 SINE Alu 21 149 0 1 1309 1266 47 0 0 chr3 94987742 94987890 -64611893 - B1_Mus1 SINE Alu 0 148 1 1 1309 516 280 0 0 chr3 94988139 94988246 -64611537 + PB1D7 SINE Alu 1 107 -13 1 1309 844 284 34 57 chr3 94988374 94988639 -64611144 - B4A SINE B4 -1 291 33 1 1309 459 271 12 136 chr3 94989807 94989969 -64609814 - ID_B1 SINE B4 -34 190 49 1 1309 236 278 115 44 chr3 94990020 94990133 -64609650 - B1F SINE Alu -26 123 3 1 1309 397 227 61 35 chr3 94990142 94990256 -64609527 - PB1D10 SINE Alu 0 117 1 1 1309 21 0 0 0 chr3 94990695 94990716 -64609067 + AT_rich Low_complexity Low_complexity 1 21 0 1 1309 292 243 40 67 chr3 94990946 94991021 -64608762 - ID2 SINE ID -6 77 5 1 1309 402 264 45 9 chr3 94991037 94991148 -64608635 - B1_Mus1 SINE Alu -25 123 9 1 1309 271 333 64 9 chr3 94991056 94991165 -64608618 - B4A SINE B4 -99 193 79 1 1309 486 200 66 9 chr3 94991174 94991280 -64608503 - PB1D7 SINE Alu -3 117 6 1 1309 265 239 45 0 chr3 94991223 94991290 -64608493 - B4 SINE B4 -142 150 81 1 1309 745 213 29 0 chr3 94991366 94991502 -64608281 - B1_Mm SINE Alu -7 140 1 1 1309 456 302 24 17 chr3 94991503 94991630 -64608153 - B1F SINE Alu -5 144 1 1 1309 587 300 25 6 chr3 94991633 94991813 -64607970 - B3A SINE B2 0 216 35 1 1309 808 179 7 7 chr3 94991850 94991985 -64607798 - B1_Mur1 SINE Alu -13 136 2 1 1309 447 208 139 0 chr3 94991989 94992090 -64607693 - PB1D7 SINE Alu -5 115 1 1 1309 305 239 43 59 chr3 94992090 94992116 -64607667 - MT2B2 LTR ERVL -389 195 153 1 1309 277 262 16 0 chr3 94993466 94993527 -64606256 + B1_Mus2 SINE Alu 29 90 -57 1 1309 414 289 38 69 chr3 94993864 94994024 -64605759 - MLT1B LTR MaLR -11 379 225 1 1309 494 263 0 0 chr3 94994068 94994182 -64605601 - B1F2 SINE Alu -6 143 30 1 1309 213 103 0 0 chr3 94994688 94994706 -64605077 + (A)n Simple_repeat Simple_repeat 1 18 0 1 1309 1171 75 7 0 chr3 94994706 94994852 -64604931 + B1_Mus2 SINE Alu 1 147 0 1 1309 213 103 0 0 chr3 94994852 94994872 -64604911 + (A)n Simple_repeat Simple_repeat 1 20 0 1 1309 536 207 43 8 chr3 94995059 94995184 -64604599 + B1F1 SINE Alu 9 150 0 1 1309 450 264 104 0 chr3 94995255 94995361 -64604422 + ID_B1 SINE B4 104 220 -4 1 1309 802 249 103 0 chr3 94995393 94995578 -64604205 - ID_B1 SINE B4 -12 212 9 1 1309 193 370 60 27 chr3 94996273 94996423 -64603360 - MIRm SINE MIR -48 160 6 1 1309 258 105 0 0 chr3 94996425 94996463 -64603320 + (TCCC)n Simple_repeat Simple_repeat 4 41 0 1 1309 930 66 0 0 chr3 94996470 94996591 -64603192 - B1_Mus2 SINE Alu 0 147 27 1 1309 687 168 29 89 chr3 94996575 94996865 -64602918 - RMER4A LTR ERVK -123 343 1 1 1309 772 223 42 42 chr3 94996902 94997117 -64602666 + B3 SINE B2 1 215 -1 1 1309 268 186 34 0 chr3 94997184 94997243 -64602540 + RMER4A LTR ERVK 18 78 -388 1 1309 555 275 105 87 chr3 94997256 94997626 -64602157 + RMER4A LTR ERVK 54 430 -36 1 1309 261 0 0 0 chr3 94997660 94997689 -64602094 + (A)n Simple_repeat Simple_repeat 1 29 0 1 1309 311 267 181 0 chr3 94997903 94998008 -64601775 - RSINE1 SINE B4 -40 125 2 1 1309 410 212 10 0 chr3 94998165 94998264 -64601519 + T-rich Low_complexity Low_complexity 1 100 0 1 1309 727 206 7 33 chr3 94998264 94998415 -64601368 - B1_Mur3 SINE Alu -1 148 2 1 1309 484 196 159 0 chr3 94998748 94998855 -64600928 + RSINE1 SINE B4 11 134 -31 1 1309 294 333 16 57 chr3 94999169 94999293 -64600490 + PB1D7 SINE Alu 1 119 -1 1 1309 504 291 16 0 chr3 94999324 94999451 -64600332 - ID_B1 SINE B4 0 224 96 1 1309 351 268 53 18 chr3 94999749 94999863 -64599920 + LTR41 LTR ERVL 1 118 -650 1 1309 376 231 133 44 chr3 94999887 95000000 -64599783 + ID_B1 SINE B4 2 124 -100 1 1309 419 222 56 0 chr3 95000002 95000092 -64599691 + ID_B1 SINE B4 129 223 -1 1 1309 855 108 31 0 chr3 95000353 95000482 -64599301 - B1_Mus1 SINE Alu 0 148 16 2 1309 481 190 29 20 chr3 95000470 95000572 -64599211 + B1_Mur2 SINE Alu 47 149 0 3 1309 241 212 248 66 chr3 95000631 95000646 -64599137 + ID_B1 SINE B4 81 223 -1 4 1309 406 208 57 47 chr3 95000646 95000752 -64599031 + PB1D9 SINE Alu 12 118 -2 5 1309 336 271 66 58 chr3 95000971 95001108 -64598675 + B1_Mus1 SINE Alu 11 148 0 6 1309 868 236 18 41 chr3 95001368 95001589 -64598194 - B3 SINE B2 0 216 1 7 1309 349 236 14 0 chr3 95001733 95001805 -64597978 - ID4 SINE ID -9 74 2 8 1309 274 361 113 0 chr3 95001845 95001942 -64597841 - PB1D10 SINE Alu -1 116 9 9 1309 529 203 6 128 chr3 95001979 95002143 -64597640 - B1_Mur1 SINE Alu 0 149 6 1 1309 319 273 58 39 chr3 95002318 95002421 -64597362 + PB1D10 SINE Alu 2 106 -11 1 1309 606 14 0 0 chr3 95002611 95002682 -64597101 + (CA)n Simple_repeat Simple_repeat 1 71 0 1 1309 343 146 0 0 chr3 95002771 95002826 -64596957 - B1_Mus1 SINE Alu -93 55 1 1 1309 561 332 47 14 chr3 95002985 95003199 -64596584 - ID_B1 SINE B4 -2 222 2 1 1309 415 259 0 0 chr3 95003237 95003322 -64596461 - B1_Mus2 SINE Alu -50 97 13 1 1309 250 256 52 136 chr3 95003299 95003311 -64596472 - MT2B2 LTR ERVL -292 292 242 1 1309 280 283 113 89 chr3 95003311 95003348 -64596435 - FAM SINE Alu -48 263 138 1 1309 423 235 0 12 chr3 95003348 95003434 -64596349 - ID_B1 SINE B4 -56 168 84 1 1309 250 256 52 136 chr3 95003435 95003453 -64596330 - MT2B2 LTR ERVL -292 241 152 1 1309 622 243 22 0 chr3 95003628 95003764 -64596019 + B1F SINE Alu 10 148 -1 1 1309 371 330 74 25 chr3 95005181 95005205 -64594578 + ID SINE ID 51 80 -144 2 1309 534 249 0 0 chr3 95005205 95005342 -64594441 + PB1D7 SINE Alu 3 139 -10 2 1309 333 0 0 0 chr3 95005352 95005389 -64594394 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 2 1309 606 257 7 0 chr3 95005411 95005547 -64594236 + B1_Mur3 SINE Alu 11 147 -2 2 1309 1417 79 16 0 chr3 95005743 95005932 -64593851 - B2_Mm1a SINE B2 0 193 2 2 1309 514 303 61 14 chr3 95006014 95006161 -64593622 - RSINE1 SINE B4 -8 157 4 2 1309 421 176 17 77 chr3 95006220 95006337 -64593446 - B1_Mus2 SINE Alu -6 114 1 2 1309 311 288 0 0 chr3 95006278 95006351 -64593432 - ID_B1 SINE B4 -84 140 68 2 1309 392 263 133 15 chr3 95006354 95006489 -64593294 - RSINE1 SINE B4 -13 152 2 2 1309 814 167 8 0 chr3 95006514 95006646 -64593137 - B1_Mus2 SINE Alu -1 146 14 2 1309 305 239 14 29 chr3 95006646 95006715 -64593068 - ID_B1 SINE B4 -73 151 84 3 1309 840 276 14 47 chr3 95006727 95006940 -64592843 - B4 SINE B4 -2 290 85 3 1309 22 0 0 0 chr3 95006944 95006966 -64592817 + AT_rich Low_complexity Low_complexity 1 22 0 3 1309 262 235 29 14 chr3 95007370 95007439 -64592344 + MT2B2 LTR ERVL 156 225 -359 3 1309 425 291 100 23 chr3 95007380 95007510 -64592273 + ID_B1 SINE B4 84 223 -1 3 1309 200 238 0 0 chr3 95008241 95008283 -64591500 + (TAAA)n Simple_repeat Simple_repeat 4 45 0 3 1309 1037 96 14 14 chr3 95008392 95008540 -64591243 - B1_Mus1 SINE Alu 0 148 1 3 1309 260 288 104 35 chr3 95008924 95009068 -64590715 + B3 SINE B2 63 216 0 3 1309 629 157 0 57 chr3 95009247 95009369 -64590414 + PB1D9 SINE Alu 5 119 -1 3 1309 1139 56 161 12 chr3 95009432 95009594 -64590189 + B2_Mm1a SINE B2 2 187 -6 3 1309 396 157 11 88 chr3 95009771 95009862 -64589921 - B1_Mur3 SINE Alu 0 149 66 4 1309 225 222 250 53 chr3 95009821 95009897 -64589886 - MT2B LTR ERVL -344 257 167 4 1309 829 215 7 0 chr3 95009995 95010139 -64589644 - B1_Mur2 SINE Alu -1 148 4 4 1309 23 0 0 0 chr3 95010140 95010163 -64589620 + AT_rich Low_complexity Low_complexity 1 23 0 4 1309 285 303 73 0 chr3 95010635 95010744 -64589039 - PB1D10 SINE Alu 0 117 1 4 1309 428 295 7 61 chr3 95010762 95010910 -64588873 - ID_B1 SINE B4 -2 222 83 4 1309 371 283 40 40 chr3 95011195 95011320 -64588463 + RSINE1 SINE B4 1 125 -40 4 1309 598 297 0 0 chr3 95011575 95011713 -64588070 - ID_B1 SINE B4 -3 221 84 4 1309 888 55 0 0 chr3 95011790 95011899 -64587884 - B1_Mus2 SINE Alu -37 110 2 4 1309 556 184 50 58 chr3 95011793 95011914 -64587869 - B4 SINE B4 -94 198 79 4 1309 372 248 48 36 chr3 95011914 95011960 -64587823 - ORR1B1-int LTR MaLR -755 754 586 5 1309 271 321 19 0 chr3 95012088 95012194 -64587589 + ID_B1 SINE B4 88 195 -29 5 1309 450 0 0 0 chr3 95012228 95012278 -64587505 + (TG)n Simple_repeat Simple_repeat 2 51 0 5 1309 416 236 132 0 chr3 95012283 95012389 -64587394 - RSINE1 SINE B4 -42 123 4 5 1309 302 203 26 39 chr3 95012389 95012453 -64587330 + RSINE1 SINE B4 50 112 -53 5 1309 380 292 9 19 chr3 95012498 95012606 -64587177 + PB1D10 SINE Alu 5 111 -6 5 1309 282 215 18 16 chr3 95012613 95012683 -64587100 + ID4 SINE ID 2 72 -11 5 1309 228 360 13 0 chr3 95012691 95012766 -64587017 + B1F SINE Alu 64 139 -10 5 1309 218 339 46 0 chr3 95012779 95012844 -64586939 + B3A SINE B2 7 74 -124 5 1309 275 246 40 68 chr3 95012787 95012861 -64586922 + ID SINE ID 15 86 -138 5 1309 327 253 30 28 chr3 95012861 95012891 -64586892 + ID4 SINE ID 15 113 -39 6 1309 521 154 264 0 chr3 95013081 95013191 -64586592 - B3 SINE B2 -77 139 1 6 1309 237 229 197 0 chr3 95013311 95013372 -64586411 + ID4_ SINE ID 11 83 0 6 1309 383 195 39 0 chr3 95013367 95013444 -64586339 + Charlie1a DNA MER1_type 958 1037 -418 6 1309 538 195 154 0 chr3 95014020 95014143 -64585640 - B1_Mm SINE Alu -5 142 1 6 1309 1260 40 0 13 chr3 95014264 95014414 -64585369 + B1_Mus1 SINE Alu 1 148 0 6 1309 850 247 52 0 chr3 95014549 95014743 -64585040 - B3 SINE B2 -12 204 1 6 1309 397 262 0 0 chr3 95015243 95015327 -64584456 - B1_Mur1 SINE Alu -15 134 51 6 1309 227 54 27 0 chr3 95015388 95015425 -64584358 + (CAAAA)n Simple_repeat Simple_repeat 2 39 0 6 1309 1216 87 23 6 chr3 95015435 95015609 -64584174 + B2_Mm2 SINE B2 3 179 -16 6 1309 715 274 53 24 chr3 95015626 95015835 -64583948 - ID_B1 SINE B4 -9 215 1 7 1309 1016 117 0 20 chr3 95015854 95016002 -64583781 + B1_Mus1 SINE Alu 3 147 -1 7 1309 316 265 20 111 chr3 95016053 95016081 -64583702 + ID_B1 SINE B4 77 215 -9 7 1309 700 192 16 0 chr3 95016081 95016206 -64583577 + B1_Mur3 SINE Alu 14 140 -9 7 1309 183 80 0 0 chr3 95016214 95016239 -64583544 + (TAAA)n Simple_repeat Simple_repeat 4 28 0 7 1309 682 205 79 7 chr3 95016331 95016483 -64583300 - RSINE1 SINE B4 0 165 3 7 1309 821 188 21 0 chr3 95016694 95016838 -64582945 - B1_Mur2 SINE Alu -2 147 1 7 1309 312 335 56 6 chr3 95017055 95017075 -64582708 - B3 SINE B2 0 216 197 7 1309 1607 26 21 0 chr3 95017075 95017264 -64582519 - B2_Mm1a SINE B2 0 193 1 7 1309 366 285 109 29 chr3 95017264 95017405 -64582378 - B3A SINE B2 -20 196 47 7 1309 276 218 2 6 chr3 95017557 95017619 -64582164 + B3A SINE B2 1 60 -135 7 1309 519 216 33 33 chr3 95017703 95017823 -64581960 - PB1D9 SINE Alu 0 120 1 8 1309 524 305 59 13 chr3 95017855 95018008 -64581775 + RSINE1 SINE B4 4 163 -2 8 1309 865 207 0 41 chr3 95018036 95018207 -64581576 + B2_Mm2 SINE B2 1 164 -31 8 1309 1219 61 0 20 chr3 95018473 95018624 -64581159 + B1_Mus1 SINE Alu 1 148 0 8 1309 306 0 0 0 chr3 95018624 95018658 -64581125 + (A)n Simple_repeat Simple_repeat 1 34 0 8 1309 343 297 36 9 chr3 95019351 95019463 -64580320 + PB1D10 SINE Alu 2 116 -1 8 1309 362 267 99 112 chr3 95019671 95019744 -64580039 + RSINE1 SINE B4 14 99 -66 8 1309 1286 20 0 7 chr3 95019744 95019892 -64579891 - B1_Mus2 SINE Alu 0 147 1 8 1309 362 267 99 112 chr3 95019892 95019970 -64579813 + RSINE1 SINE B4 100 163 -2 8 1309 447 235 108 42 chr3 95020106 95020226 -64579557 - RSINE1 SINE B4 0 165 38 8 1309 311 268 14 0 chr3 95020391 95020462 -64579321 - ID4_ SINE ID -10 73 2 8 1309 234 276 0 17 chr3 95020525 95020584 -64579199 - PB1D10 SINE Alu -30 87 30 9 1309 363 296 34 0 chr3 95020732 95020820 -64578963 + B1F1 SINE Alu 13 103 -46 9 1309 210 270 11 33 chr3 95021303 95021395 -64578388 + C-rich Low_complexity Low_complexity 5 94 0 9 1309 371 173 133 0 chr3 95022311 95022386 -64577397 + B3A SINE B2 48 132 -66 9 1309 245 154 0 0 chr3 95022533 95022572 -64577211 + B1_Mur4 SINE Alu 46 84 -66 9 1309 264 170 0 86 chr3 95022653 95022711 -64577072 - ID4 SINE ID -22 61 9 9 1309 1163 111 60 6 chr3 95022761 95022943 -64576840 + B2_Mm2 SINE B2 4 195 0 9 1309 203 194 0 0 chr3 95022953 95022989 -64576794 + A-rich Low_complexity Low_complexity 1 36 0 9 1309 266 317 0 19 chr3 95023315 95023418 -64576365 + U5 snRNA snRNA 1 101 -15 9 1309 251 73 49 0 chr3 95023910 95023951 -64575832 + (TAAA)n Simple_repeat Simple_repeat 4 46 0 9 1309 225 230 51 112 chr3 95024800 95024898 -64574885 - MT2B2 LTR ERVL -308 276 185 1 1309 382 252 106 10 chr3 95024811 95024915 -64574868 - PB1 SINE Alu -10 117 4 1 1309 402 303 75 44 chr3 95024915 95024990 -64574793 - ID SINE ID -140 84 5 1 1309 671 65 0 11 chr3 95025051 95025145 -64574638 + (TTTC)n Simple_repeat Simple_repeat 4 96 0 1 1309 1163 62 0 7 chr3 95025148 95025294 -64574489 - B1_Mus1 SINE Alu -1 147 3 1 1309 410 232 158 0 chr3 95025501 95025596 -64574187 + B1_Mus1 SINE Alu 2 111 -37 1 1309 732 183 0 0 chr3 95025864 95025979 -64573804 - PB1D9 SINE Alu -5 115 1 1 1309 1409 49 55 0 chr3 95025991 95026174 -64573609 - B2_Mm1t SINE B2 0 193 1 1 1309 280 297 42 75 chr3 95026570 95026690 -64573093 - PB1D10 SINE Alu 0 120 5 1 1309 475 256 16 16 chr3 95026695 95026818 -64572965 - B1F1 SINE Alu -26 123 1 1 1309 338 309 21 35 chr3 95026818 95026830 -64572953 - ID_B1 SINE B4 -16 171 70 1 1309 494 305 89 16 chr3 95026921 95027111 -64572672 - B4A SINE B4 -35 257 54 1 163 691 167 25 83 chr3 95027127 95027284 -64572499 - B1_Mur4 SINE Alu 0 150 3 1 1310 788 146 35 78 chr3 95027340 95027539 -64572244 - B2_Mm2 SINE B2 -13 182 10 1 1310 340 225 30 101 chr3 95027504 95027603 -64572180 - B1_Mur4 SINE Alu -58 92 1 1 1310 186 43 0 0 chr3 95027609 95027632 -64572151 + (T)n Simple_repeat Simple_repeat 1 23 0 1 1310 1338 109 0 16 chr3 95027652 95027839 -64571944 + B2_Mm1t SINE B2 2 185 -8 1 1310 616 275 83 11 chr3 95027840 95028020 -64571763 - B3A SINE B2 -4 194 2 1 1310 295 202 190 0 chr3 95028057 95028136 -64571647 + PB1D10 SINE Alu 24 117 0 1 1310 411 229 229 0 chr3 95028145 95028254 -64571529 - ID_B1 SINE B4 -8 216 83 1 1310 481 269 26 58 chr3 95028809 95028963 -64570820 - B1F SINE Alu 0 149 1 1 1310 821 165 45 0 chr3 95028993 95029126 -64570657 - B1_Mur2 SINE Alu -6 143 5 1 1310 1319 68 74 0 chr3 95029225 95029401 -64570382 + B2_Mm2 SINE B2 2 190 -5 1 1310 472 265 157 0 chr3 95029408 95029555 -64570228 + B3 SINE B2 1 170 -46 1 1310 400 212 99 162 chr3 95029674 95029865 -64569918 - B4 SINE B4 -113 179 1 1 1310 301 266 38 12 chr3 95029865 95029936 -64569847 - B1F1 SINE Alu -72 77 5 1 1310 333 250 16 136 chr3 95029935 95030060 -64569723 + MT2B LTR ERVL 150 259 -342 1 1310 553 211 25 50 chr3 95029950 95030070 -64569713 + PB1D9 SINE Alu 1 117 -3 1 1310 220 271 21 0 chr3 95030136 95030184 -64569599 - PB1D9 SINE Alu -71 49 1 1 1310 1328 60 5 46 chr3 95030200 95030394 -64569389 + B2_Mm2 SINE B2 3 188 -7 1 1310 399 271 37 9 chr3 95030450 95030558 -64569225 + PB1D10 SINE Alu 1 111 -6 1 1310 234 233 48 32 chr3 95030516 95030578 -64569205 + B4 SINE B4 178 240 -52 1 1310 296 207 68 68 chr3 95030668 95030690 -64569093 + B4A SINE B4 69 90 -202 1 1310 335 252 53 26 chr3 95030690 95030804 -64568979 + PB1D10 SINE Alu 1 117 0 1 1310 22 56 0 0 chr3 95032793 95032829 -64566954 + GC_rich Low_complexity Low_complexity 1 36 0 1 1310 228 35 0 0 chr3 95033863 95033892 -64565891 + (CACCC)n Simple_repeat Simple_repeat 3 31 0 1 1310 664 243 118 0 chr3 95036821 95036990 -64562793 + ID_B1 SINE B4 25 213 -11 1 1310 195 42 0 0 chr3 95037166 95037190 -64562593 + (TG)n Simple_repeat Simple_repeat 1 24 0 1 1310 419 299 15 7 chr3 95037678 95037813 -64561970 + ID_B1 SINE B4 86 221 -3 1 1310 465 188 52 0 chr3 95037861 95037957 -64561826 + PB1D9 SINE Alu 2 102 -18 1 1310 28 0 0 0 chr3 95038769 95038797 -64560986 + AT_rich Low_complexity Low_complexity 1 28 0 1 1310 522 235 153 66 chr3 95039112 95039308 -64560475 - MER20 DNA MER1_type -3 216 4 1 1310 433 261 81 0 chr3 95040513 95040624 -64559159 + B1_Mm SINE Alu 3 122 -25 1 1310 734 180 57 14 chr3 95040628 95040769 -64559014 - B1_Mus1 SINE Alu 0 148 2 1 1310 216 0 0 0 chr3 95040785 95040809 -64558974 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1 1310 21 36 0 0 chr3 95041037 95041065 -64558718 + AT_rich Low_complexity Low_complexity 1 28 0 1 1310 470 247 170 31 chr3 95041393 95041552 -64558231 - B3A SINE B2 -11 187 7 1 1310 333 306 109 31 chr3 95041577 95041705 -64558078 - ID_B1 SINE B4 -86 138 1 1 1310 972 176 0 0 chr3 95041872 95042020 -64557763 - B1_Mur1 SINE Alu -1 148 1 1 1310 291 215 90 30 chr3 95042140 95042207 -64557576 - ID4_ SINE ID -11 72 2 1 1310 1058 153 83 21 chr3 95042346 95042539 -64557244 + B3 SINE B2 2 206 -10 1 1310 1252 47 0 0 chr3 95042743 95042891 -64556892 + B1_Mus1 SINE Alu 1 148 0 1 1310 540 252 69 58 chr3 95042948 95043174 -64556609 + RSINE1 SINE B4 37 292 0 1 1310 610 176 176 0 chr3 95043184 95043309 -64556474 + B1_Mur4 SINE Alu 1 147 -3 1 1310 1263 34 0 0 chr3 95043325 95043472 -64556311 + B1_Mm SINE Alu 1 147 0 1 1310 223 283 38 0 chr3 95043525 95043578 -64556205 + PB1 SINE Alu 71 125 -2 1 1310 411 193 0 0 chr3 95046030 95046118 -64553665 + T-rich Low_complexity Low_complexity 1 88 0 1 1310 1232 47 0 13 chr3 95046119 95046269 -64553514 - B1_Mus1 SINE Alu 0 148 1 1 1310 420 20 0 0 chr3 95046336 95046385 -64553398 + (CA)n Simple_repeat Simple_repeat 1 49 0 1 1310 346 302 0 10 chr3 95047285 95047382 -64552401 + ID_B1 SINE B4 125 220 -4 1 1310 504 212 69 26 chr3 95047486 95047602 -64552181 + ID_B1 SINE B4 81 201 -23 1 1310 320 237 175 0 chr3 95047877 95047974 -64551809 + PB1D10 SINE Alu 3 116 -1 1 1310 206 45 91 0 chr3 95048596 95048640 -64551143 + (TTTTG)n Simple_repeat Simple_repeat 3 50 0 1 1310 1135 97 7 0 chr3 95048641 95048786 -64550997 - B1_Mus1 SINE Alu -1 147 2 1 1310 360 200 315 12 chr3 95049174 95049336 -64550447 - B3 SINE B2 -5 211 1 1 1310 415 248 53 60 chr3 95049384 95049517 -64550266 - RSINE1 SINE B4 -14 151 20 1 1310 423 240 39 0 chr3 95049847 95049951 -64549832 - PB1D10 SINE Alu -2 118 11 1 1310 643 231 70 74 chr3 95050105 95050130 -64549653 - B4A SINE B4 -47 245 224 1 1310 252 0 0 0 chr3 95050130 95050158 -64549625 + (TG)n Simple_repeat Simple_repeat 2 29 0 1 1310 706 223 65 61 chr3 95050158 95050375 -64549408 - B4 SINE B4 -69 223 4 1 1310 225 234 15 59 chr3 95050556 95050624 -64549159 - RSINE1 SINE B4 -14 151 87 1 1310 383 227 160 23 chr3 95050907 95051038 -64548745 - B1F SINE Alu 0 149 1 1 1310 454 242 10 10 chr3 95051068 95051164 -64548619 + PB1D10 SINE Alu 13 108 -9 1 1310 410 120 43 11 chr3 95051222 95051315 -64548468 + CT-rich Low_complexity Low_complexity 1 96 0 1 1310 199 79 26 26 chr3 95051326 95051365 -64548418 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 1 1310 1212 55 0 0 chr3 95051371 95051516 -64548267 - B1_Mus2 SINE Alu 0 147 3 1 1310 604 173 18 9 chr3 95051530 95051641 -64548142 - PB1D9 SINE Alu -7 113 2 1 1310 1016 205 44 5 chr3 95051658 95051864 -64547919 - B3 SINE B2 -1 215 2 1 1310 372 94 0 0 chr3 95051994 95052047 -64547736 + (TCCCC)n Simple_repeat Simple_repeat 4 56 0 1 1310 851 128 7 0 chr3 95052047 95052188 -64547595 + (TTTC)n Simple_repeat Simple_repeat 1 142 0 1 1310 1012 180 67 5 chr3 95052199 95052394 -64547389 - B3 SINE B2 -7 209 3 1 1310 510 236 31 16 chr3 95052806 95052935 -64546848 + ID_B1 SINE B4 92 222 -2 1 1310 482 201 29 192 chr3 95052974 95053060 -64546723 + B1F SINE Alu 2 65 -84 1 1310 952 218 40 25 chr3 95053060 95053262 -64546521 - B3 SINE B2 -10 206 2 1 1310 482 201 29 192 chr3 95053262 95053347 -64546436 + B1F SINE Alu 66 145 -4 1 1310 810 149 22 0 chr3 95053361 95053495 -64546288 + B1_Mur4 SINE Alu 13 149 -1 1 1310 22 0 0 0 chr3 95053540 95053562 -64546221 + AT_rich Low_complexity Low_complexity 1 22 0 1 1310 684 272 0 12 chr3 95053906 95054066 -64545717 - B3 SINE B2 -5 211 54 1 1310 276 30 0 0 chr3 95055241 95055274 -64544509 + (TG)n Simple_repeat Simple_repeat 1 33 0 1 1310 471 295 196 13 chr3 95055280 95055510 -64544273 - B4A SINE B4 -18 274 3 1 1310 238 302 46 108 chr3 95055763 95055893 -64543890 - B3A SINE B2 -72 126 5 1 1310 1001 206 35 0 chr3 95055922 95056121 -64543662 - B3 SINE B2 -9 207 2 1 1310 305 361 41 0 chr3 95056154 95056276 -64543507 - RSINE1 SINE B4 -35 130 4 1 1310 223 299 118 27 chr3 95056274 95056294 -64543489 + B4A SINE B4 68 97 -195 1 1310 485 169 45 6 chr3 95056294 95056404 -64543379 + PB1D10 SINE Alu 1 109 -8 1 1310 1157 89 0 7 chr3 95056423 95056570 -64543213 + B1_Mus2 SINE Alu 2 147 0 1 1310 183 26 49 49 chr3 95056577 95056618 -64543165 + (CAAA)n Simple_repeat Simple_repeat 2 42 0 1 1310 847 160 27 14 chr3 95056625 95056771 -64543012 + B1_Mur3 SINE Alu 2 149 0 1 1310 273 197 114 57 chr3 95056776 95056846 -64542937 + ID4 SINE ID 4 77 -6 1 1310 367 266 156 0 chr3 95056932 95057060 -64542723 + B1F SINE Alu 1 148 -1 1 1310 712 134 0 2 chr3 95057068 95057181 -64542602 - B1_Mur4 SINE Alu -9 111 1 1 1310 1208 35 7 7 chr3 95057213 95057358 -64542425 - B1_Mus1 SINE Alu -2 146 2 1 1310 499 212 102 71 chr3 95058383 95058510 -64541273 + ID_B1 SINE B4 94 224 0 2 1310 24 0 0 0 chr3 95058683 95058707 -64541076 + AT_rich Low_complexity Low_complexity 1 24 0 2 1310 388 223 27 28 chr3 95059438 95059552 -64540231 - PB1D9 SINE Alu -2 118 4 2 1310 218 347 40 24 chr3 95059453 95059577 -64540206 - ID_B1 SINE B4 -40 184 59 2 1310 234 91 0 0 chr3 95059651 95059684 -64540099 + (TTTTC)n Simple_repeat Simple_repeat 1 33 0 2 1310 524 299 35 7 chr3 95059684 95059829 -64539954 - B1F SINE Alu 0 149 1 2 1310 885 154 21 7 chr3 95060158 95060302 -64539481 - B1_Mus2 SINE Alu 0 147 2 2 1310 1167 95 0 0 chr3 95060373 95060520 -64539263 + B1_Mus2 SINE Alu 1 147 0 2 1310 220 274 115 10 chr3 95060868 95060964 -64538819 - MIRb SINE MIR -159 109 4 2 1310 252 233 123 0 chr3 95061353 95061426 -64538357 - ID4 SINE ID -1 82 1 2 1310 1269 35 0 0 chr3 95061449 95061594 -64538189 - B1_Mus2 SINE Alu -1 146 2 2 1310 499 261 9 9 chr3 95061602 95061718 -64538065 - PB1D9 SINE Alu -3 117 2 2 1310 187 351 76 8 chr3 95062249 95062381 -64537402 + MIRb SINE MIR 13 153 -115 2 1310 2695 148 26 32 chr3 95062389 95062857 -64536926 - RMER4A LTR ERVK -1 465 1 2 1310 229 369 28 28 chr3 95062937 95063043 -64536740 - L2 LINE L2 -616 2803 2698 2 1310 986 172 113 15 chr3 95063407 95063602 -64536181 + B3 SINE B2 3 216 0 2 1310 649 203 22 22 chr3 95063697 95063833 -64535950 + B1_Mur1 SINE Alu 3 138 -11 2 1310 307 152 71 57 chr3 95063941 95064011 -64535772 - ID4 SINE ID -11 72 2 2 1310 1199 48 14 0 chr3 95064431 95064578 -64535205 - B1_Mur4 SINE Alu 0 150 2 2 1310 186 171 0 0 chr3 95064600 95064641 -64535142 + T-rich Low_complexity Low_complexity 1 41 0 2 1310 1101 108 0 0 chr3 95064641 95064789 -64534994 - B1_Mus1 SINE Alu 0 148 1 2 1310 520 192 77 0 chr3 95064832 95064962 -64534821 - B1F SINE Alu -8 141 2 2 1310 2364 161 24 87 chr3 95064975 95065017 -64534766 + RMER4A LTR ERVK 1 46 -420 2 1310 1077 145 32 11 chr3 95065017 95065205 -64534578 + B2_Mm2 SINE B2 1 192 -3 2 1310 1358 98 11 0 chr3 95065209 95065393 -64534390 + B2_Mm1t SINE B2 1 186 -7 2 1310 2364 161 24 87 chr3 95065393 95065433 -64534350 + RMER4A LTR ERVK 47 62 -404 2 1310 1158 88 0 0 chr3 95065433 95065581 -64534202 + B1_Mus1 SINE Alu 1 148 0 2 1310 2364 161 24 87 chr3 95065581 95065989 -64533794 + RMER4A LTR ERVK 63 466 0 2 1310 1029 209 48 19 chr3 95066517 95066727 -64533056 + B3 SINE B2 1 216 0 2 1310 862 101 0 0 chr3 95066915 95067034 -64532749 - B1_Mus1 SINE Alu -28 120 2 2 1310 483 191 22 0 chr3 95069127 95069216 -64530567 + B1_Mur1 SINE Alu 48 138 -11 2 1310 217 290 32 16 chr3 95069685 95069748 -64530035 + MIR SINE MIR 87 150 -58 2 1310 1465 73 21 0 chr3 95069748 95069939 -64529844 + B2_Mm2 SINE B2 1 195 0 2 1310 995 186 0 29 chr3 95070144 95070316 -64529467 + B3 SINE B2 50 216 0 2 1310 963 150 0 20 chr3 95070322 95070472 -64529311 + B1_Mur3 SINE Alu 2 148 -1 2 1310 592 305 46 23 chr3 95070502 95070720 -64529063 + ID_B1 SINE B4 2 224 0 2 1310 1878 141 28 37 chr3 95070813 95071137 -64528646 + ORR1C1 LTR MaLR 1 321 -57 2 1310 500 189 62 40 chr3 95071145 95071276 -64528507 - PB1D9 SINE Alu 0 150 2 2 1310 414 71 0 0 chr3 95071277 95071333 -64528450 + ORR1C2 LTR MaLR 315 370 -14 2 1310 807 250 156 4 chr3 95071447 95071684 -64528099 - B4 SINE B4 -17 275 3 2 1310 588 241 196 28 chr3 95071720 95071899 -64527884 - B3 SINE B2 -7 209 1 2 1310 207 0 0 0 chr3 95071967 95071990 -64527793 + (TCTG)n Simple_repeat Simple_repeat 2 24 0 2 1310 273 254 44 6 chr3 95072066 95072151 -64527632 - MIRc SINE MIR -166 102 14 2 1310 344 250 72 56 chr3 95072863 95072973 -64526810 - PB1D9 SINE Alu -25 123 15 2 1310 350 295 154 73 chr3 95073005 95073265 -64526518 - B4 SINE B4 0 292 12 2 1310 1001 162 99 25 chr3 95073265 95073467 -64526316 + MTC LTR MaLR 2 218 -203 2 1310 298 147 107 107 chr3 95073454 95073538 -64526245 + RLTR17 LTR ERVK 609 692 0 2 1310 242 172 95 105 chr3 95073597 95073690 -64526093 - B1_Mur4 SINE Alu 0 120 16 2 1310 682 236 7 7 chr3 95073958 95074099 -64525684 + ID_B1 SINE B4 84 224 0 2 1310 525 333 23 6 chr3 95074156 95074328 -64525455 - ID_B1 SINE B4 -47 177 3 2 1310 23 0 0 0 chr3 95074339 95074362 -64525421 + AT_rich Low_complexity Low_complexity 1 23 0 2 1310 742 182 51 7 chr3 95074383 95074521 -64525262 + B1_Mur1 SINE Alu 6 149 0 2 1310 1556 33 5 11 chr3 95074525 95074711 -64525072 + B2_Mm1t SINE B2 2 186 -7 2 1310 441 277 0 11 chr3 95074763 95074858 -64524925 - RSINE1 SINE B4 -29 136 43 2 1310 516 294 87 6 chr3 95074889 95075050 -64524733 - MER20 DNA MER1_type 0 219 46 2 1310 592 14 0 0 chr3 95075354 95075426 -64524357 + L1_Mus2 LINE L1 6494 6565 -1 2 1310 761 201 95 30 chr3 95075435 95075635 -64524148 - B3 SINE B2 -2 214 2 2 1310 403 241 0 0 chr3 95075667 95075750 -64524033 - ID4 SINE ID 0 83 1 2 1310 659 236 20 27 chr3 95076046 95076194 -64523589 + B1F SINE Alu 2 148 -1 2 1310 245 316 0 0 chr3 95076364 95076421 -64523362 + ID SINE ID 2 58 -166 2 1310 1162 82 0 0 chr3 95076423 95076569 -64523214 + B1_Mm SINE Alu 2 147 0 2 1310 226 135 0 0 chr3 95076573 95076610 -64523173 + (A)n Simple_repeat Simple_repeat 1 37 0 2 1310 1158 194 24 0 chr3 95076623 95076829 -64522954 - B3 SINE B2 -3 213 3 2 1310 914 74 76 69 chr3 95076862 95077007 -64522776 - B1_Mus2 SINE Alu 0 147 2 2 1310 293 260 41 0 chr3 95077034 95077107 -64522676 - PB1D7 SINE Alu -43 77 2 2 1310 408 20 0 0 chr3 95077693 95077742 -64522041 + (TG)n Simple_repeat Simple_repeat 1 49 0 2 1310 483 272 86 23 chr3 95077861 95077989 -64521794 + RSINE1 SINE B4 1 136 -29 2 1310 326 211 0 135 chr3 95078088 95078192 -64521591 + B3A SINE B2 105 194 -4 2 1310 333 48 0 0 chr3 95078196 95078238 -64521545 - B1_Mur4 SINE Alu -6 144 103 2 1310 658 190 19 78 chr3 95078281 95078435 -64521348 + B1F SINE Alu 5 149 0 2 1310 735 132 14 0 chr3 95078475 95078604 -64521179 + B2_Mm1t SINE B2 9 149 -44 2 1310 1182 101 65 0 chr3 95078620 95078789 -64520994 + B2_Mm2 SINE B2 2 181 -14 2 1310 1288 41 0 0 chr3 95078795 95078942 -64520841 - B1_Mus2 SINE Alu 0 147 1 2 1310 446 238 95 0 chr3 95079395 95079500 -64520283 - PB1D9 SINE Alu 0 120 6 2 1310 566 271 33 0 chr3 95079509 95079631 -64520152 - B1F2 SINE Alu -23 126 1 2 1310 440 170 41 31 chr3 95079629 95079726 -64520057 - B1F2 SINE Alu -1 148 51 2 1310 242 255 156 21 chr3 95079656 95079752 -64520031 - MT2B LTR ERVL -323 278 170 2 1310 674 276 51 0 chr3 95079772 95079928 -64519855 + RSINE1 SINE B4 2 165 0 2 1310 279 310 55 49 chr3 95079782 95079945 -64519838 + B2_Mm2 SINE B2 13 176 -19 2 1310 798 256 31 68 chr3 95079962 95079999 -64519784 + B3 SINE B2 1 38 -178 2 1310 427 125 240 40 chr3 95079999 95080074 -64519709 + PB1D9 SINE Alu 1 86 -34 2 1310 387 0 0 0 chr3 95080074 95080117 -64519666 + (CA)n Simple_repeat Simple_repeat 2 44 0 2 1310 387 0 0 0 chr3 95080117 95080159 -64519624 + (GA)n Simple_repeat Simple_repeat 2 44 0 2 1310 427 125 240 40 chr3 95080159 95080182 -64519601 + PB1D9 SINE Alu 87 119 -1 2 1310 798 256 31 68 chr3 95080182 95080366 -64519417 + B3 SINE B2 39 214 -2 2 1310 478 162 259 28 chr3 95080825 95080933 -64518850 - B1_Mus1 SINE Alu -5 143 11 2 1310 712 269 137 14 chr3 95081255 95081474 -64518309 + 7SK RNA RNA 3 248 -83 2 1310 425 224 0 12 chr3 95081461 95081547 -64518236 - B1_Mur2 SINE Alu 0 149 65 2 1310 436 289 8 55 chr3 95081590 95081718 -64518065 + B3A SINE B2 62 183 -15 2 1310 673 24 12 0 chr3 95081795 95081879 -64517904 - B1_Mm SINE Alu 0 147 63 2 1310 1129 75 0 13 chr3 95081977 95082126 -64517657 + B1_Mus2 SINE Alu 1 147 0 2 1310 499 211 184 0 chr3 95082437 95082589 -64517194 + B3A SINE B2 1 180 -18 2 1310 654 81 0 0 chr3 95082596 95082682 -64517101 - B2_Mm2 SINE B2 -108 87 2 2 1310 22 35 0 0 chr3 95082694 95082723 -64517060 + AT_rich Low_complexity Low_complexity 1 29 0 2 1310 499 288 94 72 chr3 95082743 95082923 -64516860 - B3A SINE B2 -11 184 1 2 1310 339 25 0 0 chr3 95082932 95082972 -64516811 + (TG)n Simple_repeat Simple_repeat 1 40 0 2 1310 603 239 93 16 chr3 95083231 95083414 -64516369 + B3A SINE B2 2 198 0 2 1310 708 171 48 24 chr3 95083431 95083557 -64516226 + B1_Mur1 SINE Alu 21 149 0 2 1310 391 260 126 30 chr3 95083571 95083589 -64516194 + B1F SINE Alu 1 148 -1 2 1310 435 265 43 0 chr3 95083589 95083706 -64516077 + ID_B1 SINE B4 100 221 -3 2 1310 267 267 161 17 chr3 95083884 95084002 -64515781 - PB1D10 SINE Alu -13 136 2 2 1310 2839 52 41 0 chr3 95084083 95084451 -64515332 + L1Md_F2 LINE L1 6200 6582 0 2 1310 213 232 173 48 chr3 95084569 95084673 -64515110 - PB1D10 SINE Alu 0 117 1 2 1310 366 23 0 0 chr3 95084923 95084966 -64514817 + (TG)n Simple_repeat Simple_repeat 1 43 0 2 1310 324 290 21 21 chr3 95086010 95086105 -64513678 - PB1D10 SINE Alu -5 112 18 3 1310 234 321 68 43 chr3 95088492 95088520 -64511263 - ID_B1 SINE B4 -23 201 82 3 1310 282 224 101 45 chr3 95088520 95088609 -64511174 - PB1D7 SINE Alu -26 94 1 3 1310 265 224 17 0 chr3 95088676 95088734 -64511049 - B4 SINE B4 -146 146 88 3 1310 324 333 0 0 chr3 95088789 95088873 -64510910 - BC1_Mm scRNA scRNA -64 88 5 3 1310 293 269 14 29 chr3 95089087 95089156 -64510627 - ID4 SINE ID -14 69 2 3 1310 256 260 16 16 chr3 95089174 95089247 -64510536 - PB1 SINE Alu -54 73 1 3 1310 517 265 52 26 chr3 95089261 95089416 -64510367 - B3 SINE B2 -11 205 47 3 1310 363 299 59 17 chr3 95089734 95089853 -64509930 + RSINE1 SINE B4 4 127 -38 3 1310 440 178 15 139 chr3 95090300 95090333 -64509450 + MT2B LTR ERVL 138 153 -448 3 1310 881 27 0 18 chr3 95090333 95090446 -64509337 + B1_Mus2 SINE Alu 1 111 -36 3 1310 245 163 41 0 chr3 95090466 95090515 -64509268 + URR1B DNA MER1_type 175 225 0 3 1310 573 221 131 0 chr3 95090747 95090869 -64508914 + B1_Mur1 SINE Alu 2 139 -10 3 1310 387 249 141 38 chr3 95091346 95091530 -64508253 - B3 SINE B2 -5 211 9 3 1310 539 305 124 69 chr3 95092502 95092939 -64506844 - RLTR12B LTR ERVK -32 495 71 3 1310 1229 55 7 0 chr3 95093008 95093154 -64506629 - B1_Mm SINE Alu 0 147 1 3 1310 1477 65 5 0 chr3 95093249 95093434 -64506349 - B2_Mm1a SINE B2 -6 187 2 3 1310 1845 174 129 24 chr3 95094089 95094506 -64505277 - RMER6B LTR ERVK 0 461 1 3 1310 730 172 88 15 chr3 95094614 95094750 -64505033 - B1_Mur1 SINE Alu 0 149 4 3 1310 546 168 109 0 chr3 95094763 95094864 -64504919 - PB1D7 SINE Alu -8 112 1 3 1310 182 282 54 76 chr3 95095239 95095331 -64504452 + MIR3 SINE MIR 92 181 -27 3 1310 715 165 107 0 chr3 95095803 95095924 -64503859 + B1_Mur4 SINE Alu 11 144 -6 3 1310 583 308 14 0 chr3 95096772 95096918 -64502865 - ID_B1 SINE B4 0 224 77 3 1310 464 253 99 11 chr3 95096983 95097114 -64502669 - ID_B1 SINE B4 -16 208 73 3 1310 387 136 327 26 chr3 95097311 95097424 -64502359 - B1_Mur1 SINE Alu 0 149 3 3 1310 528 349 36 6 chr3 95097757 95097924 -64501859 - MLT1I LTR MaLR 0 411 240 3 1310 465 174 116 0 chr3 95098171 95098257 -64501526 - PB1D9 SINE Alu -23 97 2 3 1310 320 239 21 64 chr3 95098182 95098276 -64501507 - MT2B LTR ERVL -360 241 152 3 1310 251 302 32 65 chr3 95100506 95100630 -64499153 - RMER13A LTR ERVK -102 758 639 3 1310 279 0 0 0 chr3 95100882 95100913 -64498870 + (TC)n Simple_repeat Simple_repeat 1 31 0 3 1310 1197 50 0 0 chr3 95100994 95101133 -64498650 + B1_Mus1 SINE Alu 1 139 -9 3 1310 640 227 116 28 chr3 95101496 95101677 -64498106 - B3A SINE B2 0 198 2 3 1310 458 217 53 157 chr3 95101681 95101918 -64497865 - B1_Mur1 SINE Alu 0 149 2 3 1310 700 156 279 29 chr3 95102305 95102477 -64497306 - B3 SINE B2 -1 215 1 3 1310 792 153 16 24 chr3 95102526 95102653 -64497130 - B1_Mur4 SINE Alu -2 148 23 3 1310 309 26 0 0 chr3 95102664 95102702 -64497081 + (CA)n Simple_repeat Simple_repeat 2 39 0 3 1310 318 247 140 0 chr3 95102809 95102902 -64496881 - PB1D9 SINE Alu -4 116 11 3 1310 227 149 20 41 chr3 95102860 95102909 -64496874 - B4A SINE B4 -153 139 92 3 1310 1150 109 176 5 chr3 95102930 95103123 -64496660 + URR1A DNA MER1_type 1 226 0 3 1310 1255 41 0 7 chr3 95103249 95103397 -64496386 + B1_Mm SINE Alu 1 147 0 3 1310 2926 114 110 16 chr3 95103520 95104037 -64495746 + RMER4B LTR ERVK 16 581 -4 3 1310 718 89 107 0 chr3 95104654 95104766 -64495017 + B1_Mus1 SINE Alu 25 148 0 3 1310 488 16 16 0 chr3 95105640 95105701 -64494082 + (TATG)n Simple_repeat Simple_repeat 4 65 0 3 1310 210 178 178 0 chr3 95105768 95105813 -64493970 + PB1D10 SINE Alu 18 70 -47 3 1310 809 193 70 32 chr3 95107177 95107364 -64492419 + B3A SINE B2 4 197 -1 3 1310 1297 89 11 6 chr3 95107384 95107564 -64492219 + B2_Mm1t SINE B2 2 182 -11 3 1310 180 0 0 0 chr3 95107564 95107584 -64492199 + (TAAAA)n Simple_repeat Simple_repeat 2 21 0 3 1310 477 246 52 9 chr3 95107591 95107706 -64492077 + ID_B1 SINE B4 80 199 -25 3 1310 681 47 0 0 chr3 95107706 95107791 -64491992 + (GGAGA)n Simple_repeat Simple_repeat 4 88 0 3 1310 941 124 15 0 chr3 95107834 95107971 -64491812 + B1_Mus2 SINE Alu 9 147 0 3 1310 1592 31 5 20 chr3 95108093 95108289 -64491494 + B2_Mm1a SINE B2 1 193 0 3 1310 1066 31 16 0 chr3 95108310 95108439 -64491344 + B1_Mus1 SINE Alu 16 146 -2 3 1310 687 25 0 0 chr3 95108452 95108533 -64491250 + (GAAA)n Simple_repeat Simple_repeat 3 83 0 3 1310 1259 110 22 0 chr3 95108566 95108748 -64491035 + B2_Mm1t SINE B2 2 187 -6 3 1310 560 200 52 1 chr3 95108767 95108906 -64490877 + MIRb SINE MIR 34 186 -82 3 1310 547 225 78 19 chr3 95109044 95109198 -64490585 - RSINE1 SINE B4 0 165 3 3 1310 1069 173 0 0 chr3 95109256 95109429 -64490354 + B3 SINE B2 39 211 -5 3 1310 466 286 0 0 chr3 95109488 95109586 -64490197 + B1F SINE Alu 1 98 -51 3 1310 526 231 96 15 chr3 95109591 95109727 -64490056 + B1_Mur1 SINE Alu 2 148 -1 3 1310 368 175 229 19 chr3 95109960 95110065 -64489718 - RSINE1 SINE B4 -31 134 8 3 1310 274 270 26 26 chr3 95110136 95110212 -64489571 + ID4 SINE ID 1 76 -7 3 1310 261 0 0 0 chr3 95111564 95111593 -64488190 + (T)n Simple_repeat Simple_repeat 1 29 0 3 1310 216 0 0 0 chr3 95112228 95112252 -64487531 + (T)n Simple_repeat Simple_repeat 1 24 0 3 1310 1224 68 0 0 chr3 95112252 95112400 -64487383 - B1_Mus1 SINE Alu 0 148 1 3 1310 203 241 38 0 chr3 95112409 95112488 -64487295 + (TTA)n Simple_repeat Simple_repeat 1 82 0 3 1310 808 176 14 14 chr3 95112492 95112636 -64487147 - B1_Mus2 SINE Alu -2 145 2 3 1310 1229 48 7 0 chr3 95112652 95112798 -64486985 - B1_Mm SINE Alu 0 147 1 3 1310 511 264 39 8 chr3 95112967 95113097 -64486686 - B1F SINE Alu -15 134 1 3 1310 1571 67 0 5 chr3 95113165 95113361 -64486422 + B2_Mm2 SINE B2 1 195 0 3 1310 649 242 43 16 chr3 95113475 95113660 -64486123 + MER53 DNA hAT 1 190 -3 3 1310 191 320 146 0 chr3 95113704 95113807 -64485976 + MIR SINE MIR 31 148 -114 3 1310 819 210 51 78 chr3 95113814 95114031 -64485752 + B3 SINE B2 1 211 -5 3 1310 207 0 0 0 chr3 95114033 95114056 -64485727 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 3 1310 1459 43 0 37 chr3 95114101 95114292 -64485491 + B2_Mm1a SINE B2 1 184 -9 3 1310 1590 173 110 18 chr3 95114298 95114634 -64485149 - ORR1B2 LTR MaLR 0 367 1 3 1310 234 253 12 74 chr3 95114680 95114761 -64485022 + ID4_ SINE ID 2 77 -6 3 1310 1420 78 10 10 chr3 95115140 95115334 -64484449 + B2_Mm2 SINE B2 2 195 0 3 1310 197 263 0 50 chr3 95115433 95115493 -64484290 - L2 LINE L2 -3342 77 21 3 1310 858 155 7 27 chr3 95115965 95116111 -64483672 - B1_Mus1 SINE Alu -5 143 1 3 1310 452 174 266 0 chr3 95116404 95116513 -64483270 - B1_Mur2 SINE Alu 0 149 12 3 1310 284 269 154 0 chr3 95117011 95117115 -64482668 + PB1D7 SINE Alu 1 120 0 3 1310 344 87 5 0 chr3 95117115 95117171 -64482612 + B1_Mus2 SINE Alu 89 146 -1 3 1310 329 62 0 20 chr3 95117217 95117266 -64482517 + (GAAAA)n Simple_repeat Simple_repeat 3 50 0 3 1310 436 81 0 0 chr3 95117674 95117736 -64482047 + B3 SINE B2 1 62 -154 3 1310 881 194 64 15 chr3 95117744 95117948 -64481835 + B3 SINE B2 3 216 0 3 1310 1217 48 0 0 chr3 95118071 95118217 -64481566 - B1_Mus1 SINE Alu 0 148 3 3 1310 1055 134 30 0 chr3 95118382 95118546 -64481237 - B2_Mm2 SINE B2 -24 171 3 3 1310 24 0 0 0 chr3 95119044 95119068 -64480715 + GC_rich Low_complexity Low_complexity 1 24 0 3 1310 246 174 0 0 chr3 95119619 95119665 -64480118 + (CTG)n Simple_repeat Simple_repeat 3 48 0 3 1310 22 0 0 0 chr3 95120577 95120599 -64479184 + AT_rich Low_complexity Low_complexity 1 22 0 3 1310 1405 75 32 0 chr3 95120614 95120802 -64478981 - B2_Mm2 SINE B2 0 195 2 3 1310 1169 75 0 0 chr3 95120835 95120982 -64478801 - B1_Mm SINE Alu 0 147 1 3 1310 1195 68 0 0 chr3 95122265 95122411 -64477372 - B1_Mus1 SINE Alu 0 148 3 3 1310 317 175 35 81 chr3 95123064 95123151 -64476632 - B1_Mur3 SINE Alu 0 149 67 3 1310 291 337 0 53 chr3 95123322 95123416 -64476367 - PB1D10 SINE Alu -27 90 2 3 1310 437 149 198 36 chr3 95123424 95123535 -64476248 - B1_Mur2 SINE Alu -7 142 14 3 1310 33 0 0 0 chr3 95123564 95123597 -64476186 + AT_rich Low_complexity Low_complexity 1 33 0 3 1310 22 35 0 0 chr3 95127451 95127480 -64472303 + AT_rich Low_complexity Low_complexity 1 29 0 3 1310 306 219 73 37 chr3 95128839 95128931 -64470852 - B1F2 SINE Alu -52 95 1 3 1310 540 198 123 8 chr3 95128996 95129118 -64470665 + B1_Mur3 SINE Alu 1 136 -13 3 1310 300 283 91 0 chr3 95129144 95129243 -64470540 - PB1D7 SINE Alu -6 114 7 4 1310 1178 69 0 0 chr3 95129420 95129565 -64470218 - B1_Mus2 SINE Alu -2 145 1 4 1310 982 52 80 15 chr3 95130692 95130829 -64468954 + B1_Mus1 SINE Alu 3 148 0 4 1310 281 325 12 0 chr3 95132172 95132252 -64467531 - ID4_ SINE ID -1 82 2 4 1310 301 319 26 0 chr3 95132272 95132385 -64467398 - PB1D9 SINE Alu 0 120 5 4 1310 653 294 0 0 chr3 95132956 95133092 -64466691 + RSINE1 SINE B4 2 137 -28 4 1310 521 227 168 0 chr3 95133277 95133396 -64466387 - B1_Mus2 SINE Alu -1 146 8 4 1310 860 98 75 0 chr3 95133438 95133571 -64466212 + B1_Mus1 SINE Alu 6 148 0 4 1310 462 194 30 30 chr3 95133697 95133798 -64465985 + B1_Mus1 SINE Alu 40 140 -8 4 1310 371 186 371 0 chr3 95133850 95133947 -64465836 + B1_Mur4 SINE Alu 2 134 -16 4 1310 721 262 64 5 chr3 95134037 95134240 -64465543 + ID_B1 SINE B4 2 216 -8 4 1310 796 226 161 0 chr3 95134245 95134431 -64465352 + B3 SINE B2 1 216 0 4 1310 1413 58 17 0 chr3 95134728 95134902 -64464881 + B2_Mm2 SINE B2 3 179 -16 4 1310 22 0 0 0 chr3 95134932 95134954 -64464829 + AT_rich Low_complexity Low_complexity 1 22 0 4 1310 250 211 0 0 chr3 95134962 95135000 -64464783 + PB1D9 SINE Alu 1 38 -82 4 1310 243 0 0 0 chr3 95135611 95135638 -64464145 + (A)n Simple_repeat Simple_repeat 1 27 0 4 1310 234 325 0 12 chr3 95135842 95135923 -64463860 + B1_Mus1 SINE Alu 18 97 -51 4 1310 1337 80 32 0 chr3 95135958 95136145 -64463638 - B2_Mm2 SINE B2 -2 193 1 4 1310 1110 79 58 68 chr3 95136222 95136413 -64463370 - B2_Mm2 SINE B2 -6 189 1 4 1310 449 68 0 0 chr3 95136483 95136542 -64463241 + B2_Mm2 SINE B2 1 59 -136 4 1310 839 175 160 75 chr3 95136530 95136847 -64462936 - ORR1D1 LTR MaLR -30 354 3 4 1310 494 135 4 0 chr3 95136879 95136959 -64462824 - B1_Mur4 SINE Alu -17 103 22 4 1310 274 330 100 92 chr3 95137013 95137143 -64462640 - ID_B1 SINE B4 -90 134 4 4 1310 280 294 25 150 chr3 95137163 95137255 -64462528 - ID_B1 SINE B4 0 224 150 4 1310 1219 75 91 11 chr3 95137255 95137430 -64462353 - B2_Mm2 SINE B2 -3 192 4 4 1310 280 294 25 150 chr3 95137430 95137497 -64462286 - ID_B1 SINE B4 -75 149 85 4 1310 238 298 26 149 chr3 95137469 95137515 -64462268 - MT2B2 LTR ERVL -297 287 190 4 1310 350 330 0 54 chr3 95137515 95137608 -64462175 - PB1D10 SINE Alu -29 88 1 4 1310 238 298 26 149 chr3 95137608 95137623 -64462160 - MT2B2 LTR ERVL -297 189 153 4 1310 221 217 87 0 chr3 95137635 95137681 -64462102 + B1_Mus1 SINE Alu 1 50 -98 4 1310 272 299 154 19 chr3 95137742 95138001 -64461782 - HAL1 LINE L1 -473 2034 1741 4 1310 527 176 0 0 chr3 95138011 95138096 -64461687 - B3 SINE B2 -131 85 1 4 1310 507 301 7 40 chr3 95138104 95138253 -64461530 - B1_Mur2 SINE Alu -1 148 5 4 1310 399 272 220 0 chr3 95138313 95138481 -64461302 - ID_B1 SINE B4 -12 212 8 4 1310 1198 54 0 20 chr3 95138499 95138649 -64461134 - B1_Mus1 SINE Alu 0 148 2 4 1310 434 269 154 0 chr3 95138651 95138781 -64461002 - B1_Mur4 SINE Alu 0 150 1 4 1310 369 235 0 0 chr3 95138819 95138887 -64460896 - ID4 SINE ID -11 72 5 4 1310 311 228 72 48 chr3 95139200 95139283 -64460500 - B1_Mur2 SINE Alu -57 92 8 4 1310 833 184 14 0 chr3 95139507 95139648 -64460135 + B1_Mus2 SINE Alu 3 145 -2 4 1310 646 194 89 0 chr3 95139995 95140119 -64459664 - B1_Mus2 SINE Alu 0 147 13 4 1310 1164 62 85 0 chr3 95140120 95140297 -64459486 + B2_Mm1t SINE B2 2 193 0 4 1310 605 194 224 0 chr3 95140451 95140611 -64459172 - B3 SINE B2 -12 204 9 4 1310 316 209 0 43 chr3 95140618 95140688 -64459095 - PB1D10 SINE Alu 0 117 51 4 1310 867 9 0 27 chr3 95140761 95140871 -64458912 + B1_Mm SINE Alu 40 146 -1 4 1310 327 257 53 13 chr3 95140912 95140987 -64458796 - PB1D10 SINE Alu -6 111 34 4 1310 425 324 46 0 chr3 95141243 95141351 -64458432 + ID_B1 SINE B4 82 194 -30 4 1310 205 250 0 0 chr3 95141922 95141970 -64457813 + CT-rich Low_complexity Low_complexity 1 48 0 4 1310 334 295 36 79 chr3 95141971 95142111 -64457672 - B1F SINE Alu -15 134 1 4 1310 1415 73 10 16 chr3 95143059 95143253 -64456530 - B2_Mm2 SINE B2 -1 194 2 4 1310 309 240 91 30 chr3 95143270 95143369 -64456414 - PB1D10 SINE Alu -1 119 15 4 1310 864 188 0 0 chr3 95144340 95144484 -64455299 + B1_Mur4 SINE Alu 2 145 -5 4 1310 363 352 20 20 chr3 95144550 95144698 -64455085 + B4A SINE B4 32 179 -113 4 1310 406 262 41 34 chr3 95144893 95145039 -64454744 - B1_Mus1 SINE Alu -1 147 1 4 1310 252 283 0 0 chr3 95145480 95145533 -64454250 - RSINE1 SINE B4 -111 54 2 4 1310 426 198 105 0 chr3 95146100 95146186 -64453597 - B1_Mur4 SINE Alu -55 95 1 4 1310 1103 95 0 0 chr3 95146212 95146360 -64453423 - B1_Mus1 SINE Alu 0 148 1 4 1310 682 217 80 98 chr3 95146360 95146436 -64453347 - ID_B1 SINE B4 -1 222 3 4 1310 816 228 38 28 chr3 95146480 95146692 -64453091 - B3 SINE B2 0 216 3 4 1310 496 327 80 85 chr3 95146693 95146917 -64452866 + B4A SINE B4 58 280 -12 4 1310 476 278 14 74 chr3 95146902 95147107 -64452676 + ID_B1 SINE B4 32 224 0 4 1310 912 107 0 54 chr3 95146960 95147108 -64452675 + B1_Mus1 SINE Alu 9 148 0 4 1310 257 290 0 0 chr3 95147117 95147179 -64452604 + ID_B1 SINE B4 143 204 -20 4 1310 596 355 74 30 chr3 95147173 95147443 -64452340 + B4A SINE B4 7 288 -4 4 1310 5800 87 42 73 chr3 95147453 95148412 -64451371 - RLTR13B3 LTR ERVK 0 929 1 4 1310 423 308 82 67 chr3 95148590 95148785 -64450998 + B4A SINE B4 95 292 0 4 1310 183 100 0 0 chr3 95149126 95149156 -64450627 + (CA)n Simple_repeat Simple_repeat 1 30 0 4 1310 1203 55 0 20 chr3 95149655 95149804 -64449979 + B1_Mus2 SINE Alu 2 147 0 4 1310 692 165 50 0 chr3 95149871 95149992 -64449791 + B1_Mur1 SINE Alu 3 129 -20 4 1310 360 269 39 0 chr3 95149986 95150064 -64449719 + PB1D9 SINE Alu 13 93 -27 4 1310 768 247 65 38 chr3 95150076 95150261 -64449522 + B3 SINE B2 2 191 -25 4 1310 198 0 0 0 chr3 95150364 95150386 -64449397 + (CA)n Simple_repeat Simple_repeat 2 23 0 4 1310 962 257 24 5 chr3 95151124 95151335 -64448448 + ID_B1 SINE B4 8 222 -2 4 1310 1154 75 7 0 chr3 95151640 95151786 -64447997 + B1_Mus1 SINE Alu 1 147 -1 4 1310 1515 73 16 0 chr3 95152361 95152553 -64447230 - B2_Mm2 SINE B2 0 195 1 4 1310 742 190 35 38 chr3 95152563 95152746 -64447037 - B3 SINE B2 -9 184 4 4 1310 736 257 79 37 chr3 95152753 95152967 -64446816 - ID_B1 SINE B4 0 224 2 4 1310 624 296 58 87 chr3 95152989 95153196 -64446587 - B3 SINE B2 -13 203 3 4 1310 597 256 36 0 chr3 95153216 95153353 -64446430 - B1_Mur1 SINE Alu -7 142 1 4 1310 525 268 77 53 chr3 95153366 95153378 -64446405 - B3 SINE B2 -1 215 205 4 1310 836 209 0 0 chr3 95153378 95153526 -64446257 - B1_Mur2 SINE Alu -1 148 1 4 1310 570 254 74 27 chr3 95153526 95153722 -64446061 - B3A SINE B2 -12 204 2 4 1310 312 302 16 16 chr3 95153832 95153953 -64445830 + ID_B1 SINE B4 102 222 -2 4 1310 497 305 28 6 chr3 95154054 95154232 -64445551 + B3A SINE B2 1 182 -16 4 1310 562 88 316 9 chr3 95154236 95154350 -64445433 - B2_Mm2 SINE B2 0 195 47 4 1310 1334 111 6 0 chr3 95154443 95154623 -64445160 - B2_Mm1t SINE B2 -12 181 1 4 1310 27 29 0 0 chr3 95154631 95154665 -64445118 + AT_rich Low_complexity Low_complexity 1 34 0 4 1310 252 233 0 0 chr3 95154741 95154784 -64444999 + ID4_ SINE ID 38 80 -3 4 1310 1144 55 7 52 chr3 95154962 95155116 -64444667 + B1_Mus1 SINE Alu 2 148 0 4 1310 248 0 31 0 chr3 95155117 95155149 -64444634 + (CAAAAA)n Simple_repeat Simple_repeat 3 35 0 4 1310 231 204 0 0 chr3 95155237 95155286 -64444497 + (TA)n Simple_repeat Simple_repeat 2 50 0 4 1310 1204 54 0 7 chr3 95155295 95155444 -64444339 - B1_Mus1 SINE Alu 0 148 1 4 1310 323 253 65 60 chr3 95155475 95155649 -64444134 - L1MB7 LINE L1 -29 6155 5973 4 1310 1448 89 5 0 chr3 95155754 95155945 -64443838 + B2_Mm1a SINE B2 2 193 0 4 1310 743 210 14 14 chr3 95155950 95156095 -64443688 + Lx8 LINE L1 7122 7266 -207 4 1310 413 298 31 47 chr3 95156275 95156402 -64443381 + ID_B1 SINE B4 100 224 0 4 1310 332 267 0 13 chr3 95156464 95156540 -64443243 + ID_B1 SINE B4 143 217 -7 4 1310 924 149 7 39 chr3 95157073 95157227 -64442556 + B1_Mur4 SINE Alu 1 149 -1 4 1310 333 0 0 0 chr3 95157227 95157264 -64442519 + (CA)n Simple_repeat Simple_repeat 2 38 0 4 1310 768 114 129 0 chr3 95157314 95157446 -64442337 + B1_Mur4 SINE Alu 2 150 0 4 1310 257 348 43 0 chr3 95157468 95157560 -64442223 + B1F1 SINE Alu 49 144 -5 4 1310 410 365 67 0 chr3 95157635 95157813 -64441970 + B4A SINE B4 103 292 0 4 1310 1214 284 43 20 chr3 95157858 95158210 -64441573 + MTE2a LTR MaLR 20 379 0 4 1311 222 326 93 0 chr3 95158715 95158801 -64440982 + PB1D7 SINE Alu 15 108 -41 4 1311 639 158 34 26 chr3 95158879 95158996 -64440787 + B1_Mus2 SINE Alu 30 147 0 5 1311 195 42 0 0 chr3 95158996 95159020 -64440763 + (CAAAAA)n Simple_repeat Simple_repeat 1 24 0 5 1311 561 293 7 0 chr3 95159280 95159420 -64440363 + B1_Mur2 SINE Alu 2 142 -7 5 1311 440 284 7 29 chr3 95159427 95159568 -64440215 + PB1D9 SINE Alu 19 149 0 5 1311 23 33 0 0 chr3 95161400 95161430 -64438353 + AT_rich Low_complexity Low_complexity 1 30 0 5 1311 351 14 68 27 chr3 95161560 95161633 -64438150 + (TTTTG)n Simple_repeat Simple_repeat 1 76 0 5 1311 1182 74 0 0 chr3 95161633 95161781 -64438002 - B1_Mus1 SINE Alu 0 148 1 5 1311 340 271 145 16 chr3 95162024 95162148 -64437635 - B1_Mur1 SINE Alu -8 141 2 5 1311 410 337 33 44 chr3 95162183 95162366 -64437417 - B3A SINE B2 -16 182 2 5 1311 3877 186 31 57 chr3 95162706 95162932 -64436851 + MMVL30-int LTR ERV1 2877 3030 -668 5 1311 1053 101 0 0 chr3 95162932 95163071 -64436712 + B1_Mus1 SINE Alu 1 139 -9 5 1311 747 33 0 0 chr3 95163081 95163171 -64436612 + (GAA)n Simple_repeat Simple_repeat 1 90 0 5 1311 3877 151 25 57 chr3 95163171 95163751 -64436032 + MMVL30-int LTR ERV1 3032 3605 -93 5 1311 365 229 147 40 chr3 95163737 95163887 -64435896 + RLTR6-int LTR ERV1 7613 7778 0 5 1311 3223 43 10 5 chr3 95163916 95164310 -64435473 + MTA_Mm LTR MaLR 1 396 0 5 1311 263 308 52 65 chr3 95164714 95164867 -64434916 + LTRIS_Mus LTR ERV1 378 528 -59 5 1311 698 203 43 0 chr3 95164952 95165090 -64434693 - B1F2 SINE Alu 0 149 6 5 1311 299 303 39 58 chr3 95164997 95165210 -64434573 - MT2B LTR ERVL -328 256 40 5 1311 925 145 63 12 chr3 95165255 95165531 -64434252 + RMER10B LTR ERVL 1 398 0 5 1311 1440 58 0 30 chr3 95165548 95165745 -64434038 - B2_Mm2 SINE B2 -2 193 3 5 1311 186 43 0 0 chr3 95165886 95165909 -64433874 + (TGAA)n Simple_repeat Simple_repeat 3 25 0 5 1311 563 259 0 35 chr3 95165967 95166083 -64433700 + B1_Mur2 SINE Alu 1 112 -37 5 1311 379 315 52 37 chr3 95166087 95166222 -64433561 + B4A SINE B4 156 292 0 5 1311 234 128 0 0 chr3 95166238 95166277 -64433506 + (CA)n Simple_repeat Simple_repeat 2 40 0 5 1311 414 319 0 34 chr3 95166487 95166604 -64433179 + ID_B1 SINE B4 81 193 -31 5 1311 964 256 103 67 chr3 95166695 95167131 -64432652 + RLTR12B LTR ERVK 46 497 -31 5 1311 281 164 16 0 chr3 95167330 95167391 -64432392 - RMER4A LTR ERVK -1 465 404 5 1311 377 55 0 52 chr3 95167394 95167452 -64432331 + B1_Mus2 SINE Alu 90 144 -3 5 1311 233 29 29 0 chr3 95167452 95167486 -64432297 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 5 1311 4618 4 0 0 chr3 95167501 95167994 -64431789 + MT2_Mm LTR ERVL 1 493 0 5 1311 48889 16 0 0 chr3 95167994 95173366 -64426417 + MERVL-int LTR ERVL 1 5371 -114 5 1311 332 164 13 40 chr3 95173366 95173442 -64426341 + ORR1A3-int LTR MaLR 567 640 -1323 5 1311 321 0 0 0 chr3 95173442 95173480 -64426303 + MERVL-int LTR ERVL 5448 5485 0 5 1311 824 0 0 0 chr3 95173480 95173578 -64426205 + MT2_Mm LTR ERVL 1 98 -395 5 1311 559 26 13 0 chr3 95173601 95173677 -64426106 + MT2_Mm LTR ERVL 417 493 0 5 1311 1885 191 62 60 chr3 95173685 95173907 -64425876 - MYSERV16_I-int LTR ERVK -1460 866 663 5 1311 647 275 119 47 chr3 95173907 95174250 -64425533 - RLTR9A LTR ERVK 0 368 1 5 1311 1885 191 62 60 chr3 95174250 95174462 -64425321 - MYSERV16_I-int LTR ERVK -1664 662 431 5 1311 1675 26 5 0 chr3 95174464 95174655 -64425128 + B2_Mm1t SINE B2 2 193 0 5 1311 1296 105 15 20 chr3 95174669 95174864 -64424919 + B2_Mm2 SINE B2 1 194 -1 5 1311 1083 84 35 0 chr3 95174950 95175092 -64424691 - B1_Mus1 SINE Alu 0 148 2 5 1311 629 98 0 29 chr3 95175092 95175197 -64424586 - MYSERV16_I-int LTR ERVK -1912 414 313 5 1311 252 86 0 0 chr3 95175198 95175233 -64424550 + (TCC)n Simple_repeat Simple_repeat 3 37 0 5 1311 534 134 321 0 chr3 95175234 95175346 -64424437 - B1_Mus1 SINE Alu 0 148 1 5 1311 21 0 0 0 chr3 95175361 95175382 -64424401 + AT_rich Low_complexity Low_complexity 1 21 0 5 1311 536 174 10 0 chr3 95175382 95175480 -64424303 - MYSERV16_I-int LTR ERVK -5161 99 1 5 1311 2261 177 17 36 chr3 95175480 95175950 -64423833 - RMER4A LTR ERVK 0 466 6 5 1311 211 176 0 0 chr3 95176095 95176128 -64423655 + B4 SINE B4 47 79 -213 5 1311 431 233 10 0 chr3 95176128 95176231 -64423552 - MTD LTR MaLR 0 419 316 5 1311 248 242 76 61 chr3 95176231 95176363 -64423420 - RLTR41 LTR ERV1 0 446 313 5 1311 2527 161 10 55 chr3 95176371 95176412 -64423371 - MMVL30-int LTR ERV1 -356 3342 3312 5 1311 1442 74 21 0 chr3 95176412 95176601 -64423182 + B2_Mm1t SINE B2 1 193 0 5 1311 2527 161 10 55 chr3 95176601 95177047 -64422736 - MMVL30-int LTR ERV1 -387 3311 2877 5 1311 224 182 45 0 chr3 95177245 95177289 -64422494 + G-rich Low_complexity Low_complexity 3 48 0 5 1311 292 210 0 227 chr3 95177424 95177504 -64422279 - MMVL30-int LTR ERV1 -2736 962 895 5 1311 1086 66 0 0 chr3 95177504 95177640 -64422143 + B1_Mus1 SINE Alu 1 136 -12 5 1311 360 0 0 0 chr3 95177641 95177681 -64422102 + (CAAAA)n Simple_repeat Simple_repeat 2 41 0 5 1311 292 210 0 227 chr3 95177681 95177752 -64422031 - MMVL30-int LTR ERV1 -2804 894 844 5 1311 260 259 193 32 chr3 95178421 95178658 -64421125 - RLTR41 LTR ERV1 -80 452 240 5 1311 258 156 0 0 chr3 95178742 95178787 -64420996 + T-rich Low_complexity Low_complexity 1 45 0 5 1311 1250 216 103 0 chr3 95178977 95179259 -64420524 - MTD LTR MaLR -108 311 1 5 1311 354 309 32 39 chr3 95179290 95179445 -64420338 + B4 SINE B4 127 280 -12 5 1311 1835 146 80 18 chr3 95179493 95179861 -64419922 + ORR1B1 LTR MaLR 1 386 -8 5 1311 388 286 0 0 chr3 95179930 95180021 -64419762 + ID_B1 SINE B4 65 155 -69 5 1311 749 242 8 0 chr3 95180023 95180155 -64419628 + ETnERV2-int LTR ERVK 7070 7202 -204 5 1311 340 284 38 25 chr3 95180569 95180728 -64419055 + RMER16-int LTR ERVK 169 329 -6915 5 1311 1232 48 0 0 chr3 95180746 95180892 -64418891 + B1_Mus2 SINE Alu 2 147 0 5 1311 1927 189 165 43 chr3 95181077 95181586 -64418197 + RMER16-int LTR ERVK 251 821 -4585 5 1311 628 208 25 0 chr3 95181589 95181709 -64418074 + RMER16-int LTR ERVK 938 1060 -5077 5 1311 1017 261 86 23 chr3 95181722 95182024 -64417759 + ETnERV2-int LTR ERVK 2454 2774 -4632 5 1311 4890 167 130 137 chr3 95182039 95183222 -64416561 + RLTR45-int LTR ERVK 4296 5435 -1809 5 1311 255 130 35 53 chr3 95183222 95183279 -64416504 - Lx8 LINE L1 -376 7097 7042 5 1311 504 0 0 0 chr3 95183285 95183341 -64416442 + (GA)n Simple_repeat Simple_repeat 2 57 0 5 1311 4890 167 130 137 chr3 95183341 95183881 -64415902 + RLTR45-int LTR ERVK 5443 6070 -1174 5 1311 979 252 51 21 chr3 95183883 95184249 -64415534 + RLTR45-int LTR ERVK 7506 7848 -369 5 1311 4812 146 26 3 chr3 95184262 95184957 -64414826 + ETnERV2-int LTR ERVK 6492 7202 -204 5 1311 1216 49 0 0 chr3 95185204 95185348 -64414435 + B1_Mm SINE Alu 2 145 -2 5 1311 394 322 0 41 chr3 95185581 95185704 -64414079 + PB1D9 SINE Alu 1 118 -2 5 1311 844 80 72 0 chr3 95185751 95185876 -64413907 + B2_Mm2 SINE B2 2 135 -60 5 1311 424 307 7 7 chr3 95186020 95186161 -64413622 + B1F1 SINE Alu 9 149 0 5 1311 282 216 0 0 chr3 95186169 95186243 -64413540 + A-rich Low_complexity Low_complexity 1 74 0 5 1311 303 146 0 0 chr3 95186349 95186397 -64413386 - HAL1-3A_ME LINE L1 -835 2023 1976 5 1311 457 312 56 7 chr3 95186550 95186692 -64413091 + MTE2a LTR MaLR 79 227 -152 5 1311 180 0 0 0 chr3 95186694 95186714 -64413069 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 5 1311 649 204 39 26 chr3 95186755 95186911 -64412872 + MTE2a LTR MaLR 222 379 0 5 1311 730 210 56 61 chr3 95187043 95187241 -64412542 + B3 SINE B2 15 211 -5 5 1311 1040 97 36 0 chr3 95187251 95187416 -64412367 + B2_Mm1t SINE B2 9 179 -14 5 1311 357 146 14 0 chr3 95187458 95187523 -64412260 + B2_Mm2 SINE B2 46 116 -82 5 1311 25 31 0 0 chr3 95187536 95187568 -64412215 + AT_rich Low_complexity Low_complexity 1 32 0 5 1311 1094 95 0 13 chr3 95187582 95187731 -64412052 + B1_Mus1 SINE Alu 2 148 0 5 1311 186 71 0 0 chr3 95187753 95187781 -64412002 + (TTTTA)n Simple_repeat Simple_repeat 2 29 0 5 1311 269 281 0 0 chr3 95187781 95187845 -64411938 + RLTR4_MM-int LTR ERV1 3707 3770 -3831 5 1311 1385 81 27 0 chr3 95187848 95188033 -64411750 - B2_Mm1a SINE B2 -3 190 1 5 1311 698 162 36 22 chr3 95188070 95188209 -64411574 + B1_Mur2 SINE Alu 9 149 0 5 1311 706 256 48 11 chr3 95188231 95188417 -64411366 - B3A SINE B2 -2 196 4 5 1311 217 250 39 0 chr3 95188706 95188758 -64411025 + PB1D7 SINE Alu 22 75 -45 5 1311 324 271 12 0 chr3 95188973 95189058 -64410725 - Tigger7 DNA MER2_type -2103 388 303 5 1311 1343 70 32 21 chr3 95189207 95189366 -64410417 + B2_Mm1a SINE B2 1 160 -33 5 1311 207 0 0 0 chr3 95189366 95189389 -64410394 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 5 1311 1343 70 32 21 chr3 95189389 95189419 -64410364 + B2_Mm1a SINE B2 161 192 -1 5 1311 336 24 0 0 chr3 95189478 95189519 -64410264 + (CA)n Simple_repeat Simple_repeat 2 42 0 5 1311 254 239 56 14 chr3 95189844 95189916 -64409867 - B1F SINE Alu -44 105 31 5 1311 243 255 117 10 chr3 95190570 95190673 -64409110 + PB1 SINE Alu 9 122 -5 5 1311 743 180 21 14 chr3 95191079 95191220 -64408563 + B1_Mur1 SINE Alu 1 142 -7 5 1311 641 209 0 0 chr3 95191314 95191429 -64408354 - PB1D9 SINE Alu -5 115 1 5 1311 297 281 41 23 chr3 95191440 95191607 -64408176 - B3A SINE B2 -10 185 14 5 1311 233 226 200 21 chr3 95191754 95191849 -64407934 + Lx8 LINE L1 6359 6470 -1003 5 1311 628 258 15 88 chr3 95191858 95192062 -64407721 + B3 SINE B2 18 206 -10 5 1311 2282 267 114 37 chr3 95192071 95192942 -64406841 + Lx8 LINE L1 6534 7471 -2 5 1311 237 242 167 0 chr3 95193026 95193092 -64406691 + ID_B1 SINE B4 97 173 -51 5 1311 992 162 47 42 chr3 95193112 95193305 -64406478 + B2_Mm2 SINE B2 1 194 -1 5 1311 248 175 44 121 chr3 95193327 95193418 -64406365 + L1MB8 LINE L1 5861 5944 -234 5 1311 1109 52 0 7 chr3 95193535 95193670 -64406113 + B1_Mus2 SINE Alu 2 135 -12 5 1311 243 0 0 0 chr3 95193671 95193698 -64406085 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 5 1311 1054 71 35 0 chr3 95193702 95193843 -64405940 + B1_Mm SINE Alu 2 147 0 5 1311 242 173 0 13 chr3 95193843 95193919 -64405864 + A-rich Low_complexity Low_complexity 5 79 0 5 1311 349 249 143 99 chr3 95194720 95194943 -64404840 + B4A SINE B4 5 237 -55 5 1311 1770 169 64 8 chr3 95194986 95195343 -64404440 - MTD LTR MaLR -14 405 29 5 1311 253 292 60 40 chr3 95195426 95195449 -64404334 - L1M3 LINE L1 -502 5682 5654 5 1311 425 318 67 13 chr3 95195449 95195599 -64404184 - RSINE1 SINE B4 -4 161 4 5 1311 285 233 6 43 chr3 95195599 95195675 -64404108 - L1M3 LINE L1 -531 5653 5581 5 1311 4230 211 76 48 chr3 95195683 95196945 -64402838 + L1_Rod LINE L1 3727 5023 -824 6 1311 811 114 152 62 chr3 95197006 95197184 -64402599 + B2_Mm2 SINE B2 2 195 0 6 1311 259 216 0 0 chr3 95197240 95197291 -64402492 + ID_B1 SINE B4 174 224 0 6 1311 324 355 79 0 chr3 95197399 95197551 -64402232 + RSINE1 SINE B4 1 164 -1 6 1311 803 153 36 0 chr3 95197597 95197734 -64402049 - B1_Mur4 SINE Alu -2 148 7 6 1311 1099 122 64 0 chr3 95197741 95197913 -64401870 - B2_Mm2 SINE B2 -10 185 3 6 1311 1311 96 11 0 chr3 95197986 95198163 -64401620 + B2_Mm1t SINE B2 1 179 -14 6 1311 375 23 0 0 chr3 95198163 95198207 -64401576 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 6 1311 651 175 167 0 chr3 95198208 95198334 -64401449 + B1_Mur4 SINE Alu 3 149 -1 6 1311 297 228 0 0 chr3 95198935 95199014 -64400769 + T-rich Low_complexity Low_complexity 1 79 0 6 1311 1218 48 7 0 chr3 95199019 95199165 -64400618 + B1_Mm SINE Alu 1 147 0 6 1311 779 180 0 5 chr3 95199214 95199353 -64400430 - B1_Mur2 SINE Alu -16 133 1 6 1311 252 229 8 41 chr3 95199353 95199388 -64400395 - ORR1B1-int LTR MaLR -864 645 615 6 1311 219 36 0 0 chr3 95199393 95199421 -64400362 + (T)n Simple_repeat Simple_repeat 1 28 0 6 1311 27 0 0 0 chr3 95199928 95199955 -64399828 + AT_rich Low_complexity Low_complexity 1 27 0 6 1311 2838 16 3 0 chr3 95199955 95200276 -64399507 + RLTRETN_Mm LTR ERVK 1 322 0 6 1311 42228 28 0 6 chr3 95200276 95205147 -64394636 + MMETn-int LTR ERVK 1 4844 0 6 1311 2812 22 3 0 chr3 95205147 95205468 -64394315 + RLTRETN_Mm LTR ERVK 1 322 0 6 1311 189 0 0 0 chr3 95205468 95205489 -64394294 + (TAA)n Simple_repeat Simple_repeat 2 22 0 6 1311 621 229 133 6 chr3 95205545 95205725 -64394058 - B3 SINE B2 0 216 14 6 1311 509 204 0 61 chr3 95205999 95206114 -64393669 + B1_Mur4 SINE Alu 43 150 0 6 1311 860 113 15 15 chr3 95206123 95206258 -64393525 + B1_Mur4 SINE Alu 15 149 -1 6 1311 288 184 0 0 chr3 95206274 95206323 -64393460 - B3 SINE B2 -75 141 93 6 1311 678 212 38 0 chr3 95206343 95206475 -64393308 - B1_Mur4 SINE Alu -13 137 1 6 1311 536 200 87 8 chr3 95206475 95206601 -64393182 + B1_Mus2 SINE Alu 11 146 -1 6 1311 341 313 107 0 chr3 95207165 95207296 -64392487 - B1F SINE Alu -2 147 3 6 1311 198 0 0 0 chr3 95207316 95207338 -64392445 + (A)n Simple_repeat Simple_repeat 1 22 0 6 1311 328 213 168 30 chr3 95207355 95207486 -64392297 + B1F SINE Alu 1 149 0 6 1311 449 35 0 0 chr3 95207486 95207544 -64392239 + B1_Mm SINE Alu 81 138 -9 6 1311 1263 90 0 0 chr3 95207544 95207778 -64392005 + (GAAA)n Simple_repeat Simple_repeat 1 234 0 6 1311 245 273 99 20 chr3 95207790 95207891 -64391892 - RMER10A LTR ERVL -15 427 319 6 1311 335 338 35 7 chr3 95208237 95208380 -64391403 - B1F1 SINE Alu 0 149 3 6 1311 351 262 92 31 chr3 95208400 95208530 -64391253 + B1_Mur3 SINE Alu 5 142 -7 6 1311 31 0 0 0 chr3 95208535 95208566 -64391217 + AT_rich Low_complexity Low_complexity 1 31 0 6 1311 387 283 11 0 chr3 95208994 95209086 -64390697 - B1F1 SINE Alu -8 141 49 6 1311 1567 149 151 3 chr3 95209543 95209860 -64389923 + ORR1C2 LTR MaLR 21 384 0 6 1311 23 33 0 0 chr3 95210025 95210055 -64389728 + AT_rich Low_complexity Low_complexity 1 30 0 6 1311 246 178 0 0 chr3 95210058 95210103 -64389680 - PB1D9 SINE Alu -9 111 67 6 1311 637 237 0 0 chr3 95210096 95210227 -64389556 - B1_Mur1 SINE Alu -18 131 1 6 1311 23 68 0 0 chr3 95210227 95210271 -64389512 + AT_rich Low_complexity Low_complexity 1 44 0 6 1311 732 303 0 58 chr3 95210314 95210556 -64389227 - RodERV21-int LTR ERV1 -1896 3095 2868 6 1311 2085 67 27 3 chr3 95210608 95210909 -64388874 + IAPLTR2b LTR ERVK 1 308 -19 6 1311 359 304 40 52 chr3 95211067 95211443 -64388340 - MuLV-int LTR ERV1 -2657 4949 4890 6 1311 481 321 101 5 chr3 95211745 95211964 -64387819 - Charlie25 DNA MER1_type -475 2049 1810 6 1311 284 276 152 0 chr3 95211984 95212089 -64387694 - B3 SINE B2 -28 188 68 6 1311 872 179 0 0 chr3 95212172 95212312 -64387471 + B1_Mur3 SINE Alu 1 140 -9 6 1311 516 32 0 0 chr3 95212330 95212392 -64387391 + (GA)n Simple_repeat Simple_repeat 1 62 0 6 1311 252 264 32 21 chr3 95212437 95212530 -64387253 + MLT1B LTR MaLR 295 388 -2 6 1311 340 268 12 0 chr3 95212589 95212671 -64387112 + MER2 DNA MER2_type 214 296 -49 6 1311 1301 83 28 0 chr3 95212864 95213045 -64386738 + B2_Mm2 SINE B2 3 188 -7 6 1311 411 241 11 0 chr3 95213055 95213142 -64386641 + B3 SINE B2 2 89 -127 6 1311 316 164 59 15 chr3 95213140 95213208 -64386575 - ORR1D1 LTR MaLR -280 94 24 6 1311 318 229 0 0 chr3 95213230 95213300 -64386483 - B4A SINE B4 -220 72 3 6 1311 486 283 12 106 chr3 95213367 95213537 -64386246 - ID_B1 SINE B4 -68 156 3 6 1311 443 296 66 189 chr3 95213660 95213766 -64386017 - B4 SINE B4 0 292 215 6 1311 1251 41 0 0 chr3 95213766 95213913 -64385870 + B1_Mm SINE Alu 1 147 0 6 1311 443 296 66 189 chr3 95213913 95214139 -64385644 - B4 SINE B4 -78 214 1 6 1311 252 86 0 0 chr3 95214189 95214224 -64385559 + (T)n Simple_repeat Simple_repeat 1 35 0 6 1311 264 284 13 13 chr3 95215311 95215386 -64384397 + CT-rich Low_complexity Low_complexity 3 77 0 6 1311 232 367 16 8 chr3 95215434 95215447 -64384336 - B1_Mm SINE Alu -21 126 5 6 1311 403 352 0 0 chr3 95215447 95215555 -64384228 - ID_B1 SINE B4 -31 193 86 6 1311 661 256 25 12 chr3 95215606 95215768 -64384015 + B3 SINE B2 1 164 -52 6 1311 26 64 0 0 chr3 95216739 95216786 -64382997 + AT_rich Low_complexity Low_complexity 1 47 0 6 1311 320 234 0 25 chr3 95216797 95216876 -64382907 + B3A SINE B2 2 78 -120 6 1311 704 185 96 79 chr3 95216918 95217174 -64382609 - RMER12 LTR ERVK -32 1290 980 6 1311 593 153 45 0 chr3 95217180 95217291 -64382492 + RMER19B LTR ERVK 8 123 -779 6 1311 2228 115 35 5 chr3 95217320 95217695 -64382088 + RMER16 LTR ERVK 148 533 0 6 1311 2731 164 142 25 chr3 95217695 95218311 -64381472 + RMER19B LTR ERVK 120 808 -94 6 1311 1209 236 61 39 chr3 95218298 95218857 -64380926 - RMER12 LTR ERVK -607 797 39 6 1311 253 173 39 0 chr3 95219387 95219439 -64380344 - RMER12 LTR ERVK -1268 54 1 6 1311 442 292 42 35 chr3 95219439 95219581 -64380202 + B3 SINE B2 70 212 -4 6 1311 712 42 42 0 chr3 95219584 95219680 -64380103 + B1_Mus1 SINE Alu 39 138 -10 6 1311 3442 41 0 128 chr3 95219689 95220189 -64379594 + RLTR10C LTR ERVK 1 436 0 6 1311 213 94 0 0 chr3 95220198 95220230 -64379553 + (A)n Simple_repeat Simple_repeat 1 32 0 6 1311 2764 64 147 142 chr3 95220511 95221020 -64378763 + RLTR1B LTR ERV1 1 512 0 6 1311 2931 39 0 0 chr3 95221130 95221462 -64378321 + IAPEY3_LTR LTR ERVK 1 332 0 6 1311 45485 79 7 5 chr3 95221476 95227248 -64372535 + IAPEY3-int LTR ERVK 62 5850 -1830 6 1311 1287 34 0 0 chr3 95227245 95227394 -64372389 + IAPEY3-int LTR ERVK 5596 5744 -1936 6 1311 12295 51 34 1 chr3 95227397 95229162 -64370621 + IAPEY3-int LTR ERVK 5857 7680 0 6 1311 2944 36 0 0 chr3 95229162 95229494 -64370289 + IAPEY3_LTR LTR ERVK 1 332 0 6 1311 183 80 0 0 chr3 95229527 95229552 -64370231 + (GAAA)n Simple_repeat Simple_repeat 3 27 0 6 1311 455 169 0 0 chr3 95229592 95229669 -64370114 - B1_Mur2 SINE Alu -33 116 40 6 1311 252 200 0 0 chr3 95229714 95229774 -64370009 + (TA)n Simple_repeat Simple_repeat 2 61 0 6 1311 1045 103 0 14 chr3 95229879 95230026 -64369757 + B1_Mus2 SINE Alu 2 146 -1 6 1311 1778 138 141 102 chr3 95230173 95230326 -64369457 - RLTR9B2 LTR ERVK 0 420 276 6 1311 1178 68 0 0 chr3 95230326 95230473 -64369310 + B1_Mm SINE Alu 1 147 0 6 1311 1778 138 141 102 chr3 95230473 95230723 -64369060 - RLTR9B2 LTR ERVK -145 275 1 6 1311 198 0 0 0 chr3 95230762 95230784 -64368999 + (T)n Simple_repeat Simple_repeat 1 22 0 6 1311 1123 49 0 34 chr3 95230784 95230932 -64368851 - B1_Mm SINE Alu 0 147 5 6 1311 1911 173 24 125 chr3 95230993 95231489 -64368294 - RLTR41 LTR ERV1 0 446 1 6 1311 401 278 0 0 chr3 95233031 95233128 -64366655 - PB1D9 SINE Alu 0 120 24 6 1311 385 261 139 37 chr3 95233159 95233346 -64366437 - ID_B1 SINE B4 -18 206 1 6 1311 295 340 10 0 chr3 95233464 95233561 -64366222 - B1_Mur2 SINE Alu -50 99 2 6 1311 579 158 34 26 chr3 95233852 95233969 -64365814 - B1_Mus2 SINE Alu 0 147 30 6 1311 307 276 75 75 chr3 95233975 95234108 -64365675 - B1F SINE Alu 0 147 15 6 1311 769 280 42 26 chr3 95234613 95234877 -64364906 - MTE2a LTR MaLR 0 379 112 6 1311 256 357 86 37 chr3 95235052 95235124 -64364659 - B4 SINE B4 -119 173 88 6 1311 192 40 0 0 chr3 95235124 95235149 -64364634 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 6 1311 256 357 86 37 chr3 95235149 95235239 -64364544 - B4 SINE B4 -205 87 3 6 1311 4556 6 2 0 chr3 95235286 95235778 -64364005 - MT2_Mm LTR ERVL 0 493 1 6 1311 602 259 0 28 chr3 95235865 95236008 -64363775 - B1_Mur4 SINE Alu -1 149 11 6 1311 234 0 0 0 chr3 95236052 95236078 -64363705 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 6 1311 319 191 22 2 chr3 95236078 95236155 -64363628 + MTC LTR MaLR 18 97 -322 6 1311 242 271 0 17 chr3 95236145 95236205 -64363578 + B1_Mus2 SINE Alu 6 64 -83 6 1311 215 137 0 56 chr3 95236352 95236406 -64363377 + (CCAA)n Simple_repeat Simple_repeat 2 52 0 6 1311 215 274 216 45 chr3 95236459 95236547 -64363236 - RSINE1 SINE B4 -60 105 3 6 1311 451 279 98 0 chr3 95236757 95236879 -64362904 + ID_B1 SINE B4 90 223 -1 6 1311 823 190 0 26 chr3 95237007 95237158 -64362625 - B1_Mur2 SINE Alu 0 149 3 6 1311 311 91 293 81 chr3 95237175 95237298 -64362485 - B2_Mm2 SINE B2 0 195 47 6 1311 1244 107 23 0 chr3 95237363 95237540 -64362243 - B2_Mm2 SINE B2 -14 181 1 6 1311 270 0 0 0 chr3 95239503 95239533 -64360250 + (GA)n Simple_repeat Simple_repeat 2 31 0 6 1311 247 171 24 0 chr3 95239534 95239575 -64360208 - B1F1 SINE Alu -44 105 64 6 1311 657 268 10 40 chr3 95239599 95239801 -64359982 - B3A SINE B2 -2 196 1 7 1311 288 294 47 23 chr3 95240200 95240229 -64359554 - ID_B1 SINE B4 -1 223 92 7 1311 401 280 10 0 chr3 95240229 95240329 -64359454 - B1F2 SINE Alu -38 111 11 7 1311 227 299 0 112 chr3 95240256 95240354 -64359429 - MT2B LTR ERVL -362 239 153 7 1311 234 0 0 0 chr3 95240390 95240416 -64359367 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 7 1311 727 162 14 14 chr3 95240420 95240558 -64359225 - B1_Mus2 SINE Alu -1 146 9 7 1311 386 165 141 0 chr3 95240683 95240768 -64359015 + B1F2 SINE Alu 45 141 -8 7 1311 229 346 37 12 chr3 95241284 95241366 -64358417 - B4A SINE B4 -7 285 202 7 1311 532 324 24 24 chr3 95241376 95241626 -64358157 - B4A SINE B4 -41 251 2 7 1311 730 275 41 14 chr3 95241631 95241852 -64357931 - B4 SINE B4 -64 228 2 7 1311 223 132 26 0 chr3 95241865 95241903 -64357880 - B2_Mm2 SINE B2 -156 39 1 7 1311 487 232 40 0 chr3 95241962 95242087 -64357696 - ORR1D1 LTR MaLR -5 369 240 7 1311 552 149 0 10 chr3 95242095 95242197 -64357586 - ORR1D1 LTR MaLR -265 109 9 7 1311 696 244 71 0 chr3 95242210 95242378 -64357405 - B3A SINE B2 -18 180 1 7 1311 360 212 12 0 chr3 95242467 95242547 -64357236 - ID_B1 SINE B4 -1 223 143 7 1311 754 40 10 0 chr3 95242584 95242684 -64357099 - B1_Mus2 SINE Alu 0 147 47 7 1311 1163 72 18 18 chr3 95242683 95242853 -64356930 - B2_Mm2 SINE B2 -24 171 2 7 1311 390 246 174 15 chr3 95242853 95242985 -64356798 - ID_B1 SINE B4 -67 157 5 7 1311 622 246 72 20 chr3 95243128 95243323 -64356460 + B3 SINE B2 3 207 -9 7 1311 255 170 37 19 chr3 95243659 95243713 -64356070 + ID_B1 SINE B4 159 213 -11 7 1311 308 185 0 0 chr3 95243705 95243759 -64356024 - B1F SINE Alu -95 54 1 7 1311 228 203 0 78 chr3 95243883 95243947 -64355836 + PB1D9 SINE Alu 62 120 0 7 1311 28 0 0 0 chr3 95244075 95244103 -64355680 + AT_rich Low_complexity Low_complexity 1 28 0 7 1311 891 204 39 24 chr3 95244103 95244309 -64355474 - B3 SINE B2 -6 210 2 7 1311 743 166 14 20 chr3 95244378 95244526 -64355257 + B1_Mur3 SINE Alu 3 149 0 7 1311 507 272 98 10 chr3 95244588 95244781 -64355002 - ID_B1 SINE B4 -4 220 11 7 1311 280 190 86 0 chr3 95244770 95244828 -64354955 + B1F1 SINE Alu 82 144 -5 7 1311 239 223 264 28 chr3 95244999 95245105 -64354678 - ID_B1 SINE B4 -1 223 93 7 1311 663 211 31 0 chr3 95245307 95245435 -64354348 - B1_Mur2 SINE Alu -7 142 11 7 1311 344 275 83 0 chr3 95245461 95245570 -64354213 - B3A SINE B2 -7 191 74 7 1311 296 288 0 0 chr3 95245715 95245788 -64353995 + (TG)n Simple_repeat Simple_repeat 1 73 0 7 1311 458 269 20 40 chr3 95245863 95246064 -64353719 - L1MD LINE L1 -2371 3775 3579 7 1311 225 0 0 0 chr3 95246118 95246143 -64353640 + (TTA)n Simple_repeat Simple_repeat 2 26 0 7 1311 800 139 70 0 chr3 95246143 95246272 -64353511 - B1_Mur4 SINE Alu -12 138 1 7 1311 228 86 0 0 chr3 95246387 95246422 -64353361 + (TG)n Simple_repeat Simple_repeat 2 36 0 7 1311 321 243 114 19 chr3 95246434 95246539 -64353244 - B3 SINE B2 -67 149 35 7 1311 364 111 28 0 chr3 95246692 95246764 -64353019 + (TC)n Simple_repeat Simple_repeat 2 75 0 7 1311 444 240 85 46 chr3 95246887 95247040 -64352743 - B3A SINE B2 -2 196 38 7 1311 495 48 0 0 chr3 95247154 95247216 -64352567 + (TTCC)n Simple_repeat Simple_repeat 3 64 0 7 1311 1203 68 0 0 chr3 95247218 95247364 -64352419 - B1_Mus2 SINE Alu -1 146 1 7 1311 32 26 0 0 chr3 95247364 95247403 -64352380 + AT_rich Low_complexity Low_complexity 1 39 0 7 1311 354 93 23 0 chr3 95247405 95247465 -64352318 - B2_Mm2 SINE B2 -107 109 47 7 1311 962 70 28 0 chr3 95247478 95247621 -64352162 - B2_Mm2 SINE B2 -14 181 35 7 1311 1187 61 0 0 chr3 95247785 95247932 -64351851 - B1_Mus2 SINE Alu 0 147 1 7 1311 1808 172 46 36 chr3 95248549 95248960 -64350823 - MTC LTR MaLR 0 421 7 7 1311 318 47 91 30 chr3 95249009 95249033 -64350750 + polypyrimidine Low_complexity Low_complexity 49 74 0 7 1311 1623 37 5 0 chr3 95249033 95249224 -64350559 - B2_Mm1a SINE B2 0 193 2 7 1311 318 47 91 30 chr3 95249224 95249265 -64350518 + polypyrimidine Low_complexity Low_complexity 5 48 0 7 1311 268 260 0 27 chr3 95249306 95249381 -64350402 - ID4_ SINE ID -10 73 1 7 1311 445 211 151 33 chr3 95249442 95249594 -64350189 + B3 SINE B2 1 170 -46 7 1311 492 263 264 13 chr3 95250191 95250418 -64349365 - B4 SINE B4 -8 284 1 7 1311 180 0 0 0 chr3 95250495 95250515 -64349268 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 7 1311 870 254 72 128 chr3 95250653 95251078 -64348705 - L1MDa LINE L1 -4908 1725 1305 7 1311 283 309 130 0 chr3 95251078 95251201 -64348582 - B1F SINE Alu -10 139 1 7 1311 870 254 72 128 chr3 95251201 95251494 -64348289 - L1MDa LINE L1 -5329 1304 1047 7 1311 713 184 49 21 chr3 95251572 95251716 -64348067 - B1_Mus1 SINE Alu 0 148 1 7 1311 361 314 14 69 chr3 95251727 95251808 -64347975 - ID_B1 SINE B4 -8 216 142 7 1311 826 181 0 27 chr3 95251808 95251956 -64347827 - B1_Mus2 SINE Alu 0 147 4 7 1311 361 314 14 69 chr3 95251956 95252018 -64347765 - ID_B1 SINE B4 -83 141 81 7 1311 198 150 0 0 chr3 95252029 95252069 -64347714 + (TTCC)n Simple_repeat Simple_repeat 3 42 0 7 1311 431 279 39 0 chr3 95252081 95252210 -64347573 - RSINE1 SINE B4 -4 161 28 7 1311 24 77 0 0 chr3 95252578 95252630 -64347153 + AT_rich Low_complexity Low_complexity 1 52 0 7 1311 1156 92 116 0 chr3 95252649 95252822 -64346961 + B2_Mm2 SINE B2 2 194 -1 7 1311 3137 35 70 0 chr3 95253274 95253644 -64346139 - MTA_Mm LTR MaLR 0 396 1 7 1311 258 247 61 51 chr3 95253747 95253845 -64345938 + PB1D10 SINE Alu 19 117 0 7 1311 35 0 0 0 chr3 95253848 95253883 -64345900 + AT_rich Low_complexity Low_complexity 1 35 0 7 1311 804 141 157 143 chr3 95253944 95254043 -64345740 - URR1A DNA MER1_type 0 226 159 7 1311 1176 75 0 0 chr3 95254043 95254190 -64345593 - B1_Mm SINE Alu 0 147 1 7 1311 804 141 157 143 chr3 95254190 95254313 -64345470 - URR1A DNA MER1_type -68 158 1 7 1311 378 276 31 31 chr3 95254363 95254460 -64345323 + RSINE1 SINE B4 62 158 -7 7 1311 370 123 15 0 chr3 95254505 95254570 -64345213 + B2_Mm2 SINE B2 69 134 -61 7 1311 367 279 169 12 chr3 95254634 95254794 -64344989 + B3 SINE B2 27 211 -5 7 1311 268 293 103 23 chr3 95254861 95254999 -64344784 - PB1D10 SINE Alu 0 149 3 7 1311 465 265 45 0 chr3 95254999 95255131 -64344652 - B1F1 SINE Alu -9 140 3 7 1311 383 261 92 0 chr3 95255136 95255255 -64344528 + B1F2 SINE Alu 12 141 -8 7 1311 383 291 46 30 chr3 95255324 95255455 -64344328 - RSINE1 SINE B4 -31 134 2 7 1311 347 304 26 9 chr3 95255564 95255677 -64344106 - PB1D10 SINE Alu -1 116 2 7 1311 651 261 79 42 chr3 95255833 95256049 -64343734 - ID_B1 SINE B4 0 224 1 7 1311 439 254 78 21 chr3 95256163 95256304 -64343479 - B1F SINE Alu 0 149 1 7 1311 435 282 32 6 chr3 95256594 95256751 -64343032 + RSINE1 SINE B4 3 163 -2 7 1311 211 246 164 0 chr3 95256788 95256849 -64342934 + ID4_ SINE ID 4 74 -9 7 1311 334 303 110 55 chr3 95257040 95257295 -64342488 + B4A SINE B4 5 273 -19 7 1311 335 57 38 0 chr3 95257666 95257719 -64342064 + (TCTG)n Simple_repeat Simple_repeat 2 56 0 7 1311 262 287 0 0 chr3 95257723 95257810 -64341973 + CT-rich Low_complexity Low_complexity 1 87 0 7 1311 229 352 60 53 chr3 95257863 95258013 -64341770 - MLT1H2 LTR MaLR -305 184 34 7 1311 268 208 38 0 chr3 95258108 95258161 -64341622 - ID_B1 SINE B4 -14 210 156 7 1311 399 188 29 10 chr3 95258164 95258266 -64341517 + ORR1D1 LTR MaLR 3 106 -268 7 1311 793 206 74 6 chr3 95258289 95258465 -64341318 - MTD LTR MaLR -231 188 1 7 1311 807 186 103 44 chr3 95258570 95258699 -64341084 - B3 SINE B2 0 216 68 7 1311 2077 158 70 8 chr3 95258699 95259057 -64340726 - RLTR14 LTR ERV1 0 382 3 7 1311 807 186 103 44 chr3 95259057 95259130 -64340653 - B3 SINE B2 -149 67 2 7 1311 220 325 26 0 chr3 95259585 95259662 -64340121 - ID4 SINE ID -4 79 1 7 1311 288 272 32 11 chr3 95259786 95259879 -64339904 + L1M2 LINE L1 5192 5286 -857 7 1311 833 231 15 15 chr3 95259927 95260125 -64339658 + B3A SINE B2 1 198 0 7 1311 426 277 77 42 chr3 95260165 95260308 -64339475 + ID_B1 SINE B4 29 176 -48 7 1311 234 284 146 10 chr3 95260357 95260460 -64339323 + PB1D10 SINE Alu 1 117 0 7 1311 299 194 16 0 chr3 95260516 95260578 -64339205 + tRNA-Ala-GCY_ tRNA tRNA 5 67 -8 7 1311 468 243 56 169 chr3 95261111 95261289 -64338494 - RSINE1 SINE B4 0 165 8 7 1311 235 293 211 0 chr3 95261300 95261423 -64338360 - B1F SINE Alu 0 149 1 7 1311 426 198 21 10 chr3 95261433 95261530 -64338253 - PB1D9 SINE Alu 0 120 23 7 1311 235 319 11 32 chr3 95261470 95261564 -64338219 - B4 SINE B4 -124 168 77 7 1311 405 201 57 30 chr3 95262120 95262289 -64337494 + L1M2 LINE L1 5318 5487 -684 7 1311 355 229 52 0 chr3 95262392 95262488 -64337295 + L1M2 LINE L1 5483 5583 -606 7 1311 689 230 197 0 chr3 95262595 95262773 -64337010 - B3 SINE B2 -3 213 1 7 1311 360 265 84 0 chr3 95262790 95262873 -64336910 + B1F1 SINE Alu 1 90 -59 7 1311 252 322 11 11 chr3 95263024 95263118 -64336665 - B1F2 SINE Alu -41 108 15 7 1311 429 279 166 4 chr3 95263323 95263571 -64336212 - Lx8 LINE L1 -221 7252 6964 7 1311 347 287 18 36 chr3 95263607 95263719 -64336064 - PB1 SINE Alu -17 110 1 7 1311 221 0 0 33 chr3 95263827 95263857 -64335926 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 7 1311 386 213 197 0 chr3 95263888 95264010 -64335773 + B1F2 SINE Alu 1 146 -3 8 1311 462 280 208 0 chr3 95264858 95265026 -64334757 + B3 SINE B2 1 203 -13 8 1311 309 51 0 0 chr3 95265026 95265065 -64334718 + (CATA)n Simple_repeat Simple_repeat 1 39 0 8 1311 471 35 0 0 chr3 95265599 95265656 -64334127 + (CA)n Simple_repeat Simple_repeat 2 58 0 8 1311 22 0 0 0 chr3 95265710 95265732 -64334051 + AT_rich Low_complexity Low_complexity 1 22 0 8 1311 250 341 141 98 chr3 95265749 95265938 -64333845 + B4 SINE B4 3 201 -91 8 1311 1234 87 59 16 chr3 95265938 95266124 -64333659 + B2_Mm2 SINE B2 2 195 0 8 1311 250 341 141 98 chr3 95266124 95266210 -64333573 + B4 SINE B4 202 290 -2 8 1311 462 267 122 0 chr3 95266508 95266639 -64333144 - RSINE1 SINE B4 -3 162 16 8 1311 191 36 36 0 chr3 95266808 95266836 -64332947 + (TAGG)n Simple_repeat Simple_repeat 2 30 0 8 1311 587 191 17 9 chr3 95267152 95267268 -64332515 + B3 SINE B2 1 117 -99 8 1311 435 38 0 0 chr3 95267294 95267347 -64332436 + (CATA)n Simple_repeat Simple_repeat 1 53 0 8 1311 778 104 101 36 chr3 95267412 95267551 -64332232 + B1_Mus1 SINE Alu 1 148 0 8 1311 623 107 301 26 chr3 95268302 95268455 -64331328 + URR1A DNA MER1_type 32 226 0 8 1311 493 335 84 0 chr3 95268545 95268700 -64331083 - B3A SINE B2 -24 174 7 8 1311 558 322 22 6 chr3 95268842 95269023 -64330760 - B4 SINE B4 -2 290 107 8 1311 24 53 0 0 chr3 95269038 95269076 -64330707 + AT_rich Low_complexity Low_complexity 1 38 0 8 1311 279 267 0 0 chr3 95269096 95269156 -64330627 - AluG_3 SINE Alu -95 216 157 8 1311 519 289 56 51 chr3 95269224 95269439 -64330344 - B3 SINE B2 0 216 1 8 1311 881 74 8 0 chr3 95269570 95269692 -64330091 - B1_Mus2 SINE Alu -23 124 2 8 1311 241 261 231 51 chr3 95269741 95269858 -64329925 - B1_Mur2 SINE Alu -10 139 2 8 1311 294 252 226 0 chr3 95270075 95270190 -64329593 + RSINE1 SINE B4 14 154 -11 8 1311 299 202 52 52 chr3 95270559 95270674 -64329109 + CT-rich Low_complexity Low_complexity 3 117 0 8 1311 509 216 172 0 chr3 95270933 95271049 -64328734 + B1_Mur3 SINE Alu 1 136 -13 8 1311 625 315 56 53 chr3 95271396 95271681 -64328102 + B4 SINE B4 3 288 -4 8 1311 228 284 125 19 chr3 95271854 95271958 -64327825 - PB1D10 SINE Alu 0 117 3 8 1311 553 200 35 0 chr3 95272820 95272935 -64326848 - PB1D9 SINE Alu 0 120 2 8 1311 462 18 0 0 chr3 95272940 95272995 -64326788 + (TC)n Simple_repeat Simple_repeat 1 55 0 8 1311 297 0 0 0 chr3 95272995 95273027 -64326756 + (CA)n Simple_repeat Simple_repeat 1 33 0 8 1311 299 227 0 39 chr3 95273104 95273182 -64326601 - BC1_Mm scRNA scRNA -72 80 6 8 1311 486 181 31 87 chr3 95273233 95273360 -64326423 - PB1 SINE Alu -6 121 2 8 1311 406 242 119 16 chr3 95273372 95273498 -64326285 - B1F SINE Alu -9 140 2 8 1311 663 144 71 16 chr3 95273690 95273817 -64325966 - B1_Mur4 SINE Alu -11 139 6 8 1311 311 155 35 0 chr3 95274396 95274454 -64325329 - ID_B1 SINE B4 -4 220 161 8 1311 555 211 9 9 chr3 95275127 95275242 -64324541 + PB1D9 SINE Alu 5 119 -1 8 1311 285 308 147 82 chr3 95275258 95275428 -64324355 + ID_B1 SINE B4 35 215 -9 8 1311 1073 190 79 34 chr3 95277660 95278042 -64321741 - RLTR20A LTR ERVK 0 541 5 8 1311 207 0 0 0 chr3 95278757 95278780 -64321003 + (A)n Simple_repeat Simple_repeat 1 23 0 8 1311 1280 109 5 49 chr3 95279164 95279367 -64320416 + B2_Mm2 SINE B2 2 195 0 8 1311 234 0 0 0 chr3 95279404 95279430 -64320353 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 8 1311 21 0 0 0 chr3 95279496 95279517 -64320266 + AT_rich Low_complexity Low_complexity 1 21 0 8 1311 299 322 47 40 chr3 95279623 95279772 -64320011 + RSINE1 SINE B4 4 153 -12 8 1311 1127 144 54 10 chr3 95280389 95280593 -64319190 + B3 SINE B2 1 213 -3 8 1311 869 249 44 10 chr3 95280616 95280819 -64318964 + B3 SINE B2 7 216 0 8 1311 298 272 37 12 chr3 95280847 95280929 -64318854 + B4A SINE B4 1 84 -208 8 1311 376 220 0 181 chr3 95280954 95281018 -64318765 + B4 SINE B4 169 218 -74 8 1311 972 212 46 10 chr3 95281018 95281213 -64318570 + B3 SINE B2 1 202 -14 8 1311 376 220 0 181 chr3 95281213 95281281 -64318502 + B4 SINE B4 219 277 -15 8 1311 493 258 60 54 chr3 95281333 95281501 -64318282 + B3A SINE B2 3 171 -27 8 1311 620 189 293 0 chr3 95281561 95281725 -64318058 + B3 SINE B2 4 215 -1 8 1311 235 282 84 0 chr3 95281731 95281802 -64317981 + PB1D9 SINE Alu 1 77 -43 8 1311 212 261 87 0 chr3 95281870 95281939 -64317844 - PB1D10 SINE Alu -23 94 20 8 1311 305 295 80 13 chr3 95281977 95282128 -64317655 - RSINE1 SINE B4 0 165 5 8 1311 189 0 0 0 chr3 95282134 95282155 -64317628 + (A)n Simple_repeat Simple_repeat 1 21 0 8 1311 364 325 8 38 chr3 95282231 95282362 -64317421 - PB1 SINE Alu 0 127 1 8 1311 547 193 18 9 chr3 95282371 95282481 -64317302 - B1_Mur2 SINE Alu -3 146 36 8 1311 440 230 70 0 chr3 95282644 95282744 -64317039 + B1F SINE Alu 41 147 -2 8 1311 272 274 0 0 chr3 95282742 95282804 -64316979 + B4A SINE B4 85 146 -146 8 1311 585 204 0 0 chr3 95282752 95282860 -64316923 + PB1D10 SINE Alu 10 117 0 8 1311 351 313 40 62 chr3 95282999 95283176 -64316607 + MER58A DNA MER1_type 52 224 0 8 1311 257 256 18 29 chr3 95283256 95283358 -64316425 + B1F1 SINE Alu 18 119 -8 8 1311 489 58 0 0 chr3 95283671 95283740 -64316043 + (CAGA)n Simple_repeat Simple_repeat 2 70 0 8 1311 677 283 45 36 chr3 95283748 95283968 -64315815 + ID_B1 SINE B4 2 223 -1 8 1311 766 142 126 0 chr3 95284331 95284458 -64315325 - B1_Mus2 SINE Alu -1 146 4 8 1311 309 51 0 0 chr3 95284576 95284615 -64315168 + (TAAA)n Simple_repeat Simple_repeat 3 41 0 8 1311 459 161 150 24 chr3 95285008 95285135 -64314648 - B1_Mus1 SINE Alu -1 147 5 8 1311 207 0 0 0 chr3 95285139 95285162 -64314621 + (T)n Simple_repeat Simple_repeat 1 23 0 8 1311 788 254 44 15 chr3 95285175 95285379 -64314404 + B3 SINE B2 1 210 -6 8 1311 477 205 219 8 chr3 95285733 95285856 -64313927 - B1_Mur2 SINE Alu 0 149 1 8 1311 1098 172 24 19 chr3 95286273 95286481 -64313302 - B3 SINE B2 -7 209 1 8 1311 3183 36 26 3 chr3 95286526 95286912 -64312871 - MTA_Mm LTR MaLR 0 396 2 8 1311 201 345 128 0 chr3 95286938 95287086 -64312697 + MIR SINE MIR 65 231 -31 8 1311 288 53 0 0 chr3 95287515 95287553 -64312230 + (CA)n Simple_repeat Simple_repeat 2 39 0 8 1311 280 255 52 31 chr3 95288006 95288103 -64311680 - PB1 SINE Alu -28 99 1 8 1311 1267 145 24 0 chr3 95288242 95288449 -64311334 - B3 SINE B2 -3 213 2 8 1311 26 50 0 0 chr3 95289217 95289257 -64310526 + AT_rich Low_complexity Low_complexity 1 40 0 8 1312 825 134 174 18 chr3 95289419 95289547 -64310236 + B2_Mm2 SINE B2 1 157 -38 8 1312 225 0 0 0 chr3 95289547 95289572 -64310211 + (TAAA)n Simple_repeat Simple_repeat 1 25 0 8 1312 825 134 174 18 chr3 95289572 95289610 -64310173 + B2_Mm2 SINE B2 158 192 -3 8 1312 1084 88 0 0 chr3 95289611 95289748 -64310035 + B1_Mus1 SINE Alu 2 138 -10 8 1312 310 244 21 32 chr3 95289772 95289865 -64309918 + L1M5 LINE L1 4692 4783 -1363 8 1312 375 319 7 36 chr3 95290077 95290217 -64309566 - B4 SINE B4 -17 275 140 8 1312 618 186 32 0 chr3 95290252 95290376 -64309407 - B1_Mur2 SINE Alu 0 149 22 8 1312 259 194 13 107 chr3 95290314 95290389 -64309394 - MT2B LTR ERVL -361 240 173 8 1312 431 284 24 0 chr3 95290388 95290515 -64309268 - B3 SINE B2 0 216 87 8 1312 221 240 0 0 chr3 95290608 95290658 -64309125 - B3A SINE B2 -147 51 2 8 1312 371 316 72 0 chr3 95292690 95292842 -64306941 - RSINE1 SINE B4 0 165 3 8 1312 946 98 0 0 chr3 95293002 95293145 -64306638 - B1_Mus1 SINE Alu 0 148 6 8 1312 249 182 76 0 chr3 95293155 95293221 -64306562 - Lx7 LINE L1 -12 7684 7614 8 1312 186 128 0 0 chr3 95293251 95293290 -64306493 + (CAGAGA)n Simple_repeat Simple_repeat 2 40 0 8 1312 317 237 0 21 chr3 95293290 95293385 -64306398 - Lx7 LINE L1 -299 7397 7305 8 1312 426 258 22 0 chr3 95293946 95294035 -64305748 + B3A SINE B2 13 103 -95 8 1312 24 53 0 0 chr3 95295465 95295503 -64304280 + AT_rich Low_complexity Low_complexity 1 38 0 8 1312 398 259 70 56 chr3 95296308 95296451 -64303332 + RSINE1 SINE B4 2 146 -19 8 1312 534 179 94 0 chr3 95296494 95296611 -64303172 + B1_Mus1 SINE Alu 15 142 -6 8 1312 1578 42 0 5 chr3 95296872 95297062 -64302721 - B2_Mm1t SINE B2 -4 189 1 8 1312 688 170 0 102 chr3 95297117 95297274 -64302509 - B1_Mur4 SINE Alu 0 150 10 8 1312 233 294 0 0 chr3 95297935 95298003 -64301780 + B4A SINE B4 1 68 -224 8 1312 342 143 0 0 chr3 95299789 95299866 -64299917 + (TGAG)n Simple_repeat Simple_repeat 4 80 0 8 1312 1170 92 0 0 chr3 95302088 95302251 -64297532 - B2_Mm2 SINE B2 -31 164 2 8 1312 446 108 68 0 chr3 95302251 95302323 -64297460 + MTC LTR MaLR 105 181 -240 8 1312 367 268 36 8 chr3 95302399 95302528 -64297255 - B1_Mur1 SINE Alu -9 140 14 8 1312 428 260 57 8 chr3 95304394 95304518 -64295265 + B1_Mur1 SINE Alu 13 142 -7 8 1312 306 0 0 0 chr3 95304578 95304612 -64295171 + (TG)n Simple_repeat Simple_repeat 2 35 0 8 1312 290 282 0 0 chr3 95304966 95305037 -64294746 + ID4_ SINE ID 4 74 -9 8 1312 309 89 0 0 chr3 95305640 95305685 -64294098 + (TG)n Simple_repeat Simple_repeat 1 45 0 8 1312 518 262 21 7 chr3 95306058 95306200 -64293583 - ID_B1 SINE B4 0 224 81 9 1312 333 257 114 0 chr3 95306200 95306305 -64293478 - MIR SINE MIR -115 147 31 9 1312 236 233 117 0 chr3 95306825 95306885 -64292898 - B1F SINE Alu -8 141 75 9 1312 443 281 57 8 chr3 95306889 95307011 -64292772 - ID_B1 SINE B4 -5 219 92 9 1312 346 248 139 66 chr3 95307352 95307503 -64292280 - RSINE1 SINE B4 -2 163 2 9 1312 223 239 60 0 chr3 95307753 95307820 -64291963 + PB1 SINE Alu 6 76 -51 9 1312 467 246 8 34 chr3 95307761 95307879 -64291904 + ID_B1 SINE B4 96 210 -14 9 1312 697 219 81 0 chr3 95308091 95308251 -64291532 - B3 SINE B2 -6 210 38 9 1312 413 19 19 0 chr3 95308338 95308392 -64291391 + (TG)n Simple_repeat Simple_repeat 2 56 0 9 1312 927 104 58 0 chr3 95309146 95309300 -64290483 - B2_Mm2 SINE B2 -5 190 28 9 1312 593 115 0 10 chr3 95309421 95309518 -64290265 + (TTTC)n Simple_repeat Simple_repeat 1 96 0 9 1312 210 318 48 0 chr3 95309804 95309867 -64289916 + PB1D10 SINE Alu 47 112 -5 9 1312 587 298 11 22 chr3 95309894 95310076 -64289707 + B3A SINE B2 1 180 -18 9 1312 198 0 0 0 chr3 95310201 95310223 -64289560 + (TTTTTA)n Simple_repeat Simple_repeat 3 24 0 9 1312 607 229 17 0 chr3 95310239 95310357 -64289426 - PB1D7 SINE Alu 0 120 1 9 1312 291 143 79 0 chr3 95311161 95311224 -64288559 - B1F SINE Alu 0 149 82 9 1312 304 172 35 0 chr3 95311168 95311226 -64288557 - ID_B1 SINE B4 -7 217 158 9 1312 743 42 0 0 chr3 95311434 95311529 -64288254 - B1_Mus2 SINE Alu -11 136 42 9 1312 269 148 112 56 chr3 95311466 95311573 -64288210 - RLTR25B LTR ERVK -519 509 397 9 1312 258 159 0 0 chr3 95311599 95311668 -64288115 + CT-rich Low_complexity Low_complexity 112 180 0 9 1312 362 136 0 33 chr3 95311671 95311732 -64288051 - B1_Mus1 SINE Alu -88 60 2 9 1312 560 170 0 97 chr3 95311806 95311930 -64287853 - PB1D9 SINE Alu -7 113 2 9 1312 532 137 11 0 chr3 95311944 95312039 -64287744 - B1_Mur2 SINE Alu -11 138 43 9 1312 966 228 164 36 chr3 95312080 95312416 -64287367 - MTE2a LTR MaLR 0 379 1 9 1312 783 142 0 60 chr3 95312473 95312623 -64287160 - B1_Mur4 SINE Alu -3 147 7 9 1312 204 125 0 0 chr3 95312630 95312662 -64287121 + (CA)n Simple_repeat Simple_repeat 1 32 0 9 1312 1123 163 17 75 chr3 95313786 95313947 -64285836 - URR1B DNA MER1_type 0 225 78 9 1312 1282 116 26 0 chr3 95313947 95314136 -64285647 + B2_Mm2 SINE B2 2 195 0 9 1312 1123 163 17 75 chr3 95314136 95314213 -64285570 - URR1B DNA MER1_type -148 77 1 9 1312 597 210 199 28 chr3 95314348 95314529 -64285254 - B3 SINE B2 0 216 5 9 1312 3861 101 19 9 chr3 95314594 95315136 -64284647 - Lx2 LINE L1 0 7058 6450 9 1312 367 205 14 15 chr3 95315182 95315274 -64284509 + B1_Mur2 SINE Alu 9 125 -24 9 1312 581 239 21 14 chr3 95315533 95315673 -64284110 + B1_Mur2 SINE Alu 9 149 0 9 1312 234 0 0 0 chr3 95315673 95315699 -64284084 + (A)n Simple_repeat Simple_repeat 1 26 0 9 1312 1360 178 101 0 chr3 95316134 95316432 -64283351 - RMER15 LTR ERVL -3 572 245 9 1312 6968 80 5 7 chr3 95316450 95317376 -64282407 + L1_Mus3 LINE L1 5726 6638 0 9 1312 410 163 0 263 chr3 95317379 95317554 -64282229 - RMER15 LTR ERVL -444 131 3 9 1312 24 0 0 0 chr3 95317886 95317910 -64281873 + AT_rich Low_complexity Low_complexity 1 24 0 9 1312 3385 133 41 94 chr3 95318205 95318953 -64280830 + RMER6A LTR ERVK 48 756 0 9 1312 323 300 67 0 chr3 95319153 95319273 -64280510 + RSINE1 SINE B4 2 129 -36 9 1312 664 251 69 11 chr3 95319482 95319671 -64280112 - B4 SINE B4 -10 282 83 9 1312 1306 79 21 0 chr3 95319684 95319874 -64279909 + B2_Mm2 SINE B2 2 195 0 9 1312 834 212 78 0 chr3 95319886 95320065 -64279718 - B3 SINE B2 -21 195 3 9 1312 654 242 60 6 chr3 95320083 95320266 -64279517 - B3A SINE B2 -5 193 1 9 1312 449 262 122 20 chr3 95320405 95320553 -64279230 + RSINE1 SINE B4 3 165 0 9 1312 936 294 77 45 chr3 95320648 95321140 -64278643 + RLTR18B LTR ERVK 5 512 0 9 1312 295 248 215 8 chr3 95321542 95321672 -64278111 - B3A SINE B2 -41 157 1 9 1312 1026 146 0 0 chr3 95321684 95321911 -64277872 + (CA)n Simple_repeat Simple_repeat 1 227 0 9 1312 720 184 21 7 chr3 95321912 95322054 -64277729 - B1_Mur3 SINE Alu -3 146 3 9 1312 180 0 0 0 chr3 95322060 95322080 -64277703 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 9 1312 300 260 219 0 chr3 95322102 95322198 -64277585 - B1F SINE Alu -31 118 2 9 1312 576 271 87 4 chr3 95322244 95322485 -64277298 + L1MB4 LINE L1 4207 4467 -1679 9 1312 381 234 53 23 chr3 95322509 95322640 -64277143 + B1_Mur3 SINE Alu 2 136 -13 9 1312 786 217 22 0 chr3 95322691 95322829 -64276954 + B1F SINE Alu 1 141 -8 9 1312 261 305 110 21 chr3 95322835 95323026 -64276757 + L1MB4 LINE L1 5823 6030 -150 9 1312 272 262 81 8 chr3 95323021 95323144 -64276639 + L1MC1 LINE L1 6202 6333 0 9 1312 798 331 17 10 chr3 95323296 95323586 -64276197 - B4A SINE B4 0 292 1 9 1312 932 61 104 15 chr3 95323748 95323882 -64275901 + B1_Mm SINE Alu 1 146 -1 9 1312 555 16 0 0 chr3 95323996 95324060 -64275723 + (TTTA)n Simple_repeat Simple_repeat 2 65 0 9 1312 3913 96 0 0 chr3 95324240 95324771 -64275012 + Lx2 LINE L1 6118 6648 -349 9 1312 1487 84 8 38 chr3 95324757 95324992 -64274791 + Lx2 LINE L1 6765 6992 -5 9 1312 231 36 0 0 chr3 95324992 95325020 -64274763 + (GGA)n Simple_repeat Simple_repeat 3 30 0 9 1312 1170 61 7 0 chr3 95325822 95325969 -64273814 + B1_Mus1 SINE Alu 1 148 0 9 1312 926 104 7 7 chr3 95326165 95326300 -64273483 + Lx2 LINE L1 6489 6623 -374 9 1312 279 135 39 0 chr3 95326289 95326341 -64273442 + Lx2 LINE L1 6765 6818 -179 9 1312 1130 134 0 26 chr3 95326396 95326587 -64273196 - URR1B DNA MER1_type -5 220 35 9 1312 581 276 8 0 chr3 95326766 95326893 -64272890 - ID_B1 SINE B4 -18 206 79 9 1312 1476 159 131 19 chr3 95326929 95327288 -64272495 + MTD LTR MaLR 12 410 -9 9 1312 450 0 0 0 chr3 95327381 95327431 -64272352 + (CA)n Simple_repeat Simple_repeat 1 50 0 9 1312 452 301 70 51 chr3 95327457 95327730 -64272053 + B4 SINE B4 15 292 0 9 1312 803 197 149 0 chr3 95327972 95328160 -64271623 + B3 SINE B2 1 216 0 9 1312 1224 80 0 0 chr3 95328345 95328737 -64271046 + (CTG)n Simple_repeat Simple_repeat 1 392 0 9 1312 379 270 0 0 chr3 95328916 95329016 -64270767 + ID_B1 SINE B4 124 223 -1 9 1312 578 230 54 79 chr3 95329025 95329228 -64270555 + B3A SINE B2 1 198 0 9 1312 270 161 52 35 chr3 95329610 95329668 -64270115 - B1F SINE Alu 0 149 91 9 1312 186 71 0 0 chr3 95329739 95329767 -64270016 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 9 1312 260 272 91 18 chr3 95329843 95330008 -64269775 + L1M5 LINE L1 5280 5456 -738 9 1312 272 352 0 19 chr3 95330052 95330214 -64269569 + (TG)n Simple_repeat Simple_repeat 1 159 0 9 1312 330 113 19 0 chr3 95330294 95330347 -64269436 - HAL1-3A_ME LINE L1 -843 2015 1962 9 1312 622 144 200 0 chr3 95331139 95331264 -64268519 + B1_Mur4 SINE Alu 1 150 0 9 1312 180 152 0 0 chr3 95331264 95331297 -64268486 + (TAA)n Simple_repeat Simple_repeat 1 33 0 9 1312 712 201 0 34 chr3 95331358 95331507 -64268276 - B1F2 SINE Alu -3 146 3 9 1312 279 237 94 31 chr3 95331765 95331861 -64267922 - PB1 SINE Alu -25 102 1 9 1312 1086 88 0 0 chr3 95332000 95332147 -64267636 - B1_Mus1 SINE Alu 0 148 2 9 1312 870 179 12 24 chr3 95332227 95332393 -64267390 + B2_Mm2 SINE B2 1 164 -31 9 1312 192 77 0 0 chr3 95332397 95332423 -64267360 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 9 1312 737 227 109 40 chr3 95332527 95332566 -64267217 - B3 SINE B2 0 216 167 9 1312 351 0 0 0 chr3 95332566 95332605 -64267178 + (TG)n Simple_repeat Simple_repeat 1 39 0 9 1312 737 227 109 40 chr3 95332605 95332767 -64267016 - B3 SINE B2 -50 166 1 9 1312 540 0 0 0 chr3 95332786 95332846 -64266937 + (TTA)n Simple_repeat Simple_repeat 2 61 0 9 1312 633 188 61 30 chr3 95332848 95332980 -64266803 - B1_Mur2 SINE Alu -13 136 1 9 1312 261 336 54 54 chr3 95333117 95333246 -64266537 + B4 SINE B4 70 198 -94 9 1312 554 269 0 60 chr3 95333142 95333292 -64266491 + B1F SINE Alu 9 149 0 9 1312 251 338 26 0 chr3 95333931 95334008 -64265775 + B4A SINE B4 3 81 -211 9 1312 395 152 0 12 chr3 95334874 95334954 -64264829 + GA-rich Low_complexity Low_complexity 2 80 0 9 1312 1092 189 51 0 chr3 95335063 95335259 -64264524 - B3 SINE B2 -9 207 2 9 1312 1045 201 9 53 chr3 95335274 95335500 -64264283 - B3 SINE B2 0 216 1 9 1312 23 33 0 0 chr3 95335501 95335531 -64264252 + AT_rich Low_complexity Low_complexity 1 30 0 9 1312 311 248 50 25 chr3 95335553 95335673 -64264110 - B3A SINE B2 -68 130 8 9 1312 829 166 21 21 chr3 95335769 95335911 -64263872 - B1_Mur3 SINE Alu -5 144 3 9 1312 209 125 25 0 chr3 95336217 95336257 -64263526 + (TTAA)n Simple_repeat Simple_repeat 3 43 0 9 1312 858 300 34 19 chr3 95336313 95336636 -64263147 - L1MA7 LINE L1 -365 5926 5599 9 1312 270 0 0 0 chr3 95336759 95336789 -64262994 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 9 1312 1133 224 180 36 chr3 95336803 95337293 -64262490 - RLTR20D LTR ERVK -8 543 2 9 1312 709 263 58 0 chr3 95337319 95337490 -64262293 - B3A SINE B2 -16 182 2 9 1312 234 0 0 0 chr3 95337513 95337539 -64262244 + (A)n Simple_repeat Simple_repeat 1 26 0 9 1312 526 269 80 5 chr3 95337570 95337757 -64262026 - L1MA7 LINE L1 -1134 5009 4809 9 1312 501 311 90 14 chr3 95337772 95338049 -64261734 - L1MA7 LINE L1 -1399 4744 4447 9 1312 232 250 0 0 chr3 95338072 95338116 -64261667 + MER2 DNA MER2_type 24 67 -278 1 1312 258 291 12 124 chr3 95338103 95338264 -64261519 - YREP_Mm Unknown Unknown -1484 328 186 1 1312 605 242 0 64 chr3 95338125 95338266 -64261517 + ID_B1 SINE B4 86 217 -7 1 1312 679 244 18 42 chr3 95338267 95338434 -64261349 + RSINE1 SINE B4 2 164 -1 1 1312 524 302 17 44 chr3 95338551 95338731 -64261052 - B3A SINE B2 -16 182 8 1 1312 1312 140 80 0 chr3 95338939 95339139 -64260644 - B3 SINE B2 0 216 1 1 1312 411 265 19 19 chr3 95339139 95339243 -64260540 - B1F SINE Alu -22 127 24 1 1312 1553 53 16 11 chr3 95339405 95339594 -64260189 - B2_Mm2 SINE B2 -4 191 2 1 1312 370 234 13 0 chr3 95339630 95339707 -64260076 - B4A SINE B4 -213 79 2 1 1312 210 118 0 0 chr3 95339778 95339812 -64259971 + (T)n Simple_repeat Simple_repeat 1 34 0 1 1312 1235 81 0 0 chr3 95339812 95339960 -64259823 - B1_Mus1 SINE Alu 0 148 1 1 1312 411 275 89 30 chr3 95340301 95340436 -64259347 + ID_B1 SINE B4 82 224 0 1 1312 634 236 89 42 chr3 95340539 95340729 -64259054 - B3 SINE B2 -16 200 2 1 1312 336 161 0 0 chr3 95341224 95341286 -64258497 + (CGG)n Simple_repeat Simple_repeat 2 63 0 1 1312 383 250 39 29 chr3 95341299 95341402 -64258381 + PB1D10 SINE Alu 14 117 0 1 1312 2645 134 39 15 chr3 95341443 95341852 -64257931 + MTC LTR MaLR 1 419 -2 1 1312 446 272 8 26 chr3 95341992 95342109 -64257674 + B1F1 SINE Alu 33 147 -2 1 1312 234 150 0 0 chr3 95342110 95342150 -64257633 + (GA)n Simple_repeat Simple_repeat 1 40 0 1 1312 21 82 0 0 chr3 95342287 95342336 -64257447 + AT_rich Low_complexity Low_complexity 1 49 0 1 1312 684 233 82 0 chr3 95342423 95342582 -64257201 + B3A SINE B2 9 180 -18 1 1312 625 291 84 58 chr3 95343042 95343414 -64256369 - RLTR26 LTR ERVK -207 435 1 1 1312 722 217 58 26 chr3 95343697 95343886 -64255897 + B2_Mm2 SINE B2 1 195 0 1 1312 1440 94 6 0 chr3 95344043 95344224 -64255559 - B2_Mm1t SINE B2 -10 183 2 1 1312 523 192 25 13 chr3 95344301 95344459 -64255324 + C-rich Low_complexity Low_complexity 1 160 0 1 1312 406 213 147 9 chr3 95344474 95344583 -64255200 - ID_B1 SINE B4 -15 209 86 1 1312 2285 60 0 0 chr3 95344908 95345190 -64254593 - L1_Mus3 LINE L1 -299 6339 6058 1 1312 2348 58 41 3 chr3 95345190 95345483 -64254300 + L1_Mus3 LINE L1 6333 6636 -2 1 1312 495 87 0 0 chr3 95345656 95345725 -64254058 + (CA)n Simple_repeat Simple_repeat 2 70 0 1 1312 1251 41 0 7 chr3 95345905 95346053 -64253730 + B1_Mus2 SINE Alu 1 147 0 1 1312 450 0 0 0 chr3 95346523 95346573 -64253210 + (GA)n Simple_repeat Simple_repeat 1 50 0 1 1312 859 201 6 30 chr3 95346588 95346752 -64253031 + RSINE1 SINE B4 6 165 0 1 1312 762 143 0 0 chr3 95346756 95346889 -64252894 + (GGGA)n Simple_repeat Simple_repeat 4 136 0 1 1312 224 184 0 0 chr3 95347281 95347319 -64252464 - B1F SINE Alu -27 122 85 1 1312 236 167 0 0 chr3 95347285 95347321 -64252462 - ID_B1 SINE B4 -28 196 161 1 1312 576 0 0 0 chr3 95347414 95347478 -64252305 + (TC)n Simple_repeat Simple_repeat 1 64 0 1 1312 645 162 111 0 chr3 95347495 95347591 -64252192 - B1_Mus1 SINE Alu -6 142 34 1 1312 798 262 5 55 chr3 95347591 95347793 -64251990 + B3A SINE B2 1 192 -6 1 1312 813 238 62 21 chr3 95348000 95348027 -64251756 - B3 SINE B2 -13 203 176 1 1312 189 0 0 0 chr3 95348027 95348048 -64251735 + (GA)n Simple_repeat Simple_repeat 1 21 0 1 1312 396 0 0 0 chr3 95348048 95348091 -64251692 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 1312 813 238 62 21 chr3 95348091 95348255 -64251528 - B3 SINE B2 -41 175 4 1 1312 1094 137 130 25 chr3 95348779 95349018 -64250765 - RMER10A LTR ERVL -157 285 22 1 1312 410 267 28 19 chr3 95349663 95349770 -64250013 - ID_B1 SINE B4 -31 193 86 1 1312 518 240 98 16 chr3 95350002 95350125 -64249658 + RSINE1 SINE B4 3 135 -30 1 1312 671 174 26 0 chr3 95350303 95350418 -64249365 - B1_Mur1 SINE Alu 0 149 32 1 1312 271 279 22 90 chr3 95350319 95350453 -64249330 - RLTR25B LTR ERVK -505 523 399 1 1312 550 175 341 24 chr3 95351079 95351243 -64248540 + B3 SINE B2 1 216 0 1 1312 183 240 80 0 chr3 95351274 95351324 -64248459 - MIRb SINE MIR -159 109 56 1 1312 242 232 13 104 chr3 95351376 95351453 -64248330 + B1F2 SINE Alu 21 90 -59 1 1312 490 303 32 0 chr3 95351693 95351878 -64247905 + L1M2 LINE L1 4598 4788 -1355 1 1312 931 85 92 7 chr3 95351932 95352021 -64247762 + B2_Mm2 SINE B2 9 96 -99 1 1312 243 0 0 0 chr3 95352021 95352048 -64247735 + (AACTG)n Simple_repeat Simple_repeat 2 28 0 1 1312 931 85 92 7 chr3 95352048 95352100 -64247683 + B2_Mm2 SINE B2 97 161 -34 1 1312 180 0 0 0 chr3 95352100 95352120 -64247663 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 1 1312 463 212 0 23 chr3 95352142 95352229 -64247554 + B1F2 SINE Alu 1 85 -64 1 1312 801 181 372 28 chr3 95352244 95352279 -64247504 - MTD LTR MaLR -29 390 356 1 1312 3765 15 2 0 chr3 95352279 95352674 -64247109 - MTA_Mm LTR MaLR 0 396 1 1 1312 801 181 372 28 chr3 95352674 95352928 -64246855 - MTD LTR MaLR -64 355 1 1 1312 314 161 0 67 chr3 95352930 95352990 -64246793 + B1F1 SINE Alu 85 140 -9 1 1312 963 233 111 20 chr3 95352992 95353298 -64246485 + L1M2 LINE L1 5473 5806 -485 1 1312 24 0 0 0 chr3 95353301 95353325 -64246458 + AT_rich Low_complexity Low_complexity 1 24 0 1 1312 756 276 19 33 chr3 95353327 95353537 -64246246 + ID_B1 SINE B4 2 208 -16 1 1312 1583 178 176 33 chr3 95354234 95354570 -64245213 + ORR1C2 LTR MaLR 1 384 0 1 1312 708 241 14 0 chr3 95354643 95354784 -64244999 - B1F1 SINE Alu -2 147 5 1 1312 296 260 63 112 chr3 95354665 95354808 -64244975 - MT2B LTR ERVL -327 274 139 1 1312 303 288 0 70 chr3 95355545 95355605 -64244178 - RSINE1 SINE B4 -84 81 23 1 1312 1711 211 16 45 chr3 95355605 95355986 -64243797 - ORR1D2 LTR MaLR 0 370 1 1 1312 303 288 0 70 chr3 95355986 95356011 -64243772 - RSINE1 SINE B4 -143 22 2 1 1312 727 266 28 11 chr3 95356306 95356485 -64243298 - B3A SINE B2 0 198 17 1 1312 237 363 18 9 chr3 95356479 95356593 -64243190 - MLT1C LTR MaLR -40 427 313 1 1312 856 126 51 15 chr3 95356834 95356971 -64242812 - B1_Mus1 SINE Alu 0 148 7 1 1312 592 191 18 9 chr3 95357045 95357156 -64242627 + B3 SINE B2 105 216 0 1 1312 773 234 14 0 chr3 95357176 95357321 -64242462 + B1_Mur4 SINE Alu 2 148 -2 1 1312 1610 54 0 11 chr3 95357327 95357515 -64242268 + B2_Mm2 SINE B2 2 187 -8 1 1312 425 228 56 56 chr3 95357554 95357661 -64242122 + ID_B1 SINE B4 93 199 -25 1 1312 219 36 0 0 chr3 95357663 95357691 -64242092 + (CA)n Simple_repeat Simple_repeat 1 28 0 1 1312 527 43 14 0 chr3 95357720 95357790 -64241993 + (GGAA)n Simple_repeat Simple_repeat 1 71 0 1 1312 496 255 170 79 chr3 95357795 95358072 -64241711 - MLT1C LTR MaLR -159 308 7 1 1312 434 280 32 71 chr3 95358390 95358544 -64241239 - ID_B1 SINE B4 0 224 77 1 1312 803 157 40 60 chr3 95358776 95358925 -64240858 + B1_Mus2 SINE Alu 1 146 -1 1 1312 272 250 165 38 chr3 95358984 95359063 -64240720 + ID_B1 SINE B4 81 169 -55 1 1312 1046 99 35 0 chr3 95359073 95359215 -64240568 + B1_Mus2 SINE Alu 1 147 0 1 1312 189 107 0 0 chr3 95359217 95359245 -64240538 + (GAAAA)n Simple_repeat Simple_repeat 2 29 0 1 1312 363 315 27 0 chr3 95359448 95359559 -64240224 + PB1D7 SINE Alu 7 120 0 1 1312 660 140 65 0 chr3 95359593 95359700 -64240083 + B1_Mur1 SINE Alu 21 134 -15 1 1312 854 161 268 0 chr3 95359718 95359886 -64239897 + B3 SINE B2 4 216 0 1 1312 21 57 0 0 chr3 95359949 95359984 -64239799 + AT_rich Low_complexity Low_complexity 1 35 0 1 1312 837 205 0 20 chr3 95360462 95360611 -64239172 + B1_Mur3 SINE Alu 4 149 0 1 1312 1866 92 25 22 chr3 95360639 95360916 -64238867 + L1_Mus3 LINE L1 6361 6638 0 1 1312 1410 71 43 5 chr3 95361052 95361236 -64238547 + B2_Mm1t SINE B2 1 191 -2 1 1312 630 301 7 0 chr3 95361489 95361642 -64238141 - RSINE1 SINE B4 -8 157 4 1 1312 3905 78 2 33 chr3 95361672 95362188 -64237595 - L1_Mus2 LINE L1 0 6566 6067 1 1312 1141 75 0 0 chr3 95362222 95362356 -64237427 + B1_Mm SINE Alu 1 134 -13 1 1312 196 53 26 26 chr3 95362356 95362395 -64237388 + (CAAA)n Simple_repeat Simple_repeat 1 39 0 1 1312 414 0 0 0 chr3 95362580 95362626 -64237157 + (TG)n Simple_repeat Simple_repeat 2 47 0 1 1312 238 287 69 78 chr3 95362675 95362777 -64237006 + PB1D10 SINE Alu 16 116 -1 1 1312 440 268 54 61 chr3 95362782 95362929 -64236854 + RSINE1 SINE B4 3 148 -17 1 1312 207 0 0 0 chr3 95363023 95363046 -64236737 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 1 1312 930 154 15 0 chr3 95363053 95363189 -64236594 - B1_Mur4 SINE Alu -12 138 1 1 1312 419 124 0 27 chr3 95364005 95364079 -64235704 + B1_Mur1 SINE Alu 75 141 -8 1 1312 656 159 55 48 chr3 95364158 95364303 -64235480 + B1_Mus2 SINE Alu 2 147 0 1 1312 494 287 68 27 chr3 95364410 95364557 -64235226 - RSINE1 SINE B4 -10 155 3 1 1312 21 0 0 0 chr3 95364637 95364658 -64235125 + AT_rich Low_complexity Low_complexity 1 21 0 1 1312 444 318 16 0 chr3 95364701 95364827 -64234956 - ID_B1 SINE B4 -13 211 84 1 1312 1080 121 7 0 chr3 95364861 95365010 -64234773 - B1_Mur4 SINE Alu 0 150 1 1 1312 706 207 50 0 chr3 95365651 95365791 -64233992 - B1F2 SINE Alu -2 147 1 1 1312 568 266 152 0 chr3 95365809 95365993 -64233790 - B3 SINE B2 0 216 5 1 1312 972 147 7 0 chr3 95366022 95366165 -64233618 - B1_Mur3 SINE Alu -1 148 5 1 1312 863 225 227 15 chr3 95366596 95367006 -64232777 - L1MB8 LINE L1 0 6178 5682 1 1312 266 299 78 0 chr3 95367009 95367022 -64232761 - BC1_Mm scRNA scRNA -63 89 7 1 1312 329 281 0 0 chr3 95367022 95367086 -64232697 - tRNA-Ala-GCA tRNA tRNA -11 64 1 1 1312 1111 80 33 49 chr3 95367220 95367404 -64232379 - L1Md_F2 LINE L1 0 6582 6402 1 1312 306 53 0 0 chr3 95367483 95367521 -64232262 - L1Md_F2 LINE L1 -143 6439 6402 1 1312 565 245 7 54 chr3 95367685 95367701 -64232082 + ID_B1 SINE B4 78 93 -131 1 1312 2408 102 116 0 chr3 95367701 95368054 -64231729 - ORR1B1 LTR MaLR 0 394 1 1 1312 565 245 7 54 chr3 95368054 95368184 -64231599 + ID_B1 SINE B4 94 217 -7 1 1312 681 236 16 0 chr3 95368188 95368315 -64231468 + B1_Mur2 SINE Alu 1 129 -20 1 1312 345 75 0 0 chr3 95368452 95368505 -64231278 + (T)n Simple_repeat Simple_repeat 1 53 0 1 1312 1277 61 0 0 chr3 95368505 95368652 -64231131 - B1_Mm SINE Alu 0 147 1 1 1312 300 173 319 26 chr3 95368671 95368784 -64230999 - B2_Mm2 SINE B2 -3 192 47 1 1312 1104 131 60 0 chr3 95368816 95368984 -64230799 - B2_Mm1t SINE B2 -14 179 2 1 1312 1953 176 94 8 chr3 95369018 95369390 -64230393 - MTC LTR MaLR 0 421 18 1 1312 884 218 65 15 chr3 95369624 95369824 -64229959 - B3 SINE B2 -6 210 1 1 1312 867 287 20 5 chr3 95369825 95370028 -64229755 - ID_B1 SINE B4 -6 218 13 1 1312 560 248 9 9 chr3 95370139 95370249 -64229534 + PB1D10 SINE Alu 1 110 -7 1 1312 22 0 0 0 chr3 95370276 95370298 -64229485 + AT_rich Low_complexity Low_complexity 1 22 0 1 1312 588 308 31 19 chr3 95370301 95370463 -64229320 + RSINE1 SINE B4 2 165 0 1 1312 205 170 43 0 chr3 95370485 95370532 -64229251 + (TTAA)n Simple_repeat Simple_repeat 3 51 0 1 1312 1391 47 129 0 chr3 95370886 95371056 -64228727 - B2_Mm1t SINE B2 0 193 2 1 1312 1013 130 14 7 chr3 95371077 95371224 -64228559 - B1_Mur4 SINE Alu 0 150 3 1 1312 768 274 29 0 chr3 95371276 95371451 -64228332 - B3A SINE B2 -17 181 2 1 1312 23 33 0 0 chr3 95371561 95371591 -64228192 + AT_rich Low_complexity Low_complexity 1 30 0 1 1312 487 260 169 17 chr3 95371779 95371951 -64227832 - B3A SINE B2 0 198 1 1 1312 351 0 0 0 chr3 95371963 95372002 -64227781 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 1 1312 544 230 99 38 chr3 95372002 95372133 -64227650 - B1_Mur1 SINE Alu -10 139 1 1 1312 451 341 30 0 chr3 95372357 95372489 -64227294 - ID_B1 SINE B4 -5 219 84 1 1312 545 255 19 0 chr3 95372516 95372622 -64227161 - PB1D9 SINE Alu -11 109 2 1 1312 22 56 0 0 chr3 95372625 95372661 -64227122 + AT_rich Low_complexity Low_complexity 1 36 0 1 1312 298 311 54 0 chr3 95372666 95372740 -64227043 + ID4_ SINE ID 3 80 -3 1 1312 231 244 73 49 chr3 95372801 95372883 -64226900 - B1F2 SINE Alu -2 147 64 1 1312 1044 117 0 33 chr3 95372934 95373085 -64226698 - B1_Mus1 SINE Alu -1 147 2 1 1312 743 154 8 1 chr3 95373280 95373420 -64226363 + B1_Mus2 SINE Alu 7 146 -2 1 1312 1272 90 83 11 chr3 95373509 95373689 -64226094 - B2_Mm2 SINE B2 -1 194 2 1 1312 601 209 9 26 chr3 95373691 95373804 -64225979 - B1F2 SINE Alu -1 148 38 1 1312 1485 68 10 40 chr3 95373873 95374072 -64225711 + B2_Mm1t SINE B2 1 193 0 1 1312 653 217 49 42 chr3 95374154 95374298 -64225485 + B1_Mur2 SINE Alu 2 146 -3 1 1312 274 45 0 43 chr3 95374337 95374383 -64225400 + (GAAA)n Simple_repeat Simple_repeat 1 44 0 1 1312 244 365 14 0 chr3 95374419 95374493 -64225290 - tRNA-Ala-GCA tRNA tRNA 0 75 1 1 1312 913 157 7 0 chr3 95374963 95375103 -64224680 - B1_Mur3 SINE Alu 0 149 9 1 1312 21 0 0 0 chr3 95375111 95375132 -64224651 + AT_rich Low_complexity Low_complexity 1 21 0 1 1312 1175 54 0 149 chr3 95375319 95375514 -64224269 - L1Md_F2 LINE L1 -12 6570 6405 1 1312 570 253 220 22 chr3 95375516 95375698 -64224085 - ID_B1 SINE B4 0 224 7 1 1312 660 167 0 0 chr3 95375701 95375803 -64223980 - B1_Mur3 SINE Alu -5 144 43 1 1312 493 264 58 0 chr3 95375867 95375988 -64223795 - B1F SINE Alu -13 136 9 1 1312 474 272 45 147 chr3 95375988 95376091 -64223692 - ID_B1 SINE B4 -13 211 11 1 1312 21 0 0 0 chr3 95376187 95376208 -64223575 + AT_rich Low_complexity Low_complexity 1 21 0 1 1312 681 318 71 48 chr3 95376209 95376477 -64223306 - B4A SINE B4 -14 278 5 1 1312 560 304 123 12 chr3 95376618 95376788 -64222995 + ID_B1 SINE B4 2 190 -34 1 1312 567 314 32 7 chr3 95376888 95377042 -64222741 + Lx8 LINE L1 7172 7329 -144 1 1312 926 195 0 7 chr3 95377218 95377368 -64222415 - B1_Mur2 SINE Alu 0 149 1 1 1312 695 216 0 7 chr3 95377613 95377759 -64222024 + B1_Mur1 SINE Alu 3 141 -8 1 1312 351 350 8 8 chr3 95377781 95377899 -64221884 + ID_B1 SINE B4 84 201 -23 1 1312 1343 145 16 109 chr3 95378317 95378565 -64221218 + URR1B DNA MER1_type 1 225 0 1 1312 1563 50 6 6 chr3 95378600 95378781 -64221002 + B2_Mm2 SINE B2 1 181 -14 1 1312 541 292 0 20 chr3 95379657 95379804 -64219979 + 7SK RNA RNA 1 144 -187 1 1312 567 264 30 55 chr3 95380493 95380657 -64219126 + B3A SINE B2 1 160 -38 1 1312 228 111 0 0 chr3 95380661 95380697 -64219086 + (CAGA)n Simple_repeat Simple_repeat 3 38 0 1 1312 250 351 39 0 chr3 95380961 95381038 -64218745 - ID4_ SINE ID -3 80 1 1 1312 33 0 0 0 chr3 95381038 95381071 -64218712 + AT_rich Low_complexity Low_complexity 1 33 0 1 1312 1395 104 11 0 chr3 95381086 95381269 -64218514 + B2_Mm1t SINE B2 1 185 -8 1 1312 301 307 28 35 chr3 95381300 95381442 -64218341 + L1M5 LINE L1 5681 5821 -303 1 1312 1318 80 39 11 chr3 95381571 95381749 -64218034 + B2_Mm2 SINE B2 2 184 -11 1 1312 496 245 47 0 chr3 95382469 95382575 -64217208 - ID_B1 SINE B4 -25 199 89 1 1312 264 277 66 74 chr3 95382486 95382607 -64217176 - MT2B2 LTR ERVL -332 252 133 1 1312 1238 97 1 6 chr3 95382618 95382796 -64216987 + B2_Mm2 SINE B2 2 188 -28 1 1312 459 0 0 0 chr3 95382796 95382847 -64216936 + (TG)n Simple_repeat Simple_repeat 2 52 0 1 1312 821 228 86 25 chr3 95382847 95382866 -64216917 + B3 SINE B2 189 211 -5 1 1312 561 317 75 56 chr3 95382891 95383105 -64216678 + B4A SINE B4 3 220 -72 1 1312 445 333 57 66 chr3 95383096 95383120 -64216663 + B4 SINE B4 65 124 -168 1 1312 721 199 15 8 chr3 95383120 95383252 -64216531 + B1_Mur1 SINE Alu 6 138 -11 1 1312 445 333 57 66 chr3 95383252 95383308 -64216475 + B4 SINE B4 125 274 -18 1 1312 527 177 189 24 chr3 95383638 95383765 -64216018 + B1_Mur3 SINE Alu 2 149 0 1 1312 588 281 22 0 chr3 95384214 95384353 -64215430 - B1F1 SINE Alu -2 147 6 1 1312 716 243 112 6 chr3 95384358 95384392 -64215391 - B3A SINE B2 -1 197 152 1 1312 180 0 0 0 chr3 95384392 95384412 -64215371 + (TG)n Simple_repeat Simple_repeat 2 21 0 1 1312 716 243 112 6 chr3 95384412 95384555 -64215228 - B3A SINE B2 -47 151 2 1 1312 1191 156 0 5 chr3 95384656 95384843 -64214940 - B2_Mm2 SINE B2 -8 187 2 1 1312 605 313 7 13 chr3 95384939 95385088 -64214695 + RSINE1 SINE B4 3 150 -15 1 1312 180 0 0 0 chr3 95385173 95385193 -64214590 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 1 1312 491 293 40 16 chr3 95385205 95385330 -64214453 - B1F1 SINE Alu -17 132 5 1 1312 368 55 18 0 chr3 95385587 95385642 -64214141 + (TC)n Simple_repeat Simple_repeat 1 56 0 1 1312 576 216 45 0 chr3 95385652 95385763 -64214020 - B1_Mur2 SINE Alu -27 122 7 1 1312 5105 105 22 36 chr3 95385768 95386589 -64213194 - RMER17D2 LTR ERVK 0 809 1 1 1312 372 91 0 0 chr3 95386821 95386837 -64212946 + (A)n Simple_repeat Simple_repeat 1 16 0 1 1312 1233 82 0 0 chr3 95386837 95386984 -64212799 + B1_Mm SINE Alu 1 147 0 1 1312 372 91 0 0 chr3 95386984 95387022 -64212761 + (A)n Simple_repeat Simple_repeat 1 38 0 1 1312 422 209 152 18 chr3 95387022 95387134 -64212649 - PB1D10 SINE Alu -13 136 10 1 1312 360 265 27 73 chr3 95387044 95387154 -64212629 - ID_B1 SINE B4 -44 180 76 1 1312 448 273 124 8 chr3 95387184 95387313 -64212470 - B1_Mur2 SINE Alu -2 147 4 1 1312 21 36 0 0 chr3 95387385 95387413 -64212370 + AT_rich Low_complexity Low_complexity 1 28 0 1 1312 637 288 45 6 chr3 95387415 95387572 -64212211 - RSINE1 SINE B4 0 165 3 1 1312 579 184 30 10 chr3 95387684 95387783 -64212000 + B3A SINE B2 1 101 -97 1 1312 25 31 0 0 chr3 95387819 95387851 -64211932 + AT_rich Low_complexity Low_complexity 1 32 0 1 1312 393 214 184 18 chr3 95387959 95388073 -64211710 + B1F2 SINE Alu 10 142 -7 1 1312 297 224 228 6 chr3 95388241 95388403 -64211380 + L1MB5 LINE L1 5743 5940 -234 1 1312 1192 40 0 7 chr3 95388478 95388631 -64211152 + B2_Mm2 SINE B2 1 152 -43 1 1312 356 0 23 0 chr3 95388634 95388678 -64211105 + (TAAA)n Simple_repeat Simple_repeat 4 48 0 1 1312 362 167 0 89 chr3 95388679 95388758 -64211025 + PB1D9 SINE Alu 41 112 -8 1 1312 230 216 0 0 chr3 95389252 95389303 -64210480 + B1_Mur4 SINE Alu 100 150 0 1 1312 755 126 0 8 chr3 95389303 95389431 -64210352 + (GAAA)n Simple_repeat Simple_repeat 3 129 0 1 1312 480 186 43 17 chr3 95389487 95389602 -64210181 - B3A SINE B2 -76 122 5 1 1312 269 286 24 12 chr3 95389909 95389994 -64209789 - ID_B1 SINE B4 -52 172 87 1 1312 727 32 11 0 chr3 95390226 95390321 -64209462 + B1_Mus2 SINE Alu 52 147 0 1 1312 237 65 0 0 chr3 95390331 95390362 -64209421 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1 1312 664 286 27 31 chr3 95390403 95390627 -64209156 + ID_B1 SINE B4 2 224 0 1 1312 322 358 59 7 chr3 95390706 95390858 -64208925 + RSINE1 SINE B4 4 163 -2 1 1312 543 296 53 5 chr3 95390881 95391068 -64208715 + B3A SINE B2 1 196 -2 1 1312 1167 44 0 0 chr3 95391115 95391251 -64208532 + B1_Mm SINE Alu 3 138 -9 1 1312 1458 75 5 0 chr3 95391803 95391990 -64207793 - B2_Mm1t SINE B2 -4 189 2 1 1312 844 158 15 22 chr3 95393904 95394040 -64205743 + B1_Mus1 SINE Alu 3 137 -11 1 1312 366 139 118 70 chr3 95394313 95394499 -64205284 + RMER17C LTR ERVK 80 274 -136 1 1312 1159 58 40 23 chr3 95394508 95394685 -64205098 - B2_Mm2 SINE B2 -14 181 2 1 1312 617 193 294 12 chr3 95394853 95395016 -64204767 + B3 SINE B2 2 210 -6 1 1312 446 279 32 58 chr3 95395048 95395204 -64204579 + RSINE1 SINE B4 8 159 -6 1 1312 360 355 41 0 chr3 95396143 95396264 -64203519 + B1F2 SINE Alu 4 129 -20 1 1312 302 224 39 13 chr3 95396350 95396427 -64203356 + PB1D7 SINE Alu 1 79 -41 1 1312 534 221 8 69 chr3 95396359 95396490 -64203293 + ID_B1 SINE B4 91 213 -11 1 1312 1537 47 11 0 chr3 95396490 95396680 -64203103 + B2_Mm1a SINE B2 1 192 -1 1 1312 659 172 36 36 chr3 95396725 95396864 -64202919 + B1_Mur2 SINE Alu 9 147 -2 1 1312 968 157 28 23 chr3 95396966 95397142 -64202641 + B2_Mm2 SINE B2 5 181 -14 1 1312 1254 20 0 20 chr3 95397166 95397316 -64202467 - B1_Mm SINE Alu 0 147 1 1 1312 244 220 71 71 chr3 95397367 95397465 -64202318 + PB1D10 SINE Alu 19 116 -1 1 1312 1247 118 0 35 chr3 95397479 95397680 -64202103 - B2_Mm2 SINE B2 0 195 2 1 1312 694 248 54 44 chr3 95397897 95398100 -64201683 - ID_B1 SINE B4 -18 206 2 1 1312 219 231 172 21 chr3 95398119 95398212 -64201571 - B1_Mur4 SINE Alu 0 150 44 1 1312 191 36 36 0 chr3 95398382 95398410 -64201373 + (TG)n Simple_repeat Simple_repeat 2 30 0 1 1312 693 197 39 0 chr3 95398463 95398590 -64201193 - RSINE1 SINE B4 -33 132 1 1 1312 581 240 113 62 chr3 95398763 95398958 -64200825 + B3 SINE B2 2 206 -10 1 1312 438 336 106 59 chr3 95399169 95399406 -64200377 - B4A SINE B4 0 292 45 1 1312 527 210 25 8 chr3 95399489 95399609 -64200174 + ID_B1 SINE B4 103 224 0 1 1312 774 203 14 7 chr3 95399617 95399761 -64200022 + B1_Mur1 SINE Alu 2 146 -3 1 1312 1226 34 0 13 chr3 95399782 95399932 -64199851 + B1_Mus1 SINE Alu 1 148 0 1 1312 314 302 8 79 chr3 95400004 95400045 -64199738 + PB1D10 SINE Alu 1 36 -81 1 1312 1259 159 23 5 chr3 95400045 95400266 -64199517 + URR1B DNA MER1_type 1 225 0 1 1312 314 302 8 79 chr3 95400266 95400350 -64199433 + PB1D10 SINE Alu 37 117 0 1 1312 1216 61 0 0 chr3 95400366 95400513 -64199270 + B1_Mus1 SINE Alu 2 148 0 1 1312 582 307 41 50 chr3 95400575 95400894 -64198889 - Lx8 LINE L1 -3 7470 7155 1 1312 326 247 100 62 chr3 95400967 95401076 -64198707 + L1ME3B LINE L1 5892 6005 -235 1 1312 1396 75 16 11 chr3 95401076 95401264 -64198519 + B2_Mm2 SINE B2 1 189 -6 1 1312 326 247 100 62 chr3 95401264 95401314 -64198469 + L1ME3B LINE L1 6006 6056 -184 1 1312 798 130 0 31 chr3 95401348 95401475 -64198308 + B3 SINE B2 1 123 -93 1 1312 38 39 0 0 chr3 95401513 95401565 -64198218 + AT_rich Low_complexity Low_complexity 1 52 0 1 1312 228 338 13 13 chr3 95401788 95401866 -64197917 - RSINE1 SINE B4 0 165 88 1 1312 478 221 0 10 chr3 95401944 95402040 -64197743 - RSINE1 SINE B4 -68 97 3 1 1312 396 262 0 0 chr3 95402075 95402155 -64197628 + PB1D7 SINE Alu 1 80 -40 1 1312 628 216 157 66 chr3 95402179 95402283 -64197500 + ID_B1 SINE B4 2 131 -93 1 1312 1148 62 7 0 chr3 95402283 95402429 -64197354 + B1_Mus1 SINE Alu 2 148 0 1 1312 628 216 157 66 chr3 95402429 95402522 -64197261 + ID_B1 SINE B4 132 217 -7 1 1312 864 194 51 17 chr3 95403202 95403380 -64196403 - B3 SINE B2 -19 197 14 1 1312 281 341 0 0 chr3 95403382 95403464 -64196319 + RSINE1 SINE B4 84 165 0 1 1312 21 57 0 0 chr3 95403476 95403511 -64196272 + AT_rich Low_complexity Low_complexity 1 35 0 1 1312 305 138 35 0 chr3 95403600 95403658 -64196125 - MTE2a LTR MaLR -4 375 316 1 1312 1268 58 0 11 chr3 95403661 95403837 -64195946 + B2_Mm2 SINE B2 2 175 -20 1 1312 213 121 0 0 chr3 95403844 95403877 -64195906 + (GAAA)n Simple_repeat Simple_repeat 3 35 0 1 1312 847 58 20 68 chr3 95403890 95404037 -64195746 + BC1_Mm scRNA scRNA 1 140 -12 1 1312 469 254 284 54 chr3 95404024 95404293 -64195490 - MTE2a LTR MaLR -44 335 5 1 1312 351 275 11 0 chr3 95404294 95404385 -64195398 + B3A SINE B2 1 92 -106 1 1312 254 229 42 28 chr3 95404429 95404501 -64195282 + B1_Mur1 SINE Alu 69 141 -8 1 1312 1345 79 32 5 chr3 95404533 95404723 -64195060 - B2_Mm2 SINE B2 0 195 1 1 1312 874 51 0 0 chr3 95404730 95404847 -64194936 - B1_Mm SINE Alu 0 147 31 1 1312 598 185 394 7 chr3 95404920 95405075 -64194708 - B3 SINE B2 0 216 2 1 1312 499 254 36 29 chr3 95405157 95405295 -64194488 - ID_B1 SINE B4 -4 220 82 1 1312 549 244 79 97 chr3 95405609 95405836 -64193947 - ID_B1 SINE B4 0 224 2 1 1312 566 224 8 67 chr3 95405947 95406081 -64193702 - B1_Mm SINE Alu -9 138 13 1 1312 314 304 71 36 chr3 95405974 95406114 -64193669 - B4 SINE B4 -82 210 66 1 1312 766 86 0 0 chr3 95406128 95406233 -64193550 - B1_Mm SINE Alu -10 137 33 1 1312 237 312 0 0 chr3 95406381 95406445 -64193338 + B1F1 SINE Alu 3 66 -83 1 1312 411 276 206 33 chr3 95407000 95407180 -64192603 + ID_B1 SINE B4 1 211 -13 1 1312 240 294 191 0 chr3 95407841 95407909 -64191874 - PB1D9 SINE Alu -38 82 2 1 1312 646 262 70 11 chr3 95408176 95408361 -64191422 + ID_B1 SINE B4 1 196 -28 1 1312 463 136 12 0 chr3 95408390 95408471 -64191312 + B1_Mur4 SINE Alu 1 82 -68 1 1312 570 223 8 8 chr3 95408499 95408630 -64191153 + B1F SINE Alu 19 149 0 1 1312 976 195 69 20 chr3 95408660 95408864 -64190919 + B3 SINE B2 2 215 -1 1 1312 830 230 91 0 chr3 95409145 95409332 -64190451 + B3 SINE B2 1 204 -12 1 1312 463 183 158 0 chr3 95409352 95409472 -64190311 - B1_Mus2 SINE Alu 0 147 9 1 1312 279 0 0 0 chr3 95409493 95409524 -64190259 + (A)n Simple_repeat Simple_repeat 1 31 0 1 1312 1240 87 29 0 chr3 95409531 95409703 -64190080 + B2_Mm2 SINE B2 5 181 -14 1 1312 442 277 31 0 chr3 95409831 95409961 -64189822 - ID_B1 SINE B4 -12 212 79 1 1312 317 188 48 48 chr3 95410159 95410243 -64189540 - RSINE1 SINE B4 -44 121 38 1 1312 1418 77 38 0 chr3 95410377 95410560 -64189223 + B2_Mm2 SINE B2 2 191 -4 1 1312 330 196 0 0 chr3 95411108 95411164 -64188619 + RSINE1 SINE B4 69 124 -41 1 1312 189 0 0 0 chr3 95411202 95411223 -64188560 + (A)n Simple_repeat Simple_repeat 1 21 0 1 1312 654 237 22 0 chr3 95411377 95411516 -64188267 + RSINE1 SINE B4 3 144 -21 1 1312 248 284 13 39 chr3 95411586 95411663 -64188120 + ID4 SINE ID 2 76 -7 1 1312 1015 230 24 14 chr3 95412027 95412239 -64187544 + B3 SINE B2 2 215 -1 1 1312 469 101 0 0 chr3 95412315 95412384 -64187399 + B1_Mur2 SINE Alu 68 136 -13 1 1312 180 0 0 0 chr3 95412416 95412436 -64187347 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 1 1312 753 156 0 23 chr3 95412772 95412903 -64186880 - B1_Mus2 SINE Alu -19 128 1 1 1312 557 208 83 0 chr3 95412916 95413036 -64186747 - B1_Mur2 SINE Alu -17 132 3 1 1312 486 266 39 0 chr3 95413879 95414007 -64185776 - ID_B1 SINE B4 0 224 92 1 1312 259 321 52 35 chr3 95414033 95414149 -64185634 - PB1D9 SINE Alu 0 120 3 1 1312 601 209 132 0 chr3 95414189 95414318 -64185465 - B1_Mur1 SINE Alu -1 148 3 1 1312 246 62 0 0 chr3 95414327 95414359 -64185424 + (CTTA)n Simple_repeat Simple_repeat 3 34 0 1 1312 216 0 0 0 chr3 95414362 95414386 -64185397 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1 1312 725 295 24 5 chr3 95414386 95414594 -64185189 - ID_B1 SINE B4 -11 213 2 1 1312 354 302 92 26 chr3 95414626 95414779 -64185004 - RSINE1 SINE B4 0 165 3 1 1312 359 269 0 0 chr3 95414843 95414936 -64184847 + PB1D10 SINE Alu 25 117 0 1 1312 24 32 0 0 chr3 95414936 95414967 -64184816 + AT_rich Low_complexity Low_complexity 1 31 0 1 1312 1080 102 60 6 chr3 95415002 95415169 -64184614 + B2_Mm1a SINE B2 4 179 -14 1 1312 1117 96 0 0 chr3 95415176 95415322 -64184461 - B1_Mus2 SINE Alu 0 147 2 1 1312 299 312 21 31 chr3 95415352 95415448 -64184335 + B3A SINE B2 46 140 -58 1 1312 453 116 0 0 chr3 95415457 95415526 -64184257 + (TG)n Simple_repeat Simple_repeat 1 69 0 1 1312 276 252 53 0 chr3 95415699 95415788 -64183995 - L1M4b LINE L1 -403 6628 6533 1 1312 285 182 0 0 chr3 95415887 95415942 -64183841 + T-rich Low_complexity Low_complexity 1 55 0 1 1312 1216 61 0 0 chr3 95415942 95416089 -64183694 - B1_Mm SINE Alu 0 147 1 1 1312 395 48 0 0 chr3 95416090 95416153 -64183630 - B2_Mm1a SINE B2 -4 189 127 1 1312 216 0 0 0 chr3 95416190 95416214 -64183569 + (ATTG)n Simple_repeat Simple_repeat 2 25 0 1 1312 1128 96 0 0 chr3 95416215 95416372 -64183411 - B2_Mm2 SINE B2 -37 158 2 1 1312 508 196 10 10 chr3 95416372 95416469 -64183314 - RSINE1 SINE B4 -67 98 2 1 1312 513 175 21 0 chr3 95416520 95416617 -64183166 + PB1D9 SINE Alu 2 100 -20 1 1312 223 190 0 23 chr3 95416617 95416660 -64183123 + GA-rich Low_complexity Low_complexity 3 44 0 1 1312 314 187 0 26 chr3 95416661 95416738 -64183045 + A-rich Low_complexity Low_complexity 1 75 0 1 1312 286 248 75 19 chr3 95416783 95416890 -64182893 - L1M4b LINE L1 -5143 2191 2079 1 1312 27 0 0 0 chr3 95416984 95417011 -64182772 + AT_rich Low_complexity Low_complexity 1 27 0 1 1312 333 293 137 8 chr3 95417131 95417248 -64182535 - ID_B1 SINE B4 -11 213 82 1 1312 1117 43 7 7 chr3 95417339 95417480 -64182303 - B1_Mus1 SINE Alu -7 141 1 1 1312 21 36 0 0 chr3 95417573 95417601 -64182182 + AT_rich Low_complexity Low_complexity 1 28 0 1 1312 315 0 0 0 chr3 95417610 95417645 -64182138 + (TG)n Simple_repeat Simple_repeat 2 36 0 1 1312 629 238 66 34 chr3 95417761 95418018 -64181765 - MTEb LTR MaLR -55 324 40 1 1312 621 237 45 13 chr3 95418049 95418203 -64181580 - RSINE1 SINE B4 -1 164 6 1 1312 381 340 55 14 chr3 95418219 95418365 -64181418 - RSINE1 SINE B4 -11 154 3 1 1312 1103 64 45 0 chr3 95418438 95418595 -64181188 - B2_Mm2 SINE B2 -4 191 28 1 1312 581 245 205 0 chr3 95418603 95418754 -64181029 - B3 SINE B2 -31 185 4 1 1312 565 288 9 100 chr3 95418782 95419013 -64180770 - ID_B1 SINE B4 0 224 15 1 1312 234 0 0 0 chr3 95419101 95419127 -64180656 + (T)n Simple_repeat Simple_repeat 1 26 0 1 1312 227 130 0 18 chr3 95419182 95419237 -64180546 + (TTTTTG)n Simple_repeat Simple_repeat 2 55 0 1 1312 1244 41 0 7 chr3 95419450 95419598 -64180185 + B1_Mus2 SINE Alu 1 147 0 1 1312 242 185 12 36 chr3 95419604 95419688 -64180095 + GA-rich Low_complexity Low_complexity 3 84 0 1 1312 262 241 169 0 chr3 95419800 95419883 -64179900 + B1F SINE Alu 46 142 -7 1 1312 225 270 156 39 chr3 95420061 95420215 -64179568 - L1M4b LINE L1 -6398 936 765 1 1313 1010 84 0 0 chr3 95420477 95420619 -64179164 + B1_Mus1 SINE Alu 7 148 0 1 1313 1239 116 16 6 chr3 95420714 95420896 -64178887 + B2_Mm2 SINE B2 3 186 -9 1 1313 1157 48 14 0 chr3 95423188 95423334 -64176449 - B1_Mus1 SINE Alu 0 148 1 1 1313 292 323 93 10 chr3 95423713 95423810 -64175973 - RSINE1 SINE B4 -57 108 4 1 1313 644 241 57 6 chr3 95423943 95424102 -64175681 - B3 SINE B2 -8 208 42 1 1313 239 314 11 23 chr3 95424338 95424426 -64175357 - B4 SINE B4 -190 102 16 1 1313 361 246 0 0 chr3 95424365 95424430 -64175353 - ID4 SINE ID -7 76 12 1 1313 839 45 0 0 chr3 95424971 95425082 -64174701 - B1_Mm SINE Alu 0 147 37 1 1313 1993 107 12 15 chr3 95425080 95425404 -64174379 - RLTR31A_Mm LTR ERVK -261 323 1 1 1313 448 135 143 67 chr3 95425455 95425574 -64174209 + B1_Mur4 SINE Alu 23 150 0 1 1313 320 274 158 0 chr3 95425690 95425785 -64173998 - ID_B1 SINE B4 0 224 115 1 1313 279 333 45 18 chr3 95425706 95425816 -64173967 - B1F SINE Alu -36 113 1 1 1313 1011 124 12 0 chr3 95425885 95426046 -64173737 + B2_Mm1t SINE B2 18 180 -13 1 1313 241 191 0 21 chr3 95426111 95426159 -64173624 + B2_Mm2 SINE B2 47 93 -102 1 1313 543 198 0 38 chr3 95426824 95426929 -64172854 + B1_Mur4 SINE Alu 31 131 -19 1 1313 492 48 0 0 chr3 95426937 95427000 -64172783 + (GGA)n Simple_repeat Simple_repeat 2 64 0 1 1313 306 287 59 0 chr3 95427126 95427227 -64172556 - PB1D9 SINE Alu -7 113 7 1 1313 1695 156 37 43 chr3 95427353 95427718 -64172065 + RMER17C LTR ERVK 1 357 -53 1 1313 1803 146 11 142 chr3 95427718 95427994 -64171789 + RMER17C LTR ERVK 1 226 -184 1 1313 288 0 0 0 chr3 95427994 95428026 -64171757 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 1 1313 981 48 87 0 chr3 95428026 95428152 -64171631 - B1_Mus2 SINE Alu -10 137 1 1 1313 1803 146 11 142 chr3 95428152 95428346 -64171437 + RMER17C LTR ERVK 227 409 -1 1 1313 1695 155 37 44 chr3 95428346 95428392 -64171391 + RMER17C LTR ERVK 358 402 -8 1 1313 583 165 180 8 chr3 95429797 95429925 -64169858 + B1_Mur4 SINE Alu 1 150 0 1 1313 456 209 149 36 chr3 95430323 95430517 -64169266 + B3 SINE B2 1 216 0 1 1313 447 313 26 0 chr3 95431129 95431244 -64168539 + B1F1 SINE Alu 1 118 -31 1 1313 377 281 149 14 chr3 95431244 95431385 -64168398 + B3A SINE B2 3 162 -36 1 1313 735 134 104 7 chr3 95431439 95431574 -64168209 + B1_Mur2 SINE Alu 2 149 0 1 1313 236 289 95 66 chr3 95433253 95433390 -64166393 + MIRc SINE MIR 3 143 -125 1 1313 31 0 0 0 chr3 95434375 95434406 -64165377 + AT_rich Low_complexity Low_complexity 1 31 0 1 1313 368 286 0 37 chr3 95434564 95434673 -64165110 + PB1 SINE Alu 21 125 -2 1 1313 206 200 36 0 chr3 95435292 95435347 -64164436 + (TTTG)n Simple_repeat Simple_repeat 4 60 0 1 1313 243 189 19 0 chr3 95436771 95436824 -64162959 + ID_B1 SINE B4 118 171 -53 1 1313 1139 82 0 0 chr3 95437351 95437497 -64162286 + B1_Mm SINE Alu 2 147 0 1 1313 245 268 59 40 chr3 95437637 95437738 -64162045 + RSINE1 SINE B4 2 104 -61 1 1313 676 207 7 21 chr3 95437797 95437940 -64161843 + B1_Mur1 SINE Alu 7 147 -2 1 1313 311 221 158 0 chr3 95437943 95438038 -64161745 + B1F1 SINE Alu 31 140 -9 1 1313 244 250 102 0 chr3 95438131 95438219 -64161564 - PB1D10 SINE Alu 0 117 21 1 1313 227 218 42 94 chr3 95438419 95438434 -64161349 + MT2B2 LTR ERVL 151 160 -424 1 1313 410 206 54 0 chr3 95438434 95438526 -64161257 + B1F1 SINE Alu 1 97 -52 1 1313 330 296 0 0 chr3 95438558 95438629 -64161154 + ID_B1 SINE B4 90 160 -64 1 1313 217 219 0 0 chr3 95438948 95438989 -64160794 - MIRb SINE MIR -13 255 215 1 1313 433 216 0 119 chr3 95439208 95439334 -64160449 + B3 SINE B2 96 206 -10 1 1313 417 243 48 0 chr3 95439347 95439450 -64160333 + PB1D10 SINE Alu 4 111 -6 1 1313 356 226 63 45 chr3 95440129 95440240 -64159543 - B1F2 SINE Alu -35 114 2 1 1313 263 279 0 0 chr3 95440325 95440386 -64159397 - B4A SINE B4 0 292 232 1 1313 221 270 32 0 chr3 95440387 95440450 -64159333 - B4A SINE B4 -183 109 45 1 1313 466 269 29 15 chr3 95440507 95440643 -64159140 - B3 SINE B2 -7 209 72 1 1313 456 304 0 36 chr3 95440624 95440764 -64159019 - RSINE1 SINE B4 -21 144 10 1 1313 351 316 0 0 chr3 95440981 95441057 -64158726 + ID4 SINE ID 2 77 -6 1 1313 513 322 92 33 chr3 95441112 95441385 -64158398 + B4A SINE B4 2 290 -2 1 1313 305 265 51 0 chr3 95441835 95441933 -64157850 - PB1D7 SINE Alu -17 103 1 1 1313 215 236 89 18 chr3 95441963 95442019 -64157764 + ID4_ SINE ID 3 62 -21 1 1313 326 246 149 0 chr3 95442331 95442445 -64157338 + B1F1 SINE Alu 12 142 -7 1 1313 574 253 58 17 chr3 95442504 95442677 -64157106 + B3A SINE B2 1 180 -18 1 1313 641 151 126 8 chr3 95442720 95442847 -64156936 + B1_Mus2 SINE Alu 6 147 0 1 1313 566 273 123 5 chr3 95442891 95443086 -64156697 + ID_B1 SINE B4 6 223 -1 1 1313 356 280 0 11 chr3 95443117 95443211 -64156572 + PB1D10 SINE Alu 3 95 -22 1 1313 392 135 78 6 chr3 95443379 95443467 -64156316 + B1_Mur4 SINE Alu 7 143 -7 1 1313 1228 51 77 27 chr3 95443679 95443862 -64155921 + B2_Mm2 SINE B2 2 193 -2 1 1313 575 119 49 108 chr3 95444000 95444171 -64155612 + B1_Mus2 SINE Alu 3 148 0 1 1313 283 222 49 23 chr3 95444249 95444336 -64155447 + RSINE1 SINE B4 78 146 -19 1 1313 450 0 0 0 chr3 95444349 95444399 -64155384 + (CA)n Simple_repeat Simple_repeat 1 50 0 1 1313 444 269 0 66 chr3 95444426 95444622 -64155161 + ID_B1 SINE B4 7 218 -6 1 1313 999 72 65 0 chr3 95444622 95444761 -64155022 + B1_Mus1 SINE Alu 1 148 0 1 1313 486 0 0 0 chr3 95444944 95444998 -64154785 + (GA)n Simple_repeat Simple_repeat 1 54 0 1 1313 768 267 36 5 chr3 95445210 95445406 -64154377 - B3 SINE B2 -10 206 5 1 1313 237 327 137 10 chr3 95445706 95445808 -64153975 + B1F SINE Alu 1 115 -34 1 1313 234 236 36 0 chr3 95445969 95446024 -64153759 - L2b LINE L2 -6 3369 3313 1 1313 330 164 28 69 chr3 95446170 95446242 -64153541 - ID4_ SINE ID -13 70 2 1 1313 1135 108 6 0 chr3 95446315 95446481 -64153302 + B2_Mm1t SINE B2 1 167 -26 1 1313 343 75 333 27 chr3 95446522 95446630 -64153153 + B2_Mm2 SINE B2 47 187 -8 1 1313 459 124 286 0 chr3 95446661 95446766 -64153017 + B1_Mus1 SINE Alu 1 135 -13 1 1313 1123 75 0 0 chr3 95446811 95446958 -64152825 + B1_Mus2 SINE Alu 1 147 0 1 1313 223 256 109 36 chr3 95447559 95447697 -64152086 - ID_B1 SINE B4 0 224 77 1 1313 543 196 136 45 chr3 95447761 95447916 -64151867 + B3 SINE B2 40 208 -8 1 1313 1138 41 14 0 chr3 95448171 95448316 -64151467 - B1_Mus2 SINE Alu 0 147 1 1 1313 400 269 48 0 chr3 95448346 95448450 -64151333 - ID_B1 SINE B4 0 224 116 1 1313 222 304 74 74 chr3 95448815 95448856 -64150927 + B1F SINE Alu 28 147 -1 1 1313 339 241 38 0 chr3 95448856 95448935 -64150848 + ID_B1 SINE B4 143 224 0 1 1313 1552 69 13 13 chr3 95448938 95449173 -64150610 + L1_Mus3 LINE L1 6404 6638 0 1 1313 1141 74 0 0 chr3 95449656 95449804 -64149979 + B1_Mus1 SINE Alu 1 148 0 1 1313 364 202 37 28 chr3 95449816 95449923 -64149860 + Lx8 LINE L1 7127 7234 -239 1 1313 686 174 202 6 chr3 95449987 95450155 -64149628 + B3 SINE B2 1 201 -15 1 1313 243 307 22 22 chr3 95450167 95450257 -64149526 + RMER1C Other Other 1233 1322 -20 1 1313 408 220 77 0 chr3 95450283 95450374 -64149409 + B1_Mur1 SINE Alu 11 108 -41 1 1313 306 0 0 0 chr3 95450663 95450697 -64149086 + (TTTA)n Simple_repeat Simple_repeat 4 37 0 1 1313 201 74 0 0 chr3 95450699 95450726 -64149057 + (T)n Simple_repeat Simple_repeat 1 27 0 1 1313 1088 49 28 7 chr3 95450726 95450869 -64148914 - B1_Mm SINE Alu 0 147 2 1 1313 318 216 27 0 chr3 95450886 95450960 -64148823 + ID_B1 SINE B4 141 216 -8 1 1313 1191 127 26 0 chr3 95451101 95451290 -64148493 + B2_Mm2 SINE B2 1 194 -1 1 1313 469 243 206 17 chr3 95451331 95451511 -64148272 + B3 SINE B2 1 214 -2 1 1313 243 195 0 0 chr3 95451600 95451641 -64148142 - B1_Mus1 SINE Alu -100 48 8 1 1313 210 37 0 0 chr3 95451681 95451708 -64148075 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 1313 974 58 0 98 chr3 95451708 95451824 -64147959 - B1_Mm SINE Alu -8 139 35 1 1313 1337 82 5 20 chr3 95451824 95452022 -64147761 + B2_Mm2 SINE B2 1 195 0 1 1313 974 58 0 98 chr3 95452022 95452058 -64147725 - B1_Mm SINE Alu -113 34 2 1 1313 432 290 79 21 chr3 95452122 95452312 -64147471 - Lx8 LINE L1 -492 6981 6781 1 1313 266 244 71 47 chr3 95452705 95452851 -64146932 + L1_Rod LINE L1 5606 5834 -334 1 1313 859 9 0 0 chr3 95452998 95453104 -64146679 + B1_Mus1 SINE Alu 31 136 -12 1 1313 458 17 17 0 chr3 95453104 95453163 -64146620 + (CAAAA)n Simple_repeat Simple_repeat 4 63 0 1 1313 835 222 30 65 chr3 95453248 95453479 -64146304 - ID_B1 SINE B4 -1 223 1 1 1313 290 279 35 11 chr3 95453597 95453684 -64146099 - PB1D10 SINE Alu 0 117 29 1 1313 310 261 97 11 chr3 95453834 95453927 -64145856 - B3A SINE B2 -97 101 1 1 1313 1035 102 83 28 chr3 95453947 95454128 -64145655 + B2_Mm1t SINE B2 2 192 -1 1 1313 551 242 40 7 chr3 95454151 95454301 -64145482 - RSINE1 SINE B4 -1 164 10 1 1313 243 324 28 47 chr3 95454364 95454471 -64145312 + ID_B1 SINE B4 104 208 -16 1 1313 259 354 0 0 chr3 95454788 95454867 -64144916 + AluG_3 SINE Alu 140 218 -93 1 1313 272 338 0 36 chr3 95454941 95455024 -64144759 + ID4 SINE ID 2 81 -2 1 1313 266 308 43 32 chr3 95455024 95455035 -64144748 + ID_B1 SINE B4 2 96 -128 1 1313 301 271 203 8 chr3 95455090 95455213 -64144570 + B1F SINE Alu 3 149 0 1 1313 573 265 24 12 chr3 95455429 95455593 -64144190 - B3A SINE B2 -32 166 1 1 1313 296 284 68 17 chr3 95455615 95455733 -64144050 - PB1 SINE Alu 0 127 4 1 1313 262 257 157 0 chr3 95455877 95455947 -64143836 + PB1D10 SINE Alu 37 117 0 1 1313 597 225 43 0 chr3 95456085 95456223 -64143560 + B1F1 SINE Alu 1 144 -5 1 1313 677 235 104 0 chr3 95456386 95456569 -64143214 + B3 SINE B2 2 203 -13 1 1313 183 204 0 0 chr3 95456569 95456613 -64143170 + (CA)n Simple_repeat Simple_repeat 1 44 0 1 1313 663 163 13 52 chr3 95457052 95457207 -64142576 + B1_Mur4 SINE Alu 2 150 0 1 1313 950 99 53 0 chr3 95457212 95457363 -64142420 - B2_Mm2 SINE B2 -1 194 36 1 1313 782 153 22 7 chr3 95458098 95458236 -64141547 + B1_Mus2 SINE Alu 1 140 -7 1 1313 224 156 0 22 chr3 95458241 95458287 -64141496 + (CAAA)n Simple_repeat Simple_repeat 2 46 0 1 1313 237 342 14 0 chr3 95458293 95458366 -64141417 + ID_B1 SINE B4 82 155 -69 1 1313 1127 69 0 0 chr3 95458369 95458514 -64141269 + B1_Mus2 SINE Alu 3 147 0 1 1313 259 272 35 69 chr3 95458563 95458650 -64141133 + RSINE1 SINE B4 38 121 -44 1 1313 239 280 0 0 chr3 95458697 95458747 -64141036 + ID_B1 SINE B4 169 218 -6 1 1313 23 0 0 0 chr3 95458935 95458958 -64140825 + AT_rich Low_complexity Low_complexity 1 23 0 1 1313 397 315 88 39 chr3 95458995 95459200 -64140583 - ID_B1 SINE B4 -8 216 2 1 1313 419 191 10 69 chr3 95459502 95459603 -64140180 - ID_B1 SINE B4 0 224 130 1 1313 394 243 83 56 chr3 95459603 95459646 -64140137 - B1F SINE Alu 0 149 2 1 1313 182 37 37 0 chr3 95459653 95459680 -64140103 + (TTTTTG)n Simple_repeat Simple_repeat 1 28 0 1 1313 435 236 0 11 chr3 95459970 95460064 -64139719 + ID_B1 SINE B4 125 217 -7 1 1313 217 189 55 36 chr3 95460018 95460073 -64139710 + PB1D9 SINE Alu 65 120 0 1 1313 390 227 35 26 chr3 95460073 95460186 -64139597 + B3A SINE B2 2 115 -83 1 1313 378 0 0 0 chr3 95460396 95460438 -64139345 + (TA)n Simple_repeat Simple_repeat 2 43 0 1 1313 941 170 0 0 chr3 95460639 95460786 -64138997 + B1_Mur4 SINE Alu 4 150 0 1 1313 251 261 77 0 chr3 95460975 95461040 -64138743 - ID SINE ID -151 73 4 1 1313 297 0 0 0 chr3 95461052 95461085 -64138698 + (TCTA)n Simple_repeat Simple_repeat 2 34 0 1 1313 259 203 17 17 chr3 95461087 95461147 -64138636 - B1_Mur1 SINE Alu -9 140 81 1 1313 1376 149 53 16 chr3 95461147 95461392 -64138391 - MTC LTR MaLR 0 421 168 1 1313 373 222 12 0 chr3 95461449 95461530 -64138253 - ID SINE ID -140 84 3 1 1313 247 286 35 23 chr3 95461534 95461620 -64138163 - PB1D10 SINE Alu -1 116 30 1 1313 296 328 8 31 chr3 95461719 95461848 -64137935 - RSINE1 SINE B4 -38 127 2 1 1313 1065 62 14 0 chr3 95461891 95462036 -64137747 + B1_Mus1 SINE Alu 2 148 0 1 1313 248 235 88 0 chr3 95462329 95462397 -64137386 + B1F SINE Alu 40 113 -36 1 1313 25 99 0 0 chr3 95462894 95462975 -64136808 + GC_rich Low_complexity Low_complexity 1 81 0 1 1313 25 0 0 0 chr3 95463414 95463439 -64136344 + GC_rich Low_complexity Low_complexity 1 25 0 1 1313 888 111 27 34 chr3 95467654 95467803 -64131980 - B1_Mus1 SINE Alu 0 148 1 1 1313 235 246 100 14 chr3 95468128 95468198 -64131585 + B1F SINE Alu 13 88 -61 1 1313 1110 62 7 0 chr3 95468793 95468939 -64130844 - B1_Mm SINE Alu 0 147 1 1 1313 252 0 0 0 chr3 95469200 95469228 -64130555 + (CA)n Simple_repeat Simple_repeat 2 29 0 1 1313 303 96 0 0 chr3 95469738 95469790 -64129993 + (T)n Simple_repeat Simple_repeat 1 52 0 1 1313 1237 0 14 0 chr3 95469791 95469936 -64129847 - B1_Mus2 SINE Alu 0 147 1 1 1313 1077 84 35 24 chr3 95470390 95470560 -64129223 - B2_Mm2 SINE B2 -23 172 1 1 1313 263 350 48 0 chr3 95470579 95470682 -64129101 - PB1D10 SINE Alu -9 108 1 1 1313 321 333 0 38 chr3 95470596 95470702 -64129081 - ID_B1 SINE B4 -57 167 66 1 1313 218 324 54 54 chr3 95470728 95470839 -64128944 - B1F2 SINE Alu 0 149 39 1 1313 482 205 128 24 chr3 95470910 95471035 -64128748 - B1_Mur2 SINE Alu -7 142 5 1 1313 333 200 79 214 chr3 95471046 95471100 -64128683 - B1_Mur1 SINE Alu -7 142 102 1 1313 976 77 35 0 chr3 95471100 95471243 -64128540 + B1_Mus1 SINE Alu 1 148 0 1 1313 333 200 79 214 chr3 95471243 95471328 -64128455 - B1_Mur1 SINE Alu -48 101 22 1 1313 284 283 65 19 chr3 95471405 95471513 -64128270 - B3A SINE B2 -84 114 2 1 1313 243 345 26 60 chr3 95471518 95471669 -64128114 + Tigger5 DNA MER2_type 91 236 -2170 1 1313 432 0 0 0 chr3 95472221 95472269 -64127514 + (TG)n Simple_repeat Simple_repeat 2 49 0 1 1313 782 42 242 8 chr3 95472379 95472499 -64127284 - B1_Mus1 SINE Alu 0 148 1 1 1313 327 298 10 21 chr3 95472532 95472628 -64127155 - B1F SINE Alu -52 97 3 1 1313 310 284 5 21 chr3 95472913 95473013 -64126770 + B1F SINE Alu 18 120 0 1 1313 414 53 0 0 chr3 95473136 95473193 -64126590 + (TG)n Simple_repeat Simple_repeat 1 57 0 1 1313 442 183 20 0 chr3 95473442 95473542 -64126241 + PB1D9 SINE Alu 20 120 0 1 1313 493 157 386 0 chr3 95473548 95473701 -64126082 + B3 SINE B2 2 213 -3 1 1313 554 277 14 92 chr3 95473710 95473751 -64126032 + B3A SINE B2 1 35 -163 1 1313 1093 71 0 0 chr3 95473751 95473891 -64125892 + B1_Mus1 SINE Alu 2 141 -7 1 1313 207 0 0 0 chr3 95473891 95473914 -64125869 + (CAA)n Simple_repeat Simple_repeat 2 24 0 1 1313 554 277 14 92 chr3 95473914 95474078 -64125705 + B3A SINE B2 36 190 -8 1 1313 1988 53 11 0 chr3 95474164 95474426 -64125357 + L1Md_F2 LINE L1 6318 6582 0 1 1313 1104 116 6 11 chr3 95474436 95474610 -64125173 + B2_Mm2 SINE B2 9 181 -14 1 1313 315 116 43 0 chr3 95474840 95474909 -64124874 - RMER17C LTR ERVK -137 273 202 1 1313 241 231 15 44 chr3 95474998 95475066 -64124717 - ID_B1 SINE B4 -66 158 93 1 1313 848 112 30 0 chr3 95475106 95475240 -64124543 - B1_Mur4 SINE Alu 0 150 13 1 1313 459 220 69 90 chr3 95475111 95475256 -64124527 - B4 SINE B4 -71 221 80 1 1313 380 249 63 111 chr3 95475152 95475342 -64124441 - MT2B LTR ERVL -345 256 76 1 1313 551 205 113 15 chr3 95475680 95475850 -64123933 + B3 SINE B2 1 193 0 1 1313 842 104 37 7 chr3 95475902 95476038 -64123745 - B2_Mm2 SINE B2 -23 172 33 1 1313 599 116 26 35 chr3 95476034 95476150 -64123633 + B1_Mur3 SINE Alu 35 149 0 1 1313 404 228 76 56 chr3 95476356 95476500 -64123283 + RSINE1 SINE B4 2 148 -17 1 1313 324 0 0 0 chr3 95476509 95476545 -64123238 + (CA)n Simple_repeat Simple_repeat 2 37 0 1 1313 391 165 75 12 chr3 95478579 95478659 -64121124 - PB1D10 SINE Alu -8 109 25 1 1313 1600 164 148 13 chr3 95478685 95479062 -64120721 - RMER10A LTR ERVL -2 440 13 1 1313 646 284 39 22 chr3 95482014 95482194 -64117589 - ID_B1 SINE B4 -32 192 10 1 1313 675 250 0 0 chr3 95482252 95482396 -64117387 - B1_Mur2 SINE Alu -5 144 1 1 1313 379 299 76 7 chr3 95482396 95482519 -64117264 - RSINE1 SINE B4 -31 134 2 1 1313 828 255 11 16 chr3 95482527 95482718 -64117065 - B3A SINE B2 -5 193 4 1 1313 243 0 0 0 chr3 95482744 95482771 -64117012 + (TTGG)n Simple_repeat Simple_repeat 4 30 0 1 1313 256 102 152 106 chr3 95482785 95482851 -64116932 - PB1D9 SINE Alu -3 117 49 1 1313 297 0 0 0 chr3 95482890 95482923 -64116860 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 1 1313 1084 75 0 7 chr3 95482938 95483077 -64116706 + B1_Mus1 SINE Alu 1 139 -9 1 1313 279 0 0 0 chr3 95483077 95483108 -64116675 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1 1313 829 141 14 7 chr3 95483129 95483272 -64116511 + B1_Mur3 SINE Alu 6 149 0 1 1313 274 154 400 0 chr3 95483301 95483366 -64116417 - B1F1 SINE Alu -41 108 18 1 1313 360 0 0 0 chr3 95486053 95486093 -64113690 + (TG)n Simple_repeat Simple_repeat 2 41 0 1 1313 1054 116 0 0 chr3 95486470 95486616 -64113167 + B1_Mus2 SINE Alu 2 147 0 1 1313 186 43 0 0 chr3 95486616 95486639 -64113144 + (A)n Simple_repeat Simple_repeat 1 23 0 1 1313 375 259 139 0 chr3 95486739 95486847 -64112936 - RSINE1 SINE B4 -28 137 15 1 1313 261 0 0 0 chr3 95487183 95487212 -64112571 + (TGGGGG)n Simple_repeat Simple_repeat 2 30 0 1 1313 539 15 0 14 chr3 95489113 95489182 -64110601 + (TG)n Simple_repeat Simple_repeat 2 69 0 1 1313 601 142 85 77 chr3 95489182 95489312 -64110471 - B1_Mur4 SINE Alu -11 139 9 1 1313 234 114 0 0 chr3 95492173 95492208 -64107575 + MIRc SINE MIR 111 145 -123 1 1313 295 296 54 39 chr3 95492225 95492355 -64107428 + MIR SINE MIR 20 151 -117 1 1313 564 180 72 24 chr3 95492503 95492628 -64107155 - B1_Mur1 SINE Alu -2 147 17 1 1313 242 143 36 167 chr3 95492558 95492642 -64107141 - MT2B LTR ERVL -361 240 168 1 1313 380 263 67 17 chr3 95492760 95492880 -64106903 + B1F SINE Alu 5 130 -19 1 1313 310 264 102 12 chr3 95493335 95493465 -64106318 - B1F2 SINE Alu -1 148 13 1 1313 294 72 0 118 chr3 95493899 95494009 -64105774 + G-rich Low_complexity Low_complexity 5 101 0 1 1313 195 42 0 0 chr3 95494195 95494219 -64105564 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1 1313 647 219 58 0 chr3 95494242 95494379 -64105404 + B1F SINE Alu 3 147 -2 1 1313 278 190 69 0 chr3 95494481 95494539 -64105244 + ID_B1 SINE B4 84 145 -79 1 1313 215 305 81 59 chr3 95494539 95494551 -64105232 + B1_Mur2 SINE Alu 3 73 -76 1 1313 180 0 0 0 chr3 95494551 95494571 -64105212 + (CAGC)n Simple_repeat Simple_repeat 3 22 0 1 1313 215 305 81 59 chr3 95494571 95494636 -64105147 + B1_Mur2 SINE Alu 74 141 -8 1 1313 517 91 148 0 chr3 95494683 95494771 -64105012 + ORR1A4 LTR MaLR 187 287 -42 1 1313 1569 42 0 0 chr3 95494771 95494964 -64104819 + B2_Mm1a SINE B2 1 193 0 1 1313 474 106 0 0 chr3 95494977 95495043 -64104740 + B1_Mus2 SINE Alu 1 66 -81 1 1313 270 0 0 0 chr3 95495043 95495073 -64104710 + (A)n Simple_repeat Simple_repeat 1 30 0 1 1313 383 74 0 0 chr3 95495073 95495127 -64104656 + ORR1A4 LTR MaLR 274 327 -2 1 1313 297 0 0 0 chr3 95495217 95495250 -64104533 + (TG)n Simple_repeat Simple_repeat 1 33 0 1 1313 546 186 53 0 chr3 95495253 95495366 -64104417 + B1_Mus2 SINE Alu 24 142 -5 1 1313 719 219 47 42 chr3 95495410 95495624 -64104159 + B3 SINE B2 2 216 0 1 1313 332 227 0 102 chr3 95495643 95495660 -64104123 + MT2B LTR ERVL 155 251 -350 1 1313 619 110 11 0 chr3 95495660 95495751 -64104032 + B1_Mur4 SINE Alu 8 99 -51 1 1313 2145 90 0 6 chr3 95495817 95496130 -64103653 - L1Md_F2 LINE L1 0 6582 6272 1 1313 249 123 34 34 chr3 95496130 95496189 -64103594 + B1_Mur4 SINE Alu 92 150 0 1 1313 181 83 27 27 chr3 95496193 95496230 -64103553 + (CAAAA)n Simple_repeat Simple_repeat 3 39 0 1 1313 777 227 58 31 chr3 95496259 95496450 -64103333 + B3 SINE B2 1 196 -20 1 1313 1232 84 17 6 chr3 95496449 95496628 -64103155 - B2_Mm2 SINE B2 -8 187 7 1 1313 1103 68 0 7 chr3 95497039 95497187 -64102596 + B1_Mus1 SINE Alu 2 148 0 1 1313 641 273 81 0 chr3 95497208 95497406 -64102377 - B3 SINE B2 -1 215 2 1 1313 234 371 65 19 chr3 95497638 95497745 -64102038 + ID_B1 SINE B4 104 215 -9 1 1313 527 225 205 12 chr3 95498816 95498987 -64100796 - B3 SINE B2 -12 204 1 1 1313 203 340 84 45 chr3 95499239 95499393 -64100390 + MIRc SINE MIR 107 266 -2 1 1313 411 216 68 0 chr3 95499617 95499705 -64100078 - PB1D10 SINE Alu -5 112 19 1 1313 1290 35 17 23 chr3 95500985 95501000 -64098783 - B2_Mm2 SINE B2 -20 175 161 1 1313 195 129 0 0 chr3 95501000 95501031 -64098752 + (TCTA)n Simple_repeat Simple_repeat 4 34 0 2 1313 1290 35 17 23 chr3 95501031 95501189 -64098594 - B2_Mm2 SINE B2 -35 160 3 1 1313 1585 186 121 21 chr3 95501353 95501368 -64098415 + MTD LTR MaLR 2 15 -404 3 1313 207 0 0 0 chr3 95501368 95501391 -64098392 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 4 1313 1585 186 121 21 chr3 95501391 95501755 -64098028 + MTD LTR MaLR 16 419 0 3 1313 2233 254 77 118 chr3 95501755 95502137 -64097646 + MTD-int LTR MaLR 1 335 -923 3 1313 225 0 0 0 chr3 95502137 95502162 -64097621 + (TAAA)n Simple_repeat Simple_repeat 4 28 0 5 1313 2233 254 77 118 chr3 95502162 95502841 -64096942 + MTD-int LTR MaLR 336 1019 -239 3 1313 300 87 0 0 chr3 95503230 95503257 -64096526 + (A)n Simple_repeat Simple_repeat 1 27 0 6 1313 1141 62 21 0 chr3 95503257 95503402 -64096381 + B1_Mus1 SINE Alu 1 148 0 7 1313 300 87 0 0 chr3 95503402 95503420 -64096363 + (A)n Simple_repeat Simple_repeat 1 18 0 8 1313 475 238 143 0 chr3 95503810 95503915 -64095868 - RSINE1 SINE B4 -45 120 1 9 1313 354 246 258 17 chr3 95504827 95504947 -64094836 - B1F SINE Alu 0 149 1 1 1313 677 192 96 0 chr3 95504985 95505131 -64094652 - B3 SINE B2 -17 199 40 1 1313 437 150 280 0 chr3 95505651 95505751 -64094032 - B1_Mur1 SINE Alu 0 149 22 1 1313 226 296 91 91 chr3 95506583 95506791 -64092992 + RLTR42 LTR ERVK 32 239 0 1 1313 1152 64 0 0 chr3 95506794 95506935 -64092848 + B1_Mus1 SINE Alu 2 142 -6 1 1313 291 181 0 0 chr3 95506938 95507010 -64092773 + A-rich Low_complexity Low_complexity 1 72 0 1 1313 619 201 120 18 chr3 95507231 95507398 -64092385 - MTD LTR MaLR 0 419 236 1 1313 275 290 40 70 chr3 95507367 95507467 -64092316 - ID_B1 SINE B4 -24 200 104 1 1313 991 76 0 0 chr3 95507863 95507994 -64091789 - B2_Mm2 SINE B2 -63 132 2 1 1313 660 209 13 27 chr3 95508770 95508947 -64090836 + B3 SINE B2 2 169 -26 1 1313 1570 47 5 0 chr3 95508947 95509137 -64090646 + B2_Mm1a SINE B2 3 193 0 2 1313 1465 64 37 0 chr3 95509147 95509335 -64090448 + B2_Mm2 SINE B2 1 195 0 2 1313 545 247 19 73 chr3 95509335 95509351 -64090432 + B2_Mm2 SINE B2 179 194 -1 1 1313 319 214 64 101 chr3 95509589 95509698 -64090085 - PB1D10 SINE Alu -1 116 12 2 1313 310 68 322 0 chr3 95509698 95509757 -64090026 - RLTR11A LTR ERVK 0 528 451 2 1313 1319 164 61 23 chr3 95509763 95510025 -64089758 + RLTR11A LTR ERVK 257 528 0 2 1313 564 175 142 0 chr3 95510109 95510229 -64089554 + B1F1 SINE Alu 6 142 -7 2 1313 2089 217 68 76 chr3 95510235 95510683 -64089100 + Lx7 LINE L1 6917 7377 -319 2 1313 351 0 0 0 chr3 95510683 95510722 -64089061 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 2 1313 2089 217 68 76 chr3 95510722 95510829 -64088954 + Lx7 LINE L1 7378 7462 -234 2 1313 207 0 0 0 chr3 95510829 95510852 -64088931 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2 1313 1255 35 0 0 chr3 95510852 95510997 -64088786 - B1_Mus1 SINE Alu -3 145 1 2 1313 2089 217 68 76 chr3 95510997 95511203 -64088580 + Lx7 LINE L1 7463 7673 -23 2 1313 496 231 0 0 chr3 95511203 95511294 -64088489 + ID_B1 SINE B4 134 224 0 3 1313 571 263 99 11 chr3 95511299 95511480 -64088303 + B3 SINE B2 2 198 -18 3 1313 378 283 26 26 chr3 95511816 95511932 -64087851 - PB1D9 SINE Alu -1 119 4 3 1313 879 257 26 11 chr3 95511932 95512119 -64087664 - B3 SINE B2 -19 197 8 3 1313 1419 76 16 0 chr3 95512134 95512319 -64087464 - B2_Mm2 SINE B2 -7 188 1 3 1313 347 328 40 99 chr3 95512486 95512709 -64087074 - RodERV21-int LTR ERV1 -1744 3247 3038 3 1313 976 73 88 0 chr3 95512726 95512862 -64086921 + B1_Mus1 SINE Alu 1 148 0 3 1313 309 268 114 6 chr3 95512875 95513033 -64086750 - RodERV21-int LTR ERV1 -3369 4838 4664 3 1313 333 300 41 103 chr3 95513683 95513723 -64086060 - RodERV21-int LTR ERV1 -3114 3977 3945 3 1313 1348 86 21 5 chr3 95513723 95513910 -64085873 + B2_Mm1t SINE B2 1 190 -3 3 1313 333 300 41 103 chr3 95513910 95514256 -64085527 - RodERV21-int LTR ERV1 -3147 3944 3615 3 1313 510 217 16 40 chr3 95514269 95514394 -64085389 - RMER20B LTR ERVK -22 605 484 3 1313 564 206 0 0 chr3 95514401 95514537 -64085246 + (TG)n Simple_repeat Simple_repeat 2 137 0 4 1313 1953 212 97 12 chr3 95514538 95514962 -64084821 - RMER20B LTR ERVK -167 460 1 3 1313 822 240 16 24 chr3 95515099 95515351 -64084432 - RodERV21-int LTR ERV1 -2273 2718 2469 3 1313 293 206 27 93 chr3 95515352 95515389 -64084394 + ORR1B1-int LTR MaLR 615 749 -755 4 1313 436 198 0 111 chr3 95515389 95515497 -64084286 + MT2B LTR ERVL 162 257 -344 4 1313 1019 77 0 0 chr3 95515403 95515533 -64084250 + B1_Mus1 SINE Alu 10 139 -9 4 1313 2404 206 137 22 chr3 95515544 95516346 -64083437 - RodERV21-int LTR ERV1 -2535 2456 1563 3 1313 1413 95 0 5 chr3 95516372 95516563 -64083220 - B2_Mm2 SINE B2 -5 190 1 4 1313 4418 139 82 76 chr3 95516563 95517078 -64082705 - RMER19B LTR ERVK -16 886 328 4 1313 6122 112 82 17 chr3 95517078 95518038 -64081745 - RLTR13D2 LTR ERVK 0 1023 1 4 1313 4418 139 82 76 chr3 95518038 95518403 -64081380 - RMER19B LTR ERVK -575 327 2 4 1313 1896 234 47 58 chr3 95518403 95519017 -64080766 - RodERV21-int LTR ERV1 -3423 1568 962 3 1313 630 0 0 0 chr3 95519017 95519087 -64080696 + (GAGAA)n Simple_repeat Simple_repeat 1 70 0 4 1313 1896 296 192 38 chr3 95519087 95519437 -64080346 - RodERV21-int LTR ERV1 -4030 961 558 3 1313 269 327 13 82 chr3 95519414 95519505 -64080278 - RMER17C-int LTR ERVK -2905 333 117 4 1313 724 210 0 28 chr3 95519505 95519647 -64080136 - RodERV21-int LTR ERV1 -4674 317 180 3 1313 880 169 10 80 chr3 95519955 95520154 -64079629 - B2_Mm2 SINE B2 -10 185 1 4 1313 825 104 34 34 chr3 95520556 95520735 -64079048 + (CATA)n Simple_repeat Simple_repeat 2 180 0 5 1313 222 37 0 0 chr3 95521282 95521309 -64078474 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 5 1313 548 231 0 76 chr3 95521309 95521454 -64078329 - ID_B1 SINE B4 -13 211 78 5 1313 1117 49 27 27 chr3 95521467 95521615 -64078168 - B1_Mus1 SINE Alu 0 148 1 5 1313 395 235 58 19 chr3 95521632 95521736 -64078047 - PB1D7 SINE Alu -8 112 5 5 1313 1320 88 28 0 chr3 95521989 95522171 -64077612 + B2_Mm1t SINE B2 1 187 -6 5 1313 219 69 0 0 chr3 95523100 95523129 -64076654 + (A)n Simple_repeat Simple_repeat 1 29 0 5 1313 948 146 0 0 chr3 95523147 95523325 -64076458 + (CA)n Simple_repeat Simple_repeat 1 178 0 5 1313 318 107 0 0 chr3 95523342 95523398 -64076385 + (TCTCTG)n Simple_repeat Simple_repeat 3 58 0 5 1313 423 0 0 0 chr3 95523398 95523444 -64076339 + (CA)n Simple_repeat Simple_repeat 1 47 0 5 1313 732 204 114 17 chr3 95523667 95523842 -64075941 - MTC LTR MaLR -34 387 196 6 1313 273 119 0 0 chr3 95523842 95523884 -64075899 + (TCCC)n Simple_repeat Simple_repeat 1 42 0 6 1313 1219 92 0 6 chr3 95523884 95524048 -64075735 - B2_Mm2 SINE B2 -31 164 2 6 1313 606 201 55 24 chr3 95524051 95524210 -64075573 - MTC LTR MaLR -210 211 55 6 1313 466 265 19 19 chr3 95524200 95524304 -64075479 - B1_Mur4 SINE Alu -44 106 3 6 1313 328 316 8 34 chr3 95524606 95524681 -64075102 - L1MEg LINE L1 -4153 1931 1856 6 1313 1072 62 20 34 chr3 95524681 95524830 -64074953 - B1_Mus1 SINE Alu 0 148 2 6 1313 328 316 8 34 chr3 95524830 95524872 -64074911 - L1MEg LINE L1 -4229 1855 1818 6 1313 536 275 6 70 chr3 95525063 95525235 -64074548 - B3A SINE B2 -18 180 20 6 1313 249 254 14 56 chr3 95525240 95525311 -64074472 - RMER10A LTR ERVL -363 79 12 6 1313 25 0 0 0 chr3 95525338 95525363 -64074420 + AT_rich Low_complexity Low_complexity 1 25 0 6 1313 273 287 22 44 chr3 95525363 95525454 -64074329 + B4 SINE B4 81 169 -123 6 1313 416 190 25 25 chr3 95525381 95525462 -64074321 + PB1D9 SINE Alu 12 92 -28 7 1313 34 24 0 0 chr3 95525465 95525506 -64074277 + AT_rich Low_complexity Low_complexity 1 41 0 7 1313 277 222 19 0 chr3 95525629 95525683 -64074100 + B4A SINE B4 166 220 -72 6 1313 1053 110 7 0 chr3 95525703 95525848 -64073935 + B1_Mur3 SINE Alu 3 148 -1 7 1313 224 217 0 0 chr3 95525848 95525908 -64073875 + (CAA)n Simple_repeat Simple_repeat 1 60 0 7 1313 446 271 48 16 chr3 95525936 95526060 -64073723 - B3A SINE B2 -69 129 2 7 1313 688 307 5 42 chr3 95526064 95526278 -64073505 - ID_B1 SINE B4 -2 222 17 7 1313 231 106 66 132 chr3 95526585 95526661 -64073122 + MTE2a LTR MaLR 309 379 0 7 1313 249 306 18 18 chr3 95526867 95526967 -64072816 + PB1D10 SINE Alu 5 105 -12 7 1313 246 62 0 0 chr3 95526967 95526999 -64072784 + (TAAA)n Simple_repeat Simple_repeat 1 32 0 7 1313 1353 86 0 16 chr3 95527015 95527205 -64072578 + B2_Mm2 SINE B2 1 187 -8 7 1313 203 250 0 0 chr3 95527253 95527297 -64072486 + CT-rich Low_complexity Low_complexity 2 45 0 8 1313 369 348 36 7 chr3 95527304 95527443 -64072340 - ID_B1 SINE B4 -1 223 81 8 1313 870 171 0 7 chr3 95527496 95527643 -64072140 - B1_Mur3 SINE Alu -1 148 3 8 1313 27 0 0 0 chr3 95527651 95527678 -64072105 + AT_rich Low_complexity Low_complexity 1 27 0 8 1313 366 253 13 0 chr3 95527679 95527754 -64072029 + PB1D9 SINE Alu 3 78 -42 8 1313 402 139 0 0 chr3 95527767 95527839 -64071944 + (A)n Simple_repeat Simple_repeat 1 72 0 8 1313 760 235 42 32 chr3 95527844 95528033 -64071750 + ID_B1 SINE B4 33 223 -1 8 1313 435 245 0 28 chr3 95528093 95528202 -64071581 + PB1 SINE Alu 22 127 0 8 1313 335 125 0 0 chr3 95528503 95528551 -64071232 - HAL1-3A_ME LINE L1 -835 2023 1976 8 1313 1360 228 133 8 chr3 95528575 95528942 -64070841 + MTD LTR MaLR 4 416 -3 8 1313 519 212 79 21 chr3 95528954 95529094 -64070689 - B1F SINE Alu -1 148 1 9 1313 667 150 123 23 chr3 95529227 95529357 -64070426 - B1_Mur3 SINE Alu -1 148 6 9 1313 1724 11 0 0 chr3 95529393 95529581 -64070202 - B2_Mm1a SINE B2 -4 189 2 9 1313 1120 149 66 20 chr3 95529755 95529953 -64069830 + ORR1C2 LTR MaLR 174 380 -4 9 1313 272 198 0 39 chr3 95529967 95530044 -64069739 - L1_Mur3 LINE L1 -422 5875 5802 9 1313 256 239 119 0 chr3 95530056 95530123 -64069660 + B4A SINE B4 1 75 -217 9 1313 600 230 0 0 chr3 95530130 95530291 -64069492 + (TATG)n Simple_repeat Simple_repeat 2 162 0 9 1313 711 273 79 11 chr3 95530291 95530480 -64069303 + B4A SINE B4 87 288 -4 9 1313 909 295 87 14 chr3 95530510 95531100 -64068683 - L1_Mur3 LINE L1 -132 5748 5079 9 1313 403 48 16 16 chr3 95531118 95531181 -64068602 + (TC)n Simple_repeat Simple_repeat 2 64 0 9 1313 606 206 111 0 chr3 95531188 95531314 -64068469 - B1_Mur4 SINE Alu -6 144 5 9 1313 434 216 0 0 chr3 95531314 95531394 -64068389 + B3 SINE B2 133 212 -4 9 1313 853 232 131 0 chr3 95531424 95531622 -64068161 - ID_B1 SINE B4 0 224 1 1 1313 221 324 26 39 chr3 95531779 95531856 -64067927 + ID4_ SINE ID 6 81 -2 1 1313 26 74 0 0 chr3 95532005 95532059 -64067724 + AT_rich Low_complexity Low_complexity 1 54 0 1 1313 337 270 0 39 chr3 95532199 95532276 -64067507 + PB1D10 SINE Alu 23 96 -21 1 1313 246 174 0 0 chr3 95532285 95532331 -64067452 + (CCTA)n Simple_repeat Simple_repeat 1 46 0 1 1313 533 182 146 0 chr3 95532335 95532445 -64067338 - B1_Mur2 SINE Alu -23 126 1 1 1313 500 199 6 171 chr3 95532461 95532619 -64067164 + B1F2 SINE Alu 1 132 -17 1 1313 486 0 0 0 chr3 95532624 95532678 -64067105 + (GAAA)n Simple_repeat Simple_repeat 4 57 0 1 1313 353 294 48 10 chr3 95532678 95532781 -64067002 + PB1D10 SINE Alu 2 108 -9 1 1313 312 283 124 8 chr3 95532862 95532983 -64066800 - MLT1F LTR MaLR -3 545 411 1 1313 689 227 28 0 chr3 95533183 95533324 -64066459 - B1_Mur4 SINE Alu 0 150 6 1 1313 28 29 0 0 chr3 95533529 95533564 -64066219 + AT_rich Low_complexity Low_complexity 1 35 0 1 1313 255 203 62 0 chr3 95533751 95533815 -64065968 - B1_Mus2 SINE Alu 0 147 80 1 1313 861 204 70 0 chr3 95533790 95533962 -64065821 - B3 SINE B2 -30 186 3 1 1313 227 269 0 0 chr3 95533964 95534016 -64065767 + (TCCA)n Simple_repeat Simple_repeat 2 53 0 1 1313 214 333 43 0 chr3 95534018 95534087 -64065696 - B1F SINE Alu -73 76 5 1 1313 372 354 9 0 chr3 95534033 95534146 -64065637 - ID_B1 SINE B4 -84 140 27 1 1313 259 328 0 0 chr3 95534088 95534155 -64065628 - ID4 SINE ID 0 83 17 1 1313 469 283 43 7 chr3 95534191 95534330 -64065453 - B1F SINE Alu -5 144 1 1 1313 907 241 128 58 chr3 95534463 95534806 -64064977 + MTD LTR MaLR 3 369 -50 1 1313 288 0 0 0 chr3 95534829 95534861 -64064922 + (CAA)n Simple_repeat Simple_repeat 2 33 0 1 1313 450 168 172 23 chr3 95535019 95535147 -64064636 - B1_Mm SINE Alu 0 147 1 1 1313 192 77 0 0 chr3 95535278 95535304 -64064479 + (T)n Simple_repeat Simple_repeat 1 26 0 1 1313 1061 122 7 0 chr3 95535305 95535452 -64064331 - B1_Mus1 SINE Alu 0 148 1 1 1313 768 176 49 14 chr3 95535476 95535620 -64064163 - B1_Mur2 SINE Alu 0 149 1 1 1313 244 215 226 60 chr3 95535620 95535788 -64063995 - B3A SINE B2 -2 196 1 1 1313 424 216 59 27 chr3 95535820 95535955 -64063828 - B3 SINE B2 -2 193 66 1 1313 242 140 0 0 chr3 95535990 95536040 -64063743 - B3 SINE B2 0 216 167 1 1313 1193 29 0 0 chr3 95536202 95536338 -64063445 - B1_Mm SINE Alu -11 136 1 1 1313 420 240 148 32 chr3 95537508 95537663 -64062120 + B4A SINE B4 56 228 -64 1 1313 294 339 8 68 chr3 95538857 95538896 -64060887 + ID SINE ID 51 81 -143 1 1313 328 287 47 22 chr3 95538896 95539009 -64060774 + B1F SINE Alu 2 119 -1 1 1313 200 195 0 24 chr3 95539632 95539674 -64060109 + (CGGA)n Simple_repeat Simple_repeat 3 43 0 1 1313 414 121 0 0 chr3 95540299 95540365 -64059418 + (CA)n Simple_repeat Simple_repeat 1 66 0 1 1313 238 271 0 76 chr3 95541162 95541254 -64058529 - B1F SINE Alu 0 149 65 1 1313 519 200 10 10 chr3 95541229 95541338 -64058445 - B1_Mur3 SINE Alu -31 119 2 1 1313 303 229 33 125 chr3 95541233 95541353 -64058430 - MT2B LTR ERVL -337 264 156 1 1313 552 203 50 43 chr3 95542627 95542766 -64057017 - RSINE1 SINE B4 0 165 26 1 1313 292 298 78 31 chr3 95544833 95544961 -64054822 - B1F2 SINE Alu -15 134 1 1 1313 312 317 19 19 chr3 95544866 95544972 -64054811 - ID_B1 SINE B4 -48 176 71 1 1313 342 272 253 0 chr3 95545652 95545814 -64053969 - ID_B1 SINE B4 -17 207 5 1 1313 198 0 0 0 chr3 95547242 95547264 -64052519 + (TG)n Simple_repeat Simple_repeat 2 23 0 1 1313 2306 244 117 95 chr3 95547281 95548465 -64051318 + RMER12 LTR ERVK 5 1213 -109 1 1313 517 302 95 45 chr3 95548624 95548691 -64051092 - B4A SINE B4 -15 277 209 1 1313 650 239 303 17 chr3 95548691 95548985 -64050798 + MTE2b LTR MaLR 1 378 -1 1 1313 517 302 95 45 chr3 95548985 95549181 -64050602 - B4A SINE B4 -84 208 3 1 1313 920 139 14 0 chr3 95549201 95549345 -64050438 + B1_Mus1 SINE Alu 2 147 -1 1 1313 345 207 267 33 chr3 95549391 95549511 -64050272 - B1F1 SINE Alu -1 148 1 1 1313 421 264 9 125 chr3 95549511 95549538 -64050245 - MT2B LTR ERVL -328 256 180 1 1313 534 136 74 0 chr3 95549538 95549619 -64050164 - B1_Mus1 SINE Alu -61 87 1 1 1313 421 264 9 125 chr3 95549619 95549633 -64050150 - MT2B LTR ERVL -257 179 156 1 1313 817 258 39 0 chr3 95550235 95550417 -64049366 + ID_B1 SINE B4 35 223 -1 1 1313 601 242 40 0 chr3 95550669 95550793 -64048990 - B1F2 SINE Alu -19 130 2 1 1313 486 215 0 11 chr3 95550841 95550935 -64048848 + B1F2 SINE Alu 52 144 -5 1 1313 881 172 14 0 chr3 95551137 95551282 -64048501 - B1_Mus2 SINE Alu 0 147 1 1 1314 236 224 0 58 chr3 95551796 95551848 -64047935 - ID_B1 SINE B4 -2 222 174 1 1314 444 287 11 0 chr3 95551803 95551897 -64047886 - PB1D10 SINE Alu -9 108 14 1 1314 412 286 68 0 chr3 95552180 95552313 -64047470 + ID_B1 SINE B4 83 224 0 1 1314 192 77 0 0 chr3 95552832 95552858 -64046925 + (TATG)n Simple_repeat Simple_repeat 1 26 0 1 1314 1153 66 0 0 chr3 95553118 95553255 -64046528 + B1_Mus2 SINE Alu 1 137 -10 1 1314 210 37 0 0 chr3 95553255 95553282 -64046501 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 1314 907 152 27 33 chr3 95553296 95553446 -64046337 + B1_Mur3 SINE Alu 1 149 0 1 1314 531 236 69 23 chr3 95553507 95553637 -64046146 - ID_B1 SINE B4 -8 216 81 1 1314 319 211 0 0 chr3 95555057 95555123 -64044660 - ID4_ SINE ID -62 90 25 1 1314 240 171 0 0 chr3 95555124 95555165 -64044618 + PB1D10 SINE Alu 56 96 -21 1 1314 207 161 0 0 chr3 95555166 95555197 -64044586 + polypurine Low_complexity Low_complexity 4 34 0 1 1314 816 246 23 55 chr3 95555733 95555942 -64043841 + B3 SINE B2 1 203 -13 1 1314 863 214 114 11 chr3 95555942 95556126 -64043657 - B3 SINE B2 -13 203 1 1 1314 227 143 0 0 chr3 95556334 95556376 -64043407 + PB1D10 SINE Alu 76 117 0 1 1314 424 280 19 0 chr3 95557275 95557382 -64042401 - PB1D10 SINE Alu -7 110 2 1 1314 983 52 0 82 chr3 95557433 95557579 -64042204 - B1_Mus2 SINE Alu -12 135 2 1 1314 267 262 24 12 chr3 95557638 95557723 -64042060 - B4 SINE B4 -49 243 158 1 1314 293 292 99 93 chr3 95557781 95557943 -64041840 - RSINE1 SINE B4 0 165 3 1 1314 1225 54 0 0 chr3 95558006 95558153 -64041630 + B1_Mus1 SINE Alu 1 147 -1 1 1314 22 0 0 0 chr3 95559090 95559112 -64040671 + AT_rich Low_complexity Low_complexity 1 22 0 1 1314 192 372 141 5 chr3 95559130 95559322 -64040461 + MIRb SINE MIR 23 240 -28 1 1314 732 119 0 0 chr3 95559363 95559489 -64040294 - B1_Mus1 SINE Alu -22 126 1 1 1314 345 307 6 63 chr3 95559624 95559798 -64039985 - RSINE1 SINE B4 0 165 2 1 1314 796 111 17 0 chr3 95561407 95561524 -64038259 + PB1D9 SINE Alu 2 120 0 1 1314 1207 14 0 7 chr3 95563330 95563469 -64036314 + B1_Mm SINE Alu 1 138 -9 1 1314 186 43 0 0 chr3 95563921 95563944 -64035839 + (TGGGGG)n Simple_repeat Simple_repeat 3 25 0 1 1314 22 0 0 0 chr3 95564416 95564438 -64035345 + AT_rich Low_complexity Low_complexity 1 22 0 1 1314 355 292 47 0 chr3 95566764 95566870 -64032913 - PB1D10 SINE Alu -5 112 2 1 1314 310 100 33 0 chr3 95567454 95567514 -64032269 + (CAAAA)n Simple_repeat Simple_repeat 2 63 0 1 1314 979 241 19 10 chr3 95570888 95571097 -64028686 - B3 SINE B2 -5 211 1 1 1314 368 210 98 105 chr3 95571110 95571243 -64028540 - B1_Mur2 SINE Alu -8 141 10 1 1314 1245 34 0 0 chr3 95571262 95571409 -64028374 - B1_Mus2 SINE Alu 0 147 1 1 1314 621 0 0 0 chr3 95571618 95571687 -64028096 + (TG)n Simple_repeat Simple_repeat 2 70 0 1 1314 390 281 0 27 chr3 95571687 95571804 -64027979 - B3 SINE B2 -82 113 3 1 1314 401 267 9 38 chr3 95571804 95571909 -64027874 - ID_B1 SINE B4 -1 223 122 1 1314 1156 55 7 0 chr3 95571931 95572076 -64027707 - B1_Mus2 SINE Alu 0 147 2 1 1314 224 359 0 0 chr3 95572096 95572160 -64027623 - B1F2 SINE Alu -43 106 43 1 1314 587 282 0 14 chr3 95572222 95572366 -64027417 + B1_Mur1 SINE Alu 1 142 -7 1 1314 296 211 35 0 chr3 95572401 95572458 -64027325 + B3 SINE B2 3 61 -155 1 1314 431 282 62 22 chr3 95572465 95572643 -64027140 - L1MA4 LINE L1 -395 5905 5721 1 1314 782 181 13 46 chr3 95573010 95573161 -64026622 - B1_Mur2 SINE Alu 0 149 4 1 1314 303 271 106 0 chr3 95573179 95573264 -64026519 - PB1D10 SINE Alu -6 111 18 1 1314 565 244 34 0 chr3 95573381 95573500 -64026283 + RSINE1 SINE B4 13 135 -30 1 1314 565 154 9 19 chr3 95573698 95573804 -64025979 - PB1D9 SINE Alu -13 107 3 1 1314 503 205 291 0 chr3 95573861 95573988 -64025795 - RSINE1 SINE B4 0 165 2 1 1314 1242 103 40 6 chr3 95574067 95574242 -64025541 + B2_Mm2 SINE B2 1 181 -14 1 1314 618 188 125 0 chr3 95574302 95574430 -64025353 - B1_Mur3 SINE Alu -5 144 1 1 1314 532 326 32 26 chr3 95575074 95575263 -64024520 - MER20 DNA MER1_type 0 219 30 1 1314 331 311 52 26 chr3 95575616 95575771 -64024012 + MIR3 SINE MIR 49 207 -1 2 1314 21 36 0 0 chr3 95576634 95576662 -64023121 + AT_rich Low_complexity Low_complexity 1 28 0 2 1314 363 268 10 0 chr3 95576781 95576878 -64022905 - PB1D10 SINE Alu 0 117 20 2 1314 319 245 0 117 chr3 95577006 95577117 -64022666 - RSINE1 SINE B4 -33 132 35 2 1314 630 291 55 22 chr3 95577261 95577532 -64022251 - B4A SINE B4 -10 282 3 2 1314 417 186 74 56 chr3 95577542 95577650 -64022133 - PB1D10 SINE Alu -7 110 1 2 1314 306 194 0 0 chr3 95577786 95577848 -64021935 + (TA)n Simple_repeat Simple_repeat 2 63 0 2 1314 361 282 45 22 chr3 95578398 95578532 -64021251 + B3A SINE B2 62 198 0 2 1314 435 68 0 0 chr3 95578715 95578774 -64021009 + (GAAAA)n Simple_repeat Simple_repeat 4 62 0 2 1314 234 0 0 0 chr3 95578774 95578800 -64020983 + (CAG)n Simple_repeat Simple_repeat 1 26 0 2 1314 642 225 148 0 chr3 95579013 95579195 -64020588 - B3 SINE B2 -7 209 1 2 1314 1211 79 96 0 chr3 95579244 95579422 -64020361 + B2_Mm2 SINE B2 1 195 0 2 1314 475 167 92 9 chr3 95579501 95579610 -64020173 + RMER1C Other Other 1224 1341 -1 2 1314 1254 101 56 0 chr3 95579691 95579869 -64019914 - B2_Mm2 SINE B2 -7 188 1 2 1314 617 250 124 5 chr3 95579991 95580176 -64019607 - B3 SINE B2 -4 212 6 2 1314 855 0 0 0 chr3 95580724 95580819 -64018964 + (GA)n Simple_repeat Simple_repeat 2 96 0 2 1314 359 265 39 86 chr3 95580984 95581112 -64018671 - RSINE1 SINE B4 -1 164 43 2 1314 495 261 189 42 chr3 95581174 95581438 -64018345 - L1MC3 LINE L1 -166 7619 7317 2 1314 462 310 25 25 chr3 95581519 95581681 -64018102 - RSINE1 SINE B4 0 165 4 2 1314 449 322 16 0 chr3 95581741 95581862 -64017921 - RSINE1 SINE B4 -35 130 8 2 1314 263 318 0 31 chr3 95581924 95581938 -64017845 + ID_B1 SINE B4 72 134 -90 2 1314 267 294 0 0 chr3 95581938 95581989 -64017794 + B1F2 SINE Alu 3 53 -96 2 1314 673 246 43 49 chr3 95581972 95582156 -64017627 + B3 SINE B2 17 199 -17 2 1314 658 251 73 25 chr3 95582165 95582369 -64017414 + B3 SINE B2 3 216 0 2 1314 687 214 157 0 chr3 95582435 95582613 -64017170 + B3 SINE B2 5 210 -6 2 1314 544 242 83 0 chr3 95582646 95582766 -64017017 + B1_Mus2 SINE Alu 1 130 -17 2 1314 522 83 0 0 chr3 95582800 95582872 -64016911 + (CA)n Simple_repeat Simple_repeat 1 72 0 2 1314 452 297 48 79 chr3 95582911 95583138 -64016645 + B4A SINE B4 7 226 -66 2 1314 362 113 32 0 chr3 95583171 95583233 -64016550 + B3 SINE B2 153 216 0 2 1314 210 333 30 0 chr3 95583727 95583793 -64015990 + RSINE1 SINE B4 91 158 -7 2 1314 3349 38 2 8 chr3 95583837 95584235 -64015548 - MTA_Mm LTR MaLR 0 396 1 2 1314 227 278 0 0 chr3 95584241 95584295 -64015488 + (TATATG)n Simple_repeat Simple_repeat 5 58 0 2 1314 180 0 0 0 chr3 95585121 95585141 -64014642 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 2 1314 348 254 67 30 chr3 95585220 95585354 -64014429 - B1F1 SINE Alu -2 147 9 2 1314 23 33 0 0 chr3 95585596 95585626 -64014157 + AT_rich Low_complexity Low_complexity 1 30 0 2 1314 484 238 9 28 chr3 95585642 95585750 -64014033 - B3A SINE B2 -84 114 9 2 1314 1246 54 101 0 chr3 95586807 95586975 -64012808 + B2_Mm1t SINE B2 2 186 -7 2 1314 257 174 0 61 chr3 95587162 95587211 -64012572 + B1_Mur4 SINE Alu 40 85 -65 2 1314 1117 73 0 0 chr3 95587211 95587348 -64012435 + B1_Mus1 SINE Alu 2 138 -10 2 1314 965 222 39 0 chr3 95587451 95587654 -64012129 + B3 SINE B2 1 211 -5 2 1314 1668 16 0 25 chr3 95587657 95587853 -64011930 + B2_Mm1a SINE B2 2 192 -1 2 1314 277 252 275 0 chr3 95588425 95588528 -64011255 - B1_Mur2 SINE Alu -13 136 9 2 1314 416 288 35 18 chr3 95588562 95588675 -64011108 - RSINE1 SINE B4 -13 152 38 2 1314 189 0 0 0 chr3 95590045 95590066 -64009717 + (T)n Simple_repeat Simple_repeat 1 21 0 2 1314 30 0 0 0 chr3 95590500 95590530 -64009253 + AT_rich Low_complexity Low_complexity 1 30 0 2 1314 654 151 48 40 chr3 95591345 95591469 -64008314 + B1_Mur3 SINE Alu 2 126 -23 2 1314 660 260 107 25 chr3 95591594 95591791 -64007992 - B3 SINE B2 0 216 4 2 1314 519 205 42 17 chr3 95591995 95592114 -64007669 - B1_Mus1 SINE Alu 0 148 27 2 1314 761 210 7 0 chr3 95592148 95592291 -64007492 + B1_Mus1 SINE Alu 5 148 0 2 1314 24 0 0 0 chr3 95592319 95592343 -64007440 + AT_rich Low_complexity Low_complexity 1 24 0 2 1314 548 219 9 9 chr3 95592359 95592474 -64007309 + RSINE1 SINE B4 44 158 -7 2 1314 442 224 287 49 chr3 95592497 95592631 -64007152 + B3 SINE B2 4 165 -51 2 1314 441 0 0 0 chr3 95592631 95592680 -64007103 + (CA)n Simple_repeat Simple_repeat 2 50 0 2 1314 442 224 287 49 chr3 95592680 95592709 -64007074 + B3 SINE B2 166 206 -10 2 1314 1220 35 0 0 chr3 95592713 95592856 -64006927 + B1_Mus1 SINE Alu 1 143 -5 2 1314 312 48 0 0 chr3 95592858 95592900 -64006883 + (TAAA)n Simple_repeat Simple_repeat 4 45 0 2 1314 227 31 31 0 chr3 95593215 95593247 -64006536 + (CAAAA)n Simple_repeat Simple_repeat 2 34 0 2 1314 428 279 10 0 chr3 95593432 95593536 -64006247 + PB1D7 SINE Alu 12 116 -4 2 1314 23 0 0 0 chr3 95593972 95593995 -64005788 + AT_rich Low_complexity Low_complexity 1 23 0 2 1314 287 222 700 0 chr3 95594237 95594360 -64005423 - B3 SINE B2 -7 209 1 2 1314 8707 102 76 15 chr3 95594534 95596163 -64003620 + Lx3A LINE L1 5237 6968 -13 2 1314 198 0 0 0 chr3 95596163 95596185 -64003598 + (TTAA)n Simple_repeat Simple_repeat 1 22 0 2 1314 8707 101 64 14 chr3 95596185 95596197 -64003586 + Lx3A LINE L1 6969 6977 -4 2 1314 366 224 0 0 chr3 95596223 95596308 -64003475 + GA-rich Low_complexity Low_complexity 2 86 0 2 1314 1472 171 76 79 chr3 95597100 95597455 -64002328 + ORR1C2 LTR MaLR 1 354 -30 2 1314 432 178 87 29 chr3 95597452 95597556 -64002227 - B1_Mur1 SINE Alu -8 141 32 2 1314 361 272 24 88 chr3 95597551 95597676 -64002107 - PB1D10 SINE Alu 0 117 1 2 1314 306 0 0 0 chr3 95598026 95598060 -64001723 + (CAG)n Simple_repeat Simple_repeat 1 34 0 2 1314 330 298 8 34 chr3 95598107 95598225 -64001558 + ID_B1 SINE B4 88 202 -22 2 1314 545 256 222 0 chr3 95598538 95598714 -64001069 + B3 SINE B2 1 215 -1 2 1314 586 175 97 32 chr3 95598724 95598848 -64000935 + B1_Mus1 SINE Alu 2 133 -15 2 1314 405 0 0 0 chr3 95598850 95598895 -64000888 + (CA)n Simple_repeat Simple_repeat 1 45 0 2 1314 261 0 0 0 chr3 95598895 95598924 -64000859 + (TGAA)n Simple_repeat Simple_repeat 2 30 0 2 1314 814 179 27 14 chr3 95599142 95599289 -64000494 + B1_Mur3 SINE Alu 1 149 0 2 1314 342 123 0 0 chr3 95599291 95599348 -64000435 + (TAAA)n Simple_repeat Simple_repeat 2 58 0 2 1314 266 269 240 0 chr3 95599508 95599612 -64000171 + RSINE1 SINE B4 2 130 -35 2 1314 307 351 84 29 chr3 95599636 95599909 -63999874 + B4A SINE B4 5 292 0 2 1314 1413 83 5 5 chr3 95599921 95600114 -63999669 + B2_Mm1a SINE B2 1 193 0 2 1314 577 164 44 9 chr3 95600530 95600665 -63999118 + B1_Mur4 SINE Alu 1 140 -10 2 1314 512 244 15 0 chr3 95600667 95600798 -63998985 - U1 snRNA snRNA -23 142 10 2 1314 210 340 0 0 chr3 95600989 95601086 -63998697 + T-rich Low_complexity Low_complexity 1 97 0 2 1314 211 286 0 0 chr3 95600990 95601039 -63998744 + CT-rich Low_complexity Low_complexity 3 51 0 2 1314 1041 64 56 21 chr3 95601090 95601233 -63998550 - B1_Mus1 SINE Alu 0 148 1 2 1314 444 223 60 35 chr3 95601235 95601351 -63998432 - B1_Mur1 SINE Alu -1 148 30 2 1314 189 0 0 0 chr3 95601492 95601513 -63998270 + (T)n Simple_repeat Simple_repeat 1 21 0 2 1314 802 46 0 0 chr3 95601513 95601562 -63998221 - B1_Mus2 SINE Alu 0 147 40 2 1314 286 180 0 16 chr3 95601571 95601621 -63998162 - 4.5SRNA scRNA scRNA -8 86 38 2 1314 1321 93 60 0 chr3 95601621 95601804 -63997979 - B2_Mm2 SINE B2 -1 194 1 2 1314 286 180 0 16 chr3 95601804 95601815 -63997968 - 4.5SRNA scRNA scRNA -57 37 27 2 1314 283 224 53 61 chr3 95601815 95601858 -63997925 - RLTR25B LTR ERVK -588 440 387 2 1314 667 236 103 11 chr3 95601847 95602031 -63997752 - B3 SINE B2 -7 209 9 2 1314 390 204 10 20 chr3 95602115 95602215 -63997568 - PB1D9 SINE Alu -1 119 21 2 1314 390 237 1 0 chr3 95602345 95602434 -63997349 + B3A SINE B2 1 90 -126 2 1314 264 108 0 0 chr3 95602501 95602538 -63997245 + B3A SINE B2 3 39 -159 2 1314 1156 68 0 0 chr3 95602539 95602686 -63997097 + B1_Mus2 SINE Alu 1 147 0 2 1314 26 0 0 0 chr3 95603034 95603060 -63996723 + AT_rich Low_complexity Low_complexity 1 26 0 2 1314 225 123 0 0 chr3 95603060 95603097 -63996686 - B1F SINE Alu -20 129 65 2 1314 462 238 64 64 chr3 95603177 95603334 -63996449 - ID_B1 SINE B4 -4 220 64 2 1314 239 257 26 26 chr3 95603478 95603554 -63996229 - PB1D9 SINE Alu 0 120 45 2 1314 230 180 19 74 chr3 95603720 95603774 -63996009 + ID4_ SINE ID 17 67 -16 2 1314 684 244 110 35 chr3 95603873 95604128 -63995655 + RLTR12B LTR ERVK 47 320 -208 2 1314 367 214 135 0 chr3 95604364 95604453 -63995330 - ID_B1 SINE B4 0 224 124 2 1314 1172 54 0 13 chr3 95604786 95604936 -63994847 + B1_Mus1 SINE Alu 1 148 0 3 1314 398 280 133 0 chr3 95605120 95605263 -63994520 + B3 SINE B2 50 211 -5 2 1314 511 207 110 17 chr3 95605591 95605709 -63994074 + RSINE1 SINE B4 37 165 0 3 1314 538 201 271 7 chr3 95605749 95605904 -63993879 + Lx9 LINE L1 6959 7154 -490 3 1314 824 54 0 0 chr3 95605905 95606016 -63993767 + B1_Mus1 SINE Alu 28 138 -10 3 1314 207 0 0 0 chr3 95606016 95606039 -63993744 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 3 1314 504 361 25 36 chr3 95606039 95606451 -63993332 + Lx9 LINE L1 7011 7441 -203 3 1314 833 133 40 0 chr3 95606461 95606611 -63993172 + ORR1B1 LTR MaLR 5 160 -169 3 1314 1171 69 29 6 chr3 95606612 95606786 -63992997 + B2_Mm1t SINE B2 2 179 -14 3 1314 1008 117 17 45 chr3 95606772 95606951 -63992832 + ORR1B1 LTR MaLR 213 386 -8 3 1314 3395 146 118 47 chr3 95607042 95607313 -63992470 + RMER6A LTR ERVK 1 317 -439 3 1314 207 0 0 0 chr3 95607313 95607336 -63992447 + (CAGAG)n Simple_repeat Simple_repeat 3 25 0 3 1314 3395 146 118 47 chr3 95607336 95607446 -63992337 + RMER6A LTR ERVK 318 441 -315 3 1314 1349 85 0 6 chr3 95607446 95607624 -63992159 + B2_Mm2 SINE B2 1 177 -18 3 1314 3395 146 118 47 chr3 95607624 95607947 -63991836 + RMER6A LTR ERVK 442 756 0 3 1314 830 223 0 11 chr3 95607960 95608137 -63991646 + B3 SINE B2 39 213 -3 3 1314 325 305 13 0 chr3 95608179 95608264 -63991519 + ID4 SINE ID 7 92 -60 3 1314 623 211 34 27 chr3 95608281 95608427 -63991356 + B1_Mur1 SINE Alu 2 148 -1 3 1314 376 274 26 0 chr3 95608465 95608578 -63991205 + ID_B1 SINE B4 109 224 0 3 1314 306 87 0 0 chr3 95608646 95608692 -63991091 - B1_Mur4 SINE Alu -8 142 97 3 1314 774 20 10 0 chr3 95610026 95610128 -63989655 - B1_Mus2 SINE Alu -1 146 44 3 1314 294 51 0 0 chr3 95610211 95610250 -63989533 - B1_Mus2 SINE Alu -108 39 1 3 1314 323 211 168 0 chr3 95610592 95610687 -63989096 + PB1D9 SINE Alu 10 120 0 3 1314 468 227 10 0 chr3 95610711 95610808 -63988975 + PB1D10 SINE Alu 14 111 -6 3 1314 532 267 6 98 chr3 95611162 95611345 -63988438 - B3 SINE B2 -11 187 22 3 1314 323 238 0 0 chr3 95611485 95611548 -63988235 + B1_Mur3 SINE Alu 1 63 -86 3 1314 295 280 13 39 chr3 95611548 95611562 -63988221 + B4 SINE B4 86 160 -132 3 1314 569 189 34 126 chr3 95611602 95611660 -63988123 + B3 SINE B2 53 107 -109 3 1314 1705 21 0 0 chr3 95611660 95611851 -63987932 + B2_Mm1a SINE B2 1 191 -2 3 1314 569 189 34 126 chr3 95611851 95611967 -63987816 + B3 SINE B2 108 210 -6 3 1314 681 226 9 162 chr3 95612251 95612473 -63987310 - B3A SINE B2 -11 205 2 3 1314 282 274 0 0 chr3 95612709 95612771 -63987012 - PB1D10 SINE Alu -20 97 36 3 1314 266 342 117 6 chr3 95612868 95613030 -63986753 + L2 LINE L2 2430 2609 -810 3 1314 520 233 17 25 chr3 95613122 95613241 -63986542 + B1F SINE Alu 4 121 -28 3 1314 182 323 77 0 chr3 95613297 95613362 -63986421 + L2 LINE L2 2686 2755 -664 3 1314 1095 191 9 23 chr3 95613426 95613640 -63986143 - B3 SINE B2 -5 211 1 3 1314 352 113 161 14 chr3 95613800 95613911 -63985872 + B2_Mm2 SINE B2 47 193 0 3 1314 832 272 23 0 chr3 95614065 95614282 -63985501 + ID_B1 SINE B4 3 224 0 3 1314 684 215 14 7 chr3 95614354 95614499 -63985284 + B3 SINE B2 66 211 -5 3 1314 253 228 206 10 chr3 95614622 95614724 -63985059 + PB1 SINE Alu 1 122 -5 3 1314 243 88 0 0 chr3 95615432 95615466 -63984317 + (CAAG)n Simple_repeat Simple_repeat 2 35 0 3 1314 490 186 155 0 chr3 95615482 95615576 -63984207 + B3 SINE B2 68 167 -49 3 1314 393 75 0 0 chr3 95615576 95615629 -63984154 + (CA)n Simple_repeat Simple_repeat 2 54 0 3 1314 490 186 155 0 chr3 95615629 95615663 -63984120 + B3 SINE B2 168 215 -1 3 1314 374 216 57 29 chr3 95615790 95615895 -63983888 + B1F2 SINE Alu 5 112 -37 3 1314 1209 106 30 41 chr3 95616120 95616317 -63983466 + B2_Mm2 SINE B2 1 195 0 3 1314 345 282 19 0 chr3 95616421 95616524 -63983259 + MIR SINE MIR 72 176 -86 3 1314 1130 238 35 35 chr3 95616527 95616810 -63982973 + Lx6 LINE L1 7155 7437 -23 3 1314 234 257 0 41 chr3 95616840 95616913 -63982870 + MIR SINE MIR 189 258 -4 3 1314 251 250 0 0 chr3 95617172 95617224 -63982559 - B1F2 SINE Alu -92 57 6 3 1314 544 221 106 0 chr3 95617581 95617694 -63982089 + B3A SINE B2 2 126 -72 3 1314 930 47 85 0 chr3 95617748 95617877 -63981906 + B1_Mus2 SINE Alu 8 147 0 3 1314 344 324 0 62 chr3 95618443 95618555 -63981228 - PB1D10 SINE Alu -7 110 6 3 1314 696 159 22 15 chr3 95618746 95618880 -63980903 + B1_Mur2 SINE Alu 2 136 -13 3 1314 1203 61 0 0 chr3 95618922 95619069 -63980714 + B1_Mus1 SINE Alu 2 148 0 3 1314 596 221 46 0 chr3 95619292 95619423 -63980360 + B1_Mur2 SINE Alu 1 137 -12 3 1314 210 118 0 0 chr3 95619426 95619460 -63980323 + (TGGA)n Simple_repeat Simple_repeat 4 37 0 3 1314 236 279 51 0 chr3 95619547 95619626 -63980157 + B1F1 SINE Alu 33 115 -34 3 1314 1060 69 7 52 chr3 95619874 95620027 -63979756 + B1_Mus1 SINE Alu 2 147 -1 3 1314 186 241 74 0 chr3 95620805 95620859 -63978924 + MIRc SINE MIR 85 142 -126 3 1314 1210 48 0 0 chr3 95621026 95621171 -63978612 + B1_Mus2 SINE Alu 1 145 -2 3 1314 186 43 0 0 chr3 95621171 95621194 -63978589 + (TAA)n Simple_repeat Simple_repeat 2 24 0 3 1314 402 223 128 0 chr3 95621475 95621569 -63978214 - B1F SINE Alu -43 106 1 3 1314 234 0 0 0 chr3 95622708 95622734 -63977049 + (CGG)n Simple_repeat Simple_repeat 2 27 0 3 1314 486 88 0 0 chr3 95623175 95623243 -63976540 + (T)n Simple_repeat Simple_repeat 1 68 0 3 1314 1244 42 0 0 chr3 95623965 95624109 -63975674 - B1_Mus1 SINE Alu 0 148 5 3 1314 1256 88 16 16 chr3 95624176 95624360 -63975423 + B2_Mm1t SINE B2 2 185 -8 3 1314 211 265 71 29 chr3 95624514 95624584 -63975199 - L2a LINE L2 -35 3391 3319 3 1314 409 242 103 41 chr3 95624744 95624938 -63974845 - L2a LINE L2 -337 3082 2877 3 1314 564 148 59 25 chr3 95624940 95625058 -63974725 - B1_Mur3 SINE Alu 0 149 28 3 1314 1007 112 28 0 chr3 95625089 95625232 -63974551 - B1_Mus1 SINE Alu 0 148 2 3 1314 323 158 13 18 chr3 95625442 95625507 -63974276 + B2_Mm2 SINE B2 47 116 -82 3 1314 218 295 12 82 chr3 95626047 95626132 -63973651 - B4A SINE B4 -128 164 86 3 1314 210 71 0 0 chr3 95626136 95626164 -63973619 + (T)n Simple_repeat Simple_repeat 1 28 0 3 1314 995 44 73 0 chr3 95626186 95626323 -63973460 + B1_Mus1 SINE Alu 2 148 0 3 1314 246 32 0 0 chr3 95626330 95626361 -63973422 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 3 1314 242 286 91 20 chr3 95626362 95626480 -63973303 - B1_Mur1 SINE Alu -20 130 6 3 1314 697 189 0 0 chr3 95626913 95627024 -63972759 + B1_Mur2 SINE Alu 3 113 -36 3 1314 1168 61 0 13 chr3 95627078 95627227 -63972556 - B1_Mus1 SINE Alu 0 148 2 3 1314 247 226 194 61 chr3 95627262 95627427 -63972356 - B3 SINE B2 0 216 30 3 1314 578 88 2 192 chr3 95627403 95627478 -63972305 - B1_Mus2 SINE Alu -22 125 57 3 1314 1645 36 0 10 chr3 95627478 95627672 -63972111 + B2_Mm1a SINE B2 2 193 0 3 1314 578 76 0 199 chr3 95627672 95627746 -63972037 - B1_Mus2 SINE Alu -91 56 1 3 1314 733 176 0 30 chr3 95627774 95627909 -63971874 - B2_Mm2 SINE B2 -64 131 1 3 1314 231 337 12 0 chr3 95627972 95628058 -63971725 + MIRb SINE MIR 165 251 -17 3 1314 225 0 0 0 chr3 95628085 95628110 -63971673 + (TG)n Simple_repeat Simple_repeat 1 25 0 3 1314 222 62 0 0 chr3 95628110 95628142 -63971641 + (CAGA)n Simple_repeat Simple_repeat 2 33 0 3 1314 207 0 0 0 chr3 95628220 95628243 -63971540 + (T)n Simple_repeat Simple_repeat 1 23 0 3 1314 701 61 10 0 chr3 95628245 95628344 -63971439 - B1_Mus2 SINE Alu -1 146 47 3 1314 267 230 66 26 chr3 95628286 95628362 -63971421 - RLTR25B LTR ERVK -519 509 431 3 1314 348 276 86 0 chr3 95628437 95628542 -63971241 - PB1D9 SINE Alu -5 115 2 3 1314 601 194 31 0 chr3 95628549 95628678 -63971105 - B1_Mus2 SINE Alu -3 144 12 3 1314 319 226 100 46 chr3 95628793 95628923 -63970860 - ID_B1 SINE B4 -6 218 82 3 1314 230 175 0 24 chr3 95629020 95629061 -63970722 - tRNA-Thr-ACG_ tRNA tRNA -37 40 1 3 1314 783 264 107 34 chr3 95629075 95629373 -63970410 - MTEa LTR MaLR -59 320 1 3 1314 264 301 131 37 chr3 95629448 95629555 -63970228 + PB1D10 SINE Alu 1 117 0 3 1314 261 0 0 0 chr3 95629586 95629615 -63970168 + (CA)n Simple_repeat Simple_repeat 2 30 0 3 1314 23 0 0 0 chr3 95629924 95629947 -63969836 + AT_rich Low_complexity Low_complexity 1 23 0 3 1314 269 226 0 0 chr3 95629984 95630046 -63969737 + ID_B1 SINE B4 163 224 0 3 1314 233 250 78 0 chr3 95630046 95630110 -63969673 + ID4_ SINE ID 2 70 -13 3 1314 940 118 28 0 chr3 95630184 95630328 -63969455 + B1_Mus1 SINE Alu 1 148 0 3 1314 330 26 0 0 chr3 95630328 95630367 -63969416 + (A)n Simple_repeat Simple_repeat 1 39 0 3 1314 2722 183 171 16 chr3 95630419 95631120 -63968663 - RLTR40 LTR ERVK -7 810 1 3 1314 1211 61 0 7 chr3 95631215 95631363 -63968420 + B1_Mus2 SINE Alu 1 147 0 3 1314 519 116 12 0 chr3 95631379 95631465 -63968318 - B2_Mm1t SINE B2 -19 174 88 3 1314 237 297 87 11 chr3 95631481 95631573 -63968210 + ID_B1 SINE B4 114 212 -12 3 1314 523 289 49 7 chr3 95631613 95631756 -63968027 + B1_Mur1 SINE Alu 1 149 0 3 1314 902 192 16 0 chr3 95631875 95632057 -63967726 + B2_Mm2 SINE B2 1 185 -10 3 1314 703 65 269 0 chr3 95632068 95632176 -63967607 + B1_Mus1 SINE Alu 1 137 -11 3 1314 216 0 0 0 chr3 95632179 95632203 -63967580 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 3 1314 1237 104 44 0 chr3 95632320 95632502 -63967281 + B2_Mm2 SINE B2 1 190 -5 3 1314 1284 98 33 0 chr3 95632519 95632702 -63967081 + B2_Mm1a SINE B2 3 191 -2 4 1314 1458 53 43 0 chr3 95632747 95632934 -63966849 + B2_Mm2 SINE B2 1 195 0 4 1314 220 289 47 85 chr3 95633091 95633197 -63966586 - PB1D10 SINE Alu -14 103 2 4 1314 299 270 61 74 chr3 95633218 95633234 -63966549 - B1_Mur3 SINE Alu -3 146 134 4 1314 948 259 99 52 chr3 95633234 95633577 -63966206 + ORR1E LTR MaLR 1 359 0 4 1314 311 270 61 74 chr3 95633577 95633708 -63966075 - B1F SINE Alu -16 133 1 4 1314 448 235 240 6 chr3 95633742 95633913 -63965870 + ID_B1 SINE B4 1 211 -13 4 1314 189 107 0 0 chr3 95633913 95633941 -63965842 + (T)n Simple_repeat Simple_repeat 1 28 0 4 1314 1272 27 0 0 chr3 95633941 95634087 -63965696 - B1_Mus2 SINE Alu 0 147 2 4 1314 263 278 0 0 chr3 95635046 95635100 -63964683 - ID4_ SINE ID -8 75 22 4 1314 236 300 12 24 chr3 95635346 95635428 -63964355 - ID4 SINE ID 0 83 3 4 1314 198 0 0 0 chr3 95635436 95635458 -63964325 + (T)n Simple_repeat Simple_repeat 1 22 0 4 1314 1141 102 11 6 chr3 95635481 95635658 -63964125 + B2_Mm1t SINE B2 2 179 -14 4 1314 324 105 313 17 chr3 95635686 95635801 -63963982 + B2_Mm2 SINE B2 47 195 0 4 1314 826 193 58 24 chr3 95635797 95635977 -63963806 + B3 SINE B2 27 210 -6 4 1314 256 310 93 17 chr3 95636000 95636118 -63963665 - B3A SINE B2 -28 170 44 4 1314 457 231 6 83 chr3 95636576 95636732 -63963051 - B1F SINE Alu -1 148 5 4 1314 311 132 235 0 chr3 95636865 95636933 -63962850 + B1_Mur1 SINE Alu 66 149 0 4 1314 233 386 75 8 chr3 95637033 95637078 -63962705 - ID_B1 SINE B4 -13 211 84 4 1314 235 400 13 0 chr3 95637078 95637153 -63962630 - PB1D10 SINE Alu -39 78 3 4 1314 279 224 104 0 chr3 95637176 95637243 -63962540 - ID_B1 SINE B4 -5 219 146 4 1314 566 229 17 8 chr3 95637437 95637556 -63962227 + PB1D9 SINE Alu 1 120 0 4 1314 562 171 19 27 chr3 95638235 95638361 -63961422 - B1_Mur1 SINE Alu 0 149 24 4 1314 369 297 34 67 chr3 95638629 95638748 -63961035 - PB1D10 SINE Alu 0 117 3 4 1314 282 307 9 47 chr3 95638657 95638763 -63961020 - MT2B LTR ERVL -348 253 152 4 1314 712 206 7 0 chr3 95639107 95639243 -63960540 + B1_Mus2 SINE Alu 5 141 -6 4 1314 282 293 0 0 chr3 95639770 95639886 -63959897 + (TA)n Simple_repeat Simple_repeat 1 116 0 4 1314 228 35 0 0 chr3 95640677 95640706 -63959077 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 4 1314 1178 51 0 0 chr3 95640706 95640844 -63958939 - B1_Mus2 SINE Alu -9 138 1 4 1314 213 132 53 0 chr3 95641175 95641213 -63958570 + B3A SINE B2 3 42 -156 4 1314 1280 14 7 0 chr3 95641213 95641359 -63958424 + B1_Mus2 SINE Alu 1 147 0 4 1314 1273 35 109 0 chr3 95641513 95641687 -63958096 + B2_Mm1a SINE B2 1 193 0 4 1314 298 265 58 46 chr3 95641705 95641792 -63957991 + B3A SINE B2 27 114 -84 4 1314 396 0 0 0 chr3 95641814 95641858 -63957925 + (CA)n Simple_repeat Simple_repeat 2 45 0 4 1314 576 238 15 216 chr3 95642136 95642270 -63957513 - ID_B1 SINE B4 -6 218 122 4 1314 1082 118 53 0 chr3 95642270 95642439 -63957344 - B2_Mm1t SINE B2 -15 178 1 4 1314 576 238 15 216 chr3 95642439 95642572 -63957211 - ID_B1 SINE B4 -103 121 5 4 1314 258 317 37 0 chr3 95642648 95642730 -63957053 - B4A SINE B4 -2 290 206 4 1314 22 35 0 0 chr3 95643493 95643522 -63956261 + AT_rich Low_complexity Low_complexity 1 29 0 4 1314 507 171 35 35 chr3 95643905 95644020 -63955763 + PB1D9 SINE Alu 5 119 -1 4 1314 686 171 315 6 chr3 95644137 95644302 -63955481 + B3 SINE B2 1 216 0 4 1314 1287 20 0 0 chr3 95644320 95644466 -63955317 + B1_Mus2 SINE Alu 2 147 0 4 1314 743 208 0 0 chr3 95644885 95645015 -63954768 + B3 SINE B2 1 130 -86 4 1314 980 176 104 0 chr3 95645127 95645320 -63954463 - B3 SINE B2 -3 213 1 4 1314 362 226 345 21 chr3 95645486 95645625 -63954158 - B4A SINE B4 -2 290 107 4 1314 257 246 13 76 chr3 95645558 95645637 -63954146 - PB1D7 SINE Alu -37 83 10 4 1314 252 0 0 0 chr3 95645689 95645717 -63954066 + (CA)n Simple_repeat Simple_repeat 1 28 0 4 1314 593 230 0 38 chr3 95645726 95645857 -63953926 - B3 SINE B2 -24 192 67 4 1314 1683 36 0 0 chr3 95645874 95646067 -63953716 - B2_Mm1a SINE B2 0 193 1 4 1314 637 222 35 43 chr3 95646334 95646475 -63953308 + B1_Mur1 SINE Alu 2 141 -8 4 1314 1418 59 31 21 chr3 95646523 95646714 -63953069 + B2_Mm2 SINE B2 2 194 -1 4 1314 210 215 12 25 chr3 95646904 95646985 -63952798 + A-rich Low_complexity Low_complexity 2 81 0 4 1314 698 243 0 66 chr3 95647017 95647191 -63952592 + B3 SINE B2 38 200 -16 4 1314 1510 63 16 0 chr3 95647191 95647382 -63952401 + B2_Mm2 SINE B2 2 195 0 4 1314 353 268 0 12 chr3 95647720 95647803 -63951980 - ID4 SINE ID 0 83 2 4 1314 797 262 11 0 chr3 95649336 95649523 -63950260 + B3 SINE B2 22 210 -6 4 1314 200 204 0 0 chr3 95649532 95649581 -63950202 + A-rich Low_complexity Low_complexity 4 52 0 4 1314 388 165 39 202 chr3 95649802 95649931 -63949852 - B1_Mus1 SINE Alu -35 113 6 4 1314 644 205 0 0 chr3 95649993 95650115 -63949668 - B3 SINE B2 -93 123 2 4 1314 781 217 211 0 chr3 95650134 95650309 -63949474 - B3 SINE B2 0 216 5 4 1314 276 257 0 67 chr3 95650333 95650408 -63949375 - ID4 SINE ID -3 80 11 4 1314 498 323 0 0 chr3 95650476 95650606 -63949177 - B1F2 SINE Alu -12 137 8 4 1314 1218 61 0 0 chr3 95650813 95650960 -63948823 + B1_Mus1 SINE Alu 2 148 0 4 1314 1370 74 5 21 chr3 95651021 95651213 -63948570 + B2_Mm2 SINE B2 2 190 -5 4 1314 600 264 58 1 chr3 95652158 95652335 -63947448 + B3 SINE B2 1 186 -9 4 1314 521 231 56 0 chr3 95652346 95652454 -63947329 + PB1D9 SINE Alu 1 114 -6 4 1314 184 265 265 0 chr3 95653213 95653315 -63946468 + L2b LINE L2 3024 3152 -223 4 1314 439 274 0 33 chr3 95654257 95654378 -63945405 + PB1D10 SINE Alu 1 117 0 4 1314 700 258 51 0 chr3 95654381 95654559 -63945224 + B3A SINE B2 2 188 -10 4 1314 373 232 26 5 chr3 95655266 95655376 -63944407 - ID4_ SINE ID -40 112 1 4 1314 1605 53 0 0 chr3 95655719 95655909 -63943874 - B2_Mm1t SINE B2 -2 191 2 4 1314 1058 102 14 7 chr3 95655933 95656081 -63943702 - B1_Mur4 SINE Alu 0 150 2 4 1314 271 169 169 0 chr3 95656105 95656164 -63943619 + B3A SINE B2 1 69 -129 4 1314 697 226 85 57 chr3 95656712 95656825 -63942958 + ID_B1 SINE B4 8 131 -93 4 1314 962 170 130 0 chr3 95656825 95657025 -63942758 - URR1A DNA MER1_type 0 226 1 4 1314 697 226 85 57 chr3 95657025 95657122 -63942661 + ID_B1 SINE B4 132 224 0 4 1314 226 225 200 40 chr3 95657115 95657240 -63942543 + B4 SINE B4 80 224 -68 4 1314 461 215 9 18 chr3 95657135 95657244 -63942539 + PB1D9 SINE Alu 12 119 -1 4 1314 286 316 18 0 chr3 95657752 95657866 -63941917 - PB1D7 SINE Alu 0 120 5 4 1314 417 200 164 9 chr3 95658469 95658585 -63941198 + ID_B1 SINE B4 91 224 0 4 1314 248 318 26 60 chr3 95658929 95659046 -63940737 - L2a LINE L2 -5 3421 3309 4 1314 232 240 0 0 chr3 95659280 95659330 -63940453 + G-rich Low_complexity Low_complexity 5 54 0 4 1314 21 36 0 0 chr3 95659841 95659869 -63939914 + GC_rich Low_complexity Low_complexity 1 28 0 4 1314 202 346 55 42 chr3 95660272 95660489 -63939294 + L2a LINE L2 3040 3259 -167 4 1314 3216 101 42 2 chr3 95660510 95660967 -63938816 - MT2C_Mm LTR ERVL 0 475 1 4 1314 243 0 0 0 chr3 95661075 95661102 -63938681 + (T)n Simple_repeat Simple_repeat 1 27 0 4 1314 1406 60 66 0 chr3 95661194 95661377 -63938406 + B2_Mm2 SINE B2 1 195 0 4 1314 202 206 0 0 chr3 95661413 95661447 -63938336 + polypurine Low_complexity Low_complexity 4 37 0 4 1314 649 220 45 0 chr3 95661534 95661666 -63938117 - ID_B1 SINE B4 0 224 87 4 1314 251 349 83 0 chr3 95661735 95661844 -63937939 + RSINE1 SINE B4 17 134 -31 4 1314 342 233 14 0 chr3 95661864 95661937 -63937846 + ID4 SINE ID 5 78 -5 4 1314 473 0 18 0 chr3 95662166 95662223 -63937560 + (TG)n Simple_repeat Simple_repeat 1 58 0 4 1314 1387 58 29 0 chr3 95662420 95662593 -63937190 + B2_Mm1t SINE B2 4 181 -12 4 1314 252 0 0 0 chr3 95662968 95662996 -63936787 + (A)n Simple_repeat Simple_repeat 1 28 0 4 1314 341 273 16 91 chr3 95663276 95663397 -63936386 + PB1 SINE Alu 5 116 -11 4 1314 936 191 6 0 chr3 95663544 95663701 -63936082 + RSINE1 SINE B4 2 159 -6 4 1314 831 179 7 0 chr3 95663744 95663884 -63935899 + B1_Mus1 SINE Alu 6 146 -2 4 1314 314 329 51 96 chr3 95663748 95663926 -63935857 + B4 SINE B4 94 263 -29 4 1314 320 175 16 0 chr3 95663926 95663989 -63935794 + L1M3 LINE L1 5060 5123 -1017 4 1314 336 218 39 0 chr3 95664016 95664094 -63935689 + B1F1 SINE Alu 2 82 -67 4 1314 248 239 80 6 chr3 95664297 95664394 -63935389 + B1F SINE Alu 14 117 0 4 1314 931 114 106 22 chr3 95665238 95665417 -63934366 + B2_Mm2 SINE B2 2 195 0 4 1314 1098 75 0 7 chr3 95665437 95665585 -63934198 + B1_Mus1 SINE Alu 2 148 0 4 1314 528 207 57 8 chr3 95665610 95665732 -63934051 + B1_Mur3 SINE Alu 1 128 -21 5 1314 271 93 139 0 chr3 95665761 95665804 -63933979 - L1MB3 LINE L1 -44 6139 6091 5 1314 387 284 48 10 chr3 95665812 95665915 -63933868 - B3 SINE B2 -28 188 82 5 1314 558 245 54 18 chr3 95665919 95666085 -63933698 - B3 SINE B2 -43 173 2 5 1314 329 178 0 27 chr3 95666091 95666166 -63933617 + CT-rich Low_complexity Low_complexity 4 76 0 5 1314 1361 86 43 0 chr3 95666307 95666493 -63933290 - B2_Mm2 SINE B2 0 195 2 5 1314 748 150 0 16 chr3 95667174 95667296 -63932487 + PB1D9 SINE Alu 1 120 0 5 1314 180 0 0 0 chr3 95667338 95667358 -63932425 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 5 1314 464 260 53 27 chr3 95667926 95667944 -63931839 + ID_B1 SINE B4 70 223 -1 5 1314 793 159 45 0 chr3 95667944 95668076 -63931707 + B1_Mur1 SINE Alu 11 148 -1 5 1314 189 0 0 0 chr3 95668078 95668099 -63931684 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 5 1314 1523 53 16 16 chr3 95668124 95668316 -63931467 + B2_Mm2 SINE B2 2 193 -2 5 1314 280 218 162 25 chr3 95668353 95668433 -63931350 + B4 SINE B4 51 141 -151 5 1314 372 133 0 0 chr3 95668442 95668502 -63931281 + (CA)n Simple_repeat Simple_repeat 2 61 0 5 1314 340 107 473 0 chr3 95668614 95668726 -63931057 + ID_B1 SINE B4 54 218 -6 5 1314 303 189 0 42 chr3 95668782 95668854 -63930929 + ID4_ SINE ID 2 70 -13 5 1314 255 261 147 53 chr3 95669921 95670071 -63929712 + YREP_Mm Unknown Unknown 132 295 -1517 5 1314 651 229 7 30 chr3 95669947 95670082 -63929701 - ID_B1 SINE B4 -1 223 92 5 1314 448 172 103 41 chr3 95670307 95670404 -63929379 - ID_B1 SINE B4 -20 204 102 5 1314 1128 88 0 0 chr3 95670441 95670588 -63929195 - B1_Mm SINE Alu 0 147 1 5 1314 991 92 0 8 chr3 95670756 95670887 -63928896 + B1_Mus1 SINE Alu 1 130 -18 5 1314 311 221 157 69 chr3 95670905 95671007 -63928776 - PB1D10 SINE Alu -6 111 1 5 1314 639 275 22 83 chr3 95671053 95671283 -63928500 + ID_B1 SINE B4 4 219 -5 5 1314 572 208 195 63 chr3 95671369 95671559 -63928224 - B3 SINE B2 0 216 2 5 1314 432 268 62 0 chr3 95671559 95671656 -63928127 - RSINE1 SINE B4 -36 129 27 5 1314 741 305 5 5 chr3 95671665 95671869 -63927914 - ID_B1 SINE B4 -19 205 2 5 1314 370 179 313 40 chr3 95671971 95672070 -63927713 - B1_Mur1 SINE Alu -1 148 23 5 1314 380 141 172 0 chr3 95672106 95672170 -63927613 + tRNA-Gly-GGA tRNA tRNA 1 75 0 5 1314 972 132 51 22 chr3 95672281 95672459 -63927324 + B2_Mm2 SINE B2 10 192 -3 5 1314 448 227 91 0 chr3 95672808 95672940 -63926843 + B1_Mur1 SINE Alu 5 148 -1 5 1314 402 192 67 104 chr3 95673014 95673148 -63926635 + B3A SINE B2 66 194 -4 5 1314 533 199 104 13 chr3 95673291 95673444 -63926339 - B3A SINE B2 -34 182 1 5 1314 538 189 11 0 chr3 95673579 95673674 -63926109 + ID_B1 SINE B4 108 203 -21 5 1314 326 218 155 19 chr3 95673800 95673959 -63925824 - ID_B1 SINE B4 0 224 47 5 1314 1026 139 70 37 chr3 95674057 95674244 -63925539 + B2_Mm2 SINE B2 1 193 -2 5 1314 202 143 20 20 chr3 95674244 95674294 -63925489 + GA-rich Low_complexity Low_complexity 1 50 0 5 1314 866 122 285 6 chr3 95674703 95674868 -63924915 + B3 SINE B2 5 215 -1 5 1314 655 202 25 0 chr3 95674925 95675044 -63924739 + RSINE1 SINE B4 7 128 -37 5 1314 954 106 28 7 chr3 95675090 95675233 -63924550 + B1_Mus1 SINE Alu 2 147 -1 5 1314 845 217 23 46 chr3 95676107 95676324 -63923459 - B3 SINE B2 0 216 5 5 1314 328 288 136 0 chr3 95676658 95676790 -63922993 + MER58B DNA MER1_type 167 316 -25 5 1314 208 313 60 12 chr3 95676815 95676885 -63922898 + MIRc SINE MIR 130 202 -66 5 1314 2729 64 6 0 chr3 95676885 95677229 -63922554 + L1_Mus1 LINE L1 6221 6566 -1 5 1314 208 313 60 12 chr3 95677229 95677242 -63922541 + MIRc SINE MIR 203 216 -52 5 1314 1028 224 0 58 chr3 95677301 95677524 -63922259 - B3 SINE B2 0 216 7 5 1314 850 237 11 4 chr3 95677567 95677756 -63922027 - B3 SINE B2 -4 194 4 5 1314 246 105 0 0 chr3 95677835 95677873 -63921910 + (TG)n Simple_repeat Simple_repeat 1 38 0 5 1314 1666 42 0 0 chr3 95677935 95678128 -63921655 + B2_Mm1a SINE B2 1 193 0 5 1314 680 267 0 52 chr3 95678157 95678311 -63921472 - RSINE1 SINE B4 -14 151 6 5 1314 267 189 0 0 chr3 95678328 95678381 -63921402 + (TG)n Simple_repeat Simple_repeat 2 54 0 5 1314 382 249 68 115 chr3 95678398 95678589 -63921194 - B3 SINE B2 -30 186 5 5 1314 407 264 113 30 chr3 95678602 95678735 -63921048 - ID_B1 SINE B4 -6 218 75 5 1314 742 170 215 6 chr3 95678823 95678995 -63920788 - B3 SINE B2 -7 209 2 5 1314 207 0 0 0 chr3 95679021 95679044 -63920739 + (TC)n Simple_repeat Simple_repeat 2 24 0 5 1314 297 0 0 0 chr3 95679044 95679076 -63920707 + (TG)n Simple_repeat Simple_repeat 2 34 0 5 1314 565 282 30 0 chr3 95679092 95679223 -63920560 - RSINE1 SINE B4 -29 136 2 5 1314 348 291 173 15 chr3 95679540 95679742 -63920041 - L2 LINE L2 -1119 2300 2067 5 1314 274 286 0 28 chr3 95679954 95680026 -63919757 + ID4 SINE ID 6 75 -8 5 1314 656 213 115 29 chr3 95680194 95680368 -63919415 + B3 SINE B2 27 215 -1 5 1314 481 158 47 150 chr3 95680394 95680420 -63919363 + PB1D9 SINE Alu 1 24 -96 5 1314 1249 99 16 42 chr3 95680420 95680610 -63919173 - B2_Mm1a SINE B2 -8 185 1 5 1314 481 158 47 150 chr3 95680610 95680710 -63919073 + PB1D9 SINE Alu 25 114 -6 5 1314 1192 68 0 0 chr3 95680742 95680889 -63918894 + B1_Mus2 SINE Alu 1 147 0 5 1314 1422 75 11 0 chr3 95681841 95682029 -63917754 + B2_Mm1t SINE B2 2 191 -2 5 1314 1330 87 33 0 chr3 95682029 95682213 -63917570 + B2_Mm2 SINE B2 1 190 -5 5 1314 1644 36 0 15 chr3 95682220 95682416 -63917367 + B2_Mm1a SINE B2 1 193 0 5 1315 742 193 35 7 chr3 95683583 95683724 -63916059 + B1_Mur3 SINE Alu 1 145 -4 5 1315 453 36 0 0 chr3 95683724 95683779 -63916004 + (GGAAA)n Simple_repeat Simple_repeat 5 59 0 5 1315 1198 56 0 0 chr3 95683945 95684087 -63915696 + B1_Mus2 SINE Alu 1 142 -5 5 1315 275 235 168 30 chr3 95687438 95687539 -63912244 + PB1D10 SINE Alu 3 117 0 5 1315 639 144 0 10 chr3 95687676 95687774 -63912009 - B1_Mus2 SINE Alu -11 136 40 5 1315 259 194 12 122 chr3 95687714 95687796 -63911987 - RLTR25B LTR ERVK -530 498 426 5 1315 26 0 0 27 chr3 95687872 95687888 -63911895 + AT_rich Low_complexity Low_complexity 1 16 0 5 1315 1503 62 0 15 chr3 95687888 95688083 -63911700 - B2_Mm2 SINE B2 -3 192 1 5 1315 26 0 0 27 chr3 95688083 95688103 -63911680 + AT_rich Low_complexity Low_complexity 1 20 0 5 1315 528 269 61 56 chr3 95688185 95688382 -63911401 + B3A SINE B2 1 198 0 5 1315 751 53 0 102 chr3 95689408 95689535 -63910248 - B1_Mus1 SINE Alu 0 148 35 5 1315 323 188 112 45 chr3 95689462 95689551 -63910232 - MT2B LTR ERVL -344 257 163 5 1315 539 307 31 0 chr3 95690023 95690150 -63909633 - RSINE1 SINE B4 -29 136 6 5 1315 295 216 20 120 chr3 95690321 95690343 -63909440 + MT2B LTR ERVL 143 162 -439 5 1315 1105 101 0 20 chr3 95690343 95690494 -63909289 + B1_Mus1 SINE Alu 1 148 0 5 1315 295 216 20 120 chr3 95690494 95690571 -63909212 + MT2B LTR ERVL 163 232 -369 5 1315 535 120 17 6 chr3 95690495 95690604 -63909179 + B1_Mus1 SINE Alu 1 113 -36 5 1315 421 246 84 42 chr3 95690737 95690856 -63908927 - RSINE1 SINE B4 -35 130 7 5 1315 676 224 7 69 chr3 95690859 95691003 -63908780 - B1_Mur3 SINE Alu -13 136 2 5 1315 211 356 11 44 chr3 95690924 95691015 -63908768 - B4A SINE B4 -127 165 78 5 1315 702 121 0 0 chr3 95691480 95691596 -63908187 + (CA)n Simple_repeat Simple_repeat 2 117 0 5 1315 1431 208 138 6 chr3 95691596 95691921 -63907862 + MTD LTR MaLR 45 412 -7 5 1315 204 306 65 0 chr3 95692213 95692275 -63907508 - L3b LINE CR1 -259 223 158 5 1315 333 47 0 0 chr3 95692524 95692567 -63907216 + (TTCC)n Simple_repeat Simple_repeat 1 43 0 5 1315 698 234 14 14 chr3 95692567 95692714 -63907069 - B1F2 SINE Alu -1 148 2 5 1315 482 250 8 43 chr3 95692987 95693104 -63906679 + B3A SINE B2 2 114 -84 5 1315 1322 155 5 19 chr3 95693279 95693489 -63906294 + B3 SINE B2 1 207 -9 5 1315 1044 52 96 0 chr3 95694008 95694143 -63905640 + B1_Mus1 SINE Alu 1 148 0 5 1315 225 335 48 97 chr3 95694264 95694340 -63905443 + MIR3 SINE MIR 45 120 -88 5 1315 882 169 0 14 chr3 95694340 95694484 -63905299 - B1_Mur4 SINE Alu -8 142 1 5 1315 225 335 48 97 chr3 95694484 95694572 -63905211 + MIR3 SINE MIR 121 201 -7 5 1315 727 82 14 3 chr3 95694784 95694896 -63904887 - B1_Mus2 SINE Alu 0 120 1 5 1315 528 297 7 7 chr3 95694898 95695047 -63904736 - B1_Mur1 SINE Alu 0 149 1 5 1315 951 125 14 7 chr3 95695096 95695241 -63904542 - B1_Mm SINE Alu -1 146 1 5 1315 429 308 66 16 chr3 95695242 95695364 -63904419 - ID_B1 SINE B4 -17 207 80 5 1315 194 0 0 37 chr3 95696298 95696325 -63903458 + (TCCCC)n Simple_repeat Simple_repeat 5 30 0 5 1315 603 259 40 17 chr3 95696431 95696604 -63903179 + B3 SINE B2 38 214 -2 5 1315 250 218 0 0 chr3 95696860 95696915 -63902868 + C-rich Low_complexity Low_complexity 1 55 0 5 1315 689 196 128 0 chr3 95702236 95702384 -63897399 - ID_B1 SINE B4 -53 171 5 6 1315 574 204 0 27 chr3 95702411 95702522 -63897261 - PB1D9 SINE Alu -12 108 1 6 1315 733 118 108 23 chr3 95702530 95702660 -63897123 - B1_Mur4 SINE Alu -1 149 9 6 1315 736 89 8 89 chr3 95704548 95704671 -63895112 - B1_Mus2 SINE Alu 0 147 35 6 1315 289 268 107 58 chr3 95704594 95704697 -63895086 - MT2B LTR ERVL -337 264 157 6 1315 775 174 14 0 chr3 95704816 95704954 -63894829 - B1_Mm SINE Alu -1 146 7 6 1315 392 194 162 77 chr3 95704859 95704976 -63894807 - MT2B LTR ERVL -344 257 131 6 1315 390 42 0 0 chr3 95706448 95706496 -63893287 + (GGA)n Simple_repeat Simple_repeat 3 50 0 6 1315 574 264 21 7 chr3 95706986 95707127 -63892656 - B1F1 SINE Alu -2 147 5 6 1315 290 216 227 0 chr3 95707523 95707540 -63892243 + B1_Mur4 SINE Alu 41 148 -2 6 1315 364 200 14 14 chr3 95707540 95707611 -63892172 + ID_B1 SINE B4 152 222 -2 6 1315 200 205 0 0 chr3 95707720 95707759 -63892024 + MIRc SINE MIR 213 251 -17 6 1315 232 182 0 22 chr3 95708478 95708523 -63891260 + CT-rich Low_complexity Low_complexity 1 44 0 6 1315 30 0 0 0 chr3 95709885 95709915 -63889868 + AT_rich Low_complexity Low_complexity 1 30 0 6 1315 369 0 0 0 chr3 95709915 95709956 -63889827 + (CA)n Simple_repeat Simple_repeat 2 42 0 6 1315 29 0 0 0 chr3 95710357 95710386 -63889397 + AT_rich Low_complexity Low_complexity 1 29 0 6 1315 913 171 206 0 chr3 95710410 95710585 -63889198 + B3 SINE B2 1 211 -5 6 1315 201 118 19 38 chr3 95710707 95710760 -63889023 + GA-rich Low_complexity Low_complexity 4 55 0 6 1315 519 80 308 43 chr3 95711982 95712099 -63887684 - B2_Mm2 SINE B2 -1 194 47 6 1315 1231 124 11 0 chr3 95712164 95712342 -63887441 - B2_Mm1t SINE B2 -13 180 1 6 1315 773 188 0 6 chr3 95712381 95712526 -63887257 - B1_Mur4 SINE Alu 0 150 10 6 1315 237 388 52 21 chr3 95712623 95712652 -63887131 - B3A SINE B2 0 198 133 6 1315 644 253 49 80 chr3 95712652 95712692 -63887091 - RSINE1 SINE B4 -6 159 126 6 1315 3250 92 20 0 chr3 95712692 95713140 -63886643 + L1_Mus3 LINE L1 6182 6638 0 6 1315 237 388 52 21 chr3 95713140 95713262 -63886521 - B3A SINE B2 -66 132 1 6 1315 190 296 0 101 chr3 95713263 95713342 -63886441 - MER5A DNA MER1_type -114 75 5 6 1315 299 275 0 0 chr3 95713841 95713910 -63885873 - ID_B1 SINE B4 -24 200 132 6 1315 847 227 80 5 chr3 95713998 95714197 -63885586 - B3 SINE B2 0 216 3 6 1315 378 61 0 0 chr3 95714197 95714246 -63885537 + (TTA)n Simple_repeat Simple_repeat 2 50 0 6 1315 285 303 53 0 chr3 95714246 95714322 -63885461 - PB1D7 SINE Alu -12 108 29 6 1315 345 356 10 0 chr3 95714679 95714780 -63885003 - ID_B1 SINE B4 -38 186 85 6 1315 271 230 95 0 chr3 95714872 95714946 -63884837 + RMER21B LTR ERV1 489 569 -273 6 1315 210 176 0 0 chr3 95715016 95715067 -63884716 + T-rich Low_complexity Low_complexity 1 51 0 6 1315 887 122 0 54 chr3 95715067 95715215 -63884568 - B1_Mur4 SINE Alu 0 150 11 6 1315 1262 89 44 0 chr3 95715220 95715400 -63884383 - B2_Mm2 SINE B2 0 195 8 6 1315 700 117 0 68 chr3 95715403 95715595 -63884188 + C-rich Low_complexity Low_complexity 2 180 0 6 1315 385 213 63 71 chr3 95715615 95715773 -63884010 - B3 SINE B2 0 193 41 6 1315 432 55 0 0 chr3 95715787 95715842 -63883941 + (TC)n Simple_repeat Simple_repeat 1 55 0 6 1315 985 164 108 0 chr3 95715842 95716037 -63883746 - B3 SINE B2 0 216 1 6 1315 1308 27 0 0 chr3 95716260 95716407 -63883376 - B1_Mus2 SINE Alu 0 147 1 6 1315 1636 42 0 0 chr3 95716409 95716600 -63883183 - B2_Mm1t SINE B2 -1 192 2 6 1315 3230 26 0 8 chr3 95716609 95716991 -63882792 - L1Md_F2 LINE L1 -2 6580 6202 6 1315 229 162 0 173 chr3 95717072 95717199 -63882584 + (CACCT)n Simple_repeat Simple_repeat 3 107 0 6 1315 336 312 18 27 chr3 95717353 95717465 -63882318 - PB1D10 SINE Alu -3 114 4 6 1315 224 111 0 22 chr3 95717523 95717569 -63882214 + (TTTTG)n Simple_repeat Simple_repeat 1 45 0 6 1315 653 224 49 0 chr3 95717569 95717712 -63882071 - B1_Mur4 SINE Alu 0 150 1 6 1315 325 272 25 0 chr3 95717811 95717892 -63881891 - PB1D10 SINE Alu -12 105 23 6 1315 1495 63 5 0 chr3 95717914 95718104 -63881679 + B2_Mm1a SINE B2 1 191 -2 6 1315 2135 146 93 40 chr3 95718156 95718457 -63881326 + RMER1A Other Other 557 889 -141 6 1315 1281 34 0 0 chr3 95718457 95718604 -63881179 - B1_Mus2 SINE Alu 0 147 1 6 1315 2135 146 93 40 chr3 95718604 95718752 -63881031 + RMER1A Other Other 890 1030 0 6 1315 216 97 0 0 chr3 95718752 95718783 -63881000 + (GGA)n Simple_repeat Simple_repeat 1 31 0 6 1315 278 330 53 0 chr3 95718795 95718889 -63880894 + B4 SINE B4 4 102 -190 6 1315 278 185 24 24 chr3 95718926 95719009 -63880774 + (CA)n Simple_repeat Simple_repeat 2 84 0 6 1315 671 165 173 0 chr3 95719249 95719376 -63880407 - B1_Mur2 SINE Alu 0 149 1 6 1315 799 229 40 11 chr3 95719409 95719586 -63880197 + B3A SINE B2 1 182 -16 6 1315 186 43 0 0 chr3 95719775 95719798 -63879985 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 6 1315 592 200 79 36 chr3 95719810 95719950 -63879833 + B1_Mus1 SINE Alu 2 147 -1 6 1315 604 132 0 37 chr3 95719954 95720088 -63879695 + G-rich Low_complexity Low_complexity 5 133 0 6 1315 316 276 52 31 chr3 95720096 95720193 -63879590 + B3A SINE B2 10 108 -90 6 1315 1105 67 0 0 chr3 95720338 95720473 -63879310 + B1_Mus2 SINE Alu 1 135 -12 6 1315 243 0 0 0 chr3 95720475 95720502 -63879281 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 6 1315 593 111 0 0 chr3 95720565 95720664 -63879119 + Lx2A LINE L1 6909 7007 -1 6 1315 623 194 0 0 chr3 95721716 95721814 -63877969 - B1_Mur3 SINE Alu -48 101 4 6 1315 633 27 0 0 chr3 95721968 95722043 -63877740 + (TCCC)n Simple_repeat Simple_repeat 2 76 0 6 1315 228 35 0 0 chr3 95722051 95722080 -63877703 + (TTTC)n Simple_repeat Simple_repeat 4 32 0 6 1315 623 202 0 0 chr3 95722080 95722179 -63877604 - B1_Mur3 SINE Alu -47 102 4 6 1315 591 272 6 31 chr3 95722235 95722260 -63877523 + ID_B1 SINE B4 65 223 -1 6 1315 792 175 22 7 chr3 95722260 95722398 -63877385 + B1_Mur1 SINE Alu 9 148 -1 6 1315 845 136 223 13 chr3 95722805 95722962 -63876821 - B3 SINE B2 0 216 27 6 1315 253 171 0 0 chr3 95723888 95723929 -63875854 - B3 SINE B2 -175 41 1 6 1315 27 29 0 0 chr3 95723929 95723963 -63875820 + AT_rich Low_complexity Low_complexity 1 34 0 6 1315 631 248 42 7 chr3 95723970 95724112 -63875671 + B3A SINE B2 1 147 -51 6 1315 297 0 0 0 chr3 95724112 95724145 -63875638 + (CA)n Simple_repeat Simple_repeat 2 34 0 6 1315 852 115 35 179 chr3 95724203 95724269 -63875514 - ORR1A2 LTR MaLR -8 319 287 6 1315 1194 55 7 0 chr3 95724269 95724415 -63875368 - B1_Mus1 SINE Alu 0 148 2 6 1315 852 115 35 179 chr3 95724415 95724549 -63875234 - ORR1A2 LTR MaLR -41 286 148 6 1315 4268 128 81 47 chr3 95724554 95725359 -63874424 + RMER17A2 LTR ERVK 75 906 0 6 1315 2236 144 69 23 chr3 95725554 95725946 -63873837 + MTC LTR MaLR 4 413 -8 6 1315 336 203 0 13 chr3 95726079 95726154 -63873629 - ID4_ SINE ID -9 74 1 6 1315 846 266 164 26 chr3 95726334 95726906 -63872877 - L1ME1 LINE L1 -3 6176 5520 6 1315 276 284 134 0 chr3 95726937 95727004 -63872779 - B4 SINE B4 0 292 217 6 1315 629 138 0 0 chr3 95727018 95727105 -63872678 + B1_Mus1 SINE Alu 1 87 -61 6 1315 323 231 96 0 chr3 95727100 95727191 -63872592 - MTEb LTR MaLR -264 115 1 6 1315 224 59 29 0 chr3 95727331 95727365 -63872418 + (TTTTC)n Simple_repeat Simple_repeat 5 39 0 6 1315 1175 61 0 7 chr3 95727365 95727514 -63872269 - B1_Mus1 SINE Alu 0 148 1 6 1315 676 248 0 0 chr3 95727743 95727876 -63871907 + RSINE1 SINE B4 2 134 -31 6 1315 665 64 306 9 chr3 95727923 95728034 -63871749 + B1_Mm SINE Alu 1 144 -3 6 1315 425 258 68 12 chr3 95728272 95728392 -63871391 - PB1 SINE Alu -2 125 1 6 1315 1599 32 27 0 chr3 95728838 95729026 -63870757 + B2_Mm1t SINE B2 1 193 0 6 1315 1126 219 36 63 chr3 95729064 95729438 -63870345 - RLTR33 LTR ERVK -85 593 145 6 1315 351 324 42 104 chr3 95729535 95729674 -63870109 - LTR16A LTR ERVL -270 181 46 6 1315 1617 42 5 0 chr3 95729674 95729864 -63869919 - B2_Mm1a SINE B2 -1 192 2 6 1315 351 324 42 104 chr3 95729864 95729917 -63869866 - LTR16A LTR ERVL -406 45 1 6 1315 684 188 14 35 chr3 95730118 95730261 -63869522 - ORR1C2 LTR MaLR -10 374 235 6 1315 333 47 0 0 chr3 95730261 95730304 -63869479 + (CAGG)n Simple_repeat Simple_repeat 3 45 0 6 1315 341 250 52 35 chr3 95730320 95730436 -63869347 - ORR1C2 LTR MaLR -126 248 131 6 1315 216 97 0 0 chr3 95730441 95730472 -63869311 + (T)n Simple_repeat Simple_repeat 1 31 0 6 1315 962 57 0 0 chr3 95730507 95730629 -63869154 - B1_Mus1 SINE Alu -9 139 18 6 1315 387 193 10 93 chr3 95730543 95730640 -63869143 - MT2B LTR ERVL -344 257 169 6 1315 1028 58 7 28 chr3 95730997 95731138 -63868645 + B1_Mm SINE Alu 1 138 -9 6 1315 703 181 59 15 chr3 95731178 95731313 -63868470 + B1_Mur4 SINE Alu 1 141 -9 6 1315 198 0 0 0 chr3 95731328 95731350 -63868433 + (CAAAA)n Simple_repeat Simple_repeat 3 24 0 6 1315 419 253 153 37 chr3 95731397 95731586 -63868197 - B3 SINE B2 -4 212 2 6 1315 757 120 68 0 chr3 95731587 95731704 -63868079 + B1_Mus2 SINE Alu 12 136 -11 6 1315 318 308 53 106 chr3 95731704 95731776 -63868007 + MT2B2 LTR ERVL 176 354 -230 6 1315 244 253 11 151 chr3 95731881 95731974 -63867809 - B1_Mur4 SINE Alu -52 98 19 7 1315 652 301 11 26 chr3 95732033 95732224 -63867559 - B3 SINE B2 -1 215 28 7 1315 698 192 7 52 chr3 95732363 95732517 -63867266 - B1_Mus2 SINE Alu 0 147 1 7 1315 23 54 0 0 chr3 95733891 95733928 -63865855 + GC_rich Low_complexity Low_complexity 1 37 0 7 1315 245 224 98 73 chr3 95735003 95735085 -63864698 + MT2B LTR ERVL 155 238 -363 7 1315 305 179 183 87 chr3 95735018 95735117 -63864666 + PB1D9 SINE Alu 7 116 -4 7 1315 1209 68 0 0 chr3 95735117 95735265 -63864518 + B1_Mus1 SINE Alu 1 148 0 7 1315 203 79 26 0 chr3 95735269 95735307 -63864476 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 7 1315 612 201 14 43 chr3 95735319 95735459 -63864324 + B1_Mur3 SINE Alu 1 136 -13 7 1315 185 0 0 39 chr3 95735460 95735486 -63864297 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 7 1315 306 219 118 52 chr3 95735787 95735914 -63863869 + B3 SINE B2 69 216 0 7 1315 1202 68 0 0 chr3 95735950 95736096 -63863687 + B1_Mus2 SINE Alu 2 147 0 7 1315 219 69 0 0 chr3 95736096 95736125 -63863658 + (A)n Simple_repeat Simple_repeat 1 29 0 7 1315 788 224 70 25 chr3 95736134 95736335 -63863448 + B3 SINE B2 2 211 -5 7 1315 202 231 19 0 chr3 95736859 95736911 -63862872 + (TATATG)n Simple_repeat Simple_repeat 4 56 0 7 1315 640 117 289 24 chr3 95736913 95737079 -63862704 - B3 SINE B2 -5 211 2 7 1315 378 0 0 0 chr3 95737240 95737282 -63862501 + (TC)n Simple_repeat Simple_repeat 1 42 0 7 1315 685 168 41 20 chr3 95737593 95737739 -63862044 - B1_Mur2 SINE Alu 0 149 1 7 1315 282 183 105 47 chr3 95738278 95738364 -63861419 + MT2B LTR ERVL 174 264 -337 7 1315 631 103 74 9 chr3 95738290 95738398 -63861385 + B1_Mur4 SINE Alu 36 150 0 7 1315 218 189 62 86 chr3 95738960 95739041 -63860742 + PB1D7 SINE Alu 34 112 -8 7 1315 791 173 0 0 chr3 95739044 95739171 -63860612 + B1_Mur1 SINE Alu 18 144 -5 7 1315 426 320 8 16 chr3 95739193 95739320 -63860463 + RSINE1 SINE B4 28 153 -12 7 1315 29 28 0 0 chr3 95739331 95739367 -63860416 + AT_rich Low_complexity Low_complexity 1 36 0 7 1315 1178 55 0 7 chr3 95739371 95739517 -63860266 + B1_Mm SINE Alu 3 147 0 7 1315 243 134 0 79 chr3 95739523 95739554 -63860229 + A-rich Low_complexity Low_complexity 2 31 0 7 1315 1604 47 0 0 chr3 95739554 95739745 -63860038 + B2_Mm1a SINE B2 2 192 -1 7 1315 243 134 0 79 chr3 95739745 95739802 -63859981 + A-rich Low_complexity Low_complexity 32 83 0 7 1315 1403 61 28 0 chr3 95739892 95740073 -63859710 - B2_Mm1a SINE B2 -6 187 2 7 1315 206 200 0 0 chr3 95740123 95740154 -63859629 + T-rich Low_complexity Low_complexity 14 44 0 7 1315 1116 75 0 13 chr3 95740154 95740303 -63859480 - B1_Mus2 SINE Alu 0 147 1 7 1315 479 240 46 46 chr3 95740472 95740581 -63859202 + PB1D10 SINE Alu 9 117 0 7 1315 220 224 212 0 chr3 95740586 95740671 -63859112 - PB1D10 SINE Alu -12 105 3 7 1315 732 182 29 0 chr3 95741143 95741280 -63858503 - B1_Mm SINE Alu -5 142 2 7 1315 694 127 30 145 chr3 95741485 95741651 -63858132 - B1_Mus1 SINE Alu 0 148 2 7 1315 228 333 0 0 chr3 95741801 95741927 -63857856 + GA-rich Low_complexity Low_complexity 2 127 0 7 1315 1180 69 0 0 chr3 95742754 95742899 -63856884 + B1_Mm SINE Alu 1 145 -2 7 1315 348 239 179 0 chr3 95742905 95743022 -63856761 - B3A SINE B2 -20 178 41 7 1315 338 236 28 0 chr3 95743466 95743538 -63856245 + ID4 SINE ID 4 77 -6 7 1315 1525 68 5 0 chr3 95743642 95743834 -63855949 - B2_Mm1t SINE B2 0 193 1 7 1315 802 211 122 21 chr3 95743855 95744044 -63855739 - B3 SINE B2 -6 210 3 7 1315 26 0 0 0 chr3 95744053 95744079 -63855704 + AT_rich Low_complexity Low_complexity 1 26 0 7 1315 359 293 67 8 chr3 95744554 95744688 -63855095 + B1F SINE Alu 4 145 -4 7 1315 498 288 43 24 chr3 95744821 95744985 -63854798 - B3 SINE B2 -4 212 46 7 1315 333 299 8 93 chr3 95744990 95745108 -63854675 - PB1D10 SINE Alu -1 116 9 7 1315 266 298 8 149 chr3 95745008 95745142 -63854641 - ID_B1 SINE B4 -45 179 65 7 1315 518 203 97 10 chr3 95745604 95745741 -63854042 - B3 SINE B2 -27 166 27 7 1315 688 142 9 0 chr3 95745750 95745856 -63853927 - B1_Mus2 SINE Alu 0 147 41 7 1315 404 345 42 7 chr3 95745918 95746061 -63853722 - B4A SINE B4 -93 199 52 7 1315 1711 123 170 6 chr3 95746573 95746885 -63852898 - ORR1B1 LTR MaLR 0 394 32 7 1315 216 235 14 56 chr3 95747139 95747211 -63852572 + BC1_Mm scRNA scRNA 19 87 -65 7 1315 183 42 0 0 chr3 95747215 95747239 -63852544 + (TGGGGG)n Simple_repeat Simple_repeat 2 25 0 7 1315 180 0 0 0 chr3 95747667 95747687 -63852096 + (T)n Simple_repeat Simple_repeat 1 20 0 7 1315 1249 21 0 7 chr3 95747692 95747837 -63851946 - B1_Mm SINE Alu -3 144 1 7 1315 238 271 229 0 chr3 95747854 95747950 -63851833 + PB1D9 SINE Alu 1 118 -2 7 1315 593 110 0 0 chr3 95748485 95748567 -63851216 + B3 SINE B2 1 82 -134 7 1315 529 209 18 26 chr3 95748569 95748682 -63851101 + PB1D9 SINE Alu 1 112 -8 7 1315 297 0 0 0 chr3 95748683 95748716 -63851067 + (CA)n Simple_repeat Simple_repeat 2 34 0 7 1315 459 0 0 0 chr3 95748716 95748766 -63851017 + (GA)n Simple_repeat Simple_repeat 2 52 0 7 1315 345 272 0 112 chr3 95751407 95751523 -63848260 + MT2B LTR ERVL 135 237 -364 7 1315 623 165 28 0 chr3 95751451 95751560 -63848223 + PB1D9 SINE Alu 9 120 0 7 1315 473 250 27 54 chr3 95751932 95752080 -63847703 - B1_Mur2 SINE Alu 0 149 6 7 1315 227 261 91 83 chr3 95751985 95752093 -63847690 - B4A SINE B4 -101 191 83 7 1315 287 269 31 31 chr3 95752093 95752189 -63847594 + PB1D10 SINE Alu 2 97 -20 7 1315 331 226 87 10 chr3 95752640 95752743 -63847040 - PB1D9 SINE Alu -5 115 5 7 1315 314 235 66 8 chr3 95752804 95752908 -63846875 - B3A SINE B2 -83 112 2 7 1315 270 0 0 0 chr3 95753027 95753057 -63846726 + (TG)n Simple_repeat Simple_repeat 1 30 0 7 1315 261 0 0 0 chr3 95753057 95753085 -63846698 + (GA)n Simple_repeat Simple_repeat 1 29 0 7 1315 335 274 88 105 chr3 95753245 95753416 -63846367 + RMER30 DNA MER1_type 12 179 -23 7 1315 1176 56 0 0 chr3 95753491 95753634 -63846149 + B1_Mus2 SINE Alu 5 147 0 7 1315 239 253 173 0 chr3 95753669 95753744 -63846039 - PB1D10 SINE Alu -6 111 24 7 1315 2557 54 6 0 chr3 95753939 95754256 -63845527 - L1_Mus1 LINE L1 0 6567 6249 7 1315 2893 51 14 0 chr3 95754256 95754607 -63845176 + L1_Mus1 LINE L1 5886 6241 -326 7 1315 1285 14 0 20 chr3 95755449 95755598 -63844185 - B1_Mus1 SINE Alu 0 148 3 7 1315 183 42 0 0 chr3 95755607 95755631 -63844152 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 7 1315 225 0 0 0 chr3 95755660 95755685 -63844098 + (TG)n Simple_repeat Simple_repeat 2 26 0 7 1315 814 112 8 0 chr3 95755745 95755870 -63843913 - B1_Mus1 SINE Alu -22 126 1 7 1315 426 211 28 140 chr3 95755870 95755910 -63843873 - MT2B LTR ERVL -447 154 131 7 1315 964 76 106 0 chr3 95756057 95756189 -63843594 + B1_Mm SINE Alu 1 146 -1 7 1315 218 244 12 82 chr3 95756422 95756507 -63843276 + PB1D10 SINE Alu 37 115 -2 7 1315 619 192 64 0 chr3 95756596 95756721 -63843062 - B1_Mus1 SINE Alu -9 139 7 7 1315 566 214 101 152 chr3 95757636 95757698 -63842085 - MER33 DNA MER1_type -19 305 248 7 1315 1380 65 43 5 chr3 95757698 95757884 -63841899 + B2_Mm1t SINE B2 1 193 0 7 1315 984 117 0 20 chr3 95757892 95758040 -63841743 + B1_Mur4 SINE Alu 4 148 -2 7 1315 566 214 101 152 chr3 95758040 95758244 -63841539 - MER33 DNA MER1_type -80 244 44 7 1315 230 291 23 107 chr3 95758395 95758526 -63841257 - YREP_Mm Unknown Unknown -1471 341 222 7 1315 239 305 0 8 chr3 95758412 95758428 -63841355 + ORR1B1-int LTR MaLR 632 646 -863 7 1315 920 69 0 0 chr3 95758428 95758543 -63841240 + B1_Mus1 SINE Alu 1 115 -33 7 1315 2823 58 3 19 chr3 95758543 95758913 -63840870 + RLTR10B2 LTR ERVK 1 364 -1 7 1315 245 125 0 0 chr3 95758913 95758946 -63840837 + B1_Mm SINE Alu 113 145 -2 7 1315 1003 251 22 68 chr3 95758974 95759295 -63840488 - RLTR42-int LTR ERVK -4755 767 462 7 1315 389 220 72 106 chr3 95759440 95759648 -63840135 - RLTR42-int LTR ERVK -5319 203 3 7 1315 734 137 7 20 chr3 95760939 95761088 -63838695 + CT-rich Low_complexity Low_complexity 2 148 0 7 1315 207 271 0 20 chr3 95761093 95761142 -63838641 + polypyrimidine Low_complexity Low_complexity 3 50 0 7 1315 499 183 8 102 chr3 95761150 95761278 -63838505 - B1_Mur2 SINE Alu -2 118 3 7 1315 268 288 0 29 chr3 95761626 95761694 -63838089 + C-rich Low_complexity Low_complexity 1 66 0 7 1315 256 333 37 0 chr3 95761694 95761775 -63838008 - PB1D10 SINE Alu -5 112 29 7 1315 339 25 0 0 chr3 95761907 95761947 -63837836 + (TG)n Simple_repeat Simple_repeat 1 40 0 7 1315 489 232 19 196 chr3 95762499 95762695 -63837088 - B3 SINE B2 0 216 35 7 1315 1416 176 40 170 chr3 95762695 95763125 -63836658 - ORR1D1 LTR MaLR 0 374 1 7 1315 489 239 124 49 chr3 95763125 95763142 -63836641 - B3 SINE B2 -182 34 18 7 1315 526 270 17 0 chr3 95763166 95763281 -63836502 + B3 SINE B2 86 202 -14 7 1315 2318 155 48 8 chr3 95763286 95763683 -63836100 - MTC LTR MaLR -8 413 1 7 1315 193 49 98 0 chr3 95763688 95763729 -63836054 + (CAAAA)n Simple_repeat Simple_repeat 2 46 0 7 1315 418 194 88 39 chr3 95763912 95764014 -63835769 + B2_Mm2 SINE B2 85 191 -4 8 1315 1091 72 0 0 chr3 95764018 95764156 -63835627 + B1_Mus1 SINE Alu 11 148 0 8 1315 306 50 0 0 chr3 95764156 95764196 -63835587 + (A)n Simple_repeat Simple_repeat 1 40 0 8 1315 958 281 44 71 chr3 95764905 95765311 -63834472 + RodERV21-int LTR ERV1 2911 3305 -1686 8 1315 1298 141 4 53 chr3 95765715 95765940 -63833843 + URR1A DNA MER1_type 1 214 -12 8 1315 1166 77 0 0 chr3 95766361 95766504 -63833279 + B1_Mus2 SINE Alu 4 146 -1 8 1315 950 185 75 20 chr3 95766846 95767045 -63832738 - B3 SINE B2 -5 211 2 8 1315 869 271 112 66 chr3 95767139 95767566 -63832217 - MLT1D LTR MaLR -11 494 48 8 1315 574 200 101 29 chr3 95767707 95767846 -63831937 - B1_Mur4 SINE Alu 0 150 2 8 1315 23 0 0 0 chr3 95767855 95767878 -63831905 + AT_rich Low_complexity Low_complexity 1 23 0 8 1315 698 213 23 15 chr3 95768445 95768617 -63831166 - B3 SINE B2 0 198 14 8 1315 958 92 8 22 chr3 95768622 95768756 -63831027 + B1_Mus1 SINE Alu 5 136 -12 8 1315 225 0 0 0 chr3 95768777 95768802 -63830981 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 8 1315 630 221 23 8 chr3 95769188 95769316 -63830467 + ID_B1 SINE B4 95 224 0 8 1315 546 277 142 46 chr3 95769325 95769522 -63830261 + B3 SINE B2 1 216 0 8 1315 469 276 114 11 chr3 95769612 95769788 -63829995 + MER20 DNA MER1_type 1 194 -25 8 1315 819 213 11 44 chr3 95770343 95770525 -63829258 + B3 SINE B2 41 216 0 8 1315 1257 34 0 0 chr3 95770649 95770796 -63828987 - B1_Mus1 SINE Alu 0 148 2 8 1315 573 241 35 35 chr3 95770905 95771047 -63828736 + RSINE1 SINE B4 3 144 -21 8 1315 4453 71 21 0 chr3 95771624 95772201 -63827582 + L1_Mus3 LINE L1 6044 6632 -6 8 1315 1267 64 35 6 chr3 95772481 95772655 -63827128 + B2_Mm2 SINE B2 9 187 -8 8 1315 404 245 149 63 chr3 95773396 95773592 -63826191 - MIR SINE MIR -39 229 10 8 1315 740 220 0 7 chr3 95773630 95773781 -63826002 + B1_Mur4 SINE Alu 1 150 0 8 1315 380 323 38 12 chr3 95773816 95773976 -63825807 - RSINE1 SINE B4 0 165 2 8 1315 441 0 0 0 chr3 95774010 95774059 -63825724 + (TTCC)n Simple_repeat Simple_repeat 4 52 0 8 1315 216 0 0 0 chr3 95774059 95774083 -63825700 + (TCC)n Simple_repeat Simple_repeat 3 26 0 8 1315 225 250 13 89 chr3 95774089 95774168 -63825615 - B1_Mur3 SINE Alu -54 95 23 8 1315 683 266 0 110 chr3 95774102 95774194 -63825589 - B4A SINE B4 -119 173 98 8 1315 962 230 65 5 chr3 95774194 95774227 -63825556 - B3 SINE B2 0 216 184 8 1315 509 89 25 0 chr3 95774227 95774306 -63825477 + (TATG)n Simple_repeat Simple_repeat 2 82 0 8 1315 962 230 65 5 chr3 95774306 95774473 -63825310 - B3 SINE B2 -33 183 4 8 1315 683 266 0 110 chr3 95774473 95774562 -63825221 - B4A SINE B4 -195 97 12 8 1315 1650 26 0 20 chr3 95774562 95774758 -63825025 - B2_Mm1a SINE B2 0 193 2 8 1315 414 278 50 34 chr3 95774825 95774944 -63824839 + RSINE1 SINE B4 3 123 -42 8 1315 229 310 0 14 chr3 95775255 95775327 -63824456 + ID4_ SINE ID 5 75 -8 8 1315 960 88 15 0 chr3 95775391 95775528 -63824255 - B1_Mur4 SINE Alu -2 148 10 8 1315 585 239 158 0 chr3 95775561 95775745 -63824038 - B3 SINE B2 -3 213 1 8 1315 249 266 31 0 chr3 95776103 95776167 -63823616 + ID_B1 SINE B4 136 201 -23 8 1315 252 0 0 0 chr3 95776201 95776229 -63823554 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 8 1315 697 138 0 0 chr3 95777924 95778040 -63821743 + URR1B DNA MER1_type 110 225 0 8 1315 1871 157 56 51 chr3 95778667 95778711 -63821072 - ORR1B2 LTR MaLR -9 358 327 8 1315 907 121 49 21 chr3 95778711 95778855 -63820928 - B1_Mus1 SINE Alu 0 148 1 8 1315 1871 157 56 51 chr3 95778855 95779009 -63820774 - ORR1B2 LTR MaLR -41 326 166 8 1315 207 0 0 0 chr3 95779009 95779032 -63820751 + (GA)n Simple_repeat Simple_repeat 2 24 0 8 1315 1871 157 56 51 chr3 95779032 95779188 -63820595 - ORR1B2 LTR MaLR -202 165 3 8 1315 354 241 71 36 chr3 95779288 95779400 -63820383 - B3 SINE B2 -4 212 97 8 1315 724 157 266 40 chr3 95779575 95779748 -63820035 + B3 SINE B2 1 212 -4 8 1315 282 95 0 0 chr3 95779755 95779797 -63819986 + (A)n Simple_repeat Simple_repeat 1 42 0 8 1315 351 0 0 0 chr3 95780243 95780282 -63819501 + (TG)n Simple_repeat Simple_repeat 2 40 0 8 1315 567 307 41 97 chr3 95780285 95780552 -63819231 - B4 SINE B4 -20 272 21 8 1315 494 243 167 0 chr3 95780740 95780884 -63818899 - Tigger5 DNA MER2_type -2202 204 37 8 1315 180 0 0 0 chr3 95781206 95781226 -63818557 + (T)n Simple_repeat Simple_repeat 1 20 0 8 1315 389 185 33 79 chr3 95781616 95781720 -63818063 - PB1 SINE Alu -3 124 18 8 1315 249 57 0 0 chr3 95781737 95781772 -63818011 + (T)n Simple_repeat Simple_repeat 1 35 0 8 1315 1300 20 0 0 chr3 95781772 95781919 -63817864 - B1_Mm SINE Alu 0 147 1 8 1315 247 123 53 27 chr3 95781958 95782033 -63817750 + (TAAA)n Simple_repeat Simple_repeat 1 77 0 8 1315 242 326 0 61 chr3 95782042 95782140 -63817643 - RSINE1 SINE B4 0 165 74 8 1315 315 0 0 0 chr3 95782283 95782318 -63817465 + (CA)n Simple_repeat Simple_repeat 1 35 0 8 1315 495 160 0 0 chr3 95782711 95782786 -63816997 - B1_Mur1 SINE Alu -29 120 46 8 1315 225 219 163 47 chr3 95782722 95782808 -63816975 - MT2B LTR ERVL -338 263 168 8 1315 250 316 0 0 chr3 95783127 95783184 -63816599 + ID4 SINE ID 27 83 0 8 1315 583 267 134 3 chr3 95783197 95783532 -63816251 - L1MB2 LINE L1 -2 6169 5781 8 1315 694 220 216 17 chr3 95783566 95783797 -63815986 - B4 SINE B4 -14 278 2 8 1315 703 131 164 0 chr3 95783866 95783988 -63815795 - B1_Mus1 SINE Alu -5 143 2 8 1315 916 217 85 0 chr3 95784012 95784201 -63815582 - B3 SINE B2 -11 205 1 8 1315 857 255 16 31 chr3 95784714 95784908 -63814875 - ID_B1 SINE B4 -17 207 17 8 1315 228 274 19 19 chr3 95784951 95785003 -63814780 + B1F1 SINE Alu 10 61 -88 8 1315 322 213 13 0 chr3 95785487 95785562 -63814221 + ID4_ SINE ID 5 80 -3 8 1315 791 312 88 13 chr3 95785933 95786306 -63813477 - MLT1H-int LTR MaLR -1008 401 1 8 1315 240 260 12 61 chr3 95786350 95786432 -63813351 - RLTR25A LTR ERVK -503 600 523 8 1315 616 163 0 0 chr3 95786370 95786468 -63813315 - B1_Mur4 SINE Alu -41 109 12 8 1315 1474 58 11 0 chr3 95787745 95787933 -63811850 - B2_Mm1t SINE B2 -3 190 1 8 1315 195 250 0 0 chr3 95787933 95787973 -63811810 - L2 LINE L2 -976 2443 2404 8 1315 982 202 11 11 chr3 95788273 95788463 -63811320 - B3A SINE B2 -5 193 4 8 1315 217 196 39 19 chr3 95788739 95788791 -63810992 - PB1D10 SINE Alu -31 86 34 8 1315 225 0 0 0 chr3 95789262 95789287 -63810496 + (TG)n Simple_repeat Simple_repeat 2 26 0 8 1315 312 322 62 29 chr3 95790571 95790715 -63809068 - MIRc SINE MIR -109 167 17 8 1315 225 197 237 66 chr3 95791264 95791340 -63808443 + B4A SINE B4 3 91 -201 8 1315 897 140 251 0 chr3 95793945 95794116 -63805667 - B3 SINE B2 0 216 3 8 1315 184 214 54 54 chr3 95794268 95794342 -63805441 - MIRb SINE MIR -192 76 3 8 1315 840 128 98 0 chr3 95795100 95795233 -63804550 + B1_Mur4 SINE Alu 1 146 -4 8 1315 327 25 0 0 chr3 95795845 95795885 -63803898 + (TG)n Simple_repeat Simple_repeat 1 40 0 8 1315 717 45 0 0 chr3 95797143 95797232 -63802551 + (GGGAA)n Simple_repeat Simple_repeat 1 89 0 8 1315 274 234 0 13 chr3 95799780 95799858 -63799925 + (CCG)n Simple_repeat Simple_repeat 3 79 0 8 1315 23 54 0 0 chr3 95799879 95799916 -63799867 + GC_rich Low_complexity Low_complexity 1 37 0 8 1315 484 149 17 40 chr3 95801081 95801215 -63798568 - B1_Mus2 SINE Alu 0 149 17 8 1315 342 0 0 0 chr3 95801941 95801979 -63797804 + (TC)n Simple_repeat Simple_repeat 1 38 0 8 1315 396 0 0 0 chr3 95801979 95802022 -63797761 + (CA)n Simple_repeat Simple_repeat 1 44 0 8 1315 305 283 65 0 chr3 95802371 95802463 -63797320 - MIR SINE MIR -49 213 116 8 1315 634 244 82 13 chr3 95802554 95802712 -63797071 + B3A SINE B2 15 183 -15 8 1315 916 114 50 7 chr3 95803101 95803242 -63796541 + B1_Mm SINE Alu 1 147 0 8 1315 213 121 0 0 chr3 95803243 95803276 -63796507 + (A)n Simple_repeat Simple_repeat 1 33 0 8 1315 262 306 0 0 chr3 95804384 95804446 -63795337 - RSINE1 SINE B4 -85 80 19 8 1315 595 137 323 0 chr3 95804512 95804636 -63795147 - URR1A DNA MER1_type 0 226 63 8 1315 800 174 163 0 chr3 95805873 95806057 -63793726 + B3 SINE B2 2 215 -1 8 1315 439 317 14 0 chr3 95806321 95806466 -63793317 + RSINE1 SINE B4 4 150 -15 8 1315 381 43 0 0 chr3 95806976 95807023 -63792760 + (CAA)n Simple_repeat Simple_repeat 2 48 0 8 1315 644 152 80 0 chr3 95808015 95808127 -63791656 + B1F2 SINE Alu 27 147 -2 8 1315 286 315 90 99 chr3 95808025 95808226 -63791557 + MT2B LTR ERVL 194 392 -209 8 1315 721 254 144 5 chr3 95808483 95808677 -63791106 + ID_B1 SINE B4 1 221 -3 8 1315 610 165 198 0 chr3 95808677 95808798 -63790985 + B1_Mur4 SINE Alu 1 145 -5 8 1315 359 321 45 18 chr3 95808976 95809087 -63790696 + ID_B1 SINE B4 79 192 -32 8 1315 363 274 59 42 chr3 95808989 95809107 -63790676 + B1_Mur1 SINE Alu 9 128 -21 8 1315 186 43 0 0 chr3 95809227 95809250 -63790533 + (TTTA)n Simple_repeat Simple_repeat 4 26 0 8 1315 622 197 82 0 chr3 95809250 95809397 -63790386 - B3 SINE B2 -56 160 2 9 1315 333 0 0 0 chr3 95810171 95810208 -63789575 + (CAGA)n Simple_repeat Simple_repeat 2 38 0 9 1315 824 188 14 14 chr3 95810323 95810469 -63789314 + B1_Mus2 SINE Alu 2 147 0 9 1315 642 248 132 15 chr3 95810497 95810770 -63789013 - MER33 DNA MER1_type -22 302 1 9 1315 756 254 11 0 chr3 95810891 95811068 -63788715 - B3A SINE B2 -18 180 2 9 1315 337 313 171 34 chr3 95811629 95811834 -63787949 + L1ME4a LINE L1 5660 5892 -232 9 1315 407 212 94 0 chr3 95811840 95811925 -63787858 + PB1D7 SINE Alu 3 95 -25 9 1315 408 219 166 150 chr3 95813048 95813202 -63786581 - B3A SINE B2 -2 196 36 9 1315 1463 69 20 0 chr3 95813202 95813406 -63786377 - L1Md_F2 LINE L1 -1 6581 6374 9 1315 408 219 166 150 chr3 95813406 95813444 -63786339 - B3A SINE B2 -163 35 1 9 164 328 262 187 0 chr3 95813530 95813637 -63786146 + L1MB8 LINE L1 5677 5803 -371 9 1316 239 184 0 75 chr3 95813637 95813690 -63786093 + MLT1E1 LTR MaLR 412 460 -194 9 1316 374 257 52 59 chr3 95813795 95813948 -63785835 + L1MB8 LINE L1 6027 6178 0 9 1316 773 216 39 13 chr3 95813961 95814160 -63785623 + B3A SINE B2 3 203 -13 9 1316 972 122 0 52 chr3 95814471 95814611 -63785172 + B1_Mur4 SINE Alu 4 139 -11 9 1316 231 36 0 0 chr3 95814611 95814639 -63785144 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 9 1316 972 122 0 52 chr3 95814639 95814653 -63785130 + B1_Mur4 SINE Alu 140 150 0 9 1316 180 0 0 0 chr3 95814661 95814681 -63785102 + (CCA)n Simple_repeat Simple_repeat 1 20 0 9 1316 1469 217 66 39 chr3 95814891 95815255 -63784528 - ORR1D1 LTR MaLR 0 374 1 9 1316 991 103 7 7 chr3 95815442 95815579 -63784204 + B1_Mus2 SINE Alu 10 146 -1 9 1316 573 224 0 33 chr3 95815625 95815745 -63784038 + PB1D7 SINE Alu 5 120 0 9 1316 240 298 148 69 chr3 95816013 95816114 -63783669 + PB1D10 SINE Alu 1 109 -8 9 1316 544 191 0 0 chr3 95817347 95817441 -63782342 + PB1 SINE Alu 34 127 0 9 1316 342 295 140 4 chr3 95817777 95818005 -63781778 - Lx8 LINE L1 -9 7464 7206 9 1316 458 232 101 0 chr3 95818003 95818125 -63781658 + Lx7 LINE L1 6565 6688 -1008 9 1316 483 18 0 0 chr3 95818178 95818234 -63781549 + (TTTA)n Simple_repeat Simple_repeat 2 57 0 9 1316 784 104 19 0 chr3 95818234 95818340 -63781443 - PB1D9 SINE Alu -11 109 2 9 1316 23 0 0 0 chr3 95818340 95818363 -63781420 + AT_rich Low_complexity Low_complexity 1 23 0 9 1316 254 266 62 0 chr3 95818938 95819002 -63780781 + MIRb SINE MIR 184 251 -17 9 1316 547 174 22 0 chr3 95819363 95819467 -63780316 + PB1D9 SINE Alu 1 105 -15 9 1316 393 102 0 0 chr3 95819468 95819527 -63780256 + (CAGT)n Simple_repeat Simple_repeat 4 62 0 9 1316 548 147 0 257 chr3 95819671 95819854 -63779929 - B1_Mur1 SINE Alu -12 137 2 9 1316 576 0 0 0 chr3 95819987 95820051 -63779732 + (TTTA)n Simple_repeat Simple_repeat 1 64 0 9 1316 365 139 0 51 chr3 95820053 95820119 -63779664 - B3 SINE B2 -131 64 2 9 1316 277 314 0 39 chr3 95820337 95820516 -63779267 + (GTGTG)n Simple_repeat Simple_repeat 4 175 0 9 1316 374 301 0 13 chr3 95820544 95820699 -63779084 + (GTGTG)n Simple_repeat Simple_repeat 4 156 0 9 1316 484 207 31 108 chr3 95820836 95820966 -63778817 - PB1D9 SINE Alu 0 120 1 9 1316 515 304 276 13 chr3 95821142 95821719 -63778064 + MER21B LTR ERV1 1 731 -132 9 1316 879 232 43 10 chr3 95822074 95822283 -63777500 + B3 SINE B2 1 216 0 9 1316 21 57 0 0 chr3 95822913 95822948 -63776835 + AT_rich Low_complexity Low_complexity 1 35 0 9 1316 275 0 29 0 chr3 95823135 95823170 -63776613 + (TC)n Simple_repeat Simple_repeat 1 36 0 9 1316 317 125 18 0 chr3 95824447 95824503 -63775280 + (TTTC)n Simple_repeat Simple_repeat 2 58 0 9 1316 935 150 153 11 chr3 95824967 95825156 -63774627 - B3 SINE B2 0 216 1 9 1316 395 289 94 0 chr3 95825377 95825505 -63774278 + B1_Mur1 SINE Alu 9 148 -1 9 1316 505 298 56 16 chr3 95825536 95825662 -63774121 + RSINE1 SINE B4 23 153 -12 9 1316 542 250 72 8 chr3 95826026 95826151 -63773632 - RSINE1 SINE B4 -31 134 2 9 1316 895 227 35 0 chr3 95826180 95826378 -63773405 + B3 SINE B2 1 205 -11 9 1316 503 229 110 0 chr3 95826400 95826518 -63773265 + B1_Mur1 SINE Alu 5 135 -14 9 1316 559 360 93 21 chr3 95826683 95827015 -63772768 + L2 LINE L2 1929 2284 -1135 9 1316 575 267 199 21 chr3 95827627 95827868 -63771915 + B4A SINE B4 1 284 -8 9 1316 822 248 40 0 chr3 95828095 95828293 -63771490 - B3 SINE B2 -5 211 6 9 1316 1012 197 35 5 chr3 95828304 95828503 -63771280 - B3 SINE B2 -11 205 1 9 1316 520 219 43 26 chr3 95828509 95828626 -63771157 + PB1D7 SINE Alu 1 119 -1 9 1316 212 282 24 0 chr3 95829803 95829888 -63769895 + (TA)n Simple_repeat Simple_repeat 2 88 0 9 1316 707 264 29 29 chr3 95830361 95830533 -63769250 - B3A SINE B2 -25 173 2 9 1316 1191 153 20 5 chr3 95830543 95830746 -63769037 + RMER6A LTR ERVK 121 326 -430 9 1316 350 302 83 0 chr3 95830934 95831030 -63768753 - PB1D10 SINE Alu -7 110 7 9 1316 303 289 7 110 chr3 95831233 95831369 -63768414 + MT2B LTR ERVL 142 263 -338 9 1316 680 171 8 25 chr3 95831269 95831389 -63768394 + B1_Mur1 SINE Alu 12 129 -20 9 1316 414 0 0 0 chr3 95831394 95831440 -63768343 + (CAAAA)n Simple_repeat Simple_repeat 2 47 0 9 1316 195 363 81 38 chr3 95831564 95831750 -63768033 + L2a LINE L2 2964 3157 -218 9 1316 252 376 18 0 chr3 95831827 95831936 -63767847 + L2a LINE L2 3316 3426 0 9 1316 572 314 0 129 chr3 95832133 95832334 -63767449 - B3A SINE B2 0 195 21 9 1316 280 155 127 0 chr3 95832413 95832484 -63767299 + B1_Mus2 SINE Alu 68 147 0 9 1316 564 56 0 0 chr3 95832703 95832775 -63767008 + (TTTCC)n Simple_repeat Simple_repeat 3 74 0 9 1316 1236 54 0 0 chr3 95832777 95832925 -63766858 - B1_Mus1 SINE Alu 0 148 1 9 1316 21 0 0 0 chr3 95832948 95832969 -63766814 + AT_rich Low_complexity Low_complexity 1 21 0 9 1316 279 104 0 0 chr3 95833756 95833804 -63765979 + (TG)n Simple_repeat Simple_repeat 1 48 0 9 1316 225 0 0 0 chr3 95833804 95833828 -63765955 + (GA)n Simple_repeat Simple_repeat 1 25 0 9 1316 473 250 64 7 chr3 95833847 95833988 -63765795 - RSINE1 SINE B4 -15 150 2 9 1316 27 29 0 0 chr3 95834001 95834035 -63765748 + AT_rich Low_complexity Low_complexity 1 34 0 9 1316 303 233 80 23 chr3 95834440 95834528 -63765255 - B1F SINE Alu -11 138 46 9 1316 414 301 187 26 chr3 95834616 95834889 -63764894 - MLT1E LTR MaLR -57 596 280 9 1316 736 301 34 48 chr3 95835224 95835517 -63764266 - B4A SINE B4 -1 291 3 9 1316 515 261 9 0 chr3 95835900 95836011 -63763772 + MTE2a LTR MaLR 18 129 -250 9 1316 784 206 139 0 chr3 95836135 95836329 -63763454 + ID_B1 SINE B4 2 222 -2 9 1316 315 0 0 0 chr3 95836370 95836405 -63763378 + (CA)n Simple_repeat Simple_repeat 2 36 0 9 1316 345 24 0 0 chr3 95836405 95836446 -63763337 + (GA)n Simple_repeat Simple_repeat 2 43 0 9 1316 294 237 43 49 chr3 95837458 95837562 -63762221 + PB1D7 SINE Alu 15 117 -3 9 1316 252 129 56 45 chr3 95838305 95838394 -63761389 + (TTATA)n Simple_repeat Simple_repeat 5 94 0 9 1316 318 367 135 49 chr3 95838549 95839039 -63760744 + Tigger9a DNA Tigger 9 540 -192 9 1316 1074 82 0 45 chr3 95839932 95840086 -63759697 + B1_Mus2 SINE Alu 1 147 0 9 1316 373 280 0 0 chr3 95840182 95840275 -63759508 - ID_B1 SINE B4 -55 169 77 9 1316 407 322 8 0 chr3 95840291 95840409 -63759374 + PB1D7 SINE Alu 2 120 0 9 1316 285 29 0 0 chr3 95840431 95840465 -63759318 + (CCAA)n Simple_repeat Simple_repeat 2 35 0 9 1316 755 208 104 0 chr3 95840477 95840621 -63759162 + RSINE1 SINE B4 3 161 -4 9 1316 532 177 10 20 chr3 95841484 95841582 -63758201 - PB1D7 SINE Alu -1 119 23 9 1316 319 223 254 18 chr3 95841485 95841599 -63758184 - ID_B1 SINE B4 0 224 84 9 1316 28 48 0 0 chr3 95841811 95841853 -63757930 + AT_rich Low_complexity Low_complexity 1 42 0 9 1316 1058 266 162 60 chr3 95842021 95842166 -63757617 + Lx8 LINE L1 6867 7048 -425 9 1316 589 296 6 12 chr3 95842166 95842327 -63757456 + RSINE1 SINE B4 2 161 -4 9 1316 1058 266 162 60 chr3 95842327 95842345 -63757438 + Lx8 LINE L1 7049 7069 -404 9 1316 195 69 0 0 chr3 95842345 95842374 -63757409 + (CAGA)n Simple_repeat Simple_repeat 4 32 0 9 1316 1058 266 162 60 chr3 95842374 95842758 -63757025 + Lx8 LINE L1 7070 7470 -3 9 1316 694 183 0 0 chr3 95842890 95843010 -63756773 + B1_Mur1 SINE Alu 30 149 0 9 1316 315 177 0 0 chr3 95844503 95844565 -63755218 + GA-rich Low_complexity Low_complexity 1 62 0 9 1316 660 260 17 29 chr3 95844571 95844745 -63755038 - B4A SINE B4 -119 173 2 9 1316 332 261 54 9 chr3 95844965 95845077 -63754706 - PB1D10 SINE Alu 0 117 1 9 1316 880 156 7 14 chr3 95845503 95845646 -63754137 + B1_Mm SINE Alu 1 142 -5 9 1316 223 257 104 52 chr3 95845798 95845913 -63753870 + B1_Mur2 SINE Alu 29 149 0 9 1316 323 255 132 0 chr3 95845942 95846048 -63753735 + B1F2 SINE Alu 1 120 -29 9 1316 268 275 158 0 chr3 95846048 95846062 -63753721 + ID_B1 SINE B4 82 220 -4 9 1316 942 203 26 0 chr3 95847620 95847812 -63751971 + B3 SINE B2 1 197 -19 9 1316 380 190 277 40 chr3 95847856 95848004 -63751779 - B2_Mm2 SINE B2 -11 184 2 9 1316 910 244 9 9 chr3 95848041 95848252 -63751531 + B3 SINE B2 2 212 -4 9 1316 703 256 10 40 chr3 95849030 95849229 -63750554 - B3A SINE B2 0 198 6 9 1316 23 0 0 0 chr3 95850612 95850635 -63749148 + AT_rich Low_complexity Low_complexity 1 23 0 9 1316 661 145 192 8 chr3 95850719 95850844 -63748939 - B1_Mur1 SINE Alu 0 149 2 1 1316 21 71 0 0 chr3 95851065 95851107 -63748676 + AT_rich Low_complexity Low_complexity 1 42 0 1 1316 358 322 128 58 chr3 95852464 95852932 -63746851 + L1MC5 LINE L1 6930 7430 -531 1 1316 226 181 26 77 chr3 95853031 95853109 -63746674 + L1ME2z LINE L1 6245 6318 -126 1 1316 525 191 0 0 chr3 95853125 95853230 -63746553 + (TAGA)n Simple_repeat Simple_repeat 3 107 0 1 1316 1087 177 113 0 chr3 95854246 95854449 -63745334 - URR1A DNA MER1_type 0 226 1 1 1316 458 252 173 13 chr3 95854698 95854935 -63744848 + L1MD1 LINE L1 5572 5846 -396 1 1316 670 245 112 21 chr3 95854989 95855231 -63744552 + L1MD1 LINE L1 5932 6195 -47 1 1316 22 56 0 0 chr3 95855508 95855544 -63744239 + AT_rich Low_complexity Low_complexity 1 36 0 1 1316 911 123 0 0 chr3 95855564 95855702 -63744081 - B1_Mus2 SINE Alu 0 147 10 1 1316 678 164 109 0 chr3 95855812 95855940 -63743843 - B1_Mur1 SINE Alu -7 142 1 1 1316 1229 110 11 27 chr3 95856347 95856534 -63743249 + B2_Mm2 SINE B2 2 185 -10 1 1316 922 210 54 0 chr3 95856634 95856839 -63742944 - B3 SINE B2 0 216 1 1 1316 492 291 0 0 chr3 95857082 95857209 -63742574 + RSINE1 SINE B4 3 129 -36 1 1316 549 256 141 81 chr3 95857375 95857678 -63742105 + Charlie21a DNA MER1_type 366 713 -500 1 1316 1124 59 0 0 chr3 95857678 95857813 -63741970 + B1_Mus2 SINE Alu 2 136 -11 1 1316 216 0 0 0 chr3 95857813 95857837 -63741946 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1 1316 549 256 141 81 chr3 95857837 95857873 -63741910 + Charlie21a DNA MER1_type 714 737 -476 1 1316 694 267 31 10 chr3 95857873 95858066 -63741717 - B3A SINE B2 0 198 2 1 1316 549 256 141 81 chr3 95858066 95858170 -63741613 + Charlie21a DNA MER1_type 738 837 -376 1 1316 302 286 40 10 chr3 95858316 95858415 -63741368 + PB1D10 SINE Alu 3 104 -13 1 1316 432 0 0 0 chr3 95858573 95858621 -63741162 + (TG)n Simple_repeat Simple_repeat 1 48 0 1 1316 490 312 142 12 chr3 95858636 95858876 -63740907 - B4A SINE B4 -21 271 1 1 1316 526 272 16 16 chr3 95858890 95859017 -63740766 - ID_B1 SINE B4 -11 213 87 1 1316 219 289 120 26 chr3 95859197 95859314 -63740469 - L2b LINE L2 -3 3423 3264 1 1316 270 280 10 88 chr3 95859356 95859458 -63740325 + PB1D9 SINE Alu 12 105 -15 1 1316 328 345 35 0 chr3 95859881 95859994 -63739789 + B1F2 SINE Alu 1 117 -32 1 1316 233 326 112 15 chr3 95859994 95860011 -63739772 + ID_B1 SINE B4 82 224 0 1 1316 24 0 0 0 chr3 95863001 95863025 -63736758 + AT_rich Low_complexity Low_complexity 1 24 0 1 1316 294 270 79 0 chr3 95863294 95863383 -63736400 - PB1D10 SINE Alu -5 112 17 1 1316 952 103 13 33 chr3 95863669 95863820 -63735963 + B1_Mus1 SINE Alu 1 148 0 1 1316 242 250 97 0 chr3 95863959 95864031 -63735752 + L1M5 LINE L1 5452 5530 -710 1 1316 272 330 50 25 chr3 95864296 95864417 -63735366 + L1M5 LINE L1 5654 5777 -417 1 1316 911 264 85 51 chr3 95864820 95865195 -63734588 - MLT1B LTR MaLR 0 390 3 1 1316 180 0 0 0 chr3 95865349 95865369 -63734414 + (ATG)n Simple_repeat Simple_repeat 1 20 0 1 1316 463 173 68 60 chr3 95865375 95865492 -63734291 - PB1D9 SINE Alu -2 118 1 1 1316 270 0 0 0 chr3 95865564 95865594 -63734189 + (TG)n Simple_repeat Simple_repeat 2 31 0 1 1316 1127 208 34 26 chr3 95865619 95865886 -63733897 - B4 SINE B4 -2 290 22 1 1316 251 28 28 0 chr3 95866314 95866350 -63733433 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 1 1316 22 35 0 0 chr3 95866411 95866440 -63733343 + AT_rich Low_complexity Low_complexity 1 29 0 1 1316 244 230 79 26 chr3 95866485 95866561 -63733222 + ID4_ SINE ID 2 81 -2 1 1316 365 284 121 0 chr3 95866697 95866838 -63732945 - MER5A1 DNA MER1_type -4 162 5 1 1316 730 225 6 59 chr3 95867208 95867378 -63732405 + RSINE1 SINE B4 5 165 0 1 1316 896 50 0 0 chr3 95867443 95867562 -63732221 + B2_Mm2 SINE B2 2 120 -75 1 1316 475 99 37 0 chr3 95867575 95867656 -63732127 + L1Md_F2 LINE L1 6499 6582 0 1 1316 509 152 258 17 chr3 95867784 95867904 -63731879 + B1_Mur2 SINE Alu 1 149 0 1 1316 497 259 109 0 chr3 95867909 95868056 -63731727 + MIR SINE MIR 29 191 -71 1 1316 858 201 68 39 chr3 95868181 95868388 -63731395 - B3 SINE B2 -3 213 1 1 1316 28 29 0 0 chr3 95868502 95868537 -63731246 + AT_rich Low_complexity Low_complexity 1 35 0 1 1316 755 148 70 0 chr3 95868958 95869086 -63730697 + B1_Mur4 SINE Alu 10 146 -4 1 1316 478 196 48 23 chr3 95869139 95869264 -63730519 - PB1D9 SINE Alu -20 127 2 1 1316 457 281 110 0 chr3 95869882 95870028 -63729755 + RSINE1 SINE B4 3 164 -1 1 1316 387 157 0 0 chr3 95870048 95870118 -63729665 + (TG)n Simple_repeat Simple_repeat 2 71 0 1 1316 1693 202 73 3 chr3 95870702 95871070 -63728713 + MTD LTR MaLR 12 405 -14 1 1316 695 212 14 14 chr3 95871186 95871325 -63728458 - B1_Mur1 SINE Alu -9 140 2 1 1316 25 0 0 0 chr3 95871335 95871360 -63728423 + AT_rich Low_complexity Low_complexity 1 25 0 1 1316 760 119 0 0 chr3 95871360 95871478 -63728305 - B1_Mur3 SINE Alu 0 149 32 1 1316 1229 48 0 0 chr3 95871666 95871812 -63727971 + B1_Mm SINE Alu 2 147 0 1 1316 4671 102 46 106 chr3 95872381 95873172 -63726611 - RMER17A2 LTR ERVK 0 906 169 1 1316 4142 151 36 113 chr3 95873172 95873404 -63726379 - RLTR13D6 LTR ERVK 0 902 668 1 1316 1006 131 0 0 chr3 95873404 95873549 -63726234 + B1_Mus1 SINE Alu 4 148 0 1 1316 4142 151 36 113 chr3 95873549 95874293 -63725490 - RLTR13D6 LTR ERVK -235 667 1 1 1316 4671 102 46 106 chr3 95874293 95874465 -63725318 - RMER17A2 LTR ERVK -738 168 1 1 1316 1627 164 44 18 chr3 95874465 95874906 -63724877 + RLTR11A2 LTR ERVK 48 527 0 1 1316 466 183 28 19 chr3 95874939 95875045 -63724738 - B3 SINE B2 -108 108 2 1 1316 933 201 107 15 chr3 95875422 95875619 -63724164 - B3 SINE B2 0 216 2 1 1316 670 241 89 20 chr3 95875662 95875865 -63723918 - ID_B1 SINE B4 -6 218 2 1 1316 214 170 41 41 chr3 95876162 95876211 -63723572 - B1F SINE Alu -5 144 96 1 1316 324 314 116 70 chr3 95876283 95876567 -63723216 - L2a LINE L2 -21 3405 3109 1 1316 219 188 20 40 chr3 95876585 95876635 -63723148 + B1F SINE Alu 96 144 -5 1 1316 204 200 0 0 chr3 95876752 95876792 -63722991 + (CGGT)n Simple_repeat Simple_repeat 1 40 0 1 1316 885 203 39 29 chr3 95876792 95877000 -63722783 + B3 SINE B2 3 212 -4 1 1316 195 139 0 0 chr3 95877432 95877468 -63722315 + (T)n Simple_repeat Simple_repeat 1 36 0 1 1316 23 92 0 0 chr3 95877497 95877562 -63722221 + AT_rich Low_complexity Low_complexity 1 65 0 1 1316 8145 79 22 5 chr3 95878030 95879169 -63720614 - MusHAL1 LINE L1 -603 2109 952 1 1316 744 187 240 16 chr3 95879194 95879308 -63720475 - Lx9 LINE L1 0 7644 7476 1 1316 339 65 0 0 chr3 95879308 95879354 -63720429 + (CA)n Simple_repeat Simple_repeat 2 47 0 1 1316 744 187 240 16 chr3 95879354 95879489 -63720294 - Lx9 LINE L1 -169 7475 7339 1 1316 812 248 14 42 chr3 95880015 95880230 -63719553 + B3 SINE B2 2 210 -6 1 1316 28 29 0 0 chr3 95880293 95880328 -63719455 + AT_rich Low_complexity Low_complexity 1 35 0 1 1316 225 94 0 0 chr3 95880429 95880461 -63719322 + (TCC)n Simple_repeat Simple_repeat 2 33 0 1 1316 180 0 0 0 chr3 95880463 95880483 -63719300 + (TTCA)n Simple_repeat Simple_repeat 4 23 0 1 1316 645 105 0 0 chr3 95880555 95880650 -63719133 + (TTC)n Simple_repeat Simple_repeat 2 96 0 1 1316 315 0 0 0 chr3 95880652 95880687 -63719096 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 1 1316 1101 77 6 0 chr3 95880687 95880843 -63718940 - B2_Mm2 SINE B2 -37 158 2 1 1316 582 180 10 20 chr3 95880843 95880945 -63718838 + Lx8 LINE L1 6921 7021 -452 1 1316 1525 78 0 0 chr3 95881483 95881674 -63718109 + B2_Mm1t SINE B2 1 191 -2 1 1316 4491 166 155 15 chr3 95881844 95882778 -63717005 + RMER1B Other Other 1 1065 -1 1 1316 576 297 0 0 chr3 95882794 95882939 -63716844 + RSINE1 SINE B4 1 145 -20 1 1316 251 206 65 54 chr3 95883175 95883295 -63716488 + PB1D7 SINE Alu 11 120 0 1 1316 279 130 0 0 chr3 95883357 95883411 -63716372 + (TG)n Simple_repeat Simple_repeat 2 55 0 1 1316 704 258 38 16 chr3 95883412 95883597 -63716186 - B3A SINE B2 -9 189 1 1 1316 276 302 41 10 chr3 95883631 95883728 -63716055 - B1F1 SINE Alu -49 100 1 1 1316 782 257 28 0 chr3 95883861 95884075 -63715708 + ID_B1 SINE B4 5 224 0 1 1316 1456 62 0 35 chr3 95884078 95884277 -63715506 + B2_Mm2 SINE B2 2 193 -2 1 1316 204 125 0 0 chr3 95884639 95884671 -63715112 + (GAAA)n Simple_repeat Simple_repeat 1 32 0 1 1316 667 211 0 81 chr3 95884794 95884942 -63714841 + B1_Mur2 SINE Alu 2 141 -8 1 1316 378 0 0 0 chr3 95884942 95884984 -63714799 + (CAA)n Simple_repeat Simple_repeat 3 44 0 1 1316 667 211 0 81 chr3 95884984 95884995 -63714788 + B1_Mur2 SINE Alu 142 148 -1 1 1316 774 263 0 6 chr3 95885076 95885256 -63714527 - B3A SINE B2 -18 180 2 1 1316 3434 35 2 0 chr3 95885272 95885667 -63714116 + MTA_Mm LTR MaLR 1 396 0 1 1316 677 239 52 38 chr3 95885985 95886198 -63713585 + B3 SINE B2 1 216 0 1 1316 23 0 0 0 chr3 95886583 95886606 -63713177 + AT_rich Low_complexity Low_complexity 1 23 0 1 1316 862 206 23 51 chr3 95887229 95887444 -63712339 + B3 SINE B2 5 213 -3 1 1316 248 131 0 21 chr3 95887556 95887603 -63712180 + CT-rich Low_complexity Low_complexity 4 49 0 1 1316 233 344 22 0 chr3 95887614 95887704 -63712079 - PB1D10 SINE Alu -15 102 11 1 1316 1032 226 0 19 chr3 95887986 95888194 -63711589 + B3 SINE B2 2 205 -11 1 1316 1852 129 75 12 chr3 95888203 95888549 -63711234 - RLTR9A LTR ERVK 0 368 1 1 1316 862 215 10 67 chr3 95888630 95888839 -63710944 + B3A SINE B2 2 198 0 1 1316 234 286 0 49 chr3 95888842 95888861 -63710922 + polypurine Low_complexity Low_complexity 3 20 0 1 1316 254 299 0 83 chr3 95888861 95888945 -63710838 + ID4 SINE ID 2 78 -5 1 1316 234 286 0 49 chr3 95888945 95889006 -63710777 + polypurine Low_complexity Low_complexity 21 79 0 1 1316 1395 148 0 0 chr3 95889365 95889574 -63710209 - B3 SINE B2 -7 209 1 1 1316 211 146 18 18 chr3 95889733 95889789 -63709994 + (TAA)n Simple_repeat Simple_repeat 1 56 0 1 1316 353 346 119 9 chr3 95889805 95890015 -63709768 - MIR SINE MIR -27 235 3 1 1316 348 83 0 0 chr3 95891185 95891233 -63708550 + (A)n Simple_repeat Simple_repeat 1 48 0 1 1316 2569 202 19 44 chr3 95891910 95892505 -63707278 - RLTR18 LTR ERVK -24 592 13 1 1316 227 291 21 88 chr3 95892834 95892848 -63706935 - Lx8 LINE L1 -16 7457 7444 1 1316 258 32 0 0 chr3 95892848 95892879 -63706904 + (TATG)n Simple_repeat Simple_repeat 2 32 0 1 1316 227 291 21 88 chr3 95892879 95893056 -63706727 - Lx8 LINE L1 -30 7443 7279 1 1316 279 79 0 0 chr3 95893091 95893129 -63706654 + (TG)n Simple_repeat Simple_repeat 1 38 0 1 1316 367 278 41 10 chr3 95893167 95893265 -63706518 - RSINE1 SINE B4 -63 102 2 1 1316 234 294 0 0 chr3 95893740 95893808 -63705975 - ID2 SINE ID -11 72 5 1 1316 550 75 0 0 chr3 95893843 95893923 -63705860 + B1_Mur4 SINE Alu 71 150 0 1 1316 225 0 0 0 chr3 95893927 95893952 -63705831 + (A)n Simple_repeat Simple_repeat 1 25 0 1 1316 742 223 134 15 chr3 95894108 95894308 -63705475 - B3 SINE B2 -4 212 13 1 1316 585 315 45 10 chr3 95894308 95894507 -63705276 - B4 SINE B4 -79 213 8 1 1316 413 265 93 12 chr3 95894678 95894850 -63704933 + L1MB2 LINE L1 5783 5968 -203 1 1316 218 55 17 83 chr3 95894858 95894918 -63704865 + (CAAA)n Simple_repeat Simple_repeat 2 57 0 1 1316 306 73 0 0 chr3 95895180 95895221 -63704562 + (TATG)n Simple_repeat Simple_repeat 3 43 0 1 1316 411 283 75 10 chr3 95895222 95895372 -63704411 - B3 SINE B2 -47 169 14 1 1316 755 245 80 110 chr3 95895368 95895804 -63703979 + RLTR23 LTR ERV1 8 430 0 1 1316 250 268 0 53 chr3 95895804 95895856 -63703927 - B3 SINE B2 -168 48 1 1 1316 391 295 49 37 chr3 95896562 95896724 -63703059 - L1MA6 LINE L1 -5 6295 6132 1 1316 360 0 0 0 chr3 95897010 95897050 -63702733 + (GA)n Simple_repeat Simple_repeat 2 41 0 1 1316 976 135 0 0 chr3 95897201 95897349 -63702434 - B1_Mus1 SINE Alu 0 148 1 1 1316 368 248 0 7 chr3 95897715 95897865 -63701918 + GA-rich Low_complexity Low_complexity 2 150 0 1 1316 3932 33 0 2 chr3 95898674 95899134 -63700649 - L1Md_F2 LINE L1 -2 6580 6122 1 1316 674 292 60 5 chr3 95899213 95899430 -63700353 + B4A SINE B4 1 229 -63 1 1316 423 56 0 0 chr3 95899653 95899707 -63700076 + (CA)n Simple_repeat Simple_repeat 2 55 0 1 1316 200 35 35 0 chr3 95900785 95900814 -63698969 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 1 1316 1014 101 0 0 chr3 95900816 95900955 -63698828 - B1_Mus1 SINE Alu -5 143 5 1 1316 283 284 62 0 chr3 95901153 95901234 -63698549 - B1F SINE Alu -58 91 6 1 1316 554 237 98 6 chr3 95903794 95903968 -63695815 - MLT1L LTR MaLR -3 607 418 1 1316 336 287 127 67 chr3 95903983 95904282 -63695501 - MLT1L LTR MaLR -272 338 22 1 1316 1054 221 98 52 chr3 95904283 95904608 -63695175 - MTD LTR MaLR -1 418 79 1 1316 239 203 145 0 chr3 95904790 95904859 -63694924 - MTD LTR MaLR -323 96 18 1 1316 373 200 59 0 chr3 95904972 95905057 -63694726 + B3 SINE B2 125 214 -2 1 1316 226 333 13 0 chr3 95905092 95905167 -63694616 - L1MB8 LINE L1 -354 6090 6015 1 1316 213 121 0 0 chr3 95905270 95905303 -63694480 + (TG)n Simple_repeat Simple_repeat 2 34 0 1 1316 950 211 54 5 chr3 95905380 95905585 -63694198 + B3 SINE B2 2 216 0 1 1316 588 236 12 51 chr3 95905597 95905852 -63693931 - L1MB8 LINE L1 -348 5830 5598 1 1316 387 0 0 0 chr3 95905925 95905968 -63693815 + (TCTA)n Simple_repeat Simple_repeat 4 46 0 1 1316 225 286 97 48 chr3 95906510 95906613 -63693170 - MIR SINE MIR -71 137 30 1 1316 401 50 17 0 chr3 95906858 95906918 -63692865 + (CAAAAA)n Simple_repeat Simple_repeat 3 63 0 1 1316 236 91 0 22 chr3 95908317 95908362 -63691421 + (CGGGG)n Simple_repeat Simple_repeat 5 48 0 1 1316 21 57 0 0 chr3 95908362 95908397 -63691386 + GC_rich Low_complexity Low_complexity 1 35 0 1 1316 23 33 0 0 chr3 95908685 95908715 -63691068 + GC_rich Low_complexity Low_complexity 1 30 0 1 1316 239 113 0 61 chr3 95909175 95909241 -63690542 + GA-rich Low_complexity Low_complexity 5 66 0 1 1316 465 298 49 0 chr3 95912062 95912220 -63687563 + ID_B1 SINE B4 31 208 -84 1 1316 601 179 163 0 chr3 95913193 95913316 -63686467 - B1_Mur3 SINE Alu -1 148 6 1 1316 405 274 25 25 chr3 95913220 95913340 -63686443 - ID_B1 SINE B4 -45 179 60 1 1316 198 0 0 0 chr3 95913898 95913920 -63685863 + (TTTAA)n Simple_repeat Simple_repeat 4 25 0 1 1316 240 317 44 80 chr3 95914035 95914148 -63685635 + PB1D10 SINE Alu 1 109 -8 1 1316 665 229 61 25 chr3 95914675 95914872 -63684911 - B3 SINE B2 -9 207 4 1 1316 1095 141 119 10 chr3 95915285 95915486 -63684297 + URR1A DNA MER1_type 2 224 -2 1 1316 538 281 39 68 chr3 95915842 95916048 -63683735 - ID_B1 SINE B4 -2 222 23 1 1316 437 274 0 10 chr3 95916752 95916855 -63682928 + PB1D10 SINE Alu 2 103 -14 1 1316 563 169 151 16 chr3 95916871 95916997 -63682786 + B1F SINE Alu 1 143 -6 1 1316 1054 97 90 11 chr3 95917777 95917955 -63681828 + URR1A DNA MER1_type 35 226 0 1 1316 232 208 0 36 chr3 95918033 95918088 -63681695 - ID4 SINE ID -3 80 28 1 1316 180 0 0 0 chr3 95918148 95918168 -63681615 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 1 1316 856 119 8 0 chr3 95918170 95918304 -63681479 - B1_Mur3 SINE Alu -6 143 9 1 1316 555 16 0 0 chr3 95919384 95919448 -63680335 + (TTCCC)n Simple_repeat Simple_repeat 4 67 0 1 1316 237 103 0 0 chr3 95919558 95919578 -63680205 + (T)n Simple_repeat Simple_repeat 1 20 0 1 1316 469 228 142 0 chr3 95919578 95919705 -63680078 - B1_Mus1 SINE Alu 0 148 4 1 1316 237 103 0 0 chr3 95919705 95919723 -63680060 + (T)n Simple_repeat Simple_repeat 1 18 0 1 1316 685 271 20 71 chr3 95921739 95922033 -63677750 + B4 SINE B4 2 280 -12 1 1316 734 44 92 50 chr3 95923133 95923252 -63676531 - B1_Mus1 SINE Alu -10 138 15 1 1316 259 314 39 0 chr3 95923370 95923472 -63676311 - MIRb SINE MIR -155 121 16 1 1316 21 0 0 0 chr3 95924029 95924050 -63675733 + AT_rich Low_complexity Low_complexity 1 21 0 1 1316 510 179 16 93 chr3 95924050 95924179 -63675604 - B1_Mur4 SINE Alu 0 150 32 1 1316 5779 231 43 49 chr3 95924418 95925817 -63673966 - RMER15-int LTR ERVL -2113 2886 1497 1 1316 1227 133 16 0 chr3 95926198 95926386 -63673397 - B2_Mm2 SINE B2 -3 192 2 1 1316 307 245 207 9 chr3 95926971 95927082 -63672701 - ID_B1 SINE B4 -13 211 79 1 1316 242 289 92 0 chr3 95928526 95928602 -63671181 - B3 SINE B2 -5 211 129 1 1316 472 152 13 0 chr3 95928614 95928693 -63671090 - B3 SINE B2 -136 80 1 1 1316 461 312 23 15 chr3 95929092 95929222 -63670561 - B1F1 SINE Alu -9 140 10 1 1316 204 67 0 0 chr3 95929236 95929266 -63670517 + (T)n Simple_repeat Simple_repeat 1 30 0 1 1316 552 303 28 0 chr3 95929876 95930021 -63669762 - B1F1 SINE Alu 0 149 1 1 1316 188 95 0 67 chr3 95930182 95930227 -63669556 + T-rich Low_complexity Low_complexity 1 42 0 1 1316 1199 41 0 20 chr3 95930229 95930379 -63669404 - B1_Mus2 SINE Alu 0 147 1 1 1316 744 179 36 0 chr3 95930671 95930811 -63668972 + B1_Mus2 SINE Alu 2 146 -1 1 1316 528 234 62 8 chr3 95930940 95931069 -63668714 + B1F SINE Alu 6 141 -8 1 1316 283 0 23 45 chr3 95931069 95931113 -63668670 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 1 1316 731 286 38 0 chr3 95931122 95931335 -63668448 + ID_B1 SINE B4 3 223 -1 1 1316 187 353 58 14 chr3 95931585 95931723 -63668060 - MIR SINE MIR -98 164 21 1 1316 254 276 66 15 chr3 95931873 95932009 -63667774 + MIRb SINE MIR 76 218 -50 1 1316 227 54 27 0 chr3 95932640 95932677 -63667106 + (TG)n Simple_repeat Simple_repeat 2 39 0 1 1316 1333 167 167 18 chr3 95933745 95934074 -63665709 - ORR1C2 LTR MaLR -2 382 5 1 1316 1553 136 56 28 chr3 95934451 95934739 -63665044 + Lx2A1 LINE L1 6710 7005 -3 1 1316 211 125 0 0 chr3 95934999 95935031 -63664752 + B3A SINE B2 9 40 -158 1 1316 600 135 261 0 chr3 95935033 95935144 -63664639 + B1_Mus1 SINE Alu 2 141 -7 1 1316 887 232 27 11 chr3 95935162 95935349 -63664434 + B3 SINE B2 27 216 0 1 1316 479 298 21 7 chr3 95936062 95936204 -63663579 + B1F1 SINE Alu 6 149 0 1 1316 243 350 56 24 chr3 95937048 95937174 -63662609 + L3 LINE CR1 4336 4465 -24 1 1316 180 111 0 0 chr3 95937781 95937808 -63661975 + (TCTG)n Simple_repeat Simple_repeat 1 27 0 1 1316 567 216 39 31 chr3 95937808 95937937 -63661846 - B1_Mur2 SINE Alu -13 136 7 1 1316 307 257 114 0 chr3 95938143 95938248 -63661535 - PB1D10 SINE Alu 0 117 1 1 1316 1745 16 0 0 chr3 95939578 95939770 -63660013 + B2_Mm1t SINE B2 2 193 0 1 1316 492 254 17 8 chr3 95939825 95939944 -63659839 + PB1D7 SINE Alu 1 120 0 1 1316 892 151 189 6 chr3 95941563 95941743 -63658040 + B3 SINE B2 4 216 0 1 1316 644 162 72 0 chr3 95941849 95941960 -63657823 + PB1D9 SINE Alu 2 120 0 1 1316 477 350 40 47 chr3 95942487 95942936 -63656847 - L2a LINE L2 -1 3374 2934 1 1316 282 288 14 0 chr3 95943284 95943357 -63656426 - B3 SINE B2 -25 191 118 1 1316 438 276 38 0 chr3 95944134 95944239 -63655544 - PB1D10 SINE Alu -8 109 1 1 1317 2187 69 3 7 chr3 95945719 95946010 -63653773 - L1Md_F2 LINE L1 -1 6581 6292 1 1317 878 199 6 66 chr3 95946384 95946551 -63653232 + RSINE1 SINE B4 9 165 0 1 1317 792 184 0 87 chr3 95946670 95946831 -63652952 + B1_Mur1 SINE Alu 3 149 0 1 1317 920 234 39 34 chr3 95946845 95947053 -63652730 + B3 SINE B2 2 210 -6 1 1317 629 324 14 14 chr3 95947568 95947775 -63652008 - MER20 DNA MER1_type -7 212 6 1 1317 495 333 0 15 chr3 95947837 95947974 -63651809 + ID_B1 SINE B4 77 211 -13 1 1317 271 228 35 0 chr3 95948009 95948066 -63651717 + 4.5SRNA scRNA scRNA 26 84 -10 1 1317 432 205 0 0 chr3 95948017 95948095 -63651688 + PB1D10 SINE Alu 38 115 -2 1 1317 217 222 0 0 chr3 95948789 95948825 -63650958 + ID2 SINE ID 48 83 0 1 1317 566 324 27 7 chr3 95949362 95949508 -63650275 - RSINE1 SINE B4 -13 152 4 1 1317 210 215 0 37 chr3 95949528 95949610 -63650173 + C-rich Low_complexity Low_complexity 2 80 0 1 1317 519 314 24 0 chr3 95949610 95949734 -63650049 - B1F SINE Alu -22 127 1 1 1317 550 270 40 0 chr3 95949790 95949916 -63649867 - RSINE1 SINE B4 -8 157 27 1 1317 253 300 120 23 chr3 95950157 95950290 -63649493 + MER58A DNA MER1_type 61 206 -18 1 1317 205 250 0 0 chr3 95950354 95950394 -63649389 + polypyrimidine Low_complexity Low_complexity 1 40 0 1 1317 874 269 16 0 chr3 95950433 95950626 -63649157 - B3A SINE B2 -2 196 1 1 1317 254 316 25 62 chr3 95950854 95950935 -63648848 + B4A SINE B4 1 78 -214 1 1317 432 0 0 0 chr3 95950945 95950993 -63648790 + (CA)n Simple_repeat Simple_repeat 2 49 0 1 1317 856 258 16 16 chr3 95951031 95951224 -63648559 + B3A SINE B2 3 195 -3 1 1317 895 104 26 59 chr3 95951307 95951460 -63648323 - B1_Mur4 SINE Alu -2 148 1 1 1317 244 220 33 17 chr3 95951490 95951550 -63648233 - MER66B LTR ERV1 -376 110 50 1 1317 685 203 30 0 chr3 95952144 95952277 -63647506 + B3 SINE B2 79 215 -1 1 1317 861 137 12 104 chr3 95952291 95952454 -63647329 + B1_Mur4 SINE Alu 2 149 -1 1 1317 981 230 18 46 chr3 95952830 95953049 -63646734 - ID_B1 SINE B4 0 224 12 1 1317 367 253 84 0 chr3 95953288 95953371 -63646412 - PB1D9 SINE Alu -30 90 1 1 1317 193 345 52 39 chr3 95953867 95954021 -63645762 - L2 LINE L2 -944 2475 2320 1 1317 501 291 110 0 chr3 95954318 95954445 -63645338 + ID_B1 SINE B4 84 224 0 1 1317 810 125 7 49 chr3 95954450 95954593 -63645190 + B1_Mur2 SINE Alu 5 141 -8 1 1317 368 284 81 40 chr3 95954934 95955033 -63644750 - RSINE1 SINE B4 -61 104 2 1 1317 630 262 68 37 chr3 95955547 95955737 -63644046 + B3A SINE B2 2 197 -1 1 1317 459 0 0 0 chr3 95956901 95956952 -63642831 + (TG)n Simple_repeat Simple_repeat 2 52 0 1 1317 457 207 52 35 chr3 95957046 95957161 -63642622 + PB1D10 SINE Alu 1 117 0 1 1317 466 274 19 10 chr3 95957762 95957865 -63641918 + PB1D10 SINE Alu 1 104 -13 1 1317 291 28 0 0 chr3 95957865 95957901 -63641882 + (CAGA)n Simple_repeat Simple_repeat 1 36 0 1 1317 1497 204 157 6 chr3 95958193 95958557 -63641226 - MTD LTR MaLR 0 419 1 1 1317 28 0 0 0 chr3 95960616 95960644 -63639139 + AT_rich Low_complexity Low_complexity 1 28 0 1 1317 23 68 0 0 chr3 95961050 95961094 -63638689 + AT_rich Low_complexity Low_complexity 1 44 0 1 1317 680 179 23 47 chr3 95961853 95961982 -63637801 - B1F SINE Alu -23 126 1 1 1317 352 258 10 31 chr3 95962064 95962160 -63637623 - PB1D10 SINE Alu 0 117 24 1 1317 521 281 50 75 chr3 95962171 95962490 -63637293 - MER96B DNA hAT -104 313 3 1 1317 1108 36 72 0 chr3 95963426 95963564 -63636219 + B1_Mus1 SINE Alu 1 148 0 1 1317 189 213 0 0 chr3 95966399 95966446 -63633337 + GA-rich Low_complexity Low_complexity 2 48 0 1 1317 315 213 12 107 chr3 95967174 95967258 -63632525 + PB1D10 SINE Alu 29 104 -13 1 1317 213 253 62 12 chr3 95967917 95967997 -63631786 + MIR3 SINE MIR 124 207 -1 1 1317 270 308 69 91 chr3 95969343 95969368 -63630415 - B4A SINE B4 -44 248 143 1 1317 534 177 109 51 chr3 95969368 95969505 -63630278 - B1_Mur3 SINE Alu 0 149 5 1 1317 270 308 69 91 chr3 95969505 95969518 -63630265 - B4A SINE B4 -44 142 78 1 1317 527 232 0 35 chr3 95969546 95969662 -63630121 + PB1D10 SINE Alu 5 116 -1 1 1317 22 0 0 0 chr3 95969869 95969891 -63629892 + AT_rich Low_complexity Low_complexity 1 22 0 1 1317 748 140 0 17 chr3 95969891 95970007 -63629776 - B1_Mus2 SINE Alu 0 147 34 1 1317 573 226 58 93 chr3 95970023 95970228 -63629555 - B3A SINE B2 0 198 1 1 1317 280 104 38 38 chr3 95970240 95970256 -63629527 + T-rich Low_complexity Low_complexity 65 80 0 1 1317 872 177 7 7 chr3 95970256 95970404 -63629379 - B1_Mus1 SINE Alu 0 148 1 1 1317 280 104 38 38 chr3 95970404 95970467 -63629316 + T-rich Low_complexity Low_complexity 2 64 0 1 1317 841 179 21 7 chr3 95970467 95970608 -63629175 - B1_Mur2 SINE Alu -1 148 6 1 1317 4627 45 19 7 chr3 95970618 95971193 -63628590 - L1Md_F2 LINE L1 -1 6581 6000 1 1317 2740 95 107 21 chr3 95971218 95971323 -63628460 - RMER4A LTR ERVK 0 466 347 1 1317 213 39 0 0 chr3 95971323 95971349 -63628434 + (GA)n Simple_repeat Simple_repeat 1 26 0 1 1317 2740 95 107 21 chr3 95971349 95971672 -63628111 - RMER4A LTR ERVK -120 346 2 1 1317 707 265 71 76 chr3 95973383 95973690 -63626093 - B4 SINE B4 -5 287 2 1 1317 635 142 164 8 chr3 95974787 95974915 -63624868 + B1_Mus1 SINE Alu 1 148 0 1 1317 569 135 45 15 chr3 95975859 95975991 -63623792 - B1_Mur3 SINE Alu -6 143 1 1 1317 28 0 0 0 chr3 95976382 95976410 -63623373 + GC_rich Low_complexity Low_complexity 1 28 0 1 1317 591 208 8 23 chr3 95977203 95977331 -63622452 - B1_Mus1 SINE Alu -22 126 1 1 1317 189 26 51 26 chr3 95977407 95977446 -63622337 + (TTTTG)n Simple_repeat Simple_repeat 2 41 0 1 1317 512 170 50 0 chr3 95978697 95978797 -63620986 - PB1D9 SINE Alu 0 120 16 1 1317 954 67 97 0 chr3 95979241 95979375 -63620408 - B1_Mus2 SINE Alu 0 147 1 1 1317 1389 70 26 11 chr3 95979551 95979580 -63620203 - B2_Mm1t SINE B2 0 193 161 1 1317 192 77 0 0 chr3 95979580 95979606 -63620177 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 1 1317 1389 70 26 11 chr3 95979606 95979765 -63620018 - B2_Mm1t SINE B2 -33 160 2 1 1317 649 199 55 34 chr3 95979767 95979913 -63619870 - B1_Mur1 SINE Alu 0 149 1 1 1317 266 0 29 0 chr3 95979957 95979991 -63619792 + (TTTTG)n Simple_repeat Simple_repeat 1 35 0 1 1317 395 298 83 15 chr3 95979994 95980127 -63619656 - ID_B1 SINE B4 -16 208 67 1 1317 180 0 0 0 chr3 95981900 95981920 -63617863 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 1 1317 414 153 200 0 chr3 95981927 95982012 -63617771 - B1_Mus2 SINE Alu -25 122 21 1 1317 502 196 102 9 chr3 95982337 95982445 -63617338 + B1_Mur2 SINE Alu 1 118 -31 1 1317 1212 68 0 0 chr3 95982685 95982831 -63616952 + B1_Mus1 SINE Alu 1 146 -2 1 1317 291 243 270 0 chr3 95983234 95983345 -63616438 - B1F1 SINE Alu -8 141 1 1 1317 663 324 148 54 chr3 95983378 95984008 -63615775 + MamRep605 Unknown Unknown 126 814 -62 1 1317 450 0 0 0 chr3 95984371 95984421 -63615362 + (TATG)n Simple_repeat Simple_repeat 2 51 0 1 1317 210 278 0 0 chr3 95984979 95985033 -63614750 + C-rich Low_complexity Low_complexity 1 54 0 1 1317 214 147 0 0 chr3 95985340 95985374 -63614409 + (TGGGGG)n Simple_repeat Simple_repeat 6 39 0 1 1317 191 239 15 0 chr3 95985421 95985488 -63614295 + (TA)n Simple_repeat Simple_repeat 2 69 0 1 1317 369 0 0 0 chr3 95986976 95987017 -63612766 + (TG)n Simple_repeat Simple_repeat 1 41 0 1 1317 228 274 82 75 chr3 95987685 95987819 -63611964 - MIR SINE MIR -75 187 53 1 1317 222 37 0 0 chr3 95988656 95988683 -63611100 + (CCCCCT)n Simple_repeat Simple_repeat 2 28 0 1 1317 180 27 26 51 chr3 95989637 95989676 -63610107 + (CCCCCT)n Simple_repeat Simple_repeat 3 40 0 1 1317 230 160 20 0 chr3 95990053 95990103 -63609680 + C-rich Low_complexity Low_complexity 5 55 0 1 1317 333 0 0 0 chr3 95990103 95990140 -63609643 + (TCTG)n Simple_repeat Simple_repeat 4 40 0 1 1317 595 244 16 0 chr3 95990363 95990486 -63609297 + B1_Mur1 SINE Alu 16 140 -9 1 1317 201 254 0 43 chr3 95990602 95990672 -63609111 + GA-rich Low_complexity Low_complexity 2 68 0 1 1317 419 274 47 31 chr3 95991514 95991642 -63608141 - B1_Mur1 SINE Alu -2 147 18 1 1317 270 289 109 72 chr3 95991528 95991666 -63608117 - B4 SINE B4 -69 223 81 1 1317 381 206 31 52 chr3 95991678 95991775 -63608008 - PB1D9 SINE Alu 0 120 26 1 1317 333 0 0 0 chr3 95992412 95992449 -63607334 + (TGGGGG)n Simple_repeat Simple_repeat 4 40 0 1 1317 363 278 0 85 chr3 95995031 95995137 -63604646 + PB1D10 SINE Alu 13 109 -8 1 1317 407 307 33 112 chr3 95995144 95995386 -63604397 + ID_B1 SINE B4 2 224 0 1 1317 750 253 35 40 chr3 95995406 95995604 -63604179 + B3A SINE B2 16 212 -4 1 1317 944 136 0 20 chr3 95995755 95995905 -63603878 - B1_Mus2 SINE Alu 0 147 1 1 1317 291 286 0 0 chr3 95995955 95996053 -63603730 + GA-rich Low_complexity Low_complexity 1 98 0 1 1317 204 125 0 0 chr3 95998456 95998488 -63601295 + (TG)n Simple_repeat Simple_repeat 2 33 0 1 1317 948 207 78 0 chr3 95999652 95999845 -63599938 - B3 SINE B2 -8 208 1 1 1317 1001 143 0 0 chr3 96000000 96000147 -63599636 - B2_Mm2 SINE B2 -39 156 10 1 1317 228 239 105 74 chr3 96000335 96000430 -63599353 + RSINE1 SINE B4 44 141 -24 2 1317 375 198 88 0 chr3 96001796 96001887 -63597896 - ID_B1 SINE B4 -20 204 106 3 1317 234 265 146 10 chr3 96001887 96001899 -63597884 - B1F SINE Alu -20 129 13 4 1317 2906 12 0 0 chr3 96002404 96002726 -63597057 + RLTRETN_Mm LTR ERVK 1 322 0 5 1317 388 300 160 56 chr3 96002726 96002860 -63596923 - RMER10A LTR ERVL -29 413 258 6 1317 732 86 0 0 chr3 96002860 96002965 -63596818 + (GA)n Simple_repeat Simple_repeat 2 106 0 7 1317 388 300 160 56 chr3 96002965 96003204 -63596579 - RMER10A LTR ERVL -185 257 1 6 1317 538 191 53 35 chr3 96003239 96003353 -63596430 - B1_Mus1 SINE Alu -27 121 6 8 1317 320 253 138 108 chr3 96003704 96004035 -63595748 + RMER10A LTR ERVL 18 367 -75 9 1317 360 0 0 0 chr3 96004035 96004075 -63595708 + (TC)n Simple_repeat Simple_repeat 1 40 0 1 1317 320 253 138 108 chr3 96004075 96004142 -63595641 + RMER10A LTR ERVL 368 428 -14 9 1317 4451 14 2 2 chr3 96004167 96004660 -63595123 - MT2_Mm LTR ERVL 0 493 1 1 1317 319 0 0 0 chr3 96004660 96004698 -63595085 - MERVL-int LTR ERVL 0 5485 5448 1 1317 395 167 46 35 chr3 96004698 96004785 -63594998 - ORR1A3-int LTR MaLR -1323 640 553 1 1317 48496 15 6 0 chr3 96004785 96010111 -63589672 - MERVL-int LTR ERVL -125 5360 1 1 1317 4451 14 2 2 chr3 96010111 96010604 -63589179 - MT2_Mm LTR ERVL 0 493 1 1 1317 2308 157 130 51 chr3 96010604 96011324 -63588459 - RMER19B LTR ERVK -38 864 1 1 1317 302 271 74 25 chr3 96011470 96011591 -63588192 - L1MEe LINE L1 -4022 832 706 1 1317 674 159 127 0 chr3 96011594 96011720 -63588063 - B1_Mur4 SINE Alu -6 144 3 1 1317 23 33 0 0 chr3 96012009 96012039 -63587744 + AT_rich Low_complexity Low_complexity 1 30 0 1 1317 581 219 25 0 chr3 96012227 96012346 -63587437 - B1F2 SINE Alu -6 143 22 1 1317 362 294 21 42 chr3 96012346 96012369 -63587414 - ID_B1 SINE B4 -6 218 80 1 1317 998 211 15 10 chr3 96012484 96012685 -63587098 - B3 SINE B2 -12 204 3 1 1317 699 269 129 44 chr3 96012864 96013159 -63586624 + MLT1A0 LTR MaLR 19 338 -27 2 1317 373 300 0 19 chr3 96014694 96014809 -63584974 - PB1 SINE Alu -2 125 15 2 1317 282 29 0 0 chr3 96014951 96014986 -63584797 + (TG)n Simple_repeat Simple_repeat 2 36 0 2 1317 1342 87 11 11 chr3 96015011 96015196 -63584587 + B2_Mm1t SINE B2 1 185 -8 2 1317 216 0 0 0 chr3 96015197 96015221 -63584562 + (TG)n Simple_repeat Simple_repeat 2 25 0 2 1317 523 238 47 47 chr3 96015228 96015356 -63584427 + B1_Mur1 SINE Alu 6 133 -16 2 1317 670 152 19 0 chr3 96015405 96015510 -63584273 - B1_Mus2 SINE Alu -21 126 20 2 1317 361 204 62 80 chr3 96015411 96015523 -63584260 - MT2B LTR ERVL -323 278 169 2 1317 502 207 124 0 chr3 96015556 96015677 -63584106 + MER2 DNA MER2_type 86 221 -124 2 1317 675 226 0 27 chr3 96015690 96015840 -63583943 + ID_B1 SINE B4 78 223 -1 2 1317 2274 124 48 108 chr3 96015905 96016340 -63583443 - MTC LTR MaLR 0 421 13 3 1317 1458 154 77 0 chr3 96016418 96016678 -63583105 - RLTR28 LTR ERVL -16 508 229 3 1317 560 236 0 0 chr3 96017027 96017137 -63582646 - RMER15 LTR ERVL -21 554 445 3 1317 1198 158 37 0 chr3 96017869 96018059 -63581724 - RMER15 LTR ERVL -154 421 225 3 1317 330 311 67 88 chr3 96018319 96018559 -63581224 + RLTR23 LTR ERV1 196 430 0 3 1317 856 188 12 12 chr3 96018559 96018721 -63581062 - RMER15 LTR ERVL -413 162 1 3 1317 4536 111 83 101 chr3 96019510 96019920 -63579863 - RMER17A2 LTR ERVK 0 906 564 3 1317 1700 26 0 0 chr3 96019920 96020113 -63579670 + B2_Mm1a SINE B2 1 193 0 3 1317 4536 111 83 101 chr3 96020113 96020342 -63579441 - RMER17A2 LTR ERVK -343 563 294 3 1317 279 0 0 0 chr3 96020342 96020373 -63579410 + (GA)n Simple_repeat Simple_repeat 1 31 0 3 1317 4536 111 83 101 chr3 96020373 96020654 -63579129 - RMER17A2 LTR ERVK -613 293 1 3 1317 216 327 139 0 chr3 96020999 96021100 -63578683 - L2a LINE L2 -262 3164 3050 3 1317 252 0 0 0 chr3 96021103 96021131 -63578652 + (TTATA)n Simple_repeat Simple_repeat 4 31 0 3 1317 225 304 8 67 chr3 96021207 96021327 -63578456 + PB1D10 SINE Alu 5 117 0 3 1317 316 113 0 46 chr3 96021705 96021757 -63578026 + (TTTA)n Simple_repeat Simple_repeat 2 51 0 4 1317 1288 34 0 0 chr3 96021757 96021904 -63577879 - B1_Mm SINE Alu 0 147 1 4 1317 316 113 0 46 chr3 96021904 96021916 -63577867 + (TTTA)n Simple_repeat Simple_repeat 2 13 0 4 1317 944 71 69 31 chr3 96026377 96026536 -63573247 - L1Md_F2 LINE L1 -2 6580 6416 4 1317 23 54 0 0 chr3 96026546 96026583 -63573200 + AT_rich Low_complexity Low_complexity 1 37 0 4 1317 800 189 92 85 chr3 96026710 96027057 -63572726 + MT2A LTR ERVL 51 483 -118 4 1317 338 251 132 53 chr3 96027514 96027703 -63572080 + Charlie23a DNA MER1_type 36 239 -100 4 1317 217 254 88 15 chr3 96027797 96027865 -63571918 + ID4_ SINE ID 1 73 -10 4 1317 468 257 17 17 chr3 96028038 96028153 -63571630 - MIR SINE MIR -32 230 116 4 1317 371 326 72 16 chr3 96028778 96028971 -63570812 - MIR SINE MIR -13 249 46 4 1317 340 274 25 41 chr3 96028973 96029095 -63570688 - PB1D9 SINE Alu 0 120 1 5 1317 228 269 47 82 chr3 96030073 96030158 -63569625 + PB1D10 SINE Alu 1 82 -35 5 1317 482 276 76 61 chr3 96030190 96030387 -63569396 + ID_B1 SINE B4 24 223 -1 5 1317 517 120 186 57 chr3 96030267 96030391 -63569392 + B1_Mur2 SINE Alu 9 148 -1 5 1317 852 251 60 90 chr3 96030646 96031116 -63568667 - RLTR11B LTR ERVK -55 473 1 5 1317 624 209 233 10 chr3 96031136 96031329 -63568454 + ORR1C2 LTR MaLR 5 240 -144 5 1317 865 273 50 147 chr3 96031348 96032030 -63567753 + RLTR18 LTR ERVK 1 616 0 5 1317 420 322 0 17 chr3 96032030 96032147 -63567636 + B1F SINE Alu 34 148 -1 5 1317 27 49 0 0 chr3 96032162 96032203 -63567580 + AT_rich Low_complexity Low_complexity 1 41 0 5 1317 396 250 44 9 chr3 96032220 96032333 -63567450 + PB1D7 SINE Alu 1 117 -3 5 1317 211 53 50 50 chr3 96032342 96032402 -63567381 + A-rich Low_complexity Low_complexity 2 61 0 6 1317 219 310 83 74 chr3 96032784 96032842 -63566941 - PB1D10 SINE Alu 0 117 52 6 1317 1670 140 144 32 chr3 96032842 96033182 -63566601 + ORR1C1 LTR MaLR 1 378 0 6 1317 219 310 83 74 chr3 96033182 96033231 -63566552 - PB1D10 SINE Alu -66 51 10 6 1317 423 0 0 0 chr3 96033239 96033286 -63566497 + (CA)n Simple_repeat Simple_repeat 1 47 0 6 1317 630 181 289 0 chr3 96033294 96033460 -63566323 - B3 SINE B2 -2 214 1 6 1317 579 288 33 71 chr3 96033669 96033765 -63566018 + ID SINE ID 1 89 -135 6 1317 477 220 59 10 chr3 96033765 96033866 -63565917 + PB1D10 SINE Alu 4 109 -8 6 1317 773 245 0 0 chr3 96033886 96034033 -63565750 + RSINE1 SINE B4 11 157 -8 6 1317 687 81 0 0 chr3 96034035 96034134 -63565649 + (CA)n Simple_repeat Simple_repeat 1 99 0 6 1317 222 316 17 17 chr3 96034163 96034221 -63565562 + ID4_ SINE ID 22 79 -4 6 1317 286 348 54 87 chr3 96035978 96036220 -63563563 + MLT1C LTR MaLR 77 310 -157 7 1317 2518 135 34 32 chr3 96036293 96036705 -63563078 - MTC LTR MaLR -8 413 1 7 1317 444 247 97 26 chr3 96037180 96037334 -63562449 - MLT1D LTR MaLR -16 489 325 7 1317 638 293 23 51 chr3 96037406 96037622 -63562161 - MLT1D LTR MaLR -295 210 1 7 1317 2267 191 83 14 chr3 96038489 96038984 -63560799 + RMER5 LTR ERV1 1 529 -5 7 1317 201 234 180 31 chr3 96039206 96039334 -63560449 - MIRc SINE MIR -113 155 9 7 1317 615 275 63 9 chr3 96039824 96040027 -63559756 - B3A SINE B2 0 216 1 7 1317 903 209 56 91 chr3 96040286 96040518 -63559265 - URR1B DNA MER1_type 0 225 2 7 1317 384 22 0 0 chr3 96040784 96040829 -63558954 + (TATG)n Simple_repeat Simple_repeat 4 48 0 7 1317 22 0 0 0 chr3 96043184 96043206 -63556577 + GC_rich Low_complexity Low_complexity 1 22 0 7 1317 189 121 0 0 chr3 96043248 96043281 -63556502 + (CCCCAG)n Simple_repeat Simple_repeat 2 34 0 7 1317 186 71 0 0 chr3 96045262 96045290 -63554493 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 8 1317 1157 88 0 0 chr3 96045290 96045438 -63554345 - B1_Mus1 SINE Alu 0 148 1 8 1317 540 221 112 35 chr3 96045742 96045918 -63553865 - B3 SINE B2 -15 180 2 8 1317 1526 178 70 29 chr3 96046229 96046588 -63553195 + MTB_Mm LTR MaLR 1 385 -15 8 1317 239 311 0 63 chr3 96046713 96046792 -63552991 + MLT1D LTR MaLR 125 198 -307 8 1317 502 195 177 0 chr3 96046818 96046931 -63552852 - MT2A LTR ERVL -400 133 1 8 1317 224 294 0 19 chr3 96048518 96048570 -63551213 - ID4_ SINE ID -25 58 8 8 1317 189 121 0 0 chr3 96050391 96050424 -63549359 + (CTGGGG)n Simple_repeat Simple_repeat 2 34 0 8 1317 22 0 0 0 chr3 96050466 96050488 -63549295 + GC_rich Low_complexity Low_complexity 1 22 0 8 1317 217 182 12 72 chr3 96050576 96050659 -63549124 + (CGGGG)n Simple_repeat Simple_repeat 2 79 0 8 1317 25 24 0 23 chr3 96052178 96052201 -63547582 + AT_rich Low_complexity Low_complexity 1 23 0 9 1317 777 193 118 27 chr3 96052201 96052387 -63547396 - B3 SINE B2 -11 205 3 9 1317 25 24 0 23 chr3 96052387 96052406 -63547377 + AT_rich Low_complexity Low_complexity 1 19 0 9 1317 3702 76 2 4 chr3 96053878 96054366 -63545417 - RLTR1C LTR ERV1 -16 487 1 9 1317 611 194 137 0 chr3 96054417 96054541 -63545242 + B1_Mus2 SINE Alu 1 141 -6 9 1317 868 212 188 9 chr3 96054566 96054790 -63544993 - MTEa LTR MaLR -103 276 13 9 1317 243 0 0 0 chr3 96055677 96055704 -63544079 + (TAGA)n Simple_repeat Simple_repeat 3 29 0 9 1317 619 250 27 14 chr3 96055890 96056036 -63543747 + RSINE1 SINE B4 14 161 -4 9 1317 44 20 0 0 chr3 96056444 96056495 -63543288 + AT_rich Low_complexity Low_complexity 1 51 0 9 1317 270 305 169 29 chr3 96056502 96056745 -63543038 + L1M5 LINE L1 5411 5687 -507 9 1317 4250 120 46 1 chr3 96056945 96057594 -63542189 + RLTR33 LTR ERVK 1 678 0 1 1317 499 271 212 5 chr3 96057613 96057835 -63541948 - MLT1A0 LTR MaLR -8 357 90 1 1317 1711 226 52 37 chr3 96057837 96058241 -63541542 + MTD LTR MaLR 2 411 -8 1 1317 457 293 0 25 chr3 96058390 96058509 -63541274 + PB1D10 SINE Alu 2 117 0 1 1317 29 0 0 0 chr3 96058555 96058584 -63541199 + AT_rich Low_complexity Low_complexity 1 29 0 1 1317 331 93 73 18 chr3 96058899 96058954 -63540829 - MTC LTR MaLR -18 401 344 1 1317 1301 117 15 0 chr3 96058950 96059146 -63540637 - MTC LTR MaLR -220 201 3 1 1317 189 171 0 0 chr3 96059376 96059411 -63540372 + CT-rich Low_complexity Low_complexity 3 37 0 1 1317 717 184 37 0 chr3 96059411 96059547 -63540236 - B1_Mus1 SINE Alu -6 142 2 1 1317 587 203 30 8 chr3 96060545 96060679 -63539104 + B1_Mur2 SINE Alu 1 137 -12 1 1317 630 0 0 0 chr3 96060679 96060749 -63539034 + (GAAAA)n Simple_repeat Simple_repeat 2 71 0 1 1317 1186 68 0 0 chr3 96060875 96061021 -63538762 + B1_Mus2 SINE Alu 2 147 0 1 1317 233 245 0 0 chr3 96061120 96061173 -63538610 - MER5A DNA MER1_type -48 141 89 1 1317 234 0 0 0 chr3 96061696 96061722 -63538061 + (TG)n Simple_repeat Simple_repeat 2 27 0 1 1317 2941 131 50 4 chr3 96061980 96062455 -63537328 - RLTR19 LTR ERVK 0 499 3 1 1317 4160 120 91 14 chr3 96062838 96063540 -63536243 + RMER6A LTR ERVK 1 756 0 1 1317 734 60 10 0 chr3 96063854 96063954 -63535829 + (TA)n Simple_repeat Simple_repeat 2 102 0 1 1317 4713 94 85 0 chr3 96063993 96064255 -63535528 + RMER19A LTR ERVK 1 263 -474 1 1317 261 0 0 0 chr3 96064255 96064284 -63535499 + (CA)n Simple_repeat Simple_repeat 2 30 0 1 1317 4713 94 85 0 chr3 96064284 96064700 -63535083 + RMER19A LTR ERVK 264 736 -1 1 1317 311 286 209 14 chr3 96064712 96064932 -63534851 - L1MD3 LINE L1 -57 7938 7676 1 1317 271 252 121 43 chr3 96064955 96065096 -63534687 + L1MD1 LINE L1 6067 6218 -24 1 1317 776 123 64 14 chr3 96065612 96065752 -63534031 - B2_Mm2 SINE B2 -1 194 48 1 1317 311 261 94 29 chr3 96065811 96065949 -63533834 - ID_B1 SINE B4 -1 223 77 1 1317 180 0 0 0 chr3 96068199 96068219 -63531564 + (CCA)n Simple_repeat Simple_repeat 2 21 0 1 1317 227 159 215 31 chr3 96068767 96068832 -63530951 + MER34A LTR ERV1 1 77 -494 1 1317 220 259 19 0 chr3 96068893 96068947 -63530836 + G-rich Low_complexity Low_complexity 4 58 0 1 1317 376 289 134 54 chr3 96069055 96069278 -63530505 + MER34A1 LTR ERV1 327 567 -20 1 1317 23 0 0 0 chr3 96069304 96069327 -63530456 + AT_rich Low_complexity Low_complexity 1 23 0 1 1317 27 81 0 0 chr3 96069751 96069813 -63529970 + AT_rich Low_complexity Low_complexity 1 62 0 1 1317 414 162 0 13 chr3 96069944 96070019 -63529764 - PB1D9 SINE Alu -1 119 46 1 1317 719 320 131 42 chr3 96070506 96070987 -63528796 - MER44B DNA MER2_type 0 550 31 1 1317 297 173 99 174 chr3 96071555 96071582 -63528201 + MT2B LTR ERVL 139 219 -382 1 1317 552 168 193 9 chr3 96071582 96071696 -63528087 + B1_Mur4 SINE Alu 1 135 -15 1 1317 612 222 19 50 chr3 96071670 96071694 -63528089 + ID_B1 SINE B4 67 222 -2 1 1317 1058 66 0 0 chr3 96071694 96071831 -63527952 + B1_Mus1 SINE Alu 10 146 -2 1 1317 297 173 99 174 chr3 96071696 96071716 -63528067 + MT2B LTR ERVL 220 287 -314 1 1317 1711 25 0 0 chr3 96074238 96074440 -63525343 - MTA_Mm LTR MaLR -194 202 1 1 1317 9139 36 7 4 chr3 96074440 96075534 -63524249 - MTA_Mm-int LTR MaLR 0 1098 1 1 164 3507 28 2 0 chr3 96075534 96075929 -63523854 - MTA_Mm LTR MaLR 0 396 1 1 1318 9139 36 7 4 chr3 96075929 96077023 -63522760 - MTA_Mm-int LTR MaLR 0 1098 1 1 1318 3507 28 2 0 chr3 96077023 96077418 -63522365 - MTA_Mm LTR MaLR 0 396 1 1 1318 265 155 208 14 chr3 96078173 96078245 -63521538 - MurSatRep1 Unknown Unknown -1852 285 200 1 1318 450 229 17 84 chr3 96078280 96078399 -63521384 + B1_Mus2 SINE Alu 30 140 -7 1 1318 272 257 114 0 chr3 96078889 96078959 -63520824 + RSINE1 SINE B4 3 80 -85 1 1318 184 299 78 70 chr3 96079059 96079174 -63520609 - L2 LINE L2 -2841 578 463 1 1318 573 204 0 55 chr3 96079229 96079358 -63520425 + B1_Mur2 SINE Alu 2 113 -7 1 1318 1280 63 97 0 chr3 96079592 96079767 -63520016 - B2_Mm2 SINE B2 -2 193 2 1 1318 240 208 0 36 chr3 96079943 96079998 -63519785 + L1MC LINE L1 2683 2735 -3411 1 1318 1211 48 7 0 chr3 96080332 96080478 -63519305 + B1_Mus2 SINE Alu 1 147 0 1 1318 207 100 0 0 chr3 96080478 96080508 -63519275 + (CAAAA)n Simple_repeat Simple_repeat 1 30 0 1 1318 888 228 46 10 chr3 96080695 96080890 -63518893 - B3 SINE B2 -4 212 11 1 1318 230 388 0 0 chr3 96080819 96080899 -63518884 - RSINE1 SINE B4 -83 82 3 1 1318 243 0 0 0 chr3 96080903 96080930 -63518853 + (GTTTG)n Simple_repeat Simple_repeat 2 28 0 1 1318 536 242 31 0 chr3 96081014 96081142 -63518641 - ID_B1 SINE B4 -20 204 73 1 1318 225 0 0 0 chr3 96082924 96082949 -63516834 + (A)n Simple_repeat Simple_repeat 1 25 0 1 1318 31 0 0 0 chr3 96083262 96083293 -63516490 + AT_rich Low_complexity Low_complexity 1 31 0 1 1318 383 218 23 0 chr3 96083472 96083559 -63516224 - ID_B1 SINE B4 -24 200 112 1 1318 206 192 19 0 chr3 96083659 96083711 -63516072 + (TG)n Simple_repeat Simple_repeat 1 53 0 1 1318 302 129 16 0 chr3 96083774 96083836 -63515947 + (TG)n Simple_repeat Simple_repeat 1 63 0 1 1318 231 61 0 0 chr3 96084191 96084224 -63515559 + (TGGG)n Simple_repeat Simple_repeat 4 36 0 1 1318 355 239 223 7 chr3 96084229 96084359 -63515424 + B3 SINE B2 59 216 0 1 1318 432 284 36 9 chr3 96084377 96084487 -63515296 + B4A SINE B4 11 123 -169 1 1318 557 296 156 39 chr3 96084657 96084914 -63514869 + B4A SINE B4 5 291 -1 1 1318 1781 148 71 0 chr3 96085322 96085619 -63514164 + ORR1A2 LTR MaLR 1 318 -9 1 1318 337 321 29 64 chr3 96085597 96085662 -63514121 + RMER5 LTR ERV1 153 210 -324 1 1318 4212 91 26 0 chr3 96085662 96086231 -63513552 + MT2B2 LTR ERVL 1 584 0 1 1318 598 293 328 28 chr3 96086231 96086469 -63513314 + RMER5 LTR ERV1 211 524 -10 1 1318 331 134 68 95 chr3 96086537 96086611 -63513172 - B3 SINE B2 -107 109 38 1 1318 1184 157 9 64 chr3 96086615 96086833 -63512950 + ORR1D1 LTR MaLR 13 218 -156 1 1318 449 241 253 7 chr3 96086868 96087014 -63512769 - B3A SINE B2 -16 182 1 1 1318 283 298 65 24 chr3 96087184 96087308 -63512475 - MERVL-int LTR ERVL -617 4868 4740 1 1318 2543 125 51 2 chr3 96088843 96088938 -63510845 + MTC LTR MaLR 1 97 -324 1 1318 1336 88 0 81 chr3 96088938 96089149 -63510634 - B2_Mm2 SINE B2 -1 194 1 1 1318 2543 125 51 2 chr3 96089149 96089447 -63510336 + MTC LTR MaLR 98 412 -9 1 1318 219 328 0 31 chr3 96089481 96089610 -63510173 + A-rich Low_complexity Low_complexity 5 129 0 1 1318 540 276 125 36 chr3 96091800 96091992 -63507791 + MLT1E1A LTR MaLR 288 496 -184 1 1318 1383 78 5 25 chr3 96092831 96093027 -63506756 - B2_Mm1a SINE B2 0 193 2 1 1318 2417 160 16 44 chr3 96093203 96093635 -63506148 + RLTR9B2 LTR ERVK 1 420 0 1 1318 195 42 0 0 chr3 96093810 96093834 -63505949 + (CA)n Simple_repeat Simple_repeat 1 24 0 1 1318 639 251 6 63 chr3 96094671 96094722 -63505061 + B3 SINE B2 1 43 -173 1 1318 1256 170 8 70 chr3 96094722 96094877 -63504906 + URR1A DNA MER1_type 1 157 -69 1 1318 1442 49 48 11 chr3 96094877 96095063 -63504720 + B2_Mm1t SINE B2 1 193 0 1 1318 1256 170 8 70 chr3 96095063 96095148 -63504635 + URR1A DNA MER1_type 158 226 0 1 1318 639 251 6 63 chr3 96095148 96095270 -63504513 + B3 SINE B2 44 164 -52 1 1318 258 81 0 0 chr3 96095274 96095311 -63504472 + (CA)n Simple_repeat Simple_repeat 1 37 0 1 1318 248 0 0 30 chr3 96095335 96095368 -63504415 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 1 1318 987 134 0 0 chr3 96095371 96095505 -63504278 - B1_Mus1 SINE Alu -13 135 2 1 1318 1185 22 0 0 chr3 96095527 96095661 -63504122 - B1_Mus1 SINE Alu -13 135 2 1 1318 339 256 56 17 chr3 96095697 96095878 -63503905 + L1P5 LINE L1 5327 5514 -642 1 1318 216 0 0 0 chr3 96096450 96096474 -63503309 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 1 1318 1236 160 26 44 chr3 96096988 96097217 -63502566 + URR1B DNA MER1_type 1 225 0 1 1318 678 221 16 0 chr3 96098029 96098156 -63501627 - ID_B1 SINE B4 -14 210 82 1 1318 430 205 133 25 chr3 96098181 96098301 -63501482 - B1_Mur1 SINE Alu -16 133 1 1 1318 459 52 0 0 chr3 96098350 96098408 -63501375 + (TC)n Simple_repeat Simple_repeat 2 59 0 1 1318 1513 69 0 19 chr3 96099215 96099423 -63500360 + RMER4B LTR ERVK 1 204 -381 1 1318 260 264 161 0 chr3 96099424 96099511 -63500272 + L1_Rod LINE L1 3910 4010 -1837 1 1318 705 279 193 42 chr3 96099533 96099977 -63499806 + MT2A LTR ERVL 2 600 -1 1 1318 252 209 141 0 chr3 96099980 96100071 -63499712 + L1M2 LINE L1 4045 4165 -1981 1 1318 282 77 0 0 chr3 96100071 96100110 -63499673 + B2_Mm2 SINE B2 1 39 -156 1 1318 912 278 0 5 chr3 96100148 96100365 -63499418 + B3 SINE B2 1 216 0 1 1318 195 125 0 0 chr3 96100375 96100415 -63499368 + (T)n Simple_repeat Simple_repeat 1 40 0 1 1318 1250 48 0 0 chr3 96100415 96100562 -63499221 - B1_Mus2 SINE Alu 0 147 1 1 1318 969 234 279 6 chr3 96100591 96101079 -63498704 + L1M2 LINE L1 4478 5078 -1065 1 1318 191 36 36 0 chr3 96101230 96101258 -63498525 + (TTTC)n Simple_repeat Simple_repeat 3 31 0 1 1318 273 248 88 88 chr3 96101259 96101396 -63498387 - MT2B LTR ERVL -262 339 203 1 1318 637 126 0 97 chr3 96101303 96101417 -63498366 - B1_Mus2 SINE Alu -9 139 37 1 1318 1400 107 98 0 chr3 96101426 96101631 -63498152 + URR1B DNA MER1_type 1 225 0 1 1318 678 166 15 35 chr3 96101641 96101772 -63498011 + ID_B1 SINE B4 86 210 -14 1 1318 1036 95 0 45 chr3 96101916 96102071 -63497712 + B1_Mus1 SINE Alu 1 148 0 1 1318 201 147 0 0 chr3 96102073 96102107 -63497676 + (GAAAA)n Simple_repeat Simple_repeat 3 36 0 1 1318 483 267 33 33 chr3 96102974 96103094 -63496689 - PB1D10 SINE Alu 0 120 1 1 1318 444 235 202 0 chr3 96103522 96103641 -63496142 - ID_B1 SINE B4 0 224 82 1 1318 658 194 157 41 chr3 96103660 96103832 -63495951 - B3A SINE B2 -6 192 1 2 1318 189 0 0 0 chr3 96103879 96103900 -63495883 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 2 1318 766 45 216 0 chr3 96103900 96104011 -63495772 - B1_Mus2 SINE Alu -10 137 3 2 1318 1678 167 149 3 chr3 96105474 96105588 -63494195 + MTD LTR MaLR 5 124 -295 2 1318 453 50 0 0 chr3 96105588 96105648 -63494135 + (TGGA)n Simple_repeat Simple_repeat 3 62 0 2 1318 1678 167 149 3 chr3 96105648 96105882 -63493901 + MTD LTR MaLR 125 403 -16 2 1318 186 118 0 0 chr3 96106580 96106614 -63493169 + (CCCCCA)n Simple_repeat Simple_repeat 3 36 0 2 1318 301 221 0 0 chr3 96107464 96107532 -63492251 + ID_B1 SINE B4 96 163 -61 2 1318 273 162 41 68 chr3 96107472 96107545 -63492238 + PB1D7 SINE Alu 23 93 -27 2 1318 2082 122 58 0 chr3 96107567 96107878 -63491905 - ORR1A4 LTR MaLR 0 329 1 2 1318 1486 150 23 81 chr3 96108253 96108627 -63491156 + ORR1B2 LTR MaLR 3 305 -79 2 1318 414 266 11 0 chr3 96108634 96108728 -63491055 + PB1D10 SINE Alu 7 101 -16 2 1318 239 345 82 0 chr3 96108728 96108744 -63491039 + B4 SINE B4 92 210 -82 2 1318 988 138 38 0 chr3 96109321 96109481 -63490302 - URR1B DNA MER1_type -1 224 59 2 1318 771 219 57 26 chr3 96109897 96110089 -63489694 + B3A SINE B2 1 198 0 2 1318 354 264 113 0 chr3 96110197 96110303 -63489480 + B1F1 SINE Alu 30 147 -2 2 1318 678 155 22 65 chr3 96110844 96110982 -63488801 - B1_Mur4 SINE Alu 0 150 19 2 1318 479 271 7 85 chr3 96110983 96111124 -63488659 + LTR87 LTR ERVL? 14 143 -481 2 1318 2664 128 84 55 chr3 96111323 96111836 -63487947 + RLTR24 LTR ERV1 2 529 0 2 1318 312 230 184 68 chr3 96111881 96112044 -63487739 + L1MEg LINE L1 770 951 -5133 2 1318 354 224 104 2 chr3 96112154 96112248 -63487535 + B4 SINE B4 3 104 -61 2 1318 270 116 0 0 chr3 96112254 96112297 -63487486 + (CA)n Simple_repeat Simple_repeat 2 44 0 2 1318 24 32 0 0 chr3 96112321 96112352 -63487431 + AT_rich Low_complexity Low_complexity 1 31 0 2 1318 189 0 0 0 chr3 96112725 96112746 -63487037 + (GA)n Simple_repeat Simple_repeat 2 22 0 2 1318 2375 110 94 23 chr3 96112810 96112902 -63486881 - MTC LTR MaLR -1 420 313 2 1318 408 161 16 33 chr3 96112902 96113024 -63486759 + L1Md_A LINE L1 6463 6582 0 2 1318 2375 110 94 23 chr3 96113024 96113323 -63486460 - MTC LTR MaLR -109 312 1 2 1318 364 287 104 107 chr3 96113364 96113711 -63486072 - ORR1E LTR MaLR -5 354 9 2 1318 1405 70 27 0 chr3 96113828 96114014 -63485769 + B2_Mm2 SINE B2 1 191 -4 2 1318 2988 41 57 0 chr3 96114248 96114615 -63485168 + RLTR10 LTR ERVK 1 388 -2 2 1318 545 113 0 0 chr3 96115176 96115247 -63484536 + tRNA-Gly-GGG tRNA tRNA 1 71 -3 2 1318 422 283 10 20 chr3 96115759 96115860 -63483923 + RSINE1 SINE B4 8 107 -58 2 1318 3079 119 67 6 chr3 96116733 96117225 -63482558 + RLTR28 LTR ERVL 3 524 0 2 1318 3747 46 5 0 chr3 96117385 96117819 -63481964 - RLTR10C LTR ERVK 0 436 1 2 1318 7949 57 0 0 chr3 96117819 96118750 -63481033 - MMERVK10C-int LTR ERVK 0 7581 6651 2 1318 41693 51 0 1 chr3 96118741 96123686 -63476097 - MMERVK10C-int LTR ERVK -1771 5810 870 2 1318 2668 103 53 3 chr3 96123684 96124064 -63475719 - MMERVK10C-int LTR ERVK -7182 399 1 2 1318 3628 58 5 2 chr3 96124064 96124499 -63475284 - RLTR10C LTR ERVK 0 436 1 2 1318 736 148 50 64 chr3 96124761 96124963 -63474820 + Lx9 LINE L1 7445 7643 -1 2 1318 3002 166 60 23 chr3 96124988 96125600 -63474183 + Lx9 LINE L1 7010 7644 0 2 1318 885 68 0 0 chr3 96125606 96125723 -63474060 + (GGGAGA)n Simple_repeat Simple_repeat 3 119 0 2 1318 659 40 0 0 chr3 96125996 96126072 -63473711 + tRNA-Asn-AAC tRNA tRNA 1 76 -1 2 1318 188 260 40 0 chr3 96126230 96126280 -63473503 + MIRc SINE MIR 129 180 -88 2 1318 410 299 23 12 chr3 96126532 96126674 -63473109 + B3A SINE B2 3 149 -67 2 1318 1495 62 16 5 chr3 96126836 96127029 -63472754 + B2_Mm2 SINE B2 1 195 0 2 1318 27 0 0 0 chr3 96127172 96127199 -63472584 + AT_rich Low_complexity Low_complexity 1 27 0 2 1318 438 259 127 17 chr3 96127748 96127866 -63471917 - MLT2B4 LTR ERVL -343 213 83 2 1318 374 167 45 0 chr3 96127864 96127930 -63471853 + B1_Mm SINE Alu 78 146 -1 2 1318 1195 36 0 0 chr3 96127934 96128073 -63471710 + B1_Mm SINE Alu 1 139 -8 2 1318 234 0 71 24 chr3 96128073 96128115 -63471668 + (CAAA)n Simple_repeat Simple_repeat 2 45 0 2 1318 858 176 0 0 chr3 96128387 96128523 -63471260 - B1_Mus2 SINE Alu -1 146 11 2 1318 334 270 28 83 chr3 96128431 96128540 -63471243 - MT2B LTR ERVL -344 257 155 2 1318 310 216 67 13 chr3 96129612 96129687 -63470096 - B1_Mus2 SINE Alu -7 140 62 2 1318 215 326 0 0 chr3 96129841 96129890 -63469893 - ID2 SINE ID -1 82 34 2 1318 2393 121 60 3 chr3 96129893 96130258 -63469525 + ORR1B1 LTR MaLR 1 386 -8 2 1318 287 326 43 0 chr3 96130277 96130369 -63469414 - B1_Mus2 SINE Alu -51 96 1 2 1318 482 184 63 5 chr3 96130503 96130621 -63469162 - B1_Mus2 SINE Alu -21 128 1 2 1318 264 303 0 82 chr3 96130542 96130639 -63469144 - MT2B LTR ERVL -361 240 152 2 1318 535 211 152 34 chr3 96130695 96130872 -63468911 - B3A SINE B2 0 198 1 2 1318 504 0 0 0 chr3 96131040 96131096 -63468687 + (TAAAA)n Simple_repeat Simple_repeat 5 60 0 2 1318 720 174 14 14 chr3 96131298 96131444 -63468339 + B1_Mur3 SINE Alu 4 149 0 2 1318 505 221 0 19 chr3 96131460 96131566 -63468217 + B1_Mur2 SINE Alu 1 104 -45 2 1318 267 31 0 0 chr3 96131604 96131636 -63468147 + (AGGGGG)n Simple_repeat Simple_repeat 2 33 0 2 1318 269 352 79 45 chr3 96131654 96132032 -63467751 - RMER5 LTR ERV1 -65 469 79 2 1318 1327 48 0 12 chr3 96132347 96132514 -63467269 + U1 snRNA snRNA 1 165 0 2 1318 336 162 450 0 chr3 96132682 96132793 -63466990 - B2_Mm2 SINE B2 -31 164 4 2 1318 514 136 58 0 chr3 96132973 96133071 -63466712 - B1_Mur4 SINE Alu 0 150 47 2 1318 213 308 87 55 chr3 96133441 96133568 -63466215 - MIRb SINE MIR -119 149 19 2 1318 1228 41 0 0 chr3 96133846 96133991 -63465792 + B1_Mm SINE Alu 3 147 0 2 1318 2345 89 114 6 chr3 96135072 96135424 -63464359 - RLTR10 LTR ERVK 0 390 1 2 1318 198 118 0 0 chr3 96135551 96135585 -63464198 + (CAA)n Simple_repeat Simple_repeat 3 36 0 2 1318 1161 53 110 29 chr3 96135613 96135786 -63463997 + B2_Mm2 SINE B2 1 187 -8 2 1318 213 231 0 0 chr3 96136263 96136302 -63463481 + A-rich Low_complexity Low_complexity 5 43 0 2 1318 684 0 0 0 chr3 96136662 96136735 -63463048 + tRNA-Val-GTG tRNA tRNA 1 73 -3 2 1318 258 304 123 71 chr3 96136768 96136938 -63462845 + MLT1A0 LTR MaLR 10 188 -177 2 1318 216 208 204 19 chr3 96137589 96137643 -63462140 + B1_Mus1 SINE Alu 19 82 -66 2 1318 189 0 0 0 chr3 96138344 96138365 -63461418 + (A)n Simple_repeat Simple_repeat 1 21 0 2 1318 608 40 0 0 chr3 96138537 96138611 -63461172 - tRNA-Asn-AAC tRNA tRNA -3 74 1 2 1318 549 95 0 0 chr3 96138893 96138967 -63460816 + tRNA-Asn-AAC tRNA tRNA 1 74 -3 2 1318 23 0 0 0 chr3 96139008 96139031 -63460752 + AT_rich Low_complexity Low_complexity 1 23 0 2 1318 329 219 66 9 chr3 96139311 96139417 -63460366 - L1MEc LINE L1 -4210 2190 2079 2 1318 205 152 0 0 chr3 96139702 96139735 -63460048 + C-rich Low_complexity Low_complexity 2 34 0 2 1318 545 293 107 64 chr3 96139818 96140014 -63459769 - L1MEc LINE L1 -5005 1395 1190 2 1318 598 210 47 74 chr3 96140014 96140163 -63459620 - B1_Mus2 SINE Alu 0 147 3 2 1318 545 293 107 64 chr3 96140163 96140294 -63459489 - L1MEc LINE L1 -5211 1189 1054 2 1318 279 221 227 8 chr3 96140345 96140477 -63459306 - L1MEc LINE L1 -5410 990 830 2 1318 2162 104 70 18 chr3 96140477 96140818 -63458965 - ORR1B1 LTR MaLR 0 394 36 2 1318 234 264 176 46 chr3 96140839 96140970 -63458813 - L1MEc LINE L1 -5927 473 326 2 1318 359 157 0 78 chr3 96141020 96141110 -63458673 + RMER1C Other Other 1225 1307 -35 2 1318 1509 179 86 0 chr3 96141325 96141616 -63458167 + RMER1B Other Other 594 909 -157 2 1318 2908 197 36 61 chr3 96141927 96142571 -63457212 + RMER1C Other Other 712 1339 -3 2 1318 28 0 0 0 chr3 96142682 96142710 -63457073 + AT_rich Low_complexity Low_complexity 1 28 0 2 1318 207 0 0 0 chr3 96144055 96144078 -63455705 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2 1318 444 220 80 0 chr3 96144279 96144379 -63455404 + B2_Mm1t SINE B2 1 108 -85 2 1318 273 57 0 0 chr3 96144407 96144442 -63455341 + (GAAA)n Simple_repeat Simple_repeat 2 36 0 2 1318 627 41 0 0 chr3 96145077 96145150 -63454633 - tRNA-Gln-CAG tRNA tRNA -2 73 1 2 1318 186 103 0 0 chr3 96145563 96145592 -63454191 + (TG)n Simple_repeat Simple_repeat 2 30 0 2 1318 498 196 0 0 chr3 96145620 96145722 -63454061 + (TA)n Simple_repeat Simple_repeat 2 103 0 2 1318 1651 42 0 0 chr3 96146245 96146438 -63453345 + B2_Mm1a SINE B2 1 193 0 2 1318 264 59 0 0 chr3 96146760 96146794 -63452989 + (TG)n Simple_repeat Simple_repeat 1 34 0 2 1318 301 345 117 86 chr3 96146795 96146858 -63452925 - B3A SINE B2 -31 167 116 2 1318 207 0 0 0 chr3 96146866 96146889 -63452894 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 2 1318 1151 55 7 7 chr3 96146889 96147026 -63452757 - B1_Mus2 SINE Alu -9 138 1 2 1318 301 345 117 86 chr3 96147026 96147124 -63452659 - B3A SINE B2 -83 115 1 2 1318 441 0 0 0 chr3 96147173 96147222 -63452561 + (CA)n Simple_repeat Simple_repeat 2 50 0 2 1318 549 0 0 0 chr3 96147293 96147354 -63452429 + (CA)n Simple_repeat Simple_repeat 2 62 0 2 1318 361 171 0 41 chr3 96147363 96147436 -63452347 + RLTR20B1 LTR ERVK 492 561 -2 2 1318 1917 155 142 29 chr3 96148490 96148876 -63450907 + RLTR24 LTR ERV1 1 430 -99 2 1318 182 111 0 62 chr3 96148894 96148942 -63450841 + (CCA)n Simple_repeat Simple_repeat 2 46 0 2 1318 377 287 122 59 chr3 96149019 96149256 -63450527 - MER67B LTR ERV1 0 661 410 2 1318 817 147 7 27 chr3 96149524 96149671 -63450112 + URR1B DNA MER1_type 79 222 -3 2 1318 191 133 22 0 chr3 96149963 96150008 -63449775 + T-rich Low_complexity Low_complexity 2 47 0 3 1318 312 218 0 0 chr3 96150497 96150552 -63449231 + tRNA-Glu-GAA tRNA tRNA 1 55 -20 3 1318 634 0 0 0 chr3 96150597 96150669 -63449114 + tRNA-Glu-GAA tRNA tRNA 1 72 -3 3 1318 306 0 0 0 chr3 96151129 96151163 -63448620 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 3 1318 436 237 8 41 chr3 96151170 96151293 -63448490 - B3 SINE B2 -12 204 86 3 1318 397 234 33 90 chr3 96151389 96151511 -63448272 + PB1D9 SINE Alu 6 120 0 3 1318 201 133 43 43 chr3 96151512 96151559 -63448224 + (TAAA)n Simple_repeat Simple_repeat 1 47 0 3 1318 1049 284 81 52 chr3 96151575 96151921 -63447862 + MTEb LTR MaLR 1 356 -23 3 1318 295 78 59 0 chr3 96151908 96151959 -63447824 - B2_Mm2 SINE B2 -5 190 137 3 1318 370 92 37 5 chr3 96151948 96152011 -63447772 - B2_Mm2 SINE B2 -107 109 47 3 1318 1199 82 6 0 chr3 96152043 96152202 -63447581 - B2_Mm2 SINE B2 -26 169 10 3 1318 209 351 0 0 chr3 96152288 96152345 -63447438 - MIRm SINE MIR -135 141 85 3 1318 308 204 109 81 chr3 96152711 96152797 -63446986 - B3A SINE B2 -62 131 44 3 1318 3226 133 60 15 chr3 96152842 96153389 -63446394 - Lx4B LINE L1 -89 6969 6398 3 1318 493 312 18 42 chr3 96153924 96154091 -63445692 + U1 snRNA snRNA 1 163 -2 3 1318 198 103 0 0 chr3 96154483 96154512 -63445271 + (T)n Simple_repeat Simple_repeat 1 29 0 3 1318 460 166 38 142 chr3 96154512 96154658 -63445125 - B1F2 SINE Alu 0 315 34 3 1318 573 70 0 0 chr3 96155089 96155160 -63444623 - tRNA-Gly-GGG tRNA tRNA -3 71 1 3 1318 198 103 0 0 chr3 96155897 96155926 -63443857 + (CCCCCT)n Simple_repeat Simple_repeat 2 30 0 3 1318 739 170 0 13 chr3 96156264 96156419 -63443364 + GA-rich Low_complexity Low_complexity 3 155 0 3 1318 1048 103 0 14 chr3 96156462 96156610 -63443173 + B1_Mus1 SINE Alu 2 147 -1 3 1318 189 0 0 0 chr3 96156964 96156985 -63442798 + (TC)n Simple_repeat Simple_repeat 2 22 0 3 1318 776 209 0 0 chr3 96156995 96157124 -63442659 - B1_Mur2 SINE Alu -14 135 7 3 1318 380 191 0 0 chr3 96157256 96157324 -63442459 - tRNA-Gly-GGG tRNA tRNA -3 71 4 3 1318 385 174 112 34 chr3 96157654 96157743 -63442040 - RMER15 LTR ERVL -61 514 419 3 1318 225 0 0 0 chr3 96157810 96157835 -63441948 + (CACCC)n Simple_repeat Simple_repeat 3 27 0 3 1318 936 142 100 6 chr3 96157884 96158054 -63441729 + B2_Mm2 SINE B2 1 186 -9 3 1318 1093 62 7 40 chr3 96158127 96158278 -63441505 - B1_Mm SINE Alu 0 147 2 3 1318 2226 93 29 0 chr3 96158556 96158866 -63440917 + ORR1A2 LTR MaLR 1 319 -8 3 1318 186 43 0 0 chr3 96159611 96159634 -63440149 + (TTG)n Simple_repeat Simple_repeat 2 24 0 3 1318 970 126 28 0 chr3 96159636 96159779 -63440004 - B1_Mus1 SINE Alu -1 147 1 3 1318 305 264 104 27 chr3 96159853 96159999 -63439784 - B1_Mur4 SINE Alu -3 147 1 3 1318 323 264 127 91 chr3 96160031 96160252 -63439531 + CYRA11_Mm Unknown Y-chromosome 148 376 -241 3 1318 894 146 109 33 chr3 96160070 96160254 -63439529 - URR1B DNA MER1_type -19 206 9 3 1318 256 24 49 0 chr3 96161155 96161196 -63438587 + (TTG)n Simple_repeat Simple_repeat 2 44 0 3 1318 529 266 14 41 chr3 96162270 96162415 -63437368 + B1_Mur1 SINE Alu 9 149 0 3 1318 204 67 0 0 chr3 96162418 96162448 -63437335 + (A)n Simple_repeat Simple_repeat 1 30 0 3 1318 910 82 0 0 chr3 96162885 96163007 -63436776 + B1_Mus1 SINE Alu 3 124 -24 3 1318 189 0 0 0 chr3 96163429 96163450 -63436333 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 3 1318 1366 49 0 6 chr3 96163875 96164040 -63435743 - U1 snRNA snRNA -1 164 1 3 1318 385 204 363 0 chr3 96164502 96164659 -63435124 + B3 SINE B2 2 215 -1 3 1318 408 134 245 49 chr3 96164705 96164807 -63434976 + B2_Mm2 SINE B2 1 122 -73 3 1318 426 39 0 0 chr3 96164822 96164874 -63434909 + (GGA)n Simple_repeat Simple_repeat 2 53 0 3 1318 2195 112 19 3 chr3 96165283 96165605 -63434178 - ORR1A2 LTR MaLR 0 327 1 3 1318 267 200 128 98 chr3 96165841 96165974 -63433809 + RodERV21-int LTR ERV1 315 451 -4540 3 1318 2641 201 53 30 chr3 96166189 96166605 -63433178 + RodERV21-int LTR ERV1 3504 3938 -1053 3 1318 1627 136 14 81 chr3 96166605 96166950 -63432833 + RLTRETN_Mm LTR ERVK 1 322 0 3 1318 2641 201 53 30 chr3 96166950 96167102 -63432681 + RodERV21-int LTR ERV1 3939 4085 -906 3 1318 246 138 0 33 chr3 96167240 96167300 -63432483 - B2_Mm2 SINE B2 -7 188 131 3 1318 3483 68 49 0 chr3 96167301 96167770 -63432013 - LTRIS2 LTR ERV1 0 564 73 3 1318 1657 68 9 5 chr3 96167770 96167991 -63431792 - RLTR1C LTR ERV1 0 503 282 3 1318 1779 174 182 86 chr3 96167990 96168524 -63431259 - RLTR6_Mm LTR ERV1 -69 585 1 3 1318 63585 31 13 0 chr3 96168524 96176221 -63423562 - RLTR6-int LTR ERV1 0 7778 1 3 1318 2142 163 108 70 chr3 96176221 96177106 -63422677 - RLTR1D LTR ERV1 -65 589 1 3 1318 507 70 70 0 chr3 96177115 96177186 -63422597 - LTRIS2 LTR ERV1 -488 76 1 3 1318 393 99 286 36 chr3 96177194 96177278 -63422505 - B2_Mm2 SINE B2 -90 105 1 3 1318 400 204 363 0 chr3 96177324 96177481 -63422302 - B3 SINE B2 -1 215 2 3 1318 1379 49 0 6 chr3 96177943 96178108 -63421675 + U1 snRNA snRNA 1 164 -1 3 1318 189 0 0 0 chr3 96178531 96178552 -63421231 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 3 1318 921 82 0 0 chr3 96178974 96179096 -63420687 - B1_Mus1 SINE Alu -24 124 3 3 1318 535 266 14 41 chr3 96179557 96179702 -63420081 - B1_Mur1 SINE Alu 0 149 9 3 1318 256 24 49 0 chr3 96180776 96180817 -63418966 + (CAA)n Simple_repeat Simple_repeat 2 44 0 3 1318 885 146 109 33 chr3 96181718 96181902 -63417881 + URR1B DNA MER1_type 9 206 -19 3 1318 319 264 127 91 chr3 96181720 96181941 -63417842 - CYRA11_Mm Unknown Y-chromosome -241 376 148 3 1318 310 287 75 68 chr3 96181973 96182119 -63417664 + B1_Mur4 SINE Alu 1 147 -3 3 1318 986 126 28 0 chr3 96182193 96182336 -63417447 + B1_Mus1 SINE Alu 1 147 -1 3 1318 186 43 0 0 chr3 96182338 96182361 -63417422 + (CAA)n Simple_repeat Simple_repeat 2 24 0 3 1318 2230 93 29 0 chr3 96183127 96183437 -63416346 - ORR1A2 LTR MaLR -8 319 1 3 1318 1107 62 7 40 chr3 96183715 96183866 -63415917 + B1_Mm SINE Alu 2 147 0 3 1318 947 142 100 6 chr3 96183939 96184109 -63415674 - B2_Mm2 SINE B2 -9 186 1 3 1318 225 0 0 0 chr3 96184158 96184183 -63415600 + (GGGTG)n Simple_repeat Simple_repeat 3 27 0 3 1318 387 174 112 34 chr3 96184250 96184339 -63415444 + RMER15 LTR ERVL 419 514 -61 3 1318 389 191 0 0 chr3 96184669 96184737 -63415046 + tRNA-Gly-GGG tRNA tRNA 4 71 -3 3 1318 779 209 0 0 chr3 96184869 96184998 -63414785 + B1_Mur2 SINE Alu 7 135 -14 3 1318 189 0 0 0 chr3 96185008 96185029 -63414754 + (GA)n Simple_repeat Simple_repeat 2 22 0 3 1318 1063 103 0 14 chr3 96185383 96185531 -63414252 - B1_Mus1 SINE Alu -1 147 2 3 1318 739 170 0 13 chr3 96185574 96185729 -63414054 + CT-rich Low_complexity Low_complexity 3 155 0 3 1318 198 103 0 0 chr3 96186067 96186096 -63413687 + (AGGGGG)n Simple_repeat Simple_repeat 2 30 0 3 1318 582 70 0 0 chr3 96186833 96186904 -63412879 + tRNA-Gly-GGG tRNA tRNA 1 71 -3 3 1318 456 166 38 142 chr3 96187335 96187481 -63412302 + B1F2 SINE Alu 34 315 0 3 1318 216 97 0 0 chr3 96187481 96187512 -63412271 + (A)n Simple_repeat Simple_repeat 1 31 0 3 1318 493 312 18 42 chr3 96187904 96188071 -63411712 - U1 snRNA snRNA -2 163 1 3 1318 3015 133 60 15 chr3 96188606 96189153 -63410630 + Lx4B LINE L1 6398 6969 -89 3 1318 311 204 109 81 chr3 96189198 96189284 -63410499 + B3A SINE B2 44 131 -62 3 1318 198 351 0 0 chr3 96189650 96189707 -63410076 + MIRm SINE MIR 85 141 -135 3 1318 1200 82 6 0 chr3 96189794 96189953 -63409830 + B2_Mm2 SINE B2 10 169 -26 3 1318 372 85 48 2 chr3 96189985 96190088 -63409695 + B2_Mm2 SINE B2 47 190 -5 3 1318 1045 284 81 52 chr3 96190075 96190421 -63409362 - MTEb LTR MaLR -23 356 1 3 1318 201 133 43 43 chr3 96190437 96190484 -63409299 + (TTTA)n Simple_repeat Simple_repeat 1 47 0 3 1318 397 234 33 90 chr3 96190485 96190607 -63409176 - PB1D9 SINE Alu 0 120 6 3 1318 415 246 8 41 chr3 96190703 96190826 -63408957 + B3 SINE B2 86 204 -12 3 1318 306 0 0 0 chr3 96190833 96190867 -63408916 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 3 1318 642 0 0 0 chr3 96191327 96191399 -63408384 - tRNA-Glu-GAA tRNA tRNA -3 72 1 3 1318 315 218 0 0 chr3 96191444 96191499 -63408284 - tRNA-Glu-GAA tRNA tRNA -20 55 1 3 1318 191 133 22 0 chr3 96191988 96192033 -63407750 + A-rich Low_complexity Low_complexity 2 47 0 3 1318 800 154 7 27 chr3 96192325 96192472 -63407311 - URR1B DNA MER1_type -3 222 79 3 1318 357 276 159 51 chr3 96192782 96192977 -63406806 + MER67B LTR ERV1 446 661 0 3 1318 360 0 0 0 chr3 96193042 96193082 -63406701 + (TG)n Simple_repeat Simple_repeat 2 41 0 3 1318 260 80 0 57 chr3 96193082 96193135 -63406648 + (TGG)n Simple_repeat Simple_repeat 1 50 0 3 1318 1690 167 173 29 chr3 96193158 96193534 -63406249 - RLTR24 LTR ERV1 -99 430 1 3 1318 378 162 0 14 chr3 96194587 96194656 -63405127 - RLTR20B1 LTR ERVK 0 563 496 3 1318 477 0 0 0 chr3 96194671 96194724 -63405059 + (TG)n Simple_repeat Simple_repeat 2 54 0 3 1318 361 310 0 124 chr3 96194773 96194902 -63404881 + B3 SINE B2 1 113 -103 3 1318 1184 37 0 0 chr3 96194902 96195037 -63404746 + B1_Mus2 SINE Alu 1 135 -12 3 1318 180 0 0 0 chr3 96195040 96195060 -63404723 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 4 1318 378 61 0 0 chr3 96195132 96195181 -63404602 + (CA)n Simple_repeat Simple_repeat 1 49 0 4 1318 432 181 0 0 chr3 96196033 96196116 -63403667 + (TA)n Simple_repeat Simple_repeat 1 83 0 4 1318 568 84 0 0 chr3 96196209 96196280 -63403503 + tRNA-Gln-CAA tRNA tRNA 3 73 -2 4 1318 222 118 0 0 chr3 96196892 96196926 -63402857 + (T)n Simple_repeat Simple_repeat 1 34 0 4 1318 426 240 80 0 chr3 96196952 96197052 -63402731 - B2_Mm1t SINE B2 -85 108 1 4 1318 201 82 40 20 chr3 96197239 96197289 -63402494 + (CAAAA)n Simple_repeat Simple_repeat 1 51 0 4 1318 231 294 49 98 chr3 96197401 96197503 -63402280 + MTEa LTR MaLR 1 97 -282 4 1318 412 200 91 4 chr3 96198011 96198110 -63401673 - ORR1A3-int LTR MaLR -737 633 499 4 1318 1999 168 50 91 chr3 96198041 96198589 -63401194 - RLTR25A LTR ERVK -462 566 1 4 1318 1433 111 0 24 chr3 96198699 96198911 -63400872 + RLTR19B LTR ERVK 1 207 -508 4 1318 216 0 0 0 chr3 96198917 96198941 -63400842 + (A)n Simple_repeat Simple_repeat 1 24 0 4 1318 1197 62 7 0 chr3 96198942 96199087 -63400696 + B1_Mus2 SINE Alu 2 147 0 4 1318 2039 117 32 98 chr3 96199099 96199468 -63400315 + RLTR19B LTR ERVK 364 708 -7 4 1318 761 248 226 52 chr3 96200222 96200550 -63399233 - RMER15 LTR ERVL -48 527 143 4 1318 342 0 0 0 chr3 96200776 96200814 -63398969 + (TG)n Simple_repeat Simple_repeat 1 38 0 4 1318 574 107 94 43 chr3 96200838 96200955 -63398828 - RMER15 LTR ERVL -431 144 22 4 1318 3204 86 59 2 chr3 96201337 96201814 -63397969 + RMER2 LTR ERV1 1 504 -63 4 1318 703 69 369 0 chr3 96201816 96201946 -63397837 + B2_Mm1t SINE B2 2 179 -14 4 1318 435 108 316 26 chr3 96201978 96202092 -63397691 + B2_Mm2 SINE B2 47 193 -2 4 1318 523 114 22 22 chr3 96202076 96202166 -63397617 + RMER2 LTR ERV1 478 567 0 4 1318 622 42 0 0 chr3 96202981 96203053 -63396730 - tRNA-Gln-CAG tRNA tRNA -3 72 1 4 1318 2474 165 88 36 chr3 96203528 96204031 -63395752 - RLTR24 LTR ERV1 0 529 1 4 1318 355 244 76 33 chr3 96204149 96204278 -63395505 + PB1D9 SINE Alu 21 144 -5 4 1318 5746 177 124 20 chr3 96204307 96205579 -63394204 + RMER12B LTR ERVK 1 1404 0 4 1318 681 0 0 0 chr3 96206140 96206214 -63393569 + tRNA-Asn-AAC tRNA tRNA 1 74 -3 4 164 520 248 8 17 chr3 96206758 96206877 -63392906 - PB1D9 SINE Alu -1 119 2 4 1319 405 95 0 0 chr3 96206903 96206966 -63392817 + (TG)n Simple_repeat Simple_repeat 2 64 0 4 1319 535 183 50 34 chr3 96206993 96207112 -63392671 - B1_Mur2 SINE Alu -28 121 1 4 1319 600 291 60 0 chr3 96207126 96207277 -63392506 - B3A SINE B2 -35 163 4 4 1319 260 137 0 19 chr3 96207296 96207348 -63392435 + CT-rich Low_complexity Low_complexity 5 55 0 4 1319 632 170 38 0 chr3 96207348 96207454 -63392329 - B1_Mur4 SINE Alu -40 110 1 4 1319 998 184 143 54 chr3 96207908 96208167 -63391616 + RLTR24 LTR ERV1 248 529 0 4 1319 313 167 226 0 chr3 96209013 96209097 -63390686 + B1_Mur2 SINE Alu 40 142 -7 4 1319 1266 34 0 0 chr3 96209225 96209372 -63390411 + B1_Mus2 SINE Alu 1 147 0 4 1319 195 42 0 0 chr3 96209372 96209396 -63390387 + (A)n Simple_repeat Simple_repeat 1 24 0 4 1319 1114 102 0 35 chr3 96209407 96209580 -63390203 + B2_Mm2 SINE B2 23 189 -6 4 1319 465 82 14 14 chr3 96210173 96210247 -63389536 + tRNA-Glu-GAA tRNA tRNA 1 74 -1 4 1319 603 0 0 0 chr3 96210508 96210575 -63389208 + (TTTC)n Simple_repeat Simple_repeat 2 68 0 4 1319 1162 59 0 0 chr3 96210575 96210711 -63389072 - B1_Mm SINE Alu -9 138 3 4 1319 1600 186 29 22 chr3 96211000 96211313 -63388470 - MTC LTR MaLR -60 361 47 4 1319 3826 37 5 0 chr3 96211811 96212245 -63387538 + RLTR10C LTR ERVK 1 436 0 4 1319 366 181 42 0 chr3 96213370 96213442 -63386341 - MTC LTR MaLR -321 100 26 4 1319 497 300 8 8 chr3 96213501 96213632 -63386151 - ID_B1 SINE B4 -14 210 80 4 1319 643 28 0 0 chr3 96213991 96214063 -63385720 + tRNA-His-CAY_ tRNA tRNA 1 72 -3 4 1319 458 152 0 0 chr3 96214159 96214241 -63385542 + PB1D9 SINE Alu 21 102 -18 4 1319 254 212 0 149 chr3 96214241 96214253 -63385530 + MT2B2 LTR ERVL 185 264 -320 4 1319 1015 101 54 54 chr3 96214284 96214451 -63385332 + B2_Mm2 SINE B2 21 187 -8 4 1319 357 296 39 23 chr3 96214787 96214915 -63384868 - B1F SINE Alu -1 148 19 4 1319 546 114 386 0 chr3 96215188 96215302 -63384481 - B2_Mm2 SINE B2 -37 158 1 4 1319 2352 245 36 2 chr3 96215303 96215858 -63383925 + Lx6 LINE L1 6191 6764 -696 4 1319 671 92 67 0 chr3 96215870 96215989 -63383794 - B2_Mm2 SINE B2 -2 193 67 4 1319 1316 190 99 139 chr3 96215989 96216673 -63383110 + MYSERV16_I-int LTR ERVK 1670 2326 0 4 1319 769 130 45 80 chr3 96216673 96216849 -63382934 + RLTR31_Mur LTR ERVK 1 170 -383 4 1319 223 310 57 11 chr3 96217622 96217710 -63382073 - PB1D9 SINE Alu -24 96 5 4 1319 297 224 188 0 chr3 96217725 96217810 -63381973 - B1_Mur4 SINE Alu 0 150 50 4 1319 267 262 175 0 chr3 96218035 96218115 -63381668 + ID_B1 SINE B4 19 112 -112 4 1319 24 67 0 0 chr3 96218441 96218486 -63381297 + GC_rich Low_complexity Low_complexity 1 45 0 4 1319 185 0 40 0 chr3 96218892 96218917 -63380866 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 4 1319 267 103 0 0 chr3 96218940 96218979 -63380804 + (CA)n Simple_repeat Simple_repeat 2 40 0 4 1319 22 0 0 0 chr3 96219050 96219072 -63380711 + AT_rich Low_complexity Low_complexity 1 22 0 4 1319 388 198 103 11 chr3 96219122 96219209 -63380574 + B1_Mur4 SINE Alu 13 107 -43 4 1319 313 222 16 0 chr3 96219232 96219295 -63380488 + PB1D10 SINE Alu 13 76 -41 4 1319 219 36 0 0 chr3 96219322 96219350 -63380433 + (T)n Simple_repeat Simple_repeat 1 28 0 4 1319 22 35 0 0 chr3 96219765 96219794 -63379989 + GC_rich Low_complexity Low_complexity 1 29 0 4 1319 3237 128 177 9 chr3 96220444 96220880 -63378903 - RLTR33 LTR ERVK 0 678 219 4 1319 1091 43 65 7 chr3 96220880 96221019 -63378764 + B1_Mus2 SINE Alu 1 147 0 4 1319 3237 128 177 9 chr3 96221019 96221157 -63378626 - RLTR33 LTR ERVK -460 218 9 4 1319 825 60 16 57 chr3 96221294 96221417 -63378366 - B1_Mus1 SINE Alu -13 135 18 4 1319 397 279 46 147 chr3 96221417 96221512 -63378271 - B4 SINE B4 -79 213 18 4 1319 431 271 39 78 chr3 96221674 96221802 -63377981 - B1F SINE Alu -26 123 1 4 1319 2508 94 190 0 chr3 96221889 96222325 -63377458 - RLTR47_MM LTR ERV1 -13 519 1 4 1319 4053 47 53 0 chr3 96222410 96222903 -63376880 - MURVY-LTR LTR ERV1 0 519 1 4 1319 2510 123 28 7 chr3 96222917 96223343 -63376440 + BGLII_B LTR ERVK 7 441 0 4 1319 300 250 213 0 chr3 96223452 96223560 -63376223 + B1F2 SINE Alu 18 148 -1 4 1319 689 208 104 0 chr3 96224054 96224208 -63375575 - B3 SINE B2 0 216 47 4 1319 461 156 22 0 chr3 96225248 96225338 -63374445 + CT-rich Low_complexity Low_complexity 2 93 0 4 1319 1018 39 0 0 chr3 96225338 96225465 -63374318 - B1_Mus2 SINE Alu 0 147 21 4 1319 772 181 14 27 chr3 96225990 96226138 -63373645 + B1_Mur4 SINE Alu 4 149 -1 4 1319 300 297 29 38 chr3 96226144 96226249 -63373534 + L1MEc LINE L1 1927 2030 -4370 4 1319 1284 67 0 6 chr3 96226655 96226820 -63372963 + U1 snRNA snRNA 1 164 -1 4 1319 1066 96 105 29 chr3 96227049 96227220 -63372563 + B2_Mm2 SINE B2 1 184 -11 4 1319 582 56 0 0 chr3 96227955 96228026 -63371757 - tRNA-Gly-GGG tRNA tRNA -3 71 1 4 1319 182 62 0 30 chr3 96228748 96228781 -63371002 + (CACCC)n Simple_repeat Simple_repeat 5 36 0 4 1319 213 121 0 0 chr3 96229134 96229167 -63370616 + (AGGGGG)n Simple_repeat Simple_repeat 1 33 0 4 1319 297 16 0 88 chr3 96229247 96229315 -63370468 + (TTTG)n Simple_repeat Simple_repeat 2 63 0 4 1319 471 18 0 0 chr3 96229534 96229590 -63370193 + (CA)n Simple_repeat Simple_repeat 2 57 0 4 1319 347 312 42 81 chr3 96229609 96229650 -63370133 - B4 SINE B4 -46 246 155 4 1319 638 198 74 8 chr3 96229650 96229772 -63370011 - B1_Mus2 SINE Alu -12 135 6 4 1319 347 312 42 81 chr3 96229772 96229814 -63369969 - B4 SINE B4 -46 154 55 4 1319 239 260 0 88 chr3 96229792 96229872 -63369911 - PB1D9 SINE Alu -34 86 14 4 1319 270 0 0 0 chr3 96230031 96230061 -63369722 + (CA)n Simple_repeat Simple_repeat 2 31 0 4 1319 260 211 19 37 chr3 96230257 96230311 -63369472 - B3A SINE B2 -86 112 60 4 1319 994 117 0 0 chr3 96230376 96230513 -63369270 - B1_Mur4 SINE Alu -13 137 1 4 1319 26 74 0 0 chr3 96230632 96230686 -63369097 + AT_rich Low_complexity Low_complexity 1 54 0 4 1319 223 161 36 0 chr3 96230702 96230758 -63369025 + (TA)n Simple_repeat Simple_repeat 1 58 0 4 1319 309 290 41 14 chr3 96230792 96230939 -63368844 - L1_Rod LINE L1 -3 5844 5694 4 1319 302 169 342 37 chr3 96231677 96231811 -63367972 - B2_Mm2 SINE B2 -19 176 2 4 1319 848 109 173 20 chr3 96231811 96231961 -63367822 - B2_Mm1t SINE B2 -14 179 7 4 1319 186 133 0 0 chr3 96231968 96231998 -63367785 + (T)n Simple_repeat Simple_repeat 1 30 0 4 1319 551 207 198 0 chr3 96232002 96232123 -63367660 - B1_Mur4 SINE Alu -5 145 1 4 1319 674 0 0 0 chr3 96232157 96232231 -63367552 + tRNA-Lys-AAG tRNA tRNA 1 74 -2 4 1319 316 143 0 6 chr3 96232239 96232292 -63367491 + B1_Mm SINE Alu 58 108 -42 4 1319 317 225 202 53 chr3 96232738 96232832 -63366951 - B3 SINE B2 -2 214 107 4 1319 420 319 96 99 chr3 96233282 96233939 -63365844 - L1MB5 LINE L1 -16 6168 5514 4 1319 530 149 0 10 chr3 96233964 96234066 -63365717 + CT-rich Low_complexity Low_complexity 3 103 0 4 1319 342 272 39 10 chr3 96234073 96234177 -63365606 - ID_B1 SINE B4 0 224 118 5 1319 351 300 142 35 chr3 96234308 96234505 -63365278 - L1MB5 LINE L1 -683 5491 5274 4 1319 585 247 12 65 chr3 96234810 96234979 -63364804 + B3A SINE B2 3 162 -36 5 1319 533 237 358 51 chr3 96235005 96235241 -63364542 + MT2A LTR ERVL 3 342 -259 5 1319 198 71 0 0 chr3 96235241 96235269 -63364514 + (TCTG)n Simple_repeat Simple_repeat 1 28 0 5 1319 485 199 139 75 chr3 96235269 96235400 -63364383 + MT2A LTR ERVL 287 431 -44 5 1319 289 238 16 0 chr3 96236277 96236340 -63363443 + ORR1E LTR MaLR 11 74 -285 5 1319 1554 145 10 27 chr3 96236346 96236644 -63363139 - RLTR28 LTR ERVL -26 498 206 5 1319 498 224 32 5 chr3 96236650 96236755 -63363028 + B1F2 SINE Alu 25 128 -22 5 1319 1962 223 64 35 chr3 96236766 96237222 -63362561 - RMER19C LTR ERVK -5 606 138 5 1319 349 232 63 132 chr3 96237519 96237678 -63362105 - RLTR23 LTR ERV1 -18 412 265 5 1319 257 295 98 60 chr3 96238231 96238582 -63361201 + L1MEc LINE L1 785 1165 -5235 5 1319 865 203 90 15 chr3 96238582 96238782 -63361001 + B3 SINE B2 2 216 0 5 1319 257 295 98 60 chr3 96238782 96238960 -63360823 + L1MEc LINE L1 1166 1334 -5066 5 1319 983 121 0 0 chr3 96239043 96239183 -63360600 + B1_Mur3 SINE Alu 2 141 -8 5 1319 288 0 0 0 chr3 96239187 96239219 -63360564 + (A)n Simple_repeat Simple_repeat 1 32 0 5 1319 380 119 104 0 chr3 96239346 96239413 -63360370 - B1_Mur1 SINE Alu -1 148 75 5 1319 609 42 0 0 chr3 96239894 96239966 -63359817 + tRNA-His-CAY_ tRNA tRNA 1 72 -3 5 1319 387 202 106 0 chr3 96240444 96240548 -63359235 - PB1D10 SINE Alu -2 115 1 5 1319 2376 176 38 5 chr3 96241032 96241459 -63358324 - BGLII_B LTR ERVK 0 441 1 5 1319 1408 137 64 14 chr3 96241459 96241741 -63358042 - MYSERV16_I-int LTR ERVK -1 2325 2030 5 1319 4570 189 142 101 chr3 96241733 96243360 -63356423 - MYSERV16_I-int LTR ERVK -535 1791 99 5 1319 908 346 2 12 chr3 96243355 96243779 -63356004 - MYSERV6-int LTR ERVK -8088 871 452 5 1319 854 228 78 19 chr3 96245135 96245365 -63354418 - BGLII_B LTR ERVK 0 441 167 5 1319 275 159 0 0 chr3 96245439 96245483 -63354300 + U1 snRNA snRNA 61 104 -61 5 1319 23 0 0 0 chr3 96246355 96246378 -63353405 + AT_rich Low_complexity Low_complexity 1 23 0 5 1319 252 227 132 24 chr3 96246873 96246969 -63352814 - B1F SINE Alu -5 112 15 5 1319 423 107 0 0 chr3 96247679 96247754 -63352029 + (TC)n Simple_repeat Simple_repeat 1 75 0 5 1319 574 260 84 51 chr3 96248131 96248346 -63351437 - ORR1D2 LTR MaLR 0 370 149 5 1319 261 146 0 0 chr3 96248346 96248394 -63351389 + (AGGGGG)n Simple_repeat Simple_repeat 3 50 0 5 1319 481 303 103 0 chr3 96248394 96248539 -63351244 - ORR1D2 LTR MaLR -169 190 31 5 1319 253 222 40 40 chr3 96248554 96248629 -63351154 + PB1D9 SINE Alu 3 77 -43 5 1319 1674 141 62 35 chr3 96248838 96249197 -63350586 + RMER1B Other Other 563 910 -156 5 1319 2700 155 62 8 chr3 96249240 96249758 -63350025 + RMER19C LTR ERVK 6 611 0 5 1319 1213 265 159 41 chr3 96249858 96250421 -63349362 + RMER1C Other Other 712 1341 -1 5 1319 224 97 0 0 chr3 96250964 96250995 -63348788 - B1_Mur4 SINE Alu -77 73 43 5 1319 207 0 0 0 chr3 96251183 96251206 -63348577 + (TG)n Simple_repeat Simple_repeat 1 23 0 5 1319 330 291 112 0 chr3 96251502 96251636 -63348147 - B1F SINE Alu 0 149 1 5 1319 212 0 36 0 chr3 96251887 96251915 -63347868 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 5 1319 213 39 0 0 chr3 96252391 96252417 -63347366 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 5 1319 1171 71 17 51 chr3 96252424 96252601 -63347182 - B2_Mm2 SINE B2 -20 175 5 5 1319 757 139 9 0 chr3 96252593 96252708 -63347075 - B1_Mur2 SINE Alu -7 142 27 5 1319 383 265 61 0 chr3 96252951 96253049 -63346734 + B3A SINE B2 47 150 -48 5 1319 258 81 0 0 chr3 96253097 96253134 -63346649 + (CA)n Simple_repeat Simple_repeat 2 38 0 5 1319 363 206 0 14 chr3 96253266 96253335 -63346448 - B1_Mur1 SINE Alu -35 114 47 5 1319 814 163 0 15 chr3 96253465 96253602 -63346181 - B1_Mur2 SINE Alu -8 141 7 5 1319 349 284 27 60 chr3 96253669 96253819 -63345964 - RMER5 LTR ERV1 -65 469 325 5 1319 1319 49 0 12 chr3 96254368 96254534 -63345249 + U1 snRNA snRNA 1 164 -1 5 1319 683 13 0 0 chr3 96255347 96255424 -63344359 + tRNA-Asn-AAC tRNA tRNA 1 77 0 5 1319 207 0 0 0 chr3 96255782 96255805 -63343978 + (CAA)n Simple_repeat Simple_repeat 2 24 0 5 1319 637 28 0 0 chr3 96256417 96256489 -63343294 + tRNA-His-CAY_ tRNA tRNA 1 72 -3 5 1319 225 0 0 0 chr3 96256667 96256692 -63343091 + (TTAA)n Simple_repeat Simple_repeat 4 28 0 5 1319 195 42 0 0 chr3 96256877 96256901 -63342882 + (CTTTG)n Simple_repeat Simple_repeat 1 24 0 5 1319 408 206 168 47 chr3 96257010 96257117 -63342666 + B1_Mus2 SINE Alu 25 144 -3 5 1319 2309 192 160 18 chr3 96257300 96257862 -63341921 + RLTR26 LTR ERVK 1 642 0 5 1319 364 192 171 9 chr3 96258026 96258131 -63341652 - RMER12B LTR ERVK -31 1373 1252 5 1319 223 150 33 0 chr3 96258403 96258463 -63341320 + (TA)n Simple_repeat Simple_repeat 2 63 0 5 1319 527 250 26 26 chr3 96259872 96260024 -63339759 - RMER1B Other Other -110 956 805 5 1319 209 33 33 0 chr3 96260045 96260075 -63339708 + (TA)n Simple_repeat Simple_repeat 2 32 0 5 1319 364 192 171 9 chr3 96260350 96260455 -63339328 + RMER12B LTR ERVK 1252 1373 -31 5 1319 2309 192 160 18 chr3 96260619 96261181 -63338602 - RLTR26 LTR ERVK 0 642 1 5 1319 408 206 168 47 chr3 96261364 96261471 -63338312 - B1_Mus2 SINE Alu -3 144 25 5 1319 195 42 0 0 chr3 96261580 96261604 -63338179 + (CAAAG)n Simple_repeat Simple_repeat 1 24 0 5 1319 225 0 0 0 chr3 96261789 96261814 -63337969 + (TTAA)n Simple_repeat Simple_repeat 1 25 0 5 1319 637 28 0 0 chr3 96261992 96262064 -63337719 - tRNA-His-CAY_ tRNA tRNA -3 72 1 5 1319 207 0 0 0 chr3 96262676 96262699 -63337084 + (TTG)n Simple_repeat Simple_repeat 2 24 0 5 1319 683 13 0 0 chr3 96263057 96263134 -63336649 - tRNA-Asn-AAC tRNA tRNA 0 77 1 5 1319 1319 49 0 12 chr3 96263946 96264112 -63335671 - U1 snRNA snRNA -1 164 1 5 1319 349 284 27 60 chr3 96264661 96264811 -63334972 + RMER5 LTR ERV1 325 469 -65 5 1319 814 163 0 15 chr3 96264878 96265015 -63334768 + B1_Mur2 SINE Alu 7 141 -8 5 1319 363 206 0 14 chr3 96265145 96265214 -63334569 + B1_Mur1 SINE Alu 47 114 -35 5 1319 258 81 0 0 chr3 96265346 96265383 -63334400 + (TG)n Simple_repeat Simple_repeat 2 38 0 5 1319 383 265 61 0 chr3 96265431 96265529 -63334254 - B3A SINE B2 -48 150 47 5 1319 757 139 9 0 chr3 96265772 96265887 -63333896 + B1_Mur2 SINE Alu 27 142 -7 5 1319 1171 71 17 51 chr3 96265879 96266056 -63333727 + B2_Mm2 SINE B2 5 175 -20 5 1319 213 39 0 0 chr3 96266063 96266089 -63333694 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 5 1319 212 0 36 0 chr3 96266565 96266593 -63333190 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 5 1319 330 291 112 0 chr3 96266844 96266978 -63332805 + B1F SINE Alu 1 149 0 5 1319 207 0 0 0 chr3 96267274 96267297 -63332486 + (CA)n Simple_repeat Simple_repeat 1 23 0 5 1319 224 97 0 0 chr3 96267485 96267516 -63332267 + B1_Mur4 SINE Alu 43 73 -77 5 1319 576 93 0 0 chr3 96267891 96267966 -63331817 - tRNA-His-CAY_ tRNA tRNA 0 75 1 5 1319 317 186 0 17 chr3 96268836 96268896 -63330887 + B1_Mur2 SINE Alu 47 105 -44 5 1319 527 252 99 0 chr3 96269123 96269254 -63330529 - B1_Mur2 SINE Alu -5 144 1 5 1319 207 100 0 0 chr3 96269312 96269342 -63330441 + (TTG)n Simple_repeat Simple_repeat 1 30 0 5 1319 1033 275 58 71 chr3 96269392 96269842 -63329941 + MT2A LTR ERVL 1 444 -89 5 1319 2919 186 47 32 chr3 96269835 96270428 -63329355 - RLTR18 LTR ERVK -10 606 5 5 1319 28 29 0 0 chr3 96270442 96270477 -63329306 + AT_rich Low_complexity Low_complexity 1 35 0 5 1319 338 303 0 0 chr3 96270505 96270594 -63329189 - ID_B1 SINE B4 -54 170 82 5 1319 310 302 52 68 chr3 96270597 96270840 -63328943 - L1MEf LINE L1 -4744 1673 1468 5 1319 263 179 86 37 chr3 96270854 96270935 -63328848 - RMER5 LTR ERV1 -132 402 318 5 1319 460 106 0 0 chr3 96270996 96271062 -63328721 - B1_Mus2 SINE Alu -5 142 77 5 1319 294 210 104 82 chr3 96271062 96271131 -63328652 - ID_B1 SINE B4 -5 219 82 5 1319 2383 98 38 158 chr3 96271091 96271461 -63328322 - RLTR44D LTR ERVK -17 469 175 5 1319 315 0 0 0 chr3 96271461 96271496 -63328287 + (CA)n Simple_repeat Simple_repeat 1 35 0 5 1319 2383 98 38 158 chr3 96271496 96271658 -63328125 - RLTR44D LTR ERVK -312 174 3 5 1319 425 217 47 35 chr3 96271685 96271771 -63328012 - PB1D9 SINE Alu -33 87 1 5 1319 1873 154 111 69 chr3 96271870 96271899 -63327884 - MTC LTR MaLR 0 421 384 5 1319 2161 111 151 6 chr3 96271899 96272243 -63327540 - ORR1B1 LTR MaLR 0 394 1 5 1319 1873 154 111 69 chr3 96272243 96272494 -63327289 - MTC LTR MaLR -38 383 121 5 1319 1288 65 29 0 chr3 96272494 96272664 -63327119 + B2_Mm2 SINE B2 2 176 -19 5 1319 414 0 0 0 chr3 96272668 96272714 -63327069 + (TAGA)n Simple_repeat Simple_repeat 1 46 0 5 1319 1873 154 111 69 chr3 96272714 96272831 -63326952 - MTC LTR MaLR -301 120 1 5 1319 3298 112 120 25 chr3 96274952 96275185 -63324598 + MT2B LTR ERVL 1 279 -322 5 1319 5092 109 14 60 chr3 96275185 96276026 -63323757 + RLTR13B4 LTR ERVK 1 803 0 5 1319 3298 112 120 25 chr3 96276026 96276341 -63323442 + MT2B LTR ERVL 280 601 0 5 1319 1058 214 23 28 chr3 96276349 96276464 -63323319 + B3 SINE B2 2 115 -101 5 1319 1599 121 292 3 chr3 96276464 96276762 -63323021 - ORR1C2 LTR MaLR 0 384 1 5 1319 1058 214 23 28 chr3 96276762 96276862 -63322921 + B3 SINE B2 116 216 0 5 1319 810 133 7 13 chr3 96277056 96277208 -63322575 + CT-rich Low_complexity Low_complexity 2 152 0 5 1319 718 189 0 0 chr3 96277218 96277340 -63322443 - B1_Mus2 SINE Alu -22 125 4 5 1319 248 317 147 33 chr3 96277340 96277390 -63322393 - RLTR25A LTR ERVK -621 482 416 5 1319 1217 64 62 28 chr3 96277368 96277544 -63322239 - B2_Mm2 SINE B2 -6 189 8 5 1319 948 158 0 35 chr3 96277542 96277712 -63322071 - URR1A DNA MER1_type -7 219 56 6 1319 223 0 25 75 chr3 96277769 96277787 -63321996 + (TAAA)n Simple_repeat Simple_repeat 3 21 0 6 1319 1247 54 0 0 chr3 96277787 96277935 -63321848 + B1_Mus1 SINE Alu 1 148 0 6 1319 223 0 25 75 chr3 96277935 96277956 -63321827 + (TAAA)n Simple_repeat Simple_repeat 2 20 0 6 1319 221 266 62 15 chr3 96278411 96278476 -63321307 + B1F2 SINE Alu 17 84 -65 6 1319 573 169 15 29 chr3 96278605 96278736 -63321047 - PB1D9 SINE Alu 0 149 18 6 1319 279 254 0 60 chr3 96279396 96279463 -63320320 + tRNA-His-CAY_ tRNA tRNA 5 67 -8 6 1319 478 200 21 10 chr3 96279805 96279901 -63319882 + B1F SINE Alu 1 97 -52 6 1319 292 336 73 53 chr3 96279901 96279948 -63319835 + B4 SINE B4 100 233 -59 6 1319 1205 267 44 19 chr3 96280047 96280368 -63319415 - MTE2a LTR MaLR -8 371 43 6 1319 809 167 80 40 chr3 96280362 96280537 -63319246 + RMER5 LTR ERV1 249 430 -104 6 1319 28 0 0 0 chr3 96280700 96280728 -63319055 + AT_rich Low_complexity Low_complexity 1 28 0 6 1319 2900 9 0 9 chr3 96280740 96281065 -63318718 - RLTRETN_Mm LTR ERVK 0 322 1 6 1319 621 203 43 36 chr3 96281334 96281472 -63318311 + B1_Mur3 SINE Alu 2 140 -9 6 1319 328 229 257 0 chr3 96281576 96281681 -63318102 - B1_Mus2 SINE Alu -3 144 13 6 1319 216 0 0 0 chr3 96281864 96281888 -63317895 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 6 1319 393 220 130 0 chr3 96281888 96281988 -63317795 - B1_Mur2 SINE Alu -27 122 10 6 1319 269 246 0 80 chr3 96281921 96281996 -63317787 - MT2B LTR ERVL -367 234 166 6 1319 630 172 46 0 chr3 96282149 96282276 -63317507 - B1_Mus2 SINE Alu -10 138 5 6 1319 32 0 0 0 chr3 96282572 96282604 -63317179 + AT_rich Low_complexity Low_complexity 1 32 0 6 1319 249 191 15 73 chr3 96282642 96282710 -63317073 - B1_Mur1 SINE Alu 0 149 86 6 1319 249 140 0 0 chr3 96282710 96282767 -63317016 + (TA)n Simple_repeat Simple_repeat 2 58 0 6 1319 281 216 0 0 chr3 96282767 96282818 -63316965 - B1_Mus1 SINE Alu -83 65 15 6 1319 27 0 0 0 chr3 96282832 96282859 -63316924 + AT_rich Low_complexity Low_complexity 1 27 0 6 1319 618 42 0 0 chr3 96283313 96283385 -63316398 + tRNA-Gln-CAG tRNA tRNA 1 72 -3 6 1319 2292 171 33 40 chr3 96283727 96284178 -63315605 - RLTR1D LTR ERV1 -1 604 157 6 1319 960 203 145 69 chr3 96284841 96285239 -63314544 + RMER15 LTR ERVL 22 538 -37 6 1319 841 181 37 53 chr3 96285246 96285433 -63314350 - URR1A DNA MER1_type -5 221 38 6 1319 308 324 9 36 chr3 96285964 96286076 -63313707 + RMER10B LTR ERVL 283 391 -7 6 1319 247 25 24 24 chr3 96286282 96286323 -63313460 + (TTG)n Simple_repeat Simple_repeat 2 42 0 6 1319 1198 41 14 0 chr3 96286342 96286487 -63313296 - B1_Mus2 SINE Alu 0 147 1 6 1319 301 164 0 35 chr3 96286843 96286900 -63312883 - RLTR26 LTR ERVK -578 64 10 6 1319 1202 74 18 0 chr3 96287094 96287257 -63312526 - B2_Mm1a SINE B2 -27 166 1 6 1319 508 258 78 0 chr3 96288054 96288182 -63311601 + ID_B1 SINE B4 87 224 0 6 1319 302 318 123 15 chr3 96288188 96288341 -63311442 + B3 SINE B2 1 167 -49 6 1319 201 121 0 0 chr3 96288341 96288374 -63311409 + (CATA)n Simple_repeat Simple_repeat 4 36 0 6 1319 302 318 123 15 chr3 96288374 96288415 -63311368 + B3 SINE B2 168 216 0 6 1319 604 240 3 13 chr3 96288427 96288567 -63311216 + PB1D9 SINE Alu 2 133 -16 6 1319 211 313 99 50 chr3 96288715 96288836 -63310947 + B1_Mus1 SINE Alu 22 148 0 6 1319 300 200 200 0 chr3 96289083 96289158 -63310625 + 5S rRNA rRNA 1 90 -31 6 1319 1379 43 0 6 chr3 96290477 96290642 -63309141 - U1 snRNA snRNA -1 164 1 6 1319 1127 61 0 0 chr3 96291554 96291701 -63308082 - B1_Mus1 SINE Alu 0 148 2 6 1319 819 238 23 69 chr3 96291704 96291799 -63307984 - RMER19B LTR ERVK -54 848 754 6 1319 186 43 0 0 chr3 96291799 96291822 -63307961 + (G)n Simple_repeat Simple_repeat 1 23 0 6 1319 819 252 10 52 chr3 96291822 96292053 -63307730 - RMER19B LTR ERVK -149 753 642 6 1319 330 209 135 87 chr3 96292101 96292227 -63307556 - RMER5 LTR ERV1 -345 189 58 6 1319 1379 43 0 6 chr3 96292651 96292816 -63306967 + U1 snRNA snRNA 1 164 -1 6 1319 2795 15 95 6 chr3 96293170 96293507 -63306276 - IAPLTR1_Mm LTR ERVK 0 367 1 6 1319 29036 29 1 1 chr3 96293507 96296778 -63303005 - IAPEz-int LTR ERVK 0 6481 3210 6 1319 7788 93 95 11 chr3 96296777 96297978 -63301805 - IAPEz-int LTR ERVK -5168 1313 67 6 1319 1044 125 74 0 chr3 96297949 96298125 -63301658 - IAPEz-int LTR ERVK -6285 196 8 6 1319 2795 15 95 6 chr3 96298125 96298462 -63301321 - IAPLTR1_Mm LTR ERVK 0 367 1 6 1319 200 89 67 0 chr3 96299236 96299281 -63300502 + T-rich Low_complexity Low_complexity 5 52 0 6 1319 2724 58 12 3 chr3 96299288 96299631 -63300152 - ORR1A1 LTR MaLR 0 346 1 6 1319 275 293 13 51 chr3 96299631 96299710 -63300073 - B1_Mur2 SINE Alu -51 98 23 6 1319 220 183 0 32 chr3 96299738 96299800 -63299983 + T-rich Low_complexity Low_complexity 1 60 0 6 1319 535 210 76 42 chr3 96299805 96299949 -63299834 - B1_Mur3 SINE Alu 0 149 1 6 1319 289 197 15 29 chr3 96300898 96300966 -63298817 - PB1D10 SINE Alu -29 88 22 6 1319 657 0 0 0 chr3 96301133 96301206 -63298577 + (CAAAA)n Simple_repeat Simple_repeat 5 77 0 6 1319 674 0 0 0 chr3 96301703 96301777 -63298006 + tRNA-Asn-AAC tRNA tRNA 1 74 -3 6 1319 39 22 0 0 chr3 96302379 96302425 -63297358 + AT_rich Low_complexity Low_complexity 1 46 0 6 1319 659 96 64 0 chr3 96302425 96302519 -63297264 - B2_Mm2 SINE B2 -94 101 2 6 1319 445 200 69 10 chr3 96302780 96302881 -63296902 + PB1D9 SINE Alu 5 111 -9 6 1319 225 0 0 0 chr3 96302979 96303004 -63296779 + (CA)n Simple_repeat Simple_repeat 2 26 0 6 1319 674 0 0 0 chr3 96303433 96303507 -63296276 - tRNA-Lys-AAG tRNA tRNA -2 74 1 6 1319 637 28 0 0 chr3 96304288 96304360 -63295423 - tRNA-His-CAY_ tRNA tRNA -3 72 1 6 1319 666 0 0 0 chr3 96304931 96305003 -63294780 - tRNA-Gly-GGA tRNA tRNA -3 72 1 6 1319 634 0 0 0 chr3 96305369 96305441 -63294342 - tRNA-Glu-GAG_ tRNA tRNA -3 72 1 6 1319 279 79 0 0 chr3 96305499 96305537 -63294246 + (CGTG)n Simple_repeat Simple_repeat 2 39 0 6 1319 246 336 79 21 chr3 96306887 96307027 -63292756 + RMER15 LTR ERVL 424 571 -4 6 1319 397 249 224 6 chr3 96307916 96308086 -63291697 + L1MDa LINE L1 51 257 -6376 6 1319 401 212 120 10 chr3 96308089 96308189 -63291594 + ID_B1 SINE B4 112 222 -2 6 1319 216 333 141 0 chr3 96308213 96308291 -63291492 + ID_B1 SINE B4 81 169 -55 6 1319 369 0 0 0 chr3 96308310 96308351 -63291432 + (TG)n Simple_repeat Simple_repeat 1 41 0 6 1319 328 311 102 12 chr3 96308375 96308541 -63291242 + L1MDa LINE L1 331 511 -6122 6 1319 764 208 0 7 chr3 96308664 96308809 -63290974 + B1_Mur4 SINE Alu 4 147 -3 6 1319 313 267 40 0 chr3 96309288 96309363 -63290420 - ID4 SINE ID -4 79 2 6 1319 430 325 26 0 chr3 96309370 96309487 -63290296 - PB1 SINE Alu -7 120 1 6 1319 586 231 13 89 chr3 96309531 96309688 -63290095 + B1_Mur1 SINE Alu 5 149 0 6 1319 1106 116 59 27 chr3 96309695 96309881 -63289902 + B2_Mm2 SINE B2 1 192 -3 6 1319 892 180 0 7 chr3 96309884 96310035 -63289748 + B1_Mur4 SINE Alu 1 150 0 6 1319 446 245 56 87 chr3 96309893 96310054 -63289729 + B4A SINE B4 94 249 -43 6 1319 542 275 225 0 chr3 96310076 96310258 -63289525 + ID_B1 SINE B4 2 224 0 6 1319 2379 125 5 35 chr3 96310263 96310635 -63289148 - ORR1B2 LTR MaLR -2 365 5 6 1319 511 296 91 46 chr3 96310652 96310893 -63288890 + L1MB5 LINE L1 5463 5714 -460 6 1319 294 292 14 0 chr3 96310993 96311065 -63288718 + BC1_Mm scRNA scRNA 14 86 -66 6 1319 329 264 65 9 chr3 96311210 96311317 -63288466 + PB1D9 SINE Alu 1 113 -7 6 1319 549 205 8 10 chr3 96311333 96311461 -63288322 + B1_Mur1 SINE Alu 22 149 -1 6 1319 272 264 153 15 chr3 96311511 96311642 -63288141 + L1MB5 LINE L1 5922 6070 -104 6 1319 198 0 0 0 chr3 96311714 96311736 -63288047 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 6 1319 618 209 46 15 chr3 96311741 96311872 -63287911 - ID_B1 SINE B4 -9 215 81 6 1319 297 75 0 0 chr3 96311942 96311982 -63287801 + (TTTC)n Simple_repeat Simple_repeat 3 42 0 6 1319 797 154 0 14 chr3 96311984 96312122 -63287661 - B1_Mur4 SINE Alu -1 149 14 6 1319 3668 46 5 0 chr3 96312129 96312563 -63287220 - RLTR10C LTR ERVK 0 436 1 6 1319 46218 13 1 1 chr3 96312563 96317662 -63282121 - MMERVK10C-int LTR ERVK 0 7581 1885 6 1319 309 175 0 0 chr3 96317667 96317724 -63282059 - MMERVK10C-int LTR ERVK -4261 1145 1089 6 1319 670 242 153 72 chr3 96317711 96318097 -63281686 - MMERVK10C-int LTR ERVK -4819 2425 2079 6 1319 910 152 4 177 chr3 96318187 96318458 -63281325 - MMERVK10C-int LTR ERVK -6629 952 729 6 1319 2868 55 0 0 chr3 96318456 96318799 -63280984 - MMERVK10C-int LTR ERVK -7238 343 1 6 1319 3668 46 5 0 chr3 96318799 96319233 -63280550 - RLTR10C LTR ERVK 0 436 1 6 1319 335 103 38 25 chr3 96319253 96319333 -63280450 + (TTTG)n Simple_repeat Simple_repeat 2 82 0 6 1319 586 170 134 54 chr3 96319341 96319490 -63280293 + RMER1A Other Other 280 440 -590 6 1319 240 302 73 0 chr3 96319552 96319648 -63280135 - MER5B DNA MER1_type -62 116 14 6 1319 616 209 72 36 chr3 96320170 96320184 -63279599 - B1_Mur4 SINE Alu 0 150 141 6 1319 216 0 0 0 chr3 96320184 96320208 -63279575 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 6 1319 616 209 72 36 chr3 96320208 96320332 -63279451 - B1_Mur4 SINE Alu -10 140 7 6 1319 342 67 0 0 chr3 96320666 96320711 -63279072 + (TCCCC)n Simple_repeat Simple_repeat 2 46 0 6 1319 663 105 158 0 chr3 96321730 96321844 -63277939 + B1_Mus1 SINE Alu 2 133 -15 6 1319 562 252 0 16 chr3 96321866 96321987 -63277796 + PB1D9 SINE Alu 1 119 -1 6 1319 252 311 0 131 chr3 96321982 96322119 -63277664 - RLTR25A LTR ERVK -464 639 521 6 1319 851 204 0 7 chr3 96322016 96322159 -63277624 - B1_Mus2 SINE Alu -1 146 5 6 1319 432 238 0 87 chr3 96322061 96322176 -63277607 - MT2B LTR ERVL -344 257 153 6 1319 1510 205 60 52 chr3 96322181 96322562 -63277221 - ORR1C2 LTR MaLR 0 384 1 6 1319 278 279 59 0 chr3 96322662 96322730 -63277053 - PB1D10 SINE Alu -10 107 36 6 1319 531 69 0 0 chr3 96322804 96322876 -63276907 + (TC)n Simple_repeat Simple_repeat 1 72 0 6 1319 958 238 20 0 chr3 96322884 96323086 -63276697 - B3 SINE B2 -10 206 1 7 1319 342 256 206 43 chr3 96323381 96323565 -63276218 - L1MC5 LINE L1 -437 7524 7311 7 1319 362 57 19 0 chr3 96323572 96323625 -63276158 + (TTTG)n Simple_repeat Simple_repeat 2 55 0 7 1319 334 175 343 49 chr3 96323626 96323728 -63276055 - PB1D9 SINE Alu -13 137 6 7 1319 306 229 0 14 chr3 96323757 96323828 -63275955 - PB1D10 SINE Alu 0 117 48 7 1319 333 0 0 0 chr3 96323851 96323888 -63275895 + (TTTTG)n Simple_repeat Simple_repeat 4 40 0 7 1319 281 192 0 0 chr3 96323965 96324017 -63275766 - L1MC5 LINE L1 -753 7208 7157 7 1319 2749 203 91 99 chr3 96324102 96325024 -63274759 + RMER17B LTR ERVK 1 915 -43 7 1319 278 359 24 49 chr3 96325178 96325301 -63274482 + PB1D7 SINE Alu 1 120 0 7 1319 556 263 80 0 chr3 96325322 96325459 -63274324 + RSINE1 SINE B4 5 152 -13 7 1319 422 160 0 0 chr3 96325614 96325689 -63274094 - Lx3B LINE L1 -1 6972 6898 7 1319 892 186 0 0 chr3 96325832 96325972 -63273811 - B1_Mur1 SINE Alu -9 140 1 7 1319 356 342 39 6 chr3 96325991 96326147 -63273636 - L1MC5 LINE L1 -1160 6801 6641 7 1319 474 202 60 17 chr3 96326209 96326325 -63273458 - B3 SINE B2 -1 215 95 7 1319 553 224 0 10 chr3 96326414 96326513 -63273270 + PB1D10 SINE Alu 20 117 0 7 1319 556 224 184 12 chr3 96326546 96326709 -63273074 - B3A SINE B2 -5 193 3 7 1319 231 138 15 108 chr3 96326957 96327022 -63272761 - B3 SINE B2 0 216 158 7 1319 735 278 25 0 chr3 96327022 96327220 -63272563 - B3 SINE B2 -13 203 1 7 1319 3199 48 5 12 chr3 96327331 96327734 -63272049 - MTB LTR MaLR 0 400 1 7 1319 444 261 129 34 chr3 96327768 96327915 -63271868 + RSINE1 SINE B4 3 163 -2 7 1319 291 54 0 0 chr3 96328028 96328065 -63271718 + (TG)n Simple_repeat Simple_repeat 1 37 0 7 1319 304 270 14 0 chr3 96329497 96329571 -63270212 - ID4_ SINE ID -7 76 2 7 1319 200 73 0 68 chr3 96330592 96330636 -63269147 + (TGGGGG)n Simple_repeat Simple_repeat 2 42 0 7 1319 40 37 0 0 chr3 96331221 96331275 -63268508 + GC_rich Low_complexity Low_complexity 1 54 0 7 1319 282 167 0 0 chr3 96331742 96331802 -63267981 + GA-rich Low_complexity Low_complexity 1 60 0 7 1319 266 270 50 0 chr3 96333320 96333409 -63266374 - B1_Mus1 SINE Alu 0 120 23 7 1319 530 285 47 24 chr3 96333458 96333627 -63266156 + B3 SINE B2 42 214 -2 7 1319 1092 250 157 53 chr3 96333636 96334112 -63265671 - RLTR20C LTR ERVK -12 556 1 7 1319 270 0 0 0 chr3 96334116 96334146 -63265637 + (CA)n Simple_repeat Simple_repeat 2 31 0 7 1319 372 288 56 35 chr3 96334217 96334361 -63265422 - MIR SINE MIR -101 161 15 7 1319 282 164 0 0 chr3 96334797 96334811 -63264972 + (TG)n Simple_repeat Simple_repeat 1 14 0 7 1319 288 102 0 0 chr3 96334811 96334860 -63264923 + (TCTCTG)n Simple_repeat Simple_repeat 6 54 0 7 1319 282 164 0 0 chr3 96334860 96334912 -63264871 + (TG)n Simple_repeat Simple_repeat 1 52 0 7 1319 628 230 242 0 chr3 96334975 96335153 -63264630 - ID_B1 SINE B4 -1 223 3 7 1319 843 261 91 9 chr3 96335426 96335646 -63264137 + B4A SINE B4 4 241 -51 7 1319 311 270 28 57 chr3 96335756 96335862 -63263921 - RMER15 LTR ERVL -70 505 403 7 1319 984 147 128 29 chr3 96335944 96336148 -63263635 - URR1A DNA MER1_type 0 226 3 7 1319 240 295 89 13 chr3 96336364 96336443 -63263340 + RSINE1 SINE B4 45 129 -36 7 1319 783 226 40 5 chr3 96336517 96336717 -63263066 + B3 SINE B2 4 210 -6 7 1319 558 200 0 76 chr3 96336890 96336994 -63262789 + B1_Mur1 SINE Alu 40 136 -13 7 1319 211 28 27 27 chr3 96336994 96337031 -63262752 + (CAAAA)n Simple_repeat Simple_repeat 2 38 0 7 1319 558 200 0 76 chr3 96337031 96337045 -63262738 + B1_Mur1 SINE Alu 137 149 0 7 1319 544 229 41 95 chr3 96337261 96337430 -63262353 - B4 SINE B4 -49 243 84 7 1319 725 206 30 0 chr3 96337479 96337610 -63262173 - RSINE1 SINE B4 -20 145 11 7 1319 455 195 187 49 chr3 96337642 96337778 -63262005 - B1_Mur2 SINE Alu 0 150 22 7 1319 1476 160 113 21 chr3 96337778 96337795 -63261988 + MTD LTR MaLR 1 21 -398 7 1319 194 0 39 0 chr3 96337795 96337821 -63261962 + (TTG)n Simple_repeat Simple_repeat 3 29 0 7 164 1476 160 113 21 chr3 96337821 96338129 -63261654 + MTD LTR MaLR 22 356 -63 7 1320 395 297 57 19 chr3 96338166 96338324 -63261459 - B3A SINE B2 -24 174 11 7 1320 743 199 0 7 chr3 96338338 96338475 -63261308 - B3 SINE B2 0 216 81 7 1320 2006 161 143 0 chr3 96338477 96338862 -63260921 - BGLII_B LTR ERVK -1 440 1 7 1320 4656 131 41 72 chr3 96338862 96339029 -63260754 - MYSERV16_I-int LTR ERVK -2 2324 2152 7 1320 1526 58 0 16 chr3 96339029 96339222 -63260561 - B2_Mm1a SINE B2 -2 191 2 7 1320 4656 131 41 72 chr3 96339222 96339448 -63260335 - MYSERV16_I-int LTR ERVK -175 2151 1937 7 1320 1058 89 0 27 chr3 96339448 96339598 -63260185 + B1_Mus2 SINE Alu 2 147 0 7 1320 4656 131 41 72 chr3 96339598 96340125 -63259658 - MYSERV16_I-int LTR ERVK -390 1936 1431 7 1320 1419 64 0 11 chr3 96340125 96340314 -63259469 + B2_Mm2 SINE B2 9 195 0 7 1320 3796 222 121 55 chr3 96340318 96341603 -63258180 - MYSERV16_I-int LTR ERVK -882 1444 74 7 1320 1186 68 7 0 chr3 96341623 96341770 -63258013 - B1_Mus1 SINE Alu 0 148 1 7 1320 686 90 306 0 chr3 96341799 96341910 -63257873 - B1_Mm SINE Alu 0 147 3 7 1320 1212 79 79 0 chr3 96341910 96342088 -63257695 - B2_Mm1t SINE B2 0 193 2 7 1320 3063 196 41 2 chr3 96342093 96342702 -63257081 - MYSERV6-int LTR ERVK -4368 4591 3959 7 1320 5672 264 66 38 chr3 96342698 96344549 -63255234 - MYSERV6-int LTR ERVK -6397 2562 661 7 1320 397 289 136 77 chr3 96344782 96345209 -63254574 - L1MDa LINE L1 -5034 1599 1148 7 1320 1665 144 245 6 chr3 96345968 96346011 -63253772 - BGLII_B LTR ERVK -1 440 397 7 1320 204 40 0 0 chr3 96346011 96346036 -63253747 + (CA)n Simple_repeat Simple_repeat 2 26 0 7 1320 1665 144 245 6 chr3 96346036 96346347 -63253436 - BGLII_B LTR ERVK -45 396 1 7 1320 1078 72 134 29 chr3 96346402 96346574 -63253209 + B2_Mm2 SINE B2 2 191 -4 7 1320 341 296 0 22 chr3 96346593 96346683 -63253100 - B4A SINE B4 -195 97 10 7 1320 207 0 0 0 chr3 96346908 96346931 -63252852 + (CAGA)n Simple_repeat Simple_repeat 2 24 0 7 1320 1043 212 32 0 chr3 96346931 96347148 -63252635 + ID_B1 SINE B4 1 224 0 7 1320 723 263 52 0 chr3 96347152 96347346 -63252437 + B3 SINE B2 2 205 -11 7 1320 366 332 108 80 chr3 96347495 96347763 -63252020 - RMER15 LTR ERVL -60 515 113 7 1320 1026 39 0 0 chr3 96347763 96347890 -63251893 - B1_Mus1 SINE Alu -20 128 2 7 1320 477 237 125 7 chr3 96347890 96347923 -63251860 - B4A SINE B4 -201 91 43 7 1320 366 332 108 80 chr3 96347923 96347996 -63251787 - RMER15 LTR ERVL -60 112 1 7 1320 313 200 0 16 chr3 96348134 96348195 -63251588 - MLT1A1 LTR MaLR -13 395 336 7 1320 494 222 0 57 chr3 96348851 96348956 -63250827 - B1_Mus2 SINE Alu 0 147 49 7 1320 741 159 7 14 chr3 96349073 96349213 -63250570 + B1_Mur4 SINE Alu 12 150 0 7 1320 846 101 78 0 chr3 96349353 96349482 -63250301 - B1_Mus1 SINE Alu -7 141 3 7 1320 267 93 0 0 chr3 96349599 96349642 -63250141 + (CA)n Simple_repeat Simple_repeat 1 43 0 7 1320 636 14 0 0 chr3 96349750 96349823 -63249960 + (TTCC)n Simple_repeat Simple_repeat 4 76 0 7 1320 684 185 0 5 chr3 96349823 96349943 -63249840 - B1_Mus1 SINE Alu -30 117 3 7 1320 910 286 71 0 chr3 96350032 96350284 -63249499 + Lx8 LINE L1 6395 6664 -809 7 1320 782 149 0 8 chr3 96350473 96350595 -63249188 + B1_Mur4 SINE Alu 18 138 -12 7 1320 251 246 46 0 chr3 96350574 96350639 -63249144 - MT2B LTR ERVL -376 225 158 7 1320 327 166 0 5 chr3 96350698 96350761 -63249022 + B1F SINE Alu 89 149 0 7 1320 1865 169 124 0 chr3 96350882 96351254 -63248529 + MTD LTR MaLR 1 418 -1 7 1320 28 48 0 0 chr3 96351337 96351379 -63248404 + AT_rich Low_complexity Low_complexity 1 42 0 7 1320 295 217 14 0 chr3 96351520 96351589 -63248194 - B3A SINE B2 -128 70 1 7 1320 496 211 29 0 chr3 96351742 96351846 -63247937 - PB1D7 SINE Alu -7 113 7 7 1320 248 206 29 115 chr3 96351757 96351861 -63247922 - MT2B LTR ERVL -350 251 157 7 1320 342 98 0 0 chr3 96352156 96352207 -63247576 + (TG)n Simple_repeat Simple_repeat 2 52 0 7 1320 262 352 68 0 chr3 96352383 96352471 -63247312 + PB1D10 SINE Alu 2 95 -22 7 1320 295 281 0 58 chr3 96352424 96352511 -63247272 + ID_B1 SINE B4 130 211 -13 7 1320 266 123 18 0 chr3 96352541 96352598 -63247185 + (CAGA)n Simple_repeat Simple_repeat 1 58 0 7 1320 1141 62 21 0 chr3 96352780 96352925 -63246858 - B1_Mus1 SINE Alu 0 148 1 7 1320 370 291 93 16 chr3 96352927 96353056 -63246727 - B1F SINE Alu -1 148 10 7 1320 651 147 0 60 chr3 96353086 96353202 -63246581 - PB1D9 SINE Alu -2 118 10 7 1320 230 56 0 27 chr3 96353238 96353275 -63246508 + (TTTG)n Simple_repeat Simple_repeat 3 38 0 7 1320 297 297 0 0 chr3 96353300 96353364 -63246419 + B3 SINE B2 136 199 -17 7 1320 1459 143 9 0 chr3 96353600 96353823 -63245960 + URR1B DNA MER1_type 1 225 0 7 1320 237 239 28 56 chr3 96353870 96353941 -63245842 + ID_B1 SINE B4 119 187 -37 7 1320 740 200 101 22 chr3 96353963 96354142 -63245641 - ID_B1 SINE B4 -26 198 6 7 1320 466 209 35 0 chr3 96354168 96354254 -63245529 - PB1D7 SINE Alu -8 112 24 7 1320 471 235 43 0 chr3 96354751 96354866 -63244917 - PB1D9 SINE Alu 0 120 1 7 1320 567 256 35 28 chr3 96354873 96355059 -63244724 - B3 SINE B2 -10 185 7 7 1320 222 171 0 0 chr3 96355059 96355100 -63244683 + CT-rich Low_complexity Low_complexity 4 44 0 7 1320 1223 48 0 0 chr3 96356291 96356438 -63243345 + B1_Mm SINE Alu 1 147 0 7 1320 273 57 0 0 chr3 96356438 96356473 -63243310 + (A)n Simple_repeat Simple_repeat 1 35 0 7 1320 207 0 0 0 chr3 96356688 96356711 -63243072 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 7 1320 507 153 0 0 chr3 96356711 96356787 -63242996 - B1_Mus2 SINE Alu -8 139 64 8 1320 313 220 0 0 chr3 96356795 96356854 -63242929 - B3 SINE B2 -157 59 1 8 1320 420 279 116 15 chr3 96356936 96357128 -63242655 + B3A SINE B2 2 216 0 8 1320 473 109 345 0 chr3 96357372 96357482 -63242301 + URR1A DNA MER1_type 79 226 0 8 1320 392 179 59 12 chr3 96358028 96358113 -63241670 - B3A SINE B2 -108 90 2 8 1320 334 242 120 50 chr3 96358178 96358278 -63241505 - B1F SINE Alu -19 108 2 8 1320 226 269 37 37 chr3 96358284 96358365 -63241418 + MIRc SINE MIR 43 123 -145 8 1320 822 71 98 0 chr3 96358539 96358651 -63241132 - B2_Mm2 SINE B2 -71 124 2 8 1320 470 165 12 12 chr3 96358682 96358762 -63241021 + ID_B1 SINE B4 145 224 0 8 1320 269 220 0 48 chr3 96358783 96358845 -63240938 - PB1D9 SINE Alu 0 120 62 8 1320 261 119 0 0 chr3 96359250 96359292 -63240491 + (TG)n Simple_repeat Simple_repeat 1 42 0 8 1320 231 266 47 0 chr3 96359771 96359835 -63239948 - RSINE1 SINE B4 -62 103 37 8 1320 416 221 210 14 chr3 96359867 96360005 -63239778 + B3 SINE B2 1 165 -51 8 1320 231 103 0 0 chr3 96360590 96360629 -63239154 + (TGGGGG)n Simple_repeat Simple_repeat 3 41 0 8 1320 183 204 0 0 chr3 96360893 96360937 -63238846 + T-rich Low_complexity Low_complexity 1 44 0 8 1320 216 0 0 0 chr3 96364419 96364443 -63235340 + (CAA)n Simple_repeat Simple_repeat 2 25 0 8 1320 384 117 128 13 chr3 96365267 96365345 -63234438 - B1_Mm SINE Alu -40 107 21 8 1320 392 254 88 42 chr3 96366076 96366220 -63233563 - RSINE1 SINE B4 -3 162 2 8 1320 283 222 217 24 chr3 96366543 96366626 -63233157 - PB1D7 SINE Alu 0 120 22 8 1320 625 144 182 8 chr3 96366779 96366905 -63232878 - B1_Mur4 SINE Alu -2 148 1 8 1320 347 244 43 128 chr3 96367175 96367316 -63232467 + ID_B1 SINE B4 70 198 -26 8 1320 431 278 29 29 chr3 96367208 96367345 -63232438 + B1F1 SINE Alu 9 145 -4 8 1320 1094 44 0 0 chr3 96367485 96367620 -63232163 + B1_Mus2 SINE Alu 13 147 0 8 1320 202 193 35 17 chr3 96367620 96367678 -63232105 + (CAAA)n Simple_repeat Simple_repeat 4 62 0 8 1320 211 312 24 121 chr3 96367786 96367910 -63231873 - PB1D10 SINE Alu -1 116 5 8 1320 545 300 24 24 chr3 96367820 96367984 -63231799 - ID_B1 SINE B4 -51 173 10 8 1320 180 0 0 0 chr3 96368380 96368400 -63231383 + (CCCCAG)n Simple_repeat Simple_repeat 2 21 0 8 1320 266 252 59 67 chr3 96368426 96368545 -63231238 - PB1D7 SINE Alu 0 120 3 8 1320 228 215 67 106 chr3 96369109 96369213 -63230570 + MT2B LTR ERVL 154 253 -348 8 1320 333 256 89 0 chr3 96369128 96369218 -63230565 + PB1D10 SINE Alu 5 102 -15 8 1320 916 143 14 7 chr3 96369236 96369384 -63230399 + B1_Mur4 SINE Alu 1 149 -1 8 1320 640 265 21 94 chr3 96369410 96369643 -63230140 + ID_B1 SINE B4 3 218 -6 8 1320 213 108 0 0 chr3 96369900 96369937 -63229846 + (TC)n Simple_repeat Simple_repeat 1 37 0 8 1320 432 0 0 0 chr3 96369937 96369985 -63229798 + (TG)n Simple_repeat Simple_repeat 2 49 0 8 1320 690 298 23 57 chr3 96369997 96370260 -63229523 - B4 SINE B4 -36 256 3 8 1320 2092 156 88 5 chr3 96370551 96370925 -63228858 - MTD LTR MaLR -14 405 1 8 1320 216 372 70 9 chr3 96370932 96371046 -63228737 + MIR SINE MIR 3 123 -139 8 1320 271 268 0 11 chr3 96371087 96371174 -63228609 - B3 SINE B2 -6 210 125 8 1320 189 183 0 0 chr3 96371184 96371244 -63228539 + (CA)n Simple_repeat Simple_repeat 1 60 0 8 1320 675 244 204 18 chr3 96371261 96371482 -63228301 - B4A SINE B4 -10 282 21 8 1320 523 257 0 0 chr3 96371506 96371615 -63228168 - PB1D7 SINE Alu 0 120 12 8 1320 393 22 0 0 chr3 96371624 96371670 -63228113 + (TG)n Simple_repeat Simple_repeat 2 47 0 8 1320 207 290 32 16 chr3 96371784 96371847 -63227936 + MIR SINE MIR 125 188 -74 8 1320 396 264 179 16 chr3 96371861 96371984 -63227799 + RSINE1 SINE B4 21 163 -2 8 1320 213 289 0 0 chr3 96371986 96372031 -63227752 + (CA)n Simple_repeat Simple_repeat 1 45 0 8 1320 766 190 72 56 chr3 96372038 96372233 -63227550 + B3A SINE B2 1 198 0 8 1320 247 105 0 81 chr3 96372249 96372278 -63227505 + T-rich Low_complexity Low_complexity 33 60 0 8 1320 1180 62 7 0 chr3 96372278 96372424 -63227359 - B1_Mus2 SINE Alu 0 147 1 8 1320 247 105 0 81 chr3 96372424 96372456 -63227327 + T-rich Low_complexity Low_complexity 4 32 0 8 1320 419 176 30 129 chr3 96372456 96372685 -63227098 - RMER17B LTR ERVK -392 514 68 8 1320 236 283 0 0 chr3 96372755 96372801 -63226982 + RSINE1 SINE B4 88 133 -32 8 1320 245 98 0 24 chr3 96372927 96372969 -63226814 + (TTCC)n Simple_repeat Simple_repeat 3 43 0 8 1320 770 164 83 26 chr3 96373008 96373164 -63226619 - B3 SINE B2 -10 206 42 8 1320 787 136 23 8 chr3 96374522 96374655 -63225128 - B1_Mus1 SINE Alu -12 136 2 8 1320 274 208 0 65 chr3 96375038 96375115 -63224668 + PB1D10 SINE Alu 5 76 -41 8 1320 407 182 21 14 chr3 96375152 96375297 -63224486 + GA-rich Low_complexity Low_complexity 1 146 0 8 1320 487 270 31 68 chr3 96375303 96375466 -63224317 + RSINE1 SINE B4 8 164 -1 8 1320 675 173 0 0 chr3 96375488 96375592 -63224191 + ID_B1 SINE B4 108 211 -13 8 1320 593 61 12 0 chr3 96375594 96375676 -63224107 + (CATA)n Simple_repeat Simple_repeat 4 86 0 8 1320 441 0 0 0 chr3 96376232 96376281 -63223502 + (TG)n Simple_repeat Simple_repeat 2 50 0 8 1320 291 157 59 0 chr3 96376281 96376325 -63223458 - PB1D7 SINE Alu -8 112 66 8 1320 480 174 10 71 chr3 96376325 96376380 -63223403 - ID_B1 SINE B4 -9 215 123 8 1320 253 218 116 83 chr3 96376393 96376484 -63223299 + B1F2 SINE Alu 2 92 -55 8 1320 1266 27 0 0 chr3 96376497 96376644 -63223139 + B1_Mus2 SINE Alu 1 147 0 8 1320 297 229 87 63 chr3 96376671 96376827 -63222956 + B4A SINE B4 4 173 -119 8 1320 245 392 0 58 chr3 96376805 96376908 -63222875 + B4 SINE B4 192 288 -4 8 1320 872 184 0 13 chr3 96377074 96377223 -63222560 - B1_Mur2 SINE Alu -1 148 2 8 1320 309 340 0 21 chr3 96377223 96377319 -63222464 + PB1D7 SINE Alu 27 120 0 8 1320 436 263 112 8 chr3 96377328 96377462 -63222321 + B1F SINE Alu 1 148 -1 8 1320 21 0 0 0 chr3 96377595 96377616 -63222167 + GC_rich Low_complexity Low_complexity 1 21 0 8 1320 372 94 0 0 chr3 96378705 96378758 -63221025 + (T)n Simple_repeat Simple_repeat 1 53 0 8 1320 530 77 3 15 chr3 96378760 96378844 -63220939 - B1_Mus2 SINE Alu 0 147 42 8 1320 252 242 29 78 chr3 96378844 96378861 -63220922 - ID_B1 SINE B4 0 222 127 8 1320 391 250 0 13 chr3 96378944 96379021 -63220762 - ID4 SINE ID -3 80 5 8 1320 458 220 110 0 chr3 96379921 96380039 -63219744 + RSINE1 SINE B4 9 139 -26 8 1320 198 0 0 0 chr3 96380072 96380094 -63219689 + (A)n Simple_repeat Simple_repeat 1 22 0 8 1320 189 0 0 0 chr3 96381437 96381458 -63218325 + (CA)n Simple_repeat Simple_repeat 1 21 0 8 1320 357 253 37 75 chr3 96381491 96381620 -63218163 + PB1 SINE Alu 10 148 -1 8 1320 676 199 30 8 chr3 96381975 96382107 -63217676 + ID_B1 SINE B4 90 224 0 8 1320 1098 48 6 76 chr3 96382110 96382267 -63217516 + B1_Mus2 SINE Alu 1 146 -1 8 1320 918 223 20 0 chr3 96382640 96382842 -63216941 - B3 SINE B2 -10 206 1 8 1320 835 200 32 0 chr3 96382885 96383040 -63216743 - RSINE1 SINE B4 -2 163 4 8 1320 611 258 16 0 chr3 96383144 96383272 -63216511 + RSINE1 SINE B4 1 130 -35 8 1320 249 83 0 0 chr3 96383276 96383312 -63216471 + (CA)n Simple_repeat Simple_repeat 1 36 0 8 1320 475 274 123 7 chr3 96383319 96383473 -63216310 + B3A SINE B2 9 180 -18 8 1320 369 229 56 50 chr3 96383484 96383609 -63216174 + PB1D9 SINE Alu 2 149 0 8 1320 318 205 0 0 chr3 96383719 96383802 -63215981 + CT-rich Low_complexity Low_complexity 1 83 0 8 1320 276 77 0 0 chr3 96384083 96384122 -63215661 + (TG)n Simple_repeat Simple_repeat 1 39 0 8 1320 211 189 293 13 chr3 96384140 96384215 -63215568 - RSINE1 SINE B4 -62 103 8 8 1320 239 306 82 8 chr3 96385026 96385148 -63214635 + MIRc SINE MIR 2 132 -136 8 1320 322 247 25 0 chr3 96386277 96386358 -63213425 - ID SINE ID -140 84 2 8 1320 855 160 20 14 chr3 96386387 96386533 -63213250 + B1_Mus1 SINE Alu 2 148 0 8 1320 28 61 0 0 chr3 96386554 96386603 -63213180 + AT_rich Low_complexity Low_complexity 1 49 0 8 1320 486 239 72 7 chr3 96386608 96386747 -63213036 + B1F1 SINE Alu 1 148 -1 8 1320 738 266 30 16 chr3 96386747 96386932 -63212851 + B3A SINE B2 4 185 -10 8 1320 650 279 67 0 chr3 96386935 96387114 -63212669 + B3A SINE B2 8 198 0 8 1320 508 255 107 42 chr3 96387142 96387310 -63212473 + B3A SINE B2 4 182 -16 8 1320 810 199 21 113 chr3 96387353 96387428 -63212355 - B3 SINE B2 0 216 164 8 1320 441 0 0 0 chr3 96387428 96387477 -63212306 + (CA)n Simple_repeat Simple_repeat 1 49 0 8 1320 810 199 21 113 chr3 96387477 96387639 -63212144 - B3 SINE B2 -53 163 1 8 1320 417 190 189 42 chr3 96387639 96387772 -63212011 + L1MC3 LINE L1 6944 7101 -684 8 1320 399 51 0 33 chr3 96387983 96388044 -63211739 - B1_Mur4 SINE Alu -1 149 91 8 1320 344 315 23 23 chr3 96388087 96388220 -63211563 - ID_B1 SINE B4 0 224 92 9 1320 291 235 59 0 chr3 96388253 96388321 -63211462 - PB1D10 SINE Alu -14 103 32 9 1320 1128 261 92 12 chr3 96388344 96388759 -63211024 + L1MC3 LINE L1 7317 7764 -21 8 1320 371 311 0 54 chr3 96388918 96389030 -63210753 + B1F SINE Alu 1 106 -43 9 1320 330 279 0 0 chr3 96389025 96389093 -63210690 - ID_B1 SINE B4 -73 151 84 9 1320 245 290 65 32 chr3 96389140 96389307 -63210476 + B4 SINE B4 10 231 -61 9 1320 1258 96 0 0 chr3 96389545 96389711 -63210072 + B2_Mm2 SINE B2 2 167 -28 9 1320 486 298 112 63 chr3 96389997 96390266 -63209517 + Lx8 LINE L1 6685 6966 -507 9 1320 766 176 64 29 chr3 96390418 96390558 -63209225 + B1_Mur4 SINE Alu 6 150 0 9 1320 391 257 93 22 chr3 96390909 96391048 -63208735 + B1F SINE Alu 1 149 0 9 1320 327 49 0 0 chr3 96391053 96391094 -63208689 + (CAGC)n Simple_repeat Simple_repeat 1 41 0 9 1320 1386 167 114 23 chr3 96391170 96391513 -63208270 - ORR1D1 LTR MaLR 0 374 1 9 1320 233 286 0 0 chr3 96391795 96391865 -63207918 + ID4 SINE ID 4 73 -10 9 1320 220 292 62 0 chr3 96391880 96391945 -63207838 + B4A SINE B4 77 145 -147 9 1320 332 300 13 0 chr3 96391890 96391971 -63207812 + PB1D10 SINE Alu 5 88 -32 9 1320 396 0 0 0 chr3 96391971 96392015 -63207768 + (TAAA)n Simple_repeat Simple_repeat 1 44 0 9 1320 480 136 42 34 chr3 96392030 96392147 -63207636 + B1_Mur2 SINE Alu 2 141 -8 9 1320 360 0 0 0 chr3 96392219 96392259 -63207524 + (TTTA)n Simple_repeat Simple_repeat 2 41 0 9 1320 696 188 17 0 chr3 96392259 96392376 -63207407 - B1_Mus1 SINE Alu -12 136 18 9 1320 23 0 0 0 chr3 96392396 96392419 -63207364 + AT_rich Low_complexity Low_complexity 1 23 0 9 1320 227 103 0 25 chr3 96392575 96392615 -63207168 + (TATG)n Simple_repeat Simple_repeat 4 42 0 9 1320 2375 182 66 122 chr3 96392627 96393578 -63206205 + RMER6C LTR ERVK 57 755 -1 9 1320 410 326 58 82 chr3 96393606 96393900 -63205883 - B4 SINE B4 0 292 6 9 1320 1747 179 71 39 chr3 96393975 96394381 -63205402 + MTD LTR MaLR 1 419 0 9 1320 185 97 31 46 chr3 96394419 96394484 -63205299 + T-rich Low_complexity Low_complexity 6 69 0 9 1320 1184 74 0 0 chr3 96394484 96394632 -63205151 - B1_Mus1 SINE Alu 0 148 1 9 1320 418 277 76 55 chr3 96394756 96394801 -63204982 + B1F SINE Alu 1 53 -96 9 1320 1441 47 0 123 chr3 96394801 96395020 -63204763 + B2_Mm1a SINE B2 2 193 0 9 1320 418 277 76 55 chr3 96395020 96395119 -63204664 + B1F SINE Alu 54 148 -1 9 1320 848 81 0 24 chr3 96395183 96395310 -63204473 + B1_Mus2 SINE Alu 24 147 0 9 1320 1306 65 32 11 chr3 96395328 96395514 -63204269 + B2_Mm2 SINE B2 6 195 0 9 1320 412 271 45 26 chr3 96395789 96395944 -63203839 + RSINE1 SINE B4 2 159 -6 9 1320 897 228 15 10 chr3 96396119 96396323 -63203460 + B3 SINE B2 5 209 -7 9 1320 289 330 91 54 chr3 96396336 96396425 -63203358 + ID_B1 SINE B4 6 105 -119 9 1320 195 42 0 0 chr3 96396425 96396449 -63203334 + (CAA)n Simple_repeat Simple_repeat 3 26 0 9 1320 289 330 91 54 chr3 96396449 96396545 -63203238 + ID_B1 SINE B4 106 197 -27 9 1320 341 230 58 39 chr3 96396776 96396880 -63202903 + PB1D10 SINE Alu 5 110 -7 9 1320 245 258 30 0 chr3 96396930 96396996 -63202787 + L2a LINE L2 3346 3413 -13 9 1320 333 289 11 0 chr3 96397316 96397406 -63202377 + PB1D10 SINE Alu 24 114 -3 9 1320 303 244 0 71 chr3 96397466 96397550 -63202233 + RSINE1 SINE B4 88 165 0 9 1320 1362 0 18 23 chr3 96398457 96398800 -63200983 + (CA)n Simple_repeat Simple_repeat 1 340 0 9 1320 306 39 58 0 chr3 96398862 96398914 -63200869 + (CA)n Simple_repeat Simple_repeat 1 55 0 9 1320 332 253 16 8 chr3 96398971 96399065 -63200718 - PB1D10 SINE Alu -2 125 37 9 1320 279 293 199 7 chr3 96399384 96399525 -63200258 + MIRb SINE MIR 85 252 -16 9 1320 193 340 148 10 chr3 96404467 96404568 -63195215 + MIRb SINE MIR 109 223 -45 9 1320 348 302 68 30 chr3 96404598 96404731 -63195052 + MIR3 SINE MIR 58 195 -13 9 1320 187 73 0 68 chr3 96405226 96405270 -63194513 + (CCCCCG)n Simple_repeat Simple_repeat 6 46 0 9 1320 24 53 0 0 chr3 96405281 96405319 -63194464 + GC_rich Low_complexity Low_complexity 1 38 0 9 1320 369 162 0 0 chr3 96405533 96405601 -63194182 + (CA)n Simple_repeat Simple_repeat 2 69 0 9 1320 251 190 272 68 chr3 96406551 96406693 -63193090 + MIRb SINE MIR 16 168 -40 9 1320 315 0 0 0 chr3 96407690 96407725 -63192058 + (CA)n Simple_repeat Simple_repeat 1 35 0 9 1320 626 248 27 20 chr3 96407828 96407976 -63191807 - B1F1 SINE Alu 0 149 1 9 1320 219 289 58 35 chr3 96408230 96408316 -63191467 + MIRc SINE MIR 1 88 -180 9 1320 1249 178 5 18 chr3 96408363 96408580 -63191203 - B3 SINE B2 0 216 3 9 1320 327 295 22 122 chr3 96408710 96408849 -63190934 - MLT1C LTR MaLR -2 465 341 9 1320 972 41 8 0 chr3 96408773 96408895 -63190888 + B1_Mm SINE Alu 25 147 0 9 1320 500 262 32 24 chr3 96408920 96409045 -63190738 + ID_B1 SINE B4 82 207 -17 9 1320 370 264 157 0 chr3 96409059 96409199 -63190584 - MLT1D LTR MaLR -67 438 277 9 1320 485 213 16 115 chr3 96409284 96409406 -63190377 - B1_Mur1 SINE Alu 0 149 40 9 1320 237 308 87 11 chr3 96409448 96409540 -63190243 - MLT1D LTR MaLR -400 105 7 9 1320 279 0 0 0 chr3 96409817 96409848 -63189935 + (CA)n Simple_repeat Simple_repeat 2 32 0 9 1320 1578 37 5 5 chr3 96409913 96410104 -63189679 - B2_Mm1t SINE B2 -2 191 1 9 1320 265 234 213 0 chr3 96410111 96410205 -63189578 - PB1D10 SINE Alu -1 116 3 9 1320 307 254 11 90 chr3 96410213 96410339 -63189444 - ID4_ SINE ID -33 119 6 9 1320 272 286 19 58 chr3 96410419 96410431 -63189352 - ID_B1 SINE B4 -1 223 124 9 1320 685 76 22 0 chr3 96410431 96410523 -63189260 - B1_Mur4 SINE Alu -13 137 44 9 1320 352 234 173 24 chr3 96410838 96410852 -63188931 + ID_B1 SINE B4 78 223 -1 9 1320 630 115 186 0 chr3 96410852 96410965 -63188818 + B1_Mus2 SINE Alu 14 147 0 9 1320 252 143 0 0 chr3 96411261 96411303 -63188480 + (GAAA)n Simple_repeat Simple_repeat 2 43 0 9 1320 408 293 97 8 chr3 96412650 96412784 -63186999 - LTR40c LTR ERVL -159 306 161 9 1320 369 293 59 15 chr3 96412800 96412935 -63186848 - B1F SINE Alu -2 147 7 9 1320 409 237 141 26 chr3 96412939 96413095 -63186688 - LTR40c LTR ERVL -289 176 3 9 1320 211 233 23 0 chr3 96413310 96413353 -63186430 + B1F SINE Alu 13 56 -93 9 1320 841 206 113 5 chr3 96413371 96413556 -63186227 + B3 SINE B2 1 205 -11 9 1320 681 297 18 45 chr3 96413752 96413974 -63185809 - B4A SINE B4 -76 216 1 9 1320 594 135 180 0 chr3 96413999 96414096 -63185687 - MTD LTR MaLR -8 411 295 9 1320 606 244 121 59 chr3 96414096 96414158 -63185625 - MT2B LTR ERVL 0 601 540 9 1320 315 0 0 0 chr3 96414158 96414193 -63185590 + (TG)n Simple_repeat Simple_repeat 1 35 0 9 1320 372 43 0 0 chr3 96414193 96414238 -63185545 + (GA)n Simple_repeat Simple_repeat 1 46 0 9 1320 606 244 121 59 chr3 96414238 96414413 -63185370 - MT2B LTR ERVL -62 539 349 9 1320 762 176 303 0 chr3 96414421 96414586 -63185197 + B3 SINE B2 2 216 0 9 1320 369 154 76 13 chr3 96414599 96414678 -63185105 - MT2A LTR ERVL -449 84 1 9 1320 1186 224 92 14 chr3 96414678 96414957 -63184826 - MTD LTR MaLR -118 301 1 9 1320 340 196 0 0 chr3 96414966 96415022 -63184761 - B1F1 SINE Alu -93 56 1 9 1320 311 196 594 0 chr3 96415085 96415218 -63184565 - B3 SINE B2 -1 215 4 9 1320 336 285 252 0 chr3 96415220 96415343 -63184440 + MIR SINE MIR 98 251 -11 9 1320 664 216 70 25 chr3 96415519 96415659 -63184124 - RCHARR1 DNA MER1_type 0 974 828 9 1320 547 309 88 58 chr3 96415659 96415920 -63183863 + B4 SINE B4 2 270 -22 9 1320 205 295 0 0 chr3 96415932 96415993 -63183790 + (CA)n Simple_repeat Simple_repeat 2 62 0 9 1320 426 200 11 0 chr3 96415995 96416090 -63183693 - RCHARR1 DNA MER1_type -138 836 741 9 1320 646 155 164 0 chr3 96416104 96416220 -63183563 - B1_Mus1 SINE Alu -5 143 9 9 1320 437 104 0 12 chr3 96416281 96416383 -63183400 - B2_Mm2 SINE B2 -12 183 47 9 1320 1155 105 39 39 chr3 96416396 96416575 -63183208 - B2_Mm2 SINE B2 -14 181 3 9 1320 1166 82 0 0 chr3 96416640 96416787 -63182996 - B1_Mus1 SINE Alu 0 148 2 9 1320 851 233 47 0 chr3 96416790 96416983 -63182800 - RCHARR1 DNA MER1_type -221 753 552 9 1320 323 268 53 9 chr3 96416989 96417102 -63182681 + B3 SINE B2 95 212 -4 9 1320 294 336 25 49 chr3 96417171 96417293 -63182490 - RSINE1 SINE B4 -2 163 45 9 1320 234 128 0 0 chr3 96417322 96417361 -63182422 + (TCTA)n Simple_repeat Simple_repeat 4 42 0 9 1320 1260 96 28 11 chr3 96417361 96417541 -63182242 - B2_Mm2 SINE B2 -9 186 4 9 1320 750 212 31 0 chr3 96417621 96417781 -63182002 + B3 SINE B2 52 216 0 9 1320 616 260 305 0 chr3 96417825 96418210 -63181573 - RCHARR1 DNA MER1_type -469 505 4 9 1320 192 152 0 0 chr3 96418227 96418260 -63181523 + GA-rich Low_complexity Low_complexity 1 33 0 9 1320 617 217 97 24 chr3 96418779 96418944 -63180839 - B3 SINE B2 -38 178 2 9 1320 183 80 0 0 chr3 96418944 96418969 -63180814 + (ATG)n Simple_repeat Simple_repeat 2 26 0 9 1320 843 156 7 21 chr3 96418969 96419113 -63180670 - B1_Mur4 SINE Alu -8 142 1 9 1320 445 270 132 44 chr3 96419118 96419300 -63180483 - B3A SINE B2 0 198 1 9 1320 982 200 36 31 chr3 96419310 96419532 -63180251 - ID_B1 SINE B4 0 224 2 9 1320 838 265 7 9 chr3 96419635 96419849 -63179934 + B3A SINE B2 1 208 -8 9 1320 22 35 0 0 chr3 96419891 96419920 -63179863 + AT_rich Low_complexity Low_complexity 1 29 0 9 1320 503 173 192 40 chr3 96420427 96420540 -63179243 - B1_Mur3 SINE Alu -13 136 1 9 1320 280 194 149 96 chr3 96420452 96420556 -63179227 - MT2B LTR ERVL -292 292 156 9 1320 358 326 82 44 chr3 96420692 96420962 -63178821 - B4A SINE B4 -12 280 1 1 1320 335 222 27 100 chr3 96421336 96421446 -63178337 + MT2B2 LTR ERVL 156 257 -327 1 1320 696 156 72 72 chr3 96421358 96421496 -63178287 + B1_Mus1 SINE Alu 10 147 -1 1 1320 380 258 12 47 chr3 96422237 96422477 -63177306 + CT-rich Low_complexity Low_complexity 1 231 0 1 1320 771 219 69 10 chr3 96422725 96422928 -63176855 - B3 SINE B2 0 216 2 1 1320 854 168 21 0 chr3 96423188 96423331 -63176452 + B1_Mus1 SINE Alu 1 146 -2 1 1320 3301 47 0 5 chr3 96423331 96423735 -63176048 - L1Md_F2 LINE L1 0 6582 6181 1 1320 231 141 0 86 chr3 96423738 96423789 -63175994 + A-rich Low_complexity Low_complexity 2 49 0 1 1320 1199 132 5 5 chr3 96423789 96423979 -63175804 + B2_Mm2 SINE B2 5 194 -1 1 1320 231 141 0 86 chr3 96423979 96423997 -63175786 + A-rich Low_complexity Low_complexity 50 65 0 1 1320 312 137 0 0 chr3 96423997 96424048 -63175735 + (GGGA)n Simple_repeat Simple_repeat 3 53 0 1 1320 203 133 0 0 chr3 96424090 96424120 -63175663 + (TTTG)n Simple_repeat Simple_repeat 1 30 0 1 1320 1122 95 0 13 chr3 96424121 96424270 -63175513 - B1_Mus1 SINE Alu -1 147 1 1 1320 552 244 93 88 chr3 96424325 96424367 -63175416 + B3A SINE B2 1 42 -156 1 1320 1202 120 33 0 chr3 96424367 96424551 -63175232 - B2_Mm2 SINE B2 -5 190 1 1 1320 552 244 93 88 chr3 96424551 96424701 -63175082 + B3A SINE B2 43 194 -4 1 1320 512 75 0 41 chr3 96424713 96424810 -63174973 + L1Md_F2 LINE L1 6488 6580 -2 1 1320 464 251 259 62 chr3 96424890 96425133 -63174650 + B4 SINE B4 2 292 0 1 1320 1606 216 209 11 chr3 96425596 96426040 -63173743 - MT2A LTR ERVL 0 533 2 1 1320 617 140 25 50 chr3 96426261 96426381 -63173402 - B1_Mus1 SINE Alu 0 148 32 1 1320 597 167 180 16 chr3 96426474 96426602 -63173181 + B1_Mur1 SINE Alu 1 149 0 1 1320 385 167 15 0 chr3 96426934 96427000 -63172783 + B1_Mur3 SINE Alu 81 147 -2 1 1320 1153 69 7 0 chr3 96427064 96427208 -63172575 + B1_Mus2 SINE Alu 3 147 0 1 1320 373 333 41 34 chr3 96428138 96428154 -63171629 + ID_B1 SINE B4 69 215 -9 1 1320 630 211 39 15 chr3 96428154 96428284 -63171499 + B1F SINE Alu 8 140 -9 1 1320 225 287 315 0 chr3 96428472 96428580 -63171203 - B1F2 SINE Alu 0 149 8 1 1320 381 233 87 0 chr3 96428767 96428870 -63170913 - ID_B1 SINE B4 -23 201 90 1 1320 458 293 37 33 chr3 96429145 96429305 -63170478 + ID_B1 SINE B4 82 243 -49 1 1320 222 37 0 0 chr3 96429368 96429395 -63170388 + (GGGGA)n Simple_repeat Simple_repeat 5 31 0 1 1320 1088 66 0 0 chr3 96429681 96429817 -63169966 - B1_Mus1 SINE Alu 0 148 13 1 1320 491 286 50 0 chr3 96430105 96430224 -63169559 - ID_B1 SINE B4 -1 223 99 1 1320 7330 131 14 46 chr3 96430225 96431013 -63168770 + MERVL-int LTR ERVL 247 1012 -4473 1 1320 1664 26 11 0 chr3 96431013 96431204 -63168579 - B2_Mm1a SINE B2 0 193 1 1 1320 7330 131 14 46 chr3 96431204 96431251 -63168532 + MERVL-int LTR ERVL 1013 1042 -4443 1 1320 1549 47 11 0 chr3 96431251 96431442 -63168341 + B2_Mm1t SINE B2 1 193 0 1 1320 7330 131 14 46 chr3 96431442 96431830 -63167953 + MERVL-int LTR ERVL 1043 1432 -4053 1 1320 1315 109 81 0 chr3 96431830 96432041 -63167742 - ORR1A2-int LTR MaLR -1735 228 1 1 1320 484 88 0 0 chr3 96432041 96432109 -63167674 - ORR1A2 LTR MaLR 0 327 260 1 1320 1498 72 0 5 chr3 96432109 96432305 -63167478 + B2_Mm2 SINE B2 1 195 0 1 1320 1341 87 27 0 chr3 96432358 96432541 -63167242 + B2_Mm2 SINE B2 2 189 -6 1 1320 993 108 0 7 chr3 96432548 96432697 -63167086 + B1_Mus1 SINE Alu 1 148 0 1 1320 450 263 59 72 chr3 96432715 96432920 -63166863 + MT2B LTR ERVL 1 203 -330 1 1320 1002 32 8 0 chr3 96432922 96433046 -63166737 - B1_Mus1 SINE Alu 0 148 24 1 1320 1103 216 109 38 chr3 96433028 96433321 -63166462 + MT2B LTR ERVL 248 561 -40 1 1320 323 270 69 43 chr3 96433472 96433512 -63166271 - B1_Mur1 SINE Alu 0 149 110 1 1320 546 233 0 24 chr3 96433512 96433635 -63166148 + PB1D9 SINE Alu 1 120 0 1 1320 323 270 69 43 chr3 96433635 96433710 -63166073 - B1_Mur1 SINE Alu -40 109 31 1 1320 764 126 0 8 chr3 96434627 96434747 -63165036 - B1_Mm SINE Alu -2 145 27 1 1320 527 149 197 47 chr3 96435197 96435324 -63164459 - B1_Mm SINE Alu -1 146 1 1 1320 914 130 179 0 chr3 96436189 96436351 -63163432 + B2_Mm2 SINE B2 2 192 -3 1 1320 309 292 9 62 chr3 96436354 96436467 -63163316 + MT2B LTR ERVL 158 264 -337 1 1320 737 169 57 0 chr3 96436378 96436502 -63163281 + B1_Mus1 SINE Alu 18 148 0 1 1320 468 121 210 10 chr3 96436568 96436668 -63163115 - PB1D9 SINE Alu 0 120 1 1 1320 553 271 91 25 chr3 96437173 96437370 -63162413 + ID_B1 SINE B4 1 210 -14 1 1320 1152 96 44 22 chr3 96437527 96437709 -63162074 + B2_Mm1t SINE B2 1 186 -7 1 1320 499 229 38 83 chr3 96437745 96437878 -63161905 + MT2B LTR ERVL 150 276 -325 1 1320 1045 52 0 29 chr3 96437768 96437907 -63161876 + B1_Mm SINE Alu 13 147 0 1 1320 308 143 0 0 chr3 96437956 96438005 -63161778 - B3 SINE B2 -167 49 1 1 1320 434 166 42 65 chr3 96438023 96438121 -63161662 - B1_Mur4 SINE Alu -50 97 3 1 1320 815 236 54 29 chr3 96438124 96438329 -63161454 - B3 SINE B2 -5 211 2 1 1320 204 160 0 0 chr3 96438444 96438467 -63161316 + T-rich Low_complexity Low_complexity 28 50 0 1 1320 1118 96 7 0 chr3 96438467 96438613 -63161170 - B1_Mus2 SINE Alu 0 147 1 1 1320 204 160 0 0 chr3 96438613 96438639 -63161144 + T-rich Low_complexity Low_complexity 2 27 0 1 1320 344 219 146 0 chr3 96438654 96438736 -63161047 - B3 SINE B2 -16 200 107 1 1320 1582 263 133 6 chr3 96438749 96439227 -63160556 - Lx5 LINE L1 -77 6973 6456 1 1320 21 0 0 0 chr3 96439760 96439781 -63160002 + GC_rich Low_complexity Low_complexity 1 21 0 1 1320 1081 162 63 0 chr3 96440338 96440529 -63159254 - B3 SINE B2 -12 204 2 1 1320 1044 197 65 5 chr3 96441341 96441540 -63158243 - B3 SINE B2 -5 211 1 1 1320 340 277 36 138 chr3 96441578 96441716 -63158067 - RSINE1 SINE B4 -31 134 11 1 1320 436 309 211 0 chr3 96441799 96442039 -63157744 + MER2 DNA MER2_type 6 295 -50 1 1320 492 262 19 9 chr3 96442187 96442295 -63157488 - RSINE1 SINE B4 -47 118 10 1 1320 422 250 8 57 chr3 96442318 96442441 -63157342 - PB1D10 SINE Alu 0 117 1 1 1320 1024 255 33 75 chr3 96442461 96442766 -63157017 + B4 SINE B4 1 292 0 1 1320 370 280 49 20 chr3 96442806 96442908 -63156875 - PB1 SINE Alu -11 116 12 1 1320 1238 154 59 13 chr3 96443053 96443289 -63156494 - ORR1B1 LTR MaLR 0 394 148 1 1320 736 150 41 41 chr3 96443286 96443432 -63156351 + B3 SINE B2 67 212 -4 1 1320 352 298 21 21 chr3 96443483 96443579 -63156204 + B4 SINE B4 191 286 -6 1 1320 274 261 15 0 chr3 96443604 96443669 -63156114 + (CA)n Simple_repeat Simple_repeat 2 67 0 1 1320 1258 47 0 0 chr3 96443771 96443919 -63155864 + B1_Mus1 SINE Alu 1 148 0 1 1320 611 269 124 62 chr3 96444068 96444341 -63155442 + B4A SINE B4 3 292 0 1 1320 326 307 19 56 chr3 96444375 96444482 -63155301 + PB1D10 SINE Alu 13 115 -2 1 1320 750 223 7 7 chr3 96444509 96444649 -63155134 + B1_Mur1 SINE Alu 3 142 -7 1 1320 1300 90 10 26 chr3 96444682 96444875 -63154908 + B2_Mm2 SINE B2 1 190 -5 1 1320 261 216 0 0 chr3 96444997 96445048 -63154735 - ID_B1 SINE B4 0 224 174 1 1320 256 189 57 0 chr3 96445003 96445056 -63154727 - PB1D10 SINE Alu -6 111 56 1 1320 239 103 42 42 chr3 96445120 96445191 -63154592 + (TCTCTG)n Simple_repeat Simple_repeat 5 75 0 1 1320 589 190 83 0 chr3 96445191 96445312 -63154471 - B1_Mus2 SINE Alu 0 147 17 1 1320 288 0 0 0 chr3 96445365 96445397 -63154386 + (TG)n Simple_repeat Simple_repeat 2 33 0 1 1320 459 307 166 12 chr3 96445428 96445669 -63154114 - B4A SINE B4 -10 282 5 1 1320 528 263 97 118 chr3 96445831 96445921 -63153862 - L1MA9 LINE L1 -37 6275 6197 1 1320 793 206 156 11 chr3 96445921 96446107 -63153676 + B3 SINE B2 1 213 -3 1 1320 528 263 97 118 chr3 96446107 96446438 -63153345 - L1MA9 LINE L1 -116 6196 5863 1 1320 257 254 14 43 chr3 96446459 96446529 -63153254 - tRNA-Ala-GCY_ tRNA tRNA -7 68 1 1 1320 917 144 96 0 chr3 96446547 96446714 -63153069 - B2_Mm2 SINE B2 -11 184 2 1 1320 1072 133 6 6 chr3 96446756 96446915 -63152868 + B2_Mm1t SINE B2 2 160 -33 1 1320 387 0 0 0 chr3 96446915 96446958 -63152825 + (TAAA)n Simple_repeat Simple_repeat 3 45 0 1 1320 379 119 164 32 chr3 96447048 96447155 -63152628 + B2_Mm2 SINE B2 47 183 -10 1 1320 566 259 131 14 chr3 96447213 96447358 -63152425 - RSINE1 SINE B4 -2 163 2 1 1320 223 319 176 0 chr3 96448706 96448797 -63150986 - PB1 SINE Alu -20 107 1 1 1320 638 171 187 0 chr3 96451697 96451820 -63147963 + B1_Mus1 SINE Alu 3 148 0 1 1320 376 276 27 54 chr3 96452499 96452610 -63147173 - PB1D10 SINE Alu -8 109 2 1 1320 806 202 38 109 chr3 96453154 96453365 -63146418 + RMER30 DNA MER1_type 6 201 -1 1 1320 204 259 37 0 chr3 96454234 96454288 -63145495 + (CATG)n Simple_repeat Simple_repeat 2 57 0 1 1320 467 33 0 16 chr3 96454517 96454579 -63145204 + (TG)n Simple_repeat Simple_repeat 1 61 0 1 1320 723 289 48 83 chr3 96454602 96454892 -63144891 - B4 SINE B4 -11 281 2 1 1320 261 0 0 0 chr3 96456192 96456221 -63143562 + (CCCCCA)n Simple_repeat Simple_repeat 2 30 0 1 1320 561 198 133 16 chr3 96456910 96457038 -63142745 + B1_Mur1 SINE Alu 7 149 0 1 1320 591 155 0 0 chr3 96457051 96457154 -63142629 + A-rich Low_complexity Low_complexity 3 105 0 1 1320 1400 85 26 0 chr3 96457224 96457413 -63142370 - B2_Mm2 SINE B2 0 195 2 1 1320 1647 26 0 30 chr3 96457727 96457926 -63141857 + B2_Mm1a SINE B2 1 193 0 1 1320 225 358 37 9 chr3 96457974 96458081 -63141702 + MIRb SINE MIR 119 228 -40 1 1320 996 168 90 20 chr3 96458081 96458136 -63141647 - B3 SINE B2 0 216 163 1 1320 495 0 0 0 chr3 96458136 96458191 -63141592 + (TG)n Simple_repeat Simple_repeat 2 56 0 1 1320 996 168 90 20 chr3 96458191 96458335 -63141448 - B3 SINE B2 -54 162 3 1 1320 351 0 0 0 chr3 96458413 96458452 -63141331 + (TCTA)n Simple_repeat Simple_repeat 1 39 0 1 1320 388 301 62 68 chr3 96459104 96459339 -63140444 + MIRb SINE MIR 2 237 -31 1 1320 628 231 44 15 chr3 96459875 96460011 -63139772 - B1_Mur1 SINE Alu 0 149 10 1 1320 272 312 15 67 chr3 96459912 96460046 -63139737 - MT2B LTR ERVL -337 264 138 1 1320 893 185 0 20 chr3 96462361 96462510 -63137273 - B1_Mur2 SINE Alu 0 149 4 1 1320 272 337 19 19 chr3 96462514 96462620 -63137163 + MIRb SINE MIR 131 236 -32 1 1320 2091 120 6 28 chr3 96462651 96462977 -63136806 - ORR1A2 LTR MaLR -8 319 1 1 1320 478 234 51 93 chr3 96463041 96463159 -63136624 + B1_Mur1 SINE Alu 1 113 -36 1 1320 402 108 0 0 chr3 96463172 96463237 -63136546 + (CA)n Simple_repeat Simple_repeat 1 65 0 1 1320 32 0 0 0 chr3 96463729 96463761 -63136022 + AT_rich Low_complexity Low_complexity 1 32 0 1 1320 643 268 72 52 chr3 96463766 96463959 -63135824 - B3A SINE B2 0 198 2 1 1320 385 278 199 32 chr3 96464098 96464254 -63135529 + B4 SINE B4 1 182 -110 1 1320 231 178 21 43 chr3 96464281 96464328 -63135455 + B1_Mus1 SINE Alu 36 81 -67 1 1320 307 301 50 93 chr3 96464288 96464449 -63135334 + B4 SINE B4 128 281 -11 1 1320 462 36 0 0 chr3 96464451 96464507 -63135276 + (CA)n Simple_repeat Simple_repeat 2 57 0 1 1320 305 326 10 10 chr3 96464524 96464623 -63135160 - L2c LINE L2 -44 3343 3245 1 1320 358 138 0 36 chr3 96465207 96465290 -63134493 + CT-rich Low_complexity Low_complexity 1 80 0 1 1320 796 194 153 51 chr3 96465291 96465580 -63134203 - RLTR12B LTR ERVK -253 315 11 1 1320 545 221 61 17 chr3 96465987 96466102 -63133681 - B3 SINE B2 -95 121 2 1 1320 280 267 12 74 chr3 96466268 96466328 -63133455 + B4A SINE B4 29 83 -209 1 1320 379 304 26 17 chr3 96466328 96466445 -63133338 + PB1D7 SINE Alu 2 119 -1 1 1320 183 42 0 0 chr3 96467333 96467357 -63132426 + (C)n Simple_repeat Simple_repeat 1 24 0 1 1320 1849 214 86 114 chr3 96468500 96468833 -63130950 + RMER6C LTR ERVK 10 370 -320 1 1320 243 79 0 0 chr3 96468833 96468871 -63130912 + (TTGG)n Simple_repeat Simple_repeat 2 39 0 1 20 1209 56 0 0 chr3 96468871 96469013 -63130770 - B1_Mus1 SINE Alu -5 143 2 1 1321 1849 214 86 114 chr3 96469013 96469192 -63130591 + RMER6C LTR ERVK 371 534 -156 1 1321 1291 34 0 0 chr3 96469192 96469339 -63130444 + B1_Mus2 SINE Alu 1 147 0 1 1321 1849 214 86 114 chr3 96469339 96469525 -63130258 + RMER6C LTR ERVK 535 689 -1 1 1321 208 345 43 22 chr3 96469618 96469710 -63130073 + MIRb SINE MIR 37 130 -146 1 1321 201 74 0 0 chr3 96469732 96469759 -63130024 + (TGG)n Simple_repeat Simple_repeat 1 27 0 1 1321 825 142 8 0 chr3 96469759 96469875 -63129908 + B1_Mus1 SINE Alu 20 136 -12 1 1321 1681 36 0 0 chr3 96469875 96470068 -63129715 + B2_Mm1a SINE B2 1 193 0 1 1321 387 0 0 0 chr3 96470103 96470146 -63129637 + (TAGA)n Simple_repeat Simple_repeat 2 44 0 1 1321 279 0 0 0 chr3 96470195 96470226 -63129557 + (ATAGG)n Simple_repeat Simple_repeat 4 34 0 1 1321 770 256 17 28 chr3 96471245 96471426 -63128357 - ID_B1 SINE B4 -4 220 42 1 1321 711 228 68 6 chr3 96471437 96471600 -63128183 - B3A SINE B2 -25 173 1 1 1321 257 0 30 0 chr3 96471611 96471644 -63128139 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 1 1321 960 78 70 0 chr3 96471644 96471773 -63128010 - B1_Mus1 SINE Alu -9 139 2 1 1321 398 248 39 133 chr3 96471814 96471995 -63127788 + RSINE1 SINE B4 2 165 0 1 1321 205 312 51 88 chr3 96472304 96472441 -63127342 - L2c LINE L2 -3 3384 3253 1 1321 1333 18 145 0 chr3 96472590 96472756 -63127027 + B2_Mm1a SINE B2 1 190 -3 1 1321 826 127 13 90 chr3 96472848 96473004 -63126779 - B1_Mur2 SINE Alu 0 149 6 1 1321 295 252 87 175 chr3 96472877 96473060 -63126723 - MT2B LTR ERVL -323 278 112 1 1321 1127 88 0 0 chr3 96473062 96473210 -63126573 + B1_Mus1 SINE Alu 1 148 0 1 1321 210 143 0 0 chr3 96473210 96473245 -63126538 + (A)n Simple_repeat Simple_repeat 1 35 0 1 1321 408 264 73 24 chr3 96473285 96473409 -63126374 + RSINE1 SINE B4 31 160 -5 1 1321 208 0 30 30 chr3 96475955 96475988 -63123795 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 1 1321 931 137 7 0 chr3 96475996 96476142 -63123641 - B1_Mus1 SINE Alu -1 147 1 1 1321 377 190 138 12 chr3 96476161 96476241 -63123542 - 5S rRNA rRNA -31 90 1 1 1321 1316 82 44 0 chr3 96476481 96476504 -63123279 - B2_Mm1a SINE B2 -1 192 162 1 1321 387 0 0 0 chr3 96476504 96476547 -63123236 + (TTTA)n Simple_repeat Simple_repeat 3 45 0 1 1321 1316 82 44 0 chr3 96476547 96476705 -63123078 - B2_Mm1a SINE B2 -32 161 4 1 1321 937 214 64 10 chr3 96477000 96477203 -63122580 + ID_B1 SINE B4 2 215 -9 1 1321 459 0 0 0 chr3 96477203 96477254 -63122529 + (TAA)n Simple_repeat Simple_repeat 2 52 0 1 1321 423 0 0 0 chr3 96477942 96477989 -63121794 + (CATA)n Simple_repeat Simple_repeat 2 48 0 1 1321 221 222 0 0 chr3 96478282 96478327 -63121456 + B1F2 SINE Alu 1 45 -104 1 1321 1125 95 0 0 chr3 96478804 96478952 -63120831 - B1_Mus1 SINE Alu 0 148 1 1 1321 372 309 98 6 chr3 96479309 96479472 -63120311 - MIRb SINE MIR -36 232 55 1 1321 25 0 0 0 chr3 96480327 96480352 -63119431 + AT_rich Low_complexity Low_complexity 1 25 0 1 1321 740 148 327 0 chr3 96480363 96480525 -63119258 + B3 SINE B2 2 216 0 1 1321 818 207 57 0 chr3 96480547 96480687 -63119096 + B1_Mur1 SINE Alu 2 149 0 1 1321 320 269 85 11 chr3 96480795 96480889 -63118894 + B1F SINE Alu 46 146 -3 1 1321 1177 64 0 0 chr3 96480909 96481050 -63118733 - B1_Mus2 SINE Alu -6 141 1 1 1321 904 110 6 88 chr3 96481077 96481102 -63118681 + B1_Mus1 SINE Alu 1 23 -125 1 1321 1374 99 5 0 chr3 96481102 96481293 -63118490 - B2_Mm1a SINE B2 0 193 2 1 1321 904 110 6 88 chr3 96481293 96481427 -63118356 + B1_Mus1 SINE Alu 24 147 -1 1 1321 219 246 0 14 chr3 96481428 96481498 -63118285 + A-rich Low_complexity Low_complexity 4 72 0 1 1321 364 283 67 50 chr3 96481638 96481757 -63118026 - ID_B1 SINE B4 -17 207 87 1 1321 288 284 109 73 chr3 96482848 96482939 -63116844 + PB1D10 SINE Alu 4 106 -11 1 1321 234 91 0 0 chr3 96482939 96482972 -63116811 + (CAAG)n Simple_repeat Simple_repeat 2 34 0 1 1321 288 284 109 73 chr3 96482972 96482990 -63116793 + PB1D10 SINE Alu 107 117 0 1 1321 694 246 0 0 chr3 96483936 96484062 -63115721 + RSINE1 SINE B4 2 127 -38 1 1321 248 313 159 24 chr3 96484062 96484106 -63115677 + B3A SINE B2 1 193 -5 1 1321 221 111 0 77 chr3 96485282 96485321 -63114462 - B2_Mm2 SINE B2 -114 81 46 1 1321 1186 126 29 0 chr3 96485343 96485517 -63114266 - B2_Mm1a SINE B2 -14 179 1 1 1321 331 222 0 31 chr3 96485569 96485634 -63114149 + PB1 SINE Alu 1 63 -64 1 1321 288 111 0 0 chr3 96485652 96485697 -63114086 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 1321 559 115 80 181 chr3 96486394 96486478 -63113305 - B1_Mm SINE Alu 0 147 73 1 1321 1153 49 20 14 chr3 96486478 96486624 -63113159 - B1_Mus2 SINE Alu 0 147 1 1 1321 559 115 80 181 chr3 96486624 96486677 -63113106 - B1_Mm SINE Alu -75 72 24 1 1321 195 100 0 0 chr3 96487165 96487195 -63112588 + (GGA)n Simple_repeat Simple_repeat 2 31 0 1 1321 344 265 51 0 chr3 96489601 96489699 -63110084 + ID_B1 SINE B4 114 216 -8 1 1321 339 233 0 27 chr3 96490101 96490176 -63109607 + ID4_ SINE ID 3 75 -8 1 1321 1549 37 16 0 chr3 96490207 96490394 -63109389 + B2_Mm1a SINE B2 2 191 -2 1 1321 1161 83 0 0 chr3 96490451 96490596 -63109187 - B1_Mus2 SINE Alu -2 145 1 1 1321 365 221 147 0 chr3 96490606 96490701 -63109082 - PB1D9 SINE Alu -8 112 4 1 1321 180 0 0 0 chr3 96490731 96490751 -63109032 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 1 1321 913 150 21 7 chr3 96490764 96490905 -63108878 - B1_Mur4 SINE Alu -7 143 1 1 1321 723 167 111 200 chr3 96490941 96491166 -63108617 + B3 SINE B2 2 206 -10 1 1321 609 83 0 0 chr3 96491170 96491254 -63108529 + (TAAA)n Simple_repeat Simple_repeat 1 84 0 1 1321 264 306 129 0 chr3 96491264 96491349 -63108434 + ID_B1 SINE B4 123 218 -6 1 1321 691 182 132 0 chr3 96491385 96491506 -63108277 + B1_Mur3 SINE Alu 1 137 -12 1 1321 213 266 31 15 chr3 96491550 96491615 -63108168 + ID4 SINE ID 10 75 -8 1 1321 468 0 0 0 chr3 96491622 96491674 -63108109 + (GAAA)n Simple_repeat Simple_repeat 4 55 0 1 1321 922 246 0 45 chr3 96491690 96491911 -63107872 + B3 SINE B2 1 211 -5 1 1321 398 246 120 26 chr3 96491939 96492056 -63107727 + B4 SINE B4 70 197 -95 1 1321 774 175 22 14 chr3 96491957 96492096 -63107687 + B1_Mur1 SINE Alu 10 149 0 1 1321 205 182 0 0 chr3 96492097 96492141 -63107642 + A-rich Low_complexity Low_complexity 6 49 0 1 1321 293 337 51 97 chr3 96492164 96492219 -63107564 + MIRb SINE MIR 40 102 -166 1 1321 687 201 20 34 chr3 96492219 96492368 -63107415 - B1_Mur2 SINE Alu 0 149 3 1 1321 293 337 51 97 chr3 96492368 96492529 -63107254 + MIRb SINE MIR 103 246 -22 1 1321 189 370 27 0 chr3 96493804 96493877 -63105906 - MIRb SINE MIR -82 186 112 1 1321 189 0 0 0 chr3 96494306 96494327 -63105456 + (TTTTTG)n Simple_repeat Simple_repeat 4 24 0 1 1321 1173 82 0 0 chr3 96495001 96495148 -63104635 - B1_Mus1 SINE Alu 0 148 2 1 1321 1466 75 0 5 chr3 96495153 96495342 -63104441 - B2_Mm2 SINE B2 -6 189 2 1 1321 502 242 56 16 chr3 96495382 96495508 -63104275 + ID_B1 SINE B4 81 211 -13 1 1321 339 25 0 0 chr3 96495510 96495550 -63104233 + (CAAA)n Simple_repeat Simple_repeat 2 41 0 1 1321 643 92 0 33 chr3 96495786 96495889 -63103894 - B1_Mur4 SINE Alu -1 149 27 1 1321 276 326 52 39 chr3 96495966 96496119 -63103664 + RSINE1 SINE B4 3 157 -8 1 1321 22 0 0 0 chr3 96496159 96496181 -63103602 + AT_rich Low_complexity Low_complexity 1 22 0 1 1321 491 254 111 0 chr3 96497281 96497407 -63102376 - B3A SINE B2 -32 166 27 1 1321 426 248 174 0 chr3 96497424 96497533 -63102250 - RSINE1 SINE B4 -35 130 3 1 1321 624 215 104 0 chr3 96497576 96497711 -63102072 - B1_Mur2 SINE Alu 0 149 1 1 1321 306 261 41 116 chr3 96497711 96497747 -63102036 - MT2B LTR ERVL -448 153 129 1 1321 264 182 0 0 chr3 96497711 96497755 -63102028 - ID_B1 SINE B4 -67 157 114 1 1321 665 203 119 8 chr3 96497769 96497903 -63101880 - B1_Mur2 SINE Alu 0 149 1 1 1321 389 287 96 0 chr3 96497918 96498054 -63101729 - B1F1 SINE Alu 0 149 1 1 1321 23 33 0 0 chr3 96498065 96498095 -63101688 + AT_rich Low_complexity Low_complexity 1 30 0 1 1321 1311 194 41 44 chr3 96498266 96498585 -63101198 + RCHARR1 DNA MER1_type 222 539 -435 1 1321 580 178 63 82 chr3 96498607 96498702 -63101081 + RCHARR1 DNA MER1_type 786 886 -88 1 1321 1004 147 35 66 chr3 96498702 96498899 -63100884 - B2_Mm2 SINE B2 -4 191 1 1 1321 580 178 63 82 chr3 96498899 96498962 -63100821 + RCHARR1 DNA MER1_type 887 941 -33 1 1321 1185 58 0 0 chr3 96499634 96499773 -63100010 + B1_Mus1 SINE Alu 1 139 -9 1 1321 249 83 0 0 chr3 96499773 96499809 -63099974 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 1 1321 219 212 37 24 chr3 96500921 96501003 -63098780 + (CGGGG)n Simple_repeat Simple_repeat 2 84 0 1 1321 22 0 0 0 chr3 96501278 96501300 -63098483 + GC_rich Low_complexity Low_complexity 1 22 0 2 1321 1582 110 219 114 chr3 96502223 96502512 -63097271 + RMER10B LTR ERVL 1 335 -63 3 1321 1211 48 0 7 chr3 96502512 96502659 -63097124 - B1_Mus2 SINE Alu 0 147 2 4 1321 1582 110 219 114 chr3 96502659 96502729 -63097054 + RMER10B LTR ERVL 336 398 0 3 1321 291 54 0 0 chr3 96502854 96502891 -63096892 + (ATG)n Simple_repeat Simple_repeat 1 37 0 5 1321 226 220 120 0 chr3 96504569 96504619 -63095164 + L2a LINE L2 3367 3422 -4 6 1321 341 319 145 10 chr3 96504656 96504849 -63094934 + Lx8 LINE L1 7255 7473 0 7 1321 231 307 246 4 chr3 96506555 96506697 -63093086 - MIRb SINE MIR -28 234 64 8 1321 369 109 0 0 chr3 96507002 96507057 -63092726 + (T)n Simple_repeat Simple_repeat 1 55 0 9 1321 1086 31 0 0 chr3 96507063 96507191 -63092592 - B1_Mus1 SINE Alu 0 148 21 1 1321 430 117 142 113 chr3 96507098 96507204 -63092579 - MT2B LTR ERVL -337 264 156 1 1321 322 209 75 0 chr3 96507234 96507301 -63092482 - ID4 SINE ID -8 75 4 1 1321 315 295 52 35 chr3 96510011 96510127 -63089656 - RSINE1 SINE B4 -4 161 44 1 1321 279 327 133 18 chr3 96510478 96510643 -63089140 - MIRb SINE MIR -34 234 51 1 1321 681 13 0 0 chr3 96512827 96512905 -63086878 + (TCTA)n Simple_repeat Simple_repeat 1 78 0 1 1321 340 289 32 43 chr3 96512907 96513001 -63086782 - ID_B1 SINE B4 -11 213 121 1 1321 291 205 190 13 chr3 96513172 96513251 -63086532 - RSINE1 SINE B4 -23 142 50 1 1321 2981 169 79 19 chr3 96513253 96513832 -63085951 + Lx7 LINE L1 6629 7242 -454 1 1321 424 304 20 20 chr3 96513839 96513987 -63085796 + B1_Mur1 SINE Alu 2 149 0 1 1321 462 191 73 22 chr3 96514154 96514269 -63085514 + ORR1D2 LTR MaLR 9 134 -236 2 1321 2445 94 122 2 chr3 96514300 96514700 -63085083 + RMER16 LTR ERVK 1 533 0 2 1321 341 205 103 0 chr3 96514700 96514775 -63085008 + ORR1D2 LTR MaLR 280 362 -8 2 1321 348 287 96 0 chr3 96514807 96514943 -63084840 - B1F1 SINE Alu 0 149 1 2 1321 371 276 39 48 chr3 96515046 96515067 -63084716 - B4A SINE B4 -47 245 227 2 1321 471 273 95 34 chr3 96515067 96515215 -63084568 - RSINE1 SINE B4 -8 157 1 2 1321 371 296 56 36 chr3 96515215 96515333 -63084450 - B4A SINE B4 -65 227 100 2 1321 928 68 104 22 chr3 96515579 96515714 -63084069 + B1_Mus2 SINE Alu 1 146 -1 2 1321 240 59 0 0 chr3 96515749 96515783 -63084000 + (TCC)n Simple_repeat Simple_repeat 2 35 0 2 1321 345 194 28 0 chr3 96515819 96515891 -63083892 + ID4 SINE ID 3 76 -7 2 1321 400 248 390 0 chr3 96516230 96516440 -63083343 + L1M4 LINE L1 3967 4258 -1888 2 1321 241 271 67 108 chr3 96516592 96516712 -63083071 + PB1D10 SINE Alu 1 115 -2 2 1321 309 198 42 26 chr3 96516831 96516916 -63082867 + B4A SINE B4 1 82 -83 3 1321 321 26 0 0 chr3 96516938 96516976 -63082807 + (CA)n Simple_repeat Simple_repeat 2 39 0 3 1321 336 169 253 0 chr3 96517173 96517256 -63082527 - PB1D9 SINE Alu -8 112 9 3 1321 237 65 0 0 chr3 96519766 96519797 -63079986 + (T)n Simple_repeat Simple_repeat 1 31 0 3 1321 456 259 18 9 chr3 96519802 96519911 -63079872 - PB1D10 SINE Alu -1 116 7 3 1321 363 236 57 63 chr3 96520123 96520152 -63079631 - YREP_Mm Unknown Unknown -1476 336 182 3 1321 649 176 31 16 chr3 96520152 96520279 -63079504 + ID_B1 SINE B4 92 220 -4 3 1321 1217 89 71 0 chr3 96520789 96520957 -63078826 + B2_Mm2 SINE B2 2 181 -14 3 1321 1156 69 7 0 chr3 96520962 96521107 -63078676 - B1_Mm SINE Alu 0 147 2 3 1321 21 36 0 0 chr3 96521108 96521136 -63078647 + AT_rich Low_complexity Low_complexity 1 28 0 3 1321 303 47 0 0 chr3 96521136 96521179 -63078604 + B1_Mus2 SINE Alu 105 147 0 4 1321 204 40 0 0 chr3 96521179 96521204 -63078579 + (A)n Simple_repeat Simple_repeat 1 25 0 4 1321 375 236 155 65 chr3 96521230 96521250 -63078533 + B4 SINE B4 79 151 -141 4 1321 611 190 91 0 chr3 96521250 96521371 -63078412 + B1_Mur2 SINE Alu 17 148 -1 4 1321 375 236 155 65 chr3 96521371 96521398 -63078385 + B4 SINE B4 152 261 -31 4 1321 246 299 14 56 chr3 96521423 96521494 -63078289 + PB1D10 SINE Alu 1 68 -49 4 1321 323 133 413 22 chr3 96521624 96521716 -63078067 + B1_Mur3 SINE Alu 21 148 -1 4 1321 1083 68 0 15 chr3 96521807 96521942 -63077841 + B1_Mus1 SINE Alu 2 134 -14 4 1321 284 0 37 56 chr3 96521942 96521996 -63077787 + (CAAAA)n Simple_repeat Simple_repeat 3 55 0 4 1321 226 252 118 138 chr3 96522066 96522081 -63077702 - B1F SINE Alu 0 149 137 4 1321 1211 27 0 27 chr3 96522081 96522231 -63077552 - B1_Mus2 SINE Alu 0 147 2 4 1321 293 251 119 74 chr3 96522231 96522367 -63077416 - PB1 SINE Alu -13 136 1 4 1321 816 212 14 0 chr3 96522470 96522616 -63077167 - B1_Mur3 SINE Alu -1 148 1 5 1321 1007 214 44 0 chr3 96522629 96522835 -63076948 - B3 SINE B2 -1 215 1 5 1321 246 21 137 59 chr3 96523070 96523121 -63076662 + B1_Mur4 SINE Alu 94 148 -2 5 1321 226 337 75 11 chr3 96524104 96524197 -63075586 + L2 LINE L2 1998 2096 -1323 5 1321 750 153 92 0 chr3 96524273 96524404 -63075379 - B1_Mur2 SINE Alu -2 147 5 5 1321 357 222 317 30 chr3 96524415 96524582 -63075201 - B3 SINE B2 0 216 2 5 1321 522 296 128 17 chr3 96524591 96524763 -63075020 - B3A SINE B2 0 198 8 5 1321 423 193 60 0 chr3 96524787 96524870 -63074913 - B4 SINE B4 -69 223 136 5 1321 567 297 8 48 chr3 96524946 96525097 -63074686 - ID_B1 SINE B4 0 224 86 5 1321 246 267 63 84 chr3 96524988 96525131 -63074652 + YREP_Mm Unknown Unknown 211 350 -1462 5 1321 464 284 7 47 chr3 96525196 96525344 -63074439 + B4A SINE B4 1 142 -150 6 1321 463 301 59 15 chr3 96525353 96525488 -63074295 - ID_B1 SINE B4 0 224 84 6 1321 671 216 57 14 chr3 96525488 96525629 -63074154 - B1_Mur2 SINE Alu -1 148 2 6 1321 313 171 28 28 chr3 96525648 96525720 -63074063 - ID4_ SINE ID -9 74 3 6 1321 891 142 0 98 chr3 96525755 96525822 -63073961 - B1_Mur1 SINE Alu 0 149 95 6 1321 1431 142 23 0 chr3 96525822 96526041 -63073742 - URR1B DNA MER1_type -1 224 1 6 1321 891 142 0 98 chr3 96526041 96526137 -63073646 - B1_Mur1 SINE Alu -55 94 2 6 1321 923 101 8 0 chr3 96527119 96527248 -63072535 - B3 SINE B2 -86 130 1 6 1321 192 281 0 118 chr3 96527284 96527377 -63072406 + L2c LINE L2 3301 3382 -5 6 1321 189 0 0 0 chr3 96528416 96528437 -63071346 + (T)n Simple_repeat Simple_repeat 1 21 0 6 1321 1235 41 0 13 chr3 96528437 96528586 -63071197 - B1_Mus2 SINE Alu 0 147 1 6 1321 576 280 80 6 chr3 96528616 96528792 -63070991 - ID_B1 SINE B4 -1 223 35 7 1321 2211 154 78 97 chr3 96528793 96529219 -63070564 - RMER4A LTR ERVK 0 466 48 7 1321 1278 27 0 0 chr3 96529219 96529365 -63070418 - B1_Mus2 SINE Alu -1 146 1 7 1321 2211 154 78 97 chr3 96529365 96529413 -63070370 - RMER4A LTR ERVK -419 47 1 7 1321 489 297 30 23 chr3 96530239 96530370 -63069413 + B1F SINE Alu 2 133 -16 7 1321 640 230 79 29 chr3 96530435 96530574 -63069209 + ID_B1 SINE B4 79 224 0 7 1321 474 262 135 0 chr3 96530674 96530800 -63068983 + B1F SINE Alu 6 148 -1 7 1321 767 201 0 26 chr3 96532815 96532968 -63066815 - B1_Mur2 SINE Alu 0 149 1 7 1321 234 0 0 0 chr3 96533568 96533594 -63066189 + (T)n Simple_repeat Simple_repeat 1 26 0 7 1321 384 274 24 0 chr3 96533819 96533903 -63065880 - PB1D10 SINE Alu -27 90 5 7 1321 272 158 99 59 chr3 96534128 96534229 -63065554 - L1MA8 LINE L1 -31 6260 6156 7 1321 475 277 50 21 chr3 96534249 96534389 -63065394 - RSINE1 SINE B4 0 165 22 8 1321 723 194 35 14 chr3 96534525 96534666 -63065117 - B1_Mur3 SINE Alu -5 144 1 8 1321 692 214 14 28 chr3 96534670 96534814 -63064969 - B1F2 SINE Alu -6 143 2 8 1321 269 254 14 95 chr3 96535395 96535415 -63064368 - ID SINE ID -140 84 17 8 1321 285 259 0 0 chr3 96535415 96535469 -63064314 - ID4_ SINE ID -13 70 17 8 1321 263 146 0 18 chr3 96535544 96535600 -63064183 + CT-rich Low_complexity Low_complexity 4 58 0 8 1321 522 148 26 0 chr3 96535608 96535723 -63064060 + GA-rich Low_complexity Low_complexity 1 118 0 8 1321 556 268 91 17 chr3 96535732 96535907 -63063876 - ID_B1 SINE B4 -21 203 16 8 1321 551 133 143 0 chr3 96536426 96536531 -63063252 - B1_Mus2 SINE Alu 0 147 28 8 1321 439 244 75 8 chr3 96536531 96536545 -63063238 - ID_B1 SINE B4 -2 221 95 8 1321 949 135 14 0 chr3 96536579 96536720 -63063063 - B1_Mur2 SINE Alu -6 143 1 9 1321 392 0 21 0 chr3 96536749 96536797 -63062986 + (TG)n Simple_repeat Simple_repeat 2 50 0 9 1321 207 69 0 0 chr3 96537576 96537605 -63062178 + (TTTA)n Simple_repeat Simple_repeat 1 29 0 9 1321 801 233 0 12 chr3 96537626 96537791 -63061992 - RSINE1 SINE B4 0 165 3 9 1321 312 265 198 33 chr3 96537795 96537916 -63061867 - ID_B1 SINE B4 -1 223 83 9 1321 813 282 35 0 chr3 96537955 96538157 -63061626 + ID_B1 SINE B4 1 209 -15 9 1321 383 242 34 124 chr3 96538279 96538515 -63061268 - RSINE1 SINE B4 -3 221 38 9 1321 390 204 59 79 chr3 96538526 96538627 -63061156 - B1F SINE Alu -2 147 49 9 1321 819 179 0 16 chr3 96538916 96539098 -63060685 + CT-rich Low_complexity Low_complexity 2 180 0 9 1321 243 362 14 61 chr3 96539202 96539349 -63060434 + MER20B DNA MER1_type 1 140 -643 9 1321 180 0 0 0 chr3 96539448 96539468 -63060315 + (T)n Simple_repeat Simple_repeat 1 20 0 1 1321 1681 26 0 20 chr3 96539728 96539925 -63059858 - B2_Mm1t SINE B2 0 193 1 1 1321 579 224 82 0 chr3 96541954 96542088 -63057695 - B3 SINE B2 0 216 72 1 1321 780 191 114 6 chr3 96542066 96542224 -63057559 - B3 SINE B2 -41 175 1 1 1321 239 284 122 0 chr3 96542227 96542301 -63057482 - B1F2 SINE Alu -57 92 10 1 1321 763 173 36 7 chr3 96542524 96542664 -63057119 - B1_Mur2 SINE Alu 0 149 6 1 1321 704 161 0 17 chr3 96542755 96542875 -63056908 - B1_Mur4 SINE Alu -5 145 28 1 1321 1225 194 0 0 chr3 96542877 96543078 -63056705 - B3 SINE B2 -14 202 2 1 1321 1268 246 65 133 chr3 96543079 96543409 -63056374 - Lx8 LINE L1 -24 7449 7147 1 1321 926 173 155 11 chr3 96543409 96543590 -63056193 - B3 SINE B2 -9 207 1 1 1321 1268 246 65 133 chr3 96543590 96543785 -63055998 - Lx8 LINE L1 -327 7146 6960 1 1321 345 100 0 0 chr3 96544257 96544307 -63055476 + (TTTC)n Simple_repeat Simple_repeat 1 50 0 1 1321 714 158 155 52 chr3 96544307 96544481 -63055302 - B2_Mm2 SINE B2 -1 194 3 1 1321 741 122 0 0 chr3 96544496 96544611 -63055172 + (TTCC)n Simple_repeat Simple_repeat 2 116 0 1 1321 1114 95 0 0 chr3 96544612 96544759 -63055024 - B1_Mus1 SINE Alu 0 148 2 1 1321 275 319 29 0 chr3 96544946 96545015 -63054768 + ID_B1 SINE B4 82 152 -72 1 1321 247 349 47 0 chr3 96545015 96545032 -63054751 + PB1D10 SINE Alu 1 90 -27 1 1321 388 281 63 76 chr3 96545117 96545188 -63054595 + RSINE1 SINE B4 4 79 -86 1 1321 4526 87 7 12 chr3 96545188 96545792 -63053991 - MT2B LTR ERVL 0 601 1 1 1321 388 281 63 76 chr3 96545792 96545878 -63053905 + RSINE1 SINE B4 80 159 -6 1 1321 907 96 98 49 chr3 96545951 96546115 -63053668 - B2_Mm2 SINE B2 0 195 24 1 1321 267 320 25 62 chr3 96546168 96546248 -63053535 - B4A SINE B4 -134 158 82 1 1321 450 204 0 28 chr3 96546248 96546290 -63053493 + polypyrimidine Low_complexity Low_complexity 97 138 0 1 1321 1206 102 0 0 chr3 96546290 96546466 -63053317 + (TTCCC)n Simple_repeat Simple_repeat 2 177 0 1 1321 450 204 0 28 chr3 96546466 96546564 -63053219 + CT-rich Low_complexity Low_complexity 2 96 0 1 1321 465 257 26 0 chr3 96546977 96547090 -63052693 - PB1D7 SINE Alu 0 120 5 1 1321 23 0 0 0 chr3 96547291 96547314 -63052469 + AT_rich Low_complexity Low_complexity 1 23 0 1 1321 720 229 125 6 chr3 96547316 96547492 -63052291 - B3A SINE B2 0 198 2 1 1321 406 280 20 0 chr3 96548553 96548653 -63051130 - RSINE1 SINE B4 -62 103 2 1 1321 381 242 64 14 chr3 96548653 96548847 -63050936 - L1M4b LINE L1 -693 6323 6075 1 1321 387 0 0 0 chr3 96548855 96548898 -63050885 + (TC)n Simple_repeat Simple_repeat 2 44 0 1 1321 388 292 83 45 chr3 96548937 96549249 -63050534 - L1M2 LINE L1 -845 5298 4975 1 1321 447 83 0 0 chr3 96549281 96549341 -63050442 - B1_Mur4 SINE Alu -90 60 1 1 1321 399 127 0 112 chr3 96549341 96549361 -63050422 - B4 SINE B4 -148 144 74 1 1321 996 266 115 37 chr3 96549361 96549841 -63049942 - L1M4b LINE L1 -940 5797 5248 1 1321 210 37 0 0 chr3 96549841 96549868 -63049915 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 1321 1048 97 0 0 chr3 96549868 96550002 -63049781 - B1_Mus2 SINE Alu -10 137 4 1 1321 831 243 14 51 chr3 96550005 96550222 -63049561 - B3 SINE B2 -7 209 1 1 1321 996 237 63 28 chr3 96550222 96550460 -63049323 - L1M4b LINE L1 -1725 5281 5036 1 1321 1518 207 31 55 chr3 96551080 96551463 -63048320 - ORR1D1 LTR MaLR 0 374 1 1 1321 323 107 308 42 chr3 96551464 96551581 -63048202 - B2_Mm2 SINE B2 -1 194 47 1 1321 1287 92 23 0 chr3 96551613 96551787 -63047996 - B2_Mm2 SINE B2 -14 181 4 1 1321 1677 31 0 0 chr3 96552021 96552213 -63047570 - B2_Mm1a SINE B2 0 193 2 1 1321 5477 178 71 12 chr3 96552215 96553266 -63046517 - Lx5 LINE L1 0 7050 5938 1 1321 186 43 0 0 chr3 96553267 96553290 -63046493 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 1 1321 796 173 237 0 chr3 96553445 96553618 -63046165 + B3 SINE B2 3 216 0 1 1321 1847 134 68 106 chr3 96554439 96554489 -63045294 - ORR1B1 LTR MaLR 0 394 354 1 1321 1440 53 37 21 chr3 96554489 96554680 -63045103 - B2_Mm2 SINE B2 -1 194 1 1 1321 1847 134 68 106 chr3 96554680 96554997 -63044786 - ORR1B1 LTR MaLR -41 353 41 1 1321 1075 117 6 11 chr3 96555027 96555208 -63044575 + (TTTCC)n Simple_repeat Simple_repeat 1 180 0 1 1321 731 226 15 0 chr3 96555209 96555477 -63044306 + CT-rich Low_complexity Low_complexity 1 272 0 1 1321 928 117 7 7 chr3 96555482 96555637 -63044146 + (TTTCC)n Simple_repeat Simple_repeat 3 157 0 1 1321 545 194 43 72 chr3 96555637 96555776 -63044007 - B1_Mur1 SINE Alu -14 135 1 1 1321 300 264 113 65 chr3 96555933 96556119 -63043664 - L1M4b LINE L1 -5082 2252 2058 1 1321 1097 200 108 0 chr3 96556498 96556758 -63043025 + ORR1D1 LTR MaLR 1 288 -86 1 1321 211 298 0 0 chr3 96556837 96556884 -63042899 + B1F SINE Alu 13 59 -90 1 1321 2081 138 13 0 chr3 96556905 96557209 -63042574 - MTC LTR MaLR -113 308 1 1 1321 786 22 0 0 chr3 96557476 96557568 -63042215 + (TCCCC)n Simple_repeat Simple_repeat 2 93 0 1 1321 939 166 14 0 chr3 96557589 96557734 -63042049 - B1_Mus1 SINE Alu 0 148 2 1 1321 22 0 0 0 chr3 96557758 96557780 -63042003 + AT_rich Low_complexity Low_complexity 1 22 0 1 1321 761 284 22 21 chr3 96557780 96557980 -63041803 + B3 SINE B2 1 184 -11 1 1321 670 263 46 7 chr3 96558007 96558160 -63041623 - RSINE1 SINE B4 -2 163 5 1 1321 558 29 0 0 chr3 96558432 96558500 -63041283 + (CA)n Simple_repeat Simple_repeat 2 69 0 1 1321 650 250 0 45 chr3 96559683 96559838 -63039945 - B1_Mur4 SINE Alu 0 150 3 1 1321 294 336 72 7 chr3 96559993 96560131 -63039652 + B1F SINE Alu 1 147 -2 1 1321 324 237 0 17 chr3 96560140 96560200 -63039583 + ID4_ SINE ID 7 65 -18 1 1321 24 77 0 0 chr3 96560286 96560338 -63039445 + AT_rich Low_complexity Low_complexity 1 52 0 1 1321 325 269 0 0 chr3 96560375 96560442 -63039341 + B1F SINE Alu 76 142 -7 1 1321 468 35 0 0 chr3 96560452 96560510 -63039273 + (CCA)n Simple_repeat Simple_repeat 1 58 0 1 1321 22 35 0 0 chr3 96560634 96560663 -63039120 + AT_rich Low_complexity Low_complexity 1 29 0 1 1321 219 173 0 0 chr3 96562507 96562559 -63037224 + CT-rich Low_complexity Low_complexity 1 52 0 1 1321 615 241 30 8 chr3 96562580 96562714 -63037069 - B1F SINE Alu -12 137 1 1 1321 476 336 0 9 chr3 96562865 96562979 -63036804 - PB1 SINE Alu -14 113 1 1 1321 1210 82 0 0 chr3 96562987 96563134 -63036649 - B1_Mus2 SINE Alu 0 147 1 1 1321 542 217 17 9 chr3 96564098 96564214 -63035569 - B1_Mur4 SINE Alu 0 150 34 1 1321 6660 70 30 13 chr3 96564463 96565671 -63034112 - L1VL2 LINE L1 -2239 1376 160 1 1321 843 58 0 0 chr3 96565669 96565772 -63034011 - L1VL2 LINE L1 -5532 803 701 1 1321 2958 92 36 0 chr3 96565771 96566182 -63033601 - Lx2 LINE L1 -365 6632 6207 1 1321 224 0 65 0 chr3 96566259 96566290 -63033493 + (TTTTA)n Simple_repeat Simple_repeat 2 34 0 1 1321 1244 69 0 0 chr3 96566290 96566435 -63033348 - B1_Mus1 SINE Alu -3 145 1 1 1321 21 36 0 0 chr3 96566440 96566468 -63033315 + AT_rich Low_complexity Low_complexity 1 28 0 1 1321 845 180 16 43 chr3 96566491 96566695 -63033088 - B3 SINE B2 0 195 2 1 1321 1902 120 6 27 chr3 96567032 96567366 -63032417 + RLTR11B LTR ERVK 127 453 0 1 1321 186 143 0 0 chr3 96567442 96567477 -63032306 + (CATG)n Simple_repeat Simple_repeat 1 35 0 1 1321 348 222 0 0 chr3 96567748 96567811 -63031972 + B1_Mur4 SINE Alu 2 64 -86 1 1321 549 0 0 0 chr3 96567936 96567997 -63031786 + (TTCC)n Simple_repeat Simple_repeat 4 64 0 1 1321 434 275 0 44 chr3 96567998 96568112 -63031671 - B1_Mur1 SINE Alu -6 143 35 1 1321 276 239 15 175 chr3 96568108 96568245 -63031538 + B3 SINE B2 81 210 -6 1 1321 940 148 15 0 chr3 96568248 96568383 -63031400 + B1_Mur4 SINE Alu 1 137 -13 1 1321 270 0 0 0 chr3 96568388 96568418 -63031365 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 1 1321 344 274 48 64 chr3 96568538 96568663 -63031120 - B1F2 SINE Alu -22 127 5 1 1321 338 250 119 73 chr3 96568663 96568686 -63031097 - ID_B1 SINE B4 -17 204 50 1 1321 438 53 0 0 chr3 96568750 96568807 -63030976 + (TC)n Simple_repeat Simple_repeat 2 58 0 1 1321 779 232 0 0 chr3 96568820 96568958 -63030825 - B1_Mur1 SINE Alu -11 138 1 1 1321 21 0 0 0 chr3 96568958 96568979 -63030804 + AT_rich Low_complexity Low_complexity 1 21 0 1 1321 36 62 0 0 chr3 96569020 96569084 -63030699 + AT_rich Low_complexity Low_complexity 1 64 0 1 1321 1231 61 7 0 chr3 96569084 96569231 -63030552 - B1_Mus1 SINE Alu 0 148 1 1 1321 958 242 248 0 chr3 96569403 96569705 -63030078 - MTE2b LTR MaLR -2 377 1 1 1321 1871 184 30 3 chr3 96569798 96570131 -63029652 + ORR1D1 LTR MaLR 1 342 -32 1 1321 6187 186 80 35 chr3 96570142 96571447 -63028336 + ORR1D1-int LTR MaLR 5 1367 -3 1 1321 1606 151 195 19 chr3 96571450 96571768 -63028015 + ORR1D1 LTR MaLR 1 374 0 1 1321 929 18 0 17 chr3 96571910 96572025 -63027758 + B1_Mus1 SINE Alu 30 142 -6 1 1321 243 0 0 0 chr3 96572027 96572054 -63027729 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 1 1321 1199 74 0 13 chr3 96572099 96572249 -63027534 + B1_Mus1 SINE Alu 1 148 0 1 1321 529 289 64 32 chr3 96572266 96572516 -63027267 + L1M5 LINE L1 3686 3943 -2203 1 1321 394 252 34 3 chr3 96572516 96572611 -63027172 - B4 SINE B4 -151 141 48 1 1321 431 190 78 0 chr3 96572611 96572737 -63027046 - L1M2 LINE L1 -668 5510 5372 1 1321 875 188 163 16 chr3 96572746 96572930 -63026853 - B3 SINE B2 -5 211 1 1 1321 229 234 172 50 chr3 96572960 96573059 -63026724 - B4A SINE B4 -112 180 70 1 1321 607 322 40 6 chr3 96573058 96573233 -63026550 - B4A SINE B4 -58 234 54 2 1321 852 233 6 30 chr3 96573334 96573502 -63026281 - RSINE1 SINE B4 0 165 2 2 1321 998 286 129 12 chr3 96573504 96573992 -63025791 - L1_Mur3 LINE L1 -1588 4292 3748 2 1321 258 105 0 0 chr3 96573992 96574030 -63025753 + (CTG)n Simple_repeat Simple_repeat 3 40 0 2 1321 357 163 0 32 chr3 96574035 96574130 -63025653 + CT-rich Low_complexity Low_complexity 3 94 0 2 1321 811 116 0 80 chr3 96574132 96574282 -63025501 - B1_Mus2 SINE Alu -7 140 3 2 1321 476 252 48 24 chr3 96574284 96574476 -63025307 - L1M2 LINE L1 -2356 3784 3587 2 1321 964 201 150 16 chr3 96574476 96574663 -63025120 - B3 SINE B2 -3 213 2 2 1321 468 273 70 76 chr3 96574663 96574809 -63024974 - L1M2 LINE L1 -2554 3589 3435 2 1321 460 260 30 20 chr3 96574815 96574930 -63024853 - B1F SINE Alu -2 125 3 2 1321 289 222 114 114 chr3 96574930 96574963 -63024820 - MT2B2 LTR ERVL -429 155 123 2 1321 983 311 82 65 chr3 96574966 96575864 -63023919 - L1M2 LINE L1 -2741 3402 2489 2 1321 325 279 66 4 chr3 96575861 96575974 -63023809 - L1MB7 LINE L1 -1 6173 6053 2 1321 844 260 106 17 chr3 96576052 96576287 -63023496 - B4 SINE B4 -2 290 35 2 1321 656 218 105 14 chr3 96576342 96576578 -63023205 - L1MB7 LINE L1 -141 6033 5783 2 1321 244 221 193 0 chr3 96576696 96576836 -63022947 - L1MB7 LINE L1 -432 5752 5586 2 1321 22 0 0 0 chr3 96576922 96576944 -63022839 + AT_rich Low_complexity Low_complexity 1 22 0 2 1321 379 360 161 0 chr3 96576998 96577209 -63022574 - B4 SINE B4 0 292 48 2 1321 231 232 147 0 chr3 96577269 96577364 -63022419 - BLACKJACK DNA AcHobo -641 2303 2195 2 1321 225 143 13 91 chr3 96577807 96577884 -63021899 + GA-rich Low_complexity Low_complexity 1 71 0 2 1321 483 273 45 40 chr3 96578459 96578661 -63021122 - ORR1D2 LTR MaLR 0 370 168 2 1321 655 249 10 106 chr3 96578811 96579018 -63020765 + B3A SINE B2 2 188 -7 2 1321 1236 42 35 0 chr3 96579935 96580078 -63019705 + B1_Mus1 SINE Alu 1 148 0 2 1321 209 87 0 80 chr3 96580079 96580129 -63019654 + A-rich Low_complexity Low_complexity 1 46 0 2 1321 374 219 122 0 chr3 96580206 96580307 -63019476 + PB1D10 SINE Alu 2 115 -5 2 1321 421 318 67 93 chr3 96580253 96580305 -63019478 + B4 SINE B4 44 192 -100 2 1321 570 246 100 0 chr3 96580305 96580435 -63019348 + B1_Mus2 SINE Alu 5 147 0 2 1321 421 318 67 93 chr3 96580435 96580447 -63019336 + B4 SINE B4 193 232 -60 2 1321 889 227 141 31 chr3 96580538 96580793 -63018990 - ORR1D1 LTR MaLR -51 323 41 2 1321 302 207 24 126 chr3 96580910 96581037 -63018746 - PB1D10 SINE Alu 0 117 4 2 1321 461 291 110 0 chr3 96581286 96581413 -63018370 + ID_B1 SINE B4 82 222 -2 2 1321 3068 22 11 0 chr3 96582367 96582732 -63017051 - MTA_Mm LTR MaLR 0 396 28 2 1321 792 241 11 49 chr3 96582720 96582903 -63016880 - ID_B1 SINE B4 -46 178 3 2 1321 456 51 0 0 chr3 96583105 96583164 -63016619 + MT2C_Mm LTR ERVL 1 59 -416 2 1321 5598 97 28 15 chr3 96583176 96583961 -63015822 + MERVL-int LTR ERVL 1688 2482 -3003 2 1321 1243 91 40 0 chr3 96583987 96584162 -63015621 - B2_Mm2 SINE B2 -12 183 2 2 1321 409 196 51 10 chr3 96584188 96584286 -63015497 + MERVL_2A-int LTR ERVL 5564 5665 -96 2 1321 353 204 50 87 chr3 96584286 96584355 -63015428 + ORR1A3-int LTR MaLR 551 613 -1350 2 1321 1602 67 0 0 chr3 96584355 96584564 -63015219 + MT2C_Mm LTR ERVL 1 209 -266 2 1321 184 357 179 35 chr3 96584742 96585032 -63014751 - L2a LINE L2 -1 3425 3094 2 1321 188 375 42 51 chr3 96585198 96585316 -63014467 - L2a LINE L2 -624 2795 2679 2 1321 340 328 171 11 chr3 96585337 96585611 -63014172 - L2a LINE L2 -807 2612 2295 2 1321 1475 44 55 0 chr3 96585628 96585809 -63013974 + L1Md_F3 LINE L1 6380 6570 -14 2 1321 499 319 43 14 chr3 96585841 96585981 -63013802 + B1F2 SINE Alu 6 149 0 2 1321 849 320 75 34 chr3 96586539 96586942 -63012841 - MLT1F LTR MaLR -65 483 65 2 1321 1698 37 0 0 chr3 96587331 96587519 -63012264 - B2_Mm1a SINE B2 -4 189 2 2 1321 1444 58 20 64 chr3 96588023 96588226 -63011557 - B2_Mm2 SINE B2 0 195 2 2 1321 720 176 17 0 chr3 96590697 96590816 -63008967 + B1F2 SINE Alu 8 128 -21 2 1321 225 0 0 0 chr3 96591643 96591668 -63008115 + (T)n Simple_repeat Simple_repeat 1 25 0 2 1321 1201 108 21 46 chr3 96591694 96591888 -63007895 - B2_Mm2 SINE B2 -5 190 2 2 1321 753 268 39 0 chr3 96591926 96592079 -63007704 - RSINE1 SINE B4 -4 161 3 2 1321 272 250 140 0 chr3 96592328 96592428 -63007355 - PB1D10 SINE Alu 0 117 4 2 1321 658 260 50 39 chr3 96592998 96593178 -63006605 - B3A SINE B2 -16 182 1 2 1321 882 238 129 31 chr3 96593459 96593715 -63006068 - B4 SINE B4 -8 284 4 2 1321 611 237 22 15 chr3 96595436 96595573 -63004210 + B1F1 SINE Alu 12 149 0 2 1321 240 352 14 0 chr3 96595586 96595657 -63004126 + tRNA-Ala-GCY_ tRNA tRNA 1 72 -3 2 1321 669 282 174 26 chr3 96596273 96596689 -63003094 - MLT2B4 LTR ERVL -16 551 6 2 1321 398 294 162 38 chr3 96596993 96597333 -63002450 - MTD LTR MaLR -4 375 18 2 1321 1698 217 46 0 chr3 96597610 96597960 -63001823 - ORR1D1 LTR MaLR 0 374 9 2 1321 329 288 0 0 chr3 96598177 96598250 -63001533 - HAL1-3A_ME LINE L1 -810 2048 1976 2 1321 290 100 40 0 chr3 96598250 96598300 -63001483 + (TATG)n Simple_repeat Simple_repeat 2 53 0 2 1321 794 86 0 0 chr3 96598300 96598405 -63001378 - B1_Mus2 SINE Alu 0 147 43 2 1321 33 25 0 0 chr3 96598569 96598609 -63001174 + AT_rich Low_complexity Low_complexity 1 40 0 2 1321 2783 133 22 38 chr3 96598621 96598732 -63001051 + L1_Mur3 LINE L1 2057 2164 -3716 2 1321 1055 38 103 29 chr3 96598732 96598868 -63000915 + B1_Mus2 SINE Alu 2 147 0 2 1321 2783 133 22 38 chr3 96598868 96599256 -63000527 + L1_Mur3 LINE L1 2165 2548 -3332 2 1321 1850 156 41 74 chr3 96599263 96599629 -63000154 + ORR1B1 LTR MaLR 41 394 0 2 1321 5953 123 126 73 chr3 96599629 96599718 -63000065 + L1_Mur3 LINE L1 2548 2625 -3255 2 1321 1312 41 0 0 chr3 96599718 96599865 -62999918 - B1_Mus2 SINE Alu 0 147 1 2 165 5953 123 126 73 chr3 96599865 96600464 -62999319 + L1_Mur3 LINE L1 2626 3335 -2545 2 1322 1317 14 7 14 chr3 96600464 96600612 -62999171 + B1_Mm SINE Alu 1 147 0 2 1322 5953 123 126 73 chr3 96600612 96601235 -62998548 + L1_Mur3 LINE L1 3336 3930 -1950 2 1322 386 229 0 0 chr3 96601235 96601305 -62998478 + B1_Mus2 SINE Alu 1 70 -77 2 1322 795 211 217 21 chr3 96601470 96601802 -62997981 + MT2B LTR ERVL 1 540 -61 2 1322 235 162 0 0 chr3 96601897 96601934 -62997849 + MT2B LTR ERVL 497 533 0 2 1322 234 276 93 47 chr3 96602445 96602574 -62997209 - Charlie23a DNA MER1_type -59 280 146 2 1322 276 30 0 0 chr3 96602589 96602622 -62997161 + (TA)n Simple_repeat Simple_repeat 2 34 0 2 1322 545 117 146 0 chr3 96603331 96603434 -62996349 + B3 SINE B2 98 215 -1 2 1322 394 282 182 32 chr3 96603629 96603882 -62995901 - B4A SINE B4 -1 291 1 2 1322 559 214 62 49 chr3 96603914 96604076 -62995707 + RSINE1 SINE B4 2 165 0 2 1322 520 172 85 8 chr3 96604300 96604429 -62995354 - RSINE1 SINE B4 -25 140 2 2 1322 1468 60 16 0 chr3 96606677 96606859 -62992924 + B2_Mm1a SINE B2 2 186 -7 2 1322 185 298 70 88 chr3 96607163 96607277 -62992506 + MIRm SINE MIR 153 264 -12 2 1322 814 119 41 14 chr3 96607395 96607540 -62992243 - URR1A DNA MER1_type 0 226 78 2 1322 298 329 134 0 chr3 96608437 96608519 -62991264 - B1F1 SINE Alu -56 93 1 2 1322 335 300 12 0 chr3 96608544 96608624 -62991159 + ID4_ SINE ID 1 81 -2 2 1322 364 231 49 41 chr3 96608643 96608765 -62991018 - HAL1 LINE L1 -844 1663 1541 2 1322 204 387 39 31 chr3 96609119 96609247 -62990536 + MIR SINE MIR 20 148 -60 2 1322 1023 222 179 12 chr3 96610008 96610327 -62989456 - ORR1D1 LTR MaLR -2 372 1 2 1322 246 160 0 57 chr3 96610629 96610682 -62989101 - RMER4B LTR ERVK -143 442 393 2 1322 2146 139 68 16 chr3 96610688 96611053 -62988730 - RMER4B LTR ERVK -170 415 32 2 1322 1145 96 7 0 chr3 96611056 96611202 -62988581 - B1_Mus2 SINE Alu 0 147 1 2 1322 310 58 154 0 chr3 96611203 96611255 -62988528 - RMER4B LTR ERVK -525 60 1 2 1322 447 36 0 0 chr3 96611401 96611456 -62988327 + ORR1A3 LTR MaLR 272 326 0 2 1322 1197 85 0 0 chr3 96611776 96611952 -62987831 + (TTCC)n Simple_repeat Simple_repeat 3 178 0 2 1322 637 247 186 21 chr3 96612221 96612457 -62987326 + RMER21B LTR ERV1 293 567 -275 2 1322 375 169 0 0 chr3 96613103 96613174 -62986609 + (TA)n Simple_repeat Simple_repeat 2 72 0 2 1322 22 56 0 0 chr3 96613589 96613625 -62986158 + AT_rich Low_complexity Low_complexity 1 36 0 2 1322 231 261 0 55 chr3 96613849 96613922 -62985861 + A-rich Low_complexity Low_complexity 2 70 0 2 1322 456 179 264 0 chr3 96614030 96614136 -62985647 + B1_Mur4 SINE Alu 11 144 -6 2 1322 43 35 0 0 chr3 96615109 96615166 -62984617 + AT_rich Low_complexity Low_complexity 1 57 0 2 1322 418 281 215 63 chr3 96615210 96615480 -62984303 - ORR1E LTR MaLR -5 354 44 2 1322 995 112 136 109 chr3 96615856 96615985 -62983798 + URR1A DNA MER1_type 1 158 -68 2 1322 1188 51 0 0 chr3 96615985 96616123 -62983660 + B1_Mm SINE Alu 1 138 -9 2 1322 995 112 136 109 chr3 96616123 96616213 -62983570 + URR1A DNA MER1_type 159 226 0 2 1322 266 324 56 0 chr3 96616218 96616326 -62983457 + MIRb SINE MIR 42 155 -113 2 1322 218 323 31 0 chr3 96616505 96616570 -62983213 - MIRb SINE MIR -144 124 58 2 1322 414 281 46 123 chr3 96616792 96616987 -62982796 + B3 SINE B2 37 216 0 2 1322 829 143 14 0 chr3 96617147 96617287 -62982496 - B3 SINE B2 -5 211 70 2 1322 770 80 60 26 chr3 96618144 96618260 -62981523 - B1_Mus2 SINE Alu -18 129 10 2 1322 334 295 136 23 chr3 96618163 96618295 -62981488 - B4 SINE B4 -88 204 58 2 1322 457 223 45 30 chr3 96618811 96618945 -62980838 - RMER5 LTR ERV1 -281 253 118 2 1322 242 229 257 0 chr3 96618943 96619013 -62980770 + PB1D10 SINE Alu 18 105 -12 2 1322 231 36 0 0 chr3 96619013 96619041 -62980742 + (CAA)n Simple_repeat Simple_repeat 3 30 0 2 1322 387 243 187 34 chr3 96620032 96620217 -62979566 - B3A SINE B2 0 216 2 2 1322 464 18 0 0 chr3 96620229 96620286 -62979497 + B1_Mm SINE Alu 91 147 0 3 1322 183 156 0 0 chr3 96620509 96620541 -62979242 + CT-rich Low_complexity Low_complexity 1 32 0 3 1322 598 209 0 0 chr3 96620553 96620658 -62979125 - PB1D9 SINE Alu -7 113 9 3 1322 264 286 47 12 chr3 96620583 96620668 -62979115 - B4A SINE B4 -124 168 81 3 1322 253 259 51 85 chr3 96620668 96620698 -62979085 - MT2B LTR ERVL -360 238 128 3 1322 22 0 0 0 chr3 96620742 96620764 -62979019 + AT_rich Low_complexity Low_complexity 1 22 0 3 1322 4901 232 121 32 chr3 96620925 96622529 -62977254 - Lx7 LINE L1 -309 7387 5641 3 1322 2964 75 42 0 chr3 96622644 96623028 -62976755 + MTB LTR MaLR 1 400 0 3 1322 420 271 191 35 chr3 96623073 96623272 -62976511 + MIR SINE MIR 32 261 -1 3 1322 251 246 0 84 chr3 96623336 96623407 -62976376 + B1F2 SINE Alu 1 65 -84 3 1322 1313 51 0 6 chr3 96623511 96623690 -62976093 + (TTTC)n Simple_repeat Simple_repeat 3 180 0 3 1322 567 43 0 0 chr3 96623692 96623762 -62976021 + (TTCC)n Simple_repeat Simple_repeat 3 72 0 3 1322 347 246 14 0 chr3 96623762 96623831 -62975952 - ID4_ SINE ID -3 80 11 3 1322 4018 161 132 58 chr3 96625177 96626015 -62973768 - RMER19B LTR ERVK -2 900 1 3 1322 338 328 24 40 chr3 96626142 96626266 -62973517 - PB1 SINE Alu -5 122 1 3 1322 253 297 15 106 chr3 96626159 96626291 -62973492 - ID_B1 SINE B4 -49 175 56 3 1322 1289 143 36 18 chr3 96626507 96626727 -62973056 + URR1B DNA MER1_type 1 224 -1 3 1322 1910 158 112 8 chr3 96626963 96627320 -62972463 - ORR1B1 LTR MaLR 0 394 1 3 1322 890 236 85 0 chr3 96627347 96627546 -62972237 + B3 SINE B2 1 216 0 3 1322 243 337 9 37 chr3 96628061 96628169 -62971614 + MIR SINE MIR 17 121 -87 3 1322 466 308 62 94 chr3 96628241 96628517 -62971266 + L1M3 LINE L1 5319 5585 -598 3 1322 335 198 148 0 chr3 96628640 96628721 -62971062 + L1M3 LINE L1 5571 5663 -649 3 1322 360 252 52 0 chr3 96628722 96628837 -62970946 + RSINE1 SINE B4 1 121 -44 3 1322 254 320 78 32 chr3 96629010 96629291 -62970492 + L1MB3 LINE L1 5888 6181 -2 3 1322 246 171 143 0 chr3 96629563 96629633 -62970150 + B1_Mus2 SINE Alu 46 125 -22 3 1322 382 248 58 107 chr3 96629645 96629738 -62970045 + B3A SINE B2 70 162 -36 3 1322 354 61 0 0 chr3 96629738 96629787 -62969996 + (CA)n Simple_repeat Simple_repeat 2 50 0 3 1322 243 236 66 124 chr3 96629787 96629827 -62969956 + B2_Mm2 SINE B2 157 194 -1 3 1322 835 75 0 8 chr3 96629909 96630030 -62969753 - Lx LINE L1 -3 6651 6532 3 1322 765 188 7 15 chr3 96630030 96630165 -62969618 + B1_Mm SINE Alu 13 146 -1 3 1322 423 255 12 92 chr3 96630706 96630870 -62968913 - RSINE1 SINE B4 -13 152 2 3 1322 975 159 165 0 chr3 96631569 96631720 -62968063 + B3 SINE B2 1 165 -51 3 1322 369 0 0 0 chr3 96631720 96631761 -62968022 + (CA)n Simple_repeat Simple_repeat 2 42 0 3 1322 975 159 165 0 chr3 96631761 96631791 -62967992 + B3 SINE B2 166 210 -6 3 1322 248 315 11 11 chr3 96635243 96635336 -62964447 + MIR3 SINE MIR 88 180 -28 3 1322 209 326 72 21 chr3 96635507 96635604 -62964179 + L2a LINE L2 3311 3412 -14 3 1322 250 297 66 32 chr3 96636774 96636908 -62962875 + L2c LINE L2 3201 3365 -22 3 1322 284 186 32 48 chr3 96637180 96637242 -62962541 - B3A SINE B2 -122 76 16 3 1322 340 283 49 141 chr3 96637366 96637551 -62962232 + ID_B1 SINE B4 3 170 -54 3 1322 808 198 42 18 chr3 96637567 96637690 -62962093 - B2_Mm2 SINE B2 -1 215 73 3 1322 229 246 83 106 chr3 96637690 96637822 -62961961 + BC1_Mm scRNA scRNA 4 132 -20 3 1322 210 233 0 0 chr3 96638495 96638538 -62961245 + CT-rich Low_complexity Low_complexity 3 45 0 3 1322 616 188 249 24 chr3 96638545 96638714 -62961069 - B3 SINE B2 -7 209 3 3 1322 480 189 158 45 chr3 96640281 96640414 -62959369 + B1_Mur1 SINE Alu 2 149 0 3 1322 567 213 37 0 chr3 96640791 96640899 -62958884 - PB1D10 SINE Alu 0 117 6 3 1322 771 307 65 55 chr3 96640952 96641316 -62958467 - MLT1B LTR MaLR -10 380 4 3 1322 326 313 0 10 chr3 96642156 96642256 -62957527 - B3 SINE B2 0 216 118 3 1322 782 253 6 30 chr3 96642289 96642456 -62957327 - B3 SINE B2 -49 167 5 3 1322 261 0 0 0 chr3 96642795 96642824 -62956959 + (CA)n Simple_repeat Simple_repeat 2 30 0 3 1322 1645 36 0 0 chr3 96642827 96643019 -62956764 - B2_Mm1a SINE B2 0 193 2 3 1322 495 257 0 0 chr3 96643023 96643128 -62956655 - PB1D9 SINE Alu -15 105 1 3 1322 222 37 0 0 chr3 96643572 96643599 -62956184 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 3 1322 672 80 0 0 chr3 96643729 96643829 -62955954 + (TA)n Simple_repeat Simple_repeat 2 101 0 3 1322 1066 186 6 0 chr3 96643860 96644037 -62955746 - B3 SINE B2 -38 178 1 3 1322 338 287 92 34 chr3 96644333 96644452 -62955331 + B4 SINE B4 69 194 -98 3 1322 655 152 0 33 chr3 96644355 96644477 -62955306 + B1_Mus1 SINE Alu 9 126 -22 3 1322 297 0 0 0 chr3 96644483 96644516 -62955267 + (TC)n Simple_repeat Simple_repeat 2 34 0 3 1322 372 273 14 21 chr3 96644565 96644707 -62955076 + (TG)n Simple_repeat Simple_repeat 2 142 0 3 1322 464 277 17 17 chr3 96644722 96644902 -62954881 + (TG)n Simple_repeat Simple_repeat 1 180 0 3 1322 457 281 11 22 chr3 96644930 96645112 -62954671 + (TG)n Simple_repeat Simple_repeat 1 180 0 3 1322 480 271 17 17 chr3 96645138 96645318 -62954465 + (TG)n Simple_repeat Simple_repeat 1 180 0 3 1322 380 281 14 14 chr3 96645346 96645487 -62954296 + (TG)n Simple_repeat Simple_repeat 2 142 0 3 1322 466 277 17 17 chr3 96645502 96645682 -62954101 + (TG)n Simple_repeat Simple_repeat 1 180 0 3 1322 427 292 11 22 chr3 96645761 96645943 -62953840 + (TG)n Simple_repeat Simple_repeat 1 180 0 3 1322 473 275 11 22 chr3 96645969 96646151 -62953632 + (TG)n Simple_repeat Simple_repeat 1 180 0 3 1322 269 265 12 12 chr3 96646177 96646261 -62953522 + (TG)n Simple_repeat Simple_repeat 1 84 0 3 1322 427 292 11 22 chr3 96646281 96646463 -62953320 + (TG)n Simple_repeat Simple_repeat 1 180 0 3 1322 473 275 11 22 chr3 96646489 96646671 -62953112 + (TG)n Simple_repeat Simple_repeat 1 180 0 3 1322 464 277 11 22 chr3 96646697 96646930 -62952853 + (TG)n Simple_repeat Simple_repeat 1 230 0 3 1322 311 313 5 48 chr3 96646853 96647041 -62952742 + (TATG)n Simple_repeat Simple_repeat 1 180 0 3 1322 480 271 17 17 chr3 96647061 96647241 -62952542 + (TG)n Simple_repeat Simple_repeat 1 180 0 3 1322 443 286 11 22 chr3 96647269 96647451 -62952332 + (TG)n Simple_repeat Simple_repeat 1 180 0 3 1322 475 275 11 22 chr3 96647477 96647659 -62952124 + (TG)n Simple_repeat Simple_repeat 1 180 0 3 1322 370 289 21 7 chr3 96647685 96647828 -62951955 + (TG)n Simple_repeat Simple_repeat 2 146 0 3 1322 448 281 11 22 chr3 96647844 96648026 -62951757 + (TG)n Simple_repeat Simple_repeat 1 180 0 3 1322 464 277 11 22 chr3 96648052 96648233 -62951550 + (TG)n Simple_repeat Simple_repeat 2 180 0 3 1322 311 313 5 48 chr3 96648156 96648344 -62951439 + (TATG)n Simple_repeat Simple_repeat 1 180 0 3 1322 473 275 11 22 chr3 96648364 96648546 -62951237 + (TG)n Simple_repeat Simple_repeat 1 180 0 3 1322 273 273 11 11 chr3 96648572 96648661 -62951122 + (TG)n Simple_repeat Simple_repeat 2 90 0 3 1322 489 270 11 22 chr3 96648676 96648858 -62950925 + (TG)n Simple_repeat Simple_repeat 1 180 0 3 1322 489 270 11 22 chr3 96648884 96649066 -62950717 + (TG)n Simple_repeat Simple_repeat 1 180 0 3 1322 826 232 126 42 chr3 96649110 96649348 -62950435 - B4 SINE B4 -2 290 33 3 1322 632 184 24 16 chr3 96649355 96649482 -62950301 - B1_Mur1 SINE Alu -21 128 1 3 1322 456 271 34 51 chr3 96649482 96649546 -62950237 - ID SINE ID -204 88 26 3 1322 279 0 0 0 chr3 96652485 96652516 -62947267 + (TG)n Simple_repeat Simple_repeat 1 31 0 3 1322 908 161 0 16 chr3 96652710 96652964 -62946819 + C-rich Low_complexity Low_complexity 1 249 0 3 1322 1017 212 99 29 chr3 96653310 96653582 -62946201 + B4A SINE B4 2 292 0 3 1322 665 189 6 0 chr3 96653582 96653746 -62946037 + (CA)n Simple_repeat Simple_repeat 1 165 0 3 1322 180 319 72 48 chr3 96653859 96653984 -62945799 - L2 LINE L2 -966 2453 2326 3 1322 786 186 49 14 chr3 96654546 96654688 -62945095 + RSINE1 SINE B4 2 148 -17 3 1322 1139 155 130 0 chr3 96654972 96655172 -62944611 - URR1A DNA MER1_type 0 226 1 3 1322 785 169 66 0 chr3 96655934 96656070 -62943713 - B1_Mus1 SINE Alu -3 145 1 3 1322 234 0 0 0 chr3 96656142 96656168 -62943615 + (TG)n Simple_repeat Simple_repeat 1 26 0 3 1322 509 265 113 8 chr3 96656931 96657064 -62942719 + RSINE1 SINE B4 3 149 -16 3 1322 204 40 0 0 chr3 96657068 96657093 -62942690 + (CATG)n Simple_repeat Simple_repeat 2 26 0 3 1322 198 71 0 0 chr3 96657389 96657417 -62942366 + (TGAA)n Simple_repeat Simple_repeat 4 31 0 3 1322 459 141 0 0 chr3 96657886 96657964 -62941819 + (TCC)n Simple_repeat Simple_repeat 1 78 0 3 1322 384 77 0 0 chr3 96658155 96658207 -62941576 + (TG)n Simple_repeat Simple_repeat 2 53 0 3 1322 612 296 7 14 chr3 96658208 96658355 -62941428 - RSINE1 SINE B4 -16 149 4 3 1322 1282 80 6 11 chr3 96658848 96659024 -62940759 + B2_Mm2 SINE B2 1 175 -20 3 1322 524 224 80 27 chr3 96659003 96659191 -62940592 + MER44A DNA MER2_type 81 278 -61 3 1322 237 336 134 16 chr3 96659246 96659266 -62940517 - Tigger7 DNA MER2_type -2309 182 164 3 1322 261 0 0 0 chr3 96659266 96659295 -62940488 + (TG)n Simple_repeat Simple_repeat 1 29 0 3 1322 237 336 134 16 chr3 96659295 96659401 -62940382 - Tigger7 DNA MER2_type -2328 163 41 3 1322 507 33 0 0 chr3 96660056 96660117 -62939666 + (GGA)n Simple_repeat Simple_repeat 1 61 0 3 1322 406 367 36 0 chr3 96660217 96660356 -62939427 - MER63A DNA AcHobo -29 181 38 3 1322 250 279 88 0 chr3 96660760 96660828 -62938955 - PB1D9 SINE Alu -16 104 31 3 1322 842 222 64 11 chr3 96661607 96661794 -62937989 - B3A SINE B2 0 198 2 3 1322 1410 232 143 28 chr3 96661871 96662305 -62937478 - RMER5 LTR ERV1 0 534 51 3 1322 780 184 26 94 chr3 96662452 96662644 -62937139 - B3A SINE B2 0 198 20 3 1322 237 363 112 25 chr3 96662969 96663246 -62936537 + L3 LINE CR1 3380 3680 -809 3 1322 1200 251 16 65 chr3 96663246 96663553 -62936230 + B4 SINE B4 1 292 0 3 1322 180 111 0 0 chr3 96664690 96664717 -62935066 + (CAGG)n Simple_repeat Simple_repeat 2 28 0 3 1322 235 207 0 0 chr3 96665179 96665194 -62934589 + A-rich Low_complexity Low_complexity 1 15 0 3 1322 1259 34 7 0 chr3 96665194 96665340 -62934443 + B1_Mm SINE Alu 1 147 0 3 1322 235 207 0 0 chr3 96665340 96665382 -62934401 + A-rich Low_complexity Low_complexity 16 57 0 3 1322 33129 89 11 6 chr3 96665384 96671076 -62928707 + L1_Mus1 LINE L1 523 6250 -317 3 1322 1215 102 32 11 chr3 96671076 96671264 -62928519 + B2_Mm1t SINE B2 1 192 -1 3 1322 7928 56 3 12 chr3 96671264 96671588 -62928195 + L1_Mus1 LINE L1 6251 6566 -1 3 1322 23 33 0 0 chr3 96671591 96671621 -62928162 + AT_rich Low_complexity Low_complexity 1 30 0 3 1322 355 278 10 10 chr3 96673281 96673379 -62926404 - PB1D10 SINE Alu -2 115 18 3 1322 828 230 56 0 chr3 96675594 96675790 -62923993 + B3 SINE B2 1 207 -9 3 1322 427 281 35 21 chr3 96675814 96675956 -62923827 - RSINE1 SINE B4 -5 160 17 3 1322 370 292 235 13 chr3 96676001 96676150 -62923633 + B3A SINE B2 2 183 -15 4 1322 241 284 118 47 chr3 96676199 96676284 -62923499 + PB1D10 SINE Alu 1 91 -26 4 1322 381 292 91 8 chr3 96676210 96676331 -62923452 + ID_B1 SINE B4 90 220 -4 4 1322 1218 48 0 7 chr3 96676966 96677114 -62922669 - B1_Mus2 SINE Alu 0 147 1 4 1322 202 61 0 57 chr3 96678112 96678129 -62921654 + (A)n Simple_repeat Simple_repeat 1 16 0 4 1322 1146 95 0 0 chr3 96678129 96678276 -62921507 + B1_Mus2 SINE Alu 1 147 0 4 1322 202 61 0 57 chr3 96678276 96678293 -62921490 + (A)n Simple_repeat Simple_repeat 1 17 0 4 1322 360 327 122 9 chr3 96678532 96678754 -62921029 + B4 SINE B4 27 273 -19 4 1322 728 219 0 44 chr3 96679711 96679869 -62919914 + RSINE1 SINE B4 15 165 0 4 1322 24 32 0 0 chr3 96679869 96679900 -62919883 + AT_rich Low_complexity Low_complexity 1 31 0 4 1322 835 116 8 8 chr3 96680147 96680277 -62919506 + B3 SINE B2 1 130 -86 4 1322 522 0 0 0 chr3 96680289 96680347 -62919436 + (TAAAA)n Simple_repeat Simple_repeat 5 62 0 4 1322 494 236 52 20 chr3 96680759 96680933 -62918850 + L1M4b LINE L1 3483 3628 -3706 4 1322 994 161 0 7 chr3 96681255 96681405 -62918378 + B1F2 SINE Alu 1 149 0 4 1322 504 117 0 0 chr3 96681757 96681834 -62917949 + (GA)n Simple_repeat Simple_repeat 2 78 0 4 1322 238 157 169 14 chr3 96681836 96681907 -62917876 + L1M4b LINE L1 4114 4195 -2811 4 1322 297 299 37 128 chr3 96681926 96682114 -62917669 + B4 SINE B4 4 174 -118 4 1322 772 208 261 58 chr3 96682204 96682598 -62917185 - RLTR40 LTR ERVK -89 728 255 4 1322 273 314 97 41 chr3 96682678 96682874 -62916909 + L1ME1 LINE L1 5945 6151 -28 4 1322 342 278 81 96 chr3 96683584 96683855 -62915928 + B4 SINE B4 4 270 -22 4 1322 250 172 15 30 chr3 96683906 96683972 -62915811 + (TAA)n Simple_repeat Simple_repeat 2 66 0 4 1322 188 288 75 0 chr3 96684259 96684339 -62915444 - MIR SINE MIR -91 171 86 4 1322 301 245 92 0 chr3 96685032 96685130 -62914653 - MIRb SINE MIR -69 199 93 4 1322 294 263 220 0 chr3 96686158 96686276 -62913507 + MIR3 SINE MIR 44 187 -21 4 1322 430 153 14 0 chr3 96688092 96688164 -62911619 + B1_Mur4 SINE Alu 1 73 -77 4 1322 341 285 75 11 chr3 96688177 96688351 -62911432 - L1MD LINE L1 -511 5731 5547 4 1322 633 258 60 0 chr3 96688397 96688564 -62911219 - B3A SINE B2 -18 180 4 4 1322 613 258 131 10 chr3 96688716 96689029 -62910754 - L1MD LINE L1 -835 5311 4961 4 1322 21 0 0 0 chr3 96689035 96689056 -62910727 + AT_rich Low_complexity Low_complexity 1 21 0 4 1322 4063 131 63 17 chr3 96689655 96690302 -62909481 - RMER1B Other Other 0 1066 390 4 1322 766 199 0 27 chr3 96690359 96690509 -62909274 - B1_Mus1 SINE Alu 0 148 3 4 1322 198 0 0 0 chr3 96691920 96691942 -62907841 + (TC)n Simple_repeat Simple_repeat 1 22 0 4 1322 356 55 18 0 chr3 96691992 96692047 -62907736 + (TTTA)n Simple_repeat Simple_repeat 1 56 0 4 1322 1337 18 0 0 chr3 96692047 96692208 -62907575 - B2_Mm2 SINE B2 -29 166 6 4 1322 295 313 53 0 chr3 96692776 96692907 -62906876 - B1F SINE Alu -11 138 1 4 1322 324 143 0 0 chr3 96693238 96693294 -62906489 + (GGGA)n Simple_repeat Simple_repeat 2 57 0 4 1322 399 260 167 37 chr3 96693307 96693523 -62906260 + RMER15 LTR ERVL 280 523 -52 4 1322 238 254 144 36 chr3 96694111 96694128 -62905655 - CYRA11_Mm Unknown Y-chromosome -292 325 172 4 1322 531 151 148 25 chr3 96694128 96694250 -62905533 + URR1B DNA MER1_type 88 224 -1 4 1322 667 232 109 10 chr3 96694250 96694442 -62905341 + B3 SINE B2 2 212 -4 4 1322 288 340 39 10 chr3 96694552 96694595 -62905188 + B4 SINE B4 40 85 -207 4 1322 377 296 23 0 chr3 96694595 96694683 -62905100 + PB1D10 SINE Alu 1 90 -27 4 1322 946 171 143 11 chr3 96694970 96695159 -62904624 - B3 SINE B2 0 216 3 4 1322 3072 85 2 2 chr3 96695300 96695700 -62904083 + MTB LTR MaLR 1 400 0 4 1322 622 252 28 0 chr3 96695726 96695869 -62903914 - RSINE1 SINE B4 -10 155 9 4 1322 573 266 7 0 chr3 96696186 96696325 -62903458 + RSINE1 SINE B4 20 159 -6 4 1322 585 167 51 34 chr3 96697660 96697778 -62902005 + B1_Mur4 SINE Alu 21 140 -10 4 1322 317 317 28 19 chr3 96697804 96697910 -62901873 + PB1D10 SINE Alu 10 116 -1 4 1322 198 0 0 0 chr3 96698053 96698075 -62901708 + (CAA)n Simple_repeat Simple_repeat 2 23 0 4 1322 406 305 53 0 chr3 96698129 96698260 -62901523 + ID_B1 SINE B4 79 216 -8 4 1322 210 133 62 62 chr3 96698223 96698271 -62901512 + PB1D7 SINE Alu 73 120 0 4 1322 609 214 63 0 chr3 96698271 96698397 -62901386 + RSINE1 SINE B4 1 134 -31 4 1322 31 26 0 0 chr3 96698421 96698459 -62901324 + AT_rich Low_complexity Low_complexity 1 38 0 4 1322 813 207 0 0 chr3 96698600 96698735 -62901048 + B1_Mur1 SINE Alu 5 139 -10 4 1322 1339 247 152 63 chr3 96698801 96699574 -62900209 - L1MB8 LINE L1 -39 6139 5293 4 1322 384 278 82 0 chr3 96699634 96699791 -62899992 - L1MB8 LINE L1 -801 5345 5176 4 1322 819 185 104 16 chr3 96700481 96700673 -62899110 + B3 SINE B2 3 211 -5 4 1322 2701 79 14 0 chr3 96700829 96701192 -62898591 + L1_Mus4 LINE L1 5828 6204 -432 4 1322 334 312 26 77 chr3 96702076 96702095 -62897688 + B4 SINE B4 72 219 -73 4 1322 754 204 0 0 chr3 96702095 96702232 -62897551 + B1F SINE Alu 6 142 -7 4 1322 1965 234 44 39 chr3 96702729 96703338 -62896445 - L1_Rod LINE L1 -1235 4612 4001 4 1322 3261 245 25 26 chr3 96703371 96704254 -62895529 + Lx9 LINE L1 6168 7049 -595 4 1322 256 276 95 3 chr3 96704956 96705069 -62894714 - L2c LINE L2 -51 3336 3200 4 1322 305 136 15 0 chr3 96705739 96705805 -62893978 + GA-rich Low_complexity Low_complexity 1 67 0 4 1322 348 238 35 12 chr3 96706150 96706235 -62893548 + PB1 SINE Alu 34 120 -7 4 1322 180 111 0 0 chr3 96706239 96706266 -62893517 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 4 1322 252 0 0 0 chr3 96706366 96706394 -62893389 + (T)n Simple_repeat Simple_repeat 1 28 0 4 1322 228 306 139 0 chr3 96706650 96706758 -62893025 - L2c LINE L2 -4 3383 3261 4 1322 561 229 54 20 chr3 96707192 96707339 -62892444 - RSINE1 SINE B4 -10 155 4 4 1322 25 31 0 0 chr3 96709423 96709455 -62890328 + AT_rich Low_complexity Low_complexity 1 32 0 4 1322 2231 161 60 15 chr3 96710197 96710373 -62889410 - MTC LTR MaLR 0 421 241 4 1322 378 0 0 0 chr3 96710373 96710415 -62889368 + (TG)n Simple_repeat Simple_repeat 2 43 0 4 1322 2231 161 60 15 chr3 96710415 96710641 -62889142 - MTC LTR MaLR -181 240 2 4 1322 805 310 13 60 chr3 96711221 96711523 -62888260 - B4A SINE B4 0 292 5 4 1322 521 231 17 8 chr3 96711663 96711781 -62888002 - B4 SINE B4 -79 213 95 4 1322 329 93 0 18 chr3 96712142 96712197 -62887586 + (GAAAA)n Simple_repeat Simple_repeat 3 56 0 4 1322 1175 36 0 7 chr3 96712759 96712898 -62886885 + B1_Mm SINE Alu 1 138 -9 4 1322 330 26 0 0 chr3 96712898 96712937 -62886846 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 4 1322 1168 100 6 0 chr3 96712951 96713121 -62886662 + B2_Mm1t SINE B2 1 171 -22 4 1322 456 89 313 26 chr3 96713191 96713306 -62886477 + B2_Mm2 SINE B2 47 194 -1 4 1322 407 165 164 10 chr3 96713316 96713420 -62886363 + PB1D9 SINE Alu 1 120 0 4 1322 813 225 6 18 chr3 96713738 96713901 -62885882 - RSINE1 SINE B4 0 165 5 4 1322 703 316 69 23 chr3 96714082 96714423 -62885360 + MLT1F LTR MaLR 58 411 -137 4 1322 735 215 151 43 chr3 96714666 96715005 -62884778 + RLTRETN_Mm LTR ERVK 6 322 0 4 1322 255 122 0 0 chr3 96715547 96715596 -62884187 + (TCTCTG)n Simple_repeat Simple_repeat 6 54 0 4 1322 694 185 165 7 chr3 96715611 96715787 -62883996 + B3 SINE B2 17 210 -6 4 1322 1260 153 92 78 chr3 96716480 96716763 -62883020 + Lx5 LINE L1 6748 7034 -16 4 1322 216 67 0 0 chr3 96716763 96716793 -62882990 + (TGAA)n Simple_repeat Simple_repeat 1 30 0 4 1322 243 228 102 65 chr3 96717063 96717171 -62882612 - MLT1A0 LTR MaLR -259 115 2 4 1322 544 262 79 56 chr3 96717175 96717389 -62882394 + MER63B DNA AcHobo 217 435 -1 4 1322 226 278 86 9 chr3 96719566 96719682 -62880101 - MIRc SINE MIR -81 187 63 4 1322 594 250 30 53 chr3 96720634 96720752 -62879031 + RMER30 DNA MER1_type 2 122 -80 4 1322 2402 149 44 19 chr3 96720752 96721162 -62878621 + MTC LTR MaLR 1 420 -1 4 1322 594 250 30 53 chr3 96721162 96721212 -62878571 + RMER30 DNA MER1_type 123 166 -36 4 1322 707 83 45 0 chr3 96721321 96721453 -62878330 + (TCTA)n Simple_repeat Simple_repeat 3 140 0 4 1322 252 0 0 0 chr3 96722329 96722357 -62877426 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 4 1322 285 303 27 9 chr3 96722410 96722520 -62877263 + MER102c DNA MER1_type 219 330 -1 4 1322 202 254 15 73 chr3 96724464 96724532 -62875251 + MIRc SINE MIR 132 195 -73 4 1322 1430 75 37 0 chr3 96725641 96725829 -62873954 + B2_Mm2 SINE B2 1 195 0 4 1322 329 26 0 0 chr3 96726259 96726297 -62873486 - L1Md_F3 LINE L1 -407 6175 6138 4 1322 3120 48 0 86 chr3 96726297 96726730 -62873053 + L1Md_F3 LINE L1 6175 6570 -14 4 1322 301 237 125 50 chr3 96727799 96727919 -62871864 - RSINE1 SINE B4 -35 130 2 4 1322 877 222 53 0 chr3 96727966 96728155 -62871628 - B3 SINE B2 -15 201 3 4 1322 315 357 43 60 chr3 96728641 96728942 -62870841 - Charlie18a DNA MER1_type -43 299 4 4 1322 209 306 58 23 chr3 96728983 96729070 -62870713 - MIRc SINE MIR -148 120 31 4 1322 850 325 66 47 chr3 96730496 96730967 -62868816 + Lx8 LINE L1 6275 6754 -719 4 165 1088 353 44 18 chr3 96730989 96731603 -62868180 + Lx8 LINE L1 6842 7471 -2 4 1323 575 216 63 100 chr3 96731947 96732137 -62867646 - B3A SINE B2 0 198 16 5 1323 424 208 112 9 chr3 96732188 96732295 -62867488 - PB1 SINE Alu 0 127 10 5 1323 300 352 0 9 chr3 96732981 96733087 -62866696 + C-rich Low_complexity Low_complexity 3 107 0 5 1323 357 239 44 0 chr3 96733089 96733205 -62866578 - B1F SINE Alu -5 144 23 5 1323 260 210 0 88 chr3 96733330 96733398 -62866385 - B1F SINE Alu 0 149 88 5 1323 483 33 0 0 chr3 96733648 96733709 -62866074 + (TG)n Simple_repeat Simple_repeat 2 62 0 5 1323 297 321 15 82 chr3 96733718 96733729 -62866054 - ID_B1 SINE B4 0 224 198 5 1323 585 209 7 58 chr3 96733729 96733866 -62865917 - B1_Mur1 SINE Alu -11 138 9 5 1323 297 321 15 82 chr3 96733866 96733927 -62865856 - ID_B1 SINE B4 0 197 34 5 1323 189 0 0 0 chr3 96734661 96734682 -62865101 + (GA)n Simple_repeat Simple_repeat 2 22 0 5 1323 194 369 83 0 chr3 96734780 96734864 -62864919 + MIR SINE MIR 34 124 -84 5 1323 186 297 130 11 chr3 96734877 96734969 -62864814 + MIRb SINE MIR 166 268 0 5 1323 202 239 26 66 chr3 96735453 96735529 -62864254 - MIRc SINE MIR -195 73 1 5 1323 401 214 10 0 chr3 96736831 96736929 -62862854 + CT-rich Low_complexity Low_complexity 2 100 0 5 1323 444 327 55 38 chr3 96737259 96737612 -62862171 - L1M5 LINE L1 -698 5426 5060 5 1323 216 203 17 0 chr3 96737937 96737996 -62861787 + (CA)n Simple_repeat Simple_repeat 1 60 0 5 1323 221 148 0 32 chr3 96738002 96738065 -62861718 + (CAGAGA)n Simple_repeat Simple_repeat 2 62 0 5 1323 703 206 59 0 chr3 96738272 96738408 -62861375 - B1_Mur1 SINE Alu -5 144 1 5 1323 729 120 0 0 chr3 96738413 96738546 -62861237 + (TC)n Simple_repeat Simple_repeat 1 133 0 5 1323 377 302 66 0 chr3 96738547 96738653 -62861130 - ID_B1 SINE B4 -21 203 91 5 1323 718 279 112 41 chr3 96738886 96739155 -62860628 - B4 SINE B4 0 292 5 5 1323 228 216 0 0 chr3 96739165 96739216 -62860567 + CT-rich Low_complexity Low_complexity 1 51 0 5 1323 482 284 245 38 chr3 96739221 96739433 -62860350 - B4A SINE B4 0 292 37 5 1323 183 236 0 127 chr3 96740075 96740138 -62859645 + MIRc SINE MIR 99 153 -115 5 1323 209 289 62 23 chr3 96740195 96740324 -62859459 + MIR SINE MIR 104 242 -26 5 1323 264 30 0 0 chr3 96740455 96740488 -62859295 + (TTTG)n Simple_repeat Simple_repeat 4 36 0 5 1323 256 214 17 67 chr3 96740494 96740554 -62859229 - ID4 SINE ID 0 83 27 5 1323 268 305 11 68 chr3 96740662 96740750 -62859033 + L2c LINE L2 2789 2871 -548 5 1323 497 121 12 0 chr3 96740779 96740862 -62858921 + (GGA)n Simple_repeat Simple_repeat 3 86 0 5 1323 220 308 17 62 chr3 96741116 96741238 -62858545 + L2c LINE L2 3199 3340 -47 5 1323 234 0 0 0 chr3 96742184 96742210 -62857573 + (ATTG)n Simple_repeat Simple_repeat 2 27 0 5 1323 945 211 54 0 chr3 96742381 96742585 -62857198 + B3 SINE B2 2 216 0 5 1323 233 119 0 23 chr3 96743069 96743112 -62856671 + (TCC)n Simple_repeat Simple_repeat 1 42 0 5 1323 251 300 196 20 chr3 96743739 96743841 -62855942 + MIRb SINE MIR 112 231 -37 5 1323 224 266 0 15 chr3 96743884 96743949 -62855834 + B4 SINE B4 1 64 -228 5 1323 233 353 11 23 chr3 96744049 96744136 -62855647 + RSINE1 SINE B4 76 161 -4 5 1323 1019 201 24 5 chr3 96744202 96744407 -62855376 - B3 SINE B2 -7 209 1 5 1323 266 325 0 0 chr3 96744548 96744562 -62855221 + ID4_ SINE ID 1 76 -6 5 1323 287 258 0 0 chr3 96744562 96744624 -62855159 + tRNA-Ala-GCY_ tRNA tRNA 9 70 -5 5 1323 762 237 39 64 chr3 96744634 96744760 -62855023 + B3A SINE B2 1 132 -66 5 1323 1597 193 77 6 chr3 96744760 96745109 -62854674 + ORR1D1 LTR MaLR 1 374 0 5 1323 762 237 39 64 chr3 96745109 96745185 -62854598 + B3A SINE B2 133 198 0 5 1323 223 326 98 0 chr3 96745221 96745313 -62854470 + MIR SINE MIR 148 248 -14 5 1323 2566 130 60 44 chr3 96745464 96745716 -62854067 - BGLII_B LTR ERVK 0 441 182 5 1323 1637 52 0 0 chr3 96745716 96745909 -62853874 - B2_Mm1t SINE B2 0 193 1 5 1323 2566 130 60 44 chr3 96745909 96746090 -62853693 - BGLII_B LTR ERVK -260 181 1 5 1323 327 49 0 0 chr3 96746244 96746285 -62853498 + (T)n Simple_repeat Simple_repeat 1 41 0 5 1323 299 267 13 0 chr3 96746838 96746913 -62852870 - RMER15 LTR ERVL -108 467 392 5 1323 2405 241 154 41 chr3 96746925 96747673 -62852110 - Lx8 LINE L1 -236 7237 6406 5 1323 259 230 20 121 chr3 96747953 96748052 -62851731 - L2c LINE L2 -5 3382 3294 5 1323 661 269 48 30 chr3 96748329 96748597 -62851186 - L1MA7 LINE L1 -5 6286 6014 5 1323 622 279 35 103 chr3 96748596 96748666 -62851117 + L1MA7 LINE L1 5719 5781 -408 5 1323 407 286 8 16 chr3 96748666 96748794 -62850989 + PB1 SINE Alu 1 127 0 5 1323 625 275 30 43 chr3 96748794 96749047 -62850736 + L1MA7 LINE L1 5782 6015 -276 5 1323 564 89 0 0 chr3 96749462 96749541 -62850242 + (CA)n Simple_repeat Simple_repeat 2 80 0 5 1323 206 103 51 0 chr3 96749810 96749849 -62849934 + (CCAA)n Simple_repeat Simple_repeat 2 42 0 5 1323 848 250 68 0 chr3 96749931 96750123 -62849660 - B3 SINE B2 -7 209 5 5 1323 330 322 134 25 chr3 96750666 96750905 -62848878 - MLT2B2 LTR ERVL -22 533 269 5 1323 386 169 11 0 chr3 96750919 96751008 -62848775 + (GGGTG)n Simple_repeat Simple_repeat 1 90 0 5 1323 688 233 81 129 chr3 96751009 96751280 -62848503 - MLT2B2 LTR ERVL -238 277 20 5 1323 189 370 30 10 chr3 96751830 96751931 -62847852 + L2c LINE L2 3203 3305 -82 5 1323 1033 215 29 12 chr3 96752649 96752894 -62846889 - RCHARR1 DNA MER1_type 0 974 726 5 1323 549 260 81 0 chr3 96752894 96753017 -62846766 + ID_B1 SINE B4 82 214 -10 5 1323 1713 203 38 11 chr3 96753041 96753409 -62846374 - RCHARR1 DNA MER1_type -236 738 361 5 1323 1018 160 0 0 chr3 96753425 96753575 -62846208 - B1_Mur4 SINE Alu 0 150 1 5 1323 22 0 0 0 chr3 96753581 96753603 -62846180 + AT_rich Low_complexity Low_complexity 1 22 0 5 1323 529 123 12 0 chr3 96753612 96753693 -62846090 - PB1D9 SINE Alu -3 117 36 5 1323 572 292 73 56 chr3 96753798 96754030 -62845753 - RCHARR1 DNA MER1_type -723 251 16 5 1323 198 167 0 0 chr3 96754313 96754349 -62845434 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 5 1323 555 299 6 25 chr3 96754349 96754507 -62845276 - RSINE1 SINE B4 -6 159 5 5 1323 216 0 0 0 chr3 96754511 96754535 -62845248 + (TTTTTG)n Simple_repeat Simple_repeat 2 25 0 5 1323 616 209 149 19 chr3 96754590 96754751 -62845032 + MT2A LTR ERVL 3 184 -349 5 1323 839 180 78 51 chr3 96754739 96754956 -62844827 + MT2A LTR ERVL 311 533 0 5 1323 408 384 77 54 chr3 96754956 96755306 -62844477 - L1MEg LINE L1 -5721 363 6 5 1323 244 270 51 57 chr3 96755747 96755892 -62843891 + MIR3 SINE MIR 70 207 -1 5 1323 655 292 52 60 chr3 96756430 96756992 -62842791 + L1M4 LINE L1 5176 5717 -447 5 1323 423 0 0 0 chr3 96757012 96757059 -62842724 + (TG)n Simple_repeat Simple_repeat 2 48 0 5 1323 962 244 15 5 chr3 96757099 96757301 -62842482 - B4 SINE B4 -81 211 8 5 1323 241 216 112 75 chr3 96758353 96758371 -62841412 + B1_Mur1 SINE Alu 59 141 -8 5 1323 281 150 97 32 chr3 96758371 96758433 -62841350 + ID_B1 SINE B4 151 216 -8 5 1323 226 289 92 46 chr3 96758445 96758532 -62841251 + MER21B LTR ERV1 11 101 -762 5 1323 327 269 0 0 chr3 96758544 96758663 -62841120 + (TG)n Simple_repeat Simple_repeat 2 120 0 5 1323 581 346 63 30 chr3 96758714 96759048 -62840735 - MT2A LTR ERVL -144 389 45 5 1323 330 307 97 0 chr3 96758955 96759069 -62840714 - MTE2a LTR MaLR -242 137 13 5 1323 541 303 165 35 chr3 96759223 96759538 -62840245 + MER21B LTR ERV1 290 645 -218 5 1323 360 0 0 0 chr3 96759716 96759756 -62840027 + (TG)n Simple_repeat Simple_repeat 2 41 0 5 1323 1173 133 35 0 chr3 96760041 96760214 -62839569 + B2_Mm1t SINE B2 1 179 -14 5 1323 307 122 330 36 chr3 96760284 96760393 -62839390 + B2_Mm2 SINE B2 47 187 -8 5 1323 426 79 0 0 chr3 96760960 96761023 -62838760 + (GAAA)n Simple_repeat Simple_repeat 1 63 0 5 1323 1227 161 8 59 chr3 96761057 96761295 -62838488 + URR1A DNA MER1_type 1 226 0 5 1323 2947 282 43 26 chr3 96761295 96762267 -62837516 + Lx9 LINE L1 6384 7373 -271 5 1323 333 0 0 0 chr3 96762281 96762318 -62837465 + (TG)n Simple_repeat Simple_repeat 2 38 0 5 1323 647 264 52 0 chr3 96763404 96763559 -62836224 - B3 SINE B2 -6 210 48 5 1323 595 316 88 13 chr3 96763940 96764168 -62835615 - MLT1F2 LTR MaLR 0 560 316 5 1323 188 241 53 126 chr3 96764528 96764623 -62835160 + L2c LINE L2 3291 3378 -9 5 1323 259 92 77 0 chr3 96765443 96765508 -62834275 + (TATATG)n Simple_repeat Simple_repeat 2 71 0 5 1323 332 305 172 39 chr3 96765751 96765983 -62833800 - L3 LINE CR1 -696 3793 3531 5 1323 780 189 13 20 chr3 96766254 96766405 -62833378 - B1_Mur4 SINE Alu 0 150 1 5 1323 390 21 0 0 chr3 96766741 96766788 -62832995 + (CAA)n Simple_repeat Simple_repeat 2 48 0 5 1323 249 317 105 8 chr3 96766829 96766953 -62832830 + L2c LINE L2 3232 3367 -20 5 1323 297 0 0 0 chr3 96767232 96767265 -62832518 + (T)n Simple_repeat Simple_repeat 1 33 0 5 1323 337 367 61 37 chr3 96768208 96768454 -62831329 - L1MC4a LINE L1 -510 7532 7281 5 1323 653 303 124 3 chr3 96768707 96769005 -62830778 - L1MC4a LINE L1 -1085 6797 6464 5 1323 591 277 51 6 chr3 96769394 96769572 -62830211 + MLT1F-int LTR MaLR 937 1122 -367 5 1323 1425 260 70 6 chr3 96769572 96769928 -62829855 - MTEb LTR MaLR 0 379 1 5 1323 474 281 167 26 chr3 96769933 96770160 -62829623 + MLT1F-int LTR MaLR 1124 1382 -107 5 1323 189 0 0 0 chr3 96770165 96770186 -62829597 + (T)n Simple_repeat Simple_repeat 1 21 0 5 1323 1187 54 0 0 chr3 96770186 96770333 -62829450 - B1_Mm SINE Alu 0 147 1 5 1323 712 360 61 35 chr3 96770379 96770886 -62828897 - MT2A LTR ERVL -2 531 12 5 1323 321 296 60 17 chr3 96770917 96771034 -62828749 - MLT1A LTR MaLR -6 368 247 5 1323 230 247 10 133 chr3 96771103 96771201 -62828582 - MLT1A LTR MaLR -230 160 75 5 1323 1304 276 42 65 chr3 96771208 96771777 -62828006 + L1MA4 LINE L1 5386 5941 -359 5 1323 2526 128 36 24 chr3 96771928 96772344 -62827439 - MTC LTR MaLR 0 421 1 5 1323 247 234 0 99 chr3 96772701 96772772 -62827011 + MLT1E LTR MaLR 4 67 -613 6 1323 722 318 58 19 chr3 96772815 96773123 -62826660 + MLT1E LTR MaLR 287 606 -47 6 1323 552 235 61 92 chr3 96773137 96773301 -62826482 - RSINE1 SINE B4 0 165 7 6 1323 249 108 0 0 chr3 96773468 96773505 -62826278 + (CA)n Simple_repeat Simple_repeat 2 38 0 6 1323 573 276 24 6 chr3 96774446 96774616 -62825167 + B3 SINE B2 1 176 -22 6 1323 507 17 0 0 chr3 96774640 96774700 -62825083 + (CA)n Simple_repeat Simple_repeat 1 60 0 6 1323 234 120 0 152 chr3 96774731 96774790 -62824993 + 4.5SRNA scRNA scRNA 39 88 -6 6 1323 502 134 98 49 chr3 96774738 96774840 -62824943 + B1_Mur1 SINE Alu 42 148 -1 6 1323 462 18 0 0 chr3 96774900 96774955 -62824828 + (CA)n Simple_repeat Simple_repeat 1 55 0 6 1323 804 192 155 5 chr3 96775625 96775819 -62823964 + ID_B1 SINE B4 1 223 -1 6 1323 288 0 0 0 chr3 96775907 96775939 -62823844 + (CAGA)n Simple_repeat Simple_repeat 1 32 0 6 1323 269 290 73 18 chr3 96776013 96776122 -62823661 - RMER15 LTR ERVL -15 560 446 6 1323 423 0 0 0 chr3 96776140 96776187 -62823596 + (TG)n Simple_repeat Simple_repeat 1 47 0 6 1323 974 257 9 18 chr3 96776433 96776651 -62823132 - B3 SINE B2 0 216 1 6 1323 192 318 93 12 chr3 96776776 96776862 -62822921 + L2a LINE L2 3322 3414 -12 6 1323 246 254 15 0 chr3 96776968 96777035 -62822748 + B3 SINE B2 143 210 -6 6 1323 25 0 0 0 chr3 96777644 96777669 -62822114 + AT_rich Low_complexity Low_complexity 1 25 0 6 1323 521 261 62 0 chr3 96777682 96777812 -62821971 - RSINE1 SINE B4 -25 140 3 6 1323 704 231 7 7 chr3 96778221 96778369 -62821414 - B1_Mur1 SINE Alu 0 149 2 6 1323 834 128 14 7 chr3 96778468 96778610 -62821173 - URR1B DNA MER1_type 0 225 83 6 1323 705 247 78 50 chr3 96780180 96780454 -62819329 + B4 SINE B4 9 274 -18 6 1323 398 211 26 13 chr3 96781006 96781083 -62818700 + ID4 SINE ID 4 81 -2 6 1323 180 0 0 0 chr3 96781593 96781613 -62818170 + (T)n Simple_repeat Simple_repeat 1 20 0 6 1323 568 188 10 0 chr3 96781662 96781763 -62818020 - B1_Mus2 SINE Alu 0 147 46 6 1323 802 324 115 10 chr3 96782602 96782898 -62816885 + L3 LINE CR1 3421 3747 -742 6 1323 298 295 150 45 chr3 96783007 96783273 -62816510 + L3 LINE CR1 3965 4258 -231 6 1323 406 331 17 34 chr3 96783762 96783937 -62815846 - L2c LINE L2 -187 3200 3029 6 1323 1545 185 184 6 chr3 96784560 96784914 -62814869 + MTD LTR MaLR 3 419 0 6 1323 408 315 161 5 chr3 96785085 96785302 -62814481 + MLT1A0 LTR MaLR 112 362 -3 6 1323 264 291 187 48 chr3 96785950 96786116 -62813667 - MIRb SINE MIR -26 242 54 6 1323 336 255 238 0 chr3 96787413 96787573 -62812210 - MTD LTR MaLR -1 420 223 6 1323 7891 205 25 63 chr3 96787681 96788856 -62810927 - Lx6 LINE L1 -161 7299 6170 6 1323 1624 32 0 0 chr3 96788856 96789042 -62810741 - B2_Mm1t SINE B2 -7 186 1 6 1323 7891 205 25 63 chr3 96789042 96789445 -62810338 - Lx6 LINE L1 -1291 6169 5786 6 1323 209 33 33 0 chr3 96789445 96789475 -62810308 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 6 1323 7891 169 5 15 chr3 96789475 96789782 -62810001 - Lx6 LINE L1 -1675 5785 5477 6 1323 226 135 0 0 chr3 96789801 96789838 -62809945 - Lx6 LINE L1 -365 5512 5476 6 1323 234 178 0 0 chr3 96789986 96790031 -62809752 - L1_Mur2 LINE L1 -357 5520 5476 6 1323 229 97 0 0 chr3 96790055 96790086 -62809697 - L1_Mur2 LINE L1 -371 5506 5476 6 1323 234 178 0 0 chr3 96790096 96790141 -62809642 - L1_Mur2 LINE L1 -357 5520 5476 6 1323 232 178 0 0 chr3 96790151 96790196 -62809587 - L1_Mur2 LINE L1 -357 5520 5476 6 1323 234 178 0 0 chr3 96790234 96790279 -62809504 - L1_Mur2 LINE L1 -357 5520 5476 6 1323 6537 136 124 8 chr3 96790298 96790514 -62809269 - L1_Mur3 LINE L1 -367 5513 5264 6 1323 4126 63 0 17 chr3 96790514 96791046 -62808737 - L1Md_F2 LINE L1 -8 6574 6052 6 1323 6537 136 124 8 chr3 96791046 96791525 -62808258 - L1_Mur3 LINE L1 -617 5263 4726 6 1323 230 0 33 0 chr3 96791525 96791555 -62808228 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 6 1323 6537 136 124 8 chr3 96791555 96792144 -62807639 - L1_Mur3 LINE L1 -1155 4725 4080 6 1323 1059 44 88 0 chr3 96792144 96792280 -62807503 + B1_Mus1 SINE Alu 1 148 0 6 1323 198 91 0 0 chr3 96792282 96792315 -62807468 + (A)n Simple_repeat Simple_repeat 1 33 0 6 1323 381 83 50 0 chr3 96792333 96792393 -62807390 - L1_Mur3 LINE L1 -1793 4087 4025 6 1323 878 216 62 26 chr3 96792415 96792599 -62807184 - MTD LTR MaLR -208 211 21 6 1323 189 0 0 0 chr3 96792599 96792620 -62807163 + (CAAA)n Simple_repeat Simple_repeat 4 24 0 6 1323 519 206 47 0 chr3 96793698 96793805 -62805978 - B3 SINE B2 -4 212 101 6 1323 182 83 56 0 chr3 96794533 96794569 -62805214 + (TTTTG)n Simple_repeat Simple_repeat 1 38 0 6 1323 926 98 195 6 chr3 96794628 96794792 -62804991 + B2_Mm2 SINE B2 1 195 0 6 1323 583 322 80 36 chr3 96795001 96795252 -62804531 + MER45B DNA Tip100 1 262 -778 6 1323 444 300 66 40 chr3 96795277 96795342 -62804441 - MER34A1 LTR ERV1 0 587 523 6 1323 3146 45 204 2 chr3 96795342 96795768 -62804015 - RLTR1B LTR ERV1 0 512 1 6 1323 444 300 66 40 chr3 96795768 96795900 -62803883 - MER34A1 LTR ERV1 -65 522 386 6 1323 1415 212 43 102 chr3 96795910 96796118 -62803665 + MTE2a LTR MaLR 1 197 -182 6 1323 360 0 0 0 chr3 96796118 96796158 -62803625 + (TG)n Simple_repeat Simple_repeat 2 41 0 6 1323 1415 212 43 102 chr3 96796158 96796343 -62803440 + MTE2a LTR MaLR 198 371 -8 6 1323 972 267 0 18 chr3 96797078 96797303 -62802480 - ID_B1 SINE B4 -1 223 3 6 1323 2204 164 39 24 chr3 96797527 96797940 -62801843 - MTD LTR MaLR 0 419 1 6 1323 614 190 8 49 chr3 96798320 96798442 -62801341 + B1F SINE Alu 33 149 0 6 1323 291 371 149 24 chr3 96798431 96798696 -62801087 + LTR85a LTR Gypsy? 209 502 -282 6 1323 333 125 0 0 chr3 96798696 96798752 -62801031 + (CATA)n Simple_repeat Simple_repeat 3 58 0 6 1323 491 288 153 17 chr3 96798752 96798996 -62800787 + LTR85a LTR Gypsy? 480 782 -2 6 1323 432 217 53 32 chr3 96799186 96799281 -62800502 - PB1D10 SINE Alu -12 105 9 6 1323 232 320 9 91 chr3 96799207 96799317 -62800466 - MT2B LTR ERVL -360 241 141 6 1323 385 188 0 36 chr3 96799319 96799402 -62800381 + PB1D10 SINE Alu 36 115 -2 6 1323 627 312 68 104 chr3 96800002 96800503 -62799280 - L2a LINE L2 -2 3424 2942 6 1323 762 266 42 28 chr3 96800980 96801193 -62798590 - ID_B1 SINE B4 -6 218 3 6 1323 253 222 0 0 chr3 96801193 96801247 -62798536 + MLT1I LTR MaLR 330 383 -28 6 1323 621 244 16 0 chr3 96801645 96801772 -62798011 - MTEa LTR MaLR -250 129 1 6 1323 251 114 0 22 chr3 96803055 96803100 -62796683 + (TCC)n Simple_repeat Simple_repeat 3 46 0 6 1323 608 350 100 31 chr3 96803249 96803492 -62796291 + L2a LINE L2 2553 2804 -615 6 1323 961 135 0 20 chr3 96803492 96803643 -62796140 - B1_Mur2 SINE Alu -1 148 1 6 1323 608 311 239 29 chr3 96803643 96804054 -62795729 + L2a LINE L2 2805 3319 -107 6 1323 234 313 40 73 chr3 96804168 96804292 -62795491 - MIR SINE MIR -107 155 36 6 1323 2097 197 42 22 chr3 96805954 96806359 -62793424 + MTD LTR MaLR 7 419 0 6 1323 1134 124 113 47 chr3 96806544 96806756 -62793027 + URR1A DNA MER1_type 1 226 0 6 1323 378 61 0 0 chr3 96807229 96807278 -62792505 + (CA)n Simple_repeat Simple_repeat 2 50 0 6 1323 233 376 17 8 chr3 96807387 96807505 -62792278 + MIRb SINE MIR 35 153 -115 6 1323 511 291 141 21 chr3 96807772 96808056 -62791727 - L2a LINE L2 0 3426 3109 6 1323 643 226 0 66 chr3 96808251 96808417 -62791366 - RSINE1 SINE B4 -7 158 4 6 1323 329 256 13 0 chr3 96808513 96808591 -62791192 - PB1D10 SINE Alu -7 110 32 6 1323 489 136 111 0 chr3 96808981 96809062 -62790721 + B3 SINE B2 18 107 -109 6 1323 1178 193 55 0 chr3 96809405 96809607 -62790176 + B3 SINE B2 3 215 -1 6 1323 402 21 0 0 chr3 96809729 96809776 -62790007 + (TG)n Simple_repeat Simple_repeat 2 48 0 6 1323 707 231 20 0 chr3 96809785 96809932 -62789851 - RSINE1 SINE B4 -14 151 2 6 1323 353 273 30 21 chr3 96810030 96810151 -62789632 + MLT1A1 LTR MaLR 225 396 -12 6 1323 649 261 31 37 chr3 96810417 96810608 -62789175 - B3A SINE B2 -6 192 3 6 1323 180 0 0 0 chr3 96810715 96810735 -62789048 + (A)n Simple_repeat Simple_repeat 1 20 0 6 1323 245 354 31 0 chr3 96812153 96812249 -62787534 - MIRm SINE MIR -135 141 43 6 1323 309 276 42 118 chr3 96812511 96812530 -62787253 + MT2B LTR ERVL 150 157 -444 6 1323 834 183 49 0 chr3 96812530 96812672 -62787111 + B1_Mur1 SINE Alu 1 149 0 6 1323 184 276 103 24 chr3 96812868 96812994 -62786789 + MIRb SINE MIR 2 137 -131 6 1323 325 297 78 8 chr3 96813535 96813643 -62786140 + HAL1b LINE L1 1858 1969 -40 6 1323 257 253 13 26 chr3 96813643 96813720 -62786063 - ID4_ SINE ID -4 79 4 6 1323 325 297 78 8 chr3 96813720 96813740 -62786043 + HAL1b LINE L1 1970 1994 -15 6 1323 300 305 32 0 chr3 96813876 96813971 -62785812 + B1F SINE Alu 3 100 -49 6 1323 207 0 0 0 chr3 96813974 96813997 -62785786 + (CAAA)n Simple_repeat Simple_repeat 1 23 0 6 1323 211 265 132 0 chr3 96814006 96814074 -62785709 + ID4 SINE ID 1 77 -6 6 1323 255 288 0 15 chr3 96814845 96814912 -62784871 + CT-rich Low_complexity Low_complexity 3 68 0 6 1323 225 308 19 0 chr3 96814921 96814973 -62784810 - B1F1 SINE Alu -94 55 3 6 1323 23 54 0 0 chr3 96814980 96815017 -62784766 + AT_rich Low_complexity Low_complexity 1 37 0 6 1323 200 125 83 0 chr3 96815428 96815476 -62784307 + (GGGTG)n Simple_repeat Simple_repeat 5 56 0 6 1323 1028 212 204 52 chr3 96816207 96816516 -62783267 - ORR1D2 LTR MaLR -13 357 2 6 1323 474 278 12 56 chr3 96817860 96818020 -62781763 - LTR79 LTR ERVL -15 512 360 6 1323 281 280 186 50 chr3 96818926 96819125 -62780658 - MIRb SINE MIR -14 254 29 6 1323 3085 132 97 24 chr3 96819588 96820126 -62779657 + RMER4B LTR ERVK 1 577 -8 6 1323 405 253 82 11 chr3 96820408 96820522 -62779261 - B1F1 SINE Alu -41 108 1 6 1323 265 291 54 75 chr3 96820439 96820532 -62779251 - MT2B2 LTR ERVL -343 241 151 6 1323 259 327 59 0 chr3 96820876 96820977 -62778806 + MIR SINE MIR 156 262 0 6 1323 437 252 0 34 chr3 96821221 96821340 -62778443 - MTD LTR MaLR -306 113 3 6 1323 2238 45 185 0 chr3 96821927 96822219 -62777564 - ORR1A1 LTR MaLR 0 346 1 6 1323 249 325 84 65 chr3 96823372 96823586 -62776197 + L2c LINE L2 3019 3236 -151 6 1323 533 304 119 5 chr3 96823610 96823812 -62775971 + MIR SINE MIR 17 241 -21 7 1323 1738 39 0 0 chr3 96824146 96824354 -62775429 - L1Md_F3 LINE L1 -14 6570 6363 7 1323 472 280 24 16 chr3 96824608 96824735 -62775048 + B1F1 SINE Alu 1 128 -21 7 1323 986 261 53 18 chr3 96826260 96826465 -62773318 - B4A SINE B4 -1 291 77 7 1323 755 97 0 9 chr3 96826465 96826580 -62773203 + (TTCC)n Simple_repeat Simple_repeat 4 117 0 7 1323 986 261 53 18 chr3 96826580 96826655 -62773128 - B4A SINE B4 -216 76 2 7 1323 375 348 0 49 chr3 96826989 96827152 -62772631 - MamRep1161 DNA TcMar -802 155 1 7 1323 882 256 50 5 chr3 96828407 96828627 -62771156 - B4A SINE B4 -61 231 2 7 1323 251 308 87 55 chr3 96829786 96829913 -62769870 - MIRb SINE MIR -88 180 50 7 1323 262 304 50 12 chr3 96830132 96830212 -62769571 - ID_B1 SINE B4 -57 167 85 7 1323 1495 218 99 16 chr3 96830819 96831202 -62768581 - MTD LTR MaLR -4 415 1 7 1323 319 302 113 14 chr3 96831304 96831445 -62768338 + HAL1-3A_ME LINE L1 2284 2438 -420 7 1323 245 51 0 25 chr3 96831956 96831996 -62767787 + (TTTG)n Simple_repeat Simple_repeat 1 39 0 7 1323 1345 79 17 6 chr3 96832389 96832567 -62767216 + B2_Mm2 SINE B2 2 181 -14 7 1323 347 74 93 0 chr3 96832587 96832641 -62767142 + B2_Mm1a SINE B2 127 185 -8 7 1323 241 278 121 11 chr3 96832937 96833028 -62766755 + MIRc SINE MIR 90 190 -78 7 1323 863 239 11 0 chr3 96833292 96833476 -62766307 + B3A SINE B2 2 187 -11 7 1323 1663 32 0 0 chr3 96833507 96833696 -62766087 - B2_Mm1a SINE B2 -3 190 2 7 1323 558 265 71 18 chr3 96834755 96834924 -62764859 - MIRb SINE MIR -36 232 55 7 1323 181 231 14 110 chr3 96835075 96835148 -62764635 - L2b LINE L2 -38 3337 3272 7 1323 222 365 0 12 chr3 96836202 96836288 -62763495 + G-rich Low_complexity Low_complexity 1 85 0 7 1323 277 288 197 40 chr3 96837082 96837234 -62762549 + MIRc SINE MIR 18 193 -75 7 1323 225 255 0 0 chr3 96838835 96838882 -62760901 + MIRc SINE MIR 83 129 -139 7 1323 230 210 45 61 chr3 96838938 96839004 -62760779 - tRNA-Ala-GCY_ tRNA tRNA -9 66 2 7 1323 181 336 93 28 chr3 96839338 96839445 -62760338 - MIR3 SINE MIR -35 173 60 7 1323 196 269 39 0 chr3 96839995 96840047 -62759736 - MIR SINE MIR -14 248 195 7 1323 325 328 55 16 chr3 96840597 96840724 -62759059 + MIRb SINE MIR 27 158 -110 7 1323 192 77 0 0 chr3 96841848 96841874 -62757909 + (TG)n Simple_repeat Simple_repeat 1 26 0 7 1323 181 314 104 83 chr3 96843344 96843730 -62756053 + L2c LINE L2 2994 3387 0 7 1323 927 149 126 47 chr3 96843970 96844160 -62755623 + URR1A DNA MER1_type 22 226 0 7 1323 365 280 157 47 chr3 96844013 96844185 -62755598 - CYRA11_Mm Unknown Y-chromosome -279 338 148 7 1323 584 312 39 93 chr3 96844483 96844600 -62755183 - MTEb LTR MaLR -21 358 238 7 1323 1316 221 157 14 chr3 96844600 96844963 -62754820 - MTD LTR MaLR -4 415 1 7 1323 584 312 39 93 chr3 96844963 96845124 -62754659 - MTEb LTR MaLR -142 237 95 7 1323 467 60 15 0 chr3 96845137 96845204 -62754579 + (TCTA)n Simple_repeat Simple_repeat 3 70 0 7 1323 387 41 0 0 chr3 96845236 96845285 -62754498 + (TG)n Simple_repeat Simple_repeat 2 50 0 7 1323 743 324 0 0 chr3 96845288 96845470 -62754313 - B4A SINE B4 -27 265 84 7 1323 22 35 0 0 chr3 96845471 96845500 -62754283 + AT_rich Low_complexity Low_complexity 1 29 0 7 1323 315 0 0 0 chr3 96845508 96845543 -62754240 + (TG)n Simple_repeat Simple_repeat 1 35 0 7 1323 356 198 48 24 chr3 96845543 96845617 -62754166 - B4A SINE B4 -213 79 2 7 1323 423 250 8 122 chr3 96845617 96845738 -62754045 - MTEb LTR MaLR -272 107 1 7 1323 291 216 33 87 chr3 96846752 96846848 -62752935 - ORR1E LTR MaLR -282 92 9 7 1323 2437 226 31 24 chr3 96846857 96847402 -62752381 - RMER15 LTR ERVL 0 575 27 7 1323 248 206 29 73 chr3 96847417 96847485 -62752298 - RMER15 LTR ERVL -510 65 1 7 1323 234 330 18 0 chr3 96848911 96849020 -62750763 + CT-rich Low_complexity Low_complexity 3 113 0 7 1323 473 250 189 30 chr3 96849299 96849468 -62750315 - B3A SINE B2 0 198 3 7 1323 647 233 112 64 chr3 96849920 96850091 -62749692 + B3A SINE B2 1 181 -17 7 1323 270 0 0 0 chr3 96850091 96850121 -62749662 + (CA)n Simple_repeat Simple_repeat 1 30 0 7 1323 647 233 112 64 chr3 96850121 96850137 -62749646 + B3A SINE B2 182 197 -1 7 1323 951 254 33 19 chr3 96850582 96850795 -62748988 - B3 SINE B2 0 216 1 7 1323 1648 176 120 45 chr3 96851131 96851325 -62748458 - ORR1C2 LTR MaLR 0 384 173 7 1323 717 12 0 0 chr3 96851325 96851407 -62748376 + (GGAGA)n Simple_repeat Simple_repeat 4 85 0 7 1323 1648 176 120 45 chr3 96851407 96851569 -62748214 - ORR1C2 LTR MaLR -212 172 2 7 1323 202 297 241 6 chr3 96851991 96852157 -62747626 - MIRc SINE MIR -53 215 11 7 1323 181 259 0 36 chr3 96852151 96852207 -62747576 - MER5A DNA MER1_type -23 166 113 7 1323 1141 185 29 5 chr3 96852354 96852560 -62747223 + B3 SINE B2 2 212 -4 7 1323 531 112 0 0 chr3 96852576 96852656 -62747127 + (GA)n Simple_repeat Simple_repeat 2 81 0 7 1323 441 0 0 0 chr3 96852654 96852703 -62747080 + (GGAA)n Simple_repeat Simple_repeat 4 52 0 7 1323 989 229 49 0 chr3 96852793 96852998 -62746785 + B3 SINE B2 1 215 -1 7 1323 2889 60 21 3 chr3 96853423 96853806 -62745977 - L1_Mus3 LINE L1 0 6638 6249 7 1323 261 265 83 117 chr3 96853922 96854016 -62745767 - RLTR40 LTR ERVK -148 669 504 7 1323 264 283 16 131 chr3 96854016 96854138 -62745645 - B3 SINE B2 -15 201 94 7 1323 261 265 83 117 chr3 96854138 96854187 -62745596 - RLTR40 LTR ERVK -148 503 414 7 1323 490 246 29 36 chr3 96854253 96854392 -62745391 - ID_B1 SINE B4 -1 223 86 7 1323 198 0 0 0 chr3 96856002 96856024 -62743759 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 7 1323 381 22 0 0 chr3 96856949 96856995 -62742788 + (TG)n Simple_repeat Simple_repeat 1 46 0 7 1323 246 81 0 0 chr3 96857456 96857493 -62742290 + (T)n Simple_repeat Simple_repeat 1 37 0 7 1323 180 300 160 43 chr3 96857590 96857778 -62742005 + MIRb SINE MIR 2 211 -57 7 1323 529 244 8 25 chr3 96857970 96858088 -62741695 + B4A SINE B4 9 124 -168 7 1323 217 145 52 13 chr3 96858307 96858384 -62741399 + (CA)n Simple_repeat Simple_repeat 2 81 0 7 1323 320 257 26 9 chr3 96858407 96858521 -62741262 + (CA)n Simple_repeat Simple_repeat 2 117 0 7 1323 1257 225 20 47 chr3 96858629 96858927 -62740856 + B4 SINE B4 2 291 -1 7 1323 7230 61 0 0 chr3 96859121 96860040 -62739743 + L1_Mus1 LINE L1 5649 6567 0 7 1323 648 257 125 6 chr3 96860573 96860749 -62739034 + B3A SINE B2 2 198 0 7 1323 27 29 0 0 chr3 96860749 96860783 -62739000 + AT_rich Low_complexity Low_complexity 1 34 0 7 1323 206 23 0 85 chr3 96860879 96860926 -62738857 + (GTTTG)n Simple_repeat Simple_repeat 2 44 0 7 1323 599 225 31 8 chr3 96861302 96861432 -62738351 - ID_B1 SINE B4 -9 215 83 7 1323 216 359 133 5 chr3 96861433 96861643 -62738140 - L2a LINE L2 -54 3372 3136 7 1324 332 312 101 7 chr3 96862982 96863121 -62736662 - MIRb SINE MIR -2 266 115 7 1324 28 29 0 0 chr3 96863378 96863413 -62736370 + AT_rich Low_complexity Low_complexity 1 35 0 7 1324 621 129 33 41 chr3 96864036 96864407 -62735376 + (CACAC)n Simple_repeat Simple_repeat 1 367 0 7 1324 213 269 19 131 chr3 96864773 96864880 -62734903 - L2c LINE L2 0 3387 3293 7 1324 790 223 40 6 chr3 96865754 96865930 -62733853 - B3A SINE B2 -16 182 1 7 1324 213 39 0 0 chr3 96866409 96866435 -62733348 + (TG)n Simple_repeat Simple_repeat 1 26 0 7 1324 555 102 0 0 chr3 96866435 96866523 -62733260 + (GA)n Simple_repeat Simple_repeat 2 89 0 7 1324 342 134 0 0 chr3 96866522 96866589 -62733194 + (TG)n Simple_repeat Simple_repeat 1 67 0 7 1324 460 228 110 68 chr3 96866627 96866773 -62733010 - RSINE1 SINE B4 0 165 14 7 1324 1086 105 94 0 chr3 96867832 96868003 -62731780 - B2_Mm1t SINE B2 -5 188 2 7 1324 572 291 68 18 chr3 96868949 96869275 -62730508 + L1MA4 LINE L1 4975 5316 -827 7 1324 1344 230 57 7 chr3 96869287 96869562 -62730221 + MT2A LTR ERVL 5 294 -239 7 1324 1120 171 105 53 chr3 96869562 96869809 -62729974 - RMER19C LTR ERVK -1 610 351 7 1324 207 161 0 0 chr3 96869884 96869915 -62729868 + polypurine Low_complexity Low_complexity 3 33 0 7 1324 1227 180 156 33 chr3 96870105 96870380 -62729403 - RMER19B LTR ERVK -291 611 303 7 1324 1002 206 77 20 chr3 96870377 96870561 -62729222 + MT2A LTR ERVL 272 458 -75 7 1324 282 106 0 0 chr3 96870561 96870608 -62729175 + (CA)n Simple_repeat Simple_repeat 2 48 0 7 1324 1002 206 77 20 chr3 96870608 96870671 -62729112 + MT2A LTR ERVL 459 532 -1 7 1324 1063 300 33 18 chr3 96870671 96871126 -62728657 + L1MA4 LINE L1 5467 5928 -372 7 1324 1128 193 20 0 chr3 96871309 96871506 -62728277 - B3 SINE B2 -15 201 1 7 1324 284 347 102 0 chr3 96871518 96871665 -62728118 - ERVL-E-int LTR ERVL -4151 1516 1355 7 1324 353 327 76 9 chr3 96871714 96871924 -62727859 + ERVL-E-int LTR ERVL 3600 3823 -1844 7 1324 325 337 69 35 chr3 96872142 96872459 -62727324 + ERVL-E-int LTR ERVL 4154 4481 -1004 7 1324 251 333 12 23 chr3 96872499 96872585 -62727198 - MLT1J-int LTR MaLR -811 576 492 7 1324 640 209 39 39 chr3 96872628 96872653 -62727130 - B2_Mm2 SINE B2 -16 179 153 7 1324 396 0 0 0 chr3 96872653 96872697 -62727086 + (TG)n Simple_repeat Simple_repeat 2 45 0 7 1324 713 209 39 39 chr3 96872697 96872850 -62726933 - B3A SINE B2 -42 156 1 7 1324 210 325 34 122 chr3 96873015 96873162 -62726621 + L2a LINE L2 3291 3424 -2 7 1324 901 240 83 0 chr3 96875093 96875297 -62724486 + ID_B1 SINE B4 4 224 0 7 1324 621 267 209 16 chr3 96875383 96875699 -62724084 + MTEa LTR MaLR 3 379 0 7 1324 2444 145 2 31 chr3 96876716 96877135 -62722648 + MTB_Mm LTR MaLR 1 407 0 7 1324 265 279 25 0 chr3 96877748 96877827 -62721956 - ID4 SINE ID -1 82 2 7 1324 209 318 116 18 chr3 96877830 96877942 -62721841 + MIRc SINE MIR 128 250 -18 7 1324 691 294 13 25 chr3 96878629 96878786 -62720997 + B3A SINE B2 1 155 -43 7 1324 2170 122 6 0 chr3 96878786 96879105 -62720678 + ORR1A4 LTR MaLR 1 321 -8 7 1324 389 315 53 47 chr3 96879259 96879409 -62720374 - MIRb SINE MIR -39 229 79 8 1324 228 135 0 0 chr3 96881378 96881415 -62718368 + (TG)n Simple_repeat Simple_repeat 2 38 0 8 1324 561 262 58 5 chr3 96881444 96881632 -62718151 - Lx9 LINE L1 -173 7471 7274 8 1324 444 258 57 110 chr3 96882204 96882413 -62717370 + B3A SINE B2 1 198 0 8 1324 3125 131 22 39 chr3 96882562 96883095 -62716688 + RLTR28 LTR ERVL 1 524 0 8 1324 417 208 28 0 chr3 96883389 96883461 -62716322 - B3 SINE B2 -57 159 86 8 1324 879 86 34 17 chr3 96883490 96883667 -62716116 + (TCTCC)n Simple_repeat Simple_repeat 1 180 0 8 1324 430 204 19 0 chr3 96883672 96883780 -62716003 + C-rich Low_complexity Low_complexity 4 113 0 8 1324 240 370 40 0 chr3 96883867 96883967 -62715816 + Tigger5 DNA MER2_type 45 148 -2258 8 1324 744 360 31 11 chr3 96884167 96884435 -62715348 - B4A SINE B4 0 292 17 8 1324 396 0 0 0 chr3 96884435 96884479 -62715304 + (TC)n Simple_repeat Simple_repeat 2 45 0 8 1324 744 360 31 11 chr3 96884479 96884496 -62715287 - B4A SINE B4 -276 16 1 8 1324 276 265 96 19 chr3 96885173 96885277 -62714506 + L1MA9 LINE L1 5650 5761 -551 8 1324 1656 234 63 5 chr3 96885292 96885675 -62714108 - MTD LTR MaLR -14 405 1 8 1324 332 22 0 22 chr3 96885700 96885746 -62714037 + (TG)n Simple_repeat Simple_repeat 1 45 0 8 1324 468 314 73 43 chr3 96885762 96886065 -62713718 + L1MA9 LINE L1 5779 6090 -222 8 1324 540 236 32 8 chr3 96886201 96886325 -62713458 - B1F SINE Alu 0 149 23 8 1324 362 319 44 5 chr3 96886442 96886556 -62713227 + PB1D10 SINE Alu 3 122 -27 8 1324 180 111 0 0 chr3 96886557 96886584 -62713199 + (CAA)n Simple_repeat Simple_repeat 1 27 0 8 1324 668 207 93 75 chr3 96887124 96887338 -62712445 + Lx5 LINE L1 6806 7023 -27 8 1324 404 19 0 19 chr3 96888007 96888061 -62711722 + (CA)n Simple_repeat Simple_repeat 1 53 0 8 1324 283 215 100 12 chr3 96888061 96888141 -62711642 - MIR SINE MIR -79 183 97 8 1324 1279 152 71 0 chr3 96888157 96888367 -62711416 - URR1A DNA MER1_type 0 226 2 8 1324 1100 171 37 130 chr3 96888467 96888822 -62710961 + RLTRETN_Mm LTR ERVK 1 322 0 8 1324 7533 110 18 87 chr3 96888824 96889877 -62709906 + MMETn-int LTR ERVK 3 992 -3852 8 1324 1628 41 0 5 chr3 96889877 96890071 -62709712 + B2_Mm1t SINE B2 1 193 0 8 1324 7533 110 18 87 chr3 96890071 96890386 -62709397 + MMETn-int LTR ERVK 993 1276 -3568 8 1324 3766 61 90 0 chr3 96890386 96890862 -62708921 + MURVY-LTR LTR ERV1 1 519 0 8 1324 11685 289 43 54 chr3 96890862 96896357 -62703426 + RLTR6-int LTR ERV1 3 5652 -2126 8 1324 306 71 0 0 chr3 96896586 96896628 -62703155 + RLTR6-int LTR ERV1 7737 7778 0 8 1324 3985 53 57 0 chr3 96896628 96897119 -62702664 + MURVY-LTR LTR ERV1 1 519 0 8 1324 350 161 0 0 chr3 96897120 96897176 -62702607 + MMETn-int LTR ERVK 2189 2244 -5162 8 1324 7779 174 75 93 chr3 96897169 96900297 -62699486 + MMETn-int LTR ERVK 1737 4453 -391 8 1324 327 254 324 38 chr3 96900309 96900624 -62699159 + RLTR13D6 LTR ERVK 127 531 -371 8 1324 476 113 23 70 chr3 96900624 96900710 -62699073 + MMETn-int LTR ERVK 7324 7405 -1 8 1324 1014 189 44 105 chr3 96900710 96901003 -62698780 + RLTRETN_Mm LTR ERVK 1 278 -44 8 1324 3527 25 2 0 chr3 96901003 96901398 -62698385 + MTA_Mm LTR MaLR 1 396 0 8 1324 1014 189 44 105 chr3 96901398 96901447 -62698336 + RLTRETN_Mm LTR ERVK 279 322 0 8 1324 445 200 171 9 chr3 96901972 96902083 -62697700 - B1_Mur2 SINE Alu -20 129 1 8 1324 624 281 119 0 chr3 96902127 96902312 -62697471 - B3 SINE B2 -9 207 1 8 1324 1245 161 131 26 chr3 96902519 96902832 -62696951 + ORR1B1 LTR MaLR 41 386 -8 8 1324 307 259 0 12 chr3 96902838 96902920 -62696863 + (TG)n Simple_repeat Simple_repeat 2 82 0 8 1324 261 0 0 0 chr3 96903046 96903075 -62696708 + (TAA)n Simple_repeat Simple_repeat 1 29 0 8 1324 279 0 0 0 chr3 96903778 96903809 -62695974 + (GGAA)n Simple_repeat Simple_repeat 3 33 0 8 1324 583 190 0 22 chr3 96904341 96904524 -62695259 + (TG)n Simple_repeat Simple_repeat 2 180 0 8 1324 474 225 0 0 chr3 96904585 96904758 -62695025 + (TG)n Simple_repeat Simple_repeat 2 174 0 8 1324 614 306 143 15 chr3 96905226 96905568 -62694215 + MLT1F LTR MaLR 163 548 0 8 1324 771 154 15 7 chr3 96905691 96905828 -62693955 + B1_Mus2 SINE Alu 4 141 -6 8 1324 189 0 0 0 chr3 96906015 96906036 -62693747 + (GGGA)n Simple_repeat Simple_repeat 1 21 0 8 1324 596 271 115 11 chr3 96906722 96906983 -62692800 - RMER15 LTR ERVL -16 559 272 8 1324 2435 99 70 35 chr3 96907626 96908023 -62691760 - IAPLTR2a LTR ERVK 0 411 1 8 1324 348 99 42 0 chr3 96908384 96908455 -62691328 + (TAGA)n Simple_repeat Simple_repeat 4 77 0 8 1324 1173 102 21 21 chr3 96909622 96909813 -62689970 + B2_Mm2 SINE B2 2 192 -3 8 1324 1530 166 89 21 chr3 96910274 96910595 -62689188 + ORR1D1 LTR MaLR 2 344 -30 8 1324 746 149 279 10 chr3 96910595 96910799 -62688984 - RLTR22_Mur LTR ERVK 0 1848 1590 8 1324 4880 147 34 27 chr3 96910975 96911945 -62687838 - RLTR22_Mur LTR ERVK -871 977 1 8 1324 1528 128 116 4 chr3 96912176 96912451 -62687332 - ORR1B1 LTR MaLR 0 394 89 8 1324 7503 62 2 4 chr3 96912451 96913407 -62686376 + L1Md_F2 LINE L1 4633 5586 -297 8 1324 7703 59 18 5 chr3 96913408 96914375 -62685408 + L1Md_F2 LINE L1 5588 6566 -16 8 1324 664 158 17 2 chr3 96914376 96914517 -62685266 - ORR1B1 LTR MaLR -274 120 1 8 1324 477 0 0 0 chr3 96916099 96916152 -62683631 + (TC)n Simple_repeat Simple_repeat 2 54 0 8 1324 255 308 104 77 chr3 96916152 96916328 -62683455 - MIRb SINE MIR -26 242 60 8 1324 960 310 46 3 chr3 96916489 96916813 -62682970 + MTE2b LTR MaLR 1 338 -41 8 1324 1067 299 61 25 chr3 96917236 96917481 -62682302 + L1M4b LINE L1 3055 3254 -3749 8 1324 1320 112 0 21 chr3 96917481 96917673 -62682110 + B2_Mm2 SINE B2 3 190 -5 8 1324 1067 314 95 37 chr3 96917673 96918602 -62681181 + L1M4b LINE L1 3255 4259 -2744 8 1324 180 0 0 0 chr3 96918623 96918643 -62681140 + (TTTTA)n Simple_repeat Simple_repeat 4 23 0 8 1324 439 165 133 2 chr3 96918650 96918760 -62681023 - B1_Mur4 SINE Alu -18 132 1 8 1324 1083 117 0 0 chr3 96918774 96918945 -62680838 + (TTTC)n Simple_repeat Simple_repeat 2 172 0 8 1324 1211 56 0 0 chr3 96918945 96919089 -62680694 - B1_Mm SINE Alu -3 144 1 8 1324 584 304 101 44 chr3 96919092 96919478 -62680305 + L1M4b LINE L1 4276 4690 -2313 8 1324 735 216 7 0 chr3 96919478 96919617 -62680166 + B1_Mus2 SINE Alu 3 142 -5 8 1324 584 304 101 44 chr3 96919617 96919687 -62680096 + L1M4b LINE L1 4691 4757 -2246 8 1324 1212 282 84 115 chr3 96919682 96919780 -62680003 + L1M4b LINE L1 5062 5159 -1844 8 1324 3255 58 2 0 chr3 96919780 96920179 -62679604 - MTB LTR MaLR 0 400 1 8 1324 1212 282 84 115 chr3 96920179 96920582 -62679201 + L1M4b LINE L1 5160 5594 -1409 8 1324 594 0 0 0 chr3 96920582 96920648 -62679135 + (TC)n Simple_repeat Simple_repeat 2 67 0 8 1324 673 111 28 0 chr3 96920649 96920757 -62679026 - B1_Mus1 SINE Alu -7 141 31 8 1324 1212 286 85 116 chr3 96920757 96921628 -62678155 + L1M4b LINE L1 5551 6465 -275 8 1324 875 289 38 35 chr3 96923105 96923777 -62676006 + L1MB3 LINE L1 5087 5768 -415 8 1324 1882 139 16 64 chr3 96923790 96924167 -62675616 - ORR1B2 LTR MaLR -8 359 1 8 1324 682 280 87 18 chr3 96924167 96924528 -62675255 + L1MB3 LINE L1 5776 6167 -4 8 1324 861 281 13 50 chr3 96925095 96925398 -62674385 + B4A SINE B4 1 292 0 8 1324 218 81 27 0 chr3 96925402 96925439 -62674344 + (CA)n Simple_repeat Simple_repeat 1 38 0 8 1324 1174 75 0 0 chr3 96926641 96926788 -62672995 + B1_Mus2 SINE Alu 1 147 0 8 1324 577 191 99 25 chr3 96926790 96926972 -62672811 + L1MB7 LINE L1 5593 5786 -392 8 1324 1604 227 19 14 chr3 96926989 96927355 -62672428 + MTD LTR MaLR 52 419 0 8 1324 842 262 38 21 chr3 96927444 96927732 -62672051 + L1MB7 LINE L1 5862 6154 -30 8 1324 432 0 0 0 chr3 96928485 96928533 -62671250 + (GA)n Simple_repeat Simple_repeat 1 48 0 8 1324 328 266 28 0 chr3 96928549 96928658 -62671125 + LTR78 LTR ERV1 1008 1119 -185 8 1324 373 253 3 1 chr3 96928778 96928873 -62670910 + B3 SINE B2 5 100 -98 8 1324 1202 266 44 69 chr3 96928921 96929446 -62670337 - L1MA8 LINE L1 -187 6806 6295 8 1324 912 269 45 4 chr3 96930031 96930296 -62669487 - L1MA8 LINE L1 -680 6313 6038 8 1324 568 287 100 44 chr3 96930297 96930567 -62669216 + B4A SINE B4 4 288 -4 8 1324 3480 272 100 118 chr3 96930666 96932049 -62667734 - L1MA8 LINE L1 -1199 5646 4272 8 1324 1228 88 48 27 chr3 96932049 96932235 -62667548 - B2_Mm2 SINE B2 -5 190 1 8 1324 3480 272 100 118 chr3 96932235 96932387 -62667396 - L1MA8 LINE L1 -2574 4271 4215 8 1324 212 0 36 0 chr3 96932394 96932422 -62667361 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 8 1324 1223 34 7 0 chr3 96932422 96932560 -62667223 - B1_Mm SINE Alu -7 140 2 8 1324 3480 272 100 118 chr3 96932560 96932891 -62666892 - L1MA8 LINE L1 -2631 4214 3843 8 1324 1225 55 0 0 chr3 96932891 96933037 -62666746 + B1_Mm SINE Alu 2 147 0 8 1324 3480 272 100 118 chr3 96933037 96933460 -62666323 - L1MA8 LINE L1 -3003 3842 3424 8 1324 1855 145 96 34 chr3 96933460 96933845 -62665938 + RLTR9E LTR ERVK 1 409 0 8 1324 3480 272 100 118 chr3 96933845 96934033 -62665750 - L1MA8 LINE L1 -3422 3423 3213 8 1324 244 80 80 0 chr3 96934034 96934084 -62665699 + (TCTG)n Simple_repeat Simple_repeat 1 54 0 8 1324 896 251 99 22 chr3 96934619 96935180 -62664603 - L1MA8 LINE L1 -3649 3196 2579 8 1324 216 0 0 0 chr3 96935335 96935359 -62664424 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 8 1324 844 170 0 7 chr3 96935359 96935501 -62664282 - B1_Mur4 SINE Alu -9 141 1 8 1324 238 221 122 32 chr3 96935516 96935618 -62664165 - L1MA8 LINE L1 -4574 2370 2270 8 1324 290 188 0 0 chr3 96935619 96935667 -62664116 - B3 SINE B2 -164 52 5 8 1324 706 235 69 35 chr3 96935694 96935897 -62663886 - Lx5 LINE L1 0 7050 6841 8 1324 413 348 21 43 chr3 96935906 96936047 -62663736 + B3A SINE B2 48 185 -13 8 1324 339 241 102 55 chr3 96936617 96936872 -62662911 - L1M3c LINE L1 -4610 2427 2161 8 1324 2965 95 12 2 chr3 96936878 96937288 -62662495 + Lx2 LINE L1 6227 6640 -357 8 1324 1399 104 26 26 chr3 96937288 96937516 -62662267 + Lx2 LINE L1 6770 6997 0 8 1324 1281 169 127 65 chr3 96937526 96937739 -62662044 + RLTR9E LTR ERVK 1 244 -165 8 1324 2663 107 123 27 chr3 96937739 96938179 -62661604 + RLTR45 LTR ERVK 1 482 0 8 1324 1281 169 127 65 chr3 96938179 96938350 -62661433 + RLTR9E LTR ERVK 245 408 -1 8 1324 7004 232 90 131 chr3 96938351 96943009 -62656774 + MMETn-int LTR ERVK 1 4468 -376 8 1324 657 165 248 5 chr3 96943009 96943304 -62656479 + RLTR13B1 LTR ERVK 157 537 -365 8 1324 512 53 25 62 chr3 96943304 96943384 -62656399 + ETnERV2-int LTR ERVK 7329 7405 -1 8 1324 1369 156 148 64 chr3 96943384 96943761 -62656022 + RLTR9E LTR ERVK 1 409 0 8 1324 318 202 56 0 chr3 96943794 96943883 -62655900 - L1M3c LINE L1 -4908 2129 2036 8 1324 1168 82 0 0 chr3 96943884 96944030 -62655753 + B1_Mm SINE Alu 2 147 0 8 1324 276 120 0 0 chr3 96944030 96944080 -62655703 + (A)n Simple_repeat Simple_repeat 1 50 0 8 1324 436 235 41 25 chr3 96944168 96944290 -62655493 - BC1_Mm scRNA scRNA -27 125 2 8 1324 510 221 0 0 chr3 96944485 96944580 -62655203 - U6 snRNA snRNA -11 96 2 8 1324 236 281 35 0 chr3 96944585 96944642 -62655141 - L1M3c LINE L1 -5125 1905 1847 8 1324 283 304 0 37 chr3 96944711 96944793 -62654990 - ID4 SINE ID 0 83 5 8 1324 2204 131 76 8 chr3 96944926 96945295 -62654488 - ORR1B1 LTR MaLR 0 394 1 8 1324 787 302 106 60 chr3 96945313 96945849 -62653934 + L1M3e LINE L1 3 563 -6467 8 1324 267 252 118 118 chr3 96945990 96946020 -62653763 + MLT1K LTR MaLR 13 39 -369 8 1324 1262 183 5 5 chr3 96946020 96946234 -62653549 + B3 SINE B2 2 215 -1 8 1324 267 252 118 118 chr3 96946234 96946347 -62653436 + MLT1K LTR MaLR 40 156 -252 8 1324 250 284 126 0 chr3 96946408 96946503 -62653280 + MLT1K LTR MaLR 291 397 -11 8 1324 583 325 61 96 chr3 96946614 96946781 -62653002 + MLT1A0 LTR MaLR 6 164 -201 8 1324 194 0 0 37 chr3 96946781 96946808 -62652975 + (CACCC)n Simple_repeat Simple_repeat 2 27 0 8 1324 583 325 61 96 chr3 96946808 96946967 -62652816 + MLT1A0 LTR MaLR 165 323 -42 8 1324 1391 76 37 11 chr3 96946967 96947154 -62652629 - B2_Mm2 SINE B2 -3 192 1 8 1324 583 290 67 137 chr3 96947154 96947218 -62652565 + MLT1A0 LTR MaLR 319 370 -4 8 1324 36406 67 2 13 chr3 96947259 96953433 -62646350 - L1Md_F2 LINE L1 0 6582 483 8 1324 562 156 194 54 chr3 96953503 96953632 -62646151 + B1_Mur2 SINE Alu 3 149 0 9 1324 299 283 32 21 chr3 96953800 96953894 -62645889 - ID4 SINE ID -51 101 7 9 1324 1865 229 19 53 chr3 96954078 96954549 -62645234 - RMER19C LTR ERVK -19 592 138 9 1324 342 0 0 0 chr3 96954697 96954735 -62645048 + (TG)n Simple_repeat Simple_repeat 1 38 0 9 1324 909 256 40 22 chr3 96954749 96955021 -62644762 - B4A SINE B4 -14 278 2 9 1324 297 342 71 52 chr3 96955600 96955810 -62643973 + MLT1K LTR MaLR 379 592 -3 8 1324 571 260 19 32 chr3 96956162 96956317 -62643466 + MLT1A1 LTR MaLR 247 399 -9 9 1324 293 301 121 25 chr3 96956446 96956603 -62643180 + MIR SINE MIR 81 252 -10 9 1324 418 314 70 87 chr3 96956950 96957236 -62642547 - ORR1E LTR MaLR 0 359 79 9 1324 207 210 0 46 chr3 96957322 96957387 -62642396 + A-rich Low_complexity Low_complexity 5 66 0 9 1324 545 270 20 0 chr3 96957398 96957546 -62642237 + MER2 DNA MER2_type 103 253 -92 9 1324 1009 219 92 31 chr3 96957555 96957880 -62641903 - RLTR15 LTR ERVK -14 345 1 9 1324 482 164 191 0 chr3 96958696 96958806 -62640977 - B1_Mur1 SINE Alu 0 149 19 9 1324 297 289 72 72 chr3 96958742 96958895 -62640888 - MT2B LTR ERVL -361 240 88 9 1324 189 121 0 0 chr3 96959621 96959654 -62640129 + (TG)n Simple_repeat Simple_repeat 2 34 0 9 1324 410 154 0 13 chr3 96959829 96959848 -62639935 + polypyrimidine Low_complexity Low_complexity 61 79 0 9 1324 1382 50 6 0 chr3 96959848 96960027 -62639756 + (TTC)n Simple_repeat Simple_repeat 1 180 0 9 1324 410 154 0 13 chr3 96960027 96960086 -62639697 + polypyrimidine Low_complexity Low_complexity 2 60 0 9 1324 1120 57 0 0 chr3 96960087 96960227 -62639556 - B1_Mus1 SINE Alu 0 148 9 9 1324 270 300 0 26 chr3 96960127 96960281 -62639502 - ORR1E-int LTR MaLR -755 754 605 9 1324 1064 24 0 0 chr3 96960276 96960403 -62639380 - B1_Mm SINE Alu 0 147 21 9 1324 368 279 44 122 chr3 96960311 96960515 -62639268 - MT2B LTR ERVL -337 264 77 9 1324 243 0 0 0 chr3 96961355 96961382 -62638401 + (TC)n Simple_repeat Simple_repeat 2 28 0 9 1324 828 190 7 0 chr3 96961382 96961524 -62638259 - B1_Mur3 SINE Alu -5 144 2 9 1324 341 235 15 125 chr3 96961412 96961548 -62638235 - MT2B LTR ERVL -337 264 144 9 1324 246 62 0 0 chr3 96961744 96961776 -62638007 + (T)n Simple_repeat Simple_repeat 1 32 0 9 1324 634 0 0 0 chr3 96962007 96962079 -62637704 + tRNA-Glu-GAG_ tRNA tRNA 1 72 -3 9 1324 262 268 0 0 chr3 96962174 96962230 -62637553 - ID4 SINE ID -26 57 2 9 1324 298 247 20 79 chr3 96963508 96963609 -62636174 - MER5A1 DNA MER1_type -11 155 61 9 1324 180 0 0 0 chr3 96964680 96964700 -62635083 + (A)n Simple_repeat Simple_repeat 1 20 0 9 1324 325 267 123 0 chr3 96964950 96965096 -62634687 - B3A SINE B2 -33 165 2 9 1324 915 168 0 0 chr3 96965252 96965419 -62634364 + (TA)n Simple_repeat Simple_repeat 2 168 0 9 1324 354 245 142 38 chr3 96966016 96966061 -62633722 - MER5B DNA MER1_type -4 174 120 9 1324 703 233 53 34 chr3 96966061 96966270 -62633513 + B3 SINE B2 1 213 -3 9 1324 354 245 142 38 chr3 96966270 96966330 -62633453 - MER5B DNA MER1_type -59 119 58 9 1324 202 314 82 33 chr3 96966349 96966471 -62633312 - MER5A DNA MER1_type -21 168 41 9 1324 279 0 0 0 chr3 96966531 96966562 -62633221 + (TC)n Simple_repeat Simple_repeat 2 32 0 9 1324 267 217 0 0 chr3 96966562 96966622 -62633161 + (TATG)n Simple_repeat Simple_repeat 2 61 0 9 1324 837 226 14 28 chr3 96967076 96967294 -62632489 - B3 SINE B2 -1 215 1 9 1324 333 271 12 0 chr3 96967452 96967537 -62632246 + B3 SINE B2 1 86 -130 9 1324 200 350 32 25 chr3 96967754 96967879 -62631904 - L2c LINE L2 -35 3352 3240 9 1324 502 292 37 78 chr3 96968863 96969108 -62630675 - CYRA11_Mm Unknown Y-chromosome -168 449 215 9 1324 1169 134 89 5 chr3 96968931 96969134 -62630649 + URR1B DNA MER1_type 6 225 0 9 1324 367 270 95 98 chr3 96971093 96971358 -62628425 - MTEa LTR MaLR 0 379 98 9 1324 305 308 140 0 chr3 96972194 96972301 -62627482 + MIRb SINE MIR 103 224 -44 9 1324 901 255 25 0 chr3 96972804 96973004 -62626779 - B4 SINE B4 0 292 88 9 1324 381 221 111 37 chr3 96973073 96973181 -62626602 - PB1D7 SINE Alu 0 120 5 9 1324 315 305 19 0 chr3 96973288 96973393 -62626390 + PB1D10 SINE Alu 2 108 -9 9 1324 620 265 29 0 chr3 96973425 96973561 -62626222 + RSINE1 SINE B4 3 142 -23 9 1324 219 292 0 30 chr3 96973597 96973664 -62626119 + (CATA)n Simple_repeat Simple_repeat 1 65 0 9 1324 359 314 136 40 chr3 96973664 96973863 -62625920 - RMER12 LTR ERVK -334 988 771 9 1324 3592 162 30 44 chr3 96973953 96974731 -62625052 - RMER13B LTR ERVK -4 904 1 9 1324 727 164 301 6 chr3 96975221 96975387 -62624396 + B3 SINE B2 2 216 0 9 1324 225 279 85 61 chr3 96976020 96976184 -62623599 - MIRc SINE MIR -26 182 15 9 1324 466 282 86 20 chr3 96976488 96976640 -62623143 - MER58A DNA MER1_type -36 188 27 9 1324 241 291 127 0 chr3 96977353 96977432 -62622351 - RSINE1 SINE B4 -74 91 3 9 1324 243 0 0 0 chr3 96977492 96977519 -62622264 + (TA)n Simple_repeat Simple_repeat 2 28 0 9 1324 1512 52 5 25 chr3 96978045 96978242 -62621541 + B2_Mm1a SINE B2 1 193 0 9 1324 269 327 143 45 chr3 96978271 96978425 -62621358 - Charlie19a DNA Charlie -195 191 23 9 1324 1441 92 0 35 chr3 96978702 96978904 -62620879 - B2_Mm2 SINE B2 0 195 1 9 1324 971 213 28 28 chr3 96980481 96980694 -62619089 - B3 SINE B2 -3 213 1 9 1324 1415 255 121 10 chr3 96981044 96981566 -62618217 + L1MA4 LINE L1 3863 4442 -1698 9 1324 1441 232 104 23 chr3 96981570 96981954 -62617829 + MTD LTR MaLR 5 419 0 9 1324 1136 266 84 44 chr3 96981954 96982257 -62617526 + L1MA4 LINE L1 4441 4763 -1380 9 1324 1643 11 11 0 chr3 96982257 96982440 -62617343 + B2_Mm1a SINE B2 2 186 -7 9 1324 1136 272 102 48 chr3 96982440 96982900 -62616883 + L1MA4 LINE L1 4712 5217 -630 9 1324 1021 192 228 44 chr3 96982940 96983256 -62616527 + ORR1D1 LTR MaLR 1 374 0 9 1324 913 294 89 30 chr3 96983314 96983956 -62615827 + L1MA4 LINE L1 5385 6064 -239 9 1324 420 327 231 53 chr3 96984389 96985008 -62614775 + L2a LINE L2 1330 2132 -1287 9 1324 459 0 0 0 chr3 96985008 96985059 -62614724 + (TC)n Simple_repeat Simple_repeat 2 52 0 9 1324 566 130 213 0 chr3 96985059 96985167 -62614616 - B1_Mur4 SINE Alu -19 131 1 9 1324 420 327 231 53 chr3 96985167 96985784 -62613999 + L2a LINE L2 2133 2786 -633 9 1324 302 250 60 0 chr3 96985920 96986020 -62613763 - L1MA7 LINE L1 -1 6290 6185 9 1324 749 312 120 6 chr3 96986114 96986430 -62613353 + MLT1A1 LTR MaLR 39 390 -18 9 1324 257 214 53 53 chr3 96986452 96986546 -62613237 - L1MA7 LINE L1 -194 6097 6004 9 1324 701 278 101 12 chr3 96986859 96987117 -62612666 + MLT1B LTR MaLR 96 376 -14 9 1324 205 296 100 20 chr3 96987172 96987272 -62612511 + L2a LINE L2 3282 3389 -37 9 1324 629 224 40 119 chr3 96987499 96987676 -62612107 - RSINE1 SINE B4 -2 163 1 9 1324 196 352 28 9 chr3 96988302 96988408 -62611375 + MIRc SINE MIR 58 165 -103 9 1324 296 299 26 0 chr3 96989674 96989751 -62610032 + ID4_ SINE ID 1 79 -4 9 1324 695 256 122 4 chr3 96991421 96991676 -62608107 + Lx9 LINE L1 7360 7644 0 9 1324 196 229 0 0 chr3 96991774 96991809 -62607974 + MIR SINE MIR 15 49 -213 9 1324 525 312 70 5 chr3 96991903 96992090 -62607693 + MIR SINE MIR 64 262 0 9 1324 403 317 28 7 chr3 96992776 96992919 -62606864 + L3 LINE CR1 4209 4354 -135 9 1325 486 0 0 0 chr3 96993806 96993860 -62605923 + (TTA)n Simple_repeat Simple_repeat 1 54 0 9 1325 3499 71 0 7 chr3 96994106 96994562 -62605221 + L1Md_F2 LINE L1 6130 6582 0 9 1325 807 156 0 0 chr3 96994629 96994808 -62604975 + (TG)n Simple_repeat Simple_repeat 2 180 0 9 1325 1107 134 0 0 chr3 96995359 96995538 -62604245 + (CA)n Simple_repeat Simple_repeat 2 180 0 9 1325 426 274 32 0 chr3 96996162 96996257 -62603526 + PB1D10 SINE Alu 12 109 -8 9 1325 1559 205 64 78 chr3 96996340 96996763 -62603020 - MTD LTR MaLR -2 417 1 9 1325 761 230 44 49 chr3 96997415 96997598 -62602185 + B3A SINE B2 1 182 -16 9 1325 281 200 24 24 chr3 96997599 96997681 -62602102 + (CAGAGA)n Simple_repeat Simple_repeat 3 84 0 9 1325 1511 48 32 0 chr3 96997882 96998068 -62601715 + B2_Mm2 SINE B2 3 194 -1 9 1325 773 250 99 20 chr3 96998074 96998376 -62601407 + L1MB3 LINE L1 5759 6084 -99 9 1325 587 149 39 10 chr3 96998376 96998478 -62601305 - MTB_Mm LTR MaLR 0 407 303 9 1325 4473 98 55 15 chr3 96998478 96999129 -62600654 - RLTR33 LTR ERVK 0 678 2 9 1325 1643 117 62 31 chr3 96999285 96999575 -62600208 - MTB_Mm LTR MaLR -100 307 9 9 1325 201 147 0 0 chr3 96999667 96999701 -62600082 + (T)n Simple_repeat Simple_repeat 1 34 0 9 1325 1923 119 34 97 chr3 97000200 97000582 -62599201 - ORR1B2 LTR MaLR -9 358 1 1 1325 230 269 140 33 chr3 97000706 97000856 -62598927 + L2 LINE L2 2525 2690 -729 2 1325 354 279 17 51 chr3 97001291 97001408 -62598375 - L2b LINE L2 -5 3370 3258 3 1325 180 200 0 0 chr3 97001453 97001508 -62598275 + (TG)n Simple_repeat Simple_repeat 2 56 0 4 1325 556 338 0 7 chr3 97001597 97001737 -62598046 + RSINE1 SINE B4 8 146 -19 5 1325 2170 296 45 15 chr3 97001925 97002642 -62597141 + Lx8 LINE L1 6426 7163 -310 6 1325 23 54 0 0 chr3 97002642 97002679 -62597104 + GC_rich Low_complexity Low_complexity 1 37 0 7 1325 292 287 171 20 chr3 97002779 97002875 -62596908 + Lx8 LINE L1 7243 7351 -122 6 1325 579 29 0 0 chr3 97002875 97002944 -62596839 + (GAGAA)n Simple_repeat Simple_repeat 4 72 0 8 1325 292 287 171 20 chr3 97002944 97003046 -62596737 + Lx8 LINE L1 7352 7470 -3 6 1325 270 239 29 115 chr3 97004875 97004979 -62594804 + L2b LINE L2 3281 3375 0 9 1325 807 200 134 22 chr3 97007174 97007353 -62592430 + URR1B DNA MER1_type 27 225 0 1 1325 27 29 0 0 chr3 97008551 97008585 -62591198 + AT_rich Low_complexity Low_complexity 1 34 0 1 1325 1264 98 16 37 chr3 97014776 97014967 -62584816 - B2_Mm2 SINE B2 -7 188 2 1 1325 300 83 0 0 chr3 97018382 97018430 -62581353 + (T)n Simple_repeat Simple_repeat 1 48 0 1 1325 458 71 288 104 chr3 97022430 97022555 -62577228 - B2_Mm2 SINE B2 -1 194 47 1 1325 1308 91 17 0 chr3 97022608 97022783 -62577000 - B2_Mm1t SINE B2 -14 179 2 1 1325 228 35 0 0 chr3 97022880 97022909 -62576874 + (CA)n Simple_repeat Simple_repeat 2 30 0 1 1325 571 233 16 16 chr3 97023345 97023467 -62576316 - B1F2 SINE Alu -1 148 27 1 1325 22 0 0 0 chr3 97023777 97023799 -62575984 + AT_rich Low_complexity Low_complexity 1 22 0 1 1325 638 231 15 15 chr3 97023805 97023941 -62575842 + RSINE1 SINE B4 30 165 0 1 1325 303 28 0 0 chr3 97023966 97024002 -62575781 + (CAAAA)n Simple_repeat Simple_repeat 4 39 0 2 1325 387 278 71 65 chr3 97024214 97024368 -62575415 - RMER30 DNA MER1_type -47 155 1 2 1325 230 297 37 65 chr3 97024852 97024960 -62574823 + L2c LINE L2 3274 3378 -9 2 1325 606 222 7 29 chr3 97025020 97025159 -62574624 - B1_Mur2 SINE Alu 0 149 14 2 1325 289 300 20 60 chr3 97025025 97025174 -62574609 - ID_B1 SINE B4 -2 222 80 2 1325 1080 67 7 0 chr3 97025183 97025318 -62574465 - B1_Mus1 SINE Alu -12 136 1 2 1325 551 251 165 54 chr3 97025327 97025588 -62574195 + L1MA8 LINE L1 5710 5999 -292 2 1325 206 275 24 59 chr3 97026277 97026362 -62573421 - MIRm SINE MIR -18 258 177 2 1325 642 265 25 38 chr3 97026418 97026575 -62573208 - RSINE1 SINE B4 0 165 11 2 1325 33 90 0 0 chr3 97031045 97031134 -62568649 + GC_rich Low_complexity Low_complexity 1 89 0 2 1325 22 0 0 0 chr3 97031201 97031223 -62568560 + GC_rich Low_complexity Low_complexity 1 22 0 3 1325 213 39 0 0 chr3 97031255 97031281 -62568502 + (CGG)n Simple_repeat Simple_repeat 1 26 0 3 1325 247 143 0 97 chr3 97031327 97031389 -62568394 + C-rich Low_complexity Low_complexity 2 57 0 3 1325 33 76 0 28 chr3 97031413 97031521 -62568262 + GC_rich Low_complexity Low_complexity 1 105 0 3 1325 22 56 0 0 chr3 97031607 97031643 -62568140 + GC_rich Low_complexity Low_complexity 1 36 0 3 1325 2583 134 42 2 chr3 97033273 97033676 -62566107 - MTC LTR MaLR 0 421 3 3 1325 250 145 72 0 chr3 97033777 97033846 -62565937 + A-rich Low_complexity Low_complexity 2 75 0 3 1325 1184 119 5 89 chr3 97034530 97034743 -62565040 - B2_Mm2 SINE B2 0 195 1 3 1325 810 182 6 51 chr3 97034746 97034902 -62564881 - B1_Mur4 SINE Alu 0 150 2 3 1325 23 0 0 0 chr3 97035013 97035036 -62564747 + AT_rich Low_complexity Low_complexity 1 23 0 3 1325 1120 193 9 38 chr3 97035036 97035246 -62564537 - B3 SINE B2 -7 209 6 4 1325 1070 180 26 0 chr3 97036184 97036378 -62563405 - B3 SINE B2 -13 203 5 4 1325 243 339 0 0 chr3 97037859 97037921 -62561862 + MIRb SINE MIR 9 70 -198 4 1325 871 122 65 0 chr3 97037945 97038084 -62561699 + B1_Mur4 SINE Alu 3 150 0 4 1325 1292 20 0 0 chr3 97038294 97038440 -62561343 - B1_Mus2 SINE Alu 0 147 2 4 1325 222 361 70 35 chr3 97039214 97039386 -62560397 + MIR SINE MIR 85 262 0 4 1325 297 275 219 5 chr3 97040497 97040698 -62559085 - MIRb SINE MIR -8 260 17 4 1325 367 280 69 56 chr3 97040761 97040944 -62558839 + B3A SINE B2 3 181 -14 4 1325 189 0 0 0 chr3 97040955 97040976 -62558807 + (TTTTTG)n Simple_repeat Simple_repeat 4 24 0 4 1325 1095 75 13 13 chr3 97040987 97041136 -62558647 - B1_Mur4 SINE Alu -1 149 1 4 1325 329 338 62 35 chr3 97041303 97041447 -62558336 - MIRb SINE MIR -117 151 4 4 1325 234 331 78 8 chr3 97041617 97041745 -62558038 - MIR SINE MIR -8 254 118 5 1325 225 186 0 92 chr3 97042117 97042146 -62557637 - LTR33A LTR ERVL -321 199 173 5 1325 997 6 36 30 chr3 97042146 97042313 -62557470 + (TTCTC)n Simple_repeat Simple_repeat 5 172 0 5 1325 225 186 0 92 chr3 97042313 97042348 -62557435 - LTR33A LTR ERVL -348 172 141 5 1325 309 26 0 0 chr3 97042404 97042442 -62557341 + (TGG)n Simple_repeat Simple_repeat 1 38 0 5 1325 656 143 38 0 chr3 97042446 97042551 -62557232 + B1_Mus2 SINE Alu 22 130 -17 5 1325 635 280 40 5 chr3 97042572 97042773 -62557010 + L1M4 LINE L1 5595 5802 -382 5 1325 361 298 38 112 chr3 97043376 97043690 -62556093 + B4A SINE B4 2 292 0 5 1325 305 263 75 50 chr3 97043871 97043991 -62555792 + RCHARR1 DNA MER1_type 5 127 -847 5 1325 830 258 72 9 chr3 97044016 97044239 -62555544 + RCHARR1 DNA MER1_type 260 496 -478 5 1325 1366 73 11 0 chr3 97044239 97044417 -62555366 + B2_Mm1t SINE B2 1 180 -13 5 1325 275 54 0 26 chr3 97044448 97044486 -62555297 + B2_Mm2 SINE B2 47 83 -112 5 1325 28 0 0 0 chr3 97044490 97044518 -62555265 + AT_rich Low_complexity Low_complexity 1 28 0 6 1325 848 140 72 14 chr3 97044755 97044893 -62554890 - B1_Mus1 SINE Alu -2 146 1 6 1325 2374 175 38 4 chr3 97045152 97045605 -62554178 + RCHARR1 DNA MER1_type 503 970 -4 5 1325 652 196 122 0 chr3 97046152 97046397 -62553386 + Charlie4a DNA MER1_type 216 491 -17 6 1325 261 0 0 0 chr3 97046454 97046483 -62553300 + (A)n Simple_repeat Simple_repeat 1 29 0 6 1325 241 284 21 118 chr3 97046649 97046793 -62552990 - L2c LINE L2 -4 3383 3254 6 1325 185 352 15 88 chr3 97048136 97048273 -62551510 + MIRc SINE MIR 124 250 -18 6 1325 4474 8 2 12 chr3 97049073 97049571 -62550212 + MT2_Mm LTR ERVL 1 493 0 6 1325 41455 16 14 0 chr3 97049571 97054858 -62544925 + MERVL-int LTR ERVL 1 5360 -125 6 1325 364 191 46 35 chr3 97054858 97054945 -62544838 + ORR1A3-int LTR MaLR 553 640 -1323 6 1325 319 0 0 0 chr3 97054945 97054983 -62544800 + MERVL-int LTR ERVL 5448 5485 0 6 1325 4474 8 2 12 chr3 97054983 97055481 -62544302 + MT2_Mm LTR ERVL 1 493 0 6 1325 327 313 104 7 chr3 97056366 97056501 -62543282 + RSINE1 SINE B4 16 163 -2 6 1325 218 327 116 32 chr3 97056501 97056521 -62543262 + B3A SINE B2 15 182 -16 6 1325 444 296 40 75 chr3 97056764 97056965 -62542818 - ID_B1 SINE B4 -7 217 24 7 1325 21 36 0 0 chr3 97057551 97057579 -62542204 + AT_rich Low_complexity Low_complexity 1 28 0 7 1325 478 108 24 0 chr3 97058614 97058697 -62541086 + (TC)n Simple_repeat Simple_repeat 2 86 0 7 1325 465 19 0 0 chr3 97059343 97059397 -62540386 + (TCC)n Simple_repeat Simple_repeat 1 54 0 7 1325 464 165 44 0 chr3 97060897 97060988 -62538795 + PB1D9 SINE Alu 16 110 -10 7 1325 1598 242 118 19 chr3 97061171 97061639 -62538144 + MT2A LTR ERVL 20 533 0 7 1325 288 0 0 0 chr3 97061665 97061697 -62538086 + (TA)n Simple_repeat Simple_repeat 2 33 0 7 1325 973 136 14 0 chr3 97061872 97062019 -62537764 + B1_Mur3 SINE Alu 1 149 0 7 1325 76 51 0 0 chr3 97062195 97062313 -62537470 + AT_rich Low_complexity Low_complexity 1 118 0 7 1325 4261 124 77 87 chr3 97062694 97063593 -62536190 + RMER19B LTR ERVK 1 890 -12 7 1325 198 0 0 0 chr3 97063781 97063803 -62535980 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 8 1325 247 234 16 0 chr3 97064411 97064475 -62535308 + ID4 SINE ID 8 72 -11 8 1325 294 253 0 56 chr3 97064659 97064839 -62534944 + (TTATA)n Simple_repeat Simple_repeat 3 172 0 8 1325 294 253 0 56 chr3 97064851 97065031 -62534752 + (TTATA)n Simple_repeat Simple_repeat 3 172 0 8 1325 303 253 0 56 chr3 97065043 97065223 -62534560 + (TTATA)n Simple_repeat Simple_repeat 3 172 0 8 1325 261 0 0 0 chr3 97065339 97065368 -62534415 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 8 1325 1229 61 0 0 chr3 97065378 97065525 -62534258 + B1_Mus1 SINE Alu 2 148 0 8 1325 230 106 21 0 chr3 97065525 97065572 -62534211 + (TAAA)n Simple_repeat Simple_repeat 1 48 0 8 1325 407 350 84 70 chr3 97065643 97065913 -62533870 + MER99 DNA hAT? 1 270 -561 8 1325 1234 35 0 0 chr3 97065913 97066055 -62533728 + B1_Mm SINE Alu 1 142 -5 8 1325 209 57 0 28 chr3 97066061 97066097 -62533686 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 8 1325 407 350 84 70 chr3 97066097 97066261 -62533522 + MER99 DNA hAT? 277 447 -384 8 1325 967 193 14 42 chr3 97066280 97066496 -62533287 - B3 SINE B2 -5 211 2 8 1325 1682 26 0 0 chr3 97066521 97066710 -62533073 + B2_Mm1a SINE B2 1 189 -4 9 1325 207 195 24 0 chr3 97066818 97066859 -62532924 + CT-rich Low_complexity Low_complexity 3 44 0 9 1325 360 0 0 0 chr3 97066907 97066947 -62532836 + (CA)n Simple_repeat Simple_repeat 2 41 0 9 1325 300 351 21 0 chr3 97066991 97067085 -62532698 + PB1 SINE Alu 6 101 -26 9 1325 343 298 0 0 chr3 97067409 97067493 -62532290 + RSINE1 SINE B4 82 165 0 9 1325 450 0 0 0 chr3 97067519 97067569 -62532214 + (CA)n Simple_repeat Simple_repeat 2 51 0 9 1325 3133 52 34 0 chr3 97067574 97067961 -62531822 + MTB LTR MaLR 1 400 0 9 1325 225 265 0 0 chr3 97068828 97068877 -62530906 + RMER1B Other Other 529 577 -489 9 1325 426 277 59 18 chr3 97069085 97069254 -62530529 + MIRb SINE MIR 93 268 0 9 1325 897 157 7 7 chr3 97069295 97069443 -62530340 + B1_Mur4 SINE Alu 3 150 0 9 1325 224 252 93 75 chr3 97070532 97070639 -62529144 + MIR3 SINE MIR 9 117 -91 1 1325 39 68 0 0 chr3 97071773 97071847 -62527936 + AT_rich Low_complexity Low_complexity 1 74 0 1 1325 280 225 30 44 chr3 97073162 97073297 -62526486 + (CCTG)n Simple_repeat Simple_repeat 2 134 0 1 1325 1023 78 0 0 chr3 97074132 97074274 -62525509 + (GGA)n Simple_repeat Simple_repeat 1 142 0 1 1325 267 31 0 0 chr3 97074294 97074326 -62525457 + (GGGTG)n Simple_repeat Simple_repeat 1 32 0 1 1325 419 102 0 28 chr3 97074442 97074513 -62525270 + (GAAA)n Simple_repeat Simple_repeat 2 70 0 1 1325 21 0 0 0 chr3 97074537 97074558 -62525225 + AT_rich Low_complexity Low_complexity 1 21 0 1 1325 288 0 0 0 chr3 97074822 97074854 -62524929 + (CAA)n Simple_repeat Simple_repeat 2 33 0 1 1325 297 222 185 25 chr3 97075042 97075199 -62524584 + B3A SINE B2 1 182 -16 1 1325 238 197 15 90 chr3 97075532 97075599 -62524184 + Arthur1A DNA Tip100 25 86 -91 1 1325 349 169 120 33 chr3 97075933 97076025 -62523758 - B1_Mur2 SINE Alu -2 147 48 1 1325 583 317 70 14 chr3 97076923 97077155 -62522628 + MTEa LTR MaLR 3 240 -139 1 1325 424 240 129 32 chr3 97077250 97077405 -62522378 + MTEa LTR MaLR 207 376 -3 1 1325 550 315 14 34 chr3 97077492 97077699 -62522084 + MER3 DNA MER1_type 6 208 -1 1 1325 241 294 124 9 chr3 97077942 97078089 -62521694 - MIRb SINE MIR -70 198 40 1 1325 937 209 35 5 chr3 97079155 97079352 -62520431 - B3 SINE B2 0 216 14 1 1325 391 374 62 11 chr3 97079485 97079761 -62520022 - L2 LINE L2 -337 3082 2793 1 1325 861 172 37 26 chr3 97080883 97081074 -62518709 + B2_Mm2 SINE B2 2 194 -1 1 1325 1634 40 0 0 chr3 97081548 97081746 -62518037 - L1_Mus1 LINE L1 0 6567 6370 1 1325 360 18 35 17 chr3 97082099 97082157 -62517626 + (TTTTG)n Simple_repeat Simple_repeat 2 60 0 1 1325 890 175 0 0 chr3 97082157 97082294 -62517489 - B1_Mur2 SINE Alu -11 138 2 1 1325 941 209 14 50 chr3 97082899 97083097 -62516686 + B3 SINE B2 1 194 -22 1 1325 387 0 0 0 chr3 97083097 97083140 -62516643 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 1325 941 209 14 50 chr3 97083140 97083162 -62516621 + B3 SINE B2 195 213 -3 1 1325 21 0 0 0 chr3 97083162 97083183 -62516600 + AT_rich Low_complexity Low_complexity 1 21 0 1 1325 442 273 75 60 chr3 97083267 97083466 -62516317 + B3A SINE B2 15 216 0 1 1325 297 0 0 0 chr3 97083577 97083610 -62516173 + (CAGAGA)n Simple_repeat Simple_repeat 2 34 0 1 1325 564 15 0 0 chr3 97083677 97083742 -62516041 + (GAAAA)n Simple_repeat Simple_repeat 4 68 0 1 1325 252 0 0 0 chr3 97083742 97083770 -62516013 + (CAA)n Simple_repeat Simple_repeat 1 28 0 1 1325 306 0 0 0 chr3 97083868 97083902 -62515881 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 1 1325 438 154 0 0 chr3 97084357 97084435 -62515348 + (CTG)n Simple_repeat Simple_repeat 3 80 0 1 1325 260 274 139 61 chr3 97084472 97084624 -62515159 + MIRb SINE MIR 27 198 -70 1 1325 244 250 17 0 chr3 97084625 97084685 -62515098 + Kanga1c DNA Tc2 1 61 -668 1 1325 294 53 53 0 chr3 97084786 97084843 -62514940 + (CAAAAA)n Simple_repeat Simple_repeat 2 61 0 1 1325 844 192 0 7 chr3 97084863 97085010 -62514773 + B1_Mur2 SINE Alu 4 149 0 1 1325 260 280 102 0 chr3 97086508 97086626 -62513157 + Tigger13a DNA MER2_type 166 295 -476 1 1325 358 266 75 27 chr3 97086694 97086841 -62512942 + B3A SINE B2 18 171 -27 1 1325 1216 71 12 0 chr3 97086853 97087095 -62512688 + (CA)n Simple_repeat Simple_repeat 1 245 0 1 1325 755 87 76 45 chr3 97087235 97087367 -62512416 + B1_Mur4 SINE Alu 15 150 0 1 1325 22 0 0 0 chr3 97088601 97088623 -62511160 + AT_rich Low_complexity Low_complexity 1 22 0 1 1325 364 333 0 32 chr3 97088964 97089122 -62510661 - CR1_Mam LINE CR1 -416 1788 1636 1 1325 186 224 16 49 chr3 97089129 97089190 -62510593 - MIR3 SINE MIR -3 205 147 1 1325 584 236 8 16 chr3 97089328 97089457 -62510326 - B1F SINE Alu -2 147 20 1 1325 1609 173 125 6 chr3 97089666 97090027 -62509756 - MTD LTR MaLR -14 405 2 1 1325 318 26 0 0 chr3 97090473 97090512 -62509271 + (TC)n Simple_repeat Simple_repeat 2 40 0 1 1325 450 0 0 0 chr3 97090512 97090561 -62509222 + (TA)n Simple_repeat Simple_repeat 1 50 0 1 1325 971 223 14 5 chr3 97090626 97090833 -62508950 + B3 SINE B2 7 215 -1 1 1325 581 187 8 0 chr3 97090833 97090967 -62508816 + GA-rich Low_complexity Low_complexity 2 136 0 1 1325 184 327 71 52 chr3 97091364 97091574 -62508209 + L2c LINE L2 3127 3340 -47 1 1325 417 244 30 98 chr3 97091864 97091996 -62507787 + MIR SINE MIR 32 154 -108 1 1325 314 308 0 0 chr3 97092097 97092162 -62507621 - ID4 SINE ID -15 68 4 1 1325 1039 129 34 50 chr3 97093790 97093969 -62505814 + B2_Mm2 SINE B2 1 176 -19 1 1325 398 228 119 0 chr3 97094232 97094333 -62505450 - PB1D9 SINE Alu -7 113 1 1 1325 928 168 0 6 chr3 97094353 97094527 -62505256 + B2_Mm2 SINE B2 2 174 -21 1 1325 842 251 9 142 chr3 97094620 97094950 -62504833 - B4A SINE B4 -2 290 5 1 1325 254 29 29 0 chr3 97095582 97095617 -62504166 + (TTTTTG)n Simple_repeat Simple_repeat 2 37 0 1 1325 239 55 55 18 chr3 97095637 97095692 -62504091 + (TTTTG)n Simple_repeat Simple_repeat 2 58 0 1 1325 784 87 333 21 chr3 97096285 97096426 -62503357 + B2_Mm2 SINE B2 2 186 -9 1 1325 198 304 0 14 chr3 97097184 97097254 -62502529 - MIR3 SINE MIR 0 208 140 1 1325 216 0 0 0 chr3 97097434 97097458 -62502325 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 1 1325 1042 144 6 0 chr3 97097575 97097749 -62502034 - URR1B DNA MER1_type 0 225 51 1 1325 313 286 9 19 chr3 97101359 97101466 -62498317 + CT-rich Low_complexity Low_complexity 2 107 0 1 1325 322 291 12 0 chr3 97101981 97102067 -62497716 + CT-rich Low_complexity Low_complexity 3 89 0 1 1325 245 261 0 0 chr3 97102123 97102192 -62497591 + (CA)n Simple_repeat Simple_repeat 1 69 0 1 1325 186 133 0 0 chr3 97102535 97102565 -62497218 + (T)n Simple_repeat Simple_repeat 1 30 0 1 1325 468 0 0 0 chr3 97103012 97103064 -62496719 + (GA)n Simple_repeat Simple_repeat 1 52 0 1 1325 647 149 8 42 chr3 97103725 97103863 -62495920 - B1_Mur1 SINE Alu -1 148 17 1 1325 396 0 0 0 chr3 97103865 97103909 -62495874 + (CA)n Simple_repeat Simple_repeat 2 45 0 1 1325 615 227 8 8 chr3 97103938 97104071 -62495712 + B3 SINE B2 30 162 -54 1 1325 33 25 0 0 chr3 97104149 97104189 -62495594 + AT_rich Low_complexity Low_complexity 1 40 0 1 1325 198 296 147 9 chr3 97104195 97104311 -62495472 - MIRm SINE MIR -143 133 2 1 1325 342 98 0 0 chr3 97104717 97104768 -62495015 + (CA)n Simple_repeat Simple_repeat 2 52 0 1 1325 239 180 33 0 chr3 97104830 97104891 -62494892 + (CATATA)n Simple_repeat Simple_repeat 4 66 0 1 1325 295 298 11 0 chr3 97104899 97104993 -62494790 + (CATA)n Simple_repeat Simple_repeat 2 96 0 1 1325 216 300 32 43 chr3 97105633 97105664 -62494119 - B1_Mur3 SINE Alu -43 106 14 1 1325 216 270 0 0 chr3 97105664 97105727 -62494056 - ID_B1 SINE B4 -67 157 95 1 1325 307 169 0 27 chr3 97106166 97106239 -62493544 + (CATATA)n Simple_repeat Simple_repeat 2 72 0 1 1325 342 0 0 0 chr3 97106266 97106304 -62493479 + (CA)n Simple_repeat Simple_repeat 2 39 0 1 1325 581 252 6 30 chr3 97106436 97106600 -62493183 - RSINE1 SINE B4 -2 163 4 1 1325 515 260 0 67 chr3 97106723 97106742 -62493041 + ID_B1 SINE B4 70 223 -1 1 1325 851 142 0 34 chr3 97106742 97106888 -62492895 + B1_Mur1 SINE Alu 8 148 -1 1 1325 453 307 6 46 chr3 97107029 97107203 -62492580 + MIRb SINE MIR 91 257 -11 1 1325 205 276 105 0 chr3 97107222 97107298 -62492485 - MIRb SINE MIR -167 101 18 1 1325 692 199 14 56 chr3 97107429 97107573 -62492210 - B1_Mur4 SINE Alu -12 138 1 1 1325 264 250 0 0 chr3 97107829 97107941 -62491842 + GA-rich Low_complexity Low_complexity 3 114 0 1 1325 269 182 74 49 chr3 97107941 97108022 -62491761 + RLTR25B LTR ERVK 427 509 -519 1 1325 728 75 0 19 chr3 97107959 97108055 -62491728 + B1_Mus2 SINE Alu 42 137 -10 1 1325 609 40 0 0 chr3 97108055 97108131 -62491652 + (CA)n Simple_repeat Simple_repeat 2 77 0 1 1325 728 75 0 19 chr3 97108131 97108142 -62491641 + B1_Mus2 SINE Alu 138 147 0 1 1325 1041 58 50 19 chr3 97108515 97108674 -62491109 + B2_Mm2 SINE B2 31 194 -1 1 1325 236 138 30 30 chr3 97109828 97109895 -62489888 + GA-rich Low_complexity Low_complexity 1 67 0 1 1325 283 304 0 0 chr3 97109949 97110018 -62489765 - ID4 SINE ID -14 69 1 1 1325 396 0 0 0 chr3 97110076 97110120 -62489663 + (TG)n Simple_repeat Simple_repeat 1 44 0 1 1325 1889 136 16 3 chr3 97110138 97110451 -62489332 - MTC LTR MaLR 0 421 105 1 1325 764 192 17 35 chr3 97110451 97110654 -62489129 + B3 SINE B2 3 195 0 1 1325 409 190 0 12 chr3 97110651 97110736 -62489047 - MTC LTR MaLR -290 106 23 1 1325 450 282 51 22 chr3 97110959 97111138 -62488645 + B3A SINE B2 40 216 0 1 1325 835 152 0 0 chr3 97111165 97111297 -62488486 + B1_Mus1 SINE Alu 4 135 -13 1 1325 25 0 0 0 chr3 97111568 97111593 -62488190 + AT_rich Low_complexity Low_complexity 1 25 0 1 1325 953 158 6 0 chr3 97111640 97111817 -62487966 + GA-rich Low_complexity Low_complexity 3 180 0 1 1325 862 214 70 20 chr3 97113131 97113331 -62486452 + ID_B1 SINE B4 2 211 -13 1 1325 222 233 0 0 chr3 97113349 97113392 -62486391 + MER5A DNA MER1_type 145 187 -2 1 1325 1150 222 47 73 chr3 97114719 97115038 -62484745 - MTD LTR MaLR -3 416 107 1 1325 705 162 22 0 chr3 97115038 97115174 -62484609 + B1F2 SINE Alu 2 140 -9 1 1325 1150 222 47 73 chr3 97115174 97115194 -62484589 - MTD LTR MaLR -313 106 86 1 1325 432 370 9 52 chr3 97115316 97115532 -62484251 + ID_B1 SINE B4 85 291 -1 2 1325 399 254 0 0 chr3 97115591 97115713 -62484070 + (CA)n Simple_repeat Simple_repeat 1 122 0 2 1325 557 192 320 0 chr3 97116543 97116699 -62483084 - B3 SINE B2 -10 206 1 2 1325 749 182 49 35 chr3 97116739 97116881 -62482902 - B1_Mur1 SINE Alu -4 145 2 2 1325 398 250 45 134 chr3 97116740 97116897 -62482886 - ID_B1 SINE B4 -5 219 77 2 1325 201 342 0 25 chr3 97116903 97116984 -62482799 - MIR SINE MIR -64 198 120 2 1325 337 179 0 51 chr3 97117805 97117923 -62481860 + CT-rich Low_complexity Low_complexity 3 114 0 2 1325 448 262 36 27 chr3 97118243 97118353 -62481430 + MIRc SINE MIR 46 156 -112 2 1325 516 219 131 19 chr3 97118353 97118527 -62481256 - B3A SINE B2 0 216 22 2 1325 925 258 46 0 chr3 97118600 97118794 -62480989 + ID_B1 SINE B4 2 204 -20 2 1325 551 108 21 21 chr3 97118918 97119013 -62480770 - URR1B DNA MER1_type 0 225 131 2 1325 541 213 7 7 chr3 97119021 97119035 -62480748 + polypyrimidine Low_complexity Low_complexity 131 144 0 2 1325 1431 50 0 0 chr3 97119035 97119215 -62480568 + (TTCTCC)n Simple_repeat Simple_repeat 1 180 0 2 1325 541 208 9 32 chr3 97119215 97119490 -62480293 + CT-rich Low_complexity Low_complexity 1 268 0 2 1325 1247 84 0 6 chr3 97119502 97119681 -62480102 + (TTC)n Simple_repeat Simple_repeat 1 178 0 2 1325 537 233 35 0 chr3 97119689 97119805 -62479978 + RSINE1 SINE B4 46 165 0 2 1325 441 268 75 70 chr3 97119869 97120082 -62479701 + B3 SINE B2 3 216 0 2 1325 973 109 14 28 chr3 97120182 97120324 -62479459 - B1_Mur4 SINE Alu -10 140 1 2 1325 293 375 75 39 chr3 97120619 97120874 -62478909 + LTR16A1 LTR ERVL 83 346 -110 2 1325 865 176 209 0 chr3 97121075 97121257 -62478526 + URR1A DNA MER1_type 7 226 0 2 1325 217 352 19 28 chr3 97122026 97122134 -62477649 - L2 LINE L2 -957 2462 2356 2 1325 303 264 0 27 chr3 97122482 97122556 -62477227 - PB1D10 SINE Alu 0 117 46 2 1325 645 148 0 0 chr3 97122843 97122985 -62476798 + (GA)n Simple_repeat Simple_repeat 1 142 0 2 1325 322 342 27 0 chr3 97123028 97123139 -62476644 - MIR SINE MIR -76 132 19 2 1325 789 160 17 17 chr3 97123610 97123970 -62475813 + (CA)n Simple_repeat Simple_repeat 1 360 0 2 1325 615 218 53 20 chr3 97123971 97124121 -62475662 - LTR37A LTR ERV1 -271 155 1 2 165 305 82 20 0 chr3 97124305 97124354 -62475429 + (TTA)n Simple_repeat Simple_repeat 2 51 0 2 1326 891 147 27 27 chr3 97124360 97124507 -62475276 - B1_Mus2 SINE Alu 0 147 1 2 1326 603 213 50 25 chr3 97124586 97124745 -62475038 - RSINE1 SINE B4 0 165 3 2 1326 525 217 40 82 chr3 97124819 97125072 -62474711 - MER5C DNA MER1_type 0 313 78 2 1326 317 203 17 0 chr3 97125086 97125145 -62474638 - HAL1-3A_ME LINE L1 -823 2035 1976 2 1326 521 160 32 0 chr3 97125145 97125270 -62474513 + (TG)n Simple_repeat Simple_repeat 1 129 0 2 1326 660 237 76 17 chr3 97125279 97125451 -62474332 - B3A SINE B2 -16 182 1 2 1326 472 185 43 6 chr3 97125846 97126009 -62473774 + (TG)n Simple_repeat Simple_repeat 1 169 0 2 1326 420 176 38 8 chr3 97126051 97126183 -62473600 + (TG)n Simple_repeat Simple_repeat 1 136 0 2 1326 877 248 164 0 chr3 97126211 97126389 -62473394 - B4A SINE B4 0 292 83 2 1326 405 0 0 0 chr3 97126389 97126434 -62473349 + (TG)n Simple_repeat Simple_repeat 2 46 0 2 1326 877 248 164 0 chr3 97126434 97126505 -62473278 - B4A SINE B4 -210 82 3 2 1326 412 281 149 24 chr3 97127221 97127476 -62472307 - B4A SINE B4 -4 288 2 2 1326 236 287 28 73 chr3 97127476 97127488 -62472295 + MT2B LTR ERVL 155 161 -440 2 1326 361 282 86 0 chr3 97127488 97127605 -62472178 + B1F SINE Alu 1 127 -22 2 1326 336 268 0 27 chr3 97127961 97128034 -62471749 + MIRb SINE MIR 192 262 -6 2 1326 399 21 0 0 chr3 97128474 97128522 -62471261 + (CAA)n Simple_repeat Simple_repeat 2 49 0 2 1326 330 284 11 0 chr3 97130371 97130459 -62469324 + MIR3 SINE MIR 102 190 -18 2 1326 385 111 42 0 chr3 97130956 97131028 -62468755 + GA-rich Low_complexity Low_complexity 2 76 0 2 1326 562 42 0 50 chr3 97131595 97131694 -62468089 + (TCCCC)n Simple_repeat Simple_repeat 2 95 0 2 1326 468 242 92 15 chr3 97131817 97131947 -62467836 - Lx8 LINE L1 -122 7351 7212 2 1326 992 211 108 80 chr3 97132024 97132312 -62467471 - Lx8 LINE L1 -598 6875 6580 2 1326 341 268 14 81 chr3 97132771 97132982 -62466801 + RMER17C LTR ERVK 70 266 -144 2 1326 726 44 0 0 chr3 97132982 97133072 -62466711 + (GAA)n Simple_repeat Simple_repeat 1 90 0 2 1326 1541 152 139 22 chr3 97134743 97134956 -62464827 + ORR1D1 LTR MaLR 3 231 -143 2 1326 288 0 0 0 chr3 97134956 97134988 -62464795 + (CCTG)n Simple_repeat Simple_repeat 4 35 0 2 1326 1541 152 139 22 chr3 97134988 97135090 -62464693 + ORR1D1 LTR MaLR 232 354 -20 2 1326 216 182 0 0 chr3 97135110 97135143 -62464640 + L2b LINE L2 3325 3357 -18 2 1326 1114 154 93 19 chr3 97135877 97136082 -62463701 + URR1B DNA MER1_type 1 220 -5 2 1326 1250 107 11 6 chr3 97136182 97136360 -62463423 + B2_Mm1t SINE B2 1 179 -14 2 1326 317 150 0 35 chr3 97136439 97136506 -62463277 + B2_Mm2 SINE B2 47 109 -107 2 1326 26 30 0 0 chr3 97136520 97136553 -62463230 + AT_rich Low_complexity Low_complexity 1 33 0 2 1326 317 243 17 86 chr3 97136575 97136692 -62463091 - Lx8 LINE L1 -9 7464 7356 2 1326 378 0 0 0 chr3 97138325 97138367 -62461416 + (CA)n Simple_repeat Simple_repeat 2 43 0 2 1326 263 279 51 0 chr3 97139075 97139154 -62460629 + MIRb SINE MIR 61 143 -125 2 1326 1317 101 16 11 chr3 97139246 97139436 -62460347 - B2_Mm2 SINE B2 0 195 5 2 1326 387 200 182 8 chr3 97139788 97139914 -62459869 + MIR3 SINE MIR 1 148 -60 2 1326 226 265 113 38 chr3 97140682 97140788 -62458995 + MIRc SINE MIR 10 123 -145 2 1326 290 250 215 34 chr3 97140932 97140972 -62458811 - MER5B DNA MER1_type -1 177 128 2 1326 540 0 0 0 chr3 97140972 97141032 -62458751 + (CA)n Simple_repeat Simple_repeat 2 61 0 2 1326 249 33 0 0 chr3 97141032 97141062 -62458721 + (GGGTG)n Simple_repeat Simple_repeat 4 33 0 2 1326 290 250 215 34 chr3 97141062 97141169 -62458614 - MER5B DNA MER1_type -51 127 3 2 1326 382 273 130 21 chr3 97142055 97142227 -62457556 + MIRb SINE MIR 47 228 -34 2 1326 225 341 11 21 chr3 97142764 97142857 -62456926 + MIRb SINE MIR 63 154 -114 2 1326 35 0 0 0 chr3 97143185 97143220 -62456563 + AT_rich Low_complexity Low_complexity 1 35 0 2 1326 199 344 177 34 chr3 97143530 97143858 -62455925 + L2 LINE L2 2304 2678 -741 2 1326 182 279 23 0 chr3 97143933 97143976 -62455807 + L2 LINE L2 2819 2862 -557 2 1326 497 256 112 6 chr3 97143984 97144153 -62455630 + L1M1 LINE L1 5445 5631 -669 2 1326 728 183 126 110 chr3 97144182 97144428 -62455355 + RMER1B Other Other 254 503 -563 2 1326 2711 187 124 41 chr3 97144430 97145061 -62454722 + RMER1B Other Other 355 1037 -29 2 1326 710 273 104 14 chr3 97145087 97145344 -62454439 + L1MA6 LINE L1 5936 6205 -95 2 1326 207 0 0 0 chr3 97145344 97145367 -62454416 + (ATCTG)n Simple_repeat Simple_repeat 2 24 0 2 1326 710 294 107 19 chr3 97145367 97145423 -62454360 + L1MA6 LINE L1 6206 6276 -27 2 1326 258 288 29 141 chr3 97145461 97145631 -62454152 - YREP_Mm Unknown Unknown -1476 336 186 2 1326 562 242 24 8 chr3 97145513 97145638 -62454145 + B1F SINE Alu 21 147 -2 2 1326 291 262 16 0 chr3 97145651 97145712 -62454071 + ID4_ SINE ID 18 79 -4 2 1326 775 263 20 29 chr3 97145797 97146001 -62453782 - MER2 DNA MER2_type -49 296 95 2 1326 1741 240 86 5 chr3 97146235 97146653 -62453130 + MT2A LTR ERVL 5 456 -77 2 1326 477 0 0 0 chr3 97146662 97146715 -62453068 + (CA)n Simple_repeat Simple_repeat 2 54 0 2 1326 328 363 57 47 chr3 97146748 97146959 -62452824 - ORR1E LTR MaLR -127 232 20 2 1326 655 213 47 109 chr3 97147068 97147279 -62452504 - ORR1D2 LTR MaLR 0 370 173 2 1326 581 132 26 32 chr3 97147356 97147512 -62452271 + GA-rich Low_complexity Low_complexity 1 155 0 2 1326 551 237 150 42 chr3 97147515 97147682 -62452101 - ORR1D2 LTR MaLR -185 185 1 2 1326 2003 241 35 10 chr3 97149200 97149711 -62450072 - RLTR11A2 LTR ERVK -3 524 1 2 1326 3252 169 40 14 chr3 97149856 97150449 -62449334 - Lx7 LINE L1 -429 7267 6659 2 1326 759 148 14 14 chr3 97151420 97151570 -62448213 + B1_Mur4 SINE Alu 1 150 0 2 1326 35 0 0 0 chr3 97151575 97151610 -62448173 + AT_rich Low_complexity Low_complexity 1 35 0 2 1326 257 255 81 10 chr3 97151656 97151755 -62448028 - MIR SINE MIR -27 235 130 2 1326 321 212 0 0 chr3 97151890 97152003 -62447780 + (CA)n Simple_repeat Simple_repeat 2 114 0 2 1326 717 299 207 26 chr3 97152008 97152541 -62447242 + L2 LINE L2 1352 2015 -1404 2 1326 975 144 72 6 chr3 97152541 97152722 -62447061 + B2_Mm2 SINE B2 2 194 -1 2 1326 717 299 207 26 chr3 97152722 97152922 -62446861 + L2 LINE L2 2016 2217 -1202 2 1326 287 308 0 28 chr3 97152934 97153020 -62446763 - ID4_ SINE ID -54 98 15 2 1326 229 333 0 29 chr3 97152960 97153028 -62446755 - tRNA-Ala-GCY_ tRNA tRNA -9 66 1 2 1326 401 145 13 0 chr3 97153028 97153104 -62446679 + CT-rich Low_complexity Low_complexity 2 78 0 2 1326 259 285 101 34 chr3 97153113 97153262 -62446521 - FAM SINE Alu -6 305 147 2 1326 226 327 110 18 chr3 97153467 97153576 -62446207 + LTR16A LTR ERVL 101 219 -232 2 1326 311 146 0 38 chr3 97153640 97153697 -62446086 + LTR16A LTR ERVL 397 456 0 2 1326 298 335 77 35 chr3 97153906 97154076 -62445707 - Kanga2_a DNA Tc2 -502 386 210 2 1326 571 278 39 11 chr3 97154207 97154389 -62445394 + L1ME2 LINE L1 5651 5837 -327 2 1326 735 159 8 0 chr3 97154547 97154683 -62445100 - B1_Mur3 SINE Alu -2 147 6 2 1326 401 226 0 173 chr3 97154574 97154724 -62445059 - MT2B LTR ERVL -337 264 141 2 1326 452 226 11 11 chr3 97154706 97154800 -62444983 - B3 SINE B2 -122 94 1 2 1326 22 56 0 0 chr3 97154804 97154840 -62444943 + AT_rich Low_complexity Low_complexity 1 36 0 2 1326 6535 224 28 46 chr3 97155077 97156563 -62443220 - Lx7 LINE L1 -16 7680 6222 3 1326 2411 192 37 8 chr3 97156559 97157185 -62442598 - Lx7 LINE L1 -1661 6035 5393 3 1326 4746 96 84 65 chr3 97157185 97158074 -62441709 + RMER17A2 LTR ERVK 1 906 0 3 1326 5199 143 29 17 chr3 97158074 97159039 -62440744 - Lx7 LINE L1 -482 5398 4422 3 1326 210 37 0 0 chr3 97159039 97159066 -62440717 + (T)n Simple_repeat Simple_repeat 1 27 0 3 1326 330 238 12 0 chr3 97159076 97159156 -62440627 - Lx7 LINE L1 -3158 2722 2642 3 1326 1070 214 135 18 chr3 97159143 97159424 -62440359 - Lx6 LINE L1 -1 7459 7146 3 1326 243 255 0 0 chr3 97159451 97159498 -62440285 + Lx5 LINE L1 6463 6509 -541 3 1326 516 215 6 153 chr3 97159493 97159669 -62440114 - Lx7 LINE L1 -3214 2666 2517 3 1326 1261 152 0 5 chr3 97159685 97159883 -62439900 - MTC LTR MaLR 0 421 225 3 1326 974 91 0 7 chr3 97159892 97160036 -62439747 + (TTTCC)n Simple_repeat Simple_repeat 3 145 0 3 1326 39 58 0 22 chr3 97160036 97160084 -62439699 + AT_rich Low_complexity Low_complexity 1 47 0 3 1326 1315 71 48 21 chr3 97160084 97160271 -62439512 - B2_Mm2 SINE B2 -1 194 3 3 1326 39 58 0 22 chr3 97160271 97160311 -62439472 + AT_rich Low_complexity Low_complexity 1 40 0 3 1326 1909 211 72 23 chr3 97160312 97160743 -62439040 - Lx6 LINE L1 -27 7433 6982 3 1326 1239 155 27 18 chr3 97160744 97160967 -62438816 - MTC LTR MaLR -196 225 1 3 1326 4364 175 58 30 chr3 97160967 97161951 -62437832 - Lx7 LINE L1 -3375 2505 1494 3 1326 253 174 0 0 chr3 97161951 97161997 -62437786 - MT2A LTR ERVL 0 533 488 3 1326 484 206 213 40 chr3 97161997 97162273 -62437510 - Lx7 LINE L1 -6719 1009 552 3 1326 328 314 119 57 chr3 97162431 97162709 -62437074 - L1ME2 LINE L1 -14 6159 5867 3 1326 308 362 40 0 chr3 97162977 97163154 -62436629 + L1M4c LINE L1 1050 1233 -5151 3 1326 978 221 9 24 chr3 97163583 97163796 -62435987 + B3 SINE B2 5 214 -2 3 1326 234 0 0 0 chr3 97163936 97163962 -62435821 + (T)n Simple_repeat Simple_repeat 1 26 0 3 1326 1201 55 0 0 chr3 97163962 97164108 -62435675 - B1_Mus2 SINE Alu 0 147 2 3 1326 2121 264 82 52 chr3 97164123 97164783 -62435000 - Lx8 LINE L1 -449 7024 6345 3 1326 4955 31 17 0 chr3 97164783 97165358 -62434425 + L1Md_F2 LINE L1 5998 6582 0 3 1326 407 234 85 0 chr3 97165556 97165650 -62434133 - PB1D9 SINE Alu -5 115 14 3 1326 456 304 7 29 chr3 97165989 97166128 -62433655 - ORR1E LTR MaLR -223 136 1 3 1326 315 330 130 24 chr3 97166226 97166518 -62433265 - L1MEc LINE L1 -5967 433 111 3 1326 348 312 58 101 chr3 97166727 97166916 -62432867 - B3A SINE B2 -16 182 2 3 1326 365 311 143 40 chr3 97166958 97167363 -62432420 - L1MA5 LINE L1 -7 6293 5847 3 1326 2745 214 58 30 chr3 97167368 97168037 -62431746 + RMER15-int LTR ERVL 4281 4968 -31 3 1326 279 255 83 19 chr3 97168377 97168485 -62431298 + RMER15 LTR ERVL 424 538 -37 3 1326 4147 131 62 83 chr3 97168643 97169461 -62430322 + RMER19B LTR ERVK 1 801 -101 3 1326 367 277 0 0 chr3 97169527 97169630 -62430153 + L1_Mur3 LINE L1 4423 4530 -1353 3 1326 290 77 0 0 chr3 97169631 97169670 -62430113 - L1_Mur3 LINE L1 -1320 4560 4522 3 1326 1329 266 143 19 chr3 97169817 97170111 -62429672 - L1MA5 LINE L1 -1063 5080 4749 3 1326 1316 46 103 6 chr3 97170111 97170129 -62429654 - B2_Mm1a SINE B2 0 193 176 3 1326 207 0 0 0 chr3 97170129 97170152 -62429631 + (TTTA)n Simple_repeat Simple_repeat 3 25 0 3 1326 1316 46 103 6 chr3 97170152 97170308 -62429475 - B2_Mm1a SINE B2 -18 175 3 3 1326 1329 266 143 19 chr3 97170308 97170661 -62429122 - L1MA5 LINE L1 -1395 4748 4354 3 1326 236 88 0 29 chr3 97170899 97170934 -62428849 - Lx6 LINE L1 -1571 5889 5856 3 1326 581 163 0 37 chr3 97170934 97171042 -62428741 + B1_Mus2 SINE Alu 38 141 -6 3 1326 307 55 18 18 chr3 97171045 97171100 -62428683 + (CAAA)n Simple_repeat Simple_repeat 1 55 0 3 1326 21 0 0 0 chr3 97171275 97171296 -62428487 + AT_rich Low_complexity Low_complexity 1 21 0 3 1326 1695 10 0 5 chr3 97171359 97171557 -62428226 - L1Md_F2 LINE L1 -10 6572 6376 3 1326 920 165 51 6 chr3 97171939 97172116 -62427667 + RLTR20B3 LTR ERVK 1 185 -392 3 1326 208 355 27 18 chr3 97172475 97172587 -62427196 + L2b LINE L2 2910 3022 -353 3 1326 2268 55 7 0 chr3 97172791 97173066 -62426717 - L1_Mm LINE L1 -232 5651 5375 3 1326 452 111 0 2 chr3 97173061 97173133 -62426650 + L1_Mus1 LINE L1 6330 6400 -166 3 1326 1240 87 0 11 chr3 97173254 97173439 -62426344 + L1Md_F2 LINE L1 6400 6582 0 3 1326 448 278 191 11 chr3 97173732 97173994 -62425789 + MLT1D LTR MaLR 192 500 -5 3 1326 2653 317 42 5 chr3 97174271 97175107 -62424676 - Lx8 LINE L1 -123 7350 6484 3 1326 1919 183 20 3 chr3 97175112 97175469 -62424314 - MTD LTR MaLR -42 377 15 3 1326 4976 128 55 27 chr3 97176256 97177135 -62422648 + RMER17A2 LTR ERVK 1 903 -3 3 1326 370 285 69 116 chr3 97177729 97178047 -62421736 + ORR1E LTR MaLR 16 318 -41 3 1326 887 57 0 31 chr3 97178064 97178191 -62421592 - B1_Mus1 SINE Alu 0 148 26 3 1326 801 178 27 7 chr3 97178233 97178380 -62421403 + B1_Mur4 SINE Alu 1 150 0 3 1326 906 35 0 0 chr3 97178381 97178495 -62421288 + (GGA)n Simple_repeat Simple_repeat 1 114 0 3 1326 322 250 190 0 chr3 97178713 97178829 -62420954 - B1F SINE Alu -11 138 1 3 1326 232 319 240 12 chr3 97179380 97179551 -62420232 - MIR SINE MIR -47 215 6 3 1326 217 243 14 54 chr3 97179695 97179769 -62420014 - MIR SINE MIR -21 241 171 3 1326 464 300 8 23 chr3 97179772 97179905 -62419878 + RSINE1 SINE B4 23 153 -12 3 1326 383 229 189 101 chr3 97179983 97180221 -62419562 - RLTR10A LTR ERVK -13 398 140 3 1326 1939 202 17 29 chr3 97180257 97180753 -62419030 - IAP-d-int LTR ERVK -202 7042 6522 3 1326 2060 319 51 48 chr3 97180854 97182741 -62417042 - IAP-d-int LTR ERVK -1462 5080 3224 3 1326 375 278 41 41 chr3 97182744 97182913 -62416870 - IAP-d-int LTR ERVK -4149 2393 2225 3 1326 488 237 183 50 chr3 97183265 97183505 -62416278 - RLTR10A LTR ERVK 0 411 140 3 1326 483 107 0 0 chr3 97184125 97184200 -62415583 + (CA)n Simple_repeat Simple_repeat 1 75 0 3 1326 261 236 28 4 chr3 97184238 97184310 -62415473 - L1MA4A LINE L1 -364 5927 5856 3 1326 232 83 20 20 chr3 97184324 97184373 -62415410 + (TTTG)n Simple_repeat Simple_repeat 2 50 0 3 1326 2305 212 26 95 chr3 97184373 97185014 -62414769 + RMER19C LTR ERVK 12 608 -3 3 1326 739 296 55 36 chr3 97185016 97185346 -62414437 - L1MA4A LINE L1 -447 5856 5521 3 1326 540 0 0 0 chr3 97185387 97185447 -62414336 + (TC)n Simple_repeat Simple_repeat 1 60 0 3 1326 558 162 162 0 chr3 97185447 97185552 -62414231 - B1_Mur4 SINE Alu -15 135 14 3 1326 318 256 48 12 chr3 97185482 97185565 -62414218 - B4A SINE B4 -125 167 82 3 1326 347 233 78 85 chr3 97185566 97185668 -62414115 - L1_Rod LINE L1 -430 5417 5325 3 1326 2887 46 0 0 chr3 97185668 97186014 -62413769 - ORR1A1 LTR MaLR 0 346 1 3 1326 347 233 78 85 chr3 97186014 97186052 -62413731 - L1_Rod LINE L1 -523 5324 5278 3 1326 584 250 0 8 chr3 97186053 97186182 -62413601 + B3A SINE B2 3 130 -68 3 1326 424 326 16 48 chr3 97186386 97186573 -62413210 + B4A SINE B4 112 292 0 3 1326 276 289 61 0 chr3 97186633 97186747 -62413036 + L1M4 LINE L1 5001 5121 -1025 3 1326 284 258 82 47 chr3 97186747 97186843 -62412940 + PB1D7 SINE Alu 1 95 -54 3 1326 1895 192 44 29 chr3 97186844 97187154 -62412629 - L1_Rod LINE L1 -2492 3355 3046 3 1326 1223 135 0 30 chr3 97187154 97187353 -62412430 - B2_Mm2 SINE B2 -1 194 2 3 1326 1895 192 44 29 chr3 97187353 97187498 -62412285 - L1_Rod LINE L1 -2802 3045 2894 3 1326 2847 96 14 23 chr3 97187499 97187938 -62411845 + RMER6B LTR ERVK 1 435 -26 3 1326 409 167 13 13 chr3 97187955 97188034 -62411749 - L1_Rod LINE L1 -2949 2898 2820 3 1326 216 123 52 17 chr3 97188036 97188094 -62411689 + (TATAA)n Simple_repeat Simple_repeat 5 64 0 3 1326 2777 181 30 20 chr3 97188095 97188693 -62411090 + L1_Rod LINE L1 1967 2570 -3277 3 1326 24 32 0 0 chr3 97188697 97188728 -62411055 + AT_rich Low_complexity Low_complexity 1 31 0 3 1326 860 194 37 11 chr3 97188801 97188989 -62410794 - B2_Mm2 SINE B2 -1 194 2 3 1326 3597 182 22 11 chr3 97188990 97189943 -62409840 - L1_Rod LINE L1 -3903 1944 982 3 1326 236 325 0 49 chr3 97189943 97190024 -62409759 - RMER20B LTR ERVK -25 602 526 3 1326 1097 233 269 4 chr3 97190027 97190500 -62409283 - RMER20B LTR ERVK -29 598 1 3 1326 1080 242 8 8 chr3 97190500 97190746 -62409037 - L1_Rod LINE L1 -6621 987 742 3 1326 345 280 204 0 chr3 97190822 97191008 -62408775 - L1_Rod LINE L1 -6864 744 521 3 1326 1607 280 106 29 chr3 97191010 97191565 -62408218 + MTE-int LTR MaLR 914 1511 -69 3 1326 461 325 85 82 chr3 97191561 97191903 -62407880 + ORR1E LTR MaLR 9 351 -8 3 1326 342 294 33 0 chr3 97191893 97191991 -62407792 - PB1D10 SINE Alu -11 109 3 3 1326 869 127 13 0 chr3 97192038 97192188 -62407595 + URR1A DNA MER1_type 75 226 0 3 1326 419 268 41 47 chr3 97192041 97192213 -62407570 - CYRA11_Mm Unknown Y-chromosome -297 320 150 3 1326 1991 89 45 19 chr3 97192228 97192537 -62407246 + ORR1A3 LTR MaLR 1 317 -9 3 1326 513 238 123 11 chr3 97192590 97192866 -62406917 + L1MC LINE L1 2734 3040 -3106 3 1326 865 193 120 0 chr3 97192879 97193071 -62406712 - B3 SINE B2 0 216 2 3 1326 837 161 14 27 chr3 97193096 97193243 -62406540 - B1_Mur3 SINE Alu 0 149 5 3 1326 284 329 18 37 chr3 97193481 97193645 -62406138 + L1M5 LINE L1 4788 4948 -1198 3 1326 1269 246 87 3 chr3 97193954 97194288 -62405495 - ORR1D2 LTR MaLR -7 363 2 3 1326 235 328 30 30 chr3 97194557 97194689 -62405094 + L1M5 LINE L1 5643 5774 -388 3 1326 810 246 65 19 chr3 97194738 97194999 -62404784 + L1MA5 LINE L1 6023 6295 -5 3 1326 699 239 72 29 chr3 97195257 97195464 -62404319 + B3 SINE B2 1 216 0 3 1326 351 0 0 0 chr3 97195910 97195949 -62403834 + (CA)n Simple_repeat Simple_repeat 2 40 0 3 1326 473 305 63 78 chr3 97196026 97196421 -62403362 + L1MEf LINE L1 1274 1662 -4538 3 1326 235 226 0 0 chr3 97196431 97196484 -62403299 - Charlie2b DNA MER1_type -887 1895 1843 3 1326 317 86 17 0 chr3 97197068 97197126 -62402657 + (CAAAA)n Simple_repeat Simple_repeat 2 60 0 3 1326 1256 202 184 33 chr3 97197355 97197719 -62402064 - MTD LTR MaLR 0 419 1 3 1326 1072 267 109 35 chr3 97199221 97199679 -62400104 - ERVL-B4-int LTR ERVL -2518 3196 2705 3 1326 856 175 96 15 chr3 97199679 97199876 -62399907 - ORR1C2 LTR MaLR 0 384 172 3 1326 576 130 0 0 chr3 97199876 97199968 -62399815 + (GA)n Simple_repeat Simple_repeat 1 92 0 3 1326 723 188 71 0 chr3 97199968 97200122 -62399661 - ORR1C2 LTR MaLR -193 181 17 3 1326 3417 61 5 11 chr3 97200140 97200573 -62399210 - L1_Mus2 LINE L1 0 6566 6137 3 1326 4862 74 0 0 chr3 97200571 97201192 -62398591 + L1Md_T LINE L1 5961 6581 -1 3 1326 13701 79 6 2 chr3 97201193 97203298 -62396485 - L1_Mus2 LINE L1 -419 6147 4035 3 1326 922 204 94 5 chr3 97203343 97203535 -62396248 + B3 SINE B2 2 210 -6 3 1326 186 71 0 0 chr3 97203646 97203674 -62396109 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 3 1326 519 271 54 51 chr3 97203687 97203983 -62395800 + RLTR15 LTR ERVK 49 345 -14 4 1326 2184 280 49 13 chr3 97204001 97204674 -62395109 - ERVL-B4-int LTR ERVL -3619 2095 1399 3 1326 791 220 34 0 chr3 97204747 97204924 -62394859 - ERVL-B4-int LTR ERVL -4428 1286 1104 3 1326 845 224 94 76 chr3 97204939 97205215 -62394568 - ORR1D2 LTR MaLR -2 368 88 4 1326 272 205 56 3 chr3 97205205 97205280 -62394503 + PB1D10 SINE Alu 16 94 -53 4 1326 419 282 105 37 chr3 97205329 97205491 -62394292 - ERVL-E-int LTR ERVL -2173 3494 3322 4 1326 273 324 19 38 chr3 97206127 97206233 -62393550 + RMER15 LTR ERVL 380 483 -92 4 1326 447 73 0 0 chr3 97207578 97207646 -62392137 + (CA)n Simple_repeat Simple_repeat 2 69 0 4 1326 269 273 60 10 chr3 97208332 97208432 -62391351 - MTEb LTR MaLR 0 379 275 4 1326 720 246 20 183 chr3 97208927 97209374 -62390409 + Lx5 LINE L1 5909 6282 -768 4 1326 1193 98 16 0 chr3 97209374 97209567 -62390216 - RLTR11A LTR ERVK 0 528 333 4 1326 2020 264 88 102 chr3 97209569 97210345 -62389438 + Lx5 LINE L1 6277 7041 -9 4 1326 709 259 64 15 chr3 97210494 97210524 -62389259 + L1MA4 LINE L1 5660 5689 -602 4 1326 3520 107 168 159 chr3 97210524 97211422 -62388361 - RMER17A2 LTR ERVK 0 906 1 4 1326 729 242 51 11 chr3 97211422 97211657 -62388126 + L1MA4 LINE L1 5690 5937 -354 4 1326 1966 149 90 0 chr3 97212157 97212513 -62387270 + RMER19B LTR ERVK 2 389 -513 4 1326 305 321 6 53 chr3 97213574 97213745 -62386038 + RMER4A LTR ERVK 25 187 -279 4 1326 680 242 5 26 chr3 97213944 97214139 -62385644 - RMER30 DNA MER1_type -2 200 10 4 1326 976 286 18 18 chr3 97215635 97215916 -62383867 - B4 SINE B4 -8 284 4 4 1326 1327 307 101 8 chr3 97215973 97216716 -62383067 + L1M4 LINE L1 4172 4983 -1163 4 1326 420 71 0 0 chr3 97216799 97216855 -62382928 + (CAATA)n Simple_repeat Simple_repeat 3 58 0 4 1326 2531 96 28 19 chr3 97216944 97217306 -62382477 + RLTR8 LTR ERVK 1 365 0 4 1326 1112 126 38 91 chr3 97217306 97217516 -62382267 + SRV_MM-int LTR ERVK 1 199 -5968 4 1326 331 65 22 0 chr3 97217525 97217571 -62382212 - RLTR8 LTR ERVK -318 47 1 4 1326 1043 212 15 0 chr3 97217681 97217884 -62381899 + Lx8 LINE L1 6332 6537 -936 4 1326 2650 63 3 17 chr3 97217884 97218241 -62381542 - L1Md_F2 LINE L1 -1 6581 6230 4 1326 5192 58 0 2 chr3 97218241 97218915 -62380868 + L1Md_F2 LINE L1 5544 6216 -366 4 1326 2408 255 118 39 chr3 97218944 97219781 -62380002 + Lx8 LINE L1 6569 7471 -2 4 1326 414 39 0 0 chr3 97221307 97221359 -62378424 + (CA)n Simple_repeat Simple_repeat 2 53 0 4 1326 987 92 7 0 chr3 97222388 97222530 -62377253 + L1_Mus1 LINE L1 6423 6565 -2 4 1326 669 47 0 0 chr3 97224125 97224210 -62375573 + (TG)n Simple_repeat Simple_repeat 2 86 0 4 1326 767 222 45 64 chr3 97224342 97224544 -62375239 + B3A SINE B2 1 198 0 4 1326 858 184 20 0 chr3 97226556 97226703 -62373080 + MTEa LTR MaLR 1 150 -229 4 1326 942 208 21 68 chr3 97226725 97226959 -62372824 - RMER15 LTR ERVL -68 507 285 4 1326 1446 219 145 21 chr3 97226959 97226976 -62372807 + MTD LTR MaLR 1 15 -404 4 1326 602 26 0 13 chr3 97226976 97227053 -62372730 + (TTTTG)n Simple_repeat Simple_repeat 5 80 0 4 1326 1446 219 145 21 chr3 97227053 97227408 -62372375 + MTD LTR MaLR 16 419 0 4 1326 772 227 125 46 chr3 97227408 97227634 -62372149 - RMER15 LTR ERVL -291 284 40 4 1326 228 235 59 0 chr3 97227664 97227715 -62372068 - RMER15 LTR ERVL -521 54 1 4 1326 857 231 29 34 chr3 97227718 97227924 -62371859 + MTEa LTR MaLR 151 355 -24 4 1326 228 324 89 36 chr3 97228198 97228310 -62371473 + B3A SINE B2 3 120 -78 4 1326 285 155 0 0 chr3 97228464 97228522 -62371261 + GA-rich Low_complexity Low_complexity 2 59 0 4 1326 544 252 76 9 chr3 97228535 97228759 -62371024 + L1MB7 LINE L1 5615 5853 -331 4 1326 7416 80 10 1 chr3 97229223 97230254 -62369529 - L1_Mus3 LINE L1 -12 6626 5587 4 1326 4864 88 26 1 chr3 97230261 97230977 -62368806 + L1_Mus3 LINE L1 4829 5562 -321 4 1326 22 0 0 0 chr3 97231551 97231573 -62368210 + AT_rich Low_complexity Low_complexity 1 22 0 4 1326 1389 234 96 6 chr3 97231622 97231957 -62367826 - ORR1D2 LTR MaLR 0 370 6 4 1326 270 294 163 23 chr3 97231959 97232088 -62367695 + MLT1E2 LTR MaLR 149 295 -332 4 1326 501 47 0 0 chr3 97232187 97232251 -62367532 + (TCCC)n Simple_repeat Simple_repeat 4 67 0 4 1326 382 89 0 43 chr3 97232411 97232481 -62367302 + (TCCC)n Simple_repeat Simple_repeat 3 69 0 4 1326 582 15 0 0 chr3 97232503 97232570 -62367213 + (TG)n Simple_repeat Simple_repeat 2 68 0 4 1326 524 297 14 7 chr3 97232584 97232723 -62367060 - RSINE1 SINE B4 -22 143 4 4 1326 2603 94 155 15 chr3 97232792 97233257 -62366526 + RLTR47_MM LTR ERV1 1 530 -2 4 1326 256 323 60 23 chr3 97233426 97233559 -62366224 + MIRb SINE MIR 72 209 -59 4 1326 1406 152 150 8 chr3 97233592 97233858 -62365925 - RMER4B LTR ERVK -12 573 270 4 1326 3320 158 91 28 chr3 97233864 97234501 -62365282 - RLTR33 LTR ERVK -1 677 1 4 1326 1545 138 0 0 chr3 97234688 97234919 -62364864 - RMER4B LTR ERVK -338 247 17 4 1326 1197 162 50 14 chr3 97234943 97235162 -62364621 - MTB_Mm LTR MaLR 0 407 181 4 1326 8650 198 74 102 chr3 97235196 97237258 -62362525 - Lx4B LINE L1 0 7058 4849 4 1326 944 200 99 5 chr3 97237258 97237357 -62362426 - MTB_Mm LTR MaLR -201 220 120 4 1326 3959 62 0 0 chr3 97237357 97237859 -62361924 + L1Md_F2 LINE L1 6081 6582 0 4 1326 944 200 99 5 chr3 97237859 97237960 -62361823 - MTC LTR MaLR -302 119 1 4 1326 8650 197 33 180 chr3 97237960 97238921 -62360862 - Lx4B LINE L1 -1029 4848 4141 4 1326 252 0 0 0 chr3 97238921 97238949 -62360834 + (TG)n Simple_repeat Simple_repeat 1 28 0 4 1326 504 0 0 0 chr3 97238949 97239004 -62360779 + (GA)n Simple_repeat Simple_repeat 1 56 0 4 1326 8650 197 33 180 chr3 97239004 97239022 -62360761 - Lx4B LINE L1 -1737 4140 4129 4 1326 899 298 14 32 chr3 97239022 97239303 -62360480 - B4 SINE B4 -12 280 5 4 1326 8650 197 33 180 chr3 97239303 97239461 -62360322 - Lx4B LINE L1 -1749 4128 4029 4 1326 629 25 13 0 chr3 97239461 97239540 -62360243 + (TCTA)n Simple_repeat Simple_repeat 1 80 0 4 1326 8650 197 33 180 chr3 97239540 97241410 -62358373 - Lx4B LINE L1 -1849 4028 2281 4 1326 2598 265 14 12 chr3 97241412 97242102 -62357681 - MERVL_2A-int LTR ERVL -2802 2959 2268 4 1326 568 290 24 0 chr3 97242097 97242266 -62357517 - MERVL_2A-int LTR ERVL -3595 2162 1990 4 1326 657 266 38 34 chr3 97242292 97242529 -62357254 - MERVL_2A-int LTR ERVL -3846 1868 1631 4 1326 2002 173 22 39 chr3 97242536 97242896 -62356887 + ORR1B1 LTR MaLR 41 394 0 4 1326 2129 310 52 24 chr3 97242896 97243497 -62356286 - MERVL_2A-int LTR ERVL -4077 1680 1053 4 1326 1090 98 67 22 chr3 97243497 97243675 -62356108 - B2_Mm2 SINE B2 -8 187 2 4 1326 2129 317 61 48 chr3 97243675 97244324 -62355459 - MERVL_2A-int LTR ERVL -4705 1052 305 4 1326 1017 236 60 86 chr3 97244334 97244703 -62355080 - MTD LTR MaLR -12 407 7 4 1326 231 88 0 0 chr3 97244864 97244898 -62354885 + (CATA)n Simple_repeat Simple_repeat 2 35 0 4 1326 35018 30 2 1 chr3 97245473 97250580 -62349203 + L1Md_T LINE L1 474 5586 -297 4 1326 8352 40 0 0 chr3 97250580 97251576 -62348207 + L1Md_T LINE L1 5587 6582 0 4 1326 408 94 0 0 chr3 97251577 97251641 -62348142 - RMER12 LTR ERVK -638 684 621 4 1326 26 0 0 0 chr3 97251677 97251703 -62348080 + AT_rich Low_complexity Low_complexity 1 26 0 4 1326 977 309 95 38 chr3 97252095 97252590 -62347193 - MT2A LTR ERVL -1 532 10 4 1326 1771 177 62 124 chr3 97252720 97253237 -62346546 + RMER17B LTR ERVK 1 485 -473 4 1326 508 327 54 28 chr3 97253293 97253834 -62345949 - L1_Rod LINE L1 -4090 1757 1203 4 1326 1000 158 43 5 chr3 97254063 97254248 -62345535 - B2_Mm2 SINE B2 -3 192 1 4 1326 415 320 89 4 chr3 97254766 97255014 -62344769 - L1_Mur3 LINE L1 -3314 2566 2298 4 1326 438 216 7 21 chr3 97255075 97255217 -62344566 + (CATATA)n Simple_repeat Simple_repeat 4 143 0 4 1327 237 260 92 23 chr3 97255434 97255564 -62344219 - L1_Mur3 LINE L1 -3907 1970 1832 4 1327 328 229 50 40 chr3 97255932 97256032 -62343751 + MTE2b LTR MaLR 278 378 -1 4 1327 500 225 14 14 chr3 97256037 97256181 -62343602 + L1MDa LINE L1 1856 1999 -4634 4 1327 738 259 109 16 chr3 97256226 97256548 -62343235 - Lx9 LINE L1 -27 7617 7266 4 1327 1441 74 16 0 chr3 97256583 97256772 -62343011 - B2_Mm2 SINE B2 -2 193 2 4 1327 288 276 175 43 chr3 97256786 97257294 -62342489 + L1MDa LINE L1 2005 2579 -4054 4 1327 914 39 0 8 chr3 97257328 97257457 -62342326 + L1Md_T LINE L1 6453 6580 -2 4 1327 232 143 18 18 chr3 97257549 97257606 -62342177 + GA-rich Low_complexity Low_complexity 2 58 0 4 1327 236 215 31 31 chr3 97257715 97257811 -62341972 + (TATATG)n Simple_repeat Simple_repeat 1 96 0 4 1327 392 256 71 11 chr3 97257818 97258000 -62341783 + L1M5 LINE L1 5333 5525 -654 4 1327 233 290 32 0 chr3 97258199 97258292 -62341491 + L1MA10 LINE L1 6227 6322 -12 4 1327 2037 51 16 0 chr3 97258645 97258898 -62340885 - L1_Mus1 LINE L1 0 6567 6311 4 1327 21 36 0 0 chr3 97259933 97259961 -62339822 + AT_rich Low_complexity Low_complexity 1 28 0 4 1327 291 360 40 20 chr3 97260167 97260317 -62339466 - MIRc SINE MIR -68 200 48 4 1327 375 295 134 0 chr3 97260317 97260429 -62339354 - B1F SINE Alu 0 149 23 4 1327 256 370 90 45 chr3 97260322 97260455 -62339328 - ID_B1 SINE B4 -5 219 81 4 1327 937 253 91 8 chr3 97260729 97260972 -62338811 + MTD LTR MaLR 145 407 -12 4 1327 226 24 47 47 chr3 97262179 97262222 -62337561 + (TCTCTG)n Simple_repeat Simple_repeat 6 48 0 4 1327 189 229 0 0 chr3 97262245 97262293 -62337490 + GA-rich Low_complexity Low_complexity 1 48 0 4 1327 21 0 0 0 chr3 97262641 97262662 -62337121 + AT_rich Low_complexity Low_complexity 1 21 0 4 1327 25 0 0 0 chr3 97262770 97262795 -62336988 + AT_rich Low_complexity Low_complexity 1 25 0 4 1327 239 294 0 0 chr3 97262807 97262858 -62336925 + (CACG)n Simple_repeat Simple_repeat 4 54 0 4 1327 528 306 48 68 chr3 97262877 97263024 -62336759 - RSINE1 SINE B4 -16 149 6 4 1327 763 237 0 88 chr3 97263736 97263953 -62335830 + B3A SINE B2 1 198 0 4 1327 1423 262 71 6 chr3 97264586 97264950 -62334833 - MTD LTR MaLR 0 419 32 4 1327 537 282 8 0 chr3 97265078 97265202 -62334581 - ID_B1 SINE B4 -2 222 98 4 1327 638 313 92 28 chr3 97265338 97265874 -62333909 - L1_Mur3 LINE L1 -577 5714 5109 4 1327 517 279 70 9 chr3 97265886 97266159 -62333624 - L1_Mur3 LINE L1 -1062 5084 4766 4 1327 1380 46 7 0 chr3 97266160 97266573 -62333210 + (CACAG)n Simple_repeat Simple_repeat 1 415 0 4 1327 868 247 51 40 chr3 97266582 97266835 -62332948 - ORR1D2 LTR MaLR -4 366 111 4 1327 622 241 56 111 chr3 97266847 97267188 -62332595 - RMER10A LTR ERVL -25 417 96 4 1327 3736 204 84 107 chr3 97267263 97268552 -62331231 + ORR1D1-int LTR MaLR 5 1292 -78 4 1327 947 188 0 40 chr3 97268552 97268729 -62331054 + RLTR18 LTR ERVK 3 172 -444 4 1327 1310 139 5 5 chr3 97268729 97268931 -62330852 + ORR1B2 LTR MaLR 1 202 -165 4 1327 1185 205 60 20 chr3 97268937 97269168 -62330615 + ORR1C1 LTR MaLR 120 365 -13 4 1327 2575 97 169 2 chr3 97269168 97269624 -62330159 - RLTR47_MM LTR ERV1 0 532 1 4 1327 1185 205 60 20 chr3 97269624 97269641 -62330142 + ORR1C1 LTR MaLR 366 378 0 4 1327 2678 176 4 8 chr3 97269658 97270127 -62329656 + RLTR18 LTR ERVK 150 616 0 4 1327 458 95 149 0 chr3 97270127 97270201 -62329582 + ORR1D1-int LTR MaLR 1286 1370 0 4 1327 661 165 9 9 chr3 97270201 97270317 -62329466 + ORR1D1 LTR MaLR 1 116 -258 4 1327 382 259 25 0 chr3 97270340 97270421 -62329362 - ORR1D2 LTR MaLR -287 83 1 4 1327 1274 274 72 2 chr3 97270434 97270986 -62328797 - L1M2 LINE L1 -1360 4783 4193 4 1327 420 16 30 30 chr3 97271011 97271077 -62328706 + (TCTA)n Simple_repeat Simple_repeat 1 66 0 5 1327 486 61 0 0 chr3 97271077 97271143 -62328640 + (TG)n Simple_repeat Simple_repeat 2 67 0 5 1327 596 236 98 0 chr3 97271144 97271267 -62328516 - RSINE1 SINE B4 -23 142 8 5 1327 917 272 49 14 chr3 97271294 97271646 -62328137 - L1_Mur3 LINE L1 -1990 4156 3761 5 1327 587 227 31 8 chr3 97271665 97271794 -62327989 - B1_Mur1 SINE Alu 0 149 18 5 1327 1006 268 52 90 chr3 97271810 97272397 -62327386 - L1M2 LINE L1 -2357 3786 3198 4 1327 1239 54 0 0 chr3 97272397 97272544 -62327239 + B1_Mm SINE Alu 1 147 0 5 1327 1006 268 52 90 chr3 97272544 97272648 -62327135 - L1M2 LINE L1 -2946 3197 3121 4 1327 746 237 125 10 chr3 97272713 97272750 -62327033 - B3 SINE B2 -2 214 171 5 1327 432 0 0 0 chr3 97272750 97272798 -62326985 + (TG)n Simple_repeat Simple_repeat 2 49 0 5 1327 746 237 125 10 chr3 97272798 97272952 -62326831 - B3 SINE B2 -46 170 2 5 1327 1066 289 76 34 chr3 97272952 97273621 -62326162 - L1_Rod LINE L1 -2822 3025 2329 5 1327 302 155 0 17 chr3 97274365 97274424 -62325359 + L1_Mus4 LINE L1 6027 6084 -552 5 1327 702 339 122 58 chr3 97275556 97276041 -62323742 + MER21B LTR ERV1 297 812 -51 5 1327 231 36 0 0 chr3 97276074 97276102 -62323681 + (TG)n Simple_repeat Simple_repeat 1 28 0 5 1327 342 0 0 0 chr3 97276102 97276139 -62323644 + (GA)n Simple_repeat Simple_repeat 1 38 0 5 1327 270 324 187 19 chr3 97276361 97276468 -62323315 - B4 SINE B4 0 292 168 5 1327 1083 192 9 63 chr3 97276640 97276862 -62322921 - B3 SINE B2 -6 210 1 5 1327 621 100 0 0 chr3 97277336 97277426 -62322357 + (TG)n Simple_repeat Simple_repeat 1 90 0 5 1327 613 189 7 14 chr3 97277823 97277968 -62321815 + CT-rich Low_complexity Low_complexity 1 144 0 5 1327 2201 308 91 22 chr3 97278362 97279415 -62320368 + L1_Mur3 LINE L1 4693 5818 -62 5 1327 2129 153 85 5 chr3 97279466 97279854 -62319929 - MTC LTR MaLR 0 421 3 5 1327 437 143 2 23 chr3 97280117 97280200 -62319583 - L1_Mur3 LINE L1 -329 5557 5471 5 1327 793 106 14 14 chr3 97280357 97280500 -62319283 + Lx4A LINE L1 6916 7058 0 5 1327 2666 155 11 26 chr3 97281005 97281784 -62317999 - L1_Mur1 LINE L1 -4371 1506 802 5 1327 1781 155 167 126 chr3 97282891 97283423 -62316360 + RMER19B LTR ERVK 1 554 -348 5 1327 5312 216 19 21 chr3 97283459 97284577 -62315206 - Lx7 LINE L1 -438 7258 6143 5 1327 7370 167 28 75 chr3 97284566 97286252 -62313531 - L1_Mur3 LINE L1 -765 5115 3509 5 1327 670 250 7 20 chr3 97286259 97286410 -62313373 + B1_Mur2 SINE Alu 1 149 0 5 1327 2687 176 55 17 chr3 97286417 97286959 -62312824 + L1_Mur2 LINE L1 4344 4906 -971 5 1327 430 232 158 66 chr3 97286963 97287108 -62312675 + B3A SINE B2 1 165 -33 5 1327 1983 181 86 27 chr3 97287108 97287597 -62312186 + RLTR11A LTR ERVK 1 518 -10 5 1327 216 158 0 0 chr3 97287599 97287637 -62312146 + CT-rich Low_complexity Low_complexity 3 40 0 5 1327 414 0 0 0 chr3 97287638 97287684 -62312099 + (CA)n Simple_repeat Simple_repeat 1 46 0 5 1327 189 0 0 0 chr3 97287685 97287706 -62312077 + (GA)n Simple_repeat Simple_repeat 2 22 0 5 1327 406 174 73 0 chr3 97287963 97288072 -62311711 + MER97c DNA MER1_type? 226 342 -748 5 1327 738 78 0 0 chr3 97288478 97288593 -62311190 + (TG)n Simple_repeat Simple_repeat 2 116 0 5 1327 284 248 274 10 chr3 97288594 97288696 -62311087 - RSINE1 SINE B4 -36 129 1 5 1327 23 33 0 0 chr3 97288728 97288758 -62311025 + AT_rich Low_complexity Low_complexity 1 30 0 5 1327 947 26 0 0 chr3 97289336 97289449 -62310334 - MusHAL1 LINE L1 -632 2080 1968 5 1327 427 134 12 12 chr3 97289449 97289532 -62310251 + GA-rich Low_complexity Low_complexity 5 87 0 5 1327 669 318 132 7 chr3 97290112 97290537 -62309246 - Charlie2a DNA MER1_type -916 1945 1468 5 1327 4332 58 26 4 chr3 97290819 97291358 -62308425 - L1Md_F2 LINE L1 -12 6570 6020 5 1327 1822 37 0 0 chr3 97291358 97291573 -62308210 + L1Md_F2 LINE L1 5836 6050 -532 5 1327 434 287 0 18 chr3 97292140 97292250 -62307533 - ID_B1 SINE B4 -5 219 112 5 1327 2025 96 16 6 chr3 97292262 97292578 -62307205 - ORR1A2 LTR MaLR -8 319 1 5 1327 247 294 94 0 chr3 97292588 97292673 -62307110 - ID_B1 SINE B4 -131 93 1 5 1327 1513 214 29 136 chr3 97292773 97292879 -62306904 + RLTR20B3 LTR ERVK 1 104 -473 5 1327 4021 132 129 89 chr3 97292879 97293748 -62306035 + RMER17A2 LTR ERVK 1 904 -2 5 1327 1513 213 34 90 chr3 97293748 97294259 -62305524 + RLTR20B3 LTR ERVK 105 528 0 5 1327 659 270 16 31 chr3 97294514 97294705 -62305078 - B3A SINE B2 -6 192 5 5 1327 234 0 0 0 chr3 97294711 97294737 -62305046 + (TTG)n Simple_repeat Simple_repeat 2 27 0 5 1327 675 171 19 0 chr3 97294909 97295067 -62304716 + GA-rich Low_complexity Low_complexity 1 161 0 5 1327 1263 174 91 17 chr3 97296178 97296463 -62303320 + Lx4A LINE L1 6775 7048 -10 5 1327 279 255 199 7 chr3 97297050 97297196 -62302587 + MT2A LTR ERVL 360 533 0 5 1327 370 281 31 0 chr3 97297266 97297362 -62302421 - PB1D10 SINE Alu -17 100 2 5 1327 353 232 105 0 chr3 97297458 97297553 -62302230 - PB1D10 SINE Alu -2 115 11 5 1327 822 183 193 6 chr3 97297574 97297755 -62302028 - B3 SINE B2 -1 215 1 5 1327 334 195 0 49 chr3 97297762 97297843 -62301940 + B3 SINE B2 140 216 0 5 1327 549 272 16 48 chr3 97298566 97298755 -62301028 + B3A SINE B2 1 183 -15 5 1327 222 118 0 0 chr3 97298791 97298825 -62300958 + (CAT)n Simple_repeat Simple_repeat 1 34 0 5 1327 2141 212 50 0 chr3 97298838 97299066 -62300717 - Lx5 LINE L1 -17 7033 6795 5 1327 242 0 0 160 chr3 97299066 97299278 -62300505 + (CCCTG)n Simple_repeat Simple_repeat 3 180 0 5 1327 2141 212 50 0 chr3 97299278 97299468 -62300315 - Lx5 LINE L1 -256 6794 6595 5 1327 402 21 0 0 chr3 97299487 97299534 -62300249 + (TG)n Simple_repeat Simple_repeat 2 48 0 5 1327 5686 170 37 28 chr3 97299534 97300397 -62299386 - L1Md_F2 LINE L1 -378 5499 4638 5 1327 369 0 0 0 chr3 97300397 97300438 -62299345 + (TTTTG)n Simple_repeat Simple_repeat 2 42 0 5 1327 5686 170 37 28 chr3 97300438 97300679 -62299104 - L1Md_F2 LINE L1 -1240 4637 4387 5 1327 8329 152 40 22 chr3 97300650 97300827 -62298956 - L1Md_F2 LINE L1 -2831 3046 2868 5 1327 1172 97 11 0 chr3 97300827 97301003 -62298780 + (TTTC)n Simple_repeat Simple_repeat 3 180 0 5 1327 8470 85 22 9 chr3 97301003 97303910 -62295873 - L1Md_F2 LINE L1 0 6582 5013 5 1327 7664 68 2 10 chr3 97303934 97304494 -62295289 - L1_Mus2 LINE L1 0 6566 6015 5 1327 2248 157 17 24 chr3 97304494 97304906 -62294877 - RLTR9E LTR ERVK 0 409 1 5 1327 27471 109 66 6 chr3 97304906 97309124 -62290659 - L1_Mus2 LINE L1 -552 6014 1507 5 1327 354 23 0 0 chr3 97309124 97309167 -62290616 + (TG)n Simple_repeat Simple_repeat 2 44 0 5 1327 1172 61 7 0 chr3 97309167 97309314 -62290469 - B1_Mus1 SINE Alu 0 148 1 5 1327 27471 172 47 5 chr3 97309314 97309828 -62289955 - L1_Mus2 LINE L1 -4377 1506 985 5 1327 908 150 7 7 chr3 97310157 97310305 -62289478 + B1_Mus1 SINE Alu 1 148 0 5 1327 210 160 0 57 chr3 97310312 97310365 -62289418 + A-rich Low_complexity Low_complexity 2 51 0 5 1327 292 256 24 0 chr3 97310761 97310843 -62288940 + L1MB7 LINE L1 6083 6166 -18 5 1327 1078 89 0 0 chr3 97311762 97311900 -62287883 + B1_Mm SINE Alu 1 138 -9 5 1327 183 42 0 0 chr3 97311900 97311924 -62287859 + (CAAAC)n Simple_repeat Simple_repeat 2 25 0 5 1327 1400 89 0 16 chr3 97312812 97313006 -62286777 + B2_Mm2 SINE B2 1 191 -4 5 1327 1406 212 40 23 chr3 97313031 97313384 -62286399 - RLTR10D LTR ERVK 0 359 1 5 1327 1172 238 58 50 chr3 97313748 97314110 -62285673 + Lx8 LINE L1 7109 7473 0 5 1327 278 277 0 0 chr3 97314045 97314128 -62285655 + RMER1C Other Other 1260 1342 0 5 1327 286 265 71 10 chr3 97314879 97314978 -62284805 - RSINE1 SINE B4 -17 148 44 5 1327 532 204 53 9 chr3 97315022 97315136 -62284647 - PB1D9 SINE Alu 0 120 2 5 1327 1385 203 37 124 chr3 97315890 97316300 -62283483 + ORR1D1 LTR MaLR 1 374 0 5 1327 341 22 22 0 chr3 97316623 97316669 -62283114 + (TTTTG)n Simple_repeat Simple_repeat 2 48 0 5 1327 1124 96 0 12 chr3 97316823 97316992 -62282791 + B2_Mm2 SINE B2 2 168 -27 5 1327 226 340 30 20 chr3 97317008 97317107 -62282676 - L2b LINE L2 -194 3181 3082 5 1327 225 231 0 19 chr3 97317329 97317382 -62282401 + PB1D10 SINE Alu 30 81 -36 5 1327 401 302 56 0 chr3 97317589 97317715 -62282068 - MTE2a LTR MaLR -246 133 1 5 1327 3426 33 5 0 chr3 97318093 97318487 -62281296 + MTA_Mm LTR MaLR 1 396 0 5 1327 409 242 154 32 chr3 97319009 97319197 -62280586 + L1MA4 LINE L1 5718 5928 -372 5 1327 2620 93 80 3 chr3 97319756 97320132 -62279651 + RLTR44A LTR ERVK 1 405 0 5 1327 690 157 58 0 chr3 97320132 97320253 -62279530 + RLTR44-int LTR ERVK 1 128 -2684 5 1327 499 72 0 55 chr3 97320256 97320329 -62279454 + RLTR44-int LTR ERVK 877 945 -1867 5 1327 6734 180 26 32 chr3 97320350 97322922 -62276861 + RLTR44-int LTR ERVK 659 2812 0 5 1327 2215 101 167 3 chr3 97322922 97323270 -62276513 + RLTR44A LTR ERVK 1 405 0 5 1327 217 0 29 29 chr3 97323615 97323649 -62276134 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 5 1327 202 330 32 11 chr3 97323726 97323821 -62275962 - MIR SINE MIR -4 258 162 5 1327 571 255 28 119 chr3 97324616 97324834 -62274949 + B3A SINE B2 1 198 0 5 1327 1517 225 98 5 chr3 97327374 97327750 -62272033 + MTD LTR MaLR 1 411 -8 5 1327 719 222 98 16 chr3 97328847 97329030 -62270753 + B3A SINE B2 1 198 0 5 1327 892 213 63 15 chr3 97329984 97330189 -62269594 - B3 SINE B2 -1 215 1 5 1327 392 286 67 0 chr3 97330200 97330305 -62269478 - PB1D9 SINE Alu -7 113 2 5 1327 24 0 0 0 chr3 97330568 97330592 -62269191 + AT_rich Low_complexity Low_complexity 1 24 0 5 1327 274 207 148 11 chr3 97330895 97330983 -62268800 - L1MCa LINE L1 -4308 2443 2344 5 1327 866 191 20 66 chr3 97331153 97331349 -62268434 + B2_Mm2 SINE B2 2 188 -7 5 1327 405 232 17 35 chr3 97331849 97331965 -62267818 - L1MCa LINE L1 -4873 1878 1765 5 1327 259 226 32 0 chr3 97332067 97332129 -62267654 - ID4 SINE ID -64 88 27 5 1327 298 244 12 37 chr3 97332494 97332575 -62267208 - L1MCa LINE L1 -5556 489 411 5 1327 294 307 63 0 chr3 97332739 97332866 -62266917 - L1MCa LINE L1 -6325 426 292 5 1327 2340 194 14 46 chr3 97333265 97333784 -62265999 + RLTR16 LTR ERVK 4 505 0 5 1327 310 295 8 51 chr3 97334409 97334527 -62265256 - MTEa LTR MaLR -266 113 1 5 1327 2026 273 76 31 chr3 97334538 97335249 -62264534 - MTEa-int LTR MaLR -2 1578 836 5 1327 764 282 158 28 chr3 97335275 97335918 -62263865 - L1MCb LINE L1 -5517 1234 489 5 1327 843 208 39 0 chr3 97335949 97336127 -62263656 - B3 SINE B2 -12 204 20 5 1327 305 277 122 32 chr3 97336257 97336380 -62263403 + MTE-int LTR MaLR 919 1052 -528 5 1327 318 262 154 12 chr3 97336707 97336966 -62262817 + Charlie5 DNA MER1_type 2234 2529 -95 6 1327 686 293 21 5 chr3 97336974 97337166 -62262617 + B3A SINE B2 1 195 -3 6 1327 764 149 30 0 chr3 97337383 97337517 -62262266 - B1_Mur1 SINE Alu 0 149 12 6 1327 467 250 26 45 chr3 97337517 97337538 -62262245 - ID_B1 SINE B4 0 224 73 6 1327 351 289 7 40 chr3 97337770 97337918 -62261865 - L1MEf LINE L1 -4621 1579 1437 6 1327 246 32 0 0 chr3 97338114 97338145 -62261638 + (TTG)n Simple_repeat Simple_repeat 1 31 0 6 1327 204 40 0 0 chr3 97338145 97338170 -62261613 + (TGG)n Simple_repeat Simple_repeat 3 27 0 6 1327 255 61 0 0 chr3 97338175 97338208 -62261575 + (TCTG)n Simple_repeat Simple_repeat 2 34 0 6 1327 285 287 18 44 chr3 97338231 97338344 -62261439 - PB1D10 SINE Alu 0 117 8 6 1327 192 149 0 0 chr3 97338898 97338945 -62260838 + (TA)n Simple_repeat Simple_repeat 1 47 0 6 1327 678 218 7 39 chr3 97339197 97339350 -62260433 - B1F2 SINE Alu 0 149 2 6 1327 526 293 73 10 chr3 97339713 97339909 -62259874 - B3 SINE B2 -4 191 2 6 1327 2098 161 40 3 chr3 97340153 97340507 -62259276 - ORR1B2 LTR MaLR 0 367 1 6 1327 846 175 12 6 chr3 97340626 97340793 -62258990 - RLTR14 LTR ERV1 0 382 215 6 1327 291 336 9 0 chr3 97340793 97340900 -62258883 - RLTR14-int LTR ERV1 -316 5001 4894 6 1327 342 219 73 0 chr3 97341275 97341357 -62258426 + RLTR14 LTR ERV1 293 380 -2 6 1327 1001 201 127 46 chr3 97341408 97341715 -62258068 - IAPEY3_LTR LTR ERVK 0 332 1 6 1327 344 219 73 0 chr3 97341822 97341904 -62257879 + RLTR14 LTR ERV1 293 380 -2 6 1327 342 0 0 0 chr3 97342202 97342240 -62257543 + (TG)n Simple_repeat Simple_repeat 2 39 0 6 1327 915 290 98 3 chr3 97342275 97342590 -62257193 + MER2 DNA MER2_type 1 345 0 6 1327 399 296 53 47 chr3 97342610 97342780 -62257003 - B3 SINE B2 0 216 46 6 1327 377 295 85 0 chr3 97342872 97343001 -62256782 - ID_B1 SINE B4 -1 223 84 6 1327 213 319 14 14 chr3 97343001 97343071 -62256712 + CT-rich Low_complexity Low_complexity 3 72 0 6 1327 236 327 77 34 chr3 97343507 97343564 -62256219 - MER21B LTR ERV1 -233 630 509 6 1327 236 305 0 17 chr3 97343564 97343624 -62256159 - MER77 LTR ERVL -6 601 543 6 1327 523 278 51 19 chr3 97343634 97343792 -62255991 + RSINE1 SINE B4 3 165 0 6 1327 426 212 0 0 chr3 97343800 97343899 -62255884 + (CATATA)n Simple_repeat Simple_repeat 3 101 0 6 1327 809 320 91 20 chr3 97343920 97344370 -62255413 - MER21B LTR ERV1 -358 505 24 6 1327 351 0 0 0 chr3 97344375 97344414 -62255369 + (TG)n Simple_repeat Simple_repeat 1 39 0 6 1327 459 0 0 0 chr3 97344414 97344464 -62255319 + (GA)n Simple_repeat Simple_repeat 1 51 0 6 1327 372 238 47 23 chr3 97344931 97345060 -62254723 - Lx7 LINE L1 0 7696 7565 6 1327 349 210 114 61 chr3 97345114 97345246 -62254537 - Lx7 LINE L1 -277 7419 7281 6 1327 1223 81 16 16 chr3 97345663 97345823 -62253960 + B2_Mm2 SINE B2 2 161 -34 6 1327 213 39 0 0 chr3 97345823 97345849 -62253934 + (TAAA)n Simple_repeat Simple_repeat 1 26 0 6 1327 1223 81 16 16 chr3 97345849 97345876 -62253907 + B2_Mm2 SINE B2 162 189 -6 6 1327 273 296 0 12 chr3 97346032 97346114 -62253669 - MTE-int LTR MaLR -355 1225 1145 6 1327 672 237 9 11 chr3 97346090 97346249 -62253534 - MTD LTR MaLR -246 161 3 6 1327 1296 251 327 4 chr3 97346249 97346798 -62252985 - MTE-int LTR MaLR -852 728 2 6 1327 946 296 31 3 chr3 97346947 97347238 -62252545 - MTEa LTR MaLR -80 299 1 6 1327 888 191 0 0 chr3 97347400 97347578 -62252205 + CT-rich Low_complexity Low_complexity 1 178 0 6 1327 531 168 42 0 chr3 97347586 97347681 -62252102 - B1_Mur1 SINE Alu -18 131 33 6 1327 641 259 95 13 chr3 97347811 97348042 -62251741 + RLTR14 LTR ERV1 1 250 -132 6 1327 327 207 0 0 chr3 97348188 97348246 -62251537 - B1_Mur1 SINE Alu 0 149 92 6 1327 274 274 13 40 chr3 97348246 97348264 -62251519 - ID_B1 SINE B4 0 224 151 6 1327 403 176 70 12 chr3 97348404 97348490 -62251293 - L1MC4 LINE L1 -1008 7034 6944 6 1327 1858 284 82 44 chr3 97348671 97349917 -62249866 + Lx7 LINE L1 4616 5925 -1548 6 1327 1476 156 116 29 chr3 97350040 97350384 -62249399 - ORR1D1 LTR MaLR 0 374 1 6 1327 405 0 0 0 chr3 97351475 97351520 -62248263 + (TC)n Simple_repeat Simple_repeat 2 46 0 6 1327 217 135 39 0 chr3 97351520 97351572 -62248211 + (TG)n Simple_repeat Simple_repeat 2 55 0 6 1327 287 247 146 12 chr3 97351573 97351655 -62248128 - B1F SINE Alu -52 97 5 6 1327 608 117 41 7 chr3 97352241 97352387 -62247396 + (TA)n Simple_repeat Simple_repeat 2 152 0 6 1327 892 353 42 23 chr3 97352387 97352489 -62247294 + Lx8 LINE L1 6235 6338 -1306 6 1327 234 0 0 0 chr3 97352489 97352515 -62247268 + (GA)n Simple_repeat Simple_repeat 2 27 0 6 1327 2277 241 74 14 chr3 97352515 97353200 -62246583 + Lx8 LINE L1 6198 6924 -549 6 1327 3469 133 149 112 chr3 97353200 97354074 -62245709 - RMER17A2 LTR ERVK 0 906 1 6 1327 806 222 16 38 chr3 97354074 97354097 -62245686 + Lx8 LINE L1 6925 6941 -532 6 1327 386 259 0 0 chr3 97354102 97354183 -62245600 + Lx8 LINE L1 7167 7247 -226 6 1327 323 260 0 0 chr3 97354427 97354500 -62245283 - RLTR24 LTR ERV1 -456 73 1 6 1327 485 301 61 57 chr3 97354500 97354729 -62245054 + Lx8 LINE L1 7242 7471 -2 6 1327 617 67 0 9 chr3 97354817 97354954 -62244829 - L1Md_F3 LINE L1 0 6584 6472 6 1327 23 0 0 0 chr3 97354955 97354978 -62244805 + AT_rich Low_complexity Low_complexity 1 23 0 6 1327 244 209 57 21 chr3 97355227 97355327 -62244456 - Lx5 LINE L1 -1168 5882 5745 6 1327 3642 141 72 15 chr3 97355358 97356026 -62243757 - Lx3C LINE L1 -2 6974 6269 6 1327 662 227 56 42 chr3 97356027 97356243 -62243540 - Lx5 LINE L1 -262 5585 5367 6 1327 3413 36 8 0 chr3 97356280 97356671 -62243112 + MTA_Mm LTR MaLR 1 394 -2 6 1327 440 252 29 0 chr3 97356688 97356791 -62242992 - B4 SINE B4 -86 206 101 6 1327 848 158 6 0 chr3 97356795 97356966 -62242817 + CT-rich Low_complexity Low_complexity 4 175 0 6 1327 273 29 0 0 chr3 97356987 97357021 -62242762 + (TG)n Simple_repeat Simple_repeat 1 34 0 6 1327 2257 292 83 75 chr3 97357060 97357731 -62242052 - L1M2 LINE L1 -481 6101 5417 6 1327 579 184 0 27 chr3 97357731 97357843 -62241940 - B1_Mur1 SINE Alu -7 142 34 6 1327 2257 292 83 75 chr3 97357843 97358872 -62240911 - L1M2 LINE L1 -481 5416 4365 6 1327 297 0 0 0 chr3 97358872 97358905 -62240878 + (TTG)n Simple_repeat Simple_repeat 2 34 0 6 1327 2257 279 87 49 chr3 97358905 97359010 -62240773 - L1M2 LINE L1 -2462 4383 4247 6 1327 2272 165 31 24 chr3 97359049 97359503 -62240280 + RLTR26 LTR ERVK 2 458 -184 6 1327 672 170 0 0 chr3 97359541 97359653 -62240130 + RLTR26 LTR ERVK 531 642 0 6 1327 253 311 0 0 chr3 97359662 97359736 -62240047 - L1M2 LINE L1 -2626 4216 4143 6 1327 1116 263 94 12 chr3 97359754 97360085 -62239698 + ORR1D2 LTR MaLR 1 358 -12 6 1327 273 218 208 8 chr3 97360536 97360661 -62239122 + RMER15 LTR ERVL 410 559 -16 6 1327 555 338 45 20 chr3 97360733 97360978 -62238805 - B4A SINE B4 -41 251 1 6 1327 375 227 402 3 chr3 97360979 97361310 -62238473 - L1M2 LINE L1 -2848 3997 3535 6 1327 789 233 53 34 chr3 97361638 97361847 -62237936 - B3 SINE B2 -3 213 1 6 1327 27 0 0 0 chr3 97361853 97361880 -62237903 + AT_rich Low_complexity Low_complexity 1 27 0 6 1327 274 298 158 0 chr3 97362053 97362167 -62237616 - L1M2 LINE L1 -4547 2302 2171 6 1327 298 269 241 0 chr3 97362201 97362309 -62237474 + MLT1C LTR MaLR 334 467 0 6 1327 295 292 0 8 chr3 97362566 97362833 -62236950 + (TG)n Simple_repeat Simple_repeat 1 264 0 6 1327 499 148 214 69 chr3 97363685 97363816 -62235967 + RLTR24 LTR ERV1 380 529 0 6 1327 488 301 96 13 chr3 97363935 97364174 -62235609 - L1MA4 LINE L1 -321 5979 5721 6 1327 1147 74 0 0 chr3 97365472 97365620 -62234163 + B1_Mus1 SINE Alu 1 148 0 6 1327 356 265 22 15 chr3 97365642 97365776 -62234007 + BC1_Mm scRNA scRNA 2 136 -16 6 1327 392 0 21 0 chr3 97365900 97365948 -62233835 + (TTA)n Simple_repeat Simple_repeat 2 50 0 6 1327 504 227 36 0 chr3 97365962 97366072 -62233711 - PB1D9 SINE Alu -6 114 1 6 1327 548 263 78 28 chr3 97366122 97366263 -62233520 - RSINE1 SINE B4 -2 163 16 6 1327 673 238 119 0 chr3 97366762 97366947 -62232836 + RLTR15 LTR ERVK 1 207 -152 6 1327 283 106 0 0 chr3 97366950 97366997 -62232786 + RLTR15 LTR ERVK 313 359 0 6 1327 208 122 49 0 chr3 97367889 97367930 -62231853 + (CACCC)n Simple_repeat Simple_repeat 5 47 0 6 1327 861 136 0 0 chr3 97368087 97368227 -62231556 + (TTTC)n Simple_repeat Simple_repeat 4 143 0 6 1327 1207 104 29 0 chr3 97368227 97368400 -62231383 - B2_Mm2 SINE B2 -16 179 2 6 1327 316 257 38 9 chr3 97368882 97368988 -62230795 + RSINE1 SINE B4 28 136 -29 6 1327 351 0 0 0 chr3 97369002 97369041 -62230742 + (CA)n Simple_repeat Simple_repeat 2 40 0 6 1327 22 35 0 0 chr3 97369043 97369072 -62230711 + AT_rich Low_complexity Low_complexity 1 29 0 6 1327 235 274 78 17 chr3 97369212 97369327 -62230456 + MLT1B LTR MaLR 1 122 -268 6 1327 632 213 266 5 chr3 97369389 97369611 -62230172 + B4 SINE B4 7 286 -6 6 1327 315 0 0 0 chr3 97369623 97369658 -62230125 + (CA)n Simple_repeat Simple_repeat 1 35 0 6 1327 919 83 91 0 chr3 97369763 97369895 -62229888 - Lx5 LINE L1 -559 6491 6348 6 1327 2711 199 36 5 chr3 97369895 97370452 -62229331 + Lx5 LINE L1 6469 7042 -8 6 1327 478 267 0 24 chr3 97370831 97370954 -62228829 - PB1D7 SINE Alu 0 120 1 6 1327 301 327 89 36 chr3 97373498 97373723 -62226060 - L2a LINE L2 0 3426 3190 6 1327 404 276 37 28 chr3 97374429 97374537 -62225246 + RSINE1 SINE B4 51 159 -6 6 1327 234 91 0 0 chr3 97374539 97374572 -62225211 + (CA)n Simple_repeat Simple_repeat 1 33 0 6 1327 244 224 0 0 chr3 97374573 97374622 -62225161 + (TAGA)n Simple_repeat Simple_repeat 4 52 0 6 1327 180 111 0 0 chr3 97374842 97374869 -62224914 + (TTCTCC)n Simple_repeat Simple_repeat 6 32 0 6 1327 258 105 0 0 chr3 97375584 97375622 -62224161 + (TGAA)n Simple_repeat Simple_repeat 2 39 0 6 1327 581 176 29 0 chr3 97375759 97375861 -62223922 - PB1D10 SINE Alu -8 109 5 6 1327 28 0 0 0 chr3 97375874 97375902 -62223881 + AT_rich Low_complexity Low_complexity 1 28 0 6 1327 195 129 0 0 chr3 97375927 97375958 -62223825 + (TG)n Simple_repeat Simple_repeat 1 31 0 6 1327 420 268 40 8 chr3 97375964 97376088 -62223695 - RSINE1 SINE B4 -35 130 3 6 1327 613 200 160 16 chr3 97376109 97376297 -62223486 - B3 SINE B2 0 216 2 6 1327 2131 52 7 7 chr3 97377522 97377796 -62221987 - L1Md_F2 LINE L1 -2 6580 6307 6 1327 1073 161 17 95 chr3 97378431 97378672 -62221111 + URR1A DNA MER1_type 5 226 0 7 1327 257 182 116 43 chr3 97378986 97379055 -62220728 + HAL1 LINE L1 29 102 -2405 7 1327 267 54 0 0 chr3 97379595 97379632 -62220151 + (CAGA)n Simple_repeat Simple_repeat 2 38 0 7 1327 549 226 156 11 chr3 97380432 97380611 -62219172 + ID_B1 SINE B4 2 206 -18 7 1327 874 210 74 10 chr3 97380762 97380964 -62218819 + B3 SINE B2 2 216 0 7 1327 186 103 0 0 chr3 97381991 97382020 -62217763 + (GAAA)n Simple_repeat Simple_repeat 2 30 0 7 1327 881 198 150 0 chr3 97382139 97382326 -62217457 + B3 SINE B2 1 215 -1 7 1327 608 320 28 20 chr3 97382355 97382604 -62217179 + B4A SINE B4 42 292 0 7 1327 551 119 32 0 chr3 97382625 97382751 -62217032 + (CA)n Simple_repeat Simple_repeat 1 130 0 7 1327 302 119 0 0 chr3 97382760 97382802 -62216981 + HAL1-3A_ME LINE L1 1976 2017 -841 7 1327 378 70 42 0 chr3 97382802 97382873 -62216910 + (CA)n Simple_repeat Simple_repeat 1 74 0 7 1327 780 91 39 0 chr3 97382888 97383042 -62216741 + (CA)n Simple_repeat Simple_repeat 1 160 0 7 1327 43 0 0 0 chr3 97383401 97383444 -62216339 + AT_rich Low_complexity Low_complexity 1 43 0 7 1327 323 273 137 50 chr3 97383599 97383877 -62215906 + L1M2 LINE L1 2448 2749 -3394 7 1327 606 126 19 19 chr3 97383897 97384002 -62215781 - PB1D9 SINE Alu -7 113 9 7 1327 324 194 39 106 chr3 97383912 97384016 -62215767 - MT2B LTR ERVL -350 251 155 7 1327 4284 44 6 0 chr3 97384264 97384764 -62215019 + RLTR1C LTR ERV1 1 503 0 7 1327 234 116 0 0 chr3 97385158 97385201 -62214582 + (A)n Simple_repeat Simple_repeat 1 43 0 7 1327 760 280 92 3 chr3 97385980 97386263 -62213520 + MTE2b LTR MaLR 72 379 0 7 1328 224 225 0 0 chr3 97386497 97386537 -62213246 + (CA)n Simple_repeat Simple_repeat 2 41 0 7 1328 210 118 0 0 chr3 97387194 97387228 -62212555 + (CA)n Simple_repeat Simple_repeat 1 34 0 7 1328 589 201 28 14 chr3 97387231 97387372 -62212411 - Lx7 LINE L1 -265 7431 7289 7 1328 552 68 0 0 chr3 97387385 97387458 -62212325 + (TTCC)n Simple_repeat Simple_repeat 1 73 0 7 1328 260 346 32 0 chr3 97388867 97389014 -62210769 - MIR SINE MIR -70 192 45 7 1328 299 150 17 0 chr3 97389064 97389124 -62210659 + T-rich Low_complexity Low_complexity 5 65 0 7 1328 425 231 225 0 chr3 97390188 97390361 -62209422 + B3 SINE B2 1 212 -4 7 1328 399 41 0 0 chr3 97390543 97390592 -62209191 + (TA)n Simple_repeat Simple_repeat 2 50 0 7 1328 676 132 0 0 chr3 97392744 97392858 -62206925 + Lx LINE L1 6541 6654 0 7 1328 857 200 23 60 chr3 97392968 97393186 -62206597 + B3 SINE B2 1 210 -6 7 1328 213 39 0 0 chr3 97393196 97393222 -62206561 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 7 1328 433 207 50 33 chr3 97393254 97393374 -62206409 + B4 SINE B4 1 122 -170 7 1328 263 147 29 0 chr3 97394072 97394140 -62205643 + (CAGAGA)n Simple_repeat Simple_repeat 3 72 0 7 1328 639 229 63 6 chr3 97395380 97395538 -62204245 - Tigger5 DNA MER2_type -5 2401 2235 7 1328 641 258 15 0 chr3 97395561 97395693 -62204090 + RSINE1 SINE B4 3 136 -29 7 1328 333 0 0 0 chr3 97395701 97395738 -62204045 + (CA)n Simple_repeat Simple_repeat 2 38 0 7 1328 336 242 177 42 chr3 97395906 97396143 -62203640 - L1MA5 LINE L1 -462 5838 5570 7 1328 1104 207 9 0 chr3 97396257 97396470 -62203313 - B3 SINE B2 0 216 2 7 1328 298 184 0 0 chr3 97396470 97396519 -62203264 - L1M4 LINE L1 -738 5440 5392 7 1328 275 301 29 0 chr3 97396674 97396777 -62203006 + L1MA6 LINE L1 6183 6288 -12 7 1328 306 0 0 0 chr3 97397578 97397612 -62202171 + (CA)n Simple_repeat Simple_repeat 2 35 0 7 1328 652 133 26 0 chr3 97399720 97399833 -62199950 - B1_Mur2 SINE Alu 0 149 34 7 1328 441 223 190 30 chr3 97400187 97400431 -62199352 + MLT1A1 LTR MaLR 84 404 -4 7 1328 784 281 78 26 chr3 97401271 97401578 -62198205 + L1MC1 LINE L1 5995 6317 -16 7 1328 214 284 135 0 chr3 97402016 97402090 -62197693 - MIRc SINE MIR -132 136 53 7 1328 228 214 74 63 chr3 97402309 97402404 -62197379 + YREP_Mm Unknown Unknown 199 294 -1518 7 1328 458 207 35 0 chr3 97402331 97402418 -62197365 - B1F SINE Alu -51 98 9 7 1328 387 297 72 0 chr3 97402623 97402761 -62197022 + B1F1 SINE Alu 1 148 -1 7 1328 425 215 65 20 chr3 97402933 97403052 -62196731 - RSINE1 SINE B4 -23 142 22 7 1328 894 218 107 8 chr3 97403894 97404231 -62195552 + MTD LTR MaLR 18 418 -1 7 1328 276 30 0 0 chr3 97404324 97404357 -62195426 + (TG)n Simple_repeat Simple_repeat 1 33 0 7 1328 1616 136 201 15 chr3 97404382 97404710 -62195073 + ORR1B1 LTR MaLR 4 392 -2 7 1328 390 21 0 0 chr3 97404766 97404813 -62194970 + (TG)n Simple_repeat Simple_repeat 1 47 0 7 1328 306 98 0 0 chr3 97404815 97404866 -62194917 + (CAGAGA)n Simple_repeat Simple_repeat 2 52 0 7 1328 534 235 33 88 chr3 97404980 97405162 -62194621 - B3A SINE B2 -26 172 1 7 1328 272 336 31 79 chr3 97405276 97405505 -62194278 + B4 SINE B4 1 218 -74 7 1328 1493 203 138 24 chr3 97406232 97406610 -62193173 + MTC LTR MaLR 1 421 0 7 1328 578 318 75 78 chr3 97409489 97409820 -62189963 + ORR1E LTR MaLR 8 337 -22 7 1328 542 282 120 14 chr3 97409821 97410030 -62189753 + ORR1E-int LTR MaLR 1 231 -1349 7 1328 621 229 75 27 chr3 97410075 97410263 -62189520 + L1MD1 LINE L1 6041 6237 -5 7 1328 546 233 45 64 chr3 97410283 97410485 -62189298 - B3A SINE B2 0 198 1 7 1328 246 325 0 13 chr3 97410575 97410653 -62189130 - LTR33B LTR ERVL -39 464 388 7 1328 1013 215 34 5 chr3 97411283 97411489 -62188294 + B3 SINE B2 2 213 -3 7 1328 401 100 0 62 chr3 97411853 97411917 -62187866 + Lx9 LINE L1 6797 6856 -788 7 1328 884 225 139 4 chr3 97411914 97412159 -62187624 + Lx9 LINE L1 6182 6459 -1185 7 1328 415 191 261 9 chr3 97412299 97412410 -62187373 + Lx9 LINE L1 6449 6587 -1057 7 1328 2125 215 117 4 chr3 97412415 97412928 -62186855 + Lx9 LINE L1 6927 7497 -147 7 1328 755 162 28 21 chr3 97413146 97413291 -62186492 - B1_Mm SINE Alu 0 147 2 7 1328 23 33 0 0 chr3 97413951 97413981 -62185802 + GC_rich Low_complexity Low_complexity 1 30 0 7 1328 452 163 11 11 chr3 97414549 97414636 -62185147 + PB1D10 SINE Alu 10 96 -21 7 1328 582 246 156 6 chr3 97414662 97414842 -62184941 + ID_B1 SINE B4 15 221 -3 7 1328 249 286 92 14 chr3 97416198 97416340 -62183443 - L2 LINE L2 -612 2807 2655 7 1328 527 265 65 28 chr3 97416511 97416728 -62183055 + L1MA5 LINE L1 5512 5736 -564 7 1328 5877 123 90 6 chr3 97416765 97417863 -62181920 + RMER12B LTR ERVK 90 1260 -144 7 1328 392 171 0 12 chr3 97417957 97418040 -62181743 + (TA)n Simple_repeat Simple_repeat 1 82 0 7 1328 371 214 156 11 chr3 97418043 97418133 -62181650 - PB1D10 SINE Alu -8 109 7 7 1328 679 263 32 0 chr3 97418133 97418323 -62181460 + L1MA5 LINE L1 5789 5984 -316 7 1328 576 245 228 2 chr3 97418323 97418601 -62181182 - ORR1D2 LTR MaLR 0 370 9 7 1328 453 281 70 15 chr3 97418601 97418861 -62180922 + L1MA5 LINE L1 5992 6256 -44 7 1328 21 0 0 0 chr3 97419500 97419521 -62180262 + AT_rich Low_complexity Low_complexity 1 21 0 7 1328 226 34 83 33 chr3 97419545 97419605 -62180178 + (TTTG)n Simple_repeat Simple_repeat 2 64 0 7 1328 321 47 0 0 chr3 97419631 97419674 -62180109 + (TTTTG)n Simple_repeat Simple_repeat 2 44 0 7 1328 840 57 65 0 chr3 97419674 97419797 -62179986 - B1_Mur4 SINE Alu -10 140 10 7 1328 446 208 168 0 chr3 97419994 97420095 -62179688 - Lx8 LINE L1 -333 7140 7023 7 1328 743 262 60 37 chr3 97420095 97420313 -62179470 - Lx8 LINE L1 -672 6801 6579 7 1328 315 0 0 0 chr3 97421257 97421292 -62178491 + (T)n Simple_repeat Simple_repeat 1 35 0 7 1328 827 52 0 0 chr3 97421292 97421407 -62178376 - B1_Mm SINE Alu 0 147 33 7 1328 579 122 0 0 chr3 97421445 97421535 -62178248 + (CA)n Simple_repeat Simple_repeat 2 91 0 7 1328 207 88 0 0 chr3 97422559 97422593 -62177190 + (TTTA)n Simple_repeat Simple_repeat 4 37 0 7 1328 631 238 13 33 chr3 97422593 97422745 -62177038 - RSINE1 SINE B4 -15 150 2 7 1328 339 65 0 0 chr3 97424271 97424317 -62175466 + (TTGG)n Simple_repeat Simple_repeat 2 47 0 7 1328 296 278 0 0 chr3 97425337 97425409 -62174374 - RLTR42-int LTR ERVK -3915 1607 1536 7 1328 960 143 62 22 chr3 97425458 97425637 -62174146 + B2_Mm2 SINE B2 1 186 -9 7 1328 227 200 0 0 chr3 97425659 97425709 -62174074 + (ATG)n Simple_repeat Simple_repeat 3 52 0 7 1328 1204 158 181 67 chr3 97426006 97426152 -62173631 - ORR1D1 LTR MaLR -5 369 165 7 1328 249 33 0 0 chr3 97426152 97426182 -62173601 + (GA)n Simple_repeat Simple_repeat 1 30 0 7 1328 1204 158 181 67 chr3 97426182 97426366 -62173417 - ORR1D1 LTR MaLR -210 164 1 7 1328 229 217 36 12 chr3 97426736 97426820 -62172963 + (TTATA)n Simple_repeat Simple_repeat 3 88 0 7 1328 360 333 99 24 chr3 97427000 97427252 -62172531 + B4A SINE B4 3 273 -19 7 1328 195 100 0 0 chr3 97427646 97427676 -62172107 + (CA)n Simple_repeat Simple_repeat 1 30 0 7 1328 1502 50 0 6 chr3 97427829 97428009 -62171774 - B2_Mm2 SINE B2 -14 181 3 7 1328 24 32 0 0 chr3 97428863 97428894 -62170889 + AT_rich Low_complexity Low_complexity 1 31 0 7 1328 8528 79 29 22 chr3 97429466 97430743 -62169040 - MusHAL1 LINE L1 -626 2086 801 7 1328 654 220 59 95 chr3 97431092 97431313 -62168470 + B3 SINE B2 1 213 -3 7 1328 567 229 13 65 chr3 97431387 97431541 -62168242 + MTEa LTR MaLR 7 152 -227 7 1328 203 0 0 36 chr3 97432279 97432307 -62167476 + (CCCCCA)n Simple_repeat Simple_repeat 3 29 0 7 1328 261 75 0 0 chr3 97433330 97433370 -62166413 + (A)n Simple_repeat Simple_repeat 1 40 0 7 1328 931 236 39 0 chr3 97433507 97433715 -62166068 + B3 SINE B2 1 216 0 7 1328 260 256 12 71 chr3 97433736 97433820 -62165963 + B4A SINE B4 1 79 -213 7 1328 213 154 0 0 chr3 97433822 97433861 -62165922 + GA-rich Low_complexity Low_complexity 2 40 0 8 1328 189 0 0 0 chr3 97433864 97433885 -62165898 + (GGGAA)n Simple_repeat Simple_repeat 4 24 0 8 1328 507 302 28 16 chr3 97433910 97434092 -62165691 + B4A SINE B4 109 292 0 7 1328 235 246 16 0 chr3 97434103 97434164 -62165619 + GA-rich Low_complexity Low_complexity 1 62 0 8 1328 297 0 0 0 chr3 97434170 97434203 -62165580 + (CA)n Simple_repeat Simple_repeat 2 34 0 8 1328 1714 32 5 18 chr3 97434424 97434645 -62165138 + L1Md_F3 LINE L1 6364 6581 -3 8 1328 463 220 17 52 chr3 97434650 97434765 -62165018 + PB1D9 SINE Alu 1 111 -9 8 1328 214 281 102 16 chr3 97435169 97435311 -62164472 + MIRb SINE MIR 1 171 -97 8 1328 405 272 0 0 chr3 97436219 97436300 -62163483 + B1_Mur3 SINE Alu 1 81 -68 8 1328 612 233 45 0 chr3 97436323 97436456 -62163327 + B1_Mur2 SINE Alu 1 139 -10 8 1328 354 23 0 0 chr3 97436456 97436499 -62163284 + (CATA)n Simple_repeat Simple_repeat 4 46 0 8 1328 741 278 146 64 chr3 97437096 97437611 -62162172 - L1MC3 LINE L1 -95 7690 7134 8 1328 344 286 88 25 chr3 97437662 97437787 -62161996 - L1MC LINE L1 -1574 4572 4444 8 1328 1373 106 0 0 chr3 97437787 97437976 -62161807 - B2_Mm2 SINE B2 -6 189 1 8 1328 344 286 88 25 chr3 97437976 97438090 -62161693 - L1MC LINE L1 -1703 4443 4319 8 1328 403 244 125 8 chr3 97438091 97438219 -62161564 - B1F SINE Alu -6 143 1 8 1328 355 299 93 167 chr3 97438234 97438444 -62161339 - B4 SINE B4 0 292 81 8 1328 978 141 79 0 chr3 97438444 97438621 -62161162 - B2_Mm2 SINE B2 -2 193 3 8 1328 355 299 93 167 chr3 97438621 97438679 -62161104 - B4 SINE B4 -212 80 44 8 1328 500 271 87 35 chr3 97438718 97439028 -62160755 - L1MC LINE L1 -1847 4299 3952 8 1328 24 0 0 0 chr3 97439039 97439063 -62160720 + AT_rich Low_complexity Low_complexity 1 24 0 8 1328 21 0 0 0 chr3 97440459 97440480 -62159303 + AT_rich Low_complexity Low_complexity 1 21 0 8 1328 325 274 55 48 chr3 97440531 97440719 -62159064 - L2c LINE L2 -185 3190 3010 8 1328 421 211 0 0 chr3 97443065 97443141 -62156642 - B3A SINE B2 -121 77 2 8 1328 226 336 131 22 chr3 97444056 97444193 -62155590 + MIRb SINE MIR 72 223 -45 8 1328 206 32 0 31 chr3 97444467 97444499 -62155284 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 8 1328 575 292 20 0 chr3 97444543 97444690 -62155093 - RSINE1 SINE B4 -15 150 1 8 1328 1293 160 0 89 chr3 97444846 97444942 -62154841 + URR1B DNA MER1_type 1 82 -143 8 1328 1576 99 47 4 chr3 97444942 97445196 -62154587 + L1_Mus4 LINE L1 6370 6634 -2 8 1328 1293 160 0 89 chr3 97445196 97445346 -62154437 + URR1B DNA MER1_type 83 225 0 8 1328 21 0 0 0 chr3 97446237 97446258 -62153525 + GC_rich Low_complexity Low_complexity 1 21 0 8 1328 377 283 28 9 chr3 97446388 97446495 -62153288 + B4A SINE B4 79 187 -105 8 1328 773 238 12 30 chr3 97446682 97446847 -62152936 + RSINE1 SINE B4 3 164 -1 8 1328 243 0 0 0 chr3 97446851 97446878 -62152905 + (GA)n Simple_repeat Simple_repeat 2 28 0 8 1328 211 342 44 83 chr3 97446878 97446906 -62152877 + B3A SINE B2 170 196 -2 8 1328 345 315 18 9 chr3 97447062 97447171 -62152612 - RSINE1 SINE B4 -51 114 5 8 1328 267 294 52 128 chr3 97447181 97447563 -62152220 - L1MC4 LINE L1 0 8042 7690 8 1328 651 268 33 23 chr3 97447840 97448054 -62151729 + B3 SINE B2 1 216 0 8 1328 926 151 200 6 chr3 97448120 97448300 -62151483 + B3 SINE B2 2 216 0 8 1328 1336 47 47 6 chr3 97448612 97448783 -62151000 + B2_Mm2 SINE B2 1 178 -17 8 1328 353 335 55 24 chr3 97448898 97449063 -62150720 + MIRc SINE MIR 77 246 -22 8 1328 220 98 62 68 chr3 97449930 97450106 -62149677 + (CTATA)n Simple_repeat Simple_repeat 1 175 0 8 1328 200 95 61 68 chr3 97450140 97450287 -62149496 + (CTATA)n Simple_repeat Simple_repeat 1 146 0 8 1328 345 356 53 20 chr3 97450395 97450547 -62149236 - MER5B DNA MER1_type -1 177 21 8 1328 1258 125 86 9 chr3 97450687 97450897 -62148886 + URR1A DNA MER1_type 1 226 0 8 1328 845 212 100 5 chr3 97451209 97451399 -62148384 + B3 SINE B2 2 209 -7 8 1328 345 341 46 23 chr3 97451446 97451620 -62148163 + L3 LINE CR1 4116 4293 -196 8 1328 322 358 163 27 chr3 97452348 97452753 -62147030 + L3 LINE CR1 3976 4435 -54 8 1328 2175 182 55 21 chr3 97453267 97453824 -62145959 + Lx9 LINE L1 7041 7644 0 8 1328 239 245 57 0 chr3 97453900 97453953 -62145830 - MER46C DNA MER2_type -11 327 272 8 1328 333 0 0 0 chr3 97454140 97454177 -62145606 + (TG)n Simple_repeat Simple_repeat 2 38 0 8 1328 695 98 181 1 chr3 97454186 97454315 -62145468 - B2_Mm2 SINE B2 -57 159 1 8 1328 718 102 17 0 chr3 97455858 97455976 -62143807 + (TC)n Simple_repeat Simple_repeat 1 120 0 8 1328 194 156 152 22 chr3 97456427 97456473 -62143310 + L2c LINE L2 3335 3386 -1 8 1328 38 51 0 0 chr3 97456543 97456602 -62143181 + AT_rich Low_complexity Low_complexity 1 59 0 8 1328 346 298 11 11 chr3 97456612 97456707 -62143076 - B4A SINE B4 -197 95 1 8 1328 634 253 7 14 chr3 97456739 97456887 -62142896 + B1F1 SINE Alu 3 149 0 8 1328 1214 279 180 25 chr3 97458023 97458828 -62140955 + L1MC3 LINE L1 6825 7754 -31 8 1328 233 182 123 35 chr3 97458922 97458979 -62140804 + B4 SINE B4 20 81 -211 8 1328 849 207 28 17 chr3 97458931 97459108 -62140675 + B3 SINE B2 35 213 -3 8 1328 604 148 129 30 chr3 97459669 97459801 -62139982 - B1_Mus2 SINE Alu -1 146 2 8 1328 274 250 0 53 chr3 97459906 97459982 -62139801 + L2a LINE L2 3354 3425 -1 8 1328 375 256 114 46 chr3 97460344 97460475 -62139308 + L2 LINE L2 663 802 -2617 8 1328 386 381 42 80 chr3 97460507 97460682 -62139101 - MLT1J LTR MaLR -3 509 339 8 1328 973 118 15 0 chr3 97460682 97460818 -62138965 - B1_Mur2 SINE Alu -11 138 1 8 1328 386 381 42 80 chr3 97460818 97460930 -62138853 - MLT1J LTR MaLR -174 338 233 8 1328 681 186 263 0 chr3 97461127 97461283 -62138500 - B3 SINE B2 -15 201 5 8 1328 353 339 68 11 chr3 97461292 97461483 -62138300 + L2 LINE L2 853 1054 -2365 8 1328 311 183 26 78 chr3 97461806 97461883 -62137900 - MER5A1 DNA MER1_type -38 128 56 8 1328 24 32 0 0 chr3 97462431 97462462 -62137321 + GC_rich Low_complexity Low_complexity 1 31 0 8 1328 192 321 0 19 chr3 97464394 97464448 -62135335 - MER5B DNA MER1_type 0 178 126 8 1328 223 328 14 56 chr3 97464646 97464717 -62135066 + ID_B1 SINE B4 73 140 -84 8 1328 228 283 92 20 chr3 97464666 97464769 -62135014 + PB1 SINE Alu 10 120 0 8 1328 421 276 101 27 chr3 97465214 97465363 -62134420 - MER58A DNA MER1_type -3 221 62 8 1328 297 208 13 53 chr3 97465659 97465735 -62134048 - ID2 SINE ID -9 74 2 8 1328 238 106 0 41 chr3 97466770 97466819 -62132964 + (TG)n Simple_repeat Simple_repeat 2 48 0 8 1328 536 300 128 30 chr3 97466824 97467089 -62132694 - B4A SINE B4 0 292 2 8 1328 853 57 186 0 chr3 97467105 97467229 -62132554 + B1_Mus1 SINE Alu 2 148 0 8 1328 210 71 0 0 chr3 97467229 97467257 -62132526 + (A)n Simple_repeat Simple_repeat 1 28 0 8 1328 234 174 0 0 chr3 97468026 97468072 -62131711 + (CA)n Simple_repeat Simple_repeat 1 46 0 8 1328 950 290 77 41 chr3 97469483 97469975 -62129808 - L1MB7 LINE L1 -231 5953 5444 8 1328 249 313 159 38 chr3 97470135 97470305 -62129478 - MIRm SINE MIR -71 197 6 8 1328 217 323 32 21 chr3 97472113 97472208 -62127575 - MIR SINE MIR -65 197 102 8 1328 1150 272 86 20 chr3 97473230 97473583 -62126200 + MTE2a LTR MaLR 1 420 -1 8 1328 211 194 0 0 chr3 97476675 97476711 -62123072 + (TG)n Simple_repeat Simple_repeat 1 36 0 8 1328 237 321 107 54 chr3 97477958 97478126 -62121657 + MER5B DNA MER1_type 1 177 -1 8 1328 2226 102 19 0 chr3 97478198 97478511 -62121272 - ORR1A2 LTR MaLR -8 319 1 8 1328 2400 198 127 55 chr3 97478599 97478928 -62120855 - RMER19A LTR ERVK 0 737 362 8 1328 1381 60 43 21 chr3 97478928 97479115 -62120668 - B2_Mm2 SINE B2 -4 191 1 8 1328 2400 198 127 55 chr3 97479115 97479421 -62120362 - RMER19A LTR ERVK -376 361 57 8 1328 267 303 52 13 chr3 97479866 97479943 -62119840 + B4 SINE B4 2 81 -211 8 1328 274 228 99 15 chr3 97480014 97480139 -62119644 - L1M2 LINE L1 -1462 4678 4550 8 1328 405 303 139 94 chr3 97480330 97480669 -62119114 - L1M2 LINE L1 -1656 4487 4134 8 1328 1744 210 102 20 chr3 97480933 97481375 -62118408 + RLTR11A2 LTR ERVK 5 482 -45 8 1328 321 267 172 26 chr3 97481672 97481864 -62117919 - Lx9 LINE L1 -80 7564 7345 8 1328 1522 281 40 36 chr3 97481880 97482434 -62117349 - Lx9 LINE L1 -369 7275 6720 8 1328 689 279 102 13 chr3 97482436 97482661 -62117122 - B4A SINE B4 -38 254 10 8 1328 1201 239 175 11 chr3 97482685 97483126 -62116657 - Lx8 LINE L1 0 7473 6961 8 1328 229 245 20 0 chr3 97483617 97483666 -62116117 - ORR1E LTR MaLR -41 318 269 8 1328 288 264 11 144 chr3 97483721 97483902 -62115881 - ORR1E LTR MaLR -107 252 96 8 1328 729 155 108 8 chr3 97484148 97484278 -62115505 + B1_Mur3 SINE Alu 7 149 0 8 1328 626 42 0 0 chr3 97485381 97485453 -62114330 + tRNA-Gln-CAG tRNA tRNA 1 72 -3 8 1328 225 0 0 0 chr3 97486673 97486698 -62113085 + (A)n Simple_repeat Simple_repeat 1 25 0 8 1328 229 222 0 0 chr3 97486857 97486902 -62112881 - MTD LTR MaLR -1 378 334 8 1328 289 267 62 106 chr3 97486936 97487014 -62112769 - MIRb SINE MIR -64 204 135 8 1328 837 26 17 0 chr3 97487014 97487130 -62112653 + L1Md_F3 LINE L1 6467 6584 0 8 1328 289 267 62 106 chr3 97487130 97487164 -62112619 - MIRb SINE MIR -134 134 97 8 1328 917 261 142 34 chr3 97487234 97487559 -62112224 - MTD LTR MaLR -59 360 1 8 1328 318 278 0 0 chr3 97487794 97487866 -62111917 - tRNA-Gln-CAG tRNA tRNA -3 72 1 8 1328 1058 170 258 27 chr3 97488024 97488357 -62111426 + RMER17C LTR ERVK 1 410 0 8 1328 807 142 0 0 chr3 97488888 97489022 -62110761 + (TTCC)n Simple_repeat Simple_repeat 4 137 0 8 1328 1250 80 108 0 chr3 97489022 97489198 -62110585 - B2_Mm2 SINE B2 0 195 1 8 1328 1041 73 73 0 chr3 97489383 97489520 -62110263 + B1_Mus1 SINE Alu 2 148 0 8 1328 444 37 0 0 chr3 97489662 97489716 -62110067 + (TG)n Simple_repeat Simple_repeat 1 54 0 8 1328 715 127 91 46 chr3 97490026 97490247 -62109536 + RMER6A LTR ERVK 206 465 -225 9 1328 533 176 0 9 chr3 97490962 97491071 -62108712 + CT-rich Low_complexity Low_complexity 1 108 0 9 1328 749 232 40 7 chr3 97491356 97491508 -62108275 - RSINE1 SINE B4 -6 159 3 9 1328 447 291 98 5 chr3 97491511 97491729 -62108054 - L1MA9 LINE L1 -129 6205 5952 9 1328 386 276 11 0 chr3 97491919 97492006 -62107777 - B3 SINE B2 -88 128 41 9 1328 215 178 0 118 chr3 97491961 97492012 -62107771 - RSINE1 SINE B4 -79 86 42 9 1328 225 83 0 0 chr3 97492020 97492056 -62107727 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 9 1328 1124 70 0 14 chr3 97492056 97492202 -62107581 - B1_Mus1 SINE Alu -4 144 1 9 1328 785 184 62 42 chr3 97492213 97492406 -62107377 - B3A SINE B2 0 198 2 9 1328 330 228 0 0 chr3 97492430 97492531 -62107252 + CT-rich Low_complexity Low_complexity 3 103 0 9 1328 201 143 0 0 chr3 97492845 97492880 -62106903 + (CTA)n Simple_repeat Simple_repeat 3 37 0 9 1328 587 14 14 0 chr3 97492880 97492952 -62106831 + (TTTC)n Simple_repeat Simple_repeat 3 75 0 9 1328 1064 129 0 11 chr3 97492954 97493134 -62106649 + (TTC)n Simple_repeat Simple_repeat 1 178 0 9 1328 335 78 0 19 chr3 97493134 97493186 -62106597 + (TCC)n Simple_repeat Simple_repeat 2 52 0 9 1328 1184 83 53 6 chr3 97496780 97496950 -62102833 + B2_Mm2 SINE B2 3 180 -15 9 1328 252 0 0 0 chr3 97496951 97496979 -62102804 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 9 1328 749 335 27 27 chr3 97499255 97499553 -62100230 + MTE2a LTR MaLR 82 379 0 9 1328 180 239 108 40 chr3 97500290 97500364 -62099419 + MER5A DNA MER1_type 5 83 -106 1 1328 189 294 37 56 chr3 97500541 97500649 -62099134 - MIRb SINE MIR -44 224 119 2 1328 281 345 142 40 chr3 97501668 97501943 -62097840 - MER46C DNA MER2_type -26 312 10 3 1328 459 0 0 0 chr3 97502021 97502072 -62097711 + (TG)n Simple_repeat Simple_repeat 1 51 0 4 1328 315 0 0 0 chr3 97502325 97502360 -62097423 + (CA)n Simple_repeat Simple_repeat 1 35 0 5 1328 428 242 279 0 chr3 97502360 97502521 -62097262 - Lx9 LINE L1 -189 7455 7250 6 1328 211 376 95 47 chr3 97504141 97504331 -62095452 - L3 LINE CR1 -1278 3211 3013 7 1328 1340 163 18 9 chr3 97505108 97505331 -62094452 - URR1B DNA MER1_type 0 225 1 8 1328 988 106 119 0 chr3 97507889 97508040 -62091743 + URR1A DNA MER1_type 1 169 -57 9 1328 426 256 90 66 chr3 97507892 97508059 -62091724 - CYRA11_Mm Unknown Y-chromosome -234 383 213 1 1328 214 158 0 0 chr3 97508316 97508354 -62091429 + G-rich Low_complexity Low_complexity 1 38 0 1 1328 429 20 0 0 chr3 97508603 97508653 -62091130 + (CA)n Simple_repeat Simple_repeat 1 50 0 1 1328 213 119 0 0 chr3 97509864 97509906 -62089877 + (CAAAAA)n Simple_repeat Simple_repeat 6 47 0 1 1328 3262 46 2 10 chr3 97512631 97513030 -62086753 + MTA_Mm LTR MaLR 1 396 0 1 1328 289 272 19 25 chr3 97515524 97515686 -62084097 + (TATG)n Simple_repeat Simple_repeat 3 163 0 1 1328 984 277 7 65 chr3 97515755 97516064 -62083719 - B4 SINE B4 0 292 2 1 1328 227 310 79 2 chr3 97516537 97516637 -62083146 - B1F1 SINE Alu -9 108 2 1 1328 1221 62 0 0 chr3 97516715 97516861 -62082922 + B1_Mus1 SINE Alu 3 148 0 1 20 3186 41 10 18 chr3 97517358 97517757 -62082026 + MTA_Mm LTR MaLR 1 396 0 1 1329 261 297 43 32 chr3 97518057 97518151 -62081632 + MLT1H2 LTR MaLR 1 95 -484 2 1329 266 262 212 0 chr3 97518465 97518545 -62081238 + MLT1H2 LTR MaLR 380 476 -13 2 1329 445 301 134 0 chr3 97518614 97518830 -62080953 - MIR SINE MIR -16 246 2 2 1329 1311 99 5 25 chr3 97519928 97520124 -62079659 + B2_Mm2 SINE B2 3 194 -1 2 1329 293 212 45 45 chr3 97520368 97520457 -62079326 - MIR SINE MIR -68 194 106 2 1329 1058 204 10 5 chr3 97521662 97521869 -62077914 - B3 SINE B2 0 216 9 2 1329 704 146 169 8 chr3 97522702 97522826 -62076957 + B1_Mus2 SINE Alu 2 145 -2 2 1329 701 79 10 0 chr3 97522826 97522927 -62076856 + (GA)n Simple_repeat Simple_repeat 2 103 0 2 1329 1107 70 14 0 chr3 97523715 97523857 -62075926 - B1_Mus1 SINE Alu -3 145 2 2 1329 247 322 88 22 chr3 97524277 97524458 -62075325 + L2a LINE L2 3233 3425 -1 2 1329 333 0 0 0 chr3 97524489 97524526 -62075257 + (CA)n Simple_repeat Simple_repeat 2 38 0 2 1329 1210 22 0 0 chr3 97524886 97525024 -62074759 + B1_Mm SINE Alu 1 138 -9 3 1329 275 0 0 28 chr3 97525024 97525060 -62074723 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 3 1329 318 290 9 99 chr3 97525352 97525463 -62074320 - B4A SINE B4 0 292 192 3 1329 4566 167 50 17 chr3 97525580 97526446 -62073337 + RLTR25A LTR ERVK 3 896 -207 3 1329 778 233 136 57 chr3 97526500 97526764 -62073019 + RLTR25B LTR ERVK 742 1026 -2 3 1329 305 333 37 9 chr3 97526928 97527037 -62072746 - RLTR22_Mur LTR ERVK -147 1701 1590 3 1329 1619 221 26 23 chr3 97527114 97527504 -62072279 - RLTR22_Mur LTR ERVK -1043 805 415 3 1329 346 246 41 66 chr3 97527537 97527659 -62072124 + RLTR23 LTR ERV1 306 424 -6 3 1329 378 0 0 0 chr3 97528484 97528526 -62071257 + (CA)n Simple_repeat Simple_repeat 1 42 0 3 1329 371 280 11 0 chr3 97529249 97529342 -62070441 - ID_B1 SINE B4 -38 186 93 3 1329 204 292 108 0 chr3 97529640 97529705 -62070078 - L3 LINE CR1 -890 3599 3528 4 1329 495 214 39 0 chr3 97530135 97530238 -62069545 + PB1D10 SINE Alu 2 108 -9 4 1329 220 300 43 0 chr3 97530500 97530570 -62069213 - MIR3 SINE MIR -11 197 125 4 1329 228 268 143 0 chr3 97530655 97530711 -62069072 + RMER30 DNA MER1_type 139 202 0 4 1329 363 44 0 0 chr3 97531285 97531330 -62068453 + (CA)n Simple_repeat Simple_repeat 2 46 0 4 1329 895 252 101 147 chr3 97531380 97531611 -62068172 + L1MA7 LINE L1 5593 5872 -419 4 1329 2374 157 68 5 chr3 97531611 97532026 -62067757 - BGLII_B LTR ERVK 0 441 1 4 1329 895 252 101 147 chr3 97532026 97532509 -62067274 + L1MA7 LINE L1 5873 6274 -17 4 1329 504 0 0 0 chr3 97535261 97535317 -62064466 + (TG)n Simple_repeat Simple_repeat 2 57 0 4 1329 275 216 0 0 chr3 97535722 97535773 -62064010 + MER3 DNA MER1_type 158 208 -1 4 1329 282 268 0 0 chr3 97535731 97535787 -62063996 - MER3 DNA MER1_type -119 90 35 4 1329 1057 161 15 20 chr3 97537017 97537213 -62062570 + B2_Mm2 SINE B2 1 195 0 5 1329 833 222 50 28 chr3 97537453 97537671 -62062112 + ID_B1 SINE B4 2 224 0 5 1329 789 134 23 17 chr3 97539158 97539332 -62060451 + CT-rich Low_complexity Low_complexity 4 178 0 5 1329 241 110 61 0 chr3 97539325 97539407 -62060376 + (TCTCTG)n Simple_repeat Simple_repeat 2 88 0 5 1329 345 223 0 103 chr3 97542373 97542495 -62057288 + ID4 SINE ID 4 116 -36 5 1329 27 0 0 0 chr3 97542785 97542812 -62056971 + AT_rich Low_complexity Low_complexity 1 27 0 5 1329 28 0 0 0 chr3 97543728 97543756 -62056027 + AT_rich Low_complexity Low_complexity 1 28 0 5 1329 658 203 72 0 chr3 97544208 97544346 -62055437 + B1_Mur1 SINE Alu 1 148 -1 5 1329 943 208 38 24 chr3 97549030 97549225 -62050558 + B3 SINE B2 2 203 -13 5 1329 209 57 0 28 chr3 97549225 97549261 -62050522 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 5 1329 943 208 38 24 chr3 97549261 97549277 -62050506 + B3 SINE B2 204 216 0 5 1329 210 150 0 0 chr3 97551227 97551267 -62048516 + (A)n Simple_repeat Simple_repeat 1 40 0 6 1329 830 174 151 5 chr3 97551944 97552129 -62047654 - B3 SINE B2 0 216 5 6 1329 659 298 34 0 chr3 97552951 97553129 -62046654 + Lx8 LINE L1 6763 6946 -527 6 1329 803 275 138 25 chr3 97553123 97553477 -62046306 + Lx8 LINE L1 7055 7448 -25 6 1329 389 297 50 0 chr3 97553606 97553707 -62046076 + Lx8 LINE L1 7184 7289 -184 6 1329 491 301 40 14 chr3 97554006 97554154 -62045629 + RSINE1 SINE B4 5 156 -9 6 1329 535 196 21 0 chr3 97554759 97554856 -62044927 + B1F SINE Alu 1 99 -50 6 1329 516 241 65 36 chr3 97555195 97555333 -62044450 + B1F1 SINE Alu 3 144 -5 6 1329 180 176 0 0 chr3 97555333 97555367 -62044416 + GA-rich Low_complexity Low_complexity 1 34 0 6 1329 330 274 17 34 chr3 97556289 97556406 -62043377 + PB1D10 SINE Alu 3 117 0 6 1329 713 193 0 82 chr3 97557190 97557348 -62042435 + B1_Mm SINE Alu 3 147 0 6 1329 204 40 0 0 chr3 97557376 97557401 -62042382 + (GA)n Simple_repeat Simple_repeat 1 25 0 7 1329 699 172 27 14 chr3 97558699 97558846 -62040937 + B1F2 SINE Alu 1 149 0 7 1329 270 294 0 21 chr3 97559599 97559693 -62040090 + PB1D10 SINE Alu 1 92 -25 7 1329 334 292 116 8 chr3 97560309 97560430 -62039353 - RSINE1 SINE B4 -30 135 2 7 1329 1219 28 14 0 chr3 97561984 97562129 -62037654 + B1_Mus2 SINE Alu 1 147 0 7 1329 212 0 36 0 chr3 97562131 97562159 -62037624 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 7 1329 493 296 106 53 chr3 97562299 97562506 -62037277 + B4 SINE B4 49 266 -26 7 1329 485 58 0 14 chr3 97562507 97562577 -62037206 + (CA)n Simple_repeat Simple_repeat 2 70 0 7 1329 236 264 77 93 chr3 97563353 97563459 -62036324 + L1MC4 LINE L1 7787 7904 -138 7 1329 180 0 0 0 chr3 97563459 97563479 -62036304 + (TTA)n Simple_repeat Simple_repeat 1 20 0 7 1329 236 264 77 93 chr3 97563479 97563631 -62036152 + L1MC4 LINE L1 7905 8041 -1 7 1329 356 240 122 28 chr3 97564329 97564436 -62035347 - PB1D10 SINE Alu 0 117 1 8 1329 1188 64 0 0 chr3 97564561 97564718 -62035065 + B2_Mm2 SINE B2 2 158 -37 8 1329 180 0 0 0 chr3 97564719 97564739 -62035044 + (TAAA)n Simple_repeat Simple_repeat 3 22 0 8 1329 406 233 180 33 chr3 97565438 97565701 -62034082 - Charlie5 DNA MER1_type -14 2610 2355 8 1329 229 304 0 42 chr3 97566401 97566473 -62033310 + ID4_ SINE ID 1 69 -14 8 1329 216 0 0 0 chr3 97566661 97566685 -62033098 + (A)n Simple_repeat Simple_repeat 1 24 0 8 1329 217 279 0 37 chr3 97566898 97566980 -62032803 + (CATATA)n Simple_repeat Simple_repeat 1 79 0 8 1329 225 65 0 0 chr3 97569250 97569281 -62030502 + (T)n Simple_repeat Simple_repeat 1 31 0 8 1329 21 57 0 0 chr3 97571700 97571735 -62028048 + GC_rich Low_complexity Low_complexity 1 35 0 8 1329 26 64 0 0 chr3 97573681 97573728 -62026055 + AT_rich Low_complexity Low_complexity 1 47 0 8 1329 755 213 61 41 chr3 97573728 97573924 -62025859 - B3 SINE B2 -15 201 2 9 1329 790 173 75 0 chr3 97574250 97574383 -62025400 + B1_Mur1 SINE Alu 2 144 -5 9 1329 251 293 75 34 chr3 97574387 97574594 -62025189 + L1ME3 LINE L1 5766 5973 -189 9 1329 666 120 19 0 chr3 97574638 97574746 -62025037 + MTC LTR MaLR 1 110 -311 9 1329 1237 174 5 0 chr3 97574736 97574949 -62024834 + URR1B DNA MER1_type 12 225 0 9 1329 1316 136 132 57 chr3 97574949 97575028 -62024755 + MTC LTR MaLR 104 190 -231 9 1329 2419 179 36 2 chr3 97575028 97575476 -62024307 + Lx5 LINE L1 6585 7047 -3 9 1329 1316 136 132 57 chr3 97575476 97575692 -62024091 + MTC LTR MaLR 191 420 -1 9 1329 232 377 8 0 chr3 97575692 97575814 -62023969 + L1ME3 LINE L1 6014 6136 -28 9 1329 561 271 21 7 chr3 97576235 97576376 -62023407 + ID_B1 SINE B4 81 223 -1 9 1329 1539 187 7 16 chr3 97576505 97576815 -62022968 + RMER12 LTR ERVK 2 308 -1014 9 1329 1057 70 108 0 chr3 97576904 97577061 -62022722 + B2_Mm1t SINE B2 2 175 -18 9 1329 246 119 0 23 chr3 97577117 97577160 -62022623 + B2_Mm2 SINE B2 48 89 -106 9 1329 649 129 17 0 chr3 97577209 97577325 -62022458 + (GA)n Simple_repeat Simple_repeat 1 118 0 1 1329 1278 118 149 59 chr3 97577325 97577613 -62022170 + RMER12 LTR ERVK 456 769 -553 9 1329 615 27 0 0 chr3 97577613 97577686 -62022097 + (TATG)n Simple_repeat Simple_repeat 3 75 0 1 1329 260 200 101 58 chr3 97577691 97577760 -62022023 + RLTR21 LTR ERVK 1341 1412 -160 1 1329 530 218 29 151 chr3 97577929 97578134 -62021649 - MER5A DNA MER1_type -7 182 3 1 1329 201 121 0 0 chr3 97578141 97578174 -62021609 + (A)n Simple_repeat Simple_repeat 1 33 0 1 1329 234 0 0 0 chr3 97578209 97578235 -62021548 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 1 1329 1182 176 19 0 chr3 97578264 97578469 -62021314 + B3 SINE B2 1 209 -7 1 1329 52 41 0 0 chr3 97578524 97578597 -62021186 + AT_rich Low_complexity Low_complexity 1 73 0 1 1329 620 229 0 34 chr3 97578601 97578750 -62021033 + B1F SINE Alu 1 144 -5 1 1329 186 71 0 0 chr3 97578787 97578815 -62020968 + (CAGAGA)n Simple_repeat Simple_repeat 2 29 0 1 1329 207 0 0 0 chr3 97579116 97579139 -62020644 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 1329 312 211 33 0 chr3 97579380 97579470 -62020313 + MLT1A1 LTR MaLR 316 408 0 1 1329 855 98 0 0 chr3 97579963 97580086 -62019697 + (GGA)n Simple_repeat Simple_repeat 3 125 0 1 1329 855 98 0 0 chr3 97580086 97580209 -62019574 + (GAAA)n Simple_repeat Simple_repeat 1 123 0 1 1329 423 0 0 0 chr3 97580636 97580683 -62019100 + (TTTTTG)n Simple_repeat Simple_repeat 2 48 0 1 1329 1190 108 53 21 chr3 97581119 97581308 -62018475 - B2_Mm2 SINE B2 0 195 1 1 1329 357 284 66 22 chr3 97581415 97581552 -62018231 + RLTR42-int LTR ERVK 1258 1400 -4122 1 1329 1016 97 155 0 chr3 97581581 97581736 -62018047 + B2_Mm1t SINE B2 1 179 -14 1 1329 356 121 356 20 chr3 97581802 97581903 -62017880 + B2_Mm2 SINE B2 47 181 -14 1 1329 1509 193 102 6 chr3 97582002 97582335 -62017448 + MTD LTR MaLR 21 385 -34 1 1329 504 307 67 60 chr3 97583399 97583666 -62016117 - ORR1E LTR MaLR -40 319 51 1 1329 293 309 116 42 chr3 97584386 97584602 -62015181 + MER20B DNA MER1_type 183 414 -369 1 1329 413 176 14 0 chr3 97584756 97584830 -62014953 + B3A SINE B2 2 76 -122 1 1329 253 230 44 33 chr3 97584830 97584846 -62014937 + B4A SINE B4 2 92 -200 1 1329 314 119 45 45 chr3 97585000 97585088 -62014695 + Lx4A LINE L1 6967 7054 -4 1 1329 201 74 0 0 chr3 97585132 97585159 -62014624 + (GGA)n Simple_repeat Simple_repeat 2 28 0 1 1329 266 292 13 40 chr3 97585250 97585325 -62014458 - ORR1E LTR MaLR -190 180 108 1 1329 2533 45 0 0 chr3 97585348 97585656 -62014127 - L1Md_F2 LINE L1 0 6582 6275 1 1329 1105 53 0 0 chr3 97585656 97585789 -62013994 + L1Md_F2 LINE L1 6154 6286 -296 1 1329 482 223 26 0 chr3 97585789 97585898 -62013885 - ORR1E LTR MaLR -245 125 3 1 1329 638 193 19 6 chr3 97586766 97586928 -62012855 + (TA)n Simple_repeat Simple_repeat 2 165 0 1 1329 378 0 0 0 chr3 97587020 97587062 -62012721 + (CA)n Simple_repeat Simple_repeat 2 43 0 1 1329 8232 36 5 2 chr3 97587253 97588232 -62011551 + L1Md_F3 LINE L1 5603 6584 0 1 1329 4147 98 57 0 chr3 97588265 97588880 -62010903 - Lx4A LINE L1 -397 6661 6012 1 1329 2575 122 36 10 chr3 97588880 97589293 -62010490 + Lx4A LINE L1 6629 7052 -6 1 1329 746 97 0 9 chr3 97589294 97589408 -62010375 + (GGAA)n Simple_repeat Simple_repeat 3 115 0 1 1329 1056 77 0 0 chr3 97589420 97589563 -62010220 + (GAAA)n Simple_repeat Simple_repeat 4 146 0 1 1329 1670 144 51 63 chr3 97589577 97589992 -62009791 + RMER17C LTR ERVK 1 410 0 1 1329 207 0 0 0 chr3 97590895 97590918 -62008865 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1 1329 357 82 0 0 chr3 97591777 97591826 -62007957 + (CA)n Simple_repeat Simple_repeat 1 49 0 1 1329 1926 297 62 26 chr3 97592294 97593226 -62006557 + L1MA8 LINE L1 4125 5090 -1053 1 1329 729 122 0 0 chr3 97593228 97593343 -62006440 + (TTTC)n Simple_repeat Simple_repeat 3 117 0 1 1329 1173 195 9 14 chr3 97593352 97593565 -62006218 - B3 SINE B2 -1 215 4 1 1329 585 270 23 35 chr3 97593599 97593856 -62005927 + L1MA8 LINE L1 5102 5355 -788 1 1329 638 164 0 8 chr3 97593856 97593979 -62005804 + GA-rich Low_complexity Low_complexity 4 125 0 1 1329 1389 281 42 51 chr3 97593980 97594568 -62005215 + L1MA8 LINE L1 5354 5936 -355 1 1329 4083 125 61 4 chr3 97594590 97595345 -62004438 - RMER17D2 LTR ERVK 0 809 12 1 1329 288 0 0 0 chr3 97595345 97595377 -62004406 + (TG)n Simple_repeat Simple_repeat 1 32 0 1 1329 345 283 6 91 chr3 97595935 97596036 -62003747 + MLT1E1A LTR MaLR 106 205 -475 1 1329 743 217 45 64 chr3 97596036 97596238 -62003545 - B3A SINE B2 0 198 1 1 1329 345 283 6 91 chr3 97596238 97596311 -62003472 + MLT1E1A LTR MaLR 206 265 -415 1 1329 409 288 65 31 chr3 97596363 97596583 -62003200 + MLT1E1A LTR MaLR 391 666 -14 1 1329 1163 115 71 6 chr3 97597666 97597849 -62001934 - B2_Mm2 SINE B2 0 195 1 1 1329 304 368 51 7 chr3 97599259 97599396 -62000387 - B1F1 SINE Alu -6 143 1 1 1329 889 270 184 3 chr3 97599597 97599917 -61999866 + MTD LTR MaLR 42 419 0 1 1329 322 311 42 8 chr3 97600004 97600124 -61999659 - L1MC LINE L1 -2059 5823 5700 1 1329 442 324 55 47 chr3 97602245 97602520 -61997263 + B4A SINE B4 2 278 -14 1 1329 421 97 28 0 chr3 97602528 97602600 -61997183 + (CA)n Simple_repeat Simple_repeat 1 74 0 1 1329 333 0 0 0 chr3 97605018 97605055 -61994728 + (TG)n Simple_repeat Simple_repeat 1 37 0 1 1329 324 83 0 0 chr3 97605101 97605149 -61994634 + (CAGA)n Simple_repeat Simple_repeat 3 50 0 1 1329 248 102 20 0 chr3 97605974 97606023 -61993760 + (CATATA)n Simple_repeat Simple_repeat 5 54 0 1 1329 543 233 85 0 chr3 97606707 97606836 -61992947 + B1_Mur1 SINE Alu 2 141 -8 1 1329 412 288 79 95 chr3 97607055 97607296 -61992487 + MER33 DNA MER1_type 1 251 -73 1 1329 862 141 257 6 chr3 97607296 97607467 -61992316 - B3 SINE B2 -1 215 2 1 1329 412 288 79 95 chr3 97607467 97607540 -61992243 + MER33 DNA MER1_type 252 310 -14 1 1329 396 0 0 0 chr3 97608382 97608426 -61991357 + (TAA)n Simple_repeat Simple_repeat 1 44 0 1 1329 1286 27 0 0 chr3 97608426 97608573 -61991210 + B1_Mus1 SINE Alu 2 148 0 1 1329 180 0 0 0 chr3 97608585 97608605 -61991178 + (CAA)n Simple_repeat Simple_repeat 2 21 0 1 1329 627 81 0 0 chr3 97608606 97608705 -61991078 + (CAAAA)n Simple_repeat Simple_repeat 2 100 0 1 1329 266 279 116 9 chr3 97608718 97608830 -61990953 + L2a LINE L2 1926 2049 -1370 1 1329 297 68 0 0 chr3 97608875 97608919 -61990864 + (TTTTTG)n Simple_repeat Simple_repeat 5 48 0 1 1329 952 326 94 40 chr3 97608953 97609652 -61990131 + L2a LINE L2 2163 2899 -520 1 1329 245 320 0 0 chr3 97609752 97609830 -61989953 + L2a LINE L2 3063 3140 -286 1 1329 698 296 148 27 chr3 97609831 97610317 -61989466 + L1ME1 LINE L1 5579 6123 -56 1 1329 388 219 61 20 chr3 97610333 97610431 -61989352 + B1_Mur4 SINE Alu 48 149 -1 1 1329 680 151 16 0 chr3 97610436 97610562 -61989221 + GA-rich Low_complexity Low_complexity 4 131 0 1 1329 849 71 0 0 chr3 97610640 97610753 -61989030 + (GAAA)n Simple_repeat Simple_repeat 2 114 0 1 1329 3093 23 0 0 chr3 97610753 97611098 -61988685 + ORR1A0 LTR MaLR 2 346 0 1 1329 351 65 0 0 chr3 97611105 97611151 -61988632 + (GA)n Simple_repeat Simple_repeat 2 47 0 1 1329 1015 134 103 0 chr3 97611668 97611862 -61987921 - URR1A DNA MER1_type -8 218 5 1 1329 437 278 95 41 chr3 97611862 97611889 -61987894 + CYRA11_Mm Unknown Y-chromosome 179 411 -206 1 1329 393 299 111 0 chr3 97611881 97612025 -61987758 + MLT1E1 LTR MaLR 389 548 -106 1 1329 269 233 31 69 chr3 97612051 97612171 -61987612 + MLT1A1 LTR MaLR 257 392 -16 1 1329 225 243 0 0 chr3 97612360 97612430 -61987353 + (TG)n Simple_repeat Simple_repeat 1 70 0 1 1329 282 164 0 0 chr3 97612480 97612535 -61987248 + (CA)n Simple_repeat Simple_repeat 2 56 0 1 1329 468 270 143 69 chr3 97614961 97615339 -61984444 - RMER10A LTR ERVL -25 417 12 1 1329 192 234 0 0 chr3 97615365 97615412 -61984371 + MIR SINE MIR 98 144 -64 1 1329 225 0 0 0 chr3 97615870 97615895 -61983888 + (TG)n Simple_repeat Simple_repeat 2 26 0 1 1329 249 33 0 0 chr3 97615895 97615925 -61983858 + (GGGA)n Simple_repeat Simple_repeat 4 33 0 1 1329 425 189 167 0 chr3 97616861 97616951 -61982832 - B3 SINE B2 -111 105 1 1 1329 182 239 147 15 chr3 97616958 97617026 -61982757 + MIRb SINE MIR 63 139 -129 1 1329 292 235 24 12 chr3 97617244 97617326 -61982457 + (TATG)n Simple_repeat Simple_repeat 4 86 0 1 1329 1260 27 0 0 chr3 97617433 97617579 -61982204 - B1_Mus1 SINE Alu -1 147 2 1 1329 3297 43 5 0 chr3 97617640 97618034 -61981749 - MTA_Mm LTR MaLR 0 396 1 1 1329 750 240 52 12 chr3 97618105 97618278 -61981505 - B4A SINE B4 -18 274 95 1 1329 210 71 0 0 chr3 97618539 97618567 -61981216 + (CA)n Simple_repeat Simple_repeat 1 28 0 1 1329 278 253 190 0 chr3 97618587 97618716 -61981067 + L1MB3 LINE L1 5491 5643 -540 1 1329 672 263 167 6 chr3 97618814 97619145 -61980638 + L1MB3 LINE L1 5787 6171 -12 1 1329 618 221 35 7 chr3 97619154 97619169 -61980614 - B4A SINE B4 -4 288 274 1 1329 447 19 0 0 chr3 97619169 97619221 -61980562 + (GA)n Simple_repeat Simple_repeat 1 52 0 1 1329 618 221 35 7 chr3 97619221 97619346 -61980437 - B4A SINE B4 -19 273 144 1 1329 204 40 0 0 chr3 97619379 97619404 -61980379 + (CCCCCA)n Simple_repeat Simple_repeat 6 30 0 1 1329 1145 56 14 0 chr3 97620710 97620853 -61978930 - B1_Mm SINE Alu 0 147 3 1 1329 642 144 6 80 chr3 97620914 97621096 -61978687 + B1_Mur1 SINE Alu 1 142 -8 1 1329 21 82 0 0 chr3 97621118 97621167 -61978616 + AT_rich Low_complexity Low_complexity 1 49 0 1 1329 226 260 0 0 chr3 97621606 97621656 -61978127 + RSINE1 SINE B4 3 52 -113 1 1329 560 248 30 0 chr3 97621688 97621821 -61977962 + RSINE1 SINE B4 29 165 0 1 1329 291 174 0 0 chr3 97621838 97621924 -61977859 + (CA)n Simple_repeat Simple_repeat 2 87 0 1 1329 404 206 136 15 chr3 97622116 97622239 -61977544 + B3A SINE B2 4 129 -64 1 1329 456 67 0 0 chr3 97622239 97622299 -61977484 + (TG)n Simple_repeat Simple_repeat 2 61 0 1 1329 322 279 47 58 chr3 97622299 97622365 -61977418 + B2_Mm1a SINE B2 130 191 -2 1 1329 4547 133 42 11 chr3 97622980 97623314 -61976469 + RMER17D2 LTR ERVK 1 343 -466 1 1329 927 0 0 0 chr3 97623314 97623417 -61976366 + (TCTCC)n Simple_repeat Simple_repeat 1 103 0 1 1329 4547 133 42 11 chr3 97623417 97623864 -61975919 + RMER17D2 LTR ERVK 344 805 -4 1 1329 798 178 254 0 chr3 97624000 97624169 -61975614 + B3 SINE B2 1 212 -4 1 1329 312 115 24 49 chr3 97624525 97624607 -61975176 + (TCTCTG)n Simple_repeat Simple_repeat 2 81 0 2 1329 23 0 0 0 chr3 97624884 97624907 -61974876 + AT_rich Low_complexity Low_complexity 1 23 0 2 1329 394 244 12 0 chr3 97625485 97625567 -61974216 + B3 SINE B2 48 130 -86 2 1329 1409 35 103 0 chr3 97625627 97625647 -61974136 - B2_Mm1a SINE B2 0 193 156 2 1329 234 0 0 0 chr3 97625647 97625673 -61974110 + (TTTA)n Simple_repeat Simple_repeat 1 26 0 2 1329 1409 35 103 0 chr3 97625673 97625826 -61973957 - B2_Mm1a SINE B2 -38 155 3 2 1329 345 289 57 19 chr3 97625850 97625956 -61973827 + PB1D7 SINE Alu 1 110 -10 2 1329 649 312 78 0 chr3 97626007 97626212 -61973571 - ID_B1 SINE B4 0 224 4 2 1329 729 135 300 0 chr3 97626232 97626402 -61973381 + URR1A DNA MER1_type 1 221 -5 2 1329 531 0 0 0 chr3 97628615 97628674 -61971109 + (TC)n Simple_repeat Simple_repeat 1 59 0 2 1329 209 33 33 0 chr3 97629569 97629599 -61970184 + (TA)n Simple_repeat Simple_repeat 2 32 0 2 1329 359 271 0 0 chr3 97630333 97630429 -61969354 + PB1 SINE Alu 22 117 -10 2 1329 275 344 71 71 chr3 97632257 97633221 -61966562 + L2a LINE L2 2406 3425 -1 2 1329 615 81 0 0 chr3 97633788 97633874 -61965909 + (TTCC)n Simple_repeat Simple_repeat 3 88 0 2 1329 738 267 155 29 chr3 97634577 97634886 -61964897 + MTEa LTR MaLR 32 379 0 2 1329 250 333 0 0 chr3 97634962 97635037 -61964746 + MIRb SINE MIR 21 95 -173 2 1329 204 236 69 0 chr3 97635554 97635626 -61964157 - MIRc SINE MIR -22 246 170 2 1329 991 301 103 8 chr3 97635904 97636439 -61963344 + L1MB8 LINE L1 5584 6169 -9 2 1329 767 140 0 7 chr3 97636444 97636557 -61963226 + (GGA)n Simple_repeat Simple_repeat 3 114 0 2 1329 1515 28 0 0 chr3 97636557 97636737 -61963046 + (GGAGAA)n Simple_repeat Simple_repeat 1 180 0 2 1329 767 140 0 7 chr3 97636737 97636760 -61963023 + (GGA)n Simple_repeat Simple_repeat 1 23 0 2 1329 320 67 0 0 chr3 97636909 97636954 -61962829 + B2_Mm2 SINE B2 1 45 -150 2 1329 289 336 37 18 chr3 97636943 97637052 -61962731 + B3 SINE B2 80 190 -26 2 1329 299 254 16 81 chr3 97638064 97638188 -61961595 + B3A SINE B2 1 116 -82 2 1329 417 209 512 6 chr3 97638188 97638218 -61961565 + B4A SINE B4 1 232 -60 2 1329 342 0 0 0 chr3 97638255 97638293 -61961490 + (CA)n Simple_repeat Simple_repeat 2 39 0 2 1329 464 191 62 32 chr3 97638413 97638563 -61961220 + B3 SINE B2 37 187 -8 2 1329 552 279 54 61 chr3 97638802 97639081 -61960702 + MER57F LTR ERV1 1 277 -159 2 1329 471 35 0 0 chr3 97639429 97639486 -61960297 + (TAA)n Simple_repeat Simple_repeat 2 58 0 2 1329 266 194 16 0 chr3 97639872 97639934 -61959849 + CT-rich Low_complexity Low_complexity 4 66 0 2 1329 206 319 90 62 chr3 97640311 97640488 -61959295 + MIR SINE MIR 81 262 0 2 1329 238 369 25 0 chr3 97640879 97641001 -61958782 - L2c LINE L2 -258 3129 3005 2 1329 2375 113 10 28 chr3 97641332 97641725 -61958058 + ORR1B1 LTR MaLR 1 386 -8 2 1329 385 239 25 41 chr3 97641916 97642038 -61957745 + RLTR42-int LTR ERVK 1288 1407 -4115 2 1329 942 156 0 9 chr3 97642366 97642601 -61957182 + (TCTA)n Simple_repeat Simple_repeat 1 232 0 2 1329 1993 158 90 11 chr3 97642695 97643072 -61956711 + MTC LTR MaLR 1 407 -14 2 1329 1647 168 29 93 chr3 97644759 97645167 -61954616 - ORR1B1 LTR MaLR -8 386 5 2 1329 180 200 0 0 chr3 97647003 97647043 -61952740 + GA-rich Low_complexity Low_complexity 1 40 0 2 1329 310 314 8 0 chr3 97647256 97647380 -61952403 + Tigger12 DNA MER2_type 1737 1861 -98 2 1329 1198 212 128 35 chr3 97648067 97648433 -61951350 - MTD LTR MaLR -14 405 6 2 166 909 233 66 14 chr3 97648541 97648754 -61951029 + ID_B1 SINE B4 1 224 0 2 1330 315 0 0 0 chr3 97648770 97648805 -61950978 + (CA)n Simple_repeat Simple_repeat 1 35 0 2 1330 384 264 96 121 chr3 97649294 97649699 -61950084 - RMER10A LTR ERVL -19 423 29 2 1330 305 297 89 115 chr3 97651234 97651538 -61948245 + ORR1E LTR MaLR 60 355 -4 2 1330 219 69 0 0 chr3 97652065 97652094 -61947689 + (CA)n Simple_repeat Simple_repeat 1 29 0 2 1330 576 0 0 0 chr3 97652143 97652207 -61947576 + (TA)n Simple_repeat Simple_repeat 2 65 0 2 1330 189 0 0 0 chr3 97652256 97652277 -61947506 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 2 1330 411 56 0 0 chr3 97653581 97653635 -61946148 + (TG)n Simple_repeat Simple_repeat 1 54 0 2 1330 344 240 31 0 chr3 97653783 97653879 -61945904 - B4A SINE B4 -192 100 2 2 1330 475 169 178 37 chr3 97654560 97654695 -61945088 + RMER1C Other Other 1115 1268 -74 2 1330 527 313 56 43 chr3 97655041 97655345 -61944438 + MTE-int LTR MaLR 212 519 -1061 2 1330 342 182 0 0 chr3 97655381 97655447 -61944336 + (TG)n Simple_repeat Simple_repeat 1 66 0 2 1330 3862 114 77 4 chr3 97655580 97656222 -61943561 - RMER6A LTR ERVK -7 749 60 2 1330 252 0 0 0 chr3 97656222 97656250 -61943533 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 2 1330 3862 114 77 4 chr3 97656250 97656305 -61943478 - RMER6A LTR ERVK -697 59 2 2 1330 1679 139 108 0 chr3 97656370 97656693 -61943090 - ORR1C1 LTR MaLR -8 370 13 2 1330 198 0 0 0 chr3 97656793 97656815 -61942968 + (TGG)n Simple_repeat Simple_repeat 1 22 0 2 1330 709 240 0 14 chr3 97656838 97656986 -61942797 - B1_Mur2 SINE Alu -2 147 2 2 1330 788 183 26 25 chr3 97657219 97657426 -61942357 + B3 SINE B2 1 194 -1 2 1330 925 232 17 0 chr3 97658023 97658200 -61941583 - B3A SINE B2 -18 180 1 2 1330 308 72 27 67 chr3 97659185 97659260 -61940523 + (TCTG)n Simple_repeat Simple_repeat 1 72 0 2 1330 24 0 0 0 chr3 97659701 97659725 -61940058 + AT_rich Low_complexity Low_complexity 1 24 0 2 1330 4914 40 0 0 chr3 97659751 97660323 -61939460 - L1Md_T LINE L1 0 6582 6011 2 1330 8645 13 0 0 chr3 97660323 97661407 -61938376 + L1Md_T LINE L1 4923 6006 -576 2 1330 209 204 0 0 chr3 97661488 97661537 -61938246 + A-rich Low_complexity Low_complexity 1 49 0 2 1330 216 200 0 0 chr3 97661683 97661728 -61938055 + (TG)n Simple_repeat Simple_repeat 1 45 0 2 1330 520 314 12 44 chr3 97661728 97661888 -61937895 - RSINE1 SINE B4 0 165 11 2 1330 845 202 208 0 chr3 97661939 97662112 -61937671 + B3 SINE B2 3 211 -5 2 1330 1098 83 7 7 chr3 97662152 97662298 -61937485 + B1_Mus2 SINE Alu 1 146 -1 2 1330 956 149 200 6 chr3 97662782 97662957 -61936826 - B3 SINE B2 -7 209 1 2 1330 449 76 15 0 chr3 97664037 97664103 -61935680 + (TC)n Simple_repeat Simple_repeat 2 68 0 2 1330 235 146 21 0 chr3 97665392 97665440 -61934343 + MIRc SINE MIR 101 149 -119 2 1330 186 43 0 0 chr3 97665827 97665850 -61933933 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 2 1330 954 273 148 23 chr3 97666000 97666438 -61933345 + MLT1D LTR MaLR 13 505 0 2 1330 268 271 34 34 chr3 97666919 97667007 -61932776 + PB1D10 SINE Alu 1 88 -29 2 1330 2443 82 9 3 chr3 97667173 97667504 -61932279 + L1_Mus3 LINE L1 6305 6637 -1 2 1330 1404 254 63 15 chr3 97667853 97668248 -61931535 - MTD LTR MaLR 0 419 6 2 1330 261 0 0 0 chr3 97668542 97668571 -61931212 + (T)n Simple_repeat Simple_repeat 1 29 0 2 1330 3774 144 23 5 chr3 97668934 97669540 -61930243 + Lx4B LINE L1 6442 7058 0 2 1330 420 328 122 24 chr3 97669547 97669925 -61929858 + L1ME3 LINE L1 5571 5985 -177 2 1330 227 343 0 0 chr3 97670029 97670099 -61929684 + (TG)n Simple_repeat Simple_repeat 1 70 0 2 1330 366 23 0 0 chr3 97670158 97670201 -61929582 + (CA)n Simple_repeat Simple_repeat 1 43 0 2 1330 383 287 0 44 chr3 97670209 97670237 -61929546 - B4 SINE B4 -184 108 81 2 1330 219 69 0 0 chr3 97670237 97670266 -61929517 + (CTTG)n Simple_repeat Simple_repeat 3 31 0 2 1330 383 287 0 44 chr3 97670266 97670350 -61929433 - B4 SINE B4 -212 80 1 2 1330 232 341 139 14 chr3 97670420 97670714 -61929069 - L3 LINE CR1 -90 4399 4069 2 1330 21 0 0 0 chr3 97671100 97671121 -61928662 + GC_rich Low_complexity Low_complexity 1 21 0 2 1330 1127 88 0 0 chr3 97672633 97672780 -61927003 - B1_Mus1 SINE Alu 0 148 2 2 1330 22 0 0 0 chr3 97673194 97673216 -61926567 + AT_rich Low_complexity Low_complexity 1 22 0 2 1330 794 150 0 130 chr3 97674179 97674348 -61925435 - B1_Mur3 SINE Alu -2 147 1 2 1330 751 157 16 135 chr3 97674351 97674363 -61925420 - B2_Mm2 SINE B2 -25 170 158 2 1330 440 86 0 14 chr3 97674363 97674434 -61925349 + (TATG)n Simple_repeat Simple_repeat 3 72 0 2 1330 751 157 16 135 chr3 97674434 97674613 -61925170 - B2_Mm2 SINE B2 -38 157 2 2 1330 243 170 0 0 chr3 97675046 97675093 -61924690 + CT-rich Low_complexity Low_complexity 2 48 0 2 1330 501 325 76 5 chr3 97675098 97675296 -61924487 + MLT1A1 LTR MaLR 1 212 -196 2 1330 1036 177 63 15 chr3 97675398 97675604 -61924179 + B3 SINE B2 1 216 0 2 1330 50 31 0 0 chr3 97675622 97675686 -61924097 + AT_rich Low_complexity Low_complexity 1 64 0 2 1330 2011 160 5 24 chr3 97675817 97676188 -61923595 + Lx LINE L1 6288 6651 -3 2 1330 21 36 0 0 chr3 97676537 97676565 -61923218 + AT_rich Low_complexity Low_complexity 1 28 0 2 1330 189 0 0 0 chr3 97677936 97677957 -61921826 + (A)n Simple_repeat Simple_repeat 1 21 0 2 1330 272 343 95 41 chr3 97677957 97678325 -61921458 + MLT1A1-int LTR MaLR 555 942 -547 2 1330 379 237 103 9 chr3 97678413 97678571 -61921212 + B3 SINE B2 35 198 0 2 1330 263 219 9 94 chr3 97679429 97679535 -61920248 + L1MA7 LINE L1 6195 6291 0 2 1330 1332 95 21 21 chr3 97679561 97679755 -61920028 + B2_Mm2 SINE B2 2 195 0 2 1330 294 87 0 0 chr3 97680251 97680297 -61919486 + (TG)n Simple_repeat Simple_repeat 2 47 0 2 1330 195 42 0 0 chr3 97680935 97680959 -61918824 + (GA)n Simple_repeat Simple_repeat 1 24 0 2 1330 252 179 30 0 chr3 97681710 97681777 -61918006 - MER96B DNA hAT -77 340 272 3 1330 247 273 0 108 chr3 97681809 97681920 -61917863 + B4 SINE B4 186 284 -8 3 1330 341 316 0 31 chr3 97682204 97682302 -61917481 + RSINE1 SINE B4 12 106 -59 3 1330 253 324 0 0 chr3 97682881 97682955 -61916828 + G-rich Low_complexity Low_complexity 1 74 0 3 1330 315 65 0 0 chr3 97683636 97683682 -61916101 + (ATTG)n Simple_repeat Simple_repeat 2 47 0 3 1330 463 278 79 0 chr3 97683682 97683808 -61915975 - B1F SINE Alu -11 138 3 3 1330 607 232 8 0 chr3 97684029 97684154 -61915629 - ORR1D2 LTR MaLR -244 126 1 3 1330 866 209 88 52 chr3 97684371 97684679 -61915104 + ORR1D1 LTR MaLR 1 319 -55 3 1330 462 143 0 0 chr3 97684863 97684940 -61914843 + (TTC)n Simple_repeat Simple_repeat 2 78 0 3 1330 22 0 0 0 chr3 97685202 97685224 -61914559 + AT_rich Low_complexity Low_complexity 1 22 0 3 1330 804 256 21 0 chr3 97685226 97685417 -61914366 + B3 SINE B2 11 205 -11 3 1330 1210 55 0 0 chr3 97685916 97686062 -61913721 - B1_Mus2 SINE Alu 0 147 2 3 1330 272 283 133 15 chr3 97686423 97686587 -61913196 + MIRb SINE MIR 73 258 -4 3 1330 738 282 5 33 chr3 97686590 97686753 -61913030 + B3 SINE B2 3 166 -50 3 1330 345 47 0 0 chr3 97686753 97686796 -61912987 + (CA)n Simple_repeat Simple_repeat 1 43 0 3 1330 738 282 5 33 chr3 97686796 97686815 -61912968 + B3 SINE B2 167 184 -32 3 1330 267 103 0 0 chr3 97686815 97686854 -61912929 + (CATATA)n Simple_repeat Simple_repeat 3 41 0 3 1330 738 282 5 33 chr3 97686854 97686883 -61912900 + B3 SINE B2 185 208 -8 3 1330 2201 131 49 79 chr3 97687216 97687545 -61912238 + MTC LTR MaLR 1 346 -75 3 1330 3184 111 43 27 chr3 97687545 97688056 -61911727 + Lx4A LINE L1 6537 7055 -3 3 1330 2201 131 49 79 chr3 97688056 97688158 -61911625 + MTC LTR MaLR 347 419 -2 3 1330 419 222 10 0 chr3 97689434 97689533 -61910250 + MLT1A1 LTR MaLR 290 389 -19 3 1330 27 49 0 0 chr3 97689918 97689959 -61909824 + AT_rich Low_complexity Low_complexity 1 41 0 3 1330 201 68 21 64 chr3 97690501 97690548 -61909235 + T-rich Low_complexity Low_complexity 3 47 0 3 1330 928 154 0 26 chr3 97690549 97690702 -61909081 - B1_Mur4 SINE Alu -1 149 1 3 1330 228 133 0 100 chr3 97690817 97690867 -61908916 - PB1D10 SINE Alu 0 117 73 3 1330 389 255 4 70 chr3 97690882 97690992 -61908791 + PB1D10 SINE Alu 5 107 -10 3 1330 182 289 237 0 chr3 97691498 97691595 -61908188 - MIR3 SINE MIR -39 169 50 3 1330 231 88 0 0 chr3 97691636 97691670 -61908113 + (G)n Simple_repeat Simple_repeat 1 34 0 3 1330 487 219 122 0 chr3 97692951 97693074 -61906709 + RSINE1 SINE B4 4 141 -24 3 1330 183 100 0 0 chr3 97693074 97693104 -61906679 + (CA)n Simple_repeat Simple_repeat 1 30 0 3 1330 243 0 0 0 chr3 97693324 97693351 -61906432 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 3 1330 522 0 0 0 chr3 97693514 97693572 -61906211 + (CA)n Simple_repeat Simple_repeat 1 58 0 3 1330 710 193 7 0 chr3 97693574 97693709 -61906074 + B1_Mur1 SINE Alu 6 141 -8 3 1330 328 235 0 14 chr3 97693732 97693801 -61905982 + ID_B1 SINE B4 94 161 -63 3 1330 270 163 33 121 chr3 97693740 97693831 -61905952 + B1_Mus1 SINE Alu 23 105 -43 3 1330 228 336 44 22 chr3 97696743 97696880 -61902903 + L1MEg LINE L1 643 782 -5453 3 1330 285 98 0 0 chr3 97697031 97697072 -61902711 + (ATG)n Simple_repeat Simple_repeat 1 41 0 3 1330 1330 213 124 6 chr3 97697115 97697446 -61902337 + ORR1D2 LTR MaLR 1 370 0 3 1330 345 235 24 0 chr3 97697565 97697650 -61902133 + L1MEg LINE L1 2235 2321 -5012 3 1330 333 258 10 10 chr3 97698098 97698196 -61901587 - Ricksha_c DNA MuDR -38 2010 1913 3 1330 33 56 0 0 chr3 97698246 97698300 -61901483 + AT_rich Low_complexity Low_complexity 1 54 0 3 1330 497 188 134 34 chr3 97698310 97698459 -61901324 - Ricksha_c DNA MuDR -134 1914 1751 3 1330 741 213 0 7 chr3 97698481 97698623 -61901160 + RSINE1 SINE B4 4 144 -21 3 1330 840 241 37 0 chr3 97698757 97698948 -61900835 - B3 SINE B2 -17 199 2 3 1330 270 237 13 38 chr3 97698951 97699030 -61900753 - Ricksha_c DNA MuDR -376 1672 1596 3 1330 23 0 0 0 chr3 97699092 97699115 -61900668 + AT_rich Low_complexity Low_complexity 1 23 0 3 1330 597 151 325 0 chr3 97699120 97699231 -61900552 - Lx9 LINE L1 -2 7642 7517 3 1330 405 58 0 0 chr3 97699231 97699283 -61900500 + (CA)n Simple_repeat Simple_repeat 2 53 0 3 1330 597 151 325 0 chr3 97699283 97699337 -61900446 - Lx9 LINE L1 -128 7516 7425 3 1330 288 53 0 0 chr3 97699641 97699679 -61900104 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 3 1330 348 258 0 43 chr3 97699806 97699899 -61899884 + PB1D10 SINE Alu 14 102 -15 3 1330 236 200 0 0 chr3 97699899 97699949 -61899834 + (CAAT)n Simple_repeat Simple_repeat 3 52 0 3 1330 279 0 0 0 chr3 97700947 97700978 -61898805 + (TTTA)n Simple_repeat Simple_repeat 3 33 0 3 1330 1169 69 6 0 chr3 97700980 97701140 -61898643 - B2_Mm2 SINE B2 -34 161 1 3 1330 183 80 0 0 chr3 97701189 97701214 -61898569 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 3 1330 510 96 0 0 chr3 97701723 97701796 -61897987 + (CACAA)n Simple_repeat Simple_repeat 4 76 0 3 1330 24 0 0 0 chr3 97702091 97702115 -61897668 + AT_rich Low_complexity Low_complexity 1 24 0 3 1330 339 25 0 0 chr3 97702303 97702343 -61897440 + (TC)n Simple_repeat Simple_repeat 1 40 0 3 1330 334 206 14 0 chr3 97702700 97702773 -61897010 + ID4_ SINE ID 2 75 -8 3 1330 518 246 145 79 chr3 97703099 97703417 -61896366 - RLTR15 LTR ERVK -20 339 1 3 1330 304 202 87 87 chr3 97703699 97703791 -61895992 + B1F2 SINE Alu 45 136 -13 3 1330 522 139 0 0 chr3 97704068 97704154 -61895629 + (TC)n Simple_repeat Simple_repeat 2 87 0 3 1330 225 266 83 19 chr3 97704176 97704289 -61895494 - MIR SINE MIR -37 231 107 3 1330 237 139 0 0 chr3 97704463 97704506 -61895277 + (TA)n Simple_repeat Simple_repeat 1 43 0 3 1330 814 240 19 28 chr3 97704527 97704741 -61895042 - B3 SINE B2 -4 212 1 3 1330 374 233 68 0 chr3 97706545 97706648 -61893135 - MER20 DNA MER1_type -17 202 93 3 1330 327 248 103 56 chr3 97706848 97706955 -61892828 - PB1D10 SINE Alu 0 117 6 3 1330 248 295 141 30 chr3 97708240 97708439 -61891344 + MIR SINE MIR 10 230 -32 3 1330 288 216 143 67 chr3 97708752 97708871 -61890912 - L1ME4a LINE L1 -230 5894 5767 3 1330 234 306 12 12 chr3 97709225 97709311 -61890472 - MER5B DNA MER1_type -89 89 4 3 1330 180 0 0 0 chr3 97709639 97709659 -61890124 + (CATA)n Simple_repeat Simple_repeat 4 23 0 3 1330 499 281 194 17 chr3 97710102 97710334 -61889449 - MLT1A0 LTR MaLR -37 328 56 3 1330 256 288 123 26 chr3 97711343 97711457 -61888326 + B2_Mm2 SINE B2 1 125 -70 3 1330 967 240 14 97 chr3 97711633 97711827 -61887956 - B4 SINE B4 -25 267 93 3 1330 1284 119 0 15 chr3 97711827 97712024 -61887759 - B2_Mm2 SINE B2 -1 194 1 3 1330 967 240 14 97 chr3 97712024 97712119 -61887664 - B4 SINE B4 -200 92 2 3 1330 22 0 0 0 chr3 97712210 97712232 -61887551 + AT_rich Low_complexity Low_complexity 1 22 0 3 1330 250 217 133 0 chr3 97712580 97712640 -61887143 - ID4 SINE ID -11 72 5 3 1330 565 281 219 29 chr3 97712696 97713007 -61886776 - MTEa LTR MaLR -9 370 1 3 1330 258 258 30 0 chr3 97713383 97713449 -61886334 + PB1 SINE Alu 2 69 -58 3 1330 450 0 0 0 chr3 97713464 97713514 -61886269 + (TG)n Simple_repeat Simple_repeat 2 51 0 3 1330 764 295 88 76 chr3 97713528 97713869 -61885914 + MER2 DNA MER2_type 1 345 0 3 1330 2055 207 62 26 chr3 97714074 97714641 -61885142 - RCHARR1 DNA MER1_type -1 973 387 3 1330 349 292 185 25 chr3 97714639 97714839 -61884944 - RCHARR1 DNA MER1_type -738 236 5 3 1330 853 100 12 54 chr3 97715515 97715664 -61884119 + B1_Mur3 SINE Alu 8 148 -1 3 1330 357 184 365 7 chr3 97716120 97716155 -61883628 - B3 SINE B2 0 216 183 3 1330 339 25 0 0 chr3 97716155 97716195 -61883588 + (TG)n Simple_repeat Simple_repeat 1 40 0 3 1330 357 184 365 7 chr3 97716195 97716307 -61883476 - B3 SINE B2 -34 182 18 3 1330 822 145 49 25 chr3 97719148 97719311 -61880472 - B2_Mm2 SINE B2 -14 181 15 3 1330 458 261 124 62 chr3 97719486 97719760 -61880023 - B4 SINE B4 0 292 2 3 1330 686 224 0 47 chr3 97719867 97720017 -61879766 - B1_Mur1 SINE Alu -1 148 6 3 1330 412 268 21 0 chr3 97720101 97720198 -61879585 - B4A SINE B4 -191 101 3 3 1330 38 39 0 0 chr3 97720243 97720295 -61879488 + AT_rich Low_complexity Low_complexity 1 52 0 3 1330 919 216 5 31 chr3 97720344 97720540 -61879243 - B3 SINE B2 0 216 26 3 1330 227 306 16 0 chr3 97720579 97720641 -61879142 - B4 SINE B4 -145 147 85 3 1330 180 125 0 0 chr3 97720815 97720847 -61878936 + (TG)n Simple_repeat Simple_repeat 1 32 0 3 1330 857 251 69 14 chr3 97720878 97721153 -61878630 - B4A SINE B4 0 292 3 3 1330 205 152 0 42 chr3 97721194 97721242 -61878541 + T-rich Low_complexity Low_complexity 1 46 0 3 1330 1106 95 0 0 chr3 97721243 97721390 -61878393 - B1_Mus1 SINE Alu -1 147 1 3 1330 262 195 56 28 chr3 97721942 97722044 -61877739 - MTEb LTR MaLR -21 358 252 3 1330 262 303 40 20 chr3 97722118 97722219 -61877564 - MTEb LTR MaLR -272 122 20 3 1330 210 105 0 0 chr3 97722410 97722448 -61877335 + (A)n Simple_repeat Simple_repeat 1 38 0 3 1330 2335 163 96 19 chr3 97723303 97723772 -61876011 - RLTR16 LTR ERVK 0 505 1 3 1330 230 321 18 44 chr3 97723787 97723901 -61875882 - PB1D10 SINE Alu 0 117 7 3 1330 722 244 43 5 chr3 97724341 97724526 -61875257 + B3A SINE B2 6 197 -1 3 1330 1309 27 0 0 chr3 97724544 97724692 -61875091 - B1_Mus1 SINE Alu 0 148 1 3 1330 211 72 23 23 chr3 97725842 97725885 -61873898 + (TTTTTG)n Simple_repeat Simple_repeat 4 46 0 3 1330 495 149 96 0 chr3 97725909 97726003 -61873780 - B1_Mur4 SINE Alu 0 150 48 3 1330 722 36 53 18 chr3 97726186 97726299 -61873484 - L1Md_F3 LINE L1 0 6584 6468 3 1330 301 304 33 0 chr3 97727809 97727901 -61871882 - MIR SINE MIR -139 123 29 3 1330 534 240 53 33 chr3 97728747 97728898 -61870885 + RSINE1 SINE B4 4 157 -8 4 1330 21 0 0 0 chr3 97728898 97728919 -61870864 + AT_rich Low_complexity Low_complexity 1 21 0 4 1330 1503 54 16 0 chr3 97730035 97730219 -61869564 - B2_Mm2 SINE B2 -7 188 2 4 1330 307 241 85 57 chr3 97731277 97731418 -61868365 - ID_B1 SINE B4 0 224 80 4 1330 266 298 97 17 chr3 97732340 97732527 -61867256 + MIRc SINE MIR 7 198 -70 4 1330 251 200 113 14 chr3 97732644 97732715 -61867068 + PB1D9 SINE Alu 30 107 -13 4 1330 527 238 105 7 chr3 97733106 97733258 -61866525 + B3 SINE B2 22 188 -28 4 1330 386 162 75 0 chr3 97733296 97733376 -61866407 + B1_Mus2 SINE Alu 60 145 -2 4 1330 312 296 96 48 chr3 97733396 97733563 -61866220 - B4 SINE B4 -117 175 1 4 1330 263 318 0 0 chr3 97733615 97733678 -61866105 - ID4_ SINE ID 0 83 21 4 1330 550 217 35 28 chr3 97733747 97733889 -61865894 - B1_Mur2 SINE Alu -6 143 1 4 1330 21 0 0 0 chr3 97733892 97733913 -61865870 + AT_rich Low_complexity Low_complexity 1 21 0 4 1330 213 39 0 0 chr3 97734981 97735007 -61864776 + (CTTTG)n Simple_repeat Simple_repeat 2 27 0 4 1330 274 143 325 0 chr3 97736452 97736529 -61863254 + B2_Mm2 SINE B2 1 102 -93 4 1330 180 0 0 0 chr3 97736529 97736549 -61863234 + (TG)n Simple_repeat Simple_repeat 1 20 0 4 1330 414 0 0 0 chr3 97736549 97736594 -61863189 + (GA)n Simple_repeat Simple_repeat 1 46 0 4 1330 22 0 0 0 chr3 97736605 97736627 -61863156 + AT_rich Low_complexity Low_complexity 1 22 0 4 1330 236 319 22 0 chr3 97737767 97737858 -61861925 + CT-rich Low_complexity Low_complexity 4 96 0 4 1330 1190 75 115 6 chr3 97738063 97738081 -61861702 - B2_Mm1a SINE B2 0 193 176 4 1330 261 0 0 0 chr3 97738081 97738110 -61861673 + (TTTA)n Simple_repeat Simple_repeat 1 29 0 4 1330 1190 75 115 6 chr3 97738110 97738265 -61861518 - B2_Mm1a SINE B2 -18 175 1 4 1330 186 43 0 0 chr3 97738401 97738424 -61861359 + (TG)n Simple_repeat Simple_repeat 1 23 0 4 1330 598 246 0 0 chr3 97738431 97738549 -61861234 - B3A SINE B2 -48 150 33 4 1330 758 171 8 0 chr3 97738551 97738680 -61861103 + B3 SINE B2 1 130 -86 4 1330 252 0 0 0 chr3 97738700 97738728 -61861055 + (A)n Simple_repeat Simple_repeat 1 28 0 4 1330 366 42 0 0 chr3 97739163 97739211 -61860572 + (TG)n Simple_repeat Simple_repeat 2 49 0 4 1330 427 253 92 20 chr3 97739364 97739517 -61860266 - B4A SINE B4 -46 246 83 4 1330 447 222 0 79 chr3 97739543 97739670 -61860113 - B1_Mus2 SINE Alu -1 146 30 4 1330 396 276 170 6 chr3 97739593 97739764 -61860019 - B4A SINE B4 -93 199 1 4 1330 1504 185 38 32 chr3 97739816 97740156 -61859627 - ORR1D1 LTR MaLR 0 374 33 4 1330 216 0 0 0 chr3 97740362 97740386 -61859397 + (CCA)n Simple_repeat Simple_repeat 1 24 0 4 1330 1182 69 0 0 chr3 97740758 97740992 -61858791 + (CA)n Simple_repeat Simple_repeat 1 234 0 4 1330 881 296 103 26 chr3 97741616 97742277 -61857506 - L1MB8 LINE L1 -11 6167 5464 4 1330 365 256 3 11 chr3 97742376 97742482 -61857301 - ID4_ SINE ID -48 104 2 4 1330 180 0 0 0 chr3 97742525 97742545 -61857238 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 4 1330 1159 58 0 0 chr3 97742545 97742683 -61857100 - B1_Mus1 SINE Alu -10 138 1 4 1330 257 256 149 11 chr3 97742731 97742818 -61856965 - B1F1 SINE Alu -40 109 11 4 1330 1018 276 103 36 chr3 97742828 97743294 -61856489 - L1MB8 LINE L1 -944 5202 4706 4 1330 361 294 0 0 chr3 97743298 97743390 -61856393 + (CTG)n Simple_repeat Simple_repeat 2 93 0 4 1330 223 212 45 0 chr3 97743952 97744018 -61855765 + GA-rich Low_complexity Low_complexity 2 70 0 4 1330 308 317 20 27 chr3 97744065 97744211 -61855572 + RSINE1 SINE B4 4 148 -17 4 1330 351 0 0 0 chr3 97744271 97744310 -61855473 + (CA)n Simple_repeat Simple_repeat 2 40 0 4 1330 270 279 120 54 chr3 97744343 97744510 -61855273 + L1M5 LINE L1 5582 5764 -360 4 1330 196 342 140 25 chr3 97744898 97745213 -61854570 + L2a LINE L2 3073 3423 -3 4 1330 300 309 166 6 chr3 97745318 97745481 -61854302 + MIRb SINE MIR 56 244 -24 4 1330 230 303 120 0 chr3 97745637 97745779 -61854004 + MIR3 SINE MIR 42 200 -8 4 1330 760 131 136 15 chr3 97746922 97747054 -61852729 - B1_Mur2 SINE Alu 0 149 2 4 1330 792 219 102 5 chr3 97747083 97747280 -61852503 - B3 SINE B2 0 216 1 4 1330 223 312 115 39 chr3 97747464 97747594 -61852189 + MIRc SINE MIR 21 160 -108 4 1330 2264 150 68 5 chr3 97747594 97747990 -61851793 - MTC LTR MaLR 0 421 1 4 1330 772 151 8 0 chr3 97749994 97750120 -61849663 - B1_Mus2 SINE Alu -8 139 13 4 1330 31 0 0 0 chr3 97750248 97750279 -61849504 + AT_rich Low_complexity Low_complexity 1 31 0 4 1330 194 176 98 0 chr3 97750359 97750410 -61849373 - MIR SINE MIR -103 159 104 4 1330 216 0 0 0 chr3 97750621 97750645 -61849138 + (T)n Simple_repeat Simple_repeat 1 24 0 4 1330 192 222 0 22 chr3 97751611 97751657 -61848126 + MIRb SINE MIR 64 108 -160 4 1330 659 209 276 0 chr3 97752090 97752163 -61847620 - B3 SINE B2 -8 208 136 4 1330 369 0 0 0 chr3 97752163 97752204 -61847579 + (GAATG)n Simple_repeat Simple_repeat 2 42 0 4 1330 659 209 276 0 chr3 97752204 97752293 -61847490 - B3 SINE B2 -81 135 2 4 1330 794 176 0 22 chr3 97753083 97753222 -61846561 - B1_Mur3 SINE Alu -13 136 1 4 1330 1126 324 90 30 chr3 97753668 97754632 -61845151 - L1_Mur3 LINE L1 -9 5871 4850 4 1330 284 198 0 111 chr3 97754692 97754800 -61844983 - L1M2 LINE L1 -1688 4455 4360 4 1330 492 192 0 0 chr3 97754801 97754900 -61844883 + CT-rich Low_complexity Low_complexity 3 101 0 4 1330 357 262 58 10 chr3 97754914 97755018 -61844765 - PB1D9 SINE Alu -2 118 10 4 1330 598 265 4 39 chr3 97755026 97755088 -61844695 - L1_Mur3 LINE L1 -1584 4296 4234 4 1330 181 0 69 0 chr3 97755088 97755117 -61844666 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 4 1330 598 265 4 39 chr3 97755117 97755286 -61844497 - L1_Mur3 LINE L1 -1647 4233 4073 4 1330 584 287 88 26 chr3 97755300 97755493 -61844290 + B3 SINE B2 1 205 -11 4 1330 888 144 0 2 chr3 97755514 97755930 -61843853 + (CA)n Simple_repeat Simple_repeat 1 414 0 4 1330 631 234 59 84 chr3 97755976 97756214 -61843569 - L1_Mur3 LINE L1 -1810 4070 3839 4 1330 318 344 109 14 chr3 97756437 97756720 -61843063 - L1MC4a LINE L1 -2007 5875 5566 4 1330 843 196 0 13 chr3 97756750 97756900 -61842883 + B1_Mur2 SINE Alu 2 149 0 4 1330 22 0 0 0 chr3 97756987 97757009 -61842774 + AT_rich Low_complexity Low_complexity 1 22 0 4 1330 245 254 0 0 chr3 97757454 97757513 -61842270 + A-rich Low_complexity Low_complexity 3 61 0 4 1330 217 260 106 39 chr3 97757709 97757743 -61842040 - PB1D7 SINE Alu -1 119 87 4 1330 1967 160 47 19 chr3 97757743 97758107 -61841676 - ORR1D1 LTR MaLR 0 374 1 4 1330 265 235 101 14 chr3 97758107 97758176 -61841607 - PB1D10 SINE Alu -34 83 9 4 1330 1219 104 27 11 chr3 97758191 97758375 -61841408 - B2_Mm2 SINE B2 -7 188 2 4 1330 339 335 77 31 chr3 97758375 97758698 -61841085 + HAL1 LINE L1 140 477 -2030 4 1330 1606 178 141 3 chr3 97758778 97759105 -61840678 - ORR1D1 LTR MaLR -2 372 1 4 1330 256 24 49 0 chr3 97759364 97759405 -61840378 + (CAAAAA)n Simple_repeat Simple_repeat 5 47 0 4 1330 756 296 59 18 chr3 97759658 97759930 -61839853 + B4A SINE B4 2 284 -8 4 1330 786 152 0 0 chr3 97760003 97760180 -61839603 + (CA)n Simple_repeat Simple_repeat 2 178 0 4 1330 251 290 115 39 chr3 97760197 97760301 -61839482 - LTR16C LTR ERVL -222 267 156 4 1330 330 207 123 24 chr3 97760437 97760607 -61839176 + HAL1 LINE L1 1681 1894 -613 4 1330 642 153 0 0 chr3 97760781 97760892 -61838891 + CT-rich Low_complexity Low_complexity 1 111 0 4 1330 247 342 0 86 chr3 97761604 97761732 -61838051 - RSINE1 SINE B4 -34 131 15 4 1330 22 0 0 0 chr3 97762003 97762025 -61837758 + GC_rich Low_complexity Low_complexity 1 22 0 4 1330 269 203 16 0 chr3 97762088 97762152 -61837631 + PB1D10 SINE Alu 19 83 -34 4 1330 183 337 19 19 chr3 97762904 97763010 -61836773 - MIRm SINE MIR -101 175 70 4 1330 2103 58 11 11 chr3 97763038 97763317 -61836466 - L1Md_F2 LINE L1 -2 6580 6302 4 1330 304 284 43 0 chr3 97763470 97763586 -61836197 + ORR1E LTR MaLR 20 140 -219 4 1330 488 320 52 49 chr3 97763605 97763891 -61835892 + B4A SINE B4 5 291 -1 4 1330 252 0 0 0 chr3 97763942 97763970 -61835813 + (CA)n Simple_repeat Simple_repeat 2 29 0 4 1330 337 263 64 21 chr3 97764248 97764388 -61835395 + L1MC1 LINE L1 5993 6138 -195 4 1330 351 250 0 22 chr3 97764427 97764517 -61835266 + L1MC1 LINE L1 6242 6329 -4 4 1330 342 0 0 0 chr3 97764563 97764601 -61835182 + (TC)n Simple_repeat Simple_repeat 2 39 0 4 1330 661 200 49 14 chr3 97764603 97764745 -61835038 - B1_Mur2 SINE Alu 0 149 3 4 1330 282 56 0 0 chr3 97765057 97765093 -61834690 + (TC)n Simple_repeat Simple_repeat 2 37 0 4 1330 466 324 0 0 chr3 97765815 97765954 -61833829 - B1F SINE Alu -10 139 1 4 1330 314 0 49 0 chr3 97767123 97767164 -61832619 + (TTTTA)n Simple_repeat Simple_repeat 3 45 0 4 1330 1109 82 0 14 chr3 97767177 97767325 -61832458 - B1_Mus1 SINE Alu -1 147 2 4 1330 26 50 0 0 chr3 97767329 97767369 -61832414 + AT_rich Low_complexity Low_complexity 1 40 0 4 1330 326 167 200 12 chr3 97767413 97767498 -61832285 - B3A SINE B2 -97 101 1 4 1330 1403 83 16 0 chr3 97767866 97768058 -61831725 - B2_Mm2 SINE B2 0 195 1 4 1330 1131 50 0 14 chr3 97768108 97768249 -61831534 - B1_Mm SINE Alu -8 139 1 4 1330 422 263 0 73 chr3 97768306 97768429 -61831354 - PB1D10 SINE Alu 0 117 4 4 1330 266 264 35 78 chr3 97768915 97769030 -61830753 - AmnSINE1 SINE SINE -166 409 300 4 1330 250 333 57 14 chr3 97769524 97769664 -61830119 + MIR SINE MIR 53 198 -64 5 1330 389 274 13 70 chr3 97769800 97769957 -61829826 + Lx6 LINE L1 7286 7433 -27 5 1330 830 245 10 35 chr3 97771036 97771239 -61828544 - B3A SINE B2 0 198 1 5 1330 2027 133 99 41 chr3 97771395 97771570 -61828213 - ORR1C2 LTR MaLR 0 384 191 5 1330 655 50 0 20 chr3 97771570 97771672 -61828111 + (GA)n Simple_repeat Simple_repeat 2 101 0 5 1330 2027 133 99 41 chr3 97771672 97771858 -61827925 - ORR1C2 LTR MaLR -194 190 3 5 1330 305 100 20 0 chr3 97772014 97772064 -61827719 + (GGAGAA)n Simple_repeat Simple_repeat 3 53 0 5 1330 254 360 39 28 chr3 97772201 97772381 -61827402 + MIRb SINE MIR 39 220 -48 5 1330 431 66 43 21 chr3 97773609 97773702 -61826081 + (TCTCTG)n Simple_repeat Simple_repeat 2 96 0 5 1330 218 312 0 0 chr3 97773702 97773766 -61826017 + (CA)n Simple_repeat Simple_repeat 1 64 0 5 1330 1045 153 25 20 chr3 97773950 97774150 -61825633 - URR1B DNA MER1_type -1 224 24 5 1330 324 83 0 0 chr3 97774411 97774459 -61825324 + (TTCA)n Simple_repeat Simple_repeat 1 48 0 5 1330 1400 89 16 0 chr3 97774649 97774839 -61824944 - B2_Mm2 SINE B2 -1 194 2 5 1330 465 19 0 0 chr3 97776789 97776843 -61822940 + (TG)n Simple_repeat Simple_repeat 2 55 0 5 1330 279 273 26 0 chr3 97776843 97776920 -61822863 - MIRc SINE MIR -121 147 69 5 1330 1042 342 79 27 chr3 97777903 97778384 -61821399 + Charlie24 DNA MER1_type 709 1214 -1236 5 1330 270 305 51 66 chr3 97779223 97779360 -61820423 - MIRb SINE MIR -17 251 117 5 166 1159 210 175 19 chr3 97779423 97779743 -61820040 - ORR1D2 LTR MaLR 0 370 1 5 1331 468 0 0 0 chr3 97779762 97779814 -61819969 + (TG)n Simple_repeat Simple_repeat 2 53 0 5 1331 449 241 55 9 chr3 97780272 97780381 -61819402 + PB1D9 SINE Alu 6 119 -1 5 1331 215 220 0 17 chr3 97781584 97781644 -61818139 + C-rich Low_complexity Low_complexity 3 61 0 5 1331 496 278 58 36 chr3 97781675 97781813 -61817970 - B1F SINE Alu -8 141 1 5 1331 640 262 20 96 chr3 97781849 97782098 -61817685 + RLTR11B LTR ERVK 1 230 -223 5 1331 429 285 147 97 chr3 97782351 97782876 -61816907 - MLT1M LTR MaLR -121 551 1 5 1331 737 206 20 163 chr3 97783521 97783724 -61816059 - B3A SINE B2 0 198 21 5 1331 516 72 0 0 chr3 97783744 97783813 -61815970 + (TTTA)n Simple_repeat Simple_repeat 4 72 0 5 1331 985 167 194 0 chr3 97783815 97783995 -61815788 - B3 SINE B2 0 216 2 5 1331 670 263 15 54 chr3 97784000 97784205 -61815578 - B3A SINE B2 0 198 2 5 1331 24 0 0 0 chr3 97784205 97784229 -61815554 + AT_rich Low_complexity Low_complexity 1 24 0 5 1331 316 319 45 85 chr3 97785285 97785323 -61814460 - B3A SINE B2 0 198 11 5 1331 600 256 13 38 chr3 97785323 97785481 -61814302 - RSINE1 SINE B4 0 165 12 5 1331 2835 134 5 0 chr3 97785497 97785916 -61813867 - MTC LTR MaLR 0 421 1 5 1331 197 315 152 9 chr3 97785919 97786031 -61813752 + L2a LINE L2 3283 3410 -16 5 1331 346 298 0 9 chr3 97786366 97786471 -61813312 + PB1D10 SINE Alu 1 104 -13 5 1331 4106 118 126 8 chr3 97786825 97787484 -61812299 + RMER19A LTR ERVK 1 737 0 5 1331 249 159 0 0 chr3 97787876 97787920 -61811863 + A-rich Low_complexity Low_complexity 3 46 0 5 1331 304 254 14 14 chr3 97788057 97788129 -61811654 + B4A SINE B4 6 77 -215 5 1331 229 235 0 23 chr3 97788262 97788349 -61811434 + (CA)n Simple_repeat Simple_repeat 2 86 0 5 1331 191 376 0 45 chr3 97789011 97789100 -61810683 - L2a LINE L2 -5 3421 3337 5 1331 788 298 72 25 chr3 97789299 97789575 -61810208 - B4A SINE B4 0 292 4 5 1331 577 277 96 16 chr3 97790546 97790733 -61809050 - MIR SINE MIR -29 233 32 5 1331 268 339 15 23 chr3 97790776 97790906 -61808877 - L5 LINE RTE -1146 1119 991 5 1331 33 0 0 0 chr3 97791043 97791076 -61808707 + AT_rich Low_complexity Low_complexity 1 33 0 5 1331 234 0 0 0 chr3 97791095 97791121 -61808662 + (TG)n Simple_repeat Simple_repeat 1 26 0 5 1331 516 105 0 0 chr3 97791121 97791197 -61808586 + (GA)n Simple_repeat Simple_repeat 2 77 0 5 1331 705 240 7 7 chr3 97791203 97791354 -61808429 - B3A SINE B2 -46 152 2 5 1331 288 222 83 0 chr3 97791624 97791696 -61808087 + PB1D10 SINE Alu 30 107 -10 5 1331 459 0 0 0 chr3 97791696 97791747 -61808036 + (CA)n Simple_repeat Simple_repeat 2 52 0 5 1331 21 82 0 0 chr3 97792183 97792232 -61807551 + AT_rich Low_complexity Low_complexity 1 49 0 5 1331 408 20 0 0 chr3 97792232 97792281 -61807502 + (TG)n Simple_repeat Simple_repeat 2 50 0 5 1331 550 243 0 0 chr3 97792284 97792395 -61807388 - RSINE1 SINE B4 -40 125 15 5 1331 416 197 183 25 chr3 97792453 97792573 -61807210 - ID_B1 SINE B4 -2 222 84 5 1331 411 21 0 0 chr3 97792941 97792989 -61806794 + (TG)n Simple_repeat Simple_repeat 2 49 0 5 1331 271 326 27 61 chr3 97793991 97794138 -61805645 + B1F SINE Alu 7 148 -1 5 1331 765 199 8 0 chr3 97794186 97794317 -61805466 + B1_Mur2 SINE Alu 7 138 -11 5 1331 252 0 0 0 chr3 97794327 97794355 -61805428 + (TG)n Simple_repeat Simple_repeat 1 28 0 5 1331 596 331 0 0 chr3 97794371 97794522 -61805261 - B3A SINE B2 -47 151 1 5 1331 683 284 82 0 chr3 97794529 97794723 -61805060 - ID_B1 SINE B4 -6 218 9 5 1331 1351 164 0 13 chr3 97795205 97795433 -61804350 - URR1B DNA MER1_type 0 225 1 5 1331 275 278 121 24 chr3 97795561 97795727 -61804056 - MIR3 SINE MIR -3 205 24 5 1331 234 0 0 0 chr3 97796363 97796389 -61803394 + (T)n Simple_repeat Simple_repeat 1 26 0 5 1331 285 29 0 0 chr3 97797514 97797548 -61802235 + (GAAA)n Simple_repeat Simple_repeat 2 35 0 5 1331 263 275 0 0 chr3 97797781 97797891 -61801892 + (TA)n Simple_repeat Simple_repeat 1 110 0 5 1331 500 256 97 63 chr3 97797930 97798105 -61801678 + Charlie10 DNA MER1_type 71 251 -2571 5 1331 212 253 101 22 chr3 97798748 97798837 -61800946 + L2 LINE L2 2491 2586 -833 5 1331 418 359 77 14 chr3 97799269 97799478 -61800305 - MLT1D LTR MaLR 0 505 284 5 1331 180 0 0 0 chr3 97799547 97799567 -61800216 + (A)n Simple_repeat Simple_repeat 1 20 0 5 1331 281 265 65 111 chr3 97799993 97800146 -61799637 + MT2B LTR ERVL 119 264 -337 5 1331 644 213 8 0 chr3 97800041 97800168 -61799615 + B1_Mur1 SINE Alu 9 136 -13 5 1331 252 0 0 0 chr3 97800168 97800196 -61799587 + (TAAA)n Simple_repeat Simple_repeat 4 31 0 5 1331 504 282 136 34 chr3 97801283 97801518 -61798265 - MLT2B1 LTR ERVL -259 261 3 5 1331 768 202 0 0 chr3 97801831 97801932 -61797851 + polypyrimidine Low_complexity Low_complexity 79 179 0 5 1331 1327 90 5 46 chr3 97801932 97802129 -61797654 - B2_Mm2 SINE B2 -6 189 1 5 1331 768 202 0 0 chr3 97802129 97802205 -61797578 + polypyrimidine Low_complexity Low_complexity 3 78 0 5 1331 1241 35 0 0 chr3 97803104 97803247 -61796536 + B1_Mus1 SINE Alu 2 144 -4 5 1331 263 353 103 23 chr3 97803789 97803978 -61795805 + MIRb SINE MIR 13 221 -47 5 1331 1657 37 0 0 chr3 97805057 97805246 -61794537 + B2_Mm1t SINE B2 2 190 -3 5 1331 208 260 54 14 chr3 97805479 97805553 -61794230 - L2 LINE L2 -1345 2074 1998 5 1331 203 291 18 0 chr3 97805691 97805746 -61794037 + MER5A DNA MER1_type 134 189 0 5 1331 2455 124 71 22 chr3 97805760 97806171 -61793612 - RMER15 LTR ERVL -144 431 1 5 1331 217 345 80 0 chr3 97806287 97806400 -61793383 + L2c LINE L2 3212 3333 -54 5 1331 573 206 26 84 chr3 97806510 97806664 -61793119 + B1_Mur3 SINE Alu 5 149 0 5 1331 1139 82 0 7 chr3 97806671 97806819 -61792964 + B1_Mus1 SINE Alu 1 147 -1 5 1331 1609 42 5 0 chr3 97806822 97807013 -61792770 + B2_Mm1t SINE B2 2 193 0 5 1331 191 114 0 22 chr3 97807014 97807059 -61792724 + (CAAAC)n Simple_repeat Simple_repeat 1 44 0 5 1331 31 0 0 0 chr3 97807078 97807109 -61792674 + AT_rich Low_complexity Low_complexity 1 31 0 5 1331 838 300 55 21 chr3 97807702 97807937 -61791846 + B4A SINE B4 2 244 -48 5 1331 2841 107 203 2 chr3 97807947 97808434 -61791349 + RMER4B LTR ERVK 1 585 0 5 1331 195 69 0 0 chr3 97808475 97808504 -61791279 + (CA)n Simple_repeat Simple_repeat 1 29 0 5 1331 180 302 146 36 chr3 97809023 97809133 -61790650 + MIRb SINE MIR 122 243 -25 5 1331 315 0 0 0 chr3 97809203 97809238 -61790545 + (TG)n Simple_repeat Simple_repeat 2 36 0 5 1331 577 190 132 41 chr3 97809666 97809787 -61789996 + RSINE1 SINE B4 6 137 -28 5 1331 375 228 10 107 chr3 97811531 97811634 -61788149 - PB1D10 SINE Alu -7 110 18 5 1331 552 328 49 29 chr3 97812149 97812394 -61787389 + MIRc SINE MIR 14 263 -5 5 1331 360 152 0 0 chr3 97812609 97812675 -61787108 + (CA)n Simple_repeat Simple_repeat 1 66 0 5 1331 416 177 24 48 chr3 97812716 97812799 -61786984 + ID_B1 SINE B4 82 162 -62 5 1331 382 243 34 67 chr3 97812799 97812835 -61786948 + PB1D10 SINE Alu 1 115 -2 5 1331 804 286 107 50 chr3 97814083 97814524 -61785259 + RLTR11A2 LTR ERVK 1 466 -61 5 1331 222 37 0 0 chr3 97814778 97814805 -61784978 + (CA)n Simple_repeat Simple_repeat 2 28 0 5 1331 701 308 47 6 chr3 97814829 97814999 -61784784 - B4 SINE B4 -4 288 112 5 1331 653 264 45 28 chr3 97815058 97815237 -61784546 - B3A SINE B2 -16 182 1 5 1331 1072 190 47 33 chr3 97815609 97815821 -61783962 - B3 SINE B2 0 216 2 6 1331 260 155 19 76 chr3 97815905 97816010 -61783773 + (TATATG)n Simple_repeat Simple_repeat 1 99 0 6 1331 799 259 78 57 chr3 97816017 97816299 -61783484 - B4A SINE B4 0 292 5 6 1331 209 200 0 0 chr3 97816998 97817033 -61782750 + (TGGA)n Simple_repeat Simple_repeat 2 36 0 6 1331 210 283 221 0 chr3 97818371 97818484 -61781299 + MIRb SINE MIR 84 221 -47 6 1331 22 0 0 0 chr3 97820314 97820336 -61779447 + AT_rich Low_complexity Low_complexity 1 22 0 6 1331 339 44 0 0 chr3 97820669 97820714 -61779069 + (TG)n Simple_repeat Simple_repeat 1 45 0 6 1331 229 318 29 10 chr3 97820937 97821024 -61778759 + MIR SINE MIR 9 97 -171 6 1331 245 265 29 0 chr3 97821844 97821912 -61777871 - PB1D10 SINE Alu -42 75 6 6 1331 215 244 36 71 chr3 97821912 97821928 -61777855 - ID_B1 SINE B4 -68 156 76 6 1331 739 266 106 5 chr3 97822488 97822696 -61777087 + B4A SINE B4 2 230 -62 6 1331 797 235 22 16 chr3 97822697 97822879 -61776904 + B3A SINE B2 1 183 -15 6 1331 494 284 22 22 chr3 97823251 97823388 -61776395 - B1F SINE Alu -3 146 10 6 1331 267 283 59 20 chr3 97825828 97825929 -61773854 + PB1D7 SINE Alu 2 106 -14 6 1331 461 311 153 26 chr3 97826534 97826874 -61772909 - L1ME4a LINE L1 -44 6080 5698 6 1331 828 184 123 37 chr3 97826875 97827084 -61772699 + B3 SINE B2 4 214 -2 6 1331 262 221 147 0 chr3 97827482 97827550 -61772233 + ID4_ SINE ID 3 80 -3 6 1331 356 196 186 0 chr3 97827705 97827802 -61771981 - PB1D9 SINE Alu 0 120 6 6 1331 269 162 49 86 chr3 97827733 97827814 -61771969 - MT2B LTR ERVL -360 241 164 6 1331 294 62 146 0 chr3 97827888 97827936 -61771847 - PB1D7 SINE Alu 0 120 66 6 1331 600 248 43 7 chr3 97827894 97828032 -61771751 - ID_B1 SINE B4 -6 218 76 6 1331 581 40 0 13 chr3 97828788 97828865 -61770918 + (TTTC)n Simple_repeat Simple_repeat 2 77 0 6 1331 219 360 98 12 chr3 97830236 97830399 -61769384 + MIR SINE MIR 63 239 -23 6 1331 683 231 112 75 chr3 97830763 97830950 -61768833 - B3A SINE B2 -1 194 1 6 1331 293 366 23 8 chr3 97831153 97831285 -61768498 - MIRm SINE MIR -118 158 25 6 1331 189 244 98 0 chr3 97832083 97832124 -61767659 - L2a LINE L2 -74 3352 3308 6 1331 26 0 0 0 chr3 97832603 97832629 -61767154 + AT_rich Low_complexity Low_complexity 1 26 0 6 1331 317 342 48 13 chr3 97833299 97833457 -61766326 + MIRc SINE MIR 30 188 -74 6 1331 227 331 68 23 chr3 97834260 97834393 -61765390 - MIRc SINE MIR -128 140 2 6 1331 665 219 0 33 chr3 97834734 97834885 -61764898 + B1F1 SINE Alu 3 148 -1 6 1331 544 311 24 90 chr3 97834897 97835063 -61764720 + RSINE1 SINE B4 11 165 0 6 1331 441 218 81 0 chr3 97835855 97835942 -61763841 + PB1D10 SINE Alu 3 96 -21 6 1331 279 79 0 0 chr3 97835943 97835981 -61763802 + (GA)n Simple_repeat Simple_repeat 1 38 0 6 1331 282 73 0 0 chr3 97836125 97836166 -61763617 + (TG)n Simple_repeat Simple_repeat 1 41 0 6 1331 215 140 0 20 chr3 97836592 97836643 -61763140 + (TA)n Simple_repeat Simple_repeat 2 51 0 6 1331 204 158 0 0 chr3 97836664 97836702 -61763081 + (CATATA)n Simple_repeat Simple_repeat 4 41 0 6 1331 293 242 158 0 chr3 97837775 97837870 -61761913 - L2a LINE L2 -4 3422 3313 6 1331 1024 210 14 33 chr3 97838090 97838302 -61761481 + B3 SINE B2 1 208 -8 6 1331 297 0 0 0 chr3 97838306 97838339 -61761444 + (TG)n Simple_repeat Simple_repeat 2 34 0 6 1331 286 250 11 121 chr3 97839288 97839379 -61760404 - Charlie7a DNA MER1_type -191 81 1 6 1331 356 40 20 0 chr3 97840494 97840544 -61759239 + (CA)n Simple_repeat Simple_repeat 1 51 0 6 1331 507 291 105 55 chr3 97840584 97840784 -61758999 + B3 SINE B2 2 211 -5 6 1331 1033 193 30 30 chr3 97840867 97841070 -61758713 - B3 SINE B2 -13 203 1 6 1331 278 311 90 32 chr3 97842047 97842203 -61757580 + MIRb SINE MIR 55 219 -49 6 1331 21 36 0 0 chr3 97842615 97842643 -61757140 + AT_rich Low_complexity Low_complexity 1 28 0 6 1331 228 213 0 0 chr3 97843430 97843477 -61756306 + G-rich Low_complexity Low_complexity 1 47 0 6 1331 219 36 0 0 chr3 97844384 97844412 -61755371 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 6 1331 281 236 0 132 chr3 97845252 97845335 -61754448 - B3A SINE B2 0 198 127 6 1331 464 143 0 12 chr3 97846091 97846176 -61753607 + GA-rich Low_complexity Low_complexity 2 85 0 6 1331 231 36 0 0 chr3 97846176 97846204 -61753579 + (CCA)n Simple_repeat Simple_repeat 1 28 0 6 1331 440 219 42 0 chr3 97846329 97846425 -61753358 + B1F SINE Alu 35 134 -15 6 1331 183 362 67 25 chr3 97848262 97848381 -61751402 + L2a LINE L2 3202 3325 -101 6 1331 717 209 14 7 chr3 97848460 97848600 -61751183 + B1_Mur2 SINE Alu 1 141 -8 6 1331 198 284 174 31 chr3 97848805 97848903 -61750880 + MER5A DNA MER1_type 73 184 -5 6 1331 189 0 0 0 chr3 97848990 97849011 -61750772 + (T)n Simple_repeat Simple_repeat 1 21 0 6 1331 636 179 6 76 chr3 97849266 97849423 -61750360 + ID_B1 SINE B4 79 224 0 6 1331 1014 66 0 56 chr3 97849284 97849428 -61750355 + B1_Mus1 SINE Alu 13 148 0 6 1331 205 27 81 0 chr3 97849439 97849476 -61750307 + (CAAAAA)n Simple_repeat Simple_repeat 4 43 0 6 1331 476 316 32 84 chr3 97849586 97849894 -61749889 - B4A SINE B4 0 292 1 6 1331 214 230 135 0 chr3 97849957 97850031 -61749752 - MIRc SINE MIR -125 143 60 6 1331 312 284 31 26 chr3 97850391 97850535 -61749248 + MIR SINE MIR 17 169 -99 6 1331 744 185 20 7 chr3 97852373 97852520 -61747263 - B1_Mur2 SINE Alu 0 149 1 6 1331 1375 118 65 19 chr3 97853116 97853331 -61746452 - URR1B DNA MER1_type 0 225 1 6 1331 236 216 142 38 chr3 97853425 97853531 -61746252 - RMER15 LTR ERVL -154 421 305 6 1331 1319 89 6 16 chr3 97853998 97854180 -61745603 - B2_Mm2 SINE B2 -14 181 2 6 1331 496 279 0 28 chr3 97854311 97854448 -61745335 + B1_Mur1 SINE Alu 12 143 -7 6 1331 1024 186 19 24 chr3 97857146 97857355 -61742428 + B3 SINE B2 9 216 0 6 1331 565 313 84 0 chr3 97857618 97857832 -61741951 + MER96B DNA hAT 3 234 -183 6 1331 248 360 8 11 chr3 97857979 97858096 -61741687 - MIRm SINE MIR -75 201 83 6 1331 544 286 26 7 chr3 97858313 97858468 -61741315 - RSINE1 SINE B4 -4 161 4 6 1331 604 213 46 72 chr3 97861316 97861468 -61738315 - B1_Mur1 SINE Alu -1 148 1 6 1331 700 212 15 0 chr3 97862549 97862686 -61737097 - B3A SINE B2 -55 143 5 6 1331 356 221 58 11 chr3 97862694 97862781 -61737002 - MIRc SINE MIR -117 151 61 6 1331 253 288 15 0 chr3 97863367 97863433 -61736350 - MER106B DNA MER1_type -959 100 34 6 1331 198 0 0 0 chr3 97863513 97863535 -61736248 + (TTTA)n Simple_repeat Simple_repeat 1 22 0 6 1331 227 299 75 0 chr3 97863535 97863557 -61736226 - ID4 SINE ID -9 74 7 6 1331 240 122 49 0 chr3 97863557 97863598 -61736185 - tRNA-Cys-TGY tRNA tRNA -32 43 1 6 1331 330 34 33 33 chr3 97863703 97863764 -61736019 + (TTTTTG)n Simple_repeat Simple_repeat 2 62 0 6 1331 387 0 0 0 chr3 97864697 97864740 -61735043 + (CA)n Simple_repeat Simple_repeat 2 44 0 6 1331 267 318 0 12 chr3 97865141 97865227 -61734556 + CT-rich Low_complexity Low_complexity 4 88 0 6 1331 201 39 0 0 chr3 97866451 97866477 -61733306 + (TG)n Simple_repeat Simple_repeat 1 26 0 6 1331 270 0 0 0 chr3 97866477 97866506 -61733277 + (GA)n Simple_repeat Simple_repeat 1 30 0 6 1331 345 109 0 0 chr3 97866507 97866571 -61733212 + (TG)n Simple_repeat Simple_repeat 1 64 0 6 1331 276 30 0 0 chr3 97866571 97866603 -61733180 + (GA)n Simple_repeat Simple_repeat 1 33 0 6 1331 214 87 0 42 chr3 97866910 97866958 -61732825 + (CAAAA)n Simple_repeat Simple_repeat 2 47 0 6 1331 744 291 64 0 chr3 97868279 97868544 -61731239 - L1MB7 LINE L1 -224 5960 5679 6 1331 239 300 104 40 chr3 97868919 97869044 -61730739 + L3 LINE CR1 4351 4483 -6 6 1331 197 310 0 75 chr3 97870392 97870486 -61729297 + L2b LINE L2 2996 3082 -337 6 1331 541 234 23 23 chr3 97870548 97870679 -61729104 + B3 SINE B2 1 131 -85 6 1331 795 261 164 21 chr3 97870769 97870841 -61728942 - MER2 DNA MER2_type 0 345 257 6 1331 1274 125 10 5 chr3 97870841 97871034 -61728749 - B2_Mm2 SINE B2 0 195 2 6 1331 795 261 164 21 chr3 97871034 97871247 -61728536 - MER2 DNA MER2_type -89 256 19 6 1331 180 271 0 77 chr3 97871290 97871342 -61728441 + L2b LINE L2 3328 3375 0 6 1331 948 256 100 0 chr3 97871446 97871715 -61728068 - MER58B DNA MER1_type -1 340 45 6 1331 723 180 0 0 chr3 97872543 97872773 -61727010 + (TG)n Simple_repeat Simple_repeat 1 230 0 6 1331 726 184 0 0 chr3 97872792 97872971 -61726812 + (TG)n Simple_repeat Simple_repeat 1 179 0 6 1331 825 140 90 18 chr3 97872991 97873158 -61726625 - B3A SINE B2 -18 180 2 6 1331 417 237 229 0 chr3 97873916 97874034 -61725749 - B1F1 SINE Alu -4 145 1 6 1331 369 0 0 0 chr3 97874242 97874283 -61725500 + (GA)n Simple_repeat Simple_repeat 2 42 0 6 1331 360 285 49 93 chr3 97875124 97875329 -61724454 - ORR1D2 LTR MaLR 0 370 175 6 1331 246 246 203 0 chr3 97875375 97875444 -61724339 - ORR1D2 LTR MaLR -287 83 1 6 1331 441 0 0 0 chr3 97877165 97877214 -61722569 + (TG)n Simple_repeat Simple_repeat 2 50 0 6 1331 1159 209 0 0 chr3 97878008 97878214 -61721569 - B3 SINE B2 -6 210 5 6 1331 1000 126 31 0 chr3 97878216 97878375 -61721408 - URR1A DNA MER1_type 0 226 63 6 1331 237 222 0 0 chr3 97879064 97879127 -61720656 + (TG)n Simple_repeat Simple_repeat 1 63 0 7 1331 207 311 67 89 chr3 97879141 97879321 -61720462 - MIRb SINE MIR -92 176 1 7 1331 3539 31 7 5 chr3 97879929 97880347 -61719436 - L1Md_F2 LINE L1 -3 6579 6161 7 1331 214 333 47 85 chr3 97880359 97880595 -61719188 + L2a LINE L2 3155 3381 -45 7 1331 266 346 35 49 chr3 97881856 97881999 -61717784 + MIR3 SINE MIR 28 168 -40 7 1331 471 308 67 37 chr3 97882066 97882336 -61717447 - L1MB7 LINE L1 -9 6175 5898 7 1331 673 291 135 28 chr3 97882489 97883058 -61716725 - L1MB7 LINE L1 -532 5652 5026 7 1331 1267 99 119 0 chr3 97883058 97883260 -61716523 - URR1A DNA MER1_type 0 226 1 7 1331 495 271 184 35 chr3 97883260 97883344 -61716439 - L1MB7 LINE L1 -1121 5025 4923 7 1331 646 237 120 11 chr3 97883789 97883964 -61715819 - MTC LTR MaLR 0 421 228 7 1331 184 307 123 29 chr3 97884710 97884881 -61714902 - MIRc SINE MIR -66 202 16 7 1331 277 241 25 12 chr3 97885318 97885398 -61714385 + CT-rich Low_complexity Low_complexity 4 84 0 7 1331 230 232 203 0 chr3 97885403 97885472 -61714311 - ID4_ SINE ID 0 83 1 7 1331 293 306 58 77 chr3 97886641 97886797 -61712986 + MT2B LTR ERVL 124 276 -325 7 1331 625 219 24 0 chr3 97886687 97886810 -61712973 + B1_Mur2 SINE Alu 10 135 -14 7 1331 261 270 0 0 chr3 97886835 97886924 -61712859 + (TG)n Simple_repeat Simple_repeat 2 90 0 7 1331 497 308 18 30 chr3 97886927 97887091 -61712692 - RSINE1 SINE B4 0 165 4 7 1331 402 311 137 14 chr3 97889470 97889747 -61710036 + MER33 DNA MER1_type 14 324 0 7 1331 360 0 0 0 chr3 97890713 97890753 -61709030 + (TG)n Simple_repeat Simple_repeat 1 40 0 7 1331 425 235 193 7 chr3 97892006 97892156 -61707627 - B3A SINE B2 -19 179 2 7 1331 468 282 31 0 chr3 97892167 97892330 -61707453 - L1M1 LINE L1 -477 5823 5656 7 1331 309 51 0 0 chr3 97892342 97892381 -61707402 + (TG)n Simple_repeat Simple_repeat 2 40 0 7 1331 991 179 12 6 chr3 97892382 97892545 -61707238 - B3 SINE B2 -52 164 1 7 1331 340 224 179 50 chr3 97892545 97892724 -61707059 - L1M1 LINE L1 -684 5616 5415 7 1331 588 73 0 0 chr3 97894510 97894592 -61705191 + (TG)n Simple_repeat Simple_repeat 1 82 0 7 1331 226 354 110 24 chr3 97895374 97895620 -61704163 - L2b LINE L2 -162 3213 2947 7 1331 236 321 60 0 chr3 97895633 97895717 -61704066 - L2b LINE L2 -558 2861 2773 7 1331 194 287 137 17 chr3 97896614 97896731 -61703052 + MIR3 SINE MIR 47 177 -31 7 1331 181 316 0 17 chr3 97897185 97897243 -61702540 + MER5A DNA MER1_type 14 70 -119 7 1331 373 240 0 13 chr3 97897977 97898053 -61701730 + ID4 SINE ID 2 76 -7 7 1331 255 133 16 48 chr3 97898618 97898681 -61701102 + (CACCC)n Simple_repeat Simple_repeat 1 61 0 7 1331 315 0 0 0 chr3 97899376 97899411 -61700372 + (TC)n Simple_repeat Simple_repeat 1 35 0 7 1331 323 326 0 0 chr3 97899421 97899540 -61700243 + C-rich Low_complexity Low_complexity 1 119 0 7 1331 291 228 0 0 chr3 97899557 97899649 -61700134 + (CTCA)n Simple_repeat Simple_repeat 1 92 0 7 1331 30 45 0 0 chr3 97900388 97900432 -61699351 + AT_rich Low_complexity Low_complexity 1 44 0 7 1331 932 122 7 21 chr3 97900434 97900577 -61699206 - B1_Mur3 SINE Alu -8 141 1 7 1331 332 133 17 0 chr3 97901492 97901552 -61698231 + (TTCC)n Simple_repeat Simple_repeat 4 64 0 7 1331 770 172 135 27 chr3 97901556 97901741 -61698042 - B3 SINE B2 -10 206 2 7 1331 309 236 144 11 chr3 97902989 97903079 -61696704 - MER53 DNA hAT -85 108 7 7 1331 666 277 47 16 chr3 97903719 97903910 -61695873 + B3A SINE B2 2 198 0 7 1331 518 266 157 30 chr3 97904925 97905233 -61694550 - ORR1E LTR MaLR 0 379 1 7 1331 835 203 67 6 chr3 97907012 97907152 -61692631 + B3 SINE B2 7 149 -67 7 1331 342 0 0 0 chr3 97907152 97907190 -61692593 + (CA)n Simple_repeat Simple_repeat 1 38 0 7 1331 835 203 67 6 chr3 97907190 97907227 -61692556 + B3 SINE B2 150 194 -22 7 1331 444 295 23 8 chr3 97907502 97907635 -61692148 + RSINE1 SINE B4 2 136 -29 7 1331 24 53 0 0 chr3 97907653 97907691 -61692092 + AT_rich Low_complexity Low_complexity 1 38 0 7 1332 424 300 38 8 chr3 97912902 97913033 -61686750 + B1F1 SINE Alu 7 141 -8 7 1332 233 247 27 27 chr3 97913075 97913150 -61686633 + B4 SINE B4 1 75 -217 7 1332 372 208 19 42 chr3 97913090 97913218 -61686565 + ID4_ SINE ID 15 132 -20 7 1332 216 163 0 0 chr3 97913864 97913907 -61685876 + A-rich Low_complexity Low_complexity 1 43 0 7 1332 564 56 0 0 chr3 97914529 97914601 -61685182 + (TTTA)n Simple_repeat Simple_repeat 2 73 0 7 1332 693 248 22 0 chr3 97914603 97914740 -61685043 - B3A SINE B2 -46 152 13 7 1332 717 179 7 36 chr3 97916698 97916837 -61682946 + B1F SINE Alu 15 149 0 7 1332 2051 138 89 22 chr3 97917888 97918257 -61681526 - MTC LTR MaLR -27 394 1 7 1332 333 103 0 42 chr3 97918394 97918465 -61681318 + (TCCCC)n Simple_repeat Simple_repeat 3 70 0 7 1332 374 305 14 71 chr3 97919538 97919679 -61680104 + RMER15 LTR ERVL 305 437 -138 7 1332 951 138 18 25 chr3 97920353 97920516 -61679267 + URR1A DNA MER1_type 64 225 -1 7 1332 949 149 133 0 chr3 97922358 97922546 -61677237 - MTD LTR MaLR 0 419 207 7 1332 648 0 0 0 chr3 97922547 97922619 -61677164 + (TTCC)n Simple_repeat Simple_repeat 2 73 0 7 1332 3582 176 75 39 chr3 97922644 97923435 -61676348 - RMER1A Other Other -1 1029 211 7 1332 565 200 174 15 chr3 97923482 97923614 -61676169 - MTD LTR MaLR -206 213 61 7 1332 376 284 64 0 chr3 97923850 97923959 -61675824 - B1F SINE Alu -33 116 1 7 1332 1409 85 16 11 chr3 97925547 97925737 -61674046 - B2_Mm2 SINE B2 -4 191 1 7 1332 251 267 17 0 chr3 97926475 97926535 -61673248 + GA-rich Low_complexity Low_complexity 3 63 0 7 1332 280 331 68 79 chr3 97926535 97926725 -61673058 - ORR1E LTR MaLR -168 191 4 7 1332 22 0 0 0 chr3 97928573 97928595 -61671188 + AT_rich Low_complexity Low_complexity 1 22 0 7 1332 1159 75 0 13 chr3 97928664 97928813 -61670970 + B1_Mus1 SINE Alu 2 148 0 7 1332 195 42 0 0 chr3 97928813 97928837 -61670946 + (A)n Simple_repeat Simple_repeat 1 24 0 7 1332 538 314 73 92 chr3 97928926 97929295 -61670488 + LTR55 LTR ERV 13 374 -174 7 1332 280 387 0 0 chr3 97929417 97929572 -61670211 + C-rich Low_complexity Low_complexity 1 155 0 7 1332 936 117 0 0 chr3 97931061 97931206 -61668577 + (TCCA)n Simple_repeat Simple_repeat 3 147 0 7 1332 308 309 167 0 chr3 97931306 97931432 -61668351 - HAL1-3A_ME LINE L1 -423 2435 2289 7 1332 309 327 39 26 chr3 97931478 97931632 -61668151 - HAL1-3A_ME LINE L1 -421 2437 2282 7 1332 351 65 0 0 chr3 97932138 97932184 -61667599 + (CAAT)n Simple_repeat Simple_repeat 4 49 0 7 1332 183 204 0 0 chr3 97932193 97932237 -61667546 + CT-rich Low_complexity Low_complexity 3 46 0 7 1332 849 154 28 0 chr3 97932255 97932398 -61667385 - B1_Mur3 SINE Alu -2 147 1 7 1332 343 306 104 89 chr3 97933685 97933965 -61665818 - L1M5 LINE L1 -826 5320 5037 7 1332 1123 115 18 0 chr3 97936151 97936316 -61663467 + B2_Mm2 SINE B2 2 169 -26 7 1332 383 166 163 36 chr3 97936385 97936503 -61663280 + B2_Mm2 SINE B2 47 193 0 7 1332 391 46 15 30 chr3 97937961 97938028 -61661755 + (TTTTG)n Simple_repeat Simple_repeat 1 66 0 7 1332 1200 54 7 0 chr3 97938028 97938175 -61661608 - B1_Mus1 SINE Alu 0 148 1 7 1332 180 0 0 0 chr3 97938358 97938378 -61661405 + (CCCTG)n Simple_repeat Simple_repeat 4 23 0 7 1332 240 111 0 0 chr3 97940492 97940537 -61659246 + (TG)n Simple_repeat Simple_repeat 2 46 0 7 1332 482 229 136 0 chr3 97940539 97940657 -61659126 - ID_B1 SINE B4 -11 213 80 7 1332 449 300 8 0 chr3 97943055 97943175 -61656608 + RSINE1 SINE B4 1 121 -44 7 1332 426 255 188 44 chr3 97943193 97943353 -61656430 + B3A SINE B2 2 184 -14 7 1332 235 271 57 162 chr3 97943288 97943517 -61656266 + LTR75 LTR ERVL 16 220 -342 7 1332 817 122 243 0 chr3 97944035 97944216 -61655567 + Lx9 LINE L1 7414 7638 -6 7 1332 1219 39 0 0 chr3 97944675 97944829 -61654954 + B2_Mm2 SINE B2 1 154 -41 7 1332 444 37 0 0 chr3 97944831 97944885 -61654898 + (TGAA)n Simple_repeat Simple_repeat 4 57 0 7 1332 456 67 0 0 chr3 97944928 97944988 -61654795 + (GGAA)n Simple_repeat Simple_repeat 3 62 0 7 1332 258 352 33 0 chr3 97944988 97945079 -61654704 + G-rich Low_complexity Low_complexity 1 94 0 7 1332 399 41 0 0 chr3 97945079 97945128 -61654655 + (GGAAA)n Simple_repeat Simple_repeat 1 49 0 7 1332 406 293 119 8 chr3 97945712 97945846 -61653937 + RSINE1 SINE B4 13 161 -4 7 1332 771 184 168 0 chr3 97945949 97946128 -61653655 + B3 SINE B2 2 210 -6 7 1332 232 167 0 0 chr3 97946253 97946295 -61653488 - ORR1C1 LTR MaLR 0 384 343 7 1332 964 130 6 56 chr3 97946281 97946297 -61653486 - ORR1C1 LTR MaLR -208 170 163 7 1332 251 87 43 0 chr3 97946297 97946343 -61653440 + (CAGA)n Simple_repeat Simple_repeat 2 49 0 7 1332 964 130 6 56 chr3 97946343 97946505 -61653278 - ORR1C1 LTR MaLR -216 162 1 7 1332 978 244 78 42 chr3 97947179 97947513 -61652270 - ORR1D2 LTR MaLR -24 346 1 7 1332 437 345 0 75 chr3 97947513 97947659 -61652124 + RSINE1 SINE B4 31 165 0 7 1332 249 256 11 43 chr3 97949502 97949596 -61650187 + CT-rich Low_complexity Low_complexity 4 94 0 7 1332 198 0 0 0 chr3 97953701 97953723 -61646060 + (T)n Simple_repeat Simple_repeat 1 22 0 7 1332 331 288 48 9 chr3 97955540 97955645 -61644138 + ID_B1 SINE B4 106 214 -10 7 1332 713 191 8 8 chr3 97956128 97956260 -61643523 + RSINE1 SINE B4 8 139 -26 7 1332 800 236 236 33 chr3 97956364 97956711 -61643072 - MTD LTR MaLR -17 404 23 7 1332 796 195 99 30 chr3 97956788 97956989 -61642794 + B3 SINE B2 2 216 0 7 1332 285 246 30 30 chr3 97957460 97957527 -61642256 + PB1D10 SINE Alu 43 109 -8 7 1332 519 268 129 49 chr3 97957537 97957800 -61641983 + B4A SINE B4 3 286 -6 8 1332 7292 74 17 65 chr3 97957868 97958479 -61641304 - L1VL4 LINE L1 -1575 1984 1406 8 1332 1201 68 0 0 chr3 97958479 97958627 -61641156 - B1_Mus1 SINE Alu 0 148 1 8 1332 7292 87 19 54 chr3 97958627 97959662 -61640121 - L1VL4 LINE L1 -2154 1405 401 8 1332 270 287 120 0 chr3 97959686 97959794 -61639989 + LTR41 LTR ERVL 63 183 -585 8 1332 688 64 45 34 chr3 97959896 97960073 -61639710 + (TG)n Simple_repeat Simple_repeat 1 179 0 8 1332 576 227 97 90 chr3 97960114 97960404 -61639379 - B4A SINE B4 0 292 1 8 1332 225 227 39 26 chr3 97961498 97961575 -61638208 - ORR1E LTR MaLR -11 368 291 8 1332 249 245 123 38 chr3 97961651 97961757 -61638026 - ORR1E LTR MaLR -157 202 88 8 1332 1361 40 0 0 chr3 97961897 97962073 -61637710 - RLTR22_Mus LTR ERVK -1449 359 184 8 1332 21 36 0 0 chr3 97962304 97962332 -61637451 + GC_rich Low_complexity Low_complexity 1 28 0 8 1332 333 0 0 0 chr3 97962590 97962627 -61637156 + (TTAG)n Simple_repeat Simple_repeat 2 38 0 8 1332 228 146 18 35 chr3 97962996 97963053 -61636730 + Lx2B LINE L1 6943 6998 -2 8 1332 225 0 0 0 chr3 97963093 97963118 -61636665 + (TC)n Simple_repeat Simple_repeat 1 25 0 8 1332 477 0 0 0 chr3 97963118 97963170 -61636613 + (CA)n Simple_repeat Simple_repeat 1 53 0 8 1332 784 279 71 25 chr3 97963191 97963474 -61636309 + Lx8 LINE L1 6886 7181 -292 8 1332 230 27 81 0 chr3 97963977 97964014 -61635769 + (TTTTG)n Simple_repeat Simple_repeat 1 40 0 8 1332 697 110 102 8 chr3 97964038 97964166 -61635617 - B1_Mur4 SINE Alu -2 148 9 8 1332 1000 98 0 0 chr3 97964346 97964489 -61635294 - B1_Mus1 SINE Alu 0 148 6 8 1332 270 202 23 45 chr3 97966960 97967048 -61632735 + Lx5 LINE L1 6965 7050 0 8 1332 282 336 112 37 chr3 97967334 97967575 -61632208 - RLTR12B LTR ERVK -250 278 20 8 1332 206 88 0 56 chr3 97967864 97967900 -61631883 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 8 1332 1731 197 82 18 chr3 97968634 97969022 -61630761 + MTD LTR MaLR 7 419 0 8 1332 265 278 84 34 chr3 97969387 97969566 -61630217 - L1MB4 LINE L1 -129 6051 5864 8 1332 269 261 11 74 chr3 97969781 97969876 -61629907 - L1MB4 LINE L1 -344 5839 5750 8 1332 455 313 34 29 chr3 97970026 97970259 -61629524 - Lx8 LINE L1 -232 7412 7109 8 1332 625 256 25 58 chr3 97970281 97970522 -61629261 - L1MB4 LINE L1 -437 5746 5514 8 1332 252 0 0 0 chr3 97970545 97970573 -61629210 + (CATA)n Simple_repeat Simple_repeat 3 30 0 8 1332 488 291 92 40 chr3 97970595 97970856 -61628927 - B4 SINE B4 -18 274 6 8 1332 431 254 50 34 chr3 97970856 97971082 -61628701 - L1MB4 LINE L1 -655 5528 5290 8 1332 290 221 38 60 chr3 97971064 97971247 -61628536 - L1MB4 LINE L1 -2914 3226 3035 8 1332 40 21 0 0 chr3 97971275 97971322 -61628461 + AT_rich Low_complexity Low_complexity 1 47 0 8 1332 1021 219 0 42 chr3 97971402 97971617 -61628166 - B3 SINE B2 -10 206 1 8 1332 375 207 35 0 chr3 97971704 97971791 -61627992 - L1MB4 LINE L1 -3290 2850 2761 8 1332 9198 179 55 20 chr3 97971790 97973710 -61626073 - Lx6 LINE L1 0 7460 5459 8 1332 1768 132 7 0 chr3 97973700 97973980 -61625803 + L1_Mur3 LINE L1 3645 3926 -1954 8 1332 5239 148 90 51 chr3 97973989 97975082 -61624701 + L1_Mur3 LINE L1 4320 5454 -426 8 1332 406 278 199 16 chr3 97975140 97975397 -61624386 - L1MB4 LINE L1 -3475 2671 2368 8 1332 867 247 49 23 chr3 97975559 97975858 -61623925 - L1M2 LINE L1 -208 5672 5370 8 1332 568 198 33 19 chr3 97976001 97976142 -61623641 - B1_Mur1 SINE Alu -6 143 5 8 1332 1767 267 98 36 chr3 97976164 97976509 -61623274 - L1M2 LINE L1 -769 5374 5040 8 1332 968 181 166 0 chr3 97976509 97976702 -61623081 - URR1B DNA MER1_type 0 225 1 8 1332 1767 267 98 36 chr3 97976702 97977044 -61622739 - L1M2 LINE L1 -1104 5039 4635 8 1332 208 0 62 0 chr3 97977044 97977076 -61622707 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 8 1332 1767 267 98 36 chr3 97977076 97977226 -61622557 - L1M2 LINE L1 -1509 4634 4484 8 1332 822 225 21 58 chr3 97977235 97977476 -61622307 + RLTR11A2 LTR ERVK 24 255 -272 8 1332 1206 78 6 0 chr3 97977481 97977647 -61622136 + B2_Mm2 SINE B2 1 167 -28 8 1332 474 210 181 7 chr3 97977658 97977802 -61621981 + RLTR11A2 LTR ERVK 268 436 -91 8 1332 6443 214 58 127 chr3 97978161 97979050 -61620733 + L1_Mur1 LINE L1 3354 4282 -1604 8 1332 180 0 0 0 chr3 97979050 97979070 -61620713 + (CAA)n Simple_repeat Simple_repeat 2 21 0 8 1332 1146 83 0 0 chr3 97979079 97979236 -61620547 + B2_Mm2 SINE B2 4 160 -35 8 1332 6443 214 58 127 chr3 97979236 97980572 -61619211 + L1_Mur1 LINE L1 4291 5578 -308 8 1332 651 224 0 0 chr3 97981176 97981292 -61618491 + B3A SINE B2 4 119 -79 8 1332 441 0 0 0 chr3 97981306 97981355 -61618428 + (CA)n Simple_repeat Simple_repeat 2 50 0 8 1332 815 342 124 53 chr3 97982308 97983434 -61616349 + MTE-int LTR MaLR 333 1538 -42 8 1332 1868 209 85 143 chr3 97983477 97984126 -61615657 - RMER19C LTR ERVK 0 611 1 8 1332 285 281 20 30 chr3 97984326 97984425 -61615358 + MLT1A1 LTR MaLR 307 404 -4 8 1332 486 0 0 0 chr3 97985305 97985359 -61614424 + (CAAAA)n Simple_repeat Simple_repeat 3 56 0 8 1332 309 311 58 21 chr3 97985439 97985664 -61614119 - L1MB4 LINE L1 -5332 1275 1145 8 1332 297 0 0 0 chr3 97985686 97985719 -61614064 + (TG)n Simple_repeat Simple_repeat 2 34 0 8 1332 734 108 87 47 chr3 97985722 97985849 -61613934 - B1_Mur3 SINE Alu -13 136 5 8 1332 2866 142 225 12 chr3 97986379 97986943 -61612840 - RMER6C LTR ERVK -2 688 5 8 1332 424 260 52 67 chr3 97987316 97987348 -61612435 - B2_Mm1t SINE B2 0 193 159 8 1332 255 31 0 0 chr3 97987348 97987380 -61612403 + (TG)n Simple_repeat Simple_repeat 1 32 0 8 1332 778 205 16 11 chr3 97987380 97987541 -61612242 - B3A SINE B2 -35 158 3 8 1332 187 216 0 0 chr3 97987546 97987583 -61612200 + MIRc SINE MIR 165 201 -67 8 1332 339 208 14 0 chr3 97987978 97988050 -61611733 - B1F1 SINE Alu -27 122 50 8 1332 519 331 99 33 chr3 97988436 97988944 -61610839 + L1MA5 LINE L1 5360 5927 -373 8 1332 387 0 0 0 chr3 97989420 97989463 -61610320 + (CA)n Simple_repeat Simple_repeat 1 43 0 8 1332 210 229 197 0 chr3 97989464 97989525 -61610258 - ID2 SINE ID -10 73 1 8 1332 322 21 0 41 chr3 97989945 97989994 -61609789 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 8 1332 953 246 35 0 chr3 97990008 97990211 -61609572 + B3 SINE B2 2 211 -5 8 1332 427 280 88 54 chr3 97990293 97990497 -61609286 - Lx8 LINE L1 -1054 6419 6209 8 1332 35 0 0 0 chr3 97990531 97990566 -61609217 + AT_rich Low_complexity Low_complexity 1 35 0 8 1332 1976 186 10 57 chr3 97990594 97990982 -61608801 - ORR1D1 LTR MaLR 0 374 5 8 1332 218 262 0 12 chr3 97990985 97991070 -61608713 + (TATATG)n Simple_repeat Simple_repeat 2 85 0 8 1332 1927 252 50 41 chr3 97991191 97991729 -61608054 + Lx8 LINE L1 6413 6955 -518 8 1332 1493 272 71 46 chr3 97991743 97992347 -61607436 + MER21B LTR ERV1 228 846 -17 8 1332 195 114 0 0 chr3 97992833 97992868 -61606915 + (TG)n Simple_repeat Simple_repeat 1 35 0 8 1332 836 95 0 0 chr3 97992935 97993061 -61606722 - B1_Mm SINE Alu 0 147 22 8 1332 205 204 23 0 chr3 97993132 97993176 -61606607 + CT-rich Low_complexity Low_complexity 1 45 0 8 1332 996 78 14 0 chr3 97995068 97995210 -61604573 - MT2B2 LTR ERVL -80 504 361 8 1332 300 337 51 15 chr3 97995292 97995491 -61604292 + MIR SINE MIR 45 252 -10 8 1332 280 325 13 0 chr3 97995548 97995625 -61604158 - ID4 SINE ID -4 79 2 8 1332 1145 78 0 0 chr3 97995760 97995901 -61603882 + B1_Mus1 SINE Alu 2 142 -6 8 1332 444 37 0 0 chr3 97995902 97995956 -61603827 + (TA)n Simple_repeat Simple_repeat 2 55 0 8 1332 944 125 24 36 chr3 97995956 97996122 -61603661 - B2_Mm2 SINE B2 -31 164 1 8 1332 464 256 388 0 chr3 97996181 97996385 -61603398 + B4A SINE B4 6 288 -4 8 1332 239 335 40 20 chr3 97996765 97996963 -61602820 + L1MD LINE L1 5386 5587 -2408 8 1332 465 289 92 20 chr3 97997071 97997322 -61602461 + L1ME3 LINE L1 5804 6072 -90 8 1332 414 57 0 0 chr3 97997431 97997484 -61602299 + (TG)n Simple_repeat Simple_repeat 1 53 0 8 1332 531 276 86 64 chr3 97997505 97997772 -61602011 - B4A SINE B4 -17 275 3 8 1332 211 261 0 0 chr3 97997811 97997857 -61601926 + B3A SINE B2 2 47 -151 8 1332 270 81 0 0 chr3 97997932 97997969 -61601814 + (T)n Simple_repeat Simple_repeat 1 37 0 8 1332 1271 20 0 0 chr3 97997969 97998115 -61601668 - B1_Mm SINE Alu 0 147 2 8 1332 973 190 45 15 chr3 97998268 97998466 -61601317 - B3 SINE B2 0 216 13 8 1332 378 0 0 0 chr3 97998664 97998706 -61601077 + (TG)n Simple_repeat Simple_repeat 2 43 0 8 1332 480 234 62 117 chr3 97998739 97998918 -61600865 - B4A SINE B4 0 292 124 8 1332 324 251 3 27 chr3 97998924 97999218 -61600565 + C-rich Low_complexity Low_complexity 1 286 0 8 1332 470 295 90 19 chr3 97999623 97999889 -61599894 - L1M4 LINE L1 -3179 2967 2683 8 1332 1918 202 87 65 chr3 98000399 98000906 -61598877 + RLTR28 LTR ERVL 3 520 -4 1 1332 812 236 34 6 chr3 98001147 98001322 -61598461 - B3A SINE B2 -18 180 1 2 1332 230 222 56 0 chr3 98001513 98001567 -61598216 + MLT1E1A LTR MaLR 195 251 -373 3 1332 705 333 32 86 chr3 98001578 98001637 -61598146 + MLT1E1A LTR MaLR 352 400 -254 3 1332 339 25 0 0 chr3 98001637 98001677 -61598106 + (CAGA)n Simple_repeat Simple_repeat 1 40 0 4 1332 736 314 28 40 chr3 98001677 98001932 -61597851 + MLT1E1A LTR MaLR 401 675 -5 3 1332 278 311 0 0 chr3 98002231 98002305 -61597478 - ID4_ SINE ID -8 75 2 5 1332 343 265 130 14 chr3 98002888 98003026 -61596757 - HAL1-3A_ME LINE L1 -419 2439 2286 6 1332 444 334 150 65 chr3 98003036 98003548 -61596235 - Lx8 LINE L1 -2 7471 6916 7 1332 880 169 16 0 chr3 98003981 98004227 -61595556 + CT-rich Low_complexity Low_complexity 1 250 0 8 1332 2702 200 140 20 chr3 98005117 98005886 -61593897 - Lx6 LINE L1 -9 7451 6588 9 1332 1620 0 0 0 chr3 98006012 98006192 -61593591 + (TCTCCC)n Simple_repeat Simple_repeat 1 180 0 1 1332 222 242 0 0 chr3 98006227 98006293 -61593490 + CT-rich Low_complexity Low_complexity 2 67 0 1 1332 707 163 32 8 chr3 98006458 98006582 -61593201 - Lx6 LINE L1 -868 6592 6466 9 1332 607 179 19 0 chr3 98006595 98006701 -61593082 + Lx6 LINE L1 6383 6490 -970 9 1332 678 221 95 36 chr3 98006700 98007009 -61592774 - L1_Mur3 LINE L1 -7434 278 88 1 1332 503 287 0 0 chr3 98007553 98007655 -61592128 + PB1 SINE Alu 2 103 -24 1 1332 470 311 66 0 chr3 98007655 98007777 -61592006 + RSINE1 SINE B4 2 131 -34 1 1332 387 0 0 0 chr3 98007806 98007849 -61591934 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 1332 564 287 92 12 chr3 98008213 98008463 -61591320 + L1ME2z LINE L1 5528 5797 -647 1 1332 550 234 72 8 chr3 98008522 98008647 -61591136 + B3A SINE B2 2 134 -64 1 1332 466 261 98 32 chr3 98008930 98009207 -61590576 + L1ME2z LINE L1 6080 6374 -70 1 1332 774 168 247 6 chr3 98009279 98009453 -61590330 + B3 SINE B2 1 216 0 1 1332 302 262 29 23 chr3 98009926 98010098 -61589685 + G-rich Low_complexity Low_complexity 2 174 0 1 1332 283 293 0 101 chr3 98010541 98010670 -61589113 + ID_B1 SINE B4 109 224 0 2 1332 547 300 131 12 chr3 98011277 98011678 -61588105 + L1MA4 LINE L1 5500 5931 -1713 2 1332 297 277 123 90 chr3 98012021 98012176 -61587607 - MIR3 SINE MIR 0 268 109 2 1332 794 307 96 33 chr3 98012216 98012676 -61587107 - L1MB2 LINE L1 -17 6154 5659 2 1332 442 233 145 15 chr3 98012676 98012807 -61586976 - B1F SINE Alu -1 148 1 2 1332 794 307 96 33 chr3 98012807 98012855 -61586928 - L1MB2 LINE L1 -513 5658 5614 2 1332 226 308 74 43 chr3 98012855 98013018 -61586765 + MLT1A0 LTR MaLR 1 168 -197 2 1332 452 211 11 22 chr3 98013097 98013221 -61586562 - Lx6 LINE L1 -504 5787 5627 2 1332 304 273 114 35 chr3 98013283 98013397 -61586386 - Lx6 LINE L1 -838 5305 5183 2 1332 289 325 117 0 chr3 98013568 98013765 -61586018 + L1ME3 LINE L1 5533 5752 -412 2 1332 1571 205 34 77 chr3 98013768 98014211 -61585572 + RMER10A LTR ERVL 3 426 -16 2 1332 437 294 94 57 chr3 98014225 98014524 -61585259 + L1ME3 LINE L1 5749 6058 -104 2 1332 316 178 37 56 chr3 98015702 98015809 -61583974 + C-rich Low_complexity Low_complexity 3 107 0 2 1332 657 246 119 10 chr3 98016728 98016921 -61582862 - ID_B1 SINE B4 -8 216 3 3 1332 809 153 66 0 chr3 98016954 98017091 -61582692 + B1_Mus1 SINE Alu 1 146 -2 3 1332 234 328 88 9 chr3 98017653 98017767 -61582016 - LTR85b LTR Gypsy? 0 784 662 3 1332 195 42 0 0 chr3 98017831 98017855 -61581928 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 3 1332 878 254 36 36 chr3 98017947 98018168 -61581615 + ID_B1 SINE B4 2 222 -2 3 1332 231 36 0 0 chr3 98018168 98018196 -61581587 + (GGA)n Simple_repeat Simple_repeat 1 28 0 3 1332 1287 84 0 0 chr3 98018197 98018375 -61581408 + (GGAGAA)n Simple_repeat Simple_repeat 3 180 0 3 1332 725 152 18 22 chr3 98018603 98018827 -61580956 + CT-rich Low_complexity Low_complexity 1 222 0 3 1332 242 261 31 0 chr3 98018827 98018892 -61580891 - tRNA-Ala-GCA tRNA tRNA -7 68 2 3 1332 303 257 0 0 chr3 98019436 98019506 -61580277 + B4 SINE B4 1 70 -222 3 1332 27 29 0 0 chr3 98019877 98019911 -61579872 + AT_rich Low_complexity Low_complexity 1 34 0 4 1332 357 125 0 0 chr3 98019928 98019984 -61579799 + (TATATG)n Simple_repeat Simple_repeat 1 56 0 4 1332 320 149 43 29 chr3 98020208 98020277 -61579506 + ETnERV2-int LTR ERVK 7335 7404 -2 4 1332 1610 106 93 11 chr3 98020278 98020546 -61579237 + RLTR9A LTR ERVK 1 290 -78 4 1332 906 36 0 0 chr3 98020546 98020656 -61579127 + (TCCC)n Simple_repeat Simple_repeat 4 113 0 4 1332 1090 222 135 41 chr3 98020656 98020706 -61579077 + RLTR9A LTR ERVK 306 348 -35 4 1332 6618 186 47 10 chr3 98020708 98021974 -61577809 - Lx5 LINE L1 -47 7003 5691 4 1332 248 154 0 0 chr3 98021974 98022013 -61577770 - B3 SINE B2 -177 39 1 4 1332 279 54 0 0 chr3 98022116 98022153 -61577630 + (TG)n Simple_repeat Simple_repeat 1 37 0 4 1332 404 251 296 5 chr3 98022169 98022380 -61577403 - B4A SINE B4 -18 274 3 4 1332 226 213 33 0 chr3 98022596 98022657 -61577126 + T-rich Low_complexity Low_complexity 5 67 0 4 1332 246 156 0 0 chr3 98022898 98022943 -61576840 + (TTA)n Simple_repeat Simple_repeat 1 45 0 4 1332 1855 141 3 101 chr3 98022963 98023319 -61576464 - ORR1A4 LTR MaLR -8 321 1 5 1332 415 237 224 53 chr3 98023319 98023428 -61576355 - Lx9 LINE L1 -21 7623 7472 5 1332 342 0 0 0 chr3 98023428 98023466 -61576317 + (TG)n Simple_repeat Simple_repeat 2 39 0 5 1332 415 237 224 53 chr3 98023466 98023601 -61576182 - Lx9 LINE L1 -173 7471 7337 5 1332 944 250 19 9 chr3 98023605 98023815 -61575968 - B3 SINE B2 0 216 5 5 1332 393 181 0 53 chr3 98024001 98024077 -61575706 - ID_B1 SINE B4 -8 216 145 5 1332 382 232 27 150 chr3 98024077 98024148 -61575635 - B1F1 SINE Alu -8 141 13 5 1332 405 0 0 0 chr3 98024667 98024712 -61575071 + (TC)n Simple_repeat Simple_repeat 1 45 0 5 1332 645 228 35 64 chr3 98025215 98025388 -61574395 - B3A SINE B2 -4 194 27 5 1332 213 39 0 0 chr3 98026318 98026344 -61573439 + (CGTG)n Simple_repeat Simple_repeat 1 26 0 5 1332 358 219 0 58 chr3 98026391 98026478 -61573305 - RSINE1 SINE B4 -83 82 1 5 1332 330 266 90 90 chr3 98027443 98027621 -61572162 + L1M5 LINE L1 5191 5368 -778 6 1332 181 330 110 33 chr3 98028113 98028204 -61571579 - MIRc SINE MIR -157 111 14 6 1332 22 0 0 0 chr3 98028235 98028257 -61571526 + AT_rich Low_complexity Low_complexity 1 22 0 6 1332 201 74 0 0 chr3 98028604 98028631 -61571152 + (GAAAA)n Simple_repeat Simple_repeat 2 28 0 6 1332 329 77 0 37 chr3 98030458 98030512 -61569271 + (GAAAA)n Simple_repeat Simple_repeat 2 53 0 6 1332 352 344 12 72 chr3 98030612 98030778 -61569005 - MIRb SINE MIR -8 260 105 6 1332 356 319 101 10 chr3 98031089 98031298 -61568485 + MIR SINE MIR 21 248 -14 6 1332 877 294 12 37 chr3 98031495 98031739 -61568044 + MTEb LTR MaLR 141 378 -1 6 1332 968 261 27 14 chr3 98031914 98032135 -61567648 + ID_B1 SINE B4 1 224 0 6 1332 511 207 7 7 chr3 98032182 98032318 -61567465 + GA-rich Low_complexity Low_complexity 4 139 0 6 1332 657 281 127 13 chr3 98032921 98033220 -61566563 - ERVL-B4-int LTR ERVL -3555 2159 1827 7 1332 537 90 0 0 chr3 98033235 98033324 -61566459 + (TC)n Simple_repeat Simple_repeat 2 90 0 7 1332 781 253 132 16 chr3 98033348 98033537 -61566246 - ID_B1 SINE B4 -8 216 6 7 1332 269 281 56 0 chr3 98033544 98033633 -61566150 - ERVL-B4-int LTR ERVL -3869 1888 1795 7 1332 414 245 9 28 chr3 98034471 98034580 -61565203 + PB1D10 SINE Alu 5 111 -6 7 1332 234 174 22 0 chr3 98034811 98034857 -61564926 - MIR SINE MIR -75 133 87 7 1332 835 233 83 0 chr3 98035758 98035951 -61563832 - B3 SINE B2 -3 213 5 7 1332 749 220 0 0 chr3 98035960 98036101 -61563682 - B1_Mur1 SINE Alu -7 142 2 7 1332 21 36 0 0 chr3 98036102 98036130 -61563653 + AT_rich Low_complexity Low_complexity 1 28 0 7 1332 243 354 38 61 chr3 98036351 98036697 -61563086 + L1M5 LINE L1 5504 5841 -283 7 1332 225 386 65 7 chr3 98037419 98037573 -61562210 + L3 LINE CR1 4274 4436 -53 7 1332 289 219 124 6 chr3 98037902 98037990 -61561793 + B4 SINE B4 1 112 -180 8 1332 423 0 0 0 chr3 98037990 98038037 -61561746 + (TG)n Simple_repeat Simple_repeat 1 47 0 8 1332 255 250 225 42 chr3 98038037 98038090 -61561693 + B4A SINE B4 113 168 -124 8 1332 489 300 33 0 chr3 98038439 98038559 -61561224 + B1F SINE Alu 21 144 -5 8 1332 282 280 0 47 chr3 98038571 98038657 -61561126 + ID4 SINE ID 2 83 0 8 1332 455 146 0 58 chr3 98039075 98039134 -61560649 - MTC LTR MaLR -331 90 35 8 1332 1313 98 97 5 chr3 98039134 98039340 -61560443 - URR1B DNA MER1_type 0 225 1 8 1332 455 146 0 58 chr3 98039340 98039367 -61560416 - MTC LTR MaLR -387 34 9 8 1332 421 278 14 16 chr3 98039369 98039491 -61560292 + B3A SINE B2 82 202 -14 8 1332 378 236 0 0 chr3 98039501 98039624 -61560159 + (CA)n Simple_repeat Simple_repeat 2 124 0 8 1332 955 237 48 72 chr3 98039831 98040122 -61559661 - MLT2D LTR ERVL -128 286 3 8 1333 251 384 86 25 chr3 98041870 98042113 -61557670 - Charlie20a DNA Charlie -383 424 167 8 1333 228 143 0 0 chr3 98043428 98043470 -61556313 + (TG)n Simple_repeat Simple_repeat 1 42 0 9 1333 284 288 0 0 chr3 98043521 98043587 -61556196 - B4 SINE B4 -13 279 214 9 1333 467 155 165 0 chr3 98043612 98043709 -61556074 - B1_Mur1 SINE Alu 0 149 37 9 1333 675 299 87 87 chr3 98043668 98043932 -61555851 - B4 SINE B4 -20 272 9 9 1333 1296 74 45 17 chr3 98044121 98044300 -61555483 - B2_Mm1a SINE B2 -9 184 1 9 1333 3878 184 54 46 chr3 98044471 98045741 -61554042 - RMER1B Other Other 0 1066 3 9 1333 378 0 0 0 chr3 98045852 98045894 -61553889 + (TC)n Simple_repeat Simple_repeat 1 42 0 9 1333 1166 106 0 11 chr3 98045894 98046076 -61553707 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 9 1333 463 311 73 0 chr3 98046087 98046251 -61553532 - B3A SINE B2 -18 180 5 9 1333 986 259 142 0 chr3 98047124 98047371 -61552412 - B4A SINE B4 -5 287 6 9 1333 700 260 7 0 chr3 98047997 98048143 -61551640 + B1_Mur1 SINE Alu 3 149 0 1 1333 1428 60 49 5 chr3 98048147 98048332 -61551451 + B2_Mm2 SINE B2 2 194 -1 1 1333 2235 127 51 23 chr3 98048481 98048875 -61550908 - RMER6A LTR ERVK 0 756 352 1 1333 1269 80 0 0 chr3 98048873 98049036 -61550747 + RLTR23 LTR ERV1 268 430 0 1 1333 414 223 101 87 chr3 98049466 98049675 -61550108 + MTEb LTR MaLR 19 221 -158 1 1333 274 375 105 18 chr3 98050299 98050310 -61549473 + MIRb SINE MIR 17 26 -242 1 1333 797 85 17 0 chr3 98050310 98050428 -61549355 + (GAAA)n Simple_repeat Simple_repeat 2 121 0 1 1333 274 375 105 18 chr3 98050428 98050587 -61549196 + MIRb SINE MIR 27 201 -67 1 1333 1182 56 0 7 chr3 98051255 98051400 -61548383 - B1_Mus1 SINE Alu 0 148 5 1 1333 3647 31 28 9 chr3 98051684 98052112 -61547671 + RLTR10C LTR ERVK 1 436 0 1 1333 412 233 21 32 chr3 98052321 98052414 -61547369 + B3 SINE B2 125 216 0 1 1333 243 250 154 15 chr3 98052463 98052528 -61547255 + B4 SINE B4 21 94 -198 1 1333 567 314 18 89 chr3 98053024 98053248 -61546535 + B4 SINE B4 85 292 0 1 1333 601 255 197 74 chr3 98053279 98053299 -61546484 - MLT1E LTR MaLR 0 653 634 1 1333 525 32 0 0 chr3 98053299 98053362 -61546421 + (CA)n Simple_repeat Simple_repeat 2 64 0 1 1333 601 255 197 74 chr3 98053362 98053650 -61546133 - MLT1E LTR MaLR -20 633 307 1 1333 536 314 81 46 chr3 98053892 98054152 -61545631 - LTR16C LTR ERVL -7 482 214 1 1333 355 115 0 0 chr3 98054178 98054230 -61545553 + B3 SINE B2 1 52 -164 1 1333 211 292 27 14 chr3 98054312 98054385 -61545398 + GA-rich Low_complexity Low_complexity 1 74 0 1 1333 821 185 11 103 chr3 98054550 98054725 -61545058 + B3 SINE B2 47 205 -11 1 1333 250 369 4 34 chr3 98055286 98055519 -61544264 + MuLV-int LTR ERV1 3493 3718 -3888 1 1333 737 50 20 0 chr3 98055963 98056064 -61543719 + (TTTC)n Simple_repeat Simple_repeat 3 105 0 1 1333 1154 52 0 0 chr3 98056064 98056199 -61543584 - B1_Mm SINE Alu -12 135 1 1 1333 248 287 152 24 chr3 98056344 98056469 -61543314 + RMER4B LTR ERVK 346 486 -99 1 1333 5144 124 29 27 chr3 98057029 98057882 -61541901 - RLTR13A LTR ERVK 0 855 1 1 1333 1209 142 22 27 chr3 98058297 98058521 -61541262 + URR1B DNA MER1_type 1 223 -2 1 1333 1797 205 111 67 chr3 98059381 98059950 -61539833 + L1_Rod LINE L1 5047 5640 -207 1 1333 1009 240 102 36 chr3 98060011 98060244 -61539539 + RLTR20B3 LTR ERVK 234 478 -99 1 1333 3855 41 15 15 chr3 98060244 98060719 -61539064 - IAPLTR2_Mm LTR ERVK 0 475 1 1 1333 1009 240 102 36 chr3 98060719 98060788 -61538995 + RLTR20B3 LTR ERVK 479 556 -21 1 1333 528 202 9 18 chr3 98060817 98060928 -61538855 + Lx9 LINE L1 7340 7449 -195 1 1333 516 56 0 0 chr3 98060950 98061022 -61538761 + (TA)n Simple_repeat Simple_repeat 1 72 0 1 1333 678 218 195 0 chr3 98061038 98061178 -61538605 + B3 SINE B2 9 177 -39 1 1333 366 23 0 0 chr3 98061178 98061221 -61538562 + (CATA)n Simple_repeat Simple_repeat 4 46 0 1 1333 678 218 195 0 chr3 98061221 98061254 -61538529 + B3 SINE B2 178 215 -1 1 1333 241 235 111 10 chr3 98061265 98061364 -61538419 + Lx9 LINE L1 7532 7640 -4 1 1333 239 83 67 0 chr3 98061371 98061431 -61538352 + (TA)n Simple_repeat Simple_repeat 1 64 0 1 1333 386 295 156 0 chr3 98063369 98063491 -61536292 + MER63A DNA AcHobo 15 155 -55 1 1333 1018 279 144 26 chr3 98064462 98064956 -61534827 - MLT2B4 LTR ERVL -4 552 1 1 1333 207 242 16 16 chr3 98065117 98065180 -61534603 + CT-rich Low_complexity Low_complexity 4 66 0 1 1333 228 163 0 0 chr3 98065854 98065897 -61533886 + CT-rich Low_complexity Low_complexity 6 48 0 1 1333 324 0 0 0 chr3 98065906 98065942 -61533841 + (TG)n Simple_repeat Simple_repeat 1 36 0 1 1333 352 243 204 18 chr3 98065951 98066064 -61533719 - RSINE1 SINE B4 -29 136 3 1 1333 300 291 181 7 chr3 98066372 98066521 -61533262 - L1M2 LINE L1 -1691 4452 4278 1 1333 3303 53 5 0 chr3 98066736 98067134 -61532649 - MTB LTR MaLR 0 400 1 1 1333 378 252 30 0 chr3 98067168 98067267 -61532516 - B1F SINE Alu -5 144 43 1 1333 642 103 27 44 chr3 98067446 98067629 -61532154 + (TG)n Simple_repeat Simple_repeat 1 180 0 1 1333 378 243 163 48 chr3 98067629 98067776 -61532007 - RSINE1 SINE B4 0 165 2 1 1333 912 225 60 236 chr3 98068011 98068465 -61531318 - ORR1D1 LTR MaLR 0 374 1 1 1333 305 180 62 0 chr3 98069814 98069897 -61529886 - ID_B1 SINE B4 -60 164 81 1 1333 723 235 170 24 chr3 98072314 98072567 -61527216 + B4A SINE B4 3 292 0 1 1333 207 220 33 17 chr3 98072573 98072633 -61527150 + (CA)n Simple_repeat Simple_repeat 1 61 0 1 1333 528 235 214 12 chr3 98072946 98073114 -61526669 - RMER15 LTR ERVL -50 525 324 1 1333 1412 197 250 3 chr3 98073648 98073984 -61525799 - MTD LTR MaLR 0 419 1 1 1333 378 221 45 71 chr3 98074371 98074483 -61525300 - RMER5 LTR ERV1 -48 486 378 1 1333 225 0 0 0 chr3 98074507 98074532 -61525251 + (A)n Simple_repeat Simple_repeat 1 25 0 1 1333 824 233 74 0 chr3 98074532 98074708 -61525075 - B3 SINE B2 -23 193 5 1 1333 391 147 9 38 chr3 98074736 98074842 -61524941 + G-rich Low_complexity Low_complexity 5 107 0 1 1333 257 359 27 27 chr3 98074855 98075001 -61524782 - RMER5 LTR ERV1 -136 398 253 1 1333 236 173 0 37 chr3 98075006 98075060 -61524723 + (TCTCTG)n Simple_repeat Simple_repeat 2 53 0 1 1333 737 221 61 72 chr3 98075094 98075372 -61524411 - B4 SINE B4 -17 275 1 1 1333 353 293 41 35 chr3 98075372 98075517 -61524266 - RMER5 LTR ERV1 -277 257 112 1 1333 1082 104 7 0 chr3 98075558 98075702 -61524081 - B1_Mus1 SINE Alu -1 147 3 1 1333 501 47 0 0 chr3 98075787 98075851 -61523932 + (GA)n Simple_repeat Simple_repeat 2 65 0 1 1333 212 269 0 19 chr3 98075874 98075927 -61523856 + GA-rich Low_complexity Low_complexity 1 52 0 1 1333 245 291 285 0 chr3 98076168 98076319 -61523464 - Lx8 LINE L1 -229 7244 7051 1 1333 203 79 26 0 chr3 98076339 98076377 -61523406 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 1 1333 651 224 137 0 chr3 98076388 98076571 -61523212 - Lx8 LINE L1 -459 7014 6807 1 1333 330 26 0 0 chr3 98076605 98076644 -61523139 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 1 1333 592 144 17 51 chr3 98076941 98077058 -61522725 - B1_Mur3 SINE Alu 0 149 37 1 1333 428 194 20 0 chr3 98077375 98077473 -61522310 + GA-rich Low_complexity Low_complexity 2 101 0 1 1333 227 103 26 0 chr3 98077611 98077650 -61522133 + (GGGAGA)n Simple_repeat Simple_repeat 3 42 0 1 1333 4733 111 100 32 chr3 98078014 98078884 -61520899 - RMER17B LTR ERVK -29 929 1 1 1333 367 293 52 0 chr3 98078900 98079016 -61520767 + L2 LINE L2 1928 2049 -1370 1 1333 1165 247 85 48 chr3 98079308 98079708 -61520075 - RMER5 LTR ERV1 -8 526 112 1 1333 599 236 77 59 chr3 98079919 98080140 -61519643 + MYSERV-int LTR ERVK 5619 5843 -707 1 1333 897 273 31 62 chr3 98080459 98080717 -61519066 + B4A SINE B4 43 292 0 1 1333 2324 185 36 38 chr3 98080807 98081330 -61518453 - RLTR11A LTR ERVK 0 528 7 1 1333 210 296 7 161 chr3 98082138 98082275 -61517508 - B1F2 SINE Alu -33 116 1 1 1333 339 325 79 0 chr3 98082162 98082276 -61517507 - ID_B1 SINE B4 -21 203 81 1 1333 214 318 113 13 chr3 98082517 98082667 -61517116 - L2 LINE L2 -2977 442 278 1 1333 449 289 146 21 chr3 98083196 98083436 -61516347 + B4A SINE B4 5 274 -18 1 1333 322 268 0 24 chr3 98083851 98083935 -61515848 + B1F SINE Alu 17 98 -51 1 1333 1015 99 20 13 chr3 98084702 98084855 -61514928 - URR1A DNA MER1_type 0 226 73 1 1333 198 26 24 49 chr3 98085673 98085714 -61514069 + (TTTG)n Simple_repeat Simple_repeat 1 40 0 1 1333 1119 38 8 0 chr3 98085714 98085846 -61513937 - B1_Mus1 SINE Alu -15 133 1 1 1333 324 330 0 92 chr3 98085850 98085980 -61513803 - ID_B1 SINE B4 -23 201 84 1 1333 296 244 26 201 chr3 98085866 98086020 -61513763 - MT2B LTR ERVL -341 260 134 1 1333 982 151 215 0 chr3 98086143 98086329 -61513454 - URR1A DNA MER1_type 0 226 1 1 1333 596 202 41 16 chr3 98086577 98086698 -61513085 + RSINE1 SINE B4 2 125 -40 1 1333 625 193 0 26 chr3 98088112 98088229 -61511554 + PB1D10 SINE Alu 3 116 -1 1 1333 947 270 84 171 chr3 98088507 98089308 -61510475 - L1MA5 LINE L1 -80 6220 5529 1 1333 524 228 29 157 chr3 98089308 98089480 -61510303 - RSINE1 SINE B4 -14 151 2 1 1333 947 271 70 130 chr3 98089480 98089828 -61509955 - L1MA5 LINE L1 -772 5528 5154 1 1333 813 199 45 0 chr3 98089875 98090031 -61509752 + RSINE1 SINE B4 3 165 0 1 1333 381 43 0 0 chr3 98090152 98090199 -61509584 + (CAAAT)n Simple_repeat Simple_repeat 2 48 0 1 1333 759 286 58 117 chr3 98090213 98090567 -61509216 - L1MA5 LINE L1 -1083 5060 4736 1 1333 388 312 29 7 chr3 98090567 98090706 -61509077 - B1F SINE Alu -5 144 3 1 1333 759 286 58 117 chr3 98090706 98090898 -61508885 - L1MA5 LINE L1 -1408 4735 4546 1 1333 279 0 0 0 chr3 98090898 98090929 -61508854 + (T)n Simple_repeat Simple_repeat 1 31 0 1 1333 243 0 0 0 chr3 98090971 98090998 -61508785 + (TG)n Simple_repeat Simple_repeat 1 27 0 1 1333 566 249 109 14 chr3 98091160 98091445 -61508338 - L1MA5 LINE L1 -2888 3255 2944 1 1333 1042 274 103 21 chr3 98091471 98091938 -61507845 - L1MA5 LINE L1 -3468 2675 2171 1 1333 334 259 45 10 chr3 98093255 98093496 -61506287 + L1MEc LINE L1 2111 2372 -4028 1 1333 2174 159 28 0 chr3 98093579 98093938 -61505845 - ORR1C1 LTR MaLR -8 370 2 1 1333 347 229 41 20 chr3 98093938 98094033 -61505750 + PB1D10 SINE Alu 21 117 0 1 1333 1180 263 70 118 chr3 98094131 98094514 -61505269 - MTE2b LTR MaLR -13 366 2 1 1333 305 233 71 82 chr3 98094606 98094704 -61505079 + L1MEc LINE L1 2576 2672 -3647 1 1333 659 258 195 3 chr3 98095545 98095853 -61503930 - MTEb LTR MaLR -4 375 9 1 1333 844 67 160 0 chr3 98095858 98095977 -61503806 + B1_Mus1 SINE Alu 1 138 -10 1 1333 369 0 0 0 chr3 98095977 98096018 -61503765 + (CAAAA)n Simple_repeat Simple_repeat 2 42 0 1 1333 651 296 26 11 chr3 98096281 98096554 -61503229 + B4A SINE B4 2 278 -14 1 1333 201 74 0 0 chr3 98096635 98096662 -61503121 + (CA)n Simple_repeat Simple_repeat 1 27 0 1 1333 444 240 135 0 chr3 98096708 98096812 -61502971 + RSINE1 SINE B4 2 119 -46 1 1333 1238 286 89 44 chr3 98097223 98097885 -61501898 - L1_Rod LINE L1 -15 5832 5141 1 1333 203 194 0 0 chr3 98098162 98098198 -61501585 + T-rich Low_complexity Low_complexity 1 36 0 1 1333 192 304 85 113 chr3 98098206 98098347 -61501436 + MIRc SINE MIR 11 151 -117 2 1333 403 197 13 0 chr3 98098349 98098425 -61501358 + ID4_ SINE ID 5 81 -2 2 1333 205 310 77 65 chr3 98098468 98098521 -61501262 + MIRb SINE MIR 37 81 -187 2 1333 1136 117 93 42 chr3 98098521 98098736 -61501047 - URR1A DNA MER1_type 0 226 1 2 1333 205 310 77 65 chr3 98098736 98098851 -61500932 + MIRb SINE MIR 82 207 -61 2 1333 1469 83 5 0 chr3 98099013 98099205 -61500578 + B2_Mm1t SINE B2 1 193 0 2 1333 217 214 179 0 chr3 98099260 98099316 -61500467 + PB1 SINE Alu 55 120 -7 2 1333 958 224 24 14 chr3 98099328 98099541 -61500242 + B3 SINE B2 2 216 0 2 1333 756 229 37 31 chr3 98099608 98099770 -61500013 + RSINE1 SINE B4 2 164 -1 2 1333 568 143 91 45 chr3 98100565 98100675 -61499108 + B1_Mur4 SINE Alu 35 149 -1 2 1333 306 132 0 0 chr3 98101620 98101673 -61498110 + (GGATG)n Simple_repeat Simple_repeat 4 56 0 2 1333 21 0 0 0 chr3 98102927 98102948 -61496835 + AT_rich Low_complexity Low_complexity 1 21 0 2 1333 2412 153 125 2 chr3 98103699 98104132 -61495651 - RMER4B LTR ERVK -10 575 90 2 1333 980 225 68 21 chr3 98104133 98104369 -61495414 - Lx8 LINE L1 -292 7181 6935 2 1333 1316 235 93 0 chr3 98104383 98104685 -61495098 + Lx8 LINE L1 6599 6928 -545 2 1333 1145 73 0 0 chr3 98104718 98104855 -61494928 + B1_Mus1 SINE Alu 1 137 -11 2 1333 396 0 0 0 chr3 98104855 98104899 -61494884 + (TAAAA)n Simple_repeat Simple_repeat 2 45 0 2 1333 374 201 25 2 chr3 98105056 98105141 -61494642 + B1F SINE Alu 5 92 -57 2 1333 631 254 141 62 chr3 98105838 98106144 -61493639 + RMER20B LTR ERVK 70 399 -228 2 1333 239 200 0 0 chr3 98106810 98106855 -61492928 - B4A SINE B4 -247 45 1 2 1333 2900 36 0 3 chr3 98107671 98108009 -61491774 - IAPLTR1a_Mm LTR ERVK 0 337 1 2 1333 21324 17 1 2 chr3 98108009 98110370 -61489413 - IAPEz-int LTR ERVK 0 6481 4123 2 1333 951 80 24 0 chr3 98110372 98110497 -61489286 - IAPEz-int LTR ERVK -2770 4910 4783 2 1333 1828 123 4 4 chr3 98110492 98110754 -61489029 - IAPEz-int LTR ERVK -5183 2497 2236 2 1333 460 66 0 32 chr3 98110743 98110806 -61488977 - IAPEz-int LTR ERVK -5062 1419 1359 2 1333 4626 57 71 16 chr3 98110806 98111427 -61488356 - IAPEz-int LTR ERVK -5819 662 8 2 1333 2906 39 0 3 chr3 98111427 98111765 -61488018 - IAPLTR1a_Mm LTR ERVK 0 337 1 2 1333 549 264 72 0 chr3 98112309 98112434 -61487349 + B1F1 SINE Alu 9 142 -7 2 1333 510 17 0 0 chr3 98112434 98112493 -61487290 + (CAAG)n Simple_repeat Simple_repeat 2 60 0 2 1333 551 199 54 81 chr3 98113649 98113797 -61485986 + B1_Mus2 SINE Alu 2 145 -2 2 1333 559 235 26 0 chr3 98114413 98114528 -61485255 + RSINE1 SINE B4 2 119 -46 2 1333 774 31 0 0 chr3 98114769 98114866 -61484917 + (CA)n Simple_repeat Simple_repeat 1 97 0 2 1333 385 363 37 80 chr3 98115248 98115574 -61484209 + RLTR25B LTR ERVK 1 312 -716 2 1333 1021 62 0 0 chr3 98115864 98115992 -61483791 + B2_Mm2 SINE B2 1 128 -67 2 1333 265 298 72 78 chr3 98116505 98116658 -61483125 + RLTR25B LTR ERVK 877 1028 0 2 1333 258 32 0 0 chr3 98118371 98118402 -61481381 + (TC)n Simple_repeat Simple_repeat 2 32 0 2 1333 234 0 0 0 chr3 98118402 98118427 -61481356 + (TG)n Simple_repeat Simple_repeat 1 26 0 2 1333 393 22 0 0 chr3 98118427 98118472 -61481311 + (GA)n Simple_repeat Simple_repeat 1 46 0 2 1333 399 264 54 9 chr3 98118811 98118922 -61480861 + PB1D10 SINE Alu 1 116 -1 2 1333 198 0 0 0 chr3 98118925 98118947 -61480836 + (A)n Simple_repeat Simple_repeat 1 22 0 2 1333 852 132 8 0 chr3 98119825 98119954 -61479829 + B2_Mm1a SINE B2 2 131 -62 2 1333 351 0 0 0 chr3 98119964 98120003 -61479780 + (TAAA)n Simple_repeat Simple_repeat 3 41 0 2 1333 445 208 115 0 chr3 98120859 98120955 -61478828 - PB1D7 SINE Alu -8 112 6 2 1333 292 318 0 9 chr3 98121374 98121485 -61478298 + PB1D9 SINE Alu 3 112 -8 2 1333 200 267 0 0 chr3 98121643 98121688 -61478095 + GA-rich Low_complexity Low_complexity 3 47 0 2 1333 436 189 189 0 chr3 98122816 98122911 -61476872 + PB1D9 SINE Alu 5 117 -3 2 1333 252 0 0 0 chr3 98123183 98123211 -61476572 + (CA)n Simple_repeat Simple_repeat 2 29 0 2 1333 191 243 155 14 chr3 98123940 98124011 -61475772 - MIRb SINE MIR -139 129 49 2 1333 1841 56 0 0 chr3 98125716 98125950 -61473833 - L1Md_F2 LINE L1 -239 6343 6110 2 1333 1709 46 23 0 chr3 98125950 98126168 -61473615 + L1Md_F2 LINE L1 6359 6581 -1 2 1333 396 264 15 90 chr3 98126420 98126553 -61473230 - B1F1 SINE Alu -25 124 2 2 1333 267 104 0 0 chr3 98126865 98126913 -61472870 + (CA)n Simple_repeat Simple_repeat 2 49 0 2 1333 1681 131 63 42 chr3 98127538 98127873 -61471910 + RLTR15 LTR ERVK 1 342 -17 2 1333 384 77 0 0 chr3 98128831 98128883 -61470900 + (TG)n Simple_repeat Simple_repeat 2 53 0 2 1333 349 231 28 28 chr3 98128884 98128991 -61470792 + MTD LTR MaLR 20 126 -295 2 1333 832 28 28 0 chr3 98128958 98129066 -61470717 + B1_Mus1 SINE Alu 38 148 0 2 1333 1167 202 190 7 chr3 98129076 98129360 -61470423 + MTD LTR MaLR 84 419 0 2 1333 327 305 171 45 chr3 98129747 98129850 -61469933 + ID_B1 SINE B4 1 224 0 2 1333 416 255 10 21 chr3 98129850 98129946 -61469837 + PB1D10 SINE Alu 21 115 -2 2 1333 261 296 12 12 chr3 98129951 98130033 -61469750 + ID4 SINE ID 2 83 0 2 1333 534 259 52 52 chr3 98130167 98130322 -61469461 + RSINE1 SINE B4 1 155 -10 2 1333 249 342 42 75 chr3 98130592 98130712 -61469071 + B4A SINE B4 65 180 -112 2 1333 428 270 56 0 chr3 98130634 98130723 -61469060 + PB1D10 SINE Alu 15 108 -9 2 1333 428 282 0 9 chr3 98131439 98131550 -61468233 - PB1D10 SINE Alu -3 114 5 2 1333 528 16 0 0 chr3 98132143 98132204 -61467579 + (CAAGG)n Simple_repeat Simple_repeat 4 64 0 2 1333 870 169 185 0 chr3 98133948 98134137 -61465646 - URR1B DNA MER1_type -1 224 1 2 1333 1269 41 0 0 chr3 98134313 98134460 -61465323 + B1_Mus2 SINE Alu 1 147 0 2 1333 2472 82 31 0 chr3 98134553 98134870 -61464913 + ORR1A2 LTR MaLR 1 327 0 2 1333 10156 127 45 57 chr3 98134870 98136684 -61463099 + ORR1A2-int LTR MaLR 1 1792 0 2 1333 1856 95 125 14 chr3 98136684 98136971 -61462812 + ORR1A2 LTR MaLR 1 319 -8 2 1333 222 143 0 23 chr3 98137656 98137699 -61462084 + (CAAA)n Simple_repeat Simple_repeat 2 43 0 2 1333 285 51 0 0 chr3 98137705 98137744 -61462039 + (A)n Simple_repeat Simple_repeat 1 39 0 2 1333 198 0 0 0 chr3 98137741 98137763 -61462020 + (CAAAC)n Simple_repeat Simple_repeat 2 23 0 2 1333 182 346 24 24 chr3 98139100 98139183 -61460600 + L2c LINE L2 3274 3356 -31 2 1333 189 0 0 0 chr3 98139544 98139565 -61460218 + (CAGGC)n Simple_repeat Simple_repeat 2 22 0 2 1333 264 122 0 0 chr3 98139578 98139619 -61460164 + (A)n Simple_repeat Simple_repeat 1 41 0 2 1333 323 191 0 108 chr3 98140956 98141047 -61458736 - B1_Mus2 SINE Alu -69 79 1 2 1333 325 245 142 11 chr3 98142252 98142344 -61457439 - PB1D7 SINE Alu -3 117 13 2 1333 659 158 0 62 chr3 98142363 98142491 -61457292 - PB1D9 SINE Alu 0 120 1 2 1333 29 70 0 0 chr3 98143039 98143096 -61456687 + GC_rich Low_complexity Low_complexity 1 57 0 2 1333 22 0 0 0 chr3 98143969 98143991 -61455792 + AT_rich Low_complexity Low_complexity 1 22 0 2 1333 411 21 0 0 chr3 98144231 98144279 -61455504 + (CA)n Simple_repeat Simple_repeat 2 49 0 2 1333 216 0 0 0 chr3 98144301 98144325 -61455458 + (TG)n Simple_repeat Simple_repeat 2 25 0 2 1333 275 139 0 0 chr3 98144459 98144502 -61455281 + PB1 SINE Alu 48 90 -37 2 1333 354 45 0 0 chr3 98145086 98145130 -61454653 + (GAA)n Simple_repeat Simple_repeat 2 45 0 2 1333 327 298 122 16 chr3 98145367 98145490 -61454293 + ID_B1 SINE B4 88 223 -1 2 1333 959 80 80 0 chr3 98145832 98145969 -61453814 + B2_Mm1a SINE B2 2 149 -44 2 1333 359 106 0 15 chr3 98145969 98146036 -61453747 + (CATA)n Simple_repeat Simple_repeat 3 68 0 2 1333 632 203 89 0 chr3 98146050 98146173 -61453610 - B1_Mur3 SINE Alu -13 136 3 2 1333 1277 41 0 0 chr3 98146679 98146826 -61452957 + B1_Mm SINE Alu 1 147 0 2 1333 252 0 0 0 chr3 98146826 98146854 -61452929 + (A)n Simple_repeat Simple_repeat 1 28 0 2 1333 252 281 80 66 chr3 98146907 98147044 -61452739 - L2a LINE L2 -239 3187 3049 2 1333 744 113 113 0 chr3 98147122 98147255 -61452528 - URR1A DNA MER1_type 0 226 79 2 1333 969 198 20 15 chr3 98147578 98147778 -61452005 + B3 SINE B2 2 202 -14 2 1333 25 31 0 0 chr3 98147822 98147854 -61451929 + AT_rich Low_complexity Low_complexity 1 32 0 2 1333 468 0 0 0 chr3 98148226 98148278 -61451505 + (GA)n Simple_repeat Simple_repeat 1 52 0 2 1333 304 200 0 18 chr3 98148290 98148402 -61451381 + (TG)n Simple_repeat Simple_repeat 2 111 0 2 1333 219 269 0 0 chr3 98148423 98148564 -61451219 + (TG)n Simple_repeat Simple_repeat 2 142 0 2 1333 407 242 30 78 chr3 98148733 98148899 -61450884 + RLTR9B LTR ERVK 280 437 0 2 1333 585 157 0 0 chr3 98148915 98149049 -61450734 + (TG)n Simple_repeat Simple_repeat 1 134 0 2 1333 1752 160 185 6 chr3 98149087 98149433 -61450350 + MTC LTR MaLR 1 408 -13 2 1333 6467 166 34 28 chr3 98149435 98150684 -61449099 + MTC-int LTR MaLR 2 1258 0 2 1333 2658 153 5 19 chr3 98150686 98151113 -61448670 + MTC LTR MaLR 1 421 0 2 1333 326 213 9 161 chr3 98151115 98151227 -61448556 - MTD LTR MaLR -219 200 106 2 1333 379 258 72 8 chr3 98151229 98151354 -61448429 + MLT1D LTR MaLR 56 188 -317 2 1333 2860 41 18 3 chr3 98151449 98151790 -61447993 - ORR1A0 LTR MaLR 0 346 1 2 1333 494 309 157 21 chr3 98152165 98152446 -61447337 + MLT1D LTR MaLR 186 504 -1 2 1333 528 241 9 13 chr3 98152586 98152710 -61447073 + B1F SINE Alu 1 120 0 2 1333 277 325 48 16 chr3 98152952 98153077 -61446706 + RMER5 LTR ERV1 128 256 -278 2 1333 489 198 0 50 chr3 98153557 98153658 -61446125 + PB1D10 SINE Alu 22 117 0 2 1333 482 252 85 16 chr3 98153700 98153829 -61445954 + ID_B1 SINE B4 80 217 -7 2 1333 1123 249 129 53 chr3 98154047 98154521 -61445262 - Lx8 LINE L1 -199 7274 6765 2 1333 838 258 132 113 chr3 98155038 98155195 -61444588 + MTEa LTR MaLR 1 155 -224 2 1333 472 251 43 64 chr3 98155195 98155382 -61444401 + B3A SINE B2 1 183 -15 2 1333 838 258 132 113 chr3 98155382 98155596 -61444187 + MTEa LTR MaLR 156 379 0 2 1333 400 111 28 0 chr3 98155729 98155801 -61443982 + (TG)n Simple_repeat Simple_repeat 2 75 0 2 1333 221 189 0 19 chr3 98156393 98156447 -61443336 + T-rich Low_complexity Low_complexity 6 58 0 2 1333 660 271 4 114 chr3 98156624 98156870 -61442913 - ID_B1 SINE B4 -1 223 5 3 1333 690 225 31 0 chr3 98156917 98157046 -61442737 - RSINE1 SINE B4 -29 136 4 3 1333 320 111 47 47 chr3 98157070 98157155 -61442628 + CT-rich Low_complexity Low_complexity 3 87 0 3 1333 601 205 126 0 chr3 98157155 98157282 -61442501 - B1_Mur2 SINE Alu -5 144 2 3 1333 431 299 0 25 chr3 98157285 98157405 -61442378 - PB1D7 SINE Alu -3 117 1 3 1333 185 274 139 0 chr3 98157866 98157949 -61441834 - L2a LINE L2 -1 3425 3278 3 1333 25 0 0 0 chr3 98158046 98158071 -61441712 + AT_rich Low_complexity Low_complexity 1 25 0 3 1333 1455 103 4 18 chr3 98158071 98158298 -61441485 - Lx5 LINE L1 -1007 6043 5820 3 1333 5347 161 67 15 chr3 98158300 98158934 -61440849 + Lx4B LINE L1 6074 6764 -294 3 1333 2677 68 59 0 chr3 98158934 98159273 -61440510 + RLTR10D LTR ERVK 1 359 0 3 1333 5347 161 67 15 chr3 98159273 98159574 -61440209 + Lx4B LINE L1 6765 7058 0 3 1333 267 203 17 0 chr3 98159616 98159675 -61440108 - B3 SINE B2 -82 134 75 3 1333 664 293 84 47 chr3 98160033 98160330 -61439453 + MTE-int LTR MaLR 1030 1337 -243 3 1333 461 307 49 49 chr3 98160360 98160504 -61439279 - RSINE1 SINE B4 -2 163 20 3 1333 231 114 0 0 chr3 98160536 98160571 -61439212 + (TCC)n Simple_repeat Simple_repeat 3 37 0 3 1333 499 306 65 0 chr3 98160943 98161142 -61438641 - RMER15-int LTR ERVL -4329 670 459 3 1333 513 179 0 40 chr3 98161397 98161496 -61438287 - ID_B1 SINE B4 -24 200 106 3 1333 434 217 0 152 chr3 98161593 98161636 -61438147 - RSINE1 SINE B4 0 165 127 3 1333 3879 155 64 8 chr3 98161636 98162291 -61437492 - RLTR17 LTR ERVK 0 692 1 3 1333 434 217 0 152 chr3 98162291 98162372 -61437411 - RSINE1 SINE B4 -39 126 60 3 1333 330 200 0 0 chr3 98162386 98162403 -61437380 + polypyrimidine Low_complexity Low_complexity 61 77 0 3 1333 1431 50 0 0 chr3 98162403 98162583 -61437200 + (TTCTCC)n Simple_repeat Simple_repeat 1 180 0 3 1333 330 200 0 0 chr3 98162583 98162640 -61437143 + CT-rich Low_complexity Low_complexity 4 60 0 3 1333 258 32 0 0 chr3 98162642 98162673 -61437110 + (TCTG)n Simple_repeat Simple_repeat 4 34 0 3 1333 528 223 9 26 chr3 98162673 98162788 -61436995 - B1F SINE Alu -32 117 5 3 1333 270 0 0 0 chr3 98163043 98163073 -61436710 + (TG)n Simple_repeat Simple_repeat 2 31 0 3 1333 291 28 0 0 chr3 98163073 98163109 -61436674 + (GA)n Simple_repeat Simple_repeat 1 36 0 3 1333 3306 48 8 0 chr3 98163206 98163599 -61436184 - MTA_Mm LTR MaLR 0 396 1 3 1333 216 105 0 0 chr3 98163704 98163719 -61436064 + (A)n Simple_repeat Simple_repeat 1 15 0 3 1333 1190 75 0 0 chr3 98163719 98163866 -61435917 + B1_Mus2 SINE Alu 1 147 0 3 1333 216 105 0 0 chr3 98163866 98163888 -61435895 + (A)n Simple_repeat Simple_repeat 1 22 0 3 1333 288 0 0 0 chr3 98163934 98163966 -61435817 + (TG)n Simple_repeat Simple_repeat 1 32 0 3 1333 668 245 32 6 chr3 98163977 98164133 -61435650 + RSINE1 SINE B4 2 161 -4 3 1333 227 118 59 0 chr3 98165123 98165157 -61434626 - tRNA-Glu-GAG_ tRNA tRNA -38 37 2 3 1333 443 250 70 42 chr3 98165687 98165807 -61433976 + B1F SINE Alu 31 147 -2 3 1333 458 274 10 0 chr3 98166357 98166459 -61433324 + PB1D10 SINE Alu 9 111 -6 3 1333 335 311 90 0 chr3 98166459 98166479 -61433304 + ID_B1 SINE B4 90 222 -2 3 1333 623 154 8 0 chr3 98166480 98166597 -61433186 + GA-rich Low_complexity Low_complexity 1 118 0 3 1333 464 264 0 9 chr3 98166662 98166773 -61433010 - PB1D10 SINE Alu -7 110 1 3 1333 1099 303 142 31 chr3 98167286 98167991 -61431792 + Lx8 LINE L1 6690 7472 -1 3 1333 544 246 0 34 chr3 98168057 98168175 -61431608 - PB1D9 SINE Alu -1 119 6 3 1333 209 140 0 23 chr3 98168213 98168257 -61431526 + (TTTA)n Simple_repeat Simple_repeat 1 43 0 3 1333 390 345 26 8 chr3 98168401 98168518 -61431265 + MER58A DNA MER1_type 1 119 -105 3 1333 457 282 39 72 chr3 98168631 98168784 -61430999 - MIRb SINE MIR -116 152 2 3 1333 2618 214 137 122 chr3 98169279 98169758 -61430025 - RMER13A LTR ERVK 0 860 383 3 1333 1271 34 0 0 chr3 98169758 98169905 -61429878 - B1_Mm SINE Alu 0 147 1 3 1333 2618 214 137 122 chr3 98169905 98170272 -61429511 - RMER13A LTR ERVK -478 382 1 3 1333 598 213 0 9 chr3 98170479 98170588 -61429195 - B1_Mur1 SINE Alu 0 149 42 3 1333 182 65 0 61 chr3 98170604 98170637 -61429146 + (TCTCTG)n Simple_repeat Simple_repeat 6 36 0 3 1333 220 176 0 0 chr3 98171156 98171195 -61428588 + A-rich Low_complexity Low_complexity 1 39 0 3 1333 186 43 0 0 chr3 98171195 98171218 -61428565 + (GA)n Simple_repeat Simple_repeat 2 24 0 3 1333 220 176 0 0 chr3 98171218 98171229 -61428554 + A-rich Low_complexity Low_complexity 40 50 0 3 1333 702 307 37 14 chr3 98171311 98171526 -61428257 + MER58A DNA MER1_type 3 222 -2 3 1333 1097 66 0 7 chr3 98172111 98172263 -61427520 + (GAAA)n Simple_repeat Simple_repeat 2 152 0 3 1333 324 0 0 0 chr3 98172753 98172789 -61426994 + (CA)n Simple_repeat Simple_repeat 1 36 0 3 1333 579 267 17 0 chr3 98172808 98172928 -61426855 - RSINE1 SINE B4 -41 124 3 3 1334 279 222 69 0 chr3 98173021 98173093 -61426690 + L1MA5 LINE L1 5906 5982 -318 3 1334 1011 171 94 0 chr3 98173095 98173276 -61426507 - URR1A DNA MER1_type 0 226 29 3 1334 342 143 0 38 chr3 98173371 98173451 -61426332 + (TTTA)n Simple_repeat Simple_repeat 2 78 0 3 1334 453 257 9 28 chr3 98173469 98173577 -61426206 - ID_B1 SINE B4 -14 210 105 3 1334 565 265 5 25 chr3 98173664 98173865 -61425918 + L1MA5 LINE L1 6104 6300 0 3 1334 1419 77 17 0 chr3 98174172 98174353 -61425430 + B2_Mm2 SINE B2 2 185 -10 3 1334 251 336 37 9 chr3 98174568 98174676 -61425107 + B1_Mus1 SINE Alu 37 147 -1 3 1334 938 232 0 40 chr3 98174827 98175029 -61424754 + B3A SINE B2 1 194 -4 3 1334 2554 144 130 48 chr3 98175427 98175967 -61423816 - RMER4B LTR ERVK -1 584 1 3 1334 188 372 85 0 chr3 98175968 98176062 -61423721 + L2c LINE L2 3072 3173 -214 3 1334 1300 99 16 6 chr3 98176612 98176795 -61422988 + B2_Mm2 SINE B2 2 186 -9 3 1334 312 315 53 59 chr3 98176933 98177085 -61422698 + L1MC LINE L1 3049 3199 -2947 3 1334 180 0 0 0 chr3 98177085 98177105 -61422678 + (CAAAC)n Simple_repeat Simple_repeat 5 24 0 3 1334 1342 186 0 0 chr3 98177776 98178002 -61421781 - URR1A DNA MER1_type 0 226 1 3 1334 241 213 48 16 chr3 98179351 98179413 -61420370 + ID SINE ID 1 64 -160 3 1334 1177 210 9 5 chr3 98179959 98180174 -61419609 - B3 SINE B2 0 216 1 3 1334 306 0 0 0 chr3 98180210 98180244 -61419539 + (CA)n Simple_repeat Simple_repeat 1 34 0 3 1334 360 0 0 0 chr3 98180244 98180283 -61419500 + (GA)n Simple_repeat Simple_repeat 2 41 0 3 1334 429 240 0 0 chr3 98180295 98180470 -61419313 + (CA)n Simple_repeat Simple_repeat 1 175 0 3 1334 225 0 0 0 chr3 98180470 98180494 -61419289 + (GA)n Simple_repeat Simple_repeat 2 26 0 3 1334 307 229 49 0 chr3 98180665 98180726 -61419057 + ID4_ SINE ID 13 76 -7 3 1334 204 40 0 0 chr3 98180804 98180829 -61418954 + (CAAGG)n Simple_repeat Simple_repeat 2 26 0 3 1334 329 0 24 0 chr3 98181533 98181574 -61418209 + (CAAA)n Simple_repeat Simple_repeat 2 43 0 3 1334 216 0 0 0 chr3 98181722 98181746 -61418037 + (G)n Simple_repeat Simple_repeat 1 24 0 3 1334 325 260 0 40 chr3 98182925 98183025 -61416758 + PB1D10 SINE Alu 1 96 -21 3 1334 25 31 0 0 chr3 98183160 98183192 -61416591 + AT_rich Low_complexity Low_complexity 1 32 0 3 1334 1261 129 10 20 chr3 98183773 98183970 -61415813 + URR1B DNA MER1_type 31 225 0 3 1334 321 295 0 0 chr3 98184966 98185044 -61414739 - PB1D10 SINE Alu -16 101 24 3 1334 854 166 28 0 chr3 98185190 98185335 -61414448 - B1_Mur3 SINE Alu 0 149 1 3 1334 1062 141 123 25 chr3 98185588 98185791 -61413992 - URR1B DNA MER1_type -2 223 1 3 1334 261 0 0 0 chr3 98186045 98186074 -61413709 + (GGGTG)n Simple_repeat Simple_repeat 3 31 0 3 1334 1375 118 0 5 chr3 98188850 98189046 -61410737 + B2_Mm2 SINE B2 1 195 0 3 1334 356 59 0 19 chr3 98189046 98189098 -61410685 + (GAAA)n Simple_repeat Simple_repeat 1 51 0 3 1334 824 242 14 50 chr3 98189327 98189545 -61410238 - ID_B1 SINE B4 -13 211 2 3 1334 1071 87 27 0 chr3 98190135 98190284 -61409499 + B2_Mm2 SINE B2 42 194 -1 3 1334 748 286 56 0 chr3 98190285 98190481 -61409302 + B4 SINE B4 82 288 -4 3 1334 285 298 0 0 chr3 98190519 98190964 -61408819 + (TG)n Simple_repeat Simple_repeat 1 445 0 3 1334 310 238 0 30 chr3 98191016 98191097 -61408686 - MIR SINE MIR -46 162 84 3 1334 23 0 0 0 chr3 98192460 98192483 -61407300 + AT_rich Low_complexity Low_complexity 1 23 0 3 1334 31 26 0 0 chr3 98192737 98192775 -61407008 + AT_rich Low_complexity Low_complexity 1 38 0 3 1334 306 296 176 0 chr3 98192893 98193001 -61406782 - HAL1 LINE L1 -1521 986 860 3 1334 743 219 0 6 chr3 98193056 98193235 -61406548 + T-rich Low_complexity Low_complexity 3 180 0 3 1334 287 154 323 0 chr3 98193315 98193380 -61406403 - L1MC1 LINE L1 -29 6304 6219 3 1334 236 279 71 80 chr3 98193384 98193497 -61406286 - MLT1J LTR MaLR -342 170 59 3 1334 12484 154 70 41 chr3 98193522 98195764 -61404019 - RLTR42-int LTR ERVK -141 5381 3062 3 1334 952 141 214 11 chr3 98195764 98195951 -61403832 + URR1A DNA MER1_type 2 226 0 3 1334 12484 154 70 41 chr3 98195951 98196193 -61403590 - RLTR42-int LTR ERVK -2461 3061 2826 3 1334 1038 212 53 4 chr3 98196198 98196425 -61403358 - RLTR42 LTR ERVK 0 239 2 3 1334 310 321 74 7 chr3 98196425 98196557 -61403226 - B4A SINE B4 -150 142 2 3 1334 393 181 46 37 chr3 98196557 98196666 -61403117 - L1MC LINE L1 -850 5296 5187 4 1334 638 286 87 0 chr3 98196840 98197025 -61402758 + B3 SINE B2 1 201 -15 4 1334 1073 121 0 6 chr3 98197030 98197205 -61402578 + (GGA)n Simple_repeat Simple_repeat 3 176 0 4 1334 648 59 0 0 chr3 98197867 98197952 -61401831 + (TTCC)n Simple_repeat Simple_repeat 3 87 0 4 1334 687 206 49 21 chr3 98198183 98198327 -61401456 + B1_Mur3 SINE Alu 1 148 -1 4 1334 255 273 18 18 chr3 98198662 98198718 -61401065 - ID2 SINE ID -25 58 3 4 1334 236 222 74 0 chr3 98199098 98199152 -61400631 + ID2 SINE ID 3 60 -23 4 1334 294 292 0 0 chr3 98199794 98199866 -61399917 + ID4 SINE ID 1 72 -11 4 1334 41351 14 1 6 chr3 98199957 98206183 -61393600 - L1Md_A LINE L1 0 6582 392 4 1334 1112 198 20 0 chr3 98206209 98206406 -61393377 - B3 SINE B2 -15 201 1 4 1334 296 354 102 0 chr3 98206418 98206565 -61393218 - ERVL-E-int LTR ERVL -4151 1516 1355 4 1334 401 321 84 19 chr3 98206611 98206824 -61392959 + ERVL-E-int LTR ERVL 3597 3823 -1844 4 1334 345 317 84 49 chr3 98207051 98207359 -61392424 + ERVL-E-int LTR ERVL 4163 4481 -1004 4 1334 250 333 12 23 chr3 98207399 98207485 -61392298 - MLT1J-int LTR MaLR -811 576 492 4 1334 635 193 45 39 chr3 98207528 98207553 -61392230 - B2_Mm2 SINE B2 -16 179 153 4 1334 252 0 0 0 chr3 98207553 98207581 -61392202 + (TG)n Simple_repeat Simple_repeat 2 29 0 4 1334 680 193 45 39 chr3 98207581 98207733 -61392050 - B3A SINE B2 -42 156 1 4 1334 223 349 34 122 chr3 98207896 98208043 -61391740 + L2a LINE L2 3291 3424 -2 4 1334 883 235 83 0 chr3 98209994 98210198 -61389585 + ID_B1 SINE B4 4 224 0 4 1334 591 264 209 19 chr3 98210284 98210600 -61389183 + MTEa LTR MaLR 3 378 -1 4 1334 2471 148 2 19 chr3 98211565 98211979 -61387804 + MTB_Mm LTR MaLR 1 407 0 4 1334 244 234 51 25 chr3 98212592 98212671 -61387112 - ID4 SINE ID -1 82 2 4 1334 207 318 116 18 chr3 98212674 98212786 -61386997 + MIRc SINE MIR 128 250 -18 4 1334 688 294 13 25 chr3 98213473 98213630 -61386153 + B3A SINE B2 1 155 -43 4 1334 2159 122 6 0 chr3 98213630 98213949 -61385834 + ORR1A4 LTR MaLR 1 321 -8 4 1334 382 315 53 47 chr3 98214103 98214253 -61385530 - MIRb SINE MIR -39 229 79 4 1334 2641 63 50 0 chr3 98215245 98215607 -61384176 - L1Md_A LINE L1 -6091 633 254 4 1334 281 220 112 64 chr3 98215963 98216129 -61383654 + MIR3 SINE MIR 2 175 -93 4 1334 595 274 35 45 chr3 98216432 98216631 -61383152 + B3A SINE B2 1 197 -1 4 1334 376 253 0 12 chr3 98217400 98217484 -61382299 - Lx8 LINE L1 -589 6884 6802 4 1334 477 245 150 32 chr3 98217498 98217751 -61382032 - L1MC5 LINE L1 -57 7904 7622 4 1334 210 71 0 0 chr3 98218162 98218190 -61381593 + (CTTTG)n Simple_repeat Simple_repeat 2 29 0 4 1334 303 305 110 19 chr3 98218299 98218453 -61381330 - AmnSINE1 SINE SINE -66 509 342 4 1334 418 252 96 7 chr3 98218743 98218879 -61380904 - B1F1 SINE Alu -1 148 1 4 1334 287 319 21 0 chr3 98219046 98219140 -61380643 + MLT2D LTR ERVL 1 96 -460 4 1334 250 159 0 0 chr3 98219142 98219186 -61380597 + RSINE1 SINE B4 2 45 -120 4 1334 258 56 0 0 chr3 98219188 98219224 -61380559 + (TG)n Simple_repeat Simple_repeat 1 36 0 4 1334 365 0 22 0 chr3 98219224 98219268 -61380515 + (GA)n Simple_repeat Simple_repeat 1 46 0 4 1334 732 263 148 41 chr3 98219391 98219681 -61380102 + MLT2D LTR ERVL 94 414 0 4 1334 377 267 67 0 chr3 98219758 98219848 -61379935 - PB1D10 SINE Alu -20 97 2 4 1334 231 253 84 48 chr3 98220287 98220370 -61379413 - ID_B1 SINE B4 -41 183 98 4 1334 269 82 20 0 chr3 98220578 98220627 -61379156 + (TG)n Simple_repeat Simple_repeat 1 50 0 4 1334 1015 83 0 0 chr3 98221708 98221841 -61377942 - B1_Mur4 SINE Alu -15 135 3 4 1334 320 326 172 59 chr3 98222309 98222495 -61377288 + ID_B1 SINE B4 3 209 -15 4 1334 180 0 0 0 chr3 98222504 98222524 -61377259 + (CAA)n Simple_repeat Simple_repeat 3 22 0 4 1334 802 132 0 0 chr3 98222923 98223044 -61376739 - B3 SINE B2 -90 126 6 4 1334 213 362 56 21 chr3 98223639 98223783 -61376000 - MIRb SINE MIR -83 185 37 4 1334 1072 87 0 21 chr3 98224460 98224601 -61375182 + B1_Mus1 SINE Alu 1 138 -10 4 1334 180 0 0 0 chr3 98224601 98224621 -61375162 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 4 1334 348 24 0 0 chr3 98224758 98224799 -61374984 + (TG)n Simple_repeat Simple_repeat 2 42 0 4 1334 4632 30 0 2 chr3 98225324 98225863 -61373920 + L1Md_F2 LINE L1 6042 6579 -3 4 1334 592 265 96 43 chr3 98226709 98226918 -61372865 - ID_B1 SINE B4 -2 222 3 4 1334 879 160 0 0 chr3 98227199 98227355 -61372428 + CT-rich Low_complexity Low_complexity 2 157 0 4 1334 3552 97 2 6 chr3 98227804 98228281 -61371502 - MT2C_Mm LTR ERVL 0 475 1 4 1334 252 0 0 0 chr3 98228313 98228341 -61371442 + (TTTTA)n Simple_repeat Simple_repeat 2 29 0 4 1334 422 281 41 8 chr3 98228638 98228760 -61371023 + B1F SINE Alu 22 147 -2 4 1334 236 154 250 0 chr3 98228767 98228819 -61370964 + ID4_ SINE ID 4 68 -15 4 1334 759 243 47 0 chr3 98229743 98229912 -61369871 + B3A SINE B2 5 181 -17 4 1334 1347 151 0 22 chr3 98230283 98230513 -61369270 + URR1B DNA MER1_type 1 225 0 4 1334 401 192 69 29 chr3 98230521 98230623 -61369160 - RMER30 DNA MER1_type -95 107 2 4 1334 183 162 0 0 chr3 98231211 98231248 -61368535 + GA-rich Low_complexity Low_complexity 3 39 0 4 1334 39 60 0 0 chr3 98231904 98231971 -61367812 + GC_rich Low_complexity Low_complexity 1 67 0 4 1334 183 114 0 0 chr3 98234323 98234358 -61365425 + (T)n Simple_repeat Simple_repeat 1 35 0 4 1334 219 186 23 0 chr3 98234629 98234672 -61365111 + CT-rich Low_complexity Low_complexity 1 44 0 4 1334 619 165 0 41 chr3 98234672 98234810 -61364973 - B1_Mur4 SINE Alu -16 134 1 4 1334 24 0 0 0 chr3 98235592 98235616 -61364167 + AT_rich Low_complexity Low_complexity 1 24 0 4 1334 313 318 74 22 chr3 98235907 98236042 -61363741 + MER58A DNA MER1_type 50 191 -33 4 1334 262 330 0 64 chr3 98236178 98236366 -61363417 + (TATG)n Simple_repeat Simple_repeat 3 178 0 4 1334 240 174 40 68 chr3 98236366 98236440 -61363343 - MTD LTR MaLR 0 419 348 4 1334 294 316 0 63 chr3 98236529 98236718 -61363065 + (TATG)n Simple_repeat Simple_repeat 4 180 0 4 1334 1411 237 61 23 chr3 98236814 98237207 -61362576 - MTD LTR MaLR 0 419 12 4 1334 416 278 191 35 chr3 98237251 98237534 -61362249 - MTD-int LTR MaLR 0 1258 932 4 1334 226 153 39 59 chr3 98238189 98238342 -61361441 + CT-rich Low_complexity Low_complexity 2 151 0 4 1334 330 192 17 51 chr3 98238395 98238571 -61361212 + CT-rich Low_complexity Low_complexity 2 171 0 4 1334 202 176 11 45 chr3 98238803 98238892 -61360891 + CT-rich Low_complexity Low_complexity 5 90 0 4 1334 474 18 0 0 chr3 98238938 98238993 -61360790 + (CA)n Simple_repeat Simple_repeat 1 55 0 4 1334 612 244 69 54 chr3 98239419 98239623 -61360160 - MTE2a LTR MaLR -5 374 168 4 1334 239 287 57 47 chr3 98239672 98239778 -61360005 - MTE2a LTR MaLR -312 107 1 4 1334 763 135 0 21 chr3 98240291 98240435 -61359348 + CT-rich Low_complexity Low_complexity 3 143 0 4 1334 369 174 0 0 chr3 98240437 98240506 -61359277 - B1_Mur4 SINE Alu 0 150 82 4 1334 32485 70 6 2 chr3 98240527 98245657 -61354126 + L1Md_F LINE L1 382 5534 -349 4 1334 382 167 26 204 chr3 98245657 98245709 -61354074 - B1_Mus1 SINE Alu -53 95 61 4 1334 8477 36 1 3 chr3 98245709 98246707 -61353076 + L1Md_F2 LINE L1 5587 6582 0 4 1334 382 167 26 204 chr3 98246707 98246767 -61353016 - B1_Mus1 SINE Alu -88 60 3 4 1334 275 241 0 17 chr3 98246714 98246773 -61353010 - ID_B1 SINE B4 -89 135 78 4 1334 233 282 0 105 chr3 98246773 98246804 -61352979 - MT2B LTR ERVL -385 211 132 4 1334 342 0 0 0 chr3 98246939 98246977 -61352806 + (CTCA)n Simple_repeat Simple_repeat 4 41 0 4 1334 603 0 0 0 chr3 98248267 98248334 -61351449 + (TC)n Simple_repeat Simple_repeat 1 67 0 4 1334 401 248 41 41 chr3 98248529 98248651 -61351132 + B3 SINE B2 81 202 -14 4 1334 627 14 0 0 chr3 98248953 98249025 -61350758 + (GA)n Simple_repeat Simple_repeat 1 72 0 4 1334 23 0 0 0 chr3 98251028 98251051 -61348732 + AT_rich Low_complexity Low_complexity 1 23 0 4 1334 231 36 0 0 chr3 98251052 98251080 -61348703 + (TC)n Simple_repeat Simple_repeat 2 29 0 4 1334 238 282 0 66 chr3 98251087 98251178 -61348605 - BC1_Mm scRNA scRNA -51 101 17 4 1334 803 255 154 46 chr3 98251182 98251552 -61348231 - MTD LTR MaLR 0 419 10 4 1334 2398 57 10 0 chr3 98251620 98251918 -61347865 + L1Md_F2 LINE L1 5286 5586 -297 4 1334 8179 43 4 4 chr3 98251919 98252913 -61346870 + L1Md_F2 LINE L1 5588 6581 -1 4 1334 366 327 19 0 chr3 98253182 98253289 -61346494 - PB1D10 SINE Alu 0 117 9 4 1334 1489 161 132 6 chr3 98255772 98256098 -61343685 - ORR1B1 LTR MaLR 0 394 28 4 1334 1088 204 141 52 chr3 98256692 98257039 -61342744 + MTC LTR MaLR 44 421 0 4 1334 1793 221 58 85 chr3 98257408 98257926 -61341857 + RLTR18B LTR ERVK 5 508 -4 4 1334 27 62 0 0 chr3 98258304 98258352 -61341431 + AT_rich Low_complexity Low_complexity 1 48 0 4 1334 624 186 9 9 chr3 98258374 98258488 -61341295 - B3 SINE B2 -102 114 1 4 1334 1401 239 54 6 chr3 98258974 98259327 -61340456 + ORR1D1 LTR MaLR 5 374 0 4 1334 296 365 140 11 chr3 98260759 98261044 -61338739 - MER21B LTR ERV1 -212 651 330 4 1334 269 308 135 23 chr3 98261050 98261183 -61338600 - MTC LTR MaLR -272 149 2 4 1334 590 263 46 26 chr3 98261418 98261613 -61338170 - RMER30 DNA MER1_type -2 200 2 4 1334 975 173 28 5 chr3 98261666 98261881 -61337902 - L1_Mur3 LINE L1 -1449 4431 4212 4 1334 321 308 25 25 chr3 98261884 98262004 -61337779 + RMER5 LTR ERV1 93 212 -322 4 1334 1358 249 14 6 chr3 98261994 98262341 -61337442 + RMER5 LTR ERV1 167 516 -18 4 1334 329 267 22 0 chr3 98262361 98262451 -61337332 - B3A SINE B2 -104 94 3 5 1334 386 319 81 55 chr3 98262625 98262897 -61336886 + MTE-int LTR MaLR 103 381 -1199 5 1334 238 300 0 0 chr3 98263035 98263102 -61336681 + MTE-int LTR MaLR 778 844 -736 5 1334 2818 190 27 49 chr3 98263102 98263800 -61335983 - RMER6A LTR ERVK 0 756 74 5 1334 517 374 50 48 chr3 98263813 98264068 -61335715 + MTE-int LTR MaLR 795 1048 -532 5 1334 4396 131 18 70 chr3 98264068 98264922 -61334861 + RMER17D2 LTR ERVK 1 809 0 5 1334 517 374 50 48 chr3 98264922 98265045 -61334738 + MTE-int LTR MaLR 1049 1174 -406 5 1334 1350 269 56 22 chr3 98265206 98265669 -61334114 + ETnERV2-int LTR ERVK 1722 2200 -3967 5 1334 4573 102 54 0 chr3 98265684 98266686 -61333097 - L1Md_F LINE L1 -4317 1566 511 5 1334 15014 193 30 25 chr3 98266696 98270166 -61329617 + ETnERV2-int LTR ERVK 2215 6425 -981 5 1334 326 118 82 68 chr3 98270380 98270453 -61329330 + ETnERV2-int LTR ERVK 7331 7404 -2 5 1334 2442 156 20 13 chr3 98270454 98270851 -61328932 + RLTR9D LTR ERVK 1 400 -3 5 1334 584 260 49 65 chr3 98270864 98271049 -61328734 + RMER20B LTR ERVK 422 603 -24 5 1334 333 302 60 20 chr3 98271302 98271552 -61328231 - L1_Mur3 LINE L1 -6896 816 557 5 1334 501 191 0 0 chr3 98271851 98271956 -61327827 + CT-rich Low_complexity Low_complexity 4 108 0 5 1334 1119 117 0 0 chr3 98271956 98272127 -61327656 + (TTCC)n Simple_repeat Simple_repeat 3 173 0 5 1334 262 295 104 10 chr3 98272129 98272225 -61327558 - B1_Mus2 SINE Alu 0 147 43 5 1334 3581 51 9 0 chr3 98273532 98274064 -61325719 - L1Md_F2 LINE L1 0 6582 6130 5 1334 928 243 129 7 chr3 98274950 98275252 -61324531 - MTD LTR MaLR -13 406 68 5 1334 322 297 35 18 chr3 98275262 98275375 -61324408 - PB1D10 SINE Alu 0 117 3 5 1334 1119 238 85 40 chr3 98275746 98276245 -61323538 + BGLII_B LTR ERVK 21 434 -7 5 1334 1391 217 110 3 chr3 98278228 98278584 -61321199 - ORR1B1 LTR MaLR 0 394 1 5 1334 1446 247 8 24 chr3 98279141 98279523 -61320260 + MTC LTR MaLR 45 420 -1 5 1334 479 56 14 0 chr3 98279805 98279876 -61319907 + (GA)n Simple_repeat Simple_repeat 2 73 0 5 1334 1224 237 17 10 chr3 98279962 98280256 -61319527 + RLTR18B LTR ERVK 1 296 -216 5 1334 273 57 0 0 chr3 98280333 98280368 -61319415 + (TTTC)n Simple_repeat Simple_repeat 2 36 0 5 1334 324 70 0 0 chr3 98280467 98280510 -61319273 + (CAT)n Simple_repeat Simple_repeat 3 45 0 5 1334 37125 36 1 13 chr3 98280563 98285792 -61313991 - L1Md_T LINE L1 0 6582 1391 5 1334 8236 132 37 1 chr3 98285791 98287123 -61312660 - L1_Mm LINE L1 -1015 4868 3489 5 1334 962 131 0 18 chr3 98287121 98287284 -61312499 - MusHAL1 LINE L1 -802 1910 1751 5 1334 1232 81 6 0 chr3 98287296 98287470 -61312313 + (TTTC)n Simple_repeat Simple_repeat 4 178 0 5 1334 621 100 33 6 chr3 98287543 98287663 -61312120 - L1_Mus1 LINE L1 0 6584 6459 5 1334 6270 66 3 2 chr3 98287682 98288794 -61310989 - L1_Mus1 LINE L1 -205 6362 5250 5 1334 231 36 0 0 chr3 98289031 98289059 -61310724 + (TCTA)n Simple_repeat Simple_repeat 3 30 0 5 1334 980 116 7 0 chr3 98289113 98289260 -61310523 - B1_Mus1 SINE Alu 0 148 1 5 1334 3071 32 0 0 chr3 98289490 98289836 -61309947 + ORR1A0 LTR MaLR 1 346 0 5 1334 14555 51 1 1 chr3 98289836 98291628 -61308155 + ORR1A0-int LTR MaLR 1 1792 0 5 1334 3096 26 0 0 chr3 98291628 98291974 -61307809 + ORR1A0 LTR MaLR 1 346 0 5 1334 14555 51 1 1 chr3 98291974 98293766 -61306017 + ORR1A0-int LTR MaLR 1 1792 0 5 1334 3096 26 0 0 chr3 98293766 98294112 -61305671 + ORR1A0 LTR MaLR 1 346 0 5 1334 14570 50 1 1 chr3 98294112 98295904 -61303879 + ORR1A0-int LTR MaLR 1 1792 0 5 1334 3060 29 0 0 chr3 98295904 98296250 -61303533 + ORR1A0 LTR MaLR 1 346 0 5 1334 294 316 0 63 chr3 98296579 98296768 -61303015 + (TATG)n Simple_repeat Simple_repeat 4 180 0 5 1334 1455 229 51 39 chr3 98296909 98297306 -61302477 - MTD LTR MaLR 0 419 13 5 1334 213 65 0 0 chr3 98297306 98297337 -61302446 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 5 1334 1455 229 51 39 chr3 98297337 98297353 -61302430 - MTD LTR MaLR -407 12 1 5 1334 369 262 265 19 chr3 98297353 98297542 -61302241 - MTD-int LTR MaLR 0 1258 1010 5 1334 249 57 0 0 chr3 98297542 98297577 -61302206 + (CAA)n Simple_repeat Simple_repeat 2 36 0 5 1334 369 262 265 19 chr3 98297577 98297644 -61302139 - MTD-int LTR MaLR -249 1009 940 5 1334 254 164 10 106 chr3 98298331 98298529 -61301254 + CT-rich Low_complexity Low_complexity 2 180 0 5 1334 857 106 0 30 chr3 98298566 98298732 -61301051 + (TCCC)n Simple_repeat Simple_repeat 2 162 0 5 1334 212 185 24 47 chr3 98298786 98298871 -61300912 + CT-rich Low_complexity Low_complexity 2 84 0 5 1334 429 20 0 0 chr3 98298918 98298968 -61300815 + (CA)n Simple_repeat Simple_repeat 2 51 0 5 1334 527 271 45 47 chr3 98299393 98299617 -61300166 - MTE2a LTR MaLR -14 405 195 5 1334 420 20 0 0 chr3 98299991 98300040 -61299743 + (TCC)n Simple_repeat Simple_repeat 2 50 0 5 1334 699 173 58 29 chr3 98300040 98300177 -61299606 - B1_Mus1 SINE Alu -5 143 3 5 1334 420 20 0 0 chr3 98300350 98300399 -61299384 + (CTCA)n Simple_repeat Simple_repeat 1 49 0 5 1334 435 19 0 0 chr3 98301676 98301728 -61298055 + (TC)n Simple_repeat Simple_repeat 2 53 0 5 1334 410 254 33 33 chr3 98301911 98302033 -61297750 + B3 SINE B2 81 202 -14 5 1334 723 62 0 0 chr3 98302335 98302432 -61297351 + (GA)n Simple_repeat Simple_repeat 1 97 0 5 1335 267 31 0 0 chr3 98304445 98304477 -61295306 + (TC)n Simple_repeat Simple_repeat 2 33 0 5 1335 245 275 22 0 chr3 98304484 98304575 -61295208 - BC1_Mm scRNA scRNA -43 109 17 5 1335 808 255 154 46 chr3 98304579 98304949 -61294834 - MTD LTR MaLR 0 419 10 5 1335 2461 47 10 0 chr3 98305017 98305315 -61294468 + L1Md_F2 LINE L1 5286 5586 -297 5 1335 7792 48 26 4 chr3 98305315 98306289 -61293494 + L1Md_F2 LINE L1 5587 6581 -1 5 1335 357 327 19 0 chr3 98306558 98306665 -61293118 - PB1D10 SINE Alu 0 117 9 5 1335 1506 161 132 6 chr3 98309147 98309473 -61290310 - ORR1B1 LTR MaLR 0 394 28 5 1335 1088 204 141 52 chr3 98310132 98310479 -61289304 + MTC LTR MaLR 44 421 0 5 1335 1783 229 56 83 chr3 98310848 98311366 -61288417 + RLTR18B LTR ERVK 5 508 -4 5 1335 32 26 0 0 chr3 98311743 98311782 -61288001 + AT_rich Low_complexity Low_complexity 1 39 0 5 1335 528 221 9 9 chr3 98311814 98311928 -61287855 - B3 SINE B2 -102 114 1 5 1335 1401 239 54 6 chr3 98312414 98312767 -61287016 + ORR1D1 LTR MaLR 5 374 0 5 1335 314 362 140 14 chr3 98314199 98314485 -61285298 - MER21B LTR ERV1 -212 651 330 5 1335 282 300 135 23 chr3 98314491 98314624 -61285159 - MTC LTR MaLR -272 149 2 5 1335 574 268 46 26 chr3 98314859 98315054 -61284729 - RMER30 DNA MER1_type -2 200 2 5 1335 997 168 28 5 chr3 98315107 98315322 -61284461 - L1_Mur3 LINE L1 -1449 4431 4212 5 1335 330 299 25 25 chr3 98315325 98315445 -61284338 + RMER5 LTR ERV1 93 212 -322 5 1335 1358 249 14 6 chr3 98315435 98315782 -61284001 + RMER5 LTR ERV1 167 516 -18 5 1335 330 267 22 0 chr3 98315802 98315892 -61283891 - B3A SINE B2 -104 94 3 5 1335 399 319 81 55 chr3 98316066 98316338 -61283445 + MTE-int LTR MaLR 103 381 -1199 5 1335 238 300 0 0 chr3 98316476 98316543 -61283240 + MTE-int LTR MaLR 778 844 -736 5 1335 2856 197 26 45 chr3 98316543 98317239 -61282544 - RMER6A LTR ERVK 0 756 74 5 1335 517 374 50 48 chr3 98317252 98317507 -61282276 + MTE-int LTR MaLR 795 1048 -532 5 1335 4396 131 18 70 chr3 98317507 98318361 -61281422 + RMER17D2 LTR ERVK 1 809 0 5 1335 517 374 50 48 chr3 98318361 98318484 -61281299 + MTE-int LTR MaLR 1049 1174 -406 5 1335 1325 274 56 22 chr3 98318645 98319108 -61280675 + ETnERV2-int LTR ERVK 1722 2200 -3967 5 1335 4573 102 54 0 chr3 98319123 98320125 -61279658 - L1Md_F LINE L1 -4317 1566 511 5 1335 15014 193 30 25 chr3 98320135 98323607 -61276176 + ETnERV2-int LTR ERVK 2215 6425 -981 5 1335 326 118 82 68 chr3 98323821 98323894 -61275889 + ETnERV2-int LTR ERVK 7331 7404 -2 5 1335 2442 156 20 13 chr3 98323895 98324292 -61275491 + RLTR9D LTR ERVK 1 400 -3 5 1335 584 260 49 65 chr3 98324305 98324490 -61275293 + RMER20B LTR ERVK 422 603 -24 5 1335 333 302 60 20 chr3 98324743 98324993 -61274790 - L1_Mur3 LINE L1 -6896 816 557 5 1335 510 189 0 0 chr3 98325292 98325398 -61274385 + CT-rich Low_complexity Low_complexity 3 108 0 5 1335 1158 122 0 0 chr3 98325398 98325578 -61274205 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 5 1335 262 295 104 10 chr3 98325586 98325682 -61274101 - B1_Mus2 SINE Alu 0 147 43 5 1335 3536 42 9 0 chr3 98326989 98327541 -61272242 - L1Md_F2 LINE L1 0 6582 6130 5 1335 928 243 129 7 chr3 98328427 98328729 -61271054 - MTD LTR MaLR -13 406 68 5 1335 322 297 35 18 chr3 98328739 98328852 -61270931 - PB1D10 SINE Alu 0 117 3 5 1335 1119 238 85 40 chr3 98329223 98329722 -61270061 + BGLII_B LTR ERVK 21 434 -7 5 1335 1391 217 110 3 chr3 98331705 98332061 -61267722 - ORR1B1 LTR MaLR 0 394 1 5 1335 1446 247 8 24 chr3 98332618 98333000 -61266783 + MTC LTR MaLR 45 420 -1 5 1335 479 56 14 0 chr3 98333282 98333353 -61266430 + (GA)n Simple_repeat Simple_repeat 2 73 0 5 1335 1224 237 17 10 chr3 98333439 98333733 -61266050 + RLTR18B LTR ERVK 1 296 -216 5 1335 237 65 0 0 chr3 98333810 98333841 -61265942 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 5 1335 324 70 0 0 chr3 98333940 98333983 -61265800 + (CAT)n Simple_repeat Simple_repeat 3 45 0 5 1335 37125 36 1 13 chr3 98334036 98339265 -61260518 - L1Md_T LINE L1 0 6582 1391 5 1335 8236 132 37 1 chr3 98339264 98340596 -61259187 - L1_Mm LINE L1 -1015 4868 3489 5 1335 962 131 0 18 chr3 98340594 98340757 -61259026 - MusHAL1 LINE L1 -802 1910 1751 5 1335 1136 98 6 0 chr3 98340758 98340931 -61258852 + (TTTC)n Simple_repeat Simple_repeat 4 177 0 5 1335 621 100 33 6 chr3 98341004 98341124 -61258659 - L1_Mus1 LINE L1 0 6584 6459 5 1335 6270 66 3 2 chr3 98341143 98342255 -61257528 - L1_Mus1 LINE L1 -205 6362 5250 5 1335 231 36 0 0 chr3 98342492 98342520 -61257263 + (TCTA)n Simple_repeat Simple_repeat 3 30 0 5 1335 980 116 7 0 chr3 98342574 98342721 -61257062 - B1_Mus1 SINE Alu 0 148 1 5 1335 3071 32 0 0 chr3 98342951 98343297 -61256486 + ORR1A0 LTR MaLR 1 346 0 5 1335 14555 51 1 1 chr3 98343297 98345089 -61254694 + ORR1A0-int LTR MaLR 1 1792 0 5 1335 3096 26 0 0 chr3 98345089 98345435 -61254348 + ORR1A0 LTR MaLR 1 346 0 5 1335 14555 51 1 1 chr3 98345435 98347227 -61252556 + ORR1A0-int LTR MaLR 1 1792 0 5 1335 3096 26 0 0 chr3 98347227 98347573 -61252210 + ORR1A0 LTR MaLR 1 346 0 5 1335 14570 50 1 1 chr3 98347573 98349365 -61250418 + ORR1A0-int LTR MaLR 1 1792 0 5 1335 3060 29 0 0 chr3 98349365 98349711 -61250072 + ORR1A0 LTR MaLR 1 346 0 5 1335 294 316 0 63 chr3 98350040 98350229 -61249554 + (TATG)n Simple_repeat Simple_repeat 4 180 0 5 1335 1455 229 51 39 chr3 98350370 98350767 -61249016 - MTD LTR MaLR 0 419 13 5 1335 213 65 0 0 chr3 98350767 98350798 -61248985 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 5 1335 1455 229 51 39 chr3 98350798 98350814 -61248969 - MTD LTR MaLR -407 12 1 5 1335 369 262 265 19 chr3 98350814 98351003 -61248780 - MTD-int LTR MaLR 0 1258 1010 5 1335 249 57 0 0 chr3 98351003 98351038 -61248745 + (CAA)n Simple_repeat Simple_repeat 2 36 0 5 1335 369 262 265 19 chr3 98351038 98351105 -61248678 - MTD-int LTR MaLR -249 1009 940 5 1335 254 164 10 106 chr3 98351792 98351990 -61247793 + CT-rich Low_complexity Low_complexity 2 180 0 5 1335 857 106 0 30 chr3 98352027 98352193 -61247590 + (TCCC)n Simple_repeat Simple_repeat 2 162 0 5 1335 212 185 24 47 chr3 98352247 98352332 -61247451 + CT-rich Low_complexity Low_complexity 2 84 0 5 1335 465 19 0 0 chr3 98352379 98352433 -61247350 + (CA)n Simple_repeat Simple_repeat 2 55 0 5 1335 527 271 45 47 chr3 98352858 98353082 -61246701 - MTE2a LTR MaLR -14 405 195 5 1335 420 20 0 0 chr3 98353456 98353505 -61246278 + (TCC)n Simple_repeat Simple_repeat 2 50 0 5 1335 699 173 58 29 chr3 98353505 98353642 -61246141 - B1_Mus1 SINE Alu -5 143 3 5 1335 456 19 0 0 chr3 98353815 98353868 -61245915 + (CTCA)n Simple_repeat Simple_repeat 1 53 0 6 1335 435 19 0 0 chr3 98355145 98355197 -61244586 + (TC)n Simple_repeat Simple_repeat 2 53 0 6 1335 410 254 33 33 chr3 98355380 98355502 -61244281 + B3 SINE B2 81 202 -14 6 1335 741 61 0 0 chr3 98355804 98355903 -61243880 + (GA)n Simple_repeat Simple_repeat 1 99 0 6 1335 267 31 0 0 chr3 98357916 98357948 -61241835 + (TC)n Simple_repeat Simple_repeat 2 33 0 6 1335 245 275 22 0 chr3 98357955 98358046 -61241737 - BC1_Mm scRNA scRNA -43 109 17 6 1335 808 255 154 46 chr3 98358050 98358420 -61241363 - MTD LTR MaLR 0 419 10 6 1335 2461 47 10 0 chr3 98358488 98358786 -61240997 + L1Md_F2 LINE L1 5286 5586 -297 6 1335 7792 48 26 4 chr3 98358786 98359760 -61240023 + L1Md_F2 LINE L1 5587 6581 -1 6 1335 357 327 19 0 chr3 98360029 98360136 -61239647 - PB1D10 SINE Alu 0 117 9 6 1335 1506 161 132 6 chr3 98362618 98362944 -61236839 - ORR1B1 LTR MaLR 0 394 28 6 1335 1088 204 141 52 chr3 98363603 98363950 -61235833 + MTC LTR MaLR 44 421 0 6 1335 1783 229 56 83 chr3 98364319 98364837 -61234946 + RLTR18B LTR ERVK 5 508 -4 6 1335 32 26 0 0 chr3 98365214 98365253 -61234530 + AT_rich Low_complexity Low_complexity 1 39 0 6 1335 528 221 9 9 chr3 98365285 98365399 -61234384 - B3 SINE B2 -102 114 1 6 1335 1401 239 54 6 chr3 98365885 98366238 -61233545 + ORR1D1 LTR MaLR 5 374 0 6 1335 314 362 140 14 chr3 98367670 98367956 -61231827 - MER21B LTR ERV1 -212 651 330 6 1335 282 300 135 23 chr3 98367962 98368095 -61231688 - MTC LTR MaLR -272 149 2 6 1335 549 274 46 26 chr3 98368330 98368525 -61231258 - RMER30 DNA MER1_type -2 200 2 6 1335 997 168 28 5 chr3 98368578 98368793 -61230990 - L1_Mur3 LINE L1 -1449 4431 4212 6 1335 330 299 25 25 chr3 98368796 98368916 -61230867 + RMER5 LTR ERV1 93 212 -322 6 1335 1358 249 14 6 chr3 98368906 98369253 -61230530 + RMER5 LTR ERV1 167 516 -18 6 1335 330 267 22 0 chr3 98369273 98369363 -61230420 - B3A SINE B2 -104 94 3 6 1335 399 319 81 55 chr3 98369537 98369809 -61229974 + MTE-int LTR MaLR 103 381 -1199 6 1335 238 300 0 0 chr3 98369947 98370014 -61229769 + MTE-int LTR MaLR 778 844 -736 6 1335 2856 197 26 45 chr3 98370014 98370710 -61229073 - RMER6A LTR ERVK 0 756 74 6 1335 536 391 31 39 chr3 98370723 98370982 -61228801 + MTE-int LTR MaLR 795 1054 -526 6 1335 4418 139 13 55 chr3 98370982 98371826 -61227957 + RMER17D2 LTR ERVK 1 809 0 6 1335 536 391 31 39 chr3 98371826 98371949 -61227834 + MTE-int LTR MaLR 1055 1173 -407 6 1335 1300 276 56 22 chr3 98372110 98372573 -61227210 + ETnERV2-int LTR ERVK 1722 2200 -3967 6 1335 4573 102 54 0 chr3 98372588 98373590 -61226193 - L1Md_F LINE L1 -4317 1566 511 6 1335 15014 193 30 25 chr3 98373600 98377070 -61222713 + ETnERV2-int LTR ERVK 2215 6425 -981 6 1335 326 118 82 68 chr3 98377284 98377357 -61222426 + ETnERV2-int LTR ERVK 7331 7404 -2 6 1335 2442 156 20 13 chr3 98377358 98377755 -61222028 + RLTR9D LTR ERVK 1 400 -3 6 1335 584 260 49 65 chr3 98377768 98377953 -61221830 + RMER20B LTR ERVK 422 603 -24 6 1335 333 302 60 20 chr3 98378206 98378456 -61221327 - L1_Mur3 LINE L1 -6896 816 557 6 1335 348 189 0 0 chr3 98378755 98378829 -61220954 + CT-rich Low_complexity Low_complexity 3 76 0 6 1335 984 148 0 0 chr3 98378833 98379002 -61220781 + (TTTC)n Simple_repeat Simple_repeat 2 170 0 6 1335 242 289 119 12 chr3 98379003 98379087 -61220696 - B1_Mus2 SINE Alu -12 135 43 6 1335 21 0 0 0 chr3 98379723 98379744 -61220039 + AT_rich Low_complexity Low_complexity 1 21 0 6 1335 689 239 0 0 chr3 98379901 98380043 -61219740 + B1_Mur4 SINE Alu 1 142 -8 6 1335 591 40 0 0 chr3 98380045 98380119 -61219664 + (CAAG)n Simple_repeat Simple_repeat 2 75 0 6 1335 1229 26 19 0 chr3 98380592 98380747 -61219036 + (GGGAGA)n Simple_repeat Simple_repeat 6 163 0 6 1335 5460 103 11 2 chr3 98381386 98382177 -61217606 - L1_Mus3 LINE L1 0 6638 5841 6 1335 4631 141 7 6 chr3 98382178 98382908 -61216875 + L1_Mus3 LINE L1 5106 5836 -47 6 1335 28 0 0 0 chr3 98383173 98383201 -61216582 + AT_rich Low_complexity Low_complexity 1 28 0 6 1335 205 175 0 0 chr3 98383338 98383378 -61216405 + A-rich Low_complexity Low_complexity 2 41 0 6 1335 302 184 0 13 chr3 98383696 98383773 -61216010 + CT-rich Low_complexity Low_complexity 2 77 0 6 1335 928 243 129 7 chr3 98386072 98386374 -61213409 - MTD LTR MaLR -13 406 68 6 1335 322 297 35 18 chr3 98386384 98386497 -61213286 - PB1D10 SINE Alu 0 117 3 6 1335 1126 235 85 40 chr3 98386868 98387367 -61212416 + BGLII_B LTR ERVK 21 434 -7 6 1335 1566 209 110 3 chr3 98389360 98389716 -61210067 - ORR1B1 LTR MaLR 0 394 1 6 1335 1603 247 0 23 chr3 98390271 98390656 -61209127 + MTC LTR MaLR 45 420 -1 6 1335 554 39 13 0 chr3 98390936 98391013 -61208770 + (GA)n Simple_repeat Simple_repeat 2 79 0 6 1335 1373 220 17 14 chr3 98391099 98391394 -61208389 + RLTR18B LTR ERVK 1 296 -216 6 1335 297 359 164 54 chr3 98392371 98392798 -61206985 - MER21B LTR ERV1 -60 803 330 6 1335 353 303 127 15 chr3 98392804 98392938 -61206845 - MTC LTR MaLR -272 149 1 6 1335 577 291 51 31 chr3 98393160 98393355 -61206428 - RMER30 DNA MER1_type -2 200 2 6 1335 7014 223 46 28 chr3 98393714 98396948 -61202835 - Lx7 LINE L1 -201 7495 4222 6 1335 351 204 72 27 chr3 98396950 98397061 -61202722 + RMER5 LTR ERV1 81 196 -338 6 1335 1406 257 12 6 chr3 98397073 98397418 -61202365 + RMER5 LTR ERV1 170 516 -18 6 1335 245 299 34 22 chr3 98397438 98397527 -61202256 - B3 SINE B2 -124 92 3 6 1335 268 289 86 91 chr3 98397701 98397876 -61201907 + MTE-int LTR MaLR 103 276 -1304 6 1335 2709 40 0 0 chr3 98397915 98398238 -61201545 + IAPEY2_LTR LTR ERVK 32 354 -3 6 1335 9713 122 12 21 chr3 98398243 98399872 -61199911 + IAPEY3-int LTR ERVK 1 1982 -5698 6 1335 3646 67 9 0 chr3 98399849 98400300 -61199483 + IAPEY3-int LTR ERVK 2238 2692 -4988 6 1335 494 51 0 0 chr3 98400290 98400349 -61199434 + IAPEY3-int LTR ERVK 4852 4910 -2770 6 1335 3366 77 56 0 chr3 98400349 98401082 -61198701 + IAPEY3-int LTR ERVK 6907 7680 0 6 1335 2707 46 0 0 chr3 98401092 98401418 -61198365 + IAPEY2_LTR LTR ERVK 32 357 0 6 1335 3047 187 36 46 chr3 98401692 98402382 -61197401 - RMER6A LTR ERVK 0 756 74 6 1335 694 390 34 21 chr3 98402388 98402773 -61197010 + MTE-int LTR MaLR 787 1176 -404 6 1335 237 227 89 51 chr3 98403570 98403649 -61196134 + LTRIS4 LTR ERV1 376 457 -50 6 1335 390 21 0 0 chr3 98403751 98403798 -61195985 + (TCTG)n Simple_repeat Simple_repeat 4 50 0 6 1335 480 56 0 27 chr3 98404151 98404224 -61195559 + MMVL30-int LTR ERV1 772 842 -2856 6 1335 349 327 21 80 chr3 98404300 98404539 -61195244 + MMVL30-int LTR ERV1 844 1068 -2630 6 1335 583 100 0 48 chr3 98405453 98405558 -61194225 - L1Md_F2 LINE L1 -12 6570 6471 6 1335 7215 83 22 10 chr3 98405560 98406533 -61193250 - L1Md_F2 LINE L1 -12 6570 5587 6 1335 10755 72 3 1 chr3 98406551 98407990 -61191793 - L1_Mm LINE L1 -3050 2833 1391 6 1335 8419 128 37 1 chr3 98407989 98409321 -61190462 - L1_Mm LINE L1 -1015 4868 3489 6 1335 920 156 0 6 chr3 98409319 98409480 -61190303 - L1VL1 LINE L1 -802 2896 2737 6 1335 1155 101 0 0 chr3 98409505 98409714 -61190069 + (TTTC)n Simple_repeat Simple_repeat 1 209 0 6 1335 7728 85 11 3 chr3 98409809 98411515 -61188268 - L1_Mus1 LINE L1 -21 6561 4774 6 1335 10392 149 58 27 chr3 98411496 98413942 -61185841 - L1VL1 LINE L1 -1020 2678 2 6 1335 375 23 0 0 chr3 98414441 98414485 -61185298 + (TCTA)n Simple_repeat Simple_repeat 3 46 0 6 1335 1021 122 7 0 chr3 98414539 98414686 -61185097 - B1_Mus1 SINE Alu 0 148 1 6 1335 3204 32 0 0 chr3 98414916 98415262 -61184521 + ORR1A0 LTR MaLR 1 346 0 6 1335 367 304 70 35 chr3 98415272 98415415 -61184368 + MER58A DNA MER1_type 44 191 -33 6 1335 388 279 5 69 chr3 98415551 98415740 -61184043 + (TATG)n Simple_repeat Simple_repeat 4 180 0 6 1335 264 328 0 63 chr3 98415756 98415945 -61183838 + (TATG)n Simple_repeat Simple_repeat 4 180 0 6 1335 210 327 0 19 chr3 98416024 98416130 -61183653 + (TATG)n Simple_repeat Simple_repeat 4 107 0 6 1335 1509 235 64 32 chr3 98416312 98416702 -61183081 - MTC LTR MaLR 0 421 18 6 1335 423 0 0 0 chr3 98416702 98416749 -61183034 + (CAA)n Simple_repeat Simple_repeat 2 48 0 6 1335 1509 235 64 32 chr3 98416749 98416766 -61183017 - MTC LTR MaLR -404 17 2 6 1335 376 277 66 50 chr3 98416858 98417040 -61182743 - MTC-int LTR MaLR -142 1116 932 6 1335 306 274 55 110 chr3 98417734 98417898 -61181885 - HAL1-3A_ME LINE L1 -421 2437 2283 6 1335 371 137 8 64 chr3 98417900 98418025 -61181758 + CT-rich Low_complexity Low_complexity 2 119 0 6 1335 313 311 28 89 chr3 98418174 98418354 -61181429 - HAL1-3A_ME LINE L1 -409 2449 2281 6 1335 465 50 0 0 chr3 98418396 98418456 -61181327 + (CA)n Simple_repeat Simple_repeat 2 61 0 6 1335 614 266 46 68 chr3 98418881 98419127 -61180656 - MTE2a LTR MaLR -2 417 174 6 1335 718 191 57 29 chr3 98419492 98419632 -61180151 - B1_Mus1 SINE Alu -2 146 3 6 1335 456 19 0 0 chr3 98419808 98419861 -61179922 + (CTCA)n Simple_repeat Simple_repeat 1 53 0 6 1335 780 11 0 0 chr3 98421150 98421239 -61178544 + (TC)n Simple_repeat Simple_repeat 1 89 0 6 1335 510 268 24 31 chr3 98421446 98421573 -61178210 + B3 SINE B2 81 206 -10 6 1335 188 226 16 0 chr3 98421575 98421637 -61178146 + (TAGA)n Simple_repeat Simple_repeat 2 64 0 6 1335 747 52 0 0 chr3 98421871 98421967 -61177816 + (GA)n Simple_repeat Simple_repeat 2 97 0 6 1335 265 290 14 19 chr3 98424021 98424108 -61175675 - ID4_ SINE ID -51 101 17 6 1335 582 272 177 9 chr3 98424112 98424468 -61175315 - MTD LTR MaLR 0 421 7 6 1335 413 336 0 0 chr3 98424810 98424920 -61174863 - PB1D10 SINE Alu -5 112 3 6 1335 279 357 20 0 chr3 98424832 98424930 -61174853 - ID_B1 SINE B4 -53 171 72 6 1335 1441 196 130 6 chr3 98427414 98427739 -61172044 - ORR1B1 LTR MaLR -2 417 28 6 1335 188 299 38 38 chr3 98428110 98428190 -61171593 + MIR SINE MIR 41 120 -142 6 1335 1200 207 141 52 chr3 98428314 98428661 -61171122 + MTC LTR MaLR 44 421 0 6 1335 976 157 3 15 chr3 98428676 98429012 -61170771 + CT-rich Low_complexity Low_complexity 1 332 0 6 1335 1369 233 22 10 chr3 98429344 98429656 -61170127 + RLTR18B LTR ERVK 1 316 -196 6 1335 712 254 32 16 chr3 98429678 98429866 -61169917 + RLTR18B LTR ERVK 297 487 -25 6 1335 3023 96 2 20 chr3 98430038 98430441 -61169342 - MTA_Mm LTR MaLR 0 396 1 6 1335 942 85 140 11 chr3 98430441 98430620 -61169163 - MTA_Mm-int LTR MaLR 0 1098 897 6 1335 5001 93 15 1 chr3 98430611 98431324 -61168459 - MTA_Mm-int LTR MaLR -375 723 1 6 1335 2935 94 2 27 chr3 98431324 98431730 -61168053 - MTA_Mm LTR MaLR 0 396 1 6 1335 34 24 0 0 chr3 98431971 98432012 -61167771 + AT_rich Low_complexity Low_complexity 1 41 0 6 1335 622 204 9 0 chr3 98432044 98432157 -61167626 - B3 SINE B2 -102 114 1 6 1335 1573 242 54 6 chr3 98432637 98432990 -61166793 + ORR1D1 LTR MaLR 5 374 0 6 1335 189 0 0 0 chr3 98433331 98433352 -61166431 + (CAA)n Simple_repeat Simple_repeat 3 23 0 6 1335 413 355 178 22 chr3 98434349 98434715 -61165068 - MER21B LTR ERV1 -111 752 330 6 166 670 278 37 16 chr3 98435026 98435216 -61164567 - RMER30 DNA MER1_type -7 195 2 7 1336 6741 246 43 51 chr3 98435558 98436917 -61162866 - Lx7 LINE L1 -201 7495 6187 7 1336 411 21 0 0 chr3 98436917 98436965 -61162818 + (CA)n Simple_repeat Simple_repeat 1 48 0 7 1336 6741 225 64 28 chr3 98436965 98437753 -61162030 - Lx7 LINE L1 -1510 6186 5362 7 1336 1179 144 0 80 chr3 98437753 98437965 -61161818 - B2_Mm2 SINE B2 0 195 1 7 1336 6230 213 76 14 chr3 98437965 98438352 -61161431 - Lx7 LINE L1 -519 5361 4943 7 1336 447 19 0 0 chr3 98438352 98438404 -61161379 + (TG)n Simple_repeat Simple_repeat 1 52 0 7 1336 6230 213 76 14 chr3 98438404 98439086 -61160697 - Lx7 LINE L1 -938 4942 4212 7 1336 344 234 53 11 chr3 98439094 98439189 -61160594 + RMER5 LTR ERV1 98 196 -338 7 1336 1243 264 23 9 chr3 98439202 98439549 -61160234 + RMER5 LTR ERV1 171 522 -12 7 1336 379 270 21 0 chr3 98439550 98439654 -61160129 - B3A SINE B2 -89 106 1 7 1336 411 298 101 56 chr3 98439826 98440093 -61159690 + MTE-int LTR MaLR 103 381 -1199 7 1336 240 292 15 0 chr3 98440230 98440295 -61159488 + MTE-int LTR MaLR 778 843 -737 7 1336 1679 231 46 18 chr3 98440298 98440753 -61159030 - RMER6A LTR ERVK -2 754 287 7 1336 30887 6 0 1 chr3 98440753 98447499 -61152284 - L1Md_A LINE L1 -10 6572 1 7 1336 987 186 10 15 chr3 98447499 98447701 -61152082 - RMER6C LTR ERVK -350 340 140 7 1336 588 403 39 16 chr3 98447720 98448101 -61151682 + MTE-int LTR MaLR 787 1176 -404 7 1336 223 231 0 55 chr3 98448486 98448541 -61151242 + polypyrimidine Low_complexity Low_complexity 1 52 0 7 1336 794 223 223 13 chr3 98449316 98449622 -61150161 - ORR1D1 LTR MaLR -1 369 3 7 1336 267 164 0 0 chr3 98449805 98449866 -61149917 + CT-rich Low_complexity Low_complexity 2 62 0 7 1336 5216 260 71 13 chr3 98450653 98452207 -61147576 + Lx7 LINE L1 5779 7429 -267 7 1336 21 36 0 0 chr3 98452508 98452536 -61147247 + AT_rich Low_complexity Low_complexity 1 28 0 7 1336 180 77 0 0 chr3 98452554 98452580 -61147203 + (TG)n Simple_repeat Simple_repeat 1 26 0 7 1336 812 153 35 41 chr3 98453493 98453663 -61146120 - L1_Mus3 LINE L1 -5 6633 6465 7 1336 1467 250 51 41 chr3 98453872 98454450 -61145333 + RMER12 LTR ERVK 1 583 -1265 7 1336 2493 144 15 2 chr3 98454522 98454925 -61144858 - L1_Mus4 LINE L1 0 6636 6229 7 1336 6610 131 31 12 chr3 98454928 98456532 -61143251 + L1VL4 LINE L1 363 1995 -1564 7 1336 2080 268 91 8 chr3 98456533 98457127 -61142656 - RMER13A LTR ERVK -217 643 1 7 1336 3409 78 9 2 chr3 98457439 98457865 -61141918 + L1_Mus1 LINE L1 6139 6567 0 7 1336 8076 50 3 14 chr3 98458300 98458923 -61140860 - L1Md_F2 LINE L1 -1 6584 5970 7 1336 1551 69 5 0 chr3 98458923 98459112 -61140671 - B2_Mm1t SINE B2 -3 190 1 7 1336 35754 72 3 3 chr3 98459112 98464419 -61135364 - L1Md_F2 LINE L1 -616 5969 563 7 1336 230 147 0 0 chr3 98464412 98464446 -61135337 - L1Md_F2 LINE L1 -6485 134 101 7 1336 3226 37 12 0 chr3 98464446 98464851 -61134932 - MTA_Mm-int LTR MaLR -688 410 1 7 1336 3590 40 2 0 chr3 98464851 98465246 -61134537 - MTA_Mm LTR MaLR 0 396 1 7 1336 6030 99 3 28 chr3 98465246 98466314 -61133469 - L1Md_Gf LINE L1 -4480 1406 261 7 1336 6198 84 14 7 chr3 98466430 98467281 -61132502 - L1_Mus2 LINE L1 0 6566 5710 7 1336 22470 147 47 29 chr3 98467281 98471786 -61127997 - L1VL4 LINE L1 -1027 4856 272 7 1336 5247 127 9 15 chr3 98471799 98472588 -61127195 - L1_Mus3 LINE L1 -14 6624 5841 7 1336 4509 156 17 7 chr3 98472589 98473396 -61126387 + L1MC4a LINE L1 5106 5941 -1941 7 1336 210 156 0 0 chr3 98474111 98474156 -61125627 + CT-rich Low_complexity Low_complexity 2 46 0 7 1336 944 254 134 10 chr3 98474257 98474555 -61125228 - MTD LTR MaLR -17 402 68 7 1336 340 326 0 0 chr3 98474580 98474669 -61125114 - PB1D10 SINE Alu -17 100 12 7 1336 298 253 102 29 chr3 98475049 98475240 -61124543 + BGLII_B LTR ERVK 21 255 -186 7 1336 230 290 19 65 chr3 98475238 98475345 -61124438 + RLTR31_Mm LTR ERVK 340 441 -120 7 1336 8165 55 4 3 chr3 98476240 98477826 -61121957 - L1Md_F2 LINE L1 0 6582 4995 7 1336 1288 242 122 3 chr3 98478939 98479291 -61120492 - ORR1B1 LTR MaLR 0 394 1 7 1336 1604 239 8 21 chr3 98479843 98480223 -61119560 + MTC LTR MaLR 45 419 -2 7 1336 3520 3 0 0 chr3 98480445 98480840 -61118943 + L1Md_A LINE L1 6215 6582 0 7 1336 302 178 0 52 chr3 98480907 98480984 -61118799 + (CAGAGA)n Simple_repeat Simple_repeat 2 74 0 7 1336 488 59 15 0 chr3 98480989 98481057 -61118726 + (GA)n Simple_repeat Simple_repeat 2 70 0 7 1336 1249 232 24 14 chr3 98481142 98481435 -61118348 + RLTR18B LTR ERVK 1 296 -216 7 1336 2545 133 8 0 chr3 98482579 98482970 -61116813 - L1_Mm LINE L1 -99 5784 5391 7 1336 1166 108 14 37 chr3 98482970 98483167 -61116616 + LTRIS2 LTR ERV1 321 564 0 7 1336 234 192 19 19 chr3 98483167 98483193 -61116590 + RLTR6_Mm LTR ERV1 586 611 -43 7 1336 292 335 173 36 chr3 98483594 98483842 -61115941 + MER21B LTR ERV1 354 635 -228 7 1336 279 116 0 0 chr3 98483842 98483885 -61115898 + L1_Mus3 LINE L1 5794 5836 -802 7 1336 192 163 0 0 chr3 98485762 98485805 -61113978 + CT-rich Low_complexity Low_complexity 2 44 0 7 1336 933 254 134 10 chr3 98485906 98486204 -61113579 - MTD LTR MaLR -17 402 68 7 1336 350 355 9 0 chr3 98486220 98486327 -61113456 - PB1D10 SINE Alu -7 110 3 7 1336 1223 237 90 43 chr3 98486697 98487186 -61112597 + BGLII_B LTR ERVK 21 434 -7 7 1336 48 0 0 0 chr3 98488812 98488860 -61110923 + AT_rich Low_complexity Low_complexity 1 48 0 7 1336 1338 224 118 8 chr3 98489248 98489603 -61110180 - ORR1B1 LTR MaLR 0 394 1 7 1336 297 0 0 0 chr3 98489978 98490011 -61109772 + (T)n Simple_repeat Simple_repeat 1 33 0 7 1336 1653 231 8 24 chr3 98490178 98490560 -61109223 + MTC LTR MaLR 45 420 -1 7 1336 305 0 50 0 chr3 98490881 98490921 -61108862 + (CAGA)n Simple_repeat Simple_repeat 3 44 0 7 1336 423 0 0 0 chr3 98490936 98490983 -61108800 + (GA)n Simple_repeat Simple_repeat 2 48 0 7 1336 1234 241 20 14 chr3 98491067 98491361 -61108422 + RLTR18B LTR ERVK 1 296 -216 7 1336 233 322 157 25 chr3 98492474 98492595 -61107188 - MER21B LTR ERV1 -398 465 329 7 1336 370 250 31 0 chr3 98492642 98492738 -61107045 + RMER5 LTR ERV1 98 196 -338 7 1336 1321 255 18 6 chr3 98492750 98493089 -61106694 + RMER5 LTR ERV1 170 512 -22 7 1336 390 329 88 62 chr3 98493357 98493629 -61106154 + MTE-int LTR MaLR 103 381 -1199 7 1336 36467 68 6 2 chr3 98493809 98499867 -61099916 - L1Md_F3 LINE L1 -89 6495 411 7 1336 708 163 0 8 chr3 98499870 98500000 -61099783 - RMER6C LTR ERVK -359 331 203 7 1336 563 227 0 0 chr3 98500000 98500119 -61099664 - RMER6A LTR ERVK -556 200 82 1 1336 420 318 57 57 chr3 98500128 98500358 -61099425 + MTE-int LTR MaLR 787 1016 -564 2 1336 623 277 217 27 chr3 98501576 98501880 -61097903 - ORR1D1 LTR MaLR -1 369 8 3 1336 243 157 0 0 chr3 98502069 98502120 -61097663 + CT-rich Low_complexity Low_complexity 2 52 0 4 1336 341 299 51 41 chr3 98503358 98503553 -61096230 - RLTR20D LTR ERVK -312 256 60 5 1336 32291 81 5 3 chr3 98503663 98508992 -61090791 + L1Md_F2 LINE L1 246 5585 -298 6 1336 8488 52 2 5 chr3 98508993 98509984 -61089799 + L1Md_F2 LINE L1 5587 6574 -8 6 1336 2095 133 0 0 chr3 98510002 98510326 -61089457 - MT2B2 LTR ERVL -260 324 1 7 1336 647 257 104 92 chr3 98510328 98510577 -61089206 + RMER20B LTR ERVK 334 585 -42 8 1336 342 268 73 60 chr3 98510851 98511069 -61088714 - L1_Mur3 LINE L1 -6896 816 596 9 1336 822 130 0 0 chr3 98511395 98511526 -61088257 + (TTTC)n Simple_repeat Simple_repeat 1 131 0 1 1336 326 280 108 0 chr3 98511528 98511621 -61088162 - B1_Mus2 SINE Alu -2 145 43 1 1336 288 250 92 126 chr3 98511621 98511647 -61088136 - ID_B1 SINE B4 -2 222 108 1 1336 243 0 0 0 chr3 98511706 98511733 -61088050 + (TTTTG)n Simple_repeat Simple_repeat 1 27 0 1 1336 198 0 0 0 chr3 98512279 98512301 -61087482 + (TTTTTG)n Simple_repeat Simple_repeat 2 23 0 1 1336 888 186 0 0 chr3 98512460 98512605 -61087178 + B1_Mur4 SINE Alu 1 145 -5 1 1336 207 162 0 0 chr3 98512605 98512642 -61087141 + (CAAG)n Simple_repeat Simple_repeat 3 39 0 1 1336 8188 45 4 4 chr3 98513175 98514235 -61085548 - L1Md_F2 LINE L1 0 6582 5525 1 1336 576 0 0 0 chr3 98517896 98517960 -61081823 + (TTCC)n Simple_repeat Simple_repeat 1 64 0 1 1336 1070 196 79 28 chr3 98518413 98518628 -61081155 - URR1A DNA MER1_type 0 226 1 1 1336 282 253 64 56 chr3 98518896 98519049 -61080734 + MIR SINE MIR 17 181 -95 2 1336 427 396 63 26 chr3 98520803 98521153 -61078630 - MER21B LTR ERV1 -163 700 338 2 1336 777 303 58 33 chr3 98521626 98521991 -61077792 - MER21-int LTR ERV1 -168 4023 3650 2 1336 690 13 0 0 chr3 98522180 98522259 -61077524 + (CCA)n Simple_repeat Simple_repeat 2 80 0 2 1336 259 250 85 21 chr3 98522725 98522819 -61076964 - MER21-int LTR ERV1 -3516 675 576 2 1336 448 339 36 65 chr3 98523533 98523717 -61076066 - MT2A LTR ERVL -107 426 245 2 1336 729 53 0 0 chr3 98523717 98523811 -61075972 + (CCA)n Simple_repeat Simple_repeat 1 94 0 2 1336 448 339 36 65 chr3 98523811 98523935 -61075848 - MT2A LTR ERVL -289 244 127 2 1336 7420 226 59 9 chr3 98523940 98526061 -61073722 - Lx7 LINE L1 -1614 6082 3860 2 1336 1087 268 78 19 chr3 98526112 98526485 -61073298 - RLTR22_Mur LTR ERVK -1039 809 415 2 1336 301 266 42 21 chr3 98526533 98526629 -61073154 + RLTR23 LTR ERV1 317 414 -16 2 1336 716 297 27 5 chr3 98526635 98526858 -61072925 + RMER5 LTR ERV1 206 433 -101 2 1336 1464 69 5 0 chr3 98526926 98527114 -61072669 - L1Md_F2 LINE L1 -2 6580 6392 2 1336 259 307 47 41 chr3 98527415 98527585 -61072198 + RLTR42-int LTR ERVK 1230 1400 -4122 3 1336 723 261 109 9 chr3 98527683 98527971 -61071812 - ORR1D1 LTR MaLR -6 353 24 3 1336 447 19 0 0 chr3 98528159 98528211 -61071572 + (TC)n Simple_repeat Simple_repeat 1 52 0 3 1336 275 298 37 37 chr3 98528316 98528424 -61071359 - ORR1D1 LTR MaLR 0 374 267 3 1336 378 252 67 55 chr3 98528796 98528960 -61070823 + RNLTR23 LTR ERVK 477 642 0 3 1336 489 290 7 7 chr3 98529164 98529310 -61070473 + RNERVK23-int LTR ERVK 190 335 -7882 3 1336 270 0 0 0 chr3 98529994 98530024 -61069759 + (T)n Simple_repeat Simple_repeat 1 30 0 3 1336 1247 286 8 8 chr3 98530087 98530446 -61069337 + RNERVK23-int LTR ERVK 2516 2874 -5343 3 1336 1153 192 5 5 chr3 98530453 98530668 -61069115 + RLTR13D6 LTR ERVK 1 215 -687 3 1336 365 146 0 0 chr3 98530668 98530723 -61069060 + L1Md_F2 LINE L1 283 337 -6282 3 1336 33585 70 1 19 chr3 98530716 98533413 -61066370 + L1Md_F2 LINE L1 563 3288 -2598 3 1336 2072 42 0 0 chr3 98533413 98533652 -61066131 + L1Md_A LINE L1 6343 6581 -1 3 1336 33585 65 1 23 chr3 98533652 98535985 -61063798 + L1Md_F2 LINE L1 3289 5589 -297 3 1336 8589 49 1 0 chr3 98535985 98536968 -61062815 + L1Md_F2 LINE L1 5590 6573 -12 3 1336 1202 207 98 63 chr3 98536968 98537686 -61062097 + RLTR13D6 LTR ERVK 200 893 0 3 1336 7744 267 29 14 chr3 98537757 98538351 -61061432 + RNERVK23-int LTR ERVK 2982 3593 -4624 4 1336 2597 118 15 34 chr3 98538351 98538762 -61061021 + RLTR9D LTR ERVK 1 403 0 4 1336 7744 267 29 14 chr3 98538762 98540212 -61059571 + RNERVK23-int LTR ERVK 3594 5057 -3160 4 1336 2636 149 0 19 chr3 98540347 98540757 -61059026 + L1_Mus4 LINE L1 6235 6636 0 4 1336 288 53 0 0 chr3 98540757 98540795 -61058988 + (GA)n Simple_repeat Simple_repeat 1 38 0 4 1336 1067 134 6 0 chr3 98540801 98540980 -61058803 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 4 1336 969 255 143 13 chr3 98540980 98541294 -61058489 + Lx7 LINE L1 7082 7436 -260 4 1336 1777 100 26 0 chr3 98541410 98541641 -61058142 + L1_Mus1 LINE L1 6321 6557 -10 4 1336 261 0 0 0 chr3 98541642 98541671 -61058112 + (TAA)n Simple_repeat Simple_repeat 2 30 0 4 1336 31 58 0 0 chr3 98541796 98541848 -61057935 + AT_rich Low_complexity Low_complexity 1 52 0 4 1336 188 88 59 0 chr3 98541860 98541894 -61057889 + (CATG)n Simple_repeat Simple_repeat 3 38 0 4 1336 235 318 132 19 chr3 98542543 98542809 -61056974 - L1_Mur3 LINE L1 -6910 802 507 5 1336 944 92 7 0 chr3 98543065 98543206 -61056577 + (TTCC)n Simple_repeat Simple_repeat 3 144 0 5 1336 520 184 9 55 chr3 98543206 98543305 -61056478 - B1_Mus2 SINE Alu -8 139 43 5 1336 279 266 224 41 chr3 98543367 98543465 -61056318 + RSINE1 SINE B4 44 159 -6 5 1336 180 0 0 0 chr3 98543476 98543496 -61056287 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 5 1336 638 230 0 15 chr3 98543736 98543873 -61055910 + B1_Mur4 SINE Alu 1 135 -15 5 1336 909 0 0 0 chr3 98544299 98544400 -61055383 + (GGAGA)n Simple_repeat Simple_repeat 5 105 0 5 1336 343 36 35 18 chr3 98544912 98544969 -61054814 + (CAAAAA)n Simple_repeat Simple_repeat 2 59 0 5 1336 613 63 0 21 chr3 98548287 98548384 -61051399 + (TTCC)n Simple_repeat Simple_repeat 1 95 0 5 1336 35585 68 3 3 chr3 98548576 98554760 -61045023 - L1Md_F2 LINE L1 -3 6582 301 5 1336 1020 180 88 42 chr3 98555070 98555285 -61044498 - URR1A DNA MER1_type 0 226 2 6 1336 232 277 94 58 chr3 98555549 98555687 -61044096 + MIR SINE MIR 20 162 -100 6 1336 1094 75 0 7 chr3 98556633 98556781 -61043002 - B1_Mus2 SINE Alu 0 147 1 6 1336 432 0 0 0 chr3 98556918 98556966 -61042817 + (GA)n Simple_repeat Simple_repeat 2 49 0 6 1336 278 391 113 52 chr3 98557607 98557766 -61042017 - MER21B LTR ERV1 -225 638 486 6 1336 207 0 0 0 chr3 98557766 98557789 -61041994 + (TG)n Simple_repeat Simple_repeat 1 23 0 6 1336 278 391 113 52 chr3 98557789 98557974 -61041809 - MER21B LTR ERV1 -378 485 273 6 1336 391 303 68 42 chr3 98558395 98558660 -61041123 - MER21-int LTR ERV1 -173 4018 3747 6 1336 268 301 70 35 chr3 98558853 98559025 -61040758 - MER21-int LTR ERV1 -3438 753 576 6 1336 441 0 0 0 chr3 98559652 98559701 -61040082 + (TA)n Simple_repeat Simple_repeat 2 50 0 6 1336 405 0 0 0 chr3 98559701 98559745 -61040038 + (TG)n Simple_repeat Simple_repeat 2 46 0 6 1336 467 345 31 77 chr3 98559839 98560037 -61039746 - MT2A LTR ERVL -96 437 243 6 1336 213 94 0 0 chr3 98560037 98560069 -61039714 + (CCA)n Simple_repeat Simple_repeat 1 32 0 6 1336 467 345 31 77 chr3 98560069 98560196 -61039587 - MT2A LTR ERVL -291 242 127 6 1336 677 215 57 9 chr3 98560198 98560493 -61039290 - Lx6 LINE L1 -1597 6099 5784 7 1336 5645 216 54 17 chr3 98560498 98562145 -61037638 - Lx6 LINE L1 -313 5567 3860 7 1336 1206 265 25 25 chr3 98562197 98562592 -61037191 - RLTR22_Mur LTR ERVK -1039 809 415 7 1336 273 250 86 111 chr3 98562613 98562730 -61037053 + RLTR23 LTR ERV1 301 414 -16 7 1336 1077 284 28 16 chr3 98562736 98563054 -61036729 + RMER5 LTR ERV1 204 525 -9 7 1336 251 288 27 0 chr3 98563069 98563159 -61036624 - B3A SINE B2 -123 93 2 7 1336 409 322 44 61 chr3 98563417 98563645 -61036138 + MTE-int LTR MaLR 158 381 -1199 7 1336 2684 211 24 51 chr3 98563854 98564524 -61035259 - RMER6A LTR ERVK -3 753 102 7 1336 180 0 0 0 chr3 98564524 98564544 -61035239 + (T)n Simple_repeat Simple_repeat 1 20 0 7 1336 987 350 44 21 chr3 98564569 98564954 -61034829 + MTE-int LTR MaLR 783 1176 -404 7 1337 945 241 185 0 chr3 98566144 98566447 -61033336 - ORR1D1 LTR MaLR -8 366 8 7 1337 639 75 0 0 chr3 98566620 98566714 -61033069 + (TC)n Simple_repeat Simple_repeat 1 94 0 7 1337 315 0 0 0 chr3 98566714 98566748 -61033035 + (CA)n Simple_repeat Simple_repeat 1 35 0 8 1337 875 255 185 0 chr3 98566866 98567164 -61032619 - ORR1D1 LTR MaLR -14 360 8 8 1337 546 133 0 0 chr3 98567337 98567450 -61032333 + (TC)n Simple_repeat Simple_repeat 2 114 0 8 1337 405 0 0 0 chr3 98567450 98567495 -61032288 + (CA)n Simple_repeat Simple_repeat 1 45 0 8 1337 379 261 40 36 chr3 98567599 98567758 -61032025 - ORR1D1 LTR MaLR 0 374 163 8 1337 1748 213 48 14 chr3 98568058 98568458 -61031325 + RMER19A LTR ERVK 216 725 -12 8 1337 1521 177 31 28 chr3 98568514 98568839 -61030944 + ORR1A3 LTR MaLR 1 326 0 8 1337 326 158 25 62 chr3 98568839 98568920 -61030863 + ORR1A3-int LTR MaLR 1 78 -1431 8 1337 4560 205 50 41 chr3 98568933 98570151 -61029632 + MYSERV16_I-int LTR ERVK 86 1314 -1012 8 1337 8778 156 18 18 chr3 98570151 98571895 -61027888 - L1_Mm LINE L1 -1846 4037 2293 8 1337 7961 137 5 3 chr3 98571886 98574118 -61025665 + L1_Mus3 LINE L1 4394 6632 -6 8 1337 4068 167 57 9 chr3 98574153 98575130 -61024653 + MYSERV16_I-int LTR ERVK 1303 2326 0 8 1337 2942 187 16 23 chr3 98575130 98575694 -61024089 + RLTR20B2 LTR ERVK 1 560 0 8 1337 1727 211 3 32 chr3 98575694 98576060 -61023723 - ORR1D1-int LTR MaLR -1519 444 90 8 1337 1818 181 13 0 chr3 98576060 98576375 -61023408 + ORR1A2 LTR MaLR 1 319 -8 9 1337 2885 196 18 4 chr3 98576379 98576931 -61022852 + ORR1A2-int LTR MaLR 1 560 -1403 9 1337 670 243 15 106 chr3 98576868 98577066 -61022717 + MT2B LTR ERVL 104 283 -318 9 1337 36951 42 10 0 chr3 98577066 98583282 -61016501 - L1Md_T LINE L1 -2 6580 305 9 1337 469 273 39 47 chr3 98583282 98583409 -61016374 + B1_Mus2 SINE Alu 1 126 -21 9 1337 5678 175 10 102 chr3 98583299 98584646 -61015137 + ORR1A2-int LTR MaLR 742 1963 0 9 1337 1707 159 28 15 chr3 98584646 98584971 -61014812 + ORR1A2 LTR MaLR 1 329 0 9 1337 1881 243 68 20 chr3 98585405 98586056 -61013727 + Lx7 LINE L1 5781 6462 -1234 9 1337 1709 154 171 3 chr3 98586065 98586450 -61013333 - RLTR47_MM LTR ERV1 -82 450 1 9 1337 783 324 5 8 chr3 98586545 98586921 -61012862 - RLTR6-int LTR ERV1 -74 7704 7330 9 1337 323 271 37 0 chr3 98587579 98587686 -61012097 - MURVY-int LTR ERV1 -2309 5143 5033 9 1337 459 0 0 0 chr3 98588042 98588093 -61011690 + (CAAAA)n Simple_repeat Simple_repeat 2 52 0 9 1337 211 235 21 62 chr3 98589002 98589147 -61010636 + (TGAG)n Simple_repeat Simple_repeat 2 140 0 9 1337 503 313 9 9 chr3 98589447 98589663 -61010120 - MuRRS4-int LTR ERV1 -3541 1522 1307 1 1337 521 192 226 0 chr3 98591113 98591259 -61008524 - RLTR47_MM LTR ERV1 0 532 354 1 1337 5529 107 9 29 chr3 98591303 98592366 -61007417 + L1_Mus4 LINE L1 5428 6469 -167 1 1337 834 11 0 0 chr3 98592366 98592461 -61007322 + (GGAA)n Simple_repeat Simple_repeat 2 96 0 1 1337 834 260 136 16 chr3 98592461 98592778 -61007005 + Lx7 LINE L1 7082 7436 -260 1 1337 28 0 0 0 chr3 98593044 98593072 -61006711 + AT_rich Low_complexity Low_complexity 1 28 0 1 1337 24 53 0 0 chr3 98595245 98595283 -61004500 + AT_rich Low_complexity Low_complexity 1 38 0 1 1337 24573 64 6 1 chr3 98595284 98599408 -61000375 - L1Md_F2 LINE L1 -1 6581 2437 1 1337 2778 127 7 2 chr3 98599417 98599842 -60999941 - L1_Mus3 LINE L1 -6 6632 6206 1 1337 973 53 0 8 chr3 98599842 98599975 -60999808 + L1_Mus4 LINE L1 5668 5799 -837 1 1337 693 56 0 0 chr3 98600077 98600167 -60999616 + (TTCC)n Simple_repeat Simple_repeat 3 92 0 1 1337 482 219 10 10 chr3 98600169 98600266 -60999517 - B1_Mus2 SINE Alu -8 139 43 1 1337 310 309 15 0 chr3 98600452 98600520 -60999263 + RSINE1 SINE B4 8 76 -89 1 1337 216 0 0 0 chr3 98600596 98600620 -60999163 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 1 1337 627 248 0 0 chr3 98600860 98600993 -60998790 + B1_Mur4 SINE Alu 1 133 -17 1 1337 495 0 0 0 chr3 98601435 98601490 -60998293 + (GA)n Simple_repeat Simple_repeat 1 55 0 1 1337 219 80 39 39 chr3 98601502 98601554 -60998229 + GA-rich Low_complexity Low_complexity 4 55 0 1 1337 7436 113 14 7 chr3 98601806 98603743 -60996040 + L1Md_F LINE L1 357 2308 -3575 1 1337 1616 52 0 0 chr3 98603744 98603955 -60995828 - L1Md_T LINE L1 0 6582 6372 1 1337 1758 116 3 0 chr3 98603955 98604247 -60995536 + MusHAL1 LINE L1 1097 1389 -1323 1 1337 3900 181 42 25 chr3 98604267 98605108 -60994675 - RLTR13A LTR ERVK 0 855 1 1 1337 9884 91 33 24 chr3 98605122 98606688 -60993095 - ETnERV3-int LTR ERVK -28 5780 4202 1 1337 8470 91 16 14 chr3 98606679 98607967 -60991816 - ETnERV2-int LTR ERVK -4675 2731 1441 1 1337 6085 115 2 0 chr3 98607967 98608947 -60990836 + L1Md_F LINE L1 3370 4351 -1532 1 1337 939 120 0 0 chr3 98612216 98612374 -60987409 + (TTCC)n Simple_repeat Simple_repeat 1 158 0 1 1337 841 195 92 29 chr3 98612843 98613049 -60986734 - URR1A DNA MER1_type 0 226 8 1 1337 205 288 80 36 chr3 98613323 98613460 -60986323 + MIR SINE MIR 20 162 -100 1 1337 338 412 51 10 chr3 98615182 98615496 -60984287 - MER21B LTR ERV1 -204 659 333 1 1337 774 300 65 32 chr3 98615966 98616335 -60983448 - MER21-int LTR ERV1 -168 4023 3643 1 1337 414 0 0 0 chr3 98616500 98616546 -60983237 + (CA)n Simple_repeat Simple_repeat 2 47 0 1 1337 1151 55 0 0 chr3 98616817 98616962 -60982821 + B1_Mus2 SINE Alu 3 147 0 1 1337 225 94 0 0 chr3 98616962 98616994 -60982789 + (A)n Simple_repeat Simple_repeat 1 32 0 1 1337 369 283 83 44 chr3 98617091 98617272 -60982511 - MER21-int LTR ERV1 -3413 778 591 1 1337 460 332 63 42 chr3 98618056 98618241 -60981542 - MT2A LTR ERVL -109 424 244 1 1337 618 39 0 0 chr3 98618241 98618318 -60981465 + (CAG)n Simple_repeat Simple_repeat 1 77 0 1 1337 460 332 63 42 chr3 98618318 98618465 -60981318 - MT2A LTR ERVL -290 243 85 1 1337 180 0 0 0 chr3 98620680 98620700 -60979083 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 1 1337 1791 218 47 17 chr3 98620928 98621335 -60978448 - MTD LTR MaLR 0 419 1 1 1337 310 169 145 0 chr3 98621754 98621837 -60977946 + B3 SINE B2 86 180 -36 1 1337 508 252 58 22 chr3 98624458 98624596 -60975187 + B1_Mm SINE Alu 5 147 0 1 1337 31 44 0 0 chr3 98624729 98624774 -60975009 + AT_rich Low_complexity Low_complexity 1 45 0 1 1337 188 163 0 23 chr3 98624892 98624936 -60974847 + (CGGG)n Simple_repeat Simple_repeat 4 46 0 1 1337 3145 203 12 17 chr3 98626516 98626598 -60973185 + Lx5 LINE L1 6411 6488 -562 1 1337 2096 81 166 12 chr3 98626598 98626936 -60972847 - RLTR10 LTR ERVK 0 390 1 1 1337 3145 203 12 17 chr3 98626936 98627496 -60972287 + Lx5 LINE L1 6489 7050 0 1 1337 464 264 193 16 chr3 98627500 98627692 -60972091 - Lx8 LINE L1 -285 7188 6963 1 1337 644 181 57 13 chr3 98627692 98627849 -60971934 + MTC LTR MaLR 250 413 -8 1 1337 1973 276 71 16 chr3 98627856 98628475 -60971308 - Lx8 LINE L1 -517 6956 6304 1 1337 333 0 0 0 chr3 98628538 98628575 -60971208 + (CA)n Simple_repeat Simple_repeat 1 37 0 1 1337 452 219 32 73 chr3 98628575 98628698 -60971085 + Lx8 LINE L1 6775 6892 -581 1 1337 2035 135 16 0 chr3 98628698 98629002 -60970781 + RLTR27 LTR ERVK 1 309 0 1 1337 1663 73 31 186 chr3 98629078 98629432 -60970351 + RLTR10-int LTR ERVK 554 852 -1135 1 1337 748 147 51 60 chr3 98629501 98629771 -60970012 + IAP-d-int LTR ERVK 78 496 -6046 1 1337 2076 74 160 0 chr3 98629770 98630107 -60969676 + IAP-d-int LTR ERVK 5010 5400 -1142 1 1337 994 84 18 0 chr3 98630105 98630319 -60969464 + IAP-d-int LTR ERVK 5766 6021 -521 1 1337 1465 112 5 0 chr3 98630322 98630518 -60969265 + IAP-d-int LTR ERVK 6128 6324 -218 1 1337 1190 108 48 0 chr3 98630595 98630781 -60969002 + RLTR27 LTR ERVK 115 309 0 1 1337 221 140 0 23 chr3 98630904 98630948 -60968835 + (TATG)n Simple_repeat Simple_repeat 2 44 0 1 1337 7599 133 12 12 chr3 98630958 98632183 -60967600 - Lx2A LINE L1 -1 7007 5783 1 1337 600 14 0 0 chr3 98632191 98632260 -60967523 + (TA)n Simple_repeat Simple_repeat 2 70 0 1 1337 8225 43 6 1 chr3 98632260 98633633 -60966150 - L1Md_F2 LINE L1 -23 6559 5180 1 1337 3721 74 2 14 chr3 98633623 98634118 -60965665 + L1Md_F2 LINE L1 4703 5191 -692 1 1337 16775 178 11 214 chr3 98634114 98634629 -60965154 - L1VL4 LINE L1 -85 5801 5305 1 1337 1732 46 5 0 chr3 98634629 98634847 -60964936 - L1Md_F2 LINE L1 0 6582 6364 1 1337 16775 178 11 214 chr3 98634847 98635895 -60963888 - L1VL4 LINE L1 -582 5304 4655 1 1337 276 30 0 0 chr3 98635895 98635928 -60963855 + (TTA)n Simple_repeat Simple_repeat 1 33 0 1 1337 4124 71 26 2 chr3 98635928 98636465 -60963318 - L1_Mus1 LINE L1 -10 6557 6008 1 1337 16775 178 11 214 chr3 98636465 98637235 -60962548 - L1VL4 LINE L1 -1232 4654 3947 1 1337 1257 89 0 32 chr3 98637235 98637421 -60962362 - L1_Mus2 LINE L1 -1 6565 6386 1 1337 814 206 42 5 chr3 98637424 98637614 -60962169 - RLTR26 LTR ERVK -352 290 94 1 1337 16775 175 10 187 chr3 98637614 98641199 -60958584 - L1VL4 LINE L1 -1940 3943 854 1 1337 332 199 34 12 chr3 98641662 98641774 -60958009 - Lx6 LINE L1 -1701 5943 5827 1 1337 439 231 22 0 chr3 98641977 98642068 -60957715 + B3 SINE B2 1 93 -123 1 1337 444 182 80 0 chr3 98642068 98642156 -60957627 + RLTR18B LTR ERVK 1 95 -417 1 1337 1592 151 20 109 chr3 98642160 98642510 -60957273 - ORR1A2 LTR MaLR -8 319 1 1 1337 1411 170 87 0 chr3 98642511 98642776 -60957007 + RLTR18B LTR ERVK 92 379 -133 1 1337 1158 82 0 0 chr3 98644256 98644402 -60955381 + B1_Mm SINE Alu 1 146 -1 1 1337 2488 62 0 3 chr3 98644414 98644753 -60955030 + ORR1A1 LTR MaLR 1 338 -8 1 1337 1498 231 19 11 chr3 98645542 98645901 -60953882 + RLTR14 LTR ERV1 2 363 -19 1 1337 418 285 84 12 chr3 98646485 98646652 -60953131 + B3 SINE B2 38 216 0 1 1337 927 186 0 0 chr3 98648244 98648468 -60951315 + CT-rich Low_complexity Low_complexity 1 224 0 1 1337 6849 181 74 7 chr3 98648502 98650020 -60949763 - L1_Mm LINE L1 -2728 3155 1537 1 1337 2338 111 29 5 chr3 98650666 98650690 -60949093 - L1VL4 LINE L1 -2324 1235 1212 1 1337 5594 46 13 0 chr3 98650690 98651363 -60948420 - L1Md_T LINE L1 0 6582 5901 1 1337 4310 156 19 12 chr3 98651363 98652383 -60947400 - L1VL4 LINE L1 -2348 1211 183 1 1337 375 304 0 0 chr3 98652609 98652701 -60947082 + B3 SINE B2 1 92 -124 1 1337 1512 196 70 46 chr3 98652702 98652792 -60946991 + RLTR18B LTR ERVK 1 90 -422 1 1337 2025 137 32 3 chr3 98652792 98653106 -60946677 - ORR1A2 LTR MaLR -4 323 1 1 1337 1512 196 70 46 chr3 98653106 98653385 -60946398 + RLTR18B LTR ERVK 91 379 -133 1 1337 275 0 29 0 chr3 98653655 98653690 -60946093 + (TTG)n Simple_repeat Simple_repeat 1 36 0 1 1337 1707 227 16 5 chr3 98655592 98655969 -60943814 + RLTR14 LTR ERV1 2 382 0 1 1337 743 306 5 0 chr3 98658164 98658357 -60941426 - Lx5 LINE L1 -402 6648 6455 1 1337 1057 317 30 38 chr3 98658542 98658968 -60940815 + Lx6 LINE L1 7030 7452 -8 1 1337 494 290 25 25 chr3 98659573 98659771 -60940012 + B3A SINE B2 1 198 0 1 1337 32 57 0 0 chr3 98662539 98662592 -60937191 + AT_rich Low_complexity Low_complexity 1 53 0 1 1337 1458 55 33 0 chr3 98662681 98662862 -60936921 + B2_Mm1t SINE B2 2 188 -5 1 1337 3043 187 38 57 chr3 98662919 98663572 -60936211 + Lx5 LINE L1 6409 7049 -1 1 1337 224 59 29 0 chr3 98663963 98663997 -60935786 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1 1337 316 298 66 8 chr3 98664732 98664854 -60934929 - L1M5 LINE L1 -2982 3164 3036 1 1337 3539 198 85 9 chr3 98665378 98667037 -60932746 + Lx5 LINE L1 5239 7041 -9 1 1337 1155 210 5 14 chr3 98667040 98667262 -60932521 + MTC LTR MaLR 193 412 -9 1 1337 22509 2 0 0 chr3 98667295 98670628 -60929155 - L1Md_A LINE L1 -1 6581 3249 1 1337 696 265 30 60 chr3 98670831 98671032 -60928751 - B3A SINE B2 -2 196 2 1 1337 834 340 108 83 chr3 98671827 98672346 -60927437 + MLT1F2 LTR MaLR 29 560 0 1 1337 189 293 106 68 chr3 98672499 98672631 -60927152 + MIRc SINE MIR 40 176 -92 1 1337 273 302 84 9 chr3 98672933 98673040 -60926743 - MLT1A1 LTR MaLR 0 408 294 1 1337 233 146 21 0 chr3 98674112 98674160 -60925623 + CT-rich Low_complexity Low_complexity 2 50 0 1 1337 1209 148 49 10 chr3 98674252 98674457 -60925326 - URR1B DNA MER1_type 0 225 13 1 1337 1379 246 73 36 chr3 98674447 98674805 -60924978 + MTD LTR MaLR 27 397 -22 1 1337 493 240 24 8 chr3 98674811 98674937 -60924846 - RMER5 LTR ERV1 -42 492 365 1 1337 267 213 0 0 chr3 98674939 98674986 -60924797 - RMER5 LTR ERV1 -271 263 217 1 1337 204 111 0 0 chr3 98675193 98675229 -60924554 + (CAA)n Simple_repeat Simple_repeat 2 37 0 1 1337 821 146 24 0 chr3 98675230 98675395 -60924388 + CT-rich Low_complexity Low_complexity 3 171 0 1 1337 372 340 26 45 chr3 98675456 98675729 -60924054 - Lx8 LINE L1 -198 7275 6996 1 1337 515 16 16 0 chr3 98675730 98675794 -60923989 + (TC)n Simple_repeat Simple_repeat 2 66 0 1 1337 459 0 0 0 chr3 98675794 98675844 -60923939 + (TG)n Simple_repeat Simple_repeat 2 52 0 1 1337 532 299 103 10 chr3 98676514 98676805 -60922978 - L1MC LINE L1 -689 5655 5338 1 1337 772 275 22 48 chr3 98677921 98678150 -60921633 - MTD LTR MaLR -196 223 1 1 1337 412 203 201 20 chr3 98678864 98679112 -60920671 - L1MA5 LINE L1 -6 6294 6010 2 1337 1080 93 0 0 chr3 98679460 98679632 -60920151 + (TC)n Simple_repeat Simple_repeat 2 173 0 2 1337 297 0 0 0 chr3 98679863 98679896 -60919887 + (CA)n Simple_repeat Simple_repeat 2 34 0 2 1337 184 237 0 84 chr3 98680963 98681046 -60918737 + MIRc SINE MIR 28 103 -165 2 1337 302 0 0 26 chr3 98681622 98681661 -60918122 + (TAA)n Simple_repeat Simple_repeat 2 39 0 2 1337 257 306 71 36 chr3 98681893 98682005 -60917778 + PB1D10 SINE Alu 1 116 -1 2 1337 866 27 67 0 chr3 98682054 98682204 -60917579 + (CA)n Simple_repeat Simple_repeat 1 160 0 2 1337 283 402 27 0 chr3 98683089 98683201 -60916582 + PB1D9 SINE Alu 4 118 -2 2 1337 22 0 0 0 chr3 98683488 98683510 -60916273 + AT_rich Low_complexity Low_complexity 1 22 0 2 1337 260 320 65 45 chr3 98683947 98684128 -60915655 + MIRb SINE MIR 46 228 -34 2 1337 189 313 93 35 chr3 98685314 98685400 -60914383 - L3 LINE CR1 -108 4381 4291 2 1337 261 0 0 0 chr3 98685412 98685441 -60914342 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 2 1337 305 288 178 22 chr3 98685521 98685656 -60914127 + HAL1-3A_ME LINE L1 2282 2437 -421 2 1337 359 102 0 0 chr3 98686593 98686642 -60913141 + HAL1-3A_ME LINE L1 1970 2018 -840 2 1337 351 146 41 20 chr3 98686657 98686804 -60912979 + (CA)n Simple_repeat Simple_repeat 1 150 0 2 1337 239 0 0 31 chr3 98689968 98690000 -60909783 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 2 1337 675 291 270 48 chr3 98690260 98690692 -60909091 + MER68 LTR ERVL 1 528 -35 2 1337 3885 48 122 0 chr3 98693108 98693607 -60906176 + LTRIS2 LTR ERV1 5 564 0 2 1337 215 57 55 36 chr3 98694246 98694301 -60905482 + (CAAA)n Simple_repeat Simple_repeat 2 57 0 2 1337 5933 8 0 0 chr3 98694864 98695520 -60904263 - L1Md_T LINE L1 0 6582 5927 2 1337 743 75 328 8 chr3 98695520 98695654 -60904129 + B2_Mm2 SINE B2 5 181 -14 2 1337 1162 96 0 0 chr3 98695654 98695811 -60903972 + B2_Mm2 SINE B2 1 157 -38 2 1338 390 42 0 0 chr3 98697680 98697728 -60902055 + (TG)n Simple_repeat Simple_repeat 1 48 0 2 1338 411 21 0 0 chr3 98697728 98697775 -60902008 + (GA)n Simple_repeat Simple_repeat 1 48 0 2 1338 659 267 38 27 chr3 98698037 98698222 -60901561 + MTEa LTR MaLR 1 187 -192 2 1338 499 347 0 0 chr3 98698220 98698351 -60901432 + B1F SINE Alu 6 136 -13 2 1338 672 13 0 0 chr3 98698351 98698428 -60901355 + (CAAAG)n Simple_repeat Simple_repeat 3 79 0 2 1338 499 347 0 0 chr3 98698428 98698440 -60901343 + B1F SINE Alu 137 148 -1 2 1338 504 291 94 94 chr3 98698440 98698664 -60901119 + MTEa LTR MaLR 156 379 0 2 1338 2788 141 53 35 chr3 98698715 98699222 -60900561 + RMER20A LTR ERVK 1 516 0 2 1338 441 0 0 0 chr3 98699614 98699663 -60900120 + (TG)n Simple_repeat Simple_repeat 1 49 0 2 1338 618 185 22 29 chr3 98699669 98699817 -60899966 - B1_Mus1 SINE Alu -6 143 6 2 1338 334 286 79 18 chr3 98699715 98699829 -60899954 - B4 SINE B4 -93 199 79 2 1338 1625 225 39 33 chr3 98699922 98700285 -60899498 - MTD LTR MaLR -54 365 1 2 1338 342 315 130 25 chr3 98702794 98703002 -60896781 - MIRm SINE MIR 0 262 33 2 1338 36786 37 6 6 chr3 98703293 98709674 -60890109 - L1Md_T LINE L1 0 6582 208 2 1338 4727 161 14 116 chr3 98710283 98711600 -60888183 + L1_Mur3 LINE L1 1236 2418 -3462 2 1338 318 149 115 0 chr3 98711609 98711696 -60888087 - Lx LINE L1 0 6654 6558 2 1338 1685 171 52 8 chr3 98711700 98712088 -60887695 + L1_Mur3 LINE L1 3363 3767 -2113 2 1338 6428 56 1 0 chr3 98712114 98712960 -60886823 + L1Md_F2 LINE L1 4739 5585 -298 2 1338 7843 53 7 2 chr3 98712961 98713952 -60885831 + L1Md_F2 LINE L1 5587 6582 0 2 1338 2314 127 60 15 chr3 98713954 98714354 -60885429 - RMER6B LTR ERVK -43 418 1 2 1338 4850 183 152 10 chr3 98714354 98715080 -60884703 + L1_Mur3 LINE L1 3762 4631 -1249 2 1338 342 0 0 0 chr3 98715080 98715118 -60884665 + (CCA)n Simple_repeat Simple_repeat 1 38 0 2 1338 4850 183 152 10 chr3 98715118 98715619 -60884164 + L1_Mur3 LINE L1 4632 5163 -717 2 1338 4495 197 52 38 chr3 98715616 98716394 -60883389 + Lx7 LINE L1 6579 7371 -325 2 1338 261 75 0 0 chr3 98716394 98716434 -60883349 + (TTAG)n Simple_repeat Simple_repeat 1 40 0 2 1338 4495 197 52 38 chr3 98716434 98716758 -60883025 + Lx7 LINE L1 7372 7696 0 2 1338 568 149 275 5 chr3 98716786 98716975 -60882808 - Lx9 LINE L1 -22 7622 7383 2 1338 780 224 20 0 chr3 98716998 98717194 -60882589 + L1_Rod LINE L1 5647 5846 -1 2 1338 261 300 76 15 chr3 98718369 98718501 -60881282 + MER3 DNA MER1_type 70 209 0 2 1338 439 333 0 30 chr3 98718650 98718817 -60880966 + Lx8 LINE L1 7047 7208 -265 2 1338 190 213 42 11 chr3 98719249 98719344 -60880439 + (TA)n Simple_repeat Simple_repeat 1 98 0 2 1338 909 0 0 0 chr3 98719371 98719472 -60880311 + (TATATG)n Simple_repeat Simple_repeat 5 105 0 2 1338 456 19 0 0 chr3 98721404 98721457 -60878326 + (CTCTG)n Simple_repeat Simple_repeat 3 55 0 2 1338 724 186 0 18 chr3 98721478 98721642 -60878141 + CT-rich Low_complexity Low_complexity 3 163 0 2 1338 542 214 7 0 chr3 98721655 98721795 -60877988 + (TA)n Simple_repeat Simple_repeat 1 141 0 2 1338 234 128 0 0 chr3 98722277 98722316 -60877467 + (CTTTG)n Simple_repeat Simple_repeat 4 42 0 2 1338 363 341 28 50 chr3 98723114 98723293 -60876490 + MIR SINE MIR 22 196 -66 2 1338 1994 250 90 26 chr3 98723517 98724063 -60875720 - Lx6 LINE L1 -4 7456 6876 2 1338 183 325 81 11 chr3 98724262 98724349 -60875434 + L2 LINE L2 2143 2235 -1184 2 1338 21 0 0 0 chr3 98725446 98725467 -60874316 + AT_rich Low_complexity Low_complexity 1 21 0 2 1338 651 159 0 0 chr3 98725969 98726101 -60873682 + (CA)n Simple_repeat Simple_repeat 2 133 0 2 1338 1111 226 146 60 chr3 98727455 98727804 -60871979 + MTE2a LTR MaLR 1 379 0 2 1338 237 213 33 0 chr3 98727890 98727951 -60871832 + MTE2b LTR MaLR 294 356 -23 2 1338 3197 61 5 8 chr3 98728060 98728457 -60871326 - MTA_Mm LTR MaLR 0 396 1 2 1338 902 104 14 0 chr3 98729001 98729145 -60870638 + (TTTC)n Simple_repeat Simple_repeat 2 147 0 2 1338 932 100 9 0 chr3 98729147 98729287 -60870496 - B1_Mus2 SINE Alu -6 141 1 2 1338 275 371 73 31 chr3 98729375 98729567 -60870216 - MLT1H LTR MaLR -325 224 25 2 1338 2393 214 35 5 chr3 98730033 98730465 -60869318 + Lx6 LINE L1 6997 7441 -19 2 1338 1364 152 9 18 chr3 98730870 98731098 -60868685 - URR1A DNA MER1_type 0 226 1 2 1338 1287 103 75 5 chr3 98731381 98731595 -60868188 + Lx3_Mus LINE L1 6781 7009 0 2 1338 28 0 0 0 chr3 98731595 98731623 -60868160 + AT_rich Low_complexity Low_complexity 1 28 0 2 1338 259 328 47 42 chr3 98731855 98732046 -60867737 - MamGypLTR2b LTR Gypsy -43 879 688 2 1338 983 305 35 35 chr3 98732350 98732727 -60867056 - MTEa LTR MaLR 0 379 3 2 1338 1667 83 33 4 chr3 98733722 98733965 -60865818 + L1Md_F2 LINE L1 6332 6581 -1 2 1338 225 94 0 0 chr3 98734056 98734088 -60865695 + (CG)n Simple_repeat Simple_repeat 2 33 0 2 1338 305 166 46 29 chr3 98734088 98734262 -60865521 + (CA)n Simple_repeat Simple_repeat 2 178 0 2 1338 258 163 29 52 chr3 98734335 98734471 -60865312 + (CA)n Simple_repeat Simple_repeat 1 133 0 2 1338 540 0 0 0 chr3 98734471 98734531 -60865252 + (GA)n Simple_repeat Simple_repeat 2 61 0 2 1338 21 0 0 0 chr3 98735520 98735541 -60864242 + AT_rich Low_complexity Low_complexity 1 21 0 2 1338 21 0 0 0 chr3 98735572 98735593 -60864190 + AT_rich Low_complexity Low_complexity 1 21 0 2 1338 213 39 0 0 chr3 98736004 98736030 -60863753 + (TC)n Simple_repeat Simple_repeat 1 26 0 2 1338 229 266 48 96 chr3 98737655 98737759 -60862024 + MIRc SINE MIR 58 156 -112 2 1338 251 303 52 60 chr3 98738471 98738587 -60861196 - MIRb SINE MIR -14 254 140 2 1338 314 355 86 16 chr3 98740902 98741088 -60858695 + MER58A DNA MER1_type 1 199 -25 2 1338 1121 198 38 10 chr3 98741534 98741743 -60858040 + B3 SINE B2 2 216 0 2 1338 211 302 96 44 chr3 98742878 98743013 -60856770 - MIRc SINE MIR -67 201 60 2 1338 183 42 0 0 chr3 98745262 98745286 -60854497 + (CGGGG)n Simple_repeat Simple_repeat 5 28 0 2 1338 284 85 43 0 chr3 98746496 98746543 -60853240 + (TTTC)n Simple_repeat Simple_repeat 3 51 0 2 1338 1022 218 24 0 chr3 98746565 98746771 -60853012 + B3 SINE B2 6 216 0 2 1338 527 202 12 0 chr3 98746850 98746965 -60852818 + B3 SINE B2 1 118 -75 2 1338 312 227 148 0 chr3 98747089 98747177 -60852606 + B1_Mus2 SINE Alu 5 105 -15 2 1338 1314 81 0 0 chr3 98747177 98747438 -60852345 + (GAA)n Simple_repeat Simple_repeat 1 261 0 2 1338 1083 50 41 28 chr3 98747497 98747642 -60852141 - B1_Mus2 SINE Alu 0 147 1 2 1338 300 237 0 84 chr3 98747727 98747810 -60851973 - B4 SINE B4 0 292 217 2 1338 287 310 33 22 chr3 98747851 98748006 -60851777 - B4A SINE B4 -86 206 36 2 1338 1239 29 14 18 chr3 98748012 98748503 -60851280 + (TG)n Simple_repeat Simple_repeat 1 488 0 2 1338 1100 174 14 33 chr3 98748853 98749067 -60850716 + B3 SINE B2 1 210 -6 2 1338 378 0 0 0 chr3 98749286 98749328 -60850455 + (CA)n Simple_repeat Simple_repeat 1 42 0 2 1338 717 194 11 6 chr3 98749328 98749504 -60850279 + GA-rich Low_complexity Low_complexity 1 177 0 2 1338 376 179 35 9 chr3 98749528 98749641 -60850142 + GA-rich Low_complexity Low_complexity 3 118 0 2 1338 5346 101 13 30 chr3 98749693 98750229 -60849554 + L1VL2 LINE L1 241 763 -5572 2 1338 180 0 0 0 chr3 98750229 98750249 -60849534 + (ATG)n Simple_repeat Simple_repeat 2 21 0 2 1338 5495 101 36 19 chr3 98750249 98750867 -60848916 + L1VL2 LINE L1 764 1379 -2236 2 1338 414 0 0 0 chr3 98750867 98750913 -60848870 + (TTTA)n Simple_repeat Simple_repeat 2 47 0 2 1338 698 83 266 0 chr3 98750915 98751024 -60848759 - B1_Mm SINE Alu -6 141 4 2 1338 5495 102 54 10 chr3 98751024 98751427 -60848356 + L1VL2 LINE L1 1380 1819 -1796 2 1338 321 281 0 0 chr3 98751571 98751660 -60848123 - PB1D10 SINE Alu -2 115 27 2 1338 30 59 0 0 chr3 98752521 98752572 -60847211 + AT_rich Low_complexity Low_complexity 1 51 0 2 1338 235 200 153 0 chr3 98752675 98752760 -60847023 + L1M2 LINE L1 2745 2842 -3301 2 1338 258 243 29 0 chr3 98753192 98753262 -60846521 - ID4_ SINE ID -3 80 9 3 1338 330 319 68 12 chr3 98753467 98753629 -60846154 + MLT2B4 LTR ERVL 117 287 -269 3 1338 236 341 98 8 chr3 98753850 98753983 -60845800 - MIR SINE MIR -86 176 32 3 1338 337 310 35 0 chr3 98754166 98754282 -60845501 + MIRc SINE MIR 149 268 0 3 1338 321 326 30 79 chr3 98754627 98754830 -60844953 - MIR SINE MIR -38 224 32 3 1338 794 149 6 89 chr3 98754952 98755094 -60844689 + URR1B DNA MER1_type 1 134 -91 3 1338 1043 106 0 0 chr3 98755094 98755235 -60844548 + B1_Mm SINE Alu 1 141 -6 3 1338 794 149 6 89 chr3 98755235 98755261 -60844522 + URR1B DNA MER1_type 135 155 -70 3 1338 269 304 22 0 chr3 98755261 98755353 -60844430 + MIRc SINE MIR 161 254 -14 3 1338 248 28 0 53 chr3 98755354 98755392 -60844391 + (TTA)n Simple_repeat Simple_repeat 3 38 0 3 1338 471 62 0 0 chr3 98755393 98755457 -60844326 + URR1B DNA MER1_type 162 225 0 3 1338 205 291 108 54 chr3 98755551 98755718 -60844065 - L2c LINE L2 -160 3227 3052 3 1338 280 331 96 42 chr3 98756293 98756460 -60843323 - MLT1I LTR MaLR -6 405 230 3 1338 216 0 0 0 chr3 98756765 98756789 -60842994 + (A)n Simple_repeat Simple_repeat 1 24 0 3 1338 426 264 200 6 chr3 98757232 98757392 -60842391 + B3 SINE B2 1 191 -25 3 1338 569 82 0 20 chr3 98758807 98758907 -60840876 + L1_Mus3 LINE L1 6541 6638 0 3 1338 345 47 0 0 chr3 98759134 98759177 -60840606 + (TC)n Simple_repeat Simple_repeat 1 43 0 3 1338 378 42 0 0 chr3 98759177 98759225 -60840558 + (TG)n Simple_repeat Simple_repeat 1 48 0 3 1338 2669 248 62 32 chr3 98759772 98761180 -60838603 + L1_Mur3 LINE L1 1409 2105 -3775 3 1338 518 132 0 0 chr3 98761179 98761262 -60838521 + L1_Mm LINE L1 5175 5257 -626 3 1338 2420 68 3 16 chr3 98761271 98761587 -60838196 - L1_Mus2 LINE L1 -236 6330 6019 3 1338 414 0 0 0 chr3 98761588 98761634 -60838149 + (TAAA)n Simple_repeat Simple_repeat 2 47 0 3 1338 239 280 91 55 chr3 98762123 98762342 -60837441 - L1ME3 LINE L1 -184 5978 5752 3 1338 542 250 21 33 chr3 98762402 98762621 -60837162 + L1MA10 LINE L1 5964 6332 -2 3 1338 230 268 11 85 chr3 98762772 98762866 -60836917 + MIRc SINE MIR 112 198 -70 3 1338 21 0 0 0 chr3 98762981 98763002 -60836781 + AT_rich Low_complexity Low_complexity 1 21 0 3 1338 2232 135 32 0 chr3 98763305 98763653 -60836130 - RLTR15 LTR ERVK 0 359 1 3 1338 1261 172 47 16 chr3 98764455 98764709 -60835074 + MTD LTR MaLR 158 419 0 3 1338 1793 228 104 18 chr3 98764736 98765246 -60834537 + RMER15 LTR ERVL 22 575 0 3 1338 1380 242 152 41 chr3 98765579 98766101 -60833682 + Lx8 LINE L1 6872 7471 -2 3 1338 225 288 50 0 chr3 98766258 98766338 -60833445 + L1MD2 LINE L1 6247 6330 -29 3 1338 6000 152 2 12 chr3 98766783 98767769 -60832014 - Lx LINE L1 0 5883 4908 3 1338 5158 122 6 13 chr3 98767772 98768356 -60831427 + Lx LINE L1 5876 6459 -195 3 1338 4861 100 92 95 chr3 98768356 98769252 -60830531 + RLTR13B1 LTR ERVK 1 893 0 3 1338 5158 122 6 13 chr3 98769252 98769450 -60830333 + Lx LINE L1 6460 6653 -1 3 1338 1216 120 130 0 chr3 98770119 98770319 -60829464 + URR1A DNA MER1_type 1 226 0 3 1338 246 264 45 54 chr3 98770617 98770729 -60829054 - MLT1H2 LTR MaLR -6 483 373 3 1338 764 163 6 0 chr3 98772474 98772646 -60827137 + GA-rich Low_complexity Low_complexity 2 174 0 3 1338 392 312 85 23 chr3 98772769 98772946 -60826837 - LTR16D LTR ERVL -241 410 223 3 1338 7307 215 44 26 chr3 98773249 98774768 -60825015 - Lx6 LINE L1 -4 7456 5910 3 1338 6698 170 23 7 chr3 98774763 98775998 -60823785 - L1_Mur3 LINE L1 -433 5447 4194 3 1338 450 146 0 0 chr3 98776064 98776146 -60823637 + (TA)n Simple_repeat Simple_repeat 2 83 0 3 1338 2616 169 100 8 chr3 98776512 98776550 -60823233 - MT2A LTR ERVL 0 533 489 3 1338 297 0 0 0 chr3 98776550 98776583 -60823200 + (TG)n Simple_repeat Simple_repeat 1 33 0 3 1338 2616 169 100 8 chr3 98776583 98777032 -60822751 - MT2A LTR ERVL -45 488 2 3 1338 455 333 123 0 chr3 98777539 98777734 -60822049 - ID_B1 SINE B4 -5 219 1 3 1338 212 221 0 90 chr3 98777942 98778044 -60821739 + MIRc SINE MIR 41 124 -84 3 1338 361 180 18 0 chr3 98779722 98779806 -60819977 + L1_Rod LINE L1 5158 5287 -599 3 1338 298 307 163 28 chr3 98780612 98780753 -60819030 - MLT1A LTR MaLR -34 340 181 3 1338 328 220 35 0 chr3 98780787 98780872 -60818911 + MTE2b LTR MaLR 1 97 -282 3 1338 205 0 18 123 chr3 98780872 98780929 -60818854 + (TTTTTG)n Simple_repeat Simple_repeat 3 53 0 3 1338 557 335 97 26 chr3 98780929 98781156 -60818627 + MTE2b LTR MaLR 100 342 -37 3 1338 519 302 74 15 chr3 98781281 98781684 -60818099 - L1M2 LINE L1 -2972 3171 2745 3 1338 497 289 75 45 chr3 98781687 98781835 -60817948 + B3 SINE B2 1 152 -64 3 1338 405 0 0 0 chr3 98781835 98781880 -60817903 + (CA)n Simple_repeat Simple_repeat 1 45 0 3 1338 497 289 75 45 chr3 98781880 98781930 -60817853 + B3 SINE B2 153 205 -11 3 1338 297 306 10 0 chr3 98781948 98782046 -60817737 - L1M2 LINE L1 -3415 2728 2630 3 1338 536 225 80 40 chr3 98782267 98782392 -60817391 + RSINE1 SINE B4 2 131 -34 3 1338 294 299 169 22 chr3 98782398 98782622 -60817161 - L1M2 LINE L1 -3747 2393 2138 3 1338 346 358 33 34 chr3 98783044 98783196 -60816587 - PB1D7 SINE Alu -1 149 1 3 1338 233 213 0 0 chr3 98783234 98783281 -60816502 + CT-rich Low_complexity Low_complexity 2 48 0 3 1338 213 94 0 0 chr3 98783807 98783839 -60815944 + (TG)n Simple_repeat Simple_repeat 2 33 0 3 1338 258 116 0 0 chr3 98784304 98784347 -60815436 + (A)n Simple_repeat Simple_repeat 1 43 0 3 1338 975 145 84 28 chr3 98784574 98784787 -60814996 - URR1B DNA MER1_type 0 225 1 3 1338 1260 223 115 14 chr3 98785685 98786181 -60813602 - L1M2 LINE L1 -1508 4635 4090 3 1338 216 171 0 0 chr3 98786219 98786260 -60813523 + T-rich Low_complexity Low_complexity 2 42 0 3 1338 526 258 53 39 chr3 98786725 98786745 -60813038 + L1MA6 LINE L1 5776 5789 -502 3 1338 321 345 0 25 chr3 98786745 98786864 -60812919 - PB1D10 SINE Alu 0 117 2 3 1338 610 285 80 22 chr3 98786864 98787235 -60812548 + L1MA6 LINE L1 5790 6196 -104 3 1338 735 138 20 0 chr3 98788061 98788213 -60811570 + GA-rich Low_complexity Low_complexity 2 156 0 3 1338 21 36 0 0 chr3 98788416 98788444 -60811339 + AT_rich Low_complexity Low_complexity 1 28 0 3 1338 612 332 15 57 chr3 98788654 98788916 -60810867 + B4A SINE B4 41 291 -1 3 1338 410 295 25 51 chr3 98789701 98789734 -60810049 - B3 SINE B2 0 216 187 3 1338 486 33 0 0 chr3 98789734 98789794 -60809989 + (TG)n Simple_repeat Simple_repeat 2 61 0 3 1338 410 295 25 51 chr3 98789794 98789898 -60809885 - B3 SINE B2 -30 186 85 3 1338 4222 28 0 2 chr3 98789898 98790392 -60809391 + MT2_Mm LTR ERVL 1 493 0 3 1338 410 295 25 51 chr3 98790392 98790410 -60809373 - B3 SINE B2 -132 84 65 3 1338 8069 14 2 0 chr3 98790410 98791363 -60808420 + MERVL-int LTR ERVL 19 973 -4512 3 1338 406 224 24 0 chr3 98791371 98791456 -60808327 - B3 SINE B2 -127 89 3 3 1338 298 248 131 34 chr3 98791538 98791816 -60807967 - L1M2 LINE L1 -756 5387 5024 3 1338 4654 95 16 5 chr3 98791819 98792749 -60807034 - Lx3_Mus LINE L1 -680 6329 5386 3 1338 4859 65 14 8 chr3 98792749 98793390 -60806393 + Lx3_Mus LINE L1 6365 7009 0 3 1338 710 296 72 19 chr3 98793456 98793752 -60806031 - L1M2 LINE L1 -1142 5001 4685 3 1338 184 0 62 31 chr3 98793752 98793784 -60805999 + (TTTTA)n Simple_repeat Simple_repeat 2 34 0 3 1338 710 296 72 19 chr3 98793784 98793846 -60805937 - L1M2 LINE L1 -1459 4684 4624 3 1338 330 276 114 0 chr3 98793857 98793962 -60805821 - PB1D10 SINE Alu 0 117 1 3 1338 184 115 0 0 chr3 98795728 98795754 -60804029 - L2a LINE L2 -10 3416 3391 3 1338 26 0 0 0 chr3 98797036 98797062 -60802721 + AT_rich Low_complexity Low_complexity 1 26 0 3 1338 849 103 0 0 chr3 98797074 98797200 -60802583 + (TA)n Simple_repeat Simple_repeat 2 127 0 3 1338 1143 243 174 18 chr3 98797200 98797653 -60802130 - Lx8 LINE L1 -60 7413 6890 3 1338 1854 91 11 0 chr3 98798650 98798914 -60800869 + L1_Mus3 LINE L1 6370 6636 -2 3 1338 492 140 9 18 chr3 98798993 98799102 -60800681 + CT-rich Low_complexity Low_complexity 3 110 0 3 1338 589 319 89 0 chr3 98799109 98799278 -60800505 - B3 SINE B2 0 216 33 3 1338 267 244 129 36 chr3 98799555 98799619 -60800164 - L1M2 LINE L1 -665 5626 5560 3 1338 2295 112 14 28 chr3 98799619 98799978 -60799805 + IAPEY2_LTR LTR ERVK 1 354 -3 3 1338 267 244 129 36 chr3 98799978 98800053 -60799730 - L1M2 LINE L1 -732 5559 5474 3 1338 449 246 147 28 chr3 98800154 98800391 -60799392 - L1MB4 LINE L1 -57 6117 5862 3 1338 207 0 0 0 chr3 98800595 98800618 -60799165 + (A)n Simple_repeat Simple_repeat 1 23 0 3 1338 1693 207 31 14 chr3 98800772 98801125 -60798658 - ORR1E LTR MaLR 0 359 1 3 1338 1486 240 27 19 chr3 98801138 98801511 -60798272 - MTEa LTR MaLR -3 376 1 3 1338 1136 317 66 39 chr3 98801511 98801918 -60797865 - MTEa-int LTR MaLR 0 1580 1163 3 1338 920 303 23 67 chr3 98801936 98802279 -60797504 + MTEa LTR MaLR 50 377 -2 3 1338 433 338 50 0 chr3 98802279 98802415 -60797368 - MTEa-int LTR MaLR -423 1157 1015 3 1338 2264 158 42 10 chr3 98802450 98802858 -60796925 - MTC LTR MaLR 0 421 1 3 1338 363 168 30 13 chr3 98802885 98802961 -60796822 + ORR1E LTR MaLR 288 405 -14 3 1338 1319 277 47 12 chr3 98802969 98803312 -60796471 - MTEa-int LTR MaLR -1225 355 1 3 1338 344 145 0 61 chr3 98803317 98803383 -60796400 - MTEa LTR MaLR -3 376 315 3 1338 873 168 7 7 chr3 98803385 98803663 -60796120 + GA-rich Low_complexity Low_complexity 1 278 0 3 1338 242 329 12 25 chr3 98803711 98803792 -60795991 - MTEa LTR MaLR -104 255 176 3 1338 1283 167 24 0 chr3 98804046 98804298 -60795485 + L1_Mur3 LINE L1 3890 4147 -1733 3 1338 300 305 19 0 chr3 98804343 98804448 -60795335 - L1MEf LINE L1 -5257 943 837 3 1338 3260 292 54 18 chr3 98804449 98805684 -60794099 - Lx8 LINE L1 0 7473 6194 3 1338 369 0 0 0 chr3 98805706 98805747 -60794036 + (TG)n Simple_repeat Simple_repeat 2 42 0 3 1338 307 256 13 0 chr3 98805875 98805953 -60793830 + L1_Mur3 LINE L1 5056 5134 -746 3 1338 5289 65 13 1 chr3 98805956 98806818 -60792965 + L1_Mus3 LINE L1 5934 6638 0 3 1338 242 320 51 19 chr3 98806860 98807016 -60792767 + L1_Mur3 LINE L1 5168 5328 -552 3 1338 915 262 180 18 chr3 98807002 98807518 -60792265 + L1_Mur3 LINE L1 5211 5839 -41 3 1338 36206 18 0 7 chr3 98807676 98812840 -60786943 + L1Md_A LINE L1 465 5586 -297 3 1338 9051 3 0 0 chr3 98812840 98813836 -60785947 + L1Md_A LINE L1 5587 6582 0 3 1338 209 158 0 50 chr3 98813843 98813883 -60785900 + polypurine Low_complexity Low_complexity 1 38 0 3 1338 21636 22 1 1 chr3 98814800 98817475 -60782308 + L1Md_T LINE L1 2912 5586 -297 3 1338 8388 35 0 1 chr3 98817475 98818471 -60781312 + L1Md_T LINE L1 5587 6581 -1 3 1338 950 113 0 34 chr3 98818497 98818644 -60781139 + B1_Mus1 SINE Alu 1 142 -6 3 1338 241 317 0 24 chr3 98819267 98819393 -60780390 - L1M5 LINE L1 -2665 3481 3359 3 1338 271 286 57 0 chr3 98819528 98819598 -60780185 - ID2 SINE ID -2 81 8 3 1338 22 0 0 0 chr3 98820076 98820098 -60779685 + AT_rich Low_complexity Low_complexity 1 22 0 3 1338 483 300 67 30 chr3 98820839 98821235 -60778548 - L1ME1 LINE L1 -5 6159 5762 3 1338 192 158 35 17 chr3 98821361 98821419 -60778364 + (TATG)n Simple_repeat Simple_repeat 4 62 0 4 1338 232 311 63 53 chr3 98823158 98823253 -60776530 + Charlie25 DNA MER1_type 2132 2227 -297 4 1338 261 0 0 0 chr3 98823473 98823502 -60776281 + (TG)n Simple_repeat Simple_repeat 2 30 0 4 1338 1046 206 49 35 chr3 98823544 98823831 -60775952 + Lx7 LINE L1 7390 7680 -16 4 1338 400 253 80 0 chr3 98823842 98824004 -60775779 + Charlie5 DNA MER1_type 2422 2596 -28 4 1338 748 259 30 20 chr3 98824246 98824443 -60775340 + B3 SINE B2 3 201 -15 4 1338 234 0 0 0 chr3 98824452 98824478 -60775305 + (CA)n Simple_repeat Simple_repeat 2 27 0 4 1338 286 281 51 20 chr3 98824530 98824628 -60775155 + PB1 SINE Alu 1 101 -26 4 1338 607 302 55 43 chr3 98824904 98825139 -60774644 + MamSINE1 SINE tRNA 27 264 -26 4 1338 307 330 28 126 chr3 98825889 98826104 -60773679 + MLT1E2 LTR MaLR 1 194 -311 4 1338 305 292 78 26 chr3 98826180 98826296 -60773487 + RSINE1 SINE B4 44 165 0 4 1338 376 327 82 19 chr3 98826638 98826797 -60772986 + MIRb SINE MIR 25 193 -75 4 1338 321 145 0 0 chr3 98827887 98827949 -60771834 + (CATA)n Simple_repeat Simple_repeat 2 63 0 4 1339 515 124 0 22 chr3 98828392 98828483 -60771300 + (TTTC)n Simple_repeat Simple_repeat 2 90 0 4 1339 279 0 0 0 chr3 98829504 98829535 -60770248 + (TC)n Simple_repeat Simple_repeat 1 31 0 4 1339 207 0 0 0 chr3 98829535 98829557 -60770226 + (CA)n Simple_repeat Simple_repeat 1 23 0 4 1339 555 222 34 23 chr3 98829660 98829835 -60769948 - Lx4B LINE L1 0 7058 6882 4 1339 659 311 12 6 chr3 98830236 98830398 -60769385 + B3A SINE B2 1 163 -35 4 1339 333 0 0 0 chr3 98830411 98830448 -60769335 + (CA)n Simple_repeat Simple_repeat 1 37 0 4 1339 352 296 43 9 chr3 98831007 98831123 -60768660 - MamRep605 Unknown Unknown -303 573 454 4 1339 337 312 120 68 chr3 98831177 98831469 -60768314 - MER102c DNA MER1_type -1 330 24 4 1339 243 0 0 0 chr3 98831499 98831526 -60768257 + (A)n Simple_repeat Simple_repeat 1 27 0 4 1339 327 362 0 0 chr3 98831692 98831711 -60768072 + (TG)n Simple_repeat Simple_repeat 1 19 0 4 1339 3368 33 8 0 chr3 98831711 98832104 -60767679 - MTA_Mm LTR MaLR 0 396 1 4 1339 327 311 5 0 chr3 98832104 98832327 -60767456 + (TG)n Simple_repeat Simple_repeat 1 224 0 4 1339 318 295 232 65 chr3 98832335 98832473 -60767310 - RSINE1 SINE B4 -1 164 4 4 1339 1359 249 50 28 chr3 98832738 98833097 -60766686 - ORR1D2 LTR MaLR -3 367 1 4 1339 627 271 7 0 chr3 98833224 98833368 -60766415 + B1_Mur1 SINE Alu 2 146 -3 4 1339 258 115 18 88 chr3 98833504 98833561 -60766222 + (TAGA)n Simple_repeat Simple_repeat 1 53 0 4 1339 3748 23 0 0 chr3 98833561 98833957 -60765826 - MTA_Mm LTR MaLR 0 396 1 4 1339 258 115 18 88 chr3 98833957 98834013 -60765770 + (TAGA)n Simple_repeat Simple_repeat 2 54 0 4 1339 245 151 19 0 chr3 98834957 98835010 -60764773 + G-rich Low_complexity Low_complexity 3 56 0 4 1339 7657 41 5 2 chr3 98835816 98836739 -60763044 - L1Md_F3 LINE L1 0 6584 5659 4 1339 14828 38 0 0 chr3 98836752 98839229 -60760554 - L1Md_A LINE L1 0 6582 4107 4 1339 619 243 101 73 chr3 98840065 98840234 -60759549 - L1MA7 LINE L1 0 6291 6129 4 1339 1330 34 0 0 chr3 98840234 98840381 -60759402 - B1_Mm SINE Alu 0 147 1 4 1339 619 243 101 73 chr3 98840381 98840539 -60759244 - L1MA7 LINE L1 -163 6128 5955 4 1339 1037 252 71 51 chr3 98840927 98841370 -60758413 - L1MC4 LINE L1 -751 7131 6674 4 1339 595 315 57 66 chr3 98841608 98841941 -60757842 + MLT1B LTR MaLR 61 390 0 4 1339 395 301 29 41 chr3 98841941 98842111 -60757672 - MLT1D LTR MaLR -21 484 317 4 1339 334 172 62 0 chr3 98842250 98842314 -60757469 + Lx7 LINE L1 5700 5767 -1929 4 1339 971 291 146 20 chr3 98842314 98842446 -60757337 + Lx8 LINE L1 6037 6185 -1288 4 1339 345 82 0 0 chr3 98842446 98842495 -60757288 + (CATA)n Simple_repeat Simple_repeat 2 50 0 4 1339 971 291 146 20 chr3 98842495 98842814 -60756969 + Lx8 LINE L1 6186 6544 -929 4 1339 720 346 49 45 chr3 98842978 98843404 -60756379 - MT2A LTR ERVL -101 432 5 4 1339 2080 301 89 19 chr3 98843408 98844261 -60755522 + Lx8 LINE L1 6552 7464 -9 4 1339 3118 169 25 6 chr3 98844290 98844801 -60754982 - Lx5 LINE L1 -3 7047 6527 4 1339 28 71 0 0 chr3 98844813 98844869 -60754914 + AT_rich Low_complexity Low_complexity 1 56 0 4 1339 390 319 87 40 chr3 98844966 98845116 -60754667 - MLT1D LTR MaLR -470 157 1 4 1339 602 295 24 102 chr3 98845165 98845459 -60754324 - MTE2b LTR MaLR -13 366 96 4 1339 390 248 68 8 chr3 98846284 98846402 -60753381 - MER5A DNA MER1_type -61 128 4 4 1339 201 256 0 0 chr3 98847065 98847108 -60752675 + (CA)n Simple_repeat Simple_repeat 2 44 0 4 1339 836 225 70 66 chr3 98847108 98847382 -60752401 - L1_Mur3 LINE L1 -373 5791 5479 4 1339 601 173 158 2 chr3 98847384 98847539 -60752244 + L1_Mur3 LINE L1 5270 5444 -433 4 1339 940 174 0 20 chr3 98847814 98847961 -60751822 + B1_Mur4 SINE Alu 2 145 -5 4 1339 423 0 0 0 chr3 98850362 98850409 -60749374 + (CAG)n Simple_repeat Simple_repeat 1 47 0 4 1339 525 133 16 11 chr3 98851998 98852129 -60747654 + L1_Mur3 LINE L1 5348 5458 -845 4 1339 466 323 88 71 chr3 98852321 98852661 -60747122 + MTEa LTR MaLR 46 391 -28 4 1339 7929 73 4 16 chr3 98853510 98854547 -60745236 - L1_Mus3 LINE L1 -6 6632 5609 4 1339 387 265 42 24 chr3 98857598 98857764 -60742019 + L1MB7 LINE L1 5319 5486 -682 4 1339 359 231 120 0 chr3 98857754 98857862 -60741921 + L1MB7 LINE L1 5660 5780 -394 4 1339 430 299 111 22 chr3 98857868 98858049 -60741734 + B3A SINE B2 1 197 -1 4 1339 35 0 0 0 chr3 98858050 98858085 -60741698 + AT_rich Low_complexity Low_complexity 1 35 0 4 1339 484 261 91 9 chr3 98858241 98858473 -60741310 + L1MB7 LINE L1 5881 6131 -53 4 1339 3306 104 39 29 chr3 98858660 98859173 -60740610 - Lx2A1 LINE L1 -5 7003 6486 4 1339 537 323 27 1 chr3 98859473 98859726 -60740057 + L1MB1 LINE L1 5515 5772 -406 4 1339 504 0 0 0 chr3 98859901 98859957 -60739826 + (TA)n Simple_repeat Simple_repeat 1 56 0 4 1339 8185 38 1 8 chr3 98859962 98860940 -60738843 - L1Md_F2 LINE L1 -25 6557 5587 4 1339 915 270 75 11 chr3 98861098 98861447 -60738336 + L1MB1 LINE L1 5797 6167 -1 4 1339 1782 285 54 16 chr3 98861845 98862678 -60737105 + Lx5 LINE L1 6273 7045 -5 4 1339 1969 265 31 36 chr3 98863049 98863632 -60736151 - Lx8 LINE L1 0 7473 6894 4 1339 1417 256 17 20 chr3 98863661 98864008 -60735775 - MTD LTR MaLR -68 351 6 4 1339 1949 278 34 63 chr3 98864038 98864721 -60735062 - Lx8 LINE L1 -620 6853 6191 4 1339 1854 260 61 92 chr3 98864875 98865870 -60733913 - L1_Mur3 LINE L1 -1461 4685 3675 4 1339 1712 70 5 0 chr3 98865860 98866074 -60733709 - L1Md_F2 LINE L1 -390 6192 5978 4 1339 2436 74 0 15 chr3 98866068 98866397 -60733386 + L1Md_F2 LINE L1 6194 6517 -65 4 1339 3435 40 25 0 chr3 98866397 98866798 -60732985 + IAPLTR2a LTR ERVK 1 411 0 4 1339 3635 56 0 20 chr3 98866818 98867322 -60732461 + IAPEz-int LTR ERVK 211 662 -5819 4 1339 2209 72 0 0 chr3 98867322 98867600 -60732183 + IAPEz-int LTR ERVK 1359 1636 -4845 4 1339 6014 53 3 19 chr3 98867599 98868355 -60731428 + IAPEz-int LTR ERVK 5736 6479 -2 4 1339 3843 36 63 0 chr3 98868357 98868804 -60730979 + IAPLTR2_Mm LTR ERVK 1 475 0 4 1339 412 129 0 0 chr3 98868805 98868875 -60730908 + L1Md_F2 LINE L1 6513 6582 0 4 1339 32 26 0 0 chr3 98868946 98868985 -60730798 + AT_rich Low_complexity Low_complexity 1 39 0 4 1339 594 25 13 0 chr3 98868989 98869068 -60730715 + L1Md_F2 LINE L1 6502 6581 -1 4 1339 606 264 58 10 chr3 98869142 98869349 -60730434 - L1_Mur3 LINE L1 -2423 3717 3501 4 1339 495 286 31 10 chr3 98869344 98869538 -60730245 - L1_Rod LINE L1 -3968 1879 1682 4 1339 1585 197 19 165 chr3 98869539 98869970 -60729813 + ORR1D1 LTR MaLR 1 368 -6 4 1339 399 231 88 7 chr3 98870000 98870148 -60729635 - L1_Mur3 LINE L1 -4233 1647 1488 4 1339 218 105 26 0 chr3 98870148 98870186 -60729597 + (TCC)n Simple_repeat Simple_repeat 3 41 0 4 1339 443 306 28 41 chr3 98870194 98870514 -60729269 - L1_Rod LINE L1 -4322 1525 1210 4 1339 267 31 0 0 chr3 98870805 98870837 -60728946 + (CAGA)n Simple_repeat Simple_repeat 2 33 0 4 1339 705 219 29 0 chr3 98870837 98870965 -60728818 - B1_Mur1 SINE Alu -15 134 3 4 1339 19900 112 47 12 chr3 98872419 98875386 -60724397 + L1_Mus3 LINE L1 2711 5785 -98 4 1339 351 0 0 0 chr3 98875386 98875425 -60724358 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 4 1339 19900 99 21 14 chr3 98875425 98876257 -60723526 + L1_Mus3 LINE L1 5786 6638 0 4 1339 22 35 0 0 chr3 98876378 98876407 -60723376 + AT_rich Low_complexity Low_complexity 1 29 0 4 1339 613 149 11 0 chr3 98876409 98876503 -60723280 + B1_Mus2 SINE Alu 1 95 -52 4 1339 300 367 42 21 chr3 98876551 98876743 -60723040 + L1M5 LINE L1 5484 5679 -445 4 1339 837 206 0 0 chr3 98876871 98877017 -60722766 + B1_Mur2 SINE Alu 3 148 -1 4 1339 240 170 0 0 chr3 98877508 98877561 -60722222 + GA-rich Low_complexity Low_complexity 1 53 0 4 1339 224 341 0 11 chr3 98877722 98877760 -60722023 + polypyrimidine Low_complexity Low_complexity 54 91 0 4 1339 982 102 6 22 chr3 98877760 98877940 -60721843 + (TTCC)n Simple_repeat Simple_repeat 2 178 0 4 1339 224 341 0 11 chr3 98877940 98877993 -60721790 + polypyrimidine Low_complexity Low_complexity 1 53 0 4 1339 327 143 0 49 chr3 98877993 98878074 -60721709 + T-rich Low_complexity Low_complexity 2 78 0 4 1339 578 303 45 25 chr3 98878153 98878353 -60721430 - Lx8 LINE L1 -475 6998 6795 4 1339 1795 284 60 41 chr3 98878355 98879354 -60720429 - Lx8 LINE L1 -6385 1343 17 4 1339 439 281 34 48 chr3 98880305 98880451 -60719332 - RSINE1 SINE B4 -19 146 3 4 1339 13816 20 0 0 chr3 98880891 98882458 -60717325 + L1Md_A LINE L1 4020 5586 -297 4 1339 9064 31 0 0 chr3 98882459 98883454 -60716329 + L1Md_A LINE L1 5588 6582 0 4 1339 1028 242 23 19 chr3 98883459 98883716 -60716067 + RMER6B LTR ERVK 204 461 0 4 1339 216 373 38 45 chr3 98883721 98883853 -60715930 - MIRc SINE MIR -115 153 23 4 1339 2597 51 6 0 chr3 98883931 98884243 -60715540 + L1Md_T LINE L1 6269 6582 0 4 1339 289 332 65 51 chr3 98884941 98885157 -60714626 + MER121 Unknown Unknown 94 312 -100 4 1339 2193 160 67 32 chr3 98885563 98885964 -60713819 - MTC LTR MaLR 0 421 7 4 1339 4670 175 56 69 chr3 98885964 98886038 -60713745 + RMER19B LTR ERVK 1 54 -848 4 1339 441 0 0 0 chr3 98886038 98886087 -60713696 + (TTG)n Simple_repeat Simple_repeat 2 50 0 4 1339 4670 175 56 69 chr3 98886087 98886926 -60712857 + RMER19B LTR ERVK 55 902 0 4 1339 2565 242 21 33 chr3 98887313 98888068 -60711715 + L1Md_F2 LINE L1 509 1210 -5447 4 1339 6168 82 2 22 chr3 98888071 98888943 -60710840 + L1Md_Gf LINE L1 288 1142 -5380 4 1339 13877 169 279 27 chr3 98888909 98889892 -60709891 + L1Md_F2 LINE L1 1203 2112 -3774 4 1339 1686 57 0 0 chr3 98889892 98890084 -60709699 - B2_Mm1t SINE B2 0 193 2 4 1339 17133 81 39 4 chr3 98890084 98892601 -60707182 + L1Md_F2 LINE L1 2113 5589 -297 4 1339 8603 46 1 3 chr3 98892601 98893586 -60706197 + L1Md_F2 LINE L1 5587 6569 -13 4 1339 6631 78 11 15 chr3 98893600 98894456 -60705327 + L1_Mus3 LINE L1 5781 6632 -6 5 1339 235 323 116 19 chr3 98895013 98895281 -60704502 + L1M5 LINE L1 4741 5034 -1112 5 1339 383 322 137 13 chr3 98895291 98895524 -60704259 + L1MEc LINE L1 58 319 -6081 5 1339 4201 229 82 44 chr3 98895919 98896969 -60702814 - Lx6 LINE L1 -11 7449 6360 5 1339 909 151 70 35 chr3 98896991 98897190 -60702593 - L1_Mur3 LINE L1 -1413 4467 4262 5 1339 2470 56 7 7 chr3 98897191 98897495 -60702288 + L1_Mus1 LINE L1 6261 6564 -3 5 1339 4670 98 131 6 chr3 98897580 98898531 -60701252 - L1_Mus3 LINE L1 -1 6637 5506 5 1339 784 173 0 0 chr3 98898545 98898678 -60701105 - L1_Mur3 LINE L1 -1611 4269 4137 5 1339 1070 205 107 27 chr3 98898679 98898940 -60700843 - RLTR28 LTR ERVL 0 524 243 5 1339 1821 5 0 0 chr3 98898945 98899143 -60700640 - L1Md_T LINE L1 0 6582 6385 5 1339 14971 147 171 19 chr3 98899159 98899434 -60700349 + L1_Mur2 LINE L1 1750 2051 -3826 5 1339 192 77 0 0 chr3 98899434 98899460 -60700323 + (CA)n Simple_repeat Simple_repeat 1 26 0 5 1339 14971 147 171 19 chr3 98899460 98902234 -60697549 + L1_Mur2 LINE L1 2052 5293 -584 5 1339 1727 116 39 0 chr3 98902234 98902492 -60697291 + L1_Mus3 LINE L1 6371 6638 0 5 1339 14971 147 171 19 chr3 98902492 98902693 -60697090 + L1_Mur2 LINE L1 5294 5494 -383 5 1339 2657 137 10 0 chr3 98902689 98903092 -60696691 + Lx4B LINE L1 6247 6653 -405 5 1339 5356 151 30 18 chr3 98903331 98904221 -60695562 + Lx2B LINE L1 6100 7000 0 5 1339 270 0 0 0 chr3 98904291 98904321 -60695462 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 5 1339 26 30 0 0 chr3 98905092 98905125 -60694658 + AT_rich Low_complexity Low_complexity 1 33 0 5 1339 232 218 12 49 chr3 98905162 98905244 -60694539 + (TATATG)n Simple_repeat Simple_repeat 2 80 0 5 1339 429 20 0 0 chr3 98905592 98905642 -60694141 + (CA)n Simple_repeat Simple_repeat 1 50 0 5 1339 1453 57 0 0 chr3 98905752 98905927 -60693856 - L1_Mus1 LINE L1 0 6567 6393 5 1339 235 346 0 36 chr3 98906237 98906348 -60693435 + L1M5 LINE L1 4851 4957 -1189 5 1339 539 227 9 18 chr3 98906435 98906547 -60693236 + B1F SINE Alu 38 148 -1 5 1339 1128 109 0 0 chr3 98906596 98906819 -60692964 + (CA)n Simple_repeat Simple_repeat 1 223 0 5 1339 342 224 48 58 chr3 98906858 98906962 -60692821 + MTD LTR MaLR 7 109 -310 5 1339 24 0 0 0 chr3 98906999 98907023 -60692760 + AT_rich Low_complexity Low_complexity 1 24 0 5 1339 515 147 88 0 chr3 98907246 98907348 -60692435 - Lx7 LINE L1 -1 7695 7585 5 1339 287 279 25 0 chr3 98907349 98907428 -60692355 + CT-rich Low_complexity Low_complexity 2 82 0 5 1339 731 231 59 0 chr3 98907533 98907719 -60692064 + MTD LTR MaLR 223 419 0 5 1339 477 316 72 21 chr3 98908848 98909042 -60690741 - RMER20B LTR ERVK -317 310 107 5 1339 215 256 0 0 chr3 98909184 98909227 -60690556 + (TCTA)n Simple_repeat Simple_repeat 2 44 0 5 1339 2117 129 37 16 chr3 98909357 98909679 -60690104 + ORR1A4 LTR MaLR 1 329 0 5 1339 1093 165 119 5 chr3 98910795 98910996 -60688787 - URR1B DNA MER1_type -1 224 1 5 1339 845 280 28 5 chr3 98911093 98911305 -60688478 + ID_B1 SINE B4 6 222 -2 5 1339 620 302 6 0 chr3 98911435 98911594 -60688189 + RSINE1 SINE B4 2 161 -4 5 1339 7517 182 45 38 chr3 98911604 98914162 -60685621 + Lx5 LINE L1 4463 7033 -17 5 1339 21 0 0 0 chr3 98914532 98914553 -60685230 + AT_rich Low_complexity Low_complexity 1 21 0 5 1339 192 152 0 0 chr3 98914829 98914862 -60684921 + GA-rich Low_complexity Low_complexity 2 34 0 5 1339 189 0 0 0 chr3 98915174 98915195 -60684588 + (GA)n Simple_repeat Simple_repeat 1 21 0 5 1339 572 259 122 0 chr3 98915929 98916060 -60683723 + RSINE1 SINE B4 8 154 -11 5 1339 201 129 0 0 chr3 98916079 98916110 -60683673 + (CA)n Simple_repeat Simple_repeat 2 32 0 5 1339 26 30 0 0 chr3 98916111 98916144 -60683639 + AT_rich Low_complexity Low_complexity 1 33 0 5 1339 699 265 148 42 chr3 98916375 98916686 -60683097 + Arthur1B DNA Tip100 267 610 -615 5 1339 513 313 65 27 chr3 98916699 98917030 -60682753 + Arthur1B DNA Tip100 760 1105 -120 5 1339 294 341 24 0 chr3 98917212 98917335 -60682448 + Arthur1B DNA Tip100 1100 1225 0 5 1339 274 250 129 45 chr3 98919727 98919882 -60679901 + L1MEc LINE L1 297 464 -5936 5 1339 256 297 75 17 chr3 98920099 98920219 -60679564 + L1MEc LINE L1 780 906 -5494 5 1339 225 262 0 0 chr3 98920293 98920335 -60679448 + ZP3AR Satellite Satellite 38 79 -133 5 1339 248 291 18 0 chr3 98920298 98920353 -60679430 + ID4 SINE ID 1 56 -27 5 1339 776 266 26 16 chr3 98920367 98920558 -60679225 - Lx9 LINE L1 -334 7310 7118 5 1339 505 159 9 9 chr3 98920607 98920715 -60679068 + Lx9 LINE L1 7537 7644 0 5 1339 396 301 157 25 chr3 98920913 98921277 -60678506 + L1MEc LINE L1 1026 1437 -4963 5 1339 1337 276 67 33 chr3 98921530 98921568 -60678215 + L1MA7 LINE L1 5453 5487 -804 5 1339 1642 48 0 0 chr3 98921568 98921754 -60678029 + B2_Mm1a SINE B2 2 187 -6 5 1339 1337 276 67 33 chr3 98921754 98922224 -60677559 + L1MA7 LINE L1 5488 5978 -313 5 1339 2733 156 53 23 chr3 98922236 98922710 -60677073 + RLTR20C LTR ERVK 47 534 0 5 1339 677 314 75 5 chr3 98922962 98923333 -60676450 + L1MEc LINE L1 4813 5209 -1110 5 1339 395 362 54 9 chr3 98923469 98923784 -60675999 - L1MC4 LINE L1 -292 7750 7422 5 1339 758 293 73 13 chr3 98924195 98924479 -60675304 + Lx7 LINE L1 7017 7318 -378 5 1339 534 16 0 0 chr3 98924479 98924542 -60675241 + (TG)n Simple_repeat Simple_repeat 2 64 0 5 1339 758 293 73 13 chr3 98924542 98924558 -60675225 + Lx7 LINE L1 7319 7335 -361 5 1339 3449 65 19 4 chr3 98924725 98925188 -60674595 - RMER16 LTR ERVK 0 533 64 5 1339 9479 91 10 17 chr3 98925208 98926534 -60673249 - RMER16-int LTR ERVK -4 5402 4087 5 1339 3372 233 171 6 chr3 98926572 98927443 -60672340 - RMER1A Other Other -15 1015 1 5 1339 1419 224 72 135 chr3 98927454 98927961 -60671822 - RMER1B Other Other -549 517 15 5 1339 642 277 27 7 chr3 98928506 98928655 -60671128 - RSINE1 SINE B4 -11 154 3 5 1339 372 319 97 42 chr3 98928751 98929059 -60670724 - L1MC4 LINE L1 -1843 6039 5715 5 1339 25 0 0 0 chr3 98929059 98929084 -60670699 + AT_rich Low_complexity Low_complexity 1 25 0 5 1339 653 283 153 23 chr3 98929158 98929502 -60670281 - MLT1B LTR MaLR 0 390 3 5 1339 312 25 25 0 chr3 98929848 98929888 -60669895 + HAL1-3A_ME LINE L1 1977 2017 -841 5 1339 258 352 46 9 chr3 98930764 98930873 -60668910 - PB1D9 SINE Alu -5 115 3 5 1339 1297 48 0 0 chr3 98930949 98931096 -60668687 + B1_Mus2 SINE Alu 1 147 0 5 1339 26 0 0 0 chr3 98931352 98931378 -60668405 + AT_rich Low_complexity Low_complexity 1 26 0 5 1339 238 231 0 19 chr3 98931419 98931472 -60668311 + ID4 SINE ID 2 53 -30 5 1339 1230 184 9 9 chr3 98931844 98932064 -60667719 - URR1B DNA MER1_type -1 224 5 5 1339 483 245 106 26 chr3 98932263 98932414 -60667369 - RSINE1 SINE B4 0 165 3 5 1339 475 176 6 57 chr3 98932475 98932650 -60667133 + CT-rich Low_complexity Low_complexity 3 168 0 5 1339 243 259 0 0 chr3 98932661 98932715 -60667068 + CT-rich Low_complexity Low_complexity 4 57 0 5 1339 783 264 0 0 chr3 98934981 98935140 -60664643 - B3A SINE B2 -38 160 2 5 1339 369 0 0 0 chr3 98935168 98935209 -60664574 + (CA)n Simple_repeat Simple_repeat 2 42 0 5 1339 1184 56 7 0 chr3 98935438 98935580 -60664203 + B1_Mus2 SINE Alu 5 147 0 5 1339 449 272 1 13 chr3 98935630 98935746 -60664037 + PB1D7 SINE Alu 1 115 -5 5 1339 216 269 32 87 chr3 98936132 98936258 -60663525 + L2c LINE L2 3269 3387 0 5 1339 686 223 46 0 chr3 98936386 98936516 -60663267 + B1_Mus2 SINE Alu 3 138 -9 5 1339 198 0 0 0 chr3 98936525 98936547 -60663236 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 5 1339 696 220 0 47 chr3 98936552 98936700 -60663083 + B3 SINE B2 26 166 -50 5 1339 2972 166 45 26 chr3 98936971 98937546 -60662237 - RMER13B LTR ERVK 0 908 323 5 1339 201 211 0 0 chr3 98937765 98937817 -60661966 + (TTTA)n Simple_repeat Simple_repeat 1 52 0 5 1339 188 34 0 33 chr3 98938290 98938320 -60661463 + (CA)n Simple_repeat Simple_repeat 2 30 0 5 1339 1266 43 0 0 chr3 98938698 98938837 -60660946 + B1_Mm SINE Alu 1 139 -8 5 1339 246 32 0 0 chr3 98938847 98938878 -60660905 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 5 1339 416 228 0 12 chr3 98939396 98939476 -60660307 + URR1B DNA MER1_type 1 79 -146 5 1339 995 143 36 0 chr3 98939838 98939978 -60659805 - B1_Mur4 SINE Alu -1 149 5 5 1339 225 0 0 0 chr3 98940478 98940503 -60659280 + (A)n Simple_repeat Simple_repeat 1 25 0 5 1339 270 81 0 0 chr3 98940686 98940723 -60659060 + (TG)n Simple_repeat Simple_repeat 1 37 0 5 1339 2353 182 127 98 chr3 98942372 98943146 -60656637 - RLTR40 LTR ERVK -21 796 1 5 1339 339 288 57 41 chr3 98946564 98946687 -60653096 + PB1 SINE Alu 1 125 -2 5 1339 1187 164 30 76 chr3 98948118 98948230 -60651553 + URR1A DNA MER1_type 1 106 -120 5 1339 1286 54 0 0 chr3 98948230 98948377 -60651406 - B1_Mus2 SINE Alu 0 147 1 5 1339 1187 164 30 76 chr3 98948377 98948501 -60651282 + URR1A DNA MER1_type 107 226 0 5 1339 337 315 128 25 chr3 98948574 98948971 -60650812 - L1MC4a LINE L1 -15 7867 7430 5 1339 219 36 0 0 chr3 98949637 98949665 -60650118 + (TG)n Simple_repeat Simple_repeat 2 29 0 5 1339 241 310 13 27 chr3 98949670 98949819 -60649964 + (TATATG)n Simple_repeat Simple_repeat 6 152 0 5 1339 223 357 45 0 chr3 98949883 98949995 -60649788 - MIRb SINE MIR -103 165 49 5 1339 335 323 163 20 chr3 98951652 98951848 -60647935 - MIR SINE MIR -5 257 34 5 1339 339 25 0 0 chr3 98952839 98952879 -60646904 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 5 1339 198 323 32 0 chr3 98953167 98953229 -60646554 + MIRb SINE MIR 126 189 -79 5 1339 328 283 98 0 chr3 98953631 98953723 -60646060 - PB1D9 SINE Alu -19 101 1 5 1339 270 0 0 0 chr3 98953795 98953825 -60645958 + (A)n Simple_repeat Simple_repeat 1 30 0 5 1339 1151 68 12 6 chr3 98954830 98954993 -60644790 - L1_Mus3 LINE L1 -4 6634 6471 5 1339 669 284 28 14 chr3 98955377 98955590 -60644193 - MLT1A LTR MaLR 0 408 186 5 1339 482 264 50 0 chr3 98956202 98956323 -60643460 + B4A SINE B4 45 171 -121 5 1339 313 227 122 10 chr3 98956247 98956345 -60643438 + PB1D9 SINE Alu 6 114 -6 5 1339 6100 59 0 1 chr3 98956354 98957212 -60642571 + L1_Mus1 LINE L1 5460 6313 -254 5 1339 1891 106 53 3 chr3 98957212 98957515 -60642268 + BGLII_B LTR ERVK 120 437 -4 6 1339 214 179 36 0 chr3 98957518 98957574 -60642209 + GA-rich Low_complexity Low_complexity 4 61 0 6 1339 193 338 67 13 chr3 98958196 98958271 -60641512 + MIRm SINE MIR 5 83 -193 6 1339 286 281 15 76 chr3 98958409 98958540 -60641243 + MIR SINE MIR 116 238 -24 6 1339 898 237 33 28 chr3 98959106 98959291 -60640492 + B3 SINE B2 3 190 -26 6 167 2365 112 19 0 chr3 98959291 98959611 -60640172 + ORR1A3 LTR MaLR 1 326 0 6 1340 898 237 33 28 chr3 98959611 98959638 -60640145 + B3 SINE B2 191 216 0 6 1340 597 332 114 46 chr3 98959678 98960221 -60639562 - L2 LINE L2 -553 2866 2287 6 1340 375 229 72 0 chr3 98960277 98960360 -60639423 + RSINE1 SINE B4 44 132 -33 6 1340 564 182 0 0 chr3 98960569 98960701 -60639082 + (CA)n Simple_repeat Simple_repeat 1 132 0 6 1340 222 91 0 0 chr3 98961629 98961662 -60638121 + (ATTG)n Simple_repeat Simple_repeat 4 36 0 6 1340 212 154 0 0 chr3 98961866 98961905 -60637878 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 6 1340 21 36 0 0 chr3 98962429 98962457 -60637326 + AT_rich Low_complexity Low_complexity 1 28 0 6 1340 349 222 45 18 chr3 98962457 98962567 -60637216 - Lx9 LINE L1 0 7644 7532 6 1340 569 270 40 125 chr3 98962598 98962822 -60636961 - B4A SINE B4 -66 226 22 6 1340 349 222 45 18 chr3 98963632 98963742 -60636041 - Lx9 LINE L1 0 7644 7532 6 1340 4563 120 181 17 chr3 98964105 98964988 -60634795 + RLTR25B LTR ERVK 1 1103 0 6 1340 234 269 0 0 chr3 98965022 98965089 -60634694 + T-rich Low_complexity Low_complexity 1 67 0 6 1340 2017 191 69 0 chr3 98965101 98965493 -60634290 + MTD LTR MaLR 1 419 0 6 1340 903 257 67 21 chr3 98965756 98966080 -60633703 - L1MC LINE L1 -726 5618 5278 6 1340 396 0 0 0 chr3 98966080 98966124 -60633659 + (TG)n Simple_repeat Simple_repeat 2 45 0 6 1340 634 300 143 18 chr3 98966184 98966248 -60633535 - L1MD LINE L1 -837 5309 5242 6 1340 757 255 0 0 chr3 98966248 98966397 -60633386 - RSINE1 SINE B4 -14 151 3 6 1340 1439 229 141 12 chr3 98966397 98966878 -60632905 - L1MC LINE L1 -905 5241 4699 6 1340 663 265 132 18 chr3 98967453 98967780 -60632003 - L1MC LINE L1 -1424 4722 4359 6 1340 317 315 120 69 chr3 98967806 98968082 -60631701 - B4 SINE B4 -2 290 1 6 1340 420 278 106 69 chr3 98968090 98968385 -60631398 - L1MC LINE L1 -1774 4372 4069 6 1340 1268 259 75 73 chr3 98968737 98968925 -60630858 - Lx5 LINE L1 -1 7049 6849 6 1340 1250 74 0 0 chr3 98968925 98969073 -60630710 + B1_Mus1 SINE Alu 1 148 0 6 1340 1268 259 75 73 chr3 98969073 98969350 -60630433 - Lx5 LINE L1 -202 6848 6583 6 1340 229 242 32 0 chr3 98969389 98969451 -60630332 - L1MC LINE L1 -2932 3214 3151 6 1340 247 338 0 70 chr3 98969471 98969557 -60630226 - ID4_ SINE ID -1 82 3 6 1340 266 284 75 0 chr3 98969961 98970028 -60629755 - B1F2 SINE Alu -77 72 1 6 1340 4722 2 0 0 chr3 98970927 98971415 -60628368 - L1Md_A LINE L1 0 6582 6095 6 1340 3225 3 0 0 chr3 98971415 98971765 -60628018 + L1Md_A LINE L1 5758 6107 -475 6 1340 367 314 54 60 chr3 98972360 98972509 -60627274 + B1F SINE Alu 1 148 -1 6 1340 772 220 0 7 chr3 98972669 98972811 -60626972 + B1F1 SINE Alu 1 141 -8 6 1340 1191 176 54 0 chr3 98973218 98973422 -60626361 - B3 SINE B2 0 216 2 6 1340 1083 39 59 94 chr3 98973936 98974106 -60625677 - L1Md_F3 LINE L1 0 6584 6421 6 1340 232 362 58 44 chr3 98974719 98974915 -60624868 - L2c LINE L2 -243 3144 2948 6 1340 351 0 0 0 chr3 98976649 98976688 -60623095 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 6 1340 284 211 0 14 chr3 98976842 98976914 -60622869 + (CATATA)n Simple_repeat Simple_repeat 2 72 0 6 1340 219 69 0 0 chr3 98976914 98976943 -60622840 + (TG)n Simple_repeat Simple_repeat 2 30 0 6 1340 281 333 102 8 chr3 98977631 98977749 -60622034 - MLT1C LTR MaLR -326 141 13 6 1340 726 126 8 8 chr3 98980484 98980604 -60619179 - B1_Mus2 SINE Alu -1 146 27 6 1340 256 60 28 56 chr3 98980704 98980775 -60619008 + (TTTG)n Simple_repeat Simple_repeat 4 72 0 6 1340 1206 34 14 7 chr3 98980775 98980921 -60618862 - B1_Mm SINE Alu 0 147 1 6 1340 468 0 0 0 chr3 98981427 98981479 -60618304 + (TG)n Simple_repeat Simple_repeat 2 53 0 6 1340 411 274 57 0 chr3 98981554 98981678 -60618105 + MER5B DNA MER1_type 16 146 -32 6 1340 469 259 179 31 chr3 98981753 98982069 -60617714 - MTE2a LTR MaLR 0 419 44 6 1340 268 337 52 99 chr3 98982108 98982299 -60617484 - MER5A DNA MER1_type -7 182 1 6 1340 390 329 93 59 chr3 98982528 98982764 -60617019 + Tigger16b DNA Tigger 69 312 -25 6 1340 269 360 43 47 chr3 98982848 98983028 -60616755 - L2c LINE L2 -7 3419 3224 6 1340 372 167 0 0 chr3 98983080 98983152 -60616631 + (TG)n Simple_repeat Simple_repeat 1 72 0 6 1340 189 0 0 0 chr3 98983419 98983440 -60616343 + (TA)n Simple_repeat Simple_repeat 1 21 0 6 1340 204 318 9 0 chr3 98983453 98983560 -60616223 + (TA)n Simple_repeat Simple_repeat 2 109 0 6 1340 233 319 0 11 chr3 98984044 98984136 -60615647 + (TATG)n Simple_repeat Simple_repeat 2 92 0 6 1340 360 111 0 0 chr3 98984136 98984190 -60615593 + (TAGA)n Simple_repeat Simple_repeat 4 57 0 6 1340 234 0 0 0 chr3 98984654 98984680 -60615103 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 6 1340 347 254 23 29 chr3 98985299 98985403 -60614380 + Lx5 LINE L1 5793 5899 -1151 6 1340 279 0 0 0 chr3 98985406 98985437 -60614346 + (TG)n Simple_repeat Simple_repeat 2 32 0 6 1340 409 297 51 64 chr3 98985501 98985796 -60613987 - RLTR15 LTR ERVK -20 339 49 6 1340 232 98 0 0 chr3 98985813 98985854 -60613929 + Lx2 LINE L1 6957 6997 0 6 1340 271 157 39 0 chr3 98985965 98986016 -60613767 - RLTR12A LTR ERVK -500 68 16 6 1340 22 35 0 0 chr3 98986287 98986316 -60613467 + AT_rich Low_complexity Low_complexity 1 29 0 6 1340 476 246 3 53 chr3 98986528 98986649 -60613134 + RSINE1 SINE B4 1 116 -49 6 1340 303 28 0 0 chr3 98986680 98986716 -60613067 + (GGA)n Simple_repeat Simple_repeat 1 36 0 6 1340 1197 75 7 0 chr3 98986809 98986955 -60612828 - B1_Mus2 SINE Alu 0 147 1 6 1340 265 304 36 0 chr3 98988199 98988311 -60611472 + CT-rich Low_complexity Low_complexity 3 118 0 6 1340 333 331 43 43 chr3 98988819 98988980 -60610803 + L1M5 LINE L1 4865 5025 -1121 6 1340 204 225 0 0 chr3 98989005 98989045 -60610738 + (TATATG)n Simple_repeat Simple_repeat 6 45 0 6 1340 1270 192 90 7 chr3 98989808 98990107 -60609676 - ORR1D2 LTR MaLR -5 365 42 6 1340 399 287 69 19 chr3 98990149 98990309 -60609474 + MIRb SINE MIR 55 222 -46 6 1340 279 0 0 0 chr3 98990514 98990545 -60609238 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 6 1340 1191 66 0 0 chr3 98990545 98990682 -60609101 - B1_Mus1 SINE Alu -9 139 3 6 1340 291 276 0 0 chr3 98992467 98992525 -60607258 + ID4_ SINE ID 15 72 -11 6 1340 785 211 137 0 chr3 98992866 98993056 -60606727 - B3 SINE B2 0 216 1 6 1340 523 279 89 54 chr3 98993216 98993530 -60606253 - Kanga2_a DNA Tc2 -303 585 261 6 1340 1184 120 15 35 chr3 98994069 98994268 -60605515 + B2_Mm2 SINE B2 1 195 0 6 1340 347 299 0 27 chr3 98994599 98994621 -60605162 - B4 SINE B4 -184 108 88 6 1340 375 60 0 0 chr3 98994621 98994671 -60605112 + (TG)n Simple_repeat Simple_repeat 2 51 0 6 1340 445 204 22 11 chr3 98994671 98994760 -60605023 - RSINE1 SINE B4 -75 90 1 6 1340 671 298 107 63 chr3 98994760 98995023 -60604760 - L1MA8 LINE L1 -220 6071 5791 6 1340 3048 43 3 3 chr3 98995023 98995369 -60604414 - ORR1A1 LTR MaLR 0 346 1 6 1340 671 298 107 63 chr3 98995369 98995706 -60604077 - L1MA8 LINE L1 -501 5790 5445 6 1340 202 282 45 72 chr3 98995835 98995946 -60603837 - L2b LINE L2 -31 3344 3237 6 1340 24 32 0 0 chr3 98996175 98996206 -60603577 + AT_rich Low_complexity Low_complexity 1 31 0 6 1340 21 0 0 0 chr3 98996340 98996361 -60603422 + AT_rich Low_complexity Low_complexity 1 21 0 6 1340 396 200 35 115 chr3 98998808 98998921 -60600862 - RSINE1 SINE B4 -19 146 43 6 1340 227 268 0 0 chr3 98999145 98999216 -60600567 + T-rich Low_complexity Low_complexity 1 71 0 6 1340 405 0 0 0 chr3 98999337 98999382 -60600401 + (TG)n Simple_repeat Simple_repeat 2 46 0 6 1340 416 313 42 30 chr3 98999383 98999551 -60600232 + MTEb LTR MaLR 90 259 -120 6 1340 2045 118 19 26 chr3 98999656 99000000 -60599783 - RLTR13C2 LTR ERVK 0 855 467 6 1340 3738 37 15 17 chr3 99000001 99000473 -60599310 - RLTR13C2 LTR ERVK -337 471 1 1 1340 471 204 226 8 chr3 99000475 99000608 -60599175 + MTEb LTR MaLR 213 374 -5 2 1340 264 264 207 25 chr3 99000697 99000895 -60598888 - Charlie1a DNA MER1_type -594 861 628 3 1340 828 129 43 14 chr3 99001036 99001177 -60598606 - B1_Mus1 SINE Alu -3 145 1 4 1340 512 110 154 0 chr3 99001306 99001397 -60598386 - B2_Mm1t SINE B2 -7 186 82 5 1340 23 0 0 0 chr3 99001506 99001529 -60598254 + AT_rich Low_complexity Low_complexity 1 23 0 6 1340 613 75 0 0 chr3 99001529 99001609 -60598174 - B2_Mm2 SINE B2 -114 81 2 7 1340 315 295 138 26 chr3 99001611 99001806 -60597977 - L1M4c LINE L1 -3937 2447 2231 8 1340 225 382 43 35 chr3 99001808 99001949 -60597834 + MLT1I LTR MaLR 147 288 -123 9 1340 21 0 0 0 chr3 99001968 99001989 -60597794 + AT_rich Low_complexity Low_complexity 1 21 0 1 1340 22 56 0 0 chr3 99002644 99002680 -60597103 + AT_rich Low_complexity Low_complexity 1 36 0 1 1340 549 291 147 20 chr3 99002782 99003034 -60596749 + B4A SINE B4 1 284 -8 1 1340 492 122 0 0 chr3 99003042 99003124 -60596659 + (CA)n Simple_repeat Simple_repeat 1 82 0 1 1340 776 199 138 11 chr3 99003479 99003667 -60596116 - B3 SINE B2 -4 212 1 1 1340 621 195 0 0 chr3 99003989 99004102 -60595681 - PB1D9 SINE Alu -6 114 2 1 1340 1026 285 27 85 chr3 99004157 99004266 -60595517 - MTEa LTR MaLR 0 379 277 1 1340 3408 71 38 11 chr3 99004266 99004735 -60595048 - RLTR45 LTR ERVK 0 482 1 1 1340 1026 285 27 85 chr3 99004735 99005027 -60594756 - MTEa LTR MaLR -103 276 1 1 1340 1162 191 143 12 chr3 99005253 99005553 -60594230 - ORR1D1 LTR MaLR 0 374 3 1 1340 301 269 50 16 chr3 99005686 99005807 -60593976 - L2a LINE L2 -344 3082 2958 1 1340 334 355 51 32 chr3 99005867 99006024 -60593759 - MIR SINE MIR -84 178 19 2 1340 337 196 0 0 chr3 99006100 99006156 -60593627 + 7SK RNA RNA 185 240 -91 2 1340 1014 136 7 0 chr3 99007986 99008133 -60591650 + B1_Mus1 SINE Alu 1 148 0 2 1340 249 192 135 0 chr3 99009332 99009344 -60590439 - ID_B1 SINE B4 -73 151 93 2 1340 275 125 0 0 chr3 99009344 99009384 -60590399 - B1F1 SINE Alu -98 51 12 2 1340 235 366 82 67 chr3 99009522 99009730 -60590053 - MIR SINE MIR -20 242 32 2 1340 2222 91 16 3 chr3 99009803 99010124 -60589659 + L1_Mus3 LINE L1 6314 6638 0 2 1340 512 78 0 25 chr3 99010128 99010207 -60589576 + (GAAA)n Simple_repeat Simple_repeat 4 80 0 2 1340 427 107 71 0 chr3 99010251 99010335 -60589448 + GA-rich Low_complexity Low_complexity 4 93 0 2 1340 248 284 24 12 chr3 99010442 99010524 -60589259 - ID4_ SINE ID 0 83 1 2 1340 303 319 47 60 chr3 99010525 99010675 -60589108 - B1F1 SINE Alu 0 149 2 3 1340 498 284 167 16 chr3 99010781 99010967 -60588816 - Tigger7 DNA MER2_type -1961 530 317 3 1340 389 314 90 5 chr3 99011024 99011210 -60588573 - Tigger7 DNA MER2_type -2277 214 10 3 1340 414 0 0 0 chr3 99011277 99011323 -60588460 + (TG)n Simple_repeat Simple_repeat 2 47 0 3 1340 423 296 27 27 chr3 99012562 99012711 -60587072 + B1F SINE Alu 1 149 0 3 1340 263 308 13 13 chr3 99012714 99012793 -60586990 + ID4_ SINE ID 2 80 -3 3 1340 811 329 47 36 chr3 99012913 99013361 -60586422 + Lx9 LINE L1 7149 7601 -43 3 1340 216 310 20 0 chr3 99013596 99013674 -60586109 - MIRc SINE MIR -74 194 112 3 1340 35 83 0 0 chr3 99013728 99013812 -60585971 + AT_rich Low_complexity Low_complexity 1 84 0 3 1340 486 255 123 7 chr3 99013946 99014092 -60585691 + RSINE1 SINE B4 3 165 0 3 1340 311 308 93 76 chr3 99014252 99014477 -60585306 - ORR1E LTR MaLR -112 247 19 3 1340 705 127 0 36 chr3 99017273 99017412 -60582371 - L1Md_F2 LINE L1 0 6582 6449 4 1340 1734 16 0 0 chr3 99017637 99017830 -60581953 + B2_Mm1a SINE B2 1 193 0 4 1340 25 0 0 0 chr3 99018839 99018864 -60580919 + AT_rich Low_complexity Low_complexity 1 25 0 4 1340 928 140 74 23 chr3 99018868 99019043 -60580740 + B2_Mm2 SINE B2 2 185 -10 4 1340 1218 62 0 0 chr3 99019082 99019228 -60580555 + B1_Mus2 SINE Alu 2 147 0 4 1340 194 218 127 0 chr3 99019335 99019390 -60580393 - MIRc SINE MIR -124 144 83 4 1340 207 190 0 0 chr3 99019757 99019815 -60579968 + (TG)n Simple_repeat Simple_repeat 2 59 0 4 1340 221 237 49 33 chr3 99020046 99020107 -60579676 + RSINE1 SINE B4 1 62 -103 4 1340 647 256 32 0 chr3 99021240 99021396 -60578387 + RSINE1 SINE B4 5 165 0 4 1340 240 312 119 60 chr3 99021529 99021747 -60578036 - MIRb SINE MIR -13 255 25 4 1340 521 260 55 61 chr3 99022169 99022300 -60577483 + RSINE1 SINE B4 1 124 -41 5 1340 342 0 0 0 chr3 99022300 99022338 -60577445 + (CA)n Simple_repeat Simple_repeat 2 39 0 5 1340 521 260 55 61 chr3 99022338 99022370 -60577413 + RSINE1 SINE B4 125 162 -3 5 1340 458 236 84 20 chr3 99022552 99022695 -60577088 - RSINE1 SINE B4 0 165 14 5 1340 238 373 73 19 chr3 99022781 99022808 -60576975 - B3 SINE B2 0 216 1 5 1340 585 266 34 112 chr3 99022808 99022986 -60576797 - RSINE1 SINE B4 0 165 2 5 1340 227 228 88 0 chr3 99023291 99023348 -60576435 - MLT2B3 LTR ERVL 0 556 495 5 1340 1393 68 0 6 chr3 99023349 99023526 -60576257 + B2_Mm2 SINE B2 2 177 -18 5 1340 457 290 165 6 chr3 99023577 99023747 -60576036 + B3A SINE B2 1 197 -1 5 1340 788 292 91 126 chr3 99023746 99024197 -60575586 - MLT2B3 LTR ERVL -64 490 22 5 1340 598 231 85 0 chr3 99024269 99024399 -60575384 - B1_Mur2 SINE Alu -2 147 7 5 1340 303 228 25 25 chr3 99024327 99024408 -60575375 - MT2B LTR ERVL -361 240 160 5 1340 351 0 0 0 chr3 99024418 99024457 -60575326 + (TG)n Simple_repeat Simple_repeat 2 40 0 6 1340 448 298 51 23 chr3 99025250 99025425 -60574358 + MER5A DNA MER1_type 7 186 -3 6 1340 337 301 30 89 chr3 99025426 99025594 -60574189 - MIRb SINE MIR -56 212 55 6 1340 209 303 61 69 chr3 99025857 99025988 -60573795 - L4 LINE RTE -538 1491 1362 6 1340 210 320 98 30 chr3 99025998 99026130 -60573653 - MIRb SINE MIR -36 232 92 6 1340 510 33 17 0 chr3 99026982 99027042 -60572741 + L1Md_F3 LINE L1 5524 5584 -299 6 1340 8838 19 0 2 chr3 99027044 99028043 -60571740 + L1Md_F3 LINE L1 5587 6583 -1 6 1340 907 232 19 24 chr3 99028050 99028262 -60571521 - B3 SINE B2 -2 214 4 6 1340 1342 64 46 0 chr3 99029757 99029930 -60569853 - B2_Mm2 SINE B2 -14 181 1 6 1340 255 308 50 71 chr3 99030044 99030184 -60569599 + MLT1B LTR MaLR 7 143 -369 6 1340 677 218 214 39 chr3 99030177 99030436 -60569347 + MT2C_Mm LTR ERVL 6 285 -190 6 1340 980 98 35 0 chr3 99030427 99030570 -60569213 - MTC LTR MaLR -204 217 70 7 1340 459 0 0 0 chr3 99030570 99030621 -60569162 + (CA)n Simple_repeat Simple_repeat 2 52 0 7 1340 2674 249 146 7 chr3 99030636 99031129 -60568654 - Lx6 LINE L1 -41 7419 6897 7 1340 1216 72 0 16 chr3 99031129 99031312 -60568471 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 7 1340 2674 249 146 7 chr3 99031312 99031529 -60568254 - Lx6 LINE L1 -564 6896 6612 7 1340 507 130 29 107 chr3 99031534 99031637 -60568146 - MTD LTR MaLR -321 98 4 7 1340 183 243 0 136 chr3 99031753 99031834 -60567949 - MER5B DNA MER1_type -18 160 91 7 1340 336 340 89 36 chr3 99032026 99032194 -60567589 + MER5A DNA MER1_type 13 189 0 7 1340 21 0 0 0 chr3 99032210 99032231 -60567552 + AT_rich Low_complexity Low_complexity 1 21 0 7 1340 358 327 50 70 chr3 99033001 99033362 -60566421 + MTE2a LTR MaLR 6 367 -12 7 1340 329 274 60 60 chr3 99034558 99034725 -60565058 - L2a LINE L2 -6 3420 3254 7 1340 974 175 89 11 chr3 99034733 99034912 -60564871 + B3 SINE B2 2 194 -22 8 1340 227 83 67 0 chr3 99034912 99034972 -60564811 + (TA)n Simple_repeat Simple_repeat 2 65 0 8 1340 543 276 96 78 chr3 99034994 99035265 -60564518 + MLT1B LTR MaLR 113 388 -2 6 1340 207 69 0 0 chr3 99035278 99035307 -60564476 + (TAAAA)n Simple_repeat Simple_repeat 3 31 0 8 1340 3711 163 142 45 chr3 99035316 99036177 -60563606 + Lx7 LINE L1 6767 7692 -4 8 1340 211 311 73 40 chr3 99036236 99036360 -60563423 - L2a LINE L2 -320 3106 2979 8 1340 761 199 23 0 chr3 99036366 99036497 -60563286 - B1_Mur4 SINE Alu -15 135 2 8 1340 974 147 0 0 chr3 99036710 99036853 -60562930 + B1_Mur4 SINE Alu 2 144 -6 8 1340 573 112 246 27 chr3 99036882 99036992 -60562791 + B1_Mur4 SINE Alu 4 137 -13 8 1340 252 0 0 0 chr3 99036995 99037023 -60562760 + (TG)n Simple_repeat Simple_repeat 2 29 0 8 1340 180 0 0 0 chr3 99039685 99039705 -60560078 + (T)n Simple_repeat Simple_repeat 1 20 0 8 1340 284 266 38 0 chr3 99040887 99040966 -60558817 + L1MA8 LINE L1 6011 6092 -199 9 1340 354 23 0 0 chr3 99041226 99041269 -60558514 + (TG)n Simple_repeat Simple_repeat 2 44 0 9 1340 183 254 42 69 chr3 99042837 99042909 -60556874 - L4 LINE RTE -507 1522 1453 9 1340 243 0 0 0 chr3 99043109 99043136 -60556647 + (A)n Simple_repeat Simple_repeat 1 27 0 9 1340 477 0 0 0 chr3 99043703 99043756 -60556027 + (TG)n Simple_repeat Simple_repeat 2 54 0 9 1340 22 35 0 0 chr3 99044232 99044261 -60555522 + GC_rich Low_complexity Low_complexity 1 29 0 9 1340 212 301 72 78 chr3 99044469 99044649 -60555134 + MIRc SINE MIR 6 184 -84 9 1340 396 71 0 0 chr3 99045877 99045933 -60553850 + (T)n Simple_repeat Simple_repeat 1 56 0 9 1340 636 200 16 81 chr3 99047230 99047299 -60552484 + ID_B1 SINE B4 33 224 -67 9 1340 1058 52 7 0 chr3 99047299 99047434 -60552349 + B1_Mus1 SINE Alu 11 146 -2 9 1340 649 144 14 0 chr3 99048169 99048315 -60551468 + CT-rich Low_complexity Low_complexity 1 148 0 1 1340 518 279 145 27 chr3 99049314 99049535 -60550248 + MIR SINE MIR 13 259 -3 1 1340 786 97 0 0 chr3 99049559 99049672 -60550111 + (GA)n Simple_repeat Simple_repeat 2 114 0 1 1340 273 119 0 0 chr3 99051045 99051087 -60548696 + (T)n Simple_repeat Simple_repeat 1 42 0 1 1340 644 185 96 0 chr3 99051118 99051253 -60548530 - B1_Mur3 SINE Alu 0 149 2 1 1340 725 153 15 0 chr3 99051324 99051461 -60548322 + A-rich Low_complexity Low_complexity 3 141 0 1 1340 250 240 0 0 chr3 99053359 99053409 -60546374 - MIRc SINE MIR -136 132 83 1 1340 286 328 80 84 chr3 99054840 99054874 -60544909 - B3 SINE B2 -4 212 182 1 1340 243 0 0 0 chr3 99054874 99054901 -60544882 + (TG)n Simple_repeat Simple_repeat 1 27 0 1 1340 286 328 80 84 chr3 99054901 99054921 -60544862 - B3 SINE B2 -35 181 80 1 1340 508 319 28 28 chr3 99054921 99055066 -60544717 - RSINE1 SINE B4 -8 157 13 1 1340 286 328 80 84 chr3 99055066 99055079 -60544704 - B3 SINE B2 -35 79 1 1 1340 237 245 0 0 chr3 99056089 99056138 -60543645 + CT-rich Low_complexity Low_complexity 2 50 0 1 1340 261 0 0 0 chr3 99056838 99056867 -60542916 + (T)n Simple_repeat Simple_repeat 1 29 0 1 1340 212 228 0 50 chr3 99057363 99057423 -60542360 + GA-rich Low_complexity Low_complexity 3 59 0 1 1340 336 102 0 0 chr3 99057430 99057479 -60542304 + (A)n Simple_repeat Simple_repeat 1 49 0 1 1340 381 93 0 0 chr3 99063398 99063452 -60536331 + (TTTC)n Simple_repeat Simple_repeat 4 57 0 1 1340 390 42 0 0 chr3 99064160 99064208 -60535575 + (TG)n Simple_repeat Simple_repeat 2 49 0 1 1340 761 178 22 7 chr3 99064208 99064344 -60535439 - B1_Mus2 SINE Alu -9 138 1 1 1340 343 260 96 0 chr3 99064895 99064999 -60534784 + PB1D9 SINE Alu 7 120 0 1 1340 213 111 63 0 chr3 99064999 99065062 -60534721 + (CAAA)n Simple_repeat Simple_repeat 2 68 0 1 1340 543 128 0 0 chr3 99066284 99066370 -60533413 + (CAA)n Simple_repeat Simple_repeat 2 87 0 1 1340 264 59 0 0 chr3 99067873 99067907 -60531876 + (TTTC)n Simple_repeat Simple_repeat 3 36 0 1 1340 813 174 14 0 chr3 99068155 99068299 -60531484 + B1_Mm SINE Alu 2 147 0 1 1340 728 181 39 67 chr3 99068308 99068486 -60531297 - B2_Mm2 SINE B2 -22 173 1 1 1340 336 306 59 37 chr3 99068536 99068722 -60531061 + MIRc SINE MIR 27 207 -61 1 1340 564 171 0 0 chr3 99069372 99069512 -60530271 + (TG)n Simple_repeat Simple_repeat 2 141 0 1 1340 191 188 21 0 chr3 99069539 99069587 -60530196 + GA-rich Low_complexity Low_complexity 2 50 0 1 1340 642 253 114 11 chr3 99069622 99069636 -60530147 - B3 SINE B2 -13 203 190 1 1340 497 16 16 0 chr3 99069636 99069698 -60530085 + (TG)n Simple_repeat Simple_repeat 2 64 0 1 1340 642 253 114 11 chr3 99069698 99069867 -60529916 - B3 SINE B2 -27 189 2 1 1340 325 167 30 0 chr3 99069916 99069982 -60529801 - B3A SINE B2 -130 68 1 1 1340 185 0 0 39 chr3 99070201 99070227 -60529556 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 1 1340 899 118 42 0 chr3 99070230 99070374 -60529409 - B1_Mur4 SINE Alu 0 150 1 1 1340 396 0 0 0 chr3 99071933 99071977 -60527806 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 1340 377 247 0 45 chr3 99072173 99072262 -60527521 - BC1_Mm scRNA scRNA -66 86 2 1 1340 338 291 73 93 chr3 99072563 99072809 -60526974 + ORR1E LTR MaLR 73 313 -46 1 1340 253 372 109 15 chr3 99072852 99073054 -60526729 + MIRb SINE MIR 16 236 -32 1 1340 405 0 0 0 chr3 99073716 99073761 -60526022 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 1340 393 203 14 0 chr3 99073956 99074030 -60525753 + PB1D10 SINE Alu 43 117 0 1 1340 1024 96 120 6 chr3 99074092 99074250 -60525533 - B2_Mm2 SINE B2 -15 180 5 1 1340 638 209 13 0 chr3 99074639 99074792 -60524991 + CT-rich Low_complexity Low_complexity 2 156 0 1 1340 3318 123 33 12 chr3 99074813 99075322 -60524461 - Lx4B LINE L1 0 7058 6539 1 1340 1034 121 6 0 chr3 99077642 99077808 -60521975 + (TTTC)n Simple_repeat Simple_repeat 2 168 0 1 1340 234 163 0 0 chr3 99077831 99077880 -60521903 - Lx5 LINE L1 0 7050 7002 1 1340 234 191 0 0 chr3 99077916 99077958 -60521825 - Lx5 LINE L1 -142 6908 6867 1 1340 423 303 92 75 chr3 99080832 99081060 -60518723 + B4A SINE B4 5 236 -56 1 1340 186 71 0 0 chr3 99081065 99081093 -60518690 + (CA)n Simple_repeat Simple_repeat 2 29 0 1 1340 207 0 0 0 chr3 99081714 99081737 -60518046 + (T)n Simple_repeat Simple_repeat 1 23 0 1 1340 665 174 7 61 chr3 99082673 99082820 -60516963 + B1_Mm SINE Alu 7 145 -2 1 1340 232 73 0 24 chr3 99083982 99084024 -60515759 - Lx3_Mus LINE L1 -8 7001 6961 1 1340 767 293 66 30 chr3 99085029 99085300 -60514483 + B4A SINE B4 8 288 -4 1 1340 285 77 45 15 chr3 99085800 99085866 -60513917 + (TTTG)n Simple_repeat Simple_repeat 1 68 0 1 1340 467 315 33 65 chr3 99086949 99087224 -60512559 + MLT1A LTR MaLR 76 341 -33 1 1340 317 327 11 122 chr3 99087220 99087408 -60512375 - MLT1A LTR MaLR -127 247 81 1 1340 289 250 92 15 chr3 99087426 99087556 -60512227 - MER96B DNA hAT -213 204 65 1 1340 1319 66 0 57 chr3 99088016 99088208 -60511575 - B2_Mm2 SINE B2 -14 181 1 1 1340 378 0 0 0 chr3 99088517 99088559 -60511224 + (TTTA)n Simple_repeat Simple_repeat 3 44 0 1 1340 437 310 168 42 chr3 99088909 99089290 -60510493 - L1MC4 LINE L1 -412 7630 7202 1 1340 285 167 0 0 chr3 99089336 99089390 -60510393 + (TCTA)n Simple_repeat Simple_repeat 3 56 0 1 1340 335 121 17 0 chr3 99090366 99090424 -60509359 + (GGGA)n Simple_repeat Simple_repeat 3 61 0 1 1341 593 222 52 0 chr3 99090493 99090628 -60509155 + B1_Mur4 SINE Alu 1 142 -8 1 1341 747 22 0 0 chr3 99091172 99091261 -60508522 + (CA)n Simple_repeat Simple_repeat 2 90 0 1 1341 862 224 18 32 chr3 99092282 99092499 -60507284 + B3 SINE B2 3 216 0 1 1341 1036 207 5 5 chr3 99092517 99092721 -60507062 - B3 SINE B2 -9 207 4 1 1341 284 281 24 12 chr3 99092986 99093069 -60506714 - ID SINE ID -139 85 2 1 1341 22 0 0 0 chr3 99093345 99093367 -60506416 + AT_rich Low_complexity Low_complexity 1 22 0 1 1341 225 0 0 0 chr3 99094655 99094680 -60505103 + (T)n Simple_repeat Simple_repeat 1 25 0 1 1341 256 279 12 12 chr3 99095144 99095224 -60504559 - ID4 SINE ID -2 81 2 1 1341 546 254 43 107 chr3 99095232 99095466 -60504317 - ID_B1 SINE B4 -1 223 5 1 1341 321 261 80 18 chr3 99095474 99095587 -60504196 - PB1D7 SINE Alu 0 120 1 1 1341 281 368 44 0 chr3 99097109 99097291 -60502492 - MER117 DNA MER1_type -5 192 3 1 1341 204 152 43 21 chr3 99097924 99097971 -60501812 - MIRc SINE MIR -18 250 203 1 1341 441 0 0 0 chr3 99098399 99098448 -60501335 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 1341 249 164 197 0 chr3 99098813 99098874 -60500909 + PB1D10 SINE Alu 38 110 -7 1 1341 360 0 0 0 chr3 99099840 99099880 -60499903 + (TA)n Simple_repeat Simple_repeat 2 41 0 1 1341 364 194 16 24 chr3 99101068 99101195 -60498588 + CT-rich Low_complexity Low_complexity 4 129 0 1 1341 349 274 10 78 chr3 99101210 99101313 -60498470 - PB1D10 SINE Alu -21 96 1 1 1341 268 250 0 95 chr3 99101313 99101339 -60498444 - B4A SINE B4 -210 82 65 1 1341 435 68 0 0 chr3 99102830 99102889 -60496894 + (TCCA)n Simple_repeat Simple_repeat 3 61 0 1 1341 483 260 0 0 chr3 99107243 99107347 -60492436 + B1F SINE Alu 2 105 -44 1 1341 240 35 0 0 chr3 99107370 99107399 -60492384 + (TG)n Simple_repeat Simple_repeat 1 29 0 1 1341 416 58 0 0 chr3 99108032 99108084 -60491699 - L1_Mm LINE L1 -1189 4694 4643 1 1341 1075 105 0 34 chr3 99108084 99108261 -60491522 + L1Md_F2 LINE L1 6412 6582 0 1 1341 614 191 16 0 chr3 99108666 99108792 -60490991 - B3 SINE B2 0 216 89 1 1341 410 229 0 0 chr3 99108811 99108894 -60490889 - B1_Mur4 SINE Alu -66 84 2 1 1341 197 179 0 0 chr3 99109503 99109542 -60490241 + MIRb SINE MIR 216 254 -14 1 1341 218 29 59 0 chr3 99109721 99109755 -60490028 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 1 1341 1958 280 69 18 chr3 99110897 99111611 -60488172 + L1MA6 LINE L1 5328 6077 -223 1 1341 281 257 29 153 chr3 99111636 99111813 -60487970 + L1MA4 LINE L1 5740 5931 -369 1 1341 1454 54 15 10 chr3 99113294 99113498 -60486285 - L1Md_F2 LINE L1 0 6582 6378 1 1341 694 282 7 0 chr3 99115942 99116091 -60483692 - MamSINE1 SINE tRNA -139 151 2 1 1341 453 290 0 0 chr3 99118876 99119052 -60480731 + C-rich Low_complexity Low_complexity 4 179 0 1 1341 182 330 96 56 chr3 99119254 99119379 -60480404 - L2c LINE L2 -1 3386 3257 1 1341 1112 275 114 5 chr3 99120414 99120509 -60479274 - Lx6 LINE L1 -28 7432 7322 1 1341 264 30 0 0 chr3 99120509 99120542 -60479241 + (CAA)n Simple_repeat Simple_repeat 2 34 0 1 1341 1112 275 114 5 chr3 99120542 99120822 -60478961 - Lx6 LINE L1 -139 7321 7016 1 1341 250 388 107 5 chr3 99122564 99122761 -60477022 + MIRb SINE MIR 5 221 -47 1 1341 196 360 42 42 chr3 99123499 99123618 -60476165 + MIR3 SINE MIR 13 131 -77 1 1341 219 154 0 0 chr3 99125708 99125747 -60474036 + T-rich Low_complexity Low_complexity 1 39 0 1 1341 901 168 201 0 chr3 99125756 99125935 -60473848 - B3 SINE B2 0 216 2 1 1341 381 43 0 0 chr3 99127167 99127214 -60472569 + (CATA)n Simple_repeat Simple_repeat 2 48 0 1 1341 193 319 51 42 chr3 99127671 99127789 -60471994 + L2 LINE L2 1146 1264 -2155 1 1341 2516 181 47 68 chr3 99130907 99131594 -60468189 - Lx9 LINE L1 0 7644 6973 1 1341 198 167 0 0 chr3 99132621 99132657 -60467126 + (TTA)n Simple_repeat Simple_repeat 2 37 0 1 1341 566 308 80 42 chr3 99133703 99133945 -60465838 + L1MA5 LINE L1 5808 6061 -239 2 1341 356 39 0 0 chr3 99133945 99133996 -60465787 - L1Md_T LINE L1 0 6582 6532 2 1341 566 308 80 42 chr3 99133996 99134228 -60465555 + L1MA5 LINE L1 6062 6300 0 2 1341 811 233 25 72 chr3 99135065 99135301 -60464482 - MER121 Unknown Unknown -175 237 13 2 1341 243 61 0 0 chr3 99135524 99135557 -60464226 + (CA)n Simple_repeat Simple_repeat 2 34 0 2 1341 23 0 0 0 chr3 99136030 99136053 -60463730 + AT_rich Low_complexity Low_complexity 1 23 0 2 1341 1608 88 46 0 chr3 99136784 99137023 -60462760 + L1_Mus1 LINE L1 6318 6567 0 2 1341 25 31 0 0 chr3 99137023 99137055 -60462728 + AT_rich Low_complexity Low_complexity 1 32 0 2 1341 226 309 160 0 chr3 99139523 99139617 -60460166 - Charlie19a DNA Charlie -217 169 61 2 1341 1074 269 28 36 chr3 99144803 99145165 -60454618 - ORR1E LTR MaLR 0 359 1 2 1341 209 189 0 0 chr3 99145167 99145204 -60454579 + (TTGG)n Simple_repeat Simple_repeat 2 38 0 2 1341 507 160 0 0 chr3 99145204 99145298 -60454485 + CT-rich Low_complexity Low_complexity 1 94 0 2 1341 287 268 70 0 chr3 99145299 99145370 -60454413 - ID4 SINE ID -6 77 2 2 1341 209 273 0 43 chr3 99145618 99145687 -60454096 + CT-rich Low_complexity Low_complexity 2 67 0 2 1341 1452 204 116 47 chr3 99146231 99146611 -60453172 - MTD LTR MaLR 0 419 14 2 1341 530 101 0 20 chr3 99146623 99146724 -60453059 + (TCTCTG)n Simple_repeat Simple_repeat 2 100 0 2 1341 248 0 31 0 chr3 99146724 99146756 -60453027 + (CA)n Simple_repeat Simple_repeat 1 33 0 2 1341 276 247 89 11 chr3 99147314 99147404 -60452379 - MLT2B3 LTR ERVL -457 97 1 2 1341 706 285 48 0 chr3 99147862 99148027 -60451756 + B3A SINE B2 1 173 -25 2 1341 25 31 0 0 chr3 99148305 99148337 -60451446 + AT_rich Low_complexity Low_complexity 1 32 0 2 1341 1534 116 4 9 chr3 99148429 99148656 -60451127 - URR1A DNA MER1_type 0 226 1 2 1341 204 67 0 0 chr3 99149534 99149564 -60450219 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 2 1341 1176 51 0 0 chr3 99149564 99149702 -60450081 - B1_Mus2 SINE Alu -9 138 1 2 1341 306 125 0 0 chr3 99149792 99149840 -60449943 + (TA)n Simple_repeat Simple_repeat 2 49 0 2 1341 271 323 80 36 chr3 99150046 99150184 -60449599 - L3 LINE CR1 -2266 2223 2080 2 1341 476 330 149 71 chr3 99150329 99150763 -60449020 - MLT1K LTR MaLR 0 610 126 2 1341 268 333 96 19 chr3 99152202 99152358 -60447425 - MIRb SINE MIR -81 187 20 2 1341 252 86 0 0 chr3 99152989 99153024 -60446759 + (T)n Simple_repeat Simple_repeat 1 35 0 2 1341 195 125 0 0 chr3 99154044 99154084 -60445699 + (TTTTTG)n Simple_repeat Simple_repeat 4 43 0 2 1341 189 0 0 0 chr3 99154171 99154192 -60445591 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 2 1341 295 350 58 0 chr3 99154685 99154805 -60444978 + MER5A DNA MER1_type 63 189 0 2 1341 246 32 0 0 chr3 99156650 99156681 -60443102 + (TTTTTG)n Simple_repeat Simple_repeat 2 32 0 2 1341 342 0 0 0 chr3 99156891 99156929 -60442854 + (CA)n Simple_repeat Simple_repeat 2 39 0 2 1341 203 342 140 35 chr3 99158209 99158364 -60441419 - MIRc SINE MIR -19 249 86 2 1341 276 332 109 41 chr3 99158468 99158688 -60441095 - MIRb SINE MIR -28 240 6 2 1341 1081 225 29 32 chr3 99159296 99159608 -60440175 + Lx7 LINE L1 7036 7346 -350 2 1341 464 0 18 0 chr3 99159619 99159675 -60440108 + (TCTA)n Simple_repeat Simple_repeat 2 58 0 2 1341 723 275 34 20 chr3 99159678 99159882 -60439901 - Lx5 LINE L1 -17 7033 6827 2 1341 786 162 7 66 chr3 99160293 99160445 -60439338 + B1_Mus1 SINE Alu 5 147 -1 2 1341 856 213 27 68 chr3 99160631 99160853 -60438930 + B3 SINE B2 1 213 -3 2 1341 682 272 42 0 chr3 99160900 99161091 -60438692 + Lx9 LINE L1 7278 7476 -168 2 1341 735 52 0 0 chr3 99161091 99161187 -60438596 + (TA)n Simple_repeat Simple_repeat 2 97 0 2 1341 450 0 0 0 chr3 99161696 99161746 -60438037 + (TTTA)n Simple_repeat Simple_repeat 3 52 0 2 1341 453 242 126 0 chr3 99161834 99161929 -60437854 + URR1A DNA MER1_type 2 108 -118 2 1341 21 0 0 0 chr3 99161929 99161950 -60437833 + AT_rich Low_complexity Low_complexity 1 21 0 2 1341 1881 85 0 0 chr3 99161951 99162197 -60437586 - L1_Mus2 LINE L1 -1 6565 6320 2 1341 35945 46 0 4 chr3 99162231 99168741 -60431042 - L1Md_T LINE L1 0 6585 1 2 1341 914 104 8 0 chr3 99168754 99168888 -60430895 + URR1A DNA MER1_type 91 225 -1 2 1341 379 292 28 87 chr3 99169808 99170097 -60429686 + L1VL1 LINE L1 232 503 -5919 2 1341 478 260 16 8 chr3 99170226 99170354 -60429429 + L1Md_F LINE L1 675 803 -5813 2 1341 18475 181 67 39 chr3 99170362 99175652 -60424131 + L1Md_F LINE L1 725 5681 -202 2 1341 290 324 231 0 chr3 99176037 99176210 -60423573 - MIRb SINE MIR -6 262 50 2 1341 262 216 0 0 chr3 99177557 99177608 -60422175 - B3A SINE B2 -147 51 1 2 1341 204 125 0 0 chr3 99177618 99177650 -60422133 + (TAG)n Simple_repeat Simple_repeat 1 32 0 2 1341 1960 161 53 17 chr3 99178680 99179040 -60420743 - ORR1D1 LTR MaLR 0 374 2 2 1341 1745 52 14 0 chr3 99179431 99179642 -60420141 + L1Md_F3 LINE L1 6356 6569 -15 2 1341 3640 182 36 3 chr3 99179777 99180388 -60419395 + Lx5 LINE L1 6411 7041 -9 2 1341 285 29 0 0 chr3 99180388 99180422 -60419361 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 2 1341 216 0 0 0 chr3 99180866 99180890 -60418893 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 2 1341 283 350 8 39 chr3 99181512 99181640 -60418143 + B1_Mus2 SINE Alu 2 125 -22 2 1341 558 263 44 15 chr3 99181818 99181953 -60417830 - B3A SINE B2 -56 142 4 2 1341 231 195 0 0 chr3 99182361 99182402 -60417381 + T-rich Low_complexity Low_complexity 4 44 0 2 1341 273 246 0 0 chr3 99182700 99182765 -60417018 + B4A SINE B4 1 65 -227 2 1341 26 0 0 0 chr3 99183075 99183101 -60416682 + AT_rich Low_complexity Low_complexity 1 26 0 2 1341 459 250 194 32 chr3 99183101 99183131 -60416652 - B3 SINE B2 0 216 170 2 1341 180 77 0 0 chr3 99183131 99183157 -60416626 + (CATG)n Simple_repeat Simple_repeat 3 28 0 2 1341 459 250 194 32 chr3 99183157 99183312 -60416471 - B3 SINE B2 -47 169 2 2 1341 330 295 67 37 chr3 99183321 99183455 -60416328 - B1F1 SINE Alu -7 142 5 2 1341 190 376 90 8 chr3 99184625 99184759 -60415024 - MIR3 SINE MIR -61 147 3 2 1341 32 57 0 0 chr3 99184800 99184853 -60414930 + AT_rich Low_complexity Low_complexity 1 53 0 2 1341 755 286 0 48 chr3 99185565 99185771 -60414012 - B3A SINE B2 -2 196 1 2 1341 225 0 0 0 chr3 99186064 99186089 -60413694 + (TTTG)n Simple_repeat Simple_repeat 3 27 0 2 1341 526 328 8 15 chr3 99186111 99186244 -60413539 + ID_B1 SINE B4 85 216 -8 2 1341 605 340 72 25 chr3 99186480 99186758 -60413025 + RMER15 LTR ERVL 271 561 -14 2 1341 1444 280 51 8 chr3 99186847 99187380 -60412403 + L1M2 LINE L1 3987 4542 -1601 2 1341 1036 61 8 0 chr3 99187471 99187603 -60412180 - L1Md_F3 LINE L1 -623 5959 5827 2 1341 5115 66 6 8 chr3 99187603 99188241 -60411542 + L1Md_F3 LINE L1 5934 6570 -14 2 1341 470 336 0 0 chr3 99188323 99188469 -60411314 + (CA)n Simple_repeat Simple_repeat 2 147 0 2 1341 349 43 0 21 chr3 99188469 99188517 -60411266 + HAL1-3A_ME LINE L1 1976 2022 -836 2 1341 357 274 27 0 chr3 99188517 99188618 -60411165 + Lx9 LINE L1 6445 6529 -1115 2 1341 1681 269 58 38 chr3 99188636 99188867 -60410916 + L1M2 LINE L1 4609 4851 -1292 2 1341 426 121 0 0 chr3 99188867 99188933 -60410850 + (CA)n Simple_repeat Simple_repeat 2 67 0 2 1341 1681 269 58 38 chr3 99188933 99189392 -60410391 + L1M2 LINE L1 4852 5313 -830 2 1341 204 40 0 0 chr3 99189647 99189672 -60410111 + (TAATG)n Simple_repeat Simple_repeat 4 28 0 2 1341 403 335 82 53 chr3 99189794 99189964 -60409819 - MLT1J2 LTR MaLR -229 219 45 2 1341 183 80 0 0 chr3 99190346 99190371 -60409412 + (TTG)n Simple_repeat Simple_repeat 1 25 0 2 1341 180 0 0 0 chr3 99190605 99190625 -60409158 + (GCCTG)n Simple_repeat Simple_repeat 4 23 0 2 1341 23 0 0 0 chr3 99190840 99190863 -60408920 + AT_rich Low_complexity Low_complexity 1 23 0 2 1341 1357 14 0 0 chr3 99191398 99191545 -60408238 - B1_Mm SINE Alu 0 147 1 2 1341 188 316 29 48 chr3 99191549 99191652 -60408131 + MIR SINE MIR 66 166 -96 2 1341 812 350 87 22 chr3 99192111 99192523 -60407260 + LTR16B2 LTR ERVL 1 439 -23 2 1341 180 333 103 0 chr3 99192641 99192728 -60407055 - MIRc SINE MIR -133 135 40 2 1341 967 169 54 11 chr3 99192825 99193010 -60406773 + B2_Mm2 SINE B2 1 193 -2 2 1341 27377 83 9 7 chr3 99193040 99197367 -60402416 + L1Md_F2 LINE L1 411 4750 -1133 2 1341 1015 58 0 0 chr3 99197359 99197480 -60402303 + L1Md_F2 LINE L1 5466 5586 -297 2 1341 7980 65 13 2 chr3 99197480 99198462 -60401321 + L1Md_F2 LINE L1 5587 6579 -3 2 1341 387 158 0 0 chr3 99198565 99198592 -60401191 + A-rich Low_complexity Low_complexity 1 27 0 2 1341 1056 85 43 0 chr3 99198592 99198733 -60401050 + B1_Mus2 SINE Alu 1 147 0 2 1341 387 158 0 0 chr3 99198733 99198787 -60400996 + A-rich Low_complexity Low_complexity 28 81 0 2 1341 420 263 11 0 chr3 99198854 99198949 -60400834 - MER45A DNA Tip100 -29 149 54 2 1341 35 71 0 0 chr3 99200328 99200398 -60399385 + AT_rich Low_complexity Low_complexity 1 70 0 2 1341 4887 132 41 3 chr3 99200415 99201123 -60398660 - Lx3B LINE L1 -5 6968 6234 2 1341 587 290 6 85 chr3 99201147 99201324 -60398459 - RSINE1 SINE B4 0 165 3 2 1341 250 214 143 0 chr3 99201539 99201609 -60398174 + Lx9 LINE L1 7408 7487 -157 2 1341 2987 52 44 3 chr3 99201625 99201992 -60397791 - L1Md_F2 LINE L1 0 6582 6201 2 1341 4014 55 12 62 chr3 99202006 99202525 -60397258 - MT2_Mm LTR ERVL 0 493 1 2 1341 698 301 91 74 chr3 99202567 99202727 -60397056 + MLT1C LTR MaLR 4 179 -288 2 1341 544 229 102 91 chr3 99202727 99202914 -60396869 + B3A SINE B2 5 193 -5 2 1341 698 301 91 74 chr3 99202914 99203172 -60396611 + MLT1C LTR MaLR 180 429 -38 2 1341 405 344 64 9 chr3 99203270 99203490 -60396293 - MER33 DNA MER1_type -84 240 9 2 1341 180 176 0 0 chr3 99205741 99205775 -60394008 + (TG)n Simple_repeat Simple_repeat 1 34 0 3 1341 340 288 82 6 chr3 99205775 99205946 -60393837 + MER121 Unknown Unknown 122 305 -107 3 1341 268 313 216 5 chr3 99206959 99207158 -60392625 - MIR SINE MIR -14 248 8 3 1341 363 296 13 199 chr3 99207472 99207628 -60392155 - RSINE1 SINE B4 -14 151 25 3 1341 1422 225 63 0 chr3 99208305 99208589 -60391194 - Lx5 LINE L1 -27 7023 6722 3 1341 1752 308 76 7 chr3 99208899 99209478 -60390305 + Lx8 LINE L1 6523 7141 -332 3 1341 222 37 0 0 chr3 99209478 99209505 -60390278 + (TTAA)n Simple_repeat Simple_repeat 4 30 0 3 1341 1382 190 32 62 chr3 99209511 99209820 -60389963 - Lx6 LINE L1 -690 6770 6471 3 1341 328 219 157 47 chr3 99209853 99210025 -60389758 + Lx8 LINE L1 7270 7460 -13 3 1341 39403 47 8 0 chr3 99210024 99216349 -60383434 - L1Md_T LINE L1 0 6582 272 3 1341 25 0 0 0 chr3 99217148 99217173 -60382610 + AT_rich Low_complexity Low_complexity 1 25 0 3 1341 10544 77 4 7 chr3 99217194 99218636 -60381147 - Lx3_Mus LINE L1 -1 7008 5575 3 1341 4338 21 0 0 chr3 99218636 99219103 -60380680 - L1Md_A LINE L1 0 6582 6116 3 1341 4069 67 2 4 chr3 99219103 99219301 -60380482 - Lx3_Mus LINE L1 -312 5574 5377 3 1341 3197 18 0 0 chr3 99219301 99219638 -60380145 + IAPLTR1a_Mm LTR ERVK 1 337 0 3 167 43297 17 9 3 chr3 99219638 99226038 -60373745 + IAPEz-int LTR ERVK 8 6481 0 3 1342 2996 15 9 0 chr3 99226038 99226372 -60373411 + IAPLTR1a_Mm LTR ERVK 1 337 0 3 1342 1499 97 38 17 chr3 99226373 99226613 -60373170 - Lx3_Mus LINE L1 -505 5381 5137 3 1342 251 149 0 0 chr3 99226615 99226662 -60373121 - ORR1B1 LTR MaLR -347 47 1 3 1342 696 201 60 0 chr3 99226744 99226878 -60372905 - B1_Mur2 SINE Alu -7 142 1 3 1342 2424 94 14 6 chr3 99227208 99227560 -60372223 - L1_Mus3 LINE L1 -7 6631 6277 3 1342 296 289 61 14 chr3 99227564 99227697 -60372086 - MIRb SINE MIR -47 161 27 3 1342 423 0 0 0 chr3 99228425 99228472 -60371311 + (TTTA)n Simple_repeat Simple_repeat 3 49 0 3 1342 2763 211 177 3 chr3 99228473 99229144 -60370639 - Lx4B LINE L1 -20 7038 6251 3 1342 590 250 16 55 chr3 99229171 99229353 -60370430 - RLTR20B1 LTR ERVK -64 499 325 3 1342 8053 71 1 3 chr3 99229355 99231015 -60368768 - L1Md_F2 LINE L1 -63 6519 4863 3 1342 9584 108 27 20 chr3 99231018 99233303 -60366480 + L1Md_F LINE L1 233 2534 -3349 3 1342 41322 13 0 6 chr3 99233303 99239461 -60360322 - L1Md_A LINE L1 0 6582 468 3 1342 1611 74 0 14 chr3 99239448 99239667 -60360116 + L1Md_F LINE L1 2508 2723 -3160 3 1342 1434 151 4 8 chr3 99239662 99239896 -60359887 - L1VL1 LINE L1 -6189 233 1 3 1342 1404 203 94 17 chr3 99239904 99240264 -60359519 - RLTR20B1 LTR ERVK -174 389 2 3 1342 3414 177 38 2 chr3 99240275 99241117 -60358666 + Lx4B LINE L1 5366 6240 -818 3 1342 864 153 157 73 chr3 99241180 99241384 -60358399 - URR1B DNA MER1_type 0 225 5 3 1342 963 242 5 9 chr3 99241668 99241885 -60357898 - RMER1C Other Other -1057 285 70 3 1342 2299 90 6 12 chr3 99242110 99242437 -60357346 - L1Md_F2 LINE L1 -11 6571 6247 3 1342 2231 50 11 0 chr3 99242437 99242714 -60357069 + L1Md_F2 LINE L1 5715 5994 -588 3 1342 296 322 0 63 chr3 99242908 99243034 -60356749 - PB1D7 SINE Alu 0 120 3 3 1342 300 53 0 0 chr3 99243494 99243532 -60356251 + (CCAA)n Simple_repeat Simple_repeat 2 39 0 3 1342 269 269 78 78 chr3 99243550 99243691 -60356092 + MLT1A LTR MaLR 217 357 -17 3 1342 25 51 0 0 chr3 99244494 99244533 -60355250 + AT_rich Low_complexity Low_complexity 1 39 0 3 1342 360 365 33 20 chr3 99244533 99244684 -60355099 + RSINE1 SINE B4 11 163 -2 3 1342 23 33 0 0 chr3 99244905 99244935 -60354848 + AT_rich Low_complexity Low_complexity 1 30 0 3 1342 249 312 46 0 chr3 99245138 99245247 -60354536 - MIR SINE MIR -31 231 118 3 1342 958 275 24 12 chr3 99245353 99245600 -60354183 + B4A SINE B4 31 280 -12 3 1342 387 56 0 0 chr3 99245659 99245713 -60354070 + (CA)n Simple_repeat Simple_repeat 2 55 0 3 1342 21 0 0 0 chr3 99245986 99246007 -60353776 + AT_rich Low_complexity Low_complexity 1 21 0 3 1342 234 0 0 0 chr3 99247121 99247147 -60352636 + (CA)n Simple_repeat Simple_repeat 2 27 0 3 1342 585 24 36 0 chr3 99249609 99249692 -60350091 + (TC)n Simple_repeat Simple_repeat 2 87 0 3 1342 323 317 10 10 chr3 99249742 99249844 -60349939 - ID_B1 SINE B4 -18 206 105 3 1342 186 297 31 0 chr3 99250132 99250196 -60349587 - L2c LINE L2 -71 3316 3251 3 1342 288 209 109 34 chr3 99250896 99251015 -60348768 + Lx9 LINE L1 7426 7553 -91 3 1342 432 0 0 0 chr3 99251188 99251236 -60348547 + (CA)n Simple_repeat Simple_repeat 1 48 0 3 1342 185 65 0 31 chr3 99251542 99251574 -60348209 + (TGGGGG)n Simple_repeat Simple_repeat 3 33 0 3 1342 237 246 0 0 chr3 99252308 99252373 -60347410 + (TA)n Simple_repeat Simple_repeat 1 65 0 3 1342 228 303 86 59 chr3 99253282 99253468 -60346315 - L3 LINE CR1 -138 4351 4161 3 1342 248 264 0 27 chr3 99253543 99253617 -60346166 + L1MEe LINE L1 218 289 -4565 3 1342 421 291 83 107 chr3 99253967 99254136 -60345647 + B4 SINE B4 7 171 -121 3 1342 7549 65 2 5 chr3 99254137 99255380 -60344403 - L1_Mus1 LINE L1 -59 6508 5270 3 1342 796 209 7 0 chr3 99255381 99255520 -60344263 - B1_Mur1 SINE Alu -7 142 3 3 1342 951 231 63 0 chr3 99255538 99255759 -60344024 - Lx8 LINE L1 -360 7113 6879 3 1342 829 276 24 12 chr3 99255915 99256161 -60343622 - Lx7 LINE L1 -1782 5914 5666 3 1342 578 305 16 21 chr3 99256305 99256499 -60343284 + B3A SINE B2 5 197 -1 3 1342 311 265 29 0 chr3 99256599 99256667 -60343116 + ID4 SINE ID 12 81 -2 3 1342 2397 166 14 12 chr3 99256758 99257174 -60342609 + MTC LTR MaLR 3 419 -2 3 1342 1892 52 0 0 chr3 99257452 99257681 -60342102 - L1_Mus1 LINE L1 0 6567 6339 3 1342 22 0 0 0 chr3 99258152 99258174 -60341609 + AT_rich Low_complexity Low_complexity 1 22 0 3 1342 464 209 19 9 chr3 99258733 99258839 -60340944 - B1_Mur2 SINE Alu -1 148 42 3 1342 1163 262 75 29 chr3 99258848 99259076 -60340707 - MTEa LTR MaLR 0 379 147 3 1342 2531 147 8 0 chr3 99259076 99259463 -60340320 + ORR1B1 LTR MaLR 5 394 0 3 1342 1163 262 75 29 chr3 99259463 99259580 -60340203 - MTEa LTR MaLR -233 146 18 3 1342 220 256 10 0 chr3 99260742 99260803 -60338980 + MIRb SINE MIR 194 256 -6 3 1342 862 104 30 12 chr3 99260871 99260889 -60338894 + (TTTC)n Simple_repeat Simple_repeat 4 20 0 3 1342 1518 22 0 0 chr3 99260889 99261067 -60338716 + (TTCCC)n Simple_repeat Simple_repeat 3 180 0 3 1342 862 104 30 12 chr3 99261067 99261213 -60338570 + (TTTC)n Simple_repeat Simple_repeat 2 151 0 3 1342 238 156 15 15 chr3 99261204 99261269 -60338514 + CT-rich Low_complexity Low_complexity 1 65 0 3 1342 3903 60 28 12 chr3 99261461 99261970 -60337813 + L1Md_F2 LINE L1 6065 6581 -1 3 1342 387 0 0 0 chr3 99262549 99262592 -60337191 + (TC)n Simple_repeat Simple_repeat 2 44 0 3 1342 546 335 143 21 chr3 99264017 99264491 -60335292 + MLT1F LTR MaLR 1 532 -16 3 1342 2181 208 24 20 chr3 99265520 99266031 -60333752 - RMER5 LTR ERV1 -9 525 13 3 1342 5559 36 0 35 chr3 99266179 99267193 -60332590 + L1Md_A LINE L1 625 1594 -4289 3 1342 666 228 35 0 chr3 99267783 99267928 -60331855 - MTE2b LTR MaLR -26 353 204 3 1342 2202 239 36 71 chr3 99267930 99268619 -60331164 + Lx7 LINE L1 6917 7581 -115 3 1342 7998 90 32 0 chr3 99268607 99270421 -60329362 - L1_Mus1 LINE L1 0 6567 4689 3 1342 200 86 29 0 chr3 99270885 99270920 -60328863 + (CTATG)n Simple_repeat Simple_repeat 3 38 0 3 1342 546 16 0 0 chr3 99272006 99272069 -60327714 + (GA)n Simple_repeat Simple_repeat 2 64 0 3 1342 298 222 49 14 chr3 99273513 99273597 -60326186 - PB1D10 SINE Alu -23 97 9 3 1342 27 29 0 0 chr3 99273597 99273631 -60326152 + AT_rich Low_complexity Low_complexity 1 34 0 3 1342 233 261 21 42 chr3 99273658 99273754 -60326029 - Lx8 LINE L1 -1293 6180 6087 3 1342 2955 287 126 12 chr3 99273812 99274883 -60324900 + Lx8 LINE L1 6195 7387 -86 3 1342 4511 203 28 7 chr3 99274890 99275776 -60324007 + Lx5 LINE L1 6146 7050 0 3 1342 870 286 115 19 chr3 99275778 99276229 -60323554 + L1MB3 LINE L1 5479 5958 -204 3 1342 286 211 0 0 chr3 99276364 99276421 -60323362 + MTC LTR MaLR 1 57 -364 3 1342 524 137 10 0 chr3 99276421 99276523 -60323260 + (GA)n Simple_repeat Simple_repeat 1 103 0 3 1342 37578 37 12 11 chr3 99276770 99278416 -60321367 - L1Md_T LINE L1 -3 6579 4913 3 1342 238 167 46 77 chr3 99278416 99278481 -60321302 + RMER20A LTR ERVK 186 248 -268 3 1342 37578 37 12 11 chr3 99278481 99282142 -60317641 - L1Md_T LINE L1 -3 4912 1203 3 1342 4579 118 2 97 chr3 99282108 99282937 -60316846 - L1Md_F LINE L1 -5380 1139 389 3 1342 832 75 83 0 chr3 99282973 99283093 -60316690 - MTB_Mm LTR MaLR 0 407 278 3 1342 375 41 0 0 chr3 99283094 99283143 -60316640 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 3 1342 5097 55 8 0 chr3 99283143 99283738 -60316045 + L1Md_F2 LINE L1 5969 6568 -14 3 1342 756 259 31 16 chr3 99283739 99283956 -60315827 + MTE2b-int LTR MaLR 1380 1578 -2 3 1342 650 276 454 17 chr3 99283958 99284178 -60315605 + MTE2b LTR MaLR 1 316 -63 3 1342 412 274 19 9 chr3 99284881 99284988 -60314795 - RMER19C LTR ERVK -34 577 470 3 1342 8515 109 39 4 chr3 99284989 99286228 -60313555 + Lx2 LINE L1 5706 6987 -10 3 1342 814 270 124 47 chr3 99286231 99286550 -60313233 - RMER19C LTR ERVK -127 484 99 3 1342 260 61 158 188 chr3 99286588 99286689 -60313094 - MurERV4_19-int LTR ERVK 0 5780 5683 3 1342 244 175 246 0 chr3 99286820 99286877 -60312906 - ID4_ SINE ID -11 72 2 3 1342 180 0 0 0 chr3 99287093 99287113 -60312670 + (TTG)n Simple_repeat Simple_repeat 2 21 0 3 1342 1200 64 0 0 chr3 99287113 99287253 -60312530 - B1_Mus1 SINE Alu -8 140 1 3 1342 261 313 30 7 chr3 99287399 99287534 -60312249 - L1MD3 LINE L1 -205 7790 7653 3 1342 459 0 0 0 chr3 99287542 99287593 -60312190 + (TTCA)n Simple_repeat Simple_repeat 2 52 0 4 1342 257 218 172 0 chr3 99287593 99287680 -60312103 - Lx6 LINE L1 -30 7430 7329 4 1342 30 27 0 0 chr3 99287993 99288030 -60311753 + AT_rich Low_complexity Low_complexity 1 37 0 4 1342 362 21 0 21 chr3 99288114 99288162 -60311621 + (TTA)n Simple_repeat Simple_repeat 3 49 0 4 1342 882 300 4 8 chr3 99288196 99288448 -60311335 - Lx9 LINE L1 -227 7417 7167 4 1342 355 217 0 44 chr3 99288451 99288552 -60311231 - Lx7 LINE L1 0 7696 7612 4 1342 794 311 16 69 chr3 99291680 99291984 -60307799 - B4 SINE B4 -2 290 3 4 1342 377 211 94 31 chr3 99291990 99292117 -60307666 - L1MB1 LINE L1 -244 6181 6047 4 1342 1051 167 0 0 chr3 99292117 99292291 -60307492 - URR1B DNA MER1_type 0 225 52 4 1342 432 280 146 40 chr3 99292308 99292828 -60306955 - L1MB1 LINE L1 -386 6018 5422 4 1342 956 303 94 17 chr3 99292822 99293235 -60306548 - L1MB1 LINE L1 -5923 461 17 4 1342 4290 44 2 0 chr3 99293361 99293843 -60305940 - L1_Mus1 LINE L1 -1 6566 6084 4 1342 2651 60 0 3 chr3 99293843 99294177 -60305606 + L1_Mus1 LINE L1 5750 6082 -485 4 1342 530 297 44 25 chr3 99294189 99294573 -60305210 - L1M3d LINE L1 -4437 2412 2026 4 1342 339 273 60 16 chr3 99294730 99294841 -60304942 - B4 SINE B4 -69 155 39 4 1342 284 288 23 31 chr3 99294882 99295011 -60304772 - L1M3d LINE L1 -4740 2029 1902 4 1342 702 304 52 38 chr3 99295102 99295389 -60304394 - B4A SINE B4 -1 291 1 4 1342 311 354 71 52 chr3 99295423 99295733 -60304050 - L1M3d LINE L1 -4887 1882 1567 4 1342 6038 80 4 6 chr3 99295728 99296523 -60303260 + L1Md_F2 LINE L1 5767 6559 -23 4 1342 312 95 38 2 chr3 99296895 99296948 -60302835 - MIR SINE MIR -4 272 211 4 1342 564 15 0 0 chr3 99297702 99297767 -60302016 + (CA)n Simple_repeat Simple_repeat 2 66 0 4 1342 3901 104 41 7 chr3 99298206 99298748 -60301035 - Lx LINE L1 -1 6653 6094 4 1342 4302 86 5 0 chr3 99298764 99299322 -60300461 + Lx LINE L1 5587 6147 -507 4 1342 180 0 0 0 chr3 99299325 99299345 -60300438 + (CAA)n Simple_repeat Simple_repeat 2 21 0 4 1342 255 214 0 0 chr3 99300336 99300406 -60299377 + (CCA)n Simple_repeat Simple_repeat 1 70 0 4 1342 203 182 0 52 chr3 99300418 99300476 -60299307 + A-rich Low_complexity Low_complexity 4 58 0 4 1342 4231 88 0 14 chr3 99300946 99301510 -60298273 + L1_Mus4 LINE L1 6080 6635 -1 4 1342 195 42 0 0 chr3 99301533 99301557 -60298226 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 4 1342 766 181 67 12 chr3 99302155 99302334 -60297449 - ORR1D1 LTR MaLR -199 175 1 4 1342 2187 105 227 0 chr3 99303142 99303486 -60296297 - BGLII_Mus LTR ERVK 0 422 1 4 1342 542 201 99 19 chr3 99303486 99303629 -60296154 - MYSERV16_I-int LTR ERVK 0 2842 2686 4 1342 2748 42 0 0 chr3 99303629 99303942 -60295841 - L1Md_F2 LINE L1 -12 6570 6258 4 1342 542 201 99 19 chr3 99303942 99303960 -60295823 - MYSERV16_I-int LTR ERVK -157 2685 2668 4 1342 221 57 29 0 chr3 99306525 99306560 -60293223 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 4 1342 3962 192 98 35 chr3 99306560 99308277 -60291506 - MYSERV16_I-int LTR ERVK -181 2145 286 4 1342 1243 240 60 16 chr3 99308353 99308671 -60291112 - MYSERV-int LTR ERVK -2131 4419 4088 4 1342 249 33 0 0 chr3 99308774 99308804 -60290979 + (A)n Simple_repeat Simple_repeat 1 30 0 4 1342 9513 192 14 17 chr3 99308810 99310612 -60289171 - MYSERV6-int LTR ERVK -4670 4289 2493 4 1342 1410 120 33 4 chr3 99310612 99310855 -60288928 - BGLII_Mus LTR ERVK -82 340 91 4 1342 2995 77 51 8 chr3 99311095 99311489 -60288294 - RLTR10A LTR ERVK 0 411 1 4 1342 5554 63 4 14 chr3 99311489 99312209 -60287574 - RLTR10-int LTR ERVK -1 1986 1274 4 1342 194 81 0 26 chr3 99312292 99312330 -60287453 + (CAAAAA)n Simple_repeat Simple_repeat 5 41 0 4 1342 2043 92 21 21 chr3 99312364 99312654 -60287129 - RLTR10-int LTR ERVK -710 1277 988 4 1342 338 158 0 0 chr3 99312637 99312694 -60287089 - RLTR10-int LTR ERVK -6039 503 447 4 1342 566 334 30 30 chr3 99312711 99313106 -60286677 - MYSERV6-int LTR ERVK -6015 1566 1172 4 1342 1097 134 21 38 chr3 99313131 99313317 -60286466 - MYSERV6-int LTR ERVK -995 992 810 4 1342 1370 63 6 17 chr3 99313766 99313943 -60285840 - MYSERV6-int LTR ERVK -1511 476 302 4 1342 816 111 62 0 chr3 99313943 99314087 -60285696 - RLTR10A LTR ERVK 0 411 259 4 1342 2940 3 0 0 chr3 99314092 99314400 -60285383 - L1Md_A LINE L1 0 6582 6275 4 1342 6116 1 1 0 chr3 99314400 99315293 -60284490 + L1Md_A LINE L1 5358 6251 -331 4 1342 2007 68 38 0 chr3 99315293 99315557 -60284226 - RLTR10A LTR ERVK -137 274 1 4 1342 807 103 0 0 chr3 99316139 99316255 -60283528 + URR1B DNA MER1_type 110 225 0 4 1342 836 248 64 20 chr3 99316257 99316459 -60283324 + B3 SINE B2 5 215 -1 4 1342 366 239 0 0 chr3 99316636 99316707 -60283076 + MamRep1894 DNA hAT 2 72 -51 4 1342 225 331 92 49 chr3 99317764 99317948 -60281835 - L2c LINE L2 -235 3152 2961 4 1342 676 300 45 59 chr3 99318534 99318821 -60280962 - B4A SINE B4 -8 284 2 4 1342 364 219 14 0 chr3 99318881 99318954 -60280829 - B3A SINE B2 -124 74 1 4 1342 608 229 99 12 chr3 99319049 99319221 -60280562 - RMER5 LTR ERV1 -300 234 48 4 1342 226 323 16 0 chr3 99320711 99320773 -60279010 - MLT1H2 LTR MaLR -346 143 81 4 1342 281 233 44 0 chr3 99321026 99321116 -60278667 - L1M5 LINE L1 -3161 2985 2892 4 1342 427 327 93 0 chr3 99322005 99322155 -60277628 - B3A SINE B2 -1 197 34 4 1342 2071 199 11 16 chr3 99322883 99323256 -60276527 + ORR1D1 LTR MaLR 1 371 -3 4 1342 692 298 77 55 chr3 99323837 99324086 -60275697 - MLT1A0 LTR MaLR -9 399 98 4 1342 2698 101 92 31 chr3 99324086 99324534 -60275249 + IAPLTR2_Mm LTR ERVK 1 475 0 4 1342 692 293 79 56 chr3 99324534 99324603 -60275180 - MLT1A0 LTR MaLR -268 97 31 4 1342 1543 127 4 4 chr3 99324734 99324971 -60274812 + Lx3C LINE L1 6640 6876 -100 4 1342 297 28 0 0 chr3 99325693 99325729 -60274054 + B2_Mm2 SINE B2 4 39 -156 4 1342 23 0 0 0 chr3 99325735 99325758 -60274025 + AT_rich Low_complexity Low_complexity 1 23 0 4 1342 1185 115 0 0 chr3 99325766 99325931 -60273852 + B2_Mm2 SINE B2 1 165 -30 4 1342 243 310 0 0 chr3 99325955 99326013 -60273770 + B3 SINE B2 11 68 -148 4 1342 568 270 74 74 chr3 99326016 99326232 -60273551 - B4A SINE B4 -74 218 3 4 1342 291 28 0 0 chr3 99326257 99326293 -60273490 + (TG)n Simple_repeat Simple_repeat 2 37 0 4 1342 1626 178 72 7 chr3 99327277 99327582 -60272201 - ORR1C2 LTR MaLR -58 326 2 4 1342 449 283 31 42 chr3 99327606 99327798 -60271985 + RMER15-int LTR ERVL 599 788 -4211 4 1342 24 0 0 0 chr3 99327813 99327837 -60271946 + AT_rich Low_complexity Low_complexity 1 24 0 4 1342 1910 147 10 0 chr3 99327917 99328231 -60271552 - ORR1A3 LTR MaLR -9 317 1 4 1342 21 36 0 0 chr3 99330228 99330256 -60269527 + AT_rich Low_complexity Low_complexity 1 28 0 4 1342 818 148 89 0 chr3 99330288 99330423 -60269360 - B1_Mur4 SINE Alu -1 149 3 4 1342 444 67 0 0 chr3 99330526 99330586 -60269197 + (TG)n Simple_repeat Simple_repeat 1 60 0 4 1342 328 345 41 21 chr3 99330624 99330769 -60269014 - B3 SINE B2 -68 148 1 4 1342 862 236 65 10 chr3 99330797 99330998 -60268785 + B3 SINE B2 3 214 -2 4 1342 249 362 35 28 chr3 99331742 99331887 -60267896 - MLT1A1 LTR MaLR 0 408 263 4 1342 1490 237 22 8 chr3 99332627 99332989 -60266794 + RMER20A LTR ERVK 150 516 0 4 1342 291 233 32 53 chr3 99333009 99333104 -60266679 - MLT1A1 LTR MaLR -313 95 3 4 1342 195 42 0 0 chr3 99333218 99333242 -60266541 + (CAAAA)n Simple_repeat Simple_repeat 5 28 0 4 1342 426 39 0 0 chr3 99333276 99333328 -60266455 + (GA)n Simple_repeat Simple_repeat 1 52 0 4 1342 828 163 0 33 chr3 99333863 99334047 -60265736 + CT-rich Low_complexity Low_complexity 3 180 0 4 1342 1524 171 3 10 chr3 99335027 99335328 -60264455 + L1Md_F LINE L1 98 396 -6123 4 1342 12271 63 1 5 chr3 99335329 99337011 -60262772 + L1Md_F2 LINE L1 3911 5585 -298 4 1342 7495 69 1 16 chr3 99337012 99338013 -60261770 + L1Md_F2 LINE L1 5587 6572 -10 4 1342 297 0 0 0 chr3 99338049 99338082 -60261701 + (TG)n Simple_repeat Simple_repeat 1 33 0 4 1342 1056 221 14 22 chr3 99338178 99338455 -60261328 + L1_Mur3 LINE L1 5012 5286 -594 4 1342 726 209 5 76 chr3 99338454 99338651 -60261132 + Lx7 LINE L1 7006 7188 -508 4 1342 848 127 6 46 chr3 99338663 99338837 -60260946 + RMER17C LTR ERVK 1 167 -243 4 1342 1347 189 104 83 chr3 99338853 99339263 -60260520 + RMER17B LTR ERVK 1 421 -537 4 1342 387 0 0 0 chr3 99339263 99339306 -60260477 + (TC)n Simple_repeat Simple_repeat 2 44 0 4 1342 1347 189 104 83 chr3 99339306 99339327 -60260456 + RMER17B LTR ERVK 422 441 -517 4 1342 1672 248 111 42 chr3 99339336 99339832 -60259951 + RMER13B LTR ERVK 272 801 -107 4 1342 1090 188 8 65 chr3 99339894 99340246 -60259537 + RMER17C LTR ERVK 79 410 0 4 1342 1525 220 43 59 chr3 99340246 99340754 -60259029 + Lx7 LINE L1 7197 7696 0 4 1342 621 40 0 0 chr3 99341096 99341172 -60258611 + (GA)n Simple_repeat Simple_repeat 2 77 0 4 1342 241 221 118 20 chr3 99341902 99342054 -60257729 - RMER10A LTR ERVL -16 426 260 4 1342 882 125 6 28 chr3 99342065 99342246 -60257537 + GA-rich Low_complexity Low_complexity 1 177 0 4 1342 402 295 89 37 chr3 99342260 99342531 -60257252 - RMER10A LTR ERVL -144 298 14 4 1342 898 352 99 57 chr3 99342559 99343317 -60256466 - MTE-int LTR MaLR -307 1273 477 4 1342 1067 61 24 0 chr3 99343317 99343482 -60256301 + (TTC)n Simple_repeat Simple_repeat 3 171 0 4 1342 898 352 99 57 chr3 99343482 99343518 -60256265 - MTE-int LTR MaLR -1104 476 445 4 1342 424 150 26 17 chr3 99343523 99343638 -60256145 + CT-rich Low_complexity Low_complexity 2 117 0 4 1342 2078 169 12 75 chr3 99343796 99344212 -60255571 + RMER10B LTR ERVL 9 398 0 4 1342 1933 111 156 36 chr3 99344375 99344740 -60255043 - RLTR23 LTR ERV1 0 430 22 4 1342 199 389 0 11 chr3 99345378 99345466 -60254317 + L2b LINE L2 3284 3421 -5 4 1342 1829 127 229 6 chr3 99345589 99345938 -60253845 - RLTR23 LTR ERV1 -3 427 1 4 1342 312 27 0 0 chr3 99346035 99346072 -60253711 + (TG)n Simple_repeat Simple_repeat 2 38 0 4 1342 557 266 23 65 chr3 99346233 99346450 -60253333 - Lx9 LINE L1 -385 7259 7052 4 1342 306 0 0 0 chr3 99346811 99346845 -60252938 + (TC)n Simple_repeat Simple_repeat 1 34 0 4 1342 441 0 0 0 chr3 99346845 99346893 -60252890 + (CA)n Simple_repeat Simple_repeat 1 49 0 4 1342 3105 308 44 45 chr3 99346935 99347998 -60251785 + MTE-int LTR MaLR 116 1177 -403 4 1342 335 266 104 49 chr3 99348073 99348302 -60251481 + MTEa LTR MaLR 133 377 -2 4 1342 1991 145 15 6 chr3 99349004 99349330 -60250453 + ORR1A4 LTR MaLR 1 329 0 4 1342 336 336 47 39 chr3 99349356 99349762 -60250021 + L1M2 LINE L1 2155 2563 -4286 4 1342 365 265 84 34 chr3 99349931 99350222 -60249561 + L1M2 LINE L1 2858 3157 -3685 4 1342 342 274 25 80 chr3 99350287 99350525 -60249258 + L1M2 LINE L1 5083 5307 -1535 4 1342 303 287 73 8 chr3 99350529 99350652 -60249131 + L1M2 LINE L1 5430 5560 -1285 4 1342 548 240 102 21 chr3 99350671 99350904 -60248879 + L1M2 LINE L1 5945 6192 -807 4 1342 219 128 85 0 chr3 99351603 99351650 -60248133 + (TATAA)n Simple_repeat Simple_repeat 5 55 0 4 1343 592 261 29 3 chr3 99353379 99353518 -60246265 + B3A SINE B2 9 165 -30 4 1343 660 93 0 0 chr3 99353518 99353615 -60246168 + (CA)n Simple_repeat Simple_repeat 2 98 0 4 1343 351 270 126 24 chr3 99353615 99353642 -60246141 + B2_Mm2 SINE B2 166 192 -3 4 1343 441 226 73 0 chr3 99353661 99353785 -60245998 + Lx6 LINE L1 7301 7433 -27 4 1343 21 0 0 0 chr3 99353888 99353909 -60245874 + AT_rich Low_complexity Low_complexity 1 21 0 5 1343 1333 245 56 9 chr3 99354103 99354412 -60245371 + MTE2b LTR MaLR 18 336 -43 5 1343 214 73 49 0 chr3 99354412 99354453 -60245330 + (TTG)n Simple_repeat Simple_repeat 3 45 0 5 1343 1333 245 56 9 chr3 99354453 99354485 -60245298 + MTE2b LTR MaLR 337 375 -4 5 1343 273 297 143 8 chr3 99355415 99355534 -60244249 + LTR16C LTR ERVL 347 481 -8 5 1343 839 293 64 81 chr3 99355580 99355937 -60243846 - MTD LTR MaLR -68 351 1 5 1343 1433 186 97 63 chr3 99356496 99356858 -60242925 + ORR1D1 LTR MaLR 1 374 0 5 1343 213 323 0 0 chr3 99357140 99357202 -60242581 + L2a LINE L2 3364 3425 -1 5 1343 707 256 55 0 chr3 99357460 99357659 -60242124 + B3 SINE B2 1 210 -6 5 1343 348 276 86 0 chr3 99357899 99358015 -60241768 + PB1 SINE Alu 2 127 0 5 1343 1847 88 127 4 chr3 99358213 99358488 -60241295 - RLTR27 LTR ERVK 0 309 1 5 1343 1037 80 0 0 chr3 99358570 99358707 -60241076 - B1_Mus1 SINE Alu -10 138 2 5 1343 3715 196 53 34 chr3 99359015 99359898 -60239885 - Lx2B LINE L1 0 7000 6101 5 1343 399 41 0 0 chr3 99360536 99360585 -60239198 + (TTTTA)n Simple_repeat Simple_repeat 2 50 0 5 1343 523 245 104 123 chr3 99360725 99361140 -60238643 - L1MA5 LINE L1 -21 6279 5873 5 1343 976 225 126 11 chr3 99361169 99361480 -60238303 + MTD LTR MaLR 3 365 -35 5 1343 1595 143 124 27 chr3 99361483 99361814 -60237969 - ORR1B2 LTR MaLR -4 363 1 5 1343 254 287 33 44 chr3 99361864 99362046 -60237737 - L1MA5 LINE L1 -477 5823 5644 5 1343 378 0 0 0 chr3 99362072 99362114 -60237669 + (TCCCC)n Simple_repeat Simple_repeat 1 42 0 5 1343 720 0 0 0 chr3 99362114 99362193 -60237590 + (TTTTC)n Simple_repeat Simple_repeat 2 81 0 5 1343 297 232 70 23 chr3 99362200 99362328 -60237455 - L1MA5 LINE L1 -1464 4676 4543 5 1343 313 248 111 21 chr3 99362412 99362556 -60237227 - L1MCa LINE L1 -2725 3596 3440 5 1343 245 295 32 32 chr3 99362912 99363038 -60236745 - L1MCa LINE L1 -6043 465 340 5 1343 1281 184 9 0 chr3 99363163 99363386 -60236397 + URR1A DNA MER1_type 2 226 0 5 1343 183 0 0 119 chr3 99363714 99363756 -60236027 + (TTTTTG)n Simple_repeat Simple_repeat 6 42 0 5 1343 1131 43 43 0 chr3 99363756 99363897 -60235886 - B1_Mm SINE Alu 0 147 1 5 1343 1219 321 59 59 chr3 99363897 99364563 -60235220 - Lx8 LINE L1 -552 6921 6256 5 1343 1604 320 36 26 chr3 99365181 99365797 -60233986 - RMER15-int LTR ERVL -3294 1705 1084 5 1343 190 349 45 0 chr3 99366399 99366465 -60233318 - MER5A DNA MER1_type -49 140 72 5 1343 1170 224 79 76 chr3 99368367 99368507 -60231276 - Lx7 LINE L1 -16 7680 7547 5 1343 221 0 0 33 chr3 99368507 99368537 -60231246 + (ATG)n Simple_repeat Simple_repeat 2 30 0 5 1343 1170 224 79 76 chr3 99368537 99368841 -60230942 - Lx7 LINE L1 -150 7546 7237 5 1343 264 56 0 0 chr3 99368839 99368875 -60230908 + L1Md_F2 LINE L1 5981 6016 -566 5 1343 26 0 0 0 chr3 99369357 99369383 -60230400 + AT_rich Low_complexity Low_complexity 1 26 0 5 1343 351 0 0 0 chr3 99369518 99369557 -60230226 + (CATA)n Simple_repeat Simple_repeat 4 42 0 5 1343 4016 83 4 6 chr3 99369609 99370152 -60229631 - L1_Mus1 LINE L1 0 6567 6026 5 1343 22 0 0 0 chr3 99371198 99371220 -60228563 + AT_rich Low_complexity Low_complexity 1 22 0 5 1343 542 297 44 89 chr3 99371590 99371769 -60228014 + B3A SINE B2 1 177 -21 5 1343 342 0 0 0 chr3 99371769 99371807 -60227976 + (CA)n Simple_repeat Simple_repeat 2 39 0 5 1343 542 297 44 89 chr3 99371807 99371830 -60227953 + B3A SINE B2 178 194 -4 5 1343 2680 46 0 0 chr3 99371836 99372164 -60227619 + L1Md_A LINE L1 6253 6580 -2 5 1343 750 141 0 0 chr3 99372460 99372588 -60227195 + (TATATG)n Simple_repeat Simple_repeat 5 132 0 5 1343 2422 214 58 7 chr3 99373364 99373962 -60225821 + Lx9 LINE L1 7016 7644 0 5 1343 688 270 64 20 chr3 99374429 99374633 -60225150 + MER2 DNA MER2_type 117 329 -16 5 1343 29 0 0 0 chr3 99374643 99374672 -60225111 + AT_rich Low_complexity Low_complexity 1 29 0 5 1343 1661 239 111 19 chr3 99374679 99375221 -60224562 - Lx3C LINE L1 -11 6965 6374 5 1343 260 330 60 15 chr3 99376355 99376555 -60223228 + L1ME5 LINE L1 5726 5934 -260 5 1343 405 0 0 0 chr3 99377219 99377264 -60222519 + (CA)n Simple_repeat Simple_repeat 1 45 0 5 1343 204 247 178 0 chr3 99378092 99378165 -60221618 + MIRc SINE MIR 51 136 -132 5 1343 281 296 61 12 chr3 99378787 99378869 -60220914 + MIR SINE MIR 37 122 -140 5 1343 216 370 17 69 chr3 99378904 99379020 -60220763 + MIR SINE MIR 117 226 -36 5 1343 274 314 31 60 chr3 99379131 99379288 -60220495 + Charlie4z DNA MER1_type 1 158 -9 5 1343 204 40 0 0 chr3 99380153 99380178 -60219605 + (TG)n Simple_repeat Simple_repeat 2 26 0 5 1343 1082 113 31 10 chr3 99380425 99380621 -60219162 + Lx2A1 LINE L1 6809 7008 0 5 1343 387 0 0 0 chr3 99381571 99381614 -60218169 + (TG)n Simple_repeat Simple_repeat 2 44 0 5 1343 227 371 30 22 chr3 99385782 99385917 -60213866 - MER105 DNA DNA -2 202 67 5 1343 22 56 0 0 chr3 99385919 99385955 -60213828 + AT_rich Low_complexity Low_complexity 1 36 0 5 1343 213 165 51 34 chr3 99385982 99386158 -60213625 + (TA)n Simple_repeat Simple_repeat 2 180 0 5 1343 201 196 0 0 chr3 99387158 99387204 -60212579 + (CA)n Simple_repeat Simple_repeat 1 46 0 5 1343 606 122 0 0 chr3 99387766 99387873 -60211910 + (TG)n Simple_repeat Simple_repeat 2 108 0 5 1343 392 266 84 110 chr3 99388158 99388672 -60211111 + L1MEc LINE L1 772 1276 -5124 5 1343 722 169 254 6 chr3 99388672 99388845 -60210938 + B3 SINE B2 1 216 0 5 1343 392 266 84 110 chr3 99388845 99389022 -60210761 + L1MEc LINE L1 1277 1445 -4955 5 1343 423 168 0 0 chr3 99389244 99389339 -60210444 + (TG)n Simple_repeat Simple_repeat 2 96 0 5 1343 199 29 0 79 chr3 99389479 99389517 -60210266 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 5 1343 252 382 0 0 chr3 99389738 99389814 -60209969 + MTEa LTR MaLR 19 94 -285 5 1343 515 255 79 92 chr3 99389872 99390036 -60209747 + MTEa LTR MaLR 206 367 -12 5 1343 495 299 118 51 chr3 99390072 99390622 -60209161 + L1MEc LINE L1 3248 3834 -2485 5 1343 377 316 132 64 chr3 99390768 99391018 -60208765 + L1MD LINE L1 3840 4106 -2040 5 1343 465 103 0 0 chr3 99391262 99391330 -60208453 + (TC)n Simple_repeat Simple_repeat 1 68 0 5 1343 189 0 0 0 chr3 99391330 99391351 -60208432 + (TTCC)n Simple_repeat Simple_repeat 4 24 0 5 1343 2177 117 35 3 chr3 99391370 99391713 -60208070 - L1_Mus4 LINE L1 -7 6629 6276 5 1343 31 26 0 0 chr3 99392662 99392700 -60207083 + AT_rich Low_complexity Low_complexity 1 38 0 5 1343 21 36 0 0 chr3 99392745 99392773 -60207010 + AT_rich Low_complexity Low_complexity 1 28 0 5 1343 351 0 0 0 chr3 99393303 99393342 -60206441 + (TG)n Simple_repeat Simple_repeat 1 39 0 5 1343 504 0 0 0 chr3 99393342 99393397 -60206386 + (GA)n Simple_repeat Simple_repeat 1 56 0 5 1343 535 303 17 0 chr3 99393402 99393577 -60206206 - B3A SINE B2 -18 180 3 5 1343 349 305 16 25 chr3 99393583 99393704 -60206079 - L1MC4 LINE L1 -88 7794 7675 5 1343 433 318 82 58 chr3 99393876 99394598 -60205185 - L1MC4 LINE L1 -600 7442 6704 5 1343 321 26 0 0 chr3 99394598 99394636 -60205147 + (TG)n Simple_repeat Simple_repeat 2 39 0 5 1343 420 296 34 27 chr3 99394771 99394920 -60204863 - MER90 LTR ERV1 -178 397 248 5 1343 1439 227 82 15 chr3 99395037 99395377 -60204406 - ORR1D2 LTR MaLR 0 370 8 5 1343 258 236 153 0 chr3 99395456 99395528 -60204255 - MLT1A LTR MaLR -261 113 31 5 1343 283 289 12 134 chr3 99395526 99395690 -60204093 - MER90 LTR ERV1 -353 222 79 5 1343 372 273 20 0 chr3 99396345 99396444 -60203339 + MamRep434 DNA TcMar 1 101 -325 5 1343 210 37 0 0 chr3 99396531 99396558 -60203225 + (CAAAAA)n Simple_repeat Simple_repeat 2 28 0 5 1343 277 323 50 0 chr3 99396783 99396882 -60202901 - PB1D7 SINE Alu -10 110 7 5 1343 210 273 30 15 chr3 99396883 99396950 -60202833 + CT-rich Low_complexity Low_complexity 4 71 0 5 1343 212 261 31 0 chr3 99397865 99397930 -60201853 + GA-rich Low_complexity Low_complexity 2 68 0 5 1343 225 0 0 0 chr3 99398291 99398316 -60201467 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 5 1343 458 47 93 0 chr3 99398589 99398675 -60201108 + (TTCCC)n Simple_repeat Simple_repeat 3 96 0 5 1343 337 288 112 28 chr3 99398675 99398818 -60200965 - HAL1-3A_ME LINE L1 -420 2438 2284 5 1343 703 9 90 0 chr3 99398819 99398930 -60200853 + (TTCCC)n Simple_repeat Simple_repeat 1 121 0 5 1343 309 354 30 23 chr3 99399311 99399444 -60200339 + RMER15 LTR ERVL 352 485 -90 5 1343 216 314 112 30 chr3 99399879 99400076 -60199707 - L2 LINE L2 -620 2799 2587 5 1343 189 356 58 0 chr3 99400772 99400859 -60198924 - MIR SINE MIR -12 250 159 5 1343 306 289 111 14 chr3 99401291 99401435 -60198348 - MIR SINE MIR -91 171 14 5 1343 729 286 36 29 chr3 99401921 99402227 -60197556 - L1MB5 LINE L1 -75 6099 5792 5 1343 234 245 0 0 chr3 99402313 99402362 -60197421 + Lx8 LINE L1 7176 7224 -249 5 1343 640 288 56 41 chr3 99403090 99403380 -60196403 - Lx9 LINE L1 -7 7637 7342 5 1343 324 0 0 0 chr3 99403380 99403416 -60196367 + (TC)n Simple_repeat Simple_repeat 2 37 0 5 1343 640 288 56 41 chr3 99403416 99403588 -60196195 - Lx9 LINE L1 -303 7341 7168 5 1343 888 260 124 9 chr3 99403599 99404061 -60195722 + L1_Mur3 LINE L1 4104 4650 -1496 5 1343 3079 55 8 5 chr3 99404117 99404504 -60195279 + RLTR10 LTR ERVK 1 388 -2 5 1343 1226 56 6 0 chr3 99404506 99404667 -60195116 + MMERVK10C-int LTR ERVK 1 162 -7419 5 1343 539 159 54 102 chr3 99404667 99404814 -60194969 + RLTR10A LTR ERVK 272 411 0 5 1343 552 95 0 0 chr3 99405319 99405403 -60194380 + (TG)n Simple_repeat Simple_repeat 2 85 0 5 1343 636 245 70 35 chr3 99407227 99407426 -60192357 - B3 SINE B2 -10 206 1 5 1343 703 300 21 53 chr3 99407477 99407857 -60191926 - L1MA7 LINE L1 -97 6194 5827 5 1343 377 299 75 39 chr3 99407865 99408147 -60191636 + L1MA7 LINE L1 5541 5832 -459 5 1343 198 327 78 43 chr3 99408180 99408295 -60191488 + MIRb SINE MIR 118 236 -32 5 1343 613 110 18 0 chr3 99408358 99408467 -60191316 + (TA)n Simple_repeat Simple_repeat 2 112 0 5 1343 4051 127 50 23 chr3 99409397 99410059 -60189724 - Lx3C LINE L1 -2 6974 6295 5 1343 32650 94 11 14 chr3 99410059 99416420 -60183363 - L1Md_F2 LINE L1 -1 6581 244 5 1343 860 161 30 0 chr3 99416429 99416628 -60183155 - MusHAL1 LINE L1 -2570 784 580 5 1343 39368 6 0 0 chr3 99416634 99422986 -60176797 - L1Md_A LINE L1 0 6582 230 5 1343 1388 189 2 116 chr3 99422986 99423215 -60176568 - L1VL4 LINE L1 -5471 831 612 6 1343 195 42 0 0 chr3 99423215 99423239 -60176544 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 6 1343 1388 189 2 116 chr3 99423239 99423423 -60176360 - L1VL4 LINE L1 -5691 611 465 6 1343 562 139 10 10 chr3 99423678 99423780 -60176003 + L1_Mur2 LINE L1 5318 5419 -458 6 1343 2061 182 11 40 chr3 99423789 99424161 -60175622 + Lx5 LINE L1 6685 7045 -5 6 1343 346 340 91 26 chr3 99424265 99424419 -60175364 + MLT1G1 LTR MaLR 100 263 -316 6 1343 204 371 22 0 chr3 99424808 99424897 -60174886 + (TATG)n Simple_repeat Simple_repeat 4 94 0 6 1343 234 240 0 0 chr3 99424853 99424903 -60174880 + (TG)n Simple_repeat Simple_repeat 2 51 0 6 1343 1000 212 14 19 chr3 99425013 99425229 -60174554 - B3 SINE B2 0 216 2 6 1343 31 0 0 0 chr3 99425424 99425455 -60174328 + AT_rich Low_complexity Low_complexity 1 31 0 6 1343 861 164 21 0 chr3 99425799 99425939 -60173844 - B1_Mur4 SINE Alu 0 150 8 6 1343 447 252 134 0 chr3 99426757 99426884 -60172899 + L1MC LINE L1 4037 4180 -1966 6 1343 349 312 102 0 chr3 99426877 99427005 -60172778 - Lx8 LINE L1 -157 7316 7176 6 1343 293 98 0 0 chr3 99427122 99427163 -60172620 - U2 snRNA snRNA -147 41 1 6 1343 751 325 73 14 chr3 99427218 99427574 -60172209 + Arthur1B DNA Tip100 454 830 -395 6 1343 857 244 40 31 chr3 99427612 99427840 -60171943 - Lx7 LINE L1 -734 6962 6733 6 1343 4516 215 63 14 chr3 99427861 99428921 -60170862 + Lx7 LINE L1 6210 7321 -375 6 1343 990 281 164 22 chr3 99428948 99429350 -60170433 + RLTR16 LTR ERVK 5 463 -42 6 1343 1112 279 99 28 chr3 99429462 99429816 -60169967 + MTEa LTR MaLR 1 379 0 6 1343 831 305 57 14 chr3 99429817 99430035 -60169748 - L1M3 LINE L1 -705 5466 5242 6 1343 1945 242 27 68 chr3 99430035 99430672 -60169111 + RMER19C LTR ERVK 1 611 0 6 1343 831 279 72 22 chr3 99430672 99430946 -60168837 - L1M3 LINE L1 -899 5241 4944 6 1343 498 370 15 0 chr3 99430958 99431158 -60168625 + MLT2B1 LTR ERVL 3 205 -315 6 1343 254 311 50 71 chr3 99431430 99431622 -60168161 + MIRc SINE MIR 41 231 -37 6 1343 324 0 0 0 chr3 99432138 99432174 -60167609 + (CA)n Simple_repeat Simple_repeat 2 37 0 6 1343 548 319 52 84 chr3 99433016 99433126 -60166657 - MER2 DNA MER2_type 0 345 229 6 1343 333 0 0 0 chr3 99433126 99433163 -60166620 + (CA)n Simple_repeat Simple_repeat 2 38 0 6 1343 548 319 52 84 chr3 99433163 99433398 -60166385 - MER2 DNA MER2_type -117 228 11 6 1343 826 287 14 0 chr3 99433448 99433657 -60166126 - MTEa LTR MaLR 0 379 168 6 1343 669 250 7 0 chr3 99433656 99433792 -60165991 + B3 SINE B2 80 216 0 6 1343 251 205 29 59 chr3 99434018 99434118 -60165665 - MLT1F2 LTR MaLR -8 619 524 6 1343 513 294 54 87 chr3 99434119 99434361 -60165422 - MLT1D LTR MaLR -271 234 1 6 1343 183 42 0 0 chr3 99435854 99435878 -60163905 + (TTG)n Simple_repeat Simple_repeat 2 25 0 6 1343 180 0 0 0 chr3 99435902 99435922 -60163861 + (TG)n Simple_repeat Simple_repeat 1 20 0 6 1343 352 302 25 25 chr3 99435924 99436046 -60163737 - RSINE1 SINE B4 -22 143 22 6 1343 323 331 69 98 chr3 99437100 99437304 -60162479 - MLT1F2 LTR MaLR -23 537 340 6 1343 254 214 8 43 chr3 99437472 99437589 -60162194 + GA-rich Low_complexity Low_complexity 2 114 0 6 1343 201 303 48 57 chr3 99438827 99438932 -60160851 - MIRc SINE MIR -46 222 119 6 1343 410 0 20 0 chr3 99440391 99440441 -60159342 + (CA)n Simple_repeat Simple_repeat 2 52 0 6 1343 347 297 42 17 chr3 99440707 99440827 -60158956 - MIR SINE MIR -101 161 39 6 1343 313 172 125 19 chr3 99440827 99440925 -60158858 - MTC LTR MaLR 0 421 320 6 1343 33 43 0 0 chr3 99442488 99442535 -60157248 + AT_rich Low_complexity Low_complexity 1 47 0 6 1343 976 266 139 3 chr3 99443386 99443703 -60156080 - MLT1A0 LTR MaLR 0 365 6 6 1343 207 0 0 0 chr3 99443955 99443978 -60155805 + (TG)n Simple_repeat Simple_repeat 2 24 0 6 1343 520 318 36 16 chr3 99444165 99444357 -60155426 - B3A SINE B2 -16 200 5 6 1343 564 194 0 0 chr3 99444821 99444955 -60154828 + (TA)n Simple_repeat Simple_repeat 1 134 0 6 1343 200 343 19 19 chr3 99446007 99446111 -60153672 + MIR SINE MIR 3 106 -156 6 1343 242 359 0 28 chr3 99446210 99446316 -60153467 + MIRb SINE MIR 94 196 -72 6 1343 267 378 33 7 chr3 99446339 99446491 -60153292 + MIR SINE MIR 32 187 -75 6 1343 518 72 31 10 chr3 99446506 99446604 -60153179 + (TCTA)n Simple_repeat Simple_repeat 1 100 0 6 1343 583 235 46 26 chr3 99446606 99446759 -60153024 - RSINE1 SINE B4 -6 159 4 6 1343 768 276 107 56 chr3 99447285 99447904 -60151879 + L1ME1 LINE L1 5479 6170 -274 6 1343 273 299 21 63 chr3 99447906 99448049 -60151734 + L2 LINE L2 2836 2972 -447 6 1343 642 26 0 0 chr3 99448066 99448142 -60151641 + (TC)n Simple_repeat Simple_repeat 2 77 0 6 1343 181 389 107 0 chr3 99448268 99448399 -60151384 - L3b LINE CR1 -319 163 19 6 1343 432 82 0 0 chr3 99448671 99448732 -60151051 + (CA)n Simple_repeat Simple_repeat 1 61 0 6 1343 693 78 17 9 chr3 99449280 99449396 -60150387 - L1_Mus3 LINE L1 -2 6636 6520 6 1343 228 291 13 0 chr3 99449666 99449745 -60150038 + U2 snRNA snRNA 1 80 -108 6 1343 238 362 127 68 chr3 99449915 99450342 -60149441 + L2b LINE L2 2924 3375 0 6 1343 4963 81 11 30 chr3 99452201 99452905 -60146878 - L1_Mus2 LINE L1 0 6566 5876 6 1343 1783 82 4 0 chr3 99453097 99453341 -60146442 + L1_Mm LINE L1 5066 5310 -573 6 1343 714 231 53 28 chr3 99453440 99453612 -60146171 + B3 SINE B2 59 216 0 6 1343 234 333 102 8 chr3 99453769 99453887 -60145896 - MER5A1 DNA MER1_type -7 159 31 6 1343 328 162 38 0 chr3 99455526 99455606 -60144177 + (CATA)n Simple_repeat Simple_repeat 2 84 0 6 1343 342 0 0 0 chr3 99457028 99457066 -60142717 + (TG)n Simple_repeat Simple_repeat 1 38 0 6 1343 519 96 0 0 chr3 99458606 99458689 -60141094 + (GA)n Simple_repeat Simple_repeat 2 84 0 6 1343 322 236 0 27 chr3 99458729 99458803 -60140980 + ID SINE ID 1 72 -152 6 1343 249 281 7 117 chr3 99458803 99458874 -60140909 + BC1_Mm scRNA scRNA 1 129 -23 6 1343 6697 208 87 15 chr3 99459027 99459210 -60140573 - Lx7 LINE L1 0 7696 7450 6 1343 566 99 0 11 chr3 99459210 99459302 -60140481 + (CA)n Simple_repeat Simple_repeat 2 92 0 6 1343 6697 208 87 15 chr3 99459302 99460655 -60139128 - Lx7 LINE L1 -247 7449 6051 6 1343 246 271 200 7 chr3 99460897 99461042 -60138741 + MTEb LTR MaLR 202 374 -5 6 1343 290 397 194 0 chr3 99461106 99461405 -60138378 - L2a LINE L2 -251 3175 2819 6 1343 30 0 0 0 chr3 99461490 99461520 -60138263 + AT_rich Low_complexity Low_complexity 1 30 0 6 1343 257 132 0 0 chr3 99461847 99461885 -60137898 - L1M4 LINE L1 -607 5577 5540 6 1343 4730 219 77 40 chr3 99462240 99463468 -60136315 - Lx9 LINE L1 -1 7643 6371 6 1343 6026 29 1 1 chr3 99463560 99464274 -60135509 + L1Md_F3 LINE L1 5869 6582 -2 6 1343 332 309 102 28 chr3 99464279 99464495 -60135288 - L1M4 LINE L1 -1067 5079 4848 6 1343 301 281 107 89 chr3 99464565 99464733 -60135050 + B4A SINE B4 115 285 -7 6 1343 627 14 0 0 chr3 99464736 99464808 -60134975 + (CA)n Simple_repeat Simple_repeat 1 72 0 6 1343 926 304 118 24 chr3 99464865 99465861 -60133922 - L1M4 LINE L1 -1287 4859 3770 6 1343 512 300 297 0 chr3 99466003 99466222 -60133561 + Lx8 LINE L1 6905 7206 -267 6 1343 648 0 0 0 chr3 99466222 99466294 -60133489 + (CATATA)n Simple_repeat Simple_repeat 3 74 0 6 1343 512 300 297 0 chr3 99466294 99466357 -60133426 + Lx8 LINE L1 7207 7270 -203 6 1343 252 0 0 0 chr3 99469107 99469135 -60130648 + (T)n Simple_repeat Simple_repeat 1 28 0 6 1343 210 150 0 0 chr3 99469736 99469776 -60130007 + (A)n Simple_repeat Simple_repeat 1 40 0 6 1343 473 336 13 45 chr3 99471707 99471863 -60127920 - RSINE1 SINE B4 0 165 15 6 1343 218 331 133 44 chr3 99471869 99472049 -60127734 - MIR SINE MIR -39 223 28 6 1343 843 169 174 0 chr3 99472572 99472756 -60127027 - URR1A DNA MER1_type 0 226 11 6 1343 1210 123 51 14 chr3 99473240 99473454 -60126329 + Lx3C LINE L1 6753 6974 -2 6 1343 21094 184 51 21 chr3 99473491 99475868 -60123915 + Lx4B LINE L1 1007 3471 -2406 6 1343 423 0 0 0 chr3 99475868 99475915 -60123868 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 6 1343 21094 178 55 23 chr3 99475915 99476493 -60123290 + Lx4B LINE L1 3472 4055 -1822 6 1343 2580 36 9 12 chr3 99476493 99476825 -60122958 + L1Md_F3 LINE L1 6251 6581 -3 6 1343 21094 178 55 23 chr3 99476825 99476851 -60122932 + Lx4B LINE L1 4056 4056 -1821 6 1343 348 24 0 0 chr3 99476851 99476892 -60122891 + (GAAAA)n Simple_repeat Simple_repeat 2 42 0 6 1343 21094 207 75 45 chr3 99476892 99479551 -60120232 + Lx4B LINE L1 4056 6832 -226 6 1343 786 102 0 0 chr3 99479551 99479669 -60120114 + (TC)n Simple_repeat Simple_repeat 1 118 0 6 1343 3152 262 113 86 chr3 99479669 99479863 -60119920 + Lx4B LINE L1 6833 7020 -38 6 1343 32 57 0 0 chr3 99479908 99479961 -60119822 + AT_rich Low_complexity Low_complexity 1 53 0 6 1343 1434 124 4 0 chr3 99480864 99481089 -60118694 - Lx2 LINE L1 -6 6991 6766 6 1343 2787 40 12 0 chr3 99481089 99481435 -60118348 + L1_Mus4 LINE L1 5622 5971 -665 6 1343 968 73 7 0 chr3 99481437 99481573 -60118210 + L1_Mus4 LINE L1 6238 6374 -262 6 1343 237 309 24 0 chr3 99481755 99481839 -60117944 + B3 SINE B2 123 208 -8 6 1343 425 111 297 20 chr3 99482301 99482332 -60117451 - RLTR20B3 LTR ERVK -62 515 471 6 1343 315 0 0 0 chr3 99482332 99482367 -60117416 + (CA)n Simple_repeat Simple_repeat 2 36 0 6 1343 579 15 0 0 chr3 99482367 99482434 -60117349 + (GA)n Simple_repeat Simple_repeat 2 69 0 6 1343 425 111 297 20 chr3 99482434 99482502 -60117281 - RLTR20B3 LTR ERVK -107 470 388 6 1343 1765 64 41 8 chr3 99482503 99482769 -60117014 - MYSERV16_I-int LTR ERVK -976 1350 1076 6 1343 425 264 73 55 chr3 99482770 99482975 -60116808 - RLTR20B3 LTR ERVK -204 237 20 6 1343 392 315 72 15 chr3 99483128 99483349 -60116434 - L1MC1 LINE L1 -35 6309 6073 6 1343 225 0 0 0 chr3 99483515 99483540 -60116243 + (TTTG)n Simple_repeat Simple_repeat 4 28 0 6 1344 1685 185 40 17 chr3 99484448 99484795 -60114988 - MT2B LTR ERVL -17 584 230 6 1344 497 136 0 74 chr3 99484771 99484866 -60114917 - MT2B LTR ERVL -513 88 1 6 1344 1683 294 120 18 chr3 99485173 99486157 -60113626 - L1M2 LINE L1 -980 5163 4080 6 1344 621 263 29 140 chr3 99486221 99486516 -60113267 - ORR1D2 LTR MaLR -30 349 52 7 1344 1487 283 74 50 chr3 99486765 99487319 -60112464 + Lx7 LINE L1 6456 7022 -674 7 1344 423 360 18 47 chr3 99487677 99487846 -60111937 - RSINE1 SINE B4 0 165 2 7 1344 901 57 0 0 chr3 99487919 99488042 -60111741 + L1Md_A LINE L1 6448 6570 -12 7 1344 216 0 0 0 chr3 99488237 99488261 -60111522 + (TG)n Simple_repeat Simple_repeat 2 25 0 7 1344 227 349 0 0 chr3 99488262 99488328 -60111455 - B4A SINE B4 0 292 227 7 1344 3082 228 71 42 chr3 99488599 99489202 -60110581 + Lx6 LINE L1 6696 7339 -121 7 1344 1225 82 70 27 chr3 99489202 99489389 -60110394 + B2_Mm2 SINE B2 1 195 0 7 1344 3082 228 71 42 chr3 99489389 99489528 -60110255 + Lx6 LINE L1 7340 7460 0 7 1344 333 305 25 70 chr3 99489593 99489823 -60109960 - MLT1H LTR MaLR -24 525 327 7 1344 398 230 63 56 chr3 99489914 99490057 -60109726 - MLT1H LTR MaLR -383 166 23 7 1344 423 0 0 0 chr3 99490106 99490153 -60109630 + (TG)n Simple_repeat Simple_repeat 2 48 0 7 1344 418 291 53 84 chr3 99492051 99492276 -60107507 + MER96B DNA hAT 4 221 -196 7 1344 402 341 120 39 chr3 99492374 99492731 -60107052 - L2 LINE L2 -337 3082 2697 7 1344 1946 199 76 13 chr3 99492736 99493132 -60106651 + MTC LTR MaLR 1 421 0 7 1344 360 0 0 0 chr3 99493355 99493395 -60106388 + (CA)n Simple_repeat Simple_repeat 1 40 0 7 1344 360 0 0 0 chr3 99493395 99493434 -60106349 + (GA)n Simple_repeat Simple_repeat 2 41 0 7 1344 249 383 53 23 chr3 99493956 99494127 -60105656 - MIR SINE MIR -68 194 19 7 1344 1200 42 7 0 chr3 99494236 99494380 -60105403 - B1_Mus1 SINE Alu -2 146 2 7 1344 249 281 48 12 chr3 99495347 99495430 -60104353 - MIR SINE MIR -78 130 45 7 1344 293 342 0 0 chr3 99495578 99495654 -60104129 + ID4 SINE ID 3 78 -5 7 1344 7726 61 5 1 chr3 99495809 99496784 -60102999 - L1_Mus2 LINE L1 0 6566 5588 7 1344 332 273 31 8 chr3 99496796 99496925 -60102858 + Lx3A LINE L1 6850 6981 0 7 1344 993 265 87 13 chr3 99496933 99496986 -60102797 - L1M2 LINE L1 -1822 4321 4268 7 1344 218 32 32 0 chr3 99496986 99497017 -60102766 + (TTTG)n Simple_repeat Simple_repeat 4 35 0 7 1344 993 265 87 13 chr3 99497017 99497353 -60102430 - L1M2 LINE L1 -1876 4267 3905 7 1344 195 288 0 0 chr3 99497557 99497616 -60102167 - MIRc SINE MIR -180 88 30 7 1344 309 368 45 0 chr3 99497662 99497795 -60101988 + MIR3 SINE MIR 64 202 -6 7 1344 218 271 0 0 chr3 99498524 99498572 -60101211 + (CA)n Simple_repeat Simple_repeat 2 49 0 7 1344 239 317 56 24 chr3 99499021 99499147 -60100636 - MIR3 SINE MIR -2 206 77 7 1344 287 286 101 23 chr3 99499396 99499525 -60100258 + MIRb SINE MIR 66 204 -64 7 1344 190 81 54 0 chr3 99499827 99499864 -60099919 + (CAAAAA)n Simple_repeat Simple_repeat 4 42 0 7 1344 820 39 0 0 chr3 99499896 99500000 -60099783 + B1_Mm SINE Alu 1 104 -43 7 1344 249 24 47 47 chr3 99500000 99500043 -60099740 + B1_Mur4 SINE Alu 108 150 0 1 1344 943 315 41 69 chr3 99500048 99500263 -60099520 + L1MA4 LINE L1 5238 5474 -826 2 1344 216 0 0 0 chr3 99500263 99500287 -60099496 + (CA)n Simple_repeat Simple_repeat 2 25 0 3 1344 943 312 44 69 chr3 99500287 99500314 -60099469 + L1MA4 LINE L1 5475 5492 -808 2 1344 245 51 0 25 chr3 99500314 99500354 -60099429 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 4 1344 943 312 44 69 chr3 99500354 99500836 -60098947 + L1MA4 LINE L1 5493 5972 -328 2 1344 1093 101 48 48 chr3 99501145 99501333 -60098450 - B2_Mm2 SINE B2 -6 189 2 5 1344 357 219 10 120 chr3 99501336 99501544 -60098239 - L1M2 LINE L1 -2877 3266 3082 6 1344 370 309 58 24 chr3 99501616 99501822 -60097961 - L1MEg LINE L1 -3366 2780 2568 7 1344 327 49 0 0 chr3 99502340 99502381 -60097402 + (TC)n Simple_repeat Simple_repeat 1 41 0 8 1344 438 20 0 0 chr3 99502383 99502434 -60097349 + (TCTA)n Simple_repeat Simple_repeat 2 52 0 9 1344 429 20 0 0 chr3 99502436 99502486 -60097297 + (TCCA)n Simple_repeat Simple_repeat 4 53 0 1 1344 266 321 0 0 chr3 99502569 99502625 -60097158 - B4A SINE B4 -234 58 3 1 1344 2159 175 110 25 chr3 99502692 99503209 -60096574 - RLTR31_Mm LTR ERVK 0 561 1 1 1344 289 323 46 42 chr3 99503299 99503561 -60096222 - L1MEg LINE L1 -4446 1796 1534 7 1344 810 98 107 0 chr3 99503692 99503814 -60095969 - RMER6C LTR ERVK 0 690 556 1 1344 313 321 11 77 chr3 99503846 99503937 -60095846 - B4A SINE B4 -207 85 1 1 1344 207 0 0 0 chr3 99504033 99504056 -60095727 + (TTG)n Simple_repeat Simple_repeat 2 24 0 1 1344 889 109 7 21 chr3 99504056 99504197 -60095586 - B1_Mus1 SINE Alu -8 140 2 1 1344 614 192 0 0 chr3 99504232 99504336 -60095447 - B1_Mus2 SINE Alu -5 142 39 1 1344 263 201 0 54 chr3 99504387 99504464 -60095319 - MTD LTR MaLR -3 418 294 1 1344 222 189 0 0 chr3 99504446 99504483 -60095300 - B1F2 SINE Alu -111 38 2 1 1344 363 182 0 0 chr3 99504782 99504864 -60094919 + T-rich Low_complexity Low_complexity 18 99 0 2 1344 1099 96 7 0 chr3 99504864 99505010 -60094773 - B1_Mus2 SINE Alu 0 147 1 2 1344 363 182 0 0 chr3 99505010 99505026 -60094757 + T-rich Low_complexity Low_complexity 2 17 0 2 1344 1754 222 53 3 chr3 99505559 99505915 -60093868 - MTD LTR MaLR -12 407 34 2 1344 32706 27 0 0 chr3 99507111 99511662 -60088121 - L1Md_T LINE L1 0 6582 2054 2 1344 955 0 0 9 chr3 99511662 99511770 -60088013 - U6 snRNA snRNA 0 107 1 2 1344 242 371 10 0 chr3 99512555 99512652 -60087131 + 7SK RNA RNA 18 115 -216 2 1344 656 297 57 25 chr3 99515376 99515708 -60084075 - MTEa LTR MaLR 0 379 3 2 1344 1821 302 13 56 chr3 99515719 99516259 -60083524 - MTEa-int LTR MaLR -9 1571 1055 2 1344 818 308 168 3 chr3 99516245 99516548 -60083235 - MTEa-int LTR MaLR -1225 355 3 2 1344 216 103 34 17 chr3 99516576 99516635 -60083148 + A-rich Low_complexity Low_complexity 1 60 0 2 1344 408 311 55 11 chr3 99516666 99516941 -60082842 - MTEa LTR MaLR -4 375 6 2 1344 1057 304 19 31 chr3 99518511 99518996 -60080787 + L1M2 LINE L1 5303 5781 -519 2 1344 234 203 67 17 chr3 99518996 99519056 -60080727 + Charlie6 DNA MER1_type 2389 2451 -1049 3 1344 254 296 34 9 chr3 99519685 99519790 -60079993 + MIR SINE MIR 74 177 -85 3 1344 537 16 0 0 chr3 99520850 99520912 -60078871 + (GA)n Simple_repeat Simple_repeat 1 62 0 3 1344 1644 171 104 23 chr3 99520913 99521297 -60078486 - RMER10A LTR ERVL -27 415 1 3 1344 588 111 0 0 chr3 99521848 99521938 -60077845 + (TA)n Simple_repeat Simple_repeat 1 90 0 3 1344 387 0 0 0 chr3 99521938 99521980 -60077803 + (GA)n Simple_repeat Simple_repeat 2 44 0 3 1344 209 325 12 0 chr3 99522408 99522491 -60077292 + A-rich Low_complexity Low_complexity 4 87 0 3 1344 26 50 0 0 chr3 99523674 99523714 -60076069 + AT_rich Low_complexity Low_complexity 1 40 0 3 1344 2089 112 9 59 chr3 99523865 99524205 -60075578 + ORR1A2 LTR MaLR 1 323 -4 3 1344 23 0 0 0 chr3 99524847 99524870 -60074913 + AT_rich Low_complexity Low_complexity 1 23 0 3 1344 23 33 0 0 chr3 99524887 99524917 -60074866 + AT_rich Low_complexity Low_complexity 1 30 0 4 1344 2536 164 111 28 chr3 99525842 99526374 -60073409 + RMER4B LTR ERVK 10 585 0 4 1344 366 260 104 65 chr3 99526832 99527156 -60072627 - MTEb LTR MaLR 0 379 5 4 1344 1608 289 57 22 chr3 99527194 99528153 -60071630 - L1MA6 LINE L1 -315 5985 4999 4 1344 209 189 42 0 chr3 99528247 99528342 -60071441 + (TAGA)n Simple_repeat Simple_repeat 4 102 0 4 1344 886 213 11 11 chr3 99528343 99528533 -60071250 - Lx9 LINE L1 -167 7477 7288 4 1344 191 36 0 35 chr3 99528546 99528575 -60071208 + (TTTTTG)n Simple_repeat Simple_repeat 2 29 0 4 1344 497 196 0 21 chr3 99528575 99528669 -60071114 - Lx9 LINE L1 -363 7281 7190 4 1344 1190 296 28 95 chr3 99528667 99529427 -60070356 - L1MA6 LINE L1 -1098 5045 4337 4 1344 369 0 0 0 chr3 99529492 99529533 -60070250 + (TG)n Simple_repeat Simple_repeat 1 41 0 4 1344 236 224 158 0 chr3 99529545 99529621 -60070162 - L1MA6 LINE L1 -1909 4234 4147 4 1344 356 239 161 0 chr3 99529662 99529792 -60069991 + L1MB2 LINE L1 6021 6171 0 4 1344 234 296 32 87 chr3 99529898 99530083 -60069700 + L1MC LINE L1 5430 5604 -2278 4 1344 833 304 39 9 chr3 99530199 99530534 -60069249 + MER2 DNA MER2_type 1 345 0 5 1344 566 271 88 57 chr3 99530717 99530909 -60068874 - B3A SINE B2 0 198 1 5 1344 6288 85 3 23 chr3 99532117 99533748 -60066035 + L1VL4 LINE L1 188 1785 -1774 5 1344 1801 80 14 7 chr3 99533741 99534017 -60065766 + L1VL4 LINE L1 3282 3559 0 5 1344 324 320 130 24 chr3 99534550 99534758 -60065025 - MER97c DNA MER1_type? -731 359 130 5 1344 272 269 61 49 chr3 99535219 99535383 -60064400 - L1MEa LINE L1 -5434 766 601 5 1344 284 341 83 30 chr3 99535533 99535763 -60064020 - L1MEa LINE L1 -5645 449 208 5 1344 738 249 26 52 chr3 99536062 99536253 -60063530 - MLT1B LTR MaLR -4 386 201 5 1344 274 200 0 0 chr3 99536616 99536661 -60063122 - B3 SINE B2 -139 77 33 5 1344 635 300 59 70 chr3 99537249 99537536 -60062247 - B4 SINE B4 -8 284 1 5 1344 366 318 129 0 chr3 99537632 99537865 -60061918 - L1ME1 LINE L1 -7 6172 5910 5 1344 259 172 69 0 chr3 99538133 99538191 -60061592 - L1MEf LINE L1 -3761 2363 2302 5 1344 267 263 59 122 chr3 99538997 99539218 -60060565 - Tigger7 DNA MER2_type -2 2489 2283 6 1344 212 312 0 0 chr3 99539371 99539419 -60060364 + BC1_Mm scRNA scRNA 17 64 -88 6 1344 444 310 58 16 chr3 99539738 99539928 -60059855 - L1MEf LINE L1 -4625 1575 1378 5 1344 2345 187 59 15 chr3 99540613 99541086 -60058697 - RLTR16 LTR ERVK 0 505 12 6 1344 869 163 102 30 chr3 99541094 99541359 -60058424 - MYSERV16_I-int LTR ERVK -2 2324 2041 6 1344 617 229 42 68 chr3 99544161 99544353 -60055430 - B3A SINE B2 -10 188 2 6 1344 500 231 26 108 chr3 99545074 99545268 -60054515 - MER121 Unknown Unknown -113 299 122 6 1344 1752 161 29 113 chr3 99545573 99545654 -60054129 + RMER17C LTR ERVK 6 86 -324 6 1344 477 0 0 0 chr3 99545654 99545707 -60054076 + (TC)n Simple_repeat Simple_repeat 1 53 0 6 1344 1752 161 29 113 chr3 99545707 99545874 -60053909 + RMER17C LTR ERVK 87 233 -177 6 1344 189 0 0 0 chr3 99545874 99545895 -60053888 + (TG)n Simple_repeat Simple_repeat 2 22 0 6 1344 1752 161 29 113 chr3 99545895 99546087 -60053696 + RMER17C LTR ERVK 234 409 -1 6 1344 10589 159 21 46 chr3 99546574 99548687 -60051096 - L1_Mur2 LINE L1 -541 5336 3278 6 1344 6826 85 13 11 chr3 99548665 99548962 -60050821 - L1VL2 LINE L1 -1666 1949 1661 6 1344 450 53 0 0 chr3 99548962 99549019 -60050764 + (TG)n Simple_repeat Simple_repeat 2 58 0 7 1344 6826 108 27 24 chr3 99549019 99550556 -60049227 - L1VL2 LINE L1 -1955 1660 110 6 1344 331 270 178 11 chr3 99550996 99551176 -60048607 - MER2 DNA MER2_type -132 213 4 7 1344 465 19 0 0 chr3 99553200 99553254 -60046529 + (TA)n Simple_repeat Simple_repeat 2 55 0 7 1344 216 97 0 0 chr3 99556287 99556318 -60043465 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 7 1344 584 254 221 20 chr3 99556693 99556987 -60042796 + Tigger13a DNA MER2_type 305 657 -114 7 1344 229 325 66 54 chr3 99557546 99557712 -60042071 - MER53 DNA hAT -9 184 17 7 1344 395 0 93 0 chr3 99557715 99557790 -60041993 + (TTTTG)n Simple_repeat Simple_repeat 3 84 0 7 1344 252 86 0 0 chr3 99558309 99558344 -60041439 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 7 1344 1622 129 44 7 chr3 99558352 99558657 -60041126 - RMER12B LTR ERVK -233 1171 653 7 1344 195 42 0 0 chr3 99558693 99558717 -60041066 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 7 1344 183 300 36 128 chr3 99558908 99559103 -60040680 + L2a LINE L2 3190 3366 -60 8 1344 543 66 0 0 chr3 99559127 99559203 -60040580 + (TG)n Simple_repeat Simple_repeat 2 77 0 8 1344 404 367 120 25 chr3 99560733 99561057 -60038726 + MLT1I LTR MaLR 57 411 0 8 1344 264 309 0 0 chr3 99561147 99561215 -60038568 + ID4_ SINE ID 5 72 -11 8 1344 369 43 0 0 chr3 99561237 99561284 -60038499 + (GGA)n Simple_repeat Simple_repeat 1 47 0 8 1344 715 47 28 0 chr3 99561476 99561582 -60038201 - L1_Mus3 LINE L1 -90 6548 6440 8 1344 1773 83 0 0 chr3 99561580 99561822 -60037961 + L1_Mus3 LINE L1 6129 6370 -268 8 1344 305 286 9 18 chr3 99561935 99562049 -60037734 + L1MB8 LINE L1 4844 4956 -1190 8 1344 377 257 179 7 chr3 99562072 99562217 -60037566 + L1MB8 LINE L1 5031 5200 -946 8 1344 874 84 11 0 chr3 99562219 99562343 -60037440 + B1_Mus1 SINE Alu 25 148 0 8 1344 530 309 121 14 chr3 99562699 99563188 -60036595 + L1MB8 LINE L1 5583 6123 -55 8 1344 778 38 9 9 chr3 99564251 99564358 -60035425 + (TC)n Simple_repeat Simple_repeat 1 107 0 8 1344 361 318 34 19 chr3 99565463 99565668 -60034115 + L1MEb LINE L1 6 213 -5857 8 1344 507 123 0 0 chr3 99566156 99566237 -60033546 + (CA)n Simple_repeat Simple_repeat 1 81 0 9 1344 304 265 153 7 chr3 99566342 99566479 -60033304 - L1_Rod LINE L1 -1 5846 5690 9 1344 2234 157 13 51 chr3 99566770 99567160 -60032623 - ORR1C1 LTR MaLR 0 378 4 9 1344 21 36 0 0 chr3 99567462 99567490 -60032293 + AT_rich Low_complexity Low_complexity 1 28 0 9 1344 421 330 81 37 chr3 99567542 99567838 -60031945 - L1M5 LINE L1 -2873 3273 2965 9 1344 292 281 49 0 chr3 99568977 99569059 -60030724 - PB1 SINE Alu -21 106 21 9 1344 583 176 74 16 chr3 99569496 99569617 -60030166 + B1_Mur3 SINE Alu 1 128 -21 9 1344 24 0 0 0 chr3 99571013 99571037 -60028746 + AT_rich Low_complexity Low_complexity 1 24 0 9 1344 682 242 80 9 chr3 99571159 99571384 -60028399 - L1_Rod LINE L1 -1824 4023 3783 9 1344 6523 139 11 0 chr3 99571389 99572442 -60027341 - Lx4A LINE L1 -380 6678 5614 9 1344 1268 107 11 5 chr3 99572480 99572668 -60027115 - B2_Mm2 SINE B2 -3 192 4 1 1344 9010 63 35 4 chr3 99572820 99574752 -60025031 - L1Md_F2 LINE L1 -3 6579 4610 1 1344 236 266 165 0 chr3 99574932 99575041 -60024742 + L1M5 LINE L1 5345 5471 -693 1 1344 527 371 55 4 chr3 99575380 99575618 -60024165 - MLT1A0 LTR MaLR -11 354 105 1 1344 22 0 0 0 chr3 99575978 99576000 -60023783 + AT_rich Low_complexity Low_complexity 1 22 0 1 1344 212 324 26 66 chr3 99576799 99576875 -60022908 + ID_B1 SINE B4 21 93 -131 1 1344 261 275 14 0 chr3 99576816 99576885 -60022898 + BC1_Mm scRNA scRNA 32 101 -51 1 1344 459 148 0 0 chr3 99576914 99577002 -60022781 + (TG)n Simple_repeat Simple_repeat 1 88 0 1 1344 735 250 18 18 chr3 99577002 99577165 -60022618 - RSINE1 SINE B4 0 165 3 1 1344 262 315 89 32 chr3 99579575 99579765 -60020018 - LTR81A LTR ERV1? -1099 251 51 1 1344 350 326 134 59 chr3 99579949 99580203 -60019580 + LTR33 LTR ERVL 240 512 -3 1 1344 271 276 0 0 chr3 99581442 99581500 -60018283 - ID4 SINE ID -25 58 1 1 1344 396 138 0 0 chr3 99581997 99582062 -60017721 + (CA)n Simple_repeat Simple_repeat 2 66 0 1 1344 254 195 56 24 chr3 99582322 99582448 -60017335 + GA-rich Low_complexity Low_complexity 2 131 0 1 1344 1450 289 74 25 chr3 99583745 99584384 -60015399 - Lx8 LINE L1 -1 7472 6803 1 1344 293 268 174 0 chr3 99584386 99584576 -60015207 + L1_Mur3 LINE L1 2355 2577 -3303 1 1344 4241 133 50 77 chr3 99584584 99585341 -60014442 - RMER19A LTR ERVK 0 737 1 1 1344 985 76 23 6 chr3 99585638 99585809 -60013974 + (TC)n Simple_repeat Simple_repeat 1 174 0 1 1344 366 23 0 0 chr3 99585809 99585851 -60013932 + (CA)n Simple_repeat Simple_repeat 1 43 0 1 1344 517 286 181 40 chr3 99586564 99586812 -60012971 + B4 SINE B4 10 292 0 1 1344 194 370 74 0 chr3 99587102 99587183 -60012600 + L2c LINE L2 3123 3209 -178 1 1344 191 146 24 0 chr3 99587386 99587427 -60012356 + (CATATA)n Simple_repeat Simple_repeat 5 46 0 1 1344 2146 73 0 3 chr3 99587979 99588281 -60011502 + L1_Mm LINE L1 5010 5310 -573 1 1344 1965 138 35 6 chr3 99588281 99588623 -60011160 + RLTR28 LTR ERVL 173 524 0 1 1344 663 13 0 0 chr3 99589206 99589282 -60010501 + (GAAA)n Simple_repeat Simple_repeat 1 76 0 1 1344 749 264 30 49 chr3 99590243 99590506 -60009277 - AmnSINE1 SINE SINE -80 495 238 1 1344 195 129 0 0 chr3 99590928 99590959 -60008824 + (TCC)n Simple_repeat Simple_repeat 3 33 0 1 1344 386 338 58 7 chr3 99591134 99591289 -60008494 + MLT2D LTR ERVL 379 541 -19 1 1344 516 162 27 13 chr3 99591291 99591441 -60008342 + CT-rich Low_complexity Low_complexity 1 152 0 1 1344 375 311 165 33 chr3 99591975 99592370 -60007413 - L2 LINE L2 -647 2772 2326 1 1344 760 282 86 26 chr3 99595915 99596184 -60003599 - B4A SINE B4 -7 285 1 1 1344 25 0 0 0 chr3 99596195 99596220 -60003563 + AT_rich Low_complexity Low_complexity 1 25 0 1 1344 365 336 39 141 chr3 99596861 99597241 -60002542 + ORR1E LTR MaLR 1 341 -33 1 1344 310 343 66 38 chr3 99599691 99599903 -59999880 + L1MC LINE L1 5335 5552 -2330 1 1344 297 309 117 0 chr3 99600680 99600842 -59998941 - MIR SINE MIR -1 261 81 1 1344 723 262 98 0 chr3 99600891 99601074 -59998709 + B3 SINE B2 4 204 -12 1 1344 21 0 0 0 chr3 99601093 99601114 -59998669 + AT_rich Low_complexity Low_complexity 1 21 0 1 1344 625 286 29 24 chr3 99601114 99601322 -59998461 - ID_B1 SINE B4 -15 209 1 1 1344 426 119 0 0 chr3 99602723 99602807 -59996976 + (TC)n Simple_repeat Simple_repeat 1 84 0 1 1344 378 0 0 0 chr3 99602807 99602849 -59996934 + (TG)n Simple_repeat Simple_repeat 1 42 0 1 1344 589 300 66 13 chr3 99602854 99603006 -59996777 - B3A SINE B2 -38 160 1 1 1344 183 303 66 0 chr3 99603102 99603178 -59996605 - MIR SINE MIR -132 130 50 1 1344 26 0 0 0 chr3 99604483 99604509 -59995274 + AT_rich Low_complexity Low_complexity 1 26 0 1 1344 702 276 108 6 chr3 99605295 99605655 -59994128 + L1M2 LINE L1 2118 2514 -3629 1 1344 222 263 70 0 chr3 99605659 99605716 -59994067 + B1F2 SINE Alu 32 92 -57 1 1344 1197 276 54 15 chr3 99605747 99605821 -59993962 + L1M2 LINE L1 2509 2584 -3559 1 1344 1954 146 163 30 chr3 99605821 99606286 -59993497 - RLTR11A2 LTR ERVK 0 527 1 1 1344 1197 276 54 15 chr3 99606286 99606744 -59993039 + L1M2 LINE L1 2585 3062 -3081 1 1344 477 281 62 0 chr3 99606750 99606878 -59992905 - ID_B1 SINE B4 -8 216 81 1 1344 363 274 120 34 chr3 99606883 99607291 -59992492 + L1M2 LINE L1 3071 3513 -2630 1 1344 240 318 47 0 chr3 99607310 99607395 -59992388 + RMER15 LTR ERVL 486 574 -1 1 1344 673 276 71 21 chr3 99607398 99607735 -59992048 - L1M2 LINE L1 -2173 3970 3617 1 1344 980 193 36 27 chr3 99607800 99608024 -59991759 - RMER15 LTR ERVL -328 247 22 1 1344 681 296 152 14 chr3 99608202 99608617 -59991166 + L1M2 LINE L1 4037 4508 -1635 1 1344 513 312 58 6 chr3 99608623 99608797 -59990986 + B3 SINE B2 4 186 -30 1 1344 24 0 0 0 chr3 99608802 99608826 -59990957 + AT_rich Low_complexity Low_complexity 1 24 0 1 1344 417 39 0 0 chr3 99608830 99608881 -59990902 + (GGAA)n Simple_repeat Simple_repeat 2 52 0 1 1344 325 256 25 13 chr3 99608882 99608961 -59990822 + polypurine Low_complexity Low_complexity 4 83 0 1 1344 912 131 11 22 chr3 99608961 99609141 -59990642 + GA-rich Low_complexity Low_complexity 3 180 0 1 1344 195 42 0 0 chr3 99609146 99609170 -59990613 + (GGGA)n Simple_repeat Simple_repeat 3 26 0 1 1344 344 306 33 55 chr3 99609651 99609924 -59989859 + L1ME3A LINE L1 5895 6161 -12 1 1344 477 299 16 24 chr3 99610022 99610170 -59989613 + ID_B1 SINE B4 2 138 -154 1 1344 235 162 40 0 chr3 99610394 99610468 -59989315 + (CAGA)n Simple_repeat Simple_repeat 2 78 0 1 1344 894 238 34 30 chr3 99611268 99611536 -59988247 + MER121 Unknown Unknown 12 280 -132 1 1344 256 204 142 100 chr3 99612006 99612126 -59987657 + L1MC4 LINE L1 7445 7569 -473 1 1344 323 250 30 46 chr3 99614147 99614266 -59985517 + MIRb SINE MIR 49 168 -108 1 1344 233 209 0 0 chr3 99614451 99614494 -59985289 + A-rich Low_complexity Low_complexity 1 43 0 1 1345 248 311 30 8 chr3 99616362 99616495 -59983288 + ID_B1 SINE B4 89 224 0 1 1345 285 29 0 0 chr3 99616502 99616536 -59983247 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 1 1345 46 33 0 0 chr3 99616589 99616649 -59983134 + AT_rich Low_complexity Low_complexity 1 60 0 1 1345 659 57 84 9 chr3 99616686 99616793 -59982990 - L1Md_F3 LINE L1 -6 6578 6464 1 1345 22 35 0 0 chr3 99618655 99618684 -59981099 + AT_rich Low_complexity Low_complexity 1 29 0 1 1345 248 314 119 0 chr3 99619686 99619804 -59979979 - MIR SINE MIR -123 139 8 1 1345 339 25 0 0 chr3 99620486 99620526 -59979257 + (CA)n Simple_repeat Simple_repeat 2 41 0 1 1345 836 257 19 10 chr3 99627991 99628199 -59971584 - B3 SINE B2 -5 211 2 1 1345 294 29 0 0 chr3 99628596 99628631 -59971152 + (TG)n Simple_repeat Simple_repeat 2 36 0 1 1345 561 306 21 0 chr3 99629001 99629145 -59970638 + B3A SINE B2 14 160 -38 1 1345 504 0 0 0 chr3 99629146 99629202 -59970581 + (CA)n Simple_repeat Simple_repeat 1 56 0 1 1345 610 321 11 5 chr3 99629235 99629420 -59970363 + Lx8 LINE L1 7121 7306 -167 1 1345 367 214 79 0 chr3 99630337 99630426 -59969357 - MTD LTR MaLR -60 359 264 1 1345 1211 226 85 21 chr3 99630415 99630745 -59969038 - MTD LTR MaLR -59 360 10 1 1345 260 283 170 0 chr3 99631361 99631467 -59968316 + RSINE1 SINE B4 8 131 -34 1 1345 231 36 0 0 chr3 99631477 99631505 -59968278 + (CAAA)n Simple_repeat Simple_repeat 3 30 0 1 1345 732 310 55 112 chr3 99632406 99632845 -59966938 - MLT2B1 LTR ERVL 0 414 1 1 1345 1594 236 88 69 chr3 99633429 99633952 -59965831 - RMER15 LTR ERVL -14 561 29 1 1345 564 257 122 50 chr3 99634023 99634244 -59965539 + MLT1D LTR MaLR 269 505 0 1 1345 299 296 159 25 chr3 99635005 99635168 -59964615 + L1MEc LINE L1 215 399 -6001 1 1345 442 272 43 31 chr3 99635341 99635504 -59964279 + L1MEc LINE L1 690 854 -5546 1 1345 3292 63 5 2 chr3 99635871 99636297 -59963486 - L1_Mus3 LINE L1 -1 6637 6211 1 1345 674 273 0 52 chr3 99636338 99636512 -59963271 - RSINE1 SINE B4 0 165 1 1 1345 2652 142 4 30 chr3 99636735 99637198 -59962585 + RLTR11B LTR ERVK 1 451 -2 1 1345 255 290 91 77 chr3 99637821 99638030 -59961753 - L3 LINE CR1 -2238 2251 2040 1 1345 191 203 0 17 chr3 99638303 99638363 -59961420 + T-rich Low_complexity Low_complexity 1 59 0 1 1345 182 300 17 68 chr3 99639311 99639429 -59960354 - MIRb SINE MIR -38 230 119 1 1345 1196 142 47 5 chr3 99639748 99639960 -59959823 + URR1B DNA MER1_type 5 225 0 1 1345 37 62 0 0 chr3 99640216 99640281 -59959502 + AT_rich Low_complexity Low_complexity 1 65 0 1 1345 624 283 13 8 chr3 99640755 99640966 -59958817 + B3A SINE B2 2 216 0 1 1345 580 305 98 3 chr3 99641040 99641336 -59958447 - BLACKJACK DNA AcHobo -1980 964 641 1 1345 253 349 87 52 chr3 99641632 99641739 -59958044 - BLACKJACK DNA AcHobo -2607 337 225 1 1345 910 300 58 29 chr3 99641739 99642086 -59957697 + ORR1E LTR MaLR 1 357 -2 1 1345 253 349 87 52 chr3 99642086 99642208 -59957575 - BLACKJACK DNA AcHobo -2720 224 100 1 1345 783 50 0 0 chr3 99643477 99643577 -59956206 + (GGAA)n Simple_repeat Simple_repeat 3 102 0 1 1345 486 0 0 0 chr3 99643579 99643633 -59956150 + (GA)n Simple_repeat Simple_repeat 1 54 0 1 1345 544 332 99 12 chr3 99645103 99645435 -59954348 - MLT1A0 LTR MaLR 0 365 5 1 1345 333 0 0 0 chr3 99645896 99645933 -59953850 + (TC)n Simple_repeat Simple_repeat 1 37 0 1 1345 261 0 0 0 chr3 99645933 99645961 -59953822 + (CA)n Simple_repeat Simple_repeat 1 29 0 1 1345 896 288 68 4 chr3 99645995 99646260 -59953523 + Tigger7 DNA MER2_type 12 293 -2198 1 1345 420 20 0 0 chr3 99647670 99647719 -59952064 + (CA)n Simple_repeat Simple_repeat 1 49 0 2 1345 597 64 0 0 chr3 99649036 99649114 -59950669 + (GA)n Simple_repeat Simple_repeat 2 79 0 2 1345 920 165 6 6 chr3 99649135 99649300 -59950483 - URR1B DNA MER1_type -58 167 3 2 1345 2544 166 75 18 chr3 99649405 99649451 -59950332 - RLTR20A LTR ERVK 0 541 488 2 1345 414 0 0 0 chr3 99649451 99649497 -59950286 + (CA)n Simple_repeat Simple_repeat 1 46 0 2 1345 2544 166 75 18 chr3 99649497 99649531 -59950252 - RLTR20A LTR ERVK -54 487 441 2 1345 309 26 0 0 chr3 99649531 99649569 -59950214 + (CA)n Simple_repeat Simple_repeat 2 39 0 2 1345 2544 166 75 18 chr3 99649569 99649819 -59949964 - RLTR20A LTR ERVK -101 440 196 2 1345 384 22 0 0 chr3 99649819 99649864 -59949919 + (TC)n Simple_repeat Simple_repeat 2 46 0 2 1345 2544 166 75 18 chr3 99649864 99650039 -59949744 - RLTR20A LTR ERVK -346 195 6 2 1345 402 171 14 0 chr3 99650037 99650107 -59949676 - URR1B DNA MER1_type -154 71 1 2 1345 333 314 39 47 chr3 99650389 99650516 -59949267 - B1F SINE Alu -23 126 1 2 1345 678 270 79 40 chr3 99651117 99651395 -59948388 + B4A SINE B4 3 291 -1 2 1345 28 0 0 0 chr3 99651581 99651609 -59948174 + AT_rich Low_complexity Low_complexity 1 28 0 2 1345 268 255 26 34 chr3 99651700 99651811 -59947972 - B1F2 SINE Alu -7 110 2 2 1345 405 0 0 0 chr3 99652006 99652051 -59947732 + (TG)n Simple_repeat Simple_repeat 2 46 0 2 1345 4411 76 2 21 chr3 99652269 99652873 -59946910 + L1Md_F2 LINE L1 5991 6582 0 2 1345 4411 76 2 21 chr3 99652873 99652898 -59946885 + L1Md_F2 LINE L1 6561 6582 0 2 1345 321 285 96 20 chr3 99653503 99653700 -59946083 - MIRb SINE MIR -23 245 34 2 1345 259 248 19 28 chr3 99655877 99655896 -59943887 + (TA)n Simple_repeat Simple_repeat 1 19 0 2 1345 525 32 0 0 chr3 99655896 99655959 -59943824 + (TG)n Simple_repeat Simple_repeat 2 64 0 2 1345 259 248 19 28 chr3 99655959 99656047 -59943736 + (TA)n Simple_repeat Simple_repeat 2 88 0 2 1345 950 258 58 4 chr3 99657412 99657669 -59942114 + ORR1D2 LTR MaLR 21 291 -79 2 1345 342 256 26 0 chr3 99657731 99657809 -59941974 + RSINE1 SINE B4 44 123 -42 2 1345 405 0 0 0 chr3 99657842 99657887 -59941896 + (TC)n Simple_repeat Simple_repeat 1 45 0 2 1345 324 0 0 0 chr3 99657887 99657922 -59941861 + (CA)n Simple_repeat Simple_repeat 1 36 0 2 1345 181 360 33 11 chr3 99658843 99658933 -59940850 + L2a LINE L2 3333 3424 -2 2 1345 342 0 0 0 chr3 99660947 99660985 -59938798 + (TG)n Simple_repeat Simple_repeat 1 38 0 2 1345 183 184 0 0 chr3 99661063 99661101 -59938682 + (TA)n Simple_repeat Simple_repeat 2 39 0 2 1345 880 294 43 32 chr3 99662108 99662389 -59937394 + B4A SINE B4 1 284 -8 2 1345 373 288 42 0 chr3 99663003 99663121 -59936662 - B3A SINE B2 -28 170 48 2 1345 8141 16 0 0 chr3 99663139 99664064 -59935719 - L1Md_A LINE L1 -1095 4788 3864 2 1345 7268 18 0 0 chr3 99664059 99664877 -59934906 + L1Md_A LINE L1 4769 5586 -297 2 1345 8540 31 4 1 chr3 99664877 99665870 -59933913 + L1Md_A LINE L1 5587 6582 0 2 1345 4364 154 51 55 chr3 99666295 99666644 -59933139 + RMER13B LTR ERVK 34 388 -520 2 1345 1189 41 7 0 chr3 99666644 99666790 -59932993 + B1_Mus1 SINE Alu 1 147 -1 2 1345 4364 154 51 55 chr3 99666790 99667318 -59932465 + RMER13B LTR ERVK 389 908 0 2 1345 566 293 79 5 chr3 99667413 99667629 -59932154 - MLT1B LTR MaLR -158 232 1 2 1345 231 328 71 8 chr3 99667823 99667949 -59931834 - L2 LINE L2 -1975 1444 1311 2 1345 285 29 0 0 chr3 99668027 99668061 -59931722 + (CA)n Simple_repeat Simple_repeat 1 34 0 2 1345 231 36 0 0 chr3 99668061 99668088 -59931695 + (GA)n Simple_repeat Simple_repeat 2 29 0 2 1345 356 0 23 0 chr3 99669743 99669787 -59929996 + (TG)n Simple_repeat Simple_repeat 1 45 0 2 1345 1155 69 0 0 chr3 99670244 99670388 -59929395 + B1_Mus2 SINE Alu 2 145 -2 2 1345 231 114 0 0 chr3 99670389 99670424 -59929359 + (TAA)n Simple_repeat Simple_repeat 2 36 0 2 1345 925 229 4 106 chr3 99671232 99671451 -59928332 + MTE2a LTR MaLR 15 218 -161 2 1345 664 308 24 0 chr3 99671451 99671662 -59928121 - B3 SINE B2 0 216 1 2 1345 925 229 4 106 chr3 99671662 99671716 -59928067 + MTE2a LTR MaLR 219 260 -119 2 1345 25 31 0 0 chr3 99675059 99675091 -59924692 + AT_rich Low_complexity Low_complexity 1 32 0 2 1345 837 298 47 4 chr3 99675167 99675423 -59924360 + B4 SINE B4 26 292 0 2 1345 225 94 0 0 chr3 99675907 99675939 -59923844 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 2 1345 423 0 0 0 chr3 99677357 99677404 -59922379 + (TA)n Simple_repeat Simple_repeat 1 47 0 2 1345 259 355 75 0 chr3 99677760 99677867 -59921916 - MIR SINE MIR -103 159 45 2 1345 703 202 19 12 chr3 99680215 99680375 -59919408 - Lx6 LINE L1 -5 7455 7295 2 1345 237 253 0 62 chr3 99680738 99680818 -59918965 - MLT1A1 LTR MaLR -12 396 322 2 1345 288 137 0 0 chr3 99680915 99680966 -59918817 + (GA)n Simple_repeat Simple_repeat 2 52 0 2 1345 273 256 25 15 chr3 99681341 99681466 -59918317 + L1_Mur1 LINE L1 2418 2537 -3349 2 1345 3380 57 2 7 chr3 99681500 99681928 -59917855 + L1_Mus1 LINE L1 6141 6566 -1 2 1345 501 17 0 0 chr3 99684019 99684077 -59915706 + (TAGA)n Simple_repeat Simple_repeat 1 58 0 2 1345 811 263 81 86 chr3 99684394 99684805 -59914978 + MTE2a LTR MaLR 6 405 -14 2 1345 235 325 42 65 chr3 99684998 99685166 -59914617 - MLT1J1 LTR MaLR -263 181 18 2 1345 653 286 14 19 chr3 99685218 99685425 -59914358 + B3 SINE B2 4 209 -7 2 1345 222 196 54 11 chr3 99686099 99686192 -59913591 + (TATAA)n Simple_repeat Simple_repeat 4 100 0 2 1345 348 43 0 0 chr3 99686841 99686887 -59912896 - L1_Mm LINE L1 -1068 4815 4770 2 1345 696 47 0 12 chr3 99686878 99686964 -59912819 + L1Md_F2 LINE L1 5502 5586 -297 2 1345 8020 50 1 22 chr3 99686964 99687979 -59911804 + L1Md_F2 LINE L1 5587 6580 -2 2 1345 765 288 25 46 chr3 99688196 99688433 -59911350 + B4 SINE B4 2 233 -59 2 1345 333 175 0 16 chr3 99688517 99688581 -59911202 + B3 SINE B2 12 74 -142 2 1345 859 131 28 0 chr3 99688749 99688894 -59910889 + URR1A DNA MER1_type 78 226 0 2 1345 517 262 123 28 chr3 99690120 99690371 -59909412 - MTD LTR MaLR -144 275 1 2 1345 1020 217 29 5 chr3 99690404 99690612 -59909171 + B3 SINE B2 2 214 -2 2 1345 977 211 5 5 chr3 99690810 99691001 -59908782 + B3 SINE B2 1 191 -25 2 1345 23 0 0 0 chr3 99691535 99691558 -59908225 + AT_rich Low_complexity Low_complexity 1 23 0 2 1345 26 0 0 0 chr3 99691915 99691941 -59907842 + AT_rich Low_complexity Low_complexity 1 26 0 2 1345 189 211 0 0 chr3 99692778 99692830 -59906953 + (TTAA)n Simple_repeat Simple_repeat 3 54 0 2 1345 495 0 0 0 chr3 99693089 99693144 -59906639 + (CAGAGA)n Simple_repeat Simple_repeat 6 60 0 2 1345 1083 317 86 36 chr3 99693406 99693985 -59905798 + Tigger7 DNA MER2_type 7 614 -1877 2 1345 432 298 74 6 chr3 99694491 99694653 -59905130 - L1MB3 LINE L1 -195 5988 5816 2 1345 3010 105 12 0 chr3 99694668 99695077 -59904706 + L1VL4 LINE L1 230 643 -5659 2 1345 887 40 73 0 chr3 99695077 99695201 -59904582 - RLTR10D LTR ERVK 0 359 227 2 1345 958 61 0 0 chr3 99695189 99695321 -59904462 + B1_Mm SINE Alu 16 147 0 2 1345 387 0 0 0 chr3 99695321 99695364 -59904419 + (A)n Simple_repeat Simple_repeat 1 43 0 2 1345 1505 72 72 0 chr3 99695393 99695614 -59904169 - RLTR10D LTR ERVK -122 237 1 2 1345 2699 184 30 24 chr3 99695614 99696244 -59903539 - IAP-d-int LTR ERVK 0 6542 5645 2 1345 29776 177 6 19 chr3 99696287 99701412 -59898371 - IAP-d-int LTR ERVK -358 6184 1125 2 1345 843 211 0 12 chr3 99701398 99701571 -59898212 - IAP-d-int LTR ERVK -6072 470 300 2 1345 16941 77 4 2 chr3 99701571 99703814 -59895969 + L1Md_F2 LINE L1 3344 5589 -294 2 1345 7591 70 7 7 chr3 99703815 99704807 -59894976 + L1Md_F2 LINE L1 5591 6582 0 2 1345 550 56 0 0 chr3 99704813 99704885 -59894898 + MusHAL1 LINE L1 490 561 -2793 2 1345 281 245 89 69 chr3 99704888 99704989 -59894794 - L1MB3 LINE L1 -399 5784 5682 2 1345 1045 87 22 28 chr3 99704989 99705167 -59894616 + Lx LINE L1 6478 6654 0 2 1345 203 164 0 35 chr3 99705254 99705311 -59894472 + T-rich Low_complexity Low_complexity 4 58 0 2 1345 330 246 32 198 chr3 99705317 99705608 -59894175 - L1MB3 LINE L1 -610 5574 5309 2 1345 38902 28 0 0 chr3 99705583 99711962 -59887821 - L1Md_T LINE L1 0 6585 109 2 1345 285 314 40 19 chr3 99712360 99712550 -59887233 - L1M3f LINE L1 -4127 1201 1063 2 1345 27 29 0 0 chr3 99714166 99714200 -59885583 + AT_rich Low_complexity Low_complexity 1 34 0 2 1345 708 270 20 8 chr3 99715719 99715931 -59883852 - B3A SINE B2 -1 215 1 2 1345 254 310 11 0 chr3 99716409 99716496 -59883287 + B1F1 SINE Alu 49 136 -13 2 1345 1296 274 4 0 chr3 99716509 99716786 -59882997 + B4A SINE B4 14 291 -1 2 1345 232 299 13 25 chr3 99716793 99716872 -59882911 + (CA)n Simple_repeat Simple_repeat 1 78 0 2 1345 402 74 0 0 chr3 99717129 99717183 -59882600 + (A)n Simple_repeat Simple_repeat 1 54 0 2 1345 423 0 0 0 chr3 99719929 99719976 -59879807 + (TG)n Simple_repeat Simple_repeat 1 47 0 2 1345 24 67 0 0 chr3 99720123 99720168 -59879615 + AT_rich Low_complexity Low_complexity 1 45 0 2 1345 394 184 30 42 chr3 99720222 99720387 -59879396 + (TA)n Simple_repeat Simple_repeat 2 164 0 2 1345 352 140 47 100 chr3 99720335 99720525 -59879258 + (CATAT)n Simple_repeat Simple_repeat 1 180 0 2 1345 992 255 12 12 chr3 99721173 99721443 -59878340 - L1MA4 LINE L1 -233 5938 5669 2 1345 1241 286 58 17 chr3 99721441 99721960 -59877823 - L1MA4 LINE L1 -1217 4926 4387 2 1345 180 0 0 0 chr3 99722102 99722122 -59877661 + (TTTTTG)n Simple_repeat Simple_repeat 2 21 0 2 1345 1692 166 50 18 chr3 99722616 99722959 -59876824 - MTC LTR MaLR 0 421 68 2 1345 552 68 0 0 chr3 99722959 99723032 -59876751 + (TTCC)n Simple_repeat Simple_repeat 3 75 0 2 1345 4192 66 6 0 chr3 99723034 99723563 -59876220 - L1_Mus3 LINE L1 -1 6637 6106 2 1345 4075 74 3 0 chr3 99723563 99724305 -59875478 + L1_Mus3 LINE L1 5320 6063 -575 2 1345 386 185 12 0 chr3 99724305 99724386 -59875397 - MTC LTR MaLR -339 82 1 2 1345 2459 171 248 25 chr3 99724567 99725296 -59874487 + L1_Mur2 LINE L1 4563 5503 -621 2 1345 2508 207 103 21 chr3 99725291 99725775 -59874008 + Lx5 LINE L1 6388 6923 -127 2 1345 2144 140 9 0 chr3 99725775 99726097 -59873686 - ORR1A3 LTR MaLR 0 326 2 2 1345 2508 207 103 21 chr3 99726097 99726225 -59873558 + Lx5 LINE L1 6924 7050 0 2 1345 794 271 48 105 chr3 99726451 99726851 -59872932 + MTE2a LTR MaLR 1 377 -2 2 1345 439 317 215 29 chr3 99727364 99727610 -59872173 + B4 SINE B4 1 292 0 2 1345 418 152 11 11 chr3 99727617 99727710 -59872073 + (CA)n Simple_repeat Simple_repeat 2 94 0 2 1345 744 152 0 0 chr3 99727770 99727935 -59871848 + CT-rich Low_complexity Low_complexity 2 166 0 2 1345 366 23 0 0 chr3 99727935 99727978 -59871805 + (CA)n Simple_repeat Simple_repeat 1 43 0 3 1345 254 362 32 13 chr3 99728811 99728965 -59870818 - L1M5 LINE L1 -479 5683 5527 3 1345 467 305 62 0 chr3 99729021 99729149 -59870634 - RSINE1 SINE B4 -28 137 2 3 1345 543 220 142 6 chr3 99729849 99730032 -59869751 - CR1_Mam LINE CR1 -771 1433 1226 3 1345 1072 257 48 42 chr3 99730256 99730609 -59869174 - MTEa LTR MaLR -7 372 18 3 1345 322 362 58 17 chr3 99731464 99731638 -59868145 + MER5A DNA MER1_type 2 182 -7 3 1345 677 326 96 35 chr3 99732222 99732619 -59867164 + Lx8 LINE L1 6888 7308 -165 3 1345 261 57 0 0 chr3 99733185 99733220 -59866563 + (TGAA)n Simple_repeat Simple_repeat 1 35 0 3 1345 201 333 0 15 chr3 99733290 99733357 -59866426 - MIRc SINE MIR -191 77 12 3 1345 183 72 0 67 chr3 99735513 99735558 -59864225 + (CAAAA)n Simple_repeat Simple_repeat 2 43 0 3 1345 234 116 0 0 chr3 99736924 99736967 -59862816 + (CAGA)n Simple_repeat Simple_repeat 2 44 0 3 1345 345 24 0 0 chr3 99739669 99739711 -59860072 + (A)n Simple_repeat Simple_repeat 1 42 0 3 1345 360 0 0 0 chr3 99741864 99741904 -59857879 + (CAA)n Simple_repeat Simple_repeat 3 42 0 3 1345 1384 119 4 88 chr3 99741991 99742231 -59857552 - URR1B DNA MER1_type -1 224 5 3 1345 196 333 11 11 chr3 99742234 99742322 -59857461 - MIR3 SINE MIR -24 184 97 3 1346 738 247 48 0 chr3 99747029 99747190 -59852593 + B3 SINE B2 2 163 -53 3 1346 279 0 0 0 chr3 99747190 99747221 -59852562 + (TG)n Simple_repeat Simple_repeat 1 31 0 3 1346 738 247 48 0 chr3 99747221 99747245 -59852538 + B3 SINE B2 164 194 -22 3 1346 218 176 0 19 chr3 99747247 99747299 -59852484 + GA-rich Low_complexity Low_complexity 4 54 0 3 1346 344 136 4 27 chr3 99747716 99747805 -59851978 - L1_Mus3 LINE L1 0 6638 6567 3 1346 829 199 7 7 chr3 99748165 99748312 -59851471 - B1_Mus2 SINE Alu 0 147 1 3 1346 378 296 71 27 chr3 99748443 99748598 -59851185 + B3A SINE B2 6 167 -31 3 1346 411 73 0 0 chr3 99748598 99748653 -59851130 + (CA)n Simple_repeat Simple_repeat 2 56 0 3 1346 378 296 71 27 chr3 99748653 99748681 -59851102 + B3A SINE B2 168 197 -1 3 1346 1920 229 35 159 chr3 99750378 99751070 -59848713 - RMER19C LTR ERVK -5 606 1 3 1346 234 0 0 0 chr3 99751456 99751482 -59848301 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 3 1346 838 294 54 25 chr3 99752147 99752423 -59847360 + B4A SINE B4 5 288 -4 3 1346 187 253 31 52 chr3 99752731 99752827 -59846956 - L2a LINE L2 -67 3359 3266 3 1346 610 288 7 7 chr3 99753643 99753790 -59845993 - RSINE1 SINE B4 -16 149 3 3 1346 1074 199 45 0 chr3 99755214 99755415 -59844368 + B3 SINE B2 1 210 -6 3 1346 3138 84 52 25 chr3 99755426 99756024 -59843759 - Lx3A LINE L1 -878 6103 5454 3 1346 21 36 0 0 chr3 99756104 99756132 -59843651 + AT_rich Low_complexity Low_complexity 1 28 0 3 1346 2505 56 49 17 chr3 99756189 99756533 -59843250 - Lx3_Mus LINE L1 -605 6404 6050 3 1346 4710 72 14 23 chr3 99756533 99757174 -59842609 + Lx3_Mus LINE L1 6367 7001 -8 3 1346 29 47 0 0 chr3 99757174 99757217 -59842566 + AT_rich Low_complexity Low_complexity 1 43 0 3 1346 405 0 0 0 chr3 99757903 99757948 -59841835 + (CA)n Simple_repeat Simple_repeat 1 45 0 3 1346 993 206 53 14 chr3 99758552 99758759 -59841024 + B3 SINE B2 2 216 0 3 1346 201 74 0 0 chr3 99759275 99759302 -59840481 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 3 1346 660 208 67 0 chr3 99759309 99759429 -59840354 - B1_Mur2 SINE Alu -17 132 5 3 1346 273 79 95 0 chr3 99760008 99760071 -59839712 + (CAGAGA)n Simple_repeat Simple_repeat 4 72 0 3 1346 23 78 0 0 chr3 99760882 99760933 -59838850 + AT_rich Low_complexity Low_complexity 1 51 0 3 1346 289 297 144 11 chr3 99761182 99761369 -59838414 - L1M5 LINE L1 -456 5668 5457 3 1346 757 239 28 51 chr3 99762725 99762762 -59837021 + B3 SINE B2 6 38 -178 3 1346 1285 231 167 0 chr3 99762762 99763121 -59836662 + MTD LTR MaLR 1 419 0 3 1346 757 239 28 51 chr3 99763121 99763299 -59836484 + B3 SINE B2 39 216 0 3 1346 21 0 0 0 chr3 99763301 99763322 -59836461 + AT_rich Low_complexity Low_complexity 1 21 0 3 1346 423 0 0 0 chr3 99764459 99764506 -59835277 + (CA)n Simple_repeat Simple_repeat 2 48 0 3 1346 272 183 77 90 chr3 99764794 99764872 -59834911 + MER20 DNA MER1_type 7 83 -136 3 1346 432 55 0 0 chr3 99764982 99765037 -59834746 + (TTTC)n Simple_repeat Simple_repeat 2 56 0 3 1346 201 282 0 0 chr3 99765040 99765079 -59834704 - MIRc SINE MIR -141 127 89 3 1346 236 200 50 0 chr3 99765918 99765978 -59833805 + MamGypLTR1c LTR Gypsy 114 176 -627 3 1346 236 306 0 0 chr3 99766556 99766618 -59833165 + (TA)n Simple_repeat Simple_repeat 1 62 0 3 1346 464 116 0 11 chr3 99767293 99767380 -59832403 + (TCCA)n Simple_repeat Simple_repeat 1 86 0 3 1346 291 203 0 0 chr3 99769592 99769666 -59830117 + (CA)n Simple_repeat Simple_repeat 1 74 0 3 1346 386 135 40 0 chr3 99772035 99772109 -59827674 + (ATGGTG)n Simple_repeat Simple_repeat 4 80 0 3 1346 734 224 58 23 chr3 99776232 99776406 -59823377 - B3A SINE B2 -18 180 1 3 1346 1507 147 0 0 chr3 99776434 99776659 -59823124 + URR1B DNA MER1_type 1 225 0 3 1346 22 56 0 0 chr3 99776889 99776925 -59822858 + AT_rich Low_complexity Low_complexity 1 36 0 3 1346 683 187 79 61 chr3 99778528 99778624 -59821159 - RLTR20A2 LTR ERVK 0 578 481 3 1346 504 0 0 0 chr3 99778624 99778680 -59821103 + (CA)n Simple_repeat Simple_repeat 2 57 0 3 1346 1102 206 99 50 chr3 99778680 99779030 -59820753 - RLTR20A2 LTR ERVK -98 480 1 3 1346 253 257 0 39 chr3 99781230 99781307 -59818476 + L2 LINE L2 842 915 -2504 3 1346 191 294 0 0 chr3 99781678 99781729 -59818054 + L2 LINE L2 1369 1419 -2000 3 1346 441 0 0 0 chr3 99781797 99781846 -59817937 + (CA)n Simple_repeat Simple_repeat 1 49 0 3 1346 1644 212 117 70 chr3 99782577 99783123 -59816660 - RLTR26 LTR ERVK 0 642 1 3 1346 249 389 75 4 chr3 99783161 99783401 -59816382 + L2 LINE L2 2478 2734 -685 3 1346 648 0 0 0 chr3 99784094 99784166 -59815617 + (TTC)n Simple_repeat Simple_repeat 1 72 0 3 1346 201 345 0 0 chr3 99784302 99784412 -59815371 + (CTG)n Simple_repeat Simple_repeat 1 110 0 3 1346 26 30 0 0 chr3 99784851 99784884 -59814899 + AT_rich Low_complexity Low_complexity 1 33 0 3 1346 877 232 13 10 chr3 99785017 99785317 -59814466 - GSAT_MM Satellite Satellite -153 318 18 3 1346 812 201 18 18 chr3 99785882 99786049 -59813734 - MTB_Mm LTR MaLR 0 407 241 3 1346 499 291 67 0 chr3 99786639 99786773 -59813010 + RSINE1 SINE B4 6 148 -17 3 1346 504 105 0 0 chr3 99786789 99786865 -59812918 + (CA)n Simple_repeat Simple_repeat 1 76 0 3 1346 739 187 80 8 chr3 99786960 99787163 -59812620 - Lx4B LINE L1 -2 7056 6826 3 1346 441 36 0 0 chr3 99788998 99789053 -59810730 + (TG)n Simple_repeat Simple_repeat 2 56 0 3 1346 718 282 0 0 chr3 99789056 99789198 -59810585 - B3A SINE B2 -52 146 5 3 1346 251 339 0 18 chr3 99789591 99789702 -59810081 - MIR SINE MIR -2 260 152 3 1346 2174 250 111 14 chr3 99789903 99790551 -59809232 - Lx7 LINE L1 -333 7363 6653 3 1346 6176 210 29 49 chr3 99790549 99791039 -59808744 - L1_Mur3 LINE L1 -468 5412 4945 3 1346 270 0 0 0 chr3 99791039 99791069 -59808714 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 3 1346 6176 210 29 49 chr3 99791069 99792283 -59807500 - L1_Mur3 LINE L1 -936 4944 3742 3 1346 17791 158 74 7 chr3 99792284 99796814 -59802969 - Lx LINE L1 -2 6652 1799 3 1346 770 102 8 0 chr3 99796816 99796934 -59802849 + (TTCC)n Simple_repeat Simple_repeat 3 121 0 3 1346 4590 95 2 0 chr3 99796959 99797589 -59802194 - L1_Mus2 LINE L1 -2 6564 5934 3 1346 28659 109 2 29 chr3 99797589 99801967 -59797816 - L1VL4 LINE L1 -61 5822 1503 3 1346 1159 62 7 0 chr3 99801967 99802112 -59797671 + B1_Mm SINE Alu 1 146 -1 3 1346 28659 109 2 29 chr3 99802112 99802137 -59797646 - L1_Mm LINE L1 -4381 1502 1502 3 1346 1000 139 0 16 chr3 99802137 99802320 -59797463 + GA-rich Low_complexity Low_complexity 1 180 0 3 1346 28659 172 17 98 chr3 99802320 99803646 -59796137 - L1VL4 LINE L1 -4381 1502 386 3 1346 5189 88 22 33 chr3 99803637 99804887 -59794896 - L1VL4 LINE L1 -2107 1452 215 3 1346 1150 224 95 29 chr3 99804896 99805305 -59794478 - L1_Mur3 LINE L1 -2123 3757 3322 3 1346 1924 123 50 3 chr3 99805306 99805608 -59794175 - RLTR14 LTR ERV1 -49 333 18 3 1346 4251 211 92 27 chr3 99805610 99807128 -59792655 - L1_Mur3 LINE L1 -3359 2521 893 3 1346 477 0 0 0 chr3 99807528 99807581 -59792202 + (TC)n Simple_repeat Simple_repeat 1 53 0 3 1346 279 0 0 0 chr3 99807761 99807792 -59791991 + (CA)n Simple_repeat Simple_repeat 2 32 0 3 1346 555 276 14 43 chr3 99807808 99807948 -59791835 + B1F SINE Alu 8 143 -6 3 1346 209 119 0 23 chr3 99809214 99809257 -59790526 + (GGGGA)n Simple_repeat Simple_repeat 4 45 0 3 1346 506 201 30 34 chr3 99809263 99809501 -59790282 + GA-rich Low_complexity Low_complexity 1 237 0 3 1346 337 284 83 55 chr3 99809509 99809743 -59790040 + HAL1-3A_ME LINE L1 2284 2439 -419 3 1346 338 269 156 7 chr3 99809764 99809899 -59789884 + HAL1-3A_ME LINE L1 2285 2439 -419 3 1346 528 254 6 11 chr3 99809905 99810084 -59789699 + GA-rich Low_complexity Low_complexity 1 178 0 3 1346 1639 222 45 0 chr3 99810198 99810594 -59789189 + Lx9 LINE L1 7006 7419 -225 3 1346 219 119 48 0 chr3 99810806 99810848 -59788935 + (TTTG)n Simple_repeat Simple_repeat 3 46 0 3 1346 754 294 177 0 chr3 99810950 99811198 -59788585 + B4A SINE B4 1 292 0 3 1346 215 154 26 0 chr3 99811201 99811240 -59788543 + GA-rich Low_complexity Low_complexity 1 40 0 3 1346 203 0 37 0 chr3 99811661 99811688 -59788095 + (TTTTA)n Simple_repeat Simple_repeat 2 29 0 3 1346 833 178 13 18 chr3 99812632 99813058 -59786725 + GA-rich Low_complexity Low_complexity 1 423 0 3 1346 2500 147 34 12 chr3 99814999 99815411 -59784372 + MTC LTR MaLR 1 421 0 3 1346 734 247 90 11 chr3 99815648 99815836 -59783947 - MTD LTR MaLR -1 418 216 3 1346 812 238 48 26 chr3 99815829 99816162 -59783621 + MTD-int LTR MaLR 866 1241 -17 3 1346 1560 203 131 9 chr3 99816212 99816578 -59783205 + MTD LTR MaLR 14 406 -13 3 1346 429 54 0 0 chr3 99817406 99817462 -59782321 + (TC)n Simple_repeat Simple_repeat 2 57 0 3 1346 366 42 0 0 chr3 99817462 99817510 -59782273 + (CA)n Simple_repeat Simple_repeat 1 48 0 3 1346 1717 201 68 40 chr3 99817587 99817982 -59781801 + MTD LTR MaLR 2 407 -12 4 1346 394 306 40 33 chr3 99818064 99818216 -59781567 - B3A SINE B2 0 216 64 4 1346 22599 156 32 11 chr3 99818787 99821699 -59778084 + L1VL4 LINE L1 513 3478 -2405 4 1346 180 0 0 0 chr3 99821699 99821719 -59778064 + (CAA)n Simple_repeat Simple_repeat 2 21 0 4 1346 22599 144 24 11 chr3 99821719 99823716 -59776067 + L1VL4 LINE L1 3479 5516 -367 4 1346 336 328 88 28 chr3 99823716 99823898 -59775885 + MER20 DNA MER1_type 26 218 -1 4 1346 1114 249 96 74 chr3 99823985 99824480 -59775303 + RMER13A LTR ERVK 30 558 -350 4 1346 227 305 47 47 chr3 99824712 99824798 -59774985 + MIRc SINE MIR 94 179 -89 4 1346 503 299 80 11 chr3 99825956 99826132 -59773651 + B3A SINE B2 5 192 -6 4 1346 264 149 0 0 chr3 99826467 99826514 -59773269 + (T)n Simple_repeat Simple_repeat 1 47 0 4 1346 207 162 0 0 chr3 99827010 99827047 -59772736 + (TAGA)n Simple_repeat Simple_repeat 4 40 0 4 1346 272 355 0 0 chr3 99828098 99828174 -59771609 - ID4_ SINE ID -4 79 4 4 1346 3555 38 0 9 chr3 99828514 99828944 -59770839 + L1Md_F2 LINE L1 6145 6570 -12 4 1346 251 243 0 14 chr3 99829049 99829120 -59770663 + Lx8 LINE L1 7395 7464 -9 4 1346 309 274 0 9 chr3 99829130 99829237 -59770546 + L1M3 LINE L1 3678 3783 -2357 4 1346 1067 96 7 0 chr3 99830744 99830890 -59768893 - B1_Mus1 SINE Alu 0 148 2 4 1346 25 51 0 0 chr3 99831842 99831881 -59767902 + AT_rich Low_complexity Low_complexity 1 39 0 4 1346 319 305 59 37 chr3 99832432 99832704 -59767079 + L1M5 LINE L1 2709 2986 -3160 4 1346 538 94 19 19 chr3 99832894 99833002 -59766781 + (CAGAGA)n Simple_repeat Simple_repeat 2 109 0 4 1346 305 212 15 0 chr3 99833420 99833486 -59766297 + ID4 SINE ID 7 73 -10 4 1346 286 333 88 34 chr3 99833500 99833885 -59765898 + L1M5 LINE L1 3356 3761 -2385 4 1346 998 47 0 23 chr3 99834884 99835015 -59764768 - L1Md_F2 LINE L1 -12 6570 6443 4 1346 320 188 70 28 chr3 99835139 99835210 -59764573 + HAL1-3A_ME LINE L1 1976 2049 -809 4 1346 189 0 0 0 chr3 99836790 99836811 -59762972 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 4 1346 546 63 0 0 chr3 99838226 99838305 -59761478 + (GA)n Simple_repeat Simple_repeat 1 79 0 4 1346 336 161 0 0 chr3 99838791 99838853 -59760930 + CT-rich Low_complexity Low_complexity 2 63 0 4 1346 553 231 137 29 chr3 99839710 99839915 -59759868 + Charlie5 DNA MER1_type 2376 2602 -22 4 1346 21 36 0 0 chr3 99840821 99840849 -59758934 + AT_rich Low_complexity Low_complexity 1 28 0 4 1346 602 49 12 0 chr3 99841195 99841277 -59758506 + (GA)n Simple_repeat Simple_repeat 2 84 0 4 1346 461 340 34 60 chr3 99841404 99841485 -59758298 - MLT1A LTR MaLR -3 371 292 4 1346 3306 73 2 2 chr3 99841485 99841881 -59757902 + MTA_Mm LTR MaLR 1 396 0 4 1346 461 340 34 60 chr3 99841881 99842068 -59757715 - MLT1A LTR MaLR -83 291 111 4 1346 3228 236 106 58 chr3 99843323 99844358 -59755425 - RMER1C Other Other 0 1342 255 4 1346 324 0 0 0 chr3 99844358 99844394 -59755389 + (TG)n Simple_repeat Simple_repeat 2 37 0 4 1346 3228 202 37 44 chr3 99844394 99844715 -59755068 - RMER1C Other Other -1088 254 108 4 1346 289 313 33 71 chr3 99845048 99845291 -59754492 - L1M4 LINE L1 -2386 3760 3519 4 1346 339 279 17 51 chr3 99845354 99845471 -59754312 + PB1D7 SINE Alu 1 113 -7 4 1346 657 121 0 20 chr3 99845506 99845607 -59754176 + BC1_Mm scRNA scRNA 1 99 -53 4 1346 396 323 97 8 chr3 99845908 99846167 -59753616 + L1M3 LINE L1 2110 2391 -3749 4 1346 848 262 131 19 chr3 99846169 99846617 -59753166 + L1M3 LINE L1 4093 4611 -1535 4 1346 846 264 5 36 chr3 99846617 99846837 -59752946 + B3 SINE B2 2 214 -2 4 1346 552 311 148 28 chr3 99846837 99846888 -59752895 + L1M3 LINE L1 4612 4658 -1488 4 1346 441 0 0 0 chr3 99847108 99847157 -59752626 + (TG)n Simple_repeat Simple_repeat 2 50 0 4 1346 344 205 12 37 chr3 99847828 99847909 -59751874 - ORR1C1 LTR MaLR -10 368 290 4 1346 4035 225 94 18 chr3 99847907 99848179 -59751604 - ORR1C1-int LTR MaLR -65 1305 1000 4 1346 315 0 0 0 chr3 99848179 99848214 -59751569 + (TC)n Simple_repeat Simple_repeat 1 35 0 4 1346 4035 225 94 18 chr3 99848214 99849021 -59750762 - ORR1C1-int LTR MaLR -371 999 143 4 1346 319 196 0 0 chr3 99849020 99849076 -59750707 - B4 SINE B4 -235 57 2 4 1346 8140 14 0 0 chr3 99849142 99850005 -59749778 + L1Md_A LINE L1 5720 6582 0 4 1346 701 36 12 0 chr3 99850006 99850090 -59749693 + Lx3A LINE L1 5822 5906 -1103 4 1346 225 0 0 0 chr3 99850090 99850115 -59749668 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 4 1346 6747 92 27 28 chr3 99850115 99851073 -59748710 + Lx3A LINE L1 6014 6970 -11 4 1346 501 17 0 0 chr3 99851080 99851138 -59748645 + (GAAA)n Simple_repeat Simple_repeat 3 60 0 4 1346 289 264 24 30 chr3 99851141 99851305 -59748478 + GA-rich Low_complexity Low_complexity 4 166 0 4 1346 554 41 14 0 chr3 99851337 99851410 -59748373 + (GGAA)n Simple_repeat Simple_repeat 3 76 0 4 1346 218 352 98 61 chr3 99851413 99851504 -59748279 - L2 LINE L2 -584 2835 2748 4 1346 231 36 0 0 chr3 99851504 99851532 -59748251 + (CA)n Simple_repeat Simple_repeat 2 29 0 4 1346 218 352 98 61 chr3 99851532 99851685 -59748098 - L2 LINE L2 -672 2747 2582 4 1346 660 59 0 0 chr3 99852007 99852092 -59747691 + (GA)n Simple_repeat Simple_repeat 2 86 0 4 1346 231 291 93 43 chr3 99852270 99852410 -59747373 - Tigger13a DNA MER2_type -498 273 127 4 1346 537 233 130 12 chr3 99852638 99852799 -59746984 + B3A SINE B2 9 188 -10 4 1346 1064 304 65 49 chr3 99855239 99855609 -59744174 - MER21B LTR ERV1 -487 376 1 4 1346 335 294 59 27 chr3 99855630 99855850 -59743933 - L1MEg LINE L1 -4645 1439 1213 4 1346 655 282 110 40 chr3 99855858 99856186 -59743597 - MER63D DNA AcHobo -10 1051 701 4 1346 249 98 0 0 chr3 99856313 99856354 -59743429 + (TTG)n Simple_repeat Simple_repeat 2 42 0 4 1346 703 301 113 26 chr3 99856389 99856733 -59743050 - MER63D DNA AcHobo -687 374 1 4 1346 240 308 0 0 chr3 99857680 99857745 -59742038 + GA-rich Low_complexity Low_complexity 4 68 0 4 1346 270 0 0 0 chr3 99857933 99857963 -59741820 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 4 1346 430 298 10 0 chr3 99858547 99858651 -59741132 + PB1D10 SINE Alu 10 114 -3 4 1346 333 197 0 0 chr3 99860163 99860239 -59739544 + GA-rich Low_complexity Low_complexity 2 77 0 4 1346 868 267 91 4 chr3 99861068 99861320 -59738463 + B4A SINE B4 1 274 -18 4 1346 480 86 0 0 chr3 99861336 99861406 -59738377 + (TG)n Simple_repeat Simple_repeat 1 70 0 4 1346 268 306 16 0 chr3 99861413 99861475 -59738308 - ID4_ SINE ID -13 70 8 4 1346 974 262 109 20 chr3 99861491 99862079 -59737704 - L1MD3 LINE L1 -2169 5826 5176 4 1346 207 204 0 0 chr3 99862954 99863008 -59736775 + (TG)n Simple_repeat Simple_repeat 2 55 0 4 1346 241 307 118 10 chr3 99863818 99863920 -59735863 - MER5B DNA MER1_type -60 118 6 4 1346 404 96 16 73 chr3 99865001 99865125 -59734658 + (CA)n Simple_repeat Simple_repeat 1 117 0 4 1346 692 314 75 32 chr3 99865152 99865500 -59734283 - MLT1A0 LTR MaLR 0 365 3 4 1346 550 207 0 22 chr3 99866022 99866160 -59733623 + L1Md_T LINE L1 6446 6580 -2 4 1346 1229 82 0 0 chr3 99866169 99866316 -59733467 + B1_Mus1 SINE Alu 2 148 0 4 1346 346 335 84 17 chr3 99866415 99866594 -59733189 - MIRb SINE MIR -12 256 66 4 1346 222 175 17 17 chr3 99867099 99867157 -59732626 + A-rich Low_complexity Low_complexity 3 60 0 4 1346 666 261 32 32 chr3 99868209 99868367 -59731416 + RSINE1 SINE B4 7 164 -1 4 1346 321 26 0 0 chr3 99868380 99868418 -59731365 + (CATA)n Simple_repeat Simple_repeat 3 40 0 4 1346 198 0 0 0 chr3 99868493 99868515 -59731268 + (GA)n Simple_repeat Simple_repeat 2 23 0 4 1346 294 106 0 0 chr3 99868516 99868563 -59731220 + (TAGA)n Simple_repeat Simple_repeat 2 48 0 4 1346 260 362 0 0 chr3 99870564 99870644 -59729139 - L1MEf LINE L1 -3450 2950 2871 4 1346 760 308 58 30 chr3 99870658 99870953 -59728830 - MER58B DNA MER1_type -2 339 37 4 1346 317 293 66 60 chr3 99871110 99871277 -59728506 - L1MEf LINE L1 -3630 2770 2603 4 1346 226 303 80 10 chr3 99871354 99871454 -59728329 - L1MEf LINE L1 -3981 2515 2409 4 1346 261 300 12 0 chr3 99871459 99871539 -59728244 - L1MEf LINE L1 -4557 1863 1783 4 1346 323 352 39 15 chr3 99871705 99871835 -59727948 - L1MEf LINE L1 -4993 1503 1371 4 1346 3635 265 45 28 chr3 99872015 99873118 -59726665 - Lx9 LINE L1 0 7644 6523 4 1346 335 197 70 0 chr3 99873116 99873187 -59726596 + Lx2A1 LINE L1 5794 5869 -1139 4 1346 851 276 5 0 chr3 99873372 99873568 -59726215 + Lx9 LINE L1 6332 6528 -1116 4 1346 247 233 0 32 chr3 99874938 99875000 -59724783 + GA-rich Low_complexity Low_complexity 3 62 0 4 1346 387 219 0 0 chr3 99876191 99876287 -59723496 + (TGGG)n Simple_repeat Simple_repeat 2 97 0 4 1346 428 77 15 0 chr3 99876340 99876405 -59723378 + (TG)n Simple_repeat Simple_repeat 2 67 0 4 1346 339 25 0 0 chr3 99876505 99876545 -59723238 + (TGG)n Simple_repeat Simple_repeat 1 40 0 4 1346 281 145 194 0 chr3 99876549 99876611 -59723172 - PB1D10 SINE Alu -10 107 34 4 1347 241 341 155 0 chr3 99877693 99877822 -59721961 - MIR SINE MIR -30 232 84 4 1347 601 276 64 6 chr3 99877861 99878032 -59721751 - MLT1A0 LTR MaLR -166 199 19 4 1347 621 301 99 60 chr3 99878575 99878939 -59720844 + MTEa LTR MaLR 1 378 -1 4 1347 252 0 0 0 chr3 99880141 99880169 -59719614 + (CATA)n Simple_repeat Simple_repeat 3 30 0 4 1347 447 19 0 0 chr3 99880308 99880360 -59719423 + (CA)n Simple_repeat Simple_repeat 1 52 0 4 1347 1691 169 91 3 chr3 99882009 99882318 -59717465 + ORR1B2 LTR MaLR 32 367 0 4 1347 743 300 88 9 chr3 99882806 99883149 -59716634 - Lx9 LINE L1 -22 7622 7253 4 1347 381 294 147 0 chr3 99883159 99883329 -59716454 + L1MB8 LINE L1 5821 6015 -163 4 1347 492 278 58 36 chr3 99883338 99883562 -59716221 + L1MB8 LINE L1 5942 6170 -8 4 1347 1959 176 21 38 chr3 99884186 99884559 -59715224 - ORR1B2 LTR MaLR 0 367 1 4 1347 427 333 43 22 chr3 99885172 99885402 -59714381 + MER58B DNA MER1_type 105 339 -2 4 1347 1280 48 7 0 chr3 99886663 99886809 -59712974 + B1_Mm SINE Alu 1 147 0 4 1347 474 146 0 0 chr3 99886952 99887034 -59712749 + (TA)n Simple_repeat Simple_repeat 2 83 0 4 1347 261 208 0 54 chr3 99887263 99887319 -59712464 + PB1D10 SINE Alu 65 117 0 4 1347 2231 38 0 0 chr3 99887583 99887848 -59711935 - L1_Mus2 LINE L1 -579 5987 5723 4 1347 4418 82 12 4 chr3 99887848 99888408 -59711375 + L1_Mus2 LINE L1 6002 6566 0 4 1347 23 0 0 0 chr3 99888426 99888449 -59711334 + AT_rich Low_complexity Low_complexity 1 23 0 5 1347 492 18 0 0 chr3 99888569 99888626 -59711157 + (TG)n Simple_repeat Simple_repeat 2 58 0 5 1347 231 36 0 0 chr3 99889752 99889780 -59710003 + (GA)n Simple_repeat Simple_repeat 2 29 0 5 1347 799 295 89 14 chr3 99891054 99891412 -59708371 + MTD LTR MaLR 1 385 -34 5 1347 496 272 0 9 chr3 99891443 99891558 -59708225 - PB1D9 SINE Alu -4 116 3 5 1347 287 258 0 110 chr3 99891475 99891575 -59708208 - MT2B LTR ERVL -361 240 152 5 1347 756 252 178 31 chr3 99892884 99893293 -59706490 - RMER12 LTR ERVK 0 1322 803 5 1347 255 61 0 0 chr3 99893293 99893326 -59706457 + (TG)n Simple_repeat Simple_repeat 2 34 0 5 1347 688 219 130 110 chr3 99893326 99893479 -59706304 - RMER12 LTR ERVK -540 1308 1165 5 1347 1102 249 79 134 chr3 99893623 99893871 -59705912 - RMER12 LTR ERVK -1110 738 561 5 1347 7291 96 24 31 chr3 99893871 99894561 -59705222 - Lx3A LINE L1 0 6981 6281 5 1347 3838 146 57 84 chr3 99894561 99895490 -59704293 + RMER17A2 LTR ERVK 3 906 0 5 1347 7291 96 24 31 chr3 99895490 99895914 -59703869 - Lx3A LINE L1 -701 6280 5875 5 1347 1182 232 61 66 chr3 99895914 99896446 -59703337 - RMER12 LTR ERVK -1288 560 1 5 1347 213 121 0 0 chr3 99897233 99897266 -59702517 + (TAGA)n Simple_repeat Simple_repeat 4 36 0 5 1347 284 299 106 28 chr3 99898390 99898569 -59701214 + MER53 DNA hAT 1 193 0 5 1347 336 342 40 7 chr3 99898798 99898948 -59700835 - MER103 DNA DNA 0 166 12 5 1347 212 59 29 0 chr3 99899392 99899426 -59700357 + (TAAAAA)n Simple_repeat Simple_repeat 1 35 0 5 1347 257 346 75 21 chr3 99900282 99900468 -59699315 - MER34A LTR ERV1 0 571 376 5 1347 243 0 0 0 chr3 99900642 99900669 -59699114 + (A)n Simple_repeat Simple_repeat 1 27 0 5 1347 257 100 20 0 chr3 99900758 99900808 -59698975 + (TTTG)n Simple_repeat Simple_repeat 2 52 0 5 1347 2589 46 0 0 chr3 99901338 99901642 -59698141 + L1Md_F2 LINE L1 5283 5586 -297 5 1347 8267 47 4 0 chr3 99901642 99902634 -59697149 + L1Md_F2 LINE L1 5587 6582 0 5 1347 31 0 0 0 chr3 99902634 99902665 -59697118 + AT_rich Low_complexity Low_complexity 1 31 0 5 1347 744 68 0 0 chr3 99902740 99902843 -59696940 - B1_Mus2 SINE Alu 0 147 45 5 1347 632 211 22 22 chr3 99903872 99904008 -59695775 + B1_Mur1 SINE Alu 6 141 -8 5 1347 1965 114 61 61 chr3 99904548 99904875 -59694908 - ORR1A2 LTR MaLR 0 327 1 5 1347 261 306 16 47 chr3 99905842 99905969 -59693814 + L1MC4 LINE L1 7453 7575 -467 5 1347 406 325 32 0 chr3 99907480 99907603 -59692180 - B4A SINE B4 -162 130 4 5 1347 245 186 28 14 chr3 99907611 99907682 -59692101 + (TA)n Simple_repeat Simple_repeat 2 73 0 5 1347 877 216 5 16 chr3 99907726 99907910 -59691873 + B3 SINE B2 31 212 -4 5 1347 372 196 123 0 chr3 99907917 99908007 -59691776 + PB1D10 SINE Alu 28 125 -2 5 1347 912 260 26 30 chr3 99908112 99908382 -59691401 + B4A SINE B4 9 277 -15 5 1347 378 42 0 0 chr3 99908392 99908440 -59691343 + (CA)n Simple_repeat Simple_repeat 1 48 0 5 1347 456 19 0 0 chr3 99908440 99908492 -59691291 + (GA)n Simple_repeat Simple_repeat 2 54 0 5 1347 338 0 24 0 chr3 99908505 99908547 -59691236 + (CATA)n Simple_repeat Simple_repeat 2 44 0 5 1347 338 121 15 0 chr3 99909181 99909247 -59690536 + (CAGA)n Simple_repeat Simple_repeat 2 68 0 5 1347 3695 38 9 34 chr3 99909290 99909757 -59690026 + L1Md_A LINE L1 6128 6582 0 5 1347 318 26 0 0 chr3 99910345 99910384 -59689399 + (CA)n Simple_repeat Simple_repeat 1 39 0 5 1347 255 61 0 0 chr3 99910475 99910508 -59689275 + (TTAA)n Simple_repeat Simple_repeat 3 35 0 5 1347 235 303 103 90 chr3 99911344 99911500 -59688283 - RLTR42 LTR ERVK -19 220 63 5 1347 480 18 0 0 chr3 99912540 99912597 -59687186 + (TA)n Simple_repeat Simple_repeat 2 58 0 5 1347 329 328 44 22 chr3 99912846 99912983 -59686800 + MER5A DNA MER1_type 15 154 -35 5 1347 205 288 24 0 chr3 99913008 99913073 -59686710 + MIRb SINE MIR 14 83 -185 5 1347 1721 184 113 11 chr3 99913759 99914139 -59685644 - MTD LTR MaLR 0 419 1 5 1347 311 141 250 80 chr3 99914415 99914515 -59685268 - B3A SINE B2 -80 118 2 5 1347 822 305 65 35 chr3 99914518 99914961 -59684822 - L1MA9 LINE L1 -281 6733 6283 5 1347 585 0 0 0 chr3 99914961 99915026 -59684757 + (TC)n Simple_repeat Simple_repeat 2 66 0 5 1347 522 323 166 40 chr3 99915026 99915040 -59684743 - L1MA9 LINE L1 -591 6282 6264 5 1347 207 0 0 0 chr3 99915040 99915063 -59684720 + (TTG)n Simple_repeat Simple_repeat 2 24 0 5 1347 1120 50 7 7 chr3 99915063 99915205 -59684578 - B1_Mm SINE Alu -3 144 3 5 1347 576 274 83 48 chr3 99915205 99915762 -59684021 - L1MA9 LINE L1 -610 6263 5608 5 1347 3423 168 52 14 chr3 99915763 99916421 -59683362 - Lx4B LINE L1 -4 7054 6372 5 1347 379 267 64 70 chr3 99916427 99916584 -59683199 + MTEb LTR MaLR 224 379 0 5 1347 1160 79 0 41 chr3 99916677 99916870 -59682913 - L1Md_F2 LINE L1 0 6582 6396 5 1347 541 241 123 5 chr3 99916867 99917195 -59682588 - L1MA9 LINE L1 -2720 4128 3727 5 1347 1834 252 57 11 chr3 99917195 99917720 -59682063 - RMER15 LTR ERVL 0 575 27 5 1347 721 313 99 25 chr3 99917800 99918267 -59681516 - L1MA9 LINE L1 -3117 3728 3241 5 1347 1289 69 0 49 chr3 99918267 99918451 -59681332 - B2_Mm2 SINE B2 -17 178 4 5 1347 721 313 99 25 chr3 99918451 99918507 -59681276 - L1MA9 LINE L1 -3605 3240 3167 5 1347 332 211 26 13 chr3 99918866 99918943 -59680840 - L1MA9 LINE L1 -3857 2985 2908 5 1347 3098 128 6 15 chr3 99919643 99920165 -59679618 + RLTR28 LTR ERVL 3 519 -5 5 1347 189 0 0 0 chr3 99921190 99921211 -59678572 + (TTTG)n Simple_repeat Simple_repeat 4 24 0 5 1347 355 232 115 9 chr3 99921221 99921334 -59678449 - B1_Mur1 SINE Alu -20 129 5 5 1347 861 309 66 0 chr3 99921564 99921913 -59677870 - L1MA9 LINE L1 -4171 2678 2307 5 1347 378 0 0 0 chr3 99923514 99923556 -59676227 + (TG)n Simple_repeat Simple_repeat 2 43 0 5 1347 606 63 0 0 chr3 99923785 99923864 -59675919 + (CAGA)n Simple_repeat Simple_repeat 2 80 0 5 1347 607 280 32 59 chr3 99923951 99924171 -59675612 + B3 SINE B2 1 214 -2 5 1347 1382 74 15 31 chr3 99924439 99924634 -59675149 - B2_Mm1t SINE B2 0 193 2 5 1347 544 218 113 71 chr3 99924652 99924820 -59674963 + L1MA6 LINE L1 6136 6310 -2 5 1347 433 216 125 33 chr3 99925563 99925683 -59674100 + RSINE1 SINE B4 2 132 -33 5 1347 703 156 95 15 chr3 99927243 99927380 -59672403 - B1_Mur4 SINE Alu -2 148 1 5 1347 217 299 0 38 chr3 99927907 99928008 -59671775 - MIRm SINE MIR -99 177 79 5 1347 1023 216 201 27 chr3 99928595 99928928 -59670855 - RMER17B LTR ERVK -1 957 567 5 1347 38672 30 1 1 chr3 99929473 99936375 -59663408 - L1Md_T LINE L1 0 6585 1 5 1347 198 71 0 0 chr3 99936580 99936608 -59663175 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 5 1347 435 277 23 0 chr3 99936740 99936870 -59662913 - ORR1E LTR MaLR -226 133 1 5 1347 6524 199 72 20 chr3 99936920 99938322 -59661461 - Lx6 LINE L1 -10 7450 5976 5 1347 2775 51 0 3 chr3 99938306 99938640 -59661143 - L1Md_F2 LINE L1 -132 5751 5419 5 1347 7139 43 2 5 chr3 99938640 99939502 -59660281 + L1Md_F2 LINE L1 5718 6577 -5 5 1347 4928 184 99 24 chr3 99939590 99940256 -59659527 - Lx6 LINE L1 -1727 5969 5279 5 1347 1102 112 37 21 chr3 99940256 99940447 -59659336 - B2_Mm2 SINE B2 0 195 2 5 1347 4928 196 149 38 chr3 99940447 99941267 -59658516 - Lx6 LINE L1 -599 5278 4323 5 1347 306 269 184 6 chr3 99941304 99941472 -59658311 - Charlie1b DNA MER1_type -221 302 105 5 1347 380 251 233 6 chr3 99943322 99943502 -59656281 + B4 SINE B4 1 221 -71 5 1347 410 219 78 35 chr3 99943507 99943649 -59656134 + B1F2 SINE Alu 2 149 0 5 1347 1844 181 69 11 chr3 99947861 99948208 -59651575 + ORR1B2 LTR MaLR 1 367 0 5 1347 784 40 0 0 chr3 99949077 99949178 -59650605 - B1_Mm SINE Alu 0 147 47 5 1347 249 211 17 34 chr3 99949126 99949185 -59650598 - RLTR25A LTR ERVK -531 572 515 5 1347 805 188 6 18 chr3 99950111 99950279 -59649504 - Lx6 LINE L1 -1 7459 7294 5 1347 926 174 204 0 chr3 99951608 99951780 -59648003 + B3 SINE B2 4 210 -6 5 1347 233 138 224 0 chr3 99953087 99953145 -59646638 + PB1D10 SINE Alu 32 102 -15 5 1347 499 224 28 0 chr3 99954212 99954319 -59645464 - B3 SINE B2 -1 215 106 5 1347 369 0 0 0 chr3 99955234 99955275 -59644508 + (CA)n Simple_repeat Simple_repeat 1 41 0 5 1347 702 229 0 56 chr3 99955333 99955495 -59644288 - RSINE1 SINE B4 -2 163 11 5 1347 391 347 11 17 chr3 99957176 99957355 -59642428 - B3A SINE B2 -16 182 5 5 1347 543 16 0 0 chr3 99957640 99957704 -59642079 + (CA)n Simple_repeat Simple_repeat 2 65 0 5 1347 517 96 11 11 chr3 99958666 99958761 -59641022 + L1Md_F2 LINE L1 6488 6582 0 5 1347 1420 187 146 151 chr3 99959516 99960052 -59639731 + MT2A LTR ERVL 1 533 0 5 1347 350 188 0 12 chr3 99960941 99961022 -59638761 + MADE2 DNA Mariner 1 80 0 5 1347 293 333 90 34 chr3 99961804 99962071 -59637712 - L1M5 LINE L1 -381 5743 5462 5 1347 687 266 75 17 chr3 99962105 99962324 -59637459 - ID_B1 SINE B4 -63 229 6 5 1347 980 37 80 106 chr3 99962582 99962704 -59637079 - B1_Mus1 SINE Alu 0 148 28 5 1347 1439 78 5 5 chr3 99962704 99962896 -59636887 + B2_Mm1a SINE B2 2 193 0 5 1347 980 37 80 106 chr3 99962896 99962924 -59636859 - B1_Mus1 SINE Alu -121 27 2 5 1347 348 273 55 0 chr3 99963050 99963178 -59636605 - Lx7 LINE L1 -382 7314 7180 5 1347 400 221 8 131 chr3 99963224 99963354 -59636429 - PB1D9 SINE Alu -6 114 1 5 1347 199 123 25 128 chr3 99963973 99964169 -59635614 + (CATATA)n Simple_repeat Simple_repeat 5 180 0 5 1347 1259 34 0 0 chr3 99967212 99967358 -59632425 - B1_Mus2 SINE Alu 0 147 2 5 1347 538 211 62 0 chr3 99967799 99967927 -59631856 - B1_Mur2 SINE Alu -13 136 1 5 1347 497 231 146 0 chr3 99968560 99968690 -59631093 - B1_Mur3 SINE Alu 0 149 1 5 1347 607 281 108 25 chr3 99969860 99970064 -59629719 + B4A SINE B4 71 291 -1 5 1347 255 193 33 45 chr3 99970109 99970225 -59629558 + PB1D10 SINE Alu 1 116 -33 5 1347 295 194 75 0 chr3 99970231 99970298 -59629485 + ID4_ SINE ID 2 73 -10 5 1347 240 233 38 14 chr3 99971369 99971461 -59628322 + PB1D7 SINE Alu 1 98 -22 5 1347 357 358 58 41 chr3 99971994 99972285 -59627498 + L2 LINE L2 2162 2457 -962 6 1347 318 337 9 19 chr3 99973245 99973351 -59626432 - B3 SINE B2 -111 105 1 6 1347 270 326 26 46 chr3 99974191 99974342 -59625441 - L1MA10 LINE L1 0 6334 6187 6 1347 247 149 227 13 chr3 99974324 99974399 -59625384 - L1MB7 LINE L1 -183 5995 5905 6 1347 237 220 0 0 chr3 99975184 99975234 -59624549 + MTC LTR MaLR 33 82 -339 6 1347 1821 95 11 21 chr3 99975234 99975514 -59624269 + L1_Mus4 LINE L1 6358 6634 -2 6 1347 911 157 17 39 chr3 99975526 99975705 -59624078 + MTC LTR MaLR 65 239 -182 6 1347 193 260 40 0 chr3 99976139 99976189 -59623594 + L2c LINE L2 3331 3382 -5 6 1347 744 141 28 8 chr3 99976333 99976491 -59623292 - B2_Mm2 SINE B2 -19 174 3 6 1347 746 82 0 18 chr3 99978705 99978817 -59620966 + (GAGAA)n Simple_repeat Simple_repeat 4 113 0 6 1347 367 220 110 0 chr3 99978861 99978952 -59620831 - PB1D10 SINE Alu -15 102 2 6 1347 306 275 114 8 chr3 99980270 99980313 -59619470 - B1F SINE Alu -3 146 97 6 1347 514 93 10 30 chr3 99980313 99980413 -59619370 + (TA)n Simple_repeat Simple_repeat 1 98 0 6 1347 306 275 114 8 chr3 99980413 99980501 -59619282 - B1F SINE Alu -53 96 3 6 1347 226 280 84 46 chr3 99980503 99980634 -59619149 - MLT1A LTR MaLR -4 386 251 6 1347 275 325 68 57 chr3 99980650 99980826 -59618957 - MLT1A LTR MaLR -196 178 1 6 1347 1431 91 0 0 chr3 99982525 99982722 -59617061 - L1_Mus1 LINE L1 0 6567 6371 6 1347 276 295 26 0 chr3 99983318 99983396 -59616387 + ID4_ SINE ID 2 81 -2 6 1347 237 319 14 0 chr3 99985141 99985213 -59614570 - Tigger5 DNA MER2_type 0 2406 2334 6 1347 1229 48 0 0 chr3 99985644 99985791 -59613992 + B1_Mus2 SINE Alu 1 147 0 6 1347 613 264 30 30 chr3 99985938 99986102 -59613681 + RSINE1 SINE B4 1 164 -1 6 1347 213 175 0 0 chr3 99987362 99987402 -59612381 + G-rich Low_complexity Low_complexity 4 43 0 6 1347 276 351 26 32 chr3 99987402 99987558 -59612225 - MER74B LTR ERVL -408 214 60 6 1347 1402 64 26 11 chr3 99987567 99987756 -59612027 - B2_Mm1t SINE B2 0 193 2 6 1347 301 189 87 87 chr3 99987767 99987871 -59611912 + L1MB5 LINE L1 5350 5453 -731 6 1347 1059 80 0 0 chr3 99987956 99988094 -59611689 - B1_Mus1 SINE Alu -9 139 2 6 1347 390 308 145 26 chr3 99988105 99988568 -59611215 + L1MB5 LINE L1 5636 6153 -21 6 1347 325 295 42 35 chr3 99988610 99988754 -59611029 - RSINE1 SINE B4 -5 160 16 6 1347 258 105 0 0 chr3 99988760 99988798 -59610985 + (CTTG)n Simple_repeat Simple_repeat 2 39 0 6 1347 573 15 0 0 chr3 99988807 99988873 -59610910 + (TTTC)n Simple_repeat Simple_repeat 3 68 0 6 1347 558 246 8 0 chr3 99988888 99989014 -59610769 - B1_Mur1 SINE Alu -21 128 2 6 1347 324 358 11 49 chr3 99989014 99989077 -59610706 - ID SINE ID -143 81 26 6 1347 715 241 36 25 chr3 99989173 99989369 -59610414 - B3A SINE B2 0 198 1 6 1347 394 331 65 0 chr3 99989742 99989866 -59609917 - RSINE1 SINE B4 -31 134 3 6 1347 899 113 60 0 chr3 99989949 99990082 -59609701 + B1_Mur4 SINE Alu 1 141 -9 6 1347 405 0 0 0 chr3 99990101 99990146 -59609637 + (CAAAA)n Simple_repeat Simple_repeat 1 45 0 6 1347 889 272 52 32 chr3 99990866 99991211 -59608572 - L1MA4 LINE L1 -382 5918 5567 6 1347 1342 91 48 0 chr3 99992471 99992657 -59607126 + B2_Mm2 SINE B2 1 195 0 6 1347 523 64 18 73 chr3 99992741 99993030 -59606753 + (TGAG)n Simple_repeat Simple_repeat 1 272 0 6 1347 30 0 0 0 chr3 99993749 99993779 -59606004 + AT_rich Low_complexity Low_complexity 1 30 0 6 1347 760 224 131 0 chr3 99994263 99994477 -59605306 - Lx6 LINE L1 0 7460 7219 6 1347 259 273 45 0 chr3 99996722 99996788 -59602995 + ID4_ SINE ID 4 72 -11 6 1347 435 293 73 57 chr3 99996898 99997090 -59602693 + B3 SINE B2 20 214 -2 6 1347 209 341 63 68 chr3 100000719 100000999 -59598784 + L2c LINE L2 3045 3317 -58 1 1347 217 321 157 0 chr3 100001990 100002176 -59597607 + MIRm SINE MIR 8 230 -32 2 1347 184 200 0 48 chr3 100004600 100004642 -59595141 + MIR SINE MIR 138 177 -85 2 1347 437 270 83 31 chr3 100004925 100005154 -59594629 - L1MA4A LINE L1 -275 6022 5782 3 1347 180 179 0 0 chr3 100005386 100005425 -59594358 + CT-rich Low_complexity Low_complexity 4 42 0 4 1347 270 257 104 17 chr3 100005452 100005567 -59594216 - Lx7 LINE L1 -345 7351 7227 5 1347 186 43 0 0 chr3 100006393 100006416 -59593367 + (A)n Simple_repeat Simple_repeat 1 23 0 6 1348 322 340 90 0 chr3 100011781 100011881 -59587902 - PB1D10 SINE Alu -6 111 3 7 1348 315 0 0 0 chr3 100012670 100012705 -59587078 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 8 1348 212 338 0 24 chr3 100012849 100012931 -59586852 + ID4 SINE ID 2 81 -2 9 1348 231 306 28 0 chr3 100013242 100013314 -59586469 - ID4_ SINE ID -9 74 1 1 1348 1278 70 29 0 chr3 100014335 100014507 -59585276 + B2_Mm1t SINE B2 2 178 -15 1 1348 419 90 288 0 chr3 100014522 100014629 -59585154 + B2_Mm2 SINE B2 48 190 -5 1 1348 236 100 0 24 chr3 100014848 100014889 -59584894 + (TCCC)n Simple_repeat Simple_repeat 2 41 0 1 1348 685 255 46 20 chr3 100015545 100015741 -59584042 - MTE2a LTR MaLR -12 367 167 1 1348 2725 121 101 9 chr3 100015813 100016277 -59583506 - Lx3C LINE L1 0 7058 6459 1 1348 7444 43 0 6 chr3 100016259 100017156 -59582627 + L1Md_F2 LINE L1 4695 5586 -297 1 1348 8312 40 7 3 chr3 100017156 100018146 -59581637 + L1Md_F2 LINE L1 5587 6580 -2 1 1348 26 30 0 0 chr3 100018146 100018179 -59581604 + AT_rich Low_complexity Low_complexity 1 33 0 1 1348 461 309 73 55 chr3 100018179 100018453 -59581330 - MLT1J2 LTR MaLR -97 351 73 1 1348 193 247 82 47 chr3 100018850 100018935 -59580848 + MIRb SINE MIR 64 151 -117 1 1348 3249 47 7 33 chr3 100019006 100019428 -59580355 - RLTR10A LTR ERVK 0 411 1 2 1348 1131 238 185 32 chr3 100020483 100020590 -59579193 - RLTR26 LTR ERVK -5 637 523 2 1348 450 0 0 0 chr3 100020590 100020640 -59579143 + (CTG)n Simple_repeat Simple_repeat 2 51 0 2 1348 1131 238 185 32 chr3 100020640 100021062 -59578721 - RLTR26 LTR ERVK -120 522 27 2 1348 1086 93 0 19 chr3 100021086 100021295 -59578488 + (TTC)n Simple_repeat Simple_repeat 1 205 0 2 1348 1106 90 0 22 chr3 100021301 100021483 -59578300 + (TCC)n Simple_repeat Simple_repeat 3 180 0 2 1348 210 191 0 0 chr3 100021483 100021530 -59578253 + CT-rich Low_complexity Low_complexity 2 48 0 2 1348 1188 75 0 0 chr3 100021869 100022016 -59577767 + B1_Mus1 SINE Alu 2 148 0 2 1348 242 238 147 37 chr3 100022054 100022163 -59577620 - L1MB7 LINE L1 -76 6108 5988 2 1348 253 238 295 58 chr3 100023021 100023177 -59576606 + B3A SINE B2 3 195 -3 2 1348 22 35 0 0 chr3 100023178 100023207 -59576576 + AT_rich Low_complexity Low_complexity 1 29 0 2 1348 2986 153 0 15 chr3 100023414 100023885 -59575898 - Lx4A LINE L1 -1 7057 6594 3 1348 307 282 15 46 chr3 100023896 100024026 -59575757 + RMER5 LTR ERV1 402 527 -7 3 1348 240 149 0 0 chr3 100024035 100024082 -59575701 + (TGG)n Simple_repeat Simple_repeat 1 47 0 3 1348 1854 127 22 0 chr3 100024302 100024578 -59575205 - Lx4A LINE L1 -451 6607 6326 3 1348 484 256 74 0 chr3 100024788 100024909 -59574874 + RSINE1 SINE B4 12 141 -24 3 1348 510 96 0 0 chr3 100025431 100025504 -59574279 + (TA)n Simple_repeat Simple_repeat 1 73 0 3 1348 3348 128 89 0 chr3 100025583 100026144 -59573639 + Lx5 LINE L1 5587 6197 -853 3 1348 268 323 22 51 chr3 100026323 100026460 -59573323 + L2a LINE L2 3292 3424 -2 3 1348 1401 174 5 0 chr3 100026726 100026950 -59572833 + URR1B DNA MER1_type 1 225 0 3 1348 1077 116 0 0 chr3 100026978 100027142 -59572641 + (CA)n Simple_repeat Simple_repeat 2 165 0 3 1348 1095 131 0 5 chr3 100027379 100027994 -59571789 + (CTG)n Simple_repeat Simple_repeat 1 612 0 4 1348 760 211 70 37 chr3 100028145 100028332 -59571451 + B3 SINE B2 14 206 -10 4 1348 413 278 30 45 chr3 100029910 100030042 -59569741 + B1_Mus1 SINE Alu 9 138 -10 4 1348 724 273 50 5 chr3 100030492 100030691 -59569092 + B3 SINE B2 1 208 -8 4 1348 330 132 0 0 chr3 100030703 100030756 -59569027 + (GGGA)n Simple_repeat Simple_repeat 4 56 0 4 1348 192 77 0 0 chr3 100031097 100031123 -59568660 + (TCTG)n Simple_repeat Simple_repeat 1 26 0 4 1348 781 134 0 0 chr3 100031123 100031242 -59568541 - B1_Mur4 SINE Alu -1 149 31 4 1348 275 175 24 24 chr3 100031788 100031870 -59567913 + (TA)n Simple_repeat Simple_repeat 1 82 0 4 1348 255 335 173 0 chr3 100032749 100033003 -59566780 - L2 LINE L2 -1791 1628 1331 4 1348 255 336 18 0 chr3 100033386 100033499 -59566284 - L1M5 LINE L1 -428 5751 5637 4 1348 1275 179 47 19 chr3 100033502 100033759 -59566024 + Lx5 LINE L1 6787 7050 0 5 1348 1040 174 51 5 chr3 100034035 100034232 -59565551 - MTC LTR MaLR 0 421 216 5 1348 4252 164 36 20 chr3 100034232 100035014 -59564769 - Lx5 LINE L1 -17 7033 6240 5 1348 10865 37 5 2 chr3 100035031 100036387 -59563396 - L1Md_F3 LINE L1 -2 6582 5226 5 1348 3497 20 8 0 chr3 100036387 100036780 -59563003 - MTA_Mm LTR MaLR 0 396 1 5 1348 9409 31 4 10 chr3 100036780 100037885 -59561898 - MTA_Mm-int LTR MaLR 0 1098 1 5 1348 3566 18 2 0 chr3 100037885 100038280 -59561503 - MTA_Mm LTR MaLR 0 396 1 5 1348 10865 49 1 6 chr3 100038280 100038942 -59560841 - L1Md_F3 LINE L1 -658 5225 4566 5 1348 333 218 49 49 chr3 100039548 100039630 -59560153 + B4A SINE B4 24 105 -187 5 1348 228 233 0 16 chr3 100039704 100039765 -59560018 + (CA)n Simple_repeat Simple_repeat 1 60 0 5 1348 359 397 37 47 chr3 100039773 100040095 -59559688 - LTR33A_ LTR ERVL -176 355 37 5 1348 378 249 386 0 chr3 100040332 100040514 -59559269 - MTE2b LTR MaLR 0 379 128 5 1348 275 284 53 0 chr3 100041078 100041173 -59558610 - MTE2b LTR MaLR -277 102 3 5 1348 443 268 18 9 chr3 100041441 100041554 -59558229 - PB1D10 SINE Alu -3 114 1 5 1348 1055 135 16 5 chr3 100041587 100041773 -59558010 - RMER6C LTR ERVK 0 690 503 6 1348 21 57 0 0 chr3 100041831 100041866 -59557917 + AT_rich Low_complexity Low_complexity 1 35 0 6 1348 263 315 53 59 chr3 100041924 100042228 -59557555 - L1MC4a LINE L1 -1971 5911 5610 6 1348 632 225 127 23 chr3 100042256 100042429 -59557354 - B3A SINE B2 -5 193 3 6 1348 632 268 71 0 chr3 100043920 100044088 -59555695 - B3A SINE B2 -18 180 1 6 1348 1648 255 96 17 chr3 100044286 100044920 -59554863 + RCHARR1 DNA MER1_type 242 925 -49 6 1348 706 288 127 46 chr3 100044983 100045307 -59554476 - ORR1E LTR MaLR -9 350 1 6 1348 263 289 31 10 chr3 100045416 100045514 -59554269 - L1MB5 LINE L1 -2 6172 6073 6 1348 467 285 101 55 chr3 100045561 100045780 -59554003 + MLT1A0 LTR MaLR 1 229 -136 6 1348 268 301 11 21 chr3 100046897 100046992 -59552791 + MER5A DNA MER1_type 13 106 -83 6 1348 2607 173 0 9 chr3 100047080 100047505 -59552278 + MTC LTR MaLR 1 421 0 7 1348 283 423 62 7 chr3 100047829 100048105 -59551678 - LTR16A LTR ERVL -113 338 48 7 1348 22 0 0 0 chr3 100048206 100048228 -59551555 + AT_rich Low_complexity Low_complexity 1 22 0 7 1348 992 208 32 5 chr3 100048312 100048529 -59551254 + URR1B DNA MER1_type 1 223 -2 7 1348 284 0 28 0 chr3 100048813 100048849 -59550934 + (CA)n Simple_repeat Simple_repeat 2 38 0 7 1348 1142 58 0 0 chr3 100048934 100049071 -59550712 + B1_Mus2 SINE Alu 2 138 -9 7 1348 216 0 0 0 chr3 100049071 100049095 -59550688 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 7 1348 400 268 264 13 chr3 100051926 100052081 -59547702 - B3A SINE B2 -4 194 1 7 1348 402 248 120 0 chr3 100052587 100052704 -59547079 + B1_Mur2 SINE Alu 2 132 -17 7 1348 265 179 188 10 chr3 100052766 100052862 -59546921 + L1MB7 LINE L1 6053 6165 -19 7 1348 338 271 146 20 chr3 100053613 100053863 -59545920 + MER5C DNA MER1_type 35 313 0 8 1348 603 279 24 18 chr3 100053896 100054064 -59545719 + MER58A DNA MER1_type 27 195 -29 8 1348 239 354 10 10 chr3 100054470 100054570 -59545213 - MER5A DNA MER1_type -22 167 68 8 1348 25 0 0 0 chr3 100055708 100055733 -59544050 + AT_rich Low_complexity Low_complexity 1 25 0 8 1348 245 116 0 0 chr3 100055736 100055779 -59544004 - Lx4A LINE L1 0 7058 7016 8 1348 1645 150 0 16 chr3 100055776 100056033 -59543750 - Lx4A LINE L1 -599 6459 6207 8 1348 1115 140 129 5 chr3 100057106 100057307 -59542476 + URR1A DNA MER1_type 1 226 0 8 1348 21 36 0 0 chr3 100058375 100058403 -59541380 + AT_rich Low_complexity Low_complexity 1 28 0 8 1348 370 319 128 32 chr3 100058612 100058800 -59540983 - L3 LINE CR1 -12 4477 4272 8 1348 477 0 0 0 chr3 100059009 100059062 -59540721 + (TG)n Simple_repeat Simple_repeat 2 54 0 8 1348 321 257 166 83 chr3 100059126 100059283 -59540500 - B4 SINE B4 -121 171 2 8 1348 204 40 0 0 chr3 100059420 100059445 -59540338 + (TTGG)n Simple_repeat Simple_repeat 3 27 0 9 1348 23 33 0 0 chr3 100059474 100059504 -59540279 + AT_rich Low_complexity Low_complexity 1 30 0 9 1348 1307 225 83 3 chr3 100059529 100059854 -59539929 - Lx8 LINE L1 -333 7140 6790 9 1348 1279 254 83 73 chr3 100059852 100060397 -59539386 + Lx8 LINE L1 6922 7471 -2 9 1348 319 384 48 35 chr3 100060479 100060706 -59539077 - L1M5 LINE L1 -1124 5022 4793 9 1348 319 239 161 11 chr3 100061083 100061176 -59538607 - B1F2 SINE Alu -1 148 42 9 1348 479 362 34 19 chr3 100061319 100061581 -59538202 - L1M5 LINE L1 -1969 4177 3912 9 1348 283 289 22 0 chr3 100061935 100062070 -59537713 - L1M5 LINE L1 -3109 3037 2900 9 1348 26071 64 45 1 chr3 100062376 100064026 -59535757 + L1Md_F2 LINE L1 311 1961 -3922 9 1348 279 54 0 0 chr3 100064026 100064063 -59535720 + (CAAAA)n Simple_repeat Simple_repeat 4 40 0 9 1348 26071 74 100 3 chr3 100064063 100067299 -59532484 + L1Md_F2 LINE L1 1962 5585 -298 9 1348 8131 47 4 0 chr3 100067299 100068291 -59531492 + L1Md_F2 LINE L1 5587 6582 0 9 1348 252 100 0 0 chr3 100068311 100068351 -59531432 + (CA)n Simple_repeat Simple_repeat 1 40 0 9 1348 231 36 0 0 chr3 100068391 100068419 -59531364 + (GA)n Simple_repeat Simple_repeat 1 28 0 9 1348 792 0 0 0 chr3 100068713 100068801 -59530982 + (ATGTG)n Simple_repeat Simple_repeat 1 88 0 1 1348 426 186 0 0 chr3 100069501 100069587 -59530196 + (TA)n Simple_repeat Simple_repeat 2 87 0 1 1348 1032 256 84 20 chr3 100070044 100070438 -59529345 - L1MB2 LINE L1 -25 6146 5728 1 1348 1271 79 189 0 chr3 100072276 100072466 -59527317 - URR1A DNA MER1_type 0 226 1 1 1348 230 378 14 0 chr3 100072532 100072606 -59527177 + ID4 SINE ID 3 77 -6 1 1348 306 0 0 0 chr3 100072642 100072676 -59527107 + (CA)n Simple_repeat Simple_repeat 1 34 0 1 1348 243 0 0 0 chr3 100072676 100072702 -59527081 + (GA)n Simple_repeat Simple_repeat 2 28 0 1 1348 238 293 53 73 chr3 100073682 100073833 -59525950 + MLT1L LTR MaLR 455 602 -8 1 1348 332 339 56 71 chr3 100073921 100074188 -59525595 + L4 LINE RTE 712 974 -1055 1 1348 279 297 21 21 chr3 100074343 100074436 -59525347 - MER5A DNA MER1_type -83 106 14 1 1348 262 330 115 9 chr3 100074830 100074943 -59524840 + MIR SINE MIR 63 187 -75 1 1348 373 342 60 5 chr3 100075074 100075259 -59524524 - MIR SINE MIR -67 195 1 1 1348 231 146 0 0 chr3 100075431 100075472 -59524311 + (TTA)n Simple_repeat Simple_repeat 2 42 0 1 1348 313 301 353 31 chr3 100075472 100075699 -59524084 - ORR1E LTR MaLR -52 327 28 1 1348 387 0 0 0 chr3 100077181 100077224 -59522559 + (TG)n Simple_repeat Simple_repeat 1 43 0 1 1348 671 202 65 0 chr3 100077252 100077376 -59522407 - B3A SINE B2 -66 132 1 1 1348 288 311 0 0 chr3 100077397 100077487 -59522296 + CT-rich Low_complexity Low_complexity 1 90 0 1 1348 476 32 16 0 chr3 100077487 100077549 -59522234 + (TG)n Simple_repeat Simple_repeat 2 64 0 1 1348 633 175 19 0 chr3 100077648 100077751 -59522032 + B3 SINE B2 99 203 -13 1 1348 1721 93 11 19 chr3 100078029 100078292 -59521491 - L1Md_F2 LINE L1 -12 6570 6310 1 1348 5515 73 3 4 chr3 100080634 100081359 -59518424 - L1_Mus3 LINE L1 0 6638 5915 1 1348 1017 230 5 14 chr3 100081393 100081609 -59518174 - B3 SINE B2 -2 214 1 1 1348 867 243 29 19 chr3 100081925 100082135 -59517648 - ID_B1 SINE B4 0 224 13 1 1348 967 258 58 75 chr3 100082137 100082498 -59517285 + MTE2a LTR MaLR 3 357 -22 1 1348 690 262 20 4 chr3 100082717 100082962 -59516821 + L1M4 LINE L1 4905 5153 -993 1 1348 3874 143 75 7 chr3 100083081 100083752 -59516031 + RLTR33 LTR ERVK 1 672 -6 1 1348 343 233 9 28 chr3 100083773 100083879 -59515904 + L1M4 LINE L1 5172 5275 -871 1 1348 5227 116 41 45 chr3 100084003 100084912 -59514871 - RMER17A2 LTR ERVK 0 906 2 1 1348 1468 196 49 85 chr3 100084916 100085331 -59514452 - MT2B LTR ERVL -64 537 1 1 1348 252 347 61 10 chr3 100085333 100085432 -59514351 - L2 LINE L2 -345 3074 2971 1 1348 471 249 93 68 chr3 100085507 100085787 -59513996 + L1M2 LINE L1 3287 3573 -2570 1 1348 1078 221 12 111 chr3 100085811 100086217 -59513566 + MT2A LTR ERVL 1 529 -72 1 1348 191 32 65 0 chr3 100086222 100086253 -59513530 + (CAAAA)n Simple_repeat Simple_repeat 2 34 0 1 1348 507 170 196 9 chr3 100086257 100086364 -59513419 - MT2A LTR ERVL -245 288 162 1 1348 639 50 30 0 chr3 100086364 100086464 -59513319 + (TAGA)n Simple_repeat Simple_repeat 2 104 0 1 1348 291 116 0 0 chr3 100086470 100086513 -59513270 + Ricksha_c DNA MuDR 868 910 -1138 1 1348 1228 259 96 0 chr3 100086595 100086939 -59512844 + MTEa LTR MaLR 1 377 -2 1 1348 27 0 0 0 chr3 100086968 100086995 -59512788 + AT_rich Low_complexity Low_complexity 1 27 0 1 1348 1994 231 131 27 chr3 100087011 100087715 -59512068 + L1M2 LINE L1 3684 4460 -1683 1 1348 339 269 21 50 chr3 100087734 100087843 -59511940 + B1F SINE Alu 5 107 -10 1 1348 813 163 51 26 chr3 100087893 100088088 -59511695 + L1M2 LINE L1 4467 4666 -1477 1 1348 275 217 32 11 chr3 100088096 100088189 -59511594 + L1M2 LINE L1 4926 5020 -1120 1 1348 1500 306 96 61 chr3 100088217 100088937 -59510846 - MTE-int LTR MaLR -489 1091 347 1 1348 404 355 27 0 chr3 100088966 100089076 -59510707 - B1F1 SINE Alu -36 113 1 1 1348 609 280 115 82 chr3 100089076 100089379 -59510404 - MTE-int LTR MaLR -1229 351 39 1 1348 958 261 122 24 chr3 100089379 100090148 -59509635 - RMER1A Other Other -487 855 72 1 1348 947 206 78 100 chr3 100091013 100091294 -59508489 + MTEb LTR MaLR 87 361 -18 1 1348 3585 254 159 16 chr3 100091313 100092468 -59507315 + MTEb-int LTR MaLR 6 1364 -216 1 1348 504 0 0 0 chr3 100092613 100092669 -59507114 + (TG)n Simple_repeat Simple_repeat 2 57 0 1 1348 235 275 72 36 chr3 100092676 100092759 -59507024 - RMER15 LTR ERVL -118 457 372 1 1348 238 321 36 0 chr3 100092759 100092843 -59506940 - Lx8 LINE L1 -235 7238 7152 1 1348 1123 272 92 26 chr3 100092893 100093282 -59506501 - Lx8 LINE L1 -426 7047 6633 1 1348 906 116 0 0 chr3 100093600 100093738 -59506045 + (GA)n Simple_repeat Simple_repeat 1 138 0 1 1348 387 0 0 0 chr3 100093778 100093821 -59505962 + (TTTA)n Simple_repeat Simple_repeat 3 45 0 1 1348 474 284 22 7 chr3 100093827 100093962 -59505821 - ID_B1 SINE B4 0 224 88 1 1348 280 253 9 24 chr3 100094164 100094316 -59505467 + L1MEc LINE L1 808 1044 -5371 1 1348 6527 33 0 0 chr3 100094866 100095626 -59504157 - L1Md_F2 LINE L1 -14 6568 5809 1 1348 1796 65 0 4 chr3 100095626 100095872 -59503911 - L1_Mm LINE L1 -582 5301 5057 1 1348 3281 232 66 12 chr3 100096337 100097536 -59502247 + Lx9 LINE L1 891 2147 -3700 1 1348 1927 57 0 8 chr3 100097536 100097784 -59501999 - L1_Mus2 LINE L1 -2 6564 6319 1 1348 3281 234 68 18 chr3 100097784 100098012 -59501771 + Lx9 LINE L1 2148 2392 -3455 1 1348 2717 73 25 87 chr3 100098012 100098461 -59501322 - BGLII LTR ERVK 0 421 1 1 1348 2723 210 73 45 chr3 100098468 100099354 -59500429 - RMER3D-int LTR ERVK -7 2835 1925 1 1348 2397 179 85 74 chr3 100099373 100100032 -59499751 - RMER3D-int LTR ERVK -1163 1679 1014 1 1348 277 109 94 0 chr3 100100077 100100141 -59499642 + CT-rich Low_complexity Low_complexity 1 70 0 1 1348 487 143 16 0 chr3 100100141 100100254 -59499529 - RMER3D-int LTR ERVK -2259 583 489 1 1348 3014 70 19 0 chr3 100100661 100100870 -59498913 - BGLII LTR ERVK 0 421 210 1 1348 366 23 0 0 chr3 100100870 100100913 -59498870 + (TC)n Simple_repeat Simple_repeat 1 43 0 1 1348 3014 70 19 0 chr3 100100913 100101116 -59498667 - BGLII LTR ERVK -212 209 2 1 1348 2199 231 78 47 chr3 100101116 100102088 -59497695 + Lx9 LINE L1 2387 3303 -2544 1 1348 453 157 235 0 chr3 100102095 100102197 -59497586 - MTD LTR MaLR -293 126 1 1 1348 894 239 36 25 chr3 100102197 100102476 -59497307 + Lx9 LINE L1 5689 5970 -1674 1 1348 12711 89 30 5 chr3 100102595 100105484 -59494299 + L1VL2 LINE L1 29 2988 -627 1 1348 404 239 11 0 chr3 100105617 100105709 -59494074 - Lx9 LINE L1 -921 6723 6631 1 1348 1949 242 67 21 chr3 100105771 100106295 -59493488 + Lx9 LINE L1 6305 6852 -792 1 1348 1591 182 48 0 chr3 100106312 100106647 -59493136 + L1_Mur3 LINE L1 4850 5200 -680 1 1348 1312 165 172 4 chr3 100106666 100106922 -59492861 + MTC LTR MaLR 123 421 0 1 1348 3113 203 72 136 chr3 100106922 100107434 -59492349 + MTC-int LTR MaLR 1 506 -752 1 1348 249 57 0 0 chr3 100107434 100107469 -59492314 + (CAAAA)n Simple_repeat Simple_repeat 4 38 0 1 1348 3113 203 72 136 chr3 100107469 100108296 -59491487 + MTC-int LTR MaLR 507 1255 -3 1 1348 2286 189 23 2 chr3 100108299 100108698 -59491085 + MTC LTR MaLR 1 407 -14 1 1348 423 0 0 0 chr3 100108716 100108763 -59491020 + (TG)n Simple_repeat Simple_repeat 1 47 0 1 1348 306 50 0 0 chr3 100108763 100108802 -59490981 + (GA)n Simple_repeat Simple_repeat 1 40 0 1 1348 241 313 0 20 chr3 100108807 100108908 -59490875 + Lx7 LINE L1 7578 7676 -20 1 1348 36 23 0 0 chr3 100109015 100109058 -59490725 + AT_rich Low_complexity Low_complexity 1 43 0 1 1348 318 286 71 0 chr3 100109090 100109188 -59490595 + L1MD LINE L1 3522 3626 -2520 1 1348 748 7 105 0 chr3 100109305 100109726 -59490057 + (TCTCC)n Simple_repeat Simple_repeat 1 465 0 1 1348 2494 194 53 4 chr3 100109753 100110240 -59489543 - Lx5 LINE L1 -36 7014 6504 1 1348 2336 155 49 0 chr3 100110260 100110648 -59489135 - RMER19B LTR ERVK 0 902 496 1 1348 5264 78 7 5 chr3 100110666 100111402 -59488381 - Lx3_Mus LINE L1 -46 6963 6227 1 1348 10714 141 33 24 chr3 100111406 100113295 -59486488 - L1_Mur2 LINE L1 -612 5265 3361 1 1348 1353 42 0 0 chr3 100113295 100113463 -59486320 + LTRIS3 LTR ERV1 345 512 0 1 1348 1048 158 73 14 chr3 100113616 100113834 -59485949 + MuRRS4-int LTR ERV1 63 293 -3006 1 1348 1015 129 66 17 chr3 100114179 100114360 -59485423 + RMER16-int LTR ERVK 142 331 -5075 1 1348 4424 149 50 22 chr3 100114341 100115080 -59484703 + RMER16-int LTR ERVK 685 1444 -3962 1 1348 3582 181 86 30 chr3 100115071 100116353 -59483430 + MuRRS4-int LTR ERV1 760 1847 -3216 1 1348 1883 63 126 0 chr3 100116333 100116603 -59483180 + MuRRS4-int LTR ERV1 1619 1922 -1377 1 1348 311 248 19 38 chr3 100116596 100116701 -59483082 + MURVY-int LTR ERV1 5097 5199 -2253 1 1348 987 228 26 0 chr3 100116902 100117130 -59482653 + MuRRS4-int LTR ERV1 4788 5021 -42 1 1348 3144 88 55 7 chr3 100117131 100117546 -59482237 + LTRIS3 LTR ERV1 1 430 -82 1 1348 441 0 0 0 chr3 100117546 100117595 -59482188 + (GAAAA)n Simple_repeat Simple_repeat 2 50 0 1 1348 3144 88 55 7 chr3 100117595 100117635 -59482148 + LTRIS3 LTR ERV1 431 478 -34 1 1348 5168 56 8 0 chr3 100117635 100118273 -59481510 + L1_Mus1 LINE L1 5849 6491 -76 1 1348 4749 67 0 0 chr3 100118279 100118874 -59480909 + L1_Mm LINE L1 4332 4926 -957 1 1348 9836 149 13 80 chr3 100118873 100119972 -59479811 - L1_Mur2 LINE L1 -2731 3146 2050 1 1348 359 41 0 20 chr3 100119972 100120022 -59479761 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 1348 9836 149 13 80 chr3 100120022 100120323 -59479460 - L1_Mur2 LINE L1 -3828 2049 1880 1 1348 867 32 0 39 chr3 100120323 100120453 -59479330 + (TTAGGG)n Simple_repeat Simple_repeat 6 130 0 1 1348 9836 154 19 57 chr3 100120453 100121237 -59478546 - L1_Mur2 LINE L1 -3998 1879 1100 1 1348 231 203 49 33 chr3 100121698 100121759 -59478024 + L1MC LINE L1 3799 3860 -2286 1 1348 3301 181 30 3 chr3 100121883 100122546 -59477237 + MYSERV16_I-int LTR ERVK 1046 1726 -600 1 1348 351 0 0 0 chr3 100122562 100122601 -59477182 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 1348 402 306 34 25 chr3 100122749 100122987 -59476796 + L1MD LINE L1 4096 4335 -1811 1 1348 5450 83 41 7 chr3 100123059 100123786 -59475997 - Lx3_Mus LINE L1 0 7009 6258 1 1348 5758 90 26 31 chr3 100123786 100124992 -59474791 + Lx3_Mus LINE L1 5101 6281 -728 1 1348 949 270 98 59 chr3 100124992 100125344 -59474439 + MTE2a LTR MaLR 46 406 -13 1 1348 200 275 9 38 chr3 100125412 100125518 -59474265 + (TATATG)n Simple_repeat Simple_repeat 5 107 0 1 1348 1133 65 0 21 chr3 100125670 100125811 -59473972 + B1_Mus2 SINE Alu 2 139 -8 1 1348 219 69 0 0 chr3 100125826 100125855 -59473928 + (GAAAA)n Simple_repeat Simple_repeat 2 30 0 1 1348 193 309 92 76 chr3 100126067 100126186 -59473597 - L2a LINE L2 -7 3419 3299 1 1348 180 0 0 0 chr3 100127169 100127189 -59472594 + (TG)n Simple_repeat Simple_repeat 2 21 0 1 1348 404 176 13 26 chr3 100127242 100127318 -59472465 - B3A SINE B2 -123 75 1 1 1348 421 235 181 39 chr3 100127442 100127597 -59472186 - B3A SINE B2 -16 179 3 1 1348 279 79 0 0 chr3 100127990 100128028 -59471755 + (TAAA)n Simple_repeat Simple_repeat 4 41 0 1 1348 195 100 0 0 chr3 100128127 100128157 -59471626 + (CAAAAA)n Simple_repeat Simple_repeat 3 32 0 1 1348 343 290 130 0 chr3 100128258 100128358 -59471425 + B1F SINE Alu 1 113 -36 1 1348 311 246 28 28 chr3 100128355 100128426 -59471357 + ID4_ SINE ID 5 75 -8 2 1348 225 171 24 0 chr3 100128635 100128676 -59471107 + C-rich Low_complexity Low_complexity 1 42 0 2 1348 33420 72 13 14 chr3 100128822 100133192 -59466591 + L1Md_F2 LINE L1 586 5002 -881 2 1348 1283 55 0 0 chr3 100133192 100133337 -59466446 + B1_Mus2 SINE Alu 1 145 -2 2 1348 33420 68 1 17 chr3 100133337 100133979 -59465804 + L1Md_F2 LINE L1 5003 5586 -297 2 1348 8427 47 15 2 chr3 100133979 100134956 -59464827 + L1Md_F2 LINE L1 5587 6576 -6 2 1348 390 211 0 0 chr3 100135050 100135154 -59464629 + CT-rich Low_complexity Low_complexity 1 104 0 2 1348 714 342 56 52 chr3 100135183 100135451 -59464332 - B4A SINE B4 -22 270 2 2 1348 398 299 160 22 chr3 100137548 100137729 -59462054 + RMER15 LTR ERVL 299 504 -71 2 1348 213 39 0 0 chr3 100138049 100138075 -59461708 + (GAAAA)n Simple_repeat Simple_repeat 4 29 0 2 1348 3526 174 41 41 chr3 100138095 100138785 -59460998 + RMER6C LTR ERVK 1 690 0 2 1348 1521 71 0 5 chr3 100138787 100138971 -59460812 + B2_Mm2 SINE B2 4 186 -9 2 1349 202 273 0 0 chr3 100139700 100139744 -59460039 + (TG)n Simple_repeat Simple_repeat 1 44 0 2 1349 467 301 69 120 chr3 100139880 100140171 -59459612 - B4A SINE B4 -16 276 1 2 1349 463 258 147 32 chr3 100140171 100140327 -59459456 - B4A SINE B4 -62 230 57 2 1349 545 278 38 9 chr3 100140344 100140601 -59459182 - L1MD3 LINE L1 -2133 5862 5588 2 1349 474 369 7 0 chr3 100140601 100140742 -59459041 + ID_B1 SINE B4 73 214 -10 2 1349 470 287 32 37 chr3 100140742 100140930 -59458853 - L1MD3 LINE L1 -1519 4627 4441 2 1349 2102 147 0 0 chr3 100140936 100141255 -59458528 - ORR1A3 LTR MaLR 0 326 8 2 1349 495 324 99 32 chr3 100141332 100141926 -59457857 - L1MD3 LINE L1 -1816 4330 3697 2 1349 1328 253 68 3 chr3 100141964 100142301 -59457482 - ORR1E LTR MaLR 0 359 1 2 1349 975 237 45 0 chr3 100142324 100142522 -59457261 + B3 SINE B2 2 208 -8 2 1349 478 272 84 9 chr3 100142541 100142756 -59457027 - L1MD3 LINE L1 -2494 3652 3422 2 1349 339 273 277 6 chr3 100142765 100142931 -59456852 - MTE2b LTR MaLR -4 375 165 2 1349 28 48 0 0 chr3 100142937 100142979 -59456804 + AT_rich Low_complexity Low_complexity 1 42 0 2 1349 1739 248 37 41 chr3 100143004 100143441 -59456342 - Lx6 LINE L1 -60 7400 6966 2 1349 358 331 60 12 chr3 100143443 100143611 -59456172 - MTE2b LTR MaLR -200 179 4 2 1349 361 275 87 33 chr3 100143623 100143807 -59455976 - L1MD3 LINE L1 -2730 3416 3223 2 1349 947 257 28 9 chr3 100143993 100144205 -59455578 - B3 SINE B2 0 216 1 2 1349 578 225 237 0 chr3 100144562 100144735 -59455048 - B3 SINE B2 0 216 3 2 1349 372 237 54 61 chr3 100144761 100144909 -59454874 - Lx5 LINE L1 -1 7049 6903 2 1349 523 346 98 27 chr3 100145211 100145508 -59454275 - Arthur1 DNA Tip100 -3626 321 4 2 1349 560 306 89 71 chr3 100146407 100146672 -59453111 + L1M2 LINE L1 1618 1859 -4920 2 1349 1562 49 0 21 chr3 100146672 100146861 -59452922 + B2_Mm2 SINE B2 2 186 -9 2 1349 628 307 93 55 chr3 100146861 100147428 -59452355 + L1M2 LINE L1 1860 2451 -4398 2 1349 435 233 55 122 chr3 100147565 100147581 -59452202 + B4 SINE B4 79 139 -153 2 1349 861 136 14 0 chr3 100147581 100147721 -59452062 + B1_Mus1 SINE Alu 6 147 -1 2 1349 435 233 55 122 chr3 100147721 100147746 -59452037 + B4 SINE B4 140 248 -44 2 1349 363 167 0 0 chr3 100147746 100147812 -59451971 + GA-rich Low_complexity Low_complexity 1 66 0 2 1349 292 281 99 14 chr3 100148173 100148314 -59451469 + MLT-int LTR MaLR 46 198 -1537 2 1349 346 358 90 21 chr3 100148311 100148545 -59451238 + MTE-int LTR MaLR 224 473 -1107 2 1349 545 298 88 57 chr3 100148983 100149314 -59450469 + MTE-int LTR MaLR 1201 1541 -39 2 1349 348 283 62 67 chr3 100149490 100149668 -59450115 - RMER20B LTR ERVK -2 514 338 2 1349 607 244 18 37 chr3 100149782 100149948 -59449835 - RMER20B LTR ERVK -355 161 1 2 1349 832 273 30 5 chr3 100150111 100150310 -59449473 - ID_B1 SINE B4 -17 207 4 2 1349 1701 258 71 18 chr3 100150369 100150839 -59448944 + Lx6 LINE L1 6552 7399 -61 2 1349 465 322 94 61 chr3 100151007 100151367 -59448416 + L1M4c LINE L1 2025 2396 -3988 2 1349 765 243 42 0 chr3 100151367 100151556 -59448227 + B3A SINE B2 1 197 -1 2 1349 1171 329 44 66 chr3 100151564 100152591 -59447192 + L1_Mur3 LINE L1 1607 2629 -3511 2 1349 342 303 9 92 chr3 100152592 100152701 -59447082 + ID_B1 SINE B4 84 183 -41 2 1349 309 283 0 145 chr3 100152701 100152716 -59447067 + PB1D10 SINE Alu 3 108 -9 2 1349 275 208 97 0 chr3 100152720 100152792 -59446991 + L1_Mur3 LINE L1 2578 2690 -3453 2 1349 697 285 51 12 chr3 100152807 100153141 -59446642 + L1_Mur3 LINE L1 3024 3370 -2510 2 1349 1288 186 17 29 chr3 100153160 100153398 -59446385 + MTC LTR MaLR 1 235 -186 2 1349 831 58 0 0 chr3 100153401 100153505 -59446278 + B2_Mm2 SINE B2 1 104 -91 2 1349 1267 135 5 5 chr3 100153507 100153701 -59446082 + MTC LTR MaLR 224 417 -4 2 1349 258 241 36 0 chr3 100153702 100153785 -59445998 + L1_Mur3 LINE L1 3396 3481 -2399 2 1349 750 218 30 0 chr3 100153794 100153927 -59445856 + B3A SINE B2 3 139 -59 2 1349 486 283 72 68 chr3 100153932 100154182 -59445601 + L1MA4 LINE L1 5633 5883 -417 2 1349 21 36 0 0 chr3 100154199 100154227 -59445556 + AT_rich Low_complexity Low_complexity 1 28 0 2 1349 261 128 76 13 chr3 100154275 100154354 -59445429 + (TA)n Simple_repeat Simple_repeat 2 85 0 2 1349 1507 177 117 0 chr3 100154564 100155043 -59444740 + RCHARR1 DNA MER1_type 357 891 -83 2 1349 411 38 0 0 chr3 100155044 100155097 -59444686 + (TA)n Simple_repeat Simple_repeat 2 54 0 2 1349 3316 283 37 13 chr3 100155133 100156049 -59443734 + Lx8 LINE L1 6380 7317 -156 2 1349 598 312 93 77 chr3 100156318 100156880 -59442903 - MLT2B3 LTR ERVL -12 705 124 2 1349 767 299 133 43 chr3 100156886 100157397 -59442386 + L1MA9 LINE L1 2320 2876 -3264 2 1349 3633 63 0 35 chr3 100157453 100157915 -59441868 + L1Md_F2 LINE L1 6123 6568 -14 2 1349 27 0 0 0 chr3 100157923 100157950 -59441833 + AT_rich Low_complexity Low_complexity 1 27 0 2 1349 1366 261 119 56 chr3 100157950 100159038 -59440745 + L1MA9 LINE L1 4781 5935 -377 2 1349 560 257 15 0 chr3 100159038 100159174 -59440609 + L1M2 LINE L1 5606 5743 -569 2 1349 289 326 35 0 chr3 100159430 100159516 -59440267 - B1F1 SINE Alu -60 89 1 2 1349 202 255 0 68 chr3 100159778 100159837 -59439946 + L2b LINE L2 3316 3370 -5 2 1349 1407 264 40 19 chr3 100159912 100160282 -59439501 - MTE2a LTR MaLR -1 378 1 2 1349 234 225 60 48 chr3 100160361 100160445 -59439338 - MTE2a LTR MaLR -13 366 282 2 1349 1039 292 34 34 chr3 100161444 100161735 -59438048 + B4A SINE B4 1 291 -1 2 1349 348 127 0 0 chr3 100161751 100161806 -59437977 + HAL1-3A_ME LINE L1 1976 2030 -828 2 1349 1499 152 4 22 chr3 100164019 100164247 -59435536 + URR1B DNA MER1_type 2 225 0 2 1349 217 286 0 49 chr3 100165210 100165291 -59434492 + (CATATA)n Simple_repeat Simple_repeat 1 77 0 2 1349 417 90 0 0 chr3 100165406 100165473 -59434310 + (CA)n Simple_repeat Simple_repeat 1 67 0 2 1349 266 349 104 36 chr3 100165517 100165737 -59434046 + L2c LINE L2 3077 3311 -76 2 1349 223 223 198 21 chr3 100166495 100166591 -59433192 - MIRb SINE MIR -9 253 141 2 1349 198 238 78 16 chr3 100166666 100166730 -59433053 - MIRb SINE MIR -163 105 38 2 1349 407 318 31 8 chr3 100169277 100169407 -59430376 + B1F2 SINE Alu 1 133 -16 2 1349 226 239 60 0 chr3 100169417 100169484 -59430299 + GA-rich Low_complexity Low_complexity 2 72 0 2 1349 509 252 52 122 chr3 100171038 100171268 -59428515 - MTE2b LTR MaLR -26 353 140 2 1349 529 296 161 5 chr3 100171844 100172068 -59427715 - MT2A LTR ERVL -11 522 264 2 1349 32163 97 25 6 chr3 100172071 100178111 -59421672 + L1_Mus1 LINE L1 407 6566 -1 2 1349 264 185 12 36 chr3 100178151 100178235 -59421548 - MLT2B5 LTR ERVL -5 550 469 2 1349 369 34 0 48 chr3 100178235 100178297 -59421486 + (GA)n Simple_repeat Simple_repeat 1 59 0 2 1349 1256 201 19 35 chr3 100178308 100178731 -59421052 - MT2A LTR ERVL -68 465 3 2 1349 335 265 97 52 chr3 100178710 100178865 -59420918 + RSINE1 SINE B4 4 165 0 2 1349 306 0 0 0 chr3 100179032 100179066 -59420717 + (TTAG)n Simple_repeat Simple_repeat 3 36 0 2 1349 462 61 0 0 chr3 100179213 100179279 -59420504 + (GA)n Simple_repeat Simple_repeat 2 67 0 2 1349 351 113 0 0 chr3 100179934 100179987 -59419796 + (CA)n Simple_repeat Simple_repeat 2 54 0 2 1349 287 321 59 59 chr3 100180629 100180798 -59418985 + MTEb LTR MaLR 1 169 -210 2 1349 378 309 76 20 chr3 100180918 100181116 -59418667 - RMER15 LTR ERVL -4 571 363 2 1349 820 179 61 41 chr3 100181142 100181451 -59418332 - ORR1C2 LTR MaLR 0 384 6 2 1349 580 305 86 53 chr3 100181647 100181764 -59418019 + MER47B DNA MER2_type 11 115 -303 2 1349 516 274 0 0 chr3 100181764 100181881 -59417902 - PB1D10 SINE Alu 0 117 1 2 1349 580 305 86 53 chr3 100181881 100182158 -59417625 + MER47B DNA MER2_type 116 418 0 2 1349 536 309 84 30 chr3 100182159 100182553 -59417230 + L1M5 LINE L1 3770 4184 -1962 2 1349 1739 32 0 0 chr3 100182585 100182782 -59417001 + L1_Mm LINE L1 5391 5615 -729 2 1349 7895 42 39 0 chr3 100182782 100183736 -59416047 + L1Md_F2 LINE L1 5587 6577 -5 2 1349 923 252 18 25 chr3 100183736 100183796 -59415987 + L1_Mm LINE L1 5616 5675 -499 2 1349 185 0 40 0 chr3 100183840 100183865 -59415918 + (TA)n Simple_repeat Simple_repeat 2 27 0 2 1349 2280 278 92 42 chr3 100184076 100184653 -59415130 + Tigger1 DNA MER2_type 4 622 -1796 2 1349 1850 228 37 7 chr3 100184653 100185060 -59414723 + MTD LTR MaLR 1 419 0 2 1349 2402 263 96 39 chr3 100185060 100185541 -59414242 + Tigger1 DNA MER2_type 623 1195 -1223 2 1349 270 0 0 0 chr3 100185541 100185571 -59414212 + (TC)n Simple_repeat Simple_repeat 2 31 0 2 1349 351 0 0 0 chr3 100185571 100185609 -59414174 + (TG)n Simple_repeat Simple_repeat 2 40 0 2 1349 2402 236 103 33 chr3 100185609 100186190 -59413593 + Tigger1 DNA MER2_type 1196 1835 -583 2 1349 251 337 82 29 chr3 100186468 100186639 -59413144 - MER5A DNA MER1_type -5 184 5 2 1349 846 282 10 0 chr3 100186728 100186937 -59412846 - B3 SINE B2 -2 214 4 2 1349 346 327 131 4 chr3 100186978 100187203 -59412580 + Tigger1 DNA MER2_type 1836 2089 -329 2 1349 320 0 25 0 chr3 100187211 100187251 -59412532 + (CAAAA)n Simple_repeat Simple_repeat 4 44 0 2 1349 488 282 69 22 chr3 100187254 100187486 -59412297 + Tigger1 DNA MER2_type 2176 2418 0 2 1349 357 297 60 6 chr3 100187488 100187654 -59412129 + L1M4 LINE L1 4541 4715 -1431 2 1349 9723 23 0 1 chr3 100187989 100189103 -59410680 + L1Md_T LINE L1 4474 5586 -297 2 1349 8583 32 0 4 chr3 100189103 100190103 -59409680 + L1Md_T LINE L1 5587 6582 0 2 1349 703 228 0 20 chr3 100190446 100190598 -59409185 + B3A SINE B2 3 151 -47 2 1349 458 17 17 0 chr3 100190600 100190659 -59409124 + (CA)n Simple_repeat Simple_repeat 1 60 0 2 1349 603 0 0 0 chr3 100190662 100190729 -59409054 + (TAGA)n Simple_repeat Simple_repeat 3 69 0 2 1349 25 0 0 0 chr3 100191704 100191729 -59408054 + AT_rich Low_complexity Low_complexity 1 25 0 2 1349 2965 110 11 7 chr3 100192301 100192741 -59407042 + Lx LINE L1 6210 6651 -3 2 1349 530 149 17 50 chr3 100193102 100193222 -59406561 - ORR1A3 LTR MaLR -94 232 117 3 1349 436 244 44 7 chr3 100193282 100193418 -59406365 + MTC LTR MaLR 281 421 0 3 1349 687 203 12 16 chr3 100193773 100194033 -59405750 + CT-rich Low_complexity Low_complexity 1 258 0 3 1349 225 286 22 56 chr3 100194387 100194476 -59405307 - LTR33 LTR ERVL -366 149 64 3 1349 4504 6 6 0 chr3 100194891 100195381 -59404402 + MT2_Mm LTR ERVL 1 493 0 3 1349 5113 166 15 162 chr3 100195630 100196876 -59402907 - RMER1B Other Other 0 1066 4 3 1349 542 293 51 39 chr3 100196915 100197071 -59402712 - B3A SINE B2 -32 166 9 3 1349 300 222 0 10 chr3 100197072 100197172 -59402611 + L1M3f LINE L1 971 1069 -4259 3 1349 474 175 29 0 chr3 100198664 100198767 -59401016 + MER53 DNA hAT 5 110 -83 3 1349 621 293 87 64 chr3 100199686 100200076 -59399707 - MER74A LTR ERVL -147 411 13 3 1349 334 284 27 27 chr3 100200239 100200351 -59399432 - MER81 DNA AcHobo -1 113 2 3 1349 958 255 10 48 chr3 100200973 100201265 -59398518 + B4A SINE B4 8 288 -4 3 1349 402 252 96 35 chr3 100202689 100202804 -59396979 + RSINE1 SINE B4 40 161 -4 3 1349 926 278 49 25 chr3 100203018 100203302 -59396481 + B4 SINE B4 2 292 0 3 1349 261 0 0 0 chr3 100203787 100203816 -59395967 + (TC)n Simple_repeat Simple_repeat 1 29 0 3 1349 24 32 0 0 chr3 100204146 100204177 -59395606 + AT_rich Low_complexity Low_complexity 1 31 0 3 1349 385 207 0 68 chr3 100204380 100204468 -59395315 - RSINE1 SINE B4 -68 97 16 3 1349 1038 150 114 45 chr3 100204520 100204722 -59395061 - B3 SINE B2 0 216 1 3 1349 508 224 0 9 chr3 100205511 100205619 -59394164 + B1_Mur4 SINE Alu 44 150 0 3 1349 874 259 78 8 chr3 100205644 100205901 -59393882 + B4A SINE B4 5 279 -13 3 1349 257 231 18 46 chr3 100205914 100206023 -59393760 + (CA)n Simple_repeat Simple_repeat 1 106 0 3 1349 731 153 8 0 chr3 100206188 100206312 -59393471 + B1F2 SINE Alu 17 141 -8 3 1349 252 0 0 0 chr3 100206330 100206358 -59393425 + (CA)n Simple_repeat Simple_repeat 1 28 0 3 1349 360 0 0 0 chr3 100206358 100206397 -59393386 + (GA)n Simple_repeat Simple_repeat 2 41 0 3 1349 1044 146 0 0 chr3 100208464 100208642 -59391141 + (TA)n Simple_repeat Simple_repeat 1 178 0 3 1349 212 246 16 0 chr3 100208972 100209033 -59390750 - L2a LINE L2 -31 3395 3334 3 1349 2645 40 71 0 chr3 100209608 100209931 -59389852 + ORR1A1 LTR MaLR 1 346 0 3 1349 225 0 0 0 chr3 100210308 100210333 -59389450 + (TGG)n Simple_repeat Simple_repeat 3 27 0 3 1349 246 311 0 0 chr3 100210618 100210692 -59389091 + (TG)n Simple_repeat Simple_repeat 1 74 0 3 1349 231 368 0 0 chr3 100210692 100210768 -59389015 - ID4_ SINE ID -6 77 2 3 1349 563 177 131 68 chr3 100210892 100211068 -59388715 - RLTR11A2 LTR ERVK 0 527 341 3 1349 752 271 44 47 chr3 100211083 100211358 -59388425 - RLTR11A2 LTR ERVK -235 292 19 3 1349 319 178 0 60 chr3 100211429 100211521 -59388262 - B1_Mur4 SINE Alu -1 119 41 3 1349 230 203 16 33 chr3 100211554 100211615 -59388168 - B1_Mus1 SINE Alu -88 60 1 3 1349 207 0 0 0 chr3 100211992 100212015 -59387768 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 3 1349 1307 7 0 0 chr3 100212015 100212159 -59387624 - B1_Mm SINE Alu -3 144 1 3 1349 4183 210 39 45 chr3 100212194 100213244 -59386539 + RMER1A Other Other 95 1027 -3 3 1349 3919 145 107 63 chr3 100213532 100214385 -59385398 - RMER19B LTR ERVK -12 890 1 3 1349 23 0 0 0 chr3 100214741 100214764 -59385019 + AT_rich Low_complexity Low_complexity 1 23 0 3 1349 1160 291 60 19 chr3 100215831 100216251 -59383532 + MER97c DNA MER1_type? 1 437 -653 3 1349 269 57 0 0 chr3 100217021 100217056 -59382727 + U2 snRNA snRNA 1 35 -153 3 1349 4255 147 71 70 chr3 100218805 100219706 -59380077 + RMER19B LTR ERVK 1 902 0 3 1349 998 197 138 4 chr3 100220396 100220671 -59379112 + RMER21B LTR ERV1 254 565 -277 3 1349 595 291 48 36 chr3 100220730 100221065 -59378718 + RLTR15 LTR ERVK 3 341 -18 3 1349 308 276 11 33 chr3 100221121 100221211 -59378572 + RSINE1 SINE B4 3 90 -75 3 1349 259 279 76 0 chr3 100222457 100222536 -59377247 - MER102c DNA MER1_type -4 327 243 3 1349 222 125 0 24 chr3 100222638 100222679 -59377104 + (TGGGGG)n Simple_repeat Simple_repeat 2 41 0 3 1349 313 288 105 26 chr3 100222751 100222865 -59376918 - PB1 SINE Alu -2 125 3 3 1349 214 230 0 70 chr3 100223045 100223102 -59376681 - MIR SINE MIR -55 213 151 3 1349 1229 89 16 16 chr3 100223601 100223783 -59376000 + B2_Mm2 SINE B2 1 182 -13 3 1349 402 21 0 0 chr3 100223783 100223830 -59375953 + (GA)n Simple_repeat Simple_repeat 2 48 0 3 1349 830 168 0 28 chr3 100225004 100225180 -59374603 + Lx5 LINE L1 6419 6561 -489 3 1349 570 15 0 0 chr3 100226567 100226634 -59373149 + (TG)n Simple_repeat Simple_repeat 2 68 0 3 1349 670 214 106 8 chr3 100227412 100227544 -59372239 - B1_Mur1 SINE Alu -2 147 3 3 1349 573 55 0 0 chr3 100228114 100228187 -59371596 + (TG)n Simple_repeat Simple_repeat 1 73 0 3 1349 958 208 47 0 chr3 100228209 100228401 -59371382 - B3 SINE B2 -13 203 3 3 1349 1175 102 6 0 chr3 100229259 100229436 -59370347 + (GGAA)n Simple_repeat Simple_repeat 3 180 0 3 1349 428 333 90 29 chr3 100230459 100230703 -59369080 + L3 LINE CR1 4123 4381 -108 3 1349 243 0 0 0 chr3 100231347 100231374 -59368409 + (TTG)n Simple_repeat Simple_repeat 1 27 0 3 1349 388 285 83 18 chr3 100231421 100231589 -59368194 + Charlie14a DNA MER1_type 449 627 -537 3 1349 280 115 35 80 chr3 100232768 100232881 -59366902 + (TA)n Simple_repeat Simple_repeat 2 109 0 3 1349 238 250 0 0 chr3 100233026 100233078 -59366705 + MIRc SINE MIR 97 148 -120 3 1349 203 288 14 70 chr3 100233516 100233587 -59366196 - MIR3 SINE MIR -51 157 91 3 1349 272 222 79 28 chr3 100233741 100233824 -59365959 - L2a LINE L2 -10 3416 3301 3 1349 360 64 0 0 chr3 100235484 100235531 -59364252 + (TTG)n Simple_repeat Simple_repeat 2 48 0 3 1349 1283 267 74 9 chr3 100236985 100237321 -59362462 - MTD LTR MaLR -44 375 18 3 1349 257 342 62 0 chr3 100237379 100237525 -59362258 + L1MD2 LINE L1 6177 6331 -28 3 1349 234 0 0 0 chr3 100237526 100237552 -59362231 + (TAA)n Simple_repeat Simple_repeat 2 27 0 3 1349 801 249 345 24 chr3 100237601 100237888 -59361895 - MTE2b LTR MaLR 0 379 1 3 1349 260 250 95 27 chr3 100238021 100238095 -59361688 - ID4 SINE ID 0 83 5 3 1349 557 246 172 25 chr3 100238899 100239103 -59360680 - Tigger7 DNA MER2_type -3 2488 2255 3 1349 363 23 0 0 chr3 100239271 100239315 -59360468 + (CA)n Simple_repeat Simple_repeat 1 44 0 3 1349 384 22 0 0 chr3 100239317 100239362 -59360421 + (TG)n Simple_repeat Simple_repeat 2 46 0 3 1349 207 0 0 0 chr3 100239362 100239384 -59360399 + (TA)n Simple_repeat Simple_repeat 2 24 0 3 1349 7225 40 3 1 chr3 100239632 100240496 -59359287 + L1Md_F2 LINE L1 5717 6582 0 3 1349 221 302 79 56 chr3 100240634 100240760 -59359023 - MIR3 SINE MIR -6 202 74 3 1349 234 62 0 0 chr3 100241725 100241757 -59358026 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 3 1349 252 244 0 0 chr3 100245006 100245051 -59354732 + L2c LINE L2 3121 3165 -222 3 1349 1119 39 0 0 chr3 100245568 100245696 -59354087 + B1_Mus1 SINE Alu 2 129 -19 3 1349 729 279 7 62 chr3 100245982 100246025 -59353758 - L1MA8 LINE L1 -46 5801 5763 3 1349 1583 157 27 63 chr3 100246025 100246359 -59353424 - RLTRETN_Mm LTR ERVK 0 322 1 3 1349 735 270 32 26 chr3 100246359 100246646 -59353137 - Lx5 LINE L1 -462 5829 5510 3 1349 327 258 25 2 chr3 100246630 100246738 -59353045 + Lx5 LINE L1 5828 5945 -1699 3 1349 182 282 77 66 chr3 100246895 100246986 -59352797 + MIR3 SINE MIR 65 156 -52 3 1349 222 148 0 0 chr3 100247237 100247291 -59352492 + (GA)n Simple_repeat Simple_repeat 2 55 0 3 1349 201 83 0 77 chr3 100247770 100247822 -59351961 + G-rich Low_complexity Low_complexity 1 48 0 3 1349 188 318 15 29 chr3 100248795 100248863 -59350920 - L2a LINE L2 -14 3412 3346 3 1349 658 241 92 0 chr3 100248979 100249120 -59350663 + RSINE1 SINE B4 2 155 -10 3 1349 1074 312 33 53 chr3 100249299 100249658 -59350125 + ORR1E LTR MaLR 6 357 -2 3 1349 450 0 0 0 chr3 100249776 100249826 -59349957 + (GA)n Simple_repeat Simple_repeat 1 50 0 3 1349 367 319 162 62 chr3 100250848 100251299 -59348484 + MLT1F2 LTR MaLR 1 496 -64 3 1349 196 292 44 44 chr3 100251557 100251625 -59348158 + L2b LINE L2 3109 3176 -199 3 1349 302 148 19 0 chr3 100252900 100252954 -59346829 + 4.5SRNA scRNA scRNA 33 87 -7 3 1349 845 230 12 0 chr3 100252956 100253117 -59346666 + RSINE1 SINE B4 3 165 0 3 1349 230 263 48 78 chr3 100255086 100255189 -59344594 + MIR SINE MIR 126 225 -37 3 1349 240 264 45 54 chr3 100255214 100255326 -59344457 + Tigger15a DNA TcMar 536 646 -69 3 1349 204 40 0 0 chr3 100255508 100255533 -59344250 + (CAA)n Simple_repeat Simple_repeat 2 26 0 3 1349 1158 184 65 0 chr3 100255563 100255764 -59344019 - B3 SINE B2 0 216 3 3 1349 417 307 215 55 chr3 100255917 100256516 -59343267 + L1MEc LINE L1 218 912 -5488 3 1349 814 164 0 46 chr3 100256516 100256669 -59343114 + B1_Mur4 SINE Alu 4 149 -1 3 1349 625 288 185 8 chr3 100256696 100257064 -59342719 + L1MC2 LINE L1 5477 5909 -435 3 1349 203 298 0 23 chr3 100257416 100257444 -59342339 + (CAA)n Simple_repeat Simple_repeat 1 28 0 3 1349 3896 109 99 52 chr3 100257444 100258161 -59341622 + RMER17A LTR ERVK 1 751 0 3 1349 203 298 0 23 chr3 100258161 100258218 -59341565 + (CAA)n Simple_repeat Simple_repeat 2 57 0 4 1349 786 225 129 10 chr3 100258606 100258799 -59340984 - B3 SINE B2 0 216 1 4 1349 1183 69 0 0 chr3 100258890 100259035 -59340748 - B1_Mm SINE Alu -1 146 2 4 1349 827 168 14 20 chr3 100259087 100259233 -59340550 + B1_Mur4 SINE Alu 5 149 -1 4 1349 387 344 100 84 chr3 100259233 100259736 -59340047 + HAL1 LINE L1 1028 1539 -968 4 1349 720 148 94 22 chr3 100260237 100260375 -59339408 + B1_Mur4 SINE Alu 2 149 -1 4 1349 276 301 129 43 chr3 100260479 100260642 -59339141 + L2c LINE L2 2708 2884 -535 4 1349 212 269 51 13 chr3 100260755 100260834 -59338949 + L2c LINE L2 3262 3343 -44 4 1349 340 328 102 66 chr3 100261177 100261517 -59338266 - MLT1A1 LTR MaLR -6 402 1 4 1349 256 341 149 74 chr3 100261593 100261606 -59338177 + ORR1E LTR MaLR 8 20 -339 4 1349 2612 125 23 3 chr3 100261606 100261992 -59337791 - ORR1B1 LTR MaLR 0 394 1 4 1349 256 341 149 74 chr3 100261992 100262301 -59337482 + ORR1E LTR MaLR 21 354 -5 4 1349 216 97 0 0 chr3 100263232 100263263 -59336520 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 4 1349 234 284 17 136 chr3 100263646 100263764 -59336019 + MER5A DNA MER1_type 61 164 -25 4 1349 189 258 217 33 chr3 100263925 100264017 -59335766 - MIRc SINE MIR -117 151 43 4 1349 216 0 0 0 chr3 100264265 100264289 -59335494 + (TTTTG)n Simple_repeat Simple_repeat 3 26 0 4 1349 999 213 29 29 chr3 100264720 100264733 -59335050 - ID_B1 SINE B4 0 224 214 4 1349 225 0 0 0 chr3 100264733 100264758 -59335025 + (TTCA)n Simple_repeat Simple_repeat 3 27 0 4 1349 999 213 29 29 chr3 100264758 100264952 -59334831 - ID_B1 SINE B4 -11 213 17 4 1349 715 266 148 40 chr3 100265040 100265364 -59334419 - MTE2b LTR MaLR -3 376 18 4 1349 435 351 108 0 chr3 100265647 100265795 -59333988 - RSINE1 SINE B4 0 165 2 4 1349 570 336 97 14 chr3 100265812 100266121 -59333662 + MER58B DNA MER1_type 1 340 -1 4 1349 191 269 45 0 chr3 100266900 100266967 -59332816 + MIRc SINE MIR 83 152 -116 4 1349 983 98 90 0 chr3 100268178 100268311 -59331472 + B1_Mm SINE Alu 3 147 0 4 1349 200 125 25 0 chr3 100268315 100268355 -59331428 + (CAAAAA)n Simple_repeat Simple_repeat 2 42 0 4 1349 530 272 39 16 chr3 100268439 100268566 -59331217 + RSINE1 SINE B4 1 130 -35 4 1349 704 229 6 38 chr3 100268624 100268783 -59331000 - RSINE1 SINE B4 -8 157 4 4 1349 459 0 0 0 chr3 100269560 100269611 -59330172 + (CA)n Simple_repeat Simple_repeat 1 51 0 4 1350 24 0 0 0 chr3 100271934 100271958 -59327825 + AT_rich Low_complexity Low_complexity 1 24 0 4 1350 200 125 25 0 chr3 100272530 100272570 -59327213 + (CAA)n Simple_repeat Simple_repeat 2 42 0 4 1350 264 30 0 0 chr3 100273106 100273139 -59326644 + (CA)n Simple_repeat Simple_repeat 2 34 0 4 1350 543 31 0 0 chr3 100273139 100273203 -59326580 + (GA)n Simple_repeat Simple_repeat 2 66 0 4 1350 480 179 0 0 chr3 100277843 100277955 -59321828 + (CA)n Simple_repeat Simple_repeat 2 113 0 4 1350 229 273 30 0 chr3 100278312 100278378 -59321405 - ID4 SINE ID -13 70 3 4 1350 180 0 0 0 chr3 100278849 100278869 -59320914 + (A)n Simple_repeat Simple_repeat 1 20 0 4 1350 1020 63 81 6 chr3 100279660 100279820 -59319963 + L1_Mus3 LINE L1 6464 6635 -3 4 1350 447 266 53 0 chr3 100280247 100280360 -59319423 + PB1D7 SINE Alu 1 119 -1 4 1350 213 65 0 0 chr3 100280365 100280396 -59319387 + (A)n Simple_repeat Simple_repeat 1 31 0 4 1350 596 103 28 85 chr3 100280526 100280632 -59319151 - URR1B DNA MER1_type 0 225 126 4 1350 24 0 0 0 chr3 100281788 100281812 -59317971 + AT_rich Low_complexity Low_complexity 1 24 0 4 1350 655 296 0 50 chr3 100281832 100282031 -59317752 + B3A SINE B2 4 192 -6 4 1350 1192 41 7 0 chr3 100282537 100282683 -59317100 + B1_Mus2 SINE Alu 1 147 0 4 1350 597 226 105 0 chr3 100283964 100284088 -59315695 + RSINE1 SINE B4 3 139 -26 4 1350 265 300 44 65 chr3 100284101 100284256 -59315527 - MIR SINE MIR -73 189 37 4 1350 195 188 0 0 chr3 100285341 100285389 -59314394 + CT-rich Low_complexity Low_complexity 2 49 0 4 1350 985 264 68 39 chr3 100285691 100285998 -59313785 + MTEa LTR MaLR 2 317 -62 4 1350 331 59 118 8 chr3 100287625 100287744 -59312039 + (GTTTG)n Simple_repeat Simple_repeat 5 136 0 4 1350 1218 48 7 0 chr3 100287748 100287894 -59311889 - B1_Mm SINE Alu 0 147 1 4 1350 231 344 54 0 chr3 100287993 100288086 -59311697 - L2b LINE L2 -24 3351 3254 4 1350 233 351 61 8 chr3 100288209 100288341 -59311442 + MER33 DNA MER1_type 45 183 -141 4 1350 180 0 0 0 chr3 100288943 100288963 -59310820 + (CAA)n Simple_repeat Simple_repeat 2 21 0 4 1350 24 0 0 0 chr3 100288980 100289004 -59310779 + AT_rich Low_complexity Low_complexity 1 24 0 4 1350 564 15 0 0 chr3 100289270 100289335 -59310448 + (TTAGGG)n Simple_repeat Simple_repeat 6 70 0 4 1350 189 147 0 0 chr3 100290889 100290923 -59308860 + (GGGA)n Simple_repeat Simple_repeat 1 34 0 4 1350 30 0 0 0 chr3 100292935 100292965 -59306818 + GC_rich Low_complexity Low_complexity 1 30 0 4 1350 52 58 0 0 chr3 100293164 100293251 -59306532 + GC_rich Low_complexity Low_complexity 1 87 0 4 1350 653 96 0 56 chr3 100293871 100294014 -59305769 + (CA)n Simple_repeat Simple_repeat 2 136 0 4 1350 515 226 83 0 chr3 100294093 100294226 -59305557 - ID_B1 SINE B4 -2 222 79 4 1350 382 306 89 41 chr3 100294886 100295155 -59304628 - L1ME3A LINE L1 -312 5861 5580 4 1350 515 252 40 34 chr3 100295362 100295510 -59304273 - RSINE1 SINE B4 -13 152 4 4 1350 434 261 163 5 chr3 100295519 100295885 -59303898 - L1ME3A LINE L1 -697 5482 5033 4 1350 585 152 0 0 chr3 100296590 100296695 -59303088 + CT-rich Low_complexity Low_complexity 2 106 0 4 1350 1945 145 84 20 chr3 100297331 100297676 -59302107 + ORR1B2 LTR MaLR 1 367 0 4 1350 251 294 214 10 chr3 100297947 100298091 -59301692 + MIR SINE MIR 20 185 -83 4 1350 495 308 223 58 chr3 100298524 100298986 -59300797 - MLT1N2 LTR MaLR -2 560 23 4 1350 188 346 37 12 chr3 100299333 100299415 -59300368 + MIR3 SINE MIR 101 184 -24 4 1350 186 43 0 0 chr3 100299450 100299473 -59300310 + (CTTCG)n Simple_repeat Simple_repeat 5 27 0 4 1350 274 345 34 25 chr3 100299935 100300054 -59299729 + MER5A DNA MER1_type 69 188 -1 4 1350 1070 263 28 11 chr3 100300705 100300989 -59298794 - MTE2b LTR MaLR -17 362 74 4 1350 296 320 85 31 chr3 100300999 100301128 -59298655 - LTR33 LTR ERVL -115 400 265 4 1350 1731 167 80 39 chr3 100301299 100301636 -59298147 - ORR1B2 LTR MaLR -16 351 1 4 1350 273 299 65 50 chr3 100301943 100302075 -59297708 + MLT1A1 LTR MaLR 11 142 -223 4 1350 872 172 14 0 chr3 100302240 100302385 -59297398 + B1_Mur3 SINE Alu 2 148 -1 4 1350 242 296 24 12 chr3 100302478 100302560 -59297223 - MIR SINE MIR -21 241 159 4 1350 455 344 19 6 chr3 100303621 100303636 -59296147 - RSINE1 SINE B4 -1 164 150 4 1350 318 80 0 0 chr3 100303636 100303686 -59296097 + (TCTG)n Simple_repeat Simple_repeat 1 50 0 4 1350 455 344 19 6 chr3 100303686 100303831 -59295952 - RSINE1 SINE B4 -16 149 3 4 1350 690 311 125 8 chr3 100303868 100304124 -59295659 + RMER15 LTR ERVL 276 561 -14 4 1350 1892 139 40 6 chr3 100304317 100304638 -59295145 - ORR1B2 LTR MaLR 0 367 26 4 1350 2694 118 0 141 chr3 100304731 100305236 -59294547 + RLTR10C LTR ERVK 1 434 -2 4 1350 213 182 0 0 chr3 100305567 100305600 -59294183 + (TCCG)n Simple_repeat Simple_repeat 3 35 0 4 1350 1288 148 33 9 chr3 100305602 100305814 -59293969 + URR1B DNA MER1_type 8 224 -1 4 1350 252 208 14 14 chr3 100306775 100306848 -59292935 - Lx7 LINE L1 -18 7678 7606 4 1350 925 274 10 5 chr3 100307326 100307531 -59292252 + ID_B1 SINE B4 2 207 -17 4 1350 289 336 70 0 chr3 100307545 100307673 -59292110 + MIR SINE MIR 51 187 -75 4 1350 763 126 110 0 chr3 100308495 100308622 -59291161 + B1_Mus1 SINE Alu 2 142 -6 4 1350 372 165 22 11 chr3 100308643 100308735 -59291048 + GA-rich Low_complexity Low_complexity 4 96 0 4 1350 223 184 0 0 chr3 100308735 100308773 -59291010 + A-rich Low_complexity Low_complexity 3 40 0 4 1350 209 250 75 64 chr3 100308833 100308890 -59290893 + MIRm SINE MIR 39 102 -174 4 1350 1867 155 17 67 chr3 100308890 100309236 -59290547 + ORR1A4 LTR MaLR 1 329 0 4 1350 209 250 75 64 chr3 100309236 100309272 -59290511 + MIRm SINE MIR 103 133 -143 4 1350 198 382 0 0 chr3 100310146 100310222 -59289561 - MIR SINE MIR -156 106 31 4 1350 812 289 165 31 chr3 100310586 100310943 -59288840 - MER57C2 LTR ERV1 -18 416 12 4 1350 182 384 97 48 chr3 100311852 100311987 -59287796 - MIRb SINE MIR -30 238 93 4 1350 2074 127 136 0 chr3 100311987 100312318 -59287465 - ORR1C1 LTR MaLR 0 378 3 4 1350 182 384 97 48 chr3 100312318 100312409 -59287374 - MIRb SINE MIR -176 92 1 4 1350 1217 216 240 12 chr3 100312512 100312929 -59286854 - MLT2B2 LTR ERVL -1 514 3 4 1350 1368 76 11 21 chr3 100312932 100313120 -59286663 + B2_Mm2 SINE B2 1 186 -9 4 1350 507 277 175 64 chr3 100313411 100313662 -59286121 + B4 SINE B4 2 280 -12 4 1350 381 43 0 0 chr3 100313675 100313722 -59286061 + (CA)n Simple_repeat Simple_repeat 1 47 0 4 1350 373 323 124 56 chr3 100313871 100314209 -59285574 - MLT1A0 LTR MaLR -4 361 1 4 1350 269 304 131 71 chr3 100314343 100314541 -59285242 - L2 LINE L2 -396 3023 2814 4 1350 1296 87 47 0 chr3 100315054 100315226 -59284557 + B2_Mm2 SINE B2 2 181 -14 4 1350 401 104 30 0 chr3 100315256 100315323 -59284460 + B2_Mm2 SINE B2 127 195 0 4 1350 228 67 0 0 chr3 100316538 100316568 -59283215 + (TG)n Simple_repeat Simple_repeat 1 30 0 4 1350 267 379 91 58 chr3 100316628 100316936 -59282847 - MLT1I LTR MaLR -31 380 63 4 1350 237 290 180 36 chr3 100317177 100317288 -59282495 - MIR SINE MIR -63 145 19 4 1350 290 326 126 0 chr3 100317459 100317554 -59282229 + MIRc SINE MIR 35 141 -127 5 1350 214 284 0 39 chr3 100317770 100317802 -59281981 + (CA)n Simple_repeat Simple_repeat 1 32 0 5 1350 3238 139 17 28 chr3 100317802 100318335 -59281448 - RLTR11A2 LTR ERVK 0 527 1 5 1350 214 284 0 39 chr3 100318335 100318379 -59281404 + (CA)n Simple_repeat Simple_repeat 1 42 0 5 1350 371 269 0 18 chr3 100318462 100318625 -59281158 + (TA)n Simple_repeat Simple_repeat 2 161 0 5 1350 308 290 152 46 chr3 100318864 100319081 -59280702 - MIRb SINE MIR -22 246 3 5 1350 378 341 174 23 chr3 100320764 100320983 -59278800 + L2b LINE L2 3095 3346 -29 5 1350 330 299 0 18 chr3 100322223 100322332 -59277451 + L1ME1 LINE L1 6026 6132 -47 5 1350 661 293 6 6 chr3 100322340 100322498 -59277285 + ID_B1 SINE B4 2 159 -65 5 1350 808 168 7 0 chr3 100322507 100322650 -59277133 - URR1A DNA MER1_type -4 222 79 5 1350 661 289 18 18 chr3 100325734 100325903 -59273880 - B3A SINE B2 -29 169 1 5 1350 1396 201 114 31 chr3 100327429 100327779 -59272004 + MTEb LTR MaLR 1 379 0 5 1350 2360 154 31 38 chr3 100327961 100328385 -59271398 - MTC LTR MaLR 0 421 1 5 1350 435 38 0 0 chr3 100328543 100328596 -59271187 + (GA)n Simple_repeat Simple_repeat 2 54 0 5 1350 598 173 295 82 chr3 100328929 100329112 -59270671 - URR1B DNA MER1_type -3 222 1 5 1350 252 248 6 223 chr3 100329163 100329329 -59270454 + MIRc SINE MIR 8 137 -131 5 1350 1327 101 5 5 chr3 100329343 100329533 -59270250 + B2_Mm2 SINE B2 2 191 -4 5 1350 441 297 0 8 chr3 100329930 100330059 -59269724 + L1M5 LINE L1 5563 5690 -434 5 1350 204 346 0 69 chr3 100330821 100330908 -59268875 - MIR SINE MIR -67 141 61 5 1350 360 276 91 10 chr3 100330999 100331098 -59268685 - PB1D10 SINE Alu -6 111 5 5 1350 849 319 52 19 chr3 100331101 100331564 -59268219 - L1MB7 LINE L1 -43 6141 5664 5 1350 691 256 8 0 chr3 100332084 100332213 -59267570 + RSINE1 SINE B4 3 132 -33 5 1350 264 59 0 0 chr3 100332410 100332444 -59267339 + (A)n Simple_repeat Simple_repeat 1 34 0 5 1350 250 277 159 28 chr3 100332485 100332630 -59267153 - MIRb SINE MIR -32 236 73 5 1350 446 260 39 0 chr3 100333098 100333225 -59266558 - ID_B1 SINE B4 -5 219 88 5 1350 315 299 51 0 chr3 100334035 100334152 -59265631 + MIRb SINE MIR 34 156 -112 5 1350 282 277 39 87 chr3 100334796 100334899 -59264884 - Tigger5 DNA MER2_type -1 2405 2308 5 1350 394 241 96 15 chr3 100334957 100335092 -59264691 - MER57C2 LTR ERV1 -59 375 230 5 1350 361 342 38 43 chr3 100335322 100335533 -59264250 - Tigger5 DNA MER2_type -2196 210 1 5 1350 1984 156 39 8 chr3 100335940 100336301 -59263482 - MTC LTR MaLR 0 421 50 5 1350 356 275 27 9 chr3 100336342 100336452 -59263331 - Tigger5 DNA MER2_type -2196 210 99 5 1350 233 320 128 0 chr3 100338399 100338524 -59261259 - MIRc SINE MIR -60 208 68 5 1350 216 306 64 9 chr3 100338508 100338617 -59261166 - MIR3 SINE MIR -12 196 82 5 1350 262 202 0 66 chr3 100340514 100340586 -59259197 + MIRc SINE MIR 88 157 -119 5 1350 256 24 49 0 chr3 100340616 100340657 -59259126 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 5 1350 2766 113 10 3 chr3 100341413 100341804 -59257979 - ORR1B1 LTR MaLR 0 394 1 5 1350 331 287 134 8 chr3 100341903 100342110 -59257673 - RSINE1 SINE B4 0 224 2 5 1350 198 0 0 0 chr3 100342474 100342496 -59257287 + (TGAA)n Simple_repeat Simple_repeat 3 24 0 5 1350 360 314 25 8 chr3 100343054 100343176 -59256607 - L1M5 LINE L1 -408 5756 5633 5 1350 697 281 73 22 chr3 100343392 100343665 -59256118 + MLT1E1A LTR MaLR 327 613 -67 5 1350 246 305 31 31 chr3 100344174 100344272 -59255511 - LTR16D1 LTR ERVL -2 673 576 5 1350 1279 170 32 0 chr3 100344415 100344633 -59255150 - URR1B DNA MER1_type 0 225 1 5 1350 1169 88 0 0 chr3 100345296 100345443 -59254340 - B1_Mus1 SINE Alu 0 148 2 5 1350 866 121 23 0 chr3 100345714 100345846 -59253937 + Lx7 LINE L1 4997 5131 -749 5 1350 3622 203 19 14 chr3 100346274 100347111 -59252672 + Lx7 LINE L1 5127 5969 -1727 5 1350 279 0 0 0 chr3 100347111 100347142 -59252641 + (TGGA)n Simple_repeat Simple_repeat 1 31 0 5 1350 1613 196 112 32 chr3 100347142 100347504 -59252279 + Lx7 LINE L1 6061 6453 -1243 5 1350 384 152 0 0 chr3 100347504 100347570 -59252213 + A-rich Low_complexity Low_complexity 1 66 0 5 1350 822 225 6 0 chr3 100347572 100347750 -59252033 + B3 SINE B2 32 210 -6 5 1350 272 224 12 50 chr3 100348389 100348469 -59251314 + PB1D10 SINE Alu 24 100 -17 5 1350 218 109 273 0 chr3 100348486 100348541 -59251242 - B1_Mus2 SINE Alu 0 147 78 5 1350 301 304 27 0 chr3 100348589 100348701 -59251082 + B4 SINE B4 30 144 -148 5 1350 31 0 0 0 chr3 100349347 100349378 -59250405 + AT_rich Low_complexity Low_complexity 1 31 0 5 1350 367 248 59 22 chr3 100349542 100349678 -59250105 - L1M5 LINE L1 -3870 2276 2136 5 1350 245 328 24 77 chr3 100349673 100349836 -59249947 - HAL1 LINE L1 -893 1614 1464 5 1350 639 0 0 0 chr3 100349836 100349907 -59249876 + (CACCAT)n Simple_repeat Simple_repeat 1 71 0 5 1350 245 328 24 77 chr3 100349907 100349951 -59249832 - HAL1 LINE L1 -1044 1463 1419 5 1350 378 234 171 8 chr3 100349951 100350080 -59249703 - MLT1A1 LTR MaLR 0 408 259 5 1350 248 219 62 15 chr3 100351683 100351748 -59248035 - tRNA-Ala-GCY_ tRNA tRNA -7 68 1 5 1350 425 121 0 0 chr3 100351947 100352013 -59247770 + B2_Mm2 SINE B2 7 72 -123 5 1350 335 23 23 0 chr3 100352449 100352493 -59247290 + (GA)n Simple_repeat Simple_repeat 1 45 0 5 1350 272 270 79 0 chr3 100352498 100352587 -59247196 - RSINE1 SINE B4 -5 160 65 5 1350 573 15 0 0 chr3 100352994 100353060 -59246723 + (TG)n Simple_repeat Simple_repeat 2 67 0 5 1350 326 277 9 35 chr3 100353089 100353205 -59246578 - PB1D10 SINE Alu -2 115 3 5 1350 294 306 192 34 chr3 100353215 100353641 -59246142 - L1MEf LINE L1 -4644 1556 1107 5 1350 214 169 51 0 chr3 100353748 100353807 -59245976 + (TTTG)n Simple_repeat Simple_repeat 3 64 0 5 1350 539 176 150 27 chr3 100354024 100354211 -59245572 + L1M5 LINE L1 3009 3218 -2928 5 1350 495 0 0 0 chr3 100354541 100354596 -59245187 + (TCTA)n Simple_repeat Simple_repeat 2 56 0 5 1350 234 0 0 0 chr3 100354596 100354621 -59245162 + (TG)n Simple_repeat Simple_repeat 1 26 0 5 1350 616 236 57 0 chr3 100354624 100354764 -59245019 - B3A SINE B2 -50 148 1 5 1350 208 166 66 60 chr3 100354777 100354944 -59244839 + (CACCT)n Simple_repeat Simple_repeat 4 171 0 5 1350 266 176 54 48 chr3 100354957 100355124 -59244659 + (CACCT)n Simple_repeat Simple_repeat 4 171 0 5 1350 228 135 0 0 chr3 100355607 100355644 -59244139 + B3 SINE B2 43 79 -137 5 1350 1409 211 105 99 chr3 100355646 100356279 -59243504 + RLTR18 LTR ERVK 7 504 -8 5 1350 378 0 0 0 chr3 100356304 100356346 -59243437 + (CA)n Simple_repeat Simple_repeat 2 43 0 5 1350 512 244 24 0 chr3 100356349 100356476 -59243307 + B3 SINE B2 87 216 0 5 1350 205 267 129 64 chr3 100358724 100358864 -59240919 - MIRb SINE MIR -77 191 43 5 1350 21 0 0 0 chr3 100360216 100360237 -59239546 + AT_rich Low_complexity Low_complexity 1 21 0 5 1350 378 91 0 0 chr3 100360609 100360664 -59239119 + (CA)n Simple_repeat Simple_repeat 2 56 0 5 1350 726 282 160 23 chr3 100360948 100361296 -59238487 + MTD LTR MaLR 1 359 -20 5 1350 669 151 31 2 chr3 100361324 100361478 -59238305 + B2_Mm2 SINE B2 2 167 -26 5 1350 216 245 58 87 chr3 100361704 100361781 -59238002 + L2 LINE L2 2492 2569 -850 5 1350 1010 131 0 6 chr3 100361781 100361950 -59237833 + (TTTC)n Simple_repeat Simple_repeat 1 168 0 5 1350 1141 56 0 7 chr3 100361951 100362096 -59237687 - B1_Mus1 SINE Alu -3 145 2 5 1350 216 245 58 87 chr3 100362096 100362119 -59237664 + L2 LINE L2 2570 2591 -828 5 1350 213 375 55 39 chr3 100362134 100362442 -59237341 + L2 LINE L2 2670 2982 -437 5 1350 2795 93 61 5 chr3 100362457 100362900 -59236883 + L1_Mur1 LINE L1 3085 3552 -2334 5 1350 429 36 0 0 chr3 100362919 100362974 -59236809 + (TG)n Simple_repeat Simple_repeat 2 56 0 5 1350 668 270 39 22 chr3 100362974 100363156 -59236627 - B3 SINE B2 -30 186 2 5 1350 443 240 10 0 chr3 100363158 100363254 -59236529 + RSINE1 SINE B4 48 144 -21 5 1350 396 0 0 0 chr3 100363374 100363418 -59236365 + (CA)n Simple_repeat Simple_repeat 2 45 0 5 1350 200 128 0 25 chr3 100363746 100363786 -59235997 + A-rich Low_complexity Low_complexity 2 40 0 5 1350 463 295 19 37 chr3 100365468 100365630 -59234153 + RSINE1 SINE B4 5 163 -2 5 1350 305 261 43 43 chr3 100365753 100365845 -59233938 + L1M4 LINE L1 5612 5703 -481 5 1350 267 270 101 0 chr3 100367614 100367703 -59232080 + MER58B DNA MER1_type 239 336 -5 5 1350 22 35 0 0 chr3 100368391 100368420 -59231363 + AT_rich Low_complexity Low_complexity 1 29 0 5 1350 251 109 0 52 chr3 100372215 100372273 -59227510 + T-rich Low_complexity Low_complexity 1 55 0 5 1350 181 298 0 0 chr3 100373112 100373159 -59226624 + MER5A DNA MER1_type 143 189 0 5 1350 7419 87 0 1 chr3 100373447 100374433 -59225350 - L1_Mus1 LINE L1 -175 5708 4724 5 1350 6935 50 1 0 chr3 100374428 100375265 -59224518 + L1_Mus1 LINE L1 5728 6565 -2 5 1350 285 29 0 0 chr3 100375403 100375437 -59224346 + (CA)n Simple_repeat Simple_repeat 2 35 0 5 1350 515 202 0 88 chr3 100375516 100375641 -59224142 + B1_Mur4 SINE Alu 36 149 -1 5 1350 900 147 13 7 chr3 100379455 100379606 -59220177 + RLTR26 LTR ERVK 10 161 -481 5 1350 355 355 11 37 chr3 100379854 100380044 -59219739 + L1MC4a LINE L1 7501 7685 -197 5 1350 401 122 153 0 chr3 100380191 100380289 -59219494 - Lx6 LINE L1 -10 7450 7338 5 1350 206 231 0 0 chr3 100380513 100380552 -59219231 + (CA)n Simple_repeat Simple_repeat 1 39 0 5 1350 271 242 125 10 chr3 100381609 100381705 -59218078 - PB1D10 SINE Alu -2 115 9 5 1350 623 303 107 30 chr3 100381857 100382296 -59217487 + L1MA7 LINE L1 5759 6231 -60 5 1350 474 186 23 0 chr3 100382621 100382707 -59217076 + B1_Mur2 SINE Alu 31 118 -31 6 1350 292 243 75 28 chr3 100382707 100382727 -59217056 + ID_B1 SINE B4 112 222 -2 6 1350 5237 88 79 98 chr3 100382799 100383709 -59216074 + RLTR13B1 LTR ERVK 1 893 0 6 1350 754 270 94 58 chr3 100383901 100384176 -59215607 + B4 SINE B4 8 292 0 6 1350 770 247 39 0 chr3 100385002 100385180 -59214603 + B3A SINE B2 3 187 -11 6 1350 233 345 18 0 chr3 100385291 100385346 -59214437 - FLAM_A SINE Alu -238 57 2 6 1350 246 62 0 0 chr3 100385420 100385452 -59214331 + (CA)n Simple_repeat Simple_repeat 2 33 0 6 1350 1010 255 24 115 chr3 100386486 100386635 -59213148 - L1M3 LINE L1 -1615 4525 4396 6 1350 562 286 57 81 chr3 100386635 100386932 -59212851 - B4A SINE B4 -1 291 2 6 1350 1010 255 24 115 chr3 100386932 100387251 -59212532 - L1M3 LINE L1 -1745 4395 4100 6 1350 303 265 74 22 chr3 100387408 100387543 -59212240 + Lx8 LINE L1 5780 5921 -1552 6 1350 2476 160 115 9 chr3 100388549 100389079 -59210704 - ORR1A3-int LTR MaLR -630 1333 748 6 1350 274 267 25 62 chr3 100389014 100389094 -59210689 - PB1D7 SINE Alu -34 86 10 6 1350 553 286 19 15 chr3 100389094 100389300 -59210483 + L1_Mur3 LINE L1 5233 5439 -441 6 1350 512 220 0 0 chr3 100389308 100389408 -59210375 + Lx9 LINE L1 6716 6815 -829 6 1350 983 229 56 53 chr3 100389421 100389762 -59210021 + Lx9 LINE L1 7297 7638 -6 6 1350 219 139 0 0 chr3 100389769 100389805 -59209978 + (GGA)n Simple_repeat Simple_repeat 3 38 0 6 1350 568 263 76 71 chr3 100389820 100389921 -59209862 + L1_Mur3 LINE L1 5470 5583 -591 6 1350 978 238 64 135 chr3 100389921 100390329 -59209454 - MTE2a LTR MaLR 0 379 1 6 1350 568 263 32 60 chr3 100390329 100390466 -59209317 + L1_Mur3 LINE L1 5550 5681 -199 6 1350 377 293 209 53 chr3 100391896 100392217 -59207566 + MTE2a LTR MaLR 9 379 0 6 1350 318 115 0 0 chr3 100393295 100393347 -59206436 + (CATA)n Simple_repeat Simple_repeat 1 52 0 6 1350 477 248 8 57 chr3 100393464 100393588 -59206195 - PB1D9 SINE Alu 0 120 3 6 1350 849 181 28 0 chr3 100394761 100394905 -59204878 - B1_Mur4 SINE Alu -2 148 1 6 1350 22 70 0 0 chr3 100394910 100394953 -59204830 + AT_rich Low_complexity Low_complexity 1 43 0 6 1350 228 100 0 0 chr3 100395230 100395270 -59204513 + (T)n Simple_repeat Simple_repeat 1 40 0 6 1350 1112 62 0 0 chr3 100395270 100395414 -59204369 - B1_Mus1 SINE Alu 0 148 5 6 1350 42 36 0 0 chr3 100395929 100395985 -59203798 + AT_rich Low_complexity Low_complexity 1 56 0 6 1350 872 143 13 20 chr3 100396213 100396363 -59203420 + B1_Mur4 SINE Alu 2 150 0 6 1350 315 0 0 0 chr3 100396380 100396415 -59203368 + (CA)n Simple_repeat Simple_repeat 1 35 0 6 1350 6636 19 0 0 chr3 100396595 100397352 -59202431 - L1Md_T LINE L1 0 6582 5826 6 1350 5904 18 0 0 chr3 100397352 100398032 -59201751 + L1Md_T LINE L1 5161 5840 -43 6 1350 228 35 0 0 chr3 100399008 100399037 -59200746 + (TCCA)n Simple_repeat Simple_repeat 4 32 0 6 1350 431 206 0 0 chr3 100399037 100399110 -59200673 - ID4_ SINE ID -9 74 2 6 1350 262 297 115 13 chr3 100399772 100399929 -59199854 - L1ME3 LINE L1 -60 6102 5930 6 1350 189 0 0 0 chr3 100400192 100400213 -59199570 + (A)n Simple_repeat Simple_repeat 1 21 0 6 1350 290 330 84 16 chr3 100400821 100401012 -59198771 - HAL1 LINE L1 -815 1692 1489 6 1351 278 213 5 0 chr3 100401255 100401319 -59198464 + MLT1F LTR MaLR 482 547 -2 6 1351 343 282 102 24 chr3 100401852 100402019 -59197764 + MTEa LTR MaLR 191 370 -9 6 1351 196 77 51 0 chr3 100402081 100402120 -59197663 + (GGGA)n Simple_repeat Simple_repeat 4 44 0 6 1351 408 341 58 27 chr3 100402491 100402750 -59197033 + L1ME2 LINE L1 48 314 -6086 6 1351 255 206 31 16 chr3 100403184 100403248 -59196535 + L1ME2 LINE L1 361 425 -5975 6 1351 440 248 143 29 chr3 100403435 100403578 -59196205 - B3A SINE B2 -34 164 4 6 1351 765 320 108 18 chr3 100403743 100404372 -59195411 + L1ME2 LINE L1 465 1150 -5250 6 1351 360 97 0 0 chr3 100404382 100404444 -59195339 + (CA)n Simple_repeat Simple_repeat 2 63 0 6 1351 249 388 19 0 chr3 100404446 100404549 -59195234 + PB1D10 SINE Alu 13 117 0 6 1351 235 229 92 62 chr3 100404585 100404650 -59195133 + ID4_ SINE ID 14 80 -3 6 1351 23 0 0 0 chr3 100404962 100404985 -59194798 + AT_rich Low_complexity Low_complexity 1 23 0 6 1351 359 292 89 33 chr3 100405026 100405288 -59194495 + L1ME2 LINE L1 3616 3892 -2427 6 1351 273 267 99 11 chr3 100405527 100405618 -59194165 + L1ME2 LINE L1 4171 4269 -2050 6 1351 228 370 0 80 chr3 100405804 100405904 -59193879 + B3A SINE B2 2 93 -105 6 1351 516 331 87 46 chr3 100405908 100406320 -59193463 - RMER10A LTR ERVL -13 429 1 6 1351 353 212 15 0 chr3 100406320 100406386 -59193397 + B3A SINE B2 91 157 -41 6 1351 513 71 0 0 chr3 100406392 100406462 -59193321 + (CA)n Simple_repeat Simple_repeat 2 71 0 6 1351 567 171 19 9 chr3 100406542 100406648 -59193135 - PB1D9 SINE Alu -12 108 2 6 1351 366 268 103 21 chr3 100406650 100406844 -59192939 + L1ME2 LINE L1 4550 4759 -1560 6 1351 310 287 118 4 chr3 100406967 100407229 -59192554 + L1MD LINE L1 4670 4961 -1185 6 1351 725 189 16 0 chr3 100407391 100407518 -59192265 + B1_Mur4 SINE Alu 1 129 -21 6 1351 255 256 0 104 chr3 100407437 100407533 -59192250 + RLTR25A LTR ERVK 522 607 -496 6 1351 736 258 48 199 chr3 100408646 100409043 -59190740 + RMER1B Other Other 161 497 -569 6 1351 3794 139 93 12 chr3 100409030 100409708 -59190075 + RMER1A Other Other 292 1024 -6 6 1351 544 278 148 35 chr3 100409743 100410060 -59189723 + L1ME2 LINE L1 5709 6061 -276 6 1351 234 0 0 0 chr3 100411498 100411524 -59188259 + (CAA)n Simple_repeat Simple_repeat 2 27 0 6 1351 3227 94 13 2 chr3 100411787 100412255 -59187528 + Lx2A1 LINE L1 6536 7008 0 6 1351 403 281 46 15 chr3 100412349 100412479 -59187304 - L2a LINE L2 -17 3409 3276 6 1351 371 311 139 30 chr3 100412495 100412697 -59187086 - MIR SINE MIR -28 234 11 6 1351 1455 211 127 14 chr3 100412780 100413141 -59186642 + RMER15 LTR ERVL 174 575 0 6 1351 358 260 96 0 chr3 100413471 100413575 -59186208 - RSINE1 SINE B4 -3 162 49 6 1351 675 182 187 32 chr3 100413798 100413985 -59185798 - B3 SINE B2 0 216 1 6 1351 223 200 0 20 chr3 100414100 100414151 -59185632 + A-rich Low_complexity Low_complexity 2 51 0 6 1351 797 70 20 27 chr3 100415791 100415938 -59183845 + (GAGAA)n Simple_repeat Simple_repeat 4 149 0 6 1351 205 118 59 0 chr3 100415938 100415972 -59183811 + GA-rich Low_complexity Low_complexity 1 36 0 6 1351 320 294 55 64 chr3 100416146 100416255 -59183528 - PB1D7 SINE Alu 0 120 13 6 1351 595 244 60 64 chr3 100416256 100416343 -59183440 - L1MB4 LINE L1 -174 6006 5910 6 1351 546 57 0 0 chr3 100416343 100416413 -59183370 + (TAGA)n Simple_repeat Simple_repeat 4 73 0 6 1351 595 244 60 64 chr3 100416413 100416592 -59183191 - L1MB4 LINE L1 -271 5909 5741 6 1351 388 258 90 41 chr3 100416597 100416765 -59183018 - MLT1A1 LTR MaLR -7 401 201 6 1351 608 243 125 38 chr3 100417062 100417610 -59182173 - L1MB4 LINE L1 -503 5677 5086 6 1351 1987 299 44 65 chr3 100417880 100418696 -59181087 + Lx9 LINE L1 6513 7311 -333 6 1351 390 198 36 0 chr3 100418713 100418824 -59180959 + (CATATA)n Simple_repeat Simple_repeat 6 120 0 6 1351 1011 316 79 36 chr3 100422975 100423444 -59176339 + RMER5 LTR ERV1 46 534 0 6 1351 301 287 33 50 chr3 100423606 100423727 -59176056 - L1M5 LINE L1 -1895 4251 4133 6 1351 32 57 0 0 chr3 100424145 100424198 -59175585 + AT_rich Low_complexity Low_complexity 1 53 0 6 1351 1222 35 0 0 chr3 100424253 100424397 -59175386 + B1_Mus1 SINE Alu 4 147 -1 6 1351 183 365 0 0 chr3 100425193 100425256 -59174527 - L2a LINE L2 -332 3094 3032 6 1351 556 279 175 23 chr3 100425804 100426193 -59173590 + BLACKJACK DNA AcHobo 1609 2056 -888 6 1351 21 0 0 0 chr3 100426270 100426291 -59173492 + AT_rich Low_complexity Low_complexity 1 21 0 6 1351 24 24 0 24 chr3 100426492 100426513 -59173270 + AT_rich Low_complexity Low_complexity 1 21 0 6 1351 747 211 196 22 chr3 100426513 100426697 -59173086 + B3 SINE B2 1 216 0 6 1351 24 24 0 24 chr3 100426697 100426717 -59173066 + AT_rich Low_complexity Low_complexity 1 20 0 6 1351 513 285 33 30 chr3 100426780 100427073 -59172710 + L1_Mur3 LINE L1 2058 2352 -3495 6 1351 1727 214 28 51 chr3 100427073 100427166 -59172617 + MTD LTR MaLR 1 86 -333 6 1351 1521 57 0 5 chr3 100427166 100427359 -59172424 + B2_Mm2 SINE B2 1 192 -3 6 1351 1727 214 28 51 chr3 100427359 100427694 -59172089 + MTD LTR MaLR 87 419 0 6 1351 998 223 120 22 chr3 100427699 100428055 -59171728 + MTD-int LTR MaLR 6 487 -771 6 1351 514 285 256 11 chr3 100428057 100428498 -59171285 + L1M2 LINE L1 3794 4342 -1801 6 1351 611 183 8 0 chr3 100428523 100428654 -59171129 + (TA)n Simple_repeat Simple_repeat 2 133 0 6 1351 1397 297 70 29 chr3 100428702 100429502 -59170281 + L1M2 LINE L1 4395 5227 -916 6 1351 1626 126 171 16 chr3 100429502 100429824 -59169959 - RMER6A LTR ERVK -384 372 1 6 1351 23 0 0 0 chr3 100429938 100429961 -59169822 + AT_rich Low_complexity Low_complexity 1 23 0 6 1351 453 302 121 13 chr3 100430284 100430525 -59169258 + MER47B DNA MER2_type 1 267 -151 6 1351 316 295 109 103 chr3 100430589 100430918 -59168865 - L1MEf LINE L1 -4370 2030 1700 6 1351 340 319 39 90 chr3 100431034 100431268 -59168515 - L1MEf LINE L1 -5016 1399 1178 6 1351 5285 161 53 33 chr3 100431964 100432965 -59166818 + Lx7 LINE L1 4752 5777 -103 6 1351 333 0 0 0 chr3 100432965 100433002 -59166781 + (TTTTG)n Simple_repeat Simple_repeat 4 40 0 6 1351 5285 196 31 32 chr3 100433002 100433247 -59166536 + Lx7 LINE L1 5778 6021 -1675 6 1351 6036 196 62 23 chr3 100433253 100434539 -59165244 + Lx7 LINE L1 6360 7696 0 6 1351 395 0 0 0 chr3 100434677 100434731 -59165052 - L1Md_A LINE L1 0 6582 6529 6 1351 25 31 0 0 chr3 100435110 100435142 -59164641 + AT_rich Low_complexity Low_complexity 1 32 0 6 1351 574 333 39 0 chr3 100435150 100435306 -59164477 + RSINE1 SINE B4 4 165 0 6 1351 364 315 149 28 chr3 100436790 100437045 -59162738 + B4A SINE B4 3 288 -4 6 1351 261 118 0 0 chr3 100437125 100437176 -59162607 + (CAGA)n Simple_repeat Simple_repeat 2 52 0 6 1351 456 285 135 43 chr3 100437557 100437839 -59161944 - L1MEf LINE L1 -2225 3921 3614 6 1351 189 0 0 0 chr3 100437946 100437967 -59161816 + (CCTG)n Simple_repeat Simple_repeat 3 23 0 6 1351 505 243 32 58 chr3 100437967 100438155 -59161628 + L1MA4A LINE L1 5750 5932 -371 6 1351 287 203 0 14 chr3 100438377 100438447 -59161336 + GA-rich Low_complexity Low_complexity 2 70 0 6 1351 1261 274 104 49 chr3 100438558 100439154 -59160629 - RLTR18B LTR ERVK -2 614 3 6 1351 969 70 41 21 chr3 100439191 100439336 -59160447 + B1_Mus1 SINE Alu 1 148 0 6 1351 219 150 229 16 chr3 100439546 100439607 -59160176 - PB1D10 SINE Alu -35 82 9 6 1351 472 295 82 101 chr3 100439638 100440053 -59159730 - L1MEf LINE L1 -3389 2757 2351 6 1351 266 310 59 17 chr3 100440190 100440308 -59159475 - L1MEf LINE L1 -4833 1409 1287 6 1351 1650 177 158 14 chr3 100440316 100440682 -59159101 + MTD LTR MaLR 1 419 0 7 1351 351 376 111 28 chr3 100440766 100441495 -59158288 - L1MEf LINE L1 -5001 1135 357 6 1351 1394 207 129 19 chr3 100441647 100442011 -59157772 + MTD LTR MaLR 1 404 -15 7 1351 635 221 140 47 chr3 100444082 100444253 -59155530 + B3 SINE B2 5 191 -25 7 1351 30 27 0 0 chr3 100444413 100444450 -59155333 + AT_rich Low_complexity Low_complexity 1 37 0 7 1351 348 287 108 10 chr3 100444511 100444613 -59155170 + B3A SINE B2 15 126 -72 7 1351 207 0 0 0 chr3 100444978 100445001 -59154782 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 7 1351 2037 189 271 22 chr3 100445361 100445752 -59154031 + RMER19A LTR ERVK 1 497 -240 7 1351 315 0 0 0 chr3 100445752 100445787 -59153996 + (TG)n Simple_repeat Simple_repeat 1 35 0 7 1351 2037 189 271 22 chr3 100445787 100445985 -59153798 + RMER19A LTR ERVK 498 737 0 7 1351 384 304 89 42 chr3 100446783 100446996 -59152787 + L1M4 LINE L1 3465 3687 -2459 7 1351 567 305 88 26 chr3 100446999 100447191 -59152592 + B4A SINE B4 2 205 -87 7 1351 483 274 9 9 chr3 100447237 100447351 -59152432 + RSINE1 SINE B4 20 133 -32 7 1351 455 274 77 67 chr3 100447369 100447546 -59152237 + L1M4 LINE L1 3843 4009 -2137 7 1351 351 0 0 0 chr3 100447546 100447585 -59152198 + (TAA)n Simple_repeat Simple_repeat 3 41 0 7 1351 455 274 77 67 chr3 100447585 100447720 -59152063 + L1M4 LINE L1 4010 4157 -1989 7 1351 1154 171 15 29 chr3 100447979 100448184 -59151599 + B3 SINE B2 1 202 -14 7 1351 24 32 0 0 chr3 100449132 100449163 -59150620 + AT_rich Low_complexity Low_complexity 1 31 0 7 1351 726 221 8 0 chr3 100449515 100449642 -59150141 + B3 SINE B2 1 128 -88 7 1351 623 309 25 59 chr3 100449726 100450012 -59149771 + B4A SINE B4 14 289 -3 7 1351 240 111 0 0 chr3 100450219 100450255 -59149528 + (TAA)n Simple_repeat Simple_repeat 3 38 0 7 1351 932 293 70 12 chr3 100450532 100450860 -59148923 - MLT1A0 LTR MaLR -18 347 1 7 1351 2089 126 14 14 chr3 100451080 100451426 -59148357 + Lx2B LINE L1 6642 6987 -13 7 1351 27 81 0 0 chr3 100451804 100451866 -59147917 + AT_rich Low_complexity Low_complexity 1 62 0 7 1351 195 42 0 0 chr3 100451874 100451898 -59147885 + (GTTTG)n Simple_repeat Simple_repeat 1 24 0 7 1351 992 145 0 7 chr3 100451898 100452035 -59147748 - B1_Mus2 SINE Alu -10 137 1 7 1351 743 158 44 29 chr3 100452957 100453094 -59146689 + B1_Mus2 SINE Alu 1 139 -8 7 1351 305 314 136 20 chr3 100453127 100453429 -59146354 + L1M5 LINE L1 2965 3301 -2845 7 1351 1474 82 0 5 chr3 100453702 100453897 -59145886 - B2_Mm2 SINE B2 -1 194 1 7 1351 250 179 300 25 chr3 100453898 100453978 -59145805 + PB1D9 SINE Alu 12 113 -7 7 1351 210 143 0 0 chr3 100453978 100454013 -59145770 + (TGAA)n Simple_repeat Simple_repeat 1 35 0 7 1351 222 200 22 0 chr3 100454013 100454058 -59145725 + GA-rich Low_complexity Low_complexity 3 48 0 7 1351 895 155 7 13 chr3 100454318 100454468 -59145315 + B1_Mur4 SINE Alu 1 149 -1 7 1351 309 292 42 0 chr3 100454477 100454489 -59145294 + B4A SINE B4 71 85 -207 7 1351 427 295 36 0 chr3 100454489 100454601 -59145182 + PB1D10 SINE Alu 1 116 -1 7 1351 330 330 10 10 chr3 100455300 100455404 -59144379 + RSINE1 SINE B4 3 106 -59 7 1351 561 30 0 0 chr3 100455433 100455500 -59144283 + (CA)n Simple_repeat Simple_repeat 2 68 0 7 1351 896 139 14 14 chr3 100455866 100456012 -59143771 - B1_Mus1 SINE Alu 0 148 3 7 1351 2507 140 48 8 chr3 100456724 100457121 -59142662 + MTC LTR MaLR 1 413 -8 7 1351 414 314 0 31 chr3 100457372 100457500 -59142283 - MER58A DNA MER1_type -100 124 1 7 1351 364 297 79 75 chr3 100458028 100458497 -59141286 + L1M5 LINE L1 3811 4281 -1865 7 1351 659 273 28 65 chr3 100458865 100459112 -59140671 + MTEa LTR MaLR 22 259 -120 7 1351 234 176 59 0 chr3 100459151 100459202 -59140581 + CT-rich Low_complexity Low_complexity 4 57 0 7 1351 25 0 0 0 chr3 100460202 100460227 -59139556 + AT_rich Low_complexity Low_complexity 1 25 0 7 1351 4519 98 11 1 chr3 100462120 100462814 -59136969 - Lx3C LINE L1 -1081 4805 4105 7 1351 7209 72 19 48 chr3 100462812 100464300 -59135483 + Lx3C LINE L1 4824 6301 -670 7 1351 409 125 31 0 chr3 100464300 100464364 -59135419 + ORR1A3 LTR MaLR 206 271 -55 7 1351 645 14 0 0 chr3 100464369 100464443 -59135340 + (GAA)n Simple_repeat Simple_repeat 2 75 0 7 1351 531 0 0 0 chr3 100464446 100464505 -59135278 + (GGGA)n Simple_repeat Simple_repeat 4 62 0 7 1351 5736 75 20 86 chr3 100464505 100464686 -59135097 + Lx3C LINE L1 6307 6486 -490 7 1351 2096 83 39 54 chr3 100464687 100464744 -59135039 - ORR1A2 LTR MaLR 0 327 279 7 1351 2070 50 11 0 chr3 100464744 100465006 -59134777 - L1Md_T LINE L1 0 6582 6318 7 1351 2096 83 39 54 chr3 100465006 100465280 -59134503 - ORR1A2 LTR MaLR -49 278 1 7 1351 2050 104 41 23 chr3 100465282 100465627 -59134156 + Lx3C LINE L1 6494 6844 -132 7 1351 27 29 0 0 chr3 100466021 100466055 -59133728 + AT_rich Low_complexity Low_complexity 1 34 0 7 1351 511 328 112 38 chr3 100466091 100466484 -59133299 + L1M5 LINE L1 3771 4192 -1954 7 1351 333 0 0 0 chr3 100467701 100467738 -59132045 + (CA)n Simple_repeat Simple_repeat 2 38 0 7 1351 186 133 0 0 chr3 100468156 100468186 -59131597 + (TGGGGG)n Simple_repeat Simple_repeat 4 33 0 7 1351 767 262 24 0 chr3 100468430 100468598 -59131185 + B3A SINE B2 1 172 -26 7 1351 345 208 26 13 chr3 100468800 100468878 -59130905 + B4 SINE B4 1 79 -213 7 1351 1073 120 60 0 chr3 100468987 100469170 -59130613 + B2_Mm2 SINE B2 2 195 0 7 1351 590 258 80 53 chr3 100469233 100469421 -59130362 + B4A SINE B4 98 290 -2 7 1351 242 294 0 96 chr3 100469372 100469466 -59130317 + B3 SINE B2 113 197 -19 7 1351 335 362 14 41 chr3 100469618 100469765 -59130018 + ORR1E LTR MaLR 1 143 -216 7 1351 242 245 35 70 chr3 100469780 100469894 -59129889 + ORR1E LTR MaLR 212 321 -49 7 1351 585 255 49 14 chr3 100469929 100470072 -59129711 + B1F SINE Alu 1 148 -1 7 1351 249 301 154 11 chr3 100470278 100470453 -59129330 - L1M5 LINE L1 -3284 2862 2663 7 1351 2647 54 15 0 chr3 100470455 100470790 -59128993 - ORR1A1 LTR MaLR 0 346 7 7 1351 1214 41 0 0 chr3 100470790 100470936 -59128847 + B1_Mm SINE Alu 2 147 0 7 1351 672 143 0 0 chr3 100470936 100471048 -59128735 + (A)n Simple_repeat Simple_repeat 1 112 0 7 1351 516 267 53 5 chr3 100471198 100471386 -59128397 + L1MD LINE L1 3529 3725 -2421 7 1351 478 261 43 56 chr3 100471452 100471614 -59128169 + RSINE1 SINE B4 1 160 -5 7 1351 267 225 24 48 chr3 100471617 100471701 -59128082 + (CATA)n Simple_repeat Simple_repeat 1 82 0 7 1351 823 235 75 63 chr3 100472048 100472229 -59127554 + L1M4 LINE L1 3530 3717 -2429 7 1351 1519 37 21 0 chr3 100472229 100472417 -59127366 + B2_Mm1a SINE B2 2 193 0 7 1351 823 228 383 41 chr3 100472417 100472621 -59127162 + L1M4 LINE L1 3718 3987 -2159 7 1351 245 282 24 16 chr3 100472694 100472820 -59126963 + L1MD LINE L1 4149 4275 -1871 7 1351 590 231 192 4 chr3 100472822 100472997 -59126786 - MTD LTR MaLR -232 187 2 7 1351 307 317 40 40 chr3 100473120 100473245 -59126538 + PB1 SINE Alu 1 125 -2 7 1351 226 222 25 111 chr3 100473344 100473425 -59126358 - RLTR43B LTR ERVK -91 284 211 7 1351 604 290 19 58 chr3 100475424 100475684 -59124099 - B4A SINE B4 -41 251 2 7 1351 222 225 107 53 chr3 100476669 100476744 -59123039 - L2c LINE L2 -61 3326 3248 7 1351 210 150 0 0 chr3 100477306 100477346 -59122437 + (TTTTTG)n Simple_repeat Simple_repeat 2 41 0 7 1351 1187 21 7 7 chr3 100477358 100477503 -59122280 - B1_Mm SINE Alu -2 145 1 7 1351 443 287 0 65 chr3 100478561 100478684 -59121099 + PB1D10 SINE Alu 3 117 0 7 1351 180 111 0 0 chr3 100478726 100478753 -59121030 + (A)n Simple_repeat Simple_repeat 1 27 0 7 1351 440 328 169 27 chr3 100478793 100479125 -59120658 + MTEa LTR MaLR 1 379 0 7 1351 378 242 45 68 chr3 100479125 100479243 -59120540 + MTEa-int LTR MaLR 1 115 -1465 7 1351 2153 223 135 96 chr3 100479243 100479760 -59120023 + RCHARR1 DNA MER1_type 3 592 -382 7 1351 682 233 0 70 chr3 100479760 100479917 -59119866 + RSINE1 SINE B4 3 148 -17 7 1351 195 129 0 0 chr3 100479927 100479958 -59119825 + (CA)n Simple_repeat Simple_repeat 2 32 0 7 1351 2153 223 135 96 chr3 100479958 100480271 -59119512 + RCHARR1 DNA MER1_type 593 877 -97 7 1351 450 0 0 0 chr3 100480280 100480330 -59119453 + (TA)n Simple_repeat Simple_repeat 2 51 0 7 1351 1822 276 36 5 chr3 100480383 100480823 -59118960 + MTEa-int LTR MaLR 117 570 -1010 7 1351 784 305 0 28 chr3 100480826 100481008 -59118775 + B3A SINE B2 15 191 -7 7 1351 246 310 0 14 chr3 100481044 100481116 -59118667 + MTEa-int LTR MaLR 563 633 -947 7 1351 546 248 99 7 chr3 100481117 100481259 -59118524 + RSINE1 SINE B4 11 165 0 7 1351 24 0 0 0 chr3 100481263 100481287 -59118496 + AT_rich Low_complexity Low_complexity 1 24 0 7 1351 1201 48 0 0 chr3 100481299 100481446 -59118337 + B1_Mus2 SINE Alu 1 147 0 7 1351 3868 248 40 43 chr3 100481469 100482413 -59117370 + MTEa-int LTR MaLR 614 1554 -26 7 1351 1154 68 0 13 chr3 100482413 100482563 -59117220 + B1_Mus1 SINE Alu 1 148 0 7 1351 314 303 95 34 chr3 100482615 100482762 -59117021 + MLT2B3 LTR ERVL 1 156 -398 7 1351 791 298 120 18 chr3 100483108 100483410 -59116373 + MTEa LTR MaLR 44 378 -1 7 1351 449 218 169 71 chr3 100483482 100483665 -59116118 + B3 SINE B2 14 214 -2 7 1351 621 177 93 1 chr3 100483732 100483865 -59115918 - B1_Mur1 SINE Alu 0 150 1 7 1351 1099 36 0 48 chr3 100484025 100484172 -59115611 + B1_Mus2 SINE Alu 2 141 -6 7 1351 187 232 0 125 chr3 100485408 100485472 -59114311 + L2 LINE L2 2847 2902 -517 7 1351 450 272 74 40 chr3 100485538 100485714 -59114069 - MER102a DNA MER1_type -75 255 74 7 1351 22 0 0 0 chr3 100488087 100488109 -59111674 + AT_rich Low_complexity Low_complexity 1 22 0 7 1351 23 0 0 0 chr3 100488926 100488949 -59110834 + AT_rich Low_complexity Low_complexity 1 23 0 7 1351 396 59 0 0 chr3 100489436 100489487 -59110296 + (TCC)n Simple_repeat Simple_repeat 2 52 0 7 1351 30 27 0 0 chr3 100489937 100489974 -59109809 + GC_rich Low_complexity Low_complexity 1 37 0 7 1351 248 267 21 32 chr3 100491322 100491415 -59108368 + CT-rich Low_complexity Low_complexity 4 95 0 7 1351 32 0 0 0 chr3 100491593 100491625 -59108158 + AT_rich Low_complexity Low_complexity 1 32 0 7 1351 779 319 189 46 chr3 100492837 100493175 -59106608 + MTE-int LTR MaLR 706 1092 -488 7 1351 1113 179 61 0 chr3 100493175 100493387 -59106396 - URR1A DNA MER1_type -1 225 1 7 1351 779 319 189 46 chr3 100493387 100493635 -59106148 + MTE-int LTR MaLR 1093 1382 -198 7 1351 2990 70 5 20 chr3 100493635 100494041 -59105742 + MTB LTR MaLR 1 400 0 7 1351 779 319 189 46 chr3 100494041 100494132 -59105651 + MTE-int LTR MaLR 1383 1481 -99 7 1351 186 342 139 72 chr3 100494983 100495191 -59104592 + MIRc SINE MIR 37 258 -10 8 1351 324 0 0 0 chr3 100495655 100495691 -59104092 + (T)n Simple_repeat Simple_repeat 1 36 0 8 1351 588 184 176 0 chr3 100495933 100496069 -59103714 + B3 SINE B2 57 216 0 8 1351 1040 75 37 0 chr3 100496118 100496252 -59103531 + B1_Mus2 SINE Alu 2 140 -7 8 1351 243 130 0 0 chr3 100496865 100496911 -59102872 + Lx3A LINE L1 6934 6979 -2 8 1351 407 310 14 7 chr3 100497032 100497178 -59102605 - B1_Mur1 SINE Alu -1 148 2 8 1351 24 32 0 0 chr3 100497187 100497218 -59102565 + AT_rich Low_complexity Low_complexity 1 31 0 8 1351 180 135 0 0 chr3 100497274 100497311 -59102472 + (T)n Simple_repeat Simple_repeat 1 37 0 8 1351 1183 68 0 0 chr3 100497311 100497459 -59102324 - B1_Mus1 SINE Alu 0 148 1 8 1351 641 211 0 0 chr3 100497500 100497609 -59102174 - B3A SINE B2 -89 109 1 8 1351 452 107 27 0 chr3 100497626 100497701 -59102082 + (TTTA)n Simple_repeat Simple_repeat 2 78 0 8 1351 882 135 58 52 chr3 100497701 100497873 -59101910 - B2_Mm2 SINE B2 -18 177 5 8 1351 732 54 0 0 chr3 100498159 100498252 -59101531 + (TTAGG)n Simple_repeat Simple_repeat 3 95 0 8 1351 239 305 72 12 chr3 100498474 100498640 -59101143 + L1MEe LINE L1 1469 1644 -4598 8 1351 200 209 0 0 chr3 100498644 100498687 -59101096 + A-rich Low_complexity Low_complexity 4 46 0 8 1351 207 0 0 0 chr3 100498861 100498884 -59100899 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 8 1351 423 302 0 10 chr3 100498985 100499082 -59100701 - PB1 SINE Alu -2 125 30 8 1351 309 286 92 85 chr3 100499215 100499498 -59100285 + L1MEe LINE L1 2081 2365 -3801 8 1351 237 286 67 8 chr3 100499552 100499686 -59100097 + L1MEe LINE L1 2459 2600 -3546 8 1351 504 307 55 70 chr3 100499695 100499951 -59099832 - L2 LINE L2 -503 2916 2665 8 1351 545 265 90 124 chr3 100500198 100500684 -59099099 + RLTR12B LTR ERVK 32 486 -42 1 1351 277 293 0 24 chr3 100500806 100500890 -59098893 - ID4 SINE ID 0 83 2 2 1351 1322 77 55 0 chr3 100501107 100501289 -59098494 + B2_Mm2 SINE B2 2 193 -2 3 1351 443 246 144 0 chr3 100501323 100501490 -59098293 + B3A SINE B2 26 216 0 4 1351 256 229 77 19 chr3 100502194 100502311 -59097472 - B1_Mus2 SINE Alu -1 149 1 5 1351 234 0 0 0 chr3 100502341 100502367 -59097416 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 6 1351 1182 36 0 0 chr3 100502367 100502504 -59097279 - B1_Mm SINE Alu -10 137 1 7 1351 5077 172 14 10 chr3 100502533 100503452 -59096331 - Lx5 LINE L1 0 7050 6128 8 1351 572 0 15 0 chr3 100504065 100504133 -59095650 + (GGAA)n Simple_repeat Simple_repeat 1 69 0 9 1351 642 310 63 37 chr3 100504664 100504935 -59094848 + B4A SINE B4 3 280 -12 1 1351 188 125 0 48 chr3 100505176 100505218 -59094565 + (CAAA)n Simple_repeat Simple_repeat 2 41 0 1 1351 823 227 58 15 chr3 100505299 100505505 -59094278 + ID_B1 SINE B4 1 215 -9 1 1351 302 123 0 17 chr3 100505559 100505617 -59094166 + (CAT)n Simple_repeat Simple_repeat 1 57 0 1 1351 1193 41 14 0 chr3 100506156 100506301 -59093482 + B1_Mm SINE Alu 1 147 0 1 1351 260 200 136 48 chr3 100506368 100506515 -59093268 + MIR SINE MIR 103 262 0 1 1351 459 0 0 0 chr3 100506566 100506617 -59093166 + (CA)n Simple_repeat Simple_repeat 2 52 0 1 1351 249 331 63 0 chr3 100507058 100507186 -59092597 + L2a LINE L2 3227 3412 -14 1 1351 227 93 23 0 chr3 100508088 100508131 -59091652 + (TTTG)n Simple_repeat Simple_repeat 2 45 0 1 1351 987 37 95 15 chr3 100508135 100508272 -59091511 - B1_Mus1 SINE Alu 0 148 1 1 1351 216 180 0 39 chr3 100509758 100509810 -59089973 + T-rich Low_complexity Low_complexity 2 51 0 2 1351 283 235 73 12 chr3 100510467 100510549 -59089234 - PB1D9 SINE Alu 0 120 34 2 1351 720 260 95 38 chr3 100511239 100511555 -59088228 + RMER15 LTR ERVL 238 571 -4 2 1351 216 0 0 0 chr3 100511587 100511611 -59088172 + (TTTA)n Simple_repeat Simple_repeat 3 26 0 2 1351 1115 78 0 0 chr3 100511612 100511766 -59088017 - B2_Mm2 SINE B2 -41 154 1 2 1351 24 0 0 0 chr3 100512738 100512762 -59087021 + AT_rich Low_complexity Low_complexity 1 24 0 2 1351 1145 214 65 39 chr3 100512896 100513251 -59086532 + MER113 DNA MER1_type 81 444 -77 2 1351 195 42 0 0 chr3 100513330 100513354 -59086429 + (TG)n Simple_repeat Simple_repeat 1 24 0 2 1351 951 205 203 25 chr3 100513534 100513889 -59085894 - MTD LTR MaLR 0 419 2 2 1351 463 255 20 7 chr3 100516455 100516601 -59083182 + (CA)n Simple_repeat Simple_repeat 2 149 0 2 1351 294 125 0 0 chr3 100516611 100516659 -59083124 + (TATATG)n Simple_repeat Simple_repeat 3 50 0 3 1351 510 331 6 0 chr3 100516689 100516867 -59082916 + (CA)n Simple_repeat Simple_repeat 1 179 0 3 1351 342 0 0 0 chr3 100517294 100517332 -59082451 + (T)n Simple_repeat Simple_repeat 1 38 0 3 1351 274 258 112 0 chr3 100517404 100517493 -59082290 + PB1D7 SINE Alu 21 119 -1 3 1351 549 234 193 29 chr3 100517935 100518173 -59081610 - B4A SINE B4 -15 277 1 3 1351 817 111 17 0 chr3 100518455 100518572 -59081211 + PB1D9 SINE Alu 2 120 0 3 1351 261 128 0 0 chr3 100518572 100518619 -59081164 + (A)n Simple_repeat Simple_repeat 1 47 0 3 1351 421 246 71 50 chr3 100518619 100518760 -59081023 + B3A SINE B2 48 191 -7 3 1351 776 270 91 0 chr3 100518826 100519078 -59080705 - L1MA5 LINE L1 -14 6286 6012 3 1351 297 275 62 2 chr3 100519332 100519440 -59080343 + MIRb SINE MIR 92 203 -59 3 1351 690 149 272 29 chr3 100519440 100519613 -59080170 + B3 SINE B2 2 216 0 4 1351 195 42 0 0 chr3 100519618 100519642 -59080141 + (CAAT)n Simple_repeat Simple_repeat 2 25 0 4 1351 356 301 0 17 chr3 100519643 100519758 -59080025 + PB1D10 SINE Alu 5 117 0 4 1351 23 0 0 0 chr3 100519758 100519781 -59080002 + AT_rich Low_complexity Low_complexity 1 23 0 4 1351 968 139 30 0 chr3 100519870 100520035 -59079748 - URR1B DNA MER1_type 0 225 56 4 1351 197 162 27 0 chr3 100520438 100520475 -59079308 + L2a LINE L2 3303 3340 -86 4 1351 910 172 128 12 chr3 100520676 100520989 -59078794 + RLTR33 LTR ERVK 197 593 -85 4 1351 772 259 41 41 chr3 100521547 100521813 -59077970 + B4A SINE B4 6 271 -21 4 1351 432 0 0 0 chr3 100521827 100521875 -59077908 + (TAGA)n Simple_repeat Simple_repeat 4 51 0 4 1351 189 213 0 0 chr3 100521885 100521932 -59077851 + GA-rich Low_complexity Low_complexity 2 48 0 4 1351 290 300 149 6 chr3 100522290 100522471 -59077312 - L1MC4a LINE L1 -1224 6658 6452 5 1351 822 266 32 6 chr3 100522548 100522852 -59076931 + MTE2b LTR MaLR 3 358 -21 5 1351 331 299 34 17 chr3 100523760 100523772 -59076011 + B4 SINE B4 77 90 -202 5 1351 693 216 0 0 chr3 100523772 100523911 -59075872 + B1_Mur1 SINE Alu 2 140 -9 5 1351 232 280 26 39 chr3 100524022 100524100 -59075683 + MIR SINE MIR 112 188 -74 5 1351 570 210 32 71 chr3 100524561 100524715 -59075068 + B1_Mur1 SINE Alu 2 149 0 5 1351 662 199 36 175 chr3 100524799 100525073 -59074710 + RLTR23 LTR ERV1 2 237 -193 5 1351 1194 36 0 0 chr3 100525101 100525241 -59074542 + B1_Mus2 SINE Alu 1 140 -7 5 1351 185 0 40 0 chr3 100525241 100525266 -59074517 + (CAA)n Simple_repeat Simple_repeat 2 27 0 5 1351 997 129 0 48 chr3 100525293 100525377 -59074406 + RLTR23 LTR ERV1 253 328 -102 5 1351 3241 76 0 0 chr3 100525377 100525796 -59073987 - BGLII LTR ERVK 0 421 3 5 1351 997 129 0 48 chr3 100525796 100525898 -59073885 + RLTR23 LTR ERV1 329 430 0 5 1351 1133 281 47 17 chr3 100526023 100526275 -59073508 - MTEa LTR MaLR 0 379 127 6 1351 2223 121 108 124 chr3 100526275 100526728 -59073055 + RLTR41 LTR ERV1 1 446 0 6 1351 1133 281 47 17 chr3 100526728 100526837 -59072946 - MTEa LTR MaLR -253 126 7 6 1351 2221 151 34 14 chr3 100527085 100527538 -59072245 + RLTR1 LTR ERV1 138 624 0 6 1351 822 249 139 35 chr3 100528238 100528496 -59071287 + B4A SINE B4 2 286 -6 6 1351 1543 200 101 39 chr3 100528856 100529250 -59070533 - MTD LTR MaLR -15 404 1 6 1351 870 76 0 0 chr3 100529455 100529574 -59070209 + (GAA)n Simple_repeat Simple_repeat 1 119 0 6 1351 221 293 127 14 chr3 100529857 100529999 -59069784 - L2a LINE L2 -30 3396 3239 6 1351 252 267 17 0 chr3 100530367 100530427 -59069356 + Lx8 LINE L1 7196 7256 -217 6 1351 1188 94 83 6 chr3 100530535 100530716 -59069067 - B2_Mm2 SINE B2 0 195 1 6 1351 216 0 0 0 chr3 100530727 100530751 -59069032 + (CAAAA)n Simple_repeat Simple_repeat 3 26 0 6 1351 1139 48 7 33 chr3 100530900 100531050 -59068733 + B1_Mus2 SINE Alu 2 147 0 7 1351 636 67 0 0 chr3 100531052 100531142 -59068641 + (GAAA)n Simple_repeat Simple_repeat 2 91 0 7 1351 725 157 113 0 chr3 100531172 100531331 -59068452 + RLTR41 LTR ERV1 1 177 -269 7 1352 227 156 127 25 chr3 100532886 100532965 -59066818 - MIRm SINE MIR -128 148 62 7 1352 491 254 99 45 chr3 100533188 100533418 -59066365 - MIR SINE MIR -25 237 4 7 1352 581 246 0 0 chr3 100534688 100534798 -59064985 + RMER1B Other Other 424 533 -533 7 1352 582 170 45 0 chr3 100534799 100534911 -59064872 + RMER1B Other Other 934 1050 -16 7 1352 918 245 10 0 chr3 100534959 100535151 -59064632 + B4 SINE B4 94 287 -5 7 1352 274 291 11 23 chr3 100535491 100535579 -59064204 - MIR SINE MIR -13 249 163 7 1352 555 276 24 24 chr3 100535580 100535747 -59064036 + L1M4 LINE L1 5571 5737 -437 7 1352 793 257 90 26 chr3 100535805 100536073 -59063710 - ORR1D2 LTR MaLR 0 370 86 7 1352 1057 119 21 26 chr3 100536078 100536268 -59063515 + URR1B DNA MER1_type 37 225 0 8 1352 467 228 8 50 chr3 100536268 100536368 -59063415 - ORR1D2 LTR MaLR -264 95 1 7 1352 189 0 0 0 chr3 100537308 100537329 -59062454 + (TGG)n Simple_repeat Simple_repeat 2 22 0 8 1352 591 180 0 0 chr3 100537534 100537645 -59062138 + B1_Mus2 SINE Alu 1 111 -36 8 1352 232 269 0 13 chr3 100538038 100538117 -59061666 + (TTTA)n Simple_repeat Simple_repeat 3 80 0 8 1352 205 254 43 29 chr3 100538118 100538187 -59061596 - L2a LINE L2 0 3426 3357 8 1352 366 264 104 18 chr3 100538671 100538808 -59060975 + MIRb SINE MIR 77 219 -49 8 1352 1050 221 40 0 chr3 100540983 100541182 -59058601 - B3 SINE B2 -9 207 1 8 1352 467 227 41 22 chr3 100542416 100542636 -59057147 - 7SK RNA RNA -69 262 1 8 1352 748 207 7 0 chr3 100543292 100543427 -59056356 - B1_Mur1 SINE Alu -9 140 5 8 1352 263 342 60 4 chr3 100543466 100543698 -59056085 - L1M5 LINE L1 -1572 4574 4330 8 1352 1991 127 14 58 chr3 100543793 100544137 -59055646 + ORR1A4 LTR MaLR 1 329 0 9 1352 621 115 0 0 chr3 100544178 100544274 -59055509 + (TG)n Simple_repeat Simple_repeat 2 97 0 9 1352 602 266 112 36 chr3 100544274 100544524 -59055259 - B4A SINE B4 -4 288 20 9 1352 785 168 41 20 chr3 100544588 100544734 -59055049 + B1_Mur2 SINE Alu 1 149 0 9 1352 1401 70 0 0 chr3 100544954 100545425 -59054358 + (GAA)n Simple_repeat Simple_repeat 1 471 0 9 1352 216 0 0 0 chr3 100545476 100545500 -59054283 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 9 1352 931 57 0 0 chr3 100545500 100545622 -59054161 - B1_Mus1 SINE Alu -9 139 18 9 1352 209 33 33 0 chr3 100545911 100545941 -59053842 + (TTCC)n Simple_repeat Simple_repeat 3 33 0 9 1352 1571 165 93 73 chr3 100545956 100546282 -59053501 + RMER10B LTR ERVL 3 347 -51 9 1352 1405 82 22 0 chr3 100546282 100546465 -59053318 + B2_Mm2 SINE B2 1 187 -8 9 1352 1571 165 93 73 chr3 100546465 100546523 -59053260 + RMER10B LTR ERVL 348 395 -3 9 1352 887 50 0 0 chr3 100547139 100547259 -59052524 - B1_Mm SINE Alu 0 147 28 1 1352 180 0 0 0 chr3 100547266 100547286 -59052497 + (T)n Simple_repeat Simple_repeat 1 20 0 1 1352 602 231 38 77 chr3 100547431 100547666 -59052117 + RLTR12B LTR ERVK 46 271 -257 1 1352 465 19 0 0 chr3 100547666 100547720 -59052063 + (GA)n Simple_repeat Simple_repeat 1 54 0 1 1352 1769 123 26 84 chr3 100547764 100547859 -59051924 + ORR1A3 LTR MaLR 1 74 -252 1 1352 1228 133 109 178 chr3 100547859 100548094 -59051689 - RMER17C LTR ERVK -1 409 185 1 1352 1096 65 7 7 chr3 100548094 100548249 -59051534 + (GGAGA)n Simple_repeat Simple_repeat 5 159 0 1 1352 1228 133 109 178 chr3 100548249 100548452 -59051331 - RMER17C LTR ERVK -226 184 1 1 1352 1769 123 26 84 chr3 100548452 100548702 -59051081 + ORR1A3 LTR MaLR 75 326 0 1 1352 323 266 47 37 chr3 100548702 100548898 -59050885 + RLTR12B LTR ERVK 312 501 -26 1 1352 342 263 100 42 chr3 100549651 100549908 -59049875 + ORR1D2 LTR MaLR 37 324 -55 1 1352 563 231 73 47 chr3 100550359 100550550 -59049233 + L1MC1 LINE L1 6065 6260 -73 1 1352 195 69 0 0 chr3 100550825 100550854 -59048929 + (C)n Simple_repeat Simple_repeat 1 29 0 1 1352 360 204 71 10 chr3 100551270 100551369 -59048414 - B1F1 SINE Alu -44 105 1 1 1352 471 35 0 0 chr3 100551817 100551874 -59047909 + (CA)n Simple_repeat Simple_repeat 2 58 0 1 1352 442 248 147 0 chr3 100552420 100552529 -59047254 + RSINE1 SINE B4 5 129 -36 1 1352 201 219 25 11 chr3 100552610 100552683 -59047100 - MIRm SINE MIR 0 268 196 1 1352 983 238 327 28 chr3 100553439 100554056 -59045727 + MTC-int LTR MaLR 123 924 -334 1 1352 782 189 20 27 chr3 100554060 100554207 -59045576 - B1_Mur2 SINE Alu -2 147 2 1 1352 317 180 86 43 chr3 100554235 100554328 -59045455 - HAL1-3A_ME LINE L1 -787 2071 1975 1 1352 1028 260 70 61 chr3 100554343 100554828 -59044955 - MT2B LTR ERVL -52 549 1 1 1352 396 278 79 0 chr3 100555106 100555232 -59044551 + MTE2a LTR MaLR 1 136 -243 1 1352 940 313 3 19 chr3 100555171 100555533 -59044250 + MT2A LTR ERVL 76 431 -102 1 1352 233 213 0 0 chr3 100555531 100555578 -59044205 + MT2A LTR ERVL 343 389 -144 1 1352 301 260 65 0 chr3 100555601 100555678 -59044105 + ID4_ SINE ID 2 83 0 1 1352 394 228 188 56 chr3 100555690 100555834 -59043949 + B3A SINE B2 2 164 -34 1 1352 243 79 0 0 chr3 100555862 100555900 -59043883 + (TCTCTG)n Simple_repeat Simple_repeat 3 40 0 1 1352 186 43 0 0 chr3 100555900 100555922 -59043861 + (CA)n Simple_repeat Simple_repeat 1 23 0 1 1352 1277 72 77 6 chr3 100556008 100556189 -59043594 + B2_Mm2 SINE B2 2 195 0 1 1352 2243 176 14 65 chr3 100556890 100557334 -59042449 - MTC LTR MaLR 0 421 1 1 1352 1204 61 0 0 chr3 100557444 100557591 -59042192 + B1_Mm SINE Alu 1 147 0 1 1352 441 129 0 0 chr3 100557591 100557661 -59042122 + (A)n Simple_repeat Simple_repeat 1 70 0 1 1352 21 0 0 0 chr3 100557661 100557682 -59042101 + AT_rich Low_complexity Low_complexity 1 21 0 1 1352 6809 57 1 1 chr3 100557689 100558529 -59041254 - L1Md_F2 LINE L1 0 6582 5743 1 1352 942 211 217 49 chr3 100558547 100559036 -59040747 - RMER4B LTR ERVK -14 571 1 1 1352 824 138 29 0 chr3 100559351 100559489 -59040294 - B1_Mur2 SINE Alu -1 148 7 1 1352 260 216 65 102 chr3 100559395 100559503 -59040280 - MT2B LTR ERVL -344 257 154 1 1352 353 217 0 21 chr3 100560542 100560636 -59039147 + (CATATA)n Simple_repeat Simple_repeat 2 93 0 1 1352 405 0 0 0 chr3 100561478 100561523 -59038260 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 1352 1685 165 77 74 chr3 100561580 100561730 -59038053 + ORR1B2 LTR MaLR 1 162 -205 1 1352 342 0 0 0 chr3 100561730 100561768 -59038015 + (TC)n Simple_repeat Simple_repeat 2 39 0 1 1352 387 0 0 0 chr3 100561768 100561810 -59037973 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 1352 1685 165 77 74 chr3 100561810 100562024 -59037759 + ORR1B2 LTR MaLR 163 366 -1 1 1352 747 249 154 65 chr3 100562241 100562520 -59037263 - MTD LTR MaLR -12 407 104 1 1352 478 286 95 39 chr3 100562560 100562844 -59036939 - MLT1D LTR MaLR -190 315 16 1 1352 594 286 136 17 chr3 100565793 100566128 -59033655 + MTD LTR MaLR 9 401 -18 1 1352 561 221 103 7 chr3 100566345 100566373 -59033410 - B3A SINE B2 0 198 167 1 1352 3509 25 2 0 chr3 100566373 100566768 -59033015 + MTA_Mm LTR MaLR 1 396 0 1 1352 561 225 127 11 chr3 100566768 100566914 -59032869 - B3A SINE B2 -39 177 8 1 1352 29 0 0 0 chr3 100567206 100567235 -59032548 + AT_rich Low_complexity Low_complexity 1 29 0 1 1352 955 256 5 19 chr3 100567269 100567484 -59032299 - B3 SINE B2 -3 213 2 1 1352 269 183 17 0 chr3 100567517 100567577 -59032206 + GA-rich Low_complexity Low_complexity 1 61 0 1 1352 685 234 22 0 chr3 100567577 100567714 -59032069 - B1_Mur1 SINE Alu -9 140 1 1 1352 380 271 75 109 chr3 100567726 100567809 -59031974 - B3 SINE B2 -3 213 126 1 1352 1126 70 0 20 chr3 100567809 100567947 -59031836 + B1_Mus1 SINE Alu 2 139 -9 1 1352 266 0 29 0 chr3 100567947 100567981 -59031802 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1 1352 1163 64 0 6 chr3 100567988 100568146 -59031637 + (GAA)n Simple_repeat Simple_repeat 2 158 0 1 1352 380 271 75 109 chr3 100568146 100568235 -59031548 - B3 SINE B2 -91 125 47 1 1352 417 317 102 40 chr3 100568513 100568838 -59030945 - L1MA5 LINE L1 -17 6283 5939 1 1352 279 223 9 130 chr3 100568872 100568970 -59030813 - B3A SINE B2 0 198 111 1 1352 1066 188 62 5 chr3 100568970 100569179 -59030604 + URR1B DNA MER1_type 5 225 0 1 1352 391 194 64 18 chr3 100569229 100569339 -59030444 - L1MA5 LINE L1 -451 5849 5735 1 1352 216 356 28 46 chr3 100569423 100569456 -59030327 - MIR SINE MIR -148 114 83 1 1352 695 160 288 11 chr3 100569456 100569633 -59030150 + URR1A DNA MER1_type 1 226 0 1 1352 216 356 28 46 chr3 100569633 100569708 -59030075 - MIR SINE MIR -180 82 8 1 1352 378 0 0 0 chr3 100571088 100571130 -59028653 + (CA)n Simple_repeat Simple_repeat 2 43 0 1 1352 329 278 62 8 chr3 100571165 100571314 -59028469 - Lx8 LINE L1 -1579 5894 5705 1 1352 1143 115 183 0 chr3 100571389 100571580 -59028203 - URR1A DNA MER1_type 0 226 1 1 1352 180 0 0 0 chr3 100572507 100572527 -59027256 + (CG)n Simple_repeat Simple_repeat 2 21 0 1 1352 396 0 0 0 chr3 100572527 100572570 -59027213 + (CA)n Simple_repeat Simple_repeat 1 44 0 1 1352 323 73 18 0 chr3 100572710 100572765 -59027018 + (CAAA)n Simple_repeat Simple_repeat 2 57 0 1 1352 305 198 12 0 chr3 100572785 100572871 -59026912 + (TG)n Simple_repeat Simple_repeat 2 88 0 1 1352 191 36 36 0 chr3 100572956 100572984 -59026799 + (GA)n Simple_repeat Simple_repeat 1 29 0 1 1352 723 83 0 0 chr3 100573044 100573152 -59026631 + (TC)n Simple_repeat Simple_repeat 1 108 0 1 1352 198 0 0 0 chr3 100573152 100573173 -59026610 + (CA)n Simple_repeat Simple_repeat 1 22 0 1 1352 336 231 25 25 chr3 100573779 100573859 -59025924 - ID4 SINE ID -2 81 2 1 1352 244 80 20 0 chr3 100574161 100574211 -59025572 + B3 SINE B2 166 216 0 1 1352 973 269 137 23 chr3 100575636 100576052 -59023731 + MLT2B1 LTR ERVL 1 465 -55 1 1352 1355 151 0 28 chr3 100576052 100576264 -59023519 + B3 SINE B2 1 206 -10 1 1352 973 269 137 23 chr3 100576264 100576277 -59023506 + MLT2B1 LTR ERVL 466 478 -42 1 1352 24 32 0 0 chr3 100576277 100576308 -59023475 + AT_rich Low_complexity Low_complexity 1 31 0 1 1352 240 86 0 0 chr3 100576321 100576356 -59023427 + (TTTC)n Simple_repeat Simple_repeat 2 36 0 1 1352 1236 54 0 0 chr3 100576357 100576504 -59023279 - B1_Mus2 SINE Alu 0 147 1 1 1352 296 262 84 101 chr3 100577484 100577662 -59022121 - MER67C LTR ERV1 -44 667 493 1 1352 600 301 27 18 chr3 100578950 100579170 -59020613 - MIRb SINE MIR -10 258 37 1 1352 445 247 0 27 chr3 100579294 100579477 -59020306 + (TG)n Simple_repeat Simple_repeat 1 178 0 1 1352 249 176 0 66 chr3 100579534 100579625 -59020158 + (TATATG)n Simple_repeat Simple_repeat 2 86 0 1 1352 494 250 0 0 chr3 100579912 100580016 -59019767 - RSINE1 SINE B4 -59 106 3 1 1352 478 297 23 0 chr3 100580032 100580160 -59019623 - B1F SINE Alu -17 132 2 1 1352 22 0 0 0 chr3 100580836 100580858 -59018925 + AT_rich Low_complexity Low_complexity 1 22 0 1 1352 1041 72 0 0 chr3 100582079 100582218 -59017565 + (TTTC)n Simple_repeat Simple_repeat 2 140 0 1 1352 216 0 0 0 chr3 100582223 100582247 -59017536 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1 1352 309 254 30 0 chr3 100582536 100582603 -59017180 + B4 SINE B4 2 70 -222 1 1352 830 191 98 5 chr3 100582603 100582795 -59016988 - MTD LTR MaLR 0 419 208 1 1352 195 42 0 0 chr3 100582795 100582819 -59016964 + (CCTG)n Simple_repeat Simple_repeat 2 25 0 1 1352 830 191 98 5 chr3 100582819 100582831 -59016952 - MTD LTR MaLR -212 207 196 1 1352 507 133 29 0 chr3 100582833 100582938 -59016845 + CT-rich Low_complexity Low_complexity 4 111 0 1 1352 628 192 0 71 chr3 100582939 100583079 -59016704 - B1_Mur3 SINE Alu -1 148 19 1 1352 707 224 88 59 chr3 100583090 100583294 -59016489 - MTD LTR MaLR -209 210 1 1 1352 555 294 92 14 chr3 100583294 100583501 -59016282 + B4 SINE B4 66 288 -4 1 1352 242 294 46 38 chr3 100583660 100583791 -59015992 + MER5A1 DNA MER1_type 21 152 -14 1 1352 263 308 127 8 chr3 100585525 100585643 -59014140 + ORR1E LTR MaLR 5 136 -223 1 1352 368 343 51 87 chr3 100585686 100586056 -59013727 - ORR1E LTR MaLR 0 359 3 1 1352 200 366 0 27 chr3 100586652 100586725 -59013058 + (CACG)n Simple_repeat Simple_repeat 1 71 0 1 1352 217 307 89 73 chr3 100586950 100587073 -59012710 + MIRb SINE MIR 25 152 -116 1 1352 307 326 61 15 chr3 100587448 100587644 -59012139 - L1MC4a LINE L1 -1941 5941 5737 1 1352 1825 171 99 0 chr3 100587887 100588220 -59011563 + ORR1B2 LTR MaLR 1 366 -1 1 1352 244 357 21 47 chr3 100588503 100588694 -59011089 - L1MC4a LINE L1 -1166 4980 4795 1 1352 563 269 15 15 chr3 100588790 100588926 -59010857 + B1_Mur2 SINE Alu 1 136 -13 1 1352 563 295 96 14 chr3 100589170 100589264 -59010519 - RLTR20A2 LTR ERVK 0 568 477 1 1352 318 106 0 0 chr3 100589264 100589311 -59010472 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 1352 871 251 75 16 chr3 100589311 100589667 -59010116 - RLTR20A2 LTR ERVK -92 476 1 1 1352 2291 125 102 12 chr3 100589802 100590423 -59009360 + RMER19A LTR ERVK 1 737 0 1 1352 879 146 13 18 chr3 100590444 100590669 -59009114 + GA-rich Low_complexity Low_complexity 1 223 0 1 1352 385 299 88 0 chr3 100590670 100590817 -59008966 + B3A SINE B2 1 160 -38 1 1352 452 314 22 7 chr3 100590846 100590984 -59008799 + B1F SINE Alu 4 143 -6 2 1352 826 122 33 104 chr3 100592087 100592270 -59007513 + ORR1A3 LTR MaLR 1 170 -156 2 1352 4267 159 80 55 chr3 100592270 100593107 -59006676 - MERVL-int LTR ERVL -4627 858 1 2 1352 2324 106 16 0 chr3 100593107 100593428 -59006355 - ORR1A3 LTR MaLR 0 326 1 2 1352 510 286 109 6 chr3 100594855 100595038 -59004745 + RMER21A LTR ERV1 483 684 -263 2 1352 276 235 0 56 chr3 100595054 100595126 -59004657 + RMER21A LTR ERV1 651 718 -124 2 1352 378 0 0 0 chr3 100595271 100595313 -59004470 + (TTGG)n Simple_repeat Simple_repeat 2 43 0 2 1352 1058 136 136 5 chr3 100595318 100595532 -59004251 + MTD LTR MaLR 174 415 -4 2 1352 326 331 26 40 chr3 100596306 100596457 -59003326 - L2c LINE L2 -2 3385 3237 2 1352 3536 218 79 80 chr3 100597455 100598349 -59001434 + RMER1B Other Other 60 955 -111 2 1352 419 0 20 0 chr3 100598349 100598400 -59001383 + (TTTTG)n Simple_repeat Simple_repeat 5 56 0 2 1352 3536 218 79 80 chr3 100598400 100598513 -59001270 + RMER1B Other Other 956 1065 -1 2 1352 1238 117 153 0 chr3 100599913 100600109 -58999674 + URR1A DNA MER1_type 1 226 0 2 1352 355 216 0 13 chr3 100600125 100600200 -58999583 - HAL1-3A_ME LINE L1 -809 2049 1976 2 1352 270 315 0 11 chr3 100600200 100600290 -58999493 + (TG)n Simple_repeat Simple_repeat 1 89 0 2 1352 281 48 0 45 chr3 100600296 100600340 -58999443 + (TATG)n Simple_repeat Simple_repeat 1 42 0 2 1352 1611 180 49 140 chr3 100601429 100601900 -58997883 + RLTR23 LTR ERV1 1 428 -2 2 1352 502 252 109 36 chr3 100603033 100603312 -58996471 + RMER20B LTR ERVK 234 590 -37 2 1352 1421 286 75 20 chr3 100603718 100604178 -58995605 + Lx8 LINE L1 6851 7330 -143 2 1352 282 95 0 0 chr3 100604178 100604220 -58995563 + (TG)n Simple_repeat Simple_repeat 2 43 0 2 1352 1421 286 75 20 chr3 100604220 100604345 -58995438 + Lx8 LINE L1 7331 7468 -5 2 1352 534 223 6 103 chr3 100604546 100604721 -58995062 + L1_Rod LINE L1 3798 3955 -1892 2 1352 7270 44 1 1 chr3 100604723 100605592 -58994191 + L1Md_F2 LINE L1 5712 6580 -2 2 1352 785 316 19 13 chr3 100605595 100605970 -58993813 + L1_Mur3 LINE L1 4287 4663 -1217 2 1352 8189 76 13 13 chr3 100606044 100607886 -58991897 - L1VL2 LINE L1 -1574 2041 205 2 1352 423 196 11 32 chr3 100609029 100609124 -58990659 - RMER17C LTR ERVK 0 410 318 2 1352 207 69 0 0 chr3 100609468 100609497 -58990286 + (TGGGGG)n Simple_repeat Simple_repeat 2 30 0 2 1352 340 152 72 15 chr3 100610313 100610394 -58989389 + B2_Mm2 SINE B2 1 79 -119 2 1352 307 295 0 0 chr3 100610740 100610818 -58988965 + ID2 SINE ID 3 80 -3 2 1352 1381 84 16 5 chr3 100610829 100611021 -58988762 + B2_Mm2 SINE B2 2 195 0 2 1352 983 42 8 0 chr3 100611060 100611178 -58988605 - L1Md_F2 LINE L1 -726 5856 5738 2 1352 5762 55 0 0 chr3 100611178 100611883 -58987900 + L1Md_F2 LINE L1 5878 6582 0 2 1352 978 291 68 0 chr3 100612015 100612280 -58987503 - B4A SINE B4 -7 285 3 2 1352 531 344 110 28 chr3 100612582 100612872 -58986911 - LTR16A LTR ERVL -137 314 1 2 1352 203 289 123 62 chr3 100613159 100613321 -58986462 - L2b LINE L2 -189 3186 3015 2 1352 530 280 107 20 chr3 100613625 100613822 -58985961 + B4A SINE B4 2 215 -77 2 1352 693 167 0 20 chr3 100613833 100613986 -58985797 + (TA)n Simple_repeat Simple_repeat 2 151 0 2 1352 267 281 0 0 chr3 100613988 100614045 -58985738 + B4A SINE B4 232 288 -4 2 1352 236 229 94 44 chr3 100614141 100614263 -58985520 - MIR3 SINE MIR -50 158 39 2 1352 228 220 0 39 chr3 100614963 100615015 -58984768 - HAL1 LINE L1 -223 2284 2235 2 1352 450 246 7 18 chr3 100615015 100615143 -58984640 - PB1D10 SINE Alu -17 132 9 2 1352 291 308 184 30 chr3 100615130 100615331 -58984452 - Charlie13b DNA Charlie -61 451 220 2 1352 298 333 12 0 chr3 100615442 100615526 -58984257 - MTEa LTR MaLR -14 365 281 2 1352 410 237 109 42 chr3 100615751 100615870 -58983913 - MLT1A1 LTR MaLR -279 129 3 2 1352 567 155 29 67 chr3 100615868 100615972 -58983811 + B3A SINE B2 1 100 -98 2 1352 393 22 0 0 chr3 100615982 100616028 -58983755 + (CA)n Simple_repeat Simple_repeat 1 46 0 2 1352 396 304 115 31 chr3 100616135 100616408 -58983375 - MT2A LTR ERVL 0 533 199 2 1352 332 296 111 0 chr3 100616624 100616732 -58983051 + ID_B1 SINE B4 92 211 -13 2 1352 278 316 26 0 chr3 100616774 100616850 -58982933 + ID4 SINE ID 2 79 -4 2 1352 250 259 82 0 chr3 100617404 100617489 -58982294 + MIR SINE MIR 112 203 -59 2 1352 339 25 0 0 chr3 100617928 100617968 -58981815 + (TC)n Simple_repeat Simple_repeat 2 41 0 2 1352 1566 156 166 0 chr3 100617976 100618284 -58981499 + ORR1B2 LTR MaLR 1 359 -8 2 1352 580 194 77 8 chr3 100618288 100618418 -58981365 - RMER1C Other Other -3 1339 1201 2 1352 664 219 6 6 chr3 100618452 100618622 -58981161 + GA-rich Low_complexity Low_complexity 2 171 0 2 1352 2336 78 0 72 chr3 100619620 100619965 -58979818 + ORR1A2 LTR MaLR 8 327 0 2 1352 1099 158 122 0 chr3 100620050 100620246 -58979537 - URR1A DNA MER1_type -6 220 1 2 1352 236 246 43 0 chr3 100620548 100620617 -58979166 - MLT1I LTR MaLR -13 398 327 2 1352 361 272 149 39 chr3 100620908 100621135 -58978648 - MLT1A LTR MaLR -7 460 116 2 1352 313 355 0 41 chr3 100621177 100621324 -58978459 + BC1_Mm scRNA scRNA 5 145 -7 2 1352 438 299 63 106 chr3 100621319 100621622 -58978161 + MLT1B LTR MaLR 21 310 -80 2 1352 269 291 0 37 chr3 100622027 100622109 -58977674 - ID2 SINE ID -3 80 2 2 1352 252 0 0 0 chr3 100622138 100622166 -58977617 + (CA)n Simple_repeat Simple_repeat 2 29 0 2 1352 574 246 15 40 chr3 100622270 100622469 -58977314 + L1MA5 LINE L1 6106 6299 -1 2 1352 1425 213 94 9 chr3 100622522 100622863 -58976920 - ORR1D2 LTR MaLR 0 370 1 2 1352 330 316 40 153 chr3 100622981 100623328 -58976455 + ORR1E LTR MaLR 1 308 -51 2 1352 305 289 111 82 chr3 100623661 100623868 -58975915 - MLT1H2 LTR MaLR 0 489 277 2 1352 1009 111 74 17 chr3 100624142 100624317 -58975466 + B2_Mm2 SINE B2 10 194 -1 2 1352 190 265 61 0 chr3 100624400 100624449 -58975334 + MIRc SINE MIR 91 142 -126 2 1352 309 339 50 57 chr3 100625088 100625249 -58974534 - L2c LINE L2 -5 3382 3201 2 1352 311 258 128 29 chr3 100625493 100625665 -58974118 - B2_Mm2 SINE B2 -6 189 1 2 1352 441 95 0 0 chr3 100625677 100625740 -58974043 + (TG)n Simple_repeat Simple_repeat 1 63 0 2 1352 329 310 52 89 chr3 100625760 100625951 -58973832 - B4A SINE B4 -107 185 2 2 1352 38 39 0 0 chr3 100625953 100626005 -58973778 + AT_rich Low_complexity Low_complexity 1 52 0 2 1352 633 343 123 9 chr3 100626099 100626322 -58973461 + MLT1B LTR MaLR 11 261 -129 2 1352 240 35 0 0 chr3 100626322 100626351 -58973432 + (GA)n Simple_repeat Simple_repeat 1 29 0 2 1352 633 343 123 9 chr3 100626351 100626468 -58973315 + MLT1B LTR MaLR 262 389 -1 2 1352 287 284 49 86 chr3 100626849 100627011 -58972772 + LTR48B LTR ERV1 489 644 0 2 1352 182 354 34 42 chr3 100627078 100627196 -58972587 - L2c LINE L2 -969 2450 2334 2 1352 318 67 0 0 chr3 100627401 100627446 -58972337 + (TCTG)n Simple_repeat Simple_repeat 4 48 0 2 1352 1142 153 113 0 chr3 100627995 100628198 -58971585 + URR1A DNA MER1_type 1 226 0 2 1352 443 284 66 33 chr3 100628037 100628219 -58971564 - CYRA11_Mm Unknown Y-chromosome -284 333 146 2 1352 523 181 23 108 chr3 100628481 100628611 -58971172 + B1F1 SINE Alu 24 142 -7 2 1352 603 102 0 0 chr3 100628613 100628701 -58971082 + (GGGA)n Simple_repeat Simple_repeat 2 89 0 2 1352 447 19 0 0 chr3 100629519 100629571 -58970212 + (TC)n Simple_repeat Simple_repeat 2 53 0 2 1352 234 91 0 0 chr3 100630219 100630252 -58969531 + (TGG)n Simple_repeat Simple_repeat 1 33 0 2 1352 270 343 42 42 chr3 100631782 100631925 -58967858 - L2c LINE L2 -228 3159 3017 2 1352 1683 213 88 5 chr3 100633788 100634165 -58965618 + MTD LTR MaLR 12 419 0 2 1352 642 294 24 66 chr3 100634165 100634376 -58965407 - B4A SINE B4 -85 207 6 2 1352 1446 64 27 0 chr3 100635372 100635559 -58964224 + B2_Mm2 SINE B2 2 193 -2 2 1352 1333 138 5 0 chr3 100635676 100635865 -58963918 + URR1B DNA MER1_type 7 196 -29 2 1352 257 247 12 38 chr3 100635821 100635901 -58963882 - B2_Mm2 SINE B2 -116 79 2 2 1352 262 281 186 7 chr3 100636236 100636376 -58963407 + MIR SINE MIR 33 197 -65 2 1352 306 231 157 0 chr3 100636674 100636782 -58963001 + MER5A DNA MER1_type 32 156 -33 2 1352 375 250 76 0 chr3 100637854 100637946 -58961837 + MIR SINE MIR 22 120 -142 2 1352 432 245 132 0 chr3 100638563 100638669 -58961114 + B1F SINE Alu 1 120 0 2 1352 248 311 75 9 chr3 100639723 100639830 -58959953 + MamRep1161 DNA TcMar 70 183 -774 2 1352 852 296 52 9 chr3 100639983 100640215 -58959568 + B4A SINE B4 1 242 -50 2 1352 452 280 18 18 chr3 100640444 100640553 -58959230 - MTEb LTR MaLR -11 368 260 2 1352 355 217 92 34 chr3 100640554 100640673 -58959110 - Lx9 LINE L1 -681 6963 6838 2 1352 805 203 142 79 chr3 100640673 100640940 -58958843 - MTEb LTR MaLR -95 284 1 2 1352 1885 284 104 9 chr3 100641077 100641710 -58958073 - Lx9 LINE L1 -594 7050 6358 2 1352 459 0 0 0 chr3 100641722 100641773 -58958010 + (TG)n Simple_repeat Simple_repeat 2 52 0 2 1352 1578 47 0 20 chr3 100642100 100642295 -58957488 - B2_Mm1a SINE B2 -1 192 2 2 1352 330 287 0 11 chr3 100642628 100642716 -58957067 - ORR1E LTR MaLR -270 89 3 2 1352 453 238 0 10 chr3 100643265 100643367 -58956416 - PB1D10 SINE Alu -16 101 1 2 1352 670 234 7 14 chr3 100643993 100644140 -58955643 + B1F2 SINE Alu 2 147 -2 2 1352 441 0 0 0 chr3 100644374 100644423 -58955360 + (TG)n Simple_repeat Simple_repeat 2 50 0 2 1352 576 188 0 0 chr3 100644425 100644563 -58955220 + (TA)n Simple_repeat Simple_repeat 2 139 0 2 1352 187 286 56 14 chr3 100645664 100645735 -58954048 - L3 LINE CR1 -2719 1770 1697 3 1352 348 83 0 0 chr3 100646157 100646205 -58953578 + (GA)n Simple_repeat Simple_repeat 1 48 0 3 1352 181 204 78 39 chr3 100646275 100646326 -58953457 - L3 LINE CR1 -3452 1037 985 3 1352 31 0 0 0 chr3 100646535 100646566 -58953217 + AT_rich Low_complexity Low_complexity 1 31 0 3 1352 186 250 0 0 chr3 100647657 100647697 -58952086 - MIRb SINE MIR -206 62 23 3 1352 279 157 0 0 chr3 100649066 100649117 -58950666 + (TG)n Simple_repeat Simple_repeat 2 52 0 3 1352 1055 257 131 13 chr3 100649123 100649505 -58950278 - L1MA9 LINE L1 -153 6159 5733 3 1352 421 318 8 0 chr3 100649513 100649645 -58950138 - L1MA9 LINE L1 -764 5548 5416 3 1352 425 180 108 43 chr3 100649645 100649738 -58950045 + PB1D10 SINE Alu 1 99 -50 3 1352 1670 132 119 14 chr3 100649743 100650036 -58949747 - ORR1A4 LTR MaLR 0 329 6 3 1352 580 284 71 16 chr3 100650170 100650478 -58949305 - L1MA9 LINE L1 -849 5291 4967 3 1352 394 278 65 0 chr3 100650540 100650648 -58949135 - L1MA9 LINE L1 -5830 237 123 3 1352 1636 42 0 0 chr3 100651205 100651397 -58948386 + B2_Mm1t SINE B2 2 193 0 3 1352 2114 133 9 0 chr3 100651401 100651717 -58948066 - ORR1A4 LTR MaLR -10 319 1 3 1352 300 318 73 27 chr3 100651806 100651916 -58947867 - B1F1 SINE Alu 0 149 35 3 1352 366 208 14 14 chr3 100652047 100652120 -58947663 - ID4 SINE ID -7 76 4 3 1352 576 77 0 0 chr3 100652188 100652266 -58947517 + (TTCC)n Simple_repeat Simple_repeat 2 79 0 3 1352 255 93 0 0 chr3 100652603 100652646 -58947137 + (TCTCTG)n Simple_repeat Simple_repeat 2 44 0 3 1352 324 377 70 31 chr3 100652809 100653036 -58946747 - LTR78 LTR ERV1 -1068 236 1 3 1352 216 0 0 0 chr3 100653066 100653090 -58946693 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 3 1352 23 54 0 0 chr3 100653394 100653431 -58946352 + AT_rich Low_complexity Low_complexity 1 37 0 3 1352 391 125 28 19 chr3 100653496 100653602 -58946181 + (CA)n Simple_repeat Simple_repeat 2 108 0 3 1352 453 275 9 27 chr3 100653602 100653714 -58946069 - B3A SINE B2 -88 110 1 3 1352 322 21 43 0 chr3 100654951 100654998 -58944785 + (CCCCCT)n Simple_repeat Simple_repeat 3 51 0 3 1352 2142 142 110 5 chr3 100655079 100655460 -58944323 - MTC LTR MaLR 0 421 1 3 1352 557 174 19 77 chr3 100655711 100655867 -58943916 + Lx2B LINE L1 6853 6999 -1 3 1352 202 169 44 11 chr3 100655901 100655991 -58943792 + (TA)n Simple_repeat Simple_repeat 2 94 0 3 1352 515 354 101 52 chr3 100656484 100657000 -58942783 - L1MEg LINE L1 -4734 1491 951 3 1352 801 139 7 68 chr3 100657008 100657019 -58942764 - B1_Mus1 SINE Alu 0 148 139 3 1352 189 0 0 0 chr3 100657019 100657040 -58942743 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 3 1352 801 139 7 68 chr3 100657040 100657175 -58942608 - B1_Mus1 SINE Alu -10 138 11 3 1352 217 96 37 37 chr3 100657188 100657242 -58942541 + (TTTG)n Simple_repeat Simple_repeat 1 54 0 3 1352 399 315 83 36 chr3 100657314 100657591 -58942192 - L1MEg LINE L1 -5269 850 561 3 1352 681 236 48 62 chr3 100657865 100658073 -58941710 - B3 SINE B2 -11 205 1 3 1352 841 108 67 0 chr3 100659595 100659715 -58940068 + B3 SINE B2 2 129 -87 3 1352 189 0 0 0 chr3 100659736 100659757 -58940026 + (A)n Simple_repeat Simple_repeat 1 21 0 3 1352 407 270 57 97 chr3 100662256 100662432 -58937351 + MER20 DNA MER1_type 46 214 -5 3 1353 377 323 11 101 chr3 100663342 100663521 -58936262 - MER2 DNA MER2_type -39 306 144 3 1353 307 348 88 62 chr3 100664004 100664197 -58935586 + MIRb SINE MIR 26 223 -45 3 1353 794 272 133 20 chr3 100664232 100664623 -58935160 + L1MA5A LINE L1 5501 5935 -362 3 1353 282 29 0 0 chr3 100664624 100664659 -58935124 + (TG)n Simple_repeat Simple_repeat 2 36 0 3 1353 1108 301 37 9 chr3 100664831 100665156 -58934627 - MTE2b LTR MaLR -40 339 6 3 1353 453 299 80 20 chr3 100665768 100665918 -58933865 + Tigger9a DNA Tigger 572 730 -2 3 1353 315 0 0 0 chr3 100666340 100666375 -58933408 + (TG)n Simple_repeat Simple_repeat 2 36 0 3 1353 717 188 34 27 chr3 100666909 100667057 -58932726 + B1_Mur4 SINE Alu 1 149 -1 3 1353 957 191 113 0 chr3 100667198 100667392 -58932391 - B3 SINE B2 0 216 1 3 1353 1931 139 108 32 chr3 100668130 100668508 -58931275 - MTB_Mm LTR MaLR 0 407 1 3 1353 252 0 0 0 chr3 100668692 100668720 -58931063 + (CAGA)n Simple_repeat Simple_repeat 3 30 0 3 1353 3256 53 8 2 chr3 100668822 100669220 -58930563 + MTB LTR MaLR 1 400 0 3 1353 1072 267 123 14 chr3 100669254 100669603 -58930180 - MTD LTR MaLR -15 404 18 3 1353 482 285 100 40 chr3 100669713 100669914 -58929869 + B3A SINE B2 2 216 0 3 1353 295 288 27 58 chr3 100670050 100670215 -58929568 - MLT1C LTR MaLR -2 465 225 3 1353 429 20 0 0 chr3 100670269 100670319 -58929464 + (TG)n Simple_repeat Simple_repeat 2 51 0 3 1353 305 346 19 19 chr3 100670351 100670457 -58929326 - PB1 SINE Alu -7 120 15 3 1353 348 192 260 0 chr3 100670471 100670575 -58929208 - MLT1C LTR MaLR -283 184 54 3 1353 1324 142 0 22 chr3 100671280 100671504 -58928279 - URR1B DNA MER1_type 0 225 7 3 1353 4593 108 191 4 chr3 100671505 100672311 -58927472 - RMER17B LTR ERVK 0 958 2 3 1353 203 248 201 3 chr3 100672400 100672488 -58927295 + MIRm SINE MIR 22 122 -140 3 1353 565 128 20 0 chr3 100672776 100672878 -58926905 + (TA)n Simple_repeat Simple_repeat 2 105 0 3 1353 325 195 152 0 chr3 100672939 100673034 -58926749 - Lx7 LINE L1 -4 7692 7610 3 1353 927 235 78 84 chr3 100673052 100673373 -58926410 - Lx7 LINE L1 -283 7413 7095 3 1353 1480 218 129 26 chr3 100673372 100673901 -58925882 - L1_Mur3 LINE L1 -2592 3285 2592 3 1353 923 167 78 8 chr3 100673912 100674154 -58925629 + L1_Mur3 LINE L1 3032 3290 -2590 3 1353 304 207 24 0 chr3 100674173 100674255 -58925528 - L1_Mur3 LINE L1 -3346 2534 2451 3 1353 3005 176 45 5 chr3 100674269 100674867 -58924916 - ORR1C1-int LTR MaLR -887 622 1 3 1353 384 106 0 15 chr3 100674869 100674936 -58924847 - ORR1C1 LTR MaLR -2 376 311 3 1353 1028 162 11 0 chr3 100674928 100675113 -58924670 - ORR1C1 LTR MaLR -191 187 1 3 1353 5004 195 35 56 chr3 100675113 100675669 -58924114 - L1_Mur3 LINE L1 -3432 2448 1897 3 1353 1144 64 7 0 chr3 100675669 100675809 -58923974 + B1_Mus2 SINE Alu 1 141 -6 3 1353 5004 195 35 56 chr3 100675809 100675822 -58923961 - L1_Mur3 LINE L1 -3984 1896 1896 3 1353 607 88 18 0 chr3 100675822 100675935 -58923848 + (TA)n Simple_repeat Simple_repeat 1 115 0 3 1353 5004 230 30 43 chr3 100675935 100676990 -58922793 - L1_Mur3 LINE L1 -3984 1896 843 3 1353 213 65 0 0 chr3 100677122 100677153 -58922630 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 3 1353 1029 82 7 0 chr3 100677153 100677288 -58922495 - B1_Mus1 SINE Alu -11 137 2 3 1353 283 327 35 35 chr3 100677397 100677571 -58922212 - L1_Mur3 LINE L1 -6919 809 636 3 1353 771 92 0 0 chr3 100678002 100678111 -58921672 + (TTTC)n Simple_repeat Simple_repeat 2 110 0 3 1353 3398 44 2 0 chr3 100678121 100678527 -58921256 - L1_Mus1 LINE L1 -2 6565 6159 3 1353 431 279 53 15 chr3 100679433 100679616 -58920167 - B3A SINE B2 0 216 27 3 1353 7541 47 1 13 chr3 100679642 100680560 -58919223 - L1_Mus1 LINE L1 0 6567 5661 3 1353 722 278 151 22 chr3 100680660 100680778 -58919005 - L1M5 LINE L1 -926 5220 5085 3 1353 195 42 0 0 chr3 100680778 100680802 -58918981 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 3 1353 722 278 151 22 chr3 100680802 100681054 -58918729 - L1M5 LINE L1 -1062 5084 4802 3 1353 334 259 72 27 chr3 100681060 100681171 -58918612 - Tigger5 DNA MER2_type 0 2406 2291 3 1353 453 289 16 0 chr3 100681242 100681363 -58918420 - Tigger5 DNA MER2_type -2278 128 6 3 1353 1111 82 0 7 chr3 100682005 100682152 -58917631 + B1_Mus2 SINE Alu 2 147 0 3 1353 24 0 0 0 chr3 100682231 100682255 -58917528 + AT_rich Low_complexity Low_complexity 1 24 0 3 1353 355 303 0 0 chr3 100682259 100682335 -58917448 - ID4 SINE ID -6 77 2 3 1353 243 312 69 42 chr3 100682424 100682568 -58917215 + MIRc SINE MIR 19 169 -99 3 1353 216 288 11 26 chr3 100682807 100682898 -58916885 - MIRc SINE MIR -157 111 21 3 1353 479 267 70 41 chr3 100683433 100683605 -58916178 + MTD LTR MaLR 18 196 -204 3 1353 785 234 72 34 chr3 100683605 100683813 -58915970 + B3 SINE B2 1 216 0 3 1353 1248 158 18 14 chr3 100683880 100684099 -58915684 + URR1B DNA MER1_type 1 220 -5 3 1353 1516 68 16 0 chr3 100684099 100684291 -58915492 + B2_Mm2 SINE B2 1 195 0 3 1353 526 262 28 0 chr3 100684310 100684455 -58915328 + MTD LTR MaLR 241 389 -30 3 1353 265 373 79 0 chr3 100687260 100687415 -58912368 - MIRc SINE MIR -63 205 28 3 1353 252 0 0 0 chr3 100688175 100688203 -58911580 + (CCCCCT)n Simple_repeat Simple_repeat 5 32 0 3 1353 499 238 81 8 chr3 100688262 100688385 -58911398 - B1_Mur1 SINE Alu -17 132 1 3 1353 183 211 26 0 chr3 100689018 100689056 -58910727 + MIRc SINE MIR 113 151 -117 3 1353 594 304 104 45 chr3 100689435 100689810 -58909973 + L1MD3 LINE L1 7574 7970 -25 3 1353 21 36 0 0 chr3 100689828 100689856 -58909927 + AT_rich Low_complexity Low_complexity 1 28 0 3 1353 913 156 178 0 chr3 100689873 100690053 -58909730 + B3 SINE B2 5 216 0 3 1353 374 290 32 0 chr3 100690309 100690433 -58909350 + ID_B1 SINE B4 95 222 -2 3 1353 394 311 23 90 chr3 100690537 100690624 -58909159 + RSINE1 SINE B4 1 78 -87 3 1353 1080 203 63 225 chr3 100690624 100691082 -58908701 - ORR1C2 LTR MaLR 0 384 1 3 1353 394 311 23 90 chr3 100691082 100691171 -58908612 + RSINE1 SINE B4 79 165 0 3 1353 262 250 28 0 chr3 100691171 100691243 -58908540 + (CAT)n Simple_repeat Simple_repeat 2 75 0 3 1353 390 91 0 0 chr3 100691572 100691627 -58908156 + (TCC)n Simple_repeat Simple_repeat 3 57 0 3 1353 805 135 120 0 chr3 100691862 100691995 -58907788 + B1_Mur4 SINE Alu 1 149 -1 3 1353 1140 174 27 14 chr3 100692572 100692794 -58906989 + URR1A DNA MER1_type 2 226 0 3 1353 775 185 46 0 chr3 100692895 100693025 -58906758 + B1_Mur1 SINE Alu 1 136 -13 3 1353 207 0 0 0 chr3 100693597 100693620 -58906163 + (TG)n Simple_repeat Simple_repeat 2 24 0 3 1353 22 0 0 0 chr3 100693714 100693736 -58906047 + AT_rich Low_complexity Low_complexity 1 22 0 3 1353 426 224 28 9 chr3 100693737 100693845 -58905938 + L1M3 LINE L1 5192 5301 -839 3 1353 246 273 0 61 chr3 100693867 100693949 -58905834 - ID4 SINE ID -4 79 3 3 1353 440 353 60 35 chr3 100694043 100694325 -58905458 - B4A SINE B4 0 292 4 3 1353 723 301 85 52 chr3 100694336 100694760 -58905023 + L1M3 LINE L1 5320 5757 -414 3 1353 2114 141 11 14 chr3 100694808 100695168 -58904615 + RLTR15 LTR ERVK 1 359 0 3 1353 219 167 71 0 chr3 100695879 100695921 -58903862 - MIR SINE MIR -6 256 212 3 1353 1102 243 5 0 chr3 100697365 100697579 -58902204 - B3 SINE B2 0 216 2 4 1353 494 72 0 24 chr3 100697619 100697704 -58902079 + (TCTCTG)n Simple_repeat Simple_repeat 2 84 0 4 1353 1255 102 11 0 chr3 100698439 100698615 -58901168 + B2_Mm1t SINE B2 2 179 -14 4 1353 306 304 13 0 chr3 100700561 100700640 -58899143 - ID4 SINE ID -2 81 2 4 1353 501 17 0 0 chr3 100701162 100701220 -58898563 + (TG)n Simple_repeat Simple_repeat 2 59 0 4 1353 718 153 24 0 chr3 100701220 100701344 -58898439 - B1_Mur1 SINE Alu -13 136 10 4 1353 892 265 5 0 chr3 100702447 100702643 -58897140 + B3 SINE B2 1 197 -19 4 1353 31 0 0 0 chr3 100702649 100702680 -58897103 + AT_rich Low_complexity Low_complexity 1 31 0 4 1353 435 267 86 13 chr3 100702683 100702835 -58896948 + RSINE1 SINE B4 3 165 0 4 1353 833 183 0 17 chr3 100702928 100703106 -58896677 + CT-rich Low_complexity Low_complexity 3 177 0 4 1353 405 0 0 0 chr3 100703313 100703358 -58896425 + (CA)n Simple_repeat Simple_repeat 2 46 0 4 1353 674 250 8 0 chr3 100703923 100704055 -58895728 - RSINE1 SINE B4 -31 134 2 4 1353 521 218 170 28 chr3 100704086 100704281 -58895502 + B3A SINE B2 1 203 -13 4 1353 434 223 15 0 chr3 100704282 100704412 -58895371 + (CATA)n Simple_repeat Simple_repeat 3 134 0 4 1353 26 0 0 0 chr3 100704412 100704438 -58895345 + AT_rich Low_complexity Low_complexity 1 26 0 4 1353 312 70 0 0 chr3 100705493 100705536 -58894247 + (CCA)n Simple_repeat Simple_repeat 1 43 0 4 1353 289 209 141 19 chr3 100705908 100706045 -58893738 + L1MA5 LINE L1 5740 5937 -363 4 1353 715 228 46 56 chr3 100706217 100706412 -58893371 - B3A SINE B2 -1 197 5 4 1353 637 207 21 0 chr3 100706490 100706630 -58893153 - B1_Mur4 SINE Alu -1 149 7 4 1353 463 287 0 0 chr3 100706914 100707022 -58892761 - PB1D10 SINE Alu -9 108 1 4 1353 391 269 48 14 chr3 100707026 100707088 -58892695 - MLT1B LTR MaLR -219 171 109 4 1353 724 165 176 130 chr3 100707088 100707304 -58892479 - URR1A DNA MER1_type 0 226 1 4 1353 391 269 48 14 chr3 100707304 100707388 -58892395 - MLT1B LTR MaLR -282 108 21 4 1353 399 184 57 19 chr3 100708048 100708153 -58891630 + ID_B1 SINE B4 71 179 -45 4 1353 683 90 0 10 chr3 100708062 100708163 -58891620 + B1_Mus2 SINE Alu 9 108 -39 4 1353 273 310 85 42 chr3 100708172 100708400 -58891383 + RSINE1 SINE B4 82 292 0 4 1353 360 0 0 0 chr3 100708948 100708988 -58890795 + (TG)n Simple_repeat Simple_repeat 2 41 0 4 1353 619 83 53 0 chr3 100711241 100711373 -58888410 + (TAGA)n Simple_repeat Simple_repeat 4 142 0 4 1353 312 271 21 57 chr3 100711619 100711760 -58888023 + Charlie19a DNA Charlie 44 179 -207 4 1353 22 0 0 0 chr3 100711780 100711802 -58887981 + AT_rich Low_complexity Low_complexity 1 22 0 4 1353 32 0 0 0 chr3 100711829 100711861 -58887922 + AT_rich Low_complexity Low_complexity 1 32 0 4 1353 211 170 0 96 chr3 100711956 100712008 -58887775 - L2c LINE L2 -207 3180 3134 4 1353 212 253 99 44 chr3 100712223 100712314 -58887469 + ID_B1 SINE B4 79 174 -50 4 1353 411 230 79 10 chr3 100712237 100712338 -58887445 + PB1D10 SINE Alu 9 116 -1 4 1353 38 39 0 0 chr3 100713428 100713480 -58886303 + AT_rich Low_complexity Low_complexity 1 52 0 4 1353 714 206 44 0 chr3 100713551 100713687 -58886096 + B1_Mur1 SINE Alu 2 143 -6 4 1353 222 118 0 0 chr3 100713722 100713756 -58886027 + (GGGAA)n Simple_repeat Simple_repeat 4 37 0 4 1353 446 307 129 24 chr3 100713820 100714191 -58885592 + L1MC1 LINE L1 5819 6228 -105 4 1353 260 137 59 0 chr3 100714215 100714266 -58885517 + L1MC1 LINE L1 6276 6329 -4 4 1353 219 307 13 0 chr3 100714277 100714352 -58885431 + B4A SINE B4 9 84 -208 4 1353 407 319 28 0 chr3 100714555 100714696 -58885087 - MER33 DNA MER1_type -175 149 5 4 1353 900 180 104 0 chr3 100714859 100715042 -58884741 - URR1B DNA MER1_type 0 225 24 4 1353 297 0 0 0 chr3 100715707 100715740 -58884043 + (TG)n Simple_repeat Simple_repeat 2 34 0 4 1353 326 372 6 0 chr3 100715902 100716074 -58883709 + (TG)n Simple_repeat Simple_repeat 2 174 0 4 1353 489 335 0 0 chr3 100716190 100716360 -58883423 + (TG)n Simple_repeat Simple_repeat 1 170 0 4 1353 881 169 0 7 chr3 100716882 100717031 -58882752 - B1_Mus1 SINE Alu 0 148 1 4 1353 551 157 9 0 chr3 100717233 100717341 -58882442 + (CA)n Simple_repeat Simple_repeat 1 109 0 4 1353 454 310 89 65 chr3 100717342 100717556 -58882227 - MER2 DNA MER2_type 0 345 127 4 1353 1048 198 39 5 chr3 100717596 100717804 -58881979 - B3 SINE B2 0 216 2 4 1353 899 301 27 121 chr3 100717976 100718223 -58881560 - L1_Rod LINE L1 -602 5698 5412 4 1353 883 153 28 0 chr3 100718223 100718367 -58881416 - B1_Mur4 SINE Alu -2 148 1 4 1353 899 296 117 48 chr3 100718367 100719266 -58880517 - L1_Rod LINE L1 -436 5411 4488 4 1353 1142 69 7 0 chr3 100719360 100719504 -58880279 + B1_Mus2 SINE Alu 3 147 0 4 1353 223 49 24 24 chr3 100719519 100719561 -58880222 + (CAAA)n Simple_repeat Simple_repeat 2 43 0 4 1353 1418 85 5 0 chr3 100719717 100719905 -58879878 - B2_Mm1a SINE B2 -2 191 3 4 1353 180 158 0 0 chr3 100720595 100720633 -58879150 + CT-rich Low_complexity Low_complexity 3 40 0 4 1353 319 194 69 0 chr3 100720635 100720707 -58879076 - ID_B1 SINE B4 -66 158 82 4 1353 23 0 0 0 chr3 100720794 100720817 -58878966 + AT_rich Low_complexity Low_complexity 1 23 0 4 1353 573 227 69 28 chr3 100721119 100721264 -58878519 + B3A SINE B2 47 197 -1 4 1353 523 162 133 0 chr3 100721330 100721435 -58878348 + B1_Mur1 SINE Alu 10 128 -21 4 1353 228 237 34 0 chr3 100721463 100721518 -58878265 - ORR1E LTR MaLR 0 419 363 4 1353 755 156 16 8 chr3 100721518 100721647 -58878136 + B3 SINE B2 1 130 -86 4 1353 628 234 53 61 chr3 100721765 100722078 -58877705 - ORR1E LTR MaLR -75 309 4 4 1353 184 286 61 0 chr3 100722723 100722772 -58877011 - MIRm SINE MIR -8 268 217 4 1353 924 9 0 0 chr3 100722782 100722887 -58876896 + (TTC)n Simple_repeat Simple_repeat 2 106 0 4 1353 1169 36 0 21 chr3 100722888 100723031 -58876752 - B1_Mus2 SINE Alu -7 140 1 4 1353 181 200 0 82 chr3 100723863 100723912 -58875871 - L2 LINE L2 -1042 2377 2333 4 1353 224 196 22 0 chr3 100724515 100724561 -58875222 + MIRb SINE MIR 175 221 -47 4 1353 449 17 17 0 chr3 100724953 100725011 -58874772 + (TG)n Simple_repeat Simple_repeat 2 60 0 4 1353 259 283 18 0 chr3 100725019 100725086 -58874697 - ID4_ SINE ID -10 73 6 4 1353 411 298 52 96 chr3 100727574 100727823 -58871960 - MIRb SINE MIR -15 253 16 4 1353 816 266 58 0 chr3 100729674 100729881 -58869902 + ID_B1 SINE B4 5 223 -1 4 1353 584 194 111 44 chr3 100730303 100730438 -58869345 - B1_Mur1 SINE Alu -1 148 5 4 1353 952 66 0 14 chr3 100731597 100731736 -58868047 + (CA)n Simple_repeat Simple_repeat 2 138 0 4 1353 438 286 50 8 chr3 100732640 100732760 -58867023 - B1F1 SINE Alu -12 137 13 4 1353 435 301 44 29 chr3 100732760 100732777 -58867006 - ID_B1 SINE B4 -12 212 74 4 1353 266 291 25 12 chr3 100732811 100732891 -58866892 - MTE2b LTR MaLR -17 362 282 4 1353 2302 81 60 23 chr3 100734054 100734283 -58865500 + Lx LINE L1 6290 6518 -136 4 1353 186 43 0 0 chr3 100734283 100734306 -58865477 + (TGGG)n Simple_repeat Simple_repeat 3 25 0 4 1353 2302 81 60 23 chr3 100734306 100734428 -58865355 + Lx LINE L1 6519 6653 -1 4 1353 192 77 0 0 chr3 100734757 100734783 -58865000 + (TTG)n Simple_repeat Simple_repeat 2 27 0 4 1353 748 216 85 7 chr3 100734790 100734984 -58864799 + B3 SINE B2 1 212 -4 4 1353 248 331 51 81 chr3 100736482 100736679 -58863104 + L2b LINE L2 415 605 -2814 4 1353 315 283 205 73 chr3 100736950 100737404 -58862379 + L2b LINE L2 2242 2755 -664 4 1353 424 316 118 60 chr3 100737506 100737920 -58861863 + L2b LINE L2 2937 3374 -1 4 1353 231 217 43 0 chr3 100739095 100739141 -58860642 + L2b LINE L2 3313 3360 -15 4 1353 235 178 0 22 chr3 100739104 100739150 -58860633 + MIRm SINE MIR 227 271 -5 4 1353 1016 169 301 19 chr3 100739463 100739788 -58859995 + MTD LTR MaLR 1 417 -2 4 1353 288 238 48 0 chr3 100740007 100740070 -58859713 + ID_B1 SINE B4 70 135 -89 4 1353 402 277 39 29 chr3 100740679 100740783 -58859000 + B1F1 SINE Alu 1 105 -12 4 1353 326 214 0 54 chr3 100740846 100740920 -58858863 + ID4_ SINE ID 3 72 -11 4 1353 267 103 0 0 chr3 100740924 100740963 -58858820 + (TAAA)n Simple_repeat Simple_repeat 1 39 0 4 1353 252 250 29 0 chr3 100740965 100741033 -58858750 + ID4_ SINE ID 1 70 -13 4 1353 394 243 261 16 chr3 100742266 100742454 -58857329 + Lx8 LINE L1 7107 7340 -133 4 1353 505 295 37 15 chr3 100743247 100743381 -58856402 - B1F2 SINE Alu -9 140 4 4 1353 462 323 30 30 chr3 100743381 100743413 -58856370 - ID_B1 SINE B4 -9 215 50 4 1353 611 214 87 0 chr3 100743473 100743599 -58856184 - B1F SINE Alu -1 148 12 4 1353 226 267 112 56 chr3 100743667 100743774 -58856009 - ID_B1 SINE B4 -93 131 19 4 1353 333 62 0 0 chr3 100744397 100744445 -58855338 + (TC)n Simple_repeat Simple_repeat 1 48 0 4 1353 318 69 0 49 chr3 100744445 100744506 -58855277 + (TA)n Simple_repeat Simple_repeat 1 58 0 4 1353 1248 41 0 0 chr3 100745956 100746102 -58853681 + B1_Mm SINE Alu 2 147 0 4 1353 357 159 0 0 chr3 100746102 100746165 -58853618 + A-rich Low_complexity Low_complexity 1 63 0 4 1353 310 283 19 19 chr3 100746656 100746764 -58853019 + PB1D10 SINE Alu 7 114 -3 4 1353 1031 122 7 0 chr3 100747208 100747355 -58852428 - B1_Mus1 SINE Alu 0 148 1 4 1353 186 43 0 0 chr3 100748971 100748994 -58850789 + (TG)n Simple_repeat Simple_repeat 1 23 0 4 1353 21 0 0 0 chr3 100750251 100750272 -58849511 + AT_rich Low_complexity Low_complexity 1 21 0 4 1353 456 274 284 17 chr3 100750280 100750636 -58849147 - Lx9 LINE L1 0 7644 7194 5 1353 361 272 21 11 chr3 100751067 100751160 -58848623 + RSINE1 SINE B4 3 96 -69 5 1353 520 265 68 0 chr3 100752340 100752487 -58847296 - RSINE1 SINE B4 -6 159 3 5 1353 1100 50 0 21 chr3 100752518 100752660 -58847123 + B1_Mus1 SINE Alu 10 148 0 5 1353 213 39 0 0 chr3 100752662 100752688 -58847095 + (GGAA)n Simple_repeat Simple_repeat 3 28 0 5 1353 659 12 12 0 chr3 100752688 100752767 -58847016 + (GGAGA)n Simple_repeat Simple_repeat 5 85 0 5 1353 27 0 0 0 chr3 100753208 100753235 -58846548 + AT_rich Low_complexity Low_complexity 1 27 0 5 1353 357 237 12 62 chr3 100756668 100756749 -58843034 + BC1_Mm scRNA scRNA 1 77 -6 5 1353 180 0 0 0 chr3 100756749 100756769 -58843014 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 5 1353 357 295 30 23 chr3 100756769 100756837 -58842946 + BC1_Mm scRNA scRNA 78 146 -6 5 1353 621 171 38 3 chr3 100757282 100757424 -58842359 - B3 SINE B2 -1 197 43 5 1353 242 269 76 13 chr3 100757440 100757519 -58842264 + BC1_Mm scRNA scRNA 9 92 -60 5 1353 961 120 55 44 chr3 100758666 100758849 -58840934 - B2_Mm2 SINE B2 -9 186 2 5 1353 498 108 0 0 chr3 100759899 100759973 -58839810 + (GAAA)n Simple_repeat Simple_repeat 2 75 0 5 1353 219 69 0 0 chr3 100760594 100760623 -58839160 + (TA)n Simple_repeat Simple_repeat 2 30 0 5 1353 478 316 50 69 chr3 100760639 100760799 -58838984 - RSINE1 SINE B4 -4 161 5 5 1353 739 307 136 12 chr3 100761083 100761406 -58838377 + MER68 LTR ERVL 146 508 -55 5 1353 223 283 74 83 chr3 100761592 100761700 -58838083 + MIRm SINE MIR 43 149 -127 5 1353 855 147 41 14 chr3 100762668 100762813 -58836970 - B1_Mur4 SINE Alu 0 150 2 5 1353 211 329 110 0 chr3 100763286 100763359 -58836424 + ID SINE ID 2 82 -142 5 1353 1114 92 0 0 chr3 100764015 100764156 -58835627 - B1_Mus2 SINE Alu -5 142 2 5 1353 338 187 60 35 chr3 100764530 100764642 -58835141 + B1_Mur1 SINE Alu 2 148 -1 5 1353 288 0 0 0 chr3 100764660 100764692 -58835091 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 5 1353 1239 194 14 0 chr3 100766019 100766241 -58833542 - URR1B DNA MER1_type 0 225 1 5 1353 484 268 52 11 chr3 100766284 100766459 -58833324 - B3A SINE B2 0 216 36 5 1353 288 0 0 0 chr3 100767639 100767671 -58832112 + (TA)n Simple_repeat Simple_repeat 1 32 0 5 1353 565 246 20 114 chr3 100768109 100768311 -58831472 - B3A SINE B2 -4 194 12 5 1353 270 81 0 0 chr3 100768327 100768364 -58831419 + (GA)n Simple_repeat Simple_repeat 1 37 0 5 1353 480 183 54 0 chr3 100768392 100768485 -58831298 - B4A SINE B4 -194 98 1 5 1353 216 0 0 0 chr3 100769299 100769323 -58830460 + (CAAT)n Simple_repeat Simple_repeat 1 24 0 5 1353 477 278 148 31 chr3 100769366 100769622 -58830161 + B4A SINE B4 3 288 -4 5 1353 420 278 144 27 chr3 100769678 100769970 -58829813 + L1M5 LINE L1 4373 4698 -1448 5 1353 180 0 0 0 chr3 100770071 100770091 -58829692 + (T)n Simple_repeat Simple_repeat 1 20 0 5 1353 1069 120 173 0 chr3 100770534 100770725 -58829058 - URR1A DNA MER1_type 0 226 3 5 1353 21 0 0 0 chr3 100770799 100770820 -58828963 + AT_rich Low_complexity Low_complexity 1 21 0 5 1353 237 108 0 0 chr3 100770866 100770903 -58828880 + (TG)n Simple_repeat Simple_repeat 1 37 0 5 1353 752 193 20 33 chr3 100771110 100771260 -58828523 - B1F2 SINE Alu 0 149 2 5 1353 478 98 0 47 chr3 100771412 100771520 -58828263 - B1_Mur4 SINE Alu 0 150 54 5 1353 1152 197 9 0 chr3 100771907 100772120 -58827663 - B3 SINE B2 0 216 2 5 1353 1226 41 0 0 chr3 100772513 100772660 -58827123 + B1_Mus1 SINE Alu 2 148 0 5 1353 1055 142 101 10 chr3 100772799 100773006 -58826777 - URR1A DNA MER1_type 0 226 1 5 1353 659 178 10 91 chr3 100774256 100774274 -58825509 + ID_B1 SINE B4 80 154 -138 5 1353 1123 64 0 0 chr3 100774274 100774415 -58825368 + B1_Mus2 SINE Alu 7 147 0 5 1353 659 178 10 91 chr3 100774415 100774434 -58825349 + ID_B1 SINE B4 155 246 -46 5 1353 21 36 0 0 chr3 100774833 100774861 -58824922 + AT_rich Low_complexity Low_complexity 1 28 0 5 1353 2181 126 129 15 chr3 100775101 100775152 -58824631 + RMER4B LTR ERVK 1 60 -525 5 1353 207 0 0 0 chr3 100775152 100775175 -58824608 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 5 1353 2181 141 119 39 chr3 100775175 100775610 -58824173 + RMER4B LTR ERVK 60 456 -10 5 1353 659 128 111 0 chr3 100775681 100775798 -58823985 - B2_Mm2 SINE B2 -65 130 1 5 1353 513 287 35 14 chr3 100776357 100776502 -58823281 - B1F SINE Alu -1 148 1 5 1353 434 76 0 0 chr3 100776565 100776631 -58823152 - B2_Mm1a SINE B2 -3 190 125 5 1353 1216 70 0 0 chr3 100776664 100776821 -58822962 - B2_Mm2 SINE B2 -30 165 9 5 1353 418 203 152 68 chr3 100777552 100777684 -58822099 + B1F SINE Alu 1 143 -6 5 1353 186 71 0 0 chr3 100777696 100777724 -58822059 + (TTA)n Simple_repeat Simple_repeat 1 28 0 5 1353 783 200 14 0 chr3 100777726 100777871 -58821912 - B1_Mus1 SINE Alu 0 148 2 5 1353 26 0 0 0 chr3 100777871 100777897 -58821886 + AT_rich Low_complexity Low_complexity 1 26 0 5 1353 877 264 119 0 chr3 100778458 100778719 -58821064 - B4A SINE B4 0 292 1 5 1353 317 209 194 0 chr3 100778762 100778892 -58820891 - L1ME3 LINE L1 -382 5977 5824 5 1353 297 0 0 0 chr3 100779551 100779584 -58820199 + (CA)n Simple_repeat Simple_repeat 1 33 0 5 1353 1937 245 87 7 chr3 100779881 100780232 -58819551 - Lx8 LINE L1 -541 6932 6557 5 1353 1110 61 0 0 chr3 100780232 100780379 -58819404 + (CTGGGG)n Simple_repeat Simple_repeat 5 151 0 5 1353 1937 245 87 7 chr3 100780379 100780570 -58819213 - Lx8 LINE L1 -917 6556 6347 5 1353 830 310 37 4 chr3 100780654 100781051 -58818732 - Lx8 LINE L1 -1456 6017 5578 5 1353 1228 285 51 30 chr3 100781083 100781517 -58818266 + Lx8 LINE L1 7029 7471 -2 5 1353 270 0 0 0 chr3 100782638 100782668 -58817115 + (A)n Simple_repeat Simple_repeat 1 30 0 5 1353 284 310 161 39 chr3 100782676 100782881 -58816902 - L3 LINE CR1 -720 3769 3540 5 1353 782 78 0 9 chr3 100783653 100783769 -58816014 + (TG)n Simple_repeat Simple_repeat 1 115 0 5 1353 206 62 31 0 chr3 100784162 100784194 -58815589 + (TG)n Simple_repeat Simple_repeat 1 33 0 5 1353 271 238 244 8 chr3 100784325 100784448 -58815335 + MLT1A0 LTR MaLR 1 152 -222 5 1353 647 293 26 68 chr3 100784485 100784750 -58815033 + B4A SINE B4 7 274 -18 5 1353 732 59 0 0 chr3 100784777 100784879 -58814904 + (GA)n Simple_repeat Simple_repeat 1 102 0 5 1353 275 107 36 0 chr3 100784880 100784936 -58814847 + (CAGA)n Simple_repeat Simple_repeat 3 60 0 5 1353 449 272 101 48 chr3 100784962 100785151 -58814632 + MLT1A0 LTR MaLR 167 365 0 5 1353 779 285 52 163 chr3 100786691 100786834 -58812949 + MLT2B2 LTR ERVL 1 148 -367 5 1353 1042 215 5 9 chr3 100786834 100787045 -58812738 + B3 SINE B2 2 211 -5 5 1353 779 285 52 163 chr3 100787045 100787479 -58812304 + MLT2B2 LTR ERVL 149 514 -1 5 1353 371 320 128 26 chr3 100787764 100788069 -58811714 - L1M5 LINE L1 -1168 4978 4643 5 1353 229 266 188 21 chr3 100788313 100788505 -58811278 - L1M5 LINE L1 -1564 4582 4359 5 1353 945 251 87 56 chr3 100788653 100789008 -58810775 - RLTR14 LTR ERV1 -3 379 14 5 1353 310 261 53 23 chr3 100789135 100789268 -58810515 - L1M5 LINE L1 -2144 4002 3866 5 1353 1133 277 31 13 chr3 100789283 100789691 -58810092 - L1MB3 LINE L1 -193 5990 5580 5 1353 339 25 0 0 chr3 100790208 100790248 -58809535 + (TG)n Simple_repeat Simple_repeat 1 40 0 5 1353 361 307 102 0 chr3 100790368 100790495 -58809288 - ID_B1 SINE B4 -2 222 83 5 1353 559 259 9 0 chr3 100791321 100791437 -58808346 + PB1D10 SINE Alu 1 117 0 5 1353 453 116 0 0 chr3 100791562 100791631 -58808152 + (TCCC)n Simple_repeat Simple_repeat 2 70 0 5 1353 253 189 0 70 chr3 100791633 100791690 -58808093 - PB1D10 SINE Alu 0 117 65 5 1353 289 358 59 47 chr3 100792624 100792794 -58806989 + LTR88b LTR Gypsy? 666 837 0 5 1353 282 296 78 31 chr3 100793023 100793053 -58806730 + MIR3 SINE MIR 4 32 -176 5 1353 866 174 223 0 chr3 100793053 100793237 -58806546 + URR1A DNA MER1_type 1 225 -1 5 1353 283 298 76 34 chr3 100793237 100793362 -58806421 + MIRc SINE MIR 33 174 -94 5 1353 338 221 14 14 chr3 100793868 100793894 -58805889 - MTD LTR MaLR -3 356 331 5 1353 224 30 30 0 chr3 100793894 100793927 -58805856 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 5 1353 1367 253 110 21 chr3 100793927 100794280 -58805503 - MTD LTR MaLR -32 387 1 5 169 387 305 57 31 chr3 100794280 100794439 -58805344 - MER58A DNA MER1_type -61 163 1 5 1354 857 284 17 105 chr3 100794631 100794926 -58804857 + B4A SINE B4 18 286 -6 5 1354 432 0 0 0 chr3 100794955 100795003 -58804780 + (CA)n Simple_repeat Simple_repeat 2 49 0 5 1354 220 339 46 53 chr3 100795030 100795161 -58804622 + L3 LINE CR1 3824 3953 -536 5 1354 440 217 0 12 chr3 100795431 100795515 -58804268 + B1_Mur1 SINE Alu 46 128 -21 5 1354 225 283 10 71 chr3 100795515 100795528 -58804255 + RLTR25A LTR ERVK 522 612 -491 5 1354 1070 186 29 19 chr3 100795535 100795743 -58804040 + B3 SINE B2 4 213 -3 5 1354 21 0 0 0 chr3 100796021 100796042 -58803741 + AT_rich Low_complexity Low_complexity 1 21 0 5 1354 423 0 0 0 chr3 100796412 100796459 -58803324 + (TG)n Simple_repeat Simple_repeat 1 47 0 5 1354 186 167 0 0 chr3 100796569 100796605 -58803178 + CT-rich Low_complexity Low_complexity 2 37 0 5 1354 348 259 146 80 chr3 100796605 100796756 -58803027 - MT2B LTR ERVL -262 339 179 5 1354 751 193 0 43 chr3 100796621 100796762 -58803021 - B1_Mus2 SINE Alu -2 145 11 5 1354 228 239 39 90 chr3 100796864 100796942 -58802841 + PB1D10 SINE Alu 44 117 0 5 1354 189 213 0 0 chr3 100798064 100798111 -58801672 + A-rich Low_complexity Low_complexity 1 47 0 5 1354 208 245 0 0 chr3 100799113 100799162 -58800621 + L2c LINE L2 3285 3333 -54 5 1354 551 259 0 17 chr3 100799447 100799565 -58800218 - PB1D10 SINE Alu -1 116 1 5 1354 340 303 135 38 chr3 100800376 100800582 -58799201 + MIRb SINE MIR 45 257 -5 5 1354 376 314 42 21 chr3 100800661 100800804 -58798979 + ORR1E LTR MaLR 4 149 -210 5 1354 1658 212 31 14 chr3 100801147 100801505 -58798278 + ORR1D2 LTR MaLR 4 367 -3 6 1354 441 0 0 0 chr3 100802101 100802150 -58797633 + (GA)n Simple_repeat Simple_repeat 1 49 0 6 1354 548 216 63 16 chr3 100802625 100802752 -58797031 + ID_B1 SINE B4 90 222 -2 6 1354 201 39 0 0 chr3 100802753 100802779 -58797004 + (A)n Simple_repeat Simple_repeat 1 26 0 6 1354 930 88 0 0 chr3 100803508 100803655 -58796128 + (TC)n Simple_repeat Simple_repeat 2 148 0 6 1354 490 309 63 50 chr3 100803663 100803884 -58795899 - B4A SINE B4 -61 231 8 6 1354 1004 287 86 4 chr3 100804950 100805219 -58794564 + MTE2b LTR MaLR 1 291 -88 6 1354 320 115 0 0 chr3 100805224 100805276 -58794507 - B1_Mus2 SINE Alu 0 147 96 6 1354 229 305 100 120 chr3 100806588 100806897 -58792886 + ORR1D1 LTR MaLR 25 327 -47 6 1354 246 230 65 54 chr3 100808968 100809060 -58790723 - MTEa LTR MaLR -4 375 283 6 1354 383 278 162 22 chr3 100809054 100809190 -58790593 - MTEa-int LTR MaLR -674 906 752 6 1354 282 242 198 20 chr3 100809294 100809395 -58790388 - B1F SINE Alu -30 119 1 6 1354 1430 303 132 51 chr3 100809395 100810041 -58789742 - MTEa-int LTR MaLR -882 698 1 6 1354 598 343 31 92 chr3 100810035 100810051 -58789732 - MTEa LTR MaLR -10 369 355 6 1354 246 105 0 0 chr3 100810051 100810089 -58789694 + (CTG)n Simple_repeat Simple_repeat 1 38 0 6 1354 598 343 31 92 chr3 100810089 100810454 -58789329 - MTEa LTR MaLR -25 354 12 6 1354 225 323 29 29 chr3 100810851 100810953 -58788830 + LTR50 LTR ERVL 148 249 -546 6 1354 302 349 98 7 chr3 100811172 100811325 -58788458 - L3b LINE CR1 -29 453 287 6 1354 414 0 0 0 chr3 100812209 100812255 -58787528 + (CA)n Simple_repeat Simple_repeat 2 47 0 6 1354 905 153 36 12 chr3 100812306 100812471 -58787312 - URR1A DNA MER1_type 0 226 58 6 1354 564 256 11 95 chr3 100812607 100812797 -58786986 - RMER30 DNA MER1_type -23 179 6 6 1354 267 355 126 50 chr3 100813297 100813599 -58786184 - L2c LINE L2 -9 3378 3054 6 1354 237 255 0 0 chr3 100814062 100814109 -58785674 + ID_B1 SINE B4 130 176 -48 6 1354 285 305 113 9 chr3 100814131 100814237 -58785546 + PB1D10 SINE Alu 1 117 0 6 1354 381 43 0 0 chr3 100814272 100814319 -58785464 + (GGA)n Simple_repeat Simple_repeat 2 48 0 6 1354 2327 104 82 11 chr3 100814799 100815171 -58784612 + ORR1B1 LTR MaLR 1 386 -8 6 1354 279 303 66 0 chr3 100815358 100815434 -58784349 + MamRep38 DNA hAT 201 281 -14 6 1354 514 262 28 9 chr3 100815540 100815648 -58784135 - PB1D10 SINE Alu -6 111 2 6 1354 618 89 0 0 chr3 100817444 100817534 -58782249 + (TGGA)n Simple_repeat Simple_repeat 4 93 0 6 1354 22 56 0 0 chr3 100818004 100818040 -58781743 + AT_rich Low_complexity Low_complexity 1 36 0 6 1354 276 240 13 39 chr3 100818324 100818402 -58781381 + MIRb SINE MIR 95 170 -98 6 1354 221 83 28 0 chr3 100818766 100818802 -58780981 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 6 1354 203 327 50 0 chr3 100820317 100820418 -58779365 + (CATG)n Simple_repeat Simple_repeat 3 108 0 6 1354 194 340 76 19 chr3 100820478 100820583 -58779200 - MIR3 SINE MIR -5 203 93 6 1354 204 350 109 62 chr3 100823165 100823293 -58776490 + MIRc SINE MIR 17 150 -118 6 1354 1271 20 0 0 chr3 100823570 100823719 -58776064 + B2_Mm1a SINE B2 12 160 -33 6 1354 414 0 0 0 chr3 100823719 100823765 -58776018 + (TAAA)n Simple_repeat Simple_repeat 3 48 0 6 1354 469 306 86 81 chr3 100826135 100826406 -58773377 + L1ME3B LINE L1 5665 5924 -316 6 1354 774 204 231 6 chr3 100826406 100826579 -58773204 + B3 SINE B2 1 212 -4 6 1354 469 306 86 81 chr3 100826579 100826865 -58772918 + L1ME3B LINE L1 5925 6225 -15 6 1354 802 265 23 27 chr3 100826890 100827111 -58772672 + B4A SINE B4 10 229 -63 6 1354 3215 227 51 26 chr3 100827143 100827993 -58771790 + Lx9 LINE L1 6748 7618 -26 6 1354 1224 48 0 0 chr3 100828048 100828194 -58771589 - B1_Mm SINE Alu 0 147 2 6 1354 645 117 0 0 chr3 100828233 100828304 -58771479 + (GA)n Simple_repeat Simple_repeat 2 72 0 6 1354 1179 117 0 0 chr3 100828304 100828484 -58771299 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 6 1354 645 117 0 0 chr3 100828484 100828515 -58771268 + (GA)n Simple_repeat Simple_repeat 1 31 0 6 1354 249 200 88 125 chr3 100828519 100828599 -58771184 + B4A SINE B4 216 292 0 6 1354 1481 246 72 25 chr3 100829044 100829444 -58770339 - MTD LTR MaLR 0 419 1 6 1354 448 298 476 9 chr3 100830427 100830654 -58769129 - MLT1A0 LTR MaLR -75 333 1 6 1354 249 33 0 0 chr3 100830773 100830803 -58768980 + (TG)n Simple_repeat Simple_repeat 1 30 0 6 1354 243 342 77 58 chr3 100831091 100831246 -58768537 + RSINE1 SINE B4 2 159 -6 6 1354 413 327 35 114 chr3 100832206 100832716 -58767067 + Charlie4a DNA MER1_type 1 470 -38 6 1354 214 215 14 84 chr3 100833871 100833942 -58765841 + MIR SINE MIR 184 249 -19 6 1354 800 130 12 12 chr3 100834216 100834379 -58765404 + (TCCA)n Simple_repeat Simple_repeat 2 164 0 6 1354 417 20 0 0 chr3 100834379 100834429 -58765354 + (CATA)n Simple_repeat Simple_repeat 1 50 0 6 1354 272 270 33 33 chr3 100836026 100836118 -58763665 - MLT1H LTR MaLR 0 549 458 6 1354 468 195 29 79 chr3 100836239 100836378 -58763405 + RMER15 LTR ERVL 28 159 -416 6 1354 957 210 79 56 chr3 100836377 100836568 -58763215 + RMER15 LTR ERVL 275 475 -100 6 1354 273 29 0 0 chr3 100836568 100836602 -58763181 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 6 1354 1195 30 0 0 chr3 100836602 100836737 -58763046 - B1_Mm SINE Alu -11 136 2 6 1354 957 210 79 56 chr3 100836737 100836796 -58762987 + RMER15 LTR ERVL 476 531 -44 6 1354 236 239 0 0 chr3 100837187 100837233 -58762550 + GA-rich Low_complexity Low_complexity 2 47 0 6 1354 223 350 9 64 chr3 100837529 100837639 -58762144 - MIRc SINE MIR -92 176 73 6 1354 1380 189 269 3 chr3 100837642 100837965 -58761818 + MTD LTR MaLR 1 409 -10 6 1354 223 239 31 110 chr3 100838757 100838795 -58760988 - B4 SINE B4 -174 118 2 6 1354 273 232 56 79 chr3 100838795 100838884 -58760899 - B3A SINE B2 -110 88 2 6 1354 515 186 1 66 chr3 100838933 100839051 -58760732 - B1F SINE Alu -32 117 6 6 1354 273 321 88 18 chr3 100839099 100839213 -58760570 - Tigger13a DNA MER2_type -271 500 379 6 1354 286 295 87 61 chr3 100839301 100839497 -58760286 - L1MB2 LINE L1 -132 6036 5836 6 1354 249 126 56 22 chr3 100839580 100839669 -58760114 + (TCTA)n Simple_repeat Simple_repeat 2 93 0 6 1354 352 247 424 10 chr3 100839733 100839924 -58759859 - B4A SINE B4 -20 272 3 6 1354 1088 236 122 87 chr3 100839925 100840233 -58759550 - L1MB2 LINE L1 -340 5831 5511 6 1354 914 210 38 22 chr3 100840233 100840418 -58759365 - B3A SINE B2 -10 188 1 6 1354 1088 254 188 85 chr3 100840418 100840971 -58758812 - L1MB2 LINE L1 -661 5510 4902 6 1354 912 223 140 102 chr3 100842483 100842895 -58756888 + MT2B LTR ERVL 1 544 -57 6 1354 227 31 31 0 chr3 100842895 100842927 -58756856 + (TATG)n Simple_repeat Simple_repeat 4 36 0 6 1354 912 261 95 27 chr3 100842927 100842964 -58756819 + MT2B LTR ERVL 545 593 -8 6 1354 268 312 43 26 chr3 100843033 100843148 -58756635 - B4A SINE B4 0 292 176 6 1354 218 307 119 0 chr3 100843093 100843194 -58756589 - PB1D10 SINE Alu 0 117 5 6 1354 561 211 0 0 chr3 100843226 100843349 -58756434 + (TA)n Simple_repeat Simple_repeat 1 123 0 6 1354 3126 40 50 5 chr3 100843350 100843729 -58756054 - MTA_Mm LTR MaLR 0 396 1 6 1354 924 273 5 0 chr3 100843734 100843928 -58755855 - B3 SINE B2 -21 195 1 6 1354 279 306 14 0 chr3 100843955 100844027 -58755756 - B4 SINE B4 -217 75 3 6 1354 300 91 0 0 chr3 100846438 100846482 -58753301 + (C)n Simple_repeat Simple_repeat 1 44 0 6 1354 309 255 139 69 chr3 100848457 100848558 -58751225 + RMER15 LTR ERVL 454 561 -14 6 1354 404 278 0 10 chr3 100848947 100849045 -58750738 + ID_B1 SINE B4 121 217 -7 6 1354 234 229 131 0 chr3 100850444 100850505 -58749278 - ID2 SINE ID -13 70 2 6 1354 892 222 26 16 chr3 100851035 100851173 -58748610 + B3A SINE B2 5 143 -55 6 1354 435 19 0 0 chr3 100851173 100851225 -58748558 + (CAGA)n Simple_repeat Simple_repeat 4 55 0 6 1354 892 222 26 16 chr3 100851225 100851278 -58748505 + B3A SINE B2 144 197 -1 6 1354 258 156 0 0 chr3 100852148 100852193 -58747590 + A-rich Low_complexity Low_complexity 1 45 0 6 1354 2233 165 39 24 chr3 100853488 100853903 -58745880 + MTC LTR MaLR 1 421 0 6 1354 195 184 0 0 chr3 100854842 100854880 -58744903 + (TG)n Simple_repeat Simple_repeat 1 38 0 6 1354 187 219 38 88 chr3 100855600 100855680 -58744103 - L3 LINE CR1 -4403 86 11 6 1354 934 218 51 10 chr3 100856808 100857003 -58742780 - B3 SINE B2 -4 212 10 6 1354 277 212 45 15 chr3 100857654 100857668 -58742115 + B4A SINE B4 71 86 -206 6 1354 383 152 30 0 chr3 100857668 100857734 -58742049 + B1_Mus2 SINE Alu 2 69 -78 6 1354 499 222 152 11 chr3 100857766 100857933 -58741850 - B3A SINE B2 -32 184 2 6 1354 259 323 90 0 chr3 100859253 100859420 -58740363 + L1MB8 LINE L1 5673 5854 -324 6 1354 455 263 11 46 chr3 100859498 100859673 -58740110 + L1MB8 LINE L1 5993 6161 -17 6 1354 870 261 88 16 chr3 100859698 100859947 -58739836 + B4A SINE B4 1 267 -25 6 1354 619 95 19 0 chr3 100859970 100860075 -58739708 + (CA)n Simple_repeat Simple_repeat 1 107 0 6 1354 220 313 236 10 chr3 100861775 100862085 -58737698 - L2 LINE L2 -337 3082 2703 6 1354 582 258 72 21 chr3 100862120 100862291 -58737492 + ID_B1 SINE B4 46 230 -62 6 1354 263 338 35 56 chr3 100862168 100862312 -58737471 - YREP_Mm Unknown Unknown -1516 296 156 6 1354 447 19 0 0 chr3 100862391 100862443 -58737340 + (CAAAG)n Simple_repeat Simple_repeat 3 54 0 6 1354 526 307 283 14 chr3 100862913 100863570 -58736213 - L2 LINE L2 -1469 1950 1117 6 1354 276 272 65 46 chr3 100863945 100864053 -58735730 + MER5B DNA MER1_type 53 162 -16 6 1354 357 320 159 11 chr3 100864057 100864408 -58735375 - L2 LINE L2 -2643 776 374 6 1354 1000 194 46 0 chr3 100865189 100865385 -58734398 + B3 SINE B2 11 215 -1 6 1354 845 169 11 0 chr3 100865396 100865574 -58734209 + GA-rich Low_complexity Low_complexity 1 180 0 6 1354 276 277 98 4 chr3 100867210 100867327 -58732456 + MIRb SINE MIR 9 145 -123 6 1354 604 233 122 86 chr3 100867410 100867631 -58732152 + B4 SINE B4 52 280 -12 6 1354 331 280 0 20 chr3 100868221 100868323 -58731460 + L1MA8 LINE L1 5694 5793 -498 6 1354 249 83 0 0 chr3 100868334 100868370 -58731413 + (CACG)n Simple_repeat Simple_repeat 4 39 0 6 1354 826 267 164 17 chr3 100868379 100868726 -58731057 + L1MA8 LINE L1 5856 6253 -38 6 1354 763 223 7 33 chr3 100868741 100868894 -58730889 + B1_Mur1 SINE Alu 1 149 0 7 1354 327 132 0 0 chr3 100868901 100868969 -58730814 + (CA)n Simple_repeat Simple_repeat 1 68 0 7 1354 202 368 139 0 chr3 100870588 100870732 -58729051 + L4 LINE RTE 180 343 -1686 7 1354 375 221 10 40 chr3 100870827 100870926 -58728857 + PB1D10 SINE Alu 21 116 -1 7 1354 211 291 0 0 chr3 100870970 100871025 -58728758 + (TG)n Simple_repeat Simple_repeat 1 55 0 7 1354 201 373 71 58 chr3 100871527 100871752 -58728031 - MIR SINE MIR 0 262 35 7 1354 755 341 78 76 chr3 100872783 100873491 -58726292 + L4 LINE RTE 1235 1943 -86 7 1354 205 264 104 0 chr3 100873898 100873962 -58725821 + MIRb SINE MIR 193 262 0 7 1354 231 61 0 0 chr3 100874094 100874127 -58725656 + (TG)n Simple_repeat Simple_repeat 2 34 0 7 1354 464 195 166 8 chr3 100878704 100878818 -58720965 + B1_Mur1 SINE Alu 1 119 -1 7 1354 1218 304 65 23 chr3 100878903 100879378 -58720405 + Charlie4a DNA MER1_type 1 495 -13 7 1354 504 254 88 0 chr3 100879386 100879500 -58720283 + PB1 SINE Alu 2 125 -2 7 1354 191 319 64 48 chr3 100880145 100880270 -58719513 + L2b LINE L2 3240 3366 -9 7 1354 252 0 0 0 chr3 100880628 100880656 -58719127 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 7 1354 310 181 125 0 chr3 100881639 100881711 -58718072 + MIR SINE MIR 92 172 -90 7 1354 190 277 62 0 chr3 100882264 100882329 -58717454 - L3 LINE CR1 -276 4213 4145 7 1354 505 235 29 50 chr3 100882790 100882929 -58716854 - B1F1 SINE Alu -13 136 1 7 1354 225 328 91 20 chr3 100883258 100883417 -58716366 + MIRc SINE MIR 51 216 -46 7 1354 250 274 147 28 chr3 100883734 100883843 -58715940 - MIR SINE MIR -122 140 19 7 1354 22 0 0 0 chr3 100884882 100884904 -58714879 + AT_rich Low_complexity Low_complexity 1 22 0 7 1354 1149 270 106 17 chr3 100885472 100885879 -58713904 + MLT1C LTR MaLR 16 458 -9 7 1354 372 294 80 64 chr3 100885920 100886171 -58713612 + MER112 DNA MER1_type 4 258 -3 7 1354 212 176 118 0 chr3 100886409 100886460 -58713323 + ID4_ SINE ID 2 58 -25 7 1354 478 28 14 27 chr3 100886485 100886558 -58713225 + (TAGA)n Simple_repeat Simple_repeat 3 74 0 7 1354 291 256 143 9 chr3 100886607 100886701 -58713082 + PB1 SINE Alu 18 120 -7 7 1354 1296 94 39 6 chr3 100886792 100886974 -58712809 - B2_Mm2 SINE B2 -7 188 1 7 1354 188 196 67 67 chr3 100887718 100887778 -58712005 + MIRc SINE MIR 89 148 -120 7 1354 672 255 28 62 chr3 100887781 100888047 -58711736 + B4A SINE B4 1 292 0 7 1354 228 315 67 11 chr3 100888153 100888243 -58711540 + MIR SINE MIR 158 252 -10 7 1354 1065 226 14 14 chr3 100888563 100888778 -58711005 - B3 SINE B2 0 216 2 7 1354 315 304 269 7 chr3 100888850 100889062 -58710721 + L2 LINE L2 2672 2951 -468 7 1354 2930 12 0 0 chr3 100889062 100889384 -58710399 + RLTRETN_Mm LTR ERVK 1 322 0 7 1354 315 304 269 7 chr3 100889384 100889469 -58710314 + L2 LINE L2 2952 3046 -373 7 1354 394 282 148 77 chr3 100889526 100889695 -58710088 - B3A SINE B2 -16 182 2 7 1354 227 339 55 49 chr3 100889963 100890146 -58709637 + L2 LINE L2 2897 3080 -339 7 1354 410 313 39 32 chr3 100890748 100890903 -58708880 + RSINE1 SINE B4 4 159 -6 7 1354 216 0 0 0 chr3 100890941 100890965 -58708818 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 7 1354 220 147 29 0 chr3 100891057 100891091 -58708692 - PB1D7 SINE Alu -20 100 66 7 1354 216 250 236 0 chr3 100891063 100891135 -58708648 - B1_Mus1 SINE Alu -56 92 4 7 1354 290 304 13 0 chr3 100891177 100891256 -58708527 + ID_B1 SINE B4 18 97 -127 7 1354 1172 14 0 0 chr3 100891298 100891437 -58708346 - L1Md_A LINE L1 0 6582 6444 7 1354 1953 34 0 0 chr3 100891437 100891672 -58708111 + L1Md_A LINE L1 6203 6437 -145 7 1354 189 0 0 0 chr3 100891839 100891860 -58707923 + (A)n Simple_repeat Simple_repeat 1 21 0 7 1354 292 325 38 50 chr3 100892210 100892369 -58707414 + RMER4B LTR ERVK 14 170 -415 7 1354 261 304 114 84 chr3 100892654 100892891 -58706892 + L4 LINE RTE 1780 2023 -6 7 1354 389 204 213 0 chr3 100893335 100893443 -58706340 + B1F SINE Alu 18 148 -1 7 1354 263 312 0 12 chr3 100893778 100893859 -58705924 + ID2 SINE ID 2 81 -2 7 1354 545 250 186 26 chr3 100893874 100894030 -58705753 + B3A SINE B2 2 182 -16 7 1354 598 287 236 23 chr3 100894098 100894929 -58704854 + L1MEg LINE L1 636 1643 -4441 7 1354 288 222 296 0 chr3 100894973 100895054 -58704729 + RSINE1 SINE B4 18 122 -43 7 1354 21 36 0 0 chr3 100895174 100895202 -58704581 + AT_rich Low_complexity Low_complexity 1 28 0 7 1354 317 268 131 20 chr3 100895392 100895491 -58704292 + PB1D7 SINE Alu 11 120 0 7 1354 518 282 70 13 chr3 100896036 100896173 -58703610 + B3A SINE B2 1 148 -50 7 1354 564 121 0 0 chr3 100896173 100896264 -58703519 + (CA)n Simple_repeat Simple_repeat 1 91 0 7 1354 518 282 70 13 chr3 100896264 100896284 -58703499 + B3A SINE B2 149 166 -32 7 1354 822 129 45 8 chr3 100897232 100897365 -58702418 + B1_Mur4 SINE Alu 6 143 -7 7 1354 379 316 150 59 chr3 100897395 100897715 -58702068 + ORR1E LTR MaLR 1 349 -10 7 1354 1155 136 126 0 chr3 100898188 100898387 -58701396 - URR1A DNA MER1_type 0 226 3 7 1354 613 311 74 37 chr3 100898904 100899201 -58700582 + LTR33C LTR ERVL 17 324 -305 7 1354 515 303 116 17 chr3 100899240 100899421 -58700362 + LTR33C LTR ERVL 424 622 -7 7 1354 303 49 0 0 chr3 100899628 100899669 -58700114 + (CAAA)n Simple_repeat Simple_repeat 1 41 0 7 1354 353 263 121 28 chr3 100900600 100900741 -58699042 + RMER30 DNA MER1_type 1 154 -48 7 1354 466 246 18 23 chr3 100900860 100901012 -58698771 + B1F2 SINE Alu 9 149 0 7 1354 233 254 113 81 chr3 100901896 100902020 -58697763 + L2a LINE L2 3293 3420 -6 7 1354 773 191 31 3 chr3 100902444 100902773 -58697010 + (TG)n Simple_repeat Simple_repeat 1 338 0 7 1354 350 263 38 2 chr3 100904599 100904682 -58695101 + B1F1 SINE Alu 3 86 -63 7 1354 213 210 0 61 chr3 100904683 100904749 -58695034 + GA-rich Low_complexity Low_complexity 2 63 0 7 1354 222 343 20 10 chr3 100905383 100905483 -58694300 - MIRc SINE MIR -140 128 28 7 1354 413 246 110 32 chr3 100905556 100905720 -58694063 + MIR SINE MIR 53 225 -37 7 1354 378 281 115 2 chr3 100906571 100906730 -58693053 - MIRb SINE MIR -76 192 21 7 1354 303 267 0 0 chr3 100906872 100906947 -58692836 + ID4 SINE ID 2 76 -7 7 1354 194 170 0 54 chr3 100906947 100907003 -58692780 + T-rich Low_complexity Low_complexity 1 53 0 7 1354 682 287 43 0 chr3 100907028 100907192 -58692591 + B4A SINE B4 1 171 -121 7 1354 291 306 73 121 chr3 100907192 100907244 -58692539 + B3A SINE B2 1 205 -11 7 1354 200 111 28 0 chr3 100908197 100908233 -58691550 + (TTCC)n Simple_repeat Simple_repeat 2 38 0 7 1354 426 330 9 0 chr3 100908233 100908348 -58691435 - PB1D10 SINE Alu -1 116 1 7 1354 489 34 0 0 chr3 100909096 100909155 -58690628 + (TG)n Simple_repeat Simple_repeat 2 60 0 7 1354 230 269 209 0 chr3 100910217 100910284 -58689499 + ID4_ SINE ID 3 83 0 7 1354 297 0 0 0 chr3 100910284 100910317 -58689466 + (A)n Simple_repeat Simple_repeat 1 33 0 7 1354 502 290 121 59 chr3 100910374 100910736 -58689047 + MLT1J1 LTR MaLR 27 399 -49 7 1354 185 205 26 0 chr3 100912608 100912647 -58687136 - L4 LINE RTE -1194 835 796 7 1354 45 96 0 0 chr3 100913866 100914002 -58685781 + GC_rich Low_complexity Low_complexity 1 136 0 7 1354 218 109 0 42 chr3 100914084 100914132 -58685651 + CT-rich Low_complexity Low_complexity 1 46 0 7 1354 302 0 26 0 chr3 100914966 100915004 -58684779 + (GAAAA)n Simple_repeat Simple_repeat 2 40 0 7 1354 473 234 122 42 chr3 100915445 100915615 -58684168 + ID_B1 SINE B4 82 262 -30 7 1354 180 0 0 0 chr3 100917120 100917140 -58682643 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 7 1354 301 248 231 14 chr3 100917993 100918140 -58681643 + HAL1-3A_ME LINE L1 2289 2467 -391 7 1354 417 318 40 23 chr3 100918396 100918570 -58681213 - MER53 DNA hAT 0 193 17 7 1354 24 32 0 0 chr3 100919199 100919230 -58680553 + AT_rich Low_complexity Low_complexity 1 31 0 7 1354 524 262 95 140 chr3 100919443 100919643 -58680140 - B3A SINE B2 -15 201 11 7 1354 424 286 27 60 chr3 100919675 100919824 -58679959 - RSINE1 SINE B4 -11 154 11 7 1354 419 360 55 47 chr3 100920272 100920508 -58679275 + L4 LINE RTE 1381 1618 -411 7 1354 354 267 0 0 chr3 100921860 100921935 -58677848 - MIR3 SINE MIR -53 155 81 7 1354 1285 194 10 165 chr3 100922183 100922584 -58677199 + ORR1C1 LTR MaLR 1 339 -39 7 1354 13356 3 0 0 chr3 100922584 100924123 -58675660 + L1Md_A LINE L1 4048 5586 -297 7 1354 9220 2 0 0 chr3 100924123 100925119 -58674664 + L1Md_A LINE L1 5587 6582 0 7 1354 371 127 0 0 chr3 100925131 100925186 -58674597 + ORR1C1 LTR MaLR 330 384 0 7 1355 571 290 8 0 chr3 100925481 100925612 -58674171 + B4A SINE B4 97 228 -64 7 1355 798 264 0 21 chr3 100925612 100925798 -58673985 + B3A SINE B2 1 182 -16 7 1355 26 30 0 0 chr3 100925813 100925846 -58673937 + AT_rich Low_complexity Low_complexity 1 33 0 7 1355 215 352 41 71 chr3 100926314 100926510 -58673273 + MIR SINE MIR 13 209 -59 7 1355 2924 60 68 0 chr3 100926859 100927240 -58672543 - MTB_Mm LTR MaLR 0 407 1 7 1355 413 318 21 77 chr3 100927341 100927535 -58672248 + MLT1L LTR MaLR 99 281 -329 7 1355 278 67 0 22 chr3 100927573 100927619 -58672164 + (TTTTG)n Simple_repeat Simple_repeat 2 46 0 7 1355 538 253 130 21 chr3 100927641 100927879 -58671904 - L1ME1 LINE L1 -15 6164 5901 7 1355 364 224 59 39 chr3 100927880 100927982 -58671801 - ID_B1 SINE B4 0 224 121 7 1355 994 310 89 11 chr3 100927986 100928188 -58671595 - L1ME1 LINE L1 -320 5859 5648 7 1355 285 29 0 0 chr3 100928188 100928222 -58671561 + (TC)n Simple_repeat Simple_repeat 1 34 0 7 1355 994 283 98 7 chr3 100928222 100928592 -58671191 - L1ME1 LINE L1 -532 5647 5243 7 1355 251 257 186 0 chr3 100928592 100928662 -58671121 + ID4_ SINE ID 1 83 0 8 1355 616 292 6 64 chr3 100928770 100928942 -58670841 + RSINE1 SINE B4 4 165 0 8 1355 259 337 51 103 chr3 100928942 100928965 -58670818 + B3A SINE B2 3 187 -11 8 1355 233 245 62 21 chr3 100929555 100929651 -58670132 - L1ME1 LINE L1 -4626 1616 1517 7 1355 435 100 0 0 chr3 100930073 100930143 -58669640 + (TG)n Simple_repeat Simple_repeat 2 71 0 8 1355 473 318 50 41 chr3 100930177 100930397 -58669386 + RMER15 LTR ERVL 347 568 -7 8 1355 354 300 8 68 chr3 100931417 100931535 -58668248 - PB1D10 SINE Alu -3 114 4 8 1355 2367 153 5 5 chr3 100931560 100931927 -58667856 + ORR1B2 LTR MaLR 1 367 0 8 1355 423 0 0 0 chr3 100933464 100933511 -58666272 + (TC)n Simple_repeat Simple_repeat 2 48 0 8 1355 324 0 0 0 chr3 100933511 100933546 -58666237 + (TG)n Simple_repeat Simple_repeat 1 36 0 8 1355 418 274 70 9 chr3 100933617 100933731 -58666052 - RSINE1 SINE B4 -4 161 41 8 1355 471 300 56 12 chr3 100933721 100933883 -58665900 - B4A SINE B4 -123 169 1 8 1355 220 172 17 17 chr3 100934223 100934282 -58665501 + A-rich Low_complexity Low_complexity 2 60 0 8 1355 457 300 0 55 chr3 100935092 100935219 -58664564 + ID_B1 SINE B4 79 198 -26 8 1355 614 234 24 0 chr3 100935106 100935230 -58664553 + B1F SINE Alu 5 131 -18 8 1355 294 207 0 0 chr3 100935222 100935280 -58664503 + B1_Mus2 SINE Alu 64 121 -26 8 1355 458 204 0 21 chr3 100935269 100935364 -58664419 + B1F SINE Alu 57 149 0 8 1355 258 297 145 0 chr3 100935369 100935473 -58664310 + PB1D9 SINE Alu 1 117 -3 8 1355 253 271 8 83 chr3 100935566 100935699 -58664084 + L1MB3 LINE L1 5705 5827 -356 8 1355 402 241 11 24 chr3 100935701 100935822 -58663961 - B1F1 SINE Alu -8 141 6 8 1355 597 272 103 35 chr3 100935825 100936107 -58663676 + L1MB3 LINE L1 5847 6147 -36 8 1355 1256 103 0 3 chr3 100936148 100936500 -58663283 + (GAA)n Simple_repeat Simple_repeat 1 350 0 8 1355 444 211 33 99 chr3 100936814 100936935 -58662848 - PB1D10 SINE Alu -2 115 3 8 1355 651 328 61 20 chr3 100936935 100937231 -58662552 - ORR1E LTR MaLR -51 308 1 8 1355 215 250 85 73 chr3 100937303 100937385 -58662398 - ID4 SINE ID 0 83 1 8 1355 513 241 26 35 chr3 100937416 100937532 -58662251 - PB1D7 SINE Alu 0 120 6 8 1355 589 123 19 0 chr3 100937532 100937638 -58662145 + (TCTCCC)n Simple_repeat Simple_repeat 5 112 0 8 1355 186 43 0 0 chr3 100938455 100938478 -58661305 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 8 1355 742 181 15 29 chr3 100938481 100938618 -58661165 - B1_Mur1 SINE Alu -13 136 2 8 1355 772 219 9 121 chr3 100939707 100939930 -58659853 + B3A SINE B2 1 198 0 8 1355 270 136 0 0 chr3 100941371 100941415 -58658368 + (TAA)n Simple_repeat Simple_repeat 2 45 0 8 1355 1920 290 56 65 chr3 100941417 100942509 -58657274 + L1M2 LINE L1 4309 5390 -753 8 1355 1097 71 0 21 chr3 100942512 100942656 -58657127 + B1_Mus2 SINE Alu 7 147 0 8 1355 579 217 89 74 chr3 100942682 100942941 -58656842 + L1M2 LINE L1 5352 5617 -566 8 1355 220 320 96 47 chr3 100942988 100943177 -58656606 - L2a LINE L2 -5 3421 3181 8 1355 931 262 104 48 chr3 100943177 100943513 -58656270 + ORR1E LTR MaLR 4 358 -1 8 1355 208 351 109 66 chr3 100943513 100943716 -58656067 - L2a LINE L2 -195 3180 2961 8 1355 243 260 157 20 chr3 100943946 100944048 -58655735 - MIR SINE MIR -27 235 120 8 1355 540 260 51 33 chr3 100944143 100944358 -58655425 - MLT1G1 LTR MaLR -355 224 6 8 1355 795 217 90 10 chr3 100944918 100945118 -58654665 + B3 SINE B2 1 216 0 8 1355 222 37 0 0 chr3 100946236 100946263 -58653520 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 8 1355 377 281 10 0 chr3 100946378 100946474 -58653309 + MER96 DNA hAT 4 100 -75 8 1355 991 183 64 5 chr3 100946503 100946706 -58653077 + B3 SINE B2 2 216 0 8 1355 234 0 0 0 chr3 100947847 100947873 -58651910 + (GGGTG)n Simple_repeat Simple_repeat 1 26 0 8 1355 181 233 0 23 chr3 100948093 100948137 -58651646 + MIRb SINE MIR 226 268 0 8 1355 387 0 0 0 chr3 100949795 100949838 -58649945 + (CA)n Simple_repeat Simple_repeat 1 43 0 8 1355 473 0 18 0 chr3 100951005 100951062 -58648721 + (TG)n Simple_repeat Simple_repeat 2 59 0 8 1355 198 365 42 0 chr3 100951249 100951345 -58648438 - MIRb SINE MIR -119 149 50 8 1355 228 167 111 0 chr3 100951589 100951643 -58648140 + MLT1J LTR MaLR 391 450 -62 8 1355 768 367 40 25 chr3 100952023 100952470 -58647313 + MLT1J-int LTR MaLR 480 933 -454 8 1355 350 184 92 0 chr3 100952669 100952748 -58647035 + MLT1A0 LTR MaLR 2 88 -320 8 1355 341 263 126 0 chr3 100952748 100952843 -58646940 - RMER30 DNA MER1_type -1 201 95 8 1355 252 312 88 27 chr3 100953007 100953155 -58646628 - MLT1F LTR MaLR -51 497 341 8 1355 439 306 7 27 chr3 100953180 100953328 -58646455 + MLT1A0 LTR MaLR 218 362 -3 8 1355 602 192 0 0 chr3 100953326 100953430 -58646353 + B1_Mm SINE Alu 1 104 -43 8 1355 325 292 116 7 chr3 100953334 100953472 -58646311 + B4A SINE B4 94 246 -46 8 1355 499 163 6 18 chr3 100953473 100953644 -58646139 + GA-rich Low_complexity Low_complexity 1 168 0 8 1355 246 296 10 39 chr3 100953736 100953838 -58645945 + MLT1J-int LTR MaLR 1288 1386 -1 8 1355 268 310 59 10 chr3 100953890 100953991 -58645792 - B1_Mur2 SINE Alu -7 142 37 8 1355 192 77 0 0 chr3 100954925 100954951 -58644832 + (TG)n Simple_repeat Simple_repeat 2 27 0 8 1355 2952 124 29 2 chr3 100955774 100956227 -58643556 - RMER4A LTR ERVK -1 465 1 8 1355 360 0 0 0 chr3 100956379 100956419 -58643364 + (CA)n Simple_repeat Simple_repeat 2 41 0 8 1355 1113 183 39 5 chr3 100956495 100956698 -58643085 - B3 SINE B2 -5 211 2 8 1355 243 386 29 0 chr3 100956699 100956839 -58642944 - L2a LINE L2 -282 3144 3001 8 1355 1047 218 161 33 chr3 100956844 100956988 -58642795 - MTEa LTR MaLR 0 379 210 8 1355 951 78 0 0 chr3 100956988 100957117 -58642666 + (GA)n Simple_repeat Simple_repeat 2 130 0 8 1355 1047 218 161 33 chr3 100957117 100957308 -58642475 - MTEa LTR MaLR -170 209 1 8 1355 1127 214 68 17 chr3 100957308 100957603 -58642180 - MTEa-int LTR MaLR 0 1580 1271 8 1355 922 139 7 0 chr3 100957615 100957759 -58642024 + B1_Mur4 SINE Alu 5 149 -1 8 1355 198 174 0 0 chr3 100957760 100957806 -58641977 + A-rich Low_complexity Low_complexity 1 46 0 8 1355 2012 294 74 41 chr3 100957809 100958596 -58641187 - MTEa-int LTR MaLR -308 1272 460 8 1355 189 0 0 0 chr3 100958603 100958624 -58641159 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 8 1355 1082 219 83 0 chr3 100958690 100958955 -58640828 + MTD LTR MaLR 130 416 -3 8 1355 247 257 0 125 chr3 100958938 100958977 -58640806 - B4A SINE B4 -221 71 38 8 1355 1714 155 209 3 chr3 100958977 100959326 -58640457 - MTC LTR MaLR 0 421 1 8 1355 247 257 0 125 chr3 100959326 100959366 -58640417 - B4A SINE B4 -255 37 2 8 1355 600 322 70 37 chr3 100959850 100960253 -58639530 - RMER5 LTR ERV1 -71 463 48 8 1355 192 179 0 0 chr3 100960887 100960926 -58638857 + (ATG)n Simple_repeat Simple_repeat 3 41 0 8 1355 207 299 10 30 chr3 100961536 100961636 -58638147 + CT-rich Low_complexity Low_complexity 3 100 0 8 1355 843 274 74 57 chr3 100961751 100961790 -58637993 - Lx8 LINE L1 -97 7376 7338 8 1355 180 0 0 0 chr3 100961790 100961810 -58637973 + (TTG)n Simple_repeat Simple_repeat 2 21 0 8 1355 843 274 74 57 chr3 100961810 100962068 -58637715 - Lx8 LINE L1 -136 7337 7074 8 1355 2032 254 142 40 chr3 100962167 100963077 -58636706 - Lx8 LINE L1 -385 7088 6086 8 1355 319 338 126 21 chr3 100963467 100963706 -58636077 + L1MC4 LINE L1 6958 7221 -821 8 1355 2063 148 123 5 chr3 100964009 100964382 -58635401 - MTC LTR MaLR -4 417 1 8 1355 426 229 70 21 chr3 100964788 100964931 -58634852 + MER97c DNA MER1_type? 19 168 -922 8 1355 322 323 23 30 chr3 100966279 100966410 -58633373 + MLT1N2 LTR MaLR 433 562 0 8 1355 294 29 0 0 chr3 100966455 100966490 -58633293 + (TG)n Simple_repeat Simple_repeat 1 35 0 8 1355 378 0 0 0 chr3 100966490 100966531 -58633252 + (GA)n Simple_repeat Simple_repeat 1 42 0 8 1355 632 237 23 96 chr3 100968078 100968297 -58631486 - B4A SINE B4 -82 210 8 8 1355 210 262 129 12 chr3 100968550 100968635 -58631148 - MIRb SINE MIR -53 215 121 8 1355 350 280 184 0 chr3 100969111 100969236 -58630547 - MTD LTR MaLR -36 383 236 8 1355 337 301 121 6 chr3 100969369 100969526 -58630257 + LTR16A LTR ERVL 210 384 -67 8 1355 189 0 0 0 chr3 100969563 100969584 -58630199 + (TG)n Simple_repeat Simple_repeat 2 22 0 8 1355 277 298 43 74 chr3 100969862 100970025 -58629758 + LTR48 LTR ERV1 2 159 -628 8 1355 302 225 37 12 chr3 100971013 100971094 -58628689 + PB1D10 SINE Alu 1 83 -34 8 1355 384 301 14 35 chr3 100971088 100971229 -58628554 + ID_B1 SINE B4 83 220 -4 8 1355 227 262 131 0 chr3 100971299 100971360 -58628423 + ID2 SINE ID 8 76 -7 8 1355 419 216 0 0 chr3 100971580 100971668 -58628115 - B1F SINE Alu -36 113 26 8 1355 2346 166 57 84 chr3 100971742 100972340 -58627443 - RLTR18 LTR ERVK -2 614 33 8 1355 526 213 23 11 chr3 100973116 100973292 -58626491 + GA-rich Low_complexity Low_complexity 3 180 0 8 1355 474 61 0 0 chr3 100973538 100973604 -58626179 + (CA)n Simple_repeat Simple_repeat 2 67 0 8 1355 189 0 0 0 chr3 100974550 100974571 -58625212 + (TTTA)n Simple_repeat Simple_repeat 4 24 0 8 1355 272 244 128 0 chr3 100974593 100974679 -58625104 - PB1D10 SINE Alu -17 100 4 8 1355 1158 334 57 44 chr3 100975518 100976158 -58623625 + L1_Rod LINE L1 1550 2196 -3651 8 1355 230 0 33 0 chr3 100976158 100976188 -58623595 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 8 1355 1158 334 57 44 chr3 100976188 100976471 -58623312 + L1_Rod LINE L1 2197 2485 -3362 8 1355 1099 231 43 143 chr3 100976505 100976760 -58623023 - ORR1D2 LTR MaLR -4 366 157 8 1355 847 155 35 0 chr3 100976760 100976902 -58622881 - B1_Mur3 SINE Alu 0 149 3 8 1355 1099 231 43 143 chr3 100976902 100977045 -58622738 - ORR1D2 LTR MaLR -214 156 8 8 1355 3694 308 85 56 chr3 100977112 100979245 -58620538 + Lx8 LINE L1 2524 4712 -1168 8 1355 1079 94 0 3 chr3 100979245 100979588 -58620195 + (CCA)n Simple_repeat Simple_repeat 1 341 0 8 1355 4439 286 84 53 chr3 100979588 100981392 -58618391 + Lx8 LINE L1 4713 6583 -890 8 1355 1664 179 197 111 chr3 100981392 100981810 -58617973 - RMER6D LTR ERVK 0 720 343 8 1355 549 0 0 0 chr3 100981810 100981871 -58617912 + (AACTG)n Simple_repeat Simple_repeat 5 65 0 8 1355 1664 179 197 111 chr3 100981871 100982112 -58617671 - RMER6D LTR ERVK -378 342 4 8 1355 4439 267 83 50 chr3 100982112 100982460 -58617323 + Lx8 LINE L1 6584 6948 -525 8 1355 396 0 0 0 chr3 100982460 100982504 -58617279 + (CA)n Simple_repeat Simple_repeat 2 45 0 9 1355 4439 267 83 50 chr3 100982504 100982517 -58617266 + Lx8 LINE L1 6949 6961 -512 8 1355 387 0 0 0 chr3 100982517 100982560 -58617223 + (GA)n Simple_repeat Simple_repeat 1 43 0 9 1355 4439 267 83 50 chr3 100982560 100982842 -58616941 + Lx8 LINE L1 6962 7259 -214 8 1355 279 130 0 0 chr3 100983149 100983203 -58616580 + (CAGA)n Simple_repeat Simple_repeat 1 54 0 9 1355 465 281 178 21 chr3 100983718 100983954 -58615829 - B4 SINE B4 -19 273 1 9 1355 572 317 25 30 chr3 100984274 100984511 -58615272 + MER2 DNA MER2_type 26 261 -84 9 1355 292 219 0 99 chr3 100984517 100984598 -58615185 - ID4 SINE ID 0 83 11 9 1355 258 263 18 0 chr3 100984610 100984667 -58615116 + MER2 DNA MER2_type 263 320 -25 9 1355 480 111 0 0 chr3 100984696 100984786 -58614997 + (CA)n Simple_repeat Simple_repeat 2 91 0 9 1355 366 290 64 18 chr3 100984892 100985001 -58614782 - B1F SINE Alu -35 114 1 9 1355 249 281 0 0 chr3 100985016 100985073 -58614710 - MIR SINE MIR -93 169 113 9 1355 1564 133 0 22 chr3 100985767 100985998 -58613785 - URR1A DNA MER1_type 0 226 1 9 1355 404 282 147 11 chr3 100986245 100986435 -58613348 + MIRc SINE MIR 32 247 -21 9 1355 1153 257 68 40 chr3 100986575 100986683 -58613100 + MTEa LTR MaLR 18 120 -259 9 1355 2130 118 38 0 chr3 100986683 100986998 -58612785 + ORR1A2 LTR MaLR 1 327 0 9 1355 1153 257 68 40 chr3 100986998 100987241 -58612542 + MTEa LTR MaLR 121 379 0 9 1355 1186 269 39 9 chr3 100987250 100987584 -58612199 + MTEa-int LTR MaLR 10 353 -1227 9 1355 980 251 99 23 chr3 100987575 100987917 -58611866 + MTEa-int LTR MaLR 1209 1576 -4 9 1355 346 286 0 0 chr3 100987924 100988001 -58611782 + MTEa LTR MaLR 4 80 -299 9 1355 1432 156 29 18 chr3 100988087 100988270 -58611513 + ORR1D1 LTR MaLR 1 183 -191 9 1355 346 35 0 65 chr3 100988270 100988332 -58611451 + (TCTCTG)n Simple_repeat Simple_repeat 3 60 0 9 1355 1432 156 29 18 chr3 100988332 100988421 -58611362 + ORR1D1 LTR MaLR 184 276 -98 9 1355 2132 178 26 21 chr3 100988421 100988639 -58611144 - MTC LTR MaLR 0 421 205 9 1355 3237 152 68 54 chr3 100988639 100989320 -58610463 - RMER6C LTR ERVK 0 690 1 9 1355 2132 178 26 21 chr3 100989320 100989520 -58610263 - MTC LTR MaLR -217 204 1 9 1355 412 231 9 9 chr3 100989520 100989621 -58610162 + ORR1D1 LTR MaLR 272 372 -2 9 1355 244 295 159 33 chr3 100989978 100990160 -58609623 - LTR41B LTR ERVL -553 205 1 9 1355 331 325 95 35 chr3 100990703 100991050 -58608733 + MLT1F LTR MaLR 5 375 -220 9 1355 342 326 81 18 chr3 100991020 100991242 -58608541 + MLT1F LTR MaLR 288 523 -25 9 1355 1536 221 88 8 chr3 100991733 100992117 -58607666 + MTD LTR MaLR 5 419 0 9 1355 869 221 31 62 chr3 100992288 100992515 -58607268 - ID_B1 SINE B4 0 224 5 9 1355 378 0 0 0 chr3 100992557 100992599 -58607184 + (TG)n Simple_repeat Simple_repeat 2 43 0 9 1355 452 296 439 0 chr3 100992611 100992790 -58606993 - B4A SINE B4 -34 258 1 9 1355 1494 240 27 5 chr3 100992970 100993339 -58606444 - MTE2b LTR MaLR -2 377 1 9 1355 368 309 0 0 chr3 100993808 100993902 -58605881 + RSINE1 SINE B4 67 160 -5 9 1355 313 286 33 77 chr3 100994428 100994609 -58605174 - LTR48 LTR ERV1 -62 725 553 9 1355 630 224 22 7 chr3 100994609 100994744 -58605039 + ORR1E LTR MaLR 1 137 -222 9 1355 354 291 170 5 chr3 100994790 100995014 -58604769 - LTR48 LTR ERV1 -510 277 17 9 1355 312 339 109 76 chr3 100995032 100995389 -58604394 + MLT1J2 LTR MaLR 67 435 -13 9 1355 711 282 109 13 chr3 100995767 100996080 -58603703 + MER34A1 LTR ERV1 1 343 -244 9 1355 1380 296 29 101 chr3 100996349 100997045 -58602738 + L1M2 LINE L1 4613 5285 -858 9 1355 799 146 57 28 chr3 100997045 100997186 -58602597 + B1_Mm SINE Alu 2 146 -1 9 1355 1380 303 51 49 chr3 100997186 100997688 -58602095 + L1M2 LINE L1 5286 5766 -534 9 1355 252 308 34 8 chr3 100997695 100997813 -58601970 + MLT1A1 LTR MaLR 286 406 -2 9 1355 682 234 67 10 chr3 100997813 100998002 -58601781 + MER34A1 LTR ERV1 388 587 0 9 1355 258 345 142 6 chr3 100998045 100998214 -58601569 + L3 LINE CR1 4059 4250 -239 9 1355 206 103 0 0 chr3 100999102 100999131 -58600652 + (TCTG)n Simple_repeat Simple_repeat 3 31 0 9 1355 649 168 0 11 chr3 100999131 100999312 -58600471 + (TG)n Simple_repeat Simple_repeat 2 180 0 9 1355 288 0 0 0 chr3 100999367 100999399 -58600384 + (TG)n Simple_repeat Simple_repeat 1 32 0 9 1355 422 247 332 0 chr3 100999402 100999592 -58600191 - B4A SINE B4 -39 253 1 9 1355 216 143 0 0 chr3 101000163 101000205 -58599578 + (TCCCC)n Simple_repeat Simple_repeat 4 45 0 1 1355 307 313 129 0 chr3 101000242 101000389 -58599394 - L1MB8 LINE L1 -314 5864 5699 2 1355 1622 142 119 62 chr3 101000455 101000638 -58599145 + ORR1D1 LTR MaLR 3 188 -186 3 1355 504 0 0 0 chr3 101000638 101000694 -58599089 + (TC)n Simple_repeat Simple_repeat 2 57 0 4 1355 1622 142 119 62 chr3 101000694 101000862 -58598921 + ORR1D1 LTR MaLR 189 374 0 3 1355 439 245 48 48 chr3 101001008 101001154 -58598629 + RMER30 DNA MER1_type 1 146 -56 5 1355 2440 276 57 31 chr3 101001156 101001964 -58597819 + Lx9 LINE L1 6366 7194 -450 6 1355 530 257 114 77 chr3 101002074 101002478 -58597305 - L1M5 LINE L1 -1313 4833 4415 7 1355 264 323 0 0 chr3 101002480 101002545 -58597238 - tRNA-Ala-GCA tRNA tRNA -8 67 3 8 1355 231 278 186 0 chr3 101002626 101002723 -58597060 + PB1D10 SINE Alu 3 117 0 9 1355 456 284 94 102 chr3 101002763 101003124 -58596659 + MLT1A0 LTR MaLR 1 358 -7 1 1355 425 310 140 52 chr3 101003283 101003647 -58596136 - L1M5 LINE L1 -2137 4009 3614 7 1355 392 316 68 59 chr3 101003780 101004002 -58595781 - L1M5 LINE L1 -2727 3419 3196 7 1355 365 326 0 0 chr3 101004219 101004311 -58595472 + B4A SINE B4 27 118 -174 1 1355 372 232 43 21 chr3 101004437 101004463 -58595320 + (CA)n Simple_repeat Simple_repeat 1 25 0 1 1355 494 119 12 0 chr3 101004463 101004547 -58595236 + (TA)n Simple_repeat Simple_repeat 1 85 0 1 1355 372 232 43 21 chr3 101004547 101004661 -58595122 + (CA)n Simple_repeat Simple_repeat 2 120 0 1 1355 519 183 28 6 chr3 101004677 101004853 -58594930 + (CA)n Simple_repeat Simple_repeat 1 180 0 1 1355 1140 268 74 46 chr3 101004882 101005598 -58594185 - L1M5 LINE L1 -3137 3009 2274 7 1355 450 0 0 0 chr3 101005599 101005649 -58594134 + (TG)n Simple_repeat Simple_repeat 1 50 0 1 1355 408 296 191 44 chr3 101005676 101005927 -58593856 - B4A SINE B4 -2 290 3 1 1355 180 0 0 0 chr3 101006251 101006271 -58593512 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 1 1355 229 261 62 0 chr3 101006989 101007054 -58592729 + L2a LINE L2 3354 3422 -4 1 1355 220 379 42 10 chr3 101007052 101007148 -58592635 - MIRc SINE MIR -117 151 53 1 1355 282 316 10 20 chr3 101007330 101007430 -58592353 - ORR1E LTR MaLR -42 317 219 2 1355 3281 204 112 51 chr3 101007538 101007735 -58592048 - Lx7 LINE L1 0 7696 7443 2 1355 410 0 20 0 chr3 101007735 101007785 -58591998 + (CA)n Simple_repeat Simple_repeat 2 52 0 2 1355 3281 204 112 51 chr3 101007785 101008429 -58591354 - Lx7 LINE L1 -254 7442 6805 2 1355 582 244 61 0 chr3 101008500 101008631 -58591152 - B1_Mur1 SINE Alu -1 148 10 2 1355 22 57 0 19 chr3 101008640 101008652 -58591131 + AT_rich Low_complexity Low_complexity 1 12 0 2 1355 1041 165 64 10 chr3 101008652 101008676 -58591107 - B3 SINE B2 -3 213 188 2 1355 441 0 0 0 chr3 101008676 101008725 -58591058 + (TA)n Simple_repeat Simple_repeat 2 50 0 2 1355 1041 165 64 10 chr3 101008725 101008902 -58590881 - B3 SINE B2 -29 187 2 2 1355 22 57 0 19 chr3 101008902 101008943 -58590840 + AT_rich Low_complexity Low_complexity 1 41 0 2 1355 7663 66 23 8 chr3 101009172 101009823 -58589960 + RLTR13D5 LTR ERVK 1 661 -362 2 1355 306 0 0 0 chr3 101009823 101009857 -58589926 + (TG)n Simple_repeat Simple_repeat 2 35 0 2 1355 7663 66 23 8 chr3 101009857 101010206 -58589577 + RLTR13D5 LTR ERVK 662 1014 -9 2 1355 227 254 0 69 chr3 101010271 101010343 -58589440 + LTR33A LTR ERVL 62 128 -392 3 1355 397 197 26 0 chr3 101010280 101010356 -58589427 + MLT1J LTR MaLR 100 177 -335 3 1355 475 252 35 0 chr3 101010523 101010638 -58589145 - B1F SINE Alu 0 149 31 3 1355 225 0 0 0 chr3 101011323 101011348 -58588435 + (C)n Simple_repeat Simple_repeat 1 25 0 3 1355 408 317 0 19 chr3 101011402 101011508 -58588275 - PB1D10 SINE Alu -1 116 13 3 1355 469 315 40 0 chr3 101011636 101011836 -58587947 - L1MB7 LINE L1 -274 5910 5703 3 1355 423 56 0 0 chr3 101011845 101011899 -58587884 + (TA)n Simple_repeat Simple_repeat 2 55 0 3 1355 24 0 0 0 chr3 101011914 101011938 -58587845 + AT_rich Low_complexity Low_complexity 1 24 0 3 1355 512 284 118 5 chr3 101011938 101012133 -58587650 - L1MB7 LINE L1 -579 5605 5389 3 1355 482 0 17 0 chr3 101012352 101012410 -58587373 + (TAAAA)n Simple_repeat Simple_repeat 4 62 0 3 1355 344 299 83 72 chr3 101012584 101012836 -58586947 - MTEb LTR MaLR -5 374 122 3 1355 818 266 141 0 chr3 101013335 101013625 -58586158 - L1MC1 LINE L1 -171 6162 5832 4 1355 251 338 134 0 chr3 101013627 101013769 -58586014 - L2 LINE L2 -2451 968 808 4 1355 603 329 109 37 chr3 101014074 101014396 -58585387 - ORR1E LTR MaLR -4 355 11 4 1355 1061 97 14 14 chr3 101014812 101014958 -58584825 + B1_Mus2 SINE Alu 1 146 -1 4 1355 296 211 0 106 chr3 101015000 101015085 -58584698 - B3 SINE B2 -6 210 135 4 1355 293 224 17 0 chr3 101015458 101015516 -58584267 - MTEb LTR MaLR -315 64 6 3 1355 200 59 29 0 chr3 101016214 101016248 -58583535 + (CCCCCA)n Simple_repeat Simple_repeat 2 36 0 4 1355 214 167 0 32 chr3 101017669 101017731 -58582052 + CT-rich Low_complexity Low_complexity 4 63 0 4 1355 287 312 0 12 chr3 101017743 101017824 -58581959 + C-rich Low_complexity Low_complexity 4 83 0 4 1355 241 346 87 87 chr3 101018009 101018332 -58581451 - L4 LINE RTE 0 2029 1707 4 1355 468 307 131 58 chr3 101018442 101018770 -58581013 - L3 LINE CR1 -441 4048 3697 4 1355 267 220 59 35 chr3 101018822 101018907 -58580876 - Kanga1a DNA Tc2 0 754 668 5 1355 1188 226 84 42 chr3 101018921 101019276 -58580507 + ORR1D2 LTR MaLR 1 370 0 5 1355 249 293 78 26 chr3 101019329 101019406 -58580377 + MT2B2 LTR ERVL 161 241 -343 5 1355 514 295 82 0 chr3 101019341 101019463 -58580320 + B1F SINE Alu 12 143 -6 5 1355 458 246 66 73 chr3 101019473 101019609 -58580174 + B3A SINE B2 2 136 -62 5 1355 1025 58 0 7 chr3 101019609 101019669 -58580114 + (TTC)n Simple_repeat Simple_repeat 3 62 0 5 1355 1379 45 11 0 chr3 101019669 101019847 -58579936 + (TCTCCC)n Simple_repeat Simple_repeat 1 180 0 5 1355 1025 58 0 7 chr3 101019847 101019924 -58579859 + (TTC)n Simple_repeat Simple_repeat 1 77 0 5 1355 705 35 0 0 chr3 101019941 101020026 -58579757 - B1_Mus2 SINE Alu -9 138 54 5 1355 405 279 20 9 chr3 101021403 101021528 -58578255 - MLT1A1 LTR MaLR -215 150 25 5 1355 2186 148 20 8 chr3 101021528 101021882 -58577901 + ORR1B2 LTR MaLR 2 359 -8 6 1355 270 0 0 0 chr3 101022303 101022333 -58577450 + (CA)n Simple_repeat Simple_repeat 1 30 0 6 1355 334 288 57 9 chr3 101022493 101022598 -58577185 + MLT1A0 LTR MaLR 1 110 -255 6 1355 795 285 61 25 chr3 101022767 101023044 -58576739 - MLT1A0 LTR MaLR -4 361 75 6 1355 270 260 25 49 chr3 101023155 101023236 -58576547 + ID4_ SINE ID 5 83 0 6 1355 279 54 0 0 chr3 101023400 101023437 -58576346 + (A)n Simple_repeat Simple_repeat 1 37 0 6 1355 826 259 5 25 chr3 101023941 101024143 -58575640 - B3A SINE B2 0 198 1 6 1355 1349 160 87 142 chr3 101024815 101025173 -58574610 + ORR1C2 LTR MaLR 33 370 -14 6 1355 258 159 43 0 chr3 101025902 101025971 -58573812 + (TA)n Simple_repeat Simple_repeat 2 73 0 6 1355 739 268 45 72 chr3 101026071 101026361 -58573422 - L1MA4 LINE L1 -229 5942 5661 6 1355 219 311 35 104 chr3 101026370 101026485 -58573298 - PB1 SINE Alu -20 107 1 7 1355 660 296 57 0 chr3 101026485 101026558 -58573225 - ID_B1 SINE B4 -134 90 8 7 1355 678 290 64 8 chr3 101026593 101026825 -58572958 - L1MA4 LINE L1 -705 5595 5332 6 1355 351 0 0 0 chr3 101026862 101026901 -58572882 + (TG)n Simple_repeat Simple_repeat 2 40 0 7 1355 257 264 11 0 chr3 101027049 101027140 -58572643 - L1MA4 LINE L1 -776 5388 5297 6 1355 1914 150 59 0 chr3 101027154 101027474 -58572309 - MTC LTR MaLR 0 421 83 7 1355 309 66 0 47 chr3 101027472 101027536 -58572247 - B2_Mm2 SINE B2 -1 194 134 7 1355 358 214 95 0 chr3 101027521 101027605 -58572178 - MTC LTR MaLR -324 97 6 7 1355 693 311 186 24 chr3 101027606 101028101 -58571682 - L1MA4 LINE L1 -858 5285 4711 6 1355 1961 109 38 88 chr3 101028131 101028504 -58571279 + ORR1B1 LTR MaLR 41 394 0 7 1355 715 189 7 47 chr3 101028854 101029004 -58570779 + B1_Mur3 SINE Alu 2 145 -4 7 1355 1266 99 15 40 chr3 101029027 101029227 -58570556 + B2_Mm2 SINE B2 1 195 0 7 1355 402 265 18 12 chr3 101029275 101029443 -58570340 + L1M3 LINE L1 3120 3288 -2852 7 1355 302 231 0 0 chr3 101029482 101029534 -58570249 + ID4_ SINE ID 32 83 0 7 1355 1011 239 12 66 chr3 101029574 101029906 -58569877 - L1MA4 LINE L1 -1467 4676 4363 6 1355 1036 200 184 49 chr3 101029976 101030302 -58569481 + ORR1D2 LTR MaLR 1 370 0 8 1355 595 303 29 29 chr3 101030734 101030904 -58568879 - MER20 DNA MER1_type -49 170 1 8 1355 843 196 0 13 chr3 101031425 101031575 -58568208 + B1_Mur2 SINE Alu 1 148 -1 8 1355 528 16 0 0 chr3 101031622 101031683 -58568100 + (TTTC)n Simple_repeat Simple_repeat 3 63 0 8 1355 754 177 77 0 chr3 101031693 101031823 -58567960 + B1_Mur4 SINE Alu 1 140 -10 8 1355 369 0 0 0 chr3 101031823 101031864 -58567919 + (TA)n Simple_repeat Simple_repeat 1 41 0 8 1355 351 0 0 0 chr3 101031864 101031902 -58567881 + (GA)n Simple_repeat Simple_repeat 2 40 0 8 1355 754 234 122 0 chr3 101031902 101032090 -58567693 - B3 SINE B2 -4 212 2 8 1355 436 213 11 0 chr3 101033182 101033276 -58566507 + Lx9 LINE L1 6940 7034 -610 8 1355 228 232 17 67 chr3 101033345 101033405 -58566378 + PB1D9 SINE Alu 64 120 0 8 1355 657 88 11 0 chr3 101033973 101034064 -58565719 - URR1B DNA MER1_type 0 225 134 9 1355 228 277 125 29 chr3 101034337 101034441 -58565342 + PB1D7 SINE Alu 5 118 -2 9 1355 212 321 24 12 chr3 101034536 101034621 -58565162 + GA-rich Low_complexity Low_complexity 2 87 0 9 1355 220 310 0 17 chr3 101034557 101034616 -58565167 + G-rich Low_complexity Low_complexity 1 58 0 9 1355 268 161 191 16 chr3 101034957 101035020 -58564763 - PB1D7 SINE Alu 0 120 47 9 1355 888 74 0 0 chr3 101035056 101035177 -58564606 + (GAAA)n Simple_repeat Simple_repeat 1 121 0 9 1355 348 356 79 28 chr3 101035285 101035398 -58564385 + HAL1 LINE L1 1502 1615 -892 9 1355 465 34 0 0 chr3 101035398 101035457 -58564326 + (TC)n Simple_repeat Simple_repeat 1 59 0 9 1355 348 356 79 28 chr3 101035457 101035597 -58564186 + HAL1 LINE L1 1616 1768 -739 9 1355 315 71 0 0 chr3 101035643 101035685 -58564098 + (AGGGGG)n Simple_repeat Simple_repeat 5 46 0 9 1355 823 224 25 30 chr3 101035796 101035994 -58563789 - B3A SINE B2 0 198 2 9 1355 284 245 168 24 chr3 101035999 101036166 -58563617 + HAL1 LINE L1 2102 2292 -215 9 1355 273 297 98 10 chr3 101036202 101036304 -58563479 + PB1D9 SINE Alu 10 120 0 1 1355 912 137 206 37 chr3 101036953 101037142 -58562641 - URR1A DNA MER1_type -1 225 5 1 1355 846 151 84 13 chr3 101038283 101038437 -58561346 + URR1A DNA MER1_type 62 226 0 1 1355 463 281 138 20 chr3 101038437 101038484 -58561299 - CYRA11_Mm Unknown Y-chromosome -433 184 115 1 1355 389 171 125 0 chr3 101039081 101039169 -58560614 - PB1D10 SINE Alu -17 100 2 1 1355 504 220 62 133 chr3 101039492 101039702 -58560081 + B3A SINE B2 2 196 -2 1 1355 26 30 0 0 chr3 101039744 101039777 -58560006 + AT_rich Low_complexity Low_complexity 1 33 0 1 1355 287 49 24 0 chr3 101039783 101039824 -58559959 + (TG)n Simple_repeat Simple_repeat 1 42 0 1 1355 476 250 10 0 chr3 101039843 101039943 -58559840 - RSINE1 SINE B4 -61 104 4 1 1355 194 189 50 67 chr3 101041236 101041316 -58558467 - L2c LINE L2 -4 3422 3332 1 1355 200 265 0 0 chr3 101041686 101041735 -58558048 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 1355 2571 168 13 108 chr3 101041790 101042153 -58557630 + RLTR18B LTR ERVK 1 327 -185 1 1355 1710 16 0 0 chr3 101042153 101042341 -58557442 - B2_Mm1a SINE B2 -5 188 1 1 1355 2571 168 13 108 chr3 101042341 101042523 -58557260 + RLTR18B LTR ERVK 328 494 -18 1 1355 631 359 87 62 chr3 101043251 101043667 -58556116 + LTR16D1 LTR ERVL 12 437 -238 1 1355 792 155 31 6 chr3 101043814 101043976 -58555807 - Lx LINE L1 -2 6652 6487 1 1355 277 322 131 17 chr3 101044242 101044586 -58555197 - L1MEd LINE L1 -4650 1575 1193 1 1355 267 345 97 66 chr3 101044664 101045045 -58554738 + LTR79 LTR ERVL 84 476 -51 1 1355 230 235 112 47 chr3 101045156 101045263 -58554520 - L1MEd LINE L1 -5025 1094 981 1 1355 1100 71 7 0 chr3 101045364 101045504 -58554279 + B1_Mm SINE Alu 1 141 -6 1 1355 272 27 27 0 chr3 101045506 101045543 -58554240 + (CAA)n Simple_repeat Simple_repeat 2 39 0 1 1355 396 287 92 22 chr3 101045558 101045743 -58554040 - L1MEd LINE L1 -5322 797 600 1 1355 624 249 5 81 chr3 101046471 101046668 -58553115 + B3A SINE B2 1 182 -16 1 1355 313 153 28 0 chr3 101046668 101046740 -58553043 + (CA)n Simple_repeat Simple_repeat 1 74 0 1 1355 600 245 29 0 chr3 101047003 101047142 -58552641 + MLT1N2 LTR MaLR 419 561 -1 1 1355 303 28 0 0 chr3 101047415 101047451 -58552332 + (TG)n Simple_repeat Simple_repeat 2 37 0 1 1355 6527 62 5 26 chr3 101047750 101048590 -58551193 - RLTR13B2 LTR ERVK 0 822 1 1 1355 646 257 0 27 chr3 101050048 101050196 -58549587 + B1_Mur1 SINE Alu 6 149 0 1 1355 231 208 0 36 chr3 101050196 101050251 -58549532 + GA-rich Low_complexity Low_complexity 3 55 0 1 1355 26 0 0 0 chr3 101050449 101050475 -58549308 + AT_rich Low_complexity Low_complexity 1 26 0 1 1355 384 289 118 52 chr3 101050561 101050773 -58549010 + MER34 LTR ERV1 334 571 0 1 1355 232 221 76 119 chr3 101050810 101050928 -58548855 - MER34A1 LTR ERV1 -396 191 79 1 1355 310 275 76 84 chr3 101051690 101051701 -58548082 - PB1D9 SINE Alu -1 119 93 1 1355 415 200 13 0 chr3 101051701 101051776 -58548007 - ID_B1 SINE B4 -8 216 141 1 1355 310 275 76 84 chr3 101051776 101051809 -58547974 - PB1D9 SINE Alu -1 92 2 1 1355 855 258 120 81 chr3 101051818 101052211 -58547572 + L1MC1 LINE L1 5920 6327 -6 1 1355 460 310 19 19 chr3 101053158 101053319 -58546464 - RSINE1 SINE B4 -2 163 3 1 1355 310 296 65 27 chr3 101053325 101053509 -58546274 - L1MEe LINE L1 -3873 981 791 1 1355 1015 228 24 0 chr3 101053527 101053738 -58546045 + B3 SINE B2 1 216 0 1 1355 225 0 0 0 chr3 101054542 101054567 -58545216 + (A)n Simple_repeat Simple_repeat 1 25 0 1 1355 1172 137 43 53 chr3 101054620 101054788 -58544995 - URR1B DNA MER1_type 0 225 56 1 1355 2094 156 8 6 chr3 101054788 101055142 -58544641 + RLTR15 LTR ERVK 5 359 0 1 1355 1172 137 43 53 chr3 101055142 101055181 -58544602 - URR1B DNA MER1_type -170 55 20 1 1355 311 343 120 14 chr3 101055286 101055502 -58544281 - HAL1 LINE L1 -856 1651 1413 1 1355 1006 219 186 18 chr3 101056112 101056391 -58543392 + MTD LTR MaLR 1 326 -93 1 1356 1036 254 81 0 chr3 101056534 101056817 -58542966 + MER82 DNA MER2_type 39 344 -309 1 1356 605 218 40 40 chr3 101057008 101057136 -58542647 + B1_Mur4 SINE Alu 3 129 -21 1 1356 486 0 0 0 chr3 101057136 101057190 -58542593 + (CA)n Simple_repeat Simple_repeat 2 55 0 1 1356 605 218 40 40 chr3 101057190 101057209 -58542574 + B1_Mur4 SINE Alu 130 149 -1 1 1356 205 138 0 0 chr3 101057210 101057239 -58542544 + (GGA)n Simple_repeat Simple_repeat 2 30 0 1 1356 357 206 73 0 chr3 101057253 101057321 -58542462 + ID_B1 SINE B4 82 154 -70 1 1356 325 262 60 36 chr3 101057321 101057336 -58542447 + PB1D10 SINE Alu 1 85 -32 1 1356 1246 221 103 10 chr3 101057339 101057696 -58542087 - MTD LTR MaLR -14 405 1 1 1356 447 297 59 26 chr3 101057738 101057890 -58541893 + MLT1B LTR MaLR 234 390 0 1 1356 213 121 0 0 chr3 101057905 101057938 -58541845 + (TC)n Simple_repeat Simple_repeat 1 33 0 1 1356 1192 191 29 0 chr3 101057971 101058181 -58541602 - B3 SINE B2 0 216 1 1 1356 541 260 93 43 chr3 101058207 101058368 -58541415 + B3A SINE B2 30 198 0 1 1356 23 0 0 0 chr3 101058383 101058406 -58541377 + AT_rich Low_complexity Low_complexity 1 23 0 1 1356 365 224 184 72 chr3 101058531 101058656 -58541127 - MLT1A1 LTR MaLR 0 408 270 1 1356 2355 87 15 58 chr3 101058698 101059040 -58540743 + ORR1A2 LTR MaLR 1 327 0 1 1356 366 23 0 0 chr3 101059053 101059096 -58540687 + (GA)n Simple_repeat Simple_repeat 2 44 0 1 1356 433 224 122 0 chr3 101059121 101059219 -58540564 - PB1D10 SINE Alu -7 110 1 1 1356 956 217 63 0 chr3 101059241 101059430 -58540353 - B3 SINE B2 -15 201 1 1 1356 565 225 24 32 chr3 101059540 101059664 -58540119 - RSINE1 SINE B4 -40 125 3 1 1356 357 324 63 18 chr3 101059936 101060159 -58539624 - HAL1 LINE L1 -295 2212 1980 1 1356 431 320 75 75 chr3 101060200 101060518 -58539265 - HAL1 LINE L1 -710 1797 1480 1 1356 416 267 55 69 chr3 101060531 101060676 -58539107 - ID_B1 SINE B4 -1 223 81 1 1356 1309 213 11 37 chr3 101061023 101061467 -58538316 - MTD LTR MaLR -16 403 16 1 1356 392 275 143 20 chr3 101061556 101061856 -58537927 - L1MC1 LINE L1 -1643 6317 5960 1 1356 595 218 18 0 chr3 101061867 101061977 -58537806 + B1_Mur4 SINE Alu 39 150 0 1 1356 1214 265 72 14 chr3 101061982 101062411 -58537372 - L1MC1 LINE L1 -594 5914 5461 1 1356 486 290 30 80 chr3 101062412 101062441 -58537342 - B2_Mm2 SINE B2 -6 189 166 1 1356 432 0 0 0 chr3 101062441 101062489 -58537294 + (TG)n Simple_repeat Simple_repeat 1 48 0 1 1356 684 265 84 3 chr3 101062489 101062658 -58537125 - B3 SINE B2 -39 177 1 1 1356 384 278 48 76 chr3 101062658 101062907 -58536876 - L1MC1 LINE L1 -850 5471 5230 1 1356 1029 245 156 25 chr3 101062907 101063233 -58536550 + MTE2b LTR MaLR 8 376 -3 1 1356 1229 225 60 64 chr3 101063242 101063601 -58536182 - L1MC1 LINE L1 -1103 5218 4874 1 1356 252 86 0 0 chr3 101063601 101063636 -58536147 + (CCA)n Simple_repeat Simple_repeat 2 36 0 1 1356 1229 225 60 64 chr3 101063636 101063727 -58536056 - L1MC1 LINE L1 -1448 4873 4771 1 1356 699 307 82 7 chr3 101063732 101064047 -58535736 + ORR1D2 LTR MaLR 1 359 0 1 1356 1256 280 38 52 chr3 101064066 101064694 -58535089 - L1MC1 LINE L1 -1565 4753 4140 1 1356 222 245 41 106 chr3 101064707 101064830 -58534953 - B2_Mm1t SINE B2 0 193 79 1 1356 263 269 0 0 chr3 101065331 101065398 -58534385 + GA-rich Low_complexity Low_complexity 3 69 0 1 1356 296 113 45 36 chr3 101066677 101066787 -58532996 + T-rich Low_complexity Low_complexity 4 114 0 1 1356 1248 27 0 14 chr3 101066940 101067088 -58532695 - B1_Mus2 SINE Alu -1 146 1 1 1356 721 150 405 0 chr3 101067195 101067348 -58532435 + B3 SINE B2 2 216 0 1 1356 1603 241 72 43 chr3 101067413 101067828 -58531955 - L1MC1 LINE L1 -2222 4099 3657 1 1356 326 298 0 50 chr3 101067828 101067948 -58531835 - PB1D9 SINE Alu -2 118 5 1 1356 1603 241 72 43 chr3 101067948 101068116 -58531667 - L1MC1 LINE L1 -2665 3656 3499 1 1356 507 236 70 130 chr3 101068165 101068350 -58531433 - B3A SINE B2 -4 194 21 1 1356 428 249 108 66 chr3 101068358 101068567 -58531216 - L1MC1 LINE L1 -2980 3341 3134 1 1356 185 0 0 39 chr3 101068567 101068593 -58531190 + (TTTTG)n Simple_repeat Simple_repeat 4 28 0 1 1356 1082 85 0 7 chr3 101068595 101068737 -58531046 - B1_Mus2 SINE Alu -6 141 1 1 1356 428 249 108 66 chr3 101068737 101068886 -58530897 - L1MC1 LINE L1 -3188 3133 2965 1 1356 390 340 88 4 chr3 101068901 101069161 -58530622 - L1MC1 LINE L1 -3602 2719 2438 1 1356 790 279 80 87 chr3 101069212 101069798 -58529985 - L1MC1 LINE L1 -4262 2246 1665 1 1356 2088 219 103 63 chr3 101070179 101071247 -58528536 + L1_Mur3 LINE L1 850 1979 -3901 1 1356 384 233 18 80 chr3 101071250 101071362 -58528421 + MT2B LTR ERVL 153 257 -344 1 1356 721 194 8 0 chr3 101071277 101071406 -58528377 + B1_Mus2 SINE Alu 18 147 0 1 1356 1235 206 38 10 chr3 101071420 101071734 -58528049 + L1_Mur3 LINE L1 2003 2325 -3555 1 1356 937 114 0 0 chr3 101071737 101071868 -58527915 + B2_Mm2 SINE B2 26 156 -39 1 1356 528 185 0 63 chr3 101071870 101071997 -58527786 + L1_Mur3 LINE L1 2664 2782 -3098 1 1356 474 18 0 0 chr3 101072033 101072088 -58527695 + (TG)n Simple_repeat Simple_repeat 1 55 0 1 1356 315 313 69 9 chr3 101072089 101072205 -58527578 - RSINE1 SINE B4 -41 124 2 1 1356 1491 101 332 28 chr3 101072208 101072350 -58527433 - RLTR44E LTR ERVK -28 424 237 1 1356 210 37 0 0 chr3 101072350 101072377 -58527406 + (CAAA)n Simple_repeat Simple_repeat 3 29 0 1 1356 1491 101 332 28 chr3 101072377 101072559 -58527224 - RLTR44E LTR ERVK -216 236 3 1 1356 468 327 51 81 chr3 101072579 101072875 -58526908 - L1MC1 LINE L1 -5700 808 522 1 1356 243 210 0 47 chr3 101073153 101073238 -58526545 + T-rich Low_complexity Low_complexity 5 85 0 1 1356 411 231 16 11 chr3 101073245 101073347 -58526436 - PB1D10 SINE Alu -6 114 10 1 1356 393 274 76 84 chr3 101073421 101073722 -58526061 - HAL1 LINE L1 -1153 1354 928 1 1356 308 287 11 0 chr3 101074071 101074158 -58525625 - HAL1 LINE L1 -1989 518 431 1 1356 246 235 57 29 chr3 101074225 101074295 -58525488 - MT2B2 LTR ERVL -352 232 161 1 1356 1894 171 76 3 chr3 101074459 101074800 -58524983 + ORR1D1 LTR MaLR 1 366 -8 1 1356 256 292 103 35 chr3 101074809 101074983 -58524800 - HAL1 LINE L1 -2293 214 29 1 1356 1106 163 34 15 chr3 101075813 101076018 -58523765 - ORR1C2 LTR MaLR -4 380 172 1 1356 459 212 20 0 chr3 101076018 101076169 -58523614 + GA-rich Low_complexity Low_complexity 1 154 0 1 1356 987 144 40 0 chr3 101076170 101076343 -58523440 - ORR1C2 LTR MaLR -194 180 1 1 1356 699 336 35 12 chr3 101076343 101076686 -58523097 + RMER15-int LTR ERVL 311 661 -4338 1 1356 458 284 83 0 chr3 101077323 101077492 -58522291 + Lx8 LINE L1 6189 6371 -1102 1 1356 713 272 45 31 chr3 101077638 101077862 -58521921 + RMER15 LTR ERVL 336 562 -13 1 1356 214 282 116 127 chr3 101078003 101078279 -58521504 + L2c LINE L2 3114 3386 -1 1 1356 958 134 0 7 chr3 101078573 101078716 -58521067 + B1_Mur4 SINE Alu 2 143 -7 1 1356 285 274 57 45 chr3 101080290 101080378 -58519405 - B4 SINE B4 -7 285 197 1 1356 381 86 0 0 chr3 101080378 101080436 -58519347 + (TC)n Simple_repeat Simple_repeat 2 59 0 1 1356 593 229 175 11 chr3 101080436 101080613 -58519170 - B4 SINE B4 -86 206 1 1 1356 213 329 92 0 chr3 101083229 101083305 -58516478 - ID4_ SINE ID 0 83 1 1 1356 186 282 23 114 chr3 101083862 101083950 -58515833 + MIR3 SINE MIR 88 167 -41 1 1356 690 212 68 12 chr3 101084299 101084461 -58515322 + MIRc SINE MIR 66 236 -32 2 1356 453 152 13 0 chr3 101085508 101085587 -58514196 - MER53 DNA hAT 0 193 114 2 1356 201 39 0 0 chr3 101085663 101085689 -58514094 + (T)n Simple_repeat Simple_repeat 1 26 0 2 1356 324 0 0 0 chr3 101085841 101085877 -58513906 + (CA)n Simple_repeat Simple_repeat 1 36 0 2 1356 343 262 100 60 chr3 101085929 101086079 -58513704 + MLT1F2 LTR MaLR 130 285 -275 2 1356 422 250 52 35 chr3 101086266 101086382 -58513401 + PB1D7 SINE Alu 2 119 -1 2 1356 349 208 103 10 chr3 101087229 101087326 -58512457 - PB1D7 SINE Alu -2 118 13 2 1356 970 169 48 27 chr3 101087448 101087636 -58512147 - B2_Mm2 SINE B2 -2 193 2 2 1356 999 218 29 14 chr3 101087654 101087863 -58511920 - ID_B1 SINE B4 -2 222 11 2 1356 294 240 26 13 chr3 101088768 101088844 -58510939 - ID4 SINE ID -6 77 1 2 1356 879 195 0 0 chr3 101089125 101089274 -58510509 - B1_Mur4 SINE Alu -1 149 1 2 1356 315 0 0 0 chr3 101089626 101089661 -58510122 + (CA)n Simple_repeat Simple_repeat 2 36 0 2 1356 452 270 57 21 chr3 101089892 101090032 -58509751 + L1MB8 LINE L1 6021 6165 -13 2 1356 254 135 0 37 chr3 101091923 101091977 -58507806 + GA-rich Low_complexity Low_complexity 1 52 0 2 1356 876 197 84 74 chr3 101092253 101092580 -58507203 + ORR1D1 LTR MaLR 87 384 0 2 1356 805 224 25 0 chr3 101092580 101092739 -58507044 - B3 SINE B2 -52 164 2 2 1356 374 171 100 0 chr3 101093206 101093276 -58506507 - ID4_ SINE ID -4 79 3 2 1356 213 237 0 0 chr3 101093358 101093417 -58506366 + (TG)n Simple_repeat Simple_repeat 2 60 0 2 1356 330 26 0 0 chr3 101093808 101093847 -58505936 + (CA)n Simple_repeat Simple_repeat 2 40 0 2 1356 26 0 0 0 chr3 101093920 101093946 -58505837 + AT_rich Low_complexity Low_complexity 1 26 0 2 1356 520 191 0 0 chr3 101094181 101094265 -58505518 + B3 SINE B2 6 89 -127 2 1356 286 105 86 17 chr3 101094279 101094337 -58505446 + B3 SINE B2 150 211 -5 2 1356 362 252 79 43 chr3 101094473 101094660 -58505123 - RMER4B LTR ERVK -35 550 319 2 1356 515 30 0 15 chr3 101094660 101094728 -58505055 + RLTR10 LTR ERVK 1 67 -323 2 1356 395 42 0 0 chr3 101094719 101094767 -58505016 + RLTR10 LTR ERVK 343 390 0 2 1356 915 201 162 18 chr3 101094767 101094816 -58504967 - RMER4B LTR ERVK -261 324 268 2 1356 489 34 0 0 chr3 101094816 101094875 -58504908 + (TCC)n Simple_repeat Simple_repeat 1 59 0 2 1356 915 201 162 18 chr3 101094875 101095108 -58504675 - RMER4B LTR ERVK -318 267 3 2 1356 388 294 15 118 chr3 101095305 101095509 -58504274 - MER34A1 LTR ERV1 -404 183 1 2 1356 189 0 0 0 chr3 101095515 101095536 -58504247 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 2 1356 1625 52 0 0 chr3 101096127 101096319 -58503464 + B2_Mm1a SINE B2 1 192 -1 2 1356 350 242 130 11 chr3 101097457 101097549 -58502234 - MER44B DNA MER2_type -443 107 5 2 1356 2904 184 165 44 chr3 101098555 101098813 -58500970 + RMER1B Other Other 155 450 -616 2 1356 507 17 0 0 chr3 101098813 101098873 -58500910 + (TG)n Simple_repeat Simple_repeat 2 61 0 2 1356 2904 184 165 44 chr3 101098873 101099428 -58500355 + RMER1B Other Other 451 1065 -1 2 1356 332 276 26 71 chr3 101099756 101099869 -58499914 + PB1D10 SINE Alu 2 109 -8 2 1356 227 311 229 33 chr3 101100631 101100814 -58498969 - L2a LINE L2 -1 3425 3207 2 1356 326 319 152 61 chr3 101101247 101101577 -58498206 - MLT1G1 LTR MaLR -168 387 28 2 1356 259 279 38 12 chr3 101102298 101102378 -58497405 + ID4 SINE ID 2 83 0 2 1356 542 155 97 0 chr3 101102640 101102743 -58497040 - B3 SINE B2 -103 113 1 2 1356 420 20 0 0 chr3 101102901 101102950 -58496833 + (TG)n Simple_repeat Simple_repeat 1 49 0 2 1356 640 289 82 16 chr3 101103007 101103264 -58496519 - B4 SINE B4 -18 274 1 2 1356 382 313 214 8 chr3 101105102 101105495 -58494288 - L2a LINE L2 -20 3406 2933 2 1356 998 311 112 26 chr3 101105957 101106254 -58493529 + RMER5 LTR ERV1 41 364 -170 2 1356 180 0 0 0 chr3 101106254 101106274 -58493509 + (TTG)n Simple_repeat Simple_repeat 2 21 0 2 1356 998 311 112 26 chr3 101106274 101106431 -58493352 + RMER5 LTR ERV1 365 533 -1 2 1356 187 319 73 40 chr3 101107063 101107187 -58492596 + L4 LINE RTE 626 753 -1276 2 1356 777 65 0 0 chr3 101108001 101108109 -58491674 + (GGGA)n Simple_repeat Simple_repeat 4 111 0 2 1356 552 282 84 115 chr3 101108140 101108497 -58491286 + ORR1E LTR MaLR 2 347 -12 2 1356 405 0 0 0 chr3 101108911 101108956 -58490827 + (TG)n Simple_repeat Simple_repeat 1 45 0 2 1356 1191 251 101 11 chr3 101109650 101109997 -58489786 + MTEb LTR MaLR 1 378 -1 2 1356 273 57 0 0 chr3 101110321 101110356 -58489427 + (T)n Simple_repeat Simple_repeat 1 35 0 2 1356 319 282 0 0 chr3 101111124 101111195 -58488588 - L3 LINE CR1 -201 4288 4218 2 1356 302 183 33 0 chr3 101111204 101111264 -58488519 - L3 LINE CR1 -462 4027 3966 2 1356 456 231 45 11 chr3 101112380 101112491 -58487292 + PB1D7 SINE Alu 3 112 -8 2 1356 302 292 33 59 chr3 101112507 101112660 -58487123 - L1MCa LINE L1 -4537 1971 1823 2 1356 474 323 15 8 chr3 101112839 101112970 -58486813 - RSINE1 SINE B4 -22 143 12 2 1356 258 305 6 35 chr3 101113054 101113227 -58486556 + (CAAGG)n Simple_repeat Simple_repeat 3 170 0 2 1356 279 266 31 0 chr3 101113494 101113558 -58486225 - MLT1J LTR MaLR -3 559 494 2 1356 504 237 161 31 chr3 101113919 101114080 -58485703 - B3A SINE B2 -15 183 2 2 1356 308 284 45 18 chr3 101114106 101114217 -58485566 + PB1D7 SINE Alu 1 114 -6 2 1356 1059 120 0 0 chr3 101114422 101114739 -58485044 + (CA)n Simple_repeat Simple_repeat 1 317 0 2 1356 616 267 78 70 chr3 101115712 101115970 -58483813 - MLT1J LTR MaLR -23 489 230 2 1356 420 237 30 30 chr3 101116611 101116711 -58483072 + B1_Mur2 SINE Alu 40 139 -10 2 1356 306 186 11 23 chr3 101116711 101116799 -58482984 + GA-rich Low_complexity Low_complexity 1 87 0 2 1356 484 320 63 17 chr3 101117672 101117847 -58481936 + MER58A DNA MER1_type 42 224 0 2 1356 1480 156 70 11 chr3 101117909 101118182 -58481601 - MT2A LTR ERVL 0 533 245 2 1356 2524 176 146 50 chr3 101118196 101118751 -58481032 + RMER19C LTR ERVK 1 608 -3 2 1356 1054 176 26 5 chr3 101118751 101118922 -58480861 - MT2A LTR ERVL -358 175 1 2 1356 3025 76 15 0 chr3 101119446 101119840 -58479943 - MTB LTR MaLR 0 400 1 2 1356 380 194 0 0 chr3 101119934 101119996 -58479787 + B3A SINE B2 27 88 -110 2 1356 231 325 24 48 chr3 101120039 101120123 -58479660 + MTEa LTR MaLR 11 92 -287 2 1356 22 0 0 0 chr3 101120422 101120444 -58479339 + AT_rich Low_complexity Low_complexity 1 22 0 2 1356 699 12 0 0 chr3 101120869 101120949 -58478834 + (TTC)n Simple_repeat Simple_repeat 2 81 0 2 1356 24 0 0 0 chr3 101120949 101120973 -58478810 + AT_rich Low_complexity Low_complexity 1 24 0 2 1356 4363 82 12 0 chr3 101121037 101121608 -58478175 - L1_Mus1 LINE L1 0 6567 5990 2 1356 1097 177 0 0 chr3 101121690 101121871 -58477912 - B3 SINE B2 -35 181 1 2 1356 891 249 24 0 chr3 101121904 101122109 -58477674 + B3 SINE B2 2 211 -5 2 1356 726 256 41 0 chr3 101122191 101122363 -58477420 - B3A SINE B2 -18 180 2 2 1356 227 310 125 46 chr3 101123909 101124061 -58475722 - MLT1I LTR MaLR -39 372 209 2 1356 445 279 0 0 chr3 101124691 101124795 -58474988 + PB1D10 SINE Alu 9 112 -5 2 1356 192 40 0 0 chr3 101125343 101125368 -58474415 + (G)n Simple_repeat Simple_repeat 1 25 0 2 1356 267 297 48 56 chr3 101125987 101126112 -58473671 - B1F SINE Alu -23 126 3 2 1356 1473 110 9 27 chr3 101127090 101127315 -58472468 + URR1B DNA MER1_type 5 225 0 2 1356 901 219 82 58 chr3 101127722 101128013 -58471770 + RMER10A LTR ERVL 1 298 -144 2 1356 543 56 0 0 chr3 101128014 101128085 -58471698 + (TTC)n Simple_repeat Simple_repeat 1 71 0 2 1356 243 195 122 92 chr3 101128085 101128249 -58471534 + RMER10A LTR ERVL 257 425 -17 2 1356 189 0 0 0 chr3 101128600 101128621 -58471162 + (TTA)n Simple_repeat Simple_repeat 1 21 0 2 1356 2394 81 3 58 chr3 101129200 101129543 -58470240 + ORR1A2 LTR MaLR 4 327 0 2 1356 292 311 72 29 chr3 101129754 101129893 -58469890 + B4 SINE B4 63 207 -85 2 1356 437 256 15 69 chr3 101129794 101129924 -58469859 + B1_Mur1 SINE Alu 21 143 -6 2 1356 3355 21 3 0 chr3 101129969 101130350 -58469433 + L1Md_F2 LINE L1 6199 6580 -2 2 1356 844 287 138 43 chr3 101130448 101130957 -58468826 - Arthur1B DNA Tip100 -259 966 410 2 1356 254 319 106 46 chr3 101131068 101131219 -58468564 - ORR1D2 LTR MaLR -125 245 86 2 1356 585 216 134 58 chr3 101131449 101131521 -58468262 - URR1A DNA MER1_type 0 226 162 2 1356 2402 117 34 3 chr3 101131521 101131873 -58467910 - ORR1B2 LTR MaLR -4 363 1 2 1356 585 216 134 58 chr3 101131873 101131939 -58467844 - URR1A DNA MER1_type -65 161 92 2 1356 348 64 0 0 chr3 101131939 101131986 -58467797 + (TA)n Simple_repeat Simple_repeat 1 47 0 2 1356 585 216 134 58 chr3 101131986 101132018 -58467765 - URR1A DNA MER1_type -135 91 43 2 1356 563 254 0 0 chr3 101132204 101132330 -58467453 + B3 SINE B2 86 211 -5 2 1356 1427 179 125 32 chr3 101132697 101133118 -58466665 + MT2A LTR ERVL 1 553 -48 2 1356 345 197 0 0 chr3 101133141 101133212 -58466571 + (CATATA)n Simple_repeat Simple_repeat 2 72 0 2 1356 914 263 4 87 chr3 101133253 101133429 -58466354 + B4A SINE B4 41 207 -85 2 1356 2455 148 19 37 chr3 101133429 101133858 -58465925 + MTC LTR MaLR 1 421 0 2 1356 914 263 4 87 chr3 101133858 101133956 -58465827 + B4A SINE B4 208 292 0 2 1356 194 0 39 0 chr3 101133957 101133983 -58465800 + (CA)n Simple_repeat Simple_repeat 2 28 0 2 1356 245 310 132 9 chr3 101134134 101134248 -58465535 - B1_Mus1 SINE Alu -18 130 3 2 1356 1239 65 30 6 chr3 101135490 101135659 -58464124 + B2_Mm2 SINE B2 5 177 -18 2 1356 414 0 0 0 chr3 101135736 101135782 -58464001 + (TG)n Simple_repeat Simple_repeat 2 47 0 2 1356 1169 68 0 13 chr3 101135927 101136076 -58463707 - B1_Mus2 SINE Alu 0 147 1 2 1356 4877 121 88 18 chr3 101136211 101137043 -58462740 - RMER19B LTR ERVK -12 890 1 2 1356 826 192 0 7 chr3 101137199 101137346 -58462437 - B1_Mus2 SINE Alu -1 146 1 2 1356 338 211 127 0 chr3 101137370 101137441 -58462342 - PB1D10 SINE Alu -37 80 1 2 1356 343 203 0 0 chr3 101137383 101137442 -58462341 - ID_B1 SINE B4 -85 139 81 3 1356 34 24 0 0 chr3 101137442 101137483 -58462300 + AT_rich Low_complexity Low_complexity 1 41 0 3 1356 357 269 86 86 chr3 101137492 101137655 -58462128 + MLT1A1 LTR MaLR 6 168 -240 3 1356 637 272 40 0 chr3 101138029 101138202 -58461581 + B3A SINE B2 1 180 -18 3 1356 918 291 48 87 chr3 101138230 101138928 -58460855 + L1M5 LINE L1 2257 2933 -3213 3 1356 843 115 84 8 chr3 101138928 101139059 -58460724 + B1_Mur4 SINE Alu 1 141 -9 3 1356 507 17 0 0 chr3 101139064 101139124 -58460659 + (TAGA)n Simple_repeat Simple_repeat 2 61 0 3 1356 918 291 45 86 chr3 101139124 101139228 -58460555 + L1M5 LINE L1 2935 3043 -3103 3 1356 1414 73 10 16 chr3 101139228 101139422 -58460361 + B2_Mm2 SINE B2 2 194 -1 3 1356 627 214 21 21 chr3 101139454 101139597 -58460186 + B1_Mur3 SINE Alu 2 144 -5 3 1356 623 317 81 37 chr3 101139615 101139910 -58459873 + L1MD LINE L1 3047 3354 -2792 3 1356 1819 196 30 68 chr3 101139913 101140340 -58459443 - MTD LTR MaLR -4 415 5 3 1356 258 248 88 44 chr3 101140394 101140554 -58459229 + L1M5 LINE L1 3465 3631 -2515 3 1356 438 248 57 0 chr3 101140576 101140681 -58459102 - PB1D10 SINE Alu -6 111 1 3 1356 361 281 50 0 chr3 101140811 101140932 -58458851 + Arthur1B DNA Tip100 866 992 -233 3 1356 651 125 10 0 chr3 101140935 101141039 -58458744 + B3 SINE B2 5 109 -107 3 1356 658 212 0 8 chr3 101141037 101141156 -58458627 + B1_Mur2 SINE Alu 12 129 -20 3 1356 380 284 0 25 chr3 101141387 101141506 -58458277 - B4A SINE B4 0 292 177 3 1356 256 273 45 0 chr3 101141532 101141620 -58458163 - B4A SINE B4 -199 93 2 3 1356 535 261 84 0 chr3 101141802 101141944 -58457839 + RSINE1 SINE B4 4 157 -8 3 1356 444 299 57 57 chr3 101141960 101142332 -58457451 + L1M5 LINE L1 4080 4451 -1695 3 1356 1137 183 25 5 chr3 101142337 101142535 -58457248 + B3 SINE B2 2 203 -13 3 1356 349 251 210 0 chr3 101142587 101142754 -58457029 + L1M5 LINE L1 4398 4599 -1547 3 1356 441 278 127 44 chr3 101142789 101142970 -58456813 - B3A SINE B2 -1 197 2 3 1356 1025 237 45 30 chr3 101143001 101143266 -58456517 + B4A SINE B4 1 269 -23 3 1356 252 0 0 0 chr3 101143266 101143294 -58456489 + (CA)n Simple_repeat Simple_repeat 2 29 0 3 1356 424 264 47 0 chr3 101143323 101143429 -58456354 + MER58B DNA MER1_type 229 339 -2 3 1356 441 239 34 42 chr3 101144101 101144219 -58455564 - PB1D9 SINE Alu -1 119 3 3 1356 337 171 23 0 chr3 101144764 101144852 -58454931 + (TG)n Simple_repeat Simple_repeat 1 90 0 3 1356 533 290 49 60 chr3 101144951 101145256 -58454527 - B4A SINE B4 -23 269 2 3 1356 438 289 75 37 chr3 101145256 101145440 -58454343 - B4A SINE B4 -54 238 48 3 1356 294 164 0 0 chr3 101145594 101145649 -58454134 + CT-rich Low_complexity Low_complexity 2 56 0 3 1356 354 200 43 0 chr3 101145970 101146040 -58453743 - MER5A1 DNA MER1_type -93 73 1 3 1356 375 305 132 54 chr3 101146151 101146484 -58453299 + ORR1E LTR MaLR 1 359 0 3 1356 970 227 9 19 chr3 101146527 101146738 -58453045 - B3 SINE B2 -6 210 2 3 1356 263 319 95 15 chr3 101147032 101147169 -58452614 + MLT1M LTR MaLR 37 184 -488 3 1356 205 183 16 16 chr3 101148170 101148231 -58451552 + (CA)n Simple_repeat Simple_repeat 2 62 0 3 1356 250 282 130 27 chr3 101149257 101149403 -58450380 + MIR3 SINE MIR 33 193 -15 3 1356 229 288 37 12 chr3 101149930 101150011 -58449772 + ID4_ SINE ID 1 83 0 3 1356 582 256 0 8 chr3 101150073 101150191 -58449592 + PB1 SINE Alu 3 119 -8 3 1356 234 298 19 160 chr3 101150214 101150370 -58449413 + ORR1E LTR MaLR 4 137 -222 3 1356 218 321 63 88 chr3 101151050 101151255 -58448528 + L2b LINE L2 3011 3210 -177 3 1356 283 328 30 45 chr3 101151597 101151731 -58448052 + L2b LINE L2 3225 3356 -19 3 1356 271 304 94 37 chr3 101152073 101152264 -58447519 + MLT1L LTR MaLR 396 597 -13 3 1356 1303 213 84 60 chr3 101152453 101152823 -58446960 - MTEb LTR MaLR 0 379 1 3 1356 210 333 0 12 chr3 101152954 101153039 -58446744 - L2c LINE L2 -221 3166 3083 3 1356 250 358 53 29 chr3 101153101 101153308 -58446475 - MIRb SINE MIR -34 234 23 3 1356 420 20 0 0 chr3 101154187 101154236 -58445547 + (CA)n Simple_repeat Simple_repeat 2 50 0 3 1356 709 173 49 28 chr3 101155242 101155385 -58444398 - B1_Mm SINE Alu 0 147 2 3 1356 197 333 13 0 chr3 101155629 101155704 -58444079 + MIRc SINE MIR 189 264 -4 3 1356 383 216 115 19 chr3 101155969 101156073 -58443710 + PB1D10 SINE Alu 3 116 -1 3 1356 225 0 0 0 chr3 101156247 101156272 -58443511 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 3 1356 1261 35 0 0 chr3 101156274 101156419 -58443364 - B1_Mus2 SINE Alu -2 145 1 3 1356 249 255 0 0 chr3 101156841 101156888 -58442895 + B2_Mm2 SINE B2 5 51 -144 3 1356 413 173 45 55 chr3 101157025 101157135 -58442648 + B3A SINE B2 88 196 -2 3 1356 725 176 0 32 chr3 101157135 101157258 -58442525 - B1_Mur1 SINE Alu -2 147 29 3 1356 2127 158 14 17 chr3 101157459 101157819 -58441964 + ORR1B2 LTR MaLR 1 359 -8 3 1356 233 250 0 0 chr3 101158016 101158060 -58441723 + 5S rRNA rRNA 2 45 -76 3 1356 29 0 0 0 chr3 101158069 101158098 -58441685 + AT_rich Low_complexity Low_complexity 1 29 0 3 1356 206 296 24 24 chr3 101158279 101158362 -58441421 + CT-rich Low_complexity Low_complexity 1 83 0 3 1356 615 216 14 29 chr3 101159248 101159386 -58440397 + B1_Mur1 SINE Alu 1 136 -13 3 1356 248 53 26 0 chr3 101159387 101159425 -58440358 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 3 1356 252 226 32 0 chr3 101159705 101159767 -58440016 + MER57A-int LTR ERV1 5805 5868 -319 3 1356 289 248 145 15 chr3 101160548 101160679 -58439104 - B1F SINE Alu -1 148 1 3 1356 213 233 0 0 chr3 101160726 101160769 -58439014 + MIRb SINE MIR 211 253 -15 3 1356 942 215 55 79 chr3 101160798 101161051 -58438732 + Charlie22a DNA MER1_type 98 344 -147 3 1356 21 36 0 0 chr3 101161064 101161092 -58438691 + AT_rich Low_complexity Low_complexity 1 28 0 3 1356 240 239 8 168 chr3 101161110 101161241 -58438542 + Charlie22a DNA MER1_type 370 479 -12 3 1356 270 68 0 137 chr3 101161592 101161643 -58438140 + PB1D9 SINE Alu 77 120 0 3 1356 321 372 128 20 chr3 101162412 101162599 -58437184 - MLT1L LTR MaLR -340 270 63 3 1356 1852 160 46 59 chr3 101162599 101162970 -58436813 + ORR1D1 LTR MaLR 1 366 -8 3 1356 271 258 130 59 chr3 101162979 101163148 -58436635 - HAL1 LINE L1 -2293 214 34 3 1356 236 342 162 25 chr3 101163284 101163488 -58436295 + L2 LINE L2 1532 1763 -1656 3 1356 850 134 0 40 chr3 101163593 101163741 -58436042 + B1_Mus1 SINE Alu 6 147 -1 3 1356 390 270 43 98 chr3 101163597 101163761 -58436022 + B4A SINE B4 94 248 -44 3 1356 183 42 0 0 chr3 101163768 101163792 -58435991 + (GA)n Simple_repeat Simple_repeat 2 25 0 3 1356 318 339 81 51 chr3 101164469 101164705 -58435078 + L2 LINE L2 1810 2052 -1367 3 1356 1520 243 60 8 chr3 101164712 101165065 -58434718 - MTEb LTR MaLR -8 371 1 3 1356 465 323 122 5 chr3 101165212 101165408 -58434375 + L2 LINE L2 2231 2449 -970 3 1356 1996 130 108 3 chr3 101165772 101166104 -58433679 - ORR1B2 LTR MaLR 0 367 1 3 1356 387 0 0 0 chr3 101166287 101166330 -58433453 + (TC)n Simple_repeat Simple_repeat 2 44 0 3 1356 495 0 0 0 chr3 101166330 101166384 -58433399 + (TG)n Simple_repeat Simple_repeat 2 56 0 3 1356 770 208 7 7 chr3 101166389 101166534 -58433249 - B1_Mur1 SINE Alu -1 148 4 3 1356 247 91 55 0 chr3 101166722 101166777 -58433006 + (TTTG)n Simple_repeat Simple_repeat 2 59 0 3 1356 1545 137 4 4 chr3 101166788 101167016 -58432767 - RMER19B LTR ERVK -674 228 1 3 1356 764 267 154 9 chr3 101167403 101167728 -58432055 - MTEa LTR MaLR -2 377 6 3 1356 366 303 10 0 chr3 101167815 101167914 -58431869 + B3A SINE B2 1 100 -98 3 1356 315 233 13 76 chr3 101167992 101168071 -58431712 + B3A SINE B2 7 80 -118 3 1356 566 58 6 88 chr3 101168073 101168243 -58431540 + GA-rich Low_complexity Low_complexity 2 157 0 3 1356 314 171 398 28 chr3 101168247 101168355 -58431428 + B1_Mus1 SINE Alu 1 148 0 3 1356 279 0 0 0 chr3 101168366 101168397 -58431386 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 3 1356 492 292 134 71 chr3 101168423 101168692 -58431091 + LTR48 LTR ERV1 16 301 -486 3 1356 502 282 21 42 chr3 101168792 101168981 -58430802 + LTR48 LTR ERV1 603 787 0 3 1356 1053 240 86 53 chr3 101169004 101169296 -58430487 - MTE2b LTR MaLR 0 379 78 3 1356 520 226 0 99 chr3 101169296 101169438 -58430345 + B1_Mur1 SINE Alu 1 128 -21 3 1356 249 143 232 0 chr3 101169468 101169524 -58430259 - MTE2b LTR MaLR -298 81 13 3 1356 441 0 0 0 chr3 101170308 101170357 -58429426 + (CA)n Simple_repeat Simple_repeat 1 49 0 3 1356 324 0 0 0 chr3 101170371 101170407 -58429376 + (GA)n Simple_repeat Simple_repeat 1 36 0 3 1356 438 53 0 0 chr3 101170654 101170711 -58429072 + (TCCC)n Simple_repeat Simple_repeat 2 58 0 3 1356 338 22 43 0 chr3 101171024 101171070 -58428713 + (AGGGGG)n Simple_repeat Simple_repeat 5 52 0 3 1356 262 221 12 83 chr3 101171971 101172055 -58427728 - B1F SINE Alu -1 148 71 3 1356 560 182 35 26 chr3 101172340 101172453 -58427330 - B1F2 SINE Alu -2 147 34 3 1356 229 329 108 38 chr3 101172523 101172681 -58427102 - L2b LINE L2 -4 3371 3203 3 1356 642 227 50 75 chr3 101172736 101172936 -58426847 - B3A SINE B2 -3 195 1 3 1356 502 322 25 46 chr3 101173013 101173254 -58426529 - MamRep1161 DNA TcMar -691 266 31 3 1356 329 176 15 0 chr3 101173329 101173397 -58426386 - 7SK RNA RNA -257 74 6 3 1356 3121 46 5 8 chr3 101173850 101174247 -58425536 - MTA_Mm LTR MaLR 0 396 1 3 1356 243 239 53 66 chr3 101174463 101174478 -58425305 + B4A SINE B4 76 105 -187 3 1356 468 161 0 75 chr3 101174478 101174490 -58425293 + B1F2 SINE Alu 12 23 -126 3 1356 2225 108 186 119 chr3 101174490 101175038 -58424745 + RMER4B LTR ERVK 1 585 0 3 1356 243 239 53 66 chr3 101175038 101175086 -58424697 + B4A SINE B4 106 150 -142 3 1356 492 161 0 75 chr3 101175086 101175119 -58424664 + B1_Mur2 SINE Alu 20 98 -51 3 1356 266 301 71 58 chr3 101175308 101175463 -58424320 - MLT1A1 LTR MaLR -209 199 43 3 1356 815 104 90 0 chr3 101175588 101175722 -58424061 - B1_Mur4 SINE Alu 0 150 5 4 1356 437 276 71 0 chr3 101176058 101176185 -58423598 + B1F SINE Alu 1 136 -13 4 1356 198 0 0 0 chr3 101176185 101176207 -58423576 + (CAAAA)n Simple_repeat Simple_repeat 1 22 0 4 1356 182 37 0 36 chr3 101176733 101176761 -58423022 + (TGGGGG)n Simple_repeat Simple_repeat 3 29 0 4 1356 259 269 26 0 chr3 101177113 101177191 -58422592 + ID4_ SINE ID 1 80 -3 4 1356 524 311 8 0 chr3 101177224 101177356 -58422427 + RSINE1 SINE B4 4 136 -29 4 1356 237 235 12 36 chr3 101177685 101177769 -58422014 + G-rich Low_complexity Low_complexity 6 87 0 4 1356 480 111 22 11 chr3 101178264 101178355 -58421428 + (TC)n Simple_repeat Simple_repeat 1 92 0 4 1356 231 333 81 67 chr3 101178677 101178836 -58420947 + L2c LINE L2 3044 3202 -185 4 1356 306 0 0 0 chr3 101178836 101178870 -58420913 + (CA)n Simple_repeat Simple_repeat 2 35 0 4 1356 231 333 81 67 chr3 101178870 101178993 -58420790 + L2c LINE L2 3203 3330 -57 4 1356 187 280 39 26 chr3 101179195 101179272 -58420511 - L2c LINE L2 -50 3337 3260 4 1356 415 235 0 0 chr3 101179487 101179572 -58420211 - B4 SINE B4 -206 86 2 4 1356 455 262 47 20 chr3 101180482 101180630 -58419153 - MIR SINE MIR -12 250 99 4 1356 213 177 31 46 chr3 101180953 101181018 -58418765 + (CGGGG)n Simple_repeat Simple_repeat 3 66 0 4 1356 192 77 0 0 chr3 101183464 101183490 -58416293 + (A)n Simple_repeat Simple_repeat 1 26 0 4 1356 348 77 0 0 chr3 101185021 101185073 -58414710 + (GA)n Simple_repeat Simple_repeat 1 52 0 4 1356 271 339 71 54 chr3 101185896 101186080 -58413703 - ORR1E LTR MaLR -172 187 1 4 1356 233 337 89 0 chr3 101186237 101186338 -58413445 - MIRc SINE MIR -67 201 92 4 1356 702 276 128 62 chr3 101186364 101186716 -58413067 - MLT1J LTR MaLR -137 375 1 4 1356 197 258 79 16 chr3 101186722 101186785 -58412998 - MIRb SINE MIR -179 89 23 4 1356 245 243 51 51 chr3 101187128 101187206 -58412577 - ID4 SINE ID -4 79 2 4 169 664 296 132 9 chr3 101187434 101187768 -58412015 - Charlie4a DNA MER1_type -115 393 19 4 1357 957 168 117 15 chr3 101188915 101189120 -58410663 - URR1A DNA MER1_type 0 226 1 4 1357 219 69 0 0 chr3 101190128 101190157 -58409626 + (TTTTC)n Simple_repeat Simple_repeat 3 31 0 4 1357 685 81 17 2 chr3 101190157 101190265 -58409518 - B1_Mus1 SINE Alu 0 120 3 4 1357 183 42 0 0 chr3 101190573 101190597 -58409186 + (CAGCC)n Simple_repeat Simple_repeat 3 26 0 4 1357 21 36 0 0 chr3 101190941 101190969 -58408814 + AT_rich Low_complexity Low_complexity 1 28 0 4 1357 405 0 0 0 chr3 101191916 101191961 -58407822 + (CTG)n Simple_repeat Simple_repeat 2 46 0 4 1357 204 259 0 36 chr3 101192383 101192439 -58407344 + CT-rich Low_complexity Low_complexity 4 57 0 4 1357 2619 102 18 0 chr3 101192807 101193199 -58406584 - Lx2B LINE L1 -1 6999 6601 4 1357 1039 276 62 36 chr3 101195269 101195656 -58404127 - MamRep434 DNA TcMar -3 423 27 4 1357 273 291 0 25 chr3 101196039 101196120 -58403663 - MADE2 DNA Mariner 0 80 2 4 1357 545 211 248 0 chr3 101196162 101196323 -58403460 + RMER30 DNA MER1_type 1 201 -1 4 1357 364 340 151 44 chr3 101197546 101197817 -58401966 + MLT1L LTR MaLR 6 305 -305 4 1357 821 239 45 0 chr3 101201521 101201752 -58398031 - L1M5 LINE L1 -403 5781 5538 4 1357 207 186 0 0 chr3 101202211 101202254 -58397529 + (CGTG)n Simple_repeat Simple_repeat 4 46 0 4 1357 209 235 19 19 chr3 101203279 101203331 -58396452 + MIR3 SINE MIR 115 166 -42 4 1357 389 209 70 35 chr3 101203869 101203983 -58395800 - PB1D7 SINE Alu -2 118 1 4 1357 298 298 97 19 chr3 101204338 101204492 -58395291 - B4A SINE B4 -126 166 1 4 1357 378 0 0 0 chr3 101204598 101204640 -58395143 + (TTCC)n Simple_repeat Simple_repeat 2 43 0 4 1357 263 233 17 0 chr3 101204641 101204701 -58395082 - B1_Mur2 SINE Alu -47 102 42 4 1357 290 236 70 130 chr3 101204735 101204790 -58394993 - B2_Mm1t SINE B2 -5 188 141 4 1357 279 79 0 0 chr3 101204790 101204828 -58394955 + (TG)n Simple_repeat Simple_repeat 1 38 0 4 1357 408 214 126 54 chr3 101204828 101204972 -58394811 - B3A SINE B2 -53 140 1 4 1357 853 127 249 0 chr3 101206034 101206215 -58393568 + URR1A DNA MER1_type 1 226 0 4 1357 413 219 179 9 chr3 101206323 101206429 -58393354 + PB1 SINE Alu 1 124 -3 4 1357 352 250 117 65 chr3 101206429 101206583 -58393200 + RSINE1 SINE B4 4 165 0 4 1357 294 245 8 117 chr3 101206636 101206756 -58393027 + PB1D10 SINE Alu 5 111 -6 4 1357 232 224 224 0 chr3 101207995 101208071 -58391712 + B1F SINE Alu 28 120 -29 4 1357 259 296 14 0 chr3 101208009 101208080 -58391703 + ID_B1 SINE B4 136 207 -17 4 1357 278 289 26 0 chr3 101208333 101208409 -58391374 - ID4_ SINE ID -4 79 2 4 1357 187 219 149 58 chr3 101208604 101208691 -58391092 + L3 LINE CR1 3947 4041 -448 4 1357 435 316 0 22 chr3 101208866 101209005 -58390778 + CT-rich Low_complexity Low_complexity 1 136 0 4 1357 256 269 9 13 chr3 101209005 101209109 -58390674 - ID4 SINE ID -49 103 1 4 1357 181 93 68 23 chr3 101209213 101209257 -58390526 + G-rich Low_complexity Low_complexity 2 47 0 4 1357 195 129 0 0 chr3 101209772 101209803 -58389980 + (TTCA)n Simple_repeat Simple_repeat 1 31 0 4 1357 216 0 0 0 chr3 101211098 101211122 -58388661 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 4 1357 873 40 56 0 chr3 101211122 101211247 -58388536 - B1_Mus1 SINE Alu -11 137 6 4 1357 422 191 84 155 chr3 101211126 101211281 -58388502 - B4 SINE B4 -81 211 68 4 1357 346 293 82 15 chr3 101211329 101211493 -58388290 - MLT1G LTR MaLR -316 275 103 4 1357 515 78 13 0 chr3 101211872 101211949 -58387834 + (TTTTC)n Simple_repeat Simple_repeat 2 79 0 4 1357 605 200 64 7 chr3 101212119 101212260 -58387523 + B1_Mur2 SINE Alu 1 149 0 4 1357 205 51 0 49 chr3 101212262 101212303 -58387480 + (CAAAAA)n Simple_repeat Simple_repeat 3 41 0 4 1357 30 0 0 0 chr3 101212823 101212853 -58386930 + AT_rich Low_complexity Low_complexity 1 30 0 4 1357 207 0 0 0 chr3 101213573 101213596 -58386187 + (T)n Simple_repeat Simple_repeat 1 23 0 4 1357 246 62 0 0 chr3 101213920 101213952 -58385831 + (A)n Simple_repeat Simple_repeat 1 32 0 4 1357 1377 149 8 16 chr3 101215235 101215487 -58384296 - RLTR28 LTR ERVL -204 320 71 4 1357 1702 91 108 69 chr3 101215491 101215797 -58383986 - ORR1A3 LTR MaLR -8 318 1 4 1357 269 73 24 0 chr3 101215810 101215851 -58383932 - RLTR28 LTR ERVL -439 42 1 4 1357 279 220 91 24 chr3 101216481 101216580 -58383203 + PB1D9 SINE Alu 48 149 -1 4 1357 221 190 0 17 chr3 101216914 101216973 -58382810 + T-rich Low_complexity Low_complexity 3 60 0 4 1357 983 48 0 0 chr3 101216977 101217103 -58382680 - B1_Mus1 SINE Alu -5 143 18 4 1357 21 0 0 0 chr3 101217656 101217677 -58382106 + GC_rich Low_complexity Low_complexity 1 21 0 4 1357 423 195 0 13 chr3 101218069 101218147 -58381636 - PB1D10 SINE Alu -10 107 31 4 1357 718 89 18 0 chr3 101218177 101218289 -58381494 + (TCC)n Simple_repeat Simple_repeat 2 115 0 4 1357 445 212 113 27 chr3 101218904 101219054 -58380729 + RSINE1 SINE B4 3 165 0 4 1357 583 300 81 111 chr3 101219154 101219732 -58380051 - RLTR18 LTR ERVK -25 591 31 4 1357 796 275 14 19 chr3 101221437 101221652 -58378131 - B3 SINE B2 -2 214 1 4 1357 268 228 18 0 chr3 101222756 101222813 -58376970 - MLT1F LTR MaLR 0 579 522 4 1357 183 270 53 26 chr3 101223433 101223509 -58376274 + MIRb SINE MIR 92 169 -99 4 1357 219 69 0 0 chr3 101224005 101224034 -58375749 + (TATG)n Simple_repeat Simple_repeat 4 32 0 4 1357 1001 185 34 5 chr3 101224127 101224333 -58375450 - B3 SINE B2 -4 212 1 4 1357 579 191 35 0 chr3 101224345 101224460 -58375323 - B4 SINE B4 -72 220 102 4 1357 1086 65 0 0 chr3 101224469 101224607 -58375176 + B1_Mus1 SINE Alu 2 139 -9 4 1357 213 65 0 0 chr3 101224607 101224638 -58375145 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 4 1357 635 131 16 39 chr3 101224681 101224808 -58374975 - B1_Mus1 SINE Alu 0 148 25 4 1357 333 298 12 0 chr3 101224781 101224865 -58374918 - B4 SINE B4 -206 86 2 4 1357 207 0 0 0 chr3 101225395 101225418 -58374365 + (TATG)n Simple_repeat Simple_repeat 2 24 0 4 1357 501 312 74 48 chr3 101225438 101225707 -58374076 - MLT1F LTR MaLR -49 499 224 4 1357 558 180 26 92 chr3 101225944 101226097 -58373686 - B1F2 SINE Alu -5 144 2 4 1357 402 278 15 22 chr3 101226107 101226243 -58373540 - MER21B LTR ERV1 -554 309 175 4 1357 434 219 18 62 chr3 101226933 101227045 -58372738 + PB1D10 SINE Alu 10 116 -1 4 1357 190 91 43 43 chr3 101227512 101227558 -58372225 + (TCTCTG)n Simple_repeat Simple_repeat 2 47 0 4 1357 273 57 0 0 chr3 101227561 101227596 -58372187 + (TCTCCC)n Simple_repeat Simple_repeat 5 39 0 4 1357 467 287 0 65 chr3 101227620 101227758 -58372025 - B4A SINE B4 -1 291 163 4 1357 198 297 15 15 chr3 101227934 101227999 -58371784 - MIR3 SINE MIR -32 176 112 4 1357 21 0 0 0 chr3 101229214 101229235 -58370548 + AT_rich Low_complexity Low_complexity 1 21 0 4 1357 348 202 14 20 chr3 101230010 101230101 -58369682 + B1F SINE Alu 2 90 -224 4 1357 386 258 215 46 chr3 101230240 101230500 -58369283 - LTR48B LTR ERV1 -103 541 238 4 1357 729 242 82 11 chr3 101231662 101231846 -58367937 + B3 SINE B2 1 197 -19 4 1357 777 39 0 0 chr3 101232336 101232438 -58367345 - B1_Mus2 SINE Alu 0 147 46 4 1357 332 105 35 0 chr3 101232438 101232495 -58367288 - RLTR11A LTR ERVK -1 527 469 4 1357 360 0 0 0 chr3 101233908 101233948 -58365835 + (TG)n Simple_repeat Simple_repeat 2 41 0 4 1357 342 0 0 0 chr3 101236492 101236530 -58363253 + (CA)n Simple_repeat Simple_repeat 2 39 0 5 1357 381 366 15 0 chr3 101236696 101236901 -58362882 - L3 LINE CR1 -2233 2256 2049 5 1357 221 267 0 62 chr3 101237652 101237716 -58362067 + ID4_ SINE ID 17 76 -7 5 1357 197 345 151 0 chr3 101238315 101238454 -58361329 - MIRb SINE MIR -11 257 98 5 1357 360 0 0 0 chr3 101238700 101238740 -58361043 + (CA)n Simple_repeat Simple_repeat 2 41 0 5 1357 661 265 85 27 chr3 101239714 101239974 -58359809 + B4A SINE B4 18 292 0 5 1357 326 248 74 8 chr3 101240070 101240192 -58359591 - LTR33 LTR ERVL -58 457 328 5 1357 1021 163 118 5 chr3 101242092 101242295 -58357488 + URR1A DNA MER1_type 1 226 0 5 1357 277 277 12 0 chr3 101244144 101244227 -58355556 - L1MC4 LINE L1 -216 7826 7743 5 1357 183 42 0 0 chr3 101244669 101244693 -58355090 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 5 1357 370 270 77 31 chr3 101246823 101246953 -58352830 - MIR SINE MIR -124 138 3 5 1357 453 110 0 0 chr3 101247019 101247092 -58352691 + (TG)n Simple_repeat Simple_repeat 1 73 0 5 1357 189 107 0 0 chr3 101247092 101247120 -58352663 + (GA)n Simple_repeat Simple_repeat 1 28 0 5 1357 209 224 118 0 chr3 101248908 101248984 -58350799 + MIR SINE MIR 129 213 -49 5 1357 463 290 111 0 chr3 101249091 101249253 -58350530 - B3A SINE B2 -16 182 3 5 1357 411 218 0 0 chr3 101249416 101249494 -58350289 - PB1D10 SINE Alu -39 78 1 5 1357 244 209 172 11 chr3 101251416 101251503 -58348280 - MER5A1 DNA MER1_type -41 125 25 5 1357 1011 179 60 20 chr3 101251521 101251721 -58348062 - B3 SINE B2 0 216 9 5 1357 211 274 85 106 chr3 101251737 101251925 -58347858 - B2_Mm2 SINE B2 -1 194 11 5 1357 628 245 35 70 chr3 101251765 101251936 -58347847 - RSINE1 SINE B4 0 165 1 5 1357 687 113 17 34 chr3 101252030 101252149 -58347634 + B1_Mur3 SINE Alu 33 149 0 5 1357 186 291 99 91 chr3 101253927 101254048 -58345735 + L2b LINE L2 3212 3333 -42 5 1357 450 0 0 0 chr3 101255280 101255330 -58344453 + (CA)n Simple_repeat Simple_repeat 2 51 0 5 1357 396 0 0 0 chr3 101255403 101255447 -58344336 + (CA)n Simple_repeat Simple_repeat 2 45 0 5 1357 234 167 0 0 chr3 101256520 101256580 -58343203 + (CA)n Simple_repeat Simple_repeat 2 61 0 5 1357 322 306 41 0 chr3 101256872 101256993 -58342790 - B1F1 SINE Alu -16 133 8 5 1357 260 328 43 21 chr3 101256993 101257012 -58342771 - ID_B1 SINE B4 -16 208 66 5 1357 318 50 0 0 chr3 101257460 101257500 -58342283 + (CA)n Simple_repeat Simple_repeat 2 41 0 5 1357 406 250 16 39 chr3 101258037 101258166 -58341617 + ID_B1 SINE B4 91 216 -8 5 1357 1966 138 33 33 chr3 101258198 101258399 -58341384 - ORR1D1 LTR MaLR -8 366 161 5 1357 242 100 0 39 chr3 101258399 101258451 -58341332 + (CAGA)n Simple_repeat Simple_repeat 3 52 0 5 1357 1966 138 33 33 chr3 101258451 101258615 -58341168 - ORR1D1 LTR MaLR -214 160 2 5 1357 222 254 34 0 chr3 101258619 101258678 -58341105 + BC1_Mm scRNA scRNA 14 74 -78 5 1357 883 205 241 41 chr3 101259484 101259800 -58339983 - MTEa LTR MaLR 0 379 1 5 1357 194 0 0 37 chr3 101260638 101260665 -58339118 + (CTG)n Simple_repeat Simple_repeat 1 26 0 5 1357 204 111 0 0 chr3 101261005 101261041 -58338742 + (TTTA)n Simple_repeat Simple_repeat 4 39 0 5 1357 677 172 35 0 chr3 101261049 101261165 -58338618 - B1_Mur2 SINE Alu -11 138 19 5 1357 427 279 163 5 chr3 101261174 101261358 -58338425 - B3 SINE B2 0 216 4 5 1357 280 332 4 144 chr3 101261358 101261475 -58338308 - B4A SINE B4 -188 104 8 5 1357 207 69 0 0 chr3 101261718 101261747 -58338036 + (GGA)n Simple_repeat Simple_repeat 2 30 0 5 1357 318 50 0 0 chr3 101264498 101264538 -58335245 + (T)n Simple_repeat Simple_repeat 1 40 0 5 1357 23 0 0 0 chr3 101264780 101264803 -58334980 + AT_rich Low_complexity Low_complexity 1 23 0 5 1357 237 132 0 0 chr3 101265360 101265398 -58334385 + (TG)n Simple_repeat Simple_repeat 2 39 0 5 1357 224 91 0 22 chr3 101266252 101266297 -58333486 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 5 1357 231 96 38 19 chr3 101267455 101267508 -58332275 + CT-rich Low_complexity Low_complexity 4 57 0 5 1357 183 234 64 0 chr3 101268553 101268600 -58331183 + MIRm SINE MIR 97 146 -130 5 1357 279 340 19 0 chr3 101270139 101270242 -58329541 - RMER20B LTR ERVK -263 364 260 5 1357 389 319 74 12 chr3 101270374 101270536 -58329247 - RMER15 LTR ERVL -39 536 365 5 1357 207 0 0 0 chr3 101270907 101270930 -58328853 + (TTG)n Simple_repeat Simple_repeat 2 24 0 5 1357 233 358 64 16 chr3 101271155 101271280 -58328503 + MIR SINE MIR 8 138 -124 5 1357 318 178 0 0 chr3 101271292 101271382 -58328401 + (CAGA)n Simple_repeat Simple_repeat 4 93 0 5 1357 369 262 39 47 chr3 101271525 101271653 -58328130 - RLTR42-int LTR ERVK -4122 1400 1274 5 1357 1269 251 61 59 chr3 101272031 101272472 -58327311 + Lx9 LINE L1 6959 7400 -244 5 1357 439 280 40 8 chr3 101272477 101272603 -58327180 - RMER10B LTR ERVL 0 398 269 5 1357 664 235 54 27 chr3 101272852 101273075 -58326708 + Lx9 LINE L1 7392 7620 -24 5 1357 183 80 0 0 chr3 101273180 101273205 -58326578 + (TCCC)n Simple_repeat Simple_repeat 1 25 0 5 1357 915 98 0 0 chr3 101273205 101273337 -58326446 + (TTTC)n Simple_repeat Simple_repeat 3 134 0 5 1357 475 86 99 0 chr3 101273342 101273423 -58326360 - B1_Mus2 SINE Alu -17 130 42 5 1357 247 188 114 38 chr3 101273362 101273467 -58326316 - RLTR25B LTR ERVK -519 509 397 5 1357 352 151 0 0 chr3 101273560 101273613 -58326170 - B1_Mus1 SINE Alu -93 55 3 5 1357 1114 213 9 0 chr3 101274088 101274299 -58325484 - B3 SINE B2 0 216 4 5 1357 370 330 0 0 chr3 101274351 101274445 -58325338 - PB1 SINE Alu -31 96 3 5 1357 212 283 0 32 chr3 101274456 101274518 -58325265 - MIRc SINE MIR -123 145 86 5 1357 1688 256 99 23 chr3 101275335 101275900 -58323883 + RMER15-int LTR ERVL 4163 4770 -229 5 1357 765 61 0 0 chr3 101276161 101276260 -58323523 + (TTCC)n Simple_repeat Simple_repeat 4 102 0 5 1357 977 102 24 0 chr3 101276268 101276434 -58323349 + (TCC)n Simple_repeat Simple_repeat 3 172 0 5 1357 219 220 0 0 chr3 101276963 101277013 -58322770 + (CA)n Simple_repeat Simple_repeat 2 51 0 5 1357 413 211 0 0 chr3 101277283 101277359 -58322424 + ID4 SINE ID 5 80 -3 5 1357 2182 124 13 3 chr3 101277913 101278229 -58321554 + ORR1A2 LTR MaLR 1 319 -8 5 1357 10951 104 117 30 chr3 101278233 101278933 -58320850 + ORR1A2-int LTR MaLR 1 866 -1097 5 1357 1080 88 0 7 chr3 101278933 101279071 -58320712 + B1_Mus1 SINE Alu 1 137 -11 5 1357 189 0 0 0 chr3 101279071 101279092 -58320691 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 5 1357 10951 104 117 30 chr3 101279092 101280196 -58319587 + ORR1A2-int LTR MaLR 867 1962 -1 5 1357 2144 116 55 0 chr3 101280196 101280506 -58319277 + ORR1A2 LTR MaLR 1 327 0 5 1357 386 298 132 17 chr3 101280510 101280684 -58319099 - MER33 DNA MER1_type -130 194 1 5 1357 1884 71 16 0 chr3 101280728 101280981 -58318802 + L1Md_F2 LINE L1 6326 6582 0 5 1357 989 116 20 7 chr3 101280988 101281135 -58318648 + B1_Mur4 SINE Alu 1 149 -1 5 1357 766 230 18 18 chr3 101281210 101281374 -58318409 + B3A SINE B2 2 165 -33 5 1357 405 0 0 0 chr3 101281387 101281432 -58318351 + (TG)n Simple_repeat Simple_repeat 2 46 0 5 1357 2415 139 27 3 chr3 101281783 101282152 -58317631 + ORR1C1 LTR MaLR 1 378 0 5 1357 358 349 65 65 chr3 101282174 101282496 -58317287 + L2a LINE L2 3103 3424 -2 5 1357 273 276 70 20 chr3 101282499 101282599 -58317184 + MIR SINE MIR 151 255 -7 5 1357 851 286 45 66 chr3 101283174 101283512 -58316271 - MTEa LTR MaLR -44 375 44 5 1357 1085 133 27 27 chr3 101283512 101283698 -58316085 - B2_Mm2 SINE B2 -9 186 1 5 1357 429 335 62 96 chr3 101283698 101283746 -58316037 - MTEa LTR MaLR -376 43 3 5 1357 1232 48 7 0 chr3 101283747 101283892 -58315891 + B1_Mus2 SINE Alu 2 147 0 5 1357 238 209 102 21 chr3 101284272 101284360 -58315423 - B1_Mur1 SINE Alu -5 144 40 5 1357 491 276 178 0 chr3 101284933 101285107 -58314676 + B3 SINE B2 1 205 -11 5 1357 742 245 0 0 chr3 101285216 101285355 -58314428 + B1_Mur2 SINE Alu 5 143 -6 5 1357 417 219 105 0 chr3 101285357 101285462 -58314321 + RMER1A Other Other 98 213 -817 5 1357 405 0 0 0 chr3 101285466 101285511 -58314272 + (TG)n Simple_repeat Simple_repeat 1 45 0 5 1357 1240 225 50 163 chr3 101285533 101286134 -58313649 + RMER1A Other Other 21 553 -477 5 1357 3574 141 190 80 chr3 101286136 101286948 -58312835 + RMER19B LTR ERVK 2 902 0 5 1357 499 90 0 0 chr3 101286961 101287028 -58312755 + MTC LTR MaLR 355 421 0 5 1357 1049 276 102 33 chr3 101287053 101287205 -58312578 + MER82 DNA MER2_type 34 182 -471 5 1357 1267 238 75 36 chr3 101287205 101287341 -58312442 + MTEa LTR MaLR 4 155 -224 5 1357 396 0 0 0 chr3 101287341 101287385 -58312398 + (TG)n Simple_repeat Simple_repeat 2 45 0 5 1357 1267 238 75 36 chr3 101287385 101287610 -58312173 + MTEa LTR MaLR 156 379 0 5 1357 1049 276 102 33 chr3 101287610 101287821 -58311962 + MER82 DNA MER2_type 183 421 -232 5 1357 1505 38 16 16 chr3 101287857 101288043 -58311740 + B2_Mm2 SINE B2 1 186 -9 5 1357 351 0 0 0 chr3 101288096 101288135 -58311648 + (TG)n Simple_repeat Simple_repeat 1 39 0 5 1357 880 224 0 6 chr3 101288137 101288294 -58311489 - B3A SINE B2 -42 156 1 5 1357 366 250 21 21 chr3 101288310 101288404 -58311379 - PB1D10 SINE Alu -1 116 23 5 1357 1395 64 12 0 chr3 101289363 101289536 -58310247 - B2_Mm1t SINE B2 -18 175 1 5 1357 759 259 0 0 chr3 101289568 101289715 -58310068 + B1_Mur1 SINE Alu 1 147 -2 5 1357 396 0 0 0 chr3 101289731 101289775 -58310008 + (CA)n Simple_repeat Simple_repeat 1 44 0 5 1357 1014 190 35 15 chr3 101290083 101290281 -58309502 - B3 SINE B2 -1 215 14 5 1357 34 24 0 0 chr3 101290654 101290695 -58309088 + AT_rich Low_complexity Low_complexity 1 41 0 5 1357 441 216 65 29 chr3 101291466 101291604 -58308179 + B1F1 SINE Alu 4 146 -3 6 1357 326 253 12 48 chr3 101291613 101291696 -58308087 + ID4_ SINE ID 2 81 -2 6 1357 927 249 30 0 chr3 101291726 101291927 -58307856 + ID_B1 SINE B4 5 211 -13 6 1357 194 294 104 38 chr3 101292087 101292193 -58307590 - L2a LINE L2 -30 3396 3284 6 1357 1539 227 12 63 chr3 101292453 101292657 -58307126 + MTEa LTR MaLR 1 200 -179 6 1357 1184 88 0 0 chr3 101292657 101292804 -58306979 + B1_Mus2 SINE Alu 1 147 0 6 1357 1539 227 12 63 chr3 101292804 101292998 -58306785 + MTEa LTR MaLR 201 379 0 6 1357 513 270 56 0 chr3 101293868 101293994 -58305789 + ID_B1 SINE B4 1 133 -91 6 1357 507 360 76 57 chr3 101294286 101294901 -58304882 + Tigger13a DNA MER2_type 36 662 -109 6 1357 240 220 119 0 chr3 101294948 101295007 -58304776 + MIRc SINE MIR 85 150 -118 6 1357 229 195 0 0 chr3 101295044 101295085 -58304698 + CT-rich Low_complexity Low_complexity 2 42 0 6 1357 354 65 0 46 chr3 101295085 101295150 -58304633 + (TCC)n Simple_repeat Simple_repeat 1 62 0 6 1357 247 315 231 0 chr3 101295692 101295800 -58303983 - Tigger5 DNA MER2_type -2270 136 4 6 1357 403 273 10 0 chr3 101297280 101297379 -58302404 + PB1D10 SINE Alu 9 108 -9 6 1357 357 254 244 8 chr3 101297398 101297521 -58302262 + RSINE1 SINE B4 2 153 -12 6 1357 444 219 90 9 chr3 101298333 101298472 -58301311 + MIR3 SINE MIR 37 181 -27 6 1357 2660 137 27 2 chr3 101298491 101298901 -58300882 - MTC LTR MaLR 0 421 2 6 1357 276 139 0 0 chr3 101298958 101299001 -58300782 - Cheshire DNA MER1_type 0 2420 2378 6 1357 300 158 0 109 chr3 101299006 101299070 -58300713 - Cheshire DNA MER1_type -2197 223 167 6 1357 1079 79 43 0 chr3 101299258 101299397 -58300386 + B1_Mus2 SINE Alu 1 145 -2 6 1357 270 284 39 51 chr3 101299408 101299486 -58300297 + B1F SINE Alu 43 119 -30 6 1357 227 373 51 47 chr3 101299543 101299779 -58300004 - L2 LINE L2 -410 3009 2773 6 1357 1040 198 67 105 chr3 101299891 101300264 -58299519 + RLTR15 LTR ERVK 1 359 0 6 1357 232 360 29 20 chr3 101300698 101300800 -58298983 - MER5B DNA MER1_type -1 177 75 6 1357 268 282 43 51 chr3 101302728 101302866 -58296917 + Lx8 LINE L1 7143 7279 -194 6 1357 252 0 0 0 chr3 101303001 101303029 -58296754 + (TG)n Simple_repeat Simple_repeat 2 29 0 6 1357 189 0 0 0 chr3 101303244 101303265 -58296518 + (TG)n Simple_repeat Simple_repeat 2 22 0 6 1357 201 321 50 58 chr3 101305026 101305165 -58294618 + MIR3 SINE MIR 7 144 -64 6 1357 274 31 0 0 chr3 101305331 101305363 -58294420 + (CCCCCT)n Simple_repeat Simple_repeat 2 33 0 6 1357 267 239 0 0 chr3 101305363 101305430 -58294353 + CT-rich Low_complexity Low_complexity 2 68 0 6 1357 764 135 0 15 chr3 101305451 101305586 -58294197 + CT-rich Low_complexity Low_complexity 3 135 0 6 1357 751 293 28 24 chr3 101305597 101305810 -58293973 - ID_B1 SINE B4 -8 216 3 6 1357 630 264 13 7 chr3 101306748 101306897 -58292886 + B3A SINE B2 7 156 -42 6 1357 282 95 0 0 chr3 101306899 101306941 -58292842 + (CA)n Simple_repeat Simple_repeat 1 42 0 6 1357 476 315 65 15 chr3 101307732 101307932 -58291851 + MLT1J LTR MaLR 247 456 -56 6 1357 230 212 158 24 chr3 101308337 101308357 -58291426 + MT2B2 LTR ERVL 148 178 -406 6 1357 298 250 208 42 chr3 101308357 101308453 -58291330 + PB1D10 SINE Alu 1 112 -5 6 1357 725 171 56 21 chr3 101308754 101308897 -58290886 - B1_Mur2 SINE Alu 0 149 2 6 1357 3200 77 71 11 chr3 101309134 101309582 -58290201 - IAPLTR2_Mm LTR ERVK 0 475 1 6 1357 370 275 0 0 chr3 101309926 101310006 -58289777 - MER63B DNA AcHobo -50 386 307 6 1357 180 0 0 0 chr3 101310475 101310495 -58289288 + (CA)n Simple_repeat Simple_repeat 2 21 0 6 1357 258 32 0 0 chr3 101310719 101310750 -58289033 + (TG)n Simple_repeat Simple_repeat 2 32 0 6 1357 1046 224 93 8 chr3 101311967 101312224 -58287559 + B4A SINE B4 1 279 -13 6 1357 207 139 0 0 chr3 101312260 101312296 -58287487 + (CA)n Simple_repeat Simple_repeat 1 36 0 6 1357 793 177 28 14 chr3 101312741 101312884 -58286899 - B1_Mur2 SINE Alu -1 148 4 6 1357 1177 86 60 54 chr3 101312895 101313080 -58286703 - B2_Mm2 SINE B2 -9 186 1 6 1357 792 222 46 41 chr3 101313086 101313283 -58286500 - B3A SINE B2 0 198 1 6 1357 195 42 0 0 chr3 101313316 101313340 -58286443 + (TTA)n Simple_repeat Simple_repeat 2 25 0 6 1357 516 260 0 0 chr3 101313340 101313436 -58286347 - PB1D7 SINE Alu -12 108 13 6 1357 198 0 0 0 chr3 101313470 101313492 -58286291 + (TCCC)n Simple_repeat Simple_repeat 2 23 0 6 1357 289 241 146 22 chr3 101313504 101313593 -58286190 - PB1D10 SINE Alu -13 104 5 6 1357 231 212 13 143 chr3 101314088 101314103 -58285680 - BC1_Mm scRNA scRNA -69 83 17 6 1357 255 207 16 65 chr3 101314103 101314165 -58285618 - tRNA-Ala-GCY_ tRNA tRNA -6 69 11 6 1357 526 300 103 97 chr3 101314490 101315006 -58284777 + L1MD2 LINE L1 5782 6300 -59 6 1357 416 286 70 48 chr3 101315093 101315280 -58284503 + ORR1E LTR MaLR 24 214 -145 6 1357 889 203 187 0 chr3 101315297 101315479 -58284304 - B3 SINE B2 0 216 1 6 1357 23 0 0 0 chr3 101315736 101315759 -58284024 + AT_rich Low_complexity Low_complexity 1 23 0 6 1357 244 266 116 64 chr3 101316256 101316429 -58283354 - L1M4 LINE L1 -283 5895 5714 6 1357 1371 98 5 20 chr3 101316516 101316714 -58283069 + B2_Mm2 SINE B2 1 195 0 6 1357 191 250 72 93 chr3 101318158 101318255 -58281528 + MIR SINE MIR 27 121 -141 6 1358 1334 80 34 0 chr3 101318729 101318904 -58280879 + B2_Mm1t SINE B2 1 181 -12 6 1358 490 73 319 26 chr3 101318972 101319085 -58280698 + B2_Mm2 SINE B2 47 192 -3 6 1358 383 263 113 35 chr3 101319099 101319241 -58280542 - ORR1E LTR MaLR -169 190 38 6 1358 1284 162 46 0 chr3 101320150 101320366 -58279417 + URR1A DNA MER1_type 1 226 0 6 1358 226 250 115 0 chr3 101320898 101320950 -58278833 - MER68 LTR ERVL -475 88 31 6 1358 240 365 29 0 chr3 101321720 101321824 -58277959 + MIR SINE MIR 67 173 -89 6 1358 180 246 104 30 chr3 101321894 101321961 -58277822 + L2 LINE L2 452 523 -2896 6 1358 758 171 57 7 chr3 101322057 101322198 -58277585 + B1_Mur4 SINE Alu 2 149 -1 6 1358 1279 160 14 0 chr3 101322288 101322500 -58277283 - URR1B DNA MER1_type 0 225 11 6 1358 240 374 35 21 chr3 101322530 101322672 -58277111 + MIRb SINE MIR 110 253 -15 6 1358 324 83 0 0 chr3 101323178 101323226 -58276557 + (TG)n Simple_repeat Simple_repeat 2 49 0 6 1358 377 292 31 0 chr3 101323228 101323324 -58276459 - B1F1 SINE Alu -39 110 12 6 1358 565 252 25 67 chr3 101323722 101323841 -58275942 + PB1 SINE Alu 6 119 -1 6 1358 219 214 17 67 chr3 101323858 101323918 -58275865 + B2_Mm1t SINE B2 16 72 -121 6 1358 362 302 92 8 chr3 101323889 101324009 -58275774 + B3 SINE B2 86 215 -1 6 1358 474 305 58 35 chr3 101324845 101325018 -58274765 - Tigger5 DNA MER2_type -2202 204 28 6 1358 245 83 0 40 chr3 101325041 101325091 -58274692 + (CAAAAA)n Simple_repeat Simple_repeat 2 49 0 6 1358 911 210 47 42 chr3 101325291 101325505 -58274278 + B3 SINE B2 2 216 0 6 1358 566 156 63 49 chr3 101325630 101325772 -58274011 - B2_Mm2 SINE B2 -1 194 51 6 1358 2177 112 13 3 chr3 101325735 101326049 -58273734 - ORR1A3 LTR MaLR -7 319 3 6 1358 559 255 54 33 chr3 101326612 101326803 -58272980 + L2b LINE L2 3200 3387 0 6 1358 948 260 55 28 chr3 101327351 101327715 -58272068 + L1M2 LINE L1 5422 5795 -505 6 1358 493 237 28 82 chr3 101327727 101327914 -58271869 - MTEb LTR MaLR -5 374 210 6 1358 1244 54 0 0 chr3 101327965 101328112 -58271671 + B1_Mm SINE Alu 1 147 0 6 1358 191 342 178 13 chr3 101328208 101328365 -58271418 + MIRc SINE MIR 86 268 0 6 1358 2667 191 55 12 chr3 101328936 101329513 -58270270 + RMER1C Other Other 724 1325 -17 6 1358 252 86 0 0 chr3 101329696 101329731 -58270052 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 6 1358 327 104 0 0 chr3 101329851 101329899 -58269884 + (TC)n Simple_repeat Simple_repeat 1 48 0 6 1358 1242 41 0 14 chr3 101329975 101330123 -58269660 + B1_Mus2 SINE Alu 1 146 -1 6 1358 569 241 150 0 chr3 101330196 101330329 -58269454 - B3A SINE B2 -45 153 1 6 1358 790 219 10 46 chr3 101330346 101330542 -58269241 - B3A SINE B2 -7 191 3 6 1358 205 208 0 59 chr3 101331256 101331352 -58268431 + (CACCAT)n Simple_repeat Simple_repeat 1 90 0 6 1358 465 282 18 0 chr3 101331494 101331604 -58268179 + PB1D10 SINE Alu 1 112 -5 6 1358 516 156 0 0 chr3 101331606 101331696 -58268087 + GA-rich Low_complexity Low_complexity 4 93 0 6 1358 318 148 0 0 chr3 101331683 101331737 -58268046 + (GGGGA)n Simple_repeat Simple_repeat 3 56 0 6 1358 257 221 26 13 chr3 101332723 101332801 -58266982 + L1MB2 LINE L1 6089 6167 -4 6 1358 1034 201 9 70 chr3 101332868 101333098 -58266685 - B3 SINE B2 0 216 1 6 1358 201 143 0 45 chr3 101333117 101333161 -58266622 + A-rich Low_complexity Low_complexity 5 46 0 6 1358 301 247 12 12 chr3 101333253 101333335 -58266448 - ID4_ SINE ID 0 83 2 6 1358 310 346 70 40 chr3 101333896 101334095 -58265688 + MIRb SINE MIR 18 222 -46 6 1358 512 284 112 10 chr3 101334402 101334598 -58265185 - ID_B1 SINE B4 -7 217 2 6 1358 253 235 57 34 chr3 101334677 101334765 -58265018 + MER53 DNA hAT 14 103 -90 6 1358 304 235 62 0 chr3 101334693 101334774 -58265009 - MER53 DNA hAT -19 174 89 6 1358 338 278 120 65 chr3 101335714 101335931 -58263852 + MIRb SINE MIR 24 238 -30 7 1358 1309 192 4 22 chr3 101336757 101337029 -58262754 + RMER10B LTR ERVL 1 267 -131 7 1358 183 114 0 0 chr3 101337031 101337066 -58262717 + (TCTA)n Simple_repeat Simple_repeat 2 36 0 7 1358 1242 100 0 0 chr3 101337087 101337267 -58262516 + (TCTCC)n Simple_repeat Simple_repeat 1 180 0 7 1358 318 222 0 0 chr3 101337270 101337324 -58262459 + B4A SINE B4 85 138 -154 7 1358 24 0 0 0 chr3 101337636 101337660 -58262123 + AT_rich Low_complexity Low_complexity 1 24 0 7 1358 558 287 129 43 chr3 101337713 101337946 -58261837 + ORR1E LTR MaLR 3 255 -104 7 1358 1163 278 77 13 chr3 101338437 101338750 -58261033 + MTEa LTR MaLR 2 334 -45 7 1358 1036 157 0 0 chr3 101338938 101339085 -58260698 + B1_Mur2 SINE Alu 3 149 0 7 1358 207 119 0 67 chr3 101339252 101339278 -58260505 + T-rich Low_complexity Low_complexity 19 42 0 7 1358 288 0 0 0 chr3 101339278 101339310 -58260473 + (TA)n Simple_repeat Simple_repeat 2 33 0 7 1358 207 119 0 67 chr3 101339310 101339328 -58260455 + T-rich Low_complexity Low_complexity 1 18 0 7 1358 1211 49 14 0 chr3 101339328 101339472 -58260311 - B1_Mm SINE Alu 0 147 2 7 1358 1180 109 119 0 chr3 101339559 101339760 -58260023 - URR1A DNA MER1_type -1 225 1 7 1358 1687 174 204 50 chr3 101339832 101340273 -58259510 + MT2B2 LTR ERVL 1 509 -75 7 1358 401 250 12 0 chr3 101341244 101341324 -58258459 + B3A SINE B2 5 85 -113 7 1358 455 48 16 0 chr3 101341463 101341525 -58258258 + (TC)n Simple_repeat Simple_repeat 2 64 0 7 1358 719 155 34 6 chr3 101341543 101341641 -58258142 + polypyrimidine Low_complexity Low_complexity 77 180 0 7 1358 1266 90 0 0 chr3 101341641 101341819 -58257964 + (TTCTCC)n Simple_repeat Simple_repeat 1 178 0 7 1358 719 155 34 6 chr3 101341819 101341895 -58257888 + polypyrimidine Low_complexity Low_complexity 1 76 0 7 1358 522 277 29 51 chr3 101343360 101343497 -58256286 + ID_B1 SINE B4 79 212 -12 7 1358 386 277 60 30 chr3 101343377 101343511 -58256272 + B1_Mur4 SINE Alu 13 150 0 7 1358 473 176 22 33 chr3 101343524 101343706 -58256077 + (TG)n Simple_repeat Simple_repeat 1 180 0 7 1358 296 144 38 70 chr3 101343756 101343942 -58255841 + (TG)n Simple_repeat Simple_repeat 1 180 0 7 1358 1086 207 89 57 chr3 101343942 101344224 -58255559 - B4A SINE B4 0 292 2 7 1358 480 247 0 0 chr3 101344373 101344462 -58255321 - PB1D10 SINE Alu -8 109 21 7 1358 21 36 0 0 chr3 101344471 101344499 -58255284 + AT_rich Low_complexity Low_complexity 1 28 0 7 1358 244 222 82 20 chr3 101344533 101344601 -58255182 - MIRc SINE MIR -104 158 89 7 1358 776 273 57 0 chr3 101345775 101345969 -58253814 - ID_B1 SINE B4 -15 209 5 7 1358 372 172 0 0 chr3 101346166 101346224 -58253559 + ORR1D1 LTR MaLR 317 374 0 7 1358 944 159 0 137 chr3 101346964 101347183 -58252600 + MTC LTR MaLR 1 189 -218 7 1358 1136 69 7 20 chr3 101347186 101347334 -58252449 + B1_Mus2 SINE Alu 2 147 0 7 1358 234 152 0 0 chr3 101347337 101347396 -58252387 + A-rich Low_complexity Low_complexity 1 59 0 7 1358 224 62 185 0 chr3 101347401 101347466 -58252317 + (CAAAC)n Simple_repeat Simple_repeat 2 78 0 7 1358 1410 173 0 13 chr3 101347471 101347700 -58252083 + MTC LTR MaLR 196 421 0 7 1358 582 131 26 53 chr3 101347699 101347812 -58251971 + MTC-int LTR MaLR 2 111 -1147 7 1358 384 88 0 0 chr3 101347907 101347964 -58251819 + (CA)n Simple_repeat Simple_repeat 1 57 0 7 1358 380 248 50 92 chr3 101348840 101348960 -58250823 + PB1D9 SINE Alu 5 119 -1 7 1358 1339 227 55 76 chr3 101349067 101349449 -58250334 - MTEa LTR MaLR -2 377 4 7 1358 1378 235 120 40 chr3 101349589 101349939 -58249844 + MTE2b LTR MaLR 1 378 -1 7 1358 236 384 20 0 chr3 101350285 101350384 -58249399 - L2a LINE L2 0 3426 3326 7 1358 516 261 0 55 chr3 101350610 101350756 -58249027 - B1_Mur2 SINE Alu -10 139 2 7 1358 850 279 36 32 chr3 101352732 101353010 -58246773 + B4A SINE B4 1 279 -13 7 1358 222 224 20 0 chr3 101353366 101353415 -58246368 + PB1D9 SINE Alu 62 111 -9 7 1358 448 249 42 16 chr3 101353426 101353558 -58246225 + L1MD LINE L1 5676 5811 -431 7 1358 519 318 25 49 chr3 101354254 101354285 -58245498 + CYRA11_Mm Unknown Y-chromosome 150 333 -284 7 1358 1246 142 53 10 chr3 101354285 101354492 -58245291 - URR1A DNA MER1_type -5 221 6 7 1358 233 193 155 12 chr3 101355098 101355182 -58244601 + L2a LINE L2 3056 3151 -275 7 1358 801 168 11 11 chr3 101356449 101356624 -58243159 + CT-rich Low_complexity Low_complexity 3 177 0 7 1358 296 343 55 68 chr3 101356683 101357008 -58242775 - L2a LINE L2 -184 3242 2922 7 1358 411 21 0 0 chr3 101357146 101357194 -58242589 + (TG)n Simple_repeat Simple_repeat 1 48 0 7 1358 470 236 0 0 chr3 101357784 101357873 -58241910 + ID_B1 SINE B4 116 204 -20 7 1358 274 115 16 16 chr3 101357875 101357937 -58241846 + (GA)n Simple_repeat Simple_repeat 2 63 0 7 1358 1272 228 48 0 chr3 101358256 101358550 -58241233 - ERVL-B4-int LTR ERVL -991 4723 4416 7 1358 207 0 0 0 chr3 101358581 101358604 -58241179 + (TG)n Simple_repeat Simple_repeat 2 24 0 7 1358 590 235 28 56 chr3 101359474 101359654 -58240129 - MERVL_2A-int LTR ERVL -4411 1350 1176 7 1358 1196 197 14 5 chr3 101359694 101359908 -58239875 - B3 SINE B2 0 216 1 7 1358 765 266 13 18 chr3 101359911 101360137 -58239646 - MERVL_2A-int LTR ERVL -4574 1187 963 7 1358 823 179 13 0 chr3 101360168 101360319 -58239464 + Lx8 LINE L1 6802 6954 -519 7 1358 1270 138 10 10 chr3 101360342 101360540 -58239243 + RLTR17 LTR ERVK 90 287 -405 7 1358 324 0 0 0 chr3 101360721 101360757 -58239026 + (TG)n Simple_repeat Simple_repeat 1 36 0 7 1358 468 0 0 0 chr3 101361652 101361704 -58238079 + (TG)n Simple_repeat Simple_repeat 1 52 0 7 1358 626 198 0 19 chr3 101362058 101362166 -58237617 + RSINE1 SINE B4 2 107 -58 7 1358 295 338 14 7 chr3 101362492 101362635 -58237148 + CT-rich Low_complexity Low_complexity 2 145 0 7 1358 1141 190 24 14 chr3 101362658 101362866 -58236917 - B3 SINE B2 0 216 7 7 1358 931 349 45 75 chr3 101363272 101363650 -58236133 - MLT1D LTR MaLR -2 503 145 7 1358 3481 30 5 0 chr3 101363650 101364044 -58235739 - MTA_Mm LTR MaLR 0 396 1 7 1358 931 349 45 75 chr3 101364044 101364182 -58235601 - MLT1D LTR MaLR -361 144 3 7 1358 333 0 0 0 chr3 101364477 101364514 -58235269 + (TG)n Simple_repeat Simple_repeat 1 37 0 7 1358 306 0 0 0 chr3 101364514 101364547 -58235236 + (GA)n Simple_repeat Simple_repeat 1 34 0 7 1358 181 342 137 0 chr3 101365346 101365463 -58234320 - MIR SINE MIR -70 192 60 7 1358 239 349 0 0 chr3 101365736 101365799 -58233984 - RSINE1 SINE B4 -17 148 86 7 1358 244 232 71 131 chr3 101365836 101365935 -58233848 - PB1D10 SINE Alu -24 93 1 7 1358 257 245 83 80 chr3 101365935 101366001 -58233782 - ID SINE ID -156 68 2 7 1358 180 228 0 0 chr3 101366332 101366389 -58233394 + (TG)n Simple_repeat Simple_repeat 1 57 0 7 1358 189 258 32 16 chr3 101366843 101366906 -58232877 - MIR SINE MIR -112 96 33 7 1358 239 333 17 34 chr3 101367179 101367297 -58232486 + MER112 DNA MER1_type 7 122 -139 7 1358 280 219 35 0 chr3 101367382 101367447 -58232336 - ID4_ SINE ID -60 92 26 7 1358 23 0 0 0 chr3 101367633 101367656 -58232127 + AT_rich Low_complexity Low_complexity 1 23 0 7 1358 315 0 0 0 chr3 101367707 101367742 -58232041 + (CAAAA)n Simple_repeat Simple_repeat 3 37 0 7 1358 1013 214 29 0 chr3 101367751 101367961 -58231822 + B3 SINE B2 1 216 0 7 1358 819 57 0 0 chr3 101367974 101368079 -58231704 + (GA)n Simple_repeat Simple_repeat 2 106 0 7 1358 394 304 9 35 chr3 101368082 101368198 -58231585 + B3 SINE B2 91 203 -13 7 1358 1124 114 50 28 chr3 101368202 101368383 -58231400 - B2_Mm2 SINE B2 -9 186 2 7 1358 254 333 0 0 chr3 101368443 101368509 -58231274 + ID2 SINE ID 7 72 -11 7 1358 341 311 110 26 chr3 101368992 101369147 -58230636 - MIRc SINE MIR -98 170 3 7 1358 2532 65 6 47 chr3 101369317 101369599 -58230184 + ORR1A2 LTR MaLR 1 270 -57 7 1358 1621 47 0 10 chr3 101369599 101369794 -58229989 + B2_Mm1t SINE B2 1 193 0 7 1358 2532 65 6 47 chr3 101369794 101369852 -58229931 + ORR1A2 LTR MaLR 271 327 0 7 1358 426 229 141 25 chr3 101369957 101370078 -58229705 - ID_B1 SINE B4 0 224 90 7 1358 254 341 0 35 chr3 101370103 101370188 -58229595 + MER20 DNA MER1_type 1 82 -137 7 1358 546 264 68 148 chr3 101370233 101370584 -58229199 + MTEa LTR MaLR 1 323 -56 7 1358 423 0 0 0 chr3 101370587 101370634 -58229149 + (TC)n Simple_repeat Simple_repeat 2 48 0 7 1358 194 105 0 26 chr3 101370736 101370775 -58229008 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 7 1358 3737 130 194 5 chr3 101371429 101372049 -58227734 - RMER19A LTR ERVK 0 737 1 7 1358 294 298 147 29 chr3 101372085 101372289 -58227494 + Lx9 LINE L1 7346 7573 -71 7 1358 578 231 0 27 chr3 101372294 101372405 -58227378 - B1_Mur2 SINE Alu -37 112 5 7 1358 818 255 33 48 chr3 101372418 101372434 -58227349 - B3 SINE B2 -9 207 196 7 1358 252 0 0 0 chr3 101372434 101372462 -58227321 + (TTTA)n Simple_repeat Simple_repeat 4 31 0 7 1358 818 255 33 48 chr3 101372462 101372655 -58227128 - B3 SINE B2 -21 195 1 7 1358 357 244 96 80 chr3 101372886 101373011 -58226772 - MER63B DNA AcHobo -5 431 305 7 1358 193 29 59 0 chr3 101373069 101373103 -58226680 + (TCCC)n Simple_repeat Simple_repeat 1 36 0 7 1358 442 285 22 37 chr3 101373151 101373286 -58226497 - B1F SINE Alu -16 133 1 7 1358 215 209 0 23 chr3 101373287 101373331 -58226452 - MER5A DNA MER1_type -114 75 33 7 1358 1218 47 0 13 chr3 101373439 101373589 -58226194 - B1_Mus1 SINE Alu 0 148 1 7 1358 715 138 46 0 chr3 101374181 101374290 -58225493 - ORR1B2 LTR MaLR -1 366 253 7 1358 1453 154 73 119 chr3 101374292 101374661 -58225122 + RLTR9A LTR ERVK 17 368 0 7 1358 375 78 0 0 chr3 101374688 101374739 -58225044 + (CAGG)n Simple_repeat Simple_repeat 3 53 0 8 1358 1283 118 14 51 chr3 101374739 101374953 -58224830 - ORR1B2 LTR MaLR -155 212 7 7 1358 227 345 92 0 chr3 101375003 101375122 -58224661 - MLT1J1 LTR MaLR -309 135 6 8 1358 468 51 0 0 chr3 101375548 101375607 -58224176 + (CA)n Simple_repeat Simple_repeat 1 59 0 8 1358 204 316 0 0 chr3 101376538 101376595 -58223188 + MIRm SINE MIR 73 129 -147 8 1358 221 296 74 0 chr3 101376726 101376807 -58222976 - MIRb SINE MIR -16 252 166 8 1358 337 222 8 41 chr3 101377623 101377745 -58222038 + (TA)n Simple_repeat Simple_repeat 1 118 0 8 1358 185 158 79 0 chr3 101377903 101377941 -58221842 - L2 LINE L2 -853 2566 2526 8 1358 192 306 23 23 chr3 101378807 101378894 -58220889 + L3 LINE CR1 2828 2914 -1575 8 1358 216 0 0 0 chr3 101380587 101380611 -58219172 + (TG)n Simple_repeat Simple_repeat 2 25 0 8 1358 263 324 55 71 chr3 101383172 101383355 -58216428 + RMER30 DNA MER1_type 13 192 -10 8 1358 183 336 64 108 chr3 101385744 101385901 -58213882 - L4 LINE RTE -732 1297 1148 8 1358 524 280 40 13 chr3 101387152 101387304 -58212479 - RSINE1 SINE B4 -2 163 8 8 1358 333 247 260 17 chr3 101388072 101388245 -58211538 - B3 SINE B2 0 216 2 8 1358 624 62 0 0 chr3 101391653 101391734 -58208049 + (GGAA)n Simple_repeat Simple_repeat 4 84 0 8 1358 1234 48 0 0 chr3 101391964 101392111 -58207672 - B1_Mus2 SINE Alu 0 147 1 8 1358 195 100 0 0 chr3 101392861 101392891 -58206892 + (CCCCCA)n Simple_repeat Simple_repeat 3 32 0 8 1358 754 286 37 1 chr3 101393086 101393281 -58206502 - B3A SINE B2 -13 203 2 8 1358 451 252 199 0 chr3 101393502 101393633 -58206150 + RSINE1 SINE B4 9 165 0 8 1358 187 156 20 82 chr3 101393808 101393857 -58205926 - L3 LINE CR1 -2202 2287 2242 8 1358 1129 183 72 0 chr3 101398395 101398603 -58201180 - URR1A DNA MER1_type -2 224 2 8 1358 626 123 189 39 chr3 101400536 101400663 -58199120 - B1_Mus2 SINE Alu -1 146 1 8 1358 426 213 0 0 chr3 101401978 101402133 -58197650 + (CA)n Simple_repeat Simple_repeat 1 155 0 8 1358 193 217 21 42 chr3 101402419 101402467 -58197316 + MIRc SINE MIR 64 110 -158 8 1358 279 0 0 0 chr3 101404237 101404268 -58195515 + (TG)n Simple_repeat Simple_repeat 1 31 0 8 1358 300 242 0 16 chr3 101406954 101407017 -58192766 + MIR SINE MIR 69 130 -78 8 1358 21 0 0 0 chr3 101408015 101408036 -58191747 + GC_rich Low_complexity Low_complexity 1 21 0 8 1358 26 0 0 0 chr3 101408284 101408310 -58191473 + GC_rich Low_complexity Low_complexity 1 26 0 8 1358 219 139 0 0 chr3 101408497 101408533 -58191250 + (CCG)n Simple_repeat Simple_repeat 2 37 0 8 1358 262 292 45 106 chr3 101409463 101409662 -58190121 - LTR90B LTR LTR -4 792 606 8 1358 460 214 99 76 chr3 101410537 101410709 -58189074 + MT2B LTR ERVL 89 264 -337 8 1358 975 119 14 34 chr3 101410601 101410749 -58189034 + B1_Mur4 SINE Alu 6 150 0 8 1358 474 226 208 8 chr3 101411639 101411764 -58188019 - RSINE1 SINE B4 -13 152 3 8 1358 192 372 0 41 chr3 101411828 101411926 -58187857 - L3b LINE CR1 -376 106 13 8 1358 2528 142 146 51 chr3 101412213 101412747 -58187036 + RMER4B LTR ERVK 1 585 0 8 1358 308 329 19 52 chr3 101414773 101414927 -58184856 - HAL1-2a_MD LINE L1 -498 2526 2378 8 1358 207 0 0 0 chr3 101416830 101416853 -58182930 + (CAAAA)n Simple_repeat Simple_repeat 1 23 0 8 1358 822 151 58 0 chr3 101417098 101417237 -58182546 + B1_Mus2 SINE Alu 1 147 0 8 1358 790 145 13 0 chr3 101417246 101417398 -58182385 + CT-rich Low_complexity Low_complexity 4 157 0 8 1358 232 143 39 58 chr3 101417589 101417641 -58182142 + PB1D9 SINE Alu 9 59 -61 8 1358 311 118 0 19 chr3 101417675 101417727 -58182056 + B1_Mur2 SINE Alu 42 92 -57 8 1358 989 130 227 5 chr3 101418250 101418435 -58181348 - URR1A DNA MER1_type 0 226 1 8 1358 378 357 8 23 chr3 101419198 101419330 -58180453 + MER5B DNA MER1_type 1 130 -48 8 1358 203 32 65 0 chr3 101420577 101420608 -58179175 + (TTTTA)n Simple_repeat Simple_repeat 3 35 0 8 1358 1152 82 0 0 chr3 101420608 101420755 -58179028 - B1_Mus2 SINE Alu 0 147 1 8 1358 340 302 32 79 chr3 101420791 101420917 -58178866 - PB1D7 SINE Alu 0 120 1 8 1358 192 97 0 0 chr3 101421263 101421294 -58178489 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 8 1358 399 289 43 17 chr3 101421306 101421422 -58178361 + ID_B1 SINE B4 73 191 -33 8 1358 462 213 0 60 chr3 101421324 101421424 -58178359 + PB1D10 SINE Alu 10 103 -14 8 1358 874 221 243 32 chr3 101421841 101422154 -58177629 + MTEa LTR MaLR 1 379 0 8 1358 291 301 41 136 chr3 101422195 101422486 -58177297 - L2b LINE L2 -8 3418 3112 8 1358 803 282 100 32 chr3 101422715 101423026 -58176757 + MER44A DNA MER2_type 1 332 -7 8 1358 266 288 155 21 chr3 101423906 101424215 -58175568 + L1MC LINE L1 4366 4716 -1430 8 1358 362 258 98 16 chr3 101424446 101424568 -58175215 + RMER15 LTR ERVL 374 505 -70 8 1358 1921 185 8 54 chr3 101424642 101425031 -58174752 + ORR1D1 LTR MaLR 2 372 -2 8 1358 245 299 73 61 chr3 101425063 101425309 -58174474 + L1MC LINE L1 4936 5184 -962 8 1358 839 282 96 16 chr3 101425462 101425711 -58174072 + B4 SINE B4 2 270 -22 8 1358 243 88 0 0 chr3 101425711 101425745 -58174038 + (CA)n Simple_repeat Simple_repeat 1 34 0 8 1358 239 296 103 34 chr3 101426178 101426353 -58173430 + L1ME5 LINE L1 5762 5948 -246 8 1358 1111 277 58 25 chr3 101426503 101426866 -58172917 + MTD LTR MaLR 45 419 0 8 1358 913 204 70 15 chr3 101427030 101427229 -58172554 + B3 SINE B2 1 210 -6 8 1358 497 193 127 34 chr3 101427768 101427886 -58171897 + B3A SINE B2 1 129 -69 8 1358 189 368 57 42 chr3 101427887 101428080 -58171703 + L3 LINE CR1 3793 3988 -501 8 1358 590 281 130 20 chr3 101428138 101428338 -58171445 - ID_B1 SINE B4 0 224 3 8 1358 282 241 81 0 chr3 101428370 101428457 -58171326 + L1MC LINE L1 5371 5464 -720 8 1358 958 242 68 20 chr3 101428483 101428732 -58171051 + B4 SINE B4 9 269 -23 8 1358 360 0 0 0 chr3 101428732 101428772 -58171011 + (CA)n Simple_repeat Simple_repeat 2 41 0 8 1358 332 283 152 0 chr3 101428772 101428910 -58170873 + L1MC LINE L1 5490 5648 -536 8 1358 512 242 8 45 chr3 101428980 101429114 -58170669 - MTEa LTR MaLR -12 367 239 8 1358 327 246 0 0 chr3 101429099 101429168 -58170615 + MTEb LTR MaLR 181 249 -130 8 1358 2268 106 44 90 chr3 101429653 101430066 -58169717 - ORR1B1 LTR MaLR 0 394 1 8 1358 246 174 0 0 chr3 101430147 101430193 -58169590 + (TG)n Simple_repeat Simple_repeat 2 47 0 8 1358 621 249 129 137 chr3 101430256 101430759 -58169024 + MLT1D LTR MaLR 3 501 -4 8 1358 643 313 28 25 chr3 101431003 101431293 -58168490 - L1M3 LINE L1 -715 5629 5342 8 1358 1560 241 51 25 chr3 101431303 101431695 -58168088 - MTD LTR MaLR -15 404 3 8 1358 519 231 26 83 chr3 101431743 101431899 -58167884 - B1F1 SINE Alu 0 149 3 8 1358 287 235 44 131 chr3 101431778 101431915 -58167868 - MT2B2 LTR ERVL -308 276 152 8 1358 294 235 78 9 chr3 101431919 101432035 -58167748 - L1M3 LINE L1 -850 5296 5173 8 1358 752 174 72 0 chr3 101432064 101432202 -58167581 + B1_Mur1 SINE Alu 2 149 0 8 1358 931 232 14 14 chr3 101432228 101432442 -58167341 - B3 SINE B2 0 216 3 8 1358 201 74 0 0 chr3 101432518 101432545 -58167238 + (TTTTC)n Simple_repeat Simple_repeat 2 28 0 8 1358 1028 148 142 5 chr3 101432557 101432747 -58167036 - B3 SINE B2 0 216 1 8 1358 295 288 25 131 chr3 101432771 101432787 -58166996 - L1MD LINE L1 -1083 5063 5048 8 1358 243 88 0 0 chr3 101432787 101432821 -58166962 + (CCTG)n Simple_repeat Simple_repeat 2 35 0 8 1358 288 20 61 0 chr3 101432829 101432878 -58166905 + (TCTA)n Simple_repeat Simple_repeat 1 52 0 8 1358 471 300 70 45 chr3 101432878 101433035 -58166748 - RSINE1 SINE B4 -3 162 2 8 1358 581 233 5 137 chr3 101433035 101433225 -58166558 - L1M3 LINE L1 -1112 5034 4873 8 1358 1833 206 11 13 chr3 101433225 101433599 -58166184 - ORR1D1 LTR MaLR -1 373 1 8 1358 581 233 5 137 chr3 101433599 101433627 -58166156 - L1M3 LINE L1 -1274 4872 4845 8 1358 853 188 14 0 chr3 101433627 101433771 -58166012 + B3A SINE B2 3 148 -50 8 1358 621 285 14 7 chr3 101433777 101433922 -58165861 - RSINE1 SINE B4 -17 148 3 8 1358 1045 285 107 35 chr3 101433925 101434558 -58165225 - L1M3 LINE L1 -1777 4363 3685 8 1358 424 290 16 29 chr3 101434688 101434825 -58164958 + MTE2b LTR MaLR 217 351 -28 8 1358 4175 200 38 128 chr3 101434825 101434928 -58164855 - RMER1A Other Other -22 1008 899 8 1358 306 0 0 0 chr3 101434928 101434962 -58164821 + (CA)n Simple_repeat Simple_repeat 2 35 0 8 1358 4175 214 31 106 chr3 101434962 101436303 -58163480 - RMER1A Other Other -132 898 2 8 1358 521 314 115 40 chr3 101437371 101437623 -58162160 + ORSL DNA Tip100 1 271 -4 8 1358 332 329 54 20 chr3 101438489 101438638 -58161145 + MIRb SINE MIR 94 247 -21 8 1358 510 291 48 31 chr3 101438638 101438869 -58160914 + MIR SINE MIR 2 243 -25 8 1358 729 337 129 38 chr3 101439172 101439598 -58160185 - MLT1E3 LTR MaLR -102 522 58 8 1358 315 312 100 14 chr3 101439651 101439791 -58159992 - MLT1A0 LTR MaLR -5 360 209 8 1358 448 236 0 11 chr3 101439805 101439895 -58159888 - MLT1A0 LTR MaLR -260 105 17 8 1358 427 326 161 32 chr3 101440381 101440692 -58159091 - L3 LINE CR1 -800 3689 3339 8 1358 857 245 136 16 chr3 101441318 101441549 -58158234 + B4A SINE B4 1 265 -27 8 1358 198 0 0 0 chr3 101441549 101441571 -58158212 + (CA)n Simple_repeat Simple_repeat 2 23 0 8 1358 857 245 136 16 chr3 101441571 101441596 -58158187 + B4A SINE B4 266 288 -4 8 1358 723 324 126 13 chr3 101441651 101442011 -58157772 + MLT1F1 LTR MaLR 147 563 -6 8 1358 419 289 117 34 chr3 101442838 101443103 -58156680 - L1MDa LINE L1 -4814 1826 1540 8 1358 324 227 183 17 chr3 101443195 101443370 -58156413 - L1MDa LINE L1 -5266 1374 1171 8 1358 792 138 0 0 chr3 101443538 101443668 -58156115 + (TCCC)n Simple_repeat Simple_repeat 1 130 0 8 1358 342 271 23 12 chr3 101443668 101443754 -58156029 - RSINE1 SINE B4 -69 96 10 8 1358 420 55 0 0 chr3 101443847 101443902 -58155881 + (TG)n Simple_repeat Simple_repeat 2 56 0 8 1358 636 265 7 0 chr3 101443917 101444053 -58155730 - RSINE1 SINE B4 -16 149 13 9 1358 21 0 0 0 chr3 101444072 101444093 -58155690 + AT_rich Low_complexity Low_complexity 1 21 0 9 1358 529 346 54 31 chr3 101444108 101444332 -58155451 + MLT1D LTR MaLR 208 436 -69 9 1358 348 224 76 17 chr3 101444342 101444460 -58155323 + PB1 SINE Alu 1 125 -2 9 1358 242 241 111 33 chr3 101444961 101445051 -58154732 - L1MDa LINE L1 -5956 591 495 8 1358 206 256 0 0 chr3 101445114 101445157 -58154626 + GA-rich Low_complexity Low_complexity 2 44 0 9 1358 392 217 340 0 chr3 101445165 101445271 -58154512 + ID_B1 SINE B4 2 143 -81 9 1358 417 361 39 5 chr3 101446327 101446530 -58153253 - LTR16A LTR ERVL -185 266 57 9 1358 187 227 44 22 chr3 101447026 101447071 -58152712 - MER5B DNA MER1_type -39 139 94 9 1358 270 148 36 18 chr3 101447231 101447286 -58152497 + ID SINE ID 2 57 -167 9 1358 2156 203 134 18 chr3 101448301 101448793 -58150990 + RMER15 LTR ERVL 27 575 0 9 1358 1748 210 83 21 chr3 101448969 101449344 -58150439 + MTD LTR MaLR 6 403 -16 9 1358 441 95 0 0 chr3 101449396 101449459 -58150324 + (CA)n Simple_repeat Simple_repeat 2 64 0 9 1359 763 199 13 27 chr3 101450456 101450606 -58149177 - B1_Mus1 SINE Alu 0 148 1 9 1359 21 0 0 0 chr3 101450611 101450632 -58149151 + AT_rich Low_complexity Low_complexity 1 21 0 9 1359 234 279 0 0 chr3 101451169 101451230 -58148553 + G-rich Low_complexity Low_complexity 1 61 0 9 1359 787 190 29 14 chr3 101451684 101451823 -58147960 + B1_Mur2 SINE Alu 9 149 0 9 1359 279 322 0 0 chr3 101451823 101451975 -58147808 + A-rich Low_complexity Low_complexity 1 152 0 9 1359 659 149 8 0 chr3 101451946 101452067 -58147716 + GA-rich Low_complexity Low_complexity 2 123 0 9 1359 843 142 52 0 chr3 101452884 101453018 -58146765 + B1_Mur3 SINE Alu 9 149 0 9 1359 220 373 64 58 chr3 101453914 101453971 -58145812 + L2 LINE L2 2269 2327 -1092 9 1359 503 69 14 0 chr3 101453971 101454043 -58145740 + (TA)n Simple_repeat Simple_repeat 2 74 0 9 1359 220 373 64 58 chr3 101454043 101454156 -58145627 + L2 LINE L2 2328 2440 -979 9 1359 873 129 0 0 chr3 101454162 101454301 -58145482 + (CATATA)n Simple_repeat Simple_repeat 1 139 0 9 1359 872 242 0 6 chr3 101454601 101454767 -58145016 + B3 SINE B2 45 209 -7 9 1359 360 279 83 23 chr3 101454987 101455119 -58144664 + MER5A DNA MER1_type 46 185 -4 9 1359 956 151 114 96 chr3 101455386 101455606 -58144177 + URR1A DNA MER1_type 1 224 -2 9 1359 559 257 7 35 chr3 101455912 101456057 -58143726 + RSINE1 SINE B4 3 143 -22 9 1359 288 0 0 0 chr3 101456075 101456107 -58143676 + (CA)n Simple_repeat Simple_repeat 2 33 0 9 1359 207 69 0 0 chr3 101456107 101456136 -58143647 + (TGAA)n Simple_repeat Simple_repeat 2 30 0 9 1359 235 303 15 0 chr3 101456162 101456228 -58143555 + ID4 SINE ID 3 69 -14 9 1359 786 314 58 43 chr3 101456520 101456916 -58142867 + Charlie4a DNA MER1_type 84 485 -23 9 1359 225 0 0 0 chr3 101456919 101456944 -58142839 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 9 1359 896 108 7 0 chr3 101457849 101457988 -58141795 + (TTCC)n Simple_repeat Simple_repeat 2 141 0 9 1359 309 231 153 47 chr3 101458031 101458181 -58141602 + MIRb SINE MIR 32 197 -71 9 1359 188 359 12 25 chr3 101458411 101458491 -58141292 + L2b LINE L2 3281 3359 -16 9 1359 342 0 0 0 chr3 101458597 101458635 -58141148 + (TA)n Simple_repeat Simple_repeat 1 38 0 9 1359 203 330 28 11 chr3 101458652 101458752 -58141031 - MIR SINE MIR -109 159 61 9 1359 266 184 0 20 chr3 101459348 101459398 -58140385 + B1F1 SINE Alu 5 53 -96 9 1359 357 43 0 0 chr3 101459563 101459610 -58140173 + (TCTG)n Simple_repeat Simple_repeat 2 48 0 9 1359 213 394 11 0 chr3 101460333 101460427 -58139356 + MIRc SINE MIR 122 216 -52 9 1359 557 311 86 19 chr3 101460480 101460749 -58139034 + MamRep434 DNA TcMar 1 287 -139 9 1359 317 246 0 0 chr3 101460815 101460888 -58138895 + ID4_ SINE ID 2 74 -9 9 1359 243 0 0 0 chr3 101460891 101460918 -58138865 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 9 1359 502 217 17 25 chr3 101461285 101461403 -58138380 + PB1D9 SINE Alu 2 118 -2 9 1359 2126 155 17 31 chr3 101461642 101462002 -58137781 + ORR1C1 LTR MaLR 7 361 -17 9 1359 772 257 6 16 chr3 101462093 101462275 -58137508 + B3A SINE B2 1 180 -18 9 1359 1130 117 0 6 chr3 101462663 101462843 -58136940 + (TTC)n Simple_repeat Simple_repeat 2 180 0 9 1359 1189 56 0 0 chr3 101462843 101462986 -58136797 - B1_Mus2 SINE Alu -3 144 2 9 1359 714 76 0 0 chr3 101462986 101463078 -58136705 - 4.5SRNA scRNA scRNA -2 92 1 9 1359 531 299 20 0 chr3 101463108 101463255 -58136528 - RSINE1 SINE B4 -13 152 3 9 1359 479 285 15 101 chr3 101463365 101463564 -58136219 - B3A SINE B2 -16 182 1 9 1359 1061 324 102 72 chr3 101463726 101463779 -58136004 - Arthur1 DNA Tip100 -3198 749 703 9 1359 242 212 242 0 chr3 101463779 101463845 -58135938 + ID2 SINE ID 2 83 0 9 1359 1061 324 102 72 chr3 101463845 101464509 -58135274 - Arthur1 DNA Tip100 -3245 702 11 9 1359 265 295 79 88 chr3 101465052 101465279 -58134504 + MLT1K LTR MaLR 371 595 0 9 1359 198 0 0 0 chr3 101465300 101465322 -58134461 + (GGGAGA)n Simple_repeat Simple_repeat 3 24 0 9 1359 236 332 72 10 chr3 101465433 101465554 -58134229 + MIRb SINE MIR 35 168 -100 9 1359 968 161 169 10 chr3 101465866 101466066 -58133717 + MTC LTR MaLR 2 233 -188 9 1359 446 37 0 0 chr3 101466066 101466120 -58133663 - MTB_Mm LTR MaLR 0 407 354 9 1359 227 347 0 47 chr3 101466118 101466224 -58133559 + MLT1A1 LTR MaLR 62 162 -212 9 1359 272 321 0 0 chr3 101466314 101466398 -58133385 + (TG)n Simple_repeat Simple_repeat 1 84 0 9 1359 823 304 35 35 chr3 101466436 101466722 -58133061 - B4A SINE B4 -6 286 1 9 1359 304 209 15 0 chr3 101466722 101466789 -58132994 + MLT1A1 LTR MaLR 341 408 0 9 1359 711 308 55 25 chr3 101467892 101468092 -58131691 + B4A SINE B4 1 206 -86 9 1359 396 0 0 0 chr3 101468130 101468174 -58131609 + (CA)n Simple_repeat Simple_repeat 2 45 0 9 1359 1135 134 188 47 chr3 101468331 101468565 -58131218 + MT2A LTR ERVL 1 267 -266 9 1359 554 275 8 0 chr3 101468568 101468688 -58131095 - RSINE1 SINE B4 -27 138 18 9 1359 1988 191 12 87 chr3 101468892 101469316 -58130467 - ORR1B1 LTR MaLR -2 392 1 9 1359 212 314 128 0 chr3 101469337 101469423 -58130360 - L2c LINE L2 -9 3378 3282 9 1359 426 237 149 70 chr3 101469435 101469676 -58130107 - Charlie5 DNA MER1_type -16 2608 2349 9 1359 900 173 63 31 chr3 101469947 101470138 -58129645 + B3A SINE B2 2 198 0 9 1359 946 147 14 0 chr3 101470176 101470319 -58129464 - B1_Mur4 SINE Alu 0 150 6 9 1359 29 28 0 0 chr3 101470319 101470355 -58129428 + AT_rich Low_complexity Low_complexity 1 36 0 9 1359 483 261 30 8 chr3 101470436 101470567 -58129216 + ID_B1 SINE B4 91 224 0 9 1359 531 248 305 5 chr3 101472131 101472354 -58127429 + B4A SINE B4 1 290 -2 9 1359 662 198 0 6 chr3 101472358 101472526 -58127257 + (CA)n Simple_repeat Simple_repeat 1 167 0 9 1359 309 26 0 0 chr3 101472790 101472828 -58126955 + (TG)n Simple_repeat Simple_repeat 1 38 0 9 1359 243 291 207 21 chr3 101472835 101473077 -58126706 - L1MA8 LINE L1 -45 6246 5960 9 1359 913 295 80 28 chr3 101473139 101473637 -58126146 - L1MA6 LINE L1 -265 6035 5512 9 1359 400 309 102 93 chr3 101474625 101474968 -58124815 - MLT1M LTR MaLR -161 511 166 9 1359 1491 231 80 12 chr3 101475986 101476324 -58123459 + ORR1D2 LTR MaLR 8 368 -2 9 1359 513 84 0 0 chr3 101476326 101476397 -58123386 + (TA)n Simple_repeat Simple_repeat 2 72 0 9 1359 1439 156 0 18 chr3 101476557 101476786 -58122997 + URR1B DNA MER1_type 1 225 0 9 1359 808 286 51 20 chr3 101476999 101477292 -58122491 + L1M4 LINE L1 2643 2944 -3202 9 1359 817 183 0 15 chr3 101477389 101477522 -58122261 + RSINE1 SINE B4 3 133 -32 9 1359 215 245 0 58 chr3 101477597 101477649 -58122134 + MIR SINE MIR 82 130 -78 9 1359 200 242 172 21 chr3 101478157 101478250 -58121533 + MIRb SINE MIR 44 150 -118 9 1359 711 248 8 0 chr3 101479194 101479327 -58120456 + B3 SINE B2 5 138 -78 9 1359 1115 242 109 57 chr3 101479471 101479821 -58119962 + Lx8 LINE L1 6900 7267 -206 9 1359 2074 101 40 0 chr3 101479850 101480147 -58119636 + ORR1A2 LTR MaLR 11 319 -8 9 1359 386 236 0 33 chr3 101480151 101480243 -58119540 + Lx8 LINE L1 7263 7351 -122 9 1359 1953 181 36 14 chr3 101480253 101480511 -58119272 - MTD LTR MaLR -35 384 115 9 1359 338 0 0 23 chr3 101480511 101480554 -58119229 + (CAAAA)n Simple_repeat Simple_repeat 2 43 0 9 1359 1953 181 36 14 chr3 101480554 101480653 -58119130 - MTD LTR MaLR -305 114 20 9 1359 966 63 0 0 chr3 101480684 101480810 -58118973 + (TTTC)n Simple_repeat Simple_repeat 2 127 0 9 1359 271 278 14 0 chr3 101480810 101480882 -58118901 - ID4 SINE ID -7 76 4 9 1359 390 302 126 12 chr3 101481920 101482175 -58117608 + L1ME3A LINE L1 5566 5849 -324 9 1359 684 266 44 44 chr3 101482542 101482770 -58117013 + MER97c DNA MER1_type? 6 233 -857 9 1359 357 341 63 42 chr3 101482909 101483099 -58116684 - MIRb SINE MIR -71 197 4 9 1359 1924 273 9 20 chr3 101483460 101483968 -58115815 - Lx6 LINE L1 -61 7399 6542 9 1359 978 219 127 56 chr3 101484205 101484654 -58115129 - RMER4B LTR ERVK -9 457 16 9 1359 254 333 34 82 chr3 101486048 101486195 -58113588 + B1F SINE Alu 1 140 -9 9 1359 254 366 0 0 chr3 101486551 101486633 -58113150 + ID4 SINE ID 2 83 0 9 1359 22 0 0 0 chr3 101487148 101487170 -58112613 + GC_rich Low_complexity Low_complexity 1 22 0 9 1359 354 276 87 72 chr3 101488443 101488638 -58111145 + RLTR42-int LTR ERVK 1188 1385 -4137 9 1359 492 18 0 0 chr3 101488963 101489020 -58110763 + (TC)n Simple_repeat Simple_repeat 2 58 0 1 1359 476 272 0 10 chr3 101489116 101489220 -58110563 + PB1D7 SINE Alu 10 112 -8 1 1359 598 304 77 5 chr3 101489753 101489948 -58109835 - MER58A DNA MER1_type 0 224 16 1 1359 184 373 0 85 chr3 101489951 101490033 -58109750 - L2a LINE L2 -49 3377 3303 1 1359 1243 131 67 13 chr3 101490060 101490284 -58109499 + MTC LTR MaLR 1 236 -185 1 1359 1245 170 4 78 chr3 101490442 101490685 -58109098 - URR1B DNA MER1_type 0 225 1 1 1359 316 279 56 28 chr3 101490687 101490794 -58108989 + MIR SINE MIR 41 150 -58 1 1359 183 343 81 57 chr3 101491779 101491989 -58107794 + MIRb SINE MIR 1 215 -53 1 1359 208 156 0 0 chr3 101492264 101492296 -58107487 + (CAGAGA)n Simple_repeat Simple_repeat 4 35 0 1 1359 502 189 0 40 chr3 101492347 101492446 -58107337 + B1F2 SINE Alu 42 136 -13 1 1359 441 181 0 0 chr3 101493077 101493171 -58106612 + (ATGGTG)n Simple_repeat Simple_repeat 5 98 0 1 1359 228 250 0 51 chr3 101493655 101493714 -58106069 + PB1 SINE Alu 71 126 -1 1 1359 901 158 30 80 chr3 101493810 101494010 -58105773 - B2_Mm2 SINE B2 -3 192 3 1 1359 286 261 45 0 chr3 101494538 101494626 -58105157 + GA-rich Low_complexity Low_complexity 4 95 0 1 1359 2620 125 35 5 chr3 101494750 101495153 -58104630 + MTC LTR MaLR 5 419 -2 1 1359 370 319 15 15 chr3 101495298 101495435 -58104348 - L1ME4a LINE L1 -296 5828 5692 1 1359 349 317 0 0 chr3 101495605 101495687 -58104096 + BC1_Mm scRNA scRNA 3 84 -68 1 1359 236 293 40 13 chr3 101495695 101495771 -58104012 - L1ME4a LINE L1 -708 5532 5455 1 1359 251 322 46 53 chr3 101496162 101496313 -58103470 - MIR SINE MIR -71 191 42 1 1359 2140 120 3 61 chr3 101496587 101496933 -58102850 - ORR1A3 LTR MaLR 0 326 1 1 1359 225 259 52 0 chr3 101497274 101497332 -58102451 - YREP_Mm Unknown Unknown -1497 315 255 1 1359 673 230 24 0 chr3 101497282 101497408 -58102375 + ID_B1 SINE B4 94 222 -2 1 1359 914 171 0 26 chr3 101498706 101499489 -58100294 + (TATG)n Simple_repeat Simple_repeat 1 762 0 1 1359 546 231 82 0 chr3 101500599 101500733 -58099050 + B1F SINE Alu 4 148 -1 1 1359 695 250 44 19 chr3 101500850 101501009 -58098774 + B3A SINE B2 18 180 -18 2 1359 831 237 0 70 chr3 101501051 101501264 -58098519 + B3A SINE B2 1 198 0 3 1359 1026 247 42 28 chr3 101501269 101501552 -58098231 + Lx9 LINE L1 7231 7517 -127 4 1359 304 238 50 0 chr3 101501552 101501632 -58098151 - L1MC4a LINE L1 -1204 6678 6595 5 1359 192 330 106 0 chr3 101501786 101501880 -58097903 + MIR SINE MIR 151 254 -8 6 1359 256 366 68 6 chr3 101502220 101502396 -58097387 + MLT1K LTR MaLR 66 252 -343 7 1359 445 236 36 54 chr3 101503237 101503349 -58096434 - PB1D10 SINE Alu 0 117 8 8 1359 208 158 0 26 chr3 101503587 101503626 -58096157 + CT-rich Low_complexity Low_complexity 3 40 0 9 1359 846 220 14 37 chr3 101503636 101503853 -58095930 - B3 SINE B2 -1 215 4 1 1359 189 0 0 0 chr3 101504167 101504188 -58095595 + (CACCC)n Simple_repeat Simple_repeat 5 25 0 1 1359 239 273 15 15 chr3 101505201 101505268 -58094515 - MIRc SINE MIR -118 150 84 1 1359 411 21 0 0 chr3 101506320 101506368 -58093415 + (TG)n Simple_repeat Simple_repeat 2 49 0 1 1359 485 265 76 0 chr3 101506544 101506676 -58093107 + B1F1 SINE Alu 7 148 -1 1 1359 203 338 12 38 chr3 101507425 101507505 -58092278 + L2a LINE L2 3348 3425 -1 1 1359 347 132 26 0 chr3 101508547 101508623 -58091160 + (TCTG)n Simple_repeat Simple_repeat 4 81 0 1 1359 593 139 9 0 chr3 101508647 101508755 -58091028 + (TTCC)n Simple_repeat Simple_repeat 3 111 0 1 1359 444 62 0 0 chr3 101509513 101509577 -58090206 + (TC)n Simple_repeat Simple_repeat 1 64 0 1 1359 519 182 90 10 chr3 101509903 101510003 -58089780 - URR1B DNA MER1_type -117 108 1 1 1359 227 330 32 11 chr3 101510379 101510474 -58089309 + MIRc SINE MIR 46 142 -126 2 1359 236 288 37 152 chr3 101510493 101510710 -58089073 - Charlie12 DNA MER1_type -2431 442 251 2 1359 1112 144 0 6 chr3 101510923 101511091 -58088692 - URR1B DNA MER1_type -43 182 16 2 1359 258 333 11 0 chr3 101511535 101511622 -58088161 - L1MB3 LINE L1 -130 6053 5966 2 1359 446 256 24 0 chr3 101511660 101511803 -58087980 - B1F SINE Alu -16 133 2 2 1359 488 268 31 44 chr3 101511808 101511968 -58087815 - L1MB3 LINE L1 -233 5950 5793 2 1359 360 0 0 0 chr3 101511968 101512008 -58087775 + (TG)n Simple_repeat Simple_repeat 1 40 0 2 1359 195 100 0 0 chr3 101512217 101512247 -58087536 + (GTTTG)n Simple_repeat Simple_repeat 1 30 0 2 1359 234 62 0 0 chr3 101512272 101512304 -58087479 + (TTG)n Simple_repeat Simple_repeat 2 33 0 2 1359 2259 81 32 3 chr3 101512433 101512743 -58087040 - Lx3_Mus LINE L1 -8 7001 6683 2 1359 27 0 0 0 chr3 101513261 101513288 -58086495 + AT_rich Low_complexity Low_complexity 1 27 0 2 1359 623 199 88 62 chr3 101514112 101514305 -58085478 + B3A SINE B2 1 198 0 3 1359 729 228 0 63 chr3 101514347 101514506 -58085277 + B1_Mur1 SINE Alu 1 149 0 3 1359 199 329 37 0 chr3 101515452 101515534 -58084249 - MIRc SINE MIR -146 122 38 3 1359 954 146 29 35 chr3 101516404 101516575 -58083208 + URR1A DNA MER1_type 57 226 0 3 1359 306 98 0 0 chr3 101516792 101516843 -58082940 + (CGTG)n Simple_repeat Simple_repeat 1 51 0 3 1359 285 279 29 9 chr3 101517831 101517936 -58081847 - L1MD LINE L1 -365 5877 5771 3 1359 235 186 126 95 chr3 101517947 101518042 -58081741 - L1M5 LINE L1 -456 5723 5626 3 1359 518 85 43 0 chr3 101518221 101518315 -58081468 + (TG)n Simple_repeat Simple_repeat 1 98 0 3 1359 180 254 16 33 chr3 101518829 101518890 -58080893 + MIRm SINE MIR 13 72 -204 3 1359 329 232 140 18 chr3 101519014 101519128 -58080655 + ID_B1 SINE B4 84 211 -13 3 1359 229 223 165 55 chr3 101519040 101519149 -58080634 + B1_Mm SINE Alu 27 147 0 4 1359 357 24 0 0 chr3 101519187 101519229 -58080554 + (TTCC)n Simple_repeat Simple_repeat 3 44 0 4 1359 685 149 65 24 chr3 101519287 101519411 -58080372 + B2_Mm2 SINE B2 1 129 -66 4 1359 206 196 0 35 chr3 101519658 101519716 -58080067 + CT-rich Low_complexity Low_complexity 1 56 0 4 1359 2243 72 35 65 chr3 101519726 101520065 -58079718 - ORR1A4 LTR MaLR 0 329 1 4 1359 262 267 203 22 chr3 101520085 101520132 -58079651 - RSINE1 SINE B4 0 165 116 4 1359 375 346 6 24 chr3 101520132 101520298 -58079485 - RSINE1 SINE B4 0 165 3 4 1359 262 267 203 22 chr3 101520298 101520388 -58079395 - RSINE1 SINE B4 -50 115 4 4 1359 538 255 154 21 chr3 101520430 101520618 -58079165 - B4A SINE B4 -76 216 4 4 1359 566 216 10 0 chr3 101520628 101520730 -58079053 - PB1D10 SINE Alu -1 116 14 4 1359 228 219 25 76 chr3 101520890 101520969 -58078814 + ID4_ SINE ID 2 76 -7 4 1359 625 226 67 15 chr3 101521004 101521139 -58078644 - ID_B1 SINE B4 0 224 83 5 1359 514 216 39 92 chr3 101521005 101521158 -58078625 - B1F SINE Alu 0 149 5 5 1359 335 221 44 0 chr3 101522022 101522090 -58077693 + Lx8 LINE L1 6928 6998 -475 5 1359 421 230 40 10 chr3 101522090 101522191 -58077592 + MLT1L LTR MaLR 153 256 -354 5 1359 374 294 232 30 chr3 101522258 101522521 -58077262 - ORR1E LTR MaLR 0 359 44 5 1359 252 254 175 52 chr3 101522544 101522698 -58077085 + MLT1L LTR MaLR 383 555 -55 5 1359 21 0 0 0 chr3 101522743 101522764 -58077019 + AT_rich Low_complexity Low_complexity 1 21 0 5 1359 315 71 0 0 chr3 101523195 101523237 -58076546 + (GGA)n Simple_repeat Simple_repeat 1 42 0 5 1359 1326 78 0 0 chr3 101523237 101523417 -58076366 + (GGAGAA)n Simple_repeat Simple_repeat 1 180 0 5 1359 1929 295 40 12 chr3 101524105 101524688 -58075095 - Lx8 LINE L1 -134 7339 6741 5 1359 227 328 0 0 chr3 101524696 101524757 -58075026 - B1F SINE Alu -16 133 73 5 1359 2751 285 77 32 chr3 101525080 101525973 -58073810 + MTE-int LTR MaLR 648 1580 0 6 1359 947 238 41 18 chr3 101526059 101526277 -58073506 + MTEa LTR MaLR 157 379 0 6 1359 312 288 130 56 chr3 101526279 101526617 -58073166 + L1M5 LINE L1 3914 4276 -1870 6 1359 337 311 92 49 chr3 101526637 101526904 -58072879 + L1M5 LINE L1 4304 4587 -1559 6 1359 404 283 116 0 chr3 101526995 101527133 -58072650 - MER5A1 DNA MER1_type -4 162 9 6 1359 417 239 26 76 chr3 101527318 101527622 -58072161 - RMER17D2 LTR ERVK -327 482 194 6 1359 423 329 40 20 chr3 101527503 101527652 -58072131 + MLT1D LTR MaLR 353 504 -1 6 1359 591 180 64 12 chr3 101527954 101528088 -58071695 - B2_Mm2 SINE B2 -4 194 57 6 1359 684 241 24 68 chr3 101528135 101528340 -58071443 - B3A SINE B2 -2 196 1 6 1359 271 293 29 138 chr3 101528346 101528520 -58071263 - B4A SINE B4 -70 222 68 6 1359 299 282 49 2 chr3 101528527 101528651 -58071132 - L1MD LINE L1 -429 5733 5604 6 1359 373 264 90 30 chr3 101528999 101529132 -58070651 + MLT1D LTR MaLR 2 142 -363 7 1359 1747 196 101 3 chr3 101529144 101529522 -58070261 - MTD LTR MaLR 0 419 5 7 1359 457 238 163 23 chr3 101529740 101529869 -58069914 + B1F SINE Alu 1 147 -2 7 1359 478 261 74 7 chr3 101529884 101530019 -58069764 - B1F1 SINE Alu -5 144 1 7 1359 480 221 0 136 chr3 101530536 101530646 -58069137 + PB1D10 SINE Alu 12 106 -11 7 1359 293 0 0 26 chr3 101530646 101530684 -58069099 + (CAAAA)n Simple_repeat Simple_repeat 2 38 0 7 1359 306 73 0 0 chr3 101530691 101530732 -58069051 + (CA)n Simple_repeat Simple_repeat 2 42 0 7 1359 653 291 32 10 chr3 101530880 101531044 -58068739 - B3A SINE B2 -16 182 11 7 1359 1401 209 90 4 chr3 101531087 101531366 -58068417 - Lx5 LINE L1 -112 6938 6636 7 1359 289 87 0 80 chr3 101531363 101531413 -58068370 + L1_Mur2 LINE L1 1844 1889 -3988 7 1359 214 256 0 0 chr3 101531579 101531622 -58068161 + PB1D7 SINE Alu 73 115 -5 8 1359 741 181 22 29 chr3 101532042 101532179 -58067604 + B1_Mus1 SINE Alu 2 137 -11 8 1359 240 35 0 0 chr3 101532179 101532208 -58067575 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 8 1359 501 302 58 0 chr3 101533530 101533669 -58066114 + B3A SINE B2 4 150 -48 8 1359 449 17 17 0 chr3 101533673 101533731 -58066052 + (CA)n Simple_repeat Simple_repeat 1 59 0 8 1359 1087 258 18 51 chr3 101533922 101534196 -58065587 - MTEb LTR MaLR -110 269 5 8 1359 243 203 0 0 chr3 101534348 101534412 -58065371 + GA-rich Low_complexity Low_complexity 1 64 0 8 1359 271 309 83 79 chr3 101534413 101534641 -58065142 + MLT1D LTR MaLR 37 265 -240 8 1359 241 185 56 0 chr3 101534620 101534674 -58065109 + MER33 DNA MER1_type 159 215 -109 8 1359 256 401 36 14 chr3 101535198 101535337 -58064446 + 7SK RNA RNA 31 172 -159 8 1359 198 103 0 0 chr3 101535354 101535383 -58064400 + (TC)n Simple_repeat Simple_repeat 1 29 0 9 1359 517 282 175 4 chr3 101535437 101535570 -58064213 - B4A SINE B4 -3 289 146 9 1359 471 35 0 0 chr3 101535570 101535627 -58064156 + (TG)n Simple_repeat Simple_repeat 2 58 0 9 1359 517 282 175 4 chr3 101535627 101535739 -58064044 - B4A SINE B4 -147 145 4 9 1359 542 310 179 61 chr3 101535842 101536282 -58063501 - MLT1K LTR MaLR -4 591 100 9 1359 405 0 0 0 chr3 101536542 101536587 -58063196 + (TAAA)n Simple_repeat Simple_repeat 4 48 0 9 1359 301 291 118 0 chr3 101536745 101536855 -58062928 + B1F2 SINE Alu 2 124 -25 9 1359 835 227 6 0 chr3 101536907 101537073 -58062710 - Lx5 LINE L1 -673 6377 6184 9 1359 250 330 147 0 chr3 101537073 101537263 -58062520 - MLT1J LTR MaLR -33 479 204 9 1359 1232 252 266 8 chr3 101537313 101537934 -58061849 + Lx6 LINE L1 6653 7434 -26 9 1359 783 164 50 0 chr3 101537969 101538109 -58061674 + B1_Mur2 SINE Alu 3 149 0 9 1359 308 306 129 0 chr3 101538176 101538300 -58061483 - MLT1J LTR MaLR -368 144 5 9 1359 250 310 169 64 chr3 101538987 101539283 -58060500 + MamRep434 DNA TcMar 11 337 -89 1 1359 207 242 45 15 chr3 101539649 101539716 -58060067 - MIRb SINE MIR -164 104 36 1 1359 573 15 0 0 chr3 101539776 101539842 -58059941 + (TCTA)n Simple_repeat Simple_repeat 4 69 0 1 1359 222 305 17 17 chr3 101539857 101539917 -58059866 - ID SINE ID -157 67 8 1 1359 751 264 41 5 chr3 101539941 101540135 -58059648 - B3 SINE B2 -14 202 2 1 1359 549 0 0 0 chr3 101540163 101540224 -58059559 + (TA)n Simple_repeat Simple_repeat 2 62 0 1 1359 1987 160 66 14 chr3 101540273 101540622 -58059161 - ORR1B2 LTR MaLR 0 367 1 1 1359 306 0 0 0 chr3 101540762 101540796 -58058987 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 1 1359 514 107 0 0 chr3 101541118 101541193 -58058590 - ORR1C2 LTR MaLR 0 384 310 1 1359 1066 145 1 33 chr3 101541192 101541406 -58058377 - ORR1B2-int LTR MaLR -34 1546 1323 1 1359 1790 82 92 101 chr3 101541406 101541774 -58058009 - RLTR10B2 LTR ERVK 0 365 1 1 1359 4864 219 82 14 chr3 101541774 101542890 -58056893 - ORR1B2-int LTR MaLR -178 1192 1 1 1359 1676 182 57 57 chr3 101542890 101543090 -58056693 - ORR1B2 LTR MaLR 0 384 180 1 1359 1135 100 0 16 chr3 101543090 101543273 -58056510 + (GGGAGA)n Simple_repeat Simple_repeat 1 180 0 1 1359 1676 182 57 57 chr3 101543273 101543456 -58056327 - ORR1B2 LTR MaLR -205 179 1 1 1359 225 314 126 42 chr3 101543797 101543940 -58055843 + MLT2B3 LTR ERVL 1 155 -399 1 1359 367 326 91 120 chr3 101543948 101544223 -58055560 + ORR1E LTR MaLR 80 346 -13 1 1359 364 331 75 13 chr3 101544876 101545035 -58054748 - L3 LINE CR1 -356 4133 3965 1 1359 590 244 16 8 chr3 101545246 101545374 -58054409 + MTD LTR MaLR 276 404 -15 1 1359 240 265 0 105 chr3 101545359 101545435 -58054348 + PB1D10 SINE Alu 45 112 -5 1 1359 1076 128 0 6 chr3 101545436 101545616 -58054167 + (GAAA)n Simple_repeat Simple_repeat 1 179 0 1 1359 417 179 0 0 chr3 101545633 101545717 -58054066 + GA-rich Low_complexity Low_complexity 3 86 0 1 1359 2451 81 16 0 chr3 101546032 101546354 -58053429 + ORR1A2 LTR MaLR 1 327 0 1 1359 328 20 0 39 chr3 101546916 101546967 -58052816 + (TTTTG)n Simple_repeat Simple_repeat 2 50 0 1 1359 791 161 39 0 chr3 101546975 101547105 -58052678 - B1_Mur2 SINE Alu -14 135 1 1 1359 349 276 40 58 chr3 101547251 101547424 -58052359 + L1M1 LINE L1 5340 5509 -794 1 1359 320 273 0 38 chr3 101547876 101547956 -58051827 - MTEa LTR MaLR -300 79 3 1 1359 826 174 78 0 chr3 101548761 101548928 -58050855 + B3A SINE B2 4 183 -15 1 1359 21 71 0 0 chr3 101548959 101549001 -58050782 + AT_rich Low_complexity Low_complexity 1 42 0 1 1359 953 197 33 19 chr3 101549001 101549213 -58050570 - B3 SINE B2 -1 215 1 1 1359 221 240 0 13 chr3 101549317 101549393 -58050390 + CT-rich Low_complexity Low_complexity 1 75 0 1 1359 249 306 94 0 chr3 101549998 101550083 -58049700 - MER2 DNA MER2_type -3 342 250 1 1359 717 224 83 18 chr3 101550097 101550252 -58049531 + B3A SINE B2 14 176 -22 1 1359 501 17 0 0 chr3 101550252 101550310 -58049473 + (CA)n Simple_repeat Simple_repeat 1 58 0 1 1359 717 224 83 18 chr3 101550310 101550322 -58049461 + B3A SINE B2 177 191 -7 1 1359 624 219 39 124 chr3 101550347 101550581 -58049202 + B3 SINE B2 3 216 0 1 1359 626 259 67 40 chr3 101550584 101550741 -58049042 - MER2 DNA MER2_type -80 265 110 1 1359 333 0 0 0 chr3 101550741 101550778 -58049005 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 1359 626 259 67 40 chr3 101550778 101550845 -58048938 - MER2 DNA MER2_type -236 109 35 1 1359 1110 124 6 17 chr3 101550853 101551025 -58048758 + B2_Mm2 SINE B2 2 171 -24 1 1359 376 51 0 33 chr3 101551034 101551095 -58048688 + (TA)n Simple_repeat Simple_repeat 1 59 0 1 1359 529 224 53 7 chr3 101551134 101551294 -58048489 - MLT1A LTR MaLR -33 341 155 1 1359 28 29 0 0 chr3 101551549 101551584 -58048199 + AT_rich Low_complexity Low_complexity 1 35 0 1 1359 201 203 98 33 chr3 101551942 101552003 -58047780 - MIRm SINE MIR -54 222 158 1 1359 219 225 208 9 chr3 101552680 101552796 -58046987 + MIRb SINE MIR 92 234 -34 1 1359 1436 192 123 18 chr3 101552842 101553182 -58046601 - MTEb LTR MaLR 0 379 4 1 1359 747 87 0 0 chr3 101553576 101553680 -58046103 + (GA)n Simple_repeat Simple_repeat 1 104 0 1 1359 333 0 0 0 chr3 101554324 101554361 -58045422 + (TG)n Simple_repeat Simple_repeat 2 38 0 1 1359 1100 174 78 10 chr3 101554413 101554806 -58044977 - MT2A LTR ERVL -69 464 3 1 1359 338 254 210 72 chr3 101555159 101555435 -58044348 - L1ME3 LINE L1 -270 5892 5579 1 1359 245 311 123 70 chr3 101555500 101555784 -58043999 + MamRep434 DNA TcMar 126 424 -2 1 1359 198 0 0 0 chr3 101556139 101556161 -58043622 + (A)n Simple_repeat Simple_repeat 1 22 0 1 1359 650 214 130 45 chr3 101556434 101556638 -58043145 - B3A SINE B2 0 216 1 1 1359 2829 81 20 15 chr3 101556810 101557201 -58042582 - L1Md_F2 LINE L1 0 6582 6190 1 1359 309 188 87 0 chr3 101557201 101557259 -58042524 - ORR1D1 LTR MaLR -10 384 321 1 1359 251 211 26 13 chr3 101557297 101557374 -58042409 + A-rich Low_complexity Low_complexity 6 83 0 1 1359 1403 165 21 153 chr3 101557380 101557752 -58042031 - ORR1D1 LTR MaLR -51 323 1 1 1359 8373 35 1 1 chr3 101558153 101559254 -58040529 - L1Md_F2 LINE L1 -2 6580 5480 1 1359 369 314 90 81 chr3 101559256 101559766 -58040017 - HAL1 LINE L1 -845 1662 1133 1 1359 647 250 19 19 chr3 101559766 101559921 -58039862 - RSINE1 SINE B4 -8 157 3 1 1359 369 314 90 81 chr3 101559921 101560055 -58039728 - HAL1 LINE L1 -1375 1132 1012 1 1359 3088 20 0 20 chr3 101560272 101560625 -58039158 + ORR1A0 LTR MaLR 1 346 0 1 1359 1828 220 44 37 chr3 101561291 101561368 -58038415 - MTD LTR MaLR -8 411 343 1 1359 947 99 46 0 chr3 101561368 101561499 -58038284 + B1_Mus1 SINE Alu 2 138 -10 1 1359 576 0 0 0 chr3 101561499 101561563 -58038220 + (CAAAA)n Simple_repeat Simple_repeat 2 65 0 1 1359 1828 220 44 37 chr3 101561563 101561890 -58037893 - MTD LTR MaLR -77 342 4 1 1359 450 336 0 8 chr3 101562421 101562547 -58037236 - RSINE1 SINE B4 -2 163 39 1 1359 218 289 48 0 chr3 101562820 101562903 -58036880 + MIRc SINE MIR 110 196 -72 1 1359 408 344 68 23 chr3 101563217 101563437 -58036346 + MIRb SINE MIR 5 234 -34 1 1359 416 236 92 98 chr3 101563696 101563870 -58035913 + B4A SINE B4 3 175 -117 1 1359 468 111 0 0 chr3 101563976 101564048 -58035735 + (CATA)n Simple_repeat Simple_repeat 4 75 0 1 1359 229 304 50 77 chr3 101564428 101564610 -58035173 - RMER1C Other Other -62 1280 1104 1 1359 992 255 103 18 chr3 101564499 101564771 -58035012 - Lx8 LINE L1 -139 7334 7040 1 1359 1459 163 40 8 chr3 101564957 101565205 -58034578 + RMER13A LTR ERVK 1 256 -604 1 1359 1223 254 90 20 chr3 101565272 101565617 -58034166 - MTD LTR MaLR -50 369 1 1 1359 526 371 56 18 chr3 101567151 101567436 -58032347 + MLT1L LTR MaLR 110 405 -205 1 1359 546 227 25 8 chr3 101567631 101567751 -58032032 - B1_Mur3 SINE Alu -26 123 2 1 1359 970 214 48 14 chr3 101567893 101568102 -58031681 - B3 SINE B2 0 216 1 1 1359 350 306 18 9 chr3 101568382 101568491 -58031292 + PB1D10 SINE Alu 5 114 -3 1 1359 180 77 0 0 chr3 101568647 101568673 -58031110 + (TTAA)n Simple_repeat Simple_repeat 1 26 0 1 1359 390 232 77 48 chr3 101568673 101568777 -58031006 - PB1D9 SINE Alu -9 111 5 1 1359 2100 170 31 0 chr3 101569093 101569446 -58030337 - ORR1B2 LTR MaLR 0 367 4 1 1359 215 421 23 16 chr3 101569580 101569708 -58030075 - MIR SINE MIR -21 241 113 1 1359 710 220 160 11 chr3 101569883 101570071 -58029712 - B3 SINE B2 0 216 1 1 1359 315 302 17 0 chr3 101570090 101570199 -58029584 - PB1D7 SINE Alu -1 119 7 1 1359 423 0 0 0 chr3 101571144 101571191 -58028592 + (TG)n Simple_repeat Simple_repeat 1 47 0 1 1359 346 235 15 0 chr3 101571443 101571511 -58028272 + ID4_ SINE ID 6 74 -9 1 1359 332 247 25 38 chr3 101571511 101571523 -58028260 + ID SINE ID 6 84 -140 1 1359 805 260 34 24 chr3 101571650 101571855 -58027928 - B3 SINE B2 -8 208 2 1 1359 2772 163 1 128 chr3 101572198 101572897 -58026886 + RMER6C LTR ERVK 1 689 -1 1 1359 970 260 38 19 chr3 101573001 101573213 -58026570 + B4A SINE B4 67 282 -10 1 1359 343 318 98 34 chr3 101573433 101573638 -58026145 + L2c LINE L2 2558 2775 -644 1 1359 372 43 0 0 chr3 101573886 101573932 -58025851 + (TC)n Simple_repeat Simple_repeat 2 47 0 1 1359 795 174 163 61 chr3 101573937 101574133 -58025650 - B3 SINE B2 0 216 1 1 1359 207 300 178 39 chr3 101574179 101574387 -58025396 + L2c LINE L2 3149 3385 -2 1 1359 982 282 111 19 chr3 101574793 101575154 -58024629 - Lx8 LINE L1 -9 7464 7071 1 1359 240 143 0 0 chr3 101575414 101575456 -58024327 + (TAA)n Simple_repeat Simple_repeat 2 43 0 1 1359 655 261 0 7 chr3 101575848 101575991 -58023792 + B1F SINE Alu 1 142 -7 1 1359 3315 59 9 24 chr3 101575991 101576115 -58023668 - L1_Mm LINE L1 -307 5576 5458 1 1359 1338 73 0 0 chr3 101576115 101576294 -58023489 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 1 1359 1218 35 7 0 chr3 101576294 101576437 -58023346 - B1_Mus2 SINE Alu -3 144 1 1 1359 3315 59 9 24 chr3 101576437 101576762 -58023021 - L1_Mm LINE L1 -426 5457 5134 1 1359 3784 53 0 2 chr3 101576765 101577222 -58022561 + L1_Mus2 LINE L1 6111 6566 0 1 1359 436 254 119 0 chr3 101577586 101577704 -58022079 - RSINE1 SINE B4 -33 132 1 1 1359 4793 66 22 8 chr3 101577756 101578385 -58021398 - L1Md_F2 LINE L1 -12 6570 5933 1 1359 3261 46 18 0 chr3 101578386 101578777 -58021006 - MTB LTR MaLR 0 400 3 1 1359 841 44 18 0 chr3 101578777 101578891 -58020892 + (TCTA)n Simple_repeat Simple_repeat 2 117 0 1 1359 251 230 18 0 chr3 101579192 101579255 -58020528 - L1M3 LINE L1 -1366 4774 4717 1 1359 1782 182 90 78 chr3 101579595 101579994 -58019789 + MTD LTR MaLR 1 404 -15 1 1359 504 0 0 0 chr3 101580184 101580240 -58019543 + (TC)n Simple_repeat Simple_repeat 1 56 0 1 1359 378 0 0 0 chr3 101580240 101580282 -58019501 + (TG)n Simple_repeat Simple_repeat 2 43 0 1 1359 707 153 63 0 chr3 101580285 101580396 -58019387 - B1_Mur1 SINE Alu -8 141 24 1 1359 289 254 176 4 chr3 101580404 101580503 -58019280 - PB1D7 SINE Alu -2 118 1 2 1360 944 257 14 65 chr3 101581401 101581511 -58018272 + B4A SINE B4 1 107 -185 2 1360 828 237 60 10 chr3 101581511 101581711 -58018072 - B3 SINE B2 -4 212 3 2 1360 944 257 14 65 chr3 101581711 101581891 -58017892 + B4A SINE B4 108 276 -16 2 1360 205 224 20 0 chr3 101581921 101581970 -58017813 + (CATATA)n Simple_repeat Simple_repeat 4 53 0 2 1360 521 261 82 0 chr3 101582011 101582145 -58017638 - B1_Mur1 SINE Alu -3 146 2 2 1360 290 312 0 0 chr3 101582302 101582382 -58017401 - ID4 SINE ID 0 83 4 2 1360 531 208 0 10 chr3 101582384 101582481 -58017302 - PB1D10 SINE Alu -2 115 20 2 1360 1406 235 47 8 chr3 101582481 101582846 -58016937 - MTEb LTR MaLR 0 379 1 2 1360 1149 241 21 31 chr3 101582863 101583150 -58016633 - ORR1D2 LTR MaLR -86 284 1 2 1360 230 286 131 0 chr3 101584425 101584509 -58015274 - MER45A DNA Tip100 -32 146 52 2 1360 467 168 11 0 chr3 101585632 101585727 -58014056 + GA-rich Low_complexity Low_complexity 2 97 0 2 1360 833 299 9 0 chr3 101586246 101586463 -58013320 + ID_B1 SINE B4 4 222 -2 2 1360 302 239 45 96 chr3 101586516 101586673 -58013110 + L1MA9 LINE L1 5955 6103 -209 2 1360 317 313 3 0 chr3 101586717 101586815 -58012968 + B1F SINE Alu 49 147 -2 2 1360 446 237 10 4 chr3 101587392 101587498 -58012285 + B3A SINE B2 95 203 -13 2 1360 360 0 0 0 chr3 101587554 101587594 -58012189 + (CA)n Simple_repeat Simple_repeat 1 40 0 2 1360 802 260 243 0 chr3 101589379 101589683 -58010100 - MTEa LTR MaLR 0 379 2 2 1360 1637 203 93 19 chr3 101589758 101590135 -58009648 - MTD LTR MaLR -11 408 4 2 1360 1412 260 81 40 chr3 101590429 101590854 -58008929 + RMER5 LTR ERV1 43 492 -42 2 1360 5065 103 58 91 chr3 101590854 101591791 -58007992 + RMER17A2 LTR ERVK 1 906 0 2 1360 1412 260 81 40 chr3 101591791 101591834 -58007949 + RMER5 LTR ERV1 493 530 -4 2 1360 446 61 15 0 chr3 101592077 101592143 -58007640 + (TAGA)n Simple_repeat Simple_repeat 3 69 0 2 1360 381 279 48 0 chr3 101592156 101592260 -58007523 - PB1D7 SINE Alu -9 111 3 2 1360 441 374 16 11 chr3 101592490 101592674 -58007109 - MER5A DNA MER1_type -1 188 4 2 1360 331 283 311 16 chr3 101592725 101593163 -58006620 + L2 LINE L2 1452 2018 -1401 2 1360 241 277 31 0 chr3 101593199 101593264 -58006519 - RMER5 LTR ERV1 -356 178 112 2 1360 627 275 105 86 chr3 101593325 101593559 -58006224 + L2 LINE L2 2259 2499 -920 2 1360 387 0 0 0 chr3 101593559 101593602 -58006181 + (CA)n Simple_repeat Simple_repeat 2 44 0 2 1360 627 275 105 86 chr3 101593602 101593776 -58006007 + L2 LINE L2 2500 2675 -744 2 1360 1228 238 45 16 chr3 101595895 101596203 -58003580 - Lx8 LINE L1 -313 7160 6844 2 1360 442 238 120 104 chr3 101596469 101596550 -58003233 - MER5A DNA MER1_type 0 189 125 2 1360 2730 138 138 19 chr3 101596550 101597073 -58002710 + RMER4B LTR ERVK 1 585 0 2 1360 442 238 120 104 chr3 101597073 101597174 -58002609 - MER5A DNA MER1_type -65 124 4 2 1360 970 305 66 38 chr3 101597308 101597655 -58002128 + MLT1H1 LTR MaLR 198 554 -1 2 1360 192 273 90 15 chr3 101598793 101598860 -58000923 + MIR SINE MIR 35 106 -156 2 1360 572 290 71 14 chr3 101599056 101599266 -58000517 + B4A SINE B4 7 228 -64 2 1360 377 239 53 55 chr3 101601833 101601987 -57997796 + MTD LTR MaLR 134 295 -112 2 1360 562 206 30 42 chr3 101601976 101602139 -57997644 + MTD LTR MaLR 210 397 -22 2 1360 231 327 53 47 chr3 101603188 101603358 -57996425 + MIRb SINE MIR 67 237 -31 2 1360 261 0 0 0 chr3 101604209 101604238 -57995545 + (A)n Simple_repeat Simple_repeat 1 29 0 2 1360 209 149 43 0 chr3 101604537 101604584 -57995199 + G-rich Low_complexity Low_complexity 3 51 0 2 1360 180 0 0 0 chr3 101604969 101604989 -57994794 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 2 1360 225 182 0 22 chr3 101605049 101605094 -57994689 + G-rich Low_complexity Low_complexity 5 48 0 2 1360 455 309 41 45 chr3 101605313 101605531 -57994252 - MTE2a LTR MaLR -199 220 8 2 1360 514 232 91 63 chr3 101605553 101605730 -57994053 + MTE2a LTR MaLR 226 379 0 2 1360 501 310 6 25 chr3 101606887 101607049 -57992734 + RSINE1 SINE B4 1 159 -6 2 1360 214 200 18 0 chr3 101607056 101607111 -57992672 + T-rich Low_complexity Low_complexity 6 61 0 2 1360 1291 14 7 0 chr3 101607111 101607258 -57992525 - B1_Mus1 SINE Alu 0 148 1 2 1360 908 256 148 21 chr3 101607331 101607662 -57992121 - MTEa LTR MaLR -6 373 1 2 1360 281 329 60 27 chr3 101607831 101607981 -57991802 + L2a LINE L2 3271 3425 -1 2 1360 351 0 0 0 chr3 101608181 101608220 -57991563 + (TG)n Simple_repeat Simple_repeat 2 40 0 2 1360 535 231 0 9 chr3 101608753 101608858 -57990925 - B1_Mur4 SINE Alu -46 104 1 2 1360 254 299 57 99 chr3 101608858 101608916 -57990867 - B4A SINE B4 -208 84 33 2 1360 216 0 0 0 chr3 101609859 101609883 -57989900 + (T)n Simple_repeat Simple_repeat 1 24 0 2 1360 207 231 77 0 chr3 101609915 101609967 -57989816 + MIRc SINE MIR 151 206 -62 2 1360 345 47 0 0 chr3 101611461 101611504 -57988279 + (TCCA)n Simple_repeat Simple_repeat 1 43 0 2 1360 297 299 169 30 chr3 101611510 101612066 -57987717 - L2a LINE L2 -7 3419 2685 2 1360 499 364 74 45 chr3 101612535 101612938 -57986845 + L1MEd LINE L1 442 856 -5280 2 1360 1053 165 155 0 chr3 101612984 101613178 -57986605 + URR1A DNA MER1_type 3 226 0 2 1360 278 280 0 29 chr3 101613270 101613373 -57986410 + L1MEd LINE L1 1013 1112 -5130 2 1360 226 239 217 13 chr3 101613587 101613744 -57986039 + L1MEd LINE L1 1384 1572 -4594 2 1360 303 330 131 82 chr3 101613815 101614141 -57985642 + L1MEd LINE L1 1692 2030 -4136 2 1360 336 48 0 0 chr3 101614141 101614183 -57985600 + (GGGGA)n Simple_repeat Simple_repeat 3 44 0 2 1360 303 330 131 82 chr3 101614183 101614246 -57985537 + L1MEd LINE L1 2031 2099 -4067 2 1360 242 321 104 14 chr3 101614497 101614709 -57985074 + L1MEd LINE L1 2427 2657 -3489 2 1360 1756 172 46 43 chr3 101614858 101615228 -57984555 - ORR1D1 LTR MaLR -3 371 1 2 1360 485 250 113 74 chr3 101615754 101615983 -57983800 - MLT1B LTR MaLR -59 331 94 2 1360 491 247 21 66 chr3 101616226 101616380 -57983403 + B3A SINE B2 48 183 -15 2 1360 503 265 0 17 chr3 101617098 101617217 -57982566 + B1F SINE Alu 1 117 -32 2 1360 289 217 0 0 chr3 101617475 101617535 -57982248 + RMER15 LTR ERVL 408 467 -108 2 1360 26 50 0 0 chr3 101617606 101617646 -57982137 + AT_rich Low_complexity Low_complexity 1 40 0 2 1360 556 148 50 42 chr3 101620394 101620514 -57979269 - B1F2 SINE Alu -13 136 16 2 1360 438 275 84 45 chr3 101620599 101620913 -57978870 + L1MA5 LINE L1 5734 6040 -260 2 1360 221 236 36 0 chr3 101620915 101620970 -57978813 + (GGGTG)n Simple_repeat Simple_repeat 4 60 0 2 1360 1960 88 110 0 chr3 101621140 101621458 -57978325 + BGLII_Mus LTR ERVK 70 422 0 2 1360 832 276 170 19 chr3 101621544 101622020 -57977763 + L1MA5 LINE L1 5478 6025 -275 2 1360 677 227 4 14 chr3 101622828 101622998 -57976785 + L1MA5A LINE L1 5771 5939 -358 2 1360 228 225 0 0 chr3 101623685 101623725 -57976058 + (TG)n Simple_repeat Simple_repeat 2 41 0 2 1360 258 219 78 0 chr3 101623762 101623826 -57975957 - ID4_ SINE ID -11 72 4 2 1360 788 196 133 21 chr3 101624345 101624533 -57975250 - B3 SINE B2 -7 209 1 2 1360 1136 73 0 0 chr3 101624615 101624751 -57975032 + B1_Mm SINE Alu 4 139 -8 2 1360 276 53 0 0 chr3 101624751 101624789 -57974994 + (CCAA)n Simple_repeat Simple_repeat 2 39 0 2 1360 456 132 0 0 chr3 101625098 101625105 -57974678 + (TTCC)n Simple_repeat Simple_repeat 1 7 0 2 1360 1068 107 6 17 chr3 101625105 101625286 -57974497 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 2 1360 456 132 0 0 chr3 101625286 101625354 -57974429 + (TTCC)n Simple_repeat Simple_repeat 1 68 0 2 1360 537 238 151 27 chr3 101625355 101625541 -57974242 - ID_B1 SINE B4 -15 209 1 2 1360 703 198 115 28 chr3 101626090 101626272 -57973511 - B3A SINE B2 0 198 1 2 1360 578 229 0 33 chr3 101626277 101626399 -57973384 - PB1D7 SINE Alu -1 119 2 2 1360 477 0 0 0 chr3 101626519 101626572 -57973211 + (TC)n Simple_repeat Simple_repeat 2 54 0 2 1360 303 28 0 0 chr3 101626572 101626607 -57973176 + (TG)n Simple_repeat Simple_repeat 1 36 0 2 1360 230 156 0 0 chr3 101627613 101627658 -57972125 + T-rich Low_complexity Low_complexity 1 45 0 2 1360 545 257 109 78 chr3 101628620 101628903 -57970880 + B4A SINE B4 1 292 0 2 1360 261 0 0 0 chr3 101629052 101629081 -57970702 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2 1360 710 246 200 55 chr3 101629147 101629422 -57970361 + ORR1D2 LTR MaLR 48 362 -8 2 1360 428 160 27 0 chr3 101629507 101629582 -57970201 - ID SINE ID -147 77 1 2 1360 567 270 0 0 chr3 101631129 101631244 -57968539 + ID_B1 SINE B4 89 203 -21 2 1360 606 277 14 28 chr3 101632247 101632392 -57967391 + ID_B1 SINE B4 1 143 -81 2 1360 186 43 0 0 chr3 101633324 101633347 -57966436 + (CA)n Simple_repeat Simple_repeat 2 24 0 2 1360 1022 220 110 34 chr3 101633384 101633676 -57966107 - MTD LTR MaLR -73 346 33 2 1360 295 171 141 35 chr3 101633694 101633779 -57966004 + PB1D9 SINE Alu 27 120 0 2 1360 438 20 0 0 chr3 101635379 101635430 -57964353 + (TCCC)n Simple_repeat Simple_repeat 2 52 0 2 1360 189 303 60 15 chr3 101635794 101635861 -57963922 - L2b LINE L2 -77 3298 3229 2 1360 243 0 0 0 chr3 101635949 101635976 -57963807 + (CAG)n Simple_repeat Simple_repeat 2 28 0 2 1360 292 191 191 0 chr3 101636047 101636115 -57963668 - MIRc SINE MIR -118 150 70 2 1360 310 217 57 14 chr3 101636624 101636694 -57963089 + MIR SINE MIR 81 153 -55 2 1360 207 0 0 0 chr3 101636741 101636764 -57963019 + (TA)n Simple_repeat Simple_repeat 2 24 0 2 1360 333 349 63 45 chr3 101637221 101637443 -57962340 - MER102b DNA MER1_type -115 226 1 2 1360 786 99 0 22 chr3 101637926 101638060 -57961723 + (TTCC)n Simple_repeat Simple_repeat 4 134 0 2 1360 656 236 0 27 chr3 101638076 101638224 -57961559 - B1_Mur1 SINE Alu -5 144 1 2 1360 1350 178 9 0 chr3 101638252 101638466 -57961317 - B3 SINE B2 0 216 1 3 1360 259 160 0 62 chr3 101638530 101638610 -57961173 + T-rich Low_complexity Low_complexity 1 75 0 3 1360 192 97 0 0 chr3 101639536 101639567 -57960216 + (CA)n Simple_repeat Simple_repeat 1 31 0 3 1360 288 0 0 0 chr3 101639704 101639736 -57960047 + (CA)n Simple_repeat Simple_repeat 1 32 0 3 1360 405 0 0 0 chr3 101639736 101639780 -57960003 + (GA)n Simple_repeat Simple_repeat 2 46 0 3 1360 414 255 0 97 chr3 101641337 101641450 -57958333 + RSINE1 SINE B4 4 105 -60 3 1360 576 294 98 98 chr3 101641570 101641638 -57958145 - B4A SINE B4 -8 284 242 3 1360 1773 10 0 0 chr3 101641638 101641831 -57957952 - B2_Mm1a SINE B2 0 193 1 3 1360 576 294 98 98 chr3 101641831 101642037 -57957746 - B4A SINE B4 -51 241 10 3 1360 1399 146 119 21 chr3 101642085 101642382 -57957401 + RMER6A LTR ERVK 466 756 0 3 1360 1090 256 49 4 chr3 101642666 101642933 -57956850 + B4 SINE B4 2 280 -12 3 1360 477 0 0 0 chr3 101642936 101642989 -57956794 + (CA)n Simple_repeat Simple_repeat 2 54 0 3 1360 561 281 16 73 chr3 101643319 101643511 -57956272 + B3A SINE B2 4 184 -14 3 1360 295 293 32 16 chr3 101644342 101644467 -57955316 + L1M4 LINE L1 4995 5121 -1025 3 1360 243 226 0 101 chr3 101644749 101644818 -57954965 - ID4_ SINE ID -20 63 2 3 1360 1344 62 16 38 chr3 101645490 101645659 -57954124 + B2_Mm2 SINE B2 1 169 -26 3 1360 348 24 0 0 chr3 101645659 101645700 -57954083 + (TA)n Simple_repeat Simple_repeat 1 41 0 3 1360 1344 62 16 38 chr3 101645700 101645715 -57954068 + B2_Mm2 SINE B2 170 181 -14 3 1360 474 343 37 74 chr3 101646223 101646519 -57953264 - LTR89 LTR ERVL? -44 835 551 3 1360 25 31 0 0 chr3 101647964 101647996 -57951787 + AT_rich Low_complexity Low_complexity 1 32 0 3 1360 533 111 0 0 chr3 101648004 101648076 -57951707 - ID4 SINE ID -10 73 2 3 1360 1108 287 62 38 chr3 101648542 101648995 -57950788 + Lx9 LINE L1 7002 7465 -179 3 1360 23 0 0 0 chr3 101649106 101649129 -57950654 + AT_rich Low_complexity Low_complexity 1 23 0 3 1360 663 308 113 14 chr3 101649164 101649457 -57950326 + L1M4 LINE L1 434 755 -5787 3 1360 3375 40 2 0 chr3 101650657 101651054 -57948729 + MTB LTR MaLR 1 398 -2 3 1360 391 172 35 147 chr3 101651258 101651374 -57948409 + MT2B LTR ERVL 153 255 -346 3 1360 904 155 0 0 chr3 101651271 101651419 -57948364 + B1_Mur4 SINE Alu 1 148 -2 3 1360 365 271 25 111 chr3 101651992 101652051 -57947732 - B1F1 SINE Alu -1 148 106 3 1360 1244 131 121 0 chr3 101652051 101652249 -57947534 + URR1A DNA MER1_type 5 226 0 3 1360 365 271 25 111 chr3 101652249 101652351 -57947432 - B1F1 SINE Alu -44 105 1 3 1360 1389 78 0 0 chr3 101652518 101652786 -57946997 + (CA)n Simple_repeat Simple_repeat 1 268 0 3 1360 183 42 0 0 chr3 101652870 101652894 -57946889 + (TG)n Simple_repeat Simple_repeat 2 25 0 3 1360 240 266 0 30 chr3 101653182 101653248 -57946535 - tRNA-Ala-GCY_ tRNA tRNA -9 66 3 3 1360 230 372 12 0 chr3 101653255 101653341 -57946442 - PB1 SINE Alu -23 104 18 3 1360 466 160 0 0 chr3 101653406 101653481 -57946302 + B1_Mus1 SINE Alu 3 77 -71 3 1360 295 241 64 136 chr3 101653481 101653531 -57946252 + MT2B LTR ERVL 167 282 -319 3 1360 1263 99 21 27 chr3 101653931 101654117 -57945666 + B2_Mm2 SINE B2 3 187 -8 3 1360 198 0 0 0 chr3 101655651 101655673 -57944110 + (T)n Simple_repeat Simple_repeat 1 22 0 3 1360 324 230 48 36 chr3 101656108 101656344 -57943439 + (CATATA)n Simple_repeat Simple_repeat 1 238 0 3 1360 376 203 14 0 chr3 101656604 101656678 -57943105 + tRNA-Ala-GCY_ tRNA tRNA 1 75 0 3 1360 273 332 95 26 chr3 101656980 101657169 -57942614 + MLT1D LTR MaLR 14 215 -290 3 1360 485 276 17 74 chr3 101658419 101658595 -57941188 - Lx8 LINE L1 -108 7365 7200 3 1360 357 24 0 0 chr3 101658687 101658729 -57941054 + (CA)n Simple_repeat Simple_repeat 2 43 0 3 1360 44 20 0 0 chr3 101659673 101659724 -57940059 + AT_rich Low_complexity Low_complexity 1 51 0 3 1360 863 292 46 14 chr3 101659764 101660045 -57939738 + B4A SINE B4 3 292 0 3 1360 523 272 11 80 chr3 101660094 101660270 -57939513 - RSINE1 SINE B4 0 165 2 3 1360 409 47 75 45 chr3 101660318 101660385 -57939398 - B1_Mur4 SINE Alu 0 150 82 3 1360 284 301 14 0 chr3 101660510 101660583 -57939200 - RSINE1 SINE B4 -36 129 56 3 1360 204 67 0 0 chr3 101660949 101660979 -57938804 + (TTTTTG)n Simple_repeat Simple_repeat 5 34 0 3 1360 1185 54 0 0 chr3 101660979 101661126 -57938657 - B1_Mus2 SINE Alu 0 147 1 3 1360 983 72 227 7 chr3 101661127 101661281 -57938502 - B2_Mm2 SINE B2 -7 188 1 3 1360 1104 222 105 64 chr3 101662306 101662774 -57937009 + RLTR11A LTR ERVK 21 525 -3 3 1360 332 59 20 0 chr3 101662807 101662858 -57936925 + (TA)n Simple_repeat Simple_repeat 1 52 0 3 1360 804 225 44 0 chr3 101664530 101664690 -57935093 - ID_B1 SINE B4 -5 219 53 3 1360 237 33 0 0 chr3 101665704 101665734 -57934049 + (TG)n Simple_repeat Simple_repeat 1 30 0 3 1360 200 309 129 18 chr3 101666425 101666580 -57933203 + MIR SINE MIR 99 255 -7 3 1360 322 331 39 0 chr3 101667029 101667156 -57932627 + MER3 DNA MER1_type 10 141 -68 3 1360 367 273 34 60 chr3 101667148 101667265 -57932518 - PB1D9 SINE Alu -5 115 2 3 1360 952 230 25 20 chr3 101667287 101667491 -57932292 - B3 SINE B2 -2 214 10 3 1360 449 95 218 1 chr3 101668195 101668282 -57931501 + ORR1C2 LTR MaLR 286 384 0 3 1360 3096 69 20 0 chr3 101669149 101669539 -57930244 - MTB LTR MaLR 0 400 3 3 1360 261 0 0 0 chr3 101670193 101670222 -57929561 + (CAAAA)n Simple_repeat Simple_repeat 4 32 0 3 1360 605 338 73 35 chr3 101670413 101670756 -57929027 + RMER5 LTR ERV1 155 510 -24 3 1360 221 179 83 67 chr3 101671593 101671653 -57928130 - PB1 SINE Alu -1 126 66 3 1360 337 243 51 51 chr3 101671741 101671760 -57928023 - B1F SINE Alu 0 149 33 3 1360 516 214 0 0 chr3 101671760 101671858 -57927925 - ID_B1 SINE B4 -13 211 114 3 1360 321 226 110 27 chr3 101671897 101672026 -57927757 - L1M3 LINE L1 -1369 4774 4642 3 1360 479 162 34 81 chr3 101672157 101672305 -57927478 - RMER17C LTR ERVK -135 275 135 3 1360 347 320 215 0 chr3 101672319 101672519 -57927264 - L1MEc LINE L1 -1639 5367 5125 3 1360 444 116 0 0 chr3 101672537 101672623 -57927160 + (TG)n Simple_repeat Simple_repeat 1 86 0 3 1360 256 260 14 14 chr3 101672626 101672700 -57927083 - RSINE1 SINE B4 -25 140 67 3 1360 345 333 49 18 chr3 101672809 101673032 -57926751 - L1MEc LINE L1 -2081 4925 4696 3 1360 549 288 107 38 chr3 101673250 101673860 -57925923 - L1MEc LINE L1 -2771 4235 3584 3 1360 600 286 139 81 chr3 101674125 101674832 -57924951 - L1MEc LINE L1 -5054 2033 1391 3 1360 257 238 11 101 chr3 101675068 101675246 -57924537 + CT-rich Low_complexity Low_complexity 2 163 0 3 1360 218 351 53 11 chr3 101675851 101675946 -57923837 + L2b LINE L2 3196 3294 -81 3 1360 290 338 157 13 chr3 101677143 101677302 -57922481 + L3b LINE CR1 180 361 -121 3 1360 470 368 22 0 chr3 101678395 101678531 -57921252 - B1F1 SINE Alu -10 139 1 3 1360 1019 208 62 5 chr3 101678584 101678792 -57920991 - ID_B1 SINE B4 -4 220 1 3 1360 312 27 0 0 chr3 101678893 101678930 -57920853 + (TG)n Simple_repeat Simple_repeat 2 38 0 3 1360 397 257 40 0 chr3 101678941 101679042 -57920741 - RSINE1 SINE B4 -57 108 4 3 1360 226 271 0 56 chr3 101679862 101679952 -57919831 - MIR SINE MIR -6 256 172 3 1360 246 308 57 49 chr3 101680309 101680432 -57919351 - MIRb SINE MIR -141 127 1 3 1360 339 150 0 0 chr3 101683156 101683216 -57916567 + (CA)n Simple_repeat Simple_repeat 1 60 0 3 1360 252 0 0 0 chr3 101683770 101683798 -57915985 + (GTTTG)n Simple_repeat Simple_repeat 2 29 0 3 1360 371 250 198 8 chr3 101684516 101684637 -57915146 - B1F1 SINE Alu 0 149 6 3 1360 330 26 0 0 chr3 101685098 101685137 -57914646 + (TG)n Simple_repeat Simple_repeat 1 39 0 3 1360 448 251 189 25 chr3 101685145 101685389 -57914394 - B4A SINE B4 -4 288 5 3 1360 505 297 32 13 chr3 101687951 101688108 -57911675 - RSINE1 SINE B4 -4 161 2 3 1360 196 312 56 8 chr3 101688158 101688284 -57911499 + L2a LINE L2 3208 3339 -87 3 1360 933 154 0 13 chr3 101688661 101688812 -57910971 - B1_Mur4 SINE Alu 0 150 2 3 1360 342 0 0 0 chr3 101688975 101689013 -57910770 + (TG)n Simple_repeat Simple_repeat 2 39 0 3 1360 307 355 21 69 chr3 101689195 101689265 -57910518 + MIRb SINE MIR 19 87 -181 3 1360 1372 113 108 0 chr3 101689265 101689469 -57910314 + URR1A DNA MER1_type 1 226 0 3 1360 307 355 21 69 chr3 101689469 101689543 -57910240 + MIRb SINE MIR 88 156 -112 3 1360 981 271 43 58 chr3 101689620 101689996 -57909787 - MTEa LTR MaLR -9 370 1 3 1360 3436 225 51 30 chr3 101691722 101692565 -57907218 + Lx9 LINE L1 6647 7507 -137 3 1360 39093 6 0 0 chr3 101692566 101697939 -57901844 + L1Md_A LINE L1 214 5586 -297 3 1360 9226 2 0 0 chr3 101697939 101698935 -57900848 + L1Md_A LINE L1 5587 6582 0 3 1360 320 180 109 72 chr3 101698952 101699090 -57900693 + Lx9 LINE L1 7502 7644 0 3 1360 208 256 0 0 chr3 101699329 101699372 -57900411 + (TG)n Simple_repeat Simple_repeat 1 43 0 3 1360 402 285 326 5 chr3 101699390 101699610 -57900173 - B4A SINE B4 -1 291 1 3 1360 1397 233 123 5 chr3 101699618 101699993 -57899790 + MTD LTR MaLR 1 419 0 3 1360 717 201 6 86 chr3 101699995 101700169 -57899614 + RSINE1 SINE B4 6 165 0 3 1360 269 344 41 62 chr3 101700169 101700190 -57899593 + B3A SINE B2 5 195 -3 3 1360 853 185 87 33 chr3 101702463 101702647 -57897136 + B3 SINE B2 1 194 -22 3 1360 928 269 117 12 chr3 101702663 101703027 -57896756 + L1MB3 LINE L1 5787 6162 -9 3 1360 549 0 0 0 chr3 101703337 101703398 -57896385 + (TC)n Simple_repeat Simple_repeat 2 62 0 3 1360 3856 82 34 8 chr3 101704892 101705420 -57894363 - L1Md_F2 LINE L1 -1 6581 6040 3 1360 1180 148 12 132 chr3 101706619 101706869 -57892914 - URR1B DNA MER1_type 0 225 6 4 1360 209 179 28 56 chr3 101707753 101707824 -57891959 + C-rich Low_complexity Low_complexity 1 69 0 4 1360 222 301 55 0 chr3 101708133 101708206 -57891577 - B1F2 SINE Alu -67 82 6 4 1360 219 259 45 80 chr3 101709807 101709895 -57889888 - RSINE1 SINE B4 -78 87 3 4 1360 319 277 88 10 chr3 101710550 101710652 -57889131 - PB1D10 SINE Alu -7 110 1 4 1360 469 248 25 113 chr3 101711299 101711458 -57888325 + B3A SINE B2 2 146 -52 4 1360 549 250 0 16 chr3 101711458 101711821 -57887962 + CT-rich Low_complexity Low_complexity 1 357 0 4 21 242 276 0 31 chr3 101711824 101711921 -57887862 + SUBTEL_sa Satellite Satellite 2 95 -79 4 1361 433 157 0 63 chr3 101711896 101711991 -57887792 + (TCTCTG)n Simple_repeat Simple_repeat 2 90 0 4 1361 25 0 0 0 chr3 101712037 101712062 -57887721 + AT_rich Low_complexity Low_complexity 1 25 0 4 1361 1790 185 49 6 chr3 101712220 101712568 -57887215 - ORR1D1 LTR MaLR 0 374 12 4 1361 252 313 0 10 chr3 101713220 101713320 -57886463 + GA-rich Low_complexity Low_complexity 2 100 0 4 1361 385 331 67 47 chr3 101713325 101713474 -57886309 - ID_B1 SINE B4 -13 211 60 4 1361 591 276 11 30 chr3 101713474 101713496 -57886287 - B1_Mur1 SINE Alu -13 136 2 4 1361 612 257 149 34 chr3 101713536 101713858 -57885925 + RLTR10D LTR ERVK 1 359 0 4 1361 381 262 19 28 chr3 101714590 101714696 -57885087 + PB1 SINE Alu 21 125 -2 4 1361 415 180 29 0 chr3 101714719 101714798 -57884985 + ID4 SINE ID 15 95 -57 4 1361 370 362 68 21 chr3 101715022 101715214 -57884569 + LTR82A LTR ERVL 596 796 -76 4 1361 225 108 0 0 chr3 101715310 101715347 -57884436 + (CAGA)n Simple_repeat Simple_repeat 2 38 0 4 1361 273 258 15 0 chr3 101715406 101715472 -57884311 - ID4_ SINE ID -15 68 2 4 1361 409 284 95 19 chr3 101715598 101715756 -57884027 + L1MDa LINE L1 89 258 -6375 4 1361 376 231 31 55 chr3 101716669 101716797 -57882986 + L1MD1 LINE L1 6118 6242 0 4 1361 239 289 73 30 chr3 101717014 101717178 -57882605 + L1MC4 LINE L1 7168 7338 -704 4 1361 2314 190 33 80 chr3 101717305 101717946 -57881837 + RMER19C LTR ERVK 1 611 0 4 1361 302 269 191 9 chr3 101718616 101718721 -57881062 + MIRb SINE MIR 26 149 -119 4 1361 575 227 207 0 chr3 101719532 101719581 -57880202 + ID SINE ID 2 81 -143 4 1361 391 333 50 0 chr3 101719581 101719722 -57880061 + B1F1 SINE Alu 1 148 -1 4 1361 937 186 108 0 chr3 101719757 101719951 -57879832 + B3 SINE B2 2 216 0 4 1361 221 180 20 0 chr3 101719957 101720007 -57879776 + GA-rich Low_complexity Low_complexity 2 52 0 4 1361 246 32 0 0 chr3 101720046 101720077 -57879706 + (TTGTG)n Simple_repeat Simple_repeat 4 34 0 4 1361 207 133 0 0 chr3 101720337 101720382 -57879401 + (A)n Simple_repeat Simple_repeat 1 45 0 4 1361 1478 58 21 0 chr3 101720958 101721148 -57878635 - B2_Mm2 SINE B2 0 195 2 4 1361 416 278 27 27 chr3 101724005 101724058 -57875725 - B3A SINE B2 0 198 149 4 1361 357 24 0 0 chr3 101724058 101724100 -57875683 + (TG)n Simple_repeat Simple_repeat 2 43 0 4 1361 416 278 27 27 chr3 101724100 101724194 -57875589 - B3A SINE B2 -50 148 52 4 1361 480 183 2 0 chr3 101724810 101724907 -57874876 + PB1D9 SINE Alu 2 100 -20 4 1361 198 91 0 0 chr3 101724912 101724945 -57874838 + (T)n Simple_repeat Simple_repeat 1 33 0 4 1361 1185 68 0 0 chr3 101724945 101725092 -57874691 - B1_Mm SINE Alu 0 147 1 4 1361 616 189 8 30 chr3 101725482 101725613 -57874170 - RSINE1 SINE B4 -35 130 3 4 1361 1090 93 0 0 chr3 101725634 101725774 -57874009 + B1_Mus1 SINE Alu 2 141 -7 4 1361 240 35 0 0 chr3 101725774 101725803 -57873980 + (CAA)n Simple_repeat Simple_repeat 2 30 0 4 1361 404 312 138 31 chr3 101725924 101726185 -57873598 + MLT2F LTR ERVL 68 356 -307 4 1361 273 150 95 48 chr3 101727242 101727305 -57872478 - ID4 SINE ID 0 83 18 4 1361 286 230 0 149 chr3 101727335 101727422 -57872361 - B1F SINE Alu -62 87 14 4 1361 25 31 0 0 chr3 101727840 101727872 -57871911 + GC_rich Low_complexity Low_complexity 1 32 0 4 1361 21 36 0 0 chr3 101727920 101727948 -57871835 + GC_rich Low_complexity Low_complexity 1 28 0 4 1361 258 292 23 23 chr3 101728138 101728271 -57871512 + G-rich Low_complexity Low_complexity 4 136 0 4 1361 994 118 153 5 chr3 101728802 101728998 -57870785 + URR1A DNA MER1_type 1 225 -1 4 1361 739 247 40 89 chr3 101729028 101729353 -57870430 - MTE2a LTR MaLR -14 365 57 4 1361 227 237 247 0 chr3 101729688 101729781 -57870002 + B1_Mm SINE Alu 11 126 -21 4 1361 21 0 0 0 chr3 101730153 101730174 -57869609 + AT_rich Low_complexity Low_complexity 1 21 0 4 1361 218 311 108 32 chr3 101730316 101730409 -57869374 - PB1 SINE Alu -22 105 6 4 1361 22 0 0 0 chr3 101730595 101730617 -57869166 + AT_rich Low_complexity Low_complexity 1 22 0 4 1361 1471 132 61 8 chr3 101731075 101731435 -57868348 + RLTR15 LTR ERVK 1 288 -71 4 1361 436 100 0 14 chr3 101731410 101731481 -57868302 - RLTR15 LTR ERVK -289 70 1 4 1361 536 229 49 146 chr3 101731553 101731717 -57868066 - B1_Mur1 SINE Alu 0 149 2 4 1361 230 305 17 0 chr3 101731668 101731727 -57868056 - B4A SINE B4 -157 135 76 4 1361 568 195 17 0 chr3 101731837 101731955 -57867828 - B1_Mur1 SINE Alu -6 143 24 4 1361 474 229 141 49 chr3 101732212 101732396 -57867387 + MTEa LTR MaLR 18 218 -161 4 1361 668 184 35 28 chr3 101732857 101733002 -57866781 - B1_Mus2 SINE Alu 0 147 2 4 1361 22 35 0 0 chr3 101733779 101733808 -57865975 + AT_rich Low_complexity Low_complexity 1 29 0 4 1361 5145 106 102 4 chr3 101735025 101735350 -57864433 + RMER17D LTR ERVK 1 394 -495 4 1361 687 57 29 0 chr3 101735350 101735455 -57864328 + (TCTCC)n Simple_repeat Simple_repeat 2 109 0 4 1361 5145 106 102 4 chr3 101735455 101735937 -57863846 + RMER17D LTR ERVK 395 887 -2 4 1361 330 26 0 0 chr3 101736783 101736822 -57862961 + (TC)n Simple_repeat Simple_repeat 1 39 0 4 1361 3272 231 65 77 chr3 101736878 101737848 -57861935 - RMER1B Other Other -7 1059 100 4 1361 2129 141 90 14 chr3 101737848 101738214 -57861569 + ORR1B1 LTR MaLR 1 394 0 4 1361 3272 231 65 77 chr3 101738214 101738313 -57861470 - RMER1B Other Other -967 99 2 4 1361 266 326 0 0 chr3 101738697 101738786 -57860997 - RMER1B Other Other -917 149 61 4 1361 207 225 0 0 chr3 101738909 101738949 -57860834 + A-rich Low_complexity Low_complexity 1 40 0 4 1361 2265 197 100 25 chr3 101738996 101739506 -57860277 - Lx7 LINE L1 -450 7246 6699 4 1361 462 248 34 8 chr3 101739507 101739625 -57860158 - RSINE1 SINE B4 -44 121 1 4 1361 468 244 86 8 chr3 101739688 101739816 -57859967 + B4A SINE B4 1 138 -154 4 1361 259 232 48 24 chr3 101741370 101741454 -57858329 - MER46C DNA MER2_type -9 329 244 4 1361 491 240 56 38 chr3 101742038 101742198 -57857585 + RSINE1 SINE B4 3 165 0 4 1361 746 165 31 0 chr3 101742217 101742344 -57857439 + B1_Mur2 SINE Alu 5 135 -14 4 1361 360 0 0 0 chr3 101742346 101742386 -57857397 + (TAAA)n Simple_repeat Simple_repeat 2 41 0 4 1361 279 0 0 0 chr3 101742775 101742806 -57856977 + (TG)n Simple_repeat Simple_repeat 2 32 0 4 1361 239 143 0 0 chr3 101742927 101742962 -57856821 + B1_Mur4 SINE Alu 2 36 -114 4 1361 431 211 0 0 chr3 101743081 101743171 -57856612 + MTC LTR MaLR 332 421 0 4 1361 1222 93 71 0 chr3 101743661 101743843 -57855940 - B2_Mm2 SINE B2 0 195 1 4 1361 470 106 141 0 chr3 101744210 101744295 -57855488 - PB1D9 SINE Alu -4 116 20 4 1361 842 252 135 23 chr3 101744470 101744774 -57855009 - L1M1 LINE L1 -533 5770 5433 4 1361 345 244 58 0 chr3 101744785 101744871 -57854912 - PB1D7 SINE Alu -1 119 29 4 1361 456 224 126 0 chr3 101744875 101745018 -57854765 - L1M1 LINE L1 -879 5418 5258 4 1361 241 253 67 0 chr3 101745728 101745803 -57853980 + MTE-int LTR MaLR 1100 1179 -401 4 1361 1201 75 98 6 chr3 101745989 101746163 -57853620 - B2_Mm2 SINE B2 -5 190 1 4 1361 657 275 58 58 chr3 101746243 101746552 -57853231 + ORR1E LTR MaLR 1 309 -50 4 1361 2140 164 95 3 chr3 101746578 101746958 -57852825 - MTC LTR MaLR -2 419 5 4 1361 808 251 49 5 chr3 101747034 101747238 -57852545 - B3 SINE B2 -1 215 3 4 1361 442 284 0 0 chr3 101747603 101747705 -57852078 - B1F SINE Alu -14 135 34 4 1361 828 266 19 0 chr3 101749033 101749240 -57850543 - B3 SINE B2 -5 211 1 4 1361 1294 225 101 17 chr3 101749777 101750125 -57849658 - MTE2a LTR MaLR -2 377 1 4 1361 868 250 90 32 chr3 101750515 101750792 -57848991 + MTEa LTR MaLR 3 295 -84 4 1361 413 281 21 14 chr3 101750793 101750934 -57848849 + MTEa LTR MaLR 236 377 -2 4 1361 1230 136 41 18 chr3 101751533 101751751 -57848032 - Lx2 LINE L1 0 6997 6775 4 1361 3862 103 36 34 chr3 101751749 101752333 -57847450 - Lx2 LINE L1 -352 6645 6061 4 1361 585 0 0 0 chr3 101752492 101752557 -57847226 + (T)n Simple_repeat Simple_repeat 1 65 0 4 1361 324 212 12 48 chr3 101753361 101753445 -57846338 - HAL1-3A_ME LINE L1 -802 2056 1976 4 1361 251 341 0 0 chr3 101753445 101753527 -57846256 + (TG)n Simple_repeat Simple_repeat 2 83 0 4 1361 1067 210 127 7 chr3 101753899 101754191 -57845592 + ORR1D1 LTR MaLR 14 340 -34 4 1361 220 175 17 17 chr3 101756460 101756518 -57843265 + (TTATA)n Simple_repeat Simple_repeat 2 59 0 4 1361 26 30 0 0 chr3 101756524 101756557 -57843226 + AT_rich Low_complexity Low_complexity 1 33 0 4 1361 784 298 28 20 chr3 101757522 101757826 -57841957 + B4A SINE B4 3 292 0 4 1361 485 115 11 0 chr3 101757838 101757925 -57841858 + (CA)n Simple_repeat Simple_repeat 2 89 0 4 1361 261 0 0 0 chr3 101758171 101758200 -57841583 + (CTG)n Simple_repeat Simple_repeat 3 31 0 5 1361 456 51 0 0 chr3 101758463 101758522 -57841261 + (ATTG)n Simple_repeat Simple_repeat 2 60 0 5 1361 1004 196 28 9 chr3 101758522 101758722 -57841061 - B3 SINE B2 -10 206 3 5 1361 38 0 0 0 chr3 101758724 101758762 -57841021 + AT_rich Low_complexity Low_complexity 1 38 0 5 1361 26 30 0 0 chr3 101759253 101759286 -57840497 + AT_rich Low_complexity Low_complexity 1 33 0 5 1361 228 261 0 0 chr3 101759289 101759335 -57840448 - tRNA-Ala-GCY_ tRNA tRNA -16 59 14 5 1361 823 276 31 72 chr3 101759466 101759826 -57839957 - MLT1A LTR MaLR -26 348 4 5 1361 507 33 0 0 chr3 101760060 101760121 -57839662 + (TC)n Simple_repeat Simple_repeat 1 61 0 5 1361 3120 49 28 3 chr3 101760872 101761262 -57838521 - MTB LTR MaLR 0 400 1 5 1361 1497 270 47 5 chr3 101761309 101761711 -57838072 - MTD LTR MaLR 0 419 1 5 1361 1005 150 0 0 chr3 101762777 101762957 -57836826 + (TG)n Simple_repeat Simple_repeat 1 180 0 5 1361 243 0 0 0 chr3 101764179 101764206 -57835577 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 5 1361 507 184 25 50 chr3 101764295 101764415 -57835368 - B1_Mur3 SINE Alu -10 139 23 5 1361 940 126 32 26 chr3 101764414 101764569 -57835214 - B3 SINE B2 -60 156 1 5 1361 360 111 0 0 chr3 101764724 101764778 -57835005 + (CATA)n Simple_repeat Simple_repeat 2 55 0 5 1361 24 32 0 0 chr3 101764779 101764810 -57834973 + AT_rich Low_complexity Low_complexity 1 31 0 5 1361 436 307 45 35 chr3 101765794 101765993 -57833790 + MER3 DNA MER1_type 1 201 -8 5 1361 504 288 8 11 chr3 101766518 101766675 -57833108 + ID_B1 SINE B4 63 216 -76 5 1361 308 182 171 0 chr3 101766675 101766763 -57833020 + ID_B1 SINE B4 105 207 -17 5 1361 291 266 25 0 chr3 101768770 101768849 -57830934 + PB1D10 SINE Alu 37 117 0 5 1361 1033 263 26 19 chr3 101768852 101769119 -57830664 + B4A SINE B4 2 270 -22 5 1361 384 22 0 0 chr3 101769126 101769171 -57830612 + (CA)n Simple_repeat Simple_repeat 1 45 0 5 1361 359 246 106 15 chr3 101770304 101770436 -57829347 + ID_B1 SINE B4 70 213 -11 5 1361 765 99 49 16 chr3 101770735 101771042 -57828741 + (TG)n Simple_repeat Simple_repeat 1 316 0 5 1361 219 200 40 0 chr3 101771367 101771417 -57828366 + GA-rich Low_complexity Low_complexity 2 53 0 5 1361 360 0 0 0 chr3 101772234 101772274 -57827509 + (CA)n Simple_repeat Simple_repeat 1 40 0 5 1361 477 262 117 57 chr3 101772375 101772523 -57827260 - L1ME3 LINE L1 -222 5940 5802 5 1361 1185 187 34 0 chr3 101772523 101772732 -57827051 - B3 SINE B2 0 216 1 5 1361 477 262 117 57 chr3 101772732 101772830 -57826953 - L1ME3 LINE L1 -361 5801 5679 5 1361 488 176 110 0 chr3 101772848 101772939 -57826844 - B1F2 SINE Alu -24 125 25 5 1361 2293 216 104 43 chr3 101772946 101773651 -57826132 + Lx9 LINE L1 6897 7644 0 5 1361 515 268 7 0 chr3 101774638 101774776 -57825007 + MLT1A0 LTR MaLR 226 364 -1 5 1361 301 273 71 0 chr3 101775149 101775248 -57824535 + PB1D10 SINE Alu 6 111 -6 5 1361 24 67 0 0 chr3 101775283 101775328 -57824455 + AT_rich Low_complexity Low_complexity 1 45 0 5 1361 950 121 0 0 chr3 101775331 101775471 -57824312 + B1_Mur3 SINE Alu 10 149 0 5 1361 379 332 73 56 chr3 101775465 101775915 -57823868 - Arthur1 DNA Tip100 -154 3793 3336 5 1361 486 248 147 7 chr3 101776006 101776156 -57823627 - B4A SINE B4 -121 171 1 5 1361 1176 193 249 123 chr3 101776386 101776815 -57822968 + MT2A LTR ERVL 1 465 -68 5 1361 444 19 0 0 chr3 101776815 101776868 -57822915 + (TG)n Simple_repeat Simple_repeat 2 54 0 5 1361 1176 193 249 123 chr3 101776868 101776911 -57822872 + MT2A LTR ERVL 466 532 -1 5 1361 2234 191 7 0 chr3 101776915 101777339 -57822444 + ORR1D2-int LTR MaLR 5 431 -1078 5 1361 1192 113 25 10 chr3 101777324 101777521 -57822262 + MTC LTR MaLR 222 421 0 5 1361 267 152 0 0 chr3 101777888 101777934 -57821849 + CT-rich Low_complexity Low_complexity 4 49 0 5 1361 232 222 80 40 chr3 101777978 101778053 -57821730 - B4 SINE B4 -206 86 9 5 1361 258 32 0 0 chr3 101778222 101778253 -57821530 + (TAA)n Simple_repeat Simple_repeat 2 32 0 5 1361 618 254 77 52 chr3 101778378 101778683 -57821100 + RLTR15 LTR ERVK 45 332 -27 5 1361 303 317 86 40 chr3 101779587 101779675 -57820108 - L1M5 LINE L1 -2921 3225 3133 5 1361 1262 41 0 0 chr3 101779675 101779822 -57819961 - B1_Mus2 SINE Alu 0 147 1 5 1361 303 317 86 40 chr3 101779822 101779884 -57819899 - L1M5 LINE L1 -3014 3132 3068 5 1361 242 339 42 95 chr3 101780221 101780485 -57819298 + ORR1D2 LTR MaLR 119 368 -2 5 1361 785 173 57 7 chr3 101780516 101780656 -57819127 - B1_Mur1 SINE Alu -2 147 1 5 1361 204 244 22 0 chr3 101781299 101781344 -57818439 + MIR SINE MIR 129 174 -88 5 1361 923 246 132 60 chr3 101781399 101781801 -57817982 - RLTR28B LTR ERVL -23 458 28 5 1361 601 255 110 7 chr3 101781824 101781978 -57817805 - B3A SINE B2 -28 170 1 5 1361 239 342 71 52 chr3 101782936 101782980 -57816803 + Tigger15a DNA TcMar 15 62 -653 5 1361 1069 76 13 0 chr3 101782980 101783137 -57816646 + (GAAA)n Simple_repeat Simple_repeat 2 160 0 5 1361 239 342 71 52 chr3 101783137 101783246 -57816537 + Tigger15a DNA TcMar 63 171 -544 5 1361 413 258 81 0 chr3 101783582 101783693 -57816090 + B1_Mur1 SINE Alu 18 137 -12 5 1361 213 39 0 0 chr3 101783693 101783719 -57816064 + (CAAA)n Simple_repeat Simple_repeat 1 26 0 5 1361 806 196 7 20 chr3 101783728 101783879 -57815904 + B1_Mur2 SINE Alu 1 149 0 5 1361 205 300 157 8 chr3 101784087 101784208 -57815575 - L3 LINE CR1 -126 4363 4225 5 1361 605 200 72 22 chr3 101784301 101784439 -57815344 - B1_Mur1 SINE Alu -2 147 3 5 1361 269 266 50 50 chr3 101784345 101784464 -57815319 - MT2B LTR ERVL -345 256 138 5 1361 728 332 92 79 chr3 101784491 101785024 -57814759 - L3 LINE CR1 -627 3862 3323 5 1361 705 266 19 19 chr3 101785382 101785539 -57814244 + B3A SINE B2 4 160 -38 5 1361 486 83 0 0 chr3 101785545 101785617 -57814166 + (CA)n Simple_repeat Simple_repeat 2 73 0 5 1361 283 270 61 17 chr3 101785694 101785875 -57813908 + L1M5 LINE L1 3074 3262 -2884 5 1361 966 166 0 0 chr3 101786323 101786498 -57813285 + (CA)n Simple_repeat Simple_repeat 1 175 0 5 1361 241 231 0 124 chr3 101786657 101786746 -57813037 + L1M5 LINE L1 3940 4017 -2129 5 1361 2664 222 85 64 chr3 101786759 101787556 -57812227 + RMER1C Other Other 170 1342 0 5 1361 463 349 36 18 chr3 101787979 101788198 -57811585 - B4A SINE B4 -67 225 3 5 1361 929 268 19 5 chr3 101788368 101788578 -57811205 - ID_B1 SINE B4 -1 223 11 5 1361 279 0 0 0 chr3 101788725 101788756 -57811027 + (CAGA)n Simple_repeat Simple_repeat 2 32 0 5 1361 344 305 83 24 chr3 101789245 101789413 -57810370 + MIRc SINE MIR 51 228 -40 5 1361 212 240 39 20 chr3 101789987 101790038 -57809745 + MIR SINE MIR 34 85 -177 5 1361 185 196 115 19 chr3 101790116 101790168 -57809615 + MIRb SINE MIR 201 257 -11 5 1361 233 98 24 0 chr3 101790512 101790553 -57809230 + (TG)n Simple_repeat Simple_repeat 1 42 0 5 1361 261 83 0 0 chr3 101790617 101790653 -57809130 + (TTG)n Simple_repeat Simple_repeat 1 36 0 5 1361 513 278 32 150 chr3 101790666 101790886 -57808897 - B4A SINE B4 -97 195 2 5 1361 736 221 15 7 chr3 101791136 101791293 -57808490 + Lx8 LINE L1 6577 6878 -766 5 1361 676 339 58 15 chr3 101791329 101791590 -57808193 + Lx8 LINE L1 7020 7291 -182 5 1361 393 39 0 0 chr3 101791616 101791667 -57808116 + (CA)n Simple_repeat Simple_repeat 2 52 0 5 1361 2070 220 54 12 chr3 101792188 101792672 -57807111 + RLTR11A2 LTR ERVK 24 527 0 5 1361 262 364 36 24 chr3 101793091 101793257 -57806526 + L1MDa LINE L1 41 208 -6432 5 1361 230 279 112 28 chr3 101793597 101793704 -57806079 + L1MDa LINE L1 816 931 -5616 5 1361 555 56 0 0 chr3 101793753 101793824 -57805959 + (TC)n Simple_repeat Simple_repeat 2 72 0 5 1361 255 305 20 69 chr3 101793824 101793926 -57805857 + L1MDa LINE L1 1026 1122 -5518 5 1361 432 0 0 0 chr3 101794824 101794872 -57804911 + (CA)n Simple_repeat Simple_repeat 2 49 0 5 1361 192 333 149 0 chr3 101795973 101796060 -57803723 - MIRc SINE MIR -120 148 49 5 1361 556 314 203 27 chr3 101796072 101796496 -57803287 - MLT1D LTR MaLR -4 463 1 5 1361 613 126 223 0 chr3 101797914 101798017 -57801766 - URR1A DNA MER1_type -96 130 5 5 1361 189 0 0 0 chr3 101798560 101798581 -57801202 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 5 1361 518 274 25 8 chr3 101798841 101798959 -57800824 - B1F SINE Alu -8 141 22 5 1361 557 147 60 8 chr3 101799099 101799216 -57800567 - RMER1C Other Other 0 1342 1220 5 1361 189 0 0 0 chr3 101799216 101799237 -57800546 + (TAAAA)n Simple_repeat Simple_repeat 2 22 0 5 1361 1763 248 112 106 chr3 101799394 101800275 -57799508 - RMER1B Other Other -156 910 46 5 1361 284 312 214 44 chr3 101800343 101800591 -57799192 + MTEa LTR MaLR 87 376 -3 5 1361 221 382 40 29 chr3 101800782 101800957 -57798826 - L3 LINE CR1 -1239 3250 3074 5 1361 378 0 0 0 chr3 101800961 101801003 -57798780 + (TTTA)n Simple_repeat Simple_repeat 1 42 0 5 1361 746 164 270 0 chr3 101801003 101801162 -57798621 - B3 SINE B2 -14 202 1 5 1361 331 366 9 0 chr3 101801764 101801876 -57797907 - LTR33 LTR ERVL -78 437 325 5 1361 307 298 92 7 chr3 101801877 101802029 -57797754 - LTR33 LTR ERVL -350 165 1 5 1361 412 306 94 42 chr3 101802052 101802264 -57797519 - L3 LINE CR1 -3282 1207 985 5 1361 1132 203 18 0 chr3 101802770 101802992 -57796791 - URR1A DNA MER1_type 0 226 1 5 1361 773 329 70 0 chr3 101803100 101803431 -57796352 + Lx8 LINE L1 6820 7173 -300 5 1361 766 192 140 6 chr3 101803544 101803722 -57796061 - ORR1D2 LTR MaLR 0 370 169 5 1361 228 245 0 19 chr3 101803924 101803978 -57795805 + (TG)n Simple_repeat Simple_repeat 2 54 0 5 1361 702 200 0 0 chr3 101803983 101804098 -57795685 - B1_Mur2 SINE Alu -31 118 4 5 1361 751 283 33 0 chr3 101804123 101804307 -57795476 - B3 SINE B2 -25 191 2 5 1361 306 0 0 0 chr3 101804327 101804361 -57795422 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 5 1361 258 216 188 51 chr3 101805326 101805443 -57794340 + L1MC4 LINE L1 7758 7890 -152 5 1361 297 0 0 0 chr3 101805495 101805528 -57794255 + (TG)n Simple_repeat Simple_repeat 1 33 0 5 1361 590 274 0 88 chr3 101805571 101805731 -57794052 - RSINE1 SINE B4 -17 148 3 6 1361 558 0 0 0 chr3 101805739 101805801 -57793982 + (TA)n Simple_repeat Simple_repeat 1 62 0 6 1361 532 256 110 13 chr3 101805976 101806130 -57793653 + MTD LTR MaLR 1 169 -250 6 1361 1690 186 110 6 chr3 101806134 101806469 -57793314 - ORR1D1 LTR MaLR -4 370 1 6 1361 966 184 52 24 chr3 101806489 101806701 -57793082 + MTD LTR MaLR 202 419 0 6 1361 414 291 13 84 chr3 101806710 101806864 -57792919 + B4A SINE B4 138 280 -12 6 1361 255 333 103 23 chr3 101807138 101807313 -57792470 - Charlie7 DNA MER1_type -516 2096 1908 6 1361 674 220 38 8 chr3 101807304 101807427 -57792356 + B1_Mur2 SINE Alu 13 140 -9 6 1361 1016 146 6 0 chr3 101807427 101807605 -57792178 + GA-rich Low_complexity Low_complexity 2 180 0 6 1361 426 268 58 37 chr3 101807748 101807938 -57791845 + L1MCc LINE L1 1175 1368 -5120 6 1361 339 25 0 0 chr3 101808285 101808325 -57791458 + (CA)n Simple_repeat Simple_repeat 1 40 0 6 1361 328 302 71 33 chr3 101808480 101808829 -57790954 + L1MCc LINE L1 2189 2541 -4561 6 1361 240 305 121 28 chr3 101808850 101809032 -57790751 + L1ME2 LINE L1 5801 5999 -165 6 1361 252 59 0 0 chr3 101809265 101809299 -57790484 + (TTTG)n Simple_repeat Simple_repeat 1 34 0 6 1361 379 320 83 22 chr3 101809320 101809550 -57790233 - L1MB7 LINE L1 -222 5962 5719 6 1361 574 280 77 0 chr3 101809650 101809818 -57789965 - B3A SINE B2 -16 182 2 6 1361 225 0 0 0 chr3 101809887 101809912 -57789871 + (TG)n Simple_repeat Simple_repeat 1 25 0 6 1361 297 0 0 0 chr3 101809972 101810005 -57789778 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 6 1361 939 81 0 0 chr3 101810005 101810129 -57789654 - B1_Mm SINE Alu -10 137 14 6 1361 561 64 0 0 chr3 101810483 101810561 -57789222 + (TC)n Simple_repeat Simple_repeat 2 79 0 6 1361 517 245 12 62 chr3 101810572 101810733 -57789050 - RSINE1 SINE B4 -12 153 1 6 1361 270 383 23 8 chr3 101810737 101810866 -57788917 + MIR SINE MIR 74 204 -58 6 1361 279 0 0 0 chr3 101810930 101810961 -57788822 + (CA)n Simple_repeat Simple_repeat 2 32 0 6 1361 453 81 0 0 chr3 101811103 101811165 -57788618 + (TG)n Simple_repeat Simple_repeat 1 62 0 6 1361 529 272 60 20 chr3 101811167 101811317 -57788466 - B3A SINE B2 -42 156 1 6 1361 269 306 0 96 chr3 101811391 101811485 -57788298 - MIRc SINE MIR -115 153 69 6 1361 227 321 76 18 chr3 101811813 101811962 -57787821 - L2c LINE L2 -60 3327 3146 6 1361 830 196 14 0 chr3 101812889 101813032 -57786751 + B1_Mur1 SINE Alu 5 149 0 6 1361 258 143 0 0 chr3 101813032 101813081 -57786702 + (GAAA)n Simple_repeat Simple_repeat 3 51 0 6 1361 183 42 0 0 chr3 101814744 101814768 -57785015 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 6 1361 558 0 0 0 chr3 101818402 101818464 -57781319 + (GAA)n Simple_repeat Simple_repeat 2 63 0 6 1361 574 240 7 44 chr3 101818977 101819112 -57780671 + ID_B1 SINE B4 93 222 -2 6 1361 221 391 0 0 chr3 101820102 101820189 -57779594 - L2b LINE L2 0 3375 3289 6 1361 294 341 78 23 chr3 101821577 101821706 -57778077 - MIRb SINE MIR -36 232 97 6 1361 264 250 157 94 chr3 101822240 101822399 -57777384 + URR1A DNA MER1_type 1 169 -57 6 1361 564 116 0 0 chr3 101822476 101822562 -57777221 + (CA)n Simple_repeat Simple_repeat 2 87 0 6 1361 399 41 0 0 chr3 101822873 101822922 -57776861 + (GA)n Simple_repeat Simple_repeat 1 49 0 6 1361 374 111 9 25 chr3 101823046 101823156 -57776627 - B2_Mm2 SINE B2 -3 192 47 6 1361 1305 84 22 6 chr3 101823186 101823366 -57776417 - B2_Mm2 SINE B2 -12 183 1 6 1361 718 247 22 22 chr3 101823402 101823584 -57776199 - B3A SINE B2 -16 182 1 6 1361 325 219 60 31 chr3 101823899 101824000 -57775783 + MIR SINE MIR 66 169 -39 6 1361 186 167 0 0 chr3 101824033 101824069 -57775714 + (TATG)n Simple_repeat Simple_repeat 1 36 0 6 1361 782 251 0 32 chr3 101824069 101824254 -57775529 - B3A SINE B2 -16 182 4 6 1361 270 0 0 0 chr3 101826709 101826739 -57773044 + (TGG)n Simple_repeat Simple_repeat 3 32 0 6 1361 309 51 0 0 chr3 101826741 101826780 -57773003 + (TCCCC)n Simple_repeat Simple_repeat 5 43 0 6 1361 630 124 25 0 chr3 101826915 101827036 -57772747 + (GA)n Simple_repeat Simple_repeat 1 124 0 6 1361 228 308 0 0 chr3 101827425 101827490 -57772293 + G-rich Low_complexity Low_complexity 63 127 0 6 1361 202 49 93 47 chr3 101827698 101827741 -57772042 + A-rich Low_complexity Low_complexity 2 46 0 6 1361 414 0 0 0 chr3 101827802 101827848 -57771935 + (TG)n Simple_repeat Simple_repeat 2 47 0 6 1361 182 333 52 45 chr3 101829869 101830023 -57769760 + L3 LINE CR1 893 1047 -3442 6 1361 1216 62 0 0 chr3 101830706 101830852 -57768931 + B1_Mm SINE Alu 2 147 0 6 1361 315 141 0 0 chr3 101830852 101830916 -57768867 + (A)n Simple_repeat Simple_repeat 1 64 0 6 1361 519 331 39 28 chr3 101830965 101831145 -57768638 + MER58B DNA MER1_type 143 324 -17 6 1361 225 217 118 11 chr3 101831381 101831474 -57768309 + L1M LINE L1 5259 5361 -818 6 1361 4093 178 82 132 chr3 101831536 101832615 -57767168 - RMER1B Other Other -5 1061 37 6 1361 646 227 45 34 chr3 101832615 101832793 -57766990 - L1M3e LINE L1 -6850 180 1 6 1361 741 191 28 7 chr3 101832834 101832976 -57766807 + B1_Mur3 SINE Alu 5 149 0 6 1361 252 222 125 0 chr3 101833381 101833445 -57766338 + MIRb SINE MIR 106 182 -86 6 1361 213 310 17 0 chr3 101833454 101833512 -57766271 + L2a LINE L2 3355 3413 -13 6 1361 319 364 9 14 chr3 101833674 101833886 -57765897 + HAL1 LINE L1 1544 1754 -753 6 1361 180 0 0 0 chr3 101833920 101833940 -57765843 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 6 1361 248 246 0 0 chr3 101833988 101834057 -57765726 + B1_Mur4 SINE Alu 82 150 0 6 1361 1086 137 2 0 chr3 101834128 101834540 -57765243 + (CA)n Simple_repeat Simple_repeat 1 412 0 6 1361 602 206 0 22 chr3 101834560 101834744 -57765039 + (CA)n Simple_repeat Simple_repeat 1 180 0 6 1361 297 0 0 0 chr3 101834974 101835007 -57764776 + (TAA)n Simple_repeat Simple_repeat 1 33 0 6 1361 564 290 48 41 chr3 101835607 101835877 -57763906 - L1MC5 LINE L1 -1041 6920 6649 6 1361 183 42 0 0 chr3 101836198 101836222 -57763561 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 6 1361 1187 68 0 7 chr3 101836225 101836373 -57763410 - B1_Mus2 SINE Alu 0 147 1 6 1361 282 308 46 37 chr3 101836695 101836803 -57762980 + Tigger1 DNA MER2_type 22 130 -2288 6 1361 223 333 54 84 chr3 101836860 101837027 -57762756 - B2_Mm2 SINE B2 -28 167 6 6 1361 272 207 17 33 chr3 101837049 101837109 -57762674 + Tigger1 DNA MER2_type 2255 2313 -105 6 1361 548 228 89 8 chr3 101837105 101837229 -57762554 - B1F SINE Alu -7 142 9 6 1361 334 244 152 96 chr3 101837229 101837281 -57762502 - B4 SINE B4 -70 219 45 6 1361 677 283 6 11 chr3 101837602 101837777 -57762006 - B2_Mm2 SINE B2 -21 174 1 6 1361 374 229 24 0 chr3 101837869 101837952 -57761831 + B3 SINE B2 127 211 -5 6 1361 27 0 0 0 chr3 101837956 101837983 -57761800 + AT_rich Low_complexity Low_complexity 1 27 0 6 1361 481 230 80 0 chr3 101838329 101838442 -57761341 + B3 SINE B2 1 122 -94 6 1361 251 242 44 29 chr3 101839190 101839258 -57760525 + RMER20B LTR ERVK 541 609 -18 6 1361 203 184 25 50 chr3 101839260 101839380 -57760403 + (CATATA)n Simple_repeat Simple_repeat 6 122 0 6 1361 3249 29 3 0 chr3 101839406 101839786 -57759997 + MTA_Mm LTR MaLR 1 381 -15 6 1361 418 335 31 12 chr3 101839788 101839948 -57759835 - MT2A LTR ERVL -105 428 266 6 1361 644 298 53 31 chr3 101839968 101840193 -57759590 - MTEa LTR MaLR -144 235 6 6 1361 550 250 156 0 chr3 101840640 101840768 -57759015 + ID_B1 SINE B4 77 224 0 6 1361 521 257 229 0 chr3 101841037 101841177 -57758606 + B3A SINE B2 1 172 -26 6 1361 2514 138 39 5 chr3 101841626 101842033 -57757750 + MTC LTR MaLR 1 421 0 6 1362 180 341 106 0 chr3 101843623 101843708 -57756075 - MIRm SINE MIR -20 256 163 6 1362 427 308 280 19 chr3 101844202 101844616 -57755167 + MER77 LTR ERVL 86 607 0 6 1362 1277 221 55 150 chr3 101844688 101844948 -57754835 - MTD LTR MaLR -5 414 211 6 1362 624 254 0 0 chr3 101844948 101845078 -57754705 - B1_Mur1 SINE Alu -15 134 5 6 1362 1277 221 55 150 chr3 101845078 101845270 -57754513 - MTD LTR MaLR -209 210 5 6 1362 887 230 243 29 chr3 101845571 101845920 -57753863 - MTD LTR MaLR -16 403 1 6 1362 1351 229 42 57 chr3 101846148 101846437 -57753346 - MTEa LTR MaLR 0 379 96 6 1362 230 0 33 0 chr3 101846437 101846467 -57753316 + (CAAA)n Simple_repeat Simple_repeat 1 31 0 6 1362 1351 229 42 57 chr3 101846467 101846561 -57753222 - MTEa LTR MaLR -284 95 2 6 1362 1272 273 68 19 chr3 101847291 101847612 -57752171 + ORR1D2 LTR MaLR 1 337 -33 6 1362 321 102 0 0 chr3 101847756 101847807 -57751976 + ORR1D2 LTR MaLR 311 370 0 6 1362 225 259 33 33 chr3 101848062 101848122 -57751661 - Charlie6 DNA MER1_type -18 3482 3423 6 1362 1055 139 0 6 chr3 101848199 101848380 -57751403 + (GGA)n Simple_repeat Simple_repeat 1 180 0 6 1362 1188 111 0 0 chr3 101848401 101848581 -57751202 + (GGA)n Simple_repeat Simple_repeat 1 180 0 6 1362 921 189 0 0 chr3 101848582 101848837 -57750946 + GA-rich Low_complexity Low_complexity 1 255 0 6 1362 190 262 55 77 chr3 101849717 101849808 -57749975 + MIRm SINE MIR 77 165 -111 6 1362 265 285 165 23 chr3 101850355 101850488 -57749295 - B4A SINE B4 -47 245 94 6 1362 512 255 0 0 chr3 101850390 101850492 -57749291 - PB1D7 SINE Alu -14 106 5 6 1362 222 200 0 0 chr3 101850565 101850605 -57749178 + GA-rich Low_complexity Low_complexity 3 42 0 6 1362 204 40 0 0 chr3 101850884 101850909 -57748874 + (TGG)n Simple_repeat Simple_repeat 1 25 0 6 1362 342 337 70 70 chr3 101852240 101852597 -57747186 + L1MC5 LINE L1 7333 7689 -272 6 1362 21 0 0 0 chr3 101852723 101852744 -57747039 + AT_rich Low_complexity Low_complexity 1 21 0 6 1362 188 327 238 0 chr3 101852957 101853058 -57746725 + MER5A DNA MER1_type 63 187 -2 6 1362 201 316 82 21 chr3 101854012 101854109 -57745674 + MIRm SINE MIR 54 156 -120 7 1362 348 250 0 40 chr3 101854458 101854558 -57745225 + MER57-int LTR ERV1 7149 7244 -293 7 1362 243 0 0 0 chr3 101854801 101854828 -57744955 + (CA)n Simple_repeat Simple_repeat 1 27 0 7 1362 351 346 160 19 chr3 101855139 101855345 -57744438 - MER21B LTR ERV1 -531 332 98 7 1362 320 226 190 76 chr3 101855450 101855637 -57744146 + B2_Mm2 SINE B2 1 199 -17 7 1362 2216 190 38 8 chr3 101855711 101856108 -57743675 - MTD LTR MaLR -1 418 10 7 1362 225 0 0 0 chr3 101856108 101856133 -57743650 + (CA)n Simple_repeat Simple_repeat 2 26 0 7 1362 2414 26 2 313 chr3 101856497 101857063 -57742720 - RLTR10 LTR ERVK 0 390 1 7 1362 230 288 102 0 chr3 101857555 101857614 -57742169 + ID4 SINE ID 5 69 -14 7 1362 549 76 0 0 chr3 101857614 101857693 -57742090 + (CA)n Simple_repeat Simple_repeat 2 80 0 7 1362 381 100 48 36 chr3 101857709 101857792 -57741991 + (CAGAGA)n Simple_repeat Simple_repeat 2 85 0 7 1362 705 179 0 6 chr3 101857792 101858119 -57741664 + GA-rich Low_complexity Low_complexity 1 324 0 7 1362 617 215 218 11 chr3 101858476 101858650 -57741133 - B3 SINE B2 -6 210 1 7 1362 1661 36 0 0 chr3 101858685 101858878 -57740905 + B2_Mm1t SINE B2 1 193 0 7 1362 252 0 0 0 chr3 101860804 101860832 -57738951 + (TG)n Simple_repeat Simple_repeat 1 28 0 7 1362 525 32 0 0 chr3 101860832 101860894 -57738889 + (GA)n Simple_repeat Simple_repeat 1 63 0 7 1362 312 209 0 0 chr3 101860896 101860982 -57738801 + (TG)n Simple_repeat Simple_repeat 2 87 0 7 1362 341 295 37 37 chr3 101860989 101861151 -57738632 - RSINE1 SINE B4 0 165 4 7 1362 1876 191 44 30 chr3 101861924 101862329 -57737454 + MTD LTR MaLR 1 411 -8 7 1362 922 267 0 0 chr3 101862389 101862595 -57737188 + B3 SINE B2 1 206 -10 7 1362 577 236 19 69 chr3 101865019 101865074 -57734709 - B3A SINE B2 -3 213 154 7 1362 315 0 0 0 chr3 101865074 101865109 -57734674 + (CA)n Simple_repeat Simple_repeat 1 35 0 7 1362 577 243 23 62 chr3 101865109 101865266 -57734517 - B3A SINE B2 -44 154 1 7 1362 531 0 0 0 chr3 101865293 101865352 -57734431 + (TTTC)n Simple_repeat Simple_repeat 3 61 0 7 1362 658 286 0 0 chr3 101865352 101865482 -57734301 - ID_B1 SINE B4 -13 211 82 7 1362 200 339 88 102 chr3 101867197 101867480 -57732303 - L2b LINE L2 -35 3340 3062 7 1362 38 0 0 0 chr3 101867642 101867680 -57732103 + AT_rich Low_complexity Low_complexity 1 38 0 7 1362 3050 268 83 7 chr3 101867680 101868523 -57731260 + RCHARR1 DNA MER1_type 65 971 -3 7 1362 675 231 65 0 chr3 101868927 101869096 -57730687 - RCHARR1 DNA MER1_type -95 879 700 7 1362 567 29 0 0 chr3 101870205 101870274 -57729509 + (GGAA)n Simple_repeat Simple_repeat 2 70 0 7 1362 201 161 0 0 chr3 101870596 101870627 -57729156 + (TTCA)n Simple_repeat Simple_repeat 3 33 0 7 1362 435 319 77 15 chr3 101870701 101870975 -57728808 - L1MEc LINE L1 -1288 5031 4741 7 1362 320 241 23 11 chr3 101871009 101871097 -57728686 - RSINE1 SINE B4 -1 164 76 7 1362 2449 123 242 12 chr3 101871092 101871620 -57728163 - RLTR25A LTR ERVK -34 994 414 7 1362 536 205 45 19 chr3 101871686 101871840 -57727943 - L1MEc LINE L1 -1890 4429 4272 7 1362 538 226 37 25 chr3 101872364 101872527 -57727256 - L1MEc LINE L1 -5015 1385 1221 7 1362 581 199 6 18 chr3 101872564 101872728 -57727055 + CT-rich Low_complexity Low_complexity 1 162 0 7 1362 221 261 43 54 chr3 101873103 101873196 -57726587 + MIRb SINE MIR 85 176 -92 7 1362 444 289 111 89 chr3 101874013 101874203 -57725580 - MER20 DNA MER1_type -25 194 1 7 1362 199 370 51 22 chr3 101874439 101874577 -57725206 + MIR SINE MIR 25 166 -96 7 1362 566 264 8 8 chr3 101874813 101874935 -57724848 + MTEa LTR MaLR 28 149 -230 7 1362 605 211 39 39 chr3 101874998 101875151 -57724632 + MTEa LTR MaLR 158 310 -69 7 1362 876 64 34 34 chr3 101875241 101875420 -57724363 + (CAGA)n Simple_repeat Simple_repeat 2 180 0 7 1362 255 316 13 0 chr3 101875420 101875499 -57724284 + MTEa LTR MaLR 300 379 0 7 1362 198 103 0 0 chr3 101875660 101875689 -57724094 + (T)n Simple_repeat Simple_repeat 1 29 0 7 1362 1273 41 0 0 chr3 101875689 101875836 -57723947 - B1_Mm SINE Alu 0 147 1 7 1362 1383 213 71 23 chr3 101875967 101876318 -57723465 + ORR1D2 LTR MaLR 3 370 0 7 1362 1021 296 50 59 chr3 101876492 101876812 -57722971 + MLT1A0 LTR MaLR 48 364 -1 7 1362 761 219 56 52 chr3 101877017 101877287 -57722496 - RLTR15 LTR ERVK -39 320 50 7 1362 207 170 38 0 chr3 101877288 101877341 -57722442 + T-rich Low_complexity Low_complexity 4 58 0 7 1362 553 194 10 0 chr3 101877387 101877485 -57722298 + RSINE1 SINE B4 31 129 -36 7 1362 1087 168 39 19 chr3 101877613 101877819 -57721964 + B3 SINE B2 2 211 -5 7 1362 600 262 40 36 chr3 101878242 101878456 -57721327 + B3A SINE B2 2 216 0 7 1362 1099 88 0 39 chr3 101879707 101879860 -57719923 + B1_Mus2 SINE Alu 1 147 0 7 1362 369 292 48 60 chr3 101880071 101880255 -57719528 + L1MDa LINE L1 4211 4374 -2163 7 1362 234 312 76 7 chr3 101880344 101880489 -57719294 + L1MDa LINE L1 5180 5334 -1203 7 1362 445 333 99 59 chr3 101880553 101880958 -57718825 + L1ME1 LINE L1 5693 6113 -66 7 1362 689 288 0 0 chr3 101880995 101881155 -57718628 - RSINE1 SINE B4 -2 163 4 7 1362 895 189 81 5 chr3 101881195 101881330 -57718453 - ORR1D1 LTR MaLR 0 384 247 7 1362 210 71 0 0 chr3 101881330 101881358 -57718425 + (CAGG)n Simple_repeat Simple_repeat 3 30 0 7 1362 895 179 71 75 chr3 101881358 101881434 -57718349 - ORR1D1 LTR MaLR -138 246 166 7 1362 270 0 0 0 chr3 101881434 101881529 -57718254 + (CAGA)n Simple_repeat Simple_repeat 1 95 0 7 1362 991 141 49 38 chr3 101881529 101881713 -57718070 - ORR1D1 LTR MaLR -184 190 5 7 1362 256 266 63 21 chr3 101881797 101881939 -57717844 + Charlie21a DNA MER1_type 896 1043 -170 7 1362 540 242 56 56 chr3 101881944 101882106 -57717677 + RSINE1 SINE B4 3 164 -1 7 1362 198 0 0 0 chr3 101882128 101882150 -57717633 + (CAA)n Simple_repeat Simple_repeat 2 23 0 7 1362 412 206 0 11 chr3 101882231 101882329 -57717454 + B1_Mur3 SINE Alu 2 94 -55 7 1362 700 309 75 25 chr3 101882326 101882662 -57717121 + RLTR26 LTR ERVK 21 412 -215 7 1362 830 48 0 0 chr3 101882673 101882778 -57717005 - B1_Mus2 SINE Alu 0 147 43 7 1362 317 161 0 18 chr3 101882731 101882788 -57716995 - 4.5SRNA scRNA scRNA -8 86 31 7 1362 340 255 62 31 chr3 101883111 101883208 -57716575 + B1_Mur2 SINE Alu 50 149 0 7 1362 303 282 62 26 chr3 101883541 101883654 -57716129 - MLT1D LTR MaLR 0 505 389 7 1362 419 294 48 48 chr3 101883723 101883912 -57715871 - MLT1D LTR MaLR -296 209 21 7 1362 192 152 0 0 chr3 101884035 101884068 -57715715 + CT-rich Low_complexity Low_complexity 2 34 0 7 1362 1213 41 0 26 chr3 101884068 101884219 -57715564 - B1_Mus2 SINE Alu 0 147 1 7 1362 357 325 82 12 chr3 101884476 101884647 -57715136 + MIRb SINE MIR 66 248 -20 7 1362 2146 182 19 29 chr3 101884662 101885076 -57714707 + MTC LTR MaLR 4 413 -8 7 1362 232 194 125 69 chr3 101885118 101885190 -57714593 + MamSINE1 SINE tRNA 15 90 -200 7 1362 595 262 100 12 chr3 101885241 101885462 -57714321 + MIR SINE MIR 28 261 -1 7 1362 343 287 67 29 chr3 101886784 101886888 -57712895 - B1F2 SINE Alu -2 147 40 7 1362 238 146 36 24 chr3 101888644 101888728 -57711055 + (CACCC)n Simple_repeat Simple_repeat 4 88 0 7 1362 234 300 55 43 chr3 101889463 101889613 -57710170 - MIRm SINE MIR -111 165 18 7 1362 25 0 0 0 chr3 101890232 101890257 -57709526 + AT_rich Low_complexity Low_complexity 1 25 0 7 1362 249 109 0 0 chr3 101892978 101893024 -57706759 + (TA)n Simple_repeat Simple_repeat 1 46 0 7 1362 183 42 0 0 chr3 101893359 101893383 -57706400 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 7 1362 911 148 0 20 chr3 101893386 101893538 -57706245 - B1_Mur1 SINE Alu 0 149 1 7 1362 2014 132 12 59 chr3 101894477 101894815 -57704968 + ORR1A3 LTR MaLR 1 322 -4 7 1362 1720 206 21 45 chr3 101894922 101895303 -57704480 + ORR1D1 LTR MaLR 3 374 0 7 1362 315 290 0 0 chr3 101895805 101895874 -57703909 - RSINE1 SINE B4 -10 155 87 7 1362 23 0 0 0 chr3 101895921 101895944 -57703839 + AT_rich Low_complexity Low_complexity 1 23 0 7 1362 479 312 62 0 chr3 101895996 101896172 -57703611 - B3A SINE B2 -11 187 1 7 1362 210 118 0 0 chr3 101896186 101896220 -57703563 + (CTTG)n Simple_repeat Simple_repeat 2 35 0 7 1362 458 266 47 61 chr3 101896226 101896374 -57703409 - RSINE1 SINE B4 -8 157 12 7 1362 247 213 0 41 chr3 101896436 101896485 -57703298 + MER5B DNA MER1_type 130 176 -2 7 1362 429 279 81 0 chr3 101896529 101896640 -57703143 + MER5A1 DNA MER1_type 47 166 0 7 1362 213 168 25 131 chr3 101897146 101897345 -57702438 + (ATG)n Simple_repeat Simple_repeat 3 180 0 7 1362 241 184 27 96 chr3 101897359 101897546 -57702237 + (ATG)n Simple_repeat Simple_repeat 1 174 0 7 1362 2411 117 48 0 chr3 101897726 101898084 -57701699 - ORR1C1 LTR MaLR 0 378 4 7 1362 300 315 72 65 chr3 101898164 101898317 -57701466 - HAL1-3A_ME LINE L1 -421 2437 2284 7 1362 225 246 14 122 chr3 101898620 101898694 -57701089 - MIRb SINE MIR -164 104 39 7 1362 516 268 9 0 chr3 101898723 101898835 -57700948 + RSINE1 SINE B4 4 116 -49 7 1362 261 83 0 0 chr3 101899253 101899289 -57700494 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 7 1362 321 258 147 21 chr3 101899764 101899859 -57699924 + RSINE1 SINE B4 55 161 -4 7 1362 394 167 56 15 chr3 101901041 101901130 -57698653 - PB1 SINE Alu -6 121 28 7 1362 405 0 0 0 chr3 101901365 101901410 -57698373 + (TC)n Simple_repeat Simple_repeat 2 46 0 7 1362 189 0 0 0 chr3 101901410 101901430 -57698353 + (TG)n Simple_repeat Simple_repeat 2 22 0 7 1362 33 25 0 0 chr3 101901528 101901568 -57698215 + AT_rich Low_complexity Low_complexity 1 40 0 7 1362 233 258 97 0 chr3 101901568 101901630 -57698153 - ID4 SINE ID -14 69 2 7 1362 249 33 0 0 chr3 101901665 101901695 -57698088 + (TG)n Simple_repeat Simple_repeat 1 30 0 7 1362 348 253 130 68 chr3 101901873 101902034 -57697749 + MER5A DNA MER1_type 1 171 -18 7 1362 219 360 56 11 chr3 101902146 101902236 -57697547 - MIRc SINE MIR -137 131 38 8 1362 2063 159 38 0 chr3 101902265 101902611 -57697172 - RLTR15 LTR ERVK 0 359 1 8 1362 220 368 63 0 chr3 101902671 101902797 -57696986 + MIR SINE MIR 88 234 -34 8 1362 270 0 0 0 chr3 101902840 101902870 -57696913 + (TG)n Simple_repeat Simple_repeat 1 30 0 8 1362 450 0 0 0 chr3 101902870 101902919 -57696864 + (GA)n Simple_repeat Simple_repeat 1 50 0 8 1362 654 276 13 7 chr3 101902920 101903073 -57696710 - RSINE1 SINE B4 -10 155 2 8 1362 342 0 0 0 chr3 101904652 101904690 -57695093 + (TC)n Simple_repeat Simple_repeat 1 38 0 8 1362 374 0 22 0 chr3 101904690 101904735 -57695048 + (CA)n Simple_repeat Simple_repeat 1 47 0 8 1362 914 185 0 0 chr3 101904758 101904904 -57694879 - B1_Mus2 SINE Alu 0 147 2 8 1362 231 324 93 64 chr3 101905160 101905473 -57694310 - L2b LINE L2 -18 3357 3036 8 1362 464 278 0 0 chr3 101905835 101905932 -57693851 - MIRb SINE MIR -11 257 161 8 1362 405 58 0 0 chr3 101907420 101907472 -57692311 + (TC)n Simple_repeat Simple_repeat 1 52 0 8 1362 423 0 0 0 chr3 101907472 101907519 -57692264 + (TG)n Simple_repeat Simple_repeat 2 48 0 8 1362 493 281 7 49 chr3 101907571 101907713 -57692070 - RSINE1 SINE B4 -28 137 2 8 1362 268 214 18 0 chr3 101907943 101907999 -57691784 + MER5A1 DNA MER1_type 103 159 -7 7 1362 328 250 163 52 chr3 101908941 101909211 -57690572 + L1MD1 LINE L1 4156 4455 -1691 8 1362 448 244 0 0 chr3 101909211 101909301 -57690482 + ID_B1 SINE B4 81 170 -54 8 1362 372 22 0 0 chr3 101909313 101909358 -57690425 + (CAAAA)n Simple_repeat Simple_repeat 1 45 0 8 1362 1144 15 0 0 chr3 101909480 101909612 -57690171 + MTA_Mm LTR MaLR 1 132 -264 8 1362 639 63 0 0 chr3 101909607 101909686 -57690097 + MTA_Mm LTR MaLR 318 396 0 8 1362 9036 39 18 1 chr3 101909686 101910766 -57689017 + MTA_Mm-int LTR MaLR 1 1098 0 8 1362 3307 31 5 0 chr3 101910766 101911158 -57688625 + MTA_Mm LTR MaLR 1 394 -2 8 1362 212 173 0 37 chr3 101911185 101911239 -57688544 + (CATA)n Simple_repeat Simple_repeat 3 54 0 8 1362 417 289 88 74 chr3 101911274 101911766 -57688017 + L1MD1 LINE L1 4596 5094 -1052 8 1362 668 197 48 27 chr3 101911766 101911912 -57687871 + B1_Mur2 SINE Alu 1 149 0 8 1362 417 289 88 74 chr3 101911912 101911976 -57687807 + L1MD1 LINE L1 5095 5160 -986 8 1362 333 0 0 0 chr3 101912045 101912082 -57687701 + (TG)n Simple_repeat Simple_repeat 1 37 0 8 1362 432 0 0 0 chr3 101912082 101912129 -57687654 + (GA)n Simple_repeat Simple_repeat 1 48 0 8 1362 1621 273 86 63 chr3 101912154 101912707 -57687076 + L1MD1 LINE L1 5317 5888 -354 8 1362 3039 59 5 3 chr3 101912707 101913096 -57686687 + L1_Mus2 LINE L1 6177 6566 0 8 1362 1621 273 86 63 chr3 101913096 101913414 -57686369 + L1MD1 LINE L1 5889 6208 -34 8 1362 1720 21 0 0 chr3 101914363 101914555 -57685228 + B2_Mm1a SINE B2 2 193 0 8 1362 585 221 26 26 chr3 101917529 101917645 -57682138 + RSINE1 SINE B4 13 128 -37 8 1362 380 256 111 15 chr3 101917987 101918122 -57681661 + B1F1 SINE Alu 2 149 0 8 1362 2356 149 64 3 chr3 101918533 101918922 -57680861 - MTC LTR MaLR -8 413 1 8 1362 279 0 0 0 chr3 101919179 101919210 -57680573 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 8 1362 277 301 24 12 chr3 101919292 101919376 -57680407 - MTEb LTR MaLR -16 363 279 8 1362 259 290 79 10 chr3 101919572 101919673 -57680110 - MTEb LTR MaLR -248 111 4 8 1362 658 254 77 68 chr3 101919681 101920032 -57679751 + L1MA7 LINE L1 5915 6268 -23 8 1362 582 287 49 61 chr3 101920043 101920288 -57679495 + B4A SINE B4 49 290 -2 8 1362 233 329 45 71 chr3 101920535 101920689 -57679094 - RMER12 LTR ERVK -471 851 702 8 1362 472 168 0 16 chr3 101921127 101921254 -57678529 + (TG)n Simple_repeat Simple_repeat 2 126 0 8 1362 474 18 0 0 chr3 101921573 101921628 -57678155 + (TC)n Simple_repeat Simple_repeat 2 56 0 8 1362 204 257 0 0 chr3 101921628 101921698 -57678085 + (TG)n Simple_repeat Simple_repeat 2 71 0 8 1362 751 287 109 51 chr3 101921756 101922031 -57677752 - B4 SINE B4 0 292 2 8 1362 274 267 11 32 chr3 101922464 101922557 -57677226 - Lx8 LINE L1 -1 7472 7382 8 1362 248 86 0 0 chr3 101922565 101922600 -57677183 + Lx8 LINE L1 6772 6806 -667 8 1362 571 108 0 12 chr3 101922608 101922692 -57677091 + B1_Mus1 SINE Alu 25 107 -41 8 1362 801 287 90 54 chr3 101922975 101923307 -57676476 - RLTR26 LTR ERVK -251 391 48 8 1362 180 97 0 0 chr3 101924234 101924265 -57675518 + (G)n Simple_repeat Simple_repeat 1 31 0 8 1362 333 0 0 0 chr3 101924429 101924466 -57675317 + (TG)n Simple_repeat Simple_repeat 1 37 0 8 1362 642 153 368 0 chr3 101924664 101924827 -57674956 + ID_B1 SINE B4 2 224 0 8 1362 937 237 0 0 chr3 101924885 101925058 -57674725 + B3 SINE B2 1 173 -43 8 1362 2542 71 16 0 chr3 101925070 101925392 -57674391 + ORR1A2 LTR MaLR 1 327 0 8 1362 369 302 30 32 chr3 101925402 101925663 -57674120 + L1MA4 LINE L1 5767 6023 -280 8 1362 207 0 0 0 chr3 101926313 101926336 -57673447 + (A)n Simple_repeat Simple_repeat 1 23 0 8 1362 240 59 0 0 chr3 101926729 101926763 -57673020 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 8 1362 1231 41 7 0 chr3 101926782 101926927 -57672856 - B1_Mm SINE Alu -1 146 1 8 1362 644 269 18 24 chr3 101926955 101927119 -57672664 + RSINE1 SINE B4 3 165 0 8 1362 650 251 54 38 chr3 101927259 101927299 -57672484 - B3A SINE B2 -4 194 156 8 1362 314 23 23 0 chr3 101927299 101927342 -57672441 + (GA)n Simple_repeat Simple_repeat 1 44 0 8 1362 650 251 54 38 chr3 101927342 101927487 -57672296 - B3A SINE B2 -43 155 6 8 1362 279 0 0 0 chr3 101928104 101928135 -57671648 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 8 1362 374 102 0 14 chr3 101929036 101929106 -57670677 + (TCTCCC)n Simple_repeat Simple_repeat 3 71 0 8 1362 211 191 99 113 chr3 101929106 101929177 -57670606 - ID4_ SINE ID -12 71 2 8 1362 329 308 103 22 chr3 101929186 101929322 -57670461 - B1F SINE Alu -1 148 2 8 1362 353 312 0 0 chr3 101929812 101929905 -57669878 + MER81 DNA AcHobo 1 93 -21 8 1362 528 296 62 38 chr3 101931073 101931284 -57668499 - MER58A DNA MER1_type 0 224 9 8 1362 202 335 95 58 chr3 101932155 101932345 -57667438 + MIRc SINE MIR 7 206 -62 8 1362 230 338 70 99 chr3 101932565 101932736 -57667047 - MIRc SINE MIR -84 184 19 8 1362 484 244 50 50 chr3 101932797 101932844 -57666939 - RSINE1 SINE B4 -43 122 77 8 1362 3358 38 2 8 chr3 101932844 101933242 -57666541 - MTA_Mm LTR MaLR 0 396 1 8 1362 484 244 50 50 chr3 101933242 101933315 -57666468 - RSINE1 SINE B4 -89 76 2 8 1362 359 309 42 28 chr3 101933737 101933880 -57665903 + RSINE1 SINE B4 2 146 -19 8 1362 189 107 0 0 chr3 101933903 101933931 -57665852 + (CAA)n Simple_repeat Simple_repeat 3 30 0 8 1362 233 320 27 0 chr3 101934148 101934223 -57665560 + MLT1A0 LTR MaLR 1 77 -297 8 1362 351 254 172 0 chr3 101934312 101934434 -57665349 + B1F SINE Alu 1 143 -6 8 1362 252 0 0 0 chr3 101934435 101934463 -57665320 + (GA)n Simple_repeat Simple_repeat 2 29 0 8 1362 277 198 95 95 chr3 101934478 101934573 -57665210 + MLT1A0 LTR MaLR 236 330 -35 8 1362 587 199 6 37 chr3 101934931 101935074 -57664709 + B1_Mur1 SINE Alu 1 149 0 8 1362 275 177 0 16 chr3 101935142 101935205 -57664578 + A-rich Low_complexity Low_complexity 4 65 0 8 1362 21 36 0 0 chr3 101935860 101935888 -57663895 + AT_rich Low_complexity Low_complexity 1 28 0 8 1362 582 234 148 6 chr3 101936377 101936553 -57663230 + B3 SINE B2 2 202 -14 8 1362 324 143 0 0 chr3 101937691 101937747 -57662036 + (TATG)n Simple_repeat Simple_repeat 2 57 0 8 1362 751 247 71 6 chr3 101938433 101938616 -57661167 + ID_B1 SINE B4 29 223 -1 8 1362 180 111 0 0 chr3 101938673 101938700 -57661083 + (CAA)n Simple_repeat Simple_repeat 1 27 0 8 1362 368 189 232 0 chr3 101939053 101939148 -57660635 - L1MB5 LINE L1 -193 5981 5865 8 1362 203 148 60 36 chr3 101939148 101939232 -57660551 + (TA)n Simple_repeat Simple_repeat 2 87 0 8 1362 198 0 0 0 chr3 101941419 101941441 -57658342 + (A)n Simple_repeat Simple_repeat 1 22 0 8 1362 500 261 21 84 chr3 101943406 101943548 -57656235 + RSINE1 SINE B4 2 134 -31 8 1362 225 138 147 44 chr3 101944773 101944841 -57654942 - MamGypLTR2b LTR Gypsy -17 905 831 8 1362 423 152 0 0 chr3 101945284 101945363 -57654420 + (CA)n Simple_repeat Simple_repeat 2 80 0 8 1362 186 226 161 0 chr3 101946973 101947035 -57652748 - MIR SINE MIR -67 195 124 8 1362 573 186 0 0 chr3 101949220 101949349 -57650434 + (ATG)n Simple_repeat Simple_repeat 3 131 0 8 1362 329 279 86 122 chr3 101950119 101950364 -57649419 + Tigger14a DNA MER2_type 4 239 -85 8 1362 372 277 119 52 chr3 101950818 101951012 -57648771 + L2c LINE L2 3177 3383 -4 8 1362 364 288 51 111 chr3 101951107 101951341 -57648442 - ORR1E LTR MaLR -22 337 118 8 1362 429 211 37 37 chr3 101951401 101951509 -57648274 - MLT1A1 LTR MaLR -300 108 1 8 1362 261 384 64 57 chr3 101951509 101951639 -57648144 - MLT1B LTR MaLR -29 361 224 8 1362 180 0 0 0 chr3 101951639 101951659 -57648124 + (CAGA)n Simple_repeat Simple_repeat 1 20 0 8 1362 261 384 64 57 chr3 101951659 101951814 -57647969 - MLT1B LTR MaLR -167 223 74 8 1362 304 314 99 37 chr3 101952178 101952340 -57647443 - MIRb SINE MIR -8 260 89 8 1362 225 182 0 0 chr3 101954362 101954417 -57645366 + T-rich Low_complexity Low_complexity 1 55 0 8 1362 1293 153 13 26 chr3 101955686 101955914 -57643869 + URR1B DNA MER1_type 1 225 0 8 1362 441 95 0 0 chr3 101957199 101957262 -57642521 + (TTCCC)n Simple_repeat Simple_repeat 5 67 0 8 1362 222 37 0 0 chr3 101957385 101957412 -57642371 + (T)n Simple_repeat Simple_repeat 1 27 0 8 1362 2470 160 22 2 chr3 101958297 101958704 -57641079 + MTC LTR MaLR 1 415 -6 8 1362 1015 48 0 0 chr3 101958862 101958986 -57640797 + B1_Mm SINE Alu 18 141 -6 8 1362 339 25 0 0 chr3 101958988 101959028 -57640755 + (GAAAA)n Simple_repeat Simple_repeat 2 41 0 8 1362 471 255 63 34 chr3 101959118 101959310 -57640473 + RMER4B LTR ERVK 316 574 -11 8 1362 207 0 0 0 chr3 101960485 101960508 -57639275 + (TG)n Simple_repeat Simple_repeat 2 24 0 8 1362 201 39 0 0 chr3 101962097 101962123 -57637660 + (TA)n Simple_repeat Simple_repeat 2 27 0 8 1362 225 203 16 48 chr3 101962812 101962874 -57636909 + MIRc SINE MIR 66 125 -143 8 1362 183 333 16 32 chr3 101963212 101963274 -57636509 + L2c LINE L2 3256 3316 -71 9 1362 366 329 61 31 chr3 101963430 101963593 -57636190 - MER58A DNA MER1_type -44 180 13 9 1362 183 42 0 0 chr3 101963898 101963922 -57635861 + (TCTCTG)n Simple_repeat Simple_repeat 1 24 0 9 1362 607 221 92 26 chr3 101963923 101964076 -57635707 - RSINE1 SINE B4 -1 164 2 9 1362 516 262 27 20 chr3 101964126 101964274 -57635509 - B1F SINE Alu 0 149 1 9 1362 678 268 76 24 chr3 101964654 101964864 -57634919 - MER2 DNA MER2_type -28 317 97 9 1362 220 279 122 75 chr3 101965195 101965342 -57634441 - MIRb SINE MIR -59 209 56 9 1362 340 233 65 81 chr3 101965563 101965723 -57634060 - MIRm SINE MIR -102 160 9 9 1362 6668 45 11 4 chr3 101965861 101966663 -57633120 + RLTR13C2 LTR ERVK 1 808 0 9 1362 595 211 191 21 chr3 101966714 101966908 -57632875 + B4A SINE B4 2 228 -64 9 1362 707 258 22 38 chr3 101966910 101967095 -57632688 + B3A SINE B2 2 183 -15 9 1362 3326 104 0 29 chr3 101967744 101968230 -57631553 + Lx LINE L1 6171 6642 -12 9 1362 436 205 127 8 chr3 101968315 101968433 -57631350 + ID_B1 SINE B4 2 133 -91 9 1362 468 316 45 13 chr3 101968448 101968602 -57631181 + RSINE1 SINE B4 5 163 -2 9 1362 258 220 0 0 chr3 101968605 101968664 -57631119 + (CA)n Simple_repeat Simple_repeat 2 60 0 9 1362 320 214 0 0 chr3 101968689 101968745 -57631038 + ID_B1 SINE B4 143 198 -26 9 1362 365 123 0 15 chr3 101968745 101968811 -57630972 + (GAAAA)n Simple_repeat Simple_repeat 2 66 0 9 1362 196 349 38 70 chr3 101968973 101969130 -57630653 + MER5A DNA MER1_type 32 183 -6 9 1362 23 0 0 0 chr3 101969200 101969223 -57630560 + AT_rich Low_complexity Low_complexity 1 23 0 9 1362 25 0 0 0 chr3 101970070 101970095 -57629688 + AT_rich Low_complexity Low_complexity 1 25 0 9 1362 525 32 0 0 chr3 101971280 101971343 -57628440 + (CA)n Simple_repeat Simple_repeat 2 64 0 9 1362 522 0 0 0 chr3 101971343 101971400 -57628383 + (GA)n Simple_repeat Simple_repeat 2 59 0 9 1362 23 0 0 0 chr3 101972556 101972579 -57627204 + AT_rich Low_complexity Low_complexity 1 23 0 9 1362 665 225 145 21 chr3 101972617 101972803 -57626980 + B3 SINE B2 8 216 0 9 1363 432 0 0 0 chr3 101974591 101974639 -57625144 + (GA)n Simple_repeat Simple_repeat 1 48 0 9 1363 226 314 208 30 chr3 101975364 101975561 -57624222 + MIRc SINE MIR 17 248 -20 9 1363 378 348 59 69 chr3 101975678 101976063 -57623720 + ORR1E LTR MaLR 1 370 0 9 1363 1935 176 11 0 chr3 101977248 101977601 -57622182 + RLTR15 LTR ERVK 1 357 -2 9 1363 337 246 0 0 chr3 101977603 101977672 -57622111 + MTEb LTR MaLR 311 379 0 9 1363 995 114 6 0 chr3 101979567 101979733 -57620050 + (CA)n Simple_repeat Simple_repeat 1 167 0 9 1363 635 300 84 60 chr3 101980578 101980911 -57618872 - MLT1A LTR MaLR -20 354 14 9 1363 1562 213 131 21 chr3 101981168 101981206 -57618577 + RLTR11A2 LTR ERVK 1 51 -476 9 1363 180 0 0 0 chr3 101981206 101981226 -57618557 + (CACCC)n Simple_repeat Simple_repeat 3 22 0 9 1363 1562 213 131 21 chr3 101981226 101981662 -57618121 + RLTR11A2 LTR ERVK 52 526 -1 9 1363 1273 159 27 5 chr3 101981860 101982081 -57617702 - URR1A DNA MER1_type 0 226 1 9 1363 1437 281 90 29 chr3 101982100 101982758 -57617025 + MTE2b LTR MaLR 58 537 -12 9 1363 358 325 128 0 chr3 101983035 101983223 -57616560 + MIR SINE MIR 16 227 -35 9 1363 1586 173 88 51 chr3 101985511 101985864 -57613919 - ORR1D1 LTR MaLR -8 366 1 9 1363 216 349 11 11 chr3 101985909 101985996 -57613787 - L2c LINE L2 -33 3354 3268 9 1363 184 313 145 0 chr3 101986096 101986179 -57613604 + MIRm SINE MIR 82 176 -100 9 1363 938 47 156 8 chr3 101986329 101986457 -57613326 - B1_Mm SINE Alu 0 147 1 9 1363 198 0 0 0 chr3 101986558 101986580 -57613203 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 9 1363 723 173 15 15 chr3 101986580 101986707 -57613076 - B1_Mur4 SINE Alu -11 139 11 9 1363 354 252 27 103 chr3 101986596 101986740 -57613043 - MT2B LTR ERVL -323 278 146 9 1363 230 175 56 113 chr3 101986740 101986811 -57612972 - BLACKJACK DNA AcHobo 0 2944 2878 9 1363 228 205 49 49 chr3 101987001 101987124 -57612659 - Lx9 LINE L1 -64 7580 7458 9 1363 233 243 0 14 chr3 101987124 101987195 -57612588 + (TA)n Simple_repeat Simple_repeat 1 70 0 9 1363 235 281 184 0 chr3 101987214 101987328 -57612455 - L1M2 LINE L1 -383 5917 5783 9 1363 194 91 30 0 chr3 101987329 101987362 -57612421 + (TA)n Simple_repeat Simple_repeat 1 34 0 9 1363 350 191 0 33 chr3 101987368 101987466 -57612317 - L1M2 LINE L1 -396 5793 5703 9 1363 285 250 11 33 chr3 101989485 101989576 -57610207 + Lx9 LINE L1 5888 5976 -1668 9 1363 257 266 101 0 chr3 101989664 101989773 -57610010 + Lx8 LINE L1 6143 6262 -1211 9 1363 2424 259 104 16 chr3 101989790 101990480 -57609303 + Lx8 LINE L1 6364 7114 -359 9 1363 665 108 9 1 chr3 101990502 101990610 -57609173 - B2_Mm1t SINE B2 -109 107 1 9 1363 1064 299 75 29 chr3 101990746 101991238 -57608545 + L1ME2z LINE L1 5512 6026 -418 9 1363 377 39 20 0 chr3 101991964 101992015 -57607768 + (TCCA)n Simple_repeat Simple_repeat 3 54 0 9 1363 311 270 137 33 chr3 101992816 101992969 -57606814 - L1M2 LINE L1 -2853 3290 3122 9 1363 462 298 92 22 chr3 101995019 101995204 -57604579 - MIR SINE MIR -63 199 2 9 1363 192 242 28 70 chr3 101996127 101996198 -57603585 + MER5B DNA MER1_type 92 159 -19 9 1363 678 209 144 6 chr3 101996380 101996553 -57603230 + B3A SINE B2 1 197 -1 9 1363 562 202 19 9 chr3 101996871 101996976 -57602807 + ID_B1 SINE B4 7 112 -112 9 1363 250 302 0 11 chr3 101997598 101997685 -57602098 + C-rich Low_complexity Low_complexity 2 87 0 9 1363 242 240 199 15 chr3 101997816 101997947 -57601836 + MIRb SINE MIR 31 185 -83 9 1363 641 158 22 86 chr3 101999370 101999509 -57600274 - B1_Mur1 SINE Alu 0 149 20 9 1363 194 333 35 88 chr3 102003010 102003181 -57596602 + MIRb SINE MIR 70 231 -37 1 1363 219 368 178 25 chr3 102004622 102004937 -57594846 + L2c LINE L2 3020 3382 -5 2 1363 686 96 10 0 chr3 102004939 102005043 -57594740 + (GAAA)n Simple_repeat Simple_repeat 1 105 0 3 1363 306 194 0 0 chr3 102005453 102005515 -57594268 + (CACG)n Simple_repeat Simple_repeat 1 62 0 4 1363 387 0 0 0 chr3 102006619 102006662 -57593121 + (TG)n Simple_repeat Simple_repeat 2 44 0 5 1363 25 0 0 0 chr3 102008394 102008419 -57591364 + GC_rich Low_complexity Low_complexity 1 25 0 6 1363 486 0 0 0 chr3 102008691 102008745 -57591038 + (CA)n Simple_repeat Simple_repeat 2 55 0 7 1363 414 0 0 0 chr3 102008818 102008864 -57590919 + (CA)n Simple_repeat Simple_repeat 2 47 0 8 1363 198 103 0 0 chr3 102009002 102009031 -57590752 + (CA)n Simple_repeat Simple_repeat 1 29 0 9 1363 265 316 47 87 chr3 102010354 102010503 -57589280 + LTR79 LTR ERVL 385 527 0 1 1363 3058 134 92 61 chr3 102010625 102011182 -57588601 - RMER15 LTR ERVL -1 574 1 1 1363 524 228 25 42 chr3 102011281 102011400 -57588383 - PB1D10 SINE Alu 0 117 1 1 1363 542 200 30 0 chr3 102011459 102011559 -57588224 + B3 SINE B2 2 104 -112 1 1363 486 0 0 0 chr3 102011668 102011722 -57588061 + (TG)n Simple_repeat Simple_repeat 1 54 0 1 1363 410 262 200 28 chr3 102011742 102011887 -57587896 - B3A SINE B2 -28 170 1 1 1363 213 121 0 0 chr3 102012111 102012144 -57587639 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 1 1363 542 200 30 0 chr3 102012210 102012310 -57587473 - B3 SINE B2 -112 104 2 1 1363 400 248 35 31 chr3 102012433 102012553 -57587230 - PB1D10 SINE Alu -25 124 7 1 1363 414 247 0 22 chr3 102012468 102012559 -57587224 - ID_B1 SINE B4 -54 170 82 1 1363 253 260 0 14 chr3 102012668 102012742 -57587041 + Tigger15a DNA TcMar 546 618 -97 2 1363 993 214 135 8 chr3 102013168 102013413 -57586370 + B4A SINE B4 5 280 -12 2 1363 613 297 92 56 chr3 102013498 102013897 -57585886 + Tigger5 DNA MER2_type 2176 2405 -1 2 1363 361 307 69 0 chr3 102013961 102014062 -57585721 - L2a LINE L2 -4 3422 3315 2 1363 1031 146 31 174 chr3 102014184 102014359 -57585424 - URR1B DNA MER1_type 0 225 93 2 1363 1049 82 0 115 chr3 102014359 102014524 -57585259 - B1_Mus1 SINE Alu -1 147 2 2 1363 1031 146 31 174 chr3 102014524 102014606 -57585177 - URR1B DNA MER1_type -133 92 5 2 1363 1872 207 63 26 chr3 102015047 102015460 -57584323 + MTD LTR MaLR 7 393 -26 2 1363 378 57 0 0 chr3 102015521 102015574 -57584209 + (TC)n Simple_repeat Simple_repeat 2 54 0 2 1363 216 97 0 0 chr3 102015580 102015611 -57584172 + (TCCA)n Simple_repeat Simple_repeat 3 33 0 2 1363 180 0 0 0 chr3 102015622 102015642 -57584141 + (TG)n Simple_repeat Simple_repeat 1 20 0 2 1363 357 24 0 0 chr3 102015642 102015683 -57584100 + (GA)n Simple_repeat Simple_repeat 1 42 0 3 1363 817 236 0 12 chr3 102015688 102015851 -57583932 - B3A SINE B2 -36 162 2 3 1363 769 214 124 5 chr3 102015873 102016066 -57583717 + B3 SINE B2 1 216 0 3 1363 229 186 70 0 chr3 102016663 102016706 -57583077 - ID4 SINE ID -29 54 9 3 1363 893 269 119 4 chr3 102016737 102017033 -57582750 - MTEb LTR MaLR -54 325 3 3 1363 212 0 36 0 chr3 102017442 102017470 -57582313 + (TGGGGG)n Simple_repeat Simple_repeat 2 30 0 3 1363 351 0 0 0 chr3 102017840 102017879 -57581904 + (TC)n Simple_repeat Simple_repeat 2 40 0 3 1363 764 168 107 0 chr3 102017890 102018021 -57581762 - B1_Mus1 SINE Alu -1 147 3 3 1363 445 275 140 7 chr3 102018062 102018085 -57581698 - B3 SINE B2 0 216 195 3 1363 339 25 0 0 chr3 102018085 102018125 -57581658 + (TG)n Simple_repeat Simple_repeat 1 40 0 3 1363 445 275 140 7 chr3 102018125 102018251 -57581532 - B3 SINE B2 -22 194 48 3 1363 603 276 68 63 chr3 102018328 102018533 -57581250 + MER74A LTR ERVL 176 381 -177 4 1363 299 347 40 51 chr3 102018563 102018659 -57581124 + L1MEc LINE L1 134 232 -6168 4 1363 1071 169 63 63 chr3 102018659 102018880 -57580903 - URR1B DNA MER1_type 0 225 5 4 1363 299 347 40 51 chr3 102018880 102018959 -57580824 + L1MEc LINE L1 233 307 -6093 4 1363 302 328 53 0 chr3 102019088 102019219 -57580564 + L1MEc LINE L1 496 633 -5767 4 1363 216 0 0 0 chr3 102019221 102019245 -57580538 + (A)n Simple_repeat Simple_repeat 1 24 0 4 1363 297 167 0 0 chr3 102019540 102019594 -57580189 + CT-rich Low_complexity Low_complexity 1 54 0 4 1363 255 311 61 22 chr3 102019707 102019888 -57579895 + L1MEc LINE L1 730 917 -5483 4 1363 308 294 157 29 chr3 102020051 102020191 -57579592 - L1MEc LINE L1 -5214 1186 1029 4 1363 618 229 86 0 chr3 102020242 102020382 -57579401 - B3A SINE B2 -44 154 3 4 1363 351 314 118 82 chr3 102020404 102020744 -57579039 + ORR1E LTR MaLR 8 359 0 4 1363 890 196 10 16 chr3 102020756 102020948 -57578835 - B2_Mm2 SINE B2 -2 193 3 4 1363 830 232 51 46 chr3 102021016 102021226 -57578557 + ID_B1 SINE B4 1 213 -11 4 1363 266 50 0 24 chr3 102021226 102021267 -57578516 + (CAAA)n Simple_repeat Simple_repeat 2 41 0 5 1363 444 302 50 77 chr3 102021354 102021713 -57578070 - L1MEc LINE L1 -5264 1136 746 4 1363 939 235 29 0 chr3 102021714 102021918 -57577865 + B3 SINE B2 2 211 -5 5 1363 339 25 0 0 chr3 102021959 102021999 -57577784 + (TG)n Simple_repeat Simple_repeat 1 40 0 5 1363 486 0 0 0 chr3 102021999 102022052 -57577731 + (GA)n Simple_repeat Simple_repeat 1 54 0 5 1363 364 287 155 63 chr3 102022106 102022405 -57577378 - ORR1E LTR MaLR -2 377 27 5 1363 607 257 83 49 chr3 102022551 102022817 -57576966 - L1MEc LINE L1 -6117 283 9 4 1363 29 0 0 0 chr3 102022821 102022850 -57576933 + AT_rich Low_complexity Low_complexity 1 29 0 5 1363 543 223 194 48 chr3 102023017 102023397 -57576386 + RLTR12B LTR ERVK 11 464 -104 5 1363 499 312 63 35 chr3 102023644 102024001 -57575782 - L1MCc LINE L1 -4579 2458 2123 5 1363 207 0 0 0 chr3 102024001 102024024 -57575759 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 5 1363 499 335 80 33 chr3 102024024 102024323 -57575460 - L1MCc LINE L1 -4915 2122 1794 5 1363 324 319 8 40 chr3 102024437 102024561 -57575222 - L1MCc LINE L1 -4974 1449 1330 5 1363 1040 47 0 0 chr3 102024564 102024692 -57575091 - B1_Mus2 SINE Alu 0 147 20 5 1363 620 329 88 43 chr3 102024830 102025135 -57574648 - MER70B LTR ERVL -146 432 114 6 1363 509 248 9 0 chr3 102025775 102025880 -57573903 + ORR1E LTR MaLR 1 106 -253 6 1363 578 319 102 18 chr3 102026103 102026445 -57573338 - L1MCc LINE L1 -6026 397 27 5 1363 2283 189 98 13 chr3 102027188 102027665 -57572118 - RLTR11A2 LTR ERVK 0 527 10 6 1363 378 282 41 49 chr3 102028168 102028291 -57571492 - B3A SINE B2 -56 142 21 6 1363 813 330 52 83 chr3 102029870 102030055 -57569728 + MLT2B2 LTR ERVL 1 189 -326 6 1363 867 70 0 0 chr3 102030055 102030170 -57569613 + (GAAA)n Simple_repeat Simple_repeat 3 117 0 6 1363 813 330 52 83 chr3 102030170 102030503 -57569280 + MLT2B2 LTR ERVL 190 503 -12 6 1363 426 290 128 77 chr3 102030890 102031163 -57568620 + B4A SINE B4 2 288 -4 6 1363 602 239 97 12 chr3 102032599 102032764 -57567019 + B3A SINE B2 1 179 -19 6 1363 545 14 29 0 chr3 102032816 102032885 -57566898 + (TTTC)n Simple_repeat Simple_repeat 2 72 0 6 1363 1421 86 16 5 chr3 102032885 102033063 -57566720 - B2_Mm2 SINE B2 -13 182 2 6 1363 1053 89 0 40 chr3 102033112 102033264 -57566519 + B1_Mm SINE Alu 1 146 -1 7 1363 315 49 0 0 chr3 102033323 102033364 -57566419 + (TA)n Simple_repeat Simple_repeat 1 41 0 7 1363 1621 157 179 19 chr3 102034813 102035138 -57564645 + ORR1C1 LTR MaLR 1 377 -1 7 1363 780 262 0 0 chr3 102036610 102036755 -57563028 + B3A SINE B2 4 148 -50 7 1363 372 43 0 0 chr3 102036755 102036801 -57562982 + (CA)n Simple_repeat Simple_repeat 1 46 0 7 1363 618 148 0 19 chr3 102036805 102036908 -57562875 - ORR1B1 LTR MaLR -253 141 41 7 1363 339 164 0 0 chr3 102037240 102037301 -57562482 + (CA)n Simple_repeat Simple_repeat 2 62 0 7 1363 201 74 0 0 chr3 102037694 102037721 -57562062 + (TG)n Simple_repeat Simple_repeat 2 28 0 7 1363 222 37 0 0 chr3 102037828 102037855 -57561928 + (TTAA)n Simple_repeat Simple_repeat 2 28 0 7 1363 555 256 140 11 chr3 102037856 102038042 -57561741 - B3 SINE B2 -6 210 1 7 1363 233 273 138 38 chr3 102038042 102038122 -57561661 - RSINE1 SINE B4 -74 91 4 8 1363 192 40 0 0 chr3 102038162 102038187 -57561596 + (CATA)n Simple_repeat Simple_repeat 4 28 0 8 1363 206 109 0 42 chr3 102038270 102038318 -57561465 + (TTTG)n Simple_repeat Simple_repeat 3 48 0 8 1363 216 158 0 0 chr3 102038316 102038354 -57561429 + CT-rich Low_complexity Low_complexity 3 40 0 8 1363 837 168 0 21 chr3 102038355 102038495 -57561288 - B1_Mus2 SINE Alu 0 147 11 8 1363 1863 135 19 35 chr3 102038676 102038990 -57560793 - RLTR27 LTR ERVK 0 309 1 8 1363 1684 211 50 20 chr3 102038990 102039547 -57560236 - MMERVK10C-int LTR ERVK 0 7581 6907 8 1363 1054 259 36 45 chr3 102039760 102040116 -57559667 - MMERVK10C-int LTR ERVK -2099 5482 5130 8 1363 8321 68 0 6 chr3 102040126 102041178 -57558605 - MMERVK10C-int LTR ERVK -3704 3877 2832 8 1363 569 55 0 0 chr3 102041176 102041249 -57558534 - MMERVK10C-int LTR ERVK -4957 2624 2552 8 1363 449 94 47 12 chr3 102041232 102041318 -57558465 - MMERVK10C-int LTR ERVK -5608 1973 1885 8 1363 382 185 123 0 chr3 102041309 102041390 -57558393 - MMERVK10C-int LTR ERVK -5109 1028 938 8 1363 1201 186 138 56 chr3 102041377 102041792 -57557991 - MMERVK10C-int LTR ERVK -4795 611 312 8 1363 1326 124 206 6 chr3 102041880 102042211 -57557572 - RLTR10-int LTR ERVK -6629 952 566 8 1363 474 186 0 53 chr3 102042211 102042381 -57557402 + T-rich Low_complexity Low_complexity 2 162 0 8 1363 403 130 72 0 chr3 102042402 102042471 -57557312 - RLTR10-int LTR ERVK -7300 281 208 8 1363 1840 157 13 29 chr3 102042494 102042808 -57556975 - RLTR27 LTR ERVK 0 309 1 8 1363 532 238 9 0 chr3 102043226 102043331 -57556452 + B3 SINE B2 2 107 -109 8 1363 530 295 25 29 chr3 102043449 102043756 -57556027 - L1M2 LINE L1 -469 5411 5106 9 1363 945 295 110 31 chr3 102043780 102044288 -57555495 + L1MA4A LINE L1 5438 5985 -171 9 1363 1074 231 8 58 chr3 102045735 102045978 -57553805 + MTD LTR MaLR 12 242 -177 9 1363 487 209 183 0 chr3 102047341 102047456 -57552327 - ID_B1 SINE B4 -4 220 85 9 1363 393 308 187 41 chr3 102047763 102048072 -57551711 - L1MEe LINE L1 -2703 3443 3090 9 1363 884 177 7 13 chr3 102048072 102048221 -57551562 - B1_Mur3 SINE Alu -1 148 1 9 1363 393 308 187 41 chr3 102048221 102048274 -57551509 - L1MEe LINE L1 -3057 3089 3028 9 1363 376 238 12 0 chr3 102048457 102048541 -57551242 + PB1D7 SINE Alu 24 108 -12 9 1363 432 329 66 0 chr3 102048753 102048905 -57550878 - LTR16D2 LTR ERVL -249 323 162 9 1363 4024 185 131 63 chr3 102049310 102050565 -57549218 + RMER1A Other Other 1 853 -177 9 1363 900 67 0 0 chr3 102050565 102050685 -57549098 + (TTTC)n Simple_repeat Simple_repeat 1 120 0 9 1363 1391 80 17 0 chr3 102050685 102050861 -57548922 - B2_Mm2 SINE B2 -15 180 2 1 1363 4024 167 213 29 chr3 102050861 102050909 -57548874 + RMER1A Other Other 854 911 -119 9 1363 216 0 0 0 chr3 102050909 102050933 -57548850 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 1 1363 4024 167 213 29 chr3 102050933 102051039 -57548744 + RMER1A Other Other 912 1014 -16 9 1363 276 268 40 8 chr3 102051345 102051469 -57548314 - L1MEe LINE L1 -3736 2430 2303 9 1363 324 0 0 0 chr3 102051493 102051529 -57548254 + (TG)n Simple_repeat Simple_repeat 1 36 0 1 1363 455 271 0 38 chr3 102051544 102051679 -57548104 - RSINE1 SINE B4 -14 151 24 1 1363 243 0 0 0 chr3 102051741 102051768 -57548015 + (CAAA)n Simple_repeat Simple_repeat 1 27 0 1 1363 378 100 0 0 chr3 102051967 102052027 -57547756 + (TC)n Simple_repeat Simple_repeat 2 61 0 1 1363 835 196 0 13 chr3 102052175 102052325 -57547458 - B1_Mus1 SINE Alu 0 148 1 1 1363 456 104 0 0 chr3 102052841 102052908 -57546875 + (GA)n Simple_repeat Simple_repeat 2 68 0 1 1363 237 238 84 36 chr3 102052912 102052995 -57546788 + MLT2B1 LTR ERVL 481 567 0 1 1363 327 260 0 9 chr3 102053253 102053327 -57546456 + ID2 SINE ID 5 74 -78 1 1363 1285 163 184 44 chr3 102053919 102054240 -57545543 + ORR1D2 LTR MaLR 5 370 0 1 1363 775 259 80 10 chr3 102054595 102054794 -57544989 - B3 SINE B2 -3 213 1 1 1363 328 292 70 17 chr3 102055142 102055257 -57544526 - MLT1A1 LTR MaLR -12 396 276 1 1363 221 0 35 0 chr3 102055741 102055770 -57544013 + (CAA)n Simple_repeat Simple_repeat 2 31 0 1 1363 491 244 166 41 chr3 102055850 102056143 -57543640 - MTEa LTR MaLR -24 355 1 1 1363 244 241 37 0 chr3 102056347 102056401 -57543382 + MADE2 DNA Mariner 16 71 -9 1 1363 229 204 0 0 chr3 102056745 102056799 -57542984 + A-rich Low_complexity Low_complexity 1 54 0 1 1363 203 86 57 0 chr3 102056989 102057024 -57542759 + (CACAC)n Simple_repeat Simple_repeat 1 37 0 1 1363 250 260 211 35 chr3 102057866 102058022 -57541761 - MIRb SINE MIR 0 262 73 1 1363 330 169 0 0 chr3 102058953 102059018 -57540765 + CT-rich Low_complexity Low_complexity 1 65 0 1 1363 737 107 0 8 chr3 102059039 102059171 -57540612 + (CA)n Simple_repeat Simple_repeat 2 132 0 1 1363 468 0 0 0 chr3 102059171 102059222 -57540561 + (GA)n Simple_repeat Simple_repeat 2 53 0 1 1363 616 189 54 0 chr3 102059222 102059333 -57540450 - B1F1 SINE Alu -10 139 23 1 1363 496 252 62 23 chr3 102059333 102059352 -57540431 - ID_B1 SINE B4 -10 214 80 1 1363 264 30 0 0 chr3 102060092 102060125 -57539658 + (TG)n Simple_repeat Simple_repeat 2 34 0 1 1363 834 271 143 9 chr3 102060136 102060359 -57539424 - ORR1E LTR MaLR -52 307 55 1 1363 359 299 105 33 chr3 102060384 102060536 -57539247 - L2a LINE L2 -319 3107 2945 1 1363 234 0 0 0 chr3 102060582 102060608 -57539175 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 1 1363 1158 251 15 15 chr3 102060609 102060880 -57538903 + B4A SINE B4 4 274 -18 1 1363 330 256 127 37 chr3 102060976 102061110 -57538673 - B1F SINE Alu -3 146 1 1 1363 250 309 30 82 chr3 102061241 102061375 -57538408 + RMER15 LTR ERVL 1 127 -448 1 1363 341 316 46 6 chr3 102061421 102061597 -57538186 + RMER15 LTR ERVL 352 562 -13 1 1363 295 312 104 0 chr3 102061637 102061733 -57538050 - PB1D7 SINE Alu -13 107 2 1 1363 25 65 0 0 chr3 102061781 102061827 -57537956 + AT_rich Low_complexity Low_complexity 1 46 0 1 1363 281 241 65 54 chr3 102062818 102062910 -57536873 - RMER15 LTR ERVL -51 524 432 1 1363 361 363 54 56 chr3 102063307 102063674 -57536109 - MER70B LTR ERVL -111 467 34 1 1363 1352 165 104 33 chr3 102063676 102063946 -57535837 + B4 SINE B4 4 292 0 1 1363 219 125 0 0 chr3 102063946 102063986 -57535797 + (CA)n Simple_repeat Simple_repeat 1 40 0 1 1363 373 152 45 0 chr3 102064510 102064576 -57535207 + RMER6D LTR ERVK 1 69 -651 1 1363 381 193 13 27 chr3 102064599 102064748 -57535035 + (TG)n Simple_repeat Simple_repeat 2 148 0 1 1363 933 253 0 0 chr3 102064757 102064939 -57534844 - B3A SINE B2 -16 182 1 1 1363 222 184 0 38 chr3 102065077 102065156 -57534627 + (TG)n Simple_repeat Simple_repeat 2 77 0 1 1363 543 258 64 32 chr3 102065166 102065322 -57534461 - RSINE1 SINE B4 -1 164 4 1 1363 342 264 137 69 chr3 102065589 102065764 -57534019 + MLT1H2 LTR MaLR 295 481 -8 1 1363 24 0 0 0 chr3 102067075 102067099 -57532684 + GC_rich Low_complexity Low_complexity 1 24 0 1 1363 303 173 0 0 chr3 102067167 102067248 -57532535 + (CAGA)n Simple_repeat Simple_repeat 2 82 0 1 1363 504 0 0 0 chr3 102067870 102067926 -57531857 + (GA)n Simple_repeat Simple_repeat 1 56 0 1 1363 827 183 8 0 chr3 102067930 102068183 -57531600 + (TG)n Simple_repeat Simple_repeat 1 254 0 1 1363 1643 154 132 31 chr3 102068308 102068471 -57531312 + ORR1C2 LTR MaLR 1 171 -213 1 1363 486 0 0 0 chr3 102068471 102068525 -57531258 + (TC)n Simple_repeat Simple_repeat 1 54 0 1 1363 1643 154 132 31 chr3 102068525 102068577 -57531206 + ORR1C2 LTR MaLR 172 233 -151 1 1363 216 0 0 0 chr3 102068577 102068601 -57531182 + (CCTG)n Simple_repeat Simple_repeat 3 26 0 1 1363 1643 154 132 31 chr3 102068601 102068733 -57531050 + ORR1C2 LTR MaLR 234 382 -2 1 1363 678 226 107 0 chr3 102069022 102069199 -57530584 - B3A SINE B2 0 198 3 1 1363 1387 141 56 0 chr3 102069230 102069443 -57530340 + URR1B DNA MER1_type 1 225 0 1 1363 202 349 118 87 chr3 102069626 102069855 -57529928 - MIRb SINE MIR -11 257 22 1 1363 662 124 19 19 chr3 102069892 102069999 -57529784 - URR1A DNA MER1_type -89 137 31 1 1363 238 364 25 8 chr3 102070940 102071062 -57528721 + MIRb SINE MIR 19 142 -126 1 1363 806 270 56 62 chr3 102071150 102071438 -57528345 - B4A SINE B4 -2 290 5 1 1363 508 316 79 17 chr3 102071910 102072087 -57527696 + MER102c DNA MER1_type 5 192 -139 1 1363 325 286 96 64 chr3 102072635 102072822 -57526961 - B3A SINE B2 -4 194 2 1 1363 201 318 0 29 chr3 102072931 102072999 -57526784 - MIR3 SINE MIR -50 158 93 1 1363 277 357 97 7 chr3 102073226 102073381 -57526402 + MLT1F LTR MaLR 1 169 -379 1 1363 371 252 98 65 chr3 102073491 102073644 -57526139 + MLT1F1 LTR MaLR 403 569 0 1 1363 736 249 68 19 chr3 102073719 102073924 -57525859 - MLT1A0 LTR MaLR -37 328 114 1 1363 237 369 44 92 chr3 102073931 102074137 -57525646 + MLT1A1 LTR MaLR 1 196 -212 1 1363 276 247 69 23 chr3 102074201 102074288 -57525495 + MLT1A1 LTR MaLR 302 392 -16 1 1363 1756 291 56 5 chr3 102074596 102075187 -57524596 - L1MB7 LINE L1 -19 6165 5545 1 1363 913 314 77 19 chr3 102075358 102075683 -57524100 + MLT1J LTR MaLR 8 351 -161 1 1363 476 230 93 29 chr3 102076365 102076504 -57523279 - MLT1A1 LTR MaLR 0 408 261 1 1363 386 274 204 19 chr3 102077677 102077893 -57521890 + MLT1A1-int LTR MaLR 1466 1721 -14 1 1363 545 292 102 94 chr3 102077904 102078297 -57521486 + MLT1A1 LTR MaLR 1 396 -12 1 1363 1418 243 86 34 chr3 102078330 102078713 -57521070 + MTD LTR MaLR 3 405 -14 1 1363 248 77 26 0 chr3 102078765 102078804 -57520979 + (TCCC)n Simple_repeat Simple_repeat 2 41 0 1 1363 484 239 25 17 chr3 102079470 102079589 -57520194 + PB1D7 SINE Alu 1 120 0 1 1363 222 220 17 17 chr3 102080453 102080513 -57519270 + BC1_Mm scRNA scRNA 2 61 -91 1 1363 291 218 0 0 chr3 102080461 102080516 -57519267 + ID SINE ID 11 65 -159 1 1363 240 250 0 0 chr3 102080567 102080647 -57519136 + (TG)n Simple_repeat Simple_repeat 2 81 0 1 1363 259 256 36 71 chr3 102080647 102080731 -57519052 + ID_B1 SINE B4 144 224 0 1 1363 213 262 33 0 chr3 102082163 102082224 -57517559 + L2c LINE L2 3325 3387 0 1 1363 232 218 0 52 chr3 102082596 102082654 -57517129 + PB1D9 SINE Alu 1 55 -65 1 1363 225 154 0 0 chr3 102082654 102082693 -57517090 + G-rich Low_complexity Low_complexity 5 43 0 1 1363 459 284 10 0 chr3 102082693 102082795 -57516988 + B1F2 SINE Alu 41 143 -6 1 1363 393 221 11 11 chr3 102083895 102083982 -57515801 - ORR1E LTR MaLR -2 357 271 1 1363 504 284 89 123 chr3 102083992 102084471 -57515312 - RLTR12B LTR ERVK -159 409 1 1 1363 1511 225 9 36 chr3 102084475 102084807 -57514976 - MTD LTR MaLR -95 324 2 1 1363 367 314 56 12 chr3 102085442 102085606 -57514177 + LTR48 LTR ERV1 469 615 -172 1 1363 213 156 0 0 chr3 102085746 102085778 -57514005 - ID4 SINE ID -37 46 15 1 1363 264 284 0 0 chr3 102085815 102085882 -57513901 - B1F SINE Alu -15 134 68 1 1363 535 281 93 62 chr3 102085889 102085971 -57513812 - Lx8 LINE L1 -1003 6470 6368 1 1363 1578 216 117 0 chr3 102085971 102086346 -57513437 + MTD LTR MaLR 1 419 0 1 1363 535 281 93 62 chr3 102086346 102086521 -57513262 - Lx8 LINE L1 -1106 6367 6206 1 1363 256 254 14 69 chr3 102086655 102086727 -57513056 - PB1D10 SINE Alu -45 72 5 1 1363 192 143 0 0 chr3 102087136 102087178 -57512605 + (CCA)n Simple_repeat Simple_repeat 2 43 0 1 1363 342 0 0 0 chr3 102087213 102087251 -57512532 + (CA)n Simple_repeat Simple_repeat 2 39 0 1 1363 21 0 0 0 chr3 102087280 102087301 -57512482 + AT_rich Low_complexity Low_complexity 1 21 0 1 1363 975 278 53 76 chr3 102087812 102088555 -57511228 + L1_Rod LINE L1 5005 5788 -512 1 1363 289 258 41 41 chr3 102089365 102089462 -57510321 + ORR1D2 LTR MaLR 273 369 -1 1 1363 24 0 0 0 chr3 102089616 102089640 -57510143 + AT_rich Low_complexity Low_complexity 1 24 0 1 1363 2001 147 18 87 chr3 102089694 102090074 -57509709 - ORR1B1 LTR MaLR 0 394 41 1 1363 4739 122 45 108 chr3 102090081 102090977 -57508806 - ORR1B1-int LTR MaLR 0 1963 1125 1 1363 3578 184 64 35 chr3 102090975 102091771 -57508012 - ORR1B1-int LTR MaLR -1143 820 2 1 1363 1945 145 40 86 chr3 102091772 102092143 -57507640 - ORR1B1 LTR MaLR 0 394 41 1 1363 836 288 65 31 chr3 102092809 102093164 -57506619 - RMER20A LTR ERVK 0 516 150 1 1363 459 225 34 59 chr3 102093320 102093438 -57506345 - RMER20A LTR ERVK -502 125 11 1 1363 2463 30 0 150 chr3 102093489 102093883 -57505900 - RLTR10B2 LTR ERVK -30 335 1 1 1363 225 0 0 0 chr3 102093972 102093997 -57505786 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 1 1363 493 315 0 33 chr3 102094057 102094241 -57505542 + RMER15-int LTR ERVL 1509 1686 -3313 1 1363 656 131 32 21 chr3 102094249 102094382 -57505401 + RMER17C LTR ERVK 1 236 -722 1 1363 658 91 141 0 chr3 102094379 102094478 -57505305 + B1_Mus1 SINE Alu 36 148 0 1 1363 1336 136 8 134 chr3 102094489 102094855 -57504928 + RMER17C LTR ERVK 73 392 -18 1 1363 217 0 0 57 chr3 102095420 102095455 -57504328 + (CAAAC)n Simple_repeat Simple_repeat 2 34 0 1 1363 1809 297 89 43 chr3 102095501 102096285 -57503498 + RMER15-int LTR ERVL 4148 4967 -32 1 1363 399 221 30 83 chr3 102096290 102096423 -57503360 + RMER15 LTR ERVL 1 126 -449 1 1363 601 291 177 13 chr3 102096450 102096687 -57503096 + RMER15 LTR ERVL 286 561 -14 1 1363 670 239 132 82 chr3 102096758 102096910 -57502873 + B3A SINE B2 1 159 -39 2 1363 288 0 0 0 chr3 102096910 102096942 -57502841 + (CA)n Simple_repeat Simple_repeat 2 33 0 2 1363 449 239 132 82 chr3 102096942 102096971 -57502812 + B2_Mm2 SINE B2 159 191 -4 2 1363 276 333 86 66 chr3 102096945 102097398 -57502385 - LTR37B LTR ERV1 -4 464 3 2 1363 703 324 125 25 chr3 102097504 102097865 -57501918 + MLT2C1 LTR ERVL 1 397 0 2 1363 4723 79 6 10 chr3 102098114 102098742 -57501041 - L1_Mus3 LINE L1 -14 6624 5999 2 1363 1816 63 38 0 chr3 102098742 102098981 -57500802 + L1_Mus3 LINE L1 5739 5986 -652 2 1363 1717 171 28 3 chr3 102099206 102099494 -57500289 - ORR1B2 LTR MaLR -72 295 1 2 1363 715 316 56 15 chr3 102099678 102099948 -57499835 - MLT2B1 LTR ERVL -21 499 219 2 1363 334 269 47 19 chr3 102099954 102100060 -57499723 + B1F SINE Alu 22 130 -19 2 1363 1645 164 137 60 chr3 102100061 102100412 -57499371 + ORR1C1 LTR MaLR 1 378 0 2 1363 236 170 19 0 chr3 102100424 102100447 -57499336 + polypurine Low_complexity Low_complexity 1 23 0 2 1363 390 127 0 0 chr3 102100447 102100518 -57499265 + (CAGA)n Simple_repeat Simple_repeat 2 72 0 2 1363 236 170 19 0 chr3 102100518 102100547 -57499236 + polypurine Low_complexity Low_complexity 24 53 0 2 1363 603 246 89 28 chr3 102100547 102100727 -57499056 - MLT2B1 LTR ERVL -329 191 1 2 1363 2373 170 114 22 chr3 102101152 102101696 -57498087 - Lx4B LINE L1 -4 7054 6509 2 1363 448 296 52 40 chr3 102101885 102102207 -57497576 - RLTR15 LTR ERVK -19 340 43 2 1363 321 118 0 0 chr3 102102920 102102971 -57496812 + (TATG)n Simple_repeat Simple_repeat 4 54 0 2 1363 489 310 0 0 chr3 102102977 102103106 -57496677 - RSINE1 SINE B4 -35 130 2 2 1363 420 288 108 25 chr3 102103106 102103168 -57496615 - LTR48 LTR ERV1 -91 696 633 2 1363 4061 105 5 11 chr3 102103168 102103738 -57496045 - RMER2 LTR ERV1 0 567 1 2 1363 420 304 239 27 chr3 102103738 102104095 -57495688 - LTR48 LTR ERV1 -155 632 1 2 1363 265 309 78 13 chr3 102104172 102104326 -57495457 - L1MC LINE L1 -2032 5850 5687 2 1363 438 136 0 0 chr3 102104352 102104433 -57495350 + (CA)n Simple_repeat Simple_repeat 2 82 0 2 1363 237 330 57 57 chr3 102104445 102104551 -57495232 - L1MC LINE L1 -2218 5664 5559 2 1363 897 42 0 0 chr3 102104752 102104870 -57494913 + (GA)n Simple_repeat Simple_repeat 1 118 0 2 1364 773 176 186 6 chr3 102105341 102105524 -57494259 - MTD LTR MaLR -4 415 200 2 1364 915 92 0 0 chr3 102105525 102105656 -57494127 + (TTTC)n Simple_repeat Simple_repeat 3 133 0 2 1364 264 122 0 0 chr3 102105657 102105698 -57494085 + (TTCTCC)n Simple_repeat Simple_repeat 4 44 0 2 1364 10577 79 10 19 chr3 102105720 102106948 -57492835 - Lx3_Mus LINE L1 0 7009 5795 2 1364 996 118 0 0 chr3 102106948 102107083 -57492700 - B1_Mus2 SINE Alu -10 137 3 2 1364 10577 64 4 35 chr3 102107083 102107744 -57492039 - Lx3_Mus LINE L1 -89 5797 5138 2 1364 604 218 26 31 chr3 102107744 102107897 -57491886 - MTD LTR MaLR -183 238 76 2 1364 594 270 18 36 chr3 102107904 102108069 -57491714 - MTD LTR MaLR -246 173 12 2 1364 563 332 58 37 chr3 102108150 102108391 -57491392 + MLT1H LTR MaLR 79 324 -225 2 1364 267 237 17 0 chr3 102108554 102108613 -57491170 + MTD LTR MaLR 1 60 -361 2 1364 1279 224 86 0 chr3 102109107 102109212 -57490571 + MTD LTR MaLR 105 213 -206 2 1364 450 0 0 0 chr3 102109212 102109262 -57490521 + (GA)n Simple_repeat Simple_repeat 2 51 0 2 1364 1279 224 86 0 chr3 102109262 102109446 -57490337 + MTD LTR MaLR 214 418 -1 2 1364 468 0 0 0 chr3 102109457 102109509 -57490274 + (TG)n Simple_repeat Simple_repeat 1 52 0 2 1364 901 248 75 29 chr3 102110249 102110527 -57489256 - Tigger7 DNA MER2_type 0 2491 2201 2 1364 1410 297 51 8 chr3 102110526 102110896 -57488887 - Tigger7 DNA MER2_type -2094 397 12 2 1364 6866 128 35 14 chr3 102110931 102112023 -57487760 + Lx4A LINE L1 5944 7058 0 2 1364 258 132 0 0 chr3 102112146 102112199 -57487584 + (TC)n Simple_repeat Simple_repeat 2 54 0 2 1364 38 0 0 0 chr3 102112238 102112276 -57487507 + AT_rich Low_complexity Low_complexity 1 38 0 2 1364 1321 102 37 0 chr3 102112704 102112891 -57486892 - B2_Mm2 SINE B2 0 195 2 2 1364 369 232 0 0 chr3 102113026 102113121 -57486662 + (TA)n Simple_repeat Simple_repeat 1 95 0 2 1364 629 323 35 10 chr3 102113133 102113336 -57486447 - B3 SINE B2 -7 209 2 2 1364 22 0 0 0 chr3 102114652 102114674 -57485109 + AT_rich Low_complexity Low_complexity 1 22 0 2 1364 193 167 0 36 chr3 102114814 102114870 -57484913 + GA-rich Low_complexity Low_complexity 2 55 0 2 1364 508 261 43 12 chr3 102116315 102116478 -57483305 + MER58A DNA MER1_type 45 212 -12 2 1364 565 337 23 23 chr3 102116696 102116957 -57482826 + MLT1C LTR MaLR 199 459 -8 2 1364 343 236 60 45 chr3 102116999 102117132 -57482651 + ID_B1 SINE B4 4 138 -86 2 1364 1499 192 67 6 chr3 102117489 102117834 -57481949 + ORR1D1 LTR MaLR 1 366 -8 2 1364 1051 333 40 32 chr3 102118366 102118894 -57480889 - L1MB3 LINE L1 -14 6169 5638 2 1364 229 264 28 0 chr3 102119045 102119117 -57480666 + L1M3 LINE L1 5830 5903 -280 2 1364 764 53 0 17 chr3 102119128 102119243 -57480540 - L1_Mus2 LINE L1 -1 6565 6453 2 1364 846 155 71 54 chr3 102120824 102121008 -57478775 + B2_Mm2 SINE B2 1 187 -8 2 1364 501 138 0 0 chr3 102121422 102121516 -57478267 + (TG)n Simple_repeat Simple_repeat 1 94 0 2 1364 199 354 0 0 chr3 102124586 102124651 -57475132 - L2b LINE L2 -25 3350 3286 2 1364 302 308 90 0 chr3 102124823 102124956 -57474827 - MIRb SINE MIR -121 147 3 2 1364 240 316 28 134 chr3 102125762 102125941 -57473842 + RSINE1 SINE B4 2 161 -4 2 1364 491 171 11 0 chr3 102126059 102126147 -57473636 + MTEa LTR MaLR 3 91 -288 2 1364 1013 230 139 33 chr3 102126163 102126645 -57473138 - L1MCa LINE L1 -5059 2069 1537 2 1364 310 245 65 47 chr3 102126727 102126834 -57472949 - RSINE1 SINE B4 -14 151 43 2 1364 1247 249 100 12 chr3 102126855 102127196 -57472587 + MTEa LTR MaLR 9 379 0 2 1364 1149 300 120 52 chr3 102127204 102128008 -57471775 - L1MCa LINE L1 -5598 1530 62 2 1364 628 281 117 64 chr3 102128332 102128690 -57471093 + MTE2a LTR MaLR 14 390 -29 2 1364 275 292 0 0 chr3 102130034 102130106 -57469677 + (CATATA)n Simple_repeat Simple_repeat 1 72 0 2 1364 3794 302 133 61 chr3 102130211 102131173 -57468610 - L1MB4 LINE L1 -183 5997 4960 2 1364 310 355 16 16 chr3 102131173 102131296 -57468487 - RSINE1 SINE B4 -11 154 32 2 1364 3794 302 133 61 chr3 102131296 102132459 -57467324 - L1MB4 LINE L1 -183 4959 3703 2 1364 414 0 0 0 chr3 102132459 102132505 -57467278 + (TCTA)n Simple_repeat Simple_repeat 4 49 0 2 1364 3794 294 145 25 chr3 102132505 102133009 -57466774 - L1MB4 LINE L1 -2412 3731 3139 2 1364 683 208 37 60 chr3 102133009 102133224 -57466559 - B3 SINE B2 -3 213 4 2 1364 3794 294 145 25 chr3 102133224 102134081 -57465702 - L1MB4 LINE L1 -3005 3138 2252 2 1364 184 209 23 0 chr3 102134129 102134172 -57465611 - MIRc SINE MIR -126 142 99 2 1364 551 285 40 35 chr3 102134298 102134498 -57465285 + RMER30 DNA MER1_type 2 202 0 2 1364 520 259 93 0 chr3 102137649 102137811 -57461972 - MER5B DNA MER1_type -1 177 1 2 1364 276 30 0 0 chr3 102138842 102138875 -57460908 + (TTCA)n Simple_repeat Simple_repeat 2 34 0 2 1364 450 0 0 0 chr3 102138948 102138998 -57460785 + (TTTA)n Simple_repeat Simple_repeat 2 51 0 2 1364 552 293 7 0 chr3 102139033 102139173 -57460610 - RSINE1 SINE B4 -23 142 2 2 1364 224 329 12 0 chr3 102139830 102139915 -57459868 - MIR SINE MIR -85 177 92 2 1364 193 222 0 0 chr3 102140113 102140158 -57459625 + MIRc SINE MIR 76 120 -148 2 1364 238 247 62 82 chr3 102140933 102141030 -57458753 - RMER10A LTR ERVL -27 415 321 2 1364 210 105 0 0 chr3 102141147 102141185 -57458598 + (ACTG)n Simple_repeat Simple_repeat 4 41 0 2 1364 428 192 0 10 chr3 102141186 102141286 -57458497 + GA-rich Low_complexity Low_complexity 2 100 0 2 1364 254 254 0 0 chr3 102141505 102141564 -57458219 + (TG)n Simple_repeat Simple_repeat 1 59 0 2 1364 360 0 0 0 chr3 102141564 102141604 -57458179 + (CA)n Simple_repeat Simple_repeat 1 40 0 2 1364 6896 94 30 0 chr3 102142821 102143792 -57455991 + Lx3B LINE L1 5974 6973 0 2 1364 964 103 6 13 chr3 102143794 102143951 -57455832 + (GAAA)n Simple_repeat Simple_repeat 2 157 0 2 1364 446 187 56 9 chr3 102143951 102144054 -57455729 + RSINE1 SINE B4 17 124 -41 2 1364 450 0 0 0 chr3 102144054 102144104 -57455679 + (CA)n Simple_repeat Simple_repeat 2 51 0 2 1364 222 284 67 11 chr3 102144443 102144532 -57455251 - L2a LINE L2 -2 3424 3331 2 1364 378 0 0 0 chr3 102145120 102145162 -57454621 + (TG)n Simple_repeat Simple_repeat 1 42 0 2 1364 431 315 91 37 chr3 102145801 102146042 -57453741 + B4 SINE B4 2 255 -37 2 1364 426 20 0 0 chr3 102146087 102146138 -57453645 + (CA)n Simple_repeat Simple_repeat 2 52 0 2 1364 336 267 40 75 chr3 102146175 102146349 -57453434 - MTEb LTR MaLR -15 364 197 2 1364 181 275 0 0 chr3 102146525 102146565 -57453218 + MIRc SINE MIR 35 74 -194 2 1364 222 37 0 0 chr3 102147582 102147609 -57452174 + (TTCA)n Simple_repeat Simple_repeat 1 27 0 2 1364 243 214 62 100 chr3 102148068 102148198 -57451585 - MLT1N2 LTR MaLR -6 556 432 2 1364 246 294 95 14 chr3 102148458 102148606 -57451177 + MLT1A0 LTR MaLR 206 365 0 2 1364 414 0 0 0 chr3 102149873 102149919 -57449864 + (TG)n Simple_repeat Simple_repeat 2 47 0 2 1364 312 27 0 0 chr3 102151355 102151392 -57448391 + (TCTG)n Simple_repeat Simple_repeat 4 40 0 2 1364 971 322 72 83 chr3 102151858 102152458 -57447325 - MLT1G LTR MaLR 0 595 3 2 1364 314 311 86 112 chr3 102152692 102152960 -57446823 - L1MC4 LINE L1 -1080 6962 6702 2 1364 35 24 0 0 chr3 102153020 102153062 -57446721 + AT_rich Low_complexity Low_complexity 1 42 0 2 1364 284 259 60 40 chr3 102153412 102153561 -57446222 - L1MC4 LINE L1 -1928 5954 5803 2 1364 434 320 66 20 chr3 102153624 102153994 -57445789 - L1MC4 LINE L1 -2205 5677 5290 2 1364 402 74 0 0 chr3 102155218 102155272 -57444511 + (CCAA)n Simple_repeat Simple_repeat 2 55 0 2 1364 1107 87 0 0 chr3 102156368 102156506 -57443277 + B1_Mus2 SINE Alu 1 138 -9 2 1364 213 65 0 0 chr3 102156506 102156537 -57443246 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 2 1364 354 292 104 78 chr3 102156687 102156917 -57442866 - MLT1K LTR MaLR -6 589 354 2 1364 283 203 48 27 chr3 102157018 102157165 -57442618 + (TTATA)n Simple_repeat Simple_repeat 1 150 0 2 1364 190 132 66 0 chr3 102157165 102157241 -57442542 + (TA)n Simple_repeat Simple_repeat 1 81 0 2 1364 1233 41 0 0 chr3 102158249 102158396 -57441387 + B1_Mus2 SINE Alu 1 147 0 2 1364 742 190 51 0 chr3 102158485 102158622 -57441161 + RSINE1 SINE B4 3 146 -19 3 1364 447 52 0 0 chr3 102158635 102158693 -57441090 + (CA)n Simple_repeat Simple_repeat 1 58 0 3 1364 265 319 68 20 chr3 102158882 102159029 -57440754 + MLT1G1 LTR MaLR 424 577 -2 3 1364 232 374 21 32 chr3 102159796 102159984 -57439799 - MIRc SINE MIR -19 249 64 3 1364 224 371 55 14 chr3 102160341 102160486 -57439297 - MIRc SINE MIR -23 245 95 3 1364 227 152 0 21 chr3 102161482 102161529 -57438254 + (CAT)n Simple_repeat Simple_repeat 1 46 0 3 1364 216 0 0 0 chr3 102161738 102161762 -57438021 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 3 1364 727 286 28 0 chr3 102161765 102161947 -57437836 + B4A SINE B4 104 290 -2 3 1364 372 22 0 0 chr3 102162489 102162534 -57437249 + (TC)n Simple_repeat Simple_repeat 2 46 0 3 1364 265 326 88 7 chr3 102163890 102164026 -57435757 + L2a LINE L2 3276 3422 -4 3 1364 302 127 0 14 chr3 102165497 102165569 -57434214 + (CAAA)n Simple_repeat Simple_repeat 2 72 0 3 1364 339 234 0 69 chr3 102166041 102166142 -57433641 - MTEb LTR MaLR -285 94 1 3 1364 210 105 0 0 chr3 102166370 102166408 -57433375 + (TC)n Simple_repeat Simple_repeat 2 39 0 3 1364 198 91 0 0 chr3 102166412 102166445 -57433338 + (GA)n Simple_repeat Simple_repeat 1 33 0 3 1364 958 321 33 12 chr3 102166786 102167123 -57432660 + MLT1A0 LTR MaLR 1 344 -21 3 1364 233 217 56 28 chr3 102167447 102167518 -57432265 + MLT1A0 LTR MaLR 364 436 -174 3 1364 215 348 0 74 chr3 102169243 102169364 -57430419 - MIRb SINE MIR -37 231 120 3 1364 26 64 0 0 chr3 102169799 102169846 -57429937 + AT_rich Low_complexity Low_complexity 1 47 0 3 1364 2377 169 111 57 chr3 102170617 102171138 -57428645 - RMER4B LTR ERVK 0 585 39 3 1364 189 0 0 0 chr3 102171138 102171159 -57428624 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 3 1364 2377 169 111 57 chr3 102171159 102171177 -57428606 - RMER4B LTR ERVK -547 38 17 3 1364 736 289 93 43 chr3 102172162 102172419 -57427364 + B4A SINE B4 7 276 -16 3 1364 691 250 115 11 chr3 102173592 102173879 -57425904 + L1MD1 LINE L1 3030 3346 -2800 3 1364 226 288 50 0 chr3 102173917 102173997 -57425786 + L1MC LINE L1 3801 3884 -2262 3 1364 428 298 34 54 chr3 102174008 102174157 -57425626 - B3A SINE B2 -5 211 66 3 1364 695 116 9 0 chr3 102174916 102175028 -57424755 + (TG)n Simple_repeat Simple_repeat 1 113 0 3 1364 532 153 18 18 chr3 102175208 102175321 -57424462 + CT-rich Low_complexity Low_complexity 2 114 0 3 1364 22 0 0 0 chr3 102175551 102175573 -57424210 + AT_rich Low_complexity Low_complexity 1 22 0 3 1364 1642 297 129 22 chr3 102175592 102177033 -57422750 + L1MD1 LINE L1 4630 6231 -11 3 1364 391 216 172 43 chr3 102177162 102177278 -57422505 - B3A SINE B2 -14 202 72 3 1364 3106 32 6 0 chr3 102177502 102177846 -57421937 + ORR1A0 LTR MaLR 1 346 0 3 1364 1303 265 212 39 chr3 102178328 102179254 -57420529 - L1MB5 LINE L1 -23 6151 5051 3 1364 1527 246 79 8 chr3 102179254 102179607 -57420176 + ORR1C1 LTR MaLR 1 378 0 3 1364 1057 259 151 29 chr3 102179607 102179853 -57419930 - L1MB5 LINE L1 -1096 5050 4782 3 1364 489 17 0 0 chr3 102179875 102179933 -57419850 + (TG)n Simple_repeat Simple_repeat 2 59 0 3 1364 514 274 53 0 chr3 102179933 102180046 -57419737 - RSINE1 SINE B4 -41 124 6 3 1364 311 303 74 88 chr3 102180063 102180360 -57419423 - L1MB5 LINE L1 -1409 4737 4445 3 1364 207 0 0 0 chr3 102180367 102180390 -57419393 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 3 1364 203 167 41 20 chr3 102180591 102180640 -57419143 + GA-rich Low_complexity Low_complexity 2 51 0 3 1364 205 251 50 42 chr3 102181433 102181525 -57418258 - MIRb SINE MIR -94 174 73 3 1364 459 0 0 0 chr3 102182036 102182087 -57417696 + (TG)n Simple_repeat Simple_repeat 2 52 0 3 1364 262 379 28 0 chr3 102182599 102182744 -57417039 - MIRb SINE MIR -100 168 20 3 1364 782 324 86 18 chr3 102182846 102183230 -57416553 - MLT1F2 LTR MaLR -125 435 26 3 1364 25 0 0 0 chr3 102183641 102183666 -57416117 + AT_rich Low_complexity Low_complexity 1 25 0 3 1364 626 249 81 5 chr3 102183784 102183982 -57415801 - Lx8 LINE L1 -351 7122 6910 3 1364 267 295 43 146 chr3 102184372 102184626 -57415157 + MIR SINE MIR 16 249 -19 3 1364 309 51 0 0 chr3 102184733 102184772 -57415011 + (TG)n Simple_repeat Simple_repeat 2 40 0 3 1364 805 170 189 0 chr3 102185028 102185187 -57414596 + URR1A DNA MER1_type 2 190 -36 3 1364 494 291 173 73 chr3 102186332 102186632 -57413151 + ORR1E LTR MaLR 1 330 -29 3 1364 30 0 0 0 chr3 102187537 102187567 -57412216 + AT_rich Low_complexity Low_complexity 1 30 0 3 1364 235 26 50 25 chr3 102188815 102188855 -57410928 + (CAAAA)n Simple_repeat Simple_repeat 4 44 0 3 1364 21 0 0 0 chr3 102188898 102188919 -57410864 + AT_rich Low_complexity Low_complexity 1 21 0 3 1364 280 189 18 18 chr3 102188946 102189059 -57410724 + (TCTCTG)n Simple_repeat Simple_repeat 4 116 0 3 1364 321 353 0 0 chr3 102189059 102189195 -57410588 + (TG)n Simple_repeat Simple_repeat 2 137 0 3 1364 551 285 7 7 chr3 102189203 102189348 -57410435 - B3A SINE B2 -43 155 11 3 1364 397 310 30 60 chr3 102192054 102192222 -57407561 - RSINE1 SINE B4 0 165 3 3 1364 531 175 97 0 chr3 102192492 102192595 -57407188 + ID_B1 SINE B4 111 223 -1 3 1364 844 283 61 64 chr3 102192927 102193222 -57406561 - MLT1A0 LTR MaLR 0 365 72 3 1364 519 313 69 54 chr3 102194236 102194496 -57405287 - MamRep137 DNA TcMar? -138 306 43 3 1364 297 0 0 0 chr3 102194793 102194826 -57404957 + (TATG)n Simple_repeat Simple_repeat 2 34 0 3 1364 6922 32 25 1 chr3 102194838 102195622 -57404161 + L1Md_F3 LINE L1 5768 6570 -14 3 1364 298 359 101 43 chr3 102195802 102196128 -57403655 + ORR1E LTR MaLR 4 348 -11 3 1364 261 83 0 0 chr3 102196204 102196240 -57403543 + (TCC)n Simple_repeat Simple_repeat 3 38 0 3 1364 1158 229 123 30 chr3 102196695 102197028 -57402755 - MTD LTR MaLR -14 405 42 3 1364 371 350 17 0 chr3 102197143 102197263 -57402520 - B1F1 SINE Alu -1 148 27 3 1364 36203 46 2 3 chr3 102197285 102202657 -57397126 + L1Md_T LINE L1 126 5589 -297 3 1364 9027 31 1 0 chr3 102202657 102203652 -57396131 + L1Md_T LINE L1 5590 6585 0 3 1364 1122 279 112 21 chr3 102203966 102204439 -57395344 - L1MC LINE L1 -2071 5811 5296 3 1364 506 290 137 9 chr3 102204916 102205128 -57394655 - MT2A LTR ERVL 0 533 295 3 1364 345 362 53 35 chr3 102205162 102205354 -57394429 - L1M5 LINE L1 -1153 4993 4796 3 1364 911 244 166 99 chr3 102205354 102205709 -57394074 - MTE2b LTR MaLR 0 379 1 3 1364 345 362 53 35 chr3 102205709 102205742 -57394041 - L1M5 LINE L1 -1351 4795 4764 3 1364 188 67 0 32 chr3 102205841 102205872 -57393911 + (TTAA)n Simple_repeat Simple_repeat 1 30 0 3 1364 423 0 0 0 chr3 102205940 102205987 -57393796 + (TATG)n Simple_repeat Simple_repeat 2 48 0 3 1364 186 43 0 0 chr3 102206299 102206322 -57393461 + (CAA)n Simple_repeat Simple_repeat 2 24 0 3 1364 1008 301 69 79 chr3 102206508 102207015 -57392768 - MLT2B2 LTR ERVL -9 506 7 3 1364 1285 294 80 2 chr3 102207068 102207531 -57392252 - ERVL-B4-int LTR ERVL -65 5649 5151 3 1364 363 152 0 0 chr3 102207538 102207617 -57392166 + T-rich Low_complexity Low_complexity 1 79 0 3 1364 270 85 237 0 chr3 102207625 102207684 -57392099 + ORR1C1 LTR MaLR 306 378 0 3 1364 619 275 14 0 chr3 102207785 102207927 -57391856 + RSINE1 SINE B4 3 146 -19 3 1364 209 33 33 0 chr3 102207933 102207963 -57391820 + (CA)n Simple_repeat Simple_repeat 1 31 0 3 1364 346 325 44 0 chr3 102208282 102208396 -57391387 + MLT1G1 LTR MaLR 13 131 -448 3 1364 192 77 0 0 chr3 102208465 102208491 -57391292 + (TTC)n Simple_repeat Simple_repeat 2 27 0 3 1364 1534 223 19 42 chr3 102209526 102209887 -57389896 - ORR1E LTR MaLR -6 353 1 3 1364 307 318 132 44 chr3 102209894 102210144 -57389639 + L1ME1 LINE L1 1988 2259 -3983 3 1364 1492 317 60 45 chr3 102210173 102210842 -57388941 + L1ME1 LINE L1 2302 2983 -3163 3 1364 333 238 12 48 chr3 102210842 102210926 -57388857 - ID4_ SINE ID -2 81 1 3 1364 1492 317 60 45 chr3 102210926 102211180 -57388603 + L1ME1 LINE L1 2984 3238 -2908 3 1364 3555 224 182 2 chr3 102211269 102212108 -57387675 + RMER1A Other Other 14 996 -34 3 1364 453 103 0 0 chr3 102212108 102212176 -57387607 + (CA)n Simple_repeat Simple_repeat 1 68 0 3 1364 3555 224 182 2 chr3 102212176 102212198 -57387585 + RMER1A Other Other 997 1029 -1 3 1364 820 184 12 25 chr3 102212320 102212482 -57387301 - B3A SINE B2 -36 162 3 3 1364 237 229 172 22 chr3 102212508 102212642 -57387141 + L1MD LINE L1 3239 3392 -2754 3 1364 296 284 210 39 chr3 102212650 102212855 -57386928 + L1ME1 LINE L1 3485 3724 -2422 3 1364 218 32 0 31 chr3 102212870 102212902 -57386881 + (TTA)n Simple_repeat Simple_repeat 1 31 0 3 1364 504 248 8 47 chr3 102213728 102213855 -57385928 - MLT1B LTR MaLR -9 381 260 3 1364 326 316 152 26 chr3 102213999 102214110 -57385673 + L1ME1 LINE L1 4903 5026 -1120 3 1364 450 0 0 0 chr3 102214110 102214160 -57385623 + (TTTTA)n Simple_repeat Simple_repeat 5 54 0 3 1364 326 316 152 26 chr3 102214160 102214396 -57385387 + L1ME1 LINE L1 5027 5294 -852 3 1364 676 326 47 78 chr3 102214417 102214946 -57384837 + L1ME1 LINE L1 5358 5870 -309 3 1364 246 156 0 0 chr3 102215856 102215901 -57383882 + (CAT)n Simple_repeat Simple_repeat 3 47 0 3 1364 723 261 206 7 chr3 102216119 102216405 -57383378 - Lx8 LINE L1 -2 7471 7129 3 1364 330 262 112 53 chr3 102217686 102217855 -57381928 - L3 LINE CR1 -98 4391 4213 3 1364 420 20 0 0 chr3 102218126 102218175 -57381608 + (CA)n Simple_repeat Simple_repeat 2 50 0 3 1364 555 16 0 0 chr3 102218175 102218238 -57381545 + (GA)n Simple_repeat Simple_repeat 2 65 0 3 1364 277 357 33 55 chr3 102218349 102218530 -57381253 - L3 LINE CR1 -844 3645 3469 3 1364 2584 121 38 0 chr3 102218809 102219174 -57380609 + RLTR30 LTR ERV1 1 379 0 3 1364 337 314 0 25 chr3 102219175 102219296 -57380487 + MLT1A1 LTR MaLR 291 408 0 3 1364 258 406 19 9 chr3 102219555 102219662 -57380121 + L2b LINE L2 3267 3374 -1 3 1364 2534 187 57 33 chr3 102220313 102220855 -57378928 + RLTR12A LTR ERVK 2 556 -12 3 1364 1815 301 92 12 chr3 102220861 102221527 -57378256 + Lx8 LINE L1 6726 7444 -29 3 1364 243 304 26 9 chr3 102222535 102222651 -57377132 + L1_Mur1 LINE L1 1664 1781 -4105 3 1364 291 54 0 0 chr3 102223063 102223100 -57376683 + (TG)n Simple_repeat Simple_repeat 2 38 0 3 1364 698 230 7 0 chr3 102223104 102223239 -57376544 - B1_Mur1 SINE Alu -9 140 5 3 1364 643 272 37 67 chr3 102223417 102223744 -57376039 + L1M2 LINE L1 3604 3920 -2223 3 1364 361 298 0 28 chr3 102223746 102223853 -57375930 + RSINE1 SINE B4 1 104 -61 4 1364 456 99 0 0 chr3 102223886 102223957 -57375826 + (CATA)n Simple_repeat Simple_repeat 2 72 0 4 1364 1877 275 84 40 chr3 102224209 102225096 -57374687 + L1M2 LINE L1 4024 4962 -1181 3 1364 255 31 0 0 chr3 102225096 102225128 -57374655 + (CAA)n Simple_repeat Simple_repeat 1 32 0 4 1364 1877 275 84 40 chr3 102225128 102225239 -57374544 + L1M2 LINE L1 4963 5066 -1077 3 1364 183 100 0 0 chr3 102225534 102225564 -57374219 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 4 1364 642 329 139 22 chr3 102226516 102227025 -57372758 - L2 LINE L2 -591 2828 2260 4 1364 775 174 0 7 chr3 102227288 102227419 -57372364 + ORR1C2 LTR MaLR 3 132 -252 4 1364 1720 126 81 52 chr3 102227419 102227763 -57372020 - ORR1B1 LTR MaLR 0 394 41 4 1364 1183 147 21 107 chr3 102227768 102228049 -57371734 + ORR1C2 LTR MaLR 126 382 -2 4 1364 259 347 97 0 chr3 102228667 102228791 -57370992 + MIR SINE MIR 55 190 -72 4 1364 552 129 0 0 chr3 102230348 102230449 -57369334 + (TG)n Simple_repeat Simple_repeat 1 101 0 4 1364 1738 239 43 3 chr3 102230456 102230847 -57368936 - MTD LTR MaLR -12 407 1 4 1364 247 308 0 0 chr3 102230848 102230913 -57368870 - B4A SINE B4 -226 66 2 4 1364 283 323 47 8 chr3 102232142 102232270 -57367513 + MIRb SINE MIR 109 241 -27 4 1364 240 231 0 44 chr3 102232638 102232706 -57367077 + CT-rich Low_complexity Low_complexity 2 66 0 4 1364 291 210 23 80 chr3 102233329 102233417 -57366366 + MTE2b LTR MaLR 1 83 -296 4 1364 395 266 86 55 chr3 102233438 102233601 -57366182 + L1MD2 LINE L1 6137 6304 -55 4 170 38758 30 0 0 chr3 102233619 102240302 -57359481 - L1Md_T LINE L1 0 6585 1 4 1365 259 159 62 31 chr3 102240299 102240364 -57359419 + L1MD2 LINE L1 6291 6357 -2 4 1365 576 340 16 89 chr3 102240373 102240676 -57359107 + B4A SINE B4 1 281 -11 4 1365 2351 177 61 14 chr3 102240700 102241194 -57358589 - RMER15 LTR ERVL -18 557 41 4 1365 227 286 0 16 chr3 102241244 102241308 -57358475 - RMER15 LTR ERVL -512 63 1 4 1365 627 263 43 10 chr3 102241543 102241823 -57357960 + ORR1E LTR MaLR 1 325 -34 4 1365 36100 60 5 1 chr3 102242067 102247321 -57352462 - L1Md_A LINE L1 -195 5688 411 4 1365 2318 69 14 0 chr3 102247319 102247661 -57352122 - L1_Mm LINE L1 -1720 4163 3784 4 1365 6799 70 3 10 chr3 102247661 102248544 -57351239 + L1Md_F2 LINE L1 5703 6579 -3 4 1365 231 60 60 0 chr3 102248567 102248617 -57351166 + (TTTTTG)n Simple_repeat Simple_repeat 1 53 0 4 1365 483 312 21 14 chr3 102248693 102248833 -57350950 + B1F SINE Alu 1 141 -8 4 1365 2331 154 5 50 chr3 102251716 102252112 -57347671 - ORR1C1 LTR MaLR 0 378 1 4 1365 250 288 14 0 chr3 102252692 102252765 -57347018 + (TGGA)n Simple_repeat Simple_repeat 3 76 0 4 1365 526 259 127 20 chr3 102252795 102252992 -57346791 + B4A SINE B4 3 220 -72 4 1365 1827 244 42 13 chr3 102253003 102253481 -57346302 + Lx9 LINE L1 7152 7643 -1 4 1365 7350 54 1 0 chr3 102253624 102254524 -57345259 - L1Md_F2 LINE L1 -79 5804 4904 4 1365 5524 91 1 19 chr3 102254525 102255297 -57344486 + L1Md_F2 LINE L1 5825 6582 0 4 1365 187 330 61 10 chr3 102255618 102255716 -57344067 - MIRc SINE MIR -107 161 59 4 1365 614 126 0 10 chr3 102255990 102256094 -57343689 + (TCTCCC)n Simple_repeat Simple_repeat 6 108 0 4 1365 435 309 89 87 chr3 102256586 102256990 -57342793 + MLT1A LTR MaLR 1 396 -12 4 1365 4251 53 0 0 chr3 102257651 102258158 -57341625 + L1_Mus1 LINE L1 6061 6567 0 4 1365 203 143 48 0 chr3 102258159 102258201 -57341582 + T-rich Low_complexity Low_complexity 6 49 0 4 1365 207 0 0 0 chr3 102258339 102258362 -57341421 + (CA)n Simple_repeat Simple_repeat 2 24 0 4 1365 198 0 0 0 chr3 102258367 102258389 -57341394 + (CCA)n Simple_repeat Simple_repeat 1 22 0 4 1365 845 260 90 18 chr3 102259047 102259423 -57340360 + MT2A LTR ERVL 13 462 -71 4 1365 247 306 36 27 chr3 102260089 102260200 -57339583 + L1M1 LINE L1 5762 5873 -430 4 1365 363 44 0 0 chr3 102260200 102260245 -57339538 + (CAAAA)n Simple_repeat Simple_repeat 3 47 0 4 1365 691 290 107 12 chr3 102260290 102260810 -57338973 - L1M2 LINE L1 -716 5581 5010 4 1365 202 331 132 16 chr3 102262206 102262335 -57337448 - L2a LINE L2 0 3426 3283 4 1365 376 312 65 7 chr3 102262385 102262524 -57337259 - MIRb SINE MIR -68 200 54 4 1365 357 281 61 18 chr3 102262649 102262812 -57336971 - L2a LINE L2 -225 3201 3032 4 1365 332 328 68 19 chr3 102266211 102266416 -57333367 - MIRb SINE MIR -3 265 51 4 1365 29 0 0 0 chr3 102266979 102267008 -57332775 + GC_rich Low_complexity Low_complexity 1 29 0 4 1365 286 303 11 34 chr3 102268194 102268311 -57331472 + PB1D7 SINE Alu 6 119 -1 4 1365 180 97 0 0 chr3 102268383 102268414 -57331369 + (GA)n Simple_repeat Simple_repeat 2 32 0 4 1365 910 272 57 60 chr3 102268474 102268842 -57330941 + LTR81A LTR ERV1? 41 407 -943 4 1365 22 35 0 0 chr3 102270551 102270580 -57329203 + AT_rich Low_complexity Low_complexity 1 29 0 4 1365 483 249 136 40 chr3 102270788 102270964 -57328819 + ID_B1 SINE B4 32 224 0 4 1365 208 237 0 0 chr3 102270990 102271028 -57328755 + polypurine Low_complexity Low_complexity 2 39 0 4 1365 189 0 0 0 chr3 102275947 102275968 -57323815 + (CAGGG)n Simple_repeat Simple_repeat 1 21 0 4 1365 237 329 38 0 chr3 102276993 102277072 -57322711 - MER20B DNA MER1_type -605 178 97 4 1365 979 283 4 51 chr3 102277970 102278227 -57321556 + B4A SINE B4 12 256 -36 4 1365 243 88 0 0 chr3 102278228 102278262 -57321521 + (CA)n Simple_repeat Simple_repeat 2 35 0 4 1365 459 0 0 0 chr3 102279137 102279188 -57320595 + (CA)n Simple_repeat Simple_repeat 2 52 0 4 1365 1298 252 97 6 chr3 102280259 102280590 -57319193 - ORR1D2 LTR MaLR 0 370 10 4 1365 268 213 0 0 chr3 102280585 102280632 -57319151 + PB1 SINE Alu 78 124 -3 4 1365 2235 137 87 0 chr3 102280675 102281032 -57318751 - ORR1B1 LTR MaLR -6 388 1 4 1365 705 134 0 11 chr3 102281032 102281156 -57318627 - ORR1B1-int LTR MaLR 0 1509 1401 4 1365 258 196 20 0 chr3 102281145 102281196 -57318587 - ORR1D2 LTR MaLR -342 52 1 4 1365 251 240 26 26 chr3 102282689 102282766 -57317017 + GA-rich Low_complexity Low_complexity 2 78 0 4 1365 191 234 21 21 chr3 102282990 102283038 -57316745 + MIR SINE MIR 20 67 -195 4 1365 312 279 0 35 chr3 102283201 102283316 -57316467 + CT-rich Low_complexity Low_complexity 2 112 0 4 1365 357 129 0 0 chr3 102283672 102283742 -57316041 + (TC)n Simple_repeat Simple_repeat 2 71 0 4 1365 726 72 0 0 chr3 102283742 102283839 -57315944 + (TAGA)n Simple_repeat Simple_repeat 4 100 0 4 1365 221 324 47 0 chr3 102285320 102285415 -57314368 + MIR SINE MIR 63 164 -104 4 1365 511 318 112 7 chr3 102286070 102286355 -57313428 + L2b LINE L2 2137 2451 -968 4 1365 345 287 0 31 chr3 102286661 102286758 -57313025 + ID_B1 SINE B4 61 154 -70 4 1365 378 242 53 32 chr3 102286697 102286791 -57312992 + PB1D10 SINE Alu 13 108 -9 4 1365 619 296 46 36 chr3 102286817 102287013 -57312770 + MER20 DNA MER1_type 1 198 -21 4 1365 201 350 71 49 chr3 102287050 102287233 -57312550 + L2b LINE L2 2952 3138 -237 4 1365 183 231 0 0 chr3 102289407 102289446 -57310337 + MIRc SINE MIR 117 155 -113 4 1365 204 205 0 0 chr3 102290274 102290313 -57309470 + (TCTG)n Simple_repeat Simple_repeat 3 41 0 4 1365 188 286 84 68 chr3 102291739 102291887 -57307896 - L2c LINE L2 -1 3386 3215 4 1365 378 281 19 10 chr3 102292081 102292185 -57307598 + MER63D DNA AcHobo 280 384 -677 4 1365 263 292 199 62 chr3 102293628 102293774 -57306009 + MER91A DNA Tip100 15 180 -16 4 1365 1145 261 173 99 chr3 102294811 102295460 -57304323 + MER44D DNA MER2_type 9 705 0 4 1365 229 292 212 0 chr3 102295876 102295989 -57303794 + MIRb SINE MIR 127 263 -5 4 1365 382 258 61 10 chr3 102296179 102296277 -57303506 - B4 SINE B4 -189 103 1 4 1365 276 30 0 0 chr3 102296556 102296589 -57303194 + (TCCA)n Simple_repeat Simple_repeat 1 33 0 4 1365 414 291 33 33 chr3 102296787 102296940 -57302843 - ID_B1 SINE B4 -1 223 71 4 1365 1634 102 49 4 chr3 102297069 102297314 -57302469 - MTC LTR MaLR -165 256 1 4 1365 192 40 0 0 chr3 102298216 102298241 -57301542 + (GA)n Simple_repeat Simple_repeat 2 26 0 4 1365 277 319 2 34 chr3 102298958 102299055 -57300728 - MTEb LTR MaLR -17 362 260 4 1365 1607 103 73 47 chr3 102299179 102299454 -57300329 + L1Md_F2 LINE L1 6301 6582 0 4 1365 509 226 28 63 chr3 102299477 102299619 -57300164 + MTD LTR MaLR 228 364 -55 4 1365 535 321 28 75 chr3 102300998 102301210 -57298573 - MER20 DNA MER1_type -15 204 3 4 1365 223 268 91 23 chr3 102301339 102301427 -57298356 + MIRb SINE MIR 80 173 -95 4 1365 563 261 97 0 chr3 102303068 102303244 -57296539 + MamRep137 DNA TcMar? 69 261 -183 4 1365 402 115 0 0 chr3 102303370 102303431 -57296352 + (TC)n Simple_repeat Simple_repeat 2 62 0 4 1365 414 0 0 0 chr3 102304829 102304875 -57294908 + (TG)n Simple_repeat Simple_repeat 1 46 0 4 1365 611 308 19 6 chr3 102304875 102305035 -57294748 - B4A SINE B4 -126 166 5 4 1365 432 0 0 0 chr3 102305690 102305738 -57294045 + (TC)n Simple_repeat Simple_repeat 1 48 0 4 1365 220 274 0 31 chr3 102307642 102307706 -57292077 + GA-rich Low_complexity Low_complexity 3 64 0 4 1365 1040 271 65 48 chr3 102308074 102308384 -57291399 - MTE2b LTR MaLR -33 346 32 4 1365 394 282 13 60 chr3 102308446 102308597 -57291186 - HAL1-2a_MD LINE L1 -536 2488 2345 4 1365 243 224 26 13 chr3 102308602 102308679 -57291104 + (ATGGTG)n Simple_repeat Simple_repeat 2 79 0 4 1365 180 0 0 0 chr3 102309015 102309035 -57290748 + (TTG)n Simple_repeat Simple_repeat 2 21 0 4 1365 328 269 118 0 chr3 102310463 102310556 -57289227 - L1MD LINE L1 -2954 3192 3089 4 1365 855 88 0 50 chr3 102310590 102310769 -57289014 + (TCTCCC)n Simple_repeat Simple_repeat 3 172 0 4 1365 414 0 0 0 chr3 102310771 102310817 -57288966 + (CA)n Simple_repeat Simple_repeat 2 47 0 4 1365 427 335 6 28 chr3 102313633 102313811 -57285972 + MER5B DNA MER1_type 2 175 -3 4 1365 330 300 137 118 chr3 102314257 102314696 -57285087 - MLT2B2 LTR ERVL -2 513 67 5 1365 354 301 93 75 chr3 102314501 102314727 -57285056 - MTEa LTR MaLR -121 258 29 5 1365 4422 160 66 29 chr3 102315422 102316253 -57283530 - RMER13B LTR ERVK -36 872 11 5 1365 248 314 22 34 chr3 102317038 102317127 -57282656 + L2a LINE L2 3301 3388 -38 5 1365 198 0 0 0 chr3 102317130 102317152 -57282631 + (TGAA)n Simple_repeat Simple_repeat 3 24 0 5 1365 278 287 70 33 chr3 102318351 102318506 -57281277 + MIR SINE MIR 20 180 -82 5 1365 356 272 79 33 chr3 102318961 102319113 -57280670 + MER5A DNA MER1_type 8 166 -23 5 1365 1272 155 27 18 chr3 102320662 102320885 -57278898 + URR1B DNA MER1_type 1 225 0 5 1365 208 300 116 8 chr3 102322325 102322446 -57277337 - L2a LINE L2 -6 3420 3287 5 1365 253 226 0 0 chr3 102322863 102322925 -57276858 + (TA)n Simple_repeat Simple_repeat 2 63 0 5 1365 371 21 21 0 chr3 102325820 102325868 -57273915 + (TG)n Simple_repeat Simple_repeat 2 50 0 5 1365 297 0 0 0 chr3 102326201 102326234 -57273549 + (A)n Simple_repeat Simple_repeat 1 33 0 5 1365 396 0 0 0 chr3 102328275 102328319 -57271464 + (TG)n Simple_repeat Simple_repeat 2 45 0 5 1365 186 217 42 42 chr3 102328433 102328481 -57271302 + MIRb SINE MIR 110 157 -111 5 1365 816 162 0 0 chr3 102328524 102328672 -57271111 + (TA)n Simple_repeat Simple_repeat 1 148 0 5 1365 207 0 0 0 chr3 102328672 102328695 -57271088 + (TG)n Simple_repeat Simple_repeat 2 24 0 5 1365 211 278 0 100 chr3 102328872 102328952 -57270831 - MIRb SINE MIR -2 266 195 5 1365 379 284 29 0 chr3 102331487 102331589 -57268194 - MER5A1 DNA MER1_type -61 105 1 5 1365 234 91 0 0 chr3 102332877 102332910 -57266873 + (T)n Simple_repeat Simple_repeat 1 33 0 5 1365 543 128 0 0 chr3 102333383 102333469 -57266314 + (T)n Simple_repeat Simple_repeat 1 86 0 5 1365 825 283 70 76 chr3 102334188 102334677 -57265106 - L3 LINE CR1 -167 4322 3837 5 1365 213 273 118 54 chr3 102334771 102334864 -57264919 + MIRm SINE MIR 136 234 -42 5 1365 7236 17 1 0 chr3 102334944 102335758 -57264025 - L1Md_T LINE L1 -149 5734 4920 5 1365 6867 39 0 1 chr3 102335758 102336571 -57263212 + L1Md_T LINE L1 5771 6582 0 5 1365 1819 279 66 25 chr3 102337944 102338623 -57261160 + L1MA4 LINE L1 5317 6023 -277 5 1365 8233 219 68 42 chr3 102339056 102339736 -57260047 + Lx9 LINE L1 571 1275 -6333 5 1365 240 59 0 0 chr3 102339736 102339770 -57260013 + (CAA)n Simple_repeat Simple_repeat 2 35 0 5 1365 8233 216 168 119 chr3 102339770 102341211 -57258572 + Lx9 LINE L1 1276 2725 -3122 5 1365 547 155 10 0 chr3 102341211 102341308 -57258475 + ORR1B2 LTR MaLR 6 103 -264 5 1365 8233 216 168 119 chr3 102341308 102342053 -57257730 + Lx9 LINE L1 2726 3476 -2371 5 1365 688 241 14 0 chr3 102342053 102342194 -57257589 + B1_Mus2 SINE Alu 5 147 0 5 1365 8233 216 168 119 chr3 102342194 102342315 -57257468 + Lx9 LINE L1 3477 3581 -2266 5 1365 1014 9 0 0 chr3 102342315 102342430 -57257353 + (GGAAA)n Simple_repeat Simple_repeat 3 117 0 5 1365 8233 216 168 119 chr3 102342430 102342719 -57257064 + Lx9 LINE L1 3582 4172 -1670 5 1365 649 212 15 0 chr3 102342719 102342851 -57256932 + B1_Mus2 SINE Alu 8 141 -6 5 1365 660 26 0 0 chr3 102342856 102342934 -57256849 + (GGGGA)n Simple_repeat Simple_repeat 5 82 0 5 1365 8233 225 176 92 chr3 102342934 102344989 -57254794 + Lx9 LINE L1 4178 6550 -1094 5 1365 246 116 0 0 chr3 102344990 102345033 -57254750 + (TATATG)n Simple_repeat Simple_repeat 5 47 0 5 1365 484 205 58 19 chr3 102345034 102345188 -57254595 + Lx9 LINE L1 7465 7624 -20 5 1365 765 58 0 0 chr3 102345883 102345986 -57253797 + (GA)n Simple_repeat Simple_repeat 2 104 0 5 1365 360 373 80 59 chr3 102345989 102346277 -57253506 - RMER13A LTR ERVK -3 857 564 5 1365 1054 205 90 87 chr3 102346381 102346760 -57253023 - RMER13A LTR ERVK -480 380 1 5 1365 300 191 0 0 chr3 102347077 102347166 -57252617 + (TG)n Simple_repeat Simple_repeat 2 90 0 5 1365 2143 162 51 29 chr3 102348339 102348451 -57251332 + MTC LTR MaLR 1 103 -318 5 1365 1180 178 23 0 chr3 102348451 102348670 -57251113 - URR1B DNA MER1_type -1 224 1 5 1365 2143 162 51 29 chr3 102348670 102348969 -57250814 + MTC LTR MaLR 104 421 0 5 1365 793 197 49 2 chr3 102349358 102349608 -57250175 + RMER19B LTR ERVK 1 207 -695 5 1365 4278 141 94 11 chr3 102349635 102350457 -57249326 - RMER19B LTR ERVK -12 890 1 5 1365 186 71 0 0 chr3 102350802 102350830 -57248953 + (GAGTG)n Simple_repeat Simple_repeat 3 30 0 5 1365 505 255 78 44 chr3 102352282 102352487 -57247296 + MLT1B LTR MaLR 91 302 -88 5 1365 807 302 50 8 chr3 102352431 102352691 -57247092 + B4A SINE B4 8 278 -14 5 1365 342 0 0 0 chr3 102352707 102352745 -57247038 + (CA)n Simple_repeat Simple_repeat 1 38 0 5 1365 484 329 7 0 chr3 102352969 102353121 -57246662 - Lx9 LINE L1 -681 6963 6811 5 1365 1682 137 97 61 chr3 102353121 102353463 -57246320 - ORR1B1 LTR MaLR 0 394 41 5 1365 739 293 30 8 chr3 102353512 102353777 -57246006 + Lx9 LINE L1 7218 7488 -156 5 1365 928 225 36 32 chr3 102354113 102354361 -57245422 - RLTR16 LTR ERVK -256 249 1 5 1365 234 233 6 164 chr3 102354361 102354520 -57245263 + Lx9 LINE L1 7510 7643 -1 5 1365 2274 139 43 5 chr3 102354707 102355104 -57244679 - MTC LTR MaLR 0 421 10 5 1365 906 258 9 9 chr3 102355303 102355514 -57244269 + B3 SINE B2 6 216 0 5 1365 370 308 29 29 chr3 102355944 102356081 -57243702 + MLT1B LTR MaLR 421 557 -53 5 1365 416 258 68 44 chr3 102356230 102356539 -57243244 - MLT1A0 LTR MaLR -2 372 5 5 1365 248 281 31 0 chr3 102356542 102356606 -57243177 - MER58A DNA MER1_type -157 67 2 5 1365 414 0 0 0 chr3 102356626 102356672 -57243111 + (TTG)n Simple_repeat Simple_repeat 2 47 0 5 1365 441 291 68 67 chr3 102356674 102356973 -57242810 - B4 SINE B4 -3 289 7 5 1365 21 57 0 0 chr3 102357625 102357660 -57242123 + AT_rich Low_complexity Low_complexity 1 35 0 5 1365 704 310 136 2 chr3 102357774 102358069 -57241714 - MLT1A0 LTR MaLR -19 346 21 5 1365 198 0 0 0 chr3 102358313 102358335 -57241448 + (A)n Simple_repeat Simple_repeat 1 22 0 5 1365 472 289 65 29 chr3 102358337 102358583 -57241200 - L1MC LINE L1 -428 5812 5558 5 1365 233 358 39 47 chr3 102359214 102359472 -57240311 - L1MC LINE L1 -1415 4731 4476 5 1365 1275 67 0 0 chr3 102359504 102359683 -57240100 + (TG)n Simple_repeat Simple_repeat 2 180 0 5 1365 621 301 111 10 chr3 102359752 102360041 -57239742 + MER2 DNA MER2_type 16 333 -12 5 1365 649 300 97 35 chr3 102360052 102360394 -57239389 + LTR79 LTR ERVL 33 395 -132 5 1365 463 212 30 22 chr3 102360488 102360623 -57239160 + Lx9 LINE L1 7508 7643 -1 5 1365 2271 289 56 42 chr3 102360598 102361604 -57238179 - L1MA9 LINE L1 -18 6294 5275 5 1365 198 0 0 0 chr3 102362192 102362214 -57237569 + (TTAA)n Simple_repeat Simple_repeat 3 24 0 5 1365 889 256 56 27 chr3 102362313 102362603 -57237180 + RLTR11A2 LTR ERVK 1 278 -163 5 1365 597 64 0 0 chr3 102362603 102362681 -57237102 + (GGA)n Simple_repeat Simple_repeat 2 79 0 5 1365 1004 194 74 68 chr3 102362681 102362991 -57236792 + RLTR11A2 LTR ERVK 216 527 0 5 1365 238 269 164 0 chr3 102362993 102363133 -57236650 - L1MC LINE L1 -3017 3129 2967 5 1365 243 0 0 0 chr3 102363140 102363167 -57236616 + (TG)n Simple_repeat Simple_repeat 2 28 0 5 1365 835 319 77 72 chr3 102363452 102364338 -57235445 - L1MC5 LINE L1 -436 7525 6636 5 1365 405 353 85 52 chr3 102366018 102366290 -57233493 + B4A SINE B4 9 289 -3 5 1365 459 209 0 0 chr3 102366294 102366409 -57233374 + (CA)n Simple_repeat Simple_repeat 2 116 0 5 1365 426 233 51 17 chr3 102366422 102366540 -57233243 + HERV16-int LTR ERVL 1310 1431 -3565 5 170 8690 35 0 1 chr3 102366672 102368282 -57231501 - L1Md_F2 LINE L1 0 6582 4975 5 1366 6911 224 91 23 chr3 102368644 102370407 -57229376 - Lx7 LINE L1 -210 7486 5604 5 1366 504 32 0 0 chr3 102370420 102370482 -57229301 + (TG)n Simple_repeat Simple_repeat 2 63 0 5 1366 775 250 11 6 chr3 102371068 102371249 -57228534 - B4 SINE B4 -109 183 2 5 1366 315 104 0 0 chr3 102372082 102372130 -57227653 + (TG)n Simple_repeat Simple_repeat 1 48 0 5 1366 24 0 0 0 chr3 102372163 102372187 -57227596 + AT_rich Low_complexity Low_complexity 1 24 0 5 1366 1089 267 136 11 chr3 102372289 102372649 -57227134 - MTD LTR MaLR -14 405 1 5 1366 359 197 0 0 chr3 102372672 102372738 -57227045 + PB1D9 SINE Alu 46 111 -9 5 1366 522 46 0 0 chr3 102372740 102372805 -57226978 + (TAGA)n Simple_repeat Simple_repeat 4 68 0 5 1366 180 0 0 0 chr3 102372819 102372839 -57226944 + (GA)n Simple_repeat Simple_repeat 1 20 0 5 1366 390 324 85 47 chr3 102372840 102373180 -57226603 - L1MEe LINE L1 -3863 991 639 5 1366 370 292 10 0 chr3 102373810 102373906 -57225877 + PB1D10 SINE Alu 15 111 -6 5 1366 1819 166 102 3 chr3 102374226 102374558 -57225225 + ORR1B2 LTR MaLR 1 365 -2 5 1366 5457 191 48 26 chr3 102374709 102375842 -57223941 - Lx9 LINE L1 -1 7643 6486 5 1366 7746 165 28 23 chr3 102375891 102377685 -57222098 - Lx5 LINE L1 0 7050 5237 5 1366 207 100 0 0 chr3 102379316 102379346 -57220437 + (T)n Simple_repeat Simple_repeat 1 30 0 5 1366 3534 60 0 0 chr3 102379354 102379784 -57219999 - L1_Mus1 LINE L1 -1 6566 6137 5 1366 948 220 51 14 chr3 102379815 102380032 -57219751 + B4A SINE B4 8 232 -60 5 1366 369 0 0 0 chr3 102380094 102380135 -57219648 + (TAGA)n Simple_repeat Simple_repeat 2 42 0 5 1366 525 219 0 0 chr3 102382418 102382537 -57217246 + CT-rich Low_complexity Low_complexity 1 119 0 5 1366 231 303 22 88 chr3 102382555 102382736 -57217047 - L3 LINE CR1 -1596 2893 2725 5 1366 186 209 0 0 chr3 102383395 102383438 -57216345 - L3 LINE CR1 -2256 2233 2191 5 1366 1158 112 0 0 chr3 102384640 102384818 -57214965 + (TTCCC)n Simple_repeat Simple_repeat 3 180 0 5 1366 198 0 0 0 chr3 102384820 102384842 -57214941 + (TTCTC)n Simple_repeat Simple_repeat 4 25 0 5 1366 319 271 47 71 chr3 102386797 102386972 -57212811 + MIR3 SINE MIR 19 191 -17 5 1366 1892 178 55 3 chr3 102387064 102387425 -57212358 - RLTR14 LTR ERV1 0 382 3 5 1366 186 269 165 16 chr3 102388913 102389034 -57210749 + MIRb SINE MIR 59 197 -71 5 1366 1261 216 102 54 chr3 102389567 102389920 -57209863 + ORR1D2 LTR MaLR 1 370 0 5 1366 2428 151 7 26 chr3 102390973 102391040 -57208743 - MTC LTR MaLR 0 421 362 5 1366 2427 182 238 10 chr3 102391040 102391640 -57208143 + RMER19A LTR ERVK 1 737 0 5 1366 2428 151 7 26 chr3 102391640 102392001 -57207782 - MTC LTR MaLR -60 361 1 5 1366 243 308 72 34 chr3 102392592 102393071 -57206712 + L1MA4 LINE L1 1866 2426 -2190 5 1366 2331 320 78 27 chr3 102393244 102394979 -57204804 + L1MA4 LINE L1 2831 4654 -2191 5 1366 807 280 140 19 chr3 102394995 102395373 -57204410 + L1MA4 LINE L1 6166 6589 -413 5 1366 746 258 37 62 chr3 102395429 102395726 -57204057 - L1_Rod LINE L1 -354 5808 5457 6 1366 207 0 0 0 chr3 102396721 102396744 -57203039 + (A)n Simple_repeat Simple_repeat 1 23 0 6 1366 595 135 42 0 chr3 102397134 102397230 -57202553 - B3 SINE B2 -116 100 1 6 1366 21 36 0 0 chr3 102398226 102398254 -57201529 + AT_rich Low_complexity Low_complexity 1 28 0 6 1366 449 198 125 0 chr3 102398547 102398643 -57201140 + B3 SINE B2 5 112 -104 6 1366 312 189 0 0 chr3 102398634 102398687 -57201096 + B3 SINE B2 60 112 -104 6 1366 301 208 0 0 chr3 102398678 102398731 -57201052 + B3 SINE B2 60 112 -104 6 1366 301 208 0 0 chr3 102398722 102398775 -57201008 + B3 SINE B2 60 112 -104 6 1366 312 189 0 0 chr3 102398766 102398819 -57200964 + B3 SINE B2 60 112 -104 6 1366 286 208 0 0 chr3 102398810 102398863 -57200920 + B3 SINE B2 60 112 -104 6 1366 286 208 0 0 chr3 102398854 102398907 -57200876 + B3 SINE B2 60 112 -104 6 1366 286 208 0 0 chr3 102398898 102398951 -57200832 + B3 SINE B2 60 112 -104 6 1366 286 208 0 0 chr3 102398942 102398995 -57200788 + B3 SINE B2 60 112 -104 6 1366 372 234 28 42 chr3 102398986 102399147 -57200636 + B3 SINE B2 60 216 0 6 1366 331 211 43 32 chr3 102399599 102399692 -57200091 - MTE2a LTR MaLR -7 372 279 6 1366 609 14 0 0 chr3 102400162 102400232 -57199551 + (CAG)n Simple_repeat Simple_repeat 3 72 0 6 1366 1895 121 16 118 chr3 102402014 102402380 -57197403 + ORR1A4 LTR MaLR 1 329 0 6 1366 396 0 0 0 chr3 102402840 102402884 -57196899 + (CA)n Simple_repeat Simple_repeat 2 45 0 6 1366 348 380 7 26 chr3 102403909 102404063 -57195720 + ORR1E LTR MaLR 1 151 -208 6 1366 273 293 10 29 chr3 102404162 102404264 -57195519 + ORR1E LTR MaLR 258 357 -22 6 1366 413 271 104 8 chr3 102405263 102405397 -57194386 - RSINE1 SINE B4 -18 147 1 6 1366 189 0 0 0 chr3 102405516 102405537 -57194246 + (A)n Simple_repeat Simple_repeat 1 21 0 6 1366 921 265 24 41 chr3 102407023 102407318 -57192465 - B4 SINE B4 -1 291 2 6 1366 608 112 11 0 chr3 102408656 102408745 -57191038 - B1_Mur1 SINE Alu -26 123 34 6 1366 529 235 20 8 chr3 102408755 102408906 -57190877 - B4A SINE B4 -66 226 70 6 1366 190 330 39 20 chr3 102409172 102409274 -57190509 + MER5A DNA MER1_type 82 185 -4 6 1366 1180 244 15 93 chr3 102409331 102409805 -57189978 + RLTR11B LTR ERVK 1 437 -16 6 1366 588 290 32 0 chr3 102411244 102411399 -57188384 + RSINE1 SINE B4 2 161 -4 6 1366 192 77 0 0 chr3 102411474 102411500 -57188283 + (GGA)n Simple_repeat Simple_repeat 2 27 0 6 1366 387 281 25 0 chr3 102412045 102412166 -57187617 + MIR3 SINE MIR 71 194 -14 6 1366 22 0 0 0 chr3 102412700 102412722 -57187061 + AT_rich Low_complexity Low_complexity 1 22 0 6 1366 437 208 26 0 chr3 102412736 102412813 -57186970 + ID4_ SINE ID 2 80 -3 6 1366 250 242 61 0 chr3 102412860 102412926 -57186857 - MLT1H2 LTR MaLR -369 120 51 6 1366 21 57 0 0 chr3 102413231 102413266 -57186517 + AT_rich Low_complexity Low_complexity 1 35 0 6 1366 241 303 144 46 chr3 102413454 102413627 -57186156 - L2a LINE L2 -56 3370 3181 6 1366 594 28 0 0 chr3 102415165 102415237 -57184546 + (TC)n Simple_repeat Simple_repeat 1 72 0 6 1366 495 0 0 0 chr3 102415237 102415291 -57184492 + (CA)n Simple_repeat Simple_repeat 1 55 0 6 1366 715 189 10 120 chr3 102416715 102416907 -57182876 + B3 SINE B2 6 176 -40 6 1366 189 0 0 0 chr3 102416934 102416955 -57182828 + (ATG)n Simple_repeat Simple_repeat 3 23 0 6 1366 477 0 0 0 chr3 102417118 102417171 -57182612 + (TG)n Simple_repeat Simple_repeat 1 53 0 6 1366 1067 86 0 0 chr3 102418007 102418158 -57181625 - B2_Mm1a SINE B2 -4 189 39 6 1366 4040 77 25 13 chr3 102418269 102418819 -57180964 - L1Md_F2 LINE L1 0 6582 6026 6 1366 310 310 105 6 chr3 102419076 102419248 -57180535 - HAL1 LINE L1 -291 2216 2028 6 1366 1954 173 21 24 chr3 102419491 102419870 -57179913 + MTC LTR MaLR 36 413 -8 6 1366 430 347 16 0 chr3 102419965 102420155 -57179628 - HAL1 LINE L1 -855 1652 1460 6 1366 801 259 105 17 chr3 102420266 102420560 -57179223 + Lx8 LINE L1 7152 7471 -2 6 1366 263 294 135 6 chr3 102420814 102420992 -57178791 - HAL1 LINE L1 -1126 1381 1181 6 1366 449 295 69 32 chr3 102420997 102421214 -57178569 + L1M5 LINE L1 5377 5601 -523 6 1366 28 29 0 0 chr3 102421491 102421526 -57178257 + AT_rich Low_complexity Low_complexity 1 35 0 6 1366 652 296 117 45 chr3 102421547 102421805 -57177978 - L1MA4 LINE L1 -128 6028 5772 6 1366 243 61 0 0 chr3 102421805 102421838 -57177945 + (TCTG)n Simple_repeat Simple_repeat 4 36 0 6 1366 652 276 117 31 chr3 102421838 102422052 -57177731 - L1MA4 LINE L1 -529 5771 5531 6 1366 234 0 0 0 chr3 102422112 102422138 -57177645 + (TG)n Simple_repeat Simple_repeat 2 27 0 6 1366 333 337 10 0 chr3 102422160 102422261 -57177522 - RSINE1 SINE B4 -61 104 3 6 1366 870 259 75 19 chr3 102422427 102422695 -57177088 + B4 SINE B4 1 283 -9 6 1366 59 0 0 0 chr3 102422882 102422941 -57176842 + AT_rich Low_complexity Low_complexity 1 59 0 6 1366 3165 73 0 8 chr3 102423459 102423858 -57175925 - MTA_Mm LTR MaLR 0 396 1 6 1366 643 271 89 53 chr3 102424646 102425005 -57174778 - L1MA4 LINE L1 -363 5937 5566 6 1366 3217 298 83 59 chr3 102425095 102427244 -57172539 - L1MA4 LINE L1 -801 5342 3133 6 1366 1076 51 0 48 chr3 102427244 102427389 -57172394 - B1_Mm SINE Alu -9 138 1 6 1366 3217 298 83 59 chr3 102427389 102427730 -57172053 - L1MA4 LINE L1 -3011 3132 2791 6 1366 602 193 41 32 chr3 102427743 102427866 -57171917 + B1_Mur2 SINE Alu 4 127 -22 6 1366 346 339 85 24 chr3 102428051 102428381 -57171402 - L1_Mur2 LINE L1 -3330 2547 2198 6 1366 255 196 36 0 chr3 102428463 102428519 -57171264 - ID4_ SINE ID -21 62 5 6 1366 413 263 0 10 chr3 102428533 102428633 -57171150 - PB1D10 SINE Alu -14 103 5 6 1366 436 296 13 53 chr3 102428914 102429064 -57170719 - ID_B1 SINE B4 0 224 81 6 1366 262 244 187 32 chr3 102429384 102429507 -57170276 - Lx8 LINE L1 -16 7457 7316 6 1366 1636 268 80 13 chr3 102429542 102430094 -57169689 - Lx8 LINE L1 -252 7221 6633 6 1366 414 216 206 0 chr3 102430571 102430673 -57169110 + B3A SINE B2 1 123 -75 6 1366 351 65 0 0 chr3 102430678 102430724 -57169059 + (CA)n Simple_repeat Simple_repeat 1 46 0 6 1366 378 0 0 0 chr3 102430724 102430765 -57169018 + (GA)n Simple_repeat Simple_repeat 2 43 0 6 1366 24 32 0 0 chr3 102430765 102430796 -57168987 + AT_rich Low_complexity Low_complexity 1 31 0 6 1366 630 216 81 54 chr3 102430796 102430982 -57168801 - B3A SINE B2 -7 191 1 6 1366 255 236 152 41 chr3 102431175 102431353 -57168430 - L1MEf LINE L1 -775 5371 5188 6 1366 467 279 107 15 chr3 102431967 102432301 -57167482 - L1MEf LINE L1 -1553 4593 4235 6 1366 1729 147 114 11 chr3 102432470 102432821 -57166962 - MTD LTR MaLR -14 405 19 6 1366 235 229 0 0 chr3 102432937 102432985 -57166798 - L1MEf LINE L1 -3974 2172 2125 6 1366 830 130 55 0 chr3 102433872 102434018 -57165765 - URR1A DNA MER1_type 0 226 73 6 1366 286 294 22 97 chr3 102434270 102434455 -57165328 - L1MEf LINE L1 -4611 1631 1461 6 1366 454 327 0 13 chr3 102434819 102434971 -57164812 - MT2A LTR ERVL -137 396 247 6 1366 397 250 40 111 chr3 102435039 102435165 -57164618 - MTEa LTR MaLR -262 117 1 6 1366 373 255 45 9 chr3 102435168 102435279 -57164504 - MERVL_2A-int LTR ERVL -1 5666 5552 6 1366 325 148 88 33 chr3 102435354 102435445 -57164338 - MERVL_2A-int LTR ERVL -850 4907 4812 6 1366 843 220 113 127 chr3 102435445 102435506 -57164277 - MT2B LTR ERVL 0 601 558 6 1366 669 58 0 0 chr3 102435506 102435592 -57164191 + (TAGA)n Simple_repeat Simple_repeat 1 86 0 6 1366 843 222 104 120 chr3 102435592 102435997 -57163786 - MT2B LTR ERVL -44 557 7 6 1366 518 311 7 0 chr3 102436020 102436171 -57163612 - MERVL_2A-int LTR ERVL -948 4766 4615 6 1366 7279 278 77 47 chr3 102436161 102438782 -57161001 - MERVL_2A-int LTR ERVL -1370 4391 1693 6 1366 2152 155 50 10 chr3 102439096 102439493 -57160290 + MTC LTR MaLR 1 413 -8 6 1366 247 228 0 17 chr3 102440472 102440530 -57159253 + (TATG)n Simple_repeat Simple_repeat 2 58 0 6 1366 340 214 33 11 chr3 102440723 102440813 -57158970 - MIRc SINE MIR -162 106 15 6 1366 209 340 65 19 chr3 102441213 102441321 -57158462 + MIRb SINE MIR 24 136 -132 6 1366 278 312 52 0 chr3 102441731 102441808 -57157975 + ID4_ SINE ID 1 81 -2 6 1366 2244 160 48 45 chr3 102441940 102442358 -57157425 - MTC LTR MaLR 0 421 3 6 1366 662 249 113 26 chr3 102443664 102443858 -57155925 - MER58B DNA MER1_type -64 277 67 6 1366 1432 279 79 17 chr3 102444944 102445524 -57154259 + L1MA5 LINE L1 5662 6277 -23 6 1366 11915 77 3 3 chr3 102445513 102447810 -57151973 + L1_Mus1 LINE L1 4270 6566 -1 6 1366 229 182 0 18 chr3 102447816 102447872 -57151911 + L1MA6 LINE L1 6242 6296 -4 6 1366 622 252 43 0 chr3 102447881 102448020 -57151763 + RSINE1 SINE B4 4 148 -17 6 1366 23 33 0 0 chr3 102450518 102450548 -57149235 + AT_rich Low_complexity Low_complexity 1 30 0 6 1366 262 225 95 48 chr3 102451052 102451178 -57148605 - MER33 DNA MER1_type -40 284 153 6 1366 735 286 122 0 chr3 102451185 102451381 -57148402 - ID_B1 SINE B4 0 224 5 6 1366 468 279 0 48 chr3 102452307 102452543 -57147240 + C-rich Low_complexity Low_complexity 1 224 0 6 1366 748 226 86 10 chr3 102453540 102453737 -57146046 + B3 SINE B2 5 216 0 6 1366 414 282 65 51 chr3 102454100 102454238 -57145545 - B1F1 SINE Alu 0 149 10 6 1366 833 155 0 0 chr3 102454552 102454681 -57145102 - B3 SINE B2 -86 130 2 6 1366 221 355 42 49 chr3 102455074 102455216 -57144567 + MER5A DNA MER1_type 21 161 -28 6 1366 472 285 79 54 chr3 102455800 102455986 -57143797 - MIR SINE MIR -3 259 67 6 1366 1013 76 136 25 chr3 102455986 102456148 -57143635 + B2_Mm2 SINE B2 2 181 -14 6 1366 180 0 0 0 chr3 102456148 102456168 -57143615 + (CAA)n Simple_repeat Simple_repeat 2 21 0 6 1366 472 285 79 54 chr3 102456168 102456221 -57143562 - MIR SINE MIR -196 66 14 6 1366 927 164 0 0 chr3 102456221 102456392 -57143391 + CT-rich Low_complexity Low_complexity 1 171 0 6 1366 294 29 0 0 chr3 102456405 102456440 -57143343 + (TG)n Simple_repeat Simple_repeat 2 36 0 6 1366 202 26 0 133 chr3 102456720 102456765 -57143018 + (CACCC)n Simple_repeat Simple_repeat 4 42 0 6 1366 505 336 7 108 chr3 102457145 102457236 -57142547 - B4A SINE B4 0 292 216 6 1366 405 0 0 0 chr3 102457236 102457281 -57142502 + (TTG)n Simple_repeat Simple_repeat 1 45 0 7 1366 505 336 7 108 chr3 102457281 102457496 -57142287 - B4A SINE B4 -77 215 18 6 1366 713 169 0 0 chr3 102457756 102457874 -57141909 - B1_Mus2 SINE Alu 0 147 30 7 1366 291 327 66 13 chr3 102458631 102458783 -57141000 - MER5A1 DNA MER1_type -6 160 1 7 1366 362 330 61 91 chr3 102458848 102459178 -57140605 - MTEa LTR MaLR -59 320 1 7 1366 280 373 60 12 chr3 102459460 102459628 -57140155 - MIRb SINE MIR -80 188 13 7 1366 384 59 0 0 chr3 102459646 102459697 -57140086 + (TG)n Simple_repeat Simple_repeat 2 52 0 7 1366 199 252 165 25 chr3 102462799 102462939 -57136844 - MIR SINE MIR -59 209 43 7 1366 204 222 0 0 chr3 102462977 102463013 -57136770 + (CA)n Simple_repeat Simple_repeat 2 37 0 7 1366 340 338 97 15 chr3 102464378 102464645 -57135138 - Kanga2_a DNA Tc2 -115 773 485 7 1366 958 115 0 14 chr3 102465561 102465702 -57134081 + B1_Mus1 SINE Alu 10 148 0 7 1366 795 206 0 0 chr3 102465715 102465895 -57133888 + GA-rich Low_complexity Low_complexity 1 180 0 7 1366 537 58 0 0 chr3 102466226 102466295 -57133488 + (TG)n Simple_repeat Simple_repeat 2 70 0 7 1366 631 281 36 0 chr3 102466297 102466436 -57133347 - B3A SINE B2 -41 157 14 7 1366 237 208 0 0 chr3 102467561 102467638 -57132145 + (CA)n Simple_repeat Simple_repeat 1 77 0 7 1366 570 341 34 10 chr3 102468182 102468376 -57131407 + B4A SINE B4 1 192 -32 7 1366 937 204 79 5 chr3 102470534 102470736 -57129047 + ID_B1 SINE B4 2 218 -6 7 1366 243 269 43 27 chr3 102471289 102471476 -57128307 + RMER17A LTR ERVK 280 469 -282 7 1366 232 313 61 85 chr3 102471488 102471652 -57128131 + MLT1E1 LTR MaLR 389 548 -106 7 1366 1643 202 75 36 chr3 102472853 102472982 -57126801 + MTD LTR MaLR 2 144 -275 7 1366 2130 146 84 14 chr3 102472982 102473350 -57126433 + ORR1B1 LTR MaLR 1 394 0 7 1366 1643 202 75 36 chr3 102473350 102473605 -57126178 + MTD LTR MaLR 145 401 -18 7 1366 384 286 48 56 chr3 102473607 102473689 -57126094 + RSINE1 SINE B4 39 122 -43 7 1366 369 0 0 0 chr3 102473689 102473730 -57126053 + (TAGA)n Simple_repeat Simple_repeat 2 42 0 7 1366 384 286 48 56 chr3 102473730 102473773 -57126010 + RSINE1 SINE B4 123 163 -2 7 1366 183 129 0 0 chr3 102473775 102473806 -57125977 + (CAGG)n Simple_repeat Simple_repeat 1 31 0 7 1366 254 270 55 83 chr3 102473872 102473981 -57125802 + MIR3 SINE MIR 10 115 -93 7 1366 387 0 0 0 chr3 102476387 102476430 -57123353 + (TG)n Simple_repeat Simple_repeat 1 43 0 7 1366 644 298 116 42 chr3 102476599 102476935 -57122848 + MLT1F-int LTR MaLR 2 362 -1127 7 1366 251 279 78 103 chr3 102477033 102477237 -57122546 + MLT1F-int LTR MaLR 548 746 -743 7 1366 1218 314 134 16 chr3 102477282 102477790 -57121993 + MLT1F-int LTR MaLR 904 1471 -18 7 1366 309 383 69 32 chr3 102477810 102478026 -57121757 + MLT1F LTR MaLR 3 226 -322 7 1366 320 255 61 0 chr3 102478287 102478385 -57121398 + L1ME2 LINE L1 4969 5072 -1074 7 1366 332 284 141 57 chr3 102478536 102478800 -57120983 + L1ME2 LINE L1 5634 5924 -250 7 1366 480 263 228 9 chr3 102478879 102479278 -57120505 + L1ME3B LINE L1 5367 5851 -389 7 1366 25 0 0 0 chr3 102479376 102479401 -57120382 + AT_rich Low_complexity Low_complexity 1 25 0 7 1366 237 220 0 78 chr3 102480918 102480982 -57118801 + Arthur1C DNA Tip100 268 326 -37 7 1366 940 292 53 28 chr3 102481846 102482128 -57117655 + B4A SINE B4 1 289 -3 7 1366 328 307 116 28 chr3 102482158 102482339 -57117444 + L1ME3B LINE L1 5783 5979 -261 7 1366 523 360 5 23 chr3 102483181 102483400 -57116383 + LTR33 LTR ERVL 301 515 0 7 1366 433 94 38 30 chr3 102485784 102485916 -57113867 + T-rich Low_complexity Low_complexity 1 133 0 7 1366 702 152 6 105 chr3 102487919 102488081 -57111702 + ORR1D1 LTR MaLR 16 161 -213 7 1366 333 139 26 77 chr3 102488086 102488164 -57111619 + ORR1D1 LTR MaLR 310 394 0 7 1366 4978 211 86 43 chr3 102488165 102488558 -57111225 + ORR1D1-int LTR MaLR 2 391 -979 7 1366 2584 139 10 3 chr3 102488558 102488947 -57110836 - Lx4A LINE L1 0 7058 6667 7 1366 4978 212 87 42 chr3 102488947 102489722 -57110061 + ORR1D1-int LTR MaLR 392 1550 -185 7 1366 252 0 0 0 chr3 102490231 102490259 -57109524 + (T)n Simple_repeat Simple_repeat 1 28 0 7 1366 940 184 43 32 chr3 102490807 102490992 -57108791 + ORR1D1-int LTR MaLR 1183 1369 -1 7 1366 1385 196 83 20 chr3 102490996 102491344 -57108439 + ORR1D1 LTR MaLR 5 374 0 7 1366 809 296 55 10 chr3 102491833 102492126 -57107657 + Charlie22a DNA MER1_type 152 457 -34 7 1366 855 179 0 0 chr3 102493274 102493453 -57106330 + (CA)n Simple_repeat Simple_repeat 2 180 0 7 1366 1036 247 44 9 chr3 102493713 102493942 -57105841 + B4 SINE B4 52 288 -4 7 1366 534 16 0 0 chr3 102493953 102494016 -57105767 + (CA)n Simple_repeat Simple_repeat 2 64 0 7 1366 365 265 113 61 chr3 102496165 102496378 -57103405 + RMER12 LTR ERVK 770 993 -329 7 1366 2022 29 0 8 chr3 102497593 102497834 -57101949 + L1Md_F3 LINE L1 6332 6570 -14 7 1366 339 145 0 0 chr3 102497944 102498013 -57101770 + (CA)n Simple_repeat Simple_repeat 2 70 0 7 1367 198 256 72 12 chr3 102499305 102499388 -57100395 - MIRm SINE MIR -123 153 66 7 1367 817 211 79 0 chr3 102499848 102500000 -57099783 + B3 SINE B2 53 216 0 7 1367 496 247 176 0 chr3 102500160 102500330 -57099453 + MTEb LTR MaLR 168 367 -12 1 1367 327 310 104 37 chr3 102500352 102500486 -57099297 - MLT1M LTR MaLR -374 298 156 2 1367 507 33 0 0 chr3 102500730 102500791 -57098992 + (TC)n Simple_repeat Simple_repeat 2 62 0 3 1367 272 213 8 0 chr3 102500791 102500918 -57098865 + (TG)n Simple_repeat Simple_repeat 2 129 0 4 1367 988 299 37 18 chr3 102501474 102501747 -57098036 + B4A SINE B4 5 282 -10 5 1367 214 276 80 11 chr3 102502209 102502297 -57097486 - MIRb SINE MIR -76 192 99 6 1367 5070 65 5 2 chr3 102502770 102503414 -57096369 - L1_Mus1 LINE L1 0 6567 5922 7 1367 327 78 0 0 chr3 102504557 102504608 -57095175 + (CA)n Simple_repeat Simple_repeat 1 51 0 8 1367 272 224 52 5 chr3 102507059 102507140 -57092643 - MIR SINE MIR -79 129 39 9 1367 383 294 27 47 chr3 102507202 102507352 -57092431 + L2b LINE L2 3228 3374 -1 1 1367 1120 208 19 9 chr3 102507508 102507722 -57092061 - B3 SINE B2 0 216 1 1 1367 391 327 68 22 chr3 102508647 102508862 -57090921 + MLT1G3 LTR MaLR 1 274 -305 1 1367 976 281 81 55 chr3 102508936 102509283 -57090500 - MLT1A LTR MaLR 0 374 19 1 1367 513 270 108 0 chr3 102509300 102509485 -57090298 - L1M4 LINE L1 -2674 4332 4128 1 1367 315 0 0 0 chr3 102509492 102509527 -57090256 + (CA)n Simple_repeat Simple_repeat 2 36 0 1 1367 1476 289 101 17 chr3 102509539 102510082 -57089701 - L1M4 LINE L1 -3013 3993 3409 1 1367 985 246 24 34 chr3 102510082 102510377 -57089406 + B4A SINE B4 1 292 0 1 1367 1476 289 101 17 chr3 102510377 102510776 -57089007 - L1M4 LINE L1 -3598 3408 2972 1 1367 472 209 114 0 chr3 102511021 102511126 -57088657 + ID_B1 SINE B4 99 215 -9 1 1367 270 0 0 0 chr3 102511126 102511156 -57088627 + (TAAAA)n Simple_repeat Simple_repeat 2 31 0 1 1367 851 60 17 0 chr3 102511181 102511298 -57088485 + (GAAA)n Simple_repeat Simple_repeat 2 120 0 1 1367 382 321 103 22 chr3 102511343 102511791 -57087992 - L1M4 LINE L1 -4559 2449 1981 1 1367 806 177 7 13 chr3 102511950 102512099 -57087684 - B1_Mur2 SINE Alu -1 148 1 2 1367 403 310 127 13 chr3 102512107 102512414 -57087369 - L1M4 LINE L1 -5123 1781 1440 1 1367 417 153 0 0 chr3 102512414 102512486 -57087297 + T-rich Low_complexity Low_complexity 1 72 0 2 1367 201 320 23 23 chr3 102512891 102513022 -57086761 + GA-rich Low_complexity Low_complexity 2 132 0 2 1367 181 229 40 160 chr3 102513111 102513236 -57086547 + MIRm SINE MIR 34 143 -133 2 1367 382 168 98 45 chr3 102513291 102513403 -57086380 - Lx8 LINE L1 -2 7471 7354 2 1367 216 0 0 0 chr3 102513409 102513433 -57086350 + (TTTA)n Simple_repeat Simple_repeat 4 27 0 2 1367 888 236 19 0 chr3 102513445 102513606 -57086177 - B3 SINE B2 -52 164 1 2 1367 360 338 107 9 chr3 102513872 102514096 -57085687 - L1M4 LINE L1 -5768 1136 891 1 1367 894 285 53 113 chr3 102514337 102514773 -57085010 + MTE2a LTR MaLR 8 406 -13 2 1367 467 301 21 11 chr3 102514787 102514975 -57084808 - L1M4 LINE L1 -6337 567 378 1 1367 222 341 114 0 chr3 102515270 102515358 -57084425 + PB1 SINE Alu 11 108 -19 2 1367 273 125 0 0 chr3 102516297 102516353 -57083430 + (TTTG)n Simple_repeat Simple_repeat 1 56 0 2 1367 567 0 0 0 chr3 102517147 102517210 -57082573 + (TC)n Simple_repeat Simple_repeat 2 64 0 3 1367 396 0 0 0 chr3 102517211 102517255 -57082528 + (TG)n Simple_repeat Simple_repeat 1 44 0 3 1367 1095 168 77 0 chr3 102518328 102518537 -57081246 - URR1B DNA MER1_type 0 225 1 3 1367 187 280 54 36 chr3 102519762 102519873 -57079910 + MIR3 SINE MIR 1 113 -95 3 1367 317 253 13 30 chr3 102519949 102520055 -57079728 + MIRc SINE MIR 79 176 -32 3 1367 271 350 72 18 chr3 102520169 102520390 -57079393 - MIRc SINE MIR 0 268 36 3 1367 466 321 144 42 chr3 102520810 102521122 -57078661 - MER2 DNA MER2_type -1 344 1 3 1367 4208 58 46 11 chr3 102521312 102521853 -57077930 - LTRIS2 LTR ERV1 0 564 5 3 1367 760 323 44 53 chr3 102521926 102522004 -57077779 + MLT1A0 LTR MaLR 2 79 -329 3 1367 2957 85 6 82 chr3 102522004 102522493 -57077290 + RLTR11B LTR ERVK 2 453 0 3 1367 760 312 42 55 chr3 102522493 102522694 -57077089 + MLT1A0 LTR MaLR 79 281 -84 3 1367 1328 101 86 9 chr3 102522694 102522904 -57076879 - URR1A DNA MER1_type 0 226 1 4 1367 760 312 42 55 chr3 102522904 102522963 -57076820 + MLT1A0 LTR MaLR 282 337 -28 3 1367 233 281 11 79 chr3 102523435 102523524 -57076259 + ID4 SINE ID 1 83 0 4 1367 592 259 103 57 chr3 102524618 102524880 -57074903 + B4A SINE B4 2 275 -17 4 1367 264 59 0 0 chr3 102524933 102524967 -57074816 + (CA)n Simple_repeat Simple_repeat 1 34 0 4 1367 881 208 114 5 chr3 102525329 102525522 -57074261 + B3 SINE B2 1 214 -2 4 1367 344 192 269 0 chr3 102525541 102525645 -57074138 - MER2 DNA MER2_type -55 290 159 4 1367 377 230 146 73 chr3 102525664 102525870 -57073913 - MER2 DNA MER2_type -103 242 22 4 1367 663 296 131 20 chr3 102526586 102526838 -57072945 - MER2 DNA MER2_type -39 306 27 4 1367 26 0 0 0 chr3 102526864 102526890 -57072893 + AT_rich Low_complexity Low_complexity 1 26 0 4 1367 429 294 123 24 chr3 102527293 102527507 -57072276 + MLT2B4 LTR ERVL 303 515 -41 4 1367 528 214 93 8 chr3 102527681 102527799 -57071984 - RSINE1 SINE B4 -36 129 2 4 1367 180 176 0 0 chr3 102528109 102528143 -57071640 + A-rich Low_complexity Low_complexity 1 34 0 5 1367 464 326 0 22 chr3 102528505 102528766 -57071017 + (CATA)n Simple_repeat Simple_repeat 1 255 0 5 1367 270 0 0 0 chr3 102528780 102528810 -57070973 + (CA)n Simple_repeat Simple_repeat 2 31 0 5 1367 378 292 74 16 chr3 102529317 102529439 -57070344 + RSINE1 SINE B4 37 165 0 5 1367 2095 107 12 51 chr3 102529486 102529821 -57069962 + RLTRETN_Mm LTR ERVK 1 322 0 5 1367 3331 156 21 12 chr3 102530338 102530897 -57068886 - RLTR12A LTR ERVK -4 564 1 5 1367 1324 242 52 68 chr3 102530983 102531368 -57068415 - MTE2b LTR MaLR 0 379 1 5 1367 4540 55 5 4 chr3 102531631 102532192 -57067591 + L1_Mus2 LINE L1 6005 6566 0 5 1367 230 347 50 40 chr3 102532354 102532453 -57067330 + Charlie2b DNA MER1_type 219 318 -2464 5 1367 255 311 114 0 chr3 102532445 102532577 -57067206 + Charlie2b DNA MER1_type 1771 1917 -865 5 1367 643 205 30 30 chr3 102532581 102532705 -57067078 + B1_Mur1 SINE Alu 11 135 -14 5 1367 684 0 0 0 chr3 102532705 102532781 -57067002 + (GAA)n Simple_repeat Simple_repeat 3 78 0 6 1367 310 308 65 11 chr3 102532877 102532969 -57066814 + PB1D10 SINE Alu 7 103 -14 6 1367 254 29 29 0 chr3 102532970 102533005 -57066778 + (CAAA)n Simple_repeat Simple_repeat 3 38 0 6 1367 268 292 31 70 chr3 102533010 102533139 -57066644 + Charlie2b DNA MER1_type 2058 2181 -601 5 1367 848 277 122 52 chr3 102533148 102533867 -57065916 + L1MA5 LINE L1 5098 5938 -362 6 1367 916 80 29 34 chr3 102533878 102534232 -57065551 + (TG)n Simple_repeat Simple_repeat 1 351 0 6 1367 381 102 0 0 chr3 102534248 102534307 -57065476 + (TG)n Simple_repeat Simple_repeat 2 60 0 6 1367 977 286 68 57 chr3 102534573 102535121 -57064662 + Charlie2b DNA MER1_type 2166 2719 -63 5 1367 911 144 27 7 chr3 102535429 102535576 -57064207 + B1_Mur4 SINE Alu 1 150 0 6 1367 591 277 13 20 chr3 102535941 102536092 -57063691 + B3A SINE B2 5 154 -44 6 1367 462 49 0 0 chr3 102536092 102536153 -57063630 + (CA)n Simple_repeat Simple_repeat 1 61 0 6 1367 824 237 295 3 chr3 102536513 102536801 -57062982 + MTE2b LTR MaLR 5 376 -3 6 1367 253 229 305 0 chr3 102537111 102537229 -57062554 - Tigger8 DNA MER2_type -258 408 255 6 1367 335 256 103 8 chr3 102537329 102537455 -57062328 - MIR SINE MIR -31 231 94 7 1367 218 345 132 72 chr3 102537527 102537616 -57062167 + L2b LINE L2 3019 3095 -280 7 1367 1205 74 0 0 chr3 102537616 102537764 -57062019 - B1_Mus1 SINE Alu 0 148 1 7 1367 218 345 132 72 chr3 102537764 102538008 -57061775 + L2b LINE L2 3096 3372 -3 7 1367 24 77 0 0 chr3 102538833 102538885 -57060898 + GC_rich Low_complexity Low_complexity 1 52 0 7 1367 306 0 0 0 chr3 102540285 102540319 -57059464 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 7 1367 237 212 281 11 chr3 102540513 102540615 -57059168 - MIRb SINE MIR -96 172 40 7 1367 474 317 39 0 chr3 102540643 102540823 -57058960 + MER5A DNA MER1_type 1 187 -2 7 1367 192 262 0 0 chr3 102541448 102541490 -57058293 + MIRb SINE MIR 224 265 -3 7 1367 364 294 35 62 chr3 102541593 102541738 -57058045 + L2a LINE L2 3286 3426 0 7 1367 430 338 45 50 chr3 102543250 102543471 -57056312 + MIR SINE MIR 28 247 -15 7 1367 318 296 141 0 chr3 102543948 102544083 -57055700 - MER5A1 DNA MER1_type -4 162 9 8 1367 192 271 17 17 chr3 102544411 102544471 -57055312 + L3 LINE CR1 2156 2215 -2274 8 1367 252 246 35 0 chr3 102544472 102544529 -57055254 - MIRc SINE MIR -17 251 193 8 1367 208 216 174 61 chr3 102544555 102544650 -57055133 - MIR SINE MIR -76 192 88 8 1367 708 314 116 12 chr3 102544722 102544980 -57054803 + B4A SINE B4 1 285 -7 8 1367 206 211 0 0 chr3 102544985 102545023 -57054760 + (CA)n Simple_repeat Simple_repeat 2 39 0 8 1367 328 272 163 0 chr3 102545051 102545143 -57054640 + PB1D7 SINE Alu 14 120 0 8 1367 266 312 150 0 chr3 102545472 102545632 -57054151 - MIR SINE MIR -63 199 16 8 1367 425 312 63 31 chr3 102545689 102545848 -57053935 - MER3 DNA MER1_type 0 209 46 8 1367 506 303 74 88 chr3 102546254 102546471 -57053312 + B3A SINE B2 1 214 -2 8 1367 329 316 162 0 chr3 102547324 102547460 -57052323 + RSINE1 SINE B4 5 162 -3 8 1367 200 307 40 79 chr3 102548646 102548798 -57050985 - L2b LINE L2 -217 3158 3013 9 1367 465 19 0 0 chr3 102549088 102549142 -57050641 + (GA)n Simple_repeat Simple_repeat 1 54 0 9 1367 749 191 0 54 chr3 102549568 102549717 -57050066 - B1_Mur1 SINE Alu 0 149 9 9 1367 410 263 0 116 chr3 102549579 102549734 -57050049 - ID_B1 SINE B4 -9 215 79 9 1367 561 281 13 40 chr3 102549806 102549958 -57049825 + RSINE1 SINE B4 1 148 -17 9 1367 243 0 0 0 chr3 102552935 102552962 -57046821 + (A)n Simple_repeat Simple_repeat 1 27 0 9 1367 351 0 0 0 chr3 102553341 102553380 -57046403 + (CA)n Simple_repeat Simple_repeat 1 39 0 9 1367 269 286 30 30 chr3 102555024 102555125 -57044658 + MLT1K LTR MaLR 493 593 -2 9 1367 413 237 149 25 chr3 102555531 102555652 -57044131 - ID_B1 SINE B4 -12 212 77 9 1367 214 276 86 0 chr3 102555767 102555825 -57043958 + AluF_3 SINE Alu 137 199 -112 9 1367 792 290 81 7 chr3 102557557 102557866 -57041917 + MER2 DNA MER2_type 11 342 -3 1 1367 270 0 0 0 chr3 102557913 102557943 -57041840 + (CA)n Simple_repeat Simple_repeat 1 30 0 1 1367 225 306 0 0 chr3 102559411 102559483 -57040300 + MIRc SINE MIR 161 232 -36 1 1367 188 310 42 0 chr3 102560209 102560280 -57039503 + MIRm SINE MIR 91 164 -112 1 1367 27 0 0 0 chr3 102563401 102563428 -57036355 + AT_rich Low_complexity Low_complexity 1 27 0 1 1367 288 282 48 102 chr3 102563583 102563624 -57036159 + MIRb SINE MIR 1 35 -233 1 1367 2250 91 32 59 chr3 102563624 102563962 -57035821 - ORR1A4 LTR MaLR 0 329 1 1 1367 298 251 70 60 chr3 102563962 102564112 -57035671 + MIRc SINE MIR 35 181 -27 1 1367 502 257 144 7 chr3 102565975 102566128 -57033655 - B3A SINE B2 -24 174 1 1 1367 315 221 39 0 chr3 102566401 102566478 -57033305 - L2c LINE L2 -40 3347 3268 1 1367 917 283 16 0 chr3 102566975 102567219 -57032564 + B4A SINE B4 1 248 -44 1 1367 260 369 51 40 chr3 102569526 102569701 -57030082 + MIRb SINE MIR 33 209 -59 1 1367 759 254 106 34 chr3 102569899 102570107 -57029676 + ID_B1 SINE B4 1 223 -1 1 1367 2347 124 77 6 chr3 102570234 102570600 -57029183 - ORR1B1 LTR MaLR 0 394 3 1 1367 2493 126 80 0 chr3 102571001 102571389 -57028394 - MTC LTR MaLR -2 419 1 1 1367 252 94 0 72 chr3 102572090 102572159 -57027624 + T-rich Low_complexity Low_complexity 3 66 0 1 1367 1183 75 0 0 chr3 102572179 102572326 -57027457 - B1_Mus1 SINE Alu 0 148 2 1 1367 195 42 0 0 chr3 102573324 102573348 -57026435 + (TA)n Simple_repeat Simple_repeat 2 25 0 1 1367 420 287 87 0 chr3 102577243 102577358 -57022425 + RSINE1 SINE B4 28 152 -13 1 1367 210 87 65 0 chr3 102577360 102577406 -57022377 + GA-rich Low_complexity Low_complexity 2 50 0 1 1367 484 221 115 108 chr3 102577468 102577625 -57022158 + B3 SINE B2 28 191 -25 1 1367 525 263 35 35 chr3 102578090 102578232 -57021551 + ID_B1 SINE B4 80 221 -3 1 1367 257 290 53 88 chr3 102578644 102578814 -57020969 - MLT1K LTR MaLR -114 481 318 1 1367 186 43 0 0 chr3 102579194 102579217 -57020566 + (TA)n Simple_repeat Simple_repeat 2 24 0 1 1367 645 14 0 0 chr3 102581146 102581220 -57018563 + (CTCTG)n Simple_repeat Simple_repeat 1 74 0 1 1367 224 30 30 0 chr3 102581809 102581842 -57017941 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 1 1367 254 73 24 0 chr3 102583338 102583379 -57016404 + (TA)n Simple_repeat Simple_repeat 2 43 0 1 1367 542 252 15 30 chr3 102583453 102583588 -57016195 + RSINE1 SINE B4 4 136 -29 1 1367 612 214 45 34 chr3 102584713 102584892 -57014891 + B3A SINE B2 2 182 -16 1 1367 2904 6 0 15 chr3 102585138 102585468 -57014315 - L1Md_T LINE L1 0 6582 6258 1 1367 198 239 0 0 chr3 102585512 102585558 -57014225 + MIR SINE MIR 102 147 -61 1 1367 256 237 169 29 chr3 102587269 102587384 -57012399 + PB1D9 SINE Alu 6 112 -5 1 1367 5221 59 2 2 chr3 102587668 102588312 -57011471 + L1_Mus1 LINE L1 5924 6567 0 1 1367 271 338 71 60 chr3 102588383 102588635 -57011148 + L2c LINE L2 2917 3171 -216 1 1367 420 304 177 18 chr3 102588819 102589147 -57010636 - MER57C2 LTR ERV1 -11 423 44 1 1367 2886 212 90 45 chr3 102589259 102590044 -57009739 + Lx9 LINE L1 6824 7644 0 1 1367 225 179 0 0 chr3 102590272 102590311 -57009472 + GA-rich Low_complexity Low_complexity 2 40 0 1 1367 634 228 103 74 chr3 102590369 102590776 -57009007 + L1MEc LINE L1 781 1199 -5201 1 1367 23 0 0 0 chr3 102591766 102591789 -57007994 + AT_rich Low_complexity Low_complexity 1 23 0 1 1367 490 306 95 19 chr3 102592144 102592500 -57007283 + L1MB8 LINE L1 5603 5992 -2003 1 1367 289 289 235 7 chr3 102592669 102592805 -57006978 + MLT1C LTR MaLR 106 272 -195 1 1367 190 383 34 25 chr3 102593072 102593190 -57006593 + L2a LINE L2 3306 3424 -2 1 1367 936 232 9 22 chr3 102594380 102594605 -57005178 + MTE2b LTR MaLR 1 222 -157 1 1367 1892 113 48 51 chr3 102594600 102594935 -57004848 + MT2B LTR ERVL 49 382 -219 1 1367 357 333 96 8 chr3 102595119 102595370 -57004413 + L1MEc LINE L1 83 355 -6045 1 1367 1463 70 5 0 chr3 102595610 102595795 -57003988 + B2_Mm1a SINE B2 1 186 -7 1 1367 251 73 49 0 chr3 102595877 102595918 -57003865 + (CTTTG)n Simple_repeat Simple_repeat 2 44 0 1 1367 5448 207 65 12 chr3 102595995 102597184 -57002599 - Lx7 LINE L1 -202 7494 6243 1 1367 274 325 60 12 chr3 102597269 102597353 -57002430 + RSINE1 SINE B4 78 165 0 1 1367 22 70 0 0 chr3 102597364 102597407 -57002376 + AT_rich Low_complexity Low_complexity 1 43 0 1 1367 9661 70 25 12 chr3 102597844 102599038 -57000745 + L1_Mur1 LINE L1 4038 5256 -630 1 1367 1144 65 0 0 chr3 102599038 102599177 -57000606 + B1_Mus1 SINE Alu 1 139 -9 1 1367 225 0 0 0 chr3 102599177 102599202 -57000581 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 1 1367 9661 70 25 12 chr3 102599202 102599340 -57000443 + L1_Mur1 LINE L1 5257 5388 -498 1 1367 1087 295 127 8 chr3 102599326 102599719 -57000064 + Lx8 LINE L1 6886 7325 -148 1 1367 1273 93 35 0 chr3 102599723 102599895 -56999888 + B2_Mm1t SINE B2 2 179 -14 1 1367 440 89 313 26 chr3 102599973 102600088 -56999695 + B2_Mm2 SINE B2 47 194 -1 1 1367 250 156 30 45 chr3 102600154 102600221 -56999562 - ORR1E LTR MaLR -8 371 306 1 1367 225 0 0 0 chr3 102600221 102600246 -56999537 + (T)n Simple_repeat Simple_repeat 1 25 0 1 1367 973 239 47 70 chr3 102600246 102600547 -56999236 - ORR1E LTR MaLR -65 294 1 1 1367 11888 108 71 48 chr3 102600582 102600715 -56999068 + Lx3C LINE L1 3789 3915 -1971 1 1367 1354 62 39 11 chr3 102600715 102600896 -56998887 - B2_Mm2 SINE B2 -6 189 4 1 1367 11888 108 71 48 chr3 102600896 102601823 -56997960 + Lx3C LINE L1 3916 4916 -970 1 1367 387 0 0 0 chr3 102601823 102601866 -56997917 + (TATG)n Simple_repeat Simple_repeat 3 45 0 1 1367 11888 103 58 40 chr3 102601866 102602869 -56996914 + Lx3C LINE L1 4917 5898 -1078 1 1367 3492 25 5 0 chr3 102602869 102603263 -56996520 + MTA_Mm LTR MaLR 1 396 0 1 1367 8441 109 33 27 chr3 102603263 102604436 -56995347 + Lx3C LINE L1 5899 6992 -66 1 1367 25 51 0 0 chr3 102606022 102606061 -56993722 + AT_rich Low_complexity Low_complexity 1 39 0 1 1367 193 270 57 69 chr3 102606114 102606289 -56993494 + L2 LINE L2 2020 2192 -1227 1 1367 314 74 19 0 chr3 102606453 102606507 -56993276 + (TCTG)n Simple_repeat Simple_repeat 2 56 0 1 1367 378 0 0 0 chr3 102606510 102606552 -56993231 + (TG)n Simple_repeat Simple_repeat 1 42 0 1 1367 420 344 26 0 chr3 102606561 102606715 -56993068 - B3A SINE B2 -39 159 2 1 1367 1180 240 137 9 chr3 102606938 102607266 -56992517 - ORR1D2 LTR MaLR 0 370 1 1 1367 1114 90 7 0 chr3 102607395 102607540 -56992243 + B1_Mus2 SINE Alu 2 147 0 1 1367 300 19 77 0 chr3 102607543 102607595 -56992188 + (CAAAAA)n Simple_repeat Simple_repeat 5 60 0 1 1367 527 155 10 0 chr3 102608085 102608188 -56991595 + CT-rich Low_complexity Low_complexity 2 105 0 1 1367 1282 220 139 50 chr3 102608439 102608841 -56990942 - RMER10A LTR ERVL -4 438 1 1 1367 895 197 118 10 chr3 102609415 102609610 -56990173 + B3 SINE B2 1 216 0 1 1367 628 285 65 41 chr3 102609674 102610135 -56989648 + L1_Mur3 LINE L1 1244 1715 -4165 1 1367 4226 121 50 9 chr3 102610128 102610793 -56988990 + L1_Mur2 LINE L1 170 861 -5851 1 1367 3352 160 65 27 chr3 102610793 102611766 -56988017 + RLTR13D1 LTR ERVK 1 1013 -10 1 1367 5877 89 59 4 chr3 102611766 102612698 -56987085 + L1_Mur2 LINE L1 1230 2212 -3665 1 1367 747 186 39 57 chr3 102612783 102613144 -56986639 + L1VL4 LINE L1 663 1013 -5619 1 1367 1394 120 41 14 chr3 102613144 102613364 -56986419 + ORR1A2 LTR MaLR 102 327 0 1 1367 1189 197 0 14 chr3 102613372 102613583 -56986200 + ORR1A2-int LTR MaLR 772 979 -391 1 1367 427 167 83 0 chr3 102613585 102613669 -56986114 + MTB_Mm LTR MaLR 3 93 -314 1 1367 321 145 19 2 chr3 102613668 102613725 -56986058 + MTB_Mm LTR MaLR 194 265 -154 1 1367 1081 249 77 19 chr3 102613727 102614114 -56985669 - MT2A LTR ERVL -26 575 1 1 1367 555 293 140 31 chr3 102614118 102614467 -56985316 + Lx9 LINE L1 6973 7470 -174 1 1367 1613 215 68 90 chr3 102614644 102614770 -56985013 - MTD LTR MaLR 0 419 285 1 1367 1401 64 27 0 chr3 102614770 102614957 -56984826 + B2_Mm1a SINE B2 2 193 0 1 1367 1613 215 68 90 chr3 102614957 102615116 -56984667 - MTD LTR MaLR -135 284 116 1 1367 1490 171 20 24 chr3 102615116 102615409 -56984374 + Lx5 LINE L1 6751 7042 -8 1 1367 1613 215 68 90 chr3 102615409 102615546 -56984237 - MTD LTR MaLR -304 115 5 1 1367 772 79 302 0 chr3 102615582 102615721 -56984062 + B2_Mm2 SINE B2 1 181 -14 1 1367 36532 31 2 8 chr3 102615903 102621122 -56978661 + L1Md_T LINE L1 404 5586 -297 1 1367 8233 37 5 1 chr3 102621122 102622114 -56977669 + L1Md_T LINE L1 5587 6582 0 1 1367 183 272 270 69 chr3 102622136 102622369 -56977414 + L2 LINE L2 1827 2106 -1313 1 1367 29 47 0 0 chr3 102622427 102622470 -56977313 + AT_rich Low_complexity Low_complexity 1 43 0 1 1367 494 308 97 30 chr3 102623222 102623520 -56976263 - L1M4c LINE L1 -6044 340 23 1 1367 245 247 80 27 chr3 102623551 102623626 -56976157 - ID4_ SINE ID -3 80 2 1 1367 1072 57 0 0 chr3 102623686 102623827 -56975956 + B1_Mus1 SINE Alu 7 147 -1 1 1367 336 283 98 0 chr3 102624642 102624734 -56975049 + B1F1 SINE Alu 8 108 -41 1 1367 283 309 52 43 chr3 102624734 102624757 -56975026 + ID_B1 SINE B4 89 204 -20 1 1367 1158 62 7 0 chr3 102625031 102625177 -56974606 + B1_Mm SINE Alu 1 147 0 1 1367 195 42 0 0 chr3 102625177 102625201 -56974582 + (CAAAA)n Simple_repeat Simple_repeat 3 26 0 1 1367 1546 48 0 0 chr3 102625257 102625443 -56974340 + B2_Mm1a SINE B2 3 188 -5 1 1367 533 252 37 0 chr3 102625452 102625587 -56974196 + L1M4 LINE L1 4 143 -6399 1 1367 1148 48 7 27 chr3 102625755 102625905 -56973878 + B1_Mm SINE Alu 1 147 0 1 1367 637 281 12 35 chr3 102626523 102626696 -56973087 + B3 SINE B2 48 216 0 1 1367 556 245 50 91 chr3 102626669 102626911 -56972872 - Charlie1b DNA MER1_type -187 336 105 1 1367 513 234 36 0 chr3 102626963 102627074 -56972709 + PB1D10 SINE Alu 3 117 0 2 1367 7079 99 22 43 chr3 102627966 102629086 -56970697 - Lx LINE L1 -7 6647 5548 2 170 4690 144 3 42 chr3 102629112 102629760 -56970023 + L1_Mm LINE L1 4723 5355 -528 2 1368 3847 88 16 11 chr3 102629760 102630311 -56969472 + L1_Mus4 LINE L1 6079 6632 -4 2 1368 4690 144 3 42 chr3 102630311 102630516 -56969267 + L1_Mm LINE L1 5356 5543 -340 2 1368 27 87 0 0 chr3 102631331 102631400 -56968383 + AT_rich Low_complexity Low_complexity 1 69 0 2 1368 485 310 128 42 chr3 102631507 102631959 -56967824 + L1M4c LINE L1 2096 2589 -3793 2 1368 613 241 27 7 chr3 102632229 102632375 -56967408 + B1_Mur3 SINE Alu 1 149 0 2 1368 957 128 0 6 chr3 102632442 102632607 -56967176 + L1Md_A LINE L1 620 783 -5941 2 1368 10165 45 0 16 chr3 102632605 102634418 -56965365 + L1Md_F3 LINE L1 4604 6393 -191 2 1368 1062 97 7 7 chr3 102634926 102635081 -56964702 + B2_Mm1t SINE B2 2 156 -37 2 1368 270 0 0 0 chr3 102635081 102635111 -56964672 + (TAAA)n Simple_repeat Simple_repeat 4 33 0 2 1368 297 245 19 19 chr3 102635111 102635126 -56964657 + L1M4c LINE L1 3165 3181 -3198 2 1368 1484 55 5 29 chr3 102635126 102635334 -56964449 + L1Md_F3 LINE L1 6381 6583 -1 2 1368 297 245 19 19 chr3 102635334 102635422 -56964361 + L1M4c LINE L1 3182 3268 -3111 2 1368 312 50 0 0 chr3 102635431 102635471 -56964312 + B2_Mm2 SINE B2 2 41 -154 2 1368 229 26 53 0 chr3 102635969 102636007 -56963776 + (TTG)n Simple_repeat Simple_repeat 3 42 0 2 1368 1021 103 45 8 chr3 102636009 102636170 -56963613 + B2_Mm2 SINE B2 18 181 -14 2 1368 309 304 41 65 chr3 102636194 102636317 -56963466 + PB1D7 SINE Alu 1 120 0 2 1368 278 279 159 8 chr3 102636326 102636546 -56963237 + L1MD3 LINE L1 7600 7874 -121 2 1368 216 0 0 0 chr3 102636561 102636585 -56963198 + (A)n Simple_repeat Simple_repeat 1 24 0 2 1368 35349 35 1 0 chr3 102636589 102642261 -56957522 + L1Md_T LINE L1 1 5589 -297 2 1368 8945 7 0 0 chr3 102642261 102643257 -56956526 + L1Md_T LINE L1 5590 6585 0 2 1368 1352 90 12 97 chr3 102643668 102643915 -56955868 - Lx2 LINE L1 -84 6913 6688 2 1368 366 141 0 14 chr3 102643909 102643981 -56955802 + Lx LINE L1 6507 6577 -77 2 1368 328 417 49 6 chr3 102644004 102644168 -56955615 + LTR16A LTR ERVL 234 404 -47 2 1368 697 204 30 0 chr3 102644259 102644391 -56955392 + B1_Mur3 SINE Alu 13 148 -1 2 1368 335 322 26 40 chr3 102644260 102644412 -56955371 + B4A SINE B4 99 248 -44 2 1368 23 0 0 0 chr3 102644737 102644760 -56955023 + AT_rich Low_complexity Low_complexity 1 23 0 2 1368 265 314 29 0 chr3 102645366 102645436 -56954347 - ID4 SINE ID -10 73 2 2 1368 252 0 0 0 chr3 102645586 102645614 -56954169 + (CA)n Simple_repeat Simple_repeat 2 29 0 2 1368 841 219 43 14 chr3 102645708 102645916 -56953867 + B3 SINE B2 3 216 0 2 1368 396 55 0 0 chr3 102645919 102645974 -56953809 + (GGAA)n Simple_repeat Simple_repeat 4 58 0 2 1368 6414 42 10 1 chr3 102646597 102647388 -56952395 + L1Md_F2 LINE L1 5784 6581 -1 2 1368 252 342 109 7 chr3 102647549 102647696 -56952087 - MIR SINE MIR -15 247 86 2 1368 22 0 0 0 chr3 102647937 102647959 -56951824 + AT_rich Low_complexity Low_complexity 1 22 0 2 1368 23 68 0 0 chr3 102648373 102648417 -56951366 + AT_rich Low_complexity Low_complexity 1 44 0 2 1368 386 242 59 20 chr3 102648425 102648526 -56951257 + RSINE1 SINE B4 25 129 -36 2 1368 582 103 0 0 chr3 102648546 102648633 -56951150 + (CA)n Simple_repeat Simple_repeat 2 88 0 2 1368 793 217 96 45 chr3 102649612 102649749 -56950034 + MTD LTR MaLR 3 156 -263 2 1368 2582 133 35 57 chr3 102649749 102650242 -56949541 + RLTR45 LTR ERVK 1 482 0 2 1368 793 217 96 45 chr3 102650242 102650302 -56949481 + MTD LTR MaLR 157 210 -209 2 1368 1899 59 0 0 chr3 102650302 102650539 -56949244 - L1_Mm LINE L1 -338 5545 5309 2 1368 7458 67 4 8 chr3 102650562 102651539 -56948244 + L1_Mus1 LINE L1 5587 6559 -8 2 1368 654 13 0 0 chr3 102651549 102651624 -56948159 + (GGAAA)n Simple_repeat Simple_repeat 1 75 0 2 1368 662 207 177 25 chr3 102651624 102651811 -56947972 + MTD LTR MaLR 203 421 0 2 1368 236 128 26 0 chr3 102652657 102652696 -56947087 + RLTR9A LTR ERVK 1 40 -328 2 1368 501 119 60 0 chr3 102652855 102652939 -56946844 + RLTR9A LTR ERVK 280 368 0 2 1368 3129 56 5 10 chr3 102653209 102653607 -56946176 - MTA_Mm LTR MaLR 0 396 1 2 1368 2888 62 5 0 chr3 102653856 102654228 -56945555 + L1_Mus2 LINE L1 6149 6522 -44 2 1368 323 154 15 0 chr3 102654356 102654421 -56945362 + (TA)n Simple_repeat Simple_repeat 2 67 0 2 1368 201 360 58 0 chr3 102654545 102654631 -56945152 + MIRb SINE MIR 29 119 -149 2 1368 584 229 66 66 chr3 102654882 102655078 -56944705 - B3A SINE B2 -1 197 2 2 1368 1086 141 11 16 chr3 102655142 102655330 -56944453 + B2_Mm2 SINE B2 2 188 -7 2 1368 278 323 57 29 chr3 102656350 102656459 -56943324 + B1F SINE Alu 1 109 -11 2 1368 302 336 81 32 chr3 102656471 102656594 -56943189 + L1MC5 LINE L1 6734 6862 -1099 2 1368 37 81 0 0 chr3 102657583 102657669 -56942114 + AT_rich Low_complexity Low_complexity 1 86 0 2 1368 921 114 0 0 chr3 102657775 102657907 -56941876 - B1_Mur4 SINE Alu 0 150 19 2 1368 327 49 0 0 chr3 102657907 102657948 -56941835 + (CACCAT)n Simple_repeat Simple_repeat 1 41 0 2 1368 1637 110 8 0 chr3 102658677 102658932 -56940851 - L1_Mur1 LINE L1 -3706 2180 1924 2 1368 31485 97 46 5 chr3 102658983 102660506 -56939277 + L1_Mus1 LINE L1 613 2190 -3693 2 1368 5074 27 0 2 chr3 102660506 102661102 -56938681 - L1Md_F3 LINE L1 0 6584 5990 2 1368 31485 92 27 6 chr3 102661102 102665443 -56934340 + L1_Mus1 LINE L1 2191 6567 0 2 1368 2002 212 124 2 chr3 102665565 102666048 -56933735 - Lx9 LINE L1 -8 7636 7095 2 1368 283 272 70 0 chr3 102666165 102666279 -56933504 - L1MEf LINE L1 -4526 1674 1553 2 1368 351 352 35 48 chr3 102666578 102666805 -56932978 + Lx8 LINE L1 7248 7471 -2 2 1368 1203 41 0 0 chr3 102667300 102667446 -56932337 - B1_Mus2 SINE Alu 0 147 2 2 1368 3560 229 43 18 chr3 102667518 102668361 -56931422 + Lx7 LINE L1 6568 7431 -265 2 1368 26 50 0 0 chr3 102668457 102668497 -56931286 + AT_rich Low_complexity Low_complexity 1 40 0 2 1368 22 0 0 0 chr3 102669062 102669084 -56930699 + AT_rich Low_complexity Low_complexity 1 22 0 2 1368 56 39 0 0 chr3 102669226 102669303 -56930480 + AT_rich Low_complexity Low_complexity 1 77 0 2 1368 4724 92 22 28 chr3 102669411 102670102 -56929681 + L1VL2 LINE L1 476 1162 -5472 2 1368 35575 46 0 3 chr3 102670107 102675545 -56924238 + L1Md_T LINE L1 73 5589 -297 2 1368 8496 28 1 0 chr3 102675545 102676540 -56923243 + L1Md_T LINE L1 5590 6585 0 2 1368 21 0 0 0 chr3 102676562 102676583 -56923200 + AT_rich Low_complexity Low_complexity 1 21 0 2 1368 8290 99 72 12 chr3 102676583 102678329 -56921454 + L1VL2 LINE L1 1150 3293 -2593 2 1368 237 180 0 20 chr3 102678416 102678467 -56921316 - L1_Mur3 LINE L1 -966 4914 4865 2 1368 232 278 79 28 chr3 102678762 102678940 -56920843 + RMER17C LTR ERVK 88 274 -136 2 1368 578 254 45 0 chr3 102679324 102679458 -56920325 + B1_Mur2 SINE Alu 4 143 -6 2 1368 24 0 0 0 chr3 102679509 102679533 -56920250 + AT_rich Low_complexity Low_complexity 1 24 0 2 1368 678 235 109 73 chr3 102680049 102680214 -56919569 + B3 SINE B2 5 175 -20 2 1368 2124 170 56 2 chr3 102680546 102680941 -56918842 + Lx3C LINE L1 6554 6969 -7 2 1368 898 132 40 0 chr3 102680962 102681113 -56918670 + L1_Mur1 LINE L1 4428 4584 -1302 2 1368 27 0 0 0 chr3 102681114 102681141 -56918642 + AT_rich Low_complexity Low_complexity 1 27 0 2 1368 1707 201 48 104 chr3 102681462 102682001 -56917782 + RLTR11A LTR ERVK 20 528 0 2 1368 898 222 72 0 chr3 102682063 102682257 -56917526 + B3 SINE B2 1 208 -8 2 1368 643 321 59 16 chr3 102682370 102682557 -56917226 - B3 SINE B2 -21 195 1 2 1368 23 86 0 0 chr3 102683276 102683334 -56916449 + AT_rich Low_complexity Low_complexity 1 58 0 2 1368 6617 80 40 15 chr3 102683460 102684466 -56915317 + Lx3_Mus LINE L1 1191 2218 -3668 2 1368 1057 70 28 0 chr3 102684469 102684612 -56915171 + B1_Mm SINE Alu 1 147 0 2 1368 216 86 0 0 chr3 102685798 102685833 -56913950 + (GGAA)n Simple_repeat Simple_repeat 4 38 0 2 1368 20522 88 95 13 chr3 102685833 102690235 -56909548 + Lx3_Mus LINE L1 2216 7001 -8 2 1368 31 44 0 0 chr3 102690235 102690280 -56909503 + AT_rich Low_complexity Low_complexity 1 45 0 2 1368 36002 49 8 4 chr3 102690668 102695981 -56903802 + L1Md_T LINE L1 290 5586 -297 2 1368 8539 28 0 0 chr3 102695981 102696977 -56902806 + L1Md_T LINE L1 5587 6582 0 2 1368 22 80 0 0 chr3 102696997 102697047 -56902736 + AT_rich Low_complexity Low_complexity 1 50 0 2 1368 25 65 0 0 chr3 102697111 102697157 -56902626 + AT_rich Low_complexity Low_complexity 1 46 0 2 1368 27 73 0 0 chr3 102697290 102697345 -56902438 + AT_rich Low_complexity Low_complexity 1 55 0 2 1368 1310 249 95 15 chr3 102697661 102698021 -56901762 + MTD LTR MaLR 1 352 -67 2 1368 588 226 66 40 chr3 102698039 102698237 -56901546 - RMER20B LTR ERVK -191 436 234 2 1368 1251 82 0 0 chr3 102699075 102699246 -56900537 + L1_Mus1 LINE L1 6397 6567 0 2 1368 3537 15 0 0 chr3 102699315 102699711 -56900072 + MTA_Mm LTR MaLR 1 396 0 2 1368 315 276 169 16 chr3 102699898 102700082 -56899701 + L1MC5 LINE L1 7711 7922 -39 2 1368 44 46 0 0 chr3 102700463 102700528 -56899255 + AT_rich Low_complexity Low_complexity 1 65 0 2 1368 580 72 24 0 chr3 102700552 102700635 -56899148 - B1_Mus2 SINE Alu -3 144 60 2 1368 452 286 0 0 chr3 102700740 102700838 -56898945 - B1F SINE Alu -42 107 10 2 1368 33 43 0 0 chr3 102700989 102701036 -56898747 + AT_rich Low_complexity Low_complexity 1 47 0 2 1368 4512 108 20 19 chr3 102701036 102701740 -56898043 - Lx LINE L1 -7 6647 5943 2 1368 2821 54 0 3 chr3 102701740 102702092 -56897691 + Lx LINE L1 5592 5942 -712 2 1368 732 294 124 19 chr3 102702192 102702459 -56897324 + MER2 DNA MER2_type 25 319 -26 2 1368 26 0 0 0 chr3 102702501 102702527 -56897256 + AT_rich Low_complexity Low_complexity 1 26 0 2 1368 400 260 0 0 chr3 102702579 102702652 -56897131 - PB1D10 SINE Alu -44 73 1 2 1368 560 191 118 8 chr3 102702950 102703077 -56896706 + B1_Mur2 SINE Alu 2 142 -7 2 1368 28 0 0 0 chr3 102703149 102703177 -56896606 + AT_rich Low_complexity Low_complexity 1 28 0 3 1368 1101 114 80 6 chr3 102703178 102703354 -56896429 + B2_Mm2 SINE B2 1 189 -6 3 1368 1163 95 65 0 chr3 102703365 102703534 -56896249 - B2_Mm2 SINE B2 -15 180 1 3 1368 478 266 36 18 chr3 102703545 102703656 -56896127 - ID_B1 SINE B4 -7 217 105 3 1368 400 313 80 44 chr3 102703656 102703682 -56896101 - B1F SINE Alu -7 142 1 3 1368 1213 48 0 0 chr3 102703746 102703893 -56895890 + B1_Mus2 SINE Alu 1 147 0 3 1368 258 156 0 0 chr3 102703893 102703938 -56895845 + A-rich Low_complexity Low_complexity 1 45 0 3 1368 1158 190 47 8 chr3 102704151 102704406 -56895377 + L1VL2 LINE L1 131 395 -5940 3 1368 233 111 0 0 chr3 102704410 102704446 -56895337 + L1VL2 LINE L1 191 226 -6109 3 1368 17785 158 31 23 chr3 102704446 102708509 -56891274 + L1VL2 LINE L1 308 4408 -1478 3 1368 3512 8 5 0 chr3 102708509 102708903 -56890880 + MTA_Mm LTR MaLR 1 396 0 3 1368 9332 21 7 0 chr3 102708903 102709993 -56889790 + MTA_Mm-int LTR MaLR 1 1098 0 3 1368 3512 8 5 0 chr3 102709993 102710387 -56889396 + MTA_Mm LTR MaLR 1 396 0 3 1368 17785 156 29 12 chr3 102710387 102710633 -56889150 + L1VL2 LINE L1 4409 4650 -1236 3 1368 659 210 42 35 chr3 102710655 102710798 -56888985 + B3 SINE B2 71 214 -2 3 1368 1119 68 0 0 chr3 102710849 102710996 -56888787 + B1_Mus1 SINE Alu 2 148 0 3 1368 978 267 56 26 chr3 102711245 102711549 -56888234 + Lx8 LINE L1 6502 6814 -659 3 1368 732 322 57 22 chr3 102711676 102712080 -56887703 + L1M2 LINE L1 2290 2707 -3436 3 1368 1402 260 27 2 chr3 102712087 102712500 -56887283 + L1M2 LINE L1 3615 4037 -2106 3 1368 304 316 21 0 chr3 102712981 102713076 -56886707 + RMER15-int LTR ERVL 4604 4700 -299 3 1368 1172 41 20 7 chr3 102713886 102714033 -56885750 - B1_Mur4 SINE Alu -1 149 1 3 1368 272 238 306 16 chr3 102714085 102714209 -56885574 - B2_Mm1t SINE B2 -8 185 26 3 1368 2224 91 10 16 chr3 102714459 102714773 -56885010 + Lx3_Mus LINE L1 6698 7009 0 3 1368 226 174 0 42 chr3 102715317 102715389 -56884394 + (TTGG)n Simple_repeat Simple_repeat 3 71 0 3 1368 679 228 29 0 chr3 102715418 102715554 -56884229 - B1_Mus1 SINE Alu -2 146 7 3 1368 682 168 9 0 chr3 102715568 102715681 -56884102 - B1_Mur2 SINE Alu -3 146 33 3 1368 234 0 0 0 chr3 102715945 102715971 -56883812 + (TC)n Simple_repeat Simple_repeat 1 26 0 3 1368 288 0 0 0 chr3 102715971 102716002 -56883781 + (CA)n Simple_repeat Simple_repeat 1 32 0 3 1368 27 49 0 0 chr3 102716123 102716164 -56883619 + AT_rich Low_complexity Low_complexity 1 41 0 3 1368 35 41 0 0 chr3 102716269 102716318 -56883465 + AT_rich Low_complexity Low_complexity 1 49 0 3 1368 608 273 0 0 chr3 102716609 102716741 -56883042 + B1F2 SINE Alu 1 132 -17 3 1368 403 280 65 0 chr3 102716779 102716872 -56882911 + PB1D10 SINE Alu 12 110 -7 3 1368 671 308 82 0 chr3 102717068 102717250 -56882533 - B3 SINE B2 0 216 20 3 1368 21 36 0 0 chr3 102717283 102717311 -56882472 + AT_rich Low_complexity Low_complexity 1 28 0 3 1368 22 35 0 0 chr3 102717419 102717448 -56882335 + AT_rich Low_complexity Low_complexity 1 29 0 3 1368 21 36 0 0 chr3 102717553 102717581 -56882202 + AT_rich Low_complexity Low_complexity 1 28 0 3 1368 735 163 50 29 chr3 102717627 102717766 -56882017 + B1_Mus1 SINE Alu 7 148 0 3 1368 528 266 134 21 chr3 102717830 102717972 -56881811 + RSINE1 SINE B4 8 165 0 3 1368 1146 174 46 5 chr3 102717992 102718189 -56881594 + B3 SINE B2 1 205 -11 3 1368 23 68 0 0 chr3 102718190 102718234 -56881549 + AT_rich Low_complexity Low_complexity 1 44 0 3 1368 22 0 0 0 chr3 102718260 102718282 -56881501 + AT_rich Low_complexity Low_complexity 1 22 0 3 1368 749 141 215 5 chr3 102718713 102718899 -56880884 + URR1B DNA MER1_type 1 225 0 3 1368 22 0 0 0 chr3 102720279 102720301 -56879482 + GC_rich Low_complexity Low_complexity 1 22 0 3 1368 380 284 73 9 chr3 102720700 102720810 -56878973 - B1F SINE Alu -29 120 4 3 1368 279 0 0 0 chr3 102721331 102721362 -56878421 + (TG)n Simple_repeat Simple_repeat 2 32 0 3 1368 242 316 225 36 chr3 102721376 102721514 -56878269 - RSINE1 SINE B4 0 165 2 3 1368 2723 148 121 8 chr3 102721648 102722160 -56877623 + Lx2B LINE L1 6428 6997 -3 3 1368 551 257 90 127 chr3 102722221 102722405 -56877378 - ORR1D1 LTR MaLR -1 373 162 3 1368 776 150 176 18 chr3 102722489 102722659 -56877124 - ORR1D1 LTR MaLR -177 197 1 3 1368 658 272 139 16 chr3 102722660 102722854 -56876929 + B4 SINE B4 1 218 -74 3 1368 482 215 19 0 chr3 102722924 102723038 -56876745 + B1_Mus2 SINE Alu 1 120 0 3 1368 1069 113 96 0 chr3 102723043 102723220 -56876563 + B2_Mm2 SINE B2 1 194 -1 3 1368 216 330 0 84 chr3 102723572 102723691 -56876092 - L2a LINE L2 0 3426 3318 3 1368 216 0 0 0 chr3 102723707 102723731 -56876052 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 3 1368 961 269 127 35 chr3 102723738 102724084 -56875699 + MTD LTR MaLR 42 419 0 3 1368 22 0 0 0 chr3 102724561 102724583 -56875200 + AT_rich Low_complexity Low_complexity 1 22 0 3 1368 22 56 0 0 chr3 102724633 102724669 -56875114 + AT_rich Low_complexity Low_complexity 1 36 0 3 1368 415 248 146 8 chr3 102725015 102725145 -56874638 - B1_Mur1 SINE Alu -1 148 1 3 1368 533 248 14 47 chr3 102725233 102725381 -56874402 + B1_Mur2 SINE Alu 1 143 -6 3 1368 369 0 0 0 chr3 102726007 102726048 -56873735 + (TG)n Simple_repeat Simple_repeat 2 42 0 3 1368 357 208 0 50 chr3 102726168 102726269 -56873514 + L1MA6 LINE L1 6186 6281 -19 3 1368 35 0 0 0 chr3 102727286 102727321 -56872462 + AT_rich Low_complexity Low_complexity 1 35 0 3 1368 195 42 0 0 chr3 102727634 102727658 -56872125 + (TTCA)n Simple_repeat Simple_repeat 1 24 0 3 1368 834 164 30 0 chr3 102727992 102728126 -56871657 + B1_Mur3 SINE Alu 3 140 -9 3 1368 346 189 22 11 chr3 102728144 102728235 -56871548 + GA-rich Low_complexity Low_complexity 2 93 0 3 1368 403 348 96 34 chr3 102728462 102728670 -56871113 + B4A SINE B4 1 221 -71 3 1368 30 0 0 0 chr3 102729001 102729031 -56870752 + AT_rich Low_complexity Low_complexity 1 30 0 3 1368 473 279 92 79 chr3 102729331 102729623 -56870160 + L1MCa LINE L1 5 300 -6208 3 1368 313 365 70 0 chr3 102729668 102729783 -56870000 + L1MCa LINE L1 395 517 -5991 3 1368 233 208 0 50 chr3 102729892 102729993 -56869790 + GA-rich Low_complexity Low_complexity 5 100 0 3 1368 316 221 248 79 chr3 102730002 102730107 -56869676 + L1MCa LINE L1 555 673 -5835 3 1368 205 51 51 0 chr3 102730107 102730146 -56869637 + (CAA)n Simple_repeat Simple_repeat 3 43 0 3 1368 316 221 248 79 chr3 102730146 102730330 -56869453 + L1MCa LINE L1 674 892 -5616 3 1368 22 0 0 0 chr3 102730337 102730359 -56869424 + AT_rich Low_complexity Low_complexity 1 22 0 3 1368 542 203 43 11 chr3 102730435 102730619 -56869164 + L1MCa LINE L1 1261 1450 -5058 3 1368 202 209 70 0 chr3 102730620 102730706 -56869077 + A-rich Low_complexity Low_complexity 1 92 0 3 1368 429 236 11 33 chr3 102730762 102730854 -56868929 + RSINE1 SINE B4 76 165 0 3 1368 417 222 125 0 chr3 102730877 102731021 -56868762 + L1MCa LINE L1 1651 1812 -4696 3 1368 397 188 0 0 chr3 102731050 102731114 -56868669 - ID4 SINE ID -18 65 2 3 1368 352 314 9 19 chr3 102731506 102731613 -56868170 - PB1D10 SINE Alu -9 108 3 3 1368 792 158 43 14 chr3 102732260 102732401 -56867382 + B1_Mur4 SINE Alu 1 145 -5 3 1368 2400 97 76 59 chr3 102732516 102732922 -56866861 + Lx LINE L1 6240 6652 -2 3 1368 1201 68 0 0 chr3 102732925 102733072 -56866711 + B1_Mus1 SINE Alu 2 148 0 3 1368 1426 183 108 10 chr3 102733594 102733908 -56865875 - MTD LTR MaLR 0 419 75 3 1368 1137 128 0 0 chr3 102733944 102734124 -56865659 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 3 1368 1117 75 7 0 chr3 102734187 102734333 -56865450 + B1_Mus1 SINE Alu 2 148 0 3 1368 326 208 58 18 chr3 102734918 102735089 -56864694 + (TA)n Simple_repeat Simple_repeat 1 178 0 3 1368 210 239 32 11 chr3 102735023 102735116 -56864667 + (TATAA)n Simple_repeat Simple_repeat 3 97 0 3 1368 275 293 0 26 chr3 102735803 102735880 -56863903 + PB1D10 SINE Alu 37 111 -6 3 1368 524 336 29 0 chr3 102735893 102736033 -56863750 + RSINE1 SINE B4 10 153 -12 3 1368 223 346 0 80 chr3 102737186 102737274 -56862509 - ID4 SINE ID 0 83 3 3 1368 1710 44 9 9 chr3 102737507 102737735 -56862048 + L1_Mus3 LINE L1 6406 6633 -5 3 1368 30 0 0 0 chr3 102737818 102737848 -56861935 + AT_rich Low_complexity Low_complexity 1 30 0 3 1368 272 288 0 17 chr3 102738322 102738382 -56861401 + RSINE1 SINE B4 107 165 0 3 1368 180 0 0 0 chr3 102739178 102739198 -56860585 + (A)n Simple_repeat Simple_repeat 1 20 0 3 1368 516 245 62 41 chr3 102740267 102740412 -56859371 - B3 SINE B2 -22 194 47 3 1368 2182 259 97 65 chr3 102741024 102741822 -56857961 - MTE-int LTR MaLR -463 1117 295 3 1368 205 274 0 0 chr3 102741899 102741961 -56857822 + T-rich Low_complexity Low_complexity 1 62 0 3 1368 1389 210 59 54 chr3 102742795 102743167 -56856616 + ORR1D1 LTR MaLR 1 374 0 3 1368 403 202 22 22 chr3 102743292 102743383 -56856400 + RSINE1 SINE B4 74 164 -1 3 1368 700 281 90 20 chr3 102743399 102743796 -56855987 + L1MA5 LINE L1 5476 5896 -404 3 1368 1332 103 0 0 chr3 102743819 102744004 -56855779 + L1_Mus2 LINE L1 6380 6564 -2 3 1368 335 295 104 9 chr3 102744472 102744578 -56855205 - PB1D10 SINE Alu -1 116 1 3 1368 258 350 14 14 chr3 102745175 102745317 -56854466 - MIR SINE MIR -48 214 73 3 1368 813 194 100 0 chr3 102745621 102745801 -56853982 + B3 SINE B2 5 202 -14 3 1368 613 349 143 18 chr3 102746125 102746190 -56853593 - L2 LINE L2 -449 2970 2900 3 1368 1461 58 11 5 chr3 102746190 102746380 -56853403 - B2_Mm2 SINE B2 -4 191 1 3 1368 613 349 143 18 chr3 102746380 102746944 -56852839 - L2 LINE L2 -520 2899 2263 3 1368 406 198 104 35 chr3 102746954 102747069 -56852714 + B3 SINE B2 87 209 -7 3 1368 229 386 52 15 chr3 102747077 102747211 -56852572 - L2 LINE L2 -1171 2248 2110 3 1368 558 243 93 0 chr3 102747218 102747358 -56852425 + RSINE1 SINE B4 5 157 -8 3 1368 1470 30 0 0 chr3 102747361 102747599 -56852184 + (TAGA)n Simple_repeat Simple_repeat 1 238 0 3 1368 243 0 0 0 chr3 102747659 102747686 -56852097 + (TTTTTG)n Simple_repeat Simple_repeat 4 30 0 4 1368 335 327 111 21 chr3 102748752 102749077 -56850706 - L2 LINE L2 -1344 2075 1722 3 1368 243 0 0 0 chr3 102750257 102750284 -56849499 + (A)n Simple_repeat Simple_repeat 1 27 0 4 1368 795 270 42 49 chr3 102750953 102751261 -56848522 + Lx8 LINE L1 7168 7473 0 4 1368 379 280 84 15 chr3 102751390 102751593 -56848190 + ID_B1 SINE B4 3 219 -5 4 1368 207 0 0 0 chr3 102751792 102751815 -56847968 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 4 1368 255 249 42 115 chr3 102752238 102752334 -56847449 - ID4 SINE ID -61 91 1 4 1368 1077 91 6 13 chr3 102752386 102752542 -56847241 + B2_Mm1t SINE B2 1 155 -38 4 1368 358 124 12 34 chr3 102752583 102752649 -56847134 + B2_Mm2 SINE B2 46 115 -83 4 1368 396 0 0 0 chr3 102752659 102752703 -56847080 + (TAAA)n Simple_repeat Simple_repeat 4 47 0 4 1368 738 239 52 33 chr3 102752719 102752931 -56846852 + B3 SINE B2 1 216 0 4 1368 24 0 0 0 chr3 102753072 102753096 -56846687 + AT_rich Low_complexity Low_complexity 1 24 0 4 1368 340 282 117 75 chr3 102753991 102754179 -56845604 - B3 SINE B2 -1 215 20 4 1368 224 329 0 54 chr3 102754372 102754446 -56845337 + PB1 SINE Alu 5 74 -53 4 1368 257 261 72 0 chr3 102754478 102754547 -56845236 + ID4_ SINE ID 1 74 -9 4 1368 297 216 9 29 chr3 102754566 102754671 -56845112 + GA-rich Low_complexity Low_complexity 2 104 0 4 1368 543 137 84 0 chr3 102754942 102755037 -56844746 + B1F2 SINE Alu 31 133 -16 4 1368 755 211 119 0 chr3 102755424 102755609 -56844174 - B3 SINE B2 -5 211 5 4 1368 38 22 0 0 chr3 102755827 102755872 -56843911 + AT_rich Low_complexity Low_complexity 1 45 0 4 1368 752 220 18 25 chr3 102755872 102756035 -56843748 - U1 snRNA snRNA -2 163 2 4 1368 228 268 121 26 chr3 102757139 102757242 -56842541 - ID2 SINE ID -46 106 2 4 1368 756 211 0 0 chr3 102757599 102757746 -56842037 + B1_Mur2 SINE Alu 1 147 -2 4 1368 226 338 0 0 chr3 102757746 102757817 -56841966 + GA-rich Low_complexity Low_complexity 1 71 0 4 1368 815 209 0 0 chr3 102757821 102757960 -56841823 + B1_Mur1 SINE Alu 3 141 -8 4 1368 494 168 10 0 chr3 102757962 102757978 -56841805 + polypurine Low_complexity Low_complexity 3 18 0 4 1368 1194 94 0 0 chr3 102757978 102758148 -56841635 + (GAAA)n Simple_repeat Simple_repeat 1 170 0 4 1368 494 168 10 0 chr3 102758148 102758232 -56841551 + GA-rich Low_complexity Low_complexity 19 103 0 4 1368 260 62 0 0 chr3 102758232 102758264 -56841519 + (GGAAA)n Simple_repeat Simple_repeat 3 34 0 4 1368 1733 232 169 36 chr3 102759330 102759903 -56839880 + RLTR17 LTR ERVK 1 615 -77 4 1368 27 29 0 0 chr3 102760037 102760071 -56839712 + AT_rich Low_complexity Low_complexity 1 34 0 4 21 849 226 16 6 chr3 102760346 102760528 -56839255 + RMER16 LTR ERVK 1 184 -349 4 1369 306 284 14 0 chr3 102760635 102760709 -56839074 + ID4_ SINE ID 5 79 -4 4 1369 487 255 111 35 chr3 102760972 102761171 -56838612 + B3 SINE B2 2 215 -1 4 1369 512 71 384 0 chr3 102761238 102761337 -56838446 - B1_Mus1 SINE Alu -10 138 2 4 1369 937 241 6 68 chr3 102761367 102761678 -56838105 + Lx6 LINE L1 7142 7433 -27 4 1369 525 231 143 17 chr3 102761678 102761835 -56837948 + B3A SINE B2 27 191 -4 4 1369 984 223 0 33 chr3 102761968 102762181 -56837602 - B3 SINE B2 -6 210 5 4 1369 297 0 0 0 chr3 102762181 102762214 -56837569 + (CA)n Simple_repeat Simple_repeat 2 34 0 4 1369 497 241 55 34 chr3 102762429 102762575 -56837208 + B1F SINE Alu 1 149 0 4 1369 180 0 0 0 chr3 102762587 102762607 -56837176 + (T)n Simple_repeat Simple_repeat 1 20 0 4 1369 476 261 25 31 chr3 102762621 102762783 -56837000 + RSINE1 SINE B4 5 165 0 4 1369 194 312 262 0 chr3 102762973 102763053 -56836730 + MIRc SINE MIR 29 129 -139 4 1369 460 210 168 0 chr3 102763135 102763254 -56836529 + B3A SINE B2 1 139 -59 4 1369 477 0 0 0 chr3 102763257 102763310 -56836473 + (CA)n Simple_repeat Simple_repeat 1 53 0 4 1369 414 255 17 157 chr3 102763392 102763477 -56836306 + B1_Mur1 SINE Alu 1 83 -66 4 1369 734 91 353 8 chr3 102763477 102763610 -56836173 + B2_Mm2 SINE B2 2 180 -15 4 1369 1326 78 0 0 chr3 102763610 102763790 -56835993 + (GAA)n Simple_repeat Simple_repeat 1 180 0 4 1369 414 255 17 157 chr3 102763790 102763875 -56835908 + B1_Mur1 SINE Alu 84 147 -2 4 1369 1044 202 10 5 chr3 102764062 102764266 -56835517 + B3 SINE B2 2 206 -10 4 1369 361 195 125 15 chr3 102764526 102764642 -56835141 + PB1D10 SINE Alu 13 144 -5 4 1369 261 0 0 0 chr3 102764711 102764740 -56835043 + (TTTTG)n Simple_repeat Simple_repeat 1 29 0 4 1369 1218 92 58 0 chr3 102764856 102765030 -56834753 - B2_Mm2 SINE B2 -8 187 4 4 1369 809 138 20 27 chr3 102765483 102765632 -56834151 - B1_Mur3 SINE Alu 0 149 2 4 1369 320 328 58 29 chr3 102765907 102766045 -56833738 + RSINE1 SINE B4 23 164 -1 4 1369 201 108 0 0 chr3 102766665 102766702 -56833081 + (A)n Simple_repeat Simple_repeat 1 37 0 4 1369 1205 117 28 0 chr3 102766906 102767085 -56832698 - B2_Mm2 SINE B2 -10 185 2 4 1369 390 326 150 13 chr3 102767085 102767312 -56832471 - L1MB7 LINE L1 -17 6167 5910 4 1369 24 32 0 0 chr3 102768635 102768666 -56831117 + AT_rich Low_complexity Low_complexity 1 31 0 4 1369 981 147 21 58 chr3 102768812 102769000 -56830783 - URR1B DNA MER1_type -44 181 1 4 1369 536 283 7 21 chr3 102769214 102769355 -56830428 - ID_B1 SINE B4 0 224 86 4 1369 236 170 38 0 chr3 102769367 102769420 -56830363 + (TTTG)n Simple_repeat Simple_repeat 1 55 0 4 1369 834 172 21 0 chr3 102769420 102769565 -56830218 - B1_Mur4 SINE Alu -1 149 2 4 1369 3987 139 53 21 chr3 102769636 102770351 -56829432 + RMER6A LTR ERVK 1 738 -18 4 1369 441 295 74 80 chr3 102771169 102771667 -56828116 - L1MD LINE L1 -836 5310 4816 4 1369 904 140 14 0 chr3 102771760 102771903 -56827880 - B1_Mus2 SINE Alu 0 147 3 4 1369 370 275 90 18 chr3 102771908 102772019 -56827764 - B1F SINE Alu 0 149 31 4 1369 1226 191 104 82 chr3 102772240 102772645 -56827138 - RMER10A LTR ERVL -18 424 11 4 1369 352 60 0 0 chr3 102773666 102773716 -56826067 + L1_Mus2 LINE L1 6517 6566 0 4 1369 26 0 0 0 chr3 102773720 102773746 -56826037 + AT_rich Low_complexity Low_complexity 1 26 0 4 1369 4656 166 51 7 chr3 102774499 102775343 -56824440 - MERVL_2A-int LTR ERVL -576 5185 4305 4 1369 15746 129 29 2 chr3 102775343 102776451 -56823332 - MERVL_2A-int LTR ERVL -1585 4176 3048 4 1369 198 0 0 0 chr3 102776451 102776473 -56823310 + (GGGA)n Simple_repeat Simple_repeat 2 23 0 4 1369 15746 129 29 2 chr3 102776473 102777868 -56821915 - MERVL_2A-int LTR ERVL -2714 3047 1608 4 1369 233 132 0 0 chr3 102778359 102778397 -56821386 + B2_Mm2 SINE B2 1 38 -157 4 1369 232 229 188 68 chr3 102778695 102778812 -56820971 + RLTR13C2 LTR ERVK 678 808 0 4 1369 3079 166 65 13 chr3 102778819 102779577 -56820206 - MERVL_2A-int LTR ERVL -4176 1538 720 4 1369 862 242 54 0 chr3 102779613 102779799 -56819984 + B3 SINE B2 4 199 -17 4 1369 510 293 19 62 chr3 102781069 102781229 -56818554 + RSINE1 SINE B4 11 163 -2 4 1369 183 80 0 0 chr3 102781255 102781280 -56818503 + (GAAA)n Simple_repeat Simple_repeat 2 26 0 4 1369 230 0 0 32 chr3 102781328 102781359 -56818424 + (TTA)n Simple_repeat Simple_repeat 2 31 0 4 1369 415 270 51 32 chr3 102781833 102781990 -56817793 - RSINE1 SINE B4 -4 161 2 4 1369 328 113 567 0 chr3 102782108 102782205 -56817578 - MTD LTR MaLR -39 380 214 4 1369 243 0 0 0 chr3 102782205 102782232 -56817551 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 4 1369 845 222 3 12 chr3 102782232 102782417 -56817366 - MTD LTR MaLR -194 213 13 4 1369 259 282 220 8 chr3 102782767 102782899 -56816884 + B4A SINE B4 53 212 -80 4 1369 270 267 84 96 chr3 102782931 102783097 -56816686 + RSINE1 SINE B4 2 165 0 4 1369 216 0 0 0 chr3 102783163 102783187 -56816596 + (CA)n Simple_repeat Simple_repeat 2 25 0 4 1369 433 229 91 156 chr3 102783211 102783397 -56816386 - B3 SINE B2 -4 212 39 4 1369 22 0 0 0 chr3 102783428 102783450 -56816333 + AT_rich Low_complexity Low_complexity 1 22 0 4 1369 507 189 18 9 chr3 102783626 102783738 -56816045 + B3 SINE B2 102 214 -2 4 1369 867 127 0 15 chr3 102785665 102785801 -56813982 - B1_Mus2 SINE Alu -13 134 1 4 1369 271 231 16 32 chr3 102785692 102785817 -56813966 - ORR1B1-int LTR MaLR -755 754 632 4 1369 757 243 102 181 chr3 102786023 102786233 -56813550 - MTE2a LTR MaLR 0 379 173 4 1369 684 189 136 91 chr3 102786233 102786431 -56813352 - B3 SINE B2 -9 207 1 4 1369 757 243 102 181 chr3 102786431 102786612 -56813171 - MTE2a LTR MaLR -207 172 19 4 1369 665 154 0 107 chr3 102786786 102786917 -56812866 + B1_Mur2 SINE Alu 2 118 -31 4 1369 198 71 0 0 chr3 102787242 102787270 -56812513 + (CAGAGA)n Simple_repeat Simple_repeat 4 31 0 4 1369 36096 35 0 0 chr3 102787459 102792859 -56806924 + L1Md_T LINE L1 93 5589 -297 4 1369 9162 6 0 0 chr3 102792859 102793855 -56805928 + L1Md_T LINE L1 5590 6585 0 4 1369 21 0 0 0 chr3 102793871 102793892 -56805891 + AT_rich Low_complexity Low_complexity 1 21 0 4 1369 204 40 0 0 chr3 102794063 102794088 -56805695 + (A)n Simple_repeat Simple_repeat 1 25 0 4 1369 308 86 42 14 chr3 102794316 102794387 -56805396 + (TGG)n Simple_repeat Simple_repeat 2 74 0 4 1369 511 234 26 22 chr3 102794444 102794601 -56805182 - ID_B1 SINE B4 -3 221 71 4 1369 289 273 55 55 chr3 102794742 102794870 -56804913 + ID_B1 SINE B4 3 130 -94 4 1369 1050 64 0 0 chr3 102795007 102795148 -56804635 - B1_Mus2 SINE Alu -1 146 6 4 1369 535 233 113 0 chr3 102795148 102795281 -56804502 + B1_Mur2 SINE Alu 2 149 0 4 1369 261 355 0 3 chr3 102795582 102795675 -56804108 + ID4_ SINE ID 3 94 -58 4 1369 767 66 215 0 chr3 102795720 102795841 -56803942 - B1_Mm SINE Alu 0 147 1 4 1369 880 176 7 20 chr3 102795914 102796065 -56803718 - B1_Mur3 SINE Alu 0 149 1 5 1369 216 186 23 0 chr3 102796166 102796209 -56803574 + (TGG)n Simple_repeat Simple_repeat 3 46 0 5 1369 629 164 90 76 chr3 102796242 102796387 -56803396 + B1_Mus1 SINE Alu 1 147 -1 5 1369 741 258 10 29 chr3 102796404 102796608 -56803175 + B3 SINE B2 17 216 0 5 1369 584 253 40 14 chr3 102796691 102796839 -56802944 - RSINE1 SINE B4 -13 152 1 5 1369 259 167 30 0 chr3 102797173 102797239 -56802544 + GA-rich Low_complexity Low_complexity 4 71 0 5 1369 427 276 24 0 chr3 102797251 102797374 -56802409 - RSINE1 SINE B4 -21 144 19 5 1369 821 167 42 0 chr3 102797614 102797758 -56802025 - B1_Mur4 SINE Alu 0 150 1 5 1369 284 267 35 0 chr3 102798014 102798100 -56801683 - L1MB7 LINE L1 -60 6124 6036 5 1369 588 69 43 8 chr3 102798134 102798251 -56801532 + (TC)n Simple_repeat Simple_repeat 2 122 0 5 1369 230 271 0 12 chr3 102799272 102799358 -56800425 + GA-rich Low_complexity Low_complexity 3 87 0 5 1369 252 0 0 0 chr3 102800195 102800223 -56799560 + (TG)n Simple_repeat Simple_repeat 2 29 0 5 1369 367 264 38 0 chr3 102800754 102800860 -56798923 + RSINE1 SINE B4 39 148 -17 5 1369 21 0 0 0 chr3 102800877 102800898 -56798885 + AT_rich Low_complexity Low_complexity 1 21 0 5 1369 236 206 67 0 chr3 102801522 102801591 -56798192 + PB1D10 SINE Alu 43 117 -32 5 1369 469 207 36 9 chr3 102802058 102802170 -56797613 - PB1D10 SINE Alu 0 117 3 5 1369 374 295 97 15 chr3 102803027 102803062 -56796721 + B4 SINE B4 50 95 -197 5 1369 582 150 70 0 chr3 102803062 102803162 -56796621 + B1_Mur4 SINE Alu 1 107 -43 5 1369 341 103 0 33 chr3 102803162 102803222 -56796561 + (GAAAA)n Simple_repeat Simple_repeat 3 60 0 5 1369 597 155 368 0 chr3 102803288 102803443 -56796340 + B3 SINE B2 1 212 -4 5 1369 648 294 9 29 chr3 102803482 102803692 -56796091 + ID_B1 SINE B4 19 224 0 5 1369 766 263 19 39 chr3 102803705 102803911 -56795872 + B3 SINE B2 2 203 -13 5 1369 563 102 80 0 chr3 102803947 102804035 -56795748 + B1_Mus1 SINE Alu 39 133 -15 5 1369 1172 164 29 5 chr3 102804293 102804502 -56795281 + B3 SINE B2 3 216 0 5 1369 294 257 71 71 chr3 102804598 102804711 -56795072 + PB1D10 SINE Alu 3 115 -2 5 1369 1050 187 28 37 chr3 102804807 102805024 -56794759 + B3 SINE B2 2 216 0 5 1369 422 304 74 0 chr3 102805055 102805190 -56794593 + B1_Mur1 SINE Alu 3 147 -2 5 1369 1178 76 0 0 chr3 102805199 102805344 -56794439 + B1_Mus1 SINE Alu 4 148 0 5 1369 1373 112 5 0 chr3 102805347 102805534 -56794249 + B2_Mm1t SINE B2 2 189 -4 5 1369 405 58 0 0 chr3 102806557 102806609 -56793174 + (CA)n Simple_repeat Simple_repeat 2 53 0 5 1369 198 0 0 0 chr3 102806654 102806676 -56793107 + (CTGTG)n Simple_repeat Simple_repeat 5 26 0 5 1369 641 175 79 14 chr3 102807466 102807605 -56792178 + B1_Mus1 SINE Alu 1 148 0 5 1369 551 264 8 15 chr3 102807905 102808036 -56791747 + RSINE1 SINE B4 3 132 -33 5 1369 796 192 20 0 chr3 102808184 102808330 -56791453 + ID_B1 SINE B4 70 218 -6 5 1369 25 31 0 0 chr3 102809214 102809246 -56790537 + AT_rich Low_complexity Low_complexity 1 32 0 5 1369 255 250 60 126 chr3 102809286 102809437 -56790346 + MLT1N2 LTR MaLR 1 141 -421 5 1369 1159 62 7 0 chr3 102809883 102810028 -56789755 + B1_Mus2 SINE Alu 2 147 0 5 1369 401 277 8 151 chr3 102810130 102810368 -56789415 + ID_B1 SINE B4 21 224 0 5 1369 654 204 0 50 chr3 102810230 102810369 -56789414 + B1_Mur2 SINE Alu 17 148 -1 5 1369 288 167 91 0 chr3 102810376 102810442 -56789341 + B1_Mm SINE Alu 17 88 -59 5 1369 360 281 48 78 chr3 102810723 102810989 -56788794 - B4A SINE B4 -11 281 7 5 1369 290 241 25 0 chr3 102811471 102811550 -56788233 + L1MC4a LINE L1 7461 7541 -341 5 1369 704 233 81 9 chr3 102811574 102811773 -56788010 + B3A SINE B2 2 211 -5 5 1369 513 262 183 4 chr3 102811777 102812056 -56787727 + L1MC4a LINE L1 7539 7867 -15 5 1369 3173 176 25 38 chr3 102812239 102812847 -56786936 - RMER1B Other Other -3 1063 464 5 1369 1300 114 66 50 chr3 102812858 102813117 -56786666 - RLTR11B LTR ERVK -20 433 171 5 1369 1088 103 0 14 chr3 102813117 102813265 -56786518 + B1_Mus1 SINE Alu 2 147 -1 5 1369 993 108 0 135 chr3 102813293 102813508 -56786275 - RLTR11B LTR ERVK -267 186 1 5 1369 381 161 28 131 chr3 102813511 102813618 -56786165 - MYSERV-int LTR ERVK -3 6547 6452 5 1369 1102 55 14 20 chr3 102813618 102813766 -56786017 + B1_Mus2 SINE Alu 1 147 0 5 1369 678 57 37 9 chr3 102813768 102813875 -56785908 + (GAAAA)n Simple_repeat Simple_repeat 1 110 0 5 1369 2883 63 44 10 chr3 102813909 102814292 -56785491 + MTA_Mm LTR MaLR 1 396 0 5 1369 1203 47 0 39 chr3 102814318 102814472 -56785311 + B1_Mus1 SINE Alu 1 148 0 5 1369 728 269 34 5 chr3 102814557 102814766 -56785017 + B3 SINE B2 2 216 0 5 1369 887 109 16 0 chr3 102815001 102815129 -56784654 - B1_Mur3 SINE Alu -19 130 1 5 1369 340 290 10 10 chr3 102815200 102815301 -56784482 + PB1 SINE Alu 19 119 -8 5 1369 510 69 0 0 chr3 102815330 102815402 -56784381 + B1_Mur4 SINE Alu 79 150 0 5 1369 980 179 10 39 chr3 102815515 102815718 -56784065 - ORR1C1 LTR MaLR -2 376 180 5 1369 586 241 0 0 chr3 102815744 102815856 -56783927 + B3 SINE B2 3 114 -102 5 1369 673 188 23 0 chr3 102815862 102815995 -56783788 + B1_Mur3 SINE Alu 14 149 0 5 1369 937 68 113 0 chr3 102816003 102816136 -56783647 + B1_Mus1 SINE Alu 1 148 0 5 1369 222 62 0 0 chr3 102816158 102816190 -56783593 + (CAGA)n Simple_repeat Simple_repeat 2 33 0 5 1369 280 261 29 0 chr3 102816285 102816354 -56783429 + PB1D10 SINE Alu 6 76 -41 5 1369 548 29 0 14 chr3 102816411 102816482 -56783301 + (TTTC)n Simple_repeat Simple_repeat 3 72 0 5 1369 1040 119 96 0 chr3 102816484 102816661 -56783122 - B2_Mm2 SINE B2 -1 194 1 5 1369 206 163 0 23 chr3 102816665 102816709 -56783074 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 5 1369 669 132 138 8 chr3 102816709 102816839 -56782944 - B1_Mur4 SINE Alu 0 150 4 5 1369 339 143 84 42 chr3 102817096 102817191 -56782592 + B2_Mm2 SINE B2 90 188 -7 5 1369 541 90 11 11 chr3 102817196 102817286 -56782497 + (GGAA)n Simple_repeat Simple_repeat 4 93 0 5 1369 264 305 60 33 chr3 102817338 102817515 -56782268 - L2c LINE L2 -242 3145 2959 5 1369 281 204 0 0 chr3 102817634 102817688 -56782095 + PB1D9 SINE Alu 2 55 -65 5 1369 552 73 0 0 chr3 102817704 102817786 -56781997 + (CA)n Simple_repeat Simple_repeat 1 82 0 5 1369 341 320 31 16 chr3 102817974 102818101 -56781682 - B1F1 SINE Alu 0 149 21 5 1369 420 191 149 106 chr3 102818233 102818374 -56781409 - B1_Mur3 SINE Alu 0 149 3 5 1369 555 266 8 0 chr3 102818384 102818512 -56781271 - ID_B1 SINE B4 0 224 96 5 1369 484 261 49 7 chr3 102818512 102818526 -56781257 - B1F1 SINE Alu 0 148 1 5 1369 277 24 0 45 chr3 102818717 102818761 -56781022 + (TAAA)n Simple_repeat Simple_repeat 2 43 0 5 1369 1126 63 0 27 chr3 102818827 102818964 -56780819 + B1_Mus2 SINE Alu 1 137 -10 5 1369 374 0 22 0 chr3 102818964 102819010 -56780773 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 5 1369 585 176 129 8 chr3 102819051 102819183 -56780600 + B1_Mur3 SINE Alu 1 148 -1 5 1369 247 150 0 0 chr3 102819205 102819245 -56780538 + B3 SINE B2 1 40 -176 5 1369 285 213 16 16 chr3 102819268 102819330 -56780453 + B3 SINE B2 96 157 -59 5 1369 308 242 0 0 chr3 102819319 102819385 -56780398 + B3 SINE B2 69 134 -82 5 1369 271 300 19 39 chr3 102819483 102819587 -56780196 - RMER10B LTR ERVL -30 368 267 5 1369 231 36 0 0 chr3 102819903 102819931 -56779852 + (T)n Simple_repeat Simple_repeat 1 28 0 5 1369 1148 70 0 0 chr3 102819933 102820076 -56779707 - B1_Mus1 SINE Alu -1 147 5 5 1369 891 105 8 8 chr3 102820078 102820202 -56779581 + B1_Mus1 SINE Alu 15 139 -9 5 1369 333 0 0 0 chr3 102820202 102820239 -56779544 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 5 1369 447 184 0 0 chr3 102820248 102820335 -56779448 + GA-rich Low_complexity Low_complexity 4 90 0 5 1369 278 258 0 51 chr3 102820339 102820437 -56779346 - B1F SINE Alu -20 129 37 5 1369 283 222 0 16 chr3 102820491 102820555 -56779228 - PB1D10 SINE Alu -9 108 46 5 1369 222 37 0 0 chr3 102821009 102821036 -56778747 + (TG)n Simple_repeat Simple_repeat 1 27 0 5 1369 393 180 0 0 chr3 102821036 102821125 -56778658 + GA-rich Low_complexity Low_complexity 1 89 0 5 1369 315 127 0 0 chr3 102821854 102821917 -56777866 + (TC)n Simple_repeat Simple_repeat 2 64 0 5 1369 1080 57 7 21 chr3 102821921 102822065 -56777718 - B1_Mus1 SINE Alu -6 142 1 5 1369 348 188 44 56 chr3 102822311 102822401 -56777382 + PB1D10 SINE Alu 24 112 -5 5 1369 223 302 0 0 chr3 102822402 102822465 -56777318 + GA-rich Low_complexity Low_complexity 2 64 0 5 1369 297 315 7 65 chr3 102822609 102822748 -56777035 + B1_Mur2 SINE Alu 1 131 -18 5 1369 405 158 0 13 chr3 102822713 102822790 -56776993 - ORR1B2 LTR MaLR -291 76 1 5 1369 496 128 2 14 chr3 102822790 102822870 -56776913 - ORR1B2-int LTR MaLR -52 1528 1431 5 1369 580 165 9 28 chr3 102822892 102822998 -56776785 + B1_Mur4 SINE Alu 47 150 0 5 1369 880 123 375 0 chr3 102822994 102823213 -56776570 - ORR1A3-int LTR MaLR -97 1866 1566 5 1369 279 0 0 0 chr3 102823214 102823245 -56776538 + (CA)n Simple_repeat Simple_repeat 2 32 0 5 1369 317 228 193 0 chr3 102823387 102823501 -56776282 + B1F2 SINE Alu 2 137 -12 5 1369 488 179 70 26 chr3 102823620 102823735 -56776048 + PB1D7 SINE Alu 1 120 0 5 1369 767 177 35 21 chr3 102826058 102826202 -56773581 - B1_Mur1 SINE Alu 0 149 4 6 1369 642 212 0 0 chr3 102826374 102826492 -56773291 + B1_Mus1 SINE Alu 31 148 0 6 1369 279 0 0 0 chr3 102826830 102826861 -56772922 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 6 1369 1227 27 7 0 chr3 102826868 102827014 -56772769 - B1_Mus2 SINE Alu 0 147 1 6 1369 4735 21 0 0 chr3 102827135 102827669 -56772114 - L1Md_A LINE L1 0 6582 6049 6 1369 354 218 26 0 chr3 102827821 102827899 -56771884 + PB1D7 SINE Alu 33 112 -8 6 1369 225 157 0 89 chr3 102827853 102827909 -56771874 + ID_B1 SINE B4 174 224 0 6 1369 514 130 0 32 chr3 102828057 102828152 -56771631 - B1_Mus2 SINE Alu -7 140 49 6 1369 417 172 35 24 chr3 102828212 102828319 -56771464 - B1_Mus2 SINE Alu -8 112 5 6 1369 626 218 73 0 chr3 102828780 102828904 -56770879 + B1_Mm SINE Alu 1 133 -14 6 1369 22 0 0 0 chr3 102829004 102829026 -56770757 + AT_rich Low_complexity Low_complexity 1 22 0 6 1369 1115 70 14 7 chr3 102829026 102829171 -56770612 - B1_Mm SINE Alu 0 147 2 6 1369 408 277 101 0 chr3 102829235 102829354 -56770429 + ID_B1 SINE B4 44 174 -50 6 1369 23 0 0 0 chr3 102829571 102829594 -56770189 + AT_rich Low_complexity Low_complexity 1 23 0 6 1369 288 162 226 48 chr3 102829598 102829682 -56770101 - B1_Mus2 SINE Alu 0 147 49 6 1369 556 198 99 0 chr3 102829764 102829885 -56769898 - B1_Mus1 SINE Alu -14 134 2 6 1369 311 242 97 39 chr3 102829927 102830030 -56769753 + ID4 SINE ID 16 124 -28 6 1369 996 123 70 43 chr3 102830230 102830417 -56769366 - B2_Mm2 SINE B2 -2 193 2 6 1369 709 159 30 15 chr3 102830801 102830935 -56768848 - B1_Mur4 SINE Alu -13 137 2 6 1369 374 303 23 104 chr3 102831035 102831208 -56768575 - RSINE1 SINE B4 -2 163 5 6 1369 374 283 17 34 chr3 102831303 102831420 -56768363 + PB1 SINE Alu 12 126 -1 6 1369 300 129 62 31 chr3 102831476 102831540 -56768243 - RSINE1 SINE B4 -36 129 64 6 1369 312 280 122 0 chr3 102831860 102831967 -56767816 + B4 SINE B4 79 198 -94 6 1369 621 216 32 0 chr3 102831871 102831996 -56767787 + B1_Mus2 SINE Alu 8 136 -11 6 1369 303 93 0 0 chr3 102832998 102833041 -56766742 + (T)n Simple_repeat Simple_repeat 1 43 0 6 1369 916 229 14 10 chr3 102834227 102834434 -56765349 - B3 SINE B2 0 216 9 6 1369 846 173 14 7 chr3 102834447 102834587 -56765196 - B1_Mus1 SINE Alu -7 141 1 6 1369 182 37 0 36 chr3 102834609 102834629 -56765154 + (TTTC)n Simple_repeat Simple_repeat 1 20 0 6 1369 1441 39 77 22 chr3 102834629 102834811 -56764972 - B2_Mm1a SINE B2 -1 192 1 6 1369 182 37 0 36 chr3 102834811 102834818 -56764965 + (TTTC)n Simple_repeat Simple_repeat 2 8 0 6 1369 954 121 67 0 chr3 102834838 102834987 -56764796 - B2_Mm2 SINE B2 -14 181 23 6 1369 855 39 0 0 chr3 102834987 102835091 -56764692 - B1_Mus1 SINE Alu -43 105 2 6 1369 315 247 99 22 chr3 102835282 102835373 -56764410 + PB1 SINE Alu 21 118 -9 6 1369 180 0 0 0 chr3 102835854 102835874 -56763909 + (TG)n Simple_repeat Simple_repeat 2 21 0 6 1369 1404 72 38 11 chr3 102836330 102836513 -56763270 - B2_Mm2 SINE B2 -5 190 3 6 1369 237 302 170 40 chr3 102836847 102836947 -56762836 + PB1D9 SINE Alu 3 115 -5 6 1369 1263 34 0 7 chr3 102836985 102837133 -56762650 + B1_Mm SINE Alu 1 147 0 6 1369 21 0 0 0 chr3 102837473 102837494 -56762289 + AT_rich Low_complexity Low_complexity 1 21 0 6 1369 1061 54 0 0 chr3 102837494 102837624 -56762159 - B1_Mus1 SINE Alu 0 148 19 6 1369 400 224 159 0 chr3 102837689 102837796 -56761987 - ID_B1 SINE B4 -4 220 97 6 1369 300 291 26 9 chr3 102838069 102838175 -56761608 + PB1D10 SINE Alu 1 113 -36 6 1369 227 163 111 44 chr3 102838215 102838260 -56761523 + PB1D9 SINE Alu 2 49 -71 6 1369 1594 48 0 11 chr3 102838385 102838576 -56761207 + B2_Mm2 SINE B2 2 190 -5 6 1369 1086 129 30 190 chr3 102839026 102839136 -56760647 - URR1B DNA MER1_type 0 225 151 6 1369 1310 47 0 0 chr3 102839136 102839284 -56760499 - B1_Mus1 SINE Alu 0 148 1 6 1369 1086 129 30 190 chr3 102839284 102839441 -56760342 - URR1B DNA MER1_type -75 150 1 6 1369 411 300 36 0 chr3 102839478 102839588 -56760195 - PB1D9 SINE Alu -6 114 1 6 1369 252 329 219 8 chr3 102839697 102839948 -56759835 - Charlie7 DNA MER1_type -2053 559 256 6 1369 845 103 29 14 chr3 102840225 102840363 -56759420 - B1_Mur3 SINE Alu 0 149 10 6 1369 660 253 0 0 chr3 102841180 102841330 -56758453 - B1_Mur4 SINE Alu 0 150 1 6 1369 277 269 0 141 chr3 102841226 102841347 -56758436 - MT2B LTR ERVL -345 256 153 6 1369 993 228 38 19 chr3 102841362 102841572 -56758211 + B3 SINE B2 1 214 -2 6 1369 1389 115 16 5 chr3 102841747 102841940 -56757843 - B2_Mm2 SINE B2 0 195 1 6 1369 231 36 0 0 chr3 102842022 102842050 -56757733 + (TATTG)n Simple_repeat Simple_repeat 2 29 0 6 1369 684 251 54 44 chr3 102843098 102843302 -56756481 + B3 SINE B2 1 206 -10 6 1369 358 270 67 34 chr3 102843338 102843457 -56756326 - MIRb SINE MIR -21 247 125 6 1369 716 272 11 22 chr3 102843573 102843757 -56756026 - MER5A DNA MER1_type -7 182 1 6 1369 22 35 0 0 chr3 102844595 102844624 -56755159 + AT_rich Low_complexity Low_complexity 1 29 0 6 1369 247 284 144 18 chr3 102845236 102845347 -56754436 + PB1 SINE Alu 1 125 -2 6 1369 469 212 24 0 chr3 102846057 102846142 -56753641 - B1F SINE Alu -52 97 11 6 1369 649 301 5 65 chr3 102846169 102846354 -56753429 - B3A SINE B2 -21 177 4 6 1369 852 132 7 22 chr3 102846553 102846692 -56753091 + B1_Mur4 SINE Alu 14 150 0 6 1369 353 324 7 84 chr3 102846554 102846709 -56753074 + B4A SINE B4 99 241 -51 6 1369 186 71 0 0 chr3 102847987 102848015 -56751768 + (A)n Simple_repeat Simple_repeat 1 28 0 6 1369 270 227 182 0 chr3 102848020 102848086 -56751697 + ID4 SINE ID 4 81 -2 6 1369 214 300 20 0 chr3 102848856 102848906 -56750877 + RSINE1 SINE B4 13 63 -102 6 1369 21 0 0 0 chr3 102849070 102849091 -56750692 + AT_rich Low_complexity Low_complexity 1 21 0 6 1369 770 69 0 0 chr3 102849412 102849513 -56750270 - B1_Mus2 SINE Alu 0 147 47 6 1369 492 167 261 2 chr3 102849536 102849650 -56750133 - B1_Mus2 SINE Alu -6 144 3 6 1369 532 252 169 19 chr3 102849664 102849818 -56749965 - B3 SINE B2 -1 215 39 6 1369 1616 58 5 10 chr3 102850204 102850397 -56749386 - B2_Mm1a SINE B2 0 193 2 6 1369 23 0 0 0 chr3 102850457 102850480 -56749303 + AT_rich Low_complexity Low_complexity 1 23 0 6 1369 745 62 254 9 chr3 102850505 102850619 -56749164 - B1_Mus2 SINE Alu -5 142 1 6 1369 3322 46 88 69 chr3 102851214 102851680 -56748103 - MT2C_Mm LTR ERVL 0 475 1 6 1369 342 235 0 0 chr3 102853028 102853096 -56746687 - ID4_ SINE ID -14 69 2 6 1369 243 336 112 100 chr3 102854630 102854881 -56744902 + MIR SINE MIR 1 254 -8 6 1369 421 267 85 17 chr3 102855327 102855445 -56744338 - B1F2 SINE Alu -23 126 1 6 1369 201 244 44 0 chr3 102855831 102855876 -56743907 - L2a LINE L2 -58 3368 3322 6 1369 418 261 35 0 chr3 102855934 102856049 -56743734 - PB1D9 SINE Alu -1 119 1 6 1369 21 71 0 0 chr3 102856152 102856194 -56743589 + AT_rich Low_complexity Low_complexity 1 42 0 6 1369 332 296 80 0 chr3 102856263 102856351 -56743432 + PB1D10 SINE Alu 1 95 -22 6 1369 198 0 0 0 chr3 102856351 102856373 -56743410 + (TG)n Simple_repeat Simple_repeat 2 23 0 6 1369 363 305 78 73 chr3 102856417 102856608 -56743175 + B3A SINE B2 4 195 -3 6 1369 277 226 167 42 chr3 102857880 102858000 -56741783 + MIR SINE MIR 70 204 -58 6 1369 207 100 0 0 chr3 102858827 102858857 -56740926 + (CTTG)n Simple_repeat Simple_repeat 2 31 0 6 1369 281 281 24 12 chr3 102858858 102858941 -56740842 - B1_Mur4 SINE Alu -7 143 60 6 1369 241 216 0 38 chr3 102860557 102860610 -56739173 - ID_B1 SINE B4 0 224 174 6 1369 275 273 102 0 chr3 102860565 102860653 -56739130 - PB1D10 SINE Alu -8 109 13 6 1369 23 0 0 0 chr3 102861694 102861717 -56738066 + AT_rich Low_complexity Low_complexity 1 23 0 6 1369 335 301 8 81 chr3 102863395 102863518 -56736265 + PB1D10 SINE Alu 3 116 -1 6 1369 256 133 39 39 chr3 102863707 102863809 -56735974 + T-rich Low_complexity Low_complexity 3 104 0 6 1369 364 218 0 121 chr3 102863840 102863939 -56735844 - PB1D9 SINE Alu 0 120 34 6 1369 216 0 0 0 chr3 102864405 102864429 -56735354 + (TTTTG)n Simple_repeat Simple_repeat 5 28 0 6 1369 1215 75 7 0 chr3 102864582 102864728 -56735055 + B1_Mus1 SINE Alu 2 148 0 6 1369 498 241 35 9 chr3 102864893 102865006 -56734777 - PB1D10 SINE Alu 0 117 2 6 1369 731 121 115 46 chr3 102865083 102865213 -56734570 - B1_Mur4 SINE Alu -7 143 5 6 1369 231 301 46 22 chr3 102865284 102865403 -56734380 + MIR SINE MIR 43 175 -93 6 1369 221 273 130 0 chr3 102865444 102865521 -56734262 - MIR SINE MIR -28 234 148 6 1369 1002 184 64 5 chr3 102865529 102865731 -56734052 - B3 SINE B2 0 216 3 6 1369 1185 102 0 0 chr3 102865765 102865912 -56733871 - B1_Mus2 SINE Alu 0 147 1 6 1369 459 0 0 0 chr3 102866666 102866717 -56733066 + (TTG)n Simple_repeat Simple_repeat 2 52 0 6 1369 1069 59 7 29 chr3 102866717 102866856 -56732927 - B1_Mus1 SINE Alu -11 137 2 7 1369 431 266 75 45 chr3 102867511 102867645 -56732138 + B3A SINE B2 60 197 -1 7 1369 1561 58 21 0 chr3 102867648 102867838 -56731945 + B2_Mm2 SINE B2 1 194 -1 7 1369 216 0 0 0 chr3 102868949 102868973 -56730810 + (T)n Simple_repeat Simple_repeat 1 24 0 7 1369 254 278 62 100 chr3 102869316 102869476 -56730307 + MamSINE1 SINE tRNA 12 165 -125 7 1369 561 226 0 28 chr3 102869979 102870088 -56729695 - PB1D10 SINE Alu -5 112 7 7 1369 274 265 11 57 chr3 102870010 102870098 -56729685 - B4A SINE B4 -123 169 86 7 1369 343 149 71 43 chr3 102870389 102870459 -56729324 - HAL1-3A_ME LINE L1 -811 2047 1976 7 1369 204 97 0 0 chr3 102870465 102870496 -56729287 + (TATG)n Simple_repeat Simple_repeat 3 33 0 7 1369 1236 41 14 0 chr3 102870621 102870766 -56729017 + B1_Mus2 SINE Alu 1 147 0 7 1369 225 0 0 0 chr3 102870766 102870791 -56728992 + (A)n Simple_repeat Simple_repeat 1 25 0 7 1369 26 0 0 0 chr3 102871787 102871813 -56727970 + AT_rich Low_complexity Low_complexity 1 26 0 7 1369 1892 128 134 15 chr3 102871852 102872194 -56727589 - ORR1B1 LTR MaLR -9 385 3 7 1369 235 323 39 39 chr3 102872377 102872480 -56727303 + Tigger7 DNA MER2_type 128 230 -2261 7 1369 377 289 0 136 chr3 102872577 102872761 -56727022 + Tigger7 DNA MER2_type 2330 2488 -3 7 1369 317 254 0 0 chr3 102872837 102872896 -56726887 + B1F2 SINE Alu 1 59 -90 7 1369 267 31 0 0 chr3 102874001 102874033 -56725750 + (GA)n Simple_repeat Simple_repeat 1 32 0 7 1369 305 344 39 76 chr3 102874099 102874461 -56725322 + LTR16B1 LTR ERVL 55 458 -5 7 1369 352 275 21 12 chr3 102874425 102874544 -56725239 - PB1D10 SINE Alu -17 132 10 7 1369 253 324 9 45 chr3 102874451 102874561 -56725222 - ID_B1 SINE B4 -41 183 78 7 1369 327 255 269 19 chr3 102874585 102874693 -56725090 - B1F1 SINE Alu -13 136 2 7 1369 223 288 41 0 chr3 102874819 102874892 -56724891 + PB1D10 SINE Alu 37 112 -5 7 1369 324 67 0 0 chr3 102874927 102874937 -56724846 + (T)n Simple_repeat Simple_repeat 1 10 0 7 1369 1314 27 0 0 chr3 102874937 102875084 -56724699 - B1_Mm SINE Alu 0 147 1 7 1369 324 67 0 0 chr3 102875084 102875118 -56724665 + (T)n Simple_repeat Simple_repeat 1 34 0 7 1369 734 152 16 21 chr3 102875118 102875256 -56724527 + B1_Mur4 SINE Alu 10 142 -5 7 1369 463 231 86 9 chr3 102875384 102875489 -56724294 - B3A SINE B2 -42 156 44 7 1369 5051 144 124 61 chr3 102875556 102876519 -56723264 + RLTR13D2 LTR ERVK 1 1023 0 7 1369 541 250 39 8 chr3 102876595 102876724 -56723059 + RSINE1 SINE B4 2 134 -31 7 1369 596 322 27 11 chr3 102876757 102876945 -56722838 - B3 SINE B2 -25 191 1 7 1369 372 276 59 17 chr3 102877080 102877198 -56722585 - B1F SINE Alu 0 149 27 7 1369 499 288 80 0 chr3 102877092 102877217 -56722566 - ID_B1 SINE B4 -10 214 80 7 1369 773 116 18 6 chr3 102877342 102877507 -56722276 + (TG)n Simple_repeat Simple_repeat 1 167 0 7 1369 242 211 16 95 chr3 102879008 102879071 -56720712 + tRNA-Ala-GCY_ tRNA tRNA 11 68 -7 7 1369 421 250 0 0 chr3 102879586 102879674 -56720109 + PB1D10 SINE Alu 21 108 -9 7 1369 201 324 49 49 chr3 102880120 102880259 -56719524 - MIRb SINE MIR -44 224 85 7 1369 211 316 89 38 chr3 102881402 102881560 -56718223 - MIRc SINE MIR -3 265 100 7 1369 1053 130 0 7 chr3 102881972 102882119 -56717664 + B1_Mus1 SINE Alu 2 147 -1 7 1369 270 162 27 93 chr3 102882162 102882237 -56717546 + RSINE1 SINE B4 56 125 -40 7 1369 388 71 41 81 chr3 102882237 102882360 -56717423 + (TCTCTG)n Simple_repeat Simple_repeat 3 120 0 7 1369 201 143 0 0 chr3 102882542 102882577 -56717206 + (CCAA)n Simple_repeat Simple_repeat 2 36 0 7 1369 180 0 0 0 chr3 102883820 102883840 -56715943 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 7 1369 873 171 64 0 chr3 102883880 102884020 -56715763 + B1_Mur3 SINE Alu 1 149 0 7 1369 327 245 20 69 chr3 102884139 102884240 -56715543 - MTEa LTR MaLR -5 374 279 7 1369 509 254 22 7 chr3 102885384 102885523 -56714260 + RSINE1 SINE B4 8 148 -17 7 1369 216 0 0 0 chr3 102885525 102885549 -56714234 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 7 1369 1001 224 28 9 chr3 102885571 102885783 -56714000 + B3 SINE B2 1 216 0 7 1369 948 176 87 43 chr3 102886798 102887029 -56712754 + 7SK RNA RNA 1 241 -90 7 1369 332 277 181 38 chr3 102887201 102887222 -56712561 + ID_B1 SINE B4 65 100 -124 7 1369 352 189 198 62 chr3 102887222 102887318 -56712465 + B1F1 SINE Alu 1 109 -8 7 1369 538 275 51 0 chr3 102887325 102887463 -56712320 + ID_B1 SINE B4 79 223 -1 7 1369 246 246 45 15 chr3 102887451 102887517 -56712266 + PB1D7 SINE Alu 46 113 -7 7 1369 1595 33 33 0 chr3 102887589 102887770 -56712013 - B2_Mm1a SINE B2 -5 188 2 7 1369 437 196 72 126 chr3 102887781 102887892 -56711891 - PB1D10 SINE Alu 0 117 13 7 1369 800 255 58 74 chr3 102888075 102888333 -56711450 + B4A SINE B4 39 292 0 7 1369 1115 62 7 0 chr3 102888718 102888864 -56710919 + B1_Mus2 SINE Alu 1 147 0 7 1369 429 20 0 0 chr3 102888872 102888922 -56710861 + (GGAA)n Simple_repeat Simple_repeat 3 52 0 7 1369 935 142 13 26 chr3 102889487 102889639 -56710144 - B1_Mur4 SINE Alu 0 150 1 7 1369 206 258 32 16 chr3 102890402 102890465 -56709318 + CT-rich Low_complexity Low_complexity 3 66 0 7 1369 207 0 0 0 chr3 102890491 102890514 -56709269 + (TTA)n Simple_repeat Simple_repeat 2 24 0 7 1369 1601 26 21 0 chr3 102890559 102890748 -56709035 - B2_Mm1t SINE B2 0 193 1 7 1369 862 146 0 0 chr3 102890758 102890888 -56708895 - B1_Mur2 SINE Alu -7 142 13 7 1369 982 46 0 8 chr3 102890921 102891053 -56708730 - B1_Mm SINE Alu 0 147 17 7 1369 360 64 0 0 chr3 102891320 102891367 -56708416 + (CTAA)n Simple_repeat Simple_repeat 2 48 0 7 171 724 201 0 0 chr3 102891411 102891545 -56708238 + B1_Mur2 SINE Alu 9 142 -7 7 1370 920 113 42 0 chr3 102891654 102891796 -56707987 - B1_Mus1 SINE Alu 0 148 1 7 1370 784 161 49 35 chr3 102891864 102892006 -56707777 + B1_Mur2 SINE Alu 1 144 -5 7 1370 368 65 0 0 chr3 102892012 102892058 -56707725 - L1Md_F2 LINE L1 -253 6329 6284 7 1370 1078 43 28 14 chr3 102892594 102892950 -56706833 + (TCTA)n Simple_repeat Simple_repeat 1 361 0 7 1370 918 239 24 0 chr3 102892973 102893186 -56706597 - ID_B1 SINE B4 -1 223 6 7 1370 24 0 0 0 chr3 102893202 102893226 -56706557 + AT_rich Low_complexity Low_complexity 1 24 0 7 1370 919 129 7 33 chr3 102893253 102893405 -56706378 - B1_Mus1 SINE Alu 0 148 1 7 1370 217 237 105 138 chr3 102893407 102893559 -56706224 - B2_Mm2 SINE B2 -1 194 48 7 1370 190 328 101 0 chr3 102893623 102893742 -56706041 - MIRb SINE MIR -127 141 11 7 1370 611 146 23 8 chr3 102894266 102894397 -56705386 + GA-rich Low_complexity Low_complexity 2 134 0 7 1370 453 286 0 76 chr3 102894605 102894749 -56705034 - ID_B1 SINE B4 -6 218 86 7 1370 275 267 13 13 chr3 102895709 102895785 -56703998 + GA-rich Low_complexity Low_complexity 1 76 0 7 1370 483 18 0 0 chr3 102896536 102896592 -56703191 + (TC)n Simple_repeat Simple_repeat 1 56 0 7 1370 482 260 0 0 chr3 102896592 102896692 -56703091 - PB1D10 SINE Alu -17 100 1 7 1370 705 255 0 0 chr3 102896908 102897057 -56702726 - B1_Mur1 SINE Alu 0 149 1 7 1370 463 267 0 33 chr3 102897058 102897178 -56702605 - PB1D10 SINE Alu -1 116 1 7 1370 306 269 0 37 chr3 102897420 102897501 -56702282 + B4A SINE B4 1 78 -214 7 1370 495 0 0 0 chr3 102897586 102897641 -56702142 + (TG)n Simple_repeat Simple_repeat 1 55 0 7 1370 270 0 0 0 chr3 102897641 102897670 -56702113 + (GA)n Simple_repeat Simple_repeat 1 30 0 7 1370 336 190 143 107 chr3 102897678 102897790 -56701993 - ID_B1 SINE B4 -104 120 5 7 1370 663 184 40 8 chr3 102897844 102897970 -56701813 - B3 SINE B2 -86 130 1 7 1370 404 185 0 69 chr3 102899114 102899201 -56700582 - B3 SINE B2 0 216 136 7 1370 723 142 0 0 chr3 102899295 102899415 -56700368 + (TA)n Simple_repeat Simple_repeat 1 120 0 7 1370 901 108 18 18 chr3 102899711 102899880 -56699903 + (TTCTC)n Simple_repeat Simple_repeat 4 172 0 7 1370 580 190 8 25 chr3 102899888 102900007 -56699776 - ID_B1 SINE B4 0 224 108 7 1370 400 270 45 84 chr3 102900007 102900040 -56699743 - B1F1 SINE Alu -1 146 1 7 1370 510 197 67 17 chr3 102900086 102900205 -56699578 - B1_Mus1 SINE Alu 0 148 24 7 1370 408 20 0 0 chr3 102900243 102900292 -56699491 + (TG)n Simple_repeat Simple_repeat 2 50 0 7 1370 678 145 179 0 chr3 102900314 102900431 -56699352 - B1_Mus1 SINE Alu -9 139 2 7 1370 408 40 0 0 chr3 102900444 102900494 -56699289 + (TTTC)n Simple_repeat Simple_repeat 3 52 0 7 1370 1141 91 9 126 chr3 102900502 102900717 -56699066 - B2_Mm1a SINE B2 -2 191 2 7 1370 730 50 0 38 chr3 102900851 102900956 -56698827 - B1_Mus2 SINE Alu 0 147 47 7 1370 212 59 29 0 chr3 102900969 102901003 -56698780 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 7 1370 1143 58 0 0 chr3 102901003 102901140 -56698643 - B1_Mus1 SINE Alu -11 137 1 7 1370 396 103 0 0 chr3 102901749 102901807 -56697976 + (A)n Simple_repeat Simple_repeat 1 58 0 7 1370 243 0 0 0 chr3 102901941 102901968 -56697815 + (TTA)n Simple_repeat Simple_repeat 2 28 0 7 1370 1172 70 0 0 chr3 102901971 102902113 -56697670 - B1_Mus1 SINE Alu -6 142 1 8 1370 351 96 0 0 chr3 102902125 102902177 -56697606 + (TC)n Simple_repeat Simple_repeat 1 52 0 8 1370 1291 76 16 0 chr3 102902177 102902362 -56697421 - B2_Mm2 SINE B2 -1 194 7 8 1370 686 204 13 26 chr3 102902367 102902518 -56697265 - B1_Mur4 SINE Alu 0 150 2 8 1370 243 88 0 0 chr3 102902772 102902806 -56696977 + (CACG)n Simple_repeat Simple_repeat 3 36 0 8 1370 752 139 99 50 chr3 102903718 102903900 -56695883 - B2_Mm2 SINE B2 -3 192 2 8 1370 1120 53 0 0 chr3 102904310 102904442 -56695341 + B1_Mus2 SINE Alu 1 132 -15 8 1370 524 231 107 0 chr3 102904590 102904711 -56695072 + B1_Mur2 SINE Alu 3 136 -13 8 1370 192 125 0 0 chr3 102904713 102904745 -56695038 + (CAGA)n Simple_repeat Simple_repeat 2 33 0 8 1370 215 61 30 0 chr3 102904765 102904798 -56694985 + (GGGAGA)n Simple_repeat Simple_repeat 4 37 0 8 1370 227 157 20 0 chr3 102905912 102905963 -56693820 + (GGGTG)n Simple_repeat Simple_repeat 3 54 0 8 1370 405 0 0 0 chr3 102907730 102907775 -56692008 + (TG)n Simple_repeat Simple_repeat 2 46 0 8 1370 520 300 46 21 chr3 102908024 102908218 -56691565 + ID_B1 SINE B4 26 224 0 8 1370 391 328 46 0 chr3 102908247 102908378 -56691405 + RSINE1 SINE B4 1 137 -28 8 1370 22 35 0 0 chr3 102908401 102908430 -56691353 + AT_rich Low_complexity Low_complexity 1 29 0 8 1370 465 307 87 0 chr3 102908430 102908580 -56691203 - RSINE1 SINE B4 0 165 3 8 1370 864 211 41 31 chr3 102908812 102909008 -56690775 + B3A SINE B2 1 198 0 8 1370 744 193 27 27 chr3 102909013 102909162 -56690621 + B1_Mur1 SINE Alu 1 149 0 8 1370 676 165 5 31 chr3 102909194 102909369 -56690414 + B3 SINE B2 28 191 -4 8 1370 553 191 0 50 chr3 102909434 102909471 -56690312 - B1_Mur3 SINE Alu 0 149 118 8 1370 423 0 0 0 chr3 102909471 102909518 -56690265 + (TG)n Simple_repeat Simple_repeat 2 48 0 8 1370 553 191 0 50 chr3 102909518 102909601 -56690182 - B1_Mur3 SINE Alu -32 117 35 8 1370 488 227 53 5 chr3 102909609 102909748 -56690035 - B1F SINE Alu -7 142 1 8 1370 287 248 122 49 chr3 102910036 102910159 -56689624 - MIR SINE MIR -37 225 94 8 1370 438 20 0 0 chr3 102910331 102910382 -56689401 + (GA)n Simple_repeat Simple_repeat 1 51 0 8 1370 334 265 57 29 chr3 102910633 102910738 -56689045 + PB1D7 SINE Alu 2 109 -11 8 1370 243 88 0 0 chr3 102910738 102910772 -56689011 + (CAAT)n Simple_repeat Simple_repeat 2 35 0 8 1370 407 310 102 11 chr3 102911898 102912074 -56687709 + ID_B1 SINE B4 3 194 -30 8 1370 344 306 33 8 chr3 102912134 102912256 -56687527 + ID_B1 SINE B4 1 125 -99 8 1370 848 226 108 0 chr3 102912292 102912487 -56687296 + B3 SINE B2 1 216 0 8 1370 321 240 33 0 chr3 102912666 102912773 -56687010 + B1_Mur1 SINE Alu 21 142 -7 8 1370 378 331 87 0 chr3 102912944 102913116 -56686667 + Charlie9 DNA MER1_type 2348 2534 -223 8 1370 189 0 0 0 chr3 102913182 102913203 -56686580 + (CG)n Simple_repeat Simple_repeat 1 21 0 8 1370 294 29 0 0 chr3 102913203 102913237 -56686546 + (TG)n Simple_repeat Simple_repeat 1 35 0 8 1370 325 176 13 63 chr3 102913815 102913894 -56685889 + PB1D10 SINE Alu 42 116 -1 8 1370 326 100 8 16 chr3 102914238 102914318 -56685465 + B1_Mur4 SINE Alu 40 150 0 8 1370 333 316 0 71 chr3 102915024 102915150 -56684633 + PB1D10 SINE Alu 1 117 0 8 1370 483 262 113 5 chr3 102915185 102915434 -56684349 + L1M5 LINE L1 5437 5714 -448 8 1370 1325 226 89 5 chr3 102916074 102916456 -56683327 - MTD LTR MaLR 0 419 6 8 1370 400 211 84 84 chr3 102916856 102917011 -56682772 - RSINE1 SINE B4 -10 155 1 8 1370 1232 54 0 0 chr3 102917046 102917193 -56682590 - B1_Mus2 SINE Alu 0 147 1 8 1370 349 283 0 62 chr3 102917562 102917675 -56682108 - PB1D10 SINE Alu -1 116 11 8 1370 698 240 93 6 chr3 102917699 102917871 -56681912 - B3A SINE B2 -9 189 3 8 1370 233 312 55 9 chr3 102918661 102918771 -56681012 + MIR SINE MIR 124 238 -24 8 1370 986 165 5 0 chr3 102918839 102919061 -56680722 + CT-rich Low_complexity Low_complexity 1 222 0 8 1370 1200 105 61 0 chr3 102919068 102919249 -56680534 - B2_Mm2 SINE B2 -3 192 1 8 1370 954 112 33 167 chr3 102919258 102919473 -56680310 - B2_Mm2 SINE B2 -9 186 1 8 1370 254 306 184 21 chr3 102919715 102919905 -56679878 + ID_B1 SINE B4 3 223 -1 8 1370 1157 49 12 30 chr3 102920314 102920481 -56679302 + B2_Mm2 SINE B2 1 164 -31 8 1370 194 167 12 49 chr3 102920493 102920575 -56679208 + GA-rich Low_complexity Low_complexity 5 83 0 8 1370 260 262 125 0 chr3 102920608 102920619 -56679164 - B1F2 SINE Alu -56 93 57 8 1370 292 196 18 0 chr3 102920619 102920675 -56679108 - MT2B LTR ERVL -364 237 181 8 1370 260 262 125 0 chr3 102920675 102920688 -56679095 - B1F2 SINE Alu -56 56 4 8 1370 1728 124 42 32 chr3 102921220 102921529 -56678254 + RMER4A LTR ERVK 155 466 0 8 1370 393 174 211 0 chr3 102921946 102922055 -56677728 + B1F2 SINE Alu 10 141 -8 8 1370 386 259 0 0 chr3 102922601 102922682 -56677101 + ID4_ SINE ID 1 81 -2 8 1370 821 59 168 0 chr3 102923401 102923520 -56676263 - B1_Mus1 SINE Alu -9 139 1 8 1370 520 292 102 0 chr3 102923725 102923872 -56675911 - RSINE1 SINE B4 -2 163 2 8 1370 312 215 62 45 chr3 102923986 102924010 -56675773 - B3A SINE B2 0 198 175 8 1370 207 0 0 0 chr3 102924010 102924033 -56675750 + (TG)n Simple_repeat Simple_repeat 1 23 0 8 1370 396 0 0 0 chr3 102924033 102924076 -56675707 + (GA)n Simple_repeat Simple_repeat 1 44 0 8 1370 312 215 62 45 chr3 102924076 102924162 -56675621 - B3A SINE B2 -24 174 86 8 1370 799 180 0 28 chr3 102924225 102924368 -56675415 - B1_Mur2 SINE Alu -10 139 1 8 1370 915 228 47 0 chr3 102924527 102924720 -56675063 + B3 SINE B2 1 202 -14 8 1370 463 264 32 39 chr3 102924720 102924874 -56674909 + L1MEf LINE L1 1415 1567 -4633 8 1370 335 129 32 0 chr3 102925193 102925255 -56674528 + CT-rich Low_complexity Low_complexity 2 65 0 8 1370 1150 68 0 7 chr3 102926321 102926469 -56673314 - B1_Mm SINE Alu 0 147 1 8 1370 244 308 123 19 chr3 102926687 102926793 -56672990 + PB1 SINE Alu 7 123 -4 8 1370 1167 68 0 0 chr3 102926876 102927023 -56672760 - B1_Mus1 SINE Alu 0 148 2 8 1370 23 0 0 0 chr3 102927024 102927047 -56672736 + AT_rich Low_complexity Low_complexity 1 23 0 8 1370 183 42 0 0 chr3 102927076 102927100 -56672683 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 8 1370 770 137 17 8 chr3 102927105 102927223 -56672560 - PB1D9 SINE Alu 0 120 2 8 1370 1181 61 0 0 chr3 102927408 102927556 -56672227 - B1_Mus1 SINE Alu 0 148 1 8 1370 1812 167 66 16 chr3 102927588 102927965 -56671818 + MTD LTR MaLR 10 405 -14 8 1370 268 231 13 0 chr3 102928379 102928457 -56671326 + (TG)n Simple_repeat Simple_repeat 1 79 0 8 1370 438 208 122 9 chr3 102928568 102928675 -56671108 + PB1D9 SINE Alu 2 120 0 8 1370 934 202 39 19 chr3 102929056 102929263 -56670520 - B3 SINE B2 -4 212 2 8 1370 312 313 0 22 chr3 102929263 102929397 -56670386 - L1M5 LINE L1 -1386 4760 4630 8 1370 1217 61 0 0 chr3 102929397 102929544 -56670239 + B1_Mm SINE Alu 1 147 0 8 1370 201 74 0 0 chr3 102929544 102929571 -56670212 + (A)n Simple_repeat Simple_repeat 1 27 0 8 1370 374 263 15 22 chr3 102929572 102929708 -56670075 - L1M5 LINE L1 -1503 4643 4509 8 1370 204 365 0 19 chr3 102929725 102929831 -56669952 + CT-rich Low_complexity Low_complexity 6 109 0 8 1370 327 221 52 0 chr3 102929832 102929909 -56669874 - PB1D10 SINE Alu -28 89 9 8 1370 251 206 143 0 chr3 102930059 102930122 -56669661 - B1_Mus2 SINE Alu -53 96 25 8 1370 1049 218 19 9 chr3 102930148 102930361 -56669422 - B3 SINE B2 -1 215 1 8 1370 325 62 24 59 chr3 102930373 102930458 -56669325 + (TTTTTG)n Simple_repeat Simple_repeat 2 83 0 8 1370 826 28 0 0 chr3 102930463 102930570 -56669213 - B1_Mm SINE Alu 0 147 41 8 1370 745 270 23 64 chr3 102930521 102930786 -56668997 - B4A SINE B4 -20 272 19 8 1370 250 164 15 62 chr3 102930918 102930983 -56668800 + Charlie12 DNA MER1_type 1252 1313 -1560 8 1370 259 100 0 0 chr3 102931608 102931648 -56668135 - L1MB5 LINE L1 -7 6167 6128 8 1370 837 230 58 31 chr3 102931693 102931967 -56667816 + B4A SINE B4 1 278 -14 8 1370 298 253 55 0 chr3 102933523 102933614 -56666169 + B1F SINE Alu 2 97 -52 8 1370 21 57 0 0 chr3 102933702 102933737 -56666046 + AT_rich Low_complexity Low_complexity 1 35 0 8 1370 612 40 0 0 chr3 102934072 102934147 -56665636 + (TG)n Simple_repeat Simple_repeat 1 75 0 8 1370 198 103 0 0 chr3 102934154 102934183 -56665600 + (CCTG)n Simple_repeat Simple_repeat 1 29 0 8 1370 189 0 0 0 chr3 102934731 102934752 -56665031 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 8 1370 826 80 100 39 chr3 102934752 102934882 -56664901 - B1_Mur3 SINE Alu -10 139 2 8 1370 485 274 8 8 chr3 102936443 102936561 -56663222 + B1F SINE Alu 18 135 -14 8 1370 738 215 29 11 chr3 102936670 102936844 -56662939 + B3 SINE B2 6 182 -34 8 1370 210 37 0 0 chr3 102936873 102936900 -56662883 + (TTTG)n Simple_repeat Simple_repeat 3 29 0 8 1370 754 152 53 0 chr3 102936901 102937033 -56662750 - B1_Mur3 SINE Alu -2 147 9 8 1370 950 190 44 77 chr3 102938128 102938179 -56661604 - RCHARR1 DNA MER1_type 0 974 938 8 1370 750 143 14 70 chr3 102938179 102938322 -56661461 - B1_Mur1 SINE Alu -10 139 5 8 1370 950 190 44 77 chr3 102938322 102938543 -56661240 - RCHARR1 DNA MER1_type -37 937 711 8 1370 512 149 23 0 chr3 102938539 102938626 -56661157 + B1_Mur1 SINE Alu 50 138 -11 8 1370 368 174 81 0 chr3 102939996 102940082 -56659701 - RCHARR1 DNA MER1_type -360 614 522 8 1370 492 235 10 0 chr3 102940150 102940252 -56659531 - B3A SINE B2 -95 103 1 9 1370 1474 231 99 32 chr3 102940253 102940718 -56659065 - RCHARR1 DNA MER1_type -437 537 42 8 1370 459 52 0 0 chr3 102942381 102942439 -56657344 + (GA)n Simple_repeat Simple_repeat 2 59 0 9 1370 588 29 0 0 chr3 102942439 102942509 -56657274 + (GGAA)n Simple_repeat Simple_repeat 4 73 0 9 1370 762 145 12 99 chr3 102942574 102942735 -56657048 - B1_Mur3 SINE Alu -2 147 1 9 1370 1256 34 0 0 chr3 102942776 102942922 -56656861 + B1_Mus1 SINE Alu 1 146 -2 9 1370 222 37 0 0 chr3 102942922 102942949 -56656834 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 9 1370 702 111 0 0 chr3 102944476 102944584 -56655199 - B1_Mus2 SINE Alu 0 147 40 9 1370 747 241 0 0 chr3 102944589 102944763 -56655020 + (CCTG)n Simple_repeat Simple_repeat 2 175 0 9 1370 302 93 36 18 chr3 102944786 102944841 -56654942 - ID_B1 SINE B4 -79 145 90 9 1370 387 56 0 0 chr3 102944795 102944849 -56654934 - B1_Mus1 SINE Alu -93 55 2 9 1370 292 222 120 10 chr3 102945285 102945385 -56654398 - ORR1E LTR MaLR -248 111 1 9 1370 211 300 50 0 chr3 102945480 102945560 -56654223 - B1F SINE Alu -26 123 40 9 1370 281 277 26 35 chr3 102945725 102945841 -56653942 - PB1D10 SINE Alu -1 116 2 9 1370 904 138 72 0 chr3 102946723 102946861 -56652922 + B1_Mur2 SINE Alu 1 148 -1 9 1370 629 232 68 31 chr3 102946867 102947058 -56652725 - B3A SINE B2 0 198 1 9 1370 990 76 0 0 chr3 102947321 102947466 -56652317 + (CA)n Simple_repeat Simple_repeat 2 146 0 9 1370 527 211 46 0 chr3 102947572 102947681 -56652102 + B1F SINE Alu 36 149 0 9 1370 508 288 151 57 chr3 102947978 102948243 -56651540 - B4 SINE B4 -1 291 2 9 1370 633 161 16 56 chr3 102948303 102948428 -56651355 + PB1D9 SINE Alu 1 120 0 9 1370 718 209 0 33 chr3 102948453 102948606 -56651177 + B1F SINE Alu 2 149 0 9 1370 1385 81 11 16 chr3 102948719 102948908 -56650875 - B2_Mm1t SINE B2 -4 189 2 9 1370 335 278 52 22 chr3 102948949 102949085 -56650698 - ID_B1 SINE B4 0 224 85 9 1370 258 221 15 140 chr3 102949375 102949508 -56650275 - B1_Mur1 SINE Alu -1 148 3 9 1370 23 0 0 0 chr3 102949608 102949631 -56650152 + AT_rich Low_complexity Low_complexity 1 23 0 9 1370 219 36 0 0 chr3 102949722 102949750 -56650033 + (CA)n Simple_repeat Simple_repeat 2 29 0 9 1370 297 279 161 10 chr3 102949986 102950185 -56649598 + Tigger7 DNA MER2_type 2135 2363 -128 9 1370 225 239 74 32 chr3 102951522 102951617 -56648166 - L1M LINE L1 -776 5403 5305 9 1370 1232 113 38 0 chr3 102951798 102951983 -56647800 + B2_Mm2 SINE B2 2 193 -2 9 1370 449 193 226 15 chr3 102952082 102952219 -56647564 - B3A SINE B2 -29 169 4 9 1370 1307 97 49 0 chr3 102952383 102952568 -56647215 - B2_Mm2 SINE B2 0 195 2 9 1370 296 188 130 0 chr3 102953242 102953311 -56646472 - PB1D10 SINE Alu -11 106 29 9 1370 197 77 0 49 chr3 102953508 102953549 -56646234 + (TTTTTG)n Simple_repeat Simple_repeat 2 40 0 9 1370 1247 34 0 0 chr3 102953581 102953727 -56646056 - B1_Mus2 SINE Alu 0 147 2 9 1370 306 356 30 0 chr3 102953827 102953928 -56645855 - RSINE1 SINE B4 -60 105 2 9 1370 234 0 0 0 chr3 102954080 102954106 -56645677 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 9 1370 380 280 167 9 chr3 102954106 102954214 -56645569 - B1F SINE Alu -11 138 14 9 1370 555 213 19 0 chr3 102954364 102954472 -56645311 + PB1D10 SINE Alu 2 111 -6 9 1370 469 279 44 0 chr3 102954653 102954789 -56644994 - B1F SINE Alu 0 149 8 9 1370 863 249 5 10 chr3 102954935 102955134 -56644649 + B3A SINE B2 1 198 0 9 1370 521 278 8 0 chr3 102955551 102955684 -56644099 - ID_B1 SINE B4 0 224 91 9 1370 368 307 68 14 chr3 102956764 102956934 -56642849 + B3A SINE B2 1 181 -35 9 1370 378 257 131 70 chr3 102956937 102957196 -56642587 - B4A SINE B4 -16 276 2 9 1370 672 225 54 38 chr3 102957757 102957955 -56641828 + B3 SINE B2 2 216 0 9 1370 500 264 96 0 chr3 102958648 102958773 -56641010 + RSINE1 SINE B4 13 149 -16 9 1370 702 173 0 0 chr3 102958887 102959020 -56640763 + CT-rich Low_complexity Low_complexity 1 133 0 9 1370 561 203 41 83 chr3 102959024 102959169 -56640614 - B1_Mur3 SINE Alu -8 141 3 9 1370 228 306 105 53 chr3 102959051 102959186 -56640597 - B4 SINE B4 -83 209 65 9 1370 959 214 48 0 chr3 102959186 102959392 -56640391 - B3 SINE B2 0 216 1 9 1370 228 306 105 53 chr3 102959392 102959408 -56640375 - B4 SINE B4 -228 64 50 9 1370 585 271 14 7 chr3 102959521 102959662 -56640121 + RSINE1 SINE B4 5 146 -19 9 1370 294 106 0 0 chr3 102959669 102959716 -56640067 + (CA)n Simple_repeat Simple_repeat 2 48 0 9 1370 25 31 0 0 chr3 102959727 102959759 -56640024 + AT_rich Low_complexity Low_complexity 1 32 0 9 1370 423 0 0 0 chr3 102960335 102960382 -56639401 + (CA)n Simple_repeat Simple_repeat 1 47 0 9 1370 587 168 23 53 chr3 102960476 102960608 -56639175 - B1_Mus2 SINE Alu -15 132 5 9 1370 21 71 0 0 chr3 102960917 102960959 -56638824 + AT_rich Low_complexity Low_complexity 1 42 0 9 1370 282 264 56 0 chr3 102960968 102961040 -56638743 + B3A SINE B2 2 77 -121 9 1370 433 259 33 33 chr3 102961088 102961208 -56638575 + PB1D9 SINE Alu 1 120 0 9 1370 327 197 14 14 chr3 102961260 102961332 -56638451 + PB1 SINE Alu 23 94 -33 9 1370 494 198 0 78 chr3 102961855 102961879 -56637904 + B3 SINE B2 9 32 -184 9 1370 186 43 0 0 chr3 102961885 102961908 -56637875 + (TTG)n Simple_repeat Simple_repeat 2 24 0 9 1370 1263 91 5 36 chr3 102961908 102962094 -56637689 - B2_Mm2 SINE B2 -14 181 1 9 1370 494 225 23 94 chr3 102962094 102962250 -56637533 + B3 SINE B2 33 177 -18 9 1370 1164 82 0 0 chr3 102962275 102962422 -56637361 + B1_Mus2 SINE Alu 1 147 0 9 1370 195 42 0 0 chr3 102962422 102962446 -56637337 + (A)n Simple_repeat Simple_repeat 1 24 0 9 1370 1172 145 168 17 chr3 102962552 102962654 -56637129 - RMER1B Other Other 0 1066 957 9 1370 255 61 0 0 chr3 102962654 102962687 -56637096 + (TAAAA)n Simple_repeat Simple_repeat 4 36 0 9 1370 1172 145 168 17 chr3 102962687 102962822 -56636961 - RMER1B Other Other -110 956 793 9 1370 346 165 8 192 chr3 102962830 102962950 -56636833 + MT2B LTR ERVL 167 264 -337 9 1370 811 89 8 75 chr3 102962845 102962978 -56636805 + B1_Mur3 SINE Alu 19 142 -7 9 1370 525 16 0 0 chr3 102962993 102963055 -56636728 + (TG)n Simple_repeat Simple_repeat 1 62 0 9 1370 285 271 40 40 chr3 102963066 102963166 -56636617 - RSINE1 SINE B4 -21 144 45 9 1370 2241 184 105 0 chr3 102963438 102963915 -56635868 - RLTR11A2 LTR ERVK 0 527 1 9 1370 451 213 98 8 chr3 102963954 102964077 -56635706 + RSINE1 SINE B4 9 142 -23 9 1370 195 100 0 0 chr3 102964086 102964116 -56635667 + (CA)n Simple_repeat Simple_repeat 1 30 0 9 1370 252 0 0 0 chr3 102964126 102964154 -56635629 + (GA)n Simple_repeat Simple_repeat 1 28 0 9 1370 464 286 68 0 chr3 102964540 102964746 -56635037 - ID_B1 SINE B4 -3 221 2 9 1370 576 0 0 0 chr3 102965898 102965962 -56633821 + (GA)n Simple_repeat Simple_repeat 1 64 0 9 1370 343 111 184 26 chr3 102966419 102966527 -56633256 - B2_Mm2 SINE B2 -1 194 46 9 1370 1240 122 6 0 chr3 102966611 102966791 -56632992 - B2_Mm2 SINE B2 -14 181 1 9 1370 207 88 0 0 chr3 102967251 102967285 -56632498 + (A)n Simple_repeat Simple_repeat 1 34 0 9 1370 613 186 26 0 chr3 102967366 102967479 -56632304 + B1_Mur1 SINE Alu 34 149 0 9 1370 1062 103 0 14 chr3 102967483 102967631 -56632152 + B1_Mus1 SINE Alu 1 146 -2 9 1370 225 119 0 0 chr3 102967632 102967674 -56632109 + (A)n Simple_repeat Simple_repeat 1 42 0 9 1370 274 204 17 104 chr3 102967735 102967763 -56632020 + MT2B LTR ERVL 144 161 -440 9 1370 277 210 82 91 chr3 102967763 102967873 -56631910 + PB1D9 SINE Alu 2 110 -10 9 1370 573 271 0 0 chr3 102968464 102968586 -56631197 - ID_B1 SINE B4 -15 209 88 9 1370 1491 167 199 0 chr3 102969202 102969508 -56630275 - ORR1B2 LTR MaLR 0 367 1 9 1370 613 274 12 44 chr3 102969647 102969807 -56629976 + RSINE1 SINE B4 11 165 0 9 1370 250 316 13 0 chr3 102969875 102969954 -56629829 + ID4 SINE ID 3 82 -1 9 1370 1858 85 92 3 chr3 102969969 102970263 -56629520 - ORR1A2 LTR MaLR -7 320 1 9 1370 225 217 0 104 chr3 102970540 102970607 -56629176 - Charlie4z DNA MER1_type -69 98 39 9 1370 445 172 335 6 chr3 102971111 102971275 -56628508 + URR1B DNA MER1_type 1 218 -7 9 1370 338 276 157 18 chr3 102971393 102971559 -56628224 - ORR1E LTR MaLR -162 197 9 9 1370 788 137 0 151 chr3 102971930 102972102 -56627681 - B1_Mur3 SINE Alu -1 148 3 9 1370 211 301 268 0 chr3 102972600 102972723 -56627060 - MIRb SINE MIR -24 244 89 9 1370 439 204 427 19 chr3 102973707 102973971 -56625812 - ORR1D2 LTR MaLR 0 370 1 9 1370 4106 194 95 4 chr3 102974290 102975118 -56624665 - Lx5 LINE L1 -3 7047 6144 9 1370 180 0 0 0 chr3 102975465 102975485 -56624298 + (A)n Simple_repeat Simple_repeat 1 20 0 9 1370 198 0 0 0 chr3 102976203 102976225 -56623558 + (TG)n Simple_repeat Simple_repeat 2 23 0 9 1370 520 262 239 15 chr3 102976551 102976815 -56622968 + RCHARR1 DNA MER1_type 3 325 -649 9 1370 198 0 0 0 chr3 102977049 102977071 -56622712 + (T)n Simple_repeat Simple_repeat 1 22 0 9 1370 807 72 165 8 chr3 102977370 102977497 -56622286 + B1_Mus2 SINE Alu 1 147 0 9 1370 1266 103 23 0 chr3 102977514 102977688 -56622095 - B2_Mm2 SINE B2 -14 181 4 9 1370 1221 94 22 6 chr3 102977721 102977903 -56621880 + B2_Mm2 SINE B2 2 186 -9 1 1370 396 229 18 35 chr3 102978874 102978992 -56620791 + PB1D7 SINE Alu 9 127 0 1 1370 246 220 0 17 chr3 102978992 102979052 -56620731 + MER82 DNA MER2_type 36 94 -559 1 1370 288 287 32 11 chr3 102981631 102981726 -56618057 + PB1D10 SINE Alu 19 115 -2 1 1370 2065 129 139 45 chr3 102982834 102982898 -56616885 + RMER4A LTR ERVK 1 64 -402 1 1370 1662 37 0 0 chr3 102982898 102983089 -56616694 + B2_Mm1a SINE B2 2 192 -1 1 1370 2065 129 139 45 chr3 102983089 102983447 -56616336 + RMER4A LTR ERVK 65 463 -3 1 1370 304 285 104 37 chr3 102984957 102985121 -56614662 + MTE-int LTR MaLR 329 503 -1077 1 1370 554 319 101 50 chr3 102985324 102985720 -56614063 + MTE-int LTR MaLR 1126 1541 -39 1 1370 5298 154 24 32 chr3 102985865 102986765 -56613018 - MERVL_2A-int LTR ERVL -643 5118 4226 1 1370 2386 142 105 63 chr3 102986766 102987271 -56612512 - RLTR26 LTR ERVK 0 642 117 1 1370 8889 225 44 30 chr3 102987274 102988497 -56611286 - MYSERV6-int LTR ERVK -1722 4828 3575 1 1370 1500 78 16 0 chr3 102988497 102988689 -56611094 - B2_Mm2 SINE B2 0 195 1 1 1370 8889 206 36 25 chr3 102988689 102988768 -56611015 - MYSERV6-int LTR ERVK -5161 3798 3720 1 1370 201 121 0 0 chr3 102988768 102988801 -56610982 + (TG)n Simple_repeat Simple_repeat 2 34 0 1 1370 8889 206 36 25 chr3 102988801 102989926 -56609857 - MYSERV6-int LTR ERVK -5240 3719 2587 1 1370 395 115 99 44 chr3 102989929 102990020 -56609763 - B2_Mm2 SINE B2 -9 186 91 1 1370 634 127 25 0 chr3 102990020 102990138 -56609645 + B2_Mm1t SINE B2 73 193 0 1 1370 574 258 49 0 chr3 102990138 102990301 -56609482 - MYSERV6-int LTR ERVK -8071 888 718 1 1370 688 226 202 6 chr3 102990749 102990927 -56608856 - B3 SINE B2 -3 213 1 1 1370 253 226 19 0 chr3 102990957 102991010 -56608773 - MYSERV6-int LTR ERVK -8788 171 118 1 1370 318 50 0 0 chr3 102991054 102991094 -56608689 + (TC)n Simple_repeat Simple_repeat 1 40 0 1 1370 1332 90 6 0 chr3 102991115 102991293 -56608490 - B2_Mm1t SINE B2 -14 179 1 1 1370 1942 193 72 26 chr3 102991361 102991727 -56608056 + RLTR16 LTR ERVK 27 400 -105 1 1370 375 23 0 0 chr3 102991727 102991771 -56608012 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 1370 1942 193 72 26 chr3 102991771 102991862 -56607921 + RLTR16 LTR ERVK 401 504 -1 1 1370 1192 56 0 0 chr3 102991897 102992040 -56607743 - B1_Mus1 SINE Alu -5 143 1 1 1370 1481 62 5 15 chr3 102992041 102992236 -56607547 - B2_Mm1a SINE B2 0 193 1 1 1370 461 288 70 50 chr3 102993123 102993446 -56606337 - RLTR15 LTR ERVK -56 303 59 1 1370 1282 38 0 0 chr3 102993453 102993613 -56606170 + B2_Mm1a SINE B2 1 160 -33 1 1370 234 81 0 0 chr3 102993613 102993650 -56606133 + (TAAA)n Simple_repeat Simple_repeat 3 39 0 1 1370 291 197 0 0 chr3 102993686 102993752 -56606031 - RLTR15 LTR ERVK -458 70 5 1 1370 399 263 0 0 chr3 102993876 102993975 -56605808 + PB1D10 SINE Alu 10 108 -9 1 1370 1544 62 5 0 chr3 102994059 102994251 -56605532 + B2_Mm1a SINE B2 1 193 0 1 1370 721 279 57 20 chr3 102994363 102994663 -56605120 - RMER5 LTR ERV1 -4 530 220 1 1370 1016 122 0 39 chr3 102994999 102995152 -56604631 + B1_Mur4 SINE Alu 3 149 -1 1 1370 242 95 0 23 chr3 102995162 102995205 -56604578 + (GAAAA)n Simple_repeat Simple_repeat 2 43 0 1 1370 1663 223 107 225 chr3 102995229 102996046 -56603737 + RMER6C LTR ERVK 1 720 0 1 1370 216 264 0 0 chr3 102996068 102996121 -56603662 + PB1D10 SINE Alu 45 97 -20 1 1370 321 196 65 86 chr3 102996128 102996212 -56603571 - B1_Mur2 SINE Alu 0 120 32 1 1370 2610 97 166 2 chr3 102996212 102996669 -56603114 + RLTR47_MM LTR ERV1 1 532 0 1 1370 321 167 70 93 chr3 102996669 102996696 -56603087 - B1_Mur2 SINE Alu -118 31 11 1 1370 266 317 10 0 chr3 102996724 102996828 -56602955 + HAL1 LINE L1 1483 1587 -920 1 1370 276 203 15 59 chr3 102996906 102996974 -56602809 + RMER10A LTR ERVL 1 65 -377 1 1370 1030 126 48 7 chr3 102996974 102997254 -56602529 - RLTR45 LTR ERVK 0 482 144 1 1370 995 218 138 15 chr3 102997251 102997581 -56602202 + RMER10A LTR ERVL 59 431 -11 1 1370 1331 90 37 11 chr3 102997581 102997771 -56602012 - B2_Mm2 SINE B2 0 195 1 1 1370 342 0 0 0 chr3 102998369 102998407 -56601376 + (TTA)n Simple_repeat Simple_repeat 1 38 0 1 1370 656 224 7 14 chr3 102998413 102998558 -56601225 - B1_Mus2 SINE Alu 0 147 4 1 1370 555 261 166 41 chr3 102998687 102999016 -56600767 + MLT1D LTR MaLR 115 505 0 1 1370 1206 51 0 19 chr3 102999070 102999231 -56600552 + B2_Mm2 SINE B2 1 158 -37 1 1370 216 0 0 0 chr3 102999232 102999256 -56600527 + (TAAA)n Simple_repeat Simple_repeat 3 26 0 1 1370 801 193 0 7 chr3 102999298 102999444 -56600339 + B1_Mur3 SINE Alu 5 149 0 1 1370 216 0 0 0 chr3 102999447 102999471 -56600312 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 1 1370 1207 54 0 0 chr3 102999673 102999820 -56599963 - B1_Mus1 SINE Alu 0 148 2 1 1370 255 234 62 0 chr3 102999928 102999992 -56599791 + ID4 SINE ID 5 72 -11 1 1370 426 53 0 0 chr3 103000763 103000820 -56598963 + (TATG)n Simple_repeat Simple_repeat 2 58 0 1 1370 649 189 26 77 chr3 103000829 103000984 -56598799 - B1_Mur1 SINE Alu 0 149 3 2 1370 211 171 0 47 chr3 103001324 103001367 -56598416 + CT-rich Low_complexity Low_complexity 3 43 0 3 1370 228 232 236 79 chr3 103001388 103001466 -56598317 + MLT1A1 LTR MaLR 255 357 -51 4 1370 888 106 14 28 chr3 103001466 103001477 -56598306 - B1_Mur4 SINE Alu -3 147 138 5 1370 252 0 0 0 chr3 103001477 103001505 -56598278 + (TTTTG)n Simple_repeat Simple_repeat 1 28 0 6 1370 937 58 1 16 chr3 103001505 103001638 -56598145 - B1_Mm SINE Alu -13 137 5 5 1370 251 188 182 30 chr3 103001600 103001666 -56598117 - B3 SINE B2 -140 76 1 7 1370 408 274 76 116 chr3 103002049 103002152 -56597631 - B3 SINE B2 -6 210 116 8 1370 848 110 102 0 chr3 103002152 103002279 -56597504 + RMER6D LTR ERVK 1 140 -580 9 1370 393 219 0 0 chr3 103002288 103002361 -56597422 + RMER6D LTR ERVK 72 144 -576 1 1370 408 184 0 73 chr3 103002405 103002487 -56597296 + RMER6D LTR ERVK 72 147 -573 1 1370 243 179 0 0 chr3 103002483 103002522 -56597261 + RMER6D LTR ERVK 72 110 -610 1 1370 393 199 0 0 chr3 103002522 103002600 -56597183 + RMER6D LTR ERVK 72 144 -576 1 1370 453 178 0 0 chr3 103002600 103002673 -56597110 + RMER6D LTR ERVK 72 144 -576 1 1370 253 175 0 0 chr3 103002677 103002717 -56597066 + RMER6D LTR ERVK 71 110 -610 1 1370 419 174 0 0 chr3 103002717 103002786 -56596997 + RMER6D LTR ERVK 72 140 -580 1 1370 449 171 0 0 chr3 103002794 103002864 -56596919 + RMER6D LTR ERVK 71 140 -580 1 1370 3444 141 99 26 chr3 103002873 103003152 -56596631 + RMER6D LTR ERVK 72 349 -371 1 1370 306 0 0 0 chr3 103003152 103003186 -56596597 + (TG)n Simple_repeat Simple_repeat 2 35 0 1 1370 3444 141 99 26 chr3 103003186 103003250 -56596533 + RMER6D LTR ERVK 350 421 -299 1 1370 3873 120 3 21 chr3 103003250 103003827 -56595956 + RMER2 LTR ERV1 1 567 0 1 1370 3444 141 99 26 chr3 103003827 103004087 -56595696 + RMER6D LTR ERVK 422 720 0 1 1370 517 198 0 65 chr3 103004087 103004190 -56595593 - B3 SINE B2 -119 97 2 1 1370 443 245 98 0 chr3 103004810 103004912 -56594871 + PB1 SINE Alu 9 120 -7 1 1370 246 271 85 0 chr3 103004920 103004979 -56594804 + tRNA-Ala-GCY_ tRNA tRNA 1 64 -11 1 1370 261 229 100 0 chr3 103004926 103004991 -56594792 + ID4 SINE ID 13 85 -67 2 1370 2389 97 112 8 chr3 103005042 103005407 -56594376 + RLTR9D LTR ERVK 1 403 0 2 1370 551 289 31 77 chr3 103005407 103005484 -56594299 - B3 SINE B2 -6 210 136 2 1370 1118 35 35 14 chr3 103005484 103005619 -56594164 + B1_Mus1 SINE Alu 2 139 -9 2 1370 224 30 0 29 chr3 103005619 103005653 -56594130 + (CAAAC)n Simple_repeat Simple_repeat 2 34 0 2 1370 551 289 31 77 chr3 103005661 103005771 -56594012 - B3 SINE B2 -81 135 31 2 1370 439 141 14 0 chr3 103005772 103005843 -56593940 + MTC LTR MaLR 10 81 -340 2 1370 1214 109 11 28 chr3 103005843 103006023 -56593760 + B2_Mm1t SINE B2 3 179 -14 2 1370 361 117 12 49 chr3 103006055 103006129 -56593654 + B2_Mm2 SINE B2 47 121 -95 2 1370 676 181 53 0 chr3 103006133 103006266 -56593517 + MTC LTR MaLR 28 167 -254 2 1370 458 250 133 13 chr3 103006267 103006425 -56593358 - B3A SINE B2 -17 181 5 2 1370 1463 51 6 6 chr3 103006834 103007013 -56592770 - B2_Mm2 SINE B2 -16 179 1 3 1370 592 128 261 17 chr3 103007094 103007213 -56592570 - B1_Mur3 SINE Alu -1 148 1 3 1370 423 0 0 0 chr3 103007216 103007263 -56592520 + (TA)n Simple_repeat Simple_repeat 2 48 0 3 1370 610 228 0 52 chr3 103007299 103007452 -56592331 + B1_Mus2 SINE Alu 2 146 -1 3 1370 30 77 0 0 chr3 103007452 103007517 -56592266 + AT_rich Low_complexity Low_complexity 1 65 0 3 1370 685 295 28 28 chr3 103007578 103007794 -56591989 - B3A SINE B2 0 216 1 3 1370 1191 55 0 14 chr3 103008025 103008173 -56591610 + B1_Mus2 SINE Alu 2 147 0 3 1370 294 228 89 89 chr3 103008229 103008240 -56591543 + MT2B LTR ERVL 139 181 -420 3 1370 754 179 12 105 chr3 103008248 103008359 -56591424 + B1_Mur2 SINE Alu 3 101 -48 3 1370 294 228 89 89 chr3 103008318 103008330 -56591453 + MT2B LTR ERVL 182 239 -362 3 1370 2106 110 65 132 chr3 103008359 103008471 -56591312 + RLTR23 LTR ERV1 1 100 -330 3 1370 329 0 0 24 chr3 103008471 103008513 -56591270 + (CAAAA)n Simple_repeat Simple_repeat 4 44 0 4 1370 2106 110 65 132 chr3 103008513 103008861 -56590922 + RLTR23 LTR ERV1 101 430 0 3 1370 754 179 12 105 chr3 103008861 103008911 -56590872 + B1_Mur2 SINE Alu 102 149 0 3 1370 473 241 0 119 chr3 103008944 103009069 -56590714 + ID_B1 SINE B4 90 198 -26 4 1370 1201 71 143 0 chr3 103009069 103009237 -56590546 - B2_Mm2 SINE B2 -1 194 3 4 1370 473 241 0 119 chr3 103009243 103009262 -56590521 + ID_B1 SINE B4 199 222 -2 4 1370 1275 27 0 0 chr3 103009268 103009415 -56590368 + B1_Mus2 SINE Alu 1 147 0 4 1370 33 25 0 0 chr3 103009572 103009612 -56590171 + AT_rich Low_complexity Low_complexity 1 40 0 4 1370 392 281 10 0 chr3 103009669 103009765 -56590018 - PB1D10 SINE Alu -19 98 2 4 1370 707 238 49 146 chr3 103009868 103010040 -56589743 + ID_B1 SINE B4 1 179 -45 4 1370 1585 47 5 0 chr3 103010040 103010231 -56589552 - B2_Mm1t SINE B2 0 193 2 4 1370 707 238 49 146 chr3 103010231 103010246 -56589537 + ID_B1 SINE B4 180 180 -44 4 1370 1589 48 5 0 chr3 103010246 103010435 -56589348 - B2_Mm1a SINE B2 -1 192 3 4 1370 707 238 49 146 chr3 103010435 103010492 -56589291 + ID_B1 SINE B4 180 222 -2 4 1370 300 311 147 53 chr3 103011053 103011243 -56588540 - LTR16A LTR ERVL -13 438 231 4 1370 1003 183 131 37 chr3 103011207 103011277 -56588506 + RMER10B LTR ERVL 132 200 -198 5 1370 528 16 0 0 chr3 103011277 103011338 -56588445 + (TCC)n Simple_repeat Simple_repeat 2 62 0 5 1370 1003 183 131 37 chr3 103011338 103011511 -56588272 + RMER10B LTR ERVL 201 397 -1 5 1370 222 211 0 0 chr3 103011513 103011551 -56588232 + RSINE1 SINE B4 95 132 -33 5 1370 684 151 66 25 chr3 103011701 103011823 -56587960 - B1_Mur4 SINE Alu -2 148 22 5 1370 230 183 267 0 chr3 103011929 103011989 -56587794 - RLTR18 LTR ERVK -339 277 202 5 1370 393 241 201 40 chr3 103011984 103012183 -56587600 - RLTR18B LTR ERVK -257 255 25 5 1370 580 242 98 0 chr3 103012194 103012326 -56587457 + B1_Mur3 SINE Alu 5 149 0 5 1370 329 291 31 56 chr3 103012343 103012453 -56587330 + PB1D10 SINE Alu 12 117 0 5 1370 505 235 144 56 chr3 103012473 103012653 -56587130 + ID_B1 SINE B4 8 203 -21 5 1370 315 241 0 24 chr3 103013083 103013168 -56586615 + (TG)n Simple_repeat Simple_repeat 2 84 0 5 1370 205 324 42 0 chr3 103013272 103013343 -56586440 - MIR3 SINE MIR -21 187 114 6 1370 1994 142 115 39 chr3 103013798 103014215 -56585568 + RMER16 LTR ERVK 1 533 0 6 1370 244 135 27 0 chr3 103014391 103014428 -56585355 + ORR1B2 LTR MaLR 1 38 -346 6 1370 1265 119 45 5 chr3 103014456 103014658 -56585125 + ORR1B2 LTR MaLR 150 359 -8 6 1370 816 138 46 0 chr3 103014691 103014821 -56584962 - RLTR41 LTR ERV1 -102 344 209 6 1370 1194 48 0 13 chr3 103014821 103014970 -56584813 + B1_Mm SINE Alu 1 147 0 6 1370 330 65 32 16 chr3 103014971 103015034 -56584749 + (CAAAA)n Simple_repeat Simple_repeat 2 65 0 6 1370 851 223 6 39 chr3 103015035 103015217 -56584566 - RLTR41 LTR ERV1 -218 228 53 6 1370 589 189 134 145 chr3 103015197 103015376 -56584407 - RLTR41 LTR ERV1 -269 177 1 6 1370 433 231 28 19 chr3 103016447 103016553 -56583230 + RLTR23 LTR ERV1 324 430 0 6 1370 436 270 0 34 chr3 103016678 103016797 -56582986 - PB1D9 SINE Alu -3 117 3 6 1370 361 261 119 42 chr3 103016855 103017023 -56582760 - B3A SINE B2 -16 182 2 6 1370 211 354 15 0 chr3 103017262 103017327 -56582456 + BC1_Mm scRNA scRNA 19 84 -68 6 1370 1217 207 130 95 chr3 103017372 103017893 -56581890 - RMER4B LTR ERVK 0 611 1 7 1370 1539 223 151 27 chr3 103018583 103018993 -56580790 - RMER20A LTR ERVK -55 461 1 7 1370 213 94 0 0 chr3 103019247 103019279 -56580504 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 7 1370 866 182 0 47 chr3 103019279 103019370 -56580413 - B1_Mur4 SINE Alu -1 149 65 7 1370 2846 102 115 5 chr3 103019370 103019804 -56579979 + RLTR45 LTR ERVK 1 482 0 7 1370 866 182 0 47 chr3 103019804 103019862 -56579921 - B1_Mur4 SINE Alu -86 64 7 7 1370 1209 68 0 0 chr3 103020173 103020321 -56579462 + B1_Mus1 SINE Alu 1 148 0 7 1370 1166 62 7 0 chr3 103020436 103020582 -56579201 + B1_Mus1 SINE Alu 2 148 0 7 1370 837 274 98 45 chr3 103021045 103021365 -56578418 + L1_Rod LINE L1 1242 1569 -4278 7 1370 232 27 54 0 chr3 103021365 103021402 -56578381 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 7 1370 1149 66 0 0 chr3 103021402 103021539 -56578244 - B1_Mus1 SINE Alu -10 138 2 7 1370 837 273 95 42 chr3 103021539 103021856 -56577927 + L1_Rod LINE L1 1570 1921 -3926 7 1370 312 301 50 50 chr3 103021882 103021900 -56577883 - B1F2 SINE Alu -7 142 125 8 1370 227 29 0 54 chr3 103021900 103021937 -56577846 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 8 1370 1121 65 0 0 chr3 103021937 103022075 -56577708 - B1_Mus1 SINE Alu -10 138 1 8 1370 312 301 50 50 chr3 103022075 103022195 -56577588 - B1F2 SINE Alu -25 124 4 8 1370 768 294 10 0 chr3 103022264 103022458 -56577325 - B3A SINE B2 -2 196 1 8 1370 302 238 25 0 chr3 103022465 103022545 -56577238 - B4 SINE B4 -210 82 1 8 1371 2092 153 54 34 chr3 103023047 103023552 -56576231 - RLTR31B_Mm LTR ERVK 0 584 3 8 1371 297 254 0 0 chr3 103024018 103024089 -56575694 + MER57-int LTR ERV1 7149 7219 -318 8 1371 2041 140 9 104 chr3 103024259 103024667 -56575116 + ORR1B1 LTR MaLR 28 392 -2 8 1371 1203 61 0 0 chr3 103024868 103025016 -56574767 + B1_Mus1 SINE Alu 1 148 0 8 1371 228 67 0 0 chr3 103025058 103025088 -56574695 + (GAAA)n Simple_repeat Simple_repeat 3 32 0 8 1371 349 354 18 0 chr3 103025118 103025231 -56574552 - ID_B1 SINE B4 -1 223 109 9 1371 268 282 28 0 chr3 103025330 103025401 -56574382 - MER77 LTR ERVL -233 374 302 9 1371 871 205 27 77 chr3 103025415 103025637 -56574146 - B3 SINE B2 -1 215 5 9 1371 367 19 19 19 chr3 103025702 103025755 -56574028 + (TG)n Simple_repeat Simple_repeat 1 53 0 9 1371 3016 63 50 0 chr3 103025767 103026148 -56573635 + MTB LTR MaLR 1 400 0 9 1371 299 273 292 20 chr3 103026204 103026406 -56573377 - B4A SINE B4 -35 257 1 9 1371 254 383 38 23 chr3 103026591 103026722 -56573061 + RSINE1 SINE B4 1 133 -32 9 1371 348 307 43 17 chr3 103027289 103027405 -56572378 - B4 SINE B4 -169 123 5 9 1371 429 81 0 0 chr3 103027440 103027502 -56572281 + (TG)n Simple_repeat Simple_repeat 2 63 0 9 1371 248 200 15 0 chr3 103027693 103027758 -56572025 + CT-rich Low_complexity Low_complexity 3 68 0 9 1371 857 186 57 24 chr3 103027771 103027980 -56571803 - B3 SINE B2 0 216 1 1 1371 537 245 7 80 chr3 103027993 103028144 -56571639 - B1_Mur1 SINE Alu -8 141 2 1 1371 200 86 0 28 chr3 103028736 103028772 -56571011 + (CCCCCT)n Simple_repeat Simple_repeat 4 38 0 1 1371 2470 191 110 42 chr3 103029004 103029577 -56570206 + RLTR18 LTR ERVK 5 616 0 1 1371 247 146 0 35 chr3 103029766 103029823 -56569960 + (TA)n Simple_repeat Simple_repeat 1 55 0 1 1371 3278 29 0 8 chr3 103030017 103030403 -56569380 + L1Md_F3 LINE L1 6202 6584 0 1 1371 353 244 203 41 chr3 103030408 103030566 -56569217 - B3A SINE B2 -12 204 28 1 1371 383 0 21 0 chr3 103030764 103030811 -56568972 + (TCTA)n Simple_repeat Simple_repeat 4 51 0 1 1371 555 194 0 46 chr3 103030827 103030935 -56568848 - B1_Mur4 SINE Alu -19 131 29 1 1371 294 237 41 51 chr3 103030935 103031033 -56568750 + RLTR14-int LTR ERV1 467 563 -4754 1 1371 3865 121 274 102 chr3 103031238 103031401 -56568382 + RLTR25A LTR ERVK 1 253 -850 1 1371 1231 48 0 0 chr3 103031401 103031546 -56568237 + B1_Mus2 SINE Alu 3 147 0 1 1371 3865 124 186 23 chr3 103031546 103032259 -56567524 + RLTR25A LTR ERVK 254 1103 0 1 1371 354 312 18 60 chr3 103032260 103032427 -56567356 + RLTR14-int LTR ERV1 750 909 -4408 1 1371 3148 91 24 49 chr3 103032498 103032992 -56566791 + RLTR45 LTR ERVK 1 482 0 1 1371 592 297 15 71 chr3 103033392 103033660 -56566123 + RLTR14-int LTR ERV1 5065 5317 0 1 1371 1037 214 238 36 chr3 103033712 103034158 -56565625 + RMER6C LTR ERVK 1 536 -154 1 1371 1088 124 0 0 chr3 103034575 103034736 -56565047 + RMER6C LTR ERVK 530 690 0 1 1371 407 259 133 42 chr3 103034946 103035111 -56564672 + RLTR14 LTR ERV1 203 382 0 1 1371 324 286 0 0 chr3 103035111 103035181 -56564602 - B3A SINE B2 -127 71 2 1 1371 425 310 17 0 chr3 103035206 103035322 -56564461 + RSINE1 SINE B4 34 151 -14 1 1371 28 0 0 0 chr3 103035633 103035661 -56564122 + AT_rich Low_complexity Low_complexity 1 28 0 1 1371 1225 89 72 0 chr3 103035748 103035928 -56563855 - B2_Mm1a SINE B2 0 193 1 1 1371 490 267 66 33 chr3 103035939 103036121 -56563662 - B3A SINE B2 -10 188 1 1 1371 839 188 20 22 chr3 103036441 103036642 -56563141 - B2_Mm2 SINE B2 0 216 2 1 1371 553 279 163 0 chr3 103036642 103036814 -56562969 - B3 SINE B2 -16 200 1 1 1371 719 211 194 0 chr3 103037162 103037342 -56562441 + B3 SINE B2 1 215 -1 1 1371 699 220 106 0 chr3 103037402 103037543 -56562240 + B3A SINE B2 1 156 -42 1 1371 450 0 0 0 chr3 103037553 103037603 -56562180 + (CA)n Simple_repeat Simple_repeat 1 50 0 1 1371 621 176 0 18 chr3 103038059 103038169 -56561614 - B1_Mus1 SINE Alu -23 125 18 1 1371 189 0 0 0 chr3 103038212 103038233 -56561550 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 1 1371 1170 75 0 0 chr3 103038314 103038461 -56561322 + B1_Mm SINE Alu 1 147 0 1 1371 324 0 0 0 chr3 103038674 103038710 -56561073 + (TG)n Simple_repeat Simple_repeat 1 36 0 1 1371 559 254 207 21 chr3 103038714 103038951 -56560832 - RMER20B LTR ERVK -235 392 112 1 1371 24 0 0 0 chr3 103039119 103039143 -56560640 + AT_rich Low_complexity Low_complexity 1 24 0 1 1371 1320 89 10 16 chr3 103039157 103039350 -56560433 - B2_Mm1t SINE B2 0 193 2 1 1371 238 250 271 8 chr3 103039437 103039570 -56560213 - L1_Mur3 LINE L1 -3449 2431 2264 1 1371 880 299 109 25 chr3 103039621 103039978 -56559805 + MTD LTR MaLR 18 404 -15 1 1371 709 261 65 121 chr3 103039982 103040077 -56559706 + MTD-int LTR MaLR 3 69 -1511 1 1371 893 119 7 27 chr3 103040077 103040224 -56559559 - B1_Mm SINE Alu -2 145 2 1 1371 868 252 152 88 chr3 103040224 103040961 -56558822 + MTD-int LTR MaLR 51 950 -308 1 1371 28 48 0 0 chr3 103040962 103041004 -56558779 + AT_rich Low_complexity Low_complexity 1 42 0 1 1371 211 91 30 0 chr3 103041004 103041037 -56558746 - B2_Mm2 SINE B2 -115 80 47 1 1371 1348 80 11 0 chr3 103041089 103041264 -56558519 - B2_Mm1t SINE B2 -15 178 2 1 1371 3546 25 0 0 chr3 103041672 103042068 -56557715 - MTA_Mm LTR MaLR 0 396 1 1 1371 2719 41 77 0 chr3 103042476 103042815 -56556968 + RLTR10B2 LTR ERVK 1 365 0 1 1371 2333 131 71 47 chr3 103042905 103043369 -56556414 - IAPLTR2_Mm LTR ERVK 0 475 1 1 1371 2050 174 17 62 chr3 103043403 103043807 -56555976 + ORR1B1 LTR MaLR 1 386 -8 1 1371 1968 41 32 0 chr3 103043971 103044217 -56555566 - L1Md_F3 LINE L1 0 6584 6331 1 1371 1966 25 4 4 chr3 103044217 103044454 -56555329 + L1Md_F3 LINE L1 5861 6097 -487 1 1371 1799 120 7 213 chr3 103044496 103044799 -56554984 + ORR1A4 LTR MaLR 1 286 -43 1 1371 1287 27 0 0 chr3 103044799 103044946 -56554837 + B1_Mm SINE Alu 1 147 0 1 1371 1799 120 7 213 chr3 103044946 103045056 -56554727 + ORR1A4 LTR MaLR 287 329 0 1 1371 327 306 104 11 chr3 103045058 103045170 -56554613 + PB1 SINE Alu 4 121 -28 1 1371 824 129 32 0 chr3 103045300 103045424 -56554359 + B1_Mus2 SINE Alu 9 136 -11 1 1371 288 0 0 0 chr3 103045427 103045459 -56554324 + (TA)n Simple_repeat Simple_repeat 2 33 0 1 1371 468 250 37 0 chr3 103045662 103045798 -56553985 + RMER15 LTR ERVL 422 562 -13 1 1371 825 242 21 21 chr3 103046230 103046420 -56553363 - B3A SINE B2 -4 194 5 1 1371 246 128 0 0 chr3 103046424 103046463 -56553320 + (TTAA)n Simple_repeat Simple_repeat 1 39 0 1 1371 645 173 39 0 chr3 103046465 103046569 -56553214 - B1_Mur2 SINE Alu -41 108 1 1 1371 433 134 194 10 chr3 103046574 103046672 -56553111 - PB1D9 SINE Alu -3 117 2 1 1371 2670 166 62 6 chr3 103046726 103047229 -56552554 - MT2A LTR ERVL 0 533 3 1 1371 589 302 31 53 chr3 103047584 103047795 -56551988 - ID_B1 SINE B4 -1 223 13 1 1371 4181 62 36 18 chr3 103047795 103048352 -56551431 + RMER2 LTR ERV1 1 567 0 1 1371 589 302 31 53 chr3 103048352 103048367 -56551416 - ID SINE ID -212 12 2 1 1371 336 296 0 22 chr3 103048403 103048493 -56551290 + PB1D10 SINE Alu 28 115 -2 1 1371 963 158 0 14 chr3 103048553 103048701 -56551082 - B1_Mur3 SINE Alu -1 148 3 1 1371 897 170 0 20 chr3 103048850 103049000 -56550783 + B1_Mur1 SINE Alu 1 147 -2 1 1371 928 166 78 58 chr3 103049007 103049212 -56550571 + B3 SINE B2 1 209 -7 1 1371 733 213 96 20 chr3 103049549 103049851 -56549932 - RMER17C LTR ERVK -2 408 84 1 1371 266 155 0 33 chr3 103049861 103049921 -56549862 + G-rich Low_complexity Low_complexity 3 60 0 1 1371 1209 55 0 0 chr3 103049941 103050086 -56549697 + B1_Mus2 SINE Alu 3 147 0 1 1371 198 0 0 0 chr3 103050825 103050847 -56548936 + (T)n Simple_repeat Simple_repeat 1 22 0 1 1371 965 99 0 44 chr3 103051470 103051607 -56548176 - B1_Mus1 SINE Alu -13 135 5 1 1371 839 268 42 15 chr3 103051670 103051935 -56547848 + ORR1D2 LTR MaLR 1 272 -98 1 1371 332 204 0 0 chr3 103051953 103052007 -56547776 + B1_Mus2 SINE Alu 85 138 -9 1 1371 1578 17 0 0 chr3 103052231 103052403 -56547380 - B2_Mm1a SINE B2 -18 175 4 1 1371 544 294 102 7 chr3 103052435 103052582 -56547201 - RSINE1 SINE B4 0 165 5 1 1371 213 175 0 0 chr3 103052617 103052657 -56547126 + (CATA)n Simple_repeat Simple_repeat 4 43 0 1 1371 1597 198 105 16 chr3 103052744 103053171 -56546612 + RMER15 LTR ERVL 27 557 -18 1 1371 1246 66 60 0 chr3 103053279 103053445 -56546338 + B2_Mm1t SINE B2 2 177 -16 1 1371 354 45 0 0 chr3 103053445 103053489 -56546294 + (GAAA)n Simple_repeat Simple_repeat 1 44 0 1 1371 323 362 23 8 chr3 103053524 103053652 -56546131 + RSINE1 SINE B4 34 163 -2 1 1371 1263 107 34 216 chr3 103053724 103053753 -56546030 - RMER17C LTR ERVK 0 410 384 1 1371 481 99 0 62 chr3 103053753 103053850 -56545933 + L1_Mus3 LINE L1 6548 6638 0 1 1371 1263 107 34 216 chr3 103053850 103054237 -56545546 - RMER17C LTR ERVK -27 383 70 1 1371 336 116 314 51 chr3 103054243 103054361 -56545422 - B2_Mm2 SINE B2 0 195 47 1 1371 1160 125 22 17 chr3 103054437 103054616 -56545167 - B2_Mm2 SINE B2 -14 181 2 1 1371 430 110 123 0 chr3 103054616 103054689 -56545094 - RMER17C LTR ERVK -328 82 1 1 1371 501 299 54 0 chr3 103054872 103055019 -56544764 + ID_B1 SINE B4 70 224 0 1 1371 301 231 15 15 chr3 103055049 103055115 -56544668 + ID4_ SINE ID 2 67 -16 1 1371 471 78 0 0 chr3 103055126 103055190 -56544593 + (TCTA)n Simple_repeat Simple_repeat 3 66 0 1 1371 279 308 0 13 chr3 103055541 103055620 -56544163 - ID4 SINE ID -2 81 4 1 1371 881 138 27 14 chr3 103055634 103055781 -56544002 - B1_Mur4 SINE Alu 0 150 2 1 1371 29 28 0 0 chr3 103055792 103055828 -56543955 + AT_rich Low_complexity Low_complexity 1 36 0 1 1371 282 216 0 0 chr3 103055969 103056020 -56543763 + B1_Mur4 SINE Alu 5 55 -95 1 1371 1044 56 0 117 chr3 103056020 103056172 -56543611 + B1_Mus2 SINE Alu 1 134 -13 1 1371 234 0 0 0 chr3 103056172 103056198 -56543585 + (CAAA)n Simple_repeat Simple_repeat 4 29 0 1 1371 260 282 31 17 chr3 103057189 103057221 -56542562 - PB1D10 SINE Alu -25 95 1 1 1371 271 257 29 0 chr3 103057221 103057291 -56542492 - ID_B1 SINE B4 -71 153 82 1 1371 191 61 0 29 chr3 103057375 103057409 -56542374 + (TTTTG)n Simple_repeat Simple_repeat 3 35 0 1 1371 1302 35 7 0 chr3 103057410 103057555 -56542228 - B1_Mus2 SINE Alu -1 146 1 1 1371 250 192 75 88 chr3 103057666 103057746 -56542037 + RLTR25A LTR ERVK 504 582 -521 1 1371 759 21 11 0 chr3 103057695 103057789 -56541994 + B1_Mus2 SINE Alu 53 147 0 1 1371 483 58 0 0 chr3 103057950 103057986 -56541797 + (A)n Simple_repeat Simple_repeat 1 36 0 1 1371 1298 48 0 7 chr3 103057986 103058134 -56541649 + B1_Mus2 SINE Alu 1 147 0 1 1371 483 58 0 0 chr3 103058134 103058166 -56541617 + (A)n Simple_repeat Simple_repeat 1 32 0 1 1371 361 239 62 42 chr3 103058202 103058298 -56541485 + RSINE1 SINE B4 54 151 -14 1 1371 289 181 230 60 chr3 103058333 103058349 -56541434 + PB1 SINE Alu 4 120 -7 1 1371 382 191 202 0 chr3 103058349 103058433 -56541350 + ID_B1 SINE B4 116 216 -8 1 1371 210 71 0 0 chr3 103058433 103058461 -56541322 + (CAAT)n Simple_repeat Simple_repeat 2 29 0 1 1371 332 256 26 0 chr3 103058717 103058795 -56540988 - B1F SINE Alu -45 104 25 2 1371 1319 101 78 0 chr3 103058834 103059013 -56540770 + B2_Mm2 SINE B2 1 193 -2 2 1371 725 213 41 28 chr3 103059132 103059277 -56540506 + RSINE1 SINE B4 15 161 -4 2 1371 1212 71 6 23 chr3 103059703 103059876 -56539907 + B2_Mm2 SINE B2 3 172 -23 2 1371 729 240 67 10 chr3 103060111 103060305 -56539478 - MER77 LTR ERVL -364 243 39 2 1371 894 139 177 26 chr3 103060516 103060696 -56539087 - URR1A DNA MER1_type 0 226 18 2 1371 280 287 76 38 chr3 103060696 103060801 -56538982 + B1F SINE Alu 4 112 -37 2 1371 717 118 0 0 chr3 103060807 103060917 -56538866 + (TATATG)n Simple_repeat Simple_repeat 3 112 0 2 1371 415 304 22 0 chr3 103060917 103061052 -56538731 + (CATA)n Simple_repeat Simple_repeat 1 138 0 2 1371 234 150 0 0 chr3 103061058 103061098 -56538685 + (TATATG)n Simple_repeat Simple_repeat 2 41 0 2 1371 811 83 176 88 chr3 103061100 103061259 -56538524 - B2_Mm2 SINE B2 -17 178 6 2 1371 1145 52 0 7 chr3 103061294 103061430 -56538353 + B1_Mus1 SINE Alu 3 137 -11 2 1371 423 0 0 0 chr3 103061430 103061477 -56538306 + (CAAAA)n Simple_repeat Simple_repeat 3 49 0 2 1371 521 215 23 62 chr3 103061807 103061936 -56537847 - B3A SINE B2 -73 125 2 2 1371 225 0 0 0 chr3 103062081 103062106 -56537677 + (A)n Simple_repeat Simple_repeat 1 25 0 2 1371 735 147 69 0 chr3 103062117 103062233 -56537550 + B1_Mur3 SINE Alu 6 129 -20 2 1371 486 0 0 0 chr3 103062252 103062306 -56537477 + (GA)n Simple_repeat Simple_repeat 1 54 0 2 1371 222 37 0 0 chr3 103062327 103062354 -56537429 + (CA)n Simple_repeat Simple_repeat 2 28 0 2 1371 489 268 52 35 chr3 103062355 103062529 -56537254 + L1M2 LINE L1 2656 2832 -3311 2 1371 623 213 78 35 chr3 103062598 103062739 -56537044 - B3A SINE B2 -50 148 2 2 1371 234 0 0 0 chr3 103062747 103062773 -56537010 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 2 1371 573 169 193 8 chr3 103062773 103062892 -56536891 - B1_Mur1 SINE Alu -3 146 6 2 1371 728 110 246 0 chr3 103062906 103063024 -56536759 - B1_Mm SINE Alu 0 147 1 2 1371 253 304 69 9 chr3 103063028 103063144 -56536639 + L1_Rod LINE L1 2898 3020 -2827 2 1371 798 215 63 63 chr3 103063152 103063193 -56536590 + B3 SINE B2 1 38 -178 2 1371 1121 44 0 7 chr3 103063193 103063329 -56536454 + B1_Mus1 SINE Alu 1 135 -13 2 1371 288 0 0 0 chr3 103063329 103063361 -56536422 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 2 1371 798 215 63 63 chr3 103063361 103063507 -56536276 + B3 SINE B2 39 188 -28 2 1371 331 176 63 105 chr3 103063536 103063560 -56536223 + B1_Mur3 SINE Alu 2 22 -127 2 1371 1926 170 251 7 chr3 103063560 103064022 -56535761 - RMER15 LTR ERVL 0 575 1 2 1371 344 183 53 97 chr3 103064022 103064105 -56535678 + PB1D9 SINE Alu 23 99 -21 2 1371 278 280 33 108 chr3 103064127 103064148 -56535635 + RSINE1 SINE B4 6 25 -140 2 1371 1202 222 77 27 chr3 103064148 103064514 -56535269 - ORR1C2 LTR MaLR 0 384 1 2 1371 278 280 33 108 chr3 103064514 103064612 -56535171 + RSINE1 SINE B4 26 116 -49 2 1371 360 0 0 0 chr3 103064624 103064664 -56535119 + (CA)n Simple_repeat Simple_repeat 2 41 0 2 1371 215 225 0 0 chr3 103064664 103064704 -56535079 + GA-rich Low_complexity Low_complexity 2 41 0 2 1371 364 254 101 8 chr3 103064827 103064946 -56534837 - MTE2b LTR MaLR -2 377 248 2 1371 357 246 50 129 chr3 103064953 103065035 -56534748 - RMER10B LTR ERVL 0 398 312 2 1371 1141 88 0 0 chr3 103065035 103065172 -56534611 + B1_Mm SINE Alu 1 137 -10 2 1371 444 19 0 0 chr3 103065172 103065225 -56534558 + (CAAAA)n Simple_repeat Simple_repeat 2 54 0 2 1371 357 246 50 129 chr3 103065234 103065291 -56534492 - RMER10B LTR ERVL -87 311 270 2 1371 388 336 83 43 chr3 103065392 103065694 -56534089 - MTC LTR MaLR -107 314 1 2 1371 2192 108 13 3 chr3 103065699 103066014 -56533769 - ORR1A2 LTR MaLR -8 319 2 2 1371 2000 163 26 9 chr3 103066069 103066410 -56533373 + ORR1B1 LTR MaLR 48 394 0 2 1371 407 226 471 63 chr3 103066573 103066811 -56532972 + RMER20B LTR ERVK 234 568 -59 2 1371 2734 179 13 45 chr3 103066824 103067387 -56532396 + RMER19C LTR ERVK 2 611 0 2 1371 418 309 114 0 chr3 103067515 103067638 -56532145 + B1F2 SINE Alu 3 139 -10 2 1371 281 245 144 93 chr3 103067647 103067847 -56531936 + L1M2 LINE L1 3011 3224 -2919 2 1371 243 0 0 0 chr3 103067847 103067874 -56531909 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 2 1371 281 245 144 93 chr3 103067874 103067943 -56531840 + L1M2 LINE L1 3225 3293 -2850 2 1371 795 231 0 49 chr3 103067952 103068116 -56531667 + RSINE1 SINE B4 2 157 -8 2 1371 607 289 8 0 chr3 103068157 103068285 -56531498 + B1_Mur1 SINE Alu 1 129 -20 2 1371 965 149 24 130 chr3 103068474 103068605 -56531178 - URR1A DNA MER1_type -5 221 115 2 1371 981 162 7 0 chr3 103068605 103068753 -56531030 - B1_Mur4 SINE Alu 0 150 2 2 1371 965 149 24 130 chr3 103068753 103068868 -56530915 - URR1A DNA MER1_type -112 114 1 2 1371 440 249 106 45 chr3 103068870 103069068 -56530715 + L1M2 LINE L1 3451 3660 -2483 2 1371 989 219 120 36 chr3 103069068 103069343 -56530440 - RMER20B LTR ERVK -22 605 308 2 1371 1692 52 0 0 chr3 103069344 103069536 -56530247 - B2_Mm1a SINE B2 0 193 2 2 1371 939 104 0 0 chr3 103069544 103069669 -56530114 - B1_Mus1 SINE Alu -21 127 3 2 1371 272 249 71 42 chr3 103069669 103069731 -56530052 - ORR1B1-int LTR MaLR -861 648 582 2 1371 351 347 95 0 chr3 103069787 103069882 -56529901 + RSINE1 SINE B4 58 161 -4 2 1371 2000 286 45 56 chr3 103069964 103070022 -56529761 + L1M2 LINE L1 4183 4246 -1897 2 1371 2551 121 147 2 chr3 103070022 103070443 -56529340 + RLTR45 LTR ERVK 1 482 0 2 1371 2000 286 45 56 chr3 103070443 103071157 -56528626 + L1M2 LINE L1 4247 4951 -1192 2 1371 531 158 544 7 chr3 103071157 103071304 -56528479 + URR1A DNA MER1_type 1 226 0 2 1371 2000 286 45 56 chr3 103071304 103071577 -56528206 + L1M2 LINE L1 4952 5217 -926 2 1371 349 263 21 0 chr3 103071673 103071768 -56528015 + B4A SINE B4 1 97 -195 2 1371 321 214 0 0 chr3 103071782 103071838 -56527945 + ID4_ SINE ID 14 69 -14 2 1371 392 0 21 0 chr3 103071857 103071905 -56527878 + (CA)n Simple_repeat Simple_repeat 2 50 0 2 1371 180 163 0 0 chr3 103071914 103071957 -56527826 + (CAGA)n Simple_repeat Simple_repeat 2 44 0 2 1371 1170 236 35 59 chr3 103071957 103072295 -56527488 - ORR1D1 LTR MaLR -42 332 3 2 1371 988 266 42 59 chr3 103072352 103072701 -56527082 + RMER19C LTR ERVK 1 430 -181 2 1371 8425 98 17 10 chr3 103072701 103073923 -56525860 - MurERV4_19-int LTR ERVK -1582 4198 2968 2 1371 1005 136 7 0 chr3 103073911 103074065 -56525718 - MurERV4_19-int LTR ERVK -787 4993 4839 2 1371 1319 67 11 0 chr3 103074128 103074308 -56525475 + B2_Mm1t SINE B2 11 192 -1 2 1371 1551 97 4 81 chr3 103074308 103074355 -56525428 - MurERV4_19-int LTR ERVK -954 4826 4791 2 1371 267 54 0 0 chr3 103074355 103074392 -56525391 + (TTTG)n Simple_repeat Simple_repeat 1 37 0 2 1371 1113 109 7 0 chr3 103074400 103074547 -56525236 - B1_Mus1 SINE Alu 0 148 1 2 1371 1551 97 4 81 chr3 103074547 103074749 -56525034 - MurERV4_19-int LTR ERVK -990 4790 4588 2 1371 360 0 0 0 chr3 103074814 103074854 -56524929 + (TA)n Simple_repeat Simple_repeat 1 40 0 2 1371 894 182 21 7 chr3 103074923 103075067 -56524716 - B1_Mur3 SINE Alu -2 147 2 2 1371 737 308 0 20 chr3 103075203 103075405 -56524378 + B3A SINE B2 1 198 0 2 1371 246 319 42 0 chr3 103075455 103075527 -56524256 - PB1D10 SINE Alu -20 97 23 2 1371 426 301 50 39 chr3 103076177 103076357 -56523426 - MamGypLTR3 LTR Gypsy -1 838 657 2 1371 888 82 0 0 chr3 103076609 103076731 -56523052 + (TTTTC)n Simple_repeat Simple_repeat 5 126 0 2 1371 1838 136 80 10 chr3 103076838 103077151 -56522632 - RMER20A LTR ERVK -181 335 1 2 1371 1139 129 67 6 chr3 103077244 103077423 -56522360 + B2_Mm1t SINE B2 2 191 -2 2 1371 303 310 75 34 chr3 103077773 103077920 -56521863 - MER58D DNA MER1_type -218 168 16 2 1371 1595 64 5 0 chr3 103077924 103078112 -56521671 - B2_Mm1t SINE B2 -3 190 2 2 1371 538 266 23 8 chr3 103078122 103078251 -56521532 - ID_B1 SINE B4 -7 217 87 2 1371 924 136 43 0 chr3 103078326 103078466 -56521317 + B1_Mus1 SINE Alu 3 148 0 2 1371 581 254 54 0 chr3 103078469 103078599 -56521184 + Lx5 LINE L1 6227 6363 -687 2 1371 1085 258 55 63 chr3 103078601 103078981 -56520802 + Lx5 LINE L1 6484 6860 -190 2 1371 1248 41 14 0 chr3 103079011 103079156 -56520627 - B1_Mus2 SINE Alu 0 147 1 2 1371 838 114 15 0 chr3 103079163 103079294 -56520489 - RMER6D LTR ERVK -381 339 207 2 1371 533 15 0 15 chr3 103079311 103079378 -56520405 + (TCTA)n Simple_repeat Simple_repeat 4 69 0 2 1371 1088 108 6 19 chr3 103079378 103079539 -56520244 - B2_Mm2 SINE B2 -35 160 2 2 1371 922 115 301 0 chr3 103079539 103079708 -56520075 - RMER6D LTR ERVK -494 226 3 2 1371 758 292 83 14 chr3 103079820 103080179 -56519604 + MER77 LTR ERVL 1 475 -132 2 1371 298 295 13 13 chr3 103080207 103080286 -56519497 + MER77 LTR ERVL 529 607 0 2 1371 693 261 32 118 chr3 103080646 103081181 -56518602 - L1_Mur3 LINE L1 -772 5528 5035 2 1371 260 291 175 0 chr3 103081204 103081393 -56518390 + L1M5 LINE L1 5577 5798 -326 2 1371 1202 63 14 0 chr3 103081454 103081597 -56518186 + B1_Mus2 SINE Alu 2 146 -1 2 1371 186 43 0 0 chr3 103081614 103081637 -56518146 + (CAA)n Simple_repeat Simple_repeat 2 24 0 2 1371 383 179 188 10 chr3 103081860 103081956 -56517827 - ORR1C1 LTR MaLR -250 128 16 2 1371 1221 68 0 0 chr3 103081972 103082118 -56517665 - B1_Mus2 SINE Alu 0 147 2 2 1371 204 238 57 5 chr3 103082390 103082457 -56517326 + L2c LINE L2 3246 3318 -69 2 1371 239 176 0 123 chr3 103082633 103082702 -56517081 - B1F SINE Alu -6 143 51 2 1371 23 68 0 0 chr3 103083610 103083654 -56516129 + GC_rich Low_complexity Low_complexity 1 44 0 2 1371 225 108 0 0 chr3 103083661 103083698 -56516085 + (CTCG)n Simple_repeat Simple_repeat 2 38 0 2 1371 237 185 0 58 chr3 103083699 103083785 -56515998 + (CGG)n Simple_repeat Simple_repeat 1 81 0 2 1371 303 203 0 0 chr3 103084089 103084163 -56515620 + (CCCCAG)n Simple_repeat Simple_repeat 3 76 0 2 1371 1764 31 0 0 chr3 103085450 103085641 -56514142 - B2_Mm1a SINE B2 -1 192 2 2 1371 328 293 29 39 chr3 103085769 103085872 -56513911 - ID_B1 SINE B4 -63 161 60 2 1371 227 189 191 36 chr3 103086218 103086328 -56513455 + MIR SINE MIR 124 250 -12 2 1371 673 233 20 14 chr3 103086547 103086695 -56513088 - B1_Mur4 SINE Alu 0 150 2 3 1371 1247 48 0 20 chr3 103087090 103087240 -56512543 - B1_Mus2 SINE Alu 0 147 1 3 1371 1404 88 11 0 chr3 103087260 103087442 -56512341 - B2_Mm1t SINE B2 -9 184 1 3 1371 478 150 12 0 chr3 103087735 103087815 -56511968 - URR1B DNA MER1_type 0 225 145 3 1371 684 168 9 26 chr3 103087839 103087955 -56511828 - B3 SINE B2 -102 114 1 3 1371 251 152 76 0 chr3 103087957 103088023 -56511760 - URR1B DNA MER1_type -72 153 83 3 1371 22 0 0 0 chr3 103088238 103088260 -56511523 + AT_rich Low_complexity Low_complexity 1 22 0 3 1371 896 221 35 40 chr3 103088260 103088458 -56511325 - B3A SINE B2 0 198 2 3 1371 308 262 48 0 chr3 103088474 103088558 -56511225 - ID_B1 SINE B4 0 224 137 3 1371 361 278 0 94 chr3 103088564 103088691 -56511092 - PB1 SINE Alu -12 115 1 3 1371 982 250 41 66 chr3 103088911 103089305 -56510478 + Charlie1a DNA MER1_type 442 825 -630 3 1371 890 61 0 0 chr3 103089508 103089623 -56510160 - B1_Mur4 SINE Alu 0 150 36 3 1371 317 259 17 61 chr3 103089543 103089658 -56510125 - MT2B LTR ERVL -337 264 155 3 1371 315 320 70 0 chr3 103089699 103089799 -56509984 + PB1 SINE Alu 6 112 -15 3 1371 447 68 0 0 chr3 103089834 103089893 -56509890 + (TG)n Simple_repeat Simple_repeat 2 60 0 3 1371 227 366 73 15 chr3 103090044 103090120 -56509663 - B4A SINE B4 0 292 216 3 1371 1256 84 9 140 chr3 103090120 103090342 -56509441 - B2_Mm2 SINE B2 -2 193 1 3 1371 227 366 73 15 chr3 103090342 103090401 -56509382 - B4A SINE B4 -77 215 149 3 1371 574 274 50 134 chr3 103090439 103090459 -56509324 - B4 SINE B4 -53 239 217 3 1371 243 0 0 0 chr3 103090459 103090486 -56509297 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 3 1371 574 274 50 134 chr3 103090486 103090726 -56509057 - B4 SINE B4 -76 216 2 3 1371 21 0 0 0 chr3 103090757 103090778 -56509005 + AT_rich Low_complexity Low_complexity 1 21 0 3 1371 3629 63 60 11 chr3 103091247 103091713 -56508070 - L1_Mus1 LINE L1 0 6567 6079 3 1371 1975 67 20 0 chr3 103091713 103091967 -56507816 + L1_Mus1 LINE L1 5778 6036 -531 3 1371 234 255 16 66 chr3 103092056 103092123 -56507660 - ID2 SINE ID -19 64 1 3 1371 413 195 12 0 chr3 103092413 103092495 -56507288 - ORR1E LTR MaLR -276 83 1 3 1371 239 224 0 20 chr3 103092571 103092621 -56507162 + G-rich Low_complexity Low_complexity 4 52 0 3 1371 224 232 0 0 chr3 103092654 103092710 -56507073 + A-rich Low_complexity Low_complexity 1 56 0 3 1371 343 324 42 21 chr3 103092715 103092857 -56506926 + B1F SINE Alu 1 145 -4 3 1371 363 333 212 4 chr3 103092863 103093113 -56506670 - MLT1F LTR MaLR -116 432 131 3 1371 368 252 50 16 chr3 103093108 103093229 -56506554 + Cheshire DNA MER1_type 666 790 -1630 3 1371 355 229 207 26 chr3 103093228 103093421 -56506362 + Cheshire DNA MER1_type 2169 2396 -24 3 1371 377 111 0 31 chr3 103094161 103094226 -56505557 - B1_Mus2 SINE Alu 0 147 85 3 1371 251 217 0 77 chr3 103094449 103094514 -56505269 + PB1D10 SINE Alu 57 116 -1 3 1371 243 0 0 0 chr3 103094587 103094614 -56505169 + (TTCA)n Simple_repeat Simple_repeat 3 29 0 3 1371 589 231 31 0 chr3 103094794 103094924 -56504859 - B3 SINE B2 -82 134 1 3 1371 480 301 106 58 chr3 103095042 103095317 -56504466 - B4A SINE B4 0 292 5 3 1371 1943 138 70 0 chr3 103095579 103095920 -56503863 + RMER6B LTR ERVK 83 447 -14 3 1371 1722 159 24 20 chr3 103095924 103096219 -56503564 + MYSERV6-int LTR ERVK 2 297 -8662 3 1371 1026 109 131 6 chr3 103096223 103096398 -56503385 + MYSERV6-int LTR ERVK 977 1173 -7786 3 1371 1539 43 43 5 chr3 103096399 103096585 -56503198 + B2_Mm1a SINE B2 1 193 0 3 1371 1045 130 59 49 chr3 103096642 103096845 -56502938 + MYSERV6-int LTR ERVK 1160 1364 -7595 3 1371 9520 102 43 14 chr3 103096827 103098269 -56501514 + MYSERV6-int LTR ERVK 1561 3044 -5915 3 1371 7738 90 36 20 chr3 103098267 103099432 -56500351 + MYSERV6-int LTR ERVK 3845 5028 -3931 3 1371 6801 97 81 53 chr3 103099444 103100586 -56499197 + MYSERV6-int LTR ERVK 4937 6109 -2850 3 1371 217 252 231 46 chr3 103100703 103100725 -56499058 - B4A SINE B4 -151 141 14 3 1371 456 198 58 0 chr3 103100725 103100811 -56498972 - B3 SINE B2 -112 104 14 3 1371 234 252 46 18 chr3 103100834 103100943 -56498840 - L1M4b LINE L1 -3739 3595 3484 3 1371 368 226 23 11 chr3 103101008 103101138 -56498645 - L1M4b LINE L1 -3853 3481 3412 3 1371 729 45 45 0 chr3 103101172 103101261 -56498522 + MYSERV6-int LTR ERVK 5058 5150 -3809 3 1371 340 165 46 110 chr3 103101261 103101336 -56498447 - ID_B1 SINE B4 0 224 157 3 1371 1761 16 0 20 chr3 103101336 103101531 -56498252 - B2_Mm1t SINE B2 -2 191 1 3 1371 340 165 46 110 chr3 103101531 103101564 -56498219 - ID_B1 SINE B4 -68 156 123 3 1371 1359 54 5 26 chr3 103101569 103101760 -56498023 - B2_Mm1t SINE B2 0 193 7 3 1371 375 316 29 106 chr3 103101727 103101897 -56497886 - ID_B1 SINE B4 -65 159 3 3 1371 268 305 163 25 chr3 103101905 103102144 -56497639 - L1M4b LINE L1 -5993 1341 1070 3 1371 288 0 0 0 chr3 103102157 103102189 -56497594 + (TG)n Simple_repeat Simple_repeat 1 32 0 3 1371 479 252 158 66 chr3 103102310 103102521 -56497262 - L1M4b LINE L1 -6371 963 724 3 1371 180 0 0 0 chr3 103102521 103102541 -56497242 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 3 1371 969 93 108 0 chr3 103102544 103102673 -56497110 - B1_Mus1 SINE Alu -5 143 1 3 1371 479 252 158 66 chr3 103102673 103102716 -56497067 - L1M4b LINE L1 -6611 723 681 3 1371 765 49 0 0 chr3 103102757 103102859 -56496924 + (TC)n Simple_repeat Simple_repeat 1 102 0 3 1371 310 299 114 60 chr3 103102962 103103129 -56496654 - B4A SINE B4 -107 185 10 3 1371 1198 41 14 7 chr3 103103198 103103344 -56496439 - B1_Mus1 SINE Alu 0 148 2 3 1371 484 345 207 16 chr3 103103365 103103728 -56496055 - L1M4b LINE L1 -6724 610 179 3 1371 354 162 149 0 chr3 103103932 103104006 -56495777 - PB1D9 SINE Alu 0 120 36 3 1371 593 250 66 71 chr3 103104012 103104210 -56495573 - B3A SINE B2 0 198 2 3 1371 1774 26 0 0 chr3 103104220 103104410 -56495373 - B2_Mm1t SINE B2 -2 191 2 3 1371 305 257 74 65 chr3 103104512 103104620 -56495163 + PB1D10 SINE Alu 2 110 -7 3 1371 230 0 33 0 chr3 103104652 103104682 -56495101 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 3 1371 351 131 164 28 chr3 103104686 103104784 -56494999 - B2_Mm2 SINE B2 -14 181 47 3 1371 1393 90 11 0 chr3 103104850 103105028 -56494755 - B2_Mm2 SINE B2 -14 181 2 3 1371 246 207 0 79 chr3 103105078 103105141 -56494642 + B4A SINE B4 189 246 -46 3 1371 490 321 54 12 chr3 103105256 103105423 -56494360 - B3 SINE B2 -34 182 9 3 1371 1733 130 121 22 chr3 103105564 103105878 -56493905 - ORR1B1 LTR MaLR -37 357 13 3 1371 1149 238 93 18 chr3 103105884 103106270 -56493513 - L1M2 LINE L1 -509 5791 5377 3 1371 462 325 65 19 chr3 103106271 103106425 -56493358 - RSINE1 SINE B4 -2 163 3 3 1371 226 188 143 14 chr3 103106425 103106495 -56493288 - L1M2 LINE L1 -899 5398 5320 3 1371 265 353 7 14 chr3 103106879 103106956 -56492827 + polypyrimidine Low_complexity Low_complexity 62 139 0 3 1371 705 56 0 0 chr3 103106956 103107046 -56492737 + (TC)n Simple_repeat Simple_repeat 1 90 0 3 1371 265 353 7 14 chr3 103107046 103107106 -56492677 + polypyrimidine Low_complexity Low_complexity 3 61 0 3 1371 245 39 78 0 chr3 103107311 103107362 -56492421 + (TTTG)n Simple_repeat Simple_repeat 2 56 0 3 1371 1217 62 0 14 chr3 103107372 103107519 -56492264 - B1_Mus1 SINE Alu -1 147 3 3 1371 1313 107 27 5 chr3 103107527 103107556 -56492227 - B2_Mm2 SINE B2 -3 192 159 3 1371 189 0 0 0 chr3 103107556 103107577 -56492206 + (TTTA)n Simple_repeat Simple_repeat 1 21 0 3 1371 1313 107 27 5 chr3 103107577 103107735 -56492048 - B2_Mm2 SINE B2 -37 158 2 3 1371 1091 216 14 32 chr3 103108151 103108371 -56491412 - B3 SINE B2 0 216 1 3 1371 249 277 62 0 chr3 103109077 103109142 -56490641 - ID4_ SINE ID -12 71 3 3 1371 434 224 238 25 chr3 103109623 103109783 -56490000 - B4A SINE B4 -97 195 2 3 1371 686 253 50 94 chr3 103109810 103110011 -56489772 - B3 SINE B2 -2 193 2 3 1371 28 0 0 26 chr3 103110037 103110052 -56489731 + AT_rich Low_complexity Low_complexity 1 15 0 3 1371 889 220 30 45 chr3 103110052 103110252 -56489531 - B3A SINE B2 0 198 2 3 1371 28 0 0 26 chr3 103110252 103110275 -56489508 + AT_rich Low_complexity Low_complexity 1 23 0 3 1371 608 225 81 56 chr3 103110278 103110438 -56489345 - B3A SINE B2 -12 186 23 3 1371 525 244 91 8 chr3 103110503 103110635 -56489148 - B1_Mur2 SINE Alu -5 144 2 3 1371 22 0 0 0 chr3 103110649 103110671 -56489112 + AT_rich Low_complexity Low_complexity 1 22 0 3 1371 312 91 0 0 chr3 103111410 103111454 -56488329 + (T)n Simple_repeat Simple_repeat 1 44 0 3 1371 1045 184 61 9 chr3 103112037 103112251 -56487532 + URR1B DNA MER1_type 1 225 0 3 1371 347 283 91 0 chr3 103112304 103112403 -56487380 - PB1 SINE Alu -17 110 3 3 1371 412 296 55 9 chr3 103112596 103112705 -56487078 - PB1D10 SINE Alu -2 115 2 3 1371 624 231 73 29 chr3 103112714 103112919 -56486864 - B3 SINE B2 0 216 3 3 1371 597 290 0 8 chr3 103113364 103113496 -56486287 + B3A SINE B2 4 134 -64 3 1371 1014 50 42 28 chr3 103113514 103113658 -56486125 - B1_Mus2 SINE Alu 0 147 2 3 1371 21 0 0 0 chr3 103113668 103113689 -56486094 + AT_rich Low_complexity Low_complexity 1 21 0 3 1371 822 154 43 14 chr3 103113807 103113945 -56485838 - B1_Mur2 SINE Alu -7 142 1 3 1371 212 286 0 0 chr3 103114946 103114995 -56484788 + (TATATG)n Simple_repeat Simple_repeat 4 52 0 3 1371 421 282 96 45 chr3 103114999 103115155 -56484628 - RSINE1 SINE B4 0 165 2 3 1371 205 196 22 0 chr3 103116921 103116967 -56482816 + (TTTG)n Simple_repeat Simple_repeat 1 47 0 3 1371 865 181 0 0 chr3 103116972 103117110 -56482673 - B1_Mus1 SINE Alu -6 142 5 3 1371 475 323 16 8 chr3 103117168 103117293 -56482490 - RSINE1 SINE B4 -35 130 5 3 1371 241 234 10 21 chr3 103117510 103117606 -56482177 + CT-rich Low_complexity Low_complexity 2 96 0 3 1371 1167 50 0 0 chr3 103117607 103117748 -56482035 - B1_Mus1 SINE Alu -6 142 2 3 1371 244 360 27 0 chr3 103117748 103117823 -56481960 - B1F2 SINE Alu -71 78 2 3 1371 216 341 21 62 chr3 103117823 103117845 -56481938 - ID_B1 SINE B4 -68 156 64 3 1371 300 276 482 13 chr3 103117947 103118179 -56481604 - MER21B LTR ERV1 -124 739 400 3 1371 297 375 76 32 chr3 103118193 103118350 -56481433 - MER21B LTR ERV1 -510 353 190 3 1371 273 274 157 19 chr3 103118455 103118563 -56481220 - B1F SINE Alu -26 123 1 3 1371 753 148 73 7 chr3 103118627 103118763 -56481020 + B1_Mur4 SINE Alu 3 147 -3 3 1371 301 327 28 107 chr3 103119347 103119525 -56480258 - MER21-int LTR ERV1 -2085 2106 1943 3 1371 513 0 0 0 chr3 103119709 103119766 -56480017 + (TG)n Simple_repeat Simple_repeat 2 58 0 3 1371 430 177 25 0 chr3 103119766 103119845 -56479938 - B1_Mm SINE Alu -3 144 64 3 1371 256 306 28 84 chr3 103119847 103119954 -56479829 + Tigger5 DNA MER2_type 86 186 -2220 4 1371 31 0 0 0 chr3 103119959 103119990 -56479793 + AT_rich Low_complexity Low_complexity 1 31 0 4 1371 298 267 92 103 chr3 103120008 103120192 -56479591 - B4 SINE B4 -2 290 109 4 1371 654 226 14 14 chr3 103121058 103121206 -56478577 - B1_Mus1 SINE Alu 0 148 1 4 1371 755 278 133 16 chr3 103121521 103121956 -56477827 + Tigger2b DNA MER2_type 1 486 -240 4 1371 495 212 127 15 chr3 103122136 103122270 -56477513 + B1_Mur2 SINE Alu 1 149 0 4 1371 213 274 262 0 chr3 103122275 103122359 -56477424 + B3 SINE B2 27 132 -84 4 1371 299 331 208 38 chr3 103122735 103123134 -56476649 + L2 LINE L2 388 854 -2565 4 1371 249 214 67 67 chr3 103123135 103123195 -56476588 - B1F SINE Alu -6 143 84 4 1371 1114 67 98 0 chr3 103123523 103123687 -56476096 - B2_Mm2 SINE B2 -14 181 2 4 1371 1252 267 63 45 chr3 103123688 103124135 -56475648 - Lx8 LINE L1 -434 7039 6585 4 1371 701 204 49 14 chr3 103125811 103125955 -56473828 - B1_Mur4 SINE Alu 0 150 2 4 1371 461 17 17 0 chr3 103126213 103126271 -56473512 + (CA)n Simple_repeat Simple_repeat 2 60 0 4 1371 444 246 73 17 chr3 103126482 103126661 -56473122 - B3 SINE B2 -1 194 2 4 1371 274 240 53 13 chr3 103126984 103127060 -56472723 + B3 SINE B2 7 85 -131 4 1371 400 200 38 0 chr3 103127052 103127132 -56472651 - B3A SINE B2 -114 84 2 4 1371 23 0 0 0 chr3 103127134 103127157 -56472626 + AT_rich Low_complexity Low_complexity 1 23 0 4 1371 666 251 104 0 chr3 103127158 103127341 -56472442 - B3 SINE B2 -6 210 9 4 1371 717 59 29 0 chr3 103128154 103128256 -56471527 + BC1_Mm scRNA scRNA 1 105 -47 4 1371 22 0 0 0 chr3 103128363 103128385 -56471398 + AT_rich Low_complexity Low_complexity 1 22 0 4 1371 340 298 91 39 chr3 103128836 103128957 -56470826 - B1_Mur3 SINE Alu -37 110 2 4 1371 785 184 0 39 chr3 103129329 103129482 -56470301 - B1_Mus1 SINE Alu 0 148 2 4 1371 244 394 38 19 chr3 103130313 103130419 -56469364 + PB1D10 SINE Alu 1 108 -9 4 1371 1096 48 14 7 chr3 103131286 103131432 -56468351 - B1_Mus1 SINE Alu 0 148 2 4 1371 297 296 60 24 chr3 103131503 103131586 -56468197 + PB1 SINE Alu 1 86 -41 4 1371 1008 206 15 40 chr3 103132057 103132259 -56467524 + B3 SINE B2 6 202 -14 4 1371 813 114 0 0 chr3 103132262 103132385 -56467398 + (GGAA)n Simple_repeat Simple_repeat 3 125 0 4 1371 240 243 14 14 chr3 103132388 103132459 -56467324 + A-rich Low_complexity Low_complexity 3 73 0 4 1371 335 231 103 15 chr3 103132559 103132695 -56467088 + RSINE1 SINE B4 85 281 -11 4 1371 924 157 0 0 chr3 103133794 103133941 -56465842 + B1_Mus2 SINE Alu 1 147 0 4 1371 619 238 16 0 chr3 103134734 103134856 -56464927 + ID_B1 SINE B4 93 216 -8 4 1371 233 307 91 0 chr3 103134868 103134956 -56464827 + B3 SINE B2 3 98 -118 4 1371 993 56 26 53 chr3 103136074 103136225 -56463558 - B1_Mus2 SINE Alu 0 147 1 4 1371 338 266 51 42 chr3 103136614 103136732 -56463051 - PB1D9 SINE Alu 0 120 2 4 1371 1410 73 16 10 chr3 103136746 103136940 -56462843 - B2_Mm2 SINE B2 0 195 1 4 1371 280 200 217 9 chr3 103137520 103137626 -56462157 - L1MB7 LINE L1 -271 5913 5786 4 1371 276 261 122 8 chr3 103137638 103137769 -56462014 - B1F SINE Alu 0 149 4 4 1371 822 166 203 0 chr3 103137908 103138095 -56461688 - URR1A DNA MER1_type -1 225 1 4 1371 198 0 0 0 chr3 103138179 103138201 -56461582 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 4 1371 367 144 78 96 chr3 103138276 103138391 -56461392 - Lx7 LINE L1 -333 7363 7251 4 1371 222 118 0 0 chr3 103138499 103138533 -56461250 + (TCCC)n Simple_repeat Simple_repeat 1 34 0 4 1371 488 282 53 0 chr3 103138533 103138664 -56461119 - B1_Mur1 SINE Alu -11 138 1 4 1371 265 263 0 0 chr3 103139677 103139753 -56460030 + T-rich Low_complexity Low_complexity 1 76 0 4 1371 277 24 23 23 chr3 103140327 103140370 -56459413 + (TTTTTG)n Simple_repeat Simple_repeat 2 44 0 4 1371 461 298 89 76 chr3 103141642 103141878 -56457905 - MLT2D LTR ERVL -63 351 113 4 1371 338 285 142 30 chr3 103142327 103142461 -56457322 - B1F SINE Alu 0 149 1 4 1371 814 184 0 20 chr3 103142577 103142727 -56457056 - B1_Mus1 SINE Alu -1 147 1 4 1371 325 292 34 0 chr3 103142836 103142925 -56456858 + PB1D10 SINE Alu 15 106 -11 4 1371 248 277 61 66 chr3 103143304 103143501 -56456282 - L1MC5 LINE L1 -36 7925 7730 4 1371 399 275 142 0 chr3 103143810 103143930 -56455853 - B4A SINE B4 -11 281 145 4 1371 462 232 26 72 chr3 103143936 103144089 -56455694 - RSINE1 SINE B4 -1 164 19 4 1371 252 86 0 0 chr3 103144458 103144493 -56455290 + (TA)n Simple_repeat Simple_repeat 2 36 0 4 1371 192 118 0 0 chr3 103144654 103144674 -56455109 + (T)n Simple_repeat Simple_repeat 1 20 0 4 1371 1140 68 0 0 chr3 103144674 103144820 -56454963 - B1_Mus2 SINE Alu 0 147 2 4 1371 192 118 0 0 chr3 103144820 103144833 -56454950 + (T)n Simple_repeat Simple_repeat 1 13 0 4 1371 1372 64 37 11 chr3 103145776 103145965 -56453818 + B2_Mm2 SINE B2 2 195 0 4 1371 2380 68 25 9 chr3 103145983 103146309 -56453474 + L1_Mus3 LINE L1 6302 6632 -6 4 1371 648 93 31 0 chr3 103146817 103146914 -56452869 + B2_Mm2 SINE B2 2 101 -94 4 1371 294 29 0 0 chr3 103146939 103146974 -56452809 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 4 1371 1164 42 14 0 chr3 103146983 103147127 -56452656 + B1_Mus1 SINE Alu 2 147 -1 4 1371 2103 150 116 25 chr3 103147231 103147700 -56452083 - RMER4B LTR ERVK -9 457 17 4 1371 492 206 39 96 chr3 103147761 103147917 -56451866 - B1_Mus1 SINE Alu -1 147 1 4 1371 308 277 0 15 chr3 103148710 103148776 -56451007 + tRNA-Ala-GCY_ tRNA tRNA 3 67 -8 4 1371 254 312 0 83 chr3 103148776 103148794 -56450989 + BC1_Mm scRNA scRNA 9 85 -67 4 1371 598 244 78 13 chr3 103148954 103149108 -56450675 - RSINE1 SINE B4 0 165 2 4 1371 788 191 43 0 chr3 103149172 103149313 -56450470 - B1_Mur2 SINE Alu -2 147 1 4 1371 1127 44 0 0 chr3 103149918 103150055 -56449728 + B1_Mus1 SINE Alu 2 138 -10 4 1371 185 0 40 0 chr3 103150055 103150080 -56449703 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 4 1371 1210 48 0 0 chr3 103150276 103150423 -56449360 + B1_Mus2 SINE Alu 1 147 0 4 1371 234 91 0 0 chr3 103150423 103150456 -56449327 + (A)n Simple_repeat Simple_repeat 1 33 0 4 1371 210 351 143 0 chr3 103150884 103150961 -56448822 - B1F1 SINE Alu -61 88 1 4 1371 941 42 0 0 chr3 103151552 103151672 -56448111 + B1_Mus2 SINE Alu 13 132 -15 4 1371 23 0 0 0 chr3 103151676 103151699 -56448084 + GC_rich Low_complexity Low_complexity 1 23 0 4 1371 386 218 118 10 chr3 103151703 103151805 -56447978 + B1F2 SINE Alu 37 149 0 4 1371 412 255 20 0 chr3 103152800 103152898 -56446885 - PB1D9 SINE Alu 0 120 21 4 1371 662 274 66 5 chr3 103152940 103153138 -56446645 - B3 SINE B2 -6 210 1 4 1371 587 284 40 0 chr3 103153171 103153319 -56446464 - B3 SINE B2 -14 202 49 4 1371 403 156 50 100 chr3 103153389 103153489 -56446294 - PB1D9 SINE Alu 0 120 26 4 171 484 182 95 40 chr3 103153541 103153667 -56446116 - RLTR47_MM LTR ERV1 -84 448 316 4 1372 1614 32 0 0 chr3 103153836 103154021 -56445762 + B2_Mm1t SINE B2 2 186 -7 4 1372 1093 49 28 0 chr3 103154198 103154342 -56445441 - B1_Mus1 SINE Alu 0 148 1 4 1372 299 253 172 21 chr3 103155036 103155112 -56444671 + PB1D10 SINE Alu 3 87 -30 4 1372 883 47 302 7 chr3 103155112 103155261 -56444522 - B2_Mm2 SINE B2 -1 194 2 4 1372 299 253 172 21 chr3 103155261 103155277 -56444506 + PB1D10 SINE Alu 88 109 -8 4 1372 243 61 0 0 chr3 103155438 103155471 -56444312 + (T)n Simple_repeat Simple_repeat 1 33 0 4 1372 642 119 91 9 chr3 103155748 103155858 -56443925 + PB1D9 SINE Alu 2 120 0 4 1372 750 211 0 21 chr3 103156956 103157101 -56442682 + B1_Mur2 SINE Alu 2 143 -6 4 1372 24 32 0 0 chr3 103159680 103159711 -56440072 + AT_rich Low_complexity Low_complexity 1 31 0 4 1372 517 326 32 43 chr3 103161083 103161269 -56438514 + B4 SINE B4 2 185 -107 4 1372 213 193 140 0 chr3 103161269 103161326 -56438457 + RSINE1 SINE B4 97 161 -4 4 1372 1135 100 53 0 chr3 103163339 103163509 -56436274 + B2_Mm2 SINE B2 3 181 -14 4 1372 772 169 81 0 chr3 103163532 103163668 -56436115 - B1_Mus2 SINE Alu 0 147 1 4 1372 369 309 43 0 chr3 103163681 103163775 -56436008 + PB1D7 SINE Alu 16 113 -7 4 1372 28 29 0 0 chr3 103164105 103164140 -56435643 + AT_rich Low_complexity Low_complexity 1 35 0 4 1372 251 338 0 0 chr3 103164350 103164427 -56435356 - PB1 SINE Alu -33 94 18 4 1372 368 202 0 77 chr3 103164856 103164947 -56434836 - Lx8 LINE L1 -116 7357 7274 4 1372 781 230 18 18 chr3 103164967 103165131 -56434652 - Lx8 LINE L1 -673 6800 6637 4 1372 510 280 157 24 chr3 103165133 103165482 -56434301 - MTD LTR MaLR -4 417 1 4 1372 325 284 25 0 chr3 103165482 103165563 -56434220 - Lx8 LINE L1 -842 6631 6549 4 1372 608 220 173 16 chr3 103165565 103165750 -56434033 + ID_B1 SINE B4 4 217 -7 4 1372 788 195 189 5 chr3 103165766 103165962 -56433821 - MTD LTR MaLR -181 238 7 4 1372 378 228 5 35 chr3 103166120 103166241 -56433542 + PB1 SINE Alu 13 148 -1 4 1372 314 241 247 24 chr3 103166386 103166552 -56433231 + L1M4c LINE L1 1282 1484 -4900 4 1372 281 253 49 37 chr3 103166583 103166665 -56433118 - ID_B1 SINE B4 -12 212 130 5 1372 348 229 24 12 chr3 103166666 103166750 -56433033 - MTC LTR MaLR -331 90 6 5 1372 1230 106 11 6 chr3 103167236 103167416 -56432367 + B2_Mm1t SINE B2 2 182 -11 5 1372 371 90 77 9 chr3 103167449 103167549 -56432234 + B2_Mm2 SINE B2 51 192 -3 5 1372 339 136 0 33 chr3 103167544 103167605 -56432178 + B4 SINE B4 81 139 -153 5 1372 1133 133 65 30 chr3 103167554 103167755 -56432028 + ORR1A2 LTR MaLR 79 286 -41 5 1372 1252 14 14 0 chr3 103167766 103167910 -56431873 + B1_Mm SINE Alu 1 146 -1 5 1372 331 225 56 0 chr3 103167948 103168019 -56431764 + MTE2b LTR MaLR 1 75 -304 5 1372 310 228 152 68 chr3 103168054 103168186 -56431597 + MTE2b LTR MaLR 164 313 -66 5 1372 225 255 45 89 chr3 103168581 103168693 -56431090 + Charlie12 DNA MER1_type 1385 1491 -1382 5 1372 210 271 0 0 chr3 103169753 103169801 -56429982 + (TG)n Simple_repeat Simple_repeat 1 48 0 5 1372 650 228 40 27 chr3 103169801 103169950 -56429833 - RSINE1 SINE B4 0 165 15 5 1372 304 232 71 35 chr3 103170289 103170374 -56429409 + RSINE1 SINE B4 61 148 -17 5 1372 32 0 0 0 chr3 103170374 103170406 -56429377 + AT_rich Low_complexity Low_complexity 1 32 0 5 1372 203 184 105 0 chr3 103171410 103171448 -56428335 - MIR SINE MIR -6 256 215 5 1372 396 242 130 24 chr3 103171498 103171621 -56428162 - B1F1 SINE Alu -5 144 9 5 1372 2087 118 21 12 chr3 103171905 103172231 -56427552 - ORR1A4 LTR MaLR 0 329 1 5 1372 7247 136 166 149 chr3 103172231 103174161 -56425622 - ORR1A4-int LTR MaLR 0 1963 1 5 1372 998 83 80 0 chr3 103174161 103174336 -56425447 - ORR1A4 LTR MaLR 0 329 111 5 1372 667 207 207 0 chr3 103174609 103174788 -56424995 - B3 SINE B2 0 216 1 5 1372 397 260 50 0 chr3 103174954 103175054 -56424729 - ID_B1 SINE B4 -28 196 92 5 1372 225 260 40 0 chr3 103175118 103175168 -56424615 - B1F2 SINE Alu -95 54 3 5 1372 1180 50 0 0 chr3 103175415 103175555 -56424228 + B1_Mm SINE Alu 2 141 -6 5 1372 612 40 0 0 chr3 103175557 103175632 -56424151 + (GA)n Simple_repeat Simple_repeat 2 76 0 5 1372 448 237 74 124 chr3 103176347 103176564 -56423219 + RMER2 LTR ERV1 334 539 -28 5 1372 280 138 3 20 chr3 103176586 103176653 -56423130 - B1_Mur3 SINE Alu -80 68 3 5 1372 396 243 88 18 chr3 103176789 103176896 -56422887 + ID_B1 SINE B4 92 208 -16 5 1372 770 81 9 0 chr3 103176896 103177007 -56422776 + (TTCTC)n Simple_repeat Simple_repeat 1 112 0 5 1372 914 160 0 6 chr3 103177020 103177190 -56422593 + CT-rich Low_complexity Low_complexity 2 170 0 5 1372 488 16 16 0 chr3 103177181 103177242 -56422541 + (TC)n Simple_repeat Simple_repeat 1 62 0 5 1372 678 131 10 0 chr3 103177244 103177343 -56422440 - B1_Mur3 SINE Alu -9 140 41 5 1372 276 254 103 15 chr3 103177396 103177464 -56422319 + ID4_ SINE ID 4 77 -6 5 1372 752 230 88 16 chr3 103178069 103178263 -56421520 + B3 SINE B2 5 212 -4 5 1372 1641 122 45 4 chr3 103178409 103178673 -56421110 - Lx5 LINE L1 -991 6059 5785 5 1372 712 19 221 0 chr3 103178674 103178778 -56421005 - L1Md_A LINE L1 -2 6580 6454 5 1372 449 184 19 25 chr3 103178906 103179068 -56420715 + (TG)n Simple_repeat Simple_repeat 1 161 0 5 1372 916 174 7 0 chr3 103180102 103180251 -56419532 - B1_Mur4 SINE Alu 0 150 1 5 1372 660 218 28 66 chr3 103180259 103180441 -56419342 - B3A SINE B2 -4 194 20 5 1372 1166 168 48 5 chr3 103180514 103180724 -56419059 - MTD LTR MaLR 0 419 201 5 1372 183 42 0 0 chr3 103181309 103181333 -56418450 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 5 1372 1194 50 0 0 chr3 103181334 103181475 -56418308 - B1_Mus2 SINE Alu -6 141 1 5 1372 1722 62 175 114 chr3 103181596 103181655 -56418128 - ORR1A2 LTR MaLR 0 327 277 5 1372 1220 61 0 0 chr3 103181655 103181802 -56417981 - B1_Mm SINE Alu 0 147 1 5 1372 1722 62 175 114 chr3 103181802 103182050 -56417733 - ORR1A2 LTR MaLR -51 276 1 5 1372 283 200 163 78 chr3 103182074 103182215 -56417568 - MER57D LTR ERV1 -121 313 161 5 1372 320 264 25 91 chr3 103182413 103182534 -56417249 + RMER12 LTR ERVK 749 861 -461 5 1372 1014 98 0 0 chr3 103182652 103182805 -56416978 + (TG)n Simple_repeat Simple_repeat 2 154 0 5 1372 451 258 24 32 chr3 103182919 103183043 -56416740 + RSINE1 SINE B4 11 133 -32 5 1372 237 186 0 23 chr3 103183128 103183172 -56416611 - 7SK RNA RNA -104 227 185 5 1372 414 0 0 0 chr3 103183231 103183277 -56416506 + (CA)n Simple_repeat Simple_repeat 2 47 0 5 1372 394 286 24 8 chr3 103183527 103183654 -56416129 - 7SK RNA RNA -202 129 1 5 1372 1595 48 0 0 chr3 103184335 103184523 -56415260 + B2_Mm1a SINE B2 3 190 -3 5 1372 749 214 6 31 chr3 103185933 103186121 -56413662 - B3 SINE B2 -5 190 15 5 1372 216 200 0 0 chr3 103186122 103186167 -56413616 + (CACCAT)n Simple_repeat Simple_repeat 3 47 0 5 1372 333 281 36 12 chr3 103186177 103186260 -56413523 - RSINE1 SINE B4 -15 150 66 5 1372 2589 93 29 36 chr3 103186275 103186689 -56413094 - IAPLTR2a LTR ERVK 0 411 1 5 1372 865 169 143 0 chr3 103186772 103186961 -56412822 - B3 SINE B2 0 216 1 5 1372 438 178 108 10 chr3 103186968 103187070 -56412713 - PB1D10 SINE Alu -4 113 2 5 1372 285 51 0 0 chr3 103187863 103187902 -56411881 + (T)n Simple_repeat Simple_repeat 1 39 0 5 1372 185 182 44 22 chr3 103188385 103188430 -56411353 + L3 LINE CR1 2164 2209 -2280 5 1372 512 297 51 55 chr3 103188434 103188726 -56411057 + B4A SINE B4 2 292 0 5 1372 287 295 40 24 chr3 103189193 103189318 -56410465 - MLT1N2 LTR MaLR -14 548 422 5 1372 223 28 56 0 chr3 103190059 103190095 -56409688 + (CATAA)n Simple_repeat Simple_repeat 5 42 0 5 1372 478 0 32 0 chr3 103190161 103190223 -56409560 + (CA)n Simple_repeat Simple_repeat 2 65 0 5 1372 617 200 63 103 chr3 103190326 103190487 -56409296 - B3 SINE B2 -6 210 47 5 1372 725 124 139 0 chr3 103191432 103191561 -56408222 + B1_Mus2 SINE Alu 1 147 0 5 1372 234 0 0 0 chr3 103191637 103191663 -56408120 + (CAAAA)n Simple_repeat Simple_repeat 4 29 0 5 1372 783 197 14 7 chr3 103191701 103191839 -56407944 + B1_Mus1 SINE Alu 1 139 -9 5 1372 1202 61 7 0 chr3 103192068 103192215 -56407568 - B1_Mus1 SINE Alu 0 148 1 5 1372 306 73 0 0 chr3 103192271 103192312 -56407471 + (CAGA)n Simple_repeat Simple_repeat 2 42 0 5 1372 384 154 15 0 chr3 103192357 103192422 -56407361 + MT2A LTR ERVL 1 66 -467 5 1372 960 126 0 0 chr3 103192425 103192576 -56407207 + (TTTC)n Simple_repeat Simple_repeat 2 152 0 5 1372 724 211 224 10 chr3 103193007 103193320 -56406463 + MT2A LTR ERVL 75 455 -78 5 1372 621 264 65 33 chr3 103193341 103193525 -56406258 - MLT2B1 LTR ERVL -325 195 6 5 1372 3006 154 126 25 chr3 103193734 103194669 -56405114 - RLTR13D1 LTR ERVK 0 1023 2 5 1372 259 312 63 8 chr3 103195632 103195758 -56404025 + L1M4 LINE L1 2345 2477 -3669 5 1372 3206 54 13 5 chr3 103195789 103196182 -56403601 + MTA_Mm LTR MaLR 1 396 0 5 1372 379 335 11 5 chr3 103196396 103196585 -56403198 + L1M4 LINE L1 2843 3032 -3114 5 1372 261 0 0 0 chr3 103196585 103196614 -56403169 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 5 1372 1318 159 9 14 chr3 103196618 103196835 -56402948 + B3 SINE B2 1 216 0 5 1372 1248 198 114 43 chr3 103197115 103197395 -56402388 + RMER1B Other Other 46 345 -721 5 1372 1238 232 77 25 chr3 103197408 103197915 -56401868 + RMER1A Other Other 2 455 -575 5 1372 1964 241 191 23 chr3 103197915 103198487 -56401296 + RMER1A Other Other 42 709 -321 5 1372 212 130 22 0 chr3 103198536 103198582 -56401201 + (TA)n Simple_repeat Simple_repeat 2 48 0 5 1372 1313 160 49 0 chr3 103198718 103198943 -56400840 + ORR1B1 LTR MaLR 151 386 -8 5 1372 430 324 28 17 chr3 103198946 103199125 -56400658 - Charlie1a DNA MER1_type -970 485 305 5 1372 429 155 165 0 chr3 103199132 103199229 -56400554 + B3A SINE B2 1 113 -85 5 1372 390 296 103 27 chr3 103199925 103199992 -56399791 + B3 SINE B2 60 140 -76 5 1372 1522 47 16 16 chr3 103199992 103200186 -56399597 - B2_Mm2 SINE B2 -1 194 1 5 1372 390 296 103 27 chr3 103200186 103200264 -56399519 + B3 SINE B2 141 216 0 5 1372 415 245 128 0 chr3 103200303 103200405 -56399378 - PB1 SINE Alu -2 125 11 5 1372 515 293 30 0 chr3 103200405 103200538 -56399245 + MTEa LTR MaLR 1 137 -242 5 1372 759 303 90 19 chr3 103200570 103200880 -56398903 + MT2A LTR ERVL 190 521 -12 5 1372 896 250 10 5 chr3 103200951 103201152 -56398631 - B4A SINE B4 -4 288 87 5 1372 636 296 69 51 chr3 103201180 103201454 -56398329 - Charlie1a DNA MER1_type -1176 279 1 5 1372 423 0 0 0 chr3 103201639 103201686 -56398097 + (TG)n Simple_repeat Simple_repeat 2 48 0 5 1372 3370 33 2 22 chr3 103201912 103202316 -56397467 + MTA_Mm LTR MaLR 1 396 0 5 1372 647 234 86 86 chr3 103202780 103202920 -56396863 + ID_B1 SINE B4 2 152 -72 5 1372 1355 86 37 16 chr3 103202920 103203110 -56396673 + B2_Mm2 SINE B2 2 195 0 5 1372 647 234 86 86 chr3 103203110 103203179 -56396604 + ID_B1 SINE B4 153 211 -13 5 1372 216 0 0 0 chr3 103203179 103203203 -56396580 + (T)n Simple_repeat Simple_repeat 1 24 0 5 1372 8142 53 5 17 chr3 103203285 103204426 -56395357 + L1_Mus2 LINE L1 5439 6566 0 5 1372 1190 48 0 20 chr3 103204433 103204583 -56395200 + B1_Mus1 SINE Alu 2 148 0 5 1372 243 225 24 36 chr3 103204583 103204666 -56395117 + A-rich Low_complexity Low_complexity 1 82 0 5 1372 195 326 40 80 chr3 103204942 103205042 -56394741 + MIRm SINE MIR 180 275 -1 5 1372 294 299 0 0 chr3 103204968 103205045 -56394738 + L2c LINE L2 3311 3387 0 5 1372 27 0 0 0 chr3 103205775 103205802 -56393981 + GC_rich Low_complexity Low_complexity 1 27 0 5 1372 462 205 0 0 chr3 103206725 103206803 -56392980 - ID4_ SINE ID -2 81 4 5 1372 205 284 28 38 chr3 103206871 103206977 -56392806 + G-rich Low_complexity Low_complexity 3 107 0 5 1372 339 298 15 0 chr3 103207592 103207723 -56392060 + G-rich Low_complexity Low_complexity 3 135 0 6 1372 435 245 58 19 chr3 103207891 103208006 -56391777 + RSINE1 SINE B4 1 112 -180 6 1372 721 94 50 0 chr3 103208015 103208175 -56391608 + (CA)n Simple_repeat Simple_repeat 2 169 0 6 1372 450 0 0 0 chr3 103208215 103208265 -56391518 + (CA)n Simple_repeat Simple_repeat 1 50 0 6 1372 219 299 0 46 chr3 103208615 103208689 -56391094 - BC1_Mm scRNA scRNA -74 78 8 6 1372 247 233 65 22 chr3 103208738 103208830 -56390953 - L1M4 LINE L1 -1000 5146 5051 6 1372 898 169 0 0 chr3 103208830 103208972 -56390811 + B1_Mur2 SINE Alu 1 142 -7 6 1372 3046 105 15 18 chr3 103209048 103209505 -56390278 - RMER6B LTR ERVK -3 458 3 6 1372 342 140 0 0 chr3 103209591 103209641 -56390142 + B3 SINE B2 2 51 -165 6 1372 383 20 0 0 chr3 103209634 103209683 -56390100 + B2_Mm1t SINE B2 131 179 -14 6 1372 836 173 0 7 chr3 103209717 103209868 -56389915 + B1_Mur4 SINE Alu 1 150 0 6 1372 201 147 0 0 chr3 103209868 103209902 -56389881 + (A)n Simple_repeat Simple_repeat 1 34 0 6 1372 364 366 62 11 chr3 103209959 103210136 -56389647 - L1M4 LINE L1 -1584 4562 4377 6 1372 2527 178 79 40 chr3 103210137 103210730 -56389053 + RMER1B Other Other 448 1063 -3 6 1372 305 283 17 17 chr3 103210776 103210891 -56388892 + PB1D10 SINE Alu 2 116 -1 6 1372 464 316 104 27 chr3 103210946 103211167 -56388616 - B4A SINE B4 0 292 55 6 1372 242 309 44 0 chr3 103211326 103211394 -56388389 - PB1D9 SINE Alu -13 107 37 6 1372 241 286 18 0 chr3 103211347 103211403 -56388380 - MT2B2 LTR ERVL -343 241 185 6 1372 213 294 0 0 chr3 103211466 103211575 -56388208 + (TG)n Simple_repeat Simple_repeat 2 110 0 6 1372 576 29 0 0 chr3 103211595 103211665 -56388118 + (TTTC)n Simple_repeat Simple_repeat 1 70 0 6 1372 818 151 12 0 chr3 103211665 103211831 -56387952 + CT-rich Low_complexity Low_complexity 1 168 0 6 1372 794 281 98 38 chr3 103211831 103212069 -56387714 - L1M4 LINE L1 -1985 4161 3913 6 1372 1191 75 0 0 chr3 103212069 103212215 -56387568 - B1_Mm SINE Alu -1 146 1 6 1372 794 281 98 38 chr3 103212215 103212424 -56387359 - L1M4 LINE L1 -2234 3912 3687 6 1372 266 117 83 21 chr3 103212439 103212535 -56387248 + (TA)n Simple_repeat Simple_repeat 2 103 0 6 1372 207 0 0 0 chr3 103212552 103212575 -56387208 + (TG)n Simple_repeat Simple_repeat 2 24 0 6 1372 414 328 94 30 chr3 103212578 103212779 -56387004 - L1M4 LINE L1 -2498 3648 3435 6 1372 1031 156 48 14 chr3 103212790 103212998 -56386785 - B3 SINE B2 0 216 2 6 1372 280 125 34 51 chr3 103213404 103213463 -56386320 + PB1D9 SINE Alu 2 59 -61 6 1372 583 168 9 45 chr3 103213557 103213669 -56386114 + B1_Mur1 SINE Alu 42 149 0 6 1372 587 281 0 43 chr3 103213678 103213819 -56385964 + RSINE1 SINE B4 3 137 -28 6 1372 687 46 0 0 chr3 103213826 103213913 -56385870 + (CA)n Simple_repeat Simple_repeat 2 88 0 6 1372 1257 97 117 0 chr3 103213992 103214188 -56385595 + URR1A DNA MER1_type 7 225 -1 6 1372 22 35 0 0 chr3 103214403 103214432 -56385351 + AT_rich Low_complexity Low_complexity 1 29 0 6 1372 288 244 35 211 chr3 103214512 103214683 -56385100 - B1F SINE Alu 0 149 9 6 1372 368 236 115 23 chr3 103214580 103214710 -56385073 - ID_B1 SINE B4 -25 199 58 6 1372 204 40 0 0 chr3 103215290 103215315 -56384468 + (TG)n Simple_repeat Simple_repeat 1 25 0 6 1372 363 219 27 0 chr3 103217353 103217426 -56382357 + B1F SINE Alu 66 140 -9 6 1372 633 176 0 16 chr3 103217536 103217657 -56382126 + PB1D9 SINE Alu 1 119 -1 6 1372 726 136 0 0 chr3 103217657 103217775 -56382008 + (GA)n Simple_repeat Simple_repeat 1 118 0 6 1372 4998 60 0 2 chr3 103217842 103218465 -56381318 - L1Md_F2 LINE L1 0 6582 5961 6 1372 448 213 139 0 chr3 103218509 103218617 -56381166 + RMER15 LTR ERVL 239 361 -214 6 1372 960 94 0 0 chr3 103219983 103220142 -56379641 + (CAG)n Simple_repeat Simple_repeat 1 159 0 6 1372 193 0 0 159 chr3 103220623 103220786 -56378997 + GA-rich Low_complexity Low_complexity 3 139 0 6 1372 241 323 60 10 chr3 103220828 103220928 -56378855 - MER113 DNA MER1_type -349 172 68 6 1372 761 213 36 26 chr3 103221370 103221563 -56378220 - B3A SINE B2 0 198 4 6 1372 730 305 93 47 chr3 103221586 103222011 -56377772 - MLT1G1 LTR MaLR 0 489 75 6 1372 475 293 109 71 chr3 103222064 103222130 -56377653 + HAL1b LINE L1 1693 1760 -249 6 1372 881 125 50 29 chr3 103222130 103222270 -56377513 - B1_Mus1 SINE Alu -5 143 1 6 1372 475 293 109 71 chr3 103222270 103222486 -56377297 + HAL1b LINE L1 1761 1985 -24 6 1372 468 0 0 0 chr3 103222491 103222543 -56377240 + (TG)n Simple_repeat Simple_repeat 2 53 0 6 1372 374 294 25 16 chr3 103222543 103222664 -56377119 - RSINE1 SINE B4 -41 124 3 6 1372 360 0 0 0 chr3 103222718 103222758 -56377025 + (TTTTG)n Simple_repeat Simple_repeat 4 43 0 6 1372 807 85 195 0 chr3 103222760 103222878 -56376905 - B1_Mus2 SINE Alu -6 141 1 6 1372 381 22 0 0 chr3 103224445 103224491 -56375292 + (GA)n Simple_repeat Simple_repeat 1 46 0 6 1372 188 232 91 68 chr3 103225430 103225518 -56374265 + L4 LINE RTE 1509 1598 -431 6 1372 248 312 99 18 chr3 103225735 103225846 -56373937 - MIRc SINE MIR -121 147 28 6 1372 442 356 25 12 chr3 103225901 103226063 -56373720 - MLT2B4 LTR ERVL -352 204 41 6 1372 458 210 0 0 chr3 103226128 103226209 -56373574 - B3 SINE B2 -126 90 10 6 1372 277 333 13 0 chr3 103226299 103226377 -56373406 - ID4 SINE ID -4 79 1 6 1372 903 169 79 6 chr3 103226395 103226573 -56373210 + URR1A DNA MER1_type 30 220 -6 6 1372 394 140 0 0 chr3 103226595 103226652 -56373131 - B1F SINE Alu -92 57 1 6 1372 978 174 94 25 chr3 103227084 103227285 -56372498 + URR1A DNA MER1_type 1 215 -11 6 1372 4129 121 141 35 chr3 103227990 103228854 -56370929 - RMER17B LTR ERVK -1 957 2 6 1372 279 0 0 0 chr3 103229440 103229471 -56370312 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 6 1372 303 335 85 25 chr3 103229493 103229692 -56370091 + L1MB7 LINE L1 5964 6174 -10 6 1372 353 237 26 0 chr3 103230350 103230426 -56369357 - PB1D7 SINE Alu -42 78 1 6 1372 419 305 47 0 chr3 103230467 103230595 -56369188 - MER2 DNA MER2_type 0 345 212 6 1372 265 296 152 16 chr3 103230592 103230701 -56369082 - B1F SINE Alu -1 116 2 6 1372 341 117 17 0 chr3 103230863 103230923 -56368860 + (TG)n Simple_repeat Simple_repeat 1 61 0 6 1372 976 244 35 44 chr3 103230988 103231273 -56368510 - ID_B1 SINE B4 0 292 3 6 1372 1010 0 0 0 chr3 103231359 103231466 -56368317 + U6 snRNA snRNA 1 107 0 6 1372 6806 16 0 0 chr3 103231466 103232229 -56367554 + L1Md_T LINE L1 4824 5586 -297 6 1372 9203 4 0 0 chr3 103232229 103233225 -56366558 + L1Md_T LINE L1 5587 6582 0 6 1372 743 259 137 0 chr3 103234300 103234497 -56365286 + ID_B1 SINE B4 1 224 0 6 1372 408 311 29 22 chr3 103234518 103234656 -56365127 + B1F1 SINE Alu 10 148 -1 6 1372 3180 14 0 0 chr3 103234657 103235003 -56364780 - ORR1A0 LTR MaLR 0 346 1 6 1372 298 328 168 33 chr3 103235278 103235612 -56364171 + L2a LINE L2 3018 3396 -30 6 1372 183 80 0 0 chr3 103235704 103235729 -56364054 + (TGGG)n Simple_repeat Simple_repeat 1 25 0 6 1372 685 272 10 30 chr3 103235899 103236096 -56363687 - B3A SINE B2 -4 194 2 6 1372 593 259 35 7 chr3 103236102 103236246 -56363537 - B1F SINE Alu -1 148 1 6 1372 186 189 27 0 chr3 103236709 103236746 -56363037 - L2b LINE L2 -240 3135 3098 6 1372 612 212 220 16 chr3 103236771 103236953 -56362830 + ID_B1 SINE B4 2 220 -4 6 1372 262 291 101 69 chr3 103236990 103237178 -56362605 - MTEa LTR MaLR -6 373 180 6 1372 180 284 176 0 chr3 103237574 103237648 -56362135 - MIR SINE MIR 0 262 176 6 1372 194 0 39 0 chr3 103237655 103237681 -56362102 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 6 1372 239 271 82 0 chr3 103237683 103237768 -56362015 - MIR SINE MIR -9 253 162 6 1372 313 355 57 31 chr3 103238346 103238538 -56361245 + Charlie7 DNA MER1_type 30 226 -2386 6 1372 255 114 0 0 chr3 103238584 103238628 -56361155 + (GA)n Simple_repeat Simple_repeat 1 44 0 6 1372 963 173 17 34 chr3 103238628 103238807 -56360976 - ORR1D1 LTR MaLR -193 181 6 6 1372 290 302 23 11 chr3 103238809 103238896 -56360887 - B4A SINE B4 -199 93 6 6 1372 625 351 22 13 chr3 103238906 103239131 -56360652 - B4A SINE B4 -65 227 1 6 1372 541 184 8 42 chr3 103239155 103239265 -56360518 - B1_Mus1 SINE Alu -8 112 1 6 1372 1982 210 43 4 chr3 103239669 103240072 -56359711 + MTD LTR MaLR 2 403 -16 6 1372 183 306 196 18 chr3 103240330 103240493 -56359290 + MIRb SINE MIR 71 262 -6 6 1372 199 244 0 0 chr3 103240538 103240583 -56359200 - L2c LINE L2 -15 3372 3328 6 1372 207 0 0 0 chr3 103240634 103240657 -56359126 + (TG)n Simple_repeat Simple_repeat 2 24 0 6 1372 446 234 75 0 chr3 103240658 103240765 -56359018 - B1F SINE Alu -10 139 25 6 1372 368 272 84 46 chr3 103240765 103240789 -56358994 - ID_B1 SINE B4 -10 214 79 6 1372 1134 107 5 142 chr3 103241650 103241834 -56357949 - B2_Mm1t SINE B2 -4 189 35 6 1372 3242 53 5 5 chr3 103241834 103242230 -56357553 - MTA_Mm LTR MaLR 0 396 1 6 1372 1134 107 5 142 chr3 103242230 103242263 -56357520 - B2_Mm1t SINE B2 -159 34 2 6 1372 201 74 0 0 chr3 103242285 103242312 -56357471 + (TTTA)n Simple_repeat Simple_repeat 4 30 0 6 1372 937 80 29 32 chr3 103242316 103242472 -56357311 - B2_Mm2 SINE B2 -47 169 1 6 1372 242 265 19 75 chr3 103242536 103242642 -56357141 + MT2B2 LTR ERVL 159 258 -326 6 1372 338 236 57 41 chr3 103242553 103242697 -56357086 + PB1D10 SINE Alu 13 148 -1 6 1372 180 0 0 0 chr3 103243233 103243253 -56356530 + (TAAAAA)n Simple_repeat Simple_repeat 3 22 0 6 1372 252 339 76 0 chr3 103243359 103243477 -56356306 - MIRb SINE MIR -47 221 95 6 1372 339 85 0 0 chr3 103243557 103243604 -56356179 + (CCA)n Simple_repeat Simple_repeat 1 47 0 7 1372 423 38 0 0 chr3 103243657 103243710 -56356073 + (TG)n Simple_repeat Simple_repeat 2 54 0 7 1372 256 316 26 0 chr3 103243734 103243810 -56355973 + ID4_ SINE ID 2 79 -4 7 1372 417 202 104 9 chr3 103243822 103243937 -56355846 - L1M4 LINE L1 -2692 3454 3329 7 1372 545 292 0 0 chr3 103243955 103244099 -56355684 - U1 snRNA snRNA -2 163 20 7 1372 482 282 181 6 chr3 103244204 103244386 -56355397 - B4A SINE B4 -73 219 6 7 1372 593 277 62 64 chr3 103244387 103244465 -56355318 - L1MCa LINE L1 -3315 3006 2938 7 1372 297 0 0 0 chr3 103244465 103244498 -56355285 + (TTA)n Simple_repeat Simple_repeat 3 35 0 7 1372 593 277 62 64 chr3 103244498 103244808 -56354975 - L1MCa LINE L1 -3384 2937 2619 7 1372 257 211 64 26 chr3 103244882 103244960 -56354823 - ID4_ SINE ID 0 83 3 7 1372 353 279 18 46 chr3 103244960 103245069 -56354714 - PB1D10 SINE Alu -1 116 11 7 1372 207 186 0 0 chr3 103245115 103245158 -56354625 + (TA)n Simple_repeat Simple_repeat 2 44 0 7 1372 1873 247 123 35 chr3 103245234 103246173 -56353610 - L1MCa LINE L1 -4607 1901 821 7 1372 249 94 0 0 chr3 103246181 103246213 -56353570 - ID_B1 SINE B4 -7 217 186 7 1372 1306 293 107 4 chr3 103246324 103246811 -56352972 - L1MCa LINE L1 -5898 610 74 7 1372 217 132 0 0 chr3 103246811 103246849 -56352934 + (TC)n Simple_repeat Simple_repeat 1 38 0 7 1372 857 292 117 15 chr3 103246849 103247113 -56352670 - B4A SINE B4 0 292 2 7 1372 605 321 32 27 chr3 103247693 103247914 -56351869 - RMER15 LTR ERVL 0 575 354 7 1372 692 147 28 6 chr3 103248366 103248697 -56351086 + (CA)n Simple_repeat Simple_repeat 1 338 0 7 1372 501 325 147 0 chr3 103248955 103249207 -56350576 - B4A SINE B4 0 292 4 7 1372 43 56 0 0 chr3 103249214 103249285 -56350498 + AT_rich Low_complexity Low_complexity 1 71 0 7 1372 2634 58 0 6 chr3 103249288 103249619 -56350164 - L1_Mus2 LINE L1 -2 6564 6236 7 1372 816 67 29 0 chr3 103249619 103249723 -56350060 - U6 snRNA snRNA 0 107 1 7 1372 244 288 61 0 chr3 103249726 103249792 -56349991 - PB1D10 SINE Alu -2 115 46 7 1372 471 18 0 0 chr3 103250880 103250936 -56348847 + (TTAGGG)n Simple_repeat Simple_repeat 2 57 0 7 1372 1967 97 6 124 chr3 103251040 103251404 -56348379 - ORR1A4 LTR MaLR -8 321 1 7 1372 574 86 21 11 chr3 103251422 103251516 -56348267 + (TTCC)n Simple_repeat Simple_repeat 2 96 0 7 1372 384 22 0 0 chr3 103253097 103253142 -56346641 + (TA)n Simple_repeat Simple_repeat 1 45 0 7 1372 195 42 0 0 chr3 103253656 103253680 -56346103 + (TG)n Simple_repeat Simple_repeat 1 24 0 7 1372 753 0 31 0 chr3 103253680 103253776 -56346007 + (GA)n Simple_repeat Simple_repeat 1 100 0 7 1372 522 158 55 0 chr3 103254268 103254432 -56345351 + (TA)n Simple_repeat Simple_repeat 1 173 0 7 1372 1073 212 5 5 chr3 103254433 103254641 -56345142 - B3 SINE B2 -8 208 1 7 1372 686 227 0 29 chr3 103255529 103255665 -56344118 + B1F2 SINE Alu 18 149 0 7 1372 279 292 231 39 chr3 103255906 103256109 -56343674 + MIRb SINE MIR 20 261 -7 7 1372 1140 277 207 13 chr3 103256367 103256765 -56343018 - Lx8 LINE L1 -25 7448 6974 7 1372 298 302 10 30 chr3 103257213 103257312 -56342471 + B1F SINE Alu 2 98 -51 7 1372 1570 189 161 75 chr3 103257316 103257807 -56341976 - MT2A LTR ERVL 0 533 1 7 1372 600 171 0 0 chr3 103258365 103258453 -56341330 - PB1D10 SINE Alu -11 106 19 7 1372 4152 249 205 23 chr3 103258512 103258690 -56341093 + Lx8 LINE L1 5542 5778 -1695 7 1372 234 0 0 0 chr3 103258690 103258716 -56341067 + (TAAAA)n Simple_repeat Simple_repeat 5 30 0 7 1372 4152 266 97 57 chr3 103258716 103259147 -56340636 + Lx8 LINE L1 5779 6195 -1278 7 1372 955 151 0 0 chr3 103259147 103259293 -56340490 + B1_Mur4 SINE Alu 5 150 0 7 1372 4152 266 97 57 chr3 103259293 103259985 -56339798 + Lx8 LINE L1 6196 6921 -552 7 1372 267 31 0 0 chr3 103259985 103260017 -56339766 + (TG)n Simple_repeat Simple_repeat 2 33 0 7 1372 4152 266 97 57 chr3 103260017 103260403 -56339380 + Lx8 LINE L1 6922 7329 -144 7 1372 309 281 14 89 chr3 103260486 103260692 -56339091 + L1MD LINE L1 5016 5213 -933 7 1372 216 97 0 0 chr3 103260834 103260865 -56338918 + (A)n Simple_repeat Simple_repeat 1 31 0 7 1372 623 248 38 20 chr3 103260865 103261092 -56338691 + L1MD LINE L1 5256 5489 -689 7 1372 379 186 192 20 chr3 103261177 103261276 -56338507 + PB1D9 SINE Alu 5 120 0 7 1372 253 247 37 49 chr3 103261299 103261380 -56338403 + LTR86A1 LTR ERVL 7 86 -427 7 1372 208 119 0 45 chr3 103261441 103261485 -56338298 + T-rich Low_complexity Low_complexity 2 43 0 7 1372 298 271 19 9 chr3 103261521 103261629 -56338154 + GA-rich Low_complexity Low_complexity 1 109 0 7 1372 385 333 154 6 chr3 103261629 103261798 -56337985 - MLT1G1 LTR MaLR -345 234 41 7 1372 468 0 0 0 chr3 103261798 103261850 -56337933 + (TG)n Simple_repeat Simple_repeat 2 53 0 7 1372 401 324 134 22 chr3 103261882 103262292 -56337491 + L2 LINE L2 1415 1870 -1549 7 1372 259 300 12 0 chr3 103262295 103262375 -56337408 + CT-rich Low_complexity Low_complexity 3 83 0 7 1372 790 224 46 17 chr3 103262539 103262712 -56337071 + MTEb LTR MaLR 2 179 -200 7 1372 2277 160 46 138 chr3 103262715 103263302 -56336481 + MT2A LTR ERVL 1 533 0 7 1372 219 228 70 0 chr3 103263402 103263459 -56336324 + L2 LINE L2 2285 2345 -1074 7 1372 649 218 37 110 chr3 103263464 103263655 -56336128 + MTEa LTR MaLR 201 377 -2 7 1372 2080 248 125 35 chr3 103263657 103264662 -56335121 + MTEa-int LTR MaLR 1 1578 -2 7 1372 659 270 20 106 chr3 103264664 103264863 -56334920 + MTEa LTR MaLR 198 379 0 7 1372 259 305 50 8 chr3 103264867 103264986 -56334797 + ERVL-E-int LTR ERVL 213 336 -5331 7 1372 1116 42 14 14 chr3 103265126 103265272 -56334511 + B1_Mus1 SINE Alu 3 148 0 7 1372 279 0 0 0 chr3 103265279 103265310 -56334473 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 7 1372 651 315 73 11 chr3 103265499 103265759 -56334024 + ERVL-E-int LTR ERVL 491 766 -4901 7 1372 184 227 90 15 chr3 103265810 103265877 -56333906 + L2 LINE L2 2285 2356 -1063 7 1372 251 327 70 23 chr3 103265983 103266155 -56333628 + L2 LINE L2 2637 2816 -603 7 1372 921 200 37 74 chr3 103266164 103266380 -56333403 + B3 SINE B2 9 216 0 7 1372 274 365 119 6 chr3 103266401 103266569 -56333214 + L2 LINE L2 2805 2991 -428 7 1372 186 171 0 0 chr3 103266993 103267034 -56332749 + G-rich Low_complexity Low_complexity 2 42 0 7 1372 2106 98 4 181 chr3 103267235 103267733 -56332050 + RMER17C LTR ERVK 1 410 0 7 1372 233 229 0 40 chr3 103268421 103268471 -56331312 + L2a LINE L2 3359 3406 -20 7 1372 281 333 61 15 chr3 103268730 103268861 -56330922 + L2b LINE L2 2757 2893 -526 7 1372 248 276 147 89 chr3 103268995 103269321 -56330462 + L2b LINE L2 3029 3373 -2 7 1372 191 297 98 9 chr3 103270705 103270817 -56328966 - MIR3 SINE MIR -2 206 85 7 1372 6515 149 31 1 chr3 103270974 103272056 -56327727 - L1_Mm LINE L1 -320 5563 4449 7 1372 8057 62 23 23 chr3 103272086 103273149 -56326634 + Lx LINE L1 5589 6651 -3 7 1372 296 24 0 24 chr3 103273429 103273471 -56326312 + (CAAAA)n Simple_repeat Simple_repeat 3 43 0 7 1372 335 340 73 7 chr3 103274146 103274297 -56325486 - MIRb SINE MIR -17 251 91 7 1372 804 198 4 128 chr3 103274557 103274783 -56325000 + B3A SINE B2 1 198 0 7 1372 675 230 0 0 chr3 103275648 103275813 -56323970 + (TATG)n Simple_repeat Simple_repeat 1 165 0 7 1372 492 296 68 6 chr3 103276252 103276415 -56323368 + MLT2B4 LTR ERVL 69 241 -315 7 1372 41 66 0 0 chr3 103277747 103277823 -56321960 + AT_rich Low_complexity Low_complexity 1 76 0 7 1372 1149 213 247 27 chr3 103278016 103278309 -56321474 - Lx7 LINE L1 0 7696 7307 7 1372 180 0 0 0 chr3 103278309 103278329 -56321454 + (TG)n Simple_repeat Simple_repeat 1 20 0 7 1372 1149 213 247 27 chr3 103278329 103278561 -56321222 - Lx7 LINE L1 -390 7306 7057 7 1372 479 0 49 0 chr3 103278852 103278913 -56320870 + (TTTTG)n Simple_repeat Simple_repeat 2 65 0 7 1372 916 19 0 0 chr3 103278916 103279023 -56320760 - B1_Mm SINE Alu -13 134 28 7 1372 999 193 59 10 chr3 103279183 103279387 -56320396 - B3 SINE B2 0 216 3 7 1372 441 42 27 14 chr3 103280169 103280242 -56319541 + (TA)n Simple_repeat Simple_repeat 2 75 0 7 1372 1998 180 77 0 chr3 103281243 103281609 -56318174 + MTD LTR MaLR 12 405 -14 7 1372 508 247 0 11 chr3 103282139 103282233 -56317550 - PB1D7 SINE Alu -2 118 26 7 1372 333 0 0 0 chr3 103282382 103282419 -56317364 + (TC)n Simple_repeat Simple_repeat 2 38 0 7 1372 369 0 0 0 chr3 103282419 103282459 -56317324 + (TG)n Simple_repeat Simple_repeat 2 42 0 7 1372 904 44 0 0 chr3 103282509 103282622 -56317161 + B1_Mus2 SINE Alu 35 147 0 7 1372 246 254 119 0 chr3 103282983 103283042 -56316741 + MLT1H LTR MaLR 484 549 0 7 1372 250 319 14 0 chr3 103283063 103283135 -56316648 + MIR SINE MIR 189 261 -1 7 1372 529 229 154 21 chr3 103283233 103283376 -56316407 + RSINE1 SINE B4 3 164 -1 7 1372 690 13 0 0 chr3 103283414 103283493 -56316290 + (GA)n Simple_repeat Simple_repeat 1 79 0 7 1372 697 254 97 23 chr3 103283815 103284073 -56315710 - L1ME4a LINE L1 -289 5835 5559 7 1372 229 316 57 32 chr3 103284112 103284269 -56315514 - L1MC5 LINE L1 -51 7910 7750 7 1373 484 269 124 31 chr3 103285325 103285486 -56314297 + B4A SINE B4 2 177 -115 7 1373 537 278 0 0 chr3 103285509 103285624 -56314159 + RSINE1 SINE B4 9 123 -42 7 1373 226 341 79 11 chr3 103285704 103285793 -56313990 + B4A SINE B4 192 286 -6 7 1373 450 243 0 0 chr3 103285819 103285959 -56313824 + (CA)n Simple_repeat Simple_repeat 1 140 0 7 1373 1962 72 0 48 chr3 103286349 103286639 -56313144 + L1Md_F2 LINE L1 6301 6576 -6 7 1373 245 268 0 0 chr3 103288181 103288252 -56311531 + A-rich Low_complexity Low_complexity 1 71 0 7 1373 1278 206 136 73 chr3 103288359 103288742 -56311041 - MTB_Mm LTR MaLR 0 407 1 7 1373 244 244 58 47 chr3 103289837 103289923 -56309860 - RLTR28 LTR ERVL -20 504 418 7 1373 197 284 118 15 chr3 103290148 103290216 -56309567 + MER5A DNA MER1_type 57 131 -58 7 1373 227 200 67 0 chr3 103290868 103290913 -56308870 - Zaphod2 DNA Tip100 -3476 48 1 7 1373 21 57 0 0 chr3 103290988 103291023 -56308760 + AT_rich Low_complexity Low_complexity 1 35 0 7 1373 504 0 0 0 chr3 103291040 103291096 -56308687 + (TG)n Simple_repeat Simple_repeat 2 57 0 7 1373 612 299 23 23 chr3 103291106 103291277 -56308506 - B3A SINE B2 -27 171 1 7 1373 537 356 71 51 chr3 103291723 103292075 -56307708 + ORR1E LTR MaLR 1 359 0 7 1373 432 300 33 19 chr3 103292094 103292256 -56307527 - B1F SINE Alu -10 301 8 8 1373 1167 87 0 0 chr3 103292281 103292431 -56307352 - B1_Mur4 SINE Alu 0 150 1 8 1373 314 339 166 29 chr3 103292516 103292829 -56306954 - L1MC LINE L1 -2095 5787 5432 8 1373 476 172 75 0 chr3 103292846 103292939 -56306844 + B3A SINE B2 1 100 -98 8 1373 324 70 0 0 chr3 103292963 103293006 -56306777 + (CA)n Simple_repeat Simple_repeat 2 44 0 8 1373 231 36 0 0 chr3 103294089 103294117 -56305666 + (TG)n Simple_repeat Simple_repeat 1 28 0 8 1373 328 212 235 17 chr3 103294877 103294992 -56304791 - B1F1 SINE Alu -3 146 7 8 1373 569 307 20 7 chr3 103295096 103295247 -56304536 + RSINE1 SINE B4 5 157 -8 8 1373 42 0 0 0 chr3 103295296 103295338 -56304445 + AT_rich Low_complexity Low_complexity 1 42 0 8 1373 2174 107 9 58 chr3 103295347 103295693 -56304090 - ORR1A4 LTR MaLR 0 329 1 8 1373 1409 289 137 78 chr3 103295745 103295789 -56303994 - Charlie1a DNA MER1_type -130 1325 1290 8 1373 1253 48 0 0 chr3 103295789 103295936 -56303847 + B1_Mus1 SINE Alu 2 148 0 8 1373 1409 289 137 78 chr3 103295936 103296892 -56302891 - Charlie1a DNA MER1_type -166 1289 266 8 1373 411 328 44 7 chr3 103296969 103297104 -56302679 - Charlie1a DNA MER1_type -1315 140 1 8 1373 841 173 40 35 chr3 103297227 103297319 -56302464 - RLTR24 LTR ERV1 0 529 434 8 1373 1160 59 0 0 chr3 103297319 103297472 -56302311 + L1Md_A LINE L1 6430 6582 0 8 1373 841 173 40 35 chr3 103297472 103297553 -56302230 - RLTR24 LTR ERV1 -96 433 355 8 1373 1823 149 64 12 chr3 103298018 103298364 -56301419 - RLTR24 LTR ERV1 -165 364 1 8 1373 821 299 75 52 chr3 103298718 103299064 -56300719 - MTD LTR MaLR -65 354 1 8 1373 414 294 71 8 chr3 103299381 103299508 -56300275 + Tigger5 DNA MER2_type 2 136 -2270 8 1373 679 248 29 23 chr3 103299658 103299818 -56299965 + B3A SINE B2 1 160 -56 8 1373 323 307 0 0 chr3 103299793 103299868 -56299915 - RMER30 DNA MER1_type -126 76 2 8 1373 322 327 84 0 chr3 103299882 103299989 -56299794 + Tigger5 DNA MER2_type 2291 2406 0 8 1373 277 314 30 31 chr3 103301144 103301324 -56298459 + L1ME3A LINE L1 5979 6160 -13 8 1373 334 303 0 0 chr3 103302027 103302103 -56297680 + B1F1 SINE Alu 4 79 -70 8 1373 480 294 48 74 chr3 103302342 103302704 -56297079 - MLT1A1 LTR MaLR 0 408 15 8 1373 244 264 141 34 chr3 103302747 103302854 -56296929 - MIRb SINE MIR -141 127 5 8 1373 396 103 0 0 chr3 103303285 103303343 -56296440 + (TTTCC)n Simple_repeat Simple_repeat 1 58 0 8 1373 480 18 0 0 chr3 103303355 103303412 -56296371 + (TTCC)n Simple_repeat Simple_repeat 2 58 0 8 1373 433 143 14 0 chr3 103303436 103303506 -56296277 - BC1_Mm scRNA scRNA -80 72 2 8 1373 483 274 26 9 chr3 103303514 103303628 -56296155 + B1_Mur1 SINE Alu 33 148 -1 8 1373 556 123 18 0 chr3 103303628 103303742 -56296041 + (GA)n Simple_repeat Simple_repeat 1 116 0 8 1373 225 0 0 0 chr3 103304112 103304137 -56295646 + (TTAA)n Simple_repeat Simple_repeat 3 27 0 8 1373 273 228 48 48 chr3 103304147 103304230 -56295553 - PB1D10 SINE Alu -8 109 27 8 1373 198 0 0 0 chr3 103304650 103304672 -56295111 + (T)n Simple_repeat Simple_repeat 1 22 0 8 1373 187 366 59 15 chr3 103305155 103305291 -56294492 + L2b LINE L2 3229 3370 -5 8 1373 431 351 22 22 chr3 103305450 103305587 -56294196 - B1F2 SINE Alu -3 146 10 8 1373 1049 196 25 37 chr3 103305831 103306075 -56293708 + RMER13B LTR ERVK 325 565 -343 8 1373 230 196 98 49 chr3 103306063 103306165 -56293618 + RMER13B LTR ERVK 798 904 -4 8 1373 281 238 150 0 chr3 103306169 103306249 -56293534 - B4 SINE B4 -3 289 198 8 1373 297 0 0 0 chr3 103306326 103306359 -56293424 + (TG)n Simple_repeat Simple_repeat 1 33 0 8 1373 545 274 172 42 chr3 103306387 103306625 -56293158 + MTD LTR MaLR 151 419 0 8 1373 354 300 128 41 chr3 103306625 103306842 -56292941 - B4A SINE B4 -55 237 2 8 1373 250 211 51 26 chr3 103306843 103306921 -56292862 - Zaphod DNA Tip100 -339 3692 3613 8 1373 380 269 106 11 chr3 103306925 103307019 -56292764 + B1_Mur1 SINE Alu 7 109 -40 8 1373 28 29 0 0 chr3 103307097 103307132 -56292651 + AT_rich Low_complexity Low_complexity 1 35 0 8 1373 215 93 23 0 chr3 103307169 103307212 -56292571 + (TTTTTG)n Simple_repeat Simple_repeat 4 47 0 8 1373 845 137 65 0 chr3 103307213 103307352 -56292431 - B1_Mur2 SINE Alu -1 148 1 8 1373 709 249 124 5 chr3 103307477 103307663 -56292120 - B3 SINE B2 -8 208 1 8 1373 338 219 48 24 chr3 103307720 103307804 -56291979 + PB1D10 SINE Alu 32 117 0 8 1373 432 251 139 36 chr3 103307909 103308103 -56291680 + MER20 DNA MER1_type 2 215 -4 8 1373 234 0 0 0 chr3 103308109 103308135 -56291648 + (CA)n Simple_repeat Simple_repeat 1 26 0 8 1373 936 336 129 36 chr3 103308180 103308621 -56291162 - Zaphod DNA Tip100 -3547 484 3 8 1373 33805 73 15 9 chr3 103309144 103314474 -56285309 + L1Md_F2 LINE L1 231 5585 -298 8 1373 7773 53 19 8 chr3 103314475 103315448 -56284335 + L1Md_F2 LINE L1 5587 6570 -12 8 1373 1296 119 92 24 chr3 103315529 103315736 -56284047 + URR1B DNA MER1_type 5 225 0 8 1373 950 294 55 46 chr3 103315736 103316061 -56283722 - MT2A LTR ERVL -16 517 190 8 1373 209 0 0 88 chr3 103316108 103316142 -56283641 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 8 1373 960 146 0 0 chr3 103316143 103316280 -56283503 - B1_Mur4 SINE Alu -13 137 1 8 1373 451 309 79 0 chr3 103316331 103316496 -56283287 - B3A SINE B2 -18 180 3 8 1373 267 114 0 0 chr3 103317084 103317128 -56282655 + (TTCA)n Simple_repeat Simple_repeat 1 44 0 8 1373 219 321 155 0 chr3 103317138 103317222 -56282561 - L2b LINE L2 -24 3351 3255 8 1373 437 360 105 39 chr3 103317510 103317871 -56281912 - L2b LINE L2 -586 2833 2449 8 1373 198 236 0 0 chr3 103317915 103317970 -56281813 + (CATA)n Simple_repeat Simple_repeat 4 58 0 8 1373 258 273 75 106 chr3 103318048 103318302 -56281481 - L2b LINE L2 -1285 2134 1889 8 1373 233 226 65 0 chr3 103318728 103318790 -56280993 - B3 SINE B2 0 216 151 8 1373 233 254 0 0 chr3 103322858 103322913 -56276870 + (CCA)n Simple_repeat Simple_repeat 3 57 0 8 1373 605 49 12 0 chr3 103322986 103323067 -56276716 + (TCCC)n Simple_repeat Simple_repeat 3 84 0 8 1373 275 71 24 0 chr3 103323932 103323974 -56275809 + (CCCCCT)n Simple_repeat Simple_repeat 2 44 0 8 1373 210 37 0 0 chr3 103324273 103324300 -56275483 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 8 1373 239 308 209 47 chr3 103324549 103324740 -56275043 - MLT1N2 LTR MaLR -48 514 293 8 1373 524 235 20 0 chr3 103325033 103325135 -56274648 - PB1D10 SINE Alu -11 106 3 8 1373 318 299 0 0 chr3 103325187 103325264 -56274519 + ID4 SINE ID 5 81 -2 8 1373 2319 94 3 81 chr3 103325291 103325648 -56274135 - ORR1A4 LTR MaLR 0 329 1 8 1373 28 79 0 0 chr3 103325664 103325727 -56274056 + AT_rich Low_complexity Low_complexity 1 63 0 8 1373 364 352 15 23 chr3 103325727 103325858 -56273925 - RSINE1 SINE B4 -33 132 3 8 1373 235 304 139 42 chr3 103326067 103326211 -56273572 + L3 LINE CR1 3279 3436 -1053 8 1373 491 316 96 73 chr3 103326215 103326529 -56273254 + MLT1J1 LTR MaLR 4 324 -120 8 1373 230 333 0 26 chr3 103327047 103327124 -56272659 + L3 LINE CR1 3559 3633 -856 8 1373 807 111 39 8 chr3 103327192 103327319 -56272464 - B1_Mur4 SINE Alu -9 141 11 8 1373 238 351 11 11 chr3 103327337 103327432 -56272351 - MIRb SINE MIR -23 245 151 8 1373 355 300 29 58 chr3 103327532 103327670 -56272113 + MER94 DNA AcHobo 1 134 0 8 1373 190 359 66 44 chr3 103327802 103327939 -56271844 + L3 LINE CR1 3852 3991 -498 8 1373 1158 287 73 13 chr3 103327940 103328254 -56271529 - ORR1E LTR MaLR -5 354 22 8 1373 996 273 109 14 chr3 103328298 103328721 -56271062 + L3 LINE CR1 4026 4488 -1 8 1373 257 316 10 59 chr3 103329268 103329369 -56270414 - MLT1K LTR MaLR -15 580 485 8 1373 260 259 85 81 chr3 103329371 103329578 -56270205 + MLT1B LTR MaLR 1 191 -199 8 1373 454 173 0 36 chr3 103329761 103329899 -56269884 + (CA)n Simple_repeat Simple_repeat 2 134 0 8 1373 234 259 43 77 chr3 103330056 103330173 -56269610 + MTE2a LTR MaLR 267 379 0 8 1373 995 184 44 48 chr3 103330766 103331070 -56268713 - RMER17B LTR ERVK -517 441 16 8 1373 733 293 72 54 chr3 103331514 103331792 -56267991 + RLTR20D LTR ERVK 1 283 -285 8 1373 397 144 254 26 chr3 103331782 103331837 -56267946 + RLTR20D LTR ERVK 423 479 -99 8 1373 798 21 0 0 chr3 103331837 103331933 -56267850 + (TG)n Simple_repeat Simple_repeat 2 97 0 8 1373 397 144 254 26 chr3 103331933 103331991 -56267792 + RLTR20D LTR ERVK 480 561 -17 8 1373 537 250 0 35 chr3 103332044 103332160 -56267623 - PB1D10 SINE Alu -5 112 1 8 1373 1278 24 156 0 chr3 103332259 103332426 -56267357 + B2_Mm1a SINE B2 1 193 0 8 1373 293 303 87 46 chr3 103332516 103332689 -56267094 + MIRb SINE MIR 20 199 -69 8 1373 818 298 45 15 chr3 103332692 103332958 -56266825 + B4A SINE B4 1 274 -18 8 1373 299 25 0 24 chr3 103332977 103333018 -56266765 + (CA)n Simple_repeat Simple_repeat 2 41 0 8 1373 211 304 152 0 chr3 103333265 103333357 -56266426 - L2a LINE L2 -2 3424 3319 8 1373 2875 62 69 3 chr3 103333539 103333914 -56265869 - MTB LTR MaLR 0 400 1 8 1373 6620 116 20 81 chr3 103333914 103335082 -56264701 - MTB-int LTR MaLR 0 1098 1 8 1373 3157 62 0 31 chr3 103335082 103335495 -56264288 - MTB LTR MaLR 0 400 1 8 1373 1023 190 38 0 chr3 103335610 103335794 -56263989 - B3 SINE B2 -24 192 2 8 1373 278 239 53 53 chr3 103335795 103335870 -56263913 + L2a LINE L2 3328 3402 -24 8 1373 249 33 0 0 chr3 103336424 103336454 -56263329 + (TG)n Simple_repeat Simple_repeat 1 30 0 8 1373 276 30 0 0 chr3 103336472 103336505 -56263278 + (CA)n Simple_repeat Simple_repeat 2 34 0 8 1373 446 305 55 0 chr3 103336552 103336680 -56263103 - B4A SINE B4 -157 135 1 8 1373 355 267 134 25 chr3 103336749 103336868 -56262915 - RSINE1 SINE B4 -22 143 12 8 1373 401 266 19 46 chr3 103338392 103338534 -56261249 - PB1D10 SINE Alu 0 149 1 8 1373 470 164 43 69 chr3 103338872 103338984 -56260799 - MTD LTR MaLR -308 113 1 8 1373 508 62 25 0 chr3 103339679 103339760 -56260023 + (TC)n Simple_repeat Simple_repeat 1 83 0 8 1373 644 279 69 54 chr3 103339999 103340276 -56259507 + B4A SINE B4 2 282 -10 8 1373 333 0 0 0 chr3 103340286 103340323 -56259460 + (CA)n Simple_repeat Simple_repeat 2 38 0 8 1373 189 183 50 0 chr3 103340406 103340466 -56259317 + GA-rich Low_complexity Low_complexity 1 63 0 8 1373 1990 171 106 3 chr3 103340744 103341113 -56258670 + MTD LTR MaLR 5 411 -8 8 1373 536 254 197 14 chr3 103341112 103341320 -56258463 + MT2A LTR ERVL 288 533 0 8 1373 1572 265 21 21 chr3 103343868 103344254 -56255529 - MTD LTR MaLR -31 388 3 9 1373 235 307 167 49 chr3 103344344 103344488 -56255295 - MIR3 SINE MIR -6 202 42 9 1373 1324 140 37 5 chr3 103344524 103344739 -56255044 - URR1A DNA MER1_type 0 226 5 9 1373 348 229 130 40 chr3 103345088 103345188 -56254595 - PB1D7 SINE Alu 0 120 12 9 1373 244 325 88 0 chr3 103345118 103345198 -56254585 - ID_B1 SINE B4 -55 169 83 9 1373 767 253 28 6 chr3 103345262 103345441 -56254342 - B3A SINE B2 -11 187 5 9 1373 2331 82 27 59 chr3 103345848 103346185 -56253598 - ORR1A3 LTR MaLR 0 326 1 9 1373 636 14 0 0 chr3 103347039 103347112 -56252671 + (TC)n Simple_repeat Simple_repeat 2 74 0 9 1373 600 103 28 0 chr3 103347555 103347662 -56252121 + (TTCC)n Simple_repeat Simple_repeat 2 111 0 9 1373 554 41 14 0 chr3 103347644 103347717 -56252066 + (TTC)n Simple_repeat Simple_repeat 3 76 0 9 1373 513 0 0 0 chr3 103347717 103347774 -56252009 + (TC)n Simple_repeat Simple_repeat 2 58 0 9 1373 316 315 128 23 chr3 103347804 103347937 -56251846 - B4A SINE B4 -18 274 128 9 1373 226 271 353 0 chr3 103347876 103347961 -56251822 - B1_Mur1 SINE Alu -34 115 1 9 1373 41 36 0 0 chr3 103347961 103348016 -56251767 + AT_rich Low_complexity Low_complexity 1 55 0 9 1373 1221 262 50 30 chr3 103348028 103348426 -56251357 - Lx8 LINE L1 -29 7444 7039 9 1373 2378 119 68 0 chr3 103348656 103349010 -56250773 + ORR1C1 LTR MaLR 1 378 0 9 1373 288 77 0 0 chr3 103349497 103349536 -56250247 + (TCCA)n Simple_repeat Simple_repeat 2 40 0 9 1373 855 232 81 111 chr3 103349708 103350105 -56249678 + MLT1B LTR MaLR 2 386 -4 9 1373 323 262 24 0 chr3 103351298 103351382 -56248401 - MER5A1 DNA MER1_type -25 141 56 9 1373 558 259 9 0 chr3 103351458 103351574 -56248209 + RSINE1 SINE B4 4 120 -45 9 1373 333 0 0 0 chr3 103351574 103351611 -56248172 + (CA)n Simple_repeat Simple_repeat 2 38 0 9 1373 267 31 0 0 chr3 103351633 103351665 -56248118 + (CAAT)n Simple_repeat Simple_repeat 1 32 0 9 1373 269 312 88 61 chr3 103351669 103351816 -56247967 + MER5B DNA MER1_type 28 178 0 9 1373 247 312 50 0 chr3 103351840 103351920 -56247863 - MLT1C LTR MaLR -8 459 376 9 1373 714 105 0 0 chr3 103351927 103352032 -56247751 + (CA)n Simple_repeat Simple_repeat 2 106 0 9 1373 186 43 0 0 chr3 103352560 103352583 -56247200 + (CAAAA)n Simple_repeat Simple_repeat 1 23 0 9 1373 823 280 153 59 chr3 103352658 103353201 -56246582 + Charlie7 DNA MER1_type 59 652 -1960 9 1373 469 350 38 63 chr3 103353350 103353588 -56246195 + B4A SINE B4 41 272 -20 9 1373 225 83 0 0 chr3 103353681 103353717 -56246066 + (TTTTG)n Simple_repeat Simple_repeat 3 38 0 9 1373 768 165 63 0 chr3 103353718 103353845 -56245938 - B1_Mus2 SINE Alu -1 146 12 9 1373 298 235 69 121 chr3 103353752 103353868 -56245915 - MT2B LTR ERVL -337 264 155 9 1373 24 0 0 0 chr3 103353868 103353892 -56245891 + AT_rich Low_complexity Low_complexity 1 24 0 9 1373 782 276 22 0 chr3 103353966 103354151 -56245632 - B3A SINE B2 -8 190 2 9 1373 187 319 121 21 chr3 103354831 103354972 -56244811 + L2b LINE L2 3220 3374 -1 9 1373 548 224 87 8 chr3 103355172 103355298 -56244485 + RSINE1 SINE B4 1 136 -29 9 1373 289 283 221 5 chr3 103355643 103355856 -56243927 + L3 LINE CR1 4102 4360 -129 9 1373 182 293 129 20 chr3 103355889 103355990 -56243793 + MIR SINE MIR 16 127 -81 9 1373 335 105 0 17 chr3 103356882 103356940 -56242843 + (TCCC)n Simple_repeat Simple_repeat 3 59 0 9 1373 441 0 0 0 chr3 103356940 103356989 -56242794 + (TG)n Simple_repeat Simple_repeat 1 49 0 9 1373 657 226 42 42 chr3 103356990 103357133 -56242650 - RSINE1 SINE B4 -22 143 1 9 1373 1354 319 135 22 chr3 103357675 103358567 -56241216 + L2a LINE L2 964 1926 -1493 9 1373 486 0 0 0 chr3 103358567 103358621 -56241162 + (TC)n Simple_repeat Simple_repeat 1 54 0 9 1373 1354 319 135 22 chr3 103358621 103358896 -56240887 + L2a LINE L2 1927 2262 -1157 9 1373 759 327 80 15 chr3 103358896 103358943 -56240840 - MLT1A0 LTR MaLR -18 347 301 9 1373 3449 38 2 0 chr3 103358943 103359338 -56240445 - MTA_Mm LTR MaLR 0 396 1 9 1373 9319 32 4 2 chr3 103359338 103360434 -56239349 - MTA_Mm-int LTR MaLR 0 1098 1 9 1373 3437 38 2 0 chr3 103360434 103360829 -56238954 - MTA_Mm LTR MaLR 0 396 1 9 1373 759 327 80 15 chr3 103360829 103361105 -56238678 - MLT1A0 LTR MaLR -65 300 3 9 1373 431 302 48 108 chr3 103361105 103361153 -56238630 + L2a LINE L2 2282 2323 -1096 9 1373 498 234 45 0 chr3 103361153 103361264 -56238519 + PB1D10 SINE Alu 2 117 0 9 1373 431 302 48 108 chr3 103361264 103361594 -56238189 + L2a LINE L2 2324 2637 -782 9 1373 245 180 20 0 chr3 103361602 103361652 -56238131 - Lx9 LINE L1 -389 7255 7205 9 1373 627 215 78 88 chr3 103361652 103361823 -56237960 + Lx9 LINE L1 7264 7433 -211 9 1373 1137 128 0 0 chr3 103361823 103362003 -56237780 + (TG)n Simple_repeat Simple_repeat 1 180 0 9 1373 627 215 78 88 chr3 103362003 103362035 -56237748 + Lx9 LINE L1 7434 7465 -179 9 1373 239 54 0 26 chr3 103362038 103362076 -56237707 + (TA)n Simple_repeat Simple_repeat 1 37 0 9 1373 2347 110 152 5 chr3 103362076 103362478 -56237305 - ORR1B2-int LTR MaLR -150 1359 899 9 1373 576 105 53 0 chr3 103362472 103362567 -56237216 - ORR1B2 LTR MaLR -267 100 1 9 1373 1471 163 110 7 chr3 103362567 103362624 -56237159 - ORR1D1 LTR MaLR -74 300 239 9 1373 234 0 0 0 chr3 103362624 103362650 -56237133 + (CAGG)n Simple_repeat Simple_repeat 1 26 0 9 1373 1471 163 110 7 chr3 103362650 103362864 -56236919 - ORR1D1 LTR MaLR -136 238 2 9 1373 291 257 0 54 chr3 103363219 103363293 -56236490 - PB1D10 SINE Alu 0 117 48 9 1373 233 270 63 0 chr3 103363255 103363318 -56236465 - 4.5SRNA scRNA scRNA -11 83 17 9 1373 267 233 14 89 chr3 103363491 103363637 -56236146 - MER4B-int LTR ERV1 -4573 2185 2051 9 1373 315 104 0 0 chr3 103364265 103364313 -56235470 + (CAGAA)n Simple_repeat Simple_repeat 1 48 0 9 1373 263 286 0 91 chr3 103364462 103364508 -56235275 - ID_B1 SINE B4 -66 158 117 9 1373 2194 112 12 36 chr3 103364508 103364842 -56234941 - ORR1A3 LTR MaLR 0 326 1 9 1373 263 286 0 91 chr3 103364842 103364872 -56234911 - ID_B1 SINE B4 -108 116 89 9 1373 203 333 90 10 chr3 103364876 103364976 -56234807 + L2a LINE L2 2808 2915 -504 9 1373 304 289 80 86 chr3 103364976 103365139 -56234644 + MER3 DNA MER1_type 1 162 -47 9 1373 414 289 110 27 chr3 103365133 103365215 -56234568 - RSINE1 SINE B4 -6 159 71 9 1373 195 69 0 0 chr3 103365215 103365244 -56234539 + (TGG)n Simple_repeat Simple_repeat 1 29 0 9 1373 414 289 110 27 chr3 103365244 103365307 -56234476 - RSINE1 SINE B4 -95 70 4 9 1373 872 226 35 15 chr3 103365335 103365537 -56234246 - B3 SINE B2 0 216 11 9 1373 269 197 98 0 chr3 103365554 103365615 -56234168 + MER3 DNA MER1_type 143 209 0 9 1373 211 111 28 0 chr3 103365768 103365804 -56233979 + (TG)n Simple_repeat Simple_repeat 1 37 0 9 1373 565 244 48 66 chr3 103365804 103365971 -56233812 - RSINE1 SINE B4 0 165 2 9 1373 289 348 64 13 chr3 103365971 103366128 -56233655 + L2a LINE L2 2957 3121 -305 9 1373 465 19 0 0 chr3 103367134 103367188 -56232595 + (TC)n Simple_repeat Simple_repeat 2 55 0 9 1373 306 0 0 0 chr3 103367188 103367221 -56232562 + (TG)n Simple_repeat Simple_repeat 1 34 0 9 1373 629 278 54 72 chr3 103367258 103367537 -56232246 - B4A SINE B4 -18 274 1 9 1373 978 298 25 21 chr3 103367978 103368259 -56231524 + B4A SINE B4 9 290 -2 9 1373 213 121 0 0 chr3 103368297 103368330 -56231453 + (CA)n Simple_repeat Simple_repeat 1 33 0 9 1373 404 345 97 40 chr3 103368343 103368693 -56231090 + L1MC5 LINE L1 7568 7937 -24 9 1373 284 269 244 0 chr3 103369382 103369501 -56230282 - MIRb SINE MIR -9 259 112 9 1373 189 0 0 0 chr3 103371047 103371068 -56228715 + (TGGGGG)n Simple_repeat Simple_repeat 2 22 0 9 1373 217 316 18 3 chr3 103372899 103372988 -56226795 - MIR SINE MIR -92 176 83 9 1373 592 274 39 0 chr3 103373855 103374008 -56225775 - RSINE1 SINE B4 -4 161 3 9 1373 464 216 167 0 chr3 103374040 103374142 -56225641 + ID_B1 SINE B4 83 201 -23 9 1373 235 312 46 42 chr3 103374587 103374804 -56224979 + RMER17A LTR ERVK 288 505 -246 9 1373 200 160 59 20 chr3 103376998 103377049 -56222734 + (TCTCTG)n Simple_repeat Simple_repeat 5 57 0 9 1373 217 0 61 0 chr3 103377362 103377395 -56222388 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 9 1373 274 270 184 28 chr3 103378862 103379003 -56220780 - MIRc SINE MIR -18 250 88 9 1373 510 17 0 0 chr3 103381017 103381076 -56218707 + (TC)n Simple_repeat Simple_repeat 2 60 0 9 1373 434 203 0 0 chr3 103382700 103382774 -56217009 - PB1D7 SINE Alu -6 114 41 9 1373 323 226 7 163 chr3 103383151 103383204 -56216579 - RLTR25B LTR ERVK -459 569 524 9 1373 243 0 0 0 chr3 103383204 103383231 -56216552 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 9 1373 323 226 7 163 chr3 103383231 103383330 -56216453 - RLTR25B LTR ERVK -505 523 441 9 1373 1028 110 0 0 chr3 103383330 103383367 -56216416 - B1_Mus1 SINE Alu -9 139 4 9 1373 207 100 0 0 chr3 103383596 103383626 -56216157 + (TAA)n Simple_repeat Simple_repeat 1 30 0 9 1373 498 33 0 0 chr3 103384018 103384078 -56215705 + (TC)n Simple_repeat Simple_repeat 1 60 0 9 1373 309 26 0 0 chr3 103384078 103384115 -56215668 + (CA)n Simple_repeat Simple_repeat 1 38 0 9 1373 311 289 126 48 chr3 103384391 103384598 -56215185 + MIR SINE MIR 40 262 0 9 1373 236 210 0 0 chr3 103385413 103385462 -56214321 - MIRc SINE MIR -63 205 147 9 1373 263 215 273 15 chr3 103387283 103387349 -56212434 - URR1A DNA MER1_type -143 83 1 9 1373 224 259 157 26 chr3 103387787 103387902 -56211881 + MIR3 SINE MIR 15 144 -64 9 1373 296 267 0 0 chr3 103388762 103388822 -56210961 + ID4 SINE ID 1 60 -23 9 1373 234 329 55 9 chr3 103389899 103390017 -56209766 - L2c LINE L2 -290 3097 2976 9 1373 237 293 92 85 chr3 103390285 103390500 -56209283 + MIRb SINE MIR 20 236 -32 9 1373 384 287 249 0 chr3 103390500 103390681 -56209102 - MIR SINE MIR -36 226 1 9 1373 435 83 0 0 chr3 103390711 103390771 -56209012 + (TGG)n Simple_repeat Simple_repeat 3 62 0 9 1373 349 312 21 0 chr3 103390897 103390993 -56208790 - MIR SINE MIR 0 262 165 9 1373 446 49 0 16 chr3 103391882 103391944 -56207839 + (GGGA)n Simple_repeat Simple_repeat 4 64 0 9 1373 917 330 50 25 chr3 103392130 103392490 -56207293 - MLT1I LTR MaLR 0 411 43 9 1373 26 30 0 0 chr3 103392647 103392680 -56207103 + AT_rich Low_complexity Low_complexity 1 33 0 9 1373 585 271 95 105 chr3 103392703 103392893 -56206890 - B3A SINE B2 -9 189 2 9 1373 1609 182 102 16 chr3 103394646 103394969 -56204814 - MTD LTR MaLR 0 419 69 1 1373 3104 48 3 18 chr3 103394987 103395372 -56204411 - L1_Mus2 LINE L1 0 6566 6188 1 1373 574 105 12 0 chr3 103395375 103395461 -56204322 + 4.5SRNA scRNA scRNA 8 94 0 1 1373 362 289 33 0 chr3 103395436 103395526 -56204257 - MTD LTR MaLR -326 93 1 1 1373 423 0 0 0 chr3 103396795 103396842 -56202941 + (TG)n Simple_repeat Simple_repeat 1 47 0 1 1373 306 0 0 0 chr3 103396842 103396875 -56202908 + (GA)n Simple_repeat Simple_repeat 1 34 0 1 1373 1347 269 106 2 chr3 103397329 103397727 -56202056 - MER44B DNA MER2_type -105 445 7 1 1373 189 0 0 0 chr3 103397778 103397799 -56201984 + (A)n Simple_repeat Simple_repeat 1 21 0 1 1373 1075 63 0 40 chr3 103398820 103398961 -56200822 + B1_Mus1 SINE Alu 2 137 -11 1 1373 352 0 20 20 chr3 103398961 103399010 -56200773 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 1 1373 627 257 7 13 chr3 103399943 103400093 -56199690 - B1F1 SINE Alu 0 149 1 1 1373 596 308 118 19 chr3 103400093 103400407 -56199376 - L2 LINE L2 -783 2636 2292 1 1373 513 0 0 0 chr3 103400864 103400921 -56198862 + (CCCTG)n Simple_repeat Simple_repeat 5 61 0 1 1373 270 176 0 0 chr3 103401249 103401300 -56198483 + (TA)n Simple_repeat Simple_repeat 1 51 0 1 1373 405 339 115 0 chr3 103401505 103401679 -56198104 - MamSINE1 SINE tRNA -54 236 43 1 1373 326 340 92 6 chr3 103402427 103402590 -56197193 - MIR3 SINE MIR -15 193 17 1 1373 668 74 11 0 chr3 103405558 103405653 -56194130 + (TC)n Simple_repeat Simple_repeat 1 96 0 1 1373 473 272 46 39 chr3 103406699 103406829 -56192954 - B1F SINE Alu -18 131 1 1 1373 206 250 21 0 chr3 103406917 103406965 -56192818 + GA-rich Low_complexity Low_complexity 3 51 0 1 1373 180 0 0 0 chr3 103407125 103407145 -56192638 + (A)n Simple_repeat Simple_repeat 1 20 0 1 1373 462 250 50 0 chr3 103407158 103407258 -56192525 + B3A SINE B2 3 107 -91 1 1373 404 37 0 18 chr3 103407270 103407325 -56192458 + (CA)n Simple_repeat Simple_repeat 1 54 0 1 1373 314 111 330 18 chr3 103407644 103407753 -56192030 - B2_Mm2 SINE B2 -1 194 52 1 1373 1076 65 156 0 chr3 103407802 103407956 -56191827 - B2_Mm1t SINE B2 -14 179 2 1 1373 260 328 115 25 chr3 103408121 103408243 -56191540 - MIRc SINE MIR -26 242 110 1 1373 252 308 74 15 chr3 103408437 103408572 -56191211 - L4 LINE RTE -184 1845 1703 1 1373 276 229 0 10 chr3 103408643 103408713 -56191070 + MIRc SINE MIR 108 177 -91 1 1373 180 0 0 0 chr3 103408746 103408766 -56191017 + (CAAAAA)n Simple_repeat Simple_repeat 4 23 0 1 1373 397 304 13 86 chr3 103408786 103408937 -56190846 + B1F1 SINE Alu 9 148 -1 1 1373 578 244 37 49 chr3 103409048 103409212 -56190571 - RSINE1 SINE B4 -1 164 3 1 1373 302 203 53 0 chr3 103409223 103409304 -56190479 - B1_Mur2 SINE Alu -42 107 19 1 1373 607 227 94 0 chr3 103411650 103411778 -56188005 + ID_B1 SINE B4 84 223 -1 1 1373 1086 167 36 27 chr3 103413041 103413262 -56186521 + URR1B DNA MER1_type 1 223 -2 1 1373 182 316 17 17 chr3 103413748 103413806 -56185977 - MER5B DNA MER1_type -62 116 59 1 1373 243 0 0 0 chr3 103413866 103413893 -56185890 + (TG)n Simple_repeat Simple_repeat 1 27 0 1 1373 378 0 0 0 chr3 103413893 103413934 -56185849 + (GA)n Simple_repeat Simple_repeat 1 42 0 1 1373 561 269 18 53 chr3 103413946 103414115 -56185668 - RSINE1 SINE B4 0 165 3 1 1373 298 241 0 17 chr3 103414219 103414278 -56185505 - ID4 SINE ID -23 60 3 1 1373 226 236 0 68 chr3 103414361 103414420 -56185363 - L2a LINE L2 -37 3389 3335 1 1373 186 259 37 0 chr3 103414564 103414618 -56185165 - L2a LINE L2 -312 3075 3020 1 1373 631 258 196 79 chr3 103414723 103415039 -56184744 - ORR1E LTR MaLR -6 353 1 1 1373 215 261 93 59 chr3 103415042 103415160 -56184623 - L2a LINE L2 -558 2861 2740 1 1373 1098 161 101 19 chr3 103415462 103415671 -56184112 - URR1A DNA MER1_type 0 226 1 1 1374 414 94 0 0 chr3 103417569 103417633 -56182150 + (TG)n Simple_repeat Simple_repeat 1 64 0 1 1374 1267 238 58 23 chr3 103417645 103417954 -56181829 + MTE2a LTR MaLR 58 377 -2 1 1374 271 339 92 40 chr3 103419192 103419496 -56180287 + L2c LINE L2 2920 3239 -148 1 1374 498 233 16 55 chr3 103419565 103419692 -56180091 - MIRb SINE MIR 0 262 141 1 1374 221 330 43 32 chr3 103419705 103419799 -56179984 - MIRb SINE MIR -163 105 11 1 1374 223 390 47 9 chr3 103419780 103419886 -56179897 - L2b LINE L2 -29 3346 3237 1 1374 409 348 64 14 chr3 103420575 103420715 -56179068 - MIR3 SINE MIR -43 165 19 1 1374 198 0 0 0 chr3 103420749 103420771 -56179012 + (CCA)n Simple_repeat Simple_repeat 1 22 0 1 1374 214 351 25 0 chr3 103422604 103422693 -56177090 + MIRc SINE MIR 72 162 -100 1 1374 992 196 32 21 chr3 103423191 103423379 -56176404 + B3 SINE B2 3 192 -24 1 1374 198 0 0 0 chr3 103423379 103423401 -56176382 + (TAAA)n Simple_repeat Simple_repeat 4 25 0 1 1374 182 171 24 0 chr3 103423407 103423448 -56176335 + GA-rich Low_complexity Low_complexity 2 43 0 1 1374 291 298 63 95 chr3 103423547 103423736 -56176047 + L2c LINE L2 3205 3387 0 1 1374 222 171 0 0 chr3 103424555 103424596 -56175187 + GA-rich Low_complexity Low_complexity 2 42 0 1 1374 239 235 0 0 chr3 103425614 103425665 -56174118 + (TG)n Simple_repeat Simple_repeat 1 51 0 1 1374 690 55 0 0 chr3 103426113 103426204 -56173579 + (CA)n Simple_repeat Simple_repeat 2 92 0 1 1374 205 318 16 0 chr3 103426659 103426722 -56173061 + L2a LINE L2 3363 3426 0 1 1374 237 271 107 33 chr3 103427167 103427289 -56172494 + MIR SINE MIR 95 225 -37 1 1374 452 216 86 29 chr3 103429252 103429357 -56170426 + PB1D7 SINE Alu 10 120 0 1 1374 623 246 62 52 chr3 103430505 103430698 -56169085 - B2_Mm2 SINE B2 0 195 1 1 1374 806 289 58 14 chr3 103431271 103431478 -56168305 + ID_B1 SINE B4 1 216 -8 1 1374 369 0 0 0 chr3 103431479 103431520 -56168263 + (GAAA)n Simple_repeat Simple_repeat 4 44 0 1 1374 729 34 0 0 chr3 103431521 103431609 -56168174 + (GGAAA)n Simple_repeat Simple_repeat 4 91 0 1 1374 1133 96 0 0 chr3 103433742 103433888 -56165895 + B1_Mus2 SINE Alu 2 147 0 1 1374 254 265 170 50 chr3 103435001 103435160 -56164623 + LTR80A LTR ERVL 389 566 -17 1 1374 324 0 0 0 chr3 103436108 103436144 -56163639 + (CA)n Simple_repeat Simple_repeat 2 37 0 1 1374 633 338 73 11 chr3 103439764 103440036 -56159747 - MLT1I LTR MaLR -3 408 120 1 1374 1559 268 83 23 chr3 103440818 103441527 -56158256 - L1MB3 LINE L1 -1 6182 5431 1 1374 234 0 0 0 chr3 103441529 103441555 -56158228 + (CTAA)n Simple_repeat Simple_repeat 2 27 0 1 1374 831 256 70 20 chr3 103441556 103441755 -56158028 - ID_B1 SINE B4 -10 214 6 1 1374 1017 222 146 10 chr3 103441755 103441960 -56157823 - L1MB3 LINE L1 -743 5437 5200 1 1374 276 266 30 102 chr3 103441960 103442157 -56157626 - B3A SINE B2 -15 183 1 1 1374 1017 272 179 33 chr3 103442157 103442598 -56157185 - L1MB3 LINE L1 -947 5199 4674 1 1374 337 280 0 0 chr3 103442598 103442673 -56157110 + ID4 SINE ID 5 79 -4 1 1374 1017 272 179 33 chr3 103442673 103442800 -56156983 - L1MB3 LINE L1 -1473 4673 4554 1 1374 781 276 222 23 chr3 103442890 103443287 -56156496 - RMER20B LTR ERVK -23 604 129 1 1374 426 287 75 27 chr3 103445047 103445194 -56154589 + MLT1A0 LTR MaLR 210 363 -2 1 1374 519 17 0 0 chr3 103445665 103445725 -56154058 + (TG)n Simple_repeat Simple_repeat 2 61 0 1 1374 255 281 10 59 chr3 103445963 103446065 -56153718 + B3A SINE B2 16 112 -86 1 1374 257 341 36 24 chr3 103446110 103446194 -56153589 + B4A SINE B4 196 280 -12 1 1374 456 140 0 0 chr3 103446236 103446329 -56153454 + (TC)n Simple_repeat Simple_repeat 2 94 0 1 1374 471 16 0 62 chr3 103447648 103447663 -56152120 + L1Md_T LINE L1 5625 5636 -946 1 1374 999 62 0 20 chr3 103447663 103447810 -56151973 - L1Md_F2 LINE L1 -2 6580 6437 1 1374 471 16 0 62 chr3 103447810 103447859 -56151924 + L1Md_T LINE L1 5637 5685 -897 1 1374 26 50 0 0 chr3 103447859 103447899 -56151884 + AT_rich Low_complexity Low_complexity 1 40 0 1 1374 733 239 125 0 chr3 103447940 103448116 -56151667 + MER58A DNA MER1_type 27 224 0 1 1374 3161 40 0 0 chr3 103449992 103450370 -56149413 + L1Md_F2 LINE L1 5671 6048 -534 1 1374 533 118 0 97 chr3 103452315 103452418 -56147365 - URR1B DNA MER1_type -7 218 126 1 1374 228 321 37 28 chr3 103452750 103452859 -56146924 + MLT1A1 LTR MaLR 1 110 -298 1 1374 263 278 99 38 chr3 103452922 103453053 -56146730 + MLT1A1 LTR MaLR 268 406 -2 1 1374 265 292 0 15 chr3 103453222 103453288 -56146495 + MIRm SINE MIR 209 273 -3 1 1374 269 321 66 78 chr3 103453509 103453766 -56146017 - MIRb SINE MIR 0 268 15 1 1374 4517 52 9 7 chr3 103454857 103455416 -56144367 - LTRIS2 LTR ERV1 0 564 5 1 1374 255 256 299 16 chr3 103455805 103455932 -56143851 - MER103 DNA DNA -1 165 3 1 1374 253 334 39 64 chr3 103456278 103456458 -56143325 + MIRc SINE MIR 45 217 -51 1 1374 2117 21 0 0 chr3 103456522 103456764 -56143019 + L1_Mus1 LINE L1 6324 6565 -2 1 1374 1579 174 150 140 chr3 103458634 103459162 -56140621 - MT2A LTR ERVL 0 533 1 1 1374 269 389 47 16 chr3 103459493 103459621 -56140162 - MLT1M LTR MaLR -405 267 136 1 1374 482 333 128 31 chr3 103459752 103460167 -56139616 + L2 LINE L2 2408 2862 -557 1 1374 519 176 87 10 chr3 103460333 103460436 -56139347 + ID_B1 SINE B4 114 224 0 1 1374 3554 38 86 0 chr3 103460808 103461252 -56138531 + RLTR45 LTR ERVK 1 482 0 1 1374 246 317 0 56 chr3 103462420 103462527 -56137256 + MER21B LTR ERV1 1 101 -762 1 1374 870 306 77 39 chr3 103462981 103463302 -56136481 + MER21B LTR ERV1 273 608 -255 1 1374 4628 83 2 3 chr3 103463302 103463918 -56135865 + L1_Mus4 LINE L1 6022 6636 0 1 1374 870 306 77 39 chr3 103463918 103463932 -56135851 + MER21B LTR ERV1 609 621 -242 1 1374 616 313 20 15 chr3 103463999 103464200 -56135583 + MER21B LTR ERV1 612 813 -50 1 1374 361 197 0 16 chr3 103464330 103464392 -56135391 + B3A SINE B2 5 65 -133 1 1374 225 0 0 0 chr3 103464530 103464555 -56135228 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 1 1374 437 294 10 10 chr3 103464864 103464967 -56134816 + U13_ snRNA snRNA 4 106 -2 1 1374 432 0 0 0 chr3 103465523 103465571 -56134212 + (TG)n Simple_repeat Simple_repeat 2 49 0 1 1374 655 200 22 15 chr3 103465577 103465714 -56134069 - B3A SINE B2 -60 138 1 1 1374 298 384 56 6 chr3 103465715 103465893 -56133890 + LTR78 LTR ERV1 1078 1264 -40 1 1374 739 240 74 15 chr3 103466495 103466698 -56133085 + B3 SINE B2 2 216 0 1 1374 228 237 26 6 chr3 103467053 103467126 -56132657 - MIR SINE MIR -168 100 26 1 1374 2285 161 71 0 chr3 103467827 103468219 -56131564 - MTC LTR MaLR 0 421 2 1 1374 267 31 0 0 chr3 103468306 103468338 -56131445 + (CA)n Simple_repeat Simple_repeat 2 33 0 1 1374 333 0 0 0 chr3 103468517 103468554 -56131229 + (CA)n Simple_repeat Simple_repeat 1 37 0 1 1374 332 282 47 0 chr3 103469146 103469231 -56130552 + BC1_Mm scRNA scRNA 14 102 -50 1 1374 666 245 35 40 chr3 103469327 103469527 -56130256 + LTR81B LTR ERV1? 1 199 -1194 1 1374 401 272 189 30 chr3 103469577 103469722 -56130061 + MIR SINE MIR 16 193 -69 1 1374 1180 57 0 0 chr3 103469722 103469863 -56129920 + B1_Mus1 SINE Alu 1 141 -7 1 1374 401 272 189 30 chr3 103469863 103469918 -56129865 + MIR SINE MIR 194 248 -14 1 1374 573 249 286 26 chr3 103470132 103470363 -56129420 + MTE2b LTR MaLR 87 377 -2 1 1374 281 189 52 58 chr3 103470478 103470652 -56129131 + (CATA)n Simple_repeat Simple_repeat 2 174 0 1 1374 333 0 0 0 chr3 103470783 103470820 -56128963 + (CA)n Simple_repeat Simple_repeat 1 37 0 1 1374 824 287 134 82 chr3 103471645 103472324 -56127459 + Charlie20a DNA Charlie 78 791 -16 1 1374 1384 263 67 86 chr3 103472508 103473044 -56126739 + MT2A LTR ERVL 8 533 0 1 1374 240 111 0 0 chr3 103473620 103473656 -56126127 + (TCTG)n Simple_repeat Simple_repeat 3 38 0 1 1374 702 275 26 52 chr3 103473961 103473978 -56125805 - ID_B1 SINE B4 0 224 208 1 1374 351 0 0 0 chr3 103473978 103474017 -56125766 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 1374 702 275 26 52 chr3 103474017 103474229 -56125554 - ID_B1 SINE B4 -17 207 1 1 1374 733 290 84 78 chr3 103474508 103474841 -56124942 - ORR1E LTR MaLR -6 353 19 1 1374 406 257 124 0 chr3 103474842 103474947 -56124836 + RSINE1 SINE B4 2 119 -46 1 1374 396 0 0 0 chr3 103474956 103475000 -56124783 + (CA)n Simple_repeat Simple_repeat 2 45 0 1 1374 216 0 0 0 chr3 103475014 103475038 -56124745 + (CCA)n Simple_repeat Simple_repeat 1 24 0 1 1374 2178 196 27 7 chr3 103475132 103475543 -56124240 + MTD LTR MaLR 1 419 0 1 1374 565 318 77 63 chr3 103475765 103476192 -56123591 - L2 LINE L2 -654 2765 2333 1 1374 384 281 37 35 chr3 103476644 103476792 -56122991 + MIRc SINE MIR 69 210 -52 1 1374 245 279 54 71 chr3 103477086 103477198 -56122585 - LTR16E1 LTR ERVL -189 349 240 1 1374 276 301 147 22 chr3 103477420 103477556 -56122227 + MLT1A1 LTR MaLR 1 153 -255 1 1374 315 49 0 0 chr3 103477611 103477652 -56122131 + (CA)n Simple_repeat Simple_repeat 1 41 0 1 1374 2845 198 26 12 chr3 103477980 103478480 -56121303 - RLTR18B LTR ERVK -5 507 1 1 1374 273 342 67 36 chr3 103478480 103478644 -56121139 + MLT1A1 LTR MaLR 188 357 -315 1 1374 321 275 49 29 chr3 103479089 103479216 -56120567 + PB1D7 SINE Alu 1 127 0 1 1374 945 127 0 0 chr3 103479608 103479765 -56120018 + (TGGA)n Simple_repeat Simple_repeat 1 157 0 1 1374 399 353 66 35 chr3 103480082 103480279 -56119504 - MLT1F1 LTR MaLR -343 226 24 1 1374 593 226 42 42 chr3 103480280 103480423 -56119360 + B1_Mur1 SINE Alu 1 143 -6 1 1374 562 227 0 0 chr3 103480923 103481033 -56118750 - PB1D10 SINE Alu -7 110 1 1 1374 270 336 171 0 chr3 103481159 103481305 -56118478 + L2b LINE L2 2691 2861 -558 1 1374 193 344 28 79 chr3 103481357 103481572 -56118211 + L2b LINE L2 2978 3181 -194 1 1374 2328 55 0 27 chr3 103482183 103482483 -56117300 + L1_Mus1 LINE L1 6276 6567 0 1 1374 331 229 14 14 chr3 103482499 103482570 -56117213 + ID4_ SINE ID 3 73 -10 1 1374 241 292 77 0 chr3 103482799 103482864 -56116919 - MTEb LTR MaLR 0 379 310 1 1374 216 0 0 0 chr3 103483338 103483362 -56116421 + (CAGA)n Simple_repeat Simple_repeat 4 27 0 1 1374 866 162 247 6 chr3 103483438 103483612 -56116171 - B3 SINE B2 0 216 1 1 1374 337 328 92 24 chr3 103484474 103484680 -56115103 - RMER5 LTR ERV1 -247 287 68 1 1374 357 297 33 0 chr3 103484892 103484983 -56114800 - B1F1 SINE Alu -47 102 9 1 1374 200 275 196 11 chr3 103485014 103485106 -56114677 + MIR SINE MIR 153 261 -1 1 1374 1775 181 70 22 chr3 103485219 103485575 -56114208 - ORR1D1 LTR MaLR -1 373 1 1 1374 1673 230 48 3 chr3 103485597 103485954 -56113829 - MTEa LTR MaLR -3 376 4 1 1374 887 327 143 26 chr3 103488260 103488728 -56111055 - MER74A LTR ERVL 0 558 36 1 1374 273 143 10 58 chr3 103489049 103489153 -56110630 + (CACCC)n Simple_repeat Simple_repeat 1 99 0 1 1374 825 197 0 0 chr3 103489565 103489821 -56109962 + (CA)n Simple_repeat Simple_repeat 1 256 0 1 1374 552 206 0 0 chr3 103489834 103489980 -56109803 + (CA)n Simple_repeat Simple_repeat 2 147 0 1 1374 455 285 14 42 chr3 103489995 103490138 -56109645 + MIR3 SINE MIR 64 202 -6 1 1374 483 293 0 61 chr3 103490303 103490434 -56109349 + MLT1C LTR MaLR 46 168 -299 1 1374 641 163 84 56 chr3 103490434 103490556 -56109227 + B1F SINE Alu 2 129 -20 1 1374 1012 275 84 36 chr3 103490556 103490914 -56108869 + MTEa LTR MaLR 3 377 -2 1 1374 641 163 84 56 chr3 103490914 103490934 -56108849 + B1F SINE Alu 130 148 -1 1 1374 201 143 0 0 chr3 103490969 103491004 -56108779 + (GA)n Simple_repeat Simple_repeat 1 35 0 1 1374 307 330 18 42 chr3 103491106 103491251 -56108532 + MLT1C LTR MaLR 247 463 -4 1 1374 206 382 32 24 chr3 103491260 103491386 -56108397 - MIR SINE MIR -10 252 126 1 1374 956 239 9 5 chr3 103491890 103492104 -56107679 + ID_B1 SINE B4 2 216 -8 1 1374 732 210 0 0 chr3 103492109 103492271 -56107512 + GA-rich Low_complexity Low_complexity 4 165 0 1 1374 1997 152 11 183 chr3 103492760 103493236 -56106547 - ORR1B1 LTR MaLR 0 394 1 1 1374 340 255 146 10 chr3 103493803 103493906 -56105877 - RSINE1 SINE B4 -48 117 1 1 1374 627 286 46 0 chr3 103494547 103494722 -56105061 + ORR1E LTR MaLR 7 189 -170 1 1374 654 195 0 10 chr3 103494765 103494966 -56104817 + CT-rich Low_complexity Low_complexity 1 199 0 1 1374 2457 100 68 25 chr3 103494966 103495366 -56104417 - Lx LINE L1 0 6654 6238 1 1374 587 223 8 8 chr3 103495389 103495511 -56104272 + ORR1E LTR MaLR 250 371 -8 1 1374 833 265 0 35 chr3 103495820 103496023 -56103760 - B3A SINE B2 0 198 3 1 1374 671 269 77 53 chr3 103496160 103496326 -56103457 - B3 SINE B2 -2 214 43 1 1374 3140 49 23 23 chr3 103496326 103496722 -56103061 - MTA_Mm LTR MaLR 0 396 1 1 1374 671 269 77 53 chr3 103496722 103496763 -56103020 - B3 SINE B2 -174 42 2 1 1374 231 36 0 0 chr3 103497020 103497048 -56102735 + (GA)n Simple_repeat Simple_repeat 1 28 0 1 1374 781 223 78 16 chr3 103497560 103497751 -56102032 + B3 SINE B2 1 203 -13 1 1374 2332 95 13 3 chr3 103497759 103498077 -56101706 + ORR1A2 LTR MaLR 3 323 -4 1 1374 307 209 88 15 chr3 103498110 103498178 -56101605 + L1MC4a LINE L1 6606 6678 -1204 1 1374 190 316 61 37 chr3 103498437 103498519 -56101264 - MIR SINE MIR -60 202 119 1 1374 191 211 88 0 chr3 103498616 103498673 -56101110 + MIRc SINE MIR 95 156 -112 1 1374 259 258 182 0 chr3 103499186 103499252 -56100531 + ID4 SINE ID 6 83 0 1 1374 307 280 8 8 chr3 103499397 103499530 -56100253 + CT-rich Low_complexity Low_complexity 3 135 0 1 1374 337 309 21 18 chr3 103499878 103500000 -56099783 + MIRc SINE MIR 11 138 -130 1 1374 327 226 0 77 chr3 103500224 103500315 -56099468 + MT2B LTR ERVL 181 264 -337 1 1374 774 100 9 0 chr3 103500239 103500349 -56099434 + B1_Mus1 SINE Alu 38 148 0 2 1374 1240 197 96 44 chr3 103500851 103501121 -56098662 - MTE2b LTR MaLR -45 334 60 3 1374 225 0 0 0 chr3 103501173 103501198 -56098585 + (A)n Simple_repeat Simple_repeat 1 25 0 4 1374 404 292 36 42 chr3 103501206 103501374 -56098409 + MIRc SINE MIR 94 260 -8 5 1374 1493 250 153 25 chr3 103501418 103501985 -56097798 - RLTR40 LTR ERVK -51 766 127 6 1374 727 161 63 57 chr3 103501974 103502132 -56097651 + B2_Mm2 SINE B2 23 181 -14 7 1374 36488 36 2 6 chr3 103502146 103507107 -56092676 + L1Md_F2 LINE L1 641 5586 -297 8 1374 8350 42 1 3 chr3 103507107 103508105 -56091678 + L1Md_F2 LINE L1 5587 6582 0 8 1374 1183 21 35 0 chr3 103508118 103508259 -56091524 + B1_Mm SINE Alu 2 147 0 9 1374 360 0 0 0 chr3 103508259 103508299 -56091484 + (A)n Simple_repeat Simple_repeat 1 40 0 1 1374 339 302 43 80 chr3 103508413 103508575 -56091208 - RLTR40 LTR ERVK -661 156 1 6 1374 1124 242 154 12 chr3 103508590 103508928 -56090855 + MTD LTR MaLR 20 405 -14 1 1374 831 213 92 0 chr3 103509013 103509187 -56090596 + B3A SINE B2 2 191 -7 1 1374 331 237 144 0 chr3 103509313 103509410 -56090373 + L1ME5 LINE L1 6068 6178 -16 1 1374 435 328 134 42 chr3 103509647 103510045 -56089738 - ORR1E LTR MaLR -5 354 1 1 1374 1233 196 5 0 chr3 103510045 103510259 -56089524 + B3 SINE B2 1 215 -1 1 1374 240 354 51 83 chr3 103510259 103510288 -56089495 - ORR1E-int LTR MaLR -135 1445 1416 1 1374 584 280 57 75 chr3 103510286 103510514 -56089269 - ORR1E-int LTR MaLR -1356 224 1 1 1374 284 298 110 53 chr3 103510516 103510747 -56089036 - ORR1E LTR MaLR -2 377 133 1 1374 285 286 100 50 chr3 103510766 103510843 -56088940 - ORR1E LTR MaLR -212 147 74 1 1374 207 0 0 0 chr3 103510843 103510866 -56088917 + (G)n Simple_repeat Simple_repeat 1 23 0 1 1374 285 286 100 50 chr3 103510866 103510928 -56088855 - ORR1E LTR MaLR -286 73 1 1 1374 3100 155 55 20 chr3 103511910 103512602 -56087181 + RLTR40 LTR ERVK 3 807 -10 1 1374 396 0 0 0 chr3 103513290 103513334 -56086449 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 1374 480 306 88 0 chr3 103513345 103513365 -56086418 - B4A SINE B4 -2 290 271 1 1374 180 111 0 0 chr3 103513365 103513392 -56086391 + (TATATG)n Simple_repeat Simple_repeat 1 27 0 2 1374 480 306 88 0 chr3 103513392 103513541 -56086242 - B4A SINE B4 -22 270 107 1 1374 246 194 60 75 chr3 103513482 103513549 -56086234 - B1F2 SINE Alu -68 81 16 2 1374 1947 224 72 33 chr3 103513559 103514100 -56085683 - RLTR20A2 LTR ERVK -12 566 5 2 1374 351 255 61 41 chr3 103514101 103514199 -56085584 - B4A SINE B4 -191 101 2 1 1374 1747 155 209 3 chr3 103514406 103514755 -56085028 + MTC LTR MaLR 1 421 0 2 1374 303 28 0 0 chr3 103514977 103515013 -56084770 + (TC)n Simple_repeat Simple_repeat 2 37 0 2 1374 234 323 31 46 chr3 103515013 103515143 -56084640 - RMER21A LTR ERV1 -203 744 617 2 1374 234 303 91 48 chr3 103515163 103515350 -56084433 + HAL1 LINE L1 1860 2054 -453 2 1374 943 93 56 28 chr3 103515362 103515506 -56084277 + B1_Mur3 SINE Alu 2 149 0 2 1374 242 186 67 17 chr3 103515659 103515719 -56084064 + MLT1F LTR MaLR 459 521 -27 2 1374 311 178 82 0 chr3 103515742 103515815 -56083968 + HAL1 LINE L1 2267 2345 -162 2 1374 437 104 13 0 chr3 103515817 103515894 -56083889 + (TA)n Simple_repeat Simple_repeat 1 78 0 2 1374 402 57 0 0 chr3 103516038 103516091 -56083692 + (CATA)n Simple_repeat Simple_repeat 3 55 0 3 1374 473 269 10 0 chr3 103516110 103516214 -56083569 + PB1D10 SINE Alu 13 117 0 3 1374 675 314 0 28 chr3 103516234 103516411 -56083372 - MLT1F LTR MaLR -218 330 159 3 1374 417 141 0 0 chr3 103516413 103516484 -56083299 + (TG)n Simple_repeat Simple_repeat 1 71 0 3 1374 333 171 0 103 chr3 103516505 103516583 -56083200 - ID2 SINE ID -13 70 1 3 1374 394 318 27 9 chr3 103516584 103516695 -56083088 - MLT1F LTR MaLR -409 139 27 3 1374 778 207 149 0 chr3 103516789 103516977 -56082806 - B3 SINE B2 0 216 1 3 1374 497 381 58 29 chr3 103517067 103517378 -56082405 - L4 LINE RTE -529 1500 1181 3 1374 381 293 0 0 chr3 103517643 103517742 -56082041 + ID_B1 SINE B4 78 176 -48 3 1374 555 216 0 0 chr3 103517655 103517757 -56082026 + PB1D10 SINE Alu 9 110 -7 3 1374 682 302 49 62 chr3 103518116 103518423 -56081360 + MER102b DNA MER1_type 1 303 -38 3 1374 377 229 47 19 chr3 103519464 103519571 -56080212 - PB1D10 SINE Alu -6 111 2 4 1374 227 275 0 0 chr3 103519633 103519702 -56080081 + (TA)n Simple_repeat Simple_repeat 1 69 0 4 1374 396 0 0 0 chr3 103520135 103520179 -56079604 + (CA)n Simple_repeat Simple_repeat 1 44 0 4 1374 318 106 0 0 chr3 103520625 103520672 -56079111 + (A)n Simple_repeat Simple_repeat 1 47 0 4 1374 396 0 0 0 chr3 103520996 103521040 -56078743 + (CA)n Simple_repeat Simple_repeat 2 45 0 4 1374 792 283 99 26 chr3 103521770 103522122 -56077661 + MTEa LTR MaLR 1 378 -1 4 1374 21 57 0 0 chr3 103522305 103522340 -56077443 + AT_rich Low_complexity Low_complexity 1 35 0 4 1374 405 0 0 0 chr3 103522498 103522543 -56077240 + (CA)n Simple_repeat Simple_repeat 1 45 0 4 1374 761 125 16 0 chr3 103523862 103523990 -56075793 + (TTCC)n Simple_repeat Simple_repeat 4 133 0 4 1374 496 196 24 71 chr3 103523990 103524116 -56075667 - PB1D9 SINE Alu 0 120 1 4 1374 1777 182 36 105 chr3 103524172 103524310 -56075473 + MTD LTR MaLR 4 128 -291 5 1374 1147 83 0 0 chr3 103524310 103524454 -56075329 + B1_Mus1 SINE Alu 5 148 0 5 1374 1777 182 36 105 chr3 103524454 103524762 -56075021 + MTD LTR MaLR 129 419 0 5 1374 347 297 21 21 chr3 103524803 103524896 -56074887 - B4A SINE B4 -199 93 1 5 1374 2045 215 54 3 chr3 103524990 103525381 -56074402 + MTD LTR MaLR 9 419 0 5 1374 231 286 0 0 chr3 103525534 103525590 -56074193 + CT-rich Low_complexity Low_complexity 1 56 0 5 1374 346 296 101 9 chr3 103525590 103525699 -56074084 - ID_B1 SINE B4 -4 220 102 5 1374 683 217 15 78 chr3 103525723 103525928 -56073855 - B3A SINE B2 -5 193 2 5 1374 467 209 204 23 chr3 103526280 103526412 -56073371 + MTE2a LTR MaLR 32 187 -192 5 1374 323 252 42 34 chr3 103527008 103527127 -56072656 + HAL1-3A_ME LINE L1 1911 2030 -828 5 1374 619 296 63 41 chr3 103527189 103527457 -56072326 + B4A SINE B4 1 274 -18 5 1374 1402 232 13 16 chr3 103527459 103527774 -56072009 + Lx6 LINE L1 7121 7434 -26 6 1374 5684 116 63 21 chr3 103528716 103529616 -56070167 - Lx4A LINE L1 0 7058 6121 6 1374 2507 103 99 8 chr3 103529616 103530018 -56069765 + L1_Mur2 LINE L1 4647 5085 -792 6 1374 304 217 28 42 chr3 103530918 103530990 -56068793 - PB1 SINE Alu -2 125 55 6 1374 232 200 0 200 chr3 103530990 103531017 -56068766 - ID_B1 SINE B4 -2 221 143 6 1374 575 62 12 0 chr3 103531803 103531883 -56067900 + (GA)n Simple_repeat Simple_repeat 1 81 0 6 1374 224 303 54 33 chr3 103532104 103532196 -56067587 - L2c LINE L2 -4 3383 3290 6 1374 251 246 29 14 chr3 103532193 103532263 -56067520 + MIR3 SINE MIR 110 180 -28 6 1374 371 173 27 21 chr3 103532305 103532398 -56067385 - MTEa LTR MaLR -9 370 262 6 1374 392 0 21 0 chr3 103532840 103532888 -56066895 + (TC)n Simple_repeat Simple_repeat 2 50 0 6 1374 243 0 0 0 chr3 103533094 103533121 -56066662 + (TC)n Simple_repeat Simple_repeat 2 28 0 7 1374 1129 70 0 0 chr3 103533127 103533269 -56066514 - B1_Mm SINE Alu 0 147 6 7 1374 253 247 107 67 chr3 103533355 103533569 -56066214 - MIRc SINE MIR -7 255 3 7 1374 361 317 59 21 chr3 103533775 103533962 -56065821 - MIRb SINE MIR -66 202 9 7 1374 791 222 81 15 chr3 103534836 103535033 -56064750 + B3 SINE B2 2 211 -5 7 1374 953 187 63 15 chr3 103535939 103536145 -56063638 + B3 SINE B2 1 216 0 7 1374 1070 88 0 33 chr3 103536453 103536591 -56063192 + B1_Mus1 SINE Alu 2 135 -13 7 1374 305 24 0 23 chr3 103536591 103536634 -56063149 + (CAAAA)n Simple_repeat Simple_repeat 3 44 0 7 1374 1070 88 0 33 chr3 103536634 103536647 -56063136 + B1_Mus1 SINE Alu 136 148 0 7 1374 294 29 0 0 chr3 103536817 103536852 -56062931 + (TC)n Simple_repeat Simple_repeat 1 35 0 7 1374 236 206 15 31 chr3 103538876 103538941 -56060842 - L1M2c LINE L1 -6222 567 504 7 1374 23 0 0 0 chr3 103541924 103541947 -56057836 + GC_rich Low_complexity Low_complexity 1 23 0 8 1374 557 271 55 22 chr3 103542889 103543070 -56056713 - B3A SINE B2 -10 188 2 8 1374 427 252 28 9 chr3 103543294 103543402 -56056381 - B3A SINE B2 -80 118 9 8 1374 198 91 0 0 chr3 103545866 103545899 -56053884 + (A)n Simple_repeat Simple_repeat 1 33 0 8 1374 21 71 0 0 chr3 103546750 103546792 -56052991 + AT_rich Low_complexity Low_complexity 1 42 0 8 1375 184 286 122 0 chr3 103549823 103549872 -56049911 + L2 LINE L2 51 105 -3314 8 1375 687 255 15 54 chr3 103550152 103550355 -56049428 - B3A SINE B2 -3 195 1 8 1375 245 310 103 26 chr3 103551121 103551237 -56048546 - MIRb SINE MIR -90 178 54 8 1375 438 248 0 64 chr3 103551400 103551525 -56048258 - PB1D10 SINE Alu 0 117 1 8 1375 580 278 69 6 chr3 103551806 103551980 -56047803 + B3A SINE B2 3 187 -11 8 1375 838 199 0 33 chr3 103552024 103552175 -56047608 - B1_Mur1 SINE Alu -1 148 3 9 1375 1014 260 58 69 chr3 103552378 103552741 -56047042 + ORR1E LTR MaLR 1 359 0 9 1375 504 248 103 8 chr3 103553679 103553805 -56045978 + RSINE1 SINE B4 6 143 -22 9 1375 417 54 0 0 chr3 103553812 103553868 -56045915 + (CA)n Simple_repeat Simple_repeat 1 56 0 9 1375 216 277 0 0 chr3 103557203 103557268 -56042515 + A-rich Low_complexity Low_complexity 1 65 0 9 1375 299 280 15 11 chr3 103558935 103559031 -56040752 - B1F1 SINE Alu -22 98 2 9 1375 21 36 0 0 chr3 103559188 103559216 -56040567 + AT_rich Low_complexity Low_complexity 1 28 0 9 1375 212 261 194 11 chr3 103559994 103560087 -56039696 + MIR SINE MIR 123 232 -30 9 1375 1434 153 107 0 chr3 103560978 103561259 -56038524 + ORR1A2 LTR MaLR 1 311 -16 9 1375 896 82 86 43 chr3 103561339 103561479 -56038304 + B1_Mus1 SINE Alu 2 147 -1 9 1375 207 125 0 0 chr3 103561526 103561566 -56038217 + (CTCA)n Simple_repeat Simple_repeat 1 40 0 1 1375 275 104 62 0 chr3 103561643 103561691 -56038092 - L1MA5 LINE L1 -372 5928 5878 1 1375 717 186 7 7 chr3 103562754 103562895 -56036888 - B1_Mur4 SINE Alu 0 150 10 1 1375 663 252 59 10 chr3 103562944 103563148 -56036635 - ID_B1 SINE B4 -8 216 3 1 1375 436 250 95 7 chr3 103563189 103563326 -56036457 - B1_Mur1 SINE Alu 0 149 1 1 1375 431 262 8 47 chr3 103563381 103563509 -56036274 - RSINE1 SINE B4 -40 125 3 1 1375 352 248 154 42 chr3 103564168 103564311 -56035472 - RSINE1 SINE B4 -4 161 3 1 1375 240 316 0 37 chr3 103565946 103566028 -56033755 - RSINE1 SINE B4 -84 81 3 1 1375 773 122 128 15 chr3 103566271 103566404 -56033379 + B1_Mur3 SINE Alu 1 148 -1 1 1375 2119 145 129 5 chr3 103566615 103567017 -56032766 + RLTR11B LTR ERVK 2 453 0 1 1375 833 182 174 18 chr3 103567052 103567276 -56032507 + RLTR23 LTR ERV1 10 268 -162 1 1375 660 133 58 0 chr3 103567270 103567390 -56032393 + RLTR23 LTR ERV1 177 303 -127 1 1375 231 36 0 0 chr3 103568799 103568827 -56030956 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 1 1375 570 223 153 6 chr3 103569016 103569192 -56030591 + B3 SINE B2 14 215 -1 1 1375 1527 58 11 5 chr3 103569198 103569389 -56030394 + B2_Mm1a SINE B2 2 193 0 1 1375 704 291 98 54 chr3 103569498 103570665 -56029118 + L1MB8 LINE L1 4984 6164 -14 1 1375 896 159 0 27 chr3 103572030 103572179 -56027604 - B1_Mus1 SINE Alu -2 146 2 1 1375 295 265 12 0 chr3 103572449 103572532 -56027251 - Tigger2b DNA MER2_type -70 656 573 1 1375 875 62 28 0 chr3 103572738 103572878 -56026905 + B1_Mm SINE Alu 1 148 -1 1 1375 405 167 218 8 chr3 103573099 103573232 -56026551 - Tigger2b DNA MER2_type -493 233 73 1 1375 427 294 37 0 chr3 103573590 103573726 -56026057 - MER46C DNA MER2_type -20 318 178 1 1375 264 348 154 0 chr3 103573834 103574035 -56025748 + MIR SINE MIR 27 258 -4 1 1375 327 244 55 11 chr3 103574381 103574472 -56025311 + RSINE1 SINE B4 41 135 -30 1 1375 915 159 0 7 chr3 103574531 103574677 -56025106 + B1_Mus1 SINE Alu 3 147 -1 1 1375 416 232 39 125 chr3 103574736 103574864 -56024919 - PB1D10 SINE Alu 0 117 1 1 1375 180 135 0 0 chr3 103575094 103575131 -56024652 + (CCAA)n Simple_repeat Simple_repeat 1 37 0 1 1375 217 265 250 0 chr3 103575151 103575219 -56024564 + B1F2 SINE Alu 5 89 -60 1 1375 282 56 0 0 chr3 103575297 103575333 -56024450 + (GA)n Simple_repeat Simple_repeat 1 36 0 1 1375 232 217 33 16 chr3 103575973 103576034 -56023749 + GA-rich Low_complexity Low_complexity 4 65 0 1 1375 339 266 20 41 chr3 103576313 103576411 -56023372 + PB1D10 SINE Alu 15 110 -7 1 1375 1099 117 122 0 chr3 103576602 103576799 -56022984 + URR1A DNA MER1_type 1 221 -5 1 1375 458 211 60 38 chr3 103578849 103578982 -56020801 + B1F1 SINE Alu 6 141 -8 1 1375 892 288 169 11 chr3 103579255 103579729 -56020054 + L1MB5 LINE L1 5319 5867 -307 1 1375 1008 205 49 0 chr3 103579742 103579947 -56019836 + B3 SINE B2 1 215 -1 1 1375 1371 89 5 0 chr3 103579963 103580153 -56019630 + B2_Mm1a SINE B2 1 191 -2 1 1375 340 232 134 30 chr3 103580169 103580297 -56019486 + B1_Mur1 SINE Alu 26 149 0 1 1375 254 213 32 16 chr3 103580361 103580423 -56019360 - ID4_ SINE ID -19 64 2 1 1375 180 0 0 0 chr3 103580734 103580754 -56019029 + (A)n Simple_repeat Simple_repeat 1 20 0 1 1375 344 239 22 0 chr3 103582566 103582658 -56017125 + RSINE1 SINE B4 36 129 -36 1 1375 222 318 84 0 chr3 103583287 103583394 -56016389 + MIR SINE MIR 117 232 -30 1 1375 372 274 11 0 chr3 103583585 103583680 -56016103 - ID_B1 SINE B4 -2 222 127 1 1375 278 310 67 47 chr3 103583770 103583782 -56016001 + B4A SINE B4 85 151 -141 1 1375 448 221 0 96 chr3 103583782 103583907 -56015876 + PB1 SINE Alu 12 124 -3 1 1375 278 310 67 47 chr3 103583907 103583919 -56015864 + B4A SINE B4 152 236 -56 1 1375 219 232 12 169 chr3 103583952 103584035 -56015748 + ID4_ SINE ID 4 73 -10 1 1375 572 284 227 0 chr3 103584064 103584289 -56015494 + B4A SINE B4 1 276 -16 1 1375 289 241 11 88 chr3 103584353 103584373 -56015410 - B4A SINE B4 -123 169 86 1 1375 367 211 14 0 chr3 103584373 103584444 -56015339 - PB1D10 SINE Alu -45 72 1 1 1375 206 30 91 0 chr3 103584724 103584757 -56015026 + (TTTTG)n Simple_repeat Simple_repeat 2 37 0 1 1375 431 282 30 0 chr3 103585687 103585818 -56013965 - ID_B1 SINE B4 -6 218 84 1 1375 215 125 25 0 chr3 103585953 103585993 -56013790 + (GA)n Simple_repeat Simple_repeat 2 42 0 1 1375 810 153 0 0 chr3 103586828 103586959 -56012824 - B1_Mus1 SINE Alu -5 143 13 1 1375 3615 111 44 145 chr3 103587228 103588069 -56011714 + RMER6A LTR ERVK 1 756 0 1 1375 369 296 85 43 chr3 103588094 103588235 -56011548 - RSINE1 SINE B4 -16 149 3 1 1375 938 86 63 21 chr3 103588266 103588396 -56011387 + B1_Mur4 SINE Alu 1 139 -11 1 1375 199 0 65 0 chr3 103588396 103588427 -56011356 + (TAAAA)n Simple_repeat Simple_repeat 2 34 0 1 1375 938 86 63 21 chr3 103588427 103588439 -56011344 + B1_Mur4 SINE Alu 140 149 -1 1 1375 206 226 38 0 chr3 103588441 103588494 -56011289 + A-rich Low_complexity Low_complexity 3 57 0 1 1375 553 266 158 8 chr3 103588501 103588755 -56011028 + B4A SINE B4 1 292 0 1 1375 493 46 0 0 chr3 103589743 103589808 -56009975 + B1_Mm SINE Alu 73 137 -10 1 1375 393 22 0 0 chr3 103589808 103589854 -56009929 + (GGGA)n Simple_repeat Simple_repeat 3 48 0 1 1375 287 43 0 146 chr3 103589856 103589911 -56009872 + B1_Mus2 SINE Alu 87 133 -14 1 1375 363 44 0 0 chr3 103589911 103589956 -56009827 + (GA)n Simple_repeat Simple_repeat 2 46 0 1 1375 633 147 0 0 chr3 103589948 103590057 -56009726 + (GGA)n Simple_repeat Simple_repeat 2 110 0 1 1375 267 103 0 0 chr3 103590085 103590124 -56009659 + (TAGA)n Simple_repeat Simple_repeat 4 42 0 1 1375 863 241 20 5 chr3 103590402 103590606 -56009177 + B3 SINE B2 9 215 -1 1 1375 1195 106 33 6 chr3 103590728 103590908 -56008875 + B2_Mm2 SINE B2 2 186 -9 1 1375 1639 36 5 0 chr3 103592072 103592264 -56007519 + B2_Mm1t SINE B2 1 193 0 1 1375 22 0 0 0 chr3 103592323 103592345 -56007438 + AT_rich Low_complexity Low_complexity 1 22 0 1 1375 496 253 61 14 chr3 103592366 103592514 -56007269 + RSINE1 SINE B4 3 157 -8 1 1375 925 86 0 7 chr3 103593362 103593502 -56006281 - B1_Mur4 SINE Alu -1 149 11 1 1375 207 88 0 0 chr3 103593714 103593748 -56006035 + (A)n Simple_repeat Simple_repeat 1 34 0 1 1375 275 259 14 41 chr3 103595024 103595169 -56004614 + C-rich Low_complexity Low_complexity 2 142 0 1 1375 401 232 31 10 chr3 103596040 103596136 -56003647 + PB1D9 SINE Alu 18 115 -5 1 1375 1236 27 0 7 chr3 103596143 103596291 -56003492 + B1_Mus1 SINE Alu 2 148 0 1 1375 195 42 0 0 chr3 103596291 103596315 -56003468 + (A)n Simple_repeat Simple_repeat 1 24 0 1 1375 223 286 43 32 chr3 103597345 103597439 -56002344 - L2c LINE L2 -5 3382 3288 1 1375 542 196 28 0 chr3 103597635 103597742 -56002041 + PB1D10 SINE Alu 1 110 -7 1 1375 544 221 0 17 chr3 103597766 103597881 -56001902 + B1F2 SINE Alu 37 149 0 1 1375 428 335 102 0 chr3 103597881 103598174 -56001609 - L2c LINE L2 -528 2891 2569 1 1375 475 252 26 9 chr3 103598191 103598307 -56001476 + B1_Mur1 SINE Alu 13 130 -19 1 1375 795 240 40 10 chr3 103598354 103598552 -56001231 + B3 SINE B2 2 205 -11 1 1375 453 261 54 0 chr3 103598582 103598693 -56001090 - PB1D9 SINE Alu -1 119 3 1 1375 445 267 10 0 chr3 103598808 103598909 -56000874 + PB1D10 SINE Alu 1 102 -15 1 1375 761 214 145 6 chr3 103598926 103599105 -56000678 + B3 SINE B2 2 205 -11 1 1375 633 123 0 30 chr3 103599128 103599249 -56000534 + GA-rich Low_complexity Low_complexity 3 119 0 1 1375 782 49 0 10 chr3 103599249 103599353 -56000430 + (GGGAA)n Simple_repeat Simple_repeat 2 104 0 1 1375 633 123 0 30 chr3 103599353 103599365 -56000418 + polypurine Low_complexity Low_complexity 120 131 0 1 1375 368 279 0 0 chr3 103599373 103599459 -56000324 + PB1D10 SINE Alu 11 96 -21 1 1375 873 249 151 4 chr3 103599488 103599726 -56000057 - B4A SINE B4 -18 274 2 1 1375 669 236 0 0 chr3 103600849 103600972 -55998811 + ID_B1 SINE B4 87 209 -15 1 1375 498 333 37 11 chr3 103601726 103601914 -55997869 + B3A SINE B2 2 194 -4 1 1375 716 126 99 30 chr3 103602227 103602358 -55997425 + B1_Mus2 SINE Alu 1 140 -7 1 1375 333 0 0 0 chr3 103602358 103602395 -55997388 + (CCAA)n Simple_repeat Simple_repeat 2 38 0 1 1375 417 202 13 0 chr3 103602461 103602540 -55997243 + B3A SINE B2 1 80 -118 1 1375 2557 89 3 0 chr3 103602569 103602895 -55996888 + ORR1A2 LTR MaLR 1 327 0 1 1375 289 186 57 0 chr3 103602897 103602967 -55996816 + B3 SINE B2 143 216 0 1 1375 967 73 88 0 chr3 103603947 103604083 -55995700 - B1_Mus1 SINE Alu 0 148 1 1 1375 371 244 0 12 chr3 103604159 103604242 -55995541 + ID4_ SINE ID 2 83 0 1 1375 715 270 23 28 chr3 103604276 103604493 -55995290 + B3 SINE B2 1 216 0 1 1375 494 303 0 22 chr3 103604686 103604821 -55994962 - RSINE1 SINE B4 -31 134 3 1 1375 1201 110 22 6 chr3 103604838 103605021 -55994762 + B2_Mm2 SINE B2 2 187 -8 1 1375 541 215 108 43 chr3 103605033 103605218 -55994565 - B3A SINE B2 -1 197 1 1 1375 225 281 47 0 chr3 103605409 103605473 -55994310 - ID2 SINE ID -13 70 4 1 1375 188 289 165 0 chr3 103605488 103605585 -55994198 - MIRb SINE MIR -34 234 122 1 1375 193 260 73 45 chr3 103606368 103606467 -55993316 - MIR SINE MIR -148 128 31 1 1375 328 293 0 0 chr3 103606617 103606716 -55993067 + MER103 DNA DNA 6 104 -62 2 1375 25 0 0 0 chr3 103606741 103606766 -55993017 + AT_rich Low_complexity Low_complexity 1 25 0 2 1375 231 316 66 39 chr3 103610142 103610323 -55989460 - L2a LINE L2 -4 3422 3237 2 1375 1031 132 138 0 chr3 103610505 103610694 -55989089 - B3 SINE B2 0 216 2 2 1375 1078 64 21 0 chr3 103610730 103610871 -55988912 - B1_Mus1 SINE Alu 0 148 5 2 1375 416 229 202 8 chr3 103611052 103611171 -55988612 - B1_Mm SINE Alu 0 147 6 2 1375 774 170 7 0 chr3 103611694 103611835 -55987948 - B1_Mur3 SINE Alu -2 147 6 2 1375 296 259 0 17 chr3 103612517 103612576 -55987207 - ID4 SINE ID -10 73 16 2 1375 22 0 0 0 chr3 103613419 103613441 -55986342 + GC_rich Low_complexity Low_complexity 1 22 0 2 1375 22 0 0 0 chr3 103614010 103614032 -55985751 + GC_rich Low_complexity Low_complexity 1 22 0 2 1375 196 328 99 16 chr3 103614240 103614361 -55985422 + L2 LINE L2 2363 2493 -926 2 1375 1199 54 7 0 chr3 103614832 103614979 -55984804 - B1_Mus1 SINE Alu 0 148 1 2 1375 531 201 106 50 chr3 103615357 103615498 -55984285 - B1_Mur2 SINE Alu 0 149 1 2 1375 807 227 20 44 chr3 103615505 103615708 -55984075 - B3 SINE B2 -14 202 5 2 1375 548 306 25 25 chr3 103617437 103617598 -55982185 - RSINE1 SINE B4 -2 163 3 2 1375 798 256 55 15 chr3 103617790 103617992 -55981791 + B3 SINE B2 6 215 -1 2 1375 221 304 43 0 chr3 103618037 103618106 -55981677 + ID4_ SINE ID 12 83 0 2 1375 579 236 41 47 chr3 103618213 103618382 -55981401 - B3A SINE B2 -4 194 27 2 1375 459 0 0 0 chr3 103618408 103618459 -55981324 + (TG)n Simple_repeat Simple_repeat 2 52 0 2 1375 443 250 56 37 chr3 103618459 103618567 -55981216 - RSINE1 SINE B4 -41 124 15 2 1375 1617 52 0 0 chr3 103619681 103619874 -55979909 - B2_Mm1a SINE B2 0 193 1 2 1375 443 279 10 0 chr3 103620192 103620296 -55979487 + PB1D10 SINE Alu 12 116 -1 2 1375 281 208 0 14 chr3 103620526 103620599 -55979184 + CT-rich Low_complexity Low_complexity 1 72 0 2 1375 1369 96 21 0 chr3 103620599 103620787 -55978996 - B2_Mm2 SINE B2 -1 194 3 2 1375 1461 235 56 11 chr3 103620787 103621144 -55978639 - MTEb LTR MaLR -4 375 3 2 1375 891 182 0 0 chr3 103621193 103621330 -55978453 - B1_Mur4 SINE Alu -13 137 1 2 1375 1236 99 17 6 chr3 103621337 103621509 -55978274 - B2_Mm2 SINE B2 -19 176 3 2 1375 405 258 11 0 chr3 103621518 103621611 -55978172 - PB1D10 SINE Alu -7 110 17 2 1375 714 105 0 0 chr3 103621788 103621893 -55977890 + (TCTCC)n Simple_repeat Simple_repeat 1 105 0 2 1375 1289 27 0 0 chr3 103622082 103622229 -55977554 + B1_Mm SINE Alu 1 147 0 2 1375 193 89 22 22 chr3 103622229 103622275 -55977508 + (CAAA)n Simple_repeat Simple_repeat 2 47 0 2 1375 266 156 224 45 chr3 103622913 103622980 -55976803 - ID2 SINE ID -3 80 2 2 1375 1131 164 62 33 chr3 103623206 103623547 -55976236 + RLTR20B3 LTR ERVK 5 365 -195 2 1375 400 229 24 0 chr3 103623549 103623632 -55976151 + PB1D9 SINE Alu 15 99 -21 2 1375 197 77 51 0 chr3 103623771 103623810 -55975973 + (TTTTG)n Simple_repeat Simple_repeat 2 42 0 2 1375 286 348 0 43 chr3 103623867 103623984 -55975799 - ID_B1 SINE B4 -112 112 1 2 1375 2441 71 14 31 chr3 103625983 103626332 -55973451 - L1_Mus2 LINE L1 -2 6564 6222 2 1375 874 261 18 18 chr3 103626702 103626924 -55972859 + ID_B1 SINE B4 1 222 -2 2 1375 457 268 31 31 chr3 103626930 103627057 -55972726 + RSINE1 SINE B4 15 141 -24 2 1375 409 288 144 0 chr3 103627105 103627237 -55972546 + RSINE1 SINE B4 6 156 -9 2 1375 273 230 261 60 chr3 103627618 103627752 -55972031 - RSINE1 SINE B4 -1 164 4 2 1375 592 290 57 13 chr3 103627963 103628120 -55971663 - RSINE1 SINE B4 0 165 2 2 1375 768 162 36 22 chr3 103628245 103628384 -55971399 - B1_Mur2 SINE Alu -6 143 3 2 1375 1103 77 145 17 chr3 103628404 103628576 -55971207 - B2_Mm2 SINE B2 -1 194 1 2 1375 228 128 26 0 chr3 103628616 103628655 -55971128 + MT2A LTR ERVL 3 42 -491 2 1375 1204 48 7 0 chr3 103628941 103629087 -55970696 + B1_Mm SINE Alu 1 147 0 2 1375 373 169 28 14 chr3 103629184 103629256 -55970527 - B3A SINE B2 -124 74 2 2 1375 342 261 165 43 chr3 103629616 103629780 -55970003 + MLT1H-int LTR MaLR 1067 1250 -159 2 1375 1479 136 14 0 chr3 103629838 103630059 -55969724 + URR1B DNA MER1_type 1 224 -1 2 1375 1093 269 32 11 chr3 103630513 103630795 -55968988 - B4A SINE B4 0 292 5 2 1375 809 193 204 0 chr3 103630813 103630989 -55968794 - B3 SINE B2 -4 212 1 2 1375 550 186 35 26 chr3 103631037 103631153 -55968630 + B3 SINE B2 100 216 0 2 1375 696 265 17 17 chr3 103631167 103631340 -55968443 - B3 SINE B2 -38 178 6 2 1375 364 164 234 28 chr3 103631376 103631483 -55968300 + B1_Mur4 SINE Alu 15 146 -4 2 1375 825 268 54 0 chr3 103631572 103631777 -55968006 - B3 SINE B2 0 216 1 2 1375 7718 53 11 6 chr3 103631842 103632804 -55966979 + L1_Mus1 LINE L1 5601 6567 0 2 1375 804 173 19 0 chr3 103633171 103633327 -55966456 + MTD LTR MaLR 1 159 -260 2 1375 249 204 0 0 chr3 103633346 103633395 -55966388 - L1MC1 LINE L1 -111 6222 6174 2 1375 855 159 0 0 chr3 103633451 103633602 -55966181 + CT-rich Low_complexity Low_complexity 2 152 0 2 1375 1042 80 72 0 chr3 103633602 103633740 -55966043 - B1_Mus1 SINE Alu 0 148 1 2 1375 1056 234 108 40 chr3 103633743 103633852 -55965931 - L1MC1 LINE L1 -478 5855 5718 2 1375 504 281 119 5 chr3 103633852 103634045 -55965738 + ID_B1 SINE B4 3 217 -7 2 1375 1056 234 108 40 chr3 103634045 103634168 -55965615 - L1MC1 LINE L1 -616 5717 5594 2 1375 217 0 61 0 chr3 103634168 103634201 -55965582 + (TTG)n Simple_repeat Simple_repeat 2 36 0 2 1375 1056 234 108 40 chr3 103634201 103634345 -55965438 - L1MC1 LINE L1 -740 5593 5453 2 1375 207 0 0 0 chr3 103634348 103634371 -55965412 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2 1375 3996 163 138 78 chr3 103634389 103635354 -55964429 - RLTR13D2 LTR ERVK 0 1023 1 2 1375 492 86 0 4 chr3 103635720 103635799 -55963984 - B1_Mur4 SINE Alu 0 150 45 2 1375 345 115 66 0 chr3 103637097 103637158 -55962625 + B1_Mus2 SINE Alu 71 135 -12 2 1375 225 94 0 0 chr3 103637455 103637487 -55962296 + (TTCC)n Simple_repeat Simple_repeat 1 32 0 2 1375 453 281 40 40 chr3 103637748 103637874 -55961909 - RSINE1 SINE B4 -16 149 24 2 1375 1247 90 39 6 chr3 103638401 103638574 -55961209 + B2_Mm2 SINE B2 2 180 -15 2 1375 213 39 0 0 chr3 103638574 103638600 -55961183 + (CAA)n Simple_repeat Simple_repeat 2 27 0 2 1375 205 70 22 44 chr3 103638780 103638825 -55960958 + (CAA)n Simple_repeat Simple_repeat 3 46 0 2 1375 525 276 83 24 chr3 103638959 103639211 -55960572 - L1MC4 LINE L1 -267 7775 7509 2 1375 508 285 62 0 chr3 103639348 103639492 -55960291 + RSINE1 SINE B4 13 165 0 2 1375 238 245 147 0 chr3 103639795 103639897 -55959886 - MER113A DNA MER1_type -189 125 9 2 1375 204 40 0 0 chr3 103640508 103640533 -55959250 + (TG)n Simple_repeat Simple_repeat 1 25 0 2 1375 673 244 87 57 chr3 103640614 103640859 -55958924 - B4 SINE B4 -14 278 42 2 1375 1770 209 48 0 chr3 103640932 103641287 -55958496 + Lx7 LINE L1 7028 7399 -297 2 1375 473 80 13 0 chr3 103641291 103641366 -55958417 + (TG)n Simple_repeat Simple_repeat 1 76 0 2 1375 345 263 0 48 chr3 103641415 103641539 -55958244 + Lx7 LINE L1 7579 7696 0 2 1375 234 128 0 0 chr3 103641595 103641634 -55958149 + (TCTA)n Simple_repeat Simple_repeat 4 42 0 2 1375 1030 63 0 14 chr3 103641648 103641793 -55957990 - B1_Mus1 SINE Alu 0 148 6 2 1375 244 264 18 66 chr3 103641690 103641856 -55957927 - ORR1B1-int LTR MaLR -755 754 597 2 1375 319 272 9 64 chr3 103641856 103641966 -55957817 - Lx7 LINE L1 -30 7666 7563 2 1375 871 100 187 0 chr3 103641969 103642119 -55957664 + B2_Mm1t SINE B2 2 179 -14 2 1375 284 149 305 42 chr3 103642148 103642266 -55957517 + B2_Mm2 SINE B2 47 195 0 2 1375 344 119 17 0 chr3 103642266 103642325 -55957458 + (GA)n Simple_repeat Simple_repeat 1 60 0 2 1375 291 170 0 0 chr3 103643107 103643160 -55956623 + RLTR14 LTR ERV1 1 53 -329 2 1375 242 177 145 0 chr3 103643148 103643210 -55956573 + RLTR14 LTR ERV1 175 245 -137 2 1375 844 147 7 14 chr3 103643253 103643398 -55956385 + RLTR14 LTR ERV1 236 379 -3 2 1375 1159 254 52 26 chr3 103643398 103643705 -55956078 + RLTR14-int LTR ERV1 1 315 -5002 2 1375 321 130 0 0 chr3 103643735 103643789 -55955994 + RLTR14-int LTR ERV1 414 467 -4850 2 1375 4432 118 54 46 chr3 103643789 103644439 -55955344 + RLTR13D6 LTR ERVK 1 677 -225 2 1375 325 0 44 0 chr3 103644439 103644484 -55955299 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 2 1375 1120 59 0 0 chr3 103644484 103644620 -55955163 - B1_Mus2 SINE Alu -11 136 1 2 1375 4432 119 55 48 chr3 103644620 103644821 -55954962 + RLTR13D6 LTR ERVK 578 855 -47 2 1375 2872 105 49 28 chr3 103644821 103645293 -55954490 - RLTR45 LTR ERVK 0 482 1 2 1375 827 152 71 138 chr3 103645293 103645340 -55954443 + RLTR13C2 LTR ERVK 768 806 -2 2 1375 621 211 176 0 chr3 103645342 103645484 -55954299 + RLTR14-int LTR ERV1 1310 1476 -3841 2 1375 5249 194 55 144 chr3 103645600 103647083 -55952700 + RLTR14-int LTR ERV1 1448 2798 -2519 2 1375 431 327 38 33 chr3 103647083 103647295 -55952488 - RMER12 LTR ERVK 0 1322 1110 2 1375 4109 123 63 21 chr3 103647508 103648014 -55951769 - RLTR22_Mur LTR ERVK -1053 795 262 2 1375 2411 121 139 19 chr3 103648014 103648444 -55951339 - RLTR45 LTR ERVK 0 482 1 2 1375 4109 123 63 21 chr3 103648444 103648700 -55951083 - RLTR22_Mur LTR ERVK -1587 261 1 2 1375 7615 132 58 51 chr3 103648700 103649810 -55949973 + RLTR14-int LTR ERV1 2793 3916 -1401 2 1375 4359 19 0 0 chr3 103649810 103650292 -55949491 + LTRIS_Mm LTR ERV1 1 482 0 2 1375 7615 132 58 51 chr3 103650292 103650565 -55949218 + RLTR14-int LTR ERV1 3917 4187 -1130 2 1375 189 0 0 0 chr3 103651238 103651259 -55948524 + (TTG)n Simple_repeat Simple_repeat 2 22 0 2 1375 942 144 0 20 chr3 103651261 103651410 -55948373 - B1_Mur4 SINE Alu -4 146 1 2 1375 11276 60 8 154 chr3 103651448 103653565 -55946218 + RLTR22_Mus LTR ERVK 1 1807 -1 2 1375 29 0 0 0 chr3 103653777 103653806 -55945977 + AT_rich Low_complexity Low_complexity 1 29 0 2 1375 666 250 42 37 chr3 103653808 103653999 -55945784 - B3A SINE B2 -1 197 6 2 1375 544 272 26 26 chr3 103654094 103654245 -55945538 - RSINE1 SINE B4 -2 163 13 3 1375 846 296 38 24 chr3 103655745 103656032 -55943751 - B4A SINE B4 0 292 2 3 1375 189 0 0 0 chr3 103656333 103656354 -55943429 + (GA)n Simple_repeat Simple_repeat 2 22 0 3 1375 464 152 10 0 chr3 103656429 103656528 -55943255 + (TG)n Simple_repeat Simple_repeat 2 101 0 3 1375 1926 232 7 17 chr3 103657193 103657614 -55942169 + Lx9 LINE L1 7052 7468 -176 3 1375 393 22 0 0 chr3 103657616 103657662 -55942121 + (TG)n Simple_repeat Simple_repeat 1 46 0 3 1375 28 29 0 0 chr3 103657732 103657767 -55942016 + AT_rich Low_complexity Low_complexity 1 35 0 3 1375 277 275 66 8 chr3 103657867 103657988 -55941795 - B3A SINE B2 -14 184 57 3 1375 485 310 111 28 chr3 103658752 103659077 -55940706 + Lx7 LINE L1 4655 5006 -1137 3 1375 265 249 23 23 chr3 103659070 103659158 -55940625 + Lx7 LINE L1 5841 5930 -370 3 1375 288 282 123 84 chr3 103659323 103659478 -55940305 + RSINE1 SINE B4 2 162 -3 3 1375 2361 277 59 35 chr3 103659518 103660431 -55939352 + Lx8 LINE L1 5005 5966 -1507 3 1375 209 196 22 0 chr3 103660493 103660539 -55939244 + G-rich Low_complexity Low_complexity 5 51 0 3 1375 533 248 11 113 chr3 103660591 103660628 -55939155 + B3 SINE B2 58 92 -124 3 1375 914 127 42 14 chr3 103660628 103660772 -55939011 - B1_Mur4 SINE Alu -1 149 2 3 1375 533 248 11 113 chr3 103660772 103660911 -55938872 + B3 SINE B2 93 216 0 3 1375 1995 252 85 90 chr3 103660936 103661703 -55938080 + Lx8 LINE L1 6244 7006 -467 3 1375 521 180 0 39 chr3 103661730 103661834 -55937949 - PB1D9 SINE Alu 0 120 21 3 1375 264 108 66 145 chr3 103661768 103661844 -55937939 - MT2B LTR ERVL -362 239 170 3 1375 492 328 110 50 chr3 103661865 103662282 -55937501 + Lx8 LINE L1 7021 7462 -11 3 1375 450 0 0 0 chr3 103662344 103662394 -55937389 + (CA)n Simple_repeat Simple_repeat 2 51 0 3 1375 230 227 0 0 chr3 103662415 103662459 -55937324 - Lx8 LINE L1 -1583 5890 5847 3 1375 343 279 9 55 chr3 103662519 103662629 -55937154 - PB1D10 SINE Alu -8 109 5 3 1375 261 0 0 0 chr3 103663298 103663327 -55936456 + (GA)n Simple_repeat Simple_repeat 1 29 0 3 1375 269 272 24 24 chr3 103663329 103663412 -55936371 - PB1 SINE Alu -21 106 24 3 1375 243 0 0 0 chr3 103665157 103665184 -55934599 + (TTTG)n Simple_repeat Simple_repeat 4 30 0 3 1375 605 167 61 9 chr3 103665185 103665300 -55934483 - B1_Mur1 SINE Alu -23 126 6 3 1375 200 254 0 33 chr3 103665475 103665536 -55934247 + MIRc SINE MIR 141 199 -69 3 1375 289 260 2 22 chr3 103665578 103665672 -55934111 + PB1D10 SINE Alu 20 114 -6 3 1375 219 299 125 11 chr3 103665684 103665772 -55934011 - L2a LINE L2 -26 3400 3303 3 1375 215 333 153 6 chr3 103666128 103666216 -55933567 + L2 LINE L2 2679 2782 -637 3 1375 705 181 34 68 chr3 103666216 103666364 -55933419 - B1_Mur1 SINE Alu -6 143 1 3 1375 215 333 153 6 chr3 103666364 103666432 -55933351 + L2 LINE L2 2783 2857 -562 3 1375 258 303 87 49 chr3 103666445 103666629 -55933154 - L1ME3B LINE L1 -6 6234 6044 3 1375 213 65 0 0 chr3 103667063 103667094 -55932689 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 3 1375 523 268 47 31 chr3 103667159 103667286 -55932497 - B1_Mur2 SINE Alu -20 129 1 3 1375 775 244 0 120 chr3 103667299 103667541 -55932242 - B3 SINE B2 -3 213 1 3 1375 336 103 0 0 chr3 103667870 103667928 -55931855 + (GA)n Simple_repeat Simple_repeat 1 58 0 3 1375 1464 226 126 26 chr3 103668090 103668471 -55931312 - MTD LTR MaLR 0 419 1 3 1375 236 179 9 9 chr3 103668556 103668661 -55931122 + CT-rich Low_complexity Low_complexity 1 105 0 3 1375 299 278 157 0 chr3 103668663 103668771 -55931012 - PB1 SINE Alu -2 125 1 3 1375 235 317 65 125 chr3 103668771 103668798 -55930985 - ID SINE ID -137 87 3 3 1375 246 229 0 116 chr3 103668798 103668867 -55930916 - ID2 SINE ID -20 63 3 3 1375 480 259 200 19 chr3 103669812 103670072 -55929711 + RCHARR1 DNA MER1_type 35 341 -633 3 1375 926 167 21 0 chr3 103670091 103670235 -55929548 - B1_Mus1 SINE Alu -1 147 1 3 1375 23 0 0 0 chr3 103670658 103670681 -55929102 + AT_rich Low_complexity Low_complexity 1 23 0 3 1375 1231 36 0 0 chr3 103670735 103670872 -55928911 + B1_Mus2 SINE Alu 1 137 -10 3 1375 194 0 39 0 chr3 103670872 103670898 -55928885 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3 1375 250 280 19 29 chr3 103670940 103671043 -55928740 - L1ME3B LINE L1 -182 6058 5957 3 1375 342 0 0 0 chr3 103671117 103671155 -55928628 + (TA)n Simple_repeat Simple_repeat 1 38 0 3 1375 1302 160 4 31 chr3 103671155 103671381 -55928402 + URR1B DNA MER1_type 6 225 0 3 1375 289 285 90 23 chr3 103671392 103671525 -55928258 + RCHARR1 DNA MER1_type 833 974 0 3 1375 475 343 8 0 chr3 103672658 103672792 -55926991 - RSINE1 SINE B4 -28 137 3 3 1375 207 0 0 0 chr3 103673312 103673335 -55926448 + (A)n Simple_repeat Simple_repeat 1 23 0 3 1375 524 281 7 7 chr3 103673335 103673471 -55926312 - B1_Mur1 SINE Alu -12 137 2 3 1375 633 161 34 8 chr3 103673578 103673697 -55926086 - B1_Mur1 SINE Alu 0 149 28 3 1375 289 296 91 59 chr3 103673887 103674074 -55925709 + Tigger16a DNA Tigger 387 579 -354 3 1375 307 292 107 73 chr3 103674349 103674632 -55925151 - MTC LTR MaLR 0 421 86 3 1375 2805 112 39 12 chr3 103675252 103675659 -55924124 - MTC LTR MaLR 0 421 4 3 1375 1263 68 0 0 chr3 103675661 103675808 -55923975 + B1_Mus1 SINE Alu 2 148 0 3 1375 231 61 0 0 chr3 103675812 103675845 -55923938 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 3 1375 840 275 70 100 chr3 103677005 103677197 -55922586 - B4 SINE B4 -4 288 85 3 1375 1044 24 0 0 chr3 103677197 103677320 -55922463 + (TCTA)n Simple_repeat Simple_repeat 4 126 0 3 1375 474 248 120 0 chr3 103677327 103677444 -55922339 - B1_Mur1 SINE Alu -17 132 2 3 1375 840 275 70 100 chr3 103677444 103677502 -55922281 - B4 SINE B4 -208 84 38 3 1376 377 236 280 14 chr3 103678964 103679260 -55920523 + Charlie5 DNA MER1_type 2240 2614 -10 3 1376 329 22 44 0 chr3 103679343 103679388 -55920395 + (TTTC)n Simple_repeat Simple_repeat 3 49 0 3 1376 372 22 0 0 chr3 103679946 103679991 -55919792 + (TG)n Simple_repeat Simple_repeat 2 46 0 3 1376 255 79 0 0 chr3 103679993 103680031 -55919752 + (GA)n Simple_repeat Simple_repeat 1 38 0 3 1376 201 132 0 0 chr3 103680691 103680729 -55919054 + (CAA)n Simple_repeat Simple_repeat 2 39 0 3 1376 386 317 48 21 chr3 103680860 103681005 -55918778 - RSINE1 SINE B4 -14 151 3 3 1376 218 338 26 0 chr3 103681472 103681549 -55918234 + ID4 SINE ID 1 79 -4 3 1376 346 247 214 52 chr3 103681545 103681699 -55918084 + MER5A DNA MER1_type 11 189 0 3 1376 259 150 0 32 chr3 103681794 103681856 -55917927 + (TG)n Simple_repeat Simple_repeat 2 61 0 3 1376 1270 224 72 0 chr3 103681877 103682140 -55917643 - B4A SINE B4 -7 285 4 3 1376 194 150 25 0 chr3 103682148 103682188 -55917595 + CT-rich Low_complexity Low_complexity 2 42 0 3 1376 378 0 0 0 chr3 103682208 103682250 -55917533 + (TA)n Simple_repeat Simple_repeat 2 43 0 3 1376 272 83 0 0 chr3 103682255 103682291 -55917492 - PB1D9 SINE Alu -65 55 20 3 1376 240 200 164 0 chr3 103682291 103682308 -55917475 - ID_B1 SINE B4 -86 136 75 3 1376 805 253 53 0 chr3 103682299 103682469 -55917314 - B3 SINE B2 -10 206 28 3 1376 22 0 0 0 chr3 103682540 103682562 -55917221 + AT_rich Low_complexity Low_complexity 1 22 0 3 1376 1033 117 139 62 chr3 103682681 103682890 -55916893 + URR1B DNA MER1_type 1 225 0 3 1376 775 237 97 0 chr3 103682953 103683139 -55916644 + B3 SINE B2 8 211 -5 3 1376 351 274 214 43 chr3 103683160 103683347 -55916436 + ID_B1 SINE B4 1 219 -5 3 1376 209 195 0 0 chr3 103684917 103684958 -55914825 + CT-rich Low_complexity Low_complexity 1 41 0 3 1376 318 284 0 65 chr3 103684958 103685082 -55914701 - ID_B1 SINE B4 -1 223 108 3 1376 531 244 0 15 chr3 103684971 103685108 -55914675 - B1F SINE Alu -14 135 1 3 1376 198 302 63 0 chr3 103685519 103685582 -55914201 + MIRc SINE MIR 153 219 -49 3 1376 257 137 39 0 chr3 103686072 103686123 -55913660 + (TATATG)n Simple_repeat Simple_repeat 2 54 0 3 1376 548 123 0 0 chr3 103686256 103686337 -55913446 + B1_Mur4 SINE Alu 63 143 -7 3 1376 233 268 0 145 chr3 103686270 103686353 -55913430 + B4 SINE B4 165 235 -57 3 1376 785 291 64 0 chr3 103686356 103686693 -55913090 - L1MA9 LINE L1 -50 6241 5824 3 1376 235 329 0 60 chr3 103686695 103686779 -55913004 - ID4 SINE ID -3 80 2 3 1376 374 233 200 0 chr3 103686797 103686887 -55912896 - PB1D10 SINE Alu -8 109 2 3 1376 354 45 0 0 chr3 103686889 103686933 -55912850 + (TG)n Simple_repeat Simple_repeat 1 44 0 3 1376 742 288 39 61 chr3 103687012 103687241 -55912542 - B4A SINE B4 -20 272 49 3 1376 958 240 97 19 chr3 103687253 103687563 -55912220 - L1MA9 LINE L1 -484 5828 5495 3 1376 348 325 19 19 chr3 103687641 103687848 -55911935 - L1M3 LINE L1 -2647 3499 3293 3 1376 904 258 25 51 chr3 103687874 103688143 -55911640 - B4 SINE B4 0 292 48 3 1376 387 253 99 79 chr3 103688172 103688293 -55911490 - L1M3 LINE L1 -2848 3292 3153 3 1376 1189 75 0 13 chr3 103688293 103688442 -55911341 - B1_Mus1 SINE Alu -1 147 1 3 1376 387 253 99 79 chr3 103688442 103688573 -55911210 - L1M3 LINE L1 -2988 3152 3035 3 1376 1459 236 102 28 chr3 103688668 103689139 -55910644 - Lx8 LINE L1 -25 7448 6943 3 1376 187 114 45 0 chr3 103690378 103690422 -55909361 + GA-rich Low_complexity Low_complexity 1 46 0 3 1376 226 293 121 0 chr3 103690958 103691016 -55908767 - ID4_ SINE ID -17 66 2 3 1376 298 211 90 50 chr3 103691148 103691248 -55908535 - BC1_Mm scRNA scRNA -45 107 4 3 1376 408 206 107 45 chr3 103691268 103691380 -55908403 - B1F SINE Alu -5 144 26 3 1376 422 36 18 0 chr3 103691401 103691457 -55908326 + (TG)n Simple_repeat Simple_repeat 2 58 0 3 1376 291 200 224 31 chr3 103691457 103691477 -55908306 - RSINE1 SINE B4 -41 124 99 3 1376 270 0 0 0 chr3 103691477 103691507 -55908276 + (GA)n Simple_repeat Simple_repeat 2 31 0 3 1376 291 200 224 31 chr3 103691507 103691584 -55908199 - RSINE1 SINE B4 -67 98 9 3 1376 282 95 0 0 chr3 103691882 103691924 -55907859 + (TTTTTG)n Simple_repeat Simple_repeat 6 47 0 4 1376 1051 136 0 33 chr3 103691924 103692076 -55907707 - B1_Mus1 SINE Alu 0 148 2 4 1376 243 0 0 0 chr3 103692076 103692103 -55907680 + (A)n Simple_repeat Simple_repeat 1 27 0 4 1376 1122 183 69 0 chr3 103692857 103693059 -55906724 - B3 SINE B2 0 216 1 4 1376 21 36 0 0 chr3 103693177 103693205 -55906578 + AT_rich Low_complexity Low_complexity 1 28 0 4 1376 271 300 73 37 chr3 103694430 103694648 -55905135 + L1MA7 LINE L1 4669 4894 -1249 4 1376 423 119 0 0 chr3 103694651 103694718 -55905065 + (TTTC)n Simple_repeat Simple_repeat 3 69 0 4 1376 1174 62 0 40 chr3 103694721 103694873 -55904910 - B1_Mus1 SINE Alu 0 148 3 4 1376 603 246 57 119 chr3 103694874 103695192 -55904591 + L1MA7 LINE L1 4887 5184 -959 4 1376 201 176 0 0 chr3 103695273 103695307 -55904476 + T-rich Low_complexity Low_complexity 1 34 0 4 1376 969 155 0 0 chr3 103695315 103695457 -55904326 - B1_Mus2 SINE Alu -3 144 3 4 1376 295 128 43 0 chr3 103695600 103695647 -55904136 + B1_Mus2 SINE Alu 86 134 -13 4 1376 947 239 28 9 chr3 103695663 103695678 -55904105 + B3 SINE B2 2 16 -200 4 1376 1939 134 429 102 chr3 103695678 103696245 -55903538 - RMER6A LTR ERVK -4 752 1 4 1376 947 239 28 9 chr3 103696245 103696440 -55903343 + B3 SINE B2 17 216 0 4 1376 244 309 92 21 chr3 103696447 103696589 -55903194 + RSINE1 SINE B4 3 154 -11 4 1376 463 227 35 5 chr3 103696599 103696722 -55903061 + L1MA7 LINE L1 5470 5590 -590 4 1376 773 268 47 90 chr3 103696760 103697039 -55902744 - MTEa LTR MaLR -17 362 96 4 1376 4724 93 82 0 chr3 103697174 103697800 -55901983 + RLTR33 LTR ERVK 2 678 0 4 1376 314 258 82 10 chr3 103697802 103697900 -55901883 - MTEa LTR MaLR -274 105 1 4 1376 3117 255 69 121 chr3 103697902 103698731 -55901052 - MTEa-int LTR MaLR -2 1578 750 4 1376 279 0 0 0 chr3 103698731 103698762 -55901021 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 4 1376 3117 255 69 121 chr3 103698762 103698775 -55901008 - MTE-int LTR MaLR -831 749 749 4 1376 1182 72 0 0 chr3 103698775 103698913 -55900870 - B1_Mus1 SINE Alu -10 138 1 4 1376 3117 255 69 121 chr3 103698913 103699119 -55900664 - MTEa-int LTR MaLR -831 749 584 4 1376 189 0 0 0 chr3 103699120 103699141 -55900642 + (TG)n Simple_repeat Simple_repeat 2 22 0 4 1376 676 297 95 5 chr3 103699155 103699365 -55900418 - B4 SINE B4 -63 229 1 4 1376 1658 304 73 7 chr3 103699365 103699918 -55899865 - MTEa-int LTR MaLR -990 590 1 4 1376 663 254 113 147 chr3 103699920 103700018 -55899765 - MTEa LTR MaLR -6 373 289 4 1376 2094 143 92 3 chr3 103700018 103700355 -55899428 - ORR1B2 LTR MaLR 0 367 1 4 1376 663 254 113 147 chr3 103700355 103700583 -55899200 - MTEa LTR MaLR -91 288 58 4 1376 1202 75 0 13 chr3 103700592 103700741 -55899042 - B1_Mus1 SINE Alu 0 148 2 4 1376 217 273 0 18 chr3 103700773 103700829 -55898954 + GA-rich Low_complexity Low_complexity 1 55 0 4 1376 1046 244 162 47 chr3 103700847 103701219 -55898564 + L1MA7 LINE L1 5607 6041 -250 4 1376 5248 36 2 17 chr3 103701219 103701815 -55897968 - LTRIS_Mus LTR ERV1 0 587 1 4 1376 1046 244 162 47 chr3 103701815 103702035 -55897748 + L1MA7 LINE L1 6042 6267 -24 4 1376 798 194 0 21 chr3 103702074 103702216 -55897567 + B1_Mur3 SINE Alu 1 139 -10 4 1376 419 206 0 30 chr3 103702217 103702317 -55897466 + B2_Mm2 SINE B2 94 190 -5 4 1376 948 210 55 20 chr3 103702416 103702615 -55897168 - B3 SINE B2 -5 211 6 4 1376 546 281 0 0 chr3 103702903 103703024 -55896759 + B1F2 SINE Alu 22 142 -7 4 1376 583 252 26 0 chr3 103703044 103703159 -55896624 + PB1D7 SINE Alu 1 118 -2 4 1376 460 210 227 31 chr3 103703175 103703303 -55896480 + B3 SINE B2 1 153 -63 4 1376 414 0 0 0 chr3 103703303 103703349 -55896434 + (CA)n Simple_repeat Simple_repeat 1 46 0 4 1376 1239 161 123 138 chr3 103703352 103703735 -55896048 - ORR1C2 LTR MaLR 0 384 8 4 1376 258 301 40 33 chr3 103703779 103703930 -55895853 + MIRb SINE MIR 103 254 -14 4 1376 306 0 0 0 chr3 103703981 103704015 -55895768 + (TC)n Simple_repeat Simple_repeat 1 34 0 4 1376 277 164 18 35 chr3 103704015 103704072 -55895711 - PB1D10 SINE Alu -14 103 48 4 1376 819 146 40 6 chr3 103704838 103704991 -55894792 + B1_Mur4 SINE Alu 1 150 0 4 1376 1074 231 72 93 chr3 103705528 103705915 -55893868 + MTE2b LTR MaLR 1 379 0 4 1376 343 362 38 0 chr3 103706171 103706276 -55893507 + ID_B1 SINE B4 94 202 -22 4 1376 198 0 0 0 chr3 103706276 103706298 -55893485 + (TC)n Simple_repeat Simple_repeat 1 22 0 4 1376 386 181 59 28 chr3 103706966 103707057 -55892726 + PB1D9 SINE Alu 38 139 -10 4 1376 210 37 0 0 chr3 103707057 103707084 -55892699 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 4 1376 396 0 0 0 chr3 103707620 103707664 -55892119 + (TA)n Simple_repeat Simple_repeat 1 44 0 4 1376 535 225 276 29 chr3 103707724 103707898 -55891885 + ID_B1 SINE B4 3 219 -5 4 1376 639 115 0 0 chr3 103708027 103708114 -55891669 + B2_Mm2 SINE B2 1 87 -108 4 1376 958 128 7 26 chr3 103708134 103708287 -55891496 - B2_Mm2 SINE B2 -45 150 1 4 1376 692 282 48 27 chr3 103708287 103708428 -55891355 + B3 SINE B2 72 216 0 4 1376 21 0 0 0 chr3 103708469 103708490 -55891293 + AT_rich Low_complexity Low_complexity 1 21 0 4 1376 199 377 45 69 chr3 103710418 103710663 -55889120 - L2a LINE L2 -5 3421 3183 4 1376 180 0 0 0 chr3 103710875 103710895 -55888888 + (TG)n Simple_repeat Simple_repeat 2 21 0 4 1376 549 266 7 59 chr3 103710906 103711058 -55888725 - RSINE1 SINE B4 -6 159 16 4 1376 977 247 45 31 chr3 103711245 103711533 -55888250 - B4A SINE B4 0 292 1 4 1376 612 73 0 0 chr3 103712072 103712154 -55887629 + (GGAA)n Simple_repeat Simple_repeat 3 84 0 4 1376 194 329 79 0 chr3 103712234 103712310 -55887473 + MIRm SINE MIR 189 270 -6 4 1376 417 289 10 0 chr3 103712988 103713092 -55886691 + B1F SINE Alu 6 110 -39 4 1376 1067 213 29 0 chr3 103713425 103713632 -55886151 + B3 SINE B2 1 213 -3 4 1376 41 48 0 0 chr3 103713632 103713694 -55886089 + AT_rich Low_complexity Low_complexity 1 62 0 4 1376 937 151 0 0 chr3 103713924 103714070 -55885713 + B1_Mus1 SINE Alu 2 147 -1 4 1376 309 205 181 39 chr3 103714241 103714368 -55885415 + Charlie26a DNA MER1_type 60 204 -121 4 1376 354 227 0 0 chr3 103714396 103714462 -55885321 + PB1D10 SINE Alu 11 76 -41 4 1376 237 151 0 0 chr3 103714859 103714912 -55884871 + (TG)n Simple_repeat Simple_repeat 1 53 0 4 1376 234 264 93 102 chr3 103714918 103714934 -55884849 - MT2B LTR ERVL -323 278 165 4 1376 352 286 22 2 chr3 103714934 103715033 -55884750 - PB1D10 SINE Alu -16 111 2 4 1376 290 320 10 0 chr3 103714951 103715048 -55884735 - ID_B1 SINE B4 -59 165 68 4 1376 420 215 12 12 chr3 103715654 103715734 -55884049 + ID4 SINE ID 2 81 -2 4 1376 24 85 0 0 chr3 103716210 103716269 -55883514 + AT_rich Low_complexity Low_complexity 1 59 0 4 1376 755 229 87 36 chr3 103716390 103716585 -55883198 - B3 SINE B2 -10 206 2 4 1376 21 36 0 0 chr3 103716608 103716636 -55883147 + AT_rich Low_complexity Low_complexity 1 28 0 4 1376 362 263 31 10 chr3 103716636 103716732 -55883051 - PB1D10 SINE Alu -19 98 1 4 1376 205 286 13 13 chr3 103718787 103718865 -55880918 + (CCG)n Simple_repeat Simple_repeat 1 78 0 4 1376 22 35 0 0 chr3 103719583 103719612 -55880171 + AT_rich Low_complexity Low_complexity 1 29 0 4 1376 294 29 0 0 chr3 103720125 103720160 -55879623 + (TG)n Simple_repeat Simple_repeat 2 36 0 4 1376 610 259 124 5 chr3 103720695 103720881 -55878902 + MER3 DNA MER1_type 2 209 0 4 1376 398 346 62 19 chr3 103721179 103721388 -55878395 + MIR SINE MIR 27 244 -18 4 1376 1828 10 0 5 chr3 103721530 103721724 -55878059 - B2_Mm1a SINE B2 0 193 1 4 1376 599 288 185 78 chr3 103721740 103721866 -55877917 - L1MD1 LINE L1 -16 6226 6091 4 1376 342 0 0 0 chr3 103721866 103721904 -55877879 + (TG)n Simple_repeat Simple_repeat 2 39 0 4 1376 634 298 205 36 chr3 103721904 103722128 -55877655 - L1MD2 LINE L1 -229 6130 5870 4 1376 5347 34 5 0 chr3 103722128 103722722 -55877061 - L1Md_T LINE L1 0 6582 5986 4 1376 555 298 204 35 chr3 103722722 103722800 -55876983 - L1MD2 LINE L1 -490 5869 5782 4 1376 393 117 0 0 chr3 103722800 103722860 -55876923 + (TA)n Simple_repeat Simple_repeat 1 60 0 4 1376 555 298 204 35 chr3 103722860 103723273 -55876510 - L1MD2 LINE L1 -578 5781 5294 4 1376 304 215 48 128 chr3 103723273 103723460 -55876323 - L1MD2 LINE L1 -811 5335 5164 4 1376 192 77 0 0 chr3 103723524 103723550 -55876233 + (T)n Simple_repeat Simple_repeat 1 26 0 4 1376 1161 243 156 8 chr3 103723711 103724076 -55875707 - MTD LTR MaLR 0 419 1 4 1376 286 216 101 11 chr3 103724079 103724168 -55875615 + B1F SINE Alu 40 136 -13 4 1376 527 284 81 20 chr3 103724141 103724339 -55875444 + ID_B1 SINE B4 15 224 0 4 1376 556 244 174 73 chr3 103724373 103724620 -55875163 + MER58B DNA MER1_type 70 341 0 4 1376 235 330 62 9 chr3 103724640 103724753 -55875030 - Tigger12c DNA MER2_type -577 157 39 4 1376 192 322 118 34 chr3 103726064 103726183 -55873600 - MIRc SINE MIR -69 199 71 4 1376 642 229 151 104 chr3 103726356 103726634 -55873149 - B4 SINE B4 0 292 2 4 1376 216 298 80 25 chr3 103726680 103726802 -55872981 - MIRb SINE MIR -3 265 136 4 1376 1401 241 129 67 chr3 103726839 103727453 -55872330 + L1MC1 LINE L1 5526 6177 -156 4 1376 213 39 0 0 chr3 103727523 103727549 -55872234 + (CAAAA)n Simple_repeat Simple_repeat 3 28 0 4 1376 227 351 0 178 chr3 103727559 103727694 -55872089 + PB1D10 SINE Alu 2 112 -5 4 1376 330 330 41 25 chr3 103727574 103727695 -55872088 + ID_B1 SINE B4 98 220 -4 4 1376 254 256 111 37 chr3 103727917 103727998 -55871785 + PB1D10 SINE Alu 31 117 0 4 1376 21 0 0 0 chr3 103728028 103728049 -55871734 + AT_rich Low_complexity Low_complexity 1 21 0 4 1376 349 254 0 0 chr3 103728162 103728229 -55871554 - ID4_ SINE ID -8 75 9 4 1376 390 248 87 27 chr3 103728629 103728778 -55871005 + RSINE1 SINE B4 4 161 -4 4 1376 348 24 0 0 chr3 103729306 103729347 -55870436 + (TTTC)n Simple_repeat Simple_repeat 3 43 0 4 1376 252 0 0 0 chr3 103730143 103730171 -55869612 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 4 1376 887 107 0 0 chr3 103730171 103730293 -55869490 - B1_Mus1 SINE Alu -13 135 14 4 1376 398 313 137 72 chr3 103730545 103731058 -55868725 - L1ME4a LINE L1 -5 6119 5574 5 1376 21 0 0 0 chr3 103731071 103731092 -55868691 + AT_rich Low_complexity Low_complexity 1 21 0 5 1376 277 311 68 0 chr3 103731370 103731473 -55868310 - PB1D10 SINE Alu -6 111 2 5 1376 225 0 0 0 chr3 103731961 103731986 -55867797 + (TG)n Simple_repeat Simple_repeat 2 26 0 5 1376 219 36 0 0 chr3 103734823 103734851 -55864932 + (CAGT)n Simple_repeat Simple_repeat 1 28 0 5 1376 955 48 0 0 chr3 103735328 103735453 -55864330 + B1_Mus2 SINE Alu 23 147 0 5 1376 2196 98 28 6 chr3 103735613 103735933 -55863850 - ORR1A2 LTR MaLR 0 327 1 5 1376 1179 57 0 0 chr3 103736512 103736653 -55863130 - B1_Mus1 SINE Alu -7 141 1 5 1376 1350 82 11 0 chr3 103736791 103736974 -55862809 - B2_Mm1a SINE B2 -8 185 1 5 1376 477 268 29 139 chr3 103737244 103737452 -55862331 + B3A SINE B2 10 194 -4 5 1376 3278 129 27 12 chr3 103737471 103738030 -55861753 + Lx4B LINE L1 6492 7058 0 5 1376 295 281 88 15 chr3 103738196 103738333 -55861450 + MER5A1 DNA MER1_type 1 147 -19 5 1376 972 124 73 6 chr3 103738706 103738734 -55861049 - B2_Mm1t SINE B2 0 193 162 5 1376 387 0 0 0 chr3 103738734 103738777 -55861006 + (TTTA)n Simple_repeat Simple_repeat 3 45 0 5 1376 972 124 73 6 chr3 103738777 103738927 -55860856 - B2_Mm1t SINE B2 -32 161 4 5 1376 1182 97 31 26 chr3 103738930 103739121 -55860662 - B2_Mm2 SINE B2 -3 192 1 5 1376 1237 20 7 0 chr3 103739465 103739611 -55860172 - B1_Mus1 SINE Alu -1 147 1 5 1376 940 209 48 24 chr3 103739989 103740195 -55859588 - B3 SINE B2 -5 211 1 5 1376 195 189 54 0 chr3 103740204 103740241 -55859542 - MER5A DNA MER1_type -122 67 29 5 1376 197 178 0 22 chr3 103741929 103741975 -55857808 + CT-rich Low_complexity Low_complexity 4 48 0 5 1376 831 267 139 12 chr3 103741976 103742234 -55857549 - B4A SINE B4 0 292 2 5 1376 736 262 62 0 chr3 103742328 103742538 -55857245 - ID_B1 SINE B4 -1 223 1 5 1376 469 224 43 37 chr3 103742538 103742692 -55857091 - L1MB4 LINE L1 -7 6173 6018 5 1376 1353 273 96 33 chr3 103742901 103743295 -55856488 - MER54B LTR ERVL 0 793 375 5 1376 1742 142 14 100 chr3 103743374 103743734 -55856049 + ORR1A4 LTR MaLR 1 329 0 5 1376 368 254 76 15 chr3 103744056 103744188 -55855595 - HAL1 LINE L1 -893 1614 1475 5 1376 267 26 0 0 chr3 103744262 103744300 -55855483 + B1_Mur4 SINE Alu 6 43 -107 5 1376 1017 31 0 0 chr3 103744428 103744555 -55855228 - B1_Mus2 SINE Alu 0 147 21 5 1376 274 305 0 12 chr3 103744579 103744662 -55855121 + CT-rich Low_complexity Low_complexity 4 85 0 5 1376 355 282 13 0 chr3 103744667 103744745 -55855038 - ID4 SINE ID -1 82 4 5 1376 480 234 52 35 chr3 103744901 103745016 -55854767 - RSINE1 SINE B4 -25 140 24 5 1376 26 0 0 0 chr3 103745123 103745149 -55854634 + AT_rich Low_complexity Low_complexity 1 26 0 5 1376 261 22 0 0 chr3 103745290 103745335 -55854448 - L1_Mus4 LINE L1 -2 6634 6590 5 1376 372 277 124 16 chr3 103745396 103745517 -55854266 - HAL1 LINE L1 -1601 906 773 5 1376 385 248 67 17 chr3 103745738 103745857 -55853926 - MLT1D LTR MaLR -380 125 1 5 1376 29 0 0 0 chr3 103746370 103746399 -55853384 + AT_rich Low_complexity Low_complexity 1 29 0 5 1376 784 216 18 41 chr3 103746406 103746593 -55853190 + ID_B1 SINE B4 43 220 -72 5 1376 2888 66 0 13 chr3 103746614 103746999 -55852784 + L1Md_F2 LINE L1 6203 6582 0 5 1376 1046 72 50 0 chr3 103747044 103747183 -55852600 + B1_Mm SINE Alu 2 147 0 5 1376 337 298 47 19 chr3 103747214 103747320 -55852463 + PB1 SINE Alu 14 122 -5 5 1376 708 61 0 0 chr3 103747373 103747471 -55852312 + (TCCCC)n Simple_repeat Simple_repeat 1 98 0 5 1376 924 98 0 0 chr3 103747471 103747603 -55852180 + (TTCTC)n Simple_repeat Simple_repeat 4 136 0 5 1376 676 180 13 7 chr3 103747605 103747756 -55852027 + CT-rich Low_complexity Low_complexity 1 152 0 5 1376 587 98 0 10 chr3 103747761 103747849 -55851934 - B1_Mus2 SINE Alu -9 138 31 5 1376 193 306 198 0 chr3 103747993 103748104 -55851679 + L2a LINE L2 3292 3424 -2 5 1376 267 295 11 11 chr3 103748156 103748245 -55851538 - MLT1J LTR MaLR -2 406 318 5 1376 199 374 60 55 chr3 103748416 103748634 -55851149 - L3 LINE CR1 -242 4247 4029 5 1376 370 296 269 0 chr3 103748892 103749078 -55850705 - MLT1J LTR MaLR -268 244 9 5 1376 723 219 7 20 chr3 103749428 103749577 -55850206 - B1_Mus2 SINE Alu 0 147 1 5 1376 915 243 5 11 chr3 103750165 103750352 -55849431 - B3 SINE B2 -26 190 5 5 1376 2921 203 115 36 chr3 103750437 103751234 -55848549 - Lx9 LINE L1 -7 7637 6778 5 1376 2081 231 26 69 chr3 103751241 103751775 -55848008 + RMER19C LTR ERVK 101 611 0 5 1376 2106 239 70 53 chr3 103751775 103752478 -55847305 - Lx9 LINE L1 -863 6781 6067 5 1376 1018 174 68 0 chr3 103752499 103752689 -55847094 - ORR1C1 LTR MaLR 0 378 176 5 1376 272 111 19 0 chr3 103752699 103752753 -55847030 + (CAGA)n Simple_repeat Simple_repeat 4 58 0 5 1376 305 266 0 12 chr3 103752770 103752850 -55846933 - ORR1C1 LTR MaLR -295 83 5 5 1376 6376 191 101 29 chr3 103752851 103754521 -55845262 - Lx9 LINE L1 -1720 5924 4086 5 1376 1662 188 101 61 chr3 103754525 103754626 -55845157 - Lx9 LINE L1 -6414 1194 1088 5 1376 1382 30 71 0 chr3 103754626 103754794 -55844989 - B2_Mm2 SINE B2 -14 181 2 5 1376 1662 188 101 61 chr3 103754794 103755168 -55844615 - Lx9 LINE L1 -6521 1087 700 5 1376 293 286 86 54 chr3 103755205 103755427 -55844356 - Lx9 LINE L1 -6860 748 520 5 1376 349 235 12 36 chr3 103755460 103755544 -55844239 - ID4 SINE ID -1 82 1 5 1376 187 227 68 0 chr3 103756470 103756514 -55843269 + L4 LINE RTE 1369 1415 -614 5 1376 25 0 0 0 chr3 103757304 103757329 -55842454 + AT_rich Low_complexity Low_complexity 1 25 0 5 1376 1205 84 56 6 chr3 103758537 103758716 -55841067 - B2_Mm2 SINE B2 -6 189 2 5 1376 656 210 27 20 chr3 103759119 103759265 -55840518 + B1_Mur1 SINE Alu 1 147 -2 5 1376 339 328 0 32 chr3 103759506 103759692 -55840091 + (TATATG)n Simple_repeat Simple_repeat 1 180 0 5 1376 314 316 33 9 chr3 103759706 103760043 -55839740 + (TATATG)n Simple_repeat Simple_repeat 1 345 0 5 1376 235 305 22 49 chr3 103759966 103760149 -55839634 + (TATG)n Simple_repeat Simple_repeat 1 178 0 5 1376 914 269 68 32 chr3 103760177 103760457 -55839326 - B4A SINE B4 -1 291 2 5 1376 432 236 119 44 chr3 103760499 103760843 -55838940 - L1MA5 LINE L1 0 6300 5940 5 1376 301 331 84 7 chr3 103760949 103761092 -55838691 - HAL1 LINE L1 -766 1741 1588 5 1376 270 188 0 0 chr3 103761286 103761337 -55838446 + T-rich Low_complexity Low_complexity 14 64 0 5 1376 862 154 35 0 chr3 103761337 103761480 -55838303 - B1_Mus1 SINE Alu 0 148 1 5 1376 270 188 0 0 chr3 103761480 103761492 -55838291 + T-rich Low_complexity Low_complexity 2 13 0 5 1376 770 172 215 17 chr3 103761543 103761720 -55838063 - B3 SINE B2 0 216 5 5 1376 834 11 0 0 chr3 103761922 103762017 -55837766 + (TCTA)n Simple_repeat Simple_repeat 2 96 0 5 1376 255 282 14 27 chr3 103762143 103762216 -55837567 + CT-rich Low_complexity Low_complexity 1 72 0 5 1376 1097 70 35 0 chr3 103762263 103762405 -55837378 + B1_Mus1 SINE Alu 2 148 0 5 1376 213 121 0 0 chr3 103762405 103762438 -55837345 + (A)n Simple_repeat Simple_repeat 1 33 0 5 1376 335 352 54 54 chr3 103762443 103762665 -55837118 - MLT1L LTR MaLR -44 566 345 5 1376 654 199 173 84 chr3 103762934 103763148 -55836635 - ORR1D1 LTR MaLR -151 233 1 5 1376 361 268 184 0 chr3 103764170 103764349 -55835434 - L1MB2 LINE L1 -1 6170 5959 5 1376 216 211 0 26 chr3 103764429 103764468 -55835315 + RSINE1 SINE B4 15 52 -113 5 1376 284 250 37 88 chr3 103764722 103764858 -55834925 - L1MB2 LINE L1 -387 5904 5776 5 1376 743 167 243 6 chr3 103765029 103765198 -55834585 - B3 SINE B2 -6 210 2 5 1376 192 284 157 0 chr3 103771001 103771103 -55828680 - MIRc SINE MIR -94 174 57 5 1376 26 0 0 0 chr3 103773301 103773327 -55826456 + AT_rich Low_complexity Low_complexity 1 26 0 5 1376 201 74 0 0 chr3 103773505 103773532 -55826251 + (T)n Simple_repeat Simple_repeat 1 27 0 5 1376 272 200 14 0 chr3 103774054 103774124 -55825659 + CT-rich Low_complexity Low_complexity 1 71 0 5 1376 245 261 0 11 chr3 103774198 103774287 -55825496 + (TA)n Simple_repeat Simple_repeat 2 89 0 5 1376 1074 168 5 21 chr3 103775774 103775963 -55823820 + B3 SINE B2 24 209 -7 5 1376 5131 17 0 0 chr3 103776143 103776721 -55823062 + MERVL-int LTR ERVL 3349 3926 -1559 5 1376 408 260 57 57 chr3 103776795 103776901 -55822882 + PB1 SINE Alu 5 110 -17 5 1376 457 254 140 10 chr3 103777036 103777243 -55822540 + L1ME1 LINE L1 5379 5612 -550 5 1376 248 255 78 39 chr3 103777576 103777678 -55822105 + MLT1A LTR MaLR 76 181 -193 5 1376 249 326 23 0 chr3 103777850 103777936 -55821847 + L1ME1 LINE L1 6018 6105 -74 5 1376 301 216 11 22 chr3 103777948 103778046 -55821737 + L1ME1 LINE L1 6083 6184 0 5 1376 247 256 61 49 chr3 103779167 103779249 -55820534 + B1F SINE Alu 11 93 -56 5 1376 289 322 129 7 chr3 103779543 103779690 -55820093 - Tigger5 DNA MER2_type -2163 243 79 5 1376 245 254 14 0 chr3 103780086 103780157 -55819626 + RSINE1 SINE B4 2 73 -92 5 1376 364 324 56 52 chr3 103780482 103780752 -55819031 - ORR1E LTR MaLR -7 352 82 5 1376 342 280 32 95 chr3 103780835 103780993 -55818790 - LTR84b LTR ERVL -6 755 608 5 1376 517 269 75 71 chr3 103781436 103781704 -55818079 - B4A SINE B4 0 292 24 5 1376 805 239 24 52 chr3 103781766 103781788 -55817995 - B3 SINE B2 -5 211 188 5 1376 1550 145 226 3 chr3 103781788 103782085 -55817698 + ORR1B2 LTR MaLR 5 367 0 5 1376 805 239 24 52 chr3 103782085 103782274 -55817509 - B3 SINE B2 -29 187 6 5 1376 244 308 63 100 chr3 103782340 103782628 -55817155 - ID_B1 SINE B4 0 292 9 5 1376 865 235 78 0 chr3 103783657 103783890 -55815893 + B4A SINE B4 57 292 0 5 1376 1199 200 74 39 chr3 103785941 103786253 -55813530 + MTD LTR MaLR 21 343 -76 5 1376 270 300 19 39 chr3 103786284 103786388 -55813395 + CT-rich Low_complexity Low_complexity 3 104 0 5 1376 259 128 20 41 chr3 103786396 103786445 -55813338 - B1F SINE Alu -87 62 21 5 1376 2199 149 64 5 chr3 103787181 103787571 -55812212 - MTC LTR MaLR -8 413 1 5 1376 305 191 0 0 chr3 103787571 103787636 -55812147 - RCHARR1 DNA MER1_type -61 913 849 6 1376 243 182 262 83 chr3 103787637 103787721 -55812062 + B3 SINE B2 2 100 -116 6 1376 721 240 0 0 chr3 103787819 103787965 -55811818 + B1_Mur1 SINE Alu 3 148 -1 6 1376 384 158 54 95 chr3 103788007 103788154 -55811629 - RCHARR1 DNA MER1_type -108 866 726 6 1376 25 0 0 0 chr3 103788163 103788188 -55811595 + AT_rich Low_complexity Low_complexity 1 25 0 6 1376 576 233 96 25 chr3 103788188 103788386 -55811397 - Lx8 LINE L1 -5 7468 7257 6 1376 24 53 0 0 chr3 103789113 103789151 -55810632 + AT_rich Low_complexity Low_complexity 1 38 0 6 1376 555 274 16 0 chr3 103789262 103789386 -55810397 + B3A SINE B2 1 126 -72 6 1376 473 189 0 43 chr3 103790159 103790253 -55809530 + B1_Mur2 SINE Alu 7 96 -53 6 1376 468 289 9 0 chr3 103790421 103790559 -55809224 + B1F SINE Alu 3 142 -7 6 1376 21 57 0 0 chr3 103793135 103793170 -55806613 + AT_rich Low_complexity Low_complexity 1 35 0 6 1376 4209 254 81 25 chr3 103793170 103794493 -55805290 - Lx8 LINE L1 -2 7471 6075 6 1376 459 328 66 25 chr3 103794499 103794743 -55805040 - MIRb SINE MIR -10 258 5 6 1376 985 186 48 39 chr3 103795522 103795729 -55804054 + B3 SINE B2 2 210 -6 6 1376 218 300 42 14 chr3 103795764 103795835 -55803948 + ID4_ SINE ID 2 74 -9 6 1376 617 244 7 43 chr3 103795773 103795914 -55803869 + B4 SINE B4 13 148 -144 6 1376 22 0 0 0 chr3 103795992 103796014 -55803769 + AT_rich Low_complexity Low_complexity 1 22 0 6 1376 739 201 129 11 chr3 103796014 103796200 -55803583 - B3 SINE B2 -6 210 3 6 1376 789 154 88 0 chr3 103796236 103796372 -55803411 + B1_Mur3 SINE Alu 1 148 -1 6 1376 1270 233 121 27 chr3 103796884 103796931 -55802852 - MT2A LTR ERVL 0 533 491 6 1376 261 83 0 0 chr3 103796931 103796967 -55802816 + (CATA)n Simple_repeat Simple_repeat 1 36 0 6 1376 324 0 0 0 chr3 103796967 103797003 -55802780 + (TG)n Simple_repeat Simple_repeat 1 36 0 6 1376 1270 233 121 27 chr3 103797003 103797325 -55802458 - MT2A LTR ERVL -43 490 129 6 1376 262 257 13 13 chr3 103797339 103797414 -55802369 - MT2A LTR ERVL -458 75 1 6 1376 898 235 192 12 chr3 103797851 103798195 -55801588 + MTD LTR MaLR 1 406 -13 6 1376 333 0 0 0 chr3 103798277 103798314 -55801469 + (TA)n Simple_repeat Simple_repeat 1 37 0 6 1376 2756 59 26 34 chr3 103798316 103798704 -55801079 - Lx3_Mus LINE L1 -8 7001 6617 6 1376 1685 144 95 25 chr3 103800744 103801071 -55798712 + MTC LTR MaLR 72 421 0 6 1376 231 278 100 18 chr3 103803621 103803731 -55796052 - L1MC4 LINE L1 -1010 7032 6914 6 1376 884 121 91 0 chr3 103803770 103803902 -55795881 + B1_Mus2 SINE Alu 2 145 -2 6 1376 289 273 56 21 chr3 103803962 103804104 -55795679 - L1M5 LINE L1 -3347 2799 2653 6 1376 385 238 0 36 chr3 103804292 103804375 -55795408 + ID_B1 SINE B4 91 170 -54 6 1376 435 262 44 77 chr3 103804734 103804916 -55794867 - B2_Mm2 SINE B2 0 195 20 6 1376 550 213 14 47 chr3 103805143 103805291 -55794492 - ID_B1 SINE B4 0 224 82 6 1376 183 80 0 0 chr3 103805352 103805377 -55794406 + (TTTTC)n Simple_repeat Simple_repeat 1 25 0 6 1376 4997 76 41 1 chr3 103805379 103806079 -55793704 - Lx3_Mus LINE L1 0 7009 6282 6 1376 498 241 119 8 chr3 103806123 103806257 -55793526 - B1F2 SINE Alu 0 149 1 6 1376 641 138 21 21 chr3 103807196 103807337 -55792446 + Lx2A1 LINE L1 6867 7007 -1 6 1377 365 208 0 13 chr3 103809147 103809225 -55790558 - B1_Mur4 SINE Alu -52 98 22 6 1377 938 255 50 24 chr3 103809884 103810321 -55789462 + L1MA8 LINE L1 5566 5985 -1023 6 1377 964 228 48 0 chr3 103810425 103810631 -55789152 + B3 SINE B2 1 216 0 6 1377 973 210 60 0 chr3 103811864 103812064 -55787719 - B3 SINE B2 -4 212 1 6 1377 1138 50 0 7 chr3 103812117 103812259 -55787524 + B1_Mus2 SINE Alu 1 141 -6 6 1377 213 232 130 0 chr3 103812350 103812419 -55787364 + MIR SINE MIR 115 192 -70 6 1377 27 0 0 0 chr3 103812579 103812606 -55787177 + AT_rich Low_complexity Low_complexity 1 27 0 6 1377 180 0 0 0 chr3 103812623 103812643 -55787140 + (TA)n Simple_repeat Simple_repeat 2 21 0 6 1377 681 67 0 0 chr3 103812762 103812852 -55786931 + B1_Mus2 SINE Alu 58 147 0 6 1377 234 0 0 0 chr3 103812852 103812878 -55786905 + (A)n Simple_repeat Simple_repeat 1 26 0 6 1377 308 250 62 90 chr3 103812888 103813033 -55786750 + B1_Mur1 SINE Alu 2 142 -7 6 1377 406 274 59 78 chr3 103813036 103813423 -55786360 - L1MEc LINE L1 -4821 1579 1200 6 1377 246 354 81 0 chr3 103813489 103813588 -55786195 - PB1D10 SINE Alu -7 110 4 6 1377 22 35 0 0 chr3 103813672 103813701 -55786082 + AT_rich Low_complexity Low_complexity 1 29 0 6 1377 244 270 214 17 chr3 103813702 103813992 -55785791 - L1MEc LINE L1 -5485 915 569 6 1377 375 198 61 30 chr3 103814329 103814428 -55785355 + ORR1D2 LTR MaLR 1 102 -268 6 1377 216 313 81 19 chr3 103814661 103814826 -55784957 + L2c LINE L2 3225 3425 -1 6 1377 231 36 0 0 chr3 103815311 103815339 -55784444 + (TA)n Simple_repeat Simple_repeat 2 29 0 6 1377 21 57 0 0 chr3 103817181 103817216 -55782567 + AT_rich Low_complexity Low_complexity 1 35 0 6 1377 219 36 0 0 chr3 103817257 103817285 -55782498 + (TA)n Simple_repeat Simple_repeat 1 28 0 6 1377 24 0 0 0 chr3 103821855 103821879 -55777904 + AT_rich Low_complexity Low_complexity 1 24 0 6 1377 716 208 14 0 chr3 103822536 103822680 -55777103 + B3 SINE B2 2 147 -69 6 1377 399 113 0 0 chr3 103822683 103822745 -55777038 + (CATA)n Simple_repeat Simple_repeat 2 63 0 6 1377 374 257 18 27 chr3 103823120 103823232 -55776551 + MLT1A1 LTR MaLR 298 408 0 6 1377 183 42 0 0 chr3 103826279 103826303 -55773480 + (TG)n Simple_repeat Simple_repeat 1 24 0 6 1377 2804 204 76 23 chr3 103826305 103826947 -55772836 + Lx9 LINE L1 6786 7461 -183 6 1377 1378 266 112 34 chr3 103827598 103828524 -55771259 + L1MB7 LINE L1 5107 6106 -78 6 1377 1383 107 16 0 chr3 103829392 103829579 -55770204 + B2_Mm2 SINE B2 2 191 -4 6 1377 570 100 0 0 chr3 103829995 103830095 -55769688 + (CAG)n Simple_repeat Simple_repeat 1 100 0 6 1377 315 247 26 0 chr3 103830495 103830572 -55769211 + PB1 SINE Alu 26 104 -23 6 1377 378 254 0 0 chr3 103830684 103830755 -55769028 - ID4 SINE ID -7 76 6 6 1377 1246 190 139 32 chr3 103831351 103831689 -55768094 + ORR1D1 LTR MaLR 1 374 0 6 1377 234 0 0 0 chr3 103832176 103832202 -55767581 + (TTCA)n Simple_repeat Simple_repeat 1 26 0 6 1377 656 34 22 0 chr3 103832204 103832293 -55767490 - B1_Mus2 SINE Alu -12 135 45 6 1377 253 192 164 0 chr3 103832235 103832308 -55767475 - RLTR25B LTR ERVK -519 509 425 6 1377 696 239 136 0 chr3 103832681 103832711 -55767072 - B3 SINE B2 -6 210 180 6 1377 234 0 0 0 chr3 103832711 103832737 -55767046 + (TATG)n Simple_repeat Simple_repeat 2 27 0 6 1377 696 239 136 0 chr3 103832737 103832890 -55766893 - B3 SINE B2 -37 179 4 6 1377 1323 60 0 0 chr3 103833202 103833518 -55766265 + (TG)n Simple_repeat Simple_repeat 1 316 0 6 1377 925 261 53 32 chr3 103833702 103833987 -55765796 + B4 SINE B4 2 292 0 6 1377 456 243 16 5 chr3 103836020 103836138 -55763645 + PB1 SINE Alu 27 218 -93 6 1377 204 132 74 19 chr3 103836453 103836507 -55763276 + (TAAA)n Simple_repeat Simple_repeat 2 58 0 6 1377 204 67 0 0 chr3 103837719 103837749 -55762034 + (T)n Simple_repeat Simple_repeat 1 30 0 6 1377 213 39 0 0 chr3 103838475 103838501 -55761282 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 6 1377 21 71 0 0 chr3 103838503 103838545 -55761238 + AT_rich Low_complexity Low_complexity 1 42 0 6 1377 1412 16 21 21 chr3 103839097 103839283 -55760500 - L1Md_F2 LINE L1 0 6582 6397 6 1377 228 182 0 0 chr3 103840016 103840060 -55759723 + (TTTA)n Simple_repeat Simple_repeat 1 44 0 6 1377 262 247 24 0 chr3 103840385 103840470 -55759313 - LTR68 LTR ERV1 -646 94 8 6 1377 512 252 62 62 chr3 103840529 103840673 -55759110 + B4 SINE B4 121 264 -28 6 1377 282 245 81 50 chr3 103841279 103841291 -55758492 + ID_B1 SINE B4 120 219 -3 6 1377 461 141 176 0 chr3 103841291 103841376 -55758407 + B1_Mur2 SINE Alu 45 144 -5 6 1377 936 90 97 0 chr3 103841427 103841561 -55758222 + B1_Mus2 SINE Alu 1 147 0 6 1377 201 74 0 0 chr3 103841561 103841588 -55758195 + (A)n Simple_repeat Simple_repeat 1 27 0 6 1377 277 315 41 116 chr3 103841847 103841994 -55757789 - B1F2 SINE Alu -13 136 1 6 1377 944 214 19 42 chr3 103841994 103842081 -55757702 - B4 SINE B4 -210 82 1 6 1377 28 48 0 0 chr3 103842177 103842219 -55757564 + AT_rich Low_complexity Low_complexity 1 42 0 6 1377 267 300 0 41 chr3 103843831 103843904 -55755879 - ID4_ SINE ID -13 70 1 6 1377 601 100 33 0 chr3 103844014 103844104 -55755679 - B1_Mur3 SINE Alu -1 148 56 6 1377 21 0 0 0 chr3 103844183 103844204 -55755579 + AT_rich Low_complexity Low_complexity 1 21 0 6 1377 11911 61 4 1 chr3 103844234 103846498 -55753285 - L1_Mus2 LINE L1 0 6566 4296 6 1377 994 238 162 0 chr3 103846547 103846862 -55752921 + ORR1D2 LTR MaLR 5 370 0 6 1377 550 189 60 8 chr3 103846911 103847044 -55752739 + B1_Mur1 SINE Alu 2 141 -8 6 1377 294 29 0 0 chr3 103847054 103847089 -55752694 + (CAAAC)n Simple_repeat Simple_repeat 1 35 0 6 1377 21 0 0 0 chr3 103847246 103847267 -55752516 + AT_rich Low_complexity Low_complexity 1 21 0 6 1377 281 302 167 0 chr3 103847574 103847670 -55752113 - MIRb SINE MIR -116 152 41 6 1377 285 235 33 100 chr3 103848135 103848225 -55751558 + RSINE1 SINE B4 82 165 0 6 1377 1343 76 27 0 chr3 103848474 103848659 -55751124 - B2_Mm2 SINE B2 -4 191 2 6 1377 473 78 0 0 chr3 103848958 103849022 -55750761 - B1_Mus2 SINE Alu 0 147 84 7 1377 273 306 76 61 chr3 103849022 103849043 -55750740 - ID_B1 SINE B4 0 222 134 7 1377 492 119 27 18 chr3 103849043 103849154 -55750629 - L1Md_F2 LINE L1 0 6582 6471 7 1377 2760 58 3 6 chr3 103849149 103849514 -55750269 - L1Md_F2 LINE L1 0 6582 6219 7 1377 273 306 76 61 chr3 103849514 103849557 -55750226 - ID_B1 SINE B4 -91 133 92 7 1377 631 26 13 0 chr3 103849557 103849635 -55750148 + L1Md_F2 LINE L1 6152 6230 -352 7 1377 1781 118 20 10 chr3 103850224 103850516 -55749267 + Lx4A LINE L1 6762 7056 -2 7 1377 523 177 122 41 chr3 103851515 103851662 -55748121 - RSINE1 SINE B4 -5 160 2 7 1377 516 200 0 0 chr3 103853419 103853549 -55746234 + (TG)n Simple_repeat Simple_repeat 2 131 0 7 1377 524 337 15 48 chr3 103853669 103853875 -55745908 - B4A SINE B4 -9 283 85 7 1377 21 36 0 0 chr3 103854486 103854514 -55745269 + AT_rich Low_complexity Low_complexity 1 28 0 7 1377 279 0 0 0 chr3 103855506 103855537 -55744246 + (CA)n Simple_repeat Simple_repeat 2 32 0 7 1377 630 145 9 52 chr3 103855567 103855683 -55744100 + B2_Mm2 SINE B2 1 111 -84 7 1377 3106 119 89 19 chr3 103855683 103856199 -55743584 + Lx2B LINE L1 6445 6996 -4 7 1377 574 282 88 21 chr3 103856258 103856450 -55743333 - B3 SINE B2 -2 214 10 7 1377 1239 28 0 0 chr3 103856694 103856835 -55742948 - B1_Mm SINE Alu -6 141 1 7 1377 833 266 49 0 chr3 103857321 103857345 -55742438 + B3 SINE B2 1 24 -192 7 1377 2741 87 10 27 chr3 103857345 103857749 -55742034 - L1Md_F2 LINE L1 -2 6580 6184 7 1377 833 266 49 0 chr3 103857749 103857927 -55741856 + B3 SINE B2 25 212 -4 7 1377 1342 310 74 0 chr3 103858744 103859121 -55740662 + Tigger7 DNA MER2_type 1 405 -2086 7 1377 898 193 73 11 chr3 103859123 103859301 -55740482 + B3 SINE B2 1 189 -27 7 1377 436 321 45 0 chr3 103859309 103859443 -55740340 + Tigger7 DNA MER2_type 2348 2487 -4 7 1377 235 314 16 0 chr3 103859583 103859667 -55740116 - MIR SINE MIR -101 167 77 7 1377 184 288 34 111 chr3 103859743 103859860 -55739923 + L2c LINE L2 3277 3384 -3 7 1377 246 156 0 0 chr3 103860873 103860918 -55738865 + T-rich Low_complexity Low_complexity 1 45 0 7 1377 1156 75 0 0 chr3 103860918 103861065 -55738718 - B1_Mus2 SINE Alu 0 147 1 7 1377 380 250 11 11 chr3 103861835 103861928 -55737855 - B3A SINE B2 -14 184 92 7 1377 409 270 189 0 chr3 103862684 103862795 -55736988 + RSINE1 SINE B4 11 142 -23 7 1377 2377 166 9 49 chr3 103864127 103864576 -55735207 - RMER6B LTR ERVK -11 450 20 7 1377 393 212 81 0 chr3 103865246 103865345 -55734438 - PB1 SINE Alu -8 119 13 7 1377 749 220 0 0 chr3 103865781 103865922 -55733861 + B1_Mur1 SINE Alu 1 141 -8 7 1377 4856 121 5 30 chr3 103865966 103867172 -55732611 + L1Md_A LINE L1 446 1618 -4265 7 1377 4771 59 3 64 chr3 103867164 103867524 -55732259 + L1Md_F3 LINE L1 4909 5267 -616 7 1377 1164 55 0 0 chr3 103867524 103867670 -55732113 + B1_Mm SINE Alu 2 147 0 7 1377 4771 59 3 64 chr3 103867670 103868031 -55731752 + L1Md_F3 LINE L1 5268 5586 -297 7 1377 8086 47 4 2 chr3 103868032 103869026 -55730757 + L1Md_F3 LINE L1 5588 6583 -1 7 1377 673 147 18 0 chr3 103869239 103869348 -55730435 - PB1D9 SINE Alu -5 115 5 7 1377 620 245 76 38 chr3 103869462 103869619 -55730164 - B3 SINE B2 -53 163 1 7 1377 24 0 0 0 chr3 103870013 103870037 -55729746 + AT_rich Low_complexity Low_complexity 1 24 0 7 1377 231 305 0 0 chr3 103870280 103870339 -55729444 + MT2A LTR ERVL 298 356 -177 7 1377 233 189 38 0 chr3 103871061 103871114 -55728669 + CT-rich Low_complexity Low_complexity 2 56 0 7 1377 584 177 157 0 chr3 103871348 103871495 -55728288 + Lx7 LINE L1 6381 6550 -1146 7 1377 2606 108 35 23 chr3 103871510 103871937 -55727846 + RMER6A LTR ERVK 1 432 -324 7 1377 2533 109 27 20 chr3 103871972 103872373 -55727410 - Lx3B LINE L1 -3 6970 6567 7 1377 721 275 110 11 chr3 103872376 103872567 -55727216 - B4A SINE B4 -71 221 12 7 1377 893 221 139 52 chr3 103872885 103873172 -55726611 - MTEa LTR MaLR -6 373 62 7 1377 502 174 197 17 chr3 103873813 103873930 -55725853 + B1_Mur1 SINE Alu 3 140 -9 7 1377 708 119 0 68 chr3 103874025 103874142 -55725641 - B1_Mus1 SINE Alu -5 143 35 7 1377 1153 61 0 13 chr3 103874470 103874619 -55725164 + B1_Mus1 SINE Alu 2 148 0 7 1377 181 28 53 53 chr3 103874631 103874669 -55725114 + (CAAAC)n Simple_repeat Simple_repeat 2 39 0 7 1377 547 312 58 7 chr3 103875345 103875500 -55724283 - RSINE1 SINE B4 0 165 3 7 1377 279 157 0 0 chr3 103876539 103876590 -55723193 + (CA)n Simple_repeat Simple_repeat 1 51 0 7 1377 231 293 63 31 chr3 103876675 103876802 -55722981 - Charlie7 DNA MER1_type -2067 545 415 7 1377 4595 61 0 7 chr3 103876876 103877472 -55722311 + L1Md_F2 LINE L1 5991 6582 0 7 1377 1048 146 12 0 chr3 103877998 103878169 -55721614 - URR1A DNA MER1_type 0 226 54 7 1377 311 250 42 0 chr3 103878659 103878731 -55721052 + RSINE1 SINE B4 23 97 -68 7 1377 528 218 160 8 chr3 103878807 103878932 -55720851 - ID_B1 SINE B4 -1 223 80 7 1377 390 318 13 8 chr3 103878942 103879080 -55720703 - B3A SINE B2 0 216 81 7 1377 561 147 39 0 chr3 103879085 103879187 -55720596 + Lx7 LINE L1 742 847 -6881 7 1377 4338 136 35 51 chr3 103879171 103879828 -55719955 + Lx7 LINE L1 952 1621 -4259 7 1377 890 136 0 0 chr3 103879828 103879960 -55719823 + B1_Mur3 SINE Alu 5 136 -13 7 1377 4338 146 30 80 chr3 103879960 103880652 -55719131 + Lx7 LINE L1 1622 2243 -3637 7 1377 6528 130 63 8 chr3 103880643 103880820 -55718963 + Lx7 LINE L1 4113 4294 -1586 7 1377 321 26 0 0 chr3 103880820 103880858 -55718925 + (TA)n Simple_repeat Simple_repeat 2 39 0 7 1377 6528 130 63 8 chr3 103880858 103881163 -55718620 + Lx7 LINE L1 4295 4621 -1259 7 1377 414 0 0 0 chr3 103881163 103881209 -55718574 + (CA)n Simple_repeat Simple_repeat 2 47 0 7 1377 6528 130 63 8 chr3 103881209 103881985 -55717798 + Lx7 LINE L1 4622 5440 -440 7 1377 1003 251 77 12 chr3 103881978 103882301 -55717482 + Lx7 LINE L1 5828 6171 -1525 7 1377 478 92 0 13 chr3 103882349 103882426 -55717357 - Lx LINE L1 -7 6647 6572 7 1377 385 226 35 35 chr3 103882427 103882569 -55717214 - L1MD LINE L1 -639 5603 5462 7 1377 225 239 0 0 chr3 103882613 103882631 -55717152 + (CATA)n Simple_repeat Simple_repeat 1 18 0 7 1377 186 43 0 0 chr3 103882631 103882654 -55717129 + (TG)n Simple_repeat Simple_repeat 2 24 0 7 1377 225 239 0 0 chr3 103882654 103882702 -55717081 + (CATA)n Simple_repeat Simple_repeat 3 50 0 7 1377 855 215 50 20 chr3 103882732 103882931 -55716852 + B3 SINE B2 1 205 -11 7 1377 399 307 131 31 chr3 103883088 103883104 -55716679 - L1M5 LINE L1 -917 5229 5210 7 1377 362 306 0 18 chr3 103883104 103883214 -55716569 - PB1D10 SINE Alu -9 108 1 7 1377 399 307 131 31 chr3 103883214 103883456 -55716327 - L1M5 LINE L1 -937 5209 4945 7 1377 321 287 55 55 chr3 103883529 103883728 -55716055 - L1M5 LINE L1 -1213 4933 4735 7 1377 1645 20 0 0 chr3 103884180 103884376 -55715407 + L1Md_A LINE L1 5391 5586 -297 7 1377 8848 14 0 0 chr3 103884376 103885372 -55714411 + L1Md_A LINE L1 5587 6582 0 7 1377 240 35 0 0 chr3 103885773 103885802 -55713981 + (TC)n Simple_repeat Simple_repeat 2 30 0 7 1377 302 152 17 0 chr3 103886404 103886463 -55713320 + G-rich Low_complexity Low_complexity 4 63 0 7 1377 381 298 239 0 chr3 103887063 103887251 -55712532 - L1M2 LINE L1 -891 5252 5020 7 1377 713 260 29 29 chr3 103887272 103887482 -55712301 - B3 SINE B2 -6 210 1 7 1377 182 151 0 36 chr3 103887786 103887841 -55711942 + (CAGAGA)n Simple_repeat Simple_repeat 2 54 0 7 1377 687 201 70 28 chr3 103888280 103888423 -55711360 - B1_Mur2 SINE Alu 0 149 1 7 1377 512 297 180 0 chr3 103888556 103888795 -55710988 + B4 SINE B4 2 283 -9 7 1377 21 0 0 0 chr3 103888897 103888918 -55710865 + AT_rich Low_complexity Low_complexity 1 21 0 7 1377 486 180 0 0 chr3 103888968 103889068 -55710715 + CT-rich Low_complexity Low_complexity 1 100 0 7 1377 258 56 0 0 chr3 103889542 103889578 -55710205 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 7 1377 744 216 189 5 chr3 103889645 103889836 -55709947 - MIR SINE MIR -30 232 7 7 1377 25 51 0 0 chr3 103889863 103889902 -55709881 + AT_rich Low_complexity Low_complexity 1 39 0 7 1377 600 267 48 29 chr3 103890087 103890295 -55709488 - MER44A DNA MER2_type -127 212 1 7 1377 222 337 167 23 chr3 103890299 103890557 -55709226 + L2a LINE L2 1457 1751 -1668 7 1377 242 116 0 23 chr3 103890562 103890606 -55709177 + (TTTC)n Simple_repeat Simple_repeat 2 44 0 7 1377 1395 75 11 11 chr3 103890627 103890815 -55708968 - B2_Mm2 SINE B2 -7 188 1 7 1377 760 332 45 29 chr3 103890818 103891196 -55708587 + L2a LINE L2 1718 2101 -1318 7 1377 659 325 146 82 chr3 103891199 103891865 -55707918 + L2a LINE L2 2721 3426 0 7 1377 2596 59 112 0 chr3 103891999 103892355 -55707428 + MTA_Mm LTR MaLR 1 396 0 7 1377 309 315 36 27 chr3 103892642 103892753 -55707030 - L2a LINE L2 -13 3413 3302 7 1377 21 82 0 0 chr3 103893839 103893888 -55705895 + AT_rich Low_complexity Low_complexity 1 49 0 7 1377 533 240 54 8 chr3 103894817 103894947 -55704836 - B1_Mur2 SINE Alu -13 136 1 7 1377 592 198 0 0 chr3 103895217 103895318 -55704465 + B3 SINE B2 2 102 -114 7 1377 198 103 0 0 chr3 103895343 103895372 -55704411 + (CATA)n Simple_repeat Simple_repeat 2 30 0 7 1377 262 170 0 0 chr3 103895624 103895671 -55704112 - B1_Mur4 SINE Alu -63 87 41 7 1377 302 279 80 23 chr3 103895759 103895847 -55703936 - PB1D10 SINE Alu -7 110 18 7 1377 399 178 59 10 chr3 103896303 103896405 -55703378 + U6 snRNA snRNA 1 107 0 7 1377 421 228 72 26 chr3 103896405 103896553 -55703230 + RMER1C Other Other 1181 1336 -6 7 1377 336 401 23 8 chr3 103896691 103896819 -55702964 + L2b LINE L2 3245 3374 -1 7 1377 1012 61 0 0 chr3 103897271 103897403 -55702380 + B1_Mus2 SINE Alu 16 147 0 7 1377 243 0 0 0 chr3 103897403 103897430 -55702353 + (A)n Simple_repeat Simple_repeat 1 27 0 7 1377 21 0 0 0 chr3 103898075 103898096 -55701687 + AT_rich Low_complexity Low_complexity 1 21 0 7 1377 22 35 0 0 chr3 103898513 103898542 -55701241 + AT_rich Low_complexity Low_complexity 1 29 0 7 1377 1125 75 0 20 chr3 103898542 103898692 -55701091 - B1_Mus1 SINE Alu 0 148 2 7 1377 636 272 91 30 chr3 103898695 103898892 -55700891 - B3 SINE B2 -6 210 2 7 1377 24 53 0 0 chr3 103899354 103899392 -55700391 + AT_rich Low_complexity Low_complexity 1 38 0 7 1377 297 0 0 0 chr3 103899392 103899425 -55700358 + (TG)n Simple_repeat Simple_repeat 2 34 0 8 1377 185 139 23 0 chr3 103899436 103899479 -55700304 + GA-rich Low_complexity Low_complexity 2 45 0 8 1377 391 309 143 24 chr3 103900005 103900214 -55699569 + MLT1H2 LTR MaLR 343 576 -3 8 1377 387 197 550 7 chr3 103900814 103900955 -55698828 - URR1B DNA MER1_type -8 217 1 8 1377 226 322 153 49 chr3 103900955 103901138 -55698645 + Lx8 LINE L1 7233 7434 -39 8 1377 409 248 27 18 chr3 103901176 103901287 -55698496 + RSINE1 SINE B4 4 115 -50 8 1377 744 259 171 43 chr3 103901288 103901663 -55698120 - L1M3 LINE L1 -1982 4158 3736 8 1377 508 243 193 17 chr3 103901884 103902185 -55697598 - L1M3 LINE L1 -2874 3266 2913 8 1377 3943 54 0 25 chr3 103902194 103902709 -55697074 + L1Md_F2 LINE L1 6069 6570 -12 8 1377 2052 55 7 4 chr3 103902830 103903102 -55696681 - L1_Mus2 LINE L1 0 6566 6294 8 1377 21 0 0 0 chr3 103903538 103903559 -55696224 + AT_rich Low_complexity Low_complexity 1 21 0 8 1377 1275 275 56 8 chr3 103903559 103903918 -55695865 - MER99 DNA hAT? -263 568 193 8 1377 246 224 0 0 chr3 103904108 103904175 -55695608 + T-rich Low_complexity Low_complexity 1 67 0 8 1377 1106 83 0 0 chr3 103904176 103904321 -55695462 - B1_Mus1 SINE Alu 0 148 4 8 1377 529 321 41 99 chr3 103905061 103905355 -55694428 - LTR41B LTR ERVL -5 753 477 8 1377 373 296 123 63 chr3 103905661 103905964 -55693819 - LTR41B LTR ERVL -436 332 17 8 1377 659 322 27 4 chr3 103906363 103906625 -55693158 - L1MC4 LINE L1 -1049 6993 6726 8 1377 299 155 11 35 chr3 103907863 103907950 -55691833 + GA-rich Low_complexity Low_complexity 3 87 0 8 1377 1298 187 84 68 chr3 103908231 103908599 -55691184 + ORR1D1 LTR MaLR 1 374 0 8 1377 835 237 21 31 chr3 103908946 103909138 -55690645 + B3 SINE B2 20 209 -7 8 1377 424 300 76 8 chr3 103909433 103909564 -55690219 - RSINE1 SINE B4 -1 164 25 8 1377 24 53 0 0 chr3 103909815 103909853 -55689930 + AT_rich Low_complexity Low_complexity 1 38 0 8 1377 696 314 154 54 chr3 103910011 103910589 -55689194 + L2 LINE L2 2287 2922 -497 8 1377 225 0 0 0 chr3 103910625 103910650 -55689133 + (CAAAAA)n Simple_repeat Simple_repeat 6 30 0 8 1377 1287 107 17 0 chr3 103911562 103911739 -55688044 - B2_Mm2 SINE B2 -14 181 2 8 1377 1145 195 5 18 chr3 103912396 103912615 -55687168 - B3 SINE B2 0 216 1 8 1377 584 253 174 6 chr3 103912915 103913082 -55686701 + B3 SINE B2 5 199 -17 8 1377 237 211 0 0 chr3 103913098 103913150 -55686633 + C-rich Low_complexity Low_complexity 5 56 0 8 1377 442 305 81 81 chr3 103913640 103913886 -55685897 - L3 LINE CR1 -1071 3418 3173 8 1377 611 276 143 29 chr3 103914083 103914258 -55685525 - ID_B1 SINE B4 -28 196 2 8 1377 22 35 0 0 chr3 103914272 103914301 -55685482 + AT_rich Low_complexity Low_complexity 1 29 0 8 1377 710 224 0 70 chr3 103914602 103914760 -55685023 - B1_Mur2 SINE Alu -2 147 1 8 1377 215 273 29 29 chr3 103914802 103914870 -55684913 + ID4 SINE ID 13 80 -3 8 1377 378 340 21 0 chr3 103915015 103915112 -55684671 - PB1D10 SINE Alu -9 108 10 8 1377 335 202 13 0 chr3 103915132 103915211 -55684572 + CT-rich Low_complexity Low_complexity 2 81 0 8 1377 1111 56 0 0 chr3 103915212 103915355 -55684428 - B1_Mus1 SINE Alu 0 148 6 8 1377 216 323 131 30 chr3 103915532 103915631 -55684152 - ID_B1 SINE B4 -115 109 1 8 1377 876 236 159 48 chr3 103916280 103916570 -55683213 + MTEa LTR MaLR 1 322 -57 8 1377 1244 239 52 41 chr3 103916575 103916938 -55682845 + Lx6 LINE L1 7085 7451 -9 8 1377 250 149 21 0 chr3 103916939 103916986 -55682797 + MTEa LTR MaLR 307 354 -25 8 1377 222 239 150 22 chr3 103917288 103917401 -55682382 + B1F2 SINE Alu 6 133 -16 8 1377 505 189 9 28 chr3 103917527 103917636 -55682147 - B1F SINE Alu -36 113 7 8 1377 290 291 97 76 chr3 103917636 103917666 -55682117 - B4 SINE B4 -76 195 69 8 1377 797 229 19 47 chr3 103917690 103917901 -55681882 - B3 SINE B2 -11 205 1 8 1377 33 66 0 0 chr3 103917923 103917984 -55681799 + AT_rich Low_complexity Low_complexity 1 61 0 8 1377 1962 75 53 23 chr3 103917987 103918288 -55681495 - L1_Mus1 LINE L1 0 6567 6258 8 1377 627 70 30 0 chr3 103918349 103918449 -55681334 + L1Md_F2 LINE L1 6478 6580 -2 8 1377 392 222 0 0 chr3 103918528 103918600 -55681183 - PB1D9 SINE Alu 0 120 49 8 1377 513 225 0 51 chr3 103919590 103919707 -55680076 + B1_Mus2 SINE Alu 34 144 -3 8 1377 250 377 46 5 chr3 103919804 103920020 -55679763 + Kanga2_a DNA Tc2 202 426 -462 8 1377 1617 97 4 4 chr3 103920408 103920645 -55679138 - Lx2 LINE L1 0 6997 6761 8 1377 38500 36 0 3 chr3 103920703 103926945 -55672838 - L1Md_T LINE L1 0 6585 262 8 1377 456 200 0 0 chr3 103926993 103927088 -55672695 + (CA)n Simple_repeat Simple_repeat 2 96 0 8 1377 249 305 163 54 chr3 103927340 103927579 -55672204 + L1M5 LINE L1 5513 5777 -347 8 1377 898 275 34 13 chr3 103927831 103928056 -55671727 + B4 SINE B4 2 231 -61 8 1377 1979 142 155 18 chr3 103928056 103928495 -55671288 + RMER4B LTR ERVK 1 466 0 8 1377 966 237 84 43 chr3 103928584 103928894 -55670889 - ORR1E LTR MaLR -67 312 2 8 1377 1127 65 19 13 chr3 103929275 103929432 -55670351 + B2_Mm2 SINE B2 1 158 -37 8 1377 335 260 52 26 chr3 103930690 103930715 -55669068 - L1MA4A LINE L1 -126 6177 6153 8 1377 558 215 28 7 chr3 103930715 103930860 -55668923 - L1MA6 LINE L1 -19 6281 6134 8 1377 1651 5 15 0 chr3 103930853 103931050 -55668733 - L1Md_T LINE L1 0 6582 6383 8 1377 480 203 62 8 chr3 103931050 103931179 -55668604 - L1MA6 LINE L1 -151 6149 6014 8 1377 632 265 93 0 chr3 103931268 103931419 -55668364 - RSINE1 SINE B4 0 165 1 8 1377 1453 34 73 0 chr3 103931571 103931750 -55668033 - B2_Mm1a SINE B2 0 193 2 8 1377 367 326 80 3 chr3 103932062 103932248 -55667535 - MIR SINE MIR -2 260 69 8 1377 203 291 63 95 chr3 103932523 103932618 -55667165 - MIR SINE MIR -155 107 16 8 1377 700 184 13 0 chr3 103932649 103932801 -55666982 + GA-rich Low_complexity Low_complexity 2 155 0 8 1377 914 249 133 15 chr3 103932802 103933269 -55666514 + RCHARR1 DNA MER1_type 138 659 -315 8 1377 920 184 49 35 chr3 103934239 103934465 -55665318 + RCHARR1 DNA MER1_type 651 879 -95 8 1377 231 262 292 53 chr3 103934458 103934571 -55665212 - B1F SINE Alu -7 142 3 8 1377 273 312 146 45 chr3 103934621 103935146 -55664637 + L2c LINE L2 2629 3224 -163 8 1377 1513 42 11 0 chr3 103936563 103936752 -55663031 - B2_Mm1a SINE B2 -1 192 2 8 1377 690 281 164 1 chr3 103936925 103937293 -55662490 + MER68 LTR ERVL 1 483 -124 8 1377 35 41 0 0 chr3 103937427 103937476 -55662307 + AT_rich Low_complexity Low_complexity 1 49 0 8 1377 209 267 183 0 chr3 103938567 103938627 -55661156 - L2c LINE L2 -47 3340 3270 8 1377 810 83 277 65 chr3 103939284 103939439 -55660344 - B2_Mm2 SINE B2 -6 189 2 8 1377 192 40 0 0 chr3 103939688 103939713 -55660070 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 8 1377 1650 249 128 57 chr3 103939719 103939964 -55659819 - L1MC3 LINE L1 -17 7768 7517 8 172 1248 91 31 21 chr3 103939964 103940155 -55659628 - B2_Mm2 SINE B2 -2 193 1 8 1378 1650 249 128 57 chr3 103940155 103940579 -55659204 - L1MC3 LINE L1 -269 7516 7045 8 1378 2190 15 114 0 chr3 103940579 103940841 -55658942 + RLTR10B LTR ERVK 1 292 0 8 1378 1650 249 128 57 chr3 103940841 103940978 -55658805 - L1MC3 LINE L1 -741 7044 6904 8 1378 301 200 202 32 chr3 103940983 103941107 -55658676 + Lx5 LINE L1 6906 7050 0 8 1378 971 224 24 0 chr3 103942288 103942493 -55657290 + B3 SINE B2 1 210 -6 8 1378 3863 191 97 81 chr3 103942695 103943711 -55656072 + RMER1B Other Other 33 1065 -1 8 1378 23 0 0 0 chr3 103943711 103943734 -55656049 + AT_rich Low_complexity Low_complexity 1 23 0 8 1378 23 0 0 0 chr3 103943877 103943900 -55655883 + AT_rich Low_complexity Low_complexity 1 23 0 8 1378 271 283 122 30 chr3 103943918 103944049 -55655734 - B1F SINE Alu -6 143 1 8 1378 750 285 76 22 chr3 103945172 103945448 -55654335 - B4A SINE B4 0 292 2 8 1378 25 31 0 0 chr3 103945874 103945906 -55653877 + AT_rich Low_complexity Low_complexity 1 32 0 8 1378 21 0 0 0 chr3 103946125 103946146 -55653637 + AT_rich Low_complexity Low_complexity 1 21 0 8 1378 360 185 92 0 chr3 103946814 103946879 -55652904 + RSINE1 SINE B4 12 82 -83 8 1378 257 309 20 10 chr3 103946982 103947080 -55652703 + MIR SINE MIR 122 220 -42 8 1378 308 350 101 63 chr3 103947396 103947634 -55652149 + L2c LINE L2 2624 2870 -549 8 1378 237 65 0 0 chr3 103947886 103947917 -55651866 + (TAA)n Simple_repeat Simple_repeat 2 32 0 8 1378 673 234 50 0 chr3 103948409 103948550 -55651233 + B1_Mur2 SINE Alu 1 148 -1 8 1378 22 0 0 0 chr3 103948924 103948946 -55650837 + AT_rich Low_complexity Low_complexity 1 22 0 8 1378 541 303 70 10 chr3 103949266 103949466 -55650317 - B3 SINE B2 -3 213 2 8 1378 219 284 180 11 chr3 103950000 103950089 -55649694 + L2c LINE L2 3248 3351 -36 8 1378 352 284 24 65 chr3 103950227 103950351 -55649432 + PB1D7 SINE Alu 2 120 0 8 1378 24 53 0 0 chr3 103950424 103950462 -55649321 + AT_rich Low_complexity Low_complexity 1 38 0 8 1378 249 294 35 12 chr3 103950973 103951059 -55648724 + RMER1C Other Other 1241 1328 -14 8 1378 6703 188 63 29 chr3 103951074 103952440 -55647343 + Lx5 LINE L1 5638 7050 0 8 1378 1034 127 14 0 chr3 103952699 103952860 -55646923 - RLTR20B2 LTR ERVK -324 203 5 8 1378 329 272 150 13 chr3 103952866 103953019 -55646764 + L2b LINE L2 2394 2567 -852 8 1378 183 278 95 27 chr3 103953124 103953198 -55646585 + MIRb SINE MIR 190 268 0 8 1378 1965 69 3 21 chr3 103953241 103953523 -55646260 - L1Md_F2 LINE L1 0 6582 6306 8 1378 330 336 61 106 chr3 103953590 103953883 -55645900 + MLT1J2 LTR MaLR 102 381 -67 8 1378 219 305 158 0 chr3 103954713 103954808 -55644975 + MIR SINE MIR 34 143 -119 9 1378 183 392 75 0 chr3 103955167 103955287 -55644496 + L2b LINE L2 2887 3015 -404 8 1378 3969 72 15 0 chr3 103955358 103955884 -55643899 - L1Md_F2 LINE L1 -739 5144 4611 9 1378 3667 43 0 0 chr3 103955879 103956322 -55643461 + L1Md_F2 LINE L1 5144 5586 -297 9 1378 8043 47 4 2 chr3 103956322 103957304 -55642479 + L1Md_F2 LINE L1 5587 6570 -12 9 1378 187 352 64 32 chr3 103957310 103957404 -55642379 + L2b LINE L2 3104 3200 -226 8 1378 26 30 0 0 chr3 103957459 103957492 -55642291 + AT_rich Low_complexity Low_complexity 1 33 0 9 1378 212 322 32 48 chr3 103957656 103957718 -55642065 - ID4_ SINE ID -18 65 5 9 1378 2379 145 55 5 chr3 103957718 103958120 -55641663 + RMER19A LTR ERVK 1 422 -315 9 1378 661 156 0 35 chr3 103958155 103958268 -55641515 - B1_Mur4 SINE Alu -40 110 2 9 1378 199 338 28 14 chr3 103958285 103958357 -55641426 + L2b LINE L2 3289 3361 -14 8 1378 231 36 0 0 chr3 103959520 103959548 -55640235 + (TAAA)n Simple_repeat Simple_repeat 2 29 0 9 1378 2556 58 0 0 chr3 103960222 103960549 -55639234 - L1Md_F2 LINE L1 0 6582 6256 9 1378 699 118 18 0 chr3 103960549 103960659 -55639124 + RMER15 LTR ERVL 42 153 -422 9 1378 249 208 139 0 chr3 103961150 103961251 -55638532 - L1M5 LINE L1 -2156 3990 3876 9 1378 214 208 26 53 chr3 103961916 103961992 -55637791 + CT-rich Low_complexity Low_complexity 3 76 0 9 1378 203 0 0 36 chr3 103962365 103962393 -55637390 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 9 1378 22 70 0 0 chr3 103962558 103962601 -55637182 + AT_rich Low_complexity Low_complexity 1 43 0 9 1378 219 204 0 0 chr3 103963643 103963697 -55636086 + GA-rich Low_complexity Low_complexity 1 54 0 9 1378 503 305 0 0 chr3 103963721 103963826 -55635957 - RSINE1 SINE B4 -59 106 2 9 1378 1649 158 144 26 chr3 103964661 103965090 -55634693 + RMER6A LTR ERVK 180 690 0 9 1378 24 0 0 0 chr3 103965417 103965441 -55634342 + AT_rich Low_complexity Low_complexity 1 24 0 9 1378 6530 58 0 0 chr3 103966486 103967298 -55632485 + L1Md_T LINE L1 5771 6582 0 9 1378 463 289 22 29 chr3 103967318 103967457 -55632326 + Lx8 LINE L1 7102 7239 -234 9 1378 180 0 0 0 chr3 103967473 103967493 -55632290 + (TAAAAA)n Simple_repeat Simple_repeat 2 21 0 9 1378 529 277 101 0 chr3 103967591 103967739 -55632044 + RSINE1 SINE B4 3 165 0 9 1378 487 282 87 87 chr3 103967898 103968139 -55631644 - B4 SINE B4 -18 274 34 9 1378 223 381 95 38 chr3 103968756 103968966 -55630817 - MIRb SINE MIR -32 236 15 9 1378 233 329 223 30 chr3 103969288 103969655 -55630128 - L2c LINE L2 -40 3347 2910 9 1378 212 93 47 0 chr3 103969767 103969810 -55629973 + (CAGA)n Simple_repeat Simple_repeat 2 46 0 9 1378 329 288 136 58 chr3 103970673 103970931 -55628852 + RLTR12A LTR ERVK 118 395 -133 9 1378 26 30 0 0 chr3 103971627 103971660 -55628123 + AT_rich Low_complexity Low_complexity 1 33 0 9 1378 25 0 0 0 chr3 103973102 103973127 -55626656 + AT_rich Low_complexity Low_complexity 1 25 0 9 1378 185 175 75 0 chr3 103973402 103973442 -55626341 - L2a LINE L2 -2 3424 3382 9 1378 485 359 183 11 chr3 103973443 103973792 -55625991 - L2 LINE L2 -527 2892 2484 9 1378 23 86 0 0 chr3 103974145 103974203 -55625580 + AT_rich Low_complexity Low_complexity 1 58 0 9 1378 429 228 43 0 chr3 103974732 103974824 -55624959 + B3A SINE B2 87 182 -16 9 1378 339 121 0 0 chr3 103974938 103974996 -55624787 + (CA)n Simple_repeat Simple_repeat 2 59 0 9 1378 316 300 90 23 chr3 103975106 103975239 -55624544 - L1M5 LINE L1 -893 5253 5112 9 1378 2273 44 10 10 chr3 103975387 103975684 -55624099 + L1Md_F2 LINE L1 6285 6581 -1 9 1378 657 267 84 0 chr3 103975695 103975886 -55623897 + B3 SINE B2 1 207 -9 9 1378 1320 112 16 0 chr3 103976537 103976725 -55623058 - B2_Mm2 SINE B2 -2 193 3 9 1378 2547 42 0 0 chr3 103976908 103977219 -55622564 - L1Md_T LINE L1 -1 6581 6271 9 1378 2092 153 152 17 chr3 103977295 103977729 -55622054 + MT2A LTR ERVL 5 576 -8 9 1378 1049 228 114 4 chr3 103978079 103978334 -55621449 - B4 SINE B4 -8 284 2 9 1378 282 29 0 0 chr3 103978541 103978576 -55621207 + (A)n Simple_repeat Simple_repeat 1 35 0 9 1378 1179 57 36 103 chr3 103978588 103978782 -55621001 + B2_Mm2 SINE B2 1 181 -14 9 1378 247 324 88 0 chr3 103979263 103979331 -55620452 - L2b LINE L2 -25 3350 3277 9 1378 987 185 354 4 chr3 103979448 103979719 -55620064 - ORR1D1 LTR MaLR -4 370 5 9 1378 32 0 0 0 chr3 103979719 103979751 -55620032 + AT_rich Low_complexity Low_complexity 1 32 0 9 1378 7800 87 7 1 chr3 103979773 103981084 -55618699 - L1_Mus4 LINE L1 -6 6630 5314 9 1378 8762 79 19 0 chr3 103981083 103983022 -55616761 - L1VL4 LINE L1 -1469 2090 111 9 1378 352 250 111 28 chr3 103983265 103983446 -55616337 + L1M5 LINE L1 4622 4817 -1329 9 1378 742 266 22 6 chr3 103983549 103983727 -55616056 + B3A SINE B2 2 182 -16 9 1378 720 249 71 0 chr3 103983768 103983965 -55615818 + B3 SINE B2 1 211 -5 9 1378 527 236 84 12 chr3 103984033 103984200 -55615583 + Charlie5 DNA MER1_type 2280 2458 -166 9 1378 271 225 56 0 chr3 103984214 103984285 -55615498 + PB1D10 SINE Alu 43 117 0 9 1378 301 250 162 0 chr3 103984301 103984437 -55615346 + Charlie5 DNA MER1_type 2467 2624 0 9 1378 807 339 137 7 chr3 103984552 103985006 -55614777 + L1MDb LINE L1 50 562 -5847 9 1378 850 264 62 48 chr3 103985026 103985523 -55614260 + L1MDb LINE L1 2587 3090 -3316 9 1378 446 309 37 68 chr3 103985543 103985706 -55614077 + B4 SINE B4 135 292 0 9 1378 538 219 199 20 chr3 103986751 103986999 -55612784 + Lx8 LINE L1 7179 7470 -3 9 1378 341 257 14 0 chr3 103987122 103987196 -55612587 + PB1D10 SINE Alu 13 87 -30 9 1378 227 228 17 17 chr3 103987206 103987264 -55612519 + GA-rich Low_complexity Low_complexity 3 60 0 9 1378 546 29 0 0 chr3 103987430 103987498 -55612285 + (TC)n Simple_repeat Simple_repeat 2 69 0 9 1378 823 262 46 35 chr3 103987675 103987936 -55611847 - L3 LINE CR1 -73 4416 4153 9 1378 798 263 198 49 chr3 103987953 103988123 -55611660 + MLT1D LTR MaLR 1 190 -315 9 1378 889 83 75 8 chr3 103988123 103988257 -55611526 + B1_Mus1 SINE Alu 1 143 -5 9 1378 798 263 198 49 chr3 103988257 103988285 -55611498 + MLT1D LTR MaLR 191 233 -272 9 1378 1377 149 18 0 chr3 103988285 103988506 -55611277 - URR1B DNA MER1_type 0 225 1 9 1378 798 263 198 49 chr3 103988506 103988634 -55611149 + MLT1D LTR MaLR 234 376 -129 9 1378 475 276 104 0 chr3 103988655 103988789 -55610994 - B1F SINE Alu -1 148 1 9 1378 328 324 80 33 chr3 103988789 103988801 -55610982 - B4A SINE B4 -62 226 74 9 1378 310 204 129 0 chr3 103988792 103988885 -55610898 + MLT1D LTR MaLR 401 505 0 9 1378 2961 88 0 16 chr3 103988929 103989368 -55610415 - L1_Mus4 LINE L1 0 6636 6205 9 1378 276 30 0 0 chr3 103989480 103989513 -55610270 + (TCTCTG)n Simple_repeat Simple_repeat 2 34 0 9 1378 672 78 10 19 chr3 103989542 103989646 -55610137 - RLTR11A2 LTR ERVK 0 527 425 9 1378 339 82 20 0 chr3 103989647 103989696 -55610087 + RLTR11A2 LTR ERVK 478 527 0 9 1378 402 286 123 6 chr3 103989878 103990040 -55609743 + B3A SINE B2 2 182 -16 9 1378 1016 241 15 10 chr3 103990059 103990264 -55609519 - B3 SINE B2 -7 209 4 9 1378 31 0 0 0 chr3 103990275 103990306 -55609477 + AT_rich Low_complexity Low_complexity 1 31 0 9 1378 1343 82 0 16 chr3 103990358 103990544 -55609239 + B2_Mm2 SINE B2 5 187 -8 9 1378 195 184 0 0 chr3 103990696 103990734 -55609049 + (TATATG)n Simple_repeat Simple_repeat 1 38 0 9 1378 202 300 0 0 chr3 103990830 103990880 -55608903 + (CATA)n Simple_repeat Simple_repeat 3 52 0 9 1378 1056 206 52 42 chr3 103990880 103991093 -55608690 - B4 SINE B4 -76 216 2 9 1378 319 284 49 0 chr3 103991464 103991566 -55608217 + PB1D7 SINE Alu 1 107 -13 9 1378 411 21 0 0 chr3 103992275 103992323 -55607460 + (TTCC)n Simple_repeat Simple_repeat 2 49 0 9 1378 396 257 94 19 chr3 103992808 103992990 -55606793 + L1ME1 LINE L1 6009 6334 0 9 1378 3040 230 95 12 chr3 103993215 103993982 -55605801 + Lx8 LINE L1 6317 7147 -326 9 1378 388 259 16 103 chr3 103993993 103994178 -55605605 + Lx8 LINE L1 7304 7472 -1 9 1378 404 190 511 0 chr3 103994187 103994326 -55605457 + B3 SINE B2 1 210 -6 9 1378 264 59 0 0 chr3 103994335 103994369 -55605414 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 9 1378 613 161 9 82 chr3 103994383 103994552 -55605231 - B1_Mus2 SINE Alu -1 146 13 9 1378 1138 81 0 0 chr3 103995768 103995916 -55603867 + B1_Mus1 SINE Alu 1 148 0 9 1378 409 289 85 26 chr3 103996508 103996661 -55603122 + RSINE1 SINE B4 4 165 0 9 1378 546 193 0 140 chr3 103996812 103996969 -55602814 - B1_Mur2 SINE Alu -13 136 2 9 1378 10233 10 0 0 chr3 103998151 104000000 -55599783 - L1Md_A LINE L1 0 6582 4734 9 1378 31252 11 3 17 chr3 104000000 104004564 -55595219 - L1Md_A LINE L1 -1150 4733 242 1 1378 873 73 0 8 chr3 104004873 104004998 -55594785 - B2_Mm2 SINE B2 -70 125 2 2 1378 21 36 0 0 chr3 104005003 104005031 -55594752 + AT_rich Low_complexity Low_complexity 1 28 0 3 1378 1781 219 82 29 chr3 104005101 104006018 -55593765 + RMER1A Other Other 1 657 -409 4 1378 270 210 0 0 chr3 104006016 104006078 -55593705 + L1ME2z LINE L1 6229 6290 -154 5 1378 205 289 148 67 chr3 104006082 104006305 -55593478 + L2 LINE L2 2523 2763 -656 6 1378 825 174 7 0 chr3 104006969 104007118 -55592665 - B1_Mur4 SINE Alu 0 150 1 7 1378 182 62 31 0 chr3 104007647 104007679 -55592104 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 8 1378 22 0 0 0 chr3 104009148 104009170 -55590613 + AT_rich Low_complexity Low_complexity 1 22 0 9 1378 186 225 0 0 chr3 104009348 104009388 -55590395 + MIR SINE MIR 36 75 -133 1 1378 508 264 62 0 chr3 104010860 104010989 -55588794 - ID_B1 SINE B4 -2 222 86 1 1378 30 21 0 21 chr3 104011096 104011120 -55588663 + AT_rich Low_complexity Low_complexity 1 24 0 1 1378 461 224 26 61 chr3 104011120 104011234 -55588549 + PB1D10 SINE Alu 1 110 -7 1 1378 30 21 0 21 chr3 104011234 104011257 -55588526 + AT_rich Low_complexity Low_complexity 1 23 0 1 1378 26 0 0 0 chr3 104011296 104011322 -55588461 + AT_rich Low_complexity Low_complexity 1 26 0 1 1378 3288 48 5 0 chr3 104011477 104011871 -55587912 - MTA_Mm LTR MaLR 0 396 1 1 1378 3180 49 2 15 chr3 104011895 104012306 -55587477 - L1Md_F2 LINE L1 0 6582 6177 1 1378 2003 123 205 6 chr3 104012390 104012741 -55587042 - MTC LTR MaLR 0 421 1 1 1378 563 296 89 5 chr3 104013210 104013400 -55586383 + B3 SINE B2 1 206 -10 1 1378 371 288 123 48 chr3 104013486 104013632 -55586151 - RSINE1 SINE B4 -5 160 4 2 1378 1240 41 0 7 chr3 104014318 104014466 -55585317 + B1_Mus1 SINE Alu 1 147 -1 2 1378 1994 156 72 35 chr3 104014799 104015203 -55584580 - MTD LTR MaLR 0 419 1 2 1378 341 209 15 0 chr3 104015325 104015392 -55584391 - RMER15 LTR ERVL -105 470 403 2 1378 1140 300 12 101 chr3 104015406 104015745 -55584038 - Lx8 LINE L1 -220 7253 6944 2 1378 375 23 0 0 chr3 104015745 104015789 -55583994 + (CA)n Simple_repeat Simple_repeat 2 45 0 2 1378 1140 300 12 101 chr3 104015789 104015934 -55583849 - Lx8 LINE L1 -530 6943 6812 2 1378 224 322 102 11 chr3 104017480 104017568 -55582215 - PB1D10 SINE Alu -21 96 1 2 1378 350 255 11 11 chr3 104018240 104018335 -55581448 + PB1D7 SINE Alu 5 99 -21 2 1378 2005 145 127 36 chr3 104018864 104019250 -55580533 + MTC LTR MaLR 1 421 0 2 1378 1111 46 26 7 chr3 104020424 104020577 -55579206 + L1Md_F3 LINE L1 6429 6584 0 2 1378 1321 97 118 0 chr3 104021921 104022116 -55577667 - URR1A DNA MER1_type -4 222 5 3 1378 277 222 0 53 chr3 104022493 104022569 -55577214 + GA-rich Low_complexity Low_complexity 5 76 0 3 1378 189 0 0 0 chr3 104023351 104023372 -55576411 + (TAAAAA)n Simple_repeat Simple_repeat 4 24 0 3 1378 48 113 0 0 chr3 104023914 104024144 -55575639 + GC_rich Low_complexity Low_complexity 1 230 0 3 1378 232 164 0 76 chr3 104024307 104024373 -55575410 + C-rich Low_complexity Low_complexity 4 64 0 3 1378 384 366 81 14 chr3 104026061 104026344 -55573439 - MLT1L LTR MaLR 0 610 309 3 1378 313 239 28 0 chr3 104026508 104026579 -55573204 - MLT1L LTR MaLR -534 76 4 3 1378 225 94 0 0 chr3 104026590 104026622 -55573161 + (T)n Simple_repeat Simple_repeat 1 32 0 3 1378 237 365 82 15 chr3 104026687 104026882 -55572901 + MIRb SINE MIR 45 252 -16 3 1378 845 202 17 6 chr3 104027572 104027746 -55572037 + B3A SINE B2 7 182 -16 3 1378 24 32 0 0 chr3 104027753 104027784 -55571999 + AT_rich Low_complexity Low_complexity 1 31 0 4 1378 22 56 0 0 chr3 104027951 104027987 -55571796 + AT_rich Low_complexity Low_complexity 1 36 0 4 1378 465 291 26 0 chr3 104028284 104028401 -55571382 + B1F SINE Alu 1 120 -29 4 1378 387 188 125 0 chr3 104028568 104028648 -55571135 + PB1 SINE Alu 31 120 -7 4 1378 345 191 16 0 chr3 104028667 104028730 -55571053 + ID4_ SINE ID 2 65 -18 4 1378 997 128 0 32 chr3 104028749 104028935 -55570848 + GA-rich Low_complexity Low_complexity 1 180 0 4 1378 558 295 39 24 chr3 104028982 104029187 -55570596 + B4A SINE B4 63 270 -22 4 1378 325 286 175 68 chr3 104029254 104029517 -55570266 + B4 SINE B4 2 292 0 4 1378 430 152 40 0 chr3 104029517 104029616 -55570167 + (CATA)n Simple_repeat Simple_repeat 3 105 0 4 1378 303 281 10 150 chr3 104031082 104031275 -55568508 + RMER30 DNA MER1_type 2 167 -35 4 1378 360 243 105 19 chr3 104031510 104031615 -55568168 + MER21B LTR ERV1 273 386 -477 5 1378 712 223 119 56 chr3 104031668 104031920 -55567863 + MER21B LTR ERV1 546 813 -50 5 1378 989 268 149 23 chr3 104032788 104033223 -55566560 + L1MA8 LINE L1 5351 5840 -451 5 1378 2117 175 85 5 chr3 104033223 104033613 -55566170 + MTC LTR MaLR 1 421 0 5 1378 807 161 17 6 chr3 104033633 104033808 -55565975 + GA-rich Low_complexity Low_complexity 2 178 0 5 1378 293 291 38 0 chr3 104033817 104033896 -55565887 + MLT1B LTR MaLR 282 363 -27 5 1378 241 283 152 0 chr3 104033895 104033987 -55565796 - ID_B1 SINE B4 -65 159 54 5 1378 204 244 122 0 chr3 104034084 104034166 -55565617 + L2a LINE L2 3056 3147 -279 5 1378 1964 159 92 13 chr3 104034289 104034671 -55565112 - MTC LTR MaLR -8 413 2 5 1378 26 30 0 0 chr3 104034841 104034874 -55564909 + AT_rich Low_complexity Low_complexity 1 33 0 5 1378 654 263 118 49 chr3 104035082 104035370 -55564413 + L1M5 LINE L1 5457 5764 -409 5 1378 272 305 0 12 chr3 104035374 104035457 -55564326 + B4 SINE B4 2 83 -209 6 1378 4158 116 92 28 chr3 104035474 104035767 -55564016 + RMER6A LTR ERVK 1 327 -429 6 1378 482 0 17 0 chr3 104035767 104035825 -55563958 + (GA)n Simple_repeat Simple_repeat 2 60 0 6 1378 4158 116 92 28 chr3 104035825 104036240 -55563543 + RMER6A LTR ERVK 328 753 -3 6 1378 204 158 0 0 chr3 104036269 104036307 -55563476 + (TG)n Simple_repeat Simple_repeat 1 38 0 6 1378 1016 128 7 7 chr3 104036345 104036494 -55563289 + B1_Mur4 SINE Alu 2 150 0 6 1378 469 268 50 7 chr3 104036978 104037117 -55562666 + B1F SINE Alu 5 149 0 6 1378 264 175 31 16 chr3 104037772 104037836 -55561947 - Tigger11a DNA MER2_type -397 338 274 6 1378 299 91 106 0 chr3 104038186 104038252 -55561531 - B3 SINE B2 0 216 144 6 1378 284 301 118 0 chr3 104038807 104038943 -55560840 - Tigger11a DNA MER2_type -117 618 467 6 1378 1369 253 18 51 chr3 104039396 104039788 -55559995 + MTE2a LTR MaLR 1 379 0 6 1378 308 335 76 20 chr3 104039881 104040079 -55559704 + MLT1A0 LTR MaLR 87 295 -70 7 1378 1462 139 124 7 chr3 104040130 104040405 -55559378 + ORR1B2 LTR MaLR 61 367 0 7 1378 336 314 69 37 chr3 104040441 104040659 -55559124 - MIR SINE MIR 0 262 38 7 1378 404 217 112 9 chr3 104040944 104041051 -55558732 - ID_B1 SINE B4 -9 215 98 7 1378 248 240 0 0 chr3 104041168 104041218 -55558565 + (TG)n Simple_repeat Simple_repeat 2 51 0 7 1378 1529 193 58 92 chr3 104042397 104042831 -55556952 - MTD LTR MaLR 0 419 1 7 1378 579 85 0 0 chr3 104043208 104043290 -55556493 + (TC)n Simple_repeat Simple_repeat 2 83 0 7 1378 598 231 43 156 chr3 104043527 104043783 -55556000 + MER2 DNA MER2_type 6 232 -113 7 1378 313 311 83 6 chr3 104044398 104044579 -55555204 + LTR33 LTR ERVL 19 213 -302 7 1378 3355 81 41 11 chr3 104045088 104045549 -55554234 - MT2C_Mm LTR ERVL 0 475 1 7 1378 254 219 44 0 chr3 104045581 104045657 -55554126 - ID4 SINE ID -68 84 2 8 1378 809 0 21 0 chr3 104045659 104045755 -55554028 + (GAAA)n Simple_repeat Simple_repeat 4 101 0 8 1378 457 256 110 16 chr3 104046353 104046480 -55553303 + RSINE1 SINE B4 19 157 -8 8 1378 439 280 132 7 chr3 104046628 104046772 -55553011 + RSINE1 SINE B4 4 165 0 8 1378 256 270 74 0 chr3 104046798 104046946 -55552837 - MER96B DNA hAT -69 348 190 8 1378 702 234 63 39 chr3 104047169 104047374 -55552409 - B3 SINE B2 -6 210 1 8 1378 321 26 0 0 chr3 104047550 104047588 -55552195 + (CTTG)n Simple_repeat Simple_repeat 2 39 0 8 1378 185 280 0 0 chr3 104048186 104048236 -55551547 + L2 LINE L2 2333 2382 -1037 8 1378 340 335 64 23 chr3 104048900 104049071 -55550712 - MIR SINE MIR -32 230 53 8 1378 180 152 0 0 chr3 104049390 104049423 -55550360 + CT-rich Low_complexity Low_complexity 3 35 0 8 1378 390 260 48 0 chr3 104049448 104049552 -55550231 - PB1D9 SINE Alu -7 113 5 9 1378 230 301 67 19 chr3 104049759 104049864 -55549919 - MER5A DNA MER1_type -49 140 31 9 1378 201 167 0 0 chr3 104049908 104049944 -55549839 + T-rich Low_complexity Low_complexity 1 36 0 9 1378 334 218 126 0 chr3 104050247 104050334 -55549449 + B1_Mur1 SINE Alu 52 149 0 9 1378 468 91 0 0 chr3 104050375 104050441 -55549342 + (TG)n Simple_repeat Simple_repeat 1 66 0 9 1378 22 70 0 0 chr3 104050581 104050624 -55549159 + AT_rich Low_complexity Low_complexity 1 43 0 9 1378 231 264 0 0 chr3 104050697 104050750 -55549033 + (TG)n Simple_repeat Simple_repeat 2 54 0 9 1378 240 35 0 0 chr3 104051261 104051290 -55548493 + (TG)n Simple_repeat Simple_repeat 2 30 0 9 1378 456 19 0 0 chr3 104051303 104051356 -55548427 + (CA)n Simple_repeat Simple_repeat 2 54 0 9 1378 897 233 122 8 chr3 104051365 104051620 -55548163 - B4 SINE B4 -8 284 1 9 1378 868 201 105 5 chr3 104052170 104052360 -55547423 + B3 SINE B2 1 209 -7 1 1378 651 244 6 19 chr3 104053864 104054023 -55545760 + MTD LTR MaLR 3 159 -260 1 1378 271 281 16 0 chr3 104054027 104054091 -55545692 + MTD LTR MaLR 265 329 -90 1 1378 615 27 0 0 chr3 104054154 104054227 -55545556 + (GA)n Simple_repeat Simple_repeat 2 74 0 1 1378 279 213 0 0 chr3 104054279 104054346 -55545437 + PB1 SINE Alu 49 126 -1 1 1378 451 261 61 12 chr3 104054998 104055161 -55544622 + L1MD3 LINE L1 7589 7759 -236 1 1378 821 231 40 53 chr3 104055244 104055472 -55544311 + B4A SINE B4 7 231 -61 1 1378 647 85 7 126 chr3 104055472 104055607 -55544176 + Lx LINE L1 6521 6639 -15 1 1378 189 0 0 0 chr3 104055607 104055628 -55544155 + (TAA)n Simple_repeat Simple_repeat 2 22 0 1 1378 988 149 0 0 chr3 104055638 104055786 -55543997 + B1_Mur2 SINE Alu 1 148 -1 1 1378 202 116 0 44 chr3 104055828 104055873 -55543910 + GA-rich Low_complexity Low_complexity 2 44 0 1 1378 26 30 0 0 chr3 104056052 104056085 -55543698 + AT_rich Low_complexity Low_complexity 1 33 0 1 1378 1460 46 6 0 chr3 104056139 104056312 -55543471 - B2_Mm1t SINE B2 -18 175 2 1 1378 753 106 0 0 chr3 104056500 104056613 -55543170 + (ATGGTG)n Simple_repeat Simple_repeat 3 115 0 1 1378 29 0 0 0 chr3 104057224 104057253 -55542530 + AT_rich Low_complexity Low_complexity 1 29 0 1 1378 797 253 0 29 chr3 104058230 104058401 -55541382 + B3 SINE B2 1 166 -50 1 1378 273 163 0 0 chr3 104058411 104058460 -55541323 + (TA)n Simple_repeat Simple_repeat 2 50 0 1 1378 2444 169 102 18 chr3 104058479 104058967 -55540816 - RLTR24 LTR ERV1 0 529 1 1 1378 189 0 0 0 chr3 104058990 104059011 -55540772 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 1 1378 862 304 15 11 chr3 104059019 104059292 -55540491 + B4A SINE B4 2 275 -17 1 1378 246 276 13 0 chr3 104059304 104059380 -55540403 + (CA)n Simple_repeat Simple_repeat 2 78 0 1 1378 308 291 0 12 chr3 104059439 104059519 -55540264 + ID4_ SINE ID 3 81 -2 1 1378 708 255 51 143 chr3 104059576 104060065 -55539718 + RLTR12B LTR ERVK 54 497 -31 1 1378 216 281 53 0 chr3 104060315 104060372 -55539411 - ID SINE ID -142 82 23 1 1378 273 223 10 21 chr3 104061641 104061737 -55538046 + GA-rich Low_complexity Low_complexity 1 95 0 1 1378 197 326 169 0 chr3 104061912 104062090 -55537693 - MIRb SINE MIR -38 230 23 1 1378 1919 216 17 3 chr3 104062329 104062691 -55537092 - ORR1D2 LTR MaLR 0 370 4 1 1378 503 189 0 8 chr3 104062713 104062836 -55536947 + (TCTA)n Simple_repeat Simple_repeat 3 124 0 1 1378 335 246 56 0 chr3 104063757 104063851 -55535932 - B1F1 SINE Alu -21 96 1 1 1378 343 313 82 7 chr3 104064266 104064401 -55535382 + L2c LINE L2 3242 3386 -1 1 1378 969 275 18 4 chr3 104065073 104065350 -55534433 + B4A SINE B4 2 282 -10 1 1378 498 286 29 23 chr3 104065404 104065576 -55534207 + B3 SINE B2 1 173 -43 1 1378 2094 272 87 70 chr3 104065963 104067317 -55532466 - L1MB2 LINE L1 -31 6140 4742 1 1378 899 182 0 0 chr3 104067985 104068122 -55531661 - B1_Mus1 SINE Alu -11 137 1 1 1378 403 267 95 15 chr3 104068221 104068358 -55531425 + Lx8 LINE L1 6974 7121 -352 1 1378 378 190 38 0 chr3 104068393 104068472 -55531311 + L1ME1 LINE L1 5408 5489 -685 1 1378 2701 178 177 15 chr3 104068463 104069068 -55530715 + RMER1B Other Other 364 1066 0 1 1378 1137 285 88 36 chr3 104069100 104069714 -55530069 + L1ME1 LINE L1 5518 6163 -16 1 1378 776 275 25 15 chr3 104069823 104070019 -55529764 + B3A SINE B2 1 198 0 1 1378 27 0 0 0 chr3 104070020 104070047 -55529736 + AT_rich Low_complexity Low_complexity 1 27 0 1 1378 852 239 5 25 chr3 104070053 104070255 -55529528 + B3A SINE B2 1 198 0 1 1378 1012 236 40 0 chr3 104070289 104070488 -55529295 + B3 SINE B2 1 207 -9 1 1378 1038 201 9 5 chr3 104070500 104070710 -55529073 + L1MB7 LINE L1 5479 5689 -495 1 1378 492 290 174 16 chr3 104070815 104071057 -55528726 + L1MB7 LINE L1 5841 6120 -64 1 1379 223 343 97 17 chr3 104071203 104071378 -55528405 - L3 LINE CR1 -737 3752 3564 1 1379 214 220 120 0 chr3 104072296 104072346 -55527437 + ID4_ SINE ID 26 81 -2 1 1379 273 213 53 0 chr3 104072426 104072501 -55527282 - MADE2 DNA Mariner -1 79 1 1 1379 862 223 71 5 chr3 104072595 104072793 -55526990 + B3 SINE B2 1 211 -5 1 1379 1413 99 0 5 chr3 104072947 104073139 -55526644 + B2_Mm2 SINE B2 1 191 -4 1 1379 28 29 0 0 chr3 104073262 104073297 -55526486 + AT_rich Low_complexity Low_complexity 1 35 0 1 1379 449 188 0 0 chr3 104073330 104073410 -55526373 - B3 SINE B2 -133 83 4 1 1379 375 218 26 0 chr3 104074085 104074163 -55525620 - ID_B1 SINE B4 -2 222 143 1 1379 4113 235 96 15 chr3 104074163 104075244 -55524539 - Lx9 LINE L1 -1 7643 6475 1 1379 735 190 78 0 chr3 104075258 104075400 -55524383 - ID_B1 SINE B4 -68 156 4 1 1379 189 333 30 0 chr3 104076876 104076942 -55522841 - MIR3 SINE MIR -51 157 90 1 1379 596 200 84 8 chr3 104077608 104077739 -55522044 - RSINE1 SINE B4 -23 142 2 1 1379 608 278 14 7 chr3 104077903 104078048 -55521735 - RSINE1 SINE B4 -18 147 2 1 1379 361 233 40 72 chr3 104078320 104078380 -55521403 + MTEb LTR MaLR 257 309 -70 1 1379 1639 31 0 20 chr3 104078380 104078575 -55521208 - B2_Mm1a SINE B2 -2 191 1 1 1379 361 233 40 72 chr3 104078575 104078639 -55521144 + MTEb LTR MaLR 310 377 -2 1 1379 234 234 31 15 chr3 104078755 104078820 -55520963 + MIR SINE MIR 81 146 -62 1 1379 213 121 0 0 chr3 104080012 104080045 -55519738 + (CTTG)n Simple_repeat Simple_repeat 2 34 0 1 1379 281 291 12 71 chr3 104080538 104080623 -55519160 - RSINE1 SINE B4 -33 132 53 1 1379 461 212 120 12 chr3 104080948 104081115 -55518668 - MER89 LTR ERV1 -23 536 352 1 1379 627 207 6 76 chr3 104081211 104081368 -55518415 - ID_B1 SINE B4 -14 210 65 1 1379 2663 141 69 6 chr3 104081396 104081873 -55517910 + RLTR20D LTR ERVK 1 494 -66 1 1379 273 321 115 9 chr3 104081992 104082209 -55517574 - MER89 LTR ERV1 -319 240 1 1 1379 267 54 0 0 chr3 104082370 104082407 -55517376 + (TG)n Simple_repeat Simple_repeat 1 37 0 1 1379 629 161 16 0 chr3 104082909 104083033 -55516750 + CT-rich Low_complexity Low_complexity 4 129 0 1 1379 873 174 14 0 chr3 104083122 104083266 -55516517 + B1_Mur2 SINE Alu 4 149 0 1 1379 203 0 37 0 chr3 104083268 104083295 -55516488 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 1 1379 243 0 0 0 chr3 104083418 104083445 -55516338 + (TC)n Simple_repeat Simple_repeat 2 28 0 1 1379 351 0 0 0 chr3 104083445 104083483 -55516300 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 1379 464 265 44 22 chr3 104083484 104083619 -55516164 - RSINE1 SINE B4 -20 145 8 1 1379 294 259 58 54 chr3 104083805 104083949 -55515834 + MIRb SINE MIR 21 163 -45 1 1379 189 273 172 52 chr3 104084022 104084138 -55515645 - MIR SINE MIR -96 166 37 1 1379 302 197 0 40 chr3 104084350 104084424 -55515359 + RMER15 LTR ERVL 2 72 -503 1 1379 1959 219 75 30 chr3 104084558 104085066 -55514717 + RMER15 LTR ERVL 27 557 -18 1 1379 309 51 0 0 chr3 104085083 104085122 -55514661 + (TGG)n Simple_repeat Simple_repeat 2 40 0 1 1379 212 292 15 30 chr3 104085123 104085190 -55514593 - ID4 SINE ID -13 70 5 1 1379 207 364 41 53 chr3 104086237 104086408 -55513375 + L3 LINE CR1 3124 3292 -1197 1 1379 678 276 98 20 chr3 104086679 104086934 -55512849 - MT2A LTR ERVL -10 523 249 1 1379 244 228 85 37 chr3 104086944 104087026 -55512757 - MTEa LTR MaLR -290 89 4 1 1379 516 227 62 0 chr3 104087025 104087153 -55512630 + RSINE1 SINE B4 1 136 -29 1 1379 837 86 0 0 chr3 104087162 104087290 -55512493 + (CATA)n Simple_repeat Simple_repeat 2 129 0 1 1379 612 263 86 0 chr3 104087297 104087472 -55512311 + B4A SINE B4 81 270 -22 1 1379 23 0 0 0 chr3 104087828 104087851 -55511932 + AT_rich Low_complexity Low_complexity 1 23 0 1 1379 310 301 9 0 chr3 104088035 104088148 -55511635 - L1M5 LINE L1 -313 5811 5698 1 1379 424 45 45 0 chr3 104088755 104088821 -55510962 + (CAAAA)n Simple_repeat Simple_repeat 3 71 0 1 1379 198 308 84 17 chr3 104089290 104089409 -55510374 - L2c LINE L2 -3 3384 3258 1 1379 3736 137 32 13 chr3 104089471 104090099 -55509684 + Lx2B LINE L1 6361 7000 0 1 1379 391 213 0 0 chr3 104090107 104090182 -55509601 + MTD LTR MaLR 345 419 0 1 1379 265 389 39 54 chr3 104090182 104090438 -55509345 - MLT1N2 LTR MaLR -304 258 7 1 1379 269 335 94 14 chr3 104090729 104090923 -55508860 - L2a LINE L2 -2 3424 3215 1 1379 378 0 0 0 chr3 104090923 104090965 -55508818 + (TG)n Simple_repeat Simple_repeat 1 42 0 1 1379 269 308 586 11 chr3 104090965 104091149 -55508634 - L2a LINE L2 -212 3214 2925 1 1379 1216 153 76 9 chr3 104091469 104091680 -55508103 + URR1B DNA MER1_type 1 225 0 1 1379 428 287 99 39 chr3 104091701 104091882 -55507901 + MER58A DNA MER1_type 27 218 -6 1 1379 1047 215 63 30 chr3 104092225 104092494 -55507289 + Lx3C LINE L1 6688 6965 -11 1 1379 375 173 0 0 chr3 104092515 104092596 -55507187 + (CAGG)n Simple_repeat Simple_repeat 2 82 0 1 1379 314 239 28 0 chr3 104092762 104092833 -55506950 - PB1D10 SINE Alu -1 116 44 1 1379 585 105 0 0 chr3 104093569 104093655 -55506128 + (TC)n Simple_repeat Simple_repeat 1 86 0 1 1379 387 0 0 0 chr3 104093658 104093701 -55506082 + (TG)n Simple_repeat Simple_repeat 1 43 0 1 1379 906 238 114 61 chr3 104093949 104094325 -55505458 + MTD LTR MaLR 10 405 -14 1 1379 3039 187 70 109 chr3 104094424 104094715 -55505068 - Lx9 LINE L1 -8 7636 7415 1 1379 4483 30 9 4 chr3 104094715 104095243 -55504540 - L1Md_F3 LINE L1 -1 6583 6053 1 1379 3039 187 70 109 chr3 104095243 104095821 -55503962 - Lx9 LINE L1 -230 7414 6801 1 1379 207 0 0 0 chr3 104096285 104096308 -55503475 + (A)n Simple_repeat Simple_repeat 1 23 0 1 1379 195 96 38 19 chr3 104096725 104096778 -55503005 + A-rich Low_complexity Low_complexity 2 55 0 1 1379 310 313 20 0 chr3 104096790 104096889 -55502894 - L4 LINE RTE -298 1731 1631 2 1379 741 234 41 0 chr3 104098222 104098297 -55501486 + ID SINE ID 2 83 -141 2 1379 375 303 37 0 chr3 104098297 104098406 -55501377 + PB1D10 SINE Alu 1 113 -4 2 1379 207 200 0 0 chr3 104099848 104099883 -55499900 + (CA)n Simple_repeat Simple_repeat 1 35 0 2 1379 513 255 27 33 chr3 104100485 104100635 -55499148 - RSINE1 SINE B4 -2 163 15 2 1379 249 258 0 16 chr3 104101356 104101419 -55498364 - L1MB8 LINE L1 -19 6159 6098 2 1379 462 248 85 52 chr3 104101425 104101678 -55498105 - L1MB8 LINE L1 -358 5815 5554 2 1379 538 228 73 0 chr3 104101678 104101801 -55497982 + RSINE1 SINE B4 3 134 -31 2 1379 257 329 117 52 chr3 104101850 104102081 -55497702 + Lx8 LINE L1 6992 7237 -236 2 1379 218 105 0 26 chr3 104102316 104102355 -55497428 + (GAAA)n Simple_repeat Simple_repeat 3 40 0 2 1379 242 232 25 96 chr3 104102451 104102599 -55497184 - MLT1J2 LTR MaLR -343 267 27 2 1379 257 255 73 73 chr3 104102667 104102781 -55497002 + PB1 SINE Alu 12 120 0 2 1379 937 268 85 9 chr3 104102833 104103149 -55496634 + L1MA4 LINE L1 5564 5903 -397 2 1379 767 152 6 0 chr3 104103472 104103650 -55496133 + CT-rich Low_complexity Low_complexity 2 180 0 2 1379 203 312 37 24 chr3 104103662 104103744 -55496039 - L3 LINE CR1 -112 4377 4295 2 1379 222 274 123 0 chr3 104104991 104105064 -55494719 - MIRb SINE MIR -168 100 19 2 1379 479 299 26 0 chr3 104105151 104105268 -55494515 + B1_Mur1 SINE Alu 17 136 -13 2 1379 203 324 0 14 chr3 104105270 104105342 -55494441 + G-rich Low_complexity Low_complexity 4 74 0 2 1379 198 0 0 0 chr3 104106442 104106464 -55493319 + (T)n Simple_repeat Simple_repeat 1 22 0 2 1379 354 329 3 0 chr3 104106512 104106627 -55493156 - ID_B1 SINE B4 -31 193 83 2 1379 458 311 153 46 chr3 104106682 104107062 -55492721 - MLT1F2 LTR MaLR -3 557 134 2 1379 441 0 0 0 chr3 104107062 104107111 -55492672 + (CA)n Simple_repeat Simple_repeat 1 49 0 2 1379 458 311 153 46 chr3 104107111 104107168 -55492615 - MLT1F2 LTR MaLR -427 133 74 2 1379 559 309 53 0 chr3 104107311 104107518 -55492265 + ID_B1 SINE B4 2 219 -5 2 1379 678 213 0 0 chr3 104107948 104108098 -55491685 + GA-rich Low_complexity Low_complexity 4 153 0 2 1379 237 250 93 93 chr3 104109040 104109137 -55490646 + RSINE1 SINE B4 16 112 -53 2 1379 1204 189 143 7 chr3 104109215 104109508 -55490275 + RMER5 LTR ERV1 1 333 -201 2 1379 1063 175 17 29 chr3 104109740 104109981 -55489802 + RMER5 LTR ERV1 297 534 0 2 1379 405 0 0 0 chr3 104111319 104111364 -55488419 + (TG)n Simple_repeat Simple_repeat 1 45 0 2 1379 259 246 14 58 chr3 104111733 104111802 -55487981 + ID2 SINE ID 17 82 -1 2 1379 206 83 56 0 chr3 104111935 104111971 -55487812 + (TCTCCC)n Simple_repeat Simple_repeat 3 40 0 2 1379 344 183 158 0 chr3 104111972 104112054 -55487729 - PB1D10 SINE Alu -5 112 18 2 1379 765 0 0 0 chr3 104112054 104112139 -55487644 + (TTC)n Simple_repeat Simple_repeat 2 86 0 2 1379 301 43 21 21 chr3 104112143 104112191 -55487592 + (TTTTG)n Simple_repeat Simple_repeat 5 52 0 2 1379 935 153 0 0 chr3 104112192 104112336 -55487447 - B1_Mur2 SINE Alu -5 144 1 2 1379 232 254 18 0 chr3 104114299 104114354 -55485429 + CT-rich Low_complexity Low_complexity 5 60 0 2 1379 767 203 58 117 chr3 104115456 104115635 -55484148 - B3 SINE B2 -6 210 35 2 1379 464 248 130 15 chr3 104115635 104115766 -55484017 - B1_Mm SINE Alu -1 146 1 2 1379 767 203 58 117 chr3 104115766 104115809 -55483974 - B3 SINE B2 -182 34 1 2 1379 1229 87 63 6 chr3 104116034 104116208 -55483575 - B2_Mm2 SINE B2 -8 187 4 2 1379 468 0 0 0 chr3 104116306 104116358 -55483425 + (TG)n Simple_repeat Simple_repeat 1 52 0 2 1379 434 225 18 18 chr3 104116726 104116839 -55482944 - PB1D10 SINE Alu -3 114 2 2 1379 279 292 149 0 chr3 104117274 104117435 -55482348 - MLT1H2 LTR MaLR -18 471 287 2 1379 794 39 0 10 chr3 104118125 104118228 -55481555 + (GAAA)n Simple_repeat Simple_repeat 3 104 0 2 1379 397 265 106 0 chr3 104118547 104118679 -55481104 + B1F SINE Alu 3 148 -1 2 1379 333 0 0 0 chr3 104119229 104119266 -55480517 + (TG)n Simple_repeat Simple_repeat 2 38 0 2 1379 327 49 0 0 chr3 104119266 104119306 -55480477 + (TA)n Simple_repeat Simple_repeat 2 42 0 2 1379 380 259 34 82 chr3 104119617 104119764 -55480019 - L1MB5 LINE L1 0 6174 6035 2 1379 630 254 95 0 chr3 104120723 104120892 -55478891 + ID_B1 SINE B4 7 191 -33 2 1379 207 0 0 0 chr3 104120935 104120958 -55478825 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2 1379 275 258 194 0 chr3 104121167 104121260 -55478523 + PB1D7 SINE Alu 1 111 -9 2 1379 260 309 53 36 chr3 104121929 104122050 -55477733 + MIRb SINE MIR 54 185 -83 2 1379 712 214 74 89 chr3 104122286 104122543 -55477240 - L1MA6 LINE L1 -6 6294 6042 2 1379 705 322 56 86 chr3 104122760 104123262 -55476521 + MLT1H2 LTR MaLR 1 487 -2 2 1379 360 0 0 0 chr3 104124148 104124188 -55475595 + (GA)n Simple_repeat Simple_repeat 1 40 0 2 1379 335 295 73 8 chr3 104124632 104124755 -55475028 + MLT1K LTR MaLR 451 581 -14 2 1379 238 175 0 0 chr3 104125941 104125981 -55473802 - MIRm SINE MIR -8 268 229 2 1379 223 269 104 0 chr3 104126176 104126243 -55473540 + ID4_ SINE ID 9 82 -1 2 1379 433 149 0 31 chr3 104126457 104126554 -55473229 + CT-rich Low_complexity Low_complexity 1 94 0 2 1379 720 294 0 0 chr3 104126568 104126731 -55473052 - B3A SINE B2 -35 163 1 2 1379 190 316 84 0 chr3 104127604 104127699 -55472084 - L2 LINE L2 -647 2772 2670 2 1379 214 362 50 14 chr3 104128195 104128335 -55471448 + MIRb SINE MIR 119 263 -5 2 1379 21 0 0 0 chr3 104128384 104128405 -55471378 + AT_rich Low_complexity Low_complexity 1 21 0 2 1379 292 304 0 0 chr3 104129979 104130094 -55469689 + (GTCTG)n Simple_repeat Simple_repeat 3 117 0 2 1379 222 37 0 0 chr3 104130423 104130450 -55469333 + (T)n Simple_repeat Simple_repeat 1 27 0 2 1379 405 0 0 0 chr3 104130883 104130928 -55468855 + (CA)n Simple_repeat Simple_repeat 1 45 0 2 1379 236 211 152 72 chr3 104131788 104131926 -55467857 + L1M5 LINE L1 5351 5499 -625 2 1379 265 268 86 99 chr3 104131970 104132202 -55467581 + L1M5 LINE L1 5581 5809 -315 2 1379 636 300 95 21 chr3 104132242 104132525 -55467258 - Lx8 LINE L1 -7 7466 7163 2 1379 301 326 58 86 chr3 104132527 104132819 -55466964 + B4A SINE B4 9 292 0 2 1379 697 138 144 15 chr3 104132828 104132960 -55466823 - B1_Mur4 SINE Alu -1 149 1 2 1379 250 321 12 12 chr3 104132994 104133076 -55466707 + ID4_ SINE ID 2 83 0 2 1379 24 32 0 0 chr3 104133113 104133144 -55466639 + AT_rich Low_complexity Low_complexity 1 31 0 2 1379 850 294 55 38 chr3 104133316 104133400 -55466383 + L1MD2 LINE L1 5417 5506 -853 2 1379 2327 88 21 59 chr3 104133400 104133740 -55466043 - ORR1A2 LTR MaLR 0 327 1 2 1379 850 294 55 38 chr3 104133740 104134073 -55465710 + L1MD2 LINE L1 5507 5840 -519 2 1379 384 22 0 0 chr3 104134458 104134503 -55465280 + (CA)n Simple_repeat Simple_repeat 2 46 0 2 1379 585 312 122 3 chr3 104134536 104134822 -55464961 + L1MD2 LINE L1 6014 6333 -26 2 1379 334 264 83 83 chr3 104134837 104134957 -55464826 + B1F SINE Alu 27 146 -3 2 1379 417 145 0 0 chr3 104135037 104135113 -55464670 + (TA)n Simple_repeat Simple_repeat 2 77 0 2 1379 2645 215 66 10 chr3 104135113 104135691 -55464092 + Lx8 LINE L1 6730 7339 -134 2 1379 657 266 41 0 chr3 104135691 104135860 -55463923 + B3A SINE B2 7 182 -16 2 1379 28 29 0 0 chr3 104135876 104135911 -55463872 + AT_rich Low_complexity Low_complexity 1 35 0 2 1379 733 209 78 0 chr3 104136096 104136249 -55463534 + RSINE1 SINE B4 1 165 0 2 1379 205 88 29 0 chr3 104139103 104139137 -55460646 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 2 1379 501 263 51 32 chr3 104139462 104139619 -55460164 - ID_B1 SINE B4 -62 162 3 2 1379 278 87 0 21 chr3 104139691 104139738 -55460045 + (TG)n Simple_repeat Simple_repeat 1 46 0 2 1379 531 302 7 7 chr3 104139738 104139878 -55459905 - RSINE1 SINE B4 -24 141 2 2 1379 433 302 189 11 chr3 104139960 104140151 -55459632 + MER45C DNA Tip100 729 953 0 2 1379 297 0 0 0 chr3 104140239 104140272 -55459511 + (A)n Simple_repeat Simple_repeat 1 33 0 2 1379 315 0 0 0 chr3 104141160 104141195 -55458588 + (TG)n Simple_repeat Simple_repeat 1 35 0 2 1379 315 164 0 0 chr3 104142132 104142193 -55457590 + C-rich Low_complexity Low_complexity 1 61 0 2 1379 575 330 64 48 chr3 104142200 104142760 -55457023 - L2 LINE L2 -362 3057 2489 2 1379 770 249 99 19 chr3 104143284 104143497 -55456286 + B4 SINE B4 1 230 -62 2 1379 286 260 8 48 chr3 104143707 104143814 -55455969 + MLT1A1 LTR MaLR 258 402 -6 2 1379 360 383 71 42 chr3 104143814 104144054 -55455729 + LTR78 LTR ERV1 348 594 -710 2 1379 688 137 122 0 chr3 104144143 104144274 -55455509 + B1_Mur1 SINE Alu 2 148 -1 2 1379 300 291 150 61 chr3 104144305 104144631 -55455152 + LTR78 LTR ERV1 743 1097 -207 2 1379 724 301 32 18 chr3 104144973 104145250 -55454533 + MER2 DNA MER2_type 1 281 -64 2 1379 198 283 0 0 chr3 104145295 104145341 -55454442 - MIR SINE MIR -75 187 142 2 1379 29 0 0 0 chr3 104145725 104145754 -55454029 + GC_rich Low_complexity Low_complexity 1 29 0 2 1379 478 67 27 0 chr3 104145832 104145907 -55453876 + (TAGA)n Simple_repeat Simple_repeat 2 78 0 2 1379 403 222 55 14 chr3 104145962 104146108 -55453675 + (TAGA)n Simple_repeat Simple_repeat 1 152 0 2 1379 1013 329 48 43 chr3 104146120 104146727 -55453056 + L1MC3 LINE L1 5440 6049 -1833 2 1379 24 0 0 0 chr3 104146766 104146790 -55452993 + AT_rich Low_complexity Low_complexity 1 24 0 2 1379 683 243 0 7 chr3 104146826 104146971 -55452812 + RSINE1 SINE B4 2 145 -20 2 1379 180 77 0 0 chr3 104146971 104146997 -55452786 + (CA)n Simple_repeat Simple_repeat 1 26 0 2 1379 1062 275 117 18 chr3 104147125 104147562 -55452221 + L1MC3 LINE L1 6499 6943 -1018 2 1379 612 260 45 26 chr3 104147597 104147751 -55452032 - RSINE1 SINE B4 -1 164 8 2 1379 255 293 194 18 chr3 104147803 104147973 -55451810 + L1MC3 LINE L1 7079 7278 -507 2 1379 474 18 0 0 chr3 104148097 104148152 -55451631 + (CA)n Simple_repeat Simple_repeat 2 56 0 2 1379 438 271 19 0 chr3 104148229 104148336 -55451447 + L1MC3 LINE L1 7262 7370 -415 2 1379 266 146 0 0 chr3 104148362 104148410 -55451373 + ID SINE ID 3 50 -174 3 1379 311 263 13 0 chr3 104148427 104148503 -55451280 + B4 SINE B4 1 77 -215 3 1379 266 266 112 41 chr3 104148503 104148525 -55451258 + B2_Mm2 SINE B2 1 105 -90 3 1379 1784 147 6 52 chr3 104148580 104148924 -55450859 + ORR1A4 LTR MaLR 1 328 -1 3 1379 775 249 97 69 chr3 104149022 104149384 -55450399 + RMER13A LTR ERVK 95 466 -394 3 1379 352 237 40 0 chr3 104149933 104150009 -55449774 + RSINE1 SINE B4 4 82 -83 3 1379 1122 210 10 0 chr3 104150099 104150304 -55449479 + B3 SINE B2 2 208 -8 3 1379 377 275 107 14 chr3 104150368 104150508 -55449275 + L1MC5 LINE L1 6623 6775 -1186 3 1379 602 203 38 38 chr3 104150797 104150930 -55448853 + B1_Mur1 SINE Alu 1 133 -16 3 1379 844 152 18 3 chr3 104150932 104151209 -55448574 + GA-rich Low_complexity Low_complexity 1 280 0 3 1379 707 239 94 20 chr3 104151214 104151415 -55448368 + B3 SINE B2 1 216 0 3 1379 524 254 111 26 chr3 104151713 104151939 -55447844 + L1MC5 LINE L1 7274 7518 -443 3 1379 583 276 0 0 chr3 104151944 104152089 -55447694 + MTEa LTR MaLR 1 145 -234 3 1379 488 304 0 0 chr3 104152349 104152474 -55447309 + ID_B1 SINE B4 77 201 -23 3 1379 23 0 0 0 chr3 104152789 104152812 -55446971 + AT_rich Low_complexity Low_complexity 1 23 0 3 1379 516 121 65 65 chr3 104152970 104153094 -55446689 - URR1B DNA MER1_type -6 219 96 3 1379 821 253 37 5 chr3 104154951 104155138 -55444645 + B3A SINE B2 6 198 0 3 1379 507 259 34 48 chr3 104155148 104155294 -55444489 - B1_Mur1 SINE Alu 0 149 6 3 1379 417 177 26 0 chr3 104155327 104155440 -55444343 + (TAGA)n Simple_repeat Simple_repeat 2 117 0 3 1379 665 280 13 13 chr3 104155450 104155609 -55444174 + RSINE1 SINE B4 3 161 -4 3 1379 253 331 0 82 chr3 104155609 104155657 -55444126 + B2_Mm2 SINE B2 2 191 -4 3 1379 376 273 60 89 chr3 104157591 104157872 -55441911 - ORR1E LTR MaLR -33 326 54 3 1379 213 125 54 0 chr3 104157876 104157932 -55441851 + CT-rich Low_complexity Low_complexity 1 59 0 3 1379 288 294 66 33 chr3 104157932 104158115 -55441668 + L2 LINE L2 2660 2848 -571 3 1379 274 260 151 0 chr3 104158224 104158297 -55441486 + L1MC LINE L1 3918 4001 -2145 3 1379 431 100 0 14 chr3 104158342 104158413 -55441370 + (TA)n Simple_repeat Simple_repeat 1 70 0 3 1379 608 195 143 14 chr3 104158423 104158577 -55441206 - B3A SINE B2 -36 180 9 3 1379 1708 134 66 21 chr3 104159018 104159451 -55440332 - RMER17C LTR ERVK -519 439 16 3 1379 838 256 60 24 chr3 104159659 104159911 -55439872 + B4A SINE B4 5 265 -27 3 1379 266 291 48 19 chr3 104160360 104160465 -55439318 - L1MC3 LINE L1 -82 7703 7596 3 1379 289 266 165 0 chr3 104160476 104160555 -55439228 - L1MC3 LINE L1 -308 7477 7386 3 1379 950 113 144 11 chr3 104161307 104161495 -55438288 + MTC LTR MaLR 201 413 -8 3 1379 334 306 28 9 chr3 104162000 104162109 -55437674 + B4A SINE B4 107 217 -75 3 1379 567 264 34 14 chr3 104162167 104162313 -55437470 + B1F2 SINE Alu 1 149 0 3 1379 741 249 81 29 chr3 104162337 104162610 -55437173 + B4 SINE B4 1 287 -5 3 1379 288 0 0 0 chr3 104163176 104163208 -55436575 + (TG)n Simple_repeat Simple_repeat 2 33 0 3 1379 307 217 29 0 chr3 104163346 104163415 -55436368 - ID4_ SINE ID -11 72 2 3 1379 378 0 0 0 chr3 104163425 104163467 -55436316 + (TTG)n Simple_repeat Simple_repeat 2 43 0 3 1379 211 152 0 42 chr3 104164390 104164438 -55435345 - L2a LINE L2 0 3426 3381 3 1379 1073 219 5 27 chr3 104164784 104165005 -55434778 + B3 SINE B2 1 216 0 3 1379 458 248 51 8 chr3 104165304 104165422 -55434361 + B1F SINE Alu 6 128 -21 3 1379 265 200 0 78 chr3 104165439 104165542 -55434241 + (GGGTG)n Simple_repeat Simple_repeat 5 99 0 3 1379 349 359 40 25 chr3 104165542 104165842 -55433941 - MLT2D LTR ERVL -73 324 10 3 1379 207 0 0 0 chr3 104166440 104166463 -55433320 + (CA)n Simple_repeat Simple_repeat 1 23 0 3 1379 361 266 7 7 chr3 104167019 104167174 -55432609 + (CA)n Simple_repeat Simple_repeat 2 156 0 3 1379 21 0 0 0 chr3 104167776 104167797 -55431986 + AT_rich Low_complexity Low_complexity 1 21 0 3 1379 397 287 56 49 chr3 104167946 104168089 -55431694 + MLT1G3 LTR MaLR 1 144 -451 3 1379 557 353 135 13 chr3 104168140 104168444 -55431339 + MLT1G3 LTR MaLR 247 587 -8 3 1379 432 314 36 46 chr3 104168578 104168772 -55431011 - MER117 DNA MER1_type 0 197 6 3 1379 358 232 23 58 chr3 104170060 104170147 -55429636 + B3A SINE B2 40 123 -75 3 1379 222 37 0 0 chr3 104170152 104170179 -55429604 + (CATA)n Simple_repeat Simple_repeat 4 30 0 3 1379 369 250 125 0 chr3 104170293 104170373 -55429410 + B4A SINE B4 1 90 -202 3 1379 1052 276 48 50 chr3 104170580 104170957 -55428826 - Tigger15a DNA TcMar -89 626 251 3 1379 361 321 141 84 chr3 104171129 104171568 -55428215 + MLT1M LTR MaLR 2 465 -207 3 1379 384 293 24 24 chr3 104171856 104171982 -55427801 + LTR90A LTR LTR 448 573 -403 3 1379 225 232 130 0 chr3 104172298 104172367 -55427416 + LTR90A LTR LTR 881 958 -18 3 1379 1004 122 0 0 chr3 104172639 104172778 -55427005 + B1_Mur4 SINE Alu 1 139 -11 3 1379 564 181 32 0 chr3 104172819 104172913 -55426870 + RSINE1 SINE B4 11 107 -58 3 1379 422 260 0 10 chr3 104173067 104173164 -55426619 - PB1D10 SINE Alu -9 108 13 3 1379 186 43 0 0 chr3 104173212 104173235 -55426548 + (TAA)n Simple_repeat Simple_repeat 2 24 0 3 1379 2945 99 5 15 chr3 104173429 104173840 -55425943 - MTB_Mm LTR MaLR 0 407 1 3 1379 6132 132 114 30 chr3 104173840 104175000 -55424783 - MTB_Mm-int LTR MaLR 0 1258 2 3 1379 2917 94 5 31 chr3 104175000 104175417 -55424366 - MTB_Mm LTR MaLR 0 407 1 3 1379 219 255 303 50 chr3 104175755 104175854 -55423929 - PB1 SINE Alu -3 124 1 3 1379 632 297 63 19 chr3 104175905 104176111 -55423672 + B4A SINE B4 11 225 -67 3 1379 429 20 0 0 chr3 104176182 104176232 -55423551 + (TC)n Simple_repeat Simple_repeat 1 50 0 3 1379 270 0 0 0 chr3 104176232 104176261 -55423522 + (CA)n Simple_repeat Simple_repeat 1 30 0 3 1379 343 283 181 47 chr3 104176528 104176721 -55423062 - RMER15 LTR ERVL -10 565 347 3 1379 309 125 0 0 chr3 104176984 104177032 -55422751 - RMER1B Other Other -217 849 802 3 1379 941 133 171 0 chr3 104177026 104177207 -55422576 + RMER1B Other Other 841 1052 -14 3 1379 445 296 91 57 chr3 104177211 104177476 -55422307 - L1MC5 LINE L1 -376 7585 7312 3 1379 196 104 62 0 chr3 104177735 104177783 -55422000 + (TGGG)n Simple_repeat Simple_repeat 1 51 0 3 1379 356 176 247 0 chr3 104178265 104178350 -55421433 + B1F SINE Alu 8 113 -36 3 1379 332 221 279 0 chr3 104178350 104178369 -55421414 + ID_B1 SINE B4 89 221 -3 3 1379 203 268 18 0 chr3 104178410 104178466 -55421317 + (CA)n Simple_repeat Simple_repeat 2 58 0 3 1379 199 367 0 0 chr3 104179067 104179142 -55420641 + MIR SINE MIR 76 147 -61 3 1379 237 86 57 0 chr3 104179155 104179190 -55420593 - MurSatRep1 Unknown Unknown -1861 276 240 3 1379 473 210 84 94 chr3 104179496 104179726 -55420057 + L1MD2 LINE L1 5880 6118 -241 3 1379 250 95 24 0 chr3 104179849 104179891 -55419892 + L1MD3 LINE L1 7938 7980 -15 3 1379 280 294 140 22 chr3 104179936 104180207 -55419576 - HAL1 LINE L1 -356 2151 1849 3 1379 308 89 0 0 chr3 104180881 104180926 -55418857 + L1_Mus4 LINE L1 6250 6294 -342 3 1379 2515 66 55 11 chr3 104180931 104181297 -55418486 + L1_Mus4 LINE L1 6254 6635 -1 3 1379 514 275 63 23 chr3 104182174 104182349 -55417434 + B3A SINE B2 1 182 -16 3 1379 255 308 7 145 chr3 104182525 104182677 -55417106 - LTR90A LTR LTR -47 929 799 3 1379 260 221 78 0 chr3 104183368 104183445 -55416338 - PB1D10 SINE Alu -1 116 34 3 1379 293 288 86 33 chr3 104183491 104183642 -55416141 - HAL1 LINE L1 -2347 160 2 3 1379 923 166 150 0 chr3 104184204 104184391 -55415392 - B3 SINE B2 0 216 2 3 1379 1116 253 47 78 chr3 104184861 104185182 -55414601 + MTEb LTR MaLR 13 323 -56 3 1379 320 203 31 0 chr3 104185202 104185266 -55414517 + MTEb LTR MaLR 314 379 0 3 1379 928 65 0 0 chr3 104185439 104185450 -55414333 - B1_Mus1 SINE Alu 0 148 138 3 1379 324 48 0 0 chr3 104185450 104185492 -55414291 + (TTTG)n Simple_repeat Simple_repeat 3 44 0 3 1379 928 65 0 0 chr3 104185492 104185603 -55414180 - B1_Mus1 SINE Alu -11 137 27 3 1379 877 222 91 0 chr3 104186024 104186222 -55413561 - B3 SINE B2 0 216 1 3 1379 279 282 79 35 chr3 104186424 104186538 -55413245 - PB1D7 SINE Alu 0 120 2 3 1379 262 220 21 62 chr3 104186544 104186641 -55413142 + C-rich Low_complexity Low_complexity 4 96 0 3 1379 285 261 30 13 chr3 104187300 104187424 -55412359 - MIRm SINE MIR -114 162 30 3 1379 242 0 61 0 chr3 104187508 104187541 -55412242 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 3 1379 1025 255 0 0 chr3 104188747 104188943 -55410840 + B3 SINE B2 14 209 -7 3 1379 269 135 19 0 chr3 104190228 104190280 -55409503 + CT-rich Low_complexity Low_complexity 2 54 0 3 1379 326 194 16 0 chr3 104190338 104190400 -55409383 - B1F SINE Alu -84 65 3 3 1379 956 248 19 0 chr3 104190420 104190626 -55409157 - B3 SINE B2 -3 213 4 3 1379 25 51 0 0 chr3 104190998 104191037 -55408746 + AT_rich Low_complexity Low_complexity 1 39 0 3 1379 260 353 36 36 chr3 104191972 104192110 -55407673 - MIRb SINE MIR -15 253 116 3 1379 496 194 29 19 chr3 104192967 104193072 -55406711 + ERVL-int LTR ERVL 5055 5160 -597 3 1379 807 233 94 11 chr3 104193527 104193718 -55406065 + B3 SINE B2 1 207 -9 3 1379 296 299 157 20 chr3 104194627 104194825 -55404958 - MIRb SINE MIR -21 247 23 3 1379 1537 210 143 116 chr3 104195633 104196103 -55403680 + MT2A LTR ERVL 1 487 -46 3 1379 809 96 8 0 chr3 104196103 104196228 -55403555 + (TAGA)n Simple_repeat Simple_repeat 2 127 0 3 1379 1537 210 143 116 chr3 104196228 104196275 -55403508 + MT2A LTR ERVL 488 532 -1 3 1379 520 254 8 54 chr3 104196498 104196627 -55403156 + MTEa LTR MaLR 1 123 -256 3 1379 1506 246 37 3 chr3 104196827 104197181 -55402602 - ORR1D2 LTR MaLR 0 370 5 4 1379 195 234 64 0 chr3 104197473 104197520 -55402263 + L2c LINE L2 3337 3386 -1 4 1379 1381 47 65 0 chr3 104197944 104198114 -55401669 - B2_Mm2 SINE B2 -14 181 1 4 1379 4340 265 90 77 chr3 104198126 104199507 -55400276 + MTEb-int LTR MaLR 143 1542 -38 4 1379 1305 87 5 16 chr3 104199507 104199694 -55400089 + B2_Mm2 SINE B2 1 185 -10 4 1379 4340 265 90 77 chr3 104199694 104199729 -55400054 + MTEb-int LTR MaLR 1543 1577 -3 4 1379 731 226 178 10 chr3 104199729 104199926 -55399857 + MTEb LTR MaLR 4 233 -146 4 1379 827 233 67 5 chr3 104201087 104201281 -55398502 - B3 SINE B2 -4 212 7 4 1379 252 0 0 0 chr3 104201306 104201334 -55398449 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 4 1379 425 282 72 51 chr3 104201343 104201619 -55398164 + B4A SINE B4 2 283 -9 4 1379 399 113 0 0 chr3 104202150 104202212 -55397571 + (TC)n Simple_repeat Simple_repeat 1 62 0 4 172 309 235 58 48 chr3 104202219 104202322 -55397461 - PB1D10 SINE Alu -13 104 1 4 1380 371 306 57 61 chr3 104202334 104202519 -55397264 + ORR1D2 LTR MaLR 28 205 -165 4 1380 450 0 0 0 chr3 104203010 104203060 -55396723 + (TCCA)n Simple_repeat Simple_repeat 2 51 0 4 1380 339 25 0 0 chr3 104203083 104203123 -55396660 + (TG)n Simple_repeat Simple_repeat 1 40 0 4 1380 1427 224 69 31 chr3 104203609 104203959 -55395824 + MLT1B LTR MaLR 28 390 0 4 1380 1123 209 61 18 chr3 104204299 104204528 -55395255 + B4A SINE B4 8 246 -46 4 1380 472 244 130 37 chr3 104204509 104204598 -55395185 + B4A SINE B4 116 222 -70 4 1380 825 114 0 0 chr3 104204598 104204730 -55395053 + (CATA)n Simple_repeat Simple_repeat 3 134 0 4 1380 472 244 130 37 chr3 104204730 104204802 -55394981 + B4A SINE B4 223 292 0 4 1380 23 0 0 0 chr3 104205563 104205586 -55394197 + AT_rich Low_complexity Low_complexity 1 23 0 4 1380 742 247 51 46 chr3 104205588 104205783 -55394000 - B3A SINE B2 -2 196 1 4 1380 271 235 12 36 chr3 104205948 104206032 -55393751 - L1M5 LINE L1 -239 5885 5804 4 1380 266 50 25 0 chr3 104206127 104206167 -55393616 + (CCCCCT)n Simple_repeat Simple_repeat 4 44 0 4 1380 285 385 39 39 chr3 104207077 104207280 -55392503 - MIRb SINE MIR -15 253 51 4 1380 432 258 43 0 chr3 104207280 104207409 -55392374 + B1F SINE Alu 6 141 -8 4 1380 540 302 24 65 chr3 104207418 104207588 -55392195 + RSINE1 SINE B4 2 164 -1 4 1380 255 253 139 0 chr3 104207804 104207883 -55391900 + MLT1J LTR MaLR 32 121 -391 4 1380 801 216 6 13 chr3 104208930 104209112 -55390671 - MTEa LTR MaLR 0 379 154 4 1380 252 353 26 8 chr3 104209106 104209223 -55390560 - MT2A LTR ERVL -403 130 12 4 1380 207 0 0 0 chr3 104210166 104210189 -55389594 + (CA)n Simple_repeat Simple_repeat 1 23 0 4 1380 3787 14 121 0 chr3 104210226 104210666 -55389117 + MT2_Mm LTR ERVL 1 493 0 4 1380 1490 229 90 28 chr3 104210681 104211036 -55388747 + MTEa LTR MaLR 1 377 -2 4 1380 369 265 0 0 chr3 104211097 104211180 -55388603 + ID4 SINE ID 1 83 0 4 1380 1570 289 125 9 chr3 104211197 104212199 -55387584 + Arthur1B DNA Tip100 100 1224 -1 4 1380 249 254 159 26 chr3 104213901 104214014 -55385769 + L2a LINE L2 3288 3415 -11 4 1380 453 235 8 25 chr3 104214325 104214447 -55385336 + PB1D7 SINE Alu 1 120 0 4 1380 250 314 29 0 chr3 104215113 104215183 -55384600 + L2c LINE L2 3256 3327 -60 4 1380 195 100 0 0 chr3 104215285 104215315 -55384468 + (GA)n Simple_repeat Simple_repeat 1 30 0 4 1380 213 146 0 24 chr3 104215409 104215451 -55384332 + GA-rich Low_complexity Low_complexity 1 41 0 4 1380 230 95 0 23 chr3 104215487 104215530 -55384253 + (TG)n Simple_repeat Simple_repeat 2 43 0 4 1380 297 233 33 0 chr3 104215540 104215600 -55384183 - ID4_ SINE ID -20 63 2 4 1380 1089 82 18 30 chr3 104215761 104215925 -55383858 + B2_Mm2 SINE B2 1 162 -33 4 1380 180 0 0 0 chr3 104215925 104215945 -55383838 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 4 1380 729 146 0 0 chr3 104215950 104216087 -55383696 + (GGAA)n Simple_repeat Simple_repeat 2 138 0 4 1380 239 255 138 0 chr3 104216877 104216971 -55382812 + L1M5 LINE L1 5760 5866 -296 4 1380 454 282 80 8 chr3 104216981 104217106 -55382677 + B1F SINE Alu 3 136 -13 4 1380 3271 55 8 0 chr3 104217113 104217510 -55382273 - MTB LTR MaLR 0 400 1 4 1380 1819 215 119 35 chr3 104217512 104218033 -55381750 - RLTR20B3 LTR ERVK -1 576 12 4 1380 1408 253 65 15 chr3 104218108 104218433 -55381350 - MER70B LTR ERVL -146 432 92 4 1380 1482 229 56 64 chr3 104218522 104218895 -55380888 - MTEa LTR MaLR -9 370 1 4 1380 3124 247 43 44 chr3 104218900 104219131 -55380652 - MTEa-int LTR MaLR -5 1575 1352 4 1380 630 202 168 24 chr3 104219131 104219298 -55380485 + B3A SINE B2 2 192 -6 4 1380 3124 247 43 44 chr3 104219298 104219859 -55379924 - MTEa-int LTR MaLR -229 1351 784 4 1380 500 46 0 0 chr3 104219831 104219896 -55379887 + B2_Mm1t SINE B2 122 186 -7 4 1380 276 284 68 0 chr3 104219911 104219999 -55379784 - MIRc SINE MIR -114 154 61 4 1380 2713 166 15 46 chr3 104220020 104220563 -55379220 + RLTR31_Mur LTR ERVK 5 537 -16 4 1380 572 182 94 16 chr3 104220816 104220944 -55378839 - B1_Mur2 SINE Alu 0 149 12 4 1380 22 80 0 0 chr3 104221176 104221226 -55378557 + AT_rich Low_complexity Low_complexity 1 50 0 4 1380 22 0 0 0 chr3 104221419 104221441 -55378342 + AT_rich Low_complexity Low_complexity 1 22 0 4 1380 380 224 194 0 chr3 104222617 104222715 -55377068 + B1F SINE Alu 3 119 -30 4 1380 868 167 12 12 chr3 104222720 104222965 -55376818 + GA-rich Low_complexity Low_complexity 1 245 0 4 1380 212 326 221 0 chr3 104222972 104223067 -55376716 + MIRm SINE MIR 40 155 -121 4 1380 330 292 191 72 chr3 104223310 104223561 -55376222 - RMER15 LTR ERVL -22 553 273 4 1380 518 231 91 0 chr3 104224200 104224321 -55375462 + RSINE1 SINE B4 12 143 -22 4 1380 359 98 16 0 chr3 104224323 104224384 -55375399 + (CA)n Simple_repeat Simple_repeat 1 62 0 4 1380 332 323 340 11 chr3 104225191 104225456 -55374327 - MLT1F LTR MaLR -196 352 1 4 1380 3275 29 39 0 chr3 104226073 104226454 -55373329 + MTA_Mm LTR MaLR 1 396 0 4 1380 7702 59 42 71 chr3 104226454 104227584 -55372199 + MTA_Mm-int LTR MaLR 1 1098 0 4 1380 3447 35 5 0 chr3 104227584 104227978 -55371805 + MTA_Mm LTR MaLR 1 396 0 4 1380 24 32 0 0 chr3 104228266 104228297 -55371486 + AT_rich Low_complexity Low_complexity 1 31 0 4 1380 927 160 14 0 chr3 104229098 104229242 -55370541 + B1_Mus1 SINE Alu 3 148 0 4 1380 928 284 119 25 chr3 104229337 104229691 -55370092 + MLT1C LTR MaLR 69 455 -12 4 1380 206 220 17 0 chr3 104230168 104230227 -55369556 + GA-rich Low_complexity Low_complexity 1 60 0 4 1380 1029 297 45 10 chr3 104230283 104230770 -55369013 + L1MB4 LINE L1 2563 3066 -3080 4 1380 447 188 59 51 chr3 104230789 104230894 -55368889 + PB1D9 SINE Alu 1 108 -12 4 1380 225 0 0 0 chr3 104230894 104230919 -55368864 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 4 1380 447 188 59 51 chr3 104230919 104230931 -55368852 + PB1D9 SINE Alu 109 119 -1 4 1380 704 279 49 56 chr3 104230980 104231284 -55368499 - RMER10A LTR ERVL -18 424 123 4 1380 381 236 35 129 chr3 104231294 104231464 -55368319 - RMER10A LTR ERVL -288 154 1 4 1380 550 174 10 10 chr3 104231464 104231553 -55368230 + PB1 SINE Alu 37 125 -2 4 1380 846 160 0 0 chr3 104231553 104231703 -55368080 + GA-rich Low_complexity Low_complexity 3 152 0 4 1380 1177 292 126 7 chr3 104231721 104232331 -55367452 + L1MB4 LINE L1 3073 3743 -2403 4 1380 962 222 19 9 chr3 104232331 104232545 -55367238 + B3 SINE B2 1 216 0 4 1380 602 241 78 0 chr3 104232563 104232704 -55367079 - RSINE1 SINE B4 -10 155 4 4 1380 673 241 168 18 chr3 104232704 104232924 -55366859 + MER44A DNA MER2_type 86 338 -1 4 1380 402 21 0 0 chr3 104232982 104233029 -55366754 + (TG)n Simple_repeat Simple_repeat 2 48 0 4 1380 513 280 129 63 chr3 104233032 104233287 -55366496 - B4A SINE B4 -20 272 1 4 1380 1498 221 140 19 chr3 104233342 104233827 -55365956 - RCHARR1 DNA MER1_type 0 974 431 4 1380 511 284 95 17 chr3 104233824 104234003 -55365780 - RCHARR1 DNA MER1_type -779 195 3 4 1380 255 331 93 7 chr3 104234048 104234188 -55365595 + L1MC1 LINE L1 6100 6251 -82 4 1380 284 258 75 85 chr3 104234282 104234346 -55365437 + RSINE1 SINE B4 61 128 -37 4 1380 189 107 0 0 chr3 104234346 104234374 -55365409 + (CA)n Simple_repeat Simple_repeat 2 29 0 4 1380 284 258 75 85 chr3 104234374 104234415 -55365368 + RSINE1 SINE B4 129 165 0 4 1380 718 231 7 14 chr3 104234599 104234744 -55365039 + RSINE1 SINE B4 2 145 -20 4 1380 234 128 0 0 chr3 104235690 104235729 -55364054 + (CCCCCT)n Simple_repeat Simple_repeat 2 40 0 4 1380 987 206 63 34 chr3 104236195 104236401 -55363382 + B3 SINE B2 5 216 0 4 1380 1176 88 0 0 chr3 104236418 104236566 -55363217 + B1_Mus1 SINE Alu 1 148 0 4 1380 912 274 107 40 chr3 104236567 104237015 -55362768 + L1MB4 LINE L1 5427 5940 -240 4 1380 477 0 0 0 chr3 104237162 104237215 -55362568 + (TC)n Simple_repeat Simple_repeat 1 53 0 4 1380 272 27 0 26 chr3 104237226 104237264 -55362519 + (TG)n Simple_repeat Simple_repeat 2 38 0 4 1380 195 100 0 0 chr3 104237490 104237520 -55362263 + (A)n Simple_repeat Simple_repeat 1 30 0 4 1380 733 281 137 83 chr3 104237533 104237682 -55362101 + L1MA5 LINE L1 4471 4624 -1519 4 1380 263 219 25 76 chr3 104237682 104237761 -55362022 + ID4_ SINE ID 1 75 -8 4 1380 733 281 137 83 chr3 104237761 104238151 -55361632 + L1MA5 LINE L1 4625 5039 -1104 4 1380 307 219 35 95 chr3 104238298 104238414 -55361369 + L1MA5 LINE L1 5269 5377 -935 4 1380 541 254 84 7 chr3 104238455 104238598 -55361185 + B3A SINE B2 7 160 -38 4 1380 663 13 0 0 chr3 104238600 104238676 -55361107 + (TC)n Simple_repeat Simple_repeat 1 76 0 4 1380 249 33 0 0 chr3 104238676 104238705 -55361078 + (CA)n Simple_repeat Simple_repeat 1 30 0 4 1380 597 298 91 7 chr3 104238705 104239012 -55360771 + L1MA5 LINE L1 5437 5769 -522 4 1380 621 168 9 26 chr3 104239022 104239138 -55360645 + PB1D9 SINE Alu 7 120 0 4 1380 315 239 119 43 chr3 104239144 104239287 -55360496 + L1MA5 LINE L1 5769 5926 -371 4 1380 596 294 115 23 chr3 104239336 104239597 -55360186 + L1MA5 LINE L1 6012 6296 -4 4 1380 290 291 0 82 chr3 104240054 104240200 -55359583 + L1M4 LINE L1 5607 5740 -438 4 1380 1463 215 89 82 chr3 104240201 104240617 -55359166 - MTD LTR MaLR 0 419 1 4 1380 488 113 0 0 chr3 104240759 104240830 -55358953 + B3A SINE B2 1 71 -127 4 1380 198 274 9 114 chr3 104241145 104241277 -55358506 + MIR3 SINE MIR 49 169 -39 4 1380 255 228 17 17 chr3 104241421 104241479 -55358304 - tRNA-Ala-GCY_ tRNA tRNA -7 68 11 4 1380 927 212 9 42 chr3 104241872 104242084 -55357699 - ID_B1 SINE B4 -17 207 3 5 1380 1086 140 0 0 chr3 104243212 104243391 -55356392 + (TCC)n Simple_repeat Simple_repeat 2 180 0 5 1380 860 99 0 54 chr3 104243397 104243545 -55356238 - B1_Mur3 SINE Alu 0 149 10 5 1380 307 296 29 131 chr3 104243585 104243760 -55356023 + MT2B2 LTR ERVL 122 278 -306 5 1380 906 96 14 49 chr3 104243645 104243787 -55355996 + B1_Mus1 SINE Alu 10 146 -2 5 1380 203 89 67 0 chr3 104243798 104243843 -55355940 + (CAAAC)n Simple_repeat Simple_repeat 2 49 0 5 1380 878 223 35 30 chr3 104243858 104244057 -55355726 + ID_B1 SINE B4 2 201 -23 5 1380 299 296 37 74 chr3 104244899 104245034 -55354749 - MIR SINE MIR -105 157 28 5 1380 21 0 0 0 chr3 104246600 104246621 -55353162 + GC_rich Low_complexity Low_complexity 1 21 0 5 1380 289 129 14 14 chr3 104246751 104246822 -55352961 + T-rich Low_complexity Low_complexity 1 71 0 5 1380 735 290 91 29 chr3 104246919 104247581 -55352202 + L1M2 LINE L1 4608 5341 -539 5 1380 367 347 121 17 chr3 104248017 104248190 -55351593 - MIR SINE MIR -65 197 7 5 1380 529 201 122 79 chr3 104250220 104250409 -55349374 + B3A SINE B2 1 197 -1 5 1380 334 220 30 126 chr3 104250522 104250546 -55349237 + MT2B LTR ERVL 143 153 -448 5 1380 705 145 34 8 chr3 104250546 104250664 -55349119 + B1_Mur1 SINE Alu 1 121 -28 5 1380 305 235 87 113 chr3 104250918 104251033 -55348750 + B4 SINE B4 45 156 -136 5 1380 414 0 0 0 chr3 104251125 104251171 -55348612 + (CA)n Simple_repeat Simple_repeat 1 46 0 5 1380 314 135 39 0 chr3 104251217 104251269 -55348514 + B1_Mus2 SINE Alu 1 54 -93 5 1380 243 226 0 0 chr3 104251279 104251332 -55348451 + (CAGG)n Simple_repeat Simple_repeat 2 54 0 5 1380 634 147 0 60 chr3 104251332 104251448 -55348335 + B1_Mur2 SINE Alu 40 148 -1 5 1380 214 272 148 104 chr3 104251447 104251562 -55348221 + PB1D9 SINE Alu 1 120 0 5 1380 319 198 67 34 chr3 104251474 104251563 -55348220 + ID_B1 SINE B4 133 224 0 5 1380 521 232 102 49 chr3 104251878 104252032 -55347751 - B3A SINE B2 -46 170 1 5 1380 410 66 33 0 chr3 104252557 104252618 -55347165 + (GGGAGA)n Simple_repeat Simple_repeat 4 66 0 5 1380 387 248 28 73 chr3 104252715 104252824 -55346959 - B4 SINE B4 0 292 189 5 1380 707 240 28 21 chr3 104252857 104253018 -55346765 - ID_B1 SINE B4 -52 240 84 5 1380 370 180 11 22 chr3 104253030 104253121 -55346662 + T-rich Low_complexity Low_complexity 3 92 0 5 1380 180 0 0 0 chr3 104253122 104253142 -55346641 + (TTCC)n Simple_repeat Simple_repeat 1 20 0 5 1380 16471 43 2 0 chr3 104253204 104257089 -55342694 + L1Md_Gf LINE L1 1 3360 -2526 5 1380 1417 78 5 20 chr3 104257105 104257300 -55342483 - B2_Mm2 SINE B2 0 195 4 5 1380 270 116 0 0 chr3 104258534 104258577 -55341206 + (GGAGA)n Simple_repeat Simple_repeat 1 43 0 5 1380 275 320 0 0 chr3 104258746 104258824 -55340959 + ID4 SINE ID 4 81 -2 5 1380 21 0 0 0 chr3 104259164 104259185 -55340598 + AT_rich Low_complexity Low_complexity 1 21 0 5 1380 1043 196 0 39 chr3 104261977 104262184 -55337599 - B3 SINE B2 -17 199 1 5 1380 553 143 55 0 chr3 104262396 104262487 -55337296 + MTC LTR MaLR 1 96 -325 5 1380 4088 174 93 9 chr3 104262488 104263258 -55336525 + RMER1A Other Other 57 1030 0 5 1380 1824 164 66 0 chr3 104263259 104263577 -55336206 + MTC LTR MaLR 83 421 0 5 1380 573 190 183 22 chr3 104263709 104263859 -55335924 - B3 SINE B2 -3 213 37 5 1380 947 307 11 4 chr3 104264037 104264312 -55335471 + B4A SINE B4 2 278 -14 5 1380 250 227 32 16 chr3 104264422 104264484 -55335299 + B1F SINE Alu 13 75 -74 5 1380 371 260 60 0 chr3 104264516 104264616 -55335167 - MER5A1 DNA MER1_type -23 143 38 5 1380 361 344 0 15 chr3 104265688 104265818 -55333965 - MIR SINE MIR -8 254 127 5 1380 217 333 0 0 chr3 104265832 104265883 -55333900 - MIR SINE MIR -194 68 18 5 1380 391 211 14 0 chr3 104266929 104267000 -55332783 + ID4_ SINE ID 5 76 -7 5 1380 250 279 108 92 chr3 104267249 104267393 -55332390 + B1F1 SINE Alu 1 146 -3 5 1380 728 216 29 0 chr3 104267394 104267533 -55332250 + B1_Mur3 SINE Alu 5 147 -2 5 1380 315 243 0 14 chr3 104268568 104268639 -55331144 - PB1D10 SINE Alu -7 110 41 5 1380 235 208 42 0 chr3 104268709 104268757 -55331026 + B1F SINE Alu 100 149 0 5 1380 401 198 10 0 chr3 104268762 104268863 -55330920 + GA-rich Low_complexity Low_complexity 3 104 0 5 1380 853 184 7 0 chr3 104269165 104269312 -55330471 + B1_Mus1 SINE Alu 1 148 0 5 1380 948 234 19 9 chr3 104270114 104270325 -55329458 + B3 SINE B2 4 216 0 5 1380 366 80 0 0 chr3 104271375 104271425 -55328358 + (TC)n Simple_repeat Simple_repeat 1 50 0 5 1380 1289 73 78 6 chr3 104271427 104271607 -55328176 - B2_Mm2 SINE B2 0 195 3 5 1380 358 314 94 25 chr3 104271631 104271791 -55327992 - MIR3 SINE MIR -18 190 20 5 1380 362 267 56 0 chr3 104272252 104272342 -55327441 + B1_Mm SINE Alu 1 95 -52 5 1380 246 176 91 0 chr3 104272842 104272893 -55326890 - PB1 SINE Alu -5 122 57 5 1380 479 95 0 13 chr3 104272980 104273055 -55326728 + (TA)n Simple_repeat Simple_repeat 2 75 0 5 1380 690 321 27 18 chr3 104273061 104273280 -55326503 - ID_B1 SINE B4 -1 223 3 5 1380 21 0 0 0 chr3 104273331 104273352 -55326431 + AT_rich Low_complexity Low_complexity 1 21 0 5 1380 497 265 1 5 chr3 104273403 104273525 -55326258 - B3 SINE B2 -74 119 1 5 1380 201 39 0 0 chr3 104273870 104273896 -55325887 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 5 1380 379 272 65 46 chr3 104274062 104274170 -55325613 - RSINE1 SINE B4 -53 112 3 5 1380 180 111 0 0 chr3 104274379 104274406 -55325377 + (TG)n Simple_repeat Simple_repeat 2 28 0 5 1380 240 231 0 0 chr3 104274563 104274615 -55325168 + T-rich Low_complexity Low_complexity 1 52 0 5 1380 267 103 0 0 chr3 104274617 104274656 -55325127 + (GGGA)n Simple_repeat Simple_repeat 2 40 0 5 1380 717 223 0 0 chr3 104274799 104274929 -55324854 + B1_Mus1 SINE Alu 5 134 -14 5 1380 253 261 30 30 chr3 104275636 104275703 -55324080 + RSINE1 SINE B4 2 68 -97 5 1380 848 199 20 0 chr3 104275875 104276026 -55323757 + B3 SINE B2 1 154 -62 5 1380 423 265 21 91 chr3 104276022 104276209 -55323574 + MLT1J1 LTR MaLR 9 182 -262 5 1380 614 225 185 33 chr3 104276213 104276397 -55323386 + B3 SINE B2 2 213 -3 5 1380 283 169 131 12 chr3 104277161 104277245 -55322538 - MER31-int LTR ERV1 -3498 1858 1765 5 1380 294 266 125 0 chr3 104277280 104277408 -55322375 - MER31-int LTR ERV1 -3643 1713 1570 5 1380 232 83 42 0 chr3 104277427 104277475 -55322308 + (TTTTG)n Simple_repeat Simple_repeat 1 50 0 5 1380 799 145 62 48 chr3 104277481 104277626 -55322157 - B1_Mus1 SINE Alu -1 147 1 5 1380 217 151 19 19 chr3 104277633 104277687 -55322096 + CT-rich Low_complexity Low_complexity 3 56 0 5 1380 25 31 0 0 chr3 104277707 104277739 -55322044 + AT_rich Low_complexity Low_complexity 1 32 0 5 1380 801 138 36 0 chr3 104277756 104277894 -55321889 - URR1B DNA MER1_type 0 225 83 5 1380 338 270 64 51 chr3 104277894 104277905 -55321878 + CYRA11_Mm Unknown Y-chromosome 215 322 -295 5 1380 608 323 74 22 chr3 104277977 104278208 -55321575 + B4A SINE B4 44 286 -6 5 1380 449 129 114 0 chr3 104278331 104278401 -55321382 - B1F SINE Alu -5 144 67 5 1380 180 111 0 0 chr3 104278430 104278457 -55321326 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 5 1380 928 330 90 3 chr3 104278540 104278850 -55320933 + Tigger7 DNA MER2_type 1 337 -2154 5 1380 374 287 119 46 chr3 104279066 104279326 -55320457 + Lx8 LINE L1 7231 7465 -8 5 1380 688 301 102 58 chr3 104279709 104280090 -55319693 - MER31-int LTR ERV1 -4529 407 10 5 1380 1270 275 84 30 chr3 104280134 104280509 -55319274 - MER31A LTR ERV1 0 485 109 5 1380 540 205 0 127 chr3 104280509 104280643 -55319140 + PB1D9 SINE Alu 4 120 0 5 1380 1270 275 84 30 chr3 104280643 104280706 -55319077 - MER31A LTR ERV1 -377 108 24 5 1380 1047 255 14 0 chr3 104280983 104281195 -55318588 - ID_B1 SINE B4 -8 216 2 5 1380 374 259 0 24 chr3 104281326 104281409 -55318374 - ID4_ SINE ID 0 83 3 5 1380 185 277 114 71 chr3 104281531 104281649 -55318134 - MIRb SINE MIR -67 201 75 5 1380 1299 75 74 17 chr3 104281649 104281825 -55317958 + B2_Mm2 SINE B2 1 186 -9 5 1380 185 277 114 71 chr3 104281825 104281846 -55317937 - MIRb SINE MIR -194 74 56 5 1380 698 156 57 35 chr3 104282026 104282175 -55317608 - B1_Mur4 SINE Alu 0 150 1 5 1380 302 240 434 0 chr3 104282177 104282276 -55317507 - RSINE1 SINE B4 -21 144 3 5 1380 247 276 79 0 chr3 104282305 104282381 -55317402 - Charlie10 DNA MER1_type -2685 137 56 5 1380 1121 85 158 0 chr3 104282474 104282638 -55317145 + B2_Mm2 SINE B2 2 191 -4 5 1380 619 279 95 16 chr3 104282669 104282858 -55316925 + B3 SINE B2 5 208 -8 5 1380 1031 233 26 0 chr3 104282902 104283095 -55316688 + B3 SINE B2 5 202 -14 5 1380 26 0 0 0 chr3 104283095 104283121 -55316662 + AT_rich Low_complexity Low_complexity 1 26 0 5 1380 625 230 159 12 chr3 104283519 104283682 -55316101 + B3 SINE B2 2 188 -28 5 1380 812 199 7 0 chr3 104283854 104283990 -55315793 - B1_Mur1 SINE Alu -11 138 2 5 1380 730 297 14 4 chr3 104284192 104284406 -55315377 - B3A SINE B2 -1 215 1 5 1380 903 290 43 0 chr3 104284963 104285266 -55314517 + L1MA4 LINE L1 5542 5857 -443 5 1380 423 0 0 0 chr3 104285309 104285356 -55314427 + (TG)n Simple_repeat Simple_repeat 2 48 0 5 1380 612 213 42 42 chr3 104286053 104286195 -55313588 + B1_Mur2 SINE Alu 1 142 -7 5 1380 1447 80 0 31 chr3 104286544 104286737 -55313046 - B2_Mm2 SINE B2 -7 188 2 5 1380 518 220 0 0 chr3 104287064 104287155 -55312628 + PB1D10 SINE Alu 14 104 -13 5 1380 183 80 0 0 chr3 104287190 104287215 -55312568 + (TAAA)n Simple_repeat Simple_repeat 3 27 0 6 1380 293 235 31 133 chr3 104287215 104287232 -55312551 + MT2B LTR ERVL 148 235 -366 6 1380 383 275 0 12 chr3 104287232 104287313 -55312470 + B1F2 SINE Alu 1 80 -69 6 1380 1641 188 93 21 chr3 104287341 104287673 -55312110 + ORR1D1 LTR MaLR 5 360 -14 6 1380 2642 204 65 17 chr3 104287677 104288182 -55311601 + ORR1D1-int LTR MaLR 1 532 -838 6 1380 287 49 24 0 chr3 104288182 104288223 -55311560 + (TAAA)n Simple_repeat Simple_repeat 2 43 0 6 1380 2642 204 65 17 chr3 104288223 104288306 -55311477 + ORR1D1-int LTR MaLR 533 617 -753 6 1380 382 293 98 69 chr3 104288306 104288720 -55311063 + RLTR12B LTR ERVK 1 332 -196 6 1380 3235 189 70 36 chr3 104288804 104289495 -55310288 + ORR1D1-int LTR MaLR 641 1355 -15 6 1380 6222 176 65 24 chr3 104289495 104290329 -55309454 + RMER12 LTR ERVK 1 832 -490 6 1380 384 22 0 0 chr3 104290329 104290374 -55309409 + (TA)n Simple_repeat Simple_repeat 2 46 0 6 1380 6222 176 65 24 chr3 104290374 104290810 -55308973 + RMER12 LTR ERVK 833 1321 -1 6 1380 1586 188 67 40 chr3 104290831 104291202 -55308581 + ORR1D1 LTR MaLR 1 381 -3 6 1380 626 146 182 50 chr3 104291361 104291520 -55308263 + B2_Mm2 SINE B2 2 181 -14 6 1380 1104 88 164 0 chr3 104291523 104291682 -55308101 + B2_Mm1t SINE B2 1 185 -8 6 1380 425 189 0 27 chr3 104291757 104291836 -55307947 + B1_Mur3 SINE Alu 37 135 -14 6 1380 265 84 379 11 chr3 104291837 104291932 -55307851 - B2_Mm2 SINE B2 -6 189 60 6 1380 198 0 0 0 chr3 104291939 104291961 -55307822 + (T)n Simple_repeat Simple_repeat 1 22 0 6 1380 1313 48 0 0 chr3 104291961 104292108 -55307675 - B1_Mus1 SINE Alu 0 148 2 6 1380 1386 81 12 0 chr3 104292207 104292380 -55307403 - B2_Mm1t SINE B2 -16 177 3 6 1380 1968 268 126 86 chr3 104292536 104293579 -55306204 + Lx8 LINE L1 6051 7114 -359 6 1380 429 271 82 27 chr3 104293868 104293978 -55305805 + PB1D10 SINE Alu 1 116 -1 6 1380 271 233 97 37 chr3 104294017 104294143 -55305640 + ID4_ SINE ID 6 132 -20 6 1380 263 214 122 54 chr3 104295943 104296017 -55303766 - U13 snRNA snRNA -29 79 1 6 1380 648 282 51 98 chr3 104296025 104296320 -55303463 - B4A SINE B4 0 292 12 6 1380 343 291 0 12 chr3 104296395 104296475 -55303308 + ID4_ SINE ID 2 80 -3 6 1380 682 178 59 0 chr3 104296513 104296631 -55303152 + B1_Mur1 SINE Alu 25 149 0 6 1380 1326 78 0 0 chr3 104296649 104296829 -55302954 + (GA)n Simple_repeat Simple_repeat 1 180 0 6 1380 915 216 8 0 chr3 104296830 104297088 -55302695 + GA-rich Low_complexity Low_complexity 1 260 0 6 1380 752 154 154 0 chr3 104297435 104297565 -55302218 + B1_Mur4 SINE Alu 1 150 0 6 1380 223 293 0 0 chr3 104298276 104298334 -55301449 + (TA)n Simple_repeat Simple_repeat 1 58 0 6 1380 349 274 48 19 chr3 104298378 104298482 -55301301 - B4A SINE B4 -158 134 28 6 1380 270 0 0 0 chr3 104298486 104298516 -55301267 + (CA)n Simple_repeat Simple_repeat 2 31 0 6 1380 722 244 77 0 chr3 104298785 104298941 -55300842 - B3A SINE B2 -29 169 2 6 1380 303 346 39 10 chr3 104298996 104299008 -55300775 + ID SINE ID 69 83 -141 6 1380 370 316 9 17 chr3 104299008 104299124 -55300659 + PB1D10 SINE Alu 3 117 0 6 1380 250 328 55 23 chr3 104299183 104299311 -55300472 + B1F SINE Alu 2 133 -16 6 1380 1038 221 72 0 chr3 104299312 104299507 -55300276 + B3 SINE B2 1 209 -7 6 1380 518 216 0 0 chr3 104299613 104299710 -55300073 - B3A SINE B2 -99 99 3 6 1380 678 301 88 28 chr3 104299768 104299983 -55299800 + B4A SINE B4 6 233 -59 6 1380 1859 267 35 80 chr3 104299983 104300177 -55299606 + Lx7 LINE L1 6691 6865 -831 6 1380 738 71 257 0 chr3 104300177 104300290 -55299493 - B1_Mm SINE Alu -1 146 5 6 1380 1859 267 35 80 chr3 104300290 104300742 -55299041 + Lx7 LINE L1 6866 7308 -388 6 1380 602 231 68 42 chr3 104300768 104300958 -55298825 - B2_Mm2 SINE B2 0 195 1 6 1380 671 167 0 0 chr3 104300998 104301106 -55298677 + B1_Mur4 SINE Alu 42 149 -1 6 1380 260 127 250 52 chr3 104301109 104301225 -55298558 + Lx8 LINE L1 7334 7472 -1 6 1380 628 258 64 11 chr3 104301690 104301833 -55297950 - Lx5 LINE L1 0 7050 6898 6 1380 368 40 20 0 chr3 104301833 104301883 -55297900 + (CCA)n Simple_repeat Simple_repeat 2 52 0 6 1380 628 258 64 11 chr3 104301883 104301927 -55297856 - Lx5 LINE L1 -153 6897 6854 6 1380 642 213 102 0 chr3 104301933 104302060 -55297723 + B1F2 SINE Alu 3 142 -7 6 1380 525 223 122 74 chr3 104302087 104302276 -55297507 - B3A SINE B2 0 198 1 6 1380 511 223 106 15 chr3 104302291 104302423 -55297360 + B1F2 SINE Alu 1 144 -5 6 1380 505 273 0 18 chr3 104302577 104302689 -55297094 + PB1D10 SINE Alu 6 115 -2 6 1380 435 166 25 94 chr3 104302688 104302799 -55296984 + PB1D9 SINE Alu 1 119 -1 6 1380 1230 88 0 0 chr3 104303068 104303215 -55296568 - B1_Mus2 SINE Alu 0 147 1 6 1380 645 189 165 0 chr3 104303230 104303357 -55296426 - B1_Mur3 SINE Alu 0 149 2 6 1380 230 114 114 0 chr3 104303460 104303504 -55296279 + PB1D10 SINE Alu 55 103 -14 6 1380 260 198 355 9 chr3 104304209 104304316 -55295467 + B1_Mur4 SINE Alu 5 150 0 6 1380 521 296 89 30 chr3 104304422 104304624 -55295159 + B4A SINE B4 5 218 -74 6 1380 333 261 114 0 chr3 104305255 104305343 -55294440 + B1F SINE Alu 1 98 -51 6 1380 404 187 13 0 chr3 104305446 104305521 -55294262 + B1_Mur4 SINE Alu 75 150 0 6 1380 324 246 0 14 chr3 104305544 104305614 -55294169 + B3A SINE B2 5 73 -125 6 1380 532 294 116 102 chr3 104305677 104305960 -55293823 + ORR1E LTR MaLR 1 287 -72 6 1380 651 190 0 8 chr3 104305960 104306077 -55293706 + B1_Mur4 SINE Alu 1 116 -34 6 1380 239 236 0 132 chr3 104306103 104306186 -55293597 + ORR1E LTR MaLR 300 371 -8 6 1380 979 145 6 0 chr3 104306225 104306384 -55293399 + URR1B DNA MER1_type 66 225 0 6 1380 425 277 40 46 chr3 104306384 104306419 -55293364 - CYRA11_Mm Unknown Y-chromosome -445 172 139 6 1380 221 342 25 25 chr3 104306452 104306533 -55293250 - ID4_ SINE ID -1 82 2 6 1380 941 42 0 0 chr3 104306568 104306686 -55293097 - B1_Mus2 SINE Alu 0 147 30 6 1380 453 264 153 68 chr3 104306595 104306843 -55292940 - MT2B LTR ERVL -323 278 10 6 1380 1321 195 253 32 chr3 104307169 104307545 -55292238 + MT2A LTR ERVL 1 459 -74 6 1380 219 36 0 0 chr3 104307548 104307576 -55292207 + (TG)n Simple_repeat Simple_repeat 2 29 0 6 1380 215 307 12 62 chr3 104307604 104307684 -55292099 - ID4_ SINE ID -6 77 2 6 1380 212 86 0 28 chr3 104307694 104307730 -55292053 + (CTTA)n Simple_repeat Simple_repeat 1 35 0 6 1380 838 249 5 42 chr3 104307754 104307943 -55291840 + B3A SINE B2 11 192 -6 6 1380 719 216 8 0 chr3 104307960 104308085 -55291698 - B3 SINE B2 -89 127 2 6 1380 358 303 30 20 chr3 104308101 104308202 -55291581 - PB1D10 SINE Alu -7 110 9 6 1380 907 271 113 50 chr3 104308756 104309075 -55290708 + Lx8 LINE L1 6891 7229 -244 6 1380 34 24 0 0 chr3 104309080 104309121 -55290662 + AT_rich Low_complexity Low_complexity 1 41 0 6 1380 355 286 56 19 chr3 104309124 104309231 -55290552 + PB1D7 SINE Alu 2 112 -8 6 1380 231 33 0 0 chr3 104309291 104309316 -55290467 + (T)n Simple_repeat Simple_repeat 1 25 0 6 1380 1251 61 0 13 chr3 104309316 104309465 -55290318 - B1_Mus2 SINE Alu 0 147 1 6 1380 362 218 0 25 chr3 104309588 104309668 -55290115 + PB1D9 SINE Alu 41 118 -2 6 1380 486 266 117 0 chr3 104309714 104309842 -55289941 + RSINE1 SINE B4 4 146 -19 6 1380 1025 82 188 12 chr3 104310004 104310164 -55289619 + B2_Mm2 SINE B2 4 191 -4 6 1380 786 224 91 35 chr3 104310243 104310442 -55289341 - B4A SINE B4 -59 233 24 6 1380 1702 172 66 6 chr3 104310455 104310805 -55288978 - Lx LINE L1 -21 6633 6263 6 1380 956 159 7 0 chr3 104310888 104311033 -55288750 - B1_Mur4 SINE Alu 0 150 5 6 1380 1287 54 0 0 chr3 104311246 104311394 -55288389 + B1_Mus1 SINE Alu 1 148 0 6 1380 428 283 101 38 chr3 104311720 104311878 -55287905 + B4A SINE B4 2 169 -123 6 1380 260 236 85 48 chr3 104311807 104311914 -55287869 + B1F2 SINE Alu 5 115 -5 6 1380 392 249 202 12 chr3 104311981 104312114 -55287669 + B3A SINE B2 2 163 -35 6 1380 207 100 0 0 chr3 104312114 104312144 -55287639 + (CAGG)n Simple_repeat Simple_repeat 2 31 0 6 1380 392 249 202 12 chr3 104312144 104312173 -55287610 + B3A SINE B2 164 194 -4 6 1380 249 103 0 0 chr3 104312258 104312297 -55287486 - B1_Mur4 SINE Alu -2 148 110 6 1380 686 176 30 30 chr3 104312282 104312417 -55287366 - B3 SINE B2 -81 135 1 6 1380 1179 52 0 0 chr3 104312451 104312586 -55287197 + B1_Mm SINE Alu 1 135 -12 6 1380 288 0 0 0 chr3 104312586 104312618 -55287165 + (TAAA)n Simple_repeat Simple_repeat 1 32 0 6 1380 239 160 120 0 chr3 104312713 104312763 -55287020 + ID2 SINE ID 2 57 -26 6 1380 367 266 16 0 chr3 104312945 104313049 -55286734 + PB1D10 SINE Alu 12 120 0 6 1380 424 278 65 36 chr3 104313073 104313211 -55286572 + MTEb LTR MaLR 231 372 -7 6 1380 879 181 0 0 chr3 104313207 104313351 -55286432 + B1_Mus1 SINE Alu 5 148 0 6 1380 1201 276 71 9 chr3 104313390 104313715 -55286068 + MTEb-int LTR MaLR 11 355 -1225 6 1380 323 232 49 0 chr3 104313809 104313891 -55285892 + PB1D10 SINE Alu 32 117 0 6 1380 251 28 0 27 chr3 104313902 104313939 -55285844 + (TAAA)n Simple_repeat Simple_repeat 2 37 0 6 1380 189 0 0 0 chr3 104315112 104315133 -55284650 + (A)n Simple_repeat Simple_repeat 1 21 0 6 1380 327 294 18 27 chr3 104316703 104316815 -55282968 + PB1D10 SINE Alu 1 111 -6 6 1380 619 268 14 21 chr3 104316831 104316976 -55282807 + RSINE1 SINE B4 1 144 -21 6 1380 414 0 0 0 chr3 104316978 104317024 -55282759 + (CA)n Simple_repeat Simple_repeat 2 47 0 6 1380 544 217 78 28 chr3 104317257 104317399 -55282384 + B3A SINE B2 1 149 -49 6 1380 827 215 79 39 chr3 104317446 104317649 -55282134 - B3 SINE B2 -4 212 2 7 1380 410 232 0 31 chr3 104317657 104317755 -55282028 - PB1D10 SINE Alu -2 115 21 7 1380 908 121 5 174 chr3 104317757 104317769 -55282014 - B2_Mm2 SINE B2 -26 169 163 7 1380 219 36 0 0 chr3 104317769 104317797 -55281986 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 7 1380 908 121 5 174 chr3 104317797 104317985 -55281798 - B2_Mm2 SINE B2 -33 162 3 7 1380 426 43 29 14 chr3 104317991 104318061 -55281722 + (TG)n Simple_repeat Simple_repeat 1 71 0 7 1380 414 264 23 60 chr3 104318072 104318205 -55281578 - RSINE1 SINE B4 -35 130 3 7 1380 757 164 8 0 chr3 104318242 104318370 -55281413 + B1_Mus2 SINE Alu 11 139 -8 7 1380 278 255 131 94 chr3 104318370 104318401 -55281382 + MT2B2 LTR ERVL 175 339 -245 7 1380 259 337 10 10 chr3 104318684 104318783 -55281000 - L1M5 LINE L1 -1543 4603 4505 7 1380 1407 83 5 20 chr3 104318794 104318832 -55280951 - B2_Mm2 SINE B2 -2 193 160 7 1380 302 0 26 0 chr3 104318832 104318870 -55280913 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 7 1380 1407 83 5 20 chr3 104318870 104319027 -55280756 - B2_Mm2 SINE B2 -36 159 2 7 1380 341 267 0 0 chr3 104319080 104319140 -55280643 - RSINE1 SINE B4 -37 128 69 7 1380 356 176 0 29 chr3 104319136 104319206 -55280577 + B1_Mur1 SINE Alu 82 149 0 7 1380 563 278 0 27 chr3 104319220 104319368 -55280415 + ID_B1 SINE B4 78 221 -3 7 1380 296 252 126 84 chr3 104319375 104319391 -55280392 + ID_B1 SINE B4 76 223 0 7 1380 352 235 167 56 chr3 104319391 104319517 -55280266 + B1F1 SINE Alu 10 149 0 7 1380 536 236 32 91 chr3 104319549 104319703 -55280080 + B1F SINE Alu 4 148 -1 7 1380 323 279 0 71 chr3 104319710 104319795 -55279988 + ID4 SINE ID 2 80 -3 7 1380 252 218 17 52 chr3 104319990 104320048 -55279735 + ID4_ SINE ID 2 57 -26 7 1380 449 127 13 0 chr3 104320090 104320169 -55279614 + (TA)n Simple_repeat Simple_repeat 1 80 0 7 1380 233 72 0 82 chr3 104320375 104320436 -55279347 + T-rich Low_complexity Low_complexity 2 57 0 7 1380 866 212 7 0 chr3 104320440 104320586 -55279197 - B1_Mur2 SINE Alu 0 149 3 7 1380 377 200 53 105 chr3 104320608 104320703 -55279080 + MT2B LTR ERVL 149 238 -363 7 1380 580 248 0 50 chr3 104320633 104320755 -55279028 + ID_B1 SINE B4 92 208 -16 7 1380 240 35 0 0 chr3 104320755 104320784 -55278999 + (TAAA)n Simple_repeat Simple_repeat 1 29 0 7 1380 580 248 0 50 chr3 104320784 104320801 -55278982 + ID_B1 SINE B4 209 224 0 7 1380 742 286 22 27 chr3 104320847 104321070 -55278713 + ID_B1 SINE B4 1 222 -2 7 1380 360 0 0 0 chr3 104321178 104321218 -55278565 + (TG)n Simple_repeat Simple_repeat 2 41 0 7 1380 666 209 26 104 chr3 104321223 104321415 -55278368 - B3 SINE B2 -38 178 2 7 1380 224 228 35 0 chr3 104321496 104321553 -55278230 + ID4_ SINE ID 1 59 -24 7 1380 22 35 0 0 chr3 104321567 104321596 -55278187 + AT_rich Low_complexity Low_complexity 1 29 0 7 1380 589 257 0 81 chr3 104321596 104321744 -55278039 - ID_B1 SINE B4 -6 218 83 7 1380 229 211 32 53 chr3 104321763 104321858 -55277925 + (TCTA)n Simple_repeat Simple_repeat 2 94 0 7 1380 181 30 91 0 chr3 104321899 104321932 -55277851 + (TCTA)n Simple_repeat Simple_repeat 4 39 0 7 1380 570 215 0 61 chr3 104321979 104322093 -55277690 - PB1D7 SINE Alu -11 109 3 7 1380 1659 57 0 0 chr3 104322156 104322348 -55277435 - B2_Mm1a SINE B2 0 193 2 7 1380 255 311 73 73 chr3 104322777 104322982 -55276801 + L1M5 LINE L1 5559 5763 -477 7 1380 834 247 25 30 chr3 104323165 104323365 -55276418 + ID_B1 SINE B4 2 200 -24 7 1380 195 42 0 0 chr3 104323367 104323391 -55276392 + (CAA)n Simple_repeat Simple_repeat 3 26 0 7 1380 230 0 0 32 chr3 104323706 104323737 -55276046 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 7 1380 1139 88 0 0 chr3 104323912 104324048 -55275735 + B1_Mus1 SINE Alu 4 139 -9 7 1380 252 191 43 29 chr3 104324130 104324200 -55275583 + PB1D10 SINE Alu 47 117 0 7 1380 964 140 28 0 chr3 104324213 104324356 -55275427 + B1_Mm SINE Alu 1 147 0 7 1380 612 137 0 0 chr3 104324358 104324460 -55275323 + (GGGA)n Simple_repeat Simple_repeat 4 105 0 7 1380 234 254 0 63 chr3 104324539 104324602 -55275181 + MLT2B2 LTR ERVL 186 244 -271 7 1380 1428 71 48 16 chr3 104324976 104325163 -55274620 - B2_Mm2 SINE B2 -2 193 1 7 1380 571 144 114 26 chr3 104325921 104326035 -55273748 + B1_Mur3 SINE Alu 10 133 -16 7 1380 210 222 0 0 chr3 104326041 104326095 -55273688 + GA-rich Low_complexity Low_complexity 1 54 0 7 1380 280 276 59 96 chr3 104326158 104326175 -55273608 - B3A SINE B2 -65 133 64 7 1380 373 202 131 28 chr3 104326175 104326282 -55273501 - RSINE1 SINE B4 -36 129 12 7 1380 280 276 59 96 chr3 104326282 104326294 -55273489 - B3A SINE B2 -65 63 3 7 1380 235 326 79 30 chr3 104326323 104326424 -55273359 - MT2B LTR ERVL -338 263 158 7 1380 330 315 114 33 chr3 104326494 104326678 -55273105 - MIRb SINE MIR -35 233 35 7 1380 192 40 0 0 chr3 104326711 104326736 -55273047 + (TTTTTG)n Simple_repeat Simple_repeat 5 29 0 7 1380 407 227 0 40 chr3 104326737 104326838 -55272945 - PB1D9 SINE Alu -2 118 22 7 1380 776 182 8 8 chr3 104326981 104327114 -55272669 - B1_Mus2 SINE Alu -9 138 6 7 1380 278 328 43 89 chr3 104327131 104327316 -55272467 - MIR SINE MIR -88 174 3 7 1380 808 225 99 0 chr3 104327913 104328095 -55271688 - B3 SINE B2 -15 201 2 7 1380 681 246 11 189 chr3 104328187 104328311 -55271472 + ID_B1 SINE B4 1 218 -6 7 1380 1029 128 0 0 chr3 104328311 104328452 -55271331 + B1_Mur4 SINE Alu 4 144 -6 7 1380 307 82 0 93 chr3 104328466 104328520 -55271263 + ID_B1 SINE B4 108 156 -68 7 1380 1588 279 73 24 chr3 104328520 104329052 -55270731 + Lx5 LINE L1 6492 7049 -1 7 1380 317 225 113 0 chr3 104329060 104329131 -55270652 + ID_B1 SINE B4 145 223 -1 7 1380 245 318 15 0 chr3 104329399 104329465 -55270318 + ID2 SINE ID 3 69 -14 7 1380 351 0 0 0 chr3 104329467 104329506 -55270277 + (CA)n Simple_repeat Simple_repeat 1 39 0 7 1380 273 284 35 69 chr3 104329904 104329991 -55269792 + BC1_Mm scRNA scRNA 2 85 -67 7 1380 519 17 0 0 chr3 104330435 104330495 -55269288 + (TC)n Simple_repeat Simple_repeat 1 60 0 7 1380 271 328 0 32 chr3 104330661 104330784 -55268999 + BC1_Mm scRNA scRNA 8 126 -26 7 1380 606 197 0 0 chr3 104330787 104330919 -55268864 + A-rich Low_complexity Low_complexity 1 132 0 7 1380 1310 90 16 11 chr3 104330928 104331119 -55268664 - MTB_Mm LTR MaLR -215 192 1 7 1380 1459 101 5 0 chr3 104331204 104331392 -55268391 + B2_Mm2 SINE B2 2 190 -5 7 1380 315 274 0 0 chr3 104331477 104331630 -55268153 + (TA)n Simple_repeat Simple_repeat 1 153 0 7 1380 212 214 0 97 chr3 104331675 104331737 -55268046 + B4 SINE B4 7 62 -230 7 1380 1024 169 115 0 chr3 104331765 104331948 -55267835 - B3 SINE B2 -1 215 12 7 1380 279 0 0 0 chr3 104331969 104332000 -55267783 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 7 1380 274 178 53 40 chr3 104332352 104332403 -55267380 + PB1D10 SINE Alu 27 81 -36 7 1380 1860 153 125 9 chr3 104332403 104332732 -55267051 + ORR1B2 LTR MaLR 1 367 0 7 1380 274 178 53 40 chr3 104332732 104332756 -55267027 + PB1D10 SINE Alu 82 103 -14 7 1380 218 160 20 0 chr3 104332757 104332807 -55266976 + (TAGA)n Simple_repeat Simple_repeat 4 54 0 7 1380 558 342 37 0 chr3 104332808 104332969 -55266814 + B3A SINE B2 2 168 -30 7 1380 201 121 0 0 chr3 104332972 104333005 -55266778 + (CA)n Simple_repeat Simple_repeat 2 34 0 7 1380 32 67 0 0 chr3 104333010 104333070 -55266713 + AT_rich Low_complexity Low_complexity 1 60 0 7 172 246 311 31 78 chr3 104333154 104333346 -55266437 - L1ME1 LINE L1 -10 6169 5987 7 1381 23 0 0 0 chr3 104333922 104333945 -55265838 + AT_rich Low_complexity Low_complexity 1 23 0 7 1381 234 81 0 0 chr3 104333946 104333983 -55265800 + (TG)n Simple_repeat Simple_repeat 2 38 0 7 1381 232 208 18 36 chr3 104333986 104334041 -55265742 - B4 SINE B4 -18 274 221 7 1381 653 147 50 5 chr3 104334091 104334215 -55265568 - B1_Mur4 SINE Alu 0 120 1 7 1381 600 238 122 21 chr3 104334237 104334426 -55265357 - B3 SINE B2 -7 209 2 7 1381 1359 94 10 20 chr3 104334443 104334639 -55265144 - B2_Mm2 SINE B2 -1 194 1 7 1381 430 312 65 0 chr3 104334642 104334780 -55265003 - B4 SINE B4 -64 228 82 7 1381 217 147 0 0 chr3 104334795 104334829 -55264954 - B4A SINE B4 -258 34 1 7 1381 1081 70 27 14 chr3 104334955 104335101 -55264682 - B1_Mus1 SINE Alu 0 148 1 7 1381 274 98 0 0 chr3 104335736 104335777 -55264006 - B3 SINE B2 -175 41 1 7 1381 1803 133 12 43 chr3 104335777 104336122 -55263661 - MTB_Mm LTR MaLR -73 334 1 7 1381 423 0 0 0 chr3 104336160 104336207 -55263576 + (TG)n Simple_repeat Simple_repeat 1 47 0 7 1381 290 369 0 16 chr3 104336252 104336376 -55263407 - RSINE1 SINE B4 -41 124 3 7 1381 636 242 68 34 chr3 104336379 104336421 -55263362 - B3 SINE B2 -4 212 164 7 1381 306 0 0 0 chr3 104336421 104336455 -55263328 + (TG)n Simple_repeat Simple_repeat 1 34 0 7 1381 636 242 68 34 chr3 104336455 104336617 -55263166 - B3 SINE B2 -53 163 1 7 1381 201 61 91 0 chr3 104336844 104336877 -55262906 + A-rich Low_complexity Low_complexity 1 36 0 7 1381 222 143 0 0 chr3 104336934 104336983 -55262800 + (T)n Simple_repeat Simple_repeat 1 49 0 7 1381 1216 48 7 0 chr3 104336985 104337131 -55262652 - B1_Mm SINE Alu 0 147 1 7 1381 285 350 0 0 chr3 104337161 104337241 -55262542 - ID4 SINE ID -1 82 3 7 1381 337 216 97 54 chr3 104337279 104337372 -55262411 + B1_Mur1 SINE Alu 44 140 -7 7 1381 1475 157 83 23 chr3 104337486 104337786 -55261997 + RMER5 LTR ERV1 173 490 -44 7 1381 795 105 129 0 chr3 104337787 104337911 -55261872 + B1_Mus2 SINE Alu 2 141 -6 7 1381 188 61 0 57 chr3 104337914 104337949 -55261834 + (CAGAGA)n Simple_repeat Simple_repeat 6 38 0 8 1381 842 170 0 15 chr3 104338050 104338187 -55261596 + B1_Mm SINE Alu 1 135 -12 8 1381 414 0 0 0 chr3 104338187 104338233 -55261550 + (TAGA)n Simple_repeat Simple_repeat 1 46 0 8 1381 561 30 0 0 chr3 104338234 104338301 -55261482 + (GGAA)n Simple_repeat Simple_repeat 2 68 0 8 1381 1121 43 43 0 chr3 104338377 104338515 -55261268 + B1_Mus1 SINE Alu 5 148 0 8 1381 506 119 0 12 chr3 104338515 104338600 -55261183 + (GAAA)n Simple_repeat Simple_repeat 2 85 0 8 1381 773 235 11 32 chr3 104338600 104338789 -55260994 + B3 SINE B2 27 211 -5 8 1381 1337 46 0 0 chr3 104338786 104338961 -55260822 - MT2_Mm LTR ERVL -318 175 1 8 1381 321 0 0 0 chr3 104338961 104338999 -55260784 - MERVL-int LTR ERVL 0 5485 5448 8 1381 301 153 26 53 chr3 104338999 104339075 -55260708 - ORR1A3-int LTR MaLR -1323 640 567 8 1381 2592 38 45 0 chr3 104339075 104339389 -55260394 - MERVL-int LTR ERVL -114 5371 5044 8 1381 589 185 0 44 chr3 104339409 104339522 -55260261 - B1_Mur1 SINE Alu -9 140 33 8 1381 1365 102 0 5 chr3 104339526 104339714 -55260069 - B2_Mm2 SINE B2 -8 187 1 8 1381 828 139 0 30 chr3 104339762 104339895 -55259888 + B3 SINE B2 2 130 -86 8 1381 249 33 0 0 chr3 104339934 104339964 -55259819 + (TTTC)n Simple_repeat Simple_repeat 2 31 0 8 1381 845 113 0 63 chr3 104339965 104340107 -55259676 - B1_Mus1 SINE Alu 0 148 16 8 1381 813 280 9 14 chr3 104340167 104340384 -55259399 + B4 SINE B4 10 225 -67 8 1381 1101 147 110 0 chr3 104340388 104340549 -55259234 + B3 SINE B2 1 165 -51 8 1381 264 100 0 0 chr3 104340549 104340589 -55259194 + (CATA)n Simple_repeat Simple_repeat 2 41 0 8 1381 1101 147 110 0 chr3 104340589 104340618 -55259165 + B3 SINE B2 166 211 -5 8 1381 566 206 96 30 chr3 104340768 104340903 -55258880 + ID_B1 SINE B4 80 223 -1 8 1381 906 161 0 7 chr3 104340979 104341129 -55258654 + B1_Mur4 SINE Alu 2 150 0 8 1381 316 275 39 115 chr3 104340989 104341145 -55258638 + B4A SINE B4 96 239 -53 8 1381 787 168 242 28 chr3 104341498 104341676 -55258107 - B3 SINE B2 0 216 1 8 1381 447 68 0 0 chr3 104341827 104341886 -55257897 + (GGA)n Simple_repeat Simple_repeat 3 61 0 8 1381 1318 90 11 0 chr3 104342063 104342240 -55257543 + B2_Mm1t SINE B2 1 179 -14 8 1381 445 62 299 0 chr3 104342267 104342373 -55257410 + B2_Mm2 SINE B2 46 188 -7 8 1381 597 199 96 30 chr3 104342392 104342527 -55257256 + B1_Mur1 SINE Alu 6 149 0 8 1381 357 125 0 0 chr3 104342527 104342583 -55257200 + (GAAAA)n Simple_repeat Simple_repeat 4 59 0 8 1381 481 280 206 0 chr3 104342706 104342881 -55256902 + ID_B1 SINE B4 3 213 -11 8 1381 1383 146 0 9 chr3 104342882 104343110 -55256673 - MTC LTR MaLR 0 421 196 8 1381 1161 113 0 0 chr3 104343116 104343441 -55256342 + (TTCC)n Simple_repeat Simple_repeat 1 325 0 8 1381 656 185 25 0 chr3 104343475 104343594 -55256189 - B1_Mus1 SINE Alu -12 136 15 8 1381 1053 114 26 122 chr3 104343591 104343727 -55256056 - MTC LTR MaLR -214 207 99 8 1381 1150 75 0 0 chr3 104343727 104343873 -55255910 - B1_Mus2 SINE Alu 0 147 2 8 1381 1053 114 26 122 chr3 104343873 104343965 -55255818 - MTC LTR MaLR -323 98 1 8 1381 288 77 0 0 chr3 104343971 104344010 -55255773 + (ATG)n Simple_repeat Simple_repeat 2 40 0 8 1381 295 234 202 61 chr3 104344020 104344134 -55255649 - B1F2 SINE Alu -18 131 2 8 1381 778 193 0 7 chr3 104344226 104344372 -55255411 + B1_Mur1 SINE Alu 3 147 -2 8 1381 240 35 0 0 chr3 104344378 104344407 -55255376 + (CAAA)n Simple_repeat Simple_repeat 4 32 0 8 1381 192 40 0 0 chr3 104345004 104345029 -55254754 + (A)n Simple_repeat Simple_repeat 1 25 0 8 1381 360 254 44 0 chr3 104345787 104345901 -55253882 - MER5A DNA MER1_type -7 182 64 8 1381 342 0 0 0 chr3 104346604 104346642 -55253141 + (TG)n Simple_repeat Simple_repeat 1 38 0 8 1381 246 116 0 0 chr3 104346676 104346719 -55253064 + (TTGG)n Simple_repeat Simple_repeat 1 43 0 8 1381 311 226 16 0 chr3 104346724 104346786 -55252997 - ID4 SINE ID 0 83 21 8 1381 967 172 192 11 chr3 104346916 104347098 -55252685 + B3 SINE B2 1 215 -1 8 1381 1223 35 7 0 chr3 104347101 104347245 -55252538 + B1_Mus2 SINE Alu 2 146 -1 8 1381 2159 0 0 0 chr3 104347366 104347603 -55252180 + L1Md_T LINE L1 6346 6582 0 8 1381 1425 78 21 0 chr3 104347634 104347825 -55251958 + B2_Mm2 SINE B2 1 195 0 8 1381 706 281 183 10 chr3 104347976 104348375 -55251408 + L1MA8 LINE L1 5360 5827 -464 8 1381 717 152 127 55 chr3 104348414 104348595 -55251188 + B2_Mm2 SINE B2 1 194 -1 8 1381 32 0 0 0 chr3 104348746 104348778 -55251005 + AT_rich Low_complexity Low_complexity 1 32 0 8 1381 528 263 15 0 chr3 104349103 104349236 -55250547 + RSINE1 SINE B4 5 139 -26 8 1381 273 228 27 163 chr3 104349482 104349629 -55250154 + MER57-int LTR ERV1 7138 7264 -273 8 1381 1135 88 0 0 chr3 104349969 104350116 -55249667 - B1_Mus1 SINE Alu 0 148 2 8 1381 466 168 212 0 chr3 104350218 104350331 -55249452 - B1_Mus1 SINE Alu -6 142 6 8 1381 1332 93 16 6 chr3 104350940 104351123 -55248660 + B2_Mm2 SINE B2 2 186 -9 8 1381 897 100 0 0 chr3 104351126 104351256 -55248527 + (GAAA)n Simple_repeat Simple_repeat 2 131 0 8 1381 309 26 0 0 chr3 104351329 104351367 -55248416 + (CA)n Simple_repeat Simple_repeat 2 39 0 8 1381 274 267 40 13 chr3 104351900 104351976 -55247807 + PB1D10 SINE Alu 27 104 -13 8 1381 202 250 18 0 chr3 104351991 104352047 -55247736 + (TATATG)n Simple_repeat Simple_repeat 4 60 0 8 1381 739 277 82 49 chr3 104352202 104352631 -55247152 - RMER5 LTR ERV1 -58 476 34 8 1381 1748 281 32 28 chr3 104352708 104353309 -55246474 - Tigger7 DNA MER2_type -603 1888 1286 8 1381 718 236 7 0 chr3 104353348 104353496 -55246287 - B1_Mur1 SINE Alu 0 149 1 8 1381 293 275 98 11 chr3 104353635 104353727 -55246056 - B3 SINE B2 -80 136 37 8 1381 614 197 8 8 chr3 104353704 104353837 -55245946 - Tigger7 DNA MER2_type -1322 1169 1037 8 1381 302 324 138 0 chr3 104353905 104354050 -55245733 - Tigger7 DNA MER2_type -1801 690 526 8 1381 277 363 10 10 chr3 104354109 104354212 -55245571 + ID_B1 SINE B4 74 176 -48 8 1381 405 286 10 0 chr3 104354123 104354221 -55245562 + PB1D10 SINE Alu 6 104 -13 8 1381 461 97 14 0 chr3 104354225 104354297 -55245486 + (GA)n Simple_repeat Simple_repeat 1 73 0 8 1381 379 327 0 0 chr3 104355124 104355231 -55244552 - PB1D10 SINE Alu -9 108 2 8 1381 236 275 30 81 chr3 104355453 104355552 -55244231 + RSINE1 SINE B4 3 96 -69 8 1381 479 45 0 15 chr3 104355678 104355745 -55244038 + (TTGG)n Simple_repeat Simple_repeat 2 67 0 8 1381 854 161 0 0 chr3 104355745 104355882 -55243901 - B1_Mus2 SINE Alu -8 139 3 8 1381 21 0 0 0 chr3 104356373 104356394 -55243389 + AT_rich Low_complexity Low_complexity 1 21 0 8 1381 590 226 24 8 chr3 104356403 104356528 -55243255 + B1_Mur1 SINE Alu 1 127 -22 8 1381 400 284 0 0 chr3 104356792 104356894 -55242889 + Charlie2b DNA MER1_type 36 137 -2645 8 1381 861 157 37 0 chr3 104357075 104357209 -55242574 - B1_Mus2 SINE Alu -8 139 1 8 1381 631 71 10 10 chr3 104357220 104357319 -55242464 + (TTCTC)n Simple_repeat Simple_repeat 2 100 0 8 1381 517 252 22 0 chr3 104357390 104357529 -55242254 - B1F SINE Alu -6 143 2 8 1381 242 279 35 33 chr3 104357627 104357743 -55242040 + B4 SINE B4 6 122 -43 8 1381 330 317 59 0 chr3 104358409 104358510 -55241273 - ID_B1 SINE B4 -39 185 79 8 1381 25 0 0 0 chr3 104358514 104358539 -55241244 + AT_rich Low_complexity Low_complexity 1 25 0 8 1381 249 220 17 0 chr3 104358748 104358807 -55240976 + MIRm SINE MIR 97 156 -120 8 1381 1222 47 0 0 chr3 104358858 104359006 -55240777 - B1_Mus1 SINE Alu 0 148 1 8 1381 308 236 181 11 chr3 104359013 104359107 -55240676 - B1F SINE Alu -8 141 32 8 1381 208 36 68 51 chr3 104359442 104359501 -55240282 + T-rich Low_complexity Low_complexity 6 65 0 8 1381 715 176 42 7 chr3 104359501 104359644 -55240139 - B1_Mur3 SINE Alu 0 149 2 8 1381 1318 86 17 0 chr3 104359931 104360106 -55239677 + B2_Mm2 SINE B2 3 180 -15 8 1381 31 20 0 38 chr3 104360112 104360131 -55239652 + AT_rich Low_complexity Low_complexity 1 19 0 8 1381 1077 76 21 0 chr3 104360131 104360275 -55239508 - B1_Mus1 SINE Alu 0 148 2 8 1381 31 20 0 38 chr3 104360275 104360308 -55239475 + AT_rich Low_complexity Low_complexity 1 32 0 8 1381 590 257 0 7 chr3 104360325 104360462 -55239321 + ID_B1 SINE B4 86 221 -3 8 1381 242 300 37 12 chr3 104360800 104360881 -55238902 - PB1D7 SINE Alu -35 85 3 8 1381 1288 84 15 40 chr3 104360937 104361135 -55238648 - B2_Mm2 SINE B2 0 195 3 8 1381 460 287 31 8 chr3 104361195 104361325 -55238458 + ID_B1 SINE B4 86 218 -6 8 1381 738 156 94 0 chr3 104361346 104361474 -55238309 + B1_Mus1 SINE Alu 1 140 -8 8 1381 655 175 14 7 chr3 104361493 104361637 -55238146 + GA-rich Low_complexity Low_complexity 4 148 0 8 1381 536 208 76 8 chr3 104361888 104362019 -55237764 - B1F2 SINE Alu -9 140 1 8 1381 213 221 33 65 chr3 104362419 104362511 -55237272 + CT-rich Low_complexity Low_complexity 1 89 0 8 1381 494 174 165 5 chr3 104363020 104363189 -55236594 - B3 SINE B2 -1 194 1 8 1381 24 0 0 0 chr3 104363198 104363222 -55236561 + AT_rich Low_complexity Low_complexity 1 24 0 8 1381 2546 155 80 6 chr3 104363365 104363852 -55235931 - RLTR28 LTR ERVL 0 524 2 8 1381 393 75 0 0 chr3 104363892 104363945 -55235838 + (GGA)n Simple_repeat Simple_repeat 3 55 0 8 1381 464 148 0 22 chr3 104363940 104364030 -55235753 + A-rich Low_complexity Low_complexity 5 92 0 8 1381 402 202 191 16 chr3 104364109 104364235 -55235548 + B1_Mur2 SINE Alu 2 149 0 8 1381 198 0 0 0 chr3 104364240 104364262 -55235521 + (CCA)n Simple_repeat Simple_repeat 2 23 0 8 1381 228 217 67 0 chr3 104364819 104364879 -55234904 + PB1D7 SINE Alu 21 84 -36 9 1381 351 0 0 0 chr3 104364973 104365012 -55234771 + (TG)n Simple_repeat Simple_repeat 1 39 0 9 1381 218 214 0 0 chr3 104365626 104365668 -55234115 + ID4_ SINE ID 4 45 -38 9 1381 1814 189 67 42 chr3 104365873 104366276 -55233507 + Lx5 LINE L1 6637 7049 -1 9 1381 454 259 137 0 chr3 104366317 104366448 -55233335 + B1F1 SINE Alu 1 149 0 9 1381 351 252 68 0 chr3 104367812 104367915 -55231868 + B1F SINE Alu 32 141 -8 9 1381 293 118 0 19 chr3 104367915 104367967 -55231816 + (GGAAA)n Simple_repeat Simple_repeat 1 51 0 9 1381 270 234 0 0 chr3 104368039 104368103 -55231680 + PB1 SINE Alu 44 107 -20 9 1381 819 80 0 0 chr3 104368124 104368236 -55231547 + (GAAA)n Simple_repeat Simple_repeat 2 113 0 9 1381 1183 61 0 7 chr3 104368239 104368388 -55231395 + B1_Mus1 SINE Alu 1 148 0 9 1381 308 136 34 0 chr3 104368391 104368450 -55231333 + GA-rich Low_complexity Low_complexity 2 62 0 9 1381 573 177 134 24 chr3 104368456 104368583 -55231200 + B1_Mur2 SINE Alu 4 144 -5 9 1381 980 116 0 0 chr3 104368586 104368724 -55231059 + B1_Mus1 SINE Alu 2 139 -9 9 1381 615 27 0 0 chr3 104368724 104368797 -55230986 + (GAAA)n Simple_repeat Simple_repeat 2 74 0 9 1381 258 109 70 35 chr3 104368869 104368926 -55230857 - PB1D10 SINE Alu -1 116 58 9 1381 189 275 81 81 chr3 104369159 104369270 -55230513 - MIRb SINE MIR -55 213 103 9 1381 1040 24 87 0 chr3 104370511 104370638 -55229145 + B1_Mm SINE Alu 1 138 -9 9 1381 267 200 8 33 chr3 104370674 104370743 -55229040 - PB1D7 SINE Alu -78 71 1 9 1381 264 122 0 0 chr3 104370775 104370816 -55228967 + (TTTA)n Simple_repeat Simple_repeat 1 41 0 9 1381 698 170 6 145 chr3 104370816 104370988 -55228795 - B1_Mur3 SINE Alu 0 149 2 9 1381 256 248 0 250 chr3 104370863 104371003 -55228780 - MT2B LTR ERVL -344 257 153 9 1381 189 0 0 0 chr3 104371114 104371135 -55228648 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 9 1381 354 229 21 25 chr3 104371144 104371262 -55228521 + PB1D7 SINE Alu 1 119 -1 9 1381 443 191 85 9 chr3 104371386 104371497 -55228286 - PB1 SINE Alu -91 220 25 9 1381 325 227 140 18 chr3 104371555 104371667 -55228116 - PB1D10 SINE Alu -1 116 1 9 1381 690 113 0 34 chr3 104372016 104372135 -55227648 + RMER1B Other Other 952 1066 0 9 1381 215 226 0 19 chr3 104372164 104372218 -55227565 - ID_B1 SINE B4 -88 136 84 9 1381 65 25 0 0 chr3 104372241 104372320 -55227463 + AT_rich Low_complexity Low_complexity 1 79 0 9 1381 529 202 138 8 chr3 104373066 104373196 -55226587 + B1_Mus1 SINE Alu 1 147 -1 9 1381 637 174 98 0 chr3 104373263 104373395 -55226388 + B1_Mur2 SINE Alu 5 149 0 9 1381 212 233 0 0 chr3 104373668 104373711 -55226072 + ID SINE ID 22 64 -160 9 1381 26 0 0 0 chr3 104373788 104373814 -55225969 + AT_rich Low_complexity Low_complexity 1 26 0 9 1381 21 36 0 0 chr3 104373849 104373877 -55225906 + AT_rich Low_complexity Low_complexity 1 28 0 9 1381 999 154 34 0 chr3 104373901 104374076 -55225707 + Lx4A LINE L1 6876 7056 -2 9 1381 372 303 0 39 chr3 104374128 104374231 -55225552 + PB1D10 SINE Alu 10 108 -9 9 1381 219 273 15 29 chr3 104374320 104374388 -55225395 + ID SINE ID 9 75 -149 9 1381 213 293 120 10 chr3 104374412 104374512 -55225271 + L3 LINE CR1 3153 3263 -1226 9 1381 265 284 0 0 chr3 104374511 104374585 -55225198 - L2c LINE L2 -1 3386 3313 9 1381 366 223 11 0 chr3 104374926 104375020 -55224763 + PB1D10 SINE Alu 2 96 -21 9 1381 378 222 0 0 chr3 104375060 104375150 -55224633 + GA-rich Low_complexity Low_complexity 4 93 0 9 1381 368 176 62 62 chr3 104375210 104375307 -55224476 + B1_Mur4 SINE Alu 42 138 -12 9 1381 239 71 24 0 chr3 104375313 104375355 -55224428 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 9 1381 203 348 0 0 chr3 104375915 104375984 -55223799 + L3 LINE CR1 3443 3511 -978 9 1381 468 179 95 0 chr3 104376309 104376404 -55223379 + B3 SINE B2 28 131 -85 9 1381 901 141 7 26 chr3 104376586 104376739 -55223044 + B1_Mur4 SINE Alu 1 150 0 9 1381 771 151 7 21 chr3 104376949 104377091 -55222692 - B1_Mus1 SINE Alu 0 148 9 9 1381 817 47 0 0 chr3 104377179 104377286 -55222497 - B1_Mus1 SINE Alu -40 108 2 9 1381 839 236 54 5 chr3 104378018 104378222 -55221561 + B3 SINE B2 3 216 0 9 1381 413 274 9 19 chr3 104378240 104378348 -55221435 + PB1D10 SINE Alu 3 109 -8 9 1381 357 207 161 0 chr3 104378455 104378542 -55221241 - PB1D10 SINE Alu -7 110 10 9 1381 590 239 144 31 chr3 104378824 104379018 -55220765 - ORR1D1 LTR MaLR -2 372 157 9 1381 296 176 0 0 chr3 104379056 104379092 -55220691 - ORR1D1 LTR MaLR -316 58 23 9 1381 625 147 29 19 chr3 104379092 104379225 -55220558 - ORR1D1-int LTR MaLR 0 1370 1256 9 1381 519 226 0 0 chr3 104379230 104379323 -55220460 + B1_Mus2 SINE Alu 3 95 -52 9 1381 839 161 86 0 chr3 104379324 104379498 -55220285 - ORR1D1-int LTR MaLR -1179 191 3 9 1381 1712 182 27 104 chr3 104379500 104379905 -55219878 - ORR1D1 LTR MaLR 0 374 1 9 1381 187 173 0 37 chr3 104380078 104380132 -55219651 + (CA)n Simple_repeat Simple_repeat 1 52 0 9 1381 584 304 89 32 chr3 104380148 104380396 -55219387 + B4A SINE B4 2 263 -29 9 1381 896 166 0 7 chr3 104380416 104380562 -55219221 - B1_Mur3 SINE Alu 0 149 5 9 1381 2068 90 94 0 chr3 104380607 104380906 -55218877 - ORR1A2 LTR MaLR 0 327 1 9 1381 450 0 0 0 chr3 104381157 104381207 -55218576 + (TG)n Simple_repeat Simple_repeat 2 51 0 9 1381 411 326 57 14 chr3 104381208 104381348 -55218435 - RSINE1 SINE B4 -17 148 3 9 1381 269 268 11 11 chr3 104381389 104381476 -55218307 + MER102c DNA MER1_type 245 331 0 9 1381 201 74 0 0 chr3 104381679 104381706 -55218077 + (GGGGA)n Simple_repeat Simple_repeat 2 28 0 9 1381 275 363 62 39 chr3 104381838 104381967 -55217816 - L2b LINE L2 -1 3374 3243 9 1381 225 0 0 0 chr3 104381973 104381998 -55217785 + (CAA)n Simple_repeat Simple_repeat 2 26 0 9 1381 677 215 72 24 chr3 104381998 104382165 -55217618 - ID_B1 SINE B4 -18 206 32 9 1381 306 360 21 43 chr3 104382396 104382582 -55217201 + MamSINE1 SINE tRNA 1 182 -108 9 1381 246 282 13 13 chr3 104382744 104382849 -55216934 + CT-rich Low_complexity Low_complexity 1 105 0 9 1381 1083 101 6 22 chr3 104382849 104383032 -55216751 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 9 1381 332 218 56 33 chr3 104383052 104383142 -55216641 - B1F2 SINE Alu -56 93 2 9 1381 504 268 16 31 chr3 104383487 104383614 -55216169 + ID_B1 SINE B4 81 205 -19 9 1381 396 0 0 0 chr3 104383853 104383897 -55215886 + (TG)n Simple_repeat Simple_repeat 2 45 0 9 1381 726 192 0 0 chr3 104384113 104384259 -55215524 + CT-rich Low_complexity Low_complexity 3 148 0 9 1381 461 163 218 8 chr3 104384266 104384390 -55215393 - B1_Mur4 SINE Alu 0 150 1 9 1381 634 248 251 20 chr3 104384632 104384978 -55214805 + L1MC4 LINE L1 7202 7627 -415 9 1381 233 254 34 0 chr3 104384979 104385038 -55214745 + ID4_ SINE ID 21 81 -2 9 1381 3198 57 75 22 chr3 104385144 104385595 -55214188 - IAPLTR2_Mm LTR ERVK 0 475 1 9 1381 1470 39 55 0 chr3 104385673 104385855 -55213928 + B2_Mm1a SINE B2 2 193 0 9 1381 1074 102 0 13 chr3 104385875 104386024 -55213759 - B1_Mur4 SINE Alu -2 148 2 9 1381 213 39 0 0 chr3 104386133 104386159 -55213624 + (TTTG)n Simple_repeat Simple_repeat 4 29 0 9 1381 507 226 69 9 chr3 104386159 104386275 -55213508 - B1_Mur1 SINE Alu -14 135 13 9 1381 737 92 0 0 chr3 104386275 104386384 -55213399 + B1_Mur4 SINE Alu 37 145 -5 9 1381 304 265 46 100 chr3 104386276 104386406 -55213377 + B4 SINE B4 122 244 -48 9 1381 3822 107 73 0 chr3 104387740 104388300 -55211483 - MT2B LTR ERVL 0 601 1 9 1381 515 250 22 22 chr3 104388420 104388559 -55211224 + B1F SINE Alu 1 139 -10 9 1381 22 0 0 0 chr3 104388572 104388594 -55211189 + AT_rich Low_complexity Low_complexity 1 22 0 9 1381 502 273 9 104 chr3 104388636 104388815 -55210968 - ID_B1 SINE B4 -46 246 81 9 1381 413 141 0 27 chr3 104389003 104389076 -55210707 - B1_Mur2 SINE Alu 0 149 79 9 1381 403 355 56 7 chr3 104389103 104389245 -55210538 + RSINE1 SINE B4 2 150 -15 9 1381 547 338 76 50 chr3 104389439 104389941 -55209842 - MLT2B3 LTR ERVL -3 551 37 9 1381 1538 194 86 67 chr3 104390013 104390445 -55209338 + RMER10A LTR ERVL 3 442 0 9 1381 24 0 0 0 chr3 104390574 104390598 -55209185 + AT_rich Low_complexity Low_complexity 1 24 0 9 1381 640 173 107 50 chr3 104390722 104390862 -55208921 + B1_Mur1 SINE Alu 2 149 0 9 1381 554 212 42 0 chr3 104390873 104390991 -55208792 + RSINE1 SINE B4 3 125 -40 9 1381 699 206 20 27 chr3 104391001 104391151 -55208632 - B1_Mur1 SINE Alu 0 149 1 9 1381 1660 31 0 10 chr3 104391219 104391413 -55208370 + B2_Mm1a SINE B2 2 193 0 9 1381 708 98 0 0 chr3 104391413 104391515 -55208268 + (GGAA)n Simple_repeat Simple_repeat 3 104 0 9 1381 516 188 138 15 chr3 104391528 104391658 -55208125 + B1F SINE Alu 1 146 -3 9 1381 236 236 12 100 chr3 104391691 104391771 -55208012 + MT2B2 LTR ERVL 159 231 -353 9 1381 608 198 24 0 chr3 104391701 104391827 -55207956 + B1_Mur1 SINE Alu 6 134 -15 9 1381 414 0 0 0 chr3 104391833 104391879 -55207904 + (TG)n Simple_repeat Simple_repeat 2 47 0 9 1381 740 267 62 0 chr3 104391904 104392099 -55207684 + ID_B1 SINE B4 17 223 -1 9 1381 2854 19 5 97 chr3 104392112 104392516 -55207267 - IAPLTR1_Mm LTR ERVK 0 367 1 9 1381 54891 31 17 6 chr3 104392516 104398916 -55200867 - IAPEz-int LTR ERVK 0 6481 8 9 1381 2854 19 5 97 chr3 104398916 104399320 -55200463 - IAPLTR1_Mm LTR ERVK 0 367 1 9 1381 350 200 0 0 chr3 104399588 104399658 -55200125 + PB1 SINE Alu 25 94 -33 9 1381 22 35 0 0 chr3 104399666 104399695 -55200088 + AT_rich Low_complexity Low_complexity 1 29 0 1 1381 756 177 0 33 chr3 104399700 104399852 -55199931 + B1_Mur3 SINE Alu 3 149 0 1 1381 546 248 8 25 chr3 104400220 104400340 -55199443 + PB1D7 SINE Alu 3 120 0 1 1381 24 32 0 0 chr3 104401616 104401647 -55198136 + AT_rich Low_complexity Low_complexity 1 31 0 1 1381 386 149 45 0 chr3 104401757 104401824 -55197959 - B1_Mur2 SINE Alu -8 141 72 1 1381 1686 184 98 13 chr3 104401826 104402205 -55197578 - MTD LTR MaLR -8 411 1 1 1381 223 222 0 0 chr3 104402233 104402269 -55197514 - PB1D9 SINE Alu -84 36 1 1 1381 257 241 0 0 chr3 104402387 104402445 -55197338 - B3A SINE B2 -84 114 57 1 1381 603 222 0 45 chr3 104402442 104402574 -55197209 - B1F2 SINE Alu -22 127 2 1 1381 638 277 31 6 chr3 104402653 104402813 -55196970 - Lx8 LINE L1 -150 7323 7160 1 1381 469 236 9 0 chr3 104403901 104404007 -55195776 - RSINE1 SINE B4 -37 128 22 1 1381 339 255 177 21 chr3 104404066 104404162 -55195621 - B1_Mur4 SINE Alu -32 118 5 1 1381 226 233 151 0 chr3 104404369 104404442 -55195341 - BC1_Mm scRNA scRNA -61 91 8 1 1381 189 0 0 0 chr3 104405056 104405077 -55194706 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 1 1381 527 196 0 93 chr3 104405080 104405198 -55194585 - U6 snRNA snRNA 0 107 1 1 1381 359 328 9 0 chr3 104405202 104405318 -55194465 - PB1D10 SINE Alu 0 117 1 1 1381 384 132 0 0 chr3 104406025 104406108 -55193675 + (T)n Simple_repeat Simple_repeat 1 83 0 1 1381 581 282 87 17 chr3 104406130 104406361 -55193422 + B4A SINE B4 2 248 -44 1 1381 283 239 93 52 chr3 104406373 104406420 -55193363 + B1_Mus1 SINE Alu 3 53 -95 1 1381 682 82 0 0 chr3 104406420 104406513 -55193270 + MT2B LTR ERVL 3 95 -506 1 1381 8197 129 103 113 chr3 104406513 104407741 -55192042 + ORR1A4-int LTR MaLR 1 1412 -551 1 1381 3190 6 0 3 chr3 104407741 104408088 -55191695 + ORR1A0 LTR MaLR 1 346 0 1 1381 8197 129 103 113 chr3 104408088 104408840 -55190943 + ORR1A4-int LTR MaLR 1413 1963 0 1 1381 1761 128 24 60 chr3 104408840 104409173 -55190610 + ORR1A4 LTR MaLR 1 321 -8 1 1381 638 135 19 0 chr3 104409173 104409277 -55190506 + B1_Mur3 SINE Alu 42 147 -2 1 1381 314 107 18 0 chr3 104409277 104409333 -55190450 + (CAAA)n Simple_repeat Simple_repeat 1 57 0 1 1381 235 0 57 0 chr3 104409731 104409766 -55190017 + (CAAAA)n Simple_repeat Simple_repeat 4 40 0 1 1381 256 187 104 26 chr3 104410360 104410437 -55189346 - RMER15 LTR ERVL -471 104 22 1 1381 580 190 13 138 chr3 104410486 104410645 -55189138 - B1_Mus1 SINE Alu -8 140 2 1 1381 944 176 0 0 chr3 104410705 104410853 -55188930 - B1_Mur2 SINE Alu -1 148 1 1 1381 558 251 144 43 chr3 104410991 104411178 -55188605 + ID_B1 SINE B4 15 220 -4 1 1381 873 161 28 0 chr3 104411237 104411380 -55188403 + B1_Mus1 SINE Alu 2 148 0 1 1381 519 17 0 0 chr3 104411411 104411471 -55188312 + (TC)n Simple_repeat Simple_repeat 1 60 0 1 1381 506 315 86 43 chr3 104411772 104411958 -55187825 - B3A SINE B2 -4 194 1 1 1381 260 333 14 0 chr3 104411972 104412044 -55187739 - ID4 SINE ID 0 83 11 1 1381 661 332 62 7 chr3 104412635 104412926 -55186857 + Kanga1a DNA Tc2 1 307 -447 1 1381 2429 98 3 3 chr3 104412963 104413290 -55186493 + ORR1A2 LTR MaLR 1 327 0 1 1381 919 207 6 16 chr3 104413307 104413501 -55186282 + B3 SINE B2 2 186 -9 1 1381 278 271 0 12 chr3 104413566 104413652 -55186131 + B1_Mur1 SINE Alu 65 149 0 1 1381 243 274 79 9 chr3 104413813 104413927 -55185856 + Kanga1a DNA Tc2 467 588 -166 1 1381 268 304 25 0 chr3 104413932 104414011 -55185772 + ID4_ SINE ID 2 82 -1 1 1381 754 165 52 15 chr3 104414740 104414875 -55184908 + B1_Mus2 SINE Alu 1 140 -7 1 1381 608 288 141 46 chr3 104414896 104415180 -55184603 + MLT1A1 LTR MaLR 73 383 -25 1 1381 231 235 39 19 chr3 104415210 104415262 -55184521 - RSINE1 SINE B4 -2 163 111 1 1381 480 237 8 26 chr3 104415312 104415429 -55184354 - PB1D7 SINE Alu 0 120 6 1 1381 366 256 93 82 chr3 104415434 104415466 -55184317 - B2_Mm2 SINE B2 0 195 164 1 1381 240 86 0 0 chr3 104415466 104415501 -55184282 + (TG)n Simple_repeat Simple_repeat 1 35 0 1 1381 504 256 93 82 chr3 104415501 104415651 -55184132 - B3A SINE B2 -32 163 11 1 1381 751 204 216 28 chr3 104415688 104415869 -55183914 + B3 SINE B2 2 216 0 1 1381 2092 284 124 106 chr3 104415901 104416330 -55183453 + MLT1A1-int LTR MaLR 3 422 -1313 1 1381 380 20 0 20 chr3 104416330 104416380 -55183403 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 1381 2092 284 124 106 chr3 104416380 104417652 -55182131 + MLT1A1-int LTR MaLR 423 1735 0 1 1381 638 239 118 36 chr3 104417652 104417966 -55181817 + MLT1A1 LTR MaLR 1 330 -35 1 1381 384 328 9 0 chr3 104417966 104418082 -55181701 - PB1D10 SINE Alu 0 117 1 1 1381 615 282 89 72 chr3 104418082 104418126 -55181657 + MLT1A1 LTR MaLR 331 365 0 1 1381 236 241 60 48 chr3 104418227 104418310 -55181473 - MLT1J LTR MaLR -314 198 115 1 1381 333 207 127 9 chr3 104418308 104418416 -55181367 - PB1D9 SINE Alu -27 122 3 1 1381 422 288 0 0 chr3 104418579 104418690 -55181093 + B1F SINE Alu 32 142 -7 1 1381 455 228 30 0 chr3 104418893 104418994 -55180789 - PB1D10 SINE Alu -9 108 5 1 1381 407 300 92 0 chr3 104419032 104419152 -55180631 - ID_B1 SINE B4 0 224 94 1 1381 361 325 83 12 chr3 104419230 104419398 -55180385 + MLT-int LTR MaLR 1107 1286 -449 1 1381 194 340 94 43 chr3 104419664 104419996 -55179787 - L2a LINE L2 -2 3424 3049 1 1381 804 136 34 48 chr3 104420784 104420931 -55178852 + B1_Mur4 SINE Alu 5 149 -1 1 1381 206 118 0 0 chr3 104420933 104420967 -55178816 + (A)n Simple_repeat Simple_repeat 1 34 0 1 1381 1014 236 0 0 chr3 104421272 104421480 -55178303 + B3 SINE B2 2 209 -7 1 1381 294 296 0 47 chr3 104421534 104421619 -55178164 + ID4_ SINE ID 1 81 -2 1 1381 261 0 0 0 chr3 104421719 104421748 -55178035 + (CAAA)n Simple_repeat Simple_repeat 1 29 0 1 1381 362 106 15 0 chr3 104422311 104422377 -55177406 + L1_Mus2 LINE L1 6499 6565 -1 1 1381 506 235 140 0 chr3 104422467 104422603 -55177180 - RSINE1 SINE B4 -4 161 7 1 1381 498 17 0 0 chr3 104423093 104423152 -55176631 + (TG)n Simple_repeat Simple_repeat 2 60 0 1 1381 398 271 0 0 chr3 104423162 104423247 -55176536 - B3A SINE B2 -57 141 57 1 1381 789 171 0 8 chr3 104423259 104423389 -55176394 - B1_Mur2 SINE Alu -19 130 2 1 1381 354 171 0 103 chr3 104423394 104423472 -55176311 - ID4 SINE ID -13 70 1 1 1381 2561 171 49 12 chr3 104423730 104424239 -55175544 - RLTR11A LTR ERVK 0 528 1 1 1381 366 80 0 0 chr3 104424307 104424357 -55175426 + (TTG)n Simple_repeat Simple_repeat 3 52 0 1 1381 277 355 22 11 chr3 104424373 104424464 -55175319 + RSINE1 SINE B4 3 94 -71 1 1381 780 151 14 28 chr3 104424464 104424607 -55175176 + B1_Mus1 SINE Alu 1 141 -7 1 1381 570 67 0 0 chr3 104424675 104424750 -55175033 + (GGGA)n Simple_repeat Simple_repeat 4 78 0 1 1381 1408 201 307 8 chr3 104424828 104425223 -55174560 - RMER15 LTR ERVL -3 572 61 1 1381 307 263 35 2 chr3 104425213 104425307 -55174476 - B1_Mus1 SINE Alu -52 95 1 1 1381 256 77 0 71 chr3 104425310 104425352 -55174431 - RMER15 LTR ERVL -510 65 27 1 1381 1265 124 75 75 chr3 104425365 104425591 -55174192 + URR1A DNA MER1_type 1 226 0 1 1381 771 263 26 5 chr3 104425700 104425891 -55173892 - B3 SINE B2 -2 214 20 1 1381 373 180 0 16 chr3 104426021 104426113 -55173670 - B1F SINE Alu -7 142 24 1 1381 303 212 0 0 chr3 104426143 104426223 -55173560 + T-rich Low_complexity Low_complexity 1 80 0 1 1381 279 0 0 0 chr3 104426223 104426254 -55173529 + (GGGTG)n Simple_repeat Simple_repeat 2 32 0 1 1381 759 41 0 0 chr3 104426264 104426362 -55173421 - B1_Mus2 SINE Alu -8 139 42 1 1381 264 192 59 82 chr3 104426299 104426384 -55173399 - RLTR25B LTR ERVK -519 509 427 1 1381 450 239 0 0 chr3 104426401 104426577 -55173206 + CT-rich Low_complexity Low_complexity 2 177 0 1 1381 288 169 0 78 chr3 104426582 104426646 -55173137 - B1_Mus1 SINE Alu -88 60 2 1 1381 720 157 0 73 chr3 104426651 104426802 -55172981 - B1_Mur3 SINE Alu -1 148 9 1 1381 1091 36 0 42 chr3 104427310 104427453 -55172330 + B1_Mus1 SINE Alu 1 137 -11 1 1381 973 217 10 10 chr3 104428245 104428454 -55171329 + B3 SINE B2 2 210 -6 1 1381 738 150 102 0 chr3 104428474 104428601 -55171182 - B1_Mur4 SINE Alu -9 141 2 1 1381 23 0 0 0 chr3 104428604 104428627 -55171156 + AT_rich Low_complexity Low_complexity 1 23 0 1 1381 350 304 0 11 chr3 104428634 104428727 -55171056 - PB1D10 SINE Alu -6 111 20 1 1381 337 109 0 0 chr3 104428744 104428790 -55170993 - RSINE1 SINE B4 -38 127 82 1 1381 3605 13 2 0 chr3 104428855 104429250 -55170533 + MTA_Mm LTR MaLR 1 396 0 1 1381 9543 25 2 1 chr3 104429250 104430347 -55169436 + MTA_Mm-int LTR MaLR 1 1098 0 1 1381 3605 13 2 0 chr3 104430347 104430742 -55169041 + MTA_Mm LTR MaLR 1 396 0 1 1381 855 165 56 76 chr3 104430778 104430975 -55168808 + B3A SINE B2 1 193 -5 1 1381 193 121 11 88 chr3 104430984 104431075 -55168708 + A-rich Low_complexity Low_complexity 4 87 0 1 1381 313 216 66 33 chr3 104431094 104431185 -55168598 + PB1D10 SINE Alu 23 116 -1 1 1381 919 189 218 58 chr3 104431626 104431952 -55167831 - MTE2a LTR MaLR 0 379 2 1 1381 277 255 18 70 chr3 104432131 104432245 -55167538 + PB1 SINE Alu 1 108 -19 1 1381 495 51 38 0 chr3 104432247 104432326 -55167457 + (TCTA)n Simple_repeat Simple_repeat 3 84 0 1 1381 549 216 43 35 chr3 104432349 104432464 -55167319 - B1_Mur1 SINE Alu -32 117 2 1 1381 401 216 68 10 chr3 104432494 104432597 -55167186 + PB1D10 SINE Alu 9 117 0 1 1381 542 275 1 68 chr3 104433401 104433480 -55166303 + ID_B1 SINE B4 80 154 -138 1 1381 1251 112 90 33 chr3 104433480 104433692 -55166091 - URR1B DNA MER1_type -1 224 1 1 1381 542 289 11 81 chr3 104433692 104433791 -55165992 + ID_B1 SINE B4 154 246 -46 1 1381 342 0 0 0 chr3 104434072 104434110 -55165673 + (GGGA)n Simple_repeat Simple_repeat 1 38 0 1 1381 510 168 0 144 chr3 104434371 104434503 -55165280 + B1_Mus1 SINE Alu 36 148 0 1 1381 585 236 16 16 chr3 104434602 104434731 -55165052 - RSINE1 SINE B4 -34 131 3 1 1381 562 289 141 8 chr3 104435100 104435355 -55164428 - B4A SINE B4 0 292 4 1 1381 306 331 8 24 chr3 104435387 104435511 -55164272 - RSINE1 SINE B4 0 165 44 1 1381 1016 38 0 0 chr3 104435653 104435786 -55163997 - B1_Mus1 SINE Alu -10 138 6 1 1381 221 333 103 19 chr3 104435901 104436008 -55163775 - PB1D10 SINE Alu -1 116 1 1 1381 259 283 0 0 chr3 104436120 104436180 -55163603 - ID4 SINE ID -1 82 23 1 1381 21 36 0 0 chr3 104436428 104436456 -55163327 + AT_rich Low_complexity Low_complexity 1 28 0 1 1381 234 0 0 0 chr3 104437638 104437664 -55162119 + (TA)n Simple_repeat Simple_repeat 2 27 0 1 1381 654 200 40 0 chr3 104437693 104437818 -55161965 - B3 SINE B2 -86 130 1 1 1381 331 299 86 21 chr3 104437848 104437988 -55161795 - B1F1 SINE Alu 0 149 1 1 1381 431 304 26 0 chr3 104438086 104438201 -55161582 - PB1D9 SINE Alu 0 120 3 1 1381 22 70 0 0 chr3 104438205 104438248 -55161535 + AT_rich Low_complexity Low_complexity 1 43 0 1 1381 483 222 111 0 chr3 104438945 104439053 -55160730 + RSINE1 SINE B4 15 134 -31 1 1381 32 43 0 0 chr3 104439053 104439099 -55160684 + AT_rich Low_complexity Low_complexity 1 46 0 1 1381 618 140 0 0 chr3 104439724 104439824 -55159959 - B1_Mur3 SINE Alu -1 148 49 1 1381 31 0 0 0 chr3 104439945 104439976 -55159807 + AT_rich Low_complexity Low_complexity 1 31 0 1 1381 1460 49 0 26 chr3 104439976 104440166 -55159617 - B2_Mm2 SINE B2 -9 186 2 1 1381 223 298 103 92 chr3 104440198 104440383 -55159400 - MIRc SINE MIR -79 189 3 1 1381 235 292 0 0 chr3 104440589 104440654 -55159129 - ID2 SINE ID -1 82 18 1 1381 893 26 8 0 chr3 104440887 104441004 -55158779 - B1_Mm SINE Alu 0 147 30 1 1381 648 197 34 27 chr3 104441191 104441337 -55158446 + B1_Mur1 SINE Alu 3 149 0 1 1381 395 207 22 54 chr3 104441403 104441495 -55158288 + B1_Mur1 SINE Alu 61 149 0 1 1381 24 0 0 0 chr3 104442399 104442423 -55157360 + GC_rich Low_complexity Low_complexity 1 24 0 1 1381 253 247 0 138 chr3 104443684 104443778 -55156005 + ID4_ SINE ID 3 83 0 1 1381 267 31 0 0 chr3 104443999 104444031 -55155752 + (TG)n Simple_repeat Simple_repeat 1 32 0 1 1381 351 0 0 0 chr3 104444031 104444069 -55155714 + (GA)n Simple_repeat Simple_repeat 1 39 0 1 1381 709 150 62 23 chr3 104444278 104444408 -55155375 - B1_Mus2 SINE Alu -10 137 3 1 1381 227 189 26 39 chr3 104445798 104445875 -55153908 - L1MC5 LINE L1 -315 7646 7571 1 1381 358 275 71 64 chr3 104446292 104446310 -55153473 - B1_Mur3 SINE Alu -3 146 6 1 1381 509 235 16 57 chr3 104446310 104446432 -55153351 - ID_B1 SINE B4 -21 203 87 1 1381 212 243 0 0 chr3 104446470 104446507 -55153276 - B4 SINE B4 -208 84 48 1 1381 227 206 0 0 chr3 104446474 104446508 -55153275 - RSINE1 SINE B4 -84 81 48 1 1381 296 310 59 12 chr3 104446910 104446995 -55152788 - ID_B1 SINE B4 -127 97 9 1 1381 479 208 22 2 chr3 104447049 104447156 -55152627 + B1_Mur2 SINE Alu 17 124 -25 1 1381 1023 260 108 30 chr3 104447668 104448001 -55151782 - ORR1E LTR MaLR 0 359 1 1 1381 416 316 14 7 chr3 104448042 104448182 -55151601 + RSINE1 SINE B4 19 159 -6 1 1381 566 206 10 0 chr3 104448286 104448388 -55151395 - B1_Mus1 SINE Alu -7 141 39 1 1381 553 214 86 0 chr3 104448424 104448541 -55151242 - RSINE1 SINE B4 -36 129 3 1 1381 231 135 39 0 chr3 104448936 104448988 -55150795 - FAM SINE Alu 0 315 262 1 1381 545 201 103 35 chr3 104448944 104449095 -55150688 - ID_B1 SINE B4 0 224 65 1 1381 189 107 0 0 chr3 104449782 104449810 -55149973 + (A)n Simple_repeat Simple_repeat 1 28 0 1 1381 438 221 52 18 chr3 104449832 104449957 -55149826 - L1MA9 LINE L1 -226 5936 5804 1 1381 329 363 109 15 chr3 104449979 104450116 -55149667 - RSINE1 SINE B4 -2 163 14 1 1381 231 305 17 0 chr3 104450137 104450196 -55149587 + PB1 SINE Alu 1 60 -67 1 1381 503 16 16 0 chr3 104450456 104450520 -55149263 + (TC)n Simple_repeat Simple_repeat 2 66 0 1 1381 562 246 17 17 chr3 104450906 104451022 -55148761 - B3A SINE B2 -80 118 3 1 1381 408 291 73 15 chr3 104451044 104451180 -55148603 - B1_Mus2 SINE Alu -2 145 2 1 1381 248 326 67 22 chr3 104452189 104452324 -55147459 + Charlie2b DNA MER1_type 198 338 -2444 1 1381 461 305 45 15 chr3 104452523 104452656 -55147127 + ID_B1 SINE B4 78 214 -10 1 1381 217 227 0 0 chr3 104453020 104453064 -55146719 - B1_Mur1 SINE Alu -8 141 98 1 1381 341 336 64 45 chr3 104454300 104454456 -55145327 - MLT1A0 LTR MaLR -177 188 30 1 1381 282 280 212 0 chr3 104455037 104455169 -55144614 + RSINE1 SINE B4 6 165 0 1 1381 554 162 46 37 chr3 104455177 104455286 -55144497 - B1_Mur1 SINE Alu 0 149 40 1 1381 286 236 40 27 chr3 104455220 104455294 -55144489 - RLTR25B LTR ERVK -521 507 433 1 1381 3488 30 2 0 chr3 104455295 104455690 -55144093 + MTA_Mm LTR MaLR 1 396 0 1 1381 499 112 210 0 chr3 104455797 104455903 -55143880 + B1_Mus1 SINE Alu 1 126 -21 1 1381 281 290 57 14 chr3 104456478 104456548 -55143235 - B3A SINE B2 -57 141 69 1 1381 578 188 82 95 chr3 104457839 104457858 -55141925 - B1_Mur4 SINE Alu -5 145 129 1 1381 267 54 0 0 chr3 104457858 104457895 -55141888 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 1 1381 580 224 94 16 chr3 104457895 104458022 -55141761 - B1_Mus1 SINE Alu -11 137 1 1 1381 216 250 14 72 chr3 104458031 104458100 -55141683 + B4A SINE B4 81 145 -147 1 1381 471 219 31 10 chr3 104458050 104458147 -55141636 + PB1D10 SINE Alu 10 108 -9 1 1381 313 327 71 0 chr3 104458188 104458301 -55141482 - ID_B1 SINE B4 -13 211 91 1 1381 212 356 69 0 chr3 104458878 104458979 -55140804 + MIRb SINE MIR 49 156 -112 1 1381 201 279 111 25 chr3 104459076 104459157 -55140626 + MIR3 SINE MIR 82 169 -39 1 1381 340 188 0 80 chr3 104460544 104460619 -55139164 - tRNA-Ala-GCY_ tRNA tRNA -5 70 2 1 1381 656 192 109 3 chr3 104462228 104462487 -55137296 - Lx9 LINE L1 0 7644 7334 1 1381 518 206 31 0 chr3 104462518 104462615 -55137168 - PB1D9 SINE Alu -6 114 15 1 1381 568 116 88 9 chr3 104462887 104463000 -55136783 - B1_Mur2 SINE Alu -7 142 21 1 1381 322 296 0 0 chr3 104463497 104463578 -55136205 - ID2 SINE ID 0 83 3 1 1381 191 88 0 29 chr3 104463589 104463624 -55136159 + (GTTTG)n Simple_repeat Simple_repeat 3 36 0 1 1381 246 296 69 14 chr3 104463681 104463753 -55136030 - ID4_ SINE ID -6 77 2 1 1381 523 187 212 0 chr3 104464073 104464197 -55135586 + B1_Mus1 SINE Alu 1 148 0 1 1381 353 227 0 217 chr3 104464091 104464243 -55135540 + ID_B1 SINE B4 100 218 -6 1 1382 699 255 58 16 chr3 104464823 104465014 -55134769 - ID_B1 SINE B4 -21 203 5 1 1382 192 152 0 0 chr3 104465085 104465118 -55134665 + A-rich Low_complexity Low_complexity 2 34 0 1 1382 278 232 157 12 chr3 104465126 104465209 -55134574 + B1F SINE Alu 3 97 -52 1 1382 359 209 185 48 chr3 104465274 104465420 -55134363 + B4 SINE B4 106 271 -21 1 1382 317 172 247 0 chr3 104465481 104465574 -55134209 + PB1D9 SINE Alu 5 120 0 1 1382 478 168 148 0 chr3 104466313 104466414 -55133369 + RSINE1 SINE B4 6 121 -44 1 1382 486 188 31 0 chr3 104466461 104466557 -55133226 + PB1D9 SINE Alu 22 120 0 1 1382 22 0 0 0 chr3 104466847 104466869 -55132914 + AT_rich Low_complexity Low_complexity 1 22 0 1 1382 360 166 259 58 chr3 104467556 104467659 -55132124 + B1_Mm SINE Alu 6 125 -22 1 1382 228 314 100 44 chr3 104467675 104467765 -55132018 - MER21B LTR ERV1 -4 859 765 1 1382 250 241 0 85 chr3 104468227 104468286 -55131497 + ID4_ SINE ID 12 65 -18 1 1382 392 230 116 54 chr3 104468500 104468629 -55131154 + ID_B1 SINE B4 3 139 -85 1 1382 189 0 0 0 chr3 104468805 104468826 -55130957 + (T)n Simple_repeat Simple_repeat 1 21 0 1 1382 1208 68 0 0 chr3 104468826 104468973 -55130810 - B1_Mus2 SINE Alu 0 147 1 1 1382 334 256 0 0 chr3 104469008 104469098 -55130685 + MER34B-int LTR ERV1 1979 2068 -3288 1 1382 501 250 73 66 chr3 104469112 104469249 -55130534 + B1_Mur2 SINE Alu 6 143 -6 1 1382 1128 42 0 0 chr3 104469263 104469405 -55130378 + B1_Mus1 SINE Alu 7 148 0 1 1382 715 255 30 30 chr3 104469566 104469764 -55130019 + B3A SINE B2 1 198 0 1 1382 328 183 16 48 chr3 104469790 104469839 -55129944 - L1MEg LINE L1 -4141 1943 1895 1 1382 1261 34 0 0 chr3 104469839 104469986 -55129797 - B1_Mus2 SINE Alu 0 147 1 1 1382 328 183 16 48 chr3 104469986 104469999 -55129784 - L1MEg LINE L1 -4190 1894 1883 1 1382 1293 62 28 11 chr3 104470048 104470226 -55129557 - B2_Mm2 SINE B2 0 195 15 1 1382 1052 195 51 51 chr3 104470404 104470696 -55129087 + B4A SINE B4 1 292 0 1 1382 234 91 0 0 chr3 104470895 104470928 -55128855 + (TAAA)n Simple_repeat Simple_repeat 1 33 0 1 1382 243 0 0 0 chr3 104471303 104471330 -55128453 + (T)n Simple_repeat Simple_repeat 1 27 0 1 1382 207 0 0 0 chr3 104471517 104471540 -55128243 + (CTCTG)n Simple_repeat Simple_repeat 3 25 0 1 1382 715 221 14 14 chr3 104471668 104471815 -55127968 - B1_Mur1 SINE Alu -2 147 1 1 1382 33 43 0 0 chr3 104471818 104471865 -55127918 + AT_rich Low_complexity Low_complexity 1 47 0 1 1382 719 186 8 0 chr3 104471875 104472004 -55127779 - B3 SINE B2 -86 130 1 1 1382 387 339 75 40 chr3 104472046 104472165 -55127618 + ID_B1 SINE B4 1 122 -102 1 1382 977 110 215 21 chr3 104472165 104472351 -55127432 - URR1A DNA MER1_type 0 226 5 1 1382 387 339 75 40 chr3 104472351 104472431 -55127352 + ID_B1 SINE B4 123 207 -17 1 1382 938 63 8 0 chr3 104472438 104472564 -55127219 + B1_Mus1 SINE Alu 22 148 0 1 1382 848 241 133 39 chr3 104472609 104472864 -55126919 + B4A SINE B4 2 280 -12 1 1382 1354 191 22 19 chr3 104472890 104473157 -55126626 - Lx5 LINE L1 -98 6952 6685 1 1382 747 245 0 0 chr3 104473208 104473347 -55126436 - B1_Mur2 SINE Alu 0 149 11 1 1382 750 141 34 0 chr3 104473354 104473503 -55126280 + CT-rich Low_complexity Low_complexity 3 156 0 1 1382 740 222 107 11 chr3 104473563 104473750 -55126033 - B4A SINE B4 -86 206 2 1 1382 281 287 67 38 chr3 104474218 104474323 -55125460 + MIRc SINE MIR 14 121 -147 1 1382 218 122 0 24 chr3 104475035 104475077 -55124706 + (TGGGGG)n Simple_repeat Simple_repeat 2 42 0 1 1382 202 341 110 63 chr3 104475238 104475601 -55124182 - L2 LINE L2 -371 3048 2669 1 1382 379 298 0 0 chr3 104476386 104476483 -55123300 - ID4 SINE ID -54 98 2 1 1382 903 171 14 0 chr3 104476506 104476652 -55123131 - B1_Mur4 SINE Alu -2 148 1 1 1382 547 236 154 0 chr3 104476664 104476787 -55122996 + B3A SINE B2 1 142 -56 1 1382 1241 54 0 0 chr3 104476828 104476976 -55122807 + B1_Mus1 SINE Alu 1 148 0 1 1382 1423 44 56 0 chr3 104477001 104477181 -55122602 - B2_Mm2 SINE B2 -3 192 3 1 1382 251 241 93 35 chr3 104477341 104477427 -55122356 - RSINE1 SINE B4 -1 164 74 1 1382 391 246 62 18 chr3 104477494 104477606 -55122177 - PB1D10 SINE Alu 0 117 1 1 1382 311 265 121 10 chr3 104477649 104477748 -55122035 - PB1 SINE Alu -15 112 3 1 1382 224 30 0 29 chr3 104477870 104477904 -55121879 + (TTTTG)n Simple_repeat Simple_repeat 3 35 0 1 1382 375 316 17 0 chr3 104477904 104477916 -55121867 - ID_B1 SINE B4 -15 209 91 1 1382 520 219 38 0 chr3 104477916 104478021 -55121762 - B1F SINE Alu -31 118 10 1 1382 217 180 128 104 chr3 104478177 104478261 -55121522 - BC1_Mm scRNA scRNA -68 84 1 1 1382 209 57 29 0 chr3 104480184 104480219 -55119564 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 1 1382 1251 27 7 0 chr3 104480224 104480370 -55119413 - B1_Mm SINE Alu 0 147 1 1 1382 515 162 44 71 chr3 104480398 104480511 -55119272 - PB1D9 SINE Alu 0 120 11 1 1382 323 239 197 92 chr3 104480403 104480555 -55119228 - ID_B1 SINE B4 -1 223 56 1 1382 196 30 61 0 chr3 104480615 104480648 -55119135 + (CCCA)n Simple_repeat Simple_repeat 1 35 0 1 1382 232 236 0 18 chr3 104480932 104480988 -55118795 - ID_B1 SINE B4 0 224 170 1 1382 412 119 29 43 chr3 104480938 104481008 -55118775 - B1_Mur4 SINE Alu -6 144 76 1 1382 892 170 0 0 chr3 104481064 104481205 -55118578 - B1_Mur4 SINE Alu -9 141 1 1 1382 22 0 0 0 chr3 104481205 104481227 -55118556 + AT_rich Low_complexity Low_complexity 1 22 0 1 1382 1013 123 0 0 chr3 104481314 104481452 -55118331 + B1_Mur2 SINE Alu 1 138 -11 1 1382 378 0 0 0 chr3 104481452 104481494 -55118289 + (CAAAA)n Simple_repeat Simple_repeat 2 43 0 1 1382 440 118 31 31 chr3 104482087 104482183 -55117600 - L1Md_F2 LINE L1 -2 6580 6485 1 1382 386 292 63 31 chr3 104483149 104483340 -55116443 - MLT1F1 LTR MaLR 0 569 373 1 1382 2321 81 71 6 chr3 104483326 104483663 -55116120 - ORR1B2 LTR MaLR -8 359 1 1 1382 586 216 54 0 chr3 104484326 104484437 -55115346 - B1_Mur1 SINE Alu -25 124 8 1 1382 2529 33 0 252 chr3 104484497 104484985 -55114798 - RLTR10B2 LTR ERVK 0 365 1 1 1382 381 131 0 0 chr3 104485892 104485953 -55113830 + (TG)n Simple_repeat Simple_repeat 1 61 0 1 1382 1151 82 0 13 chr3 104485959 104486108 -55113675 - B1_Mus1 SINE Alu 0 148 2 1 1382 1253 79 15 78 chr3 104486132 104486337 -55113446 - B2_Mm2 SINE B2 0 195 4 1 1382 756 182 0 75 chr3 104486356 104486516 -55113267 - B1_Mur2 SINE Alu -1 148 1 1 1382 273 298 60 0 chr3 104486516 104486600 -55113183 + LTR55 LTR ERV 103 191 -357 1 1382 911 259 131 95 chr3 104486619 104486977 -55112806 - MTEa LTR MaLR -8 371 1 1 1382 569 283 89 46 chr3 104487161 104487398 -55112385 - MLT1F1 LTR MaLR -306 263 17 1 1382 809 210 0 0 chr3 104487514 104487652 -55112131 - B1_Mur1 SINE Alu 0 149 12 1 1382 824 158 208 33 chr3 104488022 104488205 -55111578 - B3 SINE B2 0 216 2 1 1382 4025 152 69 202 chr3 104488210 104488774 -55111009 + RLTR13D5 LTR ERVK 1 409 -624 1 1382 263 28 0 27 chr3 104488774 104488811 -55110972 + (TAAA)n Simple_repeat Simple_repeat 4 39 0 1 1382 4509 87 19 5 chr3 104488811 104489438 -55110345 + RLTR13D5 LTR ERVK 388 1023 0 1 1382 955 134 25 25 chr3 104489731 104489892 -55109891 + B2_Mm2 SINE B2 1 161 -34 1 1382 749 11 0 11 chr3 104489892 104489983 -55109800 + (GAAA)n Simple_repeat Simple_repeat 3 92 0 1 1382 3424 200 63 100 chr3 104489983 104490422 -55109361 - MTC-int LTR MaLR -310 948 508 1 1382 180 0 0 0 chr3 104490422 104490442 -55109341 + (TTA)n Simple_repeat Simple_repeat 3 22 0 1 1382 3424 200 63 100 chr3 104490442 104490985 -55108798 - MTC-int LTR MaLR -751 507 2 1 1382 1869 150 140 11 chr3 104490988 104491346 -55108437 - MTC LTR MaLR -8 413 10 1 1382 309 65 0 0 chr3 104491405 104491428 -55108355 + (T)n Simple_repeat Simple_repeat 1 23 0 1 1382 1346 98 5 30 chr3 104491428 104491627 -55108156 - B2_Mm2 SINE B2 0 195 2 1 1382 309 65 0 0 chr3 104491627 104491649 -55108134 + (T)n Simple_repeat Simple_repeat 1 22 0 1 1382 603 167 29 0 chr3 104491649 104491751 -55108032 - B1_Mur3 SINE Alu 0 149 45 1 1382 842 133 0 23 chr3 104491749 104491880 -55107903 + B1_Mus1 SINE Alu 16 143 -5 1 1382 201 108 0 0 chr3 104491897 104491934 -55107849 + (TG)n Simple_repeat Simple_repeat 2 38 0 1 1382 633 205 0 9 chr3 104491948 104492061 -55107722 - B3A SINE B2 -85 113 2 1 1382 687 243 1 2 chr3 104492066 104492196 -55107587 - ID_B1 SINE B4 -66 226 95 1 1382 3361 174 192 42 chr3 104492196 104492940 -55106843 + RMER13A LTR ERVK 1 856 -4 1 1382 291 267 51 135 chr3 104492940 104492965 -55106818 - B4A SINE B4 -194 98 84 1 1382 996 214 40 0 chr3 104493358 104493559 -55106224 + B3 SINE B2 3 211 -5 1 1382 994 173 5 56 chr3 104493762 104493976 -55105807 + B3 SINE B2 1 203 -13 1 1382 1131 94 0 0 chr3 104493986 104494166 -55105617 + (CA)n Simple_repeat Simple_repeat 1 180 0 1 1382 1305 83 0 0 chr3 104495277 104495457 -55104326 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 1 1382 489 149 11 65 chr3 104495481 104495574 -55104209 - B2_Mm2 SINE B2 -88 107 20 1 1382 546 176 9 27 chr3 104495589 104495700 -55104083 - PB1D9 SINE Alu -1 119 11 1 1382 207 0 0 0 chr3 104497081 104497104 -55102679 + (TTTG)n Simple_repeat Simple_repeat 3 25 0 1 1382 359 144 59 178 chr3 104497403 104497443 -55102340 + Tigger7 DNA MER2_type 2213 2246 -245 1 1382 716 258 60 15 chr3 104497443 104497644 -55102139 + B3 SINE B2 1 210 -6 1 1382 359 144 59 178 chr3 104497644 104497721 -55102062 + Tigger7 DNA MER2_type 2247 2316 -175 1 1382 217 250 16 16 chr3 104497849 104497910 -55101873 - B4A SINE B4 -210 82 22 1 1382 337 188 50 40 chr3 104497918 104498018 -55101765 + Tigger7 DNA MER2_type 2295 2395 -96 1 1382 3375 31 13 0 chr3 104498235 104498626 -55101157 - MTA_Mm LTR MaLR 0 396 1 1 1382 9710 15 3 3 chr3 104498626 104499724 -55100059 - MTA_Mm-int LTR MaLR 0 1098 1 1 1382 2214 40 18 0 chr3 104499724 104500000 -55099783 - MTA_Mm LTR MaLR 0 396 116 1 1382 1014 9 0 0 chr3 104500000 104500115 -55099668 - MTA_Mm LTR MaLR -281 115 1 1 1382 237 287 107 98 chr3 104500132 104500244 -55099539 - LTR33B LTR ERVL -3 500 388 2 1382 293 152 59 27 chr3 104500385 104500459 -55099324 + PB1D10 SINE Alu 1 90 -59 3 1382 34 0 0 0 chr3 104500647 104500681 -55099102 + AT_rich Low_complexity Low_complexity 1 34 0 4 1382 547 243 0 18 chr3 104500697 104500806 -55098977 - PB1D10 SINE Alu -1 116 10 5 1382 245 336 64 46 chr3 104500728 104500837 -55098946 - B4 SINE B4 -113 179 69 6 1382 373 206 52 50 chr3 104500822 104500932 -55098851 - PB1D10 SINE Alu -2 147 24 7 1382 410 224 165 45 chr3 104500979 104501246 -55098537 - L1MDa LINE L1 -4787 1846 1548 8 1382 423 0 0 0 chr3 104501246 104501293 -55098490 + (TTTC)n Simple_repeat Simple_repeat 1 47 0 9 1382 1167 62 0 7 chr3 104501293 104501440 -55098343 - B1_Mm SINE Alu 0 147 2 1 1382 375 141 0 0 chr3 104501549 104501613 -55098170 + (TG)n Simple_repeat Simple_repeat 2 65 0 1 1382 290 266 59 42 chr3 104502718 104502836 -55096947 + RLTR42-int LTR ERVK 1158 1277 -4245 1 1382 321 141 0 72 chr3 104502876 104502945 -55096838 - B2_Mm2 SINE B2 -131 64 1 1 1382 285 29 0 0 chr3 104503128 104503162 -55096621 + (TCTG)n Simple_repeat Simple_repeat 3 36 0 1 1382 22 35 0 0 chr3 104503228 104503257 -55096526 + AT_rich Low_complexity Low_complexity 1 29 0 1 1382 213 39 0 0 chr3 104504109 104504135 -55095648 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 1 1382 727 154 8 16 chr3 104504244 104504369 -55095414 + B1_Mus2 SINE Alu 24 147 0 1 1382 436 209 72 106 chr3 104504382 104504763 -55095020 - L1M3 LINE L1 -500 5671 5340 1 1382 367 193 204 0 chr3 104504793 104504881 -55094902 + U6 snRNA snRNA 1 106 -1 1 1382 261 83 0 0 chr3 104505214 104505250 -55094533 + (TGGGGG)n Simple_repeat Simple_repeat 1 36 0 2 1382 570 226 87 16 chr3 104505480 104505606 -55094177 - B1_Mur2 SINE Alu -8 141 7 2 1382 268 101 49 25 chr3 104505680 104505761 -55094022 + T-rich Low_complexity Low_complexity 2 84 0 2 1382 862 134 56 0 chr3 104505764 104505906 -55093877 - B1_Mur4 SINE Alu 0 150 1 2 1382 573 248 14 49 chr3 104506120 104506264 -55093519 + B1_Mur1 SINE Alu 10 148 -1 2 1382 468 221 68 1 chr3 104506316 104506430 -55093353 + B1_Mur1 SINE Alu 1 120 0 2 1382 745 235 61 12 chr3 104506439 104506568 -55093215 + B3 SINE B2 44 171 -45 2 1382 308 24 24 0 chr3 104506568 104506609 -55093174 + (CA)n Simple_repeat Simple_repeat 2 43 0 2 1382 745 235 61 12 chr3 104506609 104506643 -55093140 + B3 SINE B2 172 214 -2 2 1382 21 36 0 0 chr3 104506644 104506672 -55093111 + AT_rich Low_complexity Low_complexity 1 28 0 2 1382 243 312 0 0 chr3 104506672 104506736 -55093047 + B4A SINE B4 86 149 -143 2 1382 387 248 0 14 chr3 104506682 104506779 -55093004 + PB1D7 SINE Alu 11 105 -15 3 1382 2071 182 67 3 chr3 104507289 104507675 -55092108 + MTC LTR MaLR 3 413 -8 3 1382 240 59 0 0 chr3 104507810 104507844 -55091939 + (CAAA)n Simple_repeat Simple_repeat 4 37 0 3 1382 185 256 10 126 chr3 104507896 104507999 -55091784 - L2a LINE L2 -11 3415 3325 3 1382 1016 92 0 7 chr3 104508209 104508352 -55091431 - B2_Mm2 SINE B2 -1 194 53 3 1382 909 112 35 14 chr3 104508427 104508572 -55091211 - B1_Mur2 SINE Alu 0 149 2 3 1382 233 184 0 0 chr3 104508588 104508626 -55091157 + RLTR13D3 LTR ERVK 1 38 -1076 3 1382 22 70 0 0 chr3 104509005 104509048 -55090735 + AT_rich Low_complexity Low_complexity 1 43 0 3 1382 189 0 0 0 chr3 104509330 104509351 -55090432 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 3 1382 398 206 112 67 chr3 104509359 104509508 -55090275 + RLTR13D3 LTR ERVK 983 1114 0 3 1382 871 134 15 7 chr3 104509513 104509648 -55090135 - B1_Mus1 SINE Alu -1 147 12 3 1382 366 23 0 0 chr3 104509663 104509706 -55090077 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 4 1382 228 186 0 85 chr3 104509706 104509753 -55090030 - B1_Mur4 SINE Alu -10 140 98 4 1382 366 115 0 49 chr3 104509754 104509798 -55089985 + T-rich Low_complexity Low_complexity 39 80 0 4 1382 1189 75 0 0 chr3 104509798 104509945 -55089838 - B1_Mm SINE Alu 0 147 1 4 1382 366 115 0 49 chr3 104509945 104509982 -55089801 + T-rich Low_complexity Low_complexity 3 38 0 4 1382 1354 79 20 40 chr3 104510117 104510302 -55089481 + B2_Mm2 SINE B2 1 182 -13 4 1382 513 47 0 0 chr3 104510302 104510366 -55089417 + (GGAA)n Simple_repeat Simple_repeat 1 64 0 4 1382 1354 79 20 40 chr3 104510366 104510379 -55089404 + B2_Mm2 SINE B2 183 195 0 4 1382 211 293 121 0 chr3 104511245 104511303 -55088480 + MIRc SINE MIR 36 100 -168 4 1382 256 108 0 0 chr3 104512202 104512239 -55087544 - B3A SINE B2 -160 38 2 4 1382 551 179 11 0 chr3 104512267 104512362 -55087421 - B1_Mus2 SINE Alu 0 147 52 4 1382 258 232 69 42 chr3 104512309 104512381 -55087402 - RLTR25B LTR ERVK -519 509 436 5 1382 551 180 25 120 chr3 104512639 104512797 -55086986 + B1_Mur1 SINE Alu 2 144 -5 5 1382 496 246 32 8 chr3 104513202 104513296 -55086487 - ID_B1 SINE B4 -98 126 30 5 1382 2713 100 124 32 chr3 104513296 104513771 -55086012 - MURVY-LTR LTR ERV1 0 519 1 5 1382 496 246 32 8 chr3 104513771 104513799 -55085984 - ID SINE ID -195 29 2 5 1382 850 164 14 7 chr3 104513834 104513975 -55085808 - B1_Mus1 SINE Alu -6 142 1 5 1382 421 259 103 0 chr3 104514032 104514148 -55085635 + B1F1 SINE Alu 14 141 -8 5 1382 583 220 59 0 chr3 104514421 104514539 -55085244 - RSINE1 SINE B4 -38 127 3 5 1382 377 254 24 24 chr3 104514801 104514955 -55084828 - L1M5 LINE L1 -546 5627 5475 5 1382 1416 44 0 0 chr3 104515211 104515391 -55084392 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 5 1382 283 143 0 45 chr3 104515391 104515457 -55084326 + CT-rich Low_complexity Low_complexity 2 64 0 5 1382 229 372 26 0 chr3 104515477 104515555 -55084228 - RSINE1 SINE B4 0 165 86 6 1382 626 293 0 26 chr3 104515556 104515710 -55084073 - B3A SINE B2 -47 151 2 6 1382 2615 136 39 2 chr3 104515710 104516116 -55083667 + MTC LTR MaLR 1 421 0 6 1382 847 258 10 69 chr3 104516491 104516695 -55083088 + B3A SINE B2 2 193 -5 6 1382 1079 226 5 0 chr3 104517007 104517215 -55082568 - B3 SINE B2 -7 209 1 6 1382 395 270 54 84 chr3 104517218 104517384 -55082399 + MTE2a LTR MaLR 205 365 -14 6 1382 1228 229 44 11 chr3 104517600 104517874 -55081909 + B4 SINE B4 8 290 -2 6 1382 226 329 0 0 chr3 104517876 104517946 -55081837 + (CA)n Simple_repeat Simple_repeat 1 70 0 6 1382 269 294 58 12 chr3 104518827 104518913 -55080870 + MIR SINE MIR 35 124 -84 6 1382 516 311 54 81 chr3 104519263 104519634 -55080149 + MLT1A1 LTR MaLR 36 396 -12 6 1382 507 291 51 78 chr3 104520897 104521181 -55078602 - B4A SINE B4 0 292 14 7 1382 1376 102 16 0 chr3 104521204 104521391 -55078392 - B2_Mm2 SINE B2 -4 191 2 7 1382 391 238 117 19 chr3 104521514 104521617 -55078166 + ID_B1 SINE B4 94 206 -18 7 1382 1054 129 0 0 chr3 104521628 104521775 -55078008 - B1_Mus1 SINE Alu 0 148 2 7 1382 393 141 0 34 chr3 104521964 104522052 -55077731 + CT-rich Low_complexity Low_complexity 5 89 0 7 1382 2481 141 10 49 chr3 104522088 104522498 -55077285 - ORR1B1 LTR MaLR 0 394 1 7 1382 262 291 16 41 chr3 104523085 104523207 -55076576 - L2 LINE L2 -802 2617 2499 7 1382 1679 31 0 0 chr3 104523208 104523400 -55076383 + B2_Mm1a SINE B2 2 193 0 7 1382 481 239 18 0 chr3 104523413 104523526 -55076257 + PB1D9 SINE Alu 1 115 -5 7 1382 976 191 80 0 chr3 104523526 104523725 -55076058 + B3 SINE B2 2 216 0 7 1382 314 296 87 0 chr3 104524096 104524211 -55075572 - LTR50 LTR ERVL -633 162 38 8 1382 440 212 12 0 chr3 104525749 104525834 -55073949 - RSINE1 SINE B4 -27 138 53 8 1382 645 219 31 0 chr3 104526280 104526408 -55073375 + RSINE1 SINE B4 11 142 -23 8 1382 1428 74 32 0 chr3 104526503 104526692 -55073091 + B2_Mm2 SINE B2 1 195 0 8 1382 336 265 27 117 chr3 104526856 104526967 -55072816 + RSINE1 SINE B4 11 111 -54 8 1382 790 211 128 10 chr3 104527144 104527340 -55072443 + ID_B1 SINE B4 1 219 -5 8 1382 234 279 84 48 chr3 104527346 104527429 -55072354 - MER2 DNA MER2_type -1 344 259 8 1382 1682 125 181 84 chr3 104527471 104527830 -55071953 - ORR1B1 LTR MaLR 0 394 1 8 1382 1179 197 24 0 chr3 104527976 104528184 -55071599 - B3 SINE B2 -2 214 2 8 1382 595 169 85 0 chr3 104528487 104528605 -55071178 + URR1B DNA MER1_type 98 225 0 8 1382 332 278 110 26 chr3 104528605 104528642 -55071141 - CYRA11_Mm Unknown Y-chromosome -318 299 132 9 1382 332 302 52 39 chr3 104528700 104528855 -55070928 + RMER15 LTR ERVL 414 570 -5 9 1382 1360 213 132 21 chr3 104528900 104529226 -55070557 + ORR1D2 LTR MaLR 9 370 0 9 1382 1993 128 6 67 chr3 104529292 104529635 -55070148 - ORR1A4 LTR MaLR 0 329 8 9 1382 261 0 0 0 chr3 104529635 104529664 -55070119 + (CA)n Simple_repeat Simple_repeat 1 29 0 9 1382 822 253 70 56 chr3 104529664 104529949 -55069834 - B4A SINE B4 -2 290 2 9 1382 965 238 19 0 chr3 104530009 104530215 -55069568 + B3 SINE B2 1 210 -6 9 1382 1097 214 10 10 chr3 104530355 104530563 -55069220 - B3 SINE B2 -6 210 3 9 1382 414 0 0 0 chr3 104530602 104530648 -55069135 + (TG)n Simple_repeat Simple_repeat 2 47 0 9 1382 241 314 66 1 chr3 104530853 104530944 -55068839 - L2a LINE L2 -37 3389 3272 9 1382 394 311 87 70 chr3 104531083 104531325 -55068458 - RMER15 LTR ERVL -11 564 319 1 1382 369 0 0 0 chr3 104531586 104531627 -55068156 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 1382 306 0 0 0 chr3 104531631 104531665 -55068118 + (GA)n Simple_repeat Simple_repeat 1 34 0 1 1382 639 312 78 12 chr3 104531733 104531976 -55067807 - MER45B DNA Tip100 -150 890 632 1 1382 451 240 142 16 chr3 104531999 104532126 -55067657 - B1F SINE Alu -6 143 1 1 1382 359 306 138 23 chr3 104532190 104532364 -55067419 - MER45B DNA Tip100 -499 541 348 1 1382 893 263 87 19 chr3 104532483 104532747 -55067036 + RMER5 LTR ERV1 33 314 -220 1 1382 1871 90 20 45 chr3 104532722 104533014 -55066769 + ORR1A4 LTR MaLR 45 329 0 1 1382 969 208 135 16 chr3 104532960 104533204 -55066579 - MTD LTR MaLR 0 419 147 1 1382 279 246 14 0 chr3 104533197 104533266 -55066517 - RLTR14 LTR ERV1 -312 70 1 1 1382 278 298 60 17 chr3 104533507 104533623 -55066160 + RMER5 LTR ERV1 1 121 -413 1 1382 605 175 19 10 chr3 104533711 104533815 -55065968 + PB1D9 SINE Alu 3 107 -13 1 1382 1512 208 77 17 chr3 104533831 104533989 -55065794 + ORR1C2 LTR MaLR 12 171 -213 1 1382 414 0 0 0 chr3 104533989 104534035 -55065748 + (TC)n Simple_repeat Simple_repeat 2 47 0 1 1382 1512 208 77 17 chr3 104534035 104534228 -55065555 + ORR1C2 LTR MaLR 172 383 -1 1 1382 282 292 14 0 chr3 104534379 104534451 -55065332 + ID4_ SINE ID 5 77 -6 1 1382 271 323 0 0 chr3 104534467 104534532 -55065251 + MER57E1 LTR ERV1 22 86 -316 1 1382 591 229 80 29 chr3 104534598 104534766 -55065017 + MER57E1 LTR ERV1 187 365 -7 1 1382 243 0 0 0 chr3 104534766 104534793 -55064990 + (TTA)n Simple_repeat Simple_repeat 1 27 0 1 1382 727 246 15 0 chr3 104534794 104534928 -55064855 - ID_B1 SINE B4 -9 215 80 1 1382 303 264 41 71 chr3 104534959 104534972 -55064811 - ID_B1 SINE B4 -42 182 88 1 1382 362 238 47 12 chr3 104534972 104535057 -55064726 - PB1D10 SINE Alu -23 94 7 1 1382 804 163 7 7 chr3 104535152 104535288 -55064495 + B1_Mur4 SINE Alu 2 137 -13 1 1382 612 0 0 0 chr3 104535289 104535357 -55064426 + (GA)n Simple_repeat Simple_repeat 1 68 0 1 1382 979 213 233 80 chr3 104536226 104536555 -55063228 - ORR1E LTR MaLR 0 379 1 1 1382 355 256 35 11 chr3 104536555 104536642 -55063141 + ORR1E LTR MaLR 266 354 -5 1 1382 1442 55 16 5 chr3 104536677 104536861 -55062922 - B2_Mm2 SINE B2 -8 187 2 1 1382 239 98 0 105 chr3 104536872 104536929 -55062854 + T-rich Low_complexity Low_complexity 1 51 0 1 1382 1052 90 163 0 chr3 104536930 104537096 -55062687 - B2_Mm2 SINE B2 -1 194 2 1 1382 560 170 191 43 chr3 104537226 104537367 -55062416 + MTEb LTR MaLR 98 259 -120 1 1382 231 146 0 0 chr3 104538021 104538076 -55061707 + (T)n Simple_repeat Simple_repeat 1 55 0 1 1382 1158 96 16 48 chr3 104538571 104538758 -55061025 + URR1A DNA MER1_type 46 226 0 1 1382 321 316 10 39 chr3 104539133 104539235 -55060548 + B4 SINE B4 1 99 -193 1 1382 377 197 0 90 chr3 104539243 104539321 -55060462 + B4 SINE B4 220 290 -2 1 1382 268 266 102 66 chr3 104539388 104539493 -55060290 + LTR16C LTR ERVL 348 458 -31 1 1382 428 0 19 0 chr3 104539493 104539545 -55060238 + (TC)n Simple_repeat Simple_repeat 2 54 0 1 1382 268 266 102 66 chr3 104539545 104539576 -55060207 + LTR16C LTR ERVL 459 489 0 1 1382 302 309 0 0 chr3 104539650 104539718 -55060065 + MTD LTR MaLR 75 142 -277 1 1382 200 214 0 18 chr3 104540239 104540296 -55059487 + CT-rich Low_complexity Low_complexity 1 56 0 1 1382 271 286 43 0 chr3 104540299 104540369 -55059414 - ID4 SINE ID -9 74 2 1 1382 719 236 14 14 chr3 104540415 104540557 -55059226 - RSINE1 SINE B4 -12 153 12 1 1382 609 208 75 0 chr3 104540612 104540732 -55059051 - B3 SINE B2 -86 130 2 1 1382 638 197 193 73 chr3 104540756 104540948 -55058835 - B3 SINE B2 0 216 2 1 1382 279 108 0 0 chr3 104540961 104540998 -55058785 - B1_Mus2 SINE Alu -109 38 2 1 1382 276 159 123 55 chr3 104540998 104541028 -55058755 - MT2B LTR ERVL -297 293 227 1 1382 1235 186 43 83 chr3 104541057 104541436 -55058347 - RMER16 LTR ERVK 0 533 1 1 1382 1475 214 114 15 chr3 104541539 104541880 -55057903 + MTD LTR MaLR 43 417 -2 1 1382 223 174 0 0 chr3 104541882 104541928 -55057855 - PB1D10 SINE Alu -71 46 1 1 1382 257 254 85 85 chr3 104542111 104542240 -55057543 - MIR SINE MIR -61 147 19 1 1382 180 0 0 0 chr3 104542252 104542272 -55057511 + (TCTG)n Simple_repeat Simple_repeat 3 22 0 1 1382 709 229 57 183 chr3 104542274 104542300 -55057483 - B3 SINE B2 -14 202 178 1 1382 3535 23 2 0 chr3 104542300 104542695 -55057088 - MTA_Mm LTR MaLR 0 396 1 1 1382 9142 40 4 1 chr3 104542695 104543790 -55055993 - MTA_Mm-int LTR MaLR 0 1098 1 1 1382 3562 18 2 0 chr3 104543790 104544185 -55055598 - MTA_Mm LTR MaLR 0 396 1 1 1382 709 229 57 183 chr3 104544185 104544345 -55055438 - B3 SINE B2 -39 177 41 1 1382 789 113 112 8 chr3 104544345 104544357 -55055426 - B1_Mur3 SINE Alu 0 149 138 1 1382 903 59 0 0 chr3 104544357 104544475 -55055308 + (TTCC)n Simple_repeat Simple_repeat 4 121 0 1 1382 789 113 112 8 chr3 104544475 104544596 -55055187 - B1_Mur3 SINE Alu -12 137 2 1 1382 709 229 57 183 chr3 104544596 104544636 -55055147 - B3 SINE B2 -176 40 4 1 1382 456 19 0 0 chr3 104544652 104544705 -55055078 + (TAGA)n Simple_repeat Simple_repeat 2 54 0 1 1382 486 268 70 8 chr3 104544719 104544847 -55054936 - RSINE1 SINE B4 -28 137 2 1 1382 2343 109 6 0 chr3 104545041 104545363 -55054420 + ORR1A2 LTR MaLR 4 327 0 1 1382 423 224 0 23 chr3 104545363 104545450 -55054333 + MTEa LTR MaLR 2 86 -293 1 1382 1248 54 0 0 chr3 104545473 104545620 -55054163 - B1_Mm SINE Alu 0 147 1 1 1382 831 101 128 7 chr3 104545624 104545773 -55054010 - B2_Mm1t SINE B2 -1 192 26 1 1382 1017 227 172 30 chr3 104545758 104546026 -55053757 + MTEa LTR MaLR 74 379 0 1 1382 266 347 91 10 chr3 104546885 104546984 -55052799 - MIRb SINE MIR -65 203 97 1 1382 1373 53 0 6 chr3 104547204 104547376 -55052407 + B2_Mm2 SINE B2 1 171 -24 1 1382 416 183 11 0 chr3 104547378 104547471 -55052312 + GA-rich Low_complexity Low_complexity 1 94 0 1 1382 688 228 38 6 chr3 104548197 104548356 -55051427 - RSINE1 SINE B4 0 165 2 1 1382 379 323 11 0 chr3 104548356 104548449 -55051334 - B4A SINE B4 -197 95 2 1 1382 3259 60 2 0 chr3 104548494 104548893 -55050890 + MTB LTR MaLR 1 400 0 1 1382 261 0 0 0 chr3 104548944 104548973 -55050810 + (TAA)n Simple_repeat Simple_repeat 2 30 0 1 1382 561 330 43 69 chr3 104549431 104549779 -55050004 + ORR1E LTR MaLR 21 359 0 1 1382 523 238 61 8 chr3 104549781 104549912 -55049871 + ORR1E-int LTR MaLR 1 138 -1442 1 1382 650 276 105 54 chr3 104549925 104550201 -55049582 + ORR1E-int LTR MaLR 383 672 -908 1 1382 470 315 26 73 chr3 104550208 104550400 -55049383 + B3A SINE B2 7 189 -9 1 1382 901 183 51 17 chr3 104550403 104550581 -55049202 + B3 SINE B2 1 184 -32 1 1382 200 86 0 28 chr3 104550581 104550617 -55049166 + (CAAT)n Simple_repeat Simple_repeat 1 35 0 1 1382 355 312 59 16 chr3 104551350 104551500 -55048283 + MIRc SINE MIR 4 164 -112 1 1382 4316 120 41 42 chr3 104551546 104552303 -55047480 - RMER6A LTR ERVK 0 756 1 1 1382 667 197 15 23 chr3 104552348 104552478 -55047305 + B1F2 SINE Alu 21 149 0 1 1382 783 156 225 35 chr3 104552504 104552677 -55047106 + B3 SINE B2 1 206 -10 1 1382 936 240 50 5 chr3 104552883 104553084 -55046699 + B3 SINE B2 1 210 -6 1 1382 596 291 66 0 chr3 104553139 104553335 -55046448 + B3 SINE B2 8 216 0 1 1382 1072 224 9 5 chr3 104553351 104553566 -55046217 + B3 SINE B2 1 216 0 1 1382 1455 88 5 0 chr3 104553571 104553765 -55046018 + B2_Mm2 SINE B2 1 195 0 1 1382 27 0 0 0 chr3 104553778 104553805 -55045978 + AT_rich Low_complexity Low_complexity 1 27 0 1 1382 564 217 41 8 chr3 104554053 104554174 -55045609 + RSINE1 SINE B4 3 127 -38 1 1382 1046 153 179 0 chr3 104554267 104554457 -55045326 + URR1B DNA MER1_type 2 225 0 1 1382 688 227 0 14 chr3 104554698 104554841 -55044942 + B1_Mur2 SINE Alu 1 141 -8 1 1382 201 121 0 0 chr3 104556004 104556037 -55043746 + (G)n Simple_repeat Simple_repeat 1 33 0 1 1382 392 283 121 0 chr3 104556225 104556324 -55043459 - B1F SINE Alu -5 115 5 1 1382 315 271 0 0 chr3 104556839 104556909 -55042874 + B1_Mus2 SINE Alu 77 146 -1 1 1382 983 108 65 0 chr3 104556945 104557084 -55042699 + B1_Mus1 SINE Alu 1 148 0 1 1382 572 125 0 10 chr3 104557084 104557181 -55042602 + (GAAA)n Simple_repeat Simple_repeat 3 98 0 1 1382 272 286 14 0 chr3 104558418 104558488 -55041295 + LTR52 LTR ERVL 7 77 -344 1 1382 294 29 0 0 chr3 104558797 104558832 -55040951 + (TG)n Simple_repeat Simple_repeat 2 36 0 1 1382 1937 170 82 47 chr3 104559080 104559505 -55040278 + RMER10A LTR ERVL 1 440 -2 1 1382 554 195 22 79 chr3 104559561 104559700 -55040083 - RSINE1 SINE B4 -33 132 2 1 1382 947 223 19 14 chr3 104559860 104560074 -55039709 + B3 SINE B2 2 216 0 1 1382 1325 136 16 0 chr3 104560092 104560283 -55039500 + B2_Mm2 SINE B2 2 195 0 1 1382 698 148 16 0 chr3 104560283 104560411 -55039372 + GA-rich Low_complexity Low_complexity 4 133 0 1 1382 520 284 104 40 chr3 104560412 104560599 -55039184 + B3 SINE B2 2 201 -15 1 1382 243 0 0 0 chr3 104560599 104560626 -55039157 + (CA)n Simple_repeat Simple_repeat 1 27 0 1 1382 520 284 104 40 chr3 104560626 104560640 -55039143 + B3 SINE B2 202 216 0 1 1382 376 294 37 0 chr3 104560650 104560786 -55038997 + L1M5 LINE L1 3527 3667 -2479 1 1382 428 267 0 38 chr3 104560795 104560900 -55038883 + MTE2a LTR MaLR 10 110 -269 1 1382 846 278 36 23 chr3 104560961 104561182 -55038601 - ID_B1 SINE B4 0 224 1 1 1382 691 291 49 26 chr3 104561914 104562140 -55037643 - Lx6 LINE L1 -30 7430 7200 1 1382 1430 253 66 23 chr3 104562141 104562760 -55037023 + Lx6 LINE L1 6455 6894 -566 1 1382 224 30 30 0 chr3 104562795 104562828 -55036955 + (TC)n Simple_repeat Simple_repeat 2 35 0 1 1382 656 276 67 31 chr3 104563093 104563173 -55036610 + B4A SINE B4 3 82 -210 1 1382 330 26 0 0 chr3 104563173 104563212 -55036571 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 2 1382 656 276 67 31 chr3 104563212 104563355 -55036428 + B4A SINE B4 83 233 -59 1 1382 989 108 65 12 chr3 104563373 104563512 -55036271 + B2_Mm1t SINE B2 2 147 -46 2 1382 428 0 19 0 chr3 104563512 104563564 -55036219 + (TATG)n Simple_repeat Simple_repeat 2 54 0 2 1382 1230 68 0 0 chr3 104563564 104563712 -55036071 - B1_Mus1 SINE Alu 0 148 1 2 1382 989 108 65 12 chr3 104563712 104563740 -55036043 + B2_Mm1t SINE B2 148 176 -17 2 1382 350 118 66 2 chr3 104563787 104563893 -55035890 + B2_Mm2 SINE B2 47 195 0 2 1382 381 226 0 31 chr3 104564810 104564938 -55034845 + CT-rich Low_complexity Low_complexity 1 124 0 2 1382 211 340 78 0 chr3 104565108 104565211 -55034572 + MIRb SINE MIR 102 212 -56 2 1382 284 0 28 0 chr3 104565700 104565736 -55034047 + (CA)n Simple_repeat Simple_repeat 2 38 0 2 1382 279 0 0 0 chr3 104565736 104565766 -55034017 + (GA)n Simple_repeat Simple_repeat 2 32 0 2 1382 964 255 41 51 chr3 104565817 104566110 -55033673 + B4A SINE B4 1 290 -2 2 1382 350 339 60 49 chr3 104566159 104566342 -55033441 - ERVL-E-int LTR ERVL -1911 3756 3572 2 1382 22 56 0 0 chr3 104566345 104566381 -55033402 + AT_rich Low_complexity Low_complexity 1 36 0 2 1382 273 157 39 0 chr3 104566391 104566442 -55033341 + B1_Mus1 SINE Alu 3 55 -93 2 1382 576 165 0 37 chr3 104566531 104566638 -55033145 + B1_Mur3 SINE Alu 42 144 -5 2 1382 270 296 0 58 chr3 104566775 104566792 -55032991 - RSINE1 SINE B4 -83 82 2 2 1382 530 72 0 0 chr3 104566792 104566861 -55032922 - B2_Mm2 SINE B2 -126 69 1 2 1382 206 250 27 14 chr3 104567445 104567518 -55032265 + G-rich Low_complexity Low_complexity 1 74 0 2 1382 192 40 0 0 chr3 104567518 104567543 -55032240 + (TG)n Simple_repeat Simple_repeat 1 25 0 2 1382 271 279 44 0 chr3 104567543 104567611 -55032172 - ERVL-E-int LTR ERVL -3116 2551 2481 2 1382 564 241 26 40 chr3 104567622 104567773 -55032010 + B1F SINE Alu 1 149 0 2 1382 226 254 0 33 chr3 104567830 104567891 -55031892 - MLT1A0 LTR MaLR -81 284 226 2 1382 834 201 59 40 chr3 104568047 104568249 -55031534 - B3 SINE B2 -2 214 9 2 1382 307 155 0 79 chr3 104568420 104568483 -55031300 + B1F SINE Alu 46 103 -46 2 1382 1531 52 0 49 chr3 104568486 104568689 -55031094 - B2_Mm1t SINE B2 0 193 1 2 1382 231 36 0 0 chr3 104568701 104568729 -55031054 + (TAAA)n Simple_repeat Simple_repeat 1 28 0 2 1382 768 122 8 31 chr3 104568731 104568858 -55030925 + B1_Mur3 SINE Alu 25 148 -1 2 1382 404 170 16 138 chr3 104568896 104569019 -55030764 + MT2B LTR ERVL 157 264 -337 2 1382 887 127 0 14 chr3 104568911 104569055 -55030728 + B1_Mus1 SINE Alu 6 147 -1 2 1382 1601 27 11 11 chr3 104569679 104569867 -55029916 + B2_Mm1a SINE B2 2 189 -4 2 1382 180 0 0 0 chr3 104569987 104570007 -55029776 + (TTG)n Simple_repeat Simple_repeat 2 21 0 2 1382 477 0 0 0 chr3 104570059 104570112 -55029671 + (CAAAA)n Simple_repeat Simple_repeat 3 55 0 2 1382 363 280 92 0 chr3 104570231 104570389 -55029394 - MER58A DNA MER1_type -45 179 1 2 1382 338 223 76 19 chr3 104570476 104570581 -55029202 - PB1D10 SINE Alu -6 111 1 2 1382 329 268 130 0 chr3 104570874 104571027 -55028756 + MIR3 SINE MIR 17 193 -15 2 1382 189 0 0 0 chr3 104572707 104572728 -55027055 + (TG)n Simple_repeat Simple_repeat 2 22 0 2 1382 189 0 0 0 chr3 104572738 104572759 -55027024 + (TTTG)n Simple_repeat Simple_repeat 1 21 0 2 1382 275 278 24 87 chr3 104572877 104573003 -55026780 + MIRc SINE MIR 45 162 -106 2 1382 1029 218 34 5 chr3 104574056 104574263 -55025520 - B3 SINE B2 -3 213 1 2 1382 219 235 15 0 chr3 104574761 104574816 -55024967 + T-rich Low_complexity Low_complexity 15 70 0 2 1382 350 238 157 10 chr3 104574816 104574918 -55024865 - PB1D10 SINE Alu 0 117 1 2 1382 219 235 15 0 chr3 104574918 104574930 -55024853 + T-rich Low_complexity Low_complexity 3 14 0 2 1382 205 400 0 0 chr3 104576912 104576992 -55022791 - L2c LINE L2 -23 3364 3285 2 1382 1234 41 7 0 chr3 104577538 104577684 -55022099 + B1_Mm SINE Alu 1 147 0 2 1382 251 304 26 135 chr3 104577849 104577962 -55021821 + B4 SINE B4 110 213 -79 2 1382 342 0 0 0 chr3 104577962 104578000 -55021783 + (CAAA)n Simple_repeat Simple_repeat 1 38 0 2 1382 251 304 26 135 chr3 104578000 104578042 -55021741 + B4 SINE B4 214 248 -44 2 1382 495 87 0 0 chr3 104578253 104578322 -55021461 + (TGAA)n Simple_repeat Simple_repeat 2 70 0 2 1382 1494 33 0 0 chr3 104578337 104578517 -55021266 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 2 1382 221 109 0 21 chr3 104580841 104580888 -55018895 + (CAAA)n Simple_repeat Simple_repeat 2 47 0 2 1382 288 0 0 0 chr3 104581089 104581121 -55018662 + (TG)n Simple_repeat Simple_repeat 2 33 0 2 1382 207 0 0 0 chr3 104581248 104581271 -55018512 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2 1382 326 92 401 20 chr3 104581315 104581425 -55018358 + B2_Mm2 SINE B2 44 188 -7 2 1382 292 259 161 0 chr3 104581820 104581901 -55017882 - RSINE1 SINE B4 -70 95 2 2 1382 554 261 37 0 chr3 104581901 104582033 -55017750 - B1F1 SINE Alu -9 140 4 2 1382 214 330 113 0 chr3 104583267 104583373 -55016410 + MIRb SINE MIR 134 251 -17 2 1382 209 224 132 18 chr3 104587297 104587385 -55012398 + MIRb SINE MIR 28 120 -142 2 1382 192 341 167 6 chr3 104589093 104589261 -55010522 + L2 LINE L2 2321 2515 -904 2 1382 806 207 87 39 chr3 104589930 104590136 -55009647 - B3 SINE B2 0 216 1 2 1382 184 241 86 0 chr3 104590180 104590238 -55009545 + MIRb SINE MIR 112 174 -94 2 1382 797 190 0 64 chr3 104590360 104590517 -55009266 - B1_Mur4 SINE Alu -3 147 1 2 1382 370 274 88 0 chr3 104590709 104590811 -55008972 - PB1D7 SINE Alu -9 111 1 2 1382 277 224 15 59 chr3 104590973 104591058 -55008725 - B1_Mur4 SINE Alu -29 120 35 2 1382 279 0 0 0 chr3 104593413 104593444 -55006339 + (TG)n Simple_repeat Simple_repeat 2 32 0 2 1382 306 254 157 9 chr3 104594422 104594537 -55005246 + B4 SINE B4 1 133 -32 2 1382 339 368 19 25 chr3 104595107 104595266 -55004517 + MIR SINE MIR 33 190 -72 2 1383 1127 119 122 15 chr3 104596349 104596545 -55003238 + URR1A DNA MER1_type 8 224 -2 2 1383 429 164 0 21 chr3 104597782 104597875 -55001908 + ID4 SINE ID 13 98 -54 2 1383 256 175 0 34 chr3 104599230 104599289 -55000494 + MER5B DNA MER1_type 1 57 -121 2 1383 362 266 65 65 chr3 104600667 104600820 -54998963 - RSINE1 SINE B4 -2 163 11 2 1383 513 230 8 42 chr3 104600825 104600943 -54998840 - PB1D10 SINE Alu -3 114 1 2 1383 306 236 203 45 chr3 104600965 104601098 -54998685 - B3A SINE B2 -3 195 42 2 1383 436 273 45 0 chr3 104601198 104601308 -54998475 + PB1 SINE Alu 11 125 -2 2 1383 1620 2 0 0 chr3 104601481 104601955 -54997828 + (TTTC)n Simple_repeat Simple_repeat 1 474 0 2 1383 1172 50 0 7 chr3 104601957 104602098 -54997685 - B1_Mm SINE Alu -6 141 2 2 1383 325 247 0 0 chr3 104603052 104603125 -54996658 - MIR SINE MIR -59 149 77 2 1383 764 264 13 0 chr3 104604805 104604960 -54994823 + RSINE1 SINE B4 3 159 -6 2 1383 1351 57 85 0 chr3 104606093 104606251 -54993532 + B2_Mm1t SINE B2 2 160 -33 2 1383 207 0 0 0 chr3 104606251 104606274 -54993509 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 2 1383 1351 57 85 0 chr3 104606274 104606292 -54993491 + B2_Mm1t SINE B2 161 191 -2 2 1383 581 256 80 23 chr3 104606507 104606683 -54993100 - ID_B1 SINE B4 0 224 39 2 1383 23 0 0 0 chr3 104608345 104608368 -54991415 + AT_rich Low_complexity Low_complexity 1 23 0 2 1383 235 254 13 90 chr3 104609014 104609092 -54990691 + ID4_ SINE ID 11 82 -1 2 1383 308 299 18 45 chr3 104609168 104609280 -54990503 + MIRb SINE MIR 143 251 -17 2 1383 484 321 113 23 chr3 104609927 104610316 -54989467 - L2 LINE L2 -568 2851 2428 2 1383 336 331 113 0 chr3 104610538 104610671 -54989112 + B1F1 SINE Alu 1 148 -1 2 1383 725 188 57 14 chr3 104610675 104610815 -54988968 + B1_Mur3 SINE Alu 2 147 -2 2 1383 452 260 23 61 chr3 104610837 104610968 -54988815 + RSINE1 SINE B4 11 136 -29 2 1383 1056 100 126 23 chr3 104611374 104611548 -54988235 - B2_Mm2 SINE B2 -3 192 1 2 1383 399 68 0 0 chr3 104611576 104611635 -54988148 + (CA)n Simple_repeat Simple_repeat 1 59 0 2 1383 1015 69 20 34 chr3 104611718 104611857 -54987926 + B1_Mus1 SINE Alu 2 139 -9 2 1383 252 0 0 0 chr3 104611857 104611885 -54987898 + (CAAAC)n Simple_repeat Simple_repeat 2 29 0 2 1383 3549 23 0 0 chr3 104611900 104612296 -54987487 + MTA_Mm LTR MaLR 1 396 0 2 1383 9343 34 2 1 chr3 104612296 104613393 -54986390 + MTA_Mm-int LTR MaLR 1 1098 0 2 1383 3573 20 0 0 chr3 104613394 104613789 -54985994 + MTA_Mm LTR MaLR 2 396 0 2 1383 272 316 13 0 chr3 104613850 104613929 -54985854 - B1_Mus2 SINE Alu -66 81 2 2 1383 189 74 0 0 chr3 104614061 104614088 -54985695 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2 1383 859 61 0 0 chr3 104614088 104614203 -54985580 - B1_Mus2 SINE Alu -11 136 22 2 1383 246 222 48 0 chr3 104614232 104614295 -54985488 - PB1D10 SINE Alu -8 109 44 2 1383 33 25 0 0 chr3 104614326 104614366 -54985417 + AT_rich Low_complexity Low_complexity 1 40 0 2 1383 289 209 47 0 chr3 104614386 104614454 -54985329 - PB1D9 SINE Alu -14 106 24 2 1383 297 75 0 0 chr3 104614976 104615016 -54984767 + (GAAAA)n Simple_repeat Simple_repeat 5 44 0 2 1383 398 312 0 0 chr3 104615138 104615247 -54984536 - PB1D10 SINE Alu -7 110 2 2 1383 220 299 0 15 chr3 104615247 104615315 -54984468 + B1F SINE Alu 28 94 -55 2 1383 597 151 65 32 chr3 104615422 104615545 -54984238 - B1_Mus2 SINE Alu 0 147 21 2 1383 228 211 152 71 chr3 104615741 104615853 -54983930 - Lx2B LINE L1 0 7000 6880 2 1383 198 0 0 0 chr3 104615868 104615890 -54983893 + (C)n Simple_repeat Simple_repeat 1 22 0 2 1383 1053 75 0 0 chr3 104615892 104616025 -54983758 - B1_Mus1 SINE Alu -14 134 2 3 1383 189 0 0 0 chr3 104616096 104616117 -54983666 + (A)n Simple_repeat Simple_repeat 1 21 0 3 1383 1209 62 0 0 chr3 104616144 104616290 -54983493 + B1_Mus2 SINE Alu 2 147 0 3 1383 920 115 24 49 chr3 104616303 104616467 -54983316 - B2_Mm2 SINE B2 -28 167 8 3 1383 958 209 14 45 chr3 104616497 104616717 -54983066 - B3 SINE B2 0 216 4 3 1383 299 246 113 50 chr3 104616732 104616873 -54982910 - Lx8 LINE L1 -2 7471 7322 3 1383 574 241 48 0 chr3 104616882 104617027 -54982756 - RSINE1 SINE B4 -8 157 6 3 1383 702 267 196 4 chr3 104617065 104617336 -54982447 - Lx8 LINE L1 -185 7288 6966 3 1383 443 295 15 8 chr3 104617348 104617481 -54982302 - ID_B1 SINE B4 0 224 91 3 1383 374 297 0 32 chr3 104617514 104617608 -54982175 + B1F SINE Alu 14 104 -45 3 1383 1098 95 0 20 chr3 104617608 104617758 -54982025 + B1_Mus1 SINE Alu 2 148 0 3 1383 558 0 0 0 chr3 104618292 104618354 -54981429 + (CA)n Simple_repeat Simple_repeat 2 63 0 3 1383 517 270 21 108 chr3 104618929 104619170 -54980613 + ID_B1 SINE B4 2 221 -3 3 1383 459 253 88 24 chr3 104619173 104619343 -54980440 + B3A SINE B2 2 182 -16 3 1383 264 286 0 0 chr3 104619361 104619417 -54980366 + PB1 SINE Alu 37 92 -35 3 1383 304 265 254 23 chr3 104619451 104619671 -54980112 + MER31B LTR ERV1 117 387 -79 3 1383 216 0 0 0 chr3 104621594 104621618 -54978165 + (TG)n Simple_repeat Simple_repeat 1 24 0 3 1383 326 278 46 0 chr3 104622410 104622518 -54977265 + PB1D10 SINE Alu 5 117 0 3 1383 773 154 7 59 chr3 104623124 104623276 -54976507 - B1_Mur3 SINE Alu -5 144 1 3 1383 540 241 162 35 chr3 104623496 104623724 -54976059 - MER82 DNA MER2_type -142 511 255 3 1383 354 316 78 17 chr3 104624450 104624566 -54975217 - RSINE1 SINE B4 -35 130 8 3 1383 791 201 7 0 chr3 104625074 104625218 -54974565 - B1_Mus2 SINE Alu 0 147 3 3 1383 187 0 28 83 chr3 104625234 104625270 -54974513 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 3 1383 1214 55 0 6 chr3 104625270 104625430 -54974353 - B2_Mm1t SINE B2 -32 161 3 3 1383 218 286 0 0 chr3 104625501 104625557 -54974226 - B3A SINE B2 -142 56 1 3 1383 433 192 0 0 chr3 104625588 104625666 -54974117 - B1F SINE Alu -29 120 43 3 1383 687 289 118 74 chr3 104626616 104627173 -54972610 - RLTR18 LTR ERVK -4 612 31 3 1383 464 372 35 0 chr3 104628622 104628767 -54971016 + RSINE1 SINE B4 2 151 -14 3 1383 252 0 0 0 chr3 104628809 104628837 -54970946 + (GA)n Simple_repeat Simple_repeat 1 28 0 3 1383 407 253 0 0 chr3 104628925 104629000 -54970783 - ID4 SINE ID -6 77 3 3 1383 532 277 21 14 chr3 104629023 104629166 -54970617 - ID_B1 SINE B4 0 224 81 3 1383 467 92 40 0 chr3 104629198 104629274 -54970509 + (TATATG)n Simple_repeat Simple_repeat 6 84 0 3 1383 468 277 165 1 chr3 104629275 104629434 -54970349 - B3A SINE B2 -13 203 23 3 1383 303 191 28 56 chr3 104629471 104629543 -54970240 - ID_B1 SINE B4 -10 214 145 3 1383 278 286 112 0 chr3 104629731 104629829 -54969954 - PB1D10 SINE Alu -8 109 1 3 1383 21 0 0 0 chr3 104629870 104629891 -54969892 + AT_rich Low_complexity Low_complexity 1 21 0 3 1383 247 175 31 16 chr3 104630000 104630064 -54969719 + Charlie1b DNA MER1_type 398 462 -61 3 1383 1021 147 17 0 chr3 104630277 104630454 -54969329 + B2_Mm2 SINE B2 15 194 -1 3 1383 387 256 0 0 chr3 104630503 104630589 -54969194 + ID_B1 SINE B4 86 171 -53 3 1383 369 0 0 0 chr3 104630601 104630642 -54969141 + (TAAA)n Simple_repeat Simple_repeat 4 44 0 3 1383 21 0 0 0 chr3 104630642 104630663 -54969120 + AT_rich Low_complexity Low_complexity 1 21 0 3 1383 392 341 8 121 chr3 104630667 104630787 -54968996 + ID_B1 SINE B4 2 105 -119 3 1383 975 67 89 0 chr3 104630787 104630922 -54968861 - B1_Mus2 SINE Alu 0 147 1 3 1383 392 341 8 121 chr3 104630922 104631041 -54968742 + ID_B1 SINE B4 106 214 -10 3 1383 1254 91 11 17 chr3 104631120 104631298 -54968485 - B2_Mm1a SINE B2 -15 178 2 3 1383 1258 78 66 22 chr3 104631808 104631991 -54967792 - B2_Mm2 SINE B2 -4 191 1 3 1383 276 212 91 0 chr3 104632301 104632367 -54967416 + B3A SINE B2 1 72 -126 3 1383 733 173 8 0 chr3 104632659 104632786 -54966997 + B3 SINE B2 3 130 -86 3 1383 899 122 14 0 chr3 104632821 104632969 -54966814 + (GAAA)n Simple_repeat Simple_repeat 1 150 0 3 1383 1065 234 43 16 chr3 104633231 104633487 -54966296 + ORR1D2 LTR MaLR 108 370 0 3 1383 239 286 36 0 chr3 104633709 104633765 -54966018 - tRNA-Ala-GCY_ tRNA tRNA -11 64 7 3 1383 254 275 154 0 chr3 104633832 104633923 -54965860 + B1F SINE Alu 45 149 0 3 1383 247 217 0 0 chr3 104634043 104634089 -54965694 - PB1 SINE Alu -68 59 14 3 1383 21 82 0 0 chr3 104634458 104634507 -54965276 + AT_rich Low_complexity Low_complexity 1 49 0 3 1383 592 258 23 0 chr3 104634522 104634650 -54965133 - RSINE1 SINE B4 -32 133 3 3 1383 299 238 129 45 chr3 104634999 104635034 -54964749 + B1F SINE Alu 6 144 -1 3 1383 378 139 86 75 chr3 104635034 104635127 -54964656 + ID_B1 SINE B4 129 222 -2 3 1383 1108 62 7 7 chr3 104636294 104636439 -54963344 + B1_Mus1 SINE Alu 2 146 -2 3 1383 513 226 39 31 chr3 104636498 104636626 -54963157 - B1_Mur3 SINE Alu -19 130 2 3 1383 210 343 83 9 chr3 104637454 104637563 -54962220 - MIR3 SINE MIR -5 203 87 3 1383 2012 166 52 106 chr3 104638341 104638495 -54961288 + MTC LTR MaLR 1 126 -295 3 1383 996 36 41 61 chr3 104638495 104638642 -54961141 - B1_Mus1 SINE Alu 0 148 5 3 1383 2012 166 52 106 chr3 104638642 104638932 -54960851 + MTC LTR MaLR 127 421 0 3 1383 550 275 0 20 chr3 104639333 104639485 -54960298 - B1F SINE Alu 0 149 1 3 1383 261 296 0 0 chr3 104639900 104639954 -54959829 + B4A SINE B4 92 145 -147 3 1383 484 148 20 0 chr3 104640115 104640216 -54959567 + Lx2 LINE L1 6895 6997 0 3 1383 710 188 49 28 chr3 104640542 104640684 -54959099 + B1_Mur1 SINE Alu 4 148 -1 3 1383 497 233 203 29 chr3 104640865 104641090 -54958693 - MIR SINE MIR 0 268 5 3 1383 296 285 41 77 chr3 104641128 104641214 -54958569 + L1MA8 LINE L1 6088 6173 -118 3 1383 295 311 0 36 chr3 104641214 104641324 -54958459 + PB1D7 SINE Alu 2 107 -13 3 1383 459 82 0 0 chr3 104641325 104641398 -54958385 + (CCAA)n Simple_repeat Simple_repeat 2 74 0 3 1383 296 285 41 77 chr3 104641398 104641503 -54958280 + L1MA8 LINE L1 6174 6274 -17 3 1383 1580 37 5 16 chr3 104641532 104641723 -54958060 + B2_Mm1a SINE B2 1 189 -4 3 1383 266 269 74 37 chr3 104641726 104641861 -54957922 + B1F SINE Alu 1 140 -9 3 1383 386 242 8 46 chr3 104641873 104642003 -54957780 + BC1_Mm scRNA scRNA 5 129 -23 3 1383 375 322 41 16 chr3 104642086 104642209 -54957574 - ID_B1 SINE B4 -20 204 79 3 1383 522 326 35 35 chr3 104642323 104642520 -54957263 + B3A SINE B2 2 198 0 3 1383 1223 54 0 0 chr3 104643470 104643617 -54956166 - B1_Mus2 SINE Alu 0 147 1 3 1383 227 330 43 11 chr3 104643832 104643924 -54955859 + L2 LINE L2 2513 2607 -812 3 1383 925 150 0 0 chr3 104644423 104644563 -54955220 - B1_Mus1 SINE Alu -6 142 3 3 1383 921 135 0 0 chr3 104644674 104644962 -54954821 + (CA)n Simple_repeat Simple_repeat 1 288 0 3 1383 957 128 0 0 chr3 104644981 104645161 -54954622 + (CA)n Simple_repeat Simple_repeat 1 180 0 3 1383 416 226 12 0 chr3 104645953 104646037 -54953746 - ID_B1 SINE B4 -129 95 11 3 1383 596 218 40 0 chr3 104646147 104646271 -54953512 - B1_Mur3 SINE Alu -19 130 2 3 1383 386 268 0 0 chr3 104646271 104646346 -54953437 - ID_B1 SINE B4 -66 158 84 3 1383 344 253 21 21 chr3 104646380 104646473 -54953310 - PB1D10 SINE Alu 0 117 25 3 1383 469 243 37 0 chr3 104646577 104646684 -54953099 - PB1D7 SINE Alu 0 120 10 3 1383 754 167 38 0 chr3 104646710 104646842 -54952941 - B1_Mus1 SINE Alu 0 148 12 3 1383 1210 54 0 0 chr3 104647059 104647207 -54952576 - B1_Mus1 SINE Alu 0 148 1 3 1383 225 290 78 97 chr3 104647226 104647329 -54952454 - PB1D7 SINE Alu -8 112 12 3 1383 301 296 11 0 chr3 104647647 104647735 -54952048 + RSINE1 SINE B4 31 119 -46 3 1383 297 222 97 0 chr3 104647980 104648052 -54951731 + PB1D10 SINE Alu 26 104 -13 3 1383 1187 90 60 33 chr3 104648087 104648271 -54951512 - B2_Mm2 SINE B2 -6 189 1 3 1383 698 204 46 11 chr3 104648344 104648522 -54951261 - B3 SINE B2 0 198 1 3 1383 496 278 79 11 chr3 104648543 104648721 -54951062 - B3A SINE B2 -6 192 3 3 1383 546 261 176 0 chr3 104648721 104648909 -54950874 - ID_B1 SINE B4 0 224 4 3 1383 292 217 14 0 chr3 104649095 104649164 -54950619 - RMER13A LTR ERVK 0 860 791 3 1383 2251 185 167 18 chr3 104649218 104649312 -54950471 - RMER13A LTR ERVK -220 640 543 3 1383 204 40 0 0 chr3 104649312 104649337 -54950446 + (TGGGGG)n Simple_repeat Simple_repeat 4 28 0 3 1383 2251 185 167 18 chr3 104649337 104649799 -54949984 - RMER13A LTR ERVK -318 542 3 3 1383 257 217 17 0 chr3 104649836 104649896 -54949887 + PB1D9 SINE Alu 52 112 -8 3 1383 566 169 102 0 chr3 104650581 104650699 -54949084 - B1_Mm SINE Alu -13 134 5 3 1383 500 210 108 8 chr3 104650782 104650902 -54948881 - B1F SINE Alu -10 139 8 3 1383 1597 185 64 25 chr3 104651144 104651512 -54948271 + MTC LTR MaLR 1 413 -8 3 1383 421 333 18 49 chr3 104651735 104651899 -54947884 - RSINE1 SINE B4 0 165 7 3 1383 296 261 0 0 chr3 104651999 104652068 -54947715 + RSINE1 SINE B4 2 70 -95 3 1383 466 292 0 16 chr3 104652225 104652347 -54947436 + B1F1 SINE Alu 9 128 -21 3 1383 1161 62 0 0 chr3 104652418 104652562 -54947221 + B1_Mus2 SINE Alu 2 145 -2 4 1383 207 0 0 0 chr3 104652562 104652585 -54947198 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 4 1383 716 160 130 0 chr3 104652710 104652841 -54946942 - B1_Mur2 SINE Alu 0 149 2 4 1383 401 276 78 29 chr3 104653623 104653802 -54945981 + MER31B LTR ERV1 204 390 -76 4 1383 615 200 114 8 chr3 104653944 104654075 -54945708 + B1_Mur2 SINE Alu 1 145 -4 4 1383 198 103 0 0 chr3 104654234 104654263 -54945520 + (T)n Simple_repeat Simple_repeat 1 29 0 4 1383 1153 70 0 0 chr3 104654263 104654406 -54945377 - B1_Mm SINE Alu 0 147 5 4 1383 1225 41 7 0 chr3 104654961 104655107 -54944676 + B1_Mm SINE Alu 1 147 0 4 1383 348 186 0 0 chr3 104655212 104655271 -54944512 + B1_Mus2 SINE Alu 79 137 -10 4 1383 651 271 31 26 chr3 104655640 104655833 -54943950 - B3A SINE B2 -3 195 2 4 1383 733 186 211 17 chr3 104656366 104656546 -54943237 + B3 SINE B2 2 216 0 4 1383 23 33 0 0 chr3 104656651 104656681 -54943102 + AT_rich Low_complexity Low_complexity 1 30 0 4 1383 1498 73 5 0 chr3 104657026 104657218 -54942565 + B2_Mm1t SINE B2 1 193 0 4 1383 546 281 41 30 chr3 104658076 104658245 -54941538 + B3A SINE B2 1 171 -27 4 1383 849 143 13 52 chr3 104658327 104658482 -54941301 + B1_Mur2 SINE Alu 1 149 0 4 1383 766 55 60 40 chr3 104658488 104658638 -54941145 + RMER17B LTR ERVK 312 464 -494 4 1383 238 209 0 0 chr3 104658672 104658715 -54941068 + PB1D9 SINE Alu 49 91 -29 4 1383 333 322 16 24 chr3 104658732 104658856 -54940927 + RSINE1 SINE B4 2 124 -41 4 1383 244 191 0 21 chr3 104659027 104659075 -54940708 + ID_B1 SINE B4 86 132 -92 4 1383 1277 145 148 1 chr3 104659106 104659405 -54940378 + ORR1B2 LTR MaLR 9 375 -3 4 1383 728 142 63 0 chr3 104659403 104659544 -54940239 + B2_Mm2 SINE B2 2 172 -23 4 1383 334 271 0 0 chr3 104659684 104659754 -54940029 + ID4_ SINE ID 9 78 -5 4 1383 361 241 0 12 chr3 104659913 104659997 -54939786 - B1_Mur1 SINE Alu -2 147 65 4 1383 739 76 246 0 chr3 104660013 104660131 -54939652 - B1_Mus2 SINE Alu 0 147 1 4 1383 2546 53 6 0 chr3 104660287 104660626 -54939157 + ORR1A1 LTR MaLR 6 346 0 4 1383 805 52 252 0 chr3 104661129 104661244 -54938539 - B1_Mus1 SINE Alu -2 146 3 4 1383 696 176 8 0 chr3 104661811 104661942 -54937841 - B1_Mur4 SINE Alu -1 149 18 4 1383 347 248 30 53 chr3 104662464 104662596 -54937187 - RSINE1 SINE B4 -35 130 2 4 1383 201 74 0 0 chr3 104662644 104662671 -54937112 + (GGA)n Simple_repeat Simple_repeat 3 29 0 4 1383 534 256 55 23 chr3 104662699 104662827 -54936956 + B1F SINE Alu 17 148 -1 4 1383 278 243 43 86 chr3 104662867 104662984 -54936799 + PB1D7 SINE Alu 1 112 -8 4 1383 1193 68 0 0 chr3 104663223 104663369 -54936414 + B1_Mus2 SINE Alu 2 147 0 4 1383 352 314 0 22 chr3 104664126 104664263 -54935520 - ID_B1 SINE B4 -7 217 84 4 1383 400 282 68 15 chr3 104664296 104664429 -54935354 + B1F SINE Alu 10 149 0 4 1383 325 304 0 42 chr3 104664525 104664645 -54935138 - PB1D10 SINE Alu -1 116 2 4 1383 1022 118 0 46 chr3 104664760 104664911 -54934872 - B1_Mur4 SINE Alu -5 145 2 4 1383 748 148 82 0 chr3 104665008 104665130 -54934653 - B1_Mur2 SINE Alu -17 132 1 4 1383 465 246 50 8 chr3 104665227 104665346 -54934437 + B1F2 SINE Alu 26 149 0 4 1383 1167 61 0 7 chr3 104665609 104665746 -54934037 + B1_Mus2 SINE Alu 1 137 -10 4 1383 207 0 0 0 chr3 104665746 104665769 -54934014 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 4 1383 1139 28 28 7 chr3 104669009 104669152 -54930631 - B1_Mus1 SINE Alu 0 148 3 4 1383 561 302 0 51 chr3 104669490 104669647 -54930136 + ID_B1 SINE B4 68 216 -8 4 1383 1665 31 0 0 chr3 104669853 104670045 -54929738 - B2_Mm1a SINE B2 0 193 2 4 1383 25 0 0 0 chr3 104670144 104670169 -54929614 + AT_rich Low_complexity Low_complexity 1 25 0 4 1383 334 127 0 35 chr3 104670187 104670244 -54929539 - B2_Mm2 SINE B2 -94 101 47 4 1383 1207 108 17 0 chr3 104670291 104670467 -54929316 - B2_Mm1t SINE B2 -14 179 1 4 1383 647 310 299 21 chr3 104670520 104670839 -54928944 + MER47B DNA MER2_type 3 410 -8 4 1383 609 214 9 0 chr3 104671227 104671339 -54928444 - PB1D7 SINE Alu -7 113 1 4 1383 454 190 171 23 chr3 104671377 104671506 -54928277 + RSINE1 SINE B4 12 159 -6 4 1383 689 230 113 36 chr3 104671652 104671846 -54927937 + B4A SINE B4 1 209 -83 4 1383 524 251 126 16 chr3 104672009 104672199 -54927584 - ID_B1 SINE B4 -13 211 1 4 1383 282 267 98 16 chr3 104672388 104672510 -54927273 + MIR SINE MIR 131 262 0 4 1383 24 0 0 0 chr3 104672577 104672601 -54927182 + AT_rich Low_complexity Low_complexity 1 24 0 4 1383 984 126 14 0 chr3 104672809 104672952 -54926831 - B1_Mur4 SINE Alu 0 150 6 4 1383 388 189 0 144 chr3 104672854 104672965 -54926818 - MT2B LTR ERVL -344 257 163 4 1383 281 198 66 95 chr3 104673159 104673287 -54926496 - MIRb SINE MIR -103 165 33 4 1383 378 344 0 0 chr3 104673398 104673494 -54926289 - PB1D10 SINE Alu -21 96 1 4 1383 954 277 78 21 chr3 104674042 104674285 -54925498 + MLT1A0 LTR MaLR 54 310 -55 4 1383 344 387 24 66 chr3 104674342 104674428 -54925355 - MLT1J LTR MaLR -107 405 327 4 1383 691 240 7 0 chr3 104674428 104674574 -54925209 - B1_Mur1 SINE Alu -1 148 2 4 1383 344 387 24 66 chr3 104674574 104674653 -54925130 - MLT1J LTR MaLR -186 326 248 4 1383 494 294 103 13 chr3 104674697 104674852 -54924931 + ID_B1 SINE B4 35 203 -21 4 1383 438 20 0 0 chr3 104675150 104675201 -54924582 + (TG)n Simple_repeat Simple_repeat 1 51 0 4 1383 973 235 58 14 chr3 104675267 104675474 -54924309 - B3 SINE B2 0 216 1 4 1383 875 270 52 0 chr3 104675499 104675729 -54924054 - B4A SINE B4 -50 242 1 4 1383 724 158 244 0 chr3 104675794 104675958 -54923825 - B3 SINE B2 -12 204 1 4 1383 191 250 0 0 chr3 104675978 104676014 -54923769 + L2b LINE L2 3116 3151 -224 4 1383 477 0 0 0 chr3 104676024 104676077 -54923706 + (TG)n Simple_repeat Simple_repeat 2 54 0 4 1383 434 319 75 0 chr3 104676839 104676999 -54922784 - Lx8 LINE L1 -307 7166 6995 4 1383 519 176 22 0 chr3 104677053 104677144 -54922639 - B1_Mur2 SINE Alu -2 147 55 4 1383 200 34 0 33 chr3 104677183 104677213 -54922570 + (TTTTG)n Simple_repeat Simple_repeat 1 29 0 4 1383 743 188 0 0 chr3 104677218 104677335 -54922448 - B1_Mur2 SINE Alu -31 118 2 4 1383 358 227 0 120 chr3 104677251 104677351 -54922432 - MT2B LTR ERVL -361 240 153 4 1383 329 263 11 37 chr3 104677465 104677562 -54922221 - B1_Mur2 SINE Alu -2 147 56 4 1383 776 155 101 0 chr3 104678334 104678463 -54921320 + B1_Mus1 SINE Alu 7 148 0 4 1383 529 269 132 59 chr3 104678534 104678806 -54920977 + B4 SINE B4 1 292 0 4 1383 423 83 0 0 chr3 104678820 104678880 -54920903 + (CA)n Simple_repeat Simple_repeat 1 60 0 4 1383 365 304 88 72 chr3 104679336 104679412 -54920371 - MIR SINE MIR -59 203 123 4 1383 666 216 45 0 chr3 104679412 104679546 -54920237 + B1F SINE Alu 1 140 -9 4 1383 279 0 0 0 chr3 104679551 104679582 -54920201 + (TGAA)n Simple_repeat Simple_repeat 4 34 0 4 1383 365 296 98 36 chr3 104679582 104679694 -54920089 - MIR SINE MIR -80 128 10 4 1383 276 265 161 8 chr3 104680093 104680211 -54919572 - Charlie2a DNA MER1_type -37 2824 2689 4 1383 198 0 0 0 chr3 104680377 104680399 -54919384 + (TTTTTG)n Simple_repeat Simple_repeat 3 24 0 4 1383 249 227 135 64 chr3 104680516 104680657 -54919126 + Charlie2a DNA MER1_type 1450 1600 -1261 4 1383 246 228 103 65 chr3 104680698 104680853 -54918930 - Charlie2a DNA MER1_type -344 2517 2357 4 1383 697 230 37 0 chr3 104680857 104680992 -54918791 - B1_Mur2 SINE Alu -9 140 1 4 1383 232 302 101 90 chr3 104680995 104681184 -54918599 - Charlie2a DNA MER1_type -1197 1664 1474 4 1383 186 43 0 0 chr3 104681455 104681478 -54918305 + (T)n Simple_repeat Simple_repeat 1 23 0 4 1383 1094 78 7 0 chr3 104681501 104681643 -54918140 - B1_Mus1 SINE Alu -5 143 1 4 1383 216 0 0 0 chr3 104681747 104681771 -54918012 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 4 1383 313 245 217 7 chr3 104681778 104681930 -54917853 - ID_B1 SINE B4 -8 216 33 4 1383 384 206 0 0 chr3 104682045 104682115 -54917668 + B1F SINE Alu 1 70 -47 4 1383 320 294 34 141 chr3 104682176 104682473 -54917310 - Charlie2a DNA MER1_type -2567 294 30 4 1383 250 186 0 67 chr3 104683169 104683244 -54916539 + T-rich Low_complexity Low_complexity 4 73 0 4 1383 558 239 43 21 chr3 104683617 104683758 -54916025 - B1F SINE Alu 0 149 6 4 1383 341 306 51 70 chr3 104683623 104683781 -54916002 - B4 SINE B4 -69 223 69 4 1383 269 307 13 13 chr3 104684089 104684165 -54915618 - ID4_ SINE ID -5 78 3 4 1383 639 253 20 14 chr3 104684167 104684315 -54915468 - B1F1 SINE Alu 0 149 1 4 1383 499 309 16 0 chr3 104684350 104684476 -54915307 - ID_B1 SINE B4 -1 223 96 4 1383 23 33 0 0 chr3 104685312 104685342 -54914441 + AT_rich Low_complexity Low_complexity 1 30 0 4 1383 1708 21 0 0 chr3 104686394 104686586 -54913197 - B2_Mm1a SINE B2 0 193 2 4 1383 277 233 13 52 chr3 104687086 104687163 -54912620 + L1M4 LINE L1 553 626 -5916 4 1383 1498 58 16 0 chr3 104687186 104687374 -54912409 - B2_Mm2 SINE B2 -3 192 2 4 1383 303 246 125 18 chr3 104687440 104687552 -54912231 + L1M4 LINE L1 3888 4011 -2135 4 1383 324 188 0 0 chr3 104687637 104687706 -54912077 + (CATATA)n Simple_repeat Simple_repeat 6 74 0 4 1383 554 213 100 40 chr3 104687735 104687984 -54911799 + L1M4 LINE L1 820 1083 -5459 4 1383 360 204 150 20 chr3 104687987 104688087 -54911696 + PB1D7 SINE Alu 5 117 -3 5 1383 436 274 41 12 chr3 104688185 104688355 -54911428 + L1M4 LINE L1 4571 4745 -1893 4 1383 239 281 10 0 chr3 104688437 104688533 -54911250 + L1M4 LINE L1 4864 4960 -1678 4 1383 377 313 61 0 chr3 104688547 104688662 -54911121 + RSINE1 SINE B4 44 165 0 5 1383 918 280 63 82 chr3 104688685 104688859 -54910924 + L1M4 LINE L1 4953 5106 -1538 4 1383 1003 212 39 5 chr3 104688859 104689063 -54910720 + B3 SINE B2 5 215 -1 5 1383 918 280 63 82 chr3 104689063 104689440 -54910343 + L1M4 LINE L1 5107 5494 -1150 4 1383 204 229 21 0 chr3 104689534 104689582 -54910201 + GA-rich Low_complexity Low_complexity 3 51 0 5 1383 486 314 0 0 chr3 104689906 104690008 -54909775 + RSINE1 SINE B4 60 161 -4 5 1383 403 235 0 0 chr3 104690190 104690271 -54909512 - ID4 SINE ID -1 82 2 5 1383 343 224 53 0 chr3 104690353 104690429 -54909354 + ID4 SINE ID 1 80 -3 5 1383 555 91 13 0 chr3 104690515 104690592 -54909191 - ID4 SINE ID -3 80 3 5 1383 512 243 9 26 chr3 104690650 104690764 -54909019 + PB1D10 SINE Alu 6 117 0 5 1383 27 29 0 0 chr3 104690866 104690900 -54908883 + AT_rich Low_complexity Low_complexity 1 34 0 5 1383 392 313 43 0 chr3 104691008 104691123 -54908660 - B1F SINE Alu -13 136 17 5 1383 367 294 147 0 chr3 104691292 104691435 -54908348 - MER33 DNA MER1_type -160 164 1 5 1383 358 154 26 0 chr3 104693066 104693144 -54906639 + CT-rich Low_complexity Low_complexity 4 83 0 5 1383 26 30 0 0 chr3 104693703 104693736 -54906047 + AT_rich Low_complexity Low_complexity 1 33 0 5 1383 705 242 20 13 chr3 104693769 104693920 -54905863 - RSINE1 SINE B4 -10 155 4 5 1383 23 54 0 0 chr3 104693958 104693995 -54905788 + AT_rich Low_complexity Low_complexity 1 37 0 5 1383 21 0 0 0 chr3 104694229 104694250 -54905533 + AT_rich Low_complexity Low_complexity 1 21 0 5 1383 22 0 0 0 chr3 104694554 104694576 -54905207 + AT_rich Low_complexity Low_complexity 1 22 0 5 1383 919 124 209 28 chr3 104694580 104694762 -54905021 - B3 SINE B2 0 216 2 5 1383 741 159 91 0 chr3 104694819 104694951 -54904832 - B1_Mur4 SINE Alu -5 145 2 5 1383 246 234 0 0 chr3 104695041 104695105 -54904678 + T-rich Low_complexity Low_complexity 1 64 0 5 1383 244 341 34 57 chr3 104695428 104695605 -54904178 - L2c LINE L2 -21 3366 3194 5 1383 358 306 56 19 chr3 104695717 104695877 -54903906 - MIRc SINE MIR -58 210 45 5 1383 287 204 113 6 chr3 104696032 104696094 -54903689 - PB1D9 SINE Alu -58 62 1 5 1383 21 36 0 0 chr3 104696932 104696960 -54902823 + AT_rich Low_complexity Low_complexity 1 28 0 5 1383 281 338 53 23 chr3 104697099 104697232 -54902551 - MIRc SINE MIR -121 147 11 5 1383 226 324 54 40 chr3 104697515 104697589 -54902194 + MIRb SINE MIR 38 112 -156 5 1383 819 154 240 12 chr3 104697604 104697775 -54902008 + B3 SINE B2 1 210 -6 5 1383 404 277 154 0 chr3 104697862 104697992 -54901791 + ID_B1 SINE B4 75 224 0 5 1383 618 273 35 57 chr3 104698881 104699110 -54900673 + ID_B1 SINE B4 1 224 0 5 1383 271 264 0 53 chr3 104699821 104699897 -54899886 + RSINE1 SINE B4 94 165 0 5 1383 307 304 96 19 chr3 104699978 104700082 -54899701 + PB1D10 SINE Alu 6 117 0 5 1383 990 260 102 17 chr3 104700394 104700746 -54899037 - Lx8 LINE L1 -152 7321 6940 5 1383 346 340 55 6 chr3 104700784 104700949 -54898834 - L1MEg LINE L1 -2531 3615 3444 5 1383 634 268 28 0 chr3 104700972 104701114 -54898669 - ID_B1 SINE B4 -6 218 73 5 1383 276 318 99 40 chr3 104701176 104701399 -54898384 - L1MEg LINE L1 -5502 740 505 5 1383 395 390 0 0 chr3 104701729 104701852 -54897931 + MIR SINE MIR 10 132 -130 5 1383 681 161 0 0 chr3 104701861 104701991 -54897792 + (TG)n Simple_repeat Simple_repeat 1 130 0 5 1383 535 276 31 0 chr3 104701991 104702118 -54897665 - ID_B1 SINE B4 -10 214 84 5 1383 186 286 45 56 chr3 104702120 104702209 -54897574 + MIRb SINE MIR 129 216 -52 5 1383 1065 30 84 0 chr3 104702216 104702347 -54897436 + B1_Mm SINE Alu 1 142 -5 5 1383 3380 177 75 3 chr3 104702475 104703154 -54896629 - RMER1B Other Other -9 1057 11 5 1383 685 11 0 32 chr3 104703239 104703332 -54896451 + L1_Mus2 LINE L1 6477 6566 0 5 1383 23 0 0 0 chr3 104703356 104703379 -54896404 + AT_rich Low_complexity Low_complexity 1 23 0 5 1383 31 26 0 0 chr3 104703637 104703675 -54896108 + AT_rich Low_complexity Low_complexity 1 38 0 5 1383 783 134 119 13 chr3 104703693 104703852 -54895931 - B2_Mm2 SINE B2 -18 177 2 5 1383 321 209 64 85 chr3 104703908 104704002 -54895781 + L1M4 LINE L1 4616 4707 -1439 5 1383 230 282 83 15 chr3 104704010 104704143 -54895640 + L1M4 LINE L1 4674 4815 -1331 5 1383 227 185 37 0 chr3 104704153 104704207 -54895576 + L1M4 LINE L1 5301 5356 -823 5 1383 300 236 226 18 chr3 104704322 104704486 -54895297 + L1M4 LINE L1 5529 5726 -454 5 1383 452 274 65 19 chr3 104705068 104705251 -54894532 - B4 SINE B4 -9 283 1 5 1383 458 284 60 15 chr3 104705256 104705544 -54894239 - L1MA4 LINE L1 -361 5939 5603 5 1383 197 59 0 56 chr3 104705559 104705595 -54894188 + (TTTG)n Simple_repeat Simple_repeat 3 36 0 5 1383 808 57 0 0 chr3 104705595 104705701 -54894082 - B1_Mus2 SINE Alu 0 147 42 5 1383 594 316 33 11 chr3 104705710 104705982 -54893801 - L1MA4 LINE L1 -703 5597 5320 5 1383 451 246 38 16 chr3 104706069 104706255 -54893528 - L1MA4 LINE L1 -819 5324 5135 5 1383 861 254 24 19 chr3 104707276 104707489 -54892294 - B3 SINE B2 0 216 3 5 1383 252 263 140 0 chr3 104707508 104707622 -54892161 - L1MB7 LINE L1 -16 6168 6039 5 1383 422 262 9 46 chr3 104707633 104707741 -54892042 - RSINE1 SINE B4 -61 104 1 5 1383 350 294 147 0 chr3 104707752 104707929 -54891854 + L1M5 LINE L1 5596 5798 -364 5 1383 1549 223 63 8 chr3 104708345 104708742 -54891041 + MTD LTR MaLR 1 419 0 5 1383 277 229 49 0 chr3 104709015 104709076 -54890707 + PB1D7 SINE Alu 49 112 -8 5 1383 294 264 42 0 chr3 104709073 104709145 -54890638 + PB1D7 SINE Alu 43 117 -3 5 1383 356 200 48 36 chr3 104709295 104709378 -54890405 + ID_B1 SINE B4 139 222 -2 5 1383 24 53 0 0 chr3 104709378 104709416 -54890367 + AT_rich Low_complexity Low_complexity 1 38 0 5 1383 457 254 17 8 chr3 104709596 104709715 -54890068 + PB1D9 SINE Alu 1 120 0 5 1383 451 228 62 7 chr3 104710373 104710519 -54889264 - L5 LINE RTE -4 2261 2108 5 1383 269 299 104 0 chr3 104711068 104711145 -54888638 - B1F1 SINE Alu -64 85 1 5 1383 796 96 0 0 chr3 104711262 104711377 -54888406 + B1_Mm SINE Alu 33 147 0 5 1383 580 124 19 0 chr3 104711379 104711484 -54888299 + (GAAA)n Simple_repeat Simple_repeat 3 109 0 5 1383 272 299 0 5 chr3 104711669 104711737 -54888046 - B1F SINE Alu -15 134 40 5 1383 521 316 90 93 chr3 104711848 104712193 -54887590 + ORR1E LTR MaLR 1 344 -15 5 1383 4678 254 89 62 chr3 104712205 104712532 -54887251 + ORR1E-int LTR MaLR 1 341 -1239 5 1383 617 272 25 31 chr3 104712532 104712681 -54887102 + RSINE1 SINE B4 4 153 -12 5 1383 654 13 0 0 chr3 104712681 104712756 -54887027 + (TC)n Simple_repeat Simple_repeat 1 75 0 5 1383 617 272 25 31 chr3 104712756 104712769 -54887014 + RSINE1 SINE B4 154 165 0 5 1383 4678 254 89 62 chr3 104712769 104713099 -54886684 + ORR1E-int LTR MaLR 342 665 -915 5 1383 822 129 37 15 chr3 104713099 104713233 -54886550 - B1_Mur4 SINE Alu -11 139 3 5 1383 4678 254 89 62 chr3 104713233 104714080 -54885703 + ORR1E-int LTR MaLR 666 1546 -34 5 1383 670 285 118 57 chr3 104714068 104714404 -54885379 + ORR1E LTR MaLR 8 419 0 5 1383 954 233 15 5 chr3 104714493 104714696 -54885087 + B3 SINE B2 1 205 -11 5 1383 233 268 0 102 chr3 104714842 104714950 -54884833 + MT2B LTR ERVL 155 251 -350 5 1383 459 196 47 0 chr3 104714864 104714971 -54884812 + PB1D9 SINE Alu 9 120 0 5 1383 441 0 0 0 chr3 104715001 104715050 -54884733 + (TG)n Simple_repeat Simple_repeat 2 50 0 5 1383 544 154 99 0 chr3 104715290 104715381 -54884402 + B1_Mus2 SINE Alu 41 140 -7 5 1383 249 354 24 12 chr3 104715463 104715546 -54884237 + ID SINE ID 1 84 -140 5 1383 260 119 17 0 chr3 104715687 104715746 -54884037 + (TTTTTG)n Simple_repeat Simple_repeat 2 61 0 5 1383 1209 61 0 0 chr3 104715749 104715896 -54883887 - B1_Mus1 SINE Alu 0 148 2 5 1383 516 32 0 0 chr3 104715999 104716061 -54883722 + (TTCC)n Simple_repeat Simple_repeat 1 62 0 5 1383 618 51 0 0 chr3 104716061 104716138 -54883645 + (TC)n Simple_repeat Simple_repeat 2 79 0 5 1383 943 213 8 105 chr3 104716192 104716446 -54883337 + B4A SINE B4 2 229 -63 5 1383 433 284 123 34 chr3 104716446 104716592 -54883191 + RSINE1 SINE B4 2 160 -5 5 1383 266 212 40 108 chr3 104716651 104716725 -54883058 + B4A SINE B4 224 292 0 5 1383 842 267 34 0 chr3 104717077 104717283 -54882500 - B3 SINE B2 -3 213 1 5 1383 294 260 68 0 chr3 104717548 104717621 -54882162 - ID4_ SINE ID -3 80 3 5 1383 585 0 0 0 chr3 104718712 104718777 -54881006 + (TA)n Simple_repeat Simple_repeat 2 66 0 5 1383 331 275 12 0 chr3 104719395 104719475 -54880308 - ID4_ SINE ID -2 81 1 5 1383 423 281 9 19 chr3 104719527 104719632 -54880151 + PB1D10 SINE Alu 1 104 -13 5 1383 429 70 0 0 chr3 104719632 104719689 -54880094 + (TGGA)n Simple_repeat Simple_repeat 4 60 0 5 1383 316 308 56 0 chr3 104719878 104719985 -54879798 + L1MB7 LINE L1 5602 5714 -470 5 1383 836 243 52 14 chr3 104720020 104720233 -54879550 - ID_B1 SINE B4 -2 222 2 5 1383 228 135 0 0 chr3 104720243 104720280 -54879503 + (T)n Simple_repeat Simple_repeat 1 37 0 5 1383 28 29 0 0 chr3 104720343 104720378 -54879405 + AT_rich Low_complexity Low_complexity 1 35 0 5 1383 2020 101 9 54 chr3 104720501 104720835 -54878948 - L1_Mus4 LINE L1 -3 6633 6315 5 1383 270 269 175 0 chr3 104720843 104721003 -54878780 + L1MB7 LINE L1 5728 5915 -269 5 1383 229 45 21 62 chr3 104721200 104721248 -54878535 + (TTTTTG)n Simple_repeat Simple_repeat 4 49 0 5 1383 1132 76 0 0 chr3 104721249 104721394 -54878389 - B1_Mus2 SINE Alu -2 145 1 5 1383 1392 78 0 6 chr3 104721598 104721779 -54878004 + B2_Mm2 SINE B2 2 181 -14 5 1383 672 233 156 0 chr3 104722860 104723040 -54876743 + B3 SINE B2 1 208 -8 5 1383 1597 233 63 13 chr3 104723126 104723521 -54876262 - MTD LTR MaLR 0 419 5 5 1383 261 186 51 0 chr3 104723694 104723753 -54876030 - L1MB3 LINE L1 -6 6177 6116 5 1383 260 158 110 0 chr3 104724031 104724113 -54875670 + MER119 DNA MER1_type 396 486 -97 5 1383 531 75 32 0 chr3 104725300 104725394 -54874389 + (TG)n Simple_repeat Simple_repeat 2 98 0 5 1383 468 195 90 33 chr3 104725405 104725527 -54874256 - B1_Mur1 SINE Alu -7 142 14 6 1383 667 260 84 6 chr3 104725907 104726085 -54873698 - B3A SINE B2 -6 192 1 6 1383 558 133 0 0 chr3 104726087 104726177 -54873606 + (TG)n Simple_repeat Simple_repeat 2 91 0 6 1383 1080 254 39 21 chr3 104726186 104726468 -54873315 - B4A SINE B4 -4 288 2 6 1384 445 200 26 35 chr3 104726984 104727098 -54872685 + PB1D10 SINE Alu 3 115 -2 6 1384 1069 184 48 5 chr3 104727281 104727488 -54872295 - B3 SINE B2 0 216 1 6 1384 23 33 0 0 chr3 104728428 104728458 -54871325 + AT_rich Low_complexity Low_complexity 1 30 0 6 1384 23 0 0 0 chr3 104728495 104728518 -54871265 + AT_rich Low_complexity Low_complexity 1 23 0 6 1384 194 262 0 0 chr3 104728654 104728696 -54871087 - L2a LINE L2 -9 3417 3376 6 1384 190 261 43 0 chr3 104728664 104728710 -54871073 - MIRb SINE MIR -15 253 206 6 1384 210 333 11 11 chr3 104729087 104729175 -54870608 - MIRb SINE MIR -176 92 5 6 1384 588 29 0 0 chr3 104730115 104730185 -54869598 + (TTCC)n Simple_repeat Simple_repeat 3 72 0 6 1384 264 30 0 0 chr3 104730188 104730221 -54869562 + (TCTG)n Simple_repeat Simple_repeat 4 36 0 6 1384 1068 108 0 7 chr3 104730224 104730373 -54869410 - B1_Mus1 SINE Alu 0 148 1 6 1384 36 40 0 0 chr3 104730438 104730488 -54869295 + AT_rich Low_complexity Low_complexity 1 50 0 6 1384 424 310 67 44 chr3 104730499 104730634 -54869149 + RSINE1 SINE B4 3 140 -25 6 1384 970 103 7 7 chr3 104730925 104731062 -54868721 + B1_Mur4 SINE Alu 1 137 -13 6 1384 425 274 33 33 chr3 104732235 104732386 -54867397 + MER5A1 DNA MER1_type 12 162 -4 6 1384 406 258 155 10 chr3 104732486 104732686 -54867097 + MIR SINE MIR 9 237 -25 6 1384 430 291 0 16 chr3 104733089 104733218 -54866565 - PB1 SINE Alu 0 127 1 6 1384 337 232 49 0 chr3 104733377 104733459 -54866324 - B1_Mur2 SINE Alu -3 146 61 6 1384 420 198 8 40 chr3 104733381 104733510 -54866273 - ID_B1 SINE B4 -7 217 2 6 1384 929 238 59 0 chr3 104734928 104735130 -54864653 + ID_B1 SINE B4 4 217 -7 6 1384 287 143 25 38 chr3 104735131 104735211 -54864572 + GA-rich Low_complexity Low_complexity 1 79 0 6 1384 273 151 0 0 chr3 104735403 104735456 -54864327 + (TG)n Simple_repeat Simple_repeat 1 53 0 6 1384 597 279 44 6 chr3 104735456 104735636 -54864147 - B3A SINE B2 -11 187 1 6 1384 287 256 29 0 chr3 104735722 104735811 -54863972 - BC1_Mm scRNA scRNA -59 93 2 6 1384 557 294 111 31 chr3 104735910 104735982 -54863801 + B4A SINE B4 3 78 -214 6 1384 429 20 0 0 chr3 104735982 104736032 -54863751 + (TTTTG)n Simple_repeat Simple_repeat 3 52 0 6 1384 557 294 111 31 chr3 104736032 104736080 -54863703 + B4A SINE B4 79 131 -161 6 1384 213 94 0 0 chr3 104736080 104736112 -54863671 + (CGTG)n Simple_repeat Simple_repeat 1 32 0 6 1384 557 294 111 31 chr3 104736112 104736215 -54863568 + B4A SINE B4 132 244 -48 6 1384 551 15 0 14 chr3 104736216 104736285 -54863498 + (CA)n Simple_repeat Simple_repeat 1 68 0 6 1384 363 192 77 0 chr3 104737042 104737120 -54862663 + PB1D10 SINE Alu 26 109 -8 6 1384 255 61 0 0 chr3 104737121 104737154 -54862629 + (CA)n Simple_repeat Simple_repeat 2 34 0 6 1384 457 230 133 0 chr3 104737263 104737376 -54862407 + B1_Mur1 SINE Alu 20 147 -2 6 1384 259 315 74 37 chr3 104737907 104738042 -54861741 - ID_B1 SINE B4 -83 141 2 6 1384 669 212 7 20 chr3 104738293 104738442 -54861341 + B1_Mur3 SINE Alu 2 148 -1 6 1384 437 329 43 43 chr3 104738456 104738618 -54861165 + RSINE1 SINE B4 2 163 -2 6 1384 762 230 158 16 chr3 104739640 104739887 -54859896 - B4 SINE B4 -9 283 2 6 1384 30 27 0 0 chr3 104739894 104739931 -54859852 + AT_rich Low_complexity Low_complexity 1 37 0 6 1384 436 176 58 23 chr3 104740853 104740940 -54858843 - PB1D7 SINE Alu -8 112 23 6 1384 429 253 178 92 chr3 104744232 104744406 -54855377 - RMER30 DNA MER1_type -7 195 7 6 1384 1098 30 0 22 chr3 104745140 104745278 -54854505 + B1_Mus2 SINE Alu 2 136 -11 6 1384 530 188 139 8 chr3 104747026 104747155 -54852628 - B1F SINE Alu -3 146 1 6 1384 180 0 0 0 chr3 104748256 104748276 -54851507 + (CACCC)n Simple_repeat Simple_repeat 3 22 0 6 1384 206 318 64 0 chr3 104748516 104748626 -54851157 - MIRm SINE MIR -108 168 52 6 1384 1357 102 16 0 chr3 104750191 104750377 -54849406 - B2_Mm2 SINE B2 -5 190 2 6 1384 239 356 22 0 chr3 104750603 104750738 -54849045 + MIR SINE MIR 24 161 -101 6 1384 466 294 28 14 chr3 104750739 104750884 -54848899 + B1F SINE Alu 3 149 0 6 1384 393 219 14 0 chr3 104751241 104751314 -54848469 + ID4 SINE ID 2 75 -8 6 1384 456 342 29 76 chr3 104751435 104751462 -54848321 - RSINE1 SINE B4 0 165 143 6 1384 299 85 0 21 chr3 104751462 104751510 -54848273 + (CA)n Simple_repeat Simple_repeat 2 48 0 6 1384 456 342 29 76 chr3 104751510 104751653 -54848130 - RSINE1 SINE B4 -23 142 3 6 1384 574 214 69 53 chr3 104751657 104751691 -54848092 - B2_Mm2 SINE B2 -4 191 162 6 1384 357 93 0 0 chr3 104751691 104751745 -54848038 + (TG)n Simple_repeat Simple_repeat 1 54 0 6 1384 695 191 88 2 chr3 104751745 104751898 -54847885 - B3A SINE B2 -34 161 1 6 1384 1098 61 0 58 chr3 104752288 104752444 -54847339 + B1_Mus2 SINE Alu 1 147 0 6 1384 415 214 86 0 chr3 104752538 104752655 -54847128 + Tigger7 DNA MER2_type 2335 2461 -30 6 1384 441 0 0 0 chr3 104753602 104753651 -54846132 + (TG)n Simple_repeat Simple_repeat 2 50 0 6 1384 473 293 24 43 chr3 104754623 104754787 -54844996 + RSINE1 SINE B4 3 163 -2 6 1384 23 33 0 0 chr3 104754806 104754836 -54844947 + AT_rich Low_complexity Low_complexity 1 30 0 6 1384 630 251 88 57 chr3 104754844 104755106 -54844677 + B4A SINE B4 1 270 -22 6 1384 21 0 0 0 chr3 104755163 104755184 -54844599 + AT_rich Low_complexity Low_complexity 1 21 0 6 1384 344 254 8 63 chr3 104755191 104755317 -54844466 + PB1D7 SINE Alu 1 119 -1 6 1384 641 203 65 7 chr3 104755334 104755473 -54844310 + B1_Mur2 SINE Alu 2 148 -1 6 1384 213 121 0 0 chr3 104755582 104755615 -54844168 + (A)n Simple_repeat Simple_repeat 1 33 0 6 1384 270 0 0 0 chr3 104756201 104756231 -54843552 + (TG)n Simple_repeat Simple_repeat 2 31 0 6 1384 342 0 0 0 chr3 104756231 104756269 -54843514 + (CA)n Simple_repeat Simple_repeat 2 39 0 6 1384 332 325 63 8 chr3 104756296 104756423 -54843360 - B1F SINE Alu -15 134 1 6 1384 186 219 0 0 chr3 104756684 104756748 -54843035 + CT-rich Low_complexity Low_complexity 2 65 0 6 1384 243 0 0 0 chr3 104756748 104756775 -54843008 + (CA)n Simple_repeat Simple_repeat 1 27 0 6 1384 189 0 0 0 chr3 104756775 104756796 -54842987 + (CCA)n Simple_repeat Simple_repeat 3 23 0 6 1384 537 202 88 8 chr3 104758411 104758536 -54841247 + B1_Mur1 SINE Alu 3 137 -12 6 1384 387 0 0 0 chr3 104758881 104758924 -54840859 + (CA)n Simple_repeat Simple_repeat 1 43 0 6 1384 198 0 0 0 chr3 104759397 104759419 -54840364 + (CAGGC)n Simple_repeat Simple_repeat 5 26 0 6 1384 196 330 23 0 chr3 104759686 104759774 -54840009 - L3b LINE CR1 -207 275 186 6 1384 242 204 0 0 chr3 104760257 104760306 -54839477 + L2b LINE L2 3305 3353 -22 6 1384 196 113 37 19 chr3 104760460 104760514 -54839269 + (TTTG)n Simple_repeat Simple_repeat 2 56 0 6 1384 629 128 0 292 chr3 104760516 104760725 -54839058 - B1_Mur3 SINE Alu 0 149 2 6 1384 629 199 41 34 chr3 104760889 104761035 -54838748 + B1_Mur2 SINE Alu 1 147 -2 6 1384 186 324 0 0 chr3 104761438 104761506 -54838277 + MIR SINE MIR 99 166 -96 6 1384 300 53 0 0 chr3 104762282 104762320 -54837463 + (TC)n Simple_repeat Simple_repeat 2 39 0 6 1384 204 40 0 0 chr3 104762346 104762371 -54837412 + (TC)n Simple_repeat Simple_repeat 2 26 0 6 1384 450 82 10 58 chr3 104762397 104762501 -54837282 + (TC)n Simple_repeat Simple_repeat 2 100 0 6 1384 1128 53 13 0 chr3 104762507 104762658 -54837125 - B2_Mm2 SINE B2 -41 154 2 6 1384 21 0 0 0 chr3 104764692 104764713 -54835070 + GC_rich Low_complexity Low_complexity 1 21 0 6 1384 477 0 0 0 chr3 104766166 104766219 -54833564 + (CA)n Simple_repeat Simple_repeat 2 54 0 6 1384 230 221 14 42 chr3 104766223 104766294 -54833489 - L2a LINE L2 -90 3336 3268 6 1384 243 0 0 0 chr3 104767269 104767296 -54832487 + (TTCTCC)n Simple_repeat Simple_repeat 1 27 0 6 1384 218 81 0 26 chr3 104767565 104767603 -54832180 + (CCCCCA)n Simple_repeat Simple_repeat 5 41 0 6 1384 324 64 0 0 chr3 104769394 104769441 -54830342 + (CAGA)n Simple_repeat Simple_repeat 2 48 0 6 1384 192 162 0 0 chr3 104769685 104769722 -54830061 + MIR SINE MIR 96 132 -76 6 1384 840 39 0 0 chr3 104770083 104770187 -54829596 + (TG)n Simple_repeat Simple_repeat 2 105 0 6 1384 189 0 0 0 chr3 104770272 104770293 -54829490 + (A)n Simple_repeat Simple_repeat 1 21 0 6 1384 226 206 141 64 chr3 104771283 104771361 -54828422 - Charlie1b DNA MER1_type -5 518 435 6 1384 1212 247 55 30 chr3 104771366 104771763 -54828020 + L1MC3 LINE L1 6862 7268 -517 6 1384 772 280 161 13 chr3 104771828 104772212 -54827571 + L1MC1 LINE L1 5513 5953 -380 6 1384 474 65 0 0 chr3 104772310 104772372 -54827411 + (TCTA)n Simple_repeat Simple_repeat 4 65 0 6 1384 453 294 0 0 chr3 104772372 104772481 -54827302 - PB1D10 SINE Alu -8 109 1 6 1384 365 259 49 0 chr3 104772652 104772733 -54827050 + RSINE1 SINE B4 76 160 -5 6 1384 512 68 14 0 chr3 104772737 104772810 -54826973 + (TAGA)n Simple_repeat Simple_repeat 3 76 0 6 1384 452 239 71 110 chr3 104772839 104772994 -54826789 + B1_Mur3 SINE Alu 1 149 0 6 1384 551 210 67 0 chr3 104773014 104773133 -54826650 + ID_B1 SINE B4 78 204 -20 6 1384 3861 121 5 14 chr3 104773138 104773707 -54826076 + RLTR12A LTR ERVK 1 564 -4 6 1384 893 95 63 35 chr3 104775078 104775220 -54824563 + B1_Mus2 SINE Alu 2 147 0 6 1384 8875 244 44 46 chr3 104775243 104776510 -54823273 + MYSERV6-int LTR ERVK 480 1802 -7157 6 1384 1462 68 11 0 chr3 104776510 104776700 -54823083 - B2_Mm1t SINE B2 0 193 2 7 1384 8875 244 44 46 chr3 104776700 104776824 -54822959 + MYSERV6-int LTR ERVK 1803 1913 -7046 6 1384 270 0 0 0 chr3 104776824 104776854 -54822929 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 7 1384 8875 244 44 46 chr3 104776854 104777246 -54822537 + MYSERV6-int LTR ERVK 1914 2277 -6682 6 1384 1446 93 5 0 chr3 104777246 104777440 -54822343 + B2_Mm2 SINE B2 1 195 0 7 1384 8875 244 44 46 chr3 104777440 104777604 -54822179 + MYSERV6-int LTR ERVK 2278 2427 -6532 6 1384 523 15 0 0 chr3 104777604 104777669 -54822114 - L1Md_T LINE L1 -1 6581 6517 7 1384 5805 211 18 51 chr3 104777669 104777925 -54821858 + MYSERV6-int LTR ERVK 2428 2677 -6282 6 1384 372 43 0 0 chr3 104777925 104777971 -54821812 + (CCAA)n Simple_repeat Simple_repeat 2 47 0 7 1384 5805 211 18 51 chr3 104777971 104778455 -54821328 + MYSERV6-int LTR ERVK 2678 3167 -5792 6 1384 2240 117 45 8 chr3 104778469 104778823 -54820960 - IAPLTR1_Mm LTR ERVK 0 367 1 7 1384 8194 55 11 15 chr3 104778825 104779854 -54819929 - IAPEz-int LTR ERVK -2 6479 5455 7 1384 14398 42 117 18 chr3 104779854 104781953 -54817830 - IAPEz-int LTR ERVK -4168 2313 8 7 1384 2240 117 45 8 chr3 104781953 104782307 -54817476 - IAPLTR1_Mm LTR ERVK 0 367 1 7 1384 7168 184 27 21 chr3 104782307 104783817 -54815966 + MYSERV6-int LTR ERVK 2672 4615 -4344 6 1384 199 277 76 59 chr3 104783817 104783936 -54815847 - L3 LINE CR1 -287 4202 4082 7 1384 658 146 71 93 chr3 104783945 104784083 -54815700 + MYSERV6-int LTR ERVK 319 448 -1878 6 1384 198 0 0 0 chr3 104784083 104784105 -54815678 + (CA)n Simple_repeat Simple_repeat 2 23 0 7 1384 180 0 0 0 chr3 104784109 104784129 -54815654 + (TA)n Simple_repeat Simple_repeat 2 21 0 7 1384 658 146 71 93 chr3 104784129 104784167 -54815616 + MYSERV6-int LTR ERVK 449 496 -1830 6 1384 3268 201 78 83 chr3 104784182 104784402 -54815381 + MYSERV-int LTR ERVK 5592 5782 -768 7 1384 874 76 17 8 chr3 104784402 104784521 -54815262 - PB1D9 SINE Alu 0 120 1 7 1384 815 142 103 43 chr3 104784530 104784714 -54815069 - B2_Mm2 SINE B2 0 195 1 7 1384 3268 201 78 83 chr3 104784714 104785433 -54814350 + MYSERV-int LTR ERVK 5786 6536 -14 7 1384 3361 133 25 15 chr3 104785434 104785960 -54813823 + RLTR12A LTR ERVK 1 531 -37 7 1384 797 137 8 0 chr3 104785953 104786077 -54813706 + B1_Mur3 SINE Alu 25 149 0 7 1384 340 310 42 77 chr3 104785954 104786122 -54813661 + B4A SINE B4 111 272 -20 7 1384 495 0 0 0 chr3 104786831 104786886 -54812897 + (CATA)n Simple_repeat Simple_repeat 2 56 0 7 1384 555 16 0 0 chr3 104786886 104786950 -54812833 + (CAAG)n Simple_repeat Simple_repeat 2 65 0 7 1384 486 49 0 0 chr3 104787168 104787229 -54812554 + (TCTA)n Simple_repeat Simple_repeat 1 61 0 7 1384 314 227 0 0 chr3 104787250 104787316 -54812467 - ID4 SINE ID -9 74 9 7 1384 639 199 107 0 chr3 104787366 104787497 -54812286 - B1_Mur4 SINE Alu -3 147 3 7 1384 180 0 0 0 chr3 104787513 104787533 -54812250 + (TA)n Simple_repeat Simple_repeat 2 21 0 7 1384 1059 138 37 5 chr3 104787548 104787737 -54812046 + Lx5 LINE L1 6856 7050 0 7 1384 570 29 0 0 chr3 104787750 104787818 -54811965 + (TG)n Simple_repeat Simple_repeat 1 68 0 7 1384 526 291 22 22 chr3 104787826 104787963 -54811820 - B3A SINE B2 -48 150 14 7 1384 323 221 77 111 chr3 104787976 104788093 -54811690 + B3A SINE B2 86 198 0 7 1384 1940 187 71 55 chr3 104788283 104788609 -54811174 - RMER1C Other Other -8 1334 1000 7 1384 231 61 0 0 chr3 104788609 104788642 -54811141 + (GGGTG)n Simple_repeat Simple_repeat 4 36 0 7 1384 1940 187 71 55 chr3 104788642 104788767 -54811016 - RMER1C Other Other -343 999 876 7 1384 333 117 0 77 chr3 104788755 104788820 -54810963 + RMER1C Other Other 781 840 -502 7 1384 703 196 0 0 chr3 104788829 104788941 -54810842 - B1_Mus2 SINE Alu -34 113 2 7 1384 556 129 184 10 chr3 104789109 104789230 -54810553 - B1_Mm SINE Alu 0 149 1 7 1384 312 180 82 0 chr3 104789180 104789241 -54810542 - B4 SINE B4 -157 135 70 7 1384 867 90 0 0 chr3 104789463 104789585 -54810198 + (TTTC)n Simple_repeat Simple_repeat 3 124 0 7 1384 956 64 0 8 chr3 104789590 104789716 -54810067 - B1_Mm SINE Alu -22 125 1 7 1384 316 237 206 7 chr3 104789769 104789905 -54809878 - Lx9 LINE L1 -1721 5923 5761 7 1384 1788 219 104 19 chr3 104789914 104790290 -54809493 - MTD LTR MaLR 0 419 12 7 1384 922 307 60 11 chr3 104790306 104790494 -54809289 - L1_Mur3 LINE L1 -126 5754 5562 7 1384 432 0 0 0 chr3 104790494 104790542 -54809241 + (GA)n Simple_repeat Simple_repeat 1 48 0 7 1384 922 307 60 11 chr3 104790542 104790702 -54809081 - L1_Mur3 LINE L1 -319 5561 5389 7 1384 546 286 66 5 chr3 104790907 104791104 -54808679 - B4A SINE B4 -8 284 76 7 1384 318 232 10 21 chr3 104791150 104791247 -54808536 - Lx9 LINE L1 -608 5239 5144 7 1384 4520 79 23 35 chr3 104791255 104791910 -54807873 - Lx LINE L1 -1 6653 6007 7 1384 210 154 0 0 chr3 104791910 104791949 -54807834 + T-rich Low_complexity Low_complexity 5 43 0 7 1384 840 28 19 0 chr3 104791949 104792057 -54807726 - B1_Mm SINE Alu 0 147 38 7 1384 321 213 66 109 chr3 104791990 104792127 -54807656 - RLTR25B LTR ERVK -519 509 379 7 1384 5548 121 35 3 chr3 104792127 104793082 -54806701 - L1_Mus4 LINE L1 -702 5934 4956 7 1384 22 0 0 0 chr3 104793100 104793122 -54806661 + AT_rich Low_complexity Low_complexity 1 22 0 7 1384 1169 283 61 19 chr3 104793133 104793609 -54806174 - L1_Mur3 LINE L1 -737 5143 4648 7 1384 561 313 75 0 chr3 104793625 104793772 -54806011 - RSINE1 SINE B4 -1 164 7 7 1384 267 270 275 39 chr3 104793817 104794075 -54805708 - Arthur1 DNA Tip100 -3612 335 17 7 1384 883 132 0 23 chr3 104794428 104794560 -54805223 - B1_Mur4 SINE Alu 0 150 22 7 1384 331 169 69 14 chr3 104794564 104794636 -54805147 - B1_Mur1 SINE Alu 0 149 74 7 1384 214 278 184 10 chr3 104794663 104794761 -54805022 + L2a LINE L2 3280 3394 -32 7 1384 337 230 194 29 chr3 104794845 104794948 -54804835 + PB1D7 SINE Alu 1 120 0 7 1384 526 243 0 101 chr3 104794950 104795069 -54804714 + PB1D7 SINE Alu 1 107 -13 7 1384 186 71 0 0 chr3 104795071 104795099 -54804684 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 7 1384 232 30 30 0 chr3 104795099 104795132 -54804651 + BC1_Mm scRNA scRNA 2 35 -117 7 1384 463 202 44 11 chr3 104795406 104795496 -54804287 + PB1D7 SINE Alu 17 109 -11 7 1384 242 314 0 82 chr3 104795492 104795565 -54804218 + ID4_ SINE ID 17 83 0 7 1384 345 47 0 0 chr3 104796446 104796489 -54803294 + (TG)n Simple_repeat Simple_repeat 1 43 0 7 1384 293 197 0 43 chr3 104796575 104796654 -54803129 - PB1D10 SINE Alu -1 148 58 7 1384 247 289 158 0 chr3 104797726 104797840 -54801943 + MIR3 SINE MIR 65 196 -12 7 1384 342 0 0 0 chr3 104797917 104797955 -54801828 + (TAA)n Simple_repeat Simple_repeat 2 39 0 7 1384 824 152 0 21 chr3 104798066 104798207 -54801576 - B1_Mus2 SINE Alu -1 146 9 7 1384 468 241 22 103 chr3 104798071 104798256 -54801527 - ID_B1 SINE B4 -4 220 51 7 1384 215 350 24 24 chr3 104798344 104798426 -54801357 + ID4_ SINE ID 2 83 0 7 1384 292 239 14 14 chr3 104798889 104798961 -54800822 - ID4 SINE ID -10 73 2 7 1384 278 245 0 0 chr3 104798968 104799021 -54800762 - LTR16A LTR ERVL -183 268 216 7 1384 214 241 55 18 chr3 104799047 104799102 -54800681 + B1F SINE Alu 24 80 -69 7 1384 239 275 12 59 chr3 104799313 104799398 -54800385 - ID4_ SINE ID 0 83 3 7 1384 690 164 146 30 chr3 104799450 104799614 -54800169 + B3A SINE B2 1 183 -15 7 1384 583 87 219 9 chr3 104799657 104799762 -54800021 + B1_Mus2 SINE Alu 21 147 0 7 1384 352 240 131 30 chr3 104800759 104800858 -54798925 - PB1D10 SINE Alu -1 116 8 7 1384 246 260 0 20 chr3 104801286 104801337 -54798446 - tRNA-Ala-GCY_ tRNA tRNA -7 68 19 7 1384 791 160 8 8 chr3 104801392 104801518 -54798265 - B3 SINE B2 -87 129 4 7 1384 303 200 31 77 chr3 104801539 104801604 -54798179 - B1F1 SINE Alu -9 140 79 7 1384 287 284 100 33 chr3 104801808 104801928 -54797855 - B3A SINE B2 0 198 71 7 1384 518 285 22 8 chr3 104801930 104802071 -54797712 - ID_B1 SINE B4 -53 239 95 7 1384 217 200 273 0 chr3 104802302 104802357 -54797426 + B1_Mur1 SINE Alu 67 136 -13 7 1384 738 271 34 10 chr3 104802373 104802582 -54797201 - B3 SINE B2 0 216 3 7 1384 720 111 0 0 chr3 104803411 104803519 -54796264 + (GA)n Simple_repeat Simple_repeat 1 108 0 7 1384 1803 244 154 26 chr3 104803965 104804588 -54795195 + Lx8 LINE L1 6582 7284 -189 7 1384 291 330 28 0 chr3 104809225 104809334 -54790449 - Tigger14a DNA MER2_type -161 163 52 7 1384 2999 133 77 10 chr3 104809844 104810339 -54789444 - RLTR11A LTR ERVK 0 528 1 7 1384 620 251 45 22 chr3 104810497 104810676 -54789107 - B3A SINE B2 -15 183 1 7 1384 257 0 30 0 chr3 104810686 104810719 -54789064 + (TTTG)n Simple_repeat Simple_repeat 1 34 0 7 1384 638 271 0 41 chr3 104811816 104811962 -54787821 + B1F2 SINE Alu 4 143 -6 7 1384 22 35 0 0 chr3 104811962 104811991 -54787792 + AT_rich Low_complexity Low_complexity 1 29 0 7 1384 845 234 31 10 chr3 104812166 104812360 -54787423 - B3A SINE B2 0 198 1 7 1384 279 0 0 0 chr3 104812662 104812693 -54787090 + (TG)n Simple_repeat Simple_repeat 1 31 0 7 1384 268 341 46 38 chr3 104813134 104813265 -54786518 - Charlie4z DNA MER1_type -14 153 22 7 1384 253 340 146 21 chr3 104814475 104814667 -54785116 - MIR SINE MIR -19 243 28 7 1384 198 0 0 0 chr3 104814673 104814695 -54785088 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 7 1384 1074 72 7 0 chr3 104814695 104814833 -54784950 - B1_Mus1 SINE Alu -9 139 1 7 1384 609 209 0 9 chr3 104815357 104815473 -54784310 + PB1D9 SINE Alu 2 116 -4 7 1384 331 309 27 9 chr3 104815495 104815606 -54784177 + PB1D10 SINE Alu 2 114 -3 7 1384 404 295 64 14 chr3 104816533 104816674 -54783109 - MLT1F1 LTR MaLR 0 569 422 7 1384 233 214 50 125 chr3 104817248 104817328 -54782455 + PB1D10 SINE Alu 34 107 -10 7 1384 1102 224 9 14 chr3 104817495 104817708 -54782075 + ID_B1 SINE B4 9 220 -4 7 1384 521 301 44 0 chr3 104817736 104817849 -54781934 + RSINE1 SINE B4 12 129 -36 7 1384 287 240 83 37 chr3 104818346 104818454 -54781329 - L1MC1 LINE L1 -25 6308 6196 7 1384 836 158 14 7 chr3 104818549 104818689 -54781094 + B1_Mus2 SINE Alu 1 141 -6 7 1384 753 110 0 0 chr3 104818693 104818811 -54780972 + (CCAA)n Simple_repeat Simple_repeat 2 119 0 7 1384 207 179 0 0 chr3 104818818 104818857 -54780926 + A-rich Low_complexity Low_complexity 2 40 0 7 1384 573 224 0 39 chr3 104818927 104819057 -54780726 + B4A SINE B4 2 126 -166 8 1384 291 190 0 0 chr3 104819059 104819117 -54780666 + (TG)n Simple_repeat Simple_repeat 1 58 0 8 1384 463 303 149 28 chr3 104819234 104819590 -54780193 - L1ME2 LINE L1 -70 6094 5696 8 1384 704 230 0 54 chr3 104819897 104820044 -54779739 - RSINE1 SINE B4 -25 140 2 8 1384 243 257 92 37 chr3 104820159 104820268 -54779515 - PB1D10 SINE Alu -1 116 2 8 1384 607 202 0 52 chr3 104821410 104821525 -54778258 + RSINE1 SINE B4 16 124 -41 8 1384 425 254 18 0 chr3 104821602 104821712 -54778071 + PB1D9 SINE Alu 4 115 -5 8 1384 568 282 36 26 chr3 104821933 104822126 -54777657 - B3A SINE B2 -1 197 3 8 1384 36 0 0 0 chr3 104822178 104822214 -54777569 + AT_rich Low_complexity Low_complexity 1 36 0 8 1384 729 191 29 0 chr3 104822335 104822471 -54777312 + B1_Mur3 SINE Alu 1 140 -9 8 1384 291 100 0 0 chr3 104822487 104822527 -54777256 + (GA)n Simple_repeat Simple_repeat 2 41 0 8 1384 807 110 30 18 chr3 104822527 104822693 -54777090 + GA-rich Low_complexity Low_complexity 5 172 0 8 1384 1022 237 10 10 chr3 104823080 104823287 -54776496 + B3 SINE B2 9 215 -1 8 1384 251 114 0 22 chr3 104823949 104823994 -54775789 + (CAGA)n Simple_repeat Simple_repeat 4 47 0 8 1384 1310 158 0 24 chr3 104824283 104824490 -54775293 + B3 SINE B2 1 202 -14 8 1384 307 271 35 0 chr3 104825054 104825139 -54774644 + ID_B1 SINE B4 33 120 -104 8 1384 321 281 29 66 chr3 104825413 104825550 -54774233 + B1F SINE Alu 1 132 -17 8 1384 678 233 34 73 chr3 104825717 104825921 -54773862 - B3A SINE B2 -2 196 1 8 1384 352 294 24 128 chr3 104825967 104826131 -54773652 - RSINE1 SINE B4 -6 159 13 8 1384 1662 147 71 95 chr3 104827187 104827287 -54772496 - RLTR11A LTR ERVK 0 528 454 8 1384 1113 70 28 0 chr3 104827287 104827430 -54772353 - B1_Mus2 SINE Alu 0 147 1 8 1384 1662 147 71 95 chr3 104827430 104827697 -54772086 - RLTR11A LTR ERVK -75 453 170 8 1384 367 270 44 26 chr3 104827717 104827831 -54771952 + RSINE1 SINE B4 44 159 -6 8 1384 263 95 48 0 chr3 104827877 104827919 -54771864 + B3A SINE B2 1 44 -154 8 1384 959 155 0 37 chr3 104827917 104828078 -54771705 - RLTR11A LTR ERVK -371 157 3 8 1384 4183 57 2 0 chr3 104828173 104828683 -54771100 - L1Md_F2 LINE L1 0 6582 6072 8 1384 252 232 57 14 chr3 104828712 104828782 -54771001 + PB1D10 SINE Alu 38 110 -7 8 1384 561 189 69 43 chr3 104828863 104828968 -54770815 + PB1D9 SINE Alu 1 112 -8 8 1384 180 0 0 0 chr3 104828968 104828988 -54770795 + (CAA)n Simple_repeat Simple_repeat 2 21 0 8 1384 225 132 0 0 chr3 104829024 104829062 -54770721 + (A)n Simple_repeat Simple_repeat 1 38 0 8 1384 248 244 183 8 chr3 104829141 104829261 -54770522 + L1ME1 LINE L1 5886 6026 -153 8 1384 392 174 98 0 chr3 104829384 104829476 -54770307 + PB1D10 SINE Alu 17 117 0 8 1384 343 251 59 13 chr3 104830783 104830894 -54768889 + PB1D9 SINE Alu 1 120 -7 8 1384 622 241 51 41 chr3 104830920 104831115 -54768668 + B3A SINE B2 2 198 0 8 1384 1431 67 0 3 chr3 104831306 104832889 -54766894 + (CCAA)n Simple_repeat Simple_repeat 1 1578 0 8 1384 1473 39 0 0 chr3 104832905 104833085 -54766698 + (CCAA)n Simple_repeat Simple_repeat 1 180 0 8 1384 343 167 0 32 chr3 104833178 104833240 -54766543 + B1_Mur4 SINE Alu 1 60 -90 8 1384 308 238 25 0 chr3 104833240 104833320 -54766463 + (CAGG)n Simple_repeat Simple_repeat 3 84 0 8 1384 246 256 12 47 chr3 104833320 104833406 -54766377 + RLTR25B LTR ERVK 427 509 -519 8 1384 643 105 0 79 chr3 104833338 104833452 -54766331 + B1_Mur4 SINE Alu 43 147 -3 8 1384 501 212 71 0 chr3 104833455 104833568 -54766215 + B3 SINE B2 96 216 0 8 1384 222 352 28 0 chr3 104833999 104834070 -54765713 + ID SINE ID 1 73 -151 8 1384 190 264 151 14 chr3 104834083 104834156 -54765627 - MIRm SINE MIR -9 267 185 8 1384 1262 76 15 61 chr3 104834474 104834670 -54765113 + B2_Mm1t SINE B2 2 188 -5 8 1384 729 104 176 0 chr3 104835059 104835184 -54764599 - B1_Mus2 SINE Alu 0 147 1 8 1384 666 239 45 0 chr3 104835328 104835462 -54764321 - B1_Mur1 SINE Alu 0 149 10 8 1384 398 305 15 66 chr3 104835345 104835482 -54764301 - MT2B LTR ERVL -319 282 153 8 1384 207 0 0 0 chr3 104835542 104835565 -54764218 + (TC)n Simple_repeat Simple_repeat 1 23 0 8 1384 599 272 29 23 chr3 104836288 104836461 -54763322 - B3A SINE B2 -24 174 1 8 1384 406 289 99 0 chr3 104836461 104836581 -54763202 - B1F SINE Alu -17 132 1 8 1384 308 287 192 11 chr3 104836672 104836798 -54762985 - B1_Mur1 SINE Alu 0 149 2 8 1384 455 242 258 55 chr3 104836965 104837254 -54762529 - L1MA4 LINE L1 -231 5925 5534 8 1384 310 291 0 60 chr3 104837375 104837459 -54762324 - PB1D10 SINE Alu -38 79 1 8 1384 1498 279 164 72 chr3 104837476 104837653 -54762130 - L1MA4 LINE L1 -452 5428 5236 8 1384 365 298 11 96 chr3 104837653 104837831 -54761952 - RSINE1 SINE B4 0 165 3 8 1384 1498 279 164 72 chr3 104837831 104838755 -54761028 - L1MA4 LINE L1 -645 5235 4225 8 1384 437 254 8 41 chr3 104839505 104839628 -54760155 - PB1D7 SINE Alu -1 119 1 8 1384 233 278 33 122 chr3 104839846 104839936 -54759847 - B3A SINE B2 -6 192 111 8 1384 415 299 19 0 chr3 104839956 104840063 -54759720 - B3A SINE B2 -62 136 28 8 1384 186 227 0 0 chr3 104840063 104840107 -54759676 + CT-rich Low_complexity Low_complexity 2 45 0 8 1384 977 115 7 0 chr3 104840126 104840265 -54759518 - B1_Mur3 SINE Alu -9 140 1 8 1384 231 135 27 0 chr3 104840273 104840310 -54759473 - B3A SINE B2 -159 39 2 8 1384 187 319 0 122 chr3 104840790 104840897 -54758886 + MIRm SINE MIR 93 186 -90 8 1384 899 280 42 35 chr3 104841118 104841403 -54758380 + B4A SINE B4 2 288 -4 8 1384 208 139 0 27 chr3 104841414 104841451 -54758332 + (CA)n Simple_repeat Simple_repeat 1 36 0 8 1384 229 227 186 57 chr3 104842138 104842208 -54757575 - PB1D7 SINE Alu 0 120 42 8 1384 702 139 78 0 chr3 104843351 104843466 -54756317 - B1_Mur4 SINE Alu -23 127 4 8 1384 406 266 43 52 chr3 104843363 104843478 -54756305 - B4 SINE B4 -98 194 81 8 1384 279 0 0 0 chr3 104843495 104843526 -54756257 + (CA)n Simple_repeat Simple_repeat 2 32 0 8 1384 366 198 20 119 chr3 104843738 104843847 -54755936 - PB1D9 SINE Alu -22 127 34 8 1384 398 292 26 9 chr3 104843858 104843972 -54755811 - PB1D10 SINE Alu 0 117 2 8 1384 453 36 0 0 chr3 104844310 104844365 -54755418 + (CAGGG)n Simple_repeat Simple_repeat 2 56 0 8 1384 593 266 6 48 chr3 104844821 104844987 -54754796 + ID_B1 SINE B4 64 222 -2 8 1384 270 233 95 14 chr3 104845358 104845432 -54754351 + PB1D10 SINE Alu 1 80 -37 8 1384 353 207 40 216 chr3 104845632 104845739 -54754044 + MLT1B LTR MaLR 5 89 -301 8 1384 467 183 12 0 chr3 104845739 104845821 -54753962 - ID2 SINE ID 0 83 1 8 1384 353 207 40 216 chr3 104845821 104845861 -54753922 + MLT1B LTR MaLR 90 126 -264 8 1384 537 260 148 6 chr3 104845863 104846096 -54753687 + Lx7 LINE L1 6884 7161 -312 8 1384 261 229 114 0 chr3 104846226 104846296 -54753487 + Lx7 LINE L1 7261 7338 -358 8 1384 231 270 100 41 chr3 104846266 104846436 -54753347 + Lx7 LINE L1 7500 7679 -17 8 1384 278 191 119 19 chr3 104846438 104846541 -54753242 + MLT1B LTR MaLR 106 225 -242 8 1384 334 202 182 0 chr3 104846671 104846770 -54753013 - B1F1 SINE Alu 0 149 33 8 1384 282 145 198 88 chr3 104846815 104846906 -54752877 - B2_Mm2 SINE B2 -20 175 75 8 1384 218 125 0 0 chr3 104846907 104846939 -54752844 - B3 SINE B2 -184 32 1 8 1384 461 290 148 15 chr3 104847567 104847763 -54752020 - MIR SINE MIR -10 252 31 8 1384 206 208 104 0 chr3 104847814 104847862 -54751921 - MIR3 SINE MIR -28 180 128 8 1384 279 114 0 0 chr3 104847946 104847990 -54751793 + (TG)n Simple_repeat Simple_repeat 1 44 0 8 1384 285 312 59 59 chr3 104847993 104848146 -54751637 - RSINE1 SINE B4 -11 154 2 8 1384 502 237 0 17 chr3 104848405 104848525 -54751258 + PB1D7 SINE Alu 3 120 0 8 1384 1179 178 27 14 chr3 104849084 104849306 -54750477 - URR1B DNA MER1_type 0 225 1 8 1384 358 311 56 60 chr3 104849306 104849335 -54750448 + CYRA11_Mm Unknown Y-chromosome 393 420 -197 8 1384 485 216 69 41 chr3 104850274 104850419 -54749364 + B1F SINE Alu 1 149 0 8 1384 871 244 60 32 chr3 104850537 104850821 -54748962 - B4A SINE B4 0 292 1 8 1384 378 0 0 0 chr3 104851374 104851416 -54748367 + (CA)n Simple_repeat Simple_repeat 2 43 0 8 1384 792 196 109 16 chr3 104851528 104851720 -54748063 - B3 SINE B2 -5 211 2 8 1384 2108 35 1 0 chr3 104852485 104852739 -54747044 + L1Md_F2 LINE L1 5720 6011 -571 8 1384 1813 189 37 16 chr3 104852739 104853120 -54746663 - MTD LTR MaLR -30 389 1 8 1384 303 140 0 0 chr3 104853586 104853636 -54746147 + (CA)n Simple_repeat Simple_repeat 2 51 0 8 1384 351 65 0 0 chr3 104856287 104856333 -54743450 + (TC)n Simple_repeat Simple_repeat 2 47 0 8 1384 261 0 0 0 chr3 104856868 104856897 -54742886 + (CA)n Simple_repeat Simple_repeat 2 30 0 8 1384 843 137 260 11 chr3 104856914 104857091 -54742692 + URR1B DNA MER1_type 5 225 0 8 1384 235 45 44 22 chr3 104857422 104857467 -54742316 + (TGGGGG)n Simple_repeat Simple_repeat 2 47 0 8 1385 239 348 11 33 chr3 104857647 104857739 -54742044 + PB1D10 SINE Alu 2 91 -26 8 1385 398 274 33 25 chr3 104857659 104857779 -54742004 + ID_B1 SINE B4 96 216 -8 8 1385 794 252 60 40 chr3 104858691 104858993 -54740790 - MLT1C LTR MaLR -18 449 142 8 1385 242 241 0 0 chr3 104859006 104859064 -54740719 - B1F SINE Alu -1 148 91 8 1385 323 197 30 0 chr3 104859098 104859164 -54740619 - MLT1C LTR MaLR -348 119 52 8 1385 351 96 0 0 chr3 104859246 104859298 -54740485 + (TG)n Simple_repeat Simple_repeat 1 52 0 8 1385 219 298 147 39 chr3 104859350 104859479 -54740304 - MIRb SINE MIR -11 257 115 8 1385 466 300 33 0 chr3 104859689 104859809 -54739974 + RSINE1 SINE B4 2 125 -40 8 1385 792 192 53 58 chr3 104859806 104859825 -54739958 - B2_Mm2 SINE B2 -7 188 167 8 1385 4944 50 0 10 chr3 104859825 104860446 -54739337 + L1Md_F2 LINE L1 5968 6582 0 9 1385 865 136 25 14 chr3 104860446 104860614 -54739169 - B3 SINE B2 -29 166 2 8 1385 1629 27 0 21 chr3 104860685 104860877 -54738906 - B2_Mm1a SINE B2 -4 189 2 9 1385 769 204 72 38 chr3 104860895 104861104 -54738679 + B3 SINE B2 1 216 0 9 1385 269 51 26 0 chr3 104861188 104861227 -54738556 + (AGGGGG)n Simple_repeat Simple_repeat 2 41 0 9 1385 260 304 109 0 chr3 104861445 104861537 -54738246 + MIRc SINE MIR 117 218 -50 9 1385 398 285 48 85 chr3 104862244 104862409 -54737374 - MIRb SINE MIR -18 250 92 9 1385 807 159 23 0 chr3 104863164 104863296 -54736487 - B1_Mur1 SINE Alu -3 146 12 9 1385 452 178 238 0 chr3 104863372 104863473 -54736310 - B1_Mm SINE Alu 0 147 23 9 1385 378 0 0 0 chr3 104863483 104863525 -54736258 + (CA)n Simple_repeat Simple_repeat 2 43 0 9 1385 600 253 192 25 chr3 104863542 104863781 -54736002 - B4 SINE B4 -12 280 2 9 1385 543 319 41 27 chr3 104864618 104864837 -54734946 - MLT1K LTR MaLR -5 590 369 9 1385 258 32 0 0 chr3 104864955 104864986 -54734797 + (TCC)n Simple_repeat Simple_repeat 3 33 0 9 1385 509 261 41 12 chr3 104864993 104865125 -54734658 - B1F SINE Alu -9 140 10 9 1385 398 309 6 63 chr3 104865125 104865152 -54734631 - ID_B1 SINE B4 -9 215 66 9 1385 229 231 38 13 chr3 104865290 104865369 -54734414 + (TCTA)n Simple_repeat Simple_repeat 3 83 0 9 1385 921 282 91 19 chr3 104865795 104865918 -54733865 - MTEa LTR MaLR -37 342 208 9 1385 1808 135 124 12 chr3 104865918 104866248 -54733535 + ORR1B2 LTR MaLR 1 367 0 9 1385 921 282 91 19 chr3 104866248 104866442 -54733341 - MTEa LTR MaLR -172 207 3 9 1385 3088 274 91 57 chr3 104866449 104866581 -54733202 - MTEa-int LTR MaLR -24 1556 1421 9 1385 5166 102 16 25 chr3 104866581 104866608 -54733175 - RMER19A LTR ERVK 0 737 721 9 1385 1098 80 99 44 chr3 104866608 104866790 -54732993 - B2_Mm2 SINE B2 -2 193 2 9 1385 5166 102 16 25 chr3 104866790 104867506 -54732277 - RMER19A LTR ERVK -17 720 1 9 1385 3088 274 91 57 chr3 104867506 104868428 -54731355 - MTEa-int LTR MaLR -160 1420 466 9 1385 931 223 9 19 chr3 104868436 104868651 -54731132 - B3 SINE B2 -2 214 2 9 1385 2757 156 119 23 chr3 104868669 104869188 -54730595 - RMER4B LTR ERVK 0 585 17 9 1385 1790 265 23 25 chr3 104869274 104869751 -54730032 - MTEa-int LTR MaLR -1104 476 1 9 1385 987 224 0 6 chr3 104869847 104869861 -54729922 - B3 SINE B2 -37 179 166 9 1385 273 29 0 0 chr3 104869861 104869895 -54729888 + (TATG)n Simple_repeat Simple_repeat 2 35 0 9 1385 987 224 0 6 chr3 104869895 104870060 -54729723 - B3 SINE B2 -51 165 1 9 1385 613 241 105 35 chr3 104870060 104870225 -54729558 - MTEa LTR MaLR -200 179 3 9 1385 426 319 93 28 chr3 104870229 104870445 -54729338 + MIR SINE MIR 7 236 -26 9 1385 300 283 40 0 chr3 104870469 104870568 -54729215 - MER94 DNA AcHobo -27 107 5 9 1385 616 242 217 0 chr3 104871565 104871722 -54728061 + B3 SINE B2 1 191 -25 9 1385 536 279 96 66 chr3 104871769 104871919 -54727864 - L1MEc LINE L1 -5414 986 822 9 1385 1599 222 55 6 chr3 104871919 104872281 -54727502 - ORR1C2 LTR MaLR 0 384 5 9 1385 536 279 96 66 chr3 104872281 104872336 -54727447 - L1MEc LINE L1 -5579 821 774 9 1385 1604 0 56 0 chr3 104872336 104872515 -54727268 - B2_Mm1a SINE B2 -3 190 2 9 1385 536 279 96 66 chr3 104872515 104872715 -54727068 - L1MEc LINE L1 -5627 773 568 9 1385 1379 254 163 49 chr3 104872892 104873082 -54726701 - Lx9 LINE L1 -1 7643 7431 9 1385 504 0 0 0 chr3 104873082 104873138 -54726645 + (CA)n Simple_repeat Simple_repeat 1 56 0 9 1385 1379 254 163 49 chr3 104873138 104873560 -54726223 - Lx9 LINE L1 -214 7430 6962 9 1385 1392 194 258 9 chr3 104873653 104874079 -54725704 + RMER21A LTR ERV1 153 684 -263 9 1385 240 159 16 16 chr3 104874187 104874251 -54725532 - B2_Mm2 SINE B2 -1 194 131 9 1385 1052 144 29 0 chr3 104874291 104874464 -54725319 - B2_Mm1t SINE B2 -14 179 2 9 1385 243 65 0 0 chr3 104874864 104874895 -54724888 - U6 snRNA snRNA -75 32 2 9 1385 430 259 55 31 chr3 104876017 104876180 -54723603 - L1MEc LINE L1 -6198 202 36 9 1385 696 320 127 39 chr3 104876181 104876857 -54722926 - L1M5 LINE L1 -1748 4398 3663 9 1385 1462 68 5 25 chr3 104876899 104877096 -54722687 - B2_Mm2 SINE B2 -2 193 1 9 1385 288 261 49 35 chr3 104877252 104877395 -54722388 - L1M5 LINE L1 -2634 3512 3368 9 1385 1162 95 53 6 chr3 104877415 104877584 -54722199 - B2_Mm2 SINE B2 -18 177 1 9 1385 259 340 63 79 chr3 104877849 104878101 -54721682 - MLT1I LTR MaLR -124 287 40 9 1385 1041 235 14 0 chr3 104878225 104878438 -54721345 + B3 SINE B2 1 216 0 9 1385 636 289 16 102 chr3 104878608 104878912 -54720871 + B4A SINE B4 5 282 -10 9 1385 362 236 52 89 chr3 104878912 104879047 -54720736 + LTR41 LTR ERVL 59 188 -570 9 1385 299 238 155 0 chr3 104879178 104879262 -54720521 + PB1D10 SINE Alu 8 104 -16 9 1385 212 302 0 0 chr3 104879258 104879301 -54720482 - ID4 SINE ID -33 50 8 9 1385 246 174 0 0 chr3 104879420 104879466 -54720317 + (CAT)n Simple_repeat Simple_repeat 3 48 0 9 1385 629 229 247 0 chr3 104879471 104879641 -54720142 - B3 SINE B2 -1 215 4 9 1385 194 310 54 40 chr3 104879744 104879892 -54719891 - L2 LINE L2 -2102 1317 1168 9 1385 554 226 0 0 chr3 104879945 104880060 -54719723 - PB1D9 SINE Alu -3 117 3 9 1385 423 0 0 0 chr3 104881848 104881895 -54717888 + (TG)n Simple_repeat Simple_repeat 1 47 0 9 1385 263 93 0 23 chr3 104881895 104881939 -54717844 + (GA)n Simple_repeat Simple_repeat 2 44 0 9 1385 475 212 28 83 chr3 104882003 104882111 -54717672 + RSINE1 SINE B4 3 104 -61 9 1385 236 315 55 0 chr3 104882275 104882348 -54717435 - MIRb SINE MIR -172 96 20 9 1385 477 252 17 9 chr3 104882429 104882545 -54717238 + PB1D10 SINE Alu 1 117 0 9 1385 3483 23 8 0 chr3 104882557 104882950 -54716833 - MTA_Mm LTR MaLR 0 396 1 9 1385 655 243 81 0 chr3 104883064 104883200 -54716583 + B1_Mur2 SINE Alu 3 149 0 9 1385 939 196 70 10 chr3 104883238 104883439 -54716344 + B3 SINE B2 4 216 0 9 1385 270 159 0 0 chr3 104883470 104883514 -54716269 - RMER30 DNA MER1_type -151 51 8 9 1385 1168 58 0 0 chr3 104883532 104883670 -54716113 + B1_Mus1 SINE Alu 1 138 -10 9 1385 199 353 96 19 chr3 104884059 104884163 -54715620 - MIRm SINE MIR 0 276 165 9 1385 516 304 119 43 chr3 104884161 104884536 -54715247 - L2a LINE L2 -251 3175 2760 9 1385 1161 148 35 53 chr3 104884840 104885068 -54714715 + RMER13A LTR ERVK 635 858 -2 9 1385 476 351 37 33 chr3 104885289 104885504 -54714279 - MIRb SINE MIR -15 253 38 9 1385 489 309 104 62 chr3 104885589 104885782 -54714001 - Tigger12A DNA MER2_type -7 784 584 9 1385 288 248 116 31 chr3 104885753 104885882 -54713901 - Tigger12A DNA MER2_type -198 395 256 9 1385 315 191 32 0 chr3 104885893 104885956 -54713827 - ORR1A3-int LTR MaLR -745 1218 1154 9 1385 1170 230 10 47 chr3 104886067 104886364 -54713419 - B4 SINE B4 -6 286 1 9 1385 1782 27 18 9 chr3 104886475 104886698 -54713085 + L1Md_F3 LINE L1 6359 6583 -1 9 1385 183 152 0 0 chr3 104886703 104886749 -54713034 + (CAAA)n Simple_repeat Simple_repeat 4 49 0 9 1385 278 294 59 0 chr3 104886765 104886884 -54712899 - L1M4 LINE L1 -723 5456 5331 9 1385 555 262 49 142 chr3 104886939 104887087 -54712696 - L1M4 LINE L1 -838 5308 5186 9 1385 534 183 54 115 chr3 104887087 104887235 -54712548 - B1_Mus1 SINE Alu -9 139 1 9 1385 555 262 49 142 chr3 104887235 104887557 -54712226 - L1M4 LINE L1 -961 5185 4882 9 1385 2169 218 50 17 chr3 104888176 104888717 -54711066 - L1MB7 LINE L1 -16 6168 5610 9 1385 702 317 43 101 chr3 104888717 104889093 -54710690 + ORR1E LTR MaLR 1 354 -5 9 1385 270 213 184 9 chr3 104889104 104889213 -54710570 - L1MB7 LINE L1 -575 5609 5482 9 1385 629 255 21 0 chr3 104889222 104889363 -54710420 - B1_Mur1 SINE Alu -3 146 3 9 1385 276 30 0 0 chr3 104889448 104889481 -54710302 + (TG)n Simple_repeat Simple_repeat 2 34 0 9 1385 281 211 0 0 chr3 104889482 104889534 -54710249 - RSINE1 SINE B4 -40 125 74 9 1385 707 279 31 20 chr3 104889564 104889893 -54709890 - L1MB7 LINE L1 -734 5440 5111 9 1385 22 0 0 0 chr3 104890090 104890112 -54709671 + AT_rich Low_complexity Low_complexity 1 22 0 9 1385 853 191 85 5 chr3 104890120 104890309 -54709474 - B3 SINE B2 -12 204 1 9 1385 904 294 27 50 chr3 104890315 104890661 -54709122 - ORR1E LTR MaLR -47 327 1 9 1385 290 243 268 9 chr3 104891214 104891326 -54708457 + MIRb SINE MIR 48 188 -80 9 1385 386 202 115 0 chr3 104891343 104891447 -54708336 + PB1D7 SINE Alu 5 120 0 9 1385 216 0 0 0 chr3 104891447 104891471 -54708312 + (A)n Simple_repeat Simple_repeat 1 24 0 9 1385 331 216 44 142 chr3 104892952 104893065 -54706718 + B4A SINE B4 1 102 -190 9 1385 309 257 98 7 chr3 104893535 104893637 -54706146 + RSINE1 SINE B4 78 281 -11 9 1385 452 258 75 0 chr3 104894254 104894374 -54705409 - B1F SINE Alu -3 146 18 9 1385 216 355 119 41 chr3 104894572 104894766 -54705017 - MIR SINE MIR -20 248 40 9 1385 1910 183 62 20 chr3 104894781 104895182 -54704601 + MTD LTR MaLR 2 419 0 9 1385 228 311 105 40 chr3 104895595 104895813 -54703970 - MIRc SINE MIR -34 234 4 9 1385 216 0 0 0 chr3 104896112 104896136 -54703647 + (T)n Simple_repeat Simple_repeat 1 24 0 9 1385 434 236 46 19 chr3 104896582 104896690 -54703093 - Charlie15a DNA MER1_type 0 224 114 9 1385 1057 166 76 20 chr3 104897052 104897249 -54702534 + URR1B DNA MER1_type 17 224 -1 9 1385 317 276 106 106 chr3 104897249 104897316 -54702467 - CYRA11_Mm Unknown Y-chromosome -432 185 119 9 1385 317 338 148 64 chr3 104898949 104899047 -54700736 + LTR81A LTR ERV1? 198 332 -1018 9 1385 327 208 64 13 chr3 104899047 104899125 -54700658 + ID SINE ID 1 82 -142 9 1385 317 338 148 64 chr3 104899125 104899306 -54700477 + LTR81A LTR ERV1? 333 584 -766 9 1385 337 371 189 21 chr3 104899304 104899556 -54700227 + LTR81A LTR ERV1? 687 970 -380 9 1385 621 245 22 0 chr3 104899834 104899973 -54699810 + B1F SINE Alu 1 142 -7 9 1385 267 0 45 23 chr3 104900094 104900138 -54699645 + (CAAAA)n Simple_repeat Simple_repeat 2 46 0 9 1385 857 314 164 3 chr3 104900427 104900817 -54698966 + MLT1F1 LTR MaLR 23 475 -94 9 1385 373 316 120 29 chr3 104900838 104901222 -54698561 + L1MEe LINE L1 48 466 -4388 9 1385 474 129 14 0 chr3 104901307 104901377 -54698406 - MTC LTR MaLR -350 71 1 9 1385 338 275 0 32 chr3 104901440 104901534 -54698249 - PB1D10 SINE Alu -8 109 19 9 1385 480 272 26 0 chr3 104902072 104902186 -54697597 + PB1D10 SINE Alu 1 117 0 9 1385 413 303 81 27 chr3 104902229 104902378 -54697405 - RSINE1 SINE B4 -6 159 3 9 1385 191 322 31 62 chr3 104903391 104903520 -54696263 + MIRb SINE MIR 82 206 -62 1 1385 496 256 55 60 chr3 104903642 104903825 -54695958 - B3A SINE B2 -14 184 3 1 1385 777 256 47 19 chr3 104903855 104904066 -54695717 - ID_B1 SINE B4 -7 217 1 1 1385 426 39 0 0 chr3 104904889 104904941 -54694842 + (TG)n Simple_repeat Simple_repeat 1 52 0 1 1385 456 298 90 21 chr3 104904950 104905094 -54694689 - RSINE1 SINE B4 -9 156 3 1 1385 266 216 63 74 chr3 104905347 104905442 -54694341 - L1MB2 LINE L1 -41 6142 6049 1 1385 414 324 32 6 chr3 104905462 104905688 -54694095 - L1MB2 LINE L1 -301 5888 5655 1 1385 220 306 42 0 chr3 104905720 104905792 -54693991 - MIRc SINE MIR -129 139 65 1 1385 201 337 68 99 chr3 104905872 104906063 -54693720 - L3 LINE CR1 -291 4198 4014 1 1385 200 361 0 0 chr3 104906283 104906344 -54693439 + MIRm SINE MIR 18 78 -198 1 1385 618 269 151 36 chr3 104906358 104906583 -54693200 + MLT1G1 LTR MaLR 1 251 -328 1 1385 201 26 79 0 chr3 104906604 104906642 -54693141 + (TA)n Simple_repeat Simple_repeat 2 42 0 1 1385 593 267 20 7 chr3 104906801 104906948 -54692835 + B1F SINE Alu 1 149 0 1 1385 263 327 160 59 chr3 104906983 104907152 -54692631 + MLT1G1 LTR MaLR 378 563 -6 1 1385 400 292 38 0 chr3 104907160 104907266 -54692517 + MIRb SINE MIR 95 204 -64 1 1385 1139 193 47 0 chr3 104907268 104907480 -54692303 + ID_B1 SINE B4 2 223 -1 1 1385 387 105 0 0 chr3 104907485 104907542 -54692241 + (TA)n Simple_repeat Simple_repeat 1 57 0 1 1385 501 250 77 15 chr3 104908200 104908330 -54691453 + B1F SINE Alu 12 149 0 1 1385 564 202 158 94 chr3 104908332 104908456 -54691327 + B3 SINE B2 2 150 -66 1 1385 648 26 0 0 chr3 104908456 104908534 -54691249 + (CA)n Simple_repeat Simple_repeat 1 78 0 1 1385 564 202 158 94 chr3 104908534 104908611 -54691172 + B3 SINE B2 151 216 0 1 1385 385 330 70 30 chr3 104908946 104909146 -54690637 + Charlie16a DNA MER1_type 32 239 -103 1 1385 620 293 62 5 chr3 104909825 104910017 -54689766 + MIR SINE MIR 60 262 0 1 1385 280 338 65 52 chr3 104909996 104910149 -54689634 - L3 LINE CR1 -567 3922 3768 1 1385 240 297 0 0 chr3 104910320 104910384 -54689399 - MIRb SINE MIR -31 237 174 1 1385 303 282 0 0 chr3 104910518 104910589 -54689194 + MER53 DNA hAT 4 74 -119 1 1385 234 128 0 0 chr3 104911293 104911332 -54688451 + (TCCC)n Simple_repeat Simple_repeat 3 41 0 1 1385 202 266 44 59 chr3 104911824 104911892 -54687891 + L2a LINE L2 3264 3330 -96 1 1385 5344 14 0 2 chr3 104911968 104912562 -54687221 - L1Md_A LINE L1 0 6582 5990 1 1385 570 15 0 0 chr3 104913307 104913374 -54686409 + (TG)n Simple_repeat Simple_repeat 1 67 0 1 1385 567 139 0 0 chr3 104913374 104913503 -54686280 + (GA)n Simple_repeat Simple_repeat 2 130 0 1 1385 2468 150 22 48 chr3 104913614 104914069 -54685714 + Lx4B LINE L1 6612 7054 -4 1 1385 288 77 0 0 chr3 104914233 104914272 -54685511 + (TTA)n Simple_repeat Simple_repeat 3 41 0 1 1385 234 0 0 0 chr3 104914541 104914567 -54685216 + (T)n Simple_repeat Simple_repeat 1 26 0 1 1385 2943 232 67 28 chr3 104914778 104914979 -54684804 + Lx8 LINE L1 6295 6506 -967 1 1385 1418 45 79 0 chr3 104914979 104915138 -54684645 + B2_Mm1a SINE B2 2 160 -33 1 1385 315 0 0 0 chr3 104915138 104915173 -54684610 + (TAAA)n Simple_repeat Simple_repeat 3 37 0 1 1385 1418 45 79 0 chr3 104915173 104915191 -54684592 + B2_Mm1a SINE B2 161 191 -2 1 1385 2943 232 67 28 chr3 104915191 104915708 -54684075 + Lx8 LINE L1 6507 7041 -432 1 1385 350 364 104 32 chr3 104916182 104916460 -54683323 + L2c LINE L2 3021 3318 -69 1 1385 525 303 93 33 chr3 104916789 104917119 -54682664 + MLT1J2 LTR MaLR 75 438 -10 1 1385 381 22 0 0 chr3 104917632 104917678 -54682105 + (TG)n Simple_repeat Simple_repeat 2 47 0 1 1385 1001 273 11 11 chr3 104917683 104917961 -54681822 - B4A SINE B4 -14 278 1 1 1385 437 328 67 17 chr3 104918117 104918297 -54681486 - MIR SINE MIR -24 238 50 1 1385 637 224 14 27 chr3 104919218 104919365 -54680418 + ID_B1 SINE B4 2 146 -78 1 1385 464 189 109 73 chr3 104919358 104919495 -54680288 + ID_B1 SINE B4 83 224 0 1 1385 1876 242 102 22 chr3 104921049 104921559 -54678224 + RMER15 LTR ERVL 25 575 0 1 1385 504 45 0 0 chr3 104921669 104921736 -54678047 + (TTTTG)n Simple_repeat Simple_repeat 4 70 0 1 1385 404 282 191 59 chr3 104922411 104922667 -54677116 + ORR1E LTR MaLR 65 354 -5 1 1385 2821 173 93 22 chr3 104922711 104923301 -54676482 + Lx7 LINE L1 6730 7361 -335 1 1385 247 267 0 0 chr3 104923304 104923379 -54676404 + T-rich Low_complexity Low_complexity 1 75 0 1 1385 280 250 71 0 chr3 104923379 104923463 -54676320 + Lx7 LINE L1 7607 7696 0 1 1385 928 259 50 43 chr3 104923640 104923922 -54675861 - B4A SINE B4 -4 288 5 1 1385 582 118 0 0 chr3 104924011 104924104 -54675679 + (TCCC)n Simple_repeat Simple_repeat 4 96 0 1 1385 345 133 0 0 chr3 104924189 104924264 -54675519 + (TCTG)n Simple_repeat Simple_repeat 4 78 0 1 1385 1244 204 16 72 chr3 104924267 104924573 -54675210 - B4A SINE B4 0 292 4 1 1385 288 310 45 102 chr3 104924581 104924757 -54675026 - LTR48 LTR ERV1 -13 774 609 1 1385 1252 25 19 0 chr3 104925530 104925689 -54674094 + (TTTC)n Simple_repeat Simple_repeat 1 162 0 1 1385 278 274 35 12 chr3 104926907 104926992 -54672791 - MER87 LTR ERV1 -23 518 432 1 1385 389 241 0 12 chr3 104927231 104927311 -54672472 - ID4_ SINE ID 0 83 5 1 1385 253 231 24 71 chr3 104927346 104927402 -54672381 - B3 SINE B2 -3 213 162 1 1385 1183 237 76 38 chr3 104927402 104927770 -54672013 - RLTR14 LTR ERV1 0 382 1 1 1385 920 220 0 23 chr3 104927770 104927938 -54671845 - B3 SINE B2 -52 164 1 1 1385 1086 294 59 13 chr3 104928920 104929309 -54670474 + L1MC1 LINE L1 5923 6329 -4 1 1385 968 224 195 21 chr3 104929372 104929689 -54670094 + MTEb LTR MaLR 8 379 0 1 1385 1112 178 86 9 chr3 104929695 104929905 -54669878 - URR1A DNA MER1_type 0 226 1 1 1385 386 0 41 0 chr3 104929973 104930022 -54669761 + (CTATA)n Simple_repeat Simple_repeat 4 54 0 1 1385 434 305 113 0 chr3 104930229 104930406 -54669377 + MamRep38 DNA hAT 2 198 -97 1 1385 314 294 147 0 chr3 104930454 104930556 -54669227 - MER5A DNA MER1_type -57 132 16 1 1385 303 49 0 0 chr3 104931180 104931221 -54668562 + (TTG)n Simple_repeat Simple_repeat 1 41 0 1 1385 417 70 0 0 chr3 104931221 104931278 -54668505 + (TG)n Simple_repeat Simple_repeat 1 57 0 1 1385 2124 131 60 16 chr3 104931575 104931939 -54667844 - RLTR28 LTR ERVL -143 381 2 1 1385 867 305 47 32 chr3 104932039 104932317 -54667466 + MER115 DNA Tip100 337 618 -75 1 1385 243 0 0 0 chr3 104932906 104932933 -54666850 + (T)n Simple_repeat Simple_repeat 1 27 0 1 1385 183 257 0 0 chr3 104933091 104933165 -54666618 + (TCCA)n Simple_repeat Simple_repeat 4 77 0 1 1385 253 346 0 23 chr3 104933171 104933301 -54666482 + (CACG)n Simple_repeat Simple_repeat 1 127 0 1 1385 263 243 6 17 chr3 104933307 104933483 -54666300 + (CCCA)n Simple_repeat Simple_repeat 3 176 0 1 1385 704 141 0 0 chr3 104933580 104933679 -54666104 + B1_Mur3 SINE Alu 10 108 -41 1 1385 183 129 0 0 chr3 104933707 104933738 -54666045 + (CAAAC)n Simple_repeat Simple_repeat 5 35 0 1 1385 402 147 0 0 chr3 104933772 104933840 -54665943 + (GGA)n Simple_repeat Simple_repeat 3 70 0 1 1385 280 269 94 19 chr3 104933875 104933981 -54665802 - MIRb SINE MIR -62 206 93 1 1385 219 240 8 39 chr3 104934458 104934588 -54665195 + CT-rich Low_complexity Low_complexity 4 129 0 1 1385 986 222 24 0 chr3 104934661 104934868 -54664915 - B3 SINE B2 0 216 5 1 1385 3195 28 3 3 chr3 104934872 104935237 -54664546 + RLTR10B2 LTR ERVK 1 365 0 1 1385 538 248 93 0 chr3 104935251 104935380 -54664403 - RSINE1 SINE B4 -22 143 3 1 1385 2041 183 33 3 chr3 104936721 104937082 -54662701 - ORR1D1 LTR MaLR 0 374 3 1 1385 192 77 0 0 chr3 104937208 104937234 -54662549 + (TCCC)n Simple_repeat Simple_repeat 3 28 0 1 1385 276 399 113 38 chr3 104937365 104937550 -54662233 - MER115 DNA Tip100 -494 199 1 1 1385 234 0 0 0 chr3 104937834 104937860 -54661923 + (TC)n Simple_repeat Simple_repeat 2 27 0 1 1385 853 234 50 72 chr3 104938528 104938587 -54661196 - ID_B1 SINE B4 -5 219 165 1 1385 1890 166 88 45 chr3 104938587 104939009 -54660774 + RMER10A LTR ERVL 3 442 0 1 1385 853 234 50 72 chr3 104939009 104939170 -54660613 - ID_B1 SINE B4 -60 164 4 1 1385 1209 78 0 0 chr3 104939212 104939378 -54660405 + (TTC)n Simple_repeat Simple_repeat 2 167 0 1 1385 505 273 18 53 chr3 104939448 104939618 -54660165 - RSINE1 SINE B4 0 165 2 1 1385 280 246 12 19 chr3 104940481 104940565 -54659218 - B1F2 SINE Alu -34 83 2 1 1385 944 252 78 33 chr3 104940826 104941097 -54658686 - Lx8 LINE L1 -2 7471 7189 1 1385 271 265 128 0 chr3 104941006 104941108 -54658675 - RMER1C Other Other -172 1170 1056 1 1385 303 328 21 84 chr3 104941531 104941674 -54658109 - MIR SINE MIR -36 226 93 1 1385 1801 164 9 33 chr3 104942253 104942582 -54657201 - ORR1A4 LTR MaLR -8 321 1 1 1385 236 200 88 44 chr3 104942584 104942652 -54657131 - RMER10A LTR ERVL -54 388 318 1 1385 293 229 0 24 chr3 104942811 104942896 -54656887 + (CATA)n Simple_repeat Simple_repeat 2 84 0 1 1385 313 279 8 8 chr3 104942927 104943057 -54656726 + (TA)n Simple_repeat Simple_repeat 2 131 0 1 1385 237 178 0 0 chr3 104943084 104943129 -54656654 + (TATATG)n Simple_repeat Simple_repeat 6 50 0 1 1385 500 274 42 48 chr3 104943371 104943383 -54656400 - RSINE1 SINE B4 0 165 154 1 1385 192 40 0 0 chr3 104943383 104943408 -54656375 + (TG)n Simple_repeat Simple_repeat 1 25 0 1 1385 500 274 42 48 chr3 104943408 104943560 -54656223 - RSINE1 SINE B4 -12 153 2 1 1385 346 277 63 63 chr3 104944995 104945153 -54654630 + RSINE1 SINE B4 8 165 0 1 1385 180 174 83 42 chr3 104945878 104945926 -54653857 - L4 LINE RTE -1317 712 663 1 1385 451 230 79 0 chr3 104946115 104946241 -54653542 - L1MA8 LINE L1 -4 6308 6169 1 1385 203 277 78 19 chr3 104946306 104946409 -54653374 - MIR3 SINE MIR -1 207 99 1 1385 181 289 84 0 chr3 104947305 104947388 -54652395 - MIR SINE MIR -74 134 45 1 1385 809 189 199 6 chr3 104949135 104949316 -54650467 - B3 SINE B2 0 216 1 1 1385 432 291 25 19 chr3 104949992 104950153 -54649630 + MIR SINE MIR 101 262 0 1 1385 1346 85 21 5 chr3 104950378 104950567 -54649216 - B2_Mm2 SINE B2 -3 192 1 1 1385 1493 180 8 72 chr3 104951119 104951555 -54648228 - MYSERV16_I-int LTR ERVK -2056 270 1 1 1385 3402 43 2 0 chr3 104951688 104952083 -54647700 - MTA_Mm LTR MaLR 0 396 1 1 1385 2037 215 84 27 chr3 104952573 104953085 -54646698 - RLTR20A LTR ERVK 0 541 1 1 1385 1026 51 0 0 chr3 104953100 104953238 -54646545 - B1_Mm SINE Alu 0 147 10 1 1385 2961 148 12 92 chr3 104955855 104956430 -54643353 - RLTR24 LTR ERV1 0 529 1 1 1385 365 296 23 46 chr3 104958015 104958146 -54641637 - B1F SINE Alu -2 147 20 1 1385 204 51 49 49 chr3 104958433 104958474 -54641309 + (TTAA)n Simple_repeat Simple_repeat 3 43 0 1 1385 1117 129 159 5 chr3 104958570 104958765 -54641018 - URR1B DNA MER1_type 0 225 1 1 1385 681 181 17 17 chr3 104960153 104960333 -54639450 + CT-rich Low_complexity Low_complexity 1 180 0 1 1385 213 219 0 0 chr3 104960400 104960441 -54639342 + (CCA)n Simple_repeat Simple_repeat 1 41 0 1 1385 2221 154 181 0 chr3 104961575 104962033 -54637750 - RMER4B LTR ERVK 0 585 45 1 1385 663 48 0 0 chr3 104962033 104962116 -54637667 + (TC)n Simple_repeat Simple_repeat 2 84 0 1 1385 2221 154 181 0 chr3 104962116 104962138 -54637645 - RMER4B LTR ERVK -541 44 20 1 1385 652 219 116 51 chr3 104962138 104962354 -54637429 + Lx8 LINE L1 7226 7455 -18 1 1385 243 0 0 0 chr3 104962561 104962588 -54637195 + (A)n Simple_repeat Simple_repeat 1 27 0 1 1385 858 238 9 57 chr3 104963033 104963260 -54636523 - B3 SINE B2 0 216 1 1 1385 193 189 55 36 chr3 104963260 104963315 -54636468 + MIRm SINE MIR 97 152 -124 1 1385 1652 125 239 3 chr3 104963317 104963614 -54636169 - ORR1B2 LTR MaLR 0 367 1 1 1385 484 130 20 10 chr3 104964235 104964336 -54635447 + (TCCA)n Simple_repeat Simple_repeat 3 104 0 1 1385 564 15 0 0 chr3 104964341 104964406 -54635377 + (TTCC)n Simple_repeat Simple_repeat 4 68 0 1 1385 1147 53 7 0 chr3 104964531 104964681 -54635102 - L1Md_A LINE L1 0 6582 6432 1 1385 548 268 0 8 chr3 104965182 104965306 -54634477 + ID_B1 SINE B4 95 217 -7 1 1385 272 262 96 10 chr3 104965598 104965702 -54634081 - MIRc SINE MIR -118 150 38 1 1385 181 373 49 41 chr3 104965943 104965974 -54633809 + MIRm SINE MIR 27 58 -218 1 1385 372 43 0 0 chr3 104965974 104966020 -54633763 + (TCTG)n Simple_repeat Simple_repeat 4 49 0 1 1385 203 382 50 32 chr3 104966020 104966221 -54633562 + MIRc SINE MIR 59 262 -6 1 1385 342 0 0 0 chr3 104969728 104969766 -54630017 + (CTG)n Simple_repeat Simple_repeat 1 38 0 1 1385 1060 294 59 17 chr3 104969849 104970271 -54629512 - Arthur1B DNA Tip100 -53 1172 733 1 1385 1072 76 7 7 chr3 104970512 104970658 -54629125 - B1_Mus2 SINE Alu -1 146 1 1 1385 270 0 0 0 chr3 104970774 104970804 -54628979 + (A)n Simple_repeat Simple_repeat 1 30 0 1 1385 399 250 85 17 chr3 104970994 104971112 -54628671 + MIR SINE MIR 34 159 -103 1 1385 239 265 177 73 chr3 104971458 104971706 -54628077 - B4 SINE B4 -17 275 2 1 1385 769 105 15 15 chr3 104971724 104971859 -54627924 + (GGGAGA)n Simple_repeat Simple_repeat 5 139 0 1 1385 378 0 0 0 chr3 104971971 104972013 -54627770 + (CA)n Simple_repeat Simple_repeat 2 43 0 1 1385 246 62 0 0 chr3 104972422 104972454 -54627329 + (TC)n Simple_repeat Simple_repeat 1 32 0 1 1385 275 186 122 54 chr3 104972732 104972806 -54626977 - ID4 SINE ID 0 83 5 1 1385 276 265 24 0 chr3 104973138 104973221 -54626562 - L2a LINE L2 0 3426 3342 1 1385 1220 170 191 10 chr3 104973432 104973741 -54626042 - ORR1D1 LTR MaLR -9 365 1 1 1385 357 174 0 0 chr3 104973787 104973856 -54625927 + CT-rich Low_complexity Low_complexity 2 70 0 1 1385 180 276 66 0 chr3 104975087 104975163 -54624620 - MIR SINE MIR -144 118 38 1 1385 236 167 0 20 chr3 104975238 104975287 -54624496 - URR1B DNA MER1_type 0 225 178 1 1385 7885 56 16 11 chr3 104975303 104976588 -54623195 - L1_Mus1 LINE L1 -2 6565 5273 1 1385 812 143 208 0 chr3 104976588 104976756 -54623027 - URR1B DNA MER1_type -23 202 1 1 1385 212 0 36 0 chr3 104976923 104976951 -54622832 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 1 1385 967 62 108 0 chr3 104976951 104977081 -54622702 - B1_Mus2 SINE Alu -2 145 2 1 1385 267 295 158 0 chr3 104977532 104977671 -54622112 - MER5B DNA MER1_type -16 162 2 1 1385 260 70 0 23 chr3 104977677 104977721 -54622062 + (TTTTA)n Simple_repeat Simple_repeat 2 44 0 1 1385 27 0 0 0 chr3 104977734 104977761 -54622022 + AT_rich Low_complexity Low_complexity 1 27 0 1 1385 675 0 0 0 chr3 104978012 104978087 -54621696 + (TCTA)n Simple_repeat Simple_repeat 2 76 0 1 1385 588 336 70 45 chr3 104978610 104979080 -54620703 - ERVL-E-int LTR ERVL -4305 1362 881 1 1385 437 292 146 70 chr3 104979268 104979596 -54620187 + MTEa LTR MaLR 11 363 -16 1 1385 1954 304 95 50 chr3 104979617 104979851 -54619932 + MTEa-int LTR MaLR 25 261 -1319 1 1385 450 0 0 0 chr3 104979851 104979901 -54619882 + (TTA)n Simple_repeat Simple_repeat 3 52 0 1 1385 1954 304 95 50 chr3 104979901 104980686 -54619097 + MTEa-int LTR MaLR 262 1090 -490 1 1385 638 92 54 78 chr3 104980973 104981102 -54618681 - B1_Mur4 SINE Alu -16 134 9 1 1385 1218 290 55 76 chr3 104981256 104981767 -54618016 + MTEa-int LTR MaLR 1078 1577 -3 1 1385 357 286 144 27 chr3 104981770 104981957 -54617826 + MTEa LTR MaLR 1 209 -170 1 1385 456 191 0 0 chr3 104981957 104982051 -54617732 + CT-rich Low_complexity Low_complexity 4 97 0 1 1385 330 264 39 28 chr3 104982053 104982229 -54617554 + MTEa LTR MaLR 197 379 0 1 1385 510 17 0 0 chr3 104983064 104983123 -54616660 + (TCCA)n Simple_repeat Simple_repeat 2 60 0 1 1385 290 149 0 29 chr3 104983136 104983205 -54616578 + (TATG)n Simple_repeat Simple_repeat 2 68 0 1 1385 285 143 20 0 chr3 104983205 104983254 -54616529 + (TCTA)n Simple_repeat Simple_repeat 2 51 0 1 1385 314 256 0 82 chr3 104983620 104983718 -54616065 + MTEb LTR MaLR 288 377 -2 1 1385 206 246 43 14 chr3 104983789 104983859 -54615924 + MIR3 SINE MIR 90 161 -47 1 1385 258 32 0 0 chr3 104984057 104984088 -54615695 + (T)n Simple_repeat Simple_repeat 1 31 0 1 1385 486 330 97 50 chr3 104984916 104985359 -54614424 + MLT1C LTR MaLR 1 464 -3 1 1385 273 298 150 6 chr3 104985419 104985644 -54614139 + L2a LINE L2 3110 3373 -14 1 1385 1308 231 42 13 chr3 104985646 104986023 -54613760 - L1M2 LINE L1 -1688 4455 4068 1 1385 572 277 24 10 chr3 104986443 104986629 -54613154 + MLT1A0 LTR MaLR 173 371 -3 1 1385 3207 63 0 8 chr3 104987544 104987943 -54611840 - MTA_Mm LTR MaLR 0 396 1 1 1385 589 341 11 11 chr3 104988222 104988492 -54611291 - HAL1 LINE L1 -2191 316 47 1 1386 24 32 0 0 chr3 104988952 104988983 -54610800 + AT_rich Low_complexity Low_complexity 1 31 0 1 1386 433 278 83 0 chr3 104988999 104989168 -54610615 - L1MA6 LINE L1 -17 6283 6101 1 1386 1019 254 44 11 chr3 104989308 104989583 -54610200 - RMER15 LTR ERVL 0 575 292 1 1386 290 259 27 75 chr3 104989623 104989769 -54610014 - RMER15 LTR ERVL -436 139 1 1 1386 243 314 103 95 chr3 104990193 104990446 -54609337 - MLT1J LTR MaLR -174 338 84 1 1386 2058 201 37 2 chr3 104990783 104991186 -54608597 + MTD LTR MaLR 3 419 0 1 1386 889 298 32 4 chr3 104991189 104991442 -54608341 + B4A SINE B4 24 283 -9 1 1386 879 103 0 0 chr3 104991506 104991661 -54608122 + (CA)n Simple_repeat Simple_repeat 1 155 0 1 1386 302 244 34 23 chr3 104992771 104992859 -54606924 + MER63B DNA AcHobo 315 403 -33 1 1386 351 0 0 0 chr3 104992915 104992954 -54606829 + (GA)n Simple_repeat Simple_repeat 1 39 0 1 1386 560 294 96 19 chr3 104993255 104993273 -54606510 - B4A SINE B4 -1 291 275 1 1386 369 0 0 0 chr3 104993273 104993314 -54606469 + (TG)n Simple_repeat Simple_repeat 1 41 0 1 1386 560 294 96 19 chr3 104993314 104993565 -54606218 - B4A SINE B4 -18 274 1 1 1386 315 0 0 0 chr3 104994005 104994040 -54605743 + (CAAA)n Simple_repeat Simple_repeat 1 35 0 1 1386 1266 175 8 47 chr3 104994067 104994301 -54605482 + URR1B DNA MER1_type 1 225 0 1 1386 213 336 61 9 chr3 104995033 104995147 -54604636 + L2 LINE L2 2738 2857 -562 1 1386 315 323 10 0 chr3 104997046 104997142 -54602641 + ID_B1 SINE B4 76 172 -52 1 1386 273 286 10 81 chr3 104997075 104997174 -54602609 + PB1D10 SINE Alu 25 116 -1 1 1386 465 110 0 0 chr3 104997509 104997582 -54602201 + (TG)n Simple_repeat Simple_repeat 2 74 0 1 1386 1080 209 74 22 chr3 104997625 104997894 -54601889 - B4 SINE B4 -8 284 2 1 1386 324 0 0 0 chr3 104998897 104998933 -54600850 + (TG)n Simple_repeat Simple_repeat 2 37 0 1 1386 614 317 47 34 chr3 104998981 104999216 -54600567 - B4A SINE B4 -6 286 49 1 1386 236 267 43 22 chr3 104999778 104999870 -54599913 + MTE2a LTR MaLR 281 374 -5 1 1386 2075 110 90 3 chr3 105001718 105002073 -54597710 - ORR1B1 LTR MaLR -8 386 1 1 1386 493 312 22 7 chr3 105002488 105002627 -54597156 - B1F SINE Alu -6 143 3 2 1386 521 309 0 0 chr3 105002654 105002780 -54597003 - ID_B1 SINE B4 -11 213 88 3 1386 209 357 0 0 chr3 105003759 105003829 -54595954 + (TCCA)n Simple_repeat Simple_repeat 4 73 0 4 1386 671 353 86 82 chr3 105003918 105003944 -54595839 - LTR33A_ LTR ERVL 0 531 507 5 1386 670 38 47 0 chr3 105003944 105004050 -54595733 + (GA)n Simple_repeat Simple_repeat 1 111 0 6 1386 671 353 86 82 chr3 105004050 105004506 -54595277 - LTR33A_ LTR ERVL -25 506 48 5 1386 198 91 0 0 chr3 105004506 105004539 -54595244 + (TG)n Simple_repeat Simple_repeat 1 33 0 7 1386 671 353 86 82 chr3 105004539 105004580 -54595203 - LTR33A_ LTR ERVL -484 47 6 5 1386 186 43 0 0 chr3 105005612 105005635 -54594148 + (TCTCC)n Simple_repeat Simple_repeat 1 23 0 8 1386 1263 94 0 0 chr3 105005635 105005815 -54593968 + (TCCCC)n Simple_repeat Simple_repeat 1 180 0 9 1386 183 281 176 28 chr3 105006441 105006617 -54593166 + MIR SINE MIR 32 233 -29 1 1386 5625 70 3 1 chr3 105007678 105008394 -54591389 - L1_Mus3 LINE L1 0 6638 5922 1 1386 4626 81 1 0 chr3 105008395 105009082 -54590701 + L1_Mus3 LINE L1 5244 5931 -635 1 1386 399 246 119 34 chr3 105009087 105009205 -54590578 + RCHARR1 DNA MER1_type 3 130 -844 1 1386 331 264 18 36 chr3 105009210 105009320 -54590463 + RSINE1 SINE B4 3 110 -55 1 1386 570 224 158 38 chr3 105009324 105009533 -54590250 + RCHARR1 DNA MER1_type 139 372 -602 1 1386 769 210 14 0 chr3 105009540 105009683 -54590100 + B1_Mur2 SINE Alu 5 149 0 1 1386 491 172 23 0 chr3 105009758 105009845 -54589938 - B1_Mur1 SINE Alu -19 130 42 1 1386 245 189 36 36 chr3 105009867 105009922 -54589861 - PB1D9 SINE Alu -61 59 5 1 1386 1746 188 19 33 chr3 105009924 105010320 -54589463 + RCHARR1 DNA MER1_type 383 780 -194 1 1386 2825 134 0 12 chr3 105010320 105010744 -54589039 - MTC LTR MaLR 0 421 3 1 1386 1746 188 19 33 chr3 105010744 105010771 -54589012 + RCHARR1 DNA MER1_type 781 800 -174 1 1386 797 264 22 0 chr3 105010795 105010973 -54588810 - B3A SINE B2 -16 182 1 1 1386 225 157 0 105 chr3 105010975 105011011 -54588772 + RCHARR1 DNA MER1_type 788 822 -152 1 1386 3322 53 2 0 chr3 105011011 105011409 -54588374 - MTB LTR MaLR 0 400 2 1 1386 225 157 0 105 chr3 105011409 105011429 -54588354 + RCHARR1 DNA MER1_type 823 838 -136 1 1386 719 11 11 0 chr3 105011432 105011520 -54588263 + (TCTA)n Simple_repeat Simple_repeat 4 92 0 2 1386 738 233 20 50 chr3 105012598 105012797 -54586986 - B3A SINE B2 -5 193 1 2 1386 359 246 26 0 chr3 105013127 105013217 -54586566 - ID4 SINE ID -52 100 9 2 1386 541 258 0 16 chr3 105014128 105014250 -54585533 + PB1D7 SINE Alu 1 120 0 2 1386 216 97 0 0 chr3 105014919 105014950 -54584833 + (GGGA)n Simple_repeat Simple_repeat 3 33 0 2 1386 246 32 0 0 chr3 105015216 105015247 -54584536 + (CA)n Simple_repeat Simple_repeat 1 31 0 2 1386 183 80 0 0 chr3 105015376 105015401 -54584382 + (TC)n Simple_repeat Simple_repeat 2 26 0 2 1386 7105 101 1 1 chr3 105015425 105016380 -54583403 - Lx LINE L1 -8 6646 5692 2 1386 1877 231 14 39 chr3 105016362 105016844 -54582939 + L1VL4 LINE L1 189 658 -5644 2 1386 978 228 59 123 chr3 105016943 105017348 -54582435 - MTE2a LTR MaLR 0 379 1 2 1386 289 308 153 6 chr3 105017355 105017538 -54582245 + MIR SINE MIR 46 255 -7 3 1386 215 245 38 0 chr3 105019255 105019308 -54580475 - MIRm SINE MIR -136 140 86 3 1386 361 268 183 0 chr3 105019812 105019976 -54579807 - MIR SINE MIR -54 208 15 3 1386 186 133 0 0 chr3 105020186 105020216 -54579567 + (TTTA)n Simple_repeat Simple_repeat 1 30 0 3 1386 548 197 119 8 chr3 105020264 105020382 -54579401 - RSINE1 SINE B4 -31 134 4 3 1386 339 290 193 0 chr3 105020820 105020965 -54578818 + MIR SINE MIR 33 205 -57 3 1386 267 152 47 71 chr3 105022126 105022211 -54577572 + MIR SINE MIR 110 192 -70 3 1386 207 0 0 0 chr3 105022920 105022943 -54576840 + (CCCCCA)n Simple_repeat Simple_repeat 2 24 0 3 1386 423 0 0 0 chr3 105023087 105023134 -54576649 + (CA)n Simple_repeat Simple_repeat 2 48 0 3 1386 207 0 0 0 chr3 105023178 105023201 -54576582 + (TC)n Simple_repeat Simple_repeat 2 24 0 3 1386 527 278 60 87 chr3 105023208 105023269 -54576514 - B4A SINE B4 0 292 236 4 1386 1093 206 5 23 chr3 105023269 105023483 -54576300 - B3 SINE B2 -6 210 1 4 1386 527 278 60 87 chr3 105023483 105023720 -54576063 - B4A SINE B4 -57 235 2 4 1386 180 222 0 0 chr3 105023836 105023881 -54575902 - L2 LINE L2 -1006 2413 2369 4 1386 21 0 0 0 chr3 105023884 105023905 -54575878 + AT_rich Low_complexity Low_complexity 1 21 0 4 1386 304 296 23 0 chr3 105024238 105024326 -54575457 + B4 SINE B4 176 265 -27 4 1386 1011 150 0 0 chr3 105024328 105024501 -54575282 + CT-rich Low_complexity Low_complexity 1 173 0 4 1386 234 351 69 30 chr3 105025086 105025318 -54574465 - L2c LINE L2 -67 3320 3080 4 1386 800 302 55 48 chr3 105026276 105026565 -54573218 - B4 SINE B4 0 292 2 4 1386 370 289 65 24 chr3 105027409 105027579 -54572204 + MER97c DNA MER1_type? 3 179 -911 4 1386 873 184 264 13 chr3 105027679 105027982 -54571801 - MTEa LTR MaLR 0 379 1 4 1386 22 56 0 0 chr3 105028767 105028803 -54570980 + AT_rich Low_complexity Low_complexity 1 36 0 5 1386 985 215 5 37 chr3 105028804 105029021 -54570762 - B3 SINE B2 -5 211 2 5 1386 378 42 0 0 chr3 105029113 105029161 -54570622 + (TG)n Simple_repeat Simple_repeat 1 48 0 5 1386 492 316 0 56 chr3 105029164 105029325 -54570458 - RSINE1 SINE B4 -9 156 5 5 1386 1164 75 11 6 chr3 105029333 105029507 -54570276 + (TTCTC)n Simple_repeat Simple_repeat 5 179 0 5 1386 765 186 0 22 chr3 105029518 105029699 -54570084 + CT-rich Low_complexity Low_complexity 3 179 0 5 1386 441 0 0 0 chr3 105030866 105030915 -54568868 + (TG)n Simple_repeat Simple_repeat 1 49 0 5 1386 297 0 0 0 chr3 105030915 105030947 -54568836 + (GA)n Simple_repeat Simple_repeat 1 33 0 5 1386 403 296 0 27 chr3 105030955 105031066 -54568717 - PB1D10 SINE Alu -9 108 1 5 1386 824 277 33 0 chr3 105032686 105032928 -54566855 + L1MA5 LINE L1 6042 6291 -9 5 1386 299 317 94 41 chr3 105033343 105033578 -54566205 - L1ME3B LINE L1 -271 5969 5735 6 1386 414 0 0 0 chr3 105033578 105033624 -54566159 + (TC)n Simple_repeat Simple_repeat 1 46 0 6 1386 299 317 94 41 chr3 105033624 105033727 -54566056 - L1ME3B LINE L1 -506 5734 5614 6 1386 192 77 0 0 chr3 105035574 105035600 -54564183 + (CAA)n Simple_repeat Simple_repeat 2 27 0 6 1386 555 296 6 36 chr3 105036216 105036384 -54563399 - RSINE1 SINE B4 0 165 3 6 1386 240 146 0 0 chr3 105036495 105036536 -54563247 - L1MC5 LINE L1 -632 7329 7289 6 1386 296 24 24 0 chr3 105036898 105036939 -54562844 + (CAAA)n Simple_repeat Simple_repeat 3 44 0 6 1386 569 14 14 0 chr3 105036984 105037054 -54562729 + (TC)n Simple_repeat Simple_repeat 1 71 0 6 1386 349 246 122 9 chr3 105037055 105037170 -54562613 - B1F SINE Alu -21 128 1 6 1386 490 240 65 11 chr3 105037173 105037358 -54562425 - Tigger6a DNA MER2_type -63 1020 826 6 1386 248 258 52 45 chr3 105037407 105037541 -54562242 - L1MEc LINE L1 -5220 1180 1046 6 1386 288 339 79 35 chr3 105037672 105037926 -54561857 - Lx8 LINE L1 -6 7467 7203 7 1386 1697 216 70 21 chr3 105037932 105038319 -54561464 - MTD LTR MaLR -13 406 1 7 1386 2677 289 35 22 chr3 105038322 105038821 -54560962 - Lx8 LINE L1 -274 7199 6703 7 1386 3881 12 0 0 chr3 105038821 105039250 -54560533 - L1Md_A LINE L1 0 6582 6154 7 1386 2677 289 35 22 chr3 105039250 105039572 -54560211 - Lx8 LINE L1 -771 6702 6367 7 1386 1562 148 45 79 chr3 105039589 105039721 -54560062 - ORR1C2 LTR MaLR -63 321 176 7 1386 471 35 0 0 chr3 105039721 105039778 -54560005 + (GGGGA)n Simple_repeat Simple_repeat 5 61 0 7 1386 1562 148 45 79 chr3 105039778 105039975 -54559808 - ORR1C2 LTR MaLR -209 175 4 7 1386 599 237 8 8 chr3 105039975 105040107 -54559676 - Lx8 LINE L1 -1101 6372 6241 7 1386 288 252 89 20 chr3 105040270 105040371 -54559412 - PB1D10 SINE Alu -9 108 1 7 1386 355 312 198 0 chr3 105040642 105040895 -54558888 - L1MEc LINE L1 -5729 671 369 6 1386 797 250 59 37 chr3 105040894 105041164 -54558619 - L1M2 LINE L1 -1817 4326 4051 7 1386 1650 272 77 26 chr3 105041206 105041594 -54558189 + L1M2 LINE L1 2636 3046 -3097 7 1386 459 0 0 0 chr3 105041594 105041645 -54558138 + (GA)n Simple_repeat Simple_repeat 2 52 0 7 1386 1650 272 77 26 chr3 105041645 105042063 -54557720 + L1M2 LINE L1 3047 3483 -2660 7 1386 391 257 10 0 chr3 105042055 105042156 -54557627 - L1M2 LINE L1 -2509 3634 3533 7 1386 456 77 0 0 chr3 105042286 105042351 -54557432 + (TCCC)n Simple_repeat Simple_repeat 4 68 0 7 1386 262 304 43 9 chr3 105043708 105043824 -54555959 + LTR52 LTR ERVL 1 120 -301 8 1386 323 242 0 87 chr3 105043926 105044030 -54555753 + LTR52 LTR ERVL 322 416 -5 8 1386 288 120 0 0 chr3 105044544 105044594 -54555189 + (TG)n Simple_repeat Simple_repeat 1 50 0 8 1386 560 291 149 21 chr3 105044614 105044856 -54554927 - B4A SINE B4 -18 274 2 8 1386 402 21 0 0 chr3 105045038 105045085 -54554698 + (TC)n Simple_repeat Simple_repeat 2 48 0 8 1386 794 288 146 26 chr3 105045086 105045579 -54554204 - L1MEg LINE L1 -1977 4342 3791 8 1386 210 150 0 0 chr3 105045665 105045705 -54554078 + (TG)n Simple_repeat Simple_repeat 1 40 0 8 1386 1679 241 50 26 chr3 105045778 105046199 -54553584 - Lx6 LINE L1 0 7460 7030 8 1386 3223 258 90 20 chr3 105046199 105046292 -54553491 - RMER1C Other Other -19 1323 1240 8 1386 309 51 0 0 chr3 105046292 105046331 -54553452 + (TAAAA)n Simple_repeat Simple_repeat 2 40 0 8 1386 3223 261 88 24 chr3 105046331 105047242 -54552541 - RMER1C Other Other -103 1239 42 8 1386 258 264 0 0 chr3 105047290 105047343 -54552440 + (TG)n Simple_repeat Simple_repeat 2 54 0 8 1386 1281 269 163 35 chr3 105047343 105048521 -54551262 - L1MEg LINE L1 -2551 3768 2454 8 1386 237 33 0 0 chr3 105048521 105048551 -54551232 + (TCTG)n Simple_repeat Simple_repeat 2 31 0 9 1386 324 330 59 0 chr3 105048551 105048669 -54551114 - B1F1 SINE Alu -24 125 1 9 1386 228 254 0 29 chr3 105048757 105048826 -54550957 + GA-rich Low_complexity Low_complexity 1 67 0 9 1386 279 0 0 0 chr3 105048866 105048897 -54550886 + (TTTA)n Simple_repeat Simple_repeat 1 31 0 9 1386 1114 44 29 0 chr3 105048899 105049036 -54550747 - B1_Mm SINE Alu -6 141 1 9 1386 756 243 94 0 chr3 105049036 105049238 -54550545 - B4A SINE B4 -64 228 8 9 1386 292 328 21 48 chr3 105049284 105049473 -54550310 - L1MEg LINE L1 -4269 2131 1948 8 1386 34983 66 0 16 chr3 105049474 105054658 -54545125 + L1Md_F2 LINE L1 487 5586 -297 9 1386 8152 48 2 2 chr3 105054658 105055642 -54544141 + L1Md_F2 LINE L1 5587 6570 -12 9 1386 452 296 46 65 chr3 105055642 105056189 -54543594 - L1MEg LINE L1 -4441 1959 1432 8 1386 457 275 9 9 chr3 105056199 105056309 -54543474 - PB1D10 SINE Alu -7 110 1 9 1386 818 234 39 14 chr3 105056326 105056534 -54543249 - B3 SINE B2 -3 213 1 9 1386 276 379 88 8 chr3 105056695 105056820 -54542963 - LTR16A LTR ERVL -190 261 127 9 1386 249 327 68 29 chr3 105057762 105057967 -54541816 - L3 LINE CR1 -133 4356 4144 1 1386 209 332 56 87 chr3 105058191 105058422 -54541361 - L2b LINE L2 -102 3273 3050 1 1386 1206 202 65 64 chr3 105058929 105059306 -54540477 + RLTR26 LTR ERVK 5 417 -225 1 1386 470 309 0 42 chr3 105059458 105059600 -54540183 + B1F SINE Alu 11 146 -3 1 1386 557 175 14 14 chr3 105061048 105061187 -54538596 + GA-rich Low_complexity Low_complexity 3 141 0 1 1386 1069 80 6 22 chr3 105061200 105061379 -54538404 + (GAA)n Simple_repeat Simple_repeat 1 176 0 1 1386 1115 114 6 0 chr3 105061579 105061754 -54538029 + (TTTC)n Simple_repeat Simple_repeat 2 177 0 1 1386 374 325 59 8 chr3 105061758 105061876 -54537907 - ID_B1 SINE B4 -17 207 84 1 1386 667 308 9 16 chr3 105062032 105062251 -54537532 + B3A SINE B2 1 216 0 1 1386 197 238 55 77 chr3 105062481 105062572 -54537211 - MIR3 SINE MIR -19 189 101 1 1386 953 307 100 35 chr3 105063038 105063201 -54536582 - Charlie4a DNA MER1_type -1 507 318 1 1386 526 220 28 0 chr3 105063201 105063310 -54536473 - PB1D10 SINE Alu -5 112 1 1 1386 953 307 100 35 chr3 105063310 105063605 -54536178 - Charlie4a DNA MER1_type -191 317 19 1 1386 333 335 35 17 chr3 105063712 105063885 -54535898 + L2c LINE L2 2412 2587 -832 1 1386 183 200 0 0 chr3 105063929 105063969 -54535814 - L2b LINE L2 -13 3362 3323 1 1386 189 322 68 34 chr3 105064269 105064417 -54535366 + L2c LINE L2 3059 3211 -176 1 1386 1284 7 0 0 chr3 105064523 105064668 -54535115 + (TCTCCC)n Simple_repeat Simple_repeat 1 145 0 1 1386 216 361 49 98 chr3 105064898 105065245 -54534538 - L2c LINE L2 0 3387 3058 1 1386 525 315 76 45 chr3 105065679 105066035 -54533748 - MLT1B LTR MaLR -16 374 8 1 1386 2187 73 13 0 chr3 105066047 105066362 -54533421 - ORR1A2 LTR MaLR -8 319 1 1 1386 218 95 0 23 chr3 105066829 105066872 -54532911 + (CAAAAA)n Simple_repeat Simple_repeat 3 44 0 1 1386 920 298 20 60 chr3 105067334 105067634 -54532149 + B4A SINE B4 1 288 -4 1 1386 258 32 0 0 chr3 105068104 105068135 -54531648 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1 1386 702 248 20 7 chr3 105069279 105069429 -54530354 + B3A SINE B2 2 153 -45 1 1386 486 0 0 0 chr3 105069436 105069490 -54530293 + (CA)n Simple_repeat Simple_repeat 2 55 0 1 1386 468 354 86 26 chr3 105069495 105069808 -54529975 - L2 LINE L2 -527 2892 2561 1 1386 334 266 108 18 chr3 105070421 105070532 -54529251 - B1F2 SINE Alu -10 139 19 1 1386 350 335 86 17 chr3 105070550 105070784 -54528999 - MIRb SINE MIR -17 251 2 1 1386 228 111 0 0 chr3 105071757 105071793 -54527990 + (TTCA)n Simple_repeat Simple_repeat 4 39 0 1 1386 342 0 0 0 chr3 105072304 105072342 -54527441 + (TG)n Simple_repeat Simple_repeat 2 39 0 1 1386 547 322 34 72 chr3 105072455 105072746 -54527037 - MT2A LTR ERVL -149 384 105 1 1386 549 297 12 6 chr3 105072824 105072990 -54526793 - RMER15 LTR ERVL -57 518 352 1 1386 408 40 0 0 chr3 105074098 105074148 -54525635 + (GA)n Simple_repeat Simple_repeat 2 51 0 1 1386 633 301 10 67 chr3 105074585 105074884 -54524899 - B4A SINE B4 -8 284 3 1 1386 412 288 46 0 chr3 105074890 105075043 -54524740 + MER58A DNA MER1_type 50 209 -15 1 1386 449 299 112 5 chr3 105075167 105075372 -54524411 + MIR SINE MIR 17 243 -19 1 1386 315 267 18 62 chr3 105075398 105075510 -54524273 - MIRb SINE MIR -29 239 133 1 1386 831 275 75 41 chr3 105076350 105076695 -54523088 - ORR1E LTR MaLR -2 357 1 1 1386 281 330 19 0 chr3 105077783 105077886 -54521897 + MER5A DNA MER1_type 84 188 -1 1 1386 212 229 97 16 chr3 105077948 105078010 -54521773 - L2a LINE L2 -6 3420 3354 1 1386 263 235 37 12 chr3 105078052 105078134 -54521649 + GA-rich Low_complexity Low_complexity 3 86 0 1 1386 343 130 0 25 chr3 105078513 105078592 -54521191 + GA-rich Low_complexity Low_complexity 2 78 0 1 1386 375 365 14 0 chr3 105078728 105078876 -54520907 + MER5A DNA MER1_type 9 158 -31 1 1386 192 340 30 40 chr3 105078929 105079030 -54520753 + MER5B DNA MER1_type 17 116 -62 1 1386 756 265 90 31 chr3 105079307 105079529 -54520254 + B4A SINE B4 41 275 -17 1 1386 347 325 24 24 chr3 105080668 105080794 -54518989 - MER96 DNA hAT -49 126 1 1 1386 180 299 49 49 chr3 105081399 105081480 -54518303 - L2c LINE L2 -315 3072 2992 1 1386 603 265 131 70 chr3 105081687 105082102 -54517681 - RMER13A LTR ERVK -41 586 96 1 1386 496 234 99 0 chr3 105082322 105082433 -54517350 + B1_Mur1 SINE Alu 9 130 -19 1 1386 1005 217 34 5 chr3 105082762 105082970 -54516813 - B3 SINE B2 0 216 3 1 1386 1486 143 5 0 chr3 105083135 105083358 -54516425 - URR1B DNA MER1_type 0 225 2 1 1386 2112 164 76 8 chr3 105085509 105085903 -54513880 + MTC LTR MaLR 1 421 0 1 1386 266 196 18 0 chr3 105085903 105085959 -54513824 + MTEa LTR MaLR 321 377 -2 1 1386 2776 45 30 0 chr3 105086027 105086363 -54513420 + ORR1A1 LTR MaLR 1 346 0 1 1386 263 276 66 0 chr3 105086368 105086444 -54513339 + B3 SINE B2 123 203 -13 1 1386 590 208 11 17 chr3 105086632 105086808 -54512975 + CT-rich Low_complexity Low_complexity 4 178 0 1 1386 792 145 0 0 chr3 105086770 105086929 -54512854 + (TC)n Simple_repeat Simple_repeat 1 159 0 1 1386 358 274 42 0 chr3 105086929 105087024 -54512759 - BC1_Mm scRNA scRNA -53 99 1 1 1386 187 387 59 0 chr3 105087626 105087745 -54512038 + MIRb SINE MIR 60 185 -83 1 1386 936 249 61 127 chr3 105087748 105088143 -54511640 + MTE2a LTR MaLR 3 371 -8 1 1386 351 44 0 0 chr3 105088186 105088231 -54511552 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 1386 604 286 107 44 chr3 105088287 105088558 -54511225 + B4 SINE B4 5 292 0 1 1386 349 364 59 23 chr3 105088710 105088966 -54510817 - LTR78 LTR ERV1 -174 1130 866 1 1386 801 229 16 27 chr3 105089734 105089922 -54509861 + B3A SINE B2 1 186 -12 1 1386 470 305 95 65 chr3 105090016 105090658 -54509125 - HAL1 LINE L1 -110 2397 1737 1 1386 242 284 44 44 chr3 105090780 105090894 -54508889 - HAL1 LINE L1 -902 1605 1492 1 1386 22 0 0 0 chr3 105090898 105090920 -54508863 + AT_rich Low_complexity Low_complexity 1 22 0 1 1386 491 363 6 13 chr3 105090985 105091144 -54508639 + RSINE1 SINE B4 5 162 -3 1 1386 192 40 0 0 chr3 105092461 105092486 -54507297 + (TCTG)n Simple_repeat Simple_repeat 4 28 0 1 1386 264 260 13 13 chr3 105092501 105092579 -54507204 + (TATG)n Simple_repeat Simple_repeat 3 80 0 1 1386 285 329 30 83 chr3 105092659 105092828 -54506955 - B4A SINE B4 -130 162 3 1 1386 432 0 0 0 chr3 105093098 105093146 -54506637 + (TG)n Simple_repeat Simple_repeat 1 48 0 1 1386 24 53 0 0 chr3 105093329 105093367 -54506416 + AT_rich Low_complexity Low_complexity 1 38 0 1 1386 369 256 0 0 chr3 105094004 105094090 -54505693 + L2b LINE L2 3289 3374 -1 1 1386 239 244 13 0 chr3 105094508 105094586 -54505197 + (CA)n Simple_repeat Simple_repeat 2 80 0 1 1386 191 319 138 0 chr3 105095862 105095978 -54503805 + MIRb SINE MIR 91 222 -46 1 1386 911 219 3 9 chr3 105098406 105098765 -54501018 + GA-rich Low_complexity Low_complexity 1 356 0 1 1386 386 255 19 9 chr3 105098768 105098875 -54500908 + PB1D10 SINE Alu 6 113 -4 1 1386 183 184 0 0 chr3 105099789 105099827 -54499956 + (TATG)n Simple_repeat Simple_repeat 1 38 0 1 1386 195 288 62 0 chr3 105100091 105100171 -54499612 + MER5B DNA MER1_type 92 176 -2 1 1386 507 76 13 0 chr3 105100522 105100601 -54499182 + Lx LINE L1 6574 6653 -1 1 1386 483 63 0 0 chr3 105100622 105100685 -54499098 + (GGAA)n Simple_repeat Simple_repeat 3 65 0 1 1386 302 294 27 27 chr3 105100703 105100815 -54498968 + MIRb SINE MIR 78 189 -79 1 1386 239 309 139 13 chr3 105104689 105104840 -54494943 - L3 LINE CR1 -465 4024 3855 1 1386 339 85 0 0 chr3 105106098 105106145 -54493638 + (TTCA)n Simple_repeat Simple_repeat 4 50 0 1 1386 540 234 122 23 chr3 105106759 105106890 -54492893 + RSINE1 SINE B4 3 146 -19 1 1386 453 81 0 0 chr3 105107495 105107557 -54492226 + (CAG)n Simple_repeat Simple_repeat 2 63 0 1 1386 378 0 0 0 chr3 105107559 105107601 -54492182 + (TG)n Simple_repeat Simple_repeat 1 42 0 1 1386 587 309 120 26 chr3 105107614 105107880 -54491903 - B4 SINE B4 0 292 2 1 1386 244 326 126 10 chr3 105107902 105108100 -54491683 + MIRb SINE MIR 22 242 -26 1 1386 300 287 20 0 chr3 105108107 105108208 -54491575 + PB1D10 SINE Alu 2 104 -13 1 1386 361 294 35 41 chr3 105108408 105108578 -54491205 - L3 LINE CR1 -687 3802 3634 1 1386 402 115 0 0 chr3 105108879 105108940 -54490843 + (TCCC)n Simple_repeat Simple_repeat 1 61 0 1 1386 215 345 92 14 chr3 105112670 105112811 -54486972 + MIRb SINE MIR 101 252 -16 1 1386 305 225 66 22 chr3 105113550 105113641 -54486142 + MTEa LTR MaLR 277 371 -8 1 1386 414 261 214 0 chr3 105113654 105113829 -54485954 - MTE2b LTR MaLR -13 366 154 1 1386 366 281 32 88 chr3 105113885 105114010 -54485773 + B1F SINE Alu 9 126 -23 1 1386 617 230 0 0 chr3 105113903 105114016 -54485767 + ID_B1 SINE B4 97 209 -15 1 1386 1008 119 6 17 chr3 105114017 105114196 -54485587 + (GAAA)n Simple_repeat Simple_repeat 4 180 0 1 1386 709 237 0 0 chr3 105115525 105115664 -54484119 + RSINE1 SINE B4 3 141 -24 1 1386 414 374 39 19 chr3 105115915 105116174 -54483609 - LTR16B1 LTR ERVL -27 453 190 1 1386 649 252 42 70 chr3 105116613 105116826 -54482957 - B3 SINE B2 -5 211 5 1 1386 246 379 24 16 chr3 105116923 105117049 -54482734 + B1F SINE Alu 14 140 -9 1 1386 241 245 80 73 chr3 105117753 105117903 -54481880 - L1M6 LINE L1 -6271 225 75 2 1386 355 327 10 29 chr3 105118226 105118330 -54481453 - ID_B1 SINE B4 -41 183 82 2 1386 302 184 306 0 chr3 105119507 105119605 -54480178 + MIRc SINE MIR 123 250 -18 2 1387 438 275 15 9 chr3 105119853 105120010 -54479773 + L1MB8 LINE L1 6018 6177 -2 2 1387 29 0 0 0 chr3 105120169 105120198 -54479585 + AT_rich Low_complexity Low_complexity 1 29 0 2 1387 2164 294 37 22 chr3 105120470 105121148 -54478635 - Lx8 LINE L1 0 7473 6786 2 1387 245 344 41 8 chr3 105121152 105121275 -54478508 + MLT2B3 LTR ERVL 3 129 -425 2 1387 521 353 59 65 chr3 105121537 105122013 -54477770 - MLT2B1 LTR ERVL -40 480 8 2 1387 581 309 70 23 chr3 105122715 105122973 -54476810 - LTR16E2 LTR ERVL 0 568 299 2 1387 204 143 0 28 chr3 105123622 105123658 -54476125 + (CAT)n Simple_repeat Simple_repeat 2 36 0 2 1387 1993 147 69 0 chr3 105124061 105124422 -54475361 - ORR1B1 LTR MaLR -8 386 1 2 1387 300 278 30 53 chr3 105124653 105124786 -54474997 - ERVL-E-int LTR ERVL -1553 4114 3985 2 1387 1473 253 52 8 chr3 105125792 105126159 -54473624 + MTD LTR MaLR 15 397 -22 2 1387 591 350 82 40 chr3 105126672 105127124 -54472659 - HERV16-int LTR ERVL -2765 2231 1761 2 1387 271 265 8 41 chr3 105127186 105127308 -54472475 + (TA)n Simple_repeat Simple_repeat 1 118 0 2 1387 1606 186 114 109 chr3 105127532 105127590 -54472193 + RMER1B Other Other 44 100 -966 2 1387 683 62 18 9 chr3 105127590 105127703 -54472080 + L1Md_F3 LINE L1 6469 6582 -2 2 1387 2682 225 108 81 chr3 105127703 105129054 -54470729 + RMER1A Other Other 1 1030 0 2 1387 299 345 23 41 chr3 105129113 105129285 -54470498 + MER63A DNA AcHobo 40 208 -2 2 1387 522 396 68 49 chr3 105130744 105131211 -54468572 - LTR16E2 LTR ERVL -92 476 1 2 1387 258 292 0 109 chr3 105131220 105131339 -54468444 + L2c LINE L2 3280 3385 -2 2 1387 450 0 0 0 chr3 105131518 105131568 -54468215 + (TG)n Simple_repeat Simple_repeat 2 51 0 2 1387 193 349 44 50 chr3 105133245 105133405 -54466378 - MIRb SINE MIR -76 192 34 2 1387 188 35 35 0 chr3 105133807 105133836 -54465947 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 2 1387 1078 113 17 0 chr3 105134645 105134822 -54464961 + (TCTCC)n Simple_repeat Simple_repeat 1 180 0 2 1387 232 228 0 95 chr3 105134927 105134990 -54464793 - B4 SINE B4 -25 267 211 2 1387 3571 10 5 0 chr3 105135007 105135401 -54464382 + MTA_Mm LTR MaLR 1 396 0 2 1387 358 216 232 0 chr3 105135459 105135610 -54464173 - B4 SINE B4 -102 190 5 2 1387 266 265 116 31 chr3 105135826 105135985 -54463798 - MIR SINE MIR -37 225 44 2 1387 241 289 0 0 chr3 105137424 105137476 -54462307 + ID4 SINE ID 21 72 -11 2 1387 302 312 177 0 chr3 105137974 105138070 -54461713 - PB1D7 SINE Alu -6 114 2 2 1387 249 242 129 0 chr3 105138411 105138473 -54461310 - ID4 SINE ID -11 72 3 2 1387 215 343 9 62 chr3 105139024 105139136 -54460647 - L2c LINE L2 -18 3369 3264 2 1387 545 279 111 53 chr3 105139603 105139792 -54459991 + RMER30 DNA MER1_type 1 200 -2 2 1387 553 241 18 0 chr3 105140210 105140322 -54459461 + B1F SINE Alu 23 136 -13 2 1387 290 45 23 0 chr3 105140322 105140366 -54459417 + (TTTTTG)n Simple_repeat Simple_repeat 2 46 0 2 1387 39319 4 1 0 chr3 105140462 105146017 -54453766 + L1Md_A LINE L1 30 5586 -297 2 1387 9224 2 0 0 chr3 105146017 105147013 -54452770 + L1Md_A LINE L1 5587 6582 0 2 1387 270 0 0 0 chr3 105147066 105147096 -54452687 + (TG)n Simple_repeat Simple_repeat 2 31 0 2 1387 195 42 0 0 chr3 105147150 105147174 -54452609 + (TG)n Simple_repeat Simple_repeat 1 24 0 2 1387 813 270 63 19 chr3 105147176 105147444 -54452339 - B4A SINE B4 -12 280 1 2 1387 9520 24 0 5 chr3 105148210 105149293 -54450490 + L1_Mm LINE L1 4507 5586 -297 2 1387 9104 6 0 3 chr3 105149293 105150292 -54449491 + L1Md_T LINE L1 5587 6582 0 2 1387 9520 24 0 5 chr3 105150292 105150309 -54449474 + L1_Mm LINE L1 5587 5601 -282 2 1387 1141 106 0 11 chr3 105150486 105150668 -54449115 + (TTC)n Simple_repeat Simple_repeat 1 180 0 2 1387 219 25 0 70 chr3 105150673 105150716 -54449067 + (TCC)n Simple_repeat Simple_repeat 3 42 0 2 1387 999 161 0 0 chr3 105150716 105150896 -54448887 + CT-rich Low_complexity Low_complexity 1 180 0 2 1387 318 206 147 49 chr3 105152202 105152345 -54447438 - L1ME4a LINE L1 -3 6121 5965 2 1387 575 292 77 45 chr3 105152485 105152772 -54447011 - ORR1E LTR MaLR 0 359 64 2 1387 744 290 18 77 chr3 105154488 105154761 -54445022 + MER73 LTR ERVL 1 257 -387 2 1387 402 21 0 0 chr3 105154767 105154814 -54444969 + (TG)n Simple_repeat Simple_repeat 1 47 0 2 1387 233 204 111 0 chr3 105154841 105154895 -54444888 + MER73 LTR ERVL 252 311 -333 2 1387 230 285 217 42 chr3 105155610 105155753 -54444030 + MIRb SINE MIR 80 247 -21 2 1387 672 259 66 0 chr3 105155804 105155970 -54443813 + B3 SINE B2 40 216 0 2 1387 222 37 0 0 chr3 105156801 105156828 -54442955 + (CATA)n Simple_repeat Simple_repeat 2 28 0 2 1387 189 349 31 31 chr3 105158786 105158916 -54440867 - MIR3 SINE MIR -5 203 74 2 1387 763 168 53 12 chr3 105159896 105160065 -54439718 + URR1B DNA MER1_type 50 225 0 2 1387 214 231 0 0 chr3 105161224 105161263 -54438520 + (CCCA)n Simple_repeat Simple_repeat 2 40 0 2 1387 225 0 0 0 chr3 105161340 105161365 -54438418 + (TGG)n Simple_repeat Simple_repeat 2 26 0 2 1387 375 23 0 0 chr3 105161371 105161415 -54438368 + (TG)n Simple_repeat Simple_repeat 2 45 0 2 1387 491 318 192 0 chr3 105161428 105161648 -54438135 - B4A SINE B4 -18 274 13 2 1387 918 274 44 32 chr3 105161699 105162038 -54437745 + L1MB5 LINE L1 5750 6092 -82 2 1387 693 252 107 99 chr3 105163549 105163583 -54436200 - RMER4B LTR ERVK -134 451 420 2 1387 3440 30 5 0 chr3 105163583 105163977 -54435806 - MTA_Mm LTR MaLR 0 396 1 2 1387 693 252 107 99 chr3 105163977 105164307 -54435476 - RMER4B LTR ERVK -166 419 84 2 1387 378 0 0 0 chr3 105164307 105164349 -54435434 + (CATAA)n Simple_repeat Simple_repeat 5 46 0 2 1387 456 311 141 53 chr3 105164378 105164888 -54434895 - L1MEe LINE L1 -3168 2978 2424 2 1387 340 319 77 27 chr3 105165097 105165319 -54434464 - L1MEe LINE L1 -3985 2181 1949 2 1387 378 325 154 3 chr3 105165423 105165716 -54434067 - L1MEe LINE L1 -4422 1744 1408 2 1387 239 152 14 57 chr3 105165939 105166009 -54433774 + T-rich Low_complexity Low_complexity 5 71 0 2 1387 359 381 17 29 chr3 105166439 105166677 -54433106 - L1MEe LINE L1 -5319 817 583 2 1387 485 231 36 72 chr3 105166900 105167081 -54432702 - L1MC3 LINE L1 -108 7677 7533 2 1387 292 197 91 0 chr3 105167138 105167204 -54432579 - ID4 SINE ID -10 73 2 2 1387 270 297 0 0 chr3 105167225 105167299 -54432484 - L1MC3 LINE L1 -351 7434 7361 2 1387 333 0 0 0 chr3 105170389 105170426 -54429357 + (TG)n Simple_repeat Simple_repeat 2 38 0 2 1387 1476 221 83 6 chr3 105171466 105171803 -54427980 + ORR1D2 LTR MaLR 1 363 -7 2 1387 310 318 100 25 chr3 105172043 105172243 -54427540 - MIR SINE MIR -36 226 12 2 1387 459 52 0 0 chr3 105173148 105173206 -54426577 + (GA)n Simple_repeat Simple_repeat 2 59 0 2 1387 3093 71 28 5 chr3 105173960 105174382 -54425401 + L1_Mus3 LINE L1 6205 6636 -2 2 1387 446 207 0 0 chr3 105176546 105176628 -54423155 + ID4 SINE ID 2 83 0 2 1387 248 0 0 30 chr3 105177256 105177289 -54422494 + (GGGTG)n Simple_repeat Simple_repeat 5 36 0 2 1387 417 346 0 0 chr3 105179716 105179823 -54419960 + PB1D10 SINE Alu 6 112 -5 2 1387 207 0 0 0 chr3 105179823 105179846 -54419937 + (CCA)n Simple_repeat Simple_repeat 1 23 0 2 1387 266 315 39 16 chr3 105180677 105180806 -54418977 - L1MC4 LINE L1 -479 7563 7432 2 1387 360 43 0 0 chr3 105181002 105181048 -54418735 + (TG)n Simple_repeat Simple_repeat 2 47 0 2 1387 830 268 0 18 chr3 105181053 105181224 -54418559 - B3A SINE B2 -30 168 1 2 1387 237 264 21 21 chr3 105181240 105181333 -54418450 - L1MC4 LINE L1 -968 7074 6982 2 1387 1712 229 21 26 chr3 105181452 105181833 -54417950 + MTC LTR MaLR 43 421 0 2 1387 234 0 0 0 chr3 105181934 105181960 -54417823 + (TG)n Simple_repeat Simple_repeat 1 26 0 2 1387 399 68 0 0 chr3 105181960 105182019 -54417764 + (GA)n Simple_repeat Simple_repeat 2 60 0 2 1387 189 74 0 0 chr3 105182030 105182057 -54417726 + (CA)n Simple_repeat Simple_repeat 1 27 0 2 1387 651 323 86 74 chr3 105182586 105183118 -54416665 + MLT1E1A LTR MaLR 14 666 -14 2 1387 341 279 242 44 chr3 105183411 105183659 -54416124 - MLT1H2 LTR MaLR 0 489 193 2 1387 278 293 23 11 chr3 105183830 105183941 -54415842 + MIRb SINE MIR 147 258 -4 2 1387 238 212 0 43 chr3 105184066 105184135 -54415648 + MADE2 DNA Mariner 14 79 -1 2 1387 324 120 0 0 chr3 105184811 105184861 -54414922 + (CAG)n Simple_repeat Simple_repeat 1 50 0 2 1387 285 234 94 94 chr3 105184986 105185146 -54414637 + RMER15 LTR ERVL 2 161 -414 2 1387 321 265 155 22 chr3 105185165 105185378 -54414405 + RMER15 LTR ERVL 300 561 -14 2 1387 22 0 0 0 chr3 105185447 105185469 -54414314 + AT_rich Low_complexity Low_complexity 1 22 0 2 1387 425 250 9 115 chr3 105185558 105185671 -54414112 + PB1D10 SINE Alu 1 101 -16 2 1387 196 30 61 0 chr3 105185673 105185706 -54414077 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 2 1387 1145 126 163 15 chr3 105185998 105186200 -54413583 - Lx2 LINE L1 -1 6996 6765 2 1387 7040 106 40 1 chr3 105186189 105187620 -54412163 - Lx2 LINE L1 -352 6645 5160 2 1387 6839 80 13 21 chr3 105187597 105189259 -54410524 - L1VL4 LINE L1 -1725 1834 195 2 1387 407 234 55 62 chr3 105189834 105189980 -54409803 - MIR SINE MIR -3 259 115 2 1387 531 286 16 82 chr3 105190980 105191163 -54408620 - B4A SINE B4 -120 172 2 2 1387 1463 113 5 9 chr3 105193090 105193313 -54406470 - Lx2 LINE L1 -1 6996 6775 2 1387 6569 113 71 4 chr3 105193313 105194475 -54405308 - Lx2 LINE L1 -354 6643 5413 2 1387 874 224 20 65 chr3 105194975 105195176 -54404607 - B3A SINE B2 0 198 7 2 1387 441 0 0 0 chr3 105195224 105195273 -54404510 + (TG)n Simple_repeat Simple_repeat 1 49 0 2 1387 333 0 0 0 chr3 105195566 105195603 -54404180 + (GA)n Simple_repeat Simple_repeat 2 38 0 2 1387 399 41 0 0 chr3 105195784 105195833 -54403950 + (GA)n Simple_repeat Simple_repeat 2 50 0 2 1387 255 378 20 74 chr3 105196348 105196551 -54403232 + LTR16A LTR ERVL 260 451 0 2 1387 204 179 0 0 chr3 105196922 105196961 -54402822 + (TG)n Simple_repeat Simple_repeat 2 40 0 2 1387 228 356 82 33 chr3 105197480 105197602 -54402181 - L2b LINE L2 -224 3151 3024 2 1387 435 38 0 0 chr3 105197699 105197752 -54402031 + (TGG)n Simple_repeat Simple_repeat 1 53 0 3 1387 254 325 43 59 chr3 105198680 105198802 -54400981 - MIRc SINE MIR -138 130 14 3 1387 1117 38 0 29 chr3 105200864 105201001 -54398782 + B1_Mus1 SINE Alu 2 134 -14 3 1387 1212 93 0 0 chr3 105201001 105201173 -54398610 + (GAA)n Simple_repeat Simple_repeat 1 172 0 3 1387 633 61 0 0 chr3 105201209 105201291 -54398492 + (GGA)n Simple_repeat Simple_repeat 3 84 0 3 1387 424 281 44 0 chr3 105201531 105201645 -54398138 - L2b LINE L2 0 3375 3257 3 1387 1411 130 9 36 chr3 105202021 105202244 -54397539 - URR1B DNA MER1_type 0 225 9 3 1387 423 0 0 0 chr3 105203052 105203099 -54396684 + (TG)n Simple_repeat Simple_repeat 1 47 0 3 1387 671 0 13 0 chr3 105203623 105203702 -54396081 + (GA)n Simple_repeat Simple_repeat 1 80 0 3 1387 191 360 52 9 chr3 105203936 105204051 -54395732 - L3 LINE CR1 -98 4391 4272 3 1387 415 290 120 26 chr3 105204163 105204354 -54395429 + B3 SINE B2 4 212 -4 3 1387 22 0 0 0 chr3 105204354 105204376 -54395407 + AT_rich Low_complexity Low_complexity 1 22 0 3 1387 367 349 32 90 chr3 105204995 105205328 -54394455 + MLT2B1 LTR ERVL 122 539 -15 3 1387 373 250 34 56 chr3 105205453 105205631 -54394152 + L1ME3A LINE L1 5999 6172 -1 3 1387 506 340 25 55 chr3 105205634 105205836 -54393947 - MIRb SINE MIR -70 198 3 3 1387 562 303 0 14 chr3 105205915 105206062 -54393721 + B4 SINE B4 70 214 -78 3 1387 456 130 0 0 chr3 105206064 105206156 -54393627 + (TC)n Simple_repeat Simple_repeat 1 92 0 3 1387 327 150 0 0 chr3 105206235 105206295 -54393488 + (CA)n Simple_repeat Simple_repeat 1 60 0 3 1387 330 91 0 0 chr3 105207024 105207079 -54392704 + (CA)n Simple_repeat Simple_repeat 1 55 0 3 1387 192 143 0 0 chr3 105207546 105207588 -54392195 + (A)n Simple_repeat Simple_repeat 1 42 0 3 1387 217 315 75 11 chr3 105207639 105207732 -54392051 + L2c LINE L2 3065 3163 -224 3 1387 213 308 31 0 chr3 105207852 105207917 -54391866 + MIR SINE MIR 109 175 -87 3 1387 709 229 0 21 chr3 105208571 105208714 -54391069 + ID_B1 SINE B4 84 223 -1 3 1387 432 0 0 0 chr3 105209506 105209554 -54390229 + (TG)n Simple_repeat Simple_repeat 2 49 0 3 1387 525 165 0 0 chr3 105210093 105210190 -54389593 + (TG)n Simple_repeat Simple_repeat 1 97 0 3 1387 806 257 74 19 chr3 105211865 105212135 -54387648 + B4A SINE B4 1 285 -7 3 1387 288 318 103 25 chr3 105212240 105212460 -54387323 - MIR SINE MIR -11 251 22 3 1387 1078 102 27 150 chr3 105212646 105212866 -54386917 + B2_Mm2 SINE B2 1 193 -2 3 1387 341 370 90 85 chr3 105212880 105213234 -54386549 + ORR1E LTR MaLR 2 357 -2 3 1387 380 0 60 0 chr3 105213612 105213662 -54386121 + (CATAT)n Simple_repeat Simple_repeat 3 55 0 3 1387 23 0 0 0 chr3 105213981 105214004 -54385779 + AT_rich Low_complexity Low_complexity 1 23 0 3 1387 818 255 62 19 chr3 105216101 105216309 -54383474 - ID_B1 SINE B4 0 224 8 3 1387 360 0 0 0 chr3 105216340 105216380 -54383403 + (TG)n Simple_repeat Simple_repeat 2 41 0 3 1387 381 277 135 0 chr3 105216380 105216521 -54383262 - B2_Mm2 SINE B2 -35 160 1 3 1387 213 296 23 0 chr3 105216671 105216715 -54383068 - ID4_ SINE ID -11 72 28 3 1387 367 244 11 43 chr3 105216745 105216839 -54382944 - PB1D10 SINE Alu -5 112 22 3 1387 230 200 73 62 chr3 105216845 105216941 -54382842 + RMER17A LTR ERVK 369 465 -286 3 1387 181 125 62 0 chr3 105217034 105217066 -54382717 - L2a LINE L2 0 3426 3393 3 1387 368 347 90 30 chr3 105217556 105217915 -54381868 - L2b LINE L2 -114 3273 2892 3 1387 287 169 0 14 chr3 105218057 105218129 -54381654 + GA-rich Low_complexity Low_complexity 2 72 0 3 1387 738 264 151 0 chr3 105218394 105218606 -54381177 - B4A SINE B4 -48 244 1 3 1387 313 277 151 14 chr3 105218661 105218800 -54380983 + L1ME1 LINE L1 6019 6176 -3 3 1387 194 213 10 69 chr3 105218927 105219028 -54380755 + GA-rich Low_complexity Low_complexity 2 96 0 3 1387 228 231 0 19 chr3 105219320 105219373 -54380410 + ID_B1 SINE B4 109 160 -64 3 1387 370 336 35 43 chr3 105219378 105219493 -54380290 - B4A SINE B4 -165 127 14 3 1387 1243 239 14 83 chr3 105219551 105219912 -54379871 + MTE2a LTR MaLR 1 336 -43 3 1387 1310 228 70 107 chr3 105219920 105220429 -54379354 + MT2B LTR ERVL 1 549 -52 3 1387 186 118 0 0 chr3 105220429 105220463 -54379320 + (TA)n Simple_repeat Simple_repeat 1 34 0 3 1387 1310 219 29 106 chr3 105220463 105220518 -54379265 + MT2B LTR ERVL 550 600 -1 3 1387 201 288 0 0 chr3 105221246 105221305 -54378478 + MIR SINE MIR 185 243 -19 3 1387 260 321 47 116 chr3 105221362 105221489 -54378294 - L2a LINE L2 -14 3412 3290 3 1387 1501 188 132 9 chr3 105221489 105221822 -54377961 + ORR1D1 LTR MaLR 1 374 0 3 1387 260 321 47 116 chr3 105221822 105221884 -54377899 - L2a LINE L2 -137 3289 3236 3 1387 426 39 0 0 chr3 105221887 105221939 -54377844 + (GGAA)n Simple_repeat Simple_repeat 1 52 0 3 1387 3612 143 20 44 chr3 105222123 105222862 -54376921 + RMER6A LTR ERVK 1 756 0 3 1387 920 256 131 15 chr3 105222862 105223133 -54376650 - MLT1A0 LTR MaLR -51 314 12 3 1387 630 204 96 0 chr3 105223291 105223448 -54376335 - MER2 DNA MER2_type -134 211 40 3 1387 639 152 38 9 chr3 105223641 105223747 -54376036 + RMER20B LTR ERVK 1 109 -518 3 1387 1707 172 52 158 chr3 105223747 105224127 -54375656 - RLTR23 LTR ERV1 0 430 101 3 1387 225 0 0 0 chr3 105224127 105224152 -54375631 + (GTTTG)n Simple_repeat Simple_repeat 2 26 0 3 1387 1707 172 52 158 chr3 105224152 105224247 -54375536 - RLTR23 LTR ERV1 -330 100 5 3 1387 1616 196 139 108 chr3 105224218 105224744 -54375039 + RMER20B LTR ERVK 86 627 0 3 1387 1052 229 0 82 chr3 105224984 105225227 -54374556 - ID_B1 SINE B4 0 224 2 3 1387 911 213 28 17 chr3 105225364 105225525 -54374258 + B3 SINE B2 1 166 -50 3 1387 306 0 0 0 chr3 105225525 105225559 -54374224 + (TC)n Simple_repeat Simple_repeat 1 34 0 3 1387 911 213 28 17 chr3 105225559 105225574 -54374209 + B3 SINE B2 167 179 -37 3 1387 278 312 37 12 chr3 105225631 105225712 -54374071 - ID4_ SINE ID 0 83 1 3 1387 188 217 0 32 chr3 105225719 105225781 -54374002 + T-rich Low_complexity Low_complexity 2 61 0 3 1387 372 140 0 0 chr3 105225816 105225873 -54373910 - B1F SINE Alu -22 127 71 3 1387 422 115 0 0 chr3 105225874 105225935 -54373848 - B1F SINE Alu -22 127 67 3 1387 364 161 0 0 chr3 105225936 105225992 -54373791 - B1F SINE Alu -26 123 68 3 1387 299 233 0 0 chr3 105225962 105226022 -54373761 - B1_Mur3 SINE Alu -23 126 67 3 1387 413 131 0 0 chr3 105226019 105226080 -54373703 - B1F SINE Alu -22 127 67 3 1387 359 164 0 0 chr3 105226048 105226109 -54373674 - B1_Mur3 SINE Alu -22 127 67 3 1387 425 227 34 0 chr3 105226106 105226194 -54373589 - B1F SINE Alu -22 127 37 3 1387 245 358 35 28 chr3 105226225 105226366 -54373417 + MIR SINE MIR 4 145 -117 3 1387 304 340 76 83 chr3 105226788 105227089 -54372694 - L2c LINE L2 -46 3329 3057 3 1387 534 143 0 0 chr3 105227299 105227390 -54372393 + (GA)n Simple_repeat Simple_repeat 2 92 0 3 1387 181 0 33 33 chr3 105227827 105227857 -54371926 + (TAAAA)n Simple_repeat Simple_repeat 2 31 0 3 1387 389 327 147 18 chr3 105229814 105230038 -54369745 + RMER15 LTR ERVL 280 532 -43 3 1387 226 256 21 72 chr3 105230311 105230408 -54369375 + MLT1D LTR MaLR 395 486 -19 3 1387 740 275 0 42 chr3 105230773 105230963 -54368820 - B3A SINE B2 -16 182 1 3 1387 241 305 104 10 chr3 105232688 105232784 -54366999 - MIR3 SINE MIR -44 164 60 3 1387 2589 83 6 0 chr3 105232878 105233203 -54366580 - ORR1A2 LTR MaLR 0 327 1 3 1387 684 190 79 14 chr3 105233629 105233768 -54366015 + B1_Mur1 SINE Alu 1 148 -1 3 1387 484 231 9 19 chr3 105233840 105233946 -54365837 - PB1D7 SINE Alu -1 119 15 3 1387 259 283 59 42 chr3 105234112 105234230 -54365553 + L1MC LINE L1 5616 5735 -2147 3 1387 25 0 0 0 chr3 105235098 105235123 -54364660 + GC_rich Low_complexity Low_complexity 1 25 0 3 1387 242 348 118 24 chr3 105235497 105235704 -54364079 - MIR SINE MIR -19 243 19 3 1387 579 53 0 0 chr3 105236311 105236386 -54363397 + (TC)n Simple_repeat Simple_repeat 2 76 0 3 1387 335 274 107 7 chr3 105237515 105237661 -54362122 + MER5A DNA MER1_type 1 164 -2 3 1387 461 277 0 0 chr3 105239831 105239925 -54359858 + RSINE1 SINE B4 4 97 -68 3 1387 268 300 103 31 chr3 105240074 105240312 -54359471 + MIR SINE MIR 13 261 -1 3 1387 851 124 7 33 chr3 105240603 105240753 -54359030 + URR1B DNA MER1_type 80 225 0 3 1387 191 219 24 0 chr3 105241110 105241151 -54358632 + MIR SINE MIR 128 169 -93 3 1387 424 338 82 17 chr3 105242175 105242407 -54357376 + L2 LINE L2 2600 2846 -573 3 1387 823 273 83 40 chr3 105242685 105242963 -54356820 + B4A SINE B4 3 292 0 3 1387 446 248 53 53 chr3 105243196 105243328 -54356455 - RSINE1 SINE B4 -32 133 2 3 1387 333 0 0 0 chr3 105243447 105243484 -54356299 + (CA)n Simple_repeat Simple_repeat 2 38 0 3 1387 465 19 0 0 chr3 105243484 105243537 -54356246 + (GA)n Simple_repeat Simple_repeat 2 55 0 3 1387 1492 196 161 97 chr3 105243545 105243979 -54355804 - MT2A LTR ERVL -71 462 1 3 1387 423 0 0 0 chr3 105244087 105244134 -54355649 + (TCCC)n Simple_repeat Simple_repeat 3 49 0 3 1387 486 0 0 0 chr3 105245335 105245389 -54354394 + (TG)n Simple_repeat Simple_repeat 1 54 0 3 1387 461 322 34 28 chr3 105245510 105245689 -54354094 + MER3 DNA MER1_type 17 196 -13 3 1387 562 327 192 27 chr3 105245862 105246236 -54353547 - MLT1J2 LTR MaLR 0 448 13 3 1387 2192 190 25 25 chr3 105246361 105246761 -54353022 + MTD LTR MaLR 18 417 -2 4 1387 389 36 8 17 chr3 105247889 105247947 -54351836 + MTB LTR MaLR 312 400 0 4 1387 367 292 0 20 chr3 105247947 105248043 -54351740 + B4A SINE B4 199 292 0 4 1387 272 91 23 0 chr3 105248093 105248137 -54351646 + (TA)n Simple_repeat Simple_repeat 1 45 0 4 1387 229 213 22 66 chr3 105248175 105248311 -54351472 + (TATAA)n Simple_repeat Simple_repeat 3 132 0 4 1387 200 286 143 0 chr3 105248682 105248752 -54351031 - MIRb SINE MIR -169 99 20 4 1387 22 0 0 0 chr3 105248951 105248973 -54350810 + AT_rich Low_complexity Low_complexity 1 22 0 4 1387 495 0 0 0 chr3 105249699 105249754 -54350029 + (CCA)n Simple_repeat Simple_repeat 2 56 0 4 1387 853 256 49 22 chr3 105250362 105250586 -54349197 + B4A SINE B4 1 230 -62 4 173 1874 144 30 171 chr3 105250723 105251157 -54348626 + ORR1D1 LTR MaLR 1 373 -1 4 1388 186 43 0 0 chr3 105251380 105251403 -54348380 + (A)n Simple_repeat Simple_repeat 1 23 0 4 1388 377 216 0 19 chr3 105251400 105251504 -54348279 + GA-rich Low_complexity Low_complexity 2 103 0 4 1388 249 231 8 23 chr3 105251699 105251832 -54347951 + (TCTCTG)n Simple_repeat Simple_repeat 5 135 0 4 1388 347 223 10 41 chr3 105252090 105252188 -54347595 - MIR SINE MIR -120 142 48 4 1388 375 23 0 0 chr3 105253129 105253173 -54346610 + (GA)n Simple_repeat Simple_repeat 2 45 0 4 1388 218 312 13 25 chr3 105254720 105254878 -54344905 + C-rich Low_complexity Low_complexity 4 159 0 4 1388 342 0 0 0 chr3 105254976 105255014 -54344769 + (CA)n Simple_repeat Simple_repeat 2 39 0 4 1388 24 0 0 0 chr3 105255210 105255234 -54344549 + GC_rich Low_complexity Low_complexity 1 24 0 4 1388 297 75 0 0 chr3 105255389 105255429 -54344354 + (CGG)n Simple_repeat Simple_repeat 3 42 0 4 1388 22 0 0 0 chr3 105255593 105255615 -54344168 + GC_rich Low_complexity Low_complexity 1 22 0 4 1388 189 0 0 0 chr3 105257082 105257103 -54342680 + (T)n Simple_repeat Simple_repeat 1 21 0 4 1388 323 269 107 25 chr3 105258504 105258626 -54341157 - MIR SINE MIR -55 153 22 4 1388 242 258 19 76 chr3 105260929 105261034 -54338749 - ORR1A2 LTR MaLR -140 187 89 4 1388 186 43 0 0 chr3 105263408 105263431 -54336352 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 4 1388 753 230 0 0 chr3 105264197 105264556 -54335227 + (CA)n Simple_repeat Simple_repeat 1 359 0 4 1388 216 0 0 0 chr3 105264740 105264764 -54335019 + (CAAAA)n Simple_repeat Simple_repeat 3 26 0 4 1388 623 308 70 4 chr3 105264997 105265225 -54334558 - MIRb SINE MIR -21 247 5 4 1388 204 238 121 45 chr3 105267888 105267954 -54331829 - L2a LINE L2 -1 3425 3355 4 1388 189 316 113 95 chr3 105268501 105268669 -54331114 + L2 LINE L2 2892 3062 -357 4 1388 565 240 178 57 chr3 105268843 105269090 -54330693 + B4A SINE B4 2 278 -14 4 1388 242 240 0 96 chr3 105271629 105271712 -54328071 + ID4_ SINE ID 2 76 -7 4 1388 234 0 0 0 chr3 105272756 105272782 -54327001 + (TTA)n Simple_repeat Simple_repeat 2 27 0 4 1388 183 337 59 24 chr3 105273442 105273527 -54326256 - L2c LINE L2 -188 3199 3112 4 1388 1151 148 107 10 chr3 105273606 105273811 -54325972 + URR1A DNA MER1_type 1 225 -1 4 1388 182 311 0 0 chr3 105274145 105274190 -54325593 + L3b LINE CR1 193 237 -245 4 1388 181 255 21 0 chr3 105274477 105274524 -54325259 + L3 LINE CR1 776 823 -3666 4 1388 404 344 50 6 chr3 105275805 105275966 -54323817 + MIR3 SINE MIR 16 183 -25 4 1388 981 63 0 0 chr3 105277210 105277352 -54322431 + (TC)n Simple_repeat Simple_repeat 1 142 0 4 1388 874 147 7 7 chr3 105277853 105277990 -54321793 + B1_Mur4 SINE Alu 13 149 -1 4 1388 189 171 0 0 chr3 105277990 105278025 -54321758 + GA-rich Low_complexity Low_complexity 1 35 0 4 1388 682 146 12 0 chr3 105278024 105278195 -54321588 + (TG)n Simple_repeat Simple_repeat 1 173 0 4 1388 384 22 0 0 chr3 105278212 105278257 -54321526 + (GA)n Simple_repeat Simple_repeat 1 45 0 4 1388 186 171 0 0 chr3 105278464 105278505 -54321278 + GA-rich Low_complexity Low_complexity 3 43 0 4 1388 1401 241 49 54 chr3 105279933 105280302 -54319481 + MTEa LTR MaLR 1 367 -12 4 1388 369 328 113 20 chr3 105280492 105280707 -54319076 - MIR SINE MIR -21 241 8 4 1388 254 289 32 129 chr3 105280785 105281017 -54318766 - MLT1H LTR MaLR -4 591 378 4 1388 312 83 0 0 chr3 105281052 105281100 -54318683 + (CAGAG)n Simple_repeat Simple_repeat 4 51 0 4 1388 292 304 90 65 chr3 105281177 105281332 -54318451 - MLT1H LTR MaLR -379 170 12 4 1388 235 223 115 69 chr3 105281704 105281834 -54317949 + MIRb SINE MIR 19 154 -114 4 1388 537 88 0 0 chr3 105284372 105284452 -54315331 + (TC)n Simple_repeat Simple_repeat 2 81 0 4 1388 264 30 0 0 chr3 105284447 105284480 -54315303 + (TG)n Simple_repeat Simple_repeat 2 34 0 4 1388 342 0 0 0 chr3 105285311 105285349 -54314434 + (CA)n Simple_repeat Simple_repeat 1 38 0 4 1388 466 296 134 26 chr3 105285630 105285824 -54313959 - MER58A DNA MER1_type -1 223 9 4 1388 206 238 35 17 chr3 105286383 105286447 -54313336 + MIR SINE MIR 88 155 -113 4 1388 292 279 97 18 chr3 105287179 105287292 -54312491 + MIR SINE MIR 111 232 -30 4 1388 328 278 140 91 chr3 105287602 105287788 -54311995 - LTR78 LTR ERV1 -14 1290 1096 4 1388 635 262 20 7 chr3 105288862 105289008 -54310775 - RSINE1 SINE B4 -17 148 1 4 1388 234 280 137 46 chr3 105289018 105289149 -54310634 + MIR SINE MIR 104 246 -16 4 1388 393 271 37 9 chr3 105290233 105290341 -54309442 + L2b LINE L2 3265 3375 0 4 1388 370 277 9 11 chr3 105290998 105291133 -54308650 + Charlie9 DNA MER1_type 3 136 -2621 4 1388 559 85 10 21 chr3 105291151 105291247 -54308536 + (TAGA)n Simple_repeat Simple_repeat 1 95 0 4 1388 238 333 42 84 chr3 105291712 105291879 -54307904 - MIRc SINE MIR -47 221 62 4 1388 326 310 92 31 chr3 105293425 105293588 -54306195 + MIRc SINE MIR 79 251 -17 4 1388 678 211 64 25 chr3 105293617 105293821 -54305962 + L1M2 LINE L1 2121 2332 -3811 4 1388 264 170 0 0 chr3 105294570 105294623 -54305160 + CT-rich Low_complexity Low_complexity 2 54 0 4 1388 441 0 0 0 chr3 105294623 105294672 -54305111 + (CA)n Simple_repeat Simple_repeat 1 49 0 4 1388 191 253 33 98 chr3 105294899 105294991 -54304792 - MIRc SINE MIR -168 100 15 4 1388 296 231 62 0 chr3 105300008 105300073 -54299710 - MIRm SINE MIR -1 275 207 4 1388 252 0 0 0 chr3 105300822 105300850 -54298933 + (GA)n Simple_repeat Simple_repeat 1 28 0 4 1388 1015 227 114 10 chr3 105302013 105302302 -54297481 - Tigger7 DNA MER2_type -1 2490 2172 4 1388 789 242 192 68 chr3 105302321 105302644 -54297139 + MTEa LTR MaLR 13 375 -4 4 1388 831 336 92 7 chr3 105302667 105302949 -54296834 - Tigger7 DNA MER2_type -2183 308 3 4 1388 246 331 101 48 chr3 105302964 105303132 -54296651 - MIRb SINE MIR -73 195 19 4 1388 309 118 0 0 chr3 105303139 105303190 -54296593 + (CA)n Simple_repeat Simple_repeat 1 51 0 4 1388 290 256 24 0 chr3 105305537 105305619 -54294164 + L1MB2 LINE L1 5920 6003 -168 4 1388 6499 82 7 3 chr3 105305835 105306699 -54293084 - L1_Mus4 LINE L1 -2 6634 5768 4 1388 417 299 8 0 chr3 105306793 105306910 -54292873 + MLT1D LTR MaLR 381 498 -7 4 1388 408 299 98 45 chr3 105307075 105307299 -54292484 - MIRb SINE MIR -23 245 10 4 1388 836 162 0 57 chr3 105307611 105307768 -54292015 + B1_Mur1 SINE Alu 2 149 0 4 1388 741 235 33 29 chr3 105307966 105308152 -54291631 + ID_B1 SINE B4 81 265 -27 4 1388 462 325 20 7 chr3 105310371 105310523 -54289260 - L2a LINE L2 -11 3415 3262 4 1388 427 297 109 76 chr3 105310553 105310856 -54288927 - MTE2b LTR MaLR -9 370 19 4 1388 268 274 40 14 chr3 105310878 105310952 -54288831 - MLT2B2 LTR ERVL -415 100 25 4 1388 217 151 58 0 chr3 105311009 105311095 -54288688 + (CAGGG)n Simple_repeat Simple_repeat 4 94 0 4 1388 388 253 41 0 chr3 105311128 105311298 -54288485 + (TAGGG)n Simple_repeat Simple_repeat 3 179 0 4 1388 459 192 172 0 chr3 105311732 105311831 -54287952 + B1F SINE Alu 26 141 -8 4 1388 1004 257 178 3 chr3 105312071 105312391 -54287392 - MTEa LTR MaLR 0 379 4 4 1388 190 196 78 0 chr3 105312587 105312638 -54287145 + L2 LINE L2 1977 2031 -1388 4 1388 612 0 0 0 chr3 105312885 105312953 -54286830 + (GA)n Simple_repeat Simple_repeat 1 68 0 4 1388 182 379 13 103 chr3 105312983 105313139 -54286644 + MIRb SINE MIR 115 256 -12 4 1388 203 338 0 14 chr3 105313521 105313590 -54286193 + MIR3 SINE MIR 109 176 -32 4 1388 490 299 117 19 chr3 105314982 105315187 -54284596 - L2a LINE L2 -18 3408 3184 4 1388 396 181 0 0 chr3 105315767 105315850 -54283933 + (CA)n Simple_repeat Simple_repeat 2 84 0 4 1388 801 229 65 0 chr3 105315870 105316084 -54283699 - L1MA4A LINE L1 -365 5938 5711 4 1388 439 207 117 15 chr3 105316090 105316227 -54283556 + L1M3 LINE L1 5539 5689 -500 4 1388 504 228 106 68 chr3 105316258 105316390 -54283393 - B1F SINE Alu 0 149 13 4 1388 229 303 117 40 chr3 105316599 105316782 -54283001 + MIRb SINE MIR 63 253 -9 4 1388 182 252 173 10 chr3 105318936 105319040 -54280743 - MIRc SINE MIR -123 145 25 4 1388 373 338 104 6 chr3 105319153 105319317 -54280466 - MIRb SINE MIR -58 210 31 4 1388 344 373 62 17 chr3 105319318 105319558 -54280225 - MIRb SINE MIR -8 260 10 4 1388 627 192 0 0 chr3 105319617 105319794 -54279989 + (TGGA)n Simple_repeat Simple_repeat 2 178 0 4 1388 215 191 15 0 chr3 105319807 105319875 -54279908 + (TGGA)n Simple_repeat Simple_repeat 4 72 0 4 1388 224 303 61 0 chr3 105320598 105320664 -54279119 + MIR SINE MIR 56 125 -83 4 1388 575 214 0 10 chr3 105320847 105320951 -54278832 - PB1D7 SINE Alu -7 113 11 5 1388 6747 115 48 3 chr3 105321237 105322262 -54277521 - Lx4A LINE L1 -1 7057 5987 5 1388 245 333 40 0 chr3 105322262 105322337 -54277446 - LTR33A_ LTR ERVL -350 181 104 5 1388 1620 0 0 0 chr3 105323138 105323318 -54276465 + (TCTCCC)n Simple_repeat Simple_repeat 1 180 0 5 1388 1448 43 43 0 chr3 105325812 105325835 -54273948 - B2_Mm1a SINE B2 -1 192 162 5 1388 243 0 0 0 chr3 105325835 105325862 -54273921 + (TTTA)n Simple_repeat Simple_repeat 3 29 0 5 1388 1448 43 43 0 chr3 105325862 105326022 -54273761 - B2_Mm1a SINE B2 -32 161 2 5 1388 363 313 169 15 chr3 105326466 105326797 -54272986 - L1MC LINE L1 -1913 4233 3852 5 1388 256 281 92 38 chr3 105326818 105327003 -54272780 - L1MEc LINE L1 -2591 4350 4156 5 1388 555 306 75 0 chr3 105327044 105327217 -54272566 - B3A SINE B2 -6 192 7 5 1388 418 287 0 29 chr3 105327277 105327381 -54272402 - RSINE1 SINE B4 0 165 65 5 1388 1111 296 128 51 chr3 105327514 105329682 -54270101 - L1MEc LINE L1 -2995 3946 1740 5 1388 723 298 129 4 chr3 105329758 105330014 -54269769 - B4A SINE B4 -3 289 2 5 1388 446 261 102 98 chr3 105330024 105330270 -54269513 - L1MEc LINE L1 -4857 1565 1317 5 1388 518 292 43 7 chr3 105330290 105330428 -54269355 - B1F1 SINE Alu -1 148 6 5 1388 932 153 0 6 chr3 105330434 105330605 -54269178 + CT-rich Low_complexity Low_complexity 2 171 0 5 1388 1183 223 213 18 chr3 105330749 105331087 -54268696 - MTD LTR MaLR -7 412 9 5 1388 250 319 32 40 chr3 105331550 105331674 -54268109 - MIR SINE MIR -106 156 34 5 1388 245 264 226 21 chr3 105331669 105331762 -54268021 + L2c LINE L2 3276 3387 0 5 1388 283 337 124 17 chr3 105333284 105333462 -54266321 - MIR SINE MIR -13 249 53 5 1388 639 75 28 9 chr3 105334128 105334235 -54265548 + (GGAA)n Simple_repeat Simple_repeat 1 109 0 5 1388 441 167 48 0 chr3 105334523 105334607 -54265176 - B4A SINE B4 -81 211 124 5 1388 382 349 0 7 chr3 105334925 105335078 -54264705 + RSINE1 SINE B4 1 152 -13 5 1388 268 333 98 53 chr3 105335290 105335423 -54264360 + MIR SINE MIR 107 245 -17 5 1388 599 262 76 37 chr3 105336007 105336238 -54263545 - MLT1F2 LTR MaLR -6 648 372 5 1388 180 0 0 0 chr3 105337189 105337209 -54262574 + (TCC)n Simple_repeat Simple_repeat 2 21 0 5 1388 405 0 0 0 chr3 105337209 105337254 -54262529 + (TTTG)n Simple_repeat Simple_repeat 1 45 0 5 1388 457 181 0 35 chr3 105337254 105337340 -54262443 - B1_Mur4 SINE Alu -13 137 55 5 1388 1601 219 66 75 chr3 105337359 105337660 -54262123 - RCHARR1 DNA MER1_type 0 974 667 5 1388 549 237 87 92 chr3 105337660 105337855 -54261928 - B3A SINE B2 -2 196 3 5 1388 1601 219 66 75 chr3 105337855 105337995 -54261788 - RCHARR1 DNA MER1_type -308 666 532 5 1388 234 0 0 0 chr3 105337995 105338021 -54261762 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 5 1388 1601 219 66 75 chr3 105338021 105338081 -54261702 - RCHARR1 DNA MER1_type -443 531 477 5 1388 403 333 6 53 chr3 105338186 105338357 -54261426 - RSINE1 SINE B4 0 165 3 5 1388 1070 260 128 5 chr3 105338358 105338799 -54260984 - RCHARR1 DNA MER1_type -477 497 3 5 1388 411 113 0 0 chr3 105338825 105338887 -54260896 + (TG)n Simple_repeat Simple_repeat 1 62 0 5 1388 711 319 77 15 chr3 105338912 105339186 -54260597 - B4 SINE B4 -1 291 1 5 1388 182 129 32 0 chr3 105339448 105339479 -54260304 + MIR SINE MIR 9 40 -222 5 1388 988 100 0 48 chr3 105339549 105339696 -54260087 + B1_Mus1 SINE Alu 1 140 -8 5 1388 462 18 0 0 chr3 105339696 105339751 -54260032 + (CA)n Simple_repeat Simple_repeat 2 56 0 5 1388 371 241 36 0 chr3 105339976 105340059 -54259724 - PB1D7 SINE Alu -34 86 1 5 1388 5552 91 8 13 chr3 105340345 105341125 -54258658 + L1_Mus3 LINE L1 5863 6638 0 5 1388 189 0 0 0 chr3 105342970 105342991 -54256792 + (TG)n Simple_repeat Simple_repeat 2 22 0 5 1388 508 294 82 64 chr3 105343124 105343361 -54256422 - MIRb SINE MIR -11 257 13 5 1388 446 270 48 0 chr3 105344004 105344130 -54255653 + ID_B1 SINE B4 90 221 -3 5 1388 282 309 11 11 chr3 105344976 105345071 -54254712 - MIRb SINE MIR -2 266 172 5 1388 210 354 181 39 chr3 105345086 105345268 -54254515 - MIRm SINE MIR 0 276 69 5 1388 219 342 0 0 chr3 105345276 105345352 -54254431 + PB1 SINE Alu 2 77 -50 5 1388 207 0 0 0 chr3 105345957 105345980 -54253803 + (CA)n Simple_repeat Simple_repeat 1 23 0 5 1388 1124 268 101 39 chr3 105347511 105347868 -54251915 - MTEa LTR MaLR 0 379 1 5 1388 403 291 46 26 chr3 105348843 105349001 -54250782 - MIR SINE MIR -95 173 6 5 1388 282 305 142 22 chr3 105349027 105349234 -54250549 - MIRc SINE MIR -12 256 29 5 1388 28 0 0 0 chr3 105350035 105350063 -54249720 + AT_rich Low_complexity Low_complexity 1 28 0 5 1388 326 323 8 44 chr3 105350211 105350475 -54249308 + CT-rich Low_complexity Low_complexity 1 254 0 5 1388 536 259 52 0 chr3 105350526 105350549 -54249234 - RSINE1 SINE B4 0 165 142 5 1388 315 0 0 0 chr3 105350549 105350584 -54249199 + (TG)n Simple_repeat Simple_repeat 1 35 0 5 1388 536 259 52 0 chr3 105350584 105350695 -54249088 - RSINE1 SINE B4 -24 141 25 5 1388 474 170 0 0 chr3 105350702 105350796 -54248987 + CT-rich Low_complexity Low_complexity 3 96 0 5 1388 204 277 67 91 chr3 105350949 105351203 -54248580 - L2b LINE L2 -208 3167 2920 5 1388 387 0 0 0 chr3 105351934 105351977 -54247806 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 5 1388 219 345 83 0 chr3 105352019 105352103 -54247680 + MIRm SINE MIR 174 264 -12 5 1388 327 285 145 7 chr3 105352201 105352346 -54247437 - L2a LINE L2 -36 3390 3226 5 1388 232 301 141 52 chr3 105352435 105352684 -54247099 + L2 LINE L2 1656 1926 -1493 5 1388 1181 70 0 0 chr3 105352808 105352951 -54246832 + B1_Mus1 SINE Alu 1 143 -5 5 1388 492 18 0 0 chr3 105352951 105353008 -54246775 + (GA)n Simple_repeat Simple_repeat 2 58 0 5 1388 522 0 0 0 chr3 105353009 105353067 -54246716 + (GGAA)n Simple_repeat Simple_repeat 3 60 0 5 1388 768 246 34 102 chr3 105353118 105353353 -54246430 - MTEa LTR MaLR -160 219 1 5 1388 798 350 134 17 chr3 105353357 105353900 -54245883 + L2 LINE L2 2365 2971 -448 5 1388 245 262 70 119 chr3 105354177 105354320 -54245463 - MLT2B2 LTR ERVL -197 318 183 5 1388 1921 295 85 19 chr3 105355996 105356409 -54243374 - Tigger7 DNA MER2_type -1877 614 165 5 1388 2157 147 104 8 chr3 105356409 105356793 -54242990 + MTC LTR MaLR 1 421 0 5 1388 1921 295 85 19 chr3 105356793 105356953 -54242830 - Tigger7 DNA MER2_type -2327 164 3 5 1388 389 337 32 22 chr3 105357302 105357487 -54242296 + MIRb SINE MIR 82 268 0 5 1388 1141 268 122 36 chr3 105357518 105357987 -54241796 - L3 LINE CR1 -212 4277 3769 5 1388 328 337 68 32 chr3 105358142 105358332 -54241451 - L1MC4a LINE L1 -1802 6080 5884 5 1388 230 289 79 0 chr3 105358400 105358476 -54241307 - L3 LINE CR1 -875 3614 3533 5 1388 510 259 57 14 chr3 105358658 105358799 -54240984 + B1_Mur3 SINE Alu 1 147 -2 5 1388 1021 73 7 13 chr3 105358799 105358952 -54240831 + (GGGGA)n Simple_repeat Simple_repeat 5 156 0 5 1388 737 327 44 27 chr3 105358985 105359258 -54240525 + B4A SINE B4 2 277 -15 5 1388 507 90 0 0 chr3 105359265 105359343 -54240440 + (CA)n Simple_repeat Simple_repeat 1 78 0 5 1388 455 268 66 71 chr3 105359406 105359603 -54240180 + MER20 DNA MER1_type 24 219 0 5 1388 1151 255 38 4 chr3 105360176 105360440 -54239343 + B4 SINE B4 2 274 -18 5 1388 304 320 151 17 chr3 105361092 105361264 -54238519 + MIRc SINE MIR 19 213 -55 5 1388 183 305 0 48 chr3 105361284 105361346 -54238437 - L2b LINE L2 -218 3157 3099 5 1388 432 196 24 18 chr3 105361506 105361618 -54238165 + GA-rich Low_complexity Low_complexity 2 115 0 5 1388 1159 33 0 48 chr3 105361618 105361807 -54237976 + (GAA)n Simple_repeat Simple_repeat 1 180 0 5 1388 432 196 24 18 chr3 105361807 105361860 -54237923 + polypurine Low_complexity Low_complexity 116 168 0 5 1388 261 219 31 15 chr3 105361860 105361925 -54237858 + GA-rich Low_complexity Low_complexity 5 70 0 5 1388 292 279 29 14 chr3 105362006 105362075 -54237708 + ID4_ SINE ID 10 79 -4 5 1388 714 24 0 0 chr3 105362083 105362167 -54237616 + (CA)n Simple_repeat Simple_repeat 2 85 0 5 1388 660 26 0 0 chr3 105362940 105363018 -54236765 + (TC)n Simple_repeat Simple_repeat 1 78 0 5 1388 261 309 36 24 chr3 105363440 105363523 -54236260 - MIR3 SINE MIR -15 193 110 5 1388 518 29 43 0 chr3 105364976 105365046 -54234737 + (TTCTCC)n Simple_repeat Simple_repeat 3 75 0 5 1388 329 229 47 0 chr3 105365150 105365251 -54234532 - MIRc SINE MIR -78 184 76 5 1388 1900 174 104 16 chr3 105365374 105365759 -54234024 + MTD LTR MaLR 1 419 0 5 1388 390 343 43 134 chr3 105366216 105366291 -54233492 - MLT2B4 LTR ERVL 0 763 694 5 1388 976 62 22 38 chr3 105366291 105366474 -54233309 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 5 1388 1240 264 133 48 chr3 105366474 105366822 -54232961 - MLT2B4 LTR ERVL -70 693 370 5 1388 1657 224 51 27 chr3 105366822 105367231 -54232552 - MTD LTR MaLR 0 419 1 5 1388 1240 251 160 32 chr3 105367231 105367451 -54232332 - MLT2B4 LTR ERVL -333 385 163 5 1388 296 327 50 25 chr3 105368118 105368265 -54231518 + MIR SINE MIR 66 223 -45 5 1388 970 158 188 10 chr3 105368496 105368688 -54231095 - URR1A DNA MER1_type 0 226 1 5 1388 447 283 39 8 chr3 105369070 105369198 -54230585 + B1F1 SINE Alu 10 141 -8 5 1388 303 328 50 28 chr3 105369356 105369497 -54230286 + MIRm SINE MIR 133 276 0 5 1388 247 395 38 38 chr3 105371200 105371358 -54228425 - MARNA DNA Mariner -19 567 410 5 1388 243 203 0 0 chr3 105371721 105371780 -54228003 + (ATGGTG)n Simple_repeat Simple_repeat 5 63 0 5 1388 290 331 154 55 chr3 105371907 105372160 -54227623 + MARNA DNA Mariner 275 552 -34 5 1388 288 0 0 0 chr3 105373180 105373212 -54226571 + (CA)n Simple_repeat Simple_repeat 1 32 0 5 1388 295 272 105 19 chr3 105373932 105374037 -54225746 + MER103 DNA DNA 12 125 -41 5 1388 183 80 0 0 chr3 105374249 105374274 -54225509 + (TTTA)n Simple_repeat Simple_repeat 3 27 0 5 1388 218 333 44 11 chr3 105374586 105374677 -54225106 + L2c LINE L2 2417 2510 -909 5 1388 313 283 0 88 chr3 105374853 105375035 -54224748 + C-rich Low_complexity Low_complexity 3 168 0 5 1388 253 346 23 15 chr3 105375387 105375519 -54224264 + L2c LINE L2 3255 3387 0 5 1388 235 213 0 0 chr3 105375519 105375566 -54224217 + (TGGA)n Simple_repeat Simple_repeat 2 48 0 5 1388 535 350 86 62 chr3 105376243 105376663 -54223120 - LTR33A LTR ERVL -6 514 85 6 1388 353 335 107 11 chr3 105376711 105376898 -54222885 + MIRb SINE MIR 64 268 0 6 1388 478 212 60 10 chr3 105376975 105377075 -54222708 + PB1D10 SINE Alu 1 105 -12 6 1388 549 0 0 0 chr3 105377075 105377136 -54222647 + (TAGA)n Simple_repeat Simple_repeat 2 62 0 6 1388 225 274 80 50 chr3 105377299 105377399 -54222384 + MIRb SINE MIR 133 235 -33 6 1388 210 270 104 35 chr3 105377556 105377671 -54222112 + MIR SINE MIR 18 140 -68 6 1388 386 309 54 61 chr3 105378004 105378152 -54221631 - RSINE1 SINE B4 -15 150 4 6 1388 555 296 103 14 chr3 105378284 105378507 -54221276 + MIRb SINE MIR 25 267 -1 6 1388 513 265 86 64 chr3 105378521 105378755 -54221028 - MIRb SINE MIR 0 268 30 6 1388 243 308 173 34 chr3 105379346 105379560 -54220223 - MIR SINE MIR -18 244 7 6 1388 314 378 64 16 chr3 105379575 105379763 -54220020 + MARNA DNA Mariner 89 285 -301 6 1388 21 57 0 0 chr3 105379927 105379962 -54219821 + AT_rich Low_complexity Low_complexity 1 35 0 6 1388 408 324 0 28 chr3 105380247 105380355 -54219428 + PB1D10 SINE Alu 5 109 -8 6 173 221 364 60 60 chr3 105381683 105381917 -54217866 + L2c LINE L2 2931 3164 -223 6 1389 374 214 35 12 chr3 105383115 105383200 -54216583 - MER58B DNA MER1_type -1 340 254 6 1389 300 111 0 0 chr3 105383496 105383541 -54216242 + (GGA)n Simple_repeat Simple_repeat 3 47 0 6 1389 301 342 81 81 chr3 105384489 105384699 -54215084 + MIRb SINE MIR 44 253 -15 6 1389 809 247 16 33 chr3 105384710 105384894 -54214889 - ID_B1 SINE B4 -34 190 10 6 1389 332 325 18 35 chr3 105386419 105386531 -54213252 - AluG_3 SINE Alu -91 220 10 6 1389 235 258 65 0 chr3 105386638 105386700 -54213083 + tRNA-Ala-GCY_ tRNA tRNA 3 68 -7 6 1389 192 77 0 0 chr3 105386708 105386734 -54213049 + (GGA)n Simple_repeat Simple_repeat 3 28 0 6 1389 6977 7 0 5 chr3 105387057 105387824 -54211959 + L1Md_T LINE L1 5820 6582 0 6 1389 717 215 0 0 chr3 105389628 105389758 -54210025 + B1_Mur3 SINE Alu 3 132 -17 6 1389 1197 22 0 0 chr3 105389758 105389892 -54209891 + L1Md_T LINE L1 5453 5586 -297 6 1389 8521 37 0 0 chr3 105389892 105390886 -54208897 + L1Md_T LINE L1 5587 6580 -2 6 1389 339 210 74 0 chr3 105391046 105391127 -54208656 + MER53 DNA hAT 77 163 -30 6 1389 268 321 0 23 chr3 105391301 105391387 -54208396 - L2a LINE L2 -3 3423 3340 6 1389 204 40 0 0 chr3 105391483 105391508 -54208275 + (GGA)n Simple_repeat Simple_repeat 3 27 0 6 1389 301 262 106 59 chr3 105391567 105391737 -54208046 - L2a LINE L2 -3 3423 3246 6 1389 340 217 73 73 chr3 105391850 105391974 -54207809 - MTEb LTR MaLR -230 149 26 6 1389 211 257 216 0 chr3 105392284 105392358 -54207425 - MIRb SINE MIR -84 184 95 6 1389 477 0 0 0 chr3 105392585 105392638 -54207145 + (TTTA)n Simple_repeat Simple_repeat 2 54 0 6 1389 789 253 53 0 chr3 105392644 105392834 -54206949 - ID_B1 SINE B4 -23 201 2 6 1389 313 325 7 73 chr3 105394023 105394159 -54205624 - L2c LINE L2 -4 3383 3257 6 1389 367 244 183 0 chr3 105394400 105394515 -54205268 - L2b LINE L2 -2 3373 3238 6 1389 185 257 78 39 chr3 105395593 105395670 -54204113 - L2b LINE L2 -1766 1653 1574 6 1389 651 209 28 40 chr3 105396027 105396277 -54203506 + MTEa LTR MaLR 9 374 -5 6 1389 16504 24 1 1 chr3 105397124 105399721 -54200062 - L1Md_T LINE L1 0 6582 3986 6 1389 456 235 16 32 chr3 105400472 105400595 -54199188 + MER94 DNA AcHobo 14 134 0 6 1389 2278 129 61 17 chr3 105401818 105402180 -54197603 - ORR1C1 LTR MaLR 0 378 1 6 1389 1096 290 82 31 chr3 105402234 105402551 -54197232 + Tigger7 DNA MER2_type 12 344 -2147 6 1389 234 277 92 0 chr3 105402614 105402679 -54197104 + Tigger7 DNA MER2_type 2385 2455 -36 6 1389 838 305 43 43 chr3 105402808 105403089 -54196694 - B4A SINE B4 -2 290 10 6 1389 440 208 59 102 chr3 105403148 105403266 -54196517 - RSINE1 SINE B4 -49 116 4 6 1389 369 0 0 0 chr3 105405307 105405348 -54194435 + (TG)n Simple_repeat Simple_repeat 2 42 0 6 1389 843 183 0 0 chr3 105405363 105405505 -54194278 - B3A SINE B2 -56 142 1 6 1389 327 320 62 8 chr3 105405913 105406042 -54193741 + L3 LINE CR1 2127 2262 -2227 6 1389 1698 231 53 0 chr3 105406058 105406417 -54193366 + Lx6 LINE L1 7068 7445 -15 6 1389 235 338 0 0 chr3 105406989 105407060 -54192723 + ID4 SINE ID 2 72 -11 6 1389 213 219 0 0 chr3 105407060 105407101 -54192682 + (TAAG)n Simple_repeat Simple_repeat 1 41 0 6 1389 265 204 93 0 chr3 105407251 105407305 -54192478 + MLT1A0 LTR MaLR 28 86 -322 6 1389 444 288 35 18 chr3 105407273 105407386 -54192397 + ID_B1 SINE B4 61 175 -49 6 1389 470 271 41 8 chr3 105407383 105407506 -54192277 + MLT1A0 LTR MaLR 232 358 -7 6 1389 480 276 9 0 chr3 105407579 105407684 -54192099 - PB1D10 SINE Alu -7 110 5 6 1389 407 267 59 25 chr3 105407727 105407846 -54191937 + MIRb SINE MIR 113 235 -33 6 1389 192 267 22 0 chr3 105408179 105408224 -54191559 + L3 LINE CR1 2830 2875 -1614 6 1389 955 264 152 30 chr3 105409201 105409700 -54190083 + L1MC3 LINE L1 7207 7766 -19 6 1389 196 265 121 57 chr3 105409706 105409830 -54189953 + L3 LINE CR1 3710 3841 -648 6 1389 396 269 168 120 chr3 105410333 105410667 -54189116 - ORR1E LTR MaLR -9 350 1 6 1389 203 283 0 0 chr3 105412304 105412357 -54187426 + L3 LINE CR1 4008 4060 -429 6 1389 1626 27 11 0 chr3 105413627 105413814 -54185969 + B2_Mm1a SINE B2 2 190 -3 6 1389 1294 175 5 0 chr3 105414309 105414520 -54185263 + B3 SINE B2 5 216 0 6 1389 220 378 0 0 chr3 105414754 105414828 -54184955 + MIR SINE MIR 61 134 -74 6 1389 959 223 29 19 chr3 105415834 105416040 -54183743 + B3 SINE B2 3 210 -6 6 1389 212 274 20 0 chr3 105416474 105416525 -54183258 + (ATG)n Simple_repeat Simple_repeat 2 53 0 6 1389 818 304 21 31 chr3 105416678 105416967 -54182816 - B4 SINE B4 -2 290 5 6 1389 630 227 100 57 chr3 105417165 105417394 -54182389 - Charlie1a DNA MER1_type -157 1298 1060 6 1389 575 293 77 14 chr3 105417519 105417727 -54182056 - Charlie1a DNA MER1_type -388 1067 847 6 1389 2405 87 16 0 chr3 105418621 105418943 -54180840 - ORR1A2 LTR MaLR 0 327 1 6 1389 494 262 106 15 chr3 105419288 105419420 -54180363 - ID_B1 SINE B4 0 224 81 6 1389 728 311 79 38 chr3 105419939 105420280 -54179503 + MLT1A LTR MaLR 18 372 -2 6 1389 234 0 0 0 chr3 105421345 105421371 -54178412 + (TC)n Simple_repeat Simple_repeat 2 27 0 6 1389 235 289 29 118 chr3 105421373 105421430 -54178353 + PB1D9 SINE Alu 27 115 -1 6 1389 276 146 0 0 chr3 105421430 105421471 -54178312 + ID_B1 SINE B4 180 220 -4 6 1389 372 296 76 25 chr3 105422298 105422557 -54177226 + L1MD LINE L1 5213 5487 -637 6 1389 1263 71 94 0 chr3 105422914 105423084 -54176699 + B2_Mm2 SINE B2 1 186 -9 6 1389 288 261 49 32 chr3 105423501 105423624 -54176159 + MER113 DNA MER1_type 107 231 -290 6 1389 210 150 0 0 chr3 105424070 105424110 -54175673 + (T)n Simple_repeat Simple_repeat 1 40 0 6 1389 199 250 0 0 chr3 105424299 105424343 -54175440 + MIRc SINE MIR 159 202 -66 6 1389 206 362 0 24 chr3 105424425 105424507 -54175276 + L3 LINE CR1 2826 2905 -1584 6 1389 812 242 78 8 chr3 105425091 105425349 -54174434 + L1MB3 LINE L1 5623 5898 -285 6 1389 888 297 100 51 chr3 105425454 105425883 -54173900 - MLT1C LTR MaLR -6 461 12 6 1389 336 200 0 0 chr3 105426068 105426138 -54173645 + (TTA)n Simple_repeat Simple_repeat 1 70 0 6 1389 737 22 11 0 chr3 105427101 105427192 -54172591 + (TTTC)n Simple_repeat Simple_repeat 2 93 0 6 1389 408 20 0 0 chr3 105427372 105427421 -54172362 + (TG)n Simple_repeat Simple_repeat 1 49 0 6 1389 297 0 0 0 chr3 105428411 105428444 -54171339 + (CA)n Simple_repeat Simple_repeat 1 33 0 6 1389 304 340 141 33 chr3 105428930 105429143 -54170640 - L1M5 LINE L1 -343 5781 5546 6 1389 213 65 0 0 chr3 105429186 105429217 -54170566 + (TC)n Simple_repeat Simple_repeat 2 32 0 6 1389 300 265 69 19 chr3 105429217 105429479 -54170304 + RMER17D LTR ERVK 275 549 -340 6 1389 777 266 128 49 chr3 105429879 105430234 -54169549 - MER31B LTR ERV1 -48 418 35 6 1389 885 298 33 66 chr3 105430234 105430600 -54169183 + ORR1E LTR MaLR 1 354 -5 6 1389 2717 74 112 0 chr3 105431786 105432152 -54167631 - MTB_Mm LTR MaLR 0 407 1 6 1389 204 56 56 0 chr3 105433423 105433459 -54166324 + (TTTTG)n Simple_repeat Simple_repeat 1 38 0 6 1389 1005 53 98 0 chr3 105433459 105433592 -54166191 - B1_Mus2 SINE Alu 0 147 2 6 1389 247 299 107 33 chr3 105433842 105433963 -54165820 + MIR SINE MIR 122 251 -11 6 1389 275 0 29 0 chr3 105433972 105434007 -54165776 + (ATTG)n Simple_repeat Simple_repeat 1 36 0 6 1389 323 182 79 86 chr3 105434310 105434418 -54165365 - PB1D9 SINE Alu -9 141 9 6 1389 348 24 0 0 chr3 105436606 105436647 -54163136 + (CA)n Simple_repeat Simple_repeat 2 42 0 6 1389 588 29 0 0 chr3 105437522 105437592 -54162191 + (TTCC)n Simple_repeat Simple_repeat 3 72 0 6 1389 372 328 98 44 chr3 105437951 105438337 -54161446 - L1MEg LINE L1 -5227 857 451 6 1389 189 356 141 17 chr3 105438661 105438838 -54160945 - MIRc SINE MIR -62 206 8 6 1389 232 210 16 16 chr3 105439459 105439522 -54160261 + CT-rich Low_complexity Low_complexity 4 66 0 6 1389 304 317 26 72 chr3 105439523 105439676 -54160107 - HAL1-3A_ME LINE L1 -419 2439 2294 6 1389 1265 41 0 0 chr3 105439928 105440074 -54159709 + B1_Mm SINE Alu 2 147 0 6 1389 561 321 18 12 chr3 105440596 105440766 -54159017 + MIR SINE MIR 29 199 -63 6 1389 264 91 0 0 chr3 105440782 105440826 -54158957 + (A)n Simple_repeat Simple_repeat 1 44 0 6 1389 252 279 85 19 chr3 105441589 105441695 -54158088 - PB1D10 SINE Alu -4 113 1 6 1389 890 293 82 59 chr3 105442296 105442955 -54156828 - L1MA4A LINE L1 -362 5938 5259 6 1389 7073 117 48 0 chr3 105442997 105444105 -54155678 - Lx LINE L1 -3 6651 5499 7 1389 360 0 0 0 chr3 105444146 105444186 -54155597 + (TG)n Simple_repeat Simple_repeat 2 41 0 7 1389 522 114 0 0 chr3 105444231 105444310 -54155473 + (TC)n Simple_repeat Simple_repeat 1 79 0 7 1389 180 282 103 23 chr3 105445729 105445816 -54153967 - MIR SINE MIR -82 180 87 7 1389 233 235 0 38 chr3 105445824 105445877 -54153906 + G-rich Low_complexity Low_complexity 2 52 0 7 1389 432 255 0 0 chr3 105447425 105447570 -54152213 + (CA)n Simple_repeat Simple_repeat 1 145 0 7 1389 201 74 0 0 chr3 105447780 105447807 -54151976 + (GCTG)n Simple_repeat Simple_repeat 1 27 0 7 1389 835 211 65 5 chr3 105449060 105449260 -54150523 + B3 SINE B2 5 216 0 7 1389 193 366 109 49 chr3 105449542 105449789 -54149994 - L2b LINE L2 -25 3350 3089 7 1389 182 261 9 0 chr3 105449938 105450049 -54149734 + (TG)n Simple_repeat Simple_repeat 1 112 0 7 1389 476 317 61 18 chr3 105450226 105450390 -54149393 + MER5A DNA MER1_type 15 185 -4 7 1389 674 275 0 0 chr3 105450866 105451008 -54148775 + ID_B1 SINE B4 83 224 0 7 1389 385 274 121 48 chr3 105451362 105451527 -54148256 + MIRb SINE MIR 30 206 -62 7 1389 315 0 0 0 chr3 105451634 105451669 -54148114 + (TTG)n Simple_repeat Simple_repeat 2 36 0 7 1389 274 333 95 0 chr3 105452392 105452497 -54147286 - RSINE1 SINE B4 -4 161 47 7 1389 420 278 64 57 chr3 105452963 105453104 -54146679 - MIR SINE MIR -119 143 2 7 1389 292 314 19 0 chr3 105453765 105453870 -54145913 - L3 LINE CR1 -726 3763 3657 7 1389 433 302 14 35 chr3 105454811 105454955 -54144828 - RLTR42-int LTR ERVK -4124 1398 1258 7 1389 621 275 129 40 chr3 105455062 105455470 -54144313 + L1M4 LINE L1 5388 5823 -355 7 1389 313 238 31 16 chr3 105455604 105455668 -54144115 + ID4 SINE ID 8 72 -11 7 1389 189 0 0 0 chr3 105455671 105455692 -54144091 + (CA)n Simple_repeat Simple_repeat 2 22 0 7 1389 513 0 0 0 chr3 105455692 105455748 -54144035 + (GA)n Simple_repeat Simple_repeat 2 58 0 7 1389 230 300 42 14 chr3 105455760 105455831 -54143952 + ID SINE ID 1 73 -151 7 1389 213 264 154 98 chr3 105456220 105456363 -54143420 - MIRb SINE MIR -117 151 1 7 1389 314 353 131 20 chr3 105456675 105456828 -54142955 - L3 LINE CR1 -1166 3323 3154 7 1389 207 0 0 0 chr3 105457917 105457940 -54141843 + (TTCA)n Simple_repeat Simple_repeat 1 23 0 7 1389 206 271 37 75 chr3 105458694 105458893 -54140890 + L2a LINE L2 2925 3171 -255 7 1389 2162 194 40 10 chr3 105459056 105459452 -54140331 - MTD LTR MaLR -11 408 1 7 1389 2986 273 85 37 chr3 105459492 105460631 -54139152 - Lx8 LINE L1 -90 7383 6197 7 1389 1359 87 0 11 chr3 105460631 105460816 -54138967 + B2_Mm2 SINE B2 2 184 -11 7 1389 1001 307 232 75 chr3 105460816 105461246 -54138537 - Lx8 LINE L1 -1305 6339 5849 7 1389 191 303 174 43 chr3 105461274 105461412 -54138371 + L2a LINE L2 3271 3426 0 7 1389 423 276 160 84 chr3 105462436 105462780 -54137003 - MTEb LTR MaLR 0 379 10 7 1389 191 167 0 45 chr3 105462979 105463023 -54136760 - MIRm SINE MIR -4 272 231 7 1389 1168 50 0 0 chr3 105463158 105463299 -54136484 + B1_Mus1 SINE Alu 2 142 -6 7 1389 239 0 0 31 chr3 105463302 105463334 -54136449 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 7 1389 201 102 39 39 chr3 105463828 105463879 -54135904 + T-rich Low_complexity Low_complexity 4 54 0 7 1389 336 250 0 48 chr3 105464627 105464711 -54135072 - ID2 SINE ID -3 80 1 7 1389 186 43 0 0 chr3 105464897 105464920 -54134863 + (TGG)n Simple_repeat Simple_repeat 1 23 0 7 1389 390 21 0 0 chr3 105464920 105464967 -54134816 + (TG)n Simple_repeat Simple_repeat 1 47 0 7 1389 453 278 97 0 chr3 105465035 105465211 -54134572 - L1MD2 LINE L1 -325 6034 5842 7 1389 518 279 48 35 chr3 105465228 105465373 -54134410 + B1F SINE Alu 3 149 0 7 1389 280 297 40 0 chr3 105465483 105465584 -54134199 - L1MD2 LINE L1 -629 5730 5626 7 1389 513 47 0 0 chr3 105466597 105466661 -54133122 + (TGAA)n Simple_repeat Simple_repeat 2 65 0 7 1389 229 352 75 19 chr3 105468292 105468399 -54131384 - MER76 LTR ERVL -98 593 481 7 1389 302 326 145 7 chr3 105474961 105475106 -54124677 - MIR3 SINE MIR -15 193 29 7 1389 180 0 0 0 chr3 105475126 105475146 -54124637 + (GTTTG)n Simple_repeat Simple_repeat 2 21 0 7 1389 243 320 65 40 chr3 105475453 105475621 -54124162 - MIR SINE MIR -81 181 25 7 1389 248 272 22 137 chr3 105476144 105476327 -54123456 + LTR48B LTR ERV1 138 299 -345 7 1389 262 200 73 0 chr3 105477598 105477653 -54122130 + B3A SINE B2 2 60 -138 7 1389 520 191 161 7 chr3 105477796 105477933 -54121850 + RSINE1 SINE B4 2 159 -6 7 1389 718 184 8 16 chr3 105477952 105478079 -54121704 - B1_Mus2 SINE Alu -21 126 1 7 1389 560 200 228 12 chr3 105478441 105478603 -54121180 + B3A SINE B2 2 198 0 7 1389 312 91 0 0 chr3 105479876 105479920 -54119863 + (TA)n Simple_repeat Simple_repeat 2 45 0 7 1389 290 353 0 32 chr3 105480393 105480516 -54119267 + Charlie4z DNA MER1_type 8 126 -41 7 1389 1185 41 0 40 chr3 105480769 105480921 -54118862 + B1_Mm SINE Alu 2 147 0 7 1389 195 42 0 0 chr3 105480921 105480945 -54118838 + (A)n Simple_repeat Simple_repeat 1 24 0 7 1389 704 215 35 35 chr3 105480974 105481143 -54118640 + B2_Mm2 SINE B2 5 173 -22 7 1389 776 145 76 8 chr3 105482659 105482791 -54116992 + B1_Mur1 SINE Alu 1 141 -8 7 1389 199 299 80 80 chr3 105482865 105483003 -54116780 + MIR SINE MIR 74 211 -51 7 1389 292 257 9 90 chr3 105483056 105483167 -54116616 + MT2B LTR ERVL 156 257 -344 7 1389 753 170 66 7 chr3 105483072 105483208 -54116575 + B1_Mur3 SINE Alu 5 148 -1 7 1389 436 232 41 89 chr3 105484027 105484150 -54115633 + PB1D10 SINE Alu 1 117 0 7 1389 378 284 108 49 chr3 105484468 105484677 -54115106 - B3A SINE B2 0 216 6 7 1389 1389 61 61 0 chr3 105484748 105484929 -54114854 + B2_Mm1a SINE B2 2 193 0 7 1389 222 333 159 19 chr3 105485204 105485226 -54114557 - ID_B1 SINE B4 -25 199 148 7 1389 233 226 0 86 chr3 105485226 105485284 -54114499 - PB1D10 SINE Alu -28 89 37 7 1389 222 333 159 19 chr3 105485284 105485311 -54114472 - ID_B1 SINE B4 -25 147 78 7 1389 195 42 0 0 chr3 105485509 105485533 -54114250 + (A)n Simple_repeat Simple_repeat 1 24 0 7 1389 1178 61 0 26 chr3 105486711 105486862 -54112921 + B1_Mus2 SINE Alu 1 147 0 7 1389 514 174 138 16 chr3 105487511 105487634 -54112149 + B1_Mur3 SINE Alu 3 140 -9 7 1389 310 192 197 16 chr3 105487669 105487796 -54111987 - L1MCa LINE L1 -4529 1979 1830 7 1389 1676 16 5 0 chr3 105487829 105488020 -54111763 - B2_Mm1a SINE B2 0 193 2 7 1389 245 320 160 24 chr3 105488062 105488187 -54111596 + B1F2 SINE Alu 4 145 -4 7 1389 201 306 127 18 chr3 105488189 105488299 -54111484 - L2a LINE L2 -265 3161 3040 7 1389 538 106 250 0 chr3 105488346 105488450 -54111333 - B1_Mus1 SINE Alu -2 146 17 7 1389 229 232 0 67 chr3 105488404 105488464 -54111319 + YREP_Mm Unknown Unknown 256 311 -1501 7 1389 258 32 0 0 chr3 105488641 105488672 -54111111 + (TC)n Simple_repeat Simple_repeat 2 32 0 7 1389 186 338 38 0 chr3 105489037 105489117 -54110666 + L2a LINE L2 3342 3424 -2 7 1389 22 35 0 0 chr3 105489660 105489689 -54110094 + AT_rich Low_complexity Low_complexity 1 29 0 7 1389 431 312 0 0 chr3 105491138 105491247 -54108536 - PB1D10 SINE Alu -6 111 3 7 1389 241 368 25 41 chr3 105491277 105491399 -54108384 + L2a LINE L2 3280 3399 -27 7 1389 589 153 171 0 chr3 105491463 105491574 -54108209 + ORR1A4 LTR MaLR 200 329 0 7 1389 1035 240 102 96 chr3 105492023 105492397 -54107386 - MTE2b LTR MaLR -2 377 2 7 1389 268 241 52 0 chr3 105492820 105492878 -54106905 - MIR SINE MIR -87 175 115 7 1389 2011 267 115 61 chr3 105492880 105493186 -54106597 + Lx9 LINE L1 6683 6999 -645 7 1389 1040 115 14 0 chr3 105493186 105493334 -54106449 + B1_Mur4 SINE Alu 1 150 0 7 1389 2011 267 115 61 chr3 105493334 105493926 -54105857 + Lx9 LINE L1 7000 7629 -15 7 1389 198 0 0 0 chr3 105494661 105494683 -54105100 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 7 1389 186 358 105 0 chr3 105495460 105495555 -54104228 - L2c LINE L2 -177 3210 3106 7 1389 312 292 11 33 chr3 105495659 105495751 -54104032 - MLT1J LTR MaLR -196 316 227 7 1389 458 216 282 18 chr3 105495790 105495960 -54103823 - B3 SINE B2 0 216 2 7 1389 339 296 53 53 chr3 105495967 105496081 -54103702 - MLT1J LTR MaLR -293 219 106 7 1389 630 256 0 16 chr3 105496063 105496186 -54103597 - RSINE1 SINE B4 -39 126 6 7 1389 238 266 122 83 chr3 105497022 105497178 -54102605 + RMER19B LTR ERVK 396 557 -345 7 1389 215 200 0 0 chr3 105498171 105498211 -54101572 + G-rich Low_complexity Low_complexity 1 40 0 7 1389 354 98 0 0 chr3 105498359 105498410 -54101373 + (CA)n Simple_repeat Simple_repeat 1 51 0 7 1389 1448 243 82 10 chr3 105500284 105500675 -54099108 - MTD LTR MaLR 0 419 1 1 1389 1188 148 113 0 chr3 105500937 105501140 -54098643 - URR1A DNA MER1_type 0 226 1 2 1389 211 324 39 0 chr3 105501215 105501317 -54098466 + MIR SINE MIR 48 153 -55 3 1389 233 301 0 14 chr3 105501359 105501433 -54098350 - MIRc SINE MIR -126 142 70 4 1389 374 212 39 20 chr3 105502803 105502905 -54096878 + PB1D10 SINE Alu 9 111 -6 5 1389 475 297 0 8 chr3 105503346 105503475 -54096308 + MTEa LTR MaLR 206 333 -46 6 1389 535 158 128 45 chr3 105503536 105503613 -54096170 + B1_Mur4 SINE Alu 6 84 -66 7 1389 360 0 0 0 chr3 105503613 105503653 -54096130 + (GA)n Simple_repeat Simple_repeat 1 40 0 8 1389 535 158 128 45 chr3 105503653 105503708 -54096075 + B1_Mur4 SINE Alu 85 147 -3 7 1389 645 49 0 0 chr3 105503710 105503791 -54095992 + (GAAA)n Simple_repeat Simple_repeat 3 83 0 9 1389 342 218 247 37 chr3 105503804 105503917 -54095866 + B3A SINE B2 2 150 -48 1 1389 294 95 0 0 chr3 105503917 105503959 -54095824 + (CAGG)n Simple_repeat Simple_repeat 1 42 0 1 1389 342 218 247 37 chr3 105503959 105503996 -54095787 + B3A SINE B2 151 186 -12 1 1389 333 0 0 0 chr3 105503996 105504033 -54095750 + (GA)n Simple_repeat Simple_repeat 2 38 0 1 1389 312 70 0 0 chr3 105504194 105504237 -54095546 + (TC)n Simple_repeat Simple_repeat 2 44 0 1 1389 203 245 19 0 chr3 105505317 105505370 -54094413 + GA-rich Low_complexity Low_complexity 1 54 0 1 1389 677 227 30 89 chr3 105505688 105505891 -54093892 + B3A SINE B2 2 192 -6 1 1389 23 0 0 0 chr3 105507808 105507831 -54091952 + GC_rich Low_complexity Low_complexity 1 23 0 1 1389 303 28 0 0 chr3 105507851 105507887 -54091896 + (GGAGA)n Simple_repeat Simple_repeat 1 36 0 1 1389 236 190 0 33 chr3 105508582 105508642 -54091141 + C-rich Low_complexity Low_complexity 4 61 0 1 1389 372 22 0 0 chr3 105510422 105510467 -54089316 + (CAAAA)n Simple_repeat Simple_repeat 2 46 0 1 1389 240 324 27 13 chr3 105511511 105511586 -54088197 - PB1D10 SINE Alu -40 77 2 2 1389 242 216 59 0 chr3 105511801 105511852 -54087931 + ID4_ SINE ID 17 70 -13 2 1389 189 0 0 0 chr3 105511943 105511964 -54087819 + (TCTG)n Simple_repeat Simple_repeat 2 22 0 2 1389 486 0 0 0 chr3 105511997 105512051 -54087732 + (TG)n Simple_repeat Simple_repeat 1 54 0 2 1389 355 360 7 0 chr3 105512130 105512266 -54087517 - MIR SINE MIR -113 149 13 2 1389 1213 48 7 0 chr3 105512695 105512841 -54086942 + B1_Mus2 SINE Alu 1 147 0 2 1389 182 77 77 0 chr3 105512841 105512880 -54086903 + A-rich Low_complexity Low_complexity 4 45 0 2 1390 198 0 0 0 chr3 105514148 105514170 -54085613 + (CAGC)n Simple_repeat Simple_repeat 2 23 0 2 1390 226 231 61 15 chr3 105515262 105515328 -54084455 - MIR SINE MIR -70 192 124 2 1390 606 275 82 0 chr3 105515330 105515501 -54084282 + ID_B1 SINE B4 2 186 -38 2 1390 394 268 42 59 chr3 105515511 105515630 -54084153 + PB1D10 SINE Alu 1 117 0 3 1390 558 0 0 0 chr3 105516036 105516098 -54083685 + (TC)n Simple_repeat Simple_repeat 2 63 0 3 1390 561 30 0 0 chr3 105517758 105517825 -54081958 + (TCCCC)n Simple_repeat Simple_repeat 4 70 0 3 1390 282 331 168 6 chr3 105517905 105518084 -54081699 + MIRb SINE MIR 47 254 -14 3 1390 677 240 15 11 chr3 105518166 105518353 -54081430 - B3 SINE B2 -4 194 9 3 1390 240 297 0 73 chr3 105518414 105518523 -54081260 + MIRb SINE MIR 105 205 -63 3 1390 342 0 0 0 chr3 105518571 105518609 -54081174 + (CA)n Simple_repeat Simple_repeat 2 39 0 3 1390 455 273 6 120 chr3 105518703 105518861 -54080922 - B1F SINE Alu -1 148 9 3 1390 349 276 33 33 chr3 105518862 105519012 -54080771 + Tigger5 DNA MER2_type 2225 2374 -32 3 1390 396 40 0 0 chr3 105520327 105520377 -54079406 + (TG)n Simple_repeat Simple_repeat 1 50 0 3 1390 180 0 0 0 chr3 105520378 105520398 -54079385 + (TGG)n Simple_repeat Simple_repeat 1 20 0 4 1390 432 0 0 0 chr3 105520711 105520759 -54079024 + (TG)n Simple_repeat Simple_repeat 2 49 0 4 1390 409 187 0 0 chr3 105522074 105522149 -54077634 + B2_Mm2 SINE B2 4 78 -117 4 1390 543 31 0 0 chr3 105522384 105522449 -54077334 + (TTCC)n Simple_repeat Simple_repeat 4 68 0 4 1390 237 197 205 26 chr3 105522483 105522576 -54077207 - MIRm SINE MIR -141 127 21 4 1390 204 40 0 0 chr3 105525749 105525774 -54074009 + (TG)n Simple_repeat Simple_repeat 1 25 0 4 1390 665 213 95 32 chr3 105526720 105526909 -54072874 - B3 SINE B2 -14 202 2 4 1390 970 265 32 46 chr3 105527327 105527612 -54072171 - B4A SINE B4 -8 284 4 4 1390 722 167 279 23 chr3 105527740 105527912 -54071871 + B3 SINE B2 1 216 0 4 1390 273 29 0 0 chr3 105529649 105529683 -54070100 + (TTTTTG)n Simple_repeat Simple_repeat 3 36 0 4 1390 531 280 8 0 chr3 105529935 105530053 -54069730 + PB1 SINE Alu 8 126 -1 5 1390 477 243 27 0 chr3 105532680 105532791 -54066992 - PB1 SINE Alu -7 120 7 5 1390 372 218 186 0 chr3 105533863 105533987 -54065796 + L1M5 LINE L1 5422 5568 -594 5 1390 342 308 30 15 chr3 105534098 105534230 -54065553 - ID_B1 SINE B4 -9 215 82 5 1390 873 139 222 39 chr3 105534318 105534498 -54065285 + B3 SINE B2 1 213 -3 5 1390 554 83 0 23 chr3 105534520 105534606 -54065177 + (TATATG)n Simple_repeat Simple_repeat 1 84 0 5 1390 1239 122 50 0 chr3 105535467 105535648 -54064135 + B2_Mm2 SINE B2 2 191 -4 5 1390 374 245 30 20 chr3 105535856 105535956 -54063827 - ID_B1 SINE B4 -9 215 115 5 1390 681 181 22 22 chr3 105536192 105536328 -54063455 - B1_Mur1 SINE Alu 0 149 14 5 1390 270 282 26 0 chr3 105536737 105536815 -54062968 - ID2 SINE ID 0 83 4 5 1390 1242 35 7 0 chr3 105536885 105537030 -54062753 - B1_Mm SINE Alu 0 147 2 6 1390 402 275 101 7 chr3 105537068 105537207 -54062576 - B3A SINE B2 -45 153 2 6 1390 256 278 27 14 chr3 105537403 105537476 -54062307 - ID4_ SINE ID -1 82 9 6 1390 384 255 31 21 chr3 105538955 105539051 -54060732 - PB1D10 SINE Alu -18 99 3 6 1390 184 358 66 19 chr3 105539243 105539371 -54060412 + L2a LINE L2 3241 3403 -23 6 1390 1494 123 33 33 chr3 105539707 105539977 -54059806 + Lx LINE L1 6383 6652 -2 6 1390 599 217 191 0 chr3 105541008 105541160 -54058623 - B3 SINE B2 -34 182 2 6 1390 884 216 0 0 chr3 105541182 105541335 -54058448 + B3A SINE B2 1 153 -45 6 1390 297 0 0 0 chr3 105541790 105541823 -54057960 + (CA)n Simple_repeat Simple_repeat 2 34 0 6 1390 366 307 24 27 chr3 105541965 105542099 -54057684 + PB1D10 SINE Alu 11 143 -5 6 1390 26 0 0 0 chr3 105542573 105542599 -54057184 + AT_rich Low_complexity Low_complexity 1 26 0 7 1390 306 0 0 0 chr3 105544639 105544673 -54055110 + (TC)n Simple_repeat Simple_repeat 1 34 0 7 1390 270 0 0 0 chr3 105544673 105544702 -54055081 + (CA)n Simple_repeat Simple_repeat 1 30 0 7 1390 237 195 86 49 chr3 105544742 105544823 -54054960 + PB1D10 SINE Alu 29 112 -5 7 1390 1305 196 72 39 chr3 105545552 105546107 -54053676 + RMER4A LTR ERVK 1 585 0 7 1390 238 267 34 103 chr3 105546349 105546466 -54053317 - MT2B2 LTR ERVL -312 272 164 7 1390 396 278 124 36 chr3 105546481 105546675 -54053108 - L1MC1 LINE L1 -23 6310 6100 7 1390 6105 75 20 6 chr3 105546675 105547531 -54052252 + MusHAL1 LINE L1 1218 2085 -627 7 1390 1265 53 87 17 chr3 105547872 105548045 -54051738 + B2_Mm2 SINE B2 2 186 -9 7 1390 952 75 0 141 chr3 105549354 105549524 -54050259 - B1_Mm SINE Alu 0 147 2 7 1390 383 125 42 0 chr3 105549579 105549662 -54050121 - B2_Mm2 SINE B2 -112 86 1 8 1390 230 250 0 32 chr3 105549773 105549835 -54049948 + Tigger7 DNA MER2_type 2399 2458 -33 8 1390 215 289 0 0 chr3 105550108 105550160 -54049623 - ID4 SINE ID -10 73 22 8 1390 245 346 0 86 chr3 105550314 105550431 -54049352 - B3A SINE B2 -87 111 5 8 1390 240 35 0 0 chr3 105550804 105550833 -54048950 + (T)n Simple_repeat Simple_repeat 1 29 0 8 1390 1245 21 7 0 chr3 105550835 105550979 -54048804 - B1_Mm SINE Alu -2 145 1 8 1390 411 296 52 26 chr3 105551616 105551807 -54047976 - B3A SINE B2 -1 197 2 8 1390 434 228 21 21 chr3 105552010 105552104 -54047679 + PB1D10 SINE Alu 7 100 -17 8 1390 265 363 61 5 chr3 105553826 105554039 -54045744 + L1MEc LINE L1 48 272 -6128 8 1390 3152 62 0 0 chr3 105554261 105554661 -54045122 + L1Md_F2 LINE L1 6183 6582 0 8 1390 184 59 0 56 chr3 105554934 105554970 -54044813 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 9 1390 541 233 74 15 chr3 105554984 105555119 -54044664 + B1_Mur1 SINE Alu 6 148 -1 9 1390 965 209 64 10 chr3 105555210 105555413 -54044370 - B3 SINE B2 -1 215 2 9 1390 456 250 127 109 chr3 105556524 105556744 -54043039 - MER2 DNA MER2_type -121 224 1 9 1390 198 0 0 0 chr3 105556783 105556805 -54042978 + (CAAAAA)n Simple_repeat Simple_repeat 2 23 0 9 1390 251 269 0 63 chr3 105556920 105557028 -54042755 - MIRb SINE MIR -26 242 139 9 1390 211 200 0 0 chr3 105557028 105557047 -54042736 + A-rich Low_complexity Low_complexity 1 19 0 9 1390 1227 48 0 0 chr3 105557047 105557194 -54042589 + B1_Mus2 SINE Alu 1 147 0 9 1390 211 200 0 0 chr3 105557194 105557219 -54042564 + A-rich Low_complexity Low_complexity 20 44 0 9 1390 604 220 25 0 chr3 105557219 105557337 -54042446 - B3 SINE B2 0 216 96 9 1390 22 70 0 0 chr3 105557568 105557611 -54042172 + AT_rich Low_complexity Low_complexity 1 43 0 1 1390 1176 55 0 7 chr3 105557968 105558115 -54041668 - B1_Mus2 SINE Alu -1 146 1 1 1390 631 251 68 149 chr3 105558201 105558510 -54041273 + B4A SINE B4 4 287 -5 1 1390 243 0 0 0 chr3 105558548 105558575 -54041208 + (CA)n Simple_repeat Simple_repeat 2 28 0 1 1390 234 298 144 17 chr3 105559298 105559472 -54040311 - L3 LINE CR1 -163 4326 4131 1 1390 215 390 13 13 chr3 105559587 105559665 -54040118 + ID4_ SINE ID 4 81 -2 1 1390 2025 77 26 20 chr3 105559917 105560220 -54039563 + L1_Mus3 LINE L1 6328 6632 -6 1 1390 302 239 32 10 chr3 105560263 105560364 -54039419 - MTD LTR MaLR -311 108 8 1 1390 432 0 0 0 chr3 105560376 105560424 -54039359 + (CA)n Simple_repeat Simple_repeat 2 49 0 1 1390 341 329 112 58 chr3 105560571 105560829 -54038954 + B4 SINE B4 2 273 -19 1 1390 258 315 58 80 chr3 105561147 105561285 -54038498 - B1F1 SINE Alu -11 138 4 1 1390 926 40 161 0 chr3 105561904 105562028 -54037755 - B1_Mm SINE Alu 0 147 4 1 1390 939 280 86 0 chr3 105562076 105562344 -54037439 - B4A SINE B4 0 292 2 1 1390 21 0 0 0 chr3 105562388 105562409 -54037374 + AT_rich Low_complexity Low_complexity 1 21 0 1 1390 228 312 0 0 chr3 105562671 105562719 -54037064 - B1F SINE Alu -97 52 5 1 1390 253 371 0 0 chr3 105563073 105563143 -54036640 + ID4_ SINE ID 1 70 -13 1 1390 184 333 53 13 chr3 105563197 105563273 -54036510 - MIR SINE MIR -156 106 28 1 1390 917 246 0 11 chr3 105563549 105563738 -54036045 - B3A SINE B2 -11 187 1 1 1390 22 0 0 0 chr3 105563939 105563961 -54035822 + AT_rich Low_complexity Low_complexity 1 22 0 1 1390 197 306 20 0 chr3 105564012 105564061 -54035722 + L2a LINE L2 3361 3410 -16 1 1390 1417 216 75 36 chr3 105565466 105565803 -54033980 + ORR1D1 LTR MaLR 1 352 -22 1 1390 243 0 0 0 chr3 105565803 105565830 -54033953 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 1390 1417 216 75 36 chr3 105565830 105565852 -54033931 + ORR1D1 LTR MaLR 353 374 0 1 1390 249 347 39 113 chr3 105565852 105566161 -54033622 + L2 LINE L2 2762 3047 -372 1 1390 360 281 282 12 chr3 105566453 105566705 -54033078 - L2 LINE L2 -488 2931 2612 1 1390 655 262 172 8 chr3 105566744 105567121 -54032662 + L1MCa LINE L1 1325 1763 -4745 1 1390 353 286 175 8 chr3 105567263 105567470 -54032313 + L1MCa LINE L1 2732 2968 -3353 1 1390 25 0 0 0 chr3 105568134 105568159 -54031624 + AT_rich Low_complexity Low_complexity 1 25 0 1 1390 254 248 156 15 chr3 105568169 105568304 -54031479 + L1M4 LINE L1 2779 2932 -3214 1 1390 481 233 136 17 chr3 105568321 105568439 -54031344 - B1_Mur1 SINE Alu -12 137 6 1 1390 414 292 114 6 chr3 105568472 105568830 -54030953 + L1M4 LINE L1 4787 5183 -963 1 1390 2722 203 32 50 chr3 105568903 105569578 -54030205 - Lx9 LINE L1 -1597 6047 5334 1 1390 1285 98 43 0 chr3 105569578 105569762 -54030021 - B2_Mm2 SINE B2 -3 192 1 1 1390 2722 191 18 54 chr3 105569762 105569912 -54029871 - Lx9 LINE L1 -514 5333 5192 1 1390 924 245 94 27 chr3 105569913 105570211 -54029572 + Lx9 LINE L1 6543 6860 -784 1 1390 524 175 52 0 chr3 105570212 105570310 -54029473 + B3 SINE B2 24 131 -67 1 1390 639 187 2 17 chr3 105570296 105570442 -54029341 + ORR1C2 LTR MaLR 189 384 0 1 1390 449 173 53 38 chr3 105570447 105570579 -54029204 + Lx9 LINE L1 7381 7514 -130 1 1390 568 281 10 64 chr3 105570973 105571175 -54028608 + B4 SINE B4 4 194 -98 1 1390 280 286 137 30 chr3 105571445 105571715 -54028068 + L1MC1 LINE L1 6026 6324 -9 1 1390 23 101 0 0 chr3 105571903 105571982 -54027801 + AT_rich Low_complexity Low_complexity 1 79 0 1 1390 441 295 122 7 chr3 105572514 105572801 -54026982 - L1MA5 LINE L1 -114 6186 5867 1 1390 1505 73 0 5 chr3 105572810 105573003 -54026780 + B2_Mm2 SINE B2 2 193 -2 1 1390 264 324 28 0 chr3 105573026 105573097 -54026686 + B4 SINE B4 13 85 -207 1 1390 200 122 0 24 chr3 105573130 105573172 -54026611 + (TG)n Simple_repeat Simple_repeat 1 41 0 1 1390 211 302 216 0 chr3 105573183 105573299 -54026484 + B1_Mus2 SINE Alu 7 147 0 1 1390 434 235 16 25 chr3 105573241 105573363 -54026420 + B4 SINE B4 168 288 -4 1 1390 240 305 90 50 chr3 105573469 105573569 -54026214 + PB1D7 SINE Alu 9 112 -8 1 1390 555 78 0 0 chr3 105573581 105573658 -54026125 + (GGGA)n Simple_repeat Simple_repeat 2 78 0 1 1390 261 0 0 0 chr3 105573928 105573957 -54025826 + (A)n Simple_repeat Simple_repeat 1 29 0 1 1390 925 226 35 10 chr3 105574571 105574768 -54025015 - B3 SINE B2 -10 206 5 1 1390 347 247 13 52 chr3 105574988 105575065 -54024718 + RSINE1 SINE B4 3 76 -89 1 1390 24 53 0 0 chr3 105575250 105575288 -54024495 + AT_rich Low_complexity Low_complexity 1 38 0 1 1390 269 197 49 0 chr3 105575610 105575671 -54024112 - Lx8 LINE L1 -1566 5907 5844 1 1390 741 233 62 31 chr3 105576873 105577068 -54022715 + MLT2C1 LTR ERVL 19 219 -178 1 1390 279 300 22 22 chr3 105577120 105577212 -54022571 + MER58B DNA MER1_type 250 341 0 1 1390 296 272 49 0 chr3 105577346 105577427 -54022356 + PB1D10 SINE Alu 32 116 -1 1 1390 371 321 93 13 chr3 105577434 105577671 -54022112 - MIR SINE MIR -5 257 2 1 1390 360 0 0 0 chr3 105577870 105577910 -54021873 + (TG)n Simple_repeat Simple_repeat 2 41 0 1 1390 3027 55 31 3 chr3 105578513 105578898 -54020885 - MTA_Mm LTR MaLR 0 396 1 1 1390 204 149 20 41 chr3 105579077 105579126 -54020657 + T-rich Low_complexity Low_complexity 3 50 0 1 1390 244 253 177 52 chr3 105579130 105579226 -54020557 - PB1D9 SINE Alu 0 120 13 1 1390 405 330 0 0 chr3 105579304 105579413 -54020370 + PB1D10 SINE Alu 1 109 -8 1 1390 986 183 81 5 chr3 105579510 105579708 -54020075 + B3 SINE B2 1 213 -3 1 1390 1164 62 0 0 chr3 105580721 105580867 -54018916 + B1_Mus1 SINE Alu 1 146 -2 1 1390 210 128 0 0 chr3 105580875 105580914 -54018869 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 1 1390 648 249 52 6 chr3 105581024 105581198 -54018585 - B3A SINE B2 -16 182 1 1 1390 22 80 0 0 chr3 105581493 105581543 -54018240 + AT_rich Low_complexity Low_complexity 1 50 0 1 1390 255 31 0 0 chr3 105581674 105581706 -54018077 + (CA)n Simple_repeat Simple_repeat 2 33 0 1 1390 437 222 37 9 chr3 105581715 105581824 -54017959 - Lx7 LINE L1 -388 7308 7197 1 1390 231 114 0 0 chr3 105581874 105581909 -54017874 + (TCTG)n Simple_repeat Simple_repeat 3 37 0 1 1390 258 256 0 11 chr3 105581925 105581969 -54017814 + A-rich Low_complexity Low_complexity 1 44 0 1 1390 1244 47 0 0 chr3 105581969 105582117 -54017666 + B1_Mus1 SINE Alu 1 148 0 1 1390 258 256 0 11 chr3 105582117 105582163 -54017620 + A-rich Low_complexity Low_complexity 45 89 0 1 1390 2022 182 93 5 chr3 105582178 105582587 -54017196 - Lx6 LINE L1 -211 7249 6805 1 1390 396 0 0 0 chr3 105582623 105582667 -54017116 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 1390 411 284 0 9 chr3 105582729 105582839 -54016944 + PB1D9 SINE Alu 5 113 -7 1 1390 441 95 0 0 chr3 105582846 105582909 -54016874 + (GGAA)n Simple_repeat Simple_repeat 3 65 0 1 1390 213 65 0 0 chr3 105583594 105583625 -54016158 + (TCTG)n Simple_repeat Simple_repeat 2 32 0 1 1390 288 77 0 0 chr3 105583627 105583666 -54016117 + (CA)n Simple_repeat Simple_repeat 1 39 0 1 1390 22 56 0 0 chr3 105584153 105584189 -54015594 + AT_rich Low_complexity Low_complexity 1 36 0 1 1390 294 295 10 50 chr3 105584652 105584752 -54015031 - BC1_Mm scRNA scRNA -53 99 4 1 1390 270 371 20 10 chr3 105584933 105585031 -54014752 + B1F SINE Alu 5 103 -46 1 1390 450 288 135 39 chr3 105585373 105585633 -54014150 + B4A SINE B4 5 289 -3 1 1390 235 318 60 53 chr3 105585714 105585847 -54013936 - MIR SINE MIR -45 217 84 1 1390 225 311 64 28 chr3 105586329 105586438 -54013345 + PB1D10 SINE Alu 1 113 -4 1 1390 279 0 0 0 chr3 105587687 105587718 -54012065 + (TTTTG)n Simple_repeat Simple_repeat 5 35 0 1 1390 425 221 101 58 chr3 105587718 105587847 -54011936 - B1_Mur3 SINE Alu -12 137 1 1 1390 1371 73 0 27 chr3 105587911 105588094 -54011689 + B2_Mm2 SINE B2 4 181 -14 1 1390 28 0 0 0 chr3 105588214 105588242 -54011541 + AT_rich Low_complexity Low_complexity 1 28 0 1 1390 359 221 161 19 chr3 105588633 105588794 -54010989 + Lx6 LINE L1 7276 7459 -1 1 1390 822 186 157 0 chr3 105588926 105589098 -54010685 - B3 SINE B2 -14 202 4 1 1390 833 223 84 11 chr3 105589415 105589745 -54010038 + MTD LTR MaLR 1 405 -14 1 1390 919 235 112 27 chr3 105589754 105590012 -54009771 + MTD-int LTR MaLR 1 280 -978 1 1390 2320 132 23 6 chr3 105590012 105590535 -54009248 - Lx4B LINE L1 -1079 5979 5446 1 1390 1158 101 35 6 chr3 105590535 105590705 -54009078 - B2_Mm2 SINE B2 -1 194 20 1 1390 1145 144 14 5 chr3 105590705 105590914 -54008869 - Lx4B LINE L1 -450 5436 5226 1 1390 2700 197 82 6 chr3 105590907 105591590 -54008193 + Lx3C LINE L1 6240 6974 -2 1 1390 795 143 79 0 chr3 105591639 105591765 -54008018 + B1_Mur4 SINE Alu 6 141 -9 1 1390 296 227 11 0 chr3 105591765 105591853 -54007930 + (TA)n Simple_repeat Simple_repeat 2 90 0 1 1390 2122 236 92 78 chr3 105591866 105592692 -54007091 + MTD-int LTR MaLR 240 1138 -120 1 1390 1422 209 120 46 chr3 105592669 105593036 -54006747 + MTD LTR MaLR 6 399 -20 1 1390 399 21 0 0 chr3 105593524 105593572 -54006211 + (CA)n Simple_repeat Simple_repeat 2 49 0 1 1390 556 235 41 75 chr3 105593587 105593734 -54006049 - B1_Mus2 SINE Alu 0 147 6 1 1390 22 0 0 0 chr3 105593822 105593844 -54005939 + AT_rich Low_complexity Low_complexity 1 22 0 1 1390 418 294 169 56 chr3 105593850 105594099 -54005684 + B4 SINE B4 6 282 -10 1 1390 427 181 29 78 chr3 105594444 105594546 -54005237 + PB1 SINE Alu 31 127 0 1 1390 1329 66 22 0 chr3 105594758 105594940 -54004843 + B2_Mm1t SINE B2 3 188 -5 1 1390 1126 89 0 0 chr3 105594991 105595137 -54004646 - B1_Mus2 SINE Alu 0 147 2 1 1390 425 212 347 27 chr3 105595538 105595688 -54004095 + B3 SINE B2 2 199 -17 2 1390 360 0 0 0 chr3 105595689 105595729 -54004054 + (TAAAA)n Simple_repeat Simple_repeat 5 44 0 2 1390 530 208 0 40 chr3 105595912 105596012 -54003771 - B1_Mur2 SINE Alu -51 98 3 2 1390 536 226 213 0 chr3 105596018 105596182 -54003601 - B3 SINE B2 -13 203 5 2 1390 434 356 84 24 chr3 105596389 105596602 -54003181 - MIRb SINE MIR -8 260 35 2 1390 225 0 0 0 chr3 105596636 105596661 -54003122 + (TCTG)n Simple_repeat Simple_repeat 2 26 0 2 1390 546 245 0 0 chr3 105598250 105598344 -54001439 + RSINE1 SINE B4 58 151 -14 2 1390 819 246 31 5 chr3 105598387 105598583 -54001200 + B3 SINE B2 1 201 -15 2 1390 21 36 0 0 chr3 105598888 105598916 -54000867 + AT_rich Low_complexity Low_complexity 1 28 0 2 1390 816 244 67 0 chr3 105599168 105599348 -54000435 + B3 SINE B2 15 206 -10 2 1390 300 244 38 13 chr3 105601445 105601524 -53998259 + ID2 SINE ID 2 82 -1 2 1390 482 289 128 18 chr3 105601542 105601897 -53997886 + L2a LINE L2 2731 3123 -303 2 1390 368 256 0 0 chr3 105602258 105602340 -53997443 + ID4 SINE ID 2 83 0 2 1390 426 223 122 26 chr3 105602359 105602474 -53997309 + ID_B1 SINE B4 44 169 -55 2 1390 255 267 53 43 chr3 105602403 105602497 -53997286 + B1F SINE Alu 21 115 -34 2 1390 40 97 0 0 chr3 105603960 105604084 -53995699 + GC_rich Low_complexity Low_complexity 1 124 0 2 1390 180 182 0 0 chr3 105604228 105604272 -53995511 + (CGG)n Simple_repeat Simple_repeat 1 44 0 2 1390 203 320 153 78 chr3 105604706 105604974 -53994809 - L2 LINE L2 -339 3080 2793 2 1390 531 233 29 0 chr3 105604976 105605079 -53994704 + B1F SINE Alu 2 107 -42 2 1390 266 286 101 0 chr3 105605400 105605519 -53994264 - L2 LINE L2 -1042 2377 2247 2 1390 184 338 212 28 chr3 105605768 105606127 -53993656 - L2 LINE L2 -1372 2047 1623 2 1390 319 385 56 0 chr3 105606164 105606307 -53993476 + MER91A DNA Tip100 1 151 -45 2 1390 227 54 0 26 chr3 105607315 105607353 -53992430 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 2 1390 439 293 7 36 chr3 105607353 105607491 -53992292 - B1F1 SINE Alu -11 138 5 2 1390 617 204 15 8 chr3 105607522 105607655 -53992128 + MER3 DNA MER1_type 76 209 0 2 1390 237 246 49 0 chr3 105607613 105607674 -53992109 - MER3 DNA MER1_type -120 89 26 2 1390 243 286 32 0 chr3 105608802 105608865 -53990918 - ID4 SINE ID -18 65 1 2 1390 183 293 69 0 chr3 105609207 105609265 -53990518 + L2a LINE L2 3305 3366 -60 2 1390 894 248 15 5 chr3 105609284 105609487 -53990296 + B3 SINE B2 7 211 -5 2 1390 741 284 38 30 chr3 105609619 105609855 -53989928 + Charlie10 DNA MER1_type 7 244 -2578 2 1390 443 319 12 43 chr3 105610026 105610190 -53989593 + MIR SINE MIR 13 171 -91 2 1390 485 176 203 32 chr3 105610256 105610379 -53989404 - B1_Mur2 SINE Alu -5 144 1 2 1390 271 298 22 168 chr3 105610844 105610981 -53988802 + PB1D9 SINE Alu 1 117 -3 2 1390 512 65 321 45 chr3 105611209 105611321 -53988462 - B2_Mm2 SINE B2 -6 189 47 2 1390 209 283 49 16 chr3 105612011 105612072 -53987711 + MIRc SINE MIR 52 114 -154 2 1390 429 20 0 0 chr3 105612594 105612644 -53987139 + (GGAA)n Simple_repeat Simple_repeat 3 52 0 2 1390 284 0 28 0 chr3 105612711 105612747 -53987036 + (CA)n Simple_repeat Simple_repeat 2 38 0 2 1390 814 327 39 11 chr3 105612959 105613243 -53986540 + B4 SINE B4 1 292 0 2 1390 342 0 0 0 chr3 105613441 105613479 -53986304 + (TC)n Simple_repeat Simple_repeat 2 39 0 2 1390 423 0 0 0 chr3 105613479 105613525 -53986258 + (TG)n Simple_repeat Simple_repeat 2 48 0 2 1390 180 0 0 0 chr3 105613741 105613761 -53986022 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 2 1390 1128 49 42 0 chr3 105613815 105613957 -53985826 + B1_Mus1 SINE Alu 1 148 0 2 1390 270 0 0 0 chr3 105614466 105614496 -53985287 + (TG)n Simple_repeat Simple_repeat 1 30 0 2 1390 381 331 68 75 chr3 105614514 105614779 -53985004 - B4 SINE B4 -27 265 3 2 1390 210 71 0 0 chr3 105614874 105614902 -53984881 + (TGG)n Simple_repeat Simple_repeat 1 28 0 2 1390 228 220 0 20 chr3 105616049 105616100 -53983683 - PB1D7 SINE Alu -70 50 1 2 1390 877 234 108 10 chr3 105616164 105616367 -53983416 + ID_B1 SINE B4 1 223 -1 2 1390 1122 148 21 0 chr3 105616370 105616559 -53983224 + B2_Mm2 SINE B2 2 194 -1 2 1390 347 191 0 29 chr3 105617126 105617196 -53982587 + ID4_ SINE ID 3 70 -13 2 1390 250 271 75 108 chr3 105617712 105617832 -53981951 - PB1D10 SINE Alu -1 116 1 2 1390 297 109 0 0 chr3 105619355 105619410 -53980373 + (GGGA)n Simple_repeat Simple_repeat 4 58 0 2 1390 818 225 37 63 chr3 105619481 105619733 -53980050 + RLTR11A LTR ERVK 173 436 -124 2 1390 225 0 0 0 chr3 105619733 105619758 -53980025 + (TA)n Simple_repeat Simple_repeat 1 25 0 2 1390 818 211 28 68 chr3 105619758 105619796 -53979987 + RLTR11A LTR ERVK 429 464 -64 2 1390 197 365 0 13 chr3 105619823 105619898 -53979885 - MIRb SINE MIR -173 95 22 2 1390 338 291 84 69 chr3 105620263 105620466 -53979317 - MIR SINE MIR -13 249 44 2 1390 188 135 27 0 chr3 105620913 105620950 -53978833 + CT-rich Low_complexity Low_complexity 3 40 0 2 1390 842 182 0 34 chr3 105620950 105621098 -53978685 - B1_Mus1 SINE Alu -5 143 1 2 1390 442 314 56 30 chr3 105621254 105621514 -53978269 - LTR81B LTR ERV1? 0 1393 885 2 1390 216 0 0 0 chr3 105622057 105622081 -53977702 + (TG)n Simple_repeat Simple_repeat 2 25 0 2 1390 890 245 73 136 chr3 105622474 105622857 -53976926 + MTEb LTR MaLR 1 359 -20 2 1390 673 273 92 144 chr3 105623956 105624114 -53975669 + MLT1A0 LTR MaLR 2 162 -212 2 1390 422 288 114 0 chr3 105624114 105624246 -53975537 + RSINE1 SINE B4 2 148 -17 2 1390 673 273 90 154 chr3 105624246 105624481 -53975302 + MLT1A0 LTR MaLR 152 365 0 2 1390 241 155 15 108 chr3 105624713 105624778 -53975005 - ID4 SINE ID -3 80 22 2 1390 273 374 17 0 chr3 105625059 105625174 -53974609 + MIRc SINE MIR 48 164 -104 2 1390 1056 271 82 16 chr3 105625239 105625554 -53974229 + MTEa LTR MaLR 10 345 -34 2 1390 348 24 0 0 chr3 105625916 105625957 -53973826 + (CA)n Simple_repeat Simple_repeat 2 42 0 2 1390 460 276 67 33 chr3 105626319 105626469 -53973314 + RSINE1 SINE B4 3 157 -8 2 1390 24 0 0 0 chr3 105626469 105626493 -53973290 + AT_rich Low_complexity Low_complexity 1 24 0 2 1390 486 236 165 0 chr3 105626636 105626763 -53973020 + B1_Mur2 SINE Alu 2 149 0 2 1390 411 113 0 0 chr3 105627041 105627112 -53972671 + (TGG)n Simple_repeat Simple_repeat 1 71 0 2 1390 261 246 0 17 chr3 105627554 105627612 -53972171 + CT-rich Low_complexity Low_complexity 6 62 0 2 1390 556 298 0 0 chr3 105628005 105628146 -53971637 + RSINE1 SINE B4 3 143 -22 2 1390 333 0 0 0 chr3 105628149 105628186 -53971597 + (CA)n Simple_repeat Simple_repeat 2 38 0 2 1390 251 214 14 0 chr3 105628192 105628262 -53971521 + GA-rich Low_complexity Low_complexity 1 71 0 2 1390 306 239 97 14 chr3 105629304 105629376 -53970407 + ID4_ SINE ID 2 79 -4 2 1390 24 0 0 0 chr3 105630042 105630066 -53969717 + AT_rich Low_complexity Low_complexity 1 24 0 2 1390 295 270 22 0 chr3 105630122 105630203 -53969580 + ID4_ SINE ID 2 87 -65 2 1390 355 200 165 0 chr3 105630248 105630333 -53969450 - B1F2 SINE Alu -7 142 44 2 1390 646 301 139 46 chr3 105630468 105631696 -53968087 + L1M5 LINE L1 3025 4366 -1780 2 1390 688 172 16 8 chr3 105631730 105631859 -53967924 + B1_Mur1 SINE Alu 10 139 -10 2 1390 805 205 34 106 chr3 105631920 105632127 -53967656 + B3A SINE B2 5 196 -2 2 1390 389 222 12 0 chr3 105632178 105632259 -53967524 + PB1D10 SINE Alu 29 110 -7 2 1390 828 192 0 20 chr3 105632896 105633045 -53966738 + B1_Mus1 SINE Alu 2 147 -1 2 1390 216 0 0 0 chr3 105633112 105633136 -53966647 + (GTTTG)n Simple_repeat Simple_repeat 1 24 0 2 1390 252 194 93 40 chr3 105633140 105633215 -53966568 - ID4_ SINE ID -2 81 3 2 1390 398 259 61 26 chr3 105633711 105633826 -53965957 + PB1D7 SINE Alu 1 119 -1 2 1390 232 312 0 0 chr3 105634075 105634123 -53965660 + ID4_ SINE ID 25 72 -11 2 1390 680 297 77 19 chr3 105635137 105635398 -53964385 + B4A SINE B4 3 278 -14 2 1390 390 21 0 0 chr3 105635438 105635485 -53964298 + (CA)n Simple_repeat Simple_repeat 1 47 0 2 1390 797 223 0 0 chr3 105635792 105635940 -53963843 - B1_Mur3 SINE Alu -1 148 1 2 1390 355 225 12 12 chr3 105636610 105636691 -53963092 + PB1D7 SINE Alu 21 101 -19 2 1390 654 206 13 0 chr3 105636696 105636825 -53962958 + B1_Mur1 SINE Alu 1 141 -8 2 1390 597 283 40 60 chr3 105636840 105637001 -53962782 + B3A SINE B2 4 170 -28 2 1390 2382 136 19 6 chr3 105637001 105637363 -53962420 - ORR1B2 LTR MaLR 0 367 1 2 1390 597 283 40 60 chr3 105637363 105637400 -53962383 + B3A SINE B2 171 198 0 2 1390 1150 309 75 74 chr3 105637564 105638269 -53961514 + Kanga1c DNA Tc2 6 711 -18 2 1390 472 282 38 0 chr3 105639160 105639291 -53960492 - B3 SINE B2 -79 137 2 2 1390 21 36 0 0 chr3 105639488 105639516 -53960267 + AT_rich Low_complexity Low_complexity 1 28 0 2 1390 216 0 0 0 chr3 105639566 105639590 -53960193 + (T)n Simple_repeat Simple_repeat 1 24 0 2 1390 1270 34 0 0 chr3 105639590 105639737 -53960046 - B1_Mus2 SINE Alu 0 147 1 2 1390 918 234 24 0 chr3 105639797 105640006 -53959777 - ID_B1 SINE B4 -8 216 3 2 1390 294 312 12 0 chr3 105640028 105640108 -53959675 + ID4_ SINE ID 3 83 0 2 1390 424 345 50 0 chr3 105640320 105640459 -53959324 - RSINE1 SINE B4 -9 156 11 2 1390 328 275 12 0 chr3 105640805 105640885 -53958898 + ID4 SINE ID 3 83 0 3 1390 473 270 9 0 chr3 105640898 105641013 -53958770 - PB1D10 SINE Alu -1 116 1 3 1390 1227 88 59 0 chr3 105641261 105641431 -53958352 + B2_Mm1t SINE B2 1 180 -13 3 1390 348 126 14 17 chr3 105641515 105641590 -53958193 + B2_Mm2 SINE B2 47 124 -92 3 1390 189 0 0 0 chr3 105641600 105641621 -53958162 + (TAAA)n Simple_repeat Simple_repeat 1 21 0 3 1390 1982 153 7 121 chr3 105642262 105642693 -53957090 - RLTR14 LTR ERV1 0 382 1 3 1390 586 295 0 15 chr3 105643479 105643613 -53956170 + RSINE1 SINE B4 3 134 -31 3 1390 513 0 0 0 chr3 105643626 105643683 -53956100 + (TAGA)n Simple_repeat Simple_repeat 4 60 0 3 1390 884 196 0 0 chr3 105643689 105643837 -53955946 + B1_Mur3 SINE Alu 2 149 0 3 1390 242 367 0 30 chr3 105643861 105643993 -53955790 + MER3 DNA MER1_type 29 156 -53 3 1391 359 246 21 91 chr3 105644179 105644322 -53955461 - B4A SINE B4 -9 283 151 3 1391 327 349 17 66 chr3 105644546 105644727 -53955056 - MER20 DNA MER1_type -1 218 47 3 1391 385 279 0 0 chr3 105645322 105645426 -53954357 + (TG)n Simple_repeat Simple_repeat 1 104 0 3 1391 252 265 0 0 chr3 105645441 105645588 -53954195 + (TG)n Simple_repeat Simple_repeat 1 147 0 3 1391 1340 243 148 0 chr3 105645612 105645990 -53953793 - Lx8 LINE L1 -352 7121 6688 3 1391 1952 119 26 0 chr3 105647396 105647707 -53952076 - ORR1A2 LTR MaLR -8 319 1 3 1391 1424 81 0 5 chr3 105647855 105648042 -53951741 - B2_Mm2 SINE B2 -7 188 3 3 1391 289 277 35 35 chr3 105648114 105648200 -53951583 + PB1D10 SINE Alu 1 86 -31 3 1391 841 304 96 8 chr3 105648323 105648678 -53951105 - Lx8 LINE L1 -145 7328 6943 3 1391 195 263 0 0 chr3 105648701 105648758 -53951025 - MIRc SINE MIR -135 133 77 3 1391 243 0 0 0 chr3 105649075 105649102 -53950681 + (T)n Simple_repeat Simple_repeat 1 27 0 3 1391 261 0 0 0 chr3 105649125 105649154 -53950629 + (T)n Simple_repeat Simple_repeat 1 29 0 3 1391 306 321 80 7 chr3 105649843 105649981 -53949802 + MER5A1 DNA MER1_type 15 162 -4 3 1391 306 263 97 55 chr3 105650723 105650868 -53948915 - MLT1B LTR MaLR 0 390 240 3 1391 811 250 65 0 chr3 105650942 105651142 -53948641 - ID_B1 SINE B4 -11 213 1 3 1391 243 0 0 0 chr3 105652228 105652255 -53947528 + (A)n Simple_repeat Simple_repeat 1 27 0 3 1391 843 156 21 0 chr3 105652262 105652403 -53947380 + B1_Mur4 SINE Alu 1 144 -6 3 1391 449 296 0 9 chr3 105652653 105652762 -53947021 - B1F SINE Alu -5 144 37 3 1391 266 329 0 0 chr3 105652821 105652900 -53946883 - PB1D10 SINE Alu -27 90 12 3 1391 327 203 116 0 chr3 105652945 105653014 -53946769 - ID4_ SINE ID -4 79 3 3 1391 399 315 0 0 chr3 105653082 105653193 -53946590 + PB1D10 SINE Alu 1 111 -6 3 1391 345 273 9 75 chr3 105653275 105653382 -53946401 + PB1 SINE Alu 9 108 -19 3 1391 459 52 0 0 chr3 105653389 105653447 -53946336 + (CATA)n Simple_repeat Simple_repeat 1 58 0 3 1391 566 254 8 8 chr3 105653451 105653582 -53946201 + ID_B1 SINE B4 92 222 -2 3 1391 285 266 45 27 chr3 105653789 105653901 -53945882 - MLT1B LTR MaLR -218 172 59 3 1391 338 319 16 57 chr3 105653922 105654045 -53945738 - MTEa LTR MaLR -187 192 75 3 1391 1134 68 7 0 chr3 105654048 105654194 -53945589 + B1_Mus1 SINE Alu 2 148 0 3 1391 212 86 29 0 chr3 105654194 105654229 -53945554 + (CAAAAA)n Simple_repeat Simple_repeat 6 41 0 3 1391 265 179 19 184 chr3 105654235 105654338 -53945445 - MTEa LTR MaLR -293 86 1 3 1391 549 0 0 0 chr3 105654374 105654435 -53945348 + (TC)n Simple_repeat Simple_repeat 2 62 0 3 1391 556 185 0 9 chr3 105654435 105654544 -53945239 - B1_Mur2 SINE Alu -10 139 32 3 1391 352 238 38 53 chr3 105654603 105654736 -53945047 - RLTR11A2 LTR ERVK -39 414 284 3 1391 780 264 23 38 chr3 105654847 105655149 -53944634 - RLTR11A2 LTR ERVK -153 292 2 3 1391 1181 238 66 13 chr3 105655255 105655618 -53944165 - MTD LTR MaLR 0 419 10 3 1391 1693 128 63 16 chr3 105656038 105656341 -53943442 - ORR1A2 LTR MaLR 0 327 11 3 1391 273 229 0 46 chr3 105657197 105657284 -53942499 - MER33 DNA MER1_type 0 324 242 3 1391 490 240 0 0 chr3 105657487 105657583 -53942200 - RSINE1 SINE B4 -31 134 39 3 1391 290 338 48 87 chr3 105657629 105657859 -53941924 + L2c LINE L2 3151 3371 -4 3 1391 405 269 62 6 chr3 105657893 105658054 -53941729 + L2a LINE L2 2901 3070 -349 3 1391 316 266 53 38 chr3 105658225 105658358 -53941425 + L2a LINE L2 3282 3416 -10 3 1391 310 325 31 31 chr3 105659199 105659326 -53940457 + MIRb SINE MIR 69 195 -73 3 1391 1379 56 78 0 chr3 105659329 105659489 -53940294 + B2_Mm1a SINE B2 1 174 -19 3 1391 315 0 0 0 chr3 105659489 105659524 -53940259 + (TAAA)n Simple_repeat Simple_repeat 3 37 0 3 1391 1379 56 78 0 chr3 105659524 105659542 -53940241 + B2_Mm1a SINE B2 175 192 -1 3 1391 1231 50 0 0 chr3 105659556 105659717 -53940066 + B2_Mm2 SINE B2 1 161 -34 3 1391 252 86 0 0 chr3 105659718 105659753 -53940030 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 3 1391 251 113 113 0 chr3 105661555 105661608 -53938175 - L1MEe LINE L1 -3787 1067 1009 3 1391 288 154 0 0 chr3 105661634 105661686 -53938097 + CT-rich Low_complexity Low_complexity 4 55 0 3 1391 3903 98 109 26 chr3 105661687 105662359 -53937424 - RMER19A LTR ERVK 0 737 8 3 1391 378 0 0 0 chr3 105662359 105662401 -53937382 + (TTCC)n Simple_repeat Simple_repeat 1 42 0 3 1391 1028 286 102 56 chr3 105662422 105662962 -53936821 - L1MB3 LINE L1 -54 6129 5565 3 1391 312 102 0 0 chr3 105663030 105663079 -53936704 + (TG)n Simple_repeat Simple_repeat 2 50 0 3 1391 354 303 50 0 chr3 105663104 105663203 -53936580 - RSINE1 SINE B4 -60 105 2 3 1391 249 301 124 65 chr3 105663391 105663729 -53936054 - L1MEd LINE L1 -5234 885 528 3 1391 185 310 11 75 chr3 105664239 105664333 -53935450 - MIR SINE MIR -86 176 89 3 1391 291 209 160 34 chr3 105664953 105665072 -53934711 + L1M4 LINE L1 449 582 -5960 3 1391 717 253 100 22 chr3 105665083 105665313 -53934470 + L1M4 LINE L1 716 963 -5579 3 1391 245 268 18 0 chr3 105665360 105665416 -53934367 - ID4_ SINE ID -23 60 4 3 1391 236 224 30 0 chr3 105665431 105665498 -53934285 - B1_Mus2 SINE Alu -7 140 72 3 1391 381 248 28 9 chr3 105665515 105665621 -53934162 + PB1D10 SINE Alu 10 117 0 3 1391 22 0 0 0 chr3 105666201 105666223 -53933560 + AT_rich Low_complexity Low_complexity 1 22 0 3 1391 470 216 19 29 chr3 105666507 105666612 -53933171 - PB1D10 SINE Alu -5 112 9 3 1391 571 211 8 16 chr3 105666839 105666964 -53932819 - URR1A DNA MER1_type -96 130 7 3 1391 410 236 46 19 chr3 105667478 105667586 -53932197 - PB1D7 SINE Alu -5 115 5 3 1391 921 278 0 5 chr3 105668151 105668357 -53931426 + MER58A DNA MER1_type 1 205 -19 3 1391 256 261 169 0 chr3 105668745 105668810 -53930973 - B3A SINE B2 -120 78 3 3 1391 430 319 24 12 chr3 105668826 105668994 -53930789 - L1M4 LINE L1 -501 5682 5513 3 1391 927 231 4 115 chr3 105669057 105669301 -53930482 - MTEa LTR MaLR -161 218 2 3 1391 404 271 73 46 chr3 105669515 105669666 -53930117 - RSINE1 SINE B4 -9 156 2 3 1391 775 282 128 69 chr3 105669669 105670346 -53929437 - L1M4 LINE L1 -780 5366 4650 3 1391 198 0 0 0 chr3 105670465 105670487 -53929296 + (T)n Simple_repeat Simple_repeat 1 22 0 3 1391 181 318 38 53 chr3 105670670 105670803 -53928980 + L2c LINE L2 3023 3153 -234 3 1391 1118 111 0 16 chr3 105671918 105672101 -53927682 + (CATATA)n Simple_repeat Simple_repeat 1 180 0 3 1391 2686 235 104 52 chr3 105672167 105672983 -53926800 - RMER13A LTR ERVK 0 860 2 3 1391 711 255 46 0 chr3 105672985 105673138 -53926645 - ID_B1 SINE B4 -63 161 2 3 1391 25 0 0 0 chr3 105673442 105673467 -53926316 + AT_rich Low_complexity Low_complexity 1 25 0 3 1391 282 227 88 77 chr3 105674121 105674209 -53925574 + PB1D10 SINE Alu 9 97 -23 3 1391 432 209 0 71 chr3 105674256 105674354 -53925429 + RSINE1 SINE B4 2 92 -73 3 1391 1049 190 15 10 chr3 105674352 105674554 -53925229 - MTD LTR MaLR -211 208 6 3 1391 222 171 0 0 chr3 105675852 105675893 -53923890 + CT-rich Low_complexity Low_complexity 1 41 0 3 1391 257 299 109 8 chr3 105676026 105676154 -53923629 - MIR SINE MIR 0 262 122 3 1391 750 94 23 16 chr3 105676155 105676284 -53923499 + L1Md_F2 LINE L1 6452 6581 -1 3 1391 199 216 0 38 chr3 105676292 105676345 -53923438 - MIRm SINE MIR -120 156 106 3 1391 782 269 20 79 chr3 105676687 105676990 -53922793 - B4 SINE B4 -7 285 1 3 1391 557 270 51 0 chr3 105676990 105677127 -53922656 - ID_B1 SINE B4 -1 223 80 3 1391 195 292 61 15 chr3 105677304 105677370 -53922413 - L3 LINE CR1 -2311 2178 2110 3 1391 1022 182 43 0 chr3 105677498 105677685 -53922098 - B3 SINE B2 -18 198 4 3 1391 320 346 63 55 chr3 105677893 105677970 -53921813 - MIR SINE MIR 0 262 188 3 1391 624 220 63 7 chr3 105677970 105678112 -53921671 + RSINE1 SINE B4 2 151 -14 3 1391 414 0 0 0 chr3 105678112 105678158 -53921625 + (CA)n Simple_repeat Simple_repeat 2 47 0 3 1391 320 346 63 55 chr3 105678158 105678333 -53921450 - MIR SINE MIR -75 187 8 3 1391 254 291 154 10 chr3 105679654 105679758 -53920025 - MIRb SINE MIR -116 152 34 3 1391 374 347 71 15 chr3 105680441 105680637 -53919146 + L1MEc LINE L1 33 239 -6161 3 1391 867 46 18 0 chr3 105680641 105680750 -53919033 - RMER10B LTR ERVL 0 398 288 3 1391 300 384 11 11 chr3 105681234 105681413 -53918370 + RodERV21-int LTR ERV1 1350 1528 -3463 3 1391 2123 149 28 13 chr3 105682109 105682497 -53917286 - RMER10B LTR ERVL 0 398 5 3 1391 691 295 67 17 chr3 105682703 105683003 -53916780 + L1MEc LINE L1 560 874 -5526 3 1391 357 238 58 29 chr3 105683066 105683170 -53916613 - PB1D10 SINE Alu 0 117 11 3 1391 264 341 10 52 chr3 105683263 105683358 -53916425 + B1F1 SINE Alu 1 91 -58 3 1391 602 193 302 123 chr3 105683358 105683666 -53916117 - MTE2a LTR MaLR 0 379 16 3 1391 223 274 0 0 chr3 105683680 105683731 -53916052 + B1_Mur1 SINE Alu 88 138 -11 3 1391 561 15 0 0 chr3 105683930 105683996 -53915787 + (TG)n Simple_repeat Simple_repeat 2 67 0 4 1391 688 233 12 25 chr3 105684204 105684367 -53915416 + B4 SINE B4 1 161 -131 4 1391 436 305 121 0 chr3 105684373 105684563 -53915220 + L1M3 LINE L1 4817 5029 -1111 4 1391 256 222 0 0 chr3 105685705 105685750 -53914033 + B1F SINE Alu 5 49 -100 4 1391 1205 108 0 22 chr3 105685802 105685981 -53913802 - B2_Mm2 SINE B2 -19 176 2 4 1391 2399 172 35 19 chr3 105686000 105686462 -53913321 - Lx3C LINE L1 -4 6972 6504 4 1391 13282 177 94 11 chr3 105686462 105689907 -53909876 - Lx3C LINE L1 -567 6409 2657 4 1391 8049 67 5 8 chr3 105690103 105691729 -53908054 + L1_Mus2 LINE L1 4942 6566 0 4 1391 261 0 0 0 chr3 105691806 105691835 -53907948 + (A)n Simple_repeat Simple_repeat 1 29 0 4 1391 267 330 18 55 chr3 105691944 105692053 -53907730 + MIRb SINE MIR 26 130 -138 4 1391 613 316 4 82 chr3 105692078 105692309 -53907474 + MER20 DNA MER1_type 7 219 0 4 1391 477 0 0 0 chr3 105692436 105692489 -53907294 + (CA)n Simple_repeat Simple_repeat 2 54 0 4 1391 261 274 215 33 chr3 105692638 105692759 -53907024 + MIRb SINE MIR 126 268 0 4 1391 705 272 6 12 chr3 105692828 105692992 -53906791 - RSINE1 SINE B4 0 165 3 4 1391 319 233 126 25 chr3 105693170 105693289 -53906494 - MIRm SINE MIR -119 157 27 4 1391 1017 190 23 14 chr3 105693632 105693851 -53905932 + URR1B DNA MER1_type 5 225 0 4 1391 399 41 0 0 chr3 105693900 105693949 -53905834 + (TG)n Simple_repeat Simple_repeat 1 49 0 4 1391 371 326 150 23 chr3 105694183 105694489 -53905294 - MTEa LTR MaLR 0 379 6 4 1391 231 114 0 0 chr3 105694765 105694800 -53904983 + (A)n Simple_repeat Simple_repeat 1 35 0 4 1391 360 0 0 0 chr3 105695789 105695829 -53903954 + (TC)n Simple_repeat Simple_repeat 1 40 0 4 1391 207 252 0 0 chr3 105696545 105696656 -53903127 + (CA)n Simple_repeat Simple_repeat 1 111 0 4 1391 602 251 95 27 chr3 105696662 105696883 -53902900 - Lx8 LINE L1 -29 7444 7209 4 1391 506 187 0 123 chr3 105699609 105699731 -53900052 - PB1D9 SINE Alu 0 120 14 4 1391 340 296 147 6 chr3 105699617 105699787 -53899996 - B4 SINE B4 -68 224 31 4 1391 214 188 0 111 chr3 105699894 105699934 -53899849 + BC1_Mm scRNA scRNA 2 37 -115 4 1391 1316 90 21 11 chr3 105699934 105700124 -53899659 + B2_Mm2 SINE B2 2 193 -2 4 1391 214 188 0 111 chr3 105700124 105700137 -53899646 + BC1_Mm scRNA scRNA 38 49 -103 4 1391 1595 129 145 11 chr3 105700145 105700427 -53899356 + ORR1B2 LTR MaLR 1 320 -47 4 1391 1257 94 35 0 chr3 105700433 105700604 -53899179 + B2_Mm1t SINE B2 3 179 -14 4 1391 386 78 348 36 chr3 105700651 105700766 -53899017 + B2_Mm2 SINE B2 47 195 0 4 1391 382 58 77 0 chr3 105700764 105700816 -53898967 + ORR1B2 LTR MaLR 312 367 0 4 1391 493 288 45 7 chr3 105700816 105700970 -53898813 + B3A SINE B2 38 197 -1 4 1391 495 0 0 0 chr3 105701677 105701732 -53898051 + (TCCC)n Simple_repeat Simple_repeat 4 58 0 4 1391 258 193 17 17 chr3 105701732 105701790 -53897993 + MTEb LTR MaLR 322 379 0 4 1391 217 355 138 0 chr3 105701790 105701942 -53897841 + MIRb SINE MIR 58 230 -38 4 1391 522 139 10 29 chr3 105703063 105703167 -53896616 - URR1B DNA MER1_type -30 195 94 4 1391 460 190 86 48 chr3 105703222 105703327 -53896456 - URR1B DNA MER1_type -116 109 1 4 1391 300 312 46 0 chr3 105704612 105704748 -53895035 + MIRb SINE MIR 34 179 -97 4 1391 2515 77 12 0 chr3 105705058 105705381 -53894402 - ORR1A2 LTR MaLR 0 327 1 4 1391 337 113 0 0 chr3 105705989 105706042 -53893741 - B3 SINE B2 -161 55 3 4 1391 234 23 45 23 chr3 105706368 105706412 -53893371 + (CAAAAA)n Simple_repeat Simple_repeat 3 47 0 4 1391 280 149 0 0 chr3 105706435 105706482 -53893301 + B3A SINE B2 2 48 -150 4 1391 840 29 0 0 chr3 105706483 105706586 -53893197 + (TG)n Simple_repeat Simple_repeat 2 104 0 4 1391 521 216 20 0 chr3 105706607 105706709 -53893074 - B1_Mur2 SINE Alu -34 115 12 4 1391 277 169 13 133 chr3 105706642 105706717 -53893066 - MT2B LTR ERVL -367 234 169 4 1391 261 0 0 0 chr3 105706848 105706877 -53892906 + (TG)n Simple_repeat Simple_repeat 2 30 0 4 1391 602 0 27 0 chr3 105706983 105707056 -53892727 + (TTTC)n Simple_repeat Simple_repeat 1 75 0 4 1391 319 226 159 9 chr3 105707078 105707185 -53892598 - B1F SINE Alu 0 149 27 4 1391 317 277 97 30 chr3 105707185 105707212 -53892571 - ID_B1 SINE B4 -1 223 81 4 1391 387 263 208 33 chr3 105708793 105709005 -53890778 + MIR SINE MIR 10 258 -4 4 1391 1276 82 18 0 chr3 105709050 105709221 -53890562 + B2_Mm2 SINE B2 3 176 -19 4 1391 526 128 29 0 chr3 105709224 105709326 -53890457 + GA-rich Low_complexity Low_complexity 4 108 0 4 1391 961 246 35 0 chr3 105709681 105709884 -53889899 + B3 SINE B2 2 211 -5 4 1391 977 144 0 7 chr3 105711507 105711654 -53888129 - B1_Mus1 SINE Alu -2 146 1 4 1391 1252 219 48 66 chr3 105711797 105712174 -53887609 - ORR1D2 LTR MaLR 0 370 1 4 1391 198 0 0 0 chr3 105712431 105712453 -53887330 + (TGG)n Simple_repeat Simple_repeat 3 24 0 4 1391 339 225 0 136 chr3 105712457 105712560 -53887223 - B4 SINE B4 -3 289 201 4 1391 738 38 36 36 chr3 105712565 105712675 -53887108 - B1_Mus1 SINE Alu 0 148 39 4 1391 324 283 131 9 chr3 105712669 105712776 -53887007 - B4 SINE B4 -75 217 98 4 1391 369 283 10 0 chr3 105712899 105712998 -53886785 - MTEa LTR MaLR -68 311 212 4 1391 501 292 7 65 chr3 105713017 105713156 -53886627 + B1_Mur1 SINE Alu 3 133 -16 4 1391 198 0 0 0 chr3 105713182 105713204 -53886579 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 4 1391 360 0 0 0 chr3 105714374 105714414 -53885369 + (TG)n Simple_repeat Simple_repeat 1 40 0 4 1391 351 44 0 0 chr3 105714414 105714458 -53885325 + (GA)n Simple_repeat Simple_repeat 1 45 0 4 1391 202 203 81 48 chr3 105714493 105714555 -53885228 + MIRc SINE MIR 104 167 -101 4 1391 313 244 32 32 chr3 105714560 105714653 -53885130 - RSINE1 SINE B4 -1 164 72 4 1391 309 264 0 94 chr3 105714818 105714914 -53884869 - ID_B1 SINE B4 0 224 138 4 1391 262 289 11 32 chr3 105715018 105715111 -53884672 + ID_B1 SINE B4 73 163 -61 4 1391 211 290 41 51 chr3 105715045 105715143 -53884640 + B1F2 SINE Alu 16 112 -37 4 1391 560 59 0 0 chr3 105715766 105715834 -53883949 - ORR1A4 LTR MaLR 0 329 262 4 1391 330 162 29 29 chr3 105715831 105715901 -53883882 + MTD LTR MaLR 350 419 0 4 1391 487 74 25 0 chr3 105716093 105716174 -53883609 + (TA)n Simple_repeat Simple_repeat 1 83 0 4 1391 200 194 0 27 chr3 105716241 105716278 -53883505 - MER91A DNA Tip100 -29 167 136 4 1391 226 328 64 43 chr3 105717567 105717707 -53882076 + MIRb SINE MIR 68 210 -58 4 1391 433 177 310 0 chr3 105717935 105718048 -53881735 + B1_Mus1 SINE Alu 1 148 0 4 1391 1053 60 0 0 chr3 105718056 105718189 -53881594 + B1_Mus1 SINE Alu 15 147 -1 4 1391 231 137 41 0 chr3 105718190 105718263 -53881520 + (CAAA)n Simple_repeat Simple_repeat 1 76 0 4 1391 556 304 12 54 chr3 105718507 105718674 -53881109 - MTEa LTR MaLR -219 160 1 4 1391 346 271 172 7 chr3 105718683 105718828 -53880955 - MLT1B LTR MaLR -99 291 123 4 1391 481 236 104 16 chr3 105718851 105718976 -53880807 + B3 SINE B2 81 216 0 4 1391 302 273 87 48 chr3 105719010 105719114 -53880669 - MLT1B LTR MaLR -282 108 1 4 1391 3134 49 18 8 chr3 105719159 105719551 -53880232 - MTA_Mm LTR MaLR 0 396 1 4 1391 495 0 0 0 chr3 105719605 105719660 -53880123 + (TG)n Simple_repeat Simple_repeat 2 56 0 4 1391 714 219 0 20 chr3 105720078 105720227 -53879556 + B1_Mur1 SINE Alu 4 149 0 4 1391 23 33 0 0 chr3 105720602 105720632 -53879151 + AT_rich Low_complexity Low_complexity 1 30 0 4 1391 403 348 55 12 chr3 105721337 105721500 -53878283 - MER91A DNA Tip100 -12 184 15 4 1391 303 28 0 0 chr3 105721864 105721900 -53877883 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 4 1391 989 182 55 35 chr3 105722127 105722326 -53877457 - B3 SINE B2 0 216 14 4 1391 315 0 0 0 chr3 105722326 105722361 -53877422 + (TC)n Simple_repeat Simple_repeat 2 36 0 4 1391 399 272 282 6 chr3 105722376 105722550 -53877233 - ID_B1 SINE B4 0 224 3 4 1391 186 189 0 0 chr3 105722560 105722597 -53877186 + CT-rich Low_complexity Low_complexity 1 37 0 4 1391 5814 113 30 79 chr3 105723035 105723589 -53876194 - RMER17B LTR ERVK 0 958 400 4 1391 1184 62 0 0 chr3 105723589 105723735 -53876048 + B1_Mus2 SINE Alu 2 147 0 4 1391 5814 113 30 79 chr3 105723735 105723764 -53876019 - RMER17B LTR ERVK -559 399 399 4 1391 297 0 0 0 chr3 105723764 105723797 -53875986 + (GAAA)n Simple_repeat Simple_repeat 2 34 0 4 1391 5814 113 30 79 chr3 105723797 105724145 -53875638 - RMER17B LTR ERVK -559 399 77 4 1391 1600 32 21 0 chr3 105724145 105724334 -53875449 - B2_Mm1t SINE B2 0 193 1 4 1391 5814 113 30 79 chr3 105724334 105724408 -53875375 - RMER17B LTR ERVK -882 76 1 4 1391 462 223 32 0 chr3 105725902 105725996 -53873787 + B1F SINE Alu 42 138 -11 4 1391 457 248 151 8 chr3 105726388 105726514 -53873269 + RSINE1 SINE B4 1 144 -21 4 1391 324 0 0 0 chr3 105726522 105726558 -53873225 + (CA)n Simple_repeat Simple_repeat 1 36 0 4 1391 264 59 0 0 chr3 105726558 105726592 -53873191 + (GA)n Simple_repeat Simple_repeat 1 34 0 4 1391 981 285 31 24 chr3 105727695 105727983 -53871800 - B4 SINE B4 -2 290 1 4 1391 417 70 0 0 chr3 105728482 105728539 -53871244 + (TG)n Simple_repeat Simple_repeat 2 58 0 4 1391 597 222 8 0 chr3 105728573 105728690 -53871093 - RSINE1 SINE B4 -43 122 5 4 1391 1275 27 0 0 chr3 105730269 105730416 -53869367 - B1_Mm SINE Alu 0 147 1 4 1391 372 212 12 8 chr3 105730596 105730696 -53869087 + B1F SINE Alu 5 100 -20 4 1391 263 200 0 18 chr3 105731095 105731151 -53868632 - ID4_ SINE ID -21 62 8 4 1391 342 194 0 0 chr3 105731298 105731370 -53868413 + (TG)n Simple_repeat Simple_repeat 2 73 0 4 1391 509 257 51 7 chr3 105731905 105732042 -53867741 + ID_B1 SINE B4 82 224 0 5 1391 781 215 87 0 chr3 105732046 105732241 -53867542 + B3 SINE B2 1 212 -4 5 1391 867 216 5 5 chr3 105732544 105732735 -53867048 + B3 SINE B2 2 192 -24 5 1391 278 289 60 0 chr3 105733202 105733285 -53866498 - MER44B DNA MER2_type -450 100 13 5 1391 1870 30 73 0 chr3 105733351 105733583 -53866200 + L1Md_F2 LINE L1 6334 6582 0 5 1391 1047 119 201 11 chr3 105733590 105733769 -53866014 - B3 SINE B2 -2 214 2 5 1391 655 206 13 40 chr3 105734310 105734462 -53865321 + B1_Mur2 SINE Alu 2 149 0 5 1391 340 200 67 0 chr3 105734826 105734901 -53864882 + PB1D7 SINE Alu 35 114 -6 5 1391 548 188 119 8 chr3 105734910 105735044 -53864739 + B1_Mur1 SINE Alu 1 149 0 5 1391 263 286 55 37 chr3 105735067 105735176 -53864607 + RSINE1 SINE B4 3 113 -52 5 1391 226 0 59 0 chr3 105735188 105735222 -53864561 + (CA)n Simple_repeat Simple_repeat 2 37 0 5 1391 469 278 124 20 chr3 105735684 105735886 -53863897 - ID_B1 SINE B4 0 224 2 5 1391 29 0 0 0 chr3 105736198 105736227 -53863556 + AT_rich Low_complexity Low_complexity 1 29 0 5 1391 2285 51 0 0 chr3 105736227 105736500 -53863283 - L1_Mus1 LINE L1 -664 5903 5631 5 1391 1427 46 0 0 chr3 105736500 105736673 -53863110 + L1_Mus1 LINE L1 6395 6567 0 5 1391 1359 79 6 0 chr3 105736737 105736915 -53862868 - B2_Mm1a SINE B2 -14 179 1 5 1391 356 260 73 0 chr3 105737220 105737316 -53862467 + PB1D7 SINE Alu 1 103 -17 5 1391 232 292 0 0 chr3 105737689 105737737 -53862046 - B3 SINE B2 -20 196 149 5 1391 339 277 21 21 chr3 105738294 105738390 -53861393 - B3 SINE B2 -119 97 2 5 1391 462 256 269 11 chr3 105738410 105738504 -53861279 - Lx8 LINE L1 -7 7466 7287 5 1391 247 178 96 43 chr3 105738504 105738598 -53861185 - RMER1C Other Other -138 1204 1106 5 1391 462 256 269 11 chr3 105738598 105738678 -53861105 - Lx8 LINE L1 -7 7286 7130 5 1391 513 277 7 47 chr3 105738998 105739146 -53860637 - RSINE1 SINE B4 -21 144 3 5 1391 354 61 0 0 chr3 105739189 105739238 -53860545 + (A)n Simple_repeat Simple_repeat 1 49 0 5 1391 1508 203 25 76 chr3 105740144 105740361 -53859422 - ORR1D1 LTR MaLR 0 374 172 5 1391 207 0 0 0 chr3 105740361 105740384 -53859399 + (GGGA)n Simple_repeat Simple_repeat 3 25 0 5 1391 1508 203 25 76 chr3 105740384 105740560 -53859223 - ORR1D1 LTR MaLR -203 171 1 5 1391 3239 98 59 0 chr3 105741010 105741498 -53858285 - L1_Mus3 LINE L1 -1291 4592 4076 5 1391 8322 82 27 7 chr3 105741477 105743494 -53856289 + L1_Mus3 LINE L1 4588 6636 -2 5 1391 1106 65 0 0 chr3 105743496 105743635 -53856148 + B1_Mus2 SINE Alu 1 139 -8 5 1391 952 94 36 0 chr3 105744116 105744254 -53855529 + B1_Mus1 SINE Alu 5 147 -1 5 1391 469 333 48 32 chr3 105744674 105744863 -53854920 - B3A SINE B2 -6 192 1 5 1391 345 264 37 190 chr3 105745221 105745299 -53854484 - B4 SINE B4 -7 285 201 5 1391 540 53 0 26 chr3 105745299 105745376 -53854407 - B1_Mur4 SINE Alu 0 150 76 5 1391 345 264 37 190 chr3 105745376 105745548 -53854235 - B4 SINE B4 -7 200 9 5 1391 843 225 27 21 chr3 105746358 105746544 -53853239 + B3A SINE B2 1 187 -11 5 1391 14048 83 32 19 chr3 105746843 105749516 -53850267 + L1VL4 LINE L1 249 2956 -603 5 1391 6282 144 86 14 chr3 105749517 105750679 -53849104 + Lx2 LINE L1 5739 6984 -13 5 1391 189 0 0 0 chr3 105750688 105750709 -53849074 + (CAAA)n Simple_repeat Simple_repeat 1 21 0 5 1391 226 206 111 0 chr3 105751011 105751074 -53848709 - L1MC LINE L1 -2109 5773 5704 5 1391 431 278 115 16 chr3 105751112 105751295 -53848488 - MIR SINE MIR -44 218 18 5 1391 263 358 162 13 chr3 105751322 105751557 -53848226 + L2 LINE L2 2766 3035 -384 5 1391 344 359 48 6 chr3 105751547 105751715 -53848068 + L2a LINE L2 2995 3169 -257 5 1391 935 257 101 54 chr3 105751932 105752176 -53847607 + RMER5 LTR ERV1 87 336 -198 5 1391 829 200 82 31 chr3 105752176 105752372 -53847411 - B3 SINE B2 -10 206 1 5 1391 935 257 101 54 chr3 105752372 105752555 -53847228 + RMER5 LTR ERV1 337 534 0 5 1391 254 274 16 0 chr3 105752643 105752705 -53847078 - PB1D7 SINE Alu -51 69 7 5 1391 910 280 25 0 chr3 105752951 105753151 -53846632 - B3 SINE B2 -11 205 1 5 1391 1136 45 0 0 chr3 105753350 105753484 -53846299 + B1_Mus2 SINE Alu 2 135 -12 5 1391 211 233 0 0 chr3 105753873 105753916 -53845867 - ID4 SINE ID -33 50 8 5 1391 236 254 0 60 chr3 105754191 105754258 -53845525 + RLTR20C LTR ERVK 98 160 -374 5 1391 3002 250 116 25 chr3 105754838 105755835 -53843948 + Lx8 LINE L1 6185 7272 -201 5 1391 1310 85 31 11 chr3 105755956 105756147 -53843636 + B2_Mm2 SINE B2 1 195 0 5 1391 294 229 80 40 chr3 105756164 105756264 -53843519 + B1F2 SINE Alu 46 149 0 5 1391 1123 101 6 0 chr3 105756275 105756444 -53843339 + B2_Mm1t SINE B2 2 171 -22 5 1391 244 198 191 34 chr3 105757298 105757387 -53842396 + MIRb SINE MIR 117 219 -49 5 1391 825 269 25 5 chr3 105757663 105757861 -53841922 + B3 SINE B2 12 213 -3 5 1391 23 0 0 0 chr3 105758539 105758562 -53841221 + AT_rich Low_complexity Low_complexity 1 23 0 5 1391 531 246 36 36 chr3 105759296 105759435 -53840348 - RSINE1 SINE B4 -25 140 2 5 1391 417 216 280 25 chr3 105760312 105760469 -53839314 - MER20 DNA MER1_type -1 218 22 5 1391 506 258 79 6 chr3 105760839 105761003 -53838780 + B3A SINE B2 23 198 0 5 1391 530 220 119 15 chr3 105763117 105763251 -53836532 - B1_Mur2 SINE Alu 0 149 2 5 1391 484 188 102 66 chr3 105763538 105763675 -53836108 + B1_Mur1 SINE Alu 1 142 -7 5 1391 828 273 24 0 chr3 105763693 105763902 -53835881 + B3 SINE B2 1 214 -2 5 1391 682 141 54 8 chr3 105764013 105764142 -53835641 + B2_Mm2 SINE B2 35 169 -26 5 1391 1294 200 109 26 chr3 105765190 105765529 -53834254 - ORR1D1 LTR MaLR 0 374 8 5 1391 766 228 161 73 chr3 105765848 105766108 -53833675 - B4 SINE B4 -8 284 2 5 1391 445 108 0 0 chr3 105766458 105766523 -53833260 + B1_Mus1 SINE Alu 2 66 -82 5 1391 557 286 15 0 chr3 105768492 105768625 -53831158 - B1_Mus1 SINE Alu 0 148 14 5 1391 379 198 28 94 chr3 105768554 105768660 -53831123 - MT2B2 LTR ERVL -344 240 142 5 1391 493 265 160 16 chr3 105769449 105769637 -53830146 + B3A SINE B2 1 215 -1 5 1391 244 191 21 0 chr3 105772165 105772212 -53827571 + RSINE1 SINE B4 3 50 -115 5 1391 1592 95 41 12 chr3 105772718 105772964 -53826819 + L1_Mus3 LINE L1 6384 6636 -2 5 1391 2888 116 72 22 chr3 105774022 105774538 -53825245 - Lx3C LINE L1 0 7058 6404 5 1391 487 105 53 0 chr3 105774521 105774597 -53825186 + Lx3C LINE L1 6326 6405 -571 5 1392 278 326 112 0 chr3 105778482 105778580 -53821203 + L2a LINE L2 3312 3420 -6 5 1392 267 292 14 14 chr3 105779219 105779292 -53820491 + ID2 SINE ID 2 74 -9 5 1392 522 0 0 0 chr3 105779302 105779360 -53820423 + (CAAAA)n Simple_repeat Simple_repeat 5 62 0 5 1392 180 111 0 0 chr3 105779949 105779976 -53819807 + (TATATG)n Simple_repeat Simple_repeat 1 27 0 5 1392 210 37 0 0 chr3 105780092 105780119 -53819664 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 5 1392 1203 51 0 0 chr3 105780119 105780256 -53819527 - B1_Mus2 SINE Alu -9 138 2 5 1392 203 150 17 0 chr3 105781955 105782015 -53817768 + (TA)n Simple_repeat Simple_repeat 2 62 0 5 1392 448 278 84 4 chr3 105782135 105782271 -53817512 + B1F SINE Alu 2 143 -6 5 1392 504 93 0 0 chr3 105782272 105782347 -53817436 + (GA)n Simple_repeat Simple_repeat 2 76 0 5 1392 195 42 0 0 chr3 105784341 105784365 -53815418 + (TC)n Simple_repeat Simple_repeat 1 24 0 5 1392 5822 117 35 23 chr3 105784380 105785276 -53814507 - RMER17A2 LTR ERVK 0 906 1 5 1392 293 0 0 26 chr3 105785610 105785648 -53814135 + (GTGTG)n Simple_repeat Simple_repeat 3 39 0 5 1392 204 40 0 0 chr3 105785672 105785697 -53814086 + (TG)n Simple_repeat Simple_repeat 1 25 0 5 1392 612 77 0 0 chr3 105785697 105785787 -53813996 + (GA)n Simple_repeat Simple_repeat 1 91 0 5 1392 474 33 0 0 chr3 105785836 105785896 -53813887 + (TG)n Simple_repeat Simple_repeat 1 60 0 5 1392 874 251 51 10 chr3 105785896 105786083 -53813700 - B4A SINE B4 -95 197 3 5 1392 1147 228 19 0 chr3 105787184 105787395 -53812388 - B3 SINE B2 0 216 2 5 1392 858 34 17 8 chr3 105787525 105787644 -53812139 + (GAA)n Simple_repeat Simple_repeat 1 120 0 5 1392 299 25 0 24 chr3 105788351 105788392 -53811391 + (CA)n Simple_repeat Simple_repeat 2 41 0 5 1392 480 77 0 0 chr3 105788852 105788917 -53810866 + (TAA)n Simple_repeat Simple_repeat 2 66 0 5 1392 627 310 0 50 chr3 105790366 105790546 -53809237 - B3A SINE B2 -4 194 24 5 1392 573 76 0 0 chr3 105790863 105790942 -53808841 + (GAAA)n Simple_repeat Simple_repeat 2 80 0 5 1392 277 226 38 0 chr3 105791008 105791061 -53808722 + B3 SINE B2 131 185 -31 5 1392 360 0 0 0 chr3 105791764 105791804 -53807979 + (TG)n Simple_repeat Simple_repeat 1 40 0 5 1392 529 324 21 7 chr3 105791805 105791948 -53807835 - RSINE1 SINE B4 -19 146 2 5 1392 4411 152 97 20 chr3 105792276 105793114 -53806669 + RLTR13D6 LTR ERVK 1 902 0 5 1392 2101 181 165 7 chr3 105793340 105793777 -53806006 + RMER20A LTR ERVK 11 516 0 5 1392 379 277 134 0 chr3 105794515 105794627 -53805156 - RSINE1 SINE B4 -36 129 3 5 1392 180 0 0 0 chr3 105797175 105797195 -53802588 + (T)n Simple_repeat Simple_repeat 1 20 0 5 1392 22 0 0 0 chr3 105797519 105797541 -53802242 + AT_rich Low_complexity Low_complexity 1 22 0 5 1392 340 276 36 54 chr3 105797805 105797916 -53801867 - PB1D9 SINE Alu 0 120 12 5 1392 312 282 12 49 chr3 105797978 105798060 -53801723 + ID4 SINE ID 1 79 -4 5 1392 1283 192 0 9 chr3 105798467 105798683 -53801100 + B3 SINE B2 1 214 -2 6 1392 3428 29 42 0 chr3 105798752 105799132 -53800651 - MTA_Mm LTR MaLR 0 396 1 6 1392 360 237 213 66 chr3 105799205 105799327 -53800456 - B1_Mur2 SINE Alu -9 140 1 6 1392 657 25 0 0 chr3 105800995 105801074 -53798709 + (CA)n Simple_repeat Simple_repeat 1 79 0 6 1392 214 385 139 34 chr3 105801748 105802014 -53797769 + L2a LINE L2 2958 3251 -175 6 1392 302 296 61 0 chr3 105802015 105802130 -53797653 + MER94 DNA AcHobo 8 129 -5 6 1392 298 45 42 56 chr3 105803413 105803484 -53796299 + (GGGTG)n Simple_repeat Simple_repeat 5 74 0 6 1392 450 0 0 0 chr3 105804834 105804884 -53794899 + (TG)n Simple_repeat Simple_repeat 2 51 0 6 1392 536 85 24 0 chr3 105805315 105805397 -53794386 + (TCCC)n Simple_repeat Simple_repeat 2 85 0 6 1392 7439 137 35 45 chr3 105805415 105806519 -53793264 - L1_Mus3 LINE L1 0 6997 5943 6 1392 2162 126 46 44 chr3 105806519 105806885 -53792898 + IAPLTR1_Mm LTR ERVK 1 367 0 6 1392 26445 128 25 26 chr3 105806885 105810523 -53789260 - L1_Mus3 LINE L1 -696 5942 2311 6 1392 1425 62 6 0 chr3 105810523 105810699 -53789084 + L1_Mus1 LINE L1 6391 6567 0 6 1392 26445 132 24 21 chr3 105810699 105812116 -53787667 - L1_Mus3 LINE L1 -3573 2310 881 6 1392 228 294 57 38 chr3 105812128 105812234 -53787549 + L1MC3 LINE L1 7615 7722 -63 6 1392 203 179 0 0 chr3 105812286 105812325 -53787458 + A-rich Low_complexity Low_complexity 1 39 0 6 1392 250 299 211 28 chr3 105812346 105812559 -53787224 + L1M5 LINE L1 3625 3876 -2270 6 1392 553 214 143 14 chr3 105812899 105813108 -53786675 + Charlie5 DNA MER1_type 2389 2624 0 6 1392 1340 213 138 27 chr3 105813363 105813696 -53786087 + ORR1D2 LTR MaLR 1 370 0 6 1392 392 309 79 30 chr3 105813698 105813965 -53785818 + L1M5 LINE L1 5543 5822 -351 6 1392 922 285 61 29 chr3 105813984 105814262 -53785521 + B4 SINE B4 1 287 -5 6 1392 2698 191 122 34 chr3 105814325 105814820 -53784963 + Lx9 LINE L1 6973 7476 -168 6 1392 680 59 10 0 chr3 105814820 105814922 -53784861 + (CA)n Simple_repeat Simple_repeat 2 104 0 6 1392 2698 191 122 34 chr3 105814922 105815043 -53784740 + Lx9 LINE L1 7477 7643 -1 6 1392 632 279 59 165 chr3 105815057 105815379 -53784404 + B4A SINE B4 1 288 -4 6 1392 1088 103 6 0 chr3 105816055 105816220 -53783563 + (TTCC)n Simple_repeat Simple_repeat 2 167 0 6 1392 657 214 26 0 chr3 105816229 105816346 -53783437 - B1_Mus2 SINE Alu -26 121 2 6 1392 204 305 90 33 chr3 105816842 105816964 -53782819 + MIRb SINE MIR 25 153 -115 6 1392 414 295 11 0 chr3 105818371 105818466 -53781317 + PB1 SINE Alu 14 109 -18 6 1392 1105 226 18 4 chr3 105818484 105818711 -53781072 + Lx5 LINE L1 6813 7042 -8 6 1392 405 0 0 0 chr3 105819723 105819768 -53780015 + (TC)n Simple_repeat Simple_repeat 1 45 0 6 1392 447 52 0 0 chr3 105819768 105819825 -53779958 + (CA)n Simple_repeat Simple_repeat 1 58 0 6 1392 282 56 0 0 chr3 105820437 105820473 -53779310 + (A)n Simple_repeat Simple_repeat 1 36 0 6 1392 307 325 0 0 chr3 105821397 105821477 -53778306 - ID4_ SINE ID -2 81 2 6 1392 325 324 61 26 chr3 105821490 105821604 -53778179 - PB1D7 SINE Alu -1 119 2 6 1392 238 261 123 0 chr3 105821655 105821720 -53778063 - ID4 SINE ID -9 74 2 6 1392 3740 283 87 14 chr3 105823863 105825139 -53774644 + Lx8 LINE L1 6103 7471 -2 6 1392 250 366 109 35 chr3 105826042 105826271 -53773512 + L2c LINE L2 3109 3354 -33 6 1392 777 291 118 24 chr3 105826419 105826750 -53773033 + Lx8 LINE L1 7111 7472 -1 6 1392 537 282 111 12 chr3 105829241 105829485 -53770298 + L1M2 LINE L1 4927 5194 -946 6 1392 3198 131 20 2 chr3 105829616 105830112 -53769671 - L1_Mur2 LINE L1 -331 5546 5042 6 1392 2153 124 3 0 chr3 105830113 105830420 -53769363 + Lx4B LINE L1 6171 6478 -580 6 1392 1733 47 0 36 chr3 105830420 105830708 -53769075 - L1Md_F3 LINE L1 0 6584 6346 6 1392 3374 150 62 12 chr3 105830708 105831166 -53768617 + Lx4B LINE L1 6465 6933 -125 6 1392 438 20 0 0 chr3 105831166 105831217 -53768566 + (TG)n Simple_repeat Simple_repeat 1 51 0 6 1392 3374 150 62 12 chr3 105831217 105831324 -53768459 + Lx4B LINE L1 6934 7056 -2 6 1392 247 295 54 0 chr3 105831389 105831501 -53768282 + L1MA8 LINE L1 6148 6265 -26 6 1392 1270 35 0 0 chr3 105832806 105832949 -53766834 - B1_Mm SINE Alu -3 144 2 6 1392 743 87 0 0 chr3 105832949 105833041 -53766742 - 4.5SRNA scRNA scRNA -2 92 1 6 1392 279 307 45 0 chr3 105833132 105833220 -53766563 - PB1D9 SINE Alu -20 100 9 6 1392 1590 131 65 4 chr3 105833637 105833913 -53765870 + Lx3A LINE L1 6682 6974 -7 6 1392 351 77 5 3 chr3 105834062 105834111 -53765672 - ORR1B1 LTR MaLR -8 386 322 6 1392 4674 36 2 5 chr3 105834111 105834672 -53765111 - L1Md_T LINE L1 -1 6581 6023 6 1392 7284 43 7 0 chr3 105834673 105835563 -53764220 + L1Md_F2 LINE L1 5687 6582 0 6 1392 252 191 56 42 chr3 105835563 105835582 -53764201 - ORR1B1 LTR MaLR -53 321 303 6 1392 25 58 0 42 chr3 105836067 105836139 -53763644 + AT_rich Low_complexity Low_complexity 1 69 0 6 1392 1049 54 0 81 chr3 105836255 105836416 -53763367 - L1_Mus2 LINE L1 0 6567 6420 6 1392 3871 39 0 0 chr3 105836414 105836873 -53762910 + L1Md_T LINE L1 6124 6582 0 6 1392 284 77 0 0 chr3 105836913 105836952 -53762831 - L1_Mus2 LINE L1 -134 6433 6395 6 1392 1963 41 0 0 chr3 105836950 105837195 -53762588 - L1_Mus2 LINE L1 -341 6225 5981 6 1392 858 89 129 0 chr3 105837320 105837444 -53762339 - B1_Mus1 SINE Alu -8 140 1 6 1392 186 103 0 0 chr3 105837976 105838005 -53761778 + (A)n Simple_repeat Simple_repeat 1 29 0 6 1392 25090 109 36 55 chr3 105838050 105842980 -53756803 - L1_Mus2 LINE L1 0 6566 1761 6 1392 4086 132 93 30 chr3 105842980 105843740 -53756043 - RLTR13C2 LTR ERVK 0 808 1 6 1392 25090 139 37 39 chr3 105843740 105844948 -53754835 - L1_Mus2 LINE L1 -4123 1760 511 6 1392 949 188 5 0 chr3 105847106 105847303 -53752480 - Lx9 LINE L1 -621 7023 6826 6 1392 1645 191 67 28 chr3 105847300 105847687 -53752096 + Lx9 LINE L1 7012 7413 -231 6 1392 1193 73 0 6 chr3 105847728 105847894 -53751889 + (TTTC)n Simple_repeat Simple_repeat 3 167 0 6 1392 4036 174 20 5 chr3 105847897 105848631 -53751152 - Lx4B LINE L1 -16 7042 6298 6 1392 2280 68 35 0 chr3 105848653 105848979 -53750804 - L1_Mus1 LINE L1 -666 5901 5588 6 1392 35477 67 11 9 chr3 105848986 105855283 -53744500 - L1Md_F3 LINE L1 -14 6573 313 6 1392 8395 120 9 7 chr3 105855269 105856636 -53743147 - L1_Mm LINE L1 -295 5588 4220 6 1392 4232 125 78 16 chr3 105856636 105857426 -53742357 - L1_Mur2 LINE L1 -516 5361 4523 6 1392 4619 152 19 34 chr3 105857426 105858228 -53741555 + Lx4A LINE L1 6269 7058 0 6 1392 2591 285 63 33 chr3 105858417 105859117 -53740666 + L1_Mur3 LINE L1 11 658 -7054 6 1392 6567 40 4 18 chr3 105859117 105859914 -53739869 - L1Md_F2 LINE L1 -3 6579 5794 6 1392 1608 36 0 20 chr3 105859914 105860111 -53739672 - B2_Mm1t SINE B2 0 193 1 6 1392 6567 40 4 18 chr3 105860111 105860143 -53739640 - L1Md_F2 LINE L1 -789 5793 5762 6 1392 2591 255 88 39 chr3 105860143 105860769 -53739014 + L1_Mur3 LINE L1 574 1205 -6507 6 1392 30 45 0 0 chr3 105860818 105860862 -53738921 + AT_rich Low_complexity Low_complexity 1 44 0 6 1392 12467 123 13 7 chr3 105860869 105863577 -53736206 + L1VL4 LINE L1 171 2893 -666 6 1392 2160 80 7 0 chr3 105863577 105863865 -53735918 + RMER17B LTR ERVK 1 290 -668 6 1392 3533 164 7 48 chr3 105863849 105864577 -53735206 + RLTR21 LTR ERVK 466 1163 -409 6 1392 333 0 0 0 chr3 105864587 105864624 -53735159 + (CA)n Simple_repeat Simple_repeat 2 38 0 6 1392 584 216 81 69 chr3 105864625 105864799 -53734984 + RLTR21 LTR ERVK 1397 1572 0 6 1392 299 138 58 58 chr3 105865416 105865485 -53734298 + L1VL1 LINE L1 279 347 -6075 6 1392 297 299 16 8 chr3 105865603 105865731 -53734052 + L1_Mus1 LINE L1 675 803 -5813 6 1392 2157 157 10 154 chr3 105865739 105866129 -53733654 + L1_Mus1 LINE L1 725 1083 -5533 6 1392 1102 89 7 0 chr3 105866129 105866275 -53733508 - B1_Mus2 SINE Alu 0 147 1 6 1392 21936 107 131 6 chr3 105866275 105871136 -53728647 + L1_Mus1 LINE L1 1083 6567 0 6 1392 25 31 0 0 chr3 105871153 105871185 -53728598 + AT_rich Low_complexity Low_complexity 1 32 0 6 1392 241 292 155 10 chr3 105871193 105871290 -53728493 - ID_B1 SINE B4 -11 213 103 6 1392 224 254 114 43 chr3 105871235 105871305 -53728478 - B1F2 SINE Alu -66 83 9 6 1392 271 250 47 12 chr3 105871381 105871466 -53728317 + MER58B DNA MER1_type 254 341 0 6 1392 227 235 93 12 chr3 105871662 105871748 -53728035 - MER45A DNA Tip100 -11 167 75 6 1392 342 312 33 50 chr3 105871888 105872070 -53727713 + L2a LINE L2 3244 3422 -4 6 1392 29 47 0 0 chr3 105872111 105872154 -53727629 + AT_rich Low_complexity Low_complexity 1 43 0 6 1392 277 316 0 0 chr3 105872632 105872727 -53727056 - Lx8 LINE L1 -346 7127 7033 6 1392 788 104 48 8 chr3 105872814 105872940 -53726843 + B2_Mm1t SINE B2 49 179 -14 6 1392 301 147 0 42 chr3 105873025 105873092 -53726691 + B2_Mm2 SINE B2 47 108 -108 6 1392 1589 77 18 0 chr3 105873138 105873438 -53726345 + L1_Mus2 LINE L1 6341 6566 0 6 1392 241 326 33 59 chr3 105874340 105874493 -53725290 - MIR SINE MIR -10 252 104 6 1392 645 14 0 0 chr3 105874780 105874854 -53724929 + (TTTC)n Simple_repeat Simple_repeat 3 76 0 6 1392 365 355 32 24 chr3 105874854 105874978 -53724805 - ID_B1 SINE B4 -12 212 88 6 1392 9356 54 7 2 chr3 105875096 105876325 -53723458 + L1Md_F2 LINE L1 4352 5586 -297 6 1392 8246 39 2 0 chr3 105876325 105877307 -53722476 + L1Md_F2 LINE L1 5587 6570 -12 6 1392 718 243 0 7 chr3 105878139 105878288 -53721495 - B1_Mus1 SINE Alu 0 148 1 6 1392 1239 250 90 9 chr3 105879004 105879409 -53720374 + Lx2B LINE L1 6547 6964 -36 6 1392 264 30 0 0 chr3 105879413 105879446 -53720337 + (TAAA)n Simple_repeat Simple_repeat 4 36 0 6 1392 12814 154 32 12 chr3 105879446 105880382 -53719401 + Lx2B LINE L1 1113 2061 -3816 6 1392 840 46 0 0 chr3 105880382 105880491 -53719292 + (CA)n Simple_repeat Simple_repeat 1 109 0 6 1392 12814 158 32 16 chr3 105880491 105882193 -53717590 + Lx2B LINE L1 2062 3800 -2077 6 1392 3189 189 17 50 chr3 105882193 105882242 -53717541 + Lx2B LINE L1 5210 5248 -638 6 1392 658 98 16 16 chr3 105882242 105882367 -53717416 + L1_Mus3 LINE L1 6508 6632 -6 6 1392 6404 182 25 43 chr3 105882367 105884144 -53715639 + Lx2B LINE L1 5249 6983 -17 6 1392 461 137 0 0 chr3 105884146 105884219 -53715564 + L1Md_F2 LINE L1 265 337 -6282 6 1392 3838 95 2 5 chr3 105884212 105884794 -53714989 + L1Md_F2 LINE L1 563 1142 -5380 6 1392 13374 65 4 0 chr3 105887331 105889135 -53710648 + L1Md_F2 LINE L1 3778 5589 -297 6 1392 8346 38 2 0 chr3 105889135 105890129 -53709654 + L1Md_F2 LINE L1 5590 6585 0 6 1392 1476 143 17 12 chr3 105890621 105890861 -53708922 + ORR1A3 LTR MaLR 1 241 -85 6 1392 1442 145 11 14 chr3 105891437 105891717 -53708066 + L1_Mur2 LINE L1 3815 4093 -1784 6 1392 4246 246 54 8 chr3 105891714 105892801 -53706982 + Lx5 LINE L1 5911 7047 -3 6 1392 3943 177 28 8 chr3 105892812 105893482 -53706301 + Lx5 LINE L1 6364 7047 -3 6 1392 23 0 0 0 chr3 105893632 105893655 -53706128 + AT_rich Low_complexity Low_complexity 1 23 0 7 1392 5230 2 0 0 chr3 105894993 105895568 -53704215 + L1Md_A LINE L1 6008 6582 0 7 1392 243 368 132 0 chr3 105895736 105895850 -53703933 + B1F SINE Alu 6 134 -15 7 1392 29590 121 9 16 chr3 105896337 105902664 -53697119 + L1_Mus1 LINE L1 261 6567 0 7 1392 253 227 82 0 chr3 105902783 105902880 -53696903 + Lx9 LINE L1 7538 7642 -2 7 1392 181 57 28 28 chr3 105902891 105902927 -53696856 + (TAAA)n Simple_repeat Simple_repeat 4 39 0 7 1392 851 104 96 0 chr3 105903228 105903353 -53696430 + B1_Mus1 SINE Alu 3 139 -9 7 1392 225 333 112 69 chr3 105904027 105904304 -53695479 + LTR41 LTR ERVL 449 737 -31 7 1392 233 332 86 5 chr3 105904366 105904563 -53695220 - L1M5 LINE L1 -627 5817 5605 7 1392 315 0 0 0 chr3 105904856 105904891 -53694892 + (TA)n Simple_repeat Simple_repeat 1 35 0 7 1392 875 65 8 0 chr3 105905047 105905170 -53694613 - L1_Mus2 LINE L1 -14 6552 6429 7 1392 14277 131 42 68 chr3 105905212 105905557 -53694226 + L1_Mus2 LINE L1 3025 3439 -2444 7 1392 371 292 174 7 chr3 105905557 105905712 -53694071 - RMER12 LTR ERVK -132 1190 1010 7 1392 14277 131 42 68 chr3 105905712 105905859 -53693924 + L1_Mus2 LINE L1 3440 3618 -2265 7 21 3487 189 30 43 chr3 105905859 105906725 -53693058 - RLTR13A LTR ERVK 0 855 1 7 1393 14277 131 42 68 chr3 105906725 105906763 -53693020 + L1_Mus2 LINE L1 3619 3650 -2233 7 1393 243 0 0 0 chr3 105906763 105906790 -53692993 + (CAA)n Simple_repeat Simple_repeat 1 27 0 7 1393 14277 121 35 54 chr3 105906790 105909256 -53690527 + L1_Mus2 LINE L1 3651 6104 -462 7 1393 301 250 94 59 chr3 105909264 105909434 -53690349 - RLTR22_Mus LTR ERVK -1030 778 603 7 1393 4064 123 46 3 chr3 105909505 105910135 -53689648 - Lx3A LINE L1 -2 6979 6323 7 1393 5093 99 31 3 chr3 105910135 105911228 -53688555 + Lx3A LINE L1 5133 6345 -636 7 1393 1054 199 132 7 chr3 105911314 105911492 -53688291 + Lx9 LINE L1 7301 7510 -134 7 1393 369 0 0 0 chr3 105911492 105911533 -53688250 + (CA)n Simple_repeat Simple_repeat 1 41 0 7 1393 1054 199 132 7 chr3 105911533 105911658 -53688125 + Lx9 LINE L1 7511 7641 -3 7 1393 587 296 48 37 chr3 105911648 105912024 -53687759 + Lx8 LINE L1 5356 5735 -112 7 1393 438 20 0 0 chr3 105912314 105912365 -53687418 + (TG)n Simple_repeat Simple_repeat 2 52 0 7 1393 520 236 8 8 chr3 105912438 105912566 -53687217 - RMER1C Other Other -11 1331 1204 7 1393 581 164 9 0 chr3 105912566 105912682 -53687101 + GA-rich Low_complexity Low_complexity 1 117 0 7 1393 2436 240 96 54 chr3 105912687 105913469 -53686314 - RMER1C Other Other -151 1191 206 7 1393 257 282 64 0 chr3 105913439 105913517 -53686266 - RMER1C Other Other -544 798 716 7 1393 430 172 0 20 chr3 105913802 105913903 -53685880 + (CATA)n Simple_repeat Simple_repeat 4 102 0 7 1393 240 111 0 0 chr3 105914310 105914346 -53685437 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 7 1393 1090 58 22 0 chr3 105914346 105914485 -53685298 - B1_Mm SINE Alu -1 146 5 7 1393 1672 210 40 8 chr3 105914655 105915035 -53684748 - Lx2B LINE L1 -13 6987 6596 7 1393 1710 282 100 7 chr3 105915070 105915660 -53684123 + Lx8 LINE L1 6189 6833 -640 7 1393 381 280 30 0 chr3 105916988 105917088 -53682695 + PB1D7 SINE Alu 12 114 -6 7 1393 1350 26 22 4 chr3 105918410 105919100 -53680683 + (TCTA)n Simple_repeat Simple_repeat 1 702 0 7 1393 546 335 73 38 chr3 105919134 105919584 -53680199 - Lx8 LINE L1 -25 7448 6983 7 1393 315 286 98 4 chr3 105919708 105919933 -53679850 - L1MA8 LINE L1 -51 6240 5995 7 1393 382 62 0 0 chr3 105919992 105920056 -53679727 - L1_Mus4 LINE L1 -10 6626 6563 7 1393 242 65 0 0 chr3 105920056 105920087 -53679696 - L1_Mur1 LINE L1 -326 5560 5530 7 1393 3264 159 78 1 chr3 105920081 105920736 -53679047 - L1_Mur3 LINE L1 -581 5296 4592 7 1393 411 91 61 0 chr3 105920726 105920792 -53678991 + L1_Mm LINE L1 4078 4147 -1736 7 1393 4039 82 22 2 chr3 105920783 105921406 -53678377 - MusHAL1 LINE L1 -1421 1291 656 7 1393 3459 40 5 0 chr3 105921405 105921962 -53677821 - L1Md_F2 LINE L1 -566 6016 5458 7 1393 4288 81 0 9 chr3 105921962 105922538 -53677245 + L1Md_F2 LINE L1 5998 6568 -14 7 1393 1303 87 53 0 chr3 105922555 105922762 -53677021 - MusHAL1 LINE L1 -2046 666 449 7 1393 1059 233 7 125 chr3 105922757 105923222 -53676561 - L1_Mur3 LINE L1 -6444 1284 875 7 1393 210 37 0 0 chr3 105923734 105923761 -53676022 + (A)n Simple_repeat Simple_repeat 1 27 0 7 1393 947 281 16 60 chr3 105923761 105924075 -53675708 + Lx7 LINE L1 6262 6561 -1135 7 1393 245 362 42 24 chr3 105925620 105925787 -53673996 - MIRc SINE MIR -19 249 80 7 1393 279 347 36 89 chr3 105925853 105926100 -53673683 - L2c LINE L2 -21 3366 3133 7 1393 6494 144 109 24 chr3 105926105 105928448 -53671335 - Lx3C LINE L1 -26 6950 4217 7 1393 4917 194 92 31 chr3 105928454 105930012 -53669771 - L1_Mur2 LINE L1 -3334 2543 900 7 1393 1781 191 38 6 chr3 105930260 105930603 -53669180 - ORR1B1 LTR MaLR -40 354 1 7 1393 456 19 0 0 chr3 105931989 105932042 -53667741 + (CA)n Simple_repeat Simple_repeat 1 53 0 7 1393 7397 92 7 0 chr3 105932091 105933309 -53666474 - L1_Mus4 LINE L1 -7 6629 5403 7 1393 321 118 0 0 chr3 105933908 105933959 -53665824 + (TATG)n Simple_repeat Simple_repeat 4 54 0 7 1393 441 0 0 0 chr3 105934213 105934262 -53665521 + (TC)n Simple_repeat Simple_repeat 2 50 0 7 1393 266 0 29 0 chr3 105934262 105934295 -53665488 + (TG)n Simple_repeat Simple_repeat 2 36 0 7 1393 786 22 0 0 chr3 105935111 105935203 -53664580 + (GA)n Simple_repeat Simple_repeat 1 92 0 7 1393 1226 282 141 12 chr3 105935521 105936082 -53663701 + Lx8 LINE L1 6835 7467 -6 7 1393 526 272 65 37 chr3 105936399 105936695 -53663088 - L1MB3 LINE L1 -230 5949 5651 7 1393 411 276 142 12 chr3 105936720 105936889 -53662894 - L1MB3 LINE L1 -691 5473 5283 7 1393 1132 89 0 0 chr3 105936953 105937099 -53662684 - B1_Mus2 SINE Alu 0 147 2 7 1393 6158 69 22 5 chr3 105937133 105937993 -53661790 - L1Md_F2 LINE L1 -3 6579 5715 7 1393 5937 81 0 2 chr3 105938173 105938961 -53660822 - L1_Mus1 LINE L1 0 6567 5782 7 1393 35309 46 6 3 chr3 105938961 105944400 -53655383 - L1Md_T LINE L1 -4 6578 1129 7 1393 5204 102 12 2 chr3 105944367 105945176 -53654607 - L1Md_T LINE L1 -5521 1203 387 7 1393 5746 141 27 17 chr3 105945174 105946240 -53653543 - L1Md_F LINE L1 -4614 1269 193 7 1393 3938 137 39 2 chr3 105946239 105947388 -53652395 - L1Md_F LINE L1 -4292 1591 392 7 1393 2243 118 25 3 chr3 105947866 105948232 -53651551 - L1_Mur1 LINE L1 -291 5595 5222 7 1393 3014 198 66 11 chr3 105948227 105948923 -53650860 + Lx3B LINE L1 6239 6972 -1 7 1393 30 45 0 0 chr3 105949164 105949208 -53650575 + AT_rich Low_complexity Low_complexity 1 44 0 7 1393 22 0 0 0 chr3 105949254 105949276 -53650507 + AT_rich Low_complexity Low_complexity 1 22 0 7 1393 190 302 47 16 chr3 105950587 105950651 -53649132 + L4 LINE RTE 443 508 -1521 7 1393 656 337 88 49 chr3 105953590 105954184 -53645599 + Lx8 LINE L1 6231 6862 -611 7 1393 1064 108 0 0 chr3 105954184 105954332 -53645451 - B1_Mus1 SINE Alu 0 148 1 7 1393 656 337 88 49 chr3 105954332 105954530 -53645253 + Lx8 LINE L1 6863 7054 -419 7 1393 7125 192 13 9 chr3 105954553 105956162 -53643621 - Lx2 LINE L1 -491 5386 3771 7 1393 7084 186 23 2 chr3 105956165 105957706 -53642077 + Lx2 LINE L1 5415 6995 -2 7 1393 266 338 69 64 chr3 105957714 105957965 -53641818 + Lx8 LINE L1 7078 7332 -141 7 1393 1997 108 16 6 chr3 105957965 105958281 -53641502 + L1_Mus3 LINE L1 6317 6635 -3 7 1393 266 338 69 64 chr3 105958281 105958421 -53641362 + Lx8 LINE L1 7333 7471 -2 7 1393 1066 109 0 0 chr3 105959627 105959774 -53640009 + B1_Mus2 SINE Alu 1 147 0 7 1393 534 337 45 55 chr3 105959999 105960310 -53639473 + RLTR18 LTR ERVK 6 313 -303 7 1393 476 361 29 30 chr3 105960384 105960675 -53639108 + RLTR18B LTR ERVK 217 608 -8 7 1393 1963 206 29 23 chr3 105960808 105961310 -53638473 + RMER12 LTR ERVK 352 1051 -271 7 1393 2048 188 7 0 chr3 105961351 105961776 -53638007 + L1_Mm LINE L1 4670 5097 -786 7 1393 540 256 85 54 chr3 105962046 105962269 -53637514 + RMER12 LTR ERVK 1039 1268 -54 7 1393 744 186 49 43 chr3 105962272 105962457 -53637326 + RMER12 LTR ERVK 1123 1308 -14 7 1393 333 254 20 25 chr3 105962965 105963071 -53636712 + MIR SINE MIR 59 169 -107 7 1393 1146 88 0 0 chr3 105964734 105964881 -53634902 - B1_Mus2 SINE Alu 0 147 1 7 1393 1062 116 0 0 chr3 105966242 105966389 -53633394 + B1_Mus1 SINE Alu 1 147 -1 7 1393 190 108 39 51 chr3 105966403 105966430 -53633353 + A-rich Low_complexity Low_complexity 2 31 0 7 1393 524 15 0 15 chr3 105966430 105966496 -53633287 + (CAAAC)n Simple_repeat Simple_repeat 5 69 0 7 1393 190 108 39 51 chr3 105966496 105966546 -53633237 + A-rich Low_complexity Low_complexity 32 77 0 7 1393 239 323 137 21 chr3 105967105 105967200 -53632583 + RLTR1D LTR ERV1 182 287 -318 7 1393 432 0 0 0 chr3 105968203 105968251 -53631532 + (TG)n Simple_repeat Simple_repeat 2 49 0 7 1393 824 244 13 30 chr3 105968553 105968850 -53630933 + RLTR15 LTR ERVK 1 359 0 7 1393 598 324 96 25 chr3 105971843 105972125 -53627658 + L1M2 LINE L1 2800 3088 -3055 7 1393 189 0 0 0 chr3 105972125 105972146 -53627637 + (CAAA)n Simple_repeat Simple_repeat 4 24 0 7 1393 598 324 96 25 chr3 105972146 105972259 -53627524 + L1M2 LINE L1 3089 3222 -2921 7 1393 237 258 205 0 chr3 105972329 105972480 -53627303 + L1M2 LINE L1 3341 3522 -2621 7 1393 198 91 0 0 chr3 105973433 105973466 -53626317 + (T)n Simple_repeat Simple_repeat 1 33 0 7 1393 4053 235 22 10 chr3 105973651 105974546 -53625237 + RMER13B LTR ERVK 3 908 0 7 1393 33196 71 9 5 chr3 105974633 105980764 -53619019 - L1Md_F2 LINE L1 0 6582 440 7 1393 2717 80 8 8 chr3 105982199 105982575 -53617208 + L1Md_F2 LINE L1 6206 6581 -1 7 1393 952 137 11 47 chr3 105983366 105983557 -53616226 - B2_Mm2 SINE B2 -8 187 4 7 1393 306 0 0 0 chr3 105984306 105984340 -53615443 + (CAT)n Simple_repeat Simple_repeat 3 36 0 7 1393 6764 182 44 3 chr3 105984347 105985721 -53614062 - Lx4A LINE L1 -4 7054 5625 7 1393 830 172 18 94 chr3 105985715 105985939 -53613844 - L1VL4 LINE L1 -5733 569 363 7 1393 518 283 98 14 chr3 105985955 105986242 -53613541 - Lx9 LINE L1 -153 7491 7181 7 1393 279 0 0 0 chr3 105986243 105986274 -53613509 + (CA)n Simple_repeat Simple_repeat 2 32 0 7 1393 4759 81 13 0 chr3 105986325 105986996 -53612787 - L1_Mus1 LINE L1 -215 6352 5673 7 1393 3078 42 0 0 chr3 105987001 105987355 -53612428 - IAPEY2_LTR LTR ERVK -3 354 1 7 1393 2696 117 17 37 chr3 105987355 105988013 -53611770 - IAPEY3-int LTR ERVK 0 7581 6984 7 1393 224 368 44 0 chr3 105988013 105988127 -53611656 - L3b LINE CR1 -29 453 335 7 1393 3332 70 7 0 chr3 105988142 105988587 -53611196 - IAPEY3-int LTR ERVK -4991 2689 2242 7 1393 8470 130 22 37 chr3 105988567 105990048 -53609735 - IAPEY3-int LTR ERVK -5698 1982 524 7 1393 730 154 49 37 chr3 105990047 105990209 -53609574 - IAPLTR4_I LTR ERVK -1290 180 17 7 1393 3074 42 0 0 chr3 105990209 105990563 -53609220 - IAPEY2_LTR LTR ERVK -3 354 1 7 1393 2183 125 0 3 chr3 105990564 105990910 -53608873 - L1_Mm LINE L1 -206 5677 5333 8 1393 7031 165 19 1 chr3 105990934 105992231 -53607552 - Lx3_Mus LINE L1 -8 7001 5683 8 1393 1470 171 4 0 chr3 105992281 105992550 -53607233 + Lx2 LINE L1 6374 6643 -354 8 1393 1031 196 14 9 chr3 105992550 105992772 -53607011 + Lx2 LINE L1 6775 6997 0 8 1393 27288 83 11 4 chr3 105993029 105997773 -53602010 - L1Md_F2 LINE L1 0 6582 1802 8 1393 5949 94 0 5 chr3 105997770 105998785 -53600998 - L1Md_F2 LINE L1 -4470 1413 399 8 1393 2121 60 0 0 chr3 105998785 105999069 -53600714 - L1_Mm LINE L1 -1208 4675 4392 8 1393 1906 136 0 17 chr3 105999504 106000000 -53599783 - MMVL30-int LTR ERV1 -1705 3358 2453 8 1393 5044 96 27 32 chr3 106000005 106000751 -53599032 - MuRRS4-int LTR ERV1 -2365 2698 1957 1 1393 4192 202 14 21 chr3 106000753 106001618 -53598165 + MuRRS4-int LTR ERV1 3405 4263 -800 2 1393 1047 64 43 0 chr3 106001638 106001779 -53598004 - B1_Mm SINE Alu 0 147 1 3 1393 738 215 139 14 chr3 106001791 106001999 -53597784 + MuRRS4-int LTR ERV1 4788 5021 -42 2 1393 2767 100 102 24 chr3 106002000 106002450 -53597333 + LTRIS2 LTR ERV1 1 485 -79 4 1393 2248 129 13 34 chr3 106002827 106003211 -53596572 - L1_Mur1 LINE L1 -287 5599 5224 5 1393 2232 204 21 5 chr3 106003214 106003648 -53596135 + Lx3B LINE L1 6250 6690 -283 6 1393 1466 193 3 3 chr3 106007741 106008027 -53591756 + Lx LINE L1 6362 6647 -7 7 1393 310 332 69 60 chr3 106008042 106008260 -53591523 + Lx8 LINE L1 7085 7304 -169 8 1393 1986 108 10 0 chr3 106008313 106008601 -53591182 + L1_Mus3 LINE L1 6342 6632 -6 9 1393 456 357 34 61 chr3 106010138 106010466 -53589317 + RLTR18 LTR ERVK 5 323 -293 1 1393 250 349 29 52 chr3 106010546 106010682 -53589101 + RLTR18 LTR ERVK 350 482 -134 1 1393 1753 215 30 23 chr3 106010951 106011384 -53588399 + RMER12 LTR ERVK 352 787 -535 1 1393 269 290 10 106 chr3 106011351 106011455 -53588328 + RMER12 LTR ERVK 958 1051 -271 1 1393 2058 192 5 7 chr3 106011497 106011926 -53587857 + L1_Mm LINE L1 4670 5097 -786 1 1393 21 36 0 0 chr3 106012123 106012151 -53587632 + AT_rich Low_complexity Low_complexity 1 28 0 1 1393 656 264 70 16 chr3 106012151 106012383 -53587400 + RMER12 LTR ERVK 1039 1267 -55 1 1393 725 166 47 47 chr3 106012386 106012557 -53587226 + RMER12 LTR ERVK 1123 1293 -29 1 1393 184 296 40 66 chr3 106012817 106012893 -53586890 + L2b LINE L2 3107 3180 -195 1 1393 323 295 10 37 chr3 106013078 106013191 -53586592 + MIR SINE MIR 66 171 -91 1 1393 953 40 0 0 chr3 106016289 106016415 -53583368 - L1Md_T LINE L1 0 6582 6457 1 1393 3755 30 0 0 chr3 106016415 106016853 -53582930 + L1Md_T LINE L1 5771 6208 -374 1 1393 254 256 201 72 chr3 106017290 106017429 -53582354 + RLTR1D LTR ERV1 182 338 -267 1 1393 594 0 0 0 chr3 106018520 106018586 -53581197 + (TC)n Simple_repeat Simple_repeat 2 67 0 2 1393 189 0 0 0 chr3 106018586 106018606 -53581177 + (TG)n Simple_repeat Simple_repeat 2 22 0 2 1393 2549 138 7 2 chr3 106019834 106020280 -53579503 - L1_Mus3 LINE L1 0 6638 6224 2 1393 540 229 7 14 chr3 106020644 106020786 -53578997 + RLTR15 LTR ERVK 219 359 0 2 1393 378 0 0 0 chr3 106025000 106025042 -53574741 + (TG)n Simple_repeat Simple_repeat 2 43 0 2 1393 398 337 75 56 chr3 106025519 106025877 -53573906 + L1M2 LINE L1 2800 3164 -2979 2 1393 186 43 0 0 chr3 106025886 106025909 -53573874 + (GA)n Simple_repeat Simple_repeat 2 24 0 2 1393 25 0 0 0 chr3 106026386 106026411 -53573372 + AT_rich Low_complexity Low_complexity 1 25 0 2 1393 261 105 0 0 chr3 106026459 106026497 -53573286 + B2_Mm2 SINE B2 1 38 -157 2 1393 369 234 98 110 chr3 106026746 106026919 -53572864 + RLTR13D3 LTR ERVK 944 1114 0 2 1393 264 212 15 0 chr3 106026982 106027048 -53572735 + L1M2 LINE L1 3469 3535 -2608 2 1393 180 0 0 0 chr3 106028002 106028022 -53571761 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 3 1393 3639 230 35 12 chr3 106028168 106029056 -53570727 + RMER13B LTR ERVK 1 908 0 3 1393 1433 183 61 20 chr3 106030997 106031342 -53568441 + RLTR15 LTR ERVK 1 359 0 3 1393 538 307 39 34 chr3 106032480 106032861 -53566922 + L1_Rod LINE L1 1515 1897 -3950 3 1393 1203 142 24 0 chr3 106032873 106033085 -53566698 + Lx3C LINE L1 6015 6231 -745 3 1393 5210 90 4 0 chr3 106033344 106034056 -53565727 + L1_Mm LINE L1 4215 4929 -954 3 1393 2608 102 8 25 chr3 106034056 106034457 -53565326 - L1_Mus2 LINE L1 -19 6547 6154 3 1393 1686 65 5 0 chr3 106034457 106034673 -53565110 + L1_Mus2 LINE L1 5957 6173 -393 3 1393 740 306 30 15 chr3 106034838 106035100 -53564683 - Lx7 LINE L1 -975 6721 6456 3 1393 1141 311 60 9 chr3 106035087 106035522 -53564261 + Lx7 LINE L1 6724 7180 -516 3 1393 28 71 0 0 chr3 106035902 106035958 -53563825 + AT_rich Low_complexity Low_complexity 1 56 0 3 174 420 298 139 5 chr3 106037144 106037353 -53562430 - Lx7 LINE L1 -669 7027 6791 3 1394 27 0 0 0 chr3 106037372 106037399 -53562384 + AT_rich Low_complexity Low_complexity 1 27 0 4 1394 1103 141 20 25 chr3 106037421 106037617 -53562166 - B2_Mm2 SINE B2 0 195 1 4 1394 18821 113 14 3 chr3 106037630 106041324 -53558459 - L1_Mus1 LINE L1 0 6567 2845 4 1394 1118 103 11 0 chr3 106041324 106041499 -53558284 - Lx3_Mus LINE L1 -709 6300 6124 4 1394 2663 108 108 29 chr3 106041499 106041955 -53557828 + Lx3_Mus LINE L1 6518 7009 0 4 1394 544 158 0 0 chr3 106041964 106042059 -53557724 + L1_Mur3 LINE L1 4324 4418 -1462 4 1394 6093 157 22 9 chr3 106042076 106043245 -53556538 - Lx LINE L1 -18 6636 5445 4 1394 396 0 0 0 chr3 106043245 106043289 -53556494 + (TTTA)n Simple_repeat Simple_repeat 4 47 0 4 1394 4740 171 14 14 chr3 106043289 106043420 -53556363 - Lx LINE L1 -439 5444 5316 4 1394 5045 5 0 0 chr3 106043420 106043984 -53555799 + L1Md_A LINE L1 6019 6582 0 4 1394 4740 171 14 14 chr3 106043984 106044315 -53555468 - Lx LINE L1 -568 5315 4989 4 1394 32 26 0 0 chr3 106044315 106044354 -53555429 + AT_rich Low_complexity Low_complexity 1 39 0 4 1394 32237 113 16 9 chr3 106044361 106050693 -53549090 - L1Md_F2 LINE L1 0 6582 214 5 1394 2952 133 44 18 chr3 106050694 106051245 -53548538 + ETnERV2-int LTR ERVK 1531 2095 -5311 5 1394 483 291 5 69 chr3 106051241 106051429 -53548354 + ETnERV2-int LTR ERVK 2433 2608 -4798 5 1394 2079 140 35 25 chr3 106051429 106051885 -53547898 + ETnERV2-int LTR ERVK 3055 3448 -3958 5 1394 4588 160 16 39 chr3 106051920 106053639 -53546144 + ETnERV2-int LTR ERVK 2356 4085 -3321 5 1394 9576 108 19 38 chr3 106053648 106055088 -53544695 + ETnERV2-int LTR ERVK 5757 7168 -238 5 1394 737 227 213 10 chr3 106055090 106055441 -53544342 + RLTR13D6 LTR ERVK 118 537 -365 5 1394 282 125 164 45 chr3 106055441 106055461 -53544322 + ETnERV2-int LTR ERVK 7329 7348 -58 5 1394 342 0 0 0 chr3 106055461 106055499 -53544284 + (TAAA)n Simple_repeat Simple_repeat 4 41 0 5 1394 282 125 164 45 chr3 106055499 106055545 -53544238 + ETnERV2-int LTR ERVK 7349 7402 -4 5 1394 877 177 30 148 chr3 106055547 106055912 -53543871 + RLTRETN_Mm LTR ERVK 1 322 0 5 1394 4026 162 98 70 chr3 106055912 106056892 -53542891 - RLTR45-int LTR ERVK -1562 5682 4676 5 1394 3108 59 5 2 chr3 106056884 106057290 -53542493 - ETnERV2-int LTR ERVK -1644 5762 5356 5 1394 9095 132 32 2 chr3 106057288 106058700 -53541083 - ETnERV2-int LTR ERVK -2727 4679 3226 5 1394 182 246 140 0 chr3 106058711 106058768 -53541015 + MER5A DNA MER1_type 9 73 -116 5 1394 503 136 38 19 chr3 106058768 106058873 -53540910 - ETnERV2-int LTR ERVK -4253 3153 3047 5 1394 686 227 6 38 chr3 106058865 106059025 -53540758 - ETnERV2-int LTR ERVK -4798 2608 2454 5 1394 687 167 25 0 chr3 106059038 106059158 -53540625 - RMER16-int LTR ERVK -5077 1060 938 5 1394 2128 164 152 38 chr3 106059163 106059670 -53540113 - RMER16-int LTR ERVK -4587 819 255 5 1394 2373 150 0 2 chr3 106060681 106061076 -53538707 - L1_Mm LINE L1 -1220 4663 4270 5 1394 1131 82 7 0 chr3 106061191 106061337 -53538446 - B1_Mus1 SINE Alu 0 148 2 6 1394 3525 115 8 137 chr3 106061339 106062092 -53537691 + L1_Mur1 LINE L1 4454 5109 -777 6 1394 2626 212 86 4 chr3 106062092 106062789 -53536994 + MYSERV6-int LTR ERVK 8152 8905 -54 6 1394 717 270 27 66 chr3 106062830 106063163 -53536620 + RLTR15 LTR ERVK 4 323 -36 6 1394 2776 165 214 4 chr3 106064016 106064576 -53535207 + RLTR33 LTR ERVK 1 678 0 6 1394 290 325 17 8 chr3 106064602 106064720 -53535063 - Lx7 LINE L1 -539 7157 7039 6 1394 232 365 14 0 chr3 106064723 106064797 -53534986 - Lx6 LINE L1 -454 7006 6932 6 1394 1458 136 63 0 chr3 106064801 106065087 -53534696 + L1_Mur2 LINE L1 3048 3351 -2526 6 1394 8040 130 13 1 chr3 106065086 106066379 -53533404 - L1_Mm LINE L1 -1119 4764 3456 6 1394 981 285 60 3 chr3 106066836 106067167 -53532616 + Lx9 LINE L1 7115 7464 -180 6 1394 360 0 0 0 chr3 106067170 106067210 -53532573 + (TA)n Simple_repeat Simple_repeat 2 41 0 7 1394 441 0 0 0 chr3 106067210 106067258 -53532525 + (TG)n Simple_repeat Simple_repeat 2 50 0 7 1394 295 395 58 32 chr3 106067669 106068012 -53531771 + MTD LTR MaLR 26 377 -42 7 1394 1338 254 14 41 chr3 106068584 106068953 -53530830 - RLTR15 LTR ERVK 0 359 1 7 1394 38462 6 0 1 chr3 106069167 106074910 -53524873 + L1Md_A LINE L1 1 5586 -297 7 1394 8975 5 0 0 chr3 106074910 106075906 -53523877 + L1Md_A LINE L1 5587 6582 0 7 1394 306 0 0 0 chr3 106077529 106077563 -53522220 + (CA)n Simple_repeat Simple_repeat 2 35 0 7 1394 66 14 0 0 chr3 106079732 106079805 -53519978 + AT_rich Low_complexity Low_complexity 1 73 0 7 1394 1572 60 0 0 chr3 106080177 106080377 -53519406 - L1Md_F2 LINE L1 -1 6566 6367 7 1394 5797 72 1 0 chr3 106081130 106082182 -53517601 - L1Md_F2 LINE L1 -417 6165 5113 7 1394 2898 102 2 14 chr3 106082183 106082619 -53517164 + L1Md_F2 LINE L1 6151 6581 -1 7 1394 302 336 26 17 chr3 106084099 106084214 -53515569 - MIRc SINE MIR -87 181 66 7 1394 631 222 86 23 chr3 106084725 106084900 -53514883 - RMER12 LTR ERVK -14 1308 1123 7 1394 506 253 159 15 chr3 106084904 106085105 -53514678 - RMER12 LTR ERVK -55 1267 1038 8 1394 1821 206 75 6 chr3 106085381 106085822 -53513961 - L1_Mur2 LINE L1 -785 5092 4653 8 1394 1971 208 28 25 chr3 106085824 106086323 -53513460 - RMER12 LTR ERVK -271 1051 352 8 1394 481 337 27 31 chr3 106086485 106086745 -53513038 - RLTR18B LTR ERVK -37 475 217 8 1394 429 376 35 45 chr3 106086819 106087131 -53512652 - RLTR18 LTR ERVK -303 313 5 8 1394 21 57 0 0 chr3 106087172 106087207 -53512576 + AT_rich Low_complexity Low_complexity 1 35 0 8 1394 24 0 0 0 chr3 106088047 106088071 -53511712 + AT_rich Low_complexity Low_complexity 1 24 0 8 1394 35202 48 1 5 chr3 106088078 106093555 -53506228 + L1Md_T LINE L1 38 5589 -297 8 1394 8365 35 0 0 chr3 106093555 106094551 -53505232 + L1Md_T LINE L1 5590 6585 0 8 1394 529 198 18 0 chr3 106094552 106094663 -53505120 - Lx7 LINE L1 -1789 5907 5795 8 1394 2006 103 32 6 chr3 106095290 106095602 -53504181 - L1_Mus3 LINE L1 -2 6636 6317 8 1394 444 327 50 32 chr3 106095627 106095845 -53503938 - Lx8 LINE L1 -168 7305 7084 8 1394 7647 182 18 1 chr3 106095858 106097409 -53502374 - Lx2 LINE L1 -1 6996 5415 9 1394 7691 188 23 9 chr3 106097404 106097488 -53502295 + L1_Mur2 LINE L1 3764 3848 -2029 9 1394 234 0 0 0 chr3 106097488 106097514 -53502269 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 9 1394 7691 188 23 9 chr3 106097514 106099029 -53500754 + L1_Mur2 LINE L1 3849 5385 -492 9 1394 517 345 58 48 chr3 106099111 106099504 -53500279 - Lx8 LINE L1 -477 6996 6600 8 1394 506 316 49 18 chr3 106099518 106099802 -53499981 - Lx8 LINE L1 -929 6544 6252 8 1394 193 298 0 0 chr3 106102796 106102843 -53496940 - L4 LINE RTE -1520 509 463 9 1394 14589 89 6 5 chr3 106103978 106106720 -53493063 - L1Md_F2 LINE L1 -12 6570 3824 9 1394 1811 59 0 0 chr3 106106720 106106942 -53492841 + L1Md_F2 LINE L1 5365 5586 -297 9 1394 7250 67 25 8 chr3 106106942 106107919 -53491864 + L1Md_F2 LINE L1 5587 6579 -3 9 1394 592 344 75 19 chr3 106108606 106109021 -53490762 + Lx8 LINE L1 6833 7270 -203 9 1394 1205 103 6 6 chr3 106109085 106109260 -53490523 + B2_Mm2 SINE B2 2 176 -19 9 1394 1695 48 0 0 chr3 106109558 106109767 -53490016 - L1Md_T LINE L1 -1 6581 6373 9 1394 385 351 43 8 chr3 106109785 106110038 -53489745 + L1M2 LINE L1 4770 5031 -1112 9 1394 412 341 123 24 chr3 106110136 106110469 -53489314 + Lx8 LINE L1 6923 7288 -185 1 1394 391 268 121 18 chr3 106110629 106110852 -53488931 + L1_Rod LINE L1 5117 5394 -486 1 1394 826 191 7 0 chr3 106111274 106111421 -53488362 - B1_Mus1 SINE Alu 0 148 1 1 1394 1291 102 27 0 chr3 106111444 106111630 -53488153 - B2_Mm2 SINE B2 -3 192 2 1 1394 4910 89 48 7 chr3 106111720 106112433 -53487350 - L1_Mus4 LINE L1 -5 6631 5890 1 1394 236 266 12 48 chr3 106112524 106112607 -53487176 + PB1D10 SINE Alu 38 117 0 1 1394 1094 172 118 4 chr3 106113052 106113314 -53486469 - Lx3C LINE L1 -654 6322 6031 1 1394 2902 141 76 17 chr3 106113466 106114252 -53485531 + RLTR13D1 LTR ERVK 1 860 -163 1 1394 686 262 29 29 chr3 106114247 106114455 -53485328 - RLTR15 LTR ERVK -151 208 1 1 1394 2679 61 8 8 chr3 106114467 106114828 -53484955 - L1Md_F2 LINE L1 -52 6530 6170 1 1394 1098 90 0 0 chr3 106115021 106115199 -53484584 + (CA)n Simple_repeat Simple_repeat 1 178 0 1 1394 3699 162 28 42 chr3 106115565 106116439 -53483344 - L1_Mur2 LINE L1 -2080 3797 2937 1 1394 2982 274 59 19 chr3 106116510 106117486 -53482297 - Lx5 LINE L1 -16 7034 6020 1 1394 2415 285 80 2 chr3 106117487 106118494 -53481289 + Lx9 LINE L1 6552 7637 -7 1 1394 1221 203 39 49 chr3 106119921 106120271 -53479512 - RMER16 LTR ERVK -228 305 1 1 1394 361 142 14 0 chr3 106121024 106121106 -53478677 - Lx5 LINE L1 -604 6454 6366 1 1394 584 62 12 0 chr3 106121233 106121314 -53478469 + (TCTA)n Simple_repeat Simple_repeat 1 82 0 1 1394 1421 204 69 3 chr3 106121319 106121706 -53478077 - Lx4A LINE L1 -12 7046 6598 1 1394 1098 114 6 0 chr3 106121709 106121875 -53477908 + Lx4A LINE L1 6449 6615 -443 1 1394 185 279 112 12 chr3 106121905 106121985 -53477798 + MER5A DNA MER1_type 35 122 -67 1 1394 731 276 52 45 chr3 106122719 106123027 -53476756 + RLTR15 LTR ERVK 14 323 -36 1 1394 3234 155 130 0 chr3 106123914 106124514 -53475269 + RLTR33 LTR ERVK 1 678 0 1 1394 369 330 97 10 chr3 106124544 106124740 -53475043 - Lx7 LINE L1 -544 7152 6940 1 1394 2228 138 28 2 chr3 106124764 106125186 -53474597 + L1_Mur2 LINE L1 3094 3526 -2351 1 1394 29 28 0 0 chr3 106125439 106125475 -53474308 + AT_rich Low_complexity Low_complexity 1 36 0 1 1394 8806 116 16 7 chr3 106125788 106127315 -53472468 - MusHAL1 LINE L1 -631 2081 541 1 1394 850 206 11 43 chr3 106127362 106127550 -53472233 + RLTR9A LTR ERVK 185 366 -2 1 1394 3139 14 5 8 chr3 106127572 106127940 -53471843 - IAPLTR1_Mm LTR ERVK 0 367 1 1 1394 29751 103 17 1 chr3 106127967 106134045 -53465738 - L1Md_F2 LINE L1 -3 6579 399 1 1394 906 189 0 0 chr3 106134072 106134252 -53465531 + CT-rich Low_complexity Low_complexity 1 180 0 1 1394 1663 109 28 0 chr3 106134255 106134538 -53465245 - MusHAL1 LINE L1 -2319 393 103 1 1394 1179 148 55 0 chr3 106134530 106134747 -53465036 - L1Md_F LINE L1 -5996 523 295 1 1394 666 114 0 0 chr3 106134758 106134863 -53464920 - L1_Mus2 LINE L1 0 6566 6462 1 1394 405 0 0 0 chr3 106135024 106135069 -53464714 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 1394 697 254 123 15 chr3 106135315 106135575 -53464208 - L1Md_F LINE L1 -5819 700 413 1 1394 3885 213 43 18 chr3 106135741 106136627 -53463156 - RMER13B LTR ERVK 0 908 1 1 1394 207 0 0 0 chr3 106136735 106136758 -53463025 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1 1394 2829 52 23 0 chr3 106137259 106137578 -53462205 - IAPEY2_LTR LTR ERVK -3 354 36 1 1394 408 20 0 0 chr3 106137578 106137627 -53462156 + (CA)n Simple_repeat Simple_repeat 1 49 0 1 1394 2829 52 23 0 chr3 106137627 106137653 -53462130 - IAPEY2_LTR LTR ERVK -322 35 2 1 1394 3332 125 7 7 chr3 106137653 106138193 -53461590 - IAPEy-int LTR ERVK 0 7513 6974 1 1394 182 366 53 9 chr3 106138194 106138307 -53461476 - L3b LINE CR1 -29 453 336 1 1394 1981 52 4 0 chr3 106138323 106138575 -53461208 - IAPEY3-int LTR ERVK -4991 2689 2437 1 1394 473 81 0 0 chr3 106138560 106138622 -53461161 - IAPEY3-int LTR ERVK -2226 5454 5393 1 1394 1779 137 12 9 chr3 106138641 106139023 -53460760 - IAPEz-int LTR ERVK -5907 574 17 1 1394 3041 45 0 0 chr3 106139023 106139377 -53460406 - IAPEY2_LTR LTR ERVK -3 354 1 1 1394 482 0 17 0 chr3 106140033 106140091 -53459692 + (TC)n Simple_repeat Simple_repeat 2 60 0 1 1394 306 0 0 0 chr3 106140091 106140124 -53459659 + (TG)n Simple_repeat Simple_repeat 1 34 0 1 1394 207 0 0 0 chr3 106140124 106140146 -53459637 + (GA)n Simple_repeat Simple_repeat 1 23 0 1 1394 656 352 52 5 chr3 106140146 106140551 -53459232 - L1M2 LINE L1 -2920 3223 2800 1 1394 183 42 0 0 chr3 106141004 106141028 -53458755 + (TATG)n Simple_repeat Simple_repeat 3 26 0 1 1394 380 37 19 0 chr3 106142312 106142366 -53457417 + (CAA)n Simple_repeat Simple_repeat 1 55 0 1 1394 661 293 92 48 chr3 106143437 106143787 -53455996 + Lx9 LINE L1 7119 7488 -156 1 1394 402 21 0 0 chr3 106143787 106143834 -53455949 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 1394 661 293 92 48 chr3 106143834 106143939 -53455844 + Lx9 LINE L1 7489 7593 -51 1 1394 25 75 0 0 chr3 106144074 106144127 -53455656 + AT_rich Low_complexity Low_complexity 1 53 0 1 1394 245 388 63 30 chr3 106144243 106144575 -53455208 + MTD LTR MaLR 26 368 -51 1 1394 4611 47 2 11 chr3 106145154 106145748 -53454035 + L1Md_F2 LINE L1 4973 5565 -318 1 1394 7359 75 16 4 chr3 106145748 106146727 -53453056 + L1Md_F2 LINE L1 5590 6580 -2 1 1394 1577 36 0 25 chr3 106146727 106146924 -53452859 + B2_Mm1a SINE B2 2 193 0 1 1394 4611 47 2 11 chr3 106146924 106146948 -53452835 + L1Md_F2 LINE L1 5566 5585 -298 1 1394 7154 84 14 4 chr3 106146948 106147932 -53451851 + L1Md_F2 LINE L1 5587 6580 -2 1 1394 1023 146 88 0 chr3 106147935 106148140 -53451643 + Lx3_Mus LINE L1 5923 6145 -864 1 1394 6498 141 6 0 chr3 106148139 106149289 -53450494 - L1_Mm LINE L1 -2126 3757 2601 1 1394 1610 92 4 71 chr3 106149295 106149563 -53450220 - L1Md_F2 LINE L1 -19 6563 6314 1 1394 1263 257 20 20 chr3 106150603 106150948 -53448835 + RLTR15 LTR ERVK 1 345 -14 1 1394 36309 50 9 5 chr3 106152668 106158731 -53441052 - L1Md_T LINE L1 0 6582 496 1 1394 991 132 63 6 chr3 106158734 106158946 -53440837 + ORR1A0 LTR MaLR 1 241 -126 1 1394 3695 104 9 3 chr3 106159055 106159636 -53440147 + L1_Mm LINE L1 4876 5459 -424 1 1394 1799 132 9 59 chr3 106159637 106159976 -53439807 + RLTRETN_Mm LTR ERVK 1 322 0 1 1394 31638 87 7 29 chr3 106159977 106164928 -53434855 + MMETn-int LTR ERVK 2 4844 0 1 1394 1705 141 9 62 chr3 106164928 106165268 -53434515 + RLTRETN_Mm LTR ERVK 1 322 0 1 1394 2663 88 0 0 chr3 106165268 106165641 -53434142 + L1_Mm LINE L1 5455 5827 -56 1 1394 645 217 0 0 chr3 106165847 106165967 -53433816 - Lx2 LINE L1 -103 6894 6775 1 1394 1576 148 7 0 chr3 106165965 106166235 -53433548 - Lx2 LINE L1 -352 6645 6374 1 1394 7551 141 13 32 chr3 106166299 106167612 -53432171 + Lx3_Mus LINE L1 5699 6986 -23 1 1394 678 25 0 0 chr3 106167612 106167692 -53432091 + (GAAA)n Simple_repeat Simple_repeat 1 80 0 1 1395 1478 146 61 4 chr3 106168389 106168505 -53431278 - Lx LINE L1 -4 6650 6536 1 1395 291 54 0 0 chr3 106168505 106168542 -53431241 + (CCCA)n Simple_repeat Simple_repeat 1 37 0 1 1395 1478 146 61 4 chr3 106168542 106168686 -53431097 - Lx LINE L1 -119 6535 6376 1 1395 1344 241 22 6 chr3 106169063 106169380 -53430403 + Lx LINE L1 6285 6606 -48 1 1395 1065 85 0 0 chr3 106169380 106169521 -53430262 + B1_Mus1 SINE Alu 2 142 -6 1 1395 366 80 0 0 chr3 106169523 106169573 -53430210 + (TAAA)n Simple_repeat Simple_repeat 3 52 0 1 1395 219 162 13 63 chr3 106170562 106170641 -53429142 + T-rich Low_complexity Low_complexity 4 78 0 1 1395 441 0 0 0 chr3 106171110 106171159 -53428624 + (TA)n Simple_repeat Simple_repeat 1 49 0 1 1395 2261 300 76 23 chr3 106171246 106171940 -53427843 + Lx9 LINE L1 6426 7128 -516 1 1395 1118 91 0 0 chr3 106171940 106172083 -53427700 - B1_Mus2 SINE Alu -3 144 2 1 1395 2261 300 76 23 chr3 106172083 106172113 -53427670 + Lx9 LINE L1 7129 7157 -487 1 1395 378 0 0 0 chr3 106172113 106172155 -53427628 + (TG)n Simple_repeat Simple_repeat 2 43 0 1 1395 2261 300 76 23 chr3 106172155 106172438 -53427345 + Lx9 LINE L1 7158 7487 -157 1 1395 905 217 14 19 chr3 106172460 106172667 -53427116 + L1VL4 LINE L1 364 569 -5733 1 1395 7434 189 27 2 chr3 106172663 106174056 -53425727 + Lx4A LINE L1 5627 7054 -4 1 1395 962 140 5 53 chr3 106174812 106175001 -53424782 + B2_Mm2 SINE B2 2 181 -14 1 1395 2569 136 0 0 chr3 106177480 106177893 -53421890 + L1_Mm LINE L1 2216 2628 -3255 1 1395 2240 93 0 0 chr3 106177893 106178215 -53421568 + L1Md_F2 LINE L1 1987 2308 -3575 1 1395 4804 44 0 0 chr3 106178216 106178790 -53420993 - L1Md_T LINE L1 0 6582 6009 1 1395 3316 28 0 0 chr3 106178791 106179184 -53420599 + L1Md_T LINE L1 5619 6011 -571 1 1395 24058 80 1 1 chr3 106179181 106182469 -53417314 + L1Md_F2 LINE L1 2296 5584 -299 1 1395 7894 51 2 11 chr3 106182471 106183472 -53416311 + L1Md_F2 LINE L1 5587 6578 -4 1 1395 8697 124 8 7 chr3 106183476 106184840 -53414943 + L1_Mm LINE L1 4329 5693 -190 1 1395 9126 129 29 9 chr3 106184825 106185738 -53414045 + L1_Mur1 LINE L1 4356 5266 -620 1 1395 468 0 0 0 chr3 106185738 106185790 -53413993 + (CA)n Simple_repeat Simple_repeat 2 53 0 1 1395 9126 129 29 9 chr3 106185790 106186376 -53413407 + L1_Mur1 LINE L1 5267 5885 -1 1 1395 402 21 0 0 chr3 106186399 106186446 -53413337 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 1 1395 770 132 0 0 chr3 106186457 106186571 -53413212 + L1Md_F LINE L1 177 290 -6326 1 1395 700 45 0 1 chr3 106186575 106186673 -53413110 - ORR1A1 LTR MaLR 0 394 260 1 1395 1251 87 0 0 chr3 106186673 106186845 -53412938 + L1Md_F LINE L1 3317 3488 -2395 1 1395 760 218 0 0 chr3 106186839 106187008 -53412775 + L1_Mur1 LINE L1 4916 5084 -802 1 1395 430 32 0 45 chr3 106187008 106187074 -53412709 + (TTA)n Simple_repeat Simple_repeat 2 64 0 1 1395 6620 201 19 27 chr3 106187076 106188801 -53410982 - Lx2B LINE L1 -22 6978 5278 1 1395 7660 60 3 5 chr3 106188783 106189839 -53409944 - L1_Mus1 LINE L1 0 6567 5515 1 1395 476 135 19 19 chr3 106189824 106189930 -53409853 - Lx2B LINE L1 -574 5303 5198 1 1395 307 79 47 47 chr3 106190164 106190270 -53409513 + T-rich Low_complexity Low_complexity 1 106 0 1 1395 2139 186 26 24 chr3 106190786 106191204 -53408579 + MTC LTR MaLR 3 421 0 1 1395 211 300 35 59 chr3 106192358 106192443 -53407340 - ID SINE ID -136 88 6 1 1395 312 91 0 0 chr3 106192513 106192557 -53407226 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 1395 1482 268 87 13 chr3 106193369 106193820 -53405963 - Lx2B LINE L1 -1 6999 6516 1 1395 496 292 167 0 chr3 106194613 106194846 -53404937 + Lx8 LINE L1 7196 7467 -6 1 1395 885 286 97 9 chr3 106194957 106195296 -53404487 + ORR1D2 LTR MaLR 1 369 -1 1 1395 421 367 65 32 chr3 106195416 106195863 -53403920 - Lx7 LINE L1 0 7473 7002 1 1395 1626 320 42 26 chr3 106195883 106196524 -53403259 - Lx7 LINE L1 -812 6884 6234 1 1395 678 69 0 0 chr3 106196573 106196674 -53403109 + (TC)n Simple_repeat Simple_repeat 2 102 0 1 1395 297 0 0 0 chr3 106196674 106196706 -53403077 + (TG)n Simple_repeat Simple_repeat 2 34 0 2 1395 586 235 54 81 chr3 106196782 106196967 -53402816 + B2_Mm2 SINE B2 1 180 -15 2 1395 325 256 0 22 chr3 106198342 106198434 -53401349 - Lx9 LINE L1 -49 7595 7506 2 1395 444 19 0 0 chr3 106198454 106198507 -53401276 + (TG)n Simple_repeat Simple_repeat 2 54 0 2 1395 21 0 0 0 chr3 106199073 106199094 -53400689 + AT_rich Low_complexity Low_complexity 1 21 0 2 1395 650 287 43 25 chr3 106199321 106199714 -53400069 + L1MA8 LINE L1 4962 5361 -782 2 1395 29749 107 4 6 chr3 106199834 106205072 -53394711 + L1Md_F2 LINE L1 358 5585 -298 2 1395 6812 85 39 4 chr3 106205073 106206023 -53393760 + L1Md_F2 LINE L1 5587 6569 -13 2 1395 373 283 140 36 chr3 106206186 106206629 -53393154 + L1MA8 LINE L1 5649 6137 -154 2 1395 640 312 6 0 chr3 106206660 106206817 -53392966 + RSINE1 SINE B4 8 165 0 2 1395 32 0 0 0 chr3 106207676 106207708 -53392075 + AT_rich Low_complexity Low_complexity 1 32 0 2 1395 23 0 0 0 chr3 106207986 106208009 -53391774 + AT_rich Low_complexity Low_complexity 1 23 0 2 1395 237 273 79 11 chr3 106208236 106208325 -53391458 - PB1D7 SINE Alu -5 115 21 2 1395 928 245 90 10 chr3 106208335 106208624 -53391159 + Lx9 LINE L1 7130 7441 -203 2 1395 1127 106 10 0 chr3 106208624 106208833 -53390950 + (GAAA)n Simple_repeat Simple_repeat 1 211 0 2 1395 271 295 25 13 chr3 106209774 106209853 -53389930 + B4A SINE B4 66 145 -147 2 1395 603 195 85 0 chr3 106209802 106209920 -53389863 + B1F SINE Alu 9 136 -13 2 1395 495 0 0 0 chr3 106209924 106209979 -53389804 + (GGAA)n Simple_repeat Simple_repeat 3 57 0 2 1395 404 312 14 0 chr3 106211460 106211601 -53388182 + RodERV21-int LTR ERV1 4409 4551 -440 2 1395 829 178 0 20 chr3 106212343 106212492 -53387291 + B1_Mus2 SINE Alu 1 146 -1 2 1395 878 279 51 29 chr3 106212767 106213118 -53386665 - ORR1E LTR MaLR 0 359 1 2 1395 875 254 149 25 chr3 106213171 106213446 -53386337 + MTE-int LTR MaLR 1221 1529 -51 2 1395 6435 188 29 6 chr3 106213794 106215075 -53384708 + Lx2B LINE L1 5686 6995 -5 2 1395 7492 89 5 1 chr3 106215670 106217331 -53382452 + L1_Mus1 LINE L1 4898 6567 0 2 1395 8215 72 0 17 chr3 106217376 106218494 -53381289 + L1Md_Gf LINE L1 44 1142 -5380 2 1395 12256 26 0 1 chr3 106221332 106222846 -53376937 + L1Md_T LINE L1 4074 5586 -297 2 1395 8416 34 1 0 chr3 106222846 106223841 -53375942 + L1Md_T LINE L1 5587 6582 0 2 1395 423 0 0 0 chr3 106224384 106224431 -53375352 + (CATA)n Simple_repeat Simple_repeat 2 48 0 2 1395 240 306 0 16 chr3 106225895 106225958 -53373825 + ID4_ SINE ID 5 66 -17 2 1395 546 119 0 0 chr3 106225971 106226055 -53373728 + (TGG)n Simple_repeat Simple_repeat 3 86 0 2 1395 245 176 14 0 chr3 106226312 106226386 -53373397 + (ATG)n Simple_repeat Simple_repeat 2 76 0 2 1395 186 43 0 0 chr3 106226391 106226414 -53373369 + (CTG)n Simple_repeat Simple_repeat 1 23 0 2 1395 33 25 0 0 chr3 106226478 106226518 -53373265 + AT_rich Low_complexity Low_complexity 1 40 0 2 1395 222 62 0 0 chr3 106226768 106226800 -53372983 + (GA)n Simple_repeat Simple_repeat 1 32 0 2 1395 1351 310 22 2 chr3 106227017 106227463 -53372320 - MERVL_2A-int LTR ERVL -3467 2294 1840 2 1395 406 325 119 0 chr3 106228443 106228569 -53371214 - ID_B1 SINE B4 0 224 84 2 1395 2338 217 97 2 chr3 106228587 106229206 -53370577 - Lx9 LINE L1 -8 7636 6959 2 1395 1525 250 21 66 chr3 106229360 106229784 -53369999 - RMER15 LTR ERVL -1 574 170 2 1395 335 346 0 0 chr3 106230294 106230401 -53369382 + PB1D10 SINE Alu 10 116 -1 2 1395 723 158 14 0 chr3 106230409 106230555 -53369228 - L1_Mus3 LINE L1 -6 6632 6485 2 1395 569 147 0 0 chr3 106230558 106230653 -53369130 + L1_Mus3 LINE L1 6349 6443 -195 2 1395 14929 149 9 4 chr3 106230645 106233490 -53366293 - L1_Mus4 LINE L1 -665 5971 3110 2 1395 5413 121 14 27 chr3 106233490 106233757 -53366026 + RMER17D LTR ERVK 1 273 -616 2 1395 1743 127 16 45 chr3 106233757 106234043 -53365740 + L1Md_F3 LINE L1 6278 6562 -22 2 1395 5255 134 25 72 chr3 106234043 106235069 -53364714 + RLTR13A3 LTR ERVK 1 978 0 2 1395 1743 127 16 45 chr3 106235069 106235095 -53364688 + L1Md_F3 LINE L1 6563 6581 -3 2 1395 5413 121 14 27 chr3 106235095 106235725 -53364058 + RMER17D LTR ERVK 274 887 -2 2 1395 7392 117 23 17 chr3 106235728 106236755 -53363028 - MusHAL1 LINE L1 -801 1911 874 2 1395 246 62 0 0 chr3 106236755 106236787 -53362996 + (CTG)n Simple_repeat Simple_repeat 1 32 0 2 1395 7392 117 23 17 chr3 106236787 106237081 -53362702 - MusHAL1 LINE L1 -1839 873 583 2 1395 823 120 32 26 chr3 106237080 106237234 -53362549 - Lx LINE L1 -90 6564 6410 2 1395 32 43 0 0 chr3 106237409 106237455 -53362328 + AT_rich Low_complexity Low_complexity 1 46 0 2 1395 2123 172 28 3 chr3 106237701 106238062 -53361721 - MTC LTR MaLR -44 377 8 2 1395 603 194 119 18 chr3 106238065 106238233 -53361550 - MTC-int LTR MaLR 0 1258 1074 2 1395 6748 104 63 0 chr3 106238238 106239355 -53360428 + L1VL1 LINE L1 15 1208 -2490 2 1395 1602 97 143 39 chr3 106239390 106239670 -53360113 + RLTR27 LTR ERVK 1 309 0 2 1395 355 51 9 0 chr3 106239695 106239748 -53360035 + RLTR10-int LTR ERVK 163 267 -7314 2 1395 594 249 45 50 chr3 106239780 106239979 -53359804 + RLTR10-int LTR ERVK 655 852 -1135 2 1395 250 279 0 55 chr3 106239981 106240091 -53359692 + A-rich Low_complexity Low_complexity 2 105 0 2 1395 573 0 13 25 chr3 106240282 106240361 -53359422 + (GAAAA)n Simple_repeat Simple_repeat 2 79 0 2 1395 840 295 47 51 chr3 106240425 106241135 -53358648 + MMERVK10C-int LTR ERVK 3653 4359 -3222 2 1395 2659 32 0 0 chr3 106241157 106241473 -53358310 - L1Md_A LINE L1 -1 6581 6266 2 1395 580 70 23 0 chr3 106241473 106241559 -53358224 + L1_Mm LINE L1 3545 3632 -2251 2 1395 2039 295 29 31 chr3 106241637 106242656 -53357127 + MMERVK10C-int LTR ERVK 4462 5477 -2104 2 1395 344 300 18 24 chr3 106242873 106243037 -53356746 + MMERVK10C-int LTR ERVK 6907 7069 -512 2 1395 1803 216 24 41 chr3 106243103 106243514 -53356269 - RLTR1D LTR ERV1 -18 587 184 2 1395 851 233 10 21 chr3 106243519 106243712 -53356071 - RLTR1D LTR ERV1 -363 242 52 2 1395 1327 160 0 0 chr3 106243814 106244051 -53355732 + MMERVK10C-int LTR ERVK 7345 7581 0 2 1395 2054 125 13 13 chr3 106244051 106244360 -53355423 + RLTR27 LTR ERVK 1 309 0 2 1395 289 95 0 0 chr3 106244363 106244405 -53355378 + L1_Mus1 LINE L1 725 766 -5850 2 1395 30949 96 5 4 chr3 106244407 106250102 -53349681 + L1_Mus1 LINE L1 878 6566 -1 2 1395 2426 212 53 25 chr3 106250128 106250690 -53349093 - MTC-int LTR MaLR -198 1060 483 2 1395 3949 177 41 10 chr3 106252897 106253729 -53346054 - L1_Mur2 LINE L1 -320 5557 4700 2 1395 3984 260 77 55 chr3 106253730 106255054 -53344729 + Lx5 LINE L1 5666 7018 -32 2 1395 897 10 0 0 chr3 106255055 106255157 -53344626 + (GGAGA)n Simple_repeat Simple_repeat 4 105 0 2 1395 411 21 0 0 chr3 106255177 106255225 -53344558 + (TAG)n Simple_repeat Simple_repeat 3 50 0 2 1395 581 265 0 56 chr3 106255400 106255544 -53344239 + ID_B1 SINE B4 80 215 -9 2 1395 7624 123 19 104 chr3 106255905 106258567 -53341216 + L1_Mus4 LINE L1 4217 6634 -2 2 1395 379 261 62 50 chr3 106258863 106259024 -53340759 - LTR73 LTR ERV1 -234 338 176 2 1395 395 362 63 0 chr3 106259107 106259234 -53340549 + ID_B1 SINE B4 75 209 -15 2 1395 193 29 29 29 chr3 106259237 106259272 -53340511 + (TTATA)n Simple_repeat Simple_repeat 5 39 0 2 1395 262 367 62 35 chr3 106259355 106259468 -53340315 - LTR16A LTR ERVL -196 255 140 2 1395 1038 289 89 35 chr3 106260148 106260610 -53339173 + RMER5 LTR ERV1 33 519 -15 2 1395 498 281 8 0 chr3 106261052 106261180 -53338603 - ID_B1 SINE B4 -6 218 90 2 1395 541 269 142 53 chr3 106261508 106261810 -53337973 - ORR1E LTR MaLR -25 334 6 2 1395 477 289 25 38 chr3 106262069 106262086 -53337697 + ID_B1 SINE B4 69 224 0 2 1395 795 207 0 7 chr3 106262086 106262227 -53337556 + B1_Mur1 SINE Alu 9 148 -1 2 1395 256 345 146 35 chr3 106262698 106263041 -53336742 - RMER5 LTR ERV1 -28 506 126 2 1395 250 338 0 0 chr3 106263331 106263399 -53336384 + Charlie12 DNA MER1_type 2 69 -2804 2 1395 240 69 50 33 chr3 106264573 106264633 -53335150 + (TTTG)n Simple_repeat Simple_repeat 4 64 0 2 1395 1183 28 7 27 chr3 106264633 106264782 -53335001 - B1_Mm SINE Alu 0 147 2 2 1395 540 319 25 0 chr3 106265708 106265868 -53333915 + RSINE1 SINE B4 2 165 0 2 1395 276 133 0 0 chr3 106266145 106266205 -53333578 + (TC)n Simple_repeat Simple_repeat 1 60 0 2 1395 390 21 0 0 chr3 106266206 106266253 -53333530 + (TG)n Simple_repeat Simple_repeat 2 48 0 2 1395 323 279 62 4 chr3 106266331 106266453 -53333330 - B4 SINE B4 -130 162 27 2 1395 434 316 17 9 chr3 106266533 106266648 -53333135 - ID_B1 SINE B4 -29 195 80 2 1395 604 296 5 48 chr3 106266680 106266868 -53332915 - B3A SINE B2 -16 182 3 2 1395 645 252 0 0 chr3 106266879 106267018 -53332765 - B1F SINE Alu -6 143 5 2 1395 381 43 0 0 chr3 106267612 106267659 -53332124 + (CA)n Simple_repeat Simple_repeat 1 47 0 2 1395 524 234 63 0 chr3 106268622 106268728 -53331055 + B3A SINE B2 1 113 -85 2 1395 1709 227 73 58 chr3 106268728 106269220 -53330563 + RLTR40 LTR ERVK 1 499 -318 2 1395 2276 182 45 0 chr3 106269220 106269622 -53330161 - MTC LTR MaLR 0 421 2 2 1395 1170 206 60 57 chr3 106269624 106269938 -53329845 + RLTR40 LTR ERVK 496 810 -7 2 1395 2897 23 19 25 chr3 106270005 106270276 -53329507 + L1Md_F3 LINE L1 6211 6488 -96 2 1395 2978 35 0 0 chr3 106270276 106270622 -53329161 + ORR1A0 LTR MaLR 1 346 0 2 1395 2897 23 19 25 chr3 106270622 106270714 -53329069 + L1Md_F3 LINE L1 6489 6572 -12 2 1395 22 0 0 0 chr3 106270714 106270736 -53329047 + AT_rich Low_complexity Low_complexity 1 22 0 2 1395 326 246 12 3 chr3 106270753 106270835 -53328948 + PB1D10 SINE Alu 19 103 -46 2 1395 231 224 20 0 chr3 106270840 106270889 -53328894 + GA-rich Low_complexity Low_complexity 1 50 0 2 1395 28 0 0 0 chr3 106270918 106270946 -53328837 + AT_rich Low_complexity Low_complexity 1 28 0 2 1395 764 289 38 14 chr3 106271062 106271273 -53328510 + ID_B1 SINE B4 9 224 0 2 1395 631 33 0 22 chr3 106271470 106271562 -53328221 + (TG)n Simple_repeat Simple_repeat 2 91 0 2 1395 405 208 9 0 chr3 106271600 106271706 -53328077 - L1_Mur3 LINE L1 -6763 949 843 2 1395 946 331 20 4 chr3 106271699 106272187 -53327596 - L1_Mur3 LINE L1 -7166 546 51 2 1395 368 291 27 0 chr3 106272190 106272300 -53327483 + PB1D7 SINE Alu 4 116 -4 2 1395 228 214 0 9 chr3 106272318 106272425 -53327358 + GA-rich Low_complexity Low_complexity 1 106 0 2 1395 972 131 17 0 chr3 106272444 106272619 -53327164 + (GAGAA)n Simple_repeat Simple_repeat 3 180 0 2 1395 765 204 0 20 chr3 106272753 106272903 -53326880 + B1_Mus1 SINE Alu 2 148 0 3 1395 573 55 0 0 chr3 106272966 106273039 -53326744 + (GA)n Simple_repeat Simple_repeat 2 74 0 3 1395 390 91 0 0 chr3 106273042 106273097 -53326686 + (GGA)n Simple_repeat Simple_repeat 3 57 0 3 1395 671 271 0 20 chr3 106273249 106273396 -53326387 - B1F SINE Alu 0 149 6 3 1395 300 365 20 26 chr3 106273441 106273593 -53326190 + MIRb SINE MIR 98 248 -20 3 1395 835 230 88 29 chr3 106273869 106274209 -53325574 + L1MC2 LINE L1 5854 6213 -131 3 1395 209 167 0 40 chr3 106274273 106274323 -53325460 + CT-rich Low_complexity Low_complexity 2 49 0 3 1395 557 257 21 42 chr3 106274351 106274493 -53325290 - B1F1 SINE Alu -2 147 9 3 1395 479 186 10 0 chr3 106274529 106274631 -53325152 + CT-rich Low_complexity Low_complexity 3 105 0 3 1395 1160 70 0 0 chr3 106274636 106274778 -53325005 - B1_Mm SINE Alu -5 142 1 3 1395 1073 287 34 0 chr3 106274851 106275172 -53324611 + L1M1 LINE L1 5450 5781 -519 3 1395 327 281 101 77 chr3 106275878 106276249 -53323534 + RLTR12B LTR ERVK 17 278 -250 3 1395 463 306 0 9 chr3 106276425 106276537 -53323246 + ID_B1 SINE B4 112 222 -2 3 1395 305 217 12 0 chr3 106276588 106276671 -53323112 + GA-rich Low_complexity Low_complexity 1 84 0 3 1395 903 33 8 0 chr3 106277609 106277730 -53322053 - L1Md_T LINE L1 0 6582 6461 3 1395 6941 41 0 3 chr3 106277801 106278677 -53321106 - L1Md_F2 LINE L1 -3 6579 5707 3 1395 8142 60 0 0 chr3 106278677 106279756 -53320027 + L1_Mm LINE L1 4461 5539 -344 3 1395 396 0 0 0 chr3 106280036 106280080 -53319703 + (TG)n Simple_repeat Simple_repeat 2 45 0 3 1395 1180 44 0 0 chr3 106280163 106280300 -53319483 + B1_Mm SINE Alu 1 137 -10 3 1395 948 11 11 68 chr3 106280316 106280507 -53319276 + (CA)n Simple_repeat Simple_repeat 1 180 0 3 1395 236 214 0 0 chr3 106281186 106281228 -53318555 + B2_Mm2 SINE B2 1 42 -153 3 1395 409 230 98 86 chr3 106281475 106281664 -53318119 + RLTR13D3 LTR ERVK 940 1114 0 3 1395 278 333 0 0 chr3 106281855 106281933 -53317850 + MTE-int LTR MaLR 1469 1546 -34 3 1395 581 259 30 22 chr3 106282081 106282215 -53317568 - ID_B1 SINE B4 -3 221 87 3 1395 563 305 55 15 chr3 106282220 106282550 -53317233 + L1P5 LINE L1 5340 5682 -474 3 1395 303 127 0 0 chr3 106282880 106282943 -53316840 + (GA)n Simple_repeat Simple_repeat 2 64 0 3 1395 617 284 54 22 chr3 106283158 106283435 -53316348 + L1MA4 LINE L1 5678 5963 -337 3 1395 316 300 134 6 chr3 106283864 106284035 -53315748 - L1ME3A LINE L1 -178 5995 5803 3 1395 339 25 0 0 chr3 106284043 106284083 -53315700 + (TG)n Simple_repeat Simple_repeat 2 41 0 3 1395 192 224 138 0 chr3 106286255 106286313 -53313470 - L2b LINE L2 0 3375 3310 3 1395 216 0 0 0 chr3 106286355 106286379 -53313404 + (A)n Simple_repeat Simple_repeat 1 24 0 3 1395 369 0 0 0 chr3 106286982 106287023 -53312760 + (TG)n Simple_repeat Simple_repeat 2 42 0 3 1395 283 265 140 49 chr3 106291230 106291373 -53308410 + MIRb SINE MIR 112 267 -1 3 1395 976 227 5 24 chr3 106292277 106292489 -53307294 - B3 SINE B2 -7 209 2 3 1395 1079 38 0 0 chr3 106292506 106292638 -53307145 - B1_Mm SINE Alu -5 142 11 3 1395 395 92 15 0 chr3 106292656 106292721 -53307062 + (TG)n Simple_repeat Simple_repeat 1 66 0 3 1395 495 272 44 0 chr3 106292731 106292867 -53306916 - B3A SINE B2 -56 142 1 3 1395 281 288 196 0 chr3 106292906 106293090 -53306693 - L1MA4 LINE L1 -368 5932 5713 3 1395 181 398 98 39 chr3 106294806 106294908 -53304875 - L2b LINE L2 -25 3350 3243 3 1395 220 366 10 19 chr3 106295869 106295972 -53303811 - L2c LINE L2 -4 3383 3282 3 1395 278 303 81 37 chr3 106295995 106296092 -53303691 + MIRb SINE MIR 33 139 -129 3 1395 333 0 0 0 chr3 106296092 106296129 -53303654 + (TTTA)n Simple_repeat Simple_repeat 4 40 0 3 1395 278 314 57 28 chr3 106296129 106296192 -53303591 + MIRb SINE MIR 140 203 -65 3 1395 378 151 9 126 chr3 106296403 106296496 -53303287 - PB1D9 SINE Alu -50 99 12 3 1395 228 300 70 0 chr3 106297329 106297429 -53302354 + L2c LINE L2 3258 3364 -23 3 1395 405 335 91 15 chr3 106297940 106298137 -53301646 + MIRb SINE MIR 25 236 -32 3 1395 648 158 0 0 chr3 106298215 106298329 -53301454 + GA-rich Low_complexity Low_complexity 1 114 0 3 1396 387 270 40 0 chr3 106299785 106299885 -53299898 + PB1D10 SINE Alu 5 108 -9 3 1396 304 269 0 61 chr3 106301318 106301417 -53298366 - B1F SINE Alu -55 94 2 3 1396 198 0 0 0 chr3 106301498 106301520 -53298263 + (CG)n Simple_repeat Simple_repeat 2 23 0 3 1396 369 0 0 0 chr3 106301520 106301560 -53298223 + (CA)n Simple_repeat Simple_repeat 1 41 0 3 1396 230 208 38 0 chr3 106302384 106302437 -53297346 + CT-rich Low_complexity Low_complexity 1 55 0 3 1396 278 259 0 133 chr3 106302973 106303071 -53296712 + RMER19B LTR ERVK 816 900 -2 3 1396 210 258 15 46 chr3 106303288 106303353 -53296430 - B1_Mur3 SINE Alu -2 147 85 3 1396 453 219 42 0 chr3 106304856 106304952 -53294831 + PB1D10 SINE Alu 9 108 -9 3 1396 310 300 30 8 chr3 106304952 106304987 -53294796 + ID_B1 SINE B4 90 223 -1 3 1396 482 156 75 32 chr3 106305469 106305562 -53294221 - ID_B1 SINE B4 -20 204 108 3 1396 25 0 0 0 chr3 106305910 106305935 -53293848 + AT_rich Low_complexity Low_complexity 1 25 0 3 1396 776 277 9 27 chr3 106306890 106307109 -53292674 - ID_B1 SINE B4 -6 218 4 3 1396 404 299 19 45 chr3 106307111 106307265 -53292518 - MER58B DNA MER1_type -40 301 152 3 1396 501 141 0 0 chr3 106309064 106309149 -53290634 + (TTTC)n Simple_repeat Simple_repeat 3 87 0 3 1396 21 0 0 0 chr3 106309551 106309572 -53290211 + AT_rich Low_complexity Low_complexity 1 21 0 3 1396 742 246 26 26 chr3 106311643 106311835 -53287948 - B3A SINE B2 -6 192 1 3 1396 225 291 0 0 chr3 106311938 106311993 -53287790 + ZP3AR Satellite Satellite 28 82 -130 3 1396 298 276 66 0 chr3 106311955 106312031 -53287752 + ID2 SINE ID 3 83 0 3 1396 476 241 96 22 chr3 106312183 106312205 -53287578 + B4 SINE B4 76 220 -71 3 1396 686 115 106 0 chr3 106312205 106312318 -53287465 + B1_Mm SINE Alu 17 141 -6 3 1396 243 79 0 0 chr3 106312328 106312366 -53287417 + (CCAA)n Simple_repeat Simple_repeat 2 39 0 3 1396 408 179 0 0 chr3 106312947 106313025 -53286758 + (TA)n Simple_repeat Simple_repeat 2 79 0 3 1396 242 175 0 0 chr3 106313203 106313243 -53286540 + MER46C DNA MER2_type 289 328 -10 3 1396 225 243 152 63 chr3 106313532 106313611 -53286172 + PB1D10 SINE Alu 26 111 -6 3 1396 313 256 73 0 chr3 106313741 106313823 -53285960 - ID_B1 SINE B4 -29 195 108 3 1396 270 0 0 0 chr3 106314384 106314414 -53285369 + (A)n Simple_repeat Simple_repeat 1 30 0 3 1396 264 292 14 0 chr3 106314824 106314896 -53284887 + PB1D10 SINE Alu 9 81 -36 3 1396 335 255 96 34 chr3 106315027 106315173 -53284610 - MIR SINE MIR -100 162 8 3 1396 219 152 0 0 chr3 106316452 106316498 -53283285 + A-rich Low_complexity Low_complexity 1 46 0 3 1396 239 214 0 0 chr3 106318200 106318242 -53281541 - B3A SINE B2 -155 43 2 3 1396 839 225 110 0 chr3 106318865 106318914 -53280869 - B3 SINE B2 -5 211 163 3 1396 663 48 0 0 chr3 106318914 106318997 -53280786 + (TG)n Simple_repeat Simple_repeat 2 84 0 3 1396 839 225 110 0 chr3 106318997 106319129 -53280654 - B3 SINE B2 -54 162 11 3 1396 304 287 80 44 chr3 106319174 106319287 -53280496 + PB1D10 SINE Alu 1 117 0 3 1396 227 270 40 0 chr3 106319506 106319580 -53280203 - ID4_ SINE ID -6 77 1 3 1396 219 36 0 0 chr3 106319937 106319965 -53279818 + (CAAAAA)n Simple_repeat Simple_repeat 3 30 0 3 1396 211 330 19 29 chr3 106320617 106320720 -53279063 - MIR SINE MIR -29 233 132 3 1396 376 236 0 0 chr3 106321220 106321292 -53278491 - ID4 SINE ID -9 74 3 3 1396 28 0 0 0 chr3 106321301 106321329 -53278454 + AT_rich Low_complexity Low_complexity 1 28 0 3 1396 1216 62 0 0 chr3 106321446 106321592 -53278191 + B1_Mus1 SINE Alu 3 148 0 3 1396 287 154 15 0 chr3 106322679 106322744 -53277039 + (TA)n Simple_repeat Simple_repeat 1 66 0 3 1396 25 31 0 0 chr3 106322763 106322795 -53276988 + AT_rich Low_complexity Low_complexity 1 32 0 3 1396 253 270 12 119 chr3 106323564 106323648 -53276135 - ID2 SINE ID -8 75 1 3 1396 336 325 79 0 chr3 106323664 106323790 -53275993 - ID_B1 SINE B4 0 224 89 3 1396 526 327 28 73 chr3 106323819 106324037 -53275746 - ID_B1 SINE B4 -16 208 1 3 1396 3297 96 0 4 chr3 106324200 106324692 -53275091 + L1_Mm LINE L1 4421 4910 -973 3 1396 255 34 0 70 chr3 106324741 106324805 -53274978 + L1_Mus1 LINE L1 6523 6635 -1 3 1396 228 295 37 37 chr3 106324886 106324967 -53274816 + PB1D9 SINE Alu 33 113 -7 3 1396 7651 102 15 2 chr3 106325067 106326302 -53273481 + L1_Mur1 LINE L1 2284 3534 -2352 3 1396 6037 71 47 6 chr3 106326302 106327138 -53272645 + Lx3A LINE L1 6099 6968 -13 3 1396 5201 197 12 107 chr3 106327138 106327266 -53272517 + L1_Mur3 LINE L1 3527 3527 -2353 3 1396 7057 30 0 0 chr3 106327266 106328091 -53271692 + L1Md_T LINE L1 5756 6580 -2 3 1396 5201 197 12 107 chr3 106328091 106328344 -53271439 + L1_Mur3 LINE L1 3527 3748 -2132 3 1396 1624 195 109 8 chr3 106328346 106328703 -53271080 + MTD LTR MaLR 13 405 -14 3 1396 654 226 36 0 chr3 106328805 106328942 -53270841 + B1F SINE Alu 3 144 -5 3 1396 186 43 0 0 chr3 106328943 106328966 -53270817 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 3 1396 499 266 64 2 chr3 106329089 106329218 -53270565 + B1_Mus2 SINE Alu 2 149 0 4 1396 207 100 0 0 chr3 106329225 106329255 -53270528 + (CATA)n Simple_repeat Simple_repeat 2 31 0 4 1396 24 53 0 0 chr3 106329866 106329904 -53269879 + AT_rich Low_complexity Low_complexity 1 38 0 4 1396 644 256 22 0 chr3 106329904 106330041 -53269742 - B3A SINE B2 -56 142 3 4 1396 300 220 123 57 chr3 106330145 106330251 -53269532 - PB1D10 SINE Alu 0 117 5 4 1396 342 292 0 0 chr3 106330892 106330957 -53268826 - ID4 SINE ID -8 75 11 4 1396 23 0 0 0 chr3 106332997 106333020 -53266763 + AT_rich Low_complexity Low_complexity 1 23 0 4 1396 648 247 27 0 chr3 106333099 106333245 -53266538 + B3 SINE B2 67 216 0 4 1396 465 162 13 47 chr3 106333612 106333720 -53266063 - B3A SINE B2 -111 105 2 4 1396 23 0 0 0 chr3 106333918 106333941 -53265842 + AT_rich Low_complexity Low_complexity 1 23 0 4 1396 207 100 0 0 chr3 106334329 106334359 -53265424 + (TTTC)n Simple_repeat Simple_repeat 3 32 0 4 1396 450 202 96 0 chr3 106334502 106334596 -53265187 + PB1D10 SINE Alu 15 117 0 4 1396 262 234 67 34 chr3 106334629 106334731 -53265052 + B2_Mm2 SINE B2 82 190 -3 4 1396 453 319 33 46 chr3 106335282 106335433 -53264350 - B1F SINE Alu 0 149 1 4 1396 284 245 205 26 chr3 106335589 106335740 -53264043 - L1MA8 LINE L1 -42 6249 6072 4 1396 314 240 44 52 chr3 106335957 106336093 -53263690 + BC1_Mm scRNA scRNA 2 136 -16 4 1396 532 255 65 26 chr3 106336529 106336682 -53263101 - RSINE1 SINE B4 -3 162 4 4 1396 775 354 56 16 chr3 106336857 106337178 -53262605 + MER2 DNA MER2_type 12 345 0 4 1396 439 298 40 47 chr3 106337238 106337386 -53262397 + ID_B1 SINE B4 67 213 -11 4 1396 538 239 20 61 chr3 106337528 106337675 -53262108 - ID_B1 SINE B4 0 224 84 4 1396 248 0 0 30 chr3 106337700 106337733 -53262050 + (CAAAA)n Simple_repeat Simple_repeat 4 35 0 4 1396 397 292 143 0 chr3 106338495 106338663 -53261120 - MER3 DNA MER1_type -9 200 9 4 1396 1372 220 13 63 chr3 106339115 106339430 -53260353 + MTEb LTR MaLR 1 299 -80 4 1396 533 178 32 0 chr3 106339491 106339603 -53260180 + B3A SINE B2 3 118 -77 4 1396 988 93 0 0 chr3 106339625 106339764 -53260019 + L1_Mur1 LINE L1 2446 2584 -3302 4 1396 605 274 92 0 chr3 106339812 106339976 -53259807 - B3A SINE B2 -18 180 2 4 1396 213 121 0 0 chr3 106340204 106340237 -53259546 + (T)n Simple_repeat Simple_repeat 1 33 0 4 1396 1183 55 0 0 chr3 106340237 106340383 -53259400 - B1_Mus2 SINE Alu 0 147 2 4 1396 236 70 105 0 chr3 106340513 106340570 -53259213 + Lx9 LINE L1 7578 7640 -4 4 1396 225 313 115 48 chr3 106341562 106341666 -53258117 + PB1D10 SINE Alu 1 111 -6 4 1396 254 279 14 56 chr3 106342905 106342977 -53256806 - ID2 SINE ID -14 69 1 4 1396 330 273 85 90 chr3 106343000 106343189 -53256594 - MIR SINE MIR -3 265 78 4 1396 837 207 49 0 chr3 106343986 106344150 -53255633 + Lx7 LINE L1 6586 6757 -939 4 1396 1116 218 23 0 chr3 106344150 106344370 -53255413 + URR1B DNA MER1_type 1 225 0 4 1396 1067 209 279 25 chr3 106344370 106344942 -53254841 + Lx7 LINE L1 6750 7466 -230 4 1396 344 315 80 44 chr3 106345041 106345154 -53254629 - PB1 SINE Alu -10 117 1 4 1396 484 180 16 0 chr3 106345778 106345900 -53253883 + (TA)n Simple_repeat Simple_repeat 1 124 0 4 1396 21 0 0 0 chr3 106346115 106346136 -53253647 + AT_rich Low_complexity Low_complexity 1 21 0 4 1396 525 265 68 8 chr3 106346317 106346450 -53253333 - B1F SINE Alu -8 141 1 4 1396 22 56 0 0 chr3 106347360 106347396 -53252387 + AT_rich Low_complexity Low_complexity 1 36 0 4 1396 608 209 35 28 chr3 106349241 106349384 -53250399 + B1_Mur2 SINE Alu 1 144 -5 4 1396 553 27 27 0 chr3 106349399 106349474 -53250309 + (GAA)n Simple_repeat Simple_repeat 2 78 0 4 1396 185 277 25 151 chr3 106349693 106349812 -53249971 - L4 LINE RTE -165 1864 1761 4 1396 269 276 0 0 chr3 106351984 106352042 -53247741 - ID4_ SINE ID 0 83 26 4 1396 434 299 10 0 chr3 106352911 106353008 -53246775 + RSINE1 SINE B4 9 106 -59 4 1396 253 254 17 0 chr3 106353017 106353076 -53246707 + C-rich Low_complexity Low_complexity 2 61 0 4 1396 343 271 142 18 chr3 106353220 106353389 -53246394 + MER3 DNA MER1_type 16 205 -4 4 1396 226 284 45 0 chr3 106353398 106353465 -53246318 - MIRc SINE MIR -116 152 83 4 1396 197 104 43 29 chr3 106353989 106354058 -53245725 + (TCTG)n Simple_repeat Simple_repeat 4 73 0 4 1396 531 284 42 14 chr3 106354129 106354272 -53245511 - B4 SINE B4 -79 213 67 4 1396 392 266 70 8 chr3 106354489 106354618 -53245165 + B1F SINE Alu 3 139 -10 4 1396 400 214 14 0 chr3 106355283 106355353 -53244430 - RSINE1 SINE B4 -21 144 74 4 1396 890 261 138 45 chr3 106355352 106355487 -53244296 - RCHARR1 DNA MER1_type -135 839 708 4 1396 1452 118 18 0 chr3 106355487 106355707 -53244076 + URR1B DNA MER1_type 2 225 0 4 1396 890 280 201 44 chr3 106355707 106356252 -53243531 - RCHARR1 DNA MER1_type -267 707 37 4 1396 392 0 21 0 chr3 106356630 106356678 -53243105 + (TCTA)n Simple_repeat Simple_repeat 3 51 0 4 1396 484 259 34 17 chr3 106356961 106357079 -53242704 + ID_B1 SINE B4 10 129 -95 4 1396 408 88 0 0 chr3 106357826 106357883 -53241900 + (TG)n Simple_repeat Simple_repeat 1 57 0 4 1396 183 319 75 21 chr3 106358649 106358742 -53241041 - MIR SINE MIR -27 235 138 4 1396 245 300 125 110 chr3 106358758 106359039 -53240744 - ORR1D1 LTR MaLR -5 369 85 4 1396 282 299 51 10 chr3 106359134 106359232 -53240551 - MIR SINE MIR -159 103 2 4 1396 667 233 139 0 chr3 106359349 106359529 -53240254 - B3 SINE B2 -11 205 1 4 1396 461 250 62 41 chr3 106359620 106359646 -53240137 + B3A SINE B2 9 30 -168 4 1396 2311 119 99 3 chr3 106359646 106359925 -53239858 + Lx3A LINE L1 6571 6848 -133 4 1396 182 37 0 36 chr3 106359925 106359953 -53239830 + (GGGTG)n Simple_repeat Simple_repeat 3 29 0 4 1396 2311 119 99 3 chr3 106359953 106360036 -53239747 + Lx3A LINE L1 6849 6967 -14 4 1396 295 60 40 0 chr3 106360036 106360086 -53239697 + (TTAA)n Simple_repeat Simple_repeat 3 54 0 4 1396 461 263 64 54 chr3 106360086 106360244 -53239539 + B3A SINE B2 31 189 -6 4 1396 2416 232 86 16 chr3 106361740 106362441 -53237342 + L1_Rod LINE L1 5098 5847 0 4 1396 527 163 9 5 chr3 106362678 106362774 -53237009 + ORR1C1-int LTR MaLR 527 625 -745 4 1396 3239 36 0 0 chr3 106362795 106363185 -53236598 + MTA_Mm LTR MaLR 1 390 -6 4 1396 314 277 24 0 chr3 106363175 106363258 -53236525 + B1F SINE Alu 27 111 -38 4 1396 3482 187 99 3 chr3 106363194 106363939 -53235844 + ORR1C1-int LTR MaLR 693 1509 0 4 1396 1272 148 298 3 chr3 106363939 106364231 -53235552 + ORR1C1 LTR MaLR 1 378 0 4 1396 243 103 0 0 chr3 106364542 106364581 -53235202 + (TC)n Simple_repeat Simple_repeat 2 40 0 4 1396 32 0 0 0 chr3 106365268 106365300 -53234483 + AT_rich Low_complexity Low_complexity 1 32 0 4 1396 390 333 30 15 chr3 106365366 106365500 -53234283 + RSINE1 SINE B4 2 137 -28 4 1396 330 87 0 0 chr3 106365512 106365558 -53234225 + (TCCC)n Simple_repeat Simple_repeat 3 48 0 4 1396 7731 61 1 7 chr3 106365782 106367122 -53232661 - L1Md_F2 LINE L1 -1 6581 5255 4 1396 10024 69 14 1 chr3 106367120 106368460 -53231323 + L1Md_F2 LINE L1 3893 5250 -633 4 1396 228 86 0 0 chr3 106368796 106368831 -53230952 + (T)n Simple_repeat Simple_repeat 1 35 0 4 1396 636 292 42 59 chr3 106369691 106370054 -53229729 - MER31A LTR ERV1 -13 472 1 4 1396 21 0 0 0 chr3 106370873 106370894 -53228889 + AT_rich Low_complexity Low_complexity 1 21 0 4 1396 374 232 76 81 chr3 106370942 106371153 -53228630 - Lx7 LINE L1 -33 7663 7454 4 1396 6070 196 76 8 chr3 106371206 106372413 -53227370 - Lx7 LINE L1 -336 7360 6072 4 1396 323 192 14 0 chr3 106372574 106372647 -53227136 + C-rich Low_complexity Low_complexity 4 77 0 4 1396 585 0 0 0 chr3 106372648 106372713 -53227070 + (TC)n Simple_repeat Simple_repeat 2 66 0 4 1396 258 281 184 20 chr3 106373216 106373412 -53226371 + L2a LINE L2 3198 3425 -1 4 1396 227 333 67 17 chr3 106373960 106373999 -53225784 - B4A SINE B4 -167 125 1 4 1396 437 225 0 0 chr3 106373999 106374079 -53225704 - B3A SINE B2 -118 80 1 4 1396 216 0 0 0 chr3 106374352 106374376 -53225407 + (A)n Simple_repeat Simple_repeat 1 24 0 4 1396 228 35 0 0 chr3 106374441 106374470 -53225313 + (TTG)n Simple_repeat Simple_repeat 2 30 0 4 1396 651 13 0 0 chr3 106374643 106374719 -53225064 + (TG)n Simple_repeat Simple_repeat 2 77 0 4 1396 656 318 6 0 chr3 106374761 106374940 -53224843 - B3A SINE B2 -18 180 1 4 1396 2025 128 40 9 chr3 106374985 106375333 -53224450 + RLTR15 LTR ERVK 1 359 0 4 1396 519 123 0 0 chr3 106375404 106375485 -53224298 + (TG)n Simple_repeat Simple_repeat 2 82 0 4 1396 234 306 125 0 chr3 106375508 106375580 -53224203 - PB1D7 SINE Alu -21 99 19 4 1396 273 57 0 0 chr3 106377077 106377112 -53222671 + (TTG)n Simple_repeat Simple_repeat 1 35 0 4 1396 371 292 145 7 chr3 106377372 106377510 -53222273 + RSINE1 SINE B4 5 161 -4 4 1396 1161 56 7 0 chr3 106377876 106378020 -53221763 + B1_Mus1 SINE Alu 3 147 -1 4 1396 186 133 0 0 chr3 106378022 106378052 -53221731 + (GAA)n Simple_repeat Simple_repeat 2 31 0 4 1396 207 0 0 0 chr3 106378370 106378393 -53221390 + (ATTG)n Simple_repeat Simple_repeat 3 25 0 4 1396 297 0 0 0 chr3 106378635 106378668 -53221115 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 4 1396 491 268 188 0 chr3 106378756 106378957 -53220826 + MER44C DNA MER2_type 46 301 -432 4 1396 8249 34 2 4 chr3 106378982 106379980 -53219803 + L1Md_F2 LINE L1 5587 6582 0 4 1396 2072 67 4 0 chr3 106380004 106380272 -53219511 - L1_Mus1 LINE L1 0 6567 6299 4 1396 1005 59 7 0 chr3 106380278 106380414 -53219369 + B1_Mm SINE Alu 11 147 0 4 1396 870 293 112 25 chr3 106380446 106380484 -53219299 + MER44C DNA MER2_type 295 332 -401 4 1396 1354 97 5 0 chr3 106380484 106380669 -53219114 + B2_Mm1t SINE B2 5 190 -3 4 1396 870 293 112 25 chr3 106380669 106381033 -53218750 + MER44C DNA MER2_type 333 732 -1 4 1396 818 305 131 27 chr3 106381075 106381940 -53217843 - L1MD2 LINE L1 0 6359 5398 4 1396 377 183 0 14 chr3 106382147 106382219 -53217564 + PB1D9 SINE Alu 50 120 0 5 1396 2091 148 47 13 chr3 106382264 106382647 -53217136 + Lx LINE L1 6250 6645 -9 5 1396 347 294 117 18 chr3 106382680 106382693 -53217090 - B4 SINE B4 -169 123 112 5 1396 1131 75 0 0 chr3 106382693 106382839 -53216944 + B1_Mus2 SINE Alu 2 147 0 5 1396 347 294 117 18 chr3 106382839 106382936 -53216847 - B4 SINE B4 -181 111 2 5 1396 354 275 30 30 chr3 106383076 106383211 -53216572 + L1_Rod LINE L1 94 228 -6944 5 1396 1285 208 11 60 chr3 106383215 106383496 -53216287 - ORR1B1 LTR MaLR 0 394 128 5 1396 1149 191 107 45 chr3 106383557 106383848 -53215935 + L1_Rod LINE L1 490 798 -6374 5 1396 827 271 96 58 chr3 106383892 106384256 -53215527 - RMER4A LTR ERVK -23 443 66 5 1396 2543 154 72 193 chr3 106384256 106384539 -53215244 + L1_Mur3 LINE L1 1224 1511 -4368 5 1396 1152 89 0 0 chr3 106384539 106384696 -53215087 + B2_Mm2 SINE B2 2 158 -37 5 1396 386 20 0 19 chr3 106384697 106384749 -53215034 + (TAAA)n Simple_repeat Simple_repeat 3 53 0 5 1396 2543 154 72 193 chr3 106384749 106385250 -53214533 + L1_Mur3 LINE L1 1513 2052 -3828 5 1396 319 244 72 12 chr3 106385257 106385340 -53214443 + Lx7 LINE L1 6441 6528 -1168 5 1396 252 111 37 0 chr3 106385326 106385380 -53214403 + Lx9 LINE L1 7587 7642 -2 5 1396 6634 150 48 10 chr3 106385470 106386081 -53213702 - Lx4A LINE L1 0 7058 6421 5 1396 3171 44 21 3 chr3 106386081 106386470 -53213313 - MTA_Mm LTR MaLR 0 396 1 5 1396 6634 150 48 10 chr3 106386470 106387044 -53212739 - Lx4A LINE L1 -638 6420 5828 5 1396 11953 64 4 4 chr3 106387044 106389323 -53210460 - L1Md_F2 LINE L1 0 6582 4301 5 1396 2056 194 5 5 chr3 106389372 106389811 -53209972 - L1_Mur2 LINE L1 -2787 3090 2652 5 1396 3883 47 19 0 chr3 106389814 106390280 -53209503 - MT2C_Mm LTR ERVL 0 475 1 5 1396 302 0 0 0 chr3 106390280 106390318 -53209465 - MERVL-int LTR ERVL 0 5485 5448 5 1396 258 203 25 63 chr3 106390318 106390397 -53209386 - ORR1A3-int LTR MaLR -1323 640 565 5 1396 12074 56 8 4 chr3 106390535 106392100 -53207683 - MERVL-int LTR ERVL -129 5356 3786 5 1396 1299 82 70 42 chr3 106392100 106392524 -53207259 - RLTR6_Mm LTR ERV1 -70 584 37 5 1396 7616 44 3 0 chr3 106392632 106393580 -53206203 - MERVL-int LTR ERVL -1695 3790 2840 5 1396 4413 8 2 12 chr3 106393580 106394078 -53205705 - MT2_Mm LTR ERVL 0 493 1 5 1396 302 0 0 0 chr3 106394078 106394116 -53205667 - MERVL-int LTR ERVL 0 5485 5448 5 1396 390 167 46 35 chr3 106394116 106394203 -53205580 - ORR1A3-int LTR MaLR -1323 640 553 5 1396 5570 24 1 0 chr3 106394203 106394875 -53204908 - MERVL-int LTR ERVL -125 5360 4688 5 1396 4413 8 2 12 chr3 106395092 106395590 -53204193 - MT2_Mm LTR ERVL 0 493 1 5 1396 18701 53 22 11 chr3 106395590 106398061 -53201722 - MERVL-int LTR ERVL -2641 2844 345 5 1396 428 55 0 0 chr3 106398063 106398118 -53201665 - L1Md_F3 LINE L1 -487 6097 6043 5 1396 7124 35 0 0 chr3 106398120 106398965 -53200818 + L1Md_A LINE L1 5738 6582 0 5 1396 213 65 0 0 chr3 106398971 106399002 -53200781 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 5 1396 342 0 0 0 chr3 106399223 106399261 -53200522 + (TTG)n Simple_repeat Simple_repeat 2 39 0 5 1396 5258 80 9 77 chr3 106399325 106400142 -53199641 + L1Md_F2 LINE L1 5820 6580 -2 5 1396 2578 85 64 154 chr3 106400154 106400404 -53199379 + L1_Mm LINE L1 5092 5358 -525 5 1396 216 247 37 110 chr3 106400404 106400486 -53199297 + B4A SINE B4 2 77 -215 5 1396 2578 85 64 154 chr3 106400486 106400698 -53199085 + L1_Mm LINE L1 5359 5586 -297 5 1396 7687 67 1 8 chr3 106400698 106401699 -53198084 + L1Md_F2 LINE L1 5587 6580 -2 5 1396 12789 165 23 117 chr3 106401905 106403627 -53196156 + L1_Mur2 LINE L1 2658 4435 -1442 5 1396 1072 83 7 40 chr3 106403627 106403778 -53196005 + B1_Mus1 SINE Alu 2 147 -1 5 1396 12789 165 23 117 chr3 106403778 106404118 -53195665 + L1_Mur2 LINE L1 4436 4768 -1109 5 1396 738 292 69 32 chr3 106404118 106404464 -53195319 - RLTR10D LTR ERVK 0 359 1 5 1396 12789 165 23 117 chr3 106404464 106405412 -53194371 + L1_Mur2 LINE L1 4769 5700 -177 5 1396 2759 227 38 13 chr3 106405414 106406051 -53193732 - MERVL_2A-int LTR ERVL -804 4957 4305 5 1396 517 177 41 17 chr3 106406080 106406245 -53193538 + ORR1A1 LTR MaLR 66 231 -163 5 1396 1019 83 2 5 chr3 106406239 106406391 -53193392 - ORR1A1 LTR MaLR -250 144 4 5 1396 1537 127 0 0 chr3 106406391 106406627 -53193156 - L1_Mur1 LINE L1 -86 5800 5565 5 1396 3391 87 2 33 chr3 106406621 106406996 -53192787 - L1VL2 LINE L1 -2158 1457 1100 5 1396 1537 52 5 0 chr3 106406996 106407187 -53192596 - B2_Mm1t SINE B2 -1 192 1 5 1396 3391 94 2 22 chr3 106407187 106407477 -53192306 - L1VL2 LINE L1 -2516 1099 809 5 1396 35384 55 4 7 chr3 106407474 106413690 -53186093 - L1Md_F2 LINE L1 -2 6580 384 5 1396 4440 106 31 7 chr3 106413687 106414397 -53185386 - L1VL2 LINE L1 -5512 823 97 5 1396 1478 241 41 23 chr3 106414426 106414864 -53184919 - L1VL4 LINE L1 -5673 629 184 5 1396 401 125 0 0 chr3 106414872 106414936 -53184847 - L1_Mur2 LINE L1 -1819 4067 4004 5 1396 1205 109 17 0 chr3 106414968 106415143 -53184640 + B2_Mm1t SINE B2 2 179 -14 5 1396 3271 113 5 25 chr3 106415169 106415740 -53184043 + L1_Mur1 LINE L1 3411 3970 -1916 5 1396 2804 185 29 65 chr3 106415744 106416612 -53183171 - L1_Mur2 LINE L1 -3138 2742 2052 5 1396 333 0 0 0 chr3 106416612 106416649 -53183134 + (TC)n Simple_repeat Simple_repeat 2 38 0 5 1396 302 45 23 0 chr3 106416649 106416692 -53183091 + (TG)n Simple_repeat Simple_repeat 2 46 0 5 1396 2653 212 36 164 chr3 106416692 106416839 -53182944 - L1_Mur2 LINE L1 -3829 2051 1898 5 1396 333 0 0 0 chr3 106416839 106416876 -53182907 + (TAA)n Simple_repeat Simple_repeat 2 38 0 5 1396 2653 212 36 164 chr3 106416876 106417113 -53182670 - L1_Mur2 LINE L1 -3983 1897 1651 5 1396 1963 242 56 25 chr3 106417115 106417670 -53182113 + Lx9 LINE L1 7043 7614 -30 5 1396 2542 210 104 174 chr3 106417857 106418846 -53180937 + RMER1B Other Other 44 953 -113 5 1396 243 0 0 0 chr3 106418846 106418873 -53180910 + (TTG)n Simple_repeat Simple_repeat 1 27 0 5 1396 2542 210 104 174 chr3 106418873 106418974 -53180809 + RMER1B Other Other 954 1056 -10 5 1396 425 269 0 11 chr3 106419540 106419634 -53180149 + MTE-int LTR MaLR 1432 1524 -56 5 1396 256 398 10 0 chr3 106420000 106420103 -53179680 - L1M3a LINE L1 -5417 538 435 5 1396 358 243 85 26 chr3 106421644 106421930 -53177853 - L1M3 LINE L1 -1529 4611 4277 5 1396 21 0 0 0 chr3 106422004 106422025 -53177758 + AT_rich Low_complexity Low_complexity 1 21 0 5 1396 32428 75 7 4 chr3 106422321 106428002 -53171781 - L1Md_F2 LINE L1 0 6582 885 5 1396 1869 91 15 130 chr3 106428004 106428473 -53171310 - RMER17D2 LTR ERVK -106 703 289 5 1396 235 342 0 27 chr3 106428540 106428615 -53171168 - RLTR20C LTR ERVK -373 161 89 5 1396 3041 220 61 3 chr3 106428898 106429631 -53170152 - Lx2B LINE L1 -1 6999 6224 5 1396 985 324 46 41 chr3 106429653 106430275 -53169508 - Lx9 LINE L1 -6 7467 6826 5 174 1210 235 97 23 chr3 106430329 106430681 -53169102 + L1_Rod LINE L1 5340 5717 -130 5 1397 342 182 0 0 chr3 106430683 106430738 -53169045 - ORR1C1 LTR MaLR 0 378 324 5 1397 303 28 0 0 chr3 106430744 106430780 -53169003 + (TTAA)n Simple_repeat Simple_repeat 1 36 0 5 1397 3899 220 60 26 chr3 106430780 106430885 -53168898 - Lx5 LINE L1 -16 7034 6918 5 1397 387 0 0 0 chr3 106430885 106430928 -53168855 + (CA)n Simple_repeat Simple_repeat 2 44 0 5 1397 3899 220 60 26 chr3 106430928 106431781 -53168002 - Lx5 LINE L1 -133 6917 6044 5 1397 260 259 19 0 chr3 106431781 106431850 -53167933 - RLTR25A LTR ERVK 0 1103 969 5 1397 3165 209 39 118 chr3 106431848 106431924 -53167859 - RLTR25A LTR ERVK -203 825 747 5 1397 351 0 0 0 chr3 106431924 106431963 -53167820 + (TTTTG)n Simple_repeat Simple_repeat 5 43 0 5 1397 1120 79 0 0 chr3 106431964 106432104 -53167679 - B1_Mus1 SINE Alu -7 141 2 5 1397 3711 206 28 21 chr3 106432104 106432918 -53166865 - RLTR25A LTR ERVK -338 765 3 5 1397 4807 159 10 10 chr3 106432922 106433961 -53165822 - Lx5 LINE L1 -1009 6041 4991 5 1397 6251 145 68 20 chr3 106433931 106435197 -53164586 - Lx5 LINE L1 -134 5743 4418 5 1397 2774 155 43 34 chr3 106435186 106435895 -53163888 - Lx3C LINE L1 -900 6076 5367 5 1397 3810 121 52 10 chr3 106435895 106436507 -53163276 - L1_Mus4 LINE L1 -1 6635 5998 5 1397 7174 94 23 18 chr3 106436584 106437775 -53162008 - L1_Mus1 LINE L1 -1 6996 5622 5 1397 15989 85 68 9 chr3 106437773 106440437 -53159346 + L1_Mus1 LINE L1 2929 5585 -298 5 1397 8083 46 2 3 chr3 106440438 106441437 -53158346 + L1Md_F3 LINE L1 5587 6584 0 5 1397 7201 146 3 5 chr3 106441445 106442732 -53157051 + L1_Mur2 LINE L1 3440 4724 -1153 5 1397 207 0 0 0 chr3 106442732 106442755 -53157028 + (TTAA)n Simple_repeat Simple_repeat 1 23 0 5 1397 21 0 0 0 chr3 106442755 106442776 -53157007 + AT_rich Low_complexity Low_complexity 1 21 0 5 1397 719 182 7 0 chr3 106442776 106442930 -53156853 - L1_Mur2 LINE L1 -580 5297 5143 5 1397 5577 126 125 32 chr3 106442916 106443280 -53156503 - L1_Mur2 LINE L1 -3361 2516 2054 5 1397 465 19 0 0 chr3 106443280 106443334 -53156449 + (TG)n Simple_repeat Simple_repeat 2 55 0 5 1397 5577 126 125 32 chr3 106443334 106444009 -53155774 - L1_Mur2 LINE L1 -3824 2053 1379 5 1397 2669 113 74 2 chr3 106444009 106444427 -53155356 - Lx LINE L1 0 6654 6207 5 1397 4507 113 43 13 chr3 106444427 106444675 -53155108 - L1_Mur2 LINE L1 -4499 1378 1117 5 1397 540 0 0 0 chr3 106444676 106444736 -53155047 + (TTTA)n Simple_repeat Simple_repeat 2 61 0 5 1397 234 250 0 27 chr3 106444736 106444763 -53155020 + T-rich Low_complexity Low_complexity 46 72 0 5 1397 216 0 0 0 chr3 106444763 106444787 -53154996 + (GTTTG)n Simple_repeat Simple_repeat 2 25 0 5 1397 993 97 37 0 chr3 106444787 106444921 -53154862 - B1_Mus1 SINE Alu -9 139 1 5 1397 234 250 0 27 chr3 106444921 106444966 -53154817 + T-rich Low_complexity Low_complexity 2 45 0 5 1397 3834 166 62 10 chr3 106445023 106446323 -53153460 - L1_Mur2 LINE L1 -5965 1121 375 5 1397 822 21 0 0 chr3 106446323 106446419 -53153364 + (GGGAA)n Simple_repeat Simple_repeat 5 100 0 5 1397 1134 181 137 23 chr3 106446419 106446493 -53153290 - L1_Mur2 LINE L1 -6578 508 413 5 1397 2043 236 29 4 chr3 106446494 106447051 -53152732 - L1_Mur3 LINE L1 -133 5747 5177 5 1397 7877 93 7 2 chr3 106447086 106448929 -53150854 - L1Md_F2 LINE L1 -1 6581 4731 5 1397 30698 89 11 4 chr3 106449153 106455337 -53144446 - L1Md_F2 LINE L1 0 6582 357 5 1397 1804 104 8 105 chr3 106455337 106455690 -53144093 - L1Md_F2 LINE L1 -1138 4745 4427 5 1397 14462 93 115 12 chr3 106455691 106459155 -53140628 - L1Md_F2 LINE L1 -12 6570 2709 5 1397 4098 129 36 3 chr3 106459147 106459833 -53139950 - L1Md_F2 LINE L1 -5493 1123 415 5 1397 6335 135 6 8 chr3 106459832 106461185 -53138598 - L1_Mus4 LINE L1 -29 6607 5262 5 1397 1345 171 30 0 chr3 106461198 106461462 -53138321 - L1_Mus4 LINE L1 -957 4926 4655 5 1397 778 68 349 0 chr3 106461457 106461603 -53138180 - MusHAL1 LINE L1 -1138 1574 1378 5 1397 1259 101 76 9 chr3 106461601 106461812 -53137971 - L1_Mus4 LINE L1 -285 6351 6127 5 1397 463 67 0 0 chr3 106461809 106461869 -53137914 - L1_Mm LINE L1 -1039 4844 4785 5 1397 1925 148 6 0 chr3 106461866 106462198 -53137585 + L1_Mm LINE L1 5166 5499 -384 5 1397 736 307 93 19 chr3 106462230 106462543 -53137240 + L1M2 LINE L1 4637 4976 -1167 5 1397 546 16 0 0 chr3 106462543 106462606 -53137177 + (GAAA)n Simple_repeat Simple_repeat 2 64 0 5 1397 736 316 99 21 chr3 106462606 106463228 -53136555 + L1M2 LINE L1 4946 5620 -260 5 1397 402 231 34 5 chr3 106463229 106463335 -53136448 - ORR1C1 LTR MaLR 0 394 287 5 1397 436 223 27 132 chr3 106463374 106463611 -53136172 + L1VL1 LINE L1 64 392 -6030 5 1397 370 257 42 14 chr3 106463662 106463804 -53135979 + L1VL4 LINE L1 664 809 -5807 5 1397 25634 124 16 8 chr3 106463806 106465219 -53134564 + L1VL4 LINE L1 725 2169 -3714 5 1397 3223 43 10 2 chr3 106465219 106465612 -53134171 - MTA_Mm LTR MaLR 0 396 1 5 1397 7379 87 42 3 chr3 106465612 106466669 -53133114 - MTA_Mm-int LTR MaLR 0 1098 1 5 1397 3148 53 8 2 chr3 106466669 106467063 -53132720 - MTA_Mm LTR MaLR 0 396 1 5 1397 25634 112 19 6 chr3 106467063 106470363 -53129420 + L1VL4 LINE L1 2170 5501 -382 5 1397 413 183 13 39 chr3 106470363 106470474 -53129309 + ORR1B2-int LTR MaLR 1423 1540 -40 5 1397 1898 187 55 6 chr3 106470466 106470811 -53128972 + ORR1B2 LTR MaLR 6 367 0 5 1397 305 127 24 37 chr3 106470838 106470920 -53128863 + MTC-int LTR MaLR 1060 1140 -118 5 1397 4204 239 52 80 chr3 106470931 106471079 -53128704 - Lx6 LINE L1 -179 7281 7129 5 1397 405 0 0 0 chr3 106471079 106471124 -53128659 + (TA)n Simple_repeat Simple_repeat 1 45 0 6 1397 4204 239 52 80 chr3 106471124 106471451 -53128332 - Lx6 LINE L1 -332 7128 6887 5 1397 732 77 0 0 chr3 106471451 106471555 -53128228 + (TC)n Simple_repeat Simple_repeat 1 104 0 6 1397 4204 239 52 80 chr3 106471555 106472298 -53127485 - Lx6 LINE L1 -574 6886 6114 5 1397 861 120 0 0 chr3 106472298 106472431 -53127352 + (TC)n Simple_repeat Simple_repeat 2 134 0 6 1397 4204 239 52 80 chr3 106472431 106472557 -53127226 - Lx6 LINE L1 -1347 6113 5975 5 1397 9208 163 10 8 chr3 106472656 106474485 -53125298 + L1_Mur1 LINE L1 2572 4403 -1483 6 1397 279 292 97 52 chr3 106474491 106474646 -53125137 - RLTR25A LTR ERVK -5 1098 937 6 1397 3523 90 0 0 chr3 106475089 106475609 -53124174 + L1_Mm LINE L1 4166 4685 -1198 6 1397 32805 90 17 13 chr3 106475612 106481139 -53118644 + L1Md_A LINE L1 31 5586 -297 6 1397 7609 59 9 1 chr3 106481139 106482113 -53117670 + L1Md_F3 LINE L1 5587 6568 -16 6 1397 6164 163 16 63 chr3 106482121 106484230 -53115553 + Lx2 LINE L1 4664 6645 -352 6 1397 1284 121 22 0 chr3 106484243 106484466 -53115317 + Lx2 LINE L1 6770 6997 0 6 1397 3816 165 12 50 chr3 106484484 106484555 -53115228 - L1_Mm LINE L1 -945 4938 4872 6 1397 1106 85 0 0 chr3 106484555 106484696 -53115087 + B1_Mus1 SINE Alu 2 142 -6 6 1397 3816 165 12 50 chr3 106484696 106485436 -53114347 - L1_Mm LINE L1 -1012 4871 4158 6 1397 8476 125 29 15 chr3 106485435 106487111 -53112672 + Lx2 LINE L1 5259 6959 -38 6 1397 491 277 71 55 chr3 106487271 106487454 -53112329 + ID_B1 SINE B4 18 203 -21 6 1397 407 227 102 0 chr3 106488177 106488305 -53111478 + L1MA6 LINE L1 6154 6294 -6 6 1397 432 267 140 18 chr3 106488353 106488639 -53111144 + L1MB7 LINE L1 5311 5631 -543 6 1397 352 202 27 9 chr3 106488693 106488803 -53110980 - Lx9 LINE L1 0 7644 7533 6 1397 378 0 0 0 chr3 106488824 106488866 -53110917 + (CA)n Simple_repeat Simple_repeat 2 43 0 6 1397 625 258 15 0 chr3 106488900 106489032 -53110751 - ID_B1 SINE B4 -7 217 84 6 1397 305 250 23 0 chr3 106489040 106489128 -53110655 + L1MB7 LINE L1 5674 5763 -411 6 1397 326 335 109 27 chr3 106489155 106489376 -53110407 + L1MB7 LINE L1 5817 6055 -129 6 1397 1196 62 0 0 chr3 106489400 106489546 -53110237 + B1_Mm SINE Alu 2 147 0 6 1397 1078 273 84 40 chr3 106489728 106490323 -53109460 - L1MC2 LINE L1 -50 6294 5674 6 1397 1989 245 51 42 chr3 106490327 106490873 -53108910 - RMER15 LTR ERVL -3 572 22 6 1397 235 317 0 0 chr3 106490937 106490997 -53108786 - RMER15 LTR ERVL -515 60 1 6 1397 320 323 140 26 chr3 106490997 106491226 -53108557 - L1MD LINE L1 -2318 5677 5423 6 1397 316 275 0 0 chr3 106491240 106491320 -53108463 + MLT1A0 LTR MaLR 1 80 -285 6 1397 5768 61 18 1 chr3 106491320 106492055 -53107728 + L1Md_F2 LINE L1 5836 6582 0 6 1397 423 259 40 7 chr3 106492408 106492556 -53107227 - ERVL-int LTR ERVL -1762 3995 3843 6 1397 267 152 0 0 chr3 106492556 106492602 -53107181 + CT-rich Low_complexity Low_complexity 3 48 0 6 1397 793 101 60 0 chr3 106492612 106492761 -53107022 - L1_Mus4 LINE L1 0 6638 6481 6 1397 22849 151 17 5 chr3 106492761 106497564 -53102219 - L1_Mus4 LINE L1 -385 6251 1390 6 1397 253 0 26 26 chr3 106497564 106497602 -53102181 + (TTG)n Simple_repeat Simple_repeat 2 39 0 6 1397 24 0 0 0 chr3 106497612 106497636 -53102147 + AT_rich Low_complexity Low_complexity 1 24 0 6 1397 10094 103 6 20 chr3 106497701 106500000 -53099783 - L1_Mus2 LINE L1 0 6566 4297 6 1397 18983 145 6 52 chr3 106500002 106504101 -53095682 - L1VL4 LINE L1 -1589 4294 394 1 1397 1442 98 4 1 chr3 106504101 106504389 -53095394 - L1VL2 LINE L1 -2518 1097 808 2 1397 5204 136 54 51 chr3 106504413 106505995 -53093788 - L1_Mus2 LINE L1 0 6566 4987 3 1397 37219 48 2 7 chr3 106505991 106511960 -53087823 - L1Md_F2 LINE L1 -1 6581 651 4 1397 21886 143 13 15 chr3 106511960 106515987 -53083796 - L1_Mus2 LINE L1 -880 5003 967 3 1397 8544 92 15 71 chr3 106515978 106518172 -53081611 - L1Md_T LINE L1 0 6582 4542 5 1397 2290 115 0 0 chr3 106518186 106518542 -53081241 - L1Md_T LINE L1 -2025 3858 3503 5 1397 1481 137 158 0 chr3 106518545 106518873 -53080910 - L1_Mur1 LINE L1 -4302 1584 1205 6 1397 587 90 0 33 chr3 106518877 106518889 -53080894 - B1_Mm SINE Alu -1 146 135 7 1397 207 69 0 0 chr3 106518889 106518918 -53080865 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 8 1397 587 90 0 33 chr3 106518918 106518997 -53080786 - B1_Mm SINE Alu -13 134 58 7 1397 774 86 0 0 chr3 106518998 106519103 -53080680 - B1_Mus1 SINE Alu -41 107 3 9 1397 263 250 16 8 chr3 106519103 106519119 -53080664 - ORR1B1-int LTR MaLR -756 753 632 1 1397 1913 172 8 4 chr3 106519123 106519498 -53080285 - L1_Mur1 LINE L1 -5821 1163 674 6 1397 254 250 34 11 chr3 106519615 106519704 -53080079 - L1_Mur1 LINE L1 -6152 830 740 1 1397 258 103 0 0 chr3 106519756 106519795 -53079988 - L1_Mur2 LINE L1 -942 4935 4897 1 1397 1200 202 24 143 chr3 106519793 106520296 -53079487 + L1_Mur3 LINE L1 2900 3342 -2538 1 1397 3154 213 63 7 chr3 106520342 106521107 -53078676 - ORR1A3-int LTR MaLR -1111 852 45 1 1397 5226 154 67 29 chr3 106521107 106522122 -53077661 - Lx3C LINE L1 -236 6740 5687 1 1397 353 355 64 15 chr3 106522242 106522445 -53077338 + MIR SINE MIR 19 231 -31 1 1397 429 401 48 42 chr3 106522755 106523091 -53076692 + LTR16A LTR ERVL 7 344 -107 1 1397 188 86 29 0 chr3 106523280 106523315 -53076468 + (CA)n Simple_repeat Simple_repeat 1 36 0 1 1397 651 179 25 8 chr3 106523322 106523440 -53076343 - B1_Mm SINE Alu -13 134 15 1 1397 493 316 30 0 chr3 106523741 106523874 -53075909 - ID_B1 SINE B4 -5 219 83 2 1397 23 33 0 0 chr3 106527608 106527638 -53072145 + AT_rich Low_complexity Low_complexity 1 30 0 2 1397 330 351 34 42 chr3 106527867 106527986 -53071797 - PB1 SINE Alu -2 125 8 2 1397 228 67 0 0 chr3 106528625 106528655 -53071128 + (GGGAGA)n Simple_repeat Simple_repeat 1 30 0 2 1397 21 0 0 0 chr3 106528954 106528975 -53070808 + AT_rich Low_complexity Low_complexity 1 21 0 2 1397 229 220 0 20 chr3 106529578 106529629 -53070154 + GA-rich Low_complexity Low_complexity 4 53 0 2 1397 296 306 87 16 chr3 106529640 106529766 -53070017 + L2 LINE L2 1778 1912 -1507 2 1397 7408 108 14 4 chr3 106529903 106531775 -53068008 - L1_Mus3 LINE L1 -1 6637 4748 2 1397 234 345 130 7 chr3 106531811 106531957 -53067826 + L2 LINE L2 1973 2136 -1283 2 1397 492 300 190 4 chr3 106532672 106532930 -53066853 - MER58B DNA MER1_type -34 307 2 2 1397 258 32 0 0 chr3 106532974 106533005 -53066778 + (TTGG)n Simple_repeat Simple_repeat 2 32 0 2 1397 225 279 74 0 chr3 106533008 106533098 -53066685 - B1F SINE Alu -13 104 2 3 1397 198 71 0 0 chr3 106536853 106536881 -53062902 + (GTTTG)n Simple_repeat Simple_repeat 2 29 0 3 1397 376 176 119 64 chr3 106536883 106536992 -53062791 - PB1D10 SINE Alu -1 116 2 3 1397 282 278 167 0 chr3 106538798 106538870 -53060913 - Tigger7 DNA MER2_type -1 2490 2407 3 1397 330 333 106 1 chr3 106538934 106539118 -53060665 - Tigger7 DNA MER2_type -2282 209 2 3 1397 1172 68 0 0 chr3 106539808 106539956 -53059827 + B1_Mus1 SINE Alu 1 148 0 3 1397 381 131 0 0 chr3 106539956 106540017 -53059766 + (A)n Simple_repeat Simple_repeat 1 61 0 3 1397 22868 123 31 3 chr3 106540099 106544428 -53055355 + L1Md_F LINE L1 425 4876 -1007 3 1397 34453 76 5 13 chr3 106544428 106550551 -53049232 - L1Md_F2 LINE L1 0 6582 512 3 1397 25986 106 51 20 chr3 106550555 106551708 -53048075 - L1_Mm LINE L1 -87 5796 4663 3 1397 3971 84 2 2 chr3 106551708 106552243 -53047540 + L1_Mus1 LINE L1 6032 6566 -1 3 1397 25986 106 51 20 chr3 106552243 106555269 -53044514 - L1_Mm LINE L1 -1221 4662 1487 3 1397 395 235 31 170 chr3 106555382 106555541 -53044242 - L1VL1 LINE L1 -6065 357 221 4 1397 3422 136 40 0 chr3 106555542 106556117 -53043666 - MusHAL1 LINE L1 -2727 627 30 4 1397 1035 268 75 0 chr3 106556227 106556492 -53043291 - Lx8 LINE L1 -226 7247 6963 4 1397 627 176 8 0 chr3 106556639 106556758 -53043025 - L1_Mur2 LINE L1 -716 5161 5042 4 1397 302 196 0 18 chr3 106556759 106556816 -53042967 - URR1B DNA MER1_type -165 60 5 4 1397 355 307 114 102 chr3 106556927 106557242 -53042541 - MER67B LTR ERV1 -382 329 11 4 1397 23 54 0 0 chr3 106557317 106557354 -53042429 + AT_rich Low_complexity Low_complexity 1 37 0 4 1397 24 0 0 0 chr3 106557364 106557388 -53042395 + AT_rich Low_complexity Low_complexity 1 24 0 4 1397 2135 176 49 5 chr3 106557389 106557795 -53041988 - Lx4A LINE L1 -2 7056 6633 4 1397 276 133 0 0 chr3 106557914 106557974 -53041809 + (A)n Simple_repeat Simple_repeat 1 60 0 4 1397 198 103 0 0 chr3 106558034 106558063 -53041720 + (TA)n Simple_repeat Simple_repeat 1 29 0 5 1397 327 295 64 81 chr3 106558063 106558299 -53041484 - HAL1-3A_ME LINE L1 -846 2012 1781 5 1397 315 269 15 0 chr3 106558330 106558397 -53041386 - ID2 SINE ID 0 83 16 5 1397 302 314 37 25 chr3 106559143 106559306 -53040477 + L1MEg1 LINE L1 615 779 -5456 5 1397 297 0 0 0 chr3 106559657 106559690 -53040093 + (TTTTG)n Simple_repeat Simple_repeat 5 37 0 5 1397 336 250 26 88 chr3 106559691 106559805 -53039978 - PB1D10 SINE Alu -8 109 3 5 1397 22 35 0 0 chr3 106559818 106559847 -53039936 + AT_rich Low_complexity Low_complexity 1 29 0 5 1397 248 281 275 0 chr3 106559924 106560056 -53039727 - L1M5 LINE L1 -2412 3734 3567 5 1397 383 247 9 189 chr3 106560315 106560335 -53039448 + ID_B1 SINE B4 78 131 -93 5 1397 476 289 35 9 chr3 106560335 106560450 -53039333 + B1F1 SINE Alu 10 127 -22 5 1397 376 253 0 0 chr3 106560450 106560525 -53039258 + B1F SINE Alu 70 144 -5 6 1397 383 247 9 189 chr3 106560450 106560472 -53039311 + ID_B1 SINE B4 132 198 -26 5 1397 225 333 0 16 chr3 106560675 106560739 -53039044 + ID4 SINE ID 4 66 -17 6 174 3542 75 143 14 chr3 106561190 106561707 -53038076 + MT2B2 LTR ERVL 1 584 0 6 1398 268 344 67 26 chr3 106562162 106562323 -53037460 + MLT1F2 LTR MaLR 3 178 -370 6 1398 314 388 29 12 chr3 106562413 106562585 -53037198 + MLT1F2 LTR MaLR 329 503 -57 6 1398 525 323 23 0 chr3 106562587 106562720 -53037063 + B1F SINE Alu 6 141 -8 6 1398 248 316 0 0 chr3 106563301 106563358 -53036425 - ID4_ SINE ID -1 82 26 6 1398 217 380 13 0 chr3 106563358 106563380 -53036403 - ID SINE ID -141 83 4 6 1398 2517 62 0 58 chr3 106564405 106564765 -53035018 - L1_Mus2 LINE L1 -4 6562 6224 6 1398 342 0 0 0 chr3 106564786 106564824 -53034959 + (CATA)n Simple_repeat Simple_repeat 1 38 0 6 1398 1351 289 68 12 chr3 106566603 106567178 -53032605 + Lx7 LINE L1 5589 6195 -1501 6 1398 3033 147 59 7 chr3 106567190 106567733 -53032050 + L1_Mm LINE L1 4647 5217 -666 7 1398 999 147 122 21 chr3 106567728 106567916 -53031867 + L1_Mm LINE L1 5430 5636 -247 7 1398 2093 283 118 27 chr3 106567916 106568846 -53030937 + Lx8 LINE L1 6455 7469 -4 7 1398 495 87 0 0 chr3 106569192 106569261 -53030522 + (TG)n Simple_repeat Simple_repeat 1 69 0 7 1398 607 306 28 28 chr3 106569261 106569429 -53030354 - B3 SINE B2 -42 174 5 7 1398 212 222 44 0 chr3 106569611 106569656 -53030127 - MIR SINE MIR -126 136 90 7 1398 280 310 50 25 chr3 106571020 106571139 -53028644 + MTD LTR MaLR 74 195 -224 7 1398 692 238 0 27 chr3 106571453 106571600 -53028183 - B1_Mus1 SINE Alu -5 143 1 7 1398 384 280 85 52 chr3 106572548 106572836 -53026947 - L1MA4 LINE L1 -353 5944 5649 7 1398 1166 57 0 0 chr3 106572888 106573029 -53026754 - B1_Mus1 SINE Alu -7 141 1 7 1398 334 266 106 21 chr3 106573030 106573172 -53026611 + L1M2 LINE L1 5365 5518 -779 7 1398 3061 142 21 0 chr3 106573714 106574241 -53025542 - L1_Mur1 LINE L1 -2035 3851 3314 8 1398 386 214 8 8 chr3 106574680 106574807 -53024976 - Lx9 LINE L1 -1 7643 7517 8 1398 208 200 0 39 chr3 106575054 106575106 -53024677 + (TATATG)n Simple_repeat Simple_repeat 1 50 0 8 1398 768 176 0 0 chr3 106575238 106575403 -53024380 + GA-rich Low_complexity Low_complexity 4 168 0 8 1398 369 315 0 0 chr3 106575471 106575560 -53024223 + ID_B1 SINE B4 91 179 -45 8 1398 357 109 0 0 chr3 106575574 106575629 -53024154 + (TG)n Simple_repeat Simple_repeat 1 55 0 8 1398 777 236 158 21 chr3 106575665 106576196 -53023587 + L1MEc LINE L1 1041 1644 -4756 8 1398 371 317 20 84 chr3 106576411 106576614 -53023169 + ORR1E LTR MaLR 2 191 -168 8 1398 351 125 0 0 chr3 106576787 106576859 -53022924 + (TTGG)n Simple_repeat Simple_repeat 4 75 0 8 1398 478 288 123 55 chr3 106577040 106577275 -53022508 + Lx8 LINE L1 7077 7327 -146 8 1398 27 0 0 0 chr3 106577372 106577399 -53022384 + AT_rich Low_complexity Low_complexity 1 27 0 9 1398 622 317 88 18 chr3 106577680 106578011 -53021772 + L1_Mur3 LINE L1 208 561 -7167 9 1398 2826 77 0 0 chr3 106578039 106578405 -53021378 - L1Md_F2 LINE L1 -345 6237 5872 9 1398 2380 85 46 9 chr3 106578405 106578750 -53021033 + L1Md_F2 LINE L1 6225 6582 0 9 1398 6251 189 78 24 chr3 106578784 106579678 -53020105 + L1_Mur3 LINE L1 894 1939 -3941 9 1398 363 44 0 0 chr3 106579678 106579723 -53020060 + (CA)n Simple_repeat Simple_repeat 2 46 0 9 1398 6251 179 103 35 chr3 106579723 106580674 -53019109 + L1_Mur3 LINE L1 1940 2854 -3026 9 1398 8767 63 2 0 chr3 106580678 106581797 -53017986 + L1Md_F2 LINE L1 4465 5585 -298 9 1398 8421 28 0 6 chr3 106581798 106582788 -53016995 + L1Md_F2 LINE L1 5587 6570 -12 9 1398 1691 161 88 37 chr3 106582788 106583245 -53016538 + L1_Mur3 LINE L1 2852 3331 -2549 9 1398 1186 75 0 0 chr3 106583268 106583415 -53016368 + B1_Mus1 SINE Alu 1 147 -1 9 1398 386 65 0 16 chr3 106583420 106583483 -53016300 + (TAAAAA)n Simple_repeat Simple_repeat 4 65 0 9 1398 3814 157 18 8 chr3 106583483 106584209 -53015574 + L1_Mur3 LINE L1 3941 4673 -1207 9 1398 5001 229 67 8 chr3 106584278 106585504 -53014279 + Lx6 LINE L1 5600 6892 -568 9 1398 7983 45 6 3 chr3 106585530 106586507 -53013276 + L1_Mus1 LINE L1 5587 6566 -1 9 1398 2448 233 53 8 chr3 106586527 106587051 -53012732 + Lx6 LINE L1 6912 7459 -1 9 1398 618 301 128 52 chr3 106587053 106587827 -53011956 + L1M5 LINE L1 4316 5143 -1003 9 1398 270 269 0 93 chr3 106587909 106587995 -53011788 + PB1 SINE Alu 22 99 -28 1 1398 414 207 75 41 chr3 106587972 106587990 -53011793 + CYRA11_Mm Unknown Y-chromosome 150 172 -445 1 1398 790 139 8 0 chr3 106587990 106588119 -53011664 - URR1B DNA MER1_type 0 225 96 1 1398 22 0 0 0 chr3 106588246 106588268 -53011515 + AT_rich Low_complexity Low_complexity 1 22 0 1 1398 2682 214 68 5 chr3 106588711 106589325 -53010458 + Lx9 LINE L1 6638 7290 -354 1 1398 333 326 92 11 chr3 106589765 106589944 -53009839 + MIRb SINE MIR 3 199 -69 1 1398 186 224 0 0 chr3 106590152 106590201 -53009582 + A-rich Low_complexity Low_complexity 1 49 0 1 1398 412 314 17 23 chr3 106593302 106593475 -53006308 + L1M2 LINE L1 4718 4889 -1254 1 1398 1205 64 85 23 chr3 106593485 106593630 -53006153 + B2_Mm2 SINE B2 4 147 -48 1 1398 791 72 0 9 chr3 106593630 106593742 -53006041 + (CATATA)n Simple_repeat Simple_repeat 2 112 0 1 1398 1205 64 85 23 chr3 106593742 106593772 -53006011 + B2_Mm2 SINE B2 148 189 -6 1 1398 5999 94 4 0 chr3 106593773 106594700 -53005083 - L1_Mus1 LINE L1 -636 5931 5002 1 1398 4686 71 24 0 chr3 106594700 106595320 -53004463 + L1_Mus1 LINE L1 5931 6565 -2 1 1398 520 266 60 93 chr3 106595371 106595482 -53004301 + L1M2 LINE L1 4914 5020 -1123 1 1398 1022 76 14 14 chr3 106595482 106595629 -53004154 + B1_Mm SINE Alu 1 147 0 1 1398 520 266 60 93 chr3 106595629 106595896 -53003887 + L1M2 LINE L1 5021 5293 -850 1 1398 240 35 0 0 chr3 106595896 106595925 -53003858 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1 1398 520 274 58 90 chr3 106595925 106596083 -53003700 + L1M2 LINE L1 5229 5379 -764 1 1398 3658 214 48 64 chr3 106596132 106597018 -53002765 - Lx2B LINE L1 -4 6996 6124 1 1398 516 72 0 0 chr3 106597018 106597087 -53002696 + (TTTA)n Simple_repeat Simple_repeat 2 70 0 1 1398 3658 224 59 53 chr3 106597087 106597196 -53002587 - Lx2B LINE L1 -877 6123 6051 1 1398 618 118 39 0 chr3 106597202 106597355 -53002428 + (TCTG)n Simple_repeat Simple_repeat 2 160 0 1 1398 387 0 0 0 chr3 106597355 106597398 -53002385 + (CA)n Simple_repeat Simple_repeat 1 43 0 1 1398 3058 180 49 0 chr3 106597419 106597947 -53001836 - Lx5 LINE L1 -234 6816 6263 1 1398 1366 221 32 61 chr3 106597968 106597987 -53001796 - Lx9 LINE L1 -528 7116 7098 1 1398 2058 135 28 6 chr3 106597987 106598307 -53001476 + ORR1A2 LTR MaLR 1 327 0 1 1398 1366 221 32 61 chr3 106598307 106598629 -53001154 - Lx9 LINE L1 -547 7097 6785 1 1398 414 221 101 89 chr3 106598629 106598798 -53000985 - RLTR13D3 LTR ERVK 0 1114 944 1 1398 240 214 0 0 chr3 106599040 106599082 -53000701 - B2_Mm2 SINE B2 -153 42 1 1 1398 27 49 0 0 chr3 106599114 106599155 -53000628 + AT_rich Low_complexity Low_complexity 1 41 0 1 1398 1168 263 52 0 chr3 106599553 106599823 -52999960 - Lx9 LINE L1 -854 6790 6507 1 1398 1586 230 93 35 chr3 106599826 106600222 -52999561 + MTD LTR MaLR 1 419 0 1 1398 1228 259 46 54 chr3 106600223 106600594 -52999189 + MTD-int LTR MaLR 2 369 -889 1 1398 1283 222 67 16 chr3 106600594 106600910 -52998873 + Lx3C LINE L1 6643 6974 -2 1 1398 2680 246 65 73 chr3 106600920 106601546 -52998237 + MTD-int LTR MaLR 380 1009 -249 1 1398 3276 173 33 13 chr3 106601546 106602160 -52997623 - Lx4B LINE L1 -9 7049 6424 1 1398 189 74 0 0 chr3 106602170 106602197 -52997586 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 1398 2680 246 65 73 chr3 106602197 106602445 -52997338 + MTD-int LTR MaLR 1014 1258 0 1 1398 1717 219 58 20 chr3 106602445 106602841 -52996942 + MTD LTR MaLR 1 411 -8 1 1398 353 332 54 54 chr3 106602852 106603167 -52996616 - Lx8 LINE L1 -1125 6348 6034 1 1398 785 242 26 26 chr3 106603223 106603456 -52996327 + Lx9 LINE L1 7197 7429 -215 1 1398 324 0 0 0 chr3 106603567 106603603 -52996180 + (TA)n Simple_repeat Simple_repeat 2 37 0 1 1398 279 0 0 0 chr3 106603609 106603640 -52996143 + (TG)n Simple_repeat Simple_repeat 2 32 0 1 1398 303 266 70 21 chr3 106603680 106603822 -52995961 + Lx7 LINE L1 5680 5828 -1868 1 1398 1087 190 42 5 chr3 106604040 106604252 -52995531 - URR1B DNA MER1_type 0 225 6 1 1398 483 240 13 36 chr3 106604969 106605126 -52994657 - MTC LTR MaLR -8 413 265 1 1398 30231 113 19 5 chr3 106605129 106611155 -52988628 + L1_Mus1 LINE L1 451 6567 0 1 1398 1248 216 99 0 chr3 106611180 106611453 -52988330 - MTC LTR MaLR -119 302 3 1 1398 970 249 82 53 chr3 106612248 106612737 -52987046 - L1M3 LINE L1 -573 5727 5233 1 1398 382 322 20 14 chr3 106612737 106612885 -52986898 - B1F1 SINE Alu 0 149 1 1 1398 704 256 61 93 chr3 106612885 106613254 -52986529 - L1M3 LINE L1 -911 5232 4879 1 1398 3142 158 0 31 chr3 106613372 106613915 -52985868 + L1VL4 LINE L1 4 529 -5773 1 1398 8555 76 11 1 chr3 106613917 106615160 -52984623 + MusHAL1 LINE L1 883 2137 -575 1 1398 22 0 0 0 chr3 106615180 106615202 -52984581 + AT_rich Low_complexity Low_complexity 1 22 0 1 1398 320 302 104 0 chr3 106615220 106615326 -52984457 - B3A SINE B2 -81 117 1 1 1398 902 272 52 81 chr3 106615494 106615842 -52983941 - ORR1D1 LTR MaLR -34 340 3 1 1398 653 63 11 0 chr3 106615888 106615983 -52983800 + (TG)n Simple_repeat Simple_repeat 2 97 0 1 1398 251 203 14 0 chr3 106615984 106616058 -52983725 + GA-rich Low_complexity Low_complexity 2 76 0 1 1398 210 37 0 0 chr3 106616205 106616232 -52983551 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 1398 359 290 0 0 chr3 106616245 106616352 -52983431 + L1MA4A LINE L1 5841 5947 -356 1 1398 1658 238 22 22 chr3 106616398 106616768 -52983015 - ORR1D2 LTR MaLR 0 370 1 1 1398 257 295 50 50 chr3 106616816 106617055 -52982728 + L1MA4A LINE L1 6056 6294 -6 1 1398 1070 135 0 0 chr3 106617224 106617381 -52982402 + B2_Mm2 SINE B2 3 162 -31 1 1398 315 0 0 0 chr3 106617381 106617416 -52982367 + (TGAA)n Simple_repeat Simple_repeat 3 37 0 1 1398 897 214 21 16 chr3 106617416 106617448 -52982335 + B2_Mm1t SINE B2 163 193 0 1 1398 828 150 8 0 chr3 106617700 106617833 -52981950 - URR1B DNA MER1_type 0 225 92 1 1398 1348 96 0 0 chr3 106618257 106618445 -52981338 - L1_Mus1 LINE L1 0 6567 6380 1 1398 1333 31 0 0 chr3 106618445 106618607 -52981176 + L1_Mus1 LINE L1 6247 6408 -159 1 1398 3979 113 27 5 chr3 106619046 106619634 -52980149 - MT2B LTR ERVL 0 601 1 1 1398 1696 202 33 16 chr3 106619739 106620107 -52979676 - ORR1D1 LTR MaLR 0 374 1 1 1398 360 0 0 0 chr3 106621428 106621468 -52978315 + (TA)n Simple_repeat Simple_repeat 2 41 0 1 1398 7046 208 48 41 chr3 106621540 106623251 -52976532 - Lx6 LINE L1 -4 7456 5733 1 1398 1656 293 106 6 chr3 106623335 106624148 -52975635 - L1MC1 LINE L1 -3 6330 5437 1 1398 255 326 22 22 chr3 106624188 106624323 -52975460 + L2a LINE L2 3276 3410 -16 1 1398 237 255 0 0 chr3 106628534 106628585 -52971198 - B1F SINE Alu -2 147 97 1 1398 757 291 84 3 chr3 106629753 106630050 -52969733 + Lx7 LINE L1 6215 6535 -1161 1 1398 3962 159 35 24 chr3 106630378 106631202 -52968581 + L1_Mur3 LINE L1 3452 4284 -1596 1 1398 549 164 55 0 chr3 106631218 106631328 -52968455 + L1_Mur3 LINE L1 4703 4818 -1062 1 1398 576 269 104 9 chr3 106631321 106631542 -52968241 + Lx7 LINE L1 7018 7259 -437 1 1398 1166 105 12 0 chr3 106631596 106631768 -52968015 - L1_Mus3 LINE L1 -7 6631 6458 1 1398 305 252 91 0 chr3 106631770 106631869 -52967914 + Lx7 LINE L1 7247 7354 -342 1 1398 1857 107 3 3 chr3 106631927 106632219 -52967564 - MusHAL1 LINE L1 -960 1752 1461 1 1398 3196 154 113 77 chr3 106632225 106632811 -52966972 - RMER6-int LTR ERVK 0 3177 2525 1 1398 291 226 0 16 chr3 106632811 106632874 -52966909 - LSU-rRNA_Hsa rRNA rRNA -3195 1840 1779 1 1398 3196 154 113 77 chr3 106632874 106633097 -52966686 - RMER6-int LTR ERVK 0 2524 2274 1 1398 1300 251 82 91 chr3 106633105 106633534 -52966249 + RLTR23 LTR ERV1 6 430 0 1 1398 289 103 0 0 chr3 106634511 106634550 -52965233 - ORR1A1 LTR MaLR -2 324 286 1 1398 539 207 0 0 chr3 106634549 106634660 -52965123 - ORR1A1 LTR MaLR -235 111 1 1 1398 344 364 42 12 chr3 106634714 106635048 -52964735 + RLTR6-int LTR ERV1 1312 1655 -6123 1 1398 275 194 40 27 chr3 106635053 106635127 -52964656 + RLTR4_MM-int LTR ERV1 5483 5557 -2044 1 1398 591 308 39 39 chr3 106636585 106636973 -52962810 + RLTR6-int LTR ERV1 7325 7712 -66 1 1398 1361 203 94 106 chr3 106637028 106637090 -52962693 + RLTR23 LTR ERV1 1 57 -373 1 1398 893 87 29 0 chr3 106637090 106637228 -52962555 + L1_Mus3 LINE L1 6483 6624 -14 1 1398 324 0 0 0 chr3 106637228 106637264 -52962519 + (CAGA)n Simple_repeat Simple_repeat 2 37 0 1 1398 1361 203 94 106 chr3 106637264 106637635 -52962148 + RLTR23 LTR ERV1 58 429 -1 1 1398 24 53 0 0 chr3 106637659 106637697 -52962086 + AT_rich Low_complexity Low_complexity 1 38 0 1 1398 882 256 84 0 chr3 106638092 106638354 -52961429 - Lx2A1 LINE L1 -3 7047 6764 1 1398 2121 153 25 3 chr3 106638322 106638731 -52961052 - Lx2A1 LINE L1 -1182 5826 5405 1 1398 949 222 22 0 chr3 106639039 106639264 -52960519 + L1VL4 LINE L1 893 1122 -5535 1 1398 2314 171 0 0 chr3 106639258 106639674 -52960109 + L1Md_F2 LINE L1 151 566 -6050 1 1398 26687 82 18 24 chr3 106639674 106643813 -52955970 + L1Md_F2 LINE L1 1474 5586 -297 1 1398 7470 70 5 4 chr3 106643813 106644796 -52954987 + L1Md_F2 LINE L1 5587 6570 -12 1 1398 1009 204 90 5 chr3 106644804 106645177 -52954606 + L1VL4 LINE L1 1109 1508 -4369 1 1398 4139 181 31 20 chr3 106645298 106646244 -52953539 + Lx5 LINE L1 5520 6483 -567 1 1398 2366 199 16 27 chr3 106646244 106646694 -52953089 + RMER19C LTR ERVK 167 611 0 1 1398 2139 166 11 11 chr3 106646694 106647059 -52952724 - MTC-int LTR MaLR -783 475 111 1 1398 22 0 0 0 chr3 106647059 106647081 -52952702 + AT_rich Low_complexity Low_complexity 1 22 0 1 1398 10399 160 38 14 chr3 106647804 106648942 -52950841 + L1_Mur2 LINE L1 922 2064 -3813 1 1398 336 24 0 0 chr3 106648942 106648983 -52950800 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 1398 10399 164 45 17 chr3 106648983 106650393 -52949390 + L1_Mur2 LINE L1 2065 3537 -2340 1 1398 5362 137 7 2 chr3 106650381 106650970 -52948813 - Lx2A1 LINE L1 -556 5327 4737 1 1398 288 0 0 0 chr3 106650970 106651002 -52948781 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 1 1398 5362 137 7 2 chr3 106651002 106651321 -52948462 - Lx2A1 LINE L1 -1147 4736 4416 1 1398 7126 68 19 0 chr3 106651324 106652558 -52947225 + L1_Mus1 LINE L1 5309 6566 -1 1 1398 5324 144 52 8 chr3 106652592 106653585 -52946198 + Lx5 LINE L1 3542 4578 -1299 1 1398 1438 152 8 8 chr3 106653586 106653838 -52945945 + L1VL1 LINE L1 15 266 -6156 1 1398 1300 140 13 13 chr3 106653838 106654063 -52945720 + L1Md_F LINE L1 383 607 -5912 1 1398 228 241 146 89 chr3 106654063 106654186 -52945597 + MLT1F-int LTR MaLR 929 1058 -431 1 1398 10269 93 4 37 chr3 106654191 106656219 -52943564 + L1Md_F3 LINE L1 857 2805 -3078 1 1398 30565 79 1 6 chr3 106656220 106661498 -52938285 + L1Md_F2 LINE L1 242 5588 -298 1 1398 8003 55 1 0 chr3 106661501 106662496 -52937287 + L1Md_F2 LINE L1 5590 6585 0 1 1398 15188 75 2 1 chr3 106662496 106664628 -52935155 + L1Md_F3 LINE L1 3452 5586 -297 1 1398 8095 47 2 2 chr3 106664628 106665625 -52934158 + L1Md_F3 LINE L1 5587 6583 -1 1 1398 7056 79 1 0 chr3 106665625 106666610 -52933173 + L1Md_F2 LINE L1 4601 5586 -297 1 1398 7718 81 4 21 chr3 106666610 106667618 -52932165 + L1Md_F2 LINE L1 5587 6577 -5 1 1398 4682 126 17 0 chr3 106667621 106668281 -52931502 - Lx LINE L1 -3 6651 5981 1 1398 9736 18 0 0 chr3 106668281 106669377 -52930406 + L1Md_A LINE L1 4491 5586 -297 1 1398 8904 36 0 1 chr3 106669377 106670374 -52929409 + L1Md_A LINE L1 5587 6582 0 1 1398 2570 78 3 3 chr3 106670377 106670711 -52929072 - Lx LINE L1 -657 5997 5664 1 1398 7371 193 31 18 chr3 106670711 106671955 -52927828 + Lx5 LINE L1 4586 5848 -1202 1 1398 1647 118 210 18 chr3 106671955 106672231 -52927552 + ORR1A4 LTR MaLR 1 329 0 1 1398 7371 190 41 15 chr3 106672231 106673390 -52926393 + Lx5 LINE L1 5849 7050 0 1 1398 3315 237 19 45 chr3 106673406 106674183 -52925600 - Lx5 LINE L1 -5 7045 6289 1 1398 2691 58 64 0 chr3 106674173 106674518 -52925265 + L1_Mus1 LINE L1 5986 6352 -215 1 1398 3371 201 40 4 chr3 106674515 106675585 -52924198 - Lx5 LINE L1 -750 6300 5189 1 1398 701 149 21 56 chr3 106675588 106675730 -52924053 - ORR1A4-int LTR MaLR -1104 154 18 1 1398 956 191 85 88 chr3 106675730 106676058 -52923725 - ORR1A4 LTR MaLR 0 329 3 1 1398 518 269 11 101 chr3 106676109 106676287 -52923496 + RMER15-int LTR ERVL 4828 4989 -10 1 1398 230 308 67 107 chr3 106676289 106676438 -52923345 + RMER15 LTR ERVL 19 161 -414 1 1398 330 213 60 40 chr3 106676436 106676536 -52923247 - ORR1A4-int LTR MaLR -38 1925 1844 1 1398 3574 127 42 96 chr3 106677112 106677840 -52921943 - RLTR13D6 LTR ERVK -8 1106 221 1 1398 1160 128 15 25 chr3 106677840 106678040 -52921743 + L1Md_A LINE L1 6373 6570 -12 1 1398 3574 234 95 93 chr3 106678040 106678409 -52921374 - RLTR13D6 LTR ERVK -742 372 1 1 1398 350 356 0 8 chr3 106678525 106678655 -52921128 + MIRb SINE MIR 120 248 -20 2 1398 5485 156 30 31 chr3 106680015 106680956 -52918827 - Lx3C LINE L1 -9 6967 6028 2 1398 663 296 85 60 chr3 106680984 106681315 -52918468 - Lx8 LINE L1 0 7473 7135 2 1398 3324 9 0 6 chr3 106682071 106682419 -52917364 - ORR1A0 LTR MaLR 0 346 1 2 1398 374 243 124 7 chr3 106682647 106682784 -52916999 - L1M5 LINE L1 -423 5756 5604 2 1398 227 54 27 0 chr3 106682794 106682831 -52916952 + (TAAAAA)n Simple_repeat Simple_repeat 1 38 0 2 1398 22 35 0 0 chr3 106682971 106683000 -52916783 + AT_rich Low_complexity Low_complexity 1 29 0 2 1398 1248 152 70 13 chr3 106683363 106683590 -52916193 + Lx4A LINE L1 6817 7056 -2 2 1398 645 154 62 56 chr3 106683759 106683903 -52915880 + ORR1C2 LTR MaLR 1 145 -233 2 1398 2542 173 25 2 chr3 106683914 106684360 -52915423 + Lx4B LINE L1 6314 6769 -289 2 1398 864 220 82 26 chr3 106684375 106684608 -52915175 + Lx5 LINE L1 6802 7047 -3 2 1398 193 96 0 71 chr3 106684626 106684682 -52915101 + A-rich Low_complexity Low_complexity 2 53 0 2 1398 1001 178 23 86 chr3 106684682 106684903 -52914880 + ORR1C2 LTR MaLR 161 367 -17 2 1398 2870 210 74 39 chr3 106685148 106685823 -52913960 - RMER1C Other Other -1 1341 643 2 1398 390 311 42 6 chr3 106686032 106686200 -52913583 - Lx8 LINE L1 -2 7471 7298 2 1398 1069 190 74 17 chr3 106686201 106686291 -52913492 - RLTR20C LTR ERVK 0 534 446 2 1398 378 0 0 0 chr3 106686291 106686333 -52913450 + (CA)n Simple_repeat Simple_repeat 2 43 0 2 1398 1069 202 51 24 chr3 106686333 106686653 -52913130 - RLTR20C LTR ERVK -89 445 35 2 1398 916 292 99 33 chr3 106686669 106686810 -52912973 - Lx8 LINE L1 -173 7300 7134 2 1398 769 100 112 21 chr3 106686810 106686953 -52912830 - L1_Mus3 LINE L1 0 6638 6483 2 1398 916 292 99 33 chr3 106686953 106687144 -52912639 - Lx8 LINE L1 -340 7133 6947 2 1398 7000 52 57 14 chr3 106687814 106688690 -52911093 + L1Md_F2 LINE L1 5664 6577 -5 2 1398 6467 80 1 2 chr3 106688888 106689698 -52910085 - L1_Mus4 LINE L1 -1 6635 5827 2 174 35301 73 3 5 chr3 106689745 106695960 -52903823 - L1Md_F2 LINE L1 -3 6582 285 2 1399 3661 95 0 2 chr3 106695955 106696442 -52903341 - L1_Mm LINE L1 -41 5842 5357 2 1399 9573 11 2 5 chr3 106696442 106698253 -52901530 - L1Md_T LINE L1 0 6582 4795 2 1399 1947 145 6 55 chr3 106698242 106698607 -52901176 - L1_Mur2 LINE L1 -515 5362 5016 2 1399 765 31 0 0 chr3 106698920 106699016 -52900767 + (TG)n Simple_repeat Simple_repeat 2 97 0 2 1399 345 197 42 0 chr3 106699019 106699090 -52900693 - B4A SINE B4 -36 256 183 2 1399 1223 22 0 0 chr3 106699415 106699554 -52900229 - L1_Mus2 LINE L1 -621 5945 5807 2 1399 4218 92 24 14 chr3 106699554 106700129 -52899654 + L1_Mus3 LINE L1 6058 6638 0 2 1399 1065 82 12 59 chr3 106700129 106700163 -52899620 - L1_Mus2 LINE L1 -830 5806 5781 2 1399 4304 158 34 3 chr3 106700331 106701061 -52898722 - Lx3C LINE L1 -26 6950 6198 2 1399 1444 114 25 4 chr3 106701050 106701288 -52898495 - MusHAL1 LINE L1 -2271 441 199 2 1399 3197 113 15 9 chr3 106701305 106701759 -52898024 - Lx2 LINE L1 0 6997 6541 2 1399 1235 93 0 0 chr3 106701759 106701921 -52897862 + MT2B2 LTR ERVL 343 504 -80 2 1399 2187 99 16 3 chr3 106701922 106702237 -52897546 + L1VL4 LINE L1 513 831 -5471 2 1399 2584 110 11 5 chr3 106702235 106702602 -52897181 - Lx2 LINE L1 -444 6553 6185 2 1399 326 369 25 0 chr3 106702681 106702803 -52896980 + MIR SINE MIR 5 129 -133 2 1399 4329 115 48 7 chr3 106703086 106703697 -52896086 + Lx3C LINE L1 6339 6974 -2 2 1399 24 32 0 0 chr3 106703698 106703729 -52896054 + AT_rich Low_complexity Low_complexity 1 31 0 2 1399 618 234 189 0 chr3 106703799 106704043 -52895740 - L1MA8 LINE L1 -1 6290 6001 2 1399 9000 49 11 1 chr3 106704424 106706211 -52893572 - L1Md_F2 LINE L1 0 6582 4784 2 1399 222 329 49 35 chr3 106707060 106707202 -52892581 + MIRm SINE MIR 13 156 -120 2 1399 3514 66 9 0 chr3 106708070 106708494 -52891289 + L1_Mus1 LINE L1 6140 6567 0 2 1399 375 23 0 0 chr3 106708548 106708592 -52891191 + (TG)n Simple_repeat Simple_repeat 1 44 0 2 1399 372 59 0 0 chr3 106709009 106709060 -52890723 + (TTTG)n Simple_repeat Simple_repeat 2 52 0 2 1399 1053 109 7 0 chr3 106709060 106709197 -52890586 - B1_Mus1 SINE Alu -10 138 1 2 1399 393 264 0 46 chr3 106709714 106709845 -52889938 - L1ME3 LINE L1 -71 6091 5967 2 1399 1744 132 7 0 chr3 106710202 106710474 -52889309 - Lx LINE L1 -615 6039 5766 2 1399 3806 113 47 28 chr3 106710474 106711048 -52888735 + Lx LINE L1 6068 6652 -2 2 1399 430 115 0 63 chr3 106711048 106711159 -52888624 + G-rich Low_complexity Low_complexity 5 108 0 2 1399 944 82 7 0 chr3 106711159 106711294 -52888489 + (GAA)n Simple_repeat Simple_repeat 3 138 0 2 1399 334 167 0 16 chr3 106711733 106711794 -52887989 - HAL1-3A_ME LINE L1 -824 2034 1975 2 1399 329 269 18 63 chr3 106712916 106713027 -52886756 - L1MB3 LINE L1 -191 5992 5887 2 1399 1160 42 24 6 chr3 106713336 106713503 -52886280 + (TAGA)n Simple_repeat Simple_repeat 1 170 0 2 1399 559 167 67 40 chr3 106714055 106714205 -52885578 + Lx4B LINE L1 6896 7049 -9 2 1399 214 322 67 45 chr3 106714243 106714445 -52885338 - MIRb SINE MIR -2 260 55 2 1399 267 284 0 0 chr3 106714759 106714847 -52884936 + (CAGAGA)n Simple_repeat Simple_repeat 2 89 0 2 1399 313 219 37 0 chr3 106714847 106714929 -52884854 + (ATGGTG)n Simple_repeat Simple_repeat 5 89 0 2 1399 405 0 0 0 chr3 106714953 106714998 -52884785 + (TAGA)n Simple_repeat Simple_repeat 4 48 0 2 1399 2766 66 33 0 chr3 106715011 106715346 -52884437 + ORR1A0 LTR MaLR 1 346 0 2 1399 3456 47 89 6 chr3 106715346 106715838 -52883945 + ORR1A0-int LTR MaLR 1 533 -1259 2 1399 2712 65 3 12 chr3 106715838 106716179 -52883604 + L1Md_F2 LINE L1 6232 6569 -13 2 1399 11681 129 8 7 chr3 106716192 106719052 -52880731 - Lx4A LINE L1 -4 6996 4136 2 1399 5744 162 57 25 chr3 106719987 106721219 -52878564 + L1_Mur2 LINE L1 476 1814 -4063 2 1399 279 0 0 0 chr3 106721219 106721250 -52878533 + (CA)n Simple_repeat Simple_repeat 2 32 0 2 1399 387 0 0 0 chr3 106721257 106721300 -52878483 + (GA)n Simple_repeat Simple_repeat 2 44 0 2 1399 5744 116 33 25 chr3 106721300 106721535 -52878248 + L1_Mur2 LINE L1 1838 2062 -3815 2 1399 246 62 0 0 chr3 106721535 106721567 -52878216 + (CCA)n Simple_repeat Simple_repeat 1 32 0 2 1399 5744 116 33 25 chr3 106721567 106721721 -52878062 + L1_Mur2 LINE L1 2063 2214 -3663 2 1399 12122 122 40 10 chr3 106721720 106723141 -52876642 + L1VL2 LINE L1 66 1524 -2091 2 1399 5172 47 2 8 chr3 106723141 106723784 -52875999 + L1Md_F2 LINE L1 5942 6580 -2 2 1399 12122 105 8 20 chr3 106723784 106724839 -52874944 + L1VL2 LINE L1 1525 2570 -1045 2 1399 537 58 0 0 chr3 106724839 106724908 -52874875 + (GA)n Simple_repeat Simple_repeat 2 70 0 2 1399 2977 57 8 18 chr3 106724918 106725313 -52874470 - L1Md_F3 LINE L1 -3 6581 6191 2 1399 12122 105 8 20 chr3 106725313 106725686 -52874097 + L1VL2 LINE L1 2581 2960 -655 2 1399 35185 31 3 7 chr3 106725687 106731055 -52868728 + L1Md_T LINE L1 244 5586 -297 2 1399 8481 32 0 0 chr3 106731055 106732049 -52867734 + L1Md_T LINE L1 5587 6580 -2 2 1399 15243 138 14 7 chr3 106732540 106735146 -52864637 + Lx LINE L1 3251 5869 -785 2 1399 183 42 0 0 chr3 106735146 106735170 -52864613 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2 1399 5778 129 51 36 chr3 106735170 106735920 -52863863 + Lx LINE L1 5870 6642 -12 2 1399 1026 101 0 0 chr3 106735920 106736069 -52863714 + (GAAA)n Simple_repeat Simple_repeat 3 151 0 2 1399 1782 66 43 0 chr3 106736079 106736336 -52863447 + L1_Mur2 LINE L1 2215 2482 -3395 2 1399 2321 197 80 75 chr3 106736342 106736930 -52862853 + RLTR25B LTR ERVK 7 597 -431 2 1399 286 192 0 19 chr3 106736903 106736956 -52862827 + MT2B LTR ERVL 202 253 -348 2 1399 243 246 33 0 chr3 106736904 106736965 -52862818 + B1_Mus2 SINE Alu 46 108 -39 2 1399 232 226 0 0 chr3 106738330 106738383 -52861400 + (CCCCAA)n Simple_repeat Simple_repeat 6 58 0 2 1399 340 247 46 3 chr3 106738886 106738987 -52860796 + PB1D10 SINE Alu 16 117 0 2 1399 988 237 34 4 chr3 106739012 106739275 -52860508 + L1M3 LINE L1 5479 5749 -434 2 1399 368 137 0 27 chr3 106739700 106739775 -52860008 + GA-rich Low_complexity Low_complexity 1 73 0 2 1399 1234 62 6 11 chr3 106739786 106739964 -52859819 + (GGA)n Simple_repeat Simple_repeat 2 178 0 2 1399 616 211 43 57 chr3 106740014 106740155 -52859628 - B1_Mur3 SINE Alu -5 144 6 2 1399 312 276 0 75 chr3 106740077 106740171 -52859612 - MT2B LTR ERVL -361 240 154 2 1399 450 0 0 0 chr3 106740406 106740456 -52859327 + (TC)n Simple_repeat Simple_repeat 2 51 0 2 1399 891 36 0 0 chr3 106740456 106740566 -52859217 + (TG)n Simple_repeat Simple_repeat 2 112 0 2 1399 3952 155 155 8 chr3 106740610 106741344 -52858439 + RMER21B LTR ERV1 1 842 0 2 1399 489 277 172 21 chr3 106743635 106743827 -52855956 - Tigger5 DNA MER2_type 0 2406 2186 2 1399 592 287 109 34 chr3 106743831 106744069 -52855714 - Tigger5 DNA MER2_type -2099 307 52 2 1399 429 167 0 0 chr3 106744156 106744234 -52855549 + (TA)n Simple_repeat Simple_repeat 2 79 0 2 1399 394 291 16 33 chr3 106744253 106744374 -52855409 + B4 SINE B4 2 120 -172 2 1399 435 38 0 0 chr3 106744543 106744596 -52855187 + (TTTG)n Simple_repeat Simple_repeat 4 56 0 2 1399 811 153 23 0 chr3 106744596 106744727 -52855056 - B1_Mur3 SINE Alu -14 135 2 2 1399 542 342 12 36 chr3 106745086 106745253 -52854530 - RSINE1 SINE B4 0 165 3 2 1399 348 320 101 78 chr3 106746286 106746554 -52853229 - L2c LINE L2 -14 3373 3100 2 1399 21 0 0 0 chr3 106746643 106746664 -52853119 + AT_rich Low_complexity Low_complexity 1 21 0 2 1399 779 369 41 6 chr3 106746795 106747114 -52852669 - L4 LINE RTE -523 1506 1177 2 1399 201 39 0 0 chr3 106748203 106748229 -52851554 + (TTTAG)n Simple_repeat Simple_repeat 1 26 0 2 1399 3002 29 0 0 chr3 106748230 106748580 -52851203 - L1Md_T LINE L1 -2 6580 6231 2 1399 898 104 80 15 chr3 106748892 106749019 -52850764 + B1_Mus1 SINE Alu 1 138 -10 2 1399 366 16 82 0 chr3 106749019 106749080 -52850703 + (CAAA)n Simple_repeat Simple_repeat 2 67 0 2 1399 277 341 23 12 chr3 106749417 106749503 -52850280 - MIR SINE MIR -175 87 1 2 1399 244 326 194 0 chr3 106750067 106750242 -52849541 - MIR SINE MIR -32 230 22 2 1399 1560 249 62 31 chr3 106750321 106750805 -52848978 - RMER5 LTR ERV1 -3 531 33 2 1399 367 247 34 67 chr3 106751001 106751179 -52848604 + L1MC LINE L1 3024 3195 -2951 2 1399 261 286 116 95 chr3 106751425 106751657 -52848126 + MLT1G1 LTR MaLR 341 577 -2 3 1399 622 336 71 11 chr3 106751676 106752055 -52847728 + L1M5 LINE L1 3265 3666 -2480 3 1399 360 0 0 0 chr3 106752077 106752117 -52847666 + (TG)n Simple_repeat Simple_repeat 2 41 0 3 1399 2740 307 64 25 chr3 106752126 106753271 -52846512 + Lx8 LINE L1 6273 7462 -11 3 1399 271 273 0 11 chr3 106753313 106753402 -52846381 + L1MC LINE L1 3677 3764 -2382 2 1399 371 312 53 40 chr3 106753563 106753713 -52846070 + MTEa LTR MaLR 19 170 -209 3 1399 8481 140 20 25 chr3 106753804 106756517 -52843266 + Lx2B LINE L1 4285 6986 -14 3 1399 469 286 135 0 chr3 106756510 106756814 -52842969 + L1M5 LINE L1 4348 4692 -1454 3 1399 270 0 0 0 chr3 106756834 106756864 -52842919 + (TC)n Simple_repeat Simple_repeat 2 31 0 3 1399 207 0 0 0 chr3 106756865 106756888 -52842895 + (TG)n Simple_repeat Simple_repeat 2 24 0 3 1399 360 224 0 0 chr3 106757126 106757193 -52842590 - MER5A1 DNA MER1_type -34 132 66 3 1399 183 80 0 0 chr3 106757240 106757265 -52842518 + (TCTG)n Simple_repeat Simple_repeat 4 28 0 3 1399 678 181 21 42 chr3 106757265 106757400 -52842383 - B1F2 SINE Alu -8 141 10 3 1399 219 290 128 18 chr3 106758148 106758257 -52841526 - L2c LINE L2 -5 3382 3262 3 1399 883 70 101 0 chr3 106759218 106759347 -52840436 + B1_Mm SINE Alu 6 147 0 3 1399 350 320 88 0 chr3 106759469 106759594 -52840189 - B1F SINE Alu -13 136 1 3 1399 915 130 0 0 chr3 106759606 106759752 -52840031 + (GAAA)n Simple_repeat Simple_repeat 3 148 0 3 1399 204 385 122 19 chr3 106761656 106761918 -52837865 + L2c LINE L2 2911 3199 -188 3 1399 252 242 0 31 chr3 106762049 106762113 -52837670 - MLT1B LTR MaLR -46 344 283 3 1399 567 259 44 48 chr3 106762236 106762484 -52837299 - L1MA5 LINE L1 -6 6294 6048 3 1399 698 264 7 0 chr3 106762491 106762635 -52837148 - B1_Mur1 SINE Alu -3 146 2 3 1399 1590 70 0 14 chr3 106762691 106762907 -52836876 - L1_Mus1 LINE L1 0 6567 6355 3 1399 2233 60 0 0 chr3 106762907 106763191 -52836592 + L1_Mus1 LINE L1 6080 6363 -204 3 1399 1278 76 81 5 chr3 106764747 106764958 -52834825 + L1_Mur2 LINE L1 4229 4455 -1422 3 1399 420 20 0 0 chr3 106766355 106766404 -52833379 + (TA)n Simple_repeat Simple_repeat 2 50 0 3 1399 358 338 94 19 chr3 106767499 106767659 -52832124 + MER5B DNA MER1_type 1 172 -6 3 1399 511 264 22 74 chr3 106767698 106767833 -52831950 - RSINE1 SINE B4 -35 130 3 3 1399 3304 51 2 50 chr3 106768588 106769044 -52830739 + L1Md_F2 LINE L1 6148 6581 -1 3 1399 519 171 0 0 chr3 106769104 106769209 -52830574 + (CA)n Simple_repeat Simple_repeat 1 105 0 3 1399 628 327 82 64 chr3 106769743 106770148 -52829635 - MLT1C LTR MaLR -2 465 54 3 1399 24 53 0 0 chr3 106771274 106771312 -52828471 + AT_rich Low_complexity Low_complexity 1 38 0 3 1399 307 327 0 0 chr3 106771321 106771422 -52828361 - MIR SINE MIR -43 219 119 3 1399 22 35 0 0 chr3 106771957 106771986 -52827797 + AT_rich Low_complexity Low_complexity 1 29 0 3 1399 1275 238 237 20 chr3 106772007 106772458 -52827325 - RMER15 LTR ERVL 0 575 27 3 1399 833 265 152 29 chr3 106772617 106772893 -52826890 + MTEa LTR MaLR 67 376 -3 3 1399 1861 132 32 52 chr3 106773083 106773427 -52826356 - Lx4A LINE L1 0 7058 6722 3 1399 3513 75 17 15 chr3 106773997 106774472 -52825311 + L1_Mus1 LINE L1 6092 6567 0 3 1399 288 0 0 0 chr3 106774533 106774565 -52825218 + (TG)n Simple_repeat Simple_repeat 2 33 0 3 1399 21 0 0 0 chr3 106776480 106776501 -52823282 + AT_rich Low_complexity Low_complexity 1 21 0 3 1399 1367 154 27 0 chr3 106777678 106777898 -52821885 - URR1A DNA MER1_type 0 226 1 3 1399 278 307 13 0 chr3 106778220 106778295 -52821488 + ID4_ SINE ID 1 76 -7 3 1399 198 0 0 0 chr3 106778301 106778323 -52821460 + (GAAAA)n Simple_repeat Simple_repeat 2 23 0 3 1399 1157 103 6 0 chr3 106778324 106778499 -52821284 + (GGAAA)n Simple_repeat Simple_repeat 5 180 0 3 1399 320 336 16 39 chr3 106779433 106779560 -52820223 + MIRb SINE MIR 26 149 -119 3 1399 3600 249 59 52 chr3 106779668 106780187 -52819596 + Lx8 LINE L1 6427 6954 -519 3 1399 369 75 0 0 chr3 106780187 106780240 -52819543 + (CA)n Simple_repeat Simple_repeat 2 54 0 3 1399 3600 249 59 52 chr3 106780240 106780758 -52819025 + Lx8 LINE L1 6955 7471 -2 3 1399 225 94 0 0 chr3 106781249 106781281 -52818502 + (TCC)n Simple_repeat Simple_repeat 3 34 0 3 1399 252 86 0 0 chr3 106782022 106782057 -52817726 + (GAAA)n Simple_repeat Simple_repeat 2 36 0 3 1399 554 320 114 28 chr3 106782134 106782564 -52817219 - MLT1C LTR MaLR 0 467 1 3 1399 499 369 40 10 chr3 106782855 106783055 -52816728 - LTR16C LTR ERVL -155 334 129 3 1399 1616 246 59 13 chr3 106783375 106783762 -52816021 + MTD LTR MaLR 1 405 -14 3 1399 246 327 100 47 chr3 106784666 106784836 -52814947 + MIRc SINE MIR 50 228 -40 3 1399 984 18 0 0 chr3 106784844 106784958 -52814825 + (TC)n Simple_repeat Simple_repeat 1 114 0 3 1399 432 302 112 0 chr3 106785043 106785275 -52814508 + L2 LINE L2 1805 2062 -1357 3 1399 636 279 27 21 chr3 106785553 106785740 -52814043 + RMER15 LTR ERVL 345 532 -43 3 1399 1811 275 128 35 chr3 106786699 106787238 -52812545 - MER45B DNA Tip100 0 1040 437 3 1399 216 0 0 0 chr3 106787238 106787262 -52812521 + (TG)n Simple_repeat Simple_repeat 1 24 0 3 1399 1811 275 128 35 chr3 106787262 106787487 -52812296 - MER45B DNA Tip100 -604 436 207 3 1399 203 305 13 54 chr3 106787803 106787952 -52811831 + (CA)n Simple_repeat Simple_repeat 2 144 0 3 1399 495 281 18 0 chr3 106788936 106789050 -52810733 - PB1D10 SINE Alu 0 117 2 3 1399 876 295 40 8 chr3 106790657 106790910 -52808873 + RMER15 LTR ERVL 298 558 -17 3 1399 243 0 0 0 chr3 106791040 106791067 -52808716 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3 1399 1394 113 0 15 chr3 106791210 106791407 -52808376 + B2_Mm2 SINE B2 1 194 -1 3 1399 416 19 0 19 chr3 106792421 106792475 -52807308 + (TG)n Simple_repeat Simple_repeat 2 54 0 3 1399 312 293 0 26 chr3 106792486 106792563 -52807220 - B4A SINE B4 0 292 218 3 1399 1141 259 91 31 chr3 106792638 106792988 -52806795 - Lx8 LINE L1 -75 7398 7028 3 1399 814 123 138 17 chr3 106793005 106793179 -52806604 - Lx5 LINE L1 0 7050 6856 3 1399 544 230 0 8 chr3 106793177 106793304 -52806479 - Lx8 LINE L1 -451 7022 6897 3 1399 229 306 120 20 chr3 106794005 106794105 -52805678 + MIR SINE MIR 57 166 -96 3 1399 2169 122 27 33 chr3 106794112 106794443 -52805340 - ORR1A4 LTR MaLR 0 329 1 3 1399 225 265 0 0 chr3 106795440 106795489 -52804294 + (TGGA)n Simple_repeat Simple_repeat 1 49 0 3 1399 4110 148 57 13 chr3 106797196 106797235 -52802548 + Lx4A LINE L1 6333 6371 -687 3 1399 456 67 0 0 chr3 106797235 106797295 -52802488 + (TAAA)n Simple_repeat Simple_repeat 2 61 0 3 1399 4110 148 57 13 chr3 106797295 106797942 -52801841 + Lx4A LINE L1 6372 7048 -10 3 1399 334 0 21 21 chr3 106798137 106798184 -52801599 + (TTTTG)n Simple_repeat Simple_repeat 5 51 0 3 1399 328 331 57 31 chr3 106798535 106798694 -52801089 - L2 LINE L2 -497 2922 2760 3 1399 207 0 0 0 chr3 106798882 106798905 -52800878 + (CAAA)n Simple_repeat Simple_repeat 4 26 0 3 1399 269 331 176 6 chr3 106799016 106799192 -52800591 - MIR SINE MIR -44 218 13 3 1399 2234 64 21 0 chr3 106800031 106800314 -52799469 + L1Md_F3 LINE L1 6296 6584 0 3 1399 731 276 84 67 chr3 106800438 106800536 -52799247 + ORR1E LTR MaLR 9 106 -253 3 1399 1995 191 27 11 chr3 106800536 106800912 -52798871 + RLTR14 LTR ERV1 1 382 0 3 1399 731 276 84 67 chr3 106800912 106801158 -52798625 + ORR1E LTR MaLR 107 359 0 3 1399 471 256 80 0 chr3 106801159 106801284 -52798499 + MLT1B LTR MaLR 42 176 -214 3 1399 283 314 37 19 chr3 106801324 106801431 -52798352 + MLT1B LTR MaLR 253 361 -29 3 1399 185 0 0 39 chr3 106801861 106801887 -52797896 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 3 1399 221 351 135 32 chr3 106802583 106802739 -52797044 - MIRc SINE MIR -94 174 3 3 1399 207 354 137 18 chr3 106802787 106803014 -52796769 + L4 LINE RTE 1593 1846 -183 3 1399 246 243 91 39 chr3 106803160 106803237 -52796546 - MIR SINE MIR -3 259 179 3 1399 313 302 188 22 chr3 106803352 106803623 -52796160 + L2a LINE L2 2693 3008 -411 3 1399 217 347 42 10 chr3 106803854 106803950 -52795833 + L2a LINE L2 3321 3419 -7 3 1399 843 306 67 46 chr3 106803992 106804276 -52795507 - B4 SINE B4 -2 290 1 3 1399 273 364 40 40 chr3 106804651 106804800 -52794983 - ORR1D2 LTR MaLR -214 156 8 3 1399 396 0 0 0 chr3 106806365 106806409 -52793374 + (TTTG)n Simple_repeat Simple_repeat 2 45 0 3 1399 1250 29 0 0 chr3 106806409 106806546 -52793237 - B1_Mus1 SINE Alu -11 137 1 3 1399 646 152 8 8 chr3 106807195 106807321 -52792462 + CT-rich Low_complexity Low_complexity 1 126 0 3 1399 226 191 62 21 chr3 106807497 106807545 -52792238 + ID4 SINE ID 20 69 -14 3 1399 306 0 0 0 chr3 106807545 106807579 -52792204 + (CA)n Simple_repeat Simple_repeat 2 35 0 3 1399 1003 225 95 4 chr3 106807705 106807937 -52791846 - MTD LTR MaLR -62 357 105 3 1399 1096 217 0 0 chr3 106807943 106808132 -52791651 + B3 SINE B2 3 191 -25 3 1399 444 197 0 0 chr3 106808161 106808237 -52791546 - MTD LTR MaLR -299 120 45 3 1399 1167 128 25 30 chr3 106809091 106809293 -52790490 - Lx2 LINE L1 0 6997 6797 3 1399 708 272 42 14 chr3 106809696 106809912 -52789871 + Tigger7 DNA MER2_type 2270 2491 0 3 1399 1165 284 68 62 chr3 106809912 106810543 -52789240 - L1MA9 LINE L1 -225 6087 5453 3 1399 242 284 149 0 chr3 106810672 106810689 -52789094 - ID_B1 SINE B4 -3 221 146 3 1399 248 286 0 0 chr3 106810689 106810738 -52789045 - B1F SINE Alu -33 116 68 3 1399 271 283 10 61 chr3 106810790 106810876 -52788907 - B1F2 SINE Alu -1 148 67 3 1399 1411 96 18 31 chr3 106810876 106811101 -52788682 + Lx2A1 LINE L1 6787 7008 0 3 1399 271 283 10 61 chr3 106811101 106811112 -52788671 - B1F2 SINE Alu -83 66 56 3 1399 405 204 20 30 chr3 106811121 106811222 -52788561 - L1MA9 LINE L1 -861 5439 5340 3 1399 1175 283 33 12 chr3 106811378 106811804 -52787979 - L1MA9 LINE L1 -1098 5042 4608 3 1399 213 330 21 21 chr3 106812131 106812224 -52787559 - L4 LINE RTE -196 1833 1741 3 1399 527 81 12 0 chr3 106812225 106812311 -52787472 + (GA)n Simple_repeat Simple_repeat 2 88 0 3 1399 289 328 209 0 chr3 106812457 106812658 -52787125 - MIRb SINE MIR -6 262 20 4 1399 2704 76 5 33 chr3 106813206 106813573 -52786210 + L1Md_F2 LINE L1 6207 6563 -19 4 1399 8179 24 6 4 chr3 106813618 106814569 -52785214 - L1Md_T LINE L1 -505 5378 4426 4 1399 1969 22 0 0 chr3 106814566 106814788 -52784995 + L1Md_T LINE L1 5365 5586 -297 4 1399 9058 27 0 0 chr3 106814788 106815773 -52784010 + L1Md_T LINE L1 5587 6571 -11 4 1399 571 308 0 7 chr3 106816370 106816514 -52783269 + B1F1 SINE Alu 6 148 -1 4 1399 360 0 0 0 chr3 106817039 106817079 -52782704 + (TA)n Simple_repeat Simple_repeat 1 40 0 4 1399 186 394 0 0 chr3 106818070 106818136 -52781647 + MER5B DNA MER1_type 110 175 -3 4 1399 7282 65 38 6 chr3 106818155 106819086 -52780697 + Lx3_Mus LINE L1 6050 7009 0 4 1399 30 0 0 0 chr3 106819086 106819116 -52780667 + AT_rich Low_complexity Low_complexity 1 30 0 4 1399 216 67 0 0 chr3 106819116 106819146 -52780637 + (A)n Simple_repeat Simple_repeat 1 30 0 4 1399 374 279 17 43 chr3 106820558 106820674 -52779109 + RMER15 LTR ERVL 421 533 -42 4 1399 348 64 0 0 chr3 106820915 106820962 -52778821 + (TG)n Simple_repeat Simple_repeat 2 48 0 4 1399 206 191 21 21 chr3 106820962 106821010 -52778773 + (CATATA)n Simple_repeat Simple_repeat 4 51 0 4 1399 414 0 0 0 chr3 106821607 106821653 -52778130 + (TG)n Simple_repeat Simple_repeat 2 47 0 4 174 639 302 27 70 chr3 106823580 106823879 -52775904 + B4A SINE B4 5 290 -2 4 1400 24 0 0 0 chr3 106825417 106825441 -52774342 + AT_rich Low_complexity Low_complexity 1 24 0 4 1400 2330 311 46 17 chr3 106826851 106827659 -52772124 - Lx9 LINE L1 -429 7215 6385 4 1400 751 245 84 20 chr3 106827829 106828098 -52771685 - Lx9 LINE L1 -1634 6010 5722 4 1400 7826 59 7 20 chr3 106828103 106829458 -52770325 - L1_Mus1 LINE L1 0 6567 5233 4 1400 2601 225 111 32 chr3 106829446 106830264 -52769519 - L1_Rod LINE L1 -121 5726 4844 4 1400 370 273 13 0 chr3 106830369 106830446 -52769337 - ID4 SINE ID -3 80 3 4 1400 422 250 55 18 chr3 106830465 106830575 -52769208 - PB1D10 SINE Alu -3 114 1 4 1400 222 267 33 56 chr3 106831016 106831113 -52768670 + MIRc SINE MIR 59 153 -55 4 1400 225 156 22 22 chr3 106831132 106831178 -52768605 - L2c LINE L2 -4 3383 3338 4 1400 300 273 81 9 chr3 106831443 106831554 -52768229 - MIRb SINE MIR -58 210 92 4 1400 992 156 0 6 chr3 106832128 106832309 -52767474 + GA-rich Low_complexity Low_complexity 1 180 0 4 1400 288 0 0 0 chr3 106832309 106832341 -52767442 + (GAAA)n Simple_repeat Simple_repeat 1 32 0 4 1400 218 343 109 27 chr3 106835107 106835254 -52764529 - L2a LINE L2 -1 3425 3267 4 1400 735 44 0 0 chr3 106835505 106835596 -52764187 + (GA)n Simple_repeat Simple_repeat 2 92 0 4 1400 23 54 0 0 chr3 106835701 106835738 -52764045 + AT_rich Low_complexity Low_complexity 1 37 0 4 1400 254 353 90 37 chr3 106835749 106836017 -52763766 - L2a LINE L2 -146 3280 2999 4 1400 224 263 53 20 chr3 106836533 106836631 -52763152 + MIR SINE MIR 113 225 -43 4 1400 314 359 17 40 chr3 106836677 106836851 -52762932 - LFSINE_Vert SINE SINE -246 213 44 4 1400 272 328 137 9 chr3 106836907 106837065 -52762718 + MIR3 SINE MIR 6 181 -27 4 1400 258 32 0 0 chr3 106837554 106837585 -52762198 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 4 1400 22 0 0 0 chr3 106839002 106839024 -52760759 + GC_rich Low_complexity Low_complexity 1 22 0 4 1400 224 230 13 26 chr3 106839378 106839454 -52760329 + (CGG)n Simple_repeat Simple_repeat 2 76 0 4 1400 298 262 102 47 chr3 106843690 106843818 -52755965 + MIR SINE MIR 63 197 -65 4 1400 299 360 24 12 chr3 106843941 106844107 -52755676 - MIRc SINE MIR -85 183 16 4 1400 378 0 0 0 chr3 106845564 106845606 -52754177 + (TG)n Simple_repeat Simple_repeat 2 43 0 4 1400 186 71 0 0 chr3 106846523 106846551 -52753232 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 4 1400 855 139 66 0 chr3 106846574 106846711 -52753072 - B1_Mus1 SINE Alu -1 147 2 4 1400 1959 231 48 9 chr3 106846721 106847183 -52752600 - Lx6 LINE L1 -26 7434 6955 4 1400 189 94 0 0 chr3 106847227 106847259 -52752524 + (TTGG)n Simple_repeat Simple_repeat 4 35 0 4 1400 2564 70 6 3 chr3 106847299 106847616 -52752167 + L1_Mus3 LINE L1 6314 6631 -7 4 1400 669 294 0 70 chr3 106848294 106848466 -52751317 - RSINE1 SINE B4 0 165 6 4 1400 258 32 0 0 chr3 106849394 106849425 -52750358 + (TG)n Simple_repeat Simple_repeat 1 31 0 4 1400 1238 283 18 7 chr3 106849479 106849764 -52750019 - B4 SINE B4 -4 288 1 4 1400 2572 85 17 19 chr3 106849813 106850173 -52749610 - RLTR15 LTR ERVK 0 359 1 4 1400 228 325 0 12 chr3 106851225 106851306 -52748477 + CT-rich Low_complexity Low_complexity 5 84 0 4 1400 224 345 90 29 chr3 106853706 106853880 -52745903 + MIRm SINE MIR 19 198 -10 4 1400 222 37 0 0 chr3 106854072 106854099 -52745684 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 4 1400 234 306 55 62 chr3 106854321 106854507 -52745276 + MIRb SINE MIR 34 208 0 4 1400 24 0 0 0 chr3 106854759 106854783 -52745000 + AT_rich Low_complexity Low_complexity 1 24 0 4 1400 24 0 0 0 chr3 106856999 106857023 -52742760 + AT_rich Low_complexity Low_complexity 1 24 0 4 1400 2749 171 32 12 chr3 106857716 106858213 -52741570 - RMER1B Other Other 0 1066 560 4 1400 240 143 0 0 chr3 106858793 106858835 -52740948 + (GA)n Simple_repeat Simple_repeat 1 42 0 4 1400 2811 115 31 0 chr3 106858867 106859292 -52740491 - Lx2 LINE L1 -519 6478 6041 4 1400 3582 130 37 15 chr3 106859292 106859829 -52739954 + Lx2 LINE L1 6448 6996 -1 4 1400 1602 141 226 10 chr3 106860404 106860705 -52739078 + ORR1B2 LTR MaLR 2 367 0 4 1400 276 30 0 0 chr3 106861310 106861343 -52738440 + (CA)n Simple_repeat Simple_repeat 1 33 0 4 1400 305 298 88 32 chr3 106862821 106862946 -52736837 + L2c LINE L2 3251 3382 -5 4 1400 23 54 0 0 chr3 106863397 106863434 -52736349 + AT_rich Low_complexity Low_complexity 1 37 0 4 1400 713 235 99 12 chr3 106863507 106863679 -52736104 + ID_B1 SINE B4 35 221 -3 4 1400 1143 107 0 0 chr3 106863694 106863863 -52735920 + (GGAGA)n Simple_repeat Simple_repeat 3 171 0 4 1400 237 294 103 59 chr3 106863894 106864147 -52735636 + MER121 Unknown Unknown 48 311 -101 4 1400 1203 244 45 10 chr3 106864379 106864689 -52735094 + L1M2 LINE L1 5480 5800 -500 4 1400 1084 303 60 0 chr3 106866568 106866918 -52732865 + Lx8 LINE L1 6884 7254 -219 4 1400 2863 88 47 0 chr3 106866912 106867365 -52732418 - L1_Mus4 LINE L1 -715 5921 5453 4 1400 937 130 98 23 chr3 106867381 106867554 -52732229 + B2_Mm2 SINE B2 7 192 -3 4 1400 632 249 62 19 chr3 106867580 106867740 -52732043 + B3 SINE B2 6 172 -44 4 1400 764 286 121 8 chr3 106868028 106868285 -52731498 + B4A SINE B4 5 290 -2 4 1400 342 182 0 0 chr3 106869030 106869096 -52730687 + CT-rich Low_complexity Low_complexity 3 68 0 4 1400 216 0 0 0 chr3 106869632 106869656 -52730127 + (A)n Simple_repeat Simple_repeat 1 24 0 4 1400 22 0 0 0 chr3 106870272 106870294 -52729489 + AT_rich Low_complexity Low_complexity 1 22 0 4 1400 227 283 0 0 chr3 106870593 106870653 -52729130 + MLT1A1 LTR MaLR 66 125 -249 4 1400 983 154 61 15 chr3 106870796 106870994 -52728789 + Lx2A LINE L1 6770 6976 -32 4 1400 461 105 0 23 chr3 106870987 106871075 -52728708 + Lx2A LINE L1 6923 7008 0 4 1400 340 269 99 16 chr3 106871093 106871214 -52728569 + MLT1A1 LTR MaLR 270 400 -8 4 1400 541 188 30 35 chr3 106871455 106871617 -52728166 - B3 SINE B2 -15 178 30 4 1400 197 314 69 92 chr3 106871856 106871986 -52727797 + L2c LINE L2 3078 3204 -183 4 1400 226 317 98 24 chr3 106872680 106872803 -52726980 + MTEb LTR MaLR 6 137 -222 4 1400 590 153 9 0 chr3 106872806 106872917 -52726866 + CT-rich Low_complexity Low_complexity 2 113 0 4 1400 375 250 20 20 chr3 106873075 106873177 -52726606 + MTEb LTR MaLR 278 379 0 4 1400 465 312 109 0 chr3 106873686 106873888 -52725895 - MIR SINE MIR -34 228 5 4 1400 184 304 62 25 chr3 106875131 106875212 -52724571 + L2c LINE L2 3268 3351 -36 4 1400 4349 209 72 76 chr3 106876181 106877491 -52722292 + RMER1A Other Other 1 1056 -10 4 1400 293 350 69 78 chr3 106877948 106878165 -52721618 - Charlie8 DNA MER1_type -2201 227 13 4 1400 3480 50 2 2 chr3 106878263 106878663 -52721120 + MTB LTR MaLR 1 400 0 4 1400 24 0 0 0 chr3 106880484 106880508 -52719275 + AT_rich Low_complexity Low_complexity 1 24 0 4 1400 1814 161 66 15 chr3 106880516 106880851 -52718932 + ORR1B1 LTR MaLR 41 392 -2 4 1400 241 259 143 25 chr3 106882988 106883107 -52716676 + L2c LINE L2 3252 3384 -3 4 1400 580 36 24 12 chr3 106883108 106883191 -52716592 + (GGAA)n Simple_repeat Simple_repeat 4 87 0 4 1400 644 180 7 0 chr3 106883191 106883228 -52716555 + polypurine Low_complexity Low_complexity 3 40 0 4 1400 1443 45 0 0 chr3 106883228 106883407 -52716376 + (GGAGA)n Simple_repeat Simple_repeat 1 179 0 4 1400 644 180 7 0 chr3 106883407 106883508 -52716275 + polypurine Low_complexity Low_complexity 41 141 0 4 1400 2756 185 33 31 chr3 106885408 106885950 -52713833 + RMER15 LTR ERVL 31 573 -2 4 1400 338 303 36 18 chr3 106886417 106886528 -52713255 - MER5B DNA MER1_type -26 152 40 4 1400 717 45 0 0 chr3 106887452 106887541 -52712242 + (TAGA)n Simple_repeat Simple_repeat 4 92 0 4 1400 228 345 44 55 chr3 106888187 106888368 -52711415 - MIRb SINE MIR -88 180 2 4 1400 528 264 85 61 chr3 106888866 106889112 -52710671 - L1MC4a LINE L1 -1815 6067 5816 4 1400 23 0 0 0 chr3 106889112 106889135 -52710648 + AT_rich Low_complexity Low_complexity 1 23 0 4 1400 281 328 0 15 chr3 106889147 106889215 -52710568 - RSINE1 SINE B4 -6 159 93 4 1400 453 304 2 38 chr3 106889310 106889473 -52710310 - B4 SINE B4 -76 148 4 4 1400 1628 147 76 106 chr3 106889656 106890013 -52709770 - ORR1B1 LTR MaLR -8 386 41 4 1400 536 40 13 0 chr3 106890047 106890122 -52709661 + (TG)n Simple_repeat Simple_repeat 1 76 0 4 1400 663 281 108 25 chr3 106890426 106890762 -52709021 - MTEb LTR MaLR 0 379 16 5 1400 184 111 0 0 chr3 106890922 106890949 -52708834 + L3 LINE CR1 1245 1271 -3218 5 1400 475 352 48 30 chr3 106891647 106891978 -52707805 + Charlie19a DNA Charlie 1 337 -49 5 1400 513 0 0 0 chr3 106892978 106893035 -52706748 + (TG)n Simple_repeat Simple_repeat 1 57 0 5 1400 705 232 73 15 chr3 106893505 106893711 -52706072 - L2 LINE L2 -395 3024 2807 5 1400 193 296 43 54 chr3 106893839 106893932 -52705851 - L2 LINE L2 -845 2574 2483 5 1400 185 65 32 0 chr3 106894018 106894049 -52705734 + (CTTG)n Simple_repeat Simple_repeat 2 33 0 5 1400 653 259 0 7 chr3 106894053 106894201 -52705582 - B1F2 SINE Alu 0 149 3 5 1400 627 81 0 0 chr3 106895899 106895985 -52703798 + (GGGA)n Simple_repeat Simple_repeat 4 89 0 5 1400 231 340 27 74 chr3 106896383 106896532 -52703251 + MIRb SINE MIR 41 182 -86 5 1400 367 52 17 17 chr3 106896985 106897044 -52702739 + (TTTG)n Simple_repeat Simple_repeat 2 60 0 5 1400 233 227 145 90 chr3 106897792 106897937 -52701846 + MIRc SINE MIR 19 171 -37 5 1400 199 307 0 62 chr3 106898019 106898099 -52701684 - MIR3 SINE MIR -41 167 93 5 1400 264 302 73 41 chr3 106901273 106901523 -52698260 - L1MA10 LINE L1 -13 6321 5918 5 1400 231 356 59 0 chr3 106901891 106901992 -52697791 - MIRc SINE MIR -118 150 44 5 1400 339 160 0 0 chr3 106902241 106902316 -52697467 + (CA)n Simple_repeat Simple_repeat 2 76 0 5 1400 327 260 0 0 chr3 106902386 106902536 -52697247 + (CA)n Simple_repeat Simple_repeat 1 150 0 5 1400 233 319 122 32 chr3 106902566 106902754 -52697029 + MIRb SINE MIR 40 244 -24 5 1400 235 104 20 20 chr3 106904471 106904520 -52695263 + (CGCGG)n Simple_repeat Simple_repeat 4 52 0 5 1400 492 18 0 0 chr3 106909812 106909869 -52689914 + (TC)n Simple_repeat Simple_repeat 1 57 0 5 1400 533 129 11 0 chr3 106909977 106910070 -52689713 + (TA)n Simple_repeat Simple_repeat 2 95 0 5 1400 886 166 11 0 chr3 106910656 106910831 -52688952 + GA-rich Low_complexity Low_complexity 2 178 0 5 1400 324 0 0 0 chr3 106913610 106913646 -52686137 + (CA)n Simple_repeat Simple_repeat 1 36 0 5 1400 212 167 0 20 chr3 106915178 106915227 -52684556 + (TA)n Simple_repeat Simple_repeat 2 49 0 5 1400 237 136 45 0 chr3 106917134 106917200 -52682583 + (TA)n Simple_repeat Simple_repeat 1 69 0 5 1400 672 308 68 0 chr3 106918380 106918571 -52681212 + ID_B1 SINE B4 14 222 -2 5 1400 382 232 85 31 chr3 106919635 106919764 -52680019 + MIRb SINE MIR 61 196 -72 5 1400 762 271 65 11 chr3 106919882 106920143 -52679640 + B4A SINE B4 2 276 -16 5 1400 213 39 0 0 chr3 106920146 106920172 -52679611 + (TG)n Simple_repeat Simple_repeat 1 26 0 5 1400 264 375 16 55 chr3 106920209 106920336 -52679447 + Charlie4z DNA MER1_type 2 123 -44 5 1400 379 294 75 63 chr3 106921647 106921821 -52677962 - MIRb SINE MIR -23 245 70 5 1400 783 0 0 0 chr3 106923091 106923178 -52676605 + (GA)n Simple_repeat Simple_repeat 1 87 0 5 1400 435 345 41 6 chr3 106923279 106923448 -52676335 - MIRb SINE MIR -39 229 55 5 1400 218 271 89 56 chr3 106924114 106924204 -52675579 + MIRc SINE MIR 113 205 -63 5 1400 290 360 81 36 chr3 106924805 106925027 -52674756 - L2 LINE L2 -662 2757 2526 5 1400 1660 242 39 20 chr3 106925546 106925904 -52673879 - MTEb LTR MaLR 0 379 15 5 1400 2278 182 32 10 chr3 106927412 106927822 -52671961 + MTD LTR MaLR 1 419 0 5 1400 2978 233 95 108 chr3 106927822 106929020 -52670763 + MTD-int LTR MaLR 1 1183 -75 5 1400 1460 254 90 41 chr3 106929008 106929352 -52670431 + MTD LTR MaLR 10 374 -45 5 1400 539 271 121 35 chr3 106929352 106929551 -52670232 - B3 SINE B2 0 216 1 5 1400 1460 254 90 41 chr3 106929551 106929596 -52670187 + MTD LTR MaLR 375 418 -1 5 1400 491 269 137 21 chr3 106930827 106931017 -52668766 + L2a LINE L2 3214 3425 -1 5 1400 368 296 120 17 chr3 106931097 106931272 -52668511 + MIRb SINE MIR 22 214 -54 5 1400 370 281 79 15 chr3 106931565 106931739 -52668044 - MIR3 SINE MIR -3 205 19 5 1400 439 307 145 85 chr3 106932080 106932454 -52667329 + MLT1K LTR MaLR 8 405 -190 5 1400 447 35 0 0 chr3 106932454 106932511 -52667272 + (GA)n Simple_repeat Simple_repeat 2 58 0 5 1400 439 307 145 85 chr3 106932511 106932584 -52667199 + MLT1K LTR MaLR 406 482 -113 5 1400 225 108 0 0 chr3 106932852 106932889 -52666894 + (TTA)n Simple_repeat Simple_repeat 1 37 0 5 1400 314 297 195 0 chr3 106933061 106933189 -52666594 - MIRb SINE MIR -17 251 99 5 1400 355 333 112 13 chr3 106934807 106935087 -52664696 + L1MD LINE L1 4966 5274 -872 5 1400 2007 61 23 0 chr3 106935087 106935351 -52664432 - L1_Mus3 LINE L1 -5 6633 6364 5 1400 355 333 112 13 chr3 106935351 106935383 -52664400 + L1MD LINE L1 5275 5308 -838 5 1400 482 257 134 35 chr3 106935357 106935393 -52664390 + L1ME1 LINE L1 5340 5373 -867 5 1400 261 0 0 0 chr3 106935393 106935422 -52664361 + (TG)n Simple_repeat Simple_repeat 2 30 0 5 1400 1272 262 130 34 chr3 106935422 106936038 -52663745 + L1ME1 LINE L1 5373 6046 -133 5 1400 301 237 41 0 chr3 106936093 106936183 -52663600 + L1MA9 LINE L1 5844 5938 -362 5 1400 432 292 162 77 chr3 106936337 106936701 -52663082 + HAL1b LINE L1 612 1006 -1003 5 1400 531 0 0 0 chr3 106936846 106936905 -52662878 + (TGG)n Simple_repeat Simple_repeat 3 61 0 5 1400 709 123 0 19 chr3 106936925 106937033 -52662750 - B1_Mus2 SINE Alu 0 147 42 5 1400 295 92 0 58 chr3 106937035 106937104 -52662679 + CT-rich Low_complexity Low_complexity 4 68 0 5 1400 247 170 57 0 chr3 106937113 106937166 -52662617 - B1_Mur4 SINE Alu -94 56 1 5 1400 2040 117 48 87 chr3 106937400 106937793 -52661990 - RMER10B LTR ERVL -20 378 1 5 1400 234 325 132 19 chr3 106937793 106938010 -52661773 - L2a LINE L2 -329 3097 2857 5 1400 274 267 58 8 chr3 106938150 106938271 -52661512 - L1M2 LINE L1 -845 5298 5172 5 1400 233 241 190 11 chr3 106938288 106938388 -52661395 + L1MA9 LINE L1 6173 6290 -10 5 1400 310 309 48 8 chr3 106938423 106938547 -52661236 - L2 LINE L2 -706 2713 2585 5 1400 357 209 81 0 chr3 106938731 106938817 -52660966 + PB1D9 SINE Alu 28 120 0 5 1400 386 323 142 27 chr3 106938888 106939184 -52660599 + HAL1b LINE L1 1259 1588 -421 5 1400 3394 148 11 4 chr3 106939234 106939785 -52659998 - MT2B2 LTR ERVL -29 555 1 5 1400 269 53 0 0 chr3 106939785 106939823 -52659960 - MERVL-int LTR ERVL 0 5485 5448 5 1400 323 192 13 40 chr3 106939823 106939899 -52659884 - ORR1A3-int LTR MaLR -1323 640 567 5 1400 6554 165 28 4 chr3 106939905 106940979 -52658804 - MERVL_2A-int LTR ERVL -139 5622 4523 5 1400 495 309 18 98 chr3 106940979 106941306 -52658477 + HAL1b LINE L1 1670 1970 -39 5 1400 25 90 0 0 chr3 106941325 106941392 -52658391 + AT_rich Low_complexity Low_complexity 1 67 0 5 1400 429 257 147 26 chr3 106942063 106942219 -52657564 + L3 LINE CR1 3537 3711 -778 5 1400 284 311 48 0 chr3 106942891 106942994 -52656789 + MER45A DNA Tip100 53 160 -18 5 1400 227 308 118 17 chr3 106943292 106943411 -52656372 - L1M4 LINE L1 -435 5749 5619 5 1400 1579 230 145 3 chr3 106943971 106944337 -52655446 - MTD LTR MaLR -1 418 1 5 1400 245 284 154 71 chr3 106944580 106944762 -52655021 - MIR SINE MIR -65 197 1 5 1400 288 338 96 13 chr3 106944778 106944934 -52654849 - MIR3 SINE MIR -16 192 24 5 1400 311 305 74 22 chr3 106945677 106945846 -52653937 + MIRc SINE MIR 23 200 -68 5 1400 345 47 0 0 chr3 106946168 106946211 -52653572 + (TA)n Simple_repeat Simple_repeat 2 44 0 5 1400 27 29 0 0 chr3 106947404 106947438 -52652345 + AT_rich Low_complexity Low_complexity 1 34 0 5 1400 811 290 16 0 chr3 106947616 106947809 -52651974 + B3A SINE B2 1 196 -2 5 1400 384 227 51 10 chr3 106947833 106947931 -52651852 + B4 SINE B4 2 103 -189 5 1400 256 312 70 120 chr3 106947958 106948100 -52651683 + B1F SINE Alu 1 135 -14 5 1400 1855 88 0 0 chr3 106948124 106948375 -52651408 + Lx2B LINE L1 5693 5943 -1057 5 1400 907 148 13 0 chr3 106948374 106948523 -52651260 - Lx2B LINE L1 -915 6085 5935 5 1400 4840 138 43 14 chr3 106948513 106949241 -52650542 + Lx2B LINE L1 6200 6960 -40 5 1400 4756 24 0 0 chr3 106949241 106949777 -52650006 - L1Md_F2 LINE L1 -2 6580 6045 5 1400 4840 138 43 14 chr3 106949777 106949823 -52649960 + Lx2B LINE L1 6961 6996 -4 5 1400 32 43 0 0 chr3 106951076 106951122 -52648661 + AT_rich Low_complexity Low_complexity 1 46 0 5 1400 4341 65 0 4 chr3 106951150 106951693 -52648090 - L1_Mus4 LINE L1 -7 6629 6089 5 1400 2808 66 40 11 chr3 106951693 106952089 -52647694 + L1_Mus4 LINE L1 5723 6474 -526 5 1400 258 330 68 47 chr3 106954537 106954728 -52645055 - MIRc SINE MIR -13 255 61 5 1401 199 109 35 35 chr3 106954897 106954954 -52644829 + (CAGAGA)n Simple_repeat Simple_repeat 2 58 0 5 1401 292 378 60 20 chr3 106955593 106955793 -52643990 + LTR16E1 LTR ERVL 238 445 -93 5 1401 447 355 59 58 chr3 106958572 106958940 -52640843 + ORR1E LTR MaLR 6 369 -5 5 1401 214 206 29 0 chr3 106959560 106959628 -52640155 + (TCTA)n Simple_repeat Simple_repeat 4 73 0 5 1401 228 218 36 0 chr3 106959774 106959829 -52639954 - L2b LINE L2 -1 3374 3318 5 1401 1837 168 7 150 chr3 106960171 106960605 -52639178 + ORR1C1 LTR MaLR 1 372 -6 5 1401 225 240 12 62 chr3 106960983 106961063 -52638720 + LTR16A1 LTR ERVL 48 123 -333 5 1401 504 0 0 0 chr3 106961701 106961757 -52638026 + (TG)n Simple_repeat Simple_repeat 1 56 0 5 1401 558 0 0 0 chr3 106963720 106963782 -52636001 + (TCC)n Simple_repeat Simple_repeat 1 62 0 5 1401 442 306 83 52 chr3 106964260 106964453 -52635330 + MLT1L LTR MaLR 344 542 -68 5 1401 1078 45 11 33 chr3 106964787 106964971 -52634812 + (CA)n Simple_repeat Simple_repeat 1 180 0 5 1401 276 100 0 0 chr3 106965435 106965475 -52634308 + (GAAA)n Simple_repeat Simple_repeat 2 41 0 5 1401 270 95 0 0 chr3 106965508 106965550 -52634233 + (CA)n Simple_repeat Simple_repeat 2 43 0 5 1401 273 285 104 16 chr3 106965573 106965698 -52634085 - B1F2 SINE Alu -12 137 2 5 1401 372 278 8 34 chr3 106966663 106966782 -52633001 + CT-rich Low_complexity Low_complexity 2 117 0 5 1401 228 35 0 0 chr3 106967432 106967461 -52632322 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 5 1401 542 317 56 52 chr3 106967805 106968018 -52631765 + MLT1D LTR MaLR 7 220 -285 5 1401 436 230 150 53 chr3 106968052 106968104 -52631679 + MLT1D LTR MaLR 299 365 -140 5 1401 6228 112 48 10 chr3 106968104 106969027 -52630756 - RMER17B LTR ERVK 0 958 1 6 1401 436 230 150 53 chr3 106969027 106969107 -52630676 + MLT1D LTR MaLR 366 444 -61 5 1401 645 208 8 8 chr3 106969107 106969228 -52630555 + B3 SINE B2 1 121 -95 6 1401 712 278 9 60 chr3 106969256 106969474 -52630309 - MTD LTR MaLR -212 207 1 6 1401 200 324 0 0 chr3 106969826 106969900 -52629883 + (TATATG)n Simple_repeat Simple_repeat 2 75 0 6 1401 308 268 63 28 chr3 106969900 106970042 -52629741 + MER53 DNA hAT 47 193 0 6 1401 436 188 216 10 chr3 106970188 106970290 -52629493 - RSINE1 SINE B4 -40 125 3 6 1401 483 292 26 0 chr3 106971717 106971830 -52627953 + MTD LTR MaLR 48 163 -256 6 1401 689 223 156 10 chr3 106971842 106972041 -52627742 + MTD LTR MaLR 192 419 0 6 1401 819 348 105 27 chr3 106972049 106972637 -52627146 - L2 LINE L2 -507 2912 2279 6 1401 666 58 0 0 chr3 106974456 106974543 -52625240 + (GA)n Simple_repeat Simple_repeat 2 88 0 6 1401 197 353 23 23 chr3 106975861 106975948 -52623835 + MIR3 SINE MIR 72 158 -50 6 1401 1219 56 0 0 chr3 106976113 106976257 -52623526 + B1_Mm SINE Alu 2 145 -2 6 1401 1203 314 106 11 chr3 106976762 106977223 -52622560 - Lx8 LINE L1 -7 7466 6962 6 1401 202 351 14 0 chr3 106977651 106977725 -52622058 - L2 LINE L2 -563 2856 2782 6 1401 26 0 0 0 chr3 106978232 106978258 -52621525 + AT_rich Low_complexity Low_complexity 1 26 0 6 1401 938 161 31 6 chr3 106979163 106979325 -52620458 - URR1A DNA MER1_type -45 181 16 6 1401 302 273 34 21 chr3 106979923 106980040 -52619743 - MIR SINE MIR -85 183 61 6 1401 1915 175 3 6 chr3 106980508 106980847 -52618936 - Lx LINE L1 -1 6653 6316 6 1401 236 284 202 11 chr3 106982180 106982269 -52617514 + MamGypLTR1c LTR Gypsy 28 133 -670 6 1401 21 0 0 0 chr3 106982358 106982379 -52617404 + AT_rich Low_complexity Low_complexity 1 21 0 6 1401 1285 176 170 12 chr3 106983177 106983500 -52616283 - ORR1D1 LTR MaLR 0 374 1 6 1401 500 326 89 5 chr3 106983784 106983975 -52615808 + MIR SINE MIR 46 252 -10 6 1401 544 314 98 72 chr3 106984416 106984955 -52614828 + MLT2B3 LTR ERVL 2 554 0 6 1401 608 244 17 0 chr3 106985500 106985619 -52614164 + RSINE1 SINE B4 45 165 0 6 1401 270 328 78 99 chr3 106986742 106986933 -52612850 - MIR SINE MIR -4 272 79 6 1401 408 293 8 8 chr3 106986950 106987067 -52612716 + PB1D10 SINE Alu 1 117 0 6 1401 753 114 0 0 chr3 106987072 106987186 -52612597 + (GGA)n Simple_repeat Simple_repeat 2 115 0 6 1401 462 250 9 0 chr3 106988141 106988249 -52611534 + PB1D10 SINE Alu 1 109 -8 6 1401 286 327 48 30 chr3 106989040 106989207 -52610576 - MIRc SINE MIR -96 172 3 6 1401 396 0 0 0 chr3 106990425 106990469 -52609314 + (TG)n Simple_repeat Simple_repeat 2 45 0 6 1401 251 328 156 0 chr3 106990544 106990672 -52609111 + MIRc SINE MIR 17 164 -104 6 1401 315 0 0 0 chr3 106992765 106992800 -52606983 + (CA)n Simple_repeat Simple_repeat 2 36 0 6 1401 294 50 0 0 chr3 106992800 106992840 -52606943 + (CAAAAA)n Simple_repeat Simple_repeat 4 43 0 6 1401 468 339 78 46 chr3 106992958 106993264 -52606519 + Lx9 LINE L1 7176 7491 -153 6 1401 363 333 70 0 chr3 106993660 106993816 -52605967 - L1MB5 LINE L1 -147 6027 5861 6 1401 662 0 13 0 chr3 106994653 106994731 -52605052 + (TC)n Simple_repeat Simple_repeat 2 80 0 6 1401 450 279 8 32 chr3 106994792 106994918 -52604865 - B4A SINE B4 -22 270 148 6 1401 212 394 22 50 chr3 106995103 106995242 -52604541 - MIRb SINE MIR -82 186 52 6 1401 774 97 0 0 chr3 106996032 106996145 -52603638 + (GGGA)n Simple_repeat Simple_repeat 4 116 0 6 1401 256 191 44 73 chr3 106998733 106998801 -52600982 + MER5A1 DNA MER1_type 55 120 -46 6 1401 669 321 50 14 chr3 106998867 106999148 -52600635 + B4A SINE B4 2 292 0 6 1401 21 71 0 0 chr3 106999156 106999198 -52600585 + AT_rich Low_complexity Low_complexity 1 42 0 6 1401 297 303 20 54 chr3 107000134 107000235 -52599548 - MLT2B4 LTR ERVL -123 433 287 1 1401 1259 279 85 7 chr3 107000235 107000672 -52599111 + Lx8 LINE L1 6857 7327 -146 2 1401 924 24 24 0 chr3 107000672 107000795 -52598988 + (TAGA)n Simple_repeat Simple_repeat 2 127 0 3 1401 1016 247 22 40 chr3 107000967 107001245 -52598538 + B4 SINE B4 2 274 -18 4 1401 256 208 21 0 chr3 107001887 107001935 -52597848 - MLT1K LTR MaLR -4 591 543 5 1401 405 0 0 0 chr3 107002163 107002208 -52597575 + (GA)n Simple_repeat Simple_repeat 2 46 0 6 1401 266 236 53 53 chr3 107002412 107002488 -52597295 + B4A SINE B4 139 214 -78 7 1401 765 242 141 18 chr3 107002503 107002858 -52596925 - RMER20B LTR ERVK -41 586 138 8 1401 257 206 14 81 chr3 107003009 107003083 -52596700 + B4A SINE B4 206 274 -18 7 1401 1978 189 114 3 chr3 107003314 107003691 -52596092 + MTD LTR MaLR 1 419 0 9 1401 189 107 0 0 chr3 107005155 107005183 -52594600 + (TGG)n Simple_repeat Simple_repeat 2 29 0 1 1401 642 339 55 65 chr3 107005204 107005229 -52594554 - B4 SINE B4 0 292 270 1 1401 549 30 0 0 chr3 107005229 107005296 -52594487 + (TG)n Simple_repeat Simple_repeat 2 68 0 1 1401 642 339 55 65 chr3 107005296 107005563 -52594220 - B4 SINE B4 -23 269 3 1 1401 288 0 0 0 chr3 107005564 107005596 -52594187 + (TTG)n Simple_repeat Simple_repeat 1 32 0 1 1401 800 246 78 21 chr3 107005618 107005809 -52593974 - ID_B1 SINE B4 -18 206 5 1 1401 208 70 47 0 chr3 107006454 107006497 -52593286 + (GA)n Simple_repeat Simple_repeat 2 46 0 1 1401 241 316 69 17 chr3 107006702 107006818 -52592965 + MIRb SINE MIR 113 234 -34 1 1401 463 289 100 28 chr3 107007180 107007408 -52592375 - MLT1F2 LTR MaLR -156 404 137 1 1401 2395 135 26 6 chr3 107008244 107008637 -52591146 + ORR1B1 LTR MaLR 1 386 -8 1 1401 1693 176 158 13 chr3 107009304 107009690 -52590093 - RMER10A LTR ERVL 0 442 1 1 1401 1673 172 33 77 chr3 107009855 107010284 -52589499 + RMER17C LTR ERVK 1 410 0 2 1401 227 93 0 23 chr3 107011150 107011194 -52588589 + (TCTG)n Simple_repeat Simple_repeat 4 46 0 2 1401 671 179 0 6 chr3 107011203 107011383 -52588400 + (TG)n Simple_repeat Simple_repeat 2 180 0 2 1401 247 318 21 79 chr3 107012348 107012488 -52587295 - MamRep4096 DNA hAT? -276 150 19 2 1401 1155 248 42 0 chr3 107013140 107013402 -52586381 + B4 SINE B4 2 274 -18 2 1401 751 250 43 0 chr3 107014566 107014730 -52585053 + B3A SINE B2 1 171 -27 2 1401 519 60 0 0 chr3 107014738 107014805 -52584978 + (CA)n Simple_repeat Simple_repeat 2 68 0 2 1401 23 0 0 0 chr3 107014807 107014830 -52584953 + AT_rich Low_complexity Low_complexity 1 23 0 2 1401 968 236 34 10 chr3 107014834 107015039 -52584744 + B3 SINE B2 2 211 -5 2 1401 840 148 8 0 chr3 107015052 107015180 -52584603 - B1_Mur2 SINE Alu 0 149 21 2 1401 226 324 25 92 chr3 107015056 107015219 -52584564 + YREP_Mm Unknown Unknown 181 332 -1480 3 1401 303 113 0 0 chr3 107018128 107018181 -52581602 + (TGAA)n Simple_repeat Simple_repeat 4 56 0 3 1401 233 246 200 0 chr3 107018523 107018588 -52581195 - ID4_ SINE ID -1 82 5 3 1401 645 38 0 0 chr3 107019046 107019126 -52580657 + (GAAA)n Simple_repeat Simple_repeat 1 80 0 3 1401 224 308 132 0 chr3 107019532 107019623 -52580160 + MIRc SINE MIR 60 162 -106 3 1401 442 319 119 42 chr3 107020400 107020685 -52579098 - L2a LINE L2 -1 3425 3119 3 1401 215 226 0 59 chr3 107021409 107021480 -52578303 + MIR SINE MIR 74 139 -129 3 1401 195 365 12 0 chr3 107023011 107023096 -52576687 - L2b LINE L2 0 3375 3290 3 1401 398 284 9 31 chr3 107024239 107024369 -52575414 - MIR SINE MIR -28 240 116 3 1401 187 191 0 96 chr3 107025890 107025942 -52573841 - MIRc SINE MIR -122 146 100 3 1401 290 278 52 40 chr3 107026755 107026867 -52572916 + MIR SINE MIR 54 175 -101 4 1401 1349 276 35 67 chr3 107026891 107027307 -52572476 + L1_Mur3 LINE L1 3669 4060 -1820 4 1401 1626 159 26 187 chr3 107027307 107027762 -52572021 + ORR1C2 LTR MaLR 3 384 0 4 1401 1349 276 35 67 chr3 107027762 107027943 -52571840 + L1_Mur3 LINE L1 4061 4247 -1633 4 1401 1031 261 56 28 chr3 107027946 107028230 -52571553 + B4 SINE B4 1 292 0 4 1401 411 106 0 0 chr3 107028247 107028313 -52571470 + (CA)n Simple_repeat Simple_repeat 1 66 0 4 1401 475 291 34 29 chr3 107028320 107028525 -52571258 + L1M2 LINE L1 4327 4532 -1611 4 1401 633 301 128 13 chr3 107028525 107028751 -52571032 + ORR1E LTR MaLR 108 359 0 4 1401 357 252 146 11 chr3 107028780 107029016 -52570767 + L1_Mur3 LINE L1 5143 5448 -432 4 1401 391 231 13 0 chr3 107029022 107029100 -52570683 + B3A SINE B2 1 79 -119 4 1401 312 27 0 0 chr3 107029133 107029170 -52570613 + (CA)n Simple_repeat Simple_repeat 2 38 0 4 1401 591 273 12 101 chr3 107029184 107029581 -52570202 + L1_Mur3 LINE L1 5421 5823 -477 4 1401 1303 154 14 5 chr3 107029581 107029802 -52569981 + RLTR31A_Mm LTR ERVK 81 303 -281 4 1401 541 218 83 0 chr3 107030322 107030455 -52569328 - ID_B1 SINE B4 -1 223 80 5 1401 590 269 8 0 chr3 107031696 107031826 -52567957 + ID_B1 SINE B4 70 200 -24 5 1401 211 170 0 96 chr3 107031826 107031878 -52567905 + PB1D7 SINE Alu 65 111 -9 5 1401 333 117 0 0 chr3 107032035 107032095 -52567688 + (TC)n Simple_repeat Simple_repeat 1 60 0 5 1401 356 82 16 0 chr3 107032095 107032156 -52567627 + (TG)n Simple_repeat Simple_repeat 1 62 0 5 1401 553 302 6 36 chr3 107032296 107032464 -52567319 - B4 SINE B4 -63 229 67 5 1401 303 49 0 0 chr3 107032471 107032512 -52567271 + (TTTTTG)n Simple_repeat Simple_repeat 2 42 0 5 1401 317 331 25 95 chr3 107033402 107033602 -52566181 - MIR SINE MIR -37 225 40 5 1401 446 323 6 47 chr3 107033733 107033780 -52566003 + ID SINE ID 40 79 -145 5 1401 660 260 8 0 chr3 107033780 107033907 -52565876 + B1F1 SINE Alu 1 128 -21 5 1401 226 304 13 0 chr3 107033913 107033992 -52565791 + GA-rich Low_complexity Low_complexity 3 82 0 6 1401 695 276 104 29 chr3 107034636 107034916 -52564867 - MER2B DNA MER2_type -34 302 2 6 1401 793 299 40 30 chr3 107035167 107035570 -52564213 - L1MB8 LINE L1 -6 6172 5766 6 1401 180 77 0 0 chr3 107035711 107035737 -52564046 + (T)n Simple_repeat Simple_repeat 1 26 0 6 1401 285 197 0 0 chr3 107037513 107037574 -52562209 + (TTTG)n Simple_repeat Simple_repeat 2 62 0 6 1401 395 242 194 8 chr3 107037575 107037704 -52562079 - RMER30 DNA MER1_type -43 159 7 6 1401 290 221 104 0 chr3 107038696 107038773 -52561010 - MIRb SINE MIR -142 126 42 6 1401 377 285 71 26 chr3 107038997 107039152 -52560631 - RSINE1 SINE B4 -2 163 2 6 1401 228 348 0 0 chr3 107039174 107039243 -52560540 + MIR SINE MIR 19 87 -175 6 1401 3442 73 4 40 chr3 107039243 107039715 -52560068 + L1_Mus2 LINE L1 6103 6557 -9 6 1401 1088 274 45 26 chr3 107043251 107043562 -52556221 + MTEa LTR MaLR 1 317 -62 7 1401 183 310 81 35 chr3 107044511 107044598 -52555185 + MIRb SINE MIR 46 136 -132 7 1401 271 136 17 17 chr3 107045264 107045324 -52554459 + GA-rich Low_complexity Low_complexity 2 61 0 7 1401 1027 129 0 11 chr3 107045325 107045505 -52554278 + (GGGA)n Simple_repeat Simple_repeat 3 180 0 7 1401 867 254 102 46 chr3 107045786 107046264 -52553519 + Charlie4a DNA MER1_type 4 508 0 7 1401 1152 266 96 6 chr3 107046477 107046810 -52552973 - MLT1A0 LTR MaLR 0 365 3 7 1401 507 306 34 29 chr3 107047768 107047977 -52551806 - MLT1N2 LTR MaLR -8 554 345 7 1401 198 375 0 43 chr3 107048598 107048690 -52551093 + MIRc SINE MIR 40 127 -141 7 1401 765 154 0 0 chr3 107048807 107048924 -52550859 - B1_Mur2 SINE Alu -32 117 1 7 1401 846 278 9 47 chr3 107048923 107049138 -52550645 - B3 SINE B2 -1 215 9 7 1401 304 312 25 12 chr3 107049206 107049287 -52550496 + RSINE1 SINE B4 38 119 -46 8 1401 315 0 0 0 chr3 107049287 107049322 -52550461 + (CA)n Simple_repeat Simple_repeat 1 35 0 8 1401 783 309 30 25 chr3 107049359 107049633 -52550150 + B4A SINE B4 1 292 0 8 1401 411 119 0 0 chr3 107049660 107049727 -52550056 + (CA)n Simple_repeat Simple_repeat 2 68 0 8 1401 758 194 29 0 chr3 107050787 107050926 -52548857 - B1_Mur4 SINE Alu 0 150 8 8 1401 230 302 81 86 chr3 107050932 107051142 -52548641 - MLT1N2 LTR MaLR -58 332 124 7 1401 429 20 0 0 chr3 107051323 107051373 -52548410 + (TA)n Simple_repeat Simple_repeat 2 51 0 8 1401 269 155 17 0 chr3 107051400 107051458 -52548325 + (CA)n Simple_repeat Simple_repeat 1 59 0 8 1401 331 247 0 0 chr3 107052353 107052426 -52547357 + ID SINE ID 2 74 -150 8 1401 216 0 0 0 chr3 107053341 107053365 -52546418 + (CA)n Simple_repeat Simple_repeat 2 25 0 8 1401 21 57 0 0 chr3 107053704 107053739 -52546044 + AT_rich Low_complexity Low_complexity 1 35 0 8 1401 339 113 0 0 chr3 107053840 107053893 -52545890 + (CA)n Simple_repeat Simple_repeat 2 54 0 9 1401 524 286 45 0 chr3 107054614 107054768 -52545015 + RSINE1 SINE B4 3 163 -2 9 1401 1446 245 23 60 chr3 107055058 107055444 -52544339 - MTEa LTR MaLR -5 374 3 9 1401 4287 119 81 17 chr3 107055652 107056359 -52543424 + RMER6A LTR ERVK 1 752 -4 9 1401 202 250 59 0 chr3 107058015 107058083 -52541700 + MIRb SINE MIR 59 130 -138 9 1401 859 136 189 68 chr3 107058117 107058307 -52541476 + B3 SINE B2 2 214 -2 9 1401 604 204 14 35 chr3 107058498 107058640 -52541143 - ID_B1 SINE B4 -10 214 76 9 1401 1241 114 11 0 chr3 107060129 107060305 -52539478 + B2_Mm1t SINE B2 2 179 -14 9 1401 339 73 357 26 chr3 107060337 107060449 -52539334 + B2_Mm2 SINE B2 47 195 0 9 1401 299 315 12 36 chr3 107061014 107061182 -52538601 + MER117 DNA MER1_type 1 164 -33 9 1401 402 21 0 0 chr3 107061235 107061282 -52538501 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 1 1401 1185 71 0 0 chr3 107061554 107061709 -52538074 - L1_Mus1 LINE L1 0 6567 6413 1 1401 1047 97 7 11 chr3 107061709 107061866 -52537917 + L1_Mus1 LINE L1 6292 6414 -153 1 1401 532 165 0 11 chr3 107061932 107062024 -52537759 + PB1D9 SINE Alu 17 107 -13 1 1401 303 28 0 0 chr3 107062024 107062060 -52537723 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 1 1401 420 203 124 25 chr3 107062060 107062088 -52537695 + B1_Mur2 SINE Alu 122 148 -1 1 1401 369 333 80 42 chr3 107064862 107065075 -52534708 + LTR37B LTR ERV1 1 221 -247 1 1401 1212 259 53 35 chr3 107065169 107065346 -52534437 - L1MB3 LINE L1 -4 6179 5997 1 1401 567 0 0 0 chr3 107065346 107065409 -52534374 + (TCCC)n Simple_repeat Simple_repeat 2 64 0 1 1401 1212 259 53 35 chr3 107065409 107065683 -52534100 - L1MB3 LINE L1 -187 5996 5721 1 1401 1354 231 60 98 chr3 107065688 107066105 -52533678 + MTD LTR MaLR 5 405 -14 1 1401 1205 249 122 35 chr3 107066116 107066921 -52532862 - L1MB3 LINE L1 -458 5725 4843 1 1401 656 299 7 0 chr3 107069107 107069261 -52530522 + RSINE1 SINE B4 1 155 -10 1 1401 251 157 20 0 chr3 107069261 107069312 -52530471 + (TG)n Simple_repeat Simple_repeat 1 52 0 1 1401 227 204 18 53 chr3 107069420 107069468 -52530315 + B1F SINE Alu 5 52 -97 1 1401 423 0 0 0 chr3 107069468 107069515 -52530268 + (CA)n Simple_repeat Simple_repeat 1 47 0 1 1401 472 177 23 124 chr3 107070363 107070492 -52529291 + PB1D10 SINE Alu 2 117 0 1 1401 409 8 7 131 chr3 107070616 107070761 -52529022 + (TA)n Simple_repeat Simple_repeat 2 128 0 1 1401 993 260 122 3 chr3 107070787 107071073 -52528710 - MTEa LTR MaLR -59 320 1 1 1401 932 224 96 64 chr3 107071365 107071646 -52528137 - B4 SINE B4 0 292 3 1 1401 1296 184 252 13 chr3 107072031 107072340 -52527443 - ORR1C2 LTR MaLR 0 384 2 1 1401 481 139 217 0 chr3 107073091 107073206 -52526577 - URR1B DNA MER1_type 0 225 86 1 1401 724 268 107 0 chr3 107074150 107074355 -52525428 + B4 SINE B4 14 240 -52 1 1401 420 37 0 0 chr3 107074364 107074418 -52525365 + (CA)n Simple_repeat Simple_repeat 2 55 0 1 1401 676 292 117 90 chr3 107074692 107075060 -52524723 - MLT1B LTR MaLR -12 378 1 1 1401 414 260 96 16 chr3 107075358 107075483 -52524300 - B1F2 SINE Alu -13 136 2 1 1401 410 236 148 8 chr3 107077100 107077228 -52522555 - B1_Mur4 SINE Alu 0 150 5 1 1401 2011 126 31 64 chr3 107077767 107078191 -52521592 - RMER17C LTR ERVK 0 410 1 1 1401 314 270 174 10 chr3 107078690 107078956 -52520827 + MER33 DNA MER1_type 11 319 -5 1 1401 239 310 0 0 chr3 107078984 107079042 -52520741 + ID4_ SINE ID 2 59 -24 1 1401 1016 241 38 45 chr3 107079439 107079730 -52520053 + B4 SINE B4 1 289 -3 1 1401 23 33 0 0 chr3 107080130 107080160 -52519623 + AT_rich Low_complexity Low_complexity 1 30 0 1 1401 242 258 0 0 chr3 107080160 107080226 -52519557 + L1M5 LINE L1 5601 5666 -458 1 1401 478 0 16 0 chr3 107080524 107080587 -52519196 + B1_Mus2 SINE Alu 84 147 0 1 1401 216 86 0 0 chr3 107080587 107080622 -52519161 + (A)n Simple_repeat Simple_repeat 1 35 0 1 1401 524 261 58 0 chr3 107080739 107080877 -52518906 + ID_B1 SINE B4 79 224 0 1 1401 2042 142 45 45 chr3 107081191 107081589 -52518194 - RMER10B LTR ERVL 0 398 1 1 1401 743 211 28 0 chr3 107083387 107083529 -52516254 - B1_Mur3 SINE Alu -2 147 2 1 1401 216 297 0 30 chr3 107083616 107083682 -52516101 - MIRb SINE MIR -140 128 65 1 1401 269 311 120 91 chr3 107085244 107085520 -52514263 + B4A SINE B4 1 284 -8 1 1401 396 287 125 0 chr3 107085677 107085813 -52513970 + RSINE1 SINE B4 2 154 -11 1 1402 715 229 11 58 chr3 107085844 107086034 -52513749 + B3A SINE B2 2 182 -16 1 1402 26 0 0 0 chr3 107086190 107086216 -52513567 + AT_rich Low_complexity Low_complexity 1 26 0 1 1402 23 33 0 0 chr3 107086464 107086494 -52513289 + AT_rich Low_complexity Low_complexity 1 30 0 1 1402 266 312 83 0 chr3 107086831 107086849 -52512934 - ID_B1 SINE B4 -16 208 91 1 1402 314 286 88 0 chr3 107086849 107086940 -52512843 - B1F1 SINE Alu -41 108 10 1 1402 195 69 0 0 chr3 107087074 107087103 -52512680 + (T)n Simple_repeat Simple_repeat 1 29 0 1 1402 949 128 28 7 chr3 107087389 107087531 -52512252 - B1_Mus1 SINE Alu -2 146 2 1 1402 695 229 32 32 chr3 107087675 107087833 -52511950 - RSINE1 SINE B4 -6 159 2 1 1402 1398 209 87 12 chr3 107088949 107089293 -52510490 - ORR1D1 LTR MaLR 0 374 5 1 1402 258 236 27 27 chr3 107089374 107089448 -52510335 + MLT2B1 LTR ERVL 10 83 -473 1 1402 306 301 143 0 chr3 107089556 107089764 -52510019 + MLT2B1 LTR ERVL 319 547 -9 1 1402 531 125 0 0 chr3 107089799 107089879 -52509904 + MTC LTR MaLR 2 81 -340 1 1402 5257 99 29 5 chr3 107089883 107090643 -52509140 + Lx4A LINE L1 6274 7051 -7 1 1402 752 183 0 27 chr3 107090662 107090847 -52508936 + GA-rich Low_complexity Low_complexity 1 180 0 1 1402 1714 112 84 3 chr3 107090858 107091145 -52508638 + MTC LTR MaLR 68 377 -44 1 1402 925 298 87 3 chr3 107091285 107091571 -52508212 - MER68 LTR ERVL -91 472 163 1 1402 821 190 0 7 chr3 107091656 107091794 -52507989 - B1_Mus2 SINE Alu -10 137 1 1 1402 662 123 10 60 chr3 107091807 107091941 -52507842 - B1_Mus2 SINE Alu 0 147 29 1 1402 1250 41 0 0 chr3 107092102 107092249 -52507534 + B1_Mus2 SINE Alu 1 147 0 1 1402 1441 74 16 0 chr3 107092271 107092461 -52507322 + B2_Mm2 SINE B2 1 193 -2 1 1402 259 295 61 18 chr3 107092701 107092713 -52507070 - PB1D7 SINE Alu 0 120 109 1 1402 1177 75 0 0 chr3 107092713 107092859 -52506924 - B1_Mus2 SINE Alu 0 147 2 1 1402 259 295 61 18 chr3 107092859 107092960 -52506823 - PB1D7 SINE Alu -12 108 2 1 1402 207 0 0 0 chr3 107094439 107094462 -52505321 + (CA)n Simple_repeat Simple_repeat 2 24 0 1 1402 224 295 24 146 chr3 107095806 107095929 -52503854 + PB1D10 SINE Alu 2 109 -8 1 1402 1283 199 195 6 chr3 107095985 107096319 -52503464 + MTD LTR MaLR 12 408 -11 1 1402 2092 111 33 57 chr3 107097366 107097701 -52502082 - ORR1A2 LTR MaLR 0 327 1 1 1402 208 294 15 0 chr3 107097759 107097827 -52501956 + L2a LINE L2 3340 3408 -18 1 1402 267 281 0 119 chr3 107097940 107098049 -52501734 + ID_B1 SINE B4 80 175 -49 1 1402 284 290 32 11 chr3 107097974 107098068 -52501715 + PB1D10 SINE Alu 20 115 -2 1 1402 387 0 0 0 chr3 107098921 107098964 -52500819 + (CA)n Simple_repeat Simple_repeat 1 43 0 1 1402 582 152 11 229 chr3 107099030 107099209 -52500574 + B1_Mm SINE Alu 2 141 -6 1 1402 420 178 175 63 chr3 107099672 107099798 -52499985 + B1_Mus1 SINE Alu 9 148 0 1 1402 1370 86 48 0 chr3 107099963 107100149 -52499634 - B2_Mm2 SINE B2 0 195 1 1 1402 411 169 26 13 chr3 107100176 107100254 -52499529 - B3 SINE B2 -137 79 1 1 1402 749 175 29 14 chr3 107101209 107101348 -52498435 + B1_Mus2 SINE Alu 2 142 -5 1 1402 246 32 0 0 chr3 107102601 107102632 -52497151 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1 1402 681 249 18 6 chr3 107103308 107103478 -52496305 + B3A SINE B2 7 178 -20 1 1402 22 0 0 0 chr3 107104168 107104190 -52495593 + AT_rich Low_complexity Low_complexity 1 22 0 1 1402 248 306 85 45 chr3 107104464 107104655 -52495128 + MIRb SINE MIR 29 231 -37 1 1402 596 221 43 29 chr3 107105263 107105403 -52494380 - B1_Mur2 SINE Alu -7 142 1 1 1402 1655 36 0 0 chr3 107106970 107107162 -52492621 + B2_Mm1a SINE B2 2 193 0 1 1402 533 236 101 65 chr3 107107812 107108011 -52491772 - ID_B1 SINE B4 -2 222 17 1 1402 345 173 51 51 chr3 107108121 107108200 -52491583 - ID_B1 SINE B4 0 224 146 1 1402 1000 82 14 0 chr3 107108219 107108365 -52491418 - B1_Mus1 SINE Alu 0 148 1 1 1402 183 178 43 43 chr3 107109193 107109240 -52490543 + L2b LINE L2 3326 3372 -3 1 1402 443 256 94 0 chr3 107110004 107110121 -52489662 - B1F2 SINE Alu 0 149 22 1 1402 587 229 13 40 chr3 107110940 107111090 -52488693 + B1_Mur1 SINE Alu 3 148 -1 1 1402 420 286 113 20 chr3 107111320 107111470 -52488313 - RSINE1 SINE B4 0 165 2 1 1402 23 33 0 0 chr3 107111678 107111708 -52488075 + AT_rich Low_complexity Low_complexity 1 30 0 1 1402 749 244 17 28 chr3 107111719 107111900 -52487883 + B3 SINE B2 8 186 -30 1 1402 221 303 15 0 chr3 107111904 107111970 -52487813 + (CA)n Simple_repeat Simple_repeat 2 68 0 1 1402 23 0 0 0 chr3 107112391 107112414 -52487369 + AT_rich Low_complexity Low_complexity 1 23 0 1 1402 238 203 13 127 chr3 107112909 107112988 -52486795 + ID4 SINE ID 1 70 -13 1 1402 1417 73 16 5 chr3 107113011 107113203 -52486580 + B2_Mm2 SINE B2 2 195 0 1 1402 240 135 0 39 chr3 107113290 107113367 -52486416 + A-rich Low_complexity Low_complexity 2 75 0 1 1402 1115 69 7 0 chr3 107113505 107113649 -52486134 - B1_Mus2 SINE Alu -1 146 2 1 1402 21 57 0 0 chr3 107114816 107114851 -52484932 + AT_rich Low_complexity Low_complexity 1 35 0 1 1402 309 176 118 26 chr3 107115660 107115736 -52484047 - ID4_ SINE ID 0 83 1 1 1402 630 206 42 30 chr3 107116141 107116306 -52483477 + B3 SINE B2 48 214 -2 1 1402 300 307 34 0 chr3 107116362 107116450 -52483333 + MIRm SINE MIR 64 154 -122 1 1402 357 24 0 0 chr3 107116454 107116496 -52483287 + (CCTG)n Simple_repeat Simple_repeat 2 43 0 1 1402 904 143 50 85 chr3 107116737 107116936 -52482847 + B2_Mm2 SINE B2 2 193 -2 1 1402 308 320 17 0 chr3 107116994 107117086 -52482697 - ID_B1 SINE B4 -105 187 83 1 1402 822 147 16 0 chr3 107117087 107117216 -52482567 - B1_Mur4 SINE Alu -18 132 2 1 1402 718 201 95 58 chr3 107117764 107117938 -52481845 + B3 SINE B2 10 180 -36 2 1402 195 100 0 0 chr3 107117938 107117968 -52481815 + (CAGA)n Simple_repeat Simple_repeat 1 30 0 2 1402 718 201 95 58 chr3 107117968 107117983 -52481800 + B3 SINE B2 181 205 -11 2 1402 215 219 118 40 chr3 107118024 107118100 -52481683 + B1F1 SINE Alu 22 103 -46 2 1402 294 315 26 61 chr3 107118182 107118297 -52481486 + PB1D10 SINE Alu 7 117 0 2 1402 1178 29 0 0 chr3 107118439 107118577 -52481206 - B1_Mus2 SINE Alu -9 138 1 2 1402 827 214 43 11 chr3 107118598 107118782 -52481001 - B3 SINE B2 -6 210 21 2 1402 316 359 19 0 chr3 107119082 107119188 -52480595 - PB1D10 SINE Alu -6 111 4 2 1402 456 19 0 0 chr3 107120355 107120408 -52479375 + (CA)n Simple_repeat Simple_repeat 2 54 0 2 1402 184 72 47 23 chr3 107120457 107120500 -52479283 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 2 1402 223 260 110 0 chr3 107120966 107121039 -52478744 + ID4_ SINE ID 3 83 0 2 1402 495 87 0 0 chr3 107121089 107121158 -52478625 + (TG)n Simple_repeat Simple_repeat 2 70 0 2 1402 1076 23 0 8 chr3 107121311 107121443 -52478340 + (TTTC)n Simple_repeat Simple_repeat 2 132 0 2 1402 1152 76 0 0 chr3 107121443 107121588 -52478195 - B1_Mm SINE Alu -2 145 1 2 1402 407 287 88 34 chr3 107121673 107121821 -52477962 - MER5A1 DNA MER1_type -10 156 1 2 1402 238 296 89 95 chr3 107121954 107122133 -52477650 - MER5B DNA MER1_type 0 178 1 2 1402 323 256 0 12 chr3 107122229 107122312 -52477471 + ID_B1 SINE B4 143 224 0 2 1402 25 95 0 0 chr3 107122359 107122433 -52477350 + AT_rich Low_complexity Low_complexity 1 74 0 2 1402 370 252 59 59 chr3 107122660 107122795 -52476988 - B1_Mur1 SINE Alu -7 142 8 2 1402 1168 51 0 0 chr3 107123048 107123186 -52476597 + B1_Mus2 SINE Alu 1 138 -9 2 1402 233 29 29 0 chr3 107123186 107123220 -52476563 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 2 1402 306 307 76 55 chr3 107123323 107123468 -52476315 + RSINE1 SINE B4 13 160 -5 2 1402 839 166 177 0 chr3 107123470 107123645 -52476138 - B3 SINE B2 -10 206 1 2 1402 495 0 0 0 chr3 107123942 107123997 -52475786 + (TG)n Simple_repeat Simple_repeat 2 56 0 2 1402 267 250 14 14 chr3 107124002 107124071 -52475712 - ID4 SINE ID -13 70 2 2 1402 286 218 120 54 chr3 107124186 107124278 -52475505 - PB1D10 SINE Alu -3 114 17 2 1402 281 197 60 15 chr3 107125620 107125687 -52474096 + B1F2 SINE Alu 12 81 -68 2 1402 1153 55 7 14 chr3 107126059 107126207 -52473576 + B1_Mus2 SINE Alu 1 147 0 2 1402 723 172 50 56 chr3 107126320 107126499 -52473284 + B2_Mm2 SINE B2 10 187 -8 2 1402 1283 93 22 0 chr3 107126659 107126841 -52472942 + B2_Mm2 SINE B2 2 187 -8 2 1402 306 0 0 0 chr3 107129495 107129529 -52470254 + (A)n Simple_repeat Simple_repeat 1 34 0 2 1402 23 0 0 0 chr3 107130691 107130714 -52469069 + AT_rich Low_complexity Low_complexity 1 23 0 2 1402 21 0 0 0 chr3 107130726 107130747 -52469036 + GC_rich Low_complexity Low_complexity 1 21 0 2 1402 274 93 23 0 chr3 107130800 107130843 -52468940 - B3 SINE B2 -139 77 34 2 1402 346 231 13 0 chr3 107130819 107130897 -52468886 + B3 SINE B2 133 211 -5 2 1402 27 0 0 0 chr3 107132991 107133018 -52466765 + AT_rich Low_complexity Low_complexity 1 27 0 2 1402 246 62 0 0 chr3 107136412 107136444 -52463339 + (CTCG)n Simple_repeat Simple_repeat 2 33 0 2 1402 221 292 97 0 chr3 107137980 107138052 -52461731 + ID4 SINE ID 5 83 0 2 1402 686 261 0 0 chr3 107138073 107138215 -52461568 + B1_Mur1 SINE Alu 1 142 -7 2 1402 704 222 33 16 chr3 107138217 107138400 -52461383 - B3A SINE B2 -11 187 2 2 1402 353 324 9 9 chr3 107138746 107138858 -52460925 - L1MC5 LINE L1 -1158 6803 6692 2 1402 1233 42 0 0 chr3 107140240 107140382 -52459401 + B1_Mm SINE Alu 1 142 -5 2 1402 374 222 0 0 chr3 107140389 107140461 -52459322 + B1F SINE Alu 70 141 -8 2 1402 315 320 56 34 chr3 107140679 107140857 -52458926 + MIR SINE MIR 68 249 -13 2 1402 946 233 52 6 chr3 107140858 107141168 -52458615 - RMER15 LTR ERVL 0 575 198 2 1402 635 263 0 0 chr3 107141274 107141407 -52458376 + B1_Mur1 SINE Alu 1 133 -16 2 1402 356 296 23 46 chr3 107141419 107141550 -52458233 - RMER10B LTR ERVL -2 396 269 2 1402 830 166 194 28 chr3 107141873 107142053 -52457730 - B3 SINE B2 -5 211 2 2 1402 837 210 145 0 chr3 107142118 107142304 -52457479 - B3 SINE B2 -3 213 1 2 1402 439 115 442 0 chr3 107142340 107142444 -52457339 - B1_Mur4 SINE Alu 0 150 1 2 1402 225 0 0 0 chr3 107142452 107142477 -52457306 + (T)n Simple_repeat Simple_repeat 1 25 0 2 1402 1236 54 0 0 chr3 107142477 107142625 -52457158 - B1_Mus1 SINE Alu 0 148 1 2 1402 325 283 95 49 chr3 107142635 107142914 -52456869 - L1M5 LINE L1 -706 5473 5182 2 1402 198 0 0 0 chr3 107142923 107142945 -52456838 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 2 1402 875 174 14 0 chr3 107142945 107143079 -52456704 - B1_Mur4 SINE Alu -9 141 6 2 1402 310 308 116 76 chr3 107143079 107143240 -52456543 - L1M5 LINE L1 -965 5181 5026 2 1402 861 97 250 0 chr3 107143701 107143845 -52455938 + B2_Mm2 SINE B2 2 181 -14 2 1402 253 273 21 74 chr3 107143845 107143940 -52455843 - PB1D10 SINE Alu -6 111 22 2 1402 234 0 0 0 chr3 107144161 107144187 -52455596 + (TTG)n Simple_repeat Simple_repeat 2 27 0 2 1402 242 209 88 15 chr3 107144442 107144510 -52455273 + L3 LINE CR1 4405 4477 -12 2 1402 246 239 47 9 chr3 107145115 107145229 -52454554 + L2b LINE L2 3027 3146 -241 2 1402 279 0 0 0 chr3 107145262 107145293 -52454490 + (TG)n Simple_repeat Simple_repeat 2 32 0 2 1402 351 0 0 0 chr3 107145293 107145331 -52454452 + (TA)n Simple_repeat Simple_repeat 2 40 0 2 1402 733 154 138 0 chr3 107145657 107145787 -52453996 - B1_Mur4 SINE Alu 0 150 3 2 1402 414 0 0 0 chr3 107146958 107147004 -52452779 + (TG)n Simple_repeat Simple_repeat 1 46 0 2 1402 216 0 0 0 chr3 107147073 107147097 -52452686 + (A)n Simple_repeat Simple_repeat 1 24 0 2 1402 451 173 0 96 chr3 107147111 107147226 -52452557 + B1_Mur4 SINE Alu 43 146 -4 2 1402 330 254 127 0 chr3 107147537 107147647 -52452136 - RSINE1 SINE B4 -40 125 2 2 1402 945 199 47 47 chr3 107147690 107147901 -52451882 + B3 SINE B2 2 212 -4 2 1402 639 254 8 0 chr3 107148024 107148158 -52451625 - B3 SINE B2 -81 135 1 2 1402 201 310 14 0 chr3 107148308 107148379 -52451404 - MIR SINE MIR -6 256 185 2 1402 240 292 24 103 chr3 107148366 107148492 -52451291 - L2c LINE L2 0 3387 3272 2 1402 34 55 0 0 chr3 107148859 107148914 -52450869 + AT_rich Low_complexity Low_complexity 1 55 0 2 1402 1075 64 50 0 chr3 107149152 107149292 -52450491 - B1_Mus1 SINE Alu 0 148 2 2 1402 1626 47 0 0 chr3 107149310 107149502 -52450281 - B2_Mm1a SINE B2 0 193 2 2 1402 1252 94 0 20 chr3 107149597 107149750 -52450033 + B2_Mm2 SINE B2 2 154 -41 2 1402 5718 57 42 83 chr3 107149750 107150287 -52449496 + RLTR13C2 LTR ERVK 1 508 -300 2 1402 1464 60 16 0 chr3 107150287 107150470 -52449313 - B2_Mm1a SINE B2 -7 186 1 2 1402 5718 57 42 83 chr3 107150470 107150775 -52449008 + RLTR13C2 LTR ERVK 509 808 0 2 1402 1252 94 0 20 chr3 107150775 107150817 -52448966 + B2_Mm2 SINE B2 155 193 -2 2 1402 240 311 48 19 chr3 107150951 107151056 -52448727 + PB1D10 SINE Alu 10 117 0 2 1402 686 272 140 35 chr3 107151097 107151469 -52448314 - MLT2B4 LTR ERVL -90 466 4 2 1402 686 54 0 0 chr3 107151582 107151675 -52448108 + B1_Mus2 SINE Alu 55 147 0 2 1402 585 265 84 22 chr3 107152019 107152269 -52447514 - MLT1H1 LTR MaLR -291 264 36 2 1402 3573 164 92 8 chr3 107152281 107153023 -52446760 - RLTR40 LTR ERVK -13 804 1 2 1402 1247 34 0 0 chr3 107153287 107153434 -52446349 - B1_Mm SINE Alu 0 147 1 2 1402 638 192 81 43 chr3 107153457 107153642 -52446141 - B2_Mm2 SINE B2 -1 194 3 2 1402 562 357 75 32 chr3 107153875 107154156 -52445627 - LTR16A LTR ERVL -9 442 150 2 1402 378 0 0 0 chr3 107154274 107154316 -52445467 + (TG)n Simple_repeat Simple_repeat 2 43 0 2 1402 624 213 52 32 chr3 107154328 107154483 -52445300 - RSINE1 SINE B4 -6 159 2 2 1402 261 139 0 0 chr3 107155425 107155468 -52444315 + (TA)n Simple_repeat Simple_repeat 1 43 0 2 1402 241 333 56 0 chr3 107155468 107155540 -52444243 - ID4_ SINE ID -5 78 3 2 1402 501 260 66 13 chr3 107155625 107155819 -52443964 - MIR SINE MIR -2 260 60 2 1402 704 175 16 0 chr3 107156585 107156711 -52443072 + B1_Mur2 SINE Alu 1 128 -21 2 1402 514 28 0 27 chr3 107156713 107156787 -52442996 + (GGA)n Simple_repeat Simple_repeat 1 72 0 2 1402 678 122 0 0 chr3 107156780 107156887 -52442896 + (GAAA)n Simple_repeat Simple_repeat 4 110 0 2 1402 249 324 94 9 chr3 107157657 107157763 -52442020 + PB1D10 SINE Alu 1 115 -2 2 1402 496 326 14 18 chr3 107158201 107158400 -52441383 + MTD LTR MaLR 2 178 -241 2 1402 1256 34 0 7 chr3 107158410 107158559 -52441224 + B1_Mus1 SINE Alu 1 148 0 2 1402 285 146 0 0 chr3 107158561 107158609 -52441174 + (GAAA)n Simple_repeat Simple_repeat 2 49 0 2 1402 354 23 0 0 chr3 107158618 107158661 -52441122 + (CAGA)n Simple_repeat Simple_repeat 2 44 0 2 1402 210 71 0 0 chr3 107158747 107158775 -52441008 + (A)n Simple_repeat Simple_repeat 1 28 0 2 1402 271 279 34 23 chr3 107158786 107158874 -52440909 + MTD LTR MaLR 292 380 -39 2 1402 395 277 65 78 chr3 107158909 107159062 -52440721 - B4A SINE B4 -127 165 15 2 1402 1028 69 6 0 chr3 107160505 107160664 -52439119 + (TG)n Simple_repeat Simple_repeat 2 161 0 2 1402 301 211 42 0 chr3 107160719 107160790 -52438993 - PB1D7 SINE Alu 0 120 47 3 1402 199 328 125 8 chr3 107161061 107161181 -52438602 + MIRb SINE MIR 20 153 -115 3 1402 894 262 137 13 chr3 107161622 107162001 -52437782 + L1MA7 LINE L1 5845 6270 -21 3 1402 362 296 48 27 chr3 107162493 107162639 -52437144 + MIR SINE MIR 14 162 -100 3 1402 1478 123 27 0 chr3 107162699 107162919 -52436864 - URR1A DNA MER1_type 0 226 1 3 1402 2251 140 117 7 chr3 107163858 107164310 -52435473 + RLTR28 LTR ERVL 2 503 -21 3 1402 185 296 55 102 chr3 107164971 107165099 -52434684 + MIR SINE MIR 86 207 -55 3 1402 372 272 72 44 chr3 107166373 107166554 -52433229 + MIRb SINE MIR 51 236 -32 3 1402 697 289 19 10 chr3 107168510 107168716 -52431067 + MER3 DNA MER1_type 1 208 -1 3 1402 216 0 0 0 chr3 107169032 107169056 -52430727 + (TTG)n Simple_repeat Simple_repeat 2 25 0 3 1402 255 31 0 0 chr3 107169716 107169748 -52430035 + (TC)n Simple_repeat Simple_repeat 2 33 0 3 1402 309 242 91 0 chr3 107170213 107170279 -52429504 - ID2 SINE ID -11 72 1 3 1402 204 40 0 0 chr3 107172143 107172168 -52427615 + (TTTG)n Simple_repeat Simple_repeat 3 27 0 3 1402 659 217 26 0 chr3 107172186 107172301 -52427482 - B1F SINE Alu -31 118 1 3 1402 394 318 127 15 chr3 107172603 107172826 -52426957 - MIRb SINE MIR -6 262 27 3 1402 414 123 14 20 chr3 107172827 107172951 -52426832 - B2_Mm2 SINE B2 0 195 36 3 1402 1314 96 11 0 chr3 107172967 107173144 -52426639 - B2_Mm1t SINE B2 -14 179 1 3 1402 270 0 0 0 chr3 107173184 107173214 -52426569 + (GAAA)n Simple_repeat Simple_repeat 1 30 0 3 1402 323 345 73 0 chr3 107173214 107173379 -52426404 + HAL1-3A_ME LINE L1 2284 2460 -398 3 1402 477 214 154 0 chr3 107173386 107173503 -52426280 + ID_B1 SINE B4 78 212 -12 3 1402 310 311 36 50 chr3 107173674 107173813 -52425970 + MIR SINE MIR 114 250 -12 3 1402 2400 138 7 70 chr3 107174794 107175206 -52424577 - ORR1B1 LTR MaLR -8 386 1 3 1402 368 341 1 1 chr3 107175449 107175575 -52424208 + MIRb SINE MIR 5 130 -146 3 1402 369 352 50 72 chr3 107176334 107176562 -52423221 + LTR33 LTR ERVL 48 267 -264 3 1402 198 103 0 0 chr3 107177109 107177138 -52422645 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 3 1402 607 270 36 0 chr3 107177160 107177297 -52422486 - RSINE1 SINE B4 -8 157 16 3 1402 409 300 80 43 chr3 107178787 107179177 -52420606 - MLT1B LTR MaLR 0 390 48 3 1402 502 314 36 0 chr3 107179241 107179381 -52420402 + B4A SINE B4 109 253 -39 3 1402 378 0 0 0 chr3 107179480 107179522 -52420261 + (CA)n Simple_repeat Simple_repeat 2 43 0 3 1402 22 0 0 0 chr3 107179603 107179625 -52420158 + AT_rich Low_complexity Low_complexity 1 22 0 3 1402 333 0 0 0 chr3 107179739 107179776 -52420007 + (TG)n Simple_repeat Simple_repeat 2 38 0 3 1402 3161 28 0 0 chr3 107179839 107180193 -52419590 + IAPEY2_LTR LTR ERVK 1 354 -3 3 1402 206 269 19 0 chr3 107180340 107180392 -52419391 - L2c LINE L2 0 3387 3335 3 1402 509 224 0 39 chr3 107181082 107181184 -52418599 + B1_Mur2 SINE Alu 21 118 -31 3 1402 386 203 29 0 chr3 107181184 107181253 -52418530 + B1F SINE Alu 69 139 -10 3 1402 272 188 0 14 chr3 107183146 107183216 -52416567 + GA-rich Low_complexity Low_complexity 4 72 0 3 1402 1255 281 68 58 chr3 107183963 107184465 -52415318 - Ricksha_c DNA MuDR -1158 890 384 3 1402 1382 76 43 0 chr3 107184544 107184728 -52415055 + B2_Mm2 SINE B2 2 193 -2 3 1402 573 267 66 16 chr3 107184792 107184975 -52414808 - MER53 DNA hAT 0 193 2 3 1402 260 204 19 0 chr3 107185046 107185100 -52414683 + B1_Mus2 SINE Alu 1 55 -92 3 1402 406 143 0 16 chr3 107185100 107185164 -52414619 + G-rich Low_complexity Low_complexity 5 67 0 3 1402 568 204 0 0 chr3 107185165 107185263 -52414520 + B1_Mur1 SINE Alu 42 139 -10 3 1402 301 272 225 0 chr3 107185555 107185724 -52414059 + MIR SINE MIR 46 252 -10 3 1402 390 323 108 0 chr3 107186266 107186396 -52413387 + MER117 DNA MER1_type 33 176 -21 3 1402 607 229 83 15 chr3 107186882 107187015 -52412768 + RSINE1 SINE B4 2 143 -22 3 1402 270 0 0 0 chr3 107187025 107187055 -52412728 + (CA)n Simple_repeat Simple_repeat 2 31 0 3 1402 362 213 0 0 chr3 107187064 107187125 -52412658 - RSINE1 SINE B4 -104 61 1 3 1402 937 264 121 63 chr3 107188162 107188542 -52411241 + MTE2b LTR MaLR 5 379 0 3 1402 1271 128 226 0 chr3 107188542 107188762 -52411021 - RLTR28 LTR ERVL -253 271 1 3 1402 462 308 19 0 chr3 107189978 107190082 -52409701 - PB1D10 SINE Alu -11 106 1 3 1402 212 149 43 0 chr3 107190135 107190182 -52409601 + (TTTG)n Simple_repeat Simple_repeat 4 52 0 3 1402 823 163 16 0 chr3 107190182 107190311 -52409472 - B1_Mur1 SINE Alu 0 149 19 3 1402 368 292 38 138 chr3 107190184 107190343 -52409440 - B4 SINE B4 -69 223 81 3 1402 1128 257 137 0 chr3 107191233 107191540 -52408243 - MTD LTR MaLR 0 419 71 3 1402 2464 132 51 2 chr3 107191946 107192340 -52407443 - MTC LTR MaLR -8 413 1 3 1402 2915 89 33 58 chr3 107192392 107192843 -52406940 + BGLII_B LTR ERVK 2 441 0 3 1402 1424 209 101 29 chr3 107193276 107193651 -52406132 + Lx8 LINE L1 7069 7470 -3 3 1402 600 152 0 0 chr3 107193784 107193902 -52405881 + CT-rich Low_complexity Low_complexity 1 118 0 3 1402 306 0 0 0 chr3 107193902 107193936 -52405847 + (TG)n Simple_repeat Simple_repeat 2 35 0 3 1402 477 173 0 0 chr3 107194012 107194139 -52405644 + CT-rich Low_complexity Low_complexity 2 128 0 3 1402 532 239 156 21 chr3 107194179 107194422 -52405361 - B4A SINE B4 -14 278 3 3 1402 332 267 56 0 chr3 107194429 107194519 -52405264 - L1M5 LINE L1 -493 5686 5592 3 1402 209 111 44 0 chr3 107194570 107194615 -52405168 + (CAGAGA)n Simple_repeat Simple_repeat 6 52 0 3 1402 643 277 143 39 chr3 107194624 107195064 -52404719 + L1ME1 LINE L1 5677 6162 -17 3 1402 312 27 0 0 chr3 107195412 107195449 -52404334 + (TG)n Simple_repeat Simple_repeat 1 37 0 3 1402 279 368 104 7 chr3 107196074 107196213 -52403570 + MIR SINE MIR 20 193 -75 3 1402 822 271 5 27 chr3 107197227 107197413 -52402370 - B3A SINE B2 0 198 17 3 1402 371 241 40 97 chr3 107197478 107197602 -52402181 - ID_B1 SINE B4 0 224 108 3 1402 797 251 50 36 chr3 107197626 107197845 -52401938 - ID_B1 SINE B4 0 224 3 3 1402 587 310 68 30 chr3 107197969 107198238 -52401545 + LTR48B LTR ERV1 123 374 -270 3 1402 301 204 0 48 chr3 107198256 107198421 -52401362 + CT-rich Low_complexity Low_complexity 2 158 0 3 1402 3122 23 2 138 chr3 107198454 107198905 -52400878 + RLTR10 LTR ERVK 1 390 0 3 1402 15861 25 30 40 chr3 107198915 107200878 -52398905 + RLTR10-int LTR ERVK 41 1984 -3 3 1402 2929 16 2 205 chr3 107200880 107201367 -52398416 + RLTR10 LTR ERVK 1 388 -2 3 1402 577 308 75 21 chr3 107201458 107201697 -52398086 + LTR48B LTR ERV1 123 374 -270 3 1402 301 201 0 50 chr3 107201745 107201995 -52397788 + CT-rich Low_complexity Low_complexity 1 237 0 3 1402 1029 75 75 0 chr3 107202413 107202547 -52397236 + B1_Mm SINE Alu 4 147 0 3 1402 272 275 14 14 chr3 107202769 107202839 -52396944 - RSINE1 SINE B4 -86 79 10 3 1402 594 149 7 30 chr3 107202782 107202910 -52396873 - B1_Mus1 SINE Alu -28 121 1 3 1402 1208 191 89 0 chr3 107203776 107204022 -52395761 - RCHARR1 DNA MER1_type -226 748 481 3 1402 5007 110 35 10 chr3 107204099 107204818 -52394965 + RMER19A LTR ERVK 1 737 0 3 1402 260 269 37 37 chr3 107204831 107204912 -52394871 - RCHARR1 DNA MER1_type -891 83 3 3 1402 435 38 0 0 chr3 107205301 107205354 -52394429 + (TC)n Simple_repeat Simple_repeat 2 54 0 3 1402 1342 108 0 20 chr3 107205374 107205573 -52394210 - B2_Mm2 SINE B2 0 195 1 3 1402 4802 134 70 0 chr3 107205628 107206418 -52393365 + L1_Mur3 LINE L1 4972 5816 -64 3 1402 7974 207 81 19 chr3 107206405 107207609 -52392174 - Lx7 LINE L1 -236 7460 6229 3 1402 414 0 0 0 chr3 107207609 107207655 -52392128 + (TC)n Simple_repeat Simple_repeat 1 46 0 3 1402 315 0 0 0 chr3 107207655 107207689 -52392094 + (CA)n Simple_repeat Simple_repeat 1 35 0 3 1402 7974 207 81 19 chr3 107207689 107208115 -52391668 - Lx7 LINE L1 -1468 6228 5739 3 1402 213 39 0 0 chr3 107208115 107208141 -52391642 + (TTCA)n Simple_repeat Simple_repeat 3 28 0 3 1402 7974 158 146 34 chr3 107208141 107209035 -52390748 - Lx7 LINE L1 -1958 5738 4726 3 1402 231 154 0 49 chr3 107209038 107209079 -52390704 - B2_Mm1t SINE B2 -154 39 1 3 1402 584 348 87 20 chr3 107209313 107209671 -52390112 - Charlie7 DNA MER1_type -837 1775 1394 3 1402 1691 302 82 63 chr3 107209744 107210462 -52389321 - Charlie7 DNA MER1_type -1347 1265 510 3 1402 1043 207 34 5 chr3 107210462 107210671 -52389112 + B3 SINE B2 2 216 0 3 1402 1691 302 82 63 chr3 107210671 107210738 -52389045 - Charlie7 DNA MER1_type -2103 509 469 3 1402 512 247 131 5 chr3 107210738 107210937 -52388846 - ID_B1 SINE B4 0 224 1 3 1402 1691 302 82 63 chr3 107210937 107211037 -52388746 - Charlie7 DNA MER1_type -2144 468 362 3 1402 420 231 0 0 chr3 107211069 107211147 -52388636 + ID4_ SINE ID 5 82 -1 3 1402 257 91 0 43 chr3 107212865 107212911 -52386872 + (TTTG)n Simple_repeat Simple_repeat 1 44 0 3 1402 268 248 36 187 chr3 107212911 107213050 -52386733 - PB1D9 SINE Alu -1 119 2 3 1402 392 341 22 87 chr3 107213050 107213133 -52386650 - B4A SINE B4 -221 71 1 3 1402 468 0 0 0 chr3 107213433 107213485 -52386298 + (TC)n Simple_repeat Simple_repeat 1 52 0 3 1402 453 36 0 0 chr3 107213485 107213539 -52386244 + (CA)n Simple_repeat Simple_repeat 1 55 0 3 1402 474 330 35 59 chr3 107213567 107213770 -52386013 + MLT1J LTR MaLR 221 418 -94 3 1402 497 208 40 0 chr3 107213795 107213896 -52385887 - B1F SINE Alu -8 141 37 3 1402 29 0 0 0 chr3 107214073 107214102 -52385681 + GC_rich Low_complexity Low_complexity 1 29 0 3 1402 357 310 0 33 chr3 107215259 107215379 -52384404 - L2b LINE L2 0 3375 3260 3 1402 180 0 0 0 chr3 107215905 107215925 -52383858 + (CAA)n Simple_repeat Simple_repeat 2 21 0 4 1403 1980 287 84 75 chr3 107217693 107218727 -52381056 + Lx9 LINE L1 6548 7591 -53 4 1403 27 0 0 0 chr3 107218750 107218777 -52381006 + AT_rich Low_complexity Low_complexity 1 27 0 4 1403 1447 244 6 24 chr3 107218777 107219113 -52380670 - 7SK RNA RNA -1 330 1 4 1403 1237 274 74 52 chr3 107220859 107221328 -52378455 - RMER5 LTR ERV1 -2 532 53 4 1403 908 183 167 5 chr3 107221328 107221520 -52378263 - URR1B DNA MER1_type 0 225 3 4 1403 1237 274 74 52 chr3 107221520 107221551 -52378232 - RMER5 LTR ERV1 -482 52 21 4 1403 281 309 174 33 chr3 107221985 107222169 -52377614 + MIRb SINE MIR 6 215 -53 4 1403 403 313 105 23 chr3 107222250 107222469 -52377314 + L1MB3 LINE L1 5587 5823 -360 4 1403 496 217 33 16 chr3 107222474 107222596 -52377187 + B1F SINE Alu 18 141 -8 4 1403 312 83 0 0 chr3 107222604 107222652 -52377131 + (T)n Simple_repeat Simple_repeat 1 48 0 4 1403 291 312 13 0 chr3 107222656 107222733 -52377050 + ID4_ SINE ID 4 81 -2 4 1403 351 0 0 0 chr3 107222762 107222801 -52376982 + (CA)n Simple_repeat Simple_repeat 2 40 0 4 1403 445 204 158 18 chr3 107222837 107223002 -52376781 + L1MB3 LINE L1 5963 6150 -33 4 1403 1001 203 42 33 chr3 107224653 107224867 -52374916 + B3 SINE B2 1 216 0 4 1403 583 221 25 94 chr3 107224870 107225030 -52374753 + B1_Mur4 SINE Alu 1 149 -1 4 1403 468 35 0 0 chr3 107225032 107225090 -52374693 + (TAGA)n Simple_repeat Simple_repeat 2 59 0 4 1403 2473 110 0 0 chr3 107225090 107225417 -52374366 + ORR1A2 LTR MaLR 1 327 0 4 1403 815 174 0 80 chr3 107225448 107225610 -52374173 + B1_Mur2 SINE Alu 1 149 0 4 1403 468 278 9 9 chr3 107225626 107225742 -52374041 + PB1D10 SINE Alu 1 116 -1 4 1403 300 228 34 43 chr3 107225757 107225888 -52373895 - Charlie5 DNA MER1_type -60 2564 2461 4 1403 301 319 44 9 chr3 107225897 107226011 -52373772 - LTR37B LTR ERV1 -350 118 1 4 1403 2385 11 0 0 chr3 107226235 107226499 -52373284 + L1Md_T LINE L1 6319 6582 0 4 1403 266 325 57 25 chr3 107228107 107228265 -52371518 - MIRb SINE MIR -70 198 36 4 1403 539 259 101 7 chr3 107228437 107228585 -52371198 - RSINE1 SINE B4 0 165 4 4 1403 265 250 0 0 chr3 107228945 107229005 -52370778 + RMER15 LTR ERVL 1 60 -515 4 1403 827 242 23 147 chr3 107229043 107229391 -52370392 + RMER15 LTR ERVL 15 319 -256 4 1403 789 234 0 113 chr3 107229386 107229598 -52370185 + B3 SINE B2 29 216 0 4 1403 192 231 25 13 chr3 107229967 107230046 -52369737 + CT-rich Low_complexity Low_complexity 3 82 0 4 1403 312 27 0 0 chr3 107230601 107230638 -52369145 + (TG)n Simple_repeat Simple_repeat 1 37 0 4 1403 203 299 27 55 chr3 107231047 107231137 -52368646 - MIRc SINE MIR -124 144 54 4 1403 261 211 18 55 chr3 107233860 107233970 -52365813 + CT-rich Low_complexity Low_complexity 2 107 0 4 1403 405 0 0 0 chr3 107234181 107234226 -52365557 + (TC)n Simple_repeat Simple_repeat 1 45 0 4 1403 612 299 0 113 chr3 107234551 107234773 -52365010 + B4A SINE B4 5 201 -91 4 1403 567 78 0 0 chr3 107234775 107234852 -52364931 + (GAAA)n Simple_repeat Simple_repeat 1 77 0 4 1403 277 373 37 58 chr3 107234857 107235045 -52364738 + B4 SINE B4 2 185 -107 4 1403 596 115 9 0 chr3 107237143 107237256 -52362527 + (TG)n Simple_repeat Simple_repeat 2 115 0 4 1403 1103 260 16 12 chr3 107237264 107237521 -52362262 - B4 SINE B4 -34 258 1 4 1403 378 0 0 0 chr3 107237800 107237842 -52361941 + (TG)n Simple_repeat Simple_repeat 2 43 0 4 1403 1129 81 0 36 chr3 107238219 107238385 -52361398 + B2_Mm2 SINE B2 2 161 -34 4 1403 297 0 0 0 chr3 107238385 107238418 -52361365 + (TAAA)n Simple_repeat Simple_repeat 1 33 0 4 1403 1212 56 0 0 chr3 107238608 107238752 -52361031 - B1_Mus2 SINE Alu -2 145 2 4 1403 551 244 55 0 chr3 107238773 107238900 -52360883 - RSINE1 SINE B4 -29 136 3 4 1403 216 0 0 0 chr3 107239332 107239356 -52360427 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 4 1403 326 325 41 24 chr3 107240050 107240125 -52359658 - MER45A DNA Tip100 -2 176 99 4 1403 3108 84 10 22 chr3 107240125 107240537 -52359246 + MTB_Mm LTR MaLR 1 407 0 4 1403 326 241 32 62 chr3 107240537 107240603 -52359180 - MER45A DNA Tip100 -80 98 36 4 1403 216 86 0 0 chr3 107242220 107242255 -52357528 + (TCTG)n Simple_repeat Simple_repeat 2 36 0 4 1403 198 0 0 0 chr3 107245760 107245782 -52354001 + (CAGA)n Simple_repeat Simple_repeat 1 22 0 4 1403 189 107 0 0 chr3 107247277 107247305 -52352478 + (GGGA)n Simple_repeat Simple_repeat 1 28 0 4 1403 1089 145 0 0 chr3 107251521 107251840 -52347943 + (TG)n Simple_repeat Simple_repeat 1 319 0 4 1403 993 158 177 10 chr3 107251848 107252040 -52347743 + URR1A DNA MER1_type 2 225 -1 4 1403 335 328 62 28 chr3 107252322 107252501 -52347282 + MER5A DNA MER1_type 5 189 0 4 1403 216 0 0 0 chr3 107254217 107254241 -52345542 + (T)n Simple_repeat Simple_repeat 1 24 0 4 1403 486 320 152 0 chr3 107255434 107255690 -52344093 - L2a LINE L2 -25 3401 3107 4 1403 207 283 32 0 chr3 107255743 107255825 -52343958 + MIRb SINE MIR 143 230 -38 4 1403 189 361 48 0 chr3 107256712 107256795 -52342988 + L2b LINE L2 3288 3374 -1 4 1403 250 311 148 6 chr3 107257753 107257915 -52341868 + MIRb SINE MIR 38 222 -46 4 1403 282 148 0 0 chr3 107261523 107261577 -52338206 + (CCG)n Simple_repeat Simple_repeat 2 55 0 4 1403 247 80 0 57 chr3 107261886 107261939 -52337844 + (GGA)n Simple_repeat Simple_repeat 1 50 0 4 1403 234 0 0 0 chr3 107264037 107264063 -52335720 + (T)n Simple_repeat Simple_repeat 1 26 0 4 1403 234 0 0 0 chr3 107264649 107264675 -52335108 + (A)n Simple_repeat Simple_repeat 1 26 0 4 1403 333 68 0 0 chr3 107265973 107266017 -52333766 + (TCC)n Simple_repeat Simple_repeat 1 44 0 4 1403 181 151 35 86 chr3 107266661 107266719 -52333064 - L3 LINE CR1 -3 4486 4432 4 1403 180 0 0 0 chr3 107266755 107266775 -52333008 + (CA)n Simple_repeat Simple_repeat 2 21 0 4 1403 546 63 0 0 chr3 107266775 107266854 -52332929 + (CAGAGA)n Simple_repeat Simple_repeat 6 84 0 4 1403 229 303 140 22 chr3 107267479 107267658 -52332125 + MIRc SINE MIR 9 208 -60 4 1403 478 327 117 53 chr3 107267682 107268103 -52331680 - MLT1G3 LTR MaLR -64 491 66 4 1403 218 252 330 0 chr3 107268465 107268568 -52331215 - MIRb SINE MIR -73 195 59 4 1403 239 262 78 70 chr3 107268860 107268975 -52330808 + MLT1H1 LTR MaLR 129 244 -351 4 1403 348 360 131 40 chr3 107268998 107269250 -52330533 + MLT1H1 LTR MaLR 276 550 -5 4 1403 315 49 0 0 chr3 107271765 107271806 -52327977 + (CA)n Simple_repeat Simple_repeat 2 42 0 4 1403 459 0 0 0 chr3 107272590 107272641 -52327142 + (TG)n Simple_repeat Simple_repeat 1 51 0 4 1403 228 224 0 43 chr3 107272728 107272798 -52326985 + (TCCA)n Simple_repeat Simple_repeat 1 67 0 4 1403 187 171 0 0 chr3 107274674 107274709 -52325074 + MIR SINE MIR 116 150 -58 4 1403 192 283 0 0 chr3 107274767 107274813 -52324970 + MIRc SINE MIR 109 154 -114 4 1403 587 296 108 36 chr3 107275452 107275729 -52324054 + Charlie4a DNA MER1_type 1 297 -211 4 1403 262 327 0 113 chr3 107277526 107277564 -52322219 + MT2B2 LTR ERVL 132 155 -429 4 1403 699 265 14 0 chr3 107277564 107277711 -52322072 + B1F SINE Alu 1 149 0 4 1403 189 306 109 58 chr3 107277937 107278093 -52321690 + MER5B DNA MER1_type 15 178 0 4 1403 301 318 0 36 chr3 107278410 107278445 -52321338 - BC1_Mm scRNA scRNA -41 111 6 4 1403 319 267 40 0 chr3 107278445 107278520 -52321263 - ID SINE ID -141 83 6 4 1403 312 316 125 26 chr3 107278865 107278901 -52320882 + MIRb SINE MIR 27 64 -204 4 1403 180 111 0 0 chr3 107278901 107278928 -52320855 + (CA)n Simple_repeat Simple_repeat 2 28 0 4 1403 312 316 125 26 chr3 107278928 107279083 -52320700 + MIRb SINE MIR 65 236 -32 4 1403 712 189 139 37 chr3 107279153 107279340 -52320443 + B3 SINE B2 2 207 -9 4 1403 357 24 0 0 chr3 107279354 107279396 -52320387 + (TAGA)n Simple_repeat Simple_repeat 3 44 0 4 1403 337 298 0 0 chr3 107280463 107280547 -52319236 + MIRb SINE MIR 85 168 -100 4 1403 247 294 68 0 chr3 107281217 107281380 -52318403 + (CAGTG)n Simple_repeat Simple_repeat 3 176 0 4 1403 235 301 68 0 chr3 107281469 107281632 -52318151 + (CAGTG)n Simple_repeat Simple_repeat 3 176 0 4 1403 213 158 0 137 chr3 107281558 107281763 -52318020 + (CAGG)n Simple_repeat Simple_repeat 4 180 0 4 1403 221 307 68 0 chr3 107281847 107282010 -52317773 + (CAGTG)n Simple_repeat Simple_repeat 3 176 0 4 1403 245 298 68 0 chr3 107282127 107282458 -52317325 + (CAGTG)n Simple_repeat Simple_repeat 1 353 0 4 1403 234 278 74 6 chr3 107282547 107282710 -52317073 + (CAGTG)n Simple_repeat Simple_repeat 3 176 0 4 1403 235 301 68 0 chr3 107282771 107282934 -52316849 + (CAGTG)n Simple_repeat Simple_repeat 3 176 0 4 1403 234 301 67 6 chr3 107283177 107283341 -52316442 + (CAGTG)n Simple_repeat Simple_repeat 3 176 0 4 1403 189 0 0 0 chr3 107284036 107284057 -52315726 + (TGGGGG)n Simple_repeat Simple_repeat 3 23 0 4 1403 708 45 0 0 chr3 107284673 107284761 -52315022 + (TG)n Simple_repeat Simple_repeat 1 88 0 4 1403 216 0 0 0 chr3 107284868 107284892 -52314891 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 4 1403 666 249 69 37 chr3 107284977 107285194 -52314589 - MER46C DNA MER2_type -56 282 59 4 1403 223 357 99 47 chr3 107287426 107287658 -52312125 + L2a LINE L2 1412 1655 -1764 4 1403 742 275 39 29 chr3 107287702 107288009 -52311774 - L1MB8 LINE L1 -51 6127 5818 4 1403 709 286 29 104 chr3 107288056 107288364 -52311419 - B4A SINE B4 -6 286 2 4 1403 496 317 34 0 chr3 107288366 107288574 -52311209 - L1MB8 LINE L1 -348 5830 5616 4 1403 340 316 48 63 chr3 107288671 107288706 -52311077 + L2a LINE L2 1820 1850 -1569 4 1403 585 0 0 0 chr3 107288706 107288771 -52311012 + (TC)n Simple_repeat Simple_repeat 2 66 0 4 1403 339 44 0 0 chr3 107288771 107288815 -52310968 + (TG)n Simple_repeat Simple_repeat 2 46 0 4 1403 340 316 48 63 chr3 107288815 107288984 -52310799 + L2a LINE L2 1851 2021 -1398 4 1403 975 296 171 12 chr3 107289072 107289664 -52310119 + L2a LINE L2 2171 2856 -563 4 1403 302 351 123 63 chr3 107289690 107290119 -52309664 + L2a LINE L2 2969 3423 -3 4 1403 289 257 150 73 chr3 107291396 107291557 -52308226 + L1M5 LINE L1 5528 5705 -535 4 1403 1302 228 167 11 chr3 107291557 107291917 -52307866 + MTD LTR MaLR 4 419 0 4 1403 289 257 150 73 chr3 107291917 107292041 -52307742 + L1M5 LINE L1 5706 5835 -405 4 1403 527 245 31 78 chr3 107292431 107292645 -52307138 + MLT1A1 LTR MaLR 221 461 -6 5 1403 377 345 20 7 chr3 107292935 107293084 -52306699 - Tigger12A DNA MER2_type -35 756 606 5 1403 282 116 0 0 chr3 107293909 107293952 -52305831 + (TGAA)n Simple_repeat Simple_repeat 2 44 0 5 1403 201 306 81 27 chr3 107294171 107294245 -52305538 + MIRm SINE MIR 170 247 -29 5 1403 283 337 68 11 chr3 107295002 107295179 -52304604 + MIR SINE MIR 1 187 -75 5 1403 360 0 0 0 chr3 107295334 107295374 -52304409 + (CAGA)n Simple_repeat Simple_repeat 4 43 0 5 1403 319 345 41 7 chr3 107295374 107295520 -52304263 + MIR3 SINE MIR 52 202 -6 5 1403 246 32 0 0 chr3 107300084 107300115 -52299668 + (CA)n Simple_repeat Simple_repeat 1 31 0 5 1403 294 226 71 51 chr3 107300911 107301009 -52298774 + MIR SINE MIR 22 121 -147 5 1403 1371 153 14 0 chr3 107301037 107301259 -52298524 + URR1B DNA MER1_type 1 225 0 5 1403 251 279 0 14 chr3 107301279 107301348 -52298435 + MADE2 DNA Mariner 1 68 -12 5 1403 445 306 121 43 chr3 107301430 107301686 -52298097 + ORR1E LTR MaLR 84 359 0 5 1403 1091 207 177 27 chr3 107301994 107302322 -52297461 + MTD LTR MaLR 35 411 -8 5 1403 269 372 30 55 chr3 107302557 107302759 -52297024 + MIRb SINE MIR 16 212 -56 5 1403 318 234 90 36 chr3 107302893 107303004 -52296779 - MIR SINE MIR -59 203 87 5 1403 548 237 256 29 chr3 107304096 107304195 -52295588 + MTEa LTR MaLR 1 120 -259 5 1403 468 0 0 0 chr3 107304195 107304247 -52295536 + (TG)n Simple_repeat Simple_repeat 1 52 0 5 1403 548 237 256 29 chr3 107304247 107304456 -52295327 + MTEa LTR MaLR 121 378 -1 5 1403 303 161 0 0 chr3 107306445 107306501 -52293282 + (TG)n Simple_repeat Simple_repeat 1 56 0 5 1403 219 304 48 102 chr3 107306632 107306910 -52292873 - L2b LINE L2 -37 3338 3083 5 1403 573 28 0 0 chr3 107306912 107306983 -52292800 + (CA)n Simple_repeat Simple_repeat 1 71 0 5 1403 462 79 0 0 chr3 107307483 107307546 -52292237 + (TG)n Simple_repeat Simple_repeat 2 64 0 5 1403 331 268 0 0 chr3 107307546 107307617 -52292166 - ID4 SINE ID -11 72 2 5 1403 264 59 0 0 chr3 107308191 107308225 -52291558 + (TG)n Simple_repeat Simple_repeat 2 35 0 5 1403 610 240 53 15 chr3 107308227 107308358 -52291425 - RSINE1 SINE B4 -29 136 1 5 1403 206 220 100 0 chr3 107308652 107308702 -52291081 + MIRm SINE MIR 110 164 -112 5 1403 27 49 0 0 chr3 107310161 107310202 -52289581 + AT_rich Low_complexity Low_complexity 1 41 0 5 1403 605 233 60 0 chr3 107310227 107310360 -52289423 - RSINE1 SINE B4 0 165 25 5 1403 2662 144 79 14 chr3 107312007 107312501 -52287282 - RLTR11A2 LTR ERVK 0 527 2 5 1403 330 386 20 7 chr3 107312865 107313040 -52286743 + MIRb SINE MIR 24 194 -82 5 1403 321 327 206 45 chr3 107313370 107313924 -52285859 - L2a LINE L2 -34 3392 2749 5 1403 24 53 0 0 chr3 107314170 107314208 -52285575 + AT_rich Low_complexity Low_complexity 1 38 0 5 1403 471 298 89 49 chr3 107316900 107317147 -52282636 + MIR SINE MIR 5 261 -1 5 1403 590 261 42 14 chr3 107317199 107317343 -52282440 + ID_B1 SINE B4 74 221 -3 5 1403 276 30 0 0 chr3 107317521 107317554 -52282229 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 5 1403 387 0 0 0 chr3 107317878 107317921 -52281862 + (CA)n Simple_repeat Simple_repeat 1 43 0 5 1403 818 133 32 11 chr3 107317961 107318108 -52281675 - B1_Mur4 SINE Alu -5 144 3 5 1403 363 210 54 107 chr3 107318009 107318121 -52281662 - MT2B LTR ERVL -344 257 152 5 1403 444 37 0 0 chr3 107318581 107318635 -52281148 + (CA)n Simple_repeat Simple_repeat 2 55 0 5 1403 185 272 98 15 chr3 107318772 107318854 -52280929 - MIR SINE MIR -56 152 68 5 1403 221 163 20 0 chr3 107319613 107319662 -52280121 + GA-rich Low_complexity Low_complexity 3 52 0 5 1403 201 152 0 0 chr3 107320869 107320902 -52278881 + (CGGAG)n Simple_repeat Simple_repeat 5 37 0 5 1403 336 333 50 0 chr3 107322135 107322255 -52277528 - L2a LINE L2 -1 3425 3300 5 1403 198 0 0 0 chr3 107322671 107322693 -52277090 + (CAAAAA)n Simple_repeat Simple_repeat 2 23 0 5 1403 318 345 62 18 chr3 107323702 107323929 -52275854 + L2 LINE L2 2534 2770 -649 5 1403 181 297 0 0 chr3 107324286 107324323 -52275460 + MIRm SINE MIR 160 196 -80 5 1403 245 345 48 0 chr3 107324859 107324943 -52274840 - MIR SINE MIR -93 169 82 5 1403 642 331 110 41 chr3 107325112 107325466 -52274317 + MLT1G1 LTR MaLR 5 420 -159 5 1403 213 214 0 0 chr3 107325585 107325627 -52274156 + (TTCA)n Simple_repeat Simple_repeat 3 44 0 5 1403 1111 223 5 0 chr3 107325632 107325838 -52273945 - B3 SINE B2 -9 207 1 5 1403 305 320 60 38 chr3 107326480 107326613 -52273170 - ORR1E LTR MaLR -223 136 1 5 1403 608 269 152 78 chr3 107326889 107327159 -52272624 + B4A SINE B4 3 292 0 5 1403 297 0 0 0 chr3 107327169 107327202 -52272581 + (CA)n Simple_repeat Simple_repeat 1 33 0 5 1403 225 0 0 0 chr3 107327202 107327226 -52272557 + (TC)n Simple_repeat Simple_repeat 1 25 0 5 1403 300 191 96 87 chr3 107328078 107328193 -52271590 + B3A SINE B2 3 118 -80 5 1403 291 299 137 68 chr3 107328193 107328297 -52271486 + B4A SINE B4 3 236 -56 5 1403 216 233 0 0 chr3 107328334 107328407 -52271376 + GA-rich Low_complexity Low_complexity 1 73 0 5 1403 253 236 13 77 chr3 107328516 107328594 -52271189 - MIR SINE MIR -20 242 170 5 1403 342 353 153 20 chr3 107329002 107329401 -52270382 + L1MC4a LINE L1 4580 5031 -1115 5 1403 484 261 14 0 chr3 107329414 107329556 -52270227 + L1M5 LINE L1 2985 3128 -3018 5 1403 240 213 82 0 chr3 107329650 107329711 -52270072 + PB1D10 SINE Alu 18 83 -34 5 1403 267 173 0 0 chr3 107329758 107329810 -52269973 + (ATTG)n Simple_repeat Simple_repeat 2 53 0 5 1403 855 197 0 0 chr3 107330234 107330412 -52269371 + GA-rich Low_complexity Low_complexity 3 180 0 5 1403 315 391 0 0 chr3 107330434 107330567 -52269216 + L1MC4a LINE L1 5761 5893 -1989 5 1403 208 319 10 52 chr3 107331072 107331168 -52268615 + MIRb SINE MIR 118 209 -59 5 1403 424 240 123 55 chr3 107332043 107332206 -52267577 - MIR3 SINE MIR 0 208 35 5 1403 184 184 26 26 chr3 107332346 107332385 -52267398 + L3 LINE CR1 840 878 -3611 5 1403 206 118 0 0 chr3 107332619 107332653 -52267130 + (A)n Simple_repeat Simple_repeat 1 34 0 5 1403 390 298 0 0 chr3 107332653 107332737 -52267046 - PB1D10 SINE Alu -13 104 21 5 1403 420 55 0 0 chr3 107333217 107333272 -52266511 + (CA)n Simple_repeat Simple_repeat 1 55 0 5 1403 326 310 85 0 chr3 107333672 107333801 -52265982 + MIRb SINE MIR 36 175 -93 5 1403 209 315 0 0 chr3 107334159 107334213 -52265570 - MIRb SINE MIR -159 109 56 5 1403 645 321 49 52 chr3 107334220 107334585 -52265198 - ORR1D2 LTR MaLR 0 370 7 5 1403 596 214 30 38 chr3 107334808 107334939 -52264844 + B1F SINE Alu 3 132 -17 5 1403 1347 246 45 35 chr3 107334949 107335355 -52264428 - MTE2b LTR MaLR 0 419 11 5 1403 622 257 114 31 chr3 107335363 107335556 -52264227 + ID_B1 SINE B4 4 212 -12 5 1403 296 354 105 6 chr3 107335711 107335873 -52263910 - MIR SINE MIR -75 187 10 5 1403 649 162 108 0 chr3 107336090 107336201 -52263582 + RSINE1 SINE B4 43 165 0 5 1403 333 242 200 0 chr3 107336224 107336319 -52263464 + HAL1-3A_ME LINE L1 1976 2089 -769 5 1403 278 308 83 25 chr3 107336346 107336466 -52263317 - ORR1E LTR MaLR -214 145 19 5 1403 195 302 82 36 chr3 107336482 107336592 -52263191 - MIRb SINE MIR -146 122 8 5 1403 550 319 32 0 chr3 107337045 107337202 -52262581 + RSINE1 SINE B4 4 165 0 5 1403 1459 64 11 11 chr3 107337645 107337835 -52261948 - B2_Mm2 SINE B2 -4 191 2 5 1403 742 145 26 0 chr3 107338230 107338347 -52261436 + PB1D9 SINE Alu 1 120 0 5 1403 684 277 58 15 chr3 107338413 107338618 -52261165 - MIR SINE MIR -5 257 44 5 1403 180 299 78 49 chr3 107339207 107339309 -52260474 - MIR SINE MIR -82 126 22 5 1403 469 244 60 52 chr3 107339337 107339471 -52260312 + B1F SINE Alu 8 142 -7 5 1403 682 149 13 26 chr3 107339604 107339838 -52259945 + CT-rich Low_complexity Low_complexity 1 231 0 5 1403 216 192 19 0 chr3 107340094 107340146 -52259637 + (CCTG)n Simple_repeat Simple_repeat 1 53 0 5 1403 203 229 45 76 chr3 107341008 107341074 -52258709 + L2a LINE L2 3286 3349 -77 5 1403 276 301 182 11 chr3 107341074 107341143 -52258640 - ERVL-E-int LTR ERVL -204 5463 5385 5 1403 2219 144 78 56 chr3 107341143 107341554 -52258229 + MTC LTR MaLR 2 421 0 5 1403 276 301 182 11 chr3 107341554 107341759 -52258024 - ERVL-E-int LTR ERVL -283 5384 5143 5 1403 1730 222 157 24 chr3 107342551 107342890 -52256893 + MT2B LTR ERVL 1 403 -198 5 1403 1029 8 0 0 chr3 107342890 107343008 -52256775 + (TTC)n Simple_repeat Simple_repeat 1 118 0 5 1403 1730 222 157 24 chr3 107343008 107343171 -52256612 + MT2B LTR ERVL 404 570 -31 5 1403 220 216 0 0 chr3 107343171 107343222 -52256561 + (TAGA)n Simple_repeat Simple_repeat 2 52 0 5 1403 281 167 0 0 chr3 107343227 107343275 -52256508 + MT2B LTR ERVL 537 584 0 5 1403 371 298 184 31 chr3 107343677 107343926 -52255857 - MLT2C2 LTR ERVL -63 334 57 5 1403 481 290 69 29 chr3 107343780 107343959 -52255824 - MLT1E3 LTR MaLR -370 284 43 5 1403 730 256 30 10 chr3 107343961 107344243 -52255540 + L1MA4 LINE L1 5645 5930 -373 5 1403 1540 108 4 26 chr3 107344313 107344542 -52255241 - URR1A DNA MER1_type -2 224 1 5 1403 226 282 118 30 chr3 107344676 107344811 -52254972 - MLT2F LTR ERVL -515 148 2 5 1403 385 337 39 69 chr3 107345000 107345050 -52254733 - B3 SINE B2 -17 199 152 5 1403 513 47 0 0 chr3 107345050 107345114 -52254669 + (TG)n Simple_repeat Simple_repeat 1 64 0 5 1403 387 315 55 51 chr3 107345114 107345267 -52254516 - B3A SINE B2 -65 151 2 5 1403 262 261 188 0 chr3 107345485 107345554 -52254229 - ID4_ SINE ID 0 83 2 6 1403 253 224 194 0 chr3 107345571 107345638 -52254145 - PB1 SINE Alu -16 111 32 6 1403 369 319 77 12 chr3 107345659 107345827 -52253956 - MamGypLTR1b LTR Gypsy -50 732 554 6 1403 191 247 14 0 chr3 107345828 107345901 -52253882 + GA-rich Low_complexity Low_complexity 2 75 0 6 1403 263 266 16 0 chr3 107345921 107345938 -52253845 + B4 SINE B4 70 87 -205 6 1403 590 221 107 0 chr3 107345938 107346041 -52253742 + B1_Mus2 SINE Alu 3 115 -32 6 1403 327 25 0 0 chr3 107346041 107346081 -52253702 + (CA)n Simple_repeat Simple_repeat 2 41 0 6 1403 590 221 107 0 chr3 107346081 107346108 -52253675 + B1_Mus2 SINE Alu 116 146 -1 6 1403 637 141 16 8 chr3 107346111 107346233 -52253550 + GA-rich Low_complexity Low_complexity 3 125 0 6 1403 318 343 122 17 chr3 107346399 107346580 -52253203 + MLT1N2 LTR MaLR 349 548 -14 6 1403 746 273 19 7 chr3 107347060 107347215 -52252568 - RSINE1 SINE B4 -4 161 5 6 1403 1057 249 22 0 chr3 107347213 107347442 -52252341 - B4A SINE B4 -58 234 1 6 1403 279 303 64 9 chr3 107347841 107347951 -52251832 + MLT1N2 LTR MaLR 432 547 -15 6 1404 233 229 45 143 chr3 107348615 107348727 -52251056 + RLTR30 LTR ERV1 47 147 -232 6 1404 736 237 7 0 chr3 107349489 107349628 -52250155 - B1F1 SINE Alu -9 140 1 6 1404 183 129 0 0 chr3 107350393 107350424 -52249359 + (GACTG)n Simple_repeat Simple_repeat 5 35 0 6 1404 593 279 85 101 chr3 107350911 107351286 -52248497 + MLT1F2 LTR MaLR 25 393 -167 6 1404 251 301 153 57 chr3 107351366 107351388 -52248395 - B3 SINE B2 -13 203 11 6 1404 751 248 32 32 chr3 107351388 107351542 -52248241 - RSINE1 SINE B4 0 165 12 6 1404 1410 72 16 16 chr3 107351663 107351847 -52247936 + B2_Mm2 SINE B2 1 184 -11 6 1404 261 288 86 81 chr3 107352034 107352208 -52247575 - MIR3 SINE MIR -24 184 10 6 1404 425 288 18 9 chr3 107353056 107353168 -52246615 + PB1D10 SINE Alu 3 115 -2 6 1404 1451 115 18 9 chr3 107353256 107353476 -52246307 + URR1A DNA MER1_type 1 222 -4 6 1404 271 297 0 86 chr3 107353597 107353678 -52246105 + MLT1A1 LTR MaLR 47 120 -288 6 1404 397 214 33 11 chr3 107353674 107353764 -52246019 + B4 SINE B4 146 237 -55 6 1404 1149 144 0 0 chr3 107353832 107354147 -52245636 + (CA)n Simple_repeat Simple_repeat 1 315 0 6 1404 258 32 0 0 chr3 107354160 107354191 -52245592 + (CA)n Simple_repeat Simple_repeat 1 31 0 6 1404 994 263 26 66 chr3 107354246 107354577 -52245206 - ORR1E LTR MaLR -90 304 2 6 1404 383 137 14 0 chr3 107357304 107357377 -52242406 + CT-rich Low_complexity Low_complexity 1 74 0 6 1404 199 334 44 69 chr3 107359316 107359609 -52240174 + L2a LINE L2 3058 3363 -12 6 1404 270 0 0 0 chr3 107361311 107361341 -52238442 + (CCA)n Simple_repeat Simple_repeat 2 31 0 6 1404 201 292 11 22 chr3 107361517 107361608 -52238175 + GA-rich Low_complexity Low_complexity 6 95 0 6 1404 1514 133 0 4 chr3 107365996 107366222 -52233561 + URR1B DNA MER1_type 1 225 0 6 1404 517 302 34 30 chr3 107366291 107366481 -52233302 - MIR SINE MIR -35 233 31 6 1404 291 273 0 25 chr3 107366897 107366976 -52232807 + C-rich Low_complexity Low_complexity 2 78 0 6 1404 4084 57 18 2 chr3 107367270 107367783 -52232000 - L1_Mus3 LINE L1 0 6638 6118 6 1404 333 0 0 0 chr3 107369054 107369091 -52230692 + (TG)n Simple_repeat Simple_repeat 1 37 0 6 1404 725 33 11 0 chr3 107369173 107369265 -52230518 + (CTTTG)n Simple_repeat Simple_repeat 2 94 0 6 1404 577 231 72 65 chr3 107369265 107369394 -52230389 - B4 SINE B4 -76 216 85 6 1404 836 133 29 7 chr3 107369410 107369546 -52230237 + B1_Mur2 SINE Alu 11 149 0 6 1404 258 286 0 0 chr3 107369546 107369602 -52230181 - B4 SINE B4 -217 75 20 6 1404 274 266 112 26 chr3 107373409 107373525 -52226258 + MIR3 SINE MIR 7 132 -76 6 1404 1025 89 99 17 chr3 107373661 107373833 -52225950 + B2_Mm2 SINE B2 2 187 -8 6 1404 626 196 9 0 chr3 107373951 107374058 -52225725 - B1_Mur2 SINE Alu -27 122 15 6 1404 321 26 0 0 chr3 107374064 107374102 -52225681 + (TCTG)n Simple_repeat Simple_repeat 1 38 0 6 1404 625 151 96 48 chr3 107374124 107374249 -52225534 - B3A SINE B2 -67 131 1 6 1404 788 161 117 28 chr3 107374267 107374446 -52225337 - B2_Mm2 SINE B2 0 195 1 6 1404 308 249 216 10 chr3 107374687 107374886 -52224897 + L1MCa LINE L1 1431 1670 -4838 6 1404 258 316 135 45 chr3 107374886 107375174 -52224609 - L2a LINE L2 -171 3255 2942 6 1404 619 179 276 12 chr3 107375384 107375554 -52224229 - B3 SINE B2 -1 215 1 6 1404 236 267 196 51 chr3 107375575 107375713 -52224070 - L2a LINE L2 -609 2810 2653 6 1404 5775 66 21 5 chr3 107376392 107377879 -52221904 + L1VL2 LINE L1 291 1812 -1803 6 1404 1490 42 0 91 chr3 107377879 107378089 -52221694 - B2_Mm1a SINE B2 -2 191 1 6 1404 5775 80 29 9 chr3 107378089 107378110 -52221673 + L1VL2 LINE L1 1813 1826 -1789 6 1404 305 274 0 0 chr3 107378254 107378327 -52221456 - PB1D10 SINE Alu -2 115 43 6 1404 379 153 12 0 chr3 107378551 107378632 -52221151 - B2_Mm2 SINE B2 -86 130 47 6 1404 1250 70 52 6 chr3 107378677 107378849 -52220934 - B2_Mm1t SINE B2 -12 181 2 6 1404 22 103 0 0 chr3 107379300 107379378 -52220405 + AT_rich Low_complexity Low_complexity 1 78 0 6 1404 21 57 0 0 chr3 107379531 107379566 -52220217 + AT_rich Low_complexity Low_complexity 1 35 0 6 1404 236 194 83 0 chr3 107379669 107379741 -52220042 + L1M2 LINE L1 2745 2822 -3321 6 1404 438 350 80 38 chr3 107379753 107380041 -52219742 + MER113 DNA MER1_type 219 518 -3 6 1404 236 300 42 28 chr3 107381233 107381305 -52218478 - MER81 DNA AcHobo -5 109 37 6 1404 225 333 33 22 chr3 107381420 107381512 -52218271 - L2b LINE L2 -20 3355 3263 6 1404 991 136 223 0 chr3 107382329 107382513 -52217270 - URR1B DNA MER1_type 0 225 1 6 1404 926 233 19 5 chr3 107382886 107383093 -52216690 - B3 SINE B2 -6 210 1 6 1404 257 113 0 46 chr3 107383107 107383172 -52216611 + T-rich Low_complexity Low_complexity 1 62 0 6 1404 600 14 0 0 chr3 107384961 107385030 -52214753 + (TC)n Simple_repeat Simple_repeat 1 69 0 6 1404 348 24 0 0 chr3 107385675 107385716 -52214067 + (CA)n Simple_repeat Simple_repeat 1 41 0 6 1404 256 238 112 56 chr3 107388586 107388675 -52211108 - MER5A DNA MER1_type -89 100 7 6 1404 198 0 0 0 chr3 107388981 107389003 -52210780 + (CCCTAA)n Simple_repeat Simple_repeat 1 22 0 6 1404 213 180 40 0 chr3 107390188 107390238 -52209545 + (CA)n Simple_repeat Simple_repeat 2 53 0 6 1404 185 269 29 29 chr3 107391364 107391433 -52208350 + L3 LINE CR1 2623 2691 -1798 6 1404 396 310 23 4 chr3 107391820 107391952 -52207831 + PB1D7 SINE Alu 1 129 -20 6 1404 298 250 44 0 chr3 107392113 107392181 -52207602 + MLT1F1 LTR MaLR 289 359 -189 6 1404 314 243 62 48 chr3 107392196 107392336 -52207447 + MLT1F1 LTR MaLR 425 566 -3 6 1404 432 164 9 18 chr3 107393860 107393972 -52205811 + (TA)n Simple_repeat Simple_repeat 1 111 0 6 1404 1304 100 44 0 chr3 107394875 107395055 -52204728 - B2_Mm2 SINE B2 -7 188 1 6 1404 23 0 0 0 chr3 107395076 107395099 -52204684 + AT_rich Low_complexity Low_complexity 1 23 0 6 1404 240 286 14 0 chr3 107395601 107395671 -52204112 + MIR SINE MIR 132 202 -60 6 1404 29 60 0 0 chr3 107397958 107398008 -52201775 + GC_rich Low_complexity Low_complexity 1 50 0 6 1404 555 16 0 0 chr3 107400034 107400098 -52199685 + (GGAA)n Simple_repeat Simple_repeat 2 65 0 6 1404 25 0 0 0 chr3 107400382 107400407 -52199376 + GC_rich Low_complexity Low_complexity 1 25 0 6 1404 330 34 68 0 chr3 107401855 107401914 -52197869 + (TTTTG)n Simple_repeat Simple_repeat 2 64 0 6 1404 514 228 25 94 chr3 107405124 107405284 -52194499 - B1F SINE Alu 0 149 1 6 1404 645 283 0 14 chr3 107405883 107406023 -52193760 - ID_B1 SINE B4 -2 222 85 6 1404 1669 31 0 20 chr3 107406073 107406270 -52193513 - B2_Mm1t SINE B2 0 193 1 6 1404 21 0 0 0 chr3 107406271 107406292 -52193491 + AT_rich Low_complexity Low_complexity 1 21 0 6 1404 234 91 0 0 chr3 107406408 107406441 -52193342 + (GA)n Simple_repeat Simple_repeat 2 34 0 6 1404 23 0 0 0 chr3 107408662 107408685 -52191098 + AT_rich Low_complexity Low_complexity 1 23 0 6 1404 1051 240 48 28 chr3 107409788 107410037 -52189746 - MTEa LTR MaLR -1 378 125 6 1404 230 270 32 0 chr3 107411333 107411396 -52188387 + MIRm SINE MIR 182 246 -30 6 1404 279 258 169 32 chr3 107411680 107411804 -52187979 + B1F1 SINE Alu 1 141 -8 6 1404 243 315 14 116 chr3 107412028 107412175 -52187608 + MT2B2 LTR ERVL 151 282 -302 6 1404 598 270 17 43 chr3 107412043 107412199 -52187584 + ID_B1 SINE B4 80 234 -58 6 1404 260 316 12 25 chr3 107412199 107412280 -52187503 + ID4 SINE ID 4 83 0 6 1404 347 285 29 73 chr3 107412519 107412679 -52187104 + MIR SINE MIR 6 164 -98 6 1404 1427 239 66 30 chr3 107412686 107413052 -52186731 - MTEb LTR MaLR 0 379 1 6 1404 2787 186 148 56 chr3 107413178 107413929 -52185854 - RMER13A LTR ERVK -39 821 2 6 1404 688 245 179 0 chr3 107415234 107415418 -52184365 - ID_B1 SINE B4 -7 217 1 6 1404 263 274 157 0 chr3 107421500 107421602 -52178181 + PB1D7 SINE Alu 1 118 -2 6 1404 212 229 40 13 chr3 107421626 107421709 -52178074 - MIR SINE MIR -51 157 83 6 1404 234 296 27 40 chr3 107421792 107421866 -52177917 + LTR78 LTR ERV1 214 286 -1018 6 1404 1379 82 16 16 chr3 107422152 107422339 -52177444 + B2_Mm2 SINE B2 1 187 -8 6 1404 875 129 13 60 chr3 107423697 107423846 -52175937 - B1_Mur3 SINE Alu -7 142 1 6 1404 503 230 151 0 chr3 107425247 107425373 -52174410 + B1F2 SINE Alu 1 145 -4 6 1404 186 71 0 0 chr3 107425376 107425404 -52174379 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 6 1404 321 148 0 53 chr3 107426132 107426189 -52173594 - PB1D9 SINE Alu -6 114 61 7 1404 563 337 78 37 chr3 107426270 107426541 -52173242 + B4A SINE B4 3 284 -8 7 1404 888 111 71 23 chr3 107426633 107426814 -52172969 + B3 SINE B2 2 194 -1 7 1404 308 257 14 41 chr3 107426833 107426906 -52172877 + ID4_ SINE ID 13 83 0 7 1404 347 322 101 28 chr3 107426973 107427152 -52172631 - MER2 DNA MER2_type -10 335 144 7 1404 336 248 102 28 chr3 107427704 107427812 -52171971 + PB1D10 SINE Alu 2 117 0 7 1404 429 316 50 56 chr3 107428782 107428943 -52170840 + MIR SINE MIR 3 162 -100 7 1404 492 191 10 21 chr3 107429060 107429156 -52170627 - B1F1 SINE Alu -2 147 53 7 1404 276 323 15 0 chr3 107431813 107431878 -52167905 + ID2 SINE ID 7 72 -11 7 1404 322 329 0 0 chr3 107432032 107432111 -52167672 + ID4_ SINE ID 3 81 -2 7 1404 504 214 17 26 chr3 107432303 107432418 -52167365 - PB1D10 SINE Alu -3 114 1 7 1404 391 277 0 0 chr3 107432631 107432714 -52167069 + ID4 SINE ID 1 83 0 7 1404 834 120 43 43 chr3 107432725 107432864 -52166919 + B1_Mur3 SINE Alu 11 149 0 7 1404 754 222 87 22 chr3 107432998 107433182 -52166601 - B3A SINE B2 -1 197 2 7 1404 1158 51 0 7 chr3 107435206 107435345 -52164438 + B1_Mm SINE Alu 1 138 -9 7 1404 714 34 0 0 chr3 107435355 107435444 -52164339 + (GA)n Simple_repeat Simple_repeat 2 90 0 7 1404 264 284 64 9 chr3 107435508 107435618 -52164165 - L2a LINE L2 -62 3364 3249 7 1404 259 164 0 32 chr3 107436265 107436328 -52163455 + CT-rich Low_complexity Low_complexity 1 61 0 7 1404 638 25 12 0 chr3 107436540 107436620 -52163163 + (TTTC)n Simple_repeat Simple_repeat 4 84 0 7 1404 1053 61 15 0 chr3 107436630 107436761 -52163022 - B1_Mus2 SINE Alu -12 135 3 7 1404 259 245 9 67 chr3 107436822 107436927 -52162856 - MER31-int LTR ERV1 -898 4458 4360 7 1404 393 75 0 0 chr3 107436932 107436985 -52162798 + (TG)n Simple_repeat Simple_repeat 1 53 0 7 1404 302 292 24 24 chr3 107437093 107437216 -52162567 - MER31-int LTR ERV1 -941 3995 3873 7 1404 464 245 172 24 chr3 107437670 107437744 -52162039 - MER31-int LTR ERV1 -3509 1427 1342 7 1404 450 252 101 29 chr3 107437744 107437883 -52161900 - B1F1 SINE Alu 0 149 1 7 1404 464 245 172 24 chr3 107437883 107438105 -52161678 - MER31-int LTR ERV1 -3595 1341 1087 7 1404 281 100 20 0 chr3 107438409 107438459 -52161324 + (TG)n Simple_repeat Simple_repeat 2 52 0 7 1404 254 290 0 0 chr3 107438494 107438563 -52161220 - ID4_ SINE ID -14 69 1 7 1404 398 225 33 8 chr3 107438935 107439056 -52160727 - MER31-int LTR ERV1 -4594 342 219 7 1404 258 156 0 0 chr3 107439226 107439271 -52160512 + GA-rich Low_complexity Low_complexity 2 46 0 7 1404 1085 286 68 26 chr3 107439275 107439584 -52160199 - MTEa LTR MaLR -55 324 3 7 1404 2432 192 74 27 chr3 107439797 107440348 -52159435 + Lx9 LINE L1 7063 7639 -5 7 1404 332 352 27 49 chr3 107440351 107440536 -52159247 - MER31A LTR ERV1 -9 476 296 7 1404 1392 231 106 61 chr3 107440669 107441065 -52158718 + MTD LTR MaLR 5 418 -1 7 1404 4699 68 0 16 chr3 107441223 107441835 -52157948 - L1Md_F2 LINE L1 -3 6579 5978 7 1404 18047 61 15 10 chr3 107441835 107442370 -52157413 - L1Md_F LINE L1 -55 5828 5294 7 1404 1658 32 0 0 chr3 107442370 107442558 -52157225 - B2_Mm1a SINE B2 -5 188 1 7 1404 18047 61 15 10 chr3 107442558 107443626 -52156157 - L1Md_F LINE L1 -590 5293 4220 7 1404 1455 79 10 26 chr3 107443626 107443820 -52155963 - B2_Mm2 SINE B2 -4 191 1 7 1404 30253 74 23 3 chr3 107443820 107447562 -52152221 - L1Md_F LINE L1 -1664 4219 410 7 1404 526 235 25 5 chr3 107447586 107447723 -52152060 - B1F1 SINE Alu -7 142 1 7 1404 557 89 0 19 chr3 107447755 107447858 -52151925 + (TCTCTG)n Simple_repeat Simple_repeat 2 102 0 7 1404 864 208 173 9 chr3 107447879 107448093 -52151690 - RMER1B Other Other -13 1053 805 7 1404 24 0 0 0 chr3 107448250 107448274 -52151509 + AT_rich Low_complexity Low_complexity 1 24 0 7 1404 242 268 36 0 chr3 107448531 107448587 -52151196 - ID_B1 SINE B4 -7 217 160 7 1404 585 179 129 8 chr3 107448566 107448690 -52151093 - MT2A LTR ERVL -310 223 85 7 1404 1953 138 21 25 chr3 107448705 107449032 -52150751 + ORR1A4 LTR MaLR 1 326 -3 7 1404 733 179 43 36 chr3 107449032 107449165 -52150618 + B1_Mur3 SINE Alu 14 148 -1 7 1404 596 149 0 11 chr3 107449175 107449270 -52150513 - MT2A LTR ERVL -439 94 1 7 1404 775 173 150 25 chr3 107449309 107449469 -52150314 - B2_Mm2 SINE B2 -14 181 2 7 1404 769 283 78 70 chr3 107449914 107450286 -52149497 + MTE2a LTR MaLR 5 379 0 7 1404 233 317 52 52 chr3 107450312 107450465 -52149318 - L2 LINE L2 -849 2570 2418 7 1404 468 254 8 33 chr3 107450611 107450733 -52149050 + Lx6 LINE L1 6245 6363 -687 7 1404 861 287 93 56 chr3 107450764 107451324 -52148459 + Lx6 LINE L1 6503 7434 -26 7 1404 913 134 7 0 chr3 107451628 107451777 -52148006 - RMER19A LTR ERVK -587 150 1 7 1404 401 277 30 48 chr3 107451780 107451947 -52147836 - RNLTR23 LTR ERVK 0 642 479 7 1404 289 279 152 40 chr3 107452653 107452841 -52146942 - RLTR25B LTR ERVK 0 1028 819 7 1404 357 24 0 0 chr3 107452841 107452883 -52146900 + (CA)n Simple_repeat Simple_repeat 1 42 0 7 1404 209 246 36 18 chr3 107452934 107453046 -52146737 + (CA)n Simple_repeat Simple_repeat 2 115 0 7 1404 234 339 52 119 chr3 107454291 107454425 -52145358 - MLT1F2 LTR MaLR -20 540 416 7 1404 282 233 44 124 chr3 107454422 107454559 -52145224 - MER31B LTR ERV1 -6 460 335 7 1404 271 267 13 13 chr3 107454551 107454627 -52145156 - RMER5 LTR ERV1 -9 525 450 7 1404 198 71 0 0 chr3 107454718 107454746 -52145037 + (TTTTTG)n Simple_repeat Simple_repeat 2 29 0 7 1404 877 9 36 0 chr3 107455203 107455315 -52144468 + (TCTA)n Simple_repeat Simple_repeat 2 117 0 7 1404 3303 103 9 0 chr3 107455315 107455742 -52144041 - RLTR10C LTR ERVK -4 432 2 7 1404 522 0 0 0 chr3 107455742 107455800 -52143983 + (TCTA)n Simple_repeat Simple_repeat 4 61 0 7 1404 1146 88 0 12 chr3 107455800 107455962 -52143821 - B2_Mm2 SINE B2 -35 160 1 7 1404 1423 224 70 8 chr3 107456452 107456807 -52142976 - MTE2b LTR MaLR -2 377 1 7 1404 670 161 153 109 chr3 107457049 107457074 -52142709 - B3 SINE B2 -5 211 189 7 1404 2550 140 52 7 chr3 107457074 107457477 -52142306 + MTC LTR MaLR 1 421 0 7 1404 670 161 153 109 chr3 107457477 107457612 -52142171 - B3 SINE B2 -28 188 37 7 1404 1174 73 164 0 chr3 107457612 107457777 -52142006 - B2_Mm1t SINE B2 0 193 2 7 1404 670 161 153 109 chr3 107457777 107457817 -52141966 - B3 SINE B2 -180 36 1 7 1404 420 244 194 8 chr3 107457908 107458032 -52141751 - RSINE1 SINE B4 -17 148 2 7 1404 186 43 0 0 chr3 107458289 107458312 -52141471 + (TTTA)n Simple_repeat Simple_repeat 3 25 0 7 1404 1037 115 13 0 chr3 107458312 107458469 -52141314 - B2_Mm2 SINE B2 -36 159 1 7 1404 351 0 0 0 chr3 107458912 107458951 -52140832 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 7 1404 1173 66 0 0 chr3 107458951 107459103 -52140680 - B2_Mm2 SINE B2 -37 158 7 7 1404 1182 128 148 0 chr3 107459382 107459578 -52140205 - URR1B DNA MER1_type 0 225 1 7 1404 1470 190 102 33 chr3 107459837 107460201 -52139582 + MTD LTR MaLR 31 419 0 7 1404 434 296 65 0 chr3 107460592 107460700 -52139083 - RSINE1 SINE B4 -13 152 38 7 1404 201 154 0 0 chr3 107460713 107460752 -52139031 + T-rich Low_complexity Low_complexity 1 39 0 7 1404 713 179 89 0 chr3 107460761 107460884 -52138899 - B1_Mus2 SINE Alu -13 134 1 7 1404 192 152 0 0 chr3 107461338 107461371 -52138412 + (CAT)n Simple_repeat Simple_repeat 1 33 0 7 1404 264 175 68 44 chr3 107461386 107461474 -52138309 - ORR1E LTR MaLR -2 377 276 7 1404 463 295 0 30 chr3 107461527 107461660 -52138123 - ORR1E LTR MaLR -210 149 21 7 1404 701 223 23 35 chr3 107462043 107462215 -52137568 - B2_Mm2 SINE B2 -19 176 7 7 1404 626 238 172 84 chr3 107462518 107462803 -52136980 - RMER12 LTR ERVK 0 1322 1013 7 1404 252 0 0 0 chr3 107462854 107462882 -52136901 + (CATA)n Simple_repeat Simple_repeat 4 31 0 7 1404 1784 91 148 3 chr3 107462882 107463192 -52136591 - RMER12 LTR ERVK -553 769 415 7 1404 981 186 0 37 chr3 107463189 107463379 -52136404 - RMER12 LTR ERVK -1139 183 1 7 1404 403 307 40 0 chr3 107463462 107463563 -52136220 + PB1D10 SINE Alu 2 106 -11 7 1404 265 265 52 111 chr3 107463464 107463617 -52136166 + MT2B LTR ERVL 168 311 -290 7 1404 378 252 52 35 chr3 107463794 107463932 -52135851 - B3A SINE B2 0 216 73 7 1404 502 240 236 0 chr3 107464399 107464624 -52135159 + MLT-int LTR MaLR 1397 1674 -61 7 1404 475 258 67 0 chr3 107464850 107464970 -52134813 + MLT1A1 LTR MaLR 245 372 -36 7 1404 958 25 0 0 chr3 107465084 107465203 -52134580 + B1_Mus2 SINE Alu 29 147 0 7 1404 886 257 19 19 chr3 107465226 107465432 -52134351 - B4 SINE B4 -75 217 12 7 1404 277 339 57 129 chr3 107465478 107465796 -52133987 - ORR1E LTR MaLR -2 357 63 7 1404 380 294 73 0 chr3 107465854 107465963 -52133820 + PB1 SINE Alu 5 121 -6 7 1404 207 253 0 39 chr3 107467881 107467959 -52131824 + A-rich Low_complexity Low_complexity 2 76 0 7 1404 238 224 155 0 chr3 107468230 107468288 -52131495 - ID4_ SINE ID -1 82 16 7 1404 1003 201 42 0 chr3 107469102 107469291 -52130492 + B3 SINE B2 10 206 -10 7 1404 715 271 41 31 chr3 107469335 107469529 -52130254 - B3 SINE B2 -11 205 10 7 1404 26 0 0 0 chr3 107473722 107473748 -52126035 + AT_rich Low_complexity Low_complexity 1 26 0 7 1404 548 265 26 0 chr3 107474385 107474502 -52125281 - PB1 SINE Alu -7 120 1 7 1404 230 234 0 0 chr3 107474760 107474807 -52124976 - ID4_ SINE ID 0 83 37 7 1404 1287 48 0 0 chr3 107475706 107475852 -52123931 - B1_Mus1 SINE Alu 0 148 3 7 1404 29 0 0 0 chr3 107475871 107475900 -52123883 + AT_rich Low_complexity Low_complexity 1 29 0 7 1404 245 351 0 13 chr3 107476159 107476234 -52123549 - ID4 SINE ID -9 74 1 7 1404 583 145 67 25 chr3 107476734 107476854 -52122929 - B1_Mur4 SINE Alu -7 143 19 7 1404 409 264 164 26 chr3 107478435 107478587 -52121196 - MER5A DNA MER1_type 0 189 17 7 1405 388 289 155 67 chr3 107479523 107479716 -52120067 - B4 SINE B4 0 292 83 7 1405 1420 131 127 0 chr3 107479732 107479984 -52119799 - Lx LINE L1 -2 6652 6369 8 1405 347 143 221 0 chr3 107479986 107480063 -52119720 - B4 SINE B4 -198 94 1 8 1405 588 271 36 0 chr3 107480814 107480954 -52118829 - RSINE1 SINE B4 -14 151 7 8 1405 1177 117 39 0 chr3 107481096 107481275 -52118508 + B2_Mm2 SINE B2 10 195 0 8 1405 329 296 8 163 chr3 107481860 107481900 -52117883 - PB1D10 SINE Alu -3 114 89 8 1405 1658 52 5 0 chr3 107481900 107482092 -52117691 + B2_Mm1t SINE B2 1 193 0 8 1405 329 296 8 163 chr3 107482092 107482180 -52117603 - PB1D10 SINE Alu -29 88 7 8 1405 491 114 13 0 chr3 107482291 107482370 -52117413 - URR1B DNA MER1_type 0 225 146 8 1405 830 273 46 0 chr3 107482704 107482898 -52116885 + B3 SINE B2 5 207 -9 8 1405 190 301 40 40 chr3 107483315 107483391 -52116392 + L2a LINE L2 3350 3425 -1 8 1405 21 57 0 0 chr3 107483509 107483544 -52116239 + AT_rich Low_complexity Low_complexity 1 35 0 8 1405 612 152 79 8 chr3 107486351 107486477 -52113306 + B2_Mm2 SINE B2 53 187 -8 8 1405 1150 62 21 7 chr3 107487394 107487539 -52112244 - B1_Mus2 SINE Alu 0 147 1 8 1405 1409 78 72 0 chr3 107487553 107487733 -52112050 - B2_Mm1t SINE B2 0 193 1 8 1405 806 184 56 7 chr3 107488003 107488145 -52111638 + B1_Mur2 SINE Alu 1 149 0 8 1405 246 247 95 10 chr3 107488355 107488451 -52111332 + B4 SINE B4 196 274 -18 8 1405 264 187 66 13 chr3 107488764 107488840 -52110943 - L1MC4a LINE L1 -1918 5964 5885 8 1405 286 278 158 0 chr3 107488903 107488985 -52110798 + PB1D10 SINE Alu 1 98 -22 8 1405 342 265 12 12 chr3 107490297 107490381 -52109402 + RSINE1 SINE B4 4 87 -78 8 1405 506 263 68 63 chr3 107490703 107490910 -52108873 + CYRA11_Mm Unknown Y-chromosome 169 376 -241 8 1405 983 110 126 6 chr3 107490743 107490917 -52108866 - URR1B DNA MER1_type -28 197 3 8 1405 394 264 54 8 chr3 107491000 107491130 -52108653 + L1MA9 LINE L1 6177 6312 0 8 1405 604 246 7 29 chr3 107491277 107491415 -52108368 - B3A SINE B2 -61 137 3 8 1405 471 35 0 0 chr3 107492482 107492539 -52107244 + (TC)n Simple_repeat Simple_repeat 2 58 0 8 1405 1262 56 0 0 chr3 107495728 107495872 -52103911 + B1_Mus1 SINE Alu 1 144 -4 8 1405 418 174 110 94 chr3 107496188 107496315 -52103468 + RSINE1 SINE B4 1 129 -36 8 1405 235 283 8 16 chr3 107499195 107499317 -52100466 + (CCCG)n Simple_repeat Simple_repeat 3 123 0 8 1405 1105 283 100 52 chr3 107500398 107500898 -52098885 - LTR85b LTR Gypsy? -12 772 249 1 1405 281 173 18 5 chr3 107501024 107501095 -52098688 - B1F SINE Alu -6 143 38 2 1405 255 319 0 110 chr3 107502598 107502621 -52097162 + MT2B2 LTR ERVL 145 153 -431 3 1405 712 259 0 7 chr3 107502621 107502769 -52097014 + B1F1 SINE Alu 1 147 -2 4 1405 759 232 270 44 chr3 107502785 107503122 -52096661 + MTD LTR MaLR 5 417 -2 5 1405 1634 146 107 10 chr3 107504032 107504322 -52095461 + ORR1A3 LTR MaLR 1 318 -8 6 1405 225 0 0 0 chr3 107504910 107504935 -52094848 + (TTTTG)n Simple_repeat Simple_repeat 3 27 0 7 1405 633 47 0 0 chr3 107505206 107505291 -52094492 + (TG)n Simple_repeat Simple_repeat 2 86 0 8 1405 236 245 20 0 chr3 107507611 107507660 -52092123 - L2c LINE L2 -51 3336 3287 9 1405 214 320 15 96 chr3 107508007 107508142 -52091641 - MIRc SINE MIR -123 145 22 1 1405 2665 181 62 4 chr3 107508596 107509084 -52090699 - RMER20A LTR ERVK 0 516 1 1 1405 210 37 0 0 chr3 107509966 107509993 -52089790 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 1405 333 47 0 0 chr3 107509999 107510042 -52089741 + (TTG)n Simple_repeat Simple_repeat 3 45 0 1 1405 422 274 65 0 chr3 107510050 107510159 -52089624 - B1F1 SINE Alu -8 112 3 1 1405 324 289 57 66 chr3 107510061 107510183 -52089600 - ID_B1 SINE B4 -39 185 65 1 1405 375 252 213 5 chr3 107510548 107510759 -52089024 + L1M5 LINE L1 4320 4574 -1572 1 1405 273 152 0 42 chr3 107510771 107510819 -52088964 - ORR1C2 LTR MaLR -9 375 330 1 1405 225 0 0 0 chr3 107510819 107510844 -52088939 + (T)n Simple_repeat Simple_repeat 1 25 0 1 1405 1126 88 0 0 chr3 107510847 107510994 -52088789 - B1_Mus1 SINE Alu 0 148 2 1 1405 1716 155 73 42 chr3 107510994 107511324 -52088459 - ORR1C2 LTR MaLR -43 341 2 1 1405 711 232 49 21 chr3 107511442 107511619 -52088164 + B3A SINE B2 26 193 -2 2 1405 807 270 122 10 chr3 107511619 107512004 -52087779 + L1MD LINE L1 5267 5694 -665 2 1405 612 211 0 0 chr3 107512180 107512284 -52087499 + RSINE1 SINE B4 2 105 -60 2 1405 323 205 132 0 chr3 107512302 107512385 -52087398 - L1MC1 LINE L1 -65 6268 6175 2 1405 302 325 94 28 chr3 107512386 107512598 -52087185 + ORR1D2 LTR MaLR 1 226 -144 2 1405 216 97 0 0 chr3 107512625 107512656 -52087127 + (TTTTC)n Simple_repeat Simple_repeat 4 34 0 2 1405 1151 95 0 0 chr3 107512656 107512804 -52086979 - B1_Mus1 SINE Alu 0 148 1 2 1405 363 301 88 0 chr3 107512873 107513009 -52086774 - L1MC1 LINE L1 -153 6180 6033 2 1405 549 278 71 11 chr3 107513001 107513039 -52086744 - L1MCa LINE L1 -1958 4363 4317 2 1405 243 0 0 0 chr3 107513039 107513066 -52086717 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 2 1405 549 278 71 11 chr3 107513066 107513209 -52086574 - L1MCa LINE L1 -2005 4316 4171 2 1405 513 241 49 0 chr3 107513237 107513399 -52086384 - L1MCa LINE L1 -2921 3400 3231 2 1405 508 311 104 15 chr3 107513401 107513603 -52086180 - MLT1A LTR MaLR 0 374 155 2 1405 708 218 86 50 chr3 107513599 107513797 -52085986 - B3 SINE B2 -5 211 7 3 1405 916 226 17 11 chr3 107513841 107514020 -52085763 - ID_B1 SINE B4 -43 181 2 3 1405 329 260 117 120 chr3 107514054 107514623 -52085160 - L1MCa LINE L1 -4315 2193 1632 2 1405 287 291 33 33 chr3 107514623 107514744 -52085039 - PB1 SINE Alu -2 125 5 3 1405 329 260 117 120 chr3 107514744 107514899 -52084884 - L1MCa LINE L1 -4877 1631 1472 2 1405 1056 253 103 97 chr3 107515072 107515331 -52084452 - L1MCa LINE L1 -5844 664 395 2 1405 1280 88 172 0 chr3 107515331 107515523 -52084260 - URR1B DNA MER1_type 0 225 1 3 1405 1056 253 103 97 chr3 107515523 107515915 -52083868 - L1MCa LINE L1 -6114 394 9 2 1405 33 66 0 0 chr3 107515918 107515979 -52083804 + AT_rich Low_complexity Low_complexity 1 61 0 3 1405 359 282 134 43 chr3 107516096 107516425 -52083358 - ORR1E LTR MaLR 0 359 1 3 1405 829 135 6 119 chr3 107516673 107516841 -52082942 + B1_Mur4 SINE Alu 2 150 0 3 1405 288 356 46 13 chr3 107516860 107517011 -52082772 + MIRb SINE MIR 37 192 -76 3 1405 301 269 15 0 chr3 107518066 107518133 -52081650 - RMER15 LTR ERVL -14 561 494 3 1405 238 325 80 16 chr3 107518356 107518481 -52081302 - Lx8 LINE L1 -309 7164 7032 3 1405 331 362 80 20 chr3 107518771 107518971 -52080812 + MIRb SINE MIR 28 239 -29 4 1405 286 301 136 0 chr3 107519196 107519299 -52080484 - MIRm SINE MIR -140 136 20 4 1405 370 329 151 71 chr3 107519440 107519679 -52080104 - L2c LINE L2 -3 3384 3118 4 1405 220 330 0 65 chr3 107519794 107519901 -52079882 - L2a LINE L2 -93 3333 3234 4 1405 471 354 99 53 chr3 107520664 107521189 -52078594 - MER34A LTR ERV1 -20 551 3 4 1405 353 333 114 13 chr3 107521225 107521383 -52078400 + LTR16D LTR ERVL 468 641 -10 4 1405 282 285 446 10 chr3 107521580 107521788 -52077995 + L1MC LINE L1 5514 5811 -2071 4 1405 1482 68 0 25 chr3 107522177 107522373 -52077410 - B2_Mm2 SINE B2 -3 192 2 4 1405 207 100 0 0 chr3 107522376 107522406 -52077377 + (T)n Simple_repeat Simple_repeat 1 30 0 4 1405 288 315 70 74 chr3 107522555 107522912 -52076871 - MTE2a LTR MaLR -7 367 9 4 1405 557 281 54 39 chr3 107522925 107523129 -52076654 - MLT1E1A LTR MaLR 0 680 474 5 1405 274 224 17 33 chr3 107523107 107523167 -52076616 - ID_B1 SINE B4 -5 219 161 5 1405 416 223 204 9 chr3 107523240 107523353 -52076430 - B3A SINE B2 -22 176 42 5 1405 270 164 45 76 chr3 107523378 107523444 -52076339 - B1F SINE Alu 0 149 86 5 1405 352 156 109 0 chr3 107523391 107523455 -52076328 - ID_B1 SINE B4 -8 216 146 5 1405 1176 68 0 0 chr3 107523463 107523610 -52076173 - B1_Mus1 SINE Alu -1 147 1 5 1405 605 276 55 0 chr3 107523721 107523866 -52075917 - ID_B1 SINE B4 -71 153 1 5 1405 461 305 84 51 chr3 107523869 107524083 -52075700 - MLT1E1A LTR MaLR -162 462 242 5 1405 248 200 0 15 chr3 107524340 107524406 -52075377 + T-rich Low_complexity Low_complexity 4 68 0 5 1405 1126 170 3 9 chr3 107524429 107524764 -52075019 - MTC LTR MaLR -2 419 1 5 1405 217 313 75 0 chr3 107524766 107524833 -52074950 - PB1D10 SINE Alu -34 83 12 5 1405 214 273 0 0 chr3 107524848 107524892 -52074891 - MER5A DNA MER1_type -77 112 69 5 1405 230 200 12 70 chr3 107525424 107525510 -52074273 - RLTR13D5 LTR ERVK -558 465 385 6 1405 231 273 26 0 chr3 107526096 107526173 -52073610 + L1MD LINE L1 4258 4336 -1810 6 1405 2615 189 64 11 chr3 107526553 107527100 -52072683 - Lx9 LINE L1 -5 7639 7064 6 1405 306 335 218 21 chr3 107527660 107528136 -52071647 + L2a LINE L2 2674 3243 -183 6 1405 1093 168 113 0 chr3 107528404 107528607 -52071176 - URR1A DNA MER1_type 0 226 1 6 1405 522 316 0 35 chr3 107529082 107529223 -52070560 + RSINE1 SINE B4 2 137 -28 6 1405 3180 70 12 0 chr3 107529282 107529695 -52070088 + BGLII LTR ERVK 4 421 0 6 1405 2076 154 41 19 chr3 107530598 107530962 -52068821 - ORR1D1 LTR MaLR 0 374 3 6 1405 292 322 53 11 chr3 107531008 107531102 -52068681 + MIR SINE MIR 30 127 -135 6 1405 547 229 9 0 chr3 107532002 107532111 -52067672 - B3 SINE B2 0 216 107 6 1405 468 0 0 0 chr3 107532119 107532171 -52067612 + (TG)n Simple_repeat Simple_repeat 1 52 0 7 1405 543 303 0 29 chr3 107532182 107532318 -52067465 - RSINE1 SINE B4 -16 149 18 7 1405 578 281 149 52 chr3 107532448 107532638 -52067145 + MLT1D LTR MaLR 181 373 -132 7 1405 3301 36 5 8 chr3 107532638 107533035 -52066748 - MTA_Mm LTR MaLR 0 396 1 7 1405 578 281 149 52 chr3 107533035 107533133 -52066650 + MLT1D LTR MaLR 374 497 -8 7 1405 199 326 58 0 chr3 107533489 107533575 -52066208 + MIRc SINE MIR 174 264 -4 7 1405 317 265 10 20 chr3 107534656 107534756 -52065027 + CT-rich Low_complexity Low_complexity 3 101 0 7 1405 257 220 0 48 chr3 107534955 107535017 -52064766 - MIRc SINE MIR -119 149 91 7 1405 240 35 0 0 chr3 107535085 107535114 -52064669 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 7 1405 311 270 199 81 chr3 107535298 107535459 -52064324 + L1ME4a LINE L1 5847 6026 -98 7 1405 410 197 0 13 chr3 107535484 107535561 -52064222 - B4 SINE B4 -215 77 2 7 1405 457 279 27 41 chr3 107535981 107536127 -52063656 - B1F SINE Alu -5 144 1 8 1405 408 265 83 32 chr3 107536167 107536323 -52063460 - RSINE1 SINE B4 0 165 2 8 1405 297 206 52 52 chr3 107536351 107536448 -52063335 - L1ME4a LINE L1 -246 5878 5782 8 1405 265 283 199 28 chr3 107536568 107536819 -52062964 + L1MC5 LINE L1 7270 7563 -398 8 1405 1151 249 0 56 chr3 107537342 107537648 -52062135 - B4A SINE B4 -3 289 1 8 1405 710 195 39 0 chr3 107537833 107537961 -52061822 - B1_Mur3 SINE Alu -13 136 4 8 1405 441 0 0 0 chr3 107538272 107538321 -52061462 + (TTTCC)n Simple_repeat Simple_repeat 5 53 0 8 1405 919 295 111 64 chr3 107538349 107538642 -52061141 - L1M4c LINE L1 -4551 1833 1526 8 1405 1929 121 69 0 chr3 107538642 107538931 -52060852 + RLTR27 LTR ERVK 1 309 0 8 1405 919 295 111 64 chr3 107538931 107539131 -52060652 - L1M4c LINE L1 -4859 1525 1315 8 1405 1126 79 0 0 chr3 107539131 107539270 -52060513 - B1_Mus2 SINE Alu -8 139 1 8 1405 919 295 111 64 chr3 107539270 107539781 -52060002 - L1M4c LINE L1 -5070 1314 780 8 1405 512 312 18 64 chr3 107539799 107539970 -52059813 - RSINE1 SINE B4 0 165 3 9 1405 345 377 35 39 chr3 107540760 107540992 -52058791 + MIRb SINE MIR 15 245 -23 9 1405 28 48 0 0 chr3 107541227 107541269 -52058514 + AT_rich Low_complexity Low_complexity 1 42 0 9 1405 201 147 0 0 chr3 107541271 107541305 -52058478 + (TG)n Simple_repeat Simple_repeat 2 35 0 9 1405 416 35 0 17 chr3 107541309 107541368 -52058415 + (GA)n Simple_repeat Simple_repeat 1 58 0 9 1405 264 206 309 0 chr3 107541375 107541443 -52058340 - RSINE1 SINE B4 -32 133 45 9 1405 404 225 12 0 chr3 107541894 107541974 -52057809 - ID4 SINE ID 0 83 3 9 1405 183 235 0 0 chr3 107542001 107542052 -52057731 + CT-rich Low_complexity Low_complexity 1 51 0 9 1405 225 0 0 0 chr3 107542055 107542080 -52057703 + (T)n Simple_repeat Simple_repeat 1 25 0 9 1405 318 266 96 31 chr3 107542089 107542102 -52057681 - B4A SINE B4 -85 207 155 9 1405 473 204 61 10 chr3 107542102 107542201 -52057582 - B1F1 SINE Alu -43 106 3 1 1405 318 266 96 31 chr3 107542201 107542217 -52057566 - B4A SINE B4 -85 154 77 9 1405 384 329 51 38 chr3 107543163 107543321 -52056462 - MER5B DNA MER1_type -17 161 2 1 1405 375 338 13 7 chr3 107547700 107547898 -52051885 + (TTAG)n Simple_repeat Simple_repeat 1 199 0 1 1405 213 250 16 16 chr3 107548005 107548066 -52051717 - L2c LINE L2 -44 3343 3283 1 1405 1944 290 110 37 chr3 107548275 107549139 -52050644 + L3 LINE CR1 3555 4481 -8 1 1405 351 136 0 0 chr3 107550329 107550388 -52049395 + (TCTCCC)n Simple_repeat Simple_repeat 5 63 0 1 1405 623 139 39 29 chr3 107550390 107550494 -52049289 - B1_Mur4 SINE Alu -5 145 41 1 1405 225 197 0 0 chr3 107550506 107550567 -52049216 + CT-rich Low_complexity Low_complexity 2 62 0 1 1405 219 36 0 0 chr3 107550659 107550687 -52049096 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 1 1405 257 234 36 23 chr3 107550687 107550754 -52049029 - B1F1 SINE Alu -14 135 31 1 1405 411 208 175 0 chr3 107550782 107550902 -52048881 - B1_Mur1 SINE Alu -7 142 2 1 1405 260 309 64 35 chr3 107554927 107555068 -52044715 + MER5A DNA MER1_type 31 175 -3 1 1405 227 239 268 56 chr3 107555184 107555326 -52044457 + L2a LINE L2 2000 2171 -1248 1 1405 187 365 0 31 chr3 107555489 107555554 -52044229 + L2a LINE L2 2467 2529 -890 1 1405 211 337 156 0 chr3 107555637 107555842 -52043941 + L2a LINE L2 2655 2891 -528 1 1405 193 291 146 78 chr3 107556153 107556358 -52043425 + L2a LINE L2 3207 3425 -1 1 1405 201 293 0 0 chr3 107556399 107556440 -52043343 + L2b LINE L2 3241 3281 -94 1 1405 203 0 37 0 chr3 107557143 107557170 -52042613 + (TC)n Simple_repeat Simple_repeat 1 28 0 1 1405 189 261 133 61 chr3 107558046 107558144 -52041639 + MIRb SINE MIR 125 229 -39 1 1405 199 323 122 20 chr3 107558642 107558740 -52041043 + L3 LINE CR1 4279 4386 -103 1 1405 676 277 136 0 chr3 107559906 107560090 -52039693 - B3 SINE B2 -2 214 6 1 1405 237 33 0 0 chr3 107560291 107560321 -52039462 + (TTCC)n Simple_repeat Simple_repeat 1 30 0 1 1405 210 213 0 0 chr3 107561125 107561219 -52038564 + GA-rich Low_complexity Low_complexity 2 95 0 1 1405 333 0 0 0 chr3 107562374 107562411 -52037372 + (TC)n Simple_repeat Simple_repeat 2 38 0 1 1405 23 0 0 0 chr3 107562904 107562927 -52036856 + GC_rich Low_complexity Low_complexity 1 23 0 1 1405 23 0 0 0 chr3 107562954 107562977 -52036806 + GC_rich Low_complexity Low_complexity 1 23 0 1 1405 213 108 0 0 chr3 107563245 107563282 -52036501 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 1405 214 368 31 51 chr3 107564196 107564391 -52035392 + L2c LINE L2 3031 3221 -166 1 1405 225 0 0 0 chr3 107564401 107564426 -52035357 + (TTCA)n Simple_repeat Simple_repeat 2 26 0 1 1405 1231 114 108 10 chr3 107564445 107564649 -52035134 + URR1A DNA MER1_type 3 226 0 1 1405 396 0 0 0 chr3 107565752 107565796 -52033987 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 1405 711 250 14 0 chr3 107565797 107565937 -52033846 - RSINE1 SINE B4 -22 143 2 1 1405 22 0 0 0 chr3 107565938 107565960 -52033823 + AT_rich Low_complexity Low_complexity 1 22 0 1 1405 273 303 102 7 chr3 107565992 107566124 -52033659 + MIRc SINE MIR 34 176 -100 1 1405 215 309 163 54 chr3 107566433 107566580 -52033203 - MIR3 SINE MIR -1 207 45 1 1405 310 264 65 25 chr3 107568462 107568600 -52031183 + MIRc SINE MIR 127 268 0 1 1405 202 331 77 33 chr3 107569283 107569464 -52030319 + MIRc SINE MIR 38 226 -42 1 1405 270 351 57 43 chr3 107569490 107569654 -52030129 + MIR SINE MIR 31 191 -85 1 1405 190 318 81 23 chr3 107572200 107572287 -52027496 - L2a LINE L2 -1 3425 3334 1 1405 315 0 0 0 chr3 107572884 107572919 -52026864 + (TC)n Simple_repeat Simple_repeat 2 36 0 1 1405 301 314 0 28 chr3 107573208 107573321 -52026462 + ID4 SINE ID 5 113 -39 1 1405 440 273 20 0 chr3 107573336 107573435 -52026348 + PB1D10 SINE Alu 4 104 -13 1 1405 1123 65 0 0 chr3 107573437 107573575 -52026208 + B1_Mus1 SINE Alu 2 139 -9 1 1405 529 298 84 6 chr3 107574165 107574344 -52025439 + MIR SINE MIR 8 200 -62 1 1405 552 330 57 14 chr3 107574344 107574556 -52025227 - MER58A DNA MER1_type -3 221 1 1 1405 231 234 0 21 chr3 107574574 107574622 -52025161 + MIRb SINE MIR 222 268 0 1 1405 361 322 123 20 chr3 107574641 107574885 -52024898 - L2a LINE L2 -25 3401 3133 1 1405 298 347 0 0 chr3 107576656 107576731 -52023052 + PB1D10 SINE Alu 1 75 -42 1 1405 230 347 92 57 chr3 107576822 107577137 -52022646 - L2c LINE L2 -102 3273 2948 1 1405 243 316 37 84 chr3 107577197 107577304 -52022479 + ID4 SINE ID 2 103 -49 1 1405 282 299 223 29 chr3 107578013 107578251 -52021532 + L2 LINE L2 2712 2995 -424 1 1405 522 0 0 0 chr3 107579021 107579079 -52020704 + (CA)n Simple_repeat Simple_repeat 2 59 0 1 1405 205 339 89 24 chr3 107580555 107580724 -52019059 - L2a LINE L2 -229 3197 3018 1 1405 277 283 77 130 chr3 107581282 107581489 -52018294 - LTR89 LTR ERVL? -129 750 555 1 1405 290 266 25 0 chr3 107582171 107582250 -52017533 + ID4 SINE ID 3 83 0 1 1405 4384 64 0 7 chr3 107582606 107583157 -52016626 - L1Md_F2 LINE L1 -6 6576 6030 1 1405 211 324 13 66 chr3 107583601 107583641 -52016142 + L2 LINE L2 2363 2401 -1018 1 1405 394 238 107 80 chr3 107583641 107583828 -52015955 + MER53 DNA hAT 1 192 -1 1 1405 211 324 13 66 chr3 107583828 107583863 -52015920 + L2 LINE L2 2402 2434 -985 1 1405 381 84 0 46 chr3 107585714 107585801 -52013982 + (CAAA)n Simple_repeat Simple_repeat 2 84 0 1 1405 810 248 25 0 chr3 107586929 107587086 -52012697 - RSINE1 SINE B4 -2 163 3 1 1405 880 270 40 47 chr3 107588816 107589069 -52010714 - MTE2a LTR MaLR -16 363 113 1 1405 1634 209 85 26 chr3 107589102 107589480 -52010303 + MTD LTR MaLR 12 411 -8 1 1405 353 192 0 4 chr3 107589484 107589548 -52010235 - MTE2a LTR MaLR -271 148 63 1 1405 582 192 57 16 chr3 107589588 107589710 -52010073 - MTEa LTR MaLR -3 376 250 1 1405 225 164 200 0 chr3 107591352 107591407 -52008376 + ID4_ SINE ID 2 67 -16 1 1405 186 43 0 0 chr3 107591417 107591440 -52008343 + (TCTCTG)n Simple_repeat Simple_repeat 2 24 0 1 1405 245 164 0 35 chr3 107591443 107591500 -52008283 + (CAGAGA)n Simple_repeat Simple_repeat 6 60 0 1 1405 275 300 130 0 chr3 107593423 107593523 -52006260 + L2 LINE L2 2508 2620 -799 1 1405 779 164 7 50 chr3 107593539 107593680 -52006103 + B1_Mur4 SINE Alu 11 145 -5 1 1405 779 85 161 8 chr3 107594563 107594681 -52005102 - B1_Mus1 SINE Alu -12 136 1 1 1405 996 214 130 122 chr3 107594846 107595230 -52004553 + RMER10B LTR ERVL 1 387 -11 1 1405 382 225 130 53 chr3 107595557 107595581 -52004202 - B2_Mm2 SINE B2 -10 185 161 1 1405 460 77 26 0 chr3 107595581 107595659 -52004124 + (TG)n Simple_repeat Simple_repeat 1 80 0 1 1405 590 225 130 53 chr3 107595659 107595803 -52003980 - B3A SINE B2 -35 160 4 1 1405 531 312 92 102 chr3 107597514 107597849 -52001934 + ORR1E LTR MaLR 2 333 -26 1 1405 189 0 0 0 chr3 107597871 107597892 -52001891 + (CA)n Simple_repeat Simple_repeat 1 21 0 1 1405 1138 256 7 32 chr3 107598181 107598459 -52001324 - B4A SINE B4 -20 272 2 1 1405 275 256 0 11 chr3 107598533 107598624 -52001159 + GA-rich Low_complexity Low_complexity 1 90 0 1 1405 418 281 8 34 chr3 107598875 107598993 -52000790 - PB1D10 SINE Alu -2 115 1 1 1405 2051 192 61 0 chr3 107599729 107600124 -51999659 - MTD LTR MaLR 0 419 1 1 1405 510 83 0 0 chr3 107600787 107600859 -51998924 + (TG)n Simple_repeat Simple_repeat 2 73 0 1 1405 557 226 25 34 chr3 107600862 107600981 -51998802 - B1F1 SINE Alu -14 135 18 1 1405 235 211 37 134 chr3 107600917 107600999 -51998784 - MT2B2 LTR ERVL -349 235 162 1 1405 302 288 32 97 chr3 107601181 107601335 -51998448 - MLT1D-int LTR MaLR -110 1277 1134 1 1405 227 255 125 19 chr3 107601466 107601570 -51998213 + MER72 LTR ERV1 608 722 0 1 1405 183 322 105 48 chr3 107601655 107601779 -51998004 - MER5A DNA MER1_type 0 189 59 1 1405 449 283 0 10 chr3 107602610 107602710 -51997073 + B3A SINE B2 2 100 -98 1 1405 692 99 9 0 chr3 107602727 107602838 -51996945 + (TC)n Simple_repeat Simple_repeat 1 112 0 1 1405 920 239 51 14 chr3 107602893 107603109 -51996674 + ID_B1 SINE B4 1 224 0 1 1405 614 306 152 26 chr3 107603531 107603880 -51995903 - MLT1D LTR MaLR 0 505 113 1 1405 230 341 49 105 chr3 107603971 107604256 -51995527 + MLT1A0 LTR MaLR 36 304 -61 1 1405 364 291 59 59 chr3 107604622 107604808 -51994975 + L1ME4a LINE L1 5698 5883 -241 1 1405 258 169 0 106 chr3 107605424 107605490 -51994293 - MER5B DNA MER1_type -27 151 93 1 1405 448 281 183 5 chr3 107605985 107606171 -51993612 + MIR SINE MIR 8 226 -36 1 1405 279 298 0 0 chr3 107606172 107606229 -51993554 + MER2 DNA MER2_type 12 68 -277 1 1405 1218 248 21 28 chr3 107606262 107606544 -51993239 - B4A SINE B4 -4 288 9 1 1405 1281 113 11 0 chr3 107606558 107606744 -51993039 - B2_Mm1t SINE B2 -3 190 3 1 1405 1159 202 32 36 chr3 107606866 107607118 -51992665 - MTE2b LTR MaLR -8 371 121 1 1405 284 327 22 112 chr3 107607126 107607305 -51992478 + MER2 DNA MER2_type 160 322 -23 1 1405 2604 94 19 6 chr3 107607307 107607670 -51992113 - RLTR9A LTR ERVK 0 368 1 1 1405 193 286 64 50 chr3 107607825 107607965 -51991818 + L3 LINE CR1 2368 2509 -1980 1 1405 449 256 73 24 chr3 107608195 107608319 -51991464 + RSINE1 SINE B4 4 133 -32 1 1405 21 36 0 0 chr3 107608343 107608371 -51991412 + AT_rich Low_complexity Low_complexity 1 28 0 1 1405 259 333 102 0 chr3 107608421 107608568 -51991215 + L2 LINE L2 2838 2999 -420 1 1405 212 79 0 50 chr3 107608679 107608719 -51991064 + (TTTTTA)n Simple_repeat Simple_repeat 4 41 0 1 1405 798 160 99 0 chr3 107608720 107608851 -51990932 - B1_Mur4 SINE Alu -6 144 1 1 1405 219 69 0 0 chr3 107608879 107608908 -51990875 + (TCC)n Simple_repeat Simple_repeat 3 31 0 1 1405 978 129 34 23 chr3 107608914 107609089 -51990694 - B2_Mm2 SINE B2 -17 178 2 1 1405 2164 250 82 57 chr3 107609089 107609354 -51990429 - L1MC1 LINE L1 -8 6325 6080 2 1405 729 105 452 19 chr3 107609354 107609509 -51990274 - URR1A DNA MER1_type 0 226 5 2 1405 2164 250 82 57 chr3 107609509 107610088 -51989695 - L1MC1 LINE L1 -254 6079 5460 2 175 298 243 25 63 chr3 107610099 107610178 -51989605 - ID4 SINE ID -5 78 3 2 1406 316 275 15 29 chr3 107610182 107610371 -51989412 - L1MC1 LINE L1 -905 5439 5254 2 1406 22 0 0 0 chr3 107610832 107610854 -51988929 + AT_rich Low_complexity Low_complexity 1 22 0 2 1406 1365 72 56 0 chr3 107612267 107612427 -51987356 + B2_Mm1a SINE B2 1 160 -33 2 1406 294 29 0 0 chr3 107612427 107612462 -51987321 + (TAAA)n Simple_repeat Simple_repeat 3 37 0 2 1406 1365 72 56 0 chr3 107612462 107612481 -51987302 + B2_Mm1a SINE B2 161 189 -4 2 1406 404 294 152 21 chr3 107612921 107613164 -51986619 + MLT1C LTR MaLR 142 416 -51 2 1406 231 316 25 25 chr3 107613254 107613335 -51986448 + MamGypLTR3 LTR Gypsy 757 837 -2 2 1406 341 292 206 9 chr3 107614051 107614265 -51985518 - MLT2F LTR ERVL -367 296 41 2 1406 251 214 0 14 chr3 107614274 107614345 -51985438 + (TATG)n Simple_repeat Simple_repeat 3 72 0 2 1406 578 171 81 4 chr3 107614345 107614459 -51985324 - B1_Mur3 SINE Alu -3 117 5 2 1406 26 0 0 0 chr3 107614459 107614485 -51985298 + AT_rich Low_complexity Low_complexity 1 26 0 2 1406 736 256 30 30 chr3 107614487 107614684 -51985099 - B3A SINE B2 0 198 2 2 1406 259 288 73 50 chr3 107614691 107614870 -51984913 - Lx8 LINE L1 -1 7472 7290 2 1406 259 161 16 0 chr3 107614868 107614930 -51984853 + Lx9 LINE L1 7580 7642 -2 2 1406 4813 172 95 5 chr3 107614946 107615924 -51983859 + RMER1B Other Other 1 1066 0 2 1406 185 119 0 23 chr3 107616252 107616295 -51983488 + (CAAAAA)n Simple_repeat Simple_repeat 1 42 0 2 1406 1008 75 0 0 chr3 107616334 107616481 -51983302 + (GGGA)n Simple_repeat Simple_repeat 3 149 0 2 1406 360 253 0 0 chr3 107616520 107616595 -51983188 - ID4 SINE ID -6 77 3 2 1406 289 266 82 17 chr3 107616684 107616786 -51982997 - PB1D10 SINE Alu -37 112 5 2 1406 1470 75 5 0 chr3 107617107 107617295 -51982488 + B2_Mm1a SINE B2 1 189 -4 2 1406 334 290 134 22 chr3 107617573 107617585 -51982198 + B4 SINE B4 81 225 -63 2 1406 681 159 17 42 chr3 107617585 107617703 -51982080 + PB1D7 SINE Alu 6 120 0 2 1406 214 200 91 0 chr3 107617720 107617775 -51982008 + MIR SINE MIR 133 192 -70 2 1406 355 336 65 42 chr3 107617905 107618155 -51981628 - MIR SINE MIR -16 252 3 2 1406 777 192 0 0 chr3 107618327 107618452 -51981331 - B3 SINE B2 -89 127 3 2 1406 878 280 38 13 chr3 107619559 107619798 -51979985 - MER2 DNA MER2_type -31 314 70 2 1406 430 235 47 70 chr3 107620125 107620253 -51979530 - MER5C1 DNA MER1_type -41 222 98 2 1406 711 268 59 23 chr3 107620263 107620569 -51979214 - L1MB8 LINE L1 0 6178 5862 2 1406 185 0 40 0 chr3 107620835 107620860 -51978923 + (TTG)n Simple_repeat Simple_repeat 2 27 0 2 1406 770 311 76 14 chr3 107621869 107622237 -51977546 - L1MB8 LINE L1 -313 5865 5475 2 1406 230 276 0 0 chr3 107622286 107622344 -51977439 - MER5C1 DNA MER1_type -161 102 45 2 1406 336 299 9 27 chr3 107622521 107622683 -51977100 + L1MB7 LINE L1 5950 6104 -80 2 1406 3635 195 57 42 chr3 107622825 107623205 -51976578 - RLTR40 LTR ERVK -6 811 413 2 1406 180 0 0 0 chr3 107623205 107623225 -51976558 + (CAAA)n Simple_repeat Simple_repeat 3 22 0 2 1406 3635 195 57 42 chr3 107623225 107623637 -51976146 - RLTR40 LTR ERVK -405 412 8 2 1406 597 205 107 78 chr3 107624245 107624451 -51975332 + B3 SINE B2 1 212 -4 2 1406 399 272 117 0 chr3 107624487 107624590 -51975193 + PB1D10 SINE Alu 3 117 0 2 1406 727 185 82 0 chr3 107624594 107624729 -51975054 + B1_Mur2 SINE Alu 2 147 -2 2 1406 31 0 0 0 chr3 107624732 107624763 -51975020 + AT_rich Low_complexity Low_complexity 1 31 0 2 1406 267 292 99 109 chr3 107625521 107625713 -51974070 - ORR1E LTR MaLR -2 357 168 2 1406 824 264 11 1 chr3 107626402 107626591 -51973192 + B3A SINE B2 8 202 -14 2 1406 261 353 67 25 chr3 107627353 107627472 -51972311 + MIRb SINE MIR 123 246 -22 2 1406 626 289 146 4 chr3 107627744 107627858 -51971925 - Lx8 LINE L1 0 7473 7338 2 1406 486 0 0 0 chr3 107627858 107627912 -51971871 + (TTTTA)n Simple_repeat Simple_repeat 2 55 0 2 1406 626 289 146 4 chr3 107627912 107628064 -51971719 - Lx8 LINE L1 -136 7337 7170 2 1406 193 333 117 11 chr3 107629288 107629382 -51970401 + MIR SINE MIR 12 115 -147 2 1406 203 175 50 0 chr3 107629721 107629761 -51970022 - L2a LINE L2 -5 3421 3380 2 1406 1088 36 7 0 chr3 107629941 107630078 -51969705 + (GAGAA)n Simple_repeat Simple_repeat 2 139 0 2 1406 686 44 11 0 chr3 107630250 107630340 -51969443 + (TC)n Simple_repeat Simple_repeat 1 91 0 2 1406 569 179 143 0 chr3 107630340 107630452 -51969331 - B1_Mur4 SINE Alu -12 138 11 2 1406 246 267 135 68 chr3 107630961 107631167 -51968616 - MIRc SINE MIR -22 246 21 2 1406 558 0 0 0 chr3 107631869 107631931 -51967852 + (TC)n Simple_repeat Simple_repeat 1 62 0 2 1406 301 254 15 0 chr3 107632931 107632998 -51966785 - PB1D7 SINE Alu -17 103 36 2 1406 522 46 0 0 chr3 107634795 107634860 -51964923 + (GA)n Simple_repeat Simple_repeat 1 65 0 2 1406 488 325 71 71 chr3 107636279 107636404 -51963379 + MIR SINE MIR 6 133 -129 2 1406 492 291 45 0 chr3 107636404 107636538 -51963245 + B1F SINE Alu 1 140 -9 2 1406 488 325 71 71 chr3 107636538 107636667 -51963116 + MIR SINE MIR 134 260 -2 2 1406 25 0 0 0 chr3 107636692 107636717 -51963066 + AT_rich Low_complexity Low_complexity 1 25 0 2 1406 180 0 0 0 chr3 107637367 107637387 -51962396 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 2 1406 540 230 7 88 chr3 107637392 107637540 -51962243 - B1_Mur2 SINE Alu -13 136 1 2 1406 768 286 28 19 chr3 107637922 107637945 -51961838 - B3 SINE B2 0 216 194 2 1406 2621 179 17 128 chr3 107637945 107638079 -51961704 - RMER15 LTR ERVL 0 575 457 2 1406 249 0 73 0 chr3 107638079 107638120 -51961663 + (TTG)n Simple_repeat Simple_repeat 2 45 0 2 1406 1175 29 0 7 chr3 107638120 107638258 -51961525 - B1_Mm SINE Alu -10 137 1 2 1406 2621 179 17 128 chr3 107638258 107638769 -51961014 - RMER15 LTR ERVL -119 456 2 2 1406 768 286 28 19 chr3 107638769 107638959 -51960824 - B3 SINE B2 -23 193 1 2 1406 484 285 24 8 chr3 107639281 107639405 -51960378 + RSINE1 SINE B4 2 127 -38 2 1406 225 132 0 0 chr3 107639589 107639627 -51960156 + (TG)n Simple_repeat Simple_repeat 1 38 0 2 1406 684 302 52 127 chr3 107639653 107639960 -51959823 - B4A SINE B4 -8 284 1 2 1406 450 0 0 0 chr3 107640379 107640429 -51959354 + (TA)n Simple_repeat Simple_repeat 2 51 0 2 1406 511 212 21 83 chr3 107640719 107640863 -51958920 - B1F SINE Alu -1 148 14 2 1406 211 327 26 165 chr3 107640863 107640909 -51958874 - B4 SINE B4 -63 225 63 2 1406 262 315 47 40 chr3 107641897 107642046 -51957737 - L1M4 LINE L1 -751 5395 5246 2 1406 1009 104 0 7 chr3 107642219 107642354 -51957429 + B1_Mus1 SINE Alu 1 134 -14 2 1406 204 111 0 0 chr3 107644239 107644275 -51955508 + (CAGA)n Simple_repeat Simple_repeat 4 39 0 2 1406 558 353 119 73 chr3 107646159 107646654 -51953129 + MLT1F2 LTR MaLR 32 549 -11 2 1406 1049 126 174 0 chr3 107648046 107648236 -51951547 + URR1B DNA MER1_type 3 225 0 2 1406 784 231 78 26 chr3 107648356 107648587 -51951196 + RCHARR1 DNA MER1_type 630 872 -102 2 1406 180 97 0 0 chr3 107650303 107650334 -51949449 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 2 1406 293 318 109 30 chr3 107650335 107650579 -51949204 - L1M5 LINE L1 -2025 5857 5602 2 1406 258 267 81 0 chr3 107650898 107650984 -51948799 + BC1_Mm scRNA scRNA 7 99 -53 2 1406 563 283 35 35 chr3 107654085 107654228 -51945555 + RSINE1 SINE B4 7 149 -16 2 1406 210 71 0 0 chr3 107654232 107654260 -51945523 + (CATA)n Simple_repeat Simple_repeat 3 30 0 2 1406 853 232 120 75 chr3 107654288 107654326 -51945457 + B4A SINE B4 1 26 -266 2 1406 1503 67 0 10 chr3 107654326 107654523 -51945260 - B2_Mm2 SINE B2 0 195 1 2 1406 853 232 120 75 chr3 107654523 107654750 -51945033 + B4A SINE B4 27 278 -14 2 1406 243 281 173 10 chr3 107655187 107655291 -51944492 + MIRb SINE MIR 77 197 -71 2 1406 318 271 196 18 chr3 107656145 107656339 -51943444 + MIR SINE MIR 34 250 -18 2 1406 714 286 86 27 chr3 107656433 107656762 -51943021 + MER47B DNA MER2_type 1 416 -2 2 1406 336 222 125 0 chr3 107659221 107659293 -51940490 - ID4 SINE ID 0 83 3 2 1406 331 344 25 19 chr3 107659294 107659454 -51940329 + L2b LINE L2 3238 3421 -5 2 1406 820 175 9 5 chr3 107660367 107660585 -51939198 + GA-rich Low_complexity Low_complexity 1 219 0 2 1406 250 322 0 0 chr3 107660790 107660849 -51938934 + L2b LINE L2 3368 3426 0 2 1406 390 74 0 0 chr3 107660946 107661000 -51938783 + (CA)n Simple_repeat Simple_repeat 1 54 0 2 1406 28 29 0 0 chr3 107661333 107661368 -51938415 + GC_rich Low_complexity Low_complexity 1 35 0 2 1406 1736 277 66 52 chr3 107662139 107662247 -51937536 + Tigger7 DNA MER2_type 13 107 -2384 2 1406 2867 69 0 6 chr3 107662247 107662612 -51937171 - L1Md_F2 LINE L1 0 6582 6220 2 1406 1736 277 66 52 chr3 107662612 107663062 -51936721 + Tigger7 DNA MER2_type 108 579 -1912 2 1406 240 310 40 66 chr3 107663071 107663147 -51936636 + ID4_ SINE ID 1 74 -9 2 1406 334 244 174 0 chr3 107663162 107663277 -51936506 + Tigger7 DNA MER2_type 2357 2491 0 2 1406 1169 52 0 0 chr3 107663371 107663505 -51936278 + B1_Mus1 SINE Alu 2 135 -13 2 1406 296 24 24 0 chr3 107663505 107663546 -51936237 + (CAA)n Simple_repeat Simple_repeat 1 42 0 2 1406 265 319 35 0 chr3 107663550 107663666 -51936117 + L1M5 LINE L1 5474 5593 -531 2 1406 414 0 0 0 chr3 107663853 107663899 -51935884 + (TA)n Simple_repeat Simple_repeat 1 46 0 2 1406 464 363 7 7 chr3 107664069 107664216 -51935567 + MLT1A0-int LTR MaLR 1121 1267 -468 2 1406 639 0 0 0 chr3 107664298 107664369 -51935414 + (TC)n Simple_repeat Simple_repeat 2 72 0 2 1406 301 266 174 0 chr3 107664372 107664481 -51935302 + MLT1A0-int LTR MaLR 1559 1686 -49 2 1406 1361 73 11 0 chr3 107664481 107664658 -51935125 + B2_Mm1t SINE B2 1 179 -14 2 1406 255 254 0 0 chr3 107664705 107664760 -51935023 + B2_Mm2 SINE B2 47 101 -94 2 1406 227 204 0 0 chr3 107664806 107664850 -51934933 + MLT1A0-int LTR MaLR 1678 1721 -14 2 1406 554 330 19 52 chr3 107664868 107665161 -51934622 + MLT1A0 LTR MaLR 1 332 -33 2 1406 216 0 0 0 chr3 107665176 107665200 -51934583 + (TG)n Simple_repeat Simple_repeat 1 24 0 2 1406 188 214 18 0 chr3 107665375 107665431 -51934352 + (CAGA)n Simple_repeat Simple_repeat 2 58 0 2 1406 1350 213 71 57 chr3 107665451 107665805 -51933978 - MTD LTR MaLR 0 419 61 3 1406 244 311 82 36 chr3 107666105 107666215 -51933568 + MIRb SINE MIR 73 187 -81 3 1406 956 135 0 41 chr3 107667651 107667798 -51931985 - B1_Mur4 SINE Alu -9 141 1 3 1406 1295 176 9 9 chr3 107667823 107668041 -51931742 - ORR1C1 LTR MaLR -2 376 159 3 1406 270 173 57 13 chr3 107668043 107668201 -51931582 + (CAGAGA)n Simple_repeat Simple_repeat 4 168 0 3 1406 220 254 0 0 chr3 107668204 107668267 -51931516 + (CA)n Simple_repeat Simple_repeat 2 64 0 3 1406 4441 155 131 16 chr3 107668282 107669324 -51930459 - ORR1C1-int LTR MaLR -3 1506 34 3 1406 537 147 53 0 chr3 107669319 107669414 -51930369 - URR1B DNA MER1_type -103 122 23 3 1406 196 30 0 57 chr3 107672225 107672260 -51927523 + (GGGTG)n Simple_repeat Simple_repeat 3 35 0 3 1406 486 0 0 0 chr3 107672419 107672473 -51927310 + (CA)n Simple_repeat Simple_repeat 1 54 0 3 1406 215 276 158 36 chr3 107672652 107672791 -51926992 + MIR SINE MIR 64 219 -43 3 1406 231 323 92 18 chr3 107673385 107673549 -51926234 - MER87 LTR ERV1 -69 472 297 3 1406 269 283 104 0 chr3 107673648 107673754 -51926029 + Lx6 LINE L1 6531 6647 -403 3 1406 1232 62 6 6 chr3 107673758 107673920 -51925863 + B2_Mm1t SINE B2 2 163 -30 3 1406 422 122 0 5 chr3 107673943 107674008 -51925775 + B2_Mm2 SINE B2 47 109 -107 3 1406 1661 31 0 5 chr3 107674030 107674224 -51925559 + B2_Mm1a SINE B2 1 193 0 3 1406 271 23 182 23 chr3 107674224 107674268 -51925515 + ORR1A1 LTR MaLR 291 341 -5 3 1406 204 49 71 24 chr3 107674296 107674338 -51925445 + (TAAAA)n Simple_repeat Simple_repeat 5 48 0 3 1406 1029 239 24 75 chr3 107674387 107674737 -51925046 + Lx6 LINE L1 7120 7417 -43 3 1406 2571 140 17 7 chr3 107674870 107675274 -51924509 + MTC LTR MaLR 1 408 -13 3 1406 809 202 78 34 chr3 107675430 107675635 -51924148 - B3 SINE B2 0 216 3 3 1406 275 297 0 0 chr3 107675920 107675984 -51923799 + (TG)n Simple_repeat Simple_repeat 1 64 0 3 1406 219 320 68 45 chr3 107676410 107676675 -51923108 + L2 LINE L2 2739 3009 -410 3 1406 216 0 0 0 chr3 107676966 107676990 -51922793 + (CACCC)n Simple_repeat Simple_repeat 3 26 0 3 1406 203 279 12 0 chr3 107681712 107681798 -51917985 + (CA)n Simple_repeat Simple_repeat 2 88 0 3 1406 423 0 0 0 chr3 107681829 107681876 -51917907 + (CA)n Simple_repeat Simple_repeat 1 47 0 3 1406 5277 128 92 35 chr3 107684626 107685235 -51914548 - RMER17B LTR ERVK 0 958 315 3 1406 1300 34 0 0 chr3 107685235 107685382 -51914401 + B1_Mm SINE Alu 1 147 0 3 1406 5277 128 92 35 chr3 107685382 107685679 -51914104 - RMER17B LTR ERVK -644 314 1 3 1406 827 20 0 10 chr3 107686125 107686227 -51913556 + (TC)n Simple_repeat Simple_repeat 1 101 0 3 1406 940 103 20 40 chr3 107688462 107688613 -51911170 + B1_Mur3 SINE Alu 2 149 0 3 1406 835 305 63 5 chr3 107688936 107689315 -51910468 - L1MB3 LINE L1 -54 6129 5729 3 1406 766 253 128 36 chr3 107689582 107689832 -51909951 + B4A SINE B4 20 292 0 3 1406 408 167 0 65 chr3 107690259 107690336 -51909447 - ID4 SINE ID -9 74 3 3 1406 537 259 29 7 chr3 107690972 107691105 -51908678 + B1F1 SINE Alu 4 139 -10 3 1406 343 0 43 0 chr3 107691105 107691152 -51908631 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 3 1406 1276 212 22 22 chr3 107691177 107691452 -51908331 + Lx7 LINE L1 7074 7348 -348 3 1406 227 217 17 0 chr3 107691473 107691533 -51908250 + CT-rich Low_complexity Low_complexity 1 61 0 3 1406 454 192 0 10 chr3 107691533 107691633 -51908150 + Lx7 LINE L1 7360 7458 -238 3 1406 3775 152 57 36 chr3 107691667 107692674 -51907109 - RLTR13D1 LTR ERVK 0 1023 1 3 1406 752 160 149 14 chr3 107692699 107692813 -51906970 + Lx7 LINE L1 7449 7589 -107 3 1406 531 0 0 0 chr3 107692813 107692872 -51906911 + (GGAA)n Simple_repeat Simple_repeat 3 61 0 3 1406 752 160 149 14 chr3 107692872 107692972 -51906811 + Lx7 LINE L1 7590 7691 -5 3 1406 195 42 0 0 chr3 107692972 107692996 -51906787 + (TAAA)n Simple_repeat Simple_repeat 4 27 0 3 1406 258 125 0 0 chr3 107695913 107695961 -51903822 + (CAGAA)n Simple_repeat Simple_repeat 4 51 0 3 1406 209 108 0 26 chr3 107695968 107696006 -51903777 + (CTAAA)n Simple_repeat Simple_repeat 4 40 0 3 1406 232 335 104 49 chr3 107697021 107697206 -51902577 + MIRb SINE MIR 40 218 -50 3 1406 2181 69 4 0 chr3 107697426 107697703 -51902080 - MTA_Mm LTR MaLR 0 396 119 3 1406 1317 94 0 27 chr3 107697780 107697966 -51901817 + B2_Mm2 SINE B2 1 181 -14 3 1406 404 255 98 18 chr3 107699716 107699880 -51899903 + Charlie4a DNA MER1_type 24 200 -308 3 1406 525 328 52 21 chr3 107702260 107702453 -51897330 + B4 SINE B4 94 292 0 3 1406 323 290 101 25 chr3 107702540 107702671 -51897112 - MLT1F2 LTR MaLR -145 482 274 3 1406 484 335 56 81 chr3 107702803 107703160 -51896623 + ORR1E LTR MaLR 1 348 -11 3 1406 281 233 151 0 chr3 107703188 107703261 -51896522 - MLT1F2 LTR MaLR -476 84 1 3 1406 186 43 0 0 chr3 107703474 107703497 -51896286 + (GTTTG)n Simple_repeat Simple_repeat 2 24 0 3 1406 600 167 79 0 chr3 107703522 107703636 -51896147 - B1_Mur4 SINE Alu 0 150 28 3 1406 219 173 0 0 chr3 107704658 107704710 -51895073 + T-rich Low_complexity Low_complexity 1 52 0 3 1406 729 113 42 25 chr3 107704712 107704830 -51894953 - PB1D9 SINE Alu 0 120 1 3 1406 416 254 75 11 chr3 107705635 107705761 -51894022 - PB1D7 SINE Alu -15 135 9 3 1406 527 239 247 11 chr3 107705972 107706158 -51893625 + B4A SINE B4 14 243 -49 3 1406 494 178 85 16 chr3 107706142 107706277 -51893506 - B3 SINE B2 -53 145 2 3 1406 462 260 27 0 chr3 107706284 107706434 -51893349 - L1M4c LINE L1 -2642 3737 3584 3 1406 1691 206 85 56 chr3 107706435 107707064 -51892719 - BGLII_B LTR ERVK 0 553 11 3 1406 311 286 69 73 chr3 107707065 107707269 -51892514 - L1M4c LINE L1 -4077 2307 2105 3 1406 810 282 44 0 chr3 107707520 107707726 -51892057 - B3 SINE B2 0 216 2 3 1406 2183 141 97 25 chr3 107707769 107708162 -51891621 - MTC LTR MaLR 0 421 1 3 1406 2072 223 46 15 chr3 107709047 107709525 -51890258 - RLTR16 LTR ERVK -12 493 1 3 1406 192 311 54 32 chr3 107710018 107710111 -51889672 - MIRb SINE MIR -87 181 87 3 1406 203 372 11 11 chr3 107711403 107711498 -51888285 + MIRb SINE MIR 163 257 -11 3 1406 453 147 0 0 chr3 107713902 107714011 -51885772 + (CAGA)n Simple_repeat Simple_repeat 4 112 0 3 1406 215 61 0 29 chr3 107714310 107714344 -51885439 + (CCCCCA)n Simple_repeat Simple_repeat 2 34 0 3 1406 261 0 0 0 chr3 107715058 107715087 -51884696 + (T)n Simple_repeat Simple_repeat 1 29 0 3 1406 873 78 0 0 chr3 107715087 107715202 -51884581 - B1_Mm SINE Alu 0 147 33 3 1406 964 94 4 233 chr3 107715772 107716021 -51883762 + B2_Mm2 SINE B2 2 193 -2 3 1406 1540 199 137 17 chr3 107716024 107716381 -51883402 + MTD LTR MaLR 2 401 -18 3 1406 745 230 13 7 chr3 107716512 107716661 -51883122 + B3A SINE B2 1 150 -48 3 1406 1283 185 9 0 chr3 107717581 107717792 -51881991 - B3 SINE B2 0 216 4 3 1406 201 39 0 0 chr3 107718057 107718083 -51881700 + (TC)n Simple_repeat Simple_repeat 1 26 0 3 1406 1138 98 0 0 chr3 107718083 107718226 -51881557 - B1_Mus1 SINE Alu -5 143 1 3 1406 1304 87 0 0 chr3 107718254 107718427 -51881356 + B2_Mm2 SINE B2 2 174 -21 3 1406 1284 89 0 0 chr3 107718907 107719087 -51880696 + (TTCTC)n Simple_repeat Simple_repeat 1 180 0 3 1406 195 42 0 0 chr3 107719087 107719111 -51880672 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 3 1406 467 311 10 45 chr3 107719370 107719569 -51880214 + MER34-int LTR ERV1 760 951 -7256 3 1406 1180 22 0 0 chr3 107719910 107720045 -51879738 + B1_Mm SINE Alu 1 135 -12 3 1406 477 0 0 0 chr3 107720046 107720099 -51879684 + (TAAA)n Simple_repeat Simple_repeat 2 54 0 3 1406 27 73 0 0 chr3 107720509 107720564 -51879219 + AT_rich Low_complexity Low_complexity 1 55 0 3 1406 231 238 0 0 chr3 107720564 107720606 -51879177 - tRNA-Ala-GCY_ tRNA tRNA -18 57 16 3 1406 230 266 78 0 chr3 107720799 107720863 -51878920 + ID4_ SINE ID 1 69 -14 3 1406 333 68 0 0 chr3 107720881 107720925 -51878858 + (CA)n Simple_repeat Simple_repeat 1 44 0 3 1406 944 155 47 23 chr3 107721032 107721204 -51878579 + B2_Mm2 SINE B2 1 176 -19 3 1406 300 119 0 0 chr3 107721362 107721421 -51878362 + (GA)n Simple_repeat Simple_repeat 1 59 0 3 1406 513 285 29 21 chr3 107721636 107721776 -51878007 - ID_B1 SINE B4 0 224 84 3 1406 553 313 55 5 chr3 107721950 107722149 -51877634 + MTC LTR MaLR 17 225 -196 3 1406 2935 133 27 96 chr3 107722718 107723301 -51876482 + RLTR20B3 LTR ERVK 8 550 -27 3 1406 483 208 84 2 chr3 107724115 107724265 -51875518 + RLTR28B LTR ERVL 9 178 -346 3 1406 292 305 111 68 chr3 107725922 107726112 -51873671 - RLTR31_Mur LTR ERVK 0 553 356 3 1406 561 80 0 0 chr3 107726196 107726284 -51873499 + (TC)n Simple_repeat Simple_repeat 1 88 0 3 1406 387 0 0 0 chr3 107726284 107726327 -51873456 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 1406 180 0 0 0 chr3 107726685 107726705 -51873078 + (A)n Simple_repeat Simple_repeat 1 20 0 3 1406 766 266 157 20 chr3 107726902 107727151 -51872632 + B4A SINE B4 8 290 -2 3 1406 273 129 14 28 chr3 107727175 107727247 -51872536 + (CA)n Simple_repeat Simple_repeat 1 71 0 3 1406 336 316 20 0 chr3 107727252 107727350 -51872433 - BC1_Mm scRNA scRNA -52 100 1 3 1406 301 325 46 34 chr3 107727884 107728059 -51871724 - L2a LINE L2 -6 3420 3244 3 1406 291 333 23 0 chr3 107728059 107728191 -51871592 - L1ME3B LINE L1 -12 6150 6016 3 1406 438 344 129 36 chr3 107728310 107728855 -51870928 - L1ME3B LINE L1 -365 5875 5270 3 1406 456 350 62 77 chr3 107729215 107729540 -51870243 - ORR1E LTR MaLR -13 346 27 3 1406 219 278 110 30 chr3 107730132 107730232 -51869551 - MIRc SINE MIR -149 119 12 3 1406 289 239 151 82 chr3 107731536 107731682 -51868101 + MIRb SINE MIR 102 257 -11 3 1406 414 108 0 0 chr3 107732884 107732949 -51866834 + (TG)n Simple_repeat Simple_repeat 1 65 0 3 1406 456 19 0 0 chr3 107734401 107734454 -51865329 + (CA)n Simple_repeat Simple_repeat 2 54 0 3 1406 258 338 113 0 chr3 107734808 107734959 -51864824 - MER20 DNA MER1_type -33 186 19 4 1406 433 258 45 98 chr3 107735559 107735692 -51864091 - B1F SINE Alu -21 126 1 4 1406 799 247 78 58 chr3 107737349 107737607 -51862176 + B4A SINE B4 1 263 -29 4 1406 591 15 0 0 chr3 107737609 107737677 -51862106 + (TG)n Simple_repeat Simple_repeat 1 68 0 4 1406 208 357 95 27 chr3 107737955 107738102 -51861681 + MIRb SINE MIR 33 189 -79 4 1406 252 0 0 0 chr3 107738393 107738421 -51861362 + (T)n Simple_repeat Simple_repeat 1 28 0 4 1406 183 80 0 0 chr3 107738671 107738696 -51861087 + (TC)n Simple_repeat Simple_repeat 1 25 0 4 1406 290 261 49 43 chr3 107739129 107739246 -51860537 + MLT1J2 LTR MaLR 257 399 -113 4 1406 887 305 53 35 chr3 107739468 107739750 -51860033 - B4A SINE B4 0 292 6 4 1406 3422 47 5 0 chr3 107740001 107740404 -51859379 - MTB_Mm LTR MaLR 0 407 3 4 1407 564 15 0 0 chr3 107741403 107741468 -51858315 + (TG)n Simple_repeat Simple_repeat 2 66 0 4 1407 554 262 27 7 chr3 107741470 107741616 -51858167 - B3A SINE B2 -49 149 1 4 1407 186 244 77 55 chr3 107742751 107742842 -51856941 + L3 LINE CR1 2257 2349 -2140 4 1407 248 367 19 24 chr3 107743621 107743836 -51855947 + MIRb SINE MIR 31 253 -15 4 1407 203 245 20 0 chr3 107746316 107746365 -51853418 + GA-rich Low_complexity Low_complexity 4 53 0 4 1407 1428 143 140 159 chr3 107747140 107747505 -51852278 - ORR1D1 LTR MaLR 0 374 17 4 1407 715 285 75 23 chr3 107747965 107748231 -51851552 + B4A SINE B4 1 280 -12 4 1407 189 0 0 0 chr3 107749192 107749213 -51850570 + (TCTG)n Simple_repeat Simple_repeat 2 22 0 4 1407 268 294 35 0 chr3 107749718 107749803 -51849980 + MLT1J2 LTR MaLR 277 364 -84 4 1407 443 350 43 73 chr3 107750525 107750895 -51848888 + ORR1E LTR MaLR 1 359 0 4 1407 419 301 20 10 chr3 107750949 107751144 -51848639 - L1MB3 LINE L1 -314 5869 5673 4 1407 500 242 175 27 chr3 107751144 107751327 -51848456 + B3 SINE B2 1 210 -6 4 1407 491 250 80 7 chr3 107751350 107751487 -51848296 + B1F SINE Alu 1 147 -2 4 1407 560 270 92 15 chr3 107751633 107751893 -51847890 - L1MB3 LINE L1 -524 5659 5380 4 1407 814 256 68 85 chr3 107752094 107752388 -51847395 + B4A SINE B4 2 290 -2 4 1407 234 263 0 17 chr3 107752389 107752447 -51847336 + CT-rich Low_complexity Low_complexity 2 58 0 4 1407 210 324 45 51 chr3 107753496 107753652 -51846131 + MIRb SINE MIR 99 253 -15 4 1407 205 339 17 0 chr3 107753966 107754025 -51845758 - L2 LINE L2 -510 2909 2850 4 1407 1258 113 38 0 chr3 107757210 107757395 -51842388 + B2_Mm1t SINE B2 2 193 0 4 1407 1648 204 71 0 chr3 107757698 107758051 -51841732 - ORR1C1 LTR MaLR 0 378 1 4 1407 2734 131 16 78 chr3 107758087 107758148 -51841635 + RLTR16 LTR ERVK 1 48 -457 4 1407 212 0 36 0 chr3 107758156 107758184 -51841599 + (TTG)n Simple_repeat Simple_repeat 2 30 0 4 1407 1254 34 0 7 chr3 107758184 107758322 -51841461 - B1_Mus2 SINE Alu -8 139 2 4 1407 2734 131 16 78 chr3 107758322 107758775 -51841008 + RLTR16 LTR ERVK 49 483 -22 4 1407 912 248 97 9 chr3 107758805 107758835 -51840948 + B4A SINE B4 10 41 -251 4 1407 1769 210 84 13 chr3 107758835 107759226 -51840557 - MTD LTR MaLR 0 419 1 4 1407 912 248 97 9 chr3 107759226 107759423 -51840360 + B4A SINE B4 42 257 -35 4 1407 207 0 0 0 chr3 107759439 107759462 -51840321 + (TG)n Simple_repeat Simple_repeat 1 23 0 4 1407 225 197 0 0 chr3 107760245 107760306 -51839477 + (CA)n Simple_repeat Simple_repeat 2 62 0 4 1407 402 235 6 16 chr3 107760326 107760508 -51839275 + (CA)n Simple_repeat Simple_repeat 1 180 0 4 1407 601 151 246 25 chr3 107760574 107760696 -51839087 + B1_Mur4 SINE Alu 2 150 0 4 1407 69 64 0 0 chr3 107760743 107760868 -51838915 + AT_rich Low_complexity Low_complexity 1 125 0 4 1407 22 0 0 0 chr3 107760907 107760929 -51838854 + AT_rich Low_complexity Low_complexity 1 22 0 4 1407 924 128 28 0 chr3 107761116 107761257 -51838526 + B1_Mur3 SINE Alu 5 149 0 4 1407 600 175 189 23 chr3 107761273 107761448 -51838335 + RMER1B Other Other 625 828 -238 4 1407 886 189 52 39 chr3 107761807 107762038 -51837745 + RMER1B Other Other 833 1066 0 4 1407 186 43 0 0 chr3 107762551 107762574 -51837209 + (CA)n Simple_repeat Simple_repeat 2 24 0 4 1407 257 231 66 42 chr3 107762626 107762726 -51837057 + B1F SINE Alu 28 119 -1 4 1407 225 94 0 0 chr3 107762734 107762766 -51837017 + (GGA)n Simple_repeat Simple_repeat 3 34 0 4 1407 26 0 0 0 chr3 107763346 107763372 -51836411 + AT_rich Low_complexity Low_complexity 1 26 0 4 1407 515 279 24 47 chr3 107764133 107764302 -51835481 + B3A SINE B2 32 196 -2 4 1407 313 217 29 0 chr3 107764304 107764373 -51835410 + B1_Mur3 SINE Alu 2 72 -77 4 1407 21 36 0 0 chr3 107764758 107764786 -51834997 + AT_rich Low_complexity Low_complexity 1 28 0 4 1407 237 257 127 127 chr3 107765327 107765492 -51834291 - MLT2B2 LTR ERVL -3 559 395 4 1407 654 304 65 4 chr3 107765554 107765785 -51833998 - MLT2B2 LTR ERVL -252 263 19 4 1407 440 197 14 27 chr3 107767551 107767697 -51832086 + CT-rich Low_complexity Low_complexity 1 144 0 4 1407 330 241 41 82 chr3 107768417 107768539 -51831244 + L1MDa LINE L1 2385 2501 -4132 4 1407 1922 157 132 11 chr3 107768597 107768952 -51830831 + RMER10B LTR ERVL 1 398 0 4 1407 918 268 35 25 chr3 107769851 107770134 -51829649 - B4A SINE B4 -6 286 1 4 1407 497 257 7 48 chr3 107771365 107771512 -51828271 - B1_Mus1 SINE Alu -2 146 6 4 1407 316 134 884 0 chr3 107774704 107774790 -51824993 + RMER6A LTR ERVK 1 162 -594 4 1407 283 366 8 0 chr3 107775769 107775903 -51823880 + GA-rich Low_complexity Low_complexity 2 136 0 4 1407 830 275 30 15 chr3 107776132 107776335 -51823448 + ID_B1 SINE B4 8 213 -11 4 1407 249 293 30 89 chr3 107776966 107777119 -51822664 - MIR SINE MIR -139 137 1 4 1407 250 243 0 14 chr3 107777830 107777901 -51821882 + CT-rich Low_complexity Low_complexity 1 70 0 4 1407 3004 50 49 10 chr3 107777963 107778348 -51821435 + MTB LTR MaLR 1 400 0 4 1407 252 0 0 0 chr3 107779102 107779130 -51820653 + (TTTG)n Simple_repeat Simple_repeat 4 31 0 4 1407 361 282 0 0 chr3 107779176 107779247 -51820536 - RSINE1 SINE B4 -88 77 7 4 1407 211 158 0 0 chr3 107779760 107779798 -51819985 + PB1D7 SINE Alu 2 39 -81 4 1407 669 200 40 47 chr3 107780001 107780211 -51819572 + B3A SINE B2 3 216 0 4 1407 282 213 59 85 chr3 107780415 107780438 -51819345 + MT2B LTR ERVL 137 156 -445 4 1407 547 154 0 80 chr3 107780438 107780551 -51819232 + B1_Mus1 SINE Alu 2 105 -43 4 1407 518 126 18 0 chr3 107781322 107781433 -51818350 + (TCTG)n Simple_repeat Simple_repeat 2 114 0 4 1407 4610 91 44 0 chr3 107781633 107782269 -51817514 + L1_Mus4 LINE L1 5953 6616 -20 4 1407 477 282 22 60 chr3 107783730 107783915 -51815868 + ID_B1 SINE B4 40 217 -7 4 1407 641 181 220 0 chr3 107783927 107784104 -51815679 + B3 SINE B2 1 216 0 4 1407 560 14 14 0 chr3 107784132 107784201 -51815582 + (GA)n Simple_repeat Simple_repeat 1 70 0 4 1407 234 0 0 0 chr3 107785426 107785452 -51814331 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 4 1407 187 359 64 0 chr3 107789344 107789422 -51810361 + L4 LINE RTE 221 303 -1726 4 1407 670 325 124 7 chr3 107789838 107790257 -51809526 + L1MA8 LINE L1 5360 5827 -464 4 1407 1246 95 12 0 chr3 107790297 107790466 -51809317 + B2_Mm2 SINE B2 1 171 -24 4 1407 38625 12 0 7 chr3 107790564 107795532 -51804251 + L1Md_A LINE L1 663 5586 -297 4 1407 8981 14 0 0 chr3 107795532 107796528 -51803255 + L1Md_A LINE L1 5587 6582 0 4 1407 323 294 88 23 chr3 107796541 107796786 -51802997 + L1_Rod LINE L1 5013 5279 -864 4 1407 328 265 83 12 chr3 107796792 107796876 -51802907 + B1F1 SINE Alu 1 90 -59 4 1407 1887 119 78 18 chr3 107796878 107796996 -51802787 - BGLII_A LTR ERVK 0 445 331 4 1407 2447 120 41 134 chr3 107796996 107797527 -51802256 + RLTR45 LTR ERVK 1 482 0 4 1407 1887 119 78 18 chr3 107797527 107797742 -51802041 - BGLII_A LTR ERVK -115 330 92 4 1407 1710 26 0 0 chr3 107797744 107797936 -51801847 + B2_Mm1a SINE B2 2 193 0 4 1407 206 26 0 136 chr3 107797952 107797996 -51801787 + A-rich Low_complexity Low_complexity 1 38 0 4 1407 516 146 62 10 chr3 107797996 107798093 -51801690 - RLTR17 LTR ERVK -590 102 1 4 1407 243 187 131 81 chr3 107798321 107798420 -51801363 + L1MA7 LINE L1 6149 6252 -39 4 1407 390 152 17 0 chr3 107798484 107798543 -51801240 + B3A SINE B2 3 62 -136 4 1407 5697 103 40 25 chr3 107798663 107799551 -51800232 - RLTR13D6 LTR ERVK 0 902 1 4 1407 345 100 0 0 chr3 107799557 107799607 -51800176 + (GA)n Simple_repeat Simple_repeat 1 50 0 4 1407 277 303 108 72 chr3 107799744 107799890 -51799893 + B3A SINE B2 44 203 -13 4 1407 189 0 0 0 chr3 107799890 107799911 -51799872 + (TC)n Simple_repeat Simple_repeat 1 21 0 4 1407 198 0 0 0 chr3 107799911 107799932 -51799851 + (CA)n Simple_repeat Simple_repeat 1 22 0 4 1407 263 303 108 72 chr3 107799932 107799951 -51799832 + B3 SINE B2 204 215 -1 4 1407 246 49 0 0 chr3 107800053 107800088 -51799695 + L1M2 LINE L1 2950 3011 -3132 4 1407 4293 150 57 32 chr3 107800102 107800975 -51798808 - RMER17A2 LTR ERVK -11 895 1 4 1407 1413 236 36 23 chr3 107800983 107801425 -51798358 + L1_Rod LINE L1 3007 3454 -2393 4 1407 381 238 54 96 chr3 107801445 107801612 -51798171 + RMER10A LTR ERVL 80 265 -177 4 1407 405 210 88 77 chr3 107801917 107802098 -51797685 + RLTR23 LTR ERV1 244 426 -4 4 1407 539 247 70 57 chr3 107802083 107802311 -51797472 + RMER10A LTR ERVL 208 438 -4 4 1407 23 0 0 0 chr3 107802838 107802861 -51796922 + AT_rich Low_complexity Low_complexity 1 23 0 4 1407 2133 261 88 20 chr3 107802869 107803099 -51796684 + L1_Mur3 LINE L1 3482 3717 -2163 4 1407 4329 23 0 0 chr3 107803099 107803581 -51796202 + LTRIS_Mm LTR ERV1 1 482 0 4 1407 2133 261 88 20 chr3 107803581 107804232 -51795551 + L1_Mur3 LINE L1 3718 4423 -1457 4 1407 331 70 0 0 chr3 107804433 107804476 -51795307 + B1_Mur4 SINE Alu 2 44 -106 4 1407 182 105 26 0 chr3 107804477 107804515 -51795268 + (TA)n Simple_repeat Simple_repeat 2 40 0 5 1407 253 270 0 31 chr3 107804573 107804638 -51795145 + RLTR25A LTR ERVK 510 572 -531 5 1407 740 89 0 0 chr3 107804586 107804687 -51795096 + B1_Mus2 SINE Alu 47 147 0 5 1407 1431 265 147 49 chr3 107804691 107805465 -51794318 + L1_Rod LINE L1 4402 5251 -596 4 1407 5439 204 88 12 chr3 107805448 107806688 -51793095 + Lx9 LINE L1 6138 7471 -173 5 1407 255 248 48 137 chr3 107806706 107806874 -51792909 + B4A SINE B4 69 221 -71 5 1407 855 140 0 59 chr3 107806726 107806878 -51792905 + B1_Mur4 SINE Alu 6 148 -2 5 1407 329 141 0 15 chr3 107806891 107806956 -51792827 + Lx9 LINE L1 7532 7595 -49 5 1407 1918 244 42 20 chr3 107807221 107807727 -51792056 + Lx7 LINE L1 560 1076 -6652 5 1407 3529 186 55 11 chr3 107807723 107808379 -51791404 + RMER1B Other Other 377 1061 -5 5 1407 6195 201 14 36 chr3 107808391 107810100 -51789683 + Lx7 LINE L1 5099 6775 -921 5 1407 3191 12 0 0 chr3 107810100 107810445 -51789338 + ORR1A0 LTR MaLR 2 346 0 5 1407 6195 207 22 45 chr3 107810445 107811131 -51788652 + Lx7 LINE L1 6773 7423 -37 5 1407 180 0 0 0 chr3 107811131 107811151 -51788632 + (TTTTA)n Simple_repeat Simple_repeat 5 24 0 5 1407 351 0 0 0 chr3 107811151 107811190 -51788593 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 5 1407 1293 7 0 0 chr3 107811190 107811333 -51788450 - B1_Mm SINE Alu -3 144 2 5 1407 225 103 0 0 chr3 107811333 107811372 -51788411 + Lx6 LINE L1 7410 7448 -12 5 1407 804 121 49 37 chr3 107812628 107812801 -51786982 + B1_Mur3 SINE Alu 2 150 0 5 1407 599 39 13 0 chr3 107812815 107812893 -51786890 + (GGAA)n Simple_repeat Simple_repeat 2 80 0 5 1407 375 141 0 0 chr3 107813006 107813070 -51786713 + (TCTG)n Simple_repeat Simple_repeat 3 66 0 5 1407 373 302 135 62 chr3 107813707 107814011 -51785772 - MLT2B2 LTR ERVL 0 515 190 5 1407 841 227 44 10 chr3 107814036 107814241 -51785542 - B3 SINE B2 -4 212 1 5 1407 987 126 189 0 chr3 107814806 107814996 -51784787 - URR1A DNA MER1_type 0 226 1 5 1407 270 239 11 6 chr3 107815959 107816136 -51783647 + (CA)n Simple_repeat Simple_repeat 1 178 0 5 1407 334 237 66 0 chr3 107816696 107816772 -51783011 + BC1_Mm scRNA scRNA 3 83 -69 5 1407 247 255 0 0 chr3 107816772 107816819 -51782964 + polypurine Low_complexity Low_complexity 1 47 0 5 1407 208 241 0 0 chr3 107817054 107817112 -51782671 + (CA)n Simple_repeat Simple_repeat 1 58 0 5 1407 251 296 50 10 chr3 107817446 107817545 -51782238 + MIR SINE MIR 87 189 -73 5 1407 709 317 33 73 chr3 107818636 107818908 -51780875 - B4A SINE B4 -5 287 27 5 1407 182 171 24 0 chr3 107820466 107820507 -51779276 + (CA)n Simple_repeat Simple_repeat 1 42 0 5 1407 1108 52 0 0 chr3 107824108 107824244 -51775539 + B1_Mus2 SINE Alu 9 144 -3 5 1407 513 0 0 0 chr3 107824244 107824301 -51775482 + (GA)n Simple_repeat Simple_repeat 2 58 0 5 1407 637 277 38 19 chr3 107824309 107824519 -51775264 + ID_B1 SINE B4 1 214 -10 5 1407 28 0 0 0 chr3 107824923 107824951 -51774832 + AT_rich Low_complexity Low_complexity 1 28 0 5 1407 284 289 108 8 chr3 107825103 107825232 -51774551 - MIR SINE MIR -85 177 36 5 1407 410 167 0 12 chr3 107825999 107826084 -51773699 + C-rich Low_complexity Low_complexity 5 88 0 5 1407 289 314 11 55 chr3 107826543 107826634 -51773149 - MLT1A0 LTR MaLR -256 109 23 5 1407 465 206 62 52 chr3 107826648 107826818 -51772965 - B3 SINE B2 -7 186 23 5 1407 371 148 0 0 chr3 107826824 107826878 -51772905 - MTD LTR MaLR -4 415 362 5 1407 790 166 58 0 chr3 107826874 107827013 -51772770 - MTC LTR MaLR -274 147 1 5 1407 731 267 19 1 chr3 107827639 107827801 -51771982 + B3A SINE B2 5 168 -30 5 1407 402 39 0 0 chr3 107827801 107827853 -51771930 + (CA)n Simple_repeat Simple_repeat 1 52 0 5 1407 404 310 20 89 chr3 107827853 107827892 -51771891 + B2_Mm2 SINE B2 154 192 -3 5 1407 202 150 0 24 chr3 107827902 107827943 -51771840 + A-rich Low_complexity Low_complexity 2 41 0 5 1407 189 214 0 0 chr3 107828766 107828808 -51770975 + (CA)n Simple_repeat Simple_repeat 1 42 0 5 1407 1204 226 179 20 chr3 107828828 107828940 -51770843 + MTD LTR MaLR 6 128 -291 5 1407 182 37 37 0 chr3 107828940 107828967 -51770816 + (ATTG)n Simple_repeat Simple_repeat 3 30 0 5 1407 1204 226 179 20 chr3 107828967 107829211 -51770572 + MTD LTR MaLR 129 418 -1 5 1407 340 311 133 0 chr3 107829215 107829350 -51770433 - L1M3 LINE L1 -727 5453 5301 5 1407 713 212 7 7 chr3 107829449 107829587 -51770196 - B1_Mur2 SINE Alu -2 147 10 5 1407 309 287 130 0 chr3 107829602 107829710 -51770073 + MER58B DNA MER1_type 216 337 -4 5 1407 2429 79 6 6 chr3 107830487 107830806 -51768977 - ORR1A2 LTR MaLR -8 319 1 5 1407 245 75 25 0 chr3 107834847 107834887 -51764896 + (CA)n Simple_repeat Simple_repeat 2 42 0 5 1407 674 284 122 3 chr3 107835587 107835968 -51763815 + L1MB3 LINE L1 5389 5831 -352 5 1407 367 286 273 10 chr3 107835957 107836268 -51763515 + L1MA5 LINE L1 4888 5280 -863 5 1407 344 336 8 65 chr3 107836273 107836397 -51763386 + PB1D10 SINE Alu 1 117 0 5 1407 304 261 91 1 chr3 107836479 107836589 -51763194 + L1MA5 LINE L1 5355 5508 -792 5 1407 185 0 40 0 chr3 107836660 107836685 -51763098 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 5 1407 439 293 153 0 chr3 107836722 107836937 -51762846 + L1MA5 LINE L1 5687 5934 -366 5 1407 354 271 53 23 chr3 107837669 107837801 -51761982 + L1MA6 LINE L1 5817 5952 -351 5 1407 220 340 33 0 chr3 107837816 107837922 -51761861 + B1F2 SINE Alu 1 111 -9 5 1407 500 249 63 117 chr3 107837990 107838290 -51761493 + L1MA6 LINE L1 6012 6295 -5 5 1407 517 270 209 0 chr3 107838328 107838476 -51761307 + B3A SINE B2 4 182 -16 5 1407 21 36 0 0 chr3 107838612 107838640 -51761143 + AT_rich Low_complexity Low_complexity 1 28 0 5 1407 311 318 142 7 chr3 107838674 107838829 -51760954 + MER20 DNA MER1_type 13 188 -31 5 1407 816 182 225 11 chr3 107839102 107839280 -51760503 - B3 SINE B2 0 216 1 5 1407 1219 184 9 5 chr3 107839318 107839531 -51760252 + B3 SINE B2 3 216 0 5 1407 227 171 0 0 chr3 107839849 107839890 -51759893 + C-rich Low_complexity Low_complexity 5 45 0 5 1407 521 302 143 21 chr3 107839977 107840312 -51759471 - MLT2B1 LTR ERVL 0 520 145 5 1407 454 197 110 148 chr3 107840675 107840830 -51758953 + B1_Mur2 SINE Alu 1 149 0 5 1407 573 15 0 0 chr3 107840839 107840905 -51758878 + (GGAA)n Simple_repeat Simple_repeat 3 68 0 5 1407 216 0 0 0 chr3 107841559 107841583 -51758200 + (ATTG)n Simple_repeat Simple_repeat 2 25 0 5 1407 1077 91 21 0 chr3 107841589 107841732 -51758051 - B1_Mm SINE Alu -1 146 1 5 1407 4961 171 165 7 chr3 107841876 107841991 -51757792 - Lx9 LINE L1 0 7644 7476 5 1407 302 67 22 0 chr3 107841991 107842036 -51757747 + (TA)n Simple_repeat Simple_repeat 2 47 0 5 1407 4961 171 165 7 chr3 107842036 107843028 -51756755 - Lx9 LINE L1 -169 7475 6362 5 1407 380 323 108 15 chr3 107843157 107843352 -51756431 + HAL1 LINE L1 1459 1671 -836 5 1407 260 257 79 44 chr3 107844285 107844399 -51755384 - MIR3 SINE MIR -84 124 7 5 1407 192 238 53 106 chr3 107844758 107844852 -51754931 + L2 LINE L2 67 155 -3264 5 1407 211 367 44 33 chr3 107844793 107844976 -51754807 + MIRb SINE MIR 65 249 -19 5 1407 1370 165 42 0 chr3 107848663 107848899 -51750884 + RLTR40 LTR ERVK 1 246 -571 5 1407 778 208 7 46 chr3 107848984 107849135 -51750648 - B1_Mur3 SINE Alu -2 147 3 5 1407 338 157 14 28 chr3 107849322 107849394 -51750389 - PB1D9 SINE Alu 0 120 50 5 1407 607 227 34 12 chr3 107850398 107850540 -51749243 + B3A SINE B2 3 157 -36 5 1407 270 0 0 0 chr3 107850540 107850570 -51749213 + (CATA)n Simple_repeat Simple_repeat 2 31 0 5 1407 364 284 112 41 chr3 107850570 107850596 -51749187 + B2_Mm1a SINE B2 158 183 -10 5 1407 897 170 7 7 chr3 107850603 107850751 -51749032 + B1_Mur4 SINE Alu 3 150 0 5 1407 267 362 23 15 chr3 107851034 107851166 -51748617 - MER110-int LTR ERV1 -2068 2579 2447 5 1407 513 239 14 61 chr3 107851926 107852073 -51747710 - B1F SINE Alu -1 148 9 5 1407 909 201 41 82 chr3 107852255 107852450 -51747333 - B3A SINE B2 -8 187 1 5 1407 956 106 0 8 chr3 107852470 107852603 -51747180 - B2_Mm2 SINE B2 -63 132 1 5 1407 3061 48 60 13 chr3 107852812 107853194 -51746589 + MTB LTR MaLR 1 400 0 5 1407 417 245 20 0 chr3 107853275 107853377 -51746406 - PB1D10 SINE Alu -9 108 5 5 1407 1188 300 126 22 chr3 107853386 107854115 -51745668 - L1MB1 LINE L1 -59 6130 5326 5 1407 498 257 27 24 chr3 107854112 107854368 -51745415 + L1M3 LINE L1 3812 4061 -2079 5 1407 843 228 58 0 chr3 107854374 107854545 -51745238 - B3 SINE B2 -35 181 1 5 1407 345 299 94 41 chr3 107854545 107854716 -51745067 + L1M3 LINE L1 4058 4237 -1906 5 1407 338 233 0 27 chr3 107854718 107854793 -51744990 + ID4_ SINE ID 10 82 -1 5 1407 645 320 17 0 chr3 107854804 107854982 -51744801 + B3A SINE B2 2 182 -16 5 1407 505 224 45 167 chr3 107855013 107855211 -51744572 + B3A SINE B2 24 197 -1 5 1407 591 272 115 21 chr3 107855254 107855568 -51744215 + L1M3 LINE L1 4934 5299 -847 5 1407 930 237 43 0 chr3 107855877 107856088 -51743695 - ID_B1 SINE B4 -4 220 1 5 1407 404 281 121 8 chr3 107856094 107856334 -51743449 - L1MA6 LINE L1 -1 6299 6033 5 1407 24 0 0 0 chr3 107856453 107856477 -51743306 + AT_rich Low_complexity Low_complexity 1 24 0 5 1407 378 204 46 30 chr3 107856738 107856869 -51742914 + Ricksha DNA MuDR 13 180 -3066 5 1407 432 244 17 0 chr3 107856951 107857066 -51742717 + Ricksha DNA MuDR 384 500 -2746 5 1407 410 298 50 0 chr3 107857522 107857663 -51742120 + Ricksha DNA MuDR 507 654 -2592 5 1407 4445 62 22 2 chr3 107857663 107858216 -51741567 - LTRIS2 LTR ERV1 0 564 1 5 1407 685 185 6 6 chr3 107858247 107858421 -51741362 + CT-rich Low_complexity Low_complexity 4 177 0 5 1407 949 265 45 39 chr3 107858452 107858809 -51740974 + Ricksha DNA MuDR 2425 2783 -463 5 1407 1095 58 14 0 chr3 107858968 107859106 -51740677 - B1_Mm SINE Alu 0 147 8 5 1407 247 277 19 63 chr3 107859006 107859164 -51740619 - ORR1B1-int LTR MaLR -755 754 604 5 1407 646 175 11 18 chr3 107859134 107859269 -51740514 - B1_Mus2 SINE Alu 0 150 15 5 1407 3057 157 20 2 chr3 107859425 107859929 -51739854 + RMER20A LTR ERVK 4 516 0 5 1407 401 142 49 79 chr3 107859948 107860066 -51739717 - PB1D9 SINE Alu -5 122 11 5 1407 225 196 137 0 chr3 107860347 107860398 -51739385 + ORR1E LTR MaLR 1 58 -301 5 1407 931 174 0 7 chr3 107860512 107860662 -51739121 - B1_Mur4 SINE Alu 0 150 2 6 1407 422 296 122 41 chr3 107860663 107860860 -51738923 + ORR1E LTR MaLR 141 353 -6 5 1407 387 221 42 10 chr3 107860924 107861020 -51738763 + PB1D9 SINE Alu 22 120 0 6 1407 554 256 35 47 chr3 107861303 107861475 -51738308 + ORR1E LTR MaLR 1 170 -189 6 1407 306 0 0 0 chr3 107861777 107861811 -51737972 + (CA)n Simple_repeat Simple_repeat 2 35 0 6 1407 1252 94 44 6 chr3 107861962 107862143 -51737640 - B2_Mm2 SINE B2 -7 188 1 6 1407 916 255 30 108 chr3 107862183 107862517 -51737266 - ORR1D2 LTR MaLR 0 370 63 6 1407 886 269 12 12 chr3 107862536 107862777 -51737006 + SRV_MM-int LTR ERVK 1884 2124 -4043 6 1407 1632 89 128 29 chr3 107862898 107863189 -51736594 - ETnERV2-int LTR ERVK -6003 1403 1076 6 1407 369 0 0 0 chr3 107863189 107863230 -51736553 + (TTTTA)n Simple_repeat Simple_repeat 4 44 0 6 1407 1632 225 63 77 chr3 107863230 107863555 -51736228 - ETnERV2-int LTR ERVK -6331 1075 1060 6 1407 378 213 0 51 chr3 107863557 107863636 -51736147 - RLTR9F LTR ERVK 0 415 341 6 1407 643 118 0 68 chr3 107863614 107863732 -51736051 + RLTR9D LTR ERVK 284 393 -10 6 1407 541 206 271 33 chr3 107863746 107863897 -51735886 - B3A SINE B2 -11 187 1 6 1407 529 317 0 31 chr3 107863921 107864048 -51735735 + RSINE1 SINE B4 43 165 0 6 1407 569 234 68 6 chr3 107864072 107864235 -51735548 + Ricksha DNA MuDR 2816 2988 -258 5 1407 27 87 0 0 chr3 107865192 107865261 -51734522 + AT_rich Low_complexity Low_complexity 1 69 0 6 1407 501 167 0 0 chr3 107866135 107866237 -51733546 + (TG)n Simple_repeat Simple_repeat 1 102 0 6 1407 632 192 92 8 chr3 107866264 107866395 -51733388 + B1_Mus1 SINE Alu 1 142 -6 6 1407 1601 27 6 0 chr3 107866402 107866585 -51733198 + B2_Mm1t SINE B2 2 185 -8 6 1407 4069 188 67 109 chr3 107867058 107868333 -51731450 + RMER1A Other Other 2 1026 -4 6 1407 240 35 0 0 chr3 107868343 107868372 -51731411 + (GA)n Simple_repeat Simple_repeat 2 30 0 6 1407 1465 214 62 3 chr3 107868686 107868991 -51730792 + RMER1C Other Other 664 986 -356 6 1407 198 0 0 0 chr3 107869001 107869023 -51730760 + (CAAAA)n Simple_repeat Simple_repeat 1 22 0 6 1407 459 161 7 157 chr3 107869053 107869193 -51730590 + MT2B LTR ERVL 139 257 -344 6 1407 509 264 31 81 chr3 107869074 107869091 -51730692 + B4 SINE B4 71 79 -213 6 1407 1044 90 14 7 chr3 107869091 107869236 -51730547 + B1_Mus1 SINE Alu 3 148 0 6 1407 228 42 19 77 chr3 107869238 107869290 -51730493 + (TAAAAA)n Simple_repeat Simple_repeat 4 52 0 6 1407 1281 87 16 31 chr3 107869301 107869335 -51730448 + B2_Mm2 SINE B2 1 35 -160 6 1407 4349 43 101 0 chr3 107869335 107869868 -51729915 - LTRIS_Mus LTR ERV1 0 587 1 6 1407 1281 106 23 36 chr3 107869868 107870047 -51729736 + B2_Mm2 SINE B2 36 216 0 6 1407 1065 196 62 24 chr3 107870047 107870170 -51729613 + RMER1C Other Other 1043 1173 -169 6 1407 369 0 0 0 chr3 107870170 107870211 -51729572 + (TCC)n Simple_repeat Simple_repeat 2 42 0 6 1407 1065 196 62 24 chr3 107870211 107870375 -51729408 + RMER1C Other Other 1174 1340 -2 6 1407 244 250 87 14 chr3 107870564 107870633 -51729150 + MTEb LTR MaLR 289 362 -17 6 1407 1295 20 7 0 chr3 107870844 107870990 -51728793 - B1_Mus1 SINE Alu 0 148 2 6 1407 1438 67 6 0 chr3 107871020 107871199 -51728584 + B2_Mm1a SINE B2 3 182 -11 6 1407 431 248 262 26 chr3 107871216 107871423 -51728360 - B4 SINE B4 -20 272 1 6 1407 874 200 151 0 chr3 107871455 107871640 -51728143 - B3 SINE B2 -1 215 3 6 1407 644 148 18 27 chr3 107871672 107871783 -51728000 - B1_Mur3 SINE Alu 0 149 40 6 1407 261 218 59 82 chr3 107871716 107871801 -51727982 - RLTR25B LTR ERVK -519 509 427 6 1407 325 179 0 0 chr3 107871828 107871884 -51727899 - B1_Mur4 SINE Alu -94 56 1 6 1407 473 304 14 7 chr3 107872114 107872253 -51727530 + B1F SINE Alu 2 141 -8 6 1408 1050 279 95 26 chr3 107872666 107873089 -51726694 - ORSL-2b DNA Tip100 -1 507 56 6 1408 235 258 149 41 chr3 107873903 107874044 -51725739 - MIR SINE MIR -70 198 32 6 1408 473 305 78 19 chr3 107874093 107874247 -51725536 - RSINE1 SINE B4 0 165 3 6 1408 265 202 234 53 chr3 107874409 107874503 -51725280 + PB1D10 SINE Alu 7 117 0 6 1408 367 273 220 0 chr3 107874506 107874638 -51725145 + RSINE1 SINE B4 3 163 -2 6 1408 1250 41 0 0 chr3 107875402 107875548 -51724235 + B1_Mus2 SINE Alu 2 147 0 6 1408 201 216 19 19 chr3 107876523 107876575 -51723208 + MER5B DNA MER1_type 90 141 -37 6 1408 538 306 74 46 chr3 107880708 107880992 -51718791 + B4A SINE B4 1 292 0 6 1408 228 118 0 0 chr3 107880999 107881033 -51718750 + (CA)n Simple_repeat Simple_repeat 2 35 0 6 1408 595 208 0 19 chr3 107881041 107881198 -51718585 + (CATATA)n Simple_repeat Simple_repeat 4 157 0 6 1408 483 228 61 9 chr3 107881202 107881317 -51718466 + RSINE1 SINE B4 8 128 -37 6 1408 53 47 0 36 chr3 107881341 107881452 -51718331 + AT_rich Low_complexity Low_complexity 1 107 0 6 1408 372 77 0 0 chr3 107884408 107884460 -51715323 + (CA)n Simple_repeat Simple_repeat 2 53 0 6 1408 608 168 0 74 chr3 107886376 107886498 -51713285 + PB1D9 SINE Alu 2 114 -6 6 1408 285 287 69 0 chr3 107886556 107886643 -51713140 - ID4 SINE ID -54 98 6 6 1408 409 274 26 34 chr3 107886648 107886765 -51713018 - PB1D10 SINE Alu 0 117 2 6 1408 233 250 73 65 chr3 107889722 107889846 -51709937 + MIRb SINE MIR 117 241 -27 6 1408 250 252 83 18 chr3 107891203 107891312 -51708471 + L1M5 LINE L1 5663 5778 -346 6 1408 207 0 0 0 chr3 107892750 107892773 -51707010 + (CA)n Simple_repeat Simple_repeat 1 23 0 6 1408 356 270 79 26 chr3 107894016 107894130 -51705653 + MER5B DNA MER1_type 7 126 -52 6 1408 522 125 83 0 chr3 107894125 107894221 -51705562 + B1_Mus1 SINE Alu 7 110 -38 6 1408 287 313 36 43 chr3 107894237 107894377 -51705406 + ID_B1 SINE B4 86 224 0 6 1408 272 290 152 0 chr3 107894650 107894788 -51704995 - MER5A1 DNA MER1_type -5 161 3 6 1408 635 179 395 0 chr3 107894798 107894960 -51704823 + URR1A DNA MER1_type 1 226 0 6 1408 237 154 247 82 chr3 107895385 107895470 -51704313 + B1_Mur1 SINE Alu 40 138 -11 6 1408 423 83 0 0 chr3 107895484 107895544 -51704239 + (CA)n Simple_repeat Simple_repeat 1 60 0 6 1408 198 0 0 0 chr3 107896963 107896985 -51702798 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 6 1408 536 248 67 0 chr3 107897504 107897653 -51702130 + MER20 DNA MER1_type 1 159 -60 6 1408 957 132 7 0 chr3 107897674 107897810 -51701973 + B1_Mus2 SINE Alu 1 137 -10 6 1408 435 63 0 0 chr3 107897829 107897892 -51701891 + (TAGA)n Simple_repeat Simple_repeat 4 66 0 6 1408 220 349 81 21 chr3 107899864 107900093 -51699690 - MIRb SINE MIR -27 241 5 6 1408 293 184 51 26 chr3 107900094 107900172 -51699611 - PB1D10 SINE Alu -2 115 36 6 1408 1120 112 187 0 chr3 107903245 107903432 -51696351 - URR1A DNA MER1_type -4 222 1 6 1408 212 262 98 0 chr3 107903974 107904035 -51695748 + MIRc SINE MIR 130 196 -72 6 1408 453 36 0 0 chr3 107904930 107904985 -51694798 + (CA)n Simple_repeat Simple_repeat 2 56 0 6 1408 262 214 54 0 chr3 107905234 107905290 -51694493 - Charlie4 DNA MER1_type -25 1936 1878 6 1408 328 363 0 26 chr3 107905297 107905413 -51694370 - PB1 SINE Alu -2 125 13 6 1408 1047 154 6 6 chr3 107905450 107905633 -51694150 - B3 SINE B2 -19 197 15 6 1408 210 223 192 50 chr3 107905752 107905851 -51693932 + PB1D9 SINE Alu 1 113 -7 6 1408 1218 54 0 0 chr3 107906534 107906681 -51693102 - B1_Mus2 SINE Alu 0 147 1 6 1408 434 254 9 0 chr3 107906690 107906804 -51692979 - PB1D9 SINE Alu -5 115 1 6 1408 388 229 109 9 chr3 107907296 107907406 -51692377 + B3 SINE B2 92 212 -4 6 1408 480 274 29 13 chr3 107907780 107907959 -51691824 + L1MB3 LINE L1 5975 6152 -22 6 1408 1235 41 7 0 chr3 107908020 107908167 -51691616 + B1_Mus1 SINE Alu 1 148 0 6 1408 249 128 0 0 chr3 107908834 107908881 -51690902 + (TGAG)n Simple_repeat Simple_repeat 4 50 0 6 1408 238 174 40 68 chr3 107912936 107913010 -51686773 - B1F SINE Alu -73 76 3 6 1408 236 174 0 0 chr3 107913349 107913395 -51686388 - B1_Mus2 SINE Alu 0 147 102 6 1408 383 262 47 0 chr3 107913403 107913510 -51686273 - RSINE1 SINE B4 -50 115 4 6 1408 395 241 46 0 chr3 107916068 107916155 -51683628 + PB1D10 SINE Alu 19 109 -8 6 1408 180 0 0 0 chr3 107916207 107916227 -51683556 + (CAT)n Simple_repeat Simple_repeat 2 21 0 6 1408 288 0 0 0 chr3 107916227 107916259 -51683524 + (CAG)n Simple_repeat Simple_repeat 1 32 0 6 1408 282 29 0 0 chr3 107916260 107916295 -51683488 + (TGGGGG)n Simple_repeat Simple_repeat 2 36 0 6 1408 189 0 0 0 chr3 107917239 107917260 -51682523 + (T)n Simple_repeat Simple_repeat 1 21 0 6 1408 1226 41 0 0 chr3 107917260 107917407 -51682376 - B1_Mus2 SINE Alu 0 147 1 6 1408 1061 29 0 14 chr3 107917581 107917721 -51682062 - B1_Mus1 SINE Alu 0 148 11 6 1408 602 227 57 0 chr3 107918482 107918623 -51681160 + B1F2 SINE Alu 1 149 0 6 1408 233 200 20 0 chr3 107919228 107919291 -51680492 + PB1D7 SINE Alu 57 127 0 6 1408 421 304 43 7 chr3 107919413 107919552 -51680231 + B1F2 SINE Alu 1 144 -5 6 1408 23 0 0 0 chr3 107920021 107920044 -51679739 + GC_rich Low_complexity Low_complexity 1 23 0 6 1408 338 274 95 15 chr3 107920305 107920442 -51679341 + B1F1 SINE Alu 2 149 0 6 1408 358 225 14 0 chr3 107920442 107920513 -51679270 + ID4 SINE ID 2 73 -10 6 1408 431 200 30 10 chr3 107920596 107920697 -51679086 + PB1D9 SINE Alu 8 110 -10 6 1408 414 79 0 0 chr3 107920730 107920793 -51678990 + (TG)n Simple_repeat Simple_repeat 2 64 0 6 1408 997 129 0 7 chr3 107921021 107921169 -51678614 - B1_Mus1 SINE Alu -1 147 1 7 1408 675 303 77 0 chr3 107921753 107922014 -51677769 + B4A SINE B4 2 282 -10 7 1408 212 194 0 0 chr3 107922054 107922090 -51677693 + ID4 SINE ID 4 39 -44 7 1408 967 116 14 7 chr3 107922446 107922593 -51677190 + B1_Mur4 SINE Alu 1 148 -2 7 1408 1120 36 50 0 chr3 107922694 107922834 -51676949 + B1_Mus1 SINE Alu 2 148 0 7 1408 632 297 54 71 chr3 107923186 107923483 -51676300 - B4A SINE B4 0 292 1 7 1408 528 16 0 0 chr3 107923489 107923550 -51676233 + (CCA)n Simple_repeat Simple_repeat 2 62 0 7 1408 605 268 88 81 chr3 107924191 107924463 -51675320 - B4 SINE B4 0 292 19 7 1408 1434 39 67 0 chr3 107924746 107924925 -51674858 + B2_Mm1a SINE B2 2 192 -1 7 1408 552 241 55 70 chr3 107925103 107925304 -51674479 + B3A SINE B2 1 198 0 7 1408 183 42 0 0 chr3 107926758 107926782 -51673001 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 7 1408 263 322 96 44 chr3 107927230 107927500 -51672283 + L2 LINE L2 1304 1587 -1832 7 1408 613 206 24 0 chr3 107927815 107927941 -51671842 - RSINE1 SINE B4 -35 130 2 7 1408 853 168 29 18 chr3 107928144 107928314 -51671469 - B2_Mm2 SINE B2 -23 172 1 7 1408 398 252 137 8 chr3 107928422 107928569 -51671214 - MIR SINE MIR -64 198 36 7 1408 259 232 83 104 chr3 107928581 107928773 -51671010 + L2 LINE L2 2334 2521 -898 7 1408 236 254 34 0 chr3 107928831 107928890 -51670893 - Charlie7 DNA MER1_type -2433 179 119 7 1408 1286 27 0 0 chr3 107928994 107929141 -51670642 - B1_Mm SINE Alu 0 147 1 7 1408 412 270 41 62 chr3 107929150 107929296 -51670487 - B1F2 SINE Alu -6 143 1 7 1408 236 355 22 22 chr3 107929360 107929498 -51670285 + L2 LINE L2 2895 3032 -387 7 1408 23 0 0 0 chr3 107930207 107930230 -51669553 + AT_rich Low_complexity Low_complexity 1 23 0 7 1408 246 32 0 0 chr3 107930291 107930322 -51669461 + (CA)n Simple_repeat Simple_repeat 1 31 0 7 1408 444 223 11 0 chr3 107930386 107930480 -51669303 + BC1_Mm scRNA scRNA 1 95 -57 7 1408 333 172 0 0 chr3 107930497 107930561 -51669222 + T-rich Low_complexity Low_complexity 1 64 0 7 1408 717 106 62 0 chr3 107930563 107930676 -51669107 - PB1D9 SINE Alu 0 120 1 7 1408 1716 174 77 19 chr3 107930950 107931325 -51668458 - MTC LTR MaLR -22 399 3 7 1408 261 0 0 0 chr3 107932289 107932318 -51667465 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 7 1408 246 273 67 48 chr3 107932815 107932919 -51666864 + MIR3 SINE MIR 63 168 -40 7 1408 321 233 17 0 chr3 107933290 107933350 -51666433 - RSINE1 SINE B4 -74 91 31 7 1408 242 304 12 37 chr3 107933451 107933533 -51666250 - B3 SINE B2 -99 117 38 7 1408 721 129 145 0 chr3 107933540 107933664 -51666119 + B1_Mur4 SINE Alu 1 142 -8 7 1408 504 0 0 0 chr3 107933847 107933903 -51665880 + (TC)n Simple_repeat Simple_repeat 1 56 0 7 1408 764 274 5 5 chr3 107933998 107934189 -51665594 + B3A SINE B2 1 191 -7 7 1408 250 247 86 49 chr3 107934204 107934285 -51665498 + B2_Mm2 SINE B2 2 85 -110 7 1408 348 264 182 0 chr3 107934213 107934334 -51665449 + RSINE1 SINE B4 13 155 -10 7 1408 816 169 173 6 chr3 107934358 107934537 -51665246 + B3 SINE B2 2 210 -6 7 1408 526 315 92 30 chr3 107935871 107936140 -51663643 + L1MA4 LINE L1 4810 5081 -796 7 1408 1397 275 73 27 chr3 107936191 107936818 -51662965 + L1MA4 LINE L1 5255 5904 -396 7 1408 378 0 0 0 chr3 107936848 107936890 -51662893 + (CA)n Simple_repeat Simple_repeat 2 43 0 7 1408 324 0 0 0 chr3 107936890 107936926 -51662857 + (TATG)n Simple_repeat Simple_repeat 2 37 0 7 1408 221 250 0 0 chr3 107937258 107937302 -51662481 + ID SINE ID 15 58 -166 7 1408 621 276 94 0 chr3 107937328 107937509 -51662274 + ID_B1 SINE B4 1 198 -26 7 1408 466 160 64 0 chr3 107937654 107937748 -51662035 + B1_Mus2 SINE Alu 43 142 -5 7 1408 366 212 48 48 chr3 107938802 107938906 -51660877 + B3A SINE B2 2 105 -93 7 1408 228 300 0 54 chr3 107938987 107939061 -51660722 + B1_Mus2 SINE Alu 1 70 -77 7 1408 302 104 134 0 chr3 107939286 107939353 -51660430 + PB1D10 SINE Alu 35 110 -7 7 1408 349 220 104 15 chr3 107939475 107939609 -51660174 + L1MD3 LINE L1 7728 7873 -122 7 1408 921 219 43 24 chr3 107939683 107939894 -51659889 - B3 SINE B2 0 216 2 7 1408 749 157 22 36 chr3 107939958 107940097 -51659686 - B1_Mur2 SINE Alu -8 141 5 7 1408 730 94 0 0 chr3 107940203 107940309 -51659474 + B2_Mm2 SINE B2 2 107 -88 7 1408 180 0 0 0 chr3 107940377 107940397 -51659386 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 7 1408 507 231 139 7 chr3 107941051 107941195 -51658588 + RSINE1 SINE B4 3 165 0 7 1408 526 213 41 25 chr3 107941270 107941397 -51658386 - B1_Mur4 SINE Alu -9 141 13 7 1408 306 0 0 0 chr3 107943619 107943653 -51656130 + (TG)n Simple_repeat Simple_repeat 2 35 0 7 1408 776 214 101 5 chr3 107944018 107944206 -51655577 + B3 SINE B2 1 206 -10 7 1408 820 221 0 20 chr3 107944238 107944390 -51655393 - B1_Mur4 SINE Alu -1 149 1 7 1408 347 358 113 5 chr3 107944852 107945074 -51654709 - MIRb SINE MIR -9 259 14 7 1408 1114 66 0 7 chr3 107945175 107945313 -51654470 + B1_Mm SINE Alu 5 141 -6 7 1408 180 0 0 0 chr3 107945315 107945335 -51654448 + (TAAAA)n Simple_repeat Simple_repeat 3 22 0 7 1408 345 260 55 46 chr3 107945500 107945609 -51654174 + PB1D10 SINE Alu 3 112 -5 7 1408 364 271 175 6 chr3 107945863 107946059 -51653724 - MIRb SINE MIR -7 255 23 7 1408 462 237 62 0 chr3 107946359 107946456 -51653327 - B3A SINE B2 -95 103 1 7 1408 32 0 0 0 chr3 107946760 107946792 -51652991 + AT_rich Low_complexity Low_complexity 1 32 0 7 1408 313 274 37 19 chr3 107946944 107947052 -51652731 + PB1D10 SINE Alu 6 115 -2 7 1408 1492 55 5 10 chr3 107947232 107947435 -51652348 + L1Md_F2 LINE L1 6381 6582 0 7 1408 204 312 15 15 chr3 107949890 107949955 -51649828 + L4 LINE RTE 82 146 -1883 7 1408 639 188 103 13 chr3 107950214 107950370 -51649413 - MIRb SINE MIR -17 251 82 7 1408 419 35 0 17 chr3 107950894 107950952 -51648831 + (TC)n Simple_repeat Simple_repeat 1 57 0 7 1408 191 216 78 0 chr3 107951465 107951516 -51648267 + L2c LINE L2 3282 3336 -51 7 1408 286 377 14 14 chr3 107954962 107955110 -51644673 - MIRb SINE MIR -35 233 86 7 1408 268 97 52 31 chr3 107955826 107955922 -51643861 + (TA)n Simple_repeat Simple_repeat 2 99 0 7 1408 309 302 37 8 chr3 107955976 107956101 -51643682 + MIR3 SINE MIR 83 205 -3 7 1408 188 241 0 122 chr3 107956174 107956264 -51643519 - MER5A DNA MER1_type -53 136 58 7 1408 286 263 67 50 chr3 107958077 107958197 -51641586 + MIR3 SINE MIR 64 185 -23 7 1408 367 281 52 81 chr3 107958350 107958524 -51641259 + MamRep1879 DNA hAT? 20 188 -28 7 1408 976 209 75 0 chr3 107958799 107959000 -51640783 - B3 SINE B2 0 216 1 7 1408 825 87 0 0 chr3 107959012 107959127 -51640656 + (TCCC)n Simple_repeat Simple_repeat 2 116 0 7 1408 823 176 14 14 chr3 107959138 107959282 -51640501 - B1_Mur4 SINE Alu -6 144 1 7 1408 1168 135 6 29 chr3 107960373 107960576 -51639207 - B2_Mm2 SINE B2 -8 208 2 7 1408 216 0 0 0 chr3 107960598 107960622 -51639161 + (TTTTTG)n Simple_repeat Simple_repeat 2 25 0 7 1408 284 295 0 0 chr3 107960646 107960707 -51639076 - PB1D7 SINE Alu -57 63 3 7 1408 216 204 18 18 chr3 107962015 107962070 -51637713 + C-rich Low_complexity Low_complexity 3 57 0 7 1408 203 276 161 54 chr3 107962157 107962287 -51637496 - MIRb SINE MIR -39 229 86 7 1408 196 261 206 0 chr3 107962575 107962667 -51637116 - MIR3 SINE MIR -15 193 83 7 1408 222 205 0 0 chr3 107962673 107962712 -51637071 + (CATG)n Simple_repeat Simple_repeat 2 40 0 7 1408 258 207 0 0 chr3 107962817 107962875 -51636908 + (TG)n Simple_repeat Simple_repeat 1 58 0 7 1408 424 261 55 55 chr3 107962876 107963095 -51636688 + RMER12 LTR ERVK 770 988 -334 7 1408 429 233 0 0 chr3 107963095 107963211 -51636572 + (TG)n Simple_repeat Simple_repeat 2 117 0 7 1408 702 240 19 27 chr3 107963235 107963398 -51636385 - RSINE1 SINE B4 -1 164 6 7 1408 204 179 0 0 chr3 107963449 107963488 -51636295 + GA-rich Low_complexity Low_complexity 5 43 0 7 1408 342 299 69 110 chr3 107963589 107963718 -51636065 - B4 SINE B4 -75 217 100 7 1408 870 189 0 33 chr3 107963718 107963871 -51635912 - B1_Mur2 SINE Alu -1 148 1 7 1408 342 299 69 110 chr3 107963871 107963959 -51635824 - B4 SINE B4 -193 99 9 7 1408 270 231 231 0 chr3 107963959 107964067 -51635716 - L1MA5 LINE L1 -4 6296 6164 7 1408 1128 90 0 0 chr3 107964132 107964277 -51635506 - B1_Mus1 SINE Alu -1 147 3 7 1408 603 264 0 0 chr3 107964277 107964398 -51635385 - B3 SINE B2 -14 202 82 7 1408 369 336 19 9 chr3 107964387 107964495 -51635288 - PB1D10 SINE Alu -8 109 1 7 1408 847 159 77 24 chr3 107964690 107964858 -51634925 + B2_Mm2 SINE B2 1 177 -18 7 1408 938 170 7 0 chr3 107964879 107965026 -51634757 + B1_Mur4 SINE Alu 3 150 0 7 1408 2032 182 73 14 chr3 107965042 107965465 -51634318 - Lx7 LINE L1 -591 7105 6658 7 1408 1543 195 118 104 chr3 107965457 107965827 -51633956 + Lx7 LINE L1 7179 7527 -169 7 1408 251 54 0 26 chr3 107965827 107965865 -51633918 + (TTATA)n Simple_repeat Simple_repeat 5 41 0 7 1408 1543 195 118 104 chr3 107965865 107966004 -51633779 + Lx7 LINE L1 7528 7695 -1 7 1408 538 196 31 0 chr3 107966037 107966134 -51633649 + PB1D10 SINE Alu 18 117 0 7 1408 813 294 50 29 chr3 107966137 107966417 -51633366 + B4 SINE B4 5 290 -2 7 1408 183 188 0 0 chr3 107966435 107966483 -51633300 + (CA)n Simple_repeat Simple_repeat 1 48 0 7 1408 438 53 0 0 chr3 107966482 107966539 -51633244 + (GA)n Simple_repeat Simple_repeat 2 58 0 8 1408 360 0 0 0 chr3 107966548 107966588 -51633195 + (GGAA)n Simple_repeat Simple_repeat 2 41 0 8 1408 375 23 0 0 chr3 107969226 107969270 -51630513 + (TC)n Simple_repeat Simple_repeat 1 44 0 8 1408 189 0 0 0 chr3 107969270 107969290 -51630493 + (CA)n Simple_repeat Simple_repeat 1 21 0 8 1408 771 69 0 0 chr3 107969290 107969392 -51630391 + (GA)n Simple_repeat Simple_repeat 1 102 0 8 1408 198 0 0 0 chr3 107969706 107969728 -51630055 + (G)n Simple_repeat Simple_repeat 1 22 0 8 1408 231 36 0 0 chr3 107970765 107970793 -51628990 + (CAGA)n Simple_repeat Simple_repeat 4 31 0 8 1408 221 234 0 21 chr3 107970978 107971026 -51628757 + C-rich Low_complexity Low_complexity 2 48 0 8 1408 180 325 49 12 chr3 107971438 107971519 -51628264 + L3b LINE CR1 178 261 -221 8 1408 266 325 65 32 chr3 107972509 107972633 -51627150 - MIRc SINE MIR -139 129 2 8 1408 254 50 25 0 chr3 107972659 107972699 -51627084 + (TTTTTG)n Simple_repeat Simple_repeat 6 46 0 8 1408 862 81 203 0 chr3 107972699 107972822 -51626961 - B1_Mus1 SINE Alu 0 148 1 8 1408 1170 190 24 5 chr3 107972920 107973132 -51626651 - B3 SINE B2 0 216 1 8 1408 257 125 0 0 chr3 107973132 107973180 -51626603 - L1MC4 LINE L1 -10 7985 7938 8 1408 291 28 0 0 chr3 107973236 107973272 -51626511 + (TTG)n Simple_repeat Simple_repeat 1 36 0 8 1408 1212 75 0 0 chr3 107973273 107973420 -51626363 - B1_Mm SINE Alu 0 147 1 8 1408 311 137 20 0 chr3 107973448 107973499 -51626284 - HAL1-3A_ME LINE L1 -828 2030 1979 8 1408 617 266 142 35 chr3 107973499 107973787 -51625996 - L1MC4 LINE L1 -124 7918 7600 8 1408 735 131 28 35 chr3 107973831 107973846 -51625937 - B1_Mur4 SINE Alu 0 150 139 8 1408 258 81 0 0 chr3 107973846 107973883 -51625900 + (TTTG)n Simple_repeat Simple_repeat 3 39 0 8 1408 735 131 28 35 chr3 107973883 107973926 -51625857 - B1_Mur4 SINE Alu -12 138 96 8 1408 324 0 0 0 chr3 107973926 107973962 -51625821 + (TC)n Simple_repeat Simple_repeat 2 37 0 8 1408 735 131 28 35 chr3 107973962 107974044 -51625739 - B1_Mur4 SINE Alu -55 95 11 8 1408 1585 254 77 41 chr3 107974065 107974718 -51625065 - L1MC4 LINE L1 -498 7544 6869 8 1408 378 0 0 0 chr3 107974740 107974782 -51625001 + (TC)n Simple_repeat Simple_repeat 2 43 0 8 1408 234 0 0 0 chr3 107974782 107974807 -51624976 + (TG)n Simple_repeat Simple_repeat 1 26 0 8 1408 949 252 66 8 chr3 107974920 107975176 -51624607 + B4A SINE B4 4 274 -18 8 1408 185 172 0 0 chr3 107975343 107975372 -51624411 - L2 LINE L2 -2912 507 479 8 1408 374 200 0 0 chr3 107975758 107975823 -51623960 - B1_Mur1 SINE Alu -11 138 74 8 1408 563 306 56 0 chr3 107975976 107976136 -51623647 + MLT1J2 LTR MaLR 6 174 -274 8 1408 377 249 155 66 chr3 107976980 107977161 -51622622 + B3A SINE B2 1 197 -1 8 1408 256 339 46 57 chr3 107978281 107978456 -51621327 + LTR85c LTR Gypsy? 443 615 -208 8 1408 384 267 8 72 chr3 107978663 107978788 -51620995 + MamRep1879 DNA hAT? 1 117 -99 8 1408 678 225 21 58 chr3 107979600 107979789 -51619994 - B3A SINE B2 -15 183 2 8 1408 427 267 39 17 chr3 107980089 107980278 -51619505 - B3A SINE B2 0 195 3 8 1408 1125 128 0 0 chr3 107980464 107980644 -51619139 + (GGA)n Simple_repeat Simple_repeat 1 180 0 8 1408 686 216 0 36 chr3 107980648 107980787 -51618996 - B1_Mur1 SINE Alu -13 136 3 8 1408 290 355 76 12 chr3 107980945 107981116 -51618667 - MER5A DNA MER1_type -1 188 7 8 1408 2198 118 82 45 chr3 107981134 107981185 -51618598 - ORR1B1 LTR MaLR 0 394 349 8 1408 1449 60 27 5 chr3 107981185 107981370 -51618413 - B2_Mm2 SINE B2 -6 189 1 8 1408 2198 118 82 45 chr3 107981370 107981698 -51618085 - ORR1B1 LTR MaLR -46 348 1 8 1408 231 208 82 14 chr3 107981701 107981774 -51618009 - MER5A1 DNA MER1_type -1 165 88 8 1408 1072 200 53 14 chr3 107981802 107982010 -51617773 - B3 SINE B2 0 216 1 8 1408 362 310 94 25 chr3 107982012 107982171 -51617612 - MIRc SINE MIR -90 178 9 8 1408 326 328 112 0 chr3 107982370 107982504 -51617279 - L3 LINE CR1 -398 4091 3943 8 1408 849 179 21 0 chr3 107982658 107982798 -51616985 - B3 SINE B2 -73 143 1 8 1408 555 344 101 31 chr3 107982936 107983156 -51616627 + Lx8 LINE L1 7092 7323 -150 8 1408 573 28 0 0 chr3 107983156 107983227 -51616556 + (CA)n Simple_repeat Simple_repeat 2 72 0 8 1408 555 344 101 31 chr3 107983227 107983363 -51616420 + Lx8 LINE L1 7324 7472 -1 8 1408 740 247 0 7 chr3 107983816 107983952 -51615831 + B1_Mur3 SINE Alu 3 138 -11 8 1408 348 34 17 33 chr3 107983952 107984012 -51615771 + (CAAA)n Simple_repeat Simple_repeat 2 60 0 8 1408 1239 48 0 20 chr3 107985142 107985292 -51614491 - B1_Mus1 SINE Alu 0 148 2 8 1408 1441 78 16 10 chr3 107985450 107985644 -51614139 + B2_Mm2 SINE B2 1 195 0 8 1408 608 165 152 42 chr3 107985654 107985819 -51613964 + B3A SINE B2 1 183 -15 8 1408 23 0 0 0 chr3 107985846 107985869 -51613914 + AT_rich Low_complexity Low_complexity 1 23 0 8 1408 329 191 32 0 chr3 107985901 107985964 -51613819 - ID SINE ID -159 65 1 8 1408 346 269 196 18 chr3 107986350 107986513 -51613270 + MER3 DNA MER1_type 1 192 -17 8 1408 510 257 58 39 chr3 107986522 107986676 -51613107 + MER5A1 DNA MER1_type 2 158 -8 8 1408 198 0 0 0 chr3 107986733 107986755 -51613028 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 8 1408 686 108 10 19 chr3 107986755 107986853 -51612930 - B1_Mus2 SINE Alu -9 138 40 8 1408 744 161 0 30 chr3 107986853 107986987 -51612796 + (TCTCTG)n Simple_repeat Simple_repeat 5 134 0 8 1408 290 217 0 62 chr3 107986987 107987051 -51612732 - B1_Mur4 SINE Alu -90 60 1 8 1408 180 179 0 0 chr3 107987150 107987189 -51612594 + (TAGA)n Simple_repeat Simple_repeat 3 41 0 8 1408 1117 66 36 0 chr3 107987394 107987531 -51612252 + B1_Mus1 SINE Alu 2 143 -5 8 1408 471 35 0 0 chr3 107987536 107987593 -51612190 + (GAAA)n Simple_repeat Simple_repeat 2 58 0 8 1408 885 259 146 30 chr3 107987614 107987984 -51611799 + MLT1F LTR MaLR 1 413 -135 8 1408 186 43 0 0 chr3 107988739 107988762 -51611021 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 8 1408 180 0 0 0 chr3 107988829 107988849 -51610934 + (A)n Simple_repeat Simple_repeat 1 20 0 8 1408 272 191 124 56 chr3 107988851 107988940 -51610843 + MamGypLTR1b LTR Gypsy 649 743 -39 8 1408 27 52 0 17 chr3 107989191 107989229 -51610554 + GC_rich Low_complexity Low_complexity 1 38 0 8 1408 203 0 0 36 chr3 107989229 107989257 -51610526 + (CGG)n Simple_repeat Simple_repeat 1 27 0 8 1408 27 52 0 17 chr3 107989257 107989277 -51610506 + GC_rich Low_complexity Low_complexity 1 20 0 8 1408 28 29 0 0 chr3 107989397 107989432 -51610351 + GC_rich Low_complexity Low_complexity 1 35 0 8 1408 226 179 33 82 chr3 107990856 107990917 -51608866 - MT-int LTR MaLR -431 667 610 8 1408 435 341 42 12 chr3 107994860 107995026 -51604757 - MER58B DNA MER1_type -1 340 170 8 1408 229 276 13 38 chr3 107995031 107995110 -51604673 - MLT1A1 LTR MaLR -29 379 303 8 1408 289 314 48 24 chr3 107995299 107995423 -51604360 - ORR1E LTR MaLR -221 138 12 8 1408 355 274 60 0 chr3 107995467 107995584 -51604199 - MER58B DNA MER1_type -212 129 6 8 1408 414 97 0 114 chr3 107995587 107995692 -51604091 - L1Md_F3 LINE L1 0 6584 6492 8 1408 243 0 0 0 chr3 107995892 107995919 -51603864 + (T)n Simple_repeat Simple_repeat 1 27 0 8 1408 363 244 21 43 chr3 107996185 107996279 -51603504 + 5S rRNA rRNA 1 92 -29 8 1408 672 13 0 0 chr3 107997216 107997293 -51602490 + (TCCCC)n Simple_repeat Simple_repeat 4 80 0 8 1408 1178 69 14 0 chr3 107997502 107997647 -51602136 + B1_Mus1 SINE Alu 2 148 0 8 1408 225 175 0 0 chr3 107998090 107998130 -51601653 + (TG)n Simple_repeat Simple_repeat 1 40 0 8 1408 205 74 0 0 chr3 107998734 107998761 -51601022 - MIRc SINE MIR -74 194 168 8 1408 185 222 65 22 chr3 108001670 108001716 -51598067 - MIR SINE MIR -72 136 89 1 1408 270 81 0 0 chr3 108001840 108001877 -51597906 + (CACCAT)n Simple_repeat Simple_repeat 4 40 0 2 1409 449 216 245 13 chr3 108004463 108004622 -51595161 + B3A SINE B2 3 198 0 3 1409 28 48 0 0 chr3 108005157 108005199 -51594584 + AT_rich Low_complexity Low_complexity 1 42 0 4 1409 253 336 65 9 chr3 108011622 108011730 -51588053 + MIR3 SINE MIR 64 177 -31 5 1409 256 138 31 0 chr3 108012711 108012776 -51587007 + (TGGA)n Simple_repeat Simple_repeat 4 70 0 6 1409 33 43 0 0 chr3 108013391 108013438 -51586345 + GC_rich Low_complexity Low_complexity 1 47 0 7 1409 492 18 0 0 chr3 108014332 108014389 -51585394 + (TTTC)n Simple_repeat Simple_repeat 4 60 0 8 1409 306 106 0 0 chr3 108017341 108017388 -51582395 + (GGA)n Simple_repeat Simple_repeat 1 47 0 9 1409 247 304 17 51 chr3 108017946 108018064 -51581719 + YREP_Mm Unknown Unknown 224 337 -1475 1 1409 188 34 0 33 chr3 108018098 108018128 -51581655 + (TAA)n Simple_repeat Simple_repeat 3 31 0 1 1409 284 333 61 12 chr3 108018138 108018220 -51581563 + PB1D7 SINE Alu 1 86 -34 1 1409 485 303 0 53 chr3 108018247 108018314 -51581469 + B1F1 SINE Alu 3 62 -87 1 1409 1088 83 139 23 chr3 108018314 108018487 -51581296 + B2_Mm2 SINE B2 1 193 -2 1 1409 485 303 0 53 chr3 108018487 108018569 -51581214 + B1F1 SINE Alu 63 144 -5 1 1409 333 232 78 28 chr3 108018582 108018724 -51581059 + L1ME2z LINE L1 6288 6436 -8 1 1409 1267 99 44 0 chr3 108018725 108018907 -51580876 + B2_Mm2 SINE B2 1 190 -5 1 1409 324 341 54 81 chr3 108018915 108019100 -51580683 + MamRep38 DNA hAT 83 262 -33 1 1409 566 291 59 21 chr3 108020160 108020346 -51579437 - MIR SINE MIR -49 213 21 1 1409 364 276 0 26 chr3 108020873 108020951 -51578832 - ID4 SINE ID -1 82 7 1 1409 257 240 29 29 chr3 108021517 108021620 -51578163 + IAPEz-int LTR ERVK 833 935 -5546 2 1409 679 197 17 0 chr3 108022470 108022587 -51577196 - PB1D9 SINE Alu 0 120 2 2 1409 1398 94 16 10 chr3 108023152 108023346 -51576437 - B2_Mm2 SINE B2 0 195 1 2 1409 450 303 150 7 chr3 108023548 108023701 -51576082 + MIR3 SINE MIR 19 193 -15 2 1409 517 347 10 5 chr3 108024508 108024702 -51575081 - MER3 DNA MER1_type -1 208 14 2 1409 241 333 24 12 chr3 108024750 108024832 -51574951 - MIR SINE MIR -102 106 24 2 1409 252 0 0 0 chr3 108024832 108024860 -51574923 + (TTCA)n Simple_repeat Simple_repeat 3 30 0 2 1409 195 325 108 31 chr3 108025797 108025927 -51573856 - MIRb SINE MIR -16 252 113 2 1409 307 291 21 75 chr3 108026037 108026130 -51573653 + RSINE1 SINE B4 1 88 -204 2 1409 702 144 48 6 chr3 108026196 108026364 -51573419 + CT-rich Low_complexity Low_complexity 3 177 0 2 1409 623 159 47 0 chr3 108026453 108026560 -51573223 + B1_Mur4 SINE Alu 35 146 -4 3 1409 591 74 0 0 chr3 108026566 108026647 -51573136 + (TAGA)n Simple_repeat Simple_repeat 4 84 0 3 1409 386 227 15 4 chr3 108026715 108026815 -51572968 - B1_Mur3 SINE Alu -43 104 2 3 1409 617 191 17 0 chr3 108027119 108027234 -51572549 - URR1B DNA MER1_type 0 225 109 3 1409 355 264 104 55 chr3 108028261 108028425 -51571358 - MIRm SINE MIR -96 180 9 3 1409 22 35 0 0 chr3 108029390 108029419 -51570364 + GC_rich Low_complexity Low_complexity 1 29 0 3 1409 738 271 43 10 chr3 108030617 108030826 -51568957 + B3 SINE B2 1 216 0 3 1409 777 135 94 36 chr3 108030934 108031072 -51568711 + B1_Mus1 SINE Alu 2 147 -1 3 1409 21 57 0 0 chr3 108031072 108031107 -51568676 + AT_rich Low_complexity Low_complexity 1 35 0 3 1409 279 0 0 0 chr3 108031525 108031556 -51568227 + (TG)n Simple_repeat Simple_repeat 2 32 0 3 1409 446 280 18 18 chr3 108031618 108031727 -51568056 + RSINE1 SINE B4 1 109 -56 4 1409 26 74 0 0 chr3 108031842 108031896 -51567887 + AT_rich Low_complexity Low_complexity 1 54 0 4 1409 633 250 33 7 chr3 108031905 108032058 -51567725 - RSINE1 SINE B4 -6 159 3 4 1409 1131 120 47 37 chr3 108032195 108032386 -51567397 + B2_Mm2 SINE B2 3 195 0 4 1409 415 106 0 0 chr3 108032670 108032736 -51567047 + L1_Mus2 LINE L1 6501 6566 0 4 1409 645 298 94 49 chr3 108032798 108033251 -51566532 - L1ME1 LINE L1 -218 5955 5478 4 1409 1374 77 16 5 chr3 108033251 108033435 -51566348 - B2_Mm2 SINE B2 -9 186 1 4 1409 645 300 91 56 chr3 108033435 108033507 -51566276 - L1ME1 LINE L1 -702 5477 5410 4 1409 585 246 0 17 chr3 108033509 108033629 -51566154 - PB1 SINE Alu -3 124 7 4 1409 377 302 0 54 chr3 108033827 108033939 -51565844 + PB1D10 SINE Alu 12 117 0 4 1409 233 220 0 20 chr3 108034223 108034274 -51565509 - RSINE1 SINE B4 -114 51 2 4 1409 34 0 0 0 chr3 108034359 108034393 -51565390 + AT_rich Low_complexity Low_complexity 1 34 0 5 1409 1269 28 0 0 chr3 108034393 108034534 -51565249 - B1_Mus1 SINE Alu -5 143 3 5 1409 287 219 47 0 chr3 108034729 108034796 -51564987 - PB1 SINE Alu -4 123 39 5 1409 304 371 76 0 chr3 108034923 108035055 -51564728 + MIR SINE MIR 96 237 -25 5 1409 237 261 47 133 chr3 108035863 108035991 -51563792 - PB1D10 SINE Alu 0 117 1 5 1409 592 256 7 74 chr3 108036249 108036397 -51563386 + RSINE1 SINE B4 28 165 0 5 1409 424 289 45 143 chr3 108036734 108037000 -51562783 - MLT1K LTR MaLR -39 556 317 5 1409 216 241 276 0 chr3 108037010 108037068 -51562715 - ID4_ SINE ID -8 75 2 5 1409 228 370 40 0 chr3 108037113 108037213 -51562570 + L2 LINE L2 2697 2800 -619 5 1409 207 200 15 30 chr3 108037221 108037288 -51562495 + (TTTA)n Simple_repeat Simple_repeat 4 69 0 5 1409 577 338 0 6 chr3 108037291 108037455 -51562328 - RSINE1 SINE B4 -2 163 1 6 1409 342 193 258 18 chr3 108037467 108037581 -51562202 - B1F1 SINE Alu -9 140 5 6 1409 722 237 83 31 chr3 108037734 108037926 -51561857 - B3 SINE B2 -13 203 2 6 1409 1909 125 69 61 chr3 108038469 108038498 -51561285 + ORR1B2 LTR MaLR 1 30 -348 6 1409 1245 61 0 0 chr3 108038498 108038646 -51561137 + B1_Mus1 SINE Alu 1 148 0 6 1409 2032 106 93 12 chr3 108038646 108038991 -51560792 + ORR1B2 LTR MaLR 13 378 0 6 1409 490 204 30 30 chr3 108039382 108039483 -51560300 + B1F SINE Alu 49 149 0 6 1409 263 331 65 38 chr3 108039545 108039730 -51560053 - L2b LINE L2 -236 3139 2950 6 1409 293 18 33 67 chr3 108039771 108039831 -51559952 + (TTTTG)n Simple_repeat Simple_repeat 5 62 0 6 1409 391 184 56 33 chr3 108039831 108039921 -51559862 + MTD LTR MaLR 13 104 -317 6 1409 672 168 84 0 chr3 108039925 108040056 -51559727 + MTD LTR MaLR 266 407 -12 6 1409 525 322 51 19 chr3 108040176 108040391 -51559392 + B4A SINE B4 3 224 -68 6 1409 540 0 0 0 chr3 108040404 108040464 -51559319 + (GA)n Simple_repeat Simple_repeat 2 61 0 7 1409 898 135 109 23 chr3 108040482 108040656 -51559127 + B2_Mm2 SINE B2 1 189 -6 7 1409 205 146 20 20 chr3 108040670 108040719 -51559064 + GA-rich Low_complexity Low_complexity 3 51 0 7 1409 591 173 199 24 chr3 108040746 108040912 -51558871 + B2_Mm2 SINE B2 1 195 0 7 1409 1486 28 55 6 chr3 108040917 108041099 -51558684 - B2_Mm1a SINE B2 -2 191 1 7 1409 441 261 405 47 chr3 108041208 108041457 -51558326 - MTEa LTR MaLR -40 339 2 7 1409 186 309 34 92 chr3 108041461 108041540 -51558243 - L2b LINE L2 -904 2515 2439 6 1409 628 256 31 155 chr3 108041540 108041766 -51558017 - B3A SINE B2 0 198 1 7 1409 186 309 34 92 chr3 108041766 108041893 -51557890 - L2b LINE L2 -981 2438 2321 6 1409 584 290 7 33 chr3 108041893 108042043 -51557740 - B1_Mur1 SINE Alu -3 146 1 7 1409 298 329 0 0 chr3 108041978 108042057 -51557726 - B4 SINE B4 -142 150 72 7 1409 779 199 7 14 chr3 108042059 108042202 -51557581 - B1_Mur1 SINE Alu -7 142 1 7 1409 640 286 60 18 chr3 108042913 108043115 -51556668 - B3A SINE B2 -2 196 8 8 1409 926 223 34 29 chr3 108043167 108043375 -51556408 + B3 SINE B2 2 210 -6 8 1409 1316 20 0 0 chr3 108043446 108043593 -51556190 + B1_Mus2 SINE Alu 1 147 0 8 1409 315 0 0 0 chr3 108043593 108043628 -51556155 + (A)n Simple_repeat Simple_repeat 1 35 0 8 1409 21 0 0 0 chr3 108044132 108044153 -51555630 + AT_rich Low_complexity Low_complexity 1 21 0 8 1409 898 221 132 0 chr3 108044564 108044867 -51554916 - L1M5 LINE L1 -2584 3562 3220 8 1409 3533 47 28 5 chr3 108044899 108045325 -51554458 - RLTR10C LTR ERVK 0 436 1 8 1409 7325 35 2 52 chr3 108045327 108046305 -51553478 - MMERVK10C-int LTR ERVK -2 7579 6651 8 1409 18673 40 0 0 chr3 108046296 108048582 -51551201 - MMERVK10C-int LTR ERVK -1771 5810 3525 8 1409 1841 51 0 0 chr3 108048562 108048798 -51550985 - RLTR10-int LTR ERVK -1100 887 652 8 1409 341 89 0 0 chr3 108048801 108048846 -51550937 - RLTR10-int LTR ERVK -6405 137 93 8 1409 256 141 22 66 chr3 108048846 108048937 -51550846 + CT-rich Low_complexity Low_complexity 3 89 0 8 1409 369 23 0 0 chr3 108049019 108049062 -51550721 - MMERVK10C-int LTR ERVK -7314 267 225 8 1409 256 222 0 0 chr3 108049062 108049107 -51550676 - RLTR27 LTR ERVK -34 275 231 9 1409 1448 50 0 0 chr3 108049107 108049287 -51550496 - MMERVK10C-int LTR ERVK -7401 180 1 8 1409 3489 54 28 0 chr3 108049287 108049711 -51550072 - RLTR10C LTR ERVK 0 436 1 8 1409 21 36 0 0 chr3 108049782 108049810 -51549973 + AT_rich Low_complexity Low_complexity 1 28 0 9 1409 680 226 24 36 chr3 108049813 108049978 -51549805 - RSINE1 SINE B4 0 165 3 9 1409 374 263 286 20 chr3 108050018 108050162 -51549621 + Lx8 LINE L1 7149 7333 -140 9 1409 1164 71 0 0 chr3 108050162 108050317 -51549466 + (GAA)n Simple_repeat Simple_repeat 2 156 0 9 1409 374 263 286 20 chr3 108050317 108050424 -51549359 + Lx8 LINE L1 7334 7466 -7 9 1409 422 346 62 70 chr3 108050488 108050715 -51549068 - LTR16B LTR ERVL -245 235 1 9 1409 348 24 0 0 chr3 108050871 108050912 -51548871 + (TC)n Simple_repeat Simple_repeat 2 42 0 9 1409 318 323 32 0 chr3 108050912 108051036 -51548747 - L1MD LINE L1 -2946 3200 3073 9 1409 862 140 88 0 chr3 108051068 108051204 -51548579 - B1_Mur4 SINE Alu -1 149 2 9 1409 279 371 20 20 chr3 108051950 108052096 -51547687 - ERVL-B4-int LTR ERVL -1324 4390 4245 9 1409 260 61 0 0 chr3 108052314 108052347 -51547436 - RLTRETN_Mm LTR ERVK 0 322 290 1 1409 1317 261 118 25 chr3 108052339 108052771 -51547012 - MLT2B4 LTR ERVL -84 472 1 1 1409 592 319 116 32 chr3 108052959 108053234 -51546549 - HERV16-int LTR ERVL -3573 1423 1127 1 1409 2475 92 6 0 chr3 108053234 108053559 -51546224 - ORR1A2 LTR MaLR 0 327 1 1 1409 592 319 116 32 chr3 108053559 108053750 -51546033 - HERV16-int LTR ERVL -3870 1126 918 1 1409 1760 171 81 55 chr3 108054216 108054637 -51545146 + Lx5 LINE L1 6614 7045 -5 1 1409 25 31 0 0 chr3 108054916 108054948 -51544835 + AT_rich Low_complexity Low_complexity 1 32 0 1 1409 3841 144 12 8 chr3 108055020 108055683 -51544100 - L1_Mur2 LINE L1 -704 5173 4508 1 1409 467 106 15 0 chr3 108055683 108055749 -51544034 - RLTR19 LTR ERVK 0 499 433 1 1409 337 233 139 0 chr3 108055745 108055831 -51543952 - MLT1B LTR MaLR -292 98 1 1 1409 2157 127 200 6 chr3 108056507 108057238 -51542545 + RMER19B LTR ERVK 3 875 -27 1 1409 517 256 253 25 chr3 108057224 108057503 -51542280 - MTA_Mm LTR MaLR -35 384 18 1 1409 594 240 8 0 chr3 108057508 108057629 -51542154 - RSINE1 SINE B4 -31 134 13 1 1409 258 246 0 16 chr3 108058020 108058082 -51541701 - B4A SINE B4 -44 248 188 1 1409 411 273 60 8 chr3 108058143 108058276 -51541507 + B1F SINE Alu 10 149 0 1 1409 684 173 87 0 chr3 108058422 108058549 -51541234 - B1_Mm SINE Alu -8 139 2 1 1409 329 43 21 0 chr3 108058580 108058627 -51541156 + (TG)n Simple_repeat Simple_repeat 1 48 0 1 1409 445 301 77 0 chr3 108058634 108058777 -51541006 - B3A SINE B2 -42 156 3 1 1409 416 191 211 20 chr3 108058786 108058997 -51540786 - L1MA9 LINE L1 -53 6238 5979 1 1409 246 289 0 0 chr3 108058998 108059050 -51540733 - ID4_ SINE ID -27 56 5 1 1409 1376 94 5 0 chr3 108059083 108059274 -51540509 - B2_Mm1t SINE B2 0 193 2 1 1409 21 36 0 0 chr3 108060261 108060289 -51539494 + GC_rich Low_complexity Low_complexity 1 28 0 1 1409 198 143 0 0 chr3 108061147 108061182 -51538601 + (CATA)n Simple_repeat Simple_repeat 2 36 0 1 1409 254 336 72 34 chr3 108061439 108061701 -51538082 - L2a LINE L2 -8 3418 3095 1 1409 613 253 19 19 chr3 108061935 108062096 -51537687 - B3 SINE B2 -42 174 14 1 1409 198 0 0 0 chr3 108062097 108062119 -51537664 + (TC)n Simple_repeat Simple_repeat 2 23 0 1 1409 285 277 133 8 chr3 108062146 108062266 -51537517 - B1F SINE Alu 0 149 15 1 1409 693 53 0 0 chr3 108062943 108063037 -51536746 + (TG)n Simple_repeat Simple_repeat 2 95 0 1 1409 324 0 0 0 chr3 108063303 108063339 -51536444 + (TC)n Simple_repeat Simple_repeat 1 36 0 1 1409 3564 52 14 2 chr3 108063358 108063804 -51535979 - L1Md_F3 LINE L1 0 6584 6134 1 1409 1004 47 117 0 chr3 108063846 108063974 -51535809 + B1_Mus2 SINE Alu 1 143 -4 1 1409 1122 116 79 21 chr3 108064848 108065038 -51534745 - Lx LINE L1 -156 6498 6316 1 1409 383 177 0 0 chr3 108065287 108065349 -51534434 + ID4_ SINE ID 4 65 -18 1 1409 361 99 14 27 chr3 108065432 108065505 -51534278 + (TTTC)n Simple_repeat Simple_repeat 3 74 0 1 1409 615 259 58 34 chr3 108065654 108065862 -51533921 - B3 SINE B2 -3 213 1 1 1409 501 275 29 0 chr3 108066178 108066349 -51533434 + MTEa LTR MaLR 96 271 -108 1 1409 1165 80 66 44 chr3 108066381 108066564 -51533219 + B2_Mm2 SINE B2 1 187 -8 1 1409 379 250 98 8 chr3 108066638 108066771 -51533012 + B3A SINE B2 54 198 0 1 1409 395 210 0 13 chr3 108068278 108068372 -51531411 - ID4_ SINE ID -52 100 8 1 1409 236 255 149 9 chr3 108069110 108069217 -51530566 - ORR1C2 LTR MaLR -1 383 262 1 1409 265 284 133 31 chr3 108070202 108070300 -51529483 - PB1D10 SINE Alu -8 109 2 1 1409 1139 61 7 0 chr3 108070371 108070518 -51529265 + B1_Mus1 SINE Alu 1 148 0 1 1409 279 196 126 22 chr3 108070534 108070624 -51529159 + PB1D10 SINE Alu 3 111 -9 1 1409 375 182 34 11 chr3 108071025 108071114 -51528669 + PB1D9 SINE Alu 28 118 -2 1 1409 29 84 0 0 chr3 108071446 108071517 -51528266 + AT_rich Low_complexity Low_complexity 1 71 0 1 1409 663 234 7 0 chr3 108072132 108072273 -51527510 - B1F2 SINE Alu -7 142 1 1 1409 349 279 239 29 chr3 108072575 108072612 -51527171 - Tigger1 DNA MER2_type -96 2322 2288 1 1409 1726 218 27 27 chr3 108072612 108072980 -51526803 - ORR1D2 LTR MaLR -2 368 1 1 1409 349 279 239 29 chr3 108072980 108073289 -51526494 - Tigger1 DNA MER2_type -131 2287 1903 1 1409 543 239 56 7 chr3 108073391 108073534 -51526249 - Tigger1 DNA MER2_type -1826 592 443 1 1409 627 245 112 6 chr3 108073796 108073966 -51525817 + B3A SINE B2 14 190 -5 1 1409 740 218 80 11 chr3 108073987 108074163 -51525620 + B4 SINE B4 86 273 -19 1 1409 284 314 71 28 chr3 108074278 108074419 -51525364 - Tigger1 DNA MER2_type -2245 173 27 1 1409 1653 204 81 11 chr3 108074462 108074844 -51524939 + MTD LTR MaLR 3 411 -8 1 1409 1157 28 28 0 chr3 108075591 108075733 -51524050 + B1_Mus1 SINE Alu 1 146 -2 1 1409 2154 75 74 6 chr3 108076163 108076474 -51523309 + L1_Mus1 LINE L1 6236 6567 0 1 1409 846 61 15 30 chr3 108076713 108076848 -51522935 + B2_Mm2 SINE B2 29 161 -34 1 1409 264 59 0 0 chr3 108076848 108076882 -51522901 + (TGAA)n Simple_repeat Simple_repeat 4 37 0 1 1409 670 168 99 20 chr3 108076882 108076898 -51522885 + B2_Mm1t SINE B2 176 191 -2 1 1409 228 237 36 134 chr3 108077902 108077951 -51521832 + PB1D9 SINE Alu 20 61 -59 1 1409 225 0 0 0 chr3 108077951 108077976 -51521807 + (CAGTC)n Simple_repeat Simple_repeat 1 25 0 1 1409 237 216 35 41 chr3 108077976 108078038 -51521745 + B1_Mur1 SINE Alu 62 149 0 1 1409 785 113 162 0 chr3 108078641 108078783 -51521000 - B2_Mm2 SINE B2 -30 165 1 1 1409 1228 104 33 0 chr3 108078814 108078997 -51520786 - B2_Mm1a SINE B2 -2 191 3 1 1409 1268 93 66 0 chr3 108079010 108079192 -51520591 - B2_Mm2 SINE B2 -1 194 1 1 1409 912 150 0 26 chr3 108079416 108079567 -51520216 - B1_Mus2 SINE Alu 0 147 1 1 1409 278 277 69 55 chr3 108079568 108079713 -51520070 - B1F1 SINE Alu 0 149 3 1 1409 818 249 108 30 chr3 108080741 108080885 -51518898 + B4 SINE B4 1 169 -123 1 1409 216 0 0 0 chr3 108080885 108080909 -51518874 + (CAGA)n Simple_repeat Simple_repeat 3 26 0 1 1409 818 249 108 30 chr3 108080909 108081033 -51518750 + B4 SINE B4 170 290 -2 1 1409 715 255 19 19 chr3 108081122 108081334 -51518449 + B3 SINE B2 5 216 0 1 1409 216 0 0 0 chr3 108081453 108081477 -51518306 + (TG)n Simple_repeat Simple_repeat 2 25 0 1 1409 306 0 0 0 chr3 108081480 108081514 -51518269 + (CA)n Simple_repeat Simple_repeat 2 35 0 1 1409 256 295 0 16 chr3 108081850 108081912 -51517871 + ID4_ SINE ID 4 64 -19 1 1409 418 331 28 7 chr3 108081981 108082124 -51517659 - RSINE1 SINE B4 -15 150 5 1 1409 1004 171 43 0 chr3 108082150 108082337 -51517446 + B2_Mm2 SINE B2 1 195 0 1 1409 24 0 0 0 chr3 108082871 108082895 -51516888 + AT_rich Low_complexity Low_complexity 1 24 0 1 1409 497 44 0 14 chr3 108083138 108083207 -51516576 + (TTGG)n Simple_repeat Simple_repeat 2 69 0 1 1409 778 141 94 0 chr3 108083207 108083335 -51516448 - B1_Mur4 SINE Alu -9 141 2 1 1409 204 40 0 0 chr3 108083506 108083531 -51516252 + (A)n Simple_repeat Simple_repeat 1 25 0 1 1409 890 196 24 0 chr3 108083746 108083914 -51515869 + B3 SINE B2 4 175 -41 1 1409 22 35 0 0 chr3 108083934 108083963 -51515820 + AT_rich Low_complexity Low_complexity 1 29 0 1 1409 1437 109 187 0 chr3 108084420 108084687 -51515096 - ORR1A2 LTR MaLR -8 319 3 1 1409 201 94 0 0 chr3 108084797 108084829 -51514954 + (TG)n Simple_repeat Simple_repeat 1 32 0 1 1409 708 221 76 0 chr3 108084845 108085003 -51514780 - B3 SINE B2 -46 170 1 1 1409 237 259 0 58 chr3 108085316 108085402 -51514381 + PB1D10 SINE Alu 37 117 0 1 1409 23 33 0 0 chr3 108086994 108087024 -51512759 + GC_rich Low_complexity Low_complexity 1 30 0 1 1409 21 0 0 0 chr3 108087165 108087186 -51512597 + GC_rich Low_complexity Low_complexity 1 21 0 1 1409 37 62 0 0 chr3 108087231 108087296 -51512487 + GC_rich Low_complexity Low_complexity 1 65 0 1 1409 25 90 0 0 chr3 108087362 108087429 -51512354 + GC_rich Low_complexity Low_complexity 1 67 0 1 1409 27 29 0 0 chr3 108087478 108087512 -51512271 + GC_rich Low_complexity Low_complexity 1 34 0 1 1409 288 0 0 0 chr3 108088923 108088955 -51510828 + (TC)n Simple_repeat Simple_repeat 2 33 0 1 1409 296 266 12 12 chr3 108089691 108089771 -51510012 - ID4 SINE ID -2 81 2 1 1409 234 0 0 0 chr3 108090145 108090171 -51509612 + (A)n Simple_repeat Simple_repeat 1 26 0 1 1409 209 293 48 39 chr3 108090278 108090381 -51509402 + MIRm SINE MIR 86 189 -87 1 1409 1028 52 74 0 chr3 108092345 108092480 -51507303 - B1_Mus1 SINE Alu -1 147 3 1 1409 195 284 22 43 chr3 108093560 108093652 -51506131 + MIRc SINE MIR 51 140 -128 1 1409 528 59 0 0 chr3 108093661 108093729 -51506054 + (TC)n Simple_repeat Simple_repeat 1 68 0 1 1409 250 113 0 68 chr3 108093729 108093791 -51505992 - B1_Mur4 SINE Alu 0 147 93 1 1409 257 349 64 64 chr3 108094138 108094294 -51505489 - RSINE1 SINE B4 -7 158 3 1 1409 566 193 101 0 chr3 108094868 108094977 -51504806 - PB1D9 SINE Alu 0 120 1 1 1409 624 164 0 0 chr3 108095322 108095456 -51504327 + CT-rich Low_complexity Low_complexity 1 134 0 1 1409 1105 89 0 20 chr3 108095456 108095605 -51504178 - B1_Mus1 SINE Alu -1 147 2 1 1409 23 0 0 0 chr3 108095629 108095652 -51504131 + AT_rich Low_complexity Low_complexity 1 23 0 1 1409 404 242 40 0 chr3 108095923 108096022 -51503761 + B4 SINE B4 2 104 -188 1 1409 255 246 15 15 chr3 108096051 108096117 -51503666 + B4A SINE B4 207 272 -20 1 1409 374 220 0 8 chr3 108096149 108096254 -51503529 + (CA)n Simple_repeat Simple_repeat 1 104 0 1 1409 212 54 0 51 chr3 108096254 108096293 -51503490 + (TCTCTG)n Simple_repeat Simple_repeat 3 39 0 2 1409 374 220 0 8 chr3 108096293 108096306 -51503477 + (CA)n Simple_repeat Simple_repeat 1 13 0 2 1409 253 292 77 34 chr3 108096421 108096538 -51503245 + MER2 DNA MER2_type 177 298 -47 2 1409 234 0 0 0 chr3 108096668 108096694 -51503089 + (CCTG)n Simple_repeat Simple_repeat 2 27 0 2 1409 773 191 0 0 chr3 108096694 108096825 -51502958 - B1_Mur4 SINE Alu -10 140 10 2 1409 353 302 34 17 chr3 108097760 108097878 -51501905 + MIRb SINE MIR 38 157 -111 2 1409 542 250 139 59 chr3 108097897 108098084 -51501699 + ID_B1 SINE B4 17 218 -6 2 1409 285 217 135 30 chr3 108098345 108098478 -51501305 - L2b LINE L2 -267 3108 2962 2 1409 222 116 0 0 chr3 108098632 108098675 -51501108 + (A)n Simple_repeat Simple_repeat 1 43 0 2 1409 236 255 113 11 chr3 108099537 108099640 -51500143 - MIR3 SINE MIR -153 115 3 2 1409 723 281 42 82 chr3 108100239 108100308 -51499475 + MER2 DNA MER2_type 3 66 -279 2 1409 1211 35 7 0 chr3 108100308 108100453 -51499330 + B1_Mus2 SINE Alu 1 146 -1 2 1409 723 281 42 82 chr3 108100453 108100736 -51499047 + MER2 DNA MER2_type 67 341 -4 2 1409 387 211 55 11 chr3 108102740 108102831 -51496952 - PB1D10 SINE Alu -12 105 11 2 1409 198 103 0 0 chr3 108103019 108103048 -51496735 + (TC)n Simple_repeat Simple_repeat 2 30 0 2 1409 234 91 0 0 chr3 108103072 108103105 -51496678 + (CA)n Simple_repeat Simple_repeat 2 34 0 2 1409 28 0 0 0 chr3 108103105 108103133 -51496650 + AT_rich Low_complexity Low_complexity 1 28 0 2 1409 802 284 80 12 chr3 108103409 108103733 -51496050 - MTEa LTR MaLR -1 378 33 2 1409 203 57 0 79 chr3 108103965 108103981 -51495802 + (T)n Simple_repeat Simple_repeat 1 14 0 2 1409 1246 48 0 0 chr3 108103981 108104128 -51495655 - B1_Mus1 SINE Alu -1 147 1 2 1409 203 57 0 79 chr3 108104128 108104149 -51495634 + (T)n Simple_repeat Simple_repeat 1 21 0 2 1409 1369 83 38 19 chr3 108104151 108104360 -51495423 - L1_Mus3 LINE L1 -1 6637 6425 2 1409 436 250 29 0 chr3 108104559 108104663 -51495120 + PB1D10 SINE Alu 1 107 -10 2 1409 281 285 25 38 chr3 108104782 108104939 -51494844 - L1MEc LINE L1 -4911 1489 1335 2 1409 572 146 0 30 chr3 108104946 108105045 -51494738 - PB1D9 SINE Alu -1 119 24 2 1409 186 43 0 0 chr3 108105069 108105092 -51494691 + (TCCC)n Simple_repeat Simple_repeat 4 26 0 2 1409 385 295 9 0 chr3 108105319 108105431 -51494352 - PB1D10 SINE Alu 0 117 5 2 1409 342 284 0 19 chr3 108105340 108105444 -51494339 - ID_B1 SINE B4 -48 176 75 2 1409 341 196 188 112 chr3 108105495 108105650 -51494133 - L1MEc LINE L1 -5410 990 800 2 1409 1424 81 0 16 chr3 108105650 108105679 -51494104 - B2_Mm2 SINE B2 -9 186 159 2 1409 324 0 0 0 chr3 108105679 108105715 -51494068 + (TTTA)n Simple_repeat Simple_repeat 3 38 0 2 1409 1424 81 0 16 chr3 108105715 108105874 -51493909 - B2_Mm2 SINE B2 -37 158 1 2 1409 788 217 41 41 chr3 108105879 108105899 -51493884 - B3A SINE B2 0 198 182 2 1409 297 0 0 0 chr3 108105899 108105932 -51493851 + (TCTG)n Simple_repeat Simple_repeat 4 36 0 2 1409 788 217 41 41 chr3 108105932 108105953 -51493830 - B3A SINE B2 -17 181 157 2 1409 204 40 0 0 chr3 108105953 108105978 -51493805 + (GA)n Simple_repeat Simple_repeat 1 25 0 2 1409 188 0 74 0 chr3 108105981 108106008 -51493775 + (TGAA)n Simple_repeat Simple_repeat 2 30 0 2 1409 788 217 41 41 chr3 108106008 108106158 -51493625 - B3A SINE B2 -42 156 5 2 1409 341 196 188 112 chr3 108106158 108106220 -51493563 - L1MEc LINE L1 -5601 799 750 2 1409 370 292 34 14 chr3 108106248 108106394 -51493389 - RSINE1 SINE B4 -16 149 1 2 1409 278 286 19 24 chr3 108106633 108106760 -51493023 - MLT1A1 LTR MaLR -2 465 307 2 1409 382 305 158 45 chr3 108106901 108107237 -51492546 - L1MEc LINE L1 -5995 405 32 2 1409 625 218 42 7 chr3 108107362 108107505 -51492278 + B1_Mur1 SINE Alu 2 149 0 2 1409 293 191 62 19 chr3 108107698 108107858 -51491925 + (CATATA)n Simple_repeat Simple_repeat 3 169 0 2 1409 754 292 129 59 chr3 108108040 108108429 -51491354 - MTD LTR MaLR -3 376 3 2 1409 308 308 17 0 chr3 108109966 108110086 -51489697 + HAL1b LINE L1 1888 2009 0 2 1409 324 228 139 47 chr3 108110087 108110216 -51489567 + ID_B1 SINE B4 78 218 -6 2 1409 670 119 127 0 chr3 108110101 108110219 -51489564 + B1_Mur3 SINE Alu 14 146 -3 2 1409 366 23 0 0 chr3 108110219 108110262 -51489521 + (GAAAA)n Simple_repeat Simple_repeat 2 44 0 2 1409 219 69 0 0 chr3 108110267 108110296 -51489487 + (GA)n Simple_repeat Simple_repeat 2 30 0 2 1409 534 326 41 24 chr3 108110915 108111207 -51488576 - Lx9 LINE L1 -267 7377 7081 2 1409 714 281 24 91 chr3 108111818 108111858 -51487925 + B4A SINE B4 56 81 -211 2 1409 501 233 111 74 chr3 108111858 108112048 -51487735 + B3A SINE B2 2 198 0 2 1409 714 281 24 91 chr3 108112048 108112261 -51487522 + B4A SINE B4 82 292 0 2 1409 496 224 70 65 chr3 108112463 108112626 -51487157 - ID_B1 SINE B4 -69 223 70 2 1409 1148 95 0 0 chr3 108114422 108114570 -51485213 + B1_Mus1 SINE Alu 1 148 0 2 1409 180 316 70 0 chr3 108114824 108114881 -51484902 + MIRb SINE MIR 46 106 -162 2 1409 2408 154 67 54 chr3 108114881 108115220 -51484563 + RLTR11A2 LTR ERVK 1 350 -177 2 1409 2474 84 12 6 chr3 108115220 108115545 -51484238 - ORR1A2 LTR MaLR 0 327 1 2 1409 2408 154 67 54 chr3 108115545 108115725 -51484058 + RLTR11A2 LTR ERVK 351 527 0 2 1409 1760 112 116 32 chr3 108115748 108116126 -51483657 + RMER17C LTR ERVK 1 410 0 2 1409 209 186 227 23 chr3 108116529 108116617 -51483166 - L3b LINE CR1 -248 234 129 2 1409 278 228 168 0 chr3 108117546 108117647 -51482136 - Lx8 LINE L1 -2 7471 7354 2 1409 268 70 13 78 chr3 108117650 108117727 -51482056 + A-rich Low_complexity Low_complexity 2 73 0 2 1409 767 271 72 5 chr3 108117752 108117960 -51481823 - Lx8 LINE L1 -181 7292 7071 2 1409 2180 295 133 45 chr3 108117968 108118036 -51481747 + Lx8 LINE L1 5654 5721 -1752 2 1409 450 53 0 0 chr3 108118036 108118093 -51481690 + (TGGA)n Simple_repeat Simple_repeat 1 57 0 2 1409 2180 295 133 45 chr3 108118093 108118432 -51481351 + Lx8 LINE L1 5722 6101 -1372 2 1409 1222 56 0 0 chr3 108118432 108118576 -51481207 + B1_Mm SINE Alu 4 147 0 2 1409 2180 295 133 45 chr3 108118576 108118766 -51481017 + Lx8 LINE L1 6102 6368 -1105 2 1409 1308 74 0 33 chr3 108118766 108118948 -51480835 - B2_Mm2 SINE B2 -18 177 2 2 1409 2180 295 133 45 chr3 108118948 108119339 -51480444 + Lx8 LINE L1 6369 6758 -715 2 1409 2095 108 6 77 chr3 108119339 108119391 -51480392 - ORR1A4 LTR MaLR 0 329 288 2 1409 1307 117 11 0 chr3 108119391 108119579 -51480204 - B2_Mm1t SINE B2 -3 190 1 2 1409 2095 108 6 77 chr3 108119579 108119592 -51480191 - ORR1A4 LTR MaLR -42 287 287 2 1409 1294 94 15 35 chr3 108119592 108119791 -51479992 - B2_Mm2 SINE B2 0 195 1 2 1409 2095 108 6 77 chr3 108119791 108120076 -51479707 - ORR1A4 LTR MaLR -42 287 3 2 1409 2180 295 133 45 chr3 108120076 108120320 -51479463 + Lx8 LINE L1 6759 6997 -476 2 1409 303 221 45 14 chr3 108120376 108120465 -51479318 + PB1D10 SINE Alu 24 119 -1 2 1409 24 53 0 0 chr3 108120700 108120738 -51479045 + AT_rich Low_complexity Low_complexity 1 38 0 2 1409 2243 108 2 115 chr3 108120799 108121049 -51478734 - RMER17C LTR ERVK 0 410 187 2 1409 555 56 0 0 chr3 108121049 108121120 -51478663 + (GGA)n Simple_repeat Simple_repeat 2 72 0 2 1409 2243 108 2 115 chr3 108121120 108121331 -51478452 - RMER17C LTR ERVK -224 186 2 2 1409 697 212 7 14 chr3 108121510 108121658 -51478125 + B1_Mur1 SINE Alu 3 149 0 2 1409 1435 282 75 0 chr3 108121684 108122084 -51477699 + MER82 DNA MER2_type 54 483 -170 2 1409 207 0 0 0 chr3 108122234 108122257 -51477526 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 2 1409 438 298 44 0 chr3 108122258 108122372 -51477411 + MER82 DNA MER2_type 534 652 -1 2 1409 877 314 96 66 chr3 108122499 108123184 -51476599 + MLT-int LTR MaLR 67 774 -597 2 1409 241 267 167 0 chr3 108123207 108123297 -51476486 + MLT-int LTR MaLR 676 780 -955 2 1409 286 265 144 19 chr3 108123351 108123455 -51476328 + MLT-int LTR MaLR 1483 1599 -136 2 1409 674 203 94 0 chr3 108123530 108123658 -51476125 - B1_Mur1 SINE Alu -8 141 2 2 1409 469 213 26 53 chr3 108123672 108123786 -51475997 + MTE2a LTR MaLR 52 162 -217 2 1409 482 298 17 97 chr3 108123787 108123939 -51475844 + MLT1A0 LTR MaLR 75 211 -154 2 1409 375 246 50 76 chr3 108123939 108124058 -51475725 + PB1D10 SINE Alu 1 116 -1 2 1409 482 298 17 97 chr3 108124058 108124143 -51475640 + MLT1A0 LTR MaLR 212 293 -72 2 1409 260 287 30 69 chr3 108124823 108124954 -51474829 + RMER12 LTR ERVK 714 839 -483 2 1409 425 204 7 21 chr3 108125468 108125608 -51474175 + CT-rich Low_complexity Low_complexity 3 140 0 2 1409 703 262 56 5 chr3 108125620 108125642 -51474141 - Lx8 LINE L1 -98 7375 7352 2 1409 1366 86 21 0 chr3 108125642 108125829 -51473954 - B2_Mm1t SINE B2 -1 192 2 2 1409 703 262 56 5 chr3 108125829 108126021 -51473762 - Lx8 LINE L1 -122 7351 7151 2 1409 556 240 141 11 chr3 108126055 108126232 -51473551 - Lx8 LINE L1 -433 7040 6841 2 1409 1102 49 20 40 chr3 108126232 108126382 -51473401 + B1_Mus1 SINE Alu 2 148 0 2 1409 198 0 51 51 chr3 108126382 108126421 -51473362 + (CAAAAA)n Simple_repeat Simple_repeat 3 41 0 2 1409 231 143 0 0 chr3 108126421 108126456 -51473327 - Lx8 LINE L1 -616 6857 6823 2 1409 23 0 0 0 chr3 108126481 108126504 -51473279 + AT_rich Low_complexity Low_complexity 1 23 0 2 1409 242 281 27 135 chr3 108126840 108126951 -51472832 - MLT1K LTR MaLR -18 577 479 2 1409 345 309 187 6 chr3 108127054 108127236 -51472547 - MER20 DNA MER1_type -2 217 3 2 1409 1045 211 102 83 chr3 108127702 108128074 -51471709 + MTE2a LTR MaLR 1 379 0 2 1409 23 0 0 0 chr3 108128331 108128354 -51471429 + AT_rich Low_complexity Low_complexity 1 23 0 2 1409 255 191 0 0 chr3 108128441 108128504 -51471279 + (CA)n Simple_repeat Simple_repeat 1 63 0 2 1409 1717 26 0 0 chr3 108129000 108129192 -51470591 - B2_Mm1a SINE B2 0 193 2 2 1409 226 296 179 38 chr3 108129301 108129536 -51470247 + L2 LINE L2 1947 2214 -1205 2 1409 243 79 0 0 chr3 108129810 108129848 -51469935 + (GA)n Simple_repeat Simple_repeat 2 39 0 2 1409 470 271 4 0 chr3 108130562 108130798 -51468985 + (TG)n Simple_repeat Simple_repeat 1 237 0 2 1409 187 289 0 165 chr3 108131072 108131163 -51468620 - L2c LINE L2 -27 3360 3285 2 1409 327 268 145 54 chr3 108131670 108131836 -51467947 + Tigger15a DNA TcMar 206 386 -329 2 1409 235 298 130 57 chr3 108131857 108132049 -51467734 + Tigger15a DNA TcMar 451 656 -59 2 1409 507 33 0 0 chr3 108132191 108132252 -51467531 + (TTTCC)n Simple_repeat Simple_repeat 1 61 0 2 1409 703 140 8 8 chr3 108132254 108132384 -51467399 + CT-rich Low_complexity Low_complexity 3 132 0 2 1409 263 222 0 0 chr3 108132384 108132429 -51467354 + polypyrimidine Low_complexity Low_complexity 4 48 0 2 1409 1044 122 7 0 chr3 108132430 108132578 -51467205 - B1_Mur3 SINE Alu 0 149 1 2 1409 596 259 122 0 chr3 108132601 108132790 -51466993 - B3 SINE B2 -3 213 2 2 1409 542 276 68 73 chr3 108133310 108133529 -51466254 - MER20 DNA MER1_type -1 218 1 2 1409 183 80 0 0 chr3 108133543 108133568 -51466215 + (CAAAAA)n Simple_repeat Simple_repeat 3 27 0 2 176 4639 120 42 20 chr3 108133914 108134728 -51465055 - RMER17B LTR ERVK 0 906 1 3 1410 825 295 50 74 chr3 108135118 108135481 -51464302 - ORR1E LTR MaLR -5 354 1 3 1410 3456 292 111 40 chr3 108135481 108136878 -51462905 - ORR1E-int LTR MaLR -53 1527 1 3 1410 300 222 0 60 chr3 108136906 108136973 -51462810 - ORR1E LTR MaLR 0 378 316 3 1410 214 291 220 8 chr3 108137054 108137172 -51462611 - L2a LINE L2 -4 3422 3280 3 1410 207 69 0 0 chr3 108137731 108137760 -51462023 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 3 1410 478 265 103 52 chr3 108137764 108137919 -51461864 - RSINE1 SINE B4 0 165 3 3 1410 2342 121 13 39 chr3 108138237 108138625 -51461158 - ORR1C1 LTR MaLR 0 378 1 3 1410 840 269 26 52 chr3 108138983 108139328 -51460455 - RLTR15 LTR ERVK -16 343 8 3 1410 981 311 156 32 chr3 108139331 108140048 -51459735 - L2a LINE L2 -649 2770 1965 3 1410 406 266 35 35 chr3 108141130 108141243 -51458540 - PB1D7 SINE Alu -3 117 5 3 1410 429 278 122 30 chr3 108141245 108141442 -51458341 + MER5C DNA MER1_type 98 312 -1 3 1410 287 370 77 46 chr3 108142348 108142769 -51457014 + L2a LINE L2 2889 3320 -106 3 1410 246 174 0 0 chr3 108143370 108143416 -51456367 + (TGGA)n Simple_repeat Simple_repeat 4 49 0 3 1410 339 285 123 0 chr3 108144660 108144790 -51454993 - B1_Mur1 SINE Alu -3 146 1 3 1410 1836 297 49 82 chr3 108144863 108145456 -51454327 - L1MA9 LINE L1 0 6312 5750 3 1410 937 127 190 16 chr3 108145456 108145640 -51454143 + B3 SINE B2 1 216 0 3 1410 1836 297 49 82 chr3 108145640 108146103 -51453680 - L1MA9 LINE L1 -563 5749 5291 3 1410 736 322 114 6 chr3 108146182 108146648 -51453135 - L1MA9 LINE L1 -976 5167 4652 3 1410 777 210 74 54 chr3 108146648 108146917 -51452866 - L1MA9 LINE L1 -2191 3955 3685 3 1410 237 258 152 20 chr3 108146945 108147044 -51452739 + PB1D10 SINE Alu 5 116 -1 3 1410 288 349 0 9 chr3 108147055 108147162 -51452621 + BC1_Mm scRNA scRNA 2 107 -45 3 1410 825 245 118 93 chr3 108147182 108147623 -51452160 + L1MB2 LINE L1 5708 6159 -12 3 1410 324 70 0 0 chr3 108147953 108147996 -51451787 + (CA)n Simple_repeat Simple_repeat 1 43 0 3 1410 734 259 58 23 chr3 108148031 108148394 -51451389 - MTD LTR MaLR -14 405 26 3 1410 465 263 0 0 chr3 108149041 108149136 -51450647 + RSINE1 SINE B4 3 97 -68 3 1410 397 268 151 11 chr3 108149917 108150102 -51449681 - MER33 DNA MER1_type -1 323 113 3 1410 520 202 280 0 chr3 108151958 108152126 -51447657 + ID_B1 SINE B4 2 216 -8 3 1410 297 274 0 0 chr3 108153584 108153646 -51446137 + ID4 SINE ID 9 70 -13 3 1410 204 125 0 0 chr3 108153657 108153689 -51446094 + (GGGA)n Simple_repeat Simple_repeat 1 32 0 3 1410 990 253 51 51 chr3 108153931 108154206 -51445577 + B4A SINE B4 1 275 -17 3 1410 280 316 53 0 chr3 108154323 108154418 -51445365 - ORR1E LTR MaLR -248 111 12 3 1410 388 329 14 27 chr3 108155243 108155256 -51444527 + ID_B1 SINE B4 78 218 -2 3 1410 467 308 23 0 chr3 108155256 108155386 -51444397 + B1F2 SINE Alu 11 143 -6 3 1410 378 301 23 78 chr3 108155417 108155573 -51444210 - MER72B LTR ERV1 -242 526 229 3 1410 915 159 0 20 chr3 108155623 108155771 -51444012 + B1_Mur2 SINE Alu 5 149 0 3 1410 312 140 31 31 chr3 108156145 108156241 -51443542 + (TATG)n Simple_repeat Simple_repeat 3 98 0 3 1410 205 98 0 47 chr3 108156322 108156365 -51443418 + (TATG)n Simple_repeat Simple_repeat 1 41 0 3 1410 232 135 38 19 chr3 108156398 108156451 -51443332 + (TG)n Simple_repeat Simple_repeat 1 54 0 3 1410 281 129 53 21 chr3 108156563 108156658 -51443125 + (TG)n Simple_repeat Simple_repeat 1 98 0 3 1410 349 203 0 28 chr3 108157477 108157548 -51442235 + BC1_Mm scRNA scRNA 2 70 -82 3 1410 812 236 115 0 chr3 108157488 108157679 -51442104 + ID_B1 SINE B4 12 224 0 3 1410 388 234 118 103 chr3 108157681 108157876 -51441907 + B3A SINE B2 1 198 0 3 1410 969 217 15 20 chr3 108158732 108158934 -51440849 - RMER30 DNA MER1_type 0 202 2 3 1410 593 154 73 57 chr3 108159668 108159792 -51439991 - B1_Mur3 SINE Alu -1 148 23 3 1410 583 239 154 104 chr3 108159834 108160016 -51439767 + B3 SINE B2 5 195 0 3 1410 183 205 0 0 chr3 108161708 108161747 -51438036 + GA-rich Low_complexity Low_complexity 2 40 0 3 1410 221 217 0 62 chr3 108163800 108163864 -51435919 + (TATATG)n Simple_repeat Simple_repeat 6 65 0 3 1410 381 70 0 0 chr3 108164666 108164723 -51435060 + (TCCC)n Simple_repeat Simple_repeat 2 58 0 3 1410 382 279 0 0 chr3 108165131 108165210 -51434573 - B1F SINE Alu -36 113 35 3 1410 28 0 0 0 chr3 108165325 108165353 -51434430 + GC_rich Low_complexity Low_complexity 1 28 0 3 1410 291 281 70 33 chr3 108165477 108165613 -51434170 + B4A SINE B4 100 241 -51 3 1410 1757 141 47 92 chr3 108165614 108165973 -51433810 + Lx4B LINE L1 6700 7042 -16 3 1410 303 28 0 0 chr3 108165973 108166009 -51433774 + (TGAA)n Simple_repeat Simple_repeat 1 36 0 3 1410 1220 61 0 0 chr3 108166022 108166169 -51433614 + B1_Mus2 SINE Alu 1 147 0 3 1410 710 244 0 0 chr3 108166201 108166336 -51433447 + RSINE1 SINE B4 2 136 -29 3 1410 455 269 135 4 chr3 108166335 108166471 -51433312 + B3 SINE B2 46 195 -3 3 1410 459 204 106 0 chr3 108166841 108166954 -51432829 - MIRb SINE MIR -8 260 136 3 1410 321 133 0 118 chr3 108166984 108167052 -51432731 + tRNA-Ala-GCY_ tRNA tRNA 4 63 -12 3 1410 289 102 34 0 chr3 108167072 108167131 -51432652 + (CA)n Simple_repeat Simple_repeat 2 62 0 3 1410 242 143 20 0 chr3 108167152 108167201 -51432582 + (CA)n Simple_repeat Simple_repeat 2 51 0 3 1410 277 318 51 8 chr3 108168944 108169099 -51430684 + MIR SINE MIR 21 188 -80 3 1410 222 37 0 0 chr3 108169236 108169263 -51430520 + (T)n Simple_repeat Simple_repeat 1 27 0 3 1410 1277 27 0 0 chr3 108169263 108169409 -51430374 - B1_Mus2 SINE Alu 0 147 2 3 1410 205 353 99 11 chr3 108169828 108169974 -51429809 + MIR3 SINE MIR 37 186 -22 3 1410 222 390 165 8 chr3 108170597 108170858 -51428925 - L2a LINE L2 -1 3425 3124 3 1410 183 296 28 14 chr3 108171042 108171114 -51428669 - L2a LINE L2 -541 2878 2806 3 1410 189 0 0 0 chr3 108171121 108171142 -51428641 + (TGGGGG)n Simple_repeat Simple_repeat 3 23 0 3 1410 256 192 0 0 chr3 108171250 108171302 -51428481 + PB1D9 SINE Alu 12 63 -57 3 1410 580 235 9 9 chr3 108171304 108171420 -51428363 + PB1D9 SINE Alu 2 117 -3 3 1410 309 317 40 126 chr3 108171663 108172013 -51427770 - L2a LINE L2 -2108 1311 992 3 1410 344 309 102 83 chr3 108172501 108172875 -51426908 + RMER10A LTR ERVL 12 392 -50 3 1410 648 121 56 16 chr3 108173435 108173692 -51426091 + (TCTCTG)n Simple_repeat Simple_repeat 1 267 0 3 1410 380 71 18 0 chr3 108174835 108174891 -51424892 + (CCCCCT)n Simple_repeat Simple_repeat 5 61 0 3 1410 477 0 0 0 chr3 108176980 108177033 -51422750 + (TC)n Simple_repeat Simple_repeat 1 53 0 3 1410 537 197 94 0 chr3 108179264 108179381 -51420402 + RSINE1 SINE B4 3 130 -35 3 1410 644 220 41 41 chr3 108179439 108179586 -51420197 + B1_Mur2 SINE Alu 1 147 -2 3 1410 1221 125 11 0 chr3 108179618 108179794 -51419989 + B2_Mm1t SINE B2 2 179 -14 3 1410 431 167 226 71 chr3 108179794 108179962 -51419821 + B2_Mm2 SINE B2 2 195 0 3 1410 1090 238 84 95 chr3 108180495 108180875 -51418908 - MTEa LTR MaLR -3 376 1 3 1410 710 207 72 22 chr3 108181760 108181898 -51417885 - B1_Mur4 SINE Alu -1 149 5 3 1410 22 0 0 0 chr3 108182206 108182228 -51417555 + AT_rich Low_complexity Low_complexity 1 22 0 3 1410 909 266 5 9 chr3 108183160 108183376 -51416407 - ID_B1 SINE B4 -8 216 2 3 1410 504 217 178 0 chr3 108183779 108183908 -51415875 + B3 SINE B2 59 210 -6 3 1410 603 147 0 0 chr3 108183913 108184015 -51415768 + (TA)n Simple_repeat Simple_repeat 1 102 0 3 1410 297 325 76 34 chr3 108184016 108184044 -51415739 - ID_B1 SINE B4 -4 220 186 3 1410 900 98 0 63 chr3 108184044 108184186 -51415597 + B1_Mur4 SINE Alu 5 137 -13 3 1410 297 325 76 34 chr3 108184186 108184275 -51415508 - ID_B1 SINE B4 -39 185 98 3 1410 318 224 38 50 chr3 108184215 108184295 -51415488 - PB1D10 SINE Alu -70 79 1 3 1410 198 103 0 0 chr3 108184669 108184698 -51415085 + (TGGGGG)n Simple_repeat Simple_repeat 1 29 0 3 1410 329 370 62 0 chr3 108185047 108185193 -51414590 + MER105 DNA DNA 5 159 -45 3 1410 712 195 6 39 chr3 108185724 108185877 -51413906 + ID_B1 SINE B4 93 249 -43 3 1410 234 0 0 0 chr3 108185882 108185908 -51413875 + (TG)n Simple_repeat Simple_repeat 2 27 0 3 1410 279 269 170 14 chr3 108187546 108187693 -51412090 - RMER17C LTR ERVK -56 354 185 3 1410 222 266 31 15 chr3 108187681 108187746 -51412037 + PB1D7 SINE Alu 49 114 -6 3 1410 350 251 277 34 chr3 108188460 108188637 -51411146 + ID_B1 SINE B4 2 221 -3 3 1410 312 27 0 0 chr3 108188638 108188675 -51411108 + (TAA)n Simple_repeat Simple_repeat 3 39 0 3 1410 441 312 0 77 chr3 108188675 108188845 -51410938 + RSINE1 SINE B4 5 161 -4 3 1410 1048 99 0 21 chr3 108188886 108189031 -51410752 + B1_Mus1 SINE Alu 1 142 -6 3 1410 231 103 0 0 chr3 108189040 108189079 -51410704 + (GGAA)n Simple_repeat Simple_repeat 4 42 0 3 1410 226 361 0 0 chr3 108189678 108189739 -51410044 + B4A SINE B4 85 145 -147 3 1410 393 278 27 27 chr3 108189685 108189796 -51409987 + PB1D10 SINE Alu 7 117 0 3 1410 1064 109 7 7 chr3 108189805 108189952 -51409831 + B1_Mus1 SINE Alu 1 147 -1 3 1410 25 51 0 0 chr3 108191055 108191094 -51408689 + AT_rich Low_complexity Low_complexity 1 39 0 3 1410 535 352 11 16 chr3 108192608 108192790 -51406993 - MIR SINE MIR -6 256 76 3 1410 180 0 0 0 chr3 108192907 108192927 -51406856 + (CAGA)n Simple_repeat Simple_repeat 4 23 0 3 1410 953 127 42 0 chr3 108192935 108193077 -51406706 + B1_Mus1 SINE Alu 1 148 0 3 1410 504 117 0 0 chr3 108193077 108193154 -51406629 + (A)n Simple_repeat Simple_repeat 1 77 0 3 1410 430 327 0 11 chr3 108193259 108193487 -51406296 + CT-rich Low_complexity Low_complexity 1 225 0 3 1410 201 39 0 0 chr3 108193833 108193859 -51405924 + (CAAAAA)n Simple_repeat Simple_repeat 4 29 0 3 1410 189 0 0 0 chr3 108194331 108194352 -51405431 + (CA)n Simple_repeat Simple_repeat 2 22 0 4 1410 22 0 0 0 chr3 108194364 108194386 -51405397 + AT_rich Low_complexity Low_complexity 1 22 0 4 1410 240 345 43 0 chr3 108207573 108207689 -51392094 + ORR1E LTR MaLR 45 165 -194 4 1410 1247 28 7 0 chr3 108207865 108208008 -51391775 - B1_Mm SINE Alu -1 146 3 4 1410 257 260 0 14 chr3 108208704 108208778 -51391005 + C-rich Low_complexity Low_complexity 1 73 0 4 1410 337 314 69 25 chr3 108209260 108209420 -51390363 - MIR SINE MIR -77 185 19 4 1410 1073 43 57 14 chr3 108210554 108210694 -51389089 + B1_Mus1 SINE Alu 3 148 0 4 1410 219 322 6 28 chr3 108210788 108210964 -51388819 + GA-rich Low_complexity Low_complexity 2 173 0 4 1410 184 292 62 0 chr3 108211930 108211978 -51387805 + L2b LINE L2 3305 3355 -20 4 1410 799 191 0 39 chr3 108212036 108212189 -51387594 + B1_Mus2 SINE Alu 1 147 0 4 1410 405 0 0 0 chr3 108212194 108212239 -51387544 + (CA)n Simple_repeat Simple_repeat 2 46 0 4 1410 258 105 0 0 chr3 108218339 108218377 -51381406 + (CAG)n Simple_repeat Simple_repeat 3 40 0 4 1410 24 32 0 0 chr3 108218491 108218522 -51381261 + GC_rich Low_complexity Low_complexity 1 31 0 4 1410 261 0 0 0 chr3 108219286 108219315 -51380468 + (CAGA)n Simple_repeat Simple_repeat 2 30 0 4 1410 270 222 134 12 chr3 108220029 108220111 -51379672 + B4A SINE B4 2 93 -199 4 1410 1442 169 180 0 chr3 108220113 108220479 -51379304 + Lx9 LINE L1 7213 7644 0 4 1410 267 323 19 83 chr3 108220494 108220602 -51379181 + B4A SINE B4 79 179 -45 4 1410 515 270 8 31 chr3 108221814 108221944 -51377839 + B4 SINE B4 20 146 -146 4 1410 477 0 0 0 chr3 108221989 108222042 -51377741 + (CA)n Simple_repeat Simple_repeat 1 53 0 4 1410 520 235 109 18 chr3 108222054 108222219 -51377564 + ORR1D2 LTR MaLR 30 209 -161 4 1410 606 178 138 8 chr3 108222223 108222353 -51377430 + B1_Mur2 SINE Alu 3 149 0 4 1410 649 300 83 49 chr3 108222359 108222488 -51377295 + Lx8 LINE L1 6063 6187 -1286 4 1410 198 0 0 0 chr3 108222488 108222510 -51377273 + (CG)n Simple_repeat Simple_repeat 2 23 0 4 1410 649 300 83 49 chr3 108222510 108222648 -51377135 + Lx8 LINE L1 6188 6330 -1143 4 1410 356 0 23 0 chr3 108222648 108222692 -51377091 + (CA)n Simple_repeat Simple_repeat 1 45 0 4 1410 649 300 83 49 chr3 108222692 108222749 -51377034 + Lx8 LINE L1 6331 6398 -1075 4 1410 637 197 55 0 chr3 108222752 108222879 -51376904 + B1_Mur1 SINE Alu 14 147 -2 4 1410 2542 233 56 3 chr3 108222895 108223506 -51376277 + Lx8 LINE L1 6386 7028 -445 4 1410 542 164 210 16 chr3 108223506 108223630 -51376153 + B1_Mur1 SINE Alu 1 148 -1 4 1410 670 295 8 88 chr3 108223654 108223892 -51375891 + ID_B1 SINE B4 3 221 -3 4 1410 23 0 0 0 chr3 108223893 108223916 -51375867 + AT_rich Low_complexity Low_complexity 1 23 0 4 1410 375 278 194 23 chr3 108224233 108224362 -51375421 - RSINE1 SINE B4 -4 161 11 4 1410 828 26 17 17 chr3 108224471 108224587 -51375196 + (TTCTC)n Simple_repeat Simple_repeat 4 119 0 4 1410 808 168 0 58 chr3 108224614 108224753 -51375030 - B1_Mur3 SINE Alu -14 135 5 4 1410 258 309 83 45 chr3 108224924 108225153 -51374630 + L2a LINE L2 3148 3426 0 4 1410 546 285 60 34 chr3 108225678 108225827 -51373956 - RSINE1 SINE B4 -10 155 3 4 1410 847 156 226 6 chr3 108227780 108227961 -51371822 - URR1B DNA MER1_type 0 225 5 4 1410 840 161 42 7 chr3 108230596 108230740 -51369043 - B1_Mur2 SINE Alu 0 149 1 4 1410 235 277 30 15 chr3 108231943 108232009 -51367774 - MIR SINE MIR -172 90 24 4 1410 350 244 0 109 chr3 108232513 108232614 -51367169 + PB1D10 SINE Alu 27 116 -1 4 1410 445 219 187 0 chr3 108233143 108233266 -51366517 + RSINE1 SINE B4 3 148 -17 4 1410 221 280 53 13 chr3 108233322 108233398 -51366385 + B1F2 SINE Alu 15 93 -56 4 1410 660 87 0 0 chr3 108233465 108233557 -51366226 + (TC)n Simple_repeat Simple_repeat 1 92 0 4 1410 208 135 0 0 chr3 108233557 108233594 -51366189 + (A)n Simple_repeat Simple_repeat 1 37 0 4 1410 376 219 53 98 chr3 108233597 108233635 -51366148 + ID_B1 SINE B4 97 130 -94 4 1410 1166 68 0 33 chr3 108233635 108233648 -51366135 - B1_Mus1 SINE Alu 0 148 139 4 1410 252 0 0 0 chr3 108233648 108233676 -51366107 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 4 1410 1166 68 0 33 chr3 108233676 108233813 -51365970 - B1_Mus1 SINE Alu -10 138 3 4 1410 376 219 53 98 chr3 108233813 108233906 -51365877 + ID_B1 SINE B4 131 222 -2 4 1410 228 237 136 0 chr3 108233909 108233968 -51365815 + ID4_ SINE ID 1 67 -16 4 1410 475 221 168 0 chr3 108234031 108234162 -51365621 + MLT1B LTR MaLR 184 336 -54 4 1410 289 303 69 20 chr3 108234163 108234264 -51365519 + ID_B1 SINE B4 84 189 -35 4 1410 346 305 38 0 chr3 108235214 108235319 -51364464 + PB1D7 SINE Alu 1 109 -11 4 1410 259 271 39 17 chr3 108235573 108235682 -51364101 + L2c LINE L2 3185 3323 -64 4 1410 1052 98 28 0 chr3 108237304 108237447 -51362336 + B1_Mus2 SINE Alu 1 147 0 4 1410 417 215 159 0 chr3 108237556 108237663 -51362120 + ID_B1 SINE B4 96 219 -5 4 1410 866 239 89 58 chr3 108237677 108238024 -51361759 - RMER10B LTR ERVL 0 398 41 4 1410 188 296 37 12 chr3 108239016 108239098 -51360685 + MIRc SINE MIR 34 117 -151 4 1410 523 207 17 43 chr3 108239173 108239289 -51360494 + B1F2 SINE Alu 37 149 0 4 1410 351 176 101 45 chr3 108239655 108239744 -51360039 + RLTR25B LTR ERVK 416 509 -519 4 1410 841 56 0 0 chr3 108239678 108239785 -51359998 + B1_Mus1 SINE Alu 40 146 -2 4 1410 207 0 0 0 chr3 108239785 108239808 -51359975 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 4 1410 559 189 202 16 chr3 108240127 108240251 -51359532 + B1_Mus1 SINE Alu 1 147 -1 4 1410 378 0 0 0 chr3 108240261 108240303 -51359480 + (TAAA)n Simple_repeat Simple_repeat 2 43 0 4 1410 485 259 26 8 chr3 108240770 108240887 -51358896 - PB1D9 SINE Alu -1 119 1 4 1410 26 0 0 0 chr3 108240896 108240922 -51358861 + AT_rich Low_complexity Low_complexity 1 26 0 4 1410 664 91 10 20 chr3 108240935 108241036 -51358747 + B1_Mus1 SINE Alu 2 101 -47 4 1410 548 148 0 0 chr3 108241006 108241087 -51358696 - B1_Mus2 SINE Alu -61 86 6 4 1410 891 175 38 113 chr3 108241270 108241483 -51358300 + B3A SINE B2 1 197 -1 4 1410 354 134 0 109 chr3 108241624 108241716 -51358067 - PB1D10 SINE Alu -34 83 2 4 1410 380 240 9 57 chr3 108242130 108242219 -51357564 + B4A SINE B4 146 231 -61 4 1410 743 191 30 0 chr3 108242219 108242350 -51357433 + B1_Mur4 SINE Alu 1 135 -15 4 1410 380 240 9 57 chr3 108242350 108242366 -51357417 + B4A SINE B4 232 246 -46 4 1410 312 91 0 0 chr3 108242366 108242410 -51357373 + (GGA)n Simple_repeat Simple_repeat 1 44 0 4 1410 513 0 0 0 chr3 108242410 108242467 -51357316 + (GGAA)n Simple_repeat Simple_repeat 4 60 0 4 1410 634 194 112 0 chr3 108242481 108242615 -51357168 + B1_Mur2 SINE Alu 1 149 0 4 1410 198 91 0 0 chr3 108242615 108242648 -51357135 + (A)n Simple_repeat Simple_repeat 1 33 0 4 1410 261 118 0 0 chr3 108242919 108242970 -51356813 + (CA)n Simple_repeat Simple_repeat 1 51 0 4 1410 264 293 96 22 chr3 108243121 108243257 -51356526 + Charlie5 DNA MER1_type 2343 2488 -136 4 1410 383 275 9 27 chr3 108243914 108244026 -51355757 + ID_B1 SINE B4 100 209 -15 4 1410 478 299 36 36 chr3 108244042 108244236 -51355547 + B3A SINE B2 2 195 -3 4 1410 247 325 0 0 chr3 108244804 108244884 -51354899 + ID4_ SINE ID 2 81 -2 4 1410 296 244 0 43 chr3 108245035 108245129 -51354654 + MER57-int LTR ERV1 7155 7244 -293 4 1410 276 200 142 57 chr3 108245299 108245405 -51354378 + PB1D9 SINE Alu 1 115 -5 4 1410 258 346 28 18 chr3 108245422 108245531 -51354252 + PB1D10 SINE Alu 7 116 -1 4 1410 499 260 185 38 chr3 108245555 108245614 -51354169 + ID SINE ID 14 78 -146 4 1410 306 50 0 0 chr3 108245614 108245654 -51354129 + (CA)n Simple_repeat Simple_repeat 2 41 0 4 1410 499 260 185 38 chr3 108245654 108245778 -51354005 + ID_B1 SINE B4 79 224 0 4 1410 1143 92 63 6 chr3 108245797 108245971 -51353812 - B2_Mm2 SINE B2 -7 188 5 4 1410 286 264 125 18 chr3 108246116 108246228 -51353555 + PB1 SINE Alu 1 124 -3 4 1410 316 200 188 10 chr3 108246447 108246543 -51353240 - PB1D10 SINE Alu 0 117 5 4 1410 637 233 15 8 chr3 108246559 108246689 -51353094 - B1_Mur1 SINE Alu -8 141 11 4 1410 777 136 54 31 chr3 108246892 108247021 -51352762 + B1_Mur3 SINE Alu 5 136 -13 4 1410 348 224 336 0 chr3 108248467 108248574 -51351209 - B1_Mur1 SINE Alu -2 147 5 4 1410 639 170 96 7 chr3 108248982 108249118 -51350665 - B1_Mur2 SINE Alu 0 149 2 4 1410 534 229 84 0 chr3 108249272 108249403 -51350380 + B1_Mur1 SINE Alu 1 142 -7 4 1410 821 194 192 11 chr3 108249868 108250050 -51349733 + B3 SINE B2 2 216 0 4 1410 940 176 0 0 chr3 108250057 108250205 -51349578 + B1_Mur4 SINE Alu 3 150 0 4 1410 3390 33 33 7 chr3 108250239 108250664 -51349119 - RLTR10C LTR ERVK 0 436 1 4 1410 1056 68 121 18 chr3 108250664 108250799 -51348984 + B2_Mm2 SINE B2 26 166 -29 4 1410 180 0 0 0 chr3 108250799 108250819 -51348964 + (CAAT)n Simple_repeat Simple_repeat 2 21 0 4 1410 1056 68 121 18 chr3 108250819 108250836 -51348947 + B2_Mm2 SINE B2 167 194 -1 4 1410 222 37 0 0 chr3 108250911 108250938 -51348845 + (TAAA)n Simple_repeat Simple_repeat 4 30 0 4 1410 386 307 0 0 chr3 108250973 108251074 -51348709 + RSINE1 SINE B4 5 105 -60 4 1410 209 210 16 0 chr3 108251253 108251315 -51348468 + CT-rich Low_complexity Low_complexity 4 66 0 4 1410 283 343 9 56 chr3 108251747 108251855 -51347928 + BC1_Mm scRNA scRNA 2 104 -48 4 1410 390 279 0 0 chr3 108252344 108252423 -51347360 - ID_B1 SINE B4 -40 184 106 4 1410 884 115 14 7 chr3 108252452 108252592 -51347191 + URR1A DNA MER1_type 44 184 -42 4 1410 182 291 56 34 chr3 108252714 108252803 -51346980 + L2c LINE L2 3023 3113 -274 5 1410 882 52 0 0 chr3 108252896 108253012 -51346771 + (TG)n Simple_repeat Simple_repeat 2 117 0 5 1410 530 326 0 7 chr3 108253025 108253164 -51346619 - B3A SINE B2 -59 139 2 5 1410 646 216 65 0 chr3 108253173 108253312 -51346471 - B1_Mur2 SINE Alu -1 148 1 5 1410 342 0 0 0 chr3 108253556 108253594 -51346189 + (CA)n Simple_repeat Simple_repeat 2 39 0 5 1410 507 179 150 9 chr3 108253604 108253717 -51346066 - B1F SINE Alu -12 137 9 5 1410 263 240 0 0 chr3 108254574 108254624 -51345159 - ID SINE ID -173 51 2 4 1410 765 129 0 0 chr3 108254674 108254790 -51344993 + B1_Mur4 SINE Alu 33 148 -2 5 1410 514 128 248 33 chr3 108255761 108255882 -51343901 - B1_Mur2 SINE Alu -2 147 1 5 1410 555 197 135 45 chr3 108255891 108256024 -51343759 - B1_Mus2 SINE Alu 0 147 3 5 1410 586 216 55 8 chr3 108256228 108256371 -51343412 + B1F2 SINE Alu 1 149 0 5 1410 596 265 52 15 chr3 108256375 108256509 -51343274 + RSINE1 SINE B4 6 144 -21 5 1410 980 136 7 0 chr3 108256643 108256790 -51342993 + B1_Mur3 SINE Alu 2 149 0 5 1410 215 232 0 0 chr3 108256790 108256846 -51342937 + A-rich Low_complexity Low_complexity 6 61 0 5 1410 211 250 55 156 chr3 108257280 108257389 -51342394 + PB1 SINE Alu 26 123 -4 5 1410 252 226 38 0 chr3 108257422 108257475 -51342308 - MER99 DNA hAT? -775 56 2 5 1410 869 285 15 20 chr3 108257573 108257777 -51342006 + B3 SINE B2 2 204 -12 5 1410 653 200 102 15 chr3 108257823 108257960 -51341823 + B1F SINE Alu 1 149 0 5 1410 378 214 12 14 chr3 108259080 108259164 -51340619 + ID4 SINE ID 3 85 -67 5 1410 295 267 0 0 chr3 108259167 108259242 -51340541 + L1MB7 LINE L1 6096 6170 -14 5 1410 207 0 0 0 chr3 108260741 108260764 -51339019 + (TG)n Simple_repeat Simple_repeat 2 24 0 5 1410 563 0 15 0 chr3 108262203 108262270 -51337513 + (TC)n Simple_repeat Simple_repeat 1 68 0 5 1410 360 0 0 0 chr3 108262270 108262310 -51337473 + (TG)n Simple_repeat Simple_repeat 2 41 0 5 1410 701 183 22 21 chr3 108263021 108263162 -51336621 - ID_B1 SINE B4 -71 221 80 5 1410 504 0 0 0 chr3 108263261 108263317 -51336466 + (TTCC)n Simple_repeat Simple_repeat 3 58 0 5 1410 1490 54 21 5 chr3 108263345 108263532 -51336251 - B2_Mm1t SINE B2 -2 191 2 5 1410 429 234 77 51 chr3 108263536 108263653 -51336130 - PB1D9 SINE Alu 0 120 1 5 1410 329 188 12 0 chr3 108264368 108264448 -51335335 + CT-rich Low_complexity Low_complexity 3 83 0 5 1410 337 278 28 9 chr3 108264448 108264557 -51335226 - PB1D9 SINE Alu -5 115 5 5 1410 908 251 75 17 chr3 108264767 108265006 -51334777 - B4 SINE B4 -38 254 2 5 1410 495 48 0 0 chr3 108265013 108265075 -51334708 + (TG)n Simple_repeat Simple_repeat 2 63 0 5 1410 338 276 13 0 chr3 108265090 108265166 -51334617 - ID_B1 SINE B4 -2 222 146 5 1410 222 328 47 0 chr3 108265351 108265415 -51334368 - ID_B1 SINE B4 -78 146 80 5 1411 632 201 52 15 chr3 108265497 108265633 -51334150 - B1_Mur1 SINE Alu -8 141 1 5 1411 225 0 0 0 chr3 108266708 108266733 -51333050 + (CA)n Simple_repeat Simple_repeat 2 26 0 5 1411 387 0 0 0 chr3 108266733 108266775 -51333008 + (GA)n Simple_repeat Simple_repeat 2 44 0 5 1411 483 247 0 0 chr3 108266782 108267085 -51332698 + (CA)n Simple_repeat Simple_repeat 1 303 0 5 1411 228 35 0 0 chr3 108267111 108267140 -51332643 + (CA)n Simple_repeat Simple_repeat 1 29 0 5 1411 356 217 122 9 chr3 108268084 108268191 -51331592 - PB1D7 SINE Alu 0 120 2 5 1411 232 107 52 26 chr3 108268398 108268475 -51331308 + T-rich Low_complexity Low_complexity 2 80 0 5 1411 226 352 70 43 chr3 108268988 108269175 -51330608 + MER65D LTR ERV1 197 388 -85 5 1411 820 185 70 0 chr3 108269615 108269772 -51330011 - URR1A DNA MER1_type -1 225 58 5 1411 260 245 38 0 chr3 108269858 108269911 -51329872 + ID_B1 SINE B4 163 217 -7 5 1411 279 0 0 0 chr3 108270051 108270082 -51329701 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 5 1411 562 250 34 27 chr3 108270082 108270220 -51329563 - ID_B1 SINE B4 -10 214 75 5 1411 233 323 0 0 chr3 108271020 108271082 -51328701 + (TATATG)n Simple_repeat Simple_repeat 3 64 0 5 1411 508 234 11 0 chr3 108271082 108271176 -51328607 - B4A SINE B4 -4 288 194 5 1411 327 200 52 26 chr3 108271190 108271267 -51328516 - B4A SINE B4 -200 92 14 5 1411 453 167 247 10 chr3 108271344 108271441 -51328342 + PB1D9 SINE Alu 1 120 0 5 1411 222 118 0 0 chr3 108271443 108271477 -51328306 + (TAAG)n Simple_repeat Simple_repeat 1 34 0 5 1411 340 180 104 57 chr3 108271662 108271768 -51328015 + PB1D7 SINE Alu 3 113 -7 5 1411 232 235 50 30 chr3 108271837 108271938 -51327845 + L1ME4a LINE L1 5958 6060 -64 5 1411 225 83 0 0 chr3 108271997 108272033 -51327750 + (T)n Simple_repeat Simple_repeat 1 36 0 5 1411 480 227 0 30 chr3 108272054 108272154 -51327629 + PB1D10 SINE Alu 21 117 0 5 1411 309 25 0 102 chr3 108272352 108272440 -51327343 + (GGGA)n Simple_repeat Simple_repeat 2 80 0 5 1411 836 203 154 0 chr3 108273257 108273439 -51326344 + B3 SINE B2 2 211 -5 5 1411 655 232 22 25 chr3 108273597 108273856 -51325927 - MTEa LTR MaLR -4 375 7 5 1411 925 198 88 39 chr3 108273888 108274093 -51325690 + B3 SINE B2 2 216 0 5 1411 211 286 35 18 chr3 108274552 108274609 -51325174 - PB1D7 SINE Alu -21 99 42 5 1411 523 195 152 16 chr3 108274630 108274755 -51325028 - B1F SINE Alu 0 149 8 5 1411 751 154 56 25 chr3 108275928 108276088 -51323695 + URR1A DNA MER1_type 62 226 0 5 1411 371 109 39 10 chr3 108276303 108276405 -51323378 + A-rich Low_complexity Low_complexity 2 106 0 5 1411 261 233 326 0 chr3 108276413 108276499 -51323284 + PB1D9 SINE Alu 1 114 -6 5 1411 1011 166 12 136 chr3 108276852 108277044 -51322739 - URR1A DNA MER1_type 0 226 67 5 1411 2540 121 69 25 chr3 108277044 108277478 -51322305 + RLTR11B LTR ERVK 1 453 0 5 1411 1011 166 12 136 chr3 108277478 108277543 -51322240 - URR1A DNA MER1_type -160 66 2 5 1411 297 309 125 20 chr3 108278106 108278127 -51321656 - B4A SINE B4 -44 248 136 5 1411 458 301 0 81 chr3 108278127 108278250 -51321533 - B1F SINE Alu 0 120 8 5 1411 211 167 0 36 chr3 108278261 108278317 -51321466 + T-rich Low_complexity Low_complexity 6 59 0 5 1411 967 96 15 0 chr3 108278322 108278458 -51321325 - B1_Mus1 SINE Alu 0 148 11 5 1411 974 132 82 53 chr3 108278479 108278687 -51321096 - B3 SINE B2 -2 214 1 5 1411 254 324 82 73 chr3 108279071 108279181 -51320602 - PB1D10 SINE Alu 0 117 7 5 1411 642 168 93 58 chr3 108279194 108279333 -51320450 + B1_Mur2 SINE Alu 5 148 -1 5 1411 681 57 0 11 chr3 108279337 108279426 -51320357 + B1_Mm SINE Alu 60 147 0 5 1411 372 94 0 0 chr3 108279426 108279479 -51320304 + (A)n Simple_repeat Simple_repeat 1 53 0 5 1411 434 45 0 56 chr3 108280657 108280728 -51319055 + B2_Mm1a SINE B2 127 193 0 5 1411 333 211 27 53 chr3 108280757 108280832 -51318951 + RSINE1 SINE B4 10 82 -83 5 1411 235 318 49 70 chr3 108280789 108280913 -51318870 - RMER12 LTR ERVK -437 885 765 5 1411 598 292 41 41 chr3 108280913 108281017 -51318766 + ID_B1 SINE B4 3 223 -1 5 1411 842 94 8 0 chr3 108281017 108281134 -51318649 + B1_Mur4 SINE Alu 33 150 0 5 1411 189 352 66 0 chr3 108281319 108281410 -51318373 - MIR SINE MIR -138 124 28 5 1411 381 43 0 0 chr3 108281550 108281597 -51318186 + (TG)n Simple_repeat Simple_repeat 1 47 0 5 1411 342 0 0 0 chr3 108281597 108281634 -51318149 + (GA)n Simple_repeat Simple_repeat 1 38 0 5 1411 182 158 129 81 chr3 108281812 108281874 -51317909 + L3 LINE CR1 2134 2198 -2291 5 1411 673 230 11 89 chr3 108282528 108282719 -51317064 - B3A SINE B2 -16 182 7 5 1411 321 243 35 78 chr3 108282801 108282880 -51316903 + L1MA6 LINE L1 6189 6263 -37 5 1411 2404 168 106 25 chr3 108282880 108283369 -51316414 - RLTR24 LTR ERV1 0 529 1 5 1411 321 243 35 78 chr3 108283369 108283405 -51316378 + L1MA6 LINE L1 6264 6299 -1 5 1411 356 291 0 25 chr3 108283478 108283559 -51316224 + ID_B1 SINE B4 79 157 -67 5 1411 683 228 21 0 chr3 108283559 108283704 -51316079 + B1_Mur3 SINE Alu 1 148 -1 5 1411 1455 188 92 25 chr3 108285538 108285854 -51313929 + ORR1D1 LTR MaLR 5 341 -33 5 1411 808 143 0 57 chr3 108285852 108285993 -51313790 + B1_Mur3 SINE Alu 10 142 -7 5 1411 344 170 0 0 chr3 108285989 108286042 -51313741 + ORR1D1 LTR MaLR 330 382 -2 5 1411 301 327 170 18 chr3 108286205 108286376 -51313407 - MIRb SINE MIR -38 230 34 5 1411 821 124 0 14 chr3 108286880 108287019 -51312764 + (GAAA)n Simple_repeat Simple_repeat 1 137 0 5 1411 780 231 7 0 chr3 108287047 108287194 -51312589 + B1_Mur1 SINE Alu 2 149 0 5 1411 814 203 95 11 chr3 108287359 108287538 -51312245 + Lx8 LINE L1 6473 6666 -807 5 1411 1264 235 84 9 chr3 108287543 108287887 -51311896 + Lx8 LINE L1 6826 7195 -278 5 1411 207 69 0 0 chr3 108287969 108287998 -51311785 + (CAGAGA)n Simple_repeat Simple_repeat 2 30 0 5 1411 432 0 0 0 chr3 108288353 108288401 -51311382 + (CA)n Simple_repeat Simple_repeat 2 49 0 5 1411 418 299 52 29 chr3 108288640 108288812 -51310971 - L1M5 LINE L1 -609 5631 5456 5 1411 928 141 0 26 chr3 108289187 108289340 -51310443 - B1_Mur4 SINE Alu 0 150 2 5 1411 270 266 0 147 chr3 108289649 108289724 -51310059 - ID4_ SINE ID -8 75 12 5 1411 841 200 14 0 chr3 108289761 108289906 -51309877 + B1_Mus1 SINE Alu 2 148 0 5 1411 218 128 43 0 chr3 108289907 108289954 -51309829 + A-rich Low_complexity Low_complexity 3 51 0 5 1411 1098 200 10 10 chr3 108289974 108290181 -51309602 - B3 SINE B2 -6 210 4 5 1411 304 208 27 200 chr3 108290119 108290185 -51309598 + B1_Mm SINE Alu 24 76 -71 5 1411 449 17 0 17 chr3 108290185 108290244 -51309539 + (TTTTG)n Simple_repeat Simple_repeat 2 59 0 5 1411 304 208 27 200 chr3 108290244 108290274 -51309509 + B1_Mm SINE Alu 77 96 -51 5 1411 1938 93 121 27 chr3 108290274 108290571 -51309212 + ORR1A2 LTR MaLR 1 325 -2 6 1411 304 208 27 200 chr3 108290571 108290623 -51309160 + B1_Mm SINE Alu 97 147 0 5 1411 183 129 0 0 chr3 108290623 108290654 -51309129 + (TAAG)n Simple_repeat Simple_repeat 1 31 0 6 1411 260 302 131 22 chr3 108290672 108290872 -51308911 + MIRc SINE MIR 4 227 -41 6 1411 826 193 286 10 chr3 108290918 108291154 -51308629 + ORR1D1 LTR MaLR 9 297 -77 6 1411 213 149 0 21 chr3 108291432 108291480 -51308303 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 6 1411 248 189 216 0 chr3 108292079 108292153 -51307630 + L1MB5 LINE L1 5902 5991 -183 6 1411 532 116 276 35 chr3 108292245 108292361 -51307422 + B1_Mus1 SINE Alu 5 148 0 6 1411 351 0 0 0 chr3 108292664 108292703 -51307080 + (GA)n Simple_repeat Simple_repeat 1 39 0 6 1411 945 119 51 51 chr3 108293024 108293201 -51306582 - B2_Mm2 SINE B2 -14 181 5 6 1411 488 16 16 0 chr3 108293202 108293263 -51306520 + (TC)n Simple_repeat Simple_repeat 2 63 0 6 1411 210 37 0 0 chr3 108293263 108293289 -51306494 + (TG)n Simple_repeat Simple_repeat 2 28 0 6 1411 306 0 0 0 chr3 108294354 108294388 -51305395 + (TG)n Simple_repeat Simple_repeat 1 34 0 6 1411 312 27 0 0 chr3 108294388 108294424 -51305359 + (GA)n Simple_repeat Simple_repeat 1 37 0 6 1411 298 61 41 0 chr3 108294518 108294567 -51305216 + (TTC)n Simple_repeat Simple_repeat 2 52 0 6 1411 387 0 0 0 chr3 108294567 108294610 -51305173 + (TG)n Simple_repeat Simple_repeat 2 44 0 6 1411 833 180 0 0 chr3 108294610 108294749 -51305034 - B1_Mur2 SINE Alu -10 139 1 6 1411 255 114 0 0 chr3 108295253 108295297 -51304486 + (TG)n Simple_repeat Simple_repeat 1 44 0 6 1411 188 0 0 69 chr3 108295454 108295483 -51304300 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 6 1411 445 146 126 0 chr3 108295604 108295707 -51304076 + Lx6 LINE L1 7336 7451 -9 6 1411 223 154 0 0 chr3 108295899 108295938 -51303845 + G-rich Low_complexity Low_complexity 1 39 0 6 1411 261 0 0 0 chr3 108296344 108296373 -51303410 + (T)n Simple_repeat Simple_repeat 1 29 0 6 1411 349 311 25 65 chr3 108296381 108296562 -51303221 + Kanga1d DNA Tc2 476 609 0 6 1411 915 201 58 10 chr3 108296865 108297071 -51302712 - B3 SINE B2 0 216 1 6 1411 437 302 97 35 chr3 108297105 108297182 -51302601 - RSINE1 SINE B4 0 165 77 6 1411 2055 135 123 8 chr3 108297182 108297556 -51302227 - MTC LTR MaLR -4 417 1 6 1411 437 302 97 35 chr3 108297556 108297622 -51302161 - RSINE1 SINE B4 -89 76 13 6 1411 296 267 134 72 chr3 108297629 108297726 -51302057 - ID_B1 SINE B4 -37 187 85 6 1411 302 310 70 62 chr3 108298070 108298261 -51301522 - MIRc SINE MIR -36 232 38 6 1411 926 253 115 43 chr3 108298794 108299099 -51300684 - MTEa LTR MaLR -2 377 51 6 1411 384 151 123 0 chr3 108299167 108299240 -51300543 - B3 SINE B2 -134 82 1 6 1411 789 196 120 22 chr3 108299776 108299959 -51299824 + B3 SINE B2 9 209 -7 6 1411 34 42 0 0 chr3 108299990 108300038 -51299745 + AT_rich Low_complexity Low_complexity 1 48 0 6 1411 355 237 13 0 chr3 108300049 108300125 -51299658 - ID4 SINE ID -6 77 1 6 1411 333 291 13 31 chr3 108300132 108300248 -51299535 - MIRb SINE MIR -121 147 25 6 1411 275 287 11 11 chr3 108300786 108300881 -51298902 + L1MB3 LINE L1 5866 5960 -223 6 1411 1537 145 39 32 chr3 108301156 108301440 -51298343 + Lx4B LINE L1 6773 7058 0 6 1411 910 229 55 0 chr3 108301463 108301664 -51298119 + B3 SINE B2 1 212 -4 6 1411 757 227 0 7 chr3 108301756 108301898 -51297885 - RSINE1 SINE B4 -24 141 1 6 1411 300 359 9 28 chr3 108301934 108302040 -51297743 + PB1D10 SINE Alu 6 109 -8 6 1411 320 164 15 0 chr3 108302302 108302369 -51297414 + GA-rich Low_complexity Low_complexity 2 69 0 6 1411 284 274 0 56 chr3 108303019 108303108 -51296675 + B4 SINE B4 1 84 -208 6 1411 22 35 0 0 chr3 108303140 108303169 -51296614 + AT_rich Low_complexity Low_complexity 1 29 0 6 1411 384 309 89 24 chr3 108303179 108303348 -51296435 + B4A SINE B4 111 290 -2 6 1411 197 158 35 0 chr3 108303382 108303439 -51296344 + (CATA)n Simple_repeat Simple_repeat 2 60 0 6 1411 381 282 183 0 chr3 108303538 108303669 -51296114 - LSU-rRNA_Hsa rRNA rRNA -1 5034 4880 6 1411 278 79 0 0 chr3 108304444 108304482 -51295301 + B2_Mm2 SINE B2 1 38 -157 6 1411 372 253 86 57 chr3 108304691 108304919 -51294864 + RLTR13D3 LTR ERVK 667 1114 0 6 1411 286 279 0 0 chr3 108305244 108305312 -51294471 - ID_B1 SINE B4 -1 223 156 6 1411 334 272 117 0 chr3 108305366 108305469 -51294314 - PB1D10 SINE Alu -2 115 1 6 1411 910 218 48 0 chr3 108306655 108306861 -51292922 + B3 SINE B2 1 216 0 6 1411 349 267 76 38 chr3 108307280 108307385 -51292398 - PB1D10 SINE Alu -4 113 5 6 1411 516 277 29 65 chr3 108307426 108307565 -51292218 - RSINE1 SINE B4 0 165 32 6 1411 213 278 12 122 chr3 108308351 108308433 -51291350 + ID4 SINE ID 9 81 -2 6 1411 437 138 0 12 chr3 108308442 108308523 -51291260 + (GAAA)n Simple_repeat Simple_repeat 4 83 0 6 1411 576 284 0 16 chr3 108309421 108309513 -51290270 + ID_B1 SINE B4 83 209 -15 6 1411 212 216 59 0 chr3 108309513 108309550 -51290233 + PB1D10 SINE Alu 63 102 -15 6 1411 696 148 0 25 chr3 108309550 108309668 -51290115 + PB1D9 SINE Alu 3 117 -3 6 1411 212 216 59 0 chr3 108309668 108309681 -51290102 + PB1D10 SINE Alu 103 115 -2 6 1411 543 276 63 6 chr3 108310008 108310183 -51289600 - MLT1C LTR MaLR -41 426 242 6 1411 235 227 45 15 chr3 108310196 108310263 -51289520 - PB1D10 SINE Alu -3 114 46 6 1411 453 236 140 13 chr3 108310293 108310443 -51289340 - MLT1C LTR MaLR -242 225 57 6 1411 222 277 92 0 chr3 108310628 108310693 -51289090 + B1F2 SINE Alu 15 85 -64 6 1411 630 304 52 14 chr3 108310806 108310819 -51288964 - ID_B1 SINE B4 -6 218 207 6 1411 351 0 0 0 chr3 108310819 108310858 -51288925 + (CA)n Simple_repeat Simple_repeat 2 40 0 6 1411 630 304 52 14 chr3 108310858 108311054 -51288729 - ID_B1 SINE B4 -18 206 1 6 1411 279 283 21 21 chr3 108311104 108311198 -51288585 - ID_B1 SINE B4 -4 220 127 6 1411 252 275 143 27 chr3 108311198 108311212 -51288571 - B1_Mur1 SINE Alu -1 144 24 6 1411 2842 61 0 151 chr3 108311325 108311790 -51287993 - MTA_Mm LTR MaLR -1 395 1 6 1411 430 179 133 31 chr3 108311933 108312031 -51287752 + B3 SINE B2 104 211 -5 6 1411 264 295 35 9 chr3 108312266 108312379 -51287404 - BC1_Mm scRNA scRNA -35 117 2 6 1411 811 102 23 29 chr3 108312434 108312606 -51287177 + T-rich Low_complexity Low_complexity 3 173 0 6 1411 582 262 49 27 chr3 108312625 108312807 -51286976 - ID_B1 SINE B4 -46 246 61 6 1411 233 229 0 0 chr3 108313072 108313120 -51286663 - B4A SINE B4 -3 289 242 6 1411 483 74 37 0 chr3 108313345 108313426 -51286357 + (CCCCCT)n Simple_repeat Simple_repeat 5 88 0 6 1411 464 241 17 35 chr3 108313581 108313697 -51286086 - B4A SINE B4 -68 224 111 6 1411 570 257 7 34 chr3 108313765 108313914 -51285869 - B1F2 SINE Alu 0 149 5 6 1411 702 167 0 0 chr3 108314636 108314768 -51285015 + (TG)n Simple_repeat Simple_repeat 2 133 0 6 1411 417 243 136 0 chr3 108314835 108314938 -51284845 - B4A SINE B4 -91 201 85 6 1411 836 180 56 6 chr3 108314951 108315113 -51284670 - B3 SINE B2 -4 212 43 6 1411 314 286 20 10 chr3 108315128 108315227 -51284556 - B4A SINE B4 -191 101 2 6 1411 826 231 44 20 chr3 108315266 108315469 -51284314 - B3 SINE B2 -8 208 1 6 1411 1214 48 0 0 chr3 108315511 108315657 -51284126 + B1_Mus1 SINE Alu 1 146 -2 6 1411 227 31 31 0 chr3 108315751 108315783 -51284000 + (TC)n Simple_repeat Simple_repeat 1 33 0 6 1411 262 159 23 0 chr3 108315790 108315834 -51283949 - B3 SINE B2 -152 64 20 6 1411 759 264 6 23 chr3 108315935 108316106 -51283677 + B3 SINE B2 1 168 -48 6 1411 229 147 0 0 chr3 108316141 108316175 -51283608 - B1_Mus1 SINE Alu -114 34 1 6 1411 288 135 39 7 chr3 108316220 108316284 -51283499 + B3 SINE B2 1 64 -134 6 1411 408 40 0 0 chr3 108316292 108316342 -51283441 + (CA)n Simple_repeat Simple_repeat 1 50 0 6 1411 21 0 0 0 chr3 108316342 108316363 -51283420 + AT_rich Low_complexity Low_complexity 1 21 0 6 1411 279 0 0 0 chr3 108316422 108316453 -51283330 + (TTTG)n Simple_repeat Simple_repeat 3 33 0 6 1411 343 200 123 12 chr3 108316453 108316534 -51283249 - ID_B1 SINE B4 -13 211 122 6 1411 284 295 43 43 chr3 108316685 108316802 -51282981 + MLT1C LTR MaLR 46 162 -228 6 1411 949 87 0 0 chr3 108316783 108316909 -51282874 + B1_Mus2 SINE Alu 9 134 -13 6 1411 710 78 0 10 chr3 108316910 108317013 -51282770 + (GAA)n Simple_repeat Simple_repeat 1 102 0 6 1411 389 238 110 130 chr3 108317069 108317315 -51282468 + MLT1C LTR MaLR 197 437 -30 6 1411 401 236 50 83 chr3 108317279 108317399 -51282384 - PB1D9 SINE Alu -2 118 3 6 1411 230 258 39 205 chr3 108317363 108317408 -51282375 - MT2B LTR ERVL -305 296 191 6 1411 536 194 39 0 chr3 108317408 108317511 -51282272 - PB1D9 SINE Alu 0 120 14 6 1411 384 217 209 68 chr3 108317519 108317682 -51282101 - B2_Mm1t SINE B2 -6 187 2 6 1411 239 273 36 136 chr3 108318066 108318206 -51281577 + MT2B LTR ERVL 153 278 -323 6 1411 801 184 0 41 chr3 108318084 108318231 -51281552 + B1_Mur1 SINE Alu 7 147 -2 6 1411 336 64 0 0 chr3 108318235 108318282 -51281501 + (CA)n Simple_repeat Simple_repeat 2 48 0 6 1411 711 223 30 43 chr3 108318344 108318508 -51281275 + RSINE1 SINE B4 2 163 -2 6 1411 1245 78 0 37 chr3 108318670 108318697 -51281086 - B2_Mm2 SINE B2 -15 180 156 6 1411 252 0 0 0 chr3 108318697 108318725 -51281058 + (TTTA)n Simple_repeat Simple_repeat 1 28 0 6 1411 1245 78 0 37 chr3 108318725 108318884 -51280899 - B2_Mm2 SINE B2 -40 155 1 6 1411 370 217 0 20 chr3 108319184 108319272 -51280511 - B1_Mur1 SINE Alu -2 147 35 6 1411 495 311 7 13 chr3 108319503 108319653 -51280130 + B1_Mur2 SINE Alu 1 149 0 6 1411 3686 48 0 5 chr3 108319766 108320208 -51279575 + L1Md_F2 LINE L1 6132 6571 -11 6 1411 3461 33 2 5 chr3 108320584 108320981 -51278802 + MTA_Mm LTR MaLR 1 396 0 7 1411 722 289 94 26 chr3 108321004 108321271 -51278512 + B4A SINE B4 1 285 -7 7 1411 390 57 0 0 chr3 108321275 108321328 -51278455 + (CA)n Simple_repeat Simple_repeat 2 54 0 7 1411 834 175 35 7 chr3 108321741 108321885 -51277898 - B1_Mur1 SINE Alu -1 148 1 7 1411 617 300 12 18 chr3 108322624 108322787 -51276996 + RSINE1 SINE B4 4 165 0 7 1411 264 337 100 80 chr3 108322631 108322831 -51276952 + B3 SINE B2 11 214 -2 7 1411 621 259 28 14 chr3 108323110 108323255 -51276528 + RSINE1 SINE B4 13 159 -6 7 1411 290 252 117 8 chr3 108323812 108323932 -51275851 + L1MC LINE L1 5607 5739 -2143 7 1411 467 290 70 28 chr3 108323967 108324109 -51275674 + RSINE1 SINE B4 6 153 -12 7 1411 220 319 142 42 chr3 108324109 108324157 -51275626 + B3 SINE B2 5 213 -3 7 1411 1008 130 7 0 chr3 108324232 108324378 -51275405 + B1_Mur4 SINE Alu 3 149 -1 7 1411 369 235 219 0 chr3 108324488 108324607 -51275176 + MIR SINE MIR 6 150 -112 7 1411 190 427 0 0 chr3 108324640 108324736 -51275047 - L2a LINE L2 -55 3371 3276 7 1411 799 189 13 38 chr3 108324747 108324906 -51274877 + RSINE1 SINE B4 11 165 0 7 1411 271 222 116 141 chr3 108324906 108324940 -51274843 + B3A SINE B2 25 194 -4 7 1411 505 172 35 0 chr3 108324959 108325046 -51274737 + B3A SINE B2 5 94 -104 7 1411 198 0 0 0 chr3 108325151 108325173 -51274610 + (TTTTTG)n Simple_repeat Simple_repeat 2 23 0 7 1411 1194 68 0 20 chr3 108325176 108325326 -51274457 - B1_Mm SINE Alu 0 147 1 7 1411 943 151 22 0 chr3 108325510 108325649 -51274134 + B1_Mur4 SINE Alu 1 142 -8 7 1411 272 305 81 54 chr3 108325664 108325775 -51274008 + ID_B1 SINE B4 83 196 -28 7 1411 230 149 42 21 chr3 108325781 108325829 -51273954 + GA-rich Low_complexity Low_complexity 5 53 0 7 1411 1628 232 103 16 chr3 108325952 108326332 -51273451 + MTD LTR MaLR 1 404 -15 7 1411 552 304 76 63 chr3 108326382 108326698 -51273085 + MLT1H LTR MaLR 222 541 -8 7 1411 183 129 0 0 chr3 108326704 108326735 -51273048 + (TCC)n Simple_repeat Simple_repeat 3 33 0 7 1411 9917 69 1 8 chr3 108326800 108328850 -51270933 + L1_Mus1 LINE L1 4527 6567 0 7 1411 257 280 145 13 chr3 108329106 108329120 -51270663 - BC1_Mm scRNA scRNA -63 89 4 7 1411 332 210 177 0 chr3 108329120 108329182 -51270601 - ID SINE ID -148 76 4 7 1411 496 320 0 8 chr3 108329182 108329303 -51270480 - B1F SINE Alu -6 143 24 7 1411 586 287 52 20 chr3 108329395 108329644 -51270139 + L1M5 LINE L1 5566 5822 -418 7 1411 1405 66 27 0 chr3 108329664 108329847 -51269936 + B2_Mm2 SINE B2 1 188 -7 7 1411 1647 27 0 11 chr3 108329949 108330139 -51269644 + B2_Mm1a SINE B2 1 188 -5 7 1411 949 134 12 6 chr3 108330267 108330439 -51269344 + GA-rich Low_complexity Low_complexity 1 173 0 7 1411 1143 188 34 5 chr3 108330726 108330935 -51268848 - B3 SINE B2 0 216 2 7 1411 467 349 81 76 chr3 108330940 108331555 -51268228 - L2 LINE L2 -639 2780 2163 7 1411 924 214 22 0 chr3 108331558 108331736 -51268047 - B3 SINE B2 -34 182 1 7 1411 180 0 0 0 chr3 108331784 108331804 -51267979 + (GTTTG)n Simple_repeat Simple_repeat 2 21 0 7 1411 828 147 7 40 chr3 108331819 108331968 -51267815 - B1_Mur3 SINE Alu -2 147 4 7 1411 366 250 47 124 chr3 108331820 108331989 -51267794 - B4 SINE B4 -69 223 68 7 1411 295 298 20 41 chr3 108332034 108332132 -51267651 + PB1D10 SINE Alu 2 97 -20 7 1411 200 338 44 50 chr3 108332356 108332515 -51267268 - MIRb SINE MIR -16 252 95 7 1411 528 286 173 21 chr3 108332545 108332834 -51266949 - Charlie5 DNA MER1_type 0 2624 2292 7 1411 1149 88 0 0 chr3 108332835 108332982 -51266801 + B1_Mus1 SINE Alu 2 148 0 7 1411 384 125 0 0 chr3 108332982 108333046 -51266737 + (A)n Simple_repeat Simple_repeat 1 64 0 7 1411 290 240 88 58 chr3 108333305 108333442 -51266341 - B1F SINE Alu -1 148 8 7 1411 198 0 0 0 chr3 108333442 108333464 -51266319 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 7 1411 782 205 113 21 chr3 108333653 108333847 -51265936 - B3 SINE B2 -4 212 1 7 1411 363 44 0 0 chr3 108334570 108334615 -51265168 + (TC)n Simple_repeat Simple_repeat 2 46 0 7 1411 474 281 30 204 chr3 108334615 108334739 -51265044 - ID_B1 SINE B4 -3 221 111 7 1411 483 224 155 19 chr3 108334739 108334894 -51264889 + B3A SINE B2 5 180 -18 7 1411 474 281 30 204 chr3 108334894 108335033 -51264750 - ID_B1 SINE B4 -114 110 4 7 1411 1174 81 0 17 chr3 108335320 108335560 -51264223 + (TTTC)n Simple_repeat Simple_repeat 1 236 0 7 1411 297 331 13 45 chr3 108335659 108335814 -51263969 - MIRb SINE MIR -16 252 103 7 1411 207 0 0 0 chr3 108336025 108336048 -51263735 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 7 1411 213 351 27 13 chr3 108337303 108337378 -51262405 - RSINE1 SINE B4 0 165 90 7 1411 228 322 109 8 chr3 108337351 108337470 -51262313 - B1_Mus1 SINE Alu -17 131 1 7 1411 688 269 6 6 chr3 108337470 108337532 -51262251 - ID SINE ID -143 81 20 7 1411 853 260 15 15 chr3 108337671 108337870 -51261913 - B3 SINE B2 -4 212 14 7 1411 602 202 0 12 chr3 108337883 108338011 -51261772 - B1_Mur3 SINE Alu -22 127 3 7 1411 216 0 0 0 chr3 108339148 108339172 -51260611 + (T)n Simple_repeat Simple_repeat 1 24 0 7 1411 207 0 0 0 chr3 108339435 108339458 -51260325 + (A)n Simple_repeat Simple_repeat 1 23 0 7 1411 594 0 0 0 chr3 108340077 108340143 -51259640 + (TA)n Simple_repeat Simple_repeat 2 67 0 7 1411 189 74 0 0 chr3 108341557 108341584 -51258199 + (TG)n Simple_repeat Simple_repeat 1 27 0 7 1411 321 234 0 0 chr3 108341927 108341991 -51257792 + ID_B1 SINE B4 160 223 -1 7 1411 694 189 104 39 chr3 108343290 108343472 -51256311 + B2_Mm2 SINE B2 1 194 -1 7 1411 408 88 0 0 chr3 108343622 108343679 -51256104 + (A)n Simple_repeat Simple_repeat 1 57 0 7 1411 649 131 9 0 chr3 108344063 108344170 -51255613 - B1_Mur3 SINE Alu -1 148 41 7 1411 598 102 20 10 chr3 108344225 108344324 -51255459 - B1_Mur3 SINE Alu -8 141 42 7 1411 662 156 23 0 chr3 108344324 108344452 -51255331 + (TCTCTG)n Simple_repeat Simple_repeat 4 134 0 7 1411 575 238 27 47 chr3 108345600 108345750 -51254033 - B1F SINE Alu -1 148 2 7 1411 924 146 7 0 chr3 108345914 108346058 -51253725 + B1_Mus1 SINE Alu 3 147 -1 7 1411 214 50 24 24 chr3 108346616 108346657 -51253126 + (TTTG)n Simple_repeat Simple_repeat 4 44 0 7 1411 423 194 0 0 chr3 108346675 108346747 -51253036 - ID4 SINE ID -10 73 2 7 1411 216 236 0 18 chr3 108348140 108348196 -51251587 + (TA)n Simple_repeat Simple_repeat 1 55 0 7 1411 736 224 77 120 chr3 108348260 108348559 -51251224 + B4A SINE B4 1 286 -6 7 1411 401 290 40 0 chr3 108348650 108348750 -51251033 + PB1D10 SINE Alu 7 110 -7 7 1411 450 239 9 44 chr3 108348926 108349040 -51250743 + ID_B1 SINE B4 110 219 -5 7 1411 421 219 10 10 chr3 108349040 108349137 -51250646 + L1MA6 LINE L1 3582 3678 -2465 7 1411 341 308 0 17 chr3 108349138 108349257 -51250526 + (CA)n Simple_repeat Simple_repeat 2 118 0 7 1411 1456 166 40 60 chr3 108349376 108349568 -51250215 + ORR1D1 LTR MaLR 30 228 -146 7 1411 678 128 0 0 chr3 108349568 108349685 -51250098 + (CCTG)n Simple_repeat Simple_repeat 2 118 0 7 1411 1456 166 40 60 chr3 108349685 108349711 -51250072 + ORR1D1 LTR MaLR 229 248 -126 7 1411 1348 51 37 4 chr3 108349711 108350203 -51249580 + (CCTG)n Simple_repeat Simple_repeat 1 507 0 7 1411 1456 166 40 60 chr3 108350203 108350330 -51249453 + ORR1D1 LTR MaLR 249 373 -1 7 1411 320 256 111 0 chr3 108350330 108350420 -51249363 + L1MA6 LINE L1 3715 3814 -2329 7 1411 2114 126 49 36 chr3 108350452 108350840 -51248943 + MTC LTR MaLR 21 413 -8 7 1411 1158 68 0 0 chr3 108350865 108351011 -51248772 + B1_Mus2 SINE Alu 1 146 -1 7 1411 455 258 81 165 chr3 108351029 108351289 -51248494 + L1MA6 LINE L1 3983 4223 -1920 7 1411 846 189 7 0 chr3 108351289 108351432 -51248351 - B1_Mus1 SINE Alu 0 148 5 7 1411 455 258 81 165 chr3 108351432 108351529 -51248254 + L1MA6 LINE L1 4224 4310 -1833 7 1411 1419 65 0 16 chr3 108351531 108351720 -51248063 + B2_Mm2 SINE B2 2 187 -8 7 1411 486 211 18 9 chr3 108351738 108351848 -51247935 + ID_B1 SINE B4 112 222 -2 7 1411 419 200 14 0 chr3 108351848 108351918 -51247865 + ID4 SINE ID 2 72 -11 7 1411 775 263 150 0 chr3 108351945 108352043 -51247740 + L1MA6 LINE L1 4317 4449 -1694 7 1411 296 96 39 0 chr3 108352043 108352095 -51247688 + (CCTG)n Simple_repeat Simple_repeat 2 55 0 7 1411 775 246 93 0 chr3 108352095 108352297 -51247486 + L1MA6 LINE L1 4450 4673 -1470 7 1411 244 274 71 12 chr3 108352298 108352383 -51247400 + B4 SINE B4 3 92 -200 7 1411 577 215 106 12 chr3 108352383 108352543 -51247240 + B3 SINE B2 1 175 -41 7 1411 745 186 14 7 chr3 108352555 108352701 -51247082 + B1_Mus2 SINE Alu 1 147 0 7 1411 2838 36 39 0 chr3 108352828 108353160 -51246623 - ORR1A1 LTR MaLR 0 346 2 7 1411 296 267 121 0 chr3 108353178 108353294 -51246489 + L1MA6 LINE L1 4715 4844 -1299 7 1411 714 194 0 30 chr3 108353304 108353437 -51246346 - B1_Mur2 SINE Alu -7 142 14 7 1411 1172 226 30 4 chr3 108353449 108353715 -51246068 + MTD LTR MaLR 131 403 -16 7 1411 381 258 40 40 chr3 108353724 108353849 -51245934 + L1MA6 LINE L1 5355 5479 -692 7 1411 292 295 39 0 chr3 108353867 108353945 -51245838 + ID4 SINE ID 2 82 -1 7 1411 622 150 83 45 chr3 108353984 108354117 -51245666 + B1_Mur1 SINE Alu 10 147 -2 7 1411 189 74 0 0 chr3 108354118 108354145 -51245638 + (CCAA)n Simple_repeat Simple_repeat 4 30 0 7 1411 732 206 44 30 chr3 108354211 108354418 -51245365 + L1MA6 LINE L1 5576 5788 -515 7 1411 480 258 76 38 chr3 108354418 108354472 -51245311 + RSINE1 SINE B4 3 53 -112 7 1411 2017 147 82 8 chr3 108354472 108354828 -51244955 + RLTR14 LTR ERV1 1 382 0 7 1411 480 258 76 38 chr3 108354828 108354930 -51244853 + RSINE1 SINE B4 54 165 0 7 1411 1365 125 125 0 chr3 108355028 108355292 -51244491 - MTC LTR MaLR -20 401 105 7 1411 904 49 0 8 chr3 108355293 108355416 -51244367 + B1_Mus1 SINE Alu 27 148 0 7 1411 695 69 13 52 chr3 108355418 108355571 -51244212 + (GAGAA)n Simple_repeat Simple_repeat 4 150 0 8 1411 464 180 80 9 chr3 108355571 108355683 -51244100 - MTC LTR MaLR -301 120 1 7 1411 637 204 192 23 chr3 108355699 108355960 -51243823 + L1MA6 LINE L1 5810 6114 -186 7 1411 902 158 0 7 chr3 108356102 108356249 -51243534 + B1_Mur4 SINE Alu 5 150 0 8 1411 215 228 18 0 chr3 108356502 108356559 -51243224 + (CA)n Simple_repeat Simple_repeat 1 58 0 8 1411 392 212 70 17 chr3 108356596 108356711 -51243072 + ID_B1 SINE B4 104 224 0 8 1411 740 61 0 0 chr3 108356872 108356971 -51242812 + B2_Mm2 SINE B2 2 100 -95 8 1411 24 0 0 0 chr3 108357450 108357474 -51242309 + GC_rich Low_complexity Low_complexity 1 24 0 8 1411 222 284 13 13 chr3 108357865 108357940 -51241843 - PB1D10 SINE Alu -26 91 17 8 1411 364 339 60 35 chr3 108358065 108358181 -51241602 - RSINE1 SINE B4 -19 146 28 8 1411 1114 61 7 39 chr3 108358181 108358334 -51241449 + B1_Mus1 SINE Alu 1 148 0 8 1411 468 252 80 22 chr3 108358569 108358707 -51241076 + B1_Mur1 SINE Alu 4 149 0 8 1411 717 132 136 23 chr3 108359053 108359185 -51240598 - B1_Mur3 SINE Alu 0 149 3 8 1411 180 0 0 0 chr3 108359553 108359573 -51240210 + (A)n Simple_repeat Simple_repeat 1 20 0 8 1411 563 154 77 0 chr3 108361205 108361309 -51238474 + B1_Mur3 SINE Alu 13 124 -25 8 1411 285 269 0 0 chr3 108361429 108361496 -51238287 - ID4 SINE ID -1 82 16 8 1411 535 225 26 60 chr3 108362048 108362199 -51237584 - B1_Mur1 SINE Alu 0 149 4 8 1411 21 0 0 0 chr3 108362283 108362304 -51237479 + AT_rich Low_complexity Low_complexity 1 21 0 8 1411 249 241 56 0 chr3 108362482 108362536 -51237247 - AluF_3 SINE Alu -118 193 137 8 1411 229 241 51 17 chr3 108362488 108362547 -51237236 - B4 SINE B4 -156 136 76 8 1411 322 362 19 26 chr3 108362669 108362825 -51236958 + B4 SINE B4 25 179 -113 8 1411 296 279 0 0 chr3 108363876 108363962 -51235821 - PB1D10 SINE Alu -15 102 17 8 1411 214 29 57 0 chr3 108365886 108365921 -51233862 + (TTTTG)n Simple_repeat Simple_repeat 3 39 0 8 1411 1254 47 0 0 chr3 108366575 108366723 -51233060 + B1_Mus1 SINE Alu 1 148 0 8 1411 483 252 25 0 chr3 108366881 108367000 -51232783 + B3A SINE B2 2 123 -75 8 1411 1578 104 147 4 chr3 108367127 108367406 -51232377 + ORR1A4 LTR MaLR 3 321 -8 8 1411 213 121 0 0 chr3 108367868 108367901 -51231882 + (TGAG)n Simple_repeat Simple_repeat 1 33 0 8 1411 291 317 0 12 chr3 108367949 108368032 -51231751 + ID2 SINE ID 2 83 0 8 1411 579 296 66 0 chr3 108368196 108368348 -51231435 - RSINE1 SINE B4 0 165 4 8 1411 1745 169 64 45 chr3 108368897 108369274 -51230509 + ORR1C2 LTR MaLR 1 384 0 8 1411 378 256 23 0 chr3 108369318 108369404 -51230379 + B1_Mur3 SINE Alu 1 88 -61 8 1411 1069 86 0 0 chr3 108370000 108370139 -51229644 + B1_Mus1 SINE Alu 1 139 -9 8 1411 450 0 0 0 chr3 108370139 108370189 -51229594 + (CAAAA)n Simple_repeat Simple_repeat 2 51 0 8 1411 667 72 16 82 chr3 108370204 108370326 -51229457 + PB1D9 SINE Alu 6 119 -1 8 1411 1274 123 0 16 chr3 108370328 108370518 -51229265 + B2_Mm2 SINE B2 1 187 -8 8 1411 601 250 38 13 chr3 108371890 108372048 -51227735 + RSINE1 SINE B4 2 163 -2 8 1411 642 296 16 24 chr3 108372219 108372472 -51227311 - RMER15 LTR ERVL -35 540 290 8 1411 1595 32 27 0 chr3 108372499 108372685 -51227098 - B2_Mm1a SINE B2 -1 192 2 8 1411 1149 82 0 0 chr3 108373286 108373433 -51226350 - B1_Mus1 SINE Alu -1 147 1 8 1411 517 194 10 0 chr3 108373446 108373544 -51226239 - PB1D9 SINE Alu -21 99 1 8 1411 395 278 15 60 chr3 108373576 108373710 -51226073 - RSINE1 SINE B4 -33 132 5 8 1411 249 157 0 0 chr3 108373726 108373759 -51226024 + A-rich Low_complexity Low_complexity 1 33 0 8 1411 1125 75 0 0 chr3 108373759 108373906 -51225877 + B1_Mus1 SINE Alu 2 148 0 8 1411 249 157 0 0 chr3 108373906 108373923 -51225860 + A-rich Low_complexity Low_complexity 34 50 0 8 1411 862 236 55 5 chr3 108373974 108374174 -51225609 + B3 SINE B2 1 210 -6 8 1411 26 50 0 0 chr3 108374178 108374218 -51225565 + AT_rich Low_complexity Low_complexity 1 40 0 8 1411 325 278 55 9 chr3 108374324 108374433 -51225350 - PB1D7 SINE Alu -6 114 1 8 1411 701 79 34 34 chr3 108375353 108375471 -51224312 + PB1D9 SINE Alu 3 120 0 8 1411 332 211 28 0 chr3 108375644 108375715 -51224068 + tRNA-Ala-GCY_ tRNA tRNA 1 73 -2 8 1411 374 295 56 21 chr3 108376007 108376019 -51223764 - B1F1 SINE Alu 0 149 140 8 1411 225 0 0 0 chr3 108376019 108376044 -51223739 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 8 1411 374 295 56 21 chr3 108376044 108376173 -51223610 - B1F1 SINE Alu -10 139 3 8 1411 225 282 12 25 chr3 108376277 108376289 -51223494 - ID_B1 SINE B4 -1 223 213 8 1411 789 153 0 112 chr3 108376289 108376458 -51223325 - B1_Mur4 SINE Alu 0 150 1 8 1411 225 282 12 25 chr3 108376458 108376525 -51223258 - ID_B1 SINE B4 -12 212 145 8 1411 230 286 105 23 chr3 108376982 108377068 -51222715 + ID_B1 SINE B4 107 199 -25 8 1411 270 148 23 119 chr3 108377391 108377478 -51222305 - PB1 SINE Alu 0 149 54 8 1411 365 220 0 125 chr3 108377469 108377573 -51222210 - RSINE1 SINE B4 -69 96 6 8 1411 387 0 0 0 chr3 108377578 108377621 -51222162 + (TTA)n Simple_repeat Simple_repeat 1 43 0 8 1411 672 85 50 17 chr3 108377621 108377741 -51222042 - Lx9 LINE L1 -30 7614 7491 8 1411 447 19 0 0 chr3 108377741 108377793 -51221990 + (TC)n Simple_repeat Simple_repeat 1 52 0 8 1411 705 208 18 6 chr3 108377821 108377990 -51221793 - Lx9 LINE L1 -223 7421 7251 8 1411 890 219 97 0 chr3 108378005 108378201 -51221582 - ID_B1 SINE B4 -8 216 2 8 1411 662 257 131 118 chr3 108378361 108378974 -51220809 + L1MC4a LINE L1 7262 7882 0 8 1411 210 150 0 0 chr3 108379138 108379178 -51220605 + (TTTG)n Simple_repeat Simple_repeat 1 40 0 8 1411 980 62 12 100 chr3 108379178 108379338 -51220445 - B1_Mus1 SINE Alu -1 147 2 8 1411 455 302 0 0 chr3 108379371 108379477 -51220306 + PB1D10 SINE Alu 2 107 -10 8 1411 1035 97 7 0 chr3 108379537 108379691 -51220092 + B2_Mm1a SINE B2 1 155 -38 8 1411 393 124 276 26 chr3 108379719 108379835 -51219948 + B2_Mm2 SINE B2 47 191 -4 8 1411 789 158 21 14 chr3 108379916 108380057 -51219726 + B1_Mur1 SINE Alu 1 142 -7 8 1411 1349 76 54 0 chr3 108380066 108380251 -51219532 + B2_Mm2 SINE B2 1 195 0 8 1411 600 199 29 117 chr3 108380259 108380393 -51219390 - RSINE1 SINE B4 -1 164 44 8 1411 225 0 0 0 chr3 108380393 108380418 -51219365 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 8 1411 1201 29 0 0 chr3 108380418 108380556 -51219227 - B1_Mus1 SINE Alu -10 138 1 8 1411 600 199 29 117 chr3 108380556 108380591 -51219192 - RSINE1 SINE B4 -122 43 10 8 1411 24 0 0 0 chr3 108380610 108380634 -51219149 + AT_rich Low_complexity Low_complexity 1 24 0 8 1411 918 136 0 48 chr3 108380634 108380781 -51219002 + B1_Mur4 SINE Alu 3 142 -8 8 1411 287 283 43 11 chr3 108380827 108380920 -51218863 - B1_Mus2 SINE Alu -51 96 1 8 1411 800 262 9 9 chr3 108381357 108381573 -51218210 - B3 SINE B2 0 216 1 8 1411 432 0 0 0 chr3 108381746 108381794 -51217989 + (TG)n Simple_repeat Simple_repeat 1 48 0 8 1411 628 134 0 0 chr3 108381794 108381891 -51217892 - B3 SINE B2 -87 129 33 8 1411 243 177 62 46 chr3 108382147 108382212 -51217571 + ID4_ SINE ID 12 77 -6 8 1411 564 255 12 82 chr3 108382176 108382347 -51217436 + ID_B1 SINE B4 43 201 -23 8 1411 413 218 11 0 chr3 108382420 108382507 -51217276 + PB1D10 SINE Alu 30 117 0 8 1411 335 287 82 18 chr3 108382511 108382621 -51217162 + PB1D7 SINE Alu 1 117 -3 8 1411 397 204 127 64 chr3 108382617 108382727 -51217056 + B1_Mur2 SINE Alu 33 149 0 8 1411 1266 34 0 0 chr3 108383162 108383310 -51216473 + B1_Mus1 SINE Alu 1 148 0 8 1411 207 0 0 0 chr3 108383320 108383343 -51216440 + (GA)n Simple_repeat Simple_repeat 2 24 0 8 1411 648 253 20 40 chr3 108383354 108383367 -51216416 - B1_Mur1 SINE Alu 0 149 137 8 1411 210 37 0 0 chr3 108383367 108383394 -51216389 + (TCTG)n Simple_repeat Simple_repeat 3 29 0 8 1411 648 253 20 40 chr3 108383394 108383532 -51216251 - B1_Mur1 SINE Alu -13 136 1 8 1411 1277 92 38 5 chr3 108383623 108383808 -51215975 + B2_Mm2 SINE B2 2 192 -3 8 1411 998 117 0 20 chr3 108385020 108385168 -51214615 - B1_Mur3 SINE Alu -4 145 1 8 1411 1075 166 23 51 chr3 108385357 108385573 -51214210 + B3 SINE B2 2 211 -5 8 1411 375 350 6 75 chr3 108385633 108385806 -51213977 + RSINE1 SINE B4 5 165 0 8 1411 24 32 0 0 chr3 108385814 108385845 -51213938 + AT_rich Low_complexity Low_complexity 1 31 0 8 1411 712 192 16 0 chr3 108385895 108386020 -51213763 - B1_Mur2 SINE Alu -10 139 13 8 1411 255 125 0 0 chr3 108386140 108386180 -51213603 + (A)n Simple_repeat Simple_repeat 1 40 0 8 1411 238 47 22 44 chr3 108386180 108386225 -51213558 + (TTTTTG)n Simple_repeat Simple_repeat 2 45 0 8 1411 1176 62 7 0 chr3 108386225 108386370 -51213413 - B1_Mm SINE Alu 0 147 2 8 1411 268 301 0 67 chr3 108386371 108386460 -51213323 - MLT1K LTR MaLR -61 534 452 8 1411 1446 177 64 118 chr3 108386557 108386948 -51212835 + ORR1D1 LTR MaLR 1 370 -4 8 1411 312 230 229 17 chr3 108387056 108387116 -51212667 + ID_B1 SINE B4 17 207 -17 8 1411 314 230 44 44 chr3 108387116 108387207 -51212576 + PB1D7 SINE Alu 13 103 -17 8 1411 234 226 0 168 chr3 108387336 108387437 -51212346 - PB1D10 SINE Alu -13 104 21 8 1411 439 240 55 23 chr3 108387517 108387645 -51212138 - MER3 DNA MER1_type -57 152 21 8 1411 1242 121 258 12 chr3 108387724 108387976 -51211807 + ORR1A4 LTR MaLR 1 314 -15 8 1411 369 0 0 0 chr3 108387985 108388026 -51211757 + (CA)n Simple_repeat Simple_repeat 2 42 0 9 1411 23 0 0 0 chr3 108388495 108388518 -51211265 + AT_rich Low_complexity Low_complexity 1 23 0 9 1411 22 35 0 0 chr3 108388604 108388633 -51211150 + AT_rich Low_complexity Low_complexity 1 29 0 9 1411 711 270 0 35 chr3 108388730 108388899 -51210884 - RSINE1 SINE B4 0 165 3 9 1411 26 74 0 0 chr3 108388916 108388970 -51210813 + AT_rich Low_complexity Low_complexity 1 54 0 9 1411 556 213 49 0 chr3 108389123 108389245 -51210538 - ID_B1 SINE B4 -14 210 83 9 1411 247 310 0 44 chr3 108389570 108389661 -51210122 + L2b LINE L2 3287 3373 -2 9 1411 620 150 134 52 chr3 108390099 108390233 -51209550 - B1_Mus1 SINE Alu 0 148 4 9 1411 1436 163 4 40 chr3 108390813 108391088 -51208695 - RMER10B LTR ERVL -133 265 1 9 1411 1995 175 48 24 chr3 108391572 108391874 -51207909 + ORR1C2 LTR MaLR 1 312 -72 9 1411 1557 59 32 0 chr3 108391874 108392060 -51207723 - B2_Mm2 SINE B2 -2 193 2 9 1411 1995 175 48 24 chr3 108392060 108392132 -51207651 + ORR1C2 LTR MaLR 313 384 0 9 1411 324 188 0 0 chr3 108392265 108392329 -51207454 + CT-rich Low_complexity Low_complexity 2 65 0 9 1411 380 320 122 23 chr3 108392329 108392591 -51207192 - B4A SINE B4 -4 288 1 9 1411 373 250 109 50 chr3 108392597 108392698 -51207085 - PB1D10 SINE Alu -8 109 3 9 1411 349 222 74 0 chr3 108392811 108392892 -51206891 - B1_Mur1 SINE Alu -32 117 31 9 1411 1671 190 26 52 chr3 108393215 108393435 -51206348 - ORR1D1 LTR MaLR 0 374 160 9 1411 1385 101 37 11 chr3 108393435 108393625 -51206158 + B2_Mm2 SINE B2 1 195 0 9 1411 1671 190 26 52 chr3 108393625 108393700 -51206083 - ORR1D1 LTR MaLR -215 159 91 9 1411 875 149 233 42 chr3 108393700 108393889 -51205894 - URR1A DNA MER1_type 0 226 2 9 1411 1671 190 26 52 chr3 108393889 108393976 -51205807 - ORR1D1 LTR MaLR -284 90 1 9 1411 207 0 0 0 chr3 108395330 108395353 -51204430 + (T)n Simple_repeat Simple_repeat 1 23 0 9 1411 243 0 0 0 chr3 108395831 108395858 -51203925 + (TG)n Simple_repeat Simple_repeat 1 27 0 9 1411 288 0 0 0 chr3 108395858 108395889 -51203894 + (GA)n Simple_repeat Simple_repeat 1 32 0 9 1411 224 324 55 18 chr3 108396156 108396266 -51203517 + MIR SINE MIR 37 150 -112 9 1412 527 181 18 37 chr3 108397201 108397310 -51202473 - B1_Mus1 SINE Alu -41 107 1 9 1412 180 0 0 0 chr3 108397344 108397364 -51202419 + (TTTTA)n Simple_repeat Simple_repeat 5 24 0 9 1412 343 154 9 0 chr3 108397377 108397441 -51202342 - B2_Mm2 SINE B2 -102 114 47 9 1412 1480 57 11 0 chr3 108397499 108397675 -51202108 - B2_Mm1t SINE B2 -14 179 2 9 1412 1436 153 18 0 chr3 108397746 108397968 -51201815 + URR1A DNA MER1_type 1 226 0 9 1412 1231 191 5 32 chr3 108398188 108398405 -51201378 + B3 SINE B2 1 211 -5 9 1412 1495 54 0 75 chr3 108398442 108398643 -51201140 - B2_Mm2 SINE B2 -8 187 2 9 1412 22 0 0 0 chr3 108398692 108398714 -51201069 + AT_rich Low_complexity Low_complexity 1 22 0 9 1412 3378 71 7 46 chr3 108398747 108399205 -51200578 - L1Md_F2 LINE L1 0 6582 6143 9 1412 456 111 0 0 chr3 108399224 108399296 -51200487 + (TG)n Simple_repeat Simple_repeat 2 73 0 9 1412 29 70 0 0 chr3 108399349 108399406 -51200377 + AT_rich Low_complexity Low_complexity 1 57 0 9 1412 627 231 154 0 chr3 108399409 108399539 -51200244 - RSINE1 SINE B4 -8 157 8 9 1412 291 28 0 0 chr3 108399561 108399597 -51200186 + (TG)n Simple_repeat Simple_repeat 2 37 0 9 1412 806 247 30 12 chr3 108399629 108399797 -51199986 - B3A SINE B2 -27 171 1 9 1412 679 228 29 0 chr3 108399871 108400007 -51199776 + ID_B1 SINE B4 80 219 -5 9 1412 556 211 10 0 chr3 108400009 108400113 -51199670 + B1F SINE Alu 1 105 -44 9 1412 203 384 96 18 chr3 108400165 108400332 -51199451 + L3 LINE CR1 3886 4065 -424 9 1412 693 241 30 59 chr3 108400552 108400755 -51199028 - B3A SINE B2 0 198 2 9 1412 356 336 9 18 chr3 108400904 108401013 -51198770 - PB1 SINE Alu -8 119 12 9 1412 2284 303 76 39 chr3 108401013 108401962 -51197821 + Lx7 LINE L1 5830 6813 -883 9 1412 345 254 94 60 chr3 108402084 108402109 -51197674 - ID_B1 SINE B4 -24 200 82 9 1412 412 233 144 0 chr3 108402109 108402199 -51197584 - B1F2 SINE Alu -46 103 1 9 1412 180 0 0 0 chr3 108402214 108402234 -51197549 + (TG)n Simple_repeat Simple_repeat 1 20 0 9 1412 288 0 0 0 chr3 108402234 108402265 -51197518 + (GA)n Simple_repeat Simple_repeat 1 32 0 9 1412 484 246 52 96 chr3 108402267 108402362 -51197421 - B1_Mur1 SINE Alu -19 130 29 9 1412 1482 70 11 5 chr3 108402362 108402549 -51197234 - B2_Mm2 SINE B2 -7 188 1 9 1412 484 246 52 96 chr3 108402549 108402588 -51197195 - B1_Mur1 SINE Alu -121 28 2 9 1412 881 236 36 10 chr3 108402751 108402944 -51196839 - B3A SINE B2 0 198 1 9 1412 1274 54 0 0 chr3 108403252 108403399 -51196384 - B1_Mus1 SINE Alu -1 147 1 9 1412 294 29 0 0 chr3 108403490 108403525 -51196258 + (TCTCCC)n Simple_repeat Simple_repeat 2 36 0 9 1412 342 0 0 0 chr3 108403525 108403563 -51196220 + (TG)n Simple_repeat Simple_repeat 2 39 0 9 1412 562 311 27 7 chr3 108403566 108403715 -51196068 - RSINE1 SINE B4 -12 153 2 9 1412 490 281 123 7 chr3 108403729 108403883 -51195900 - ID_B1 SINE B4 -27 197 26 9 1412 462 322 20 0 chr3 108404412 108404558 -51195225 - B1F1 SINE Alu 0 149 1 9 1412 1380 98 0 0 chr3 108404669 108404843 -51194940 - B2_Mm1a SINE B2 -18 175 2 9 1412 228 35 0 0 chr3 108404845 108404874 -51194909 + (TTTG)n Simple_repeat Simple_repeat 1 29 0 9 1412 717 179 14 88 chr3 108404888 108405035 -51194748 - B1_Mur3 SINE Alu -13 136 1 9 1412 615 239 19 8 chr3 108405067 108405231 -51194552 - B3 SINE B2 0 198 27 9 1412 326 212 24 24 chr3 108405769 108405851 -51193932 - B1_Mus2 SINE Alu -3 144 63 9 1412 270 0 0 0 chr3 108405870 108405900 -51193883 + (TTTA)n Simple_repeat Simple_repeat 1 30 0 9 1412 652 202 85 8 chr3 108405904 108406034 -51193749 - B1_Mus1 SINE Alu -8 140 1 9 1412 1251 84 4 166 chr3 108406406 108406635 -51193148 + B2_Mm1t SINE B2 2 193 0 9 1412 247 317 0 45 chr3 108406796 108406862 -51192921 - ID4_ SINE ID -14 69 7 9 1412 2592 115 2 23 chr3 108406882 108407275 -51192508 - ORR1B1 LTR MaLR -9 385 1 9 1412 524 282 0 9 chr3 108407282 108407393 -51192390 - PB1D10 SINE Alu -7 110 1 9 1412 300 323 81 0 chr3 108407428 108407527 -51192256 + PB1 SINE Alu 9 115 -12 9 1412 183 42 0 0 chr3 108407570 108407594 -51192189 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 9 1412 335 225 88 26 chr3 108407785 108407881 -51191902 + PB1 SINE Alu 16 111 -16 9 1412 3698 85 14 2 chr3 108408133 108408619 -51191164 - L1_Mus4 LINE L1 -8 6628 6137 9 1412 736 258 6 12 chr3 108408921 108409086 -51190697 - RSINE1 SINE B4 0 165 2 9 1412 279 159 0 192 chr3 108409130 108409208 -51190575 + B2_Mm2 SINE B2 3 65 -130 9 1412 1026 172 23 6 chr3 108409751 108409926 -51189857 + B3 SINE B2 33 210 -6 9 1412 637 212 90 8 chr3 108409928 108410061 -51189722 + B1_Mur1 SINE Alu 1 144 -5 9 1412 536 261 70 32 chr3 108410386 108410544 -51189239 - RSINE1 SINE B4 0 165 2 9 1412 309 164 16 0 chr3 108410888 108410949 -51188834 - RMER6B LTR ERVK -382 79 18 9 1412 24 0 0 0 chr3 108411112 108411136 -51188647 + AT_rich Low_complexity Low_complexity 1 24 0 9 1412 3415 188 83 48 chr3 108411228 108411718 -51188065 - Lx7 LINE L1 0 7696 7076 9 1412 1190 79 152 0 chr3 108411718 108411882 -51187901 - B2_Mm1t SINE B2 -4 189 1 9 1412 3415 171 86 25 chr3 108411882 108412214 -51187569 - Lx7 LINE L1 -621 7075 6737 9 1412 510 309 74 47 chr3 108412343 108412533 -51187250 - RMER30 DNA MER1_type -6 196 2 9 1412 23 33 0 0 chr3 108413264 108413294 -51186489 + AT_rich Low_complexity Low_complexity 1 30 0 9 1412 1053 198 49 6 chr3 108413367 108413386 -51186397 - B3 SINE B2 -25 191 173 9 1412 441 0 0 0 chr3 108413386 108413435 -51186348 + (TG)n Simple_repeat Simple_repeat 2 50 0 9 1412 1053 198 49 6 chr3 108413435 108413598 -51186185 - B3 SINE B2 -44 172 1 9 1412 412 233 106 7 chr3 108413633 108413725 -51186058 + PB1D9 SINE Alu 3 95 -52 9 1412 261 0 0 0 chr3 108413731 108413760 -51186023 + (CA)n Simple_repeat Simple_repeat 1 29 0 9 1412 1231 75 0 0 chr3 108413842 108413988 -51185795 - B1_Mus1 SINE Alu -1 147 2 9 1412 385 296 105 62 chr3 108414595 108414761 -51185022 - L1MEf LINE L1 -4779 1421 1269 9 1412 2254 151 42 16 chr3 108414761 108415145 -51184638 - ORR1B1 LTR MaLR 0 394 1 9 1412 385 296 105 62 chr3 108415145 108415284 -51184499 - L1MEf LINE L1 -4932 1268 1103 9 1412 267 312 13 0 chr3 108415338 108415415 -51184368 - ID4 SINE ID 0 83 6 9 1412 635 230 132 30 chr3 108415434 108415631 -51184152 - ID_B1 SINE B4 0 224 8 9 1412 244 324 44 0 chr3 108415690 108415758 -51184025 - ID_B1 SINE B4 -67 157 87 9 1412 422 331 46 0 chr3 108415901 108416031 -51183752 + B1F SINE Alu 6 141 -8 9 1412 1144 60 15 0 chr3 108416114 108416248 -51183535 - B1_Mus1 SINE Alu -11 137 2 9 1412 832 223 31 10 chr3 108416270 108416482 -51183301 - B3A SINE B2 0 216 7 9 1412 201 178 0 0 chr3 108416736 108416781 -51183002 + T-rich Low_complexity Low_complexity 1 45 0 9 1412 266 286 23 35 chr3 108416843 108416930 -51182853 - B3A SINE B2 0 198 113 9 1412 213 271 0 54 chr3 108416993 108417067 -51182716 + BC1_Mm scRNA scRNA 6 75 -77 9 1412 327 256 93 0 chr3 108417120 108417206 -51182577 - PB1D10 SINE Alu -21 96 3 9 1412 1548 74 16 0 chr3 108417425 108417615 -51182168 - B2_Mm2 SINE B2 -1 194 2 9 1412 629 210 42 101 chr3 108417780 108418018 -51181765 - RCHARR1 DNA MER1_type 0 974 751 9 1412 351 0 0 0 chr3 108418080 108418119 -51181664 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 1412 504 318 89 70 chr3 108418124 108418395 -51181388 - B4A SINE B4 -16 276 1 1 1412 22 35 0 0 chr3 108418400 108418429 -51181354 + AT_rich Low_complexity Low_complexity 1 29 0 1 1412 302 98 0 19 chr3 108418429 108418481 -51181302 + (TG)n Simple_repeat Simple_repeat 1 51 0 1 1412 306 0 0 0 chr3 108418481 108418514 -51181269 + (GA)n Simple_repeat Simple_repeat 1 34 0 1 1412 600 320 50 58 chr3 108418519 108418818 -51180965 - B4 SINE B4 0 292 8 1 1412 793 278 6 34 chr3 108418822 108419001 -51180782 + B3 SINE B2 32 205 -11 1 1412 317 256 33 44 chr3 108419023 108419113 -51180670 - ID_B1 SINE B4 -13 211 123 1 1412 395 0 0 163 chr3 108419158 108419373 -51180410 + (CTCTG)n Simple_repeat Simple_repeat 1 180 0 1 1412 243 0 318 0 chr3 108419328 108419460 -51180323 + (CCTG)n Simple_repeat Simple_repeat 2 175 0 1 1412 480 324 0 0 chr3 108419415 108419594 -51180189 + CT-rich Low_complexity Low_complexity 1 179 0 1 1412 262 237 69 40 chr3 108419597 108419698 -51180085 - RCHARR1 DNA MER1_type -218 756 653 9 1412 534 272 8 0 chr3 108419754 108419879 -51179904 - RSINE1 SINE B4 -37 128 3 1 1412 807 206 45 0 chr3 108419879 108420078 -51179705 - RCHARR1 DNA MER1_type -300 674 467 9 1412 564 15 0 0 chr3 108420187 108420252 -51179531 + (CA)n Simple_repeat Simple_repeat 1 65 0 1 1412 608 208 57 9 chr3 108420254 108420384 -51179399 - RSINE1 SINE B4 -21 144 6 1 1412 588 259 124 17 chr3 108420595 108420772 -51179011 + RMER30 DNA MER1_type 7 202 0 1 1412 267 267 90 34 chr3 108421032 108421121 -51178662 + PB1D10 SINE Alu 15 108 -9 1 1412 973 161 0 20 chr3 108422654 108422800 -51176983 - B1_Mur4 SINE Alu -6 144 2 1 1412 1835 225 167 19 chr3 108422886 108423358 -51176425 + Lx8 LINE L1 6572 7113 -360 1 1412 1368 263 68 22 chr3 108423542 108424093 -51175690 - L1_Mur3 LINE L1 -499 5798 5194 1 1412 1208 70 0 0 chr3 108424093 108424236 -51175547 - B1_Mus1 SINE Alu -5 143 1 1 1412 1169 297 73 35 chr3 108424236 108424395 -51175388 - L1_Mur3 LINE L1 -687 5193 5030 1 1412 748 188 98 0 chr3 108424755 108424888 -51174895 - B1_Mur1 SINE Alu -1 148 3 1 1412 1212 62 7 0 chr3 108425025 108425169 -51174614 + B1_Mus2 SINE Alu 3 147 0 1 1412 852 144 8 18 chr3 108425200 108425355 -51174428 + B1_Mur4 SINE Alu 2 144 -6 1 1412 283 271 104 57 chr3 108425225 108425417 -51174366 - YREP_Mm Unknown Unknown -1509 303 103 1 1412 221 283 119 20 chr3 108425975 108426076 -51173707 + PB1 SINE Alu 12 122 -5 1 1412 25 0 0 0 chr3 108426122 108426147 -51173636 + AT_rich Low_complexity Low_complexity 1 25 0 1 1412 21 36 0 0 chr3 108426429 108426457 -51173326 + AT_rich Low_complexity Low_complexity 1 28 0 1 1412 531 255 124 52 chr3 108426822 108426975 -51172808 - RSINE1 SINE B4 0 165 2 1 1412 629 259 123 51 chr3 108427719 108427914 -51171869 + B3 SINE B2 2 210 -6 1 1412 898 225 17 0 chr3 108428171 108428344 -51171439 - B3 SINE B2 -9 207 32 1 1412 305 324 0 0 chr3 108428343 108428411 -51171372 + RSINE1 SINE B4 89 156 -9 1 1412 932 170 0 15 chr3 108428458 108428595 -51171188 - B1_Mur4 SINE Alu -14 136 2 1 1412 536 127 36 0 chr3 108428838 108428948 -51170835 + GA-rich Low_complexity Low_complexity 2 115 0 1 1412 228 238 250 48 chr3 108429414 108429498 -51170285 - PB1D10 SINE Alu -7 110 10 1 1412 242 167 181 0 chr3 108431312 108431384 -51168399 - HAL1 LINE L1 -676 1831 1747 1 1412 1100 59 82 0 chr3 108431406 108431541 -51168242 + B1_Mm SINE Alu 2 147 0 1 1412 249 33 0 0 chr3 108431541 108431571 -51168212 + (A)n Simple_repeat Simple_repeat 1 30 0 1 1412 424 276 58 23 chr3 108431642 108431816 -51167967 - HAL1 LINE L1 -924 1583 1404 1 1412 537 189 143 45 chr3 108432736 108432869 -51166914 - B1_Mur1 SINE Alu -3 146 1 1 1412 544 290 0 37 chr3 108433212 108433348 -51166435 + RSINE1 SINE B4 2 132 -33 1 1412 1289 41 0 0 chr3 108433755 108433901 -51165882 + B1_Mm SINE Alu 2 147 0 1 1412 21 0 0 0 chr3 108433979 108434000 -51165783 + AT_rich Low_complexity Low_complexity 1 21 0 1 1412 1254 115 71 0 chr3 108434105 108434287 -51165496 - B2_Mm2 SINE B2 0 195 1 1 1412 436 188 198 0 chr3 108435171 108435331 -51164452 - B3 SINE B2 -6 210 19 1 1412 625 110 0 0 chr3 108435362 108435453 -51164330 - B2_Mm2 SINE B2 -99 96 6 1 1412 785 277 34 0 chr3 108435606 108435783 -51164000 - B3 SINE B2 -33 183 1 1 1412 230 203 40 13 chr3 108436579 108436654 -51163129 + MADE2 DNA Mariner 4 80 0 1 1412 242 282 0 101 chr3 108436727 108436806 -51162977 + ID4_ SINE ID 12 82 -1 1 1412 231 240 0 118 chr3 108436896 108436981 -51162802 + RSINE1 SINE B4 12 86 -79 1 1412 439 206 42 6 chr3 108436924 108437062 -51162721 + B3 SINE B2 28 208 -8 1 1412 868 163 43 0 chr3 108437099 108437240 -51162543 + B1_Mur3 SINE Alu 3 149 0 1 1412 255 130 0 0 chr3 108437240 108437294 -51162489 + (A)n Simple_repeat Simple_repeat 1 54 0 1 1412 1610 230 65 30 chr3 108437598 108438028 -51161755 - Lx8 LINE L1 -3 7470 7026 1 1412 845 218 73 34 chr3 108438070 108438274 -51161509 - Lx8 LINE L1 -574 6899 6688 1 1412 23 0 0 0 chr3 108438373 108438396 -51161387 + AT_rich Low_complexity Low_complexity 1 23 0 1 1412 819 235 42 38 chr3 108438434 108438646 -51161137 + B3 SINE B2 1 213 -3 1 1412 739 271 37 37 chr3 108438728 108438943 -51160840 - B3 SINE B2 0 216 2 1 1412 227 299 91 0 chr3 108439454 108439531 -51160252 + PB1 SINE Alu 2 85 -42 1 1412 266 234 0 0 chr3 108440299 108440346 -51159437 + ID4 SINE ID 2 48 -35 1 1412 210 333 22 0 chr3 108441153 108441243 -51158540 - MIRb SINE MIR -67 201 110 1 1412 306 341 12 0 chr3 108441780 108441865 -51157918 + ID SINE ID 2 87 -137 1 1412 274 264 146 0 chr3 108442080 108442190 -51157593 - RSINE1 SINE B4 -29 136 11 1 1412 265 286 111 43 chr3 108442261 108442378 -51157405 - RSINE1 SINE B4 -38 127 3 1 1412 1005 185 80 5 chr3 108442413 108442614 -51157169 - B3 SINE B2 0 216 1 1 1412 1211 82 0 0 chr3 108442969 108443115 -51156668 - B1_Mus1 SINE Alu -1 147 2 1 1412 255 288 118 42 chr3 108443115 108443332 -51156451 - L1M2 LINE L1 -3521 2622 2355 1 1412 290 278 35 19 chr3 108443334 108443441 -51156342 - ORR1E LTR MaLR -209 150 24 1 1412 22 0 0 0 chr3 108443889 108443911 -51155872 + AT_rich Low_complexity Low_complexity 1 22 0 1 1412 464 271 125 76 chr3 108444025 108444249 -51155534 - B4A SINE B4 -8 284 50 1 1412 585 201 33 53 chr3 108444334 108444486 -51155297 - RSINE1 SINE B4 0 165 17 1 1412 225 0 0 0 chr3 108445205 108445230 -51154553 + (TTTA)n Simple_repeat Simple_repeat 3 27 0 1 1412 1154 44 0 0 chr3 108445230 108445366 -51154417 - B1_Mus1 SINE Alu -12 136 1 1 1412 233 355 144 17 chr3 108446543 108446890 -51152893 - L2a LINE L2 -85 3341 2951 1 1412 1081 102 0 0 chr3 108448888 108449035 -51150748 - B1_Mus2 SINE Alu 0 147 1 1 1412 420 182 78 39 chr3 108449385 108449488 -51150295 - PB1D9 SINE Alu 0 120 14 1 1412 225 0 0 0 chr3 108449498 108449523 -51150260 + (TTCA)n Simple_repeat Simple_repeat 1 25 0 1 1412 880 102 23 0 chr3 108449523 108449651 -51150132 - B1_Mus1 SINE Alu -13 135 5 1 1412 276 243 106 53 chr3 108450614 108450727 -51149056 - RLTR9A LTR ERVK -2 407 289 1 1412 365 249 178 24 chr3 108450761 108450859 -51148924 - RLTR9A LTR ERVK -173 195 84 1 1412 3339 48 2 0 chr3 108450859 108451254 -51148529 + MTA_Mm LTR MaLR 1 396 0 1 1412 365 249 178 24 chr3 108451254 108451324 -51148459 - RLTR9A LTR ERVK -285 83 1 1 1412 249 83 0 0 chr3 108451450 108451486 -51148297 + (GA)n Simple_repeat Simple_repeat 2 37 0 1 1412 269 304 14 0 chr3 108451487 108451556 -51148227 + ID4 SINE ID 4 73 -10 1 1412 291 233 26 64 chr3 108451721 108451799 -51147984 - RSINE1 SINE B4 -89 76 2 1 1412 461 207 0 0 chr3 108452279 108452361 -51147422 + B1F SINE Alu 34 115 -34 1 1412 306 273 19 39 chr3 108452361 108452382 -51147401 + ID_B1 SINE B4 115 215 -9 1 1412 1342 66 16 57 chr3 108452639 108452832 -51146951 - B2_Mm2 SINE B2 -9 186 2 1 1412 929 158 11 23 chr3 108452864 108453039 -51146744 + URR1A DNA MER1_type 54 226 0 1 1412 391 237 25 42 chr3 108453080 108453199 -51146584 + PB1D10 SINE Alu 1 117 0 1 1412 476 206 31 0 chr3 108453242 108453339 -51146444 + B3A SINE B2 1 100 -98 1 1412 1940 138 31 20 chr3 108453338 108453693 -51146090 - ORR1B2 LTR MaLR -8 359 1 1 1412 346 184 250 20 chr3 108453693 108453789 -51145994 + B3 SINE B2 92 210 -6 1 1412 972 271 88 20 chr3 108453959 108454004 -51145779 + MTE2b LTR MaLR 45 102 -277 1 1412 3093 42 42 8 chr3 108454004 108454387 -51145396 + MTA_Mm LTR MaLR 1 396 0 1 1412 972 271 88 20 chr3 108454387 108454646 -51145137 + MTE2b LTR MaLR 103 370 -9 1 1412 2590 254 114 44 chr3 108454958 108455871 -51143912 - Lx8 LINE L1 -151 7322 6346 1 1412 350 268 128 85 chr3 108455871 108456059 -51143724 + B3A SINE B2 1 196 -2 1 1412 524 236 16 8 chr3 108456070 108456198 -51143585 + B3 SINE B2 88 216 0 1 1412 997 126 17 0 chr3 108456466 108456640 -51143143 + (TTTC)n Simple_repeat Simple_repeat 2 178 0 1 1412 204 118 29 0 chr3 108456643 108456677 -51143106 + (CTTA)n Simple_repeat Simple_repeat 1 35 0 1 1412 186 43 0 0 chr3 108456773 108456796 -51142987 + (CCCCCG)n Simple_repeat Simple_repeat 6 28 0 1 1412 21 0 0 0 chr3 108457224 108457245 -51142538 + AT_rich Low_complexity Low_complexity 1 21 0 1 1412 706 65 155 39 chr3 108457427 108457544 -51142239 + B1_Mur4 SINE Alu 5 138 -12 1 1412 189 0 0 0 chr3 108457544 108457565 -51142218 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 1 1412 706 65 155 39 chr3 108457565 108457576 -51142207 + B1_Mur4 SINE Alu 139 148 -2 1 1412 180 0 0 0 chr3 108458473 108458493 -51141290 + (T)n Simple_repeat Simple_repeat 1 20 0 1 1412 1391 49 65 11 chr3 108458793 108458977 -51140806 - B2_Mm2 SINE B2 0 195 2 1 1412 1229 27 7 0 chr3 108459212 108459358 -51140425 + B1_Mus2 SINE Alu 1 147 0 1 1412 198 0 0 0 chr3 108459358 108459380 -51140403 + (A)n Simple_repeat Simple_repeat 1 22 0 1 1412 569 181 167 0 chr3 108459381 108459519 -51140264 - B3 SINE B2 -19 197 37 1 1412 1581 145 24 131 chr3 108459713 108460172 -51139611 + RMER17C LTR ERVK 1 410 0 1 1412 658 203 20 7 chr3 108460366 108460515 -51139268 - MLT1B LTR MaLR 0 390 240 1 1412 879 117 74 53 chr3 108460549 108460739 -51139044 - B2_Mm2 SINE B2 -1 194 1 1 1412 247 324 27 18 chr3 108460753 108460863 -51138920 - RMER15 LTR ERVL -43 532 422 1 1412 237 98 0 0 chr3 108461114 108461155 -51138628 + (TCTG)n Simple_repeat Simple_repeat 4 44 0 1 1412 751 147 7 56 chr3 108461155 108461299 -51138484 - B1_Mur2 SINE Alu -11 138 2 1 1412 183 319 208 0 chr3 108461779 108461923 -51137860 - MER5B DNA MER1_type -4 174 1 1 1412 601 288 79 6 chr3 108462170 108462348 -51137435 - B3A SINE B2 -3 195 5 1 1412 470 281 15 15 chr3 108462408 108462545 -51137238 + RSINE1 SINE B4 3 139 -26 1 1412 844 263 49 42 chr3 108462620 108462906 -51136877 + B4A SINE B4 5 292 0 1 1412 362 21 0 21 chr3 108462978 108463026 -51136757 + (CA)n Simple_repeat Simple_repeat 1 47 0 1 1412 284 264 14 0 chr3 108463778 108463850 -51135933 - ID SINE ID -149 75 3 1 1412 653 66 11 0 chr3 108463886 108463977 -51135806 + (TTCTC)n Simple_repeat Simple_repeat 1 92 0 1 1412 569 105 219 0 chr3 108464031 108464136 -51135647 - B2_Mm2 SINE B2 -66 129 2 1 1412 27 0 0 0 chr3 108464220 108464247 -51135536 + AT_rich Low_complexity Low_complexity 1 27 0 1 1412 210 158 0 0 chr3 108464429 108464467 -51135316 + T-rich Low_complexity Low_complexity 1 38 0 1 1412 724 129 0 25 chr3 108465004 108465123 -51134660 + MTC LTR MaLR 1 116 -305 1 1412 1130 88 0 0 chr3 108465411 108465558 -51134225 - B1_Mus1 SINE Alu 0 148 2 1 1412 211 283 0 0 chr3 108465688 108465741 -51134042 + (CATA)n Simple_repeat Simple_repeat 3 55 0 1 1412 1940 83 27 63 chr3 108465998 108466331 -51133452 - ORR1A4 LTR MaLR -8 321 1 1 1412 330 212 36 48 chr3 108466637 108466721 -51133062 + B1F1 SINE Alu 2 84 -65 1 1412 316 291 0 0 chr3 108467138 108467217 -51132566 - ID4 SINE ID -3 80 2 1 1412 1550 39 6 0 chr3 108467249 108467431 -51132352 - B2_Mm1a SINE B2 -10 183 1 1 1412 859 100 21 0 chr3 108467692 108467832 -51131951 + (TTCC)n Simple_repeat Simple_repeat 1 143 0 1 1412 1439 35 17 6 chr3 108467834 108468008 -51131775 - B2_Mm2 SINE B2 -18 177 2 1 1412 364 276 0 0 chr3 108468054 108468141 -51131642 - U6 snRNA snRNA -20 87 1 1 1412 1214 100 67 0 chr3 108468208 108468388 -51131395 + B2_Mm2 SINE B2 4 195 0 1 1412 934 202 111 0 chr3 108468389 108468587 -51131196 + ID_B1 SINE B4 5 224 0 1 1412 204 40 0 0 chr3 108468618 108468643 -51131140 + (GA)n Simple_repeat Simple_repeat 2 26 0 1 1412 232 294 57 32 chr3 108468800 108468923 -51130860 - ORR1E LTR MaLR -210 149 24 1 1412 210 260 0 0 chr3 108468947 108468997 -51130786 + B1F1 SINE Alu 3 52 -97 1 1412 2880 38 98 16 chr3 108469009 108469385 -51130398 + MTB_Mm LTR MaLR 1 407 0 1 1412 391 293 37 37 chr3 108469863 108470026 -51129757 - B4A SINE B4 -120 172 10 1 1412 779 286 120 77 chr3 108470029 108470495 -51129288 - MER82 DNA MER2_type -87 566 81 1 1412 297 247 200 0 chr3 108470702 108470787 -51128996 - PB1D10 SINE Alu -8 109 8 1 1412 515 16 0 15 chr3 108471285 108471350 -51128433 + (TG)n Simple_repeat Simple_repeat 1 64 0 1 1412 387 0 0 0 chr3 108471350 108471392 -51128391 + (GA)n Simple_repeat Simple_repeat 1 43 0 1 1412 388 269 25 25 chr3 108471400 108471522 -51128261 - RSINE1 SINE B4 -40 125 4 1 1412 28 29 0 0 chr3 108471758 108471793 -51127990 + AT_rich Low_complexity Low_complexity 1 35 0 1 1412 362 206 112 0 chr3 108472217 108472324 -51127459 - PB1D9 SINE Alu 0 120 2 1 1412 283 312 9 27 chr3 108472324 108472360 -51127423 - MT2B LTR ERVL -437 164 131 1 1412 335 259 8 82 chr3 108472673 108472795 -51126988 - MER2 DNA MER2_type -82 263 151 1 1412 733 170 22 15 chr3 108472950 108473087 -51126696 + B1_Mus1 SINE Alu 2 139 -9 1 1412 1145 95 0 0 chr3 108473206 108473353 -51126430 + B1_Mus2 SINE Alu 1 147 0 1 1412 1499 63 21 0 chr3 108473355 108473544 -51126239 + B2_Mm2 SINE B2 2 194 -1 1 1412 395 195 145 72 chr3 108473565 108473703 -51126080 + B1_Mur1 SINE Alu 2 149 0 1 1412 934 202 26 21 chr3 108474708 108474900 -51124883 - B3 SINE B2 -14 202 10 1 1412 264 140 18 0 chr3 108475062 108475119 -51124664 + Lx5 LINE L1 6993 7050 0 1 1412 1491 60 16 0 chr3 108475143 108475328 -51124455 - B2_Mm2 SINE B2 -7 188 1 1 1412 225 232 73 0 chr3 108475961 108476043 -51123740 + PB1D10 SINE Alu 1 88 -29 1 1412 23 0 0 0 chr3 108476549 108476572 -51123211 + AT_rich Low_complexity Low_complexity 1 23 0 1 1412 843 93 121 0 chr3 108476939 108477079 -51122704 + B2_Mm2 SINE B2 36 192 -3 1 1412 234 91 0 0 chr3 108477429 108477462 -51122321 + (CA)n Simple_repeat Simple_repeat 2 34 0 1 1412 3171 59 13 3 chr3 108477961 108478353 -51121430 - MTA_Mm LTR MaLR 0 396 1 1 1412 242 167 222 0 chr3 108478697 108478751 -51121032 - ID4_ SINE ID -7 76 11 1 1412 333 0 0 0 chr3 108479114 108479151 -51120632 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 1412 205 342 25 12 chr3 108479264 108479344 -51120439 + L2c LINE L2 3301 3381 -6 1 1412 238 241 104 21 chr3 108480947 108481091 -51118692 - RMER10B LTR ERVL -42 356 201 1 1412 692 102 246 0 chr3 108483117 108483235 -51116548 - B1_Mus1 SINE Alu 0 148 2 1 1412 2215 156 95 104 chr3 108483376 108483913 -51115870 + RMER16 LTR ERVK 1 532 -1 1 1412 2340 203 134 84 chr3 108484059 108484806 -51114977 + RMER13A LTR ERVK 1 784 -76 1 1412 214 123 45 90 chr3 108484807 108484896 -51114887 + (CAG)n Simple_repeat Simple_repeat 1 85 0 1 1412 525 164 66 65 chr3 108486054 108486193 -51113590 + B2_Mm2 SINE B2 23 194 -22 1 1412 261 0 0 0 chr3 108486193 108486222 -51113561 + (CAAT)n Simple_repeat Simple_repeat 1 29 0 1 1412 782 156 35 14 chr3 108486231 108486374 -51113409 + B1_Mus1 SINE Alu 1 146 -2 1 1412 222 206 0 0 chr3 108486381 108486449 -51113334 + A-rich Low_complexity Low_complexity 5 72 0 1 1412 3297 55 2 0 chr3 108486766 108487165 -51112618 + MTB LTR MaLR 1 400 0 1 1412 732 49 29 0 chr3 108487586 108487688 -51112095 - BC1_Mm scRNA scRNA -47 105 1 1 1412 309 151 0 0 chr3 108487798 108487851 -51111932 + (TTTA)n Simple_repeat Simple_repeat 4 56 0 1 1412 2170 59 65 10 chr3 108487853 108488159 -51111624 - L1_Mus3 LINE L1 -7 6631 6309 1 1412 1804 155 72 0 chr3 108488304 108488639 -51111144 + ORR1B2 LTR MaLR 1 359 -8 1 1412 782 157 15 0 chr3 108488669 108488803 -51110980 + B1_Mus1 SINE Alu 2 137 -11 1 1412 2749 93 96 0 chr3 108488868 108489285 -51110498 + Lx3C LINE L1 6518 6974 -2 1 1412 234 0 0 0 chr3 108489417 108489443 -51110340 + (A)n Simple_repeat Simple_repeat 1 26 0 1 1412 730 203 50 21 chr3 108490113 108490254 -51109529 - B1_Mur3 SINE Alu -2 147 3 1 1412 1277 59 35 70 chr3 108490266 108490467 -51109316 - B2_Mm2 SINE B2 -1 194 1 1 1412 240 232 18 0 chr3 108490723 108490779 -51109004 + ID_B1 SINE B4 117 173 -51 1 1412 216 269 50 25 chr3 108490779 108490803 -51108980 + PB1D10 SINE Alu 36 117 0 1 1412 257 258 32 0 chr3 108490901 108490963 -51108820 - L1ME2 LINE L1 -84 6080 6017 1 1412 21 0 0 0 chr3 108491168 108491189 -51108594 + AT_rich Low_complexity Low_complexity 1 21 0 1 1412 251 218 0 0 chr3 108491193 108491248 -51108535 + HAL1 LINE L1 1536 1590 -917 1 1412 356 88 18 0 chr3 108491407 108491464 -51108319 + (TG)n Simple_repeat Simple_repeat 2 59 0 1 1412 415 262 47 39 chr3 108491710 108491837 -51107946 + RSINE1 SINE B4 1 128 -37 1 1412 237 33 0 0 chr3 108491864 108491894 -51107889 + (CA)n Simple_repeat Simple_repeat 2 31 0 1 1412 236 192 58 0 chr3 108492065 108492117 -51107666 + RSINE1 SINE B4 2 56 -109 1 1412 352 195 0 58 chr3 108492200 108492287 -51107496 + RSINE1 SINE B4 84 165 0 1 1412 815 113 15 0 chr3 108492764 108492897 -51106886 + (GAAA)n Simple_repeat Simple_repeat 2 136 0 1 1412 771 167 204 0 chr3 108493431 108493593 -51106190 - B3 SINE B2 -21 195 1 1 1412 467 275 42 0 chr3 108493623 108493765 -51106018 + B1F SINE Alu 1 148 -1 1 1412 1576 120 18 18 chr3 108494118 108494390 -51105393 + IAPLTR2_Mm LTR ERVK 1 272 -203 1 1412 264 299 0 0 chr3 108494400 108494554 -51105229 + CT-rich Low_complexity Low_complexity 2 155 0 1 1412 835 102 75 34 chr3 108494556 108494780 -51105003 + IAPLTR1_Mm LTR ERVK 211 475 0 1 1412 250 29 0 0 chr3 108494794 108494829 -51104954 + IAPEz-int LTR ERVK 16 50 -1937 1 1412 3643 84 19 20 chr3 108494829 108495630 -51104153 + IAPEz-int LTR ERVK 10 662 -5819 1 1412 2669 79 0 3 chr3 108495630 108495973 -51103810 + IAPEz-int LTR ERVK 1359 1700 -4781 1 1412 6973 39 5 11 chr3 108495966 108496801 -51102982 + IAPEz-int LTR ERVK 5651 6480 -1 1 1412 714 42 11 0 chr3 108496988 108497083 -51102700 - B1_Mus2 SINE Alu 0 147 52 1 1412 189 0 0 0 chr3 108497083 108497104 -51102679 + (C)n Simple_repeat Simple_repeat 1 21 0 1 1412 336 259 231 5 chr3 108497229 108497415 -51102368 + Tigger5 DNA MER2_type 1 228 -2178 1 1412 1301 122 16 0 chr3 108497570 108497759 -51102024 + B2_Mm2 SINE B2 2 193 -2 1 1412 759 124 53 30 chr3 108497759 108497891 -51101892 - B1_Mur4 SINE Alu -13 137 2 1 1412 186 103 0 0 chr3 108498026 108498055 -51101728 + (TC)n Simple_repeat Simple_repeat 2 30 0 1 1412 1167 88 0 0 chr3 108498112 108498260 -51101523 - B1_Mus1 SINE Alu 0 148 1 1 1412 387 188 25 0 chr3 108498314 108498394 -51101389 - B3 SINE B2 -133 83 2 1 1412 575 183 43 0 chr3 108499021 108499136 -51100647 - B3 SINE B2 -83 133 14 1 1412 321 187 0 0 chr3 108499174 108499249 -51100534 + (TA)n Simple_repeat Simple_repeat 2 76 0 1 1412 310 300 11 11 chr3 108499270 108499361 -51100422 - RSINE1 SINE B4 -61 104 14 1 1412 27 0 0 0 chr3 108499805 108499832 -51099951 + AT_rich Low_complexity Low_complexity 1 27 0 1 1412 213 121 0 0 chr3 108500070 108500103 -51099680 + (CATA)n Simple_repeat Simple_repeat 1 33 0 1 1412 612 151 42 8 chr3 108500777 108500897 -51098886 + B1_Mur2 SINE Alu 24 147 -2 2 1412 913 127 243 0 chr3 108501506 108501679 -51098104 + B3 SINE B2 1 215 -1 3 1412 1012 112 18 12 chr3 108502166 108502337 -51097446 + URR1A DNA MER1_type 54 225 -1 4 1412 404 252 114 0 chr3 108502444 108502567 -51097216 - B1_Mur1 SINE Alu 0 149 13 5 1412 215 300 57 0 chr3 108503220 108503290 -51096493 + PB1D10 SINE Alu 9 82 -35 6 1412 180 0 0 0 chr3 108504426 108504446 -51095337 + (ATTG)n Simple_repeat Simple_repeat 1 20 0 7 1412 252 197 139 14 chr3 108504457 108504529 -51095254 - B1_Mur2 SINE Alu 0 149 69 8 1412 450 188 154 35 chr3 108504915 108505058 -51094725 - RSINE1 SINE B4 -4 161 2 9 1412 333 47 0 0 chr3 108506345 108506388 -51093395 + (CA)n Simple_repeat Simple_repeat 1 43 0 1 1412 396 288 180 12 chr3 108506542 108506714 -51093069 + B4A SINE B4 7 207 -85 1 1412 634 252 73 19 chr3 108507268 108507474 -51092309 - Lx8 LINE L1 -143 7330 7114 1 1412 403 234 28 9 chr3 108507516 108507624 -51092159 - PB1D7 SINE Alu 0 120 11 1 1412 219 167 0 0 chr3 108507849 108507891 -51091892 + (TA)n Simple_repeat Simple_repeat 1 42 0 1 1412 901 218 26 5 chr3 108508086 108508280 -51091503 + B3 SINE B2 3 200 -16 1 1412 240 35 0 0 chr3 108508280 108508309 -51091474 + (TGAA)n Simple_repeat Simple_repeat 3 31 0 1 1412 240 59 0 0 chr3 108508563 108508597 -51091186 + (TTTG)n Simple_repeat Simple_repeat 1 34 0 1 1412 888 35 0 0 chr3 108508597 108508711 -51091072 - B1_Mus1 SINE Alu -13 135 22 1 1412 2085 229 109 30 chr3 108508843 108509465 -51090318 + Lx6 LINE L1 6489 7451 -9 1 1412 710 219 108 43 chr3 108509489 108509747 -51090036 - B4A SINE B4 0 292 18 2 1412 228 67 0 0 chr3 108510068 108510098 -51089685 + (TAA)n Simple_repeat Simple_repeat 2 31 0 2 1412 708 261 111 34 chr3 108510328 108510625 -51089158 + MTEa LTR MaLR 37 356 -23 2 1412 380 20 0 20 chr3 108510946 108510996 -51088787 + (TG)n Simple_repeat Simple_repeat 1 49 0 2 1412 583 218 48 27 chr3 108510996 108511142 -51088641 - B3A SINE B2 -46 152 4 2 1412 240 258 107 23 chr3 108511253 108511384 -51088399 - L1MC5 LINE L1 -62 7899 7758 2 1412 560 197 76 30 chr3 108512371 108512502 -51087281 - B1F SINE Alu -1 148 12 2 1412 231 188 0 0 chr3 108512550 108512598 -51087185 + (CACG)n Simple_repeat Simple_repeat 4 51 0 2 1412 326 255 39 19 chr3 108512630 108512734 -51087049 - RSINE1 SINE B4 -52 113 8 2 1412 608 303 0 0 chr3 108512763 108512908 -51086875 + RSINE1 SINE B4 4 148 -17 2 1412 333 0 0 0 chr3 108512921 108512958 -51086825 + (CA)n Simple_repeat Simple_repeat 2 38 0 3 1412 387 0 0 0 chr3 108512958 108513000 -51086783 + (GA)n Simple_repeat Simple_repeat 2 44 0 3 1412 620 264 62 5 chr3 108513054 108513263 -51086520 + B4 SINE B4 70 290 -2 3 1412 219 114 0 0 chr3 108513282 108513317 -51086466 + (GGGA)n Simple_repeat Simple_repeat 1 35 0 3 1412 329 183 17 0 chr3 108513453 108513513 -51086270 + tRNA-Ala-GCY_ tRNA tRNA 6 66 -9 3 1412 313 254 27 0 chr3 108513513 108513538 -51086245 + ID4_ SINE ID 25 101 -51 3 1412 21 104 0 0 chr3 108515462 108515539 -51084244 + AT_rich Low_complexity Low_complexity 1 77 0 3 1412 1158 75 0 0 chr3 108516641 108516788 -51082995 + B1_Mus2 SINE Alu 1 147 0 3 1412 402 209 124 0 chr3 108516953 108517058 -51082725 - ID_B1 SINE B4 -17 207 90 3 1412 663 150 15 23 chr3 108517223 108517353 -51082430 - B1_Mur4 SINE Alu 0 150 22 3 1412 233 89 22 0 chr3 108517664 108517709 -51082074 + (CAAAA)n Simple_repeat Simple_repeat 1 46 0 4 1412 922 221 9 28 chr3 108518147 108518361 -51081422 + B3 SINE B2 5 214 -2 4 1412 400 164 14 14 chr3 108518765 108518839 -51080944 - ID4 SINE ID -9 74 1 4 1412 270 0 0 0 chr3 108518968 108518998 -51080785 + (CA)n Simple_repeat Simple_repeat 2 31 0 4 1412 561 314 6 34 chr3 108518998 108519176 -51080607 + B3A SINE B2 4 176 -22 4 1412 222 91 18 35 chr3 108520359 108520416 -51079367 + (CAAAA)n Simple_repeat Simple_repeat 5 60 0 4 1412 1447 82 0 10 chr3 108520491 108520687 -51079096 - B2_Mm2 SINE B2 -1 194 1 4 1412 2318 65 55 3 chr3 108520903 108521213 -51078570 + ORR1A3 LTR MaLR 1 326 0 4 1412 1218 239 112 104 chr3 108521283 108521663 -51078120 + MER44B DNA MER2_type 1 361 -189 4 1412 647 154 369 0 chr3 108521663 108521812 -51077971 - B3 SINE B2 -12 204 1 4 1412 1218 239 112 104 chr3 108521812 108521977 -51077806 + MER44B DNA MER2_type 362 550 0 4 1412 279 0 0 0 chr3 108522567 108522598 -51077185 + (TG)n Simple_repeat Simple_repeat 2 32 0 5 1412 384 223 361 6 chr3 108523358 108523516 -51076267 + ID_B1 SINE B4 3 216 -8 5 1412 273 250 49 12 chr3 108523609 108523690 -51076093 + PB1D10 SINE Alu 23 106 -11 5 1412 210 128 0 0 chr3 108523690 108523729 -51076054 + (TGAA)n Simple_repeat Simple_repeat 3 41 0 5 1412 225 300 0 0 chr3 108523739 108523799 -51075984 + tRNA-Ala-GCY_ tRNA tRNA 8 67 -8 5 1412 24 0 0 0 chr3 108525103 108525127 -51074656 + GC_rich Low_complexity Low_complexity 1 24 0 5 1412 564 298 21 39 chr3 108526063 108526297 -51073486 + MIRb SINE MIR 39 268 0 5 1412 207 0 0 0 chr3 108526645 108526668 -51073115 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 5 1412 750 228 0 7 chr3 108526678 108526828 -51072955 + B1_Mur2 SINE Alu 1 149 0 5 1412 394 224 50 10 chr3 108527431 108527530 -51072253 + B3 SINE B2 67 169 -47 5 1413 411 38 0 0 chr3 108527633 108527686 -51072097 + (TAAAA)n Simple_repeat Simple_repeat 2 54 0 6 1413 225 216 0 0 chr3 108527728 108527779 -51072004 + MTEb LTR MaLR 315 365 -14 6 1413 186 71 0 0 chr3 108528572 108528600 -51071183 + (T)n Simple_repeat Simple_repeat 1 28 0 6 1413 1118 111 0 32 chr3 108528881 108529068 -51070715 + ORR1D1 LTR MaLR 1 181 -193 6 1413 230 151 38 0 chr3 108529068 108529121 -51070662 + CT-rich Low_complexity Low_complexity 6 60 0 6 1413 758 148 91 24 chr3 108529121 108529325 -51070458 + ORR1D1 LTR MaLR 97 356 -18 6 1413 1015 243 29 183 chr3 108529391 108529839 -51069944 - MTE2a LTR MaLR 0 379 1 6 1413 307 93 93 0 chr3 108529848 108529902 -51069881 - ORR1B1 LTR MaLR 0 367 309 6 1413 2438 76 6 3 chr3 108529929 108530259 -51069524 - L1_Mus3 LINE L1 -3 6635 6305 6 1413 1720 91 147 38 chr3 108530259 108530578 -51069205 - ORR1B1 LTR MaLR -40 354 1 6 1413 681 214 55 0 chr3 108530583 108530728 -51069055 + MER2 DNA MER2_type 192 344 -1 6 1413 539 290 7 0 chr3 108531268 108531406 -51068377 - RSINE1 SINE B4 -26 139 1 7 1413 299 284 139 69 chr3 108531449 108531534 -51068249 - ID_B1 SINE B4 -69 155 58 7 1413 4811 165 72 4 chr3 108531534 108532378 -51067405 + RMER19B LTR ERVK 1 902 0 7 1413 299 284 139 69 chr3 108532378 108532436 -51067347 - ID SINE ID -167 57 2 7 1413 21 0 0 0 chr3 108532553 108532574 -51067209 + AT_rich Low_complexity Low_complexity 1 21 0 7 1413 435 19 0 0 chr3 108532831 108532883 -51066900 + (TCTA)n Simple_repeat Simple_repeat 1 52 0 7 1413 289 325 0 0 chr3 108533667 108533681 -51066102 - ID4_ SINE ID 0 83 45 7 1413 301 196 18 0 chr3 108533681 108533737 -51066046 - B4 SINE B4 -222 70 14 7 1413 289 325 0 0 chr3 108533737 108533750 -51066033 - ID4_ SINE ID 0 44 1 7 1413 760 229 66 0 chr3 108533767 108533933 -51065850 - ID_B1 SINE B4 -2 222 46 7 1413 344 263 158 14 chr3 108533991 108534130 -51065653 - B3A SINE B2 -38 160 2 7 1413 378 0 0 0 chr3 108534258 108534300 -51065483 + (TG)n Simple_repeat Simple_repeat 2 43 0 7 1413 270 0 0 0 chr3 108534300 108534329 -51065454 + (TA)n Simple_repeat Simple_repeat 1 30 0 8 1413 442 290 56 33 chr3 108534393 108534607 -51065176 - L1ME1 LINE L1 -136 6043 5825 8 1413 859 289 90 52 chr3 108534813 108535258 -51064525 + MLT1D LTR MaLR 16 477 -28 8 1413 1220 254 85 23 chr3 108535587 108535941 -51063842 - MTEa LTR MaLR -3 376 1 8 1413 1666 93 19 11 chr3 108535946 108536206 -51063577 + Lx2A LINE L1 6744 7005 -3 8 1413 1163 51 0 0 chr3 108537092 108537230 -51062553 + B1_Mus1 SINE Alu 1 138 -10 8 1413 266 0 0 29 chr3 108537230 108537265 -51062518 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 8 1413 263 266 37 25 chr3 108537308 108537389 -51062394 - ID4 SINE ID 0 83 2 8 1413 455 289 25 50 chr3 108537445 108537605 -51062178 - RSINE1 SINE B4 -5 160 5 8 1413 661 156 0 76 chr3 108538433 108538565 -51061218 + B1_Mus1 SINE Alu 2 123 -25 8 1413 864 77 0 0 chr3 108538565 108538682 -51061101 + (GA)n Simple_repeat Simple_repeat 2 118 0 9 1413 195 129 0 0 chr3 108538689 108538720 -51061063 + (GAGAA)n Simple_repeat Simple_repeat 4 34 0 9 1413 2879 155 16 16 chr3 108538734 108539239 -51060544 + RLTR16 LTR ERVK 1 505 0 9 1413 315 0 0 0 chr3 108539644 108539679 -51060104 + (TC)n Simple_repeat Simple_repeat 1 35 0 9 1413 803 202 61 41 chr3 108539803 108539999 -51059784 + B3 SINE B2 2 201 -15 9 1413 1052 202 33 24 chr3 108540037 108540250 -51059533 + B3 SINE B2 1 215 -1 9 1413 892 147 27 20 chr3 108540282 108540428 -51059355 + B1_Mur2 SINE Alu 2 148 -1 9 1413 448 230 360 0 chr3 108540528 108540689 -51059094 + ID_B1 SINE B4 2 220 -4 9 1413 255 271 33 66 chr3 108541248 108541339 -51058444 - B1F2 SINE Alu -48 101 14 9 1413 413 295 282 14 chr3 108541522 108541742 -51058041 + B4 SINE B4 3 281 -11 9 1413 370 287 21 35 chr3 108543213 108543354 -51056429 + ID_B1 SINE B4 77 215 -9 1 1413 358 316 70 0 chr3 108543367 108543481 -51056302 + ID_B1 SINE B4 16 137 -87 1 1413 1203 225 7 5 chr3 108543481 108543800 -51055983 + MTD LTR MaLR 1 411 -8 1 1413 1948 217 79 52 chr3 108543804 108544422 -51055361 + MTD-int LTR MaLR 1 635 -623 1 1413 420 231 25 273 chr3 108544422 108544541 -51055242 + MTD-int LTR MaLR 879 987 -271 1 1413 749 148 90 0 chr3 108544541 108544663 -51055120 + B1_Mus1 SINE Alu 1 133 -15 1 1413 420 231 25 273 chr3 108544663 108544906 -51054877 + MTD-int LTR MaLR 988 1151 -107 1 1413 5433 58 9 1 chr3 108544909 108545594 -51054189 - L1_Mus3 LINE L1 0 6638 5949 1 1413 5438 89 21 7 chr3 108545594 108546481 -51053302 + L1_Mus3 LINE L1 5064 5957 -681 1 1413 367 207 107 4 chr3 108546481 108546593 -51053190 + MTD-int LTR MaLR 1148 1258 0 1 1413 1721 190 18 6 chr3 108546601 108546939 -51052844 + MTD LTR MaLR 9 350 -69 1 1413 279 0 0 0 chr3 108547493 108547524 -51052259 + (TC)n Simple_repeat Simple_repeat 2 32 0 1 1413 567 0 0 0 chr3 108547591 108547654 -51052129 + (TG)n Simple_repeat Simple_repeat 1 63 0 1 1413 350 296 136 36 chr3 108547664 108547804 -51051979 - RSINE1 SINE B4 -8 157 4 1 1413 525 38 25 12 chr3 108547819 108547900 -51051883 + (TCTA)n Simple_repeat Simple_repeat 4 85 0 1 1413 413 154 76 13 chr3 108547902 108547981 -51051802 - B1_Mur1 SINE Alu -26 123 40 1 1413 180 316 0 0 chr3 108548018 108548094 -51051689 + C-rich Low_complexity Low_complexity 27 102 0 1 1413 447 252 35 9 chr3 108548289 108548405 -51051378 + PB1 SINE Alu 9 127 0 1 1413 932 109 0 0 chr3 108549347 108549494 -51050289 - URR1A DNA MER1_type -1 225 79 1 1413 10116 77 71 6 chr3 108549568 108551634 -51048149 + L1VL4 LINE L1 42 2268 -1291 1 1413 7732 82 15 14 chr3 108551624 108552884 -51046899 + L1_Mus4 LINE L1 5369 6630 -6 1 1413 1094 20 34 0 chr3 108552918 108553066 -51046717 + (GAAA)n Simple_repeat Simple_repeat 3 155 0 1 1413 388 192 41 0 chr3 108553112 108553185 -51046598 + L1MA6 LINE L1 5874 5949 -351 1 1413 1019 273 57 4 chr3 108553191 108553456 -51046327 + B4A SINE B4 8 286 -6 1 1413 285 29 0 0 chr3 108553511 108553545 -51046238 + (CA)n Simple_repeat Simple_repeat 1 34 0 1 1413 785 215 106 58 chr3 108553545 108553789 -51045994 + L1MA6 LINE L1 5941 6210 -90 1 1413 588 256 15 8 chr3 108553789 108553923 -51045860 + B1_Mur1 SINE Alu 2 136 -13 1 1413 785 201 108 57 chr3 108553923 108554016 -51045767 + L1MA6 LINE L1 6211 6300 0 1 1413 1703 26 0 0 chr3 108555845 108556037 -51043746 - B2_Mm1a SINE B2 -1 192 1 1 1413 735 185 7 46 chr3 108556054 108556207 -51043576 - B1_Mur1 SINE Alu 0 149 3 1 1413 27 0 0 0 chr3 108556238 108556265 -51043518 + AT_rich Low_complexity Low_complexity 1 27 0 1 1413 1582 52 0 20 chr3 108556365 108556562 -51043221 - B2_Mm1a SINE B2 0 193 1 1 1413 1087 192 58 10 chr3 108556586 108556791 -51042992 - B3 SINE B2 0 216 2 1 1413 393 250 109 0 chr3 108556902 108556994 -51042789 - PB1D10 SINE Alu -2 115 14 1 1413 217 317 96 12 chr3 108556926 108557009 -51042774 - B4A SINE B4 -118 174 85 1 1413 584 273 73 17 chr3 108557169 108557436 -51042347 - L1MA4A LINE L1 -281 6019 5744 1 1413 1634 126 221 0 chr3 108557439 108557733 -51042050 - ORR1B2 LTR MaLR -8 359 1 1 1413 277 211 2 2 chr3 108557734 108557796 -51041987 - L1MA4A LINE L1 -408 5748 5687 1 1413 219 69 0 0 chr3 108558640 108558669 -51041114 + (CACCC)n Simple_repeat Simple_repeat 3 31 0 1 1413 522 139 0 0 chr3 108559566 108559652 -51040131 + (T)n Simple_repeat Simple_repeat 1 86 0 1 1413 438 180 0 0 chr3 108559839 108559939 -51039844 + GA-rich Low_complexity Low_complexity 1 100 0 1 1413 522 254 25 17 chr3 108559939 108560059 -51039724 - RSINE1 SINE B4 -43 122 2 1 1413 180 300 117 0 chr3 108561004 108561064 -51038719 - L2b LINE L2 -1 3374 3308 1 1413 257 366 15 22 chr3 108561956 108562090 -51037693 - LTR33 LTR ERVL -350 165 33 1 1413 441 221 0 11 chr3 108562112 108562199 -51037584 - B1_Mur3 SINE Alu -61 88 3 1 1413 301 311 11 32 chr3 108562119 108562212 -51037571 - B4A SINE B4 -125 167 77 1 1413 275 279 25 12 chr3 108562257 108562337 -51037446 + Tigger5 DNA MER2_type 1 81 -2325 1 1413 776 287 30 20 chr3 108563232 108563431 -51036352 + ID_B1 SINE B4 22 222 -2 1 1413 472 290 99 53 chr3 108563427 108563648 -51036135 + ID_B1 SINE B4 80 292 0 1 1413 247 232 25 127 chr3 108563962 108564000 -51035783 - ID4_ SINE ID -11 72 40 1 1413 1072 229 141 42 chr3 108564000 108564333 -51035450 + ORR1D2 LTR MaLR 2 367 -3 1 1413 247 232 25 127 chr3 108564333 108564373 -51035410 - ID4_ SINE ID -44 39 2 1 1413 925 124 80 0 chr3 108564421 108564558 -51035225 - B1_Mus1 SINE Alu 0 148 1 1 1413 258 105 0 0 chr3 108564579 108564617 -51035166 + (TG)n Simple_repeat Simple_repeat 1 38 0 1 1413 324 303 34 0 chr3 108564629 108564718 -51035065 - RSINE1 SINE B4 0 165 74 1 1413 332 231 109 92 chr3 108564785 108564904 -51034879 - B4A SINE B4 -170 122 2 1 1413 459 267 41 49 chr3 108565243 108565365 -51034418 + RSINE1 SINE B4 45 165 0 1 1413 267 31 0 0 chr3 108565372 108565404 -51034379 + (ATGGTG)n Simple_repeat Simple_repeat 6 37 0 1 1413 644 182 80 99 chr3 108566167 108566368 -51033415 - B3A SINE B2 -1 197 1 1 1413 448 226 191 16 chr3 108566571 108566697 -51033086 - B1F SINE Alu -1 148 1 1 1413 752 309 16 0 chr3 108567570 108567761 -51032022 + MIR SINE MIR 29 222 -40 1 1413 213 39 0 0 chr3 108568449 108568475 -51031308 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 1 1413 321 315 102 8 chr3 108568589 108568717 -51031066 + B1_Mur2 SINE Alu 2 141 -8 1 1413 424 176 10 10 chr3 108568881 108568984 -51030799 + CT-rich Low_complexity Low_complexity 2 104 0 1 1413 180 0 0 0 chr3 108568998 108569018 -51030765 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 1 1413 445 254 23 62 chr3 108569220 108569350 -51030433 - MER5A1 DNA MER1_type -41 125 1 1 1413 845 165 186 6 chr3 108569397 108569580 -51030203 - MTD LTR MaLR 0 419 204 1 1413 378 0 0 0 chr3 108569584 108569626 -51030157 + (TA)n Simple_repeat Simple_repeat 2 43 0 1 1413 236 303 119 0 chr3 108569766 108569875 -51029908 - L1M5 LINE L1 -649 5475 5354 1 1413 279 0 0 0 chr3 108570831 108570862 -51028921 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1 1413 239 341 75 19 chr3 108570922 108571188 -51028595 + B4 SINE B4 1 281 -11 1 1413 306 0 0 0 chr3 108571199 108571233 -51028550 + (CA)n Simple_repeat Simple_repeat 2 35 0 1 1413 482 287 0 32 chr3 108571240 108571366 -51028417 - B4A SINE B4 -169 123 2 1 1413 227 325 96 40 chr3 108571506 108571631 -51028152 - MER5A DNA MER1_type -24 165 34 1 1413 234 247 123 0 chr3 108572064 108572137 -51027646 - ID4 SINE ID 0 83 2 1 1413 468 0 0 0 chr3 108572247 108572299 -51027484 + (CA)n Simple_repeat Simple_repeat 1 52 0 1 1413 324 0 0 0 chr3 108572905 108572941 -51026842 + (T)n Simple_repeat Simple_repeat 1 36 0 1 1413 519 105 293 17 chr3 108573041 108573157 -51026626 + B1_Mur2 SINE Alu 2 149 0 1 1413 346 267 88 10 chr3 108574339 108574441 -51025342 + PB1D7 SINE Alu 11 120 0 1 1413 351 0 0 0 chr3 108574466 108574505 -51025278 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 1413 694 289 0 0 chr3 108574587 108574743 -51025040 - RSINE1 SINE B4 -6 159 4 1 1413 433 267 165 15 chr3 108575565 108575698 -51024085 + B3A SINE B2 2 154 -44 1 1413 321 26 0 0 chr3 108575708 108575746 -51024037 + (TG)n Simple_repeat Simple_repeat 1 38 0 1 1413 308 288 0 0 chr3 108575956 108576029 -51023754 - ID4_ SINE ID -9 74 2 1 1413 265 98 55 73 chr3 108576239 108576294 -51023489 - FAM SINE Alu 0 315 262 1 1413 627 243 0 14 chr3 108576251 108576389 -51023394 - ID_B1 SINE B4 0 224 89 1 1413 831 186 43 0 chr3 108576497 108576637 -51023146 - B1_Mur2 SINE Alu -3 146 1 1 1413 700 263 62 0 chr3 108576644 108576838 -51022945 - B3 SINE B2 -10 206 1 1 1413 251 296 93 0 chr3 108576858 108576965 -51022818 - MIRb SINE MIR -43 225 102 1 1413 520 314 168 5 chr3 108576993 108577195 -51022588 - MLT1F1 LTR MaLR -23 546 312 1 1413 251 254 16 78 chr3 108577346 108577410 -51022373 - ID4 SINE ID -69 83 24 1 1413 704 208 46 0 chr3 108577453 108577583 -51022200 + B1_Mur3 SINE Alu 2 137 -12 1 1413 385 103 14 14 chr3 108577583 108577652 -51022131 + (TAGA)n Simple_repeat Simple_repeat 3 71 0 1 1413 292 183 6 61 chr3 108577673 108577776 -51022007 - MIRc SINE MIR -175 93 1 1 1413 294 328 0 0 chr3 108579064 108579131 -51020652 - tRNA-Ala-GCA tRNA tRNA -7 68 2 1 1413 237 50 100 0 chr3 108579559 108579619 -51020164 + (GGGA)n Simple_repeat Simple_repeat 1 66 0 1 1413 598 275 131 13 chr3 108579662 108579944 -51019839 - ORR1E LTR MaLR -7 372 43 1 1413 234 214 35 35 chr3 108580289 108580405 -51019378 + (TAAA)n Simple_repeat Simple_repeat 3 118 0 1 1413 315 238 85 24 chr3 108580409 108580433 -51019350 - PB1D7 SINE Alu -1 119 90 1 1413 429 20 0 0 chr3 108580433 108580483 -51019300 + (TC)n Simple_repeat Simple_repeat 1 50 0 1 1413 315 246 75 19 chr3 108580483 108580557 -51019226 - PB1D7 SINE Alu -31 89 13 1 1413 313 272 155 0 chr3 108580566 108580669 -51019114 + PB1D7 SINE Alu 2 120 0 1 1413 440 275 70 0 chr3 108580670 108580812 -51018971 + RSINE1 SINE B4 1 152 -13 1 1413 252 211 158 0 chr3 108581014 108581090 -51018693 - B1_Mur2 SINE Alu 0 149 62 1 1413 451 307 14 14 chr3 108581256 108581398 -51018385 + B1F SINE Alu 1 142 -7 1 1413 468 0 0 0 chr3 108581400 108581452 -51018331 + (CA)n Simple_repeat Simple_repeat 2 53 0 1 1413 341 307 129 0 chr3 108581998 108582099 -51017684 + B1F1 SINE Alu 2 115 -34 1 1413 414 0 0 0 chr3 108582109 108582155 -51017628 + (CAAAA)n Simple_repeat Simple_repeat 2 47 0 1 1413 325 275 76 42 chr3 108582413 108582557 -51017226 + B1F1 SINE Alu 1 149 0 1 1413 362 279 106 64 chr3 108582571 108582673 -51017110 + B3A SINE B2 47 151 -42 1 1413 252 0 0 0 chr3 108582673 108582701 -51017082 + (TC)n Simple_repeat Simple_repeat 1 28 0 1 1413 438 20 0 0 chr3 108582701 108582751 -51017032 + (CA)n Simple_repeat Simple_repeat 1 51 0 1 1413 251 279 107 69 chr3 108582751 108582785 -51016998 + B2_Mm1t SINE B2 152 189 -4 1 1413 264 271 80 17 chr3 108582795 108582923 -51016860 + MIRc SINE MIR 46 178 -98 2 1413 194 0 39 0 chr3 108583973 108583999 -51015784 + (TG)n Simple_repeat Simple_repeat 2 28 0 2 1413 22 70 0 0 chr3 108585178 108585221 -51014562 + AT_rich Low_complexity Low_complexity 1 43 0 2 1413 1681 107 86 50 chr3 108585224 108585563 -51014220 - Lx2 LINE L1 0 6997 6744 2 1413 672 252 57 38 chr3 108585888 108586045 -51013738 + RSINE1 SINE B4 1 160 -5 2 1413 1281 95 28 0 chr3 108586078 108586257 -51013526 + B2_Mm1t SINE B2 1 184 -9 2 1413 793 151 8 31 chr3 108586279 108586409 -51013374 + B1_Mur4 SINE Alu 23 149 -1 2 1413 1762 123 31 122 chr3 108586506 108586857 -51012926 - ORR1A2 LTR MaLR -8 319 1 2 1413 740 248 168 16 chr3 108587519 108587823 -51011960 + MTEa LTR MaLR 28 377 -2 2 1413 1226 205 97 7 chr3 108587823 108588132 -51011651 + MTEa-int LTR MaLR 1 337 -1243 2 1413 480 250 35 18 chr3 108588245 108588359 -51011424 - MTEa LTR MaLR -263 116 1 2 1413 1123 82 0 7 chr3 108588415 108588563 -51011220 + B1_Mus2 SINE Alu 1 147 0 2 1413 813 135 162 0 chr3 108588583 108588731 -51011052 + MTD LTR MaLR 196 367 -52 2 1413 1097 229 87 68 chr3 108588743 108589113 -51010670 - RLTR14 LTR ERV1 -5 377 1 2 1413 1034 254 38 85 chr3 108589134 108589452 -51010331 + MTEa-int LTR MaLR 1275 1577 -3 2 1413 1121 217 94 42 chr3 108589455 108589815 -51009968 + MTEa LTR MaLR 1 379 0 2 1413 786 161 86 21 chr3 108589860 108590000 -51009783 - B1_Mur3 SINE Alu 0 149 1 2 1413 267 174 47 103 chr3 108590158 108590258 -51009525 - ORR1E LTR MaLR 0 421 290 2 1413 198 118 0 0 chr3 108590264 108590298 -51009485 + (TA)n Simple_repeat Simple_repeat 2 35 0 2 1413 207 0 0 0 chr3 108590322 108590345 -51009438 + (TG)n Simple_repeat Simple_repeat 2 24 0 2 1413 1326 176 69 125 chr3 108590346 108590665 -51009118 - MT2A LTR ERVL -231 302 2 2 1413 508 258 18 48 chr3 108590757 108590924 -51008859 - RSINE1 SINE B4 -2 163 2 2 1413 334 335 61 18 chr3 108591196 108591360 -51008423 + B4 SINE B4 43 213 -79 2 1413 534 241 13 54 chr3 108591237 108591386 -51008397 + B1_Mur1 SINE Alu 5 147 -2 2 1413 531 326 32 118 chr3 108591843 108592191 -51007592 - ORR1E LTR MaLR -41 318 1 2 1413 307 259 141 0 chr3 108592366 108592451 -51007332 + RSINE1 SINE B4 28 124 -41 2 1413 959 232 50 0 chr3 108592526 108592724 -51007059 + B3 SINE B2 4 211 -5 2 1413 249 261 70 139 chr3 108592779 108592908 -51006875 - Charlie24 DNA MER1_type -5 2445 2336 2 1413 908 206 51 51 chr3 108592911 108593126 -51006657 + B3 SINE B2 2 216 0 2 1413 1366 77 60 0 chr3 108593167 108593188 -51006595 - B2_Mm1a SINE B2 0 193 162 2 1413 219 69 0 0 chr3 108593188 108593217 -51006566 + (TTTA)n Simple_repeat Simple_repeat 3 31 0 2 1413 1366 77 60 0 chr3 108593217 108593377 -51006406 - B2_Mm1a SINE B2 -32 161 2 2 1413 234 0 0 0 chr3 108593493 108593519 -51006264 + (T)n Simple_repeat Simple_repeat 1 26 0 2 1413 519 242 169 6 chr3 108593788 108593954 -51005829 - B2_Mm2 SINE B2 -2 193 1 2 1413 1161 191 252 124 chr3 108594517 108594994 -51004789 + MT2B LTR ERVL 2 553 -48 2 1413 798 109 0 0 chr3 108594994 108595113 -51004670 + (TCTA)n Simple_repeat Simple_repeat 3 121 0 2 1413 1161 191 252 124 chr3 108595113 108595167 -51004616 + MT2B LTR ERVL 554 601 0 2 1413 297 222 97 0 chr3 108595228 108595300 -51004483 + ID4 SINE ID 4 82 -1 2 1413 2681 106 20 15 chr3 108595508 108595900 -51003883 + ORR1B1 LTR MaLR 1 394 0 2 1413 279 79 0 0 chr3 108596046 108596084 -51003699 + (GAAAA)n Simple_repeat Simple_repeat 3 40 0 2 1413 469 282 42 60 chr3 108597204 108597370 -51002413 - RSINE1 SINE B4 0 165 3 2 1413 29 0 0 0 chr3 108598185 108598214 -51001569 + AT_rich Low_complexity Low_complexity 1 29 0 2 1413 848 187 110 0 chr3 108598215 108598397 -51001386 - B3 SINE B2 -3 213 12 2 1413 315 331 73 43 chr3 108598419 108598583 -51001200 + L1MEb LINE L1 369 537 -5533 2 1413 231 185 130 0 chr3 108598588 108598642 -51001141 + B3A SINE B2 2 62 -136 2 1413 728 122 17 42 chr3 108598736 108598856 -51000927 + B1_Mus2 SINE Alu 31 147 0 2 1413 589 46 0 44 chr3 108599264 108599355 -51000428 + (GGGGA)n Simple_repeat Simple_repeat 5 91 0 2 1413 493 267 19 0 chr3 108599560 108599665 -51000118 + RSINE1 SINE B4 55 161 -4 2 1413 265 200 40 0 chr3 108599953 108600028 -50999755 + A-rich Low_complexity Low_complexity 3 80 0 2 1413 710 209 50 65 chr3 108600530 108600730 -50999053 + B3A SINE B2 2 198 0 2 1413 1324 82 60 0 chr3 108601383 108601567 -50998216 + B2_Mm2 SINE B2 1 195 0 2 1413 246 62 0 0 chr3 108601907 108601939 -50997844 + (TTCA)n Simple_repeat Simple_repeat 4 35 0 2 1413 639 221 198 6 chr3 108602548 108602730 -50997053 + ID_B1 SINE B4 2 218 -6 2 1413 278 123 0 30 chr3 108602894 108602961 -50996822 + (CAGA)n Simple_repeat Simple_repeat 2 66 0 2 1413 460 198 31 10 chr3 108603306 108603403 -50996380 + RSINE1 SINE B4 2 100 -65 2 1413 665 323 82 3 chr3 108603986 108604278 -50995505 + MER33 DNA MER1_type 1 315 -9 2 1413 246 143 0 0 chr3 108604310 108604359 -50995424 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 2 1413 1038 196 37 0 chr3 108605190 108605379 -50994404 - B3 SINE B2 -20 196 1 2 1413 1462 63 16 11 chr3 108605456 108605647 -50994136 + B2_Mm2 SINE B2 1 192 -3 2 1413 409 278 31 8 chr3 108605883 108606010 -50993773 + B1F1 SINE Alu 2 131 -18 2 1413 186 191 0 0 chr3 108606027 108606069 -50993714 + (TGGA)n Simple_repeat Simple_repeat 3 44 0 2 1413 885 126 0 0 chr3 108607646 108607821 -50991962 + (CA)n Simple_repeat Simple_repeat 1 175 0 2 1413 284 214 112 37 chr3 108608484 108608591 -50991192 + B1F SINE Alu 34 148 -1 2 1413 612 167 29 0 chr3 108609340 108609442 -50990341 + B1_Mur1 SINE Alu 29 133 -16 2 1413 348 338 140 48 chr3 108609508 108610071 -50989712 - L2 LINE L2 -470 2949 2335 2 1413 302 259 75 137 chr3 108610193 108610317 -50989466 + RSINE1 SINE B4 15 137 -28 2 1413 188 34 0 33 chr3 108610317 108610347 -50989436 + (CA)n Simple_repeat Simple_repeat 2 30 0 2 1413 302 259 75 137 chr3 108610347 108610383 -50989400 + RSINE1 SINE B4 138 165 0 2 1413 212 231 0 13 chr3 108610423 108610502 -50989281 + (CA)n Simple_repeat Simple_repeat 2 79 0 2 1413 461 184 9 0 chr3 108610537 108610646 -50989137 + (CA)n Simple_repeat Simple_repeat 2 111 0 2 1413 480 18 0 0 chr3 108610801 108610858 -50988925 + (CA)n Simple_repeat Simple_repeat 1 57 0 2 1413 228 35 0 0 chr3 108610924 108610953 -50988830 + (CA)n Simple_repeat Simple_repeat 1 29 0 2 1413 315 0 0 0 chr3 108611023 108611058 -50988725 + (CA)n Simple_repeat Simple_repeat 1 35 0 2 1413 237 33 0 0 chr3 108611109 108611139 -50988644 + (TC)n Simple_repeat Simple_repeat 1 30 0 2 1413 333 0 0 0 chr3 108611139 108611175 -50988608 + (CA)n Simple_repeat Simple_repeat 1 37 0 2 1413 445 206 78 0 chr3 108611927 108612029 -50987754 - PB1 SINE Alu -17 110 1 2 1413 231 303 25 42 chr3 108612098 108612209 -50987574 - PB1D10 SINE Alu -36 113 2 2 1413 513 88 0 0 chr3 108612280 108612360 -50987423 + (TG)n Simple_repeat Simple_repeat 2 81 0 2 1413 329 269 25 107 chr3 108613243 108613364 -50986419 - PB1D10 SINE Alu -1 116 6 2 1413 269 295 103 15 chr3 108613496 108613665 -50986118 - MIRb SINE MIR -65 203 6 2 1413 296 271 36 45 chr3 108613908 108614020 -50985763 - B1F1 SINE Alu -38 111 1 2 1413 196 351 90 39 chr3 108614195 108614373 -50985410 + MIR SINE MIR 4 190 -72 2 1413 410 314 61 24 chr3 108615388 108615600 -50984183 - MIRb SINE MIR -14 254 35 2 1413 284 239 74 74 chr3 108616258 108616353 -50983430 - L1M5 LINE L1 -614 5626 5532 2 1413 512 249 99 78 chr3 108616426 108616618 -50983165 + B3A SINE B2 3 198 0 2 1413 1338 72 72 0 chr3 108616789 108616970 -50982813 - B2_Mm2 SINE B2 -1 194 1 2 1413 964 58 0 28 chr3 108617040 108617181 -50982602 + B1_Mur4 SINE Alu 14 150 0 2 1413 185 35 69 0 chr3 108617181 108617210 -50982573 + (TAAAA)n Simple_repeat Simple_repeat 4 34 0 2 1413 21 57 0 0 chr3 108617257 108617292 -50982491 + AT_rich Low_complexity Low_complexity 1 35 0 2 1413 360 94 0 0 chr3 108617345 108617398 -50982385 + (TG)n Simple_repeat Simple_repeat 1 53 0 2 1413 722 227 144 61 chr3 108617407 108617670 -50982113 - B4A SINE B4 -7 285 1 2 1413 247 246 24 32 chr3 108617695 108617821 -50981962 + (TAA)n Simple_repeat Simple_repeat 1 125 0 2 1413 360 64 0 0 chr3 108618131 108618178 -50981605 + (TCTA)n Simple_repeat Simple_repeat 4 50 0 2 1413 398 364 0 44 chr3 108618203 108618338 -50981445 - RSINE1 SINE B4 -35 130 2 2 1413 248 283 118 7 chr3 108618520 108618673 -50981110 - MIR SINE MIR -46 216 47 2 1413 217 39 98 0 chr3 108618812 108618863 -50980920 + (GGGA)n Simple_repeat Simple_repeat 2 57 0 2 1413 408 205 41 22 chr3 108619621 108620624 -50979159 + CT-rich Low_complexity Low_complexity 1 1021 0 2 1413 480 260 17 40 chr3 108620644 108620870 -50978913 + CT-rich Low_complexity Low_complexity 1 220 0 2 1413 589 82 0 0 chr3 108621281 108621366 -50978417 + B1_Mur4 SINE Alu 65 149 -1 2 1413 1300 147 66 0 chr3 108621703 108621914 -50977869 + URR1B DNA MER1_type 1 225 0 2 1413 212 289 0 0 chr3 108622055 108622100 -50977683 + ID4 SINE ID 15 59 -24 2 1413 316 235 88 2 chr3 108623007 108623107 -50976676 - B1F2 SINE Alu -13 104 1 2 1413 220 197 136 0 chr3 108623892 108623958 -50975825 + MIR SINE MIR 70 144 -118 2 1413 811 206 0 0 chr3 108623964 108624100 -50975683 + B1_Mur1 SINE Alu 1 136 -13 2 1413 568 32 64 0 chr3 108624100 108624194 -50975589 + (CAGAA)n Simple_repeat Simple_repeat 1 100 0 2 1413 902 172 0 0 chr3 108624988 108625133 -50974650 - B1_Mus2 SINE Alu -2 145 1 2 1413 347 347 54 23 chr3 108625738 108625959 -50973824 - L2 LINE L2 -2535 884 657 2 1413 816 244 96 0 chr3 108626007 108626204 -50973579 + B3 SINE B2 1 216 0 2 1413 252 0 0 0 chr3 108626327 108626355 -50973428 + (CA)n Simple_repeat Simple_repeat 2 29 0 2 1413 684 207 21 28 chr3 108627443 108627587 -50972196 - B1_Mur1 SINE Alu -6 143 1 3 1413 542 225 38 15 chr3 108627782 108627913 -50971870 + B1F SINE Alu 15 148 -1 3 1413 291 203 0 0 chr3 108628030 108628099 -50971684 + (TA)n Simple_repeat Simple_repeat 1 69 0 3 1413 649 236 71 57 chr3 108628138 108628349 -50971434 + B3 SINE B2 3 216 0 3 1413 606 194 33 28 chr3 108628643 108628810 -50970973 + B3A SINE B2 2 173 -43 3 1413 29 70 0 0 chr3 108629039 108629096 -50970687 + AT_rich Low_complexity Low_complexity 1 57 0 3 1413 426 53 0 0 chr3 108629403 108629460 -50970323 + (CA)n Simple_repeat Simple_repeat 2 58 0 3 1413 459 270 65 7 chr3 108629592 108629730 -50970053 + RSINE1 SINE B4 2 147 -18 3 1413 644 260 1 17 chr3 108630938 108631088 -50968695 + B3A SINE B2 1 137 -56 3 1413 388 297 234 45 chr3 108631464 108631838 -50967945 + MER21B LTR ERV1 21 465 -398 3 1413 635 212 18 48 chr3 108632144 108632312 -50967471 + RSINE1 SINE B4 2 164 -1 3 1413 769 93 0 0 chr3 108632394 108632501 -50967282 + B2_Mm2 SINE B2 1 107 -88 3 1413 288 0 0 0 chr3 108632523 108632555 -50967228 + (CAAT)n Simple_repeat Simple_repeat 2 33 0 3 1413 377 109 0 0 chr3 108632590 108632645 -50967138 + B2_Mm2 SINE B2 47 101 -94 3 1413 337 283 123 16 chr3 108632683 108632805 -50966978 + ID_B1 SINE B4 80 214 -10 3 1413 360 204 92 0 chr3 108632897 108632995 -50966788 + B4A SINE B4 124 230 -62 3 1413 823 25 225 0 chr3 108632997 108633117 -50966666 + B1_Mus1 SINE Alu 2 148 0 3 1413 310 187 12 74 chr3 108633150 108633231 -50966552 + B4A SINE B4 216 291 -1 3 1413 314 245 90 9 chr3 108633623 108633734 -50966049 + PB1D7 SINE Alu 1 120 0 3 1413 223 254 28 69 chr3 108633791 108633863 -50965920 + ID4 SINE ID 12 80 -3 3 1413 3130 68 10 0 chr3 108635529 108635925 -50963858 - MTB LTR MaLR 0 400 1 3 1413 5886 90 3 98 chr3 108635925 108636342 -50963441 - MTB-int LTR MaLR 0 1098 698 3 1413 432 0 0 0 chr3 108636342 108636390 -50963393 + (TTTTG)n Simple_repeat Simple_repeat 3 50 0 3 1413 1128 45 0 0 chr3 108636390 108636524 -50963259 - B1_Mus2 SINE Alu -12 135 2 3 1413 5886 90 3 98 chr3 108636524 108637192 -50962591 - MTB-int LTR MaLR -401 697 116 3 1413 273 46 0 0 chr3 108637234 108637277 -50962506 - B1_Mus1 SINE Alu -103 45 2 3 1413 297 122 324 0 chr3 108637421 108637495 -50962288 + B1_Mus2 SINE Alu 29 126 -21 3 1413 233 306 0 0 chr3 108637512 108637574 -50962209 + RSINE1 SINE B4 16 77 -88 3 1413 1218 48 0 0 chr3 108637667 108637813 -50961970 - B1_Mus2 SINE Alu 0 147 2 3 1413 1210 54 0 0 chr3 108637839 108637986 -50961797 - B1_Mm SINE Alu 0 147 1 3 1413 1242 54 0 0 chr3 108638013 108638161 -50961622 + B1_Mus1 SINE Alu 1 148 0 3 1413 217 283 0 54 chr3 108638682 108638738 -50961045 + ID4_ SINE ID 17 69 -14 3 1413 321 76 30 15 chr3 108638749 108638816 -50960967 + (CA)n Simple_repeat Simple_repeat 2 69 0 3 1413 487 253 272 30 chr3 108639337 108639569 -50960214 - B4A SINE B4 0 292 5 3 1413 28 0 0 0 chr3 108639856 108639884 -50959899 + AT_rich Low_complexity Low_complexity 1 28 0 3 1413 273 213 319 6 chr3 108639934 108640091 -50959692 + B4A SINE B4 10 215 -77 3 1413 307 260 65 28 chr3 108640213 108640320 -50959463 + PB1D7 SINE Alu 10 120 0 3 1413 420 248 156 8 chr3 108640827 108640949 -50958834 - ID_B1 SINE B4 0 224 85 3 1413 259 327 0 60 chr3 108640988 108641154 -50958629 - L1MB8 LINE L1 -2 6176 6021 3 1413 781 273 48 24 chr3 108641155 108641365 -50958418 + ID_B1 SINE B4 1 215 -9 3 1413 235 246 116 58 chr3 108641365 108641503 -50958280 + B4 SINE B4 76 221 -71 3 1413 498 205 126 0 chr3 108641381 108641508 -50958275 + B1_Mur2 SINE Alu 7 149 0 3 1413 340 192 142 55 chr3 108641595 108641722 -50958061 - L1MB8 LINE L1 -215 5963 5826 3 1413 544 239 0 23 chr3 108642154 108642287 -50957496 - RSINE1 SINE B4 -34 131 2 3 1413 259 264 0 0 chr3 108643743 108643796 -50955987 - RSINE1 SINE B4 0 165 113 3 1413 535 254 57 11 chr3 108644694 108644869 -50954914 - RLTR18-int LTR ERVK -130 5231 5049 3 1413 1473 75 16 0 chr3 108645372 108645558 -50954225 - B2_Mm2 SINE B2 -5 190 2 3 1413 1275 14 7 0 chr3 108645580 108645725 -50954058 - B1_Mm SINE Alu 0 147 2 3 1413 537 298 33 42 chr3 108646185 108646399 -50953384 - RLTR4_MM-int LTR ERV1 -2487 5291 5080 3 1413 961 155 14 0 chr3 108646414 108646562 -50953221 + B1_Mur4 SINE Alu 1 150 0 3 1413 236 346 0 0 chr3 108646565 108646646 -50953137 + A-rich Low_complexity Low_complexity 1 81 0 3 1413 1528 351 65 50 chr3 108647187 108647799 -50951984 - RLTR4_MM-int LTR ERV1 -3206 4395 3786 3 1413 2883 81 65 0 chr3 108647799 108648181 -50951602 - MTB_Mm LTR MaLR 0 407 1 3 1413 1528 351 65 50 chr3 108648181 108648986 -50950797 - RLTR4_MM-int LTR ERV1 -3816 3785 2964 3 1413 2995 80 5 5 chr3 108648986 108649386 -50950397 - MTB LTR MaLR 0 400 1 3 1413 1528 351 65 50 chr3 108649386 108649685 -50950098 - RLTR4_MM-int LTR ERV1 -4638 2963 2651 3 1413 259 334 68 74 chr3 108649827 108650221 -50949562 - RLTR4_MM-int LTR ERV1 -5222 2384 1993 3 1413 201 74 0 0 chr3 108650231 108650258 -50949525 + (T)n Simple_repeat Simple_repeat 1 27 0 3 1413 3284 65 2 10 chr3 108650854 108651257 -50948526 + MTB LTR MaLR 1 400 0 3 1413 511 280 15 0 chr3 108653109 108653241 -50946542 + ID_B1 SINE B4 79 212 -12 3 1413 779 317 14 30 chr3 108654312 108654608 -50945175 - B4A SINE B4 0 292 2 3 1413 1233 229 91 103 chr3 108654999 108655586 -50944197 + RLTR26 LTR ERVK 10 614 -28 3 1413 1150 97 40 6 chr3 108655601 108655777 -50944006 + RLTR23 LTR ERV1 249 430 0 3 1413 198 103 0 0 chr3 108656586 108656615 -50943168 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 3 1413 782 187 0 7 chr3 108656622 108656762 -50943021 - B1_Mm SINE Alu 0 147 9 3 1413 798 181 20 14 chr3 108656777 108656923 -50942860 - B1_Mur3 SINE Alu -2 147 1 3 1413 716 219 14 0 chr3 108656930 108657076 -50942707 - B1_Mur1 SINE Alu 0 149 2 3 1413 1108 206 33 5 chr3 108657486 108657696 -50942087 + B3 SINE B2 1 216 0 3 1413 463 236 36 0 chr3 108657763 108657873 -50941910 - PB1D10 SINE Alu -1 116 3 3 1413 596 221 11 133 chr3 108657939 108658127 -50941656 - B3 SINE B2 -46 170 6 3 1414 396 221 19 13 chr3 108658767 108658865 -50940918 + PB1D10 SINE Alu 5 107 -40 3 1414 686 179 6 94 chr3 108660060 108660220 -50939563 + B1_Mur3 SINE Alu 4 149 0 3 1414 271 328 106 8 chr3 108660240 108660363 -50939420 - MER5A DNA MER1_type -54 135 1 3 1414 797 154 59 0 chr3 108660643 108660779 -50939004 + B1_Mur3 SINE Alu 6 149 0 3 1414 198 0 0 0 chr3 108660779 108660801 -50938982 + (A)n Simple_repeat Simple_repeat 1 22 0 3 1414 682 203 0 69 chr3 108660813 108660972 -50938811 + B1_Mur1 SINE Alu 1 148 -1 3 1414 507 303 17 0 chr3 108661347 108661522 -50938261 + MER5B DNA MER1_type 1 178 0 3 1414 207 88 0 0 chr3 108661831 108661865 -50937918 + (TAAAA)n Simple_repeat Simple_repeat 2 35 0 3 1414 189 74 0 0 chr3 108661895 108661922 -50937861 + (TTTA)n Simple_repeat Simple_repeat 4 30 0 3 1414 773 291 49 56 chr3 108661966 108662084 -50937699 - B4A SINE B4 -9 283 167 3 1414 2740 94 34 5 chr3 108662084 108662467 -50937316 + ORR1B1 LTR MaLR 1 394 0 3 1414 773 291 49 56 chr3 108662467 108662632 -50937151 - B4A SINE B4 -126 166 2 3 1414 257 294 0 14 chr3 108662684 108662753 -50937030 + PB1 SINE Alu 2 69 -58 3 1414 329 314 25 17 chr3 108663408 108663528 -50936255 + MIRc SINE MIR 118 238 -30 3 1414 197 119 73 15 chr3 108663652 108663720 -50936063 + A-rich Low_complexity Low_complexity 1 72 0 3 1414 243 0 0 0 chr3 108664168 108664195 -50935588 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 3 1414 398 108 0 71 chr3 108664222 108664292 -50935491 - B1_Mm SINE Alu -2 145 81 3 1414 482 143 102 0 chr3 108664397 108664495 -50935288 + B1_Mur3 SINE Alu 42 149 0 3 1414 628 230 0 41 chr3 108664746 108664835 -50934948 - RSINE1 SINE B4 0 165 81 3 1414 2021 157 53 90 chr3 108664835 108665268 -50934515 + MTC LTR MaLR 1 417 -4 3 1414 628 230 0 41 chr3 108665268 108665323 -50934460 - RSINE1 SINE B4 -85 80 27 3 1414 400 248 9 18 chr3 108665331 108665442 -50934341 + MTD LTR MaLR 1 110 -309 3 1414 1151 56 28 0 chr3 108665462 108665605 -50934178 - B1_Mm SINE Alu 0 147 1 3 1414 333 313 19 62 chr3 108666050 108666210 -50933573 - Charlie13b DNA Charlie -7 505 353 3 1414 795 129 0 0 chr3 108666545 108666700 -50933083 + (TC)n Simple_repeat Simple_repeat 2 156 0 3 1414 270 296 61 10 chr3 108666721 108666820 -50932963 - PB1D10 SINE Alu -9 108 5 3 1414 373 245 0 117 chr3 108666859 108666970 -50932813 - PB1D7 SINE Alu -9 111 14 3 1414 455 250 5 192 chr3 108666974 108667172 -50932611 + MTE2b LTR MaLR 5 165 -214 3 1414 331 324 97 32 chr3 108667282 108667467 -50932316 - B3A SINE B2 -1 197 1 3 1414 203 189 19 0 chr3 108667472 108667525 -50932258 + (TTG)n Simple_repeat Simple_repeat 2 55 0 3 1414 771 191 0 0 chr3 108667529 108667665 -50932118 - B1_Mus2 SINE Alu 0 147 12 3 1414 276 321 24 0 chr3 108667786 108667870 -50931913 - ID_B1 SINE B4 -55 169 84 3 1414 1047 102 7 7 chr3 108667909 108668057 -50931726 + B1_Mus1 SINE Alu 1 148 0 3 1414 987 78 0 0 chr3 108668430 108668572 -50931211 + (GA)n Simple_repeat Simple_repeat 1 142 0 3 1414 921 256 8 53 chr3 108668808 108669051 -50930732 + B4A SINE B4 2 233 -59 3 1414 807 201 0 0 chr3 108669062 108669206 -50930577 + B1_Mur4 SINE Alu 7 150 0 3 1414 189 0 0 0 chr3 108669272 108669293 -50930490 + (CACCC)n Simple_repeat Simple_repeat 3 23 0 3 1414 1219 178 116 30 chr3 108669415 108669716 -50930067 + ORR1D1 LTR MaLR 7 333 -41 3 1414 893 151 13 20 chr3 108669716 108669865 -50929918 + B1_Mur4 SINE Alu 2 149 -1 3 1414 1165 196 106 101 chr3 108669865 108669931 -50929852 + ORR1D1 LTR MaLR 338 376 -8 3 1414 764 214 6 0 chr3 108670267 108670445 -50929338 + GA-rich Low_complexity Low_complexity 2 180 0 3 1414 228 147 0 0 chr3 108670445 108670479 -50929304 + (GAAA)n Simple_repeat Simple_repeat 3 36 0 4 1414 241 250 62 90 chr3 108670542 108670687 -50929096 + RSINE1 SINE B4 23 163 -2 4 1414 512 250 83 9 chr3 108670851 108671011 -50928772 - ID_B1 SINE B4 -46 246 77 4 1414 676 209 7 29 chr3 108671086 108671224 -50928559 - B1_Mur2 SINE Alu -11 138 4 4 1414 199 309 102 9 chr3 108671293 108671401 -50928382 - MIRb SINE MIR -32 236 119 4 1414 692 228 14 98 chr3 108671419 108671633 -50928150 - B3A SINE B2 0 198 3 4 1414 868 277 9 0 chr3 108672388 108672608 -50927175 + ID_B1 SINE B4 2 223 -1 4 1414 412 255 56 9 chr3 108672624 108672731 -50927052 + PB1D7 SINE Alu 1 112 -8 4 1414 22 35 0 0 chr3 108672846 108672875 -50926908 + AT_rich Low_complexity Low_complexity 1 29 0 4 1414 604 271 62 0 chr3 108673179 108673356 -50926427 - B3A SINE B2 -10 188 1 4 1414 495 0 0 0 chr3 108674333 108674388 -50925395 + (TC)n Simple_repeat Simple_repeat 2 56 0 4 1414 25 31 0 0 chr3 108674514 108674546 -50925237 + AT_rich Low_complexity Low_complexity 1 32 0 4 1414 946 238 27 23 chr3 108675569 108675788 -50923995 - ID_B1 SINE B4 -1 223 4 4 1414 881 192 0 0 chr3 108675836 108675982 -50923801 + B1_Mur2 SINE Alu 2 147 -2 4 1414 302 252 75 0 chr3 108676118 108676202 -50923581 - MIRc SINE MIR -111 157 69 4 1414 1533 142 206 28 chr3 108676202 108676528 -50923255 + ORR1C2 LTR MaLR 1 384 0 4 1414 302 252 75 0 chr3 108676528 108676550 -50923233 - MIRc SINE MIR -200 68 44 4 1414 241 355 32 16 chr3 108677065 108677191 -50922592 - MER5B DNA MER1_type 0 178 51 4 1414 265 353 0 27 chr3 108677563 108677691 -50922092 + MIRb SINE MIR 27 153 -115 4 1414 366 299 49 42 chr3 108677691 108677817 -50921966 + ID_B1 SINE B4 81 208 -16 4 1414 191 61 30 0 chr3 108677817 108677850 -50921933 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 4 1414 366 299 49 42 chr3 108677850 108677866 -50921917 + ID_B1 SINE B4 209 224 0 4 1414 503 304 89 37 chr3 108678133 108678403 -50921380 + B4A SINE B4 1 284 -8 4 1414 381 117 0 0 chr3 108678447 108678507 -50921276 + (CA)n Simple_repeat Simple_repeat 2 61 0 4 1414 246 247 50 38 chr3 108678628 108678708 -50921075 + PB1 SINE Alu 46 126 -1 4 1414 531 0 0 0 chr3 108678892 108678951 -50920832 + (TG)n Simple_repeat Simple_repeat 2 60 0 4 1414 299 295 77 62 chr3 108678975 108679105 -50920678 - RSINE1 SINE B4 -30 135 4 4 1414 542 214 0 0 chr3 108679109 108679212 -50920571 - PB1D7 SINE Alu 0 120 18 4 1414 392 250 0 32 chr3 108679953 108680048 -50919735 + PB1D10 SINE Alu 25 116 -1 4 1414 566 291 71 0 chr3 108680488 108680629 -50919154 + RSINE1 SINE B4 3 153 -12 4 1414 741 159 15 0 chr3 108680703 108680835 -50918948 + B1_Mur3 SINE Alu 15 148 -1 4 1414 674 172 104 7 chr3 108681201 108681327 -50918456 + B1_Mur4 SINE Alu 1 140 -10 4 1414 735 12 0 0 chr3 108681327 108681411 -50918372 + (CAAAC)n Simple_repeat Simple_repeat 1 84 0 4 1414 856 290 49 78 chr3 108681506 108681854 -50917929 + MLT1B LTR MaLR 53 390 0 4 1414 663 313 108 17 chr3 108682053 108682404 -50917379 + Lx8 LINE L1 6943 7325 -148 4 1414 757 266 5 36 chr3 108682416 108682611 -50917172 + B3 SINE B2 1 189 -27 4 1414 424 184 10 10 chr3 108682983 108683087 -50916696 + G-rich Low_complexity Low_complexity 1 104 0 4 1414 933 9 0 0 chr3 108683382 108683488 -50916295 + (CA)n Simple_repeat Simple_repeat 2 107 0 4 1414 180 0 0 0 chr3 108685228 108685248 -50914535 + (T)n Simple_repeat Simple_repeat 1 20 0 4 1414 543 202 96 0 chr3 108685654 108685758 -50914025 + PB1D7 SINE Alu 1 114 -6 4 1414 440 189 120 19 chr3 108686685 108686793 -50912990 + PB1 SINE Alu 1 119 -8 4 1414 337 291 0 0 chr3 108686824 108686903 -50912880 + ID4 SINE ID 5 83 0 4 1414 477 310 39 6 chr3 108686917 108687073 -50912710 + RSINE1 SINE B4 2 162 -3 4 1414 227 250 46 15 chr3 108687185 108687315 -50912468 + ORR1B1-int LTR MaLR 621 754 -755 4 1414 953 106 7 0 chr3 108687212 108687354 -50912429 + B1_Mus1 SINE Alu 6 148 0 4 1414 707 60 70 18 chr3 108687354 108687525 -50912258 + (CAAAA)n Simple_repeat Simple_repeat 1 180 0 4 1414 441 0 0 0 chr3 108688189 108688238 -50911545 + (CA)n Simple_repeat Simple_repeat 2 50 0 4 1414 450 248 50 0 chr3 108688376 108688477 -50911306 + PB1D10 SINE Alu 1 106 -11 4 1414 315 0 0 0 chr3 108688477 108688512 -50911271 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 4 1414 318 315 92 0 chr3 108688520 108688650 -50911133 + ID_B1 SINE B4 80 221 -3 4 1414 333 0 0 0 chr3 108688998 108689035 -50910748 + (TG)n Simple_repeat Simple_repeat 2 38 0 4 1414 387 0 0 0 chr3 108689766 108689809 -50909974 + (TG)n Simple_repeat Simple_repeat 2 44 0 4 1414 818 143 0 14 chr3 108690038 108690180 -50909603 - URR1B DNA MER1_type -36 189 50 4 1414 243 232 0 0 chr3 108690328 108690384 -50909399 + ID SINE ID 6 61 -163 4 1414 327 207 73 0 chr3 108690411 108690493 -50909290 + PB1 SINE Alu 32 119 -8 4 1414 926 216 94 5 chr3 108690593 108690784 -50908999 + B3 SINE B2 2 209 -7 4 1414 22 35 0 0 chr3 108690788 108690817 -50908966 + AT_rich Low_complexity Low_complexity 1 29 0 4 1414 365 202 37 37 chr3 108690872 108690954 -50908829 + MT2B LTR ERVL 176 257 -344 4 1414 591 221 0 0 chr3 108690882 108690986 -50908797 + B1_Mus1 SINE Alu 32 135 -13 4 1414 309 51 0 0 chr3 108690988 108691027 -50908756 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 4 1414 226 330 0 82 chr3 108691027 108691042 -50908741 + ID_B1 SINE B4 212 223 -1 4 1414 443 221 108 16 chr3 108691436 108691565 -50908218 - ID_B1 SINE B4 0 224 84 4 1414 520 215 104 37 chr3 108692951 108693086 -50906697 + B1_Mus2 SINE Alu 3 146 -1 4 1414 291 245 52 21 chr3 108693236 108693332 -50906451 - MTEa LTR MaLR 0 379 281 4 1414 290 250 0 0 chr3 108693366 108693422 -50906361 + ID_B1 SINE B4 154 209 -15 4 1414 234 0 0 0 chr3 108693425 108693451 -50906332 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 4 1414 1265 178 9 23 chr3 108693459 108693678 -50906105 + B3 SINE B2 1 216 0 4 1414 331 270 67 11 chr3 108693727 108693817 -50905966 + PB1 SINE Alu 14 108 -19 4 1414 273 163 0 0 chr3 108694067 108694116 -50905667 + T-rich Low_complexity Low_complexity 1 49 0 4 1414 1030 78 50 0 chr3 108694116 108694257 -50905526 - B1_Mus1 SINE Alu 0 148 1 4 1414 279 0 0 0 chr3 108694548 108694579 -50905204 + (A)n Simple_repeat Simple_repeat 1 31 0 4 1414 243 105 0 0 chr3 108694611 108694649 -50905134 + B2_Mm2 SINE B2 1 38 -157 4 1414 325 219 65 27 chr3 108694900 108695032 -50904751 + RLTR13D3 LTR ERVK 981 1072 -42 4 1414 699 24 69 35 chr3 108695123 108695296 -50904487 + (TG)n Simple_repeat Simple_repeat 1 179 0 4 1414 206 62 0 30 chr3 108695296 108695329 -50904454 + (GTGTG)n Simple_repeat Simple_repeat 4 35 0 4 1414 561 247 6 62 chr3 108695334 108695494 -50904289 - RSINE1 SINE B4 0 165 15 4 1414 235 297 106 37 chr3 108695494 108695655 -50904128 + L1MD LINE L1 5080 5251 -895 4 1414 255 114 0 0 chr3 108695659 108695703 -50904080 + (TG)n Simple_repeat Simple_repeat 1 44 0 4 1414 614 278 0 20 chr3 108695758 108695905 -50903878 + RSINE1 SINE B4 3 146 -19 4 1414 760 230 107 24 chr3 108695921 108696126 -50903657 - MTD LTR MaLR -14 405 184 4 1414 1887 179 64 41 chr3 108696171 108696608 -50903175 + RMER20B LTR ERVK 1 447 -180 4 1414 396 234 21 0 chr3 108696654 108696748 -50903035 + PB1D10 SINE Alu 22 117 0 4 1414 476 224 95 0 chr3 108696765 108696881 -50902902 + B1F SINE Alu 23 149 0 4 1414 250 175 228 0 chr3 108696881 108696938 -50902845 + ID2 SINE ID 2 71 -12 4 1414 268 276 66 0 chr3 108697544 108697620 -50902163 + L1MD LINE L1 5525 5605 -637 4 1414 344 266 38 0 chr3 108697633 108697712 -50902071 + B1F SINE Alu 9 90 -59 4 1414 317 241 36 0 chr3 108697719 108697802 -50901981 + L1M4 LINE L1 5629 5714 -470 4 1414 902 191 82 43 chr3 108697830 108698038 -50901745 - B3 SINE B2 0 216 1 4 1414 724 243 7 0 chr3 108698165 108698309 -50901474 + B3 SINE B2 68 212 -4 4 1414 294 207 0 0 chr3 108698318 108698374 -50901409 + ID_B1 SINE B4 88 143 -149 4 1414 219 316 12 25 chr3 108698324 108698405 -50901378 + AluG_3 SINE Alu 144 223 -88 4 1414 401 0 20 0 chr3 108698443 108698492 -50901291 + (CA)n Simple_repeat Simple_repeat 1 50 0 4 1414 198 0 0 0 chr3 108698492 108698514 -50901269 + (CAA)n Simple_repeat Simple_repeat 3 24 0 4 1414 236 222 36 24 chr3 108698605 108698688 -50901095 + GA-rich Low_complexity Low_complexity 2 85 0 4 1414 8476 40 2 0 chr3 108698879 108700005 -50899778 - L1Md_F3 LINE L1 0 6584 5495 4 1414 1143 123 103 8 chr3 108700054 108700307 -50899476 + RMER17C LTR ERVK 2 278 -132 4 1414 369 0 0 0 chr3 108700308 108700349 -50899434 + (CCA)n Simple_repeat Simple_repeat 1 41 0 4 1414 1369 224 56 3 chr3 108700354 108700676 -50899107 - MTE2b LTR MaLR -40 339 1 4 1414 347 0 23 0 chr3 108700757 108700800 -50898983 + (TC)n Simple_repeat Simple_repeat 1 44 0 4 1414 459 0 0 0 chr3 108700800 108700850 -50898933 + (CA)n Simple_repeat Simple_repeat 1 51 0 4 1414 476 306 9 0 chr3 108700884 108700992 -50898791 + ID_B1 SINE B4 84 192 -32 4 1414 238 333 29 73 chr3 108700992 108701020 -50898763 + MT2B LTR ERVL 167 296 -305 4 1414 265 328 68 17 chr3 108701266 108701384 -50898399 - L2a LINE L2 -3 3423 3300 4 1414 1333 79 79 0 chr3 108701948 108701966 -50897817 - B2_Mm1a SINE B2 0 193 176 4 1414 207 0 0 0 chr3 108701966 108701989 -50897794 + (TTTA)n Simple_repeat Simple_repeat 3 25 0 5 1414 1333 79 79 0 chr3 108701989 108702148 -50897635 - B2_Mm1a SINE B2 -18 175 3 4 1414 1166 55 0 20 chr3 108702158 108702169 -50897614 - B1_Mus2 SINE Alu 0 147 139 5 1414 191 61 30 0 chr3 108702169 108702202 -50897581 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 5 1414 1166 55 0 20 chr3 108702202 108702339 -50897444 - B1_Mus2 SINE Alu -9 138 2 5 1414 848 174 202 6 chr3 108702361 108702534 -50897249 - B3 SINE B2 -5 211 5 5 1414 439 310 41 102 chr3 108702572 108702935 -50896848 - L2 LINE L2 -2106 1313 973 5 1414 334 300 56 6 chr3 108703019 108703203 -50896580 + L1MA4A LINE L1 5754 5930 -373 5 1414 219 361 8 32 chr3 108703454 108703580 -50896203 - L2 LINE L2 -2528 891 769 5 1414 272 233 69 109 chr3 108703648 108703749 -50896034 + B1F2 SINE Alu 24 120 0 5 1414 242 277 31 0 chr3 108703765 108703830 -50895953 + PB1D7 SINE Alu 1 67 -53 5 1414 346 136 17 0 chr3 108704343 108704402 -50895381 + Lx9 LINE L1 7316 7375 -269 5 1414 290 279 9 9 chr3 108707310 108707415 -50892368 + (TCTCTG)n Simple_repeat Simple_repeat 2 106 0 5 1414 242 228 126 89 chr3 108709300 108709435 -50890348 - YREP_Mm Unknown Unknown -1487 325 186 5 1414 385 252 72 0 chr3 108709325 108709436 -50890347 + ID_B1 SINE B4 98 216 -8 5 1414 704 191 16 0 chr3 108709544 108709670 -50890113 - B1_Mur1 SINE Alu -5 144 17 5 1414 258 56 0 0 chr3 108709901 108709937 -50889846 + (A)n Simple_repeat Simple_repeat 1 36 0 5 1414 347 278 49 40 chr3 108710092 108710209 -50889574 + B1F SINE Alu 1 118 -2 5 1414 294 175 55 0 chr3 108711662 108711729 -50888054 - B1_Mur1 SINE Alu -18 131 58 5 1414 372 260 31 0 chr3 108712459 108712555 -50887228 - B3A SINE B2 -99 99 1 5 1414 388 236 91 0 chr3 108715150 108715260 -50884523 + PB1D9 SINE Alu 1 120 0 5 1414 451 248 91 23 chr3 108715324 108715456 -50884327 - B1F SINE Alu 0 149 9 5 1414 212 228 114 0 chr3 108716092 108716171 -50883612 + BC1_Mm scRNA scRNA 1 88 -64 5 1414 244 92 0 84 chr3 108716942 108717013 -50882770 + CT-rich Low_complexity Low_complexity 5 69 0 5 1414 403 205 52 35 chr3 108717018 108717134 -50882649 - PB1D9 SINE Alu -2 118 1 5 1414 449 168 242 23 chr3 108717191 108717319 -50882464 - RLTR20C LTR ERVK 0 578 423 5 1414 553 256 148 46 chr3 108717316 108717599 -50882184 - RLTR20C LTR ERVK -222 312 1 5 1414 343 217 0 226 chr3 108717604 108717656 -50882127 - ID_B1 SINE B4 -11 213 169 5 1414 751 200 0 14 chr3 108717656 108717803 -50881980 + B1_Mm SINE Alu 2 146 -1 5 1414 343 217 0 226 chr3 108717803 108717887 -50881896 - ID_B1 SINE B4 -56 168 108 5 1414 216 0 0 0 chr3 108718311 108718335 -50881448 + (T)n Simple_repeat Simple_repeat 1 24 0 5 1414 602 235 30 0 chr3 108718343 108718475 -50881308 - B1F2 SINE Alu -9 140 5 5 1414 395 229 133 0 chr3 108718488 108718593 -50881190 - PB1D9 SINE Alu -1 119 1 5 1414 1398 85 16 0 chr3 108718593 108718781 -50881002 - B2_Mm2 SINE B2 -2 193 2 5 1414 204 125 0 0 chr3 108718785 108718817 -50880966 + (TTC)n Simple_repeat Simple_repeat 2 33 0 5 1414 306 0 0 0 chr3 108719001 108719035 -50880748 + (T)n Simple_repeat Simple_repeat 1 34 0 5 1414 277 146 0 154 chr3 108719484 108719549 -50880234 + B1_Mur4 SINE Alu 1 55 -95 5 1414 219 193 22 11 chr3 108719555 108719644 -50880139 + GA-rich Low_complexity Low_complexity 2 91 0 5 1414 437 139 56 56 chr3 108719670 108719684 -50880099 + B1_Mm SINE Alu 41 54 -93 5 1414 735 75 0 0 chr3 108719684 108719791 -50879992 + (GA)n Simple_repeat Simple_repeat 1 107 0 5 1414 437 139 56 56 chr3 108719791 108719883 -50879900 + B1_Mm SINE Alu 55 147 0 5 1414 944 91 0 40 chr3 108720444 108720593 -50879190 + RLTR19 LTR ERVK 1 143 -356 5 1414 4273 131 65 43 chr3 108720597 108721417 -50878366 - RMER21B LTR ERV1 -4 838 1 5 1414 1759 132 69 63 chr3 108721424 108721771 -50878012 + RLTR19 LTR ERVK 151 499 0 5 1414 320 146 0 18 chr3 108721837 108721893 -50877890 - ORR1C2 LTR MaLR 0 384 330 5 1414 1987 225 21 8 chr3 108721897 108722395 -50877388 - ORR1C2-int LTR MaLR -2 1578 1055 5 1414 2161 74 32 0 chr3 108722385 108722694 -50877089 - ORR1A2 LTR MaLR -8 319 1 5 1414 1654 251 45 65 chr3 108722694 108723268 -50876515 - ORR1C2-int LTR MaLR -425 945 383 5 1414 1265 224 31 27 chr3 108723605 108723967 -50875816 - ORR1C2-int LTR MaLR -969 401 1 5 1414 1711 132 138 3 chr3 108723972 108724306 -50875477 - ORR1C2 LTR MaLR -5 379 1 5 1414 311 307 69 44 chr3 108724328 108724488 -50875295 + RMER15 LTR ERVL 389 552 -23 5 1414 1444 311 77 62 chr3 108724519 108725225 -50874558 + RMER15-int LTR ERVL 20 735 -4264 5 1414 918 272 45 28 chr3 108725932 108726223 -50873560 + RMER15-int LTR ERVL 4472 4767 -232 5 1414 336 179 50 25 chr3 108726622 108726702 -50873081 + ID4 SINE ID 2 83 0 5 1414 1189 113 53 16 chr3 108727052 108727206 -50872577 + B2_Mm2 SINE B2 1 159 -36 5 1414 417 39 0 0 chr3 108727206 108727257 -50872526 + (TAAA)n Simple_repeat Simple_repeat 3 53 0 5 1414 1189 113 53 16 chr3 108727257 108727290 -50872493 + B2_Mm2 SINE B2 160 195 0 5 1414 180 0 0 0 chr3 108727290 108727310 -50872473 + (GAAA)n Simple_repeat Simple_repeat 1 20 0 5 1414 666 87 0 0 chr3 108727678 108727781 -50872002 + (TG)n Simple_repeat Simple_repeat 2 104 0 5 1414 479 172 20 0 chr3 108728317 108728416 -50871367 + CT-rich Low_complexity Low_complexity 4 104 0 5 1414 351 345 28 0 chr3 108728446 108728591 -50871192 - B1F2 SINE Alu 0 149 1 5 1414 340 202 131 28 chr3 108728937 108729044 -50870739 + PB1D9 SINE Alu 2 119 -1 5 1414 211 169 0 33 chr3 108729047 108729108 -50870675 + (CAAA)n Simple_repeat Simple_repeat 2 60 0 5 1414 252 0 0 0 chr3 108729653 108729681 -50870102 + (TG)n Simple_repeat Simple_repeat 2 29 0 5 1414 1259 20 0 7 chr3 108729825 108729972 -50869811 - B1_Mm SINE Alu 0 147 2 5 1414 628 256 98 6 chr3 108729993 108730166 -50869617 - B3 SINE B2 -6 210 22 5 1414 231 287 99 0 chr3 108730440 108730541 -50869242 - MER77 LTR ERVL -417 190 80 5 1414 691 322 16 8 chr3 108730581 108730825 -50868958 + MER68 LTR ERVL 144 389 -174 5 1414 768 316 79 60 chr3 108730835 108731317 -50868466 - RMER5 LTR ERV1 -11 523 33 5 1414 333 47 0 0 chr3 108731353 108731396 -50868387 + (TCTG)n Simple_repeat Simple_repeat 2 44 0 5 1414 471 35 0 0 chr3 108731404 108731461 -50868322 + (CA)n Simple_repeat Simple_repeat 2 58 0 5 1414 267 299 36 29 chr3 108731534 108731672 -50868111 + L1MD3 LINE L1 7845 7983 -12 5 1414 1384 46 51 11 chr3 108731826 108732003 -50867780 + B2_Mm1t SINE B2 2 185 -8 5 1414 1396 65 11 21 chr3 108732456 108732646 -50867137 - B2_Mm2 SINE B2 -6 189 2 5 1414 713 166 103 22 chr3 108732961 108733097 -50866686 + B1_Mur3 SINE Alu 3 149 0 5 1414 995 161 74 20 chr3 108733332 108733535 -50866248 - B3 SINE B2 -1 215 2 5 1414 282 196 18 0 chr3 108733855 108733911 -50865872 + RMER15 LTR ERVL 3 59 -516 5 1414 1845 216 102 18 chr3 108733963 108734464 -50865319 + RMER15 LTR ERVL 28 570 -5 5 1414 216 250 23 0 chr3 108734464 108734508 -50865275 + ID4 SINE ID 28 72 -11 5 1414 387 0 0 0 chr3 108734508 108734551 -50865232 + (CA)n Simple_repeat Simple_repeat 2 44 0 5 1414 219 288 68 0 chr3 108734845 108734918 -50864865 + PB1D10 SINE Alu 22 99 -18 5 1414 459 0 0 0 chr3 108734918 108734969 -50864814 + (CA)n Simple_repeat Simple_repeat 1 51 0 5 1414 1041 255 135 32 chr3 108734981 108735321 -50864462 + Lx8 LINE L1 6376 6750 -723 5 1414 1309 235 116 0 chr3 108735748 108736110 -50863673 + Lx8 LINE L1 6748 7151 -322 5 1414 266 243 26 9 chr3 108736190 108736284 -50863499 - Lx LINE L1 -779 5875 5763 5 1414 462 118 0 0 chr3 108736356 108736424 -50863359 - ORR1B1 LTR MaLR 0 367 300 5 1414 1714 209 85 27 chr3 108736424 108736872 -50862911 - RMER19C LTR ERVK 0 611 138 5 1414 707 150 22 22 chr3 108736911 108737047 -50862736 - ORR1B1 LTR MaLR -61 333 198 5 1414 293 190 139 0 chr3 108737048 108737127 -50862656 + Lx7 LINE L1 7591 7680 -16 5 1414 25 0 0 0 chr3 108737155 108737180 -50862603 + AT_rich Low_complexity Low_complexity 1 25 0 5 1414 638 139 83 127 chr3 108737241 108737398 -50862385 - B1_Mur4 SINE Alu 0 150 1 5 1414 246 294 0 0 chr3 108737456 108737524 -50862259 - MLT1A LTR MaLR -5 369 302 5 1414 3235 28 0 76 chr3 108738572 108738992 -50860791 - RLTR10 LTR ERVK -2 388 1 5 1414 16656 27 1 29 chr3 108738992 108740994 -50858789 - RLTR10-int LTR ERVK -1 1986 41 5 1414 3007 28 0 169 chr3 108741006 108741473 -50858310 - RLTR10 LTR ERVK -2 388 1 5 1414 840 240 98 68 chr3 108741690 108742016 -50857767 - MTE2a LTR MaLR -24 355 20 5 1414 180 0 0 0 chr3 108742514 108742534 -50857249 + (TGAA)n Simple_repeat Simple_repeat 2 21 0 5 1414 320 192 17 96 chr3 108742539 108742654 -50857129 - PB1 SINE Alu -8 119 14 5 1414 24 67 0 0 chr3 108743373 108743418 -50856365 + GC_rich Low_complexity Low_complexity 1 45 0 5 1414 534 234 62 7 chr3 108743827 108743973 -50855810 - ID_B1 SINE B4 -62 162 9 5 1414 254 245 118 16 chr3 108744571 108744680 -50855103 - MER5A1 DNA MER1_type -32 134 13 5 1414 282 176 25 75 chr3 108744707 108744787 -50854996 + MER3 DNA MER1_type 81 156 -53 5 1414 245 281 12 0 chr3 108744873 108744955 -50854828 - ID4 SINE ID 0 83 1 5 1414 341 232 35 138 chr3 108745292 108745437 -50854346 - MER31B LTR ERV1 -333 133 4 5 1414 267 31 0 0 chr3 108745776 108745808 -50853975 + (TTA)n Simple_repeat Simple_repeat 3 34 0 5 1414 270 316 32 0 chr3 108746027 108746122 -50853661 - PB1 SINE Alu -18 109 12 5 1414 25 31 0 0 chr3 108746205 108746237 -50853546 + AT_rich Low_complexity Low_complexity 1 32 0 5 1414 240 296 102 0 chr3 108746343 108746441 -50853342 - PB1D10 SINE Alu -6 111 4 5 1414 275 311 49 30 chr3 108746721 108746863 -50852920 - MER92C LTR ERV1 -400 154 10 5 1414 635 237 21 21 chr3 108746871 108747013 -50852770 + RSINE1 SINE B4 5 146 -19 5 1414 5826 79 22 6 chr3 108747050 108747837 -50851946 - L1Md_F2 LINE L1 -1 6581 5783 5 1414 386 55 206 0 chr3 108747873 108747946 -50851837 - L1Md_F3 LINE L1 -2 6582 6495 5 1414 35452 73 18 3 chr3 108747941 108753375 -50846408 - L1Md_F LINE L1 -91 5792 276 5 1414 974 110 29 0 chr3 108753419 108753555 -50846228 + B1_Mus2 SINE Alu 1 140 -7 5 1414 473 253 193 0 chr3 108753584 108753734 -50846049 - B3A SINE B2 -18 180 2 5 1414 394 258 0 70 chr3 108753887 108754016 -50845767 + PB1 SINE Alu 1 120 -7 5 1414 807 268 41 41 chr3 108754393 108754611 -50845172 + ID_B1 SINE B4 1 218 -6 5 1414 772 186 20 14 chr3 108754763 108754910 -50844873 + B1F2 SINE Alu 2 149 0 5 1414 245 316 0 71 chr3 108754935 108755061 -50844722 - PB1D10 SINE Alu 0 117 1 6 1414 656 269 6 6 chr3 108755061 108755140 -50844643 - ID SINE ID -144 80 2 6 1414 275 272 129 11 chr3 108755176 108755269 -50844514 - PB1D7 SINE Alu -11 109 6 6 1414 468 0 0 0 chr3 108755395 108755447 -50844336 + (CA)n Simple_repeat Simple_repeat 2 53 0 6 1414 322 230 316 28 chr3 108755447 108755662 -50844121 - B4A SINE B4 -15 277 1 6 1414 432 86 0 0 chr3 108755985 108756055 -50843728 + (TC)n Simple_repeat Simple_repeat 1 70 0 6 1414 324 0 0 0 chr3 108757158 108757194 -50842589 + (TG)n Simple_repeat Simple_repeat 1 36 0 6 1414 286 320 41 96 chr3 108757224 108757272 -50842511 + B3A SINE B2 1 46 -152 6 1414 1227 21 0 14 chr3 108757272 108757420 -50842363 + B1_Mus2 SINE Alu 1 146 -1 6 1414 286 320 41 96 chr3 108757420 108757568 -50842215 + B3A SINE B2 47 186 -12 6 1414 980 195 19 33 chr3 108757625 108757837 -50841946 - B3 SINE B2 -5 211 3 6 1414 339 85 0 0 chr3 108757848 108757895 -50841888 + (TTCC)n Simple_repeat Simple_repeat 3 49 0 6 1414 211 273 10 137 chr3 108757904 108758006 -50841777 - B1F2 SINE Alu -60 89 1 6 1414 654 269 103 27 chr3 108758033 108758367 -50841416 - L1_Rod LINE L1 -3001 2846 2468 6 1414 546 43 0 0 chr3 108758480 108758549 -50841234 + (TG)n Simple_repeat Simple_repeat 1 69 0 6 1414 774 84 0 0 chr3 108758604 108758711 -50841072 + (GGAA)n Simple_repeat Simple_repeat 3 109 0 6 1414 214 195 0 0 chr3 108758722 108758763 -50841020 + B2_Mm2 SINE B2 3 43 -152 6 1414 1222 101 31 16 chr3 108758991 108759182 -50840601 - B2_Mm2 SINE B2 0 195 2 6 1414 231 305 17 0 chr3 108759243 108759302 -50840481 - RSINE1 SINE B4 -102 63 4 6 1414 366 358 52 19 chr3 108759333 108759487 -50840296 + RSINE1 SINE B4 3 161 -4 6 1414 468 0 0 0 chr3 108759487 108759539 -50840244 + (TC)n Simple_repeat Simple_repeat 1 52 0 6 1414 252 0 0 0 chr3 108759539 108759566 -50840217 + (CA)n Simple_repeat Simple_repeat 1 28 0 6 1414 310 278 11 11 chr3 108759755 108759846 -50839937 - B4A SINE B4 -151 141 51 6 1414 638 305 0 0 chr3 108759860 108760024 -50839759 - B3A SINE B2 -31 167 4 6 1414 1110 71 0 0 chr3 108760126 108760267 -50839516 + B1_Mm SINE Alu 1 141 -6 6 1414 23 0 0 0 chr3 108760268 108760291 -50839492 + AT_rich Low_complexity Low_complexity 1 23 0 6 1414 210 37 0 0 chr3 108760729 108760756 -50839027 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 6 1414 198 0 0 0 chr3 108760999 108761021 -50838762 + (T)n Simple_repeat Simple_repeat 1 22 0 6 1414 319 259 71 36 chr3 108761207 108761319 -50838464 - PB1D10 SINE Alu -1 116 1 6 1414 370 160 30 0 chr3 108761736 108761865 -50837918 + CT-rich Low_complexity Low_complexity 1 132 0 6 1414 741 196 35 0 chr3 108761959 108762102 -50837681 - B1_Mur1 SINE Alu -1 148 1 6 1414 605 161 39 39 chr3 108762457 108762586 -50837197 + B3 SINE B2 85 213 -3 6 1414 414 162 81 0 chr3 108763326 108763400 -50836383 - ID4 SINE ID -2 81 2 6 1414 27 29 0 0 chr3 108763545 108763579 -50836204 + AT_rich Low_complexity Low_complexity 1 34 0 6 1414 592 211 18 0 chr3 108763722 108763836 -50835947 + PB1D10 SINE Alu 2 117 0 6 1414 283 179 18 0 chr3 108764907 108764963 -50834820 - ID4 SINE ID -25 58 2 6 1414 464 270 32 0 chr3 108765431 108765557 -50834226 + ID_B1 SINE B4 95 224 0 6 1414 546 98 0 0 chr3 108765829 108765911 -50833872 + (CA)n Simple_repeat Simple_repeat 2 83 0 6 1414 214 258 76 0 chr3 108766252 108766318 -50833465 - ID4 SINE ID -10 73 3 6 1414 297 242 141 0 chr3 108766542 108766641 -50833142 - PB1D10 SINE Alu 0 117 5 6 1414 767 250 52 0 chr3 108766552 108766724 -50833059 - ID_B1 SINE B4 -42 182 2 6 1414 597 227 114 0 chr3 108766880 108767012 -50832771 + B1F2 SINE Alu 1 147 -2 6 1414 634 269 12 6 chr3 108767379 108767540 -50832243 - B3A SINE B2 -36 162 1 6 1414 859 188 62 0 chr3 108767679 108767855 -50831928 - B3 SINE B2 -1 215 29 6 1414 820 179 146 5 chr3 108768082 108768267 -50831516 - B3 SINE B2 -5 211 1 6 1414 2282 124 43 11 chr3 108769525 108769893 -50829890 - RLTR14 LTR ERV1 -2 380 1 6 1414 1180 161 167 19 chr3 108770781 108771092 -50828691 - MTD LTR MaLR -62 357 1 6 1414 1777 28 14 5 chr3 108771329 108771546 -50828237 - L1_Mus2 LINE L1 -583 5983 5765 6 1414 4458 60 2 19 chr3 108771547 108772123 -50827660 + L1_Mus2 LINE L1 6001 6566 0 6 1414 978 102 70 0 chr3 108772291 108772448 -50827335 - B2_Mm2 SINE B2 -9 186 19 6 1414 1211 48 7 0 chr3 108772511 108772658 -50827125 - B1_Mus1 SINE Alu 0 148 1 6 1414 1208 105 44 0 chr3 108772658 108772838 -50826945 - B2_Mm1t SINE B2 -1 192 4 6 1414 540 238 49 0 chr3 108773631 108773753 -50826030 - B1F1 SINE Alu -21 128 1 6 1414 22 80 0 0 chr3 108773961 108774011 -50825772 + AT_rich Low_complexity Low_complexity 1 50 0 6 1414 329 234 16 0 chr3 108774118 108774203 -50825580 - BC1_Mm scRNA scRNA -65 87 1 6 1414 580 172 29 66 chr3 108774927 108775064 -50824719 - B1F SINE Alu -4 145 14 6 1414 206 236 0 0 chr3 108775169 108775224 -50824559 + A-rich Low_complexity Low_complexity 1 55 0 6 1414 27 0 0 0 chr3 108775612 108775639 -50824144 + AT_rich Low_complexity Low_complexity 1 27 0 6 1414 956 228 18 18 chr3 108776050 108776273 -50823510 - ID_B1 SINE B4 -1 223 1 6 1414 21 36 0 0 chr3 108776505 108776533 -50823250 + AT_rich Low_complexity Low_complexity 1 28 0 6 1414 335 128 468 0 chr3 108778359 108778453 -50821330 - B1_Mur4 SINE Alu -8 142 5 6 1414 327 248 139 0 chr3 108778595 108778696 -50821087 - ID_B1 SINE B4 -9 215 101 6 1414 268 235 174 0 chr3 108778808 108778923 -50820860 + MLT1J LTR MaLR 20 154 -358 6 1414 1382 99 82 4 chr3 108779135 108779378 -50820405 + Lx2A1 LINE L1 6745 7006 -2 6 1414 1240 48 0 0 chr3 108779801 108779948 -50819835 + B1_Mus2 SINE Alu 1 147 0 6 1414 392 268 27 20 chr3 108780607 108780762 -50819021 + L1MEf LINE L1 1316 1563 -4915 6 1414 613 217 43 0 chr3 108780765 108780903 -50818880 + B1_Mur1 SINE Alu 6 149 0 6 1414 574 221 33 33 chr3 108780926 108781076 -50818707 + B3A SINE B2 4 153 -45 6 1414 478 316 40 29 chr3 108781526 108781699 -50818084 - ID_B1 SINE B4 -29 195 21 6 1414 307 250 0 0 chr3 108782345 108782409 -50817374 - tRNA-Ala-GCY_ tRNA tRNA -11 64 1 6 1414 221 216 0 0 chr3 108783025 108783062 -50816721 + (CGG)n Simple_repeat Simple_repeat 3 39 0 6 1414 198 0 0 0 chr3 108783255 108783277 -50816506 + (CA)n Simple_repeat Simple_repeat 2 23 0 6 1414 702 285 114 4 chr3 108783351 108783605 -50816178 - B4A SINE B4 -3 289 8 6 1414 479 222 0 49 chr3 108783678 108783801 -50815982 - PB1D10 SINE Alu 0 117 1 6 1414 1231 142 108 0 chr3 108783817 108784021 -50815762 - URR1A DNA MER1_type 0 226 1 6 1414 885 45 15 22 chr3 108784482 108784618 -50815165 + (TCTA)n Simple_repeat Simple_repeat 1 135 0 6 1414 580 195 81 0 chr3 108784620 108784743 -50815040 + B3 SINE B2 83 215 -1 6 1414 712 285 91 25 chr3 108786302 108786576 -50813207 - Lx8 LINE L1 0 7473 7182 6 1414 183 80 0 0 chr3 108786620 108786645 -50813138 + (TG)n Simple_repeat Simple_repeat 1 25 0 6 1414 370 273 132 0 chr3 108786649 108786770 -50813013 - RSINE1 SINE B4 -26 139 3 6 1414 746 268 107 27 chr3 108787020 108787281 -50812502 + MTEb LTR MaLR 91 372 -7 6 1414 207 100 0 0 chr3 108787375 108787405 -50812378 + (TCTG)n Simple_repeat Simple_repeat 2 31 0 6 1414 640 157 9 1 chr3 108787775 108787886 -50811897 - B1_Mur4 SINE Alu -3 124 8 6 1414 363 269 16 112 chr3 108787789 108787977 -50811806 - MT2B2 LTR ERVL -328 256 87 6 1414 366 252 9 37 chr3 108788041 108788148 -50811635 - RSINE1 SINE B4 -60 105 2 6 1414 28 29 0 0 chr3 108788514 108788549 -50811234 + AT_rich Low_complexity Low_complexity 1 35 0 6 1414 412 282 89 0 chr3 108788655 108788779 -50811004 + ID_B1 SINE B4 80 214 -10 6 1414 468 280 6 95 chr3 108788916 108789074 -50810709 - B1F1 SINE Alu -5 144 1 6 1414 564 56 0 0 chr3 108789140 108789212 -50810571 + (TA)n Simple_repeat Simple_repeat 2 73 0 6 1414 1198 75 0 0 chr3 108789324 108789471 -50810312 - B1_Mus1 SINE Alu 0 148 2 6 1415 183 368 29 69 chr3 108789966 108790141 -50809642 + L2c LINE L2 3043 3210 -177 6 1415 697 299 69 27 chr3 108790553 108790814 -50808969 + L2a LINE L2 2935 3206 -169 6 1415 617 266 44 29 chr3 108791773 108791978 -50807805 - ID_B1 SINE B4 -15 209 2 6 1415 444 220 74 25 chr3 108792048 108792169 -50807614 - ID_B1 SINE B4 0 224 98 6 1415 913 169 0 0 chr3 108793499 108793647 -50806136 - B1_Mur4 SINE Alu 0 150 3 6 1415 291 28 0 0 chr3 108793841 108793877 -50805906 + (TC)n Simple_repeat Simple_repeat 2 37 0 6 1415 949 105 0 20 chr3 108793954 108794100 -50805683 - B2_Mm2 SINE B2 -52 143 1 6 1415 492 226 28 9 chr3 108794288 108794395 -50805388 - PB1D10 SINE Alu -7 110 2 6 1415 309 51 0 0 chr3 108794890 108794929 -50804854 + (TG)n Simple_repeat Simple_repeat 1 39 0 6 1415 559 328 42 34 chr3 108794988 108795250 -50804533 - B4A SINE B4 -26 266 3 6 1415 382 288 141 32 chr3 108796597 108796845 -50802938 - B4A SINE B4 -17 275 1 6 1415 304 300 153 53 chr3 108797131 108797543 -50802240 + L2 LINE L2 1429 1881 -1538 6 1415 384 314 8 0 chr3 108797850 108797971 -50801812 + MLT1A LTR MaLR 253 374 0 7 1415 180 310 94 12 chr3 108797984 108798069 -50801714 - MIRm SINE MIR -24 252 161 7 1415 892 181 83 25 chr3 108799595 108799799 -50799984 - B3 SINE B2 0 216 1 7 1415 296 239 53 32 chr3 108800190 108800285 -50799498 - PB1 SINE Alu -3 124 28 7 1415 2414 159 36 16 chr3 108801259 108801752 -50798031 + RLTR31_Mur LTR ERVK 51 553 0 7 1415 239 143 94 16 chr3 108801752 108801815 -50797968 - URR1B DNA MER1_type -21 204 137 7 1415 704 139 33 99 chr3 108801818 108801970 -50797813 + B1_Mm SINE Alu 5 146 -1 7 1415 634 184 106 26 chr3 108801991 108802142 -50797641 - URR1B DNA MER1_type -63 162 1 7 1415 269 260 90 52 chr3 108802240 108802374 -50797409 + B4A SINE B4 4 142 -150 7 1415 200 211 13 53 chr3 108802375 108802423 -50797360 + polypurine Low_complexity Low_complexity 6 52 0 7 1415 894 122 0 0 chr3 108802423 108802603 -50797180 + (GGA)n Simple_repeat Simple_repeat 1 180 0 7 1415 200 211 13 53 chr3 108802603 108802629 -50797154 + polypurine Low_complexity Low_complexity 53 77 0 7 1415 1047 207 220 12 chr3 108803546 108803883 -50795900 + MTC LTR MaLR 15 421 0 7 1415 494 239 49 28 chr3 108804606 108804748 -50795035 + B1F SINE Alu 1 145 -4 7 1415 405 267 57 32 chr3 108804805 108804929 -50794854 - B1F SINE Alu -13 136 10 7 1415 319 312 48 41 chr3 108805076 108805223 -50794560 + MIRb SINE MIR 48 195 -73 7 1415 905 275 104 72 chr3 108805286 108805921 -50793862 + Lx8 LINE L1 6815 7469 -4 7 1415 521 282 140 8 chr3 108806441 108806691 -50793092 + B4A SINE B4 6 288 -4 7 1415 200 241 55 44 chr3 108806957 108807048 -50792735 - MIRb SINE MIR -58 204 113 7 1415 21 36 0 0 chr3 108807363 108807391 -50792392 + AT_rich Low_complexity Low_complexity 1 28 0 7 1415 517 187 18 18 chr3 108807406 108807515 -50792268 - B1_Mur1 SINE Alu -8 141 33 7 1415 225 255 137 39 chr3 108807439 108807541 -50792242 - MT2B LTR ERVL -338 263 152 7 1415 764 249 101 59 chr3 108807541 108808018 -50791765 - Lx8 LINE L1 -4 7469 6973 7 1415 246 258 30 0 chr3 108808635 108808701 -50791082 + HAL1 LINE L1 174 241 -2266 7 1415 263 327 18 35 chr3 108809825 108809939 -50789844 + PB1D10 SINE Alu 1 112 -5 7 1415 3160 34 42 5 chr3 108810409 108810791 -50788992 + MTA_Mm LTR MaLR 1 396 0 7 1415 23 0 0 0 chr3 108811589 108811612 -50788171 + AT_rich Low_complexity Low_complexity 1 23 0 7 1415 728 210 36 48 chr3 108811628 108811793 -50787990 - RSINE1 SINE B4 0 165 3 7 1415 385 196 31 42 chr3 108812680 108812776 -50787007 + PB1D10 SINE Alu 23 117 0 7 1415 910 141 6 57 chr3 108813143 108813301 -50786482 + B1_Mur4 SINE Alu 1 150 0 7 1415 359 212 37 163 chr3 108813605 108813740 -50786043 + PB1D7 SINE Alu 3 120 0 7 1415 531 31 0 0 chr3 108815135 108815200 -50784583 + (GA)n Simple_repeat Simple_repeat 2 66 0 7 1415 207 365 12 0 chr3 108815464 108815549 -50784234 - L2 LINE L2 -1357 2062 1977 7 1415 965 256 63 60 chr3 108816192 108816639 -50783144 + L1MA9 LINE L1 5202 5667 -645 7 1415 401 214 11 11 chr3 108816674 108816764 -50783019 - PB1D10 SINE Alu -7 110 21 7 1415 456 205 80 0 chr3 108816770 108816882 -50782901 + L1MA9 LINE L1 5659 5779 -389 7 1415 369 0 0 0 chr3 108816882 108816923 -50782860 + (CA)n Simple_repeat Simple_repeat 1 41 0 7 1415 295 197 97 90 chr3 108816932 108817066 -50782717 + L1MA9 LINE L1 5818 5952 -360 7 1415 248 277 128 0 chr3 108817309 108817403 -50782380 + L1MC1 LINE L1 5924 6029 -315 7 1415 519 265 97 22 chr3 108817465 108817650 -50782133 + L1MC1 LINE L1 6134 6332 -1 7 1415 1128 88 0 7 chr3 108817968 108818116 -50781667 - B1_Mus2 SINE Alu 0 147 1 7 1415 1225 243 10 30 chr3 108818264 108818561 -50781222 + B4A SINE B4 2 292 0 7 1415 269 354 0 0 chr3 108818586 108818665 -50781118 + B4A SINE B4 214 292 0 7 1415 374 267 11 22 chr3 108818758 108818850 -50780933 - PB1D10 SINE Alu -26 91 1 7 1415 299 286 0 0 chr3 108819019 108819096 -50780687 + (TG)n Simple_repeat Simple_repeat 2 78 0 7 1415 381 243 193 92 chr3 108819107 108819356 -50780427 - B4 SINE B4 -11 281 8 7 1415 739 241 27 50 chr3 108819742 108820000 -50779783 + B4A SINE B4 1 230 -62 7 1415 994 214 48 0 chr3 108820024 108820230 -50779553 + B3 SINE B2 1 216 0 7 1415 920 159 57 0 chr3 108820306 108820482 -50779301 + MTC LTR MaLR 228 413 -8 7 1415 977 255 125 41 chr3 108820769 108821172 -50778611 + L1MC1 LINE L1 5870 6302 -31 7 1415 760 132 44 7 chr3 108821665 108821802 -50777981 + B2_Mm2 SINE B2 23 164 -31 7 1415 663 137 47 73 chr3 108822173 108822323 -50777460 - B2_Mm2 SINE B2 -14 181 36 7 1415 404 241 0 0 chr3 108822386 108822469 -50777314 + B3 SINE B2 129 211 -5 7 1415 405 0 0 0 chr3 108822929 108822974 -50776809 + (CAAAA)n Simple_repeat Simple_repeat 2 46 0 7 1415 265 146 21 0 chr3 108823243 108823291 -50776492 - PB1 SINE Alu 0 127 79 7 1415 305 24 0 23 chr3 108823300 108823343 -50776440 + (CAAA)n Simple_repeat Simple_repeat 2 43 0 7 1415 765 269 123 4 chr3 108823389 108823665 -50776118 - L1MA9 LINE L1 -383 5929 5621 7 1415 598 170 66 0 chr3 108823778 108823884 -50775899 + PB1D9 SINE Alu 1 113 -7 7 1415 617 191 121 8 chr3 108824284 108824416 -50775367 + B1_Mur1 SINE Alu 2 148 -1 7 1415 246 179 0 0 chr3 108824461 108824517 -50775266 + (TATG)n Simple_repeat Simple_repeat 2 57 0 7 1415 395 19 19 0 chr3 108824873 108824925 -50774858 + (CA)n Simple_repeat Simple_repeat 2 54 0 7 1415 255 61 0 0 chr3 108824925 108824958 -50774825 + (GGGA)n Simple_repeat Simple_repeat 1 33 0 7 1415 784 97 0 198 chr3 108825563 108825658 -50774125 - URR1A DNA MER1_type 0 226 150 7 1415 731 159 7 68 chr3 108825658 108825806 -50773977 + B1_Mus2 SINE Alu 2 140 -7 7 1415 784 97 0 198 chr3 108825806 108825902 -50773881 - URR1A DNA MER1_type -77 149 73 7 1415 446 33 17 0 chr3 108826715 108826775 -50773008 + (TG)n Simple_repeat Simple_repeat 2 62 0 7 1415 279 247 22 45 chr3 108826823 108826868 -50772915 - MER68 LTR ERVL 0 563 518 7 1415 3105 50 39 5 chr3 108826868 108827251 -50772532 + MTA_Mm LTR MaLR 1 396 0 7 1415 279 247 22 45 chr3 108827251 108827294 -50772489 - MER68 LTR ERVL -46 517 477 7 1415 434 262 179 18 chr3 108827401 108827619 -50772164 - MER68 LTR ERVL -308 255 3 7 1415 234 0 0 0 chr3 108828831 108828857 -50770926 + (CG)n Simple_repeat Simple_repeat 1 26 0 7 1415 195 129 0 0 chr3 108828857 108828887 -50770896 + (TATG)n Simple_repeat Simple_repeat 3 33 0 7 1415 29 84 0 0 chr3 108830325 108830396 -50769387 + GC_rich Low_complexity Low_complexity 1 71 0 7 1415 26 0 0 0 chr3 108830657 108830683 -50769100 + GC_rich Low_complexity Low_complexity 1 26 0 7 1415 790 204 114 10 chr3 108831300 108831493 -50768290 - ID_B1 SINE B4 -9 215 3 7 1415 28 22 0 22 chr3 108831565 108831576 -50768207 + AT_rich Low_complexity Low_complexity 1 11 0 7 1415 462 267 160 6 chr3 108831576 108831757 -50768026 - B3 SINE B2 -6 210 2 7 1415 28 22 0 22 chr3 108831757 108831791 -50767992 + AT_rich Low_complexity Low_complexity 1 34 0 7 1415 407 245 76 70 chr3 108831868 108832026 -50767757 + RSINE1 SINE B4 4 162 -3 7 1415 198 0 0 0 chr3 108832035 108832057 -50767726 + (TAAA)n Simple_repeat Simple_repeat 4 25 0 7 1415 232 290 39 115 chr3 108832094 108832250 -50767533 + RSINE1 SINE B4 7 150 -15 7 1415 495 33 0 0 chr3 108832253 108832314 -50767469 + (CA)n Simple_repeat Simple_repeat 1 61 0 7 1415 870 180 30 18 chr3 108832960 108833124 -50766659 + B4A SINE B4 126 291 -1 7 1415 197 97 32 0 chr3 108833164 108833195 -50766588 - L2 LINE L2 -1408 2011 1980 7 1415 181 312 51 13 chr3 108833739 108833817 -50765966 - L2 LINE L2 -556 2863 2783 7 1415 322 301 59 68 chr3 108833945 108834166 -50765617 - LTR33A_ LTR ERVL -310 221 3 7 1415 396 0 0 0 chr3 108834189 108834233 -50765550 + (TG)n Simple_repeat Simple_repeat 2 45 0 7 1415 912 151 209 5 chr3 108834380 108834567 -50765216 - URR1B DNA MER1_type 0 225 1 7 1415 250 361 119 27 chr3 108834670 108834855 -50764928 + MLT1J2 LTR MaLR 242 443 -5 7 1415 194 308 0 149 chr3 108835172 108835279 -50764504 + L2c LINE L2 3287 3377 -10 7 1415 744 232 23 6 chr3 108835388 108835561 -50764222 + RLTR28B LTR ERVL 9 184 -297 7 1415 258 56 0 0 chr3 108835666 108835702 -50764081 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 7 1415 234 175 45 45 chr3 108835764 108835830 -50763953 + RLTR28B LTR ERVL 435 500 -24 7 1415 674 261 40 107 chr3 108835942 108836330 -50763453 - ORR1E LTR MaLR 0 379 1 7 1415 240 318 142 59 chr3 108836519 108836723 -50763060 + MLT1J1 LTR MaLR 147 367 -77 7 1415 1797 134 25 128 chr3 108836723 108837090 -50762693 + ORR1A4 LTR MaLR 1 329 0 7 1415 252 0 0 0 chr3 108837096 108837124 -50762659 + (T)n Simple_repeat Simple_repeat 1 28 0 7 1415 289 264 103 0 chr3 108837535 108837622 -50762161 - MLT1A0 LTR MaLR -232 133 38 7 1415 846 287 102 15 chr3 108837644 108837987 -50761796 + MLT1J1-int LTR MaLR 142 514 -873 7 1415 251 292 106 0 chr3 108838059 108838172 -50761611 + MLT1J1-int LTR MaLR 608 732 -655 7 1415 245 339 139 0 chr3 108838197 108838312 -50761471 + MLT1J1-int LTR MaLR 832 962 -425 7 1415 560 222 130 14 chr3 108838431 108838577 -50761206 - MER20 DNA MER1_type -50 169 7 7 1415 333 378 0 12 chr3 108838581 108838747 -50761036 + MLT1J1-int LTR MaLR 1196 1359 -28 7 1415 1897 159 72 64 chr3 108838747 108839137 -50760646 - ORR1B1 LTR MaLR 0 394 2 7 1415 317 316 118 15 chr3 108839225 108839360 -50760423 + MLT1J1 LTR MaLR 150 298 -146 7 1415 776 208 158 23 chr3 108839532 108839798 -50759985 - L1MB3 LINE L1 -4 6179 5878 7 1415 287 261 0 0 chr3 108839816 108839885 -50759898 - ID4_ SINE ID 0 83 15 7 1415 358 250 0 11 chr3 108840567 108840660 -50759123 + B3A SINE B2 61 152 -46 7 1415 297 0 0 0 chr3 108840664 108840697 -50759086 + (CA)n Simple_repeat Simple_repeat 2 34 0 7 1415 21 57 0 0 chr3 108840699 108840734 -50759049 + AT_rich Low_complexity Low_complexity 1 35 0 7 1415 403 186 202 20 chr3 108840930 108841029 -50758754 + PB1D10 SINE Alu 1 117 0 7 1415 554 122 120 9 chr3 108841188 108841296 -50758487 + MTC LTR MaLR 1 120 -301 7 1415 1949 39 9 0 chr3 108841296 108841588 -50758195 - L1Md_T LINE L1 0 6582 6348 7 1415 413 152 0 42 chr3 108841588 108841624 -50758159 + T-rich Low_complexity Low_complexity 1 33 0 8 1415 1919 43 9 0 chr3 108841706 108841938 -50757845 - L1Md_T LINE L1 -1 6581 6348 8 1415 243 88 0 0 chr3 108841940 108841974 -50757809 + (T)n Simple_repeat Simple_repeat 1 34 0 8 1415 2333 50 0 0 chr3 108842056 108842339 -50757444 - L1Md_A LINE L1 0 6582 6300 8 1415 434 168 19 29 chr3 108842339 108842443 -50757340 + MTC LTR MaLR 108 210 -211 7 1415 4764 151 50 5 chr3 108842443 108843286 -50756497 + Lx3C LINE L1 5924 6804 -172 8 1415 212 122 0 24 chr3 108843286 108843328 -50756455 + (GGGAGA)n Simple_repeat Simple_repeat 3 43 0 8 1415 453 285 13 40 chr3 108843399 108843549 -50756234 + RSINE1 SINE B4 3 148 -17 8 1415 1123 265 66 46 chr3 108843990 108844385 -50755398 + RCHARR1 DNA MER1_type 4 406 -568 8 1415 558 237 22 44 chr3 108844386 108844523 -50755260 + RSINE1 SINE B4 2 135 -30 8 1415 712 315 95 37 chr3 108844590 108844969 -50754814 + Lx8 LINE L1 7049 7449 -24 8 1415 1455 222 66 5 chr3 108844969 108845358 -50754425 + MTD LTR MaLR 1 399 -20 8 1415 440 252 13 65 chr3 108845402 108845555 -50754228 + RCHARR1 DNA MER1_type 828 972 -2 8 1415 613 230 72 9 chr3 108845839 108846015 -50753768 - B3A SINE B2 -35 181 1 8 1415 694 305 0 6 chr3 108847365 108847543 -50752240 + B3A SINE B2 1 177 -21 8 1415 392 217 85 21 chr3 108848393 108848487 -50751296 + ID_B1 SINE B4 102 201 -23 8 1415 4516 217 34 31 chr3 108849441 108850453 -50749330 + RMER1B Other Other 52 1066 0 8 1415 740 232 70 0 chr3 108850707 108850732 -50749051 - B3 SINE B2 -18 198 174 8 1415 281 47 23 0 chr3 108850732 108850775 -50749008 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 8 1415 740 232 70 0 chr3 108850775 108850934 -50748849 - B3 SINE B2 -43 173 2 8 1415 404 306 82 6 chr3 108851650 108851821 -50747962 - MIR SINE MIR -12 250 67 8 1415 453 36 0 0 chr3 108851932 108851987 -50747796 + (TCTA)n Simple_repeat Simple_repeat 4 58 0 8 1415 612 73 0 0 chr3 108851988 108852070 -50747713 + (GA)n Simple_repeat Simple_repeat 1 82 0 8 1415 480 223 24 16 chr3 108852914 108853037 -50746746 - B3 SINE B2 -92 124 1 8 1415 529 323 84 11 chr3 108853225 108853416 -50746367 - MLT1J1 LTR MaLR -234 210 6 8 1415 290 208 83 0 chr3 108853893 108853965 -50745818 + ID4 SINE ID 1 78 -5 8 1415 284 342 15 111 chr3 108854127 108854262 -50745521 + LTR78 LTR ERV1 272 393 -911 8 1415 435 254 35 69 chr3 108855302 108855446 -50744337 - MTEa LTR MaLR -235 144 6 8 1415 269 306 95 0 chr3 108855451 108855598 -50744185 + MIR SINE MIR 77 237 -25 8 1415 24 0 0 0 chr3 108855614 108855638 -50744145 + AT_rich Low_complexity Low_complexity 1 24 0 8 1415 559 238 115 7 chr3 108856123 108856271 -50743512 + B3A SINE B2 1 164 -34 8 1415 423 0 0 0 chr3 108856279 108856326 -50743457 + (CA)n Simple_repeat Simple_repeat 2 48 0 8 1415 261 0 0 0 chr3 108856326 108856354 -50743429 + (GA)n Simple_repeat Simple_repeat 2 30 0 8 1415 290 227 107 0 chr3 108856421 108856496 -50743287 - ID4 SINE ID 0 83 1 8 1415 23 33 0 0 chr3 108856512 108856542 -50743241 + AT_rich Low_complexity Low_complexity 1 30 0 8 1415 219 69 0 0 chr3 108857425 108857454 -50742329 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 8 1415 741 141 8 0 chr3 108857457 108857578 -50742205 - B1_Mus2 SINE Alu -14 133 12 8 1415 463 313 115 19 chr3 108857679 108858001 -50741782 + ORR1E LTR MaLR 1 353 -6 8 1415 231 324 51 55 chr3 108858543 108858601 -50741182 - HAL1 LINE L1 -758 1749 1688 8 1415 591 15 0 0 chr3 108858601 108858669 -50741114 + (CAG)n Simple_repeat Simple_repeat 1 68 0 8 1415 231 324 51 55 chr3 108858669 108858780 -50741003 - HAL1 LINE L1 -820 1687 1576 8 1415 771 191 7 13 chr3 108858780 108858929 -50740854 - B1_Mur1 SINE Alu 0 149 2 8 1415 231 324 51 55 chr3 108858929 108858993 -50740790 - HAL1 LINE L1 -932 1575 1517 8 1415 579 307 92 24 chr3 108859061 108859497 -50740286 + L1MB1 LINE L1 5693 6164 -4 8 1415 211 273 18 0 chr3 108859529 108859584 -50740199 + PB1D7 SINE Alu 7 62 -58 8 1415 1019 16 8 0 chr3 108859931 108860056 -50739727 + (TCTA)n Simple_repeat Simple_repeat 3 128 0 8 1415 481 263 68 49 chr3 108860098 108860539 -50739244 - RLTR12B LTR ERVK -37 322 1 8 1415 534 250 76 0 chr3 108860566 108860698 -50739085 + RSINE1 SINE B4 3 144 -21 8 1415 762 197 103 5 chr3 108860997 108861181 -50738602 - B3 SINE B2 -14 202 1 8 1415 294 211 26 66 chr3 108861344 108861420 -50738363 - B1_Mus2 SINE Alu -66 81 9 8 1415 429 20 0 0 chr3 108861420 108861470 -50738313 + (TTTA)n Simple_repeat Simple_repeat 2 51 0 8 1415 223 283 31 61 chr3 108861470 108861481 -50738302 - ID SINE ID -135 89 79 8 1415 372 277 85 30 chr3 108861717 108861881 -50737902 - MLT1J2 LTR MaLR -36 412 240 8 1415 1062 82 0 29 chr3 108861936 108862111 -50737672 + (TCCC)n Simple_repeat Simple_repeat 4 173 0 8 1415 186 43 0 0 chr3 108863317 108863340 -50736443 + (TTTTC)n Simple_repeat Simple_repeat 1 23 0 8 1415 4149 161 57 26 chr3 108863345 108864121 -50735662 - Lx5 LINE L1 -1 7049 6207 8 1415 23 54 0 0 chr3 108864456 108864493 -50735290 + AT_rich Low_complexity Low_complexity 1 37 0 8 1415 614 248 14 7 chr3 108864503 108864641 -50735142 + B1_Mur1 SINE Alu 5 143 -6 8 1415 276 338 170 14 chr3 108864803 108865085 -50734698 + MLT1C LTR MaLR 6 331 -136 8 1415 231 161 210 0 chr3 108865127 108865189 -50734594 - Lx5 LINE L1 -11 7039 6965 8 1415 339 259 73 9 chr3 108865191 108865300 -50734483 + MLT1C LTR MaLR 346 461 -6 8 1415 205 27 53 26 chr3 108865375 108865413 -50734370 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 8 1415 36 40 0 0 chr3 108865896 108865946 -50733837 + AT_rich Low_complexity Low_complexity 1 50 0 8 1415 758 342 23 22 chr3 108867768 108868189 -50731594 + Lx9 LINE L1 7034 7470 -174 8 1415 1114 96 22 27 chr3 108868330 108868513 -50731270 - ORR1B1 LTR MaLR -2 392 211 8 1415 9012 117 37 16 chr3 108868521 108870259 -50729524 - Lx4A LINE L1 -11 7047 5280 8 1415 7506 59 1 15 chr3 108870264 108870813 -50728970 - L1_Mus2 LINE L1 -1 6565 6022 8 1415 3449 13 18 0 chr3 108870813 108871202 -50728581 + MTA_Mm LTR MaLR 1 396 0 8 1415 7506 59 1 15 chr3 108871202 108871596 -50728187 - L1_Mus2 LINE L1 -545 6021 5635 8 1415 1023 100 0 0 chr3 108871594 108871744 -50728039 - Lx4A LINE L1 -579 5298 5149 8 1415 4539 105 26 7 chr3 108871734 108871950 -50727833 + L1_Mur2 LINE L1 4411 4630 -1247 8 1415 216 86 0 0 chr3 108871950 108871985 -50727798 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 8 1415 4539 105 26 7 chr3 108871985 108872461 -50727322 + L1_Mur2 LINE L1 4631 5116 -761 8 1415 1200 154 23 9 chr3 108872462 108872678 -50727105 - ORR1B1 LTR MaLR -164 230 12 8 1415 277 96 0 0 chr3 108872678 108872730 -50727053 - Lx LINE L1 -3 6651 6600 8 1415 38251 52 5 3 chr3 108873032 108879289 -50720494 - L1Md_F2 LINE L1 -4 6578 310 8 1415 1438 192 4 1 chr3 108879324 108879608 -50720175 - L1_Mur2 LINE L1 -699 5184 4896 8 1415 5046 167 75 14 chr3 108880017 108880909 -50718874 + Lx5 LINE L1 5982 6928 -122 8 1415 1071 142 53 0 chr3 108880947 108881137 -50718646 - L1_Mur2 LINE L1 -2872 3008 2809 8 1415 293 242 97 39 chr3 108881146 108881249 -50718534 - L1MEc LINE L1 -3442 2877 2769 8 1415 374 220 87 11 chr3 108881301 108881393 -50718390 - B1F SINE Alu -44 105 7 8 1415 441 0 0 0 chr3 108881397 108881446 -50718337 + (CA)n Simple_repeat Simple_repeat 2 50 0 8 1415 355 266 147 31 chr3 108881458 108881621 -50718162 - L1MEc LINE L1 -4327 2073 1892 8 1415 380 286 94 33 chr3 108882005 108882149 -50717634 + B3A SINE B2 1 158 -40 8 1415 225 0 0 0 chr3 108882149 108882174 -50717609 + (CA)n Simple_repeat Simple_repeat 1 25 0 8 1415 380 286 94 33 chr3 108882174 108882210 -50717573 + B3A SINE B2 159 192 -6 8 1415 450 158 12 0 chr3 108882594 108882676 -50717107 - B1_Mus2 SINE Alu -19 128 46 8 1415 2091 255 86 35 chr3 108884161 108884917 -50714866 - Lx7 LINE L1 -1655 5989 5177 8 1415 891 112 0 0 chr3 108884917 108885051 -50714732 + (TTTC)n Simple_repeat Simple_repeat 3 136 0 8 1415 2091 273 100 31 chr3 108885051 108885305 -50714478 - Lx7 LINE L1 -704 5176 4901 8 1415 331 190 12 23 chr3 108886613 108886680 -50713103 + URR1A DNA MER1_type 66 132 -94 8 1415 2869 65 27 3 chr3 108886680 108887051 -50712732 + L1Md_F2 LINE L1 6191 6570 -12 8 1415 331 190 12 23 chr3 108887051 108887069 -50712714 + URR1A DNA MER1_type 133 150 -76 8 1415 334 249 59 6 chr3 108887453 108887623 -50712160 + (GTGTG)n Simple_repeat Simple_repeat 1 179 0 8 1415 281 179 115 55 chr3 108887665 108887890 -50711893 + (CAGTG)n Simple_repeat Simple_repeat 1 238 0 8 1415 998 214 43 5 chr3 108888174 108888381 -50711402 - B3 SINE B2 0 216 2 8 1415 1872 195 84 21 chr3 108888930 108889312 -50710471 - MTD LTR MaLR -11 408 3 8 1415 575 91 0 0 chr3 108889539 108889616 -50710167 - B1_Mur1 SINE Alu -24 125 49 8 1415 534 43 0 0 chr3 108889616 108889685 -50710098 + (TG)n Simple_repeat Simple_repeat 2 70 0 8 1415 1002 229 26 5 chr3 108889689 108889878 -50709905 - B3 SINE B2 -21 195 3 8 1415 1707 129 0 0 chr3 108889878 108890103 -50709680 - URR1B DNA MER1_type 0 225 1 8 1415 944 173 0 7 chr3 108890136 108890276 -50709507 - B1_Mur1 SINE Alu -7 142 4 8 1415 448 310 20 27 chr3 108890416 108890565 -50709218 + RSINE1 SINE B4 3 150 -15 8 1415 996 199 100 13 chr3 108890769 108891008 -50708775 + Lx8 LINE L1 6328 6587 -886 8 1415 848 250 213 29 chr3 108891016 108891391 -50708392 + Lx8 LINE L1 6849 7292 -181 8 1415 413 252 10 10 chr3 108891554 108891658 -50708125 - MTE2b LTR MaLR -40 339 236 8 1415 536 110 24 0 chr3 108891651 108891733 -50708050 - RMER6C LTR ERVK -606 84 1 8 1415 384 312 0 44 chr3 108891768 108891882 -50707901 + MTEa LTR MaLR 1 109 -270 8 1415 305 355 16 80 chr3 108891938 108892125 -50707658 + MT2A LTR ERVL 102 276 -257 8 1415 1148 198 44 35 chr3 108892129 108892461 -50707322 + ORR1D1 LTR MaLR 1 359 0 8 1415 324 343 43 14 chr3 108892477 108892616 -50707167 + MT2A LTR ERVL 292 434 -99 8 1415 2383 202 37 42 chr3 108892646 108893164 -50706619 - RLTR17 LTR ERVK -78 614 100 8 1415 231 214 135 73 chr3 108893157 108893253 -50706530 + MT2A LTR ERVL 432 533 0 8 1415 2526 195 12 2 chr3 108893886 108894303 -50705480 + MTC LTR MaLR 1 421 0 8 1415 693 257 29 0 chr3 108894660 108894800 -50704983 + RSINE1 SINE B4 1 144 -21 8 1415 2820 173 118 15 chr3 108894806 108895668 -50704115 + Lx9 LINE L1 6694 7644 0 8 1415 894 193 191 11 chr3 108895672 108895855 -50703928 + B3 SINE B2 1 216 0 8 1415 1707 130 156 10 chr3 108896031 108896333 -50703450 - ORR1B1 LTR MaLR -8 386 41 8 1415 407 68 0 17 chr3 108896341 108896401 -50703382 + (CA)n Simple_repeat Simple_repeat 1 59 0 9 1415 338 203 0 0 chr3 108896401 108896460 -50703323 + Lx9 LINE L1 6763 6821 -823 9 1415 621 192 0 0 chr3 108896460 108896585 -50703198 + (CATATA)n Simple_repeat Simple_repeat 2 126 0 9 1415 244 326 142 26 chr3 108896759 108897027 -50702756 - MER46C DNA MER2_type -26 312 14 9 1415 602 289 132 6 chr3 108897477 108897651 -50702132 + B4 SINE B4 1 196 -96 9 1415 639 39 0 0 chr3 108897654 108897732 -50702051 + (TC)n Simple_repeat Simple_repeat 2 79 0 9 1415 1505 200 24 3 chr3 108897741 108898032 -50701751 + MTD LTR MaLR 16 312 -107 9 1415 1228 236 45 98 chr3 108898070 108898470 -50701313 - MTE2a LTR MaLR 0 379 1 9 1415 1325 234 78 0 chr3 108898641 108898987 -50700796 + L1M2 LINE L1 4558 4930 -1213 9 1415 3789 88 6 2 chr3 108899046 108899533 -50700250 - L1_Mus3 LINE L1 -6 6632 6144 9 1415 958 50 0 47 chr3 108899534 108899582 -50700201 + L1_Mus3 LINE L1 5801 5848 -790 9 1415 3786 13 0 2 chr3 108899582 108899979 -50699804 - MTA_Mm LTR MaLR 0 396 1 9 1415 1277 80 265 38 chr3 108899979 108900258 -50699525 + L1_Mus3 LINE L1 5849 6189 -449 9 1415 274 247 0 24 chr3 108900247 108900330 -50699453 + L1_Rod LINE L1 4966 5046 -801 9 1415 335 236 36 36 chr3 108900364 108900474 -50699309 + L1_Mur1 LINE L1 5188 5297 -589 9 1415 329 253 25 0 chr3 108900478 108900557 -50699226 + B4 SINE B4 1 81 -211 9 1415 535 268 36 14 chr3 108900598 108900738 -50699045 - RSINE1 SINE B4 -8 157 15 9 1415 784 250 107 84 chr3 108900731 108900993 -50698790 - B4 SINE B4 -22 270 3 9 1415 678 313 24 24 chr3 108901000 108901337 -50698446 + L1MC3 LINE L1 7428 7764 -21 9 1415 2898 152 63 15 chr3 108902036 108902578 -50697205 - RLTR20B3 LTR ERVK -9 568 1 9 1415 935 89 0 0 chr3 108902812 108902936 -50696847 - B1_Mus1 SINE Alu 0 148 25 9 1415 534 207 17 0 chr3 108903218 108903334 -50696449 - Lx7 LINE L1 0 7696 7579 9 1415 2274 132 5 48 chr3 108903336 108903553 -50696230 - L1_Mur3 LINE L1 -3028 2852 2650 9 1415 216 0 0 0 chr3 108903553 108903577 -50696206 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 9 1415 2274 132 5 48 chr3 108903577 108903779 -50696004 - L1_Mur3 LINE L1 -3231 2649 2452 9 1415 515 316 32 0 chr3 108903892 108904047 -50695736 - RSINE1 SINE B4 -1 164 5 9 1415 324 0 0 0 chr3 108904053 108904089 -50695694 + (TTTTA)n Simple_repeat Simple_repeat 2 37 0 9 1415 36 53 0 0 chr3 108904312 108904369 -50695414 + AT_rich Low_complexity Low_complexity 1 57 0 9 1415 278 307 102 0 chr3 108904696 108904823 -50694960 - L2a LINE L2 -9 3417 3278 9 1415 27 0 0 0 chr3 108905974 108906001 -50693782 + AT_rich Low_complexity Low_complexity 1 27 0 9 1415 324 191 38 9 chr3 108906067 108906173 -50693610 + (TATAA)n Simple_repeat Simple_repeat 3 111 0 9 1415 955 256 105 22 chr3 108907760 108908131 -50691652 + Lx8 LINE L1 7072 7473 0 9 1415 386 281 87 10 chr3 108908282 108908386 -50691397 + ID_B1 SINE B4 79 190 -34 9 1415 201 74 0 0 chr3 108908388 108908415 -50691368 + (TCCC)n Simple_repeat Simple_repeat 3 29 0 9 1415 198 0 0 0 chr3 108908417 108908439 -50691344 + (CA)n Simple_repeat Simple_repeat 2 23 0 9 1415 603 245 148 102 chr3 108908527 108908891 -50690892 - MLT1B LTR MaLR -9 381 1 9 1415 1013 123 0 6 chr3 108908960 108909140 -50690643 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 9 1415 1218 75 0 7 chr3 108909141 108909288 -50690495 - B1_Mus2 SINE Alu -1 146 1 9 1415 330 98 0 0 chr3 108909474 108909525 -50690258 + (CATA)n Simple_repeat Simple_repeat 1 51 0 9 1415 829 330 47 20 chr3 108909610 108909953 -50689830 - Tigger7 DNA MER2_type -2081 410 59 9 1415 969 113 0 43 chr3 108910658 108910797 -50688986 - B1_Mur4 SINE Alu -16 134 2 9 1415 314 264 86 1 chr3 108910797 108910902 -50688881 - L1M3 LINE L1 -2007 4139 4027 9 1415 296 263 0 92 chr3 108910904 108911013 -50688770 - MLT1A1 LTR MaLR -2 406 308 9 1415 4029 39 0 17 chr3 108911088 108911559 -50688224 + L1Md_F3 LINE L1 6122 6584 0 9 1415 281 305 73 48 chr3 108911650 108911718 -50688065 - MLT1A1 LTR MaLR -279 129 62 9 1415 1101 251 53 103 chr3 108911718 108912117 -50687666 + MTE2a LTR MaLR 1 379 0 9 1415 281 305 73 48 chr3 108912117 108912172 -50687611 - MLT1A1 LTR MaLR -347 61 3 9 1415 1216 263 173 30 chr3 108912172 108912830 -50686953 - L1M3 LINE L1 -2116 4024 3273 9 1415 368 311 29 80 chr3 108912958 108913133 -50686650 - MTE-int LTR MaLR -1080 500 335 9 1415 992 226 19 24 chr3 108913160 108913369 -50686414 - B3 SINE B2 -2 214 7 9 1415 254 68 45 0 chr3 108913369 108913413 -50686370 + (TTTTTA)n Simple_repeat Simple_repeat 2 47 0 9 1415 21 0 0 0 chr3 108913433 108913454 -50686329 + AT_rich Low_complexity Low_complexity 1 21 0 9 1415 369 0 0 0 chr3 108914642 108914683 -50685100 + (TG)n Simple_repeat Simple_repeat 2 42 0 9 1415 446 312 31 8 chr3 108914683 108914812 -50684971 - B1F SINE Alu -9 140 9 9 1415 464 86 0 14 chr3 108915841 108915912 -50683871 + (TTA)n Simple_repeat Simple_repeat 3 72 0 9 1415 21 0 0 0 chr3 108915940 108915961 -50683822 + AT_rich Low_complexity Low_complexity 1 21 0 9 1415 975 228 14 14 chr3 108916038 108916247 -50683536 - B3 SINE B2 0 216 8 9 1415 2719 52 65 0 chr3 108916418 108916743 -50683040 + ORR1A1 LTR MaLR 1 346 0 9 1415 384 276 148 35 chr3 108917094 108917263 -50682520 + MER3 DNA MER1_type 5 192 -17 9 1415 1753 184 81 6 chr3 108917264 108917598 -50682185 + ORR1B2 LTR MaLR 1 359 -8 9 1415 7653 159 47 30 chr3 108917602 108919105 -50680678 + ORR1B2-int LTR MaLR 1 1962 -1 9 176 1444 260 200 19 chr3 108920520 108921111 -50678672 + L1MB2 LINE L1 5301 5998 -173 9 1416 703 159 0 9 chr3 108921111 108921225 -50678558 - B3 SINE B2 -103 113 1 9 1416 274 280 98 53 chr3 108921270 108921402 -50678381 + L2a LINE L2 3283 3420 -6 9 1416 1003 243 14 106 chr3 108921705 108922094 -50677689 - B4A SINE B4 -23 269 2 9 1416 274 312 106 0 chr3 108922958 108923099 -50676684 - L1MC4 LINE L1 -413 7629 7474 9 1416 196 182 29 29 chr3 108923243 108923311 -50676472 + GA-rich Low_complexity Low_complexity 1 68 0 9 1416 241 156 127 25 chr3 108923461 108923540 -50676243 - Lx5 LINE L1 0 7050 6964 9 1416 181 376 65 0 chr3 108925278 108925371 -50674412 - MIRc SINE MIR -99 169 71 9 1416 267 31 0 0 chr3 108925995 108926027 -50673756 + (C)n Simple_repeat Simple_repeat 1 32 0 9 1416 334 268 0 0 chr3 108927477 108927548 -50672235 + B1F SINE Alu 18 88 -61 9 1416 429 20 0 0 chr3 108928312 108928362 -50671421 + (TAA)n Simple_repeat Simple_repeat 1 50 0 9 1416 463 256 62 62 chr3 108928435 108928597 -50671186 - RSINE1 SINE B4 0 165 4 9 1416 549 305 106 66 chr3 108928949 108929251 -50670532 - LTR16B1 LTR ERVL -164 316 3 9 1416 270 248 143 0 chr3 108929516 108929621 -50670162 - Lx9 LINE L1 -6 7638 7519 9 1416 486 0 0 0 chr3 108929621 108929675 -50670108 + (CA)n Simple_repeat Simple_repeat 1 54 0 9 1416 3449 203 44 36 chr3 108929675 108930177 -50669606 - Lx9 LINE L1 -183 7461 6956 9 1416 3219 78 18 0 chr3 108930177 108930577 -50669206 - MTB_Mm LTR MaLR 0 407 1 9 1416 3449 213 180 43 chr3 108930577 108931651 -50668132 - Lx9 LINE L1 -689 6955 5734 9 1416 447 251 46 23 chr3 108931875 108932018 -50667765 - MLT2B2 LTR ERVL -409 145 1 9 1416 508 235 181 43 chr3 108932357 108932495 -50667288 - RSINE1 SINE B4 -6 159 3 9 1416 304 277 0 47 chr3 108932712 108932818 -50666965 - Lx8 LINE L1 -2 7471 7371 9 1416 764 243 74 17 chr3 108932914 108933144 -50666639 - Lx8 LINE L1 -259 7214 6972 9 1416 237 318 0 0 chr3 108933203 108933266 -50666517 - B2_Mm2 SINE B2 -132 63 1 9 1416 189 342 79 0 chr3 108933793 108933869 -50665914 - MIR SINE MIR -155 107 26 9 1416 22 0 0 0 chr3 108934094 108934116 -50665667 + AT_rich Low_complexity Low_complexity 1 22 0 9 1416 481 246 56 14 chr3 108934976 108935120 -50664663 + B3 SINE B2 65 214 -2 9 1416 429 235 20 20 chr3 108936843 108936943 -50662840 + ID_B1 SINE B4 68 167 -57 9 1416 525 155 302 0 chr3 108937028 108937144 -50662639 - ORR1D1 LTR MaLR -212 162 12 9 1416 258 103 0 0 chr3 108937200 108937239 -50662544 - ORR1D1 LTR MaLR -345 39 1 9 1416 1800 11 0 0 chr3 108938042 108938230 -50661553 - B2_Mm1a SINE B2 -5 188 1 9 1416 492 311 126 100 chr3 108938348 108938816 -50660967 + MER89 LTR ERV1 2 481 -78 9 1416 639 244 131 40 chr3 108939402 108939419 -50660364 - B3A SINE B2 -5 193 180 9 1416 216 0 0 0 chr3 108939419 108939443 -50660340 + (TG)n Simple_repeat Simple_repeat 2 25 0 9 1416 639 244 131 40 chr3 108939443 108939600 -50660183 - B3A SINE B2 -19 179 3 9 1416 767 156 7 0 chr3 108941080 108941221 -50658562 + CT-rich Low_complexity Low_complexity 3 144 0 9 1416 471 35 0 0 chr3 108941278 108941335 -50658448 + (TC)n Simple_repeat Simple_repeat 2 58 0 9 1416 4162 73 19 0 chr3 108941530 108942105 -50657678 - MusHAL1 LINE L1 -632 2080 1495 9 1416 39939 49 12 4 chr3 108942121 108948539 -50651244 - L1Md_T LINE L1 -1 6581 149 9 1416 5626 184 12 179 chr3 108948534 108949247 -50650536 - L1_Mur2 LINE L1 -3169 2708 2302 9 1416 2451 78 60 0 chr3 108949247 108949613 -50650170 + L1_Mus1 LINE L1 6210 6567 0 9 1416 7704 76 25 4 chr3 108949613 108951052 -50648731 - L1VL2 LINE L1 -1607 2008 538 9 1416 376 239 36 18 chr3 108951072 108951183 -50648600 - MER82 DNA MER2_type -171 482 370 9 1416 369 0 0 0 chr3 108951412 108951453 -50648330 + (CA)n Simple_repeat Simple_repeat 2 42 0 9 1416 212 250 14 14 chr3 108951541 108951614 -50648169 + CT-rich Low_complexity Low_complexity 1 73 0 9 1416 841 255 19 14 chr3 108952789 108953004 -50646779 - B3 SINE B2 0 216 1 9 1416 871 261 154 12 chr3 108953228 108953338 -50646445 - L1MA4A LINE L1 -379 5924 5788 9 1416 288 0 0 0 chr3 108953338 108953370 -50646413 + (TG)n Simple_repeat Simple_repeat 2 33 0 9 1416 871 266 153 30 chr3 108953370 108953785 -50645998 - L1MA4A LINE L1 -516 5787 5228 9 1416 2253 297 62 16 chr3 108953847 108954777 -50645006 - L1MA4A LINE L1 -1111 4769 3797 9 1416 438 273 107 0 chr3 108954880 108954910 -50644873 - B3 SINE B2 -8 208 169 9 1416 180 0 0 0 chr3 108954910 108954930 -50644853 + (TG)n Simple_repeat Simple_repeat 2 21 0 9 1416 438 273 107 0 chr3 108954930 108955020 -50644763 - B3 SINE B2 -48 168 76 9 1416 651 273 140 60 chr3 108955201 108955688 -50644095 - RMER13A LTR ERVK -240 620 95 9 1416 358 125 36 0 chr3 108955782 108955838 -50643945 - B3 SINE B2 -131 85 28 1 1416 458 226 0 38 chr3 108955853 108955959 -50643824 - L1MA4A LINE L1 -2089 3791 3690 9 1416 338 60 69 0 chr3 108955961 108956025 -50643758 + L1_Mur3 LINE L1 3153 3257 -2889 1 1416 1642 26 5 0 chr3 108956101 108956290 -50643493 - B2_Mm1t SINE B2 -2 191 2 1 1416 317 341 47 24 chr3 108956535 108956748 -50643035 + Charlie25 DNA MER1_type 413 630 -1894 1 1416 204 97 0 0 chr3 108956934 108956965 -50642818 + (CAA)n Simple_repeat Simple_repeat 2 32 0 1 1416 608 0 14 0 chr3 108957096 108957168 -50642615 + (TCTA)n Simple_repeat Simple_repeat 4 76 0 1 1416 887 145 14 21 chr3 108957170 108957311 -50642472 - B1_Mus2 SINE Alu -5 142 3 1 1416 395 378 56 44 chr3 108957313 108957673 -50642110 + Charlie25 DNA MER1_type 1868 2231 -293 1 1416 224 278 0 18 chr3 108957673 108957728 -50642055 - ID2 SINE ID -14 69 16 1 1416 244 48 48 0 chr3 108957748 108957790 -50641993 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 1 1416 1234 265 83 24 chr3 108958067 108958200 -50641583 - RMER5 LTR ERV1 0 534 394 1 1416 270 0 0 0 chr3 108958200 108958230 -50641553 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 1 1416 1234 265 83 24 chr3 108958230 108958517 -50641266 - RMER5 LTR ERV1 -141 393 89 1 1416 439 283 51 0 chr3 108958517 108958655 -50641128 - RMER5 LTR ERV1 -356 178 34 1 1416 204 300 29 0 chr3 108960352 108960422 -50639361 - MIRb SINE MIR -72 196 125 1 1416 331 252 51 25 chr3 108960635 108960753 -50639030 - B3 SINE B2 -2 214 94 1 1416 500 0 17 0 chr3 108960755 108960815 -50638968 + (TG)n Simple_repeat Simple_repeat 1 61 0 1 1416 421 293 68 57 chr3 108961152 108961344 -50638439 - MER77 LTR ERVL -11 596 403 1 1416 424 323 82 44 chr3 108961860 108962177 -50637606 - MLT1A0 LTR MaLR -19 346 18 1 1416 387 0 0 0 chr3 108962215 108962258 -50637525 + (TTCC)n Simple_repeat Simple_repeat 3 45 0 1 1416 735 319 113 25 chr3 108962428 108962914 -50636869 - MLT1F LTR MaLR -19 529 1 1 1416 471 239 0 0 chr3 108963343 108963473 -50636310 + (TG)n Simple_repeat Simple_repeat 1 130 0 1 1416 707 299 89 11 chr3 108963479 108963750 -50636033 - B4 SINE B4 0 292 1 1 1416 296 273 11 0 chr3 108964497 108964585 -50635198 - L1MB8 LINE L1 -1 6177 6089 1 1416 650 282 129 7 chr3 108964593 108964939 -50634844 - L1MB4 LINE L1 -1 6173 5790 1 1416 489 304 75 29 chr3 108965512 108965793 -50633990 - L1M4c LINE L1 -4558 1826 1533 1 1416 1494 152 132 12 chr3 108965858 108966184 -50633599 - ORR1D1 LTR MaLR -9 365 1 1 1416 231 157 0 0 chr3 108966531 108966582 -50633201 + CT-rich Low_complexity Low_complexity 2 52 0 1 1416 506 81 22 22 chr3 108966760 108966849 -50632934 + L1Md_F2 LINE L1 6494 6582 0 1 1416 897 217 35 25 chr3 108966851 108967054 -50632729 + B3 SINE B2 8 212 -4 1 1416 193 339 44 9 chr3 108967738 108967851 -50631932 - MIR SINE MIR -97 165 49 1 1416 546 254 49 91 chr3 108968122 108968386 -50631397 - RMER15 LTR ERVL -36 539 287 1 1416 911 158 14 0 chr3 108970625 108970771 -50629012 + B1_Mus1 SINE Alu 1 148 0 1 1416 509 211 89 5 chr3 108971391 108971543 -50628240 - MTD LTR MaLR 0 419 220 1 1416 1018 187 183 0 chr3 108975092 108975338 -50624445 + B4A SINE B4 1 291 -1 1 1416 419 302 9 0 chr3 108975538 108975654 -50624129 + ID_B1 SINE B4 82 198 -26 1 1416 332 254 11 0 chr3 108975897 108976017 -50623766 - ID4_ SINE ID -24 128 6 1 1416 2318 58 0 23 chr3 108976399 108976736 -50623047 - L1Md_F2 LINE L1 0 6582 6273 1 1416 196 250 39 0 chr3 108976839 108976891 -50622892 + MER5B DNA MER1_type 1 54 -124 1 1416 1579 163 21 64 chr3 108976904 108977324 -50622459 + RMER17C LTR ERVK 1 402 -8 1 1416 411 21 0 0 chr3 108977325 108977373 -50622410 + (CAA)n Simple_repeat Simple_repeat 3 50 0 1 1416 216 284 103 8 chr3 108977767 108977884 -50621899 - L2 LINE L2 -844 2575 2448 1 1416 185 216 59 0 chr3 108977958 108978009 -50621774 + MER5A DNA MER1_type 136 189 0 1 1416 349 36 36 0 chr3 108978022 108978077 -50621706 + (CAAAA)n Simple_repeat Simple_repeat 3 59 0 1 1416 321 204 18 101 chr3 108978157 108978266 -50621517 - L2 LINE L2 -1075 2344 2245 1 1416 291 278 0 53 chr3 108978761 108978837 -50620946 - ID4 SINE ID -11 72 1 1 1416 966 115 6 25 chr3 108979430 108979591 -50620192 + URR1A DNA MER1_type 69 226 0 1 1416 651 301 38 5 chr3 108980655 108980839 -50618944 + B3A SINE B2 1 190 -8 1 1416 22 70 0 0 chr3 108980839 108980882 -50618901 + AT_rich Low_complexity Low_complexity 1 43 0 1 1416 2391 141 81 13 chr3 108981013 108981472 -50618311 + RLTR11A LTR ERVK 1 490 -38 1 1416 203 294 29 29 chr3 108981534 108981604 -50618179 + L2b LINE L2 3306 3375 0 1 1416 207 173 0 0 chr3 108982181 108982233 -50617550 + T-rich Low_complexity Low_complexity 1 52 0 1 1416 911 264 128 75 chr3 108984036 108984465 -50615318 - MT2A LTR ERVL -81 452 1 1 1416 2028 113 8 124 chr3 108985677 108986049 -50613734 + ORR1A4 LTR MaLR 1 329 0 1 1416 283 378 16 16 chr3 108986226 108986417 -50613366 - L1M4b LINE L1 -4652 2356 2166 1 1416 783 282 77 11 chr3 108986534 108986806 -50612977 - B4A SINE B4 -1 291 2 1 1416 362 276 76 57 chr3 108986811 108987022 -50612761 - L1M4b LINE L1 -5235 2099 1885 1 1416 351 0 0 0 chr3 108987072 108987111 -50612672 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 1416 2156 120 3 66 chr3 108987111 108987459 -50612324 - ORR1A4 LTR MaLR -3 326 1 1 1416 578 207 57 8 chr3 108987471 108987593 -50612190 - RSINE1 SINE B4 -35 130 3 1 1416 1866 229 8 62 chr3 108987699 108988170 -50611613 + RMER19C LTR ERVK 1 446 -165 1 1416 2096 55 14 7 chr3 108988171 108988463 -50611320 - L1_Mur1 LINE L1 -2602 3284 2991 1 1416 4016 82 6 7 chr3 108988451 108988991 -50610792 + L1_Mur1 LINE L1 5041 5579 -307 1 1416 672 197 14 7 chr3 108988991 108989134 -50610649 + RMER19C LTR ERVK 756 899 -3 1 1416 299 274 156 0 chr3 108989213 108989415 -50610368 + L1MB4 LINE L1 5343 5590 -722 1 1416 368 272 20 30 chr3 108989466 108989635 -50610148 + L1MB4 LINE L1 5694 5861 -436 1 1416 729 194 0 0 chr3 108989647 108989807 -50609976 + (TG)n Simple_repeat Simple_repeat 1 160 0 1 1416 204 146 62 0 chr3 108989898 108989946 -50609837 + (TTTA)n Simple_repeat Simple_repeat 4 54 0 1 1416 1841 180 18 59 chr3 108990092 108990482 -50609301 - ORR1D1 LTR MaLR 0 374 1 1 1416 663 37 0 0 chr3 108991161 108991243 -50608540 + (TCC)n Simple_repeat Simple_repeat 2 83 0 1 1416 220 326 37 18 chr3 108991243 108991355 -50608428 - ID4 SINE ID -38 114 1 1 1416 345 323 82 61 chr3 108991637 108992016 -50607767 - L1M5 LINE L1 -1602 4544 4158 1 1416 692 215 24 30 chr3 108992035 108992203 -50607580 - Lx7 LINE L1 0 7696 7530 1 1416 350 303 49 89 chr3 108992607 108992933 -50606850 - L1M5 LINE L1 -2395 3751 3439 1 1416 338 333 32 13 chr3 108993012 108993170 -50606613 - L1MC4 LINE L1 -1182 6860 6700 1 1416 846 278 121 7 chr3 108993242 108993648 -50606135 + L1MC2 LINE L1 5708 6159 -185 1 1416 751 73 264 0 chr3 108993787 108993897 -50605886 + B1_Mus1 SINE Alu 2 140 -8 1 1416 1136 82 10 52 chr3 108993908 108994100 -50605683 + L1_Mus3 LINE L1 6455 6638 0 1 1416 29 60 0 0 chr3 108994198 108994248 -50605535 + AT_rich Low_complexity Low_complexity 1 50 0 1 1416 2798 82 13 13 chr3 108994404 108994798 -50604985 + Lx LINE L1 6249 6642 -12 1 1416 774 192 187 47 chr3 108995803 108996103 -50603680 - RLTR15 LTR ERVK -15 344 3 1 1416 1022 106 106 0 chr3 108996570 108996740 -50603043 - L1_Mus3 LINE L1 0 6638 6451 1 1416 3041 84 5 2 chr3 108996780 108997173 -50602610 - MTA_Mm LTR MaLR -2 394 1 1 1416 750 301 69 51 chr3 108997541 108997992 -50601791 - MLT1J-int LTR MaLR -927 460 2 1 1416 268 403 50 0 chr3 108998193 108998312 -50601471 + LTR33A_ LTR ERVL 37 161 -370 1 1416 1226 247 32 99 chr3 109000461 109000876 -50598907 - MTE2a LTR MaLR 0 421 18 1 1416 1369 236 56 44 chr3 109001400 109001824 -50597959 + RLTR26 LTR ERVK 5 466 -176 2 1416 258 340 10 0 chr3 109002510 109002610 -50597173 - MER103 DNA DNA -43 123 23 3 1416 201 116 47 0 chr3 109002689 109002732 -50597051 + T-rich Low_complexity Low_complexity 3 47 0 4 1416 10240 74 38 15 chr3 109002734 109004399 -50595384 - Lx3_Mus LINE L1 0 7009 5341 5 1416 331 326 52 42 chr3 109005135 109005327 -50594456 - MLT1C LTR MaLR 0 467 274 6 1416 324 355 121 63 chr3 109005806 109006137 -50593646 - MLT1J LTR MaLR -162 350 1 7 1416 23 54 0 0 chr3 109006408 109006445 -50593338 + AT_rich Low_complexity Low_complexity 1 37 0 8 1416 410 312 26 75 chr3 109007777 109007959 -50591824 - LTR73 LTR ERV1 -292 280 109 9 1416 180 0 0 0 chr3 109007959 109007979 -50591804 + (CAAA)n Simple_repeat Simple_repeat 4 23 0 1 1416 410 312 26 75 chr3 109007979 109008063 -50591720 - LTR73 LTR ERV1 -464 108 27 9 1416 261 238 0 0 chr3 109008404 109008484 -50591299 + (TG)n Simple_repeat Simple_repeat 1 80 0 1 1416 1044 280 81 11 chr3 109008494 109008765 -50591018 - B4 SINE B4 -2 290 1 1 1416 1998 213 45 8 chr3 109009871 109010273 -50589510 + MTD LTR MaLR 1 417 -2 1 1416 467 60 0 15 chr3 109010764 109010832 -50588951 + (TCTA)n Simple_repeat Simple_repeat 4 70 0 1 1416 214 162 0 26 chr3 109010833 109010847 -50588936 + (TG)n Simple_repeat Simple_repeat 1 14 0 1 1416 1112 68 0 43 chr3 109010847 109011031 -50588752 + (TATATG)n Simple_repeat Simple_repeat 1 176 0 1 1416 214 162 0 26 chr3 109011031 109011054 -50588729 + (TG)n Simple_repeat Simple_repeat 2 24 0 1 1416 434 219 38 9 chr3 109012697 109012803 -50586980 + MER94 DNA AcHobo 25 133 -1 1 1416 234 0 0 0 chr3 109015983 109016009 -50583774 + (CTGTG)n Simple_repeat Simple_repeat 2 27 0 1 1416 333 337 84 24 chr3 109016151 109016259 -50583524 + MLT2F LTR ERVL 2 119 -544 2 1416 426 257 0 84 chr3 109016259 109016378 -50583405 + PB1D9 SINE Alu 1 109 -11 2 1416 1160 318 115 24 chr3 109016379 109016885 -50582898 + MLT2F LTR ERVL 110 661 -2 2 1416 620 178 7 0 chr3 109017064 109017210 -50582573 + (TA)n Simple_repeat Simple_repeat 1 147 0 2 1416 3039 159 71 11 chr3 109017461 109018022 -50581761 - RLTR17 LTR ERVK 0 692 98 2 1416 687 321 24 28 chr3 109018045 109018336 -50581447 - B4A SINE B4 0 292 3 2 1416 253 356 111 48 chr3 109018459 109018893 -50580890 - L2 LINE L2 -1045 2374 1914 2 1416 870 278 131 16 chr3 109019297 109019611 -50580172 - ORR1E LTR MaLR -6 353 4 2 1416 634 215 169 77 chr3 109019986 109020097 -50579686 - URR1A DNA MER1_type 0 226 123 2 1416 3000 30 36 0 chr3 109020097 109020154 -50579629 - ORR1A0 LTR MaLR 0 346 290 2 1416 279 54 0 0 chr3 109020154 109020191 -50579592 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 3 1416 3000 30 36 0 chr3 109020191 109020467 -50579316 - ORR1A0 LTR MaLR -57 289 2 2 1416 634 215 169 77 chr3 109020467 109020479 -50579304 - URR1A DNA MER1_type -104 122 111 2 1416 5837 56 19 0 chr3 109020479 109021181 -50578602 + L1Md_F3 LINE L1 5869 6583 -1 3 1416 634 215 169 77 chr3 109021181 109021263 -50578520 - URR1A DNA MER1_type -116 110 4 2 1416 302 328 87 48 chr3 109021446 109021654 -50578129 + L3 LINE CR1 4023 4238 -251 3 1416 360 366 21 21 chr3 109022296 109022324 -50577459 + B1F SINE Alu 1 106 -41 3 1416 459 263 0 20 chr3 109022324 109022425 -50577358 + ID_B1 SINE B4 110 208 -16 3 1416 603 0 0 0 chr3 109022431 109022498 -50577285 + (CAAAC)n Simple_repeat Simple_repeat 2 68 0 3 1416 837 142 44 7 chr3 109022618 109022753 -50577030 - RMER19C LTR ERVK -2 609 470 3 1416 9716 83 11 1 chr3 109022753 109024096 -50575687 - L1_Mur1 LINE L1 -1256 4630 3275 3 1416 398 159 0 0 chr3 109024096 109024165 -50575618 + Lx3A LINE L1 6913 6981 0 3 1416 1973 191 155 2 chr3 109024182 109024601 -50575182 - RMER19C LTR ERVK -128 483 1 3 1416 478 221 152 70 chr3 109024739 109024920 -50574863 + L1MA6 LINE L1 5360 5591 -588 3 1416 860 236 68 5 chr3 109024920 109025112 -50574671 + B3 SINE B2 3 206 -10 4 1416 1758 278 31 18 chr3 109025112 109025661 -50574122 + L1MA6 LINE L1 5592 6158 -142 3 1416 616 319 42 19 chr3 109025721 109025783 -50574000 + Lx7 LINE L1 5488 5551 -329 4 1416 5193 63 5 8 chr3 109025783 109026420 -50573363 + L1Md_F2 LINE L1 5948 6582 0 4 1416 675 264 28 9 chr3 109026420 109026616 -50573167 + Lx7 LINE L1 5552 5755 -1718 4 1416 2631 196 182 27 chr3 109027482 109028180 -50571603 + Lx7 LINE L1 6846 7651 -45 4 1416 312 91 0 0 chr3 109028253 109028297 -50571486 + (TA)n Simple_repeat Simple_repeat 2 45 0 4 1416 355 325 39 7 chr3 109028297 109028452 -50571331 - L1_Mur3 LINE L1 -147 5733 5574 4 1416 287 308 18 27 chr3 109028826 109028936 -50570847 + PB1D9 SINE Alu 5 113 -7 4 1416 294 43 0 0 chr3 109029348 109029395 -50570388 - L1Md_A LINE L1 0 6582 6536 4 1416 216 0 0 0 chr3 109029886 109029910 -50569873 + (TC)n Simple_repeat Simple_repeat 2 25 0 4 1416 639 39 0 0 chr3 109029910 109029987 -50569796 + (TA)n Simple_repeat Simple_repeat 1 78 0 4 1416 1776 110 27 8 chr3 109030003 109030259 -50569524 - L1Md_F2 LINE L1 -4 6578 6318 4 1416 25338 63 5 1 chr3 109030259 109033730 -50566053 - L1Md_A LINE L1 -1412 4471 987 5 1416 24 0 0 0 chr3 109033921 109033945 -50565838 + AT_rich Low_complexity Low_complexity 1 24 0 5 1416 1769 125 218 0 chr3 109033952 109034435 -50565348 - L1Md_A LINE L1 -5639 977 390 5 1416 288 257 82 77 chr3 109034455 109034649 -50565134 - HAL1 LINE L1 -24 2483 2289 5 1416 346 289 124 59 chr3 109034815 109035186 -50564597 - HAL1 LINE L1 -440 2067 1673 5 1416 428 344 26 21 chr3 109035207 109035397 -50564386 + LTR33B LTR ERVL 43 233 -270 5 1416 253 311 104 0 chr3 109036057 109036163 -50563620 + MLT1B LTR MaLR 1 117 -257 5 1416 463 320 64 34 chr3 109036289 109036316 -50563467 + MLT1B LTR MaLR 181 207 -183 5 1416 3028 94 44 15 chr3 109036316 109036727 -50563056 + L1_Mus1 LINE L1 6144 6566 -1 5 1416 463 320 64 34 chr3 109036727 109036903 -50562880 + MLT1B LTR MaLR 208 390 0 5 1416 237 125 0 40 chr3 109036985 109037035 -50562748 + A-rich Low_complexity Low_complexity 1 48 0 5 1416 317 352 133 50 chr3 109037790 109038068 -50561715 + MLT1I LTR MaLR 111 411 0 5 1416 633 315 70 42 chr3 109038273 109038631 -50561152 + ERVL-E-int LTR ERVL 2194 2561 -3106 5 1416 207 265 14 29 chr3 109038845 109038915 -50560868 + GA-rich Low_complexity Low_complexity 3 71 0 5 1416 321 228 0 0 chr3 109039645 109039724 -50560059 + CT-rich Low_complexity Low_complexity 3 81 0 6 1416 285 299 106 38 chr3 109039993 109040125 -50559658 - L3 LINE CR1 -2227 2262 2122 6 1416 249 221 0 56 chr3 109040555 109040627 -50559156 - MLT1J2 LTR MaLR 0 444 377 6 1416 25 65 0 0 chr3 109040627 109040673 -50559110 + AT_rich Low_complexity Low_complexity 1 46 0 6 1416 522 343 44 10 chr3 109040746 109040949 -50558834 - MLT1J2 LTR MaLR -233 215 6 6 1416 1023 76 0 40 chr3 109041495 109041646 -50558137 - L1Md_F2 LINE L1 0 6582 6438 6 1416 771 92 0 0 chr3 109042515 109042624 -50557159 + (TCCC)n Simple_repeat Simple_repeat 4 112 0 6 1416 399 249 5 10 chr3 109042789 109043208 -50556575 + (CA)n Simple_repeat Simple_repeat 1 417 0 6 1416 610 266 70 16 chr3 109043429 109043616 -50556167 + B3A SINE B2 1 197 -1 6 1416 22 70 0 0 chr3 109043616 109043659 -50556124 + AT_rich Low_complexity Low_complexity 1 43 0 6 1416 389 294 210 11 chr3 109043897 109043963 -50555820 - MLT1D LTR MaLR -8 497 426 6 1416 1339 162 46 14 chr3 109043963 109044182 -50555601 + URR1A DNA MER1_type 1 226 0 7 1416 389 294 210 11 chr3 109044182 109044301 -50555482 - MLT1D LTR MaLR -80 425 275 6 1416 2158 151 42 26 chr3 109044469 109044849 -50554934 - ORR1B1 LTR MaLR -8 386 1 7 1416 1186 246 0 0 chr3 109045452 109045676 -50554107 - URR1B DNA MER1_type 0 225 2 7 1416 211 228 17 17 chr3 109045703 109045761 -50554022 + CT-rich Low_complexity Low_complexity 1 58 0 7 1416 465 66 0 0 chr3 109045790 109045851 -50553932 + (TG)n Simple_repeat Simple_repeat 1 61 0 7 1416 290 325 133 31 chr3 109045868 109046105 -50553678 - B4A SINE B4 -32 260 3 7 1416 185 294 56 45 chr3 109048494 109048583 -50551200 + MIR3 SINE MIR 114 203 -5 7 1416 841 284 48 33 chr3 109048828 109049098 -50550685 - B4A SINE B4 -18 274 1 7 1416 251 288 70 26 chr3 109049431 109049545 -50550238 - MLT1L LTR MaLR -210 400 282 7 2 242 329 69 50 chr3 109051892 109052110 -50547673 + L2b LINE L2 265 486 -2933 7 1417 666 191 51 51 chr3 109052130 109052345 -50547438 + MTD-int LTR MaLR 1028 1242 -16 8 1417 1669 195 113 18 chr3 109052345 109052726 -50547057 + MTD LTR MaLR 1 417 -2 8 1417 300 301 58 0 chr3 109053359 109053462 -50546321 + L2b LINE L2 2964 3072 -303 7 1417 216 135 0 0 chr3 109055234 109055271 -50544512 + (TATG)n Simple_repeat Simple_repeat 2 38 0 8 1417 2282 186 118 0 chr3 109055277 109055728 -50544055 - Lx5 LINE L1 -6 7044 6541 8 1417 1485 89 0 10 chr3 109056284 109056477 -50543306 - B2_Mm1t SINE B2 -1 192 2 8 1417 396 293 79 88 chr3 109057702 109057930 -50541853 - MLT1D LTR MaLR 0 505 280 8 1417 243 167 0 0 chr3 109057956 109058004 -50541779 - MLT1D LTR MaLR -304 201 154 8 1417 379 294 58 26 chr3 109059408 109059595 -50540188 - MIRb SINE MIR -59 209 8 8 1417 711 250 92 10 chr3 109060407 109060613 -50539170 + ID_B1 SINE B4 1 223 -1 8 1417 36919 45 0 15 chr3 109061052 109066301 -50533482 + L1Md_F LINE L1 419 5586 -297 8 1417 8662 29 0 3 chr3 109066301 109067300 -50532483 + L1Md_A LINE L1 5587 6582 0 8 1417 363 78 0 0 chr3 109067414 109067465 -50532318 + (TC)n Simple_repeat Simple_repeat 1 51 0 8 1417 219 36 0 0 chr3 109067460 109067488 -50532295 + (CA)n Simple_repeat Simple_repeat 1 28 0 9 1417 356 271 64 70 chr3 109067962 109068133 -50531650 - L1MA4 LINE L1 -375 5925 5737 9 1417 956 297 81 98 chr3 109068136 109068831 -50530952 - Lx9 LINE L1 -4 7640 6958 9 1417 596 181 0 0 chr3 109068842 109068969 -50530814 + Lx3C LINE L1 5998 6124 -852 9 1417 708 239 12 30 chr3 109069244 109069408 -50530375 - ID_B1 SINE B4 -63 161 1 9 1417 676 119 0 8 chr3 109069483 109069602 -50530181 - Lx2B LINE L1 0 7000 6883 9 1417 1908 111 18 57 chr3 109069732 109070067 -50529716 - RLTRETN_Mm LTR ERVK 0 322 1 9 1417 1521 195 106 9 chr3 109070789 109071130 -50528653 - ORR1D1 LTR MaLR 0 374 1 9 1417 1563 76 38 0 chr3 109071366 109071603 -50528180 - RLTR10A LTR ERVK 0 411 166 9 1417 2633 92 42 5 chr3 109071614 109072022 -50527761 - IAP-d-int LTR ERVK -327 1660 1288 9 1417 3369 49 154 17 chr3 109072026 109072501 -50527282 - IAP-d-int LTR ERVK -1015 5527 4988 9 1417 731 217 26 0 chr3 109072487 109072639 -50527144 - IAP-d-int LTR ERVK -6040 502 347 9 1417 1197 79 277 15 chr3 109072636 109072889 -50526894 - IAP-d-int LTR ERVK -1385 602 302 9 1417 2916 73 29 22 chr3 109072889 109073297 -50526486 - RLTR10A LTR ERVK 0 411 1 9 1417 243 0 0 0 chr3 109074153 109074180 -50525603 + (TC)n Simple_repeat Simple_repeat 2 28 0 9 1417 445 160 0 29 chr3 109074180 109074283 -50525500 + CT-rich Low_complexity Low_complexity 2 101 0 1 1417 3336 39 0 0 chr3 109074908 109075297 -50524486 + L1Md_A LINE L1 6194 6582 0 1 1417 195 248 142 58 chr3 109075469 109075589 -50524194 - L2 LINE L2 -480 2939 2810 1 1417 191 327 126 30 chr3 109075676 109075843 -50523940 - MER5A DNA MER1_type 0 189 7 1 1417 257 246 18 0 chr3 109075948 109076005 -50523778 + CT-rich Low_complexity Low_complexity 3 60 0 1 1417 205 194 0 0 chr3 109077089 109077125 -50522658 + (TAG)n Simple_repeat Simple_repeat 1 36 0 1 1417 302 270 96 42 chr3 109077147 109077313 -50522470 - MIR SINE MIR -39 223 49 1 1417 503 364 23 14 chr3 109077654 109077871 -50521912 - RMER15 LTR ERVL -21 554 336 1 1417 716 188 186 36 chr3 109078040 109078233 -50521550 - URR1A DNA MER1_type 0 226 5 1 1417 3596 18 0 0 chr3 109078356 109078752 -50521031 - MTA_Mm LTR MaLR 0 396 1 1 1417 9357 33 2 5 chr3 109078752 109079854 -50519929 - MTA_Mm-int LTR MaLR 0 1098 1 1 1417 3570 20 0 0 chr3 109079854 109080250 -50519533 - MTA_Mm LTR MaLR 0 396 1 1 1417 1141 55 7 7 chr3 109080589 109080735 -50519048 - B1_Mm SINE Alu 0 147 2 1 1417 445 234 272 25 chr3 109081481 109081639 -50518144 - B3 SINE B2 -7 209 13 1 1417 243 0 0 0 chr3 109081672 109081699 -50518084 + (CA)n Simple_repeat Simple_repeat 2 28 0 1 1417 354 270 34 136 chr3 109082254 109082430 -50517353 + LTR33B LTR ERVL 31 188 -315 1 1417 288 167 34 34 chr3 109082434 109082583 -50517200 + (CAGAGA)n Simple_repeat Simple_repeat 2 150 0 1 1417 205 75 50 0 chr3 109082666 109082706 -50517077 + (TC)n Simple_repeat Simple_repeat 1 42 0 1 1417 213 39 0 0 chr3 109083716 109083742 -50516041 + (T)n Simple_repeat Simple_repeat 1 26 0 1 1417 213 324 0 0 chr3 109083786 109083860 -50515923 + L2c LINE L2 3314 3387 0 1 1417 253 185 18 36 chr3 109083872 109083928 -50515855 + CT-rich Low_complexity Low_complexity 6 60 0 1 1417 270 136 0 0 chr3 109084066 109084110 -50515673 + (TG)n Simple_repeat Simple_repeat 1 44 0 1 1417 581 198 201 11 chr3 109084323 109084507 -50515276 - URR1B DNA MER1_type -5 220 2 1 1417 215 61 0 29 chr3 109085029 109085063 -50514720 + (TTA)n Simple_repeat Simple_repeat 3 35 0 1 1417 446 172 0 5 chr3 109085064 109085150 -50514633 - MTD LTR MaLR -28 391 270 1 1417 626 278 86 50 chr3 109085200 109085480 -50514303 + Lx8 LINE L1 7182 7471 -2 1 1417 270 312 0 0 chr3 109085504 109085568 -50514215 + B4A SINE B4 229 292 0 1 1417 720 302 28 0 chr3 109085927 109086139 -50513644 + B4A SINE B4 73 290 -2 1 1417 1096 240 97 30 chr3 109086402 109086733 -50513050 - MTEa LTR MaLR -12 367 15 1 1417 4503 153 66 23 chr3 109086887 109087814 -50511969 - RLTR25A LTR ERVK -136 967 1 1 1417 35 0 0 0 chr3 109088211 109088246 -50511537 + AT_rich Low_complexity Low_complexity 1 35 0 1 1417 223 54 0 51 chr3 109088275 109088314 -50511469 - B3A SINE B2 -160 38 2 1 1417 380 289 51 13 chr3 109088529 109088687 -50511096 - L1MB5 LINE L1 -136 6038 5875 1 1417 4063 34 28 8 chr3 109088693 109089192 -50510591 - L1Md_F2 LINE L1 -2 6580 6072 1 1417 627 14 0 0 chr3 109089324 109089396 -50510387 + (TC)n Simple_repeat Simple_repeat 1 72 0 1 1417 210 94 29 59 chr3 109090318 109090386 -50509397 + (TA)n Simple_repeat Simple_repeat 1 66 0 1 1417 691 119 119 0 chr3 109091032 109091158 -50508625 - B1_Mus1 SINE Alu -1 147 7 1 1417 21 0 0 0 chr3 109091171 109091192 -50508591 + AT_rich Low_complexity Low_complexity 1 21 0 1 1417 275 296 10 30 chr3 109091368 109091469 -50508314 - MLT1A1 LTR MaLR -2 406 308 1 1417 2129 109 45 0 chr3 109091600 109091913 -50507870 - ORR1A2 LTR MaLR 0 327 1 1 1417 621 340 51 58 chr3 109092554 109092938 -50506845 + MLT2B1 LTR ERVL 71 451 -69 1 1417 642 239 136 5 chr3 109092938 109093152 -50506631 - Tigger5 DNA MER2_type -1 2405 2164 1 1417 226 200 0 0 chr3 109093250 109093295 -50506488 + MLT2B1 LTR ERVL 519 563 0 1 1417 1382 138 51 8 chr3 109095992 109096226 -50503557 + Lx4A LINE L1 6815 7058 0 1 1417 23 0 0 0 chr3 109096227 109096250 -50503533 + AT_rich Low_complexity Low_complexity 1 23 0 1 1417 338 341 58 6 chr3 109097225 109097399 -50502384 - L1M5 LINE L1 -433 5691 5509 1 1417 446 159 0 11 chr3 109097627 109097716 -50502067 + CT-rich Low_complexity Low_complexity 2 89 0 1 1417 267 31 0 0 chr3 109098461 109098493 -50501290 + (TTA)n Simple_repeat Simple_repeat 2 33 0 1 1417 425 276 0 25 chr3 109099025 109099144 -50500639 - PB1D10 SINE Alu 0 117 2 1 1417 4990 80 19 4 chr3 109099172 109099852 -50499931 - L1_Mus3 LINE L1 -7 6631 5942 1 1417 5144 54 11 0 chr3 109100459 109101089 -50498694 + L1_Mus1 LINE L1 5931 6567 0 1 1417 267 308 0 0 chr3 109102462 109102527 -50497256 + (TG)n Simple_repeat Simple_repeat 1 65 0 1 1417 788 213 74 30 chr3 109102888 109103091 -50496692 + B3 SINE B2 1 212 -4 1 1417 272 292 34 103 chr3 109103144 109103407 -50496376 + Lx8 LINE L1 1716 1960 -4829 1 1417 1281 267 78 74 chr3 109103601 109104479 -50495304 + Lx8 LINE L1 5717 6562 -1553 1 1417 738 279 5 28 chr3 109104563 109104777 -50495006 + B3 SINE B2 8 216 0 1 1417 253 196 59 0 chr3 109105722 109105773 -50494010 - ID4_ SINE ID -4 79 26 1 1417 251 185 53 53 chr3 109105724 109105781 -50494002 - ID SINE ID -146 78 22 1 1417 246 217 0 0 chr3 109105915 109105975 -50493808 + L1ME2z LINE L1 6378 6437 -7 1 1417 1990 137 39 183 chr3 109106036 109106528 -50493255 - MTC LTR MaLR 0 421 1 1 1417 432 299 34 13 chr3 109106874 109107023 -50492760 - MER5A DNA MER1_type -1 188 37 1 1417 306 0 0 0 chr3 109107319 109107353 -50492430 + (CA)n Simple_repeat Simple_repeat 1 34 0 1 1417 900 53 0 0 chr3 109107353 109107466 -50492317 + (GA)n Simple_repeat Simple_repeat 2 115 0 1 1417 1086 108 0 0 chr3 109108991 109109148 -50490635 + B2_Mm2 SINE B2 2 158 -37 1 1417 243 0 0 0 chr3 109109149 109109176 -50490607 + (TAAA)n Simple_repeat Simple_repeat 3 29 0 1 1417 875 234 70 0 chr3 109109198 109109399 -50490384 - B3 SINE B2 0 216 2 1 1417 214 316 145 0 chr3 109109537 109109654 -50490129 + MIRb SINE MIR 25 158 -110 1 1417 195 42 0 0 chr3 109109952 109109976 -50489807 + (TG)n Simple_repeat Simple_repeat 2 25 0 1 1417 831 279 130 30 chr3 109109997 109110259 -50489524 - B4A SINE B4 -2 290 3 1 1417 280 280 38 8 chr3 109110788 109110907 -50488876 + MIRb SINE MIR 51 179 -89 1 1417 198 250 0 88 chr3 109111391 109111448 -50488335 - L2c LINE L2 -12 3375 3324 1 1417 241 246 16 0 chr3 109112779 109112840 -50486943 - MIRb SINE MIR -44 224 163 1 1417 2087 65 0 0 chr3 109113872 109114132 -50485651 - L1_Mus2 LINE L1 -677 5889 5630 1 1417 23 0 0 0 chr3 109114712 109114735 -50485048 + AT_rich Low_complexity Low_complexity 1 23 0 1 1417 621 282 135 19 chr3 109114886 109115197 -50484586 - MTEa LTR MaLR -13 366 20 1 1417 3143 122 39 0 chr3 109115449 109115916 -50483867 - Lx2 LINE L1 -4 6993 6509 1 1417 321 68 0 0 chr3 109116962 109117006 -50482777 + (TG)n Simple_repeat Simple_repeat 1 44 0 1 1417 369 0 0 0 chr3 109117006 109117046 -50482737 + (GA)n Simple_repeat Simple_repeat 1 41 0 1 1417 760 256 217 24 chr3 109118076 109118200 -50481583 + Lx8 LINE L1 7077 7236 -237 1 1417 210 37 0 0 chr3 109118200 109118227 -50481556 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 1417 760 256 217 24 chr3 109118227 109118434 -50481349 + Lx8 LINE L1 7237 7472 -1 1 1417 34 72 0 0 chr3 109118594 109118663 -50481120 + AT_rich Low_complexity Low_complexity 1 69 0 1 1417 903 201 6 0 chr3 109119185 109119349 -50480434 - B3 SINE B2 -2 214 50 1 1417 246 62 0 0 chr3 109119483 109119515 -50480268 + (TTAA)n Simple_repeat Simple_repeat 3 34 0 1 1417 190 89 67 0 chr3 109119841 109119886 -50479897 + T-rich Low_complexity Low_complexity 2 49 0 1 1417 315 0 0 0 chr3 109119930 109119965 -50479818 + (TG)n Simple_repeat Simple_repeat 2 36 0 1 1417 890 71 0 16 chr3 109120300 109120428 -50479355 + (TTTTC)n Simple_repeat Simple_repeat 5 130 0 1 1417 270 0 0 0 chr3 109120428 109120458 -50479325 + (TC)n Simple_repeat Simple_repeat 2 31 0 1 1417 12661 60 1 0 chr3 109120458 109122025 -50477758 + L1_Mm LINE L1 4018 5586 -297 1 1417 8325 35 11 3 chr3 109122025 109123013 -50476770 + L1Md_F2 LINE L1 5587 6582 0 1 1417 4651 140 5 48 chr3 109123013 109123267 -50476516 - L1_Mm LINE L1 -939 4944 4719 1 1417 2380 58 19 7 chr3 109123267 109123577 -50476206 - L1Md_F3 LINE L1 0 6584 6271 1 1417 4651 140 5 48 chr3 109123577 109124153 -50475630 - L1_Mm LINE L1 -1165 4718 4148 1 1417 201 309 11 116 chr3 109124324 109124419 -50475364 + MIRb SINE MIR 34 118 -150 1 1417 1548 120 189 3 chr3 109124424 109124709 -50475074 - ORR1A0 LTR MaLR -8 338 1 1 1417 21 36 0 0 chr3 109125445 109125473 -50474310 + AT_rich Low_complexity Low_complexity 1 28 0 1 1417 460 268 11 39 chr3 109125862 109126041 -50473742 + G-rich Low_complexity Low_complexity 3 176 0 1 1417 287 274 10 21 chr3 109126652 109126749 -50473034 + GA-rich Low_complexity Low_complexity 4 99 0 1 1417 999 61 0 0 chr3 109130667 109130798 -50468985 + (TTTC)n Simple_repeat Simple_repeat 4 134 0 1 1417 409 228 188 0 chr3 109130822 109130923 -50468860 + PB1D9 SINE Alu 1 120 0 1 1417 215 333 30 60 chr3 109131355 109131489 -50468294 + B4A SINE B4 2 131 -161 1 1417 1510 259 58 52 chr3 109131660 109132251 -50467532 - L1MA7 LINE L1 -13 6278 5685 1 1417 893 165 152 4 chr3 109132259 109132490 -50467293 + RMER4B LTR ERVK 26 290 -295 1 1417 224 71 0 0 chr3 109132490 109132518 -50467265 + (CTG)n Simple_repeat Simple_repeat 3 30 0 1 1417 969 168 0 0 chr3 109132518 109132697 -50467086 + (TTG)n Simple_repeat Simple_repeat 1 179 0 1 1417 990 167 0 0 chr3 109132673 109132853 -50466930 + (CTG)n Simple_repeat Simple_repeat 1 180 0 2 1417 753 194 0 0 chr3 109132872 109133027 -50466756 + (CTG)n Simple_repeat Simple_repeat 1 155 0 2 1417 760 194 184 44 chr3 109133029 109133317 -50466466 + RMER4B LTR ERVK 322 574 -11 1 1417 447 19 0 0 chr3 109133421 109133473 -50466310 + (TA)n Simple_repeat Simple_repeat 2 53 0 2 1417 589 219 33 8 chr3 109133509 109133629 -50466154 - B4 SINE B4 0 292 170 2 1417 360 0 0 0 chr3 109133641 109133681 -50466102 + (TC)n Simple_repeat Simple_repeat 1 40 0 2 1417 387 0 0 0 chr3 109133681 109133723 -50466060 + (CA)n Simple_repeat Simple_repeat 1 43 0 2 1417 600 205 116 4 chr3 109133808 109134035 -50465748 - L1MA7 LINE L1 -778 5522 5260 1 1417 402 21 0 0 chr3 109134600 109134647 -50465136 + (TC)n Simple_repeat Simple_repeat 2 48 0 2 1417 2925 92 13 0 chr3 109134647 109135040 -50464743 + MTB LTR MaLR 2 399 -1 2 1417 459 0 0 0 chr3 109135040 109135091 -50464692 + (TA)n Simple_repeat Simple_repeat 2 52 0 2 1417 22 0 0 0 chr3 109135091 109135113 -50464670 + AT_rich Low_complexity Low_complexity 1 22 0 2 1417 230 237 16 33 chr3 109135121 109135182 -50464601 + tRNA-Ala-GCA tRNA tRNA 2 61 -14 2 1417 264 234 31 0 chr3 109135133 109135197 -50464586 + ID4 SINE ID 18 83 0 2 1417 212 366 0 0 chr3 109135658 109135740 -50464043 + (TG)n Simple_repeat Simple_repeat 1 82 0 2 1417 262 300 14 14 chr3 109136347 109136421 -50463362 - ID4_ SINE ID -9 74 1 2 1417 289 328 17 26 chr3 109136443 109136559 -50463224 - PB1 SINE Alu -4 123 9 2 1417 1453 134 70 88 chr3 109136614 109136941 -50462842 + ORR1B1 LTR MaLR 41 361 -33 2 1417 2944 151 30 34 chr3 109136941 109137503 -50462280 - RLTR20B2 LTR ERVK 0 560 1 2 1417 235 337 39 14 chr3 109137845 109138026 -50461757 + MIR SINE MIR 56 252 -16 2 1417 624 87 0 0 chr3 109138362 109138454 -50461329 + (TCCA)n Simple_repeat Simple_repeat 3 94 0 2 1417 1119 253 95 13 chr3 109138472 109138776 -50461007 + ORR1E LTR MaLR 26 354 -5 2 1417 324 336 8 8 chr3 109139046 109139163 -50460620 - RLTR20B1 LTR ERVK 0 563 447 2 1417 2364 116 5 26 chr3 109139199 109139581 -50460202 - Lx LINE L1 0 6654 6281 2 1417 248 114 23 0 chr3 109139581 109139625 -50460158 - RLTR20B1 LTR ERVK -115 445 401 2 1417 317 288 29 9 chr3 109139633 109139738 -50460045 + RLTR20B1 LTR ERVK 457 563 0 2 1417 22 0 0 0 chr3 109140332 109140354 -50459429 + AT_rich Low_complexity Low_complexity 1 22 0 2 1417 659 116 0 9 chr3 109140411 109140524 -50459259 + (TCC)n Simple_repeat Simple_repeat 3 114 0 2 1417 236 288 76 53 chr3 109140921 109140986 -50458797 - MER5A1 DNA MER1_type -31 135 73 2 1417 4916 59 6 6 chr3 109140986 109141615 -50458168 - L1_Mus3 LINE L1 -4 6634 6006 2 1417 236 288 76 53 chr3 109141615 109141681 -50458102 - MER5A1 DNA MER1_type -94 72 1 2 1417 293 344 63 8 chr3 109141702 109141828 -50457955 - MIRb SINE MIR -89 179 47 2 1417 225 322 0 94 chr3 109142043 109142170 -50457613 + Tigger7 DNA MER2_type 1 115 -2376 2 1417 363 44 0 0 chr3 109142597 109142642 -50457141 + (CAG)n Simple_repeat Simple_repeat 1 45 0 2 1417 21 0 0 0 chr3 109143477 109143498 -50456285 + GC_rich Low_complexity Low_complexity 1 21 0 2 1417 21 0 0 0 chr3 109143745 109143766 -50456017 + GC_rich Low_complexity Low_complexity 1 21 0 2 1417 21 0 0 0 chr3 109143918 109143939 -50455844 + GC_rich Low_complexity Low_complexity 1 21 0 2 1417 279 0 0 0 chr3 109144444 109144475 -50455308 + (TG)n Simple_repeat Simple_repeat 1 31 0 2 1417 566 101 0 20 chr3 109145743 109145844 -50453939 + (TTCC)n Simple_repeat Simple_repeat 3 101 0 2 1417 345 140 0 0 chr3 109147161 109147218 -50452565 + (TG)n Simple_repeat Simple_repeat 2 58 0 2 1417 261 0 0 0 chr3 109147697 109147726 -50452057 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 2 1417 263 339 47 79 chr3 109148358 109148611 -50451172 - L2a LINE L2 -237 3189 2945 2 1417 467 318 162 45 chr3 109148618 109149365 -50450418 - L2a LINE L2 -771 2648 1815 2 1417 289 308 82 151 chr3 109149367 109149438 -50450345 - Kanga1 DNA Tc2 -101 1644 1579 2 1417 467 212 34 50 chr3 109149438 109149557 -50450226 + PB1D10 SINE Alu 1 117 0 2 1417 289 308 82 151 chr3 109149557 109149837 -50449946 - Kanga1 DNA Tc2 -167 1578 1317 2 1417 501 17 0 0 chr3 109150334 109150392 -50449391 + (TC)n Simple_repeat Simple_repeat 1 58 0 2 1417 573 115 0 0 chr3 109150392 109150479 -50449304 + (TA)n Simple_repeat Simple_repeat 1 87 0 2 1417 225 0 0 0 chr3 109150494 109150519 -50449264 + (CA)n Simple_repeat Simple_repeat 2 26 0 2 1417 414 306 194 6 chr3 109151183 109151534 -50448249 + L2 LINE L2 938 1354 -2065 2 1417 327 286 21 57 chr3 109151737 109151878 -50447905 + Charlie1a DNA MER1_type 1319 1454 -1 2 1417 264 333 31 50 chr3 109151878 109152039 -50447744 + L2 LINE L2 1386 1543 -1876 2 1417 630 80 0 57 chr3 109152040 109152199 -50447584 + (CCTG)n Simple_repeat Simple_repeat 2 151 0 2 1417 3516 35 0 0 chr3 109152758 109153164 -50446619 - L1Md_F2 LINE L1 -10 6572 6167 2 1417 207 358 10 31 chr3 109154900 109154998 -50444785 + MIR3 SINE MIR 3 98 -110 2 1417 202 328 60 38 chr3 109155126 109155259 -50444524 + MIRb SINE MIR 89 224 -44 2 1417 280 356 26 33 chr3 109155310 109155461 -50444322 - MIRc SINE MIR -89 179 30 2 1417 4327 23 12 0 chr3 109157380 109157867 -50441916 - MT2_Mm LTR ERVL 0 493 1 2 1417 197 318 150 38 chr3 109158896 109159056 -50440727 + MIRb SINE MIR 53 230 -38 2 1417 978 157 0 0 chr3 109159531 109159678 -50440105 - B1_Mus1 SINE Alu -1 147 1 2 1417 444 275 25 16 chr3 109159716 109159838 -50439945 + ID_B1 SINE B4 81 203 -21 2 1417 374 285 93 54 chr3 109159860 109160091 -50439692 + B4A SINE B4 2 218 -74 2 1417 207 0 0 0 chr3 109160663 109160686 -50439097 + (A)n Simple_repeat Simple_repeat 1 23 0 2 1417 675 148 40 24 chr3 109161273 109161398 -50438385 - B3 SINE B2 -87 129 3 2 1417 244 296 0 38 chr3 109161608 109161791 -50437992 + (CCTTG)n Simple_repeat Simple_repeat 2 177 0 2 1417 588 204 44 0 chr3 109164056 109164169 -50435614 + PB1D9 SINE Alu 3 120 0 2 1417 679 256 133 7 chr3 109165307 109165703 -50434080 - L1MB3 LINE L1 -1 6179 5741 2 1417 216 329 13 0 chr3 109166008 109166087 -50433696 + CT-rich Low_complexity Low_complexity 4 83 0 2 1417 243 88 0 0 chr3 109166094 109166128 -50433655 + (TCCCC)n Simple_repeat Simple_repeat 5 38 0 2 1417 563 179 17 25 chr3 109166132 109166252 -50433531 - B1_Mus1 SINE Alu -21 127 9 2 1417 234 105 0 0 chr3 109166387 109166425 -50433358 + (GAAAA)n Simple_repeat Simple_repeat 2 39 0 2 1417 623 376 53 64 chr3 109166556 109167014 -50432769 + LTR16E2 LTR ERVL 12 463 -105 2 1417 1081 179 92 0 chr3 109167014 109167221 -50432562 + URR1A DNA MER1_type 1 226 0 2 1417 623 376 53 64 chr3 109167221 109167325 -50432458 + LTR16E2 LTR ERVL 464 568 0 2 1417 768 285 19 111 chr3 109167483 109167799 -50431984 - B4 SINE B4 -1 291 5 2 1417 603 307 54 89 chr3 109167861 109168197 -50431586 - ORR1E LTR MaLR -35 324 1 2 1417 263 238 63 0 chr3 109169821 109169884 -50429899 - MamRep1161 DNA TcMar -830 127 61 2 1417 4216 43 2 8 chr3 109169894 109170381 -50429402 - L1_Mus1 LINE L1 0 6567 6084 2 1417 4059 42 0 2 chr3 109170381 109170864 -50428919 + L1_Mus1 LINE L1 5600 6081 -486 2 1417 363 44 0 0 chr3 109172246 109172291 -50427492 + (CA)n Simple_repeat Simple_repeat 2 46 0 2 1417 2727 192 90 8 chr3 109172478 109173002 -50426781 - Lx5 LINE L1 -209 6841 6275 2 1417 415 221 40 40 chr3 109172994 109173145 -50426638 + Lx4B LINE L1 6904 7054 -4 2 1417 2608 294 91 20 chr3 109173208 109174234 -50425549 - Lx8 LINE L1 -3 7470 6373 2 1417 439 70 42 0 chr3 109174501 109174572 -50425211 + (TCTCC)n Simple_repeat Simple_repeat 4 77 0 2 1417 333 0 0 0 chr3 109174802 109174839 -50424944 + (T)n Simple_repeat Simple_repeat 1 37 0 2 1417 349 212 37 24 chr3 109175231 109175313 -50424470 - B1F SINE Alu 0 149 67 2 1417 498 282 81 0 chr3 109175242 109175366 -50424417 - ID_B1 SINE B4 -9 215 82 2 1417 213 196 0 0 chr3 109175860 109175906 -50423877 + (TG)n Simple_repeat Simple_repeat 1 46 0 2 1417 486 0 0 0 chr3 109176300 109176354 -50423429 + (GA)n Simple_repeat Simple_repeat 1 54 0 2 1417 315 0 0 0 chr3 109176402 109176437 -50423346 + (TC)n Simple_repeat Simple_repeat 2 36 0 2 1417 234 0 0 0 chr3 109176437 109176462 -50423321 + (TG)n Simple_repeat Simple_repeat 1 26 0 2 1417 198 0 0 0 chr3 109176462 109176484 -50423299 + (GA)n Simple_repeat Simple_repeat 1 22 0 2 1417 571 176 72 27 chr3 109176487 109176598 -50423185 - B3A SINE B2 -82 116 1 2 1417 4946 48 55 0 chr3 109176866 109177490 -50422293 - L1_Mus3 LINE L1 -43 6595 5938 2 1417 2671 104 0 3 chr3 109177491 109177849 -50421934 - L1_Mm LINE L1 -122 5761 5405 2 1417 429 326 41 72 chr3 109177860 109178055 -50421728 - MLT1A0 LTR MaLR -72 293 105 2 1417 33 43 0 0 chr3 109178320 109178367 -50421416 + AT_rich Low_complexity Low_complexity 1 47 0 2 1417 368 266 47 0 chr3 109178477 109178605 -50421178 + L1MA10 LINE L1 6189 6322 -12 2 1417 721 301 83 29 chr3 109178653 109178930 -50420853 - B4A SINE B4 0 292 1 2 1417 315 381 66 57 chr3 109180272 109180500 -50419283 - B4A SINE B4 -61 231 2 2 1417 296 310 0 0 chr3 109180861 109180961 -50418822 + (TA)n Simple_repeat Simple_repeat 1 100 0 2 1417 346 241 38 0 chr3 109181126 109181205 -50418578 + ID SINE ID 2 83 -141 2 1417 229 301 29 19 chr3 109181205 109181231 -50418552 + BC1_Mm scRNA scRNA 2 107 -45 2 177 1027 192 114 0 chr3 109182806 109182999 -50416784 - B3 SINE B2 0 216 2 2 1418 372 331 110 39 chr3 109183481 109183736 -50416047 - RLTR12B LTR ERVK -250 278 6 2 1418 565 181 0 14 chr3 109183765 109183905 -50415878 + CT-rich Low_complexity Low_complexity 3 140 0 2 1418 1026 140 0 0 chr3 109183905 109184084 -50415699 + (TC)n Simple_repeat Simple_repeat 2 180 0 2 1418 849 20 0 0 chr3 109184084 109184182 -50415601 + (TTTC)n Simple_repeat Simple_repeat 1 99 0 2 1418 189 375 106 0 chr3 109184672 109184776 -50415007 + L2b LINE L2 3259 3373 -2 2 1418 948 84 0 0 chr3 109189851 109189982 -50409801 + (TCTCC)n Simple_repeat Simple_repeat 3 133 0 2 1418 585 0 0 0 chr3 109189982 109190047 -50409736 + (TTCC)n Simple_repeat Simple_repeat 4 68 0 3 1418 480 35 0 0 chr3 109190047 109190105 -50409678 + (TC)n Simple_repeat Simple_repeat 2 59 0 3 1418 257 306 54 36 chr3 109190108 109190220 -50409563 - PB1D10 SINE Alu -1 116 3 3 1418 393 86 0 0 chr3 109190243 109190301 -50409482 + (CA)n Simple_repeat Simple_repeat 2 59 0 3 1418 787 251 94 101 chr3 109190311 109190599 -50409184 + B4 SINE B4 3 288 -4 3 1418 1127 260 35 73 chr3 109190954 109191406 -50408377 - Lx7 LINE L1 -329 7367 6933 3 1418 803 316 18 14 chr3 109191413 109191699 -50408084 + Lx7 LINE L1 6654 6940 -756 3 1418 1097 143 93 0 chr3 109192150 109192332 -50407451 - URR1A DNA MER1_type 0 226 28 3 1418 180 279 129 48 chr3 109192503 109192650 -50407133 + MIR SINE MIR 68 226 -36 3 1418 449 247 7 0 chr3 109193529 109193679 -50406104 + (TG)n Simple_repeat Simple_repeat 2 152 0 3 1418 7238 84 48 33 chr3 109193763 109194782 -50405001 - Lx3_Mus LINE L1 0 7009 5976 3 1418 757 192 99 0 chr3 109195056 109195228 -50404555 + URR1A DNA MER1_type 35 223 -3 3 1418 290 350 49 40 chr3 109195228 109195467 -50404316 - ORSL-2b DNA Tip100 -29 479 239 3 1418 354 325 77 13 chr3 109195787 109195943 -50403840 + MIR SINE MIR 19 184 -78 3 1418 360 250 0 0 chr3 109196045 109196117 -50403666 - ID4_ SINE ID -6 77 6 3 1418 469 124 17 17 chr3 109196416 109196531 -50403252 + (TCTCTG)n Simple_repeat Simple_repeat 2 116 0 3 1418 3847 34 5 14 chr3 109196927 109197372 -50402411 - L1Md_A LINE L1 0 6582 6142 3 1418 1041 140 0 0 chr3 109197615 109197834 -50401949 + (TCCC)n Simple_repeat Simple_repeat 1 219 0 3 1418 1207 88 0 0 chr3 109197877 109198024 -50401759 - B1_Mus1 SINE Alu 0 148 2 3 1418 3556 212 42 51 chr3 109198592 109199433 -50400350 - Lx5 LINE L1 0 7050 6218 3 1418 369 221 232 21 chr3 109199428 109199618 -50400165 + Lx5 LINE L1 5995 6224 -826 3 1418 1601 193 63 56 chr3 109200094 109200483 -50399300 + MTD LTR MaLR 3 404 -15 3 1418 1439 268 39 34 chr3 109201884 109202293 -50397490 - Lx8 LINE L1 -826 6647 6237 3 1418 468 397 43 7 chr3 109202856 109203135 -50396648 - MER119 DNA MER1_type -294 289 1 3 1418 219 303 45 0 chr3 109204489 109204555 -50395228 + MIR SINE MIR 46 114 -94 3 1418 187 288 146 35 chr3 109204787 109204931 -50394852 + L2c LINE L2 3224 3383 -4 3 1418 1297 234 111 26 chr3 109205420 109205797 -50393986 - Lx8 LINE L1 -60 7413 7005 3 1418 269 148 0 0 chr3 109206269 109206323 -50393460 + Charlie16a DNA MER1_type 139 192 -150 3 1418 221 253 195 0 chr3 109206335 109206422 -50393361 + ID_B1 SINE B4 91 194 -30 3 1418 210 144 32 43 chr3 109206547 109206641 -50393142 + (TATAA)n Simple_repeat Simple_repeat 5 97 0 3 1418 611 67 11 0 chr3 109207705 109207794 -50391989 + (TCTA)n Simple_repeat Simple_repeat 4 93 0 3 1418 1108 140 17 6 chr3 109207979 109208159 -50391624 + URR1B DNA MER1_type 44 225 0 3 1418 189 0 0 0 chr3 109208479 109208500 -50391283 + (TTATA)n Simple_repeat Simple_repeat 5 25 0 3 1418 647 261 71 25 chr3 109209601 109209841 -50389942 + L1M2 LINE L1 5568 5818 -479 3 1418 306 67 0 0 chr3 109210060 109210105 -50389678 + (TCTCTG)n Simple_repeat Simple_repeat 2 46 0 3 1418 313 141 28 0 chr3 109210105 109210176 -50389607 + (TA)n Simple_repeat Simple_repeat 1 73 0 3 1418 21 36 0 0 chr3 109210366 109210394 -50389389 + AT_rich Low_complexity Low_complexity 1 28 0 3 1418 252 211 40 0 chr3 109210421 109210497 -50389286 - Lx6 LINE L1 0 7460 7382 3 1418 603 258 0 0 chr3 109210499 109210623 -50389160 + Lx7 LINE L1 6239 6362 -1334 3 1418 279 79 0 0 chr3 109210983 109211021 -50388762 + (GAAA)n Simple_repeat Simple_repeat 4 41 0 3 1418 815 312 66 58 chr3 109212074 109212192 -50387591 - L1_Mur3 LINE L1 -430 5450 5348 3 1418 757 32 0 0 chr3 109212192 109212285 -50387498 + L1_Mus1 LINE L1 6475 6567 0 3 1418 815 312 66 58 chr3 109212285 109212663 -50387120 - L1_Mur3 LINE L1 -533 5347 4950 3 1418 704 18 0 58 chr3 109212982 109213103 -50386680 + (TCCCC)n Simple_repeat Simple_repeat 3 116 0 3 1418 351 0 0 0 chr3 109213445 109213484 -50386299 + (TG)n Simple_repeat Simple_repeat 2 40 0 3 1418 238 232 256 0 chr3 109213498 109213580 -50386203 - B2_Mm2 SINE B2 -70 125 23 3 1418 223 309 21 106 chr3 109213580 109213674 -50386109 + B4A SINE B4 61 146 -146 3 1418 247 291 18 0 chr3 109213682 109213737 -50386046 + RSINE1 SINE B4 78 133 -32 3 1418 296 83 21 0 chr3 109213792 109213840 -50385943 + (CAA)n Simple_repeat Simple_repeat 2 50 0 3 1418 442 243 38 28 chr3 109214220 109214326 -50385457 + RSINE1 SINE B4 11 117 -48 3 1418 419 224 81 10 chr3 109214333 109214432 -50385351 - Lx8 LINE L1 -237 7236 7131 3 1418 252 312 116 34 chr3 109215078 109215224 -50384559 + MIRb SINE MIR 34 191 -77 3 1418 3687 23 4 137 chr3 109215660 109216163 -50383620 - RLTR10C LTR ERVK 0 436 1 3 1418 22 0 0 0 chr3 109216420 109216442 -50383341 + AT_rich Low_complexity Low_complexity 1 22 0 3 1418 241 273 79 57 chr3 109216475 109216615 -50383168 - MARNA DNA Mariner -268 318 176 3 1418 29921 104 6 27 chr3 109217662 109221583 -50378200 + L1_Mus2 LINE L1 1489 5322 -561 3 1418 1142 88 0 7 chr3 109221583 109221732 -50378051 - B1_Mus1 SINE Alu 0 148 1 3 1418 29921 86 3 6 chr3 109221732 109222981 -50376802 + L1_Mus2 LINE L1 5323 6564 -2 3 1418 555 242 45 30 chr3 109224558 109224690 -50375093 - ID_B1 SINE B4 0 224 91 3 1418 2749 71 3 6 chr3 109224748 109225101 -50374682 + L1_Mus1 LINE L1 6216 6567 0 3 1418 584 310 0 7 chr3 109225189 109225335 -50374448 + B1F SINE Alu 1 145 -4 3 1418 303 274 36 73 chr3 109225443 109225608 -50374175 + L2 LINE L2 1593 1751 -1668 3 1418 676 185 0 15 chr3 109225777 109225914 -50373869 + URR1B DNA MER1_type 91 225 0 3 1418 237 272 81 87 chr3 109226046 109226195 -50373588 + L2 LINE L2 2695 2842 -577 3 1418 276 296 12 36 chr3 109227054 109227138 -50372645 - ID4_ SINE ID 0 83 2 3 1418 283 250 67 0 chr3 109227774 109227834 -50371949 + RSINE1 SINE B4 73 136 -29 3 1418 728 240 137 0 chr3 109228103 109228278 -50371505 - B3 SINE B2 -12 204 6 3 1418 182 37 0 36 chr3 109229484 109229512 -50370271 + (TTA)n Simple_repeat Simple_repeat 3 29 0 3 1418 244 344 176 23 chr3 109229566 109229697 -50370086 - MIRb SINE MIR -76 192 42 3 1418 479 16 32 0 chr3 109229726 109229789 -50369994 + (CATAA)n Simple_repeat Simple_repeat 3 67 0 3 1418 548 291 27 50 chr3 109230304 109230525 -50369258 + RMER15 LTR ERVL 347 562 -13 3 1418 1554 318 110 16 chr3 109230675 109231386 -50368397 + RMER15-int LTR ERVL 139 916 -4083 3 1418 254 322 95 43 chr3 109231585 109231796 -50367987 - MIRc SINE MIR -1 267 46 3 1418 180 0 0 0 chr3 109231890 109231910 -50367873 + (TTG)n Simple_repeat Simple_repeat 2 21 0 3 1418 204 306 101 10 chr3 109233483 109233582 -50366201 + MIRc SINE MIR 44 151 -117 3 1418 227 300 0 48 chr3 109233706 109233790 -50365993 - ID4_ SINE ID 0 83 4 3 1418 409 307 29 14 chr3 109233827 109233966 -50365817 - B1F SINE Alu -8 141 1 3 1418 1170 78 0 0 chr3 109234643 109234823 -50364960 + (CA)n Simple_repeat Simple_repeat 1 180 0 3 1418 204 37 0 0 chr3 109234831 109234839 -50364944 + (TC)n Simple_repeat Simple_repeat 2 9 0 3 1418 333 123 0 0 chr3 109234839 109234904 -50364879 + (CA)n Simple_repeat Simple_repeat 1 65 0 3 1418 204 37 0 0 chr3 109234904 109234922 -50364861 + (TC)n Simple_repeat Simple_repeat 2 19 0 3 1418 198 0 0 0 chr3 109234932 109234954 -50364829 + (TG)n Simple_repeat Simple_repeat 2 23 0 3 1418 378 0 0 0 chr3 109237080 109237122 -50362661 + (TG)n Simple_repeat Simple_repeat 1 42 0 3 1418 749 246 54 142 chr3 109237316 109237859 -50361924 - RCHARR1 DNA MER1_type 0 974 186 3 1418 279 330 41 0 chr3 109238215 109238312 -50361471 + Tigger7 DNA MER2_type 18 118 -2373 3 1418 486 282 166 0 chr3 109238452 109238615 -50361168 + Tigger7 DNA MER2_type 126 315 -2176 3 1418 814 293 65 6 chr3 109238611 109238934 -50360849 - MER44C DNA MER2_type -12 721 380 3 1418 358 63 63 0 chr3 109238934 109239013 -50360770 + (TTTG)n Simple_repeat Simple_repeat 2 85 0 3 1418 1161 108 0 0 chr3 109239013 109239161 -50360622 - B1_Mus1 SINE Alu 0 148 1 3 1418 1107 308 30 81 chr3 109239170 109239566 -50360217 - MER44C DNA MER2_type -352 381 6 3 1418 249 207 46 58 chr3 109239595 109239682 -50360101 + Tigger7 DNA MER2_type 350 435 -2056 3 1418 424 290 99 37 chr3 109239701 109239976 -50359807 + Tigger7 DNA MER2_type 424 759 -1732 3 1418 216 184 0 0 chr3 109240483 109240532 -50359251 + T-rich Low_complexity Low_complexity 1 49 0 3 1418 2447 144 5 29 chr3 109240985 109241393 -50358390 + MTB_Mm LTR MaLR 10 407 0 3 1418 229 294 44 0 chr3 109241906 109241974 -50357809 - MIRb SINE MIR -81 187 117 3 1418 432 163 0 0 chr3 109243629 109243715 -50356068 + (TG)n Simple_repeat Simple_repeat 2 87 0 3 1418 608 0 14 0 chr3 109244363 109244435 -50355348 + (TTTTA)n Simple_repeat Simple_repeat 2 74 0 3 1418 575 200 0 9 chr3 109244440 109244546 -50355237 - B1_Mur1 SINE Alu -5 144 40 3 1418 441 0 0 0 chr3 109244861 109244910 -50354873 + (TC)n Simple_repeat Simple_repeat 2 50 0 3 1418 476 258 44 36 chr3 109244911 109245048 -50354735 - B1F SINE Alu -7 142 5 3 1418 22 88 0 0 chr3 109245094 109245151 -50354632 + AT_rich Low_complexity Low_complexity 1 57 0 3 1418 598 262 209 0 chr3 109245504 109245676 -50354107 - B3 SINE B2 -8 208 1 3 1418 3852 197 57 141 chr3 109245852 109246958 -50352825 - RMER1B Other Other -9 1057 45 3 1418 22 56 0 0 chr3 109247461 109247497 -50352286 + AT_rich Low_complexity Low_complexity 1 36 0 3 1418 26 50 0 0 chr3 109247611 109247651 -50352132 + AT_rich Low_complexity Low_complexity 1 40 0 3 1418 4317 28 0 8 chr3 109247984 109248458 -50351325 - L1Md_F2 LINE L1 -15 6567 6098 3 1418 6679 56 1 0 chr3 109248458 109249295 -50350488 + L1_Mm LINE L1 3841 4678 -1205 3 1418 186 331 62 46 chr3 109251331 109251461 -50348322 + L3 LINE CR1 4241 4372 -117 3 1418 1642 32 0 0 chr3 109251858 109252045 -50347738 - L1_Mus2 LINE L1 0 6566 6380 3 1418 207 167 0 0 chr3 109252903 109252945 -50346838 + GA-rich Low_complexity Low_complexity 6 47 0 3 1418 417 236 0 0 chr3 109253773 109253879 -50345904 + CT-rich Low_complexity Low_complexity 3 108 0 4 1418 273 314 107 10 chr3 109253879 109253982 -50345801 - PB1D10 SINE Alu 0 117 5 4 1418 868 190 146 5 chr3 109256123 109256308 -50343475 - RLTR17 LTR ERVK -1 691 481 4 1418 736 344 66 27 chr3 109258268 109258752 -50341031 + MLT1D LTR MaLR 1 503 -2 4 1418 195 355 49 68 chr3 109259453 109259616 -50340167 - L3 LINE CR1 -969 3520 3361 4 1418 1008 211 5 10 chr3 109260078 109260279 -50339504 + MTD LTR MaLR 5 204 -215 4 1418 34016 37 43 0 chr3 109260296 109264578 -50335205 + L1Md_F2 LINE L1 1119 5586 -297 4 1418 8551 45 1 4 chr3 109264579 109265595 -50334188 + L1Md_F2 LINE L1 5588 6582 0 4 1418 460 254 40 4 chr3 109265631 109265778 -50334005 + MTD LTR MaLR 228 414 -5 4 1418 1617 179 169 8 chr3 109267244 109267605 -50332178 + MTD LTR MaLR 1 419 0 4 1418 225 352 0 0 chr3 109267617 109267688 -50332095 + ID4_ SINE ID 2 72 -11 4 1418 1123 107 11 0 chr3 109268378 109268556 -50331227 + (TCCC)n Simple_repeat Simple_repeat 1 180 0 4 1418 1088 96 0 0 chr3 109268787 109268933 -50330850 - MusHAL1 LINE L1 -1032 1680 1535 4 1418 488 220 6 0 chr3 109269082 109269241 -50330542 + (TG)n Simple_repeat Simple_repeat 1 160 0 4 1418 804 243 82 148 chr3 109269241 109269460 -50330323 - B4A SINE B4 0 292 80 4 1418 1380 160 14 19 chr3 109269460 109269670 -50330113 - B3 SINE B2 -6 210 2 4 1418 804 243 82 148 chr3 109269670 109269754 -50330029 - B4A SINE B4 -213 79 9 4 1418 22 88 0 0 chr3 109269921 109269978 -50329805 + AT_rich Low_complexity Low_complexity 1 57 0 4 1418 360 345 46 10 chr3 109272075 109272271 -50327512 - MIRb SINE MIR -41 227 25 4 1418 180 0 0 0 chr3 109272271 109272291 -50327492 + (T)n Simple_repeat Simple_repeat 1 20 0 4 1418 257 301 115 54 chr3 109272352 109272482 -50327301 - LTR75 LTR ERVL -324 238 101 4 1418 288 304 46 97 chr3 109272731 109272906 -50326877 - MLT1N2 LTR MaLR -337 225 60 4 1418 540 0 0 0 chr3 109273851 109273911 -50325872 + (GA)n Simple_repeat Simple_repeat 1 60 0 4 1418 465 277 528 5 chr3 109273912 109274093 -50325690 - B4A SINE B4 -16 276 1 4 1418 328 281 12 0 chr3 109274344 109274426 -50325357 + RSINE1 SINE B4 3 85 -80 4 1418 7447 106 28 9 chr3 109274496 109276297 -50323486 + L1_Mus3 LINE L1 4795 6638 0 4 1418 488 270 33 127 chr3 109276407 109276619 -50323164 - ORR1E LTR MaLR -6 353 162 4 1418 355 306 131 50 chr3 109278818 109279100 -50320683 - ORR1E LTR MaLR -40 319 15 4 1418 601 157 7 7 chr3 109279885 109280020 -50319763 + (CA)n Simple_repeat Simple_repeat 2 136 0 4 1418 207 173 0 0 chr3 109280033 109280085 -50319698 + CT-rich Low_complexity Low_complexity 1 52 0 4 1418 247 364 0 28 chr3 109280127 109280305 -50319478 + L1M5 LINE L1 5591 5763 -361 4 1418 353 318 11 0 chr3 109280588 109280676 -50319107 + PB1D7 SINE Alu 2 90 -30 4 1418 409 289 106 73 chr3 109281728 109281777 -50318006 + B4 SINE B4 41 220 -67 4 1418 739 224 0 0 chr3 109281777 109281902 -50317881 + B1_Mur3 SINE Alu 1 125 -24 4 1418 568 202 0 0 chr3 109282498 109282597 -50317186 + B1_Mur2 SINE Alu 41 139 -10 4 1418 735 44 0 0 chr3 109282598 109282689 -50317094 + (CAAGA)n Simple_repeat Simple_repeat 1 91 0 4 1418 626 47 24 0 chr3 109283057 109283142 -50316641 + (TTTC)n Simple_repeat Simple_repeat 2 88 0 4 1418 490 330 15 55 chr3 109283858 109284060 -50315723 + B3A SINE B2 4 197 -1 4 1418 704 108 8 0 chr3 109284607 109284737 -50315046 + (TG)n Simple_repeat Simple_repeat 1 131 0 4 1418 323 195 71 35 chr3 109285517 109285602 -50314181 - PB1D7 SINE Alu -21 99 12 4 1418 5730 80 6 106 chr3 109286261 109287123 -50312660 + L1_Mus3 LINE L1 5858 6633 -5 4 1418 582 264 104 0 chr3 109287223 109287367 -50312416 + RSINE1 SINE B4 5 163 -2 4 1418 253 136 49 33 chr3 109288822 109288883 -50310900 + (TCTCTG)n Simple_repeat Simple_repeat 1 62 0 4 1418 330 91 0 0 chr3 109288883 109288938 -50310845 + (TCTG)n Simple_repeat Simple_repeat 4 58 0 4 1418 245 219 26 64 chr3 109288942 109289020 -50310763 - ID2 SINE ID -6 77 3 4 1418 301 346 67 12 chr3 109289153 109289317 -50310466 + MER33 DNA MER1_type 27 199 -125 4 1418 1256 168 44 53 chr3 109290398 109290625 -50309158 + URR1B DNA MER1_type 1 225 0 4 1418 23 0 0 0 chr3 109294237 109294260 -50305523 + AT_rich Low_complexity Low_complexity 1 23 0 4 1418 307 301 83 51 chr3 109295308 109295525 -50304258 - L1MA8 LINE L1 0 6291 6068 4 1418 315 362 57 31 chr3 109296178 109296372 -50303411 - MIR SINE MIR -56 206 8 4 1418 6822 54 23 4 chr3 109296496 109297310 -50302473 - L1Md_F2 LINE L1 0 6582 5753 4 1418 23 33 0 0 chr3 109298027 109298057 -50301726 + AT_rich Low_complexity Low_complexity 1 30 0 4 1418 31 68 0 0 chr3 109298868 109298927 -50300856 + AT_rich Low_complexity Low_complexity 1 59 0 4 1418 207 0 0 0 chr3 109299234 109299257 -50300526 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 4 1418 635 311 5 21 chr3 109300545 109300739 -50299044 + B4A SINE B4 102 292 0 4 1418 292 260 258 88 chr3 109302602 109302842 -50296941 - B4A SINE B4 -6 286 6 4 1418 25 0 0 0 chr3 109303524 109303549 -50296234 + AT_rich Low_complexity Low_complexity 1 25 0 4 1418 730 230 146 10 chr3 109304854 109305060 -50294723 - Lx6 LINE L1 0 7460 7227 4 1418 301 360 36 7 chr3 109305683 109305820 -50293963 - MIR SINE MIR -119 143 3 4 1418 369 0 0 0 chr3 109305878 109305919 -50293864 + (TG)n Simple_repeat Simple_repeat 1 41 0 4 1418 297 302 62 19 chr3 109306542 109306704 -50293079 + L1MA7 LINE L1 5901 6069 -222 4 1418 443 263 106 7 chr3 109306763 109306963 -50292820 + L1MB8 LINE L1 5952 6168 -16 4 1418 187 304 12 12 chr3 109306997 109307077 -50292706 - L2a LINE L2 0 3426 3347 4 1418 263 299 109 31 chr3 109307271 109307464 -50292319 - L2a LINE L2 -309 3117 2910 4 1418 183 356 89 0 chr3 109308000 109308101 -50291682 - L2a LINE L2 -1979 1440 1331 4 1418 435 137 0 0 chr3 109308201 109308274 -50291509 + (GGA)n Simple_repeat Simple_repeat 3 75 0 4 1418 267 352 175 29 chr3 109308328 109308676 -50291107 - L2a LINE L2 -2343 1076 678 4 1418 318 26 0 0 chr3 109308821 109308860 -50290923 + (CA)n Simple_repeat Simple_repeat 2 40 0 4 1418 722 301 70 22 chr3 109308862 109309134 -50290649 - B4A SINE B4 -6 286 2 4 1418 1467 63 0 11 chr3 109309566 109309743 -50290040 + B2_Mm2 SINE B2 2 176 -19 4 1418 308 176 0 14 chr3 109310006 109310075 -50289708 + CT-rich Low_complexity Low_complexity 1 68 0 4 1418 300 349 0 0 chr3 109310822 109310931 -50288852 + CT-rich Low_complexity Low_complexity 6 114 0 4 1418 3413 140 72 47 chr3 109311013 109311679 -50288104 - Lx4B LINE L1 -4 7054 6372 4 1418 186 43 0 0 chr3 109311940 109311963 -50287820 + (TAA)n Simple_repeat Simple_repeat 1 23 0 4 1418 517 283 112 46 chr3 109311963 109312159 -50287624 + B3 SINE B2 3 211 -5 4 1418 497 297 23 0 chr3 109312225 109312400 -50287383 + (CA)n Simple_repeat Simple_repeat 2 180 0 4 1418 342 252 0 0 chr3 109312436 109312535 -50287248 + (TA)n Simple_repeat Simple_repeat 1 99 0 4 1418 273 29 0 0 chr3 109312561 109312595 -50287188 + (CAGA)n Simple_repeat Simple_repeat 4 37 0 4 1418 26 30 0 0 chr3 109313081 109313114 -50286669 + AT_rich Low_complexity Low_complexity 1 33 0 4 1418 475 283 95 18 chr3 109313274 109313443 -50286340 + B3A SINE B2 1 182 -16 4 1418 552 154 0 0 chr3 109313464 109313568 -50286215 + (CA)n Simple_repeat Simple_repeat 2 105 0 4 1418 216 0 0 0 chr3 109313588 109313612 -50286171 + (CA)n Simple_repeat Simple_repeat 2 25 0 4 1419 204 315 112 52 chr3 109314138 109314272 -50285511 - MIR3 SINE MIR -49 159 18 4 1419 371 299 42 8 chr3 109314519 109314644 -50285139 + B1F1 SINE Alu 1 130 -18 4 1419 805 283 37 70 chr3 109316159 109316459 -50283324 + B4 SINE B4 3 292 0 4 1419 679 23 0 2 chr3 109316735 109316821 -50282962 - L1Md_T LINE L1 -1201 5775 5692 4 1419 6927 47 2 1 chr3 109316821 109317624 -50282159 + L1Md_T LINE L1 5777 6580 -2 4 1419 665 104 109 22 chr3 109317624 109317684 -50282099 - L1_Mus4 LINE L1 -946 5690 5620 4 1419 677 266 120 111 chr3 109317698 109318130 -50281653 - MT2B LTR ERVL -2 599 98 4 1419 267 329 11 34 chr3 109318085 109318173 -50281610 - 7SLRNA srpRNA srpRNA -228 86 1 4 1419 209 33 33 0 chr3 109319152 109319182 -50280601 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 4 1419 998 270 42 28 chr3 109320386 109320741 -50279042 + Lx6 LINE L1 7078 7437 -23 4 1419 327 49 0 0 chr3 109320924 109320965 -50278818 + (TG)n Simple_repeat Simple_repeat 2 42 0 4 1419 227 301 14 14 chr3 109321113 109321187 -50278596 - L2c LINE L2 -238 3149 3076 4 1419 315 49 0 0 chr3 109321195 109321236 -50278547 + (CAAT)n Simple_repeat Simple_repeat 2 42 0 4 1419 323 309 12 0 chr3 109322593 109322674 -50277109 - B1F1 SINE Alu -33 116 35 4 1419 824 136 29 6 chr3 109323068 109323238 -50276545 + GA-rich Low_complexity Low_complexity 2 175 0 4 1419 1063 316 103 38 chr3 109325664 109326462 -50273321 - L1MB3 LINE L1 -14 6169 5320 4 1419 456 19 0 0 chr3 109326470 109326523 -50273260 + (TG)n Simple_repeat Simple_repeat 1 53 0 4 1419 585 300 54 15 chr3 109326662 109326923 -50272860 - L1MB3 LINE L1 -1027 5113 4843 4 1419 2829 211 99 43 chr3 109327365 109328123 -50271660 - Lx9 LINE L1 0 7644 6845 4 1419 1200 214 8 24 chr3 109328285 109328539 -50271244 - Lx9 LINE L1 -813 6831 6582 4 1419 950 282 45 8 chr3 109330525 109330789 -50268994 - MER2 DNA MER2_type -1 344 71 4 1419 668 262 68 36 chr3 109331384 109331665 -50268118 - B4A SINE B4 0 292 3 4 1419 38 39 0 0 chr3 109331969 109332021 -50267762 + AT_rich Low_complexity Low_complexity 1 52 0 4 1419 198 71 0 0 chr3 109332537 109332565 -50267218 + (TG)n Simple_repeat Simple_repeat 2 29 0 4 1419 515 316 12 77 chr3 109332568 109332598 -50267185 - RSINE1 SINE B4 -6 159 130 4 1419 198 0 0 0 chr3 109332598 109332620 -50267163 + (CA)n Simple_repeat Simple_repeat 1 22 0 4 1419 351 44 0 0 chr3 109332624 109332669 -50267114 + (CACAG)n Simple_repeat Simple_repeat 3 47 0 4 1419 515 316 12 77 chr3 109332669 109332801 -50266982 - RSINE1 SINE B4 -36 129 3 4 1419 256 279 26 96 chr3 109332861 109332976 -50266807 + MIRc SINE MIR 61 167 -101 4 1419 277 305 163 73 chr3 109333641 109333942 -50265841 - MLT1J LTR MaLR -73 439 112 5 1419 351 0 0 0 chr3 109335803 109335842 -50263941 + (TG)n Simple_repeat Simple_repeat 2 40 0 5 1419 357 289 96 59 chr3 109335905 109336041 -50263742 - ID_B1 SINE B4 -5 219 79 5 1419 249 284 13 13 chr3 109336877 109336952 -50262831 - L2a LINE L2 -5 3421 3347 5 1419 471 130 0 0 chr3 109336974 109337051 -50262732 + (CA)n Simple_repeat Simple_repeat 2 78 0 5 1419 200 163 23 0 chr3 109337051 109337094 -50262689 + (TA)n Simple_repeat Simple_repeat 2 45 0 5 1419 314 313 80 57 chr3 109338174 109338350 -50261433 + L2b LINE L2 3196 3375 0 5 1419 965 242 80 101 chr3 109339795 109340121 -50259662 + MTE2a LTR MaLR 6 324 -55 5 1419 558 67 0 0 chr3 109340124 109340199 -50259584 + (TCTA)n Simple_repeat Simple_repeat 4 78 0 5 1419 560 230 91 12 chr3 109341927 109342086 -50257697 - ID_B1 SINE B4 -39 253 82 5 1419 391 305 73 0 chr3 109342476 109342640 -50257143 - MIRc SINE MIR -1 267 92 5 1419 546 296 86 54 chr3 109344035 109344221 -50255562 + B4A SINE B4 28 219 -73 5 1419 474 299 22 14 chr3 109344243 109344382 -50255401 + RSINE1 SINE B4 26 165 0 5 1419 484 15 31 0 chr3 109345669 109345734 -50254049 + (TC)n Simple_repeat Simple_repeat 2 68 0 5 1419 983 272 9 19 chr3 109347017 109347331 -50252452 + MTEb LTR MaLR 1 379 0 5 1419 180 116 67 44 chr3 109348508 109348553 -50251230 - L3 LINE CR1 -4335 154 109 5 1419 238 292 71 58 chr3 109349205 109349445 -50250338 + L1_Rod LINE L1 4976 5218 -629 5 1419 1958 162 59 23 chr3 109350709 109351063 -50248720 + ORR1B2 LTR MaLR 1 367 0 5 1419 401 308 28 0 chr3 109351479 109351586 -50248197 + MER21B LTR ERV1 558 667 -196 5 1419 1199 316 114 56 chr3 109351845 109352505 -50247278 - MER21B LTR ERV1 -101 762 65 5 1419 468 35 0 0 chr3 109352808 109352866 -50246917 + (TG)n Simple_repeat Simple_repeat 2 59 0 5 1419 517 263 193 39 chr3 109352890 109353123 -50246660 - B4A SINE B4 -22 270 2 5 1419 186 329 70 47 chr3 109353390 109353476 -50246307 + L2c LINE L2 3291 3378 -9 5 1419 1608 211 35 19 chr3 109354600 109354968 -50244815 - ORR1D1 LTR MaLR 0 374 1 5 1419 26 0 0 0 chr3 109355650 109355676 -50244107 + AT_rich Low_complexity Low_complexity 1 26 0 5 1419 405 167 0 104 chr3 109357635 109357789 -50241994 - Lx2B LINE L1 -1 6999 6862 5 1419 470 165 0 10 chr3 109357879 109357983 -50241800 + (TA)n Simple_repeat Simple_repeat 2 104 0 5 1419 255 315 14 14 chr3 109358193 109358267 -50241516 - RSINE1 SINE B4 -89 76 3 5 1419 30 45 0 0 chr3 109358909 109358953 -50240830 + AT_rich Low_complexity Low_complexity 1 44 0 5 1419 476 329 27 67 chr3 109358974 109359124 -50240659 - B1F1 SINE Alu -5 144 1 5 1419 201 47 0 65 chr3 109359124 109359170 -50240613 + (TTTTG)n Simple_repeat Simple_repeat 1 43 0 5 1419 315 282 6 9 chr3 109359271 109359378 -50240405 - PB1D10 SINE Alu -7 110 5 5 1419 1135 268 111 57 chr3 109360038 109360695 -50239088 + RMER13A LTR ERVK 2 766 -94 5 1419 324 70 0 0 chr3 109360728 109360771 -50239012 + (TG)n Simple_repeat Simple_repeat 1 43 0 5 1419 584 272 104 48 chr3 109360786 109361037 -50238746 - B4A SINE B4 -27 265 1 5 1419 225 94 0 0 chr3 109361568 109361600 -50238183 + (CAT)n Simple_repeat Simple_repeat 2 33 0 5 1419 369 0 0 0 chr3 109361646 109361687 -50238096 + (TC)n Simple_repeat Simple_repeat 2 42 0 5 1419 243 0 0 0 chr3 109361687 109361713 -50238070 + (TG)n Simple_repeat Simple_repeat 2 28 0 5 1419 901 243 64 5 chr3 109362819 109363022 -50236761 + ID_B1 SINE B4 1 215 -9 5 1419 215 178 44 0 chr3 109363234 109363279 -50236504 - MIRb SINE MIR -23 245 199 5 1419 387 0 0 0 chr3 109370059 109370102 -50229681 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 5 1419 774 60 0 0 chr3 109373211 109373311 -50226472 + (GA)n Simple_repeat Simple_repeat 1 100 0 5 1419 817 262 19 40 chr3 109375084 109375368 -50224415 + B4A SINE B4 1 283 -9 5 1419 315 0 0 0 chr3 109375383 109375418 -50224365 + (CA)n Simple_repeat Simple_repeat 2 36 0 5 1419 543 31 0 0 chr3 109375791 109375856 -50223927 + (GAAA)n Simple_repeat Simple_repeat 4 68 0 5 1419 230 200 186 0 chr3 109375856 109375916 -50223867 - BGLII_A LTR ERVK -328 117 45 5 1419 378 0 0 0 chr3 109376063 109376105 -50223678 + (TC)n Simple_repeat Simple_repeat 1 42 0 5 1419 243 0 0 0 chr3 109376468 109376495 -50223288 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 5 1419 198 118 0 0 chr3 109378641 109378675 -50221108 + (T)n Simple_repeat Simple_repeat 1 34 0 5 1419 380 263 26 26 chr3 109379557 109379674 -50220109 + PB1 SINE Alu 5 121 -6 5 1419 2947 284 103 36 chr3 109383423 109384850 -50214933 - Lx9 LINE L1 -14 7630 6108 5 1419 324 312 21 0 chr3 109385036 109385129 -50214654 + MIRb SINE MIR 153 247 -21 5 1419 653 214 57 7 chr3 109385269 109385410 -50214373 + B1_Mur2 SINE Alu 1 148 -1 5 1419 207 0 0 0 chr3 109389420 109389443 -50210340 + (TG)n Simple_repeat Simple_repeat 1 23 0 5 1419 315 0 0 0 chr3 109389443 109389477 -50210306 + (GA)n Simple_repeat Simple_repeat 1 35 0 5 1419 229 295 170 0 chr3 109389680 109389792 -50209991 + MIR SINE MIR 82 212 -50 5 1419 444 394 42 54 chr3 109389916 109390249 -50209534 - MLT1F2 LTR MaLR -98 462 134 5 1419 342 0 0 0 chr3 109391096 109391134 -50208649 + (TG)n Simple_repeat Simple_repeat 2 39 0 5 1419 324 111 0 0 chr3 109391868 109391922 -50207861 + (TG)n Simple_repeat Simple_repeat 2 55 0 5 1419 628 318 78 40 chr3 109392042 109392155 -50207628 - MER47B DNA MER2_type -33 385 278 5 1419 186 118 0 0 chr3 109392155 109392189 -50207594 + (TG)n Simple_repeat Simple_repeat 2 35 0 5 1419 628 318 78 40 chr3 109392189 109392445 -50207338 - MER47B DNA MER2_type -141 277 2 5 1419 24 32 0 0 chr3 109392682 109392713 -50207070 + AT_rich Low_complexity Low_complexity 1 31 0 5 1419 225 328 31 0 chr3 109394861 109394925 -50204858 + MIRc SINE MIR 118 183 -85 5 1419 241 245 140 84 chr3 109395031 109395138 -50204645 - PB1D10 SINE Alu -3 114 2 5 1419 682 296 43 21 chr3 109396596 109396831 -50202952 - MER2 DNA MER2_type -98 247 8 5 1419 215 288 49 12 chr3 109397806 109397887 -50201896 + PB1D10 SINE Alu 13 96 -21 5 1419 215 250 0 32 chr3 109397908 109397970 -50201813 + GA-rich Low_complexity Low_complexity 2 61 0 5 1419 267 336 65 39 chr3 109398320 109398549 -50201234 + MIR SINE MIR 27 261 -1 5 1419 1074 161 61 14 chr3 109398748 109398962 -50200821 - URR1A DNA MER1_type -2 224 1 5 1419 3502 18 2 0 chr3 109400347 109400742 -50199041 + MTA_Mm LTR MaLR 1 396 0 5 1419 274 310 68 30 chr3 109400963 109401096 -50198687 - MER97c DNA MER1_type? -934 156 19 5 1419 189 0 0 0 chr3 109401440 109401461 -50198322 + (T)n Simple_repeat Simple_repeat 1 21 0 5 1419 772 218 0 0 chr3 109401616 109401758 -50198025 - B1_Mur4 SINE Alu -1 149 8 5 1419 3236 111 149 32 chr3 109402761 109403299 -50196484 + MT2B LTR ERVL 1 601 0 5 1419 380 287 118 24 chr3 109403768 109403909 -50195874 + B3A SINE B2 19 171 -27 5 1419 297 0 0 0 chr3 109403912 109403945 -50195838 + (TC)n Simple_repeat Simple_repeat 1 33 0 5 1419 276 30 0 0 chr3 109403945 109403977 -50195806 + (CA)n Simple_repeat Simple_repeat 1 33 0 5 1419 1903 273 82 75 chr3 109405560 109405705 -50194078 - MER54B LTR ERVL 0 793 664 5 1419 416 115 0 0 chr3 109405705 109405783 -50194000 - Lx LINE L1 0 6654 6577 5 1419 1903 273 82 75 chr3 109405783 109406416 -50193367 - MER54B LTR ERVL -130 663 9 5 1419 192 135 0 0 chr3 109406440 109406477 -50193306 + (CA)n Simple_repeat Simple_repeat 2 38 0 5 1419 430 286 0 56 chr3 109406588 109406714 -50193069 - L2c LINE L2 -1 3386 3268 5 1419 324 0 0 0 chr3 109407294 109407330 -50192453 + (TTATA)n Simple_repeat Simple_repeat 2 37 0 5 1419 30 27 0 0 chr3 109407508 109407545 -50192238 + AT_rich Low_complexity Low_complexity 1 37 0 5 1419 937 293 118 18 chr3 109407569 109408139 -50191644 - L1_Mur3 LINE L1 -150 5730 5104 5 1419 1328 250 38 80 chr3 109408177 109408886 -50190897 - L1_Mur3 LINE L1 -1517 4363 3685 5 1419 1047 98 14 0 chr3 109414058 109414201 -50185582 + B1_Mus1 SINE Alu 2 146 -2 5 1419 387 0 0 0 chr3 109414362 109414405 -50185378 + (CA)n Simple_repeat Simple_repeat 2 44 0 5 1419 238 100 160 0 chr3 109414433 109414483 -50185300 - Lx8 LINE L1 0 7473 7416 5 1419 23 68 0 0 chr3 109415036 109415080 -50184703 + AT_rich Low_complexity Low_complexity 1 44 0 5 1419 1478 85 20 0 chr3 109415121 109415322 -50184461 - MTB_Mm LTR MaLR 0 407 203 5 1419 2104 99 18 46 chr3 109415323 109415651 -50184132 + ORR1A2 LTR MaLR 1 319 -8 5 1419 270 125 0 0 chr3 109415658 109415706 -50184077 - Lx9 LINE L1 -66 7578 7531 5 1419 39512 4 0 1 chr3 109415738 109422506 -50177277 - L1Md_A LINE L1 0 6582 1 5 1419 333 0 0 0 chr3 109422527 109422564 -50177219 + (CA)n Simple_repeat Simple_repeat 2 38 0 5 1419 1651 215 30 3 chr3 109422579 109422943 -50176840 - Lx9 LINE L1 -168 7476 7103 5 1419 389 314 32 16 chr3 109422947 109423070 -50176713 - MLT1A0 LTR MaLR -240 125 1 5 1419 798 129 0 0 chr3 109423331 109423471 -50176312 + (TC)n Simple_repeat Simple_repeat 1 140 0 5 1419 456 19 0 0 chr3 109423473 109423526 -50176257 + (TTCC)n Simple_repeat Simple_repeat 4 56 0 5 1419 764 151 24 21 chr3 109423537 109423683 -50176100 - B1_Mur4 SINE Alu -2 146 6 5 1419 218 138 0 17 chr3 109425105 109425164 -50174619 + (TCTCTG)n Simple_repeat Simple_repeat 3 60 0 5 1419 814 282 26 63 chr3 109425164 109425188 -50174595 - B4A SINE B4 0 292 276 5 1419 375 23 0 0 chr3 109425188 109425232 -50174551 + (TG)n Simple_repeat Simple_repeat 1 44 0 5 1419 814 282 26 63 chr3 109425232 109425510 -50174273 - B4A SINE B4 -17 275 1 5 1419 1833 182 14 39 chr3 109427429 109427789 -50171994 - Lx4B LINE L1 -18 7040 6690 6 1419 654 174 0 0 chr3 109428107 109428279 -50171504 + CT-rich Low_complexity Low_complexity 1 172 0 6 1419 276 40 19 39 chr3 109432498 109432550 -50167233 + (TTTTTG)n Simple_repeat Simple_repeat 2 52 0 6 1419 1212 54 0 0 chr3 109432553 109432700 -50167083 - B1_Mus1 SINE Alu 0 148 2 6 1419 342 170 0 0 chr3 109432720 109432814 -50166969 + CT-rich Low_complexity Low_complexity 1 94 0 6 1419 377 54 18 0 chr3 109432973 109433029 -50166754 + (TG)n Simple_repeat Simple_repeat 1 57 0 6 1419 674 266 121 28 chr3 109433069 109433317 -50166466 - B4A SINE B4 -20 272 2 6 1419 335 325 24 6 chr3 109433428 109433595 -50166188 - L1M4 LINE L1 -1950 4196 4027 6 1419 853 311 88 59 chr3 109433607 109434295 -50165488 - L1M4 LINE L1 -2639 3507 2799 6 1419 441 311 28 32 chr3 109434400 109434649 -50165134 - L1M4 LINE L1 -3308 2838 2591 6 1419 895 296 82 55 chr3 109435137 109435538 -50164245 + MTD LTR MaLR 6 417 -2 6 1419 419 377 19 0 chr3 109435804 109435958 -50163825 - MIR SINE MIR -105 157 1 6 1419 269 205 25 37 chr3 109439657 109439738 -50160045 + GA-rich Low_complexity Low_complexity 3 82 0 6 1419 279 0 0 0 chr3 109440442 109440473 -50159310 + (CA)n Simple_repeat Simple_repeat 2 32 0 6 1419 411 78 0 0 chr3 109440473 109440537 -50159246 + (GA)n Simple_repeat Simple_repeat 1 64 0 6 1419 196 296 12 12 chr3 109441146 109441228 -50158555 + MIR SINE MIR 126 207 -55 6 1420 23 0 0 0 chr3 109446113 109446136 -50153647 + AT_rich Low_complexity Low_complexity 1 23 0 6 1420 6689 153 59 17 chr3 109447033 109448360 -50151423 - Lx3A LINE L1 -5 6976 5595 6 1420 677 45 0 11 chr3 109448443 109448533 -50151250 + (TCCC)n Simple_repeat Simple_repeat 2 90 0 6 1420 272 402 8 8 chr3 109449614 109449737 -50150046 - L2c LINE L2 -5 3382 3260 6 1420 1458 109 264 17 chr3 109451182 109451470 -50148313 - ORR1B2 LTR MaLR -8 359 1 6 1420 378 367 167 19 chr3 109452218 109452685 -50147098 + L1MEd LINE L1 668 1203 -4916 6 1420 232 257 103 62 chr3 109453033 109453178 -50146605 + L1MEb LINE L1 240 390 -5680 6 1420 856 259 70 25 chr3 109453425 109453667 -50146116 + MTD LTR MaLR 153 405 -14 6 1420 493 292 102 31 chr3 109455162 109455388 -50144395 - RMER15 LTR ERVL 0 575 334 6 1420 294 50 0 0 chr3 109457425 109457465 -50142318 + (CA)n Simple_repeat Simple_repeat 1 40 0 6 1420 423 0 0 0 chr3 109457872 109457919 -50141864 + (CA)n Simple_repeat Simple_repeat 2 48 0 6 1420 324 0 0 0 chr3 109457919 109457954 -50141829 + (GA)n Simple_repeat Simple_repeat 2 37 0 6 1420 192 167 0 0 chr3 109457954 109458002 -50141781 + (CA)n Simple_repeat Simple_repeat 1 48 0 6 1420 249 301 124 29 chr3 109458137 109458274 -50141509 + HAL1 LINE L1 1439 1588 -919 6 1420 200 177 0 31 chr3 109459796 109459860 -50139923 + (TCTG)n Simple_repeat Simple_repeat 4 65 0 6 1420 22 0 0 0 chr3 109461338 109461360 -50138423 + AT_rich Low_complexity Low_complexity 1 22 0 6 1420 1305 101 16 0 chr3 109461452 109461640 -50138143 + B2_Mm2 SINE B2 3 193 -2 6 1420 1002 162 0 0 chr3 109463063 109463242 -50136541 + CT-rich Low_complexity Low_complexity 2 180 0 6 1420 43 35 0 0 chr3 109463603 109463660 -50136123 + AT_rich Low_complexity Low_complexity 1 57 0 6 1420 436 271 211 51 chr3 109465577 109465814 -50133969 - B4A SINE B4 -16 276 2 6 1420 23 0 0 0 chr3 109467374 109467397 -50132386 + AT_rich Low_complexity Low_complexity 1 23 0 6 1420 201 162 0 0 chr3 109467865 109467902 -50131881 + (CAAA)n Simple_repeat Simple_repeat 4 40 0 6 1420 709 287 75 48 chr3 109468729 109469022 -50130761 - ORR1E LTR MaLR -9 350 50 6 1420 679 297 82 9 chr3 109470269 109470609 -50129174 + L1MC4 LINE L1 7678 8042 0 6 1420 247 333 81 0 chr3 109470801 109470888 -50128895 - L2b LINE L2 0 3375 3282 6 1420 23 78 0 0 chr3 109471224 109471275 -50128508 + AT_rich Low_complexity Low_complexity 1 51 0 6 1420 201 158 0 0 chr3 109471406 109471444 -50128339 + T-rich Low_complexity Low_complexity 2 39 0 6 1420 1043 103 14 0 chr3 109471445 109471591 -50128192 - B1_Mus1 SINE Alu 0 148 1 6 1420 8921 19 0 0 chr3 109471926 109472999 -50126784 + L1Md_T LINE L1 4514 5586 -297 6 1420 8012 57 0 0 chr3 109472999 109474030 -50125753 + L1Md_T LINE L1 5587 6582 0 6 1420 203 293 0 0 chr3 109474779 109474837 -50124946 + MIR SINE MIR 184 241 -21 6 1420 223 328 27 115 chr3 109476507 109476655 -50123128 + ID_B1 SINE B4 65 199 -25 6 1420 414 333 14 61 chr3 109476539 109476686 -50123097 + B1F2 SINE Alu 10 149 0 6 1420 219 102 0 75 chr3 109476690 109476743 -50123040 + A-rich Low_complexity Low_complexity 2 50 0 6 1420 840 135 30 0 chr3 109476747 109476880 -50122903 + B1_Mm SINE Alu 2 138 -9 6 1420 243 79 0 0 chr3 109476880 109476918 -50122865 + (CAAAC)n Simple_repeat Simple_repeat 2 39 0 6 1420 274 351 63 26 chr3 109477082 109477272 -50122511 - L2a LINE L2 -21 3405 3209 6 1420 436 344 66 31 chr3 109477859 109478117 -50121666 - L2a LINE L2 -448 2971 2705 6 1420 201 74 0 0 chr3 109479522 109479549 -50120234 + (CTTG)n Simple_repeat Simple_repeat 2 28 0 6 1420 768 261 93 37 chr3 109481488 109481755 -50118028 + B4A SINE B4 1 285 -7 6 1420 459 112 0 0 chr3 109481760 109481840 -50117943 + (CA)n Simple_repeat Simple_repeat 1 80 0 6 1420 268 351 60 47 chr3 109482279 109482494 -50117289 - MLT1J LTR MaLR -8 504 287 6 1420 288 0 0 0 chr3 109482595 109482627 -50117156 + (TA)n Simple_repeat Simple_repeat 1 32 0 6 1420 303 28 0 0 chr3 109483869 109483905 -50115878 + (TG)n Simple_repeat Simple_repeat 2 37 0 6 1420 479 235 61 0 chr3 109484314 109484429 -50115354 - MIR3 SINE MIR -5 203 82 6 1420 216 0 0 0 chr3 109488637 109488661 -50111122 + (TG)n Simple_repeat Simple_repeat 1 24 0 6 1420 282 248 103 60 chr3 109488981 109489097 -50110686 - MIR SINE MIR -112 150 30 6 1420 254 283 0 16 chr3 109489432 109489493 -50110290 + MIRb SINE MIR 26 85 -183 6 1420 201 214 48 0 chr3 109490338 109490380 -50109403 - MIRc SINE MIR -192 76 33 6 1420 990 209 46 5 chr3 109490447 109490663 -50109120 + URR1B DNA MER1_type 1 225 0 6 1420 595 330 292 16 chr3 109491471 109491910 -50107873 - MLT1F2 LTR MaLR 0 560 1 6 1420 228 308 114 20 chr3 109492333 109492482 -50107301 - L2a LINE L2 -5 3421 3259 6 1420 498 204 0 0 chr3 109492998 109493111 -50106672 + (TG)n Simple_repeat Simple_repeat 2 114 0 6 1420 336 282 85 58 chr3 109493126 109493314 -50106469 - MLT1B LTR MaLR -195 195 3 6 1420 207 0 0 0 chr3 109493996 109494019 -50105764 + (TTG)n Simple_repeat Simple_repeat 2 24 0 6 1420 442 321 77 24 chr3 109494776 109494945 -50104838 - MTD LTR MaLR -224 195 18 6 1420 224 332 169 9 chr3 109495416 109495647 -50104136 - L2a LINE L2 -970 2449 2182 6 1420 185 329 250 23 chr3 109495649 109496169 -50103614 + L2 LINE L2 1523 2160 -1259 6 1420 532 328 50 54 chr3 109496199 109496460 -50103323 + MTEa LTR MaLR 4 263 -116 6 1420 216 0 0 0 chr3 109496888 109496912 -50102871 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 6 1420 180 0 0 0 chr3 109496912 109496932 -50102851 + (GTTTG)n Simple_repeat Simple_repeat 2 21 0 6 1420 524 65 13 0 chr3 109497329 109497406 -50102377 + (TC)n Simple_repeat Simple_repeat 1 78 0 6 1420 395 313 65 42 chr3 109497526 109497715 -50102068 + LTR33C LTR ERVL 431 623 -6 6 1420 591 296 120 31 chr3 109497724 109498073 -50101710 + ERVL-E-int LTR ERVL 4081 4460 -1207 6 1420 2252 111 9 3 chr3 109498238 109498563 -50101220 + ORR1A2 LTR MaLR 1 327 0 6 1420 857 352 12 6 chr3 109498819 109499145 -50100638 + ORR1A2-int LTR MaLR 31 358 -1222 6 1420 846 305 20 0 chr3 109499144 109499344 -50100439 + B3 SINE B2 6 209 -7 6 1420 681 301 89 92 chr3 109499398 109499735 -50100048 + ORR1D2 LTR MaLR 35 370 0 6 1420 351 357 0 16 chr3 109499851 109499979 -50099804 + ORR1A2-int LTR MaLR 560 685 -895 6 1420 1344 178 8 31 chr3 109500005 109500266 -50099517 + Lx4A LINE L1 6804 7058 0 1 1420 306 324 39 19 chr3 109500286 109500390 -50099393 + MTE-int LTR MaLR 713 818 -762 2 1420 1646 80 36 0 chr3 109500455 109500680 -50099103 - ORR1A2 LTR MaLR 0 327 95 3 1420 569 333 83 62 chr3 109500664 109500942 -50098841 + MTE-int LTR MaLR 1100 1396 -184 2 1420 1078 75 0 0 chr3 109500942 109501119 -50098664 + L1_Mus1 LINE L1 6428 6567 0 4 1420 569 333 83 62 chr3 109501119 109501262 -50098521 + MTE-int LTR MaLR 1397 1530 -50 2 1420 518 286 68 5 chr3 109501862 109502052 -50097731 + Lx9 LINE L1 7230 7431 -213 5 1420 239 173 0 19 chr3 109502071 109502124 -50097659 + CT-rich Low_complexity Low_complexity 4 55 0 6 1420 203 133 22 22 chr3 109502280 109502326 -50097457 + A-rich Low_complexity Low_complexity 4 49 0 7 1420 320 185 0 0 chr3 109502395 109502449 -50097334 + MTE2b LTR MaLR 1 54 -325 8 1420 557 326 71 8 chr3 109502624 109502862 -50096921 + MT2A LTR ERVL 281 533 0 9 1420 503 355 111 37 chr3 109502877 109503202 -50096581 + LTR33C LTR ERVL 11 359 -270 1 1420 338 265 10 39 chr3 109503266 109503368 -50096415 + LTR33C LTR ERVL 516 614 -15 1 1420 226 341 95 24 chr3 109504473 109504599 -50095184 - LTR33 LTR ERVL -369 146 12 1 1420 647 249 95 15 chr3 109505545 109505745 -50094038 + B3 SINE B2 1 216 0 1 1420 220 325 11 11 chr3 109506066 109506153 -50093630 + (CATA)n Simple_repeat Simple_repeat 3 89 0 1 1420 300 244 48 12 chr3 109506657 109506740 -50093043 + MER2 DNA MER2_type 87 172 -173 1 1420 194 0 39 0 chr3 109506942 109506968 -50092815 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 1 1420 334 335 92 7 chr3 109507528 109507681 -50092102 + MIR3 SINE MIR 24 189 -19 1 1420 248 246 14 14 chr3 109507891 109507965 -50091818 + MADE2 DNA Mariner 7 80 0 1 1420 494 291 106 0 chr3 109508404 109508583 -50091200 - MIR SINE MIR -25 237 40 1 1420 201 121 0 0 chr3 109508678 109508711 -50091072 + (CA)n Simple_repeat Simple_repeat 2 34 0 1 1420 8550 35 1 3 chr3 109509031 109510121 -50089662 - L1Md_F2 LINE L1 0 6582 5495 2 1420 363 314 117 97 chr3 109511320 109512233 -50087550 + L2a LINE L2 2478 3426 0 2 1420 183 273 75 54 chr3 109512541 109512634 -50087149 - L2a LINE L2 -312 3114 3020 2 1420 300 315 36 0 chr3 109514395 109514506 -50085277 + L2a LINE L2 3263 3377 -49 2 1420 438 347 97 46 chr3 109516700 109517071 -50082712 + L2a LINE L2 3032 3421 -5 2 1420 733 259 16 48 chr3 109517168 109517416 -50082367 + L1MA5 LINE L1 6048 6287 -13 2 1420 423 0 0 0 chr3 109517451 109517498 -50082285 + (TA)n Simple_repeat Simple_repeat 1 47 0 2 1420 186 43 0 0 chr3 109517499 109517522 -50082261 + (GA)n Simple_repeat Simple_repeat 2 24 0 2 1420 1175 89 143 0 chr3 109517732 109517900 -50081883 - B2_Mm2 SINE B2 -2 193 2 2 1420 271 305 20 130 chr3 109517904 109518104 -50081679 - MER3 DNA MER1_type -31 178 1 2 1420 2110 79 119 9 chr3 109518495 109518814 -50080969 + ORR1B1 LTR MaLR 41 394 0 3 1420 312 91 0 0 chr3 109518841 109518885 -50080898 + (A)n Simple_repeat Simple_repeat 1 44 0 3 1420 878 165 168 11 chr3 109518956 109519146 -50080637 - URR1B DNA MER1_type 0 225 6 3 1420 978 191 62 12 chr3 109519541 109519785 -50079998 + Lx9 LINE L1 7389 7644 0 3 1420 433 288 167 59 chr3 109520449 109520796 -50078987 + MT2A LTR ERVL 132 514 -19 3 1420 1506 56 0 0 chr3 109521660 109521838 -50077945 + L1_Mus1 LINE L1 6390 6567 0 3 1420 660 323 34 115 chr3 109522324 109522468 -50077315 - MTD LTR MaLR -16 403 285 3 1420 369 0 0 0 chr3 109522468 109522509 -50077274 + (GA)n Simple_repeat Simple_repeat 2 42 0 3 1420 660 323 34 115 chr3 109522509 109522780 -50077003 - MTD LTR MaLR -135 284 22 3 1420 412 320 47 39 chr3 109525169 109525403 -50074380 - L1MD3 LINE L1 -356 7639 7404 3 1420 204 55 0 53 chr3 109525407 109525445 -50074338 + (TTTTTG)n Simple_repeat Simple_repeat 2 37 0 3 1420 209 109 0 61 chr3 109525528 109525577 -50074206 + T-rich Low_complexity Low_complexity 5 50 0 4 1420 1234 56 0 0 chr3 109525577 109525720 -50074063 - B1_Mm SINE Alu 0 147 5 4 1420 2073 98 40 0 chr3 109525919 109526215 -50073568 + MT2B LTR ERVL 1 308 -293 4 1420 674 338 5 33 chr3 109526490 109526704 -50073079 + RMER1B Other Other 91 298 -768 4 1420 2449 154 129 0 chr3 109526701 109527082 -50072701 + RMER1A Other Other 475 866 -164 4 1420 333 0 0 0 chr3 109527082 109527119 -50072664 + (TG)n Simple_repeat Simple_repeat 2 38 0 4 1420 2449 154 129 0 chr3 109527119 109527171 -50072612 + RMER1A Other Other 867 963 -67 4 1420 405 191 17 9 chr3 109527171 109527287 -50072496 + GA-rich Low_complexity Low_complexity 2 118 0 4 1420 352 360 55 12 chr3 109527725 109527888 -50071895 - MER5A DNA MER1_type -2 187 18 4 1420 273 29 0 0 chr3 109528062 109528096 -50071687 + (CA)n Simple_repeat Simple_repeat 2 35 0 4 1420 396 0 0 0 chr3 109529031 109529075 -50070708 + (TG)n Simple_repeat Simple_repeat 1 44 0 4 1420 1387 77 39 0 chr3 109529224 109529406 -50070377 + B2_Mm1t SINE B2 1 189 -4 5 1420 345 297 95 125 chr3 109529826 109530195 -50069588 - ORR1E LTR MaLR -1 358 1 5 1420 333 0 0 0 chr3 109530274 109530311 -50069472 + (TG)n Simple_repeat Simple_repeat 2 38 0 5 1420 192 111 0 0 chr3 109532501 109532537 -50067246 + (T)n Simple_repeat Simple_repeat 1 36 0 5 1420 387 0 0 0 chr3 109533168 109533211 -50066572 + (CA)n Simple_repeat Simple_repeat 1 43 0 5 1420 441 0 0 0 chr3 109533396 109533445 -50066338 + (TC)n Simple_repeat Simple_repeat 2 50 0 5 1420 208 305 224 18 chr3 109534784 109534954 -50064829 - MIRc SINE MIR -40 228 24 5 1420 226 312 83 53 chr3 109536804 109536936 -50062847 - MLT1J LTR MaLR -51 461 326 5 1420 291 269 6 26 chr3 109538462 109538565 -50061218 + B4 SINE B4 1 100 -192 5 1420 349 306 89 96 chr3 109538619 109538890 -50060893 - RMER20B LTR ERVK -235 392 124 5 1420 407 372 38 38 chr3 109539087 109539133 -50060650 + B4A SINE B4 130 175 -117 6 1420 1835 176 125 3 chr3 109539133 109539470 -50060313 + ORR1C1 LTR MaLR 1 378 0 6 1420 407 372 38 38 chr3 109539470 109539582 -50060201 + B4A SINE B4 176 288 -4 6 1420 183 156 0 0 chr3 109539621 109539653 -50060130 + (CA)n Simple_repeat Simple_repeat 1 32 0 6 1420 510 17 0 0 chr3 109539656 109539715 -50060068 + (AATAG)n Simple_repeat Simple_repeat 4 62 0 6 1420 214 356 117 30 chr3 109540971 109541168 -50058615 + MIR SINE MIR 46 259 -3 6 1420 195 69 0 0 chr3 109541197 109541226 -50058557 + (TG)n Simple_repeat Simple_repeat 2 30 0 6 1420 338 298 128 90 chr3 109541229 109541309 -50058474 - RSINE1 SINE B4 -16 149 79 6 1420 4705 91 90 12 chr3 109541309 109541964 -50057819 - L1_Mus4 LINE L1 0 6636 5931 6 1420 338 298 128 90 chr3 109541964 109542016 -50057767 - RSINE1 SINE B4 -87 78 12 6 1420 5004 155 42 101 chr3 109542051 109543010 -50056773 + RMER19B LTR ERVK 1 902 0 6 1420 248 0 31 0 chr3 109544614 109544646 -50055137 + (TTTG)n Simple_repeat Simple_repeat 4 36 0 6 1420 312 339 40 73 chr3 109544666 109544914 -50054869 - L2a LINE L2 -128 3298 3059 7 1420 226 289 0 0 chr3 109545184 109545236 -50054547 + CT-rich Low_complexity Low_complexity 1 52 0 7 1420 1578 216 139 11 chr3 109545236 109545616 -50054167 - Lx6 LINE L1 -2 7458 7030 7 1420 5571 114 36 3 chr3 109545659 109547224 -50052559 + L1_Mus1 LINE L1 380 1998 -3885 7 1420 16505 88 9 1 chr3 109547221 109550221 -50049562 + L1_Mus1 LINE L1 3540 6567 0 7 1420 186 276 16 49 chr3 109552352 109552413 -50047370 - L2c LINE L2 -7 3419 3361 7 1420 225 324 14 0 chr3 109552906 109552977 -50046806 - L2c LINE L2 -202 3185 3114 7 1420 321 288 73 78 chr3 109553518 109553630 -50046153 + MER2 DNA MER2_type 1 109 -236 7 1420 4063 81 6 15 chr3 109553630 109554158 -50045625 - L1_Mus3 LINE L1 -7 6631 6109 7 1420 321 288 73 78 chr3 109554158 109554237 -50045546 + MER2 DNA MER2_type 110 191 -154 7 1420 1399 229 93 31 chr3 109555227 109555614 -50044169 + MTD LTR MaLR 9 419 0 7 1420 321 169 0 0 chr3 109555919 109555978 -50043805 + (TGG)n Simple_repeat Simple_repeat 1 59 0 7 1420 399 330 100 91 chr3 109556049 109556399 -50043384 - MTEa LTR MaLR -25 354 2 7 1420 1164 278 36 42 chr3 109556619 109556976 -50042807 + MTEa LTR MaLR 25 379 0 8 1420 843 97 0 0 chr3 109558040 109558185 -50041598 + (GA)n Simple_repeat Simple_repeat 2 146 0 8 1420 1992 174 53 3 chr3 109558686 109559061 -50040722 + ORR1B1 LTR MaLR 1 394 0 8 1420 686 354 121 45 chr3 109559741 109559962 -50039821 + Arthur1 DNA Tip100 37 282 -3665 8 1420 417 39 0 0 chr3 109559962 109560013 -50039770 + (CA)n Simple_repeat Simple_repeat 2 52 0 8 1420 686 354 121 45 chr3 109560013 109560368 -50039415 + Arthur1 DNA Tip100 283 656 -3291 8 1420 727 302 60 34 chr3 109560350 109560731 -50039052 + Arthur1 DNA Tip100 3459 3849 -98 8 1420 1323 172 88 13 chr3 109560737 109561012 -50038771 - ORR1B2 LTR MaLR 0 367 1 8 1420 306 0 0 0 chr3 109561089 109561123 -50038660 + (CA)n Simple_repeat Simple_repeat 2 35 0 8 1420 22 56 0 0 chr3 109563907 109563943 -50035840 + AT_rich Low_complexity Low_complexity 1 36 0 8 1420 545 315 65 33 chr3 109564164 109564348 -50035435 + MER58A DNA MER1_type 1 190 -34 8 1420 1001 206 193 63 chr3 109564537 109564868 -50034915 + ORR1D1 LTR MaLR 1 374 0 8 1420 1418 128 8 28 chr3 109566709 109566958 -50032825 + BGLII LTR ERVK 178 421 0 9 1420 213 250 0 0 chr3 109567111 109567155 -50032628 + ID4_ SINE ID 20 63 -20 9 1420 203 227 0 43 chr3 109567163 109567209 -50032574 + (CATG)n Simple_repeat Simple_repeat 3 46 0 9 1420 384 77 0 0 chr3 109567218 109567270 -50032513 + (GA)n Simple_repeat Simple_repeat 2 53 0 9 1420 868 288 5 0 chr3 109568808 109569020 -50030763 + B3 SINE B2 1 213 -3 9 1420 245 320 269 33 chr3 109570832 109571200 -50028583 - L2a LINE L2 -8 3418 2964 9 1420 259 204 0 0 chr3 109572460 109572509 -50027274 - ID_B1 SINE B4 -1 223 175 9 1420 262 300 80 0 chr3 109572466 109572566 -50027217 - PB1D10 SINE Alu -7 110 3 9 1420 464 260 94 50 chr3 109572609 109572811 -50026972 - MLT1B LTR MaLR -4 386 176 9 1420 329 307 75 45 chr3 109572839 109573040 -50026743 - MLT1A LTR MaLR -162 228 22 9 1420 248 122 0 20 chr3 109573064 109573114 -50026669 - Lx7 LINE L1 0 7696 7648 1 1420 335 236 12 0 chr3 109573194 109573440 -50026343 + (TA)n Simple_repeat Simple_repeat 1 249 0 1 1420 1682 192 0 18 chr3 109573531 109573860 -50025923 - Lx4B LINE L1 -5 7053 6731 1 1420 423 160 0 0 chr3 109573860 109573935 -50025848 + (CA)n Simple_repeat Simple_repeat 1 75 0 1 1420 324 0 0 0 chr3 109573935 109573971 -50025812 + (TG)n Simple_repeat Simple_repeat 2 37 0 1 1420 463 50 0 0 chr3 109573971 109574031 -50025752 - Lx4B LINE L1 -334 6724 6665 1 1420 668 309 80 55 chr3 109574375 109574738 -50025045 - RMER20B LTR ERVK -214 413 42 1 1420 374 0 22 0 chr3 109575481 109575527 -50024256 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 1420 866 282 71 24 chr3 109575530 109575784 -50023999 - B4 SINE B4 -26 266 1 1 1420 387 0 0 0 chr3 109575809 109575852 -50023931 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 1 1421 248 291 33 84 chr3 109577391 109577513 -50022270 - MIRb SINE MIR -29 239 115 1 1421 775 286 47 31 chr3 109577513 109577831 -50021952 - MER33 DNA MER1_type 0 324 2 1 1421 1149 238 90 116 chr3 109578449 109578809 -50020974 + MTE2b LTR MaLR 1 356 -23 1 1421 2261 96 12 58 chr3 109578809 109579152 -50020631 + ORR1A2 LTR MaLR 1 327 0 1 1421 1149 238 90 116 chr3 109579152 109579180 -50020603 + MTE2b LTR MaLR 357 379 0 1 1421 21 0 0 0 chr3 109579710 109579731 -50020052 + AT_rich Low_complexity Low_complexity 1 21 0 1 1421 248 91 23 0 chr3 109580346 109580390 -50019393 + (CAAAA)n Simple_repeat Simple_repeat 2 46 0 1 1421 21 36 0 0 chr3 109581384 109581412 -50018371 + AT_rich Low_complexity Low_complexity 1 28 0 1 1421 710 236 86 10 chr3 109581526 109581723 -50018060 + B3 SINE B2 5 216 0 1 1421 183 216 93 56 chr3 109581975 109582029 -50017754 + L4 LINE RTE 853 908 -1121 1 1421 180 111 0 0 chr3 109585838 109585865 -50013918 + (GGGGA)n Simple_repeat Simple_repeat 4 30 0 1 1421 429 20 0 0 chr3 109586984 109587034 -50012749 + (CA)n Simple_repeat Simple_repeat 1 50 0 1 1421 229 271 81 48 chr3 109589478 109589602 -50010181 + LTR33A LTR ERVL 387 514 -6 1 1421 348 273 106 53 chr3 109590549 109590593 -50009190 + MER20 DNA MER1_type 19 70 -149 1 1421 270 0 0 0 chr3 109590593 109590623 -50009160 + (TTTA)n Simple_repeat Simple_repeat 4 33 0 1 1421 348 273 106 53 chr3 109590623 109590729 -50009054 + MER20 DNA MER1_type 71 176 -43 1 1421 235 275 49 12 chr3 109591681 109591762 -50008021 + MLT1A1 LTR MaLR 323 406 -2 1 1421 227 265 43 14 chr3 109591806 109591875 -50007908 - MER117 DNA MER1_type -111 86 16 1 1421 264 202 118 97 chr3 109592006 109592099 -50007684 - U3 snRNA snRNA -122 95 1 1 1421 191 61 0 29 chr3 109592809 109592843 -50006940 + (TTTTG)n Simple_repeat Simple_repeat 5 37 0 1 1421 249 224 12 47 chr3 109592906 109593075 -50006708 + (TATG)n Simple_repeat Simple_repeat 4 166 0 1 1421 823 273 98 47 chr3 109594202 109594282 -50005501 - B4 SINE B4 0 292 222 1 1421 231 36 0 0 chr3 109594282 109594310 -50005473 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 1 1421 823 273 98 47 chr3 109594310 109594439 -50005344 - B4 SINE B4 -71 221 76 1 1421 180 0 0 0 chr3 109594439 109594459 -50005324 + (TGGGGG)n Simple_repeat Simple_repeat 2 21 0 1 1421 823 273 98 47 chr3 109594459 109594525 -50005258 - B4 SINE B4 -217 75 3 1 1421 291 345 20 33 chr3 109594757 109594907 -50004876 + MIRc SINE MIR 49 196 -72 1 1421 349 281 13 52 chr3 109596404 109596558 -50003225 + L1ME4a LINE L1 5977 6124 0 1 1421 387 0 0 0 chr3 109598143 109598186 -50001597 + (TC)n Simple_repeat Simple_repeat 1 43 0 1 1421 444 37 0 0 chr3 109599106 109599160 -50000623 + (GA)n Simple_repeat Simple_repeat 2 55 0 1 1421 21 36 0 0 chr3 109599957 109599985 -49999798 + AT_rich Low_complexity Low_complexity 1 28 0 1 1421 228 86 0 0 chr3 109599985 109600020 -49999763 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1 1421 394 110 10 0 chr3 109600020 109600083 -49999700 - B1_Mus2 SINE Alu -9 138 43 1 1421 334 288 48 56 chr3 109600113 109600238 -49999545 + L2a LINE L2 3303 3426 0 1 1421 237 367 62 36 chr3 109601035 109601230 -49998553 + MIR SINE MIR 34 233 -29 1 1421 660 115 0 0 chr3 109602646 109602750 -49997033 + (GA)n Simple_repeat Simple_repeat 1 104 0 1 1421 186 254 29 73 chr3 109603023 109603091 -49996692 + L3 LINE CR1 3000 3064 -1425 1 1421 992 191 83 0 chr3 109603339 109603543 -49996240 + URR1B DNA MER1_type 1 221 -4 1 1421 266 361 19 0 chr3 109604516 109604624 -49995159 + MIRb SINE MIR 42 151 -117 1 1421 294 358 39 69 chr3 109604910 109605114 -49994669 - MIRb SINE MIR -6 262 65 1 1421 200 284 21 83 chr3 109605898 109605994 -49993789 + L2a LINE L2 3336 3425 -1 1 1421 188 257 0 0 chr3 109606352 109606387 -49993396 + L3 LINE CR1 4279 4313 -176 1 1421 228 35 0 0 chr3 109607077 109607106 -49992677 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 1 1421 25 0 0 0 chr3 109609263 109609288 -49990495 + AT_rich Low_complexity Low_complexity 1 25 0 1 1421 345 47 0 0 chr3 109611175 109611218 -49988565 + (A)n Simple_repeat Simple_repeat 1 43 0 1 1421 745 87 17 0 chr3 109611956 109612071 -49987712 + (GA)n Simple_repeat Simple_repeat 2 118 0 1 1421 279 0 0 0 chr3 109612537 109612568 -49987215 + (CA)n Simple_repeat Simple_repeat 2 32 0 1 1421 780 182 15 0 chr3 109614148 109614280 -49985503 + ORR1D1 LTR MaLR 14 147 -227 1 1421 611 224 5 27 chr3 109614510 109614660 -49985123 + ORR1D1 LTR MaLR 231 378 0 1 1421 189 0 0 0 chr3 109615152 109615173 -49984610 + (A)n Simple_repeat Simple_repeat 1 21 0 1 1421 198 360 54 0 chr3 109615824 109615935 -49983848 - MIRb SINE MIR -27 241 125 1 1421 22 0 0 0 chr3 109617347 109617369 -49982414 + AT_rich Low_complexity Low_complexity 1 22 0 1 1421 414 0 0 0 chr3 109617773 109617819 -49981964 + (TC)n Simple_repeat Simple_repeat 1 46 0 1 1421 237 375 0 0 chr3 109617821 109617893 -49981890 - MER5A1 DNA MER1_type -80 86 15 1 1421 565 296 60 20 chr3 109617912 109618112 -49981671 - B3 SINE B2 -7 209 2 1 1421 2792 294 103 28 chr3 109619066 109619766 -49980017 + Lx8 LINE L1 6198 6917 -556 1 1421 198 0 0 0 chr3 109619766 109619788 -49979995 + (TA)n Simple_repeat Simple_repeat 2 23 0 1 1421 2792 294 103 28 chr3 109619788 109620257 -49979526 + Lx8 LINE L1 6918 7454 -19 1 1421 763 180 47 47 chr3 109620962 109621154 -49978629 - Lx4A LINE L1 0 7058 6867 1 1421 503 35 0 0 chr3 109621143 109621201 -49978582 - Lx4A LINE L1 -218 6840 6783 1 1421 661 277 99 39 chr3 109621968 109622280 -49977503 + MER58B DNA MER1_type 11 341 0 1 1421 416 311 56 120 chr3 109622747 109623014 -49976769 + B4 SINE B4 31 280 -12 1 1421 252 100 0 0 chr3 109623036 109623076 -49976707 + (TC)n Simple_repeat Simple_repeat 1 40 0 1 1421 435 19 0 0 chr3 109623139 109623191 -49976592 + (CA)n Simple_repeat Simple_repeat 2 53 0 1 1421 594 0 0 0 chr3 109623192 109623258 -49976525 + (GA)n Simple_repeat Simple_repeat 1 66 0 1 1421 261 239 85 76 chr3 109625231 109625349 -49974434 + Lx7 LINE L1 7563 7681 -15 1 1421 1495 251 34 9 chr3 109625777 109626127 -49973656 + ORR1E LTR MaLR 1 359 0 1 1421 196 342 52 26 chr3 109626311 109626464 -49973319 - L3 LINE CR1 -590 3899 3743 1 1421 429 302 67 81 chr3 109626826 109627172 -49972611 + LTR73 LTR ERV1 175 515 -57 1 1421 309 109 0 0 chr3 109627220 109627266 -49972517 + (TGAA)n Simple_repeat Simple_repeat 3 48 0 1 1421 459 100 0 0 chr3 109627268 109627338 -49972445 + (CCAA)n Simple_repeat Simple_repeat 2 71 0 1 1421 491 252 90 41 chr3 109627363 109627485 -49972298 + B1F SINE Alu 19 148 -2 1 1421 222 62 0 0 chr3 109627485 109627517 -49972266 + (CCAA)n Simple_repeat Simple_repeat 2 33 0 1 1421 180 0 0 0 chr3 109627691 109627711 -49972072 + (CA)n Simple_repeat Simple_repeat 2 21 0 1 1421 413 279 54 9 chr3 109628339 109628451 -49971332 + PB1D7 SINE Alu 4 120 0 1 1421 446 292 149 24 chr3 109629471 109629759 -49970024 + MER33 DNA MER1_type 1 324 0 1 1421 277 312 39 39 chr3 109631498 109631628 -49968155 + MIRb SINE MIR 21 150 -118 1 1421 288 53 0 0 chr3 109631915 109631953 -49967830 + (TG)n Simple_repeat Simple_repeat 2 39 0 1 1421 261 276 131 10 chr3 109633929 109634028 -49965755 - MIRc SINE MIR -149 119 9 1 1421 445 277 38 23 chr3 109634427 109634560 -49965223 - ID_B1 SINE B4 -8 216 82 1 1421 288 0 0 0 chr3 109635071 109635103 -49964680 + (GA)n Simple_repeat Simple_repeat 1 32 0 1 1421 210 118 0 0 chr3 109636806 109636840 -49962943 + (CATATA)n Simple_repeat Simple_repeat 2 35 0 1 1421 475 382 124 48 chr3 109638234 109639032 -49960751 + L2a LINE L2 2171 3029 -390 1 1421 183 375 34 0 chr3 109639301 109639389 -49960394 + L2a LINE L2 3336 3426 0 1 1421 348 64 0 0 chr3 109643609 109643656 -49956127 + (TTCC)n Simple_repeat Simple_repeat 2 48 0 1 1421 627 139 0 0 chr3 109643856 109643971 -49955812 + (GA)n Simple_repeat Simple_repeat 2 116 0 1 1421 180 0 0 0 chr3 109644552 109644572 -49955211 + (CAA)n Simple_repeat Simple_repeat 2 21 0 1 1421 313 356 0 9 chr3 109646306 109646411 -49953372 + B1F1 SINE Alu 29 132 -17 1 1421 21 82 0 0 chr3 109646424 109646473 -49953310 + AT_rich Low_complexity Low_complexity 1 49 0 1 1421 228 323 123 46 chr3 109647478 109647608 -49952175 + MIR3 SINE MIR 56 195 -13 1 1421 281 211 53 0 chr3 109648121 109648178 -49951605 + MIRm SINE MIR 93 152 -124 1 1421 23 0 0 0 chr3 109648268 109648291 -49951492 + AT_rich Low_complexity Low_complexity 1 23 0 1 1421 216 0 0 0 chr3 109654720 109654744 -49945039 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1 1421 253 330 39 0 chr3 109655841 109655944 -49943839 + MIRb SINE MIR 135 241 -27 1 1421 1437 43 11 21 chr3 109656013 109656201 -49943582 + B2_Mm2 SINE B2 3 188 -7 1 1421 207 0 0 0 chr3 109656501 109656524 -49943259 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1 1421 1120 69 0 14 chr3 109656524 109656660 -49943123 - B1_Mus1 SINE Alu -10 138 4 1 1421 1360 113 0 5 chr3 109656691 109656895 -49942888 - L1_Mus2 LINE L1 -3 6563 6361 1 1421 677 297 23 32 chr3 109656895 109657114 -49942669 - B4A SINE B4 -75 217 1 2 1421 585 0 0 0 chr3 109657317 109657382 -49942401 + (TC)n Simple_repeat Simple_repeat 2 66 0 2 1421 362 284 73 9 chr3 109658752 109658862 -49940921 - B1F SINE Alu -10 139 23 2 1421 192 209 47 0 chr3 109658909 109658952 -49940831 - MIR3 SINE MIR -31 177 133 2 1421 24 0 0 0 chr3 109659244 109659268 -49940515 + AT_rich Low_complexity Low_complexity 1 24 0 2 1421 1166 72 0 6 chr3 109659422 109659589 -49940194 + L1Md_F3 LINE L1 6419 6584 0 2 1421 651 335 83 70 chr3 109659955 109660498 -49939285 + MamRep605 Unknown Unknown 41 590 -286 2 1421 261 294 86 59 chr3 109660637 109660818 -49938965 - MIR SINE MIR -51 211 35 2 1421 636 14 0 0 chr3 109661727 109661800 -49937983 + (TTCTC)n Simple_repeat Simple_repeat 4 76 0 2 1421 10678 65 6 14 chr3 109661811 109663909 -49935874 - L1Md_F2 LINE L1 0 6582 4503 2 1421 967 102 19 6 chr3 109663909 109664067 -49935716 + (TTTTC)n Simple_repeat Simple_repeat 2 161 0 2 1421 10678 70 1 1 chr3 109664067 109664090 -49935693 - L1Md_F2 LINE L1 -1381 4502 4479 2 1421 198 362 35 28 chr3 109664107 109664252 -49935531 + MIR SINE MIR 111 256 -6 2 1421 185 375 62 8 chr3 109664331 109664460 -49935323 - L2c LINE L2 -198 3189 3054 2 1421 216 395 47 36 chr3 109664860 109665052 -49934731 + MIRb SINE MIR 47 240 -28 2 1421 231 268 18 0 chr3 109665579 109665635 -49934148 - RSINE1 SINE B4 -12 153 97 2 1421 446 322 19 77 chr3 109665677 109665936 -49933847 + CYRA11_Mm Unknown Y-chromosome 139 382 -235 2 1421 1147 206 5 14 chr3 109665719 109665940 -49933843 - URR1B DNA MER1_type -6 219 1 2 1421 4344 18 0 2 chr3 109666004 109666498 -49933285 + MT2_Mm LTR ERVL 1 493 0 2 1421 9075 65 4 4 chr3 109666663 109666698 -49933085 + L1Md_F2 LINE L1 1696 1731 -4152 2 1421 794 67 9 0 chr3 109666698 109666803 -49932980 + U6 snRNA snRNA 2 107 0 2 1421 27079 72 11 4 chr3 109666803 109670629 -49929154 + L1Md_F2 LINE L1 1732 5585 -298 2 1421 7687 68 2 3 chr3 109670630 109671627 -49928156 + L1Md_F2 LINE L1 5587 6582 0 2 1421 201 74 0 0 chr3 109671818 109671845 -49927938 + (A)n Simple_repeat Simple_repeat 1 27 0 2 1421 203 250 0 0 chr3 109672360 109672404 -49927379 + (TG)n Simple_repeat Simple_repeat 1 44 0 2 1421 1576 241 71 24 chr3 109677643 109678025 -49921758 - MTD LTR MaLR 0 419 20 2 1421 211 407 11 11 chr3 109679451 109679538 -49920245 + L2b LINE L2 3265 3351 -24 2 1421 180 111 0 0 chr3 109680285 109680312 -49919471 + (GAAAA)n Simple_repeat Simple_repeat 4 30 0 2 1421 322 280 161 0 chr3 109681073 109681191 -49918592 + Arthur1B DNA Tip100 5 141 -1084 2 1421 1344 241 63 36 chr3 109681625 109681987 -49917796 + MTEb LTR MaLR 3 374 -5 2 1421 183 380 81 24 chr3 109682288 109682412 -49917371 + MIRb SINE MIR 123 253 -15 2 1421 441 0 0 0 chr3 109685457 109685506 -49914277 + (TC)n Simple_repeat Simple_repeat 1 49 0 2 1421 455 274 21 0 chr3 109685669 109685764 -49914019 + B1_Mus1 SINE Alu 1 97 -51 2 1421 327 330 154 47 chr3 109685955 109686361 -49913422 + MLT1K LTR MaLR 115 564 -31 2 1421 200 233 0 0 chr3 109687748 109687791 -49911992 + T-rich Low_complexity Low_complexity 1 43 0 2 1421 381 244 235 0 chr3 109690824 109690939 -49908844 + B1_Mus2 SINE Alu 6 147 0 2 1421 554 316 115 62 chr3 109690956 109691635 -49908148 + L1MEc LINE L1 1046 1853 -4562 2 1421 741 84 0 0 chr3 109691645 109691764 -49908019 + (CA)n Simple_repeat Simple_repeat 2 120 0 2 1421 254 280 43 0 chr3 109692036 109692129 -49907654 + L1MEc LINE L1 2255 2351 -4049 2 1421 412 270 154 45 chr3 109692369 109692570 -49907213 + L1MEc LINE L1 4788 5002 -1317 2 1421 486 0 0 0 chr3 109692570 109692624 -49907159 + (CA)n Simple_repeat Simple_repeat 2 55 0 2 1421 412 270 154 45 chr3 109692624 109692818 -49906965 + L1MEc LINE L1 5003 5225 -1094 2 1421 198 91 0 0 chr3 109692937 109692970 -49906813 + (CA)n Simple_repeat Simple_repeat 2 34 0 2 1421 240 308 20 90 chr3 109693171 109693201 -49906582 - B4A SINE B4 0 292 271 2 1421 288 53 0 0 chr3 109693201 109693239 -49906544 + (TG)n Simple_repeat Simple_repeat 1 38 0 2 1421 240 308 20 90 chr3 109693239 109693308 -49906475 - B4A SINE B4 -22 270 200 2 1421 180 0 0 0 chr3 109693554 109693574 -49906209 + (T)n Simple_repeat Simple_repeat 1 20 0 2 1421 466 181 123 9 chr3 109693574 109693680 -49906103 - PB1D9 SINE Alu 0 120 3 2 1421 625 292 21 0 chr3 109693722 109693866 -49905917 + RSINE1 SINE B4 2 148 -17 2 1421 1793 305 32 102 chr3 109693974 109695050 -49904733 + Lx8 LINE L1 6357 7357 -116 2 1421 2467 240 95 82 chr3 109695066 109696011 -49903772 + RMER17B LTR ERVK 1 958 0 2 1421 226 229 157 0 chr3 109696017 109696087 -49903696 + Lx8 LINE L1 7385 7465 -8 2 1421 22 0 0 0 chr3 109696102 109696124 -49903659 + AT_rich Low_complexity Low_complexity 1 22 0 2 1421 452 301 74 83 chr3 109696695 109696729 -49903054 - B3 SINE B2 -1 215 188 2 1421 393 75 0 0 chr3 109696729 109696782 -49903001 + (TG)n Simple_repeat Simple_repeat 2 54 0 2 1421 562 289 11 83 chr3 109696782 109696964 -49902819 - B3A SINE B2 -29 187 1 2 1421 237 245 107 126 chr3 109699097 109699256 -49900527 - MER33 DNA MER1_type 0 324 169 2 1421 6509 108 15 1 chr3 109699448 109700426 -49899357 - Lx LINE L1 -6 6648 5657 2 1421 1884 133 3 6 chr3 109700417 109700740 -49899043 + L1_Mm LINE L1 5042 5363 -517 2 1421 5703 77 35 9 chr3 109700740 109701539 -49898244 + Lx3_Mus LINE L1 6179 6998 -11 2 1421 1708 220 11 201 chr3 109701539 109701582 -49898201 + L1_Mm LINE L1 5364 5364 -516 2 1421 1418 39 0 11 chr3 109701582 109701764 -49898019 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 2 1421 1947 146 8 55 chr3 109701764 109702182 -49897601 + L1_Mm LINE L1 5360 5678 -202 2 1421 269 273 44 22 chr3 109703972 109704062 -49895721 - MIRc SINE MIR -3 265 174 2 1421 867 253 145 27 chr3 109704241 109704538 -49895245 - MTD LTR MaLR -15 404 73 2 1421 243 0 0 0 chr3 109704538 109704565 -49895218 + (TC)n Simple_repeat Simple_repeat 2 28 0 2 1421 216 0 0 0 chr3 109704566 109704590 -49895193 + (GA)n Simple_repeat Simple_repeat 1 24 0 2 1421 192 77 0 0 chr3 109704679 109704705 -49895078 + (TG)n Simple_repeat Simple_repeat 2 27 0 2 1421 1082 127 0 6 chr3 109704725 109704899 -49894884 - L1_Mus4 LINE L1 -1 6635 6463 2 1421 2064 84 10 3 chr3 109704900 109705210 -49894573 + L1VL2 LINE L1 629 940 -5395 2 1421 543 25 25 0 chr3 109705206 109705287 -49894496 + MusHAL1 LINE L1 661 743 -1969 2 1421 301 203 0 59 chr3 109705287 109705355 -49894428 - MTD LTR MaLR -345 76 13 2 1421 284 247 33 22 chr3 109705649 109705740 -49894043 + GA-rich Low_complexity Low_complexity 2 93 0 2 1421 28 48 0 0 chr3 109706584 109706626 -49893157 + AT_rich Low_complexity Low_complexity 1 42 0 2 177 2619 88 3 37 chr3 109706946 109707322 -49892461 - RLTR8 LTR ERVK -2 363 1 2 1422 21 0 0 0 chr3 109707482 109707503 -49892280 + AT_rich Low_complexity Low_complexity 1 21 0 2 1422 2461 103 13 5 chr3 109707718 109708098 -49891685 - Lx4B LINE L1 -404 6654 6272 2 1422 2057 180 34 10 chr3 109708098 109708486 -49891297 + Lx4B LINE L1 6658 7054 -4 2 1422 186 217 79 48 chr3 109710126 109710189 -49889594 - L3 LINE CR1 -20 4469 4405 2 1422 207 125 0 0 chr3 109710989 109711029 -49888754 + (A)n Simple_repeat Simple_repeat 1 40 0 2 1422 235 259 0 0 chr3 109711215 109711269 -49888514 + T-rich Low_complexity Low_complexity 1 54 0 2 1422 3358 140 40 45 chr3 109711273 109711900 -49887883 - RMER6D LTR ERVK -96 624 1 2 1422 424 295 82 44 chr3 109711965 109711981 -49887802 + ID_B1 SINE B4 78 217 -7 2 1422 593 261 0 0 chr3 109711981 109712100 -49887683 + B1F SINE Alu 24 142 -7 2 1422 397 271 31 0 chr3 109713855 109713951 -49885832 + RSINE1 SINE B4 41 139 -26 2 1422 432 271 39 8 chr3 109714039 109714169 -49885614 - Lx9 LINE L1 -1087 6557 6424 2 1422 234 196 65 0 chr3 109714163 109714209 -49885574 + Lx9 LINE L1 6468 6516 -1128 2 1422 234 246 87 32 chr3 109714273 109714399 -49885384 - L1M2 LINE L1 -550 5741 5609 2 1422 237 318 7 22 chr3 109714411 109714546 -49885237 + L1M5 LINE L1 5086 5218 -928 2 1422 260 278 132 11 chr3 109714682 109714864 -49884919 + L1M5 LINE L1 5375 5578 -616 2 1422 290 261 0 0 chr3 109715731 109715796 -49883987 + ID2 SINE ID 4 68 -15 2 1422 880 161 7 20 chr3 109716047 109716199 -49883584 - B1_Mur4 SINE Alu 0 150 1 2 1422 713 345 46 15 chr3 109719553 109719815 -49879968 - B4A SINE B4 -2 290 21 2 1422 188 195 122 0 chr3 109723614 109723655 -49876128 - MIRc SINE MIR -102 166 121 2 1422 200 191 0 87 chr3 109723628 109723674 -49876109 - MIRm SINE MIR -126 150 109 2 1422 22 56 0 0 chr3 109724333 109724369 -49875414 + AT_rich Low_complexity Low_complexity 1 36 0 2 1422 243 283 89 24 chr3 109724467 109724590 -49875193 + L2c LINE L2 3198 3328 -59 2 1422 711 0 0 0 chr3 109724658 109724737 -49875046 + (TTCC)n Simple_repeat Simple_repeat 2 80 0 2 1422 894 146 0 17 chr3 109724745 109724919 -49874864 + CT-rich Low_complexity Low_complexity 3 173 0 2 1422 391 325 133 42 chr3 109725175 109725438 -49874345 - B4A SINE B4 0 292 6 2 1422 300 314 130 9 chr3 109725807 109726038 -49873745 - L1M4 LINE L1 -927 5219 4961 2 1422 207 288 13 27 chr3 109726045 109726120 -49873663 + CT-rich Low_complexity Low_complexity 3 76 0 2 1422 207 100 0 0 chr3 109727572 109727602 -49872181 + (CA)n Simple_repeat Simple_repeat 1 30 0 2 1422 246 62 0 0 chr3 109727855 109727887 -49871896 + (CA)n Simple_repeat Simple_repeat 2 33 0 2 1422 320 248 90 55 chr3 109727888 109728033 -49871750 + MER103 DNA DNA 11 160 -6 2 1422 252 0 0 0 chr3 109728807 109728835 -49870948 + (TC)n Simple_repeat Simple_repeat 2 29 0 2 1422 224 320 94 44 chr3 109730223 109730383 -49869400 + MIRb SINE MIR 101 268 0 2 1422 399 128 0 0 chr3 109732299 109732366 -49867417 - B3 SINE B2 -131 67 1 2 1422 1123 298 16 22 chr3 109732598 109732917 -49866866 + Lx5 LINE L1 6714 7030 -20 2 1422 605 281 65 17 chr3 109733054 109733347 -49866436 - MER44A DNA MER2_type -24 315 2 2 1422 1174 63 0 0 chr3 109734605 109734748 -49865035 - B1_Mus1 SINE Alu -4 144 2 2 1422 407 84 254 0 chr3 109734748 109734819 -49864964 - 4.5SRNA scRNA scRNA -2 92 4 2 1422 837 239 38 19 chr3 109738298 109738507 -49861276 + B3 SINE B2 4 216 0 2 1422 552 68 0 0 chr3 109738834 109738907 -49860876 + (TG)n Simple_repeat Simple_repeat 2 74 0 2 1422 808 210 60 0 chr3 109738913 109739113 -49860670 - Lx9 LINE L1 -209 7435 7224 3 1422 487 241 275 0 chr3 109739451 109739658 -49860125 - MER2 DNA MER2_type -2 343 80 3 1422 722 286 99 33 chr3 109740363 109740696 -49859087 - Tigger7 DNA MER2_type -1 2490 2136 3 1422 852 311 29 36 chr3 109740699 109740976 -49858807 - Tigger7 DNA MER2_type -2196 295 21 3 1422 225 94 0 0 chr3 109741513 109741545 -49858238 + (TGGGGG)n Simple_repeat Simple_repeat 3 34 0 3 1422 189 299 43 65 chr3 109742207 109742300 -49857483 - MIR SINE MIR -111 151 61 3 1422 5554 170 9 21 chr3 109742507 109743579 -49856204 + Lx4A LINE L1 5978 7036 -22 3 1422 275 72 0 23 chr3 109743579 109743622 -49856161 + (TAAA)n Simple_repeat Simple_repeat 4 45 0 3 1422 364 320 61 64 chr3 109743995 109744336 -49855447 - L2a LINE L2 -9 3417 3074 3 1422 23 0 0 0 chr3 109745177 109745200 -49854583 + AT_rich Low_complexity Low_complexity 1 23 0 3 1422 438 240 30 0 chr3 109746614 109746714 -49853069 - B1F SINE Alu -6 143 41 3 1422 218 253 23 35 chr3 109748620 109748706 -49851077 - L2a LINE L2 -83 3343 3259 3 1422 1138 121 91 10 chr3 109748807 109749016 -49850767 - URR1A DNA MER1_type 0 226 1 3 1422 483 18 0 0 chr3 109749058 109749114 -49850669 + (GA)n Simple_repeat Simple_repeat 2 57 0 3 1422 373 339 58 21 chr3 109749339 109749529 -49850254 - MIR SINE MIR -24 238 42 3 1422 979 170 112 10 chr3 109749853 109750049 -49849734 - B3 SINE B2 0 216 1 3 1422 1539 151 42 14 chr3 109750411 109750700 -49849083 - RMER6A LTR ERVK -7 749 453 3 1422 265 376 85 27 chr3 109750756 109751084 -49848699 + L2 LINE L2 2153 2499 -920 3 1422 530 276 127 6 chr3 109751213 109751370 -49848413 + MTEb LTR MaLR 204 379 0 3 1422 336 316 74 25 chr3 109751403 109751565 -49848218 + L1MC4 LINE L1 7459 7628 -414 3 1422 189 431 16 26 chr3 109752507 109752700 -49847083 + L2 LINE L2 2758 2948 -471 3 1422 265 286 21 52 chr3 109753809 109753905 -49845878 - PB1D9 SINE Alu -1 119 27 3 1422 1996 179 178 55 chr3 109753903 109754464 -49845319 + RMER6C LTR ERVK 61 690 0 3 1422 2122 157 10 26 chr3 109754501 109754887 -49844896 + ORR1B1 LTR MaLR 1 380 -14 3 1422 344 319 22 22 chr3 109757518 109757656 -49842127 + MIR SINE MIR 113 250 -12 3 1422 792 151 0 0 chr3 109757933 109758112 -49841671 + (TCTA)n Simple_repeat Simple_repeat 1 179 0 3 1422 277 160 0 20 chr3 109758122 109758173 -49841610 + CT-rich Low_complexity Low_complexity 1 50 0 3 1422 180 0 0 0 chr3 109758202 109758222 -49841561 + (TA)n Simple_repeat Simple_repeat 2 21 0 3 1422 21 36 0 0 chr3 109759261 109759289 -49840494 + AT_rich Low_complexity Low_complexity 1 28 0 3 1422 1109 287 55 65 chr3 109760199 109760889 -49838894 - L1MB1 LINE L1 -251 5938 5217 3 1422 2104 189 37 25 chr3 109760901 109761307 -49838476 - MTC LTR MaLR 0 421 11 3 1422 318 275 113 10 chr3 109761356 109761645 -49838138 - L1MB1 LINE L1 -721 5156 4819 3 1422 1203 308 67 88 chr3 109761802 109762938 -49836845 + Lx8 LINE L1 6223 7334 -139 3 1422 23 0 0 0 chr3 109763590 109763613 -49836170 + AT_rich Low_complexity Low_complexity 1 23 0 3 1422 885 261 24 50 chr3 109765050 109765348 -49834435 + B4A SINE B4 3 292 0 3 1422 196 336 127 0 chr3 109766436 109766546 -49833237 + MIRb SINE MIR 142 265 -3 3 1422 21 0 0 0 chr3 109766655 109766676 -49833107 + AT_rich Low_complexity Low_complexity 1 21 0 3 1422 819 335 33 10 chr3 109767054 109767361 -49832422 - Kanga1a DNA Tc2 -404 350 37 3 1422 226 261 15 44 chr3 109768364 109768432 -49831351 + MER5B DNA MER1_type 3 68 -110 3 1422 1490 64 130 48 chr3 109771565 109771796 -49827987 - L1_Mus1 LINE L1 -11 6556 6307 3 1422 349 289 63 40 chr3 109771806 109771932 -49827851 - B1_Mur3 SINE Alu 0 149 21 3 1422 236 393 0 25 chr3 109773069 109773189 -49826594 + MER5B DNA MER1_type 1 117 -61 3 1422 1158 48 0 33 chr3 109774084 109774235 -49825548 + B1_Mus2 SINE Alu 2 147 0 3 1422 379 337 39 29 chr3 109774326 109774534 -49825249 - L1M5 LINE L1 -418 5706 5497 3 1422 23 68 0 0 chr3 109774651 109774695 -49825088 + AT_rich Low_complexity Low_complexity 1 44 0 3 1422 25 0 0 0 chr3 109775244 109775269 -49824514 + AT_rich Low_complexity Low_complexity 1 25 0 3 1422 828 251 84 34 chr3 109776234 109776531 -49823252 + Lx8 LINE L1 6127 6438 -1035 3 1422 2903 265 39 23 chr3 109776562 109777438 -49822345 + Lx8 LINE L1 6514 7403 -70 3 1422 193 75 94 0 chr3 109777466 109777519 -49822264 + (TA)n Simple_repeat Simple_repeat 2 59 0 3 1422 2214 148 38 82 chr3 109778660 109779110 -49820673 + RLTR23 LTR ERV1 1 430 0 3 1422 234 125 0 0 chr3 109779365 109779413 -49820370 + (C)n Simple_repeat Simple_repeat 1 48 0 3 1422 2027 230 94 63 chr3 109779992 109780951 -49818832 - RMER17B LTR ERVK -51 857 1 3 1422 23 0 0 0 chr3 109781423 109781446 -49818337 + AT_rich Low_complexity Low_complexity 1 23 0 3 1422 828 254 62 0 chr3 109781451 109781644 -49818139 - B3 SINE B2 -11 205 1 3 1422 602 210 43 7 chr3 109782196 109782335 -49817448 - RMER10B LTR ERVL -52 346 203 3 1422 1578 240 13 10 chr3 109784449 109784845 -49814938 + Lx6 LINE L1 6491 6887 -573 3 1422 404 294 59 0 chr3 109784881 109784983 -49814800 - RSINE1 SINE B4 -55 110 3 3 1422 647 316 55 78 chr3 109786285 109786629 -49813154 + MLT1A0 LTR MaLR 1 336 -29 3 1422 188 0 0 69 chr3 109786630 109786659 -49813124 + (TTTTTG)n Simple_repeat Simple_repeat 2 28 0 3 1422 213 154 0 0 chr3 109787285 109787324 -49812459 + T-rich Low_complexity Low_complexity 1 39 0 3 1422 408 308 86 43 chr3 109787588 109787751 -49812032 + Charlie10a DNA MER1_type 55 224 -56 3 1422 410 0 20 0 chr3 109788305 109788355 -49811428 + (TA)n Simple_repeat Simple_repeat 2 52 0 3 1422 423 0 0 0 chr3 109788674 109788721 -49811062 + (TTTA)n Simple_repeat Simple_repeat 4 50 0 3 1422 1045 120 0 0 chr3 109788722 109788864 -49810919 - B1_Mur4 SINE Alu -6 144 3 3 1422 27 29 0 0 chr3 109788875 109788909 -49810874 + AT_rich Low_complexity Low_complexity 1 34 0 3 1422 23 0 0 0 chr3 109789435 109789458 -49810325 + AT_rich Low_complexity Low_complexity 1 23 0 3 1422 1035 196 20 74 chr3 109789628 109789925 -49809858 + Lx9 LINE L1 7197 7477 -167 3 1422 925 227 25 64 chr3 109789985 109790220 -49809563 - URR1A DNA MER1_type 0 226 1 3 1422 34132 67 3 15 chr3 109790524 109796697 -49803086 - L1Md_F2 LINE L1 -8 6574 478 3 1422 1269 98 44 0 chr3 109796767 109796950 -49802833 - B2_Mm2 SINE B2 -2 193 3 3 1422 22 0 0 0 chr3 109797956 109797978 -49801805 + AT_rich Low_complexity Low_complexity 1 22 0 3 1422 216 0 0 0 chr3 109798517 109798541 -49801242 + (A)n Simple_repeat Simple_repeat 1 24 0 3 1422 309 321 18 65 chr3 109801011 109801181 -49798602 + MIR SINE MIR 74 235 -27 3 1422 1002 121 0 0 chr3 109801345 109801502 -49798281 + (GAAA)n Simple_repeat Simple_repeat 4 160 0 3 1422 243 315 129 11 chr3 109802078 109802171 -49797612 - B4 SINE B4 -2 290 187 3 1422 309 250 26 13 chr3 109802189 109802266 -49797517 - B4 SINE B4 -206 86 9 3 1422 318 254 14 0 chr3 109804689 109804760 -49795023 + BC1_Mm scRNA scRNA 8 79 -73 3 1422 21 0 0 0 chr3 109804847 109804868 -49794915 + AT_rich Low_complexity Low_complexity 1 21 0 3 1422 245 154 0 37 chr3 109805235 109805289 -49794494 + GA-rich Low_complexity Low_complexity 1 52 0 3 1422 304 316 0 10 chr3 109805582 109805678 -49794105 + Helitron2Na_Mam RC Helitron? 178 272 -52 3 1422 239 386 78 22 chr3 109806131 109806311 -49793472 - L2a LINE L2 -194 3232 3043 3 1422 1599 270 30 7 chr3 109806397 109806800 -49792983 + MTD LTR MaLR 5 416 -3 3 1422 714 137 0 0 chr3 109806908 109807032 -49792751 - Lx LINE L1 -1 6653 6530 3 1422 6983 116 29 4 chr3 109807024 109808141 -49791642 - Lx2 LINE L1 -193 6804 5660 3 1422 249 271 0 0 chr3 109808321 109808369 -49791414 + ID4_ SINE ID 12 59 -24 3 1422 438 20 0 0 chr3 109808370 109808421 -49791362 + (CA)n Simple_repeat Simple_repeat 2 52 0 3 1422 858 97 0 0 chr3 109808421 109808564 -49791219 + (GA)n Simple_repeat Simple_repeat 2 145 0 3 1422 360 0 0 0 chr3 109809340 109809380 -49790403 + (CAAA)n Simple_repeat Simple_repeat 2 41 0 3 1422 899 49 32 16 chr3 109809935 109810060 -49789723 - B1_Mus2 SINE Alu 0 147 21 3 1422 203 250 62 0 chr3 109810952 109811016 -49788767 - MIRc SINE MIR -115 153 86 3 1422 258 32 0 0 chr3 109812977 109813008 -49786775 + (TG)n Simple_repeat Simple_repeat 1 31 0 3 1422 27 29 0 0 chr3 109813276 109813310 -49786473 + AT_rich Low_complexity Low_complexity 1 34 0 3 1422 233 276 0 50 chr3 109813824 109813904 -49785879 + GA-rich Low_complexity Low_complexity 4 79 0 3 1422 4736 20 0 0 chr3 109815385 109815979 -49783804 - L1Md_A LINE L1 0 6582 6044 3 1422 4913 6 0 0 chr3 109815979 109816691 -49783092 + L1Md_A LINE L1 5309 6020 -562 3 1422 35 41 0 0 chr3 109817202 109817251 -49782532 + AT_rich Low_complexity Low_complexity 1 49 0 3 1422 431 321 62 17 chr3 109817334 109817542 -49782241 + L2a LINE L2 3194 3426 0 3 1422 230 56 28 0 chr3 109817851 109817887 -49781896 + (TG)n Simple_repeat Simple_repeat 2 38 0 3 1422 1368 245 58 94 chr3 109817887 109818333 -49781450 - RLTR23 LTR ERV1 0 430 1 3 1422 222 107 0 51 chr3 109818333 109818392 -49781391 + (TG)n Simple_repeat Simple_repeat 2 57 0 3 1422 234 128 0 0 chr3 109820140 109820179 -49779604 + (CA)n Simple_repeat Simple_repeat 2 40 0 3 1422 282 29 0 0 chr3 109820179 109820213 -49779570 + (GA)n Simple_repeat Simple_repeat 2 36 0 3 1422 450 288 52 12 chr3 109820918 109821090 -49778693 + B3A SINE B2 4 182 -16 3 1422 352 333 38 23 chr3 109821921 109822053 -49777730 + B4A SINE B4 46 179 -113 3 1422 563 209 22 18 chr3 109822100 109822237 -49777546 + MTD LTR MaLR 238 405 -14 3 1422 306 266 31 117 chr3 109823143 109823305 -49776478 - HAL1-3A_ME LINE L1 -735 2123 1976 3 1422 380 134 22 66 chr3 109823343 109823526 -49776257 + (TG)n Simple_repeat Simple_repeat 1 175 0 3 1422 262 366 0 0 chr3 109823546 109823617 -49776166 - ID4 SINE ID -6 77 7 4 1422 21 0 0 0 chr3 109826649 109826670 -49773113 + AT_rich Low_complexity Low_complexity 1 21 0 4 1422 51 17 0 0 chr3 109827015 109827073 -49772710 + AT_rich Low_complexity Low_complexity 1 58 0 4 1422 638 47 374 0 chr3 109827332 109827439 -49772344 - B1_Mm SINE Alu 0 147 1 4 1422 220 329 0 0 chr3 109827595 109827674 -49772109 + CT-rich Low_complexity Low_complexity 3 81 0 4 1422 540 278 7 27 chr3 109827683 109827831 -49771952 - B1F SINE Alu 0 149 5 4 1422 276 360 34 0 chr3 109828418 109828565 -49771218 + MER103 DNA DNA 13 164 -2 4 1422 332 337 20 10 chr3 109829226 109829325 -49770458 + ID_B1 SINE B4 113 212 -12 4 1422 1374 50 0 0 chr3 109829325 109829504 -49770279 + (TAGA)n Simple_repeat Simple_repeat 2 180 0 4 1422 618 113 26 0 chr3 109829515 109829630 -49770153 + (TGGA)n Simple_repeat Simple_repeat 4 121 0 4 1422 1113 256 40 67 chr3 109833584 109833956 -49765827 - MTEa LTR MaLR 0 379 18 4 1422 1056 196 15 20 chr3 109834843 109835046 -49764737 + URR1A DNA MER1_type 25 226 0 4 1422 1375 199 81 19 chr3 109835332 109835640 -49764143 + ORR1D1 LTR MaLR 5 331 -43 4 1422 21 71 0 0 chr3 109836532 109836574 -49763209 + AT_rich Low_complexity Low_complexity 1 42 0 4 1422 255 261 0 14 chr3 109836958 109837028 -49762755 + ID4_ SINE ID 5 73 -10 4 1422 588 270 26 13 chr3 109837887 109838041 -49761742 + ID_B1 SINE B4 4 159 -65 4 1423 348 24 0 0 chr3 109838369 109838410 -49761373 + (TTTTG)n Simple_repeat Simple_repeat 2 42 0 4 1423 24 32 0 0 chr3 109838816 109838847 -49760936 + AT_rich Low_complexity Low_complexity 1 31 0 4 1423 23 0 0 0 chr3 109838872 109838895 -49760888 + AT_rich Low_complexity Low_complexity 1 23 0 4 1423 322 214 14 0 chr3 109839103 109839173 -49760610 - ID4_ SINE ID -10 73 3 4 1423 332 349 31 8 chr3 109839183 109839313 -49760470 - B1F SINE Alu -7 142 10 4 1423 208 329 52 13 chr3 109839318 109839395 -49760388 - MIRm SINE MIR -5 271 192 4 1423 398 345 70 40 chr3 109839544 109839843 -49759940 - L1MCa LINE L1 -4248 2260 1953 4 1423 1412 205 166 3 chr3 109839961 109840323 -49759460 - MTC LTR MaLR 0 421 1 4 1423 303 321 132 48 chr3 109840382 109840631 -49759152 - L1MCa LINE L1 -4831 1677 1408 4 1423 408 312 167 10 chr3 109841457 109841661 -49758122 + MIRb SINE MIR 33 268 0 4 1423 287 309 142 64 chr3 109841901 109842104 -49757679 + MIRb SINE MIR 28 245 -23 4 1423 467 312 18 0 chr3 109843059 109843229 -49756554 + (TG)n Simple_repeat Simple_repeat 2 174 0 4 1423 408 20 0 0 chr3 109843267 109843316 -49756467 + (TG)n Simple_repeat Simple_repeat 2 50 0 4 1423 1679 170 152 27 chr3 109844460 109844834 -49754949 + MTC LTR MaLR 1 421 0 4 1423 180 0 0 0 chr3 109844873 109844893 -49754890 + (A)n Simple_repeat Simple_repeat 1 20 0 4 1423 189 0 0 0 chr3 109844967 109844988 -49754795 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 4 1423 413 228 0 5 chr3 109845021 109845100 -49754683 + B3A SINE B2 81 156 -60 4 1423 342 0 0 0 chr3 109845100 109845138 -49754645 + (CA)n Simple_repeat Simple_repeat 2 39 0 4 1423 377 292 0 54 chr3 109845138 109845171 -49754612 + B3 SINE B2 157 186 -30 4 1423 601 309 30 12 chr3 109845528 109845695 -49754088 + B3A SINE B2 2 171 -27 4 1423 249 82 32 32 chr3 109846284 109846347 -49753436 + (CAAA)n Simple_repeat Simple_repeat 2 64 0 4 1423 3642 152 41 21 chr3 109847656 109848315 -49751468 + RLTR33 LTR ERVK 3 674 -4 4 1423 1116 75 0 0 chr3 109848337 109848497 -49751286 + (TG)n Simple_repeat Simple_repeat 2 161 0 4 1423 1011 149 26 36 chr3 109848596 109848791 -49750992 - B2_Mm2 SINE B2 -2 193 1 4 1423 339 25 0 0 chr3 109849742 109849782 -49750001 + (TG)n Simple_repeat Simple_repeat 2 41 0 4 1423 399 21 0 0 chr3 109850094 109850142 -49749641 + (CA)n Simple_repeat Simple_repeat 2 49 0 4 1423 241 349 72 65 chr3 109850741 109850879 -49748904 + LTR88c LTR Genie? 714 852 -10 4 1423 21 0 0 0 chr3 109851623 109851644 -49748139 + AT_rich Low_complexity Low_complexity 1 21 0 4 1423 203 333 0 0 chr3 109851925 109851982 -49747801 - MIRb SINE MIR -176 92 36 4 1423 213 39 0 0 chr3 109852476 109852502 -49747281 + (A)n Simple_repeat Simple_repeat 1 26 0 4 1423 243 125 0 0 chr3 109852576 109852616 -49747167 + (TG)n Simple_repeat Simple_repeat 1 40 0 4 1423 198 0 0 0 chr3 109852616 109852637 -49747146 + (GA)n Simple_repeat Simple_repeat 1 22 0 4 1423 622 331 84 33 chr3 109852654 109852929 -49746854 - B4 SINE B4 -2 290 2 4 1423 252 326 31 0 chr3 109853655 109853753 -49746030 + ORR1E LTR MaLR 1 101 -258 4 1423 1171 75 0 0 chr3 109854408 109854555 -49745228 + B1_Mus1 SINE Alu 2 148 0 4 1423 227 259 0 11 chr3 109855452 109855542 -49744241 + T-rich Low_complexity Low_complexity 5 93 0 4 1423 505 360 45 37 chr3 109855655 109855897 -49743886 - B4 SINE B4 0 292 49 4 1423 4929 97 64 0 chr3 109856479 109857171 -49742612 - RMER19A LTR ERVK -1 736 1 4 1423 435 325 46 29 chr3 109857966 109858140 -49741643 - MIRb SINE MIR -32 236 60 4 1423 336 327 167 23 chr3 109858317 109858533 -49741250 - MIR SINE MIR -3 259 13 4 1423 1132 186 45 73 chr3 109859351 109859665 -49740118 - Lx7 LINE L1 0 7696 7392 4 1423 411 21 0 0 chr3 109859668 109859716 -49740067 + (TG)n Simple_repeat Simple_repeat 1 48 0 4 1423 33817 35 0 0 chr3 109860206 109865904 -49733879 + L1Md_T LINE L1 1 5589 -297 4 1423 9008 6 0 0 chr3 109865904 109866900 -49732883 + L1Md_T LINE L1 5590 6585 0 4 1423 249 122 0 0 chr3 109866906 109866947 -49732836 + ORR1A2 LTR MaLR 340 380 -14 4 1423 508 305 108 19 chr3 109867059 109867273 -49732510 + MIRb SINE MIR 25 257 -11 4 1423 203 200 0 22 chr3 109868199 109868245 -49731538 + (CATATA)n Simple_repeat Simple_repeat 2 46 0 4 1423 197 83 0 27 chr3 109869345 109869382 -49730401 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 4 1423 1300 91 16 5 chr3 109869406 109869593 -49730190 + ORR1A2-int LTR MaLR 933 1121 -842 4 1423 2049 143 0 6 chr3 109869592 109869916 -49729867 + ORR1A2-int LTR MaLR 1642 1963 0 4 1423 1675 143 11 0 chr3 109869916 109870182 -49729601 + ORR1A2 LTR MaLR 1 269 -58 4 1423 328 292 35 26 chr3 109871726 109871842 -49727941 + PB1D10 SINE Alu 1 117 0 4 1423 396 138 0 0 chr3 109872386 109872451 -49727332 + (TCTCTG)n Simple_repeat Simple_repeat 2 66 0 4 1423 1218 96 0 0 chr3 109872613 109873109 -49726674 + (TG)n Simple_repeat Simple_repeat 1 496 0 4 1423 397 308 150 0 chr3 109873110 109873230 -49726553 - RSINE1 SINE B4 -24 141 4 4 1423 337 378 59 21 chr3 109874193 109874482 -49725301 + L1ME3A LINE L1 5360 5659 -514 4 1423 275 80 0 39 chr3 109874490 109874542 -49725241 + (CAAAA)n Simple_repeat Simple_repeat 2 51 0 4 1423 240 326 46 83 chr3 109874645 109874996 -49724787 + L1ME3A LINE L1 5810 6147 -26 4 1423 845 178 0 11 chr3 109875460 109875642 -49724141 + CT-rich Low_complexity Low_complexity 1 180 0 4 1423 288 0 0 0 chr3 109875824 109875856 -49723927 + (TTG)n Simple_repeat Simple_repeat 2 33 0 4 1423 380 274 34 45 chr3 109875909 109876085 -49723698 + L1MCb LINE L1 187 360 -5685 4 1423 480 346 122 39 chr3 109876306 109876520 -49723263 - MLT1H1 LTR MaLR -6 549 324 4 1423 994 170 120 0 chr3 109876520 109876720 -49723063 - URR1A DNA MER1_type -1 225 2 4 1423 480 346 122 39 chr3 109876720 109876842 -49722941 - MLT1H1 LTR MaLR -232 323 185 4 1423 388 304 0 0 chr3 109877543 109877655 -49722128 - Lx9 LINE L1 -364 7280 7169 4 1423 494 217 35 71 chr3 109877653 109877822 -49721961 + Lx9 LINE L1 7400 7562 -82 4 1423 327 49 0 0 chr3 109877844 109877885 -49721898 + (TA)n Simple_repeat Simple_repeat 2 42 0 4 1423 387 0 0 0 chr3 109877885 109877927 -49721856 + (TG)n Simple_repeat Simple_repeat 2 44 0 4 1423 1734 299 99 16 chr3 109878811 109879376 -49720407 - MTEb-int LTR MaLR -29 1551 940 4 1423 1209 284 7 3 chr3 109879373 109879673 -49720110 - MTEb-int LTR MaLR -1075 505 205 4 1423 396 0 0 0 chr3 109879691 109879735 -49720048 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 4 1423 1067 67 22 0 chr3 109879735 109879869 -49719914 - B1_Mm SINE Alu -10 137 1 4 1423 558 315 5 168 chr3 109879905 109880119 -49719664 - B3A SINE B2 -34 182 4 4 1423 619 249 35 30 chr3 109880119 109880317 -49719466 - MTEb-int LTR MaLR -1363 217 19 4 1423 583 320 46 57 chr3 109880341 109880707 -49719076 - MTEb LTR MaLR 0 379 1 4 1423 200 214 0 0 chr3 109881089 109881131 -49718652 + L2a LINE L2 3385 3426 0 4 1423 272 292 57 49 chr3 109881823 109882007 -49717776 - MIRm SINE MIR -17 191 3 4 1423 180 311 16 0 chr3 109882829 109882890 -49716893 + L3b LINE CR1 421 482 0 4 1423 186 43 0 0 chr3 109883238 109883261 -49716522 + (CA)n Simple_repeat Simple_repeat 2 24 0 4 1423 555 173 0 0 chr3 109883525 109883635 -49716148 + (CA)n Simple_repeat Simple_repeat 1 110 0 4 1423 360 147 103 0 chr3 109883649 109883717 -49716066 + HAL1-3A_ME LINE L1 1975 2049 -809 4 1423 231 36 0 0 chr3 109884251 109884279 -49715504 + (TA)n Simple_repeat Simple_repeat 2 29 0 4 1423 4361 196 23 21 chr3 109884347 109885214 -49714569 + Lx5 LINE L1 6182 7050 0 4 1423 3472 167 91 5 chr3 109886522 109887185 -49712598 - RMER6D LTR ERVK 0 720 1 4 1423 548 264 8 40 chr3 109887206 109887332 -49712451 + RSINE1 SINE B4 3 124 -41 4 1423 189 74 0 0 chr3 109887332 109887359 -49712424 + (CA)n Simple_repeat Simple_repeat 1 27 0 4 1423 358 330 58 29 chr3 109887421 109887699 -49712084 - L1MB3 LINE L1 -206 5977 5692 4 1423 738 271 92 33 chr3 109889031 109889302 -49710481 - B4 SINE B4 -4 288 2 4 1423 1052 269 35 54 chr3 109889397 109889712 -49710071 + MTEa LTR MaLR 1 309 -70 4 1423 186 26 50 50 chr3 109891037 109891077 -49708706 + (TTA)n Simple_repeat Simple_repeat 1 40 0 4 1423 253 347 58 117 chr3 109891257 109891461 -49708322 - L2 LINE L2 -470 2949 2759 4 1423 759 246 62 5 chr3 109891461 109891653 -49708130 + B3 SINE B2 4 206 -10 4 1423 253 347 58 117 chr3 109891653 109891807 -49707976 - L2 LINE L2 -661 2758 2612 4 1423 622 318 69 83 chr3 109892015 109892340 -49707443 + MLT1C LTR MaLR 6 343 -124 4 1423 324 318 0 22 chr3 109892518 109892608 -49707175 - B3 SINE B2 -128 88 1 4 1423 641 338 121 71 chr3 109892890 109893401 -49706382 + MLT1C-int LTR MaLR 474 1081 -408 4 1423 7670 25 3 0 chr3 109893401 109894293 -49705490 + L1Md_F3 LINE L1 5676 6570 -14 4 1423 561 315 168 62 chr3 109894293 109894465 -49705318 + MLT1C-int LTR MaLR 1082 1258 -231 4 1423 948 126 0 0 chr3 109894465 109894600 -49705183 + B1_Mus1 SINE Alu 2 136 -12 4 1423 324 0 0 0 chr3 109894601 109894637 -49705146 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 5 1423 327 301 188 65 chr3 109894637 109894779 -49705004 + MLT1C-int LTR MaLR 1213 1381 -28 4 1423 582 54 0 0 chr3 109895085 109895159 -49704624 + (TA)n Simple_repeat Simple_repeat 2 75 0 5 1423 244 19 18 70 chr3 109895448 109895505 -49704278 + (TTATA)n Simple_repeat Simple_repeat 3 56 0 5 1423 345 47 0 0 chr3 109895514 109895557 -49704226 + (CA)n Simple_repeat Simple_repeat 2 44 0 5 1423 216 0 0 0 chr3 109897744 109897768 -49702015 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 5 1423 1271 298 32 0 chr3 109897939 109898251 -49701532 - MTEa LTR MaLR -8 371 50 5 1423 477 0 0 0 chr3 109898824 109898877 -49700906 + (TA)n Simple_repeat Simple_repeat 2 54 0 5 1423 670 292 27 0 chr3 109899456 109899641 -49700142 + B3A SINE B2 1 190 -8 5 1423 215 250 0 0 chr3 109899720 109899768 -49700015 - ID4_ SINE ID -33 50 3 5 1423 233 333 0 37 chr3 109899784 109899865 -49699918 - ID4 SINE ID 0 83 6 5 1423 300 273 0 0 chr3 109899965 109900031 -49699752 + ID4_ SINE ID 4 69 -14 5 1423 21 0 0 0 chr3 109900645 109900666 -49699117 + AT_rich Low_complexity Low_complexity 1 21 0 5 1423 3792 58 2 4 chr3 109900756 109901237 -49698546 - L1_Mus2 LINE L1 0 6566 6087 5 1423 3999 60 7 0 chr3 109901237 109901920 -49697863 + L1_Mus2 LINE L1 5395 6084 -482 5 1423 395 353 111 22 chr3 109902117 109902476 -49697307 + HAL1 LINE L1 1440 1830 -677 5 1423 615 325 44 10 chr3 109903556 109903761 -49696022 + MER20 DNA MER1_type 8 219 0 5 1423 1252 122 16 0 chr3 109904953 109905141 -49694642 + B2_Mm2 SINE B2 3 193 -2 5 1423 225 178 0 0 chr3 109905872 109905917 -49693866 + (TTCA)n Simple_repeat Simple_repeat 1 45 0 5 1423 180 158 0 0 chr3 109906661 109906699 -49693084 + (TTTA)n Simple_repeat Simple_repeat 1 38 0 5 1423 204 67 0 0 chr3 109906700 109906730 -49693053 + (TTCC)n Simple_repeat Simple_repeat 2 31 0 5 1423 243 315 65 58 chr3 109909232 109909370 -49690413 + RMER12 LTR ERVK 713 851 -471 5 1423 379 259 24 6 chr3 109909370 109909537 -49690246 + (TA)n Simple_repeat Simple_repeat 2 171 0 5 1423 38000 29 0 0 chr3 109910115 109916343 -49683440 - L1Md_T LINE L1 0 6585 262 5 1423 546 310 119 35 chr3 109916770 109917002 -49682781 + B4A SINE B4 6 261 -31 5 1423 252 0 0 0 chr3 109917002 109917030 -49682753 + (TC)n Simple_repeat Simple_repeat 1 28 0 5 1423 270 0 0 0 chr3 109917030 109917059 -49682724 + (CA)n Simple_repeat Simple_repeat 1 30 0 5 1423 546 310 119 35 chr3 109917059 109917086 -49682697 + B4A SINE B4 262 287 -5 5 1423 320 366 46 11 chr3 109917179 109917353 -49682430 + MLT2C1 LTR ERVL 1 180 -217 5 1423 867 164 0 7 chr3 109917388 109917529 -49682254 - B1_Mus1 SINE Alu -8 140 1 5 1423 230 344 43 58 chr3 109917541 109917680 -49682103 + MLT2C1 LTR ERVL 178 314 -83 5 1423 2546 203 11 4 chr3 109918691 109919166 -49680617 + Lx6 LINE L1 6561 7038 -422 5 1423 794 191 331 12 chr3 109919187 109919519 -49680264 + Lx7 LINE L1 7110 7547 -149 5 1423 243 321 103 36 chr3 109920418 109920583 -49679200 + MIRb SINE MIR 64 239 -29 5 1423 992 259 97 51 chr3 109920854 109921187 -49678596 - MTD LTR MaLR -43 376 1 5 1423 2029 325 34 50 chr3 109921295 109921869 -49677914 + Lx8 LINE L1 6461 7025 -448 5 1423 1082 124 49 27 chr3 109921869 109922052 -49677731 + B2_Mm1a SINE B2 4 190 -3 5 1423 2029 325 34 50 chr3 109922052 109922358 -49677425 + Lx8 LINE L1 7026 7327 -146 5 1423 21 36 0 0 chr3 109922864 109922892 -49676891 + AT_rich Low_complexity Low_complexity 1 28 0 5 1423 276 349 111 29 chr3 109922927 109923098 -49676685 - L2b LINE L2 0 3375 3191 5 1423 30 27 0 0 chr3 109926343 109926380 -49673403 + AT_rich Low_complexity Low_complexity 1 37 0 5 1423 742 348 92 6 chr3 109927336 109927651 -49672132 - MER2 DNA MER2_type 0 345 4 5 1423 257 135 19 0 chr3 109927683 109927735 -49672048 + (TATATG)n Simple_repeat Simple_repeat 2 54 0 5 1423 460 331 73 98 chr3 109927781 109928177 -49671606 - L2b LINE L2 -656 2763 2378 5 1423 23 0 0 0 chr3 109928523 109928546 -49671237 + AT_rich Low_complexity Low_complexity 1 23 0 5 1423 234 81 0 0 chr3 109928718 109928755 -49671028 + (A)n Simple_repeat Simple_repeat 1 37 0 5 1423 455 219 0 6 chr3 109929074 109929253 -49670530 + (TA)n Simple_repeat Simple_repeat 1 178 0 5 1423 1154 21 0 46 chr3 109930419 109930571 -49669212 + B1_Mus2 SINE Alu 2 146 -1 5 1423 510 17 0 0 chr3 109930773 109930832 -49668951 + (CA)n Simple_repeat Simple_repeat 2 60 0 5 1423 22 56 0 0 chr3 109931130 109931166 -49668617 + AT_rich Low_complexity Low_complexity 1 36 0 5 1423 273 250 0 0 chr3 109932299 109932351 -49667432 - ID4_ SINE ID -30 53 2 5 1423 505 259 14 49 chr3 109932851 109932993 -49666790 + RSINE1 SINE B4 1 137 -28 5 1423 21 0 0 0 chr3 109933489 109933510 -49666273 + AT_rich Low_complexity Low_complexity 1 21 0 5 1423 192 77 0 0 chr3 109934812 109934838 -49664945 + (TTTG)n Simple_repeat Simple_repeat 1 26 0 5 1423 581 198 0 0 chr3 109937683 109937784 -49661999 + B1_Mus2 SINE Alu 46 146 -1 5 1423 399 21 0 0 chr3 109937883 109937931 -49661852 + (TG)n Simple_repeat Simple_repeat 2 49 0 5 1423 198 0 0 0 chr3 109938499 109938521 -49661262 + (TG)n Simple_repeat Simple_repeat 1 22 0 5 1423 243 88 0 0 chr3 109942339 109942373 -49657410 + (GA)n Simple_repeat Simple_repeat 2 35 0 5 1423 22 0 0 0 chr3 109942396 109942418 -49657365 + AT_rich Low_complexity Low_complexity 1 22 0 5 1423 408 20 0 0 chr3 109943333 109943382 -49656401 + (CA)n Simple_repeat Simple_repeat 1 49 0 5 1423 333 62 0 0 chr3 109943642 109943690 -49656093 + (A)n Simple_repeat Simple_repeat 1 48 0 5 1423 198 103 0 0 chr3 109945152 109945181 -49654602 + (A)n Simple_repeat Simple_repeat 1 29 0 5 1423 21 95 0 0 chr3 109945530 109945593 -49654190 + GC_rich Low_complexity Low_complexity 1 63 0 5 1423 213 213 0 21 chr3 109945950 109945998 -49653785 + G-rich Low_complexity Low_complexity 6 52 0 5 1423 24 0 0 0 chr3 109946082 109946106 -49653677 + GC_rich Low_complexity Low_complexity 1 24 0 5 1423 194 0 39 0 chr3 109946144 109946170 -49653613 + (TC)n Simple_repeat Simple_repeat 2 28 0 5 1423 26 0 0 0 chr3 109946540 109946566 -49653217 + GC_rich Low_complexity Low_complexity 1 26 0 5 1423 522 0 0 0 chr3 109947540 109947598 -49652185 + (TG)n Simple_repeat Simple_repeat 2 59 0 5 1423 198 0 0 0 chr3 109948412 109948434 -49651349 + (T)n Simple_repeat Simple_repeat 1 22 0 5 1423 344 22 0 22 chr3 109949582 109949628 -49650155 + (TAA)n Simple_repeat Simple_repeat 2 46 0 5 1423 511 363 39 45 chr3 109949628 109949914 -49649869 - MLT1A0 LTR MaLR -72 293 10 5 1423 252 0 0 0 chr3 109950295 109950323 -49649460 + (CAAAC)n Simple_repeat Simple_repeat 2 29 0 5 1423 220 320 87 39 chr3 109952155 109952282 -49647501 - L2c LINE L2 -2 3385 3253 5 1423 807 144 7 13 chr3 109952753 109952908 -49646875 + Lx3A LINE L1 6823 6976 -5 5 1423 731 207 28 0 chr3 109953318 109953463 -49646320 + B1_Mur1 SINE Alu 1 149 0 5 1423 22 0 0 0 chr3 109953619 109953641 -49646142 + AT_rich Low_complexity Low_complexity 1 22 0 5 1423 834 181 0 0 chr3 109953956 109954184 -49645599 + (CA)n Simple_repeat Simple_repeat 1 228 0 5 1423 189 178 0 0 chr3 109954335 109954380 -49645403 + (CAGA)n Simple_repeat Simple_repeat 2 46 0 5 1423 283 324 24 74 chr3 109955381 109955542 -49644241 + MIRb SINE MIR 46 205 -63 5 1423 188 278 51 77 chr3 109956148 109956265 -49643518 - MIRc SINE MIR -114 154 41 5 1423 4069 217 35 10 chr3 109956461 109957326 -49642457 + Lx5 LINE L1 6164 7049 -1 5 1423 686 199 37 0 chr3 109957406 109957542 -49642241 - B1_Mus1 SINE Alu -7 141 1 5 1423 951 57 0 0 chr3 109958210 109958332 -49641451 + (CATATA)n Simple_repeat Simple_repeat 1 122 0 5 1423 268 239 0 77 chr3 109959436 109959511 -49640272 - B1_Mus2 SINE Alu -78 71 3 5 1423 603 0 0 0 chr3 109959526 109959593 -49640190 + (TTCC)n Simple_repeat Simple_repeat 4 70 0 5 1423 531 0 0 0 chr3 109959594 109959653 -49640130 + (TCTA)n Simple_repeat Simple_repeat 2 60 0 5 1423 680 308 5 66 chr3 109959658 109959856 -49639927 - ID_B1 SINE B4 -6 218 33 5 1423 372 265 12 0 chr3 109960055 109960138 -49639645 - B4A SINE B4 -208 84 1 5 1423 464 281 79 57 chr3 109960232 109960409 -49639374 + B3A SINE B2 2 182 -16 5 1423 531 0 0 0 chr3 109961530 109961589 -49638194 + (CA)n Simple_repeat Simple_repeat 2 60 0 5 1423 495 0 0 0 chr3 109961589 109961643 -49638140 + (GA)n Simple_repeat Simple_repeat 2 56 0 5 1423 1315 194 171 12 chr3 109961721 109962049 -49637734 + Lx2B LINE L1 6616 6995 -5 5 1423 829 249 33 9 chr3 109962282 109962493 -49637290 + B3 SINE B2 1 216 0 5 1423 416 388 60 14 chr3 109962881 109963098 -49636685 + MLT1J LTR MaLR 175 401 -111 5 1423 204 179 0 0 chr3 109963241 109963280 -49636503 + (TAA)n Simple_repeat Simple_repeat 2 40 0 5 1423 9680 13 1 0 chr3 109963352 109965200 -49634583 - L1Md_A LINE L1 0 6582 4734 5 1423 262 0 0 0 chr3 109965201 109965232 -49634551 + L1Md_A LINE L1 4707 4737 -1146 5 1423 2846 73 36 3 chr3 109965232 109965619 -49634164 - MTB LTR MaLR 0 400 1 5 1423 312 353 70 11 chr3 109965643 109965829 -49633954 + B4A SINE B4 96 292 0 5 1423 650 308 98 35 chr3 109966140 109966396 -49633387 + B4 SINE B4 14 285 -7 5 1423 918 284 60 20 chr3 109966945 109967247 -49632536 + MER2 DNA MER2_type 32 345 0 5 1423 368 345 0 8 chr3 109967441 109967558 -49632225 + B1_Mur1 SINE Alu 17 132 -17 5 1423 185 140 21 85 chr3 109967928 109967975 -49631808 - L3 LINE CR1 -1602 2887 2844 5 1424 237 33 0 0 chr3 109969589 109969619 -49630164 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 5 1424 210 71 0 0 chr3 109972177 109972205 -49627578 + (TCTG)n Simple_repeat Simple_repeat 4 31 0 5 1424 662 257 7 7 chr3 109972207 109972348 -49627435 - B1_Mur1 SINE Alu -7 142 2 5 1424 372 331 40 32 chr3 109972236 109972361 -49627422 - B4 SINE B4 -90 202 77 5 1424 374 239 45 0 chr3 109972545 109972633 -49627150 + RMER30 DNA MER1_type 12 103 -99 6 1424 216 0 0 0 chr3 109972658 109972682 -49627101 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 6 1424 902 171 7 33 chr3 109973220 109973371 -49626412 + B1_Mur3 SINE Alu 2 148 -1 6 1424 950 152 6 0 chr3 109973391 109973568 -49626215 + GA-rich Low_complexity Low_complexity 2 179 0 6 1424 245 339 23 55 chr3 109973595 109973723 -49626060 + RMER15 LTR ERVL 438 561 -14 6 1424 999 25 0 0 chr3 109973870 109973992 -49625791 + (CA)n Simple_repeat Simple_repeat 2 123 0 6 1424 705 93 23 0 chr3 109974017 109974146 -49625637 + (TAGA)n Simple_repeat Simple_repeat 2 133 0 6 1424 723 105 0 39 chr3 109976074 109976203 -49623580 + L1Md_F2 LINE L1 6459 6582 0 6 1424 1986 47 0 8 chr3 109976232 109976475 -49623308 + L1Md_T LINE L1 5344 5586 -297 6 1424 8483 34 0 0 chr3 109976475 109977471 -49622312 + L1Md_T LINE L1 5587 6582 0 6 1424 3644 63 101 0 chr3 109977471 109977995 -49621788 + Lx3_Mus LINE L1 6433 7009 0 6 1424 495 33 0 0 chr3 109978101 109978162 -49621621 + (CA)n Simple_repeat Simple_repeat 2 62 0 6 1424 207 0 0 0 chr3 109978162 109978185 -49621598 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 6 1424 300 304 65 0 chr3 109978188 109978280 -49621503 - MER5A DNA MER1_type -63 126 29 6 1424 311 341 12 0 chr3 109978338 109978420 -49621363 - LTR16A LTR ERVL -367 84 2 6 1424 186 71 0 0 chr3 109978476 109978504 -49621279 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 6 1424 21 36 0 0 chr3 109979507 109979535 -49620248 + AT_rich Low_complexity Low_complexity 1 28 0 6 1424 750 53 0 0 chr3 109979570 109979665 -49620118 + (TTTC)n Simple_repeat Simple_repeat 4 98 0 6 1424 3696 154 51 197 chr3 109980613 109981654 -49618129 + RMER19B LTR ERVK 1 889 -13 6 1424 429 383 22 16 chr3 109981713 109981896 -49617887 + MLT2F LTR ERVL 416 599 -64 6 1424 831 321 108 32 chr3 109982396 109983345 -49616438 + ERVL-E-int LTR ERVL 29 1020 -4647 6 1424 308 330 114 11 chr3 109983594 109983778 -49616005 + ERVL-E-int LTR ERVL 3064 3266 -2448 6 1424 868 295 110 11 chr3 109983851 109984207 -49615576 - Lx8 LINE L1 -17 7456 7066 6 1424 1124 78 0 0 chr3 109984238 109984380 -49615403 + B1_Mm SINE Alu 1 142 -5 6 1424 755 58 0 19 chr3 109984400 109984432 -49615351 + (GAA)n Simple_repeat Simple_repeat 2 33 0 6 1424 1237 78 0 11 chr3 109984432 109984613 -49615170 + (GGGAGA)n Simple_repeat Simple_repeat 2 180 0 6 1424 755 58 0 19 chr3 109984613 109984686 -49615097 + (GAA)n Simple_repeat Simple_repeat 1 72 0 6 1424 286 358 25 49 chr3 109984715 109984918 -49614865 + ERVL-E-int LTR ERVL 3376 3573 -2184 6 1424 577 250 14 0 chr3 109985077 109985217 -49614566 - Lx9 LINE L1 -169 7475 7334 6 1424 706 366 51 32 chr3 109985312 109986000 -49613783 + ERVL-E-int LTR ERVL 3625 4325 -1342 6 1424 759 118 7 19 chr3 109986145 109986300 -49613483 + (TCTA)n Simple_repeat Simple_repeat 2 154 0 6 1424 23 0 0 0 chr3 109986379 109986402 -49613381 + AT_rich Low_complexity Low_complexity 1 23 0 6 1424 836 255 137 8 chr3 109986977 109987218 -49612565 - B4 SINE B4 -18 274 3 6 1424 589 253 169 17 chr3 109988429 109988606 -49611177 - B3 SINE B2 -7 209 6 6 1424 530 316 87 22 chr3 109989344 109989574 -49610209 + MIR SINE MIR 18 262 0 6 1424 1248 304 31 14 chr3 109989957 109990307 -49609476 + MTEa LTR MaLR 4 359 -20 6 1424 478 318 68 81 chr3 109990923 109991117 -49608666 + ORR1D2 LTR MaLR 1 187 -183 6 1424 2458 52 16 0 chr3 109991117 109991423 -49608360 - L1Md_F2 LINE L1 -12 6570 6260 6 1424 478 319 78 64 chr3 109991423 109991599 -49608184 + ORR1D2 LTR MaLR 188 379 0 6 1424 378 0 0 0 chr3 109991961 109992003 -49607780 + (TTCA)n Simple_repeat Simple_repeat 3 44 0 6 1424 909 265 141 0 chr3 109992111 109992399 -49607384 + MTE2b LTR MaLR 18 341 -38 6 1424 2960 49 18 0 chr3 109992999 109993386 -49606397 - L1_Mus2 LINE L1 -43 6523 6130 6 1424 311 23 0 44 chr3 109993427 109993472 -49606311 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 6 1424 21 0 0 0 chr3 109993983 109994004 -49605779 + AT_rich Low_complexity Low_complexity 1 21 0 6 1424 21 36 0 0 chr3 109994423 109994451 -49605332 + AT_rich Low_complexity Low_complexity 1 28 0 6 1424 255 384 0 0 chr3 109995130 109995216 -49604567 - B4 SINE B4 -2 290 205 6 1424 198 0 0 0 chr3 109995233 109995255 -49604528 + (TCTCTG)n Simple_repeat Simple_repeat 2 23 0 6 1424 491 138 11 0 chr3 109995257 109995344 -49604439 + (TG)n Simple_repeat Simple_repeat 2 89 0 6 1424 21 0 0 0 chr3 109995353 109995374 -49604409 + AT_rich Low_complexity Low_complexity 1 21 0 6 1424 306 292 151 23 chr3 109995670 109995842 -49603941 - Lx8 LINE L1 -2 7471 7278 6 1424 1510 227 35 24 chr3 109995895 109996265 -49603518 + ORR1D1 LTR MaLR 1 374 0 6 1424 284 57 0 0 chr3 109997415 109997450 -49602333 + U2 snRNA snRNA 1 35 -153 6 1424 258 293 13 13 chr3 109997585 109997661 -49602122 + CT-rich Low_complexity Low_complexity 4 79 0 6 1424 211 240 189 23 chr3 109997712 109997844 -49601939 + L2 LINE L2 2342 2495 -924 6 1424 217 95 23 23 chr3 109998001 109998044 -49601739 + (TTTG)n Simple_repeat Simple_repeat 3 45 0 6 1424 369 354 93 23 chr3 109998049 109998263 -49601520 - Lx8 LINE L1 -144 7329 7101 6 1424 198 0 0 0 chr3 109998318 109998340 -49601443 + (TA)n Simple_repeat Simple_repeat 2 23 0 6 1424 768 261 46 39 chr3 109998340 109998599 -49601184 - Lx8 LINE L1 -470 7003 6743 6 1424 213 39 0 0 chr3 109998721 109998747 -49601036 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 6 1424 417 39 0 0 chr3 109998835 109998886 -49600897 + (TCTA)n Simple_repeat Simple_repeat 1 51 0 6 1424 6630 111 17 7 chr3 109998888 109999897 -49599886 - Lx3A LINE L1 -16 6965 5947 6 1424 355 269 124 28 chr3 110000035 110000180 -49599603 + MIR SINE MIR 47 200 -62 1 1424 203 220 0 20 chr3 110001990 110002041 -49597742 + (TTA)n Simple_repeat Simple_repeat 1 50 0 2 1424 299 395 70 9 chr3 110002086 110002201 -49597582 + B3A SINE B2 51 172 -26 3 1424 214 309 0 0 chr3 110002321 110002376 -49597407 + (TA)n Simple_repeat Simple_repeat 2 56 0 4 1424 13274 84 30 72 chr3 110002617 110003656 -49596127 + L1VL2 LINE L1 153 1130 -2485 5 1424 3053 76 0 5 chr3 110003656 110004054 -49595729 + MTA_Mm LTR MaLR 1 396 0 6 1424 13274 88 6 17 chr3 110004054 110005912 -49593871 + L1VL2 LINE L1 1131 2983 -632 5 1424 483 290 67 12 chr3 110006143 110006307 -49593476 + Lx8 LINE L1 6475 6647 -826 7 1424 1325 299 28 40 chr3 110006335 110006878 -49592905 + Lx8 LINE L1 6923 7458 -15 7 1424 991 278 64 26 chr3 110007192 110007458 -49592325 + B4 SINE B4 9 284 -8 8 1424 819 349 49 45 chr3 110008196 110008688 -49591095 - MLT1D LTR MaLR -9 645 3 9 1424 189 0 0 0 chr3 110009061 110009082 -49590701 + (TAA)n Simple_repeat Simple_repeat 2 22 0 1 1424 413 324 14 14 chr3 110010759 110010903 -49588880 + MER20 DNA MER1_type 39 182 -37 1 1424 305 262 145 11 chr3 110010912 110011008 -49588775 + B1F2 SINE Alu 1 104 -13 1 1424 417 39 0 0 chr3 110011084 110011135 -49588648 + (TC)n Simple_repeat Simple_repeat 1 51 0 1 1424 2638 109 2 21 chr3 110011214 110011645 -49588138 - Lx3A LINE L1 -528 6453 6031 1 1424 3404 124 29 19 chr3 110011649 110012143 -49587640 + Lx3A LINE L1 6458 6966 -15 1 1424 396 0 0 0 chr3 110012143 110012187 -49587596 + (TAAA)n Simple_repeat Simple_repeat 1 44 0 1 1424 3404 124 29 19 chr3 110012187 110012211 -49587572 + Lx3A LINE L1 6967 6981 0 1 1424 36965 4 0 0 chr3 110012235 110017606 -49582177 + L1Md_A LINE L1 215 5586 -297 1 1424 9043 3 0 0 chr3 110017606 110018602 -49581181 + L1Md_A LINE L1 5587 6582 0 1 1424 874 294 50 30 chr3 110019217 110019467 -49580316 + MLT1A1 LTR MaLR 1 258 -150 1 1424 2024 168 27 3 chr3 110019467 110019837 -49579946 + RLTR30 LTR ERV1 1 379 0 1 1424 874 294 50 30 chr3 110019837 110019884 -49579899 + MLT1A1 LTR MaLR 259 304 -104 1 1424 278 326 30 23 chr3 110019926 110020058 -49579725 + L1M4c LINE L1 241 373 -6011 1 1424 234 279 138 75 chr3 110020131 110020800 -49578983 + L1M4c LINE L1 3134 3844 -2532 1 1424 2068 162 5 24 chr3 110020902 110021276 -49578507 + ORR1B2 LTR MaLR 1 367 0 2 1424 1826 215 80 10 chr3 110021675 110022089 -49577694 + MT2A LTR ERVL 71 513 -20 2 1424 1149 75 0 0 chr3 110022110 110022256 -49577527 - B1_Mm SINE Alu 0 147 2 2 1424 528 267 22 15 chr3 110022327 110022464 -49577319 - MTD LTR MaLR 0 419 282 2 1424 3050 68 17 17 chr3 110022464 110022871 -49576912 - MTB_Mm LTR MaLR 0 407 1 2 1424 406 314 49 84 chr3 110022924 110023083 -49576700 - MTD LTR MaLR -149 270 120 2 1424 447 19 0 0 chr3 110023083 110023135 -49576648 + (CA)n Simple_repeat Simple_repeat 2 53 0 2 1424 406 314 49 84 chr3 110023135 110023201 -49576582 - MTD LTR MaLR -300 119 55 2 1424 5318 102 38 13 chr3 110023205 110024543 -49575240 + L1_Mus2 LINE L1 5176 6564 -2 2 1424 1255 205 75 10 chr3 110024617 110024922 -49574861 - Lx2B LINE L1 -23 6977 6653 2 1424 23 0 0 0 chr3 110024978 110025001 -49574782 + AT_rich Low_complexity Low_complexity 1 23 0 2 1424 539 245 13 64 chr3 110025031 110025188 -49574595 - B1_Mur1 SINE Alu 0 149 1 2 1424 2488 237 162 9 chr3 110025352 110026190 -49573593 - Lx6 LINE L1 -26 7434 6264 3 1424 5119 178 15 30 chr3 110026245 110027396 -49572387 + L1_Mur2 LINE L1 1601 2734 -3143 3 1424 559 294 13 88 chr3 110027491 110027730 -49572053 - Lx8 LINE L1 -131 7342 7122 3 1424 240 159 28 28 chr3 110028296 110028367 -49571416 + A-rich Low_complexity Low_complexity 5 75 0 3 1424 336 355 53 0 chr3 110028464 110028616 -49571167 - MER102a DNA MER1_type -108 222 63 3 1424 824 284 54 71 chr3 110028890 110029186 -49570597 + B4 SINE B4 2 292 0 3 1424 310 331 50 29 chr3 110029589 110029729 -49570054 - MLT1H LTR MaLR -276 273 131 3 1424 1150 165 18 22 chr3 110030108 110030331 -49569452 - Lx2 LINE L1 0 6997 6776 3 1424 1506 167 38 7 chr3 110030335 110030624 -49569159 - Lx2 LINE L1 -474 6523 6226 3 1424 304 263 19 153 chr3 110031635 110031717 -49568066 - B4A SINE B4 0 292 226 3 1424 1841 141 3 10 chr3 110031717 110032018 -49567765 - Lx2 LINE L1 -3 6994 6696 3 1424 361 236 102 62 chr3 110032018 110032196 -49567587 - B4A SINE B4 -67 225 2 3 1424 191 295 36 71 chr3 110032315 110032399 -49567384 - MIRm SINE MIR -2 274 194 4 1424 2465 167 72 55 chr3 110032427 110032952 -49566831 - RMER5 LTR ERV1 0 534 1 4 1424 263 28 28 0 chr3 110034276 110034312 -49565471 + (CA)n Simple_repeat Simple_repeat 2 38 0 4 1424 525 16 0 0 chr3 110034312 110034373 -49565410 + (GA)n Simple_repeat Simple_repeat 2 63 0 4 1424 351 0 0 0 chr3 110034563 110034602 -49565181 + (TG)n Simple_repeat Simple_repeat 1 39 0 4 1424 2868 73 39 3 chr3 110034604 110034990 -49564793 + MTB LTR MaLR 1 400 0 4 1424 594 317 57 38 chr3 110035050 110035260 -49564523 + B3A SINE B2 3 216 0 4 1424 228 309 188 96 chr3 110035822 110036030 -49563753 - B4 SINE B4 -63 229 3 4 1424 573 285 109 27 chr3 110036064 110036248 -49563535 - B3 SINE B2 0 216 18 4 1424 576 246 14 7 chr3 110036265 110036408 -49563375 - B1_Mur3 SINE Alu -5 144 1 4 1424 207 0 0 0 chr3 110036420 110036443 -49563340 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 5 1424 228 207 10 146 chr3 110036905 110037001 -49562782 + MER50B LTR ERV1 150 232 -465 5 1424 212 333 0 31 chr3 110037385 110037450 -49562333 + PB1D10 SINE Alu 33 95 -22 5 1424 361 244 77 0 chr3 110037668 110037746 -49562037 - B1_Mur1 SINE Alu -7 142 59 5 1424 283 290 75 22 chr3 110037812 110037946 -49561837 + MIR SINE MIR 122 262 0 5 1424 210 273 45 0 chr3 110038682 110038748 -49561035 + GA-rich Low_complexity Low_complexity 1 69 0 5 1424 26 0 0 0 chr3 110039159 110039185 -49560598 + AT_rich Low_complexity Low_complexity 1 26 0 5 1424 201 167 0 0 chr3 110039464 110039500 -49560283 + A-rich Low_complexity Low_complexity 1 36 0 5 1424 266 292 25 124 chr3 110039524 110039645 -49560138 - PB1D10 SINE Alu -1 116 8 5 1424 684 249 16 22 chr3 110039800 110039995 -49559788 - B3 SINE B2 -3 192 2 5 1424 236 267 26 26 chr3 110040191 110040268 -49559515 + MTEb LTR MaLR 272 348 -31 6 1424 1770 124 6 54 chr3 110040591 110040905 -49558878 + Lx4A LINE L1 6760 7058 0 6 1424 23 0 0 0 chr3 110041781 110041804 -49557979 + AT_rich Low_complexity Low_complexity 1 23 0 6 1424 22 0 0 0 chr3 110041923 110041945 -49557838 + AT_rich Low_complexity Low_complexity 1 22 0 6 1424 505 232 58 58 chr3 110041964 110042152 -49557631 + Lx9 LINE L1 6910 7097 -547 6 1424 270 213 16 16 chr3 110042267 110042329 -49557454 - Lx8 LINE L1 -243 7230 7169 6 1424 1416 223 41 8 chr3 110042668 110043030 -49556753 - ORR1D1 LTR MaLR 0 374 1 6 1424 914 265 60 57 chr3 110043184 110043520 -49556263 + ORR1C2 LTR MaLR 1 337 -47 6 1424 2874 125 2 5 chr3 110043521 110043970 -49555813 + Lx4B LINE L1 6189 6636 -422 6 1424 437 192 10 10 chr3 110043973 110044073 -49555710 + Lx4B LINE L1 6955 7054 -4 6 1424 273 57 0 0 chr3 110044075 110044110 -49555673 + (TAAA)n Simple_repeat Simple_repeat 3 37 0 6 1424 350 109 0 18 chr3 110044120 110044176 -49555607 + ORR1C2 LTR MaLR 338 392 -2 6 1424 22 35 0 0 chr3 110044457 110044486 -49555297 + AT_rich Low_complexity Low_complexity 1 29 0 7 1424 3220 63 2 0 chr3 110044567 110044966 -49554817 - MTB LTR MaLR 0 400 1 7 1424 525 183 37 28 chr3 110045020 110045117 -49554666 + B1_Mur1 SINE Alu 42 140 -9 7 1424 213 39 0 0 chr3 110045117 110045143 -49554640 + (CCAA)n Simple_repeat Simple_repeat 2 27 0 7 1424 541 274 80 120 chr3 110045561 110045733 -49554050 + B4A SINE B4 6 165 -127 7 1424 3295 59 0 19 chr3 110045733 110046148 -49553635 + MTB_Mm LTR MaLR 1 407 0 7 1424 541 274 80 120 chr3 110046148 110046274 -49553509 + B4A SINE B4 166 292 0 7 1424 21 36 0 0 chr3 110046354 110046382 -49553401 + AT_rich Low_complexity Low_complexity 1 28 0 7 1424 22 70 0 0 chr3 110047104 110047147 -49552636 + AT_rich Low_complexity Low_complexity 1 43 0 7 1424 513 254 82 0 chr3 110048261 110048371 -49551412 - B3 SINE B2 -95 121 3 7 1424 466 336 0 14 chr3 110050092 110050234 -49549549 + ID_B1 SINE B4 84 223 -1 7 1424 21 0 0 0 chr3 110052025 110052046 -49547737 + AT_rich Low_complexity Low_complexity 1 21 0 8 1424 2324 124 181 71 chr3 110054129 110054505 -49545278 - MT2B2 LTR ERVL -7 577 122 8 1424 1105 76 0 20 chr3 110054505 110054653 -49545130 + B1_Mus2 SINE Alu 2 146 -1 8 1424 2324 124 181 71 chr3 110054653 110054796 -49544987 - MT2B2 LTR ERVL -463 121 1 8 1424 709 319 5 16 chr3 110055515 110055703 -49544080 + B3 SINE B2 20 205 -11 8 1424 422 295 60 7 chr3 110055919 110056069 -49543714 + MER5B DNA MER1_type 5 162 -16 8 1424 180 0 0 0 chr3 110056356 110056376 -49543407 + (TTAA)n Simple_repeat Simple_repeat 1 20 0 8 1424 407 292 42 0 chr3 110056388 110056532 -49543251 - RSINE1 SINE B4 -14 151 2 8 1424 339 243 0 0 chr3 110056851 110056987 -49542796 + (CATCC)n Simple_repeat Simple_repeat 3 138 0 8 1424 283 170 0 36 chr3 110057128 110057183 -49542600 + ORR1A1 LTR MaLR 294 346 0 8 1424 8939 150 64 33 chr3 110057183 110057695 -49542088 + ORR1A1-int LTR MaLR 1 517 -1446 8 1424 204 40 0 0 chr3 110057695 110057720 -49542063 + (TTAAA)n Simple_repeat Simple_repeat 5 29 0 8 1424 8939 150 64 33 chr3 110057720 110058925 -49540858 + ORR1A1-int LTR MaLR 518 1772 -191 8 1424 663 124 0 0 chr3 110059403 110059516 -49540267 + (TCC)n Simple_repeat Simple_repeat 3 115 0 9 1424 1121 129 60 111 chr3 110059952 110060204 -49539579 + MT2A LTR ERVL 1 239 -294 9 1424 438 309 157 42 chr3 110061750 110062063 -49537720 - MLT1E1A LTR MaLR -190 490 156 9 1424 701 206 33 12 chr3 110062160 110062358 -49537425 - RLTR25B LTR ERVK 0 1103 872 9 1424 34811 81 2 7 chr3 110062358 110068506 -49531277 - L1Md_F2 LINE L1 -1 6581 466 9 1424 254 206 17 157 chr3 110068510 110068625 -49531158 - RLTR25A LTR ERVK -173 930 832 9 1424 221 196 26 13 chr3 110068655 110068810 -49530973 + (TCTA)n Simple_repeat Simple_repeat 2 158 0 9 1424 2615 167 44 94 chr3 110069030 110069914 -49529869 - RLTR25B LTR ERVK -149 954 141 9 1424 937 183 148 26 chr3 110070351 110070615 -49529168 + RLTR25B LTR ERVK 733 1028 0 9 1424 979 259 67 18 chr3 110071677 110072019 -49527764 - ORR1E LTR MaLR 0 359 1 9 1424 569 298 64 19 chr3 110072293 110072568 -49527215 + MER47B DNA MER2_type 74 418 0 1 1424 1322 307 36 20 chr3 110072568 110073026 -49526757 - MLT2B3 LTR ERVL -36 479 14 1 1424 662 256 206 25 chr3 110073042 110073219 -49526564 - ERVL-int LTR ERVL -445 5312 5123 1 1424 293 68 0 22 chr3 110073219 110073264 -49526519 + (TTA)n Simple_repeat Simple_repeat 2 45 0 1 1424 5305 163 25 2 chr3 110073264 110074151 -49525632 - Lx4A LINE L1 -10 7048 6142 1 1424 662 256 206 25 chr3 110074151 110074292 -49525491 - ERVL-int LTR ERVL -635 5122 4936 1 1424 189 0 0 0 chr3 110074292 110074313 -49525470 + (T)n Simple_repeat Simple_repeat 1 21 0 1 1424 529 280 10 37 chr3 110074332 110074515 -49525268 + MTE2a LTR MaLR 44 193 -186 1 1424 2305 142 50 0 chr3 110075981 110076383 -49523400 + BGLII_Mus LTR ERVK 1 422 0 1 1424 199 297 80 56 chr3 110076884 110077009 -49522774 - L2c LINE L2 0 3387 3260 1 1424 480 18 0 0 chr3 110077160 110077217 -49522566 + (CA)n Simple_repeat Simple_repeat 2 58 0 1 1424 350 325 36 48 chr3 110077743 110077911 -49521872 - HAL1 LINE L1 -2247 260 95 1 1424 231 315 80 51 chr3 110079098 110079235 -49520548 + MLT1A0 LTR MaLR 11 151 -214 1 1424 288 0 0 0 chr3 110079235 110079267 -49520516 + (TG)n Simple_repeat Simple_repeat 1 32 0 1 1424 590 0 14 0 chr3 110079267 110079336 -49520447 + (GA)n Simple_repeat Simple_repeat 1 71 0 1 1424 22 35 0 0 chr3 110081039 110081068 -49518715 + AT_rich Low_complexity Low_complexity 1 29 0 1 1424 285 0 43 22 chr3 110081192 110081238 -49518545 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 1 1424 992 101 0 7 chr3 110081238 110081377 -49518406 - B1_Mus1 SINE Alu -10 138 1 1 1424 340 338 76 0 chr3 110081402 110081547 -49518236 + MLT1A0 LTR MaLR 1 156 -209 1 1424 238 299 80 19 chr3 110081737 110082060 -49517723 + L1_Mur3 LINE L1 1314 1658 -4225 1 1424 892 263 0 5 chr3 110082102 110082297 -49517486 + B3 SINE B2 1 194 -22 1 1424 1091 248 110 19 chr3 110082336 110082644 -49517139 - MTD LTR MaLR 0 419 84 1 1424 2172 252 48 11 chr3 110082649 110083314 -49516469 + L1_Mur3 LINE L1 4294 4983 -897 1 1424 623 278 7 3 chr3 110083442 110083608 -49516175 - MTC LTR MaLR -27 380 218 1 1424 231 158 0 0 chr3 110083606 110083644 -49516139 + MTD LTR MaLR 167 204 -217 1 1424 814 267 94 4 chr3 110083650 110083883 -49515900 + MTD LTR MaLR 166 419 0 1 1424 3080 318 95 35 chr3 110083884 110085528 -49514255 + Lx8 LINE L1 5729 7471 -2 1 1424 1163 137 5 0 chr3 110086200 110086397 -49513386 + L1_Mur1 LINE L1 3886 4083 -1803 1 1424 1412 139 63 0 chr3 110086384 110086636 -49513147 - L1_Mur2 LINE L1 -1548 4329 4062 1 1424 7966 147 54 3 chr3 110086656 110086869 -49512914 + Lx2B LINE L1 5587 5797 -1203 1 1424 858 128 90 0 chr3 110086869 110087002 -49512781 + B1_Mm SINE Alu 2 146 -1 1 1424 7966 147 54 3 chr3 110087002 110088120 -49511663 + Lx2B LINE L1 5798 6984 -16 1 1424 249 93 92 13 chr3 110088191 110088267 -49511516 + (TCTA)n Simple_repeat Simple_repeat 3 84 0 1 1424 28 61 0 0 chr3 110088293 110088342 -49511441 + AT_rich Low_complexity Low_complexity 1 49 0 1 1424 201 359 65 19 chr3 110089623 110089731 -49510052 - MIRm SINE MIR -124 152 40 1 1424 401 254 74 17 chr3 110090485 110090661 -49509122 - Lx7 LINE L1 0 7696 7511 1 1424 2200 89 0 0 chr3 110090681 110090974 -49508809 - L1_Mus2 LINE L1 -320 6246 5954 1 1424 1974 51 43 4 chr3 110090973 110091230 -49508553 + L1_Mus2 LINE L1 6247 6513 -53 1 1424 920 75 7 0 chr3 110091230 110091370 -49508413 + B1_Mus1 SINE Alu 5 148 0 1 1424 333 272 45 117 chr3 110091248 110091402 -49508381 + B4A SINE B4 111 253 -39 1 1424 2844 235 71 28 chr3 110091426 110092639 -49507144 - Lx7 LINE L1 -238 7458 6152 1 1424 278 308 66 0 chr3 110092925 110093016 -49506767 - MIR SINE MIR -42 220 124 1 1424 231 88 0 0 chr3 110093345 110093379 -49506404 + (ATGGTG)n Simple_repeat Simple_repeat 1 34 0 1 1424 233 209 14 69 chr3 110093755 110093827 -49505956 + Charlie10 DNA MER1_type 1421 1488 -1334 1 1424 956 263 28 12 chr3 110094133 110094383 -49505400 - Lx6 LINE L1 -27 7433 7180 1 1424 22796 22 0 0 chr3 110094425 110097110 -49502673 + L1Md_T LINE L1 2902 5586 -297 1 1424 8967 6 0 0 chr3 110097110 110098106 -49501677 + L1Md_T LINE L1 5587 6582 0 1 1424 949 312 113 12 chr3 110098559 110099207 -49500576 - L1MA6 LINE L1 0 6300 5588 1 1424 1366 246 99 3 chr3 110099211 110099554 -49500229 + MTE2b LTR MaLR 4 379 0 1 1424 622 297 48 8 chr3 110099555 110099806 -49499977 - L1MA6 LINE L1 -710 5590 5330 1 1424 259 96 39 0 chr3 110099890 110099942 -49499841 + (CA)n Simple_repeat Simple_repeat 2 55 0 1 1425 235 282 140 68 chr3 110100652 110100945 -49498838 - HAL1 LINE L1 -1543 964 651 1 1425 209 227 0 0 chr3 110102298 110102342 -49497441 + T-rich Low_complexity Low_complexity 1 44 0 1 1425 418 274 26 0 chr3 110102959 110103076 -49496707 + B1F SINE Alu 29 148 -1 1 1425 333 0 0 0 chr3 110103102 110103139 -49496644 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 1 1425 1103 272 91 21 chr3 110103167 110103498 -49496285 - ORR1E LTR MaLR 0 359 6 1 1425 492 346 63 10 chr3 110103549 110103756 -49496027 - MER20 DNA MER1_type 0 219 2 1 1425 186 43 0 0 chr3 110103762 110103785 -49495998 + (TG)n Simple_repeat Simple_repeat 2 24 0 1 1425 466 324 0 29 chr3 110104706 110104846 -49494937 + ID_B1 SINE B4 77 212 -12 1 1425 2137 176 53 8 chr3 110104846 110105241 -49494542 - MTC LTR MaLR -8 413 1 1 1425 253 64 64 0 chr3 110106059 110106106 -49493677 + (CAAAA)n Simple_repeat Simple_repeat 5 54 0 1 1425 1287 316 58 17 chr3 110106712 110107191 -49492592 + MLT2B2 LTR ERVL 4 502 -13 1 1425 502 327 53 5 chr3 110107369 110107578 -49492205 + ID_B1 SINE B4 1 219 -5 1 1425 1558 254 92 32 chr3 110108749 110109279 -49490504 - RLTR18 LTR ERVK -104 512 31 1 1425 470 96 14 0 chr3 110109412 110109485 -49490298 + (CA)n Simple_repeat Simple_repeat 2 75 0 1 1425 726 291 32 38 chr3 110109493 110109833 -49489950 - L1MA4 LINE L1 -364 5936 5599 1 1425 621 289 14 0 chr3 110109837 110109979 -49489804 - B1_Mur1 SINE Alu -5 144 1 1 1425 239 245 148 30 chr3 110109983 110110084 -49489699 - L1MA4 LINE L1 -696 5604 5492 1 1425 25 0 0 0 chr3 110110299 110110324 -49489459 + AT_rich Low_complexity Low_complexity 1 25 0 1 1425 27 62 0 0 chr3 110110407 110110455 -49489328 + AT_rich Low_complexity Low_complexity 1 48 0 1 1425 277 252 188 0 chr3 110111818 110111985 -49487798 - L1M2 LINE L1 -433 5870 5676 1 1425 483 266 61 39 chr3 110112021 110112252 -49487531 - L1MC LINE L1 -1455 4691 4456 1 1425 235 200 0 48 chr3 110112548 110112590 -49487193 + B4A SINE B4 232 271 -21 1 1425 456 19 0 0 chr3 110112600 110112653 -49487130 + (CA)n Simple_repeat Simple_repeat 2 54 0 1 1425 276 317 0 38 chr3 110113177 110113282 -49486501 + PB1D10 SINE Alu 17 117 0 1 1425 198 0 0 0 chr3 110113682 110113704 -49486079 + (TC)n Simple_repeat Simple_repeat 1 22 0 1 1425 261 0 0 0 chr3 110113704 110113732 -49486051 + (CA)n Simple_repeat Simple_repeat 1 29 0 1 1425 279 0 0 0 chr3 110113732 110113763 -49486020 + (TG)n Simple_repeat Simple_repeat 1 31 0 1 1425 2212 119 0 58 chr3 110113840 110114187 -49485596 - ORR1A2 LTR MaLR 0 327 1 1 1425 401 342 29 75 chr3 110114221 110114395 -49485388 - B4A SINE B4 -126 166 1 1 1425 1009 329 55 34 chr3 110114576 110114991 -49484792 + MER70B LTR ERVL 2 425 -153 1 1425 294 202 95 0 chr3 110115169 110115253 -49484530 - L1MC2 LINE L1 -2 6342 6251 1 1425 663 326 126 24 chr3 110115259 110115523 -49484260 - MER73 LTR ERVL 0 644 348 1 1425 2306 158 54 16 chr3 110115523 110115967 -49483816 + RMER6B LTR ERVK 1 461 0 1 1425 663 326 126 24 chr3 110115967 110116035 -49483748 - MER73 LTR ERVL -297 347 278 1 1425 1052 306 55 30 chr3 110116019 110116380 -49483403 - MTE2b LTR MaLR -9 370 1 1 1425 3149 275 89 49 chr3 110116386 110117503 -49482280 - MTE2b-int LTR MaLR -9 1571 410 1 1425 6344 139 27 5 chr3 110117503 110118723 -49481060 - Lx4A LINE L1 -314 6744 5483 1 1425 775 115 15 0 chr3 110118797 110118927 -49480856 + (GAAAA)n Simple_repeat Simple_repeat 2 133 0 1 1425 396 289 15 133 chr3 110119011 110119282 -49480501 - RMER12 LTR ERVK -396 1008 557 1 1425 1457 219 107 37 chr3 110119266 110119845 -49479938 - RMER12 LTR ERVK -596 808 1 1 1425 231 36 0 0 chr3 110120026 110120054 -49479729 + (TG)n Simple_repeat Simple_repeat 1 28 0 1 1425 2171 46 3 21 chr3 110120461 110120751 -49479032 - L1Md_F2 LINE L1 0 6582 6298 1 1425 372 343 0 10 chr3 110120861 110120961 -49478822 + ID_B1 SINE B4 84 182 -42 1 1425 244 200 55 0 chr3 110121069 110121124 -49478659 + MLT2B3 LTR ERVL 7 64 -490 1 1425 279 0 0 0 chr3 110121136 110121167 -49478616 + (A)n Simple_repeat Simple_repeat 1 31 0 1 1425 745 355 16 7 chr3 110121354 110121660 -49478123 + Ricksha_c DNA MuDR 596 904 -1144 1 1425 332 333 32 32 chr3 110121985 110122171 -49477612 - MER5A DNA MER1_type -1 188 3 1 1425 286 167 18 73 chr3 110122355 110122465 -49477318 + A-rich Low_complexity Low_complexity 6 109 0 1 1425 378 0 0 0 chr3 110122619 110122661 -49477122 + (CA)n Simple_repeat Simple_repeat 2 43 0 1 1425 36224 46 1 3 chr3 110122746 110129420 -49470363 - L1Md_T LINE L1 0 6585 1 1 1425 360 0 0 0 chr3 110129440 110129480 -49470303 + (TC)n Simple_repeat Simple_repeat 2 41 0 1 1425 261 0 0 0 chr3 110129480 110129508 -49470275 + (TG)n Simple_repeat Simple_repeat 2 30 0 1 1425 846 326 28 38 chr3 110129515 110129802 -49469981 - B4A SINE B4 -7 285 2 1 1425 410 245 117 83 chr3 110130485 110130611 -49469172 - Charlie18a DNA MER1_type -55 287 160 1 1425 455 0 18 0 chr3 110130611 110130666 -49469117 + (CA)n Simple_repeat Simple_repeat 2 57 0 1 1425 410 245 117 83 chr3 110130666 110130744 -49469039 - Charlie18a DNA MER1_type -183 159 76 1 1425 23 33 0 0 chr3 110132021 110132051 -49467732 + AT_rich Low_complexity Low_complexity 1 30 0 1 1425 296 250 64 55 chr3 110132106 110132216 -49467567 - MIR SINE MIR -86 176 66 1 1425 221 309 29 14 chr3 110132217 110132286 -49467497 - B3 SINE B2 -145 71 2 1 1425 468 368 26 57 chr3 110132675 110132940 -49466843 + AmnSINE1 SINE SINE 251 507 -68 1 1425 23 33 0 0 chr3 110133086 110133116 -49466667 + AT_rich Low_complexity Low_complexity 1 30 0 1 1425 267 312 35 48 chr3 110134044 110134070 -49465713 - MER99 DNA hAT? -299 532 508 1 1425 1429 171 225 6 chr3 110134070 110134412 -49465371 + MTC LTR MaLR 2 418 -3 2 1425 267 312 35 48 chr3 110134412 110134530 -49465253 - MER99 DNA hAT? -324 507 390 1 1425 397 253 99 61 chr3 110134603 110134784 -49464999 + Lx9 LINE L1 7004 7191 -453 2 1425 459 297 92 26 chr3 110135105 110135257 -49464526 - RSINE1 SINE B4 -1 164 3 2 1425 265 346 76 38 chr3 110135346 110135451 -49464332 + PB1D10 SINE Alu 1 109 -8 2 1425 5708 144 45 18 chr3 110135687 110136712 -49463071 - Lx2 LINE L1 -1 6996 5944 2 1425 18062 161 15 3 chr3 110136720 110140213 -49459570 + Lx2A1 LINE L1 2387 5917 -1091 2 1425 323 60 20 0 chr3 110140969 110141019 -49458764 + (CATA)n Simple_repeat Simple_repeat 2 52 0 2 1425 226 178 30 61 chr3 110141231 110141297 -49458486 - MIRb SINE MIR -61 207 144 2 1425 1374 259 49 17 chr3 110141694 110142044 -49457739 + MTEa LTR MaLR 1 361 -18 2 1425 1163 291 55 15 chr3 110142975 110143310 -49456473 - MTE2b LTR MaLR -11 367 26 2 1425 591 15 0 0 chr3 110144564 110144632 -49455151 + (TTTA)n Simple_repeat Simple_repeat 2 69 0 2 1425 1178 51 0 0 chr3 110144632 110144770 -49455013 - B1_Mus1 SINE Alu -10 138 1 2 1425 262 337 22 0 chr3 110144789 110144881 -49454902 - L2a LINE L2 -18 3408 3315 2 1425 385 228 29 10 chr3 110145518 110145635 -49454148 - MLT1A1 LTR MaLR 0 408 247 2 1425 823 256 34 5 chr3 110146665 110146854 -49452929 + B3 SINE B2 1 194 -22 2 1425 423 0 0 0 chr3 110146854 110146901 -49452882 + (TA)n Simple_repeat Simple_repeat 1 47 0 2 1425 823 256 34 5 chr3 110146901 110146915 -49452868 + B3 SINE B2 195 210 -6 2 1425 212 148 0 53 chr3 110147489 110147546 -49452237 + T-rich Low_complexity Low_complexity 1 54 0 2 1425 2935 75 7 16 chr3 110148660 110149109 -49450674 - L1_Mur1 LINE L1 -386 5500 5056 2 1425 916 116 0 79 chr3 110149111 110149289 -49450494 - L1_Mur1 LINE L1 -1692 4194 4031 2 1425 8745 106 18 4 chr3 110149272 110150729 -49449054 + Lx3A LINE L1 5508 6979 -2 2 1425 243 0 0 0 chr3 110150783 110150810 -49448973 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 2 1425 258 105 0 0 chr3 110151066 110151104 -49448679 + (TTA)n Simple_repeat Simple_repeat 2 39 0 2 1425 426 277 28 102 chr3 110151138 110151315 -49448468 - RSINE1 SINE B4 0 165 2 2 1425 235 234 0 147 chr3 110151729 110151804 -49447979 + PB1D7 SINE Alu 2 65 -55 2 1425 621 72 0 0 chr3 110152134 110152217 -49447566 + (GGAA)n Simple_repeat Simple_repeat 2 84 0 2 1425 1068 109 0 0 chr3 110153782 110153929 -49445854 - B1_Mus1 SINE Alu 0 148 2 2 1425 12477 60 6 7 chr3 110153956 110156305 -49443478 - L1Md_F2 LINE L1 -23 6559 4215 2 1425 2926 46 0 3 chr3 110156305 110156696 -49443087 + L1Md_F2 LINE L1 3853 4242 -1641 2 1425 233 120 19 74 chr3 110157730 110157784 -49441999 + (CAA)n Simple_repeat Simple_repeat 3 53 0 2 1425 275 229 18 37 chr3 110157890 110157999 -49441784 + L1MA5 LINE L1 6168 6274 -26 2 1425 3736 48 2 0 chr3 110158633 110159091 -49440692 + L1Md_F2 LINE L1 6123 6581 -1 2 1425 255 296 25 0 chr3 110159172 110159253 -49440530 + CT-rich Low_complexity Low_complexity 3 85 0 2 1425 1326 252 25 31 chr3 110160727 110161087 -49438696 + MTE2b LTR MaLR 1 358 -21 2 1425 201 39 0 0 chr3 110164879 110164905 -49434878 + (A)n Simple_repeat Simple_repeat 1 26 0 2 1425 2735 131 260 29 chr3 110165121 110165733 -49434050 + RMER6A LTR ERVK 4 756 0 2 1425 930 282 11 10 chr3 110165735 110165971 -49433812 - ID_B1 SINE B4 -44 248 10 2 1425 242 344 80 51 chr3 110165978 110166116 -49433667 + MIR SINE MIR 119 260 -2 2 1425 533 222 0 137 chr3 110167395 110167541 -49432242 + URR1B DNA MER1_type 1 126 -99 2 1425 299 323 212 3 chr3 110168213 110168393 -49431390 - MIRb SINE MIR -20 248 28 2 1425 378 0 0 0 chr3 110168635 110168677 -49431106 + (CA)n Simple_repeat Simple_repeat 1 42 0 2 1425 308 287 95 7 chr3 110170606 110170743 -49429040 + MIRm SINE MIR 19 167 -109 2 1425 18004 76 13 3 chr3 110171033 110174156 -49425627 - L1Md_F2 LINE L1 0 6582 3428 2 1425 1196 22 0 0 chr3 110174154 110174293 -49425490 + L1Md_T LINE L1 5781 5919 -663 2 1425 5802 86 3 5 chr3 110174290 110175144 -49424639 - L1Md_F2 LINE L1 -3550 2333 1481 2 1425 4843 140 77 1 chr3 110175141 110175947 -49423836 - L1Md_F2 LINE L1 -5642 974 108 2 1425 3956 131 69 9 chr3 110175975 110176640 -49423143 - Lx LINE L1 0 6654 5950 2 1425 279 257 73 45 chr3 110178245 110178355 -49421428 + MIR SINE MIR 40 152 -110 2 1425 474 272 198 59 chr3 110179015 110179443 -49420340 - RLTR11B LTR ERVK -19 509 3 2 1425 745 243 39 6 chr3 110179445 110179623 -49420160 - Lx6 LINE L1 -84 7376 7193 2 1425 3466 18 0 8 chr3 110179742 110180141 -49419642 - MTA_Mm LTR MaLR 0 396 1 2 1425 1317 144 14 5 chr3 110180576 110180793 -49418990 - URR1A DNA MER1_type 0 226 8 2 1425 2022 186 54 17 chr3 110181105 110181511 -49418272 - MTC LTR MaLR 0 421 1 2 1425 320 111 0 18 chr3 110182884 110182939 -49416844 + (CAT)n Simple_repeat Simple_repeat 1 54 0 2 1425 189 0 0 0 chr3 110183427 110183448 -49416335 + (CAAAAA)n Simple_repeat Simple_repeat 3 23 0 2 1425 183 318 34 45 chr3 110183843 110183932 -49415851 + MIRb SINE MIR 104 191 -77 2 1425 1135 238 72 11 chr3 110184369 110184717 -49415066 + ORR1D1 LTR MaLR 2 370 -4 2 1425 2968 83 5 0 chr3 110184896 110185294 -49414489 - MTB LTR MaLR 0 400 1 2 1425 377 355 13 7 chr3 110185348 110185501 -49414282 - MIR SINE MIR -27 235 82 2 1425 405 0 0 0 chr3 110186415 110186460 -49413323 + (CA)n Simple_repeat Simple_repeat 2 46 0 2 1425 2926 240 54 0 chr3 110186538 110187191 -49412592 + Lx6 LINE L1 6748 7435 -25 2 1425 238 352 66 0 chr3 110187252 110187343 -49412440 + PB1D10 SINE Alu 21 117 0 2 1425 194 328 90 0 chr3 110187761 110187828 -49411955 + MIR SINE MIR 1 73 -189 2 1425 290 393 66 9 chr3 110188065 110188291 -49411492 + MT2A LTR ERVL 222 460 -73 2 1425 370 0 0 39 chr3 110188322 110188374 -49411409 + (CAAAA)n Simple_repeat Simple_repeat 2 51 0 2 1425 373 249 125 49 chr3 110188603 110188795 -49410988 + MTEb LTR MaLR 156 371 -8 2 1425 490 242 82 92 chr3 110189760 110189956 -49409827 - RMER30 DNA MER1_type -1 201 8 2 1425 546 268 36 0 chr3 110190187 110190325 -49409458 - ID_B1 SINE B4 -26 198 56 2 1425 629 195 69 23 chr3 110190328 110190416 -49409367 + Lx9 LINE L1 7379 7467 -177 2 1425 423 68 0 0 chr3 110190416 110190475 -49409308 + (TCTCTG)n Simple_repeat Simple_repeat 2 60 0 2 1425 629 195 69 23 chr3 110190475 110190559 -49409224 + Lx9 LINE L1 7468 7559 -85 2 1425 395 272 57 82 chr3 110191646 110191926 -49407857 - L1M5 LINE L1 -696 5428 5146 2 1425 367 323 37 30 chr3 110192274 110192408 -49407375 - ID_B1 SINE B4 -4 220 86 2 1425 208 349 36 0 chr3 110193569 110193652 -49406131 - L2c LINE L2 -43 3344 3259 2 1425 471 18 0 0 chr3 110193829 110193885 -49405898 + (CA)n Simple_repeat Simple_repeat 2 57 0 2 1425 236 322 11 11 chr3 110194483 110194577 -49405206 + GA-rich Low_complexity Low_complexity 2 95 0 2 1425 2408 52 6 6 chr3 110194645 110194957 -49404826 - L1Md_F3 LINE L1 -14 6570 6259 2 1425 231 244 0 0 chr3 110195889 110195967 -49403816 + GA-rich Low_complexity Low_complexity 2 79 0 2 1425 3093 125 4 8 chr3 110198709 110199193 -49400590 + Lx LINE L1 5313 5794 -89 2 1425 792 71 0 0 chr3 110199193 110199292 -49400491 - L1_Mm LINE L1 -269 5614 5516 2 1425 5575 35 1 0 chr3 110199274 110199979 -49399804 + L1Md_F2 LINE L1 5526 6235 -347 2 1425 25 0 0 0 chr3 110199994 110200019 -49399764 + AT_rich Low_complexity Low_complexity 1 25 0 2 1425 21 0 0 0 chr3 110200037 110200058 -49399725 + AT_rich Low_complexity Low_complexity 1 21 0 2 1425 2820 78 3 10 chr3 110200064 110200451 -49399332 - L1Md_F2 LINE L1 -17 6565 6182 2 1425 5087 119 34 4 chr3 110200449 110201243 -49398540 + Lx LINE L1 5824 6641 -13 2 1425 379 266 56 8 chr3 110201277 110201402 -49398381 + MER97c DNA MER1_type? 556 686 -404 2 1425 270 367 49 23 chr3 110201408 110201673 -49398110 + B4A SINE B4 3 274 -18 2 1425 201 175 25 0 chr3 110202750 110202790 -49396993 + (CAAA)n Simple_repeat Simple_repeat 3 43 0 2 1425 1683 289 45 34 chr3 110202809 110203425 -49396358 + Lx8 LINE L1 6207 6829 -644 2 1425 592 351 36 4 chr3 110203468 110203717 -49396066 + Lx8 LINE L1 6909 7165 -308 2 1425 555 16 0 0 chr3 110204097 110204161 -49395622 + (CA)n Simple_repeat Simple_repeat 1 64 0 2 1425 213 108 0 0 chr3 110204351 110204388 -49395395 + (T)n Simple_repeat Simple_repeat 1 37 0 2 1425 772 118 8 0 chr3 110204461 110204580 -49395203 - URR1B DNA MER1_type 0 225 106 2 1425 1027 227 62 124 chr3 110204815 110204893 -49394890 + MTE2a LTR MaLR 2 59 -320 2 1425 666 205 175 21 chr3 110204893 110205087 -49394696 - URR1B DNA MER1_type 0 225 2 2 1425 1027 227 62 124 chr3 110205087 110205411 -49394372 + MTE2a LTR MaLR 60 379 0 2 1425 26 64 0 0 chr3 110205465 110205512 -49394271 + AT_rich Low_complexity Low_complexity 1 47 0 2 1425 203 330 131 47 chr3 110206417 110206608 -49393175 - L3b LINE CR1 -130 352 146 2 1425 288 0 0 0 chr3 110207160 110207192 -49392591 + (TC)n Simple_repeat Simple_repeat 1 32 0 2 1425 6926 134 19 45 chr3 110207193 110208398 -49391385 - Lx2 LINE L1 0 6997 5824 2 1425 693 271 80 0 chr3 110208472 110208671 -49391112 + MTD LTR MaLR 200 414 -5 2 1425 25 51 0 0 chr3 110208709 110208748 -49391035 + AT_rich Low_complexity Low_complexity 1 39 0 2 1425 808 19 19 0 chr3 110209348 110209454 -49390329 + (TCTA)n Simple_repeat Simple_repeat 3 110 0 2 1425 467 319 56 11 chr3 110209736 110210002 -49389781 + L1M5 LINE L1 5526 5803 -361 2 1425 716 165 39 0 chr3 110210306 110210433 -49389350 + B3 SINE B2 1 132 -84 2 1425 3314 54 0 0 chr3 110211661 110212067 -49387716 + L1Md_F3 LINE L1 5829 6234 -350 2 1425 207 0 0 0 chr3 110212091 110212114 -49387669 + (TA)n Simple_repeat Simple_repeat 1 23 0 2 1425 191 36 36 0 chr3 110212140 110212168 -49387615 + (TTA)n Simple_repeat Simple_repeat 1 29 0 2 1425 904 64 8 0 chr3 110212168 110212293 -49387490 - L1Md_F2 LINE L1 -23 6559 6434 2 1425 482 196 5 27 chr3 110212508 110212692 -49387091 + GA-rich Low_complexity Low_complexity 1 180 0 3 1425 459 0 0 0 chr3 110214019 110214070 -49385713 + (CA)n Simple_repeat Simple_repeat 2 52 0 3 1425 1044 59 0 29 chr3 110214136 110214275 -49385508 - L1_Mus4 LINE L1 -449 6187 6053 3 1425 204 240 0 0 chr3 110214907 110214957 -49384826 + T-rich Low_complexity Low_complexity 1 50 0 3 1425 183 309 44 26 chr3 110215940 110216053 -49383730 - MIR SINE MIR -22 240 126 3 1425 204 40 0 0 chr3 110217146 110217171 -49382612 + (TTTTC)n Simple_repeat Simple_repeat 2 26 0 3 1425 348 64 0 0 chr3 110217177 110217224 -49382559 + (TG)n Simple_repeat Simple_repeat 1 47 0 3 1425 2018 111 3 62 chr3 110217836 110218174 -49381609 + ORR1A3 LTR MaLR 1 318 -8 3 1425 252 291 25 149 chr3 110218287 110218408 -49381375 + MamGypLTR1d LTR Gypsy 62 167 -646 3 1425 33129 27 1 4 chr3 110218564 110223771 -49376012 + L1Md_T LINE L1 414 5586 -297 3 1425 8319 40 0 0 chr3 110223771 110224767 -49375016 + L1Md_T LINE L1 5587 6582 0 3 1425 186 133 0 0 chr3 110225603 110225633 -49374150 + (CA)n Simple_repeat Simple_repeat 1 30 0 3 1425 23 54 0 0 chr3 110225686 110225723 -49374060 + AT_rich Low_complexity Low_complexity 1 37 0 3 1425 615 123 0 0 chr3 110225757 110225879 -49373904 + (T)n Simple_repeat Simple_repeat 1 122 0 3 1425 1101 102 0 0 chr3 110225879 110226026 -49373757 - B1_Mus2 SINE Alu 0 147 1 3 1425 309 305 70 7 chr3 110226242 110226384 -49373399 + HAL1b LINE L1 1825 1975 -34 3 1425 1040 97 7 0 chr3 110226883 110227038 -49372745 + (TTC)n Simple_repeat Simple_repeat 2 157 0 3 1425 1046 75 15 0 chr3 110227039 110227172 -49372611 - B1_Mus2 SINE Alu -12 135 1 3 1425 2412 184 30 83 chr3 110227569 110228160 -49371623 + RLTR20B2 LTR ERVK 1 560 0 3 1425 639 181 94 0 chr3 110228301 110228428 -49371355 + ORR1B2 LTR MaLR 1 139 -228 3 1425 22 0 0 30 chr3 110228600 110228621 -49371162 + AT_rich Low_complexity Low_complexity 1 21 0 3 1425 6227 98 20 2 chr3 110228621 110229528 -49370255 + Lx3_Mus LINE L1 6079 7001 -8 3 1425 22 0 0 30 chr3 110229528 110229539 -49370244 + AT_rich Low_complexity Low_complexity 1 11 0 3 1425 6209 79 3 15 chr3 110229586 110230522 -49369261 - L1_Mm LINE L1 -3125 2758 1834 3 1425 4346 92 1 1 chr3 110230525 110231511 -49368272 + L1_Mm LINE L1 854 1839 -4044 3 1426 284 341 45 30 chr3 110231883 110232016 -49367767 - Tigger5 DNA MER2_type -2172 234 100 3 1426 3983 197 34 58 chr3 110232109 110232943 -49366840 - RMER19B LTR ERVK -85 817 4 3 1426 196 338 155 25 chr3 110233086 110233247 -49366536 - MIRc SINE MIR -21 247 66 3 1426 345 47 0 0 chr3 110233498 110233541 -49366242 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 1426 391 308 158 0 chr3 110233547 110233667 -49366116 - B3A SINE B2 -50 148 10 3 1426 469 274 51 15 chr3 110234252 110234389 -49365394 - MER5B DNA MER1_type -31 147 6 3 1426 206 32 32 0 chr3 110234955 110234986 -49364797 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 3 1426 3717 250 28 57 chr3 110235335 110237326 -49362457 + Lx5 LINE L1 5130 7050 0 3 1426 211 175 35 0 chr3 110237349 110237406 -49362377 + GA-rich Low_complexity Low_complexity 2 60 0 3 1426 747 0 0 0 chr3 110238584 110238667 -49361116 + (TTTC)n Simple_repeat Simple_repeat 3 85 0 3 1426 340 314 52 24 chr3 110239427 110239815 -49359968 + L1_Mur3 LINE L1 5170 5603 -694 3 1426 1597 173 3 69 chr3 110239899 110240097 -49359686 + Lx3B LINE L1 5955 6141 -832 3 1426 2353 123 12 61 chr3 110240097 110240505 -49359278 + Lx2 LINE L1 6609 6996 -1 3 1426 1597 173 3 69 chr3 110240505 110240684 -49359099 + Lx3B LINE L1 6142 6307 -666 3 1426 377 157 11 22 chr3 110240683 110240774 -49359009 + Lx3B LINE L1 6817 6906 -70 3 1426 653 149 26 0 chr3 110240789 110240903 -49358880 + RLTR25B LTR ERVK 656 772 -256 3 1426 251 208 110 61 chr3 110241098 110241180 -49358603 + RLTR25B LTR ERVK 740 825 -203 3 1426 204 286 0 0 chr3 110241181 110241223 -49358560 + (CACG)n Simple_repeat Simple_repeat 2 43 0 3 1426 355 69 17 33 chr3 110241223 110241283 -49358500 + HAL1-3A_ME LINE L1 1976 2034 -824 3 1426 440 188 220 8 chr3 110241286 110241404 -49358379 + RLTR25B LTR ERVK 961 1103 0 3 1426 524 309 98 34 chr3 110241977 110242479 -49357304 - L1MB4 LINE L1 -320 6096 5563 3 1426 1034 305 66 53 chr3 110242775 110243817 -49355966 - L1MB4 LINE L1 -1185 5191 4136 3 1426 451 291 73 77 chr3 110243941 110244448 -49355335 - L1MB4 LINE L1 -4944 1440 936 3 1426 610 200 49 28 chr3 110244448 110244592 -49355191 - B1_Mm SINE Alu 0 147 1 3 1426 279 0 0 0 chr3 110244616 110244647 -49355136 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 3 1426 282 329 49 0 chr3 110244845 110244988 -49354795 - L1MB4 LINE L1 -6217 167 18 3 1426 230 310 77 8 chr3 110245287 110245417 -49354366 + L1MD LINE L1 5037 5175 -971 3 1426 4212 173 27 30 chr3 110245587 110245698 -49354085 + L1Md_F2 LINE L1 398 520 -6204 3 1426 1418 53 0 11 chr3 110245698 110245887 -49353896 - L1Md_F2 LINE L1 -12 6570 6384 3 1426 29909 89 14 11 chr3 110245887 110250952 -49348831 + L1Md_F2 LINE L1 521 5585 -298 3 1426 7183 74 33 4 chr3 110250953 110251918 -49347865 + L1Md_F2 LINE L1 5587 6579 -3 3 1426 1193 176 8 4 chr3 110252007 110252253 -49347530 - Lx3_Mus LINE L1 -627 6382 6136 3 1426 1686 143 62 16 chr3 110252253 110252559 -49347224 + Lx3_Mus LINE L1 6687 7006 -3 3 1426 2010 191 22 29 chr3 110252566 110252976 -49346807 + RLTR28 LTR ERVL 3 409 -115 3 1426 533 224 17 25 chr3 110252972 110253091 -49346692 + ORR1B2 LTR MaLR 33 150 -217 3 1426 395 91 0 0 chr3 110253059 110253114 -49346669 + ORR1B2 LTR MaLR 273 327 -51 3 1426 180 176 0 0 chr3 110253114 110253148 -49346635 + A-rich Low_complexity Low_complexity 1 34 0 3 1426 1168 274 59 105 chr3 110253207 110253615 -49346168 + Lx6 LINE L1 6851 7264 -196 3 1426 216 0 0 0 chr3 110253615 110253639 -49346144 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 3 1426 1168 274 59 105 chr3 110253639 110253841 -49345942 + Lx6 LINE L1 7265 7433 -27 3 1426 216 295 16 32 chr3 110256950 110257013 -49342770 + B1_Mus1 SINE Alu 15 76 -72 3 1426 263 345 89 31 chr3 110258451 110258708 -49341075 - Lx8 LINE L1 -28 7445 7174 3 1426 829 322 65 3 chr3 110258825 110259195 -49340588 - Lx8 LINE L1 -451 7022 6630 3 1426 773 11 0 0 chr3 110259194 110259288 -49340495 + L1_Mm LINE L1 3406 3499 -2384 3 1426 5041 40 0 0 chr3 110259289 110259885 -49339898 + L1Md_T LINE L1 5987 6582 0 3 1426 1063 328 27 29 chr3 110260093 110260582 -49339201 - Lx8 LINE L1 -898 6575 6088 3 1426 563 255 22 52 chr3 110260604 110260836 -49338947 + Lx8 LINE L1 5734 5958 -1515 3 1426 498 17 0 0 chr3 110261309 110261368 -49338415 + (CA)n Simple_repeat Simple_repeat 1 59 0 3 1426 779 252 52 13 chr3 110261451 110261680 -49338103 + RLTR22_Mur LTR ERVK 1 238 -1610 3 1426 280 196 41 52 chr3 110261701 110261798 -49337985 - Lx2B LINE L1 0 7000 6905 3 1426 4236 214 147 30 chr3 110261798 110262816 -49336967 + RLTR22_Mus LTR ERVK 246 1382 -426 3 1426 582 54 0 0 chr3 110262816 110262890 -49336893 + (TA)n Simple_repeat Simple_repeat 2 75 0 3 1426 4236 214 147 30 chr3 110262890 110263193 -49336590 + RLTR22_Mus LTR ERVK 1383 1722 -86 3 1426 3122 66 2 2 chr3 110263759 110264155 -49335628 + MTA_Mm LTR MaLR 1 396 0 3 1426 7780 78 11 4 chr3 110264155 110265245 -49334538 + MTA_Mm-int LTR MaLR 1 1098 0 3 1426 3320 35 5 2 chr3 110265245 110265640 -49334143 + MTA_Mm LTR MaLR 1 396 0 3 1426 4607 211 8 17 chr3 110265702 110266619 -49333164 + Lx5 LINE L1 6143 7050 0 3 1426 6906 77 6 23 chr3 110267154 110268348 -49331435 + L1_Mus2 LINE L1 5392 6565 -1 3 1426 686 259 47 6 chr3 110268396 110268567 -49331216 - B3A SINE B2 -6 192 15 3 1426 288 0 0 0 chr3 110268567 110268599 -49331184 + (TA)n Simple_repeat Simple_repeat 2 33 0 3 1426 2044 96 0 0 chr3 110269289 110269592 -49330191 - L1_Mm LINE L1 -1551 4332 4030 3 1426 2347 84 0 3 chr3 110269592 110270125 -49329658 + L1_Mus1 LINE L1 6251 6567 0 3 1426 344 323 59 18 chr3 110270777 110270947 -49328836 + MIR SINE MIR 58 234 -28 3 1426 25 51 0 0 chr3 110271341 110271380 -49328403 + AT_rich Low_complexity Low_complexity 1 39 0 3 1426 1094 261 38 10 chr3 110271539 110271984 -49327799 - Lx4B LINE L1 -2 6998 6535 3 1426 9001 186 27 52 chr3 110271976 110273434 -49326349 - L1VL4 LINE L1 -2359 3518 2064 3 1426 702 35 0 0 chr3 110273434 110273519 -49326264 + (TC)n Simple_repeat Simple_repeat 2 86 0 3 1426 9001 186 27 52 chr3 110273519 110274145 -49325638 - L1VL4 LINE L1 -3814 2063 1493 3 1426 1106 94 0 0 chr3 110274145 110274283 -49325500 - B1_Mus2 SINE Alu -8 139 2 3 1426 9001 186 27 52 chr3 110274283 110274527 -49325256 - L1VL4 LINE L1 -4385 1492 1263 3 1426 180 0 0 0 chr3 110274527 110274547 -49325236 + (TTG)n Simple_repeat Simple_repeat 2 21 0 3 1426 9001 204 98 11 chr3 110274547 110274953 -49324830 - L1VL4 LINE L1 -4615 1262 803 3 1426 30 69 0 0 chr3 110275281 110275339 -49324444 + AT_rich Low_complexity Low_complexity 1 58 0 3 1426 877 191 137 0 chr3 110275978 110276161 -49323622 - MTC LTR MaLR -8 413 206 3 1426 1849 234 42 133 chr3 110276182 110276980 -49322803 - RMER1B Other Other -5 1025 348 3 1426 1002 202 65 15 chr3 110276980 110277181 -49322602 - MTC LTR MaLR -210 211 1 3 1426 2446 323 70 40 chr3 110277366 110278626 -49321157 - RMER15-int LTR ERVL -3320 1679 382 3 1426 331 318 87 0 chr3 110279284 110279410 -49320373 - RMER15 LTR ERVL -16 559 423 3 1426 455 403 55 29 chr3 110279662 110279974 -49319809 - MLT1F2 LTR MaLR -240 320 1 3 1426 309 431 78 3 chr3 110280145 110280503 -49319280 + L2 LINE L2 2659 3043 -376 3 1426 25 51 0 0 chr3 110280570 110280609 -49319174 + AT_rich Low_complexity Low_complexity 1 39 0 3 1426 368 277 114 8 chr3 110280673 110280804 -49318979 + MLT1C LTR MaLR 38 182 -285 3 1426 212 330 43 43 chr3 110280809 110280926 -49318857 + PB1D7 SINE Alu 3 119 -1 3 1426 542 327 18 6 chr3 110280958 110281124 -49318659 + MLT1C LTR MaLR 168 335 -132 3 1426 185 261 0 0 chr3 110281324 110281370 -49318413 + L2a LINE L2 3377 3422 -4 3 1426 521 231 133 60 chr3 110281486 110281771 -49318012 - Lx9 LINE L1 0 7644 7339 3 1426 1317 73 0 0 chr3 110281808 110281986 -49317797 + (TCTCCC)n Simple_repeat Simple_repeat 3 180 0 3 1426 432 0 0 0 chr3 110281986 110282034 -49317749 + (TC)n Simple_repeat Simple_repeat 1 48 0 3 1426 283 366 32 8 chr3 110282034 110282158 -49317625 - RSINE1 SINE B4 -34 131 5 3 1426 3560 125 9 92 chr3 110282313 110282954 -49316829 - MT2B LTR ERVL -8 593 6 3 1426 229 283 61 78 chr3 110283140 110283255 -49316528 - ORR1E LTR MaLR -246 113 1 3 1426 247 307 119 78 chr3 110283580 110283873 -49315910 + Charlie6 DNA MER1_type 1576 1880 -1620 3 1426 1012 213 68 44 chr3 110284655 110284805 -49314978 - Lx9 LINE L1 0 7644 7480 3 1426 324 0 0 0 chr3 110284805 110284841 -49314942 + (TA)n Simple_repeat Simple_repeat 1 36 0 3 1426 1012 213 68 44 chr3 110284841 110285029 -49314754 - Lx9 LINE L1 -165 7479 7298 3 1426 621 330 31 16 chr3 110285334 110285654 -49314129 - L1MC1 LINE L1 -6 6327 6003 3 1426 15372 188 23 54 chr3 110285653 110287317 -49312466 + L1_Mur1 LINE L1 1887 3579 -2307 3 1426 1293 152 17 4 chr3 110287317 110287548 -49312235 + Lx LINE L1 6414 6647 -7 3 1426 15372 188 23 54 chr3 110287548 110289430 -49310353 + L1_Mur1 LINE L1 3580 5323 -563 3 1426 309 0 0 0 chr3 110289430 110289466 -49310317 - Lx3_Mus LINE L1 -690 6319 6284 3 1426 297 156 17 27 chr3 110289441 110289514 -49310269 + L1MC5 LINE L1 6701 6816 -1179 3 1426 226 281 149 44 chr3 110290059 110290129 -49309654 + L1MC5 LINE L1 7637 7706 -289 3 1426 1095 36 0 0 chr3 110290129 110290269 -49309514 + (GA)n Simple_repeat Simple_repeat 1 140 0 4 1426 226 281 149 44 chr3 110290269 110290447 -49309336 + L1MC5 LINE L1 7707 7911 -84 3 1426 1081 259 101 6 chr3 110291093 110291438 -49308345 + MTE2b LTR MaLR 2 379 0 4 1426 366 156 0 0 chr3 110291442 110291506 -49308277 + (CAT)n Simple_repeat Simple_repeat 3 66 0 4 1426 850 238 34 5 chr3 110292625 110292832 -49306951 - RMER15 LTR ERVL 0 575 363 4 1426 261 0 0 0 chr3 110292832 110292861 -49306922 + (T)n Simple_repeat Simple_repeat 1 29 0 4 1426 8388 6 0 1 chr3 110292881 110293818 -49305965 - L1Md_T LINE L1 0 6582 5647 4 1426 8667 20 0 0 chr3 110293816 110294820 -49304963 + L1Md_T LINE L1 4640 5643 -240 4 1426 1180 259 50 41 chr3 110294820 110295159 -49304624 - RMER15 LTR ERVL -201 374 33 4 1426 247 312 38 0 chr3 110295323 110295403 -49304380 - MLT1A LTR MaLR -277 97 15 4 1426 507 329 0 0 chr3 110296069 110296230 -49303553 + (TG)n Simple_repeat Simple_repeat 2 162 0 4 1426 270 220 50 17 chr3 110297038 110297098 -49302685 + ORR1C2 LTR MaLR 1 62 -312 4 1426 224 209 0 23 chr3 110297098 110297142 -49302641 + C-rich Low_complexity Low_complexity 1 43 0 4 1426 1047 197 5 28 chr3 110297143 110297357 -49302426 + ORR1C2 LTR MaLR 174 382 -2 4 1426 230 250 115 0 chr3 110297823 110297875 -49301908 + B4 SINE B4 92 149 -143 4 1426 3904 72 6 35 chr3 110297904 110298447 -49301336 - L1_Mus2 LINE L1 -2 6564 6038 4 1426 3113 54 3 0 chr3 110298447 110298837 -49300946 + L1_Mus2 LINE L1 5628 6018 -548 4 1426 347 349 11 51 chr3 110298837 110299015 -49300768 + B4 SINE B4 122 292 0 4 1426 3032 171 28 16 chr3 110299185 110299767 -49300016 - Lx4B LINE L1 -7 7051 6463 4 1426 2833 175 82 21 chr3 110299768 110300350 -49299433 + Lx4B LINE L1 5846 6463 -595 4 1426 398 234 0 0 chr3 110300696 110300773 -49299010 + B3 SINE B2 1 77 -139 4 1426 4352 112 12 21 chr3 110300997 110301662 -49298121 - Lx3_Mus LINE L1 0 7009 6351 4 1426 745 75 0 0 chr3 110301662 110301756 -49298027 + Lx3_Mus LINE L1 6274 6367 -642 4 1426 232 397 0 0 chr3 110302659 110302737 -49297046 + B3 SINE B2 3 80 -136 4 1426 222 340 27 9 chr3 110302737 110302769 -49297014 + B4 SINE B4 3 114 -178 4 1426 23 0 0 0 chr3 110302872 110302895 -49296888 + AT_rich Low_complexity Low_complexity 1 23 0 4 1426 1616 304 108 20 chr3 110303041 110303931 -49295852 - Lx8 LINE L1 -1 7472 6505 4 1426 595 360 50 11 chr3 110303944 110304301 -49295482 - Lx8 LINE L1 -1034 6439 6069 4 1426 506 67 13 0 chr3 110304774 110304849 -49294934 + (TCTA)n Simple_repeat Simple_repeat 3 78 0 4 1426 317 317 24 0 chr3 110305088 110305170 -49294613 + ORR1E LTR MaLR 3 86 -273 4 1426 2222 209 101 47 chr3 110305153 110305729 -49294054 - ORR1D1-int LTR MaLR -763 607 1 4 1426 393 211 35 80 chr3 110305729 110305842 -49293941 - ORR1D1 LTR MaLR 0 374 267 4 1426 384 255 27 36 chr3 110305881 110305991 -49293792 - ORR1D1 LTR MaLR -265 109 1 4 1426 360 0 0 0 chr3 110306105 110306145 -49293638 + (TG)n Simple_repeat Simple_repeat 2 41 0 4 1426 427 330 42 51 chr3 110306152 110306369 -49293414 - B4A SINE B4 -12 280 66 4 1426 27 62 0 0 chr3 110306427 110306475 -49293308 + AT_rich Low_complexity Low_complexity 1 48 0 4 1426 23 0 0 0 chr3 110306595 110306618 -49293165 + AT_rich Low_complexity Low_complexity 1 23 0 4 1426 2438 137 15 45 chr3 110306625 110307092 -49292691 + RLTR11B LTR ERVK 1 453 0 4 1426 312 311 64 57 chr3 110307628 110307785 -49291998 - MER5B DNA MER1_type -3 175 18 4 1426 215 233 0 23 chr3 110307799 110307843 -49291940 + L3 LINE CR1 4444 4486 -3 4 1426 236 299 20 10 chr3 110308142 110308213 -49291570 + (TCTCTG)n Simple_repeat Simple_repeat 4 76 0 4 1426 375 121 0 0 chr3 110308213 110308271 -49291512 + (CA)n Simple_repeat Simple_repeat 2 59 0 4 1426 236 299 20 10 chr3 110308271 110308297 -49291486 + (TCTCTG)n Simple_repeat Simple_repeat 2 27 0 4 1426 240 231 103 0 chr3 110308468 110308546 -49291237 + MIR SINE MIR 107 192 -70 4 1426 32 43 0 0 chr3 110308996 110309042 -49290741 + AT_rich Low_complexity Low_complexity 1 46 0 4 1426 257 200 10 82 chr3 110309122 110309220 -49290563 + A-rich Low_complexity Low_complexity 5 95 0 4 1426 686 332 65 28 chr3 110309243 110309599 -49290184 - Lx7 LINE L1 -388 7308 6940 4 1426 5292 90 13 4 chr3 110310317 110311065 -49288718 + L1_Mus3 LINE L1 5884 6638 0 4 1426 342 304 43 43 chr3 110311413 110311530 -49288253 - RSINE1 SINE B4 -40 125 9 4 1426 1405 238 35 6 chr3 110311746 110312059 -49287724 - MTE2a LTR MaLR 0 379 58 4 1426 209 260 0 0 chr3 110312398 110312448 -49287335 - MIR SINE MIR -42 220 171 4 1426 282 29 0 0 chr3 110312561 110312596 -49287187 + (TG)n Simple_repeat Simple_repeat 1 35 0 4 1426 798 11 0 0 chr3 110312596 110312686 -49287097 + (GA)n Simple_repeat Simple_repeat 1 91 0 4 1426 411 73 0 0 chr3 110312799 110312854 -49286929 + (CAA)n Simple_repeat Simple_repeat 2 56 0 4 1426 261 254 184 66 chr3 110313419 110313571 -49286212 + L3 LINE CR1 4207 4376 -113 4 1426 33 0 0 0 chr3 110313877 110313910 -49285873 + AT_rich Low_complexity Low_complexity 1 33 0 4 1426 21 36 0 0 chr3 110314698 110314726 -49285057 + AT_rich Low_complexity Low_complexity 1 28 0 4 1426 421 284 50 0 chr3 110316062 110316203 -49283580 - L1MC1 LINE L1 -6 6327 6180 4 1426 369 298 33 25 chr3 110316289 110316533 -49283250 - L1MC1 LINE L1 -381 5963 5718 4 1426 4183 79 13 23 chr3 110316546 110317144 -49282639 - Lx3_Mus LINE L1 0 7009 6418 4 1426 2962 73 17 48 chr3 110317144 110317625 -49282158 + Lx3_Mus LINE L1 5507 5969 -1040 4 1426 710 322 20 28 chr3 110317634 110318030 -49281753 - L1MC1 LINE L1 -622 5711 5319 4 1426 252 265 37 47 chr3 110318083 110318190 -49281593 - L1MC1 LINE L1 -957 5189 5084 4 1426 273 355 58 97 chr3 110318195 110318473 -49281310 + B4 SINE B4 8 274 -18 4 1426 504 0 0 0 chr3 110318510 110318566 -49281217 + (TC)n Simple_repeat Simple_repeat 1 56 0 4 1426 28 0 0 0 chr3 110318586 110318614 -49281169 + AT_rich Low_complexity Low_complexity 1 28 0 4 1426 330 301 83 14 chr3 110318759 110319010 -49280773 - L1MC1 LINE L1 -1186 4960 4690 4 1426 22 0 0 0 chr3 110319490 110319512 -49280271 + AT_rich Low_complexity Low_complexity 1 22 0 4 1426 654 302 101 83 chr3 110319768 110321081 -49278702 + L1_Mur3 LINE L1 2317 3652 -2228 4 1426 1370 268 82 19 chr3 110321322 110322008 -49277775 + L1M2 LINE L1 4690 5423 -1021 4 1426 1612 211 47 33 chr3 110322285 110322647 -49277136 - ORR1B2 LTR MaLR 0 367 1 4 1426 551 0 43 0 chr3 110322661 110322730 -49277053 + (CATAT)n Simple_repeat Simple_repeat 4 75 0 4 1426 6265 190 83 38 chr3 110322736 110324156 -49275627 - ORR1B2-int LTR MaLR -25 1484 1 4 1426 557 224 116 37 chr3 110324160 110324350 -49275433 - ORR1B2 LTR MaLR -8 386 182 4 1426 295 138 62 0 chr3 110324392 110324457 -49275326 + Lx9 LINE L1 7575 7643 -1 4 1426 351 0 0 0 chr3 110324703 110324742 -49275041 + (CA)n Simple_repeat Simple_repeat 2 40 0 4 1426 4709 88 145 0 chr3 110325151 110325847 -49273936 + L1_Mus3 LINE L1 5837 6633 -5 4 1426 189 359 50 79 chr3 110326356 110326495 -49273288 + MIR SINE MIR 33 167 -95 4 1426 306 0 0 0 chr3 110326499 110326533 -49273250 + (TC)n Simple_repeat Simple_repeat 1 34 0 4 1426 207 0 0 0 chr3 110326533 110326555 -49273228 + (CA)n Simple_repeat Simple_repeat 1 23 0 4 1426 333 0 0 0 chr3 110326555 110326592 -49273191 + (TG)n Simple_repeat Simple_repeat 2 38 0 4 1426 262 321 17 87 chr3 110326983 110327168 -49272615 + MLT2C2 LTR ERVL 392 551 -12 4 1426 422 309 184 13 chr3 110327493 110327726 -49272057 + MLT1D LTR MaLR 88 360 -145 4 1426 2821 30 9 3 chr3 110328354 110328690 -49271093 + L1Md_F2 LINE L1 6224 6561 -21 4 1426 938 60 8 0 chr3 110328690 110328824 -49270959 + (TAGA)n Simple_repeat Simple_repeat 4 138 0 4 1426 308 262 250 23 chr3 110328830 110329002 -49270781 + RMER15 LTR ERVL 352 562 -13 4 1426 446 285 140 15 chr3 110329075 110329620 -49270163 - L1M3 LINE L1 -702 5610 4985 4 1426 325 259 92 32 chr3 110329695 110329895 -49269888 + L1M4 LINE L1 1036 1371 -5369 4 1426 225 336 91 0 chr3 110330126 110330236 -49269547 + PB1D9 SINE Alu 1 120 0 4 1426 5141 44 3 2 chr3 110330586 110331224 -49268559 + L1Md_F3 LINE L1 5944 6582 -2 4 1426 4957 41 0 0 chr3 110331263 110331973 -49267810 - L1Md_F2 LINE L1 -597 5985 5276 4 1426 4543 54 5 0 chr3 110331973 110332546 -49267237 + L1Md_F2 LINE L1 6006 6581 -1 4 1426 409 300 136 42 chr3 110333135 110333445 -49266338 + L1M4 LINE L1 4245 4560 -2084 4 1426 369 314 36 75 chr3 110333992 110334381 -49265402 + L1M4 LINE L1 4636 5009 -1635 4 1426 260 314 31 12 chr3 110334390 110334558 -49265225 + L1M5 LINE L1 3482 3646 -2494 4 1426 318 265 24 0 chr3 110334761 110334844 -49264939 - RSINE1 SINE B4 -78 87 3 4 1426 317 43 43 0 chr3 110335642 110335688 -49264095 + (CAAA)n Simple_repeat Simple_repeat 2 49 0 4 1426 4737 35 0 3 chr3 110335752 110336319 -49263464 - L1Md_F2 LINE L1 0 6582 6018 4 1426 513 0 0 0 chr3 110336916 110336973 -49262810 + (CA)n Simple_repeat Simple_repeat 2 58 0 4 1426 1389 139 17 4 chr3 110337454 110337693 -49262090 + Lx2 LINE L1 6756 6997 0 4 1426 24 32 0 0 chr3 110338222 110338253 -49261530 + AT_rich Low_complexity Low_complexity 1 31 0 4 1426 280 0 50 0 chr3 110338559 110338599 -49261184 + (CAAAA)n Simple_repeat Simple_repeat 4 45 0 4 1426 1013 102 7 52 chr3 110338599 110338754 -49261029 + B1_Mus1 SINE Alu 1 148 0 4 1426 219 36 0 0 chr3 110339468 110339496 -49260287 + (TG)n Simple_repeat Simple_repeat 1 28 0 4 1426 33 25 0 0 chr3 110339782 110339822 -49259961 + AT_rich Low_complexity Low_complexity 1 40 0 4 1426 1600 118 0 8 chr3 110339823 110340070 -49259713 - Lx3A LINE L1 -3 6978 6734 4 1426 1072 45 0 53 chr3 110340768 110340957 -49258826 + (CA)n Simple_repeat Simple_repeat 2 180 0 4 1426 542 180 78 44 chr3 110341672 110341852 -49257931 - Lx9 LINE L1 -1 7643 7458 4 1426 1283 228 82 45 chr3 110342596 110342746 -49257037 - Lx7 LINE L1 0 7696 7543 4 1426 2590 120 22 7 chr3 110342746 110343157 -49256626 + Lx2 LINE L1 6579 6995 -2 4 1426 1283 228 82 45 chr3 110343157 110343321 -49256462 - Lx7 LINE L1 -154 7542 7385 4 1426 414 0 0 0 chr3 110343321 110343367 -49256416 + (TATG)n Simple_repeat Simple_repeat 2 47 0 4 1426 1283 228 82 45 chr3 110343367 110343478 -49256305 - Lx7 LINE L1 -312 7384 7254 4 1426 3380 179 62 1 chr3 110343764 110344413 -49255370 - Lx4A LINE L1 -425 6633 5946 4 1426 453 330 22 22 chr3 110344428 110344611 -49255172 - B3A SINE B2 -15 183 1 4 1426 804 280 8 13 chr3 110345358 110345594 -49254189 + MIR SINE MIR 38 262 0 4 1426 444 19 0 0 chr3 110348725 110348778 -49251005 + (TG)n Simple_repeat Simple_repeat 1 53 0 4 1426 796 288 14 60 chr3 110348780 110349064 -49250719 - B4 SINE B4 -18 274 4 4 1426 513 0 0 0 chr3 110349881 110349938 -49249845 + (CA)n Simple_repeat Simple_repeat 2 58 0 4 1426 585 0 0 0 chr3 110349938 110350002 -49249781 + (GA)n Simple_repeat Simple_repeat 2 66 0 4 1426 185 372 53 0 chr3 110350509 110350603 -49249180 + MIR SINE MIR 34 132 -130 4 1426 1207 55 12 0 chr3 110350852 110351016 -49248767 + (TTTTC)n Simple_repeat Simple_repeat 3 168 0 4 1426 2816 114 11 7 chr3 110351017 110351496 -49248287 - L1_Mus3 LINE L1 0 6638 6189 5 1426 190 336 133 9 chr3 110351514 110351619 -49248164 + MER5A DNA MER1_type 35 152 -37 5 1426 963 325 92 25 chr3 110352927 110353492 -49246291 - Lx9 LINE L1 -359 7285 6683 5 1426 220 214 0 0 chr3 110353788 110353830 -49245953 + (TTG)n Simple_repeat Simple_repeat 1 42 0 5 1426 186 118 0 0 chr3 110354800 110354834 -49244949 + (T)n Simple_repeat Simple_repeat 1 34 0 5 1426 207 100 0 0 chr3 110355362 110355392 -49244391 + (CAAG)n Simple_repeat Simple_repeat 1 30 0 5 1426 608 269 42 12 chr3 110355548 110355767 -49244016 + MTEa LTR MaLR 134 376 -3 5 1426 964 121 0 40 chr3 110355918 110356091 -49243692 - L1Md_F2 LINE L1 -7 6575 6410 5 1426 372 338 15 0 chr3 110356324 110356460 -49243323 + MLT1A0 LTR MaLR 220 357 -8 5 1426 226 294 0 0 chr3 110356552 110356603 -49243180 + B1F SINE Alu 97 147 -2 5 1426 765 45 21 76 chr3 110357649 110357793 -49241990 + L1_Mus3 LINE L1 6498 6633 -5 5 1426 1042 249 87 22 chr3 110358050 110358325 -49241458 - MTD LTR MaLR 0 419 127 5 1426 40 37 0 0 chr3 110358908 110358962 -49240821 + AT_rich Low_complexity Low_complexity 1 54 0 5 1426 231 349 78 16 chr3 110359734 110359862 -49239921 + LTR33B LTR ERVL 90 225 -278 5 1426 710 110 0 0 chr3 110360116 110360225 -49239558 + B2_Mm2 SINE B2 1 109 -86 5 1426 509 354 31 0 chr3 110361529 110361690 -49238093 - B3 SINE B2 -10 206 41 5 1426 1134 75 0 0 chr3 110361891 110362038 -49237745 - B1_Mm SINE Alu 0 147 1 5 178 691 125 100 0 chr3 110362529 110362649 -49237134 + B2_Mm2 SINE B2 1 132 -63 5 1427 235 146 18 18 chr3 110363835 110363891 -49235892 + GA-rich Low_complexity Low_complexity 3 58 0 5 1427 874 335 43 48 chr3 110364203 110364576 -49235207 - MTEa LTR MaLR 0 379 9 5 1427 180 294 0 0 chr3 110364894 110364945 -49234838 - L2a LINE L2 0 3426 3376 5 1427 306 115 0 0 chr3 110365108 110365160 -49234623 + (CA)n Simple_repeat Simple_repeat 2 53 0 5 1427 24 53 0 0 chr3 110365366 110365404 -49234379 + AT_rich Low_complexity Low_complexity 1 38 0 5 1427 24 53 0 0 chr3 110365825 110365863 -49233920 + AT_rich Low_complexity Low_complexity 1 38 0 5 1427 405 0 0 0 chr3 110365895 110365940 -49233843 + (CA)n Simple_repeat Simple_repeat 2 46 0 5 1427 631 162 19 0 chr3 110367354 110367459 -49232324 - U6 snRNA snRNA 0 107 1 5 1427 315 0 0 0 chr3 110367774 110367809 -49231974 + (TAAA)n Simple_repeat Simple_repeat 1 35 0 5 1427 3066 211 73 8 chr3 110367900 110368623 -49231160 + Lx9 LINE L1 6706 7475 -169 5 1427 471 18 0 0 chr3 110368626 110368682 -49231101 + (TG)n Simple_repeat Simple_repeat 2 57 0 5 1427 265 279 29 0 chr3 110368695 110368799 -49230984 + Lx9 LINE L1 7536 7642 -2 5 1427 25 31 0 0 chr3 110370087 110370119 -49229664 + AT_rich Low_complexity Low_complexity 1 32 0 5 1427 375 23 0 0 chr3 110371021 110371065 -49228718 + (TA)n Simple_repeat Simple_repeat 1 44 0 5 1427 874 294 101 54 chr3 110371254 110371529 -49228254 + L1M2 LINE L1 4818 5099 -1044 5 1427 1087 167 108 0 chr3 110371529 110371733 -49228050 - URR1A DNA MER1_type 0 226 1 5 1427 874 305 86 30 chr3 110371733 110372364 -49227419 + L1M2 LINE L1 5100 5780 -520 5 1427 242 116 0 23 chr3 110372690 110372734 -49227049 + (TCCCC)n Simple_repeat Simple_repeat 4 46 0 5 1427 414 0 0 0 chr3 110373155 110373201 -49226582 + (TG)n Simple_repeat Simple_repeat 1 46 0 5 1427 25 0 0 0 chr3 110374297 110374322 -49225461 + AT_rich Low_complexity Low_complexity 1 25 0 5 1427 197 385 76 13 chr3 110375251 110375409 -49224374 + MIR SINE MIR 9 176 -86 5 1427 228 331 70 62 chr3 110375727 110375856 -49223927 - MER5A DNA MER1_type -25 164 35 5 1427 257 303 105 16 chr3 110376302 110376426 -49223357 + B1_Mm SINE Alu 13 147 0 5 1427 447 19 0 0 chr3 110376442 110376494 -49223289 + (ATGTG)n Simple_repeat Simple_repeat 4 55 0 5 1427 1210 329 30 4 chr3 110376524 110376953 -49222830 + Lx8 LINE L1 6028 6481 -992 5 1427 1099 269 31 7 chr3 110376955 110377243 -49222540 - Lx6 LINE L1 -23 7437 7143 5 1427 1455 322 51 30 chr3 110378038 110378608 -49221175 + RMER15-int LTR ERVL 4159 4740 -259 5 1427 1082 178 114 0 chr3 110378933 110379135 -49220648 - URR1A DNA MER1_type -1 225 1 5 1427 371 286 54 30 chr3 110379252 110379418 -49220365 + RMER15 LTR ERVL 276 445 -130 5 1427 297 306 20 10 chr3 110379507 110379606 -49220177 - MLT2C1 LTR ERVL -295 102 3 5 1427 849 136 0 26 chr3 110379674 110379692 -49220091 - B2_Mm2 SINE B2 -21 174 159 5 1427 432 0 0 0 chr3 110379692 110379740 -49220043 + (TTTA)n Simple_repeat Simple_repeat 2 49 0 5 1427 1026 61 0 0 chr3 110379740 110379872 -49219911 - B2_Mm1a SINE B2 -34 159 28 5 1427 1124 214 18 135 chr3 110379982 110380322 -49219461 - RMER1C Other Other -4 1338 1039 5 1427 306 0 0 0 chr3 110382826 110382860 -49216923 + (CA)n Simple_repeat Simple_repeat 2 35 0 5 1427 414 285 47 65 chr3 110383750 110383932 -49215851 + MIR SINE MIR 57 240 -28 5 1427 244 259 17 0 chr3 110384882 110384940 -49214843 + CT-rich Low_complexity Low_complexity 2 60 0 5 1427 624 76 0 0 chr3 110386603 110386695 -49213088 - L1_Mus2 LINE L1 0 6566 6475 5 1427 2917 192 9 4 chr3 110386712 110387251 -49212532 - Lx2B LINE L1 -5 6995 6454 5 1427 4984 133 16 22 chr3 110387251 110388015 -49211768 + Lx2B LINE L1 5632 6393 -607 5 1427 333 0 0 0 chr3 110388015 110388052 -49211731 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 5 1427 4984 133 16 22 chr3 110388052 110388116 -49211667 + Lx2B LINE L1 6394 6455 -545 5 1427 1136 43 0 0 chr3 110388208 110388346 -49211437 + B1_Mm SINE Alu 4 141 -6 5 1427 900 279 93 37 chr3 110388444 110388798 -49210985 - MTEb LTR MaLR 0 379 6 5 1427 306 0 0 0 chr3 110389337 110389371 -49210412 + (TGAA)n Simple_repeat Simple_repeat 4 37 0 5 1427 1705 130 0 0 chr3 110390126 110390387 -49209396 - L1_Mur2 LINE L1 -1276 4601 4341 5 1427 2008 87 30 23 chr3 110390387 110390692 -49209091 + IAPLTR2b LTR ERVK 1 307 -20 5 1427 2267 126 10 32 chr3 110390708 110391157 -49208626 + IAPEz-int LTR ERVK 21 633 -5848 5 1427 3593 126 0 13 chr3 110391157 110391710 -49208073 + L1_Mus4 LINE L1 6081 6626 -10 5 1427 904 105 0 0 chr3 110391959 110392083 -49207700 - Lx3_Mus LINE L1 -126 6883 6760 5 1427 738 285 19 14 chr3 110392600 110392810 -49206973 + B3 SINE B2 6 216 0 5 1427 980 123 14 0 chr3 110392822 110392968 -49206815 + B1_Mus1 SINE Alu 1 148 0 5 1427 798 41 0 0 chr3 110395002 110395100 -49204683 + (TC)n Simple_repeat Simple_repeat 2 99 0 5 1427 192 77 0 0 chr3 110395103 110395129 -49204654 + (TATG)n Simple_repeat Simple_repeat 1 26 0 5 1427 317 337 132 33 chr3 110395237 110395449 -49204334 - ORR1E LTR MaLR -124 235 3 5 1427 299 282 106 49 chr3 110397049 110397295 -49202488 + L1MC3 LINE L1 4462 4721 -1425 5 1427 5261 100 1 0 chr3 110397967 110398696 -49201087 - L1_Mus3 LINE L1 -222 6414 5685 5 1427 1134 94 12 6 chr3 110398696 110398867 -49200916 + L1_Mus3 LINE L1 6461 6632 -6 5 1427 183 42 0 0 chr3 110398876 110398900 -49200883 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 5 1427 341 258 69 46 chr3 110398900 110399030 -49200753 + RLTR11B LTR ERVK 39 171 -282 5 1427 983 333 80 45 chr3 110399410 110400604 -49199179 + L1MC3 LINE L1 5625 6859 -926 5 1427 504 0 0 0 chr3 110400686 110400742 -49199041 + (TG)n Simple_repeat Simple_repeat 2 57 0 5 1427 691 333 62 27 chr3 110400753 110401012 -49198771 - B4A SINE B4 -16 276 9 5 1427 6053 63 1 1 chr3 110401424 110402200 -49197583 - L1Md_F2 LINE L1 -1 6581 5806 5 1427 265 325 116 39 chr3 110402690 110403000 -49196783 + L1MC3 LINE L1 7437 7770 -15 5 1427 1983 279 61 42 chr3 110403168 110403903 -49195880 - Lx8 LINE L1 -534 6939 6191 5 1427 31 0 0 0 chr3 110403908 110403939 -49195844 + AT_rich Low_complexity Low_complexity 1 31 0 5 1427 1430 168 92 50 chr3 110403943 110404303 -49195480 - L1_Mur2 LINE L1 -4380 1497 1089 5 1427 2503 142 20 2 chr3 110404303 110404705 -49195078 - Lx3A LINE L1 -1 6980 6572 5 1427 1430 194 89 75 chr3 110404705 110405027 -49194756 - L1_Mur2 LINE L1 -5998 1088 795 5 1427 1077 280 118 21 chr3 110405245 110405577 -49194206 - Lx5 LINE L1 -7 7043 6680 5 1427 928 249 39 17 chr3 110405572 110405805 -49193978 + Lx5 LINE L1 6463 6700 -350 5 1427 256 174 27 55 chr3 110407495 110407568 -49192215 + CT-rich Low_complexity Low_complexity 2 72 0 5 1427 455 339 58 52 chr3 110407704 110408031 -49191752 + RLTR14-int LTR ERV1 2 330 -4987 5 1427 286 209 46 11 chr3 110408782 110408869 -49190914 + RLTR14-int LTR ERV1 827 916 -4401 5 1427 279 320 70 67 chr3 110408909 110409207 -49190576 + RLTR14-int LTR ERV1 1159 1457 -3606 5 1427 370 306 11 45 chr3 110410077 110410255 -49189528 + RLTR14-int LTR ERV1 2305 2476 -2587 5 1427 309 242 79 20 chr3 110411156 110411257 -49188526 + L1MEg LINE L1 1834 1940 -4144 5 1427 198 91 0 0 chr3 110412096 110412129 -49187654 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 5 1427 227 93 23 0 chr3 110413051 110413094 -49186689 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 5 1427 894 262 152 21 chr3 110413350 110413678 -49186105 + RLTR14 LTR ERV1 1 371 -11 5 1427 336 372 16 0 chr3 110413860 110414048 -49185735 - L1M4b LINE L1 -6454 880 690 5 1427 22 0 0 0 chr3 110414334 110414356 -49185427 + AT_rich Low_complexity Low_complexity 1 22 0 5 1427 23 0 0 0 chr3 110414385 110414408 -49185375 + AT_rich Low_complexity Low_complexity 1 23 0 5 1427 420 304 80 57 chr3 110414579 110414879 -49184904 - L1MC LINE L1 -2409 3737 3431 5 1427 452 324 46 33 chr3 110414956 110415109 -49184674 - RSINE1 SINE B4 -9 156 2 5 1427 1313 272 155 25 chr3 110415115 110416169 -49183614 - L1MC LINE L1 -2785 3361 2171 5 1427 8273 39 3 1 chr3 110416676 110417973 -49181810 - L1Md_F3 LINE L1 -14 6570 5271 5 1427 7825 167 37 5 chr3 110418358 110420207 -49179576 + Lx2B LINE L1 5071 6983 -17 5 1427 610 298 5 122 chr3 110420300 110420514 -49179269 - B3A SINE B2 0 198 10 5 1427 24 85 0 0 chr3 110421286 110421345 -49178438 + AT_rich Low_complexity Low_complexity 1 59 0 5 1427 210 114 57 0 chr3 110422520 110422555 -49177228 + T-rich Low_complexity Low_complexity 2 38 0 5 1427 255 297 52 43 chr3 110422558 110422674 -49177109 - PB1D10 SINE Alu 0 117 1 5 1427 402 228 122 43 chr3 110424226 110424262 -49175521 + Lx9 LINE L1 7441 7476 -168 5 1427 465 103 0 0 chr3 110424262 110424330 -49175453 + (TA)n Simple_repeat Simple_repeat 2 69 0 5 1427 351 0 0 0 chr3 110424330 110424368 -49175415 + (TG)n Simple_repeat Simple_repeat 2 40 0 5 1427 402 228 122 43 chr3 110424368 110424518 -49175265 + Lx9 LINE L1 7477 7642 -2 5 1427 522 79 0 0 chr3 110425469 110425545 -49174238 + (CA)n Simple_repeat Simple_repeat 2 77 0 5 1427 22 0 0 0 chr3 110426667 110426689 -49173094 + AT_rich Low_complexity Low_complexity 1 22 0 6 1427 26 0 0 0 chr3 110428599 110428625 -49171158 + AT_rich Low_complexity Low_complexity 1 26 0 6 1427 27 73 0 0 chr3 110428922 110428977 -49170806 + AT_rich Low_complexity Low_complexity 1 55 0 6 1427 252 59 0 0 chr3 110429713 110429747 -49170036 + (TTG)n Simple_repeat Simple_repeat 1 34 0 6 1427 584 256 282 8 chr3 110429780 110430028 -49169755 + Lx7 LINE L1 7048 7363 -333 6 1427 859 72 26 13 chr3 110430036 110430191 -49169592 + (TCTA)n Simple_repeat Simple_repeat 4 160 0 6 1427 342 154 0 0 chr3 110430207 110430285 -49169498 + CT-rich Low_complexity Low_complexity 1 78 0 6 1427 1506 170 20 70 chr3 110430308 110430663 -49169120 + Lx7 LINE L1 7360 7696 0 6 1427 1577 207 59 19 chr3 110431502 110431877 -49167906 + ORR1B1 LTR MaLR 1 390 -4 6 1427 18204 64 0 2 chr3 110433291 110436385 -49163398 - L1Md_F2 LINE L1 -1 6581 3494 6 1427 972 275 39 14 chr3 110436536 110436816 -49162967 - B4A SINE B4 0 292 6 6 1427 250 239 44 22 chr3 110436844 110436934 -49162849 - Lx4B LINE L1 -9 7049 6958 6 1427 180 0 0 0 chr3 110437050 110437070 -49162713 + (T)n Simple_repeat Simple_repeat 1 20 0 6 1427 1982 106 3 23 chr3 110437452 110437762 -49162021 - L1Md_F2 LINE L1 0 6582 6279 6 1427 304 380 46 23 chr3 110438414 110438589 -49161194 - MER63A DNA AcHobo -10 200 22 6 1427 281 351 52 35 chr3 110438876 110438991 -49160792 - PB1D10 SINE Alu 0 117 1 6 1427 352 369 16 0 chr3 110439782 110439904 -49159879 - ID_B1 SINE B4 -11 213 90 6 1427 317 288 31 39 chr3 110440014 110440144 -49159639 - L3 LINE CR1 -574 3915 3787 6 1427 271 349 58 26 chr3 110440632 110440788 -49158995 + MLT1F2 LTR MaLR 62 222 -338 6 1427 294 151 0 0 chr3 110440804 110440877 -49158906 + (TA)n Simple_repeat Simple_repeat 2 74 0 6 1427 919 297 65 25 chr3 110440884 110441237 -49158546 + MLT1F2 LTR MaLR 192 558 -2 6 1427 381 307 73 19 chr3 110441326 110441532 -49158251 - L1ME1 LINE L1 -108 6071 5855 6 1427 295 190 89 0 chr3 110442747 110442826 -49156957 - Lx5 LINE L1 -1181 5869 5784 6 1427 1482 303 153 38 chr3 110442969 110444096 -49155687 + Lx9 LINE L1 6140 7395 -249 6 1427 180 250 70 18 chr3 110444162 110444219 -49155564 + L4 LINE RTE 641 700 -1329 6 1427 417 234 84 0 chr3 110444408 110444515 -49155268 - B1_Mur4 SINE Alu -12 138 23 6 1427 451 253 21 0 chr3 110444744 110444839 -49154944 - B3 SINE B2 -119 97 1 6 1427 312 27 0 0 chr3 110444995 110445032 -49154751 + (CA)n Simple_repeat Simple_repeat 2 38 0 6 1427 560 27 14 0 chr3 110445032 110445105 -49154678 + (GA)n Simple_repeat Simple_repeat 2 76 0 6 1427 21 82 0 0 chr3 110445564 110445613 -49154170 + AT_rich Low_complexity Low_complexity 1 49 0 6 1427 195 125 0 0 chr3 110445613 110445653 -49154130 + (GA)n Simple_repeat Simple_repeat 1 40 0 6 1427 21 0 0 0 chr3 110446336 110446357 -49153426 + AT_rich Low_complexity Low_complexity 1 21 0 6 1427 387 0 0 0 chr3 110446374 110446417 -49153366 + (TA)n Simple_repeat Simple_repeat 1 43 0 6 1427 266 263 25 50 chr3 110446865 110446945 -49152838 - RLTR14-int LTR ERV1 -4790 527 450 6 1427 315 304 19 19 chr3 110447120 110447224 -49152559 - RLTR14 LTR ERV1 -278 104 1 6 1427 358 372 33 0 chr3 110447458 110447673 -49152110 + L1MC1 LINE L1 6112 6333 0 6 1427 351 341 154 5 chr3 110447707 110447928 -49151855 - L2 LINE L2 -1234 2185 1932 6 1427 853 107 8 15 chr3 110447934 110448067 -49151716 - Lx LINE L1 -627 6027 5896 6 1427 288 127 0 28 chr3 110448061 110448113 -49151670 + Lx2 LINE L1 6748 6784 -213 6 1427 360 360 77 20 chr3 110448349 110448649 -49151134 - L2 LINE L2 -1783 1636 1320 6 1427 8256 35 15 1 chr3 110449970 110451234 -49148549 - L1Md_F3 LINE L1 -2 6582 5306 6 1427 619 87 0 0 chr3 110451232 110451324 -49148459 + L1Md_F LINE L1 979 1070 -5449 6 1427 331 300 105 6 chr3 110451640 110451811 -49147972 + MIR SINE MIR 41 228 -34 6 1427 551 306 79 73 chr3 110451880 110452222 -49147561 - MLT1B LTR MaLR -42 348 5 6 1427 216 204 0 0 chr3 110453222 110453266 -49146517 + T-rich Low_complexity Low_complexity 1 44 0 6 1427 280 285 70 76 chr3 110453305 110453476 -49146307 - MLT1C LTR MaLR -275 192 23 6 1427 544 254 23 45 chr3 110453831 110453963 -49145820 - B3A SINE B2 -67 131 3 6 1427 495 0 0 0 chr3 110454923 110454978 -49144805 + (GAAA)n Simple_repeat Simple_repeat 3 57 0 6 1427 1791 314 14 15 chr3 110455500 110456083 -49143700 - Lx7 LINE L1 -1039 6657 6076 6 1427 1858 294 43 22 chr3 110456137 110456808 -49142975 + Lx7 LINE L1 6677 7361 -335 6 1427 225 94 0 0 chr3 110456849 110456881 -49142902 + (GA)n Simple_repeat Simple_repeat 1 32 0 6 1427 186 43 0 0 chr3 110458304 110458327 -49141456 + (T)n Simple_repeat Simple_repeat 1 23 0 6 1427 408 302 50 35 chr3 110458349 110458548 -49141235 - CR1_Mam LINE CR1 -1204 1000 799 6 1427 736 305 50 43 chr3 110458658 110458939 -49140844 - MTEb LTR MaLR 0 379 97 6 1427 200 294 11 11 chr3 110459673 110459766 -49140017 + (TTA)n Simple_repeat Simple_repeat 2 94 0 6 1427 217 320 10 30 chr3 110461008 110461108 -49138675 - PB1D7 SINE Alu 0 120 23 6 1427 7155 109 16 8 chr3 110462617 110464139 -49135644 - L1_Mus3 LINE L1 -7 6631 5102 6 1427 5721 103 1 0 chr3 110464136 110465020 -49134763 - L1_Mus3 LINE L1 -3768 2115 1231 6 1427 7344 86 6 9 chr3 110465020 110466221 -49133562 + L1_Mus2 LINE L1 5370 6566 0 6 1427 562 255 13 19 chr3 110466243 110466399 -49133384 - L1_Mus3 LINE L1 -5795 821 667 6 1427 250 316 18 0 chr3 110466729 110466843 -49132940 + (TATG)n Simple_repeat Simple_repeat 1 116 0 6 1427 2485 85 26 0 chr3 110467184 110467525 -49132258 + L1_Mus2 LINE L1 6215 6564 -2 6 1427 477 369 72 4 chr3 110467714 110467978 -49131805 - MLT1A1 LTR MaLR -122 286 5 6 1427 406 275 56 6 chr3 110468386 110468547 -49131236 + L1MA10 LINE L1 6162 6330 -4 6 1427 324 390 29 46 chr3 110468879 110469118 -49130665 + MLT1E2 LTR MaLR 217 451 -176 6 1427 1167 193 13 55 chr3 110469185 110469421 -49130362 - URR1A DNA MER1_type 0 226 1 6 1427 213 39 0 0 chr3 110469572 110469598 -49130185 + (TAA)n Simple_repeat Simple_repeat 1 26 0 6 1427 437 312 82 38 chr3 110471171 110471207 -49128576 - B3A SINE B2 0 198 164 6 1427 461 17 17 0 chr3 110471207 110471265 -49128518 + (TG)n Simple_repeat Simple_repeat 1 59 0 6 1427 437 312 82 38 chr3 110471265 110471411 -49128372 - B3A SINE B2 -35 163 8 6 1427 209 200 0 24 chr3 110471447 110471488 -49128295 + CT-rich Low_complexity Low_complexity 3 42 0 6 1427 548 346 50 91 chr3 110471521 110471839 -49127944 + B4A SINE B4 4 281 -11 6 1427 288 127 0 0 chr3 110471842 110471897 -49127886 + (GA)n Simple_repeat Simple_repeat 2 56 0 6 1427 755 283 63 0 chr3 110471914 110472119 -49127664 + ID_B1 SINE B4 6 223 -1 6 1427 324 0 0 0 chr3 110473356 110473392 -49126391 + (TGAA)n Simple_repeat Simple_repeat 1 36 0 6 1427 201 293 62 83 chr3 110473508 110473653 -49126130 + MIRb SINE MIR 61 202 -66 6 1427 431 168 11 0 chr3 110474664 110474759 -49125024 + (CA)n Simple_repeat Simple_repeat 1 96 0 6 1427 230 273 15 0 chr3 110475099 110475165 -49124618 + (CATATA)n Simple_repeat Simple_repeat 3 69 0 6 1427 1060 200 29 50 chr3 110475258 110475537 -49124246 - Charlie26a DNA MER1_type 0 325 53 6 1427 255 342 69 44 chr3 110475553 110475712 -49124071 - MIRc SINE MIR -38 230 68 6 1427 327 376 59 42 chr3 110477840 110478126 -49121657 - B4A SINE B4 0 292 2 6 1427 222 128 0 0 chr3 110478442 110478481 -49121302 + (TG)n Simple_repeat Simple_repeat 2 40 0 6 1427 455 329 36 0 chr3 110478487 110478624 -49121159 - RSINE1 SINE B4 -13 152 11 6 1427 1966 222 100 28 chr3 110479035 110479292 -49120491 - L1_Mur3 LINE L1 -765 5115 4838 6 1427 360 0 0 0 chr3 110479292 110479332 -49120451 + (TC)n Simple_repeat Simple_repeat 2 41 0 6 1427 189 0 0 0 chr3 110479332 110479352 -49120431 + (TG)n Simple_repeat Simple_repeat 2 22 0 6 1427 1966 222 100 28 chr3 110479352 110479732 -49120051 - L1_Mur3 LINE L1 -1043 4837 4434 6 1427 37881 31 0 0 chr3 110479734 110486097 -49113686 - L1Md_T LINE L1 0 6585 126 6 1427 370 141 0 53 chr3 110486086 110486161 -49113622 - L1_Mur3 LINE L1 -1427 4453 4383 6 1427 297 0 0 0 chr3 110486165 110486198 -49113585 + (TC)n Simple_repeat Simple_repeat 2 34 0 6 1427 489 17 0 0 chr3 110486198 110486255 -49113528 + (TG)n Simple_repeat Simple_repeat 1 58 0 6 1427 1318 194 56 27 chr3 110486258 110486596 -49113187 - L1_Mur3 LINE L1 -1640 4240 3893 6 1427 26 0 0 0 chr3 110488625 110488651 -49111132 + AT_rich Low_complexity Low_complexity 1 26 0 6 1427 213 152 0 21 chr3 110490364 110490411 -49109372 + A-rich Low_complexity Low_complexity 3 48 0 6 1427 1000 217 184 81 chr3 110490415 110490736 -49109047 - ORR1C2 LTR MaLR -30 354 1 6 1427 29 28 0 0 chr3 110491007 110491043 -49108740 + AT_rich Low_complexity Low_complexity 1 36 0 6 1427 3929 54 24 0 chr3 110491090 110491587 -49108196 - L1Md_F2 LINE L1 0 6582 6074 6 1427 5236 116 21 8 chr3 110491741 110492564 -49107219 + Lx3B LINE L1 6136 6968 -5 6 1427 26 0 0 0 chr3 110492565 110492591 -49107192 + AT_rich Low_complexity Low_complexity 1 26 0 6 1427 1130 78 0 0 chr3 110492637 110492779 -49107004 + B1_Mus1 SINE Alu 1 142 -6 6 1427 221 0 35 0 chr3 110492781 110492810 -49106973 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 6 1427 229 224 31 115 chr3 110492950 110493046 -49106737 + MLT1D LTR MaLR 412 499 -6 6 178 776 343 93 38 chr3 110493038 110493879 -49105904 + MLT1-int LTR MaLR 90 1001 -488 6 1428 348 247 0 0 chr3 110494025 110494098 -49105685 + ID4 SINE ID 1 73 -10 6 1428 186 43 0 0 chr3 110494100 110494123 -49105660 + (TAAA)n Simple_repeat Simple_repeat 1 23 0 6 1428 293 338 55 55 chr3 110494376 110494595 -49105188 + MLT1-int LTR MaLR 1123 1341 -30 6 1428 30 0 0 0 chr3 110494650 110494680 -49105103 + AT_rich Low_complexity Low_complexity 1 30 0 6 1428 393 286 9 19 chr3 110494680 110494787 -49104996 - B1_Mur1 SINE Alu -1 148 43 6 1428 24 0 0 0 chr3 110496097 110496121 -49103662 + AT_rich Low_complexity Low_complexity 1 24 0 6 1428 180 158 0 0 chr3 110497015 110497053 -49102730 + (CCAA)n Simple_repeat Simple_repeat 1 38 0 6 1428 23 0 0 0 chr3 110497656 110497679 -49102104 + AT_rich Low_complexity Low_complexity 1 23 0 6 1428 195 69 0 0 chr3 110497923 110497952 -49101831 + (CA)n Simple_repeat Simple_repeat 2 30 0 7 1428 27 29 0 0 chr3 110498573 110498607 -49101176 + AT_rich Low_complexity Low_complexity 1 34 0 7 1428 186 103 0 0 chr3 110499688 110499717 -49100066 + (TA)n Simple_repeat Simple_repeat 1 29 0 7 1428 955 233 235 32 chr3 110500519 110500830 -49098953 + ORR1D1 LTR MaLR 1 374 0 1 1428 754 309 137 20 chr3 110501491 110501884 -49097899 + RMER5 LTR ERV1 87 525 -9 2 1428 23 54 0 0 chr3 110502549 110502586 -49097197 + AT_rich Low_complexity Low_complexity 1 37 0 3 1428 312 344 354 10 chr3 110502621 110502819 -49096964 + B4A SINE B4 2 267 -25 4 1428 254 132 0 19 chr3 110502898 110502952 -49096831 + (CA)n Simple_repeat Simple_repeat 2 54 0 5 1428 202 239 0 0 chr3 110503053 110503099 -49096684 + T-rich Low_complexity Low_complexity 1 46 0 6 1428 240 86 0 0 chr3 110503543 110503578 -49096205 + (TTTA)n Simple_repeat Simple_repeat 3 37 0 7 1428 418 316 63 0 chr3 110503607 110503702 -49096081 - RSINE1 SINE B4 -17 148 48 8 1428 4594 68 8 0 chr3 110504178 110504793 -49094990 + L1Md_F2 LINE L1 4967 5586 -297 9 1428 7589 62 11 2 chr3 110504794 110505767 -49094016 + L1Md_F2 LINE L1 5588 6569 -13 9 1428 193 0 61 30 chr3 110505783 110505816 -49093967 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 1 1428 303 372 34 74 chr3 110506838 110507134 -49092649 + L2a LINE L2 2632 2915 -504 1 1428 331 298 95 30 chr3 110507176 110507439 -49092344 + MER33 DNA MER1_type 44 323 -1 1 1428 409 346 104 19 chr3 110507479 110507747 -49092036 + L2a LINE L2 2945 3235 -191 1 1428 1985 103 90 3 chr3 110508493 110508794 -49090989 - ORR1A2 LTR MaLR 0 327 1 1 1428 268 312 54 70 chr3 110508831 110509017 -49090766 - BLACKJACK DNA AcHobo -2665 279 97 1 1428 236 167 11 87 chr3 110509069 110509161 -49090622 + A-rich Low_complexity Low_complexity 1 85 0 1 1428 568 291 35 0 chr3 110509242 110509383 -49090400 + B3 SINE B2 71 216 0 1 1428 200 125 25 0 chr3 110509984 110510024 -49089759 + (CAAAAA)n Simple_repeat Simple_repeat 3 43 0 1 1428 210 71 0 0 chr3 110510408 110510436 -49089347 + (TTA)n Simple_repeat Simple_repeat 2 29 0 1 1428 1367 245 100 3 chr3 110510510 110510829 -49088954 - MTD LTR MaLR -68 351 2 1 1428 355 201 170 12 chr3 110511191 110511362 -49088421 + Lx9 LINE L1 7447 7644 0 2 1428 9309 101 43 2 chr3 110511493 110512996 -49086787 + Lx3_Mus LINE L1 5433 7009 0 2 1428 22 0 0 0 chr3 110512996 110513018 -49086765 + AT_rich Low_complexity Low_complexity 1 22 0 2 1428 22 0 0 0 chr3 110513099 110513121 -49086662 + AT_rich Low_complexity Low_complexity 1 22 0 2 1428 5170 76 0 4 chr3 110513689 110514379 -49085404 + L1Md_F3 LINE L1 4900 5586 -297 2 1428 7720 39 30 5 chr3 110514379 110515352 -49084431 + L1Md_F3 LINE L1 5587 6583 -1 2 1428 5460 104 6 3 chr3 110517073 110517920 -49081863 - Lx3_Mus LINE L1 -1075 5934 5087 2 1428 2475 107 13 0 chr3 110517917 110518291 -49081492 - Lx3_Mus LINE L1 -1377 4509 4131 2 1428 351 161 45 11 chr3 110518291 110518379 -49081404 + Lx3A LINE L1 6888 6978 -3 2 1428 249 294 58 77 chr3 110519197 110519352 -49080431 + MER3 DNA MER1_type 54 205 -4 2 1428 728 323 0 13 chr3 110519460 110519692 -49080091 + Lx6 LINE L1 7205 7433 -27 2 1428 294 372 133 20 chr3 110520081 110520533 -49079250 + L2a LINE L2 2914 3416 -10 2 1428 21 36 0 0 chr3 110520631 110520659 -49079124 + AT_rich Low_complexity Low_complexity 1 28 0 3 1428 27 0 0 0 chr3 110521180 110521207 -49078576 + AT_rich Low_complexity Low_complexity 1 27 0 3 1428 850 134 17 0 chr3 110522472 110522644 -49077139 + (TCTCTG)n Simple_repeat Simple_repeat 6 180 0 3 1428 486 0 0 0 chr3 110522641 110522695 -49077088 + (TG)n Simple_repeat Simple_repeat 1 54 0 3 1428 421 341 70 5 chr3 110522889 110523104 -49076679 + MER2 DNA MER2_type 87 315 -30 3 1428 286 28 0 0 chr3 110523354 110523407 -49076376 - L1_Mus2 LINE L1 0 6582 6527 3 1428 1104 84 14 0 chr3 110523409 110523552 -49076231 + B1_Mus1 SINE Alu 3 147 -1 3 1428 180 0 0 0 chr3 110523553 110523573 -49076210 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 3 1428 255 81 0 0 chr3 110523605 110523642 -49076141 - L1_Mus2 LINE L1 -30 6536 6500 3 1428 187 132 18 36 chr3 110525211 110525266 -49074517 + (TAGA)n Simple_repeat Simple_repeat 4 57 0 3 1428 1125 74 14 0 chr3 110525280 110525496 -49074287 + (TCTA)n Simple_repeat Simple_repeat 1 218 0 3 1428 2539 231 55 20 chr3 110526065 110526264 -49073519 - Lx9 LINE L1 0 7644 7454 4 1428 477 0 0 0 chr3 110526264 110526317 -49073466 + (CA)n Simple_repeat Simple_repeat 2 54 0 4 1428 2539 231 55 20 chr3 110526317 110526820 -49072963 - Lx9 LINE L1 -191 7453 6917 4 1428 387 293 77 36 chr3 110526989 110527184 -49072599 + RMER20B LTR ERVK 131 333 -294 4 1428 225 0 0 0 chr3 110527196 110527221 -49072562 + (CA)n Simple_repeat Simple_repeat 1 25 0 4 1428 443 296 44 41 chr3 110527279 110527366 -49072417 - Lx9 LINE L1 -1269 6375 6289 4 1428 1208 194 4 23 chr3 110527366 110527630 -49072153 - Lx3B LINE L1 -5 6968 6710 4 1428 1103 248 68 41 chr3 110527630 110528117 -49071666 - Lx9 LINE L1 -1356 6288 5703 4 1428 479 326 5 37 chr3 110528432 110528620 -49071163 + B3A SINE B2 1 182 -16 4 1428 408 226 35 9 chr3 110528736 110528852 -49070931 + Lx9 LINE L1 7372 7490 -154 4 1428 245 151 19 0 chr3 110528853 110528906 -49070877 + (CA)n Simple_repeat Simple_repeat 1 54 0 4 1428 21 0 0 0 chr3 110529067 110529088 -49070695 + AT_rich Low_complexity Low_complexity 1 21 0 4 1428 302 131 0 16 chr3 110529106 110529168 -49070615 + Lx9 LINE L1 7505 7565 -79 4 1428 746 352 31 23 chr3 110529775 110530124 -49069659 + MLT1A LTR MaLR 15 366 -8 4 1428 771 92 0 0 chr3 110530503 110530612 -49069171 + (TC)n Simple_repeat Simple_repeat 2 110 0 5 1428 873 322 72 29 chr3 110530658 110531103 -49068680 - Lx8 LINE L1 -317 7156 6693 5 1428 1372 249 106 77 chr3 110531103 110531765 -49068018 - RMER6C LTR ERVK 0 690 10 5 1428 226 320 26 0 chr3 110531801 110531879 -49067904 - Lx7 LINE L1 -1030 6666 6587 5 1428 427 286 52 33 chr3 110532233 110532443 -49067340 - B3 SINE B2 -1 215 2 5 1428 497 359 0 13 chr3 110533335 110533493 -49066290 + RSINE1 SINE B4 5 160 -5 5 1428 291 85 0 0 chr3 110533562 110533609 -49066174 + (CA)n Simple_repeat Simple_repeat 2 48 0 5 1428 303 304 85 33 chr3 110534164 110534317 -49065466 + MER44B DNA MER2_type 2 162 -388 5 1428 31 68 0 0 chr3 110535481 110535540 -49064243 + AT_rich Low_complexity Low_complexity 1 59 0 5 1428 1322 84 0 55 chr3 110535553 110535754 -49064029 - B2_Mm2 SINE B2 -5 190 1 5 1428 697 142 0 45 chr3 110536928 110537052 -49062731 + B1_Mm SINE Alu 21 139 -8 6 1428 357 86 0 0 chr3 110537052 110537110 -49062673 + (CCAA)n Simple_repeat Simple_repeat 2 59 0 6 1428 330 331 49 0 chr3 110537919 110538061 -49061722 - MER3 DNA MER1_type -48 161 13 6 1428 5960 51 60 1 chr3 110539053 110539816 -49059967 - RLTR13C2 LTR ERVK 0 808 1 6 1428 593 14 0 13 chr3 110539820 110539895 -49059888 + (CA)n Simple_repeat Simple_repeat 1 74 0 6 1428 333 47 0 0 chr3 110539938 110539981 -49059802 + (TG)n Simple_repeat Simple_repeat 2 44 0 6 1428 227 69 33 49 chr3 110540118 110540179 -49059604 + (TTTG)n Simple_repeat Simple_repeat 1 60 0 6 1428 1047 89 7 40 chr3 110540179 110540331 -49059452 - B1_Mus1 SINE Alu -1 147 1 6 1428 552 30 0 0 chr3 110540349 110540415 -49059368 + (TC)n Simple_repeat Simple_repeat 1 66 0 6 1428 521 151 0 41 chr3 110540416 110540513 -49059270 - RLTR14 LTR ERV1 -44 338 246 6 1428 770 215 104 0 chr3 110540516 110540679 -49059104 + Lx5 LINE L1 6569 6748 -302 7 1428 1612 228 12 17 chr3 110541196 110541540 -49058243 - Lx6 LINE L1 -712 6748 6407 7 1428 573 375 56 11 chr3 110541906 110542173 -49057610 + B4A SINE B4 2 280 -12 7 1428 2421 198 107 27 chr3 110542453 110543090 -49056693 + RMER6C LTR ERVK 1 688 -2 7 1428 2219 98 32 0 chr3 110543172 110543488 -49056295 + Lx3_Mus LINE L1 6676 7001 -8 7 1428 225 211 0 0 chr3 110543499 110543551 -49056232 + (TA)n Simple_repeat Simple_repeat 1 52 0 7 1428 226 328 155 8 chr3 110544016 110544145 -49055638 + MIRb SINE MIR 43 190 -78 7 1428 39 22 0 0 chr3 110544963 110545009 -49054774 + AT_rich Low_complexity Low_complexity 1 46 0 7 1428 2553 230 3 26 chr3 110545090 110545671 -49054112 + Lx2B LINE L1 6428 6995 -5 7 1428 218 367 76 0 chr3 110545746 110545825 -49053958 - PB1D10 SINE Alu -11 106 22 7 1428 201 39 0 0 chr3 110546037 110546063 -49053720 + (TTG)n Simple_repeat Simple_repeat 2 27 0 8 1428 2753 131 0 49 chr3 110549887 110550377 -49049406 + Lx LINE L1 6171 6636 -18 8 1428 360 0 0 0 chr3 110550571 110550611 -49049172 + (TG)n Simple_repeat Simple_repeat 1 40 0 8 1428 858 81 0 0 chr3 110550611 110550734 -49049049 + (GA)n Simple_repeat Simple_repeat 1 124 0 8 1428 355 290 51 129 chr3 110550849 110551027 -49048756 - B4 SINE B4 -127 165 2 8 1428 264 322 40 56 chr3 110551288 110551413 -49048370 - B1F SINE Alu 0 149 27 8 1428 537 66 33 0 chr3 110554314 110554405 -49045378 + (TA)n Simple_repeat Simple_repeat 2 95 0 8 1428 1268 304 59 97 chr3 110554945 110555695 -49044088 - Lx9 LINE L1 -175 7469 6749 8 1428 2956 270 47 16 chr3 110555701 110556845 -49042938 + L1_Rod LINE L1 1489 2668 -3179 8 1428 21 0 0 0 chr3 110557321 110557342 -49042441 + AT_rich Low_complexity Low_complexity 1 21 0 8 1428 256 300 74 12 chr3 110557622 110557703 -49042080 + B4A SINE B4 30 115 -177 9 1428 617 236 78 6 chr3 110557705 110557871 -49041912 - Lx6 LINE L1 -16 7444 7267 9 1428 447 282 8 8 chr3 110557874 110557992 -49041791 + ID_B1 SINE B4 104 221 -3 9 1428 29 47 0 0 chr3 110559473 110559516 -49040267 + AT_rich Low_complexity Low_complexity 1 43 0 9 1428 921 322 70 30 chr3 110559720 110560149 -49039634 - Lx7 LINE L1 -378 7318 6873 9 1428 7358 82 9 1 chr3 110560149 110561239 -49038544 - L1_Mus1 LINE L1 0 6567 5487 9 1428 1125 313 72 58 chr3 110561247 110561830 -49037953 - Lx7 LINE L1 -841 6855 6265 9 1428 354 23 0 0 chr3 110562128 110562171 -49037612 + (CA)n Simple_repeat Simple_repeat 1 43 0 9 1428 1812 192 136 6 chr3 110562197 110562558 -49037225 - MTC LTR MaLR 0 421 14 9 1428 358 92 26 13 chr3 110562951 110563028 -49036755 + (TCTA)n Simple_repeat Simple_repeat 4 81 0 9 1428 330 259 53 66 chr3 110563212 110563558 -49036225 - Lx7 LINE L1 -5 7691 7365 9 1428 428 150 12 0 chr3 110563565 110563645 -49036138 + (TAG)n Simple_repeat Simple_repeat 3 83 0 1 1428 229 211 0 0 chr3 110563670 110563722 -49036061 - Lx7 LINE L1 -366 7330 7279 9 1428 544 315 48 19 chr3 110564212 110564419 -49035364 - Lx6 LINE L1 -166 7294 7082 1 1428 496 297 11 49 chr3 110564409 110564593 -49035190 + Lx5 LINE L1 6509 6685 -365 1 1428 7886 125 20 6 chr3 110564637 110567027 -49032756 - L1VL4 LINE L1 -3049 2837 368 1 1428 396 130 39 0 chr3 110567029 110567106 -49032677 - L1_Mur2 LINE L1 -1533 4344 4265 1 1428 6368 166 101 8 chr3 110567097 110568284 -49031499 + Lx4A LINE L1 5743 7039 -19 1 1428 1782 343 36 19 chr3 110570217 110571013 -49028770 - Lx8 LINE L1 -250 7223 6414 1 1428 200 143 24 0 chr3 110571202 110571244 -49028539 + CT-rich Low_complexity Low_complexity 2 44 0 1 1428 208 151 55 36 chr3 110571603 110571658 -49028125 + T-rich Low_complexity Low_complexity 5 60 0 1 1428 301 258 91 77 chr3 110571920 110572024 -49027759 - B1_Mus2 SINE Alu 0 147 48 1 1428 396 0 0 0 chr3 110572024 110572068 -49027715 + (TC)n Simple_repeat Simple_repeat 2 45 0 1 1428 301 258 91 77 chr3 110572068 110572106 -49027677 - B1_Mus2 SINE Alu -100 47 4 1 1428 2682 180 67 56 chr3 110572124 110572673 -49027110 + Lx5 LINE L1 5096 5652 -228 1 1428 743 88 16 8 chr3 110572673 110572799 -49026984 - L1_Mus3 LINE L1 -4 6634 6508 1 1428 2682 180 67 56 chr3 110572799 110572889 -49026894 + Lx5 LINE L1 5653 5742 -138 1 1428 34187 25 2 2 chr3 110572908 110577703 -49022080 - L1Md_A LINE L1 0 6582 1790 1 1428 1061 183 224 12 chr3 110577698 110578041 -49021742 - L1Md_F LINE L1 -6103 416 1 1 1428 253 83 0 0 chr3 110578057 110578093 -49021690 + Lx5 LINE L1 5785 5820 -1230 1 1428 423 329 77 68 chr3 110578154 110578524 -49021259 + RMER20B LTR ERVK 24 399 -117 1 1428 794 298 78 10 chr3 110578641 110578949 -49020834 + Lx6 LINE L1 5820 6148 -1312 1 1428 1006 176 6 6 chr3 110578973 110579156 -49020627 + RLTR11A2 LTR ERVK 345 527 0 1 1428 2560 286 102 7 chr3 110579186 110580042 -49019741 + Lx6 LINE L1 6524 7460 0 1 1428 384 22 0 0 chr3 110580842 110580887 -49018896 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 1428 216 0 0 0 chr3 110580887 110580911 -49018872 + (TA)n Simple_repeat Simple_repeat 2 25 0 1 1428 1240 313 55 49 chr3 110581219 110582039 -49017744 - Lx9 LINE L1 -50 7594 6770 1 1428 237 111 31 31 chr3 110583340 110583405 -49016378 + (CAAA)n Simple_repeat Simple_repeat 2 66 0 1 1428 322 125 42 0 chr3 110584058 110584130 -49015653 - Lx2 LINE L1 0 6997 6923 1 1428 4184 265 90 28 chr3 110584419 110585867 -49013916 + Lx9 LINE L1 5864 7514 -130 1 1428 324 0 0 0 chr3 110585867 110585903 -49013880 + (CA)n Simple_repeat Simple_repeat 2 37 0 1 1428 4184 257 99 25 chr3 110585903 110586033 -49013750 + Lx9 LINE L1 7515 7642 -2 1 1428 469 351 74 11 chr3 110586060 110586236 -49013547 - B3 SINE B2 -6 210 24 1 1428 709 118 9 0 chr3 110586282 110586392 -49013391 - L1_Mus2 LINE L1 -2 6564 6454 1 1428 960 311 55 23 chr3 110586434 110587000 -49012783 + L1MA7 LINE L1 5320 5903 -388 1 1428 346 232 53 0 chr3 110587166 110587261 -49012522 + L1MA9 LINE L1 6212 6311 -1 1 1428 606 303 60 26 chr3 110587595 110587783 -49012000 + MTC LTR MaLR 5 200 -221 1 1428 631 183 29 80 chr3 110587783 110587889 -49011894 + B1_Mur4 SINE Alu 1 104 -46 1 1428 4870 69 11 3 chr3 110587889 110588543 -49011240 + L1_Mus1 LINE L1 5909 6567 0 1 1428 631 183 29 80 chr3 110588543 110588573 -49011210 + B1_Mur4 SINE Alu 105 130 -20 1 1428 183 162 0 68 chr3 110588575 110588648 -49011135 + (CAAA)n Simple_repeat Simple_repeat 4 71 0 1 1428 330 268 132 66 chr3 110588665 110588854 -49010929 + MTD LTR MaLR 184 389 -30 1 1428 1347 84 11 0 chr3 110589519 110589793 -49009990 + (GAGAA)n Simple_repeat Simple_repeat 1 276 0 1 1428 27 0 0 0 chr3 110590304 110590331 -49009452 + AT_rich Low_complexity Low_complexity 1 27 0 1 1428 581 53 10 31 chr3 110590373 110590470 -49009313 + (TA)n Simple_repeat Simple_repeat 1 95 0 1 1428 234 0 0 0 chr3 110590905 110590931 -49008852 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 1 1428 297 51 0 0 chr3 110591412 110591451 -49008332 + (TG)n Simple_repeat Simple_repeat 1 39 0 1 1428 233 377 63 31 chr3 110591606 110591765 -49008018 + MIR3 SINE MIR 5 168 -40 1 1428 270 0 0 0 chr3 110592643 110592673 -49007110 + (TA)n Simple_repeat Simple_repeat 2 31 0 1 1428 250 296 10 137 chr3 110593014 110593116 -49006667 + MTB LTR MaLR 180 268 -132 1 1428 2356 289 26 22 chr3 110593136 110593905 -49005878 - Lx8 LINE L1 -403 7070 6299 1 1428 292 89 17 35 chr3 110594011 110594069 -49005714 + (TATG)n Simple_repeat Simple_repeat 4 60 0 1 1428 3457 15 5 0 chr3 110594069 110594462 -49005321 - MTA_Mm LTR MaLR -1 395 1 1 1428 9004 21 34 1 chr3 110594462 110595525 -49004258 - MTA_Mm-int LTR MaLR 0 1098 1 1 1428 3466 15 5 0 chr3 110595525 110595919 -49003864 - MTA_Mm LTR MaLR 0 396 1 1 1428 965 234 28 14 chr3 110596453 110596670 -49003113 - URR1B DNA MER1_type 0 225 6 1 1428 246 308 110 8 chr3 110597456 110597574 -49002209 + MLT1A0 LTR MaLR 192 321 -44 1 1428 1106 183 6 16 chr3 110597807 110598126 -49001657 - Lx2B LINE L1 -828 6172 5793 1 1428 4029 173 51 21 chr3 110598124 110598884 -49000899 + Lx2B LINE L1 6187 6969 -31 1 1428 216 0 24 71 chr3 110598884 110598926 -49000857 + (TAAAA)n Simple_repeat Simple_repeat 2 41 0 1 1428 310 214 0 0 chr3 110598938 110598994 -49000789 + B2_Mm2 SINE B2 1 56 -139 1 1428 310 319 129 7 chr3 110599468 110599607 -49000176 - L1MCa LINE L1 -2730 3591 3436 1 1428 230 200 0 39 chr3 110599624 110599702 -49000081 + CT-rich Low_complexity Low_complexity 1 75 0 1 1428 267 310 82 0 chr3 110599751 110599922 -48999861 - L1MCa LINE L1 -5147 1361 1177 1 1428 4433 159 13 1 chr3 110599924 110601044 -48998739 - Lx2 LINE L1 -766 6231 5099 1 1428 6416 156 11 3 chr3 110601040 110602172 -48997611 + Lx2 LINE L1 3908 5049 -828 1 1428 599 337 42 23 chr3 110602241 110602551 -48997232 - L1MCa LINE L1 -5821 687 372 1 1428 22 35 0 0 chr3 110602776 110602805 -48996978 + AT_rich Low_complexity Low_complexity 1 29 0 1 1428 486 0 0 0 chr3 110603564 110603618 -48996165 + (TA)n Simple_repeat Simple_repeat 2 55 0 1 1428 586 266 80 9 chr3 110604150 110604374 -48995409 - L1MCa LINE L1 -6209 299 60 1 1428 299 65 0 21 chr3 110604409 110604456 -48995327 + (CAA)n Simple_repeat Simple_repeat 2 47 0 1 1428 1369 304 42 33 chr3 110604783 110605477 -48994306 + L1_Mur3 LINE L1 2256 2955 -2925 1 1428 770 314 53 56 chr3 110605507 110605902 -48993881 + Lx8 LINE L1 7080 7473 0 1 1428 23 54 0 0 chr3 110606294 110606331 -48993452 + AT_rich Low_complexity Low_complexity 1 37 0 1 1428 204 40 0 0 chr3 110606470 110606495 -48993288 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 1 1428 26 0 0 0 chr3 110607422 110607448 -48992335 + AT_rich Low_complexity Low_complexity 1 26 0 1 1428 1417 140 4 13 chr3 110607455 110607687 -48992096 - Lx3B LINE L1 -93 6880 6651 1 1428 310 206 16 0 chr3 110607983 110608046 -48991737 + L1_Mm LINE L1 4867 4930 -953 1 1428 375 23 0 0 chr3 110608046 110608090 -48991693 + (TG)n Simple_repeat Simple_repeat 1 44 0 1 1428 1269 155 9 0 chr3 110608139 110608352 -48991431 - Lx2 LINE L1 -18 6979 6765 1 1428 3057 159 15 0 chr3 110608352 110608831 -48990952 - Lx2 LINE L1 -363 6634 6149 1 1428 3865 180 42 0 chr3 110608828 110609376 -48990407 + L1_Mm LINE L1 5133 5704 -179 1 1428 300 27 0 0 chr3 110609376 110609413 -48990370 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 1 1428 3865 180 42 0 chr3 110609413 110609585 -48990198 + L1_Mm LINE L1 5705 5882 -1 1 1428 480 214 264 0 chr3 110609594 110609753 -48990030 + Lx2B LINE L1 4917 5117 -760 1 1428 370 195 51 13 chr3 110609796 110609905 -48989878 + Lx2 LINE L1 6893 6991 -6 1 1428 402 21 0 0 chr3 110609905 110609952 -48989831 + (GA)n Simple_repeat Simple_repeat 2 48 0 1 1428 618 14 0 0 chr3 110609952 110610023 -48989760 + (GGAA)n Simple_repeat Simple_repeat 2 72 0 1 1428 4018 181 12 15 chr3 110610023 110611242 -48988541 + Lx2B LINE L1 5125 6341 -659 1 1428 6109 163 17 7 chr3 110611244 110612345 -48987438 - Lx2 LINE L1 0 6997 5886 1 1428 18672 186 31 17 chr3 110612345 110613834 -48985949 - L1VL4 LINE L1 -533 5353 3845 1 1428 2807 58 87 0 chr3 110613834 110614212 -48985571 - RLTR10A LTR ERVK 0 411 1 1 1428 18672 186 30 16 chr3 110614212 110617070 -48982713 - L1VL4 LINE L1 -2042 3844 940 1 1428 4099 89 11 2 chr3 110617083 110617647 -48982136 - L1_Mus1 LINE L1 -1 6566 5998 1 1428 2278 43 14 0 chr3 110617649 110617926 -48981857 - L1Md_F3 LINE L1 0 6584 6304 1 1428 3441 75 15 0 chr3 110617923 110618512 -48981271 - L1_Mus1 LINE L1 -570 5996 5401 1 1428 10330 99 13 9 chr3 110618512 110620074 -48979709 - L1_Mus1 LINE L1 -1749 4134 2566 1 1428 245 248 0 37 chr3 110620133 110620242 -48979541 + (TAAA)n Simple_repeat Simple_repeat 1 105 0 1 1428 335 152 0 12 chr3 110620991 110621071 -48978712 + (TA)n Simple_repeat Simple_repeat 2 80 0 1 1428 450 240 143 0 chr3 110621109 110621284 -48978499 - Lx9 LINE L1 -50 7594 7395 1 1428 255 314 29 0 chr3 110621284 110621386 -48978397 + Lx9 LINE L1 7226 7330 -314 1 1428 6147 69 6 1 chr3 110621395 110622190 -48977593 - L1Md_F2 LINE L1 -108 6474 5676 1 1428 454 110 0 12 chr3 110622190 110622273 -48977510 + L1Md_F2 LINE L1 6488 6569 -13 1 1428 488 145 0 0 chr3 110622312 110622381 -48977402 + Lx2 LINE L1 6276 6344 -653 1 1428 1511 157 67 26 chr3 110622376 110622689 -48977094 + Lx LINE L1 6317 6642 -12 1 1428 204 40 0 0 chr3 110622693 110622718 -48977065 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 1 1428 3773 137 26 20 chr3 110622718 110623365 -48976418 + Lx2 LINE L1 6347 6997 0 1 1428 1005 39 0 0 chr3 110623539 110623669 -48976114 + (TCTCTG)n Simple_repeat Simple_repeat 1 130 0 1 1429 11025 138 31 71 chr3 110625237 110628584 -48971199 + Lx LINE L1 416 3071 -2812 1 1429 4673 119 96 8 chr3 110628584 110629337 -48970446 + L1_Mus3 LINE L1 5820 6638 0 1 1429 11005 183 29 193 chr3 110629337 110630845 -48968938 + Lx LINE L1 3072 4590 -1293 1 1429 33947 84 7 10 chr3 110630860 110637011 -48962772 - L1Md_F2 LINE L1 -3 6579 450 1 1429 6946 156 15 3 chr3 110637012 110638968 -48960815 + Lx LINE L1 4578 6553 -101 1 1429 21 71 0 0 chr3 110639104 110639146 -48960637 + AT_rich Low_complexity Low_complexity 1 42 0 1 1429 11064 55 5 0 chr3 110639154 110641257 -48958526 - L1Md_F2 LINE L1 -12 6570 4461 1 1429 2911 62 8 0 chr3 110641254 110641644 -48958139 + L1Md_F2 LINE L1 4094 4486 -1397 1 1429 405 257 43 11 chr3 110642396 110642559 -48957224 + MLT2B4 LTR ERVL 4 171 -349 1 1429 234 305 134 0 chr3 110643706 110643788 -48955995 - PB1 SINE Alu -22 105 13 1 1429 264 160 0 20 chr3 110643935 110643986 -48955797 - U2 snRNA snRNA -138 50 1 1 1429 957 292 115 9 chr3 110646034 110646355 -48953428 - RMER15 LTR ERVL -2 573 219 1 1429 489 34 0 0 chr3 110646360 110646419 -48953364 + (TTTC)n Simple_repeat Simple_repeat 2 60 0 1 1429 543 16 0 0 chr3 110646441 110646505 -48953278 + (TTC)n Simple_repeat Simple_repeat 1 64 0 1 1429 4147 122 36 8 chr3 110646511 110647173 -48952610 - Lx3_Mus LINE L1 -12 6997 6317 1 1429 457 140 60 17 chr3 110647234 110647350 -48952433 - L1_Mus4 LINE L1 -8 6628 6508 1 1429 1107 103 0 6 chr3 110647350 110647499 -48952284 + L1_Mm LINE L1 5421 5568 -315 1 1429 529 260 73 39 chr3 110647499 110647703 -48952080 - RMER15 LTR ERVL -338 237 27 1 1429 524 348 131 5 chr3 110648786 110649008 -48950775 - B4A SINE B4 -36 256 7 1 1429 24 0 0 0 chr3 110649380 110649404 -48950379 + AT_rich Low_complexity Low_complexity 1 24 0 1 1429 742 121 56 14 chr3 110649404 110649547 -48950236 - Lx3_Mus LINE L1 -8 7001 6853 1 1429 1259 181 159 29 chr3 110649553 110649696 -48950087 - RLTR9D LTR ERVK -12 391 224 2 1429 3485 97 23 21 chr3 110649696 110650221 -48949562 - L1Md_F2 LINE L1 0 6582 6057 2 1429 1259 181 159 29 chr3 110650221 110650423 -48949360 - RLTR9D LTR ERVK -180 223 1 2 1429 1999 119 3 0 chr3 110650439 110650732 -48949051 - Lx3_Mus LINE L1 -217 6792 6499 1 1429 2274 93 0 0 chr3 110650729 110651039 -48948744 + Lx3_Mus LINE L1 4789 5098 -788 2 1429 26450 13 1 0 chr3 110651027 110654074 -48945709 + L1_Mm LINE L1 2771 5819 -64 2 1429 4472 41 0 0 chr3 110654074 110654606 -48945177 + L1Md_T LINE L1 6051 6582 0 2 1429 6235 85 25 24 chr3 110654617 110656031 -48943752 + Lx3_Mus LINE L1 5101 6497 -512 2 1429 25 0 0 0 chr3 110656980 110657005 -48942778 + AT_rich Low_complexity Low_complexity 1 25 0 2 1429 1377 268 203 32 chr3 110657251 110657961 -48941822 - Lx6 LINE L1 -21 7439 6609 2 1429 705 234 130 22 chr3 110657960 110658330 -48941453 - Lx6 LINE L1 -1241 6219 5810 2 1429 3373 141 9 18 chr3 110658332 110658902 -48940881 + RLTR1D LTR ERV1 25 589 -16 2 1429 1887 220 23 14 chr3 110658914 110659343 -48940440 - Lx6 LINE L1 -73 5807 5375 2 1429 2744 274 82 3 chr3 110659349 110660118 -48939665 - Lx6 LINE L1 -6 7454 6625 2 1429 8416 199 79 6 chr3 110660116 110662209 -48937574 - Lx6 LINE L1 -530 5350 3105 2 1429 1302 192 42 28 chr3 110662209 110662563 -48937220 - Lx6 LINE L1 -3456 2424 2066 2 1429 1529 255 89 25 chr3 110662570 110663041 -48936742 - RLTR16 LTR ERVK -4 501 1 2 1429 1125 193 313 13 chr3 110663108 110663352 -48936431 + RLTR12B LTR ERVK 1 308 -220 2 1429 233 29 29 0 chr3 110663352 110663386 -48936397 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 2 1429 1125 240 106 20 chr3 110663386 110663580 -48936203 + RLTR12B LTR ERVK 309 527 -1 2 1429 1259 264 34 10 chr3 110663603 110664016 -48935767 - Lx6 LINE L1 -3903 1977 1555 2 1429 493 184 0 0 chr3 110664016 110664103 -48935680 + RMER6C LTR ERVK 512 598 -92 2 1429 306 319 178 0 chr3 110664340 110664475 -48935308 - B3 SINE B2 -57 159 1 2 1429 240 86 0 0 chr3 110664488 110664523 -48935260 + (TTTA)n Simple_repeat Simple_repeat 1 35 0 2 1429 446 243 8 116 chr3 110664533 110664613 -48935170 - B1_Mur2 SINE Alu -32 117 37 2 1429 4000 17 53 0 chr3 110664613 110665081 -48934702 - MT2_Mm LTR ERVL 0 493 1 2 1429 446 243 8 116 chr3 110665081 110665121 -48934662 - B1_Mur2 SINE Alu -113 36 10 2 1429 22 0 0 0 chr3 110665328 110665350 -48934433 + AT_rich Low_complexity Low_complexity 1 22 0 2 1429 206 32 0 31 chr3 110665614 110665646 -48934137 + (TTA)n Simple_repeat Simple_repeat 3 33 0 2 1429 183 156 0 0 chr3 110665796 110665828 -48933955 + T-rich Low_complexity Low_complexity 1 32 0 2 1429 1142 74 0 0 chr3 110665828 110665976 -48933807 - B1_Mus1 SINE Alu 0 148 1 2 1429 189 74 0 0 chr3 110666105 110666132 -48933651 + (CATTT)n Simple_repeat Simple_repeat 1 27 0 2 1429 28 0 0 0 chr3 110670019 110670047 -48929736 + AT_rich Low_complexity Low_complexity 1 28 0 2 1429 351 0 0 0 chr3 110670130 110670169 -48929614 + (TG)n Simple_repeat Simple_repeat 2 40 0 2 1429 286 329 0 0 chr3 110670528 110670632 -48929151 + CT-rich Low_complexity Low_complexity 1 104 0 2 1429 589 148 130 0 chr3 110671034 110671142 -48928641 + B2_Mm2 SINE B2 2 123 -72 2 1429 345 47 0 0 chr3 110671182 110671225 -48928558 + (TAGA)n Simple_repeat Simple_repeat 4 46 0 2 1429 222 323 10 30 chr3 110671619 110671718 -48928065 + MIRb SINE MIR 129 225 -43 2 1429 207 100 0 0 chr3 110671857 110671887 -48927896 + (TA)n Simple_repeat Simple_repeat 2 31 0 2 1429 21 0 0 0 chr3 110671908 110671929 -48927854 + AT_rich Low_complexity Low_complexity 1 21 0 2 1429 21 36 0 0 chr3 110672283 110672311 -48927472 + AT_rich Low_complexity Low_complexity 1 28 0 2 1429 2953 82 0 5 chr3 110672313 110672717 -48927066 + L1Md_F2 LINE L1 6176 6577 -5 2 1429 22 0 0 0 chr3 110672786 110672808 -48926975 + AT_rich Low_complexity Low_complexity 1 22 0 2 1429 23 0 0 0 chr3 110672957 110672980 -48926803 + AT_rich Low_complexity Low_complexity 1 23 0 2 1429 257 337 164 11 chr3 110673234 110673417 -48926366 - L4 LINE RTE -314 1715 1505 2 1429 494 292 6 26 chr3 110673508 110673698 -48926085 - L1_Rod LINE L1 -255 5622 5431 2 1429 771 342 34 6 chr3 110673702 110674055 -48925728 + Lx8 LINE L1 6979 7341 -132 2 1429 261 83 0 0 chr3 110674366 110674402 -48925381 + (CA)n Simple_repeat Simple_repeat 1 36 0 2 1429 1179 42 18 0 chr3 110675559 110675725 -48924058 + (TCTA)n Simple_repeat Simple_repeat 4 172 0 2 1429 821 253 81 128 chr3 110675741 110676081 -48923702 - MT2A LTR ERVL -125 476 24 2 1429 1272 349 55 21 chr3 110676161 110676730 -48923053 - Lx5 LINE L1 0 7050 6459 2 1429 2847 170 52 104 chr3 110676730 110677458 -48922325 + RMER6C LTR ERVK 1 690 0 2 1429 1272 214 3440 38 chr3 110677458 110677531 -48922252 - Lx5 LINE L1 -592 6458 6451 2 1429 2174 240 225 1 chr3 110677528 110678050 -48921733 + Lx6 LINE L1 5147 5785 -1688 2 1429 504 0 0 0 chr3 110678050 110678106 -48921677 + (TA)n Simple_repeat Simple_repeat 2 57 0 2 1429 312 27 0 0 chr3 110678106 110678142 -48921641 + (TG)n Simple_repeat Simple_repeat 2 38 0 2 1429 636 134 16 68 chr3 110678142 110678281 -48921502 + Lx6 LINE L1 5786 5920 -1540 2 1429 2106 190 129 58 chr3 110678311 110678830 -48920953 - RLTR31A_Mm LTR ERVK -5 556 1 2 1429 825 286 68 24 chr3 110678832 110679271 -48920512 + Lx6 LINE L1 5939 6416 -634 2 1429 242 287 126 0 chr3 110679374 110679461 -48920322 - ID_B1 SINE B4 -33 191 94 2 1429 205 151 38 0 chr3 110679463 110679516 -48920267 + (TTTA)n Simple_repeat Simple_repeat 1 55 0 2 1429 187 29 27 54 chr3 110680004 110680041 -48919742 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 2 1429 21 0 0 0 chr3 110680545 110680566 -48919217 + AT_rich Low_complexity Low_complexity 1 21 0 2 1429 225 0 0 0 chr3 110681250 110681275 -48918508 + (TG)n Simple_repeat Simple_repeat 2 26 0 2 1429 24 0 0 0 chr3 110681317 110681341 -48918442 + AT_rich Low_complexity Low_complexity 1 24 0 2 1429 3262 238 69 55 chr3 110681677 110682665 -48917118 + Lx6 LINE L1 6458 7459 -1 2 1429 1067 37 0 15 chr3 110682800 110682929 -48916854 + B1_Mm SINE Alu 10 138 -9 2 1429 306 0 0 0 chr3 110682929 110682963 -48916820 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 2 1429 3575 97 126 161 chr3 110683382 110684303 -48915480 + RMER17D LTR ERVK 1 889 0 2 1429 1038 75 0 27 chr3 110684466 110684616 -48915167 + B1_Mus1 SINE Alu 1 146 -2 2 1429 395 78 0 15 chr3 110684768 110684833 -48914950 + (TA)n Simple_repeat Simple_repeat 2 65 0 2 1429 219 36 0 0 chr3 110685403 110685431 -48914352 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 2 1429 330 316 154 58 chr3 110686028 110686592 -48913191 + L1M4c LINE L1 21 638 -5746 2 1429 393 296 9 9 chr3 110686775 110686884 -48912899 + PB1D10 SINE Alu 8 116 -1 2 1429 842 264 30 14 chr3 110686974 110687012 -48912771 + Lx2 LINE L1 6161 6203 -778 2 1429 4332 134 7 0 chr3 110687012 110687685 -48912098 - Lx2 LINE L1 0 6997 6320 2 1429 842 169 7 7 chr3 110687685 110687825 -48911958 + Lx2 LINE L1 6201 6341 -656 2 1429 24 0 0 0 chr3 110688169 110688193 -48911590 + AT_rich Low_complexity Low_complexity 1 24 0 2 1429 526 300 71 60 chr3 110688228 110688958 -48910825 + L1MB3 LINE L1 5200 5935 -248 2 1429 656 191 64 35 chr3 110689192 110689333 -48910450 + B1_Mur4 SINE Alu 5 149 -1 2 1429 227 189 198 10 chr3 110689603 110689699 -48910084 - Charlie14a DNA MER1_type -103 1061 948 2 1429 594 250 15 7 chr3 110690126 110690263 -48909520 + Lx8 LINE L1 7101 7238 -235 2 1429 227 93 23 0 chr3 110690263 110690306 -48909477 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 2 1429 21 36 0 0 chr3 110692531 110692559 -48907224 + AT_rich Low_complexity Low_complexity 1 28 0 2 1429 4700 146 51 43 chr3 110692710 110693611 -48906172 - Lx3C LINE L1 -2 6974 6067 2 1429 261 197 0 0 chr3 110693990 110694056 -48905727 + (TCTCTG)n Simple_repeat Simple_repeat 1 66 0 2 1429 305 213 43 77 chr3 110694056 110694173 -48905610 - L1M4b LINE L1 -5410 1924 1812 2 1429 23 33 0 0 chr3 110694557 110694587 -48905196 + AT_rich Low_complexity Low_complexity 1 30 0 2 1429 626 264 56 28 chr3 110694783 110694962 -48904821 - B3 SINE B2 -27 189 6 2 1429 232 48 23 23 chr3 110696264 110696307 -48903476 + (TTTTTG)n Simple_repeat Simple_repeat 4 46 0 2 1429 236 406 0 19 chr3 110697163 110697271 -48902512 - PB1D10 SINE Alu 0 117 12 2 1429 2896 118 50 2 chr3 110697976 110698435 -48901348 + Lx LINE L1 6156 6636 -18 2 1429 5683 108 32 9 chr3 110699671 110699876 -48899907 - Lx3A LINE L1 -3 6978 6769 2 1429 366 23 0 0 chr3 110699876 110699919 -48899864 + (TG)n Simple_repeat Simple_repeat 2 44 0 2 1429 5683 108 32 9 chr3 110699919 110700599 -48899184 - Lx3A LINE L1 -213 6768 6074 2 1429 393 141 0 0 chr3 110701033 110701104 -48898679 + (TG)n Simple_repeat Simple_repeat 2 72 0 2 1429 2197 318 38 37 chr3 110701126 110701363 -48898420 - Lx8 LINE L1 -375 7098 6851 2 1429 279 0 0 0 chr3 110701363 110701394 -48898389 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 2 1429 2197 318 38 37 chr3 110701394 110702031 -48897752 - Lx8 LINE L1 -623 6850 6223 2 1429 756 0 0 0 chr3 110702058 110702142 -48897641 + (CTTTG)n Simple_repeat Simple_repeat 2 85 0 2 1429 1194 81 0 0 chr3 110702146 110702318 -48897465 + (TTCC)n Simple_repeat Simple_repeat 3 174 0 2 1429 7873 141 25 43 chr3 110702323 110703747 -48896036 - Lx2B LINE L1 -2 6998 5600 2 1429 14405 77 2 9 chr3 110703784 110705746 -48894037 + L1Md_F2 LINE L1 3637 5585 -298 2 1429 6592 81 55 5 chr3 110705747 110706688 -48893095 + L1Md_F2 LINE L1 5587 6574 -8 2 1429 22 0 0 0 chr3 110706724 110706746 -48893037 + AT_rich Low_complexity Low_complexity 1 22 0 2 1429 224 188 15 15 chr3 110707198 110707263 -48892520 + T-rich Low_complexity Low_complexity 5 69 0 2 1429 351 0 0 0 chr3 110707954 110707993 -48891790 + (TTTA)n Simple_repeat Simple_repeat 4 42 0 2 1429 218 261 0 0 chr3 110708004 110708050 -48891733 + (TG)n Simple_repeat Simple_repeat 1 46 0 2 1429 273 350 10 0 chr3 110708050 110708147 -48891636 - RMER15 LTR ERVL -115 460 363 2 1429 1521 273 101 28 chr3 110708231 110709009 -48890774 - Lx5 LINE L1 -16 7444 6450 2 1429 339 246 206 0 chr3 110709024 110709150 -48890633 - Lx5 LINE L1 -1288 6172 6021 2 1429 996 75 0 0 chr3 110709157 110709291 -48890492 + (CTATT)n Simple_repeat Simple_repeat 4 137 0 2 1429 7115 71 4 25 chr3 110709326 110710298 -48889485 - L1_Mus2 LINE L1 -1 6565 5614 2 1429 2933 213 15 17 chr3 110710292 110711014 -48888769 - L1_Mur2 LINE L1 -1510 4367 3647 2 1429 2741 174 13 0 chr3 110711014 110711480 -48888303 + Lx3C LINE L1 6497 6968 -8 2 1429 21 57 0 0 chr3 110711481 110711516 -48888267 + AT_rich Low_complexity Low_complexity 1 35 0 2 1429 29 0 0 0 chr3 110711744 110711773 -48888010 + AT_rich Low_complexity Low_complexity 1 29 0 2 1429 192 40 0 0 chr3 110712357 110712382 -48887401 + (T)n Simple_repeat Simple_repeat 1 25 0 2 1429 189 0 0 0 chr3 110712993 110713014 -48886769 + (A)n Simple_repeat Simple_repeat 1 21 0 2 1429 2436 41 0 0 chr3 110713812 110714106 -48885677 - L1Md_F3 LINE L1 -644 5940 5647 3 1429 1010 61 20 20 chr3 110714106 110714256 -48885527 + L1Md_F3 LINE L1 6433 6582 -2 3 1429 363 44 0 0 chr3 110714457 110714502 -48885281 + (CA)n Simple_repeat Simple_repeat 2 46 0 3 1429 315 0 0 0 chr3 110714692 110714727 -48885056 + (TA)n Simple_repeat Simple_repeat 2 36 0 3 1429 25 31 0 0 chr3 110714825 110714857 -48884926 + AT_rich Low_complexity Low_complexity 1 32 0 3 1429 23 0 0 0 chr3 110715899 110715922 -48883861 + AT_rich Low_complexity Low_complexity 1 23 0 3 1429 6015 168 9 7 chr3 110716103 110717181 -48882602 - Lx2B LINE L1 -70 5807 4728 3 1429 2255 200 55 6 chr3 110717180 110717693 -48882090 + Lx2B LINE L1 5845 6382 -618 3 1429 5298 92 15 56 chr3 110717693 110718553 -48881230 + RLTR22_Mus LTR ERVK 1 825 -983 3 1429 318 294 45 91 chr3 110718807 110718983 -48880800 + RMER12 LTR ERVK 1101 1268 -54 3 1429 2766 203 31 55 chr3 110719049 110719689 -48880094 + Lx2B LINE L1 6375 6999 -1 3 1429 27 29 0 0 chr3 110719805 110719839 -48879944 + AT_rich Low_complexity Low_complexity 1 34 0 3 1429 369 0 0 0 chr3 110720342 110720383 -48879400 + (TC)n Simple_repeat Simple_repeat 2 42 0 3 1429 554 281 88 15 chr3 110720457 110720710 -48879073 + Lx3C LINE L1 6710 7000 0 3 1429 240 302 42 0 chr3 110721390 110721486 -48878297 - RMER12 LTR ERVK -510 812 713 3 1429 469 329 52 9 chr3 110721500 110721712 -48878071 + Lx8 LINE L1 7048 7268 -205 3 1429 682 281 25 30 chr3 110725411 110725613 -48874170 + B3 SINE B2 16 216 0 3 1429 304 244 150 45 chr3 110725657 110725776 -48874007 + PB1D9 SINE Alu 3 126 -21 3 1429 429 225 91 76 chr3 110725784 110725981 -48873802 + Lx3C LINE L1 6777 6976 0 3 1429 188 86 29 0 chr3 110725996 110726031 -48873752 + (CAAAAA)n Simple_repeat Simple_repeat 2 37 0 3 1429 5930 72 0 18 chr3 110726851 110727645 -48872138 - L1Md_F2 LINE L1 -15 6567 5788 3 1429 5709 63 1 1 chr3 110727645 110728376 -48871407 + L1_Mm LINE L1 5153 5883 0 3 1429 248 309 49 12 chr3 110728462 110728544 -48871239 + MLT2B2 LTR ERVL 3 87 -428 3 1429 493 338 0 0 chr3 110728664 110728797 -48870986 - B1_Mur1 SINE Alu -12 137 5 3 1429 404 67 17 0 chr3 110729403 110729463 -48870320 + (CA)n Simple_repeat Simple_repeat 2 62 0 3 1429 26 0 0 0 chr3 110729528 110729554 -48870229 + AT_rich Low_complexity Low_complexity 1 26 0 3 1429 23 33 0 0 chr3 110730526 110730556 -48869227 + AT_rich Low_complexity Low_complexity 1 30 0 3 1429 522 128 11 0 chr3 110730794 110730888 -48868895 - L1_Mus2 LINE L1 -1 6565 6471 3 1429 832 74 0 0 chr3 110730888 110730996 -48868787 + L1_Mus2 LINE L1 6256 6363 -203 3 1429 1032 296 87 54 chr3 110731400 110732008 -48867775 + Lx8 LINE L1 6335 6962 -511 3 1429 192 135 0 0 chr3 110732932 110732969 -48866814 + (CCA)n Simple_repeat Simple_repeat 1 37 0 3 1429 236 54 54 0 chr3 110732979 110733016 -48866767 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 3 1429 241 261 0 14 chr3 110733346 110733416 -48866367 + (CATATA)n Simple_repeat Simple_repeat 2 70 0 3 1429 668 82 33 0 chr3 110733416 110733538 -48866245 + (TCTA)n Simple_repeat Simple_repeat 1 126 0 3 1429 234 383 0 12 chr3 110734050 110734132 -48865651 + RSINE1 SINE B4 1 81 -84 3 1429 888 163 0 0 chr3 110736161 110736523 -48863260 + (TG)n Simple_repeat Simple_repeat 1 362 0 3 1429 683 360 64 8 chr3 110736554 110736820 -48862963 - B4A SINE B4 -6 286 6 3 1429 399 382 94 80 chr3 110736875 110737438 -48862345 + MLT1G3 LTR MaLR 16 586 -9 3 1429 25 0 0 0 chr3 110737581 110737606 -48862177 + AT_rich Low_complexity Low_complexity 1 25 0 3 1429 333 0 0 0 chr3 110737710 110737747 -48862036 + (TG)n Simple_repeat Simple_repeat 2 38 0 3 1429 459 0 0 0 chr3 110737747 110737797 -48861986 + (TA)n Simple_repeat Simple_repeat 2 52 0 3 1429 381 338 35 35 chr3 110738117 110738261 -48861522 - B3 SINE B2 -34 182 39 3 1429 1209 78 0 0 chr3 110738286 110738452 -48861331 + (TTTC)n Simple_repeat Simple_repeat 3 168 0 3 1429 22 35 0 0 chr3 110738452 110738481 -48861302 + AT_rich Low_complexity Low_complexity 1 29 0 3 1429 1150 314 34 0 chr3 110739215 110739568 -48860215 + Lx6 LINE L1 6172 6536 -924 3 1429 445 222 8 79 chr3 110739579 110739706 -48860077 - RLTR12B LTR ERVK -11 517 400 3 1429 3928 135 36 18 chr3 110739720 110740377 -48859406 - Lx LINE L1 -1 6653 5985 3 1429 1215 66 0 23 chr3 110740377 110740548 -48859235 + Lx LINE L1 5795 5961 -693 3 1429 1246 206 26 30 chr3 110740550 110740917 -48858866 - RLTR12B LTR ERVK -109 419 1 3 1429 2048 207 109 18 chr3 110740970 110741476 -48858307 - MYSERV6-int LTR ERVK -90 8869 8318 3 1429 779 171 21 7 chr3 110741482 110741623 -48858160 + RMER13A LTR ERVK 1 143 -717 3 1429 8722 130 30 16 chr3 110741654 110743103 -48856680 + Lx2 LINE L1 5532 6996 -1 3 1429 207 0 0 0 chr3 110743117 110743140 -48856643 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 3 1429 2329 182 103 4 chr3 110743169 110743643 -48856140 + RMER13A LTR ERVK 146 666 -194 3 1429 1496 183 114 72 chr3 110743711 110744151 -48855632 - MYSERV6-int LTR ERVK -644 8315 7845 3 1429 2358 44 7 0 chr3 110744151 110744449 -48855334 - L1Md_T LINE L1 0 6582 6283 3 1429 1496 199 76 41 chr3 110744449 110744524 -48855259 - MYSERV6-int LTR ERVK -1115 7844 7813 3 1429 4405 33 0 0 chr3 110744670 110745186 -48854597 - L1Md_T LINE L1 0 6582 6067 3 1429 423 154 20 71 chr3 110745191 110745289 -48854494 - MYSERV16_I-int LTR ERVK -1583 743 651 3 1429 284 0 28 0 chr3 110745313 110745349 -48854434 + (TTTTTG)n Simple_repeat Simple_repeat 1 37 0 3 1429 232 127 18 18 chr3 110745505 110745561 -48854222 + (TA)n Simple_repeat Simple_repeat 2 57 0 3 1429 884 273 11 53 chr3 110745832 110746114 -48853669 + Lx9 LINE L1 7196 7465 -179 3 1429 423 0 0 0 chr3 110746125 110746172 -48853611 + (TG)n Simple_repeat Simple_repeat 2 48 0 3 1429 461 206 0 0 chr3 110746623 110746730 -48853053 + Lx9 LINE L1 7532 7638 -6 3 1429 256 341 16 8 chr3 110747133 110747260 -48852523 - Lx8 LINE L1 -292 7181 7054 3 1429 1073 103 12 0 chr3 110748381 110748546 -48851237 + (TTTC)n Simple_repeat Simple_repeat 2 168 0 3 1429 1097 78 0 43 chr3 110748559 110748746 -48851037 + (TTCCC)n Simple_repeat Simple_repeat 2 180 0 3 1429 4280 224 104 24 chr3 110748775 110749952 -48849831 - Lx2B LINE L1 -46 7012 5655 3 1429 4945 161 9 3 chr3 110749946 110750813 -48848970 + Lx2B LINE L1 4769 5640 -237 3 1429 48 32 0 0 chr3 110751240 110751302 -48848481 + AT_rich Low_complexity Low_complexity 1 62 0 3 1429 22 0 0 0 chr3 110751771 110751793 -48847990 + AT_rich Low_complexity Low_complexity 1 22 0 3 1429 1114 261 35 49 chr3 110752262 110752363 -48847420 - RLTR20A2 LTR ERVK -1 577 492 3 1429 432 0 0 0 chr3 110752363 110752411 -48847372 + (CA)n Simple_repeat Simple_repeat 2 49 0 3 1429 1114 281 61 50 chr3 110752411 110752843 -48846940 - RLTR20A2 LTR ERVK -87 491 12 3 1429 418 331 61 0 chr3 110752982 110753130 -48846653 - RSINE1 SINE B4 -4 161 5 3 1429 259 275 43 56 chr3 110753485 110753647 -48846136 - L1MC4 LINE L1 -378 7664 7505 3 1429 428 171 9 0 chr3 110754189 110754300 -48845483 + (CA)n Simple_repeat Simple_repeat 2 113 0 3 1429 252 247 47 85 chr3 110754361 110754467 -48845316 + L1M2 LINE L1 5760 5861 -436 3 1429 495 0 0 0 chr3 110754634 110754689 -48845094 + (CA)n Simple_repeat Simple_repeat 1 55 0 3 1429 441 0 0 0 chr3 110754828 110754877 -48844906 + (TAGA)n Simple_repeat Simple_repeat 3 51 0 3 178 1780 192 50 9 chr3 110755594 110755936 -48843847 + Lx4A LINE L1 6702 7057 -1 3 1430 1473 217 93 11 chr3 110756028 110756224 -48843559 - ORR1B1 LTR MaLR 0 394 189 3 1430 301 0 68 0 chr3 110756224 110756268 -48843515 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 3 1430 1473 217 93 11 chr3 110756268 110756435 -48843348 - ORR1B1 LTR MaLR -206 188 2 3 1430 1903 81 0 0 chr3 110756720 110756967 -48842816 + L1_Mus1 LINE L1 6319 6565 -2 3 1430 3369 116 4 21 chr3 110757096 110757617 -48842166 + L1_Mus3 LINE L1 6122 6633 -5 3 1430 245 375 35 53 chr3 110757942 110758111 -48841672 + MLT1D LTR MaLR 3 168 -337 3 1430 394 363 60 20 chr3 110759480 110759730 -48840053 + RMER15 LTR ERVL 316 575 0 3 1430 28 29 0 0 chr3 110759761 110759796 -48839987 + AT_rich Low_complexity Low_complexity 1 35 0 3 1430 12720 84 11 4 chr3 110760363 110762820 -48836963 - L1Md_F2 LINE L1 -12 6570 4095 3 1430 431 307 93 72 chr3 110763786 110764077 -48835706 + RMER15-int LTR ERVL 4586 4882 -117 3 1430 318 286 19 39 chr3 110764415 110764596 -48835187 + RMER15 LTR ERVL 352 561 -14 3 1430 21 0 0 0 chr3 110764844 110764865 -48834918 + AT_rich Low_complexity Low_complexity 1 21 0 3 1430 230 0 0 32 chr3 110765417 110765448 -48834335 + (TTCA)n Simple_repeat Simple_repeat 4 33 0 3 1430 971 194 16 10 chr3 110765448 110765641 -48834142 - Lx5 LINE L1 -22 7028 6835 3 1430 32 67 0 0 chr3 110766235 110766295 -48833488 + AT_rich Low_complexity Low_complexity 1 60 0 3 1430 288 111 0 0 chr3 110766888 110766933 -48832850 + (TA)n Simple_repeat Simple_repeat 2 46 0 3 1430 5827 99 16 9 chr3 110766933 110767782 -48832001 - L1_Mus4 LINE L1 -14 6622 5768 3 1430 433 91 42 0 chr3 110767782 110767859 -48831924 + L1_Mus4 LINE L1 5466 5557 -329 3 1430 4234 68 5 12 chr3 110767859 110768428 -48831355 + L1Md_F2 LINE L1 6016 6580 -2 3 1430 1269 124 12 13 chr3 110768574 110768786 -48830997 + L1_Mus4 LINE L1 5587 5813 -367 3 1430 562 136 7 45 chr3 110769326 110769480 -48830303 + (CATATA)n Simple_repeat Simple_repeat 6 153 0 3 1430 338 311 0 36 chr3 110769480 110769590 -48830193 - Lx9 LINE L1 -749 6895 6790 3 1430 25 31 0 0 chr3 110769960 110769992 -48829791 + AT_rich Low_complexity Low_complexity 1 32 0 3 1430 234 125 0 0 chr3 110770731 110770779 -48829004 + (T)n Simple_repeat Simple_repeat 1 48 0 3 1430 180 0 0 0 chr3 110771174 110771194 -48828589 + (A)n Simple_repeat Simple_repeat 1 20 0 3 1430 283 131 0 21 chr3 110771693 110771740 -48828043 - MTE2a LTR MaLR -333 46 1 3 1430 27 49 0 0 chr3 110773464 110773505 -48826278 + AT_rich Low_complexity Low_complexity 1 41 0 3 1430 923 293 102 32 chr3 110774428 110775063 -48824720 - Lx7 LINE L1 -4 7469 6768 3 1430 21 0 0 0 chr3 110775248 110775269 -48824514 + AT_rich Low_complexity Low_complexity 1 21 0 3 1430 241 200 0 28 chr3 110775779 110775851 -48823932 + T-rich Low_complexity Low_complexity 2 71 0 3 1430 600 333 11 28 chr3 110775979 110776155 -48823628 + B4A SINE B4 30 202 -90 3 1430 307 113 16 16 chr3 110776270 110776333 -48823450 + (CA)n Simple_repeat Simple_repeat 2 64 0 3 1430 327 175 0 0 chr3 110776949 110777006 -48822777 + Lx5 LINE L1 5831 5887 -1163 3 1430 2248 214 87 11 chr3 110776994 110777242 -48822541 + Lx5 LINE L1 6479 6744 -306 3 1430 477 0 0 0 chr3 110777242 110777295 -48822488 + (CA)n Simple_repeat Simple_repeat 2 54 0 4 1430 576 29 0 0 chr3 110777295 110777364 -48822419 + (GA)n Simple_repeat Simple_repeat 2 71 0 4 1430 2248 214 87 11 chr3 110777364 110777644 -48822139 + Lx5 LINE L1 6745 7047 -3 3 1430 200 420 0 0 chr3 110777685 110777785 -48821998 - MIR3 SINE MIR -12 196 97 4 1430 313 222 13 40 chr3 110777877 110777952 -48821831 - ID4 SINE ID -10 73 1 4 1430 219 192 0 55 chr3 110778015 110778070 -48821713 + (TATATG)n Simple_repeat Simple_repeat 3 54 0 4 1430 382 274 121 12 chr3 110778558 110778724 -48821059 + Lx8 LINE L1 5804 5987 -1657 4 1430 645 321 27 38 chr3 110778859 110779147 -48820636 + Lx8 LINE L1 6271 6706 -938 4 1430 4759 67 22 2 chr3 110779278 110779903 -48819880 - L1Md_F2 LINE L1 -515 5368 4731 4 1430 4456 72 1 2 chr3 110779897 110780699 -48819084 + L1Md_F2 LINE L1 5372 6171 -411 4 1430 992 94 0 13 chr3 110780702 110780853 -48818930 + (TCCCC)n Simple_repeat Simple_repeat 4 152 0 4 1430 198 239 0 0 chr3 110780955 110781026 -48818757 + CT-rich Low_complexity Low_complexity 2 72 0 4 1430 456 19 0 0 chr3 110781050 110781103 -48818680 + (CA)n Simple_repeat Simple_repeat 1 53 0 4 1430 180 97 0 0 chr3 110781129 110781160 -48818623 + (TTTTTG)n Simple_repeat Simple_repeat 1 31 0 4 1430 249 109 0 0 chr3 110781699 110781745 -48818038 + (TA)n Simple_repeat Simple_repeat 1 46 0 4 1430 946 166 0 0 chr3 110781804 110781949 -48817834 - B1_Mus1 SINE Alu -3 145 1 4 1430 198 87 21 42 chr3 110782815 110782863 -48816920 + (TA)n Simple_repeat Simple_repeat 2 48 0 4 1430 1060 301 69 20 chr3 110783086 110783476 -48816307 - MTC LTR MaLR -12 409 1 4 1430 2478 209 24 31 chr3 110783966 110784510 -48815273 - Lx4B LINE L1 -8 7050 6511 4 1430 1466 186 11 78 chr3 110784510 110784884 -48814899 - L1_Mur2 LINE L1 -4022 1858 1510 4 1430 1638 196 42 0 chr3 110784862 110785245 -48814538 - L1_Mur2 LINE L1 -5781 1305 907 4 1430 2712 221 68 23 chr3 110785845 110786508 -48813275 - Lx5 LINE L1 -12 7038 6346 4 1430 393 22 0 0 chr3 110787402 110787448 -48812335 + (TG)n Simple_repeat Simple_repeat 1 46 0 4 1430 314 400 38 23 chr3 110788786 110788919 -48810864 - RSINE1 SINE B4 -19 146 12 4 1430 13260 176 123 92 chr3 110789514 110792654 -48807129 + Lx5 LINE L1 821 4118 -1759 4 1430 7964 45 4 2 chr3 110792654 110793636 -48806147 + L1Md_F2 LINE L1 5587 6570 -12 4 1430 13260 171 128 101 chr3 110793636 110794316 -48805467 + Lx5 LINE L1 4119 4760 -1117 4 1430 3384 28 2 2 chr3 110794316 110794712 -48805071 + MTA_Mm LTR MaLR 1 396 0 4 1430 13260 171 128 101 chr3 110794712 110795230 -48804553 + Lx5 LINE L1 4761 5294 -583 4 1430 10855 127 41 11 chr3 110795227 110797700 -48802083 + L1_Mus3 LINE L1 4088 6635 -3 4 1430 2086 115 21 36 chr3 110797712 110798099 -48801684 - MusHAL1 LINE L1 -1611 1101 721 4 1430 17736 181 20 18 chr3 110798097 110798417 -48801366 + Lx LINE L1 2283 2613 -3270 4 1430 423 0 0 0 chr3 110798417 110798464 -48801319 + (TA)n Simple_repeat Simple_repeat 1 47 0 4 1430 17736 181 20 18 chr3 110798464 110798699 -48801084 + Lx LINE L1 2614 2889 -2994 4 1430 1236 96 0 0 chr3 110798699 110798876 -48800907 + (GAAA)n Simple_repeat Simple_repeat 4 180 0 4 1430 17736 166 16 16 chr3 110798876 110802686 -48797097 + Lx LINE L1 2890 6651 -3 4 1430 213 217 0 0 chr3 110802705 110802788 -48796995 + A-rich Low_complexity Low_complexity 7 89 0 4 1430 585 209 25 50 chr3 110802788 110802805 -48796978 + ID_B1 SINE B4 68 221 0 4 1430 948 128 0 0 chr3 110802805 110802946 -48796837 + B1_Mus1 SINE Alu 8 148 0 4 1430 198 0 0 0 chr3 110802949 110802971 -48796812 + (A)n Simple_repeat Simple_repeat 1 22 0 4 1430 3164 243 92 28 chr3 110803114 110804588 -48795195 + Lx5 LINE L1 5388 7039 -11 4 1430 358 287 45 27 chr3 110806343 110806454 -48793329 + MLT1C LTR MaLR 1 113 -354 4 1430 696 299 10 20 chr3 110806544 110806574 -48793209 - B3A SINE B2 -1 197 166 4 1430 396 0 0 0 chr3 110806574 110806618 -48793165 + (TCTG)n Simple_repeat Simple_repeat 4 47 0 4 1430 696 299 10 20 chr3 110806618 110806785 -48792998 - B3A SINE B2 -33 165 2 4 1430 799 341 24 0 chr3 110806988 110807243 -48792540 + MLT1C LTR MaLR 199 459 -8 4 1430 2293 106 55 18 chr3 110808830 110809214 -48790569 + Lx3_Mus LINE L1 6604 7001 -8 4 1430 324 341 16 0 chr3 110809245 110809374 -48790409 + Lx9 LINE L1 7067 7197 -447 4 1430 278 245 126 11 chr3 110809846 110809941 -48789842 + RMER5 LTR ERV1 387 492 -42 4 1430 227 354 12 0 chr3 110809946 110810028 -48789755 + RSINE1 SINE B4 9 91 -74 4 1430 372 22 0 0 chr3 110810133 110810178 -48789605 + (CA)n Simple_repeat Simple_repeat 1 45 0 4 1430 228 320 26 0 chr3 110810810 110810888 -48788895 + ID4 SINE ID 1 80 -3 4 1430 33 85 0 0 chr3 110811247 110811329 -48788454 + AT_rich Low_complexity Low_complexity 1 82 0 4 1430 35 78 0 0 chr3 110811944 110812021 -48787762 + AT_rich Low_complexity Low_complexity 1 77 0 4 1430 948 268 87 79 chr3 110812198 110812717 -48787066 + L1MCa LINE L1 11 533 -5975 4 1430 247 291 93 44 chr3 110812854 110813059 -48786724 + L1MCa LINE L1 754 968 -5540 4 1430 25 51 0 0 chr3 110813091 110813130 -48786653 + AT_rich Low_complexity Low_complexity 1 39 0 4 1430 304 277 54 0 chr3 110813186 110813298 -48786485 + L1_Mur3 LINE L1 1746 1863 -4017 4 1430 2507 246 119 23 chr3 110813317 110814071 -48785712 + L1_Mur3 LINE L1 4071 4863 -1017 4 1430 835 42 25 8 chr3 110814071 110814190 -48785593 + (GAAAA)n Simple_repeat Simple_repeat 4 124 0 4 1430 2507 246 119 23 chr3 110814190 110814356 -48785427 + L1_Mur3 LINE L1 4864 5079 -801 4 1430 4544 88 0 8 chr3 110814375 110814993 -48784790 - L1_Mus1 LINE L1 0 6567 5955 4 1430 905 50 8 0 chr3 110816466 110816587 -48783196 + B1_Mm SINE Alu 26 147 0 4 1430 309 198 0 0 chr3 110816590 110816681 -48783102 + A-rich Low_complexity Low_complexity 1 91 0 4 1430 333 310 97 11 chr3 110817612 110817890 -48781893 + L1MCa LINE L1 4166 4468 -1853 4 1430 479 327 127 35 chr3 110818260 110818749 -48781034 + L1MCa LINE L1 4945 5478 -843 4 1430 1160 75 0 0 chr3 110818749 110818896 -48780887 + B1_Mus2 SINE Alu 1 147 0 4 1430 479 365 71 45 chr3 110818896 110819002 -48780781 + L1MCa LINE L1 5479 5578 -743 4 1430 27 29 0 0 chr3 110819753 110819787 -48779996 + AT_rich Low_complexity Low_complexity 1 34 0 4 1430 4534 82 124 1 chr3 110819787 110820449 -48779334 + L1Md_F2 LINE L1 5838 6580 -2 4 1430 240 35 0 0 chr3 110820484 110820513 -48779270 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 4 1430 200 59 29 0 chr3 110821062 110821096 -48778687 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 4 1430 1069 93 0 0 chr3 110821096 110821235 -48778548 - B1_Mm SINE Alu -8 139 1 4 1430 299 280 87 44 chr3 110821500 110821683 -48778100 + Lx7 LINE L1 5712 5902 -1794 4 1430 2761 176 32 26 chr3 110822965 110823632 -48776151 - MYSERV16_I-int LTR ERVK -1769 557 1 4 1430 1081 208 150 19 chr3 110823667 110823956 -48775827 - RLTR20A2 LTR ERVK -287 291 9 4 1430 6940 22 0 0 chr3 110823956 110824743 -48775040 + MERVL-int LTR ERVL 3897 4683 -802 4 1430 1506 221 67 11 chr3 110824760 110825089 -48774694 + MTC LTR MaLR 40 385 -36 4 1430 304 21 20 40 chr3 110825089 110825139 -48774644 + (TTTG)n Simple_repeat Simple_repeat 2 50 0 4 1430 1506 221 67 11 chr3 110825139 110825166 -48774617 + MTC LTR MaLR 386 416 -5 4 1430 318 258 0 0 chr3 110825205 110825298 -48774485 + (TAA)n Simple_repeat Simple_repeat 1 93 0 4 1430 542 15 0 15 chr3 110825788 110825856 -48773927 + (TC)n Simple_repeat Simple_repeat 2 68 0 4 1430 870 301 89 11 chr3 110825932 110826291 -48773492 - MTD LTR MaLR -2 417 31 4 1430 262 295 91 20 chr3 110826311 110826496 -48773287 - Lx8 LINE L1 -1675 5969 5772 4 1430 588 334 124 12 chr3 110826590 110826929 -48772854 + Lx8 LINE L1 6437 6813 -660 4 1430 5929 215 35 15 chr3 110827079 110829201 -48770582 - Lx5 LINE L1 -15 7035 4856 4 1430 228 333 20 0 chr3 110830683 110830785 -48768998 - L1MD3 LINE L1 -336 7659 7556 4 1430 378 0 0 0 chr3 110830969 110831011 -48768772 + (TTTA)n Simple_repeat Simple_repeat 4 45 0 4 1430 24 0 0 0 chr3 110831115 110831139 -48768644 + AT_rich Low_complexity Low_complexity 1 24 0 4 1430 254 376 30 15 chr3 110831201 110831401 -48768382 + B3 SINE B2 3 205 -11 4 1430 357 320 40 32 chr3 110831681 110831807 -48767976 - B1_Mus2 SINE Alu -20 127 1 4 1430 21 0 0 0 chr3 110831813 110831834 -48767949 + AT_rich Low_complexity Low_complexity 1 21 0 4 1430 1444 233 94 15 chr3 110832106 110832446 -48767337 - ORR1B2 LTR MaLR 0 367 1 4 1430 817 306 56 17 chr3 110832563 110833026 -48766757 - L1MC LINE L1 -3417 2729 2249 4 1430 2847 172 10 32 chr3 110833691 110834140 -48765643 + L1_Mur2 LINE L1 4680 5124 -753 4 1430 207 0 0 0 chr3 110834140 110834163 -48765620 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 4 1430 2847 172 10 32 chr3 110834163 110834309 -48765474 + L1_Mur2 LINE L1 5125 5262 -615 4 1430 3487 249 20 36 chr3 110834304 110835180 -48764603 + Lx2B LINE L1 6116 6977 -23 4 1430 340 213 0 0 chr3 110835208 110835283 -48764500 - Lx7 LINE L1 -1480 6216 6142 4 1430 260 302 0 11 chr3 110835276 110835363 -48764420 + Lx7 LINE L1 6232 6317 -1379 4 1430 2142 261 66 66 chr3 110835364 110836081 -48763702 + Lx6 LINE L1 6408 7124 -336 4 1430 315 232 20 20 chr3 110836096 110836197 -48763586 + Lx7 LINE L1 7594 7694 -2 4 1430 550 228 0 9 chr3 110836323 110836438 -48763345 - RMER5 LTR ERV1 -34 500 387 4 1430 5290 272 52 40 chr3 110836467 110837951 -48761832 - Lx7 LINE L1 -25 7671 6175 4 1430 252 120 0 0 chr3 110837951 110838001 -48761782 + (CA)n Simple_repeat Simple_repeat 1 50 0 4 1430 5290 272 52 40 chr3 110838001 110838341 -48761442 - Lx7 LINE L1 -1522 6174 5825 4 1430 515 314 0 39 chr3 110838661 110838753 -48761030 + B4 SINE B4 2 91 -201 4 1430 1320 224 105 51 chr3 110838753 110838816 -48760967 - ORR1B1 LTR MaLR 0 394 333 4 1430 285 51 0 0 chr3 110838816 110838855 -48760928 + (CA)n Simple_repeat Simple_repeat 2 40 0 4 1430 1320 224 105 51 chr3 110838855 110839163 -48760620 - ORR1B1 LTR MaLR -62 332 3 4 1430 515 314 0 39 chr3 110839163 110839252 -48760531 + B4 SINE B4 92 176 -116 4 1430 1223 233 52 17 chr3 110839592 110840025 -48759758 + MYSERV-int LTR ERVK 6114 6490 -60 4 1430 1841 178 17 9 chr3 110840026 110840371 -48759412 + RLTR15 LTR ERVK 1 348 -11 4 1430 27 29 0 0 chr3 110840661 110840695 -48759088 + AT_rich Low_complexity Low_complexity 1 34 0 4 1430 830 265 81 16 chr3 110841515 110841624 -48758159 + Lx7 LINE L1 7370 7477 -219 4 1430 225 0 0 0 chr3 110841624 110841649 -48758134 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 4 1430 830 265 81 16 chr3 110841649 110841846 -48757937 + Lx7 LINE L1 7478 7695 -1 4 1430 37140 29 1 7 chr3 110842682 110847873 -48751910 + L1Md_A LINE L1 437 5586 -297 4 1430 8199 42 1 0 chr3 110847873 110848868 -48750915 + L1Md_A LINE L1 5587 6582 0 4 1430 26 0 0 0 chr3 110848915 110848941 -48750842 + AT_rich Low_complexity Low_complexity 1 26 0 4 1430 1074 322 66 11 chr3 110849264 110849704 -48750079 + Lx8 LINE L1 6997 7460 -13 4 1430 333 0 0 0 chr3 110849745 110849782 -48750001 + (TCTA)n Simple_repeat Simple_repeat 4 40 0 4 1430 1014 187 74 62 chr3 110849839 110850096 -48749687 + Lx5 LINE L1 6779 7038 -12 4 1430 238 404 11 46 chr3 110850391 110850565 -48749218 - MER5B DNA MER1_type 0 178 11 4 1430 405 325 14 47 chr3 110851183 110851396 -48748387 - Lx8 LINE L1 -480 6993 6788 4 1430 667 267 17 28 chr3 110851525 110851706 -48748077 + ORR1D1 LTR MaLR 25 203 -171 4 1430 699 248 15 21 chr3 110851706 110851913 -48747870 + ORR1D1 LTR MaLR 156 365 -9 4 1430 227 158 0 0 chr3 110853474 110853512 -48746271 + Lx2A LINE L1 6930 6967 -41 5 1430 372 138 0 15 chr3 110853512 110853578 -48746205 + Lx2A LINE L1 6923 6987 -21 5 1430 3971 169 58 63 chr3 110853654 110854920 -48744863 - L1VL2 LINE L1 -2355 1260 9 5 1430 10327 173 10 2 chr3 110854947 110855603 -48744180 + Lx LINE L1 3966 4621 -1256 5 1430 186 43 0 0 chr3 110855603 110855626 -48744157 + (CAA)n Simple_repeat Simple_repeat 2 24 0 5 1430 10327 148 10 4 chr3 110855626 110857632 -48742151 + Lx LINE L1 4622 6654 0 5 1430 260 250 26 0 chr3 110858069 110858145 -48741638 + (CA)n Simple_repeat Simple_repeat 1 78 0 5 1430 4458 113 62 3 chr3 110858224 110859015 -48740768 - Lx3A LINE L1 -902 6079 5237 5 1430 200 34 0 33 chr3 110859015 110859045 -48740738 + (TA)n Simple_repeat Simple_repeat 2 30 0 5 1430 4458 121 62 4 chr3 110859045 110859170 -48740613 - Lx3A LINE L1 -650 5236 5115 5 1430 5171 138 38 3 chr3 110859170 110860035 -48739748 + Lx3A LINE L1 6080 6974 -7 5 1430 27 0 0 0 chr3 110860036 110860063 -48739720 + AT_rich Low_complexity Low_complexity 1 27 0 5 1430 312 335 138 14 chr3 110860108 110860550 -48739233 + L1MC LINE L1 5267 5763 -581 5 1430 567 335 21 21 chr3 110860559 110860745 -48739038 + B3 SINE B2 2 187 -29 5 1430 1430 285 59 4 chr3 110860761 110861303 -48738480 + Lx9 LINE L1 7064 7635 -9 5 1430 191 57 86 0 chr3 110861547 110861582 -48738201 + (CAAAAA)n Simple_repeat Simple_repeat 3 40 0 5 1430 2725 298 97 19 chr3 110862218 110863466 -48736317 - Lx7 LINE L1 -5 7455 6049 5 1430 758 116 70 12 chr3 110864809 110864967 -48734816 - L1_Mus2 LINE L1 -6 6576 6401 5 1430 312 340 19 0 chr3 110865631 110865734 -48734049 - Lx7 LINE L1 -382 7314 7210 5 1430 196 111 22 22 chr3 110865796 110865842 -48733941 + (TTCA)n Simple_repeat Simple_repeat 3 48 0 5 1430 355 250 144 7 chr3 110865854 110866007 -48733776 - Lx7 LINE L1 -154 7542 7369 5 1430 396 59 0 0 chr3 110866283 110866334 -48733449 + (TTTA)n Simple_repeat Simple_repeat 2 52 0 5 1430 21 0 0 0 chr3 110866431 110866452 -48733331 + AT_rich Low_complexity Low_complexity 1 21 0 5 1430 195 146 0 0 chr3 110866452 110866493 -48733290 + (GA)n Simple_repeat Simple_repeat 2 42 0 5 1430 546 16 0 0 chr3 110867137 110867200 -48732583 + (GA)n Simple_repeat Simple_repeat 2 64 0 5 1430 293 378 72 0 chr3 110868190 110868301 -48731482 - PB1D7 SINE Alu 0 120 2 5 1430 926 56 8 0 chr3 110868782 110868907 -48730876 + (TCTA)n Simple_repeat Simple_repeat 3 128 0 5 1430 43 35 0 0 chr3 110869617 110869674 -48730109 + AT_rich Low_complexity Low_complexity 1 57 0 5 1430 213 39 0 0 chr3 110871253 110871279 -48728504 + (TCTG)n Simple_repeat Simple_repeat 2 27 0 5 1430 282 152 0 0 chr3 110871280 110871339 -48728444 + (TG)n Simple_repeat Simple_repeat 2 60 0 5 1430 221 200 31 0 chr3 110871870 110871935 -48727848 + GA-rich Low_complexity Low_complexity 3 69 0 5 1430 198 383 8 50 chr3 110872603 110872724 -48727059 - MIRb SINE MIR -140 128 13 5 1430 25 0 0 0 chr3 110873296 110873321 -48726462 + AT_rich Low_complexity Low_complexity 1 25 0 5 1430 288 0 0 0 chr3 110874336 110874368 -48725415 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 5 1430 216 0 0 0 chr3 110874761 110874785 -48724998 + (T)n Simple_repeat Simple_repeat 1 24 0 5 1430 1445 234 65 127 chr3 110874834 110875371 -48724412 + RMER19C LTR ERVK 107 610 -1 5 1430 432 55 0 0 chr3 110876138 110876193 -48723590 + (TA)n Simple_repeat Simple_repeat 1 55 0 5 1430 570 290 12 36 chr3 110876393 110876561 -48723222 + RSINE1 SINE B4 2 165 0 5 1430 378 0 0 0 chr3 110876564 110876606 -48723177 + (TA)n Simple_repeat Simple_repeat 2 43 0 5 1430 373 188 0 0 chr3 110876606 110876670 -48723113 - Lx5 LINE L1 -335 6715 6652 5 1430 2154 211 127 31 chr3 110876669 110877285 -48722498 + Lx5 LINE L1 5813 6487 -563 5 1430 511 173 9 46 chr3 110877292 110877401 -48722382 - RMER10B LTR ERVL -11 387 283 5 1430 400 272 0 9 chr3 110877406 110877521 -48722262 + Lx5 LINE L1 6529 6642 -408 5 1430 334 337 124 22 chr3 110877637 110877822 -48721961 + B4 SINE B4 6 209 -83 5 1430 575 355 63 12 chr3 110879099 110879353 -48720430 - B4A SINE B4 -13 279 13 5 1430 301 320 15 62 chr3 110879772 110879902 -48719881 - RSINE1 SINE B4 -40 125 2 5 1430 22 35 0 0 chr3 110880155 110880184 -48719599 + AT_rich Low_complexity Low_complexity 1 29 0 5 1430 401 129 14 0 chr3 110880270 110880340 -48719443 + (TG)n Simple_repeat Simple_repeat 2 72 0 5 1430 642 85 0 0 chr3 110880453 110880547 -48719236 + (GA)n Simple_repeat Simple_repeat 2 95 0 5 1430 267 316 32 0 chr3 110880879 110880974 -48718809 + U6 snRNA snRNA 10 107 0 5 1430 394 388 70 86 chr3 110881515 110881983 -48717800 - MTE-int LTR MaLR -563 1017 557 5 1430 479 415 56 12 chr3 110882032 110882274 -48717509 - MTE-int LTR MaLR -1130 450 193 5 1430 4771 153 54 49 chr3 110882274 110883252 -48716531 + RLTR13C1 LTR ERVK 1 983 0 5 1430 479 415 56 12 chr3 110883252 110883436 -48716347 - MTE-int LTR MaLR -1388 192 5 5 1430 29 28 0 0 chr3 110883828 110883864 -48715919 + AT_rich Low_complexity Low_complexity 1 36 0 5 1430 265 280 10 29 chr3 110883877 110883980 -48715803 - Lx3C LINE L1 -33 6943 6843 5 1430 5747 147 20 8 chr3 110883973 110884984 -48714799 + L1_Mur1 LINE L1 4591 5613 -273 5 1430 552 347 10 55 chr3 110885038 110885239 -48714544 - B3A SINE B2 0 198 7 5 1430 486 0 0 0 chr3 110885287 110885341 -48714442 + (TG)n Simple_repeat Simple_repeat 1 54 0 5 1430 252 405 9 0 chr3 110885357 110885473 -48714310 - RSINE1 SINE B4 -41 124 8 5 1430 531 0 0 0 chr3 110886291 110886350 -48713433 + (TA)n Simple_repeat Simple_repeat 1 59 0 5 1431 327 266 82 31 chr3 110888036 110888133 -48711650 + RSINE1 SINE B4 54 155 -10 5 1431 23 78 0 0 chr3 110888138 110888189 -48711594 + AT_rich Low_complexity Low_complexity 1 51 0 5 1431 306 360 75 18 chr3 110888802 110889028 -48710755 + MLT2B4 LTR ERVL 225 463 -93 5 1431 555 346 9 0 chr3 110890402 110890613 -48709170 - Lx9 LINE L1 -188 7456 7244 5 1431 11978 169 36 18 chr3 110890626 110893681 -48706102 - Lx LINE L1 0 6654 3527 5 1431 468 272 100 12 chr3 110893679 110893839 -48705944 - Lx9 LINE L1 -390 7254 7081 5 1431 247 250 119 46 chr3 110893802 110893911 -48705872 + Lx9 LINE L1 6915 7031 -613 5 1431 1797 182 62 5 chr3 110894132 110894503 -48705280 - Lx LINE L1 0 6654 6263 5 1431 3819 92 19 0 chr3 110894612 110895133 -48704650 - L1_Mus1 LINE L1 0 6567 6037 5 1431 1232 241 100 47 chr3 110895343 110895807 -48703976 + L1_Rod LINE L1 1186 1693 -4187 5 1431 2098 139 43 126 chr3 110895807 110896244 -48703539 + RLTR9D LTR ERVK 1 401 -2 5 1431 1232 238 101 48 chr3 110896244 110896374 -48703409 + L1_Rod LINE L1 1694 1815 -4065 5 1431 2328 103 56 3 chr3 110896671 110897012 -48702771 - RLTR10D LTR ERVK 0 359 1 5 1431 23 33 0 0 chr3 110897213 110897243 -48702540 + AT_rich Low_complexity Low_complexity 1 30 0 5 1431 23 0 0 0 chr3 110898661 110898684 -48701099 + AT_rich Low_complexity Low_complexity 1 23 0 5 1431 1061 103 7 0 chr3 110899187 110899333 -48700450 + B1_Mm SINE Alu 1 147 0 5 1431 306 0 0 0 chr3 110899333 110899367 -48700416 + (A)n Simple_repeat Simple_repeat 1 34 0 5 1431 22 56 0 0 chr3 110899868 110899904 -48699879 + AT_rich Low_complexity Low_complexity 1 36 0 5 1431 478 347 25 15 chr3 110900062 110900264 -48699519 - Lx8 LINE L1 -1077 6396 6193 5 1431 465 121 0 0 chr3 110900265 110900348 -48699435 + (TC)n Simple_repeat Simple_repeat 2 84 0 5 1431 357 188 0 0 chr3 110900349 110900434 -48699349 + (TATG)n Simple_repeat Simple_repeat 2 86 0 5 1431 227 67 0 0 chr3 110900628 110900658 -48699125 - Lx8 LINE L1 -1315 6158 6129 5 1431 11244 58 3 1 chr3 110900666 110902856 -48696927 - L1Md_F2 LINE L1 -2 6580 4387 5 1431 311 295 113 65 chr3 110903268 110903453 -48696330 - RMER2 LTR ERV1 -66 501 308 5 1431 209 222 0 0 chr3 110903626 110903671 -48696112 + T-rich Low_complexity Low_complexity 1 45 0 5 1431 498 46 0 0 chr3 110903919 110903984 -48695799 + (TG)n Simple_repeat Simple_repeat 1 65 0 5 1431 473 360 8 127 chr3 110904810 110905055 -48694728 + B4 SINE B4 3 218 -74 5 1431 267 225 0 0 chr3 110905137 110905208 -48694575 + (CA)n Simple_repeat Simple_repeat 1 71 0 5 1431 1332 245 98 26 chr3 110906883 110907272 -48692511 + MTC LTR MaLR 1 417 -4 5 1431 464 356 96 40 chr3 110909086 110909335 -48690448 + LTR16B2 LTR ERVL 1 263 -199 5 1431 1772 329 53 27 chr3 110909482 110910348 -48689435 - Lx8 LINE L1 -9 7464 6576 5 1431 742 314 55 29 chr3 110910355 110910895 -48688888 - L1M3 LINE L1 -1721 4419 3833 5 1431 459 0 0 0 chr3 110911205 110911256 -48688527 + (TG)n Simple_repeat Simple_repeat 2 52 0 5 1431 237 218 0 35 chr3 110911259 110911316 -48688467 + (TATATG)n Simple_repeat Simple_repeat 5 59 0 5 1431 335 215 86 86 chr3 110912672 110912789 -48686994 - Lx9 LINE L1 -367 7277 7161 5 1431 928 215 133 13 chr3 110912753 110913068 -48686715 + Lx9 LINE L1 7289 7641 -3 5 1431 399 182 0 0 chr3 110913342 110913419 -48686364 + (TA)n Simple_repeat Simple_repeat 1 77 0 5 1431 492 195 6 13 chr3 110913830 110913986 -48685797 + GA-rich Low_complexity Low_complexity 2 156 0 5 1431 1028 116 17 6 chr3 110914085 110914299 -48685484 + MTB LTR MaLR 9 229 -178 5 1431 1892 52 0 0 chr3 110914302 110914532 -48685251 + L1Md_F2 LINE L1 5357 5586 -297 5 1431 7275 66 14 14 chr3 110914533 110915176 -48684607 + L1Md_F2 LINE L1 5588 6239 -343 5 1431 3408 23 2 2 chr3 110915176 110915572 -48684211 + MTA_Mm LTR MaLR 1 396 0 5 1431 8286 56 36 1 chr3 110915572 110916633 -48683150 + MTA_Mm-int LTR MaLR 1 1098 0 5 1431 3329 33 2 2 chr3 110916633 110917029 -48682754 + MTA_Mm LTR MaLR 1 396 0 5 1431 7275 66 14 14 chr3 110917029 110917364 -48682419 + L1Md_F2 LINE L1 6240 6566 -16 5 1431 29 0 0 0 chr3 110917364 110917393 -48682390 + AT_rich Low_complexity Low_complexity 1 29 0 5 1431 1466 92 0 0 chr3 110917752 110917947 -48681836 + MTB LTR MaLR 182 376 -24 5 1431 23 33 0 0 chr3 110919486 110919516 -48680267 + AT_rich Low_complexity Low_complexity 1 30 0 5 1431 859 49 187 0 chr3 110919518 110919641 -48680142 + B1_Mus2 SINE Alu 2 147 0 5 1431 314 75 29 29 chr3 110919641 110919710 -48680073 + (CAAA)n Simple_repeat Simple_repeat 4 72 0 5 1431 437 269 14 20 chr3 110920566 110920714 -48679069 + Lx9 LINE L1 7017 7163 -481 5 1431 258 277 44 9 chr3 110921322 110921435 -48678348 - Lx9 LINE L1 -6 7638 7522 5 1431 201 178 0 0 chr3 110922854 110922899 -48676884 + A-rich Low_complexity Low_complexity 1 45 0 5 1431 25150 132 20 13 chr3 110923385 110924764 -48675019 - L1_Mus3 LINE L1 -7 6631 5234 5 1431 459 0 0 0 chr3 110924764 110924815 -48674968 + (TCTA)n Simple_repeat Simple_repeat 4 54 0 6 1431 25150 141 13 9 chr3 110924815 110926531 -48673252 - L1_Mus3 LINE L1 -650 5233 3491 5 1431 489 34 0 0 chr3 110926531 110926590 -48673193 + (TTTC)n Simple_repeat Simple_repeat 3 61 0 6 1431 25150 141 13 9 chr3 110926590 110926839 -48672944 - L1_Mus3 LINE L1 -2393 3490 3242 5 1431 4907 48 5 0 chr3 110926839 110927447 -48672336 + L1Md_F2 LINE L1 5972 6582 0 6 1431 25150 141 13 9 chr3 110927447 110928393 -48671390 - L1_Mus3 LINE L1 -2642 3241 2309 5 1431 6149 51 10 0 chr3 110928393 110929163 -48670620 + L1Md_F2 LINE L1 5805 6582 0 6 1431 25150 141 13 9 chr3 110929163 110929867 -48669916 - L1_Mus3 LINE L1 -3575 2308 1600 5 1431 232 289 11 11 chr3 110929843 110929934 -48669849 - Lx7 LINE L1 -439 7257 7167 6 1431 2824 62 5 3 chr3 110929971 110930341 -48669442 + L1Md_F2 LINE L1 6201 6571 -11 6 1431 25 75 0 0 chr3 110931123 110931176 -48668607 + AT_rich Low_complexity Low_complexity 1 53 0 6 1431 511 121 11 70 chr3 110931484 110931670 -48668113 + (TCTCTG)n Simple_repeat Simple_repeat 2 176 0 6 1431 249 33 0 0 chr3 110931672 110931702 -48668081 + (CA)n Simple_repeat Simple_repeat 1 30 0 6 1431 397 0 0 36 chr3 110932298 110932353 -48667430 + (TTA)n Simple_repeat Simple_repeat 2 54 0 6 1431 622 221 39 8 chr3 110932787 110932915 -48666868 - B1_Mur3 SINE Alu 0 149 18 6 1431 5820 83 8 1 chr3 110932915 110933713 -48666070 + L1_Mus2 LINE L1 5763 6565 -1 6 1431 430 365 74 15 chr3 110934981 110935184 -48664599 + B3 SINE B2 2 216 0 6 1431 7769 160 41 72 chr3 110935975 110936246 -48663537 - RLTR21 LTR ERVK -9 1563 1301 6 1431 429 20 0 0 chr3 110936246 110936296 -48663487 + (CA)n Simple_repeat Simple_repeat 2 51 0 6 1431 7769 160 41 72 chr3 110936296 110937631 -48662152 - RLTR21 LTR ERVK -272 1300 7 6 1431 414 0 0 0 chr3 110937801 110937847 -48661936 + (TG)n Simple_repeat Simple_repeat 1 46 0 6 1431 393 224 65 29 chr3 110937915 110938019 -48661764 + RMER17C LTR ERVK 96 204 -206 6 1431 288 0 0 0 chr3 110938019 110938051 -48661732 + (TC)n Simple_repeat Simple_repeat 1 32 0 6 1431 393 224 65 29 chr3 110938051 110938116 -48661667 + RMER17C LTR ERVK 205 271 -139 6 1431 300 27 0 0 chr3 110938119 110938156 -48661627 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 6 1431 231 378 200 17 chr3 110938158 110938333 -48661450 - B4A SINE B4 -85 207 1 6 1431 2500 205 108 30 chr3 110938338 110938761 -48661022 - RMER19C LTR ERVK 0 611 174 6 1431 3308 48 89 0 chr3 110938761 110939197 -48660586 - IAPLTR2_Mm LTR ERVK 0 475 1 6 1431 2500 205 108 30 chr3 110939197 110939336 -48660447 - RMER19C LTR ERVK -438 173 5 6 1431 23 33 0 0 chr3 110939392 110939422 -48660361 + AT_rich Low_complexity Low_complexity 1 30 0 6 1431 316 293 8 16 chr3 110939462 110939587 -48660196 + GA-rich Low_complexity Low_complexity 3 126 0 6 1431 312 192 0 0 chr3 110939748 110939813 -48659970 + Lx LINE L1 6562 6624 -30 6 1431 198 0 0 0 chr3 110939813 110939835 -48659948 + (GAAAA)n Simple_repeat Simple_repeat 3 24 0 6 1431 272 250 0 12 chr3 110939835 110939854 -48659929 + Lx LINE L1 6974 6992 -8 6 1431 1930 195 97 31 chr3 110941122 110941567 -48658216 + Lx5 LINE L1 6220 6693 -357 6 1431 288 365 53 45 chr3 110941573 110941705 -48658078 - RMER10B LTR ERVL -10 388 256 6 1431 1411 206 12 4 chr3 110941860 110942113 -48657670 + Lx5 LINE L1 6687 6941 -109 6 1431 5276 198 9 14 chr3 110942124 110942434 -48657349 + MurERV4_19-int LTR ERVK 41 347 -5433 6 1431 2799 55 0 3 chr3 110942434 110942781 -48657002 + ORR1A1 LTR MaLR 1 346 0 6 1431 5276 198 9 14 chr3 110942781 110943454 -48656329 + MurERV4_19-int LTR ERVK 348 1019 -4761 6 1431 648 110 0 29 chr3 110943452 110943555 -48656228 - MurERV4_19-int LTR ERVK -1764 4016 3917 6 1431 627 223 8 0 chr3 110943558 110943688 -48656095 + MurERV4_19-int LTR ERVK 1027 1157 -4623 6 1431 2706 142 535 11 chr3 110943688 110943804 -48655979 + MurERV4_19-int LTR ERVK 3913 4090 -1690 6 1431 4927 131 31 65 chr3 110943804 110944738 -48655045 + RLTR13D6 LTR ERVK 1 902 0 6 1431 2706 180 2 20 chr3 110944738 110945227 -48654556 + MurERV4_19-int LTR ERVK 4091 4570 -1210 6 1431 3213 93 21 13 chr3 110945229 110945699 -48654084 - L1Md_F2 LINE L1 0 6582 6109 6 1431 3926 60 7 38 chr3 110945699 110946251 -48653532 + L1Md_F2 LINE L1 5631 6165 -417 6 1431 510 184 6 60 chr3 110946253 110946421 -48653362 - MurERV4_19-int LTR ERVK -65 5715 5557 6 1431 441 66 0 0 chr3 110946504 110946565 -48653218 + (TATG)n Simple_repeat Simple_repeat 2 62 0 6 1431 1082 196 51 0 chr3 110946655 110946869 -48652914 - MurERV4_19-int LTR ERVK -337 5443 5219 6 1431 1612 189 15 12 chr3 110947301 110947634 -48652149 - Lx LINE L1 0 6654 6321 6 1431 3002 186 52 2 chr3 110947634 110948233 -48651550 - MurERV4_19-int LTR ERVK -586 5194 4564 6 1431 17211 103 17 1 chr3 110948233 110951501 -48648282 + L1Md_F LINE L1 334 3658 -2225 6 1431 1047 94 0 0 chr3 110951503 110951641 -48648142 - L1_Mm LINE L1 -251 5632 5495 6 1431 3124 180 16 46 chr3 110951691 110952321 -48647462 + RMER19C LTR ERVK 1 611 0 6 1431 380 338 121 40 chr3 110952324 110953043 -48646740 - L1MC LINE L1 -2567 3579 2811 6 1431 2193 269 52 25 chr3 110953084 110953655 -48646128 - Lx5 LINE L1 -4 7046 6460 6 1431 11035 68 3 4 chr3 110953753 110955922 -48643861 - L1Md_F2 LINE L1 -8 6574 4410 6 1431 2112 74 0 0 chr3 110955919 110956204 -48643579 + L1Md_F2 LINE L1 4164 4448 -1435 6 1431 734 277 0 0 chr3 110956203 110956380 -48643403 - Lx5 LINE L1 -584 6466 6290 6 1431 1741 259 57 9 chr3 110956379 110956834 -48642949 + Lx5 LINE L1 5794 6270 -780 6 1431 230 268 0 0 chr3 110957207 110957263 -48642520 - MLT2B2 LTR ERVL -446 69 14 6 1431 214 378 33 0 chr3 110957314 110957404 -48642379 + PB1D10 SINE Alu 1 93 -24 6 1431 316 368 9 0 chr3 110957334 110957448 -48642335 + ID_B1 SINE B4 105 219 -5 6 1431 220 350 49 12 chr3 110958593 110958674 -48641109 - B1F1 SINE Alu -56 93 10 6 1431 21 36 0 0 chr3 110958838 110958866 -48640917 + AT_rich Low_complexity Low_complexity 1 28 0 6 1431 23 0 0 0 chr3 110958898 110958921 -48640862 + AT_rich Low_complexity Low_complexity 1 23 0 6 1431 1606 156 19 4 chr3 110959243 110959513 -48640270 - Lx3A LINE L1 -3 6978 6705 6 1431 2570 75 69 0 chr3 110960288 110960649 -48639134 + L1_Mus3 LINE L1 6253 6638 0 6 1431 2481 104 23 103 chr3 110961317 110961755 -48638028 - RLTR9D LTR ERVK 0 403 1 6 1431 26 82 0 0 chr3 110961913 110961974 -48637809 + AT_rich Low_complexity Low_complexity 1 61 0 6 1431 5626 117 82 8 chr3 110962668 110963567 -48636216 + Lx LINE L1 5686 6651 -3 6 1431 414 0 0 0 chr3 110963570 110963616 -48636167 + (GA)n Simple_repeat Simple_repeat 2 47 0 6 1431 366 163 0 32 chr3 110963918 110964005 -48635778 + L1_Mus3 LINE L1 6544 6627 -11 6 1431 219 69 0 0 chr3 110964005 110964034 -48635749 + (ATG)n Simple_repeat Simple_repeat 2 30 0 6 1431 1106 36 7 0 chr3 110964751 110964890 -48634893 + (TTC)n Simple_repeat Simple_repeat 2 141 0 6 1431 2078 188 152 28 chr3 110965009 110965468 -48634315 - RMER20A LTR ERVK 0 516 1 6 1431 429 257 46 84 chr3 110965468 110965626 -48634157 - ORR1D1 LTR MaLR -75 299 150 6 1431 286 443 56 12 chr3 110965666 110965826 -48633957 - MER45C DNA Tip100 -458 495 329 6 1431 585 209 6 164 chr3 110967877 110967959 -48631824 + Lx9 LINE L1 6951 7027 -617 6 1431 5321 70 0 0 chr3 110967959 110968643 -48631140 + L1Md_T LINE L1 5899 6582 0 6 1431 585 209 6 164 chr3 110968643 110968743 -48631040 + Lx9 LINE L1 7028 7104 -540 6 1431 301 148 164 0 chr3 110968739 110968800 -48630983 + Lx9 LINE L1 7288 7358 -286 6 1431 317 198 12 0 chr3 110968818 110968904 -48630879 + (CA)n Simple_repeat Simple_repeat 2 88 0 6 1431 184 222 28 0 chr3 110968903 110968975 -48630808 + (TA)n Simple_repeat Simple_repeat 2 75 0 6 1431 479 239 154 0 chr3 110968975 110969163 -48630620 + Lx9 LINE L1 7419 7635 -9 6 1431 876 20 0 0 chr3 110970372 110970474 -48629309 + (TA)n Simple_repeat Simple_repeat 1 102 0 6 1431 258 32 0 0 chr3 110970474 110970504 -48629279 + (GA)n Simple_repeat Simple_repeat 2 32 0 6 1431 7206 156 26 12 chr3 110970658 110972803 -48626980 - Lx LINE L1 -8 6646 4472 6 1431 7783 118 34 13 chr3 110972794 110974771 -48625012 - L1VL2 LINE L1 -1362 2253 234 6 1431 23 33 0 0 chr3 110974781 110974811 -48624972 + AT_rich Low_complexity Low_complexity 1 30 0 6 1431 1850 108 11 0 chr3 110974811 110975080 -48624703 - L1_Mus1 LINE L1 0 6567 6296 6 1431 1559 242 155 18 chr3 110975098 110975587 -48624196 + RLTR12A LTR ERVK 1 556 -12 6 1431 1245 264 131 20 chr3 110975592 110976485 -48623298 - Lx6 LINE L1 -951 6745 5651 6 1431 395 312 0 9 chr3 110976647 110976760 -48623023 + B3A SINE B2 5 116 -82 6 1431 522 0 0 0 chr3 110976797 110976855 -48622928 + (CA)n Simple_repeat Simple_repeat 1 58 0 6 1431 251 279 166 14 chr3 110977041 110977252 -48622531 + L1M2 LINE L1 4090 4332 -1811 6 1431 3125 248 52 54 chr3 110977350 110978272 -48621511 - Lx2B LINE L1 -19 6981 6086 6 1431 3376 173 47 17 chr3 110978252 110979067 -48620716 + Lx2B LINE L1 5192 6038 -962 6 1431 502 289 82 20 chr3 110979061 110979364 -48620419 + L1M2 LINE L1 5329 5650 -662 6 1431 394 321 83 17 chr3 110979909 110980177 -48619606 + MTEa LTR MaLR 64 379 0 6 1431 21 0 0 0 chr3 110980217 110980238 -48619545 + AT_rich Low_complexity Low_complexity 1 21 0 6 1431 21 0 0 0 chr3 110980555 110980576 -48619207 + AT_rich Low_complexity Low_complexity 1 21 0 6 1431 450 0 0 0 chr3 110981062 110981112 -48618671 + (TTTA)n Simple_repeat Simple_repeat 4 53 0 6 1431 425 250 108 0 chr3 110981113 110981233 -48618550 - Lx3C LINE L1 -11 6965 6833 6 1431 633 199 0 0 chr3 110981233 110981399 -48618384 + (TATATG)n Simple_repeat Simple_repeat 2 167 0 6 1431 6062 161 20 6 chr3 110981405 110982661 -48617122 - Lx3C LINE L1 -242 6734 5464 6 1431 272 181 0 65 chr3 110983740 110983817 -48615966 + Lx9 LINE L1 7507 7578 -66 6 1431 489 34 0 0 chr3 110983826 110983885 -48615898 + (GAAAA)n Simple_repeat Simple_repeat 2 60 0 6 1431 4029 178 73 26 chr3 110983891 110984704 -48615079 + Lx2 LINE L1 6146 6996 -1 6 1431 22 0 0 0 chr3 110984983 110985005 -48614778 + AT_rich Low_complexity Low_complexity 1 22 0 6 1431 200 210 32 16 chr3 110985918 110985981 -48613802 + (TA)n Simple_repeat Simple_repeat 1 64 0 6 1431 310 338 49 0 chr3 110986152 110986294 -48613489 + Tigger7 DNA MER2_type 2077 2225 -266 6 1431 232 363 21 21 chr3 110986398 110986491 -48613292 - Lx8 LINE L1 -162 7311 7219 6 1431 439 242 196 48 chr3 110986492 110986722 -48613061 - RLTR10A LTR ERVK -13 398 135 6 1431 1823 208 16 26 chr3 110986750 110987199 -48612584 - IAP-d-int LTR ERVK -202 7042 6522 6 1431 2049 324 46 44 chr3 110987327 110989217 -48610566 - IAP-d-int LTR ERVK -1462 5080 3224 6 1431 267 232 48 12 chr3 110989222 110989305 -48610478 - IAP-d-int LTR ERVK -3611 2556 2471 6 1431 345 222 61 53 chr3 110989611 110989725 -48610058 - RLTR10-int LTR ERVK -1554 433 319 6 1431 489 235 193 53 chr3 110989741 110989984 -48609799 - RLTR10A LTR ERVK 0 411 135 6 1431 309 271 47 85 chr3 110990017 110990146 -48609637 - Lx8 LINE L1 -244 7229 7106 6 1431 277 363 0 68 chr3 110990169 110990252 -48609531 + Lx8 LINE L1 6689 6764 -709 6 1431 1062 126 0 0 chr3 110990252 110990419 -48609364 + (TTC)n Simple_repeat Simple_repeat 3 169 0 6 1431 234 0 0 0 chr3 110990419 110990444 -48609339 + (TTA)n Simple_repeat Simple_repeat 1 26 0 6 1431 277 363 0 68 chr3 110990444 110990566 -48609217 + Lx8 LINE L1 6765 6880 -593 6 1431 3699 216 37 66 chr3 110990570 110991569 -48608214 + RLTR25A LTR ERVK 8 1019 -9 6 1431 372 297 102 0 chr3 110992484 110992602 -48607181 - B1_Mur1 SINE Alu -6 143 14 6 1431 204 67 0 0 chr3 110992872 110992902 -48606881 + (CAAAAA)n Simple_repeat Simple_repeat 1 30 0 6 1431 276 100 0 0 chr3 110993378 110993418 -48606365 + (TCC)n Simple_repeat Simple_repeat 3 42 0 6 1431 222 150 0 0 chr3 110993419 110993459 -48606324 + (CAT)n Simple_repeat Simple_repeat 3 42 0 6 1431 1258 19 0 6 chr3 110993468 110993626 -48606157 - L1Md_F3 LINE L1 -15 6569 6413 6 1431 187 140 20 20 chr3 110993895 110993946 -48605837 + (TTTG)n Simple_repeat Simple_repeat 3 53 0 7 1431 1105 321 159 16 chr3 110994360 110995053 -48604730 - Lx8 LINE L1 -97 7376 6585 7 1431 767 351 15 0 chr3 110996040 110996308 -48603475 + Lx6 LINE L1 6144 6415 -1045 7 1431 2179 251 115 23 chr3 110996317 110997295 -48602488 + Lx6 LINE L1 5503 6578 -472 7 1431 1168 171 4 44 chr3 110997304 110997555 -48602228 + Lx5 LINE L1 5780 6020 -1030 7 1431 569 256 78 5 chr3 110997564 110997756 -48602027 - B3 SINE B2 -7 209 4 7 1431 24 32 0 0 chr3 110998034 110998065 -48601718 + AT_rich Low_complexity Low_complexity 1 31 0 7 1431 186 358 113 13 chr3 110998559 110998709 -48601074 - L2c LINE L2 -312 3075 2911 7 1431 321 205 69 35 chr3 110998924 110999040 -48600743 + MER2 DNA MER2_type 92 211 -134 7 1431 1111 87 23 0 chr3 110999631 110999803 -48599980 + (TTCC)n Simple_repeat Simple_repeat 1 176 0 7 1431 5321 112 7 55 chr3 111000384 111001271 -48598512 + L1_Mm LINE L1 4022 4865 -1018 1 1431 1489 148 41 11 chr3 111001271 111001537 -48598246 - RLTR10E LTR ERVK -37 274 1 2 1431 419 269 0 11 chr3 111001954 111002048 -48597735 + ID_B1 SINE B4 124 216 -8 3 1431 289 252 76 57 chr3 111002048 111002059 -48597724 + B1_Mur1 SINE Alu 43 149 0 4 1431 183 162 0 0 chr3 111002457 111002494 -48597289 + T-rich Low_complexity Low_complexity 4 40 0 5 1431 276 352 23 31 chr3 111002664 111002793 -48596990 - B4 SINE B4 -157 135 8 6 1431 306 0 0 0 chr3 111003220 111003254 -48596529 + (TC)n Simple_repeat Simple_repeat 1 34 0 7 1431 291 28 0 0 chr3 111003254 111003289 -48596494 + (CA)n Simple_repeat Simple_repeat 1 36 0 8 1431 317 187 19 26 chr3 111003354 111003508 -48596275 + (CAGAGA)n Simple_repeat Simple_repeat 2 154 0 9 1431 279 0 0 0 chr3 111004385 111004416 -48595367 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1 1431 1935 166 30 0 chr3 111006099 111006437 -48593346 + Lx3B LINE L1 6626 6973 0 1 1431 24 0 0 0 chr3 111006437 111006461 -48593322 + AT_rich Low_complexity Low_complexity 1 24 0 1 1431 4752 65 0 2 chr3 111006510 111007113 -48592670 - L1_Mus1 LINE L1 0 6567 5966 1 1431 22 35 0 0 chr3 111007377 111007406 -48592377 + AT_rich Low_complexity Low_complexity 1 29 0 1 1431 192 40 0 0 chr3 111007659 111007684 -48592099 + (CA)n Simple_repeat Simple_repeat 2 26 0 1 1431 2091 219 53 5 chr3 111008427 111009029 -48590754 + Lx7 LINE L1 1435 2065 -3815 1 1431 288 253 0 0 chr3 111009075 111009166 -48590617 + (CCA)n Simple_repeat Simple_repeat 1 91 0 1 1431 697 210 58 62 chr3 111009167 111009375 -48590408 + Lx7 LINE L1 2058 2264 -3616 1 1431 239 82 81 16 chr3 111009375 111009437 -48590346 + Lx2B LINE L1 6854 6919 -81 1 1431 1224 130 0 49 chr3 111009444 111009670 -48590113 + L1Md_A LINE L1 6366 6580 -2 1 1431 475 219 70 9 chr3 111009685 111009800 -48589983 + Lx7 LINE L1 5103 5224 -656 1 1431 310 287 61 34 chr3 111009839 111009987 -48589796 + Lx7 LINE L1 5901 6052 -1644 1 1431 3914 286 37 78 chr3 111010005 111010526 -48589257 + Lx7 LINE L1 5997 6505 -1191 1 1431 619 113 0 9 chr3 111010526 111010633 -48589150 + Lx2 LINE L1 6892 6997 0 2 1431 3914 286 37 78 chr3 111010633 111011879 -48587904 + Lx7 LINE L1 6506 7692 -4 1 1431 894 106 0 0 chr3 111012604 111012736 -48587047 + (TC)n Simple_repeat Simple_repeat 1 132 0 2 1431 270 0 0 0 chr3 111012747 111012777 -48587006 + (CCTCG)n Simple_repeat Simple_repeat 2 31 0 2 1431 247 115 32 16 chr3 111012802 111012864 -48586919 + (TCTCTG)n Simple_repeat Simple_repeat 4 66 0 2 1431 442 278 111 25 chr3 111013091 111013371 -48586412 - MER99 DNA hAT? -357 474 171 2 1431 1118 69 7 0 chr3 111013421 111013566 -48586217 - B1_Mm SINE Alu 0 147 2 2 1431 638 292 31 14 chr3 111014077 111014299 -48585484 - Lx7 LINE L1 -1392 6304 6079 2 1431 836 123 19 6 chr3 111014362 111014518 -48585265 + (GA)n Simple_repeat Simple_repeat 2 159 0 2 1431 1874 199 61 9 chr3 111014518 111015022 -48584761 - Lx7 LINE L1 -1704 5992 5469 2 1431 1695 212 48 54 chr3 111014928 111015039 -48584744 + L1_Mur3 LINE L1 4905 5009 -871 2 1431 1393 96 5 0 chr3 111015039 111015236 -48584547 + L1_Mus1 LINE L1 6369 6566 -1 2 1431 1695 212 48 54 chr3 111015236 111015682 -48584101 + L1_Mur3 LINE L1 5010 5459 -421 2 1431 253 353 58 32 chr3 111015780 111015935 -48583848 - RSINE1 SINE B4 -2 163 5 3 1431 235 307 11 121 chr3 111016193 111016367 -48583416 - Charlie5 DNA MER1_type -749 1875 1721 3 1431 2177 219 102 58 chr3 111016429 111016511 -48583272 - RMER6C LTR ERVK 0 690 614 3 1431 3050 68 0 0 chr3 111016511 111016893 -48582890 - L1Md_F2 LINE L1 -12 6570 6189 3 1431 2177 219 102 58 chr3 111016893 111017469 -48582314 - RMER6C LTR ERVK -77 613 3 3 1431 463 195 23 11 chr3 111017469 111017556 -48582227 - ORR1B1 LTR MaLR -306 88 1 3 178 4169 236 65 108 chr3 111017556 111018380 -48581403 - ORR1B1-int LTR MaLR -106 1403 536 3 1432 441 0 0 0 chr3 111018380 111018429 -48581354 + (TA)n Simple_repeat Simple_repeat 2 50 0 3 1432 4169 236 65 108 chr3 111018429 111018579 -48581204 - ORR1B1-int LTR MaLR -974 535 401 3 1432 2336 175 9 13 chr3 111018579 111019030 -48580753 + Lx3B LINE L1 6521 6969 -4 3 1432 4169 236 65 108 chr3 111019030 111019145 -48580638 - ORR1B1-int LTR MaLR -1109 400 385 3 1432 1251 128 70 25 chr3 111019145 111019386 -48580397 + Lx LINE L1 6397 6648 -6 3 1432 4169 236 65 108 chr3 111019386 111019760 -48580023 - ORR1B1-int LTR MaLR -1125 384 3 3 1432 1817 207 42 26 chr3 111019760 111020138 -48579645 - ORR1B1 LTR MaLR 0 394 11 3 1432 459 0 0 0 chr3 111020138 111020189 -48579594 + (CA)n Simple_repeat Simple_repeat 2 52 0 3 1432 467 132 11 0 chr3 111020189 111020280 -48579503 + (GA)n Simple_repeat Simple_repeat 1 92 0 3 1432 215 31 0 30 chr3 111021161 111021194 -48578589 + (TAA)n Simple_repeat Simple_repeat 2 33 0 4 1432 423 52 0 0 chr3 111022360 111022418 -48577365 + (CAAAA)n Simple_repeat Simple_repeat 3 60 0 4 1432 225 273 15 0 chr3 111022422 111022488 -48577295 - Lx8 LINE L1 -527 6946 6880 4 1432 320 235 125 56 chr3 111022647 111022791 -48576992 + Lx8 LINE L1 7107 7260 -213 4 1432 504 0 0 0 chr3 111022870 111022926 -48576857 + (TA)n Simple_repeat Simple_repeat 1 56 0 4 1432 2749 175 4 10 chr3 111022930 111023443 -48576340 + L1_Mur1 LINE L1 4637 5146 -740 4 1432 1107 191 175 0 chr3 111023448 111023694 -48576089 - RMER6D LTR ERVK -431 289 1 4 1432 261 224 26 114 chr3 111023833 111024060 -48575723 + RMER17D2 LTR ERVK 320 526 -283 4 1432 211 113 19 19 chr3 111025523 111025577 -48574206 + T-rich Low_complexity Low_complexity 2 55 0 4 1432 207 0 0 0 chr3 111026628 111026651 -48573132 + (TCTCTG)n Simple_repeat Simple_repeat 2 24 0 4 1432 200 261 0 11 chr3 111026654 111026747 -48573036 + (CATA)n Simple_repeat Simple_repeat 1 92 0 5 1432 240 157 84 0 chr3 111026800 111026883 -48572900 + (TA)n Simple_repeat Simple_repeat 2 91 0 5 1432 6576 221 26 28 chr3 111026920 111027360 -48572423 - Lx5 LINE L1 -3 7047 6601 5 1432 711 107 207 0 chr3 111027360 111027481 -48572302 - B1_Mm SINE Alu 0 147 2 5 1432 2558 27 0 0 chr3 111027491 111027787 -48571996 - L1Md_A LINE L1 -1 6581 6286 5 1432 8730 206 73 47 chr3 111027787 111028970 -48570813 - Lx5 LINE L1 -455 6595 5363 5 1432 4349 147 38 9 chr3 111028970 111029734 -48570049 - Lx3B LINE L1 0 6973 6188 5 1432 8730 182 145 75 chr3 111029734 111029746 -48570037 - Lx5 LINE L1 -515 5362 5356 5 1432 3775 37 4 4 chr3 111029746 111030210 -48569573 - L1Md_F3 LINE L1 -1 6583 6120 5 1432 8730 182 145 75 chr3 111030210 111032360 -48567423 - Lx5 LINE L1 -522 5355 3062 5 1432 693 0 0 0 chr3 111032361 111032438 -48567345 + (TTC)n Simple_repeat Simple_repeat 3 79 0 5 1432 216 182 0 0 chr3 111032438 111032482 -48567301 + (CAT)n Simple_repeat Simple_repeat 2 45 0 5 1432 414 160 139 25 chr3 111032617 111032739 -48567044 - Lx5 LINE L1 -2786 3091 2956 5 1432 632 222 110 11 chr3 111032749 111032940 -48566843 - Lx5 LINE L1 -3605 2272 2063 5 1432 2249 157 0 0 chr3 111032948 111033305 -48566478 + MT2B2 LTR ERVL 224 580 -4 5 1432 225 176 44 0 chr3 111033669 111033737 -48566046 + (TTATA)n Simple_repeat Simple_repeat 5 75 0 6 1432 24 32 0 0 chr3 111033902 111033933 -48565850 + AT_rich Low_complexity Low_complexity 1 31 0 6 1432 21 0 0 0 chr3 111034528 111034549 -48565234 + AT_rich Low_complexity Low_complexity 1 21 0 6 1432 254 211 0 17 chr3 111034799 111034857 -48564926 + Lx8 LINE L1 7038 7094 -379 6 1432 29 0 0 0 chr3 111035064 111035093 -48564690 + AT_rich Low_complexity Low_complexity 1 29 0 6 1432 293 109 18 0 chr3 111035182 111035237 -48564546 + (TAGA)n Simple_repeat Simple_repeat 2 57 0 6 1432 1184 214 191 6 chr3 111036066 111036390 -48563393 + ORR1C2 LTR MaLR 1 384 0 6 1432 961 296 44 17 chr3 111036396 111036692 -48563091 + ORR1C2-int LTR MaLR 7 310 -1199 6 1432 240 351 54 67 chr3 111036876 111037099 -48562684 + RMER20B LTR ERVK 200 419 -208 6 1432 1722 280 70 46 chr3 111037417 111038020 -48561763 + ORR1C2-int LTR MaLR 382 998 -372 6 1432 2036 148 36 20 chr3 111038037 111038395 -48561388 - Lx LINE L1 -25 6629 6266 6 1432 726 67 0 0 chr3 111038414 111038519 -48561264 + (TAGA)n Simple_repeat Simple_repeat 1 105 0 6 1432 884 220 78 0 chr3 111038519 111038710 -48561073 + ORR1C2 LTR MaLR 179 384 0 6 1432 194 160 20 0 chr3 111038981 111039031 -48560752 + (CA)n Simple_repeat Simple_repeat 2 52 0 7 1432 1007 144 25 15 chr3 111039236 111039433 -48560350 + L1_Mus4 LINE L1 6436 6634 -2 7 1432 225 94 0 0 chr3 111039608 111039640 -48560143 + (A)n Simple_repeat Simple_repeat 1 32 0 7 1432 372 269 60 39 chr3 111039726 111040033 -48559750 - Lx7 LINE L1 -53 7643 7254 7 1432 1696 71 5 0 chr3 111040143 111040367 -48559416 - L1_Mus2 LINE L1 0 6566 6342 7 1432 379 83 0 0 chr3 111040367 111040415 -48559368 + L1_Mus2 LINE L1 6298 6345 -221 7 1432 690 122 0 0 chr3 111040492 111040599 -48559184 + (TTTC)n Simple_repeat Simple_repeat 3 109 0 7 1432 1696 114 0 0 chr3 111040764 111041001 -48558782 - L1_Mm LINE L1 -187 5696 5460 7 1432 612 277 24 30 chr3 111041107 111041271 -48558512 + RLTR18B LTR ERVK 6 168 -344 7 1432 360 260 0 13 chr3 111041265 111041343 -48558440 + RLTR18B LTR ERVK 67 143 -369 7 1432 3119 62 18 0 chr3 111041343 111041732 -48558051 + MTA_Mm LTR MaLR 1 396 0 7 1432 5134 98 16 5 chr3 111041732 111042559 -48557224 + MTA_Mm-int LTR MaLR 3 883 -215 7 1432 765 87 304 0 chr3 111042553 111042691 -48557092 + MTA_Mm LTR MaLR 217 396 0 8 1432 22 0 0 0 chr3 111042785 111042807 -48556976 + AT_rich Low_complexity Low_complexity 1 22 0 8 1432 280 209 15 15 chr3 111043703 111043771 -48556012 - MLT1A1 LTR MaLR -7 401 334 8 1432 13504 189 38 110 chr3 111044091 111047177 -48552606 - L1_Mur2 LINE L1 -257 5620 2873 8 1432 294 95 0 0 chr3 111047177 111047219 -48552564 + (ATTG)n Simple_repeat Simple_repeat 2 43 0 8 1432 13504 189 38 110 chr3 111047219 111048017 -48551766 - L1_Mur2 LINE L1 -3005 2872 2086 8 1432 261 0 0 0 chr3 111048017 111048046 -48551737 + (TG)n Simple_repeat Simple_repeat 2 30 0 8 1432 13504 189 38 110 chr3 111048046 111048420 -48551363 - L1_Mur2 LINE L1 -3792 2085 1671 8 1432 2887 189 26 2 chr3 111048419 111048961 -48550822 - L1_Mur2 LINE L1 -6039 1047 493 8 1432 655 151 151 0 chr3 111048965 111049104 -48550679 - L1_Mur2 LINE L1 -6344 368 209 8 1432 210 71 0 0 chr3 111049113 111049141 -48550642 + (T)n Simple_repeat Simple_repeat 1 28 0 8 1432 504 120 0 42 chr3 111049142 111049165 -48550618 - L1Md_T LINE L1 -608 5974 5955 8 1432 4132 33 0 0 chr3 111049165 111049649 -48550134 - L1Md_T LINE L1 0 6582 6099 8 1432 567 56 0 0 chr3 111049649 111049721 -48550062 - L1Md_T LINE L1 -628 5954 5883 8 1432 286 214 0 0 chr3 111049721 111049777 -48550006 - RMER6B LTR ERVK -398 63 8 9 1432 1783 187 46 38 chr3 111050738 111051110 -48548673 - Lx2 LINE L1 0 6997 6623 9 1432 4038 195 28 11 chr3 111051533 111052346 -48547437 - Lx2B LINE L1 -82 6918 6092 9 1432 1501 152 0 0 chr3 111052348 111052584 -48547199 + L1_Mur1 LINE L1 5339 5574 -312 9 1432 605 284 155 6 chr3 111052611 111053137 -48546646 - Lx9 LINE L1 -1 7643 7041 9 1432 1471 162 111 15 chr3 111053420 111053745 -48546038 - L1_Mur2 LINE L1 0 5877 5522 9 1432 3747 261 94 18 chr3 111053750 111054529 -48545254 + Lx5 LINE L1 5896 6735 -315 9 1432 351 0 0 0 chr3 111054529 111054568 -48545215 + (CA)n Simple_repeat Simple_repeat 2 40 0 9 1432 3747 261 94 18 chr3 111054568 111054851 -48544932 + Lx5 LINE L1 6736 7039 -11 9 1432 208 216 13 39 chr3 111055002 111055079 -48544704 + CT-rich Low_complexity Low_complexity 4 78 0 9 1432 314 355 52 17 chr3 111056331 111056503 -48543280 - MIR SINE MIR -70 192 15 9 1432 495 311 17 57 chr3 111057133 111057310 -48542473 + B3A SINE B2 14 183 -15 1 1432 186 167 0 0 chr3 111057310 111057346 -48542437 + (CA)n Simple_repeat Simple_repeat 2 37 0 1 1432 39213 30 1 6 chr3 111059012 111065052 -48534731 - L1Md_A LINE L1 0 6582 586 1 1432 413 173 12 12 chr3 111065104 111065186 -48534597 - ORR1B2 LTR MaLR -5 362 281 1 1432 37957 30 0 1 chr3 111065189 111071580 -48528203 - L1Md_T LINE L1 0 6585 101 1 1432 1096 239 71 21 chr3 111071580 111071862 -48527921 - ORR1B2 LTR MaLR -71 296 1 1 1432 1591 191 79 6 chr3 111072695 111073037 -48526746 + ORR1B2 LTR MaLR 1 367 0 1 1432 2742 223 45 171 chr3 111073375 111074328 -48525455 - RMER21B LTR ERV1 -9 833 1 1 1432 786 230 70 50 chr3 111074476 111074677 -48525106 - ORR1C2 LTR MaLR -2 382 178 1 1432 368 36 54 0 chr3 111074720 111074776 -48525007 + (CAAAAA)n Simple_repeat Simple_repeat 2 60 0 1 1432 278 324 9 28 chr3 111074795 111074903 -48524880 - ORR1C2 LTR MaLR -269 109 4 1 1432 1532 345 43 35 chr3 111074911 111075807 -48523976 + Lx8 LINE L1 6383 7286 -187 1 1432 1052 134 0 11 chr3 111075856 111076037 -48523746 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 1 1432 225 125 30 30 chr3 111076038 111076104 -48523679 + GA-rich Low_complexity Low_complexity 4 69 0 1 1432 662 0 13 0 chr3 111076876 111076954 -48522829 + (TC)n Simple_repeat Simple_repeat 2 80 0 1 1432 216 0 0 0 chr3 111079594 111079618 -48520165 + (T)n Simple_repeat Simple_repeat 1 24 0 1 1432 21 0 0 0 chr3 111079971 111079992 -48519791 + AT_rich Low_complexity Low_complexity 1 21 0 1 1432 21 36 0 0 chr3 111081024 111081052 -48518731 + AT_rich Low_complexity Low_complexity 1 28 0 1 1432 226 352 16 54 chr3 111081439 111081568 -48518215 + L1M4 LINE L1 89 212 -6330 1 1432 5092 141 42 8 chr3 111081618 111082265 -48517518 - Lx LINE L1 -133 6521 5849 1 1432 2806 102 18 0 chr3 111082265 111082658 -48517125 - MTB LTR MaLR 0 400 1 1 1432 5092 141 42 8 chr3 111082658 111082847 -48516936 - Lx LINE L1 -806 5848 5657 1 1432 22 35 0 0 chr3 111082951 111082980 -48516803 + AT_rich Low_complexity Low_complexity 1 29 0 1 1432 333 0 0 0 chr3 111083358 111083395 -48516388 + (TC)n Simple_repeat Simple_repeat 2 38 0 1 1432 5539 72 35 17 chr3 111083401 111084172 -48515611 - L1Md_F2 LINE L1 0 6582 5798 1 1432 2329 65 3 0 chr3 111084172 111084463 -48515320 + L1Md_F2 LINE L1 5519 5810 -73 1 1432 20299 176 27 12 chr3 111084456 111087553 -48512230 - Lx LINE L1 -10 6644 3487 1 1432 219 36 0 0 chr3 111087553 111087581 -48512202 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 1 1432 20299 185 24 16 chr3 111087581 111089486 -48510297 - Lx LINE L1 -2397 3486 1579 1 1432 3937 54 18 0 chr3 111089490 111089992 -48509791 - L1Md_F2 LINE L1 -1 6581 6071 1 1432 4498 49 2 0 chr3 111089992 111090544 -48509239 - L1_Mm LINE L1 -87 5796 5244 1 1432 4752 80 3 5 chr3 111090534 111091178 -48508605 + L1_Mm LINE L1 4581 5223 -660 1 1432 4402 109 54 0 chr3 111091179 111091584 -48508199 - MusHAL1 LINE L1 -2323 1030 600 1 1432 240 35 0 0 chr3 111091584 111091613 -48508170 + (TG)n Simple_repeat Simple_repeat 2 30 0 1 1432 4402 117 52 0 chr3 111091613 111092157 -48507626 - MusHAL1 LINE L1 -2755 599 37 1 1432 315 289 25 34 chr3 111092176 111092294 -48507489 + Lx9 LINE L1 5849 5965 -1679 1 1432 7453 64 6 9 chr3 111094713 111096101 -48503682 - L1Md_F2 LINE L1 -14 6568 5214 1 1432 29 28 0 0 chr3 111096418 111096454 -48503329 + AT_rich Low_complexity Low_complexity 1 36 0 1 1432 383 326 126 63 chr3 111097142 111097348 -48502435 - MER76 LTR ERVL -442 249 31 1 1432 385 370 65 44 chr3 111097384 111097862 -48501921 - L1ME2 LINE L1 -310 5854 5367 1 1432 25 31 0 0 chr3 111098602 111098634 -48501149 + AT_rich Low_complexity Low_complexity 1 32 0 1 1432 3015 76 0 8 chr3 111099602 111100001 -48499782 + MTA_Mm LTR MaLR 1 396 0 1 1432 2681 134 45 2 chr3 111100394 111100841 -48498942 + Lx LINE L1 6183 6648 -6 1 1432 372 378 75 6 chr3 111100996 111101169 -48498614 + LTR78 LTR ERV1 183 367 -937 1 1432 312 27 0 0 chr3 111102724 111102761 -48497022 + (TG)n Simple_repeat Simple_repeat 2 38 0 1 1432 447 318 35 25 chr3 111103199 111103399 -48496384 + RMER15 LTR ERVL 337 538 -37 1 1432 497 253 4 185 chr3 111104136 111104412 -48495371 - RMER1C Other Other -3 1339 1114 1 1432 451 380 75 61 chr3 111104508 111104802 -48494981 - RMER1C Other Other -476 866 569 1 1432 3322 158 12 2 chr3 111105065 111105636 -48494147 - Lx2 LINE L1 -8 6989 6413 1 1432 281 139 0 0 chr3 111106428 111106471 -48493312 - RMER30 DNA MER1_type -151 51 9 1 1432 3466 69 25 37 chr3 111106615 111107096 -48492687 - MT2C_Mm LTR ERVL 0 475 1 1 1432 37 76 0 0 chr3 111107754 111107833 -48491950 + AT_rich Low_complexity Low_complexity 1 79 0 1 1432 345 162 0 86 chr3 111107902 111107915 -48491868 - ID_B1 SINE B4 -71 153 83 1 1432 420 65 0 46 chr3 111107915 111107980 -48491803 - B1_Mus2 SINE Alu -84 63 2 1 1432 417 227 162 9 chr3 111108142 111108364 -48491419 - Lx9 LINE L1 -1 7643 7388 1 1432 22 0 0 0 chr3 111108565 111108587 -48491196 + AT_rich Low_complexity Low_complexity 1 22 0 1 1432 10744 169 23 18 chr3 111108960 111110190 -48489593 - L1_Mm LINE L1 -1683 4200 2965 1 1432 282 29 0 0 chr3 111110190 111110225 -48489558 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1 1432 1105 70 0 7 chr3 111110225 111110370 -48489413 - B1_Mus1 SINE Alu -3 145 2 1 1432 10744 169 23 18 chr3 111110370 111111236 -48488547 - L1_Mm LINE L1 -2919 2964 2093 1 1432 998 146 26 5 chr3 111111236 111111429 -48488354 + L1_Mus3 LINE L1 6442 6638 0 1 1432 348 314 47 29 chr3 111111567 111111845 -48487938 + L1MA4 LINE L1 5587 5869 -431 1 1432 1707 223 56 194 chr3 111111850 111111864 -48487919 - RMER19C LTR ERVK -29 582 573 1 1432 5186 75 1 14 chr3 111111864 111112570 -48487213 - L1Md_F2 LINE L1 -12 6570 5874 1 1432 1707 223 56 194 chr3 111112570 111113229 -48486554 - RMER19C LTR ERVK -39 572 2 1 1432 948 279 29 36 chr3 111113392 111113701 -48486082 + Lx2B LINE L1 6693 6999 -1 1 1432 324 0 0 0 chr3 111113961 111113997 -48485786 + (TG)n Simple_repeat Simple_repeat 2 37 0 1 1432 348 355 47 22 chr3 111114172 111114494 -48485289 - L1MC1 LINE L1 -60 6273 5944 1 1432 282 29 0 0 chr3 111114980 111115015 -48484768 + (CA)n Simple_repeat Simple_repeat 2 36 0 1 1432 198 0 0 0 chr3 111115015 111115036 -48484747 + (TA)n Simple_repeat Simple_repeat 2 23 0 1 1432 547 177 24 6 chr3 111115402 111115567 -48484216 + (TA)n Simple_repeat Simple_repeat 1 168 0 1 1432 499 338 81 51 chr3 111116145 111116479 -48483304 + MTE2a LTR MaLR 31 374 -5 1 1432 315 299 78 89 chr3 111116539 111116915 -48482868 + ORR1A3-int LTR MaLR 951 1236 -727 1 1432 1530 275 49 34 chr3 111116963 111117155 -48482628 + L1_Rod LINE L1 3677 3866 -1981 1 1432 4098 52 0 4 chr3 111117155 111117671 -48482112 - L1Md_F2 LINE L1 0 6582 6069 1 1432 1530 275 49 34 chr3 111117671 111118126 -48481657 + L1_Rod LINE L1 3867 4334 -1513 1 1432 770 284 39 14 chr3 111118136 111118343 -48481440 - MTC LTR MaLR -1 420 209 1 1432 4228 193 17 50 chr3 111118381 111119417 -48480366 + L1_Mur2 LINE L1 3367 4368 -1509 1 1432 7125 110 10 4 chr3 111119391 111120597 -48479186 + L1_Mus3 LINE L1 5423 6635 -3 1 1432 458 75 15 0 chr3 111120597 111120664 -48479119 + (GGAA)n Simple_repeat Simple_repeat 1 68 0 1 1432 3106 181 5 0 chr3 111120664 111121239 -48478544 + L1_Mur2 LINE L1 4323 4900 -977 1 1432 1204 289 34 58 chr3 111121239 111121735 -48478048 + Lx5 LINE L1 6567 7050 0 1 1432 474 254 106 47 chr3 111121754 111122010 -48477773 - Lx7 LINE L1 -7 7689 7419 1 1432 6706 171 16 4 chr3 111122018 111123276 -48476507 + L1_Mur2 LINE L1 4126 5398 -479 1 1432 2968 85 2 0 chr3 111123289 111123688 -48476095 + L1_Mus1 LINE L1 6164 6563 -4 1 1432 273 57 0 0 chr3 111126225 111126260 -48473523 + (CA)n Simple_repeat Simple_repeat 2 36 0 1 1432 596 14 14 0 chr3 111127813 111127886 -48471897 + (TC)n Simple_repeat Simple_repeat 2 75 0 1 1432 436 331 33 44 chr3 111127904 111128018 -48471765 - B3A SINE B2 -17 199 85 1 1432 2234 72 28 21 chr3 111128018 111128343 -48471440 + IAPLTR2b LTR ERVK 1 327 0 1 1432 436 325 30 42 chr3 111128343 111128429 -48471354 - B3A SINE B2 -112 86 2 1 1432 262 325 15 31 chr3 111130216 111130346 -48469437 - ERVL-E-int LTR ERVL -3964 1703 1576 1 1432 286 254 84 0 chr3 111130987 111131058 -48468725 + ID_B1 SINE B4 142 218 -6 1 1432 212 156 156 0 chr3 111131018 111131063 -48468720 + PB1D10 SINE Alu 65 116 -1 1 1432 869 79 0 8 chr3 111131182 111131310 -48468473 + (TG)n Simple_repeat Simple_repeat 2 128 0 1 1432 741 361 6 39 chr3 111131330 111131641 -48468142 - ORR1D2 LTR MaLR -69 301 1 1 1432 2438 228 96 52 chr3 111134935 111135625 -48464158 + RMER6D LTR ERVK 1 720 0 1 1432 353 339 32 48 chr3 111135999 111136247 -48463536 - L1MC4 LINE L1 -902 7140 6897 1 1432 350 320 0 0 chr3 111137374 111137474 -48462309 - MER34 LTR ERV1 -320 222 123 1 1432 996 250 43 19 chr3 111137478 111137800 -48461983 - Lx9 LINE L1 -5 7639 7310 1 1432 1135 324 54 44 chr3 111137923 111138537 -48461246 - Lx8 LINE L1 -7 7466 6847 1 1432 497 306 21 16 chr3 111138575 111138764 -48461019 + Lx8 LINE L1 6648 6837 -636 1 1432 24 0 0 0 chr3 111139873 111139897 -48459886 + AT_rich Low_complexity Low_complexity 1 24 0 1 1432 813 251 38 10 chr3 111139972 111140181 -48459602 - Lx9 LINE L1 -935 6709 6495 1 1432 934 274 39 18 chr3 111140472 111140803 -48458980 + Lx9 LINE L1 6697 7034 -610 1 1432 366 308 0 19 chr3 111141918 111142024 -48457759 + B3 SINE B2 2 105 -111 1 1432 432 0 0 0 chr3 111142038 111142086 -48457697 + (CA)n Simple_repeat Simple_repeat 2 49 0 1 1432 28 29 0 0 chr3 111142464 111142499 -48457284 + AT_rich Low_complexity Low_complexity 1 35 0 1 1432 257 318 45 0 chr3 111142723 111142833 -48456950 - L1M2 LINE L1 -788 5524 5410 1 1432 1050 97 0 0 chr3 111142835 111142980 -48456803 - B1_Mm SINE Alu 0 147 3 1 1432 330 375 88 15 chr3 111143024 111143433 -48456350 - L1M2 LINE L1 -769 5374 4936 1 1432 324 306 75 51 chr3 111143504 111143838 -48455945 - L1M2 LINE L1 -1355 4788 4447 1 1432 690 327 34 41 chr3 111143911 111143966 -48455817 - B4A SINE B4 0 292 245 1 1432 2474 206 125 23 chr3 111143966 111144616 -48455167 - RMER6D LTR ERVK -4 716 1 1 1432 690 327 34 41 chr3 111144616 111144853 -48454930 - B4A SINE B4 -48 244 2 1 1432 516 59 0 0 chr3 111144870 111144938 -48454845 + (TA)n Simple_repeat Simple_repeat 2 69 0 1 1432 25 0 0 28 chr3 111145388 111145411 -48454372 + AT_rich Low_complexity Low_complexity 1 23 0 1 1432 4414 204 20 18 chr3 111145411 111146360 -48453423 - Lx3C LINE L1 -2 6974 6024 2 1432 25 0 0 28 chr3 111146360 111146372 -48453411 + AT_rich Low_complexity Low_complexity 1 12 0 2 1432 1016 209 38 9 chr3 111146500 111146713 -48453070 + URR1B DNA MER1_type 1 219 -6 2 1432 22 0 0 0 chr3 111146759 111146781 -48453002 + AT_rich Low_complexity Low_complexity 1 22 0 2 1432 360 0 0 0 chr3 111147306 111147346 -48452437 + (TAA)n Simple_repeat Simple_repeat 3 42 0 2 1432 1284 214 106 11 chr3 111147913 111148290 -48451493 + Lx9 LINE L1 7218 7630 -14 2 1432 864 240 18 5 chr3 111148290 111148512 -48451271 - URR1B DNA MER1_type 0 225 1 2 1433 1039 204 22 9 chr3 111149121 111149344 -48450439 + Lx2B LINE L1 6475 6700 -300 2 1433 1301 184 25 25 chr3 111149331 111149615 -48450168 - Lx5 LINE L1 -1073 5977 5694 2 1433 779 248 21 66 chr3 111149616 111149949 -48449834 - Lx7 LINE L1 -145 7551 7234 2 1433 450 0 0 0 chr3 111150523 111150573 -48449210 + (TC)n Simple_repeat Simple_repeat 1 50 0 2 1433 426 69 0 0 chr3 111150573 111150631 -48449152 + (TA)n Simple_repeat Simple_repeat 2 59 0 2 1433 283 74 0 36 chr3 111150658 111150714 -48449069 - Lx LINE L1 -2 6652 6599 2 1433 5034 115 24 0 chr3 111150705 111151461 -48448322 - L1_Mus3 LINE L1 -130 6508 5735 2 1433 6520 144 9 1 chr3 111151453 111152130 -48447653 + L1_Mm LINE L1 4678 5362 -521 2 1433 396 0 0 0 chr3 111152130 111152174 -48447609 + (TA)n Simple_repeat Simple_repeat 2 45 0 2 1433 6520 144 9 1 chr3 111152174 111152547 -48447236 + L1_Mm LINE L1 5363 5736 -147 2 1433 279 0 0 0 chr3 111152655 111152686 -48447097 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2 1433 226 217 70 28 chr3 111152694 111152765 -48447018 - MTA_Mm LTR MaLR -9 387 314 2 1433 892 85 93 0 chr3 111152807 111152936 -48446847 + B1_Mus1 SINE Alu 2 142 -6 2 1433 1234 277 68 12 chr3 111152963 111153299 -48446484 - MTC LTR MaLR -31 390 36 2 1433 1022 97 0 0 chr3 111153299 111153444 -48446339 + B1_Mm SINE Alu 1 145 -2 2 1433 227 31 31 0 chr3 111153445 111153477 -48446306 + (GAAAA)n Simple_repeat Simple_repeat 3 35 0 2 1433 884 239 73 19 chr3 111153532 111153792 -48445991 - Lx5 LINE L1 0 7050 6777 2 1433 351 0 0 0 chr3 111154293 111154332 -48445451 + (TG)n Simple_repeat Simple_repeat 2 40 0 2 1433 518 355 100 20 chr3 111154360 111154610 -48445173 - B4A SINE B4 -8 284 15 2 1433 1237 86 17 6 chr3 111154653 111154828 -48444955 - B2_Mm2 SINE B2 -17 178 2 2 1433 21 0 0 0 chr3 111155224 111155245 -48444538 + AT_rich Low_complexity Low_complexity 1 21 0 2 1433 2253 186 4 44 chr3 111155245 111155727 -48444056 - Lx4A LINE L1 -1 7057 6595 2 1433 450 230 91 20 chr3 111155727 111155905 -48443878 + Lx3C LINE L1 6798 6997 0 2 1433 2226 184 66 7 chr3 111155909 111156347 -48443436 - Lx4A LINE L1 -453 6605 6142 2 1433 303 318 35 35 chr3 111156587 111156701 -48443082 - MLT1A0 LTR MaLR -1 364 251 2 1433 204 330 9 28 chr3 111156759 111156865 -48442918 + G-rich Low_complexity Low_complexity 6 109 0 2 1433 669 134 7 27 chr3 111157833 111157979 -48441804 + (TCTA)n Simple_repeat Simple_repeat 4 146 0 2 1433 406 309 72 16 chr3 111158091 111158285 -48441498 + B3 SINE B2 5 209 -7 2 1433 43 20 0 0 chr3 111158285 111158335 -48441448 + AT_rich Low_complexity Low_complexity 1 50 0 2 1433 186 316 85 93 chr3 111158437 111158566 -48441217 - L3 LINE CR1 -948 3541 3414 2 1433 573 335 101 6 chr3 111158676 111158994 -48440789 - Lx8 LINE L1 -16 7457 7110 2 1433 732 270 107 14 chr3 111158991 111159320 -48440463 - Lx2B LINE L1 -127 6873 6256 2 1433 1664 171 0 0 chr3 111159317 111159598 -48440185 + Lx4B LINE L1 5747 6027 -1031 2 1433 572 348 67 10 chr3 111159832 111160131 -48439652 - Lx8 LINE L1 -609 6864 6549 2 1433 260 323 62 10 chr3 111161047 111161144 -48438639 + MLT2B2 LTR ERVL 391 492 -70 2 1433 264 186 0 0 chr3 111161145 111161204 -48438579 + (CA)n Simple_repeat Simple_repeat 1 59 0 2 1433 34 0 0 0 chr3 111161218 111161252 -48438531 + AT_rich Low_complexity Low_complexity 1 34 0 2 1433 411 145 0 0 chr3 111161813 111161882 -48437901 - Lx4B LINE L1 -710 6348 6280 2 1433 231 375 70 8 chr3 111161888 111162017 -48437766 - B1F1 SINE Alu -9 140 4 2 1433 564 116 0 0 chr3 111162037 111162123 -48437660 + (GGGAGA)n Simple_repeat Simple_repeat 6 91 0 2 1433 26 30 0 0 chr3 111162433 111162466 -48437317 + AT_rich Low_complexity Low_complexity 1 33 0 2 1433 275 300 48 28 chr3 111162668 111162922 -48436861 + L1MA7 LINE L1 4885 5138 -1002 2 1433 715 351 75 30 chr3 111162980 111163514 -48436269 + Lx8 LINE L1 6691 7248 -225 2 1433 328 346 101 8 chr3 111163715 111163983 -48435800 + L1MA7 LINE L1 5097 5389 -754 2 1433 354 333 139 18 chr3 111164862 111165201 -48434582 + L1MA7 LINE L1 5678 6057 -234 2 1433 1433 272 39 5 chr3 111165249 111165630 -48434153 - MTD LTR MaLR -25 394 1 2 1433 25 0 0 0 chr3 111165731 111165756 -48434027 + AT_rich Low_complexity Low_complexity 1 25 0 2 1433 1507 275 115 37 chr3 111165897 111166378 -48433405 + Lx7 LINE L1 6902 7390 -306 2 1433 1526 144 7 18 chr3 111166378 111166653 -48433130 - Lx2A1 LINE L1 -10 6998 6727 2 1433 1507 268 120 30 chr3 111166653 111166706 -48433077 + Lx7 LINE L1 7391 7471 -225 2 1433 426 20 0 0 chr3 111166706 111166757 -48433026 + (TG)n Simple_repeat Simple_repeat 2 52 0 2 1433 1507 268 120 30 chr3 111166757 111166944 -48432839 + Lx7 LINE L1 7472 7691 -5 2 1433 224 122 24 0 chr3 111166974 111167015 -48432768 + (TAGA)n Simple_repeat Simple_repeat 1 42 0 2 1433 659 349 45 23 chr3 111167113 111167465 -48432318 - Lx8 LINE L1 -763 6710 6351 2 1433 2766 112 7 2 chr3 111168133 111168544 -48431239 - Lx4A LINE L1 -948 6110 5698 2 1433 4492 176 88 8 chr3 111168570 111168966 -48430817 + Lx4A LINE L1 6084 6491 -567 2 1433 1510 82 32 5 chr3 111168966 111169187 -48430596 - L1_Mus2 LINE L1 0 6566 6340 2 1433 4492 176 88 8 chr3 111169187 111169670 -48430113 + Lx4A LINE L1 6492 7032 -26 2 1433 417 109 0 0 chr3 111169677 111169741 -48430042 + (CTAAA)n Simple_repeat Simple_repeat 2 65 0 2 1433 297 51 0 0 chr3 111169861 111169900 -48429883 + (TG)n Simple_repeat Simple_repeat 2 40 0 2 1433 28 0 0 0 chr3 111170348 111170376 -48429407 + AT_rich Low_complexity Low_complexity 1 28 0 2 1433 198 103 0 0 chr3 111170847 111170876 -48428907 + (T)n Simple_repeat Simple_repeat 1 29 0 2 1433 243 47 16 131 chr3 111172080 111172202 -48427581 + A-rich Low_complexity Low_complexity 1 108 0 2 1433 1230 48 0 0 chr3 111172206 111172353 -48427430 + B1_Mus1 SINE Alu 1 147 -1 2 1433 207 0 0 0 chr3 111172355 111172378 -48427405 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2 1433 257 172 11 75 chr3 111172381 111172475 -48427308 + A-rich Low_complexity Low_complexity 4 91 0 2 1433 183 129 0 0 chr3 111172883 111172914 -48426869 + (TA)n Simple_repeat Simple_repeat 1 31 0 2 1433 382 153 0 96 chr3 111174180 111174274 -48425509 + Lx2 LINE L1 6912 6996 -1 2 1433 2006 244 43 20 chr3 111174359 111174869 -48424914 + RLTR11A2 LTR ERVK 6 527 0 2 1433 237 209 0 0 chr3 111175254 111175321 -48424462 + (CATA)n Simple_repeat Simple_repeat 3 69 0 2 1433 282 195 0 0 chr3 111176678 111176755 -48423028 + GA-rich Low_complexity Low_complexity 1 77 0 2 1433 861 53 0 0 chr3 111176815 111176929 -48422854 + B1_Mm SINE Alu 34 147 0 2 1433 33 0 0 0 chr3 111176929 111176962 -48422821 + AT_rich Low_complexity Low_complexity 1 33 0 2 1433 598 191 9 0 chr3 111177650 111177765 -48422018 + B1_Mus1 SINE Alu 32 147 -1 2 1433 1080 106 77 11 chr3 111178263 111178445 -48421338 + B2_Mm2 SINE B2 2 195 0 2 1433 1283 98 11 0 chr3 111178551 111178735 -48421048 - B2_Mm1t SINE B2 -7 186 1 2 1433 310 325 78 23 chr3 111181515 111181644 -48418139 - B1F2 SINE Alu -1 148 13 2 1433 492 306 122 48 chr3 111181663 111181934 -48417849 - RMER15 LTR ERVL -2 573 283 2 1433 229 312 94 34 chr3 111181947 111182096 -48417687 - RMER15 LTR ERVL -416 159 2 2 1433 4081 133 9 58 chr3 111182408 111183144 -48416639 - Lx2A1 LINE L1 -4 7004 6305 2 1433 251 125 234 0 chr3 111183145 111183209 -48416574 + Lx2A1 LINE L1 6201 6279 -729 2 1433 354 80 0 0 chr3 111183349 111183399 -48416384 + (TAG)n Simple_repeat Simple_repeat 1 50 0 2 1433 204 40 0 0 chr3 111183543 111183568 -48416215 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 2 1433 21 0 0 0 chr3 111183618 111183639 -48416144 + AT_rich Low_complexity Low_complexity 1 21 0 2 1433 515 294 50 22 chr3 111183958 111184139 -48415644 + MLT1C LTR MaLR 282 467 0 2 1433 4625 114 4 35 chr3 111184416 111185126 -48414657 - Lx2 LINE L1 -4 6993 6306 2 1433 4300 129 45 5 chr3 111185126 111185898 -48413885 + Lx2 LINE L1 5513 6316 -681 2 1433 447 45 0 15 chr3 111185979 111186047 -48413736 - L1_Mus2 LINE L1 0 6566 6500 2 1433 773 227 68 0 chr3 111186367 111186574 -48413209 + URR1A DNA MER1_type 5 225 -1 2 1433 495 0 0 0 chr3 111187144 111187204 -48412579 + ORR1A0 LTR MaLR 1 60 -286 2 1433 1151 67 0 0 chr3 111187216 111187365 -48412418 + L1_Mus1 LINE L1 5864 6012 -555 2 1433 5177 33 38 0 chr3 111187365 111187994 -48411789 + L1Md_F3 LINE L1 5920 6572 -12 2 1433 243 88 0 0 chr3 111188015 111188049 -48411734 + (A)n Simple_repeat Simple_repeat 1 34 0 2 1433 4336 68 2 0 chr3 111188049 111188595 -48411188 + L1_Mus1 LINE L1 6021 6567 0 2 1433 314 350 48 36 chr3 111188856 111189022 -48410761 + L1MC LINE L1 5494 5661 -683 2 1433 22 0 0 0 chr3 111189607 111189629 -48410154 + AT_rich Low_complexity Low_complexity 1 22 0 2 1433 392 317 7 7 chr3 111189781 111189924 -48409859 + ORR1D1 LTR MaLR 16 158 -216 2 1433 476 341 97 75 chr3 111189978 111190688 -48409095 + L1M2 LINE L1 4577 5302 -841 2 1433 229 191 0 0 chr3 111190688 111190735 -48409048 + GA-rich Low_complexity Low_complexity 1 47 0 2 1433 24 85 0 0 chr3 111191017 111191076 -48408707 + AT_rich Low_complexity Low_complexity 1 59 0 2 1433 221 180 0 39 chr3 111191264 111191316 -48408467 + G-rich Low_complexity Low_complexity 4 53 0 2 1433 893 128 7 0 chr3 111191316 111191464 -48408319 + (GA)n Simple_repeat Simple_repeat 1 149 0 2 1433 5118 254 45 39 chr3 111191540 111193137 -48406646 - Lx6 LINE L1 -162 7534 5664 2 1433 3196 205 35 42 chr3 111193144 111194051 -48405732 - L1_Mur3 LINE L1 -1472 4408 3508 2 1433 26 0 0 0 chr3 111194051 111194077 -48405706 + AT_rich Low_complexity Low_complexity 1 26 0 2 1433 1236 96 0 0 chr3 111194103 111194280 -48405503 + (TTTC)n Simple_repeat Simple_repeat 3 179 0 3 1433 555 75 0 41 chr3 111194280 111194377 -48405406 + (TTCC)n Simple_repeat Simple_repeat 2 94 0 3 1433 1538 189 88 88 chr3 111194406 111194597 -48405186 + ORR1B2 LTR MaLR 1 194 -173 3 1433 1382 72 0 0 chr3 111194597 111194777 -48405006 - L1_Mus1 LINE L1 -2 6565 6386 3 1433 1538 189 88 88 chr3 111194777 111194950 -48404833 + ORR1B2 LTR MaLR 195 365 -2 3 1433 1725 215 33 37 chr3 111194968 111195453 -48404330 + ORR1B2-int LTR MaLR 34 528 -1435 3 1433 696 140 0 26 chr3 111195456 111195573 -48404210 - L1_Mur1 LINE L1 -1334 4552 4439 3 1433 704 160 0 85 chr3 111195572 111195736 -48404047 + L1_Mur1 LINE L1 4550 4699 -1187 3 1433 2683 248 75 34 chr3 111195736 111195756 -48404027 + ORR1B2-int LTR MaLR 535 549 -821 3 1433 1402 93 8 34 chr3 111195756 111195990 -48403793 + L1_Mus3 LINE L1 6411 6638 0 3 1433 2683 248 75 34 chr3 111195990 111196071 -48403712 + ORR1B2-int LTR MaLR 550 634 -736 3 1433 517 232 31 31 chr3 111196071 111196200 -48403583 + B1_Mus2 SINE Alu 2 130 -17 3 1433 3191 192 64 23 chr3 111196200 111196899 -48402884 + ORR1B2-int LTR MaLR 635 1508 -1 3 1433 1686 207 49 26 chr3 111196906 111197253 -48402530 + ORR1B2 LTR MaLR 11 365 -2 3 1433 325 312 58 44 chr3 111197262 111197487 -48402296 + L1MA4A LINE L1 5388 5659 -632 3 1433 267 301 39 31 chr3 111197625 111197752 -48402031 + L1MA4A LINE L1 5804 5931 -372 3 1433 548 165 10 0 chr3 111198563 111198666 -48401117 + Lx3A LINE L1 6868 6971 -10 3 1433 267 304 38 22 chr3 111199444 111199629 -48400154 - L1_Mur3 LINE L1 -849 5031 4844 3 1433 339 287 78 42 chr3 111199709 111200015 -48399768 + L1MA4 LINE L1 5612 5928 -372 3 1433 281 273 61 0 chr3 111201272 111201338 -48398445 + RSINE1 SINE B4 57 126 -39 3 1433 393 22 0 0 chr3 111201340 111201386 -48398397 + (CA)n Simple_repeat Simple_repeat 1 46 0 3 1433 234 116 0 0 chr3 111201564 111201607 -48398176 + (TA)n Simple_repeat Simple_repeat 1 43 0 3 1433 334 279 169 29 chr3 111201822 111202029 -48397754 - L1MC3 LINE L1 -7 7778 7543 3 1433 414 120 0 0 chr3 111202311 111202386 -48397397 + (GA)n Simple_repeat Simple_repeat 1 75 0 3 1433 604 295 45 5 chr3 111202386 111202587 -48397196 - B3 SINE B2 -5 211 3 3 1433 24 0 0 0 chr3 111203339 111203363 -48396420 + AT_rich Low_complexity Low_complexity 1 24 0 3 1433 534 315 0 0 chr3 111203367 111203510 -48396273 - B1_Mur4 SINE Alu -5 145 3 3 1433 45 0 0 0 chr3 111204176 111204221 -48395562 + AT_rich Low_complexity Low_complexity 1 45 0 3 1433 5278 120 73 9 chr3 111204665 111205517 -48394266 + RMER17A2 LTR ERVK 1 906 0 3 1433 1140 64 18 0 chr3 111205562 111205733 -48394050 + (GGAA)n Simple_repeat Simple_repeat 1 174 0 3 1433 829 129 23 6 chr3 111205733 111205905 -48393878 + GA-rich Low_complexity Low_complexity 1 175 0 3 1433 245 316 129 97 chr3 111205905 111206122 -48393661 + MTD LTR MaLR 196 419 0 3 1433 556 342 35 32 chr3 111206231 111206603 -48393180 + Lx9 LINE L1 6697 7069 -575 3 1433 231 36 0 0 chr3 111206636 111206664 -48393119 + (CA)n Simple_repeat Simple_repeat 2 29 0 3 1433 6625 180 12 19 chr3 111206742 111208172 -48391611 + Lx2B LINE L1 5363 6779 -221 3 1433 4955 99 87 1 chr3 111208494 111209294 -48390489 + L1_Mus3 LINE L1 5532 6369 -269 3 1433 2307 139 40 23 chr3 111209294 111209691 -48390092 - RLTR9E LTR ERVK 0 409 6 3 1433 1418 110 13 9 chr3 111209708 111209938 -48389845 + L1_Mus3 LINE L1 6403 6633 -5 3 1433 626 315 45 33 chr3 111210130 111210465 -48389318 + MYSERV6-int LTR ERVK 678 1016 -7943 3 1433 622 148 61 0 chr3 111210718 111210833 -48388950 - B2_Mm2 SINE B2 0 195 74 3 1433 309 214 0 0 chr3 111210845 111210929 -48388854 + Lx LINE L1 6569 6652 -2 3 1433 5697 216 52 33 chr3 111210983 111212466 -48387317 + MYSERV6-int LTR ERVK 1624 3134 -5825 3 1433 299 274 107 20 chr3 111212466 111212557 -48387226 - RMER6C LTR ERVK -300 456 356 3 1433 405 0 0 0 chr3 111212557 111212602 -48387181 + (TC)n Simple_repeat Simple_repeat 1 45 0 3 1433 1055 201 49 60 chr3 111212602 111212875 -48386908 - RMER6C LTR ERVK -401 355 4 3 1433 1503 285 84 21 chr3 111212976 111213489 -48386294 - Lx6 LINE L1 -4 7456 6912 3 1433 336 209 112 0 chr3 111213494 111213628 -48386155 - L1_Mur3 LINE L1 -6413 1299 1151 3 1433 375 358 67 12 chr3 111213642 111213806 -48385977 - B3A SINE B2 -22 176 4 3 1433 21 36 0 0 chr3 111213806 111213834 -48385949 + AT_rich Low_complexity Low_complexity 1 28 0 3 1433 21 0 0 0 chr3 111213889 111213910 -48385873 + AT_rich Low_complexity Low_complexity 1 21 0 3 1433 447 114 0 25 chr3 111214071 111214152 -48385631 + L1Md_F3 LINE L1 6504 6582 -2 3 1433 23 33 0 0 chr3 111214661 111214691 -48385092 + AT_rich Low_complexity Low_complexity 1 30 0 3 1433 26 64 0 0 chr3 111214993 111215040 -48384743 + AT_rich Low_complexity Low_complexity 1 47 0 3 1433 645 328 128 18 chr3 111215235 111215570 -48384213 + MER31A LTR ERV1 62 433 -52 3 1433 386 242 11 0 chr3 111215918 111216009 -48383774 - MIR SINE MIR -40 222 131 3 1433 2860 131 99 0 chr3 111216463 111216937 -48382846 + Lx3_Mus LINE L1 6086 6606 -403 3 1433 478 158 8 34 chr3 111216937 111217047 -48382736 + Lx3_Mus LINE L1 6858 6966 -15 3 1433 405 0 0 0 chr3 111217047 111217092 -48382691 + (TAAA)n Simple_repeat Simple_repeat 1 45 0 3 1433 207 0 0 0 chr3 111217407 111217430 -48382353 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 3 1433 1352 35 12 0 chr3 111217520 111217693 -48382090 + (TTTC)n Simple_repeat Simple_repeat 2 176 0 3 1433 1275 185 70 4 chr3 111217708 111217979 -48381804 - Lx LINE L1 0 6654 6366 3 1433 3964 188 105 7 chr3 111217977 111218878 -48380905 - L1_Mm LINE L1 0 5883 4894 3 1433 4529 138 15 4 chr3 111219518 111220237 -48379546 - Lx3A LINE L1 -22 6959 6233 3 1433 564 29 0 0 chr3 111220721 111220791 -48378992 + (TTTA)n Simple_repeat Simple_repeat 2 71 0 3 1433 21555 87 2 8 chr3 111220791 111224490 -48375293 - L1Md_F2 LINE L1 -34 6548 2875 3 1433 282 106 0 0 chr3 111224492 111224539 -48375244 + (TTTC)n Simple_repeat Simple_repeat 2 48 0 3 1433 580 287 86 43 chr3 111225225 111225480 -48374303 + ORR1E LTR MaLR 35 300 -59 3 1433 1633 152 113 24 chr3 111225627 111225963 -48373820 + ORR1B2 LTR MaLR 1 366 -1 3 1433 1002 133 154 0 chr3 111225982 111226177 -48373606 - URR1A DNA MER1_type -1 225 1 3 1433 852 214 146 56 chr3 111226235 111226503 -48373280 - B4 SINE B4 0 292 1 3 1433 668 246 78 0 chr3 111226625 111226767 -48373016 - RSINE1 SINE B4 -2 163 11 3 1433 1093 70 7 0 chr3 111226801 111226944 -48372839 - B1_Mus1 SINE Alu 0 148 5 3 1433 2526 68 12 0 chr3 111227287 111227623 -48372160 - L1Md_A LINE L1 0 6582 6243 3 1433 8924 107 127 2 chr3 111227624 111230229 -48369554 - L1Md_F LINE L1 -2999 2884 98 3 1433 201 175 0 0 chr3 111230350 111230390 -48369393 + (TATATG)n Simple_repeat Simple_repeat 1 40 0 3 1433 2088 294 48 74 chr3 111230636 111231444 -48368339 - RMER1C Other Other -2 1340 554 3 1433 459 266 8 24 chr3 111231790 111231917 -48367866 + ORR1E LTR MaLR 297 421 0 3 1433 647 275 156 44 chr3 111231920 111232491 -48367292 + L1_Rod LINE L1 4901 5535 -312 3 1433 697 258 48 0 chr3 111232501 111232687 -48367096 + Lx9 LINE L1 6533 6727 -917 3 1433 273 306 159 40 chr3 111232711 111232759 -48367024 - CYRA11_Mm Unknown Y-chromosome -241 376 223 3 1433 534 235 23 8 chr3 111232759 111232892 -48366891 + URR1B DNA MER1_type 91 225 0 3 1433 273 306 159 40 chr3 111232892 111232912 -48366871 - CYRA11_Mm Unknown Y-chromosome -241 222 152 3 1433 771 311 126 34 chr3 111232917 111233722 -48366061 + Lx9 LINE L1 6759 7637 -7 3 1433 182 0 0 97 chr3 111233935 111233966 -48365817 + (TTTAG)n Simple_repeat Simple_repeat 3 30 0 3 1433 1010 101 7 0 chr3 111234533 111234671 -48365112 - B1_Mus1 SINE Alu -9 139 1 3 1433 1249 91 11 0 chr3 111234686 111234861 -48364922 - L1_Mus1 LINE L1 -3 6564 6388 3 1433 1585 161 141 6 chr3 111235464 111235783 -48364000 - MTC LTR MaLR -52 369 8 3 1433 3986 185 39 21 chr3 111235976 111236781 -48363002 - Lx2B LINE L1 0 7000 6182 3 1433 312 27 0 0 chr3 111237951 111237988 -48361795 + (TC)n Simple_repeat Simple_repeat 2 38 0 3 1433 402 69 0 0 chr3 111237988 111238045 -48361738 + (TG)n Simple_repeat Simple_repeat 1 58 0 3 1433 249 33 0 0 chr3 111238661 111238691 -48361092 + (TC)n Simple_repeat Simple_repeat 1 30 0 3 1433 2561 227 36 16 chr3 111238889 111239439 -48360344 + Lx5 LINE L1 6309 6869 -181 3 1433 280 88 0 34 chr3 111239495 111239554 -48360229 + (TTTTTG)n Simple_repeat Simple_repeat 4 60 0 3 1433 272 302 35 0 chr3 111239590 111239706 -48360077 + Lx9 LINE L1 7354 7473 -171 3 1433 629 350 47 33 chr3 111239981 111240282 -48359501 - MTE2b LTR MaLR -5 374 70 3 1433 443 207 40 72 chr3 111240312 111240402 -48359381 + B2_Mm2 SINE B2 70 162 -33 3 1433 315 0 0 0 chr3 111240402 111240437 -48359346 + (TA)n Simple_repeat Simple_repeat 1 35 0 3 1433 443 207 40 72 chr3 111240437 111240450 -48359333 + B2_Mm2 SINE B2 163 168 -27 3 1433 1740 106 32 29 chr3 111240450 111240731 -48359052 - L1Md_F2 LINE L1 0 6582 6301 3 1433 443 207 40 72 chr3 111240731 111240751 -48359032 + B2_Mm2 SINE B2 169 189 -6 3 1433 694 158 22 0 chr3 111240753 111240892 -48358891 + GA-rich Low_complexity Low_complexity 1 142 0 3 1433 325 120 0 20 chr3 111240893 111240944 -48358839 + (GAGAA)n Simple_repeat Simple_repeat 1 50 0 3 1433 978 68 4 0 chr3 111240946 111241083 -48358700 + L1Md_T LINE L1 5473 5615 -559 3 1433 8223 36 8 0 chr3 111241083 111242069 -48357714 + L1Md_T LINE L1 5587 6580 -2 3 1433 236 200 0 62 chr3 111242217 111242297 -48357486 + (TTTG)n Simple_repeat Simple_repeat 2 76 0 3 1433 392 179 30 0 chr3 111242299 111242382 -48357401 - B1_Mus2 SINE Alu 0 120 25 3 1433 22 56 0 0 chr3 111242397 111242433 -48357350 + AT_rich Low_complexity Low_complexity 1 36 0 3 1433 285 262 65 65 chr3 111242602 111242757 -48357026 + RLTR42-int LTR ERVK 1232 1386 -4136 3 1433 22 0 0 0 chr3 111243124 111243146 -48356637 + AT_rich Low_complexity Low_complexity 1 22 0 3 1433 454 296 163 19 chr3 111243185 111243608 -48356175 - L1ME1 LINE L1 -163 6016 5533 3 1433 233 300 17 0 chr3 111243715 111243835 -48355948 - L1ME1 LINE L1 -817 5425 5304 3 1433 28 29 0 0 chr3 111244068 111244103 -48355680 + AT_rich Low_complexity Low_complexity 1 35 0 3 1433 1860 248 3 5 chr3 111244218 111244603 -48355180 - Lx5 LINE L1 -233 6817 6434 3 1433 479 211 18 0 chr3 111244591 111244705 -48355078 + L1_Mur2 LINE L1 5181 5296 -581 3 1433 3976 151 61 3 chr3 111244697 111245386 -48354397 + Lx2 LINE L1 5917 6645 -352 3 1433 534 95 480 0 chr3 111245384 111245534 -48354249 + Lx2 LINE L1 6775 6996 -1 3 1433 1895 204 92 7 chr3 111245517 111245972 -48353811 + L1_Mur2 LINE L1 5268 5761 -116 3 1433 311 192 14 0 chr3 111246806 111246879 -48352904 + (TA)n Simple_repeat Simple_repeat 1 74 0 3 1433 784 319 69 4 chr3 111247009 111247270 -48352513 - MTE2b LTR MaLR -78 301 24 3 1433 429 364 30 0 chr3 111248059 111248224 -48351559 + B3A SINE B2 6 175 -23 3 1433 27 49 0 0 chr3 111248992 111249033 -48350750 + AT_rich Low_complexity Low_complexity 1 41 0 3 1433 383 272 17 142 chr3 111249034 111249210 -48350573 + RMER5 LTR ERV1 77 230 -304 4 1433 31261 116 4 5 chr3 111249233 111250583 -48349200 + L1Md_F2 LINE L1 627 1973 -3910 4 1433 216 0 0 0 chr3 111250583 111250607 -48349176 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 4 1433 31261 80 4 6 chr3 111250607 111254229 -48345554 + L1Md_F2 LINE L1 1974 5590 -293 4 1433 7188 79 20 14 chr3 111254229 111255216 -48344567 + L1Md_F2 LINE L1 5587 6579 -3 4 1433 747 258 72 54 chr3 111255241 111255520 -48344263 + RMER5 LTR ERV1 248 531 -3 4 1433 611 94 10 0 chr3 111255607 111255703 -48344080 + (CA)n Simple_repeat Simple_repeat 2 98 0 4 1433 299 363 5 67 chr3 111256311 111256506 -48343277 - RMER15 LTR ERVL -57 518 336 4 1433 417 54 0 0 chr3 111256772 111256828 -48342955 + (CA)n Simple_repeat Simple_repeat 1 56 0 4 1433 998 87 0 21 chr3 111257047 111257188 -48342595 - L1_Mus4 LINE L1 -256 6380 6243 4 1433 21 57 0 0 chr3 111257340 111257375 -48342408 + AT_rich Low_complexity Low_complexity 1 35 0 4 1433 4691 157 7 17 chr3 111257378 111258190 -48341593 - Lx3B LINE L1 -5 6968 6165 4 1433 4346 159 33 30 chr3 111258190 111259157 -48340626 - L1Md_F2 LINE L1 -3 6579 5623 4 1433 29 0 0 0 chr3 111259872 111259901 -48339882 + AT_rich Low_complexity Low_complexity 1 29 0 4 1433 7336 74 6 13 chr3 111261113 111262098 -48337685 - L1_Mus2 LINE L1 -1 6565 5588 4 1433 8240 36 0 0 chr3 111262130 111263317 -48336466 - L1Md_T LINE L1 0 6582 5396 4 1433 2980 22 0 0 chr3 111263315 111263670 -48336113 + L1Md_T LINE L1 5042 5396 -487 4 1433 1099 258 22 40 chr3 111263678 111264083 -48335700 - RMER19B LTR ERVK -2 900 220 4 1433 1062 82 0 20 chr3 111264099 111264249 -48335534 + B1_Mus2 SINE Alu 1 147 0 4 1433 1242 289 58 39 chr3 111264699 111265254 -48334529 + Lx6 LINE L1 6498 7447 -13 4 1433 219 36 0 0 chr3 111265369 111265397 -48334386 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 4 1433 342 335 93 16 chr3 111266464 111266658 -48333125 + B3 SINE B2 2 210 -6 4 1433 215 357 20 40 chr3 111266906 111266917 -48332866 + BC1_Mm scRNA scRNA 4 22 -130 4 1433 289 274 0 0 chr3 111266917 111266990 -48332793 + B4 SINE B4 14 86 -206 4 1433 215 357 20 40 chr3 111266990 111267055 -48332728 + BC1_Mm scRNA scRNA 23 149 -3 4 1433 21 57 0 0 chr3 111267522 111267557 -48332226 + AT_rich Low_complexity Low_complexity 1 35 0 4 1433 228 226 11 21 chr3 111267989 111268084 -48331699 + (TA)n Simple_repeat Simple_repeat 2 95 0 4 1433 180 0 0 0 chr3 111268279 111268299 -48331484 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 4 1433 1409 75 0 16 chr3 111268312 111268501 -48331282 - B2_Mm1a SINE B2 -6 187 2 4 1433 583 340 42 8 chr3 111268542 111268779 -48331004 + B4A SINE B4 16 260 -32 4 1433 204 40 0 0 chr3 111268793 111268818 -48330965 + (CA)n Simple_repeat Simple_repeat 2 26 0 4 1433 355 329 78 52 chr3 111269868 111270022 -48329761 + RSINE1 SINE B4 8 165 0 4 1433 21 0 0 0 chr3 111270034 111270055 -48329728 + AT_rich Low_complexity Low_complexity 1 21 0 4 1433 811 268 182 8 chr3 111271140 111271478 -48328305 + MTD LTR MaLR 13 404 -15 4 1433 7341 60 1 12 chr3 111271527 111272477 -48327306 - L1Md_F2 LINE L1 -1 6581 5642 4 1433 7269 79 17 3 chr3 111272472 111273841 -48325942 - L1Md_F2 LINE L1 -1 6581 5197 4 1433 2486 77 12 0 chr3 111273838 111274174 -48325609 + L1Md_F2 LINE L1 4835 5174 -709 4 1433 5849 83 1 1 chr3 111274172 111274955 -48324828 - L1_Mm LINE L1 -227 5656 4874 4 1433 374 0 22 0 chr3 111275260 111275306 -48324477 + (TC)n Simple_repeat Simple_repeat 2 48 0 4 1433 672 36 0 0 chr3 111275306 111275388 -48324395 + (TG)n Simple_repeat Simple_repeat 2 84 0 4 1433 851 194 139 30 chr3 111275977 111276280 -48323503 - Lx9 LINE L1 -7 7637 7302 4 1433 258 81 0 0 chr3 111277147 111277184 -48322599 + (TAAA)n Simple_repeat Simple_repeat 3 39 0 4 1433 207 0 0 0 chr3 111277253 111277276 -48322507 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 4 1433 664 269 66 0 chr3 111278003 111278185 -48321598 + ORR1C2 LTR MaLR 191 384 0 4 1433 26 88 0 0 chr3 111279159 111279227 -48320556 + AT_rich Low_complexity Low_complexity 1 68 0 4 1433 1053 196 93 9 chr3 111279373 111279589 -48320194 - ORR1A3 LTR MaLR 0 326 93 4 1433 7133 72 19 33 chr3 111279600 111279620 -48320163 - L1_Mus1 LINE L1 0 6567 6557 4 1433 1577 36 0 20 chr3 111279620 111279816 -48319967 - B2_Mm1a SINE B2 -1 192 1 4 179 23336 135 9 40 chr3 111279816 111281522 -48318261 - L1_Mus1 LINE L1 -11 6556 4842 4 1434 2309 139 29 5 chr3 111281522 111281905 -48317878 - RLTR9F LTR ERVK -23 392 1 4 1434 23336 135 9 40 chr3 111281905 111283527 -48316256 - L1_Mus1 LINE L1 -11 4841 3209 4 1434 3637 69 19 0 chr3 111283527 111283993 -48315790 + MT2C_Mm LTR ERVL 1 475 0 4 1434 23336 127 22 7 chr3 111283993 111286688 -48313095 - L1_Mus1 LINE L1 -2675 3208 470 4 1434 525 138 0 155 chr3 111286689 111286818 -48312965 - ORR1A3 LTR MaLR -220 109 1 4 1434 684 335 79 58 chr3 111286820 111287200 -48312583 + MT2A LTR ERVL 72 459 -74 4 1434 409 260 29 0 chr3 111287521 111287625 -48312158 + PB1D9 SINE Alu 9 115 -5 4 1434 22 56 0 0 chr3 111287712 111287748 -48312035 + AT_rich Low_complexity Low_complexity 1 36 0 4 1434 25 31 0 0 chr3 111288690 111288722 -48311061 + AT_rich Low_complexity Low_complexity 1 32 0 4 1434 359 292 0 59 chr3 111289020 111289122 -48310661 + RSINE1 SINE B4 5 100 -65 4 1434 252 86 0 0 chr3 111289228 111289263 -48310520 + (TGAA)n Simple_repeat Simple_repeat 3 37 0 4 1434 6908 134 22 4 chr3 111289349 111290484 -48309299 + Lx2 LINE L1 5841 6995 -2 4 1434 1267 166 12 4 chr3 111290564 111290806 -48308977 + RMER6-int LTR ERVK 387 630 -2547 4 1434 265 263 0 17 chr3 111290810 111290868 -48308915 + LSU-rRNA_Hsa rRNA rRNA 1781 1837 -3198 4 1434 1510 154 40 46 chr3 111290868 111291194 -48308589 + RMER6-int LTR ERVK 2579 2902 -275 4 1434 752 175 52 0 chr3 111291218 111291372 -48308411 + RMER6C LTR ERVK 172 333 -357 4 1434 1730 118 23 0 chr3 111291377 111291640 -48308143 + Lx2A LINE L1 6668 6936 -72 4 1434 627 199 0 18 chr3 111291655 111291824 -48307959 + (TAA)n Simple_repeat Simple_repeat 1 166 0 4 1434 1028 141 78 0 chr3 111291924 111292115 -48307668 + RMER6C LTR ERVK 484 689 -1 4 1434 317 326 55 55 chr3 111292353 111292590 -48307193 - MER2 DNA MER2_type -86 259 23 4 1434 992 254 28 68 chr3 111292608 111293005 -48306778 + L1MA7 LINE L1 5534 5914 -377 4 1434 5107 266 51 38 chr3 111293164 111295523 -48304260 - Lx5 LINE L1 -19 7031 4642 4 1434 4373 225 86 32 chr3 111295536 111296707 -48303076 - Lx5 LINE L1 -1645 4235 2984 4 1434 1017 113 0 0 chr3 111296707 111296884 -48302899 + (TC)n Simple_repeat Simple_repeat 1 177 0 4 1434 4373 225 86 32 chr3 111296884 111297169 -48302614 - Lx5 LINE L1 -2897 2983 2700 4 1434 1143 114 54 11 chr3 111297459 111297645 -48302138 + B2_Mm2 SINE B2 2 195 0 4 1434 252 0 0 0 chr3 111297673 111297701 -48302082 + (TAAA)n Simple_repeat Simple_repeat 1 28 0 4 1434 24 0 0 0 chr3 111297767 111297791 -48301992 + AT_rich Low_complexity Low_complexity 1 24 0 4 1434 4635 96 45 28 chr3 111298801 111299540 -48300243 - RMER17A LTR ERVK 0 751 1 4 1434 373 328 98 49 chr3 111299614 111299819 -48299964 - MER54B LTR ERVL -136 657 443 4 1434 344 232 32 0 chr3 111300256 111300381 -48299402 - Lx9 LINE L1 0 7644 7516 4 1434 432 0 0 0 chr3 111300395 111300443 -48299340 + (CA)n Simple_repeat Simple_repeat 1 48 0 4 1434 1653 245 85 85 chr3 111300448 111301131 -48298652 - Lx9 LINE L1 -201 7443 6761 4 1434 399 368 19 0 chr3 111301705 111301860 -48297923 + MTEa LTR MaLR 17 174 -205 4 1434 252 213 0 0 chr3 111301978 111302039 -48297744 + GA-rich Low_complexity Low_complexity 1 61 0 4 1434 1283 67 6 0 chr3 111302041 111302220 -48297563 + (GA)n Simple_repeat Simple_repeat 1 180 0 4 1434 222 37 0 0 chr3 111302552 111302579 -48297204 + (TG)n Simple_repeat Simple_repeat 2 28 0 4 1434 284 384 80 46 chr3 111302593 111302855 -48296928 + LTR16B2 LTR ERVL 34 304 -158 4 1434 642 72 0 0 chr3 111302873 111302970 -48296813 + (TC)n Simple_repeat Simple_repeat 1 97 0 4 1434 28 29 0 0 chr3 111303077 111303112 -48296671 + AT_rich Low_complexity Low_complexity 1 35 0 4 1434 324 186 0 0 chr3 111303136 111303249 -48296534 + (TAGA)n Simple_repeat Simple_repeat 2 114 0 4 1434 10737 160 81 60 chr3 111303280 111304612 -48295171 - Lx4A LINE L1 -433 6625 5282 4 1434 2663 111 10 2 chr3 111304612 111305009 -48294774 - L1_Mus3 LINE L1 -3 6635 6236 4 1434 10737 166 15 172 chr3 111305009 111305194 -48294589 - Lx4A LINE L1 -596 5281 5099 4 1434 2299 138 44 10 chr3 111305194 111305582 -48294201 + RLTR9E LTR ERVK 9 409 0 4 1434 10737 166 15 172 chr3 111305582 111307467 -48292316 - Lx4A LINE L1 -596 5098 3225 4 1434 648 38 0 0 chr3 111307486 111307565 -48292218 + (GAAA)n Simple_repeat Simple_repeat 4 82 0 4 1434 6963 147 30 3 chr3 111307565 111309102 -48290681 + L1_Mus4 LINE L1 5025 6634 -2 4 1434 1213 291 118 94 chr3 111309098 111309792 -48289991 - Lx6 LINE L1 -267 7193 6483 4 1434 249 261 14 0 chr3 111311460 111311529 -48288254 - Lx7 LINE L1 -1515 6181 6112 4 1434 766 204 39 48 chr3 111311539 111311770 -48288013 + Lx9 LINE L1 7292 7520 -124 4 1434 3367 57 0 0 chr3 111312080 111312501 -48287282 - L1Md_F2 LINE L1 -14 6568 6148 4 1434 1411 71 0 0 chr3 111312501 111312685 -48287098 - L1Md_F2 LINE L1 -561 6021 5838 4 1434 1441 0 0 0 chr3 111312683 111312843 -48286940 + L1Md_F2 LINE L1 5694 5853 -729 4 1434 1746 236 171 8 chr3 111312844 111313370 -48286413 - RMER6C LTR ERVK -78 612 1 4 1434 553 323 33 60 chr3 111313434 111313767 -48286016 + Lx7 LINE L1 6953 7276 -420 4 1434 55 40 0 0 chr3 111313866 111313942 -48285841 + AT_rich Low_complexity Low_complexity 1 76 0 4 1434 398 295 70 65 chr3 111314353 111314567 -48285216 + MLT2B4 LTR ERVL 1 215 -341 4 1434 2306 210 69 61 chr3 111314648 111315333 -48284450 - RMER6C LTR ERVK 0 690 1 4 1434 230 352 0 14 chr3 111315372 111315444 -48284339 - ID4_ SINE ID -11 72 2 4 1434 1581 273 57 20 chr3 111317547 111318133 -48281650 - Lx4B LINE L1 0 7000 6397 4 1434 668 285 74 9 chr3 111318202 111318432 -48281351 + RLTR41 LTR ERV1 200 444 -2 4 1434 2168 231 34 19 chr3 111318433 111318966 -48280817 - Lx4B LINE L1 -653 6405 5865 4 1434 240 161 35 35 chr3 111318961 111319019 -48280764 - Lx3C LINE L1 -1182 5794 5737 4 1434 4029 172 27 138 chr3 111319008 111320161 -48279622 + L1_Mur2 LINE L1 2887 3911 -1966 4 1434 5220 137 12 7 chr3 111320284 111321915 -48277868 + L1VL2 LINE L1 96 1735 -1880 4 1434 29995 26 0 0 chr3 111321922 111326211 -48273572 - L1Md_T LINE L1 0 6582 2294 4 1434 5175 169 8 21 chr3 111326217 111327401 -48272382 + L1_Mus3 LINE L1 3947 4945 -938 4 1434 1745 141 11 4 chr3 111327395 111327672 -48272111 - L1_Mus3 LINE L1 -62 6576 6298 4 1434 1552 89 5 0 chr3 111327670 111327884 -48271899 + L1_Mus3 LINE L1 6062 6276 -362 4 1434 6914 140 6 2 chr3 111327882 111329585 -48270198 + L1_Mus3 LINE L1 4924 6634 -4 4 1434 285 333 146 37 chr3 111330156 111330424 -48269359 - RMER15 LTR ERVL -2 573 277 4 1434 39 38 0 0 chr3 111330722 111330775 -48269008 + AT_rich Low_complexity Low_complexity 1 53 0 4 1434 438 318 106 19 chr3 111331108 111331821 -48267962 - L1MA7 LINE L1 -391 5900 5116 4 1434 7992 167 50 9 chr3 111332043 111332605 -48267178 + L1_Mm LINE L1 4067 4630 -1253 5 1434 235 0 57 0 chr3 111332605 111332640 -48267143 + (CAAAA)n Simple_repeat Simple_repeat 4 40 0 5 1434 7992 167 50 9 chr3 111332640 111333611 -48266172 + L1_Mm LINE L1 4631 5661 -222 5 1434 355 306 89 71 chr3 111333614 111333783 -48266000 - RMER2 LTR ERV1 -62 505 334 5 1434 7587 70 6 2 chr3 111334079 111335668 -48264115 - L1Md_F2 LINE L1 -12 6570 4979 5 1434 389 330 64 25 chr3 111335664 111335866 -48263917 - Lx7 LINE L1 -424 7272 7063 5 1434 22 0 0 0 chr3 111336115 111336137 -48263646 + AT_rich Low_complexity Low_complexity 1 22 0 5 1434 21 0 0 0 chr3 111336733 111336754 -48263029 + AT_rich Low_complexity Low_complexity 1 21 0 5 1434 578 364 34 9 chr3 111336996 111337229 -48262554 - MTEa LTR MaLR 0 379 141 5 1434 6908 102 31 3 chr3 111337299 111338617 -48261166 - L1_Mus3 LINE L1 -10 6628 5279 5 1434 4888 93 7 0 chr3 111338617 111339302 -48260481 + L1_Mus1 LINE L1 5877 6566 -1 5 1434 4161 119 36 0 chr3 111339706 111340804 -48258979 - L1_Mur1 LINE L1 -4008 1878 676 5 1434 313 260 27 95 chr3 111340840 111341061 -48258722 - L1_Mur1 LINE L1 -6723 261 56 5 1434 5345 109 12 6 chr3 111341062 111341871 -48257912 + Lx3_Mus LINE L1 6193 7006 -3 5 1434 27 0 0 0 chr3 111341872 111341899 -48257884 + AT_rich Low_complexity Low_complexity 1 27 0 5 1434 192 125 0 0 chr3 111342055 111342087 -48257696 + (TATATG)n Simple_repeat Simple_repeat 5 36 0 5 1434 27 29 0 0 chr3 111342278 111342312 -48257471 + AT_rich Low_complexity Low_complexity 1 34 0 5 1434 23 0 0 0 chr3 111342398 111342421 -48257362 + AT_rich Low_complexity Low_complexity 1 23 0 5 1434 204 121 33 33 chr3 111342487 111342547 -48257236 + (TTTG)n Simple_repeat Simple_repeat 1 60 0 5 1434 195 129 0 0 chr3 111342545 111342576 -48257207 + (TGAA)n Simple_repeat Simple_repeat 1 31 0 5 1434 412 364 37 12 chr3 111343698 111343719 -48256064 - B3A SINE B2 -30 168 149 5 1434 311 0 0 25 chr3 111343719 111343759 -48256024 + (TG)n Simple_repeat Simple_repeat 1 39 0 5 1434 412 364 37 12 chr3 111343759 111343901 -48255882 - B3A SINE B2 -50 148 1 5 1434 2991 171 4 0 chr3 111345083 111345586 -48254197 - Lx3B LINE L1 -3 6970 6466 5 1434 382 364 50 20 chr3 111345647 111345849 -48253934 - MLT1A0 LTR MaLR -127 238 31 5 1434 366 23 0 0 chr3 111345919 111345962 -48253821 + (TATG)n Simple_repeat Simple_repeat 2 44 0 5 1434 2985 181 31 4 chr3 111346234 111346788 -48252995 - Lx2B LINE L1 -14 6986 6418 5 1434 303 28 0 0 chr3 111347104 111347140 -48252643 + (TG)n Simple_repeat Simple_repeat 2 37 0 5 1434 394 322 43 17 chr3 111347153 111347270 -48252513 - RSINE1 SINE B4 -43 122 3 5 1434 22 99 0 0 chr3 111348150 111348221 -48251562 + AT_rich Low_complexity Low_complexity 1 71 0 5 1434 27 49 0 0 chr3 111348269 111348310 -48251473 + AT_rich Low_complexity Low_complexity 1 41 0 5 1434 24 67 0 0 chr3 111348380 111348425 -48251358 + AT_rich Low_complexity Low_complexity 1 45 0 5 1434 24 0 0 0 chr3 111348720 111348744 -48251039 + AT_rich Low_complexity Low_complexity 1 24 0 5 1434 701 58 0 0 chr3 111348831 111348917 -48250866 + L1Md_F2 LINE L1 6298 6383 -199 5 1434 351 203 17 0 chr3 111348917 111348999 -48250784 + B1_Mur4 SINE Alu 56 141 -9 5 1434 2233 194 74 90 chr3 111349853 111350554 -48249229 + RMER6C LTR ERVK 1 690 0 5 1434 509 157 8 0 chr3 111351152 111351286 -48248497 + CT-rich Low_complexity Low_complexity 2 136 0 5 1434 216 0 0 0 chr3 111351428 111351452 -48248331 + (TAA)n Simple_repeat Simple_repeat 1 24 0 5 1434 995 47 8 0 chr3 111351666 111351795 -48247988 + (TTTC)n Simple_repeat Simple_repeat 3 132 0 5 1434 450 0 0 0 chr3 111352087 111352137 -48247646 + (GA)n Simple_repeat Simple_repeat 2 51 0 5 1434 3781 133 20 8 chr3 111352905 111353512 -48246271 + Lx3B LINE L1 6357 6970 -3 5 1434 30 77 0 0 chr3 111353519 111353584 -48246199 + AT_rich Low_complexity Low_complexity 1 65 0 5 1434 21 0 0 0 chr3 111353604 111353625 -48246158 + AT_rich Low_complexity Low_complexity 1 21 0 5 1434 237 296 212 39 chr3 111353939 111354118 -48245665 + MTD LTR MaLR 210 419 0 5 1434 6825 133 21 2 chr3 111354413 111355642 -48244141 - Lx LINE L1 -1 6653 5401 5 1434 23 33 0 0 chr3 111355993 111356023 -48243760 + AT_rich Low_complexity Low_complexity 1 30 0 5 1434 367 311 24 32 chr3 111357030 111357153 -48242630 + B3 SINE B2 86 207 -9 5 1434 22 56 0 0 chr3 111357748 111357784 -48241999 + AT_rich Low_complexity Low_complexity 1 36 0 5 1434 595 277 99 21 chr3 111358116 111358308 -48241475 + B3 SINE B2 3 209 -7 5 1434 408 39 0 0 chr3 111358435 111358458 -48241325 + (TA)n Simple_repeat Simple_repeat 2 24 0 5 1434 801 58 0 0 chr3 111358458 111358561 -48241222 + (CA)n Simple_repeat Simple_repeat 2 104 0 5 1434 408 39 0 0 chr3 111358561 111358589 -48241194 + (TA)n Simple_repeat Simple_repeat 2 29 0 5 1434 662 203 7 13 chr3 111358919 111359069 -48240714 - URR1A DNA MER1_type 0 226 78 5 1434 235 376 16 49 chr3 111360184 111360307 -48239476 + RCHARR1 DNA MER1_type 188 306 -668 5 1434 459 202 0 0 chr3 111360426 111360525 -48239258 + CT-rich Low_complexity Low_complexity 5 103 0 5 1434 3238 266 55 20 chr3 111360525 111361526 -48238257 - Lx6 LINE L1 -566 6894 5859 5 1434 2821 140 45 6 chr3 111362144 111362612 -48237171 + Lx LINE L1 6168 6653 -1 5 1434 5434 37 5 0 chr3 111362680 111363329 -48236454 - L1Md_F3 LINE L1 0 6584 5933 5 1434 35080 72 5 1 chr3 111363338 111369354 -48230429 - L1Md_F3 LINE L1 -14 6570 580 5 1434 2646 40 0 6 chr3 111369365 111369689 -48230094 - L1Md_F3 LINE L1 -635 5949 5628 5 1434 6018 101 35 4 chr3 111369784 111370690 -48229093 - L1_Mus3 LINE L1 0 6638 5705 5 1434 23 0 0 0 chr3 111370902 111370925 -48228858 + AT_rich Low_complexity Low_complexity 1 23 0 5 1434 324 326 48 14 chr3 111370934 111371080 -48228703 - MLT1D LTR MaLR -354 151 1 5 1434 482 263 0 0 chr3 111373363 111373481 -48226302 - RMER19C LTR ERVK 0 611 494 5 1434 1439 165 11 0 chr3 111373488 111373748 -48226035 + RLTR31A_Mm LTR ERVK 7 315 -246 5 1434 8918 65 6 0 chr3 111373748 111375617 -48224166 - L1Md_F2 LINE L1 -17 6565 4685 5 1434 1334 244 77 34 chr3 111375621 111375948 -48223835 + RLTR31A_Mm LTR ERVK 244 584 0 5 1434 1375 233 73 86 chr3 111375950 111376546 -48223237 - RMER19C LTR ERVK -115 496 10 5 1434 4964 117 9 3 chr3 111376546 111377325 -48222458 - L1_Mur1 LINE L1 -1007 4879 4096 5 1434 730 150 75 0 chr3 111377322 111377469 -48222314 - L1_Mur1 LINE L1 -1707 4179 4022 5 1434 8022 127 21 12 chr3 111377451 111378820 -48220963 + Lx3_Mus LINE L1 5516 6891 -118 5 1434 4243 132 18 17 chr3 111378824 111379646 -48220137 + RLTR13D2 LTR ERVK 1 1018 -5 5 1434 381 186 39 19 chr3 111379646 111379750 -48220033 + Lx3_Mus LINE L1 6867 6972 -9 5 1434 233 228 0 0 chr3 111379779 111379836 -48219947 + A-rich Low_complexity Low_complexity 1 57 0 5 1434 2669 37 0 0 chr3 111379856 111380177 -48219606 - L1Md_T LINE L1 0 6585 6265 5 1434 2556 103 21 126 chr3 111380177 111380708 -48219075 + IAPLTR2_Mm LTR ERVK 1 475 0 5 1434 342 67 0 0 chr3 111380737 111380782 -48219001 + (A)n Simple_repeat Simple_repeat 1 45 0 5 1434 2730 72 37 24 chr3 111380782 111381164 -48218619 + IAPEz-int LTR ERVK 276 662 -5819 5 1434 2163 83 0 0 chr3 111381164 111381442 -48218341 + IAPEz-int LTR ERVK 1359 1636 -4845 5 1434 5844 51 3 28 chr3 111381441 111382206 -48217577 + IAPEz-int LTR ERVK 5736 6481 0 5 1434 2432 101 14 160 chr3 111382206 111382762 -48217021 + IAPLTR2_Mm LTR ERVK 1 475 0 5 1434 30706 46 0 152 chr3 111382776 111389807 -48209976 - L1Md_T LINE L1 -315 6270 271 5 1434 684 82 10 0 chr3 111390291 111390388 -48209395 + B1_Mus1 SINE Alu 1 98 -50 5 1434 471 35 0 0 chr3 111391181 111391238 -48208545 + (CA)n Simple_repeat Simple_repeat 2 58 0 5 1434 1895 246 5 2 chr3 111391535 111391938 -48207845 + Lx5 LINE L1 6271 6674 -376 5 1434 513 0 0 0 chr3 111391939 111391996 -48207787 + (TA)n Simple_repeat Simple_repeat 1 57 0 5 1434 516 100 0 0 chr3 111392138 111392208 -48207575 + IAPEY2_LTR LTR ERVK 1 70 -287 5 1434 315 26 0 0 chr3 111392208 111392246 -48207537 - L1_Mm LINE L1 -1275 4608 4571 5 1434 707 109 4 33 chr3 111392246 111392383 -48207400 + IAPEY2_LTR LTR ERVK 204 357 0 5 1434 252 0 0 0 chr3 111392613 111392641 -48207142 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 5 1434 523 219 62 39 chr3 111393243 111393371 -48206412 + Lx8 LINE L1 6332 6462 -1011 5 1434 201 136 58 43 chr3 111393436 111393482 -48206301 + (TTTA)n Simple_repeat Simple_repeat 2 47 0 5 1434 1053 116 0 13 chr3 111393482 111393631 -48206152 - B1_Mus1 SINE Alu -1 147 1 5 1434 201 136 58 43 chr3 111393631 111393653 -48206130 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 5 1434 2935 247 38 18 chr3 111393655 111394542 -48205241 - Lx2B LINE L1 -2 6974 6050 5 1434 2507 179 3 3 chr3 111394539 111395060 -48204723 + Lx4B LINE L1 5400 5928 -1130 5 1434 6609 159 172 22 chr3 111395068 111396517 -48203266 + ORR1B1-int LTR MaLR 296 1961 -2 5 1434 555 123 16 54 chr3 111396509 111396637 -48203146 + ORR1B1 LTR MaLR 1 132 -262 5 1434 1371 52 17 0 chr3 111396637 111396810 -48202973 - L1Md_F3 LINE L1 -180 6404 6229 5 1434 306 0 0 0 chr3 111397540 111397574 -48202209 + (TG)n Simple_repeat Simple_repeat 2 35 0 5 1434 316 333 72 78 chr3 111398220 111398507 -48201276 - ORR1E LTR MaLR -14 405 118 5 1434 4002 234 96 5 chr3 111398563 111399583 -48200200 + Lx4A LINE L1 5946 7058 0 5 1434 221 0 0 33 chr3 111399615 111399645 -48200138 + (CAAA)n Simple_repeat Simple_repeat 1 29 0 5 1434 1829 234 35 49 chr3 111399659 111400171 -48199612 + RMER6D LTR ERVK 1 505 -215 5 1434 1560 242 77 34 chr3 111400174 111400671 -48199112 + RLTR22_Mur LTR ERVK 4 521 -1327 5 1434 2055 213 9 14 chr3 111400675 111401103 -48198680 + Lx2B LINE L1 6237 6662 -338 5 1434 3166 11 0 44 chr3 111401103 111401487 -48198296 - IAPLTR1_Mm LTR ERVK 0 367 1 5 1434 47918 19 1 1 chr3 111401487 111406888 -48192895 - IAPEz-int LTR ERVK 0 6481 1081 5 1434 971 136 7 7 chr3 111406880 111407028 -48192755 - IAPEz-int LTR ERVK -5297 2383 2236 5 1434 442 66 0 32 chr3 111407017 111407080 -48192703 - IAPEz-int LTR ERVK -5062 1419 1359 5 1434 4706 61 46 16 chr3 111407080 111407716 -48192067 - IAPEz-int LTR ERVK -5819 662 8 5 1434 3166 11 0 44 chr3 111407716 111408100 -48191683 - IAPLTR1_Mm LTR ERVK 0 367 1 5 1434 716 231 76 92 chr3 111408113 111408428 -48191355 + Lx2B LINE L1 6661 6970 -30 5 1434 2247 231 123 80 chr3 111408428 111409020 -48190763 + RLTR22_Mur LTR ERVK 477 1113 -735 5 1434 605 72 10 10 chr3 111409020 111409118 -48190665 - L1_Mus2 LINE L1 0 6566 6469 5 1434 2247 231 123 80 chr3 111409118 111409349 -48190434 + RLTR22_Mur LTR ERVK 1114 1327 -521 5 1434 566 109 11 0 chr3 111409349 111409441 -48190342 + (TG)n Simple_repeat Simple_repeat 2 94 0 5 1434 2247 231 123 80 chr3 111409441 111409534 -48190249 + RLTR22_Mur LTR ERVK 1328 1434 -414 5 1434 216 122 73 0 chr3 111409605 111409646 -48190137 + A-rich Low_complexity Low_complexity 1 44 0 5 1434 2815 80 26 0 chr3 111409653 111410043 -48189740 - MTB LTR MaLR 0 400 1 5 1434 24 0 0 0 chr3 111410522 111410546 -48189237 + AT_rich Low_complexity Low_complexity 1 24 0 6 1434 218 237 0 17 chr3 111411085 111411145 -48188638 + (TA)n Simple_repeat Simple_repeat 1 59 0 6 1435 25 31 0 0 chr3 111412096 111412128 -48187655 + AT_rich Low_complexity Low_complexity 1 32 0 6 1435 418 287 149 0 chr3 111412229 111412417 -48187366 - B3 SINE B2 0 216 1 6 1435 31 58 0 0 chr3 111413135 111413187 -48186596 + AT_rich Low_complexity Low_complexity 1 52 0 6 1435 517 350 21 21 chr3 111414300 111414490 -48185293 - B3 SINE B2 0 216 27 6 1435 2419 70 13 0 chr3 111414651 111414967 -48184816 - L1_Mus1 LINE L1 0 6567 6248 6 1435 25 0 0 0 chr3 111415248 111415273 -48184510 + AT_rich Low_complexity Low_complexity 1 25 0 6 1435 228 345 75 37 chr3 111415281 111415468 -48184315 + Lx8 LINE L1 6384 6577 -896 6 1435 1286 204 128 122 chr3 111415468 111416000 -48183783 + RMER6C LTR ERVK 1 535 -155 6 1435 521 244 127 6 chr3 111416037 111416218 -48183565 - L1_Mus2 LINE L1 0 6566 6364 6 1435 2196 230 60 33 chr3 111416218 111416767 -48183016 - RMER19C LTR ERVK -47 564 1 6 1435 562 235 23 0 chr3 111416767 111416898 -48182885 + RMER6C LTR ERVK 531 664 -26 6 1435 448 309 60 22 chr3 111417287 111417472 -48182311 - Lx8 LINE L1 -1149 6324 6133 6 1435 2198 99 139 19 chr3 111417692 111418051 -48181732 + RLTR9D LTR ERVK 2 403 0 6 1435 618 245 99 0 chr3 111418300 111418492 -48181291 - Lx2 LINE L1 -2 6995 6785 6 1435 289 330 28 29 chr3 111418613 111418901 -48180882 - Lx8 LINE L1 -657 5640 5297 6 1435 720 349 26 9 chr3 111418889 111419422 -48180361 - L1_Mur3 LINE L1 -612 5268 4727 6 1435 961 292 67 12 chr3 111419438 111419767 -48180016 + Lx8 LINE L1 6346 6692 -781 6 1435 366 319 25 14 chr3 111419809 111419937 -48179846 - Lx5 LINE L1 -54 7004 6858 6 1435 340 287 33 53 chr3 111420133 111420284 -48179499 - RLTR11B LTR ERVK -22 431 284 6 1435 517 304 18 44 chr3 111420358 111420585 -48179198 - RLTR11B LTR ERVK -171 282 62 6 1435 8060 268 71 59 chr3 111420600 111422628 -48177155 + Lx5 LINE L1 2450 4653 -1233 6 1435 495 0 0 0 chr3 111422628 111422683 -48177100 + (AATAG)n Simple_repeat Simple_repeat 2 56 0 6 1435 8060 275 62 56 chr3 111422683 111425200 -48174583 + Lx5 LINE L1 4654 7663 -33 6 1435 312 127 0 0 chr3 111425213 111425268 -48174515 + (CAGA)n Simple_repeat Simple_repeat 2 56 0 6 1435 1079 115 11 0 chr3 111425269 111425443 -48174340 + (GAAA)n Simple_repeat Simple_repeat 4 179 0 6 1435 273 304 96 35 chr3 111425818 111426016 -48173767 - MLT-int LTR MaLR -1266 469 260 6 1435 1206 291 138 17 chr3 111426017 111426560 -48173223 - Lx6 LINE L1 -3 7457 6478 6 1435 227 313 141 0 chr3 111426585 111426684 -48173099 - Lx6 LINE L1 -732 6728 6616 6 1435 545 54 0 42 chr3 111426743 111426839 -48172944 - L1Md_F2 LINE L1 0 6582 6491 6 1435 21 0 0 0 chr3 111426889 111426910 -48172873 + AT_rich Low_complexity Low_complexity 1 21 0 6 1435 276 354 75 20 chr3 111427115 111427262 -48172521 - B4 SINE B4 -137 155 1 6 1435 218 185 56 0 chr3 111427330 111427384 -48172399 + (CAAA)n Simple_repeat Simple_repeat 2 58 0 6 1435 180 0 0 0 chr3 111427384 111427404 -48172379 + (CAA)n Simple_repeat Simple_repeat 2 21 0 6 1435 254 367 30 18 chr3 111427615 111427784 -48171999 + L1MC3 LINE L1 6652 6822 -963 6 1435 4278 68 19 12 chr3 111428183 111428774 -48171009 + L1Md_F2 LINE L1 5988 6582 0 6 1435 293 0 0 26 chr3 111428850 111428888 -48170895 + (TAA)n Simple_repeat Simple_repeat 2 38 0 6 1435 25 65 0 0 chr3 111429537 111429583 -48170200 + AT_rich Low_complexity Low_complexity 1 46 0 6 1435 432 0 0 0 chr3 111430052 111430100 -48169683 + (CA)n Simple_repeat Simple_repeat 2 49 0 6 1435 337 129 29 0 chr3 111430171 111430241 -48169542 + (TATG)n Simple_repeat Simple_repeat 1 72 0 6 1435 328 445 10 28 chr3 111430288 111430577 -48169206 - B4A SINE B4 -8 284 1 6 1435 198 0 0 0 chr3 111430734 111430756 -48169027 + (CA)n Simple_repeat Simple_repeat 1 22 0 6 1435 23 33 0 0 chr3 111430861 111430891 -48168892 + AT_rich Low_complexity Low_complexity 1 30 0 6 1435 448 297 66 5 chr3 111430976 111431172 -48168611 - Lx7 LINE L1 -285 7411 7204 6 1435 1140 75 0 0 chr3 111431188 111431335 -48168448 + B1_Mm SINE Alu 1 147 0 6 1435 324 0 0 0 chr3 111431339 111431375 -48168408 + (TAAA)n Simple_repeat Simple_repeat 1 36 0 6 1435 7081 102 20 6 chr3 111431377 111432425 -48167358 + Lx3_Mus LINE L1 5923 6985 -24 6 1435 494 31 16 0 chr3 111432425 111432489 -48167294 + (TAGA)n Simple_repeat Simple_repeat 4 68 0 6 1435 721 333 11 26 chr3 111432489 111432752 -48167031 - Lx7 LINE L1 -760 6936 6675 6 1435 1127 36 0 0 chr3 111432804 111432943 -48166840 + B1_Mus1 SINE Alu 10 148 0 6 1435 249 57 0 0 chr3 111432944 111432979 -48166804 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 6 1435 1166 310 61 35 chr3 111432980 111433518 -48166265 - Lx7 LINE L1 -1077 6619 6068 6 1435 268 378 23 47 chr3 111433599 111433771 -48166012 - RMER15-int LTR ERVL -4604 395 228 6 1435 417 328 166 24 chr3 111433922 111434175 -48165608 - RMER15 LTR ERVL 0 575 287 6 1435 419 306 10 0 chr3 111434604 111434702 -48165081 + RSINE1 SINE B4 18 116 -49 6 1435 360 88 0 0 chr3 111434737 111434794 -48164989 + (CA)n Simple_repeat Simple_repeat 2 58 0 6 1435 213 216 0 0 chr3 111435803 111435840 -48163943 + (TG)n Simple_repeat Simple_repeat 2 38 0 6 1435 369 62 0 0 chr3 111436279 111436327 -48163456 + (TTTA)n Simple_repeat Simple_repeat 2 49 0 6 1435 36 94 0 0 chr3 111437030 111437136 -48162647 + AT_rich Low_complexity Low_complexity 1 106 0 6 1435 499 356 33 77 chr3 111437216 111437492 -48162291 - Lx8 LINE L1 -136 7337 7070 6 1435 1490 48 9 42 chr3 111437492 111437707 -48162076 - L1Md_F3 LINE L1 0 6584 6377 6 1435 499 356 33 77 chr3 111437707 111437911 -48161872 - Lx8 LINE L1 -404 7069 6878 6 1435 895 264 10 0 chr3 111437968 111438176 -48161607 - B3 SINE B2 -2 214 5 6 1435 1371 195 34 20 chr3 111438201 111438494 -48161289 - RMER6B LTR ERVK 0 461 165 6 1435 514 182 81 0 chr3 111438473 111438572 -48161211 + RMER6B LTR ERVK 349 455 -6 6 1435 1117 214 94 4 chr3 111438574 111438809 -48160974 + MYSERV6-int LTR ERVK 2 257 -8702 6 1435 424 194 21 11 chr3 111438815 111438909 -48160874 + ORR1B2 LTR MaLR 271 365 -2 6 1435 3601 85 10 2 chr3 111438990 111439474 -48160309 - L1_Mus2 LINE L1 0 6566 6079 6 1435 2181 104 3 0 chr3 111439474 111439778 -48160005 + L1_Mm LINE L1 5264 5568 -315 6 1435 999 0 0 0 chr3 111439878 111439989 -48159794 + (TATATG)n Simple_repeat Simple_repeat 4 114 0 6 1435 577 160 7 27 chr3 111441083 111441231 -48158552 + CT-rich Low_complexity Low_complexity 4 148 0 6 1435 321 321 44 39 chr3 111441232 111441436 -48158347 + RMER10B LTR ERVL 194 398 0 6 1435 263 169 16 39 chr3 111441454 111441540 -48158243 + T-rich Low_complexity Low_complexity 1 83 0 6 1435 27 29 0 0 chr3 111441650 111441684 -48158099 + AT_rich Low_complexity Low_complexity 1 34 0 6 1435 24 53 0 0 chr3 111441911 111441949 -48157834 + AT_rich Low_complexity Low_complexity 1 38 0 6 1435 7929 26 0 1 chr3 111442100 111443025 -48156758 - L1Md_A LINE L1 -1 6581 5658 6 1435 235 241 19 0 chr3 111443803 111443857 -48155926 - B3 SINE B2 -14 202 148 6 1435 1108 81 121 0 chr3 111444185 111444359 -48155424 + B2_Mm2 SINE B2 1 195 0 6 1435 393 292 0 155 chr3 111445554 111445696 -48154087 - PB1D9 SINE Alu 0 120 1 6 1435 24 85 0 0 chr3 111445736 111445795 -48153988 + AT_rich Low_complexity Low_complexity 1 59 0 6 1435 208 135 0 0 chr3 111447094 111447131 -48152652 + (A)n Simple_repeat Simple_repeat 1 37 0 6 1435 657 0 0 0 chr3 111447194 111447267 -48152516 + (TTTC)n Simple_repeat Simple_repeat 4 76 0 6 1435 186 191 0 0 chr3 111447473 111447515 -48152268 + (TATG)n Simple_repeat Simple_repeat 2 43 0 6 1435 715 64 9 9 chr3 111447609 111447720 -48152063 + (TG)n Simple_repeat Simple_repeat 2 112 0 6 1435 192 97 0 0 chr3 111447832 111447863 -48151920 + (TATG)n Simple_repeat Simple_repeat 2 32 0 6 1435 587 174 14 28 chr3 111448107 111448249 -48151534 - Lx2B LINE L1 0 7000 6861 6 1435 4981 174 23 11 chr3 111448252 111449226 -48150557 - Lx2B LINE L1 -311 6689 5734 6 1435 1790 227 6 3 chr3 111449228 111449594 -48150189 + ORR1B2 LTR MaLR 1 367 0 6 1435 348 161 0 0 chr3 111450004 111450066 -48149717 + (TA)n Simple_repeat Simple_repeat 2 63 0 6 1435 265 320 85 8 chr3 111450242 111450371 -48149412 - MIRb SINE MIR 0 268 130 6 1435 581 220 68 51 chr3 111450576 111450753 -48149030 + B2_Mm2 SINE B2 4 183 -12 6 1435 21 0 0 0 chr3 111452243 111452264 -48147519 + AT_rich Low_complexity Low_complexity 1 21 0 6 1435 403 318 38 0 chr3 111452335 111452467 -48147316 - B1_Mur1 SINE Alu -11 138 2 6 1435 584 294 72 53 chr3 111452620 111452924 -48146859 + MTEb LTR MaLR 69 377 -2 6 1435 34 72 0 0 chr3 111453246 111453315 -48146468 + AT_rich Low_complexity Low_complexity 1 69 0 6 1435 4034 130 59 6 chr3 111453702 111454361 -48145422 + L1_Mur1 LINE L1 5103 5796 -90 6 1435 3794 109 19 2 chr3 111454381 111454961 -48144822 - L1_Mus3 LINE L1 -1 6637 6048 6 1435 26 0 0 0 chr3 111455206 111455232 -48144551 + AT_rich Low_complexity Low_complexity 1 26 0 6 1435 342 272 106 39 chr3 111455488 111455668 -48144115 + L1MB5 LINE L1 5637 5828 -346 6 1435 277 350 80 0 chr3 111455742 111455842 -48143941 + RSINE1 SINE B4 52 159 -6 6 1435 360 0 0 0 chr3 111455849 111455889 -48143894 + (CA)n Simple_repeat Simple_repeat 2 41 0 6 1435 619 61 0 0 chr3 111455891 111455973 -48143810 + L1_Mus2 LINE L1 5856 5937 -629 6 1435 2085 91 0 13 chr3 111455973 111456275 -48143508 + L1Md_F2 LINE L1 6273 6570 -12 6 1435 239 249 125 75 chr3 111456275 111456396 -48143387 + Lx2A LINE L1 5936 6069 -939 6 1435 4367 89 15 0 chr3 111456404 111457002 -48142781 + L1_Mus2 LINE L1 5957 6563 -3 6 1435 2081 214 73 33 chr3 111457026 111457602 -48142181 + RMER6C LTR ERVK 91 689 -1 6 1435 220 104 41 20 chr3 111457622 111457671 -48142112 + (TAA)n Simple_repeat Simple_repeat 2 51 0 6 1435 32 0 0 0 chr3 111457923 111457955 -48141828 + AT_rich Low_complexity Low_complexity 1 32 0 6 1435 25 0 0 0 chr3 111458230 111458255 -48141528 + AT_rich Low_complexity Low_complexity 1 25 0 6 1435 1249 352 79 34 chr3 111458263 111458682 -48141101 + Tigger1 DNA MER2_type 75 510 -1908 7 1435 495 48 0 0 chr3 111458682 111458744 -48141039 + (TA)n Simple_repeat Simple_repeat 1 62 0 7 1435 1249 352 79 34 chr3 111458744 111459118 -48140665 + Tigger1 DNA MER2_type 511 904 -1514 7 1435 381 176 0 0 chr3 111459257 111459331 -48140452 + CT-rich Low_complexity Low_complexity 1 74 0 7 1435 4272 217 64 47 chr3 111459331 111460472 -48139311 - Lx2B LINE L1 -5 6995 5835 7 1435 406 312 116 5 chr3 111461056 111461246 -48138537 + MIR SINE MIR 49 259 -3 7 1435 582 117 0 0 chr3 111461940 111462051 -48137732 + (TC)n Simple_repeat Simple_repeat 1 111 0 7 1435 390 21 0 0 chr3 111462051 111462098 -48137685 + (TG)n Simple_repeat Simple_repeat 2 48 0 7 1435 368 280 64 18 chr3 111462099 111462208 -48137575 - PB1D9 SINE Alu -5 115 2 7 1435 183 114 0 0 chr3 111462425 111462460 -48137323 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 7 1435 231 252 27 0 chr3 111462464 111462575 -48137208 - Lx9 LINE L1 -1 7643 7530 7 1435 28 29 0 0 chr3 111463317 111463352 -48136431 + AT_rich Low_complexity Low_complexity 1 35 0 7 1435 2590 148 65 0 chr3 111463435 111463869 -48135914 + L1Md_F LINE L1 234 695 -5824 7 1435 341 286 9 0 chr3 111463993 111464098 -48135685 - Arthur1 DNA Tip100 -258 3689 3584 7 1435 3015 188 63 5 chr3 111464266 111464377 -48135406 - Lx2 LINE L1 -6 6994 6882 7 1435 180 0 0 0 chr3 111464377 111464397 -48135386 + (CCCA)n Simple_repeat Simple_repeat 2 21 0 7 1435 3015 188 63 5 chr3 111464397 111464899 -48134884 - Lx2 LINE L1 -119 6881 6346 7 1435 3015 175 9 0 chr3 111464893 111465469 -48134314 + Lx2 LINE L1 4127 4707 -1170 7 1435 2698 122 0 2 chr3 111465469 111465879 -48133904 + L1_Mus4 LINE L1 6224 6632 -4 7 1435 3567 167 50 0 chr3 111465882 111466414 -48133369 + Lx LINE L1 5981 6516 -138 7 1435 528 93 0 0 chr3 111466414 111466489 -48133294 + (TG)n Simple_repeat Simple_repeat 1 75 0 7 1435 3567 167 50 0 chr3 111466489 111466598 -48133185 + Lx LINE L1 6517 6653 -1 7 1435 7187 167 52 13 chr3 111466600 111468184 -48131599 + Lx2 LINE L1 5357 6997 0 7 1435 4003 170 15 30 chr3 111468195 111469114 -48130669 - Lx2 LINE L1 -657 6340 5431 7 1435 252 221 0 0 chr3 111469151 111469228 -48130555 + (TA)n Simple_repeat Simple_repeat 1 77 0 7 1435 403 320 90 0 chr3 111469292 111469414 -48130369 - ID_B1 SINE B4 -89 135 3 7 1435 285 407 30 41 chr3 111469560 111469729 -48130054 - Arthur1 DNA Tip100 -3438 509 343 7 1435 207 105 26 0 chr3 111469736 111469774 -48130009 + (CAAAAA)n Simple_repeat Simple_repeat 2 40 0 7 1435 285 158 35 0 chr3 111469947 111470004 -48129779 - L1_Rod LINE L1 -658 5189 5131 7 1435 1498 332 45 42 chr3 111470033 111470658 -48129125 + Lx8 LINE L1 6386 7012 -461 7 1435 336 182 0 0 chr3 111471259 111471325 -48128458 - Lx3B LINE L1 -377 6596 6531 7 1435 2205 126 7 83 chr3 111471325 111471732 -48128051 + Lx3B LINE L1 6594 6969 -4 7 1435 257 237 17 17 chr3 111471924 111471984 -48127799 - B1F SINE Alu -24 125 66 7 1435 21 36 0 0 chr3 111472998 111473026 -48126757 + AT_rich Low_complexity Low_complexity 1 28 0 7 1435 1095 284 106 12 chr3 111473927 111474529 -48125254 - L1_Rod LINE L1 -3429 2418 1760 7 1435 755 59 0 0 chr3 111474564 111474666 -48125117 - B1_Mm SINE Alu -45 102 1 7 1435 500 200 14 126 chr3 111474666 111474707 -48125076 - MT2B LTR ERVL -344 257 131 7 1435 1080 89 7 0 chr3 111475013 111475150 -48124633 + B1_Mus1 SINE Alu 2 139 -9 7 1435 222 62 0 0 chr3 111475150 111475182 -48124601 + (CACAA)n Simple_repeat Simple_repeat 4 35 0 7 1435 21 0 0 0 chr3 111475716 111475737 -48124046 + AT_rich Low_complexity Low_complexity 1 21 0 7 1435 3231 122 6 2 chr3 111476431 111476965 -48122818 - L1_Mur1 LINE L1 -3836 2050 1515 7 1435 504 75 0 0 chr3 111476965 111477032 -48122751 + RLTR10B2 LTR ERVK 2 68 -297 7 1435 1067 62 0 7 chr3 111477027 111477174 -48122609 + RLTR10B2 LTR ERVK 220 365 0 7 1435 1762 131 7 0 chr3 111477174 111477603 -48122180 - L1_Mur1 LINE L1 -4365 1521 1023 7 1435 646 147 0 17 chr3 111477787 111477905 -48121878 - Lx LINE L1 0 6654 6539 7 1435 237 163 0 0 chr3 111478138 111478187 -48121596 + GA-rich Low_complexity Low_complexity 3 51 0 7 1435 1007 147 6 0 chr3 111478213 111478390 -48121393 + GA-rich Low_complexity Low_complexity 3 180 0 7 1435 1454 159 33 0 chr3 111478465 111478736 -48121047 - Lx2 LINE L1 0 6997 6718 7 1435 1034 54 0 0 chr3 111479355 111479485 -48120298 - B1_Mm SINE Alu -8 139 10 7 1435 257 296 14 32 chr3 111479597 111479766 -48120017 + Lx7 LINE L1 5694 5893 -1803 7 1435 22 0 0 0 chr3 111479793 111479815 -48119968 + AT_rich Low_complexity Low_complexity 1 22 0 7 1435 195 69 0 0 chr3 111479976 111480005 -48119778 + (CAAAAA)n Simple_repeat Simple_repeat 6 34 0 7 1435 2031 132 23 0 chr3 111480253 111480563 -48119220 - ORR1A2 LTR MaLR 0 327 11 7 1435 262 68 26 64 chr3 111480576 111480654 -48119129 + T-rich Low_complexity Low_complexity 2 76 0 7 1435 722 250 84 77 chr3 111480734 111481148 -48118635 - RMER2 LTR ERV1 -51 516 1 7 1435 1122 176 54 58 chr3 111481296 111481537 -48118246 - L1VL2 LINE L1 -5936 399 1 7 1435 671 299 48 0 chr3 111481741 111481928 -48117855 - B3 SINE B2 0 216 21 7 1435 227 208 0 0 chr3 111482851 111482899 -48116884 + A-rich Low_complexity Low_complexity 1 48 0 7 1435 33 43 0 0 chr3 111484229 111484276 -48115507 + AT_rich Low_complexity Low_complexity 1 47 0 7 1435 988 128 0 0 chr3 111484367 111484515 -48115268 - B1_Mus1 SINE Alu 0 148 1 7 1435 1590 98 0 0 chr3 111485384 111485609 -48114174 - L1_Mm LINE L1 -1406 4477 4253 7 1435 7406 164 4 0 chr3 111485606 111485735 -48114048 + L1_Mus3 LINE L1 4601 4729 -1154 7 1435 423 0 0 0 chr3 111485735 111485782 -48114001 + (CAAAA)n Simple_repeat Simple_repeat 4 50 0 7 1435 7406 130 6 1 chr3 111485782 111487677 -48112106 + L1_Mus3 LINE L1 4730 6633 -5 7 1435 192 77 0 0 chr3 111487729 111487755 -48112028 + (TATG)n Simple_repeat Simple_repeat 3 28 0 7 1435 203 88 0 29 chr3 111487845 111487880 -48111903 + (GAAA)n Simple_repeat Simple_repeat 3 36 0 7 1435 1041 117 0 0 chr3 111488407 111488552 -48111231 - B1_Mm SINE Alu -2 145 1 7 1435 29 0 0 0 chr3 111489030 111489059 -48110724 + AT_rich Low_complexity Low_complexity 1 29 0 7 1435 40062 3 0 0 chr3 111489085 111494336 -48105447 - L1Md_A LINE L1 0 6582 1331 7 1435 2298 4 4 8 chr3 111494329 111494597 -48105186 - L1Md_A LINE L1 -5927 797 531 7 1435 11382 11 1 1 chr3 111494602 111495909 -48103874 - L1Md_A LINE L1 -5400 1324 18 7 1435 3962 62 0 0 chr3 111495907 111496408 -48103375 - L1Md_F2 LINE L1 -30 6552 6052 7 1435 369 0 0 0 chr3 111496483 111496524 -48103259 + (TTTTG)n Simple_repeat Simple_repeat 2 42 0 7 1435 382 204 19 0 chr3 111496599 111496707 -48103076 + (TA)n Simple_repeat Simple_repeat 1 110 0 7 1435 183 80 0 0 chr3 111497676 111497701 -48102082 + (TTTA)n Simple_repeat Simple_repeat 4 28 0 7 1435 4059 267 31 9 chr3 111497701 111498749 -48101034 - Lx5 LINE L1 -22 7028 5958 7 1435 206 211 0 0 chr3 111500013 111500051 -48099732 + (CA)n Simple_repeat Simple_repeat 1 38 0 1 1435 219 192 13 52 chr3 111500190 111500247 -48099536 + T-rich Low_complexity Low_complexity 21 75 0 2 1435 246 32 0 0 chr3 111500247 111500278 -48099505 + (TC)n Simple_repeat Simple_repeat 2 32 0 3 1435 6622 139 41 21 chr3 111500278 111501445 -48098338 - Lx3B LINE L1 -8 6965 5775 4 1435 219 192 13 52 chr3 111501445 111501463 -48098320 + T-rich Low_complexity Low_complexity 3 20 0 5 1435 23 0 0 0 chr3 111501956 111501979 -48097804 + AT_rich Low_complexity Low_complexity 1 23 0 6 1435 362 400 0 6 chr3 111502957 111503113 -48096670 - RSINE1 SINE B4 -7 158 4 7 1435 22 35 0 0 chr3 111503352 111503381 -48096402 + AT_rich Low_complexity Low_complexity 1 29 0 8 1435 7497 142 25 33 chr3 111504280 111505780 -48094003 - Lx3C LINE L1 -1039 5937 4460 9 1435 4961 151 74 19 chr3 111505781 111506742 -48093041 + Lx3C LINE L1 5961 6974 -2 9 1435 21 0 0 0 chr3 111507568 111507589 -48092194 + AT_rich Low_complexity Low_complexity 1 21 0 1 1435 236 180 44 22 chr3 111508493 111508584 -48091199 + (TA)n Simple_repeat Simple_repeat 2 94 0 1 1435 4315 155 53 5 chr3 111509015 111509801 -48089982 - Lx LINE L1 -7 6647 5824 1 1435 5111 154 34 7 chr3 111509802 111511057 -48088726 + Lx LINE L1 4857 6155 -499 1 1435 6976 36 1 0 chr3 111511057 111511918 -48087865 + L1Md_T LINE L1 5743 6582 0 1 1435 3110 179 13 0 chr3 111511925 111512540 -48087243 + L1_Mur2 LINE L1 3843 4465 -1412 1 1435 5864 135 9 6 chr3 111512689 111513638 -48086145 + Lx3A LINE L1 6030 6981 0 1 1435 24 0 0 0 chr3 111513642 111513666 -48086117 + AT_rich Low_complexity Low_complexity 1 24 0 1 1435 267 309 109 16 chr3 111513708 111513836 -48085947 + RLTR28B LTR ERVL 1 140 -341 1 1435 2078 152 6 0 chr3 111513837 111514185 -48085598 + Lx2B LINE L1 6225 6574 -426 1 1435 6995 35 6 8 chr3 111515419 111516277 -48083506 - L1Md_F3 LINE L1 0 6584 5729 2 1435 6420 128 26 22 chr3 111516260 111517568 -48082215 - L1_Mus3 LINE L1 -19 6619 5285 2 1435 1182 73 0 6 chr3 111517568 111517733 -48082050 - L1Md_F2 LINE L1 -14 6568 6405 2 1435 6305 163 15 60 chr3 111517733 111518398 -48081385 - L1_Mus3 LINE L1 -599 5284 4678 2 1435 485 239 35 48 chr3 111518398 111518543 -48081240 - B1_Mus2 SINE Alu -4 143 1 2 1435 6305 163 15 60 chr3 111518543 111518557 -48081226 - L1_Mus3 LINE L1 -1206 4677 4668 2 1435 34 0 0 0 chr3 111518636 111518670 -48081113 + AT_rich Low_complexity Low_complexity 1 34 0 2 1435 206 233 0 0 chr3 111518797 111518840 -48080943 + (TTTG)n Simple_repeat Simple_repeat 4 46 0 2 1435 22 56 0 0 chr3 111519402 111519438 -48080345 + AT_rich Low_complexity Low_complexity 1 36 0 2 1435 189 0 0 0 chr3 111519512 111519533 -48080250 + (TA)n Simple_repeat Simple_repeat 1 21 0 2 1435 279 269 28 34 chr3 111519563 111519740 -48080043 + (TA)n Simple_repeat Simple_repeat 2 177 0 2 1435 21 0 0 0 chr3 111519745 111519766 -48080017 + AT_rich Low_complexity Low_complexity 1 21 0 2 1435 414 146 21 10 chr3 111520500 111520597 -48079186 + (TA)n Simple_repeat Simple_repeat 1 98 0 2 1435 213 242 16 16 chr3 111520699 111520762 -48079021 + (TATG)n Simple_repeat Simple_repeat 4 66 0 3 1435 1711 81 17 0 chr3 111520996 111521230 -48078553 + L1_Mus1 LINE L1 6330 6567 0 3 1435 579 117 0 0 chr3 111521325 111521428 -48078355 + (TTCC)n Simple_repeat Simple_repeat 3 105 0 3 1435 7189 99 12 7 chr3 111522401 111523448 -48076335 - Lx3_Mus LINE L1 0 7009 5957 3 1435 22 0 0 0 chr3 111524336 111524358 -48075425 + AT_rich Low_complexity Low_complexity 1 22 0 3 1435 4929 189 39 13 chr3 111524450 111525647 -48074136 - Lx5 LINE L1 -607 5975 4733 3 1435 27 0 0 0 chr3 111525881 111525908 -48073875 + AT_rich Low_complexity Low_complexity 1 27 0 3 1435 180 0 0 0 chr3 111526005 111526025 -48073758 + (T)n Simple_repeat Simple_repeat 1 20 0 3 1435 6890 197 41 2 chr3 111526043 111527531 -48072252 - Lx4B LINE L1 -2 7056 5504 3 1435 803 217 55 6 chr3 111527558 111527739 -48072044 + RMER12 LTR ERVK 144 333 -989 3 1435 2885 75 58 2 chr3 111527740 111528154 -48071629 + L1Md_T LINE L1 416 852 -5872 4 1435 26520 24 136 1 chr3 111528131 111531571 -48068212 + L1Md_T LINE L1 1682 5586 -297 4 1435 8343 39 0 0 chr3 111531571 111532567 -48067216 + L1Md_T LINE L1 5587 6582 0 4 1435 2959 250 50 23 chr3 111532567 111533009 -48066774 + RMER12 LTR ERVK 321 767 -555 3 1435 450 79 0 0 chr3 111533009 111533072 -48066711 + (TCCA)n Simple_repeat Simple_repeat 1 63 0 4 1435 2959 259 80 40 chr3 111533072 111533600 -48066183 + RMER12 LTR ERVK 768 1808 0 3 1435 2095 204 35 4 chr3 111533600 111534059 -48065724 - Lx4B LINE L1 -369 5508 5036 3 1435 4246 164 75 11 chr3 111534056 111534821 -48064962 + L1_Mur2 LINE L1 4035 4816 -1061 4 1435 180 77 0 0 chr3 111534821 111534847 -48064936 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 4 1435 4246 164 75 11 chr3 111534847 111534937 -48064846 + L1_Mur2 LINE L1 4817 4944 -933 4 1435 189 171 0 0 chr3 111535455 111535490 -48064293 + (TA)n Simple_repeat Simple_repeat 2 36 0 4 1435 1294 13 0 0 chr3 111535586 111535741 -48064042 + B2_Mm1a SINE B2 2 156 -37 4 1435 450 0 0 0 chr3 111535741 111535791 -48063992 + (TAAA)n Simple_repeat Simple_repeat 3 52 0 4 1435 1068 88 0 0 chr3 111536599 111536735 -48063048 + B1_Mm SINE Alu 2 137 -10 4 1435 405 0 0 0 chr3 111536735 111536780 -48063003 + (TAAA)n Simple_repeat Simple_repeat 2 46 0 4 1435 854 77 0 58 chr3 111536780 111536918 -48062865 + L1_Mus2 LINE L1 6436 6565 -1 4 1435 301 367 18 76 chr3 111537300 111537471 -48062312 - RSINE1 SINE B4 0 165 5 5 1435 21 36 0 0 chr3 111537725 111537753 -48062030 + AT_rich Low_complexity Low_complexity 1 28 0 5 1435 31 26 0 0 chr3 111537961 111537999 -48061784 + AT_rich Low_complexity Low_complexity 1 38 0 5 1435 21 0 0 0 chr3 111539310 111539331 -48060452 + AT_rich Low_complexity Low_complexity 1 21 0 5 1435 6428 246 39 19 chr3 111539446 111541285 -48058498 - Lx5 LINE L1 -3 7047 5187 5 1435 4604 67 36 36 chr3 111541285 111541931 -48057852 - L1Md_F2 LINE L1 -11 6571 5926 5 1435 5189 259 107 53 chr3 111541931 111542191 -48057592 - Lx5 LINE L1 -694 5186 4855 5 179 5449 39 1 0 chr3 111542191 111542851 -48056932 - L1Md_T LINE L1 0 6582 5922 5 1436 5189 259 107 53 chr3 111542851 111544568 -48055215 - Lx5 LINE L1 -1026 4854 3073 5 1436 22 70 0 0 chr3 111544680 111544723 -48055060 + AT_rich Low_complexity Low_complexity 1 43 0 5 1436 1011 141 29 91 chr3 111544974 111545216 -48054567 + L1_Mur2 LINE L1 1956 2182 -3695 5 1436 4617 194 12 46 chr3 111545210 111546044 -48053739 + L1_Mus3 LINE L1 394 1224 -5410 5 1436 1038 104 14 7 chr3 111546044 111546189 -48053594 + B1_Mm SINE Alu 2 147 0 6 1436 20424 166 20 9 chr3 111546189 111550119 -48049664 + L1_Mus3 LINE L1 1225 5172 -711 5 1436 1269 210 0 0 chr3 111550118 111550351 -48049432 + L1Md_F2 LINE L1 398 630 -5986 6 1436 27837 92 58 30 chr3 111550347 111555277 -48044506 + L1Md_F2 LINE L1 503 5575 -308 6 1436 7040 87 10 23 chr3 111555281 111556290 -48043493 + L1Md_F2 LINE L1 5587 6582 0 6 1436 6339 123 37 7 chr3 111556497 111557185 -48042598 + L1_Mus3 LINE L1 5162 5858 -780 5 1436 342 0 0 0 chr3 111557185 111557223 -48042560 + (CA)n Simple_repeat Simple_repeat 1 38 0 6 1436 6339 101 63 5 chr3 111557223 111558013 -48041770 + L1_Mus3 LINE L1 5859 6638 0 5 1436 3764 211 55 14 chr3 111558044 111558827 -48040956 + RMER13B LTR ERVK 1 815 -93 6 1436 463 149 0 22 chr3 111558852 111558941 -48040842 - Lx2B LINE L1 -585 6415 6329 6 1436 343 194 0 16 chr3 111558943 111559006 -48040777 - RMER13B LTR ERVK 0 908 847 6 1436 399 231 33 0 chr3 111559007 111559098 -48040685 + Lx2B LINE L1 6589 6682 -318 6 1436 450 0 0 0 chr3 111559098 111559148 -48040635 + (TA)n Simple_repeat Simple_repeat 2 51 0 6 1436 29 47 0 0 chr3 111559317 111559360 -48040423 + AT_rich Low_complexity Low_complexity 1 43 0 6 1436 25 0 0 0 chr3 111560613 111560638 -48039145 + AT_rich Low_complexity Low_complexity 1 25 0 6 1436 1501 153 58 68 chr3 111560653 111560948 -48038835 - ORR1A3 LTR MaLR -8 318 27 7 1436 1792 286 66 45 chr3 111562082 111562814 -48036969 + Lx7 LINE L1 6796 7542 -154 7 1436 180 176 0 0 chr3 111563225 111563259 -48036524 + (CATATA)n Simple_repeat Simple_repeat 2 35 0 7 1436 4583 112 8 16 chr3 111563270 111563297 -48036486 - L1_Mur1 LINE L1 -865 5021 4996 7 1436 3596 132 13 5 chr3 111563297 111563853 -48035930 - Lx3A LINE L1 -10 6971 6412 7 1436 4583 112 8 16 chr3 111563853 111564576 -48035207 - L1_Mur1 LINE L1 -891 4995 4278 7 1436 37925 44 1 3 chr3 111564576 111570917 -48028866 - L1Md_T LINE L1 0 6585 162 7 1436 2322 139 2 19 chr3 111570918 111571336 -48028447 - L1_Mur1 LINE L1 -1597 4289 3879 7 1436 28 61 0 0 chr3 111571621 111571670 -48028113 + AT_rich Low_complexity Low_complexity 1 49 0 7 1436 289 375 21 35 chr3 111572455 111572596 -48027187 + Lx6 LINE L1 7085 7223 -237 7 1436 2385 296 82 26 chr3 111573758 111574937 -48024846 + Lx6 LINE L1 5920 7401 -59 7 1436 309 258 0 0 chr3 111574975 111575068 -48024715 + A-rich Low_complexity Low_complexity 1 93 0 7 1436 711 0 0 0 chr3 111575068 111575147 -48024636 + (GGAAA)n Simple_repeat Simple_repeat 3 81 0 8 1436 7435 170 33 6 chr3 111575147 111576689 -48023094 + Lx2 LINE L1 5413 6996 -1 8 1436 1915 205 26 135 chr3 111576695 111577427 -48022356 + Lx3B LINE L1 5359 6041 -541 8 1436 23 54 0 0 chr3 111577644 111577681 -48022102 + AT_rich Low_complexity Low_complexity 1 37 0 8 1436 240 86 0 0 chr3 111578930 111578965 -48020818 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 8 1436 23 68 0 0 chr3 111579005 111579049 -48020734 + AT_rich Low_complexity Low_complexity 1 44 0 8 1436 240 86 0 0 chr3 111579611 111579646 -48020137 + (CA)n Simple_repeat Simple_repeat 2 36 0 8 1436 1485 296 52 7 chr3 111579824 111580418 -48019365 - Lx6 LINE L1 -26 7434 6525 8 1436 1269 85 0 0 chr3 111580418 111580594 -48019189 + (TTCTC)n Simple_repeat Simple_repeat 2 177 0 8 1436 287 301 72 79 chr3 111580673 111581077 -48018706 - Tigger2b DNA MER2_type -319 407 7 8 1436 268 290 135 56 chr3 111581111 111581378 -48018405 + L1M5 LINE L1 5436 5723 -610 9 1436 1503 257 77 49 chr3 111581581 111582048 -48017735 + RMER19C LTR ERVK 1 480 -131 9 1436 1234 66 0 0 chr3 111582050 111582216 -48017567 + L1_Mus2 LINE L1 6400 6565 -1 9 1436 26 30 0 0 chr3 111582312 111582345 -48017438 + AT_rich Low_complexity Low_complexity 1 33 0 9 1436 839 70 18 0 chr3 111582383 111582497 -48017286 - RMER17B LTR ERVK -831 127 12 9 1436 800 215 34 6 chr3 111582498 111582676 -48017107 - L1_Mur1 LINE L1 -831 5055 4873 9 1436 3128 161 24 24 chr3 111582671 111583251 -48016532 + Lx2B LINE L1 5711 6290 -710 9 1436 35 101 0 0 chr3 111583294 111583413 -48016370 + AT_rich Low_complexity Low_complexity 1 119 0 9 1436 2030 192 60 42 chr3 111583460 111583910 -48015873 - Lx4B LINE L1 -8 7050 6593 9 1436 1840 78 19 4 chr3 111583914 111584183 -48015600 - IAPEY2_LTR LTR ERVK -53 304 32 9 1436 5596 176 29 7 chr3 111584193 111585771 -48014012 - Lx4B LINE L1 -448 6610 4982 9 1436 606 93 0 0 chr3 111586305 111586391 -48013392 + (TTTC)n Simple_repeat Simple_repeat 4 89 0 1 1436 390 302 24 8 chr3 111586798 111586929 -48012854 + MTC LTR MaLR 233 406 -15 1 1436 3466 76 2 7 chr3 111586933 111587397 -48012386 - L1Md_F3 LINE L1 -196 5687 5226 1 1436 1170 28 0 7 chr3 111587394 111587537 -48012246 + L1Md_F3 LINE L1 5667 5808 -776 1 1436 5386 45 3 1 chr3 111587537 111588201 -48011582 + L1Md_F3 LINE L1 5919 6583 -1 1 1436 1090 95 0 6 chr3 111588201 111588216 -48011567 + L1_Mus3 LINE L1 5809 5823 -815 1 1436 442 318 149 16 chr3 111588844 111589279 -48010504 + L1M4 LINE L1 4367 4859 -1287 1 1436 4595 116 21 10 chr3 111589334 111590049 -48009734 - Lx3A LINE L1 -3 6978 6256 1 1436 3325 184 18 22 chr3 111590049 111590736 -48009047 - Lx2 LINE L1 -409 6588 5905 1 1436 321 68 0 0 chr3 111590745 111590789 -48008994 + (TG)n Simple_repeat Simple_repeat 1 44 0 1 1436 33 25 0 0 chr3 111591069 111591109 -48008674 + AT_rich Low_complexity Low_complexity 1 40 0 1 1436 3175 165 42 3 chr3 111591201 111591780 -48008003 - Lx2A1 LINE L1 -5 7003 6403 1 1436 745 291 120 0 chr3 111592186 111592544 -48007239 - Lx9 LINE L1 -222 7422 7022 1 1436 617 218 52 8 chr3 111592845 111592979 -48006804 + B1_Mus1 SINE Alu 2 141 -7 1 1436 214 173 38 19 chr3 111593095 111593148 -48006635 + (CATATA)n Simple_repeat Simple_repeat 3 56 0 1 1436 783 312 73 7 chr3 111594882 111595156 -48004627 - RMER15 LTR ERVL -115 460 169 1 1436 471 82 0 0 chr3 111595921 111595994 -48003789 + (TA)n Simple_repeat Simple_repeat 1 73 0 1 1436 1959 128 3 84 chr3 111596922 111597289 -48002494 - IAPLTR1a_Mm LTR ERVK 0 337 1 1 1436 26727 9 1 0 chr3 111597289 111600243 -47999540 - IAPEz-int LTR ERVK 0 6481 3525 1 1436 932 73 24 0 chr3 111600243 111600366 -47999417 - IAPEz-int LTR ERVK -2770 4910 4785 1 1436 1849 111 4 4 chr3 111600363 111600625 -47999158 - IAPEz-int LTR ERVK -5183 2497 2236 1 1436 442 66 0 32 chr3 111600614 111600677 -47999106 - IAPEz-int LTR ERVK -5062 1419 1359 1 1436 5048 38 25 16 chr3 111600677 111601317 -47998466 - IAPEz-int LTR ERVK -5819 662 17 1 1436 2320 126 64 55 chr3 111601340 111601587 -47998196 - IAPLTR2_Mm LTR ERVK 0 475 221 1 1436 414 0 0 0 chr3 111601587 111601633 -47998150 + (GA)n Simple_repeat Simple_repeat 1 46 0 1 1436 2320 126 64 55 chr3 111601633 111601856 -47997927 - IAPLTR2_Mm LTR ERVK -255 220 1 1 1436 618 82 0 0 chr3 111601926 111602011 -47997772 + (TA)n Simple_repeat Simple_repeat 1 85 0 1 1436 315 0 0 0 chr3 111602463 111602498 -47997285 + (TG)n Simple_repeat Simple_repeat 2 36 0 1 1436 256 345 11 0 chr3 111603537 111603624 -47996159 + Lx8 LINE L1 7191 7278 -195 1 1436 214 179 18 18 chr3 111604111 111604168 -47995615 + CT-rich Low_complexity Low_complexity 5 61 0 1 1436 423 0 0 0 chr3 111604176 111604223 -47995560 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 1436 378 212 162 0 chr3 111604617 111604671 -47995112 - RMER17C LTR ERVK -136 274 198 1 1436 423 0 0 0 chr3 111604671 111604718 -47995065 + (TAGA)n Simple_repeat Simple_repeat 2 48 0 1 1436 378 212 162 0 chr3 111604718 111604823 -47994960 - RMER17C LTR ERVK -213 197 90 1 1436 1471 308 9 20 chr3 111604832 111605283 -47994500 - Lx9 LINE L1 -893 6751 6306 1 1436 26 30 0 0 chr3 111606550 111606583 -47993200 + AT_rich Low_complexity Low_complexity 1 33 0 1 1436 1055 53 0 1 chr3 111607077 111607215 -47992568 + L1Md_T LINE L1 5463 5615 -559 1 1436 8361 37 0 0 chr3 111607215 111608210 -47991573 + L1Md_T LINE L1 5587 6581 -1 1 1436 610 154 8 8 chr3 111608742 111608873 -47990910 + GA-rich Low_complexity Low_complexity 4 134 0 1 1436 1557 39 0 4 chr3 111608867 111609121 -47990662 + (GGGAA)n Simple_repeat Simple_repeat 1 253 0 1 1436 529 355 58 21 chr3 111609670 111609902 -47989881 - Lx9 LINE L1 -619 7025 6787 1 1436 3246 43 8 0 chr3 111609902 111610296 -47989487 - L1Md_F3 LINE L1 -14 6570 6174 1 1436 529 355 58 21 chr3 111610296 111610495 -47989288 - Lx9 LINE L1 -858 6786 6579 1 1436 2379 220 29 82 chr3 111610637 111611712 -47988071 + L1_Mur2 LINE L1 924 2027 -3850 1 1436 1967 227 32 2 chr3 111611706 111612178 -47987605 - L1_Mur2 LINE L1 -1359 4518 4033 1 1436 22 0 0 0 chr3 111612187 111612209 -47987574 + AT_rich Low_complexity Low_complexity 1 22 0 1 1436 3371 178 33 39 chr3 111612748 111613542 -47986241 - L1_Mur2 LINE L1 -1844 4033 3245 1 1436 305 318 54 43 chr3 111613718 111613902 -47985881 - Lx6 LINE L1 0 7460 7275 1 1436 632 286 56 48 chr3 111613867 111614273 -47985510 + Lx5 LINE L1 6125 6765 -695 1 1436 198 0 0 0 chr3 111614698 111614720 -47985063 + (TTTG)n Simple_repeat Simple_repeat 3 24 0 1 1436 809 294 57 11 chr3 111615008 111615290 -47984493 - MER2 DNA MER2_type -10 335 41 1 1436 534 16 0 0 chr3 111615741 111615804 -47983979 + (TTTA)n Simple_repeat Simple_repeat 2 64 0 1 1436 975 73 0 22 chr3 111615804 111615943 -47983840 - B1_Mm SINE Alu -10 137 2 1 1436 388 287 48 10 chr3 111616336 111616465 -47983318 - B1_Mur2 SINE Alu -5 144 1 1 1436 349 273 9 0 chr3 111616576 111616686 -47983097 - Lx7 LINE L1 -17 7679 7569 1 1436 186 43 0 0 chr3 111616705 111616728 -47983055 + (TAAAA)n Simple_repeat Simple_repeat 3 25 0 1 1436 270 279 18 53 chr3 111616810 111616980 -47982803 - Lx7 LINE L1 -202 7494 7331 1 1436 1384 199 45 92 chr3 111616978 111617337 -47982446 + RMER1C Other Other 850 1191 -151 1 1436 717 175 32 12 chr3 111617355 111617608 -47982175 + CT-rich Low_complexity Low_complexity 1 258 0 1 1436 251 212 47 12 chr3 111617634 111617720 -47982063 + RMER1C Other Other 1254 1342 0 1 1436 1191 273 61 0 chr3 111617720 111618083 -47981700 - Lx7 LINE L1 -582 7114 6730 1 1436 974 289 14 11 chr3 111618077 111618364 -47981419 + Lx7 LINE L1 6478 6765 -931 1 1436 595 197 20 26 chr3 111618403 111618554 -47981229 - Lx7 LINE L1 -1260 6436 6287 1 1436 21 0 0 0 chr3 111619360 111619381 -47980402 + AT_rich Low_complexity Low_complexity 1 21 0 1 1436 21 0 0 0 chr3 111620760 111620781 -47979002 + AT_rich Low_complexity Low_complexity 1 21 0 1 1436 939 233 9 22 chr3 111621602 111621834 -47977949 - RMER19B LTR ERVK 0 902 674 1 1436 4038 231 22 92 chr3 111621881 111623180 -47976603 - Lx7 LINE L1 -75 5805 4597 1 1436 5842 194 36 7 chr3 111623180 111624368 -47975415 + Lx2B LINE L1 5778 7000 0 1 1436 789 184 0 0 chr3 111624375 111624533 -47975250 + GA-rich Low_complexity Low_complexity 2 159 0 1 1436 1185 192 40 197 chr3 111624533 111624980 -47974803 - RMER19C LTR ERVK -234 377 1 1 1436 255 61 0 0 chr3 111625099 111625132 -47974651 + (CA)n Simple_repeat Simple_repeat 2 34 0 1 1436 23 33 0 0 chr3 111625500 111625530 -47974253 + AT_rich Low_complexity Low_complexity 1 30 0 1 1436 307 355 23 62 chr3 111625774 111625951 -47973832 + B4A SINE B4 5 174 -118 1 1436 25 31 0 0 chr3 111626031 111626063 -47973720 + AT_rich Low_complexity Low_complexity 1 32 0 1 1436 3069 131 18 0 chr3 111626303 111626793 -47972990 + Lx3A LINE L1 6481 6979 -2 1 1436 729 75 0 0 chr3 111626897 111626991 -47972792 + Lx3_Mus LINE L1 6500 6593 -416 1 1436 1095 89 0 0 chr3 111627141 111627287 -47972496 - B1_Mm SINE Alu 0 147 2 1 1436 302 378 0 40 chr3 111627371 111627387 -47972396 + ID_B1 SINE B4 70 212 -12 1 1436 696 233 0 0 chr3 111627387 111627520 -47972263 + B1_Mur4 SINE Alu 6 138 -12 1 1436 323 332 30 65 chr3 111627658 111627858 -47971925 - ORR1E LTR MaLR -6 353 161 1 1436 577 258 45 8 chr3 111627896 111628029 -47971754 - MTE-int LTR MaLR -1155 425 288 1 1436 21 0 0 0 chr3 111628516 111628537 -47971246 + AT_rich Low_complexity Low_complexity 1 21 0 1 1436 369 43 0 0 chr3 111629264 111629311 -47970472 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 1436 30 0 0 0 chr3 111630066 111630096 -47969687 + AT_rich Low_complexity Low_complexity 1 30 0 1 1436 192 40 0 0 chr3 111630142 111630167 -47969616 + (TG)n Simple_repeat Simple_repeat 2 26 0 1 1436 250 351 60 22 chr3 111630203 111630337 -47969446 - B4A SINE B4 -12 280 142 1 1436 339 130 0 0 chr3 111631067 111631121 -47968662 + (TG)n Simple_repeat Simple_repeat 1 54 0 1 1436 254 294 8 93 chr3 111631132 111631273 -47968510 - B3 SINE B2 -30 165 37 1 1436 2949 110 11 9 chr3 111631658 111632116 -47967667 + L1_Mus3 LINE L1 6173 6631 -7 1 1436 408 20 0 0 chr3 111632138 111632187 -47967596 + (TAAA)n Simple_repeat Simple_repeat 3 51 0 1 1436 35551 49 24 3 chr3 111633156 111638323 -47961460 + L1Md_T LINE L1 331 5587 -296 1 1436 7993 53 0 0 chr3 111638324 111639317 -47960466 + L1Md_T LINE L1 5589 6581 -1 1 1436 238 290 186 0 chr3 111639673 111639797 -47959986 - L1M5 LINE L1 -403 5776 5630 1 1436 387 0 0 0 chr3 111639966 111640009 -47959774 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 1436 403 315 104 70 chr3 111640229 111640669 -47959114 - L1MD LINE L1 -2933 3213 2759 1 1436 294 182 0 0 chr3 111640714 111640780 -47959003 + T-rich Low_complexity Low_complexity 1 66 0 1 1436 8400 124 27 6 chr3 111641537 111642935 -47956848 - MusHAL1 LINE L1 -750 1962 536 1 1436 6088 179 14 3 chr3 111642933 111644135 -47955648 + L1_Mur2 LINE L1 3170 4384 -1493 1 1436 3188 44 0 0 chr3 111644124 111644513 -47955270 - L1Md_T LINE L1 -425 6157 5769 1 1436 3608 49 2 4 chr3 111644513 111644967 -47954816 + L1Md_T LINE L1 6130 6582 0 1 1436 1192 137 61 0 chr3 111644996 111645208 -47954575 + L1_Mm LINE L1 4367 4591 -1292 1 1436 22 0 0 0 chr3 111645711 111645733 -47954050 + AT_rich Low_complexity Low_complexity 1 22 0 1 1436 1638 184 17 28 chr3 111645749 111646102 -47953681 + Lx2B LINE L1 4058 4406 -1471 1 1436 5472 195 21 11 chr3 111646113 111647631 -47952152 + Lx2B LINE L1 4789 6326 -674 1 1436 4200 135 21 80 chr3 111647620 111648204 -47951579 - Lx LINE L1 -183 6471 5882 1 1436 436 0 0 0 chr3 111648204 111648254 -47951529 - MTB LTR MaLR 0 400 351 1 1436 7497 92 19 5 chr3 111648254 111649337 -47950446 - MTA_Mm-int LTR MaLR 0 1098 1 1 1436 3076 48 10 8 chr3 111649337 111649732 -47950051 - MTA_Mm LTR MaLR 0 396 1 1 1436 4200 135 21 80 chr3 111649732 111649868 -47949915 - Lx LINE L1 -773 5881 5747 1 1436 245 354 46 5 chr3 111649965 111650181 -47949602 + L1M4 LINE L1 5545 5769 -409 1 1436 325 224 0 43 chr3 111651226 111651296 -47948487 + B3 SINE B2 3 69 -147 1 1436 24 0 0 0 chr3 111652159 111652183 -47947600 + AT_rich Low_complexity Low_complexity 1 24 0 1 1436 242 316 105 0 chr3 111652357 111652433 -47947350 + B1F SINE Alu 1 84 -65 1 1436 887 279 57 4 chr3 111653344 111653592 -47946191 + MTD LTR MaLR 14 274 -145 1 1436 195 69 0 0 chr3 111653894 111653923 -47945860 + (TTTA)n Simple_repeat Simple_repeat 3 31 0 1 1436 3714 189 46 40 chr3 111654139 111654972 -47944811 + RMER12 LTR ERVK 1 838 -484 1 1436 545 163 246 22 chr3 111655015 111655153 -47944630 - ORR1A4 LTR MaLR 0 329 161 1 1436 3202 184 48 28 chr3 111655155 111655837 -47943946 - RLTR25B LTR ERVK -330 698 3 1 1436 228 270 11 22 chr3 111656766 111656857 -47942926 - L1M4 LINE L1 -2572 3574 3485 1 1436 349 303 103 65 chr3 111656857 111656927 -47942856 - L1M2 LINE L1 -2825 3318 3257 1 1436 3457 123 209 24 chr3 111656927 111657387 -47942396 - RMER17A2 LTR ERVK 0 906 338 1 1436 558 0 0 0 chr3 111657387 111657449 -47942334 + (GA)n Simple_repeat Simple_repeat 1 62 0 1 1436 3457 123 209 24 chr3 111657449 111657752 -47942031 - RMER17A2 LTR ERVK -569 337 2 1 1436 349 303 103 65 chr3 111657752 111658002 -47941781 - L1M2 LINE L1 -2887 3256 2986 1 1436 2030 196 21 92 chr3 111658131 111658693 -47941090 - RMER6D LTR ERVK -195 525 4 1 1436 381 22 0 0 chr3 111658861 111658907 -47940876 + (TG)n Simple_repeat Simple_repeat 2 47 0 2 1436 186 208 0 0 chr3 111659031 111659079 -47940704 + (TG)n Simple_repeat Simple_repeat 1 48 0 2 1436 327 287 10 31 chr3 111659269 111659366 -47940417 - B1_Mur1 SINE Alu -19 130 36 2 1436 419 220 135 8 chr3 111660094 111660227 -47939556 - LTR41 LTR ERVL 0 768 619 2 1436 2594 106 37 5 chr3 111660778 111661186 -47938597 - BGLII LTR ERVK 0 421 1 2 1436 3729 112 14 3 chr3 111661604 111662168 -47937615 - L1_Mus3 LINE L1 -9 6629 6060 2 1436 545 208 0 0 chr3 111662168 111662269 -47937514 + L1VL1 LINE L1 200 300 -6122 2 1436 1071 293 57 25 chr3 111662412 111662815 -47936968 - Lx9 LINE L1 -236 7408 6993 2 1436 348 143 78 95 chr3 111662814 111662930 -47936853 + Lx9 LINE L1 7423 7536 -108 2 1436 374 82 0 0 chr3 111662937 111662986 -47936797 - L1_Mus3 LINE L1 -611 6027 5979 2 1436 2646 85 3 0 chr3 111662985 111663338 -47936445 + L1_Mus3 LINE L1 5970 6323 -315 2 1436 781 110 34 7 chr3 111663335 111663481 -47936302 + L1_Mus3 LINE L1 6489 6638 0 2 1436 269 252 26 53 chr3 111663481 111663594 -47936189 + Lx9 LINE L1 7530 7639 -5 2 1436 23 33 0 0 chr3 111664067 111664097 -47935686 + AT_rich Low_complexity Low_complexity 1 30 0 2 1436 203 179 0 0 chr3 111664641 111664680 -47935103 + T-rich Low_complexity Low_complexity 2 40 0 2 1436 616 384 55 8 chr3 111665384 111665641 -47934142 - B4A SINE B4 -6 286 18 2 1436 549 30 0 0 chr3 111666406 111666473 -47933310 + (TG)n Simple_repeat Simple_repeat 2 68 0 2 1436 1195 207 4 36 chr3 111666473 111666718 -47933065 + RLTR23 LTR ERV1 193 429 -1 2 1436 298 453 44 9 chr3 111667093 111667318 -47932465 + LTR33 LTR ERVL 59 291 -224 2 1436 330 353 47 29 chr3 111667856 111668028 -47931755 + B4 SINE B4 43 217 -75 2 1436 283 340 19 0 chr3 111668085 111668191 -47931592 - Lx8 LINE L1 -547 6926 6819 2 1436 30 45 0 0 chr3 111668250 111668294 -47931489 + AT_rich Low_complexity Low_complexity 1 44 0 2 1436 29 70 0 0 chr3 111668539 111668596 -47931187 + AT_rich Low_complexity Low_complexity 1 57 0 2 1436 200 160 40 0 chr3 111669502 111669552 -47930231 + A-rich Low_complexity Low_complexity 3 54 0 2 1436 2017 53 19 8 chr3 111669978 111670246 -47929537 + L1Md_F3 LINE L1 6314 6584 0 2 1436 1163 69 0 0 chr3 111670269 111670414 -47929369 + B1_Mus1 SINE Alu 4 148 0 2 1436 294 29 0 0 chr3 111670415 111670450 -47929333 + (GAAA)n Simple_repeat Simple_repeat 2 36 0 2 1436 21 57 0 0 chr3 111670669 111670704 -47929079 + AT_rich Low_complexity Low_complexity 1 35 0 2 1436 2608 242 55 45 chr3 111670924 111671708 -47928075 - Lx2B LINE L1 -2 6998 6207 2 1436 1538 190 13 9 chr3 111671729 111672046 -47927737 + Lx2B LINE L1 5837 6140 -860 2 1436 254 273 73 142 chr3 111672611 111672642 -47927141 - B2_Mm2 SINE B2 -4 191 161 2 1436 378 0 0 0 chr3 111672642 111672684 -47927099 + (TG)n Simple_repeat Simple_repeat 2 43 0 2 1436 377 351 92 12 chr3 111672684 111672857 -47926926 - B3 SINE B2 -29 187 1 2 179 4159 69 22 11 chr3 111672940 111673496 -47926287 - L1_Mus1 LINE L1 0 6567 6006 2 1437 825 309 135 3 chr3 111673496 111673874 -47925909 + Lx9 LINE L1 6559 6986 -658 2 1437 253 271 28 9 chr3 111673873 111673981 -47925802 + Lx7 LINE L1 7303 7412 -284 2 1437 218 143 20 0 chr3 111673981 111674030 -47925753 + CT-rich Low_complexity Low_complexity 2 51 0 2 1437 237 65 0 0 chr3 111674041 111674072 -47925711 + (TG)n Simple_repeat Simple_repeat 2 32 0 2 1437 237 235 29 29 chr3 111674164 111674234 -47925549 + Lx7 LINE L1 7627 7696 0 2 1437 198 123 35 17 chr3 111674289 111674347 -47925436 + (CAAA)n Simple_repeat Simple_repeat 2 60 0 2 1437 4305 176 34 32 chr3 111674369 111675214 -47924569 + RLTR25A LTR ERVK 1 847 -256 2 1437 807 204 22 141 chr3 111675402 111675715 -47924068 + RLTR25A LTR ERVK 828 1103 0 2 1437 590 242 79 25 chr3 111675728 111675931 -47923852 + Lx9 LINE L1 7010 7223 -421 2 1437 358 260 83 8 chr3 111675931 111676063 -47923720 + Lx9 LINE L1 7325 7466 -178 2 1437 360 0 0 0 chr3 111676063 111676103 -47923680 + (CA)n Simple_repeat Simple_repeat 2 41 0 2 1437 28 86 0 0 chr3 111676173 111676243 -47923540 + AT_rich Low_complexity Low_complexity 1 70 0 2 1437 21 71 0 0 chr3 111676394 111676436 -47923347 + AT_rich Low_complexity Low_complexity 1 42 0 2 1437 489 121 0 0 chr3 111676975 111677058 -47922725 + (TG)n Simple_repeat Simple_repeat 2 84 0 2 1437 1686 73 23 54 chr3 111677584 111677726 -47922057 - Lx2A1 LINE L1 -1109 5899 5757 2 1437 306 0 0 0 chr3 111677726 111677760 -47922023 + (TA)n Simple_repeat Simple_repeat 1 34 0 2 1437 1686 73 23 54 chr3 111677760 111677878 -47921905 - Lx2A1 LINE L1 -1252 5756 5647 2 1437 5337 184 29 18 chr3 111677880 111678955 -47920828 + Lx2 LINE L1 5910 6996 -1 2 1437 191 108 27 0 chr3 111678955 111678975 -47920808 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 2 1437 7058 29 2 4 chr3 111678975 111679798 -47919985 - RLTR13B2 LTR ERVK 0 822 1 2 1437 191 108 27 0 chr3 111679798 111679814 -47919969 + (TAAA)n Simple_repeat Simple_repeat 1 16 0 2 1437 3878 250 44 16 chr3 111680496 111681554 -47918229 + Lx2B LINE L1 5903 6990 -10 2 1437 29 0 0 0 chr3 111681554 111681583 -47918200 + AT_rich Low_complexity Low_complexity 1 29 0 2 1437 2886 140 65 9 chr3 111682034 111682569 -47917214 + L1_Mur2 LINE L1 2278 2842 -3035 2 1437 297 114 0 0 chr3 111682571 111682615 -47917168 + L1_Mur2 LINE L1 2955 2998 -2879 2 1437 2816 113 2 2 chr3 111682922 111683339 -47916444 + L1Md_F2 LINE L1 6164 6580 -2 2 1437 488 312 33 33 chr3 111683382 111683597 -47916186 + B3 SINE B2 1 215 -1 2 1437 660 122 0 0 chr3 111683641 111683764 -47916019 + (GA)n Simple_repeat Simple_repeat 2 124 0 2 1437 303 140 0 0 chr3 111684043 111684093 -47915690 + (A)n Simple_repeat Simple_repeat 1 50 0 2 1437 26 30 0 0 chr3 111684395 111684428 -47915355 + AT_rich Low_complexity Low_complexity 1 33 0 2 1437 333 0 0 0 chr3 111685672 111685709 -47914074 + (CA)n Simple_repeat Simple_repeat 1 37 0 2 1437 238 93 18 36 chr3 111685864 111685920 -47913863 + (CAAAAA)n Simple_repeat Simple_repeat 4 58 0 2 1437 189 0 0 0 chr3 111686518 111686539 -47913244 + (CTGTG)n Simple_repeat Simple_repeat 5 25 0 2 1437 1934 281 52 15 chr3 111686899 111687533 -47912250 + Lx7 LINE L1 6783 7526 -170 2 1437 351 44 0 0 chr3 111687533 111687578 -47912205 + (TG)n Simple_repeat Simple_repeat 2 46 0 2 1437 320 300 76 21 chr3 111687578 111687737 -47912046 + Lx7 LINE L1 7527 7695 -1 2 1437 940 209 9 55 chr3 111687816 111688140 -47911643 + RMER17C LTR ERVK 16 439 -519 2 1437 587 285 53 39 chr3 111688321 111688529 -47911254 + B3 SINE B2 6 216 0 2 1437 39 38 0 0 chr3 111688627 111688680 -47911103 + AT_rich Low_complexity Low_complexity 1 53 0 2 1437 26 30 0 0 chr3 111689487 111689520 -47910263 + AT_rich Low_complexity Low_complexity 1 33 0 2 1437 1291 69 6 0 chr3 111689798 111689973 -47909810 + L1Md_T LINE L1 6406 6581 -1 2 1437 234 105 0 0 chr3 111690008 111690046 -47909737 + (A)n Simple_repeat Simple_repeat 1 38 0 2 1437 3671 179 29 4 chr3 111690063 111690761 -47909022 + Lx4A LINE L1 5587 6301 -757 2 1437 23 68 0 0 chr3 111691099 111691143 -47908640 + AT_rich Low_complexity Low_complexity 1 44 0 2 1437 297 147 0 16 chr3 111691490 111691556 -47908227 - L1_Mur2 LINE L1 -2862 3018 2955 2 1437 4598 155 55 19 chr3 111691558 111692503 -47907280 - L1_Mur2 LINE L1 -3035 2842 1864 2 1437 245 106 0 113 chr3 111692800 111692819 -47906964 - B3A SINE B2 -150 48 35 2 1437 6231 63 14 8 chr3 111692819 111693647 -47906136 - L1Md_F2 LINE L1 -5 6577 5745 2 1437 245 106 0 113 chr3 111693647 111693680 -47906103 - B3A SINE B2 -164 34 2 2 1437 415 229 49 8 chr3 111693987 111694110 -47905673 + URR1B DNA MER1_type 96 223 -2 2 1437 21 82 0 0 chr3 111694870 111694919 -47904864 + AT_rich Low_complexity Low_complexity 1 49 0 2 1437 919 163 58 5 chr3 111694940 111695131 -47904652 - RLTR21 LTR ERVK -538 1034 834 2 1437 297 0 0 0 chr3 111695225 111695258 -47904525 + (TG)n Simple_repeat Simple_repeat 2 34 0 2 1437 2123 147 41 0 chr3 111695375 111695762 -47904021 - RLTR21 LTR ERVK -515 1057 655 2 1437 32 57 0 0 chr3 111696031 111696084 -47903699 + AT_rich Low_complexity Low_complexity 1 53 0 2 1437 844 257 78 85 chr3 111696098 111696733 -47903050 + RMER17B LTR ERVK 1 899 -9 2 1437 306 0 0 0 chr3 111696840 111696874 -47902909 + (TTA)n Simple_repeat Simple_repeat 3 36 0 2 1437 321 214 14 0 chr3 111696875 111696945 -47902838 - L1_Mus4 LINE L1 -269 6367 6297 2 1437 1730 202 196 7 chr3 111696948 111697401 -47902382 - RMER6D LTR ERVK -181 539 1 2 1437 295 266 21 0 chr3 111697491 111697635 -47902148 + (TA)n Simple_repeat Simple_repeat 1 147 0 2 1437 270 274 142 78 chr3 111700441 111700659 -47899124 - Lx9 LINE L1 -419 7225 6994 2 1437 206 256 13 0 chr3 111700669 111700747 -47899036 + (CATATA)n Simple_repeat Simple_repeat 6 84 0 2 1437 23 78 0 0 chr3 111701217 111701268 -47898515 + AT_rich Low_complexity Low_complexity 1 51 0 2 1437 1530 37 32 0 chr3 111701693 111701880 -47897903 + B2_Mm1t SINE B2 1 193 0 2 1437 413 209 41 54 chr3 111703640 111703787 -47895996 + Lx9 LINE L1 7499 7643 -1 2 1437 721 242 73 5 chr3 111704049 111704240 -47895543 + RMER20B LTR ERVK 234 437 -190 2 1437 635 128 82 9 chr3 111704300 111704410 -47895373 - RMER6D LTR ERVK -597 123 6 2 1437 37719 54 5 17 chr3 111704985 111711267 -47888516 - L1Md_T LINE L1 0 6582 416 2 1437 21 0 0 0 chr3 111711440 111711461 -47888322 + AT_rich Low_complexity Low_complexity 1 21 0 2 1437 255 272 50 50 chr3 111711783 111711942 -47887841 + L1M4 LINE L1 4915 5073 -1073 2 1437 33 0 0 0 chr3 111712083 111712116 -47887667 + AT_rich Low_complexity Low_complexity 1 33 0 2 1437 576 242 42 16 chr3 111713394 111713460 -47886323 + L1_Mur3 LINE L1 4561 4627 -1250 2 1437 216 0 0 0 chr3 111713460 111713484 -47886299 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 2 1437 576 242 42 16 chr3 111713484 111713610 -47886173 + L1_Mur3 LINE L1 4628 4757 -1120 2 1437 661 211 51 0 chr3 111713611 111713786 -47885997 + L1_Mur3 LINE L1 5187 5370 -510 2 1437 2155 99 22 3 chr3 111713781 111714095 -47885688 - Lx LINE L1 -724 5930 5611 2 1437 4326 144 4 35 chr3 111714096 111714846 -47884937 + Lx LINE L1 5928 6654 0 2 1437 1723 261 8 8 chr3 111714846 111715248 -47884535 + L1_Mur3 LINE L1 5358 5759 -121 2 1437 23 0 0 0 chr3 111715295 111715318 -47884465 + AT_rich Low_complexity Low_complexity 1 23 0 2 1437 21682 123 35 11 chr3 111715320 111719967 -47879816 - Lx3A LINE L1 -9 6972 2226 2 1437 983 344 80 31 chr3 111719974 111720514 -47879269 + Lx5 LINE L1 6464 7029 -21 2 1437 329 136 15 0 chr3 111721456 111721522 -47878261 + (TTTA)n Simple_repeat Simple_repeat 2 68 0 3 1437 187 367 46 2 chr3 111721653 111721762 -47878021 + MER5A DNA MER1_type 47 162 -27 3 1437 4368 65 9 2 chr3 111721762 111722318 -47877465 + LTRIS2 LTR ERV1 5 564 0 3 1437 302 185 12 0 chr3 111722678 111722759 -47877024 + GA-rich Low_complexity Low_complexity 2 83 0 3 1437 207 0 0 0 chr3 111723246 111723269 -47876514 + (TTTTTA)n Simple_repeat Simple_repeat 1 23 0 3 1437 194 81 27 0 chr3 111723600 111723637 -47876146 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 3 1437 2972 207 42 30 chr3 111724135 111724846 -47874937 + RMER6D LTR ERVK 1 720 0 3 1437 2224 39 14 3 chr3 111725348 111725631 -47874152 + L1Md_F3 LINE L1 6299 6584 0 3 1437 23 33 0 0 chr3 111726401 111726431 -47873352 + AT_rich Low_complexity Low_complexity 1 30 0 3 1437 241 350 29 67 chr3 111726969 111727073 -47872710 - ID_B1 SINE B4 -35 189 90 3 1437 22 70 0 0 chr3 111727167 111727210 -47872573 + AT_rich Low_complexity Low_complexity 1 43 0 3 1437 29 28 0 0 chr3 111727380 111727416 -47872367 + AT_rich Low_complexity Low_complexity 1 36 0 3 1437 22 0 0 0 chr3 111728329 111728351 -47871432 + AT_rich Low_complexity Low_complexity 1 22 0 3 1437 311 328 60 8 chr3 111728501 111728618 -47871165 + RSINE1 SINE B4 14 136 -29 3 1437 843 86 0 0 chr3 111728621 111728738 -47871045 + (TC)n Simple_repeat Simple_repeat 2 118 0 3 1437 327 231 83 58 chr3 111728923 111729079 -47870704 + Lx9 LINE L1 7483 7642 -2 3 1437 277 410 12 25 chr3 111729413 111729573 -47870210 - B3 SINE B2 -12 204 47 3 1437 1314 194 39 3 chr3 111730843 111731128 -47868655 - Lx2B LINE L1 0 7000 6706 3 1437 5107 137 14 21 chr3 111731186 111732056 -47867727 - Lx3_Mus LINE L1 -7 7002 6139 3 1437 4542 116 34 5 chr3 111732056 111733047 -47866736 + Lx3_Mus LINE L1 5145 6161 -848 3 1437 5018 118 17 30 chr3 111733077 111733890 -47865893 - L1_Mus4 LINE L1 -7 6629 5827 3 1437 4664 114 82 77 chr3 111733914 111734789 -47864994 - L1_Mus2 LINE L1 0 6566 5687 3 1437 21 82 0 0 chr3 111734864 111734913 -47864870 + AT_rich Low_complexity Low_complexity 1 49 0 3 1437 34 42 0 0 chr3 111734991 111735039 -47864744 + AT_rich Low_complexity Low_complexity 1 48 0 3 1437 26 0 0 0 chr3 111735231 111735257 -47864526 + AT_rich Low_complexity Low_complexity 1 26 0 3 1437 404 82 16 0 chr3 111735743 111735804 -47863979 + (TA)n Simple_repeat Simple_repeat 2 63 0 3 1437 207 0 0 0 chr3 111736907 111736930 -47862853 + (TTTTA)n Simple_repeat Simple_repeat 4 26 0 3 1437 206 219 0 0 chr3 111737181 111737222 -47862561 + GA-rich Low_complexity Low_complexity 2 42 0 3 1437 3352 35 0 0 chr3 111737229 111737625 -47862158 - MTA_Mm LTR MaLR 0 396 1 3 1437 26 0 0 0 chr3 111738002 111738028 -47861755 + AT_rich Low_complexity Low_complexity 1 26 0 3 1437 264 105 0 0 chr3 111738319 111738357 -47861426 + MTC LTR MaLR 9 46 -375 3 1437 2001 93 6 111 chr3 111739058 111739420 -47860363 - L1_Mus4 LINE L1 -12 6624 6301 3 1437 23 0 0 0 chr3 111739433 111739456 -47860327 + AT_rich Low_complexity Low_complexity 1 23 0 3 1437 427 378 47 0 chr3 111739613 111739785 -47859998 + B4 SINE B4 24 203 -89 3 1437 29 0 0 0 chr3 111739948 111739977 -47859806 + AT_rich Low_complexity Low_complexity 1 29 0 3 1437 188 67 33 0 chr3 111740134 111740164 -47859619 + (TATATG)n Simple_repeat Simple_repeat 5 35 0 3 1437 2875 147 64 15 chr3 111741753 111742348 -47857435 - MusHAL1 LINE L1 -1765 947 324 3 1437 285 29 0 0 chr3 111742377 111742411 -47857372 + (TTCA)n Simple_repeat Simple_repeat 3 36 0 3 1437 2140 285 40 33 chr3 111742415 111743083 -47856700 - Lx6 LINE L1 -169 7291 6619 3 1437 21 71 0 0 chr3 111743208 111743250 -47856533 + AT_rich Low_complexity Low_complexity 1 42 0 3 1437 251 284 92 49 chr3 111743376 111743539 -47856244 - RLTR22_Mus LTR ERVK -476 1332 1163 3 1437 2646 140 2 2 chr3 111743584 111744005 -47855778 - Lx4A LINE L1 -987 6071 5651 3 1437 1274 85 0 0 chr3 111744113 111744278 -47855505 - Lx3_Mus LINE L1 -268 6741 6577 3 1437 345 241 23 11 chr3 111744275 111744363 -47855420 - Lx7 LINE L1 -244 7452 7364 3 1437 203 146 24 0 chr3 111744410 111744451 -47855332 + GA-rich Low_complexity Low_complexity 2 43 0 3 1437 26 50 0 0 chr3 111744451 111744491 -47855292 + AT_rich Low_complexity Low_complexity 1 40 0 3 1437 551 286 50 35 chr3 111744511 111744710 -47855073 - Lx7 LINE L1 -354 7342 7141 3 1437 233 57 29 0 chr3 111745618 111745653 -47854130 + (CA)n Simple_repeat Simple_repeat 1 36 0 3 1437 446 143 0 25 chr3 111746331 111746410 -47853373 + Lx2B LINE L1 6324 6400 -600 3 1437 2803 175 8 43 chr3 111746408 111746492 -47853291 - L1_Mur2 LINE L1 -1193 4684 4609 3 1437 2628 93 3 0 chr3 111746492 111746859 -47852924 + L1_Mus1 LINE L1 6200 6567 0 3 1437 2803 175 8 43 chr3 111746859 111747359 -47852424 - L1_Mur2 LINE L1 -1269 4608 4120 3 1437 2287 224 11 32 chr3 111747375 111747933 -47851850 + Lx2B LINE L1 6455 7000 0 3 1437 3692 108 7 4 chr3 111748080 111748629 -47851154 + Lx3_Mus LINE L1 6459 7009 0 3 1437 504 295 30 35 chr3 111748735 111748932 -47850851 - B3A SINE B2 -1 197 2 3 1437 225 302 58 0 chr3 111749179 111749265 -47850518 - L1MA6 LINE L1 -17 6283 6193 3 1437 31 26 0 0 chr3 111749574 111749612 -47850171 + AT_rich Low_complexity Low_complexity 1 38 0 3 1437 207 191 0 0 chr3 111749654 111749696 -47850087 + (TTTG)n Simple_repeat Simple_repeat 2 43 0 3 1437 1142 232 35 72 chr3 111750036 111750423 -47849360 - MT2B LTR ERVL 0 601 180 3 1437 32 101 0 0 chr3 111750471 111750580 -47849203 + AT_rich Low_complexity Low_complexity 1 109 0 3 1437 290 304 54 0 chr3 111750615 111750707 -47849076 - PB1D10 SINE Alu -8 109 13 3 1437 1048 90 7 0 chr3 111750858 111751003 -47848780 - B1_Mus1 SINE Alu 0 148 3 3 1437 21 0 0 0 chr3 111752068 111752089 -47847694 + AT_rich Low_complexity Low_complexity 1 21 0 3 1437 388 303 139 19 chr3 111752965 111753180 -47846603 - Lx8 LINE L1 -9 7464 7224 3 1437 1845 340 30 28 chr3 111753179 111754058 -47845725 - Lx8 LINE L1 -496 6977 6098 3 1437 21 0 0 0 chr3 111754711 111754732 -47845051 + AT_rich Low_complexity Low_complexity 1 21 0 3 1437 193 185 0 30 chr3 111755134 111755201 -47844582 + (TA)n Simple_repeat Simple_repeat 1 65 0 3 1437 236 238 124 56 chr3 111755567 111755656 -47844127 + B4A SINE B4 198 292 0 3 1437 4037 80 3 7 chr3 111756002 111756568 -47843215 - L1Md_F2 LINE L1 -4 6578 6015 3 1437 302 0 0 0 chr3 111756588 111756624 -47843159 - L1_Mm LINE L1 -582 5301 5266 3 1437 1818 277 45 28 chr3 111756950 111757478 -47842305 + Lx6 LINE L1 6913 7449 -11 3 1437 248 143 18 0 chr3 111757906 111757962 -47841821 + (TA)n Simple_repeat Simple_repeat 2 58 0 3 1437 501 362 6 6 chr3 111758528 111758689 -47841094 + RSINE1 SINE B4 5 165 0 3 1437 414 222 115 33 chr3 111759740 111759778 -47840005 + MTD LTR MaLR 5 39 -380 3 1437 480 35 0 0 chr3 111759778 111759836 -47839947 + (TCTA)n Simple_repeat Simple_repeat 4 61 0 3 1437 414 222 115 33 chr3 111759836 111759979 -47839804 + MTD LTR MaLR 40 200 -219 3 1437 1306 307 69 26 chr3 111759987 111760495 -47839288 + Lx6 LINE L1 6761 7290 -170 3 1437 2088 282 64 13 chr3 111760578 111761343 -47838440 + Lx9 LINE L1 6704 7507 -137 3 1437 33406 86 5 3 chr3 111762252 111765902 -47833881 + L1Md_F3 LINE L1 557 4203 -1680 3 1437 303 28 0 0 chr3 111765902 111765938 -47833845 + (TA)n Simple_repeat Simple_repeat 1 36 0 3 1437 33406 70 4 3 chr3 111765938 111768279 -47831504 + L1Md_F3 LINE L1 4204 6559 -25 3 1437 243 0 0 0 chr3 111768281 111768308 -47831475 + (TA)n Simple_repeat Simple_repeat 2 28 0 3 1437 5275 145 18 26 chr3 111768478 111769433 -47830350 - Lx2 LINE L1 0 6997 6051 3 1437 627 165 0 0 chr3 111771850 111771983 -47827800 + CT-rich Low_complexity Low_complexity 2 134 0 3 1437 22 80 0 0 chr3 111772448 111772498 -47827285 + AT_rich Low_complexity Low_complexity 1 50 0 3 1437 3765 245 16 12 chr3 111772512 111773349 -47826434 + Lx6 LINE L1 6471 7310 -150 3 1437 25 0 0 0 chr3 111773790 111773815 -47825968 + AT_rich Low_complexity Low_complexity 1 25 0 3 1437 585 120 0 0 chr3 111773871 111773963 -47825820 + (GA)n Simple_repeat Simple_repeat 2 93 0 3 1437 536 250 148 20 chr3 111773990 111774186 -47825597 - Lx6 LINE L1 -161 7299 7079 3 1437 815 199 117 51 chr3 111774283 111774479 -47825304 - URR1A DNA MER1_type -11 215 7 3 1437 2705 76 0 66 chr3 111774798 111775209 -47824574 + L1_Mus2 LINE L1 6183 6566 0 3 1437 3648 140 30 40 chr3 111775402 111776377 -47823406 + Lx LINE L1 5140 6084 -570 3 1437 22 35 0 0 chr3 111776455 111776484 -47823299 + AT_rich Low_complexity Low_complexity 1 29 0 3 1437 2914 191 16 16 chr3 111776500 111777065 -47822718 - Lx2B LINE L1 -4 6996 6432 3 1437 669 276 102 67 chr3 111777094 111777408 -47822375 + MT2B LTR ERVL 277 601 0 3 1437 31752 83 4 1 chr3 111777442 111782623 -47817160 + L1Md_F2 LINE L1 392 5584 -299 3 1437 7306 76 8 6 chr3 111782625 111783617 -47816166 + L1Md_F2 LINE L1 5587 6580 -2 3 1437 603 346 0 21 chr3 111783657 111783849 -47815934 + B3 SINE B2 23 210 -6 3 1437 46 54 0 0 chr3 111784211 111784285 -47815498 + AT_rich Low_complexity Low_complexity 1 74 0 3 1437 23 33 0 0 chr3 111784317 111784347 -47815436 + AT_rich Low_complexity Low_complexity 1 30 0 3 1437 438 196 0 0 chr3 111784441 111784538 -47815245 + (TA)n Simple_repeat Simple_repeat 2 98 0 3 1437 497 120 0 12 chr3 111784574 111784658 -47815125 + (TA)n Simple_repeat Simple_repeat 2 84 0 3 1437 666 0 0 0 chr3 111786791 111786865 -47812918 + (TA)n Simple_repeat Simple_repeat 1 74 0 3 1437 2599 81 11 11 chr3 111787277 111787654 -47812129 + L1Md_F2 LINE L1 6205 6581 -1 3 1437 24 0 0 0 chr3 111787838 111787862 -47811921 + AT_rich Low_complexity Low_complexity 1 24 0 3 1437 446 359 14 19 chr3 111787925 111788141 -47811642 - B3 SINE B2 0 216 2 3 1437 549 0 0 0 chr3 111789356 111789417 -47810366 + (TAGA)n Simple_repeat Simple_repeat 2 62 0 3 1437 232 360 9 57 chr3 111790091 111790197 -47809586 - PB1D10 SINE Alu -2 115 15 3 1437 354 360 7 35 chr3 111790291 111790435 -47809348 + B4 SINE B4 81 220 -72 3 1437 318 333 137 21 chr3 111790486 111790719 -47809064 + Lx9 LINE L1 7081 7340 -304 4 1437 25 0 0 0 chr3 111790874 111790899 -47808884 + AT_rich Low_complexity Low_complexity 1 25 0 4 1437 4835 99 10 4 chr3 111791122 111791823 -47807960 - L1_Mus1 LINE L1 0 6567 5863 4 1437 234 0 0 0 chr3 111791824 111791850 -47807933 + (T)n Simple_repeat Simple_repeat 1 26 0 4 1437 988 112 0 27 chr3 111791850 111791997 -47807786 - B1_Mus1 SINE Alu 0 148 6 4 1437 7977 124 12 8 chr3 111792002 111793256 -47806527 - L1_Mm LINE L1 -9 5874 4616 4 1437 859 111 0 0 chr3 111793256 111793391 -47806392 - L1_Mm LINE L1 -1637 4246 4112 4 1437 3198 93 4 21 chr3 111793391 111793862 -47805921 + L1Md_F2 LINE L1 6120 6582 0 4 1437 349 78 0 0 chr3 111795419 111795470 -47804313 - Lx LINE L1 -850 5804 5754 4 1437 3228 134 58 13 chr3 111795470 111796008 -47803775 + Lx LINE L1 6080 6641 -13 4 1437 4648 166 45 25 chr3 111796039 111796954 -47802829 - L1_Mur1 LINE L1 -1681 4205 3254 4 1437 237 33 0 0 chr3 111796954 111796984 -47802799 + (TTAA)n Simple_repeat Simple_repeat 3 32 0 4 1437 1203 49 0 0 chr3 111796984 111797128 -47802655 - B1_Mm SINE Alu -3 144 1 4 1437 4648 166 45 25 chr3 111797128 111797236 -47802547 - L1_Mur1 LINE L1 -2633 3253 3162 4 1437 1815 204 77 21 chr3 111797235 111797716 -47802067 + L1_Mur1 LINE L1 4236 4743 -1143 4 1437 1807 94 65 0 chr3 111797712 111797989 -47801794 - Lx LINE L1 -602 6052 5758 4 1437 3267 152 12 5 chr3 111797989 111798551 -47801232 + Lx LINE L1 6089 6654 0 4 1437 410 158 0 13 chr3 111798557 111798634 -47801149 + L1_Mur1 LINE L1 4743 4818 -1068 4 1437 28408 108 4 11 chr3 111798636 111803676 -47796107 + L1_Mus1 LINE L1 1561 6567 0 4 1437 261 0 0 0 chr3 111803725 111803754 -47796029 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 4 1437 183 167 0 0 chr3 111803902 111803944 -47795839 + T-rich Low_complexity Low_complexity 1 42 0 4 1437 888 117 0 21 chr3 111803945 111804085 -47795698 - B1_Mus2 SINE Alu 0 147 11 4 1437 305 173 34 90 chr3 111804006 111804095 -47795688 - 4.5SRNA scRNA scRNA -8 86 3 4 1438 2223 52 7 17 chr3 111804917 111805208 -47794575 - L1_Mus1 LINE L1 -2 6565 6278 4 1438 1683 217 86 11 chr3 111805259 111805618 -47794165 - ORR1B1 LTR MaLR -8 386 1 4 1438 22 0 0 0 chr3 111805894 111805916 -47793867 + AT_rich Low_complexity Low_complexity 1 22 0 4 1438 50 18 0 0 chr3 111805948 111806005 -47793778 + AT_rich Low_complexity Low_complexity 1 57 0 4 1438 537 256 94 18 chr3 111806023 111806194 -47793589 - Lx6 LINE L1 -511 6949 6766 4 1438 1606 282 45 33 chr3 111806188 111806675 -47793108 + Lx6 LINE L1 6967 7459 -1 4 1438 4926 194 10 20 chr3 111806677 111807672 -47792111 - Lx2B LINE L1 -18 6982 5998 4 1438 6403 157 25 5 chr3 111807697 111809284 -47790499 - Lx LINE L1 -13 6641 5022 4 1438 15633 56 0 13 chr3 111809283 111811701 -47788082 + L1Md_T LINE L1 3292 5586 -297 4 1438 8344 36 0 0 chr3 111811701 111812696 -47787087 + L1Md_T LINE L1 5587 6581 -1 4 1438 5025 169 60 2 chr3 111812721 111813715 -47786068 - L1_Mm LINE L1 -849 5034 3983 4 1438 3462 156 5 5 chr3 111813714 111814327 -47785456 + L1_Mur2 LINE L1 3406 4018 -1859 4 1438 2340 191 13 5 chr3 111814325 111814909 -47784874 - Lx2B LINE L1 -988 6012 5414 4 1438 1708 185 8 6 chr3 111814924 111815278 -47784505 + L1_Mur2 LINE L1 4944 5298 -579 4 1438 832 178 134 25 chr3 111815278 111815505 -47784278 + Lx3B LINE L1 6753 7009 0 4 1438 1325 186 16 20 chr3 111815514 111815766 -47784017 - Lx5 LINE L1 -515 6535 6285 4 1438 2439 240 17 28 chr3 111815754 111816286 -47783497 + Lx5 LINE L1 6512 7037 -13 4 1438 252 0 0 0 chr3 111816289 111816317 -47783466 + (TAAAA)n Simple_repeat Simple_repeat 2 29 0 4 1438 652 142 0 0 chr3 111816335 111816441 -47783342 + L1_Mur2 LINE L1 5285 5390 -487 4 1438 236 292 65 43 chr3 111818396 111818489 -47781294 + Lx8 LINE L1 7192 7286 -187 4 1438 4688 152 26 3 chr3 111818472 111819210 -47780573 + Lx2A LINE L1 6222 6976 -32 4 1438 307 118 88 0 chr3 111819212 111819280 -47780503 + Lx2A LINE L1 6932 7005 -3 4 1438 26 30 0 0 chr3 111819364 111819397 -47780386 + AT_rich Low_complexity Low_complexity 1 33 0 4 1438 24 0 0 0 chr3 111819434 111819458 -47780325 + AT_rich Low_complexity Low_complexity 1 24 0 4 1438 1149 307 68 5 chr3 111819966 111820346 -47779437 + MTD LTR MaLR 1 404 -15 4 1438 1512 227 45 28 chr3 111821232 111821590 -47778193 - ORR1D1 LTR MaLR -2 372 9 4 1438 488 59 0 14 chr3 111823048 111823117 -47776666 + (TA)n Simple_repeat Simple_repeat 2 69 0 4 1438 480 62 0 0 chr3 111823135 111823199 -47776584 + (TAGA)n Simple_repeat Simple_repeat 3 66 0 4 1438 269 238 9 62 chr3 111823213 111823325 -47776458 + Lx9 LINE L1 7539 7644 0 4 1438 557 182 10 0 chr3 111824132 111824231 -47775552 + L1_Mur3 LINE L1 525 624 -7088 4 1438 216 0 0 0 chr3 111824871 111824895 -47774888 + (TTTTA)n Simple_repeat Simple_repeat 5 28 0 4 1438 184 167 16 48 chr3 111824999 111825062 -47774721 + (TA)n Simple_repeat Simple_repeat 1 61 0 4 1438 201 176 0 0 chr3 111825398 111825432 -47774351 + (TA)n Simple_repeat Simple_repeat 2 35 0 4 1438 501 279 28 14 chr3 111825905 111826047 -47773736 - RLTR25B LTR ERVK -2 1026 883 4 1438 430 180 74 184 chr3 111826023 111826186 -47773597 - RLTR25B LTR ERVK -253 775 631 4 1438 1186 234 10 94 chr3 111826137 111826529 -47773254 - ORR1A3-int LTR MaLR -971 992 634 4 1438 591 292 22 27 chr3 111826595 111826778 -47773005 - RLTR25B LTR ERVK -846 182 1 4 1438 593 244 56 62 chr3 111827443 111827622 -47772161 - MT2B2 LTR ERVL 0 584 407 4 1438 254 164 36 0 chr3 111827618 111827673 -47772110 - MT2B2 LTR ERVL -544 57 1 4 1438 335 376 70 26 chr3 111828028 111828301 -47771482 - MLT1A0 LTR MaLR -50 315 31 4 1438 840 128 13 6 chr3 111829674 111829831 -47769952 + (GGAA)n Simple_repeat Simple_repeat 3 160 0 4 1438 27 0 0 0 chr3 111830437 111830464 -47769319 + AT_rich Low_complexity Low_complexity 1 27 0 4 1438 6147 207 50 8 chr3 111830625 111831164 -47768619 - Lx3C LINE L1 -2 6974 6405 4 1438 6273 25 3 8 chr3 111831164 111831924 -47767859 - L1Md_F3 LINE L1 0 6584 5829 4 1438 9412 199 55 17 chr3 111831924 111835931 -47763852 - Lx3C LINE L1 -572 6404 803 4 1438 22 0 0 0 chr3 111836741 111836763 -47763020 + AT_rich Low_complexity Low_complexity 1 22 0 4 1438 1678 283 64 6 chr3 111837712 111838242 -47761541 + Lx6 LINE L1 6723 7283 -177 4 1438 465 19 0 0 chr3 111838391 111838445 -47761338 + (TG)n Simple_repeat Simple_repeat 2 55 0 4 1438 1087 225 59 7 chr3 111838449 111838633 -47761150 - Lx9 LINE L1 -181 7463 7267 4 1438 2125 116 3 63 chr3 111838633 111839011 -47760772 - Lx LINE L1 0 6654 6300 4 1438 1087 225 59 7 chr3 111839011 111839113 -47760670 - Lx9 LINE L1 -378 7266 7162 4 1438 352 386 20 25 chr3 111839265 111839509 -47760274 - Lx8 LINE L1 -101 7372 7130 4 1438 21 0 0 0 chr3 111839837 111839858 -47759925 + AT_rich Low_complexity Low_complexity 1 21 0 4 1438 478 190 17 0 chr3 111840275 111840391 -47759392 + (TA)n Simple_repeat Simple_repeat 2 119 0 4 1438 851 230 17 17 chr3 111840394 111840575 -47759208 + Lx7 LINE L1 6386 6566 -1130 4 1438 1130 82 0 0 chr3 111840747 111840894 -47758889 + B1_Mus1 SINE Alu 2 148 0 4 1438 249 304 14 0 chr3 111841221 111841290 -47758493 + B4 SINE B4 12 81 -211 4 1438 633 167 13 7 chr3 111841290 111841441 -47758342 + (CA)n Simple_repeat Simple_repeat 1 152 0 4 1438 321 332 92 52 chr3 111841486 111841715 -47758068 - RMER15 LTR ERVL -63 512 275 4 1438 239 239 31 93 chr3 111841965 111842062 -47757721 - Charlie5 DNA MER1_type -2507 117 27 4 1438 234 273 28 75 chr3 111842257 111842364 -47757419 + L1MEf LINE L1 48 149 -6051 4 1438 4404 167 16 20 chr3 111843167 111844073 -47755710 + L1_Mur2 LINE L1 3962 4863 -1014 4 1438 1465 266 17 8 chr3 111844148 111844504 -47755279 - ORR1B2 LTR MaLR 0 367 9 4 1438 3455 108 0 0 chr3 111844569 111845052 -47754731 - L1_Mus3 LINE L1 -351 6287 5805 4 1438 2645 104 13 2 chr3 111845052 111845487 -47754296 + L1_Mus3 LINE L1 6235 6638 0 4 1438 508 14 29 0 chr3 111845658 111845727 -47754056 + (TAGA)n Simple_repeat Simple_repeat 4 74 0 4 1438 202 119 71 0 chr3 111845836 111845878 -47753905 + (TTTG)n Simple_repeat Simple_repeat 4 48 0 4 1438 224 319 13 77 chr3 111845897 111845975 -47753808 - PB1 SINE Alu -54 73 1 4 1438 11721 97 22 29 chr3 111846232 111848570 -47751213 + L1Md_F2 LINE L1 422 2737 -3146 4 1438 9972 54 2 6 chr3 111848544 111849816 -47749967 + L1Md_F2 LINE L1 4319 5585 -298 4 1438 7926 49 5 3 chr3 111849817 111850811 -47748972 + L1Md_F2 LINE L1 5587 6582 0 4 1438 617 226 161 13 chr3 111851097 111851311 -47748472 - Lx8 LINE L1 -1666 5807 5576 4 1438 266 87 0 21 chr3 111851762 111851809 -47747974 + (TA)n Simple_repeat Simple_repeat 2 47 0 4 1438 259 187 65 21 chr3 111851860 111851953 -47747830 + (TTATG)n Simple_repeat Simple_repeat 3 99 0 4 1438 274 322 164 9 chr3 111852190 111852422 -47747361 + Tigger7 DNA MER2_type 2188 2455 -36 4 1438 288 176 28 42 chr3 111852703 111852774 -47747009 - RNLTR23 LTR ERVK 0 642 573 4 1438 260 213 64 52 chr3 111853242 111853415 -47746368 + (TTATA)n Simple_repeat Simple_repeat 5 179 0 4 1438 268 224 84 36 chr3 111853330 111853497 -47746286 + (TTATG)n Simple_repeat Simple_repeat 5 179 0 4 1438 199 79 0 50 chr3 111853540 111853580 -47746203 + (TATATG)n Simple_repeat Simple_repeat 6 43 0 4 1438 31 44 0 0 chr3 111855146 111855191 -47744592 + AT_rich Low_complexity Low_complexity 1 45 0 4 1438 25 51 0 0 chr3 111855235 111855274 -47744509 + AT_rich Low_complexity Low_complexity 1 39 0 4 1438 239 152 0 21 chr3 111855816 111855863 -47743920 - MTE2a LTR MaLR -331 48 3 4 1438 21 36 0 0 chr3 111857112 111857140 -47742643 + AT_rich Low_complexity Low_complexity 1 28 0 4 1438 1736 56 94 0 chr3 111857641 111857875 -47741908 - L1Md_F2 LINE L1 0 6582 6327 4 1438 1928 204 21 14 chr3 111859176 111859598 -47740185 + Lx2B LINE L1 6088 6512 -488 4 1438 22 0 0 0 chr3 111859944 111859966 -47739817 + AT_rich Low_complexity Low_complexity 1 22 0 4 1438 344 241 0 25 chr3 111860262 111860343 -47739440 - MTC LTR MaLR -342 79 1 4 1438 283 226 94 38 chr3 111860387 111860493 -47739290 + RMER15 LTR ERVL 357 468 -107 4 1438 185 211 0 19 chr3 111860509 111860562 -47739221 + G-rich Low_complexity Low_complexity 2 53 0 4 1438 1917 123 4 2 chr3 111860900 111861198 -47738585 + L1_Mus3 LINE L1 5820 6116 -522 4 1438 291 272 152 0 chr3 111861591 111861683 -47738100 + B4A SINE B4 26 131 -161 4 1438 351 331 61 67 chr3 111862009 111862174 -47737609 + B3A SINE B2 2 165 -33 4 1438 24 53 0 0 chr3 111862213 111862251 -47737532 + AT_rich Low_complexity Low_complexity 1 38 0 4 1438 282 293 109 20 chr3 111863058 111863159 -47736624 - RSINE1 SINE B4 -54 111 2 5 1438 978 308 60 6 chr3 111863643 111863960 -47735823 + MTD LTR MaLR 72 405 -14 5 1438 300 254 57 9 chr3 111865035 111865138 -47734645 - MLT1I LTR MaLR -21 427 315 5 1438 492 268 133 19 chr3 111865455 111865824 -47733959 + Lx9 LINE L1 7233 7643 -1 5 1438 918 223 69 40 chr3 111866053 111866328 -47733455 - Lx9 LINE L1 -171 7473 7191 5 1438 249 244 59 0 chr3 111866324 111866443 -47733340 + Lx9 LINE L1 7497 7622 -22 5 1438 29 28 0 0 chr3 111866448 111866484 -47733299 + AT_rich Low_complexity Low_complexity 1 36 0 5 1438 248 208 14 14 chr3 111867473 111867546 -47732237 - Lx9 LINE L1 -82 7562 7490 5 1438 30380 37 0 0 chr3 111867571 111871280 -47728503 + L1Md_T LINE L1 1878 5586 -297 5 1438 9005 4 0 0 chr3 111871280 111872276 -47727507 + L1Md_T LINE L1 5587 6582 0 5 1438 5741 112 143 8 chr3 111872292 111873925 -47725858 - Lx3A LINE L1 -458 6523 4678 5 1438 2750 152 11 0 chr3 111873929 111874375 -47725408 + Lx3A LINE L1 6525 6975 -6 5 1438 21 0 0 0 chr3 111874866 111874887 -47724896 + AT_rich Low_complexity Low_complexity 1 21 0 5 1438 360 324 46 37 chr3 111875347 111875719 -47724064 + L1M5 LINE L1 4545 4912 -1234 5 1438 314 362 89 5 chr3 111875928 111876353 -47723430 + L1MC3 LINE L1 6586 7046 -739 5 1438 321 167 0 0 chr3 111876834 111876912 -47722871 + (TA)n Simple_repeat Simple_repeat 1 78 0 5 1438 1239 63 86 0 chr3 111876969 111877143 -47722640 - B2_Mm2 SINE B2 -6 189 1 5 1438 29 0 0 0 chr3 111877149 111877178 -47722605 + AT_rich Low_complexity Low_complexity 1 29 0 5 1438 314 23 23 0 chr3 111877697 111877740 -47722043 + (TA)n Simple_repeat Simple_repeat 2 45 0 5 1438 302 154 19 0 chr3 111878004 111878056 -47721727 - L1_Mm LINE L1 -3196 2687 2635 5 1438 2815 69 3 0 chr3 111878052 111878416 -47721367 + L1Md_F2 LINE L1 5221 5585 -298 5 1438 7553 73 5 4 chr3 111878417 111879409 -47720374 + L1Md_F2 LINE L1 5587 6579 -3 5 1438 485 219 21 0 chr3 111879450 111879546 -47720237 + B3 SINE B2 32 129 -87 5 1438 23 0 0 0 chr3 111879796 111879819 -47719964 + AT_rich Low_complexity Low_complexity 1 23 0 5 1438 372 333 52 105 chr3 111880353 111880544 -47719239 + B3A SINE B2 2 182 -16 5 1438 260 291 82 25 chr3 111880682 111880783 -47719000 + B1_Mur3 SINE Alu 1 105 -15 5 1438 183 42 0 0 chr3 111882246 111882270 -47717513 + (CA)n Simple_repeat Simple_repeat 2 25 0 5 1438 225 65 0 0 chr3 111882785 111882816 -47716967 + (CA)n Simple_repeat Simple_repeat 2 32 0 5 1438 4206 150 31 25 chr3 111882845 111883596 -47716187 - RMER6A LTR ERVK -1 755 1 5 1438 816 208 5 5 chr3 111883639 111883823 -47715960 + L1Md_A LINE L1 619 802 -5922 5 1438 4751 112 5 20 chr3 111883800 111884540 -47715243 + L1_Mus3 LINE L1 5610 6338 -300 5 1438 2880 90 21 0 chr3 111884974 111885361 -47714422 + L1_Mus3 LINE L1 6115 6509 -129 5 1438 2782 124 65 0 chr3 111885361 111885822 -47713961 - ETnERV2-int LTR ERVK -3475 3931 3441 5 1438 1567 204 212 25 chr3 111885838 111886310 -47713473 - ETnERV2-int LTR ERVK -4419 2987 2428 5 1438 3097 178 100 64 chr3 111886309 111887197 -47712586 - MMETn-int LTR ERVK -3675 1169 250 5 1438 221 172 0 33 chr3 111887234 111887294 -47712489 + (TATG)n Simple_repeat Simple_repeat 2 59 0 5 1438 593 281 29 72 chr3 111887830 111888037 -47711746 + ORR1D2 LTR MaLR 169 366 -4 5 1438 890 254 171 31 chr3 111888050 111888378 -47711405 + MTD LTR MaLR 46 401 -18 5 1438 200 227 0 0 chr3 111888502 111888546 -47711237 + T-rich Low_complexity Low_complexity 1 44 0 5 1438 416 248 8 40 chr3 111888562 111888688 -47711095 - RMER1B Other Other -16 1050 929 5 1438 303 278 0 11 chr3 111888972 111889063 -47710720 + (TA)n Simple_repeat Simple_repeat 2 91 0 5 1438 213 255 0 0 chr3 111889296 111889343 -47710440 + A-rich Low_complexity Low_complexity 1 47 0 5 1438 344 338 147 19 chr3 111889940 111890097 -47709686 - B3 SINE B2 -37 179 3 5 1438 285 365 35 0 chr3 111890505 111890620 -47709163 - B1F SINE Alu -13 136 18 5 1438 26 30 0 0 chr3 111890882 111890915 -47708868 + AT_rich Low_complexity Low_complexity 1 33 0 5 1438 235 345 48 60 chr3 111890934 111890988 -47708795 - CYRA11_Mm Unknown Y-chromosome -185 432 382 5 1438 648 265 117 5 chr3 111890988 111891185 -47708598 + URR1A DNA MER1_type 3 221 -5 5 1438 4494 155 36 44 chr3 111891185 111892094 -47707689 - RLTR13D6 LTR ERVK 0 902 1 5 1438 1553 153 4 0 chr3 111892112 111892360 -47707423 - ETnERV3-int LTR ERVK -31 5777 5529 5 1438 2910 173 9 6 chr3 111892360 111892896 -47706887 - ETnERV3-int LTR ERVK -419 5389 4852 5 1438 568 176 55 16 chr3 111892947 111893074 -47706709 + RLTR13D4 LTR ERVK 900 1031 -2 5 1438 2558 76 212 10 chr3 111893265 111893666 -47706117 - RLTR45 LTR ERVK 0 482 1 5 1438 1185 214 68 4 chr3 111893776 111894057 -47705726 + Lx4B LINE L1 6501 6799 -259 5 1438 1391 273 60 112 chr3 111894088 111894658 -47705125 - RLTR1D LTR ERV1 -13 611 72 5 1438 3369 40 51 2 chr3 111894634 111895084 -47704699 - MT-int LTR MaLR -64 1034 563 5 1438 2023 149 220 36 chr3 111896974 111897497 -47702286 - L1_Mur2 LINE L1 -2676 3201 2583 5 1438 226 47 70 0 chr3 111897811 111897854 -47701929 + (TTTTTG)n Simple_repeat Simple_repeat 3 48 0 5 1438 295 352 113 33 chr3 111897854 111898004 -47701779 - MER70B LTR ERVL -416 162 1 5 1438 235 260 0 0 chr3 111898077 111898127 -47701656 - Lx6 LINE L1 -846 6614 6565 5 1438 890 230 25 93 chr3 111898122 111898271 -47701512 + RMER1C Other Other 1083 1212 -130 5 1438 342 0 0 0 chr3 111898271 111898309 -47701474 + (TTA)n Simple_repeat Simple_repeat 2 39 0 5 1438 890 230 25 93 chr3 111898309 111898437 -47701346 + RMER1C Other Other 1213 1341 -1 5 1438 2379 208 31 32 chr3 111898433 111899097 -47700686 + Lx5 LINE L1 5284 5955 -1095 5 1438 407 306 87 40 chr3 111899175 111899451 -47700332 + L1ME3A LINE L1 5694 5982 -191 5 1438 1276 177 4 4 chr3 111901312 111901539 -47698244 - Lx4B LINE L1 -310 6748 6522 5 1438 255 61 0 0 chr3 111901822 111901855 -47697928 + (TA)n Simple_repeat Simple_repeat 1 33 0 5 1438 930 125 15 0 chr3 111901903 111902039 -47697744 + B1_Mus1 SINE Alu 1 138 -10 5 1438 311 364 34 43 chr3 111902342 111902543 -47697240 + B4 SINE B4 90 292 0 5 1438 429 20 0 0 chr3 111902553 111902603 -47697180 + (CA)n Simple_repeat Simple_repeat 1 50 0 5 1438 219 103 0 0 chr3 111902604 111902643 -47697140 + (CAGA)n Simple_repeat Simple_repeat 2 40 0 5 1438 1370 64 113 5 chr3 111903296 111903417 -47696366 + Lx3_Mus LINE L1 5796 5926 -1083 5 1438 414 0 0 0 chr3 111903417 111903463 -47696320 + (CAA)n Simple_repeat Simple_repeat 2 47 0 5 1438 1370 64 113 5 chr3 111903463 111903545 -47696238 + Lx3_Mus LINE L1 5927 6021 -988 5 1438 28 0 0 0 chr3 111904507 111904535 -47695248 + AT_rich Low_complexity Low_complexity 1 28 0 5 1438 1365 304 45 38 chr3 111904958 111905516 -47694267 - Lx6 LINE L1 0 7696 6879 5 1438 594 41 0 0 chr3 111905544 111905617 -47694166 + (TC)n Simple_repeat Simple_repeat 2 74 0 5 1438 3132 191 95 38 chr3 111905684 111905754 -47694029 - L1_Mur3 LINE L1 -3752 2128 2058 5 1438 506 87 0 12 chr3 111905754 111905836 -47693947 + (TG)n Simple_repeat Simple_repeat 1 81 0 5 1438 3132 191 95 38 chr3 111905836 111906146 -47693637 - L1_Mur3 LINE L1 -3823 2057 1764 5 1438 2222 80 3 10 chr3 111906146 111906460 -47693323 - L1Md_F2 LINE L1 -1 6581 6270 5 1438 3132 214 75 27 chr3 111906460 111907165 -47692618 - L1_Mur3 LINE L1 -4117 1763 985 5 1438 400 222 25 41 chr3 111907169 111907291 -47692492 + MTB_Mm LTR MaLR 18 137 -270 5 1438 24 32 0 0 chr3 111907520 111907551 -47692232 + AT_rich Low_complexity Low_complexity 1 31 0 5 1438 373 306 98 88 chr3 111907920 111908124 -47691659 - B4 SINE B4 -73 219 14 5 1438 186 43 0 0 chr3 111908186 111908209 -47691574 + (TCTA)n Simple_repeat Simple_repeat 4 26 0 5 1438 339 221 119 0 chr3 111908611 111908724 -47691059 + L1_Mur2 LINE L1 5502 5662 -506 5 1438 222 118 0 0 chr3 111909323 111909357 -47690426 + (TATATG)n Simple_repeat Simple_repeat 2 35 0 5 1438 969 331 37 35 chr3 111909732 111909922 -47689861 + Lx8 LINE L1 6340 6528 -945 5 1438 1603 214 44 3 chr3 111909922 111910287 -47689496 - ORR1C2 LTR MaLR -4 380 1 5 1438 969 331 37 35 chr3 111910287 111910486 -47689297 + Lx8 LINE L1 6529 6734 -739 5 1438 189 0 0 0 chr3 111910486 111910507 -47689276 + (TG)n Simple_repeat Simple_repeat 2 22 0 5 1438 969 305 296 17 chr3 111910507 111910712 -47689071 + Lx8 LINE L1 6735 6993 -480 5 1438 2129 96 53 0 chr3 111910729 111911030 -47688753 - L1Md_F2 LINE L1 -444 6138 5822 5 1438 3135 75 5 12 chr3 111911030 111911461 -47688322 + L1Md_F2 LINE L1 6150 6577 -5 5 1438 411 351 11 11 chr3 111911462 111911638 -47688145 + Lx8 LINE L1 7024 7199 -274 5 1438 229 273 39 13 chr3 111911778 111911856 -47687927 - Lx7 LINE L1 -663 7033 6954 5 1438 329 331 15 15 chr3 111911892 111912024 -47687759 - B3 SINE B2 0 216 85 5 1438 492 308 72 45 chr3 111912255 111912476 -47687307 - MTE2a LTR MaLR -152 227 1 5 1438 444 147 0 0 chr3 111912888 111912963 -47686820 + (TA)n Simple_repeat Simple_repeat 1 75 0 5 1438 2475 204 101 27 chr3 111913286 111913922 -47685861 + RMER6C LTR ERVK 8 690 0 5 1438 204 40 0 0 chr3 111913941 111913966 -47685817 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 5 1438 1033 144 12 0 chr3 111913966 111914126 -47685657 - B2_Mm2 SINE B2 -33 162 1 5 1438 419 274 8 24 chr3 111914687 111914814 -47684969 + RMER17B LTR ERVK 1 125 -833 5 1438 585 330 70 83 chr3 111914861 111915105 -47684678 + Lx9 LINE L1 6822 7054 -590 5 1438 330 49 32 16 chr3 111915105 111915167 -47684616 + (CAAA)n Simple_repeat Simple_repeat 2 64 0 5 1438 585 330 70 83 chr3 111915167 111915696 -47684087 + Lx9 LINE L1 7055 7585 -59 5 1438 21 82 0 0 chr3 111915808 111915857 -47683926 + AT_rich Low_complexity Low_complexity 1 49 0 5 1438 2937 127 51 2 chr3 111915979 111916451 -47683332 - L1_Mus3 LINE L1 -7 6631 6137 5 1438 3944 71 2 8 chr3 111916470 111916993 -47682790 - L1Md_F2 LINE L1 0 6582 6063 5 1438 24 53 0 0 chr3 111917320 111917358 -47682425 + AT_rich Low_complexity Low_complexity 1 38 0 5 1438 1359 23 35 0 chr3 111917487 111917659 -47682124 - L1Md_F3 LINE L1 -1 6583 6406 5 1438 24 67 0 0 chr3 111917887 111917932 -47681851 + AT_rich Low_complexity Low_complexity 1 45 0 5 1438 3326 33 5 0 chr3 111919512 111919904 -47679879 - MTA_Mm LTR MaLR -2 394 1 5 1438 8702 47 7 5 chr3 111919904 111920999 -47678784 - MTA_Mm-int LTR MaLR 0 1098 1 5 1438 3353 23 8 0 chr3 111920999 111921392 -47678391 - MTA_Mm LTR MaLR 0 396 1 5 1438 278 221 45 28 chr3 111922661 111922838 -47676945 + (TA)n Simple_repeat Simple_repeat 1 180 0 5 1438 23 33 0 0 chr3 111924355 111924385 -47675398 + AT_rich Low_complexity Low_complexity 1 30 0 5 1438 419 336 69 50 chr3 111925444 111925704 -47674079 + RMER15 LTR ERVL 296 560 -15 5 1438 253 208 19 0 chr3 111925724 111925777 -47674006 + MTE2b LTR MaLR 1 54 -325 6 1438 1080 339 105 92 chr3 111925792 111926556 -47673227 + MTE-int LTR MaLR 627 1353 -17 6 1438 345 336 16 56 chr3 111926638 111926764 -47673019 - B1_Mur1 SINE Alu -1 148 28 6 1438 276 96 0 0 chr3 111926931 111926983 -47672800 - Lx LINE L1 0 6654 6603 6 1438 2432 64 15 0 chr3 111926983 111927309 -47672474 - IAPEY_LTR LTR ERVK 0 385 55 6 1438 433 81 13 13 chr3 111927309 111927384 -47672399 - Lx LINE L1 -46 6608 6534 6 1438 23 54 0 0 chr3 111927994 111928031 -47671752 + AT_rich Low_complexity Low_complexity 1 37 0 6 1438 495 260 129 7 chr3 111928031 111928071 -47671712 - MTD LTR MaLR -56 363 325 6 1438 1918 5 0 0 chr3 111928071 111928289 -47671494 + L1Md_A LINE L1 6365 6582 0 6 1438 495 269 113 11 chr3 111928289 111928413 -47671370 - MTD LTR MaLR -95 324 169 6 1438 207 0 0 0 chr3 111928548 111928571 -47671212 + (T)n Simple_repeat Simple_repeat 1 23 0 6 1438 642 314 101 50 chr3 111928599 111928936 -47670847 - Lx9 LINE L1 -195 7449 7118 6 1438 4198 32 2 0 chr3 111928936 111929435 -47670348 - L1Md_F2 LINE L1 -12 6570 6071 6 1438 642 314 101 50 chr3 111929435 111929752 -47670031 - Lx9 LINE L1 -527 7117 6762 6 1438 189 121 0 0 chr3 111929917 111929950 -47669833 + (GTTTG)n Simple_repeat Simple_repeat 3 35 0 6 1438 23 68 0 0 chr3 111930830 111930874 -47668909 + AT_rich Low_complexity Low_complexity 1 44 0 6 1438 335 243 14 0 chr3 111931565 111931635 -47668148 - ID_B1 SINE B4 -3 221 151 6 1438 504 304 0 13 chr3 111932023 111932175 -47667608 + B3A SINE B2 12 159 -57 6 1438 1836 135 40 30 chr3 111932183 111932512 -47667271 + Lx LINE L1 6315 6646 -8 6 1438 2131 194 46 89 chr3 111932603 111933235 -47666548 + L1VL4 LINE L1 206 810 -5492 6 1438 689 125 0 37 chr3 111934270 111934378 -47665405 + B1_Mus1 SINE Alu 5 108 -40 6 1438 593 273 38 5 chr3 111934394 111934578 -47665205 - Lx6 LINE L1 -6 7454 7265 6 1438 253 369 60 7 chr3 111934584 111934734 -47665049 - MTEb LTR MaLR -221 158 1 6 1438 550 262 118 30 chr3 111934734 111934927 -47664856 - MTD-int LTR MaLR -63 1517 1351 6 1438 24 0 0 0 chr3 111935075 111935099 -47664684 + AT_rich Low_complexity Low_complexity 1 24 0 6 1438 405 229 20 73 chr3 111935102 111935253 -47664530 - Lx6 LINE L1 -30 7430 7288 6 1439 753 284 67 72 chr3 111935577 111935960 -47663823 - RLTR26 LTR ERVK -227 415 2 6 1439 374 255 41 31 chr3 111935973 111936070 -47663713 + 7SLRNA srpRNA srpRNA 137 234 -80 6 1439 2011 121 76 83 chr3 111936348 111936744 -47663039 + RLTR9C LTR ERVK 1 393 0 6 1439 471 275 74 42 chr3 111936938 111937128 -47662655 - MTD LTR MaLR 0 419 224 6 1439 323 318 98 13 chr3 111937109 111937262 -47662521 - MTD-int LTR MaLR -1384 196 31 6 1439 1143 268 95 24 chr3 111937293 111937671 -47662112 - MTD LTR MaLR -14 405 1 6 1439 3105 165 8 18 chr3 111937849 111938360 -47661423 - Lx4A LINE L1 -139 6919 6414 6 1439 1970 219 23 14 chr3 111938362 111938793 -47660990 + Lx4A LINE L1 5985 6419 -639 6 1439 548 310 62 98 chr3 111939097 111939520 -47660263 - RLTR26 LTR ERVK -191 451 1 6 1439 198 103 0 0 chr3 111939838 111939867 -47659916 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 6 1439 222 37 0 0 chr3 111940616 111940643 -47659140 + (TG)n Simple_repeat Simple_repeat 2 28 0 6 1439 21 0 0 0 chr3 111941545 111941566 -47658217 + AT_rich Low_complexity Low_complexity 1 21 0 6 1439 528 277 14 118 chr3 111941604 111941825 -47657958 - RMER5 LTR ERV1 -328 206 9 6 1439 2300 190 38 54 chr3 111941828 111942335 -47657448 + RLTR25A LTR ERVK 1 502 -601 6 1439 206 32 0 31 chr3 111942335 111942367 -47657416 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 6 1439 2300 190 38 54 chr3 111942367 111942381 -47657402 + RLTR25A LTR ERVK 503 514 -589 6 1439 1089 71 0 0 chr3 111942381 111942522 -47657261 - B1_Mus1 SINE Alu 0 148 8 6 1439 585 206 6 82 chr3 111942522 111942538 -47657245 - ID_B1 SINE B4 0 222 78 6 1439 1855 213 80 31 chr3 111942547 111943108 -47656675 + RLTR25A LTR ERVK 450 967 -136 6 1439 2871 74 5 20 chr3 111943108 111943510 -47656273 + MTA_Mm LTR MaLR 1 396 0 6 1439 550 286 44 98 chr3 111943510 111943615 -47656168 + RLTR25A LTR ERVK 925 1028 0 6 1439 698 217 14 20 chr3 111943948 111944094 -47655689 + B1_Mur3 SINE Alu 5 149 0 6 1439 204 40 0 0 chr3 111944174 111944199 -47655584 + (TAA)n Simple_repeat Simple_repeat 3 27 0 6 1439 2273 297 54 27 chr3 111945234 111946043 -47653740 + Lx7 LINE L1 6251 6658 -1038 6 1439 500 68 14 0 chr3 111946043 111946116 -47653667 + (TA)n Simple_repeat Simple_repeat 2 75 0 6 1439 2273 316 59 33 chr3 111946116 111946371 -47653412 + Lx7 LINE L1 6659 6937 -759 6 1439 986 189 168 18 chr3 111946371 111946651 -47653132 + RLTRETN_Mm LTR ERVK 1 322 0 6 1439 2273 316 59 33 chr3 111946651 111947036 -47652747 + Lx7 LINE L1 6938 7327 -369 6 1439 348 24 0 0 chr3 111947076 111947117 -47652666 + (TG)n Simple_repeat Simple_repeat 1 41 0 6 1439 513 0 0 0 chr3 111947117 111947173 -47652610 + (GA)n Simple_repeat Simple_repeat 1 57 0 6 1439 1096 75 7 0 chr3 111947229 111947375 -47652408 + B1_Mm SINE Alu 1 147 0 6 1439 391 339 26 0 chr3 111947418 111947533 -47652250 - B3A SINE B2 -80 118 1 6 1439 23 54 0 0 chr3 111948053 111948090 -47651693 + AT_rich Low_complexity Low_complexity 1 37 0 6 1439 6918 202 74 91 chr3 111948113 111948675 -47651108 - L1_Mus3 LINE L1 -14 6983 6349 6 1439 3393 18 8 0 chr3 111948675 111949068 -47650715 + MTA_Mm LTR MaLR 1 396 0 6 1439 6918 111 23 17 chr3 111949068 111950051 -47649732 - L1_Mus3 LINE L1 -161 6477 5513 6 1439 298 397 7 30 chr3 111950922 111951057 -47648726 + ID_B1 SINE B4 86 217 -7 6 1439 228 260 0 0 chr3 111951060 111951110 -47648673 + GA-rich Low_complexity Low_complexity 1 50 0 6 1439 2000 188 50 8 chr3 111951180 111951581 -47648202 - MTC LTR MaLR -1 420 3 6 1439 359 322 0 47 chr3 111951748 111951875 -47647908 + B3 SINE B2 1 121 -95 6 1439 342 0 0 0 chr3 111952036 111952074 -47647709 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 6 1439 1701 222 3 25 chr3 111952086 111952450 -47647333 - Lx4A LINE L1 -10 7048 6693 6 1439 1126 132 44 31 chr3 111952451 111952678 -47647105 - RLTR9E LTR ERVK 0 409 180 6 1439 332 107 0 18 chr3 111952675 111952732 -47647051 - RLTR9E LTR ERVK -353 56 1 6 1439 5111 168 7 11 chr3 111952738 111953611 -47646172 - Lx4A LINE L1 -368 6690 5822 6 1439 527 170 11 0 chr3 111953598 111953692 -47646091 - Lx4A LINE L1 -1352 5706 5612 6 1439 234 176 18 89 chr3 111953692 111953748 -47646035 - MLT2C1 LTR ERVL -142 255 204 6 1439 1387 173 25 0 chr3 111953750 111953993 -47645790 - Lx4A LINE L1 -330 5547 5299 6 1439 1406 93 40 36 chr3 111953991 111954140 -47645643 + L1_Mus2 LINE L1 5945 6099 -467 6 1439 2995 29 0 0 chr3 111954140 111954486 -47645297 - ORR1A0 LTR MaLR 0 346 1 6 1439 1406 93 40 36 chr3 111954486 111954558 -47645225 + L1_Mus2 LINE L1 6100 6167 -399 6 1439 35402 46 0 4 chr3 111954545 111959898 -47639885 + L1Md_T LINE L1 160 5589 -297 6 1439 8322 38 0 0 chr3 111959898 111960893 -47638890 + L1Md_T LINE L1 5590 6584 -1 6 1439 3198 81 2 0 chr3 111960916 111961338 -47638445 + L1_Mus2 LINE L1 6144 6566 0 6 1439 42 20 0 0 chr3 111961373 111961422 -47638361 + AT_rich Low_complexity Low_complexity 1 49 0 6 1439 2546 145 55 2 chr3 111961511 111961987 -47637796 - Lx4A LINE L1 -589 5288 4788 6 1439 370 105 0 0 chr3 111962002 111962059 -47637724 + L1_Mur2 LINE L1 4680 4736 -1141 6 1439 8534 89 6 11 chr3 111962062 111964007 -47635776 + L1_Mus2 LINE L1 4629 6560 -6 6 1439 244 74 0 69 chr3 111964044 111964102 -47635681 + (CAAAAA)n Simple_repeat Simple_repeat 2 55 0 6 1439 193 75 50 0 chr3 111964520 111964560 -47635223 + (TA)n Simple_repeat Simple_repeat 1 42 0 6 1439 1785 313 37 14 chr3 111964763 111965336 -47634447 - Lx5 LINE L1 0 7050 6465 6 1439 6830 206 37 11 chr3 111965670 111967668 -47632115 - Lx5 LINE L1 -625 6425 4349 6 1439 859 121 30 6 chr3 111967668 111967838 -47631945 + RLTR9C LTR ERVK 240 409 0 6 1439 1585 209 0 28 chr3 111967849 111968203 -47631580 - Lx5 LINE L1 -1681 4196 3853 6 1439 300 226 54 7 chr3 111968214 111968361 -47631422 + (TA)n Simple_repeat Simple_repeat 2 155 0 6 1439 423 106 0 0 chr3 111968942 111969008 -47630775 + (TG)n Simple_repeat Simple_repeat 1 66 0 6 1439 288 91 0 0 chr3 111969261 111969305 -47630478 + (TC)n Simple_repeat Simple_repeat 2 45 0 6 1439 2565 53 0 3 chr3 111970930 111971250 -47628533 + L1Md_F2 LINE L1 6244 6562 -20 6 1439 450 0 0 0 chr3 111971254 111971304 -47628479 + (TAAAA)n Simple_repeat Simple_repeat 4 53 0 6 1439 390 74 0 0 chr3 111971380 111971434 -47628349 + (CA)n Simple_repeat Simple_repeat 1 54 0 6 1439 441 0 0 0 chr3 111972035 111972084 -47627699 + (TAA)n Simple_repeat Simple_repeat 2 50 0 6 1439 25 83 0 0 chr3 111972211 111972271 -47627512 + AT_rich Low_complexity Low_complexity 1 60 0 6 1439 216 135 0 0 chr3 111972344 111972381 -47627402 + (CA)n Simple_repeat Simple_repeat 2 38 0 6 1439 468 342 66 30 chr3 111972390 111972691 -47627092 - Lx9 LINE L1 -136 7508 7197 6 1439 582 285 48 4 chr3 111972717 111972946 -47626837 - L1_Mur3 LINE L1 -1995 3885 3647 6 1439 249 268 0 0 chr3 111972953 111973009 -47626774 - ORR1D1 LTR MaLR -318 56 1 6 1439 241 312 108 61 chr3 111973018 111973105 -47626678 - L1_Rod LINE L1 -2193 3654 3577 6 1439 1231 95 16 22 chr3 111973105 111973288 -47626495 + B2_Mm2 SINE B2 2 183 -12 6 1439 241 312 108 61 chr3 111973288 111973579 -47626204 - L1_Rod LINE L1 -2271 3576 3258 6 1439 1354 290 110 33 chr3 111973579 111974449 -47625334 + L1_Rod LINE L1 4395 5331 -516 6 1439 5450 174 34 7 chr3 111974439 111975994 -47623789 + Lx3C LINE L1 4829 6415 -561 6 1439 2369 70 0 0 chr3 111976033 111976334 -47623449 + L1Md_F3 LINE L1 5286 5586 -297 6 1439 7948 40 9 3 chr3 111976334 111977325 -47622458 + L1Md_F3 LINE L1 5587 6583 -1 6 1439 228 67 0 0 chr3 111977355 111977385 -47622398 + (GAAAA)n Simple_repeat Simple_repeat 2 31 0 6 1439 485 284 85 30 chr3 111977748 111977948 -47621835 + B3A SINE B2 6 216 0 6 1439 24 53 0 0 chr3 111978413 111978451 -47621332 + AT_rich Low_complexity Low_complexity 1 38 0 6 1439 1294 174 30 9 chr3 111979099 111979331 -47620452 + L1VL4 LINE L1 1 237 -6065 6 1439 11294 104 62 13 chr3 111979334 111980943 -47618840 + MusHAL1 LINE L1 224 1927 -785 6 1439 183 42 0 0 chr3 111980943 111980967 -47618816 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 6 1439 11294 104 62 13 chr3 111980967 111981262 -47618521 + MusHAL1 LINE L1 1928 2222 -490 6 1439 5158 142 3 31 chr3 111981313 111981546 -47618237 + Lx2 LINE L1 5743 5964 -1033 6 1439 3433 62 0 5 chr3 111981546 111981986 -47617797 + L1_Mus1 LINE L1 6129 6566 -1 6 1439 5158 142 3 31 chr3 111981986 111982630 -47617153 + Lx2 LINE L1 5965 6596 -401 6 1439 1101 63 0 7 chr3 111983100 111983244 -47616539 + B1_Mus1 SINE Alu 1 143 -5 6 1439 21 0 0 0 chr3 111983504 111983525 -47616258 + AT_rich Low_complexity Low_complexity 1 21 0 6 1439 497 267 157 24 chr3 111984047 111984296 -47615487 + Lx9 LINE L1 6157 6438 -1206 6 1439 1989 251 41 2 chr3 111984300 111984831 -47614952 + Lx9 LINE L1 7091 7642 -2 6 1439 627 211 24 18 chr3 111985476 111985640 -47614143 - Lx7 LINE L1 0 7696 7532 6 1439 26 30 0 0 chr3 111986003 111986036 -47613747 + AT_rich Low_complexity Low_complexity 1 33 0 6 1439 599 26 13 0 chr3 111986147 111986224 -47613559 + (TCTA)n Simple_repeat Simple_repeat 3 80 0 6 1439 245 169 17 0 chr3 111986257 111986316 -47613467 + (TA)n Simple_repeat Simple_repeat 2 61 0 6 1439 21 36 0 0 chr3 111987088 111987116 -47612667 + AT_rich Low_complexity Low_complexity 1 28 0 7 1439 25 51 0 0 chr3 111987610 111987649 -47612134 + AT_rich Low_complexity Low_complexity 1 39 0 7 1439 23 0 0 0 chr3 111987677 111987700 -47612083 + AT_rich Low_complexity Low_complexity 1 23 0 7 1439 23 68 0 0 chr3 111988037 111988081 -47611702 + AT_rich Low_complexity Low_complexity 1 44 0 7 1439 328 43 0 0 chr3 111988358 111988405 -47611378 - MusHAL1 LINE L1 -2780 574 528 7 1439 38217 57 4 7 chr3 111988412 111995759 -47604024 - L1Md_T LINE L1 0 7000 1 7 1439 675 271 23 53 chr3 111995804 111996104 -47603679 - RLTR15 LTR ERVK -20 339 49 7 1439 4465 36 0 0 chr3 111996112 111996640 -47603143 - L1Md_T LINE L1 0 6582 6055 7 1439 274 29 0 0 chr3 111996640 111996674 -47603109 + L1Md_F2 LINE L1 6018 6051 -531 7 1439 242 224 35 0 chr3 111996674 111996732 -47603051 - RLTR15 LTR ERVK -294 65 6 7 1439 21 0 0 0 chr3 111997306 111997327 -47602456 + AT_rich Low_complexity Low_complexity 1 21 0 7 1439 677 361 65 60 chr3 111998566 111999410 -47600373 + L1M4c LINE L1 839 1686 -4698 7 1439 282 106 0 0 chr3 111999741 111999788 -47599995 + (CA)n Simple_repeat Simple_repeat 2 48 0 7 1439 693 135 0 0 chr3 111999788 111999914 -47599869 + (GA)n Simple_repeat Simple_repeat 1 126 0 7 1439 330 279 109 23 chr3 112000134 112000354 -47599429 + L1M4c LINE L1 2052 2290 -4094 1 1439 339 328 165 15 chr3 112000594 112000866 -47598917 + MLT1A0 LTR MaLR 1 313 -52 2 1439 698 279 127 14 chr3 112001098 112001355 -47598428 - MTD LTR MaLR -23 396 133 3 1439 1401 222 124 12 chr3 112001423 112001809 -47597974 - RMER1B Other Other -587 479 16 4 1439 1925 184 6 3 chr3 112002230 112002573 -47597210 - Lx4A LINE L1 -1 7057 6714 5 1439 1332 161 16 24 chr3 112002573 112002822 -47596961 - L1_Mur2 LINE L1 -167 5710 5464 6 1439 2376 189 62 8 chr3 112002822 112003292 -47596491 + RMER13A LTR ERVK 1 495 -365 7 1439 767 291 8 58 chr3 112003299 112003540 -47596243 + RMER13A LTR ERVK 632 860 0 7 1439 11065 210 46 110 chr3 112003541 112007262 -47592521 - L1_Mur2 LINE L1 -409 5468 2065 6 1439 219 103 0 0 chr3 112007262 112007301 -47592482 + (TG)n Simple_repeat Simple_repeat 1 39 0 8 1439 11065 198 80 56 chr3 112007301 112008684 -47591099 - L1_Mur2 LINE L1 -3813 2064 580 6 1439 234 0 0 0 chr3 112008709 112008735 -47591048 + (TA)n Simple_repeat Simple_repeat 2 27 0 9 1439 303 378 45 0 chr3 112008738 112008849 -47590934 - B3A SINE B2 -18 180 65 1 1439 615 311 207 10 chr3 112008913 112009212 -47590571 - Lx6 LINE L1 -9 7451 7094 1 1439 708 35 0 0 chr3 112009384 112009471 -47590312 + (CA)n Simple_repeat Simple_repeat 2 88 0 1 1439 307 267 96 0 chr3 112009519 112009654 -47590129 - L1MA4 LINE L1 -416 5884 5737 1 1439 694 242 143 0 chr3 112009681 112009863 -47589920 - B3 SINE B2 0 216 9 1 1439 521 306 152 31 chr3 112010498 112010788 -47588995 + MLT1A1 LTR MaLR 43 367 -41 1 1439 1365 187 15 7 chr3 112010790 112011060 -47588723 - RMER6D LTR ERVK -2 688 417 1 1439 2271 227 137 16 chr3 112011207 112011812 -47587971 + RLTR33 LTR ERVK 1 678 0 1 1439 1508 167 8 136 chr3 112011813 112012064 -47587719 - RMER6D LTR ERVK -292 428 220 1 1439 2925 89 37 0 chr3 112012064 112012470 -47587313 - BGLII LTR ERVK 0 421 1 1 1439 1508 167 8 136 chr3 112012470 112012586 -47587197 - RMER6D LTR ERVK -501 219 108 1 1439 203 0 0 36 chr3 112012630 112012658 -47587125 + (TTTG)n Simple_repeat Simple_repeat 1 27 0 1 1439 679 141 62 0 chr3 112013198 112013326 -47586457 + Lx3A LINE L1 6846 6981 0 2 1439 26 0 0 0 chr3 112014714 112014740 -47585043 + AT_rich Low_complexity Low_complexity 1 26 0 2 1439 7291 61 16 2 chr3 112014740 112015682 -47584101 - L1Md_F2 LINE L1 -10 6572 5618 2 1439 1863 71 0 0 chr3 112015679 112015918 -47583865 + L1Md_F2 LINE L1 5381 5619 -264 2 1439 1232 210 4 0 chr3 112016241 112016484 -47583299 - Lx9 LINE L1 -628 7016 6773 2 1439 306 297 0 0 chr3 112016483 112016574 -47583209 + Lx9 LINE L1 7100 7190 -454 2 1439 418 307 43 9 chr3 112016903 112017018 -47582765 - B1F2 SINE Alu -21 128 10 2 1439 312 420 0 32 chr3 112017338 112017557 -47582226 + Tigger5 DNA MER2_type 48 259 -2147 2 1439 253 350 57 7 chr3 112017538 112017679 -47582104 + Tigger5 DNA MER2_type 2154 2301 -105 2 1439 342 265 0 30 chr3 112017778 112017879 -47581904 + (TATG)n Simple_repeat Simple_repeat 3 100 0 2 1439 486 0 0 0 chr3 112018088 112018142 -47581641 + (CA)n Simple_repeat Simple_repeat 2 55 0 2 1439 180 234 0 0 chr3 112018142 112018189 -47581594 + CT-rich Low_complexity Low_complexity 2 48 0 2 1439 360 336 81 45 chr3 112019717 112020050 -47579733 - L1MC LINE L1 -934 5212 4868 3 1439 393 248 90 90 chr3 112020153 112020441 -47579342 - L1MC LINE L1 -2486 3660 3373 3 1439 476 294 28 79 chr3 112020605 112020782 -47579001 - B3A SINE B2 0 198 31 3 1439 23 54 0 0 chr3 112020824 112020861 -47578922 + AT_rich Low_complexity Low_complexity 1 37 0 3 1439 290 98 0 19 chr3 112020998 112021050 -47578733 + (TTTG)n Simple_repeat Simple_repeat 4 54 0 3 1439 1089 62 14 7 chr3 112021050 112021196 -47578587 - B1_Mm SINE Alu 0 147 1 3 1439 189 196 0 0 chr3 112022447 112022498 -47577285 + A-rich Low_complexity Low_complexity 1 51 0 3 1439 2171 51 4 4 chr3 112022638 112022913 -47576870 + L1_Mus2 LINE L1 6291 6565 -1 3 1439 669 181 0 0 chr3 112023139 112023272 -47576511 + (TG)n Simple_repeat Simple_repeat 2 134 0 3 1439 216 111 0 0 chr3 112023446 112023482 -47576301 + (TA)n Simple_repeat Simple_repeat 2 37 0 3 1439 246 128 0 0 chr3 112023672 112023711 -47576072 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 3 1439 387 89 0 0 chr3 112023720 112023776 -47576007 + (CA)n Simple_repeat Simple_repeat 2 57 0 4 1439 661 270 47 13 chr3 112023798 112024034 -47575749 - Lx7 LINE L1 -476 7220 6977 4 1439 1103 267 60 13 chr3 112025071 112025371 -47574412 - MLT2C1 LTR ERVL -70 327 14 4 1439 302 324 0 0 chr3 112025437 112025508 -47574275 - ID4_ SINE ID -1 82 12 4 1439 285 327 77 0 chr3 112025527 112025631 -47574152 - B1F SINE Alu -1 148 37 4 1439 5141 170 4 13 chr3 112025949 112026874 -47572909 + Lx2B LINE L1 6078 6994 -6 4 1439 993 251 31 124 chr3 112026966 112027289 -47572494 - RMER15 LTR ERVL -282 293 1 4 1439 201 74 0 0 chr3 112027387 112027414 -47572369 + (TTTTC)n Simple_repeat Simple_repeat 3 29 0 4 1439 21 0 0 0 chr3 112027659 112027680 -47572103 + AT_rich Low_complexity Low_complexity 1 21 0 4 1439 21 0 0 0 chr3 112027713 112027734 -47572049 + AT_rich Low_complexity Low_complexity 1 21 0 4 1439 2945 259 69 15 chr3 112027766 112028552 -47571231 + Lx6 LINE L1 6178 7005 -455 5 1439 989 180 0 0 chr3 112028549 112028721 -47571062 - Lx2 LINE L1 -643 6354 6183 5 1439 8165 46 1 2 chr3 112028744 112029836 -47569947 - L1Md_F2 LINE L1 0 6582 5492 5 1439 1927 180 55 17 chr3 112029836 112030254 -47569529 - Lx2 LINE L1 -800 6197 5764 5 1439 3212 166 54 3 chr3 112030255 112030852 -47568931 + Lx2 LINE L1 6371 6997 0 5 1439 346 276 23 0 chr3 112030852 112030939 -47568844 + Lx6 LINE L1 6988 7076 -384 5 1439 377 344 131 0 chr3 112031084 112031244 -47568539 - B3A SINE B2 -15 183 3 5 1439 26 74 0 0 chr3 112031415 112031469 -47568314 + AT_rich Low_complexity Low_complexity 1 54 0 5 1439 2374 156 30 7 chr3 112032946 112033384 -47566399 - Lx2 LINE L1 -15 6982 6535 5 1439 2377 177 3 11 chr3 112033384 112033868 -47565915 + Lx2 LINE L1 5471 5948 -1025 5 1439 717 200 64 0 chr3 112034235 112034360 -47565423 - ETnERV2-int LTR ERVK -204 7202 7070 5 1439 3258 191 9 3 chr3 112034362 112034992 -47564791 + Lx2 LINE L1 5916 6549 -448 5 1439 243 0 0 0 chr3 112035067 112035094 -47564689 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 5 1439 201 39 0 0 chr3 112035920 112035946 -47563837 + (TG)n Simple_repeat Simple_repeat 2 27 0 5 1439 390 114 0 0 chr3 112036263 112036333 -47563450 + (GA)n Simple_repeat Simple_repeat 2 71 0 6 1439 333 149 0 0 chr3 112036336 112036403 -47563380 + (TG)n Simple_repeat Simple_repeat 2 68 0 6 1439 21 0 0 0 chr3 112036903 112036924 -47562859 + AT_rich Low_complexity Low_complexity 1 21 0 6 1439 876 90 16 0 chr3 112038417 112038539 -47561244 - L1_Mus2 LINE L1 -460 6106 5983 6 1439 3415 78 0 43 chr3 112038539 112039032 -47560751 + L1_Mus2 LINE L1 6094 6565 -1 6 1439 542 318 51 125 chr3 112041061 112041400 -47558383 + MTEa LTR MaLR 1 320 -59 6 1439 817 17 17 0 chr3 112041400 112041516 -47558267 + L1Md_F2 LINE L1 6465 6582 0 6 1439 542 318 51 125 chr3 112041516 112041585 -47558198 + MTEa LTR MaLR 321 379 0 6 1439 1534 189 162 65 chr3 112042681 112043115 -47556668 + RLTR20B3 LTR ERVK 5 484 -93 6 1439 240 35 0 0 chr3 112043115 112043144 -47556639 + (TG)n Simple_repeat Simple_repeat 2 30 0 6 1439 1534 189 162 65 chr3 112043144 112043173 -47556610 + RLTR20B3 LTR ERVK 485 513 -64 6 1439 227 203 0 30 chr3 112043413 112043479 -47556304 + Lx7 LINE L1 7633 7696 0 6 1439 284 247 158 21 chr3 112043522 112043617 -47556166 - MER44A DNA MER2_type -222 117 10 6 1439 315 127 0 0 chr3 112043647 112043710 -47556073 + (TC)n Simple_repeat Simple_repeat 2 64 0 7 1439 3769 169 153 24 chr3 112045547 112046416 -47553367 + RLTR13C1 LTR ERVK 3 983 0 7 1439 25 65 0 0 chr3 112047105 112047151 -47552632 + AT_rich Low_complexity Low_complexity 1 46 0 7 1439 24 53 0 0 chr3 112047197 112047235 -47552548 + AT_rich Low_complexity Low_complexity 1 38 0 7 1439 1880 211 76 72 chr3 112048232 112048718 -47551065 - RLTR19 LTR ERVK -2 497 10 7 1439 1729 141 60 3 chr3 112048815 112049114 -47550669 + Lx2 LINE L1 6681 6996 -1 7 1439 477 311 56 29 chr3 112049399 112049639 -47550144 - Lx7 LINE L1 -16 7680 7204 7 1439 761 161 12 0 chr3 112049853 112050015 -47549768 + GA-rich Low_complexity Low_complexity 2 165 0 7 1439 195 129 0 0 chr3 112050018 112050049 -47549734 + (TTC)n Simple_repeat Simple_repeat 1 31 0 7 1439 380 261 61 26 chr3 112050050 112050164 -47549619 - Lx7 LINE L1 -676 7020 6903 7 1439 440 173 0 0 chr3 112050160 112050235 -47549548 - L1_Mur2 LINE L1 -738 5139 5065 7 1439 1215 252 53 7 chr3 112050258 112050562 -47549221 + Lx2B LINE L1 6308 6625 -375 8 1439 1416 253 68 56 chr3 112050686 112051031 -47548752 - Lx7 LINE L1 -1496 6200 5839 7 1439 6241 92 3 11 chr3 112051031 112051917 -47547866 - Lx3_Mus LINE L1 0 7009 6131 8 1439 4830 202 50 28 chr3 112051917 112053133 -47546650 - Lx7 LINE L1 -1858 5838 4596 7 1439 4933 133 72 57 chr3 112053155 112053226 -47546557 - Lx3A LINE L1 -5 6976 6906 8 1439 216 0 0 0 chr3 112053226 112053250 -47546533 + (CACCC)n Simple_repeat Simple_repeat 3 26 0 8 1439 4933 133 72 57 chr3 112053250 112054132 -47545651 - Lx3A LINE L1 -76 6905 6010 8 1439 279 0 0 0 chr3 112054188 112054219 -47545564 + (TG)n Simple_repeat Simple_repeat 2 32 0 8 1439 2055 168 130 26 chr3 112054242 112054749 -47545034 - Lx7 LINE L1 -1429 4451 3892 7 1439 35 78 0 0 chr3 112054806 112054883 -47544900 + AT_rich Low_complexity Low_complexity 1 77 0 8 1439 4285 143 24 0 chr3 112056393 112057094 -47542689 - Lx2 LINE L1 -6 6991 6274 8 1439 406 387 6 51 chr3 112057441 112057599 -47542184 + RSINE1 SINE B4 3 153 -12 8 1439 225 65 0 0 chr3 112057613 112057644 -47542139 + (CA)n Simple_repeat Simple_repeat 2 32 0 8 1439 239 325 42 34 chr3 112057757 112057875 -47541908 - Tigger7 DNA MER2_type -2083 408 290 8 1439 714 152 0 0 chr3 112058245 112058370 -47541413 + (TG)n Simple_repeat Simple_repeat 2 126 0 9 1439 251 271 48 51 chr3 112058391 112058514 -47541269 - B1F SINE Alu 0 150 33 9 1439 216 0 0 0 chr3 112058745 112058769 -47541014 + (TTA)n Simple_repeat Simple_repeat 2 25 0 9 1439 3366 139 6 0 chr3 112058769 112059287 -47540496 - Lx2A1 LINE L1 -4 7004 6484 9 1439 22 0 0 0 chr3 112059418 112059440 -47540343 + AT_rich Low_complexity Low_complexity 1 22 0 9 1439 509 246 174 41 chr3 112059540 112059856 -47539927 + Lx9 LINE L1 7279 7636 -8 9 1439 1271 49 0 0 chr3 112060015 112060178 -47539605 - L1Md_T LINE L1 0 6582 6420 9 1439 250 302 31 0 chr3 112060224 112060320 -47539463 - MER57D LTR ERV1 0 411 313 9 1439 374 284 58 93 chr3 112060315 112060574 -47539209 - MER57D LTR ERV1 -59 352 67 9 1439 367 314 168 31 chr3 112061312 112061473 -47538310 + ID_B1 SINE B4 10 192 -32 9 1439 530 319 0 65 chr3 112062280 112062448 -47537335 + RSINE1 SINE B4 5 161 -4 9 1439 263 348 97 71 chr3 112062758 112062996 -47536787 + B4 SINE B4 22 265 -27 1 1439 483 18 0 0 chr3 112064629 112064685 -47535098 + (TG)n Simple_repeat Simple_repeat 2 57 0 1 1439 386 381 43 48 chr3 112064746 112065171 -47534612 + MLT2B2 LTR ERVL 73 501 -53 1 1439 393 58 0 0 chr3 112065206 112065258 -47534525 + (CA)n Simple_repeat Simple_repeat 1 52 0 1 1439 317 24 24 0 chr3 112065479 112065521 -47534262 + (TAAA)n Simple_repeat Simple_repeat 4 46 0 1 179 5794 118 16 8 chr3 112066342 112067241 -47532542 + Lx LINE L1 5735 6640 -14 1 1440 23 0 0 0 chr3 112067241 112067264 -47532519 + AT_rich Low_complexity Low_complexity 1 23 0 1 1440 1448 97 13 22 chr3 112067265 112067496 -47532287 - L1Md_F2 LINE L1 -5 6577 6349 1 1440 7447 90 45 4 chr3 112067496 112068914 -47530869 + L1Md_F LINE L1 491 1967 -3916 1 1440 252 0 0 0 chr3 112068914 112068942 -47530841 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 1 1440 7447 77 8 5 chr3 112068942 112069232 -47530551 + L1Md_F LINE L1 1968 2261 -3622 1 1440 4410 14 0 0 chr3 112069316 112069809 -47529974 + MT2_Mm LTR ERVL 1 493 0 1 1440 288 288 37 12 chr3 112070258 112070339 -47529444 - ID4_ SINE ID 0 83 1 1 1440 992 275 55 31 chr3 112070405 112070892 -47528891 + L1M3 LINE L1 2685 3183 -2957 1 1440 1661 281 14 30 chr3 112070929 112071355 -47528428 + MTD LTR MaLR 1 419 0 1 1440 582 176 0 0 chr3 112071365 112071484 -47528299 + GA-rich Low_complexity Low_complexity 4 122 0 1 1440 383 335 60 4 chr3 112071485 112071719 -47528064 + L1M3 LINE L1 3249 3495 -2648 1 1440 1163 194 14 0 chr3 112071826 112072048 -47527735 + URR1B DNA MER1_type 1 225 0 1 1440 1862 45 49 0 chr3 112073217 112073460 -47526323 - L1Md_F2 LINE L1 -2 6580 6326 1 1440 21 82 0 0 chr3 112074436 112074485 -47525298 + AT_rich Low_complexity Low_complexity 1 49 0 1 1440 2329 149 17 5 chr3 112074776 112075181 -47524602 + L1Md_T LINE L1 4553 4962 -921 1 1440 21 36 0 0 chr3 112075435 112075463 -47524320 + AT_rich Low_complexity Low_complexity 1 28 0 1 1440 238 179 29 15 chr3 112076002 112076070 -47523713 + (TTTG)n Simple_repeat Simple_repeat 4 72 0 1 1440 933 124 38 27 chr3 112076397 112076580 -47523203 + L1_Mus3 LINE L1 6454 6638 0 1 1440 32 0 0 0 chr3 112076714 112076746 -47523037 + AT_rich Low_complexity Low_complexity 1 32 0 1 1440 1030 61 0 2 chr3 112077391 112077529 -47522254 + L1Md_T LINE L1 5464 5615 -697 1 1440 8403 29 1 0 chr3 112077529 112078524 -47521259 + L1Md_T LINE L1 5587 6582 0 1 1440 216 0 0 0 chr3 112078544 112078568 -47521215 + (A)n Simple_repeat Simple_repeat 1 24 0 1 1440 211 200 0 0 chr3 112079096 112079146 -47520637 + (CAAA)n Simple_repeat Simple_repeat 2 51 0 1 1440 498 103 0 0 chr3 112080163 112080241 -47519542 + (TG)n Simple_repeat Simple_repeat 1 78 0 1 1440 351 18 35 18 chr3 112080451 112080508 -47519275 + (CAAAAA)n Simple_repeat Simple_repeat 2 59 0 1 1440 278 333 0 12 chr3 112082977 112083059 -47516724 - ID4 SINE ID 0 83 3 1 1440 347 238 90 22 chr3 112083175 112083299 -47516484 - MTEa LTR MaLR 0 419 232 1 1440 1837 82 4 4 chr3 112083312 112083570 -47516213 + L1_Mus2 LINE L1 6308 6565 -1 1 1440 35272 35 0 0 chr3 112084022 112089262 -47510521 + L1Md_T LINE L1 253 5589 -297 1 1440 8910 5 0 0 chr3 112089262 112090258 -47509525 + L1Md_T LINE L1 5590 6585 0 1 1440 208 307 0 0 chr3 112090723 112090798 -47508985 + (TA)n Simple_repeat Simple_repeat 2 76 0 1 1440 689 314 21 10 chr3 112091062 112091255 -47508528 + B3 SINE B2 1 195 -21 1 1440 433 314 132 14 chr3 112091557 112091770 -47508013 - ORR1D2 LTR MaLR 0 370 133 1 1440 270 56 0 0 chr3 112092124 112092160 -47507623 + (CCA)n Simple_repeat Simple_repeat 3 38 0 1 1440 837 348 90 36 chr3 112093342 112093951 -47505832 - Lx9 LINE L1 -467 7177 6536 1 1440 408 323 10 44 chr3 112094312 112094516 -47505267 + Lx7 LINE L1 6113 6309 -1387 1 1440 571 305 89 83 chr3 112094536 112094908 -47504875 + Lx7 LINE L1 6885 7258 -438 1 1440 252 0 0 0 chr3 112094939 112094967 -47504816 + (TG)n Simple_repeat Simple_repeat 1 28 0 1 1440 594 0 0 0 chr3 112094967 112095032 -47504751 + (GA)n Simple_repeat Simple_repeat 1 66 0 1 1440 600 176 0 0 chr3 112095041 112095172 -47504611 + (TG)n Simple_repeat Simple_repeat 2 132 0 1 1440 246 62 0 0 chr3 112095745 112095777 -47504006 + (TA)n Simple_repeat Simple_repeat 2 33 0 1 1440 387 314 55 48 chr3 112095874 112096185 -47503598 - L1M4 LINE L1 -912 5234 4922 1 1440 277 376 52 86 chr3 112096218 112096439 -47503344 - MTEa LTR MaLR -8 371 163 1 1440 342 0 0 0 chr3 112096439 112096477 -47503306 + (TTTAA)n Simple_repeat Simple_repeat 3 40 0 1 1440 277 376 52 86 chr3 112096477 112096604 -47503179 - MTEa LTR MaLR -217 162 35 1 1440 22 56 0 0 chr3 112097715 112097751 -47502032 + AT_rich Low_complexity Low_complexity 1 36 0 1 1440 686 98 33 0 chr3 112097777 112097899 -47501884 - L1_Mus2 LINE L1 -1 6565 6440 1 1440 3539 92 58 23 chr3 112097899 112098431 -47501352 + L1_Mus2 LINE L1 5892 6442 -124 1 1440 228 189 0 36 chr3 112098415 112098470 -47501313 - L1_Mur3 LINE L1 -463 5417 5365 1 1440 27 81 0 0 chr3 112099445 112099507 -47500276 + AT_rich Low_complexity Low_complexity 1 62 0 1 1440 22 0 0 0 chr3 112099586 112099608 -47500175 + AT_rich Low_complexity Low_complexity 1 22 0 1 1440 32 91 0 0 chr3 112100127 112100215 -47499568 + AT_rich Low_complexity Low_complexity 1 88 0 1 1440 24 32 0 0 chr3 112100461 112100492 -47499291 + AT_rich Low_complexity Low_complexity 1 31 0 1 1440 186 43 0 0 chr3 112101206 112101229 -47498554 + (TA)n Simple_repeat Simple_repeat 2 24 0 1 1440 243 354 22 17 chr3 112101586 112101764 -47498019 + L1M3 LINE L1 5637 5815 -353 1 1440 299 226 21 11 chr3 112102409 112102503 -47497280 + Lx9 LINE L1 7542 7636 -8 1 1440 3041 133 84 2 chr3 112103300 112103821 -47495962 + Lx LINE L1 6091 6654 0 1 1440 24 0 0 0 chr3 112103916 112103940 -47495843 + AT_rich Low_complexity Low_complexity 1 24 0 1 1440 367 401 45 0 chr3 112103961 112104093 -47495690 - RSINE1 SINE B4 -25 140 3 1 1440 25 0 0 0 chr3 112104619 112104644 -47495139 + AT_rich Low_complexity Low_complexity 1 25 0 1 1440 517 211 65 42 chr3 112104991 112105186 -47494597 - Lx3B LINE L1 -5 7004 6789 1 1440 21 0 0 0 chr3 112105232 112105253 -47494530 + AT_rich Low_complexity Low_complexity 1 21 0 1 1440 1083 361 184 11 chr3 112106152 112107089 -47492694 + MTEb-int LTR MaLR 482 1580 0 1 1440 453 348 147 58 chr3 112107089 112107437 -47492346 + MTEb LTR MaLR 1 379 0 1 1440 411 21 0 0 chr3 112107618 112107666 -47492117 + (TA)n Simple_repeat Simple_repeat 2 49 0 1 1440 22 56 0 0 chr3 112107734 112107770 -47492013 + AT_rich Low_complexity Low_complexity 1 36 0 1 1440 375 289 0 0 chr3 112108538 112108621 -47491162 + B3 SINE B2 77 159 -57 1 1440 1859 164 60 19 chr3 112110513 112110880 -47488903 - Lx3B LINE L1 0 6973 6592 1 1440 28 29 0 0 chr3 112111984 112112019 -47487764 + AT_rich Low_complexity Low_complexity 1 35 0 1 1440 396 360 0 14 chr3 112112478 112112616 -47487167 - MLT1A0 LTR MaLR -224 141 6 1 1440 546 197 0 159 chr3 112113509 112113613 -47486170 + RLTR23 LTR ERV1 8 104 -326 1 1440 261 0 0 0 chr3 112113613 112113642 -47486141 + (CA)n Simple_repeat Simple_repeat 2 30 0 1 1440 546 197 0 159 chr3 112113642 112113694 -47486089 + RLTR23 LTR ERV1 105 139 -291 1 1440 711 309 81 62 chr3 112113716 112114037 -47485746 + RLTR23 LTR ERV1 104 430 0 1 1440 26 50 0 0 chr3 112115392 112115432 -47484351 + AT_rich Low_complexity Low_complexity 1 40 0 1 1440 6968 137 5 1 chr3 112115482 112116539 -47483244 - Lx LINE L1 -5 6649 5589 1 1440 224 333 0 0 chr3 112116567 112116615 -47483168 - ID4_ SINE ID -33 50 3 1 1440 344 233 32 43 chr3 112116667 112116761 -47483022 + Lx6 LINE L1 6803 6895 -565 1 1440 296 45 0 43 chr3 112116763 112116810 -47482973 + (CAGAGA)n Simple_repeat Simple_repeat 2 46 0 1 1440 1041 278 35 35 chr3 112116816 112117126 -47482657 + Lx6 LINE L1 6839 7148 -312 1 1440 505 211 0 0 chr3 112117126 112117221 -47482562 + RMER6D LTR ERVK 1 95 -625 1 1440 606 63 0 0 chr3 112117227 112117306 -47482477 + (TG)n Simple_repeat Simple_repeat 1 79 0 1 1440 1765 185 12 27 chr3 112117307 112117645 -47482138 + RMER6D LTR ERVK 384 716 -4 1 1440 327 104 0 0 chr3 112117986 112118034 -47481749 + (TA)n Simple_repeat Simple_repeat 2 49 0 1 1440 282 143 0 0 chr3 112118195 112118258 -47481525 + (T)n Simple_repeat Simple_repeat 1 63 0 1 1440 38366 47 13 7 chr3 112118294 112124575 -47475208 - L1Md_A LINE L1 0 6582 263 1 1440 30 0 0 0 chr3 112124691 112124721 -47475062 + AT_rich Low_complexity Low_complexity 1 30 0 1 1440 558 204 180 0 chr3 112125214 112125425 -47474358 + Lx9 LINE L1 7388 7636 -8 1 1440 659 168 86 6 chr3 112125962 112126124 -47473659 - Lx2A1 LINE L1 -7 7001 6827 1 1440 205 220 43 52 chr3 112126704 112126819 -47472964 + (TTTG)n Simple_repeat Simple_repeat 3 116 0 1 1440 44 46 0 0 chr3 112126885 112126950 -47472833 + AT_rich Low_complexity Low_complexity 1 65 0 1 1440 473 304 22 33 chr3 112127595 112127775 -47472008 + B3A SINE B2 5 182 -16 1 1440 25 0 0 0 chr3 112128840 112128865 -47470918 + AT_rich Low_complexity Low_complexity 1 25 0 1 1440 1778 173 9 60 chr3 112128933 112129144 -47470639 + RMER17C LTR ERVK 2 193 -217 1 1440 288 0 0 0 chr3 112129144 112129176 -47470607 + (TC)n Simple_repeat Simple_repeat 2 33 0 1 1440 1778 173 9 60 chr3 112129176 112129395 -47470388 + RMER17C LTR ERVK 194 410 0 1 1440 261 0 0 0 chr3 112130233 112130262 -47469521 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 1 1440 3269 244 63 36 chr3 112130282 112131231 -47468552 - Lx7 LINE L1 -90 7606 6632 1 1440 32 57 0 0 chr3 112131858 112131911 -47467872 + AT_rich Low_complexity Low_complexity 1 53 0 1 1440 2765 100 7 15 chr3 112131957 112132364 -47467419 - L1_Mus3 LINE L1 -5 6633 6230 1 1440 261 119 0 0 chr3 112132728 112132770 -47467013 + (TTG)n Simple_repeat Simple_repeat 2 43 0 1 1440 395 229 96 24 chr3 112132770 112132895 -47466888 - Lx7 LINE L1 -1012 6684 6551 1 1440 1739 162 13 116 chr3 112133111 112133508 -47466275 - ORR1B1 LTR MaLR 0 394 39 1 1440 41113 5 0 0 chr3 112134784 112141151 -47458632 - L1Md_A LINE L1 0 6582 214 1 1440 3403 157 24 33 chr3 112142221 112142853 -47456930 - Lx LINE L1 -1 6653 6028 1 1440 3028 132 59 13 chr3 112142855 112143331 -47456452 - L1VL4 LINE L1 -5599 703 206 1 1440 28 0 0 0 chr3 112144135 112144163 -47455620 + AT_rich Low_complexity Low_complexity 1 28 0 1 1440 416 316 109 55 chr3 112144474 112144675 -47455108 + B3 SINE B2 2 213 -3 1 1440 216 204 0 20 chr3 112145747 112145797 -47453986 + (CAAA)n Simple_repeat Simple_repeat 2 50 0 2 1440 357 217 46 46 chr3 112145805 112145892 -47453891 + B1_Mur3 SINE Alu 57 143 -6 2 1440 505 73 12 24 chr3 112145896 112145980 -47453803 + (TAGA)n Simple_repeat Simple_repeat 4 86 0 2 1440 36 23 0 0 chr3 112145982 112146025 -47453758 + AT_rich Low_complexity Low_complexity 1 43 0 2 1440 4775 116 20 0 chr3 112146025 112146731 -47453052 + Lx3A LINE L1 6255 6974 -7 2 1440 483 18 0 0 chr3 112146734 112146790 -47452993 + (TAGA)n Simple_repeat Simple_repeat 1 56 0 2 1440 249 333 87 10 chr3 112146815 112146918 -47452865 + RSINE1 SINE B4 15 125 -40 2 1440 2057 280 62 26 chr3 112146920 112147583 -47452200 + Lx6 LINE L1 6773 7459 -1 2 1440 24 32 0 0 chr3 112147691 112147722 -47452061 + AT_rich Low_complexity Low_complexity 1 31 0 2 1440 1255 175 96 78 chr3 112147733 112147802 -47451981 - Lx3B LINE L1 -6 6967 6897 2 1440 377 54 18 0 chr3 112147802 112147858 -47451925 + (CA)n Simple_repeat Simple_repeat 2 58 0 2 1440 1255 158 111 61 chr3 112147858 112148166 -47451617 - Lx3B LINE L1 -77 6896 6494 2 1440 31 68 0 0 chr3 112149188 112149247 -47450536 + AT_rich Low_complexity Low_complexity 1 59 0 2 1440 24 53 0 0 chr3 112149446 112149484 -47450299 + AT_rich Low_complexity Low_complexity 1 38 0 2 1440 342 0 0 0 chr3 112150205 112150243 -47449540 + (TC)n Simple_repeat Simple_repeat 1 38 0 2 1440 543 16 0 0 chr3 112150243 112150306 -47449477 + (CA)n Simple_repeat Simple_repeat 1 64 0 2 1440 22 0 0 0 chr3 112151811 112151833 -47447950 + AT_rich Low_complexity Low_complexity 1 22 0 2 1440 332 362 33 0 chr3 112151871 112152023 -47447760 + Lx6 LINE L1 7278 7434 -26 2 1440 328 256 278 0 chr3 112152761 112152862 -47446921 - Lx9 LINE L1 -36 7608 7503 2 1440 671 33 11 0 chr3 112152862 112152952 -47446831 + (CA)n Simple_repeat Simple_repeat 2 92 0 2 1440 328 256 278 0 chr3 112152952 112153041 -47446742 - Lx9 LINE L1 -142 7502 7366 2 1440 636 309 99 35 chr3 112153964 112154253 -47445530 - L1MA7 LINE L1 -379 5912 5596 2 1440 303 85 0 0 chr3 112154253 112154300 -47445483 + (ATTG)n Simple_repeat Simple_repeat 2 48 0 2 1440 636 309 99 35 chr3 112154300 112154526 -47445257 - L1MA7 LINE L1 -696 5595 5364 2 1440 370 242 22 0 chr3 112154535 112154626 -47445157 - Lx6 LINE L1 -12 7448 7356 2 1440 1306 254 93 29 chr3 112154639 112155206 -47444577 - Lx6 LINE L1 -233 7227 6349 2 1440 681 13 0 0 chr3 112155210 112155288 -47444495 + (TTTC)n Simple_repeat Simple_repeat 4 81 0 2 1440 285 29 0 0 chr3 112155318 112155352 -47444431 + (TA)n Simple_repeat Simple_repeat 1 34 0 2 1440 213 65 0 0 chr3 112155370 112155401 -47444382 + (CA)n Simple_repeat Simple_repeat 2 32 0 2 1440 245 313 101 37 chr3 112155430 112155619 -47444164 - L1M3 LINE L1 -608 5683 5483 2 1440 309 307 81 27 chr3 112155836 112156097 -47443686 - L1M3 LINE L1 -909 5231 4957 2 1440 293 213 36 27 chr3 112156564 112156675 -47443108 + Lx9 LINE L1 7533 7644 0 2 1440 180 0 0 0 chr3 112156835 112156855 -47442928 + (TG)n Simple_repeat Simple_repeat 2 21 0 2 1440 329 235 59 0 chr3 112157026 112157128 -47442655 + Lx9 LINE L1 7536 7643 -1 2 1440 4915 69 5 0 chr3 112158005 112158642 -47441141 - L1Md_F2 LINE L1 -12 6570 5931 2 1440 1144 68 7 0 chr3 112159789 112159935 -47439848 + B1_Mus1 SINE Alu 1 147 -1 2 1440 483 281 23 0 chr3 112159961 112160089 -47439694 + B1F2 SINE Alu 4 134 -15 2 1440 462 143 0 0 chr3 112160103 112160180 -47439603 + (TAA)n Simple_repeat Simple_repeat 2 78 0 2 1440 7281 150 56 14 chr3 112160210 112160810 -47438973 - Lx2 LINE L1 0 6997 6333 2 1440 2988 23 3 0 chr3 112160810 112161155 -47438628 + ORR1A0 LTR MaLR 1 346 0 2 1440 7281 162 42 21 chr3 112161155 112162529 -47437254 - Lx2 LINE L1 -665 6332 4970 2 1440 414 232 0 0 chr3 112162635 112162747 -47437036 + T-rich Low_complexity Low_complexity 1 112 0 2 1440 4074 144 114 19 chr3 112162754 112163024 -47436759 + Lx3A LINE L1 6166 6436 -545 2 1440 8385 23 0 0 chr3 112163024 112163993 -47435790 + L1Md_A LINE L1 5613 6581 -1 2 1440 4074 144 114 19 chr3 112163993 112164456 -47435327 + Lx3A LINE L1 6437 6969 -12 2 1440 243 0 0 0 chr3 112164456 112164483 -47435300 + (TTAA)n Simple_repeat Simple_repeat 4 30 0 2 1440 186 71 0 0 chr3 112164528 112164556 -47435227 + (T)n Simple_repeat Simple_repeat 1 28 0 2 1440 600 14 0 0 chr3 112165392 112165461 -47434322 + (TC)n Simple_repeat Simple_repeat 2 70 0 2 1440 444 37 0 0 chr3 112165465 112165519 -47434264 + (TA)n Simple_repeat Simple_repeat 2 55 0 2 1440 23 0 0 0 chr3 112166726 112166749 -47433034 + AT_rich Low_complexity Low_complexity 1 23 0 2 1440 489 291 6 62 chr3 112168325 112168423 -47431360 - Lx9 LINE L1 -251 7393 7296 2 1440 1758 48 0 13 chr3 112168423 112168656 -47431127 + L1Md_F2 LINE L1 6352 6581 -1 2 1440 489 291 6 62 chr3 112168656 112168718 -47431065 - Lx9 LINE L1 -349 7295 7242 2 1440 180 152 0 0 chr3 112168878 112168911 -47430872 + A-rich Low_complexity Low_complexity 5 37 0 2 1440 635 226 72 7 chr3 112168995 112169133 -47430650 + B1_Mm SINE Alu 1 147 0 2 1440 34 42 0 0 chr3 112169436 112169484 -47430299 + AT_rich Low_complexity Low_complexity 1 48 0 2 1440 4185 169 1 0 chr3 112169484 112170196 -47429587 - L1_Mm LINE L1 -299 5584 4872 2 1440 2956 136 30 6 chr3 112170195 112170484 -47429299 + L1_Mur1 LINE L1 4343 4632 -1254 2 1440 391 0 56 0 chr3 112170484 112170538 -47429245 + (CAAAA)n Simple_repeat Simple_repeat 4 60 0 2 1440 2956 136 30 6 chr3 112170538 112170743 -47429040 + L1_Mur1 LINE L1 4633 4849 -1037 2 1440 272 125 0 15 chr3 112170746 112170811 -47428972 + (TTTG)n Simple_repeat Simple_repeat 2 65 0 2 1440 1062 108 0 13 chr3 112170815 112170965 -47428818 - B1_Mus1 SINE Alu 0 148 1 2 1440 306 249 237 47 chr3 112170965 112171176 -47428607 + Lx8 LINE L1 7222 7472 -1 2 1440 338 350 51 0 chr3 112172397 112172554 -47427229 + Lx8 LINE L1 7086 7250 -223 2 1440 3110 249 43 12 chr3 112172712 112173536 -47426247 + Lx2B LINE L1 6007 6930 -120 2 1440 2824 190 48 13 chr3 112173531 112174155 -47425628 + Lx2B LINE L1 5846 6488 -512 2 1440 29 78 0 0 chr3 112174352 112174416 -47425367 + AT_rich Low_complexity Low_complexity 1 64 0 2 1440 227 179 0 35 chr3 112174503 112174561 -47425222 + (TATATG)n Simple_repeat Simple_repeat 2 57 0 2 1440 435 19 0 0 chr3 112175382 112175434 -47424349 + (CA)n Simple_repeat Simple_repeat 2 53 0 2 1440 191 78 78 0 chr3 112176187 112176238 -47423545 + (TA)n Simple_repeat Simple_repeat 1 55 0 2 1440 407 245 172 55 chr3 112176606 112176814 -47422969 + RLTR11B LTR ERVK 1 234 -219 2 1440 1277 73 6 0 chr3 112176814 112176992 -47422791 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 2 1440 407 245 172 55 chr3 112176992 112177038 -47422745 + RLTR11B LTR ERVK 235 285 -168 2 1440 4832 49 3 2 chr3 112177038 112177649 -47422134 + L1Md_F2 LINE L1 4975 5586 -297 2 1440 8019 50 2 0 chr3 112177649 112178642 -47421141 + L1Md_F2 LINE L1 5587 6581 -1 2 1440 509 0 16 0 chr3 112178648 112178709 -47421074 + (TG)n Simple_repeat Simple_repeat 2 63 0 2 1440 30 0 0 0 chr3 112178713 112178743 -47421040 + AT_rich Low_complexity Low_complexity 1 30 0 2 1440 2589 157 29 19 chr3 112178750 112179251 -47420532 - Lx2A1 LINE L1 -28 6980 6185 2 1440 233 324 2 27 chr3 112179251 112179339 -47420444 + RLTR20A2 LTR ERVK 482 568 0 2 1440 24 53 0 0 chr3 112180938 112180976 -47418807 + AT_rich Low_complexity Low_complexity 1 38 0 2 1440 678 172 0 0 chr3 112181177 112181305 -47418478 + (TA)n Simple_repeat Simple_repeat 1 128 0 2 1440 30 0 0 0 chr3 112182394 112182424 -47417359 + AT_rich Low_complexity Low_complexity 1 30 0 2 1440 356 353 91 56 chr3 112183191 112183443 -47416340 - MTEb LTR MaLR -66 313 53 2 1440 3315 67 54 0 chr3 112183650 112184111 -47415672 - L1_Mus2 LINE L1 -449 6117 5632 2 1440 3254 81 2 2 chr3 112184112 112184558 -47415225 + L1_Mus2 LINE L1 6119 6564 -2 2 1440 21 0 0 0 chr3 112185332 112185353 -47414430 + AT_rich Low_complexity Low_complexity 1 21 0 2 1440 1528 287 77 56 chr3 112185465 112186059 -47413724 - RLTR18 LTR ERVK -9 607 1 2 1440 279 211 39 13 chr3 112186326 112186403 -47413380 - L1M LINE L1 -889 5402 5324 2 1440 4051 133 40 86 chr3 112186630 112186909 -47412874 - Lx2A LINE L1 -387 6621 6342 2 1440 972 101 7 0 chr3 112186909 112187047 -47412736 + B1_Mus1 SINE Alu 1 139 -9 2 1440 4051 133 40 86 chr3 112187047 112187557 -47412226 - Lx2A LINE L1 -667 6341 5868 2 1440 2206 133 19 5 chr3 112187559 112187929 -47411854 + Lx2A LINE L1 6634 7008 0 2 1440 433 189 12 0 chr3 112187962 112188126 -47411657 + CT-rich Low_complexity Low_complexity 1 166 0 2 1440 278 169 61 15 chr3 112188133 112188199 -47411584 + (TCTCTG)n Simple_repeat Simple_repeat 2 70 0 2 1440 188 182 0 22 chr3 112189122 112189167 -47410616 + (TA)n Simple_repeat Simple_repeat 2 45 0 2 1440 1073 283 79 68 chr3 112189911 112190369 -47409414 - MT2A LTR ERVL 0 533 71 2 1440 215 397 16 8 chr3 112190435 112190562 -47409221 - B1F SINE Alu -21 128 1 2 1440 300 302 67 26 chr3 112190817 112191002 -47408781 + RLTR19C LTR ERVK 370 714 -1 2 1440 1073 219 38 21 chr3 112191012 112191250 -47408533 - RMER6C LTR ERVK -448 242 1 2 1440 1277 193 82 16 chr3 112191300 112191341 -47408442 - Lx3_Mus LINE L1 -1086 5923 5876 2 1440 3165 161 68 8 chr3 112191341 112191931 -47407852 - Lx2B LINE L1 -4 6996 6372 2 1440 3287 176 60 8 chr3 112191931 112192602 -47407181 - Lx3_Mus LINE L1 -9 5877 5173 2 1440 7019 148 14 45 chr3 112192599 112193912 -47405871 + Lx3_Mus LINE L1 3850 5121 -765 2 1440 458 170 11 0 chr3 112193906 112194000 -47405783 - Lx LINE L1 -250 6404 6310 2 1440 557 165 8 0 chr3 112194000 112194121 -47405662 + Lx LINE L1 6532 6653 -1 2 1440 665 115 0 0 chr3 112194121 112194217 -47405566 + L1_Mur1 LINE L1 5103 5198 -688 2 1440 534 264 99 33 chr3 112194480 112194723 -47405060 + Lx8 LINE L1 6903 7161 -312 2 1440 330 216 23 0 chr3 112194839 112194927 -47404856 - Lx3A LINE L1 -3 6978 6889 2 1440 474 211 50 50 chr3 112194927 112195047 -47404736 + L1_Mur1 LINE L1 69 188 -6794 2 1440 40 37 0 0 chr3 112195371 112195425 -47404358 + AT_rich Low_complexity Low_complexity 1 54 0 2 1440 24 0 0 0 chr3 112196024 112196048 -47403735 + AT_rich Low_complexity Low_complexity 1 24 0 2 1440 31 68 0 0 chr3 112196104 112196163 -47403620 + AT_rich Low_complexity Low_complexity 1 59 0 2 1440 36 40 0 0 chr3 112196577 112196627 -47403156 + AT_rich Low_complexity Low_complexity 1 50 0 2 1440 267 79 0 0 chr3 112196677 112196715 -47403068 + (TA)n Simple_repeat Simple_repeat 2 39 0 2 1441 30 83 0 0 chr3 112198889 112198961 -47400822 + AT_rich Low_complexity Low_complexity 1 72 0 2 1441 4710 203 72 9 chr3 112199567 112200579 -47399204 - Lx2B LINE L1 -1 6999 5924 2 1441 3813 157 78 14 chr3 112200580 112201348 -47398435 + Lx3B LINE L1 5081 5912 -1061 2 1441 434 300 38 106 chr3 112201540 112201754 -47398029 - MTE2a LTR MaLR -76 303 101 3 1441 589 199 5 17 chr3 112201755 112201896 -47397887 - ORR1D1 LTR MaLR 0 374 233 3 1441 1251 262 48 41 chr3 112201908 112202326 -47397457 - ORR1D1-int LTR MaLR -726 644 224 3 1441 517 197 94 44 chr3 112202672 112202831 -47396952 - Lx5 LINE L1 -5 7045 6879 3 1441 5839 127 16 24 chr3 112203052 112204136 -47395647 - L1VL4 LINE L1 -2317 1242 161 3 1441 239 0 0 31 chr3 112204136 112204168 -47395615 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 3 1441 943 111 44 0 chr3 112204171 112204306 -47395477 - B1_Mm SINE Alu -6 141 1 3 1441 5839 147 12 34 chr3 112204306 112204475 -47395308 - L1VL4 LINE L1 -6142 160 1 3 1441 357 330 27 16 chr3 112204577 112204762 -47395021 - ERVL-B4-int LTR ERVL -3174 2540 2354 3 1441 22 56 0 0 chr3 112205038 112205074 -47394709 + AT_rich Low_complexity Low_complexity 1 36 0 3 1441 3837 216 109 9 chr3 112205620 112206675 -47393108 - L1_Mur3 LINE L1 -765 5115 3956 3 1441 189 0 0 0 chr3 112206679 112206700 -47393083 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 3 1441 18674 87 11 6 chr3 112206718 112208314 -47391469 - L1Md_F2 LINE L1 -12 6570 4965 3 1441 1399 46 0 11 chr3 112208314 112208491 -47391292 - B2_Mm1a SINE B2 -17 176 2 3 1441 18674 97 3 8 chr3 112208491 112210266 -47389517 - L1Md_F2 LINE L1 -919 4964 3203 3 1441 7373 71 1 1 chr3 112210264 112211241 -47388542 + L1_Mm LINE L1 4433 5409 -474 3 1441 1884 174 18 40 chr3 112211259 112211674 -47388109 - L1VL1 LINE L1 -6006 416 2 3 1441 275 227 0 0 chr3 112211677 112211743 -47388040 - L1_Mur3 LINE L1 -1905 3975 3910 3 1441 2825 246 23 20 chr3 112211752 112212496 -47387287 + L1_Mur3 LINE L1 5126 5871 -9 3 1441 21 36 0 0 chr3 112212630 112212658 -47387125 + AT_rich Low_complexity Low_complexity 1 28 0 3 1441 578 26 13 0 chr3 112212744 112212820 -47386963 + (TAGA)n Simple_repeat Simple_repeat 1 77 0 3 1441 241 333 45 15 chr3 112213309 112213443 -47386340 - Lx7 LINE L1 0 7696 7559 3 1441 421 280 64 32 chr3 112213585 112213773 -47386010 - Lx7 LINE L1 -358 7338 7145 3 1441 7182 186 27 82 chr3 112213785 112214170 -47385613 - RLTR21 LTR ERVK -8 1564 1190 3 1441 213 39 0 0 chr3 112214170 112214196 -47385587 + (CAGA)n Simple_repeat Simple_repeat 1 26 0 3 1441 7182 186 27 82 chr3 112214196 112214339 -47385444 - RLTR21 LTR ERVK -383 1189 1082 3 1441 441 54 0 0 chr3 112214339 112214395 -47385388 + (TA)n Simple_repeat Simple_repeat 1 56 0 3 1441 7182 186 27 82 chr3 112214395 112214439 -47385344 - RLTR21 LTR ERVK -491 1081 1055 3 1441 339 130 0 0 chr3 112214439 112214493 -47385290 + (CATA)n Simple_repeat Simple_repeat 1 54 0 3 1441 7182 186 27 82 chr3 112214493 112215572 -47384211 - RLTR21 LTR ERVK -518 1054 2 3 1441 810 284 38 31 chr3 112215585 112215876 -47383907 - Lx7 LINE L1 -564 7132 6840 3 1441 260 289 143 86 chr3 112215919 112216059 -47383724 - ORR1E LTR MaLR -207 152 5 3 1441 731 226 30 0 chr3 112216059 112216223 -47383560 + Lx7 LINE L1 6653 6821 -875 3 1441 401 294 108 10 chr3 112216230 112216433 -47383350 - Lx7 LINE L1 -1288 6408 6186 3 1441 461 248 57 0 chr3 112216571 112216676 -47383107 - MTEa LTR MaLR -15 364 254 3 1441 1185 120 22 0 chr3 112216676 112216860 -47382923 + B2_Mm2 SINE B2 1 188 -7 3 1441 3688 73 2 0 chr3 112217399 112217876 -47381907 - L1_Mus1 LINE L1 -128 6439 5962 3 1441 1102 73 33 0 chr3 112217876 112218026 -47381757 + L1_Mus1 LINE L1 6413 6567 0 3 1441 929 297 93 27 chr3 112219270 112219637 -47380146 + Lx6 LINE L1 6598 6988 -472 3 1441 2454 189 22 11 chr3 112219887 112220337 -47379446 - Lx4A LINE L1 0 7058 6604 3 1441 26 30 0 0 chr3 112220526 112220559 -47379224 + AT_rich Low_complexity Low_complexity 1 33 0 3 1441 203 238 0 0 chr3 112220570 112220612 -47379171 + C-rich Low_complexity Low_complexity 4 45 0 3 1441 248 122 0 39 chr3 112220614 112220665 -47379118 + Lx7 LINE L1 7647 7695 -1 3 1441 26 0 0 0 chr3 112220665 112220691 -47379092 + AT_rich Low_complexity Low_complexity 1 26 0 3 1441 1554 241 131 19 chr3 112221593 112222094 -47377689 - RMER19C LTR ERVK 0 611 64 3 1441 192 77 0 0 chr3 112222342 112222368 -47377415 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 3 1441 234 0 0 0 chr3 112222368 112222393 -47377390 + (ATTG)n Simple_repeat Simple_repeat 3 28 0 3 1441 25 31 0 0 chr3 112222511 112222543 -47377240 + AT_rich Low_complexity Low_complexity 1 32 0 3 1441 445 279 16 11 chr3 112222559 112222715 -47377068 - L1_Mur1 LINE L1 -544 5630 5465 3 1441 571 271 94 55 chr3 112222724 112223022 -47376761 + MTD LTR MaLR 4 311 -110 3 1441 269 135 0 0 chr3 112223146 112223183 -47376600 + Lx4A LINE L1 6825 6861 -197 3 1441 1322 70 10 15 chr3 112223477 112223680 -47376103 + L1_Mus3 LINE L1 6435 6636 -2 3 1441 217 0 29 29 chr3 112224008 112224042 -47375741 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 3 1441 5896 110 10 29 chr3 112224056 112224304 -47375479 - Lx3A LINE L1 -3 6978 6735 3 1441 2254 133 60 5 chr3 112224304 112224690 -47375093 - RLTR9E LTR ERVK -2 407 1 3 1441 5896 110 10 29 chr3 112224690 112225412 -47374371 - Lx3A LINE L1 -247 6734 6026 3 1441 33 85 0 0 chr3 112225542 112225624 -47374159 + AT_rich Low_complexity Low_complexity 1 82 0 3 1441 215 282 25 13 chr3 112226294 112226373 -47373410 + GA-rich Low_complexity Low_complexity 1 80 0 3 1441 493 364 10 5 chr3 112226945 112227141 -47372642 + Tigger5 DNA MER2_type 46 242 -2164 3 1441 248 208 83 0 chr3 112227120 112227192 -47372591 + Tigger5 DNA MER2_type 2268 2345 -61 3 1441 5938 37 2 1 chr3 112228037 112228767 -47371016 - L1Md_F2 LINE L1 -739 5432 4672 3 1441 1857 33 0 0 chr3 112228765 112228980 -47370803 + L1Md_F2 LINE L1 5372 5586 -297 3 1441 7975 52 2 1 chr3 112228981 112229974 -47369809 + L1Md_F2 LINE L1 5588 6581 -1 3 1441 282 160 0 0 chr3 112230658 112230708 -47369075 + (TG)n Simple_repeat Simple_repeat 1 50 0 3 1441 257 0 30 0 chr3 112231113 112231146 -47368637 + (TAAA)n Simple_repeat Simple_repeat 1 34 0 3 1441 1742 92 0 0 chr3 112231883 112232122 -47367661 + Lx LINE L1 5650 5888 -766 3 1441 2276 163 27 5 chr3 112232124 112232538 -47367245 + Lx LINE L1 6226 6648 -6 3 1441 265 248 28 47 chr3 112232700 112232806 -47366977 + L1MEc LINE L1 109 212 -6188 3 1441 756 125 75 0 chr3 112233077 112233197 -47366586 - L1_Mus4 LINE L1 -246 6408 6280 3 1441 4289 149 28 0 chr3 112233211 112234158 -47365625 - L1_Mus4 LINE L1 -626 6010 5040 3 1441 542 168 293 38 chr3 112234159 112234396 -47365387 + RLTR9E LTR ERVK 1 287 -116 3 1441 5208 129 1 13 chr3 112234396 112235180 -47364603 + ETnERV2-int LTR ERVK 881 1655 -1659 3 1441 21416 177 35 27 chr3 112235416 112240011 -47359772 + ETnERV2-int LTR ERVK 1791 7206 -200 3 1441 673 217 262 10 chr3 112240011 112240313 -47359470 + RLTR13D6 LTR ERVK 154 531 -371 3 1441 807 216 185 53 chr3 112240316 112240673 -47359110 + RLTR9E LTR ERVK 6 409 0 3 1441 2628 179 12 10 chr3 112240694 112241201 -47358582 - L1_Mus4 LINE L1 -858 5025 4518 3 1441 232 185 74 0 chr3 112241345 112241399 -47358384 - Lx9 LINE L1 -193 7451 7394 3 1441 1771 142 32 59 chr3 112242341 112242679 -47357104 + ORR1A4 LTR MaLR 1 329 0 3 1441 21 0 0 0 chr3 112242704 112242725 -47357058 + AT_rich Low_complexity Low_complexity 1 21 0 3 1441 31233 101 20 9 chr3 112243566 112249719 -47350064 - L1Md_F2 LINE L1 -8 6574 380 3 1441 276 149 64 0 chr3 112249843 112249937 -47349846 + (TAGA)n Simple_repeat Simple_repeat 1 100 0 3 1441 1029 106 0 0 chr3 112250686 112250837 -47348946 - L1_Mus2 LINE L1 -1 6565 6415 3 1441 644 36 12 0 chr3 112251153 112251236 -47348547 + (TTTCC)n Simple_repeat Simple_repeat 1 84 0 3 1441 746 121 16 0 chr3 112251237 112251361 -47348422 + (TTCC)n Simple_repeat Simple_repeat 3 128 0 3 1441 279 0 0 0 chr3 112251362 112251393 -47348390 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 3 1441 1125 65 0 0 chr3 112251393 112251532 -47348251 - B1_Mus1 SINE Alu -9 139 1 3 1441 378 0 0 0 chr3 112252019 112252061 -47347722 + (TA)n Simple_repeat Simple_repeat 2 43 0 3 1441 387 0 0 0 chr3 112252061 112252103 -47347680 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 1441 187 69 49 49 chr3 112253286 112253347 -47346436 + T-rich Low_complexity Low_complexity 4 64 0 3 1441 4219 179 14 27 chr3 112253398 112254296 -47345487 + ORR1A3-int LTR MaLR 716 1532 -431 3 1441 662 279 126 64 chr3 112254296 112254747 -47345036 + MuRRS4-int LTR ERV1 2216 2501 -2562 3 1441 354 336 89 16 chr3 112254841 112255098 -47344685 + MuRRS4-int LTR ERV1 4271 4546 -3232 3 1441 186 43 0 0 chr3 112255205 112255228 -47344555 + (GAAAA)n Simple_repeat Simple_repeat 2 24 0 3 1441 411 336 0 0 chr3 112255327 112255470 -47344313 + C-rich Low_complexity Low_complexity 1 143 0 3 1441 261 118 57 29 chr3 112255474 112255579 -47344204 + (TCTA)n Simple_repeat Simple_repeat 1 108 0 3 1441 914 294 0 15 chr3 112255684 112255943 -47343840 + MuRRS4-int LTR ERV1 3532 3786 -1277 3 1441 334 206 0 0 chr3 112255943 112256006 -47343777 - L1_Mus2 LINE L1 -399 6167 6105 3 1441 18238 140 11 38 chr3 112256003 112258472 -47341311 - L1_Mm LINE L1 -1360 4523 2146 3 1441 207 0 0 0 chr3 112258472 112258495 -47341288 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 3 1441 18238 140 11 38 chr3 112258495 112259426 -47340357 - L1_Mm LINE L1 -3738 2145 1214 3 1441 490 265 16 57 chr3 112259669 112259861 -47339922 - Lx4B LINE L1 -4 7054 6871 3 1441 4260 194 5 6 chr3 112259861 112260694 -47339089 + L1_Mur2 LINE L1 5030 5861 -16 3 1441 1901 111 52 3 chr3 112261527 112261835 -47337948 + Lx3_Mus LINE L1 6687 7009 0 3 1441 9388 170 39 22 chr3 112262091 112263595 -47336188 + L1_Mur2 LINE L1 512 2049 -3828 3 1441 513 32 0 0 chr3 112263595 112263658 -47336125 + (CA)n Simple_repeat Simple_repeat 1 63 0 3 1441 9388 148 63 10 chr3 112263658 112264693 -47335090 + L1_Mur2 LINE L1 2050 3127 -2750 3 1441 3332 181 33 8 chr3 112264685 112265320 -47334463 + Lx4A LINE L1 5689 6339 -719 3 1441 2569 255 36 32 chr3 112265321 112265747 -47334036 + Lx5 LINE L1 5704 6118 -932 3 1441 897 44 0 0 chr3 112265747 112265861 -47333922 + (GAA)n Simple_repeat Simple_repeat 3 116 0 3 1441 825 56 0 0 chr3 112265866 112265973 -47333810 + (GGAGA)n Simple_repeat Simple_repeat 2 108 0 3 1441 2569 273 54 21 chr3 112265973 112266544 -47333239 + Lx5 LINE L1 6123 6880 -580 3 1441 768 68 0 0 chr3 112266544 112266647 -47333136 + (GAAAA)n Simple_repeat Simple_repeat 3 105 0 3 1441 689 363 90 19 chr3 112266647 112266857 -47332926 + Lx5 LINE L1 6637 6860 -190 3 1441 26 0 0 0 chr3 112266880 112266906 -47332877 + AT_rich Low_complexity Low_complexity 1 26 0 3 1441 315 0 0 0 chr3 112267298 112267333 -47332450 + (TA)n Simple_repeat Simple_repeat 2 36 0 3 1441 6446 34 1 0 chr3 112267335 112268093 -47331690 - L1Md_F3 LINE L1 -22 6562 5804 3 1441 251 102 58 58 chr3 112268421 112268473 -47331310 + L1_Mur1 LINE L1 672 723 -6259 3 1441 2739 144 6 47 chr3 112268486 112268719 -47331064 + Lx3B LINE L1 6502 6735 -238 3 1441 1933 133 120 45 chr3 112268719 112269161 -47330622 - IAPLTR2_Mm LTR ERVK 0 475 1 3 1441 2739 144 6 47 chr3 112269161 112269416 -47330367 + Lx3B LINE L1 6736 6970 -3 3 1441 28 29 0 0 chr3 112269552 112269587 -47330196 + AT_rich Low_complexity Low_complexity 1 35 0 3 1441 235 196 257 40 chr3 112269642 112269743 -47330040 - RSINE1 SINE B4 -39 126 4 3 1441 3414 35 0 0 chr3 112270443 112270839 -47328944 + MTA_Mm LTR MaLR 1 396 0 3 1441 2128 204 50 0 chr3 112272064 112272486 -47327297 + Lx4B LINE L1 6080 6522 -536 3 1441 932 218 39 10 chr3 112272486 112272694 -47327089 + Lx4B LINE L1 6845 7058 0 3 1441 23 0 0 0 chr3 112272917 112272940 -47326843 + AT_rich Low_complexity Low_complexity 1 23 0 3 1441 198 0 0 0 chr3 112273809 112273831 -47325952 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 4 1441 1467 178 69 27 chr3 112273837 112274344 -47325439 - RMER6A LTR ERVK -2 754 1 4 1441 37 23 0 0 chr3 112274812 112274856 -47324927 + AT_rich Low_complexity Low_complexity 1 44 0 4 1441 361 421 6 19 chr3 112275071 112275233 -47324550 - RSINE1 SINE B4 -2 163 4 4 1441 547 388 93 51 chr3 112275342 112276171 -47323612 + L1MC3 LINE L1 92 955 -5090 4 1441 522 266 77 7 chr3 112276171 112276326 -47323457 - MTE2a LTR MaLR -8 371 206 4 1441 232 273 38 25 chr3 112276400 112276479 -47323304 - MTE2a LTR MaLR -336 83 4 4 1441 332 326 34 98 chr3 112276495 112276836 -47322947 + L1MC3 LINE L1 980 1372 -5379 4 1441 4829 144 13 4 chr3 112276908 112277696 -47322087 - Lx LINE L1 0 6654 5860 4 1441 259 23 22 44 chr3 112277696 112277741 -47322042 + (TTTTTG)n Simple_repeat Simple_repeat 4 47 0 4 1441 8237 166 1 4 chr3 112277741 112279177 -47320606 - L1_Mm LINE L1 -14 5869 4439 4 1441 295 200 77 0 chr3 112279180 112279245 -47320538 + RMER6C LTR ERVK 39 108 -582 4 1441 395 191 0 160 chr3 112279247 112279314 -47320469 + MT2B LTR ERVL 209 259 -342 4 1441 389 289 9 37 chr3 112279314 112279422 -47320361 + B1_Mus2 SINE Alu 3 107 -40 4 1441 1403 153 89 66 chr3 112279413 112279763 -47320020 + RMER6C LTR ERVK 326 683 -7 4 1441 716 143 0 22 chr3 112279851 112279987 -47319796 + (TG)n Simple_repeat Simple_repeat 1 133 0 4 1441 1348 204 73 89 chr3 112280797 112281179 -47318604 + ORR1B1 LTR MaLR 19 394 0 4 1441 247 259 109 23 chr3 112281183 112281357 -47318426 + L1MC3 LINE L1 4875 5063 -1501 4 1441 347 174 0 42 chr3 112281429 112281525 -47318258 + A-rich Low_complexity Low_complexity 1 92 0 4 1441 30 83 0 0 chr3 112281764 112281836 -47317947 + AT_rich Low_complexity Low_complexity 1 72 0 4 1441 402 355 48 62 chr3 112282087 112282439 -47317344 + L1MC3 LINE L1 5369 5715 -849 4 1441 260 317 0 0 chr3 112282488 112282499 -47317284 + B4A SINE B4 82 141 -151 4 1441 272 286 0 0 chr3 112282499 112282548 -47317235 + B1F1 SINE Alu 8 56 -93 4 1441 28 0 0 0 chr3 112282593 112282621 -47317162 + AT_rich Low_complexity Low_complexity 1 28 0 4 1441 487 352 82 33 chr3 112282621 112283251 -47316532 + L1MC3 LINE L1 5776 6431 -166 4 1441 898 248 25 30 chr3 112283335 112283572 -47316211 + RMER15 LTR ERVL 340 575 0 4 1441 820 158 18 54 chr3 112283672 112283839 -47315944 + RLTR28 LTR ERVL 1 161 -363 4 1441 517 210 42 8 chr3 112283820 112283940 -47315843 + RLTR28 LTR ERVL 399 522 -2 4 1441 1893 233 37 12 chr3 112284054 112284463 -47315320 - MTC LTR MaLR -2 419 1 4 1441 258 308 31 15 chr3 112284478 112284629 -47315154 - L1_Rod LINE L1 -1175 4968 4757 4 1441 313 247 95 0 chr3 112284719 112284877 -47314906 + L1M3 LINE L1 4509 4681 -1459 4 1441 2616 77 21 0 chr3 112285270 112285609 -47314174 - ORR1A1 LTR MaLR 0 346 1 4 1441 27 29 0 0 chr3 112285636 112285670 -47314113 + AT_rich Low_complexity Low_complexity 1 34 0 4 1441 2986 132 12 4 chr3 112285749 112286218 -47313565 - Lx2A LINE L1 0 7008 6535 4 1441 1023 146 39 6 chr3 112286218 112286397 -47313386 + B2_Mm2 SINE B2 2 186 -9 4 1441 2986 132 12 4 chr3 112286397 112286412 -47313371 - Lx2A LINE L1 -474 6534 6520 4 1441 291 28 0 0 chr3 112286506 112286542 -47313241 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 4 1441 1256 345 50 40 chr3 112286564 112287380 -47312403 - Lx9 LINE L1 -474 7170 6341 4 1441 420 20 0 0 chr3 112287380 112287429 -47312354 + (CA)n Simple_repeat Simple_repeat 2 50 0 4 1441 1256 345 50 40 chr3 112287429 112287488 -47312295 - Lx9 LINE L1 -1304 6340 6287 4 1441 267 31 0 0 chr3 112287568 112287600 -47312183 + (CTAAT)n Simple_repeat Simple_repeat 2 33 0 4 1441 536 335 50 27 chr3 112287600 112288289 -47311494 - L1_Rod LINE L1 -3661 2186 1473 4 1441 3999 94 65 2 chr3 112289210 112289797 -47309986 - L1Md_F2 LINE L1 -19 6563 5940 4 1441 6479 63 0 1 chr3 112289822 112290714 -47309069 + L1Md_F2 LINE L1 5046 5935 -647 4 1441 749 88 0 0 chr3 112291034 112291136 -47308647 + Lx3A LINE L1 6505 6606 -375 4 1441 24 0 0 0 chr3 112291656 112291680 -47308103 + AT_rich Low_complexity Low_complexity 1 24 0 4 1441 310 256 160 15 chr3 112291792 112291923 -47307860 + L1MC3 LINE L1 6317 6466 -1319 4 1441 791 313 102 41 chr3 112291974 112292330 -47307453 - MTC LTR MaLR -2 377 35 4 1441 698 272 52 39 chr3 112292426 112292659 -47307124 - MTE2a LTR MaLR 0 379 144 4 1441 594 79 0 0 chr3 112292758 112292847 -47306936 + (TC)n Simple_repeat Simple_repeat 1 89 0 4 1441 1074 58 41 3 chr3 112292847 112293141 -47306642 + (CA)n Simple_repeat Simple_repeat 1 305 0 4 1441 226 293 0 0 chr3 112293247 112293305 -47306478 + L1MC3 LINE L1 6760 6817 -968 4 1441 418 266 61 23 chr3 112293840 112293971 -47305812 - B3 SINE B2 -7 209 74 4 1441 359 302 81 17 chr3 112294040 112294212 -47305571 + L1MEg LINE L1 1197 1379 -4705 4 1441 2663 161 17 13 chr3 112294233 112294699 -47305084 - Lx4A LINE L1 0 7058 6591 4 1441 2196 177 5 0 chr3 112294702 112295075 -47304708 - Lx4A LINE L1 -664 6394 6020 4 1441 33983 77 20 8 chr3 112295072 112301040 -47298743 - L1Md_F3 LINE L1 -244 6340 324 4 1441 4967 138 39 13 chr3 112301048 112301894 -47297889 - Lx4A LINE L1 0 5877 5010 4 1441 301 246 0 0 chr3 112301914 112301975 -47297808 + Lx9 LINE L1 6743 6803 -841 4 1441 195 162 0 0 chr3 112302396 112302433 -47297350 + T-rich Low_complexity Low_complexity 1 37 0 4 1441 7175 125 55 24 chr3 112302456 112303689 -47296094 - Lx3_Mus LINE L1 -7 7002 5731 4 1441 9109 101 47 4 chr3 112303688 112305103 -47294680 + L1_Mur1 LINE L1 4071 5546 -340 4 1441 253 68 45 0 chr3 112305138 112305182 -47294601 + (GGAGA)n Simple_repeat Simple_repeat 1 46 0 4 1441 23 0 0 0 chr3 112305816 112305839 -47293944 + AT_rich Low_complexity Low_complexity 1 23 0 4 1441 41 36 0 0 chr3 112306353 112306408 -47293375 + AT_rich Low_complexity Low_complexity 1 55 0 4 1441 198 0 0 0 chr3 112307100 112307122 -47292661 + (T)n Simple_repeat Simple_repeat 1 22 0 4 1441 3753 134 3 12 chr3 112307151 112307740 -47292043 + MT2B2 LTR ERVL 1 584 0 4 1441 543 349 105 21 chr3 112307935 112308354 -47291429 - MLT1C LTR MaLR -13 454 1 4 1441 31 0 0 0 chr3 112308727 112308758 -47291025 + AT_rich Low_complexity Low_complexity 1 31 0 4 1441 24 0 0 0 chr3 112309062 112309086 -47290697 + AT_rich Low_complexity Low_complexity 1 24 0 4 1441 210 264 0 52 chr3 112309348 112309444 -47290339 + GA-rich Low_complexity Low_complexity 2 92 0 4 1441 24 0 0 0 chr3 112309450 112309474 -47290309 + AT_rich Low_complexity Low_complexity 1 24 0 4 1441 345 125 0 0 chr3 112310352 112310408 -47289375 + (TA)n Simple_repeat Simple_repeat 2 57 0 4 1441 446 127 29 19 chr3 112311096 112311200 -47288583 + (TAGA)n Simple_repeat Simple_repeat 1 105 0 4 1441 215 216 0 0 chr3 112311209 112311246 -47288537 + (CAGG)n Simple_repeat Simple_repeat 3 39 0 4 1441 22 35 0 0 chr3 112312608 112312637 -47287146 + AT_rich Low_complexity Low_complexity 1 29 0 4 1441 24 32 0 0 chr3 112313435 112313466 -47286317 + AT_rich Low_complexity Low_complexity 1 31 0 4 1441 288 321 84 42 chr3 112314479 112314645 -47285138 + B4 SINE B4 106 278 -14 4 1441 456 51 0 0 chr3 112314651 112314710 -47285073 + (CA)n Simple_repeat Simple_repeat 1 59 0 4 1441 279 205 35 35 chr3 112314756 112314842 -47284941 - MTD LTR MaLR 0 419 334 4 1441 225 0 0 0 chr3 112315021 112315046 -47284737 + (A)n Simple_repeat Simple_repeat 1 25 0 4 1441 3149 194 102 146 chr3 112315132 112316193 -47283590 + RLTR25B LTR ERVK 15 1028 0 4 1441 2927 196 45 87 chr3 112316195 112317098 -47282685 - Lx6 LINE L1 -1425 6035 5141 4 1441 3225 234 30 101 chr3 112317096 112318312 -47281471 - Lx6 LINE L1 -1227 4653 3524 4 1441 1031 196 28 59 chr3 112318364 112318543 -47281240 - Lx6 LINE L1 -3775 2105 1937 4 1441 2816 73 281 14 chr3 112318543 112318985 -47280798 + LTRIS2 LTR ERV1 5 564 0 4 1441 1031 196 28 59 chr3 112318985 112319125 -47280658 - Lx6 LINE L1 -3944 1936 1796 4 1441 22 35 0 0 chr3 112319142 112319171 -47280612 + AT_rich Low_complexity Low_complexity 1 29 0 4 1441 239 278 34 97 chr3 112319381 112319556 -47280227 + B2_Mm2 SINE B2 27 190 -5 4 1441 2060 123 6 52 chr3 112319937 112320280 -47279503 + ORR1A2 LTR MaLR 1 327 0 4 1441 2081 165 102 5 chr3 112320457 112320870 -47278913 + L1_Mur2 LINE L1 4629 5081 -796 4 1441 3443 224 146 6 chr3 112320862 112321711 -47278072 + Lx4B LINE L1 6084 7051 -7 4 1441 3777 61 2 0 chr3 112322174 112322651 -47277132 + L1Md_F2 LINE L1 6093 6570 -12 4 1441 563 335 110 60 chr3 112322699 112323198 -47276585 + MT2A LTR ERVL 8 531 -2 4 1441 1292 271 88 10 chr3 112323466 112323850 -47275933 + MTD LTR MaLR 5 418 -1 4 1441 568 14 0 0 chr3 112327456 112327528 -47272255 + L1Md_T LINE L1 6511 6582 0 4 1441 544 152 27 0 chr3 112327579 112327691 -47272092 + (CATA)n Simple_repeat Simple_repeat 2 116 0 4 1441 189 250 0 0 chr3 112327691 112327751 -47272032 + (TG)n Simple_repeat Simple_repeat 1 60 0 4 1441 1062 107 0 0 chr3 112327973 112328113 -47271670 + B1_Mus1 SINE Alu 1 140 -8 4 1441 524 89 13 0 chr3 112328114 112328193 -47271590 + (GAGAA)n Simple_repeat Simple_repeat 1 80 0 4 1441 1265 78 6 0 chr3 112328193 112328372 -47271411 + (GGGAA)n Simple_repeat Simple_repeat 1 180 0 4 1441 518 304 0 7 chr3 112328392 112328528 -47271255 + RSINE1 SINE B4 3 137 -28 4 1442 360 0 0 0 chr3 112329433 112329473 -47270310 + (TG)n Simple_repeat Simple_repeat 2 41 0 4 1442 456 294 37 0 chr3 112329589 112329725 -47270058 - B1_Mur2 SINE Alu -7 142 2 4 1442 18375 107 14 21 chr3 112330109 112331319 -47268464 - L1_Mus2 LINE L1 0 6566 5361 4 1442 387 0 0 0 chr3 112331319 112331362 -47268421 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 4 1442 20066 138 5 24 chr3 112331362 112335878 -47263905 - L1_Mus2 LINE L1 -523 5360 926 4 1442 1973 174 18 12 chr3 112335871 112336213 -47263570 + L1VL1 LINE L1 2 345 -6077 4 1442 30323 103 18 17 chr3 112336208 112341563 -47258220 + L1Md_F2 LINE L1 233 5584 -299 4 1442 7591 65 5 2 chr3 112341565 112342545 -47257238 + L1Md_F2 LINE L1 5587 6569 -13 4 1442 966 214 41 22 chr3 112342566 112342833 -47256950 - L1Md_F LINE L1 -5670 849 578 4 1442 280 230 43 73 chr3 112344476 112344640 -47255143 - Lx9 LINE L1 -5 7639 7481 4 1442 222 250 46 9 chr3 112344649 112344758 -47255025 + (TA)n Simple_repeat Simple_repeat 1 113 0 4 1442 2021 253 56 18 chr3 112344758 112345329 -47254454 - Lx9 LINE L1 -213 7431 6839 4 1442 242 87 22 0 chr3 112345817 112345863 -47253920 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 4 1442 1581 232 72 5 chr3 112346503 112346893 -47252890 + MTC LTR MaLR 3 418 -3 4 1442 34 55 0 0 chr3 112347501 112347556 -47252227 + AT_rich Low_complexity Low_complexity 1 55 0 4 1442 263 295 63 13 chr3 112349684 112349763 -47250020 - Tigger5 DNA MER2_type -1 2405 2323 4 1442 468 0 0 0 chr3 112349865 112349917 -47249866 + (CA)n Simple_repeat Simple_repeat 1 52 0 4 1442 883 260 89 67 chr3 112350762 112351121 -47248662 + RMER2 LTR ERV1 197 563 -4 5 1442 36 91 0 0 chr3 112351237 112351336 -47248447 + AT_rich Low_complexity Low_complexity 1 99 0 5 1442 21 36 0 0 chr3 112351588 112351616 -47248167 + AT_rich Low_complexity Low_complexity 1 28 0 5 1442 24 53 0 0 chr3 112351921 112351959 -47247824 + AT_rich Low_complexity Low_complexity 1 38 0 5 1442 4795 36 0 3 chr3 112352148 112352725 -47247058 - L1Md_F2 LINE L1 0 6582 6008 5 1442 651 38 0 0 chr3 112352725 112352805 -47246978 + L1_Mm LINE L1 5162 5241 -642 5 1442 235 340 29 29 chr3 112353063 112353166 -47246617 + MER21B LTR ERV1 20 122 -741 5 1442 21 0 0 0 chr3 112353957 112353978 -47245805 + AT_rich Low_complexity Low_complexity 1 21 0 5 1442 531 0 0 0 chr3 112355114 112355173 -47244610 + (TTTTG)n Simple_repeat Simple_repeat 2 60 0 5 1442 21 36 0 0 chr3 112355690 112355718 -47244065 + AT_rich Low_complexity Low_complexity 1 28 0 5 1442 703 319 6 0 chr3 112355735 112355898 -47243885 - B3 SINE B2 -52 164 1 5 1442 21 71 0 0 chr3 112355928 112355970 -47243813 + AT_rich Low_complexity Low_complexity 1 42 0 5 1442 2885 45 0 8 chr3 112356115 112356478 -47243305 - L1Md_F3 LINE L1 0 6584 6225 5 1442 32 0 0 0 chr3 112356571 112356603 -47243180 + AT_rich Low_complexity Low_complexity 1 32 0 5 1442 423 266 50 38 chr3 112357807 112357967 -47241816 + RSINE1 SINE B4 4 165 0 5 1442 30 59 0 0 chr3 112357967 112358018 -47241765 + AT_rich Low_complexity Low_complexity 1 51 0 5 1442 214 278 208 0 chr3 112358061 112358133 -47241650 + PB1D10 SINE Alu 1 87 -30 5 1442 456 242 130 96 chr3 112358321 112358528 -47241255 - B3A SINE B2 -2 214 3 5 1442 732 23 0 0 chr3 112358542 112358628 -47241155 + (TTC)n Simple_repeat Simple_repeat 2 87 0 5 1442 335 281 99 21 chr3 112358628 112358770 -47241013 - L1M2 LINE L1 -2793 3350 3198 5 1442 23 0 0 0 chr3 112359409 112359432 -47240351 + AT_rich Low_complexity Low_complexity 1 23 0 5 1442 288 254 63 0 chr3 112359542 112359605 -47240178 + ID4 SINE ID 17 83 0 5 1442 527 305 122 34 chr3 112360260 112360555 -47239228 - Lx8 LINE L1 0 7473 7153 5 1442 479 311 33 95 chr3 112360611 112360853 -47238930 - Lx8 LINE L1 -608 6865 6639 5 1442 21 36 0 0 chr3 112360961 112360989 -47238794 + AT_rich Low_complexity Low_complexity 1 28 0 5 1442 2978 90 7 16 chr3 112361132 112361573 -47238210 + L1Md_F2 LINE L1 6142 6578 -4 5 1442 5722 122 11 13 chr3 112361792 112362687 -47237096 + Lx3B LINE L1 6079 6971 -2 5 1442 38 51 0 0 chr3 112362687 112362746 -47237037 + AT_rich Low_complexity Low_complexity 1 59 0 5 1442 1068 226 99 3 chr3 112363078 112363371 -47236412 + L1_Mur3 LINE L1 5358 5678 -202 5 1442 225 0 0 0 chr3 112363372 112363397 -47236386 + (T)n Simple_repeat Simple_repeat 1 25 0 5 1442 39303 30 1 7 chr3 112363417 112369518 -47230265 - L1Md_T LINE L1 0 6582 525 5 1442 2417 312 82 65 chr3 112369520 112370744 -47229039 + Lx5 LINE L1 5673 6917 -133 5 1442 188 34 0 33 chr3 112370752 112370782 -47229001 + (TTTTTG)n Simple_repeat Simple_repeat 3 31 0 5 1442 567 29 0 0 chr3 112370782 112370851 -47228932 + (TG)n Simple_repeat Simple_repeat 2 70 0 5 1442 391 264 44 58 chr3 112370852 112370989 -47228794 + Lx6 LINE L1 7295 7429 -31 5 1442 355 337 106 20 chr3 112371718 112371972 -47227811 + B4A SINE B4 1 276 -16 5 1442 216 262 71 59 chr3 112372476 112372561 -47227222 + BC1_Mm scRNA scRNA 10 95 -57 5 1442 210 57 0 79 chr3 112373374 112373412 -47226371 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 5 1442 1148 83 0 0 chr3 112373960 112374105 -47225678 + B1_Mm SINE Alu 2 146 -1 5 1442 1359 67 0 0 chr3 112374120 112374299 -47225484 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 5 1442 780 68 0 0 chr3 112375193 112375296 -47224487 + (TA)n Simple_repeat Simple_repeat 1 103 0 5 1442 366 80 0 0 chr3 112375296 112375345 -47224438 + (CA)n Simple_repeat Simple_repeat 2 51 0 5 1442 303 122 0 0 chr3 112375345 112375394 -47224389 + (TG)n Simple_repeat Simple_repeat 1 49 0 5 1442 621 262 124 14 chr3 112375416 112375633 -47224150 - Lx6 LINE L1 -27 7433 7193 5 1442 1012 266 77 22 chr3 112375661 112375984 -47223799 + Lx6 LINE L1 6545 6885 -575 5 1442 240 288 152 32 chr3 112376108 112376266 -47223517 + LTR48 LTR ERV1 295 471 -316 5 1442 3855 61 2 4 chr3 112376459 112376952 -47222831 - L1Md_F2 LINE L1 -1 6581 6090 5 1442 909 162 0 0 chr3 112377745 112377893 -47221890 + Lx2B LINE L1 6356 6503 -497 5 1442 3099 160 2 12 chr3 112377892 112378450 -47221333 + L1_Mur2 LINE L1 4254 4805 -1072 5 1442 283 193 182 0 chr3 112378443 112378531 -47221252 + Lx9 LINE L1 7519 7622 -22 5 1442 1233 96 90 0 chr3 112378535 112378723 -47221060 + L1_Mus3 LINE L1 6434 6638 0 5 1442 890 114 96 6 chr3 112378880 112379047 -47220736 - B2_Mm2 SINE B2 -9 186 5 5 1442 287 316 84 100 chr3 112379068 112379258 -47220525 - B3 SINE B2 0 216 30 5 1442 258 81 0 0 chr3 112379308 112379345 -47220438 + (CA)n Simple_repeat Simple_repeat 2 38 0 5 1442 274 257 35 30 chr3 112379376 112379586 -47220197 + L1M5 LINE L1 4282 4491 -1649 5 1442 243 164 0 35 chr3 112380147 112380204 -47219579 + T-rich Low_complexity Low_complexity 1 55 0 5 1442 1478 96 22 9 chr3 112380738 112380969 -47218814 - L1_Mus3 LINE L1 -7 6631 6398 5 1442 3159 91 23 0 chr3 112380969 112381409 -47218374 + L1_Mus3 LINE L1 5946 6395 -243 5 1442 598 290 142 31 chr3 112381685 112382001 -47217782 - Tigger1 DNA MER2_type -210 2208 1866 5 1442 4812 120 13 65 chr3 112382001 112382848 -47216935 + RLTR13B4 LTR ERVK 1 803 0 5 1442 598 290 142 31 chr3 112382848 112382976 -47216807 - Tigger1 DNA MER2_type -553 1865 1715 5 1442 242 321 47 9 chr3 112382977 112383084 -47216699 - Tigger1 DNA MER2_type -1682 736 626 5 1442 23 33 0 0 chr3 112383175 112383205 -47216578 + AT_rich Low_complexity Low_complexity 1 30 0 5 1442 1402 90 5 0 chr3 112383498 112383686 -47216097 - Lx3_Mus LINE L1 -1217 5792 5604 5 1442 206 246 0 32 chr3 112383697 112383760 -47216023 + (GGGTG)n Simple_repeat Simple_repeat 4 64 0 5 1442 411 164 47 54 chr3 112383770 112383899 -47215884 + Lx3B LINE L1 6844 6971 -2 5 1442 819 0 0 0 chr3 112383912 112384003 -47215780 + (GAA)n Simple_repeat Simple_repeat 3 93 0 5 1442 1249 275 220 16 chr3 112384148 112384819 -47214964 - RMER1B Other Other -175 891 60 5 1442 342 221 85 19 chr3 112385278 112385384 -47214399 + RMER5 LTR ERV1 72 184 -350 5 1442 6968 38 1 0 chr3 112385993 112386976 -47212807 - L1Md_F2 LINE L1 -560 6022 5039 5 1442 2435 105 155 2 chr3 112386976 112387388 -47212395 + IAPLTR2_Mm LTR ERVK 1 475 0 5 1442 3510 92 19 31 chr3 112387389 112388217 -47211566 + IAPEz-int LTR ERVK 9 662 -5819 5 1442 2222 65 0 0 chr3 112388217 112388495 -47211288 + IAPEz-int LTR ERVK 1359 1636 -4845 5 1442 5844 51 5 19 chr3 112388494 112389248 -47210535 + IAPEz-int LTR ERVK 5736 6479 -2 5 1442 2416 98 158 2 chr3 112389250 112389661 -47210122 + IAPLTR2_Mm LTR ERVK 1 475 0 5 1442 26759 105 8 11 chr3 112389662 112394488 -47205295 - L1Md_A LINE L1 -840 5043 259 5 1442 3033 69 0 20 chr3 112395018 112395420 -47204363 - L1_Mus1 LINE L1 0 6567 6174 5 1442 248 143 0 18 chr3 112395480 112395537 -47204246 + T-rich Low_complexity Low_complexity 2 57 0 5 1442 445 282 24 0 chr3 112396025 112396149 -47203634 + Tigger1 DNA MER2_type 593 719 -1699 5 1442 600 293 87 85 chr3 112396160 112396327 -47203456 + Tigger1 DNA MER2_type 1708 1871 -547 5 1442 445 81 0 51 chr3 112396327 112396405 -47203378 + Lx LINE L1 6574 6647 -7 5 1442 600 293 87 85 chr3 112396405 112396752 -47203031 + Tigger1 DNA MER2_type 1872 2222 -196 5 1442 24 32 0 0 chr3 112396844 112396875 -47202908 + AT_rich Low_complexity Low_complexity 1 31 0 5 1442 521 278 41 12 chr3 112397147 112397183 -47202600 - Lx8 LINE L1 -383 7090 7055 5 1442 3837 47 95 0 chr3 112397183 112397678 -47202105 - L1Md_F3 LINE L1 -14 6570 6029 5 1442 521 278 41 12 chr3 112397678 112397812 -47201971 - Lx8 LINE L1 -419 7054 6915 5 1442 262 349 68 89 chr3 112398127 112398363 -47201420 - MIR SINE MIR -2 260 30 5 1442 21 0 0 0 chr3 112398731 112398752 -47201031 + AT_rich Low_complexity Low_complexity 1 21 0 5 1442 281 321 189 23 chr3 112400461 112400660 -47199123 - MTEb LTR MaLR -6 373 142 5 1442 281 207 12 0 chr3 112401894 112401976 -47197807 - Lx3C LINE L1 -4 6972 6890 5 1442 1482 226 71 20 chr3 112402450 112402802 -47196981 - MTC LTR MaLR 0 421 52 5 1442 24 0 0 0 chr3 112403007 112403031 -47196752 + AT_rich Low_complexity Low_complexity 1 24 0 5 1442 953 120 0 0 chr3 112403031 112403164 -47196619 - B1_Mus1 SINE Alu -15 133 1 5 1442 1706 137 18 0 chr3 112403359 112403643 -47196140 + Lx2A1 LINE L1 6715 7003 -5 5 1442 26 30 0 0 chr3 112403868 112403901 -47195882 + AT_rich Low_complexity Low_complexity 1 33 0 5 1442 306 0 0 0 chr3 112404216 112404250 -47195533 + (TGAA)n Simple_repeat Simple_repeat 1 34 0 5 1442 495 0 0 0 chr3 112404383 112404438 -47195345 + (GA)n Simple_repeat Simple_repeat 2 56 0 5 1442 2126 34 11 15 chr3 112405051 112405324 -47194459 + L1Md_F3 LINE L1 6312 6583 -1 5 1442 25 51 0 0 chr3 112405324 112405363 -47194420 + AT_rich Low_complexity Low_complexity 1 39 0 5 1442 22 0 0 0 chr3 112407101 112407123 -47192660 + AT_rich Low_complexity Low_complexity 1 22 0 5 1442 231 157 0 0 chr3 112407657 112407708 -47192075 + (TTA)n Simple_repeat Simple_repeat 1 51 0 5 1442 728 45 0 0 chr3 112409836 112409925 -47189858 - L1Md_F3 LINE L1 -240 6342 6254 5 1442 1134 69 0 34 chr3 112409925 112410104 -47189679 + L1Md_F3 LINE L1 6412 6584 0 5 1442 843 265 60 124 chr3 112410148 112410614 -47189169 - RMER2 LTR ERV1 -28 539 104 5 1442 1230 117 0 6 chr3 112411017 112411197 -47188586 + RLTR13D6 LTR ERVK 8 186 -716 5 1442 213 39 0 0 chr3 112411197 112411223 -47188560 + (TTTTA)n Simple_repeat Simple_repeat 2 27 0 5 1442 2049 66 15 0 chr3 112411263 112411535 -47188248 - L1_Mus1 LINE L1 0 6567 6292 5 1442 11576 94 9 1 chr3 112411540 112412923 -47186860 + L1_Mm LINE L1 2090 3483 -2400 5 1442 630 31 31 10 chr3 112412923 112413020 -47186763 + (CAAA)n Simple_repeat Simple_repeat 2 100 0 5 1442 11576 94 9 1 chr3 112413020 112413317 -47186466 + L1_Mm LINE L1 3484 3784 -2099 5 1442 4091 141 14 91 chr3 112413317 112414131 -47185652 + RLTR13D6 LTR ERVK 147 897 -5 5 1442 279 0 0 0 chr3 112414185 112414216 -47185567 + (CA)n Simple_repeat Simple_repeat 2 32 0 5 1442 25 90 0 0 chr3 112414348 112414415 -47185368 + AT_rich Low_complexity Low_complexity 1 67 0 5 1442 362 376 128 36 chr3 112414784 112415035 -47184748 - MLT1H LTR MaLR -177 372 99 5 1442 895 209 212 20 chr3 112415190 112415483 -47184300 + ORR1C2 LTR MaLR 1 349 -35 6 1442 410 179 45 54 chr3 112416026 112416138 -47183645 + Lx4B LINE L1 6944 7054 -4 6 1442 306 243 7 218 chr3 112416367 112416509 -47183274 + MTD LTR MaLR 1 142 -277 6 1442 522 341 64 47 chr3 112416519 112416851 -47182932 + MT2A LTR ERVL 179 516 -17 6 1442 330 26 0 0 chr3 112416851 112416890 -47182893 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 6 1442 522 341 64 47 chr3 112416890 112416901 -47182882 + MT2A LTR ERVL 517 527 -6 6 1442 25 0 0 0 chr3 112417542 112417567 -47182216 + AT_rich Low_complexity Low_complexity 1 25 0 6 1442 189 171 0 0 chr3 112418268 112418303 -47181480 + T-rich Low_complexity Low_complexity 1 35 0 6 1442 820 91 0 0 chr3 112418306 112418427 -47181356 - L1_Mus1 LINE L1 -1 6566 6446 6 1442 336 95 0 13 chr3 112418427 112418482 -47181301 + L1_Mus1 LINE L1 6383 6478 -160 6 1442 222 156 0 0 chr3 112418504 112418549 -47181234 + (CA)n Simple_repeat Simple_repeat 2 46 0 6 1442 3371 184 58 7 chr3 112419085 112419760 -47180023 + RMER6D LTR ERVK 1 709 -11 6 1442 213 295 130 37 chr3 112420173 112420335 -47179448 + MIRb SINE MIR 86 262 0 6 1442 305 360 75 53 chr3 112420655 112420881 -47178902 - LTR52 LTR ERVL -176 245 15 6 1442 234 292 9 28 chr3 112421053 112421162 -47178621 + CT-rich Low_complexity Low_complexity 3 109 0 6 1442 3214 186 78 18 chr3 112422051 112422730 -47177053 + RMER6D LTR ERVK 1 720 0 6 1442 892 126 0 15 chr3 112422816 112422953 -47176830 + B1_Mus1 SINE Alu 2 136 -12 6 1442 180 0 0 0 chr3 112422953 112422973 -47176810 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 6 1442 260 323 186 0 chr3 112422990 112423114 -47176669 - MTEa LTR MaLR -3 376 230 6 1442 295 314 68 54 chr3 112423596 112423744 -47176039 - MTEa LTR MaLR -229 150 1 6 1442 1047 83 14 0 chr3 112424530 112424675 -47175108 + B1_Mus2 SINE Alu 1 147 0 6 1442 347 390 77 19 chr3 112424941 112425265 -47174518 - MLT1A0 LTR MaLR -10 355 13 6 1442 273 345 47 27 chr3 112425290 112425439 -47174344 - B3A SINE B2 -38 160 9 6 1442 3466 169 75 13 chr3 112425463 112425974 -47173809 - RLTR33 LTR ERVK 0 678 135 6 1442 5167 149 47 37 chr3 112425974 112426947 -47172836 - RLTR13C1 LTR ERVK 0 983 1 6 1442 3466 169 75 13 chr3 112426947 112427066 -47172717 - RLTR33 LTR ERVK -544 134 9 6 1442 1440 185 71 7 chr3 112427767 112428061 -47171722 + Lx2 LINE L1 6684 6996 -1 6 1442 1173 129 30 14 chr3 112429394 112429641 -47170142 - Lx3C LINE L1 -1063 5987 5746 6 1442 786 235 53 18 chr3 112429642 112429867 -47169916 + Lx2B LINE L1 6024 6256 -744 6 1442 1144 227 79 10 chr3 112429841 112430144 -47169639 + Lx3C LINE L1 6493 6816 -160 6 1442 1688 154 80 3 chr3 112430145 112430431 -47169352 - Lx2B LINE L1 -428 6572 6265 6 1442 258 175 31 16 chr3 112430436 112430500 -47169283 + Lx4B LINE L1 6986 7050 -8 6 1442 2583 141 82 23 chr3 112430512 112430997 -47168786 + Lx2B LINE L1 6481 6994 -6 6 1442 553 350 24 10 chr3 112431174 112431379 -47168404 + B3 SINE B2 2 209 -7 6 1442 1064 90 7 0 chr3 112431489 112431634 -47168149 - B1_Mus1 SINE Alu 0 148 3 6 1442 21 57 0 0 chr3 112431638 112431673 -47168110 + AT_rich Low_complexity Low_complexity 1 35 0 6 1442 21 36 0 0 chr3 112432243 112432271 -47167512 + AT_rich Low_complexity Low_complexity 1 28 0 6 1442 4460 136 21 31 chr3 112433490 112434258 -47165525 + Lx2 LINE L1 6237 6996 -1 6 1442 1665 257 73 108 chr3 112434405 112434879 -47164904 + Lx7 LINE L1 6816 7328 -368 6 1442 839 87 0 8 chr3 112434879 112435006 -47164777 + (TTCC)n Simple_repeat Simple_repeat 4 129 0 6 1442 1665 257 73 108 chr3 112435006 112435192 -47164591 + Lx7 LINE L1 7329 7451 -245 6 1442 234 0 0 0 chr3 112435192 112435218 -47164565 + (TA)n Simple_repeat Simple_repeat 2 27 0 6 1442 1665 257 73 108 chr3 112435218 112435294 -47164489 + Lx7 LINE L1 7452 7527 -169 6 1442 499 263 79 37 chr3 112435279 112435520 -47164263 + Lx7 LINE L1 7446 7696 0 6 1442 1116 82 0 7 chr3 112435921 112436069 -47163714 + B1_Mus1 SINE Alu 2 148 0 6 1442 248 226 0 70 chr3 112436421 112436478 -47163305 - RLTR15 LTR ERVK -3 356 304 6 1442 6942 208 27 35 chr3 112436746 112438836 -47160947 + L1_Mur2 LINE L1 919 2991 -2886 6 1442 6463 131 39 3 chr3 112438834 112439960 -47159823 + Lx LINE L1 5479 6645 -9 6 1442 3260 185 9 5 chr3 112439974 112440632 -47159151 + L1_Mur2 LINE L1 2980 3640 -2237 6 1442 2288 104 111 42 chr3 112440626 112441057 -47158726 + Lx3B LINE L1 5861 6321 -652 6 1442 2815 176 6 2 chr3 112441046 112441574 -47158209 + L1_Mur2 LINE L1 4446 4975 -902 6 1442 1639 221 10 0 chr3 112441575 112441883 -47157900 - ORR1B1 LTR MaLR -83 311 1 6 1442 528 81 0 0 chr3 112442418 112442492 -47157291 + (CA)n Simple_repeat Simple_repeat 2 75 0 6 1442 2444 183 44 19 chr3 112443101 112443619 -47156164 - Lx LINE L1 -12 6642 6112 6 1442 26 30 0 0 chr3 112443677 112443710 -47156073 + AT_rich Low_complexity Low_complexity 1 33 0 6 1442 180 0 0 0 chr3 112443764 112443784 -47155999 + (TG)n Simple_repeat Simple_repeat 2 21 0 6 1442 471 370 20 28 chr3 112443855 112444108 -47155675 - Lx8 LINE L1 -251 7222 6972 6 1442 801 123 0 0 chr3 112444500 112444638 -47155145 + (CA)n Simple_repeat Simple_repeat 2 139 0 6 1442 640 350 48 14 chr3 112444723 112445079 -47154704 - Lx8 LINE L1 -574 6899 6532 6 1442 412 346 49 46 chr3 112445111 112445396 -47154387 - Lx8 LINE L1 -1056 6417 6132 6 1442 5968 147 11 2 chr3 112447360 112448339 -47151444 + Lx3_Mus LINE L1 5999 6986 -23 6 1442 1083 120 0 0 chr3 112448339 112448506 -47151277 + (GAAA)n Simple_repeat Simple_repeat 1 167 0 6 1442 952 162 0 0 chr3 112448890 112449038 -47150745 - B1_Mus1 SINE Alu 0 148 1 6 1442 881 35 0 9 chr3 112450719 112450833 -47148950 + (GAAA)n Simple_repeat Simple_repeat 2 114 0 6 1442 6602 159 77 11 chr3 112451419 112452703 -47147080 - Lx2 LINE L1 -1 6996 5627 6 1442 344 280 9 9 chr3 112452704 112452812 -47146971 + Lx3B LINE L1 6862 6969 -4 6 1442 27 0 0 0 chr3 112452821 112452848 -47146935 + AT_rich Low_complexity Low_complexity 1 27 0 6 1442 2270 162 73 10 chr3 112452903 112453197 -47146586 + L1_Mur2 LINE L1 4624 4933 -944 6 1442 357 24 0 0 chr3 112453197 112453239 -47146544 + (TA)n Simple_repeat Simple_repeat 2 43 0 6 1442 2270 162 73 10 chr3 112453239 112453437 -47146346 + L1_Mur2 LINE L1 4934 5146 -731 6 1442 229 171 49 0 chr3 112453439 112453480 -47146303 + Charlie6 DNA MER1_type 1922 1964 -1536 6 1442 640 100 0 0 chr3 112454132 112454232 -47145551 - L1_Mus1 LINE L1 0 6567 6468 6 1442 216 0 0 0 chr3 112454232 112454256 -47145527 + (A)n Simple_repeat Simple_repeat 1 24 0 6 1442 4513 107 11 1 chr3 112454864 112455519 -47144264 + L1_Mus3 LINE L1 5972 6632 -6 6 1442 33 43 0 0 chr3 112456118 112456165 -47143618 + AT_rich Low_complexity Low_complexity 1 47 0 6 1442 478 355 19 44 chr3 112456470 112456676 -47143107 + B4A SINE B4 42 242 -50 6 1442 387 60 0 0 chr3 112456961 112457011 -47142772 + (TTTA)n Simple_repeat Simple_repeat 3 52 0 6 180 34100 91 3 8 chr3 112457014 112463186 -47136597 - L1Md_F2 LINE L1 -6 6576 234 6 1443 528 45 0 0 chr3 112463320 112463387 -47136396 + (GA)n Simple_repeat Simple_repeat 2 68 0 6 1443 2666 94 17 17 chr3 112463747 112464149 -47135634 - L1Md_F2 LINE L1 -1 6581 6180 6 1443 234 0 0 0 chr3 112464272 112464298 -47135485 + (TTTTTG)n Simple_repeat Simple_repeat 3 28 0 6 1443 636 43 129 0 chr3 112464312 112464405 -47135378 - B1_Mm SINE Alu -1 146 42 6 1443 4321 49 26 5 chr3 112464401 112465009 -47134774 - MT-int LTR MaLR -118 1140 429 6 1443 21 36 0 0 chr3 112465335 112465363 -47134420 + AT_rich Low_complexity Low_complexity 1 28 0 6 1443 603 102 0 0 chr3 112465626 112465714 -47134069 + (TA)n Simple_repeat Simple_repeat 2 89 0 6 1443 2899 113 5 0 chr3 112466098 112466531 -47133252 - L1_Mus1 LINE L1 -400 5483 5049 6 1443 7295 82 19 0 chr3 112466530 112467598 -47132185 + L1_Mus1 LINE L1 5478 6565 -2 6 1443 21 0 0 0 chr3 112467599 112467620 -47132163 + AT_rich Low_complexity Low_complexity 1 21 0 6 1443 853 121 0 0 chr3 112467681 112467821 -47131962 - L1VL1 LINE L1 -5294 1128 989 6 1443 8100 110 14 7 chr3 112467810 112469802 -47129981 + L1_Mus2 LINE L1 4560 6566 0 6 1443 1176 75 0 0 chr3 112469900 112470046 -47129737 + B1_Mm SINE Alu 2 147 0 6 1443 198 0 0 0 chr3 112470049 112470071 -47129712 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 6 1443 225 357 8 57 chr3 112470587 112470709 -47129074 + L2a LINE L2 3301 3416 -10 6 1443 203 354 24 0 chr3 112470884 112470966 -47128817 + L2a LINE L2 3034 3117 -309 6 1443 1008 187 113 0 chr3 112471405 112471608 -47128175 - URR1A DNA MER1_type 0 226 1 6 1443 1307 192 0 0 chr3 112471970 112472215 -47127568 - L1_Mur2 LINE L1 -679 5198 4954 6 1443 2708 216 9 17 chr3 112472227 112472805 -47126978 + Lx4B LINE L1 6479 7051 -7 6 1443 5757 157 42 30 chr3 112472992 112474237 -47125546 + L1_Mur1 LINE L1 211 1477 -4409 6 1443 537 131 10 29 chr3 112474304 112474406 -47125377 - Lx3A LINE L1 -9 6972 6873 6 1443 1489 118 18 5 chr3 112474414 112474636 -47125147 - Lx3A LINE L1 -480 6501 6277 6 1443 6779 160 34 18 chr3 112479486 112480733 -47119050 - Lx2 LINE L1 -5 6992 5726 6 1443 4858 53 2 3 chr3 112481470 112482077 -47117706 - L1Md_F2 LINE L1 -11 6571 5966 6 1443 2355 199 75 32 chr3 112482123 112482679 -47117104 - Lx3C LINE L1 -2 6974 6395 6 1443 1067 123 0 0 chr3 112482676 112482847 -47116936 + L1_Mur1 LINE L1 2820 2990 -2896 6 1443 2912 94 57 4 chr3 112482852 112483330 -47116453 + MusHAL1 LINE L1 1583 2085 -627 6 1443 21 0 0 0 chr3 112483900 112483921 -47115862 + AT_rich Low_complexity Low_complexity 1 21 0 6 1443 712 151 0 0 chr3 112483923 112484042 -47115741 + L1_Mur1 LINE L1 3001 3119 -2767 6 1443 9530 186 36 34 chr3 112484038 112485453 -47114330 - L1_Mur2 LINE L1 -2403 3474 2054 6 1443 441 0 0 0 chr3 112485453 112485502 -47114281 + (TG)n Simple_repeat Simple_repeat 2 50 0 6 1443 9530 186 36 34 chr3 112485502 112485591 -47114192 - L1_Mur2 LINE L1 -3824 2053 1995 6 1443 303 28 0 0 chr3 112485591 112485627 -47114156 + (TG)n Simple_repeat Simple_repeat 2 37 0 6 1443 9530 186 36 34 chr3 112485627 112486048 -47113735 - L1_Mur2 LINE L1 -3883 1994 1556 6 1443 190 0 0 62 chr3 112486048 112486080 -47113703 + (TTTA)n Simple_repeat Simple_repeat 4 33 0 6 1443 9530 216 45 16 chr3 112486080 112486730 -47113053 - L1_Mur2 LINE L1 -4322 1555 814 6 1443 22 35 0 0 chr3 112486919 112486948 -47112835 + AT_rich Low_complexity Low_complexity 1 29 0 6 1443 545 84 0 24 chr3 112487131 112487216 -47112567 + (GAAAA)n Simple_repeat Simple_repeat 3 85 0 6 1443 934 158 55 22 chr3 112488011 112488179 -47111604 + B2_Mm2 SINE B2 1 176 -19 6 1443 186 43 0 0 chr3 112488179 112488202 -47111581 + (TTAA)n Simple_repeat Simple_repeat 3 25 0 6 1443 934 158 55 22 chr3 112488202 112488214 -47111569 + B2_Mm2 SINE B2 177 187 -8 6 1443 522 346 32 9 chr3 112488569 112488788 -47110995 - MER2 DNA MER2_type -1 344 121 6 1443 458 165 10 0 chr3 112488818 112488921 -47110862 + (TA)n Simple_repeat Simple_repeat 1 104 0 7 1443 22 0 0 0 chr3 112489021 112489043 -47110740 + AT_rich Low_complexity Low_complexity 1 22 0 7 1443 410 0 20 0 chr3 112489954 112490004 -47109779 + (TAGA)n Simple_repeat Simple_repeat 2 52 0 7 1443 564 95 0 0 chr3 112490120 112490204 -47109579 + (TA)n Simple_repeat Simple_repeat 2 85 0 7 1443 342 323 0 31 chr3 112490277 112490373 -47109410 + RSINE1 SINE B4 7 99 -66 7 1443 537 137 10 0 chr3 112490373 112490475 -47109308 + L1_Mus1 LINE L1 6465 6567 0 7 1443 21 36 0 0 chr3 112490547 112490575 -47109208 + AT_rich Low_complexity Low_complexity 1 28 0 7 1443 27 0 0 0 chr3 112492086 112492113 -47107670 + AT_rich Low_complexity Low_complexity 1 27 0 7 1443 1799 230 71 7 chr3 112492540 112492990 -47106793 - Lx4B LINE L1 -689 6369 5891 7 1443 665 330 49 42 chr3 112493175 112493460 -47106323 + B4A SINE B4 6 292 0 7 1443 311 239 56 0 chr3 112493612 112493683 -47106100 - B1_Mur2 SINE Alu -56 93 19 7 1443 766 204 0 0 chr3 112494589 112494721 -47105062 - B1_Mus1 SINE Alu -13 135 4 7 1443 251 140 120 0 chr3 112494721 112494771 -47105012 + Lx5 LINE L1 4942 4997 -880 7 1443 303 222 83 0 chr3 112494791 112494863 -47104920 - L1M2 LINE L1 -3321 2822 2745 7 1443 22 88 0 0 chr3 112495114 112495171 -47104612 + AT_rich Low_complexity Low_complexity 1 57 0 7 1443 2301 219 39 43 chr3 112495682 112495962 -47103821 + Lx5 LINE L1 5318 5596 -281 7 1443 1079 67 0 0 chr3 112495962 112496096 -47103687 + B1_Mus2 SINE Alu 1 134 -13 7 1443 363 23 0 0 chr3 112496096 112496140 -47103643 + (CAAA)n Simple_repeat Simple_repeat 1 44 0 7 1443 2301 219 39 43 chr3 112496140 112496416 -47103367 + Lx5 LINE L1 5597 5872 -5 7 1443 1272 267 48 20 chr3 112496416 112496808 -47102975 + Lx5 LINE L1 6123 6741 -719 7 1443 297 109 0 0 chr3 112496809 112496855 -47102928 + (TAA)n Simple_repeat Simple_repeat 1 46 0 7 1443 22 0 0 0 chr3 112496865 112496887 -47102896 + AT_rich Low_complexity Low_complexity 1 22 0 7 1443 316 285 50 16 chr3 112497422 112497604 -47102179 + L1_Rod LINE L1 5643 5830 -17 7 1443 1294 291 92 9 chr3 112497654 112498108 -47101675 + Lx8 LINE L1 6651 7142 -331 7 1443 487 198 11 0 chr3 112498108 112498199 -47101584 + B1_Mur3 SINE Alu 52 143 -6 7 1443 235 315 22 33 chr3 112498410 112498502 -47101281 + MTEa LTR MaLR 279 369 -10 7 1443 1277 170 185 0 chr3 112498548 112498824 -47100959 - ORR1A4 LTR MaLR 0 329 3 7 1443 212 59 0 29 chr3 112498904 112498939 -47100844 + (TTA)n Simple_repeat Simple_repeat 2 35 0 7 1443 5411 67 0 0 chr3 112499224 112499912 -47099871 - L1_Mus1 LINE L1 0 6567 5880 7 1443 1733 73 4 8 chr3 112500000 112500236 -47099547 - RLTRETN_Mm LTR ERVK -87 235 1 1 1443 2478 108 17 0 chr3 112500259 112500621 -47099162 + L1_Mm LINE L1 5210 5577 -306 2 1443 561 72 0 0 chr3 112502284 112502367 -47097416 + (CA)n Simple_repeat Simple_repeat 2 84 0 3 1443 21 0 0 0 chr3 112503169 112503190 -47096593 + AT_rich Low_complexity Low_complexity 1 21 0 4 1443 231 217 0 0 chr3 112503607 112503667 -47096116 + (TA)n Simple_repeat Simple_repeat 2 61 0 5 1443 751 185 46 0 chr3 112504103 112504233 -47095550 + RMER6D LTR ERVK 1 136 -554 6 1443 1216 192 38 8 chr3 112504240 112504507 -47095276 - Lx3C LINE L1 -29 6947 6673 7 1443 459 128 109 0 chr3 112504507 112504629 -47095154 - RMER6D LTR ERVK -356 334 184 8 1443 1021 190 15 0 chr3 112504651 112504851 -47094932 + RMER6D LTR ERVK 145 347 -373 6 1443 778 68 8 8 chr3 112504863 112504982 -47094801 + (GA)n Simple_repeat Simple_repeat 2 120 0 9 1443 1936 167 22 25 chr3 112505027 112505383 -47094400 - L1_Mur1 LINE L1 -155 5731 5377 1 1443 24 0 0 0 chr3 112507066 112507090 -47092693 + AT_rich Low_complexity Low_complexity 1 24 0 1 1443 194 300 57 0 chr3 112508520 112508590 -47091193 - MIR3 SINE MIR -14 194 121 1 1443 297 187 32 0 chr3 112508887 112509010 -47090773 + (TCTCTG)n Simple_repeat Simple_repeat 4 130 0 1 1443 595 337 124 30 chr3 112509282 112509652 -47090131 - MTD LTR MaLR -14 405 1 1 1443 203 200 33 16 chr3 112509837 112509866 -47089917 + (CATA)n Simple_repeat Simple_repeat 3 31 0 1 1443 695 123 8 0 chr3 112509866 112509988 -47089795 + (TAGA)n Simple_repeat Simple_repeat 3 125 0 1 1443 203 200 33 16 chr3 112509988 112510019 -47089764 + (CATA)n Simple_repeat Simple_repeat 4 35 0 1 1443 1246 309 65 41 chr3 112510064 112510675 -47089108 + Lx9 LINE L1 6399 7024 -620 1 1443 246 32 0 0 chr3 112511724 112511755 -47088028 + (TA)n Simple_repeat Simple_repeat 1 31 0 1 1443 653 201 74 49 chr3 112511755 112511907 -47087876 - B2_Mm2 SINE B2 -37 158 2 2 1443 6957 89 8 12 chr3 112511945 112512507 -47087276 - L1_Mus2 LINE L1 0 6566 6005 2 1443 3481 28 136 0 chr3 112512507 112512941 -47086842 - MT2_Mm LTR ERVL 0 493 1 2 1443 8207 105 5 5 chr3 112512941 112514278 -47085505 - L1_Mus2 LINE L1 -562 6004 4670 2 1443 198 0 0 0 chr3 112514278 112514300 -47085483 + (T)n Simple_repeat Simple_repeat 1 22 0 2 1443 547 261 65 73 chr3 112514513 112514559 -47085224 + Lx8 LINE L1 6133 6177 -1296 2 1443 651 125 0 0 chr3 112514559 112514663 -47085120 + (TA)n Simple_repeat Simple_repeat 2 105 0 2 1443 547 261 65 73 chr3 112514663 112514848 -47084935 + Lx8 LINE L1 6178 6362 -1111 2 1443 466 306 111 16 chr3 112514846 112515098 -47084685 + Lx8 LINE L1 7170 7445 -28 2 1443 21850 127 3 7 chr3 112515538 112519543 -47080240 - L1VL1 LINE L1 -1201 4682 692 2 1443 3972 34 15 8 chr3 112519543 112520022 -47079761 + LTRIS_Mm LTR ERV1 1 482 0 2 1443 5722 138 0 50 chr3 112520022 112520319 -47079464 - L1VL1 LINE L1 -5947 691 418 2 1443 425 208 40 2 chr3 112520832 112520937 -47078846 - B1_Mus2 SINE Alu -1 148 44 2 1443 2772 121 0 0 chr3 112520937 112521335 -47078448 - L1_Mus4 LINE L1 -398 6238 5841 2 1443 547 290 74 10 chr3 112521502 112521704 -47078079 - B3 SINE B2 -1 215 1 3 1443 188 135 27 0 chr3 112522187 112522224 -47077559 + CT-rich Low_complexity Low_complexity 3 40 0 3 1443 261 0 0 0 chr3 112522224 112522253 -47077530 + (TG)n Simple_repeat Simple_repeat 2 30 0 3 1443 529 390 64 47 chr3 112522277 112522638 -47077145 + MLT1E2 LTR MaLR 230 596 -31 3 1443 22 35 0 0 chr3 112522798 112522827 -47076956 + AT_rich Low_complexity Low_complexity 1 29 0 3 1443 232 186 55 41 chr3 112523012 112523085 -47076698 + L1MD2 LINE L1 5918 5991 -368 3 1443 207 139 0 0 chr3 112523795 112523831 -47075952 + (A)n Simple_repeat Simple_repeat 1 36 0 3 1443 3980 125 14 9 chr3 112524176 112524814 -47074969 + Lx LINE L1 5588 6178 -476 3 1443 6216 68 4 5 chr3 112524814 112525620 -47074163 - L1_Mus1 LINE L1 -5 6562 5758 3 1443 2667 111 48 35 chr3 112525618 112526076 -47073707 + Lx LINE L1 6191 6654 0 3 1443 2288 297 53 94 chr3 112526076 112527010 -47072773 + Lx LINE L1 6125 7680 -16 3 1443 267 236 28 0 chr3 112527048 112527120 -47072663 + L1MD2 LINE L1 6078 6151 -208 4 1443 1774 265 68 47 chr3 112527152 112527667 -47072116 - RMER2 LTR ERV1 -41 526 1 4 1443 30 0 0 44 chr3 112527792 112527821 -47071962 + AT_rich Low_complexity Low_complexity 1 29 0 4 1443 1843 146 0 16 chr3 112527821 112528127 -47071656 - Lx3A LINE L1 0 6981 6681 4 1443 30 0 0 44 chr3 112528127 112528142 -47071641 + AT_rich Low_complexity Low_complexity 1 14 0 4 1443 465 216 81 111 chr3 112528160 112528348 -47071435 - Lx7 LINE L1 0 7696 7529 4 1443 2981 128 4 24 chr3 112528348 112528799 -47070984 + Lx LINE L1 6161 6606 -48 4 1443 2578 67 0 75 chr3 112528799 112529173 -47070610 - ORR1A1 LTR MaLR 0 346 1 4 1443 2981 128 4 24 chr3 112529173 112529217 -47070566 + Lx LINE L1 6607 6646 -8 4 1443 465 216 81 111 chr3 112529217 112529289 -47070494 - Lx7 LINE L1 -168 7528 7444 4 1443 3471 105 61 2 chr3 112530142 112530666 -47069117 - Lx3A LINE L1 -289 6692 6138 4 1443 495 0 0 0 chr3 112532413 112532468 -47067315 + (TAGA)n Simple_repeat Simple_repeat 2 56 0 4 1443 1233 107 0 0 chr3 112532468 112532685 -47067098 + (TAGG)n Simple_repeat Simple_repeat 1 217 0 5 1443 281 336 100 8 chr3 112532794 112532914 -47066869 + RSINE1 SINE B4 4 134 -31 5 1443 321 26 0 0 chr3 112532947 112532985 -47066798 + (CA)n Simple_repeat Simple_repeat 1 38 0 5 1443 253 284 0 43 chr3 112533000 112533162 -47066621 + A-rich Low_complexity Low_complexity 6 160 0 5 1443 343 320 78 63 chr3 112533509 112533830 -47065953 + L1MD LINE L1 2249 2574 -3572 5 1443 249 33 0 0 chr3 112534180 112534210 -47065573 + (CA)n Simple_repeat Simple_repeat 1 30 0 5 1443 36839 48 9 8 chr3 112536837 112542876 -47056907 - L1Md_F2 LINE L1 -1 6581 543 5 1443 620 270 30 6 chr3 112543130 112543294 -47056489 - B3A SINE B2 -30 168 1 5 1443 23 54 0 0 chr3 112543596 112543633 -47056150 + AT_rich Low_complexity Low_complexity 1 37 0 5 1443 23 0 0 0 chr3 112543972 112543995 -47055788 + AT_rich Low_complexity Low_complexity 1 23 0 5 1443 25 0 0 0 chr3 112544180 112544205 -47055578 + AT_rich Low_complexity Low_complexity 1 25 0 6 1443 481 310 14 23 chr3 112544217 112544410 -47055373 + B3 SINE B2 10 198 0 6 1443 1228 223 93 27 chr3 112544419 112544751 -47055032 + MTC LTR MaLR 68 421 0 6 1443 228 273 0 0 chr3 112545862 112545917 -47053866 - PB1D10 SINE Alu -10 107 53 6 1443 1011 250 13 4 chr3 112546509 112546738 -47053045 + L1_Mur3 LINE L1 86 316 -7396 6 1443 4895 134 7 1 chr3 112546896 112547665 -47052118 - L1_Mus3 LINE L1 0 6638 5866 6 1443 1316 59 0 0 chr3 112547665 112547835 -47051948 + L1_Mus3 LINE L1 5719 5888 -750 6 1443 491 236 8 8 chr3 112547840 112547968 -47051815 + Lx7 LINE L1 7567 7694 -2 6 1443 398 315 0 0 chr3 112549176 112549284 -47050499 + MT2A LTR ERVL 36 143 -390 6 1443 335 331 76 58 chr3 112549426 112549702 -47050081 + MT2A LTR ERVL 178 458 -75 6 1443 267 103 0 0 chr3 112549702 112549741 -47050042 + (A)n Simple_repeat Simple_repeat 1 39 0 6 1443 2538 53 28 0 chr3 112549804 112550122 -47049661 + IAPLTR2b LTR ERVK 1 327 0 6 1443 30449 92 3 8 chr3 112550774 112555228 -47044555 + L1Md_F2 LINE L1 1150 5584 -299 7 1443 7068 91 2 6 chr3 112555231 112556218 -47043565 + L1Md_F2 LINE L1 5588 6570 -12 7 1443 568 296 6 55 chr3 112556219 112556401 -47043382 + B3 SINE B2 27 199 -17 7 1443 252 0 0 0 chr3 112556401 112556429 -47043354 + (TAAA)n Simple_repeat Simple_repeat 2 29 0 7 1443 23 0 0 0 chr3 112556509 112556532 -47043251 + AT_rich Low_complexity Low_complexity 1 23 0 7 1443 254 143 65 11 chr3 112557014 112557106 -47042677 + (TA)n Simple_repeat Simple_repeat 1 97 0 7 1443 449 305 19 92 chr3 112557178 112557196 -47042587 + B4A SINE B4 83 98 -194 7 1443 1994 149 22 0 chr3 112557196 112557512 -47042271 - ORR1A2 LTR MaLR 0 327 5 7 1443 3818 224 90 116 chr3 112557516 112559531 -47040252 - ORR1A2-int LTR MaLR 0 1963 1 7 1443 1888 162 22 0 chr3 112559531 112559851 -47039932 - ORR1A2 LTR MaLR 0 327 1 7 1443 449 305 19 92 chr3 112559851 112560032 -47039751 + B4A SINE B4 99 272 -20 7 1443 759 118 0 0 chr3 112560052 112560196 -47039587 + (TC)n Simple_repeat Simple_repeat 1 144 0 7 1443 386 39 19 0 chr3 112560665 112560717 -47039066 + (TAA)n Simple_repeat Simple_repeat 2 54 0 7 1443 3115 87 7 2 chr3 112561120 112561547 -47038236 - L1Md_F2 LINE L1 -13 6569 6141 7 1443 271 0 0 49 chr3 112561635 112561676 -47038107 + (TTTTTG)n Simple_repeat Simple_repeat 4 42 0 8 1443 2749 87 20 39 chr3 112562682 112563089 -47036694 - L1Md_F2 LINE L1 -12 6570 6172 8 1443 456 35 0 0 chr3 112563168 112563226 -47036557 + (CA)n Simple_repeat Simple_repeat 1 58 0 8 1443 222 179 0 0 chr3 112563227 112563283 -47036500 + GA-rich Low_complexity Low_complexity 1 56 0 8 1443 558 376 64 18 chr3 112563637 112564132 -47035651 + MLT1F LTR MaLR 3 563 -6 8 1443 912 101 173 7 chr3 112564362 112564512 -47035271 + B2_Mm2 SINE B2 2 176 -19 8 1443 240 338 129 18 chr3 112565923 112566086 -47033697 + B3A SINE B2 2 182 -16 8 1443 21 57 0 0 chr3 112566108 112566143 -47033640 + AT_rich Low_complexity Low_complexity 1 35 0 8 1443 271 278 70 30 chr3 112566366 112566466 -47033317 - ORR1E LTR MaLR 0 379 276 8 1443 506 368 35 10 chr3 112566477 112566680 -47033103 - ORR1E LTR MaLR -146 213 6 8 1443 489 34 0 0 chr3 112566881 112566940 -47032843 + (TA)n Simple_repeat Simple_repeat 2 60 0 8 1443 417 308 18 60 chr3 112567434 112567600 -47032183 + Lx8 LINE L1 7156 7314 -159 9 1443 717 12 0 0 chr3 112567633 112567715 -47032068 + (GA)n Simple_repeat Simple_repeat 1 82 0 9 1443 2109 284 45 30 chr3 112567903 112568643 -47031140 + Lx7 LINE L1 6739 7489 -207 9 1443 1076 89 7 7 chr3 112568643 112568790 -47030993 - B1_Mus2 SINE Alu 0 147 1 9 1443 624 163 36 120 chr3 112569288 112569455 -47030328 + RLTR45 LTR ERVK 1 153 -329 9 1443 1346 105 24 28 chr3 112569922 112570247 -47029536 + RLTR45 LTR ERVK 107 482 0 9 1443 22 0 0 0 chr3 112570455 112570477 -47029306 + AT_rich Low_complexity Low_complexity 1 22 0 9 1443 5897 75 21 12 chr3 112570662 112571463 -47028320 + RLTR13C2 LTR ERVK 1 808 0 9 1443 445 129 11 11 chr3 112573590 112573684 -47026099 + (TA)n Simple_repeat Simple_repeat 2 95 0 9 1443 388 307 84 21 chr3 112573717 112573860 -47025923 - B3A SINE B2 -46 152 1 9 1443 30192 103 8 10 chr3 112574104 112579486 -47020297 + L1Md_F2 LINE L1 259 5586 -297 9 1443 7536 75 0 2 chr3 112579486 112580495 -47019288 + L1Md_F2 LINE L1 5587 6582 0 9 1443 898 241 45 72 chr3 112580495 112580536 -47019247 + L1MD LINE L1 5616 5643 -599 1 1443 553 321 66 29 chr3 112580853 112581305 -47018478 - L1MC LINE L1 -3277 2869 2401 1 1443 836 200 114 18 chr3 112581502 112581721 -47018062 - Lx2B LINE L1 0 7000 6761 1 1443 318 87 0 0 chr3 112581860 112581906 -47017877 + (CAAAA)n Simple_repeat Simple_repeat 3 48 0 1 1443 3440 156 10 14 chr3 112582211 112582797 -47016986 - Lx2B LINE L1 -231 6769 6186 1 1443 570 54 0 0 chr3 112582799 112582873 -47016910 + (TC)n Simple_repeat Simple_repeat 2 75 0 1 1443 429 158 0 0 chr3 112582875 112582957 -47016826 + T-rich Low_complexity Low_complexity 1 82 0 1 1443 259 238 44 73 chr3 112582957 112583025 -47016758 + B1_Mus1 SINE Alu 14 79 -69 1 1443 1990 152 5 27 chr3 112583027 112583398 -47016385 - Lx2B LINE L1 -804 6196 5834 1 1443 230 250 0 19 chr3 112583398 112583451 -47016332 + ZP3AR Satellite Satellite 31 82 -130 1 1443 677 36 0 0 chr3 112583411 112583494 -47016289 + BC1_Mm scRNA scRNA 1 83 -69 1 1443 347 318 83 72 chr3 112583690 112584077 -47015706 + L1MC LINE L1 3815 4205 -1941 1 1443 26 30 0 0 chr3 112584131 112584164 -47015619 + AT_rich Low_complexity Low_complexity 1 33 0 1 1443 12187 160 5 5 chr3 112584222 112586409 -47013374 + L1_Mur1 LINE L1 2288 4475 -1411 1 1443 354 33 33 16 chr3 112586409 112586470 -47013313 + (TTTTTG)n Simple_repeat Simple_repeat 6 67 0 1 1443 1002 234 15 0 chr3 112588610 112588815 -47010968 + B3 SINE B2 3 210 -6 1 1443 435 103 0 75 chr3 112589789 112589883 -47009900 - L1Md_F2 LINE L1 -2 6580 6494 1 1443 1336 104 16 0 chr3 112589883 112590076 -47009707 + L1_Mus2 LINE L1 6370 6565 -1 1 1443 22 0 0 0 chr3 112590078 112590100 -47009683 + AT_rich Low_complexity Low_complexity 1 22 0 1 1443 196 113 0 54 chr3 112590347 112590403 -47009380 + (TTATA)n Simple_repeat Simple_repeat 2 54 0 1 1444 2418 213 8 12 chr3 112590863 112591352 -47008431 + Lx4A LINE L1 6571 7057 -1 1 1444 15843 83 9 8 chr3 112591371 112593738 -47006045 - L1Md_F2 LINE L1 -16 6566 4198 1 1444 180 0 0 0 chr3 112593738 112593758 -47006025 + (TA)n Simple_repeat Simple_repeat 1 20 0 1 1444 15843 90 5 6 chr3 112593758 112594283 -47005500 - L1Md_F2 LINE L1 -1686 4197 3672 1 1444 832 118 0 0 chr3 112594273 112594392 -47005391 - L1_Mur1 LINE L1 -331 5555 5437 1 1444 1520 189 0 0 chr3 112594420 112594690 -47005093 + L1Md_F LINE L1 283 552 -5967 1 1444 592 77 0 0 chr3 112594688 112594766 -47005017 - L1Md_F LINE L1 -5533 986 909 1 1444 503 157 36 0 chr3 112594764 112594847 -47004936 + L1VL1 LINE L1 248 333 -6089 1 1444 2544 91 8 11 chr3 112594825 112595193 -47004590 - L1Md_F LINE L1 -5581 938 572 1 1444 306 0 0 0 chr3 112596060 112596094 -47003689 + (CA)n Simple_repeat Simple_repeat 2 35 0 1 1444 26 64 0 0 chr3 112596924 112596971 -47002812 + AT_rich Low_complexity Low_complexity 1 47 0 1 1444 27 62 0 0 chr3 112597103 112597151 -47002632 + AT_rich Low_complexity Low_complexity 1 48 0 1 1444 21 36 0 0 chr3 112597199 112597227 -47002556 + AT_rich Low_complexity Low_complexity 1 28 0 1 1444 391 58 69 11 chr3 112597762 112597849 -47001934 + (TTTTG)n Simple_repeat Simple_repeat 3 94 0 1 1444 1089 63 28 0 chr3 112597862 112598005 -47001778 - B1_Mus1 SINE Alu -1 147 1 1 1444 192 200 0 0 chr3 112598879 112598924 -47000859 + T-rich Low_complexity Low_complexity 1 45 0 1 1444 2994 160 46 13 chr3 112599825 112600293 -46999490 + RLTR20A2 LTR ERVK 1 480 -98 1 1444 420 37 0 0 chr3 112600293 112600347 -46999436 + (TG)n Simple_repeat Simple_repeat 1 54 0 1 1444 2994 160 46 13 chr3 112600347 112600423 -46999360 + RLTR20A2 LTR ERVK 481 562 -16 1 1444 23 0 0 0 chr3 112601383 112601406 -46998377 + AT_rich Low_complexity Low_complexity 1 23 0 1 1444 249 33 0 0 chr3 112601485 112601515 -46998268 + (TC)n Simple_repeat Simple_repeat 2 31 0 1 1444 201 39 0 0 chr3 112601526 112601552 -46998231 + (TG)n Simple_repeat Simple_repeat 1 26 0 1 1444 768 271 10 35 chr3 112601554 112601753 -46998030 - B3A SINE B2 -17 199 6 1 1444 214 167 0 0 chr3 112602438 112602474 -46997309 + T-rich Low_complexity Low_complexity 5 40 0 1 1444 332 351 81 81 chr3 112602562 112602847 -46996936 + B4A SINE B4 3 287 -5 1 1444 321 349 144 11 chr3 112603727 112603901 -46995882 - MIRc SINE MIR -25 243 47 1 1444 239 290 132 49 chr3 112604212 112604477 -46995306 + LTR37A LTR ERV1 101 387 -39 1 1444 299 151 19 19 chr3 112604590 112604644 -46995139 + RMER15 LTR ERVL 11 64 -511 1 1444 2971 120 4 2 chr3 112605022 112605480 -46994303 - Lx2 LINE L1 -606 6391 5933 1 1444 297 0 0 0 chr3 112605758 112605791 -46993992 + (CA)n Simple_repeat Simple_repeat 2 34 0 1 1444 543 31 0 0 chr3 112605791 112605855 -46993928 + (GA)n Simple_repeat Simple_repeat 2 66 0 1 1444 199 366 0 0 chr3 112606531 112606602 -46993181 + MIRb SINE MIR 124 194 -74 1 1444 1549 231 185 38 chr3 112606715 112607191 -46992592 + RMER19B LTR ERVK 357 902 0 1 1444 1457 164 75 63 chr3 112607818 112608137 -46991646 - ORR1A2 LTR MaLR -4 323 1 1 1444 7425 166 81 61 chr3 112608137 112609750 -46990033 - ORR1A2-int LTR MaLR 0 1963 319 1 1444 371 154 62 25 chr3 112609748 112609828 -46989955 + ORR1A3-int LTR MaLR 234 316 -1647 1 1444 243 0 0 0 chr3 112610064 112610091 -46989692 + (CA)n Simple_repeat Simple_repeat 2 28 0 1 1444 279 0 0 0 chr3 112610091 112610121 -46989662 + (GA)n Simple_repeat Simple_repeat 2 32 0 1 1444 243 327 84 28 chr3 112610586 112610693 -46989090 + B3 SINE B2 51 163 -53 1 1444 474 18 0 0 chr3 112610693 112610748 -46989035 + (TA)n Simple_repeat Simple_repeat 1 55 0 1 1444 279 0 0 0 chr3 112610748 112610778 -46989005 + (GA)n Simple_repeat Simple_repeat 2 32 0 1 1444 324 70 0 0 chr3 112611869 112611912 -46987871 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 1 1444 540 0 0 0 chr3 112612786 112612846 -46986937 + (GA)n Simple_repeat Simple_repeat 1 60 0 1 1444 367 280 0 17 chr3 112612912 112613032 -46986751 + Lx7 LINE L1 7563 7680 -16 1 1444 8065 49 5 4 chr3 112613423 112614525 -46985258 - L1Md_F2 LINE L1 -8 6574 5469 1 1444 215 135 27 0 chr3 112614991 112615028 -46984755 + (TTG)n Simple_repeat Simple_repeat 2 39 0 1 1444 407 200 12 12 chr3 112615617 112615703 -46984080 + RMER19B LTR ERVK 811 896 -6 1 1444 2936 71 2 12 chr3 112616059 112616459 -46983324 + MTA_Mm LTR MaLR 1 396 0 1 1444 734 196 0 27 chr3 112616677 112616824 -46982959 + L1_Mur3 LINE L1 4456 4598 -1282 1 1444 881 289 78 17 chr3 112616841 112617170 -46982613 - MTD LTR MaLR -45 355 19 1 1444 324 176 0 0 chr3 112617419 112617487 -46982296 + (TA)n Simple_repeat Simple_repeat 2 69 0 1 1444 488 278 36 24 chr3 112617500 112617666 -46982117 - Lx7 LINE L1 -426 7270 7103 1 1444 793 0 21 0 chr3 112617762 112617859 -46981924 + (TAGA)n Simple_repeat Simple_repeat 2 100 0 1 1444 251 336 39 8 chr3 112618010 112618139 -46981644 + B1F SINE Alu 3 135 -14 1 1444 29 47 0 0 chr3 112618953 112618996 -46980787 + AT_rich Low_complexity Low_complexity 1 43 0 1 1444 522 0 0 0 chr3 112619196 112619254 -46980529 + (TA)n Simple_repeat Simple_repeat 2 59 0 1 1444 1639 215 41 55 chr3 112619646 112620010 -46979773 - ORR1B2 LTR MaLR -8 359 1 1 1444 3577 183 50 5 chr3 112620251 112620911 -46978872 - RLTR17 LTR ERVK -2 690 1 1 1444 263 261 82 24 chr3 112621690 112621852 -46977931 - L1M2 LINE L1 -1515 4365 4228 1 1444 266 193 5 18 chr3 112621842 112621929 -46977854 + L1M5 LINE L1 4092 4178 -1968 1 1444 424 311 16 60 chr3 112621979 112622345 -46977438 - L1M2 LINE L1 -2068 4072 3723 1 1444 1197 58 0 0 chr3 112622430 112622584 -46977199 + (TC)n Simple_repeat Simple_repeat 2 155 0 1 1444 2158 93 13 13 chr3 112622986 112623303 -46976480 - L1Md_F2 LINE L1 -12 6570 6254 1 1444 434 333 116 20 chr3 112623473 112624320 -46975463 - L1M2 LINE L1 -3114 3029 2099 1 1444 267 54 0 0 chr3 112625192 112625229 -46974554 + (TTTG)n Simple_repeat Simple_repeat 4 40 0 1 1444 25 51 0 0 chr3 112626793 112626832 -46972951 + AT_rich Low_complexity Low_complexity 1 39 0 1 1444 448 300 133 32 chr3 112627102 112627350 -46972433 - MER20B DNA MER1_type -428 355 83 1 1444 255 61 0 0 chr3 112627578 112627611 -46972172 + (CA)n Simple_repeat Simple_repeat 2 34 0 1 1444 207 0 0 0 chr3 112627657 112627680 -46972103 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 1444 531 45 0 0 chr3 112627786 112627852 -46971931 + (TAGA)n Simple_repeat Simple_repeat 1 66 0 1 1444 254 388 53 15 chr3 112627980 112628111 -46971672 + RMER15 LTR ERVL 284 419 -156 1 1444 22 56 0 0 chr3 112628555 112628591 -46971192 + AT_rich Low_complexity Low_complexity 1 36 0 1 1444 227 371 67 0 chr3 112628852 112628892 -46970891 - MER5A DNA MER1_type -9 180 136 1 1444 243 0 0 0 chr3 112628892 112628919 -46970864 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 1444 227 371 67 0 chr3 112628919 112628967 -46970816 - MER5A DNA MER1_type -54 135 87 1 1444 246 315 145 14 chr3 112629281 112629426 -46970357 - MER5B DNA MER1_type -13 165 2 1 1444 494 263 14 91 chr3 112629680 112629889 -46969894 - B3A SINE B2 -4 194 2 1 1444 486 220 30 0 chr3 112631384 112631484 -46968299 - Lx3B LINE L1 -3 6970 6868 1 1444 2226 121 9 0 chr3 112631479 112631826 -46967957 + L1_Mur1 LINE L1 4303 4652 -1234 1 1444 251 279 38 0 chr3 112632057 112632136 -46967647 + Tigger7 DNA MER2_type 2377 2458 -33 1 1444 250 147 0 68 chr3 112632395 112632468 -46967315 + A-rich Low_complexity Low_complexity 1 68 0 1 1444 3160 207 40 4 chr3 112632570 112633265 -46966518 - RMER6D LTR ERVK 0 720 1 1 1444 22 56 0 0 chr3 112633780 112633816 -46965967 + AT_rich Low_complexity Low_complexity 1 36 0 1 1444 265 333 0 30 chr3 112633926 112634090 -46965693 + (CATATA)n Simple_repeat Simple_repeat 2 160 0 1 1444 955 312 75 92 chr3 112634170 112634385 -46965398 - L1_Mus1 LINE L1 0 7008 6838 1 1444 285 29 0 0 chr3 112634385 112634419 -46965364 + (TA)n Simple_repeat Simple_repeat 1 34 0 1 1444 330 26 0 0 chr3 112634419 112634457 -46965326 + (GA)n Simple_repeat Simple_repeat 2 40 0 1 1444 6918 58 3 4 chr3 112634457 112635330 -46964453 - L1_Mus1 LINE L1 -171 6837 5588 1 1444 4411 111 9 5 chr3 112635337 112636004 -46963779 + L1_Mus1 LINE L1 4925 5594 -289 1 1444 180 111 0 0 chr3 112636613 112636640 -46963143 + (GAA)n Simple_repeat Simple_repeat 2 28 0 1 1444 37919 30 0 0 chr3 112636924 112643398 -46956385 - L1Md_T LINE L1 0 6585 14 1 1444 25120 47 2 3 chr3 112643684 112646846 -46952937 + L1Md_F3 LINE L1 2430 5585 -298 2 1444 7560 55 14 1 chr3 112646847 112647818 -46951965 + L1Md_F3 LINE L1 5587 6570 -14 2 1444 282 29 0 0 chr3 112648068 112648103 -46951680 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 2 1444 1032 82 0 0 chr3 112648104 112648239 -46951544 - B1_Mus2 SINE Alu -12 135 1 2 1444 29 28 0 0 chr3 112648241 112648277 -46951506 + AT_rich Low_complexity Low_complexity 1 36 0 2 1444 240 401 51 46 chr3 112648670 112648887 -46950896 + MLT-int LTR MaLR 869 1086 -649 2 1444 441 350 51 18 chr3 112650012 112650296 -46949487 - MLT1C LTR MaLR -20 447 168 2 1444 537 106 19 9 chr3 112650668 112650773 -46949010 + (TTCC)n Simple_repeat Simple_repeat 3 108 0 2 1444 504 303 58 19 chr3 112650924 112651079 -46948704 + RSINE1 SINE B4 5 165 0 2 1444 319 189 39 0 chr3 112651104 112651231 -46948552 + (CA)n Simple_repeat Simple_repeat 1 132 0 2 1444 222 118 0 0 chr3 112651292 112651326 -46948457 + (CATA)n Simple_repeat Simple_repeat 4 37 0 2 1444 486 61 0 0 chr3 112651372 112651438 -46948345 + (TC)n Simple_repeat Simple_repeat 2 67 0 2 1444 360 77 0 0 chr3 112651438 112651490 -46948293 + (CA)n Simple_repeat Simple_repeat 1 52 0 2 1444 204 125 0 0 chr3 112652175 112652207 -46947576 + (TTA)n Simple_repeat Simple_repeat 2 33 0 2 1444 658 228 254 0 chr3 112652744 112652972 -46946811 - Lx9 LINE L1 -8 7636 7351 2 1444 365 200 0 0 chr3 112652994 112653064 -46946719 + Lx9 LINE L1 7256 7325 -319 2 1444 341 354 86 48 chr3 112653089 112653276 -46946507 + B4 SINE B4 3 196 -96 2 1444 23290 173 26 12 chr3 112653663 112659085 -46940698 - Lx LINE L1 -6 6648 1157 2 1444 812 47 0 0 chr3 112659086 112659192 -46940591 - B1_Mus2 SINE Alu 0 147 42 2 1444 277 111 0 53 chr3 112659144 112659201 -46940582 - 4.5SRNA scRNA scRNA -8 86 33 2 1444 365 119 0 33 chr3 112659244 112659305 -46940478 - B1_Mus1 SINE Alu -88 60 2 2 1444 195 129 0 0 chr3 112659305 112659336 -46940447 + (TATG)n Simple_repeat Simple_repeat 2 32 0 2 1444 867 306 62 22 chr3 112659742 112660066 -46939717 + Lx8 LINE L1 6817 7153 -320 2 1444 354 376 23 29 chr3 112660202 112660377 -46939406 + B3A SINE B2 1 174 -24 2 1444 26 0 0 0 chr3 112660523 112660549 -46939234 + AT_rich Low_complexity Low_complexity 1 26 0 2 1444 21 0 0 0 chr3 112660563 112660584 -46939199 + AT_rich Low_complexity Low_complexity 1 21 0 2 1444 1991 223 63 48 chr3 112660624 112660750 -46939033 + MT2A LTR ERVL 1 140 -393 2 1444 270 0 0 0 chr3 112660750 112660780 -46939003 + (TTAG)n Simple_repeat Simple_repeat 3 32 0 2 1444 1991 223 63 48 chr3 112660780 112660804 -46938979 + MT2A LTR ERVL 141 182 -351 2 1444 4039 169 49 7 chr3 112660804 112661561 -46938222 + Lx LINE L1 5862 6650 -4 2 1444 1991 223 63 48 chr3 112661561 112661896 -46937887 + MT2A LTR ERVL 183 496 -37 2 1444 477 76 0 0 chr3 112661896 112661962 -46937821 + (TA)n Simple_repeat Simple_repeat 1 66 0 2 1444 1991 223 63 48 chr3 112661962 112661997 -46937786 + MT2A LTR ERVL 497 531 -2 2 1444 434 297 79 23 chr3 112662389 112662603 -46937180 - L1MD LINE L1 -1924 4222 3997 2 1444 332 240 37 37 chr3 112662611 112662745 -46937038 - Lx7 LINE L1 0 7696 7563 2 1444 5750 235 25 9 chr3 112662739 112664483 -46935300 + Lx5 LINE L1 5268 7045 -5 2 1444 459 325 69 47 chr3 112664917 112665278 -46934505 - L1MEg LINE L1 -1701 4445 4077 2 1444 8374 29 0 0 chr3 112665279 112666438 -46933345 - L1Md_T LINE L1 -12 6570 5412 2 1444 9118 21 0 53 chr3 112666437 112667146 -46932637 + L1_Mm LINE L1 4288 4996 -887 2 1444 3788 20 0 2 chr3 112667146 112667587 -46932196 + L1Md_A LINE L1 6142 6581 -1 2 1444 9118 21 0 53 chr3 112667587 112668053 -46931730 + L1_Mm LINE L1 4997 5401 -482 2 1444 870 20 0 0 chr3 112668246 112668346 -46931437 - L1Md_F3 LINE L1 -147 6437 6338 2 1444 1223 64 0 0 chr3 112668346 112668538 -46931245 + L1Md_T LINE L1 6417 6582 0 2 1444 819 70 9 17 chr3 112668538 112668552 -46931231 - L1Md_F3 LINE L1 -245 6337 6324 2 1444 311 293 91 40 chr3 112668553 112668752 -46931031 - L1MEg LINE L1 -2282 3864 3656 2 1444 22 80 0 0 chr3 112668832 112668882 -46930901 + AT_rich Low_complexity Low_complexity 1 50 0 2 1444 309 272 24 12 chr3 112669397 112669479 -46930304 - L1MEg LINE L1 -5779 463 381 2 1444 330 321 91 4 chr3 112669774 112669888 -46929895 + B4A SINE B4 3 124 -168 2 1444 291 54 0 0 chr3 112669888 112669925 -46929858 + (CAGGA)n Simple_repeat Simple_repeat 3 39 0 2 1444 330 321 91 4 chr3 112669925 112670063 -46929720 + B4A SINE B4 125 276 -16 2 1444 3249 43 5 2 chr3 112670254 112670649 -46929134 + MTA_Mm LTR MaLR 1 396 0 2 1444 4601 64 11 6 chr3 112670649 112671280 -46928503 + MTA_Mm-int LTR MaLR 1 634 -464 2 1444 1777 28 5 0 chr3 112671264 112671478 -46928305 + MTA_Mm LTR MaLR 177 391 -5 2 1444 5290 27 1 0 chr3 112671479 112672295 -46927488 - L1Md_F2 LINE L1 -514 6068 5252 2 1444 8524 28 0 0 chr3 112672330 112673325 -46926458 - L1Md_A LINE L1 0 6582 5588 2 1444 597 293 0 20 chr3 112673527 112673677 -46926106 + B1_Mur3 SINE Alu 2 148 -1 2 1444 980 151 6 0 chr3 112673850 112674029 -46925754 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 2 1444 1149 66 27 18 chr3 112674093 112674428 -46925355 + (GGA)n Simple_repeat Simple_repeat 1 337 0 2 1444 939 109 0 0 chr3 112674430 112674577 -46925206 + (GAA)n Simple_repeat Simple_repeat 3 149 0 2 1444 202 200 0 0 chr3 112674780 112674820 -46924963 + (TCTG)n Simple_repeat Simple_repeat 4 43 0 2 1444 29 28 0 0 chr3 112675548 112675584 -46924199 + AT_rich Low_complexity Low_complexity 1 36 0 2 1444 23 54 0 0 chr3 112675774 112675811 -46923972 + AT_rich Low_complexity Low_complexity 1 37 0 2 1444 32 26 0 0 chr3 112676203 112676242 -46923541 + AT_rich Low_complexity Low_complexity 1 39 0 2 1444 15048 199 24 12 chr3 112676292 112679993 -46919790 + L1VL4 LINE L1 687 4502 -1384 2 1444 2079 86 10 131 chr3 112680232 112680620 -46919163 - L1_Mus2 LINE L1 -1 6565 6225 2 1444 510 96 0 0 chr3 112680800 112680873 -46918910 + (TTA)n Simple_repeat Simple_repeat 2 74 0 2 1444 700 330 6 0 chr3 112680891 112681064 -46918719 - B3 SINE B2 -42 174 1 2 1444 2115 200 27 17 chr3 112683033 112683507 -46916276 + L1_Mur2 LINE L1 3997 4475 -1402 2 1444 4209 257 32 6 chr3 112683515 112684502 -46915281 + Lx5 LINE L1 6038 7050 0 2 1444 183 222 0 0 chr3 112685072 112685117 -46914666 + (TATATG)n Simple_repeat Simple_repeat 3 47 0 2 1444 297 0 0 0 chr3 112685222 112685255 -46914528 + (CA)n Simple_repeat Simple_repeat 2 34 0 2 1444 25534 142 6 20 chr3 112685272 112689525 -46910258 - L1_Mus3 LINE L1 -6 6632 2462 2 1444 4285 68 2 2 chr3 112689525 112690085 -46909698 + L1Md_F2 LINE L1 6023 6582 0 2 1444 1515 37 0 0 chr3 112690087 112690274 -46909509 + L1Md_F2 LINE L1 6382 6568 -14 2 1444 25534 154 7 25 chr3 112690274 112691138 -46908645 - L1_Mus3 LINE L1 -3422 2461 1606 2 1444 4939 35 7 2 chr3 112691138 112691733 -46908050 - L1Md_F3 LINE L1 0 6584 5987 2 1444 25534 187 20 18 chr3 112691733 112692691 -46907092 - L1_Mus3 LINE L1 -4278 1605 634 2 1444 533 43 0 0 chr3 112693408 112693477 -46906306 + L1_Mus3 LINE L1 6313 6381 -257 2 1444 29 28 0 0 chr3 112693481 112693517 -46906266 + AT_rich Low_complexity Low_complexity 1 36 0 2 1444 309 296 108 38 chr3 112693530 112693688 -46906095 + MTEb LTR MaLR 110 278 -101 2 1444 225 186 0 0 chr3 112694168 112694238 -46905545 + T-rich Low_complexity Low_complexity 1 70 0 2 1444 1120 76 0 0 chr3 112694253 112694398 -46905385 - B1_Mus2 SINE Alu -2 145 1 2 1444 21 0 0 0 chr3 112694414 112694435 -46905348 + AT_rich Low_complexity Low_complexity 1 21 0 2 1444 243 354 0 10 chr3 112694510 112694610 -46905173 + Lx8 LINE L1 7024 7122 -351 2 1444 329 322 0 0 chr3 112694690 112694777 -46905006 + Lx8 LINE L1 7250 7336 -137 2 1444 4516 82 18 2 chr3 112694863 112694938 -46904845 - L1_Mus3 LINE L1 0 6638 6625 2 1444 1072 115 0 7 chr3 112694938 112695087 -46904696 - B1_Mus1 SINE Alu 0 148 1 2 1444 4516 82 18 2 chr3 112695087 112695693 -46904090 - L1_Mus3 LINE L1 -14 6624 6009 2 1444 231 42 41 20 chr3 112695733 112695782 -46904001 + Lx8 LINE L1 7423 7472 -1 2 1444 1061 103 0 0 chr3 112696054 112696209 -46903574 - L1_Mm LINE L1 -1470 4413 4259 2 1444 2705 78 0 14 chr3 112696209 112696572 -46903211 + L1_Mus1 LINE L1 6209 6566 -1 2 1444 1062 144 0 0 chr3 112696644 112696824 -46902959 + (GAA)n Simple_repeat Simple_repeat 1 180 0 2 1444 2902 215 28 16 chr3 112697307 112697946 -46901837 - Lx2B LINE L1 -5 6995 6349 2 1444 3107 59 3 3 chr3 112699021 112699413 -46900370 - MTA_Mm LTR MaLR 0 396 5 2 1444 231 42 20 59 chr3 112700088 112700139 -46899644 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 2 1444 185 204 23 0 chr3 112700217 112700261 -46899522 - L2 LINE L2 -1217 2202 2158 2 1444 378 0 0 0 chr3 112700345 112700387 -46899396 + (TG)n Simple_repeat Simple_repeat 2 43 0 2 1444 1260 89 44 0 chr3 112700476 112700656 -46899127 - B2_Mm1a SINE B2 -5 188 1 2 1444 291 54 0 0 chr3 112700699 112700736 -46899047 + (TA)n Simple_repeat Simple_repeat 2 38 0 2 1444 2918 122 31 4 chr3 112700736 112701187 -46898596 + ORR1A2-int LTR MaLR 1501 1963 0 2 1444 1999 145 31 0 chr3 112701187 112701504 -46898279 + ORR1A2 LTR MaLR 1 327 0 2 1444 317 345 67 38 chr3 112701875 112702113 -46897670 + L1MD LINE L1 5051 5295 -851 2 1444 521 179 0 18 chr3 112703137 112703251 -46896532 + GA-rich Low_complexity Low_complexity 2 113 0 2 1444 843 291 97 18 chr3 112703301 112703682 -46896101 + Lx9 LINE L1 7058 7468 -176 2 1444 480 18 0 0 chr3 112704362 112704419 -46895364 + (TG)n Simple_repeat Simple_repeat 1 57 0 2 1444 393 268 26 42 chr3 112704977 112705168 -46894615 - Lx9 LINE L1 -8 7636 7449 2 1444 3011 96 0 0 chr3 112705249 112705665 -46894118 - L1_Mus1 LINE L1 -273 5610 5195 2 1444 7605 56 11 1 chr3 112705665 112706625 -46893158 + L1_Mus1 LINE L1 5597 6566 -1 2 1444 4937 148 69 11 chr3 112708288 112709199 -46890584 - Lx3B LINE L1 0 6973 6010 2 1444 33 90 0 0 chr3 112709346 112709435 -46890348 + AT_rich Low_complexity Low_complexity 1 89 0 2 1444 1146 56 14 0 chr3 112710514 112710658 -46889125 + B1_Mus1 SINE Alu 3 148 0 2 1444 22 0 0 0 chr3 112710934 112710956 -46888827 + AT_rich Low_complexity Low_complexity 1 22 0 2 1444 4452 78 0 24 chr3 112711091 112711719 -46888064 - L1Md_F2 LINE L1 -3 6579 5967 2 1444 3479 75 0 2 chr3 112711719 112712189 -46887594 + L1_Mm LINE L1 2416 2884 -2999 2 1444 26 30 0 0 chr3 112712291 112712324 -46887459 + AT_rich Low_complexity Low_complexity 1 33 0 2 1444 184 200 39 20 chr3 112713063 112713114 -46886669 + L4 LINE RTE 991 1042 -987 2 1444 2669 274 105 25 chr3 112713231 112714077 -46885706 + ORR1C2-int LTR MaLR 5 918 -452 3 1444 1139 184 142 15 chr3 112714110 112714370 -46885413 + ORR1C2 LTR MaLR 92 384 0 3 1444 676 288 16 0 chr3 112714522 112714713 -46885070 - Lx7 LINE L1 -1370 6326 6133 3 1444 719 142 0 7 chr3 112715557 112715706 -46884077 + (GGGAGA)n Simple_repeat Simple_repeat 3 150 0 3 1444 1412 207 64 56 chr3 112715744 112715937 -46883846 + ORR1C1 LTR MaLR 1 177 -201 3 1444 414 0 0 0 chr3 112715937 112715983 -46883800 + (TC)n Simple_repeat Simple_repeat 1 46 0 3 1444 1412 207 64 56 chr3 112715983 112716162 -46883621 + ORR1C1 LTR MaLR 178 375 -3 3 1444 1753 150 52 0 chr3 112716338 112716625 -46883158 - Lx2 LINE L1 0 6997 6696 3 1444 4436 12 0 0 chr3 112716683 112717176 -46882607 - MT2_Mm LTR ERVL 0 493 1 3 1444 314 0 0 0 chr3 112717176 112717214 -46882569 - MERVL-int LTR ERVL 0 5485 5448 3 1444 392 167 46 35 chr3 112717214 112717301 -46882482 - ORR1A3-int LTR MaLR -1323 640 553 3 180 47244 17 0 0 chr3 112717301 112722661 -46877122 - MERVL-int LTR ERVL -125 5360 1 3 1445 3710 14 121 0 chr3 112722661 112723101 -46876682 - MT2_Mm LTR ERVL 0 493 1 3 1445 3939 103 7 2 chr3 112723101 112723653 -46876130 - Lx2 LINE L1 -318 6679 6125 3 1445 473 321 80 5 chr3 112723886 112724074 -46875709 - B3 SINE B2 -14 202 1 3 1445 23 33 0 0 chr3 112724076 112724106 -46875677 + AT_rich Low_complexity Low_complexity 1 30 0 3 1445 2083 93 0 66 chr3 112724233 112724568 -46875215 + L1Md_F2 LINE L1 6258 6570 -12 3 1445 252 59 0 0 chr3 112724678 112724712 -46875071 + (TATG)n Simple_repeat Simple_repeat 2 35 0 3 1445 4191 92 14 28 chr3 112724804 112725446 -46874337 + Lx3_Mus LINE L1 5548 6186 -823 3 1445 486 327 27 0 chr3 112725724 112725874 -46873909 + RSINE1 SINE B4 8 161 -4 3 1445 538 342 68 72 chr3 112726419 112726712 -46873071 + B4A SINE B4 1 292 0 3 1445 204 97 0 0 chr3 112727064 112727095 -46872688 + (TG)n Simple_repeat Simple_repeat 2 32 0 3 1445 276 287 75 42 chr3 112727121 112727241 -46872542 - B2_Mm2 SINE B2 -71 124 1 3 1445 1112 242 53 48 chr3 112727243 112727660 -46872123 - MTD LTR MaLR 0 419 1 3 1445 204 160 78 20 chr3 112728891 112728993 -46870790 + (TA)n Simple_repeat Simple_repeat 1 108 0 3 1445 257 193 59 46 chr3 112729382 112729458 -46870325 + MIRc SINE MIR 63 141 -127 3 1445 21 0 0 0 chr3 112729615 112729636 -46870147 + AT_rich Low_complexity Low_complexity 1 21 0 3 1445 321 217 28 19 chr3 112729660 112729768 -46870015 + (TA)n Simple_repeat Simple_repeat 1 109 0 3 1445 49 71 0 0 chr3 112729833 112729931 -46869852 + AT_rich Low_complexity Low_complexity 1 98 0 3 1445 385 370 43 43 chr3 112730233 112730397 -46869386 + B4 SINE B4 40 203 -89 3 1445 400 291 48 10 chr3 112730420 112730524 -46869259 + B4A SINE B4 1 108 -184 3 1445 23 0 0 0 chr3 112730587 112730610 -46869173 + AT_rich Low_complexity Low_complexity 1 23 0 3 1445 5280 92 11 3 chr3 112732330 112733074 -46866709 + Lx3_Mus LINE L1 6223 6972 -37 3 1445 712 286 35 5 chr3 112733142 112733342 -46866441 + B3 SINE B2 3 208 -8 3 1445 492 32 0 0 chr3 112733498 112733560 -46866223 + (TAGA)n Simple_repeat Simple_repeat 4 65 0 3 1445 468 0 0 0 chr3 112733572 112733624 -46866159 + (TG)n Simple_repeat Simple_repeat 1 52 0 3 1445 274 219 184 16 chr3 112733637 112733762 -46866021 + Lx6 LINE L1 7288 7433 -27 3 1445 628 273 131 48 chr3 112733911 112734623 -46865160 + L1MC1 LINE L1 5071 5845 -488 3 1445 186 71 0 0 chr3 112734994 112735022 -46864761 + (TGAA)n Simple_repeat Simple_repeat 3 30 0 3 1445 546 287 107 32 chr3 112735716 112735903 -46863880 + MTD LTR MaLR 1 201 -218 3 1445 455 181 167 77 chr3 112735913 112736069 -46863714 - Lx4B LINE L1 -909 6149 5980 3 1445 4578 193 29 7 chr3 112736069 112736987 -46862796 + Lx4B LINE L1 6116 7054 -4 3 1445 24 91 0 0 chr3 112737054 112737120 -46862663 + AT_rich Low_complexity Low_complexity 1 66 0 3 1445 646 281 74 23 chr3 112737154 112737369 -46862414 + MTD LTR MaLR 194 419 0 3 1445 2209 209 72 10 chr3 112737961 112738444 -46861339 - RLTR11A2 LTR ERVK -11 516 4 3 1445 534 257 61 52 chr3 112738449 112738716 -46861067 - MYSERV16_I-int LTR ERVK 0 2326 2092 3 1445 5148 238 88 78 chr3 112739294 112739847 -46859936 - MYSERV16_I-int LTR ERVK -241 2085 1521 3 1445 369 0 0 0 chr3 112739847 112739888 -46859895 + (TCTA)n Simple_repeat Simple_repeat 1 41 0 3 1445 5148 238 88 78 chr3 112739888 112740063 -46859720 - MYSERV16_I-int LTR ERVK -806 1520 1304 3 1445 186 71 0 0 chr3 112740063 112740091 -46859692 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 3 1445 828 146 0 0 chr3 112740092 112740222 -46859561 - B1_Mus1 SINE Alu -18 130 1 3 1445 5148 238 88 78 chr3 112740222 112741541 -46858242 - MYSERV16_I-int LTR ERVK -1023 1303 15 3 1445 306 229 85 71 chr3 112741892 112742033 -46857750 - MYSERV6-int LTR ERVK -2285 6674 6532 3 1445 296 296 3 0 chr3 112742247 112742315 -46857468 - B1_Mus2 SINE Alu -48 100 31 3 1445 459 0 0 0 chr3 112742661 112742712 -46857071 + (CA)n Simple_repeat Simple_repeat 2 52 0 3 1445 2470 203 17 27 chr3 112742798 112743319 -46856464 - RLTR11A2 LTR ERVK -11 516 1 3 1445 1276 81 26 16 chr3 112743422 112743579 -46856204 + B2_Mm1t SINE B2 1 158 -35 3 1445 369 0 0 0 chr3 112743579 112743620 -46856163 + (TAAA)n Simple_repeat Simple_repeat 4 44 0 3 1445 1276 81 26 16 chr3 112743620 112743651 -46856132 + B2_Mm1t SINE B2 159 191 -2 3 1445 185 0 40 0 chr3 112745513 112745538 -46854245 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 3 1445 1426 111 0 83 chr3 112745539 112745804 -46853979 - Lx3A LINE L1 -14 6967 6725 3 1445 2888 142 39 15 chr3 112746722 112747256 -46852527 + Lx2 LINE L1 5744 6290 -707 3 1445 213 39 0 0 chr3 112747506 112747532 -46852251 + (A)n Simple_repeat Simple_repeat 1 26 0 3 1445 252 0 0 0 chr3 112747532 112747560 -46852223 + (GGAA)n Simple_repeat Simple_repeat 2 29 0 3 1445 1314 82 0 0 chr3 112748877 112749059 -46850724 - MusHAL1 LINE L1 -819 1893 1712 3 1445 1224 80 29 0 chr3 112749059 112749234 -46850549 + L1_Mus2 LINE L1 6387 6566 0 3 1445 204 97 0 0 chr3 112749398 112749429 -46850354 + (TG)n Simple_repeat Simple_repeat 2 32 0 3 1445 417 109 0 0 chr3 112749916 112749980 -46849803 + (TC)n Simple_repeat Simple_repeat 2 65 0 3 1445 486 314 21 35 chr3 112750094 112750236 -46849547 - RSINE1 SINE B4 -22 143 4 3 1445 414 0 0 0 chr3 112750756 112750802 -46848981 + (GA)n Simple_repeat Simple_repeat 1 46 0 3 1445 2353 67 0 0 chr3 112751326 112751623 -46848160 + L1_Mus2 LINE L1 6264 6560 -6 3 1445 1058 116 5 0 chr3 112751624 112751848 -46847935 + (GAA)n Simple_repeat Simple_repeat 1 225 0 3 1445 1421 55 0 0 chr3 112751927 112752109 -46847674 + L1_Mus1 LINE L1 6385 6566 -1 3 1445 483 18 0 0 chr3 112752112 112752168 -46847615 + (GAAA)n Simple_repeat Simple_repeat 2 57 0 3 1445 450 53 0 0 chr3 112752278 112752335 -46847448 + (CATA)n Simple_repeat Simple_repeat 4 60 0 3 1445 222 268 14 27 chr3 112752656 112752729 -46847054 + (AAATG)n Simple_repeat Simple_repeat 5 76 0 3 1445 223 231 19 0 chr3 112752657 112752709 -46847074 + A-rich Low_complexity Low_complexity 3 55 0 3 1445 32 26 0 0 chr3 112752930 112752969 -46846814 + AT_rich Low_complexity Low_complexity 1 39 0 3 1445 817 163 13 20 chr3 112752996 112753146 -46846637 + B1_Mur4 SINE Alu 1 149 -1 3 1445 21 0 0 0 chr3 112753752 112753773 -46846010 + AT_rich Low_complexity Low_complexity 1 21 0 3 1445 385 349 102 30 chr3 112753865 112754101 -46845682 + MLT1C LTR MaLR 62 314 -153 3 1445 2459 53 3 48 chr3 112754550 112754887 -46844896 - RLTRETN_Mm LTR ERVK 0 322 1 3 1445 2730 96 5 27 chr3 112754887 112755292 -46844491 - MMETn-int LTR ERVK 0 4844 4449 3 1445 632 73 10 0 chr3 112755292 112755388 -46844395 - RLTRETN_Mm LTR ERVK -225 97 1 3 1445 304 330 16 50 chr3 112755710 112755831 -46843952 + PB1D10 SINE Alu 1 117 0 3 1445 340 229 57 16 chr3 112757669 112757793 -46841990 + Lx9 LINE L1 7448 7576 -68 3 1445 22 35 0 0 chr3 112757808 112757837 -46841946 + AT_rich Low_complexity Low_complexity 1 29 0 3 1445 1153 254 105 31 chr3 112757934 112758353 -46841430 + Lx2B LINE L1 6516 6965 -35 3 1445 423 0 0 0 chr3 112758354 112758401 -46841382 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 3 1445 275 342 98 35 chr3 112758405 112758720 -46841063 + LTR37B LTR ERV1 126 460 -8 3 1445 1075 301 71 40 chr3 112759390 112760124 -46839659 + L1M3 LINE L1 3429 4182 -1961 3 1445 368 321 105 51 chr3 112760124 112760400 -46839383 + B4A SINE B4 2 292 0 3 1445 633 321 67 68 chr3 112760400 112760473 -46839310 + L1M3 LINE L1 4169 4238 -1908 3 1445 269 341 53 23 chr3 112760486 112760618 -46839165 + B1_Mur1 SINE Alu 13 148 -1 3 1445 612 99 22 0 chr3 112760917 112761008 -46838775 + PB1D9 SINE Alu 26 118 -2 3 1445 356 283 147 26 chr3 112761008 112761073 -46838710 + B4 SINE B4 111 285 -7 3 1445 389 154 0 49 chr3 112761079 112761161 -46838622 - Lx7 LINE L1 -99 7597 7520 3 1445 521 292 56 20 chr3 112761172 112761368 -46838415 - MTC LTR MaLR -218 203 1 3 1445 247 281 16 0 chr3 112761368 112761432 -46838351 - MTC-int LTR MaLR 0 1258 1194 3 1445 6664 256 36 26 chr3 112761502 112763298 -46836485 - Lx6 LINE L1 -1 7459 5646 3 1445 4141 114 19 22 chr3 112763296 112764033 -46835750 - Lx3A LINE L1 -699 6282 5543 3 1445 986 109 138 0 chr3 112764032 112764206 -46835577 + L1_Mur1 LINE L1 3980 4177 -1709 3 1445 3115 155 73 0 chr3 112764207 112764767 -46835016 - Lx2 LINE L1 -202 6795 6195 3 1445 237 297 32 32 chr3 112765222 112765316 -46834467 - L2a LINE L2 0 3426 3333 3 1445 15400 126 23 3 chr3 112765674 112769053 -46830730 + L1VL4 LINE L1 380 3854 -2289 3 1445 7016 133 11 8 chr3 112769044 112770851 -46828932 + L1_Mus4 LINE L1 4819 6630 -6 3 1445 196 385 0 9 chr3 112771060 112771165 -46828618 - L2 LINE L2 -773 2646 2543 3 1445 391 287 77 32 chr3 112771192 112771347 -46828436 + MLT1D LTR MaLR 49 210 -295 3 1445 239 276 19 19 chr3 112771423 112771530 -46828253 + MLT1D LTR MaLR 396 502 -3 3 1445 481 349 120 38 chr3 112772165 112772689 -46827094 - L2 LINE L2 -867 2552 1986 3 1445 270 313 15 0 chr3 112773218 112773285 -46826498 + ID4 SINE ID 14 81 -2 3 1445 222 347 124 0 chr3 112773315 112773436 -46826347 + MIRc SINE MIR 129 264 -4 3 1445 195 69 0 0 chr3 112774026 112774055 -46825728 + (TTTTTA)n Simple_repeat Simple_repeat 2 30 0 3 1445 1795 202 47 13 chr3 112774420 112774801 -46824982 - ORR1B1 LTR MaLR 0 394 1 3 1445 215 219 0 0 chr3 112774996 112775037 -46824746 + CT-rich Low_complexity Low_complexity 2 42 0 3 1445 239 224 224 0 chr3 112775268 112775326 -46824457 + MTE2b LTR MaLR 53 123 -256 3 1445 732 59 0 0 chr3 112775381 112775483 -46824300 + (TC)n Simple_repeat Simple_repeat 2 103 0 3 1445 386 301 0 0 chr3 112775505 112775587 -46824196 + MTE2b LTR MaLR 238 319 -60 3 1445 4712 173 62 70 chr3 112775587 112775740 -46824043 - RLTR25A LTR ERVK 0 1103 955 3 1445 1473 23 0 0 chr3 112775740 112775913 -46823870 + (TC)n Simple_repeat Simple_repeat 1 173 0 4 1445 4712 173 62 70 chr3 112775913 112776202 -46823581 - RLTR25A LTR ERVK -149 954 687 3 1445 2614 74 3 19 chr3 112776202 112776517 -46823266 - L1_Mus1 LINE L1 -1 6566 6252 4 1445 2109 127 7 0 chr3 112776517 112776824 -46822959 + RLTR27 LTR ERVK 1 309 0 4 1445 2614 74 3 19 chr3 112776824 112776868 -46822915 - L1_Mus1 LINE L1 -316 6251 6213 4 1445 4712 173 62 70 chr3 112776868 112776919 -46822864 - RLTR25A LTR ERVK -417 686 641 3 1445 2184 48 0 0 chr3 112776919 112777188 -46822595 - L1Md_T LINE L1 0 6582 6314 4 1445 4712 173 62 70 chr3 112777188 112777469 -46822314 - RLTR25A LTR ERVK -463 640 347 3 1445 608 0 14 0 chr3 112777469 112777541 -46822242 + (GA)n Simple_repeat Simple_repeat 2 74 0 4 1445 4712 173 62 70 chr3 112777541 112777875 -46821908 - RLTR25A LTR ERVK -757 346 1 3 1445 365 365 25 12 chr3 112777930 112778091 -46821692 + MTE-int LTR MaLR 2 164 -1416 4 1445 344 325 17 0 chr3 112778107 112778224 -46821559 + MTE-int LTR MaLR 299 417 -1163 4 1445 578 219 29 6 chr3 112778240 112778372 -46821411 - Lx9 LINE L1 0 7644 7512 4 1445 2394 108 196 0 chr3 112778372 112778817 -46820966 + RLTR47_MM LTR ERV1 1 532 0 4 1445 578 219 29 6 chr3 112778817 112778854 -46820929 - Lx9 LINE L1 -133 7511 7471 4 1445 6860 53 2 3 chr3 112779345 112780201 -46819582 + RLTR13A LTR ERVK 1 855 0 4 1445 1397 177 79 62 chr3 112780336 112780739 -46819044 - RMER17C LTR ERVK 0 410 1 4 1445 1712 337 61 93 chr3 112780807 112781713 -46818070 + MTE-int LTR MaLR 609 1485 -95 4 1445 1407 157 18 44 chr3 112781764 112782037 -46817746 + Lx2B LINE L1 6728 6993 -7 4 1445 5167 168 5 3 chr3 112782053 112782990 -46816793 - Lx5 LINE L1 -293 5584 4646 4 1445 3231 206 72 25 chr3 112782995 112783741 -46816042 + Lx5 LINE L1 5587 6367 -683 4 1445 1017 247 9 19 chr3 112783737 112783988 -46815795 + Lx5 LINE L1 6702 6910 -140 4 1445 23 0 0 0 chr3 112784028 112784051 -46815732 + AT_rich Low_complexity Low_complexity 1 23 0 4 1445 703 286 129 75 chr3 112784101 112784396 -46815387 + MTE2b LTR MaLR 21 331 -48 4 1445 200 196 0 0 chr3 112784531 112784577 -46815206 + T-rich Low_complexity Low_complexity 4 49 0 4 1445 735 203 0 47 chr3 112784648 112784798 -46814985 + Lx3C LINE L1 6825 6967 -9 4 1445 24 0 0 0 chr3 112784808 112784832 -46814951 + AT_rich Low_complexity Low_complexity 1 24 0 4 1445 666 37 0 0 chr3 112784843 112784924 -46814859 + (TA)n Simple_repeat Simple_repeat 1 81 0 4 1445 234 245 54 54 chr3 112786810 112786922 -46812861 + L1M4 LINE L1 1545 1656 -4886 4 1445 246 156 0 0 chr3 112787353 112787398 -46812385 + (CATA)n Simple_repeat Simple_repeat 2 46 0 4 1445 21 0 0 0 chr3 112789131 112789152 -46810631 + AT_rich Low_complexity Low_complexity 1 21 0 4 1445 202 216 19 38 chr3 112789613 112789666 -46810117 + (CATA)n Simple_repeat Simple_repeat 4 55 0 4 1445 29 47 0 0 chr3 112789874 112789917 -46809866 + AT_rich Low_complexity Low_complexity 1 43 0 4 1445 7674 61 1 2 chr3 112789943 112790923 -46808860 + L1Md_F2 LINE L1 4608 5586 -297 4 1445 8084 46 0 3 chr3 112790924 112791952 -46807831 + L1Md_F2 LINE L1 5588 6582 0 4 1445 238 310 128 73 chr3 112792274 112792493 -46807290 + MLT1B LTR MaLR 6 236 -154 4 1445 442 343 65 12 chr3 112792720 112792968 -46806815 - MLT1B LTR MaLR -35 355 95 4 1445 1652 61 5 5 chr3 112793317 112793531 -46806252 - L1_Mus1 LINE L1 -395 6172 5959 4 1445 1379 65 5 0 chr3 112793531 112793717 -46806066 + L1_Mus1 LINE L1 6379 6565 -2 4 1445 1231 283 30 22 chr3 112793810 112794175 -46805608 - MTEb LTR MaLR -11 368 1 4 1445 5144 138 17 5 chr3 112794968 112795786 -46803997 + Lx2 LINE L1 6168 6995 -2 4 1445 22 0 0 0 chr3 112796208 112796230 -46803553 + AT_rich Low_complexity Low_complexity 1 22 0 4 1445 483 284 24 17 chr3 112797625 112797789 -46801994 + MLT2B4 LTR ERVL 66 231 -284 4 1445 4204 144 41 7 chr3 112798049 112798753 -46801030 + Lx2 LINE L1 6269 6996 -1 4 1445 233 228 0 0 chr3 112798754 112798811 -46800972 + A-rich Low_complexity Low_complexity 1 57 0 4 1445 22 35 0 0 chr3 112798903 112798932 -46800851 + AT_rich Low_complexity Low_complexity 1 29 0 4 1445 21 0 0 0 chr3 112798953 112798974 -46800809 + AT_rich Low_complexity Low_complexity 1 21 0 4 1445 807 96 22 0 chr3 112798977 112799113 -46800670 + (TTTC)n Simple_repeat Simple_repeat 1 139 0 4 1445 1037 93 14 0 chr3 112799115 112799254 -46800529 - B1_Mus1 SINE Alu -6 142 2 4 1445 37 39 0 0 chr3 112799254 112799305 -46800478 + AT_rich Low_complexity Low_complexity 1 51 0 4 1445 1302 230 181 60 chr3 112799327 112800135 -46799648 + RMER6C LTR ERVK 1 720 0 4 1445 487 208 0 47 chr3 112800138 112800231 -46799552 + B1_Mur4 SINE Alu 50 139 -11 4 1445 667 11 35 0 chr3 112800231 112800318 -46799465 + (GAAAA)n Simple_repeat Simple_repeat 2 91 0 4 1445 2274 84 3 6 chr3 112800318 112800631 -46799152 + L1Md_F2 LINE L1 6269 6580 -2 4 1445 487 208 0 47 chr3 112800631 112800642 -46799141 + B1_Mur4 SINE Alu 140 149 -1 4 1445 369 43 0 0 chr3 112800711 112800758 -46799025 + (TC)n Simple_repeat Simple_repeat 2 48 0 4 1445 840 157 0 0 chr3 112800758 112800905 -46798878 + (CATATA)n Simple_repeat Simple_repeat 2 148 0 4 1445 26 30 0 0 chr3 112800966 112800999 -46798784 + AT_rich Low_complexity Low_complexity 1 33 0 4 1445 22 0 0 0 chr3 112801771 112801793 -46797990 + AT_rich Low_complexity Low_complexity 1 22 0 4 1445 270 160 0 0 chr3 112801911 112801961 -46797822 + T-rich Low_complexity Low_complexity 1 50 0 4 1445 671 285 85 15 chr3 112803005 112803265 -46796518 + Lx7 LINE L1 7042 7319 -377 4 1445 285 197 0 0 chr3 112803295 112803371 -46796412 + T-rich Low_complexity Low_complexity 1 76 0 4 1445 24 32 0 0 chr3 112803451 112803482 -46796301 + AT_rich Low_complexity Low_complexity 1 31 0 4 1445 21 57 0 0 chr3 112803836 112803871 -46795912 + AT_rich Low_complexity Low_complexity 1 35 0 4 1445 31195 93 11 37 chr3 112805391 112810393 -46789390 + Lx2 LINE L1 590 5587 -296 4 1445 7556 70 2 5 chr3 112810393 112811390 -46788393 + L1Md_F2 LINE L1 5589 6582 0 4 1445 31195 119 7 15 chr3 112811390 112812580 -46787203 + Lx2 LINE L1 5588 6643 -354 4 1445 1296 166 0 0 chr3 112812580 112812797 -46786986 + Lx2 LINE L1 6775 6991 -6 4 1445 25 31 0 0 chr3 112812797 112812829 -46786954 + AT_rich Low_complexity Low_complexity 1 32 0 4 1445 1578 247 54 18 chr3 112813279 112813671 -46786112 - MTD LTR MaLR -13 406 1 4 1445 193 291 113 43 chr3 112814187 112814302 -46785481 - L2 LINE L2 -1287 2132 2010 4 1445 372 212 72 96 chr3 112814443 112814610 -46785173 - L1M3 LINE L1 -1726 4417 4252 4 1445 309 343 85 7 chr3 112815280 112815421 -46784362 - MLT1E LTR MaLR -33 620 469 4 1445 504 301 28 98 chr3 112816592 112816640 -46783143 - B3 SINE B2 -17 199 166 4 1445 216 67 0 0 chr3 112816640 112816670 -46783113 + (TG)n Simple_repeat Simple_repeat 1 30 0 4 1445 552 301 28 98 chr3 112816670 112816835 -46782948 - B3A SINE B2 -51 165 1 4 1445 459 202 0 0 chr3 112817034 112817133 -46782650 + (TA)n Simple_repeat Simple_repeat 1 99 0 4 1445 447 63 0 0 chr3 112818226 112818289 -46781494 + (TTAG)n Simple_repeat Simple_repeat 2 64 0 4 1445 3883 205 109 3 chr3 112818289 112819140 -46780643 - Lx4B LINE L1 -21 7037 6097 4 1445 279 79 0 0 chr3 112819160 112819198 -46780585 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 4 1445 320 263 44 58 chr3 112819205 112819431 -46780352 - Lx9 LINE L1 -3 7641 7419 4 1445 257 311 29 43 chr3 112819469 112819607 -46780176 - Lx9 LINE L1 -189 7455 7320 4 1445 376 204 16 115 chr3 112820885 112821007 -46778776 + B1_Mur1 SINE Alu 40 149 0 4 1445 293 296 70 5 chr3 112821262 112821455 -46778328 - L1M3 LINE L1 -1429 4711 4481 4 1445 230 214 86 0 chr3 112821752 112821822 -46777961 - L1M2 LINE L1 -1656 4487 4412 4 1445 286 318 47 0 chr3 112821822 112821951 -46777832 - Lx7 LINE L1 -1948 5748 5614 4 1445 1921 59 0 0 chr3 112822083 112822320 -46777463 - L1_Mus1 LINE L1 0 6567 6331 4 1445 294 291 105 0 chr3 112822512 112822598 -46777185 - B1_Mur1 SINE Alu -20 129 35 4 1445 351 0 0 0 chr3 112823266 112823305 -46776478 + (TTTTG)n Simple_repeat Simple_repeat 5 43 0 4 1445 252 0 0 0 chr3 112825478 112825506 -46774277 + (A)n Simple_repeat Simple_repeat 1 28 0 4 1445 1394 201 215 61 chr3 112825628 112826088 -46773695 + RMER20B LTR ERVK 30 560 -67 4 1445 306 231 0 71 chr3 112826151 112826235 -46773548 + RMER20B LTR ERVK 525 602 -25 4 1445 30 83 0 0 chr3 112826805 112826877 -46772906 + AT_rich Low_complexity Low_complexity 1 72 0 4 1445 480 234 19 9 chr3 112826970 112827078 -46772705 - B1F1 SINE Alu 0 149 41 4 1445 231 250 32 48 chr3 112827025 112827088 -46772695 - 4.5SRNA scRNA scRNA -6 88 27 4 1445 711 35 0 0 chr3 112827095 112827181 -46772602 + (TCCA)n Simple_repeat Simple_repeat 2 87 0 4 1445 461 198 0 9 chr3 112827187 112827299 -46772484 + CT-rich Low_complexity Low_complexity 1 111 0 4 1445 420 211 61 31 chr3 112827299 112827397 -46772386 - B1_Mur3 SINE Alu -7 142 42 4 1445 3521 102 13 21 chr3 112827438 112827967 -46771816 - L1_Mus3 LINE L1 -2 6636 6112 4 1445 3710 80 31 2 chr3 112827967 112828536 -46771247 + L1_Mus3 LINE L1 5525 6108 -530 4 1445 4002 68 9 6 chr3 112829174 112829703 -46770080 - L1_Mus3 LINE L1 -246 6321 5791 4 1445 1503 83 0 31 chr3 112829703 112829927 -46769856 + L1_Mus3 LINE L1 6351 6567 0 4 1445 23 0 0 0 chr3 112829978 112830001 -46769782 + AT_rich Low_complexity Low_complexity 1 23 0 4 1445 183 311 9 112 chr3 112830142 112830258 -46769525 + L2c LINE L2 3271 3374 -13 4 1445 806 137 0 0 chr3 112830288 112830419 -46769364 + L1_Mus2 LINE L1 6435 6565 -1 4 1445 204 167 24 0 chr3 112830438 112830480 -46769303 + A-rich Low_complexity Low_complexity 4 46 0 4 1445 3729 124 9 0 chr3 112830545 112831099 -46768684 - L1_Mus4 LINE L1 0 6636 6078 4 1445 452 70 0 0 chr3 112831099 112831156 -46768627 + L1_Mus4 LINE L1 5980 6036 -600 4 1445 3348 23 21 0 chr3 112831156 112831544 -46768239 - MTA_Mm LTR MaLR 0 396 1 4 1445 3110 38 3 0 chr3 112831544 112831936 -46767847 - MTA_Mm-int LTR MaLR 0 1098 706 4 1445 4334 59 0 0 chr3 112831936 112832463 -46767320 - MERVL-int LTR ERVL -519 4966 4440 4 1445 23 0 0 0 chr3 112833629 112833652 -46766131 + AT_rich Low_complexity Low_complexity 1 23 0 4 1445 1096 219 52 16 chr3 112833652 112833903 -46765880 + Lx5 LINE L1 6788 7047 -3 4 1445 510 17 0 0 chr3 112833911 112833970 -46765813 + (GA)n Simple_repeat Simple_repeat 1 59 0 4 1445 279 0 0 0 chr3 112835187 112835218 -46764565 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 4 1445 358 312 0 0 chr3 112835230 112835323 -46764460 - RLTR26 LTR ERVK 0 642 550 4 1445 1115 306 102 56 chr3 112835395 112835915 -46763868 - RLTR26 LTR ERVK -98 544 1 4 1445 2157 235 48 36 chr3 112836270 112836874 -46762909 + Lx7 LINE L1 6843 7453 -243 4 1445 985 195 77 45 chr3 112836890 112837137 -46762646 - RLTR22_Mur LTR ERVK -4 1844 1590 4 1445 3642 123 5 17 chr3 112837420 112838009 -46761774 - RLTR22_Mur LTR ERVK -1043 805 224 4 1445 321 322 11 53 chr3 112838013 112838108 -46761675 - RSINE1 SINE B4 -72 93 3 4 1445 4006 67 4 6 chr3 112838242 112838765 -46761018 - L1_Mus1 LINE L1 -4 6563 6042 4 1445 242 242 45 15 chr3 112838976 112839043 -46760740 + MLT1A1 LTR MaLR 71 139 -269 4 1445 328 325 25 59 chr3 112839339 112839521 -46760262 + MTE2a LTR MaLR 91 308 -111 4 1445 2123 148 17 111 chr3 112839521 112840097 -46759686 - Lx2 LINE L1 -999 5998 5447 5 1445 8457 33 0 0 chr3 112840095 112841091 -46758692 - L1Md_T LINE L1 0 6582 5587 5 1445 11522 20 0 0 chr3 112841102 112842436 -46757347 + L1Md_T LINE L1 4257 5590 -293 5 1445 2425 120 10 0 chr3 112842425 112842808 -46756975 - Lx2 LINE L1 -421 5462 5076 5 1445 3487 121 4 20 chr3 112842808 112843367 -46756416 + L1_Mus3 LINE L1 6081 6630 -8 5 1445 234 218 167 0 chr3 112843474 112843552 -46756231 + MTE2a LTR MaLR 275 365 -14 4 1445 223 106 76 0 chr3 112844704 112844770 -46755013 + (TA)n Simple_repeat Simple_repeat 2 72 0 5 1445 340 91 19 26 chr3 112844910 112844981 -46754802 - L1_Mm LINE L1 -3417 2466 2400 5 1445 1571 11 0 0 chr3 112845007 112845182 -46754601 + L1Md_A LINE L1 5412 5586 -297 5 1445 8788 15 0 0 chr3 112845182 112846178 -46753605 + L1Md_A LINE L1 5587 6582 0 5 1445 2893 102 31 0 chr3 112846239 112846662 -46753121 - Lx LINE L1 -574 6080 5645 5 1445 3303 149 22 6 chr3 112846662 112847209 -46752574 + Lx LINE L1 6093 6648 -6 5 1445 239 312 52 10 chr3 112847233 112847330 -46752453 - Lx9 LINE L1 -451 7193 7093 5 1445 662 358 41 15 chr3 112847323 112847715 -46752068 - Lx9 LINE L1 -836 6808 6263 5 1445 1993 259 73 42 chr3 112847761 112847831 -46751952 + Lx9 LINE L1 5050 5116 -731 5 1445 2773 51 3 0 chr3 112847831 112848162 -46751621 - IAPEY3_LTR LTR ERVK 0 332 1 5 1445 1993 264 66 42 chr3 112848162 112848964 -46750819 + Lx9 LINE L1 5117 5981 -1663 5 1445 1242 90 0 0 chr3 112849158 112849336 -46750447 + (TAGA)n Simple_repeat Simple_repeat 1 178 0 5 1445 21 57 0 0 chr3 112849899 112849934 -46749849 + AT_rich Low_complexity Low_complexity 1 35 0 5 180 30381 114 3 2 chr3 112849983 112855369 -46744414 - L1_Mus1 LINE L1 0 6570 1177 5 1446 662 162 36 11 chr3 112857242 112857589 -46742194 - L1_Mus1 LINE L1 -2705 1213 987 5 1446 2480 238 57 41 chr3 112857588 112858508 -46741275 - L1Md_F LINE L1 -5433 1108 164 5 1446 342 0 0 0 chr3 112858642 112858680 -46741103 + (CAAAA)n Simple_repeat Simple_repeat 2 39 0 5 1446 622 357 34 19 chr3 112859815 112860078 -46739705 - B4A SINE B4 -1 291 25 5 1446 444 51 0 0 chr3 112860103 112860162 -46739621 + (CA)n Simple_repeat Simple_repeat 2 60 0 5 1446 24 0 0 0 chr3 112861085 112861109 -46738674 + AT_rich Low_complexity Low_complexity 1 24 0 5 1446 538 314 69 6 chr3 112861217 112861390 -46738393 - ID_B1 SINE B4 -7 217 34 5 1446 22 35 0 0 chr3 112861401 112861430 -46738353 + AT_rich Low_complexity Low_complexity 1 29 0 5 1446 2510 146 34 32 chr3 112861735 112861921 -46737862 + MusHAL1 LINE L1 282 467 -2245 5 1446 441 0 0 0 chr3 112861921 112861970 -46737813 + (TAA)n Simple_repeat Simple_repeat 1 49 0 5 1446 2510 146 34 32 chr3 112861970 112862321 -46737462 + MusHAL1 LINE L1 468 820 -1892 5 1446 5187 44 2 2 chr3 112862321 112862982 -46736801 + L1Md_T LINE L1 5941 6582 0 5 1446 350 130 0 0 chr3 112862997 112863051 -46736732 + L1_Mur3 LINE L1 4464 4517 -1363 5 1446 383 148 25 0 chr3 112863051 112863132 -46736651 + L1Md_F2 LINE L1 6500 6582 0 5 1446 33 43 0 0 chr3 112863210 112863257 -46736526 + AT_rich Low_complexity Low_complexity 1 47 0 5 1446 1597 140 4 7 chr3 112863257 112863530 -46736253 + L1_Mur1 LINE L1 4515 4786 -1100 5 1446 318 22 0 0 chr3 112863532 112863578 -46736205 - L1_Mus4 LINE L1 -19 6617 6572 5 1446 5996 78 0 0 chr3 112863889 112864663 -46735120 - L1_Mus1 LINE L1 0 6567 5794 5 1446 321 311 63 70 chr3 112865272 112865559 -46734224 + L1MDa LINE L1 1120 1404 -5229 5 1446 247 291 23 35 chr3 112865632 112865803 -46733980 + L1_Mur3 LINE L1 1453 1621 -4259 5 1446 569 343 37 33 chr3 112865803 112866017 -46733766 + B3 SINE B2 2 216 0 5 1446 21 36 0 0 chr3 112866129 112866157 -46733626 + AT_rich Low_complexity Low_complexity 1 28 0 5 1446 23 0 0 0 chr3 112866480 112866503 -46733280 + AT_rich Low_complexity Low_complexity 1 23 0 5 1446 245 295 186 0 chr3 112866983 112867112 -46732671 - L1MD1 LINE L1 -32 6210 6058 5 1446 229 300 30 10 chr3 112867191 112867292 -46732491 - L1MD1 LINE L1 -378 5864 5762 5 1446 306 98 0 0 chr3 112867299 112867350 -46732433 + (A)n Simple_repeat Simple_repeat 1 51 0 5 1446 241 265 69 0 chr3 112867383 112867485 -46732298 - L1MD1 LINE L1 -539 5703 5595 5 1446 357 24 0 0 chr3 112867485 112867527 -46732256 + (CA)n Simple_repeat Simple_repeat 1 42 0 5 1446 290 47 47 0 chr3 112867547 112867590 -46732193 + (CATATA)n Simple_repeat Simple_repeat 3 47 0 5 1446 216 135 0 0 chr3 112867891 112867928 -46731855 + (CATA)n Simple_repeat Simple_repeat 2 38 0 5 1446 28762 72 3 106 chr3 112868183 112870729 -46729054 + L1Md_Gf LINE L1 240 2815 -3071 5 1446 2175 125 217 26 chr3 112870729 112871189 -46728594 - RLTR6_Mm LTR ERV1 -70 584 37 5 1446 228 218 196 56 chr3 112871191 112871298 -46728485 - RLTR6_Mm LTR ERV1 -532 122 1 5 1446 28762 72 3 106 chr3 112871298 112874037 -46725746 + L1Md_Gf LINE L1 2816 5589 -297 5 1446 7929 55 2 2 chr3 112874038 112875031 -46724752 + L1Md_F2 LINE L1 5588 6580 -2 5 1446 1017 277 6 56 chr3 112875177 112875514 -46724269 - Lx6 LINE L1 -81 7379 7060 5 1446 228 314 0 0 chr3 112875788 112875890 -46723893 + L1M5 LINE L1 4547 4648 -1498 5 1446 330 389 22 0 chr3 112875924 112876063 -46723720 + B1F1 SINE Alu 8 149 0 5 1446 21 36 0 0 chr3 112876069 112876097 -46723686 + AT_rich Low_complexity Low_complexity 1 28 0 5 1446 241 169 51 0 chr3 112876517 112876576 -46723207 + Lx7 LINE L1 7635 7696 0 5 1446 325 379 0 22 chr3 112876610 112876745 -46723038 + B1_Mus1 SINE Alu 11 142 -6 5 1446 665 369 66 44 chr3 112880280 112880688 -46719095 - MLT1E3 LTR MaLR -15 609 193 5 1446 3705 220 18 10 chr3 112880928 112881695 -46718088 - Lx5 LINE L1 0 7050 6278 5 1446 429 20 0 0 chr3 112882112 112882162 -46717621 + (TAA)n Simple_repeat Simple_repeat 3 52 0 5 1446 23 0 0 0 chr3 112882534 112882557 -46717226 + AT_rich Low_complexity Low_complexity 1 23 0 5 1446 33 25 0 0 chr3 112883930 112883970 -46715813 + AT_rich Low_complexity Low_complexity 1 40 0 5 1446 1242 208 43 0 chr3 112884488 112884767 -46715016 - Lx9 LINE L1 -546 7098 6808 5 1446 2022 250 105 55 chr3 112884785 112885351 -46714432 + Lx7 LINE L1 6901 7484 -212 5 1446 591 15 0 0 chr3 112885351 112885419 -46714364 + (TC)n Simple_repeat Simple_repeat 1 68 0 5 1446 2022 250 105 55 chr3 112885419 112885592 -46714191 + Lx7 LINE L1 7485 7677 -19 5 1446 446 236 18 94 chr3 112885786 112886010 -46713773 - Lx7 LINE L1 -202 7494 7288 5 1446 35 71 0 0 chr3 112886081 112886151 -46713632 + AT_rich Low_complexity Low_complexity 1 70 0 5 1446 4376 176 154 15 chr3 112886380 112886869 -46712914 + RLTR25A LTR ERVK 12 513 -590 5 1446 279 0 0 0 chr3 112886869 112886900 -46712883 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 5 1446 4376 176 154 15 chr3 112886900 112887368 -46712415 + RLTR25A LTR ERVK 514 1102 -1 5 1446 1367 207 73 40 chr3 112888974 112889301 -46710482 + Lx5 LINE L1 6565 6902 -148 5 1446 21 89 0 0 chr3 112890047 112890103 -46709680 + AT_rich Low_complexity Low_complexity 1 56 0 5 1446 951 290 75 40 chr3 112890302 112890663 -46709120 + MTD LTR MaLR 14 365 -14 5 1446 11746 103 15 9 chr3 112890876 112893457 -46706326 + L1Md_F LINE L1 380 2976 -2907 5 1446 2937 12 0 0 chr3 112893457 112893783 -46706000 + IAPLTR3 LTR ERVK 1 326 0 5 1446 56904 21 6 0 chr3 112893783 112900542 -46699241 + IAPLTR3-int LTR ERVK 1 6801 -20 5 1446 2542 36 3 0 chr3 112900542 112900851 -46698932 + IAPLTR3 LTR ERVK 1 310 -16 5 1446 19537 84 12 3 chr3 112900855 112903708 -46696075 + L1Md_F2 LINE L1 2711 5586 -297 5 1446 7590 55 12 6 chr3 112903708 112904686 -46695097 + L1Md_F2 LINE L1 5587 6570 -12 5 1446 1975 238 36 6 chr3 112904844 112905314 -46694469 - Lx5 LINE L1 -94 6956 6473 5 1446 32 75 0 0 chr3 112906256 112906323 -46693460 + AT_rich Low_complexity Low_complexity 1 67 0 5 1446 26 30 0 0 chr3 112906461 112906494 -46693289 + AT_rich Low_complexity Low_complexity 1 33 0 5 1446 1936 279 97 23 chr3 112906522 112907182 -46692601 - MMAR1 DNA Mariner 0 1286 578 5 1446 1944 292 75 10 chr3 112907182 112907874 -46691909 + Lx6 LINE L1 6705 7441 -19 5 1446 513 200 118 39 chr3 112907918 112908121 -46691662 - MMAR1 DNA Mariner -1066 220 2 5 1446 389 316 51 11 chr3 112908328 112908504 -46691279 - Lx8 LINE L1 -234 7239 7057 5 1446 435 211 65 37 chr3 112908573 112908681 -46691102 - PB1D9 SINE Alu -1 119 9 5 1446 26 0 0 0 chr3 112908743 112908769 -46691014 + AT_rich Low_complexity Low_complexity 1 26 0 5 1446 28 48 0 0 chr3 112909227 112909269 -46690514 + AT_rich Low_complexity Low_complexity 1 42 0 5 1446 31 26 0 0 chr3 112909846 112909884 -46689899 + AT_rich Low_complexity Low_complexity 1 38 0 5 1446 611 306 82 15 chr3 112909902 112910231 -46689552 - Lx3C LINE L1 -25 6951 6601 5 1446 2834 123 9 48 chr3 112910212 112910749 -46689034 + L1_Mur2 LINE L1 4211 4726 -1151 5 1446 229 145 14 14 chr3 112910749 112910771 -46689012 + (TA)n Simple_repeat Simple_repeat 1 22 0 5 1446 327 49 0 0 chr3 112910771 112910812 -46688971 + (TG)n Simple_repeat Simple_repeat 2 42 0 5 1446 229 145 14 14 chr3 112910812 112910859 -46688924 + (TA)n Simple_repeat Simple_repeat 2 48 0 5 1446 930 160 17 12 chr3 112910859 112911066 -46688717 + L1_Mur2 LINE L1 4710 4909 -971 5 1446 1049 229 61 40 chr3 112911067 112911344 -46688439 + RLTR20D LTR ERVK 1 283 -285 5 1446 324 306 58 58 chr3 112911324 112911398 -46688385 + RLTR20D LTR ERVK 411 479 -99 5 1446 612 27 0 0 chr3 112911398 112911472 -46688311 + (TG)n Simple_repeat Simple_repeat 2 75 0 5 1446 324 286 32 32 chr3 112911472 112911567 -46688216 + RLTR20D LTR ERVK 412 565 -13 5 1446 827 218 11 0 chr3 112911567 112911755 -46688028 + L1_Mur2 LINE L1 4896 5085 -792 5 1446 618 26 0 0 chr3 112911826 112911902 -46687881 + (TC)n Simple_repeat Simple_repeat 1 76 0 5 1446 524 56 14 0 chr3 112912356 112912428 -46687355 + (TA)n Simple_repeat Simple_repeat 2 74 0 5 1446 207 309 0 0 chr3 112912519 112912574 -46687209 + (TG)n Simple_repeat Simple_repeat 1 55 0 5 1446 1230 284 152 30 chr3 112912691 112913166 -46686617 - RMER13A LTR ERVK -134 726 194 5 1446 16369 164 87 38 chr3 112913166 112918310 -46681473 + L1_Mus1 LINE L1 1139 6566 -1 5 1446 183 186 0 0 chr3 112918314 112918357 -46681426 + A-rich Low_complexity Low_complexity 1 43 0 5 1446 347 322 34 11 chr3 112919058 112919234 -46680549 + L1MA4 LINE L1 4796 4975 -1168 5 1446 606 208 21 68 chr3 112919198 112919389 -46680394 - Lx6 LINE L1 -12 7448 7267 5 1446 266 282 83 14 chr3 112919340 112919484 -46680299 + L1M2 LINE L1 4886 5039 -1104 5 1446 269 211 99 63 chr3 112919484 112919595 -46680188 + B2_Mm2 SINE B2 70 184 -11 5 1446 416 347 88 28 chr3 112919733 112919914 -46679869 - RMER30 DNA MER1_type -1 201 10 5 1446 860 323 45 21 chr3 112919922 112920606 -46679177 + L1MA4 LINE L1 5175 5921 -379 5 1446 2021 129 31 3 chr3 112920913 112921231 -46678552 + ORR1A2 LTR MaLR 1 327 0 5 1446 9705 157 64 14 chr3 112921231 112922178 -46677605 + ORR1A2-int LTR MaLR 1 1039 -924 5 1446 4453 68 5 10 chr3 112922178 112922770 -46677013 + L1Md_F2 LINE L1 5988 6576 -6 5 1446 825 11 0 0 chr3 112922773 112922867 -46676916 + (GAA)n Simple_repeat Simple_repeat 2 95 0 5 1446 9705 157 64 14 chr3 112922867 112923786 -46675997 + ORR1A2-int LTR MaLR 1040 1963 0 5 1446 2015 149 12 0 chr3 112923786 112924109 -46675674 + ORR1A2 LTR MaLR 1 327 0 5 1446 32724 70 4 13 chr3 112924528 112931014 -46668769 - L1Md_F3 LINE L1 -2 6582 160 5 1446 3709 251 67 9 chr3 112931238 112931752 -46668031 - Lx6 LINE L1 -11 7449 6898 5 1446 504 0 0 0 chr3 112931752 112931808 -46667975 + (TC)n Simple_repeat Simple_repeat 1 56 0 6 1446 3709 251 67 9 chr3 112931808 112932269 -46667514 - Lx6 LINE L1 -563 6897 6418 5 1446 549 0 0 0 chr3 112932570 112932631 -46667152 + (GA)n Simple_repeat Simple_repeat 2 62 0 6 1446 1602 181 15 158 chr3 112933809 112934138 -46665645 - BGLII_A LTR ERVK 0 445 194 6 1446 671 35 12 0 chr3 112934138 112934224 -46665559 + (TC)n Simple_repeat Simple_repeat 1 87 0 6 1446 1602 181 15 158 chr3 112934224 112934413 -46665370 - BGLII_A LTR ERVK -252 193 1 6 1446 310 225 28 14 chr3 112934442 112934514 -46665269 - MER34A LTR ERV1 -498 73 1 6 1446 36 0 0 0 chr3 112934569 112934605 -46665178 + AT_rich Low_complexity Low_complexity 1 36 0 6 1446 279 0 0 0 chr3 112935081 112935112 -46664671 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 6 1446 402 246 47 116 chr3 112935407 112935536 -46664247 + B1_Mur1 SINE Alu 19 138 -11 6 1446 764 279 5 34 chr3 112936542 112936750 -46663033 + MTEa LTR MaLR 15 216 -163 6 1446 362 115 16 0 chr3 112936750 112936811 -46662972 + (TC)n Simple_repeat Simple_repeat 2 63 0 6 1446 569 305 29 0 chr3 112936812 112936986 -46662797 + MTEa LTR MaLR 201 379 0 6 1446 369 365 39 11 chr3 112937138 112937318 -46662465 - ORR1E LTR MaLR -149 210 26 6 1446 232 213 32 32 chr3 112938753 112938816 -46660967 - B1F1 SINE Alu -8 141 79 6 1446 5051 44 2 2 chr3 112938853 112939468 -46660315 + L1Md_F2 LINE L1 5953 6567 -15 6 1446 1942 145 86 47 chr3 112939480 112939864 -46659919 + RMER16 LTR ERVK 135 533 0 6 1446 693 219 206 15 chr3 112939864 112939999 -46659784 - RLTR22_Mur LTR ERVK -92 1756 1583 6 1446 1156 120 17 0 chr3 112940136 112940311 -46659472 + B2_Mm1t SINE B2 2 179 -14 6 1446 287 142 319 34 chr3 112940395 112940511 -46659272 + B2_Mm2 SINE B2 47 195 0 6 1446 3714 164 81 11 chr3 112940560 112941312 -46658471 - RLTR22_Mur LTR ERVK -1043 805 1 6 1446 379 177 0 0 chr3 112941317 112941396 -46658387 + Lx3C LINE L1 5259 5337 -540 6 1446 1079 114 0 0 chr3 112941395 112941561 -46658222 - L1_Mm LINE L1 -1702 4181 4016 6 1446 12286 76 12 1 chr3 112941751 112943141 -46656642 + L1Md_F2 LINE L1 3841 5232 -651 6 1446 414 0 0 0 chr3 112943141 112943187 -46656596 + (TA)n Simple_repeat Simple_repeat 2 47 0 6 1446 12286 76 12 1 chr3 112943187 112943520 -46656263 + L1Md_F2 LINE L1 5233 5581 -302 6 1446 7084 88 9 2 chr3 112943523 112944493 -46655290 + L1Md_F2 LINE L1 5587 6563 -19 6 1446 236 30 30 0 chr3 112944493 112944526 -46655257 + (TAA)n Simple_repeat Simple_repeat 1 34 0 6 1446 4667 176 14 7 chr3 112944526 112945691 -46654092 + Lx3C LINE L1 5337 6510 -466 6 1446 1172 264 50 32 chr3 112945691 112946070 -46653713 - RMER16 LTR ERVK 0 533 148 6 1446 1741 216 114 14 chr3 112946097 112946525 -46653258 + Lx3C LINE L1 6504 6974 -2 6 1446 722 225 37 21 chr3 112946596 112946787 -46652996 + RLTR12A LTR ERVK 361 554 -14 6 1446 468 0 0 0 chr3 112946939 112946991 -46652792 + (CA)n Simple_repeat Simple_repeat 1 52 0 6 1446 1495 329 53 28 chr3 112947058 112948031 -46651752 + Lx9 LINE L1 6314 7473 -171 6 1446 22 0 0 0 chr3 112948112 112948134 -46651649 + AT_rich Low_complexity Low_complexity 1 22 0 6 1446 256 229 0 54 chr3 112948157 112948231 -46651552 + L1_Rod LINE L1 5487 5556 -291 6 1446 415 257 69 26 chr3 112948456 112948572 -46651211 - B1_Mur1 SINE Alu 0 149 29 6 1446 1145 323 28 67 chr3 112948580 112949257 -46650526 - Lx9 LINE L1 -213 7431 6781 6 1446 582 183 6 12 chr3 112949287 112949453 -46650330 + (TA)n Simple_repeat Simple_repeat 2 166 0 6 1446 357 290 9 61 chr3 112951461 112951575 -46648208 - B1_Mur4 SINE Alu -1 149 42 6 1446 565 181 0 16 chr3 112951972 112952101 -46647682 + Lx3A LINE L1 6848 6974 -7 6 1446 22 35 0 0 chr3 112954473 112954502 -46645281 + AT_rich Low_complexity Low_complexity 1 29 0 6 1446 816 266 30 94 chr3 112955756 112956129 -46643654 + Lx9 LINE L1 7286 7634 -10 6 1446 288 0 0 0 chr3 112956138 112956170 -46643613 + (TA)n Simple_repeat Simple_repeat 2 33 0 6 1446 206 268 0 27 chr3 112956631 112956704 -46643079 + CT-rich Low_complexity Low_complexity 2 72 0 6 1446 6726 78 13 2 chr3 112957422 112958328 -46641455 + L1_Mus3 LINE L1 5722 6637 -1 6 1446 26 30 0 0 chr3 112958869 112958902 -46640881 + AT_rich Low_complexity Low_complexity 1 33 0 6 1446 26 0 0 0 chr3 112958935 112958961 -46640822 + AT_rich Low_complexity Low_complexity 1 26 0 6 1446 2869 94 132 0 chr3 112960011 112960671 -46639112 - L1_Mur1 LINE L1 -4215 1671 925 6 1446 27 0 0 0 chr3 112960681 112960708 -46639075 + AT_rich Low_complexity Low_complexity 1 27 0 6 1446 2098 341 99 37 chr3 112961186 112962417 -46637366 + MTE-int LTR MaLR 194 1501 -79 6 1446 490 347 83 12 chr3 112962524 112962778 -46637005 + ORR1E LTR MaLR 88 359 0 6 1446 2053 96 0 10 chr3 112963428 112963724 -46636059 - L1Md_F2 LINE L1 0 6582 6290 6 1446 29 70 0 0 chr3 112963752 112963809 -46635974 + AT_rich Low_complexity Low_complexity 1 57 0 6 1446 238 404 65 30 chr3 112963870 112964102 -46635681 + B4A SINE B4 53 292 0 6 1446 1215 41 7 0 chr3 112964655 112964801 -46634982 + B1_Mus2 SINE Alu 1 147 0 6 1446 678 47 0 0 chr3 112964818 112964904 -46634879 + (GAAA)n Simple_repeat Simple_repeat 3 88 0 6 1446 21 36 0 0 chr3 112964991 112965019 -46634764 + AT_rich Low_complexity Low_complexity 1 28 0 6 1446 338 269 30 30 chr3 112965033 112965167 -46634616 - Lx9 LINE L1 -13 7631 7498 6 1446 210 145 15 46 chr3 112965628 112965693 -46634090 + CT-rich Low_complexity Low_complexity 2 64 0 6 1446 2572 228 154 7 chr3 112965883 112966571 -46633212 + Lx2B LINE L1 6200 6988 -12 6 1446 198 0 0 0 chr3 112966923 112966945 -46632838 + (GGAA)n Simple_repeat Simple_repeat 3 24 0 6 1446 198 0 0 0 chr3 112967000 112967022 -46632761 + (CA)n Simple_repeat Simple_repeat 1 22 0 6 1446 454 266 5 43 chr3 112967188 112967373 -46632410 - Lx7 LINE L1 0 7696 7519 6 1446 448 380 88 6 chr3 112967425 112967764 -46632019 + Lx8 LINE L1 6215 6581 -892 6 1446 1614 121 44 75 chr3 112967887 112968181 -46631602 + RLTR23 LTR ERV1 146 430 0 6 1446 1164 220 162 29 chr3 112968181 112968534 -46631249 + Lx5 LINE L1 5788 6187 -863 6 1446 3895 198 25 1 chr3 112968542 112969289 -46630494 + Lx5 LINE L1 6278 7042 -8 6 1446 424 283 37 56 chr3 112969446 112969607 -46630176 + MT2A LTR ERVL 279 436 -97 6 1446 1082 96 0 0 chr3 112969894 112970040 -46629743 + B1_Mm SINE Alu 1 146 -1 6 1446 191 98 73 0 chr3 112970041 112970082 -46629701 + A-rich Low_complexity Low_complexity 1 44 0 6 1446 468 0 0 0 chr3 112970170 112970222 -46629561 + (TC)n Simple_repeat Simple_repeat 1 52 0 6 1446 525 16 0 0 chr3 112970222 112970283 -46629500 + (CA)n Simple_repeat Simple_repeat 1 62 0 6 1446 262 313 15 38 chr3 112970767 112970900 -46628883 + Lx9 LINE L1 7201 7330 -314 6 1446 722 136 38 13 chr3 112971447 112971604 -46628179 + G-rich Low_complexity Low_complexity 5 165 0 6 1446 6538 133 36 13 chr3 112972505 112973611 -46626172 - Lx3A LINE L1 -9 6972 5841 6 1446 5581 90 11 1 chr3 112973708 112975035 -46624748 - L1VL4 LINE L1 -2007 1552 212 6 1446 2087 85 16 13 chr3 112975050 112975359 -46624424 + MusHAL1 LINE L1 936 1245 -1467 6 1446 1755 119 7 25 chr3 112975329 112975613 -46624170 + Lx LINE L1 5628 5906 -1091 6 1446 2781 190 57 4 chr3 112975614 112976142 -46623641 + Lx LINE L1 6098 6653 -1 6 1446 2594 254 108 5 chr3 112977144 112977794 -46621989 - Lx5 LINE L1 -247 6803 6087 6 1446 486 188 55 123 chr3 112977791 112978010 -46621773 + Lx7 LINE L1 7488 7691 -5 6 1446 3779 23 0 2 chr3 112978500 112978941 -46620842 - L1Md_F3 LINE L1 -541 6043 5604 6 1446 4510 36 38 2 chr3 112978941 112979500 -46620283 + L1Md_F3 LINE L1 6006 6584 0 6 1446 183 226 45 61 chr3 112979535 112979601 -46620182 - MIRc SINE MIR -123 145 81 6 1446 206 32 32 0 chr3 112980129 112980160 -46619623 + (TG)n Simple_repeat Simple_repeat 2 33 0 6 1446 560 178 0 0 chr3 112980163 112980264 -46619519 + MTC LTR MaLR 1 101 -320 6 1446 2286 284 130 15 chr3 112980282 112980535 -46619248 - Lx5 LINE L1 -141 6909 6806 6 1446 492 32 0 0 chr3 112980535 112980597 -46619186 + (CA)n Simple_repeat Simple_repeat 1 62 0 6 1446 2286 280 63 74 chr3 112980597 112982083 -46617700 - Lx5 LINE L1 -245 6805 5328 6 1446 1320 203 36 7 chr3 112982070 112982292 -46617491 + L1_Mur2 LINE L1 4058 4283 -1594 6 1446 375 23 0 0 chr3 112982292 112982336 -46617447 + (CA)n Simple_repeat Simple_repeat 1 44 0 6 1446 1320 203 36 7 chr3 112982336 112982420 -46617363 + L1_Mur2 LINE L1 4284 4372 -1505 6 1446 3742 65 6 8 chr3 112982543 112983026 -46616757 + L1_Mus1 LINE L1 6083 6564 -3 6 1446 30 27 0 0 chr3 112983061 112983098 -46616685 + AT_rich Low_complexity Low_complexity 1 37 0 6 1446 241 353 98 41 chr3 112983171 112983416 -46616367 + Lx8 LINE L1 6997 7255 -218 6 1446 1337 78 44 5 chr3 112983424 112983630 -46616153 - L1_Mus3 LINE L1 0 6638 6425 6 1446 2903 76 46 0 chr3 112983631 112984024 -46615759 + L1_Mus3 LINE L1 5978 6388 -250 6 1447 425 90 15 0 chr3 112984221 112984288 -46615495 + (TA)n Simple_repeat Simple_repeat 1 68 0 6 1447 1819 56 0 0 chr3 112984422 112984656 -46615127 + L1Md_A LINE L1 6349 6582 0 6 1447 219 36 0 0 chr3 112986018 112986046 -46613737 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 6 1447 324 348 14 14 chr3 112986052 112986192 -46613591 - B1_Mur1 SINE Alu -7 142 3 6 1447 1326 101 0 0 chr3 112986462 112986650 -46613133 + L1_Mus2 LINE L1 6378 6565 -1 6 1447 1046 81 0 0 chr3 112987327 112987463 -46612320 + B1_Mus2 SINE Alu 1 136 -11 6 1447 31513 35 1 0 chr3 112987628 112988946 -46610837 - L1Md_T LINE L1 0 6582 5294 6 1447 2513 61 0 3 chr3 112988946 112989277 -46610506 - L1Md_A LINE L1 0 6582 6253 6 1447 31513 25 1 0 chr3 112989277 112992404 -46607379 - L1Md_T LINE L1 -590 5293 2163 6 1447 4782 24 0 0 chr3 112992403 112992991 -46606792 + L1Md_T LINE L1 1589 2176 -3707 6 1447 525 32 0 0 chr3 112994490 112994553 -46605230 + (TA)n Simple_repeat Simple_repeat 2 64 0 6 1447 27 0 0 0 chr3 112994663 112994690 -46605093 + AT_rich Low_complexity Low_complexity 1 27 0 6 1447 265 237 106 14 chr3 112995940 112996081 -46603702 - Lx9 LINE L1 0 7644 7491 6 1447 337 206 10 10 chr3 112996095 112996193 -46603590 + (TA)n Simple_repeat Simple_repeat 2 99 0 6 1447 331 336 42 7 chr3 112996264 112996408 -46603375 - Lx9 LINE L1 -205 7439 7291 6 1447 3989 101 13 69 chr3 112996659 112997338 -46602445 - RLTR13B4 LTR ERVK -162 641 1 6 1447 702 46 0 0 chr3 112997989 112998076 -46601707 + LTRIS_Mm LTR ERV1 1 87 -395 6 1447 1056 261 0 4 chr3 112998080 112998341 -46601442 - MuRRS4-int LTR ERV1 -2088 2975 2716 6 1447 10658 100 10 9 chr3 112998368 112999994 -46599789 - MuRRS-int LTR ERV1 -4499 3279 1643 6 1447 3489 70 216 11 chr3 113000000 113000589 -46599194 - MuRRS-int LTR ERV1 -3284 1406 726 1 1447 440 18 18 0 chr3 113000589 113000646 -46599137 + (CA)n Simple_repeat Simple_repeat 2 59 0 2 1447 3489 72 61 8 chr3 113000646 113000692 -46599091 - MuRRS-int LTR ERV1 -3965 725 649 1 1447 666 85 75 0 chr3 113000692 113000786 -46598997 + LTRIS_Mm LTR ERV1 382 482 0 3 1447 1603 208 2 12 chr3 113001550 113001954 -46597829 + L1_Mur1 LINE L1 866 1265 -5719 4 1447 1165 207 0 80 chr3 113001979 113002341 -46597442 + L1_Mur1 LINE L1 1943 2275 -3611 4 1447 3850 168 27 14 chr3 113002337 113003121 -46596662 - L1_Mur2 LINE L1 -1494 4383 3590 5 1447 5546 176 19 170 chr3 113003122 113003610 -46596173 + Lx LINE L1 4390 4826 -1057 6 1447 3470 18 5 0 chr3 113003610 113004004 -46595779 + MTA_Mm LTR MaLR 1 396 0 7 1447 9431 21 4 0 chr3 113004004 113005098 -46594685 + MTA_Mm-int LTR MaLR 1 1098 0 7 1447 1803 23 5 0 chr3 113005098 113005317 -46594466 + MTA_Mm LTR MaLR 1 220 -176 8 1447 5546 155 18 97 chr3 113005317 113006857 -46592926 + Lx LINE L1 4827 6381 -273 6 1447 2127 117 49 5 chr3 113006862 113007249 -46592534 + L1_Mur1 LINE L1 2270 2673 -3213 4 1447 1025 186 17 34 chr3 113007247 113007438 -46592345 - Lx3C LINE L1 -454 6522 6331 9 1447 3575 67 19 13 chr3 113007438 113007910 -46591873 + MT2C_Mm LTR ERVL 1 475 0 1 1447 1025 186 17 34 chr3 113007910 113007957 -46591826 - Lx3C LINE L1 -646 6330 6288 9 1447 1751 171 43 102 chr3 113007960 113008060 -46591723 + Lx3C LINE L1 6534 6631 -345 1 1447 5549 136 12 35 chr3 113008060 113008979 -46590804 + Lx2A LINE L1 6109 7006 -2 1 1447 1751 171 43 102 chr3 113008979 113009347 -46590436 + Lx3C LINE L1 6632 6974 -2 1 1447 191 157 20 0 chr3 113010099 113010150 -46589633 + (TAAA)n Simple_repeat Simple_repeat 1 52 0 1 1447 231 200 29 0 chr3 113010280 113010350 -46589433 + L1M2 LINE L1 1634 1705 -5144 1 1447 899 169 6 6 chr3 113010944 113011123 -46588660 - Lx5 LINE L1 -1041 6009 5831 1 1447 1279 149 14 63 chr3 113011121 113011189 -46588594 - Lx5 LINE L1 -478 5399 5349 1 1447 4534 203 28 19 chr3 113011189 113012214 -46587569 - Lx2B LINE L1 -2 6998 5964 1 1447 1279 149 14 63 chr3 113012214 113012431 -46587352 - Lx5 LINE L1 -529 5348 5128 1 1447 708 45 0 0 chr3 113012431 113012519 -46587264 + (TTTC)n Simple_repeat Simple_repeat 2 89 0 1 1447 5906 165 7 6 chr3 113012520 113013875 -46585908 - Lx LINE L1 -12 6642 5293 1 1447 358 238 25 0 chr3 113013885 113014007 -46585776 - Lx5 LINE L1 -1013 4864 4740 1 1447 1397 200 62 16 chr3 113014014 113014665 -46585118 - Lx5 LINE L1 -4327 1550 868 1 1447 2067 124 14 38 chr3 113015251 113015595 -46584188 - IAPEY2_LTR LTR ERVK -3 354 19 1 1447 47885 87 10 6 chr3 113015595 113022499 -46577284 - IAPEy-int LTR ERVK -8 7505 575 1 1447 23 54 0 0 chr3 113023496 113023533 -46576250 + AT_rich Low_complexity Low_complexity 1 37 0 2 1447 200 375 78 23 chr3 113023714 113024022 -46575761 - L2a LINE L2 -1 3425 3101 2 1447 279 0 0 0 chr3 113024398 113024429 -46575354 + (TTTTG)n Simple_repeat Simple_repeat 3 33 0 2 1447 269 275 32 21 chr3 113024516 113024609 -46575174 + Lx8 LINE L1 6645 6738 -735 2 1447 641 302 88 45 chr3 113024675 113024915 -46574868 - RLTR15 LTR ERVK -15 344 101 2 1447 1031 30 0 89 chr3 113024915 113025095 -46574688 + (TC)n Simple_repeat Simple_repeat 1 164 0 2 1447 641 302 88 45 chr3 113025095 113025184 -46574599 - RLTR15 LTR ERVK -259 100 1 2 1447 1145 319 39 14 chr3 113025184 113025676 -46574107 + Lx8 LINE L1 6733 7236 -237 2 1447 264 185 31 0 chr3 113026849 113026914 -46572869 + (TATATG)n Simple_repeat Simple_repeat 5 71 0 2 1447 23 0 0 0 chr3 113026922 113026945 -46572838 + AT_rich Low_complexity Low_complexity 1 23 0 2 1447 26 64 0 0 chr3 113027342 113027389 -46572394 + AT_rich Low_complexity Low_complexity 1 47 0 2 1447 1819 147 3 0 chr3 113027568 113027860 -46571923 + Lx LINE L1 6359 6651 -3 2 1447 2274 127 30 70 chr3 113027918 113028316 -46571467 + RLTR9A2 LTR ERVK 1 382 -1 3 1447 2237 82 0 0 chr3 113028351 113028642 -46571141 + L1_Mus1 LINE L1 6268 6558 -9 3 1447 441 0 0 0 chr3 113028645 113028694 -46571089 + (TAAA)n Simple_repeat Simple_repeat 3 51 0 3 1447 31 26 0 0 chr3 113029048 113029086 -46570697 + AT_rich Low_complexity Low_complexity 1 38 0 3 1447 1026 126 45 22 chr3 113029446 113029625 -46570158 - B2_Mm2 SINE B2 -8 187 5 3 1447 927 75 0 50 chr3 113029625 113029646 -46570137 + B1_Mus2 SINE Alu 15 32 -115 3 1447 2472 99 0 0 chr3 113029646 113029978 -46569805 + IAPEY3_LTR LTR ERVK 1 332 0 3 1447 927 75 0 50 chr3 113029978 113030096 -46569687 + B1_Mus2 SINE Alu 33 147 0 3 1447 4706 129 45 26 chr3 113030103 113030901 -46568882 - Lx LINE L1 -6 6648 5836 3 1447 2757 135 41 0 chr3 113031276 113031736 -46568047 - L1_Mm LINE L1 -42 5841 5363 3 1447 1710 163 0 3 chr3 113031735 113032048 -46567735 + L1_Mm LINE L1 4676 4987 -896 3 1447 31928 80 21 5 chr3 113032048 113037854 -46561929 + L1Md_F3 LINE L1 422 6283 -301 4 1447 1302 34 0 11 chr3 113037844 113038021 -46561762 + L1Md_F3 LINE L1 6406 6580 -2 4 1447 288 274 138 28 chr3 113038436 113038545 -46561238 + MLT1I LTR MaLR 12 132 -279 4 1447 1720 192 11 3 chr3 113038722 113039104 -46560679 - L1_Mm LINE L1 -524 5359 4975 4 1447 2967 52 3 15 chr3 113039104 113039494 -46560289 - L1Md_F3 LINE L1 -2 6582 6198 4 1447 2283 116 17 31 chr3 113039560 113039915 -46559868 - IAPEY2_LTR LTR ERVK -3 354 5 4 1447 18495 93 5 6 chr3 113039919 113042632 -46557151 - IAPEy-int LTR ERVK 0 7513 4804 4 1447 5812 136 7 38 chr3 113042632 113043713 -46556070 - IAPEy-int LTR ERVK -6455 1058 12 4 1447 230 122 60 20 chr3 113043716 113043731 -46556052 - IAPEY_LTR LTR ERVK -281 104 87 4 1447 2359 98 14 44 chr3 113043731 113044096 -46555687 - IAPEY2_LTR LTR ERVK -3 354 1 4 1447 230 122 60 20 chr3 113044096 113044130 -46555653 - IAPEY_LTR LTR ERVK -299 86 53 4 1447 1178 83 18 0 chr3 113044275 113044443 -46555340 + L1Md_F2 LINE L1 6400 6570 -12 4 1447 549 0 0 0 chr3 113044443 113044504 -46555279 + (GAA)n Simple_repeat Simple_repeat 1 61 0 4 1447 1114 92 11 6 chr3 113044504 113044678 -46555105 + (GAAA)n Simple_repeat Simple_repeat 3 177 0 4 1447 868 177 37 4 chr3 113045013 113045265 -46554518 - L1_Mur3 LINE L1 -4517 1363 1104 5 1447 1932 238 61 28 chr3 113045263 113045841 -46553942 - Lx2B LINE L1 0 7000 6404 5 1447 276 167 0 0 chr3 113045833 113045887 -46553896 + Lx5 LINE L1 5598 5651 -1399 5 1447 363 162 0 39 chr3 113045886 113045963 -46553820 - L1_Mur3 LINE L1 -6612 1116 1043 5 1447 552 335 9 73 chr3 113045977 113046325 -46553458 - L1_Mur3 LINE L1 -7169 559 239 5 1447 5559 125 4 13 chr3 113046325 113047058 -46552725 - Lx2 LINE L1 -6 6991 6269 5 1447 6212 114 48 11 chr3 113047058 113048004 -46551779 + RLTR13C1 LTR ERVK 3 983 0 5 1447 5559 125 4 13 chr3 113048004 113048111 -46551672 - Lx2 LINE L1 -729 6268 6159 5 1447 552 335 9 73 chr3 113048111 113048200 -46551583 - L1_Mur3 LINE L1 -7490 238 150 5 1447 2237 196 51 14 chr3 113048908 113049416 -46550367 - RLTR11A2 LTR ERVK 0 527 1 5 1447 281 219 93 43 chr3 113049494 113049656 -46550127 + Lx7 LINE L1 7527 7696 0 5 1447 3008 71 8 2 chr3 113051407 113051801 -46547982 + MTA_Mm LTR MaLR 1 396 0 5 1447 204 125 0 0 chr3 113052375 113052407 -46547376 + (TA)n Simple_repeat Simple_repeat 2 33 0 5 1447 3264 8 0 3 chr3 113052434 113052804 -46546979 + L1Md_A LINE L1 6213 6581 -1 5 1447 759 224 0 0 chr3 113052810 113052989 -46546794 + (TATATG)n Simple_repeat Simple_repeat 2 180 0 6 1447 1125 62 0 0 chr3 113053580 113053726 -46546057 + (TTCTG)n Simple_repeat Simple_repeat 5 150 0 6 1447 437 295 8 23 chr3 113053726 113053858 -46545925 - B1_Mm SINE Alu -12 135 6 6 1447 25 51 0 0 chr3 113055060 113055099 -46544684 + AT_rich Low_complexity Low_complexity 1 39 0 6 1447 25 75 0 0 chr3 113057097 113057150 -46542633 + AT_rich Low_complexity Low_complexity 1 53 0 6 1447 3003 146 8 17 chr3 113057607 113058138 -46541645 + Lx2B LINE L1 6471 6996 -4 6 1447 487 291 39 13 chr3 113058250 113058403 -46541380 + Lx9 LINE L1 7272 7428 -216 6 1447 426 261 0 77 chr3 113058507 113058702 -46541081 + Lx9 LINE L1 7457 7636 -8 6 1447 336 103 0 0 chr3 113059209 113059267 -46540516 + (TC)n Simple_repeat Simple_repeat 1 58 0 6 1447 1664 155 15 39 chr3 113060460 113060796 -46538987 + Lx LINE L1 6319 6646 -8 6 1447 21742 90 1 29 chr3 113062453 113065496 -46534287 + MMERVK10C-int LTR ERVK 4623 7581 0 6 1447 1816 166 0 7 chr3 113065496 113065806 -46533977 + RLTR10E LTR ERVK 1 308 -3 6 1447 594 180 0 0 chr3 113065809 113065931 -46533852 - L1_Mur3 LINE L1 -2166 3711 3590 7 1447 6672 169 21 36 chr3 113065935 113067290 -46532493 + L1_Mm LINE L1 4393 5726 -157 7 1447 35059 45 1 3 chr3 113067279 113072528 -46527255 + L1Md_T LINE L1 256 5588 -298 7 1447 8411 29 2 1 chr3 113072529 113073524 -46526259 + L1Md_T LINE L1 5590 6585 0 7 1447 2930 46 0 0 chr3 113073524 113073875 -46525908 + L1_Mm LINE L1 5294 5644 -239 7 1447 4917 54 0 3 chr3 113073875 113074491 -46525292 + L1Md_F3 LINE L1 4973 5586 -297 7 1447 7878 42 12 5 chr3 113074491 113075481 -46524302 + L1Md_F3 LINE L1 5587 6583 -1 7 1447 1831 197 11 3 chr3 113075481 113075863 -46523920 + L1_Mm LINE L1 4975 5359 -524 7 1447 263 294 134 27 chr3 113076040 113076152 -46523631 - MLT1I LTR MaLR -279 132 9 7 1447 3091 42 3 5 chr3 113076564 113076947 -46522836 - L1Md_F2 LINE L1 -3 6579 6198 7 1447 1118 88 25 0 chr3 113077148 113077308 -46522475 + L1Md_F2 LINE L1 6400 6563 -19 7 1447 258 32 0 0 chr3 113077308 113077339 -46522444 + (TAA)n Simple_repeat Simple_repeat 3 33 0 7 1447 967 166 44 0 chr3 113077681 113077916 -46521867 - L1_Mur3 LINE L1 -4517 1363 1119 7 1447 2163 244 60 13 chr3 113077957 113078510 -46521273 - Lx2B LINE L1 -18 6982 6404 8 1447 294 167 0 0 chr3 113078502 113078556 -46521227 + Lx5 LINE L1 5598 5651 -1399 8 1447 336 209 51 25 chr3 113078555 113078673 -46521110 - L1_Mur3 LINE L1 -6612 1116 996 7 1447 597 334 48 67 chr3 113078642 113078991 -46520792 - L1_Mur3 LINE L1 -6979 749 263 7 1447 5362 132 5 13 chr3 113078991 113079723 -46520060 - Lx2 LINE L1 -6 6991 6269 8 1447 6170 115 48 11 chr3 113079723 113080669 -46519114 + RLTR13C1 LTR ERVK 3 983 0 8 1447 5362 132 5 13 chr3 113080669 113080776 -46519007 - Lx2 LINE L1 -729 6268 6159 8 1447 461 336 42 63 chr3 113080776 113080914 -46518869 - L1_Mur3 LINE L1 -7248 480 392 7 1447 2283 194 51 14 chr3 113081573 113082081 -46517702 - RLTR11A2 LTR ERVK 0 527 1 8 1447 198 71 0 0 chr3 113082159 113082187 -46517596 + (TTA)n Simple_repeat Simple_repeat 2 29 0 8 1447 254 219 104 52 chr3 113082187 113082322 -46517461 + Lx7 LINE L1 7555 7696 0 8 1447 3002 74 8 2 chr3 113084074 113084468 -46515315 + MTA_Mm LTR MaLR 1 396 0 8 1447 185 108 0 26 chr3 113084688 113084726 -46515057 + (TAAAAA)n Simple_repeat Simple_repeat 2 38 0 8 1447 278 307 51 80 chr3 113084979 113085117 -46514666 + RMER12 LTR ERVK 713 846 -476 8 1447 444 153 0 0 chr3 113085123 113085208 -46514575 + (TA)n Simple_repeat Simple_repeat 2 86 0 9 1447 720 229 0 0 chr3 113085335 113085562 -46514221 + (TA)n Simple_repeat Simple_repeat 1 227 0 9 1447 1389 61 0 0 chr3 113086152 113086332 -46513451 + (TTCTG)n Simple_repeat Simple_repeat 1 180 0 9 1447 470 306 7 7 chr3 113086332 113086470 -46513313 - B1_Mur2 SINE Alu -6 143 6 9 1447 25 51 0 0 chr3 113087672 113087711 -46512072 + AT_rich Low_complexity Low_complexity 1 39 0 9 1447 25 75 0 0 chr3 113089709 113089762 -46510021 + AT_rich Low_complexity Low_complexity 1 53 0 9 1447 2977 148 8 17 chr3 113090219 113090750 -46509033 + Lx2B LINE L1 6471 6996 -4 9 1447 487 291 39 13 chr3 113090862 113091015 -46508768 + Lx9 LINE L1 7272 7428 -216 9 1447 426 261 0 77 chr3 113091119 113091314 -46508469 + Lx9 LINE L1 7457 7636 -8 9 1447 336 103 0 0 chr3 113091821 113091879 -46507904 + (TC)n Simple_repeat Simple_repeat 1 58 0 9 1447 1664 155 15 39 chr3 113093072 113093408 -46506375 + Lx LINE L1 6319 6646 -8 9 1447 21712 90 1 29 chr3 113095065 113098108 -46501675 + MMERVK10C-int LTR ERVK 4623 7581 0 1 1447 1803 169 0 7 chr3 113098108 113098418 -46501365 + RLTR10E LTR ERVK 1 308 -3 1 1447 594 180 0 0 chr3 113098421 113098543 -46501240 - L1_Mur3 LINE L1 -2166 3711 3590 1 1447 6672 169 21 36 chr3 113098547 113099902 -46499881 + L1_Mm LINE L1 4393 5726 -157 1 1447 35013 46 1 3 chr3 113099891 113105140 -46494643 + L1Md_T LINE L1 256 5588 -298 1 1447 8223 37 2 2 chr3 113105141 113106137 -46493646 + L1Md_T LINE L1 5590 6585 0 1 1447 2905 48 0 0 chr3 113106137 113106488 -46493295 + L1_Mm LINE L1 5294 5644 -239 1 1447 4905 55 0 3 chr3 113106488 113107104 -46492679 + L1Md_F3 LINE L1 4973 5586 -297 1 1447 7913 41 12 4 chr3 113107104 113108093 -46491690 + L1Md_F3 LINE L1 5587 6583 -1 1 1447 1831 197 11 3 chr3 113108093 113108475 -46491308 + L1_Mm LINE L1 4975 5359 -524 1 1447 263 294 134 27 chr3 113108652 113108764 -46491019 - MLT1I LTR MaLR -279 132 9 1 1447 3091 42 3 5 chr3 113109176 113109559 -46490224 - L1Md_F2 LINE L1 -3 6579 6198 1 1447 1118 88 25 0 chr3 113109760 113109920 -46489863 + L1Md_F2 LINE L1 6400 6563 -19 1 1447 258 32 0 0 chr3 113109920 113109951 -46489832 + (TAA)n Simple_repeat Simple_repeat 3 33 0 1 1447 967 166 44 0 chr3 113110293 113110528 -46489255 - L1_Mur3 LINE L1 -4517 1363 1119 1 1447 2083 250 38 11 chr3 113110569 113111122 -46488661 - Lx3C LINE L1 -2 6974 6407 1 1447 294 167 0 0 chr3 113111114 113111168 -46488615 + Lx5 LINE L1 5598 5651 -1399 1 1447 336 209 51 25 chr3 113111167 113111285 -46488498 - L1_Mur3 LINE L1 -6612 1116 996 1 1447 597 341 10 10 chr3 113111254 113111553 -46488230 - L1_Mur3 LINE L1 -7167 561 263 1 1447 5362 132 5 13 chr3 113111603 113112335 -46487448 - Lx2 LINE L1 -6 6991 6261 1 1447 6170 115 48 11 chr3 113112335 113113281 -46486502 + RLTR13C1 LTR ERVK 3 983 0 1 1447 5362 132 5 13 chr3 113113281 113113388 -46486395 - Lx2 LINE L1 -729 6268 6159 1 1447 461 332 57 82 chr3 113113388 113113477 -46486306 - L1_Mur3 LINE L1 -7248 464 376 1 1447 2283 194 51 14 chr3 113114185 113114693 -46485090 - RLTR11A2 LTR ERVK 0 527 1 1 1447 198 71 0 0 chr3 113114771 113114799 -46484984 + (TTA)n Simple_repeat Simple_repeat 2 29 0 1 1447 254 219 104 52 chr3 113114799 113114934 -46484849 + Lx7 LINE L1 7555 7696 0 1 1448 3002 74 8 2 chr3 113116686 113117080 -46482703 + MTA_Mm LTR MaLR 1 396 0 1 1448 185 108 0 26 chr3 113117300 113117338 -46482445 + (TAAAAA)n Simple_repeat Simple_repeat 2 38 0 1 1448 810 184 0 0 chr3 113117654 113117828 -46481955 + (TA)n Simple_repeat Simple_repeat 2 175 0 1 1448 649 218 0 16 chr3 113117982 113118164 -46481619 + (TATATG)n Simple_repeat Simple_repeat 2 180 0 1 1448 1389 61 0 0 chr3 113118762 113118942 -46480841 + (TTCTG)n Simple_repeat Simple_repeat 1 180 0 1 1448 444 311 8 8 chr3 113118942 113119075 -46480708 - B1_Mur2 SINE Alu -11 138 6 1 1448 25 51 0 0 chr3 113120277 113120316 -46479467 + AT_rich Low_complexity Low_complexity 1 39 0 1 1448 25 75 0 0 chr3 113122313 113122366 -46477417 + AT_rich Low_complexity Low_complexity 1 53 0 1 1448 3060 144 8 15 chr3 113122823 113123353 -46476430 + Lx2B LINE L1 6471 6996 -4 1 1448 487 291 39 13 chr3 113123465 113123618 -46476165 + Lx9 LINE L1 7272 7428 -216 1 1448 426 261 0 77 chr3 113123722 113123917 -46475866 + Lx9 LINE L1 7457 7636 -8 1 1448 336 103 0 0 chr3 113124424 113124482 -46475301 + (TC)n Simple_repeat Simple_repeat 1 58 0 1 1448 1664 155 15 39 chr3 113125675 113126011 -46473772 + Lx LINE L1 6319 6646 -8 1 1448 21751 90 1 29 chr3 113127668 113130711 -46469072 + MMERVK10C-int LTR ERVK 4623 7581 0 1 1448 1784 172 0 7 chr3 113130711 113131021 -46468762 + RLTR10E LTR ERVK 1 308 -3 1 1448 594 180 0 0 chr3 113131024 113131146 -46468637 - L1_Mur3 LINE L1 -2166 3711 3590 1 1448 6672 169 21 36 chr3 113131150 113132505 -46467278 + L1_Mm LINE L1 4393 5726 -157 1 1448 34977 47 1 3 chr3 113132494 113137741 -46462042 + L1Md_T LINE L1 256 5588 -298 1 1448 8223 37 2 2 chr3 113137742 113138738 -46461045 + L1Md_T LINE L1 5590 6585 0 1 1448 2905 48 0 0 chr3 113138738 113139089 -46460694 + L1_Mm LINE L1 5294 5644 -239 1 1448 4905 55 0 3 chr3 113139089 113139705 -46460078 + L1Md_F3 LINE L1 4973 5586 -297 1 1448 7893 42 12 5 chr3 113139705 113140695 -46459088 + L1Md_F3 LINE L1 5587 6583 -1 1 1448 1831 197 11 3 chr3 113140695 113141077 -46458706 + L1_Mm LINE L1 4975 5359 -524 1 1448 263 294 134 27 chr3 113141254 113141366 -46458417 - MLT1I LTR MaLR -279 132 9 1 1448 3091 42 3 5 chr3 113141778 113142161 -46457622 - L1Md_F2 LINE L1 -3 6579 6198 1 1448 1118 88 25 0 chr3 113142362 113142522 -46457261 + L1Md_F2 LINE L1 6400 6563 -19 1 1448 258 32 0 0 chr3 113142522 113142553 -46457230 + (TAA)n Simple_repeat Simple_repeat 3 33 0 1 1448 967 166 44 0 chr3 113142895 113143130 -46456653 - L1_Mur3 LINE L1 -4517 1363 1119 1 1448 2163 244 60 13 chr3 113143171 113143724 -46456059 - Lx2B LINE L1 -18 6982 6404 1 1448 294 167 0 0 chr3 113143716 113143770 -46456013 + Lx5 LINE L1 5598 5651 -1399 1 1448 336 209 51 25 chr3 113143769 113143887 -46455896 - L1_Mur3 LINE L1 -6612 1116 996 1 1448 597 334 48 67 chr3 113143856 113144205 -46455578 - L1_Mur3 LINE L1 -6979 733 247 1 1448 5362 132 5 13 chr3 113144205 113144937 -46454846 - Lx2 LINE L1 -6 6991 6269 1 1448 6170 115 48 11 chr3 113144937 113145883 -46453900 + RLTR13C1 LTR ERVK 3 983 0 1 1448 5362 132 5 13 chr3 113145883 113145990 -46453793 - Lx2 LINE L1 -729 6268 6159 1 1448 461 336 42 63 chr3 113145990 113146128 -46453655 - L1_Mur3 LINE L1 -7248 464 376 1 1448 2283 194 51 14 chr3 113146787 113147295 -46452488 - RLTR11A2 LTR ERVK 0 527 1 1 1448 198 71 0 0 chr3 113147373 113147401 -46452382 + (TTA)n Simple_repeat Simple_repeat 2 29 0 1 1448 254 219 104 52 chr3 113147401 113147536 -46452247 + Lx7 LINE L1 7555 7696 0 1 1448 3002 74 8 2 chr3 113149286 113149680 -46450103 + MTA_Mm LTR MaLR 1 396 0 1 1448 185 108 0 26 chr3 113149900 113149938 -46449845 + (TAAAAA)n Simple_repeat Simple_repeat 2 38 0 1 1448 810 184 0 0 chr3 113150254 113150428 -46449355 + (TA)n Simple_repeat Simple_repeat 2 175 0 1 1448 649 218 0 16 chr3 113150582 113150764 -46449019 + (TATATG)n Simple_repeat Simple_repeat 2 180 0 1 1448 1389 61 0 0 chr3 113151362 113151542 -46448241 + (TTCTG)n Simple_repeat Simple_repeat 1 180 0 1 1448 439 321 7 7 chr3 113151542 113151680 -46448103 - B1_Mur2 SINE Alu -6 143 6 1 1448 25 51 0 0 chr3 113152882 113152921 -46446862 + AT_rich Low_complexity Low_complexity 1 39 0 1 1448 25 75 0 0 chr3 113154918 113154971 -46444812 + AT_rich Low_complexity Low_complexity 1 53 0 1 1448 3003 146 8 17 chr3 113155428 113155959 -46443824 + Lx2B LINE L1 6471 6996 -4 1 1448 487 291 39 13 chr3 113156071 113156224 -46443559 + Lx9 LINE L1 7272 7428 -216 1 1448 426 261 0 77 chr3 113156328 113156523 -46443260 + Lx9 LINE L1 7457 7636 -8 1 1448 336 103 0 0 chr3 113157030 113157088 -46442695 + (TC)n Simple_repeat Simple_repeat 1 58 0 1 1448 1664 155 15 39 chr3 113158281 113158617 -46441166 + Lx LINE L1 6319 6646 -8 1 1448 21737 90 1 29 chr3 113160274 113163317 -46436466 + MMERVK10C-int LTR ERVK 4623 7581 0 1 1448 1784 172 0 7 chr3 113163317 113163627 -46436156 + RLTR10E LTR ERVK 1 308 -3 1 1448 594 180 0 0 chr3 113163630 113163752 -46436031 - L1_Mur3 LINE L1 -2166 3711 3590 1 1448 6672 169 21 36 chr3 113163756 113165111 -46434672 + L1_Mm LINE L1 4393 5726 -157 1 1448 33195 48 1 1 chr3 113165100 113170347 -46429436 + L1Md_T LINE L1 256 5588 -298 1 1448 8259 37 2 2 chr3 113170348 113171344 -46428439 + L1Md_T LINE L1 5590 6585 0 1 1448 2773 48 0 0 chr3 113171344 113171695 -46428088 + L1_Mm LINE L1 5294 5644 -239 1 1448 4684 55 0 3 chr3 113171695 113172311 -46427472 + L1Md_F3 LINE L1 4973 5586 -297 1 1448 7934 41 12 4 chr3 113172311 113173300 -46426483 + L1Md_F3 LINE L1 5587 6583 -1 1 1448 1714 197 11 3 chr3 113173300 113173682 -46426101 + L1_Mm LINE L1 4975 5359 -524 1 1448 263 294 134 27 chr3 113173859 113173971 -46425812 - MLT1I LTR MaLR -279 132 9 1 1448 3111 42 3 5 chr3 113174383 113174766 -46425017 - L1Md_F2 LINE L1 -3 6579 6198 1 1448 1126 88 25 0 chr3 113174967 113175127 -46424656 + L1Md_F2 LINE L1 6400 6563 -19 1 1448 258 32 0 0 chr3 113175127 113175158 -46424625 + (TAA)n Simple_repeat Simple_repeat 3 33 0 1 1448 906 166 44 0 chr3 113175500 113175735 -46424048 - L1_Mur3 LINE L1 -4517 1363 1119 1 1448 1973 245 60 13 chr3 113175776 113176329 -46423454 - Lx2B LINE L1 -18 6982 6404 1 1448 276 167 0 0 chr3 113176321 113176375 -46423408 + Lx5 LINE L1 5598 5651 -1399 1 1448 375 162 0 13 chr3 113176374 113176449 -46423334 - L1_Mur3 LINE L1 -6612 1116 1043 1 1448 508 340 8 65 chr3 113176463 113176810 -46422973 - L1_Mur3 LINE L1 -7049 679 263 1 1448 5400 132 5 13 chr3 113176810 113177542 -46422241 - Lx2 LINE L1 -6 6991 6269 1 1448 6156 115 48 11 chr3 113177542 113178488 -46421295 + RLTR13C1 LTR ERVK 3 983 0 1 1448 5400 132 5 13 chr3 113178488 113178595 -46421188 - Lx2 LINE L1 -729 6268 6159 1 1448 380 339 6 95 chr3 113178595 113178684 -46421099 - L1_Mur3 LINE L1 -7248 480 392 1 1448 2270 194 51 14 chr3 113179392 113179900 -46419883 - RLTR11A2 LTR ERVK 0 527 1 1 1448 198 71 0 0 chr3 113179978 113180006 -46419777 + (TTA)n Simple_repeat Simple_repeat 2 29 0 1 1448 24 77 0 0 chr3 113230691 113230743 -46369040 + AT_rich Low_complexity Low_complexity 1 52 0 1 1448 3016 144 8 19 chr3 113231201 113231733 -46368050 + Lx2B LINE L1 6471 6996 -4 1 1448 455 305 39 13 chr3 113231845 113231998 -46367785 + Lx9 LINE L1 7272 7428 -216 1 1448 267 232 0 0 chr3 113232091 113232173 -46367610 + (TA)n Simple_repeat Simple_repeat 1 82 0 1 1448 26 50 0 0 chr3 113232273 113232313 -46367470 + AT_rich Low_complexity Low_complexity 1 40 0 1 1448 446 128 11 0 chr3 113232784 113232878 -46366905 + (TC)n Simple_repeat Simple_repeat 1 95 0 1 1448 1831 145 12 36 chr3 113234073 113234410 -46365373 + Lx LINE L1 6319 6647 -7 1 1448 24 73 0 35 chr3 113237235 113237320 -46362463 + AT_rich Low_complexity Low_complexity 1 82 0 1 1448 29 0 0 0 chr3 113237470 113237499 -46362284 + AT_rich Low_complexity Low_complexity 1 29 0 1 1448 441 0 0 0 chr3 113237654 113237703 -46362080 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 1448 374 304 25 59 chr3 113238432 113238551 -46361232 + ORR1E LTR MaLR 1 115 -244 1 1448 1213 34 0 20 chr3 113238730 113238741 -46361042 - B1_Mm SINE Alu 0 147 139 1 1448 391 33 50 0 chr3 113238741 113238801 -46360982 + (TTTG)n Simple_repeat Simple_repeat 2 64 0 1 1448 1213 34 0 20 chr3 113238801 113238939 -46360844 - B1_Mm SINE Alu -9 138 1 1 1448 1075 311 112 23 chr3 113239970 113240499 -46359284 + Lx8 LINE L1 6521 7096 -377 1 1448 238 356 0 0 chr3 113240655 113240728 -46359055 + ID4_ SINE ID 5 77 -6 1 1448 216 236 18 0 chr3 113240782 113240837 -46358946 + (TA)n Simple_repeat Simple_repeat 2 57 0 1 1448 236 256 23 0 chr3 113241020 113241106 -46358677 + L1MA5 LINE L1 6190 6277 -23 1 1448 216 0 0 0 chr3 113241436 113241460 -46358323 + (TG)n Simple_repeat Simple_repeat 1 24 0 1 1448 3121 193 12 7 chr3 113241688 113242271 -46357512 - Lx2B LINE L1 -5 6995 6410 1 1448 345 238 0 0 chr3 113242304 113242388 -46357395 - MurERV4-int LTR ERVK -2363 2897 2814 1 1448 22 56 0 0 chr3 113242392 113242428 -46357355 + AT_rich Low_complexity Low_complexity 1 36 0 1 1448 189 107 0 0 chr3 113243044 113243072 -46356711 + (TTTA)n Simple_repeat Simple_repeat 3 30 0 1 1448 913 131 61 28 chr3 113243077 113243258 -46356525 - Lx2B LINE L1 -19 6981 6795 2 1448 308 330 102 0 chr3 113243353 113243471 -46356312 + MTE2b LTR MaLR 9 138 -241 2 1448 293 126 22 33 chr3 113243493 113243583 -46356200 + (TTTG)n Simple_repeat Simple_repeat 2 90 0 2 1448 609 189 36 0 chr3 113243694 113243805 -46355978 + PB1D9 SINE Alu 5 119 -1 2 1448 504 333 75 16 chr3 113243803 113244056 -46355727 + MT2A LTR ERVL 262 529 -4 2 1448 294 283 10 20 chr3 113244068 113244169 -46355614 + GA-rich Low_complexity Low_complexity 1 100 0 2 1448 1533 51 0 5 chr3 113244344 113244541 -46355242 + L1_Mus1 LINE L1 6372 6567 0 2 1448 420 20 0 0 chr3 113244665 113244714 -46355069 + (CA)n Simple_repeat Simple_repeat 1 49 0 2 1448 1324 248 90 3 chr3 113245744 113246100 -46353683 - Lx9 LINE L1 -148 7496 7110 2 1448 351 96 0 0 chr3 113246103 113246155 -46353628 + (TTA)n Simple_repeat Simple_repeat 1 52 0 2 22 5184 136 28 15 chr3 113246155 113247001 -46352782 - Lx2A1 LINE L1 -15 6993 6137 2 1449 1132 247 219 67 chr3 113247204 113247786 -46351997 - L1_Mur2 LINE L1 -5963 749 111 2 1449 1172 262 78 24 chr3 113247802 113248376 -46351407 + L1_Mur3 LINE L1 3987 4591 -1289 2 1449 679 197 30 69 chr3 113248495 113248697 -46351086 + RLTR31_Mur LTR ERVK 1 194 -359 2 1449 1035 70 29 6 chr3 113248705 113248877 -46350906 + (TTCTC)n Simple_repeat Simple_repeat 5 180 0 2 1449 435 83 0 0 chr3 113248877 113248937 -46350846 + (TTTC)n Simple_repeat Simple_repeat 2 61 0 2 1449 1268 117 10 0 chr3 113249072 113249277 -46350506 - L1_Mus4 LINE L1 0 6636 6430 2 1449 1335 228 36 23 chr3 113249285 113249586 -46350197 + RLTR31_Mur LTR ERVK 233 537 -16 2 1449 5148 176 25 2 chr3 113249621 113251042 -46348741 + L1_Mur1 LINE L1 866 2324 -3562 2 1449 1035 183 8 68 chr3 113251051 113251285 -46348498 + Lx2B LINE L1 6778 6997 -3 2 1449 2300 274 153 12 chr3 113251760 113252509 -46347274 + Lx6 LINE L1 6604 7457 -3 2 1449 678 215 7 0 chr3 113253955 113254104 -46345679 + Lx6 LINE L1 7135 7284 -176 2 1449 740 11 11 0 chr3 113254382 113254471 -46345312 + (GGGA)n Simple_repeat Simple_repeat 4 93 0 2 1449 976 262 51 43 chr3 113254944 113255199 -46344584 + Lx5 LINE L1 6791 7047 -3 2 1449 1017 278 132 16 chr3 113255208 113255712 -46344071 + Lx8 LINE L1 5328 5918 -1778 2 1449 6385 159 26 32 chr3 113255902 113257075 -46342708 - Lx4B LINE L1 -246 6812 5648 2 1449 1798 179 9 21 chr3 113257073 113257405 -46342378 + Lx4B LINE L1 5313 5640 -237 2 1449 517 246 22 80 chr3 113257495 113257632 -46342151 + B1_Mur1 SINE Alu 1 129 -20 2 1449 1188 346 19 22 chr3 113257635 113258218 -46341565 + Lx8 LINE L1 6747 7327 -146 2 1449 775 150 7 13 chr3 113258227 113258382 -46341401 + (TAGA)n Simple_repeat Simple_repeat 4 157 0 2 1449 23 0 0 0 chr3 113258888 113258911 -46340872 + AT_rich Low_complexity Low_complexity 1 23 0 2 1449 212 172 16 49 chr3 113259236 113259297 -46340486 + (CATATA)n Simple_repeat Simple_repeat 5 63 0 2 1449 474 49 0 0 chr3 113259297 113259358 -46340425 + (TAGA)n Simple_repeat Simple_repeat 4 64 0 2 1449 2893 68 0 3 chr3 113259403 113259772 -46340011 - L1Md_F2 LINE L1 -214 6368 6001 2 1449 291 54 0 0 chr3 113259769 113259806 -46339977 + L1_Mus1 LINE L1 6346 6382 -185 2 1449 416 111 0 0 chr3 113259806 113259878 -46339905 + L1Md_F2 LINE L1 6510 6581 -1 2 1449 1308 87 15 30 chr3 113259887 113260089 -46339694 + L1Md_F2 LINE L1 6384 6582 0 2 1449 882 304 95 3 chr3 113260089 113260383 -46339400 + ORR1D2 LTR MaLR 50 370 0 2 1449 2125 263 45 7 chr3 113261695 113262241 -46337542 + RMER1B Other Other 2 531 -535 2 1449 1254 165 71 29 chr3 113262254 113262534 -46337249 + RMER1B Other Other 771 1062 -4 2 1449 181 269 77 0 chr3 113262572 113262624 -46337159 + MIR SINE MIR 101 156 -106 2 1449 2621 129 52 9 chr3 113262817 113263255 -46336528 - Lx LINE L1 -3 6651 6195 2 1449 27 49 0 0 chr3 113263809 113263850 -46335933 + AT_rich Low_complexity Low_complexity 1 41 0 2 1449 325 143 0 0 chr3 113263890 113263946 -46335837 - L1_Mus4 LINE L1 -513 6123 6075 2 1449 3208 120 34 16 chr3 113263946 113264445 -46335338 + Lx LINE L1 6147 6654 0 2 1449 30 0 0 0 chr3 113265719 113265749 -46334034 + AT_rich Low_complexity Low_complexity 1 30 0 2 1449 4626 126 32 0 chr3 113266693 113267402 -46332381 + Lx2 LINE L1 6266 6997 0 2 1449 221 109 62 0 chr3 113268065 113268129 -46331654 + (TA)n Simple_repeat Simple_repeat 2 69 0 2 1449 2703 94 2 52 chr3 113268269 113268693 -46331090 + RLTR9D LTR ERVK 1 403 0 2 1449 3969 240 90 76 chr3 113268695 113269080 -46330703 + ETnERV2-int LTR ERVK 3 386 -2928 2 1449 423 38 0 0 chr3 113269080 113269133 -46330650 + (TAAAA)n Simple_repeat Simple_repeat 4 56 0 2 1449 5761 176 74 54 chr3 113269133 113271188 -46328595 + ETnERV2-int LTR ERVK 293 3448 -3958 2 1449 4074 147 35 26 chr3 113271443 113272314 -46327469 + ETnERV2-int LTR ERVK 3440 4864 -2380 2 1449 369 0 0 0 chr3 113274408 113274449 -46325334 + (CA)n Simple_repeat Simple_repeat 2 42 0 2 1449 520 177 8 8 chr3 113274600 113274725 -46325058 + L1_Mur3 LINE L1 4004 4128 -1752 2 1449 21 36 0 0 chr3 113274730 113274758 -46325025 + AT_rich Low_complexity Low_complexity 1 28 0 2 1449 22 0 0 0 chr3 113274822 113274844 -46324939 + AT_rich Low_complexity Low_complexity 1 22 0 2 1449 1762 301 107 18 chr3 113274859 113275589 -46324194 + Lx8 LINE L1 6202 6996 -477 2 1449 192 234 0 0 chr3 113275800 113275847 -46323936 + (TA)n Simple_repeat Simple_repeat 2 48 0 2 1449 450 79 0 0 chr3 113276075 113276138 -46323645 + (GA)n Simple_repeat Simple_repeat 1 63 0 2 1449 23 0 0 0 chr3 113277355 113277378 -46322405 + AT_rich Low_complexity Low_complexity 1 23 0 2 1449 3476 173 43 1 chr3 113277979 113278651 -46321132 - L1_Mur3 LINE L1 -2797 3083 2384 2 1449 2210 193 19 4 chr3 113278649 113279128 -46320655 - L1_Mur3 LINE L1 -6384 1344 859 2 1449 664 260 49 9 chr3 113279122 113279347 -46320436 - L1_Mur3 LINE L1 -7167 561 328 2 1449 315 214 0 0 chr3 113281800 113281870 -46317913 + (TATATG)n Simple_repeat Simple_repeat 1 70 0 2 1449 665 386 60 38 chr3 113281870 113282317 -46317466 + MTE-int LTR MaLR 1062 1518 -62 2 1449 293 272 113 83 chr3 113282471 113282738 -46317045 + MTEa LTR MaLR 97 377 -2 2 1449 928 319 80 24 chr3 113283696 113284328 -46315455 - L1_Rod LINE L1 -15 5832 5151 2 1449 270 0 0 0 chr3 113284328 113284358 -46315425 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 2 1449 621 332 134 23 chr3 113284358 113284408 -46315375 - L1_Rod LINE L1 -736 5150 5102 2 1449 467 295 32 37 chr3 113285714 113285904 -46313879 + Lx9 LINE L1 7273 7461 -183 2 1449 320 164 15 0 chr3 113286090 113286157 -46313626 + GA-rich Low_complexity Low_complexity 3 70 0 2 1449 441 335 62 14 chr3 113286854 113287063 -46312720 - Lx8 LINE L1 -560 6913 6695 2 1449 663 252 119 6 chr3 113287177 113287453 -46312330 - L1_Rod LINE L1 -11 5836 5532 2 1449 4716 92 13 3 chr3 113287451 113288140 -46311643 + Lx3_Mus LINE L1 4762 5457 -429 2 1449 406 172 0 0 chr3 113288142 113288206 -46311577 + Lx3_Mus LINE L1 5647 5710 -1299 2 1449 317 338 52 0 chr3 113288205 113288341 -46311442 - L1_Mm LINE L1 -329 5554 5412 2 1449 5305 70 21 3 chr3 113288343 113289438 -46310345 + L1_Mus2 LINE L1 5179 6291 -275 2 1449 1526 31 5 15 chr3 113289442 113289639 -46310144 - MTB LTR MaLR 0 400 206 2 1449 2088 30 107 66 chr3 113289627 113289658 -46310125 - MT2C_Mm LTR ERVL -145 330 300 2 1449 924 124 0 0 chr3 113289658 113289836 -46309947 + (GA)n Simple_repeat Simple_repeat 1 178 0 2 1449 2088 30 107 66 chr3 113289836 113290121 -46309662 - MT2C_Mm LTR ERVL -176 299 1 2 1449 2052 64 0 0 chr3 113290121 113290387 -46309396 + L1_Mus2 LINE L1 6301 6566 -1 2 1449 876 307 109 51 chr3 113290402 113291106 -46308677 - L1_Mur3 LINE L1 -464 5416 4672 2 1449 5137 212 63 9 chr3 113291497 113292661 -46307122 - Lx9 LINE L1 -25 7619 6394 2 1449 952 229 42 81 chr3 113292669 113293113 -46306670 - ORR1D1 LTR MaLR 0 374 15 2 1449 357 24 0 0 chr3 113293124 113293166 -46306617 + (CAAAA)n Simple_repeat Simple_repeat 1 42 0 2 1449 311 208 78 0 chr3 113293169 113293246 -46306537 - Lx9 LINE L1 -1249 6395 6313 2 1449 1303 213 88 48 chr3 113293373 113293864 -46305919 - Lx9 LINE L1 -1601 6043 5501 2 1449 6898 234 154 46 chr3 113294434 113297362 -46302421 - Lx9 LINE L1 -350 5497 2254 2 1449 2171 173 33 14 chr3 113297356 113297778 -46302005 + Lx2B LINE L1 6548 6977 -23 2 1449 16400 157 17 12 chr3 113298602 113299132 -46300651 + Lx LINE L1 2916 3435 -2448 2 1449 2314 77 60 27 chr3 113299132 113299467 -46300316 + ORR1A1 LTR MaLR 1 346 0 2 1449 16400 142 35 10 chr3 113299467 113302608 -46297175 + Lx LINE L1 3436 6650 -4 2 1449 860 210 63 40 chr3 113303231 113303454 -46296329 + ORR1B2 LTR MaLR 3 230 -137 2 1449 4268 166 56 53 chr3 113303637 113303787 -46295996 + RLTR22_Mur LTR ERVK 3 175 -1673 2 1449 384 59 0 0 chr3 113303787 113303838 -46295945 + (TA)n Simple_repeat Simple_repeat 1 51 0 2 1449 4268 166 56 53 chr3 113303838 113304675 -46295108 + RLTR22_Mur LTR ERVK 176 993 -855 2 1449 1090 198 61 9 chr3 113304818 113305057 -46294726 + RLTR22_Mur LTR ERVK 1590 1822 -26 2 1449 822 44 150 0 chr3 113305064 113305177 -46294606 + B1_Mm SINE Alu 2 131 -16 2 1449 330 138 0 0 chr3 113305189 113305247 -46294536 + (A)n Simple_repeat Simple_repeat 1 58 0 2 1449 3080 140 32 21 chr3 113305831 113306364 -46293419 - Lx LINE L1 -1 6653 6115 2 1449 357 214 0 111 chr3 113306505 113306631 -46293152 - PB1D9 SINE Alu -7 113 2 2 1449 246 304 10 115 chr3 113306963 113307067 -46292716 + ORR1B2 LTR MaLR 216 308 -51 2 1449 22 0 0 0 chr3 113308386 113308408 -46291375 + AT_rich Low_complexity Low_complexity 1 22 0 2 1449 941 255 103 78 chr3 113309437 113309807 -46289976 + MTE2a LTR MaLR 1 379 0 2 1449 211 314 0 0 chr3 113310743 113310794 -46288989 + MER5A DNA MER1_type 6 56 -133 2 1449 415 154 12 25 chr3 113310928 113311008 -46288775 + MER5A DNA MER1_type 81 159 -30 2 1449 192 77 0 0 chr3 113312096 113312122 -46287661 + (GAAA)n Simple_repeat Simple_repeat 4 29 0 2 1449 568 154 195 0 chr3 113312334 113312457 -46287326 - B1_Mus1 SINE Alu 0 148 2 2 1449 542 321 26 60 chr3 113312877 113312968 -46286815 + B4 SINE B4 1 87 -205 2 1449 219 36 0 0 chr3 113312968 113312996 -46286787 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 2 1449 542 321 26 60 chr3 113312996 113313136 -46286647 + B4 SINE B4 88 224 -68 2 1449 244 235 133 67 chr3 113313496 113313601 -46286182 + MER5A DNA MER1_type 56 167 -22 2 1449 23 33 0 0 chr3 113314035 113314065 -46285718 + AT_rich Low_complexity Low_complexity 1 30 0 2 1449 4805 162 68 8 chr3 113314468 113315381 -46284402 + Lx4A LINE L1 6084 7051 -7 2 1449 23 33 0 0 chr3 113315638 113315668 -46284115 + AT_rich Low_complexity Low_complexity 1 30 0 2 1449 943 261 129 7 chr3 113315993 113316302 -46283481 + ORR1D1 LTR MaLR 26 372 -2 2 1449 390 252 96 10 chr3 113316989 113317093 -46282690 - MER58B DNA MER1_type -10 331 219 2 1449 309 140 0 0 chr3 113317543 113317600 -46282183 + (TG)n Simple_repeat Simple_repeat 2 58 0 2 1449 484 308 102 5 chr3 113317994 113318180 -46281603 - ID_B1 SINE B4 -18 206 3 2 1449 476 375 0 0 chr3 113318766 113318910 -46280873 - RSINE1 SINE B4 -17 148 5 3 1449 347 333 54 9 chr3 113318911 113319023 -46280760 - ID_B1 SINE B4 -24 200 84 3 1449 22 0 0 0 chr3 113319028 113319050 -46280733 + AT_rich Low_complexity Low_complexity 1 22 0 3 1449 303 268 84 0 chr3 113319116 113319258 -46280525 + MER33 DNA MER1_type 122 275 -49 3 1449 415 325 27 87 chr3 113321350 113321569 -46278214 + MER58A DNA MER1_type 19 224 0 3 1449 387 318 108 10 chr3 113321771 113321965 -46277818 + MER82 DNA MER2_type 1 213 -440 3 1449 373 289 71 55 chr3 113321998 113322181 -46277602 + MER82 DNA MER2_type 280 465 -188 3 1449 297 128 0 0 chr3 113324610 113324657 -46275126 + U2 snRNA snRNA 1 47 -141 3 1449 273 149 0 0 chr3 113325175 113325242 -46274541 + (CAGA)n Simple_repeat Simple_repeat 4 70 0 3 1449 2324 222 75 10 chr3 113325909 113326405 -46273378 - Lx6 LINE L1 -6 7454 6927 3 1449 3588 200 70 29 chr3 113326404 113327227 -46272556 + Lx6 LINE L1 6023 6879 -581 3 1449 249 384 108 24 chr3 113328193 113328527 -46271256 + L2 LINE L2 1322 1683 -1736 3 1449 638 204 117 56 chr3 113328553 113328766 -46271017 - URR1A DNA MER1_type 0 226 1 3 1449 346 227 48 113 chr3 113329151 113329275 -46270508 + B1_Mur1 SINE Alu 1 116 -33 3 1449 2978 73 5 0 chr3 113329276 113329673 -46270110 - MTB LTR MaLR -1 399 1 3 1449 1129 55 0 27 chr3 113329795 113329945 -46269838 + B1_Mus2 SINE Alu 2 147 0 3 1449 259 254 118 15 chr3 113330271 113330339 -46269444 + RSINE1 SINE B4 69 143 -22 3 1449 23 0 0 0 chr3 113331016 113331039 -46268744 + AT_rich Low_complexity Low_complexity 1 23 0 3 1449 217 324 27 54 chr3 113331606 113331717 -46268066 + B3A SINE B2 1 108 -90 3 1449 1021 101 136 0 chr3 113331818 113331987 -46267796 + B2_Mm1t SINE B2 2 193 0 3 1449 297 51 0 0 chr3 113332726 113332765 -46267018 + (CCCCG)n Simple_repeat Simple_repeat 5 43 0 3 1449 567 240 16 31 chr3 113334074 113334203 -46265580 + B1_Mm SINE Alu 1 127 -20 3 1449 393 271 10 10 chr3 113335432 113335529 -46264254 + B4 SINE B4 2 98 -194 3 1449 975 215 200 105 chr3 113335634 113336118 -46263665 - MT2A LTR ERVL -3 530 1 3 1449 290 186 90 34 chr3 113336169 113336258 -46263525 - ORR1A4-int LTR MaLR -1324 639 546 3 1449 3646 171 110 3 chr3 113336273 113337054 -46262729 - MERVL_2A-int LTR ERVL -101 5660 4796 3 1449 968 149 149 21 chr3 113337273 113337491 -46262292 - ORR1A4 LTR MaLR -130 264 1 3 1449 1612 211 18 13 chr3 113337491 113337876 -46261907 - MERVL_2A-int LTR ERVL -5139 622 236 3 1449 996 69 8 0 chr3 113337877 113338008 -46261775 - MERVL_2A-int LTR ERVL -5629 132 1 3 1449 572 258 263 7 chr3 113338010 113338203 -46261580 - MT2A LTR ERVL -2 531 294 3 1449 1105 88 0 26 chr3 113338203 113338355 -46261428 + B1_Mus1 SINE Alu 1 148 0 3 1449 572 258 263 7 chr3 113338355 113338450 -46261333 - MT2A LTR ERVL -240 293 170 3 1449 1351 110 11 0 chr3 113338453 113338644 -46261139 - RMER13B LTR ERVK -453 455 263 3 1449 693 208 32 0 chr3 113338629 113338754 -46261029 - RMER13B LTR ERVK -777 131 3 3 1449 518 200 19 0 chr3 113338756 113338861 -46260922 + MERVL_2A-int LTR ERVL 3757 3863 -1898 3 1449 1096 268 88 17 chr3 113338950 113339246 -46260537 + MTE2b LTR MaLR 1 317 -62 3 1449 521 295 30 55 chr3 113339265 113339466 -46260317 - B3 SINE B2 -1 215 20 3 1449 1046 90 7 0 chr3 113339495 113339640 -46260143 - B1_Mus1 SINE Alu -1 147 2 3 1449 3311 46 2 0 chr3 113339708 113340103 -46259680 - MTA_Mm LTR MaLR 0 396 1 3 1449 212 143 0 0 chr3 113340451 113340486 -46259297 + (TTTC)n Simple_repeat Simple_repeat 4 38 0 3 1449 1294 204 41 0 chr3 113340502 113340771 -46259012 - Lx5 LINE L1 -43 7007 6728 3 1449 1445 108 9 0 chr3 113340771 113340983 -46258800 + ORR1A1 LTR MaLR 114 327 0 3 1449 9299 143 112 9 chr3 113340983 113342764 -46257019 + ORR1A1-int LTR MaLR 1 1963 0 3 1449 2004 158 9 9 chr3 113342764 113343110 -46256673 + ORR1A1 LTR MaLR 1 346 0 3 1449 1112 146 11 0 chr3 113343113 113343298 -46256485 - Lx3B LINE L1 -643 6330 6144 3 1449 2573 132 6 62 chr3 113343290 113343808 -46255975 + L1_Mur1 LINE L1 2105 2593 -3293 3 1449 956 42 0 0 chr3 113343810 113343929 -46255854 + MT2_Mm LTR ERVL 1 119 -374 3 1449 45356 19 1 0 chr3 113343929 113349283 -46250500 + MERVL-int LTR ERVL 10 5371 -114 3 1449 350 125 26 53 chr3 113349283 113349359 -46250424 + ORR1A1-int LTR MaLR 567 640 -1323 3 1449 302 0 0 0 chr3 113349359 113349397 -46250386 + MERVL-int LTR ERVL 5448 5485 0 3 1449 3668 20 121 0 chr3 113349397 113349837 -46249946 + MT2_Mm LTR ERVL 1 493 0 3 1449 8436 128 25 25 chr3 113349837 113350248 -46249535 + L1_Mur1 LINE L1 2591 2998 -2888 3 1449 4184 159 124 72 chr3 113350248 113351219 -46248564 - RLTR13D2 LTR ERVK 0 1023 3 3 1449 8436 128 25 25 chr3 113351219 113351710 -46248073 + L1_Mur1 LINE L1 2999 3483 -2403 3 1449 365 16 65 0 chr3 113351710 113351772 -46248011 + (CAAAA)n Simple_repeat Simple_repeat 1 66 0 3 1449 8436 128 25 25 chr3 113351772 113352451 -46247332 + L1_Mur1 LINE L1 3484 4173 -1713 3 1449 6764 114 9 15 chr3 113353203 113354446 -46245337 - Lx LINE L1 -5 6649 5416 3 1449 23 0 0 0 chr3 113354894 113354917 -46244866 + AT_rich Low_complexity Low_complexity 1 23 0 3 1449 664 309 48 10 chr3 113355182 113355391 -46244392 - MLT1A0 LTR MaLR 0 365 149 3 1449 5535 83 0 16 chr3 113356406 113357174 -46242609 + Lx3_Mus LINE L1 6254 7009 0 3 1449 2139 114 6 63 chr3 113357440 113357787 -46241996 + ORR1A2 LTR MaLR 1 327 0 3 1449 361 128 25 13 chr3 113357810 113357889 -46241894 + CT-rich Low_complexity Low_complexity 2 81 0 3 1449 2623 207 38 33 chr3 113357920 113358378 -46241405 - Lx5 LINE L1 0 7050 6577 3 1449 4010 49 39 2 chr3 113358378 113358885 -46240898 + L1Md_F2 LINE L1 6054 6579 -3 3 1449 2623 207 38 33 chr3 113358885 113359031 -46240752 - Lx5 LINE L1 -474 6576 6443 3 1449 658 170 89 0 chr3 113359070 113359182 -46240601 - B1_Mus2 SINE Alu -9 138 17 3 1449 2536 165 48 11 chr3 113359300 113359778 -46240005 - RLTR28 LTR ERVL -28 496 1 3 1449 27 0 0 0 chr3 113360412 113360439 -46239344 + AT_rich Low_complexity Low_complexity 1 27 0 3 1449 628 273 97 7 chr3 113360748 113361058 -46238725 + L1MA4A LINE L1 5569 5906 -397 3 1449 2764 184 43 2 chr3 113361581 113362088 -46237695 - RMER15 LTR ERVL -45 530 3 3 1449 218 204 50 20 chr3 113362323 113362423 -46237360 + (TA)n Simple_repeat Simple_repeat 1 103 0 3 1449 21 0 0 0 chr3 113362525 113362546 -46237237 + AT_rich Low_complexity Low_complexity 1 21 0 3 1449 1866 76 79 7 chr3 113362546 113362824 -46236959 - L1_Mus3 LINE L1 -7 6631 6334 3 1449 1377 109 97 8 chr3 113362826 113362926 -46236857 - L1_Mur1 LINE L1 -1916 3970 3852 3 1449 639 0 0 0 chr3 113362926 113362997 -46236786 + (TTTC)n Simple_repeat Simple_repeat 2 72 0 3 1449 1377 109 97 8 chr3 113362997 113363155 -46236628 - L1_Mur1 LINE L1 -2035 3851 3690 3 1449 1637 234 38 0 chr3 113363155 113363501 -46236282 - MTC LTR MaLR -62 359 1 3 1449 2871 12 0 0 chr3 113364553 113364879 -46234904 - L1Md_A LINE L1 -2 6580 6255 3 1449 186 43 0 0 chr3 113365423 113365446 -46234337 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 3 1449 2520 79 15 0 chr3 113365451 113365793 -46233990 - L1_Mus1 LINE L1 -6 6561 6215 3 1449 3535 86 6 4 chr3 113365793 113366296 -46233487 + L1Md_F2 LINE L1 5759 6262 -320 3 1449 482 356 71 40 chr3 113366464 113366689 -46233094 + B4A SINE B4 33 264 -28 3 1449 414 256 142 68 chr3 113367279 113367484 -46232299 + RMER2 LTR ERV1 331 550 -17 3 1449 441 110 10 0 chr3 113367669 113367772 -46232011 + (TAGA)n Simple_repeat Simple_repeat 1 104 0 3 1449 231 146 0 0 chr3 113368459 113368500 -46231283 + (TG)n Simple_repeat Simple_repeat 2 42 0 3 1449 468 265 109 48 chr3 113368830 113369060 -46230723 - RLTR16 LTR ERVK -261 244 1 3 1449 448 149 11 11 chr3 113369095 113369190 -46230593 + CT-rich Low_complexity Low_complexity 3 97 0 3 1449 677 225 102 57 chr3 113369192 113369464 -46230319 + MT2A LTR ERVL 322 601 0 3 1449 2691 209 22 68 chr3 113369468 113370178 -46229605 + MTC-int LTR MaLR 5 799 -459 3 1449 333 0 0 0 chr3 113370236 113370273 -46229510 + (CA)n Simple_repeat Simple_repeat 2 38 0 3 1449 356 40 0 20 chr3 113370273 113370323 -46229460 + (TA)n Simple_repeat Simple_repeat 2 51 0 3 1449 1063 194 21 75 chr3 113370333 113370490 -46229293 + Lx7 LINE L1 7410 7556 -140 3 1449 2018 156 3 19 chr3 113370490 113370855 -46228928 + RLTR15 LTR ERVK 1 359 0 3 1449 1063 194 21 75 chr3 113370855 113370976 -46228807 + Lx7 LINE L1 7557 7673 -23 3 181 34359 50 8 4 chr3 113372559 113377839 -46221944 + L1Md_T LINE L1 322 5586 -297 3 1450 8411 34 0 0 chr3 113377839 113378835 -46220948 + L1Md_T LINE L1 5587 6582 0 3 1450 184 330 21 52 chr3 113378962 113379058 -46220725 - MIR SINE MIR -16 246 154 3 1450 495 107 0 0 chr3 113379431 113379506 -46220277 + (TG)n Simple_repeat Simple_repeat 1 75 0 3 1450 1065 43 7 0 chr3 113379925 113380065 -46219718 + L1Md_A LINE L1 6441 6581 -1 3 1450 277 43 0 0 chr3 113380501 113380545 -46219238 + L1_Mus3 LINE L1 5988 6031 -623 3 1450 443 33 33 0 chr3 113380846 113380906 -46218877 + (TTCTC)n Simple_repeat Simple_repeat 4 65 0 3 1450 221 276 0 39 chr3 113380977 113381046 -46218737 - B1F2 SINE Alu -78 69 5 3 1450 243 234 0 15 chr3 113381149 113381214 -46218569 - MLT1F2 LTR MaLR -6 554 491 3 1450 733 352 66 52 chr3 113381320 113381743 -46218040 - MLT1E2 LTR MaLR -6 621 193 3 1450 2894 80 24 22 chr3 113382614 113383023 -46216760 - L1_Mus3 LINE L1 -7 6631 6222 3 1450 269 238 26 71 chr3 113383030 113383143 -46216640 + L1MA9 LINE L1 6133 6240 -72 3 1450 477 0 0 0 chr3 113383181 113383234 -46216549 + (TCTA)n Simple_repeat Simple_repeat 4 56 0 3 1450 572 154 0 14 chr3 113383281 113383419 -46216364 + (TATATG)n Simple_repeat Simple_repeat 3 138 0 3 1450 5381 181 21 27 chr3 113383421 113384961 -46214822 - L1_Mur2 LINE L1 -3428 2449 918 3 1450 222 136 0 0 chr3 113385919 113385963 -46213820 + (TTTA)n Simple_repeat Simple_repeat 1 44 0 3 1450 468 262 79 20 chr3 113385963 113386115 -46213668 - B3A SINE B2 0 198 38 3 1450 1998 168 64 41 chr3 113386116 113386506 -46213277 - MTB_Mm LTR MaLR -1 406 8 3 1450 231 337 89 0 chr3 113386600 113386701 -46213082 - MIR SINE MIR -133 129 20 3 1450 191 297 97 26 chr3 113386903 113387017 -46212766 + MIR SINE MIR 138 259 -3 3 1450 670 329 70 40 chr3 113387344 113388160 -46211623 + L1_Mur3 LINE L1 1964 2790 -3090 3 1450 312 211 266 0 chr3 113388163 113388272 -46211511 + Lx9 LINE L1 7055 7192 -452 3 1450 413 322 98 16 chr3 113388273 113388519 -46211264 + L1_Mur3 LINE L1 4310 4575 -1305 3 1450 863 336 98 21 chr3 113388534 113388571 -46211212 + L1_Mur3 LINE L1 4711 4747 -1133 3 1450 180 0 0 0 chr3 113388571 113388591 -46211192 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 3 1450 863 325 78 18 chr3 113388591 113389441 -46210342 + L1_Mur3 LINE L1 4748 5699 -472 3 1450 4827 64 12 17 chr3 113389450 113390105 -46209678 - L1Md_F2 LINE L1 -14 6568 5917 4 1450 10204 64 1 1 chr3 113390105 113391444 -46208339 + L1_Mm LINE L1 3293 4630 -1253 4 1450 256 300 0 0 chr3 113391450 113391530 -46208253 + L1_Mur3 LINE L1 5695 5774 -523 3 1450 321 26 0 0 chr3 113391535 113391573 -46208210 + (CA)n Simple_repeat Simple_repeat 1 38 0 4 1450 470 210 40 86 chr3 113391661 113391812 -46207971 + B1F2 SINE Alu 1 144 -5 4 1450 33444 81 8 10 chr3 113392293 113398520 -46201263 - L1Md_F2 LINE L1 -2 6580 366 4 1450 44 20 0 0 chr3 113398787 113398838 -46200945 + AT_rich Low_complexity Low_complexity 1 51 0 4 1450 351 0 0 0 chr3 113399204 113399243 -46200540 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 4 1450 251 289 175 33 chr3 113400652 113400863 -46198920 - LFSINE_Vert SINE SINE -196 263 23 4 1450 191 36 0 35 chr3 113401170 113401199 -46198584 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 4 1450 1110 56 0 0 chr3 113403433 113403575 -46196208 + (TTCC)n Simple_repeat Simple_repeat 2 143 0 4 1450 7196 246 72 20 chr3 113403681 113403825 -46195958 - Lx7 LINE L1 0 7696 7549 4 1450 239 54 0 26 chr3 113403825 113403863 -46195920 + (TATAA)n Simple_repeat Simple_repeat 1 37 0 4 1450 7196 239 67 16 chr3 113403863 113405793 -46193990 - Lx7 LINE L1 -148 7548 5511 4 1450 23 0 0 0 chr3 113405961 113405984 -46193799 + AT_rich Low_complexity Low_complexity 1 23 0 4 1450 2990 57 20 23 chr3 113406067 113406464 -46193319 + MTA_Mm LTR MaLR 1 396 0 4 1450 1181 114 0 6 chr3 113406475 113406652 -46193131 - B2_Mm2 SINE B2 -17 178 3 4 1450 27 0 0 0 chr3 113406876 113406903 -46192880 + AT_rich Low_complexity Low_complexity 1 27 0 4 1450 219 263 50 28 chr3 113406915 113407056 -46192727 + (TATATG)n Simple_repeat Simple_repeat 6 149 0 4 1450 255 349 92 26 chr3 113407074 113407227 -46192556 - MIR SINE MIR -82 180 18 4 1450 2579 178 92 85 chr3 113407350 113408033 -46191750 - RMER6C LTR ERVK -2 688 1 4 1450 466 185 15 0 chr3 113408253 113408383 -46191400 + (CA)n Simple_repeat Simple_repeat 2 133 0 4 1450 195 100 0 0 chr3 113408423 113408453 -46191330 + (CAGA)n Simple_repeat Simple_repeat 1 30 0 4 1450 249 33 0 0 chr3 113408796 113408826 -46190957 + (T)n Simple_repeat Simple_repeat 1 30 0 4 1450 35897 70 4 2 chr3 113409441 113415599 -46184184 - L1Md_F3 LINE L1 -14 6570 446 4 1450 31343 46 1 115 chr3 113415770 113419939 -46179844 + L1Md_F2 LINE L1 1110 4943 -940 4 1450 1600 21 0 0 chr3 113419939 113420129 -46179654 + MT2_Mm LTR ERVL 304 493 0 4 1450 31343 46 1 115 chr3 113420129 113420826 -46178957 + L1Md_F2 LINE L1 4944 5585 -298 4 1450 7817 54 2 6 chr3 113420827 113421826 -46177957 + L1Md_F2 LINE L1 5587 6581 -1 4 1450 3418 71 0 0 chr3 113421826 113422263 -46177520 + L1Md_F2 LINE L1 5150 5586 -297 4 1450 7927 55 3 2 chr3 113422263 113423252 -46176531 + L1Md_F2 LINE L1 5587 6576 -6 4 1450 1302 296 57 76 chr3 113423349 113424391 -46175392 - L1MC3 LINE L1 -142 7643 6622 4 1450 1031 311 116 32 chr3 113424407 113424881 -46174902 + MER44B DNA MER2_type 10 523 -27 4 1450 470 167 8 42 chr3 113425078 113425197 -46174586 - Lx2 LINE L1 -41 6956 6842 4 1450 12439 93 38 5 chr3 113425193 113427786 -46171997 - L1VL2 LINE L1 -819 2796 108 4 1450 238 303 0 0 chr3 113428064 113428140 -46171643 - L1MB8 LINE L1 -35 6143 6068 4 1450 471 313 10 2 chr3 113428223 113428419 -46171364 + L1MA4A LINE L1 5673 5936 -367 4 1450 21 36 0 0 chr3 113428576 113428604 -46171179 + AT_rich Low_complexity Low_complexity 1 28 0 4 1450 676 279 56 0 chr3 113428784 113428981 -46170802 - B3 SINE B2 -8 208 1 4 1450 1753 23 4 27 chr3 113429449 113429674 -46170109 - L1Md_F3 LINE L1 -2 6582 6363 4 1450 266 0 29 0 chr3 113430006 113430040 -46169743 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 4 1450 3940 62 0 0 chr3 113430832 113431331 -46168452 - L1Md_F2 LINE L1 0 6582 6084 4 1450 303 78 19 0 chr3 113431477 113431529 -46168254 - B2_Mm1t SINE B2 -163 53 2 4 1450 30 27 0 0 chr3 113431534 113431571 -46168212 + AT_rich Low_complexity Low_complexity 1 37 0 4 1450 795 235 23 97 chr3 113432401 113432750 -46167033 - Lx9 LINE L1 -1 7643 7321 4 1450 907 189 21 11 chr3 113432753 113432940 -46166843 - B2_Mm2 SINE B2 -5 190 2 4 1450 249 335 121 30 chr3 113434338 113434504 -46165279 + MIRc SINE MIR 27 207 -61 4 1450 2886 243 66 3 chr3 113434759 113435399 -46164384 - Lx6 LINE L1 -21 7439 6760 4 1450 317 250 50 0 chr3 113435401 113435481 -46164302 - ID SINE ID -138 86 3 4 1450 13129 148 18 10 chr3 113435530 113438699 -46161084 - Lx LINE L1 -1 6653 3478 4 1450 263 279 0 14 chr3 113439447 113439516 -46160267 + CT-rich Low_complexity Low_complexity 3 70 0 4 1450 342 381 85 41 chr3 113439768 113440039 -46159744 + MLT1I LTR MaLR 112 394 -17 4 1450 396 0 0 0 chr3 113440235 113440279 -46159504 + (TTTA)n Simple_repeat Simple_repeat 1 44 0 4 1450 964 144 20 0 chr3 113440280 113440433 -46159350 - B2_Mm2 SINE B2 -39 156 1 4 1450 657 221 43 7 chr3 113440981 113441122 -46158661 + MT2A LTR ERVL 1 146 -387 4 1450 616 301 44 55 chr3 113441130 113441401 -46158382 + MT2A LTR ERVL 279 546 -55 4 1450 7548 100 12 15 chr3 113441402 113442768 -46157015 - L1_Mus4 LINE L1 -3 6633 5256 4 1450 1035 132 6 6 chr3 113442768 113442928 -46156855 + L1_Mur2 LINE L1 5066 5225 -652 4 1450 469 275 35 7 chr3 113443063 113443206 -46156577 - B1_Mur1 SINE Alu 0 149 3 4 1450 54 87 0 0 chr3 113443321 113443459 -46156324 + AT_rich Low_complexity Low_complexity 1 138 0 4 1450 387 0 0 0 chr3 113443553 113443596 -46156187 + (TTTA)n Simple_repeat Simple_repeat 4 46 0 4 1450 258 32 0 0 chr3 113443597 113443628 -46156155 + (TTAA)n Simple_repeat Simple_repeat 3 33 0 4 1450 1787 120 10 29 chr3 113444543 113444851 -46154932 - L1_Mus3 LINE L1 -6 6632 6331 4 1450 37767 45 1 3 chr3 113445171 113451630 -46148153 - L1Md_T LINE L1 0 6585 41 4 1450 871 246 11 21 chr3 113452176 113452367 -46147416 - B3 SINE B2 -27 189 1 4 1450 314 292 18 9 chr3 113453385 113453499 -46146284 - Lx3C LINE L1 -3 6997 6883 4 1450 560 158 11 7 chr3 113453468 113453580 -46146203 - Lx3C LINE L1 -378 6622 6509 4 1450 2930 121 12 6 chr3 113453576 113454068 -46145715 + L1_Mur1 LINE L1 3382 3876 -2010 4 1450 24 0 0 0 chr3 113454837 113454861 -46144922 + AT_rich Low_complexity Low_complexity 1 24 0 4 1450 3423 169 68 61 chr3 113455080 113455800 -46143983 + RLTR21 LTR ERVK 7 731 -841 4 1450 1955 214 2 57 chr3 113455800 113456255 -46143528 - Lx2B LINE L1 -23 6977 6548 4 1450 2186 189 153 43 chr3 113456265 113456965 -46142818 + RLTR21 LTR ERVK 730 1449 -123 4 1450 29 28 0 0 chr3 113457217 113457253 -46142530 + AT_rich Low_complexity Low_complexity 1 36 0 4 1450 198 0 0 0 chr3 113457535 113457557 -46142226 + (TTTG)n Simple_repeat Simple_repeat 3 24 0 4 1450 495 0 0 0 chr3 113457587 113457642 -46142141 + (TTTA)n Simple_repeat Simple_repeat 2 56 0 4 1450 1978 125 0 20 chr3 113457643 113457946 -46141837 - Lx3A LINE L1 -15 6966 6670 4 1450 827 161 20 13 chr3 113458010 113458161 -46141622 + MTB_Mm LTR MaLR 244 395 -12 4 1450 28 71 0 0 chr3 113458197 113458253 -46141530 + AT_rich Low_complexity Low_complexity 1 56 0 4 1450 468 229 72 96 chr3 113461243 113461490 -46138293 - RLTR25B LTR ERVK 0 1028 658 4 1450 529 291 76 19 chr3 113461957 113462167 -46137616 - ID_B1 SINE B4 -1 223 2 4 1450 246 32 0 0 chr3 113462365 113462396 -46137387 + (CAA)n Simple_repeat Simple_repeat 2 32 0 4 1450 5963 48 3 0 chr3 113463399 113464134 -46135649 - L1Md_F2 LINE L1 -12 6570 5834 4 1450 272 342 8 67 chr3 113465091 113465210 -46134573 + PB1D9 SINE Alu 1 112 -8 4 1450 186 43 0 0 chr3 113465437 113465460 -46134323 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 4 1450 417 20 0 0 chr3 113465698 113465748 -46134035 + (TTTC)n Simple_repeat Simple_repeat 2 51 0 4 1450 1409 232 76 119 chr3 113466269 113466767 -46133016 - RMER17D2 LTR ERVK -12 894 379 4 1450 1121 118 6 0 chr3 113466767 113466945 -46132838 + (GGAGA)n Simple_repeat Simple_repeat 2 180 0 4 1450 1380 13 25 12 chr3 113466946 113467273 -46132510 + (GAGAA)n Simple_repeat Simple_repeat 1 331 0 4 1450 1409 198 64 112 chr3 113467273 113467693 -46132090 - RMER17D2 LTR ERVK -419 390 5 4 1450 987 152 0 0 chr3 113468050 113468228 -46131555 + GA-rich Low_complexity Low_complexity 3 180 0 4 1450 2551 128 77 18 chr3 113468389 113468735 -46131048 - Lx4B LINE L1 -1002 6056 5680 4 1450 2072 141 3 47 chr3 113468735 113469077 -46130706 - ORR1A4 LTR MaLR -2 327 1 4 1450 2551 128 81 20 chr3 113469077 113469219 -46130564 - Lx4B LINE L1 -1379 5679 5536 4 1450 4712 176 42 9 chr3 113469277 113470137 -46129646 + Lx4B LINE L1 6165 7052 -6 4 1450 255 130 0 0 chr3 113470145 113470199 -46129584 + (CCAA)n Simple_repeat Simple_repeat 2 55 0 4 1450 473 50 0 0 chr3 113470479 113470539 -46129244 - B1_Mus2 SINE Alu -13 134 75 4 1450 216 0 0 0 chr3 113470941 113470965 -46128818 + (TAAAA)n Simple_repeat Simple_repeat 5 28 0 4 1450 1549 42 16 5 chr3 113471070 113471263 -46128520 - B2_Mm2 SINE B2 0 195 1 4 1450 226 0 100 20 chr3 113471983 113472033 -46127750 + (TTTTTG)n Simple_repeat Simple_repeat 2 55 0 4 1450 593 131 0 9 chr3 113472309 113472417 -46127366 + (GAAA)n Simple_repeat Simple_repeat 3 109 0 4 1450 180 77 0 0 chr3 113472466 113472492 -46127291 + (T)n Simple_repeat Simple_repeat 1 26 0 4 1450 223 327 200 8 chr3 113472814 113473064 -46126719 + L2 LINE L2 2696 2993 -426 4 1450 22 80 0 0 chr3 113474075 113474125 -46125658 + AT_rich Low_complexity Low_complexity 1 50 0 4 1450 4514 80 7 10 chr3 113474643 113475262 -46124521 - L1Md_F2 LINE L1 -3 6579 5963 4 1450 7568 4 0 1 chr3 113475264 113476109 -46123674 - L1Md_A LINE L1 0 6582 5739 4 1450 20016 68 6 9 chr3 113476109 113478909 -46120874 - L1Md_F2 LINE L1 -619 5963 3175 4 1450 705 243 199 106 chr3 113478909 113479042 -46120741 - ORR1D1 LTR MaLR -8 366 177 4 1450 612 81 0 0 chr3 113479042 113479129 -46120654 + (GA)n Simple_repeat Simple_repeat 2 88 0 4 1450 705 243 199 106 chr3 113479129 113479206 -46120577 - ORR1D1 LTR MaLR -198 176 111 4 1450 482 78 0 66 chr3 113479206 113479314 -46120469 + L1Md_F2 LINE L1 6484 6582 0 4 1450 705 243 199 106 chr3 113479314 113479432 -46120351 - ORR1D1 LTR MaLR -264 110 7 4 1450 23 0 0 0 chr3 113479571 113479594 -46120189 + AT_rich Low_complexity Low_complexity 1 23 0 4 1450 228 346 96 37 chr3 113480152 113480287 -46119496 - B1_Mur1 SINE Alu -2 147 5 4 1450 326 216 56 11 chr3 113480320 113480409 -46119374 - MTEa LTR MaLR -4 375 283 5 1450 321 400 27 23 chr3 113480554 113480774 -46119009 + RMER15-int LTR ERVL 144 364 -4635 5 1450 668 217 65 7 chr3 113480782 113480859 -46118924 - RLTR20A2 LTR ERVK -10 568 492 5 1450 396 0 0 0 chr3 113480859 113480903 -46118880 + (CA)n Simple_repeat Simple_repeat 2 45 0 5 1450 668 217 65 7 chr3 113480903 113480964 -46118819 - RLTR20A2 LTR ERVK -87 491 423 5 1450 1409 187 17 15 chr3 113480955 113481280 -46118503 - RLTR20A2 LTR ERVK -218 316 1 5 1450 1415 318 57 34 chr3 113481290 113481938 -46117845 + RMER15-int LTR ERVL 383 1045 -3954 5 1450 921 67 2 2 chr3 113482148 113482287 -46117496 - B1_Mm SINE Alu -10 139 1 5 1450 356 241 38 0 chr3 113482301 113482380 -46117403 + RMER15-int LTR ERVL 1285 1366 -3633 5 1450 579 132 0 0 chr3 113482396 113482510 -46117273 + (TC)n Simple_repeat Simple_repeat 2 115 0 5 1450 306 0 0 0 chr3 113482510 113482544 -46117239 + (CA)n Simple_repeat Simple_repeat 1 34 0 5 1450 4761 175 42 10 chr3 113482549 113483534 -46116249 + L1_Mur3 LINE L1 3392 4407 -1473 5 1450 2180 244 121 15 chr3 113483550 113483789 -46115994 + Lx7 LINE L1 5899 6197 -1499 5 1450 495 0 0 0 chr3 113483789 113483844 -46115939 + (TCTA)n Simple_repeat Simple_repeat 4 58 0 5 1450 2180 244 121 15 chr3 113483844 113484258 -46115525 + Lx7 LINE L1 6198 6620 -1076 5 1450 1038 222 59 17 chr3 113484258 113484496 -46115287 - ORR1C2 LTR MaLR 0 384 137 5 1450 1110 58 0 0 chr3 113484711 113484866 -46114917 + L1Md_F2 LINE L1 6428 6582 0 5 1450 2130 116 19 3 chr3 113484908 113485228 -46114555 + ORR1A2 LTR MaLR 3 327 0 5 1450 1174 176 20 27 chr3 113485296 113485633 -46114150 + RMER10A LTR ERVL 55 429 -13 5 1450 329 91 0 0 chr3 113485634 113485678 -46114105 + (TCCCC)n Simple_repeat Simple_repeat 4 47 0 5 1450 503 270 0 6 chr3 113485679 113485843 -46113940 + CT-rich Low_complexity Low_complexity 1 163 0 5 1450 462 36 0 0 chr3 113485895 113485951 -46113832 + (TCCCC)n Simple_repeat Simple_repeat 5 60 0 5 1450 658 242 216 5 chr3 113485968 113486176 -46113607 + MTD LTR MaLR 166 417 -2 5 1450 181 129 65 0 chr3 113486205 113486236 -46113547 + L2b LINE L2 3334 3366 -9 5 1450 449 311 52 28 chr3 113486236 113486519 -46113264 - L1M6 LINE L1 -4680 1816 1351 5 1450 243 260 0 0 chr3 113486941 113486991 -46112792 - PB1 SINE Alu -3 124 75 5 1450 294 173 0 0 chr3 113486991 113487066 -46112717 + (CAGT)n Simple_repeat Simple_repeat 2 76 0 5 1450 597 277 137 77 chr3 113487073 113487386 -46112397 + RLTR28B LTR ERVL 139 470 -11 5 1450 1193 155 5 0 chr3 113487423 113487617 -46112166 + ORR1A4 LTR MaLR 1 195 -134 5 1450 3821 126 49 189 chr3 113487614 113488581 -46111202 + ORR1A4-int LTR MaLR 1133 1963 0 5 1450 1766 155 36 59 chr3 113488581 113488918 -46110865 + ORR1A4 LTR MaLR 1 329 0 5 1450 2556 47 0 0 chr3 113489105 113489422 -46110361 - L1Md_F2 LINE L1 0 6582 6266 5 1450 186 43 0 0 chr3 113489507 113489530 -46110253 + (TC)n Simple_repeat Simple_repeat 2 24 0 5 1450 681 36 0 0 chr3 113489558 113489642 -46110141 + (TG)n Simple_repeat Simple_repeat 1 84 0 5 1450 445 336 0 24 chr3 113489644 113489769 -46110014 - RSINE1 SINE B4 -10 155 34 5 1450 329 250 132 36 chr3 113489778 113489944 -46109839 + Lx7 LINE L1 7515 7696 0 5 1450 29 0 0 0 chr3 113490560 113490589 -46109194 + AT_rich Low_complexity Low_complexity 1 29 0 5 1450 325 321 91 45 chr3 113491744 113491920 -46107863 + MER21B LTR ERV1 425 608 -255 5 1450 4146 121 5 11 chr3 113491941 113492560 -46107223 + Lx LINE L1 5781 6395 -259 5 1450 4781 58 8 7 chr3 113492574 113493183 -46106600 - L1_Mus1 LINE L1 0 6567 5958 5 1450 393 315 62 0 chr3 113493188 113493318 -46106465 - B1_Mur2 SINE Alu -11 138 1 5 1450 1277 58 0 6 chr3 113493831 113494003 -46105780 + (TTTC)n Simple_repeat Simple_repeat 2 172 0 5 1450 401 331 46 0 chr3 113494003 113494133 -46105650 - B1F2 SINE Alu -12 137 2 5 1450 321 308 85 19 chr3 113495047 113495164 -46104619 - MLT1G3 LTR MaLR -59 536 406 5 1450 6248 60 2 4 chr3 113495745 113496554 -46103229 + L1Md_F2 LINE L1 5776 6582 0 5 1450 3170 161 21 30 chr3 113497323 113497885 -46101898 - RLTR31B_Mm LTR ERVK 0 557 1 5 1450 189 0 0 0 chr3 113498189 113498210 -46101573 + (TTTAA)n Simple_repeat Simple_repeat 3 23 0 5 1450 276 170 19 0 chr3 113498418 113498471 -46101312 + Lx7 LINE L1 7206 7259 -437 5 1450 798 124 8 0 chr3 113498483 113498612 -46101171 - L1_Mus1 LINE L1 -1 6566 6437 5 1450 714 55 0 0 chr3 113498677 113498768 -46101015 + (TC)n Simple_repeat Simple_repeat 2 92 0 5 1450 25 75 0 0 chr3 113498910 113498963 -46100820 + AT_rich Low_complexity Low_complexity 1 53 0 5 1450 183 80 0 0 chr3 113499855 113499880 -46099903 + (A)n Simple_repeat Simple_repeat 1 25 0 5 1450 1014 318 43 32 chr3 113500066 113500438 -46099345 - MTE2b LTR MaLR -23 356 1 1 1450 375 189 0 51 chr3 113500653 113500731 -46099052 + HAL1-3A_ME LINE L1 1976 2049 -809 2 1450 249 190 0 49 chr3 113500745 113500867 -46098916 + (CAGAGA)n Simple_repeat Simple_repeat 3 118 0 3 1450 252 59 0 0 chr3 113500958 113500992 -46098791 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 4 1450 392 326 53 0 chr3 113501116 113501248 -46098535 - B1_Mur1 SINE Alu 0 149 11 5 1450 264 295 98 77 chr3 113501437 113501672 -46098111 + MER33 DNA MER1_type 14 253 -71 6 1450 367 271 34 27 chr3 113501686 113501834 -46097949 - L1MA7 LINE L1 -6 6285 6137 7 1450 402 21 0 0 chr3 113501835 113501882 -46097901 + (TA)n Simple_repeat Simple_repeat 2 48 0 8 1450 3738 73 0 4 chr3 113502077 113502558 -46097225 - L1_Mus1 LINE L1 -1 6566 6088 9 1450 414 0 0 0 chr3 113503181 113503227 -46096556 + (TC)n Simple_repeat Simple_repeat 2 47 0 1 1450 183 156 0 0 chr3 113503228 113503260 -46096523 + (TG)n Simple_repeat Simple_repeat 1 32 0 1 1450 2245 265 98 77 chr3 113503533 113504416 -46095367 + RMER19B LTR ERVK 1 902 0 1 1450 1695 194 35 77 chr3 113504527 113504912 -46094871 - ORR1B1 LTR MaLR 0 394 1 1 1450 26 0 0 0 chr3 113505008 113505034 -46094749 + AT_rich Low_complexity Low_complexity 1 26 0 1 1450 2449 110 36 0 chr3 113505301 113505657 -46094126 - Lx3_Mus LINE L1 -257 6752 6384 1 1450 5673 45 0 12 chr3 113505657 113506375 -46093408 + L1Md_F2 LINE L1 5874 6582 0 1 1450 2097 74 0 0 chr3 113506383 113506653 -46093130 + L1_Mur1 LINE L1 5567 5836 -50 1 1450 1027 228 98 77 chr3 113506784 113507019 -46092764 + ORR1D1 LTR MaLR 1 228 -146 1 1450 375 60 0 0 chr3 113507019 113507069 -46092714 + (CCTG)n Simple_repeat Simple_repeat 1 50 0 1 1450 1027 228 98 77 chr3 113507069 113507199 -46092584 + ORR1D1 LTR MaLR 229 374 0 1 1450 228 300 0 0 chr3 113507541 113507591 -46092192 - ID4 SINE ID -15 68 19 2 1450 225 331 89 9 chr3 113507611 113507741 -46092042 - B1F SINE Alu -9 140 1 2 1451 2096 95 49 3 chr3 113508653 113508958 -46090825 - ORR1A2 LTR MaLR -8 319 1 2 1451 313 170 77 14 chr3 113509157 113509300 -46090483 + (TA)n Simple_repeat Simple_repeat 1 152 0 2 1451 1968 138 8 47 chr3 113509423 113509787 -46089996 - Lx2 LINE L1 -710 6287 5938 2 1451 4163 155 36 12 chr3 113509787 113510507 -46089276 + Lx2 LINE L1 6260 6996 -1 2 1451 26 0 0 0 chr3 113510577 113510603 -46089180 + AT_rich Low_complexity Low_complexity 1 26 0 2 1451 2308 74 114 6 chr3 113510740 113511092 -46088691 + RLTR10 LTR ERVK 1 390 0 2 1451 1809 165 79 0 chr3 113511649 113511989 -46087794 - ORR1B2 LTR MaLR 0 367 1 2 1451 1975 215 91 11 chr3 113512138 113512612 -46087171 - Lx3C LINE L1 -4 6972 6461 2 1451 180 85 0 78 chr3 113512664 113512715 -46087068 + T-rich Low_complexity Low_complexity 3 49 0 2 1451 315 270 68 0 chr3 113512779 113512853 -46086930 - B3 SINE B2 -129 87 9 3 1451 29 0 0 0 chr3 113513406 113513435 -46086348 + AT_rich Low_complexity Low_complexity 1 29 0 3 1451 755 257 22 65 chr3 113513869 113514098 -46085685 - ID_B1 SINE B4 -3 221 3 3 1451 583 241 259 0 chr3 113514132 113514302 -46085481 - B3 SINE B2 -1 215 2 3 1451 284 258 74 33 chr3 113514479 113514786 -46084997 - Lx7 LINE L1 -2 7694 7328 3 1451 204 393 32 45 chr3 113514954 113515111 -46084672 + MIR SINE MIR 102 256 -6 3 1451 24 53 0 0 chr3 113515189 113515227 -46084556 + AT_rich Low_complexity Low_complexity 1 38 0 3 1451 21 0 0 0 chr3 113515761 113515782 -46084001 + AT_rich Low_complexity Low_complexity 1 21 0 3 1451 1491 251 134 0 chr3 113516237 113516624 -46083159 - Lx9 LINE L1 -747 6897 6459 3 1451 2305 214 48 6 chr3 113516634 113517155 -46082628 + Lx9 LINE L1 6923 7465 -179 3 1451 4149 236 66 12 chr3 113517155 113518217 -46081566 + Lx7 LINE L1 5919 7037 -659 3 1451 461 223 146 16 chr3 113518216 113518339 -46081444 + Lx7 LINE L1 7155 7293 -403 3 1451 1953 58 0 0 chr3 113518349 113518590 -46081193 - L1Md_F2 LINE L1 -391 6191 5951 4 1451 1133 66 0 0 chr3 113518590 113518742 -46081041 + L1Md_F2 LINE L1 6412 6563 -19 4 1451 245 29 29 0 chr3 113518745 113518779 -46081004 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 4 1451 607 246 117 112 chr3 113518781 113519175 -46080608 + Lx7 LINE L1 7282 7677 -19 3 1451 267 103 0 0 chr3 113519184 113519223 -46080560 + (CATA)n Simple_repeat Simple_repeat 2 40 0 4 1451 437 196 38 0 chr3 113519223 113519356 -46080427 + Lx9 LINE L1 7506 7643 -1 3 1451 575 314 61 9 chr3 113519376 113519607 -46080176 + Lx8 LINE L1 6253 6495 -978 4 1451 227 289 83 12 chr3 113519636 113519720 -46080063 - HAL1 LINE L1 -664 1843 1754 4 1451 656 161 388 6 chr3 113519869 113520082 -46079701 + RMER19C LTR ERVK 1 289 -448 4 1451 334 328 51 62 chr3 113520160 113520452 -46079331 + Lx9 LINE L1 7169 7457 -187 4 1451 387 41 0 0 chr3 113520452 113520501 -46079282 + (TG)n Simple_repeat Simple_repeat 2 50 0 4 1451 290 257 115 35 chr3 113521328 113521441 -46078342 + MLT1A1 LTR MaLR 269 390 -18 4 1451 21 36 0 0 chr3 113522519 113522547 -46077236 + AT_rich Low_complexity Low_complexity 1 28 0 5 1451 324 0 0 0 chr3 113523409 113523445 -46076338 + (TG)n Simple_repeat Simple_repeat 1 36 0 5 1451 426 297 105 86 chr3 113523861 113524185 -46075598 - MTEb LTR MaLR -43 336 7 5 1451 1421 368 77 32 chr3 113524194 113524939 -46074844 - MTEb-int LTR MaLR -2 1578 801 5 1451 265 334 122 27 chr3 113525199 113525459 -46074324 - MTEb-int LTR MaLR -1044 465 216 5 1451 284 348 68 75 chr3 113525898 113526311 -46073472 - L2 LINE L2 -575 2844 2435 5 1451 285 29 0 0 chr3 113526689 113526723 -46073060 + (CA)n Simple_repeat Simple_repeat 1 34 0 5 1451 227 319 21 7 chr3 113526723 113526868 -46072915 + (TATATG)n Simple_repeat Simple_repeat 4 150 0 5 1451 268 346 84 0 chr3 113527631 113527738 -46072045 + Tigger7 DNA MER2_type 2373 2488 -3 5 1451 456 19 0 0 chr3 113527955 113528008 -46071775 + (TCTA)n Simple_repeat Simple_repeat 1 53 0 5 1451 627 301 0 0 chr3 113528008 113528141 -46071642 - B1_Mur3 SINE Alu -16 133 1 5 1451 339 25 0 0 chr3 113528867 113528907 -46070876 + (TG)n Simple_repeat Simple_repeat 2 41 0 5 1451 769 276 117 40 chr3 113528909 113529158 -46070625 - B4A SINE B4 -23 269 2 6 1451 3802 79 6 10 chr3 113529235 113529746 -46070037 - L1Md_F2 LINE L1 0 6582 6074 6 1451 509 223 58 0 chr3 113530235 113530338 -46069445 + B1_Mur4 SINE Alu 42 150 0 6 1451 4924 126 39 1 chr3 113530985 113531750 -46068033 - Lx3A LINE L1 -7 6974 6181 6 1451 2401 167 10 0 chr3 113531876 113532283 -46067500 - MTC LTR MaLR -8 413 3 6 1451 359 194 0 11 chr3 113532889 113532983 -46066800 + (TA)n Simple_repeat Simple_repeat 1 93 0 6 1451 24 32 0 0 chr3 113533745 113533776 -46066007 + AT_rich Low_complexity Low_complexity 1 31 0 6 1451 634 82 20 0 chr3 113534008 113534106 -46065677 + (TC)n Simple_repeat Simple_repeat 1 100 0 6 1451 183 114 0 0 chr3 113534118 113534153 -46065630 + (CTTG)n Simple_repeat Simple_repeat 2 36 0 6 1451 8176 48 1 6 chr3 113535323 113537013 -46062770 - L1Md_F2 LINE L1 -2 6580 4894 6 1451 35350 36 0 0 chr3 113537098 113542308 -46057475 + L1Md_T LINE L1 283 5589 -297 7 1451 8981 6 0 0 chr3 113542308 113543304 -46056479 + L1Md_T LINE L1 5590 6585 0 7 1451 1417 56 39 0 chr3 113543373 113543553 -46056230 + B2_Mm2 SINE B2 1 187 -8 7 1451 468 172 0 0 chr3 113544550 113544637 -46055146 + T-rich Low_complexity Low_complexity 1 87 0 7 1451 1117 97 0 0 chr3 113544638 113544783 -46055000 - B1_Mm SINE Alu -2 145 1 7 1451 276 20 0 89 chr3 113544894 113544950 -46054833 + (TTTTTG)n Simple_repeat Simple_repeat 2 52 0 7 1451 374 314 33 0 chr3 113545609 113545730 -46054053 + MLT1A0 LTR MaLR 6 130 -235 7 1451 349 357 8 0 chr3 113546680 113546806 -46052977 + ID_B1 SINE B4 90 216 -8 7 1451 399 265 58 44 chr3 113546981 113547126 -46052657 - Lx7 LINE L1 -25 7671 7559 7 1451 23 0 0 0 chr3 113547127 113547150 -46052633 + AT_rich Low_complexity Low_complexity 1 23 0 7 1451 621 27 0 0 chr3 113547715 113547790 -46051993 + (CA)n Simple_repeat Simple_repeat 2 76 0 7 1451 315 0 0 0 chr3 113547790 113547824 -46051959 + (GA)n Simple_repeat Simple_repeat 2 36 0 8 1451 22 0 0 0 chr3 113547933 113547955 -46051828 + AT_rich Low_complexity Low_complexity 1 22 0 8 1451 1635 141 8 104 chr3 113548155 113548511 -46051272 + RLTRETN_Mm LTR ERVK 1 322 0 8 1451 693 249 99 6 chr3 113548710 113548892 -46050891 - B3 SINE B2 -17 199 1 8 1451 1732 193 75 3 chr3 113548993 113549351 -46050432 - ORR1B1 LTR MaLR -10 384 1 8 1451 21 89 0 0 chr3 113549564 113549620 -46050163 + AT_rich Low_complexity Low_complexity 1 56 0 8 1451 35583 51 12 0 chr3 113549632 113555000 -46044783 + L1Md_F LINE L1 153 5586 -297 8 1451 8301 32 8 0 chr3 113555000 113555988 -46043795 + L1Md_T LINE L1 5587 6582 0 8 1451 3159 125 65 26 chr3 113556839 113557404 -46042379 + Lx3A LINE L1 6387 6973 -8 8 1451 35 0 0 0 chr3 113557407 113557442 -46042341 + AT_rich Low_complexity Low_complexity 1 35 0 8 1451 579 215 8 8 chr3 113557632 113557763 -46042020 + MurSatRep1 Unknown Unknown 612 742 -1395 9 1451 395 377 18 18 chr3 113558038 113558547 -46041236 + MurSatRep1 Unknown Unknown 1744 2049 -88 9 1451 1950 109 3 26 chr3 113558568 113558878 -46040905 - L1_Mus2 LINE L1 -1 6565 6263 9 1451 268 304 48 77 chr3 113558883 113559090 -46040693 + MurSatRep1 Unknown Unknown 1747 1947 -190 9 1451 223 341 11 66 chr3 113559550 113559641 -46040142 + B1_Mus2 SINE Alu 3 88 -59 9 1451 835 270 81 0 chr3 113559788 113559999 -46039784 - Lx8 LINE L1 -253 7220 6993 9 1451 2511 260 75 21 chr3 113560863 113561578 -46038205 + Lx6 LINE L1 6702 7455 -5 9 1451 573 349 41 20 chr3 113563875 113564121 -46035662 + B4A SINE B4 3 253 -39 9 1451 372 22 0 0 chr3 113564158 113564203 -46035580 + (CA)n Simple_repeat Simple_repeat 2 46 0 9 1451 1029 101 0 0 chr3 113564585 113564723 -46035060 + B1_Mus2 SINE Alu 1 138 -9 9 1451 746 138 8 8 chr3 113566139 113566263 -46033520 - Lx5 LINE L1 -1340 5710 5587 1 1451 4572 51 3 0 chr3 113566263 113566832 -46032951 + L1Md_F2 LINE L1 6012 6582 0 1 1451 917 147 7 7 chr3 113566832 113566983 -46032800 - L1_Mur2 LINE L1 -207 5670 5520 1 1451 5832 84 0 0 chr3 113566975 113567781 -46032002 + L1Md_F2 LINE L1 3554 4359 -1524 1 1451 21790 24 1 1 chr3 113567788 113571023 -46028760 - L1Md_T LINE L1 0 6582 3348 1 1451 9289 76 8 0 chr3 113571022 113572252 -46027531 + L1Md_F2 LINE L1 4346 5585 -298 1 1451 7563 68 6 3 chr3 113572253 113573246 -46026537 + L1Md_F2 LINE L1 5587 6582 0 1 1451 31 0 0 0 chr3 113573247 113573278 -46026505 + AT_rich Low_complexity Low_complexity 1 31 0 1 1451 27 29 0 0 chr3 113573603 113573637 -46026146 + AT_rich Low_complexity Low_complexity 1 34 0 1 1451 2090 242 52 20 chr3 113573746 113574337 -46025446 + Lx7 LINE L1 6727 7336 -360 1 1451 231 36 0 0 chr3 113575337 113575365 -46024418 + (TG)n Simple_repeat Simple_repeat 1 28 0 1 1451 476 89 0 12 chr3 113575365 113575445 -46024338 + (GA)n Simple_repeat Simple_repeat 2 80 0 1 1451 236 277 711 24 chr3 113575448 113575619 -46024164 - B4 SINE B4 -2 290 3 1 1451 410 315 67 12 chr3 113575678 113575842 -46023941 + MLT1B LTR MaLR 191 363 -27 1 1451 208 232 14 28 chr3 113576620 113576691 -46023092 + GA-rich Low_complexity Low_complexity 2 71 0 1 1451 1107 80 0 0 chr3 113577312 113577463 -46022320 + (CA)n Simple_repeat Simple_repeat 1 151 0 1 1451 239 247 155 41 chr3 113579211 113579308 -46020475 - MLT1A1 LTR MaLR -297 111 4 1 1451 6164 84 25 0 chr3 113579375 113580223 -46019560 + L1_Mus3 LINE L1 5764 6632 -6 1 1451 1774 251 10 73 chr3 113580271 113580790 -46018993 + RMER19C LTR ERVK 126 611 0 1 1451 21 0 0 0 chr3 113580885 113580906 -46018877 + AT_rich Low_complexity Low_complexity 1 21 0 1 1451 242 338 26 51 chr3 113581077 113581233 -46018550 + RSINE1 SINE B4 1 152 -13 1 1451 6324 208 20 11 chr3 113581253 113582499 -46017284 - Lx5 LINE L1 -143 6907 5644 1 1451 798 11 0 0 chr3 113582499 113582590 -46017193 + (GTATG)n Simple_repeat Simple_repeat 2 92 0 1 1451 6324 163 98 0 chr3 113582590 113582675 -46017108 - Lx5 LINE L1 -1407 5643 5522 1 1451 5381 133 10 95 chr3 113582672 113583719 -46016064 - Lx5 LINE L1 -1051 4826 3869 1 1451 1818 167 60 0 chr3 113583721 113584057 -46015726 + L1_Mur2 LINE L1 5196 5551 -326 1 1451 769 235 216 25 chr3 113584385 113584560 -46015223 - ORR1C2 LTR MaLR 0 384 169 1 1451 963 40 0 0 chr3 113584560 113584684 -46015099 + (GA)n Simple_repeat Simple_repeat 1 124 0 1 1451 769 235 216 25 chr3 113584684 113584827 -46014956 - ORR1C2 LTR MaLR -216 168 6 1 1451 2926 145 51 6 chr3 113585747 113586254 -46013529 - Lx2 LINE L1 0 6997 6468 1 1451 1132 108 12 0 chr3 113586580 113586747 -46013036 + Lx3A LINE L1 6331 6499 -510 1 1451 1295 157 13 13 chr3 113586747 113586986 -46012797 + Lx3A LINE L1 6733 6971 -10 1 1451 705 318 10 20 chr3 113587090 113587289 -46012494 - B3 SINE B2 0 216 20 1 1451 814 286 5 0 chr3 113587329 113587532 -46012251 + B3 SINE B2 1 204 -12 1 1451 515 259 29 15 chr3 113588265 113588402 -46011381 - Lx6 LINE L1 -328 7132 6994 1 1451 1413 202 36 19 chr3 113588402 113588740 -46011043 - RMER19A LTR ERVK -361 376 1 1 1451 221 258 0 0 chr3 113589025 113589087 -46010696 + T-rich Low_complexity Low_complexity 1 62 0 1 1451 1202 234 88 30 chr3 113589703 113590034 -46009749 - ORR1D1 LTR MaLR 0 374 25 1 1451 1074 109 0 0 chr3 113590125 113590272 -46009511 - B1_Mus2 SINE Alu 0 147 1 1 1451 1173 56 0 0 chr3 113590615 113590759 -46009024 + B1_Mus2 SINE Alu 4 147 0 1 1451 233 89 22 0 chr3 113590759 113590804 -46008979 + (CAAAA)n Simple_repeat Simple_repeat 1 46 0 1 1451 533 152 120 8 chr3 113591077 113591210 -46008573 + Lx4A LINE L1 6911 7058 0 1 1451 662 304 46 46 chr3 113591635 113592139 -46007644 - L1ME1 LINE L1 0 6179 5676 1 1451 653 144 8 0 chr3 113592431 113592549 -46007234 + (TA)n Simple_repeat Simple_repeat 2 120 0 1 1451 1800 234 53 5 chr3 113592808 113593182 -46006601 + Lx5 LINE L1 6511 6902 -148 1 1451 477 337 92 24 chr3 113593407 113593744 -46006039 + MLT1C LTR MaLR 63 422 -45 1 1451 224 200 18 0 chr3 113593966 113594021 -46005762 + (TA)n Simple_repeat Simple_repeat 1 56 0 1 1451 17052 8 1 43 chr3 113594030 113596117 -46003666 + L1Md_A LINE L1 3588 5586 -297 1 1451 8782 16 0 0 chr3 113596117 113597113 -46002670 + L1Md_A LINE L1 5587 6582 0 1 1451 215 204 0 18 chr3 113597167 113597222 -46002561 + (TA)n Simple_repeat Simple_repeat 1 54 0 1 1451 308 360 57 45 chr3 113597587 113597744 -46002039 - B4A SINE B4 -130 162 4 1 1451 902 290 82 26 chr3 113597840 113598229 -46001554 - Tigger1 DNA MER2_type -734 1684 1274 1 1451 4173 130 4 43 chr3 113598585 113598744 -46001039 + Lx3A LINE L1 5213 5374 -512 1 1451 6850 104 20 17 chr3 113598744 113599819 -45999964 + Lx3_Mus LINE L1 5923 7001 -8 1 1451 4173 130 3 34 chr3 113599819 113600501 -45999282 + Lx3A LINE L1 5375 6023 -958 1 1451 3840 106 28 31 chr3 113600520 113601123 -45998660 + Lx3A LINE L1 6375 6975 -6 1 1451 1052 75 0 7 chr3 113601129 113601277 -45998506 + (GAA)n Simple_repeat Simple_repeat 2 148 0 1 1451 26 0 0 0 chr3 113601831 113601857 -45997926 + AT_rich Low_complexity Low_complexity 1 26 0 1 1451 191 352 54 36 chr3 113602030 113602142 -45997641 + MIRm SINE MIR 60 173 -103 1 1451 21 36 0 0 chr3 113602430 113602458 -45997325 + AT_rich Low_complexity Low_complexity 1 28 0 1 1451 272 307 143 0 chr3 113602770 113602910 -45996873 + RMER20B LTR ERVK 180 339 -288 1 1451 21 0 0 0 chr3 113603313 113603334 -45996449 + AT_rich Low_complexity Low_complexity 1 21 0 1 1451 4374 59 11 14 chr3 113603753 113604319 -45995464 + LTRIS2 LTR ERV1 1 564 0 1 1451 533 325 80 73 chr3 113604505 113604794 -45994989 - B4A SINE B4 0 292 2 1 1451 234 364 19 20 chr3 113605989 113606170 -45993613 - MIR SINE MIR -51 217 38 1 1451 237 98 0 0 chr3 113607123 113607164 -45992619 + (CAGA)n Simple_repeat Simple_repeat 2 42 0 1 1451 22 94 0 0 chr3 113607172 113607236 -45992547 + AT_rich Low_complexity Low_complexity 1 64 0 1 1451 246 250 62 0 chr3 113607983 113608047 -45991736 - B1_Mus2 SINE Alu -79 68 1 1 1451 232 229 21 0 chr3 113608004 113608052 -45991731 - ID_B1 SINE B4 -100 124 76 1 1451 2863 193 28 21 chr3 113608052 113608670 -45991113 - ORR1B2-int LTR MaLR -887 622 1 1 1451 1331 223 62 37 chr3 113608670 113609024 -45990759 - ORR1B2 LTR MaLR 0 367 5 1 1451 1307 236 78 46 chr3 113609024 113609353 -45990430 - ORR1C2 LTR MaLR -18 366 25 1 1451 247 289 94 19 chr3 113609721 113609827 -45989956 - MLT1A1 LTR MaLR 0 408 295 1 1451 570 264 10 73 chr3 113610063 113610255 -45989528 - MTD LTR MaLR 0 419 240 1 1451 419 292 44 0 chr3 113610388 113610501 -45989282 - MTD LTR MaLR -51 368 251 1 1451 396 299 0 0 chr3 113610495 113610592 -45989191 + MTD LTR MaLR 227 323 -96 1 1451 532 303 123 4 chr3 113610665 113610900 -45988883 - B4A SINE B4 -24 268 6 1 1451 226 213 98 0 chr3 113611325 113611386 -45988397 + Lx9 LINE L1 7089 7155 -489 1 1451 556 356 11 0 chr3 113611568 113611829 -45987954 + Lx9 LINE L1 7207 7470 -174 1 1451 1417 108 40 0 chr3 113613910 113614133 -45985650 + Lx2 LINE L1 6764 6995 -2 1 1451 383 284 19 45 chr3 113614894 113615049 -45984734 + L1MB8 LINE L1 6009 6159 -19 1 1451 274 319 0 78 chr3 113615052 113615181 -45984602 - PB1D9 SINE Alu -1 119 1 1 1451 381 221 65 28 chr3 113615593 113615700 -45984083 - RLTR17 LTR ERVK -74 618 508 1 1451 1414 222 12 30 chr3 113615698 113616067 -45983716 - RLTR17 LTR ERVK -251 441 106 1 1451 22 56 0 0 chr3 113616136 113616172 -45983611 + AT_rich Low_complexity Low_complexity 1 36 0 1 1451 194 192 19 0 chr3 113616990 113617042 -45982741 + (TG)n Simple_repeat Simple_repeat 1 53 0 1 1451 6809 100 97 4 chr3 113617408 113618484 -45981299 + Lx2 LINE L1 5822 6997 0 1 1451 926 259 67 56 chr3 113618915 113619083 -45980700 - RMER17C LTR ERVK -33 377 219 1 1451 569 14 0 14 chr3 113619083 113619154 -45980629 + (GA)n Simple_repeat Simple_repeat 2 71 0 1 1451 926 259 67 56 chr3 113619154 113619358 -45980425 - RMER17C LTR ERVK -192 218 1 1 1451 2513 163 129 7 chr3 113619360 113619933 -45979850 - RMER17C-int LTR ERVK -2 3236 2594 1 1451 7542 60 10 8 chr3 113619938 113620911 -45978872 - L1Md_F2 LINE L1 -4 6578 5604 1 1451 5429 170 45 61 chr3 113620911 113622347 -45977436 - RMER17C-int LTR ERVK -644 2594 1278 1 1451 232 365 88 68 chr3 113622347 113622494 -45977289 - LTR88c LTR Genie? -160 702 553 1 1451 494 285 76 80 chr3 113622673 113622924 -45976859 - RLTR16 LTR ERVK -232 296 32 1 1451 571 170 15 22 chr3 113622938 113623045 -45976738 - RMER17C-int LTR ERVK -1992 1246 1100 1 1451 639 158 10 0 chr3 113623095 113623196 -45976587 + Lx2B LINE L1 5696 5797 -1203 1 1451 423 0 0 0 chr3 113623660 113623707 -45976076 + (CA)n Simple_repeat Simple_repeat 1 47 0 1 1451 1808 243 49 87 chr3 113624820 113625477 -45974306 - RMER17C-int LTR ERVK -2606 632 1 1 1451 182 59 18 89 chr3 113625480 113625536 -45974247 + T-rich Low_complexity Low_complexity 2 53 0 1 1451 1221 176 11 140 chr3 113625549 113625986 -45973797 - RMER17C LTR ERVK -29 381 1 1 1451 607 251 335 16 chr3 113626400 113626641 -45973142 - MTE2b LTR MaLR -4 375 58 1 1451 1940 186 3 3 chr3 113626704 113627048 -45972735 + Lx5 LINE L1 6360 6703 -347 1 1451 2055 138 39 3 chr3 113627075 113627432 -45972351 - L1_Mur2 LINE L1 -1661 4216 3847 1 1451 4325 151 19 49 chr3 113627432 113628210 -45971573 + Lx2A LINE L1 6201 6955 -53 1 1451 10348 14 0 2 chr3 113628193 113629380 -45970403 + L1Md_T LINE L1 4402 5586 -297 1 1451 8421 34 0 0 chr3 113629380 113630375 -45969408 + L1Md_T LINE L1 5587 6581 -1 1 1451 528 122 0 10 chr3 113630375 113630474 -45969309 + Lx2A LINE L1 6909 7006 -2 1 1451 873 297 115 6 chr3 113630518 113630857 -45968926 - MTEa LTR MaLR -3 376 1 1 1451 182 288 80 27 chr3 113631097 113631172 -45968611 + MER5A DNA MER1_type 3 81 -108 1 1451 308 282 17 8 chr3 113632235 113632353 -45967430 + L1M5 LINE L1 5363 5481 -692 1 1451 190 0 67 0 chr3 113632384 113632414 -45967369 + (TTTTTG)n Simple_repeat Simple_repeat 4 35 0 1 1451 1252 34 0 0 chr3 113632414 113632561 -45967222 - B1_Mm SINE Alu 0 147 1 1 1451 22 88 0 0 chr3 113632639 113632696 -45967087 + AT_rich Low_complexity Low_complexity 1 57 0 1 1451 32 26 0 0 chr3 113633096 113633135 -45966648 + AT_rich Low_complexity Low_complexity 1 39 0 1 1451 991 244 45 24 chr3 113633135 113633540 -45966243 - MT2A LTR ERVL -74 459 2 1 1451 409 235 12 0 chr3 113633557 113633642 -45966141 - B1F SINE Alu -61 88 3 1 1451 27 29 0 0 chr3 113634516 113634550 -45965233 + AT_rich Low_complexity Low_complexity 1 34 0 1 1451 711 268 47 33 chr3 113635268 113635480 -45964303 - B3 SINE B2 0 216 2 2 1451 22 56 0 0 chr3 113636042 113636078 -45963705 + AT_rich Low_complexity Low_complexity 1 36 0 2 1451 198 103 0 0 chr3 113636573 113636602 -45963181 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 2 1451 1227 270 27 24 chr3 113637728 113637905 -45961878 - MTEb LTR MaLR -45 334 162 2 1451 1777 184 0 28 chr3 113637905 113638268 -45961515 - Lx LINE L1 -1 6653 6301 2 1451 1227 270 27 24 chr3 113638268 113638420 -45961363 - MTEb LTR MaLR -218 161 5 2 1451 600 59 0 0 chr3 113638804 113638889 -45960894 + (TC)n Simple_repeat Simple_repeat 2 86 0 2 1451 597 14 0 0 chr3 113638889 113638958 -45960825 + (TG)n Simple_repeat Simple_repeat 1 70 0 2 181 353 246 138 42 chr3 113639409 113639566 -45960217 - RMER13A LTR ERVK -389 519 320 2 1452 474 18 0 0 chr3 113639566 113639621 -45960162 + (CA)n Simple_repeat Simple_repeat 1 55 0 2 1452 391 316 39 54 chr3 113639621 113639744 -45960039 - RMER13A LTR ERVK -659 201 80 2 1452 3056 42 0 3 chr3 113639744 113640124 -45959659 - L1Md_F3 LINE L1 0 6584 6206 2 1452 391 316 39 54 chr3 113640124 113640204 -45959579 - RMER13A LTR ERVK -781 79 2 2 1452 6064 193 47 52 chr3 113640222 113641599 -45958184 - Lx5 LINE L1 -3 7047 5678 2 1452 180 0 0 0 chr3 113641628 113641648 -45958135 + (CA)n Simple_repeat Simple_repeat 1 20 0 2 1452 2645 103 13 3 chr3 113641649 113642037 -45957746 + L1_Mus3 LINE L1 6235 6626 -12 2 1452 431 269 56 0 chr3 113642044 113642152 -45957631 - ID_B1 SINE B4 -105 119 6 2 1452 379 291 83 28 chr3 113642476 113642621 -45957162 + MER82 DNA MER2_type 210 362 -291 2 1452 480 371 0 19 chr3 113642645 113642799 -45956984 - RSINE1 SINE B4 -8 157 7 2 1452 275 356 100 4 chr3 113642805 113643045 -45956738 - L2a LINE L2 -235 3191 2929 2 1452 347 296 101 65 chr3 113643531 113643730 -45956053 + B3 SINE B2 4 209 -7 2 1452 258 409 47 0 chr3 113643791 113643940 -45955843 - LTR33 LTR ERVL -2 513 358 2 1452 229 305 61 0 chr3 113644116 113644198 -45955585 - LTR33 LTR ERVL -403 112 26 2 1452 313 289 29 82 chr3 113644727 113644826 -45954957 + MLT2B2 LTR ERVL 401 499 -63 2 1452 334 325 0 17 chr3 113644826 113644942 -45954841 - PB1D10 SINE Alu 0 117 4 2 1452 313 289 29 82 chr3 113644942 113645012 -45954771 + MLT2B2 LTR ERVL 500 561 -1 2 1452 356 368 95 58 chr3 113645523 113645797 -45953986 + B4 SINE B4 1 284 -8 2 1452 360 0 0 0 chr3 113645928 113645968 -45953815 + (TC)n Simple_repeat Simple_repeat 2 41 0 2 1452 599 326 12 100 chr3 113646051 113646392 -45953391 - Lx9 LINE L1 -342 7302 6992 2 1452 4071 79 54 3 chr3 113646394 113646965 -45952818 - L1_Mus1 LINE L1 -1 6566 5967 2 1452 1457 82 0 0 chr3 113646965 113647161 -45952622 + L1_Mus1 LINE L1 5772 5967 -599 2 1452 261 0 0 0 chr3 113647321 113647350 -45952433 + (CA)n Simple_repeat Simple_repeat 2 30 0 2 1452 21 36 0 0 chr3 113647545 113647573 -45952210 + AT_rich Low_complexity Low_complexity 1 28 0 2 1452 204 111 36 18 chr3 113647576 113647631 -45952152 + (TATAA)n Simple_repeat Simple_repeat 5 60 0 2 1452 217 250 21 0 chr3 113647667 113647715 -45952068 + RSINE1 SINE B4 83 131 -34 2 1452 447 19 0 0 chr3 113647724 113647776 -45952007 + (TAA)n Simple_repeat Simple_repeat 2 53 0 2 1452 209 382 24 31 chr3 113648094 113648221 -45951562 - L3 LINE CR1 -414 4075 3950 2 1452 3877 28 2 0 chr3 113649038 113649495 -45950288 - L1Md_A LINE L1 0 6582 6125 2 1452 2694 16 0 0 chr3 113649495 113649809 -45949974 + L1_Mm LINE L1 3514 3827 -2056 2 1452 21 57 0 0 chr3 113650205 113650240 -45949543 + AT_rich Low_complexity Low_complexity 1 35 0 2 1452 269 373 196 26 chr3 113650320 113650590 -45949193 - MLT1E3 LTR MaLR -3 621 306 2 1452 204 303 0 15 chr3 113651604 113651618 -45948165 + polypyrimidine Low_complexity Low_complexity 53 66 0 2 1452 270 116 0 0 chr3 113651618 113651661 -45948122 + (TG)n Simple_repeat Simple_repeat 2 44 0 2 1452 204 303 0 15 chr3 113651661 113651713 -45948070 + polypyrimidine Low_complexity Low_complexity 2 52 0 2 1452 675 298 49 0 chr3 113651921 113652126 -45947657 + ID_B1 SINE B4 5 219 -5 2 1452 234 0 0 0 chr3 113653270 113653296 -45946487 + (TA)n Simple_repeat Simple_repeat 2 27 0 2 1452 207 204 0 0 chr3 113654165 113654209 -45945574 + CT-rich Low_complexity Low_complexity 1 44 0 2 1452 181 333 78 10 chr3 113654589 113654692 -45945091 - MIR3 SINE MIR -97 111 2 2 1452 371 282 80 18 chr3 113654870 113654982 -45944801 + B4A SINE B4 2 120 -172 2 1452 340 277 39 63 chr3 113654995 113655056 -45944727 + B4A SINE B4 163 221 -71 2 1452 718 41 20 0 chr3 113655056 113655154 -45944629 + (TAGA)n Simple_repeat Simple_repeat 1 100 0 2 1452 340 277 39 63 chr3 113655154 113655219 -45944564 + B4A SINE B4 222 286 -6 2 1452 255 31 0 0 chr3 113655251 113655283 -45944500 + (CA)n Simple_repeat Simple_repeat 1 32 0 2 1452 29 0 0 0 chr3 113657180 113657209 -45942574 + AT_rich Low_complexity Low_complexity 1 29 0 2 1452 715 292 112 8 chr3 113658647 113658906 -45940877 + B4A SINE B4 5 290 -2 2 1452 355 250 0 59 chr3 113659058 113659160 -45940623 - RMER12 LTR ERVK -469 853 758 2 1452 361 135 42 0 chr3 113659295 113659391 -45940392 + (CAGAGA)n Simple_repeat Simple_repeat 2 101 0 2 1452 542 54 14 0 chr3 113659446 113659520 -45940263 + (TTCTC)n Simple_repeat Simple_repeat 2 76 0 2 1452 205 152 21 21 chr3 113660341 113660388 -45939395 + A-rich Low_complexity Low_complexity 6 52 0 2 1452 204 182 0 0 chr3 113660588 113660632 -45939151 + (TATG)n Simple_repeat Simple_repeat 1 44 0 2 1452 6193 48 15 11 chr3 113660721 113660851 -45938932 - RLTR13C2 LTR ERVK 0 808 676 2 1452 2830 78 10 5 chr3 113660851 113661237 -45938546 + RLTR10 LTR ERVK 1 388 -2 2 1452 6193 48 15 11 chr3 113661237 113661911 -45937872 - RLTR13C2 LTR ERVK -133 675 1 2 1452 708 152 7 14 chr3 113661931 113662078 -45937705 - Lx2A1 LINE L1 -2 7006 6861 2 1452 4097 65 2 2 chr3 113662131 113662643 -45937140 + RLTR1B LTR ERV1 1 512 0 2 1452 227 277 21 0 chr3 113663410 113663457 -45936326 - ID4_ SINE ID 0 83 36 2 1452 359 267 124 8 chr3 113663509 113663630 -45936153 - ID_B1 SINE B4 -8 216 82 2 1452 583 236 39 0 chr3 113663957 113664084 -45935699 + B1_Mus2 SINE Alu 5 136 -11 2 1452 1941 251 82 4 chr3 113664084 113664611 -45935172 + Lx7 LINE L1 6478 7045 -651 2 1452 2994 115 57 0 chr3 113664619 113665096 -45934687 + Lx3B LINE L1 5942 6445 -528 2 1452 653 143 9 0 chr3 113665091 113665203 -45934580 - L1_Mur1 LINE L1 -1185 4701 4589 2 1452 1823 164 40 65 chr3 113665454 113665851 -45933932 + MERVL_2A-int LTR ERVL 2670 3056 -2705 2 1452 1024 188 15 30 chr3 113665851 113666054 -45933729 + MTC LTR MaLR 222 421 0 2 1452 276 102 0 0 chr3 113666707 113666756 -45933027 + (T)n Simple_repeat Simple_repeat 1 49 0 2 1452 8479 21 0 2 chr3 113666759 113668330 -45931453 - L1Md_T LINE L1 -3 6579 5014 2 1452 771 260 116 12 chr3 113669624 113669885 -45929898 + Lx6 LINE L1 6386 6887 -573 2 1452 954 295 25 7 chr3 113669900 113670180 -45929603 + Lx6 LINE L1 7136 7420 -40 2 1452 21 0 0 0 chr3 113670273 113670294 -45929489 + AT_rich Low_complexity Low_complexity 1 21 0 2 1452 551 311 18 30 chr3 113670546 113670712 -45929071 - B4A SINE B4 -128 164 1 2 1452 597 206 149 44 chr3 113670741 113670990 -45928793 - Lx9 LINE L1 0 7644 7370 2 1452 23 68 0 0 chr3 113671033 113671077 -45928706 + AT_rich Low_complexity Low_complexity 1 44 0 2 1452 257 321 204 36 chr3 113671077 113671439 -45928344 - L1MD2 LINE L1 -251 6108 5686 2 1452 1003 334 35 26 chr3 113671751 113672175 -45927608 + Lx9 LINE L1 6764 7191 -453 2 1452 395 240 125 0 chr3 113672330 113672426 -45927357 + PB1D10 SINE Alu 9 116 -1 2 1452 3237 219 53 63 chr3 113673612 113674145 -45925638 + Lx7 LINE L1 6755 7316 -380 2 1452 450 0 0 0 chr3 113674145 113674195 -45925588 + (TG)n Simple_repeat Simple_repeat 1 50 0 2 1452 3237 219 53 63 chr3 113674195 113674563 -45925220 + Lx7 LINE L1 7317 7647 -49 2 1452 266 189 58 83 chr3 113674546 113674667 -45925116 + Lx7 LINE L1 7578 7695 -1 2 1452 257 328 74 98 chr3 113675463 113675666 -45924117 + B4A SINE B4 11 208 -84 2 1452 29 47 0 0 chr3 113675739 113675782 -45924001 + AT_rich Low_complexity Low_complexity 1 43 0 2 1452 335 390 40 28 chr3 113676359 113676757 -45923026 + L1ME3B LINE L1 5593 5995 -245 2 1452 2777 325 114 30 chr3 113677901 113678452 -45921331 + Lx8 LINE L1 5593 6186 -1287 2 1452 441 36 0 0 chr3 113678452 113678507 -45921276 + (CA)n Simple_repeat Simple_repeat 2 56 0 2 1452 2777 325 114 30 chr3 113678507 113679654 -45920129 + Lx8 LINE L1 6187 7433 -40 2 1452 26 0 0 0 chr3 113679675 113679701 -45920082 + AT_rich Low_complexity Low_complexity 1 26 0 2 1452 3131 132 53 19 chr3 113679803 113680334 -45919449 + Lx3A LINE L1 6418 6966 -15 2 1452 1016 85 12 18 chr3 113680336 113680504 -45919279 + (GGAA)n Simple_repeat Simple_repeat 3 169 0 2 1452 8035 92 16 15 chr3 113680768 113682220 -45917563 - L1Md_F2 LINE L1 0 6973 5529 2 1452 3965 77 2 0 chr3 113682219 113682749 -45917034 + L1_Mm LINE L1 4773 5303 -580 2 1452 35815 30 1 7 chr3 113682747 113687681 -45912102 + L1Md_T LINE L1 648 5543 -340 2 1452 7313 32 0 0 chr3 113687681 113688543 -45911240 + L1Md_T LINE L1 5721 6582 0 2 1452 2360 42 0 0 chr3 113688543 113688827 -45910956 + L1_Mm LINE L1 5290 5573 -310 2 1452 2280 140 0 0 chr3 113688823 113689158 -45910625 - Lx3B LINE L1 -391 6582 6248 2 1452 8489 30 1 0 chr3 113689176 113690325 -45909458 - L1Md_T LINE L1 -1 6581 5432 2 1452 247 197 52 13 chr3 113691950 113692027 -45907756 + T-rich Low_complexity Low_complexity 1 80 0 2 1452 414 246 33 16 chr3 113692227 113692311 -45907472 - RMER17C LTR ERVK -135 275 190 2 1452 243 0 0 0 chr3 113692311 113692338 -45907445 + (CA)n Simple_repeat Simple_repeat 2 28 0 2 1452 387 0 0 0 chr3 113692338 113692380 -45907403 + (GA)n Simple_repeat Simple_repeat 2 44 0 2 1452 414 246 33 16 chr3 113692380 113692476 -45907307 - RMER17C LTR ERVK -221 189 93 2 1452 219 36 0 0 chr3 113693029 113693057 -45906726 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 2 1452 402 320 60 20 chr3 113693119 113693368 -45906415 - MER57D LTR ERV1 0 411 153 2 1452 180 0 0 0 chr3 113694142 113694162 -45905621 + (T)n Simple_repeat Simple_repeat 1 20 0 2 1452 440 287 9 36 chr3 113694449 113694561 -45905222 - B1F SINE Alu -11 138 30 2 1452 423 0 0 0 chr3 113694941 113694988 -45904795 + (TC)n Simple_repeat Simple_repeat 1 47 0 2 1452 265 229 0 0 chr3 113695013 113695074 -45904709 + CT-rich Low_complexity Low_complexity 1 61 0 2 1452 2091 243 26 21 chr3 113695146 113695676 -45904107 - Lx7 LINE L1 -281 7415 6883 3 1452 2210 327 65 34 chr3 113696548 113697595 -45902188 - Lx8 LINE L1 -10 7463 6385 3 1452 3217 122 8 12 chr3 113698021 113698520 -45901263 - Lx LINE L1 -6 6648 6152 3 1452 572 67 100 0 chr3 113698520 113698610 -45901173 - RLTR31A_Mm LTR ERVK -485 99 1 3 1452 380 284 76 25 chr3 113699214 113699333 -45900450 - B4 SINE B4 -167 125 1 3 1452 476 267 12 80 chr3 113699395 113699558 -45900225 - RSINE1 SINE B4 0 165 14 3 1452 1654 86 8 12 chr3 113699586 113699833 -45899950 - L1_Mus3 LINE L1 0 6638 6393 3 1452 396 386 36 44 chr3 113699986 113700308 -45899475 + MTE2a LTR MaLR 16 365 -14 3 1452 2572 185 65 20 chr3 113704874 113705425 -45894358 + RMER6C LTR ERVK 115 690 0 3 1452 1119 68 0 45 chr3 113706219 113706373 -45893410 + B1_Mus2 SINE Alu 1 147 0 3 1452 4247 139 78 19 chr3 113707308 113708808 -45890975 + L1Md_F LINE L1 177 1768 -4115 3 1452 10162 116 11 5 chr3 113708808 113710372 -45889411 + L1Md_F LINE L1 4256 5829 -54 3 1452 6567 64 13 1 chr3 113710367 113711194 -45888589 + L1_Mus1 LINE L1 5731 6567 0 3 1452 228 161 0 0 chr3 113711202 113711264 -45888519 + A-rich Low_complexity Low_complexity 1 62 0 3 1452 681 200 85 0 chr3 113711602 113711732 -45888051 - B1_Mur4 SINE Alu -5 145 5 3 1452 954 144 7 0 chr3 113711814 113711960 -45887823 + B1_Mus2 SINE Alu 1 147 0 3 1452 383 349 9 0 chr3 113712275 113712381 -45887402 + ID_B1 SINE B4 81 187 -37 3 1452 24 0 0 0 chr3 113713684 113713708 -45886075 + AT_rich Low_complexity Low_complexity 1 24 0 3 1452 23 0 0 0 chr3 113713790 113713813 -45885970 + AT_rich Low_complexity Low_complexity 1 23 0 3 1452 470 180 131 0 chr3 113714424 113714546 -45885237 + RMER3D-int LTR ERVK 2733 2841 -1 3 1452 2188 132 111 3 chr3 113714546 113714934 -45884849 + BGLII_B LTR ERVK 1 430 -11 3 1452 380 346 31 31 chr3 113716020 113716181 -45883602 - RSINE1 SINE B4 -2 163 3 3 1452 336 311 128 29 chr3 113716826 113716998 -45882785 + MLT1H-int LTR MaLR 3 191 -1218 3 1452 2404 189 182 19 chr3 113717078 113717673 -45882110 - RLTR17 LTR ERVK 0 692 1 3 1452 357 62 0 0 chr3 113717763 113717811 -45881972 + (CA)n Simple_repeat Simple_repeat 2 49 0 3 1452 239 293 202 0 chr3 113718025 113718124 -45881659 - MER21B LTR ERV1 -316 547 429 3 1452 1149 118 0 0 chr3 113718142 113718320 -45881463 + (TC)n Simple_repeat Simple_repeat 2 179 0 3 1452 1412 243 34 18 chr3 113718330 113718715 -45881068 + MTD LTR MaLR 29 419 0 3 1452 1280 235 122 39 chr3 113718909 113719294 -45880489 + MTD LTR MaLR 1 417 -2 3 1452 2047 221 34 38 chr3 113719850 113720326 -45879457 + RMER19C LTR ERVK 138 611 0 3 1452 1981 157 22 30 chr3 113720451 113720819 -45878964 + ORR1B2 LTR MaLR 3 367 0 3 1452 23 0 0 0 chr3 113722247 113722270 -45877513 + AT_rich Low_complexity Low_complexity 1 23 0 3 1452 859 142 14 0 chr3 113723045 113723193 -45876590 - IAPLTR4_I LTR ERVK 0 332 183 3 1452 10409 54 36 3 chr3 113723193 113724694 -45875089 - IAPLTR4_I LTR ERVK -6149 1531 76 3 1452 1019 174 38 6 chr3 113724713 113724935 -45874848 - IAPEY3_LTR LTR ERVK -149 236 1 3 1452 3566 47 11 15 chr3 113724960 113725455 -45874328 - L1Md_F2 LINE L1 0 6582 6128 3 1452 318 299 111 39 chr3 113726335 113726488 -45873295 - RSINE1 SINE B4 0 165 2 3 1452 1003 90 0 0 chr3 113727296 113727429 -45872354 + B1_Mus1 SINE Alu 1 133 -15 3 1452 279 0 0 0 chr3 113727443 113727474 -45872309 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 3 1452 7503 57 12 25 chr3 113727999 113728991 -45870792 + L1_Mus2 LINE L1 5588 6566 0 3 1452 513 32 0 0 chr3 113729353 113729416 -45870367 + (TG)n Simple_repeat Simple_repeat 1 63 0 3 1452 569 230 35 0 chr3 113729416 113729529 -45870254 - B3A SINE B2 -52 146 30 3 1452 351 44 0 0 chr3 113730174 113730219 -45869564 + (TG)n Simple_repeat Simple_repeat 1 45 0 3 1452 225 0 0 0 chr3 113731888 113731913 -45867870 + (TTTG)n Simple_repeat Simple_repeat 4 28 0 3 1452 336 64 0 0 chr3 113736518 113736565 -45863218 + (CA)n Simple_repeat Simple_repeat 1 47 0 3 1452 196 146 18 35 chr3 113736568 113736625 -45863158 + GA-rich Low_complexity Low_complexity 1 56 0 3 1452 267 256 26 0 chr3 113738240 113738318 -45861465 + (TA)n Simple_repeat Simple_repeat 2 81 0 3 1452 186 209 0 0 chr3 113739084 113739127 -45860656 + CT-rich Low_complexity Low_complexity 3 45 0 3 1452 1352 37 0 0 chr3 113740513 113740677 -45859106 - B2_Mm2 SINE B2 -31 164 1 3 1452 333 360 0 20 chr3 113741764 113741917 -45857866 + CT-rich Low_complexity Low_complexity 1 150 0 3 1452 639 228 50 22 chr3 113741917 113742056 -45857727 - B1_Mur1 SINE Alu -1 148 6 3 1452 855 78 0 0 chr3 113742060 113742176 -45857607 + (TTTTC)n Simple_repeat Simple_repeat 4 119 0 3 1452 530 356 70 22 chr3 113742179 113742452 -45857331 - B4 SINE B4 -4 288 3 3 1452 21 0 0 0 chr3 113742793 113742814 -45856969 + AT_rich Low_complexity Low_complexity 1 21 0 3 1452 222 233 0 0 chr3 113742968 113743028 -45856755 + (CATATA)n Simple_repeat Simple_repeat 6 65 0 3 1452 1152 101 11 11 chr3 113744434 113744615 -45855168 - L1_Mus3 LINE L1 -4 6634 6454 3 1452 429 359 75 93 chr3 113744887 113745566 -45854217 + L2 LINE L2 2306 2972 -447 3 1452 1129 0 7 14 chr3 113746261 113746399 -45853384 + (TTTCC)n Simple_repeat Simple_repeat 4 140 0 3 1452 898 110 14 0 chr3 113746400 113746546 -45853237 + (TTTC)n Simple_repeat Simple_repeat 2 149 0 3 1452 1120 43 0 0 chr3 113746547 113746686 -45853097 - B1_Mm SINE Alu 0 147 9 3 1452 422 249 45 90 chr3 113746574 113746751 -45853032 - MT2B LTR ERVL -325 276 108 3 1452 21 36 0 0 chr3 113746918 113746946 -45852837 + AT_rich Low_complexity Low_complexity 1 28 0 3 1452 712 212 206 0 chr3 113747364 113747534 -45852249 - B3 SINE B2 -8 208 4 3 1452 25 31 0 0 chr3 113747543 113747575 -45852208 + AT_rich Low_complexity Low_complexity 1 32 0 3 1452 442 257 26 0 chr3 113747679 113747792 -45851991 - B3 SINE B2 -97 119 4 3 1452 656 238 32 0 chr3 113747805 113747931 -45851852 - B1F SINE Alu -5 144 15 3 1452 23 33 0 0 chr3 113747980 113748010 -45851773 + AT_rich Low_complexity Low_complexity 1 30 0 3 1452 27 0 0 0 chr3 113748196 113748223 -45851560 + AT_rich Low_complexity Low_complexity 1 27 0 3 1452 582 103 0 0 chr3 113748411 113748498 -45851285 + (CA)n Simple_repeat Simple_repeat 2 88 0 3 1452 2835 285 84 101 chr3 113748500 113748862 -45850921 - Lx7 LINE L1 -388 7308 6910 3 1452 441 66 0 0 chr3 113748862 113748923 -45850860 + (TG)n Simple_repeat Simple_repeat 2 62 0 3 1452 2835 285 84 101 chr3 113748923 113750076 -45849707 - Lx7 LINE L1 -787 6909 5818 3 1452 242 244 11 58 chr3 113750080 113750167 -45849616 - Lx8 LINE L1 -610 7034 6952 3 1452 447 258 112 28 chr3 113750163 113750307 -45849476 - Lx8 LINE L1 -768 6876 6592 3 1452 4298 46 0 0 chr3 113750307 113750827 -45848956 - L1Md_T LINE L1 -2 6580 6061 3 1452 411 263 82 77 chr3 113750827 113750877 -45848906 - Lx8 LINE L1 -916 6728 6682 3 1452 5884 61 4 11 chr3 113750872 113751633 -45848150 + L1Md_F2 LINE L1 5830 6582 0 3 1452 5884 61 4 11 chr3 113751633 113751658 -45848125 + L1Md_F2 LINE L1 6558 6582 0 3 1452 636 281 79 0 chr3 113751665 113751843 -45847940 - Lx8 LINE L1 -928 6545 6354 3 1452 513 307 153 40 chr3 113752205 113752453 -45847330 + B4A SINE B4 15 290 -2 3 1452 29 47 0 0 chr3 113752703 113752746 -45847037 + AT_rich Low_complexity Low_complexity 1 43 0 3 1452 459 0 0 0 chr3 113753040 113753091 -45846692 + (TG)n Simple_repeat Simple_repeat 2 52 0 3 1452 353 333 56 7 chr3 113753114 113753256 -45846527 + B1F SINE Alu 1 149 0 3 1452 2389 94 0 56 chr3 113753504 113753863 -45845920 + L1_Mus2 LINE L1 6169 6507 -59 3 1452 21 36 0 0 chr3 113753994 113754022 -45845761 + AT_rich Low_complexity Low_complexity 1 28 0 3 1452 1768 75 27 16 chr3 113754022 113754280 -45845503 - L1Md_F2 LINE L1 -14 6568 6308 3 1452 263 346 7 43 chr3 113754309 113754448 -45845335 - MIR SINE MIR -85 177 44 3 1452 1131 84 0 0 chr3 113754685 113754828 -45844955 + B1_Mus2 SINE Alu 3 145 -2 3 1452 207 0 0 0 chr3 113754828 113754851 -45844932 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 3 1452 351 0 0 0 chr3 113754944 113754983 -45844800 + (TG)n Simple_repeat Simple_repeat 2 40 0 3 1452 494 43 14 0 chr3 113755243 113755312 -45844471 + (TA)n Simple_repeat Simple_repeat 2 71 0 3 1452 29 47 0 0 chr3 113758430 113758473 -45841310 + AT_rich Low_complexity Low_complexity 1 43 0 3 1452 1052 255 93 42 chr3 113759172 113759528 -45840255 + ORR1D1 LTR MaLR 1 374 0 3 1452 432 0 0 0 chr3 113760123 113760171 -45839612 + (TTCC)n Simple_repeat Simple_repeat 1 48 0 3 1452 1187 97 6 0 chr3 113760171 113760347 -45839436 + (TTTC)n Simple_repeat Simple_repeat 3 179 0 3 1452 183 80 0 0 chr3 113760368 113760393 -45839390 + (TTTC)n Simple_repeat Simple_repeat 4 28 0 3 1452 201 258 16 0 chr3 113760396 113760458 -45839325 + CT-rich Low_complexity Low_complexity 2 64 0 3 1452 252 254 47 16 chr3 113760469 113760533 -45839250 - PB1D7 SINE Alu -18 102 37 3 1452 1116 56 0 0 chr3 113761344 113761487 -45838296 + B1_Mus2 SINE Alu 2 144 -3 3 1452 725 42 21 0 chr3 113761487 113761583 -45838200 + (GAAAA)n Simple_repeat Simple_repeat 2 99 0 3 1452 300 256 24 0 chr3 113762195 113762277 -45837506 - B2_Mm1t SINE B2 -108 85 2 3 1452 351 0 0 0 chr3 113762348 113762387 -45837396 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 3 1452 1469 86 4 35 chr3 113763224 113763454 -45836329 + L1Md_F2 LINE L1 6360 6582 0 3 1452 498 318 34 6 chr3 113763569 113763746 -45836037 + B3A SINE B2 1 182 -16 3 1452 529 299 34 7 chr3 113763777 113763925 -45835858 + B3A SINE B2 14 165 -33 3 1452 216 0 0 0 chr3 113764604 113764628 -45835155 + (A)n Simple_repeat Simple_repeat 1 24 0 3 1452 547 250 8 8 chr3 113764825 113764946 -45834837 + RSINE1 SINE B4 14 134 -31 3 1452 525 306 9 85 chr3 113765307 113765518 -45834265 - B3A SINE B2 0 198 4 3 1452 185 309 0 18 chr3 113765580 113765636 -45834147 - MIR SINE MIR -25 237 183 4 1452 369 0 0 0 chr3 113766112 113766153 -45833630 + (TG)n Simple_repeat Simple_repeat 1 41 0 4 1452 321 26 0 0 chr3 113766153 113766191 -45833592 + (GA)n Simple_repeat Simple_repeat 1 38 0 4 1452 311 200 0 122 chr3 113766258 113766332 -45833451 - B4 SINE B4 -10 282 218 4 1452 5445 188 62 31 chr3 113766337 113767554 -45832229 - Lx4B LINE L1 0 7058 5805 4 1452 273 383 45 38 chr3 113767643 113767776 -45832007 - ID_B1 SINE B4 -88 136 3 4 1452 21 0 0 0 chr3 113768076 113768097 -45831686 + AT_rich Low_complexity Low_complexity 1 21 0 4 1452 271 105 35 0 chr3 113770236 113770293 -45829490 + (TA)n Simple_repeat Simple_repeat 2 60 0 4 1453 21 36 0 0 chr3 113771379 113771407 -45828376 + AT_rich Low_complexity Low_complexity 1 28 0 4 1453 233 217 0 21 chr3 113772529 113772576 -45827207 + (CTA)n Simple_repeat Simple_repeat 2 47 0 4 1453 403 342 38 32 chr3 113772586 113772743 -45827040 - B3A SINE B2 -32 166 9 4 1453 263 217 17 0 chr3 113773473 113773533 -45826250 + L1MC LINE L1 3387 3447 -2699 4 1453 387 328 88 0 chr3 113773577 113773861 -45825922 + L1MC LINE L1 3577 3885 -2261 4 1453 318 301 32 11 chr3 113773869 113773963 -45825820 + B1_Mur3 SINE Alu 1 96 -53 4 1453 333 279 42 49 chr3 113773963 113774106 -45825677 - L1MCa LINE L1 -2062 4259 4118 4 1453 445 332 54 15 chr3 113774150 113774483 -45825300 - L1MCa LINE L1 -3295 3026 2681 4 1453 462 252 9 0 chr3 113774619 113774726 -45825057 + Lx9 LINE L1 7132 7239 -405 4 1453 506 316 120 14 chr3 113774852 113775426 -45824357 - L1MCa LINE L1 -5323 1185 551 4 1453 522 278 46 51 chr3 113776941 113777157 -45822626 + Lx8 LINE L1 7252 7466 -7 4 1453 737 199 0 72 chr3 113777485 113777637 -45822146 + URR1B DNA MER1_type 2 142 -83 4 1453 726 321 22 36 chr3 113778582 113778857 -45820926 - B4A SINE B4 -10 282 12 4 1453 3225 97 4 2 chr3 113778932 113779397 -45820386 - L1_Mus3 LINE L1 -2 6636 6171 4 1453 936 327 77 34 chr3 113780158 113780681 -45819102 - Lx8 LINE L1 -5 7468 6924 4 1453 585 295 118 24 chr3 113780685 113781018 -45818765 + MTD LTR MaLR 10 393 -14 4 1453 263 146 18 0 chr3 113782630 113782685 -45817098 + (CAA)n Simple_repeat Simple_repeat 1 56 0 4 1453 246 233 0 14 chr3 113782989 113783063 -45816720 + T-rich Low_complexity Low_complexity 3 75 0 4 1453 704 310 9 5 chr3 113783376 113783587 -45816196 + B3 SINE B2 1 212 -4 4 1453 551 335 142 57 chr3 113784357 113784898 -45814885 - MTE-int LTR MaLR -41 1539 953 4 1453 290 351 60 26 chr3 113785071 113785188 -45814595 - MLT-int LTR MaLR -905 830 710 4 1453 327 320 39 7 chr3 113785526 113785680 -45814103 - L1M2 LINE L1 -493 5798 5640 4 1453 555 286 137 26 chr3 113785809 113786317 -45813466 - L1M2 LINE L1 -835 5465 4882 4 1453 423 0 0 0 chr3 113787014 113787061 -45812722 + (TTCTCC)n Simple_repeat Simple_repeat 4 50 0 4 1453 1118 58 6 0 chr3 113787192 113787348 -45812435 + L1Md_F3 LINE L1 6413 6569 -15 4 1453 27 0 0 0 chr3 113787348 113787375 -45812408 + AT_rich Low_complexity Low_complexity 1 27 0 4 1453 185 296 128 39 chr3 113787492 113787594 -45812189 + L2a LINE L2 3312 3422 -4 4 1453 29 60 0 0 chr3 113787662 113787712 -45812071 + AT_rich Low_complexity Low_complexity 1 50 0 4 1453 1797 269 32 44 chr3 113787798 113788272 -45811511 - Lx5 LINE L1 -11 7039 6572 4 1453 23 33 0 0 chr3 113789017 113789047 -45810736 + AT_rich Low_complexity Low_complexity 1 30 0 4 1453 387 0 0 0 chr3 113789066 113789109 -45810674 + (TTTA)n Simple_repeat Simple_repeat 3 45 0 4 1453 443 107 13 0 chr3 113789158 113789233 -45810550 + (GA)n Simple_repeat Simple_repeat 1 76 0 4 1453 389 54 18 0 chr3 113790931 113790987 -45808796 + (CA)n Simple_repeat Simple_repeat 2 58 0 4 1453 317 252 34 13 chr3 113791344 113791448 -45808335 + RSINE1 SINE B4 14 122 -170 4 1453 429 20 0 0 chr3 113791448 113791498 -45808285 + (TAAA)n Simple_repeat Simple_repeat 3 52 0 4 1453 317 247 93 0 chr3 113791501 113791598 -45808185 + L1M2 LINE L1 5469 5574 -717 4 1453 662 370 60 3 chr3 113791671 113791988 -45807795 - MTEa LTR MaLR -17 362 28 4 1453 554 203 436 5 chr3 113793693 113793890 -45805893 - Lx9 LINE L1 -7 7637 7356 4 1453 25 31 0 0 chr3 113794627 113794659 -45805124 + AT_rich Low_complexity Low_complexity 1 32 0 4 1453 258 32 0 0 chr3 113795344 113795375 -45804408 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 4 1453 411 293 101 13 chr3 113795505 113795664 -45804119 - Lx6 LINE L1 -5 7455 7283 4 1453 255 61 0 0 chr3 113795666 113795699 -45804084 + (TC)n Simple_repeat Simple_repeat 1 33 0 4 1453 198 0 0 0 chr3 113795700 113795722 -45804061 + (TA)n Simple_repeat Simple_repeat 2 23 0 4 1453 25 0 0 0 chr3 113795734 113795759 -45804024 + AT_rich Low_complexity Low_complexity 1 25 0 4 1453 333 0 0 0 chr3 113795759 113795796 -45803987 + (TTTA)n Simple_repeat Simple_repeat 3 39 0 4 1453 538 157 0 0 chr3 113795797 113795899 -45803884 - Lx3A LINE L1 -13 6968 6867 4 1453 321 255 139 21 chr3 113795900 113796044 -45803739 - Lx6 LINE L1 -1310 6150 5990 4 1453 308 113 45 36 chr3 113796150 113796260 -45803523 + (TTTG)n Simple_repeat Simple_repeat 2 112 0 4 1453 201 174 0 42 chr3 113796282 113796354 -45803429 + (TA)n Simple_repeat Simple_repeat 1 69 0 4 1453 1115 82 7 0 chr3 113796511 113796657 -45803126 + B1_Mus1 SINE Alu 1 147 -1 4 1453 623 48 12 0 chr3 113803202 113803285 -45796498 + (TG)n Simple_repeat Simple_repeat 1 84 0 4 1453 420 323 72 40 chr3 113803293 113803570 -45796213 - B4A SINE B4 -4 288 3 4 1453 533 122 0 9 chr3 113803619 113803735 -45796048 + (TCTA)n Simple_repeat Simple_repeat 4 118 0 4 1453 2802 88 3 0 chr3 113804647 113805033 -45794750 - L1_Mus1 LINE L1 0 6567 6181 4 1453 205 88 0 29 chr3 113806510 113806545 -45793238 + (TTTTTA)n Simple_repeat Simple_repeat 2 35 0 4 1453 582 244 32 107 chr3 113806553 113806649 -45793134 - RMER17C LTR ERVK -34 376 277 4 1453 1032 81 29 6 chr3 113806649 113806824 -45792959 + (GA)n Simple_repeat Simple_repeat 2 180 0 4 1453 582 244 32 107 chr3 113806824 113807130 -45792653 - RMER17C LTR ERVK -134 276 4 4 1453 855 317 40 6 chr3 113807189 113807541 -45792242 - Lx8 LINE L1 -296 7177 6814 4 1453 21 57 0 0 chr3 113808739 113808774 -45791009 + AT_rich Low_complexity Low_complexity 1 35 0 4 1453 2500 192 44 20 chr3 113808887 113809473 -45790310 + L1_Mur3 LINE L1 4141 4740 -1140 4 1453 185 83 0 27 chr3 113810256 113810293 -45789490 + (TTTTTG)n Simple_repeat Simple_repeat 6 41 0 4 1453 748 57 37 19 chr3 113810445 113810553 -45789230 - B1_Mm SINE Alu 0 147 38 4 1453 285 29 0 0 chr3 113811655 113811689 -45788094 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 4 1453 32 0 0 0 chr3 113812052 113812084 -45787699 + AT_rich Low_complexity Low_complexity 1 32 0 4 1453 287 289 10 135 chr3 113812138 113812330 -45787453 - Lx8 LINE L1 -70 7403 7236 4 1453 929 229 114 23 chr3 113812355 113812618 -45787165 - Lx5 LINE L1 -2 7048 6762 4 1453 434 247 280 0 chr3 113812600 113812782 -45787001 - Lx8 LINE L1 -207 7266 7034 4 1453 229 276 60 79 chr3 113812839 113813006 -45786777 - L1ME2 LINE L1 -183 5981 5819 4 1453 2627 93 0 16 chr3 113813006 113813387 -45786396 - Lx LINE L1 -6 6648 6274 4 1453 229 276 60 79 chr3 113813387 113813435 -45786348 - L1ME2 LINE L1 -346 5818 5770 4 1453 703 297 72 0 chr3 113813776 113813971 -45785812 + B3 SINE B2 6 214 -2 4 1453 1254 130 5 0 chr3 113814521 113814713 -45785070 + B2_Mm1t SINE B2 1 193 0 4 1453 21 0 0 0 chr3 113815231 113815252 -45784531 + AT_rich Low_complexity Low_complexity 1 21 0 4 1453 33 73 0 0 chr3 113816935 113817003 -45782780 + AT_rich Low_complexity Low_complexity 1 68 0 4 1453 711 81 0 0 chr3 113817948 113818047 -45781736 + (TG)n Simple_repeat Simple_repeat 2 100 0 4 1453 429 145 0 0 chr3 113819001 113819077 -45780706 + (TG)n Simple_repeat Simple_repeat 2 77 0 4 1453 962 112 11 11 chr3 113819101 113819281 -45780502 + (GA)n Simple_repeat Simple_repeat 1 180 0 4 1453 21 89 0 0 chr3 113819971 113820027 -45779756 + AT_rich Low_complexity Low_complexity 1 56 0 4 1453 811 208 50 5 chr3 113820028 113820226 -45779557 - B3 SINE B2 -6 210 4 4 1453 265 157 127 14 chr3 113820623 113820694 -45779089 - L1MB7 LINE L1 -72 6112 6034 4 1453 333 0 0 0 chr3 113820892 113820929 -45778854 + (T)n Simple_repeat Simple_repeat 1 37 0 4 1453 477 305 15 0 chr3 113820960 113821091 -45778692 - B1_Mur1 SINE Alu -16 133 1 4 1453 32 75 0 0 chr3 113821662 113821729 -45778054 + AT_rich Low_complexity Low_complexity 1 67 0 4 1453 197 235 130 14 chr3 113822109 113822178 -45777605 + MIRb SINE MIR 190 266 -2 4 1453 1123 76 0 0 chr3 113823448 113823593 -45776190 + B1_Mus2 SINE Alu 2 146 -1 4 1453 279 0 0 0 chr3 113823603 113823634 -45776149 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 4 1453 317 43 21 0 chr3 113823636 113823683 -45776100 + (CAAA)n Simple_repeat Simple_repeat 1 48 0 4 1453 1463 239 67 26 chr3 113824752 113825143 -45774640 - MTD LTR MaLR -8 411 5 4 1453 3918 147 40 6 chr3 113825748 113826404 -45773379 - RLTR33 LTR ERVK 0 678 1 4 1453 333 0 0 0 chr3 113827675 113827712 -45772071 + (TG)n Simple_repeat Simple_repeat 1 37 0 4 1453 252 183 33 129 chr3 113830228 113830350 -45769433 - L1M5 LINE L1 -729 5450 5341 4 1453 295 23 22 22 chr3 113830607 113830652 -45769131 + (CAAAAA)n Simple_repeat Simple_repeat 2 46 0 4 1453 45 0 0 0 chr3 113831548 113831593 -45768190 + AT_rich Low_complexity Low_complexity 1 45 0 4 1453 234 148 18 53 chr3 113831690 113831747 -45768036 + A-rich Low_complexity Low_complexity 1 55 0 4 1453 40 67 0 0 chr3 113831945 113832020 -45767763 + AT_rich Low_complexity Low_complexity 1 75 0 4 1453 1251 268 67 22 chr3 113832390 113832791 -45766992 - MTD LTR MaLR 0 419 1 4 1453 821 49 0 31 chr3 113832961 113833088 -45766695 + (TATG)n Simple_repeat Simple_repeat 1 123 0 4 1453 504 293 7 0 chr3 113833266 113833406 -45766377 - B1_Mur1 SINE Alu -2 147 7 4 1453 294 359 12 37 chr3 113833406 113833428 -45766355 - ID_B1 SINE B4 -2 222 65 4 1453 215 381 57 9 chr3 113833443 113833472 -45766311 - ID_B1 SINE B4 -111 113 3 5 1453 228 364 52 0 chr3 113833472 113833549 -45766234 - ID4 SINE ID 0 83 3 5 1453 349 327 0 9 chr3 113834100 113834205 -45765578 + CT-rich Low_complexity Low_complexity 3 106 0 5 1453 21 0 0 0 chr3 113836462 113836483 -45763300 + AT_rich Low_complexity Low_complexity 1 21 0 5 1453 525 329 0 30 chr3 113836528 113836697 -45763086 - RSINE1 SINE B4 0 165 2 5 1453 272 321 159 78 chr3 113836733 113836990 -45762793 - MLT1C LTR MaLR -3 464 187 5 1453 3780 99 3 27 chr3 113837025 113837609 -45762174 - L1_Mus4 LINE L1 -2 6634 6065 5 1453 30 27 0 0 chr3 113837734 113837771 -45762012 + AT_rich Low_complexity Low_complexity 1 37 0 5 1453 373 302 37 19 chr3 113837918 113838026 -45761757 - PB1D10 SINE Alu -6 111 2 5 1453 30 77 0 0 chr3 113841007 113841072 -45758711 + AT_rich Low_complexity Low_complexity 1 65 0 5 1453 772 136 64 6 chr3 113842493 113842649 -45757134 - Lx2 LINE L1 -2 6995 6831 5 1453 189 0 0 0 chr3 113842811 113842832 -45756951 + (GTTTG)n Simple_repeat Simple_repeat 4 24 0 5 1453 380 91 15 0 chr3 113842832 113842898 -45756885 + (TTCTG)n Simple_repeat Simple_repeat 4 70 0 5 1453 180 77 0 0 chr3 113844389 113844415 -45755368 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 5 1453 24 32 0 0 chr3 113845218 113845249 -45754534 + AT_rich Low_complexity Low_complexity 1 31 0 5 1453 544 274 32 0 chr3 113846481 113846605 -45753178 - B1_Mur1 SINE Alu -21 128 1 5 1453 346 341 45 37 chr3 113846488 113846622 -45753161 - ID_B1 SINE B4 -25 199 65 5 1453 1216 73 28 0 chr3 113847201 113847379 -45752404 - L1Md_F2 LINE L1 0 6582 6400 5 1453 256 264 22 22 chr3 113848123 113848212 -45751571 + CT-rich Low_complexity Low_complexity 4 92 0 5 1453 207 0 0 0 chr3 113848214 113848237 -45751546 + (TC)n Simple_repeat Simple_repeat 1 23 0 5 1453 220 295 64 64 chr3 113848254 113848348 -45751435 - PB1D9 SINE Alu -5 115 22 5 1453 297 151 0 0 chr3 113850756 113850809 -45748974 + (TTA)n Simple_repeat Simple_repeat 2 54 0 5 1453 1723 160 101 0 chr3 113850924 113850946 -45748837 - RMER6C LTR ERVK -318 372 348 5 1453 432 0 0 0 chr3 113850946 113850994 -45748789 + (TC)n Simple_repeat Simple_repeat 1 48 0 5 1453 1723 160 101 0 chr3 113850994 113851309 -45748474 - RMER6C LTR ERVK -343 347 2 5 1453 519 247 253 0 chr3 113851309 113851459 -45748324 - Lx6 LINE L1 -436 7024 6837 5 1453 284 240 31 10 chr3 113853130 113853227 -45746556 + (TA)n Simple_repeat Simple_repeat 2 100 0 5 1453 192 360 86 63 chr3 113854674 113854849 -45744934 - L3b LINE CR1 -146 336 158 5 1453 392 89 38 12 chr3 113856185 113856265 -45743518 + (TA)n Simple_repeat Simple_repeat 2 83 0 5 1453 771 133 0 32 chr3 113856282 113856437 -45743346 - Lx LINE L1 -3 6978 6829 5 1453 24 0 0 0 chr3 113856947 113856971 -45742812 + AT_rich Low_complexity Low_complexity 1 24 0 5 1453 477 0 0 0 chr3 113857794 113857847 -45741936 + (CA)n Simple_repeat Simple_repeat 2 54 0 5 1453 35 24 0 0 chr3 113857906 113857948 -45741835 + AT_rich Low_complexity Low_complexity 1 42 0 5 1453 1038 173 37 5 chr3 113858218 113858433 -45741350 - Lx LINE L1 -1 6653 6432 5 1453 279 317 91 8 chr3 113862128 113862249 -45737534 - MLT1A0 LTR MaLR -230 135 5 5 1453 4801 125 58 37 chr3 113864190 113865324 -45734459 - L1_Mus1 LINE L1 -6 6561 5399 5 1453 1038 212 100 61 chr3 113865683 113866044 -45733739 - MTE2a LTR MaLR -2 377 3 5 1453 24 0 0 0 chr3 113867165 113867189 -45732594 + AT_rich Low_complexity Low_complexity 1 24 0 5 1453 233 299 0 36 chr3 113868663 113868774 -45731009 + (CATATA)n Simple_repeat Simple_repeat 6 112 0 5 1453 982 300 43 37 chr3 113868869 113869243 -45730540 - MTD LTR MaLR -26 393 18 5 1453 26 0 0 0 chr3 113869511 113869537 -45730246 + AT_rich Low_complexity Low_complexity 1 26 0 5 1453 229 206 0 45 chr3 113869786 113869852 -45729931 + T-rich Low_complexity Low_complexity 3 65 0 5 1453 1116 88 0 0 chr3 113870607 113870778 -45729005 + (TG)n Simple_repeat Simple_repeat 1 171 0 5 1453 357 24 0 0 chr3 113870778 113870819 -45728964 + (GA)n Simple_repeat Simple_repeat 1 42 0 5 1453 35 63 0 0 chr3 113871155 113871218 -45728565 + AT_rich Low_complexity Low_complexity 1 63 0 5 1453 1827 142 24 15 chr3 113871227 113871555 -45728228 + Lx3B LINE L1 6640 6970 -3 5 1453 27 0 0 0 chr3 113871993 113872020 -45727763 + AT_rich Low_complexity Low_complexity 1 27 0 5 1453 31 76 0 0 chr3 113872428 113872494 -45727289 + AT_rich Low_complexity Low_complexity 1 66 0 5 1453 481 62 71 0 chr3 113872747 113872859 -45726924 + (TA)n Simple_repeat Simple_repeat 1 120 0 5 1453 24 0 0 0 chr3 113872916 113872940 -45726843 + AT_rich Low_complexity Low_complexity 1 24 0 5 1453 25 0 0 0 chr3 113873536 113873561 -45726222 + AT_rich Low_complexity Low_complexity 1 25 0 5 1453 997 168 33 5 chr3 113874038 113874248 -45725535 + Lx LINE L1 6436 6651 -3 5 1453 33 90 0 0 chr3 113874251 113874340 -45725443 + AT_rich Low_complexity Low_complexity 1 89 0 5 1453 3302 70 22 19 chr3 113874687 113875150 -45724633 + L1Md_F2 LINE L1 6116 6579 -3 5 1453 34 42 0 0 chr3 113875659 113875707 -45724076 + AT_rich Low_complexity Low_complexity 1 48 0 5 1453 385 292 84 71 chr3 113876047 113876202 -45723581 - B4A SINE B4 -129 163 7 5 1453 326 22 43 0 chr3 113876374 113876420 -45723363 + (TTTA)n Simple_repeat Simple_repeat 2 49 0 5 1453 14855 164 63 17 chr3 113876553 113879275 -45720508 - Lx3_Mus LINE L1 -8 7001 4135 5 1453 432 0 0 0 chr3 113879275 113879323 -45720460 + (TC)n Simple_repeat Simple_repeat 1 48 0 5 1453 14855 221 122 16 chr3 113879323 113881962 -45717821 - Lx3_Mus LINE L1 -1749 4134 1203 5 1453 2763 139 12 0 chr3 113881955 113882401 -45717382 - L1_Mur1 LINE L1 -5840 1142 348 5 1453 23 33 0 0 chr3 113882735 113882765 -45717018 + AT_rich Low_complexity Low_complexity 1 30 0 5 1453 343 260 118 65 chr3 113882997 113883293 -45716490 - Lx7 LINE L1 0 7696 7269 5 1453 186 362 21 11 chr3 113885826 113885921 -45713862 - MIRc SINE MIR -107 161 66 5 1453 29 0 0 0 chr3 113888920 113888949 -45710834 + AT_rich Low_complexity Low_complexity 1 29 0 5 1453 735 236 120 37 chr3 113889711 113889953 -45709830 - Lx6 LINE L1 -26 7434 7173 5 1453 1604 170 48 81 chr3 113891051 113891409 -45708374 - ORR1B1 LTR MaLR -8 386 41 5 1453 524 320 41 0 chr3 113891507 113891654 -45708129 + RSINE1 SINE B4 3 155 -10 5 1453 24 53 0 0 chr3 113891658 113891696 -45708087 + AT_rich Low_complexity Low_complexity 1 38 0 5 1453 947 275 144 32 chr3 113892056 113893111 -45706672 - L1MA5 LINE L1 -363 5937 4742 5 1453 240 316 91 77 chr3 113893833 113894042 -45705741 + B3 SINE B2 3 214 -2 5 1453 251 277 35 24 chr3 113894901 113894986 -45704797 - MLT1A1 LTR MaLR -8 400 315 5 1453 1163 128 17 6 chr3 113895790 113895971 -45703812 - B2_Mm2 SINE B2 -10 185 3 5 1453 518 297 0 0 chr3 113896413 113896551 -45703232 - B1_Mur2 SINE Alu -11 138 1 5 1453 47 61 0 0 chr3 113897257 113897339 -45702444 + AT_rich Low_complexity Low_complexity 1 82 0 5 1453 242 268 28 0 chr3 113897423 113897494 -45702289 + (CATATA)n Simple_repeat Simple_repeat 2 74 0 5 1453 2148 197 48 15 chr3 113898467 113898946 -45700837 - RLTR28 LTR ERVL -15 509 15 5 1453 361 182 0 0 chr3 113899481 113899558 -45700225 + (CATATA)n Simple_repeat Simple_repeat 2 78 0 5 1453 6018 60 1 3 chr3 113899595 113900361 -45699422 - L1Md_F2 LINE L1 -2 6580 5816 5 1453 211 342 16 98 chr3 113901341 113901464 -45698319 - PB1D10 SINE Alu -4 113 1 5 1453 216 0 0 0 chr3 113901524 113901548 -45698235 + (TA)n Simple_repeat Simple_repeat 2 25 0 5 181 357 188 0 0 chr3 113901553 113901633 -45698150 + (CA)n Simple_repeat Simple_repeat 1 80 0 5 1454 594 0 0 0 chr3 113902542 113902608 -45697175 + (CAAAA)n Simple_repeat Simple_repeat 2 67 0 5 1454 565 173 16 8 chr3 113903186 113903314 -45696469 - Lx4A LINE L1 -2 7056 6928 5 1454 758 289 59 17 chr3 113903403 113903642 -45696141 - Lx6 LINE L1 -26 7434 7186 5 1454 265 333 29 19 chr3 113903985 113904089 -45695694 - ID_B1 SINE B4 -5 219 115 5 1454 195 184 0 0 chr3 113904284 113904322 -45695461 + (TTG)n Simple_repeat Simple_repeat 2 39 0 5 1454 470 172 0 0 chr3 113904322 113904409 -45695374 - Lx2B LINE L1 -810 6190 6104 5 1454 515 262 101 29 chr3 113904450 113904620 -45695163 + Lx6 LINE L1 7257 7417 -43 5 1454 188 177 0 31 chr3 113904625 113904689 -45695094 + A-rich Low_complexity Low_complexity 4 65 0 5 1454 3434 51 9 5 chr3 113905903 113906380 -45693403 - L1Md_T LINE L1 0 6582 6147 5 1454 233 338 7 20 chr3 113906729 113906877 -45692906 + (TA)n Simple_repeat Simple_repeat 2 147 0 5 1454 345 350 71 52 chr3 113907385 113907695 -45692088 - ORR1E LTR MaLR -2 357 42 5 1454 231 36 0 0 chr3 113909931 113909959 -45689824 + (CA)n Simple_repeat Simple_repeat 2 29 0 5 1454 348 279 23 11 chr3 113910169 113910256 -45689527 - MLT1C LTR MaLR -82 385 298 5 1454 569 259 90 15 chr3 113911888 113912088 -45687695 + B3 SINE B2 2 216 0 5 1454 939 86 0 0 chr3 113913565 113913704 -45686079 + (TG)n Simple_repeat Simple_repeat 2 140 0 5 1454 418 233 0 104 chr3 113913721 113913836 -45685947 - B3 SINE B2 -112 104 2 5 1454 549 294 91 51 chr3 113914260 113914536 -45685247 + B4A SINE B4 1 287 -5 5 1454 23 0 0 0 chr3 113916810 113916833 -45682950 + AT_rich Low_complexity Low_complexity 1 23 0 5 1454 7792 106 11 1 chr3 113916837 113918425 -45681358 - L1_Mus4 LINE L1 -1 6635 5025 5 1454 337 185 0 15 chr3 113918425 113918491 -45681292 + L1_Mm LINE L1 4844 4908 -975 5 1454 23 0 0 0 chr3 113918680 113918703 -45681080 + AT_rich Low_complexity Low_complexity 1 23 0 5 1454 216 0 0 0 chr3 113919016 113919040 -45680743 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 6 1454 1235 136 23 55 chr3 113919056 113919313 -45680470 + Lx3_Mus LINE L1 6748 6996 -13 6 1454 270 0 0 0 chr3 113919313 113919343 -45680440 + (TTAA)n Simple_repeat Simple_repeat 1 30 0 6 1454 297 0 0 0 chr3 113924115 113924148 -45675635 + (CA)n Simple_repeat Simple_repeat 2 34 0 6 1454 295 263 88 29 chr3 113924239 113924376 -45675407 - Arthur1 DNA Tip100 -384 3563 3419 6 1454 828 107 0 24 chr3 113926111 113926236 -45673547 + B1_Mus1 SINE Alu 2 123 -25 6 1454 1071 64 0 0 chr3 113926239 113926379 -45673404 + (GAAA)n Simple_repeat Simple_repeat 1 140 0 6 1454 28 0 0 0 chr3 113926508 113926536 -45673247 + AT_rich Low_complexity Low_complexity 1 28 0 6 1454 545 306 49 0 chr3 113926538 113926682 -45673101 + B3A SINE B2 4 154 -44 6 1454 492 18 0 0 chr3 113926683 113926740 -45673043 + (CA)n Simple_repeat Simple_repeat 2 58 0 6 1454 189 0 0 0 chr3 113926741 113926762 -45673021 + (CAGAGA)n Simple_repeat Simple_repeat 2 22 0 6 1454 21 0 0 0 chr3 113926819 113926840 -45672943 + AT_rich Low_complexity Low_complexity 1 21 0 6 1454 2628 190 11 17 chr3 113928451 113928981 -45670802 - RLTR11A2 LTR ERVK 0 527 1 6 1454 886 321 55 85 chr3 113929774 113930302 -45669481 - MT2A LTR ERVL -19 514 3 6 1454 232 211 0 17 chr3 113930307 113930365 -45669418 + (TAA)n Simple_repeat Simple_repeat 3 59 0 6 1454 236 283 160 101 chr3 113931374 113931543 -45668240 + MER102b DNA MER1_type 2 180 -161 6 1454 262 301 58 22 chr3 113932295 113932434 -45667349 - RLTR23 LTR ERV1 0 430 287 6 1454 3079 99 24 4 chr3 113932698 113933156 -45666627 - L1_Mur1 LINE L1 -736 5150 4684 6 1454 7885 128 32 29 chr3 113933147 113934614 -45665169 + Lx3B LINE L1 5500 6970 -3 6 1454 573 15 0 0 chr3 113934632 113934698 -45665085 + (GAA)n Simple_repeat Simple_repeat 1 66 0 6 1454 300 378 33 50 chr3 113935352 113935533 -45664250 - L1MDa LINE L1 -5790 843 666 6 1454 30166 95 21 13 chr3 113935864 113941115 -45658668 + L1Md_A LINE L1 293 5586 -297 6 1454 8581 19 7 0 chr3 113941115 113942102 -45657681 + L1Md_A LINE L1 5587 6580 -2 6 1454 7820 58 4 4 chr3 113942147 113943142 -45656641 + L1Md_F2 LINE L1 5588 6582 0 6 1454 777 182 91 0 chr3 113943244 113943398 -45656385 - URR1A DNA MER1_type 0 226 59 6 1454 2711 168 10 0 chr3 113943409 113943908 -45655875 + Lx2 LINE L1 5780 6282 -715 6 1454 626 143 16 32 chr3 113943928 113944051 -45655732 + Lx2 LINE L1 6876 6996 -1 6 1454 33 0 0 0 chr3 113944054 113944087 -45655696 + AT_rich Low_complexity Low_complexity 1 33 0 6 1454 673 203 8 8 chr3 113944101 113944235 -45655548 + B1_Mus2 SINE Alu 13 146 -1 6 1454 216 345 13 53 chr3 113944103 113944253 -45655530 + B4A SINE B4 100 243 -49 6 1454 21 0 0 0 chr3 113944537 113944558 -45655225 + AT_rich Low_complexity Low_complexity 1 21 0 6 1454 254 327 65 28 chr3 113944669 113944776 -45655007 - PB1D10 SINE Alu -1 116 6 6 1454 2835 153 64 19 chr3 113945085 113945485 -45654298 - L1_Mur1 LINE L1 -752 5134 4735 6 1454 207 0 0 0 chr3 113945485 113945508 -45654275 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 6 1454 2835 153 64 19 chr3 113945508 113945672 -45654111 - L1_Mur1 LINE L1 -1152 4734 4545 6 1454 1647 26 0 0 chr3 113945684 113945874 -45653909 - B2_Mm1t SINE B2 -3 190 1 6 1454 236 304 75 12 chr3 113945985 113946065 -45653718 + MLT1E2 LTR MaLR 374 458 -169 6 1454 3630 111 38 14 chr3 113946077 113946628 -45653155 + LTRIS2 LTR ERV1 1 564 0 6 1454 3553 207 63 38 chr3 113947450 113948380 -45651403 - RMER17B LTR ERVK 0 958 5 6 1454 383 56 56 0 chr3 113949583 113949654 -45650129 + (CATA)n Simple_repeat Simple_repeat 2 76 0 6 1454 585 0 0 0 chr3 113949677 113949742 -45650041 + (GAAA)n Simple_repeat Simple_repeat 4 68 0 6 1454 1149 123 0 0 chr3 113949742 113949920 -45649863 + (GA)n Simple_repeat Simple_repeat 2 180 0 6 1454 249 108 0 0 chr3 113950400 113950437 -45649346 + (TA)n Simple_repeat Simple_repeat 1 37 0 6 1454 914 338 67 27 chr3 113950601 113951082 -45648701 + Lx8 LINE L1 6949 7448 -25 6 1454 1920 282 32 52 chr3 113952134 113952786 -45646997 + Lx7 LINE L1 6461 7099 -597 6 1454 486 0 0 0 chr3 113952839 113952893 -45646890 + (GA)n Simple_repeat Simple_repeat 1 54 0 6 1454 416 284 85 36 chr3 113953337 113953560 -45646223 + Lx7 LINE L1 7075 7308 -388 6 1454 430 306 160 47 chr3 113953797 113954290 -45645493 + Lx9 LINE L1 7081 7629 -15 6 1454 26 0 0 0 chr3 113954461 113954487 -45645296 + AT_rich Low_complexity Low_complexity 1 26 0 6 1454 4729 113 7 4 chr3 113954513 113955212 -45644571 - Lx LINE L1 -7 6647 5947 6 1454 199 215 72 58 chr3 113955324 113955393 -45644390 + MIRm SINE MIR 155 224 -52 6 1454 1076 189 12 112 chr3 113955395 113955645 -45644138 + URR1B DNA MER1_type 1 225 0 6 1454 6951 87 10 15 chr3 113955888 113957400 -45642383 - L1VL4 LINE L1 -1645 1914 413 6 1454 1075 102 0 6 chr3 113957401 113957559 -45642224 + Lx2 LINE L1 5671 5827 -1170 6 1454 360 263 0 78 chr3 113957660 113957763 -45642020 - B3A SINE B2 0 198 104 6 1454 319 358 32 0 chr3 113958157 113958252 -45641531 - B1F1 SINE Alu -49 100 3 6 1454 263 286 78 78 chr3 113959782 113959949 -45639834 + RMER2 LTR ERV1 334 500 -67 6 1454 1384 285 20 6 chr3 113960029 113960385 -45639398 - MTE2b LTR MaLR -1 378 18 6 1454 912 98 0 0 chr3 113960778 113960911 -45638872 + (TA)n Simple_repeat Simple_repeat 2 134 0 6 1454 916 223 264 8 chr3 113962011 113962412 -45637371 + RLTR12B LTR ERVK 3 506 -22 6 1454 23 33 0 0 chr3 113962973 113963003 -45636780 + AT_rich Low_complexity Low_complexity 1 30 0 6 1454 4849 131 70 0 chr3 113963978 113964755 -45635028 + L1Md_F2 LINE L1 392 1222 -5394 6 1454 31032 81 8 8 chr3 113964769 113969133 -45630650 + L1Md_F2 LINE L1 1219 5585 -298 6 1454 7832 59 3 0 chr3 113969134 113970115 -45629668 + L1Md_F2 LINE L1 5587 6570 -12 6 1454 4293 104 8 5 chr3 113970117 113970763 -45629020 + L1Md_F2 LINE L1 5933 6580 -2 6 1454 1011 207 56 19 chr3 113971024 113971407 -45628376 + Lx9 LINE L1 7208 7633 -11 6 1454 246 32 0 0 chr3 113971407 113971438 -45628345 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 6 1454 580 179 20 20 chr3 113971438 113971450 -45628333 + Lx9 LINE L1 7634 7644 0 6 1454 4777 60 0 0 chr3 113972321 113972917 -45626866 + L1Md_F2 LINE L1 5975 6570 -12 6 1454 8961 4 0 0 chr3 113973285 113974280 -45625503 + L1Md_A LINE L1 5587 6581 -1 6 1454 294 29 0 0 chr3 113974577 113974612 -45625171 + (CA)n Simple_repeat Simple_repeat 2 36 0 6 1454 395 235 11 5 chr3 113974849 113974952 -45624831 + L1MB3 LINE L1 5766 5866 -302 6 1454 1298 261 85 0 chr3 113974972 113975302 -45624481 + ORR1D1 LTR MaLR 17 374 0 6 1454 41108 6 0 0 chr3 113975393 113981969 -45617814 - L1Md_A LINE L1 -1 6581 7 6 1454 227 281 102 20 chr3 113982078 113982176 -45617607 - L1MB2 LINE L1 -64 6107 6002 6 1454 26 30 0 0 chr3 113982280 113982313 -45617470 + AT_rich Low_complexity Low_complexity 1 33 0 6 1454 233 163 20 0 chr3 113982529 113982578 -45617205 + CT-rich Low_complexity Low_complexity 2 51 0 6 1454 388 272 37 56 chr3 113983027 113983241 -45616542 + Lx9 LINE L1 7427 7636 -8 6 1454 2896 136 0 93 chr3 113983451 113983571 -45616212 + L1_Mur2 LINE L1 4740 4822 -1055 6 1454 980 68 7 46 chr3 113983571 113983724 -45616059 - B1_Mm SINE Alu 0 147 1 6 1454 2896 136 0 93 chr3 113983724 113984163 -45615620 + L1_Mur2 LINE L1 4823 5247 -630 6 1454 21 0 0 0 chr3 113984237 113984258 -45615525 + AT_rich Low_complexity Low_complexity 1 21 0 6 1454 34 55 0 0 chr3 113984271 113984326 -45615457 + AT_rich Low_complexity Low_complexity 1 55 0 6 1454 397 387 146 14 chr3 113985271 113985546 -45614237 + LTR16A1 LTR ERVL 146 456 0 6 1454 348 24 0 0 chr3 113985640 113985681 -45614102 + (CA)n Simple_repeat Simple_repeat 2 42 0 6 1454 390 115 0 0 chr3 113985681 113985741 -45614042 + (TA)n Simple_repeat Simple_repeat 1 61 0 6 1454 297 0 0 0 chr3 113985844 113985877 -45613906 + (TA)n Simple_repeat Simple_repeat 2 34 0 6 1454 513 294 68 18 chr3 113986040 113986203 -45613580 + ORR1E LTR MaLR 24 194 -165 6 1454 330 87 0 0 chr3 113986372 113986418 -45613365 + (CA)n Simple_repeat Simple_repeat 1 46 0 6 1454 504 0 0 0 chr3 113986418 113986473 -45613310 + (GA)n Simple_repeat Simple_repeat 2 57 0 6 1454 599 38 0 0 chr3 113986506 113986585 -45613198 - L1Md_T LINE L1 0 6582 6504 6 1454 295 376 128 49 chr3 113986791 113987199 -45612584 - LTR16A LTR ERVL 0 451 12 6 1454 484 261 122 0 chr3 113987366 113987481 -45612302 + B1F SINE Alu 8 136 -13 6 1454 483 18 0 0 chr3 113987538 113987594 -45612189 + (TAGA)n Simple_repeat Simple_repeat 1 56 0 6 1454 22 35 0 0 chr3 113987628 113987657 -45612126 + AT_rich Low_complexity Low_complexity 1 29 0 6 1454 2817 234 16 52 chr3 113987714 113988564 -45611219 + RMER3D-int LTR ERVK 1919 2738 -104 6 1454 3132 154 27 23 chr3 113988564 113989122 -45610661 + RLTR31_Mm LTR ERVK 2 561 0 6 1454 926 181 27 6 chr3 113989130 113989313 -45610470 - B2_Mm2 SINE B2 -5 190 4 6 1454 573 15 0 0 chr3 113989585 113989651 -45610132 + (TA)n Simple_repeat Simple_repeat 2 67 0 6 1454 2315 88 12 3 chr3 113989788 113990128 -45609655 - L1Md_F2 LINE L1 -2 6580 6238 6 1454 652 279 29 29 chr3 113990589 113990799 -45608984 - B3 SINE B2 -4 212 3 6 1454 43 0 0 0 chr3 113991817 113991860 -45607923 + AT_rich Low_complexity Low_complexity 1 43 0 6 1454 1154 325 44 35 chr3 113992479 113993052 -45606731 + Lx8 LINE L1 6258 6835 -638 6 1454 232 244 13 13 chr3 113993224 113993303 -45606480 + Lx9 LINE L1 7565 7643 -1 6 1454 363 44 0 0 chr3 113995096 113995141 -45604642 + (TC)n Simple_repeat Simple_repeat 2 46 0 6 1454 876 160 14 0 chr3 113995141 113995285 -45604498 - B1_Mus1 SINE Alu -1 147 2 6 1454 896 254 24 5 chr3 113996020 113996226 -45603557 + B3 SINE B2 3 212 -4 6 1454 397 381 26 56 chr3 113996617 113996923 -45602860 - MER21B LTR ERV1 -145 718 422 6 1454 414 0 0 0 chr3 113997400 113997446 -45602337 + (TA)n Simple_repeat Simple_repeat 1 46 0 7 1454 958 204 39 211 chr3 113998067 113998575 -45601208 + RLTR23 LTR ERV1 8 428 -2 7 1454 23 68 0 0 chr3 113998789 113998833 -45600950 + AT_rich Low_complexity Low_complexity 1 44 0 7 1454 271 105 35 0 chr3 114000851 114000908 -45598875 + (TG)n Simple_repeat Simple_repeat 2 60 0 1 1454 446 338 8 8 chr3 114000921 114001055 -45598728 - RSINE1 SINE B4 -28 137 4 2 1454 5995 211 53 21 chr3 114001830 114003522 -45596261 + Lx5 LINE L1 5293 7050 0 3 1454 1371 136 4 0 chr3 114003596 114003831 -45595952 - Lx2 LINE L1 -1 6996 6761 4 1454 1303 93 6 0 chr3 114003837 114004019 -45595764 + Lx2 LINE L1 6573 6755 -242 4 1454 21 0 0 0 chr3 114004316 114004337 -45595446 + AT_rich Low_complexity Low_complexity 1 21 0 5 1454 22 35 0 0 chr3 114004389 114004418 -45595365 + AT_rich Low_complexity Low_complexity 1 29 0 6 1454 534 71 14 0 chr3 114004679 114004749 -45595034 + L1Md_F3 LINE L1 5516 5586 -297 7 1454 7895 48 7 2 chr3 114004749 114005742 -45594041 + L1Md_F3 LINE L1 5587 6584 0 7 1454 1424 58 0 0 chr3 114005742 114005932 -45593851 + L1Md_F3 LINE L1 6381 6570 -14 8 1454 186 71 0 0 chr3 114005952 114005980 -45593803 + (CAAAAA)n Simple_repeat Simple_repeat 2 29 0 9 1454 474 272 80 6 chr3 114006999 114007162 -45592621 + Lx5 LINE L1 6875 7049 -1 1 1454 2719 93 15 12 chr3 114007899 114008303 -45591480 + Lx3_Mus LINE L1 6605 7009 0 1 1454 27 0 0 0 chr3 114008303 114008330 -45591453 + AT_rich Low_complexity Low_complexity 1 27 0 1 1454 21 0 0 0 chr3 114009151 114009172 -45590611 + AT_rich Low_complexity Low_complexity 1 21 0 1 1454 283 143 0 0 chr3 114009173 114009215 -45590568 + Lx5 LINE L1 6487 6528 -522 1 1454 531 323 83 9 chr3 114009227 114009455 -45590328 - Lx8 LINE L1 -181 7292 7048 1 1454 29882 80 33 2 chr3 114011037 114015905 -45583878 - L1Md_F LINE L1 -272 5611 591 1 1454 294 95 0 0 chr3 114016252 114016294 -45583489 + (TTTA)n Simple_repeat Simple_repeat 1 42 0 1 1454 1033 98 14 0 chr3 114016294 114016437 -45583346 - B1_Mus1 SINE Alu -3 145 1 1 1454 22 0 0 0 chr3 114017308 114017330 -45582453 + AT_rich Low_complexity Low_complexity 1 22 0 1 1454 201 226 0 0 chr3 114018588 114018641 -45581142 + CT-rich Low_complexity Low_complexity 1 53 0 2 1454 417 20 0 0 chr3 114018691 114018741 -45581042 + (CA)n Simple_repeat Simple_repeat 1 50 0 2 1454 209 153 0 53 chr3 114018772 114018848 -45580935 + (TA)n Simple_repeat Simple_repeat 2 73 0 2 1454 28 29 0 0 chr3 114018884 114018919 -45580864 + AT_rich Low_complexity Low_complexity 1 35 0 2 1454 460 267 70 37 chr3 114019210 114019576 -45580207 - L1M4 LINE L1 -594 5585 5208 2 1454 603 0 0 0 chr3 114020008 114020075 -45579708 + (TC)n Simple_repeat Simple_repeat 2 68 0 2 1454 29 0 0 0 chr3 114020237 114020266 -45579517 + AT_rich Low_complexity Low_complexity 1 29 0 2 1454 260 27 0 26 chr3 114020427 114020465 -45579318 + (CA)n Simple_repeat Simple_repeat 2 38 0 2 1454 192 182 0 0 chr3 114020542 114020586 -45579197 + (CA)n Simple_repeat Simple_repeat 2 45 0 2 1454 627 271 34 19 chr3 114021048 114021255 -45578528 - B3 SINE B2 -6 210 1 2 1454 1176 61 0 0 chr3 114021397 114021544 -45578239 - B1_Mm SINE Alu 0 147 1 3 1454 259 308 167 0 chr3 114021702 114021780 -45578003 + PB1D10 SINE Alu 1 91 -26 3 1454 282 301 121 26 chr3 114021711 114021827 -45577956 + ID_B1 SINE B4 91 217 -7 3 1454 226 314 157 0 chr3 114021880 114021982 -45577801 + L2a LINE L2 3309 3426 0 3 1454 613 321 61 5 chr3 114022198 114022395 -45577388 - B4 SINE B4 -2 290 83 3 1454 296 328 66 84 chr3 114023335 114023548 -45576235 - RMER15 LTR ERVL -34 541 333 3 1454 236 30 30 0 chr3 114024177 114024210 -45575573 + (TTA)n Simple_repeat Simple_repeat 1 34 0 3 1454 317 356 10 0 chr3 114024230 114024331 -45575452 + PB1D10 SINE Alu 10 111 -6 3 1454 216 0 0 0 chr3 114025433 114025457 -45574326 + (TG)n Simple_repeat Simple_repeat 1 24 0 3 1454 209 276 0 8 chr3 114025504 114025628 -45574155 + (TG)n Simple_repeat Simple_repeat 1 123 0 3 1454 471 35 0 0 chr3 114026218 114026275 -45573508 + (TG)n Simple_repeat Simple_repeat 1 57 0 3 1454 441 125 0 0 chr3 114026275 114026363 -45573420 + (GA)n Simple_repeat Simple_repeat 2 89 0 4 1454 3880 115 48 2 chr3 114026483 114027086 -45572697 - Lx2 LINE L1 0 6997 6367 4 1454 206 278 147 23 chr3 114027095 114027224 -45572559 + MIRb SINE MIR 116 260 -8 4 1454 2996 149 20 7 chr3 114029274 114029862 -45569921 + Lx2B LINE L1 5355 5951 -1049 4 1454 513 0 0 0 chr3 114031017 114031074 -45568709 + (CA)n Simple_repeat Simple_repeat 2 58 0 4 1454 579 279 54 18 chr3 114031573 114031796 -45567987 + Tigger5 DNA MER2_type 2139 2369 -37 4 1454 24 53 0 0 chr3 114031853 114031891 -45567892 + AT_rich Low_complexity Low_complexity 1 38 0 4 1454 281 306 50 75 chr3 114031987 114032107 -45567676 - B1F1 SINE Alu 0 117 1 4 1455 388 340 95 51 chr3 114032688 114033079 -45566704 - MLT1A1 LTR MaLR 0 408 1 4 1455 312 388 83 23 chr3 114034183 114034315 -45565468 + B4A SINE B4 144 283 -9 4 1455 1851 246 126 78 chr3 114034491 114035262 -45564521 + RLTR40 LTR ERVK 2 809 -8 5 1455 1183 275 79 11 chr3 114036089 114036468 -45563315 - Lx6 LINE L1 -994 6466 6062 5 1455 2539 181 64 97 chr3 114036482 114037032 -45562751 - Lx6 LINE L1 -434 5446 4867 5 1455 204 40 0 0 chr3 114037032 114037057 -45562726 + (TTA)n Simple_repeat Simple_repeat 2 26 0 5 1455 2539 181 64 97 chr3 114037057 114037228 -45562555 - Lx6 LINE L1 -1014 4866 4749 5 1455 281 47 23 0 chr3 114037230 114037273 -45562510 + (TTG)n Simple_repeat Simple_repeat 2 45 0 5 1455 2730 242 142 1 chr3 114037286 114038023 -45561760 + Lx6 LINE L1 6462 7302 -158 5 1455 348 370 43 82 chr3 114038178 114038458 -45561325 + B4 SINE B4 24 292 0 5 1455 222 278 0 27 chr3 114038481 114038555 -45561228 + (CATATA)n Simple_repeat Simple_repeat 4 75 0 5 1455 225 306 69 37 chr3 114040076 114040293 -45559490 + L1M5 LINE L1 3601 3824 -2322 5 1455 329 326 0 0 chr3 114040331 114040426 -45559357 + Lx5 LINE L1 6618 6712 -338 5 1455 976 169 10 25 chr3 114040573 114040773 -45559010 + L1_Mus3 LINE L1 6441 6637 -1 5 1455 423 256 101 80 chr3 114040998 114041202 -45558581 - L1_Mur3 LINE L1 -1400 4447 4245 6 1455 387 41 0 0 chr3 114041799 114041848 -45557935 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 6 1455 21 0 0 0 chr3 114042604 114042625 -45557158 + AT_rich Low_complexity Low_complexity 1 21 0 6 1455 300 182 66 0 chr3 114042826 114042963 -45556820 + (TA)n Simple_repeat Simple_repeat 1 146 0 6 1455 395 256 22 0 chr3 114043136 114043226 -45556557 + B4A SINE B4 185 276 -16 6 1455 378 0 0 0 chr3 114043264 114043306 -45556477 + (TG)n Simple_repeat Simple_repeat 1 42 0 6 1455 479 343 61 90 chr3 114043587 114043994 -45555789 - MTE2a LTR MaLR 0 379 3 6 1455 1122 246 27 0 chr3 114044243 114044499 -45555284 + Lx7 LINE L1 6468 6730 -730 6 1455 270 0 0 0 chr3 114044527 114044557 -45555226 + (GAAA)n Simple_repeat Simple_repeat 3 32 0 6 1455 927 179 0 0 chr3 114044557 114044736 -45555047 + GA-rich Low_complexity Low_complexity 2 180 0 6 1455 317 248 0 12 chr3 114044737 114044820 -45554963 + Lx7 LINE L1 6778 6855 -605 6 1455 489 34 0 0 chr3 114044828 114044887 -45554896 + (CA)n Simple_repeat Simple_repeat 1 59 0 7 1455 1235 208 13 57 chr3 114044887 114045203 -45554580 + Lx7 LINE L1 7395 7696 0 6 1455 222 37 0 0 chr3 114045327 114045354 -45554429 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 7 1455 4705 212 43 14 chr3 114045388 114046403 -45553380 - Lx5 LINE L1 -51 6999 5955 7 1455 365 321 51 66 chr3 114046566 114046823 -45552960 - L1M5 LINE L1 -412 5767 5515 7 1455 236 210 113 0 chr3 114046897 114046959 -45552824 - L1M5 LINE L1 -853 5387 5319 7 1455 540 0 0 0 chr3 114047345 114047405 -45552378 + (CA)n Simple_repeat Simple_repeat 1 60 0 7 1455 21 57 0 0 chr3 114047498 114047533 -45552250 + AT_rich Low_complexity Low_complexity 1 35 0 7 1455 1718 207 45 8 chr3 114047853 114048233 -45551550 + Lx9 LINE L1 6884 7277 -367 7 1455 183 80 0 0 chr3 114048237 114048262 -45551521 + (TG)n Simple_repeat Simple_repeat 2 26 0 7 1455 353 256 40 63 chr3 114048289 114048464 -45551319 + Lx9 LINE L1 7467 7637 -7 7 1455 12364 106 22 56 chr3 114048732 114050686 -45549097 - L1_Mur1 LINE L1 -970 4916 3039 7 1455 1041 102 7 0 chr3 114050686 114050833 -45548950 - B1_Mus1 SINE Alu 0 148 1 7 1455 12364 106 22 56 chr3 114050833 114051055 -45548728 - L1_Mur1 LINE L1 -2848 3038 2813 7 1455 7395 104 22 1 chr3 114051059 114052411 -45547372 - L1_Mus3 LINE L1 -12 6626 5238 8 1455 405 39 0 0 chr3 114052411 114052462 -45547321 + (TATG)n Simple_repeat Simple_repeat 2 52 0 8 1455 7395 129 20 6 chr3 114052462 114053008 -45546775 - L1_Mus3 LINE L1 -646 5237 4689 8 1455 406 187 0 0 chr3 114052985 114053060 -45546723 - L1_Mur1 LINE L1 -3095 2791 2717 7 1455 1683 118 12 4 chr3 114053059 114053314 -45546469 - Lx3A LINE L1 -528 6453 6197 8 1455 1450 110 3 45 chr3 114053299 114053585 -45546198 - L1_Mur1 LINE L1 -4370 1516 1243 7 1455 609 90 119 8 chr3 114053594 114053728 -45546055 - RMER17B LTR ERVK -498 460 312 8 1455 6608 151 42 30 chr3 114053728 114054194 -45545589 - L1_Mur1 LINE L1 -5711 1273 786 7 1455 1087 75 7 7 chr3 114054194 114054341 -45545442 - B1_Mm SINE Alu 0 147 1 8 1455 6608 166 41 27 chr3 114054341 114055332 -45544451 - L1_Mur1 LINE L1 -6199 785 3 7 1455 184 281 17 50 chr3 114055362 114055422 -45544361 - MIRc SINE MIR -56 212 155 8 1455 468 81 0 0 chr3 114055947 114056021 -45543762 + (GA)n Simple_repeat Simple_repeat 2 75 0 8 1455 1856 19 0 0 chr3 114056191 114056404 -45543379 + L1Md_F2 LINE L1 6356 6568 -14 8 1455 349 320 30 10 chr3 114057110 114057211 -45542572 + PB1D7 SINE Alu 10 112 -8 8 1455 200 250 39 0 chr3 114057215 114057267 -45542516 + (CAAA)n Simple_repeat Simple_repeat 3 56 0 8 1455 267 374 0 0 chr3 114058586 114058669 -45541114 - ID_B1 SINE B4 -51 173 91 9 1455 2577 152 38 9 chr3 114059527 114059952 -45539831 - RMER19A LTR ERVK 0 737 301 9 1455 1769 175 6 0 chr3 114059952 114060267 -45539516 - L1_Mur2 LINE L1 -195 5682 5366 9 1455 1175 276 62 6 chr3 114060266 114060677 -45539106 + Lx2B LINE L1 6516 7041 -17 9 1455 899 63 0 0 chr3 114060686 114060797 -45538986 + L1Md_F2 LINE L1 5475 5585 -298 9 1455 7009 99 7 10 chr3 114060798 114061797 -45537986 + L1Md_F2 LINE L1 5587 6582 0 9 1455 542 244 95 17 chr3 114061799 114061978 -45537805 + MTD LTR MaLR 227 419 0 9 1455 1028 282 14 7 chr3 114062543 114062818 -45536965 + Lx6 LINE L1 7166 7442 -18 9 1455 312 68 17 0 chr3 114062827 114062886 -45536897 - L1_Mus3 LINE L1 -5 6633 6574 9 1455 32 26 0 0 chr3 114062897 114062936 -45536847 + AT_rich Low_complexity Low_complexity 1 39 0 9 1455 22 0 0 0 chr3 114063192 114063214 -45536569 + AT_rich Low_complexity Low_complexity 1 22 0 9 1455 189 196 0 0 chr3 114063400 114063446 -45536337 + (TA)n Simple_repeat Simple_repeat 1 46 0 1 1455 780 284 25 20 chr3 114063446 114063647 -45536136 - B3 SINE B2 -13 203 2 1 1455 498 324 52 16 chr3 114063697 114063984 -45535799 - MER34 LTR ERV1 -275 296 1 1 1455 328 297 70 76 chr3 114064324 114064481 -45535302 + RLTR24 LTR ERV1 6 161 -368 1 1455 195 42 0 0 chr3 114066477 114066501 -45533282 + (CA)n Simple_repeat Simple_repeat 1 24 0 1 1455 298 342 30 9 chr3 114067464 114067612 -45532171 - MER34A LTR ERV1 -7 580 418 1 1455 1133 313 24 34 chr3 114067655 114068050 -45531733 + MTE2a LTR MaLR 18 395 -24 1 1455 987 306 24 27 chr3 114068071 114068404 -45531379 - MER34A LTR ERV1 -230 341 10 1 1455 2338 193 41 137 chr3 114069373 114070017 -45529766 - RMER6C LTR ERVK -6 684 111 1 1455 3410 23 2 10 chr3 114070017 114070416 -45529367 - MTA_Mm LTR MaLR 0 396 1 1 1455 2338 193 41 137 chr3 114070416 114070528 -45529255 - RMER6C LTR ERVK -580 110 1 1 1455 900 339 8 39 chr3 114070539 114070901 -45528882 + Lx7 LINE L1 6277 6627 -1069 1 1455 6596 141 10 47 chr3 114070901 114072233 -45527550 + Lx3C LINE L1 5418 6698 -278 1 1455 252 0 0 0 chr3 114072697 114072725 -45527058 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 1 1455 455 300 21 58 chr3 114072859 114072995 -45526788 - MLT1B LTR MaLR -206 184 46 1 1455 784 98 114 0 chr3 114072995 114073127 -45526656 - L1Md_F2 LINE L1 -1 6581 6435 1 1455 455 300 21 58 chr3 114073127 114073181 -45526602 - MLT1B LTR MaLR -345 45 1 1 1455 293 179 44 15 chr3 114073271 114073339 -45526444 - MER5A1 DNA MER1_type -3 163 94 1 1455 24 32 0 0 chr3 114073518 114073549 -45526234 + AT_rich Low_complexity Low_complexity 1 31 0 1 1455 22 0 0 0 chr3 114073665 114073687 -45526096 + AT_rich Low_complexity Low_complexity 1 22 0 1 1455 25 31 0 0 chr3 114075117 114075149 -45524634 + AT_rich Low_complexity Low_complexity 1 32 0 1 1455 32 57 0 0 chr3 114077313 114077366 -45522417 + AT_rich Low_complexity Low_complexity 1 53 0 1 1455 1316 225 154 9 chr3 114077931 114078249 -45521534 + ORR1C1 LTR MaLR 1 364 -14 1 1455 3020 196 22 11 chr3 114078264 114079262 -45520521 + ORR1C1-int LTR MaLR 1 1509 0 1 1455 331 380 51 7 chr3 114079262 114079283 -45520500 - B3A SINE B2 -42 156 133 1 1455 1231 202 194 7 chr3 114079283 114079592 -45520191 + ORR1C1 LTR MaLR 1 367 0 1 1455 331 380 51 7 chr3 114079592 114079708 -45520075 - B3A SINE B2 -66 132 13 1 1455 23 33 0 0 chr3 114080107 114080137 -45519646 + AT_rich Low_complexity Low_complexity 1 30 0 1 1455 267 103 0 0 chr3 114080696 114080735 -45519048 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 1455 3497 162 3 28 chr3 114080786 114081428 -45518355 - Lx2B LINE L1 -4 6996 6371 1 1455 1034 310 54 14 chr3 114081553 114081923 -45517860 - Lx8 LINE L1 -151 7322 6938 1 1455 227 302 0 16 chr3 114083580 114083644 -45516139 - B4A SINE B4 -228 64 2 1 1455 3397 85 4 8 chr3 114084028 114084504 -45515279 + L1Md_F2 LINE L1 6109 6582 0 1 1455 22 56 0 0 chr3 114085000 114085036 -45514747 + AT_rich Low_complexity Low_complexity 1 36 0 1 1455 612 40 0 0 chr3 114085464 114085539 -45514244 + (TTTC)n Simple_repeat Simple_repeat 4 78 0 1 1455 369 0 0 0 chr3 114085936 114085977 -45513806 + (CA)n Simple_repeat Simple_repeat 1 41 0 1 1455 3852 96 28 2 chr3 114086115 114086690 -45513093 + MusHAL1 LINE L1 1218 1807 -905 1 1455 452 49 0 0 chr3 114086685 114086746 -45513037 + L1_Mus2 LINE L1 6074 6134 -432 1 1455 4066 67 0 40 chr3 114086859 114087324 -45512459 + L1_Mus1 LINE L1 6041 6504 -63 1 1455 3100 71 5 0 chr3 114087324 114087718 -45512065 + MTA_Mm LTR MaLR 1 396 0 1 1455 4066 67 0 40 chr3 114087718 114087801 -45511982 + L1_Mus1 LINE L1 6505 6567 0 1 1455 22 35 0 0 chr3 114088539 114088568 -45511215 + AT_rich Low_complexity Low_complexity 1 29 0 1 1455 2746 191 17 38 chr3 114089065 114089259 -45510524 - RMER4B LTR ERVK 0 585 388 1 1455 2993 70 19 14 chr3 114089259 114089678 -45510105 + BGLII LTR ERVK 1 421 0 1 1455 2746 191 17 38 chr3 114089678 114090061 -45509722 - RMER4B LTR ERVK -198 387 20 1 1455 220 317 134 0 chr3 114090086 114090168 -45509615 - L2 LINE L2 -467 2952 2860 1 1455 313 273 82 131 chr3 114090234 114090525 -45509258 - L1MC LINE L1 -3123 3023 2747 1 1455 1134 230 34 15 chr3 114090608 114090935 -45508848 - L1_Mur3 LINE L1 -2122 3758 3426 1 1455 686 292 41 37 chr3 114090941 114091186 -45508597 - Lx6 LINE L1 0 7460 7215 1 1455 828 221 183 75 chr3 114091183 114091676 -45508107 - L1_Mur3 LINE L1 -2459 3421 2876 1 1455 853 306 79 6 chr3 114091644 114091999 -45507784 + Lx7 LINE L1 6914 7294 -402 1 1455 245 323 0 0 chr3 114092324 114092417 -45507366 - L1MD LINE L1 -3734 2412 2320 1 1455 227 151 0 36 chr3 114092636 114092691 -45507092 + A-rich Low_complexity Low_complexity 3 55 0 1 1455 8109 44 13 3 chr3 114093629 114095231 -45504552 - L1Md_F3 LINE L1 -1 6583 4971 1 1455 536 123 0 11 chr3 114095227 114095324 -45504459 + L1_Mm LINE L1 4901 5022 -1121 1 1455 288 77 0 0 chr3 114095468 114095507 -45504276 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 1455 240 35 0 0 chr3 114095692 114095721 -45504062 + (TTA)n Simple_repeat Simple_repeat 2 30 0 1 1455 6872 178 31 2 chr3 114095731 114096986 -45502797 - Lx3C LINE L1 -29 6947 5656 1 1455 6263 167 42 87 chr3 114096984 114097152 -45502631 + Lx3C LINE L1 4453 4633 -1253 1 1455 198 0 0 0 chr3 114097152 114097174 -45502609 + (CAA)n Simple_repeat Simple_repeat 2 23 0 1 1455 6263 167 42 87 chr3 114097174 114098017 -45501766 + Lx3C LINE L1 4634 5462 -424 1 1455 4874 64 1 44 chr3 114098017 114098700 -45501083 + L1_Mus2 LINE L1 5910 6563 -3 1 1455 6529 184 45 38 chr3 114098700 114100240 -45499543 + Lx3C LINE L1 5463 6974 -2 1 1455 567 317 98 31 chr3 114100598 114100852 -45498931 - B4A SINE B4 -8 284 14 1 1455 570 67 0 0 chr3 114101034 114101109 -45498674 + (CA)n Simple_repeat Simple_repeat 1 75 0 1 1455 34 42 0 0 chr3 114102237 114102285 -45497498 + AT_rich Low_complexity Low_complexity 1 48 0 1 1455 350 238 60 6 chr3 114102411 114102569 -45497214 - Lx7 LINE L1 -1851 5845 5703 1 1455 1655 101 0 40 chr3 114102934 114103182 -45496601 - L1_Mus3 LINE L1 -191 6447 6210 1 1455 840 360 36 15 chr3 114103184 114103661 -45496122 + Lx8 LINE L1 6595 7081 -392 1 1455 200 128 51 0 chr3 114103883 114103922 -45495861 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 1455 468 183 0 0 chr3 114104066 114104159 -45495624 + (CA)n Simple_repeat Simple_repeat 2 94 0 1 1455 244 204 0 22 chr3 114104665 114104710 -45495073 - ORR1E LTR MaLR -315 44 1 1 1455 1045 90 0 0 chr3 114104750 114104883 -45494900 + B1_Mus2 SINE Alu 2 134 -13 1 1455 445 288 37 0 chr3 114105427 114105590 -45494193 + L1MA4 LINE L1 5709 5877 -423 1 1455 464 81 11 34 chr3 114105842 114105931 -45493852 + L1Md_F3 LINE L1 6491 6577 -7 1 1455 360 372 65 34 chr3 114106031 114106382 -45493401 + MLT-int LTR MaLR 144 505 -1230 1 1455 186 71 0 0 chr3 114106399 114106427 -45493356 + (T)n Simple_repeat Simple_repeat 1 28 0 1 1455 248 306 102 37 chr3 114106713 114106774 -45493009 + MTE2a LTR MaLR 223 291 -130 1 1455 473 148 55 18 chr3 114106774 114106884 -45492899 + L1_Mus2 LINE L1 6453 6566 0 1 1455 410 266 98 17 chr3 114106884 114106948 -45492835 + MTE2a LTR MaLR 247 360 -61 1 1455 462 36 0 0 chr3 114106948 114107004 -45492779 + (TTTA)n Simple_repeat Simple_repeat 2 57 0 1 1455 410 264 98 16 chr3 114107004 114107064 -45492719 + MTE2a LTR MaLR 320 379 0 1 1455 245 255 0 0 chr3 114107367 114107418 -45492365 + B3 SINE B2 6 56 -160 1 1455 23 33 0 0 chr3 114107668 114107698 -45492085 + AT_rich Low_complexity Low_complexity 1 30 0 1 1455 2184 232 4 19 chr3 114107699 114108170 -45491613 - Lx7 LINE L1 -871 6825 6362 1 1455 741 309 38 28 chr3 114108212 114108532 -45491251 - Lx7 LINE L1 -1449 6247 5925 1 1455 218 81 27 0 chr3 114109014 114109051 -45490732 + (TG)n Simple_repeat Simple_repeat 2 39 0 1 1455 234 263 0 50 chr3 114109703 114109783 -45490000 - Lx9 LINE L1 -281 7363 7288 1 1455 539 237 49 118 chr3 114109815 114110078 -45489705 + Lx9 LINE L1 7400 7644 0 1 1455 551 303 45 6 chr3 114110132 114110311 -45489472 + Lx7 LINE L1 6806 6991 -705 1 1455 27 0 0 0 chr3 114110722 114110749 -45489034 + AT_rich Low_complexity Low_complexity 1 27 0 1 1455 461 301 11 104 chr3 114111018 114111200 -45488583 + B4A SINE B4 10 174 -118 1 1455 1250 34 0 0 chr3 114111253 114111400 -45488383 + B1_Mus2 SINE Alu 1 147 0 1 1455 195 69 0 0 chr3 114111400 114111429 -45488354 + (CAAAA)n Simple_repeat Simple_repeat 5 33 0 1 1455 423 0 0 0 chr3 114111553 114111600 -45488183 + (TAA)n Simple_repeat Simple_repeat 2 48 0 1 1455 528 51 0 0 chr3 114111702 114111780 -45488003 - L1Md_F3 LINE L1 -2 6582 6505 1 1455 315 0 0 0 chr3 114112698 114112733 -45487050 + (TTA)n Simple_repeat Simple_repeat 3 37 0 1 1455 1823 130 9 40 chr3 114113148 114113477 -45486306 - Lx3B LINE L1 0 6973 6655 1 1455 398 297 42 42 chr3 114114249 114114393 -45485390 - MTD LTR MaLR 0 419 276 1 1455 1544 281 29 2 chr3 114114581 114114992 -45484791 + Lx6 LINE L1 6956 7377 -83 1 1455 1323 249 36 91 chr3 114115071 114115512 -45484271 + MTD LTR MaLR 3 419 0 1 1455 832 99 40 7 chr3 114115549 114115701 -45484082 + Lx LINE L1 6498 6654 0 1 1455 312 27 0 0 chr3 114115748 114115785 -45483998 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 1455 8014 21 1 0 chr3 114115978 114116910 -45482873 + L1Md_T LINE L1 4654 5586 -297 1 1455 8413 37 0 0 chr3 114116910 114117905 -45481878 + L1Md_T LINE L1 5587 6581 -1 1 1455 448 268 114 0 chr3 114117948 114118071 -45481712 + B1_Mur1 SINE Alu 3 139 -10 1 1455 414 69 0 0 chr3 114118561 114118619 -45481164 + (CA)n Simple_repeat Simple_repeat 2 59 0 1 1455 2365 172 49 39 chr3 114118867 114119014 -45480769 - RLTR19 LTR ERVK -4 495 334 1 1455 342 0 0 0 chr3 114119014 114119052 -45480731 + (CA)n Simple_repeat Simple_repeat 1 38 0 1 1455 2365 172 49 39 chr3 114119052 114119394 -45480389 - RLTR19 LTR ERVK -166 333 1 1 1455 256 308 124 4 chr3 114119602 114119712 -45480071 - B4 SINE B4 -170 122 4 1 1455 3757 77 6 2 chr3 114121260 114121765 -45478018 + L1_Mus1 LINE L1 6061 6567 0 1 1455 180 111 0 0 chr3 114121938 114121965 -45477818 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 1 1455 256 350 21 0 chr3 114122109 114122206 -45477577 - MLT1A0 LTR MaLR -66 299 201 1 1455 276 211 0 0 chr3 114123268 114123320 -45476463 + L1MC3 LINE L1 7145 7196 -589 1 1455 274 284 167 34 chr3 114123469 114123732 -45476051 + L1MC3 LINE L1 7370 7667 -118 1 1455 34 24 0 0 chr3 114123880 114123921 -45475862 + AT_rich Low_complexity Low_complexity 1 41 0 1 1455 308 350 97 47 chr3 114124079 114124400 -45475383 - HAL1 LINE L1 -584 1923 1587 2 1455 22 0 0 0 chr3 114124444 114124466 -45475317 + AT_rich Low_complexity Low_complexity 1 22 0 2 1455 270 0 0 0 chr3 114124730 114124760 -45475023 + (CAAAAA)n Simple_repeat Simple_repeat 3 32 0 2 1455 28 29 0 0 chr3 114124825 114124860 -45474923 + AT_rich Low_complexity Low_complexity 1 35 0 2 1455 610 279 38 0 chr3 114125870 114126028 -45473755 - MLT1A0 LTR MaLR -49 316 153 2 1455 1123 331 20 2 chr3 114126186 114126580 -45473203 - Lx6 LINE L1 -733 6727 6327 2 1455 2282 287 50 5 chr3 114126594 114127231 -45472552 + Lx6 LINE L1 6774 7439 -21 2 1455 23 54 0 0 chr3 114127443 114127480 -45472303 + AT_rich Low_complexity Low_complexity 1 37 0 2 1455 2557 49 52 0 chr3 114127598 114127926 -45471857 - IAPLTR4 LTR ERVK 0 345 1 2 1455 336 24 0 0 chr3 114129358 114129399 -45470384 + (TG)n Simple_repeat Simple_repeat 2 42 0 2 1455 399 148 22 11 chr3 114129414 114129503 -45470280 + CT-rich Low_complexity Low_complexity 1 90 0 2 1455 6552 124 24 38 chr3 114129503 114130574 -45469209 - Lx3A LINE L1 -3 6978 5921 2 1455 481 0 47 0 chr3 114130574 114130638 -45469145 + (TTTC)n Simple_repeat Simple_repeat 1 67 0 2 1455 6552 124 24 38 chr3 114130638 114130714 -45469069 - Lx3A LINE L1 -1061 5920 5847 2 1455 22 99 0 0 chr3 114130754 114130825 -45468958 + AT_rich Low_complexity Low_complexity 1 71 0 2 1455 952 82 89 0 chr3 114131180 114131315 -45468468 - B1_Mus1 SINE Alu 0 148 2 2 1455 258 337 74 97 chr3 114131717 114131934 -45467849 - B3A SINE B2 -1 215 4 2 1455 4987 112 18 3 chr3 114132582 114133325 -45466458 + Lx2A LINE L1 6251 7004 -4 2 1455 2396 108 119 12 chr3 114133440 114133869 -45465914 - IAPLTR2_Mm LTR ERVK 0 475 1 2 1455 3782 238 75 11 chr3 114135184 114135439 -45464344 - Lx7 LINE L1 0 7696 7420 2 1455 255 31 0 0 chr3 114135439 114135471 -45464312 + (CA)n Simple_repeat Simple_repeat 1 32 0 2 1455 477 0 0 0 chr3 114135471 114135523 -45464260 + (GA)n Simple_repeat Simple_repeat 2 54 0 2 1455 3782 238 75 11 chr3 114135523 114136262 -45463521 - Lx7 LINE L1 -277 7419 6638 2 1455 1210 276 64 54 chr3 114136264 114136765 -45463018 - Lx7 LINE L1 -1294 6402 5897 2 1455 321 218 0 0 chr3 114136902 114136980 -45462803 + (TTA)n Simple_repeat Simple_repeat 2 79 0 2 1455 585 322 0 77 chr3 114138267 114138489 -45461294 - AmnSINE1 SINE SINE -15 560 356 2 1455 431 181 36 65 chr3 114139347 114139471 -45460312 - L1_Mur2 LINE L1 -250 5627 5517 2 1455 5415 205 59 88 chr3 114139475 114141671 -45458112 + Lx5 LINE L1 4881 7038 -12 2 1455 200 200 0 0 chr3 114142923 114142958 -45456825 + CT-rich Low_complexity Low_complexity 2 36 0 2 1455 6314 190 27 18 chr3 114142968 114143078 -45456705 - Lx4B LINE L1 -4 7054 6952 2 1455 1708 163 0 104 chr3 114143078 114143442 -45456341 + ORR1A3 LTR MaLR 1 326 0 2 1455 6314 190 27 18 chr3 114143442 114144591 -45455192 - Lx4B LINE L1 -107 6951 5784 2 1455 256 105 88 0 chr3 114144612 114144669 -45455114 - Lx2 LINE L1 -1 6996 6935 2 1455 6202 160 31 14 chr3 114144669 114145299 -45454484 + L1_Mur2 LINE L1 4165 4794 -1083 2 1455 429 20 0 0 chr3 114145299 114145349 -45454434 + (CA)n Simple_repeat Simple_repeat 2 51 0 2 1455 6202 160 31 14 chr3 114145349 114145924 -45453859 + L1_Mur2 LINE L1 4795 5390 -487 2 1455 2621 185 75 29 chr3 114146722 114147380 -45452403 - RMER6C LTR ERVK -2 688 1 2 1455 730 347 62 3 chr3 114147599 114147908 -45451875 - Lx8 LINE L1 -359 7114 6788 2 1455 288 256 0 0 chr3 114148152 114148238 -45451545 + (TA)n Simple_repeat Simple_repeat 2 87 0 2 1455 25 0 0 0 chr3 114148975 114149000 -45450783 + AT_rich Low_complexity Low_complexity 1 25 0 2 1455 308 133 0 16 chr3 114149721 114149782 -45450001 + (GGA)n Simple_repeat Simple_repeat 1 60 0 2 1455 555 287 77 18 chr3 114150564 114150784 -45448999 - RMER20B LTR ERVK -215 412 180 2 1455 2722 307 67 25 chr3 114150971 114151094 -45448689 - MERVK26-int LTR ERVK -2 6917 6798 2 1455 197 0 71 0 chr3 114151094 114151122 -45448661 + (TAAAA)n Simple_repeat Simple_repeat 2 31 0 2 1455 2722 307 67 25 chr3 114151122 114151998 -45447785 - MERVK26-int LTR ERVK -122 6797 5878 2 1455 1826 311 14 4 chr3 114152393 114152906 -45446877 - MERVK26-int LTR ERVK -3455 3464 2947 2 1455 1594 216 146 82 chr3 114152954 114153504 -45446279 - RMER19B LTR ERVK -2 900 316 2 1455 973 266 58 39 chr3 114153528 114153891 -45445892 - Lx9 LINE L1 -195 7449 7080 2 1455 15124 61 7 0 chr3 114153937 114156592 -45443191 - L1Md_F2 LINE L1 -2 6580 3906 2 1455 6830 73 1 3 chr3 114156590 114157954 -45441829 - L1Md_F2 LINE L1 -4143 1740 380 2 1455 2241 249 54 37 chr3 114157944 114158595 -45441188 - Lx9 LINE L1 -548 7096 6435 2 1455 447 19 0 0 chr3 114158728 114158780 -45441003 + (CA)n Simple_repeat Simple_repeat 1 52 0 2 1455 278 330 132 0 chr3 114159347 114159453 -45440330 - Lx8 LINE L1 -144 7329 7210 2 1455 724 290 28 28 chr3 114159532 114159784 -45439999 - Lx6 LINE L1 -189 7271 7020 2 1455 2279 85 31 0 chr3 114159796 114160114 -45439669 - L1_Mus1 LINE L1 0 6567 6240 2 1455 2041 93 7 0 chr3 114160114 114160394 -45439389 + L1Md_F2 LINE L1 5938 6219 -363 2 1455 251 50 0 48 chr3 114160403 114160445 -45439338 + (TTTTTG)n Simple_repeat Simple_repeat 3 42 0 2 1455 2715 187 85 18 chr3 114160450 114161017 -45438766 - Lx6 LINE L1 -461 6999 6395 2 1455 1338 126 21 21 chr3 114161150 114161385 -45438398 + Lx LINE L1 6406 6640 -14 2 1455 21 0 0 0 chr3 114161813 114161834 -45437949 + AT_rich Low_complexity Low_complexity 1 21 0 2 1455 6196 108 13 21 chr3 114162532 114163470 -45436313 - Lx LINE L1 -2 6652 5723 2 181 357 311 189 28 chr3 114163583 114163831 -45435952 + B4A SINE B4 5 292 0 2 1456 271 218 25 13 chr3 114164832 114164911 -45434872 + (TA)n Simple_repeat Simple_repeat 1 80 0 2 1456 753 242 76 20 chr3 114165295 114165479 -45434304 - ORR1C2 LTR MaLR -2 382 187 2 1456 297 0 0 0 chr3 114165479 114165512 -45434271 + (TG)n Simple_repeat Simple_repeat 1 33 0 2 1456 753 242 76 20 chr3 114165512 114165525 -45434258 - ORR1C2 LTR MaLR -198 186 174 2 1456 572 191 12 19 chr3 114165525 114165552 -45434231 + polypurine Low_complexity Low_complexity 5 31 0 2 1456 1304 31 0 6 chr3 114165552 114165714 -45434069 + (GAA)n Simple_repeat Simple_repeat 3 163 0 2 1456 572 191 12 19 chr3 114165714 114165846 -45433937 + GA-rich Low_complexity Low_complexity 32 163 0 2 1456 220 67 0 0 chr3 114165848 114165878 -45433905 + (CAGAGA)n Simple_repeat Simple_repeat 4 33 0 2 1456 551 261 40 60 chr3 114165878 114166078 -45433705 - ORR1C2 LTR MaLR -188 196 1 2 1456 309 221 23 0 chr3 114168939 114169025 -45430758 - HAL1-2a_MD LINE L1 -504 2520 2433 2 1456 796 282 128 34 chr3 114169028 114169498 -45430285 - Lx9 LINE L1 -132 7512 6999 2 1456 474 33 0 0 chr3 114169498 114169558 -45430225 + (CA)n Simple_repeat Simple_repeat 2 61 0 2 1456 412 356 121 9 chr3 114170021 114170245 -45429538 - MER92B LTR ERV1 -363 273 25 2 1456 203 152 0 33 chr3 114170612 114170673 -45429110 + (CAGAGA)n Simple_repeat Simple_repeat 2 60 0 2 1456 344 228 114 0 chr3 114170690 114170769 -45429014 - RSINE1 SINE B4 -72 93 6 2 1456 272 161 49 0 chr3 114171263 114171344 -45428439 + GA-rich Low_complexity Low_complexity 2 86 0 2 1456 386 327 104 21 chr3 114171553 114171816 -45427967 - MER77 LTR ERVL -66 541 218 2 1456 258 368 50 37 chr3 114171884 114172045 -45427738 - MER77 LTR ERVL -441 166 4 2 1456 967 92 0 0 chr3 114172214 114172344 -45427439 + B1_Mus1 SINE Alu 1 130 -18 2 1456 751 251 16 48 chr3 114172835 114173023 -45426760 - B3A SINE B2 -34 182 1 2 1456 296 319 0 0 chr3 114173522 114173613 -45426170 + Lx7 LINE L1 7206 7296 -400 2 1456 219 191 0 0 chr3 114173622 114173685 -45426098 + CT-rich Low_complexity Low_complexity 2 64 0 2 1456 738 228 19 12 chr3 114174856 114175016 -45424767 + RMER13B LTR ERVK 2 162 -746 2 1456 6332 59 28 18 chr3 114175016 114175862 -45423921 - RLTR13A LTR ERVK 0 855 1 2 1456 49020 19 8 4 chr3 114175870 114177665 -45422118 - ETnERV3-int LTR ERVK -10 5798 4010 2 1456 213 65 0 0 chr3 114177665 114177696 -45422087 + (TTAA)n Simple_repeat Simple_repeat 3 33 0 2 1456 49020 19 8 4 chr3 114177696 114181672 -45418111 - ETnERV3-int LTR ERVK -1799 4009 4 2 1456 6332 59 28 18 chr3 114181674 114182520 -45417263 - RLTR13A LTR ERVK 0 855 1 2 1456 248 286 0 14 chr3 114182520 114182591 -45417192 + RLTR26 LTR ERVK 202 271 -371 2 1456 1705 220 3 18 chr3 114182583 114182921 -45416862 + RMER13B LTR ERVK 181 513 -395 2 1456 554 306 108 48 chr3 114183130 114183586 -45416197 - MER63C DNA AcHobo -447 483 1 2 1456 1938 168 117 47 chr3 114184521 114185009 -45414774 - RMER6C LTR ERVK -11 679 158 2 1456 1375 129 28 36 chr3 114185017 114185266 -45414517 - Lx LINE L1 -60 6594 6348 2 1456 611 174 110 29 chr3 114185266 114185402 -45414381 - RMER6C LTR ERVK -543 147 1 2 1456 456 298 120 0 chr3 114185737 114185928 -45413855 - MER82 DNA MER2_type -438 215 2 2 1456 202 209 0 0 chr3 114185993 114186036 -45413747 + A-rich Low_complexity Low_complexity 6 48 0 2 1456 1414 27 5 9 chr3 114187630 114187853 -45411930 + (TTC)n Simple_repeat Simple_repeat 1 221 0 2 1456 315 0 0 0 chr3 114187881 114187916 -45411867 + (CA)n Simple_repeat Simple_repeat 2 36 0 2 1456 233 289 0 0 chr3 114188016 114188092 -45411691 + (TA)n Simple_repeat Simple_repeat 2 77 0 2 1456 21 36 0 0 chr3 114188232 114188260 -45411523 + AT_rich Low_complexity Low_complexity 1 28 0 2 1456 5067 154 35 11 chr3 114188439 114189334 -45410449 - Lx2 LINE L1 -2 6995 6080 2 1456 180 0 0 0 chr3 114189341 114189361 -45410422 + (CAA)n Simple_repeat Simple_repeat 2 21 0 2 1456 1503 195 7 7 chr3 114189361 114189645 -45410138 + L1_Mm LINE L1 5316 5599 -284 2 1456 1260 169 132 73 chr3 114189653 114190024 -45409759 - RLTR9C LTR ERVK 0 393 1 2 1456 289 345 0 0 chr3 114190024 114190108 -45409675 - B1_Mur1 SINE Alu -20 129 46 2 1456 247 261 168 60 chr3 114190250 114190417 -45409366 + Zaphod2 DNA Tip100 830 1014 -2510 2 1456 330 98 0 0 chr3 114190544 114190595 -45409188 + (TA)n Simple_repeat Simple_repeat 2 52 0 2 1456 41 16 0 45 chr3 114190741 114190808 -45408975 + AT_rich Low_complexity Low_complexity 1 64 0 2 1456 1557 176 10 3 chr3 114190990 114191280 -45408503 + Lx4A LINE L1 6764 7055 -3 2 1456 430 293 12 25 chr3 114191481 114191642 -45408141 - Tigger5 DNA MER2_type -62 2344 2186 2 1456 537 325 40 20 chr3 114191643 114191844 -45407939 - Tigger5 DNA MER2_type -2098 308 104 2 1456 413 50 0 16 chr3 114191977 114192038 -45407745 + (TG)n Simple_repeat Simple_repeat 1 60 0 2 1456 276 30 0 0 chr3 114192566 114192599 -45407184 + (TAA)n Simple_repeat Simple_repeat 2 34 0 2 1456 487 276 45 59 chr3 114192769 114193066 -45406717 - L1M2 LINE L1 -636 5655 5361 2 1456 3638 244 90 4 chr3 114193302 114194312 -45405471 + Lx7 LINE L1 6612 7675 -21 2 1456 495 0 0 0 chr3 114194453 114194508 -45405275 + (TG)n Simple_repeat Simple_repeat 2 56 0 2 1456 212 297 31 0 chr3 114194906 114194970 -45404813 + MIR SINE MIR 82 147 -115 2 1456 459 0 0 0 chr3 114195234 114195285 -45404498 + (CA)n Simple_repeat Simple_repeat 2 52 0 2 1456 234 0 0 0 chr3 114195285 114195310 -45404473 + (TA)n Simple_repeat Simple_repeat 2 27 0 3 1456 36974 29 2 7 chr3 114196684 114201892 -45397891 + L1Md_T LINE L1 413 5585 -298 3 1456 8295 38 0 0 chr3 114201893 114202886 -45396897 + L1Md_T LINE L1 5587 6579 -3 3 1456 23 0 0 0 chr3 114202886 114202909 -45396874 + AT_rich Low_complexity Low_complexity 1 23 0 3 1456 336 337 40 40 chr3 114202957 114203225 -45396558 + ERVL-B4-int LTR ERVL 2280 2542 -2943 3 1456 256 319 88 0 chr3 114203368 114203459 -45396324 - 5S rRNA rRNA -21 100 2 3 1456 397 326 66 27 chr3 114205241 114205626 -45394157 + MLT1-int LTR MaLR 4 524 -847 3 1456 284 70 23 0 chr3 114206109 114206152 -45393631 + (TTTC)n Simple_repeat Simple_repeat 4 47 0 3 1456 1137 128 0 0 chr3 114206152 114206332 -45393451 + (TTC)n Simple_repeat Simple_repeat 1 180 0 3 1456 844 134 6 6 chr3 114206332 114206490 -45393293 + (TCC)n Simple_repeat Simple_repeat 3 160 0 3 1456 2622 163 32 45 chr3 114207017 114207551 -45392232 - RLTR11A2 LTR ERVK 0 527 1 3 1456 24 67 0 0 chr3 114208141 114208186 -45391597 + AT_rich Low_complexity Low_complexity 1 45 0 3 1456 246 258 0 0 chr3 114208821 114208883 -45390900 - Lx8 LINE L1 -135 7338 7277 3 1456 24 77 0 0 chr3 114210145 114210197 -45389586 + AT_rich Low_complexity Low_complexity 1 52 0 3 1456 29 28 0 0 chr3 114210521 114210557 -45389226 + AT_rich Low_complexity Low_complexity 1 36 0 3 1456 186 191 0 0 chr3 114210557 114210599 -45389184 + (TATATG)n Simple_repeat Simple_repeat 4 45 0 3 1456 213 388 106 43 chr3 114211425 114211681 -45388102 + B4A SINE B4 20 291 -1 3 1456 180 111 0 0 chr3 114211724 114211751 -45388032 + (CA)n Simple_repeat Simple_repeat 1 27 0 3 1456 205 368 65 22 chr3 114212079 114212218 -45387565 + MIR SINE MIR 46 190 -72 3 1456 280 278 43 57 chr3 114212365 114212401 -45387382 - CYRA11_Mm Unknown Y-chromosome -302 315 178 3 1456 623 173 0 0 chr3 114212401 114212505 -45387278 + URR1B DNA MER1_type 116 219 -6 3 1456 513 231 80 80 chr3 114213276 114213612 -45386171 + RLTR9A LTR ERVK 1 368 0 3 1456 232 308 26 80 chr3 114214539 114214652 -45385131 + MLT1F2 LTR MaLR 50 156 -404 3 1456 25 0 0 0 chr3 114215125 114215150 -45384633 + AT_rich Low_complexity Low_complexity 1 25 0 3 1456 21 57 0 0 chr3 114215438 114215473 -45384310 + AT_rich Low_complexity Low_complexity 1 35 0 3 1456 29 28 0 0 chr3 114215797 114215833 -45383950 + AT_rich Low_complexity Low_complexity 1 36 0 3 1456 500 136 12 0 chr3 114216047 114216113 -45383670 - ORR1B1 LTR MaLR -8 386 320 3 1456 5732 224 64 17 chr3 114216113 114217409 -45382374 + ORR1B1-int LTR MaLR 1 1359 -150 3 1456 7227 134 9 20 chr3 114217409 114218575 -45381208 + Lx2 LINE L1 5834 6987 -10 3 1456 606 28 0 0 chr3 114218577 114218649 -45381134 + (GA)n Simple_repeat Simple_repeat 2 73 0 3 1456 5732 224 64 17 chr3 114218649 114218777 -45381006 + ORR1B1-int LTR MaLR 1360 1495 -14 3 1456 2066 183 27 13 chr3 114218776 114219152 -45380631 + ORR1B1 LTR MaLR 5 385 -9 3 1456 1190 225 20 20 chr3 114219653 114219907 -45379876 + Lx2B LINE L1 6607 6860 -140 3 1456 1297 144 38 13 chr3 114219933 114220172 -45379611 - RMER6C LTR ERVK -372 318 74 3 1456 594 28 0 0 chr3 114220551 114220623 -45379160 + (TC)n Simple_repeat Simple_repeat 1 72 0 3 1456 1507 54 0 0 chr3 114221918 114222103 -45377680 + B2_Mm1a SINE B2 2 186 -7 3 1456 270 0 0 0 chr3 114222104 114222134 -45377649 + (CA)n Simple_repeat Simple_repeat 1 30 0 3 1456 400 320 64 19 chr3 114222237 114222393 -45377390 - L2 LINE L2 -469 2950 2788 3 1456 598 158 0 0 chr3 114223674 114223775 -45376008 + RLTR19-int LTR ERVK 3146 3246 -2891 3 1456 409 289 99 27 chr3 114223775 114223980 -45375803 + L1MC LINE L1 3083 3303 -2843 3 1456 466 118 15 0 chr3 114224046 114224114 -45375669 + B1_Mus2 SINE Alu 57 125 -22 3 1456 417 278 67 31 chr3 114224184 114224407 -45375376 + L1M2 LINE L1 3456 3686 -2457 3 1456 2890 290 83 10 chr3 114224376 114224826 -45374957 + Lx6 LINE L1 6025 6758 -702 3 1456 714 82 0 0 chr3 114224826 114224924 -45374859 + (GAAA)n Simple_repeat Simple_repeat 2 99 0 3 1456 2890 270 137 2 chr3 114224924 114225540 -45374243 + Lx6 LINE L1 6759 7460 0 3 1456 1013 264 23 23 chr3 114225679 114225732 -45374051 - RMER15 LTR ERVL -22 553 501 3 1456 3366 35 2 0 chr3 114225732 114226127 -45373656 + MTA_Mm LTR MaLR 1 396 0 3 1456 1013 264 23 23 chr3 114226127 114226329 -45373454 - RMER15 LTR ERVL -75 500 298 3 1456 786 172 68 0 chr3 114227188 114227351 -45372432 + L1_Mur3 LINE L1 2303 2476 -3404 3 1456 227 282 23 23 chr3 114227540 114227627 -45372156 + (CATATA)n Simple_repeat Simple_repeat 4 90 0 3 1456 25 31 0 0 chr3 114227715 114227747 -45372036 + AT_rich Low_complexity Low_complexity 1 32 0 3 1456 22 35 0 0 chr3 114227871 114227900 -45371883 + AT_rich Low_complexity Low_complexity 1 29 0 3 1456 4063 172 27 5 chr3 114228287 114229140 -45370643 + Lx4B LINE L1 5530 6419 -639 3 1456 631 233 246 62 chr3 114229117 114229532 -45370251 + Lx4B LINE L1 6564 7054 -4 3 1456 24 67 0 0 chr3 114229532 114229577 -45370206 + AT_rich Low_complexity Low_complexity 1 45 0 3 1456 180 0 0 0 chr3 114229930 114229950 -45369833 + (TTTTTA)n Simple_repeat Simple_repeat 4 23 0 3 1456 788 191 30 12 chr3 114229971 114230135 -45369648 - Lx3A LINE L1 -6 6975 6809 3 1456 604 227 50 0 chr3 114230293 114230434 -45369349 - Lx9 LINE L1 -441 7203 7056 3 1456 419 221 0 22 chr3 114230434 114230568 -45369215 + Lx9 LINE L1 7513 7643 -1 3 1456 225 279 13 0 chr3 114232398 114232477 -45367306 + (TTAAA)n Simple_repeat Simple_repeat 1 80 0 3 1456 570 325 48 24 chr3 114232489 114232697 -45367086 + B3 SINE B2 2 214 -2 3 1456 13755 219 111 42 chr3 114233459 114234694 -45365089 + L1_Mus1 LINE L1 895 2063 -3817 3 1456 414 0 0 0 chr3 114234694 114234740 -45365043 + (CA)n Simple_repeat Simple_repeat 2 47 0 3 1456 13755 174 107 36 chr3 114234740 114238774 -45361009 + L1_Mus1 LINE L1 2064 6565 -2 3 1456 3779 221 34 18 chr3 114238792 114239755 -45360028 + L1_Mur3 LINE L1 4441 5419 -461 3 1456 402 211 0 0 chr3 114239848 114239952 -45359831 + (TA)n Simple_repeat Simple_repeat 2 105 0 3 1456 1989 91 7 3 chr3 114240013 114240299 -45359484 - L1_Mus3 LINE L1 0 6638 6352 3 1456 1902 118 0 4 chr3 114240299 114240566 -45359217 + L1_Mus3 LINE L1 5997 6263 -375 3 1456 2437 142 33 12 chr3 114240838 114241257 -45358526 + Lx2 LINE L1 6570 6997 0 3 1456 375 337 65 27 chr3 114241443 114241629 -45358154 + L2 LINE L2 1096 1288 -2131 3 1456 225 94 0 0 chr3 114242375 114242407 -45357376 + (CATA)n Simple_repeat Simple_repeat 1 32 0 3 1456 192 77 0 0 chr3 114242937 114242963 -45356820 + (TG)n Simple_repeat Simple_repeat 2 27 0 3 1456 5191 59 1 1 chr3 114242966 114243627 -45356156 - L1Md_F2 LINE L1 -2 6580 5920 3 1456 674 130 0 17 chr3 114243651 114243768 -45356015 - BC1_Mm scRNA scRNA -35 117 3 3 1456 486 0 0 0 chr3 114244262 114244316 -45355467 + (CA)n Simple_repeat Simple_repeat 1 54 0 3 1456 468 299 52 21 chr3 114245107 114245298 -45354485 + B3A SINE B2 2 198 0 3 1456 326 217 14 0 chr3 114245406 114245475 -45354308 - Lx8 LINE L1 -1580 5893 5824 3 1456 302 373 77 82 chr3 114245498 114246228 -45353555 + L2b LINE L2 1990 2715 -704 3 1456 318 178 264 11 chr3 114246290 114246472 -45353311 + Lx9 LINE L1 7411 7638 -6 3 1456 1021 165 130 0 chr3 114247096 114247296 -45352487 - URR1A DNA MER1_type 0 226 1 3 1456 677 271 120 50 chr3 114247917 114248259 -45351524 - RMER20B LTR ERVK -214 413 48 3 1456 240 366 81 15 chr3 114248740 114248876 -45350907 - B1F2 SINE Alu -1 148 4 3 1456 287 290 9 107 chr3 114249316 114249428 -45350355 + L2b LINE L2 3054 3154 -221 3 1456 610 143 16 21 chr3 114249751 114249938 -45349845 + (TCTA)n Simple_repeat Simple_repeat 1 186 0 3 1456 341 336 17 0 chr3 114249946 114250062 -45349721 - ID_B1 SINE B4 -8 216 99 3 1456 1482 131 7 36 chr3 114250134 114250412 -45349371 + RMER17A2 LTR ERVK 7 276 -630 3 1456 381 304 62 29 chr3 114250417 114250661 -45349122 + Lx7 LINE L1 5916 6167 -1529 3 1456 565 144 38 0 chr3 114250709 114250841 -45348942 + (CA)n Simple_repeat Simple_repeat 2 138 0 3 1456 4387 235 36 47 chr3 114250843 114251977 -45347806 + Lx7 LINE L1 6175 7296 -400 3 1456 376 303 143 22 chr3 114251987 114252169 -45347614 - Lx8 LINE L1 -196 7277 7074 3 1456 2420 214 32 6 chr3 114252144 114252675 -45347108 + Lx3C LINE L1 6430 6974 -2 3 1456 769 328 40 25 chr3 114253094 114253648 -45346135 - L1_Mur3 LINE L1 -321 5559 4998 3 1456 280 185 19 0 chr3 114253654 114253708 -45346075 - RLTR11A LTR ERVK 0 528 474 3 1456 12994 80 4 16 chr3 114253727 114256228 -45343555 - L1Md_F2 LINE L1 -17 6565 4098 3 1456 8997 75 23 2 chr3 114256229 114256752 -45343031 - L1Md_F2 LINE L1 -3368 2515 1969 3 1456 207 0 0 0 chr3 114256752 114256775 -45343008 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 3 1456 8997 102 48 1 chr3 114256775 114258293 -45341490 - L1Md_F2 LINE L1 -3915 1968 389 3 1456 2656 183 29 18 chr3 114258293 114258428 -45341355 - RLTR11A LTR ERVK -34 494 362 3 1456 3077 56 10 0 chr3 114258428 114258820 -45340963 + MTA_Mm LTR MaLR 1 396 0 3 1456 2656 183 29 18 chr3 114258820 114259173 -45340610 - RLTR11A LTR ERVK -167 361 1 3 1456 642 312 18 26 chr3 114259191 114259533 -45340250 - L1_Mur3 LINE L1 -925 4955 4617 3 1456 23 0 0 0 chr3 114259795 114259818 -45339965 + AT_rich Low_complexity Low_complexity 1 23 0 3 1456 19511 62 5 47 chr3 114259973 114262257 -45337526 - L1Md_F2 LINE L1 -12 6570 4282 3 1456 1833 34 8 36 chr3 114262257 114262505 -45337278 - L1Md_F3 LINE L1 -2 6582 6342 3 1456 19511 68 0 82 chr3 114262505 114263878 -45335905 - L1Md_F2 LINE L1 -1602 4281 3147 3 1456 333 333 0 0 chr3 114264223 114264295 -45335488 + ID4_ SINE ID 1 72 -11 3 1456 325 308 0 0 chr3 114264237 114264302 -45335481 + tRNA-Ala-GCY_ tRNA tRNA 9 73 -2 3 1456 200 330 116 42 chr3 114266292 114266507 -45333276 - MIR SINE MIR -3 259 29 3 1456 1217 90 6 0 chr3 114266909 114267086 -45332697 + (GAAA)n Simple_repeat Simple_repeat 1 178 0 3 1456 650 35 12 0 chr3 114267087 114267172 -45332611 + (GGAA)n Simple_repeat Simple_repeat 4 89 0 3 1456 1623 151 22 4 chr3 114267429 114267702 -45332081 - Lx4B LINE L1 -286 6772 6495 3 1456 815 244 103 19 chr3 114267691 114267954 -45331829 + Lx5 LINE L1 6760 7044 -6 3 1456 5827 113 9 6 chr3 114268858 114269738 -45330045 - Lx3_Mus LINE L1 -11 6998 6116 3 1456 246 259 39 100 chr3 114270864 114270921 -45328862 + Lx7 LINE L1 7317 7367 -329 3 1456 186 43 0 0 chr3 114270921 114270944 -45328839 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 3 1456 246 259 39 100 chr3 114270944 114271066 -45328717 + Lx7 LINE L1 7368 7485 -211 3 1456 22 56 0 0 chr3 114271186 114271222 -45328561 + AT_rich Low_complexity Low_complexity 1 36 0 3 1456 599 322 44 52 chr3 114271646 114272220 -45327563 - L1MD1 LINE L1 -403 5839 5271 4 1456 270 164 0 0 chr3 114272387 114272442 -45327341 + (TAAA)n Simple_repeat Simple_repeat 2 56 0 4 1456 350 240 138 13 chr3 114272500 114272652 -45327131 + L1MCa LINE L1 2140 2310 -4198 4 1456 459 179 8 17 chr3 114272939 114273058 -45326725 + Lx9 LINE L1 7504 7621 -23 4 1456 1108 68 7 0 chr3 114273089 114273235 -45326548 - B1_Mus1 SINE Alu 0 148 2 4 1456 195 49 48 24 chr3 114273462 114273504 -45326279 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 4 1456 257 153 14 0 chr3 114273583 114273655 -45326128 + (CA)n Simple_repeat Simple_repeat 2 74 0 4 1456 245 177 13 0 chr3 114273913 114273992 -45325791 + GA-rich Low_complexity Low_complexity 2 81 0 4 1456 21 36 0 0 chr3 114274518 114274546 -45325237 + AT_rich Low_complexity Low_complexity 1 28 0 4 1456 444 19 0 0 chr3 114274684 114274737 -45325046 + (TTTA)n Simple_repeat Simple_repeat 3 55 0 4 1456 352 343 42 0 chr3 114274748 114274891 -45324892 - RSINE1 SINE B4 -11 154 6 4 1456 23 0 0 0 chr3 114276711 114276734 -45323049 + AT_rich Low_complexity Low_complexity 1 23 0 4 1456 410 330 72 61 chr3 114276951 114277285 -45322498 + MLT1F2 LTR MaLR 75 394 -175 4 1456 302 188 72 0 chr3 114278183 114278252 -45321531 + L2 LINE L2 681 754 -2665 4 1456 526 296 37 5 chr3 114278279 114278469 -45321314 - MER67C LTR ERV1 0 711 516 4 1456 318 277 96 64 chr3 114278610 114278720 -45321063 - RMER17C LTR ERVK -183 227 118 4 1456 1026 97 0 0 chr3 114278720 114278895 -45320888 + (GA)n Simple_repeat Simple_repeat 1 175 0 4 1456 318 277 96 64 chr3 114278895 114278919 -45320864 - RMER17C LTR ERVK -293 117 87 4 1456 225 0 0 0 chr3 114278919 114278944 -45320839 + (CA)n Simple_repeat Simple_repeat 2 26 0 4 1456 432 0 0 0 chr3 114278944 114278991 -45320792 + (GA)n Simple_repeat Simple_repeat 2 49 0 4 1456 318 277 96 64 chr3 114278991 114279074 -45320709 - RMER17C LTR ERVK -324 86 2 4 1456 367 310 120 23 chr3 114279084 114279259 -45320524 - MER67C LTR ERV1 -229 482 291 4 1456 2359 132 26 21 chr3 114279360 114279778 -45320005 - BGLII_Mus LTR ERVK -2 420 1 4 1456 779 310 27 21 chr3 114280004 114280273 -45319510 + ORR1D2 LTR MaLR 3 276 -108 4 1456 21 82 0 0 chr3 114280532 114280581 -45319202 + AT_rich Low_complexity Low_complexity 1 49 0 4 1456 324 0 0 0 chr3 114282053 114282089 -45317694 + (CA)n Simple_repeat Simple_repeat 1 36 0 4 1456 24 67 0 0 chr3 114282754 114282799 -45316984 + AT_rich Low_complexity Low_complexity 1 45 0 4 1456 471 113 0 0 chr3 114282979 114283050 -45316733 + (CACG)n Simple_repeat Simple_repeat 1 71 0 4 1456 1347 96 0 16 chr3 114286348 114286538 -45313245 + B2_Mm2 SINE B2 1 187 -8 4 1456 21 0 0 0 chr3 114287133 114287154 -45312629 + AT_rich Low_complexity Low_complexity 1 21 0 4 1456 1073 329 57 15 chr3 114287238 114287695 -45312088 - Lx7 LINE L1 -531 7165 6690 4 1456 257 281 21 43 chr3 114287707 114287800 -45311983 + MLT1C LTR MaLR 318 408 -59 4 1456 723 303 9 19 chr3 114287916 114288128 -45311655 - Lx6 LINE L1 -113 7347 7138 4 1456 315 0 0 0 chr3 114288134 114288169 -45311614 + (CA)n Simple_repeat Simple_repeat 2 36 0 4 1456 344 117 0 0 chr3 114288198 114288258 -45311525 - Lx2 LINE L1 -4 6993 6934 4 1456 15025 123 32 5 chr3 114288258 114290764 -45309019 - L1_Mus3 LINE L1 -578 6060 3487 4 1456 1994 103 33 208 chr3 114290774 114291350 -45308433 - IAPLTR2b LTR ERVK 0 475 1 4 1456 6138 42 3 12 chr3 114291350 114292103 -45307680 - IAPEz-int LTR ERVK 0 6481 5736 4 1456 2271 54 0 0 chr3 114292102 114292380 -45307403 - IAPEz-int LTR ERVK -4845 1636 1359 4 1456 3452 69 4 16 chr3 114292380 114292958 -45306825 - IAPEz-int LTR ERVK -5819 662 168 4 1456 234 321 0 0 chr3 114292958 114293011 -45306772 - RLTR27 LTR ERVK -34 275 223 4 1456 1028 104 25 103 chr3 114293011 114293214 -45306569 - IAPEz-int LTR ERVK -6286 195 9 4 1456 2377 68 15 27 chr3 114293215 114293546 -45306237 - IAPLTR2b LTR ERVK 0 327 1 4 22 8192 125 27 21 chr3 114293549 114294954 -45304829 - MusHAL1 LINE L1 -403 2309 896 4 1457 5989 103 60 52 chr3 114295004 114296062 -45303721 - RLTR22_Mur LTR ERVK 0 1848 782 4 1457 7921 41 1 0 chr3 114296062 114297281 -45302502 - L1Md_T LINE L1 -15 6567 5348 4 1457 3207 51 93 10 chr3 114297272 114297809 -45301974 + L1_Mm LINE L1 4894 5589 -297 4 1457 8956 5 0 0 chr3 114297809 114298805 -45300978 + L1Md_A LINE L1 5587 6582 0 4 1457 442 0 0 0 chr3 114298805 114298854 -45300929 + L1_Mm LINE L1 5294 5342 -541 4 1457 5537 79 47 51 chr3 114298854 114299719 -45300064 - RLTR22_Mus LTR ERVK -945 863 2 4 1457 23 33 0 0 chr3 114300192 114300222 -45299561 + AT_rich Low_complexity Low_complexity 1 30 0 4 1457 9222 183 67 5 chr3 114301688 114301787 -45297996 - L1_Mur2 LINE L1 -2300 3577 3475 4 1457 489 34 0 0 chr3 114301787 114301846 -45297937 + (TG)n Simple_repeat Simple_repeat 1 59 0 4 1457 9222 183 67 5 chr3 114301846 114302143 -45297640 - L1_Mur2 LINE L1 -2403 3474 3129 4 1457 207 0 0 0 chr3 114302143 114302166 -45297617 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 4 1457 9222 183 67 5 chr3 114302166 114303865 -45295918 - L1_Mur2 LINE L1 -2749 3128 1353 4 1457 1927 121 17 7 chr3 114303866 114304165 -45295618 - ORR1A2 LTR MaLR -25 302 1 4 1457 615 218 63 85 chr3 114304165 114304536 -45295247 - L1_Mur2 LINE L1 -5801 1285 939 4 1457 789 94 0 0 chr3 114305380 114305486 -45294297 + B1_Mus2 SINE Alu 2 107 -40 4 1457 32866 99 6 24 chr3 114305782 114312043 -45287740 - L1Md_F2 LINE L1 -12 6570 446 4 1457 444 37 0 0 chr3 114312072 114312126 -45287657 + (TA)n Simple_repeat Simple_repeat 2 55 0 4 1457 219 167 0 0 chr3 114312307 114312349 -45287434 + (TG)n Simple_repeat Simple_repeat 2 43 0 4 1457 186 71 0 0 chr3 114312575 114312603 -45287180 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 4 1457 3074 242 61 90 chr3 114312827 114313881 -45285902 + RMER1B Other Other 44 1066 0 4 1457 183 214 0 0 chr3 114313912 114313982 -45285801 + (TA)n Simple_repeat Simple_repeat 2 71 0 4 1457 33 43 0 0 chr3 114314054 114314101 -45285682 + AT_rich Low_complexity Low_complexity 1 47 0 4 1457 1212 270 81 29 chr3 114314432 114314851 -45284932 - BGLII_B LTR ERVK 0 441 1 4 1457 519 160 0 0 chr3 114314907 114315001 -45284782 + (TA)n Simple_repeat Simple_repeat 2 95 0 4 1457 2128 151 11 3 chr3 114315001 114315352 -45284431 - Lx2 LINE L1 -7 6990 6637 4 1457 2334 234 22 46 chr3 114316876 114316985 -45282798 - Lx LINE L1 -2 6564 6475 4 1457 186 43 0 0 chr3 114316985 114317008 -45282775 + (CCCA)n Simple_repeat Simple_repeat 3 25 0 4 1457 2551 157 26 28 chr3 114317008 114317583 -45282200 - Lx LINE L1 -92 6474 5902 4 1457 622 262 226 44 chr3 114317905 114318248 -45281535 - MTD LTR MaLR -14 405 1 4 1457 230 380 13 0 chr3 114318359 114318438 -45281345 - ID_B1 SINE B4 -64 160 81 4 1457 24 32 0 0 chr3 114320386 114320417 -45279366 + AT_rich Low_complexity Low_complexity 1 31 0 4 1457 225 0 0 0 chr3 114321429 114321454 -45278329 + (TA)n Simple_repeat Simple_repeat 1 25 0 4 1457 321 312 62 8 chr3 114321534 114321663 -45278120 - RMER15 LTR ERVL -16 559 424 4 1457 183 100 0 0 chr3 114322808 114322838 -45276945 + (TC)n Simple_repeat Simple_repeat 1 30 0 4 1457 261 180 0 0 chr3 114322839 114322889 -45276894 + (TG)n Simple_repeat Simple_repeat 1 50 0 4 1457 453 305 34 41 chr3 114323224 114323371 -45276412 - B1F SINE Alu -1 148 3 4 1457 5468 77 201 0 chr3 114323491 114324351 -45275432 - L1_Mm LINE L1 -1434 4449 3417 4 1457 4141 55 2 0 chr3 114324350 114324864 -45274919 + L1_Mm LINE L1 5302 5816 -67 4 1457 1094 45 0 0 chr3 114324848 114324982 -45274801 - L1Md_F2 LINE L1 -666 5916 5783 4 1457 8419 37 9 1 chr3 114324978 114326676 -45273107 - L1Md_F2 LINE L1 0 6582 4871 4 1457 5468 45 0 1 chr3 114326676 114327343 -45272440 + L1Md_T LINE L1 5917 6582 0 4 1457 5962 66 0 3 chr3 114327343 114328116 -45271667 + L1Md_F2 LINE L1 5800 6570 -12 4 1457 1119 345 82 21 chr3 114328583 114329347 -45270436 + Lx8 LINE L1 6186 6996 -477 4 1457 22 80 0 0 chr3 114329962 114330012 -45269771 + AT_rich Low_complexity Low_complexity 1 50 0 4 1457 532 274 75 29 chr3 114330947 114331120 -45268663 + MTD LTR MaLR 17 197 -222 4 1457 410 286 37 65 chr3 114331154 114331371 -45268412 - B3 SINE B2 -5 211 1 4 1457 244 369 25 31 chr3 114331901 114332063 -45267720 - L1MEc LINE L1 -5735 665 505 4 1457 503 90 13 0 chr3 114332202 114332280 -45267503 + (TC)n Simple_repeat Simple_repeat 2 80 0 4 1457 211 260 10 30 chr3 114332928 114333027 -45266756 + A-rich Low_complexity Low_complexity 2 98 0 4 1457 23 33 0 0 chr3 114333117 114333147 -45266636 + AT_rich Low_complexity Low_complexity 1 30 0 4 1457 4679 179 23 13 chr3 114333427 114334295 -45265488 + Lx4A LINE L1 6182 7058 0 4 1457 203 233 0 32 chr3 114335933 114335995 -45263788 + (CAAA)n Simple_repeat Simple_repeat 2 61 0 4 1457 192 67 42 62 chr3 114336146 114336194 -45263589 + T-rich Low_complexity Low_complexity 6 52 0 4 1457 27 0 0 0 chr3 114336301 114336328 -45263455 + AT_rich Low_complexity Low_complexity 1 27 0 4 1457 283 250 17 0 chr3 114338121 114338181 -45261602 + MER94 DNA AcHobo 55 115 -19 4 1457 378 334 216 46 chr3 114338273 114338643 -45261140 + LTR89 LTR ERVL? 214 646 -233 4 1457 1012 222 74 99 chr3 114338734 114339128 -45260655 + ORR1C2 LTR MaLR 1 384 0 4 1457 1525 269 60 10 chr3 114339715 114340113 -45259670 - MTD LTR MaLR 0 419 2 4 1457 645 335 116 12 chr3 114340291 114340626 -45259157 - RMER15 LTR ERVL -18 557 188 4 1457 3473 154 91 6 chr3 114340694 114341333 -45258450 - Lx2B LINE L1 0 7000 6308 4 1457 221 57 29 0 chr3 114341681 114341716 -45258067 + (TTG)n Simple_repeat Simple_repeat 2 37 0 4 1457 224 200 0 0 chr3 114341942 114341982 -45257801 + CT-rich Low_complexity Low_complexity 1 40 0 4 1457 1585 153 4 0 chr3 114342528 114342802 -45256981 + L1_Mur2 LINE L1 4586 4860 -1017 4 1457 295 67 0 0 chr3 114342802 114342847 -45256936 + L1_Mus1 LINE L1 6445 6489 -78 4 1457 4897 119 12 8 chr3 114342847 114343585 -45256198 + Lx LINE L1 5913 6653 -1 4 1457 26 0 0 0 chr3 114343950 114343976 -45255807 + AT_rich Low_complexity Low_complexity 1 26 0 4 1457 401 369 37 54 chr3 114344608 114344967 -45254816 - MTEa LTR MaLR -5 374 1 4 1457 448 298 0 8 chr3 114345190 114345312 -45254471 + ID_B1 SINE B4 104 224 0 4 1457 1659 135 79 11 chr3 114345395 114345672 -45254111 - Lx LINE L1 -7 6993 6698 5 1457 195 246 0 0 chr3 114345917 114345974 -45253809 + (CA)n Simple_repeat Simple_repeat 2 58 0 5 1457 6230 129 48 3 chr3 114346457 114347447 -45252336 - Lx LINE L1 -3 6651 5617 5 1457 267 54 0 0 chr3 114347610 114347647 -45252136 + (CAGAGA)n Simple_repeat Simple_repeat 6 42 0 5 1457 1238 311 67 5 chr3 114347654 114348074 -45251709 + Lx6 LINE L1 6842 7287 -173 5 1457 26 50 0 0 chr3 114348115 114348155 -45251628 + AT_rich Low_complexity Low_complexity 1 40 0 5 1457 1156 79 6 0 chr3 114348444 114348608 -45251175 - L1Md_F3 LINE L1 -14 6570 6406 5 1457 25 31 0 0 chr3 114348703 114348735 -45251048 + AT_rich Low_complexity Low_complexity 1 32 0 5 1457 24 0 0 0 chr3 114348838 114348862 -45250921 + AT_rich Low_complexity Low_complexity 1 24 0 5 1457 448 259 62 45 chr3 114349787 114349965 -45249818 - Lx8 LINE L1 -326 7147 6967 5 1457 189 0 0 0 chr3 114351162 114351183 -45248600 + (CA)n Simple_repeat Simple_repeat 2 22 0 5 1457 513 0 0 0 chr3 114351183 114351239 -45248544 + (GA)n Simple_repeat Simple_repeat 2 58 0 5 1457 475 238 67 84 chr3 114351439 114351577 -45248206 - RMER17D2 LTR ERVK -354 455 314 5 1457 303 93 0 0 chr3 114351577 114351620 -45248163 + (CAGG)n Simple_repeat Simple_repeat 1 43 0 5 1457 475 238 67 84 chr3 114351620 114351779 -45248004 - RMER17D2 LTR ERVK -496 313 164 5 1457 315 49 0 0 chr3 114352381 114352422 -45247361 + (CA)n Simple_repeat Simple_repeat 2 42 0 5 1457 223 111 55 18 chr3 114352427 114352482 -45247301 + (TA)n Simple_repeat Simple_repeat 1 57 0 5 1457 551 274 7 15 chr3 114353563 114353700 -45246083 + Lx6 LINE L1 7026 7161 -299 5 1457 10379 201 29 14 chr3 114353720 114356104 -45243679 - Lx5 LINE L1 -7 7043 4625 5 1457 3815 56 44 12 chr3 114356104 114356607 -45243176 - MURVY-LTR LTR ERV1 0 519 1 5 1457 10379 185 22 11 chr3 114356607 114357469 -45242314 - Lx5 LINE L1 -1253 4630 3743 5 1457 405 39 0 0 chr3 114357469 114357520 -45242263 + (CA)n Simple_repeat Simple_repeat 2 52 0 5 1457 8875 223 243 14 chr3 114357520 114357555 -45242228 - Lx5 LINE L1 -2139 3744 3699 5 1457 1868 96 0 4 chr3 114357555 114357817 -45241966 - L1_Mus2 LINE L1 0 6566 6306 5 1457 8875 212 211 12 chr3 114357817 114359571 -45240212 - Lx5 LINE L1 -2185 3698 1105 5 1457 34986 68 3 3 chr3 114359565 114365567 -45234216 - L1Md_F2 LINE L1 -1 6584 483 5 1457 2347 190 16 3 chr3 114365567 114366077 -45233706 - L1Md_F LINE L1 -5494 1125 483 5 1457 246 81 0 0 chr3 114366102 114366139 -45233644 + (TG)n Simple_repeat Simple_repeat 2 38 0 5 1457 1343 203 13 10 chr3 114366139 114366437 -45233346 - L1_Mur2 LINE L1 -2145 3732 3434 5 1457 541 290 134 5 chr3 114366437 114366638 -45233145 + ORR1E LTR MaLR 22 248 -111 5 1457 1416 166 41 4 chr3 114367996 114368238 -45231545 - Lx2B LINE L1 -534 6466 6216 5 1457 22 56 0 0 chr3 114368290 114368326 -45231457 + AT_rich Low_complexity Low_complexity 1 36 0 5 1457 627 185 45 15 chr3 114368366 114368498 -45231285 - Lx7 LINE L1 -754 6942 6807 5 1457 3124 191 120 19 chr3 114368502 114369063 -45230720 - L1_Mur3 LINE L1 -12 5868 5248 5 1457 414 0 0 0 chr3 114369063 114369109 -45230674 + (TA)n Simple_repeat Simple_repeat 2 47 0 5 1457 3124 191 120 19 chr3 114369109 114369320 -45230463 - L1_Mur3 LINE L1 -633 5247 5019 5 1457 646 238 19 12 chr3 114369314 114369476 -45230307 + Lx7 LINE L1 6949 7111 -585 5 1457 4569 133 107 7 chr3 114369702 114371116 -45228667 + L1VL2 LINE L1 59 1641 -1974 5 1457 4166 43 41 0 chr3 114371134 114371692 -45228091 - L1Md_F2 LINE L1 -653 5929 5353 5 1457 4820 77 3 8 chr3 114371689 114372561 -45227222 + L1Md_F2 LINE L1 5926 6582 0 5 1457 35098 45 2 3 chr3 114372564 114377774 -45222009 + L1Md_T LINE L1 289 5589 -297 5 1457 8368 36 0 0 chr3 114377774 114378770 -45221013 + L1Md_T LINE L1 5590 6585 0 5 1457 1520 148 122 10 chr3 114378996 114379290 -45220493 - IAPEY3_LTR LTR ERVK -5 327 1 5 1457 13695 147 10 3 chr3 114379388 114381792 -45217991 + L1_Mus3 LINE L1 2001 4422 -1461 5 1457 2346 159 19 5 chr3 114381793 114382215 -45217568 + RMER17D2 LTR ERVK 1 428 -381 5 1457 7121 93 22 10 chr3 114382217 114383300 -45216483 + L1_Mus3 LINE L1 5540 6637 -1 5 1457 342 297 167 52 chr3 114383468 114383756 -45216027 + L1M4c LINE L1 1300 1620 -4764 5 1457 315 341 34 34 chr3 114383822 114383998 -45215785 - B4A SINE B4 -35 257 82 5 1457 495 73 0 0 chr3 114384104 114384172 -45215611 + (TG)n Simple_repeat Simple_repeat 2 69 0 5 1457 1372 92 0 0 chr3 114384298 114384482 -45215301 + L1_Mm LINE L1 5334 5517 -366 5 1457 1097 98 109 0 chr3 114384490 114384664 -45215119 - RMER17D2 LTR ERVK -616 193 1 5 1457 1440 189 93 23 chr3 114384667 114385053 -45214730 + Lx LINE L1 6225 6636 0 5 1457 521 213 40 123 chr3 114385115 114385285 -45214498 + MT2B LTR ERVL 91 259 -325 5 1457 292 269 0 0 chr3 114385285 114385352 -45214431 + B1_Mus2 SINE Alu 3 69 -78 5 1457 1130 74 0 0 chr3 114385369 114385517 -45214266 - B1_Mus1 SINE Alu 0 148 1 5 1457 1233 175 55 12 chr3 114385579 114385888 -45213895 + RMER6A LTR ERVK 348 690 0 5 1457 266 371 34 25 chr3 114385989 114386108 -45213675 + B3 SINE B2 86 205 -11 5 1457 250 227 15 131 chr3 114386111 114386248 -45213535 - Lx4B LINE L1 -2 7056 6936 5 1457 4347 199 87 21 chr3 114386237 114386493 -45213290 - Lx5 LINE L1 -270 6780 6525 5 1457 3409 164 95 34 chr3 114386493 114387145 -45212638 - RLTR17 LTR ERVK 0 692 1 5 1457 4347 201 85 22 chr3 114387145 114387897 -45211886 - Lx5 LINE L1 -526 6524 5735 5 1457 25 65 0 0 chr3 114388638 114388684 -45211099 + AT_rich Low_complexity Low_complexity 1 46 0 5 1457 25777 111 11 7 chr3 114389251 114390892 -45208891 - L1_Mus3 LINE L1 -7 6631 4982 5 1457 3971 103 50 13 chr3 114390892 114391493 -45208290 - L1_Mus2 LINE L1 0 6566 5944 5 1457 25777 153 11 14 chr3 114391493 114391542 -45208241 - L1_Mus3 LINE L1 -902 4981 4935 5 1457 2397 41 0 0 chr3 114391542 114391832 -45207951 + L1Md_A LINE L1 6291 6580 -2 5 1457 25777 153 11 14 chr3 114391832 114392363 -45207420 - L1_Mus3 LINE L1 -949 4934 4392 5 1457 3281 36 3 0 chr3 114392363 114392747 -45207036 + IAPEY_LTR LTR ERVK 1 385 0 5 1457 25777 153 11 14 chr3 114392747 114394792 -45204991 - L1_Mus3 LINE L1 -1492 4391 2359 5 1457 221 0 35 0 chr3 114394792 114394821 -45204962 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 5 1457 25777 155 12 18 chr3 114394821 114396110 -45203673 - L1_Mus3 LINE L1 -3525 2358 1077 5 1457 1190 48 0 0 chr3 114396110 114396255 -45203528 + B1_Mm SINE Alu 2 146 -1 5 1457 2823 171 15 60 chr3 114396255 114396588 -45203195 - L1_Mus3 LINE L1 -5581 1076 768 5 1457 5699 161 47 90 chr3 114396596 114397890 -45201893 - Lx2B LINE L1 -5 6995 5755 5 1457 396 0 0 0 chr3 114398076 114398120 -45201663 + (GA)n Simple_repeat Simple_repeat 2 45 0 5 1457 1200 111 0 0 chr3 114398128 114398308 -45201475 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 5 1457 22 0 0 0 chr3 114398446 114398468 -45201315 + AT_rich Low_complexity Low_complexity 1 22 0 5 1457 203 395 0 11 chr3 114398815 114398902 -45200881 - L2c LINE L2 -371 3016 2931 5 1457 226 125 196 0 chr3 114399209 114399265 -45200518 + L1MC4a LINE L1 7814 7880 -2 5 1457 28 0 0 0 chr3 114399316 114399344 -45200439 + AT_rich Low_complexity Low_complexity 1 28 0 5 1457 366 312 58 77 chr3 114400986 114401194 -45198589 - LTR33 LTR ERVL -20 495 292 5 1457 4435 91 45 16 chr3 114401995 114402563 -45197220 - Lx3_Mus LINE L1 -513 6496 5927 5 1457 243 61 0 0 chr3 114402563 114402596 -45197187 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 5 1457 4435 91 45 16 chr3 114402596 114402697 -45197086 - Lx3_Mus LINE L1 -1083 5926 5809 5 1457 2494 86 19 3 chr3 114402698 114403070 -45196713 + Lx3_Mus LINE L1 6620 6997 -12 5 1457 294 29 0 0 chr3 114403072 114403107 -45196676 + (TA)n Simple_repeat Simple_repeat 2 36 0 5 1457 10415 68 6 0 chr3 114404108 114406096 -45193687 + L1Md_F2 LINE L1 4528 6530 -52 5 1457 415 292 49 6 chr3 114407076 114407238 -45192545 + Lx8 LINE L1 6847 7015 -458 5 1457 504 285 147 14 chr3 114407248 114407533 -45192250 - L1MC LINE L1 -3422 2724 2402 5 1457 260 267 35 33 chr3 114407663 114407838 -45191945 - L1MCa LINE L1 -3956 2362 2188 5 1457 502 316 55 51 chr3 114408273 114408490 -45191293 + MER58A DNA MER1_type 7 224 0 5 1457 393 39 0 0 chr3 114408531 114408582 -45191201 + (TG)n Simple_repeat Simple_repeat 2 52 0 5 1457 23 0 0 0 chr3 114408951 114408974 -45190809 + AT_rich Low_complexity Low_complexity 1 23 0 5 1457 2135 170 93 5 chr3 114409062 114409470 -45190313 + Lx3C LINE L1 6529 6972 -4 5 1457 183 42 0 0 chr3 114410042 114410066 -45189717 + (A)n Simple_repeat Simple_repeat 1 24 0 5 1457 813 304 107 58 chr3 114410137 114410398 -45189385 + RLTR26 LTR ERVK 13 300 -342 5 1457 252 0 0 0 chr3 114410398 114410426 -45189357 + (TA)n Simple_repeat Simple_repeat 2 29 0 5 1457 813 297 116 55 chr3 114410426 114410577 -45189206 + RLTR26 LTR ERVK 301 452 -190 5 1457 1962 116 39 12 chr3 114410684 114410702 -45189081 - Lx2 LINE L1 -1070 5927 5906 5 1457 2612 202 26 7 chr3 114410702 114411246 -45188537 - Lx LINE L1 -4 6650 6097 5 1457 21468 174 42 17 chr3 114411246 114413558 -45186225 - Lx2 LINE L1 -1092 5905 3492 5 1457 552 15 0 0 chr3 114413558 114413623 -45186160 + (TG)n Simple_repeat Simple_repeat 2 66 0 5 1457 21468 182 42 18 chr3 114413623 114415149 -45184634 - Lx2 LINE L1 -2395 3491 1966 5 1457 468 0 0 0 chr3 114415149 114415201 -45184582 + (TTTA)n Simple_repeat Simple_repeat 2 53 0 5 1457 21468 155 25 7 chr3 114415201 114416642 -45183141 - Lx2 LINE L1 -3921 1965 507 5 1457 37326 44 4 1 chr3 114417480 114423593 -45176190 - L1Md_T LINE L1 -1 6581 450 5 1457 813 95 0 0 chr3 114423713 114423829 -45175954 + (TTTC)n Simple_repeat Simple_repeat 1 116 0 5 1457 963 119 0 0 chr3 114423832 114423966 -45175817 - B1_Mus1 SINE Alu -14 134 1 5 1457 25 31 0 0 chr3 114425558 114425590 -45174193 + AT_rich Low_complexity Low_complexity 1 32 0 5 1458 234 302 160 40 chr3 114425861 114425961 -45173822 + B4A SINE B4 1 112 -180 5 1458 509 376 13 6 chr3 114426037 114426195 -45173588 + B3A SINE B2 2 160 -38 5 1458 477 50 0 0 chr3 114426197 114426257 -45173526 + (CA)n Simple_repeat Simple_repeat 1 60 0 5 1458 288 53 0 0 chr3 114426257 114426295 -45173488 + (GA)n Simple_repeat Simple_repeat 1 38 0 5 1458 32 67 0 0 chr3 114426310 114426370 -45173413 + AT_rich Low_complexity Low_complexity 1 60 0 5 1458 22 56 0 0 chr3 114426389 114426425 -45173358 + AT_rich Low_complexity Low_complexity 1 36 0 5 1458 1321 235 203 24 chr3 114426562 114426980 -45172803 + Lx4B LINE L1 6535 7027 -31 5 1458 265 230 40 26 chr3 114426992 114427068 -45172715 + Lx8 LINE L1 6188 6264 -1209 5 1458 2679 156 20 57 chr3 114428149 114429274 -45170509 + L1Md_F LINE L1 509 1575 -2339 5 1458 1413 160 14 130 chr3 114429280 114429633 -45170150 + RLTRETN_Mm LTR ERVK 11 322 0 5 1458 301 0 0 0 chr3 114429654 114429690 -45170093 - L1_Mm LINE L1 -3625 2258 2223 5 1458 3333 47 0 0 chr3 114429690 114430093 -45169690 + L1Md_F3 LINE L1 6168 6570 -14 6 1458 12823 125 68 2 chr3 114430094 114432269 -45167514 + L1Md_F LINE L1 1572 3890 -1993 5 1458 1560 273 41 75 chr3 114432912 114433763 -45166020 + L1_Rod LINE L1 3804 4625 -1222 6 1458 378 0 0 0 chr3 114433793 114433835 -45165948 + (CAA)n Simple_repeat Simple_repeat 1 42 0 6 1458 7444 100 13 9 chr3 114433949 114435874 -45163909 - L1VL2 LINE L1 -1586 2029 95 6 1458 1045 292 72 98 chr3 114435880 114436480 -45163303 - Lx9 LINE L1 -703 6941 6358 6 1458 371 292 143 5 chr3 114436594 114436811 -45162972 - L1MCa LINE L1 -4090 2418 2172 6 1458 8327 40 4 2 chr3 114436830 114438084 -45161699 - L1Md_F3 LINE L1 -1 6583 5327 6 1458 319 231 132 33 chr3 114438084 114438236 -45161547 - L1MCa LINE L1 -4383 2125 1959 6 1458 282 29 0 0 chr3 114438259 114438294 -45161489 + (TG)n Simple_repeat Simple_repeat 2 36 0 6 1458 251 387 38 25 chr3 114438335 114438494 -45161289 - RSINE1 SINE B4 -2 163 3 6 1458 24 85 0 0 chr3 114438560 114438619 -45161164 + AT_rich Low_complexity Low_complexity 1 59 0 6 1458 248 251 100 80 chr3 114438651 114438950 -45160833 - L1MCa LINE L1 -4747 1761 1457 6 1458 419 0 20 0 chr3 114439079 114439130 -45160653 + (TG)n Simple_repeat Simple_repeat 1 52 0 6 1458 720 163 21 43 chr3 114439165 114439306 -45160477 - RLTR13C2 LTR ERVK 0 808 671 6 1458 569 152 40 0 chr3 114439275 114439374 -45160409 + RLTR13C2 LTR ERVK 706 808 0 6 1458 1896 148 87 6 chr3 114439740 114440072 -45159711 + Lx3B LINE L1 6580 6938 -35 6 1458 1147 81 19 0 chr3 114440063 114440223 -45159560 - L1_Mus2 LINE L1 -465 6101 5939 6 1458 3347 63 2 37 chr3 114440224 114440684 -45159099 + L1_Mus2 LINE L1 6122 6565 -1 6 1458 351 143 0 0 chr3 114440693 114440749 -45159034 + Lx3B LINE L1 6917 6972 -1 6 1458 450 0 0 0 chr3 114442525 114442575 -45157208 + (TG)n Simple_repeat Simple_repeat 1 50 0 6 1458 250 246 53 69 chr3 114442765 114442896 -45156887 - Lx8 LINE L1 -1 7472 7344 6 1458 202 220 0 0 chr3 114442927 114442977 -45156806 + A-rich Low_complexity Low_complexity 1 50 0 6 1458 23 0 0 0 chr3 114443856 114443879 -45155904 + AT_rich Low_complexity Low_complexity 1 23 0 6 1458 521 283 62 102 chr3 114444293 114444549 -45155234 - B4 SINE B4 -39 253 8 6 1458 729 375 65 17 chr3 114444699 114445111 -45154672 + MER54A LTR ERVL 467 898 -3 6 1458 516 50 12 24 chr3 114445347 114445429 -45154354 + (TA)n Simple_repeat Simple_repeat 2 82 0 6 1458 264 59 0 0 chr3 114445510 114445544 -45154239 + (TG)n Simple_repeat Simple_repeat 1 34 0 6 1458 939 277 104 7 chr3 114445641 114445910 -45153873 - Lx5 LINE L1 -5 7045 6751 6 1458 2514 178 106 8 chr3 114446213 114446723 -45153060 + Lx5 LINE L1 6224 6783 -267 6 1458 409 301 82 8 chr3 114447330 114447464 -45152319 + RSINE1 SINE B4 3 146 -19 6 1458 23 33 0 0 chr3 114447466 114447496 -45152287 + AT_rich Low_complexity Low_complexity 1 30 0 6 1458 581 284 4 79 chr3 114447830 114448059 -45151724 + B3 SINE B2 1 212 -4 6 1458 32 67 0 0 chr3 114448608 114448668 -45151115 + AT_rich Low_complexity Low_complexity 1 60 0 6 1458 1459 38 0 11 chr3 114449426 114449610 -45150173 - B2_Mm1a SINE B2 -6 187 6 6 1458 330 361 75 56 chr3 114449973 114450225 -45149558 + ORR1E LTR MaLR 82 338 -21 6 1458 510 320 133 25 chr3 114450681 114450921 -45148862 - MLT1A0 LTR MaLR 0 365 100 6 1458 255 286 64 13 chr3 114451185 114451263 -45148520 + RMER15 LTR ERVL 392 473 -102 6 1458 22 35 0 0 chr3 114451545 114451574 -45148209 + AT_rich Low_complexity Low_complexity 1 29 0 6 1458 24 32 0 0 chr3 114452113 114452144 -45147639 + AT_rich Low_complexity Low_complexity 1 31 0 6 1458 25 51 0 0 chr3 114452345 114452384 -45147399 + AT_rich Low_complexity Low_complexity 1 39 0 6 1458 458 168 7 97 chr3 114454432 114454577 -45145206 - Lx9 LINE L1 0 7644 7513 6 1458 360 0 0 0 chr3 114454581 114454621 -45145162 + (CA)n Simple_repeat Simple_repeat 1 40 0 6 1458 694 254 27 33 chr3 114455137 114455320 -45144463 - ORR1D1 LTR MaLR -191 183 2 6 1458 248 222 11 43 chr3 114455425 114455519 -45144264 + (TTTG)n Simple_repeat Simple_repeat 1 91 0 6 1458 498 237 71 14 chr3 114456119 114456260 -45143523 - URR1B DNA MER1_type -16 209 61 6 1458 21 0 0 0 chr3 114456869 114456890 -45142893 + AT_rich Low_complexity Low_complexity 1 21 0 6 1458 4461 133 18 6 chr3 114457063 114457779 -45142004 + Lx4A LINE L1 6331 7055 -3 6 1458 347 204 42 48 chr3 114458048 114458213 -45141570 - Lx9 LINE L1 0 7644 7481 6 1458 205 329 0 0 chr3 114458217 114458296 -45141487 + (TA)n Simple_repeat Simple_repeat 1 79 0 6 1458 3005 224 76 66 chr3 114461166 114462047 -45137736 + RMER19B LTR ERVK 1 890 -12 6 1458 200 125 0 24 chr3 114462934 114462975 -45136808 + (TTTA)n Simple_repeat Simple_repeat 4 43 0 6 1458 219 36 0 0 chr3 114463052 114463080 -45136703 + (T)n Simple_repeat Simple_repeat 1 28 0 6 1458 1328 294 103 13 chr3 114463916 114464684 -45135099 + L1MC1 LINE L1 5365 6226 -1559 6 1458 915 253 79 88 chr3 114464972 114465314 -45134469 - Lx6 LINE L1 -4 7456 7118 6 1458 1481 167 92 0 chr3 114465421 114465714 -45134069 + IAPEY3_LTR LTR ERVK 1 320 -12 6 1458 1040 219 10 0 chr3 114465731 114465936 -45133847 + Lx6 LINE L1 6467 6673 -787 6 1458 226 312 0 49 chr3 114465936 114466017 -45133766 - B3 SINE B2 -139 77 1 6 1458 3588 223 49 31 chr3 114466019 114466880 -45132903 + Lx5 LINE L1 6086 6961 -89 6 1458 207 0 0 0 chr3 114466983 114467006 -45132777 + (CAA)n Simple_repeat Simple_repeat 2 24 0 6 1458 424 320 99 72 chr3 114467064 114467549 -45132234 + L1MC1 LINE L1 6330 6827 -958 6 1458 203 250 0 0 chr3 114467762 114467802 -45131981 + polypurine Low_complexity Low_complexity 1 40 0 6 1458 335 250 38 63 chr3 114467834 114467992 -45131791 + L1MC1 LINE L1 6889 7042 -743 6 1458 26 30 0 0 chr3 114468021 114468054 -45131729 + AT_rich Low_complexity Low_complexity 1 33 0 6 1458 555 364 20 10 chr3 114468070 114468270 -45131513 - ID_B1 SINE B4 -5 219 18 6 1458 6506 63 0 0 chr3 114468443 114469271 -45130512 + L1Md_T LINE L1 5755 6582 0 6 1458 230 352 72 77 chr3 114469532 114469726 -45130057 - MLT1C LTR MaLR -24 443 251 6 1458 21 36 0 0 chr3 114469818 114469846 -45129937 + AT_rich Low_complexity Low_complexity 1 28 0 6 1458 265 320 15 81 chr3 114470270 114470406 -45129377 + BC1_Mm scRNA scRNA 21 147 -5 6 1458 21 0 0 0 chr3 114470512 114470533 -45129250 + AT_rich Low_complexity Low_complexity 1 21 0 6 1458 1023 187 62 29 chr3 114471045 114471287 -45128496 + RMER1C Other Other 1091 1340 -2 6 1458 5369 51 1 6 chr3 114471572 114472245 -45127538 - L1Md_F2 LINE L1 -139 5744 5075 6 1458 6027 66 30 5 chr3 114472245 114472982 -45126801 + L1Md_F2 LINE L1 5745 6481 -101 6 1458 204 40 0 0 chr3 114472982 114473007 -45126776 + (TGGG)n Simple_repeat Simple_repeat 1 25 0 6 1458 6027 66 30 5 chr3 114473007 114473075 -45126708 + L1Md_F2 LINE L1 6482 6568 -14 6 1458 1381 96 10 0 chr3 114473202 114473411 -45126372 + L1_Mus2 LINE L1 6354 6564 -2 6 1458 960 51 29 0 chr3 114473420 114473558 -45126225 + (GAAAA)n Simple_repeat Simple_repeat 4 145 0 6 1458 277 254 0 31 chr3 114473580 114473645 -45126138 + ID_B1 SINE B4 121 183 -41 6 1458 392 270 24 80 chr3 114474568 114474693 -45125090 - RLTR25A LTR ERVK -13 1015 898 6 1458 183 42 0 0 chr3 114474770 114474794 -45124989 + (TTG)n Simple_repeat Simple_repeat 2 25 0 6 1458 731 257 60 39 chr3 114474802 114475085 -45124698 - ORR1A3-int LTR MaLR -963 1000 712 6 1458 1168 197 59 63 chr3 114475038 114475292 -45124491 - MT2B LTR ERVL -314 287 35 6 1458 787 214 117 55 chr3 114475105 114475396 -45124387 - ORR1A3-int LTR MaLR -1156 807 499 6 1458 2256 219 24 71 chr3 114475323 114475869 -45123914 - RLTR25A LTR ERVK -583 520 1 6 1458 22 0 0 0 chr3 114476386 114476408 -45123375 + AT_rich Low_complexity Low_complexity 1 22 0 6 1458 665 299 15 24 chr3 114476622 114476828 -45122955 - ORR1D1 LTR MaLR 0 374 171 6 1458 832 224 27 43 chr3 114476881 114477068 -45122715 - ORR1D1 LTR MaLR -188 186 3 6 1458 42 57 0 0 chr3 114477077 114477147 -45122636 + AT_rich Low_complexity Low_complexity 1 70 0 6 1458 2261 237 89 10 chr3 114477521 114478118 -45121665 - Lx2B LINE L1 -2 6998 6355 6 1458 353 281 40 32 chr3 114478297 114478422 -45121361 - Lx6 LINE L1 -30 7430 7305 6 1458 33 0 0 0 chr3 114479092 114479125 -45120658 + AT_rich Low_complexity Low_complexity 1 33 0 6 1458 618 75 0 0 chr3 114479225 114479318 -45120465 + (TG)n Simple_repeat Simple_repeat 2 94 0 6 1458 639 278 28 9 chr3 114479322 114479536 -45120247 - Lx9 LINE L1 -172 7472 7255 6 1458 224 208 0 0 chr3 114479891 114479967 -45119816 + CT-rich Low_complexity Low_complexity 1 76 0 6 1458 288 0 0 0 chr3 114479969 114480001 -45119782 + (TG)n Simple_repeat Simple_repeat 1 32 0 6 1458 241 305 94 64 chr3 114480072 114480103 -45119680 - L1M3 LINE L1 -1435 4708 4684 6 1458 189 0 0 0 chr3 114480103 114480124 -45119659 + (TTTG)n Simple_repeat Simple_repeat 4 24 0 6 1458 267 302 113 31 chr3 114480124 114480295 -45119488 - L1M3 LINE L1 -1460 4683 4497 6 1458 377 367 108 36 chr3 114480334 114480712 -45119071 - MLT2B1 LTR ERVL -108 446 55 6 1458 3126 63 2 2 chr3 114480712 114481108 -45118675 - MTA_Mm LTR MaLR 0 396 1 6 1458 377 361 110 36 chr3 114481108 114481137 -45118646 - MLT2B1 LTR ERVL -466 54 16 6 1458 2315 58 78 3 chr3 114481137 114481453 -45118330 - MTA_Mm-int LTR MaLR 0 1098 728 6 1458 3640 74 2 8 chr3 114482159 114482636 -45117147 - MT2C_Mm LTR ERVL -1 474 1 6 1458 368 299 79 16 chr3 114482815 114483005 -45116778 + L1M2 LINE L1 5410 5611 -686 6 1458 34 93 0 0 chr3 114483168 114483265 -45116518 + AT_rich Low_complexity Low_complexity 1 97 0 6 1458 30 100 0 0 chr3 114483385 114483485 -45116298 + AT_rich Low_complexity Low_complexity 1 100 0 6 1458 25398 53 1 0 chr3 114483801 114487012 -45112771 + L1Md_F2 LINE L1 2374 5586 -297 6 1458 7983 52 1 1 chr3 114487012 114488008 -45111775 + L1Md_F2 LINE L1 5587 6582 0 6 1458 1108 208 71 77 chr3 114488092 114488273 -45111510 - RMER6C LTR ERVK -1 689 509 6 1458 942 9 0 0 chr3 114488273 114488380 -45111403 + (TTC)n Simple_repeat Simple_repeat 2 108 0 6 1458 1108 208 71 77 chr3 114488380 114488521 -45111262 - RMER6C LTR ERVK -182 508 369 6 1458 272 237 24 95 chr3 114488528 114488612 -45111171 - PB1D9 SINE Alu -36 84 7 6 1458 500 170 49 131 chr3 114488583 114488705 -45111078 - MT2B LTR ERVL -309 292 181 6 1458 254 79 26 0 chr3 114488715 114488753 -45111030 - RMER6D LTR ERVK -681 39 1 6 1458 45 62 0 0 chr3 114489163 114489243 -45110540 + AT_rich Low_complexity Low_complexity 1 80 0 6 1458 23 0 0 0 chr3 114489615 114489638 -45110145 + AT_rich Low_complexity Low_complexity 1 23 0 6 1458 280 349 147 45 chr3 114490875 114491073 -45108710 - MLT-int LTR MaLR -1505 230 13 6 1458 388 286 10 30 chr3 114491638 114491739 -45108044 + RSINE1 SINE B4 23 121 -44 7 1458 30 45 0 0 chr3 114493678 114493722 -45106061 + AT_rich Low_complexity Low_complexity 1 44 0 7 1458 21 0 0 0 chr3 114493961 114493982 -45105801 + AT_rich Low_complexity Low_complexity 1 21 0 7 1458 23 0 0 0 chr3 114494492 114494515 -45105268 + AT_rich Low_complexity Low_complexity 1 23 0 7 1458 2594 222 28 26 chr3 114494524 114495101 -45104682 - RLTR20A2 LTR ERVK 0 578 1 7 1458 1205 171 22 4 chr3 114495396 114495625 -45104158 + Lx LINE L1 6422 6654 0 7 1458 247 296 132 111 chr3 114495743 114495933 -45103850 + LTR41 LTR ERVL 121 314 -454 7 1458 584 285 25 15 chr3 114496036 114496239 -45103544 + Lx2B LINE L1 6783 6987 -13 7 1458 273 119 0 0 chr3 114496239 114496281 -45103502 + (CAT)n Simple_repeat Simple_repeat 3 44 0 7 1458 305 336 26 17 chr3 114496285 114496400 -45103383 + LTR41 LTR ERVL 532 647 -121 7 1458 21 0 0 0 chr3 114496741 114496762 -45103021 + AT_rich Low_complexity Low_complexity 1 21 0 7 1458 297 0 0 0 chr3 114497414 114497447 -45102336 + (TG)n Simple_repeat Simple_repeat 2 34 0 7 1458 22 0 0 0 chr3 114497847 114497869 -45101914 + AT_rich Low_complexity Low_complexity 1 22 0 7 1458 200 194 0 0 chr3 114497869 114497905 -45101878 + CT-rich Low_complexity Low_complexity 1 36 0 7 1458 495 0 0 0 chr3 114497911 114497966 -45101817 + (TG)n Simple_repeat Simple_repeat 2 56 0 7 1458 227 224 43 71 chr3 114498229 114498308 -45101475 + MIRb SINE MIR 180 256 -6 7 1458 244 269 15 51 chr3 114498484 114498621 -45101162 + (TATATG)n Simple_repeat Simple_repeat 1 132 0 7 1458 589 380 34 26 chr3 114498693 114498880 -45100903 - Lx8 LINE L1 -134 7339 7151 7 1458 2808 185 35 58 chr3 114498880 114499505 -45100278 - RMER19C LTR ERVK 0 611 1 7 1458 589 380 34 26 chr3 114499505 114499733 -45100050 - Lx8 LINE L1 -323 7150 6921 7 1458 809 38 9 0 chr3 114499867 114499972 -45099811 + (TTC)n Simple_repeat Simple_repeat 3 108 0 7 1458 489 76 0 0 chr3 114500000 114500066 -45099717 + (TCC)n Simple_repeat Simple_repeat 3 68 0 1 1458 576 0 0 0 chr3 114500066 114500130 -45099653 + (TC)n Simple_repeat Simple_repeat 1 64 0 2 1458 255 349 113 8 chr3 114500372 114500505 -45099278 + B4A SINE B4 140 286 -6 3 1458 282 125 0 0 chr3 114500637 114500685 -45099098 + (GA)n Simple_repeat Simple_repeat 1 48 0 4 1458 721 279 44 10 chr3 114501590 114501796 -45097987 - B3 SINE B2 -3 213 1 5 1458 355 306 119 19 chr3 114502908 114503068 -45096715 + Lx8 LINE L1 7045 7220 -253 6 1458 653 306 77 5 chr3 114503809 114504016 -45095767 - ORR1D2 LTR MaLR 0 370 149 7 1458 1499 244 37 19 chr3 114504016 114504510 -45095273 + Lx4B LINE L1 6484 6985 -15 8 1458 456 314 16 14 chr3 114504535 114504709 -45095074 - ORR1D2 LTR MaLR -191 187 3 7 1458 366 273 50 111 chr3 114504709 114504889 -45094894 + B3A SINE B2 29 197 -1 9 1458 790 220 7 74 chr3 114505016 114505286 -45094497 + Lx7 LINE L1 7445 7696 0 1 1458 5972 111 20 8 chr3 114505401 114506303 -45093480 - Lx3A LINE L1 -6 6975 6063 1 1458 10211 83 25 2 chr3 114506306 114507775 -45092008 - L1_Mur1 LINE L1 -329 5557 4056 1 1458 21 57 0 0 chr3 114507921 114507956 -45091827 + AT_rich Low_complexity Low_complexity 1 35 0 1 1458 402 21 0 0 chr3 114508092 114508139 -45091644 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 1458 1209 114 0 0 chr3 114508399 114508700 -45091083 + (CA)n Simple_repeat Simple_repeat 1 301 0 1 1458 597 141 0 0 chr3 114508700 114508799 -45090984 + (CATATA)n Simple_repeat Simple_repeat 5 103 0 1 1458 690 219 0 49 chr3 114508799 114508943 -45090840 - B1_Mus2 SINE Alu -10 137 1 1 1458 183 338 50 38 chr3 114508970 114509050 -45090733 - L4 LINE RTE -543 1486 1406 1 1458 24 0 0 0 chr3 114509237 114509261 -45090522 + AT_rich Low_complexity Low_complexity 1 24 0 1 1458 180 0 0 0 chr3 114509525 114509545 -45090238 + (CAAAT)n Simple_repeat Simple_repeat 4 23 0 2 1458 705 34 0 0 chr3 114510435 114510523 -45089260 + (CTAAA)n Simple_repeat Simple_repeat 3 90 0 2 1458 210 45 68 0 chr3 114510583 114510627 -45089156 + (CAAAAA)n Simple_repeat Simple_repeat 5 51 0 2 1458 506 276 125 51 chr3 114510728 114510984 -45088799 + LTR73 LTR ERV1 30 304 -268 2 1458 2144 157 190 51 chr3 114511257 114511863 -45087920 - RMER6C LTR ERVK 0 690 1 2 1458 1595 37 0 0 chr3 114511947 114512134 -45087649 - B2_Mm1a SINE B2 -5 188 2 2 1458 758 256 70 0 chr3 114512640 114512855 -45086928 - Lx6 LINE L1 -4 7456 7227 2 1458 1025 84 0 0 chr3 114512955 114513097 -45086686 - B1_Mus2 SINE Alu 0 147 6 2 1458 576 261 10 42 chr3 114513097 114513145 -45086638 - ID_B1 SINE B4 0 222 39 2 1458 908 50 21 7 chr3 114513178 114513318 -45086465 + (TA)n Simple_repeat Simple_repeat 2 143 0 2 1458 1188 316 59 11 chr3 114513319 114513780 -45086003 + RMER5 LTR ERV1 50 532 -2 3 1458 285 89 0 0 chr3 114513832 114513877 -45085906 + (CA)n Simple_repeat Simple_repeat 2 46 0 3 1458 420 20 0 0 chr3 114513877 114513925 -45085858 + (GA)n Simple_repeat Simple_repeat 2 50 0 3 1458 25 65 0 0 chr3 114513987 114514033 -45085750 + AT_rich Low_complexity Low_complexity 1 46 0 3 1458 312 287 74 0 chr3 114514432 114514540 -45085243 + ID_B1 SINE B4 107 222 -2 3 1458 414 0 0 0 chr3 114514822 114514868 -45084915 + (TG)n Simple_repeat Simple_repeat 1 46 0 3 1458 429 205 119 52 chr3 114515871 114516005 -45083778 - RMER19C LTR ERVK 0 611 469 3 1458 3161 178 31 2 chr3 114516005 114516589 -45083194 + Lx3C LINE L1 5869 6469 -507 3 1458 240 330 88 35 chr3 114516723 114516836 -45082947 - ID_B1 SINE B4 -100 124 6 3 1458 277 93 0 0 chr3 114517037 114517080 -45082703 + L1Md_F2 LINE L1 6526 6568 -14 3 1458 2838 178 74 45 chr3 114517134 114517739 -45082044 + RLTR25B LTR ERVK 1 623 -405 4 1458 3152 229 35 19 chr3 114517779 114518417 -45081366 - Lx6 LINE L1 -660 6390 5703 4 1458 342 45 0 0 chr3 114518417 114518461 -45081322 + (TTTG)n Simple_repeat Simple_repeat 2 45 0 4 1458 3152 224 22 16 chr3 114518461 114518905 -45080878 - Lx6 LINE L1 -178 5702 5256 4 1458 3621 132 21 70 chr3 114518905 114519694 -45080089 - RMER17A LTR ERVK 0 751 1 4 1458 3152 224 22 16 chr3 114519694 114519794 -45079989 - Lx6 LINE L1 -625 5255 5151 4 1458 1999 238 176 5 chr3 114519778 114520353 -45079430 + Lx6 LINE L1 6762 7434 -26 4 1458 1079 61 14 0 chr3 114522270 114522417 -45077366 + (GAAA)n Simple_repeat Simple_repeat 2 150 0 4 1458 561 68 0 0 chr3 114522421 114522495 -45077288 + (GGGA)n Simple_repeat Simple_repeat 1 74 0 4 1458 2296 139 3 5 chr3 114522496 114522878 -45076905 + Lx LINE L1 6272 6652 -2 4 1458 351 60 0 0 chr3 114522879 114522929 -45076854 + (CAGA)n Simple_repeat Simple_repeat 3 52 0 4 1458 2005 287 60 37 chr3 114525131 114526246 -45073537 - RMER1B Other Other -25 1041 1 4 1458 1570 256 62 89 chr3 114526280 114526783 -45073000 - RMER1B Other Other -533 533 45 5 1458 186 189 0 0 chr3 114528044 114528081 -45071702 + GA-rich Low_complexity Low_complexity 1 37 0 5 1458 279 0 0 0 chr3 114528380 114528411 -45071372 + (TA)n Simple_repeat Simple_repeat 2 32 0 5 1458 230 32 0 31 chr3 114529295 114529327 -45070456 - U2 snRNA snRNA -157 31 1 5 1458 218 293 0 42 chr3 114529384 114529401 -45070382 + polypyrimidine Low_complexity Low_complexity 80 94 0 5 1458 207 69 0 0 chr3 114529401 114529430 -45070353 + (TCTCTG)n Simple_repeat Simple_repeat 2 30 0 5 1458 218 293 0 42 chr3 114529430 114529508 -45070275 + CT-rich Low_complexity Low_complexity 4 79 0 5 1458 505 342 76 14 chr3 114529729 114530150 -45069633 - L1MA4A LINE L1 -373 5930 5484 5 1458 255 382 0 0 chr3 114532115 114532183 -45067600 + ID4 SINE ID 1 68 -15 5 1458 527 43 14 0 chr3 114532383 114532453 -45067330 + (TC)n Simple_repeat Simple_repeat 2 72 0 5 1458 1094 78 0 21 chr3 114532453 114532598 -45067185 - B1_Mus1 SINE Alu -5 143 2 6 1458 499 311 97 26 chr3 114532687 114532882 -45066901 + Lx5 LINE L1 6758 6966 -84 6 1458 399 173 35 47 chr3 114532887 114532972 -45066811 - RLTR31_Mm LTR ERVK 0 561 478 6 1458 27 49 0 0 chr3 114533097 114533138 -45066645 + AT_rich Low_complexity Low_complexity 1 41 0 6 1458 349 273 22 28 chr3 114533947 114534128 -45065655 + (TA)n Simple_repeat Simple_repeat 1 180 0 6 1458 24 0 0 0 chr3 114534929 114534953 -45064830 + AT_rich Low_complexity Low_complexity 1 24 0 6 1458 300 296 139 9 chr3 114535187 114535300 -45064483 + Lx5 LINE L1 6646 6760 -290 6 1458 4650 113 16 36 chr3 114536061 114536885 -45062898 - RMER17D2 LTR ERVK 0 809 3 6 1458 8077 54 0 0 chr3 114538121 114539223 -45060560 - L1Md_F2 LINE L1 -14 6568 5467 6 1458 285 71 0 0 chr3 114539221 114539263 -45060520 + L1Md_F2 LINE L1 5451 5492 -391 6 1458 268 57 0 0 chr3 114540059 114540094 -45059689 - U2 snRNA snRNA -152 36 2 6 1458 43 0 0 0 chr3 114540307 114540350 -45059433 + AT_rich Low_complexity Low_complexity 1 43 0 6 1458 1370 181 41 9 chr3 114540415 114540732 -45059051 + Lx7 LINE L1 5122 5448 -432 7 1458 349 262 11 154 chr3 114540752 114540937 -45058846 + Lx7 LINE L1 5738 5900 -1796 7 1458 5551 117 9 16 chr3 114540965 114541825 -45057958 - Lx LINE L1 0 6654 5801 7 1458 9051 160 11 6 chr3 114541826 114543421 -45056362 - Lx LINE L1 -190 5693 4092 7 1458 350 283 92 35 chr3 114543432 114543659 -45056124 + Lx7 LINE L1 5913 6152 -1544 7 1458 1513 44 5 15 chr3 114543659 114543865 -45055918 - L1Md_F3 LINE L1 0 6584 6381 7 1458 7461 45 24 5 chr3 114543865 114545006 -45054777 - L1Md_F2 LINE L1 -1 6581 5408 7 1458 237 206 0 45 chr3 114544973 114545022 -45054761 + Lx7 LINE L1 6126 6171 -1525 7 1458 627 99 0 0 chr3 114545022 114545123 -45054660 + (TCTCTG)n Simple_repeat Simple_repeat 2 102 0 7 1458 237 206 0 45 chr3 114545123 114545139 -45054644 + Lx7 LINE L1 6172 6187 -1509 7 1458 410 231 8 0 chr3 114545139 114545256 -45054527 + (TA)n Simple_repeat Simple_repeat 2 119 0 7 1458 29 28 0 0 chr3 114545457 114545493 -45054290 + AT_rich Low_complexity Low_complexity 1 36 0 7 1458 234 176 0 0 chr3 114545827 114545878 -45053905 + (TG)n Simple_repeat Simple_repeat 2 52 0 7 1458 382 318 87 8 chr3 114546010 114546137 -45053646 + MTE2a LTR MaLR 1 137 -242 7 1458 241 349 76 49 chr3 114546137 114546194 -45053589 + MT2A LTR ERVL 1 189 -344 7 1458 495 178 0 0 chr3 114548531 114548632 -45051151 + (TG)n Simple_repeat Simple_repeat 1 101 0 8 1458 2766 114 22 24 chr3 114548715 114549174 -45050609 - L1_Mm LINE L1 -294 5589 5132 8 1458 1534 93 28 0 chr3 114549202 114549418 -45050365 - L1_Mus3 LINE L1 -416 6222 6001 8 1458 4121 163 3 17 chr3 114549403 114550175 -45049608 - L1_Mm LINE L1 -484 5399 4639 8 1458 637 126 0 0 chr3 114550174 114550269 -45049514 + L1_Mm LINE L1 4547 4641 -1242 8 1458 1469 202 79 21 chr3 114550347 114550727 -45049056 - MYSERV6-int LTR ERVK 0 8959 8558 8 1458 1578 201 119 17 chr3 114550793 114551270 -45048513 - MYSERV-int LTR ERVK -721 5829 5304 8 1458 430 333 44 17 chr3 114551270 114551450 -45048333 - RMER4A LTR ERVK -27 439 255 8 1458 710 309 47 76 chr3 114551450 114551595 -45048188 - MYSERV-int LTR ERVK -1416 5134 5000 8 1458 4402 42 0 0 chr3 114551595 114552124 -45047659 - L1Md_T LINE L1 0 6582 6054 8 1458 710 271 68 98 chr3 114552124 114552419 -45047364 - MYSERV-int LTR ERVK -1551 4999 4843 8 1458 1317 285 55 1 chr3 114552459 114552972 -45046811 - MYSERV6-int LTR ERVK -4419 4540 4028 8 182 28882 28 1 6 chr3 114553415 114559596 -45040187 - L1Md_T LINE L1 -3 6579 439 8 1459 511 211 27 47 chr3 114560217 114560366 -45039417 - RLTR15 LTR ERVK -213 146 1 9 1459 607 198 9 0 chr3 114560449 114560555 -45039228 + MTD LTR MaLR 92 198 -221 9 1459 620 127 9 0 chr3 114562483 114562593 -45037190 + (TAGA)n Simple_repeat Simple_repeat 3 113 0 9 1459 405 251 114 49 chr3 114562658 114562990 -45036793 - L1MEg LINE L1 -5115 1085 769 9 1459 28 79 0 0 chr3 114564525 114564588 -45035195 + AT_rich Low_complexity Low_complexity 1 63 0 9 1459 236 375 29 0 chr3 114565451 114565555 -45034228 - PB1D10 SINE Alu -8 109 3 9 1459 498 355 48 0 chr3 114565956 114566122 -45033661 + B3 SINE B2 1 174 -42 9 1459 1731 123 30 240 chr3 114566513 114567114 -45032669 + IAPLTR2_Mm LTR ERVK 1 475 0 9 1459 293 96 77 64 chr3 114567116 114567194 -45032589 + MMERVK10C-int LTR ERVK 3 81 -1906 9 1459 276 114 0 0 chr3 114567206 114567250 -45032533 + MMERVK10C-int LTR ERVK 13 56 -1931 9 1459 463 186 19 38 chr3 114567251 114567357 -45032426 + MMERVK10C-int LTR ERVK 20 123 -6358 9 1459 227 267 0 0 chr3 114567357 114567402 -45032381 + RLTR27 LTR ERVK 231 275 -34 9 1459 832 97 0 9 chr3 114567402 114567517 -45032266 + MMERVK10C-int LTR ERVK 145 258 -7323 9 1459 255 227 0 0 chr3 114567520 114567564 -45032219 + RLTR27 LTR ERVK 232 275 -34 9 1459 832 97 0 9 chr3 114567564 114567679 -45032104 + MMERVK10C-int LTR ERVK 145 258 -7323 1 1459 227 273 0 0 chr3 114567682 114567726 -45032057 + RLTR27 LTR ERVK 232 275 -34 9 1459 237 327 0 0 chr3 114567752 114567807 -45031976 + RLTR27 LTR ERVK 221 275 -34 9 1459 3497 63 1 16 chr3 114567807 114568382 -45031401 + IAPEz-int LTR ERVK 168 659 -5822 1 1459 2173 72 0 0 chr3 114568385 114568663 -45031120 + IAPEz-int LTR ERVK 1359 1636 -4845 1 1459 6231 32 4 12 chr3 114568662 114569412 -45030371 + IAPEz-int LTR ERVK 5736 6479 -2 1 1459 1701 106 52 260 chr3 114569414 114570014 -45029769 + IAPLTR2_Mm LTR ERVK 1 475 0 1 1459 517 243 167 0 chr3 114570680 114570905 -45028878 + L1_Mur2 LINE L1 3316 3595 -2285 1 1459 489 84 0 0 chr3 114570933 114571004 -45028779 + (GGA)n Simple_repeat Simple_repeat 3 73 0 1 1459 1803 115 16 32 chr3 114571045 114571359 -45028424 - BGLII_B LTR ERVK -132 309 1 1 1459 698 157 102 0 chr3 114571359 114571525 -45028258 - MYSERV16_I-int LTR ERVK 0 2326 2144 1 1459 198 0 0 0 chr3 114571534 114571556 -45028227 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 1 1459 292 324 102 42 chr3 114571998 114572153 -45027630 + MIRm SINE MIR 1 158 -50 1 1459 882 299 32 22 chr3 114572222 114572499 -45027284 + Lx7 LINE L1 6389 6668 -1028 1 1459 543 275 19 12 chr3 114572506 114572668 -45027115 + Lx7 LINE L1 7160 7322 -374 1 1459 495 0 0 0 chr3 114572671 114572726 -45027057 + (TC)n Simple_repeat Simple_repeat 2 56 0 1 1459 29 60 0 0 chr3 114572854 114572904 -45026879 + AT_rich Low_complexity Low_complexity 1 50 0 1 1459 1407 330 62 14 chr3 114572983 114573614 -45026169 + Lx8 LINE L1 6577 7237 -236 1 1459 238 204 20 0 chr3 114574172 114574221 -45025562 + (TG)n Simple_repeat Simple_repeat 1 50 0 1 1459 759 83 0 0 chr3 114574752 114574873 -45024910 + (TCTTG)n Simple_repeat Simple_repeat 2 122 0 1 1459 4359 92 29 17 chr3 114574879 114575540 -45024243 - L1_Mus3 LINE L1 -13 6625 5957 1 1459 744 0 31 0 chr3 114575600 114575696 -45024087 + (TCTA)n Simple_repeat Simple_repeat 2 100 0 1 1459 501 328 23 0 chr3 114575844 114576018 -45023765 + B3A SINE B2 3 180 -18 1 1459 359 127 0 16 chr3 114576031 114576095 -45023688 + (TAA)n Simple_repeat Simple_repeat 2 64 0 1 1459 1193 194 80 40 chr3 114576314 114576456 -45023327 - RLTR22_Mur LTR ERVK -1536 312 154 1 1459 435 38 0 0 chr3 114576456 114576509 -45023274 + (TATG)n Simple_repeat Simple_repeat 3 55 0 1 1459 1193 194 80 40 chr3 114576509 114576666 -45023117 - RLTR22_Mur LTR ERVK -1695 153 1 1 1459 313 288 73 65 chr3 114576678 114576953 -45022830 - L1_Rod LINE L1 -530 5350 5056 1 1459 257 0 30 0 chr3 114577021 114577054 -45022729 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 1 1459 195 94 0 0 chr3 114577414 114577426 -45022357 + (CA)n Simple_repeat Simple_repeat 2 13 0 1 1459 189 0 0 0 chr3 114577426 114577447 -45022336 + (TC)n Simple_repeat Simple_repeat 2 22 0 1 1459 195 94 0 0 chr3 114577447 114577466 -45022317 + (CA)n Simple_repeat Simple_repeat 2 20 0 1 1459 2063 100 65 184 chr3 114577522 114578061 -45021722 - IAPLTR2_Mm LTR ERVK 0 475 1 1 1459 21 36 0 0 chr3 114578565 114578593 -45021190 + AT_rich Low_complexity Low_complexity 1 28 0 1 1459 236 320 16 8 chr3 114578877 114579003 -45020780 + Lx8 LINE L1 5753 5879 -1594 1 1459 1247 320 116 34 chr3 114579072 114579190 -45020593 + Lx8 LINE L1 6034 6166 -1307 1 1459 219 65 65 0 chr3 114579190 114579236 -45020547 + (TA)n Simple_repeat Simple_repeat 2 50 0 1 1459 1247 320 116 34 chr3 114579236 114579796 -45019987 + Lx8 LINE L1 6167 6767 -706 1 1459 613 257 70 31 chr3 114579830 114580055 -45019728 - RMER12 LTR ERVK 0 1322 1134 1 1459 4550 146 28 26 chr3 114580075 114580118 -45019665 - RMER12 LTR ERVK -468 854 816 1 1459 336 48 0 0 chr3 114580118 114580160 -45019623 + (TCTA)n Simple_repeat Simple_repeat 3 44 0 1 1459 4550 146 28 26 chr3 114580160 114580221 -45019562 - RMER12 LTR ERVK -507 815 767 1 1459 3403 30 2 2 chr3 114580221 114580617 -45019166 - MTA_Mm LTR MaLR 0 396 1 1 1459 4550 146 28 26 chr3 114580617 114581343 -45018440 - RMER12 LTR ERVK -556 766 22 1 1459 2808 116 12 9 chr3 114581343 114581768 -45018015 + RLTR22_Mus LTR ERVK 1 426 -1382 1 1459 3623 78 88 70 chr3 114581762 114582407 -45017376 + RLTR22_Mur LTR ERVK 556 1212 -636 1 1459 3687 40 2 0 chr3 114582408 114582859 -45016924 + L1Md_F2 LINE L1 5135 5586 -297 1 1459 8325 34 2 1 chr3 114582859 114583851 -45015932 + L1Md_F2 LINE L1 5587 6579 -3 1 1459 3839 114 35 52 chr3 114583866 114584523 -45015260 + RLTR22_Mur LTR ERVK 1203 1848 0 1 1459 1432 102 18 4 chr3 114584600 114584826 -45014957 - L1_Mus3 LINE L1 0 6638 6410 1 1459 1859 84 0 16 chr3 114584827 114585082 -45014701 + L1_Mus3 LINE L1 5961 6211 -427 1 1459 507 324 75 47 chr3 114585166 114585355 -45014428 + Lx8 LINE L1 7073 7268 -205 1 1459 868 141 205 5 chr3 114585355 114585540 -45014243 + URR1A DNA MER1_type 5 226 0 1 1459 507 324 75 47 chr3 114585540 114585564 -45014219 + Lx8 LINE L1 7269 7292 -181 1 1459 4219 277 88 34 chr3 114587613 114589398 -45010385 + Lx9 LINE L1 5654 7644 0 1 1459 219 169 42 0 chr3 114589829 114589900 -45009883 + (TA)n Simple_repeat Simple_repeat 2 75 0 1 1459 21 36 0 0 chr3 114589906 114589934 -45009849 + AT_rich Low_complexity Low_complexity 1 28 0 1 1459 240 158 0 0 chr3 114590237 114590294 -45009489 + A-rich Low_complexity Low_complexity 1 57 0 1 1459 322 335 109 37 chr3 114590469 114590953 -45008830 + L1MEc LINE L1 782 1300 -5100 1 1459 364 305 169 19 chr3 114591042 114591185 -45008598 + B3 SINE B2 2 165 -51 1 1459 294 29 0 0 chr3 114591185 114591220 -45008563 + (CA)n Simple_repeat Simple_repeat 2 36 0 1 1459 230 349 0 0 chr3 114591291 114591377 -45008406 + L1MEc LINE L1 1714 1799 -4616 1 1459 273 270 76 70 chr3 114591802 114591950 -45007833 - L1M5 LINE L1 -2550 3596 3452 1 1459 2536 101 8 5 chr3 114591950 114592327 -45007456 - L1_Mus3 LINE L1 -14 6624 6247 1 1459 273 270 76 70 chr3 114592327 114592493 -45007290 - L1M5 LINE L1 -2695 3451 3280 1 1459 23 54 0 0 chr3 114592493 114592530 -45007253 + AT_rich Low_complexity Low_complexity 1 37 0 1 1459 783 233 37 53 chr3 114592623 114592813 -45006970 - B3 SINE B2 -6 210 24 1 1459 300 342 58 0 chr3 114592884 114593004 -45006779 - Lx8 LINE L1 -148 7325 7199 1 1459 331 371 73 39 chr3 114593859 114594145 -45005638 - L1M5 LINE L1 -3381 2765 2470 1 1459 404 99 14 0 chr3 114594545 114594616 -45005167 + (CA)n Simple_repeat Simple_repeat 1 72 0 1 1459 21 36 0 0 chr3 114594899 114594927 -45004856 + AT_rich Low_complexity Low_complexity 1 28 0 1 1459 37 39 0 0 chr3 114595221 114595272 -45004511 + AT_rich Low_complexity Low_complexity 1 51 0 1 1459 348 35 52 0 chr3 114595311 114595369 -45004414 + (TA)n Simple_repeat Simple_repeat 2 62 0 1 1459 925 248 30 0 chr3 114596088 114596318 -45003465 - Lx6 LINE L1 -4 7456 7220 1 1459 2301 221 55 11 chr3 114596313 114597134 -45002649 - Lx6 LINE L1 -1166 6294 5415 1 1459 1961 78 0 0 chr3 114597776 114598034 -45001749 - L1_Mus2 LINE L1 -1 6565 6308 1 1459 1379 71 6 0 chr3 114598034 114598217 -45001566 + L1_Mus2 LINE L1 5745 5928 -638 1 1459 630 58 0 0 chr3 114598391 114598478 -45001305 + (TG)n Simple_repeat Simple_repeat 2 88 0 1 1459 2432 229 34 5 chr3 114599023 114599622 -45000161 + Lx2B LINE L1 6366 7053 -5 1 1459 698 321 30 15 chr3 114601005 114601410 -44998373 + L1MA4 LINE L1 5517 5927 -373 1 1459 3071 111 41 4 chr3 114601596 114602059 -44997724 - Lx3A LINE L1 -16 6965 6486 1 1459 240 306 34 51 chr3 114602060 114602177 -44997606 + RSINE1 SINE B4 51 165 0 1 1459 26 30 0 0 chr3 114602289 114602322 -44997461 + AT_rich Low_complexity Low_complexity 1 33 0 1 1459 192 293 12 96 chr3 114602793 114602876 -44996907 - L2a LINE L2 0 3426 3351 1 1459 180 97 0 0 chr3 114603146 114603177 -44996606 + (A)n Simple_repeat Simple_repeat 1 31 0 1 1459 24 77 0 0 chr3 114603585 114603637 -44996146 + AT_rich Low_complexity Low_complexity 1 52 0 1 1459 2213 114 0 51 chr3 114605454 114605565 -44994218 - Lx LINE L1 -7 6647 6547 1 1459 3277 39 15 0 chr3 114605565 114605955 -44993828 + MTA_Mm LTR MaLR 1 396 0 1 1459 2213 114 0 51 chr3 114605955 114606213 -44993570 - Lx LINE L1 -108 6546 6297 1 1459 204 122 0 0 chr3 114606333 114606374 -44993409 + (CAAAAA)n Simple_repeat Simple_repeat 2 42 0 1 1459 216 182 0 0 chr3 114607232 114607276 -44992507 + (CTG)n Simple_repeat Simple_repeat 3 46 0 1 1459 609 152 0 0 chr3 114610080 114610185 -44989598 + (TG)n Simple_repeat Simple_repeat 2 106 0 1 1459 23 33 0 0 chr3 114610954 114610984 -44988799 + AT_rich Low_complexity Low_complexity 1 30 0 1 1459 385 351 73 44 chr3 114611801 114612075 -44987708 - B4A SINE B4 -6 286 5 1 1459 3047 125 0 19 chr3 114613006 114613480 -44986303 + Lx LINE L1 6184 6648 -6 1 1459 52 0 0 0 chr3 114613578 114613630 -44986153 + AT_rich Low_complexity Low_complexity 1 52 0 1 1459 557 311 47 47 chr3 114613630 114613863 -44985920 + B4A SINE B4 1 233 -59 1 1459 441 0 0 0 chr3 114614042 114614091 -44985692 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 1459 2607 175 69 28 chr3 114614153 114614589 -44985194 + RLTR20B2 LTR ERVK 3 463 -97 1 1459 360 0 0 0 chr3 114614589 114614629 -44985154 + (TG)n Simple_repeat Simple_repeat 2 41 0 1 1459 2607 175 69 28 chr3 114614629 114614728 -44985055 + RLTR20B2 LTR ERVK 464 559 -1 1 1459 291 178 22 22 chr3 114614920 114615012 -44984771 + (TTTA)n Simple_repeat Simple_repeat 1 92 0 1 1459 2322 84 3 3 chr3 114615012 114615334 -44984449 - Lx3A LINE L1 -2 6979 6658 1 1459 305 274 18 36 chr3 114616169 114616279 -44983504 + PB1D10 SINE Alu 1 108 -9 1 1459 225 94 0 0 chr3 114616500 114616532 -44983251 + (TTTTC)n Simple_repeat Simple_repeat 4 35 0 1 1459 587 335 72 34 chr3 114616904 114617167 -44982616 - B4A SINE B4 -6 286 14 1 1459 519 82 0 0 chr3 114618087 114618160 -44981623 + (TG)n Simple_repeat Simple_repeat 2 74 0 1 1459 5608 114 11 6 chr3 114618913 114619752 -44980031 + Lx LINE L1 5807 6649 -5 1 1459 386 343 67 7 chr3 114621068 114621203 -44978580 + RSINE1 SINE B4 10 152 -13 1 1459 309 51 0 0 chr3 114621612 114621651 -44978132 + (CA)n Simple_repeat Simple_repeat 1 39 0 1 1459 184 59 59 0 chr3 114622031 114622065 -44977718 + (CAAA)n Simple_repeat Simple_repeat 4 39 0 1 1459 477 293 127 30 chr3 114622148 114622345 -44977438 + B3 SINE B2 1 216 0 1 1459 656 321 70 33 chr3 114623094 114623500 -44976283 - MLT2B4 LTR ERVL -75 481 1 1 1459 227 219 77 64 chr3 114623781 114623859 -44975924 + B3A SINE B2 2 80 -118 1 1459 299 259 0 11 chr3 114623859 114623949 -44975834 + (TA)n Simple_repeat Simple_repeat 1 89 0 1 1459 184 359 39 0 chr3 114624394 114624472 -44975311 - L2a LINE L2 -26 3400 3320 1 1459 1730 179 71 76 chr3 114625115 114625509 -44974274 + ORR1B1 LTR MaLR 1 392 -2 1 1459 216 370 168 0 chr3 114625968 114626171 -44973612 - L2 LINE L2 -2804 615 379 1 1459 318 26 0 0 chr3 114626208 114626247 -44973536 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 1459 326 342 131 40 chr3 114627050 114627324 -44972459 + Lx8 LINE L1 6899 7197 -276 1 1459 324 115 45 22 chr3 114627338 114627427 -44972356 + (CAGA)n Simple_repeat Simple_repeat 2 92 0 1 1459 22 35 0 0 chr3 114627616 114627645 -44972138 + AT_rich Low_complexity Low_complexity 1 29 0 1 1459 27 29 0 0 chr3 114627790 114627824 -44971959 + AT_rich Low_complexity Low_complexity 1 34 0 2 1459 181 299 100 38 chr3 114628042 114628122 -44971661 + MIRm SINE MIR 89 173 -103 2 1459 743 220 198 0 chr3 114628457 114628634 -44971149 - B3 SINE B2 -4 212 1 2 1459 4856 77 6 0 chr3 114628915 114629548 -44970235 + L1_Mus1 LINE L1 5931 6567 0 2 1459 1333 326 63 19 chr3 114630517 114631187 -44968596 - Lx9 LINE L1 -145 7499 6801 2 1459 40 21 0 0 chr3 114631739 114631786 -44967997 + AT_rich Low_complexity Low_complexity 1 47 0 2 1459 23 101 0 0 chr3 114631938 114632017 -44967766 + AT_rich Low_complexity Low_complexity 1 79 0 2 1459 263 242 134 40 chr3 114632034 114632236 -44967547 - Lx9 LINE L1 -1 7643 7423 2 1459 22 35 0 0 chr3 114632399 114632428 -44967355 + AT_rich Low_complexity Low_complexity 1 29 0 2 1459 1077 209 23 0 chr3 114634423 114634643 -44965140 + URR1B DNA MER1_type 1 225 0 2 1459 384 351 29 22 chr3 114636100 114636237 -44963546 + RSINE1 SINE B4 3 140 -25 2 1459 192 40 0 0 chr3 114636239 114636264 -44963519 + (CA)n Simple_repeat Simple_repeat 2 26 0 2 1459 815 53 9 0 chr3 114636265 114636378 -44963405 + (TAGA)n Simple_repeat Simple_repeat 4 117 0 2 1459 450 0 0 0 chr3 114636432 114636482 -44963301 + (TAAA)n Simple_repeat Simple_repeat 2 51 0 2 1459 251 362 64 89 chr3 114636487 114636690 -44963093 + B3A SINE B2 1 198 0 2 1459 21 0 0 0 chr3 114636749 114636770 -44963013 + AT_rich Low_complexity Low_complexity 1 21 0 2 1459 1142 77 0 0 chr3 114636972 114637115 -44962668 + B1_Mus1 SINE Alu 1 143 -5 2 1459 525 332 73 5 chr3 114637689 114637895 -44961888 + Tigger5 DNA MER2_type 1 220 -2186 2 1459 295 292 39 62 chr3 114637896 114638024 -44961759 + Tigger5 DNA MER2_type 2282 2406 0 2 1459 198 374 22 11 chr3 114638489 114638581 -44961202 + MIRm SINE MIR 170 262 -14 2 1459 21 57 0 0 chr3 114638732 114638767 -44961016 + AT_rich Low_complexity Low_complexity 1 35 0 2 1459 1280 284 60 6 chr3 114639787 114640181 -44959602 + MTD LTR MaLR 5 405 -14 2 1459 970 254 37 18 chr3 114640876 114641149 -44958634 + Lx6 LINE L1 7182 7459 -1 2 1459 297 317 29 130 chr3 114644103 114644310 -44955473 + B2_Mm2 SINE B2 1 186 -9 2 1459 21 36 0 0 chr3 114644425 114644453 -44955330 + AT_rich Low_complexity Low_complexity 1 28 0 2 1459 260 164 15 0 chr3 114644463 114644530 -44955253 + (TA)n Simple_repeat Simple_repeat 1 68 0 2 1459 278 101 58 0 chr3 114644628 114644697 -44955086 + (TA)n Simple_repeat Simple_repeat 1 73 0 2 1459 1185 225 49 85 chr3 114645879 114646267 -44953516 + ORR1D1 LTR MaLR 1 374 0 2 1459 4229 154 23 14 chr3 114647203 114647938 -44951845 - Lx2 LINE L1 -1 6996 6255 2 1459 424 222 73 9 chr3 114647938 114648047 -44951736 + B3 SINE B2 101 216 0 2 1459 27 0 0 0 chr3 114648125 114648152 -44951631 + AT_rich Low_complexity Low_complexity 1 27 0 2 1459 261 57 0 0 chr3 114650307 114650342 -44949441 + (TCTG)n Simple_repeat Simple_repeat 1 35 0 2 1459 3640 147 21 18 chr3 114650930 114651595 -44948188 - Lx2B LINE L1 -693 6307 5641 2 1459 21 0 0 0 chr3 114651998 114652019 -44947764 + AT_rich Low_complexity Low_complexity 1 21 0 2 1459 531 151 0 0 chr3 114652567 114652660 -44947123 + (TTA)n Simple_repeat Simple_repeat 3 95 0 2 1459 1031 24 0 0 chr3 114652970 114653094 -44946689 + B1_Mm SINE Alu 19 142 -5 2 1459 495 0 0 0 chr3 114653102 114653157 -44946626 + (TAAA)n Simple_repeat Simple_repeat 2 56 0 2 1459 4408 158 53 14 chr3 114653375 114653666 -44946117 + RMER17A2 LTR ERVK 2 297 -609 2 1459 876 53 0 0 chr3 114653666 114653780 -44946003 + (TCTCC)n Simple_repeat Simple_repeat 3 116 0 2 1459 4408 158 53 14 chr3 114653780 114654348 -44945435 + RMER17A2 LTR ERVK 298 895 -11 2 1459 21 71 0 0 chr3 114655182 114655224 -44944559 + AT_rich Low_complexity Low_complexity 1 42 0 2 1459 420 371 24 5 chr3 114656110 114656321 -44943462 - MER58A DNA MER1_type -1 223 9 2 1459 247 307 108 6 chr3 114656343 114656510 -44943273 - Charlie5 DNA MER1_type -6 2618 2435 2 1459 757 314 9 9 chr3 114656531 114656743 -44943040 + B3 SINE B2 5 216 0 2 1459 408 77 0 0 chr3 114656883 114656948 -44942835 - L1Md_F2 LINE L1 -4 6578 6514 2 1459 189 0 0 0 chr3 114657776 114657797 -44941986 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 2 1459 22 35 0 0 chr3 114658543 114658572 -44941211 + AT_rich Low_complexity Low_complexity 1 29 0 2 1459 1878 107 80 16 chr3 114658919 114659233 -44940550 - L1Md_F2 LINE L1 -17 6565 6232 2 1459 8659 67 1 0 chr3 114659233 114660697 -44939086 + L1Md_F2 LINE L1 4751 6216 -366 2 1459 1105 79 0 0 chr3 114660999 114661139 -44938644 + B1_Mus2 SINE Alu 2 141 -6 2 1459 303 140 0 0 chr3 114661141 114661191 -44938592 + (TATG)n Simple_repeat Simple_repeat 3 52 0 2 1459 241 315 64 9 chr3 114662164 114662273 -44937510 - MLT2C1 LTR ERVL -216 181 67 2 1459 271 317 0 12 chr3 114663558 114663641 -44936142 + CT-rich Low_complexity Low_complexity 1 82 0 2 1459 223 204 19 0 chr3 114663756 114663810 -44935973 + (TCTA)n Simple_repeat Simple_repeat 2 56 0 2 1459 624 214 11 6 chr3 114663850 114664024 -44935759 + GA-rich Low_complexity Low_complexity 1 175 0 2 1459 229 302 0 0 chr3 114664026 114664089 -44935694 + (CAGGA)n Simple_repeat Simple_repeat 3 65 0 2 1459 329 119 0 43 chr3 114665086 114665156 -44934627 + (CA)n Simple_repeat Simple_repeat 2 68 0 2 1459 221 333 67 0 chr3 114665942 114666032 -44933751 + B4A SINE B4 71 166 -126 2 1459 637 245 7 7 chr3 114665961 114666101 -44933682 + B1_Mus2 SINE Alu 8 147 0 2 1459 338 271 14 0 chr3 114666143 114666213 -44933570 + RSINE1 SINE B4 12 82 -83 2 1459 665 246 73 5 chr3 114667270 114667462 -44932321 - B3 SINE B2 -11 205 1 2 1459 25 31 0 0 chr3 114667999 114668031 -44931752 + AT_rich Low_complexity Low_complexity 1 32 0 2 1459 237 251 73 36 chr3 114668049 114668159 -44931624 + MIR SINE MIR 60 161 -101 2 1459 244 96 58 0 chr3 114668716 114668768 -44931015 + A-rich Low_complexity Low_complexity 4 58 0 2 1459 202 224 0 0 chr3 114669361 114669410 -44930373 + T-rich Low_complexity Low_complexity 1 49 0 2 1459 6889 145 22 12 chr3 114669411 114670576 -44929207 - Lx2 LINE L1 -1 6996 5820 2 1459 191 341 35 23 chr3 114670957 114671044 -44928739 - L2a LINE L2 -1 3425 3338 2 1459 338 358 11 6 chr3 114671269 114671448 -44928335 + Lx8 LINE L1 7127 7310 -386 2 1459 394 106 47 0 chr3 114671460 114671545 -44928238 + (CAGAGA)n Simple_repeat Simple_repeat 2 90 0 2 1459 2210 50 4 0 chr3 114671643 114671922 -44927861 - Lx3C LINE L1 -1016 5960 5681 2 1459 2408 122 46 20 chr3 114671922 114672314 -44927469 + Lx3A LINE L1 6573 6974 -7 2 1459 1080 128 39 6 chr3 114672607 114672788 -44926995 - B2_Mm2 SINE B2 -7 188 2 2 1459 265 375 108 78 chr3 114673603 114673910 -44925873 + MLT1G3 LTR MaLR 16 331 -264 2 1459 548 296 14 7 chr3 114673917 114674063 -44925720 - B3A SINE B2 -50 148 2 2 1459 283 242 0 0 chr3 114676377 114676439 -44923344 - Lx9 LINE L1 -233 7411 7350 2 1459 453 235 169 5 chr3 114676444 114676510 -44923273 + Lx9 LINE L1 7411 7476 -168 2 1459 243 0 0 0 chr3 114676510 114676537 -44923246 + (CA)n Simple_repeat Simple_repeat 2 28 0 2 1459 453 235 169 5 chr3 114676537 114676559 -44923224 + Lx9 LINE L1 7477 7500 -144 2 1459 489 17 0 0 chr3 114676559 114676617 -44923166 + (TA)n Simple_repeat Simple_repeat 1 58 0 2 1459 453 235 169 5 chr3 114676617 114676728 -44923055 + Lx9 LINE L1 7501 7642 -2 2 1459 464 362 13 22 chr3 114676766 114676995 -44922788 + B4A SINE B4 43 269 -23 2 1459 425 283 44 0 chr3 114677805 114677918 -44921865 - RSINE1 SINE B4 -29 136 19 2 1459 40392 14 1 6 chr3 114679579 114685775 -44914008 - L1Md_A LINE L1 0 6582 423 2 1459 425 147 34 214 chr3 114686530 114686825 -44912958 - Lx9 LINE L1 -2 7642 7401 2 1459 972 223 71 5 chr3 114686823 114686962 -44912821 + Lx9 LINE L1 7176 7314 -330 2 1459 248 53 26 0 chr3 114686962 114687000 -44912783 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 2 1459 972 223 71 5 chr3 114687000 114687072 -44912711 + Lx9 LINE L1 7315 7399 -245 2 1460 303 224 71 0 chr3 114688338 114688436 -44911347 + Lx9 LINE L1 7538 7642 -2 2 1460 578 237 94 22 chr3 114688466 114688647 -44911136 - Lx9 LINE L1 -457 7187 6994 2 1460 749 243 198 72 chr3 114688631 114688703 -44911080 + Lx9 LINE L1 7160 7233 -411 2 1460 4198 168 130 46 chr3 114688703 114689656 -44910127 + RLTR13D4 LTR ERVK 1 1033 0 2 1460 749 243 198 72 chr3 114689656 114689938 -44909845 + Lx9 LINE L1 7234 7506 -138 2 1460 336 64 0 0 chr3 114689938 114689985 -44909798 + (TG)n Simple_repeat Simple_repeat 2 48 0 2 1460 749 243 198 72 chr3 114689985 114690059 -44909724 + Lx9 LINE L1 7507 7642 -2 2 1460 21 0 0 0 chr3 114691869 114691890 -44907893 + AT_rich Low_complexity Low_complexity 1 21 0 2 1460 1179 128 33 0 chr3 114692197 114692377 -44907406 + B2_Mm1t SINE B2 1 186 -7 2 1460 492 38 12 25 chr3 114692550 114692631 -44907152 + (TTTTG)n Simple_repeat Simple_repeat 1 80 0 2 1460 1048 89 0 0 chr3 114692631 114692766 -44907017 - B1_Mus1 SINE Alu -13 135 1 2 1460 2030 150 55 28 chr3 114693715 114694113 -44905670 - RLTR9E LTR ERVK 0 409 1 2 1460 355 279 163 34 chr3 114694228 114694406 -44905377 + B3 SINE B2 3 203 -13 2 1460 2801 162 7 2 chr3 114694681 114695145 -44904638 - Lx2B LINE L1 -10 6990 6525 2 1460 4391 78 15 57 chr3 114695190 114695475 -44904308 - L1_Mus3 LINE L1 -6 6632 6375 2 1460 225 0 0 0 chr3 114695475 114695500 -44904283 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 2 1460 4391 78 15 57 chr3 114695500 114695883 -44903900 - L1_Mus3 LINE L1 -264 6374 5992 2 1460 219 175 0 0 chr3 114696007 114696064 -44903719 + A-rich Low_complexity Low_complexity 1 57 0 2 1460 612 40 0 0 chr3 114696122 114696197 -44903586 + (GGGA)n Simple_repeat Simple_repeat 2 76 0 2 1460 1860 302 29 12 chr3 114696209 114696860 -44902923 - Lx7 LINE L1 -395 7301 6640 2 1460 21 0 0 0 chr3 114697387 114697408 -44902375 + AT_rich Low_complexity Low_complexity 1 21 0 2 1460 22 0 0 0 chr3 114697436 114697458 -44902325 + AT_rich Low_complexity Low_complexity 1 22 0 2 1460 185 253 103 62 chr3 114698294 114698391 -44901392 + MIRb SINE MIR 112 212 -56 2 1460 273 336 29 15 chr3 114698776 114698912 -44900871 + MIRc SINE MIR 102 239 -29 2 1460 414 220 0 18 chr3 114699955 114700066 -44899717 + Lx9 LINE L1 7489 7597 -47 2 1460 2998 282 68 40 chr3 114700146 114701284 -44898499 + Lx8 LINE L1 6301 7469 -4 2 1460 696 227 78 0 chr3 114701548 114701702 -44898081 + B3A SINE B2 1 166 -32 3 1460 357 24 0 0 chr3 114701702 114701744 -44898039 + (CA)n Simple_repeat Simple_repeat 1 42 0 3 1460 300 91 0 0 chr3 114702180 114702224 -44897559 + (TC)n Simple_repeat Simple_repeat 2 45 0 3 1460 243 309 41 0 chr3 114702297 114702394 -44897389 - L1M4b LINE L1 -664 6508 6408 3 1460 1435 297 54 43 chr3 114702405 114703390 -44896393 - L1M4b LINE L1 -415 6325 5303 3 1460 9163 111 36 7 chr3 114703405 114704878 -44894905 - Lx3A LINE L1 0 6981 5488 3 1460 663 329 81 48 chr3 114704872 114705765 -44894018 - L1M4b LINE L1 -1666 5334 4413 3 1460 270 309 63 60 chr3 114705794 114706145 -44893638 - L1M4b LINE L1 -3147 3853 3502 3 1460 344 315 81 27 chr3 114706231 114706453 -44893330 - L1M4b LINE L1 -5155 2179 1946 3 1460 187 185 121 69 chr3 114707247 114707305 -44892478 - L2c LINE L2 -183 3204 3144 3 1460 452 375 82 8 chr3 114707573 114707818 -44891965 + RMER15 LTR ERVL 299 561 -14 3 1460 5518 35 1 5 chr3 114708482 114709182 -44890601 - L1Md_F3 LINE L1 0 6584 5899 3 1460 461 279 19 0 chr3 114711897 114712001 -44887782 - ID_B1 SINE B4 -40 184 79 3 1460 245 51 0 25 chr3 114712320 114712360 -44887423 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 3 1460 3031 23 0 0 chr3 114712390 114712736 -44887047 + ORR1A0 LTR MaLR 1 346 0 3 1460 381 338 70 48 chr3 114713601 114713828 -44885955 - MLT1D LTR MaLR -268 237 6 3 1460 582 15 0 0 chr3 114713967 114714034 -44885749 + (TA)n Simple_repeat Simple_repeat 1 67 0 3 1460 400 269 9 69 chr3 114714757 114714873 -44884910 + B1F SINE Alu 41 149 0 3 1460 453 145 0 0 chr3 114714932 114715008 -44884775 + (GGAGA)n Simple_repeat Simple_repeat 2 77 0 3 1460 335 274 23 47 chr3 114715013 114715185 -44884598 + GA-rich Low_complexity Low_complexity 3 170 0 3 1460 525 92 0 0 chr3 114715509 114715585 -44884198 + (TG)n Simple_repeat Simple_repeat 2 77 0 3 1460 368 369 54 0 chr3 114715715 114715864 -44883919 - RSINE1 SINE B4 -6 159 3 3 1460 898 315 79 36 chr3 114716523 114716721 -44883062 - B4A SINE B4 0 292 82 3 1460 794 116 14 14 chr3 114716721 114716861 -44882922 - L1Md_F2 LINE L1 0 6582 6443 3 1460 898 315 79 36 chr3 114716861 114716942 -44882841 - B4A SINE B4 -211 81 1 3 1460 231 36 0 0 chr3 114717013 114717041 -44882742 + (TC)n Simple_repeat Simple_repeat 2 29 0 3 1460 319 377 16 47 chr3 114717338 114717466 -44882317 + RSINE1 SINE B4 21 144 -21 3 1460 2869 18 0 0 chr3 114717503 114717831 -44881952 - MERVL-int LTR ERVL -1297 4188 3861 3 1460 956 351 42 11 chr3 114717831 114718208 -44881575 - RCHARR1 DNA MER1_type -584 390 2 3 1460 219 188 0 0 chr3 114718295 114718343 -44881440 + (CA)n Simple_repeat Simple_repeat 1 48 0 3 1460 180 0 0 0 chr3 114718497 114718517 -44881266 + (TTA)n Simple_repeat Simple_repeat 2 21 0 3 1460 22 0 0 0 chr3 114718544 114718566 -44881217 + AT_rich Low_complexity Low_complexity 1 22 0 3 1460 3001 105 5 2 chr3 114718862 114719292 -44880491 + Lx LINE L1 6220 6650 -4 3 1460 724 136 32 0 chr3 114719747 114719872 -44879911 - L1Md_F2 LINE L1 -10 6572 6444 3 1460 1604 201 86 8 chr3 114719876 114720238 -44879545 - ORR1B1 LTR MaLR 0 394 5 3 1460 3538 131 50 0 chr3 114721750 114722331 -44877452 - Lx LINE L1 0 6654 6045 3 1460 476 288 16 8 chr3 114722818 114722944 -44876839 + RSINE1 SINE B4 4 130 -35 3 1460 1365 177 57 58 chr3 114723262 114723625 -44876158 - RMER12 LTR ERVK 0 1848 1512 3 1460 3699 14 123 0 chr3 114723655 114724094 -44875689 + MT2_Mm LTR ERVL 1 493 0 3 1460 40491 16 14 0 chr3 114724094 114729381 -44870402 + MERVL-int LTR ERVL 1 5360 -125 3 1460 392 167 46 35 chr3 114729381 114729468 -44870315 + ORR1A3-int LTR MaLR 553 640 -1323 3 1460 314 0 0 0 chr3 114729468 114729506 -44870277 + MERVL-int LTR ERVL 5448 5485 0 3 1460 3699 14 123 0 chr3 114729506 114729945 -44869838 + MT2_Mm LTR ERVL 1 493 0 3 1460 1741 195 87 81 chr3 114729953 114730461 -44869322 - RMER12 LTR ERVK -407 915 405 3 1460 221 378 61 34 chr3 114731208 114731436 -44868347 + MIR SINE MIR 23 268 0 3 1460 1471 74 115 9 chr3 114732053 114732271 -44867512 - L1_Mus2 LINE L1 0 6566 6326 3 1460 1386 94 0 5 chr3 114732786 114732979 -44866804 + B2_Mm2 SINE B2 1 192 -3 3 1460 425 357 67 91 chr3 114733773 114734134 -44865649 + MLT1F2 LTR MaLR 193 544 -16 3 1460 3204 299 65 123 chr3 114734183 114736001 -44863782 + Tigger1 DNA MER2_type 66 1778 -640 3 1460 1065 341 28 3 chr3 114736017 114736379 -44863404 + MTEa LTR MaLR 3 372 -7 3 1460 1027 101 116 23 chr3 114736397 114736569 -44863214 - B2_Mm2 SINE B2 -6 189 2 3 1460 333 68 0 0 chr3 114736612 114736656 -44863127 + (TAGG)n Simple_repeat Simple_repeat 3 46 0 3 1460 1095 84 19 11 chr3 114736667 114736933 -44862850 + (TAGA)n Simple_repeat Simple_repeat 1 268 0 3 1460 282 160 0 0 chr3 114736931 114736981 -44862802 + (CATG)n Simple_repeat Simple_repeat 2 51 0 3 1460 1604 310 44 12 chr3 114736992 114737566 -44862217 + Tigger1 DNA MER2_type 1827 2418 0 3 1460 321 309 50 8 chr3 114737870 114738016 -44861767 + MIRb SINE MIR 54 208 -54 3 1460 461 322 66 0 chr3 114738919 114739102 -44860681 - Lx8 LINE L1 -403 7070 6876 3 1460 393 22 0 0 chr3 114739158 114739204 -44860579 + (TA)n Simple_repeat Simple_repeat 1 46 0 3 1460 1097 163 37 23 chr3 114739965 114740179 -44859604 - Lx3C LINE L1 -1 6975 6759 3 1460 195 129 0 0 chr3 114740360 114740391 -44859392 + (CACCAT)n Simple_repeat Simple_repeat 6 36 0 3 1460 22 56 0 0 chr3 114740391 114740427 -44859356 + AT_rich Low_complexity Low_complexity 1 36 0 3 1460 1083 285 57 41 chr3 114740728 114740799 -44858984 - Lx8 LINE L1 -55 7418 7353 3 1460 203 0 0 36 chr3 114740799 114740827 -44858956 + (TTA)n Simple_repeat Simple_repeat 1 27 0 3 1460 1083 285 57 41 chr3 114740827 114741197 -44858586 - Lx8 LINE L1 -121 7352 6970 3 1460 454 356 71 27 chr3 114741906 114742131 -44857652 + B4 SINE B4 2 236 -56 3 1460 21 36 0 0 chr3 114742717 114742745 -44857038 + AT_rich Low_complexity Low_complexity 1 28 0 3 1460 326 272 19 0 chr3 114742896 114742999 -44856784 + Lx3B LINE L1 6862 6966 -7 3 1460 519 362 24 28 chr3 114743260 114743473 -44856310 + B4 SINE B4 8 219 -73 3 1460 261 0 0 0 chr3 114744448 114744477 -44855306 + (TG)n Simple_repeat Simple_repeat 1 29 0 3 1460 383 138 0 0 chr3 114744581 114744646 -44855137 + Lx2 LINE L1 6931 6995 -2 3 1460 1440 195 73 4 chr3 114744696 114744969 -44854814 - ORR1B2 LTR MaLR 0 367 76 3 1460 3734 196 25 17 chr3 114744969 114745743 -44854040 - Lx2B LINE L1 -18 6982 6203 3 1460 1266 180 14 35 chr3 114745745 114746033 -44853750 + Lx2B LINE L1 5902 6183 -817 3 1460 858 258 58 12 chr3 114746286 114746529 -44853254 - Lx6 LINE L1 0 7460 7207 3 1460 24 0 0 0 chr3 114746786 114746810 -44852973 + AT_rich Low_complexity Low_complexity 1 24 0 3 1460 21 0 0 0 chr3 114747267 114747288 -44852495 + AT_rich Low_complexity Low_complexity 1 21 0 3 1460 23 54 0 0 chr3 114748799 114748836 -44850947 + AT_rich Low_complexity Low_complexity 1 37 0 3 1460 347 170 20 20 chr3 114750843 114750945 -44848838 + (TA)n Simple_repeat Simple_repeat 2 103 0 3 1460 22 35 0 0 chr3 114751245 114751274 -44848509 + AT_rich Low_complexity Low_complexity 1 29 0 3 1460 198 0 0 0 chr3 114751386 114751408 -44848375 + (T)n Simple_repeat Simple_repeat 1 22 0 3 1460 1649 36 0 0 chr3 114751429 114751621 -44848162 - B2_Mm1a SINE B2 0 193 2 3 1460 481 321 40 18 chr3 114755372 114755594 -44844189 - L1MC2 LINE L1 -72 6272 6046 3 1460 1103 80 0 0 chr3 114755827 114755977 -44843806 + L1_Mus1 LINE L1 6418 6567 0 3 1460 513 84 0 0 chr3 114756314 114756385 -44843398 + (T)n Simple_repeat Simple_repeat 1 71 0 3 1460 1176 68 0 0 chr3 114756385 114756532 -44843251 - B1_Mus1 SINE Alu 0 148 2 3 1460 1548 310 40 16 chr3 114757122 114757741 -44842042 + Lx8 LINE L1 6419 7052 -421 3 1460 2875 121 0 5 chr3 114757754 114758187 -44841596 - L1_Mus4 LINE L1 -19 6617 6187 3 1460 718 71 10 39 chr3 114758187 114758289 -44841494 + L1_Mus4 LINE L1 6103 6201 -435 3 1460 46 74 0 0 chr3 114759286 114759381 -44840402 + AT_rich Low_complexity Low_complexity 1 95 0 3 1460 26 0 0 0 chr3 114759540 114759566 -44840217 + AT_rich Low_complexity Low_complexity 1 26 0 3 1460 20368 113 9 4 chr3 114759649 114763087 -44836696 - L1_Mus3 LINE L1 -12 6626 3172 3 1460 224 30 30 0 chr3 114763087 114763120 -44836663 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 3 1460 20368 121 10 5 chr3 114763120 114763586 -44836197 - L1_Mus3 LINE L1 -2712 3171 2700 3 1460 2258 189 139 4 chr3 114763574 114764090 -44835693 - L1VL2 LINE L1 -5656 679 94 3 1460 3169 107 30 9 chr3 114765266 114765730 -44834053 - Lx2 LINE L1 -20 6977 6504 3 1460 216 158 0 0 chr3 114766370 114766408 -44833375 + CT-rich Low_complexity Low_complexity 2 39 0 3 1460 385 371 14 14 chr3 114766570 114766712 -44833071 - RSINE1 SINE B4 -17 148 7 3 1460 194 327 53 82 chr3 114768357 114768527 -44831256 - MIRb SINE MIR -54 214 50 3 1460 609 382 0 0 chr3 114769912 114770111 -44829672 + B3 SINE B2 7 205 -11 3 1460 2893 153 122 31 chr3 114770590 114771528 -44828255 - RLTR13D1 LTR ERVK -59 964 4 3 1460 248 0 31 0 chr3 114773409 114773441 -44826342 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 3 1460 249 322 176 25 chr3 114773612 114773851 -44825932 + L3 LINE CR1 3978 4252 -237 3 1460 237 333 0 12 chr3 114774413 114774498 -44825285 - MIRb SINE MIR -20 248 165 3 1460 1838 224 39 50 chr3 114774509 114774973 -44824810 + LTR65 LTR ERV1 150 608 -61 3 1460 273 109 0 0 chr3 114776191 114776237 -44823546 + (TTCA)n Simple_repeat Simple_repeat 4 49 0 3 1460 1489 196 89 38 chr3 114776238 114776610 -44823173 - Lx4B LINE L1 -6 7052 6662 3 1460 206 118 0 0 chr3 114776610 114776644 -44823139 + (A)n Simple_repeat Simple_repeat 1 34 0 3 1460 261 318 67 11 chr3 114777808 114777897 -44821886 - L2 LINE L2 -538 2881 2788 3 1460 623 264 12 0 chr3 114778476 114778643 -44821140 - L2 LINE L2 -932 2487 2319 3 1460 391 329 108 50 chr3 114778643 114778920 -44820863 - L2 LINE L2 -1217 2202 1905 3 1460 1269 83 0 11 chr3 114778920 114779102 -44820681 + L1_Mus2 LINE L1 6387 6566 0 3 1460 391 329 108 50 chr3 114779102 114779185 -44820598 - L2 LINE L2 -1515 1904 1822 3 1460 304 270 13 13 chr3 114779203 114779278 -44820505 + ID4 SINE ID 9 83 0 3 1460 192 362 22 51 chr3 114779292 114779429 -44820354 - L2 LINE L2 -1626 1793 1661 3 1460 219 342 68 8 chr3 114779453 114779571 -44820212 + MER5A DNA MER1_type 39 163 -26 3 1460 668 12 12 0 chr3 114780335 114780416 -44819367 + (GA)n Simple_repeat Simple_repeat 2 83 0 3 1460 513 0 0 0 chr3 114782802 114782859 -44816924 + (TA)n Simple_repeat Simple_repeat 2 58 0 3 1460 198 0 0 0 chr3 114784257 114784279 -44815504 + (A)n Simple_repeat Simple_repeat 1 22 0 3 1460 501 17 0 0 chr3 114786753 114786811 -44812972 + (CA)n Simple_repeat Simple_repeat 1 58 0 4 1460 387 0 0 0 chr3 114786811 114786853 -44812930 + (GA)n Simple_repeat Simple_repeat 2 44 0 4 1460 6065 131 18 3 chr3 114789203 114790147 -44809636 + RMER17B LTR ERVK 1 958 0 4 1460 629 346 67 0 chr3 114792589 114792797 -44806986 + B4 SINE B4 21 242 -50 4 1460 570 268 121 125 chr3 114794130 114794586 -44805197 - RMER4A LTR ERVK -11 455 2 4 1460 26 0 0 0 chr3 114795139 114795165 -44804618 + AT_rich Low_complexity Low_complexity 1 26 0 4 1460 501 289 95 92 chr3 114795889 114796225 -44803558 - ORR1D1 LTR MaLR 0 374 38 4 1460 21 36 0 0 chr3 114797527 114797555 -44802228 + AT_rich Low_complexity Low_complexity 1 28 0 4 1460 1025 181 33 93 chr3 114797585 114797919 -44801864 - RLTRETN_Mm LTR ERVK -8 314 1 4 1460 419 255 27 47 chr3 114798253 114798401 -44801382 - MER5A1 DNA MER1_type -4 162 18 4 1460 339 44 0 0 chr3 114798906 114798951 -44800832 + (TG)n Simple_repeat Simple_repeat 2 46 0 4 1460 269 286 95 54 chr3 114801865 114802013 -44797770 - MIR SINE MIR 0 262 109 4 1460 672 277 32 93 chr3 114802118 114802429 -44797354 + B4A SINE B4 1 292 0 4 1460 195 244 0 0 chr3 114802504 114802582 -44797201 + (CA)n Simple_repeat Simple_repeat 1 78 0 4 1460 301 128 12 25 chr3 114805279 114805359 -44794424 + (TTTG)n Simple_repeat Simple_repeat 2 80 0 4 1460 662 342 118 0 chr3 114806053 114806357 -44793426 - MER2 DNA MER2_type -5 340 1 4 1460 355 221 42 14 chr3 114806586 114806728 -44793055 + (TAGA)n Simple_repeat Simple_repeat 1 146 0 4 1460 293 346 12 0 chr3 114806939 114807020 -44792763 - B1F SINE Alu -20 129 48 4 1460 246 105 0 0 chr3 114807031 114807069 -44792714 + (CA)n Simple_repeat Simple_repeat 2 39 0 4 1460 22 35 0 0 chr3 114808507 114808536 -44791247 + AT_rich Low_complexity Low_complexity 1 29 0 4 1460 212 86 29 0 chr3 114808552 114808587 -44791196 + (TG)n Simple_repeat Simple_repeat 2 37 0 4 1460 1389 45 3 3 chr3 114810481 114810835 -44788948 + (TCTA)n Simple_repeat Simple_repeat 1 353 0 4 1460 216 0 0 0 chr3 114810937 114810961 -44788822 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 4 1460 1366 212 125 64 chr3 114811502 114811926 -44787857 - RMER16 LTR ERVK -83 450 1 4 1460 352 262 0 0 chr3 114812006 114812086 -44787697 + L1M4 LINE L1 5018 5097 -1049 4 1460 370 306 166 31 chr3 114812278 114812507 -44787276 - RLTR40 LTR ERVK -243 574 315 4 1460 375 23 0 0 chr3 114812510 114812554 -44787229 + (TC)n Simple_repeat Simple_repeat 2 45 0 4 1460 255 298 60 0 chr3 114812575 114812659 -44787124 - RLTR40 LTR ERVK -710 107 19 4 1460 351 121 17 0 chr3 114814332 114814390 -44785393 - U2 snRNA snRNA -129 59 1 4 1460 22 0 0 0 chr3 114814453 114814475 -44785308 + AT_rich Low_complexity Low_complexity 1 22 0 4 1460 307 192 32 172 chr3 114814552 114814709 -44785074 - Lx9 LINE L1 -15 7629 7495 4 1460 258 242 0 0 chr3 114814728 114814794 -44784989 + (TA)n Simple_repeat Simple_repeat 1 66 0 4 1460 1546 246 48 48 chr3 114814794 114815290 -44784493 - Lx9 LINE L1 -127 7517 7022 4 1460 26 30 0 0 chr3 114815556 114815589 -44784194 + AT_rich Low_complexity Low_complexity 1 33 0 4 1460 5817 126 11 20 chr3 114815599 114816534 -44783249 - Lx3B LINE L1 -5 6968 6043 4 1460 1591 306 53 14 chr3 114816535 114817085 -44782698 - Lx9 LINE L1 -615 7029 6459 4 1460 31 0 0 0 chr3 114818062 114818093 -44781690 + AT_rich Low_complexity Low_complexity 1 31 0 4 1460 332 87 24 47 chr3 114818178 114818263 -44781520 + (TTTG)n Simple_repeat Simple_repeat 2 84 0 4 182 5567 197 52 22 chr3 114818272 114819417 -44780366 - Lx5 LINE L1 -19 7031 5852 4 1461 395 240 154 0 chr3 114819605 114819709 -44780074 + B1_Mur1 SINE Alu 3 122 -27 4 1461 387 0 0 0 chr3 114819727 114819770 -44780013 + (TA)n Simple_repeat Simple_repeat 1 43 0 4 1461 752 65 32 0 chr3 114821447 114821571 -44778212 + (TAGA)n Simple_repeat Simple_repeat 3 130 0 4 1461 4438 104 23 3 chr3 114822153 114822810 -44776973 - Lx3A LINE L1 -12 6969 6300 4 1461 1054 226 75 25 chr3 114823294 114823576 -44776207 + Lx6 LINE L1 7153 7448 -12 4 1461 288 389 97 0 chr3 114824768 114824912 -44774871 - RSINE1 SINE B4 0 165 8 4 1461 22 56 0 0 chr3 114826496 114826532 -44773251 + AT_rich Low_complexity Low_complexity 1 36 0 4 1461 186 115 38 19 chr3 114827377 114827430 -44772353 + T-rich Low_complexity Low_complexity 2 55 0 4 1461 32 43 0 0 chr3 114828616 114828662 -44771121 + AT_rich Low_complexity Low_complexity 1 46 0 4 1461 2571 117 10 0 chr3 114829058 114829450 -44770333 + Lx3_Mus LINE L1 6614 7009 0 4 1461 647 230 21 43 chr3 114829587 114829728 -44770055 + B1_Mur2 SINE Alu 1 138 -11 4 1461 609 139 39 0 chr3 114829732 114829861 -44769922 + GA-rich Low_complexity Low_complexity 4 137 0 4 1461 422 333 90 0 chr3 114830082 114830238 -44769545 + B3A SINE B2 9 178 -20 4 1461 7534 110 20 29 chr3 114830339 114831570 -44768213 - Lx3A LINE L1 0 6981 5762 4 1461 26 82 0 0 chr3 114832490 114832551 -44767232 + AT_rich Low_complexity Low_complexity 1 61 0 4 1461 31 0 0 0 chr3 114833510 114833541 -44766242 + AT_rich Low_complexity Low_complexity 1 31 0 4 1461 23 54 0 0 chr3 114833830 114833867 -44765916 + AT_rich Low_complexity Low_complexity 1 37 0 4 1461 336 252 146 23 chr3 114834356 114834486 -44765297 - Lx8 LINE L1 -103 7370 7225 4 1461 734 355 25 18 chr3 114834522 114834590 -44765193 + B4 SINE B4 13 81 -211 4 1461 5982 43 4 1 chr3 114834590 114835332 -44764451 - L1Md_F3 LINE L1 -14 6570 5827 4 1461 734 355 25 18 chr3 114835332 114835541 -44764242 + B4 SINE B4 82 291 -1 4 1461 357 214 20 0 chr3 114835986 114836084 -44763699 - Lx7 LINE L1 -19 7677 7578 4 1461 441 0 0 0 chr3 114836158 114836207 -44763576 + (TTA)n Simple_repeat Simple_repeat 3 51 0 4 1461 211 303 0 57 chr3 114836842 114836912 -44762871 + MIR3 SINE MIR 137 202 -6 4 1461 648 273 102 21 chr3 114837166 114837353 -44762430 + B3 SINE B2 15 216 0 4 1461 2783 196 27 22 chr3 114837603 114838152 -44761631 - Lx2B LINE L1 -204 6796 6245 4 1461 253 244 51 0 chr3 114840091 114840169 -44759614 - L1MC1 LINE L1 -240 6093 6012 4 1461 568 259 61 58 chr3 114840216 114840511 -44759272 - L1MC1 LINE L1 -405 5928 5633 4 1461 276 318 22 11 chr3 114840686 114840775 -44759008 - B1F2 SINE Alu -23 126 37 4 1461 894 259 60 32 chr3 114840777 114841206 -44758577 - L1MC1 LINE L1 -893 5440 5004 4 1461 2269 191 162 20 chr3 114841510 114842113 -44757670 - RMER6C LTR ERVK 0 690 2 4 1461 231 291 0 0 chr3 114842548 114842603 -44757180 + GA-rich Low_complexity Low_complexity 3 57 0 4 1461 315 257 126 18 chr3 114842636 114842747 -44757036 - B2_Mm2 SINE B2 -71 124 2 4 1461 343 326 80 43 chr3 114843275 114843462 -44756321 - MIRb SINE MIR -13 255 63 4 1461 435 119 0 0 chr3 114843735 114843802 -44755981 + (TTTTC)n Simple_repeat Simple_repeat 3 69 0 4 1461 713 287 177 31 chr3 114844330 114844657 -44755126 - MLT1B LTR MaLR -15 375 1 4 1461 227 213 0 0 chr3 114845697 114845744 -44754039 + A-rich Low_complexity Low_complexity 1 47 0 4 1461 1125 281 92 10 chr3 114845752 114846165 -44753618 - Lx5 LINE L1 -678 6372 5926 4 1461 1374 297 91 22 chr3 114846164 114846660 -44753123 + Lx5 LINE L1 6503 7032 -18 4 1461 247 290 53 21 chr3 114846950 114847045 -44752738 - ORR1E LTR MaLR -13 366 269 4 1461 732 312 101 34 chr3 114847045 114847439 -44752344 + MTD LTR MaLR 1 395 -24 4 1461 402 383 38 9 chr3 114847477 114847688 -44752095 - ORR1E LTR MaLR -127 232 16 4 1461 324 0 0 0 chr3 114847743 114847779 -44752004 + (GA)n Simple_repeat Simple_repeat 1 36 0 4 1461 369 136 0 0 chr3 114847840 114847906 -44751877 + (CATA)n Simple_repeat Simple_repeat 4 69 0 4 1461 450 0 0 0 chr3 114848062 114848112 -44751671 + (TC)n Simple_repeat Simple_repeat 1 50 0 4 1461 306 50 0 0 chr3 114848112 114848151 -44751632 + (CA)n Simple_repeat Simple_repeat 1 40 0 4 1461 221 338 159 19 chr3 114848240 114848397 -44751386 + MER5A DNA MER1_type 10 188 -1 4 1461 442 340 18 46 chr3 114849581 114849800 -44749983 + MER20 DNA MER1_type 1 213 -6 4 1461 191 371 127 17 chr3 114850380 114850498 -44749285 - MIRc SINE MIR -70 198 68 4 1461 378 0 0 0 chr3 114851408 114851450 -44748333 + (CA)n Simple_repeat Simple_repeat 2 43 0 4 1461 5430 110 53 0 chr3 114851979 114853536 -44746247 + L1VL4 LINE L1 29 1678 -1881 4 1461 4195 149 16 0 chr3 114853529 114854228 -44745555 + L1_Mur2 LINE L1 3897 4606 -1271 4 1461 3802 160 4 52 chr3 114854226 114854310 -44745473 - L1_Mm LINE L1 -525 5358 5299 4 1461 1654 21 0 0 chr3 114854310 114854499 -44745284 - B2_Mm1t SINE B2 -3 190 2 4 1461 3802 160 4 52 chr3 114854499 114855131 -44744652 - L1_Mm LINE L1 -585 5298 4676 4 1461 276 128 0 0 chr3 114855134 114855173 -44744610 + L1_Mur2 LINE L1 5366 5404 -473 4 1461 6160 93 49 2 chr3 114855171 114856069 -44743714 + L1_Mus3 LINE L1 5699 6638 0 4 1461 3201 178 7 7 chr3 114856085 114856696 -44743087 + L1_Mm LINE L1 4600 5210 -673 4 1461 1970 112 0 13 chr3 114856696 114857003 -44742780 + L1_Mus4 LINE L1 6332 6634 -2 4 1461 210 37 0 0 chr3 114857591 114857618 -44742165 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 4 1461 7017 128 10 9 chr3 114857685 114859286 -44740497 - L1_Mus4 LINE L1 0 6636 5040 4 1461 225 322 206 64 chr3 114859547 114859766 -44740017 - MLT1K LTR MaLR -334 261 12 4 1461 22 70 0 0 chr3 114860329 114860372 -44739411 + AT_rich Low_complexity Low_complexity 1 43 0 4 1461 843 282 61 7 chr3 114860488 114860767 -44739016 + Lx8 LINE L1 6999 7292 -181 4 1461 22 70 0 0 chr3 114860847 114860890 -44738893 + AT_rich Low_complexity Low_complexity 1 43 0 4 1461 690 337 53 42 chr3 114861113 114861398 -44738385 - B4 SINE B4 -3 289 2 4 1461 279 310 60 60 chr3 114862641 114862792 -44736991 + MER58A DNA MER1_type 56 206 -18 4 1461 382 287 0 0 chr3 114863805 114863899 -44735884 - MLT1A1 LTR MaLR -16 392 299 4 1461 579 78 0 0 chr3 114864038 114864128 -44735655 + (TC)n Simple_repeat Simple_repeat 1 90 0 4 1461 423 291 98 73 chr3 114864657 114864902 -44734881 + RMER2 LTR ERV1 290 540 -27 4 1461 1044 131 140 6 chr3 114864973 114865193 -44734590 + Lx LINE L1 6432 6648 -6 4 1461 249 83 0 0 chr3 114865834 114865870 -44733913 + (TG)n Simple_repeat Simple_repeat 1 36 0 5 1461 22 0 0 0 chr3 114866197 114866219 -44733564 + AT_rich Low_complexity Low_complexity 1 22 0 5 1461 186 43 0 0 chr3 114867598 114867621 -44732162 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 5 1461 306 169 22 11 chr3 114868282 114868372 -44731411 + (TA)n Simple_repeat Simple_repeat 2 92 0 5 1461 387 98 0 0 chr3 114868388 114868449 -44731334 + (TG)n Simple_repeat Simple_repeat 2 62 0 5 1461 453 36 0 0 chr3 114869283 114869338 -44730445 + (CA)n Simple_repeat Simple_repeat 1 55 0 5 1461 195 380 0 25 chr3 114869436 114869517 -44730266 + MIRb SINE MIR 132 210 -58 5 1461 273 353 66 44 chr3 114869690 114869918 -44729865 - MIRc SINE MIR -5 263 31 5 1461 3028 192 34 37 chr3 114871815 114872516 -44727267 - Lx4B LINE L1 0 7058 6363 5 1461 233 219 127 6 chr3 114872799 114872887 -44726896 + MLT1B LTR MaLR 268 374 0 5 1461 279 0 0 0 chr3 114873944 114873975 -44725808 + (TG)n Simple_repeat Simple_repeat 2 32 0 5 1461 393 131 36 0 chr3 114874154 114874238 -44725545 + (TCTA)n Simple_repeat Simple_repeat 3 89 0 5 1461 2826 212 23 16 chr3 114875247 114875813 -44723970 + Lx5 LINE L1 6477 7046 -4 5 1461 525 214 50 7 chr3 114875839 114875980 -44723803 + L1_Mur3 LINE L1 948 1094 -6618 5 1461 472 62 0 0 chr3 114876092 114876156 -44723627 - RLTR45 LTR ERVK 0 482 419 5 1461 1224 160 55 0 chr3 114876168 114876368 -44723415 + L1VL4 LINE L1 101 311 -5991 5 1461 1583 183 55 29 chr3 114876365 114876718 -44723065 + Lx3C LINE L1 6272 6973 -3 5 1461 208 196 0 82 chr3 114876760 114876821 -44722962 + A-rich Low_complexity Low_complexity 1 56 0 5 1461 456 213 84 28 chr3 114876827 114877005 -44722778 + L1_Mur2 LINE L1 1205 1395 -4485 5 1461 3184 151 86 2 chr3 114877006 114877566 -44722217 + L1VL4 LINE L1 1 595 -5707 5 1461 235 232 97 96 chr3 114877789 114877941 -44721842 + RLTR8 LTR ERVK 228 364 0 5 1461 252 86 0 0 chr3 114878377 114878412 -44721371 + (T)n Simple_repeat Simple_repeat 1 35 0 5 1461 1106 83 7 0 chr3 114878412 114878557 -44721226 - B1_Mm SINE Alu 0 147 2 5 1461 4867 115 63 62 chr3 114878558 114879159 -44720624 + RMER16-int LTR ERVK 524 1129 -4277 5 1461 2993 81 28 79 chr3 114879159 114879667 -44720116 + RLTR45 LTR ERVK 1 482 0 5 1461 4867 115 63 62 chr3 114879667 114879720 -44720063 + RMER16-int LTR ERVK 1130 1168 -4238 5 1461 188 0 74 0 chr3 114879726 114879753 -44720030 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 5 1461 1148 56 0 7 chr3 114879753 114879890 -44719893 - B1_Mm SINE Alu -10 137 1 5 1461 4867 115 63 62 chr3 114879890 114880141 -44719642 + RMER16-int LTR ERVK 1169 1431 -3975 5 1461 857 155 102 51 chr3 114880197 114880374 -44719409 + RMER16-int LTR ERVK 1327 1512 -3894 5 1461 388 274 130 49 chr3 114880379 114880563 -44719220 + RLTR41 LTR ERV1 1 199 -247 5 1461 759 260 7 99 chr3 114880676 114880970 -44718813 + RLTR45-int LTR ERVK 3279 3545 -3699 5 1461 3885 157 106 90 chr3 114880978 114881903 -44717880 + RMER16-int LTR ERVK 1715 3533 -2275 5 1461 2162 85 0 17 chr3 114881903 114882202 -44717581 + L1_Mus1 LINE L1 6274 6567 0 5 1461 3885 149 99 90 chr3 114882202 114882349 -44717434 + RMER16-int LTR ERVK 2546 2674 -2732 5 1461 899 242 50 35 chr3 114882350 114882749 -44717034 - RMER16 LTR ERVK 0 533 73 5 1461 9984 109 13 21 chr3 114882779 114884404 -44715379 + RMER16-int LTR ERVK 2670 4375 -1031 5 1461 2797 32 12 3 chr3 114884404 114884747 -44715036 + ORR1A1 LTR MaLR 1 346 0 5 1461 9984 101 11 21 chr3 114884747 114884764 -44715019 + RMER16-int LTR ERVK 4376 4396 -1010 5 1461 8539 83 10 7 chr3 114884767 114885950 -44713833 + MusHAL1 LINE L1 1472 2665 -47 5 1461 2460 121 33 8 chr3 114885950 114886349 -44713434 - RLTR9E LTR ERVK 0 409 1 5 1461 8539 83 10 7 chr3 114886349 114886402 -44713381 + MusHAL1 LINE L1 2666 2712 0 5 1461 733 158 130 0 chr3 114886395 114886579 -44713204 + L1_Mur3 LINE L1 1386 1593 -4287 5 1461 249 119 0 0 chr3 114886588 114886630 -44713153 + (TG)n Simple_repeat Simple_repeat 2 43 0 5 1461 2149 131 26 18 chr3 114886676 114887056 -44712727 + Lx3A LINE L1 6598 6980 -1 5 1461 304 322 21 62 chr3 114887092 114887284 -44712499 - Lx9 LINE L1 -310 7334 7151 5 1461 23 84 0 31 chr3 114888295 114888393 -44711390 + AT_rich Low_complexity Low_complexity 1 95 0 5 1461 288 70 0 0 chr3 114888452 114888495 -44711288 + (TAGA)n Simple_repeat Simple_repeat 4 46 0 5 1461 38 0 0 0 chr3 114888699 114888737 -44711046 + AT_rich Low_complexity Low_complexity 1 38 0 5 1461 23 54 0 0 chr3 114888813 114888850 -44710933 + AT_rich Low_complexity Low_complexity 1 37 0 5 1461 6572 103 17 16 chr3 114889512 114890503 -44709280 - L1_Mus4 LINE L1 0 6636 5645 5 1461 1557 161 73 0 chr3 114890504 114890790 -44708993 - IAPEY3_LTR LTR ERVK -12 320 14 5 1461 1401 193 61 20 chr3 114890798 114891141 -44708642 - IAPEz-int LTR ERVK 0 6481 6125 5 1461 4296 81 29 0 chr3 114891158 114891737 -44708046 - IAPEY3-int LTR ERVK -342 7338 6743 5 1461 3397 99 0 0 chr3 114891727 114892181 -44707602 - IAPEY3-int LTR ERVK -1367 6214 5761 5 1461 3465 70 0 16 chr3 114892172 114892619 -44707164 - IAPEY3-int LTR ERVK -1939 5642 5203 5 1461 793 96 35 49 chr3 114892874 114893016 -44706767 - IAPEY3-int LTR ERVK -2911 4670 4531 5 1461 469 179 18 36 chr3 114893039 114893149 -44706634 - MMETn-int LTR ERVK -2380 2464 2357 5 1461 1961 129 114 8 chr3 114893154 114893740 -44706043 - IAPEY3-int LTR ERVK -3135 4271 3569 5 1461 659 202 0 0 chr3 114893768 114893887 -44705896 - IAPEY3-int LTR ERVK -4653 2753 2635 5 1461 326 256 0 55 chr3 114893899 114893990 -44705793 - IAPEY3-int LTR ERVK -4867 2539 2454 5 1461 321 301 88 0 chr3 114894003 114894116 -44705667 - RMER16-int LTR ERVK -5077 1060 938 5 1461 1678 213 148 39 chr3 114894121 114894634 -44705149 - RMER16-int LTR ERVK -4587 819 251 5 1461 1224 131 185 23 chr3 114894746 114895138 -44704645 - IAPLTR4_I LTR ERVK -6629 952 407 5 1461 1117 80 18 47 chr3 114895137 114895308 -44704475 - IAPLTR4_I LTR ERVK -1294 176 11 5 1461 1593 150 73 0 chr3 114895308 114895594 -44704189 - IAPEY3_LTR LTR ERVK -12 320 14 5 1461 25249 150 12 8 chr3 114895602 114896871 -44702912 - L1VL4 LINE L1 -225 5658 4382 5 1461 396 0 0 0 chr3 114896871 114896915 -44702868 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 5 1461 1006 73 0 62 chr3 114896915 114897061 -44702722 - B1_Mm SINE Alu -10 137 1 5 1461 25249 150 12 8 chr3 114897061 114897587 -44702196 - L1VL4 LINE L1 -1502 4381 3849 5 1461 216 0 0 0 chr3 114897587 114897611 -44702172 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 5 1461 25249 149 12 9 chr3 114897611 114900659 -44699124 - L1VL4 LINE L1 -2035 3848 796 5 1461 26 0 0 0 chr3 114900992 114901018 -44698765 + AT_rich Low_complexity Low_complexity 1 26 0 5 1461 261 0 0 0 chr3 114902216 114902245 -44697538 + (A)n Simple_repeat Simple_repeat 1 29 0 5 1461 3810 175 35 26 chr3 114902327 114902867 -44696916 - RMER6A LTR ERVK 0 756 215 5 1461 591 40 0 0 chr3 114902867 114902941 -44696842 + (TTTC)n Simple_repeat Simple_repeat 4 77 0 5 1461 3266 46 5 0 chr3 114902942 114903334 -44696449 + MTA_Mm LTR MaLR 3 396 0 5 1461 1050 90 0 20 chr3 114903339 114903352 -44696431 - B1_Mus1 SINE Alu 0 148 137 5 1461 378 0 0 0 chr3 114903352 114903394 -44696389 + (TTTA)n Simple_repeat Simple_repeat 2 43 0 5 1461 1050 90 0 20 chr3 114903394 114903527 -44696256 - B1_Mus1 SINE Alu -12 136 5 5 1461 3810 175 35 26 chr3 114903527 114903671 -44696112 - RMER6A LTR ERVK -542 214 56 5 1461 306 0 0 0 chr3 114903671 114903705 -44696078 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 5 1461 3810 175 35 26 chr3 114903705 114903754 -44696029 - RMER6A LTR ERVK -701 55 7 5 1461 717 278 44 39 chr3 114904830 114905036 -44694747 - B3 SINE B2 -4 212 6 5 1461 38 61 0 0 chr3 114905036 114905102 -44694681 + AT_rich Low_complexity Low_complexity 1 66 0 5 1461 254 388 48 0 chr3 114905250 114905353 -44694430 + LTR33C LTR ERVL 333 440 -189 5 1461 1685 122 12 0 chr3 114905595 114905842 -44693941 + ORR1A3 LTR MaLR 69 318 -8 5 1461 365 318 120 74 chr3 114906232 114906558 -44693225 - MLT1E1 LTR MaLR -2 652 312 5 1461 424 331 0 16 chr3 114907208 114907334 -44692449 + RSINE1 SINE B4 2 125 -40 5 1461 34 0 0 0 chr3 114907361 114907395 -44692388 + AT_rich Low_complexity Low_complexity 1 34 0 5 1461 364 296 83 0 chr3 114907551 114907659 -44692124 + PB1D7 SINE Alu 2 118 -2 5 1461 182 128 26 0 chr3 114907713 114907752 -44692031 + (TG)n Simple_repeat Simple_repeat 1 40 0 5 1461 9048 118 26 9 chr3 114907920 114909531 -44690252 + Lx2 LINE L1 5360 6996 -1 5 1461 209 184 0 0 chr3 114909769 114909807 -44689976 + (TG)n Simple_repeat Simple_repeat 2 39 0 5 1461 295 73 36 0 chr3 114910821 114910876 -44688907 + (TAGA)n Simple_repeat Simple_repeat 2 58 0 5 1461 1051 99 0 11 chr3 114911356 114911530 -44688253 + (GAA)n Simple_repeat Simple_repeat 3 174 0 5 1461 578 51 0 13 chr3 114911530 114911609 -44688174 + (GAAA)n Simple_repeat Simple_repeat 4 81 0 5 1461 242 214 17 35 chr3 114911610 114911668 -44688115 + GA-rich Low_complexity Low_complexity 1 57 0 5 1461 31 44 0 0 chr3 114911957 114912002 -44687781 + AT_rich Low_complexity Low_complexity 1 45 0 5 1461 520 350 7 7 chr3 114912531 114912675 -44687108 + RSINE1 SINE B4 5 148 -17 5 1461 2579 44 9 0 chr3 114912677 114912995 -44686788 + L1Md_F2 LINE L1 5266 5586 -297 5 1461 7610 72 1 3 chr3 114912995 114913991 -44685792 + L1Md_F2 LINE L1 5587 6580 -2 5 1461 21 0 0 0 chr3 114913992 114914013 -44685770 + AT_rich Low_complexity Low_complexity 1 21 0 5 1461 339 259 70 81 chr3 114915250 114915422 -44684361 - Lx5 LINE L1 -17 7033 6864 5 1461 1533 226 70 16 chr3 114915519 114915888 -44683895 - MTD LTR MaLR -13 406 18 5 1461 224 0 65 0 chr3 114915889 114915920 -44683863 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 5 1461 224 300 0 0 chr3 114915931 114915981 -44683802 + ID4_ SINE ID 21 70 -13 5 1461 27 29 0 0 chr3 114915995 114916029 -44683754 + AT_rich Low_complexity Low_complexity 1 34 0 5 1461 319 257 13 13 chr3 114917019 114917094 -44682689 - HAL1-3A_ME LINE L1 -809 2049 1975 5 1461 274 282 30 75 chr3 114917953 114918087 -44681696 + ORR1D2 LTR MaLR 242 369 -1 5 1461 204 125 0 0 chr3 114919060 114919092 -44680691 + (ATG)n Simple_repeat Simple_repeat 2 33 0 5 1461 6171 68 10 8 chr3 114919142 114919944 -44679839 + RLTR13C2 LTR ERVK 1 804 -4 5 1461 1012 308 55 50 chr3 114919987 114920349 -44679434 - MTE2b LTR MaLR -15 364 1 5 1461 289 337 11 71 chr3 114920453 114920635 -44679148 - MIR SINE MIR -68 194 24 5 1461 205 167 0 0 chr3 114921477 114921513 -44678270 + (TAGA)n Simple_repeat Simple_repeat 1 36 0 5 1461 23 54 0 0 chr3 114921614 114921651 -44678132 + AT_rich Low_complexity Low_complexity 1 37 0 5 1461 2753 76 3 13 chr3 114921702 114922087 -44677696 - MT2C_Mm LTR ERVL -1 474 94 5 1461 742 129 27 7 chr3 114922087 114922235 -44677548 + L1_Mus4 LINE L1 6481 6631 -5 5 1461 467 306 35 30 chr3 114922299 114922501 -44677282 + B3 SINE B2 3 205 -11 5 1461 297 311 7 138 chr3 114923476 114923614 -44676169 - MTEa LTR MaLR -2 377 258 5 1461 243 246 120 88 chr3 114923760 114923858 -44675925 - MTEa LTR MaLR -154 220 116 5 1461 1634 142 108 7 chr3 114923858 114924155 -44675628 + ORR1A2 LTR MaLR 1 327 0 5 1461 243 258 183 63 chr3 114924155 114924221 -44675562 - MTEa LTR MaLR -254 116 31 5 1461 1255 69 0 22 chr3 114924323 114924501 -44675282 + L1_Mur1 LINE L1 4211 4384 -1502 5 1461 8849 114 18 6 chr3 114924495 114926611 -44673172 + Lx3A LINE L1 4825 6971 -10 6 1461 1771 179 16 74 chr3 114927109 114927476 -44672307 - ORR1B1 LTR MaLR 0 394 49 6 1461 189 0 0 0 chr3 114927800 114927821 -44671962 + (TA)n Simple_repeat Simple_repeat 1 21 0 6 1461 290 290 46 0 chr3 114927833 114927964 -44671819 - L1M2 LINE L1 -1164 4979 4843 6 1461 2989 84 2 5 chr3 114928808 114929216 -44670567 + L1_Mus2 LINE L1 6160 6566 0 6 1461 788 304 18 96 chr3 114929772 114929957 -44669826 - ORR1D2 LTR MaLR -5 365 203 6 1461 1122 76 0 0 chr3 114929957 114930102 -44669681 + B1_Mus2 SINE Alu 3 147 0 6 1461 788 304 18 96 chr3 114930102 114930312 -44669471 - ORR1D2 LTR MaLR -168 202 1 6 1461 3047 229 101 25 chr3 114930562 114931287 -44668496 - Lx6 LINE L1 0 7460 6681 6 1461 1889 208 17 2 chr3 114931306 114931710 -44668073 - L1_Mur3 LINE L1 -836 5044 4635 6 1461 1177 213 73 29 chr3 114931711 114932157 -44667626 - L1_Mur3 LINE L1 -4260 1620 1150 6 1461 418 182 20 10 chr3 114932180 114932280 -44667503 + CT-rich Low_complexity Low_complexity 3 103 0 6 1461 1036 84 17 8 chr3 114932280 114932432 -44667351 - B1_Mus1 SINE Alu 0 311 13 6 1461 443 198 10 29 chr3 114932449 114932553 -44667230 - L1_Mur3 LINE L1 -6760 968 867 6 1461 541 323 41 17 chr3 114932554 114932847 -44666936 - L1_Mur3 LINE L1 -7410 318 19 6 1461 559 297 109 28 chr3 114932853 114933137 -44666646 - L1_Mur3 LINE L1 -7259 453 147 6 1461 252 303 49 44 chr3 114933344 114933527 -44666256 - L3 LINE CR1 -607 3882 3699 6 1461 1216 49 0 0 chr3 114934180 114934324 -44665459 + B1_Mm SINE Alu 1 144 -3 6 1461 230 0 33 0 chr3 114934324 114934354 -44665429 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 6 1461 361 296 142 20 chr3 114934643 114934791 -44664992 - Lx8 LINE L1 -60 7413 7248 6 1461 289 297 14 0 chr3 114934807 114934881 -44664902 - MER54A LTR ERVL -683 218 144 6 1461 30 0 0 0 chr3 114935431 114935461 -44664322 + AT_rich Low_complexity Low_complexity 1 30 0 6 1461 195 373 99 9 chr3 114935637 114935748 -44664035 - L2a LINE L2 -14 3412 3292 6 1461 489 34 0 0 chr3 114936969 114937028 -44662755 + (CA)n Simple_repeat Simple_repeat 2 60 0 6 1461 249 200 11 34 chr3 114938357 114938445 -44661338 + (CATATA)n Simple_repeat Simple_repeat 5 90 0 6 1461 1227 125 16 0 chr3 114938740 114938924 -44660859 + B2_Mm2 SINE B2 1 187 -8 6 1461 415 108 0 30 chr3 114939361 114939428 -44660355 + B1_Mus1 SINE Alu 2 66 -82 6 1461 321 281 11 53 chr3 114939362 114939456 -44660327 + ID_B1 SINE B4 84 173 -51 6 1461 6733 54 11 3 chr3 114939572 114940430 -44659353 + L1Md_F2 LINE L1 4723 5586 -297 6 1461 7757 53 14 4 chr3 114940430 114941415 -44658368 + L1Md_F2 LINE L1 5587 6581 -1 6 1461 480 361 103 66 chr3 114941640 114941829 -44657954 - MTEa LTR MaLR -7 372 171 6 1461 1241 73 0 6 chr3 114941829 114942008 -44657775 + (TTTC)n Simple_repeat Simple_repeat 1 178 0 6 1461 480 361 103 66 chr3 114942008 114942168 -44657615 - MTEa LTR MaLR -209 170 10 6 1461 215 286 16 0 chr3 114943136 114943199 -44656584 + GA-rich Low_complexity Low_complexity 1 64 0 6 1461 227 324 243 12 chr3 114943548 114943873 -44655910 - L2a LINE L2 0 3426 3027 6 1461 953 62 0 8 chr3 114944344 114944474 -44655309 + (TTTTC)n Simple_repeat Simple_repeat 1 129 0 6 1461 704 316 63 70 chr3 114945390 114945564 -44654219 + Lx8 LINE L1 6687 6858 -615 6 1461 2005 170 32 39 chr3 114945564 114945974 -44653809 - MTB_Mm LTR MaLR 0 407 1 6 1461 704 316 63 70 chr3 114945974 114946288 -44653495 + Lx8 LINE L1 6859 7172 -301 6 1461 877 230 132 115 chr3 114946321 114946710 -44653073 + MT2A LTR ERVL 1 522 -79 6 1461 474 18 0 0 chr3 114946710 114946765 -44653018 + (TA)n Simple_repeat Simple_repeat 2 56 0 6 1461 571 256 0 60 chr3 114946779 114946962 -44652821 + ETnERV2-int LTR ERVK 2284 2455 -4951 6 1461 315 0 0 0 chr3 114947009 114947044 -44652739 + (TA)n Simple_repeat Simple_repeat 1 35 0 6 1461 466 326 66 27 chr3 114948507 114948690 -44651093 - B3A SINE B2 -8 190 1 6 1461 465 19 0 0 chr3 114949147 114949201 -44650582 + (GA)n Simple_repeat Simple_repeat 1 54 0 6 1461 678 25 0 0 chr3 114949293 114949373 -44650410 + (GGAA)n Simple_repeat Simple_repeat 1 80 0 6 1461 256 353 0 10 chr3 114949560 114949663 -44650120 - ID4_ SINE ID -43 109 8 6 182 629 248 96 8 chr3 114950080 114950320 -44649463 + Lx9 LINE L1 7377 7637 -7 6 1462 1581 152 19 141 chr3 114950892 114951267 -44648516 - ORR1B1 LTR MaLR 0 394 1 6 1462 26 0 0 0 chr3 114951408 114951434 -44648349 + AT_rich Low_complexity Low_complexity 1 26 0 6 1462 495 300 31 0 chr3 114951454 114951584 -44648199 - ID_B1 SINE B4 -7 217 84 6 1462 290 347 8 69 chr3 114951800 114951832 -44647951 - ID_B1 SINE B4 -13 211 90 6 1462 331 274 41 31 chr3 114951832 114951930 -44647853 - PB1D10 SINE Alu -10 107 9 6 1462 2162 194 7 24 chr3 114952022 114952440 -44647343 - MTC LTR MaLR -8 413 3 6 1462 333 335 90 42 chr3 114952596 114952808 -44646975 + B4A SINE B4 71 292 0 6 1462 23 33 0 0 chr3 114952858 114952888 -44646895 + AT_rich Low_complexity Low_complexity 1 30 0 6 1462 409 296 0 10 chr3 114953571 114953670 -44646113 + RSINE1 SINE B4 55 152 -13 6 1462 194 62 31 0 chr3 114953672 114953704 -44646079 + (CA)n Simple_repeat Simple_repeat 2 34 0 6 1462 482 46 0 15 chr3 114953762 114953828 -44645955 + (TAGA)n Simple_repeat Simple_repeat 2 66 0 6 1462 1610 105 53 18 chr3 114954996 114955277 -44644506 - Lx LINE L1 0 6654 6364 6 1462 267 298 167 0 chr3 114956006 114956120 -44643663 + MER94 DNA AcHobo 2 134 0 6 1462 301 337 31 0 chr3 114956308 114956406 -44643377 - L2a LINE L2 0 3426 3326 6 1462 284 367 40 96 chr3 114956427 114956677 -44643106 - MIR SINE MIR -10 252 17 6 1462 280 260 184 16 chr3 114956807 114956932 -44642851 + RMER5 LTR ERV1 43 188 -346 6 1462 1301 184 16 84 chr3 114957061 114957429 -44642354 - Lx9 LINE L1 -2 7642 7300 6 1462 369 0 0 0 chr3 114957499 114957540 -44642243 + (TG)n Simple_repeat Simple_repeat 2 42 0 6 1462 2249 179 7 19 chr3 114957544 114957966 -44641817 - Lx2 LINE L1 -6 6991 6575 6 1462 844 67 92 0 chr3 114958428 114958548 -44641235 + L1Md_F2 LINE L1 6441 6571 -11 6 1462 313 307 110 44 chr3 114958717 114959416 -44640367 + L1MD LINE L1 3798 4542 -1604 6 1462 618 281 67 0 chr3 114959991 114960155 -44639628 - MTE2b LTR MaLR -204 175 1 6 1462 674 272 69 37 chr3 114960210 114960533 -44639250 - MTB LTR MaLR -5 414 1 6 1462 2515 146 31 20 chr3 114960610 114961058 -44638725 - Lx2 LINE L1 0 6997 6545 6 1462 21 36 0 0 chr3 114961078 114961106 -44638677 + AT_rich Low_complexity Low_complexity 1 28 0 6 1462 221 311 0 63 chr3 114961360 114961439 -44638344 + ID SINE ID 1 74 -150 6 1462 553 61 24 0 chr3 114961439 114961521 -44638262 + (GA)n Simple_repeat Simple_repeat 1 84 0 6 1462 270 184 0 0 chr3 114961522 114961571 -44638212 + A-rich Low_complexity Low_complexity 2 50 0 6 1462 349 256 101 124 chr3 114962621 114962799 -44636984 - MTE2b LTR MaLR -203 176 3 6 1462 189 321 35 12 chr3 114962882 114962967 -44636816 + L3 LINE CR1 3598 3684 -805 6 1462 1131 41 29 17 chr3 114963102 114963277 -44636506 + (CA)n Simple_repeat Simple_repeat 2 178 0 6 1462 300 362 42 26 chr3 114963535 114963728 -44636055 + L3 LINE CR1 4185 4380 -109 6 1462 5331 250 32 16 chr3 114963925 114965252 -44634531 - Lx7 LINE L1 -2 7694 6347 6 1462 336 336 10 0 chr3 114965303 114965407 -44634376 - Tigger5 DNA MER2_type -12 2394 2290 6 1462 283 364 92 53 chr3 114965411 114965617 -44634166 - Tigger5 DNA MER2_type -2185 221 8 6 1462 4138 112 43 14 chr3 114966396 114966814 -44632969 - Lx3_Mus LINE L1 -26 6983 6544 6 1462 3364 33 2 0 chr3 114966814 114967207 -44632576 + MTA_Mm LTR MaLR 1 394 -2 6 1462 4138 112 43 14 chr3 114967207 114967413 -44632370 - Lx3_Mus LINE L1 -466 6543 6341 6 1462 4278 87 43 0 chr3 114967408 114968015 -44631768 + Lx3_Mus LINE L1 5169 5801 -85 6 1462 22210 60 10 19 chr3 114968014 114970305 -44629478 + L1_Mm LINE L1 2499 4817 -1066 6 1462 2511 34 3 50 chr3 114970305 114970643 -44629140 - RLTRETN_Mm LTR ERVK 0 322 1 6 1462 22210 60 10 19 chr3 114970643 114971120 -44628663 + L1_Mm LINE L1 4818 5243 -640 6 1462 690 13 0 0 chr3 114971120 114971199 -44628584 + (TG)n Simple_repeat Simple_repeat 2 80 0 6 1462 22210 60 10 19 chr3 114971199 114971449 -44628334 + L1_Mm LINE L1 5244 5491 -392 6 1462 5106 53 9 0 chr3 114971465 114972111 -44627672 + L1Md_F2 LINE L1 5931 6582 0 6 1462 3744 84 30 0 chr3 114972111 114972645 -44627138 + Lx3_Mus LINE L1 5784 6333 -676 6 1462 21 0 0 0 chr3 114973375 114973396 -44626387 + AT_rich Low_complexity Low_complexity 1 21 0 6 1462 30 83 0 0 chr3 114974055 114974127 -44625656 + AT_rich Low_complexity Low_complexity 1 72 0 6 1462 286 225 37 12 chr3 114974329 114974410 -44625373 - L1MA4 LINE L1 -373 5927 5845 6 1462 312 367 38 19 chr3 114974407 114974721 -44625062 - L1MA4 LINE L1 -602 5689 5370 6 1462 241 189 0 19 chr3 114974715 114974769 -44625014 - L1_Mur2 LINE L1 -918 4959 4907 6 1462 410 217 140 0 chr3 114974776 114974919 -44624864 - L1MD LINE L1 -2889 3257 3095 6 1462 8114 38 0 0 chr3 114974925 114976081 -44623702 - L1Md_T LINE L1 0 6582 5427 6 1462 446 276 12 6 chr3 114976128 114976296 -44623487 - L1M2 LINE L1 -3071 3072 2904 6 1462 2330 151 23 0 chr3 114976945 114977330 -44622453 - ORR1B1 LTR MaLR 0 394 1 6 1462 195 129 0 0 chr3 114977467 114977498 -44622285 + (A)n Simple_repeat Simple_repeat 1 31 0 6 1462 807 303 87 0 chr3 114978671 114978925 -44620858 - B4A SINE B4 -14 278 3 6 1462 570 286 0 0 chr3 114979632 114979751 -44620032 + B3A SINE B2 1 119 -79 6 1462 990 116 0 0 chr3 114979852 114979990 -44619793 + B2_Mm2 SINE B2 2 139 -56 6 1462 249 33 0 0 chr3 114979999 114980029 -44619754 + (CAAA)n Simple_repeat Simple_repeat 3 32 0 6 1462 380 329 84 73 chr3 114980238 114980434 -44619349 - MER110A LTR ERV1 -12 479 274 6 1462 1326 222 86 23 chr3 114980434 114980785 -44618998 - MTE2b LTR MaLR -4 375 3 6 1462 380 325 83 80 chr3 114980785 114980994 -44618789 - MER110A LTR ERV1 -183 285 92 6 1462 238 292 42 0 chr3 114981473 114981545 -44618238 + MTC LTR MaLR 347 421 0 6 1462 353 307 63 0 chr3 114981768 114981895 -44617888 + MIR SINE MIR 57 191 -71 6 1462 508 219 17 17 chr3 114982045 114982217 -44617566 - Lx9 LINE L1 -15 7629 7458 6 1462 180 0 0 0 chr3 114982217 114982237 -44617546 + (TA)n Simple_repeat Simple_repeat 1 20 0 6 1462 802 201 72 14 chr3 114982311 114982533 -44617250 + Lx9 LINE L1 7401 7635 -9 7 1462 1086 110 0 0 chr3 114982553 114982699 -44617084 + B1_Mus2 SINE Alu 2 147 0 7 1462 794 278 145 24 chr3 114982948 114983653 -44616130 + L1MA9 LINE L1 4396 5184 -956 7 1462 309 40 0 0 chr3 114983653 114983703 -44616080 + Lx LINE L1 6599 6648 -6 7 1462 794 278 145 24 chr3 114983703 114983819 -44615964 + L1MA9 LINE L1 5185 5316 -824 7 1462 1106 102 0 0 chr3 114983828 114983985 -44615798 + B2_Mm2 SINE B2 2 158 -37 7 1462 288 0 0 0 chr3 114983986 114984018 -44615765 + (TAAA)n Simple_repeat Simple_repeat 3 34 0 7 1462 2535 135 34 47 chr3 114984160 114984627 -44615156 - RMER6B LTR ERVK 0 461 1 7 1462 1483 281 130 17 chr3 114984659 114985411 -44614372 + L1MA9 LINE L1 5475 6311 -1 7 1462 1392 246 50 56 chr3 114986699 114987182 -44612601 - RLTR28B LTR ERVL 0 481 2 7 1462 237 266 16 0 chr3 114987529 114987590 -44612193 + MER67A LTR ERV1 6 67 -476 7 1462 449 365 112 16 chr3 114987590 114987902 -44611881 + MER67B LTR ERV1 1 342 -319 7 1462 576 260 107 27 chr3 114988076 114988226 -44611557 + RSINE1 SINE B4 4 165 0 7 1462 1016 315 39 3 chr3 114988325 114988682 -44611101 + MER34A1 LTR ERV1 10 379 -208 7 1462 354 45 0 0 chr3 114988684 114988728 -44611055 + (A)n Simple_repeat Simple_repeat 1 44 0 7 1462 279 248 220 0 chr3 114988732 114988841 -44610942 - RSINE1 SINE B4 -30 135 3 7 1462 34954 66 3 4 chr3 114988881 114994910 -44604873 - L1Md_F2 LINE L1 -1 6584 462 7 1462 570 81 0 0 chr3 114994965 114995052 -44604731 + Lx LINE L1 6568 6654 0 7 1462 507 176 24 36 chr3 114995053 114995183 -44604600 + GA-rich Low_complexity Low_complexity 5 135 0 7 1462 1158 85 17 0 chr3 114995183 114995360 -44604423 + (GGAAA)n Simple_repeat Simple_repeat 1 180 0 7 1462 507 176 24 36 chr3 114995360 114995394 -44604389 + polypurine Low_complexity Low_complexity 136 167 0 7 1462 286 289 41 72 chr3 114995585 114995682 -44604101 - MLT1B LTR MaLR -25 365 272 7 1462 1963 217 9 186 chr3 114995688 114996430 -44603353 - RMER19C LTR ERVK 0 611 1 7 1462 6024 131 40 60 chr3 114996430 114996811 -44602972 - MurERV4_19-int LTR ERVK 0 5780 5252 7 1462 1491 32 26 16 chr3 114996811 114997002 -44602781 - B2_Mm1a SINE B2 0 193 1 7 1462 6024 122 40 67 chr3 114997002 114997899 -44601884 - MurERV4_19-int LTR ERVK -529 5251 4388 7 1462 477 0 0 0 chr3 114998396 114998449 -44601334 + (TG)n Simple_repeat Simple_repeat 2 54 0 7 1462 706 117 9 0 chr3 114998631 114998742 -44601041 + Lx4A LINE L1 5685 5796 -1262 7 1462 277 339 30 97 chr3 114998825 114998959 -44600824 + PB1D10 SINE Alu 8 132 -15 7 1462 1288 102 0 5 chr3 114999359 114999547 -44600236 - Lx5 LINE L1 -1258 5792 5606 7 1462 2054 174 76 27 chr3 114999551 115000000 -44599783 + Lx5 LINE L1 5785 6255 -795 7 1462 3475 180 52 42 chr3 115000003 115000773 -44599010 + Lx5 LINE L1 6259 7036 -14 1 1462 192 97 0 0 chr3 115000773 115000804 -44598979 + (TTAA)n Simple_repeat Simple_repeat 3 33 0 2 1462 575 309 49 9 chr3 115002140 115002307 -44597476 + B3A SINE B2 2 168 -30 3 1462 207 0 0 0 chr3 115002307 115002330 -44597453 + (CA)n Simple_repeat Simple_repeat 2 24 0 4 1462 307 321 35 85 chr3 115002330 115002363 -44597420 + B2_Mm2 SINE B2 164 192 -3 3 1462 2644 184 64 82 chr3 115002381 115003003 -44596780 + RMER19C LTR ERVK 1 611 0 5 1462 404 304 17 42 chr3 115003589 115003709 -44596074 + PB1D10 SINE Alu 1 117 0 6 1462 216 0 0 0 chr3 115006136 115006160 -44593623 + (TG)n Simple_repeat Simple_repeat 1 24 0 7 1462 468 125 0 0 chr3 115006160 115006256 -44593527 + (GA)n Simple_repeat Simple_repeat 2 97 0 8 1462 6460 168 18 2 chr3 115006865 115008498 -44591285 - Lx2 LINE L1 -722 6275 4609 9 1462 1532 193 16 110 chr3 115008500 115008870 -44590913 - ORR1B1 LTR MaLR -6 364 41 1 1462 1779 269 23 19 chr3 115009028 115009700 -44590083 + Lx9 LINE L1 5272 5986 -1658 1 1462 621 0 0 0 chr3 115009903 115009972 -44589811 + (GA)n Simple_repeat Simple_repeat 1 69 0 1 1462 334 316 108 5 chr3 115010038 115010232 -44589551 + Lx9 LINE L1 7225 7438 -206 1 1462 363 44 0 0 chr3 115010294 115010339 -44589444 + (TATG)n Simple_repeat Simple_repeat 4 48 0 1 1462 23 0 0 0 chr3 115010456 115010479 -44589304 + AT_rich Low_complexity Low_complexity 1 23 0 1 1462 22 35 0 0 chr3 115010556 115010585 -44589198 + AT_rich Low_complexity Low_complexity 1 29 0 1 1462 528 277 88 24 chr3 115011957 115012127 -44587656 + Lx7 LINE L1 6328 6508 -1188 1 1462 212 217 14 14 chr3 115012166 115012236 -44587547 + (TTATA)n Simple_repeat Simple_repeat 1 70 0 1 1462 702 221 57 5 chr3 115014648 115014857 -44584926 + Lx9 LINE L1 7230 7449 -195 1 1462 315 0 0 0 chr3 115014859 115014894 -44584889 + (CA)n Simple_repeat Simple_repeat 2 36 0 1 1462 337 174 70 0 chr3 115014895 115014981 -44584802 + Lx9 LINE L1 7519 7610 -34 1 1462 339 44 0 0 chr3 115015819 115015864 -44583919 + (CA)n Simple_repeat Simple_repeat 2 46 0 2 1462 263 260 17 152 chr3 115015907 115016025 -44583758 + MT2B LTR ERVL 152 253 -348 2 1462 450 239 26 34 chr3 115015924 115016041 -44583742 + B1_Mus1 SINE Alu 1 116 -32 2 1462 21 36 0 0 chr3 115016225 115016253 -44583530 + AT_rich Low_complexity Low_complexity 1 28 0 2 1462 519 112 0 0 chr3 115016320 115016400 -44583383 + (TG)n Simple_repeat Simple_repeat 1 80 0 2 1462 505 314 8 8 chr3 115016412 115016537 -44583246 - RSINE1 SINE B4 -30 135 11 2 1462 880 257 125 6 chr3 115016814 115017204 -44582579 - RCHARR1 DNA MER1_type -6 968 533 2 1462 367 237 42 120 chr3 115017351 115017567 -44582216 - L1M2 LINE L1 -2340 4502 4304 2 1462 597 179 35 14 chr3 115017563 115017705 -44582078 - Lx LINE L1 -1 6653 6509 2 1462 6139 99 34 33 chr3 115017687 115019066 -44580717 - Lx LINE L1 -83 6571 5199 2 1462 292 300 14 0 chr3 115019119 115019189 -44580594 - ID4_ SINE ID -11 72 2 2 1462 716 298 59 37 chr3 115019192 115019596 -44580187 - L1M2 LINE L1 -3416 3429 3017 2 1462 553 309 7 21 chr3 115019634 115019776 -44580007 - RSINE1 SINE B4 -21 144 5 3 1462 347 328 97 23 chr3 115019787 115019962 -44579821 - L1M4c LINE L1 -3820 2562 2375 3 1462 237 345 0 0 chr3 115020252 115020336 -44579447 - L1M4c LINE L1 -4622 1762 1679 3 1462 366 315 12 24 chr3 115020331 115020497 -44579286 - L1M2 LINE L1 -4323 2526 2363 2 1462 2604 154 29 40 chr3 115020821 115021267 -44578516 - RLTR41 LTR ERV1 -1 445 5 3 1462 525 330 32 0 chr3 115021841 115022026 -44577757 - B3A SINE B2 -7 191 1 3 1462 297 232 50 10 chr3 115022205 115022305 -44577478 - L1M2 LINE L1 -5029 1750 1647 2 1462 324 0 0 0 chr3 115022903 115022939 -44576844 + (CA)n Simple_repeat Simple_repeat 2 37 0 3 1462 441 0 0 0 chr3 115023867 115023916 -44575867 + (TA)n Simple_repeat Simple_repeat 2 50 0 3 1462 3459 238 47 128 chr3 115024071 115024577 -44575206 - RLTR25B LTR ERVK -4 1099 675 3 1462 2219 69 10 0 chr3 115024577 115024866 -44574917 - L1_Mus1 LINE L1 -1 6566 6275 3 1462 3459 198 60 72 chr3 115024866 115025589 -44574194 - RLTR25B LTR ERVK -306 722 1 3 1462 1787 251 25 19 chr3 115025752 115026223 -44573560 + RMER19C LTR ERVK 138 611 0 3 1462 255 365 84 98 chr3 115026223 115026515 -44573268 - ORR1E LTR MaLR -70 289 3 3 1462 21 0 0 0 chr3 115026602 115026623 -44573160 + AT_rich Low_complexity Low_complexity 1 21 0 4 1462 334 265 0 24 chr3 115026932 115027017 -44572766 - B4A SINE B4 -52 240 158 4 1462 292 336 18 18 chr3 115028025 115028137 -44571646 + L2a LINE L2 3311 3422 -4 4 1462 407 244 47 2 chr3 115029070 115029193 -44570590 + Lx8 LINE L1 5619 5744 -136 4 1462 9238 118 25 8 chr3 115029209 115031053 -44568730 - Lx4A LINE L1 -2 7056 5176 4 1462 5833 126 10 14 chr3 115031054 115031307 -44568476 + L1_Mur2 LINE L1 3690 3951 -1926 4 1462 306 0 0 0 chr3 115031307 115031341 -44568442 + (CA)n Simple_repeat Simple_repeat 2 35 0 4 1462 5833 126 10 14 chr3 115031341 115032114 -44567669 + L1_Mur2 LINE L1 3952 4711 -1166 4 1462 1675 307 86 27 chr3 115032111 115032494 -44567289 + Lx8 LINE L1 5754 6180 -1293 4 1462 378 0 0 0 chr3 115032494 115032536 -44567247 + (TA)n Simple_repeat Simple_repeat 1 42 0 4 1462 1675 329 98 27 chr3 115032536 115033565 -44566218 + Lx8 LINE L1 6181 7266 -207 4 1462 34890 34 1 8 chr3 115033640 115038845 -44560938 + L1Md_T LINE L1 423 5586 -297 4 1462 8519 32 0 0 chr3 115038845 115039841 -44559942 + L1Md_T LINE L1 5587 6582 0 4 1462 513 84 0 0 chr3 115039881 115039952 -44559831 + (GA)n Simple_repeat Simple_repeat 2 72 0 4 1462 221 152 0 0 chr3 115039952 115039985 -44559798 + polypurine Low_complexity Low_complexity 4 36 0 5 1462 5523 117 43 23 chr3 115040084 115040988 -44558795 + Lx3B LINE L1 6051 6972 -1 5 1462 21 0 0 0 chr3 115041069 115041090 -44558693 + AT_rich Low_complexity Low_complexity 1 21 0 5 1462 180 111 0 0 chr3 115042371 115042398 -44557385 + (A)n Simple_repeat Simple_repeat 1 27 0 5 1462 601 299 12 55 chr3 115043297 115043552 -44556231 + Lx8 LINE L1 7228 7471 -2 5 1462 1141 75 0 0 chr3 115043561 115043708 -44556075 + B1_Mus2 SINE Alu 1 147 0 5 1462 402 79 0 0 chr3 115043840 115043903 -44555880 + (A)n Simple_repeat Simple_repeat 1 63 0 5 1462 738 23 0 0 chr3 115044142 115044230 -44555553 + (TC)n Simple_repeat Simple_repeat 1 88 0 5 1462 224 247 101 25 chr3 115044497 115044576 -44555207 + MER5A DNA MER1_type 53 137 -52 5 1462 180 111 0 0 chr3 115044581 115044608 -44555175 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 5 1462 379 280 71 71 chr3 115045037 115045191 -44554592 + MTE2a LTR MaLR 226 379 0 6 1462 350 243 52 0 chr3 115046118 115046254 -44553529 + Lx9 LINE L1 7502 7644 0 6 1462 251 348 27 41 chr3 115047036 115047183 -44552600 + MIRb SINE MIR 64 208 -60 6 1462 497 317 49 0 chr3 115047195 115047337 -44552446 + B1F1 SINE Alu 1 149 0 6 1462 2976 22 0 0 chr3 115048178 115048539 -44551244 + L1Md_T LINE L1 5226 5586 -297 6 1462 8480 30 0 0 chr3 115048539 115049552 -44550231 + L1Md_T LINE L1 5587 6582 0 6 1462 284 243 115 10 chr3 115049561 115049665 -44550118 + B3 SINE B2 98 212 -4 6 1462 225 94 0 0 chr3 115050535 115050567 -44549216 + (A)n Simple_repeat Simple_repeat 1 32 0 6 1462 2039 234 34 28 chr3 115051083 115051611 -44548172 + Lx6 LINE L1 5996 6526 -934 6 1462 1983 97 7 10 chr3 115051602 115051904 -44547879 - Lx3_Mus LINE L1 -200 6809 6509 6 1462 1472 48 5 0 chr3 115051956 115052143 -44547640 + L1Md_T LINE L1 6003 6190 -392 6 1462 1665 230 26 186 chr3 115052143 115052805 -44546978 - RMER19C LTR ERVK -3 608 53 7 1462 186 43 0 0 chr3 115052808 115052831 -44546952 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 7 1462 457 309 110 0 chr3 115052937 115053073 -44546710 - LTR53 LTR ERVL -361 158 8 7 1462 1170 61 0 26 chr3 115053382 115053533 -44546250 - B1_Mus1 SINE Alu 0 148 2 7 1462 349 312 148 52 chr3 115053547 115053777 -44546006 + MLT1D LTR MaLR 5 256 -249 7 1462 609 178 115 63 chr3 115053876 115054050 -44545733 - URR1A DNA MER1_type -7 219 37 7 1462 316 289 111 0 chr3 115054052 115054187 -44545596 + MLT1D LTR MaLR 356 505 0 7 1462 229 291 22 44 chr3 115054553 115054643 -44545140 + L2b LINE L2 3093 3180 -195 7 1462 593 266 136 77 chr3 115055551 115055824 -44543959 + B4A SINE B4 4 292 0 7 1462 337 206 8 38 chr3 115055852 115055983 -44543800 + (CATATA)n Simple_repeat Simple_repeat 2 128 0 7 1462 255 344 0 0 chr3 115056014 115056078 -44543705 - L2b LINE L2 -223 3152 3089 7 1462 6986 119 58 10 chr3 115056482 115057699 -44542084 + Lx3_Mus LINE L1 5729 7004 -5 8 1462 204 188 0 0 chr3 115057832 115057864 -44541919 + (TTTCG)n Simple_repeat Simple_repeat 4 35 0 8 1462 527 227 39 112 chr3 115058544 115058777 -44541006 + L1M5 LINE L1 4549 4764 -1382 8 1462 1211 255 40 0 chr3 115059157 115059455 -44540328 + Lx6 LINE L1 6409 6718 -742 8 1462 2301 231 80 20 chr3 115059450 115060050 -44539733 + Lx6 LINE L1 6825 7460 0 8 1462 387 324 95 35 chr3 115060300 115060585 -44539198 + L1M5 LINE L1 4853 5154 -992 8 1462 440 305 113 99 chr3 115060748 115060970 -44538813 - MLT1F2 LTR MaLR -181 388 164 8 1462 353 119 0 0 chr3 115061149 115061208 -44538575 - Lx4A LINE L1 -1207 5851 5793 8 1462 1801 218 97 10 chr3 115061211 115061697 -44538086 + Lx5 LINE L1 5820 6347 -703 8 1462 240 274 15 46 chr3 115062091 115062221 -44537562 + GA-rich Low_complexity Low_complexity 2 127 0 8 1462 270 0 0 0 chr3 115062949 115062979 -44536804 + (CAAAAA)n Simple_repeat Simple_repeat 3 32 0 8 1462 31 44 0 0 chr3 115063213 115063258 -44536525 + AT_rich Low_complexity Low_complexity 1 45 0 8 1462 198 0 0 0 chr3 115063501 115063523 -44536260 + (A)n Simple_repeat Simple_repeat 1 22 0 9 1462 2975 56 0 0 chr3 115063728 115064085 -44535698 - IAPEY2_LTR LTR ERVK 0 357 1 9 1462 423 0 0 0 chr3 115064943 115064990 -44534793 + (CA)n Simple_repeat Simple_repeat 1 47 0 9 1462 34 24 0 0 chr3 115065606 115065647 -44534136 + AT_rich Low_complexity Low_complexity 1 41 0 9 1462 1542 155 82 3 chr3 115065647 115065938 -44533845 - Lx5 LINE L1 -501 6549 6236 9 1462 2297 209 45 4 chr3 115065956 115066442 -44533341 + Lx5 LINE L1 6545 7050 0 9 1462 24 0 0 0 chr3 115066442 115066466 -44533317 + AT_rich Low_complexity Low_complexity 1 24 0 9 1462 22 35 0 0 chr3 115066914 115066943 -44532840 + AT_rich Low_complexity Low_complexity 1 29 0 9 1462 22 35 0 0 chr3 115067155 115067184 -44532599 + AT_rich Low_complexity Low_complexity 1 29 0 9 1462 418 336 86 60 chr3 115068469 115068738 -44531045 - B4 SINE B4 -16 276 1 9 1462 25 65 0 0 chr3 115069069 115069115 -44530668 + AT_rich Low_complexity Low_complexity 1 46 0 9 1462 1028 300 45 37 chr3 115069563 115069764 -44530019 - MTEb LTR MaLR -2 377 183 1 1462 372 43 0 0 chr3 115069764 115069810 -44529973 + (TTAG)n Simple_repeat Simple_repeat 3 48 0 1 1462 1028 300 45 37 chr3 115069810 115069961 -44529822 - MTEb LTR MaLR -197 182 22 1 1462 658 298 12 12 chr3 115070510 115070683 -44529100 + RMER15 LTR ERVL 279 451 -124 1 1462 2147 123 15 6 chr3 115070683 115071017 -44528766 - IAPLTR1a_Mm LTR ERVK 0 337 1 1 1462 8214 48 9 7 chr3 115071019 115072093 -44527690 - IAPEz-int LTR ERVK -2 6479 5403 1 1462 17456 82 43 17 chr3 115072074 115074668 -44525115 - IAPEz-int LTR ERVK -3811 2670 8 1 1462 2147 123 15 6 chr3 115074668 115075002 -44524781 - IAPLTR1a_Mm LTR ERVK 0 337 1 1 1462 30 45 0 0 chr3 115075871 115075915 -44523868 + AT_rich Low_complexity Low_complexity 1 44 0 1 1462 1958 204 12 12 chr3 115076512 115076928 -44522855 - Lx9 LINE L1 -638 7006 6591 1 1462 1975 211 61 33 chr3 115076924 115077531 -44522252 + Lx9 LINE L1 7020 7643 -1 1 1462 1365 207 119 3 chr3 115077681 115078016 -44521767 - ORR1D1 LTR MaLR 0 374 1 1 1462 851 152 54 6 chr3 115078471 115078637 -44521146 + Lx LINE L1 6478 6651 -3 1 1462 496 317 18 18 chr3 115079525 115079692 -44520091 - MLT1H LTR MaLR -275 274 108 1 1463 180 0 0 0 chr3 115082131 115082151 -44517632 + (TTTTG)n Simple_repeat Simple_repeat 3 22 0 1 1463 480 286 87 37 chr3 115084387 115084676 -44515107 - RMER20B LTR ERVK -32 595 234 1 1463 300 358 24 12 chr3 115085868 115086035 -44513748 - ERVL-E-int LTR ERVL -3208 2459 2291 1 1463 3716 60 0 29 chr3 115086588 115087072 -44512711 + L1_Mus1 LINE L1 6098 6567 0 1 1463 328 340 47 34 chr3 115087139 115087288 -44512495 - MLT1N2 LTR MaLR -13 549 399 1 1463 285 218 108 9 chr3 115087490 115087601 -44512182 - Lx5 LINE L1 -7 7043 6922 1 1463 636 271 103 57 chr3 115087662 115088049 -44511734 - Arthur1 DNA Tip100 -123 3824 3420 1 1463 518 355 60 57 chr3 115088387 115088719 -44511064 - MER77 LTR ERVL -4 603 271 1 1463 24 67 0 0 chr3 115088755 115088800 -44510983 + AT_rich Low_complexity Low_complexity 1 45 0 1 1463 411 319 162 20 chr3 115089366 115089619 -44510164 + LTR50 LTR ERVL 35 323 -472 1 1463 26 0 0 0 chr3 115090177 115090203 -44509580 + AT_rich Low_complexity Low_complexity 1 26 0 1 1463 828 304 62 72 chr3 115090254 115090661 -44509122 + MTE2a LTR MaLR 1 419 0 1 1463 216 0 0 0 chr3 115092060 115092084 -44507699 + (A)n Simple_repeat Simple_repeat 1 24 0 1 1463 2391 233 65 63 chr3 115092202 115092526 -44507257 - RMER1C Other Other -5 1337 1035 1 1463 306 0 0 0 chr3 115092526 115092560 -44507223 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 1 1463 2391 245 55 51 chr3 115092560 115093195 -44506588 - RMER1C Other Other -308 1034 52 1 1463 198 0 0 0 chr3 115093249 115093271 -44506512 + (TTTTTG)n Simple_repeat Simple_repeat 2 23 0 1 1463 1396 227 106 3 chr3 115094968 115095290 -44504493 + RMER1B Other Other 61 415 -651 1 1463 525 219 0 0 chr3 115095379 115095498 -44504285 + A-rich Low_complexity Low_complexity 4 122 0 1 1463 2974 274 54 30 chr3 115095498 115096515 -44503268 + Lx8 LINE L1 6086 7127 -346 1 1463 36101 14 1 7 chr3 115096710 115101915 -44497868 + L1Md_A LINE L1 423 5586 -297 1 1463 8660 17 6 0 chr3 115101915 115102904 -44496879 + L1Md_A LINE L1 5587 6581 -1 1 1463 591 316 85 42 chr3 115102925 115103546 -44496237 + L1M2 LINE L1 4374 5021 -1122 1 1463 1054 106 0 0 chr3 115103546 115103687 -44496096 + B1_Mus1 SINE Alu 3 143 -5 1 1463 725 85 0 9 chr3 115103722 115103829 -44495954 + (GGAA)n Simple_repeat Simple_repeat 3 108 0 1 1463 372 324 76 32 chr3 115103834 115104019 -44495764 + L1M2 LINE L1 5013 5205 -938 1 1463 21 0 0 0 chr3 115104198 115104219 -44495564 + AT_rich Low_complexity Low_complexity 1 21 0 1 1463 1270 43 0 0 chr3 115104238 115104399 -44495384 - L1Md_A LINE L1 -1 6581 6421 1 1463 1498 192 70 0 chr3 115104554 115104841 -44494942 - RMER15 LTR ERVL -5 570 264 1 1463 323 217 0 0 chr3 115104821 115104881 -44494902 - RMER15 LTR ERVL -512 63 4 1 1463 1138 219 39 32 chr3 115105040 115105398 -44494385 - Lx6 LINE L1 0 7696 7145 1 1463 192 152 0 0 chr3 115105398 115105431 -44494352 + A-rich Low_complexity Low_complexity 1 33 0 1 1463 24 0 0 0 chr3 115105533 115105557 -44494226 + AT_rich Low_complexity Low_complexity 1 24 0 1 1463 6014 170 98 43 chr3 115105895 115106960 -44492823 + RLTR22_Mur LTR ERVK 1 1132 -716 1 1463 4553 70 2 2 chr3 115106960 115107550 -44492233 - L1_Mus1 LINE L1 0 6567 5978 1 1463 6014 170 98 43 chr3 115107550 115107883 -44491900 + RLTR22_Mur LTR ERVK 1133 1476 -372 1 1463 556 159 28 9 chr3 115107879 115107987 -44491796 + RLTR22_Mur LTR ERVK 1738 1847 -1 1 1463 1087 76 7 0 chr3 115109837 115109982 -44489801 + B1_Mus1 SINE Alu 1 146 -2 1 1463 519 31 0 0 chr3 115109982 115110047 -44489736 + (TAAA)n Simple_repeat Simple_repeat 2 66 0 1 1463 23 0 0 0 chr3 115110250 115110273 -44489510 + AT_rich Low_complexity Low_complexity 1 23 0 1 1463 2259 69 3 3 chr3 115111798 115112103 -44487680 + L1Md_F2 LINE L1 6273 6577 -5 1 1463 232 225 26 66 chr3 115112935 115113011 -44486772 + RMER15 LTR ERVL 45 117 -458 1 1463 1832 169 66 20 chr3 115113011 115113361 -44486422 - ORR1B1 LTR MaLR 0 394 29 1 1463 602 346 81 0 chr3 115113391 115113651 -44486132 + RMER15 LTR ERVL 272 552 -23 1 1463 1017 220 97 16 chr3 115115073 115115270 -44484513 - Lx9 LINE L1 0 7644 7419 1 1463 315 0 0 0 chr3 115115270 115115305 -44484478 + (TC)n Simple_repeat Simple_repeat 2 36 0 1 1463 392 0 21 0 chr3 115115305 115115352 -44484431 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 1463 1017 220 97 16 chr3 115115352 115115472 -44484311 - Lx9 LINE L1 -226 7418 7301 1 1463 324 120 0 0 chr3 115115480 115115530 -44484253 + (TG)n Simple_repeat Simple_repeat 1 50 0 1 1463 331 64 0 0 chr3 115115722 115115769 -44484014 - Lx LINE L1 -344 6310 6264 1 1463 588 135 117 0 chr3 115115763 115115874 -44483909 + Lx2 LINE L1 6651 6774 -223 1 1463 3249 202 3 19 chr3 115115864 115116544 -44483239 + Lx9 LINE L1 6537 7205 -439 1 1463 4971 93 4 23 chr3 115116604 115117385 -44482398 + L1_Mus2 LINE L1 3770 4535 -1348 1 1463 4720 120 81 56 chr3 115117382 115118293 -44481490 + L1_Mus2 LINE L1 5629 6562 -4 1 1463 2148 254 12 19 chr3 115118482 115118995 -44480788 + RMER5 LTR ERV1 1 509 -25 1 1463 22 0 0 0 chr3 115119189 115119211 -44480572 + AT_rich Low_complexity Low_complexity 1 22 0 1 1463 353 344 118 59 chr3 115121367 115121806 -44477977 + MLT1C LTR MaLR 3 467 0 1 1463 272 246 194 10 chr3 115122102 115122215 -44477568 + MTE2b LTR MaLR 240 373 -6 1 1463 579 336 171 46 chr3 115122499 115122938 -44476845 - MLT1F LTR MaLR 0 548 55 1 1463 376 338 61 54 chr3 115123096 115123243 -44476540 + B1F1 SINE Alu 1 148 -1 1 1463 33977 52 7 13 chr3 115123449 115128814 -44470969 + L1Md_T LINE L1 298 5586 -297 1 1463 7914 56 2 0 chr3 115128814 115129796 -44469987 + L1Md_T LINE L1 5587 6570 -12 1 1463 22 0 0 0 chr3 115129996 115130018 -44469765 + AT_rich Low_complexity Low_complexity 1 22 0 1 1463 322 324 18 103 chr3 115130095 115130260 -44469523 + ID_B1 SINE B4 70 220 -4 1 1463 688 302 93 54 chr3 115130267 115130547 -44469236 + B4A SINE B4 1 291 -1 1 1463 3452 18 5 0 chr3 115130945 115131339 -44468444 - MTA_Mm LTR MaLR 0 396 1 1 1463 9111 34 4 1 chr3 115131339 115132434 -44467349 - MTA_Mm-int LTR MaLR 0 1098 1 1 1463 3452 18 5 0 chr3 115132434 115132828 -44466955 - MTA_Mm LTR MaLR 0 396 1 1 1463 395 36 0 0 chr3 115132828 115132883 -44466900 - MTA_Mm-int LTR MaLR 0 1098 1044 1 1463 596 39 39 0 chr3 115132867 115132945 -44466838 + MTA_Mm LTR MaLR 316 396 0 1 1463 21 0 0 0 chr3 115133164 115133185 -44466598 + AT_rich Low_complexity Low_complexity 1 21 0 1 1463 321 354 85 51 chr3 115133876 115134111 -44465672 - MER34A LTR ERV1 -326 245 3 1 1463 367 310 68 0 chr3 115134691 115134823 -44464960 + B1F SINE Alu 1 140 -9 1 1463 279 113 0 0 chr3 115134823 115134876 -44464907 + (TC)n Simple_repeat Simple_repeat 1 53 0 1 1463 6487 191 43 75 chr3 115134966 115136796 -44462987 + L1_Mur2 LINE L1 3987 5757 -120 1 1463 703 311 29 37 chr3 115136778 115137022 -44462761 - RMER1B Other Other -779 287 46 1 1463 727 310 45 45 chr3 115137249 115137536 -44462247 + B4 SINE B4 2 288 -4 1 1463 440 333 23 0 chr3 115137570 115137699 -44462084 + B1F1 SINE Alu 9 140 -9 1 1463 489 17 0 0 chr3 115137705 115137763 -44462020 + (CATA)n Simple_repeat Simple_repeat 2 59 0 1 1463 24 53 0 0 chr3 115137866 115137904 -44461879 + AT_rich Low_complexity Low_complexity 1 38 0 1 1463 584 348 6 60 chr3 115138073 115138391 -44461392 + Lx8 LINE L1 6421 6721 -752 1 1463 241 326 0 0 chr3 115138399 115138497 -44461286 + Lx6 LINE L1 191 288 -7440 1 1463 2874 187 107 18 chr3 115138495 115138846 -44460937 + Lx6 LINE L1 878 1257 -6471 1 1463 333 0 0 0 chr3 115138846 115138883 -44460900 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 1463 2874 180 76 0 chr3 115138883 115139527 -44460256 + Lx6 LINE L1 1258 1949 -3931 1 1463 30 69 0 0 chr3 115139574 115139632 -44460151 + AT_rich Low_complexity Low_complexity 1 58 0 1 1463 35820 47 2 3 chr3 115139633 115146032 -44453751 - L1Md_T LINE L1 -1 6584 90 1 1463 1070 204 13 88 chr3 115146033 115146340 -44453443 + Lx6 LINE L1 2260 2543 -3337 1 1463 342 225 22 135 chr3 115146358 115146543 -44453240 - L1_Mur3 LINE L1 -2450 3430 3267 1 1463 349 211 3 2 chr3 115146560 115146638 -44453145 + Lx6 LINE L1 2561 2640 -3240 1 1463 369 0 0 0 chr3 115146640 115146681 -44453102 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 1463 627 130 0 0 chr3 115146683 115146783 -44453000 + (GGGA)n Simple_repeat Simple_repeat 2 101 0 1 1463 9433 186 70 56 chr3 115146785 115147898 -44451885 + Lx6 LINE L1 2663 3707 -2173 1 1463 447 68 0 0 chr3 115147898 115147957 -44451826 + (CATA)n Simple_repeat Simple_repeat 4 62 0 1 1463 9433 186 70 56 chr3 115147957 115148358 -44451425 + Lx6 LINE L1 3708 4195 -1685 1 1463 389 0 59 0 chr3 115148358 115148409 -44451374 + (ATATG)n Simple_repeat Simple_repeat 3 56 0 1 1463 9433 186 70 56 chr3 115148409 115149614 -44450169 + Lx6 LINE L1 4196 5422 -458 1 1463 334 218 26 0 chr3 115149655 115149733 -44450050 + L1_Mur3 LINE L1 2561 2640 -3240 1 1463 351 0 0 0 chr3 115149735 115149774 -44450009 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 1463 676 119 17 0 chr3 115149774 115149892 -44449891 + (GA)n Simple_repeat Simple_repeat 1 120 0 1 1463 2440 156 34 41 chr3 115149893 115150454 -44449329 + L1_Mur3 LINE L1 2663 3219 -2661 1 1463 6792 215 64 15 chr3 115150454 115152256 -44447527 + Lx6 LINE L1 5424 7291 -169 1 1463 1889 109 91 54 chr3 115152274 115152605 -44447178 + RLTR26 LTR ERVK 1 343 -299 1 1463 2140 57 0 3 chr3 115152608 115152890 -44446893 - L1_Mus1 LINE L1 -146 6421 6141 1 1463 688 67 0 19 chr3 115152890 115152996 -44446787 + L1_Mus1 LINE L1 6461 6564 -3 1 1463 535 365 122 0 chr3 115153024 115153254 -44446529 - B4A SINE B4 -32 260 3 1 1463 1157 205 63 14 chr3 115153299 115153522 -44446261 + RLTR26 LTR ERVK 312 545 -97 1 1463 832 159 13 7 chr3 115153509 115153661 -44446122 + RLTR26 LTR ERVK 490 642 0 1 1463 234 174 0 0 chr3 115153673 115153719 -44446064 + (CA)n Simple_repeat Simple_repeat 1 46 0 1 1463 633 291 50 11 chr3 115153774 115153955 -44445828 + B3 SINE B2 2 189 -27 1 1463 29 28 0 0 chr3 115154134 115154170 -44445613 + AT_rich Low_complexity Low_complexity 1 36 0 1 1463 519 149 252 42 chr3 115154180 115154299 -44445484 + B1_Mus1 SINE Alu 5 148 0 1 1463 389 298 46 97 chr3 115154709 115154884 -44444899 + B4A SINE B4 127 292 0 1 1463 233 209 15 0 chr3 115154906 115154973 -44444810 + (CA)n Simple_repeat Simple_repeat 1 68 0 1 1463 3672 16 123 0 chr3 115155188 115155627 -44444156 + MT2_Mm LTR ERVL 1 493 0 1 1463 671 268 83 0 chr3 115156006 115156174 -44443609 + B3A SINE B2 2 183 -15 2 1463 23 0 0 0 chr3 115156192 115156215 -44443568 + AT_rich Low_complexity Low_complexity 1 23 0 2 1463 243 0 0 0 chr3 115156772 115156799 -44442984 + (CA)n Simple_repeat Simple_repeat 2 28 0 2 1463 378 0 0 0 chr3 115156799 115156840 -44442943 + (GA)n Simple_repeat Simple_repeat 2 43 0 2 1463 612 365 5 5 chr3 115157431 115157621 -44442162 + B4A SINE B4 30 219 -73 2 1463 441 35 0 0 chr3 115157695 115157711 -44442072 + (TG)n Simple_repeat Simple_repeat 1 16 0 2 1463 501 129 0 0 chr3 115157711 115157804 -44441979 + (TA)n Simple_repeat Simple_repeat 2 94 0 2 1463 441 35 0 0 chr3 115157804 115157844 -44441939 + (TG)n Simple_repeat Simple_repeat 1 40 0 2 1463 414 0 0 0 chr3 115158263 115158309 -44441474 + (CA)n Simple_repeat Simple_repeat 1 46 0 2 1463 364 304 140 37 chr3 115158330 115158494 -44441289 - B4 SINE B4 0 292 112 2 1463 24 0 0 0 chr3 115158536 115158560 -44441223 + AT_rich Low_complexity Low_complexity 1 24 0 2 1463 1112 286 40 122 chr3 115159517 115159859 -44439924 - MTEa LTR MaLR -10 369 60 2 1463 1654 189 25 8 chr3 115159859 115160212 -44439571 - RLTR15 LTR ERVK 0 359 1 2 1463 1112 286 40 122 chr3 115160212 115160271 -44439512 - MTEa LTR MaLR -320 59 1 2 1463 981 215 39 20 chr3 115160765 115160969 -44438814 + B3 SINE B2 2 209 -7 2 1463 395 378 47 21 chr3 115161153 115161388 -44438395 + MLT1F LTR MaLR 304 544 -4 2 1463 3322 84 37 0 chr3 115161454 115161917 -44437866 - L1_Mus3 LINE L1 -3 6635 6156 2 1463 234 0 0 0 chr3 115161953 115161979 -44437804 + (CA)n Simple_repeat Simple_repeat 1 26 0 2 1463 396 0 0 0 chr3 115162468 115162512 -44437271 + (GA)n Simple_repeat Simple_repeat 1 44 0 2 1463 420 289 168 0 chr3 115162513 115162662 -44437121 - B3A SINE B2 -24 174 1 2 1463 426 182 48 55 chr3 115163098 115163243 -44436540 - RMER1B Other Other -4 1062 919 2 1463 1406 261 155 53 chr3 115163400 115163690 -44436093 - RMER1B Other Other -156 910 535 2 1463 515 16 16 0 chr3 115163690 115163754 -44436029 + (TG)n Simple_repeat Simple_repeat 2 66 0 2 1463 1406 261 155 53 chr3 115163754 115164231 -44435552 - RMER1B Other Other -532 534 67 2 1463 239 226 0 19 chr3 115164231 115164285 -44435498 - RMER1B Other Other -973 93 41 2 1463 183 42 0 0 chr3 115165000 115165024 -44434759 + (GA)n Simple_repeat Simple_repeat 2 25 0 2 1463 346 331 76 8 chr3 115165313 115165444 -44434339 - B1F SINE Alu -9 140 1 2 1463 702 136 5 165 chr3 115167129 115167156 -44432627 - Lx LINE L1 -12 6642 6626 2 1463 4950 58 14 8 chr3 115167156 115167801 -44431982 - L1_Mus1 LINE L1 0 6567 5919 2 1463 702 136 5 165 chr3 115167801 115167985 -44431798 - Lx LINE L1 -29 6625 6465 2 1463 927 82 0 0 chr3 115168175 115168297 -44431486 + B1_Mus1 SINE Alu 22 143 -5 2 1463 1452 44 0 0 chr3 115168297 115168477 -44431306 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 2 1463 767 263 31 21 chr3 115169176 115169370 -44430413 - B4A SINE B4 0 292 97 2 1463 669 287 131 19 chr3 115169401 115169966 -44429817 - Lx8 LINE L1 -5 7468 6841 2 1463 381 336 0 8 chr3 115170068 115170188 -44429595 + B3A SINE B2 64 182 -16 2 1463 23 68 0 0 chr3 115171247 115171291 -44428492 + AT_rich Low_complexity Low_complexity 1 44 0 2 1463 1057 162 17 0 chr3 115171471 115171621 -44428162 + B2_Mm2 SINE B2 4 153 -42 2 1463 450 0 0 0 chr3 115171621 115171671 -44428112 + (TAA)n Simple_repeat Simple_repeat 3 52 0 2 1463 1057 162 17 0 chr3 115171671 115171699 -44428084 + B2_Mm2 SINE B2 154 184 -11 2 1463 694 303 29 0 chr3 115171740 115171915 -44427868 - B3A SINE B2 -18 180 1 2 1463 676 273 98 35 chr3 115173595 115173880 -44425903 - Lx8 LINE L1 -1 7472 7170 2 1463 429 293 0 17 chr3 115173999 115174117 -44425666 + PB1D10 SINE Alu 2 117 0 2 1463 504 117 123 7 chr3 115174360 115174506 -44425277 - Lx9 LINE L1 -1 7643 7481 2 1463 388 74 110 12 chr3 115174524 115174606 -44425177 - Lx9 LINE L1 -130 7514 7425 2 1463 2528 301 89 15 chr3 115174606 115175604 -44424179 + Lx8 LINE L1 6215 7286 -187 2 1463 5622 132 60 58 chr3 115175807 115177110 -44422673 + Lx2 LINE L1 5554 6990 -18 2 1463 936 189 38 16 chr3 115177125 115177308 -44422475 + RMER6B LTR ERVK 275 461 0 2 1463 533 246 7 15 chr3 115177334 115177470 -44422313 - L1_Mur3 LINE L1 -1065 4815 4681 2 1463 4922 96 13 0 chr3 115177472 115178551 -44421232 + MusHAL1 LINE L1 11 1105 -2248 2 1463 643 358 61 15 chr3 115178551 115178812 -44420971 + MER21B LTR ERV1 514 786 -77 2 1463 228 111 0 0 chr3 115179586 115179622 -44420161 + (TTA)n Simple_repeat Simple_repeat 1 36 0 2 1463 369 370 68 0 chr3 115179683 115179875 -44419908 + MLT2B4 LTR ERVL 4 208 -348 2 1463 2140 112 53 8 chr3 115180813 115181172 -44418611 + Lx LINE L1 6280 6654 0 2 1463 335 260 211 0 chr3 115181196 115181319 -44418464 + RSINE1 SINE B4 8 156 -9 2 1463 639 65 0 0 chr3 115181331 115181424 -44418359 + (CA)n Simple_repeat Simple_repeat 1 93 0 2 1463 1037 294 168 29 chr3 115182266 115182982 -44416801 + L1MC3 LINE L1 6805 7619 -166 2 1463 522 0 0 0 chr3 115183059 115183117 -44416666 + (TG)n Simple_repeat Simple_repeat 2 59 0 2 1463 510 269 28 56 chr3 115183127 115183269 -44416514 + RSINE1 SINE B4 27 164 -1 2 1463 397 262 113 0 chr3 115184037 115184178 -44415605 - MER110 LTR ERV1 -4 487 331 2 1463 1373 292 68 34 chr3 115184310 115185011 -44414772 - Lx8 LINE L1 -12 7461 6737 2 1463 286 352 19 9 chr3 115185092 115185198 -44414585 - MER110 LTR ERV1 -170 321 215 2 1463 7279 160 22 25 chr3 115185198 115185328 -44414455 - Lx2B LINE L1 -2 6998 6878 2 1463 3438 25 2 0 chr3 115185328 115185723 -44414060 - MTA_Mm LTR MaLR 0 396 1 2 1463 9091 33 4 1 chr3 115185723 115186816 -44412967 - MTA_Mm-int LTR MaLR 0 1098 3 2 1463 3628 11 136 0 chr3 115186820 115187254 -44412529 - MT2_Mm LTR ERVL 0 493 1 2 1463 7279 162 20 24 chr3 115187254 115188672 -44411111 - Lx2B LINE L1 -123 6877 5450 2 1463 532 283 92 0 chr3 115188677 115188850 -44410933 - MER110 LTR ERV1 -282 209 21 2 1463 273 329 0 68 chr3 115188933 115189021 -44410762 + MLT1E1A LTR MaLR 18 99 -555 2 1463 352 348 16 42 chr3 115189254 115189443 -44410340 + MLT1E1A LTR MaLR 495 678 -2 2 1463 3369 42 10 0 chr3 115190895 115191302 -44408481 + L1Md_F2 LINE L1 6172 6582 0 2 1463 329 328 35 0 chr3 115191558 115191674 -44408109 + ID_B1 SINE B4 6 125 -99 2 1463 341 116 0 0 chr3 115191685 115191754 -44408029 - MT2A LTR ERVL 0 533 465 2 1463 277 103 49 49 chr3 115191768 115191850 -44407933 + (TATATG)n Simple_repeat Simple_repeat 5 86 0 2 1463 707 0 12 0 chr3 115191850 115191933 -44407850 + (TAGA)n Simple_repeat Simple_repeat 2 85 0 2 1463 1802 229 60 21 chr3 115191948 115192367 -44407416 - MT2A LTR ERVL -98 435 1 2 1463 24 0 0 0 chr3 115192432 115192456 -44407327 + AT_rich Low_complexity Low_complexity 1 24 0 2 1463 22 35 0 0 chr3 115192926 115192955 -44406828 + AT_rich Low_complexity Low_complexity 1 29 0 2 1463 626 296 5 43 chr3 115193658 115193845 -44405938 + B3A SINE B2 1 180 -18 2 1463 1248 224 77 30 chr3 115193878 115194214 -44405569 - Lx6 LINE L1 -11 7449 7098 2 1463 792 323 16 5 chr3 115194228 115194421 -44405362 + B3 SINE B2 1 195 -21 2 1463 276 30 0 0 chr3 115194777 115194810 -44404973 + (CA)n Simple_repeat Simple_repeat 2 34 0 2 1463 284 323 11 59 chr3 115195118 115195333 -44404450 - LTR41B LTR ERVL -566 202 1 2 1463 3225 43 8 0 chr3 115196129 115196522 -44403261 + MTA_Mm LTR MaLR 1 396 0 2 1463 705 24 0 0 chr3 115196573 115196656 -44403127 + (GA)n Simple_repeat Simple_repeat 2 84 0 2 1463 906 242 192 11 chr3 115196880 115197296 -44402487 + L1MB3 LINE L1 5593 6065 -106 2 1463 595 156 0 18 chr3 115197543 115197654 -44402129 + Lx3C LINE L1 6868 6976 0 2 1463 1085 230 0 0 chr3 115197676 115197872 -44401911 + B3 SINE B2 1 196 -20 2 1463 240 221 16 16 chr3 115197897 115198021 -44401762 + GA-rich Low_complexity Low_complexity 4 127 0 2 1463 272 217 0 118 chr3 115198026 115198094 -44401689 + B1F SINE Alu 40 99 -50 2 1463 619 342 67 37 chr3 115198091 115198495 -44401288 - MT2A LTR ERVL -117 416 1 2 1463 1236 326 80 18 chr3 115199475 115199978 -44399805 + MLT1F2 LTR MaLR 15 548 -12 2 1463 378 0 0 0 chr3 115200395 115200437 -44399346 + (A)n Simple_repeat Simple_repeat 1 42 0 2 1463 3364 75 57 0 chr3 115201243 115201697 -44398086 + L1_Mus1 LINE L1 6088 6567 0 2 1463 279 0 0 0 chr3 115201736 115201767 -44398016 + (T)n Simple_repeat Simple_repeat 1 31 0 2 1463 1125 82 0 0 chr3 115201770 115201917 -44397866 - B1_Mus2 SINE Alu 0 147 1 2 1463 6699 206 56 63 chr3 115202044 115202510 -44397273 - Lx6 LINE L1 -4 7456 6964 2 1463 544 197 36 49 chr3 115202510 115202652 -44397131 + B3 SINE B2 41 177 -18 2 1463 6699 206 56 63 chr3 115202652 115204250 -44395533 - Lx6 LINE L1 -4 6963 5269 2 1463 384 22 0 0 chr3 115205049 115205094 -44394689 + (CA)n Simple_repeat Simple_repeat 2 46 0 2 1463 23 54 0 0 chr3 115205234 115205271 -44394512 + AT_rich Low_complexity Low_complexity 1 37 0 2 1463 1159 83 0 0 chr3 115205271 115205416 -44394367 + B1_Mus2 SINE Alu 1 145 -2 2 1463 1125 299 21 15 chr3 115205688 115206014 -44393769 - Lx5 LINE L1 -3 7047 6720 2 1463 2439 187 74 4 chr3 115206048 115206605 -44393178 - Lx6 LINE L1 -608 5272 4677 2 1463 1923 204 105 28 chr3 115206601 115207205 -44392578 - Lx6 LINE L1 -2610 3270 2633 2 1463 441 0 0 0 chr3 115207205 115207254 -44392529 + (TATG)n Simple_repeat Simple_repeat 4 52 0 2 1463 1923 204 105 28 chr3 115207254 115207295 -44392488 - Lx6 LINE L1 -3248 2632 2577 2 1463 1657 181 60 58 chr3 115207293 115207594 -44392189 - Lx6 LINE L1 -6419 1309 1015 2 1463 248 0 0 30 chr3 115207594 115207627 -44392156 + (TTG)n Simple_repeat Simple_repeat 2 33 0 2 1463 1657 181 60 58 chr3 115207627 115207772 -44392011 - Lx6 LINE L1 -6714 1014 862 2 1463 485 257 19 26 chr3 115207792 115207948 -44391835 - Lx6 LINE L1 -7190 538 384 2 1463 3210 195 39 58 chr3 115207958 115208351 -44391432 + RMER6D LTR ERVK 3 368 -352 2 1463 387 0 0 0 chr3 115208351 115208394 -44391389 + (TG)n Simple_repeat Simple_repeat 1 43 0 2 1463 3210 195 39 58 chr3 115208394 115208720 -44391063 + RMER6D LTR ERVK 369 708 -12 2 1463 1044 275 87 23 chr3 115208733 115209250 -44390533 - Lx6 LINE L1 -7106 622 73 2 1463 1031 182 5 0 chr3 115209280 115209301 -44390482 - Lx2 LINE L1 -335 6665 6645 2 1463 1330 122 42 18 chr3 115209301 115209518 -44390265 - Lx2 LINE L1 0 6997 6776 2 1463 1170 108 6 0 chr3 115209518 115209688 -44390095 - Lx2 LINE L1 -356 6644 6474 2 1463 293 273 0 29 chr3 115210002 115210070 -44389713 + ID4_ SINE ID 15 80 -3 2 1463 1052 88 15 0 chr3 115210940 115211077 -44388706 + B1_Mus2 SINE Alu 2 140 -7 2 1463 954 171 0 0 chr3 115211083 115211259 -44388524 + GA-rich Low_complexity Low_complexity 3 178 0 2 1463 203 302 0 16 chr3 115211277 115211341 -44388442 + GA-rich Low_complexity Low_complexity 3 65 0 2 1463 770 249 96 0 chr3 115211343 115211520 -44388263 + ID_B1 SINE B4 18 211 -13 2 1463 324 0 0 0 chr3 115211882 115211918 -44387865 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 2 1463 448 286 30 0 chr3 115211918 115212051 -44387732 - B1F1 SINE Alu -11 138 2 3 1463 251 256 12 12 chr3 115212057 115212140 -44387643 + (TGG)n Simple_repeat Simple_repeat 3 85 0 3 182 636 292 22 0 chr3 115212153 115212290 -44387493 - ID_B1 SINE B4 -1 223 84 3 1464 201 393 12 0 chr3 115213027 115213111 -44386672 + L2b LINE L2 3290 3374 -1 3 1464 240 277 123 25 chr3 115213509 115213631 -44386152 - MLT2B3 LTR ERVL -417 137 4 3 1464 355 320 74 41 chr3 115214003 115214247 -44385536 - L1ME3B LINE L1 -75 6165 5914 3 1464 325 274 44 0 chr3 115214281 115214394 -44385389 - L1ME3B LINE L1 -333 5831 5714 3 1464 227 286 81 12 chr3 115214751 115214924 -44384859 - L1ME3B LINE L1 -813 5333 5149 3 1464 284 218 98 10 chr3 115214993 115215095 -44384688 - L1ME3B LINE L1 -1133 5013 4903 3 1464 287 274 28 0 chr3 115215313 115215419 -44384364 - L1MC LINE L1 -1541 4605 4497 3 1464 519 353 77 66 chr3 115215626 115215865 -44383918 - L1ME3B LINE L1 -1980 4166 3940 3 1464 1831 183 58 13 chr3 115215865 115216241 -44383542 - ORR1B1 LTR MaLR 0 394 2 3 1464 519 353 77 66 chr3 115216241 115216550 -44383233 - L1ME3B LINE L1 -2207 3939 3612 3 1464 980 252 9 5 chr3 115216588 115216799 -44382984 + ID_B1 SINE B4 7 218 -6 3 1464 367 308 77 53 chr3 115216802 115217049 -44382734 - L1ME3B LINE L1 -2596 3550 3298 3 1464 936 311 121 24 chr3 115217367 115217821 -44381962 + BLACKJACK DNA AcHobo 447 944 -2000 3 1464 255 294 56 47 chr3 115217911 115218043 -44381740 - MTEb LTR MaLR -16 392 276 3 1464 619 314 107 58 chr3 115218296 115218624 -44381159 + ORR1E LTR MaLR 1 344 -15 3 1464 660 312 44 64 chr3 115218667 115219102 -44380681 + BLACKJACK DNA AcHobo 1065 1490 -1454 3 1464 940 323 92 28 chr3 115219278 115219603 -44380180 - MTEa LTR MaLR -33 346 1 3 1464 396 95 12 23 chr3 115219631 115219717 -44380066 + (GA)n Simple_repeat Simple_repeat 2 86 0 3 1464 205 212 37 24 chr3 115219718 115219800 -44379983 + (TAGA)n Simple_repeat Simple_repeat 3 85 0 3 1464 675 222 83 12 chr3 115219869 115220033 -44379750 - MTD LTR MaLR -14 405 248 3 1464 1024 221 23 5 chr3 115220032 115220250 -44379533 - MTD LTR MaLR -90 329 108 3 1464 2889 208 160 30 chr3 115220256 115221028 -44378755 + RMER19B LTR ERVK 3 881 -21 3 1464 2929 65 5 13 chr3 115221028 115221416 -44378367 + L1_Mus1 LINE L1 6181 6565 -2 3 1464 2889 208 160 30 chr3 115221416 115221430 -44378353 + RMER19B LTR ERVK 882 891 -11 3 1464 419 243 56 37 chr3 115222075 115222182 -44377601 - MTD LTR MaLR -310 109 1 3 1464 26 0 0 0 chr3 115222246 115222272 -44377511 + AT_rich Low_complexity Low_complexity 1 26 0 3 1464 2716 172 15 19 chr3 115223007 115223533 -44376250 - RLTR28 LTR ERVL 0 524 1 3 1464 236 77 0 25 chr3 115223706 115223732 -44376051 + (TTTC)n Simple_repeat Simple_repeat 3 28 0 3 1464 1017 153 0 0 chr3 115223732 115223908 -44375875 + CT-rich Low_complexity Low_complexity 3 178 0 3 1464 236 77 0 25 chr3 115223908 115223921 -44375862 + (TTTC)n Simple_repeat Simple_repeat 2 14 0 3 1464 2445 219 93 54 chr3 115223923 115224667 -44375116 - RMER12 LTR ERVK -549 773 1 3 1464 2493 91 5 24 chr3 115224675 115225047 -44374736 - Lx LINE L1 -3 6651 6287 3 1464 399 145 0 0 chr3 115225222 115225291 -44374492 + (CA)n Simple_repeat Simple_repeat 2 70 0 3 1464 311 262 144 15 chr3 115225662 115225794 -44373989 + B1F SINE Alu 1 149 0 3 1464 184 30 29 29 chr3 115225796 115225830 -44373953 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 3 1464 373 310 8 41 chr3 115225952 115226073 -44373710 + ID_B1 SINE B4 104 220 -4 3 1464 659 308 88 48 chr3 115227451 115227782 -44372001 + ORR1E LTR MaLR 1 344 -15 3 1464 21 0 0 0 chr3 115227834 115227855 -44371928 + AT_rich Low_complexity Low_complexity 1 21 0 3 1464 949 285 29 18 chr3 115228591 115228866 -44370917 + B4A SINE B4 1 278 -14 3 1464 276 77 0 0 chr3 115228889 115228928 -44370855 + (CA)n Simple_repeat Simple_repeat 2 40 0 3 1464 573 227 0 9 chr3 115229262 115229373 -44370410 + B1_Mur2 SINE Alu 5 114 -35 3 1464 183 80 0 0 chr3 115229374 115229399 -44370384 + (GGAA)n Simple_repeat Simple_repeat 3 27 0 3 1464 351 266 120 21 chr3 115229399 115229541 -44370242 + HAL1-3A_ME LINE L1 2284 2439 -419 3 1464 748 237 15 78 chr3 115229622 115229828 -44369955 - B3A SINE B2 -4 194 2 3 1464 2882 311 81 16 chr3 115230711 115232140 -44367643 + Lx8 LINE L1 5816 7336 -137 3 1464 953 279 126 76 chr3 115232158 115232833 -44366950 - Lx9 LINE L1 -24 7620 6912 3 1464 315 333 10 0 chr3 115232847 115232943 -44366840 - ID_B1 SINE B4 -127 97 1 3 1464 230 320 189 0 chr3 115236089 115236211 -44363572 + MER5A DNA MER1_type 45 189 0 3 1464 337 272 126 16 chr3 115236431 115236558 -44363225 - B4A SINE B4 -78 214 74 3 1464 1383 207 157 15 chr3 115236577 115236915 -44362868 - ORR1B1 LTR MaLR -8 386 1 3 1464 848 239 2 16 chr3 115236980 115237188 -44362595 - B3 SINE B2 -2 196 1 3 1464 801 328 75 32 chr3 115237372 115237813 -44361970 + MT2A LTR ERVL 5 464 -69 3 1464 468 128 0 0 chr3 115237817 115237895 -44361888 + (TA)n Simple_repeat Simple_repeat 1 78 0 3 1464 3694 118 2 9 chr3 115237895 115238656 -44361127 - Lx2A LINE L1 -875 6133 5375 3 1464 198 0 0 0 chr3 115238661 115238683 -44361100 + (TG)n Simple_repeat Simple_repeat 1 22 0 3 1464 215 87 86 14 chr3 115238686 115238756 -44361027 + (TA)n Simple_repeat Simple_repeat 2 76 0 3 1464 405 0 0 0 chr3 115241071 115241116 -44358667 + (TG)n Simple_repeat Simple_repeat 1 45 0 3 1464 1016 259 34 15 chr3 115241155 115241421 -44358362 - B4A SINE B4 -17 275 5 3 1464 315 0 0 0 chr3 115242122 115242157 -44357626 + (TG)n Simple_repeat Simple_repeat 2 36 0 3 1464 351 0 0 0 chr3 115242256 115242295 -44357488 + (TG)n Simple_repeat Simple_repeat 2 40 0 3 1464 2086 157 56 3 chr3 115242316 115242674 -44357109 - ORR1C1 LTR MaLR 0 378 2 3 1464 1932 314 119 4 chr3 115242773 115243594 -44356189 - Lx8 LINE L1 -267 7206 6291 3 1464 381 162 0 59 chr3 115243654 115243772 -44356011 + (TTA)n Simple_repeat Simple_repeat 1 111 0 3 1464 1648 253 32 28 chr3 115243795 115244394 -44355389 + L1_Rod LINE L1 5243 5843 -4 3 1464 858 257 21 5 chr3 115244782 115244970 -44354813 + B3 SINE B2 1 191 -25 3 1464 236 251 84 0 chr3 115245001 115245083 -44354700 + PB1D10 SINE Alu 33 123 -26 3 1464 836 320 25 36 chr3 115245782 115246061 -44353722 - B4A SINE B4 -16 276 1 3 1464 294 29 0 0 chr3 115246886 115246921 -44352862 + (CCTA)n Simple_repeat Simple_repeat 2 36 0 3 1464 519 118 58 17 chr3 115246924 115247097 -44352686 + (CA)n Simple_repeat Simple_repeat 1 180 0 3 1464 323 311 32 32 chr3 115247266 115247452 -44352331 + MER53 DNA hAT 7 192 -1 3 1464 267 224 69 103 chr3 115247612 115247786 -44351997 - L1M3 LINE L1 -912 5231 5064 3 1464 326 118 43 0 chr3 115247928 115248021 -44351762 + (TA)n Simple_repeat Simple_repeat 1 97 0 3 1464 498 301 36 22 chr3 115248097 115248236 -44351547 + B1F SINE Alu 8 148 -1 3 1464 571 259 39 34 chr3 115248247 115248455 -44351328 - L1M3 LINE L1 -1290 4850 4642 3 1464 240 167 0 0 chr3 115249676 115249724 -44350059 + (TAGG)n Simple_repeat Simple_repeat 3 50 0 3 1464 793 276 33 22 chr3 115249797 115250071 -44349712 + B4A SINE B4 1 277 -15 3 1464 4854 221 25 19 chr3 115250530 115251459 -44348324 + RMER1B Other Other 1 935 -131 3 1464 388 18 0 51 chr3 115251459 115251518 -44348265 + (GTTTG)n Simple_repeat Simple_repeat 2 57 0 3 1464 4854 221 25 19 chr3 115251518 115251647 -44348136 + RMER1B Other Other 936 1066 0 3 1464 274 326 84 3 chr3 115251699 115251864 -44347919 - MER34A LTR ERV1 0 571 364 3 1464 491 344 54 5 chr3 115251965 115252187 -44347596 + MLT1A1 LTR MaLR 94 326 -82 3 1464 427 271 114 62 chr3 115252171 115252364 -44347419 - MER34A LTR ERV1 -361 210 8 3 1464 198 0 0 0 chr3 115252384 115252406 -44347377 + (TA)n Simple_repeat Simple_repeat 2 23 0 3 1464 306 0 0 0 chr3 115252406 115252439 -44347344 + (TG)n Simple_repeat Simple_repeat 1 34 0 3 1464 514 254 76 0 chr3 115252599 115252717 -44347066 - B1F SINE Alu -21 128 2 3 1464 234 276 36 125 chr3 115252617 115252729 -44347054 - MT2B LTR ERVL -347 254 153 3 1464 254 245 0 0 chr3 115252966 115253015 -44346768 + ID4_ SINE ID 22 70 -13 3 1464 186 276 103 26 chr3 115253062 115253140 -44346643 - L2 LINE L2 -500 2919 2836 3 1464 256 343 9 28 chr3 115253204 115253312 -44346471 - Tigger5 DNA MER2_type -9 2397 2292 3 1464 310 364 48 27 chr3 115253309 115253456 -44346327 - Tigger5 DNA MER2_type -2164 242 93 3 1464 931 215 65 20 chr3 115253501 115253700 -44346083 - B3 SINE B2 -4 212 5 3 1464 847 290 99 22 chr3 115253783 115254195 -44345588 - MLT1B-int LTR MaLR -927 444 1 3 1464 350 354 5 57 chr3 115254238 115254430 -44345353 - MLT1B LTR MaLR -44 346 165 3 1464 339 216 32 21 chr3 115254355 115254544 -44345239 + RMER17D LTR ERVK 257 447 -442 3 1464 298 358 93 0 chr3 115254488 115254692 -44345091 - MLT1B LTR MaLR -166 224 2 3 1464 318 87 0 0 chr3 115255987 115256033 -44343750 + (TG)n Simple_repeat Simple_repeat 2 47 0 3 1464 207 291 54 80 chr3 115256240 115256352 -44343431 - MIR3 SINE MIR -15 193 85 3 1464 351 0 0 0 chr3 115257871 115257910 -44341873 + (A)n Simple_repeat Simple_repeat 1 39 0 3 1464 801 198 123 0 chr3 115257924 115258111 -44341672 + B3 SINE B2 4 213 -3 3 1464 186 234 0 113 chr3 115258438 115258491 -44341292 - MIRm SINE MIR -24 252 206 3 1464 4305 68 42 7 chr3 115258520 115259098 -44340685 - L1Md_F2 LINE L1 0 6582 5985 3 1464 237 262 96 10 chr3 115260141 115260245 -44339538 + Lx8 LINE L1 7353 7465 -8 3 1464 25 51 0 0 chr3 115261032 115261071 -44338712 + AT_rich Low_complexity Low_complexity 1 39 0 3 1464 245 311 95 100 chr3 115261195 115261395 -44338388 + MLT1D LTR MaLR 92 290 -215 3 1464 273 338 0 0 chr3 115261361 115261429 -44338354 + ID_B1 SINE B4 120 187 -37 3 1464 396 0 0 0 chr3 115261432 115261476 -44338307 + (TC)n Simple_repeat Simple_repeat 2 45 0 3 1464 423 0 0 0 chr3 115261476 115261522 -44338261 + (TG)n Simple_repeat Simple_repeat 2 48 0 3 1464 198 306 90 77 chr3 115262213 115262369 -44337414 - MIRm SINE MIR -98 178 21 3 1464 237 33 0 0 chr3 115262677 115262707 -44337076 + (CA)n Simple_repeat Simple_repeat 1 30 0 3 1464 1168 263 72 20 chr3 115263648 115263997 -44335786 + MTE2b LTR MaLR 13 379 0 3 1464 228 67 0 0 chr3 115265659 115265689 -44334094 + (A)n Simple_repeat Simple_repeat 1 30 0 3 1464 5448 82 86 5 chr3 115266060 115267565 -44332218 + L1VL2 LINE L1 176 1820 -1795 4 1464 24 32 0 0 chr3 115268855 115268886 -44330897 + AT_rich Low_complexity Low_complexity 1 31 0 4 1464 405 0 0 0 chr3 115269015 115269060 -44330723 + (TG)n Simple_repeat Simple_repeat 1 45 0 4 1464 678 85 0 0 chr3 115269071 115269165 -44330618 + (GGA)n Simple_repeat Simple_repeat 2 95 0 4 1464 1264 211 110 41 chr3 115269856 115270201 -44329582 + ORR1D2 LTR MaLR 2 370 0 4 1464 258 288 0 0 chr3 115270787 115270842 -44328941 + MER5A DNA MER1_type 22 76 -113 4 1464 675 253 31 25 chr3 115270842 115271004 -44328779 + RSINE1 SINE B4 3 165 0 4 1464 645 331 0 57 chr3 115271149 115271341 -44328442 - B4A SINE B4 0 292 112 4 1464 3072 232 63 10 chr3 115271811 115272626 -44327157 - Lx2B LINE L1 0 7000 6143 4 1464 966 178 65 50 chr3 115272634 115272835 -44326948 - URR1B DNA MER1_type -21 204 1 4 1464 207 0 0 0 chr3 115272985 115273008 -44326775 + (TG)n Simple_repeat Simple_repeat 2 24 0 4 1464 941 158 20 0 chr3 115273253 115273399 -44326384 + B1_Mur3 SINE Alu 1 149 0 4 1464 590 80 0 22 chr3 115273399 115273489 -44326294 + (GAAA)n Simple_repeat Simple_repeat 1 88 0 4 1464 267 257 40 26 chr3 115273712 115273788 -44325995 + MLT1A0 LTR MaLR 276 352 -13 4 1464 22 0 0 0 chr3 115273922 115273944 -44325839 + AT_rich Low_complexity Low_complexity 1 22 0 4 1464 675 0 0 0 chr3 115274013 115274088 -44325695 + (TAGA)n Simple_repeat Simple_repeat 4 78 0 4 1464 850 311 22 93 chr3 115275063 115275375 -44324408 + B4A SINE B4 1 290 -2 4 1464 425 282 67 67 chr3 115275883 115276107 -44323676 + L1ME2 LINE L1 4824 5047 -1099 4 1464 2581 196 84 38 chr3 115276158 115276446 -44323337 - RMER20B LTR ERVK -25 602 289 4 1464 1487 42 0 21 chr3 115276446 115276639 -44323144 - B2_Mm2 SINE B2 -5 190 2 4 1464 2581 196 84 38 chr3 115276639 115276906 -44322877 - RMER20B LTR ERVK -339 288 21 4 1464 438 307 43 24 chr3 115276911 115277118 -44322665 + MLT1D LTR MaLR 4 214 -291 4 1464 282 304 106 14 chr3 115277200 115277315 -44322468 + MLT1D LTR MaLR 387 615 -9 4 1464 22 56 0 0 chr3 115277375 115277411 -44322372 + AT_rich Low_complexity Low_complexity 1 36 0 4 1464 674 274 127 0 chr3 115277656 115277853 -44321930 + ID_B1 SINE B4 1 222 -2 4 1464 266 291 82 0 chr3 115277857 115277991 -44321792 + L1MC LINE L1 5492 5636 -2149 4 1464 308 273 0 0 chr3 115278042 115278119 -44321664 + ID4 SINE ID 1 77 -6 4 1464 442 324 32 39 chr3 115278141 115278571 -44321212 + L1ME2 LINE L1 5652 6080 -99 4 1464 591 168 48 211 chr3 115278647 115278813 -44320970 - B3A SINE B2 0 198 48 4 1464 22 35 0 0 chr3 115278927 115278956 -44320827 + AT_rich Low_complexity Low_complexity 1 29 0 4 1464 677 240 122 25 chr3 115279100 115279297 -44320486 + B3 SINE B2 1 216 0 4 1464 372 324 0 9 chr3 115279849 115279961 -44319822 + PB1D7 SINE Alu 3 113 -7 4 1464 247 248 75 47 chr3 115280107 115280213 -44319570 + PB1D10 SINE Alu 4 112 -5 4 1464 289 296 11 22 chr3 115280654 115280744 -44319039 + PB1D10 SINE Alu 2 90 -27 4 1464 327 315 31 8 chr3 115280817 115280945 -44318838 + MLT1D LTR MaLR 343 473 -32 4 1464 702 96 0 0 chr3 115282276 115282380 -44317403 + (GGAA)n Simple_repeat Simple_repeat 3 106 0 4 1464 501 60 60 0 chr3 115282383 115282467 -44317316 + (AGGGGG)n Simple_repeat Simple_repeat 3 91 0 4 1464 1502 0 0 11 chr3 115282467 115282642 -44317141 + (GGGAGA)n Simple_repeat Simple_repeat 3 175 0 4 1464 198 103 0 0 chr3 115283825 115283854 -44315929 + (A)n Simple_repeat Simple_repeat 1 29 0 4 1464 180 0 0 0 chr3 115284122 115284142 -44315641 + (TTCTG)n Simple_repeat Simple_repeat 3 22 0 4 1464 1853 159 112 16 chr3 115284356 115284732 -44315051 + MTC LTR MaLR 1 412 -9 4 1464 1537 222 23 50 chr3 115284737 115285136 -44314647 + MTC-int LTR MaLR 1 388 -870 4 1464 4246 182 94 61 chr3 115285160 115286144 -44313639 + RMER1B Other Other 50 1066 0 4 1464 3472 189 71 14 chr3 115286160 115286931 -44312852 + MTC-int LTR MaLR 444 1258 0 4 1464 342 166 9 9 chr3 115286932 115287003 -44312780 + MTC LTR MaLR 2 72 -335 4 1464 1987 158 22 8 chr3 115287515 115287880 -44311903 + MTC LTR MaLR 52 421 0 4 1464 198 118 0 0 chr3 115288092 115288126 -44311657 + (CAA)n Simple_repeat Simple_repeat 2 35 0 4 1464 3128 158 8 52 chr3 115288188 115288788 -44310995 + RMER15 LTR ERVL 2 575 0 4 1464 1579 247 112 22 chr3 115288790 115289290 -44310493 - Lx7 LINE L1 -384 7312 6768 4 1464 235 318 24 0 chr3 115289649 115289734 -44310049 + LTR40a LTR ERVL 31 117 -402 4 1464 717 140 0 0 chr3 115289825 115289989 -44309794 + (TC)n Simple_repeat Simple_repeat 1 164 0 4 1464 459 0 0 0 chr3 115289989 115290040 -44309743 + (TG)n Simple_repeat Simple_repeat 2 52 0 4 1464 304 301 138 26 chr3 115290045 115290161 -44309622 - RSINE1 SINE B4 -35 130 2 4 1464 267 248 138 37 chr3 115290291 115290400 -44309383 + LTR40a LTR ERVL 387 506 -13 4 1464 423 0 0 0 chr3 115295674 115295721 -44304062 + (TG)n Simple_repeat Simple_repeat 2 48 0 4 1464 461 311 47 0 chr3 115295724 115295872 -44303911 + RSINE1 SINE B4 11 165 0 4 1464 441 0 0 0 chr3 115295886 115295935 -44303848 + (CA)n Simple_repeat Simple_repeat 2 50 0 4 1464 259 347 10 0 chr3 115296059 115296157 -44303626 + MTE2b LTR MaLR 4 102 -277 4 1464 826 223 67 18 chr3 115296159 115296383 -44303400 + MTE2b LTR MaLR 68 302 -77 4 1464 396 289 18 0 chr3 115296392 115296506 -44303277 - MLT1A1 LTR MaLR -66 342 227 4 1464 258 178 34 19 chr3 115297514 115297586 -44302197 + ID4 SINE ID 2 79 -4 4 1464 388 318 0 9 chr3 115297621 115297732 -44302051 - PB1D7 SINE Alu -9 111 2 4 1464 4533 33 4 7 chr3 115298024 115298566 -44301217 + L1Md_F3 LINE L1 6045 6584 0 4 1464 1238 27 0 26 chr3 115299784 115299935 -44299848 - B1_Mm SINE Alu 0 147 1 4 1464 1369 51 6 0 chr3 115300027 115300204 -44299579 + L1_Mus1 LINE L1 6390 6567 0 4 1464 187 291 18 0 chr3 115300527 115300582 -44299201 + MIRb SINE MIR 123 178 -90 4 1464 250 313 142 32 chr3 115300765 115300920 -44298863 - MLT1J LTR MaLR -170 342 171 4 1464 250 256 66 58 chr3 115302425 115302562 -44297221 - ORR1E LTR MaLR -221 138 1 4 1464 414 54 13 26 chr3 115303006 115303082 -44296701 + (TTTTG)n Simple_repeat Simple_repeat 1 75 0 4 1464 1167 76 7 0 chr3 115303082 115303227 -44296556 - B1_Mus2 SINE Alu 0 147 2 4 1464 443 294 82 41 chr3 115304391 115304710 -44295073 + L1MB4 LINE L1 5788 6119 -61 4 1464 341 344 41 27 chr3 115304791 115305153 -44294630 + Lx8 LINE L1 5808 6179 -1294 4 1464 1375 249 111 10 chr3 115305294 115305872 -44293911 + Lx8 LINE L1 6227 6862 -611 4 1464 24 32 0 0 chr3 115305881 115305912 -44293871 + AT_rich Low_complexity Low_complexity 1 31 0 4 1464 327 273 23 0 chr3 115306115 115306203 -44293580 + PB1D10 SINE Alu 1 90 -27 4 1464 459 0 0 0 chr3 115307655 115307706 -44292077 + (CA)n Simple_repeat Simple_repeat 2 52 0 4 1464 188 354 122 34 chr3 115308253 115308458 -44291325 - L3 LINE CR1 -2161 2328 2106 4 1464 21 0 0 0 chr3 115308619 115308640 -44291143 + AT_rich Low_complexity Low_complexity 1 21 0 4 1464 671 261 37 93 chr3 115308703 115308973 -44290810 - MLT1B LTR MaLR -56 334 80 4 1464 2436 185 27 151 chr3 115309315 115310014 -44289769 + ORR1B1-int LTR MaLR 1317 1884 -79 4 1464 2020 149 9 88 chr3 115310014 115310433 -44289350 + ORR1B1 LTR MaLR 1 386 -8 4 1464 251 276 54 27 chr3 115310955 115311104 -44288679 + L1_Mur1 LINE L1 1467 1619 -4267 4 1464 243 0 0 0 chr3 115311540 115311567 -44288216 + (TATG)n Simple_repeat Simple_repeat 2 28 0 4 1464 520 257 170 16 chr3 115311924 115312118 -44287665 - ID_B1 SINE B4 0 224 1 4 1464 533 331 17 24 chr3 115312802 115313093 -44286690 + B4A SINE B4 3 291 -1 4 1464 213 39 0 0 chr3 115313111 115313137 -44286646 + (CA)n Simple_repeat Simple_repeat 1 26 0 4 1464 306 0 0 0 chr3 115313639 115313673 -44286110 + (TA)n Simple_repeat Simple_repeat 2 35 0 4 1464 266 200 47 0 chr3 115314389 115314474 -44285309 - ERVL-E-int LTR ERVL -219 5538 5450 4 1464 1018 315 33 6 chr3 115314478 115314810 -44284973 + MTEb LTR MaLR 2 342 -37 4 1464 2669 343 65 32 chr3 115314867 115316250 -44283533 - ERVL-E-int LTR ERVL -364 5303 3875 4 1464 543 281 6 36 chr3 115316797 115316963 -44282820 + RSINE1 SINE B4 5 165 0 4 1464 313 221 52 96 chr3 115317066 115317181 -44282602 + MER110A LTR ERV1 242 351 -117 4 1464 202 370 72 69 chr3 115317589 115317865 -44281918 + L2c LINE L2 3034 3310 -77 4 1464 213 219 0 0 chr3 115318334 115318375 -44281408 + PB1D10 SINE Alu 43 83 -34 4 1464 634 219 112 0 chr3 115318967 115319136 -44280647 + Lx8 LINE L1 6777 6964 -509 4 1464 678 286 176 18 chr3 115319153 115319534 -44280249 + Lx8 LINE L1 6998 7438 -35 4 1464 378 0 0 0 chr3 115319534 115319576 -44280207 + (TG)n Simple_repeat Simple_repeat 2 43 0 4 1464 24 0 0 0 chr3 115319903 115319927 -44279856 + AT_rich Low_complexity Low_complexity 1 24 0 4 1464 202 269 26 0 chr3 115320452 115320530 -44279253 + L2 LINE L2 1854 1933 -1486 4 1464 496 282 30 0 chr3 115320763 115320894 -44278889 - ID_B1 SINE B4 -7 217 83 4 1464 409 326 129 0 chr3 115320957 115321150 -44278633 - MLT1A1 LTR MaLR -123 285 68 4 1464 1203 94 0 0 chr3 115321249 115321429 -44278354 + (TC)n Simple_repeat Simple_repeat 1 180 0 4 1464 26 30 0 0 chr3 115321511 115321544 -44278239 + AT_rich Low_complexity Low_complexity 1 33 0 4 1464 1309 129 8 63 chr3 115322623 115322862 -44276921 + URR1A DNA MER1_type 1 226 0 4 1464 317 268 111 1 chr3 115323544 115323647 -44276136 + PB1D7 SINE Alu 8 119 -1 4 1464 286 190 52 0 chr3 115323969 115324027 -44275756 - ID_B1 SINE B4 -60 164 104 4 1464 249 186 119 0 chr3 115324076 115324135 -44275648 + RSINE1 SINE B4 4 69 -96 4 1464 317 300 0 0 chr3 115324281 115324381 -44275402 + PB1D10 SINE Alu 15 114 -3 4 1464 696 56 0 0 chr3 115325092 115325181 -44274602 + (GGGA)n Simple_repeat Simple_repeat 4 92 0 4 1464 395 267 11 32 chr3 115325569 115325662 -44274121 + RSINE1 SINE B4 45 135 -30 4 1464 393 22 0 0 chr3 115325664 115325710 -44274073 + (CA)n Simple_repeat Simple_repeat 1 46 0 4 1464 854 210 0 0 chr3 115325710 115325853 -44273930 - B1_Mur1 SINE Alu -5 144 2 4 1464 242 262 12 0 chr3 115326348 115326428 -44273355 + Lx6 LINE L1 7365 7445 -15 4 1464 243 179 0 0 chr3 115326522 115326589 -44273194 + A-rich Low_complexity Low_complexity 1 67 0 4 1464 293 232 0 0 chr3 115326655 115326711 -44273072 + ID4 SINE ID 18 73 -10 5 1464 186 293 67 0 chr3 115327864 115327939 -44271844 - MIRb SINE MIR -169 99 20 5 1464 525 266 31 47 chr3 115328164 115328357 -44271426 + L1MA4A LINE L1 5783 5972 -331 5 1464 471 107 0 0 chr3 115328520 115328595 -44271188 + (TTG)n Simple_repeat Simple_repeat 3 77 0 5 1464 231 36 0 0 chr3 115328636 115328664 -44271119 + (CA)n Simple_repeat Simple_repeat 1 28 0 5 1464 553 275 49 16 chr3 115328962 115329147 -44270636 + B3A SINE B2 3 193 -5 5 1464 327 295 88 9 chr3 115330198 115330311 -44269472 - PB1 SINE Alu -4 123 2 5 1464 522 278 0 0 chr3 115330823 115330954 -44268829 + ID_B1 SINE B4 86 212 -12 5 1464 844 246 42 9 chr3 115331103 115331316 -44268467 + ID_B1 SINE B4 3 222 -2 5 1464 427 202 0 92 chr3 115331736 115331845 -44267938 + PB1D9 SINE Alu 10 108 -12 5 1464 278 250 126 87 chr3 115331845 115331863 -44267920 + ID_B1 SINE B4 91 222 -2 5 1464 755 178 147 11 chr3 115331868 115332156 -44267627 - MTC LTR MaLR 0 421 1 5 1464 234 287 58 19 chr3 115332681 115332784 -44266999 - MER34 LTR ERV1 -80 462 356 5 1464 869 230 47 30 chr3 115332997 115333293 -44266490 - RLTR15 LTR ERVK -56 303 3 5 1464 369 254 73 0 chr3 115333759 115333869 -44265914 + PB1D7 SINE Alu 2 119 -1 5 1464 558 157 0 0 chr3 115333974 115334076 -44265707 + (TG)n Simple_repeat Simple_repeat 2 103 0 5 1464 844 261 60 23 chr3 115334106 115334372 -44265411 - B4A SINE B4 -16 276 1 5 1464 500 264 74 7 chr3 115336804 115336899 -44262884 + RSINE1 SINE B4 4 98 -67 5 1464 288 0 0 0 chr3 115336899 115336931 -44262852 + (CA)n Simple_repeat Simple_repeat 1 32 0 5 1464 500 264 74 7 chr3 115336931 115336984 -44262799 + RSINE1 SINE B4 99 161 -4 5 1464 1120 239 99 23 chr3 115337094 115337437 -44262346 - MTE2b LTR MaLR -1 378 10 5 1464 702 314 96 3 chr3 115339238 115339529 -44260254 - MLT2B1 LTR ERVL -186 334 17 5 1464 464 326 60 21 chr3 115340140 115340375 -44259408 + ORR1E LTR MaLR 3 246 -113 5 1464 378 185 0 0 chr3 115340519 115340600 -44259183 + CT-rich Low_complexity Low_complexity 4 84 0 5 1464 538 301 138 0 chr3 115340600 115340796 -44258987 - ID_B1 SINE B4 0 224 2 5 1464 1130 201 17 13 chr3 115341058 115341295 -44258488 + RLTR18B LTR ERVK 3 240 -272 5 1464 1428 195 56 3 chr3 115341296 115341599 -44258184 + RLTR18B LTR ERVK 188 506 -6 5 1464 3091 23 0 3 chr3 115342100 115342447 -44257336 - ORR1A0 LTR MaLR 0 346 1 5 1465 234 128 0 0 chr3 115343409 115343448 -44256335 + (CATATA)n Simple_repeat Simple_repeat 4 42 0 5 1465 1406 221 132 47 chr3 115343614 115344107 -44255676 + RMER15 LTR ERVL 1 535 -40 5 1465 279 0 0 0 chr3 115344124 115344155 -44255628 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 5 1465 310 322 131 64 chr3 115344246 115344744 -44255039 - Lx8 LINE L1 -2 7471 6941 5 1465 21 36 0 0 chr3 115344755 115344783 -44255000 + AT_rich Low_complexity Low_complexity 1 28 0 5 1465 444 266 47 0 chr3 115345911 115346039 -44253744 - MER5A DNA MER1_type -9 180 47 5 1465 857 93 273 0 chr3 115346348 115346498 -44253285 - B2_Mm2 SINE B2 -4 191 1 5 1465 506 280 126 0 chr3 115346520 115346695 -44253088 - B3A SINE B2 -1 197 1 5 1465 1423 70 16 16 chr3 115347726 115347916 -44251867 + B2_Mm2 SINE B2 1 190 -5 5 1465 333 274 0 87 chr3 115347970 115348074 -44251709 + ID_B1 SINE B4 111 205 -19 5 1465 294 232 0 26 chr3 115348088 115348203 -44251580 + GA-rich Low_complexity Low_complexity 1 112 0 5 1465 507 279 29 0 chr3 115348955 115349091 -44250692 + B1F SINE Alu 10 149 0 5 1465 305 273 10 29 chr3 115349347 115349449 -44250334 - B1F1 SINE Alu -44 105 6 5 1465 2709 60 59 3 chr3 115350624 115350978 -44248805 + L1_Mus1 LINE L1 6194 6567 0 5 1465 266 301 133 75 chr3 115351045 115351271 -44248512 - B4A SINE B4 -52 240 2 5 1465 560 214 83 0 chr3 115351433 115351578 -44248205 + ID_B1 SINE B4 1 157 -67 5 1465 265 233 68 0 chr3 115351524 115351597 -44248186 + PB1D10 SINE Alu 22 99 -18 5 1465 388 304 57 14 chr3 115351658 115351798 -44247985 + B4A SINE B4 99 244 -48 5 1465 203 269 45 0 chr3 115351798 115351865 -44247918 + (CATA)n Simple_repeat Simple_repeat 1 70 0 5 1465 372 262 0 0 chr3 115351877 115351957 -44247826 + ID_B1 SINE B4 143 222 -2 5 1465 381 22 0 0 chr3 115352924 115352970 -44246813 + (CA)n Simple_repeat Simple_repeat 1 46 0 5 1465 439 277 54 0 chr3 115353372 115353502 -44246281 + ID_B1 SINE B4 80 216 -8 5 1465 217 186 23 0 chr3 115353529 115353572 -44246211 + A-rich Low_complexity Low_complexity 2 45 0 5 1465 304 323 55 24 chr3 115353839 115353966 -44245817 + L2a LINE L2 3296 3426 0 5 1465 936 299 63 3 chr3 115354324 115354626 -44245157 - MER2 DNA MER2_type -1 344 25 5 1465 819 309 87 11 chr3 115354677 115354942 -44244841 + B4 SINE B4 6 290 -2 5 1465 23 0 0 0 chr3 115354972 115354995 -44244788 + AT_rich Low_complexity Low_complexity 1 23 0 5 1465 306 67 0 0 chr3 115356031 115356076 -44243707 + (TG)n Simple_repeat Simple_repeat 1 45 0 5 1465 369 0 0 0 chr3 115356076 115356116 -44243667 + (GA)n Simple_repeat Simple_repeat 1 41 0 5 1465 215 235 29 14 chr3 115356420 115356489 -44243294 + L2 LINE L2 2501 2570 -849 5 1465 525 250 83 0 chr3 115356601 115356733 -44243050 + B1F2 SINE Alu 2 144 -5 5 1465 538 325 77 38 chr3 115356735 115357126 -44242657 + L2 LINE L2 2555 2960 -459 5 1465 299 183 12 0 chr3 115357187 115357269 -44242514 + (TAGA)n Simple_repeat Simple_repeat 4 86 0 5 1465 324 0 0 0 chr3 115357353 115357389 -44242394 + (CAGA)n Simple_repeat Simple_repeat 2 37 0 5 1465 658 264 190 12 chr3 115357391 115357633 -44242150 - RMER15 LTR ERVL -18 557 273 5 1465 229 217 82 61 chr3 115357627 115357725 -44242058 - RMER15 LTR ERVL -415 160 61 5 1465 216 195 36 24 chr3 115357807 115357891 -44241892 + (TATATG)n Simple_repeat Simple_repeat 6 90 0 5 1465 184 40 0 0 chr3 115357973 115357998 -44241785 + L2a LINE L2 3391 3415 -11 5 1465 26 64 0 0 chr3 115358907 115358954 -44240829 + AT_rich Low_complexity Low_complexity 1 47 0 5 1465 459 248 17 26 chr3 115358992 115359108 -44240675 + PB1D9 SINE Alu 5 119 -1 5 1465 504 259 0 0 chr3 115359139 115359247 -44240536 + PB1D10 SINE Alu 5 112 -5 5 1465 222 37 0 0 chr3 115359865 115359892 -44239891 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 5 1465 711 207 89 6 chr3 115360019 115360199 -44239584 + B3 SINE B2 11 205 -11 5 1465 360 310 95 34 chr3 115360904 115361051 -44238732 - MARNA DNA Mariner -412 174 19 5 1465 292 320 20 0 chr3 115361575 115361675 -44238108 - MER5A DNA MER1_type 0 189 88 5 1465 562 188 12 18 chr3 115361701 115361869 -44237914 + CT-rich Low_complexity Low_complexity 2 168 0 5 1465 567 29 0 0 chr3 115361900 115361969 -44237814 + (GTTTG)n Simple_repeat Simple_repeat 5 73 0 5 1465 396 0 0 0 chr3 115362014 115362058 -44237725 + (TG)n Simple_repeat Simple_repeat 2 45 0 5 1465 588 254 0 0 chr3 115362060 115362182 -44237601 - ID_B1 SINE B4 -4 220 99 5 1465 196 360 45 32 chr3 115362593 115362748 -44237035 + MER5B DNA MER1_type 15 171 -7 5 1465 452 260 99 30 chr3 115363156 115363287 -44236496 + B1F SINE Alu 3 142 -7 5 1465 242 160 20 0 chr3 115363310 115363360 -44236423 + GA-rich Low_complexity Low_complexity 4 54 0 5 1465 198 128 0 0 chr3 115363425 115363464 -44236319 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 5 1465 26 0 0 0 chr3 115363892 115363918 -44235865 + AT_rich Low_complexity Low_complexity 1 26 0 5 1465 344 259 84 25 chr3 115364325 115364444 -44235339 - B1F SINE Alu -14 135 10 5 1465 364 208 116 54 chr3 115365656 115365768 -44234015 + LTR29 LTR ERV1 1 119 -525 5 1465 438 216 0 0 chr3 115365956 115366132 -44233651 + GA-rich Low_complexity Low_complexity 1 176 0 5 1465 269 217 131 12 chr3 115366334 115366418 -44233365 + MER34 LTR ERV1 384 477 -65 5 1465 661 326 24 32 chr3 115366500 115366747 -44233036 + Tigger7 DNA MER2_type 26 270 -2221 5 1465 290 211 13 38 chr3 115366754 115366833 -44232950 - L1MC4a LINE L1 -571 7311 7235 5 1465 380 228 69 0 chr3 115366965 115367066 -44232717 - MLT1B LTR MaLR -94 296 189 5 1465 244 127 0 35 chr3 115368101 115368158 -44231625 + CT-rich Low_complexity Low_complexity 3 57 0 5 1465 233 310 120 30 chr3 115368160 115368194 -44231589 - ID_B1 SINE B4 0 224 113 5 1465 385 264 0 0 chr3 115368194 115368285 -44231498 - B1F SINE Alu -52 97 7 5 1465 439 221 95 9 chr3 115368311 115368416 -44231367 - PB1D9 SINE Alu -2 118 5 5 1465 341 167 62 28 chr3 115368541 115368634 -44231149 + Lx5 LINE L1 6849 6978 -80 5 1465 204 40 0 0 chr3 115368663 115368688 -44231095 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 5 1465 630 256 7 0 chr3 115368718 115368855 -44230928 + B1_Mur1 SINE Alu 10 147 -2 5 1465 451 299 0 0 chr3 115368864 115368981 -44230802 + PB1D10 SINE Alu 1 117 0 5 1465 346 336 22 30 chr3 115369007 115369142 -44230641 + MTE2a LTR MaLR 1 134 -285 5 1465 860 181 220 0 chr3 115369143 115369320 -44230463 + B3 SINE B2 1 216 0 5 1465 727 283 43 80 chr3 115369336 115369636 -44230147 + MTE2a LTR MaLR 91 379 0 5 1465 1373 34 6 0 chr3 115369866 115370041 -44229742 + (TC)n Simple_repeat Simple_repeat 2 177 0 5 1465 1736 236 37 15 chr3 115370083 115370491 -44229292 + MTD LTR MaLR 3 419 0 5 1465 3234 60 5 2 chr3 115370677 115371076 -44228707 + MTB LTR MaLR 1 400 0 5 1465 268 281 0 0 chr3 115371131 115371195 -44228588 + B4A SINE B4 83 146 -146 5 1465 438 290 0 9 chr3 115371139 115371247 -44228536 + PB1D10 SINE Alu 6 112 -5 5 1465 809 127 28 69 chr3 115371350 115371494 -44228289 + B1_Mus2 SINE Alu 1 138 -9 6 1465 405 0 0 0 chr3 115371494 115371539 -44228244 + (CA)n Simple_repeat Simple_repeat 2 46 0 6 1465 1023 250 140 9 chr3 115371659 115371994 -44227789 - MTD LTR MaLR -15 404 26 6 1465 1467 229 8 71 chr3 115372118 115372498 -44227285 - ORR1D1 LTR MaLR 0 374 20 6 1465 6763 40 0 0 chr3 115372498 115373290 -44226493 + L1Md_F2 LINE L1 5780 6571 -11 6 1465 1467 229 8 71 chr3 115373290 115373304 -44226479 - ORR1D1 LTR MaLR -355 19 6 6 1465 273 290 0 0 chr3 115373663 115373725 -44226058 + tRNA-Ala-GCY_ tRNA tRNA 2 63 -12 6 1465 231 270 24 108 chr3 115373725 115373746 -44226037 + ID4_ SINE ID 8 83 0 6 1465 288 267 16 0 chr3 115374002 115374085 -44225698 + B1F2 SINE Alu 6 92 -57 6 1465 236 286 0 0 chr3 115374268 115374324 -44225459 + RMER15 LTR ERVL 403 458 -117 6 1465 921 134 0 0 chr3 115374347 115374496 -44225287 + (GGAA)n Simple_repeat Simple_repeat 4 152 0 6 1465 225 351 53 0 chr3 115374960 115375054 -44224729 - MER81 DNA AcHobo -1 113 15 6 1465 363 284 8 76 chr3 115377342 115377460 -44222323 + RSINE1 SINE B4 1 110 -55 6 1465 432 0 0 0 chr3 115377474 115377522 -44222261 + (CA)n Simple_repeat Simple_repeat 2 49 0 6 1465 236 317 20 66 chr3 115378352 115378504 -44221279 - L2 LINE L2 -475 2944 2800 6 1465 320 330 40 2 chr3 115378511 115378642 -44221141 + MIR SINE MIR 15 159 -49 6 1465 303 242 95 0 chr3 115378646 115378741 -44221042 + PB1D10 SINE Alu 11 114 -3 6 1465 343 288 52 22 chr3 115379137 115379152 -44220631 - B1F SINE Alu 0 149 137 6 1465 294 73 0 0 chr3 115379152 115379193 -44220590 + (TTTG)n Simple_repeat Simple_repeat 3 43 0 6 1465 343 288 52 22 chr3 115379193 115379312 -44220471 - B1F SINE Alu -13 136 12 6 1465 309 336 16 0 chr3 115379399 115379521 -44220262 - L1ME3 LINE L1 -170 5992 5869 6 1465 464 234 93 8 chr3 115379555 115379684 -44220099 - B1F SINE Alu -9 140 1 6 1465 915 80 0 0 chr3 115379706 115379831 -44219952 + (TG)n Simple_repeat Simple_repeat 1 125 0 6 1465 539 294 142 50 chr3 115379833 115380094 -44219689 - B4A SINE B4 -6 286 2 6 1465 299 219 21 10 chr3 115380165 115380262 -44219521 - L1ME2 LINE L1 -6 6158 6061 6 1465 236 302 11 23 chr3 115380311 115380399 -44219384 + MTD LTR MaLR 194 280 -139 6 1465 682 129 0 0 chr3 115380390 115380491 -44219292 - B1_Mur4 SINE Alu -33 117 17 6 1465 180 0 0 0 chr3 115380494 115380514 -44219269 + (CCA)n Simple_repeat Simple_repeat 2 21 0 6 1465 879 284 27 14 chr3 115380609 115380830 -44218953 - ID_B1 SINE B4 0 224 1 6 1465 408 257 16 66 chr3 115380835 115380956 -44218827 - PB1D10 SINE Alu 0 117 3 6 1465 350 305 55 71 chr3 115380967 115381102 -44218681 - L1M5 LINE L1 -1909 4237 4090 6 1465 691 201 27 27 chr3 115381102 115381250 -44218533 + B1_Mur1 SINE Alu 1 148 -1 6 1465 350 289 37 78 chr3 115381250 115381399 -44218384 - L1M5 LINE L1 -2057 4089 3951 6 1465 237 247 25 25 chr3 115381419 115381498 -44218285 - L1MC LINE L1 -2323 3823 3745 6 1465 24 0 0 0 chr3 115381684 115381708 -44218075 + AT_rich Low_complexity Low_complexity 1 24 0 6 1465 1233 218 127 0 chr3 115381963 115382270 -44217513 - MTD LTR MaLR -73 346 1 6 1465 289 398 0 0 chr3 115382583 115382686 -44217097 - PB1D10 SINE Alu -14 103 1 6 1465 349 219 66 7 chr3 115382929 115383033 -44216750 + PB1D10 SINE Alu 7 121 -6 6 1465 217 113 75 0 chr3 115383120 115383173 -44216610 + T-rich Low_complexity Low_complexity 4 60 0 6 1465 359 253 0 60 chr3 115383883 115383967 -44215816 + RSINE1 SINE B4 3 81 -84 6 1465 458 353 89 10 chr3 115384570 115384773 -44215010 - LTR16A LTR ERVL -92 359 141 6 1465 321 328 26 9 chr3 115384778 115384892 -44214891 + PB1D10 SINE Alu 2 117 0 6 1465 453 224 0 33 chr3 115384892 115385012 -44214771 + BC1_Mm scRNA scRNA 4 119 -33 6 1465 239 323 0 0 chr3 115385023 115385085 -44214698 + polypurine Low_complexity Low_complexity 1 62 0 6 1465 957 77 17 29 chr3 115385087 115385260 -44214523 + (GGAAA)n Simple_repeat Simple_repeat 4 174 0 6 1465 194 294 23 12 chr3 115385359 115385445 -44214338 - L2 LINE L2 -1080 2339 2253 6 1465 299 328 50 16 chr3 115385446 115385567 -44214216 + PB1 SINE Alu 1 125 -2 6 1465 259 269 0 15 chr3 115385964 115386032 -44213751 + G-rich Low_complexity Low_complexity 3 69 0 6 1465 464 275 0 0 chr3 115386305 115386414 -44213369 + PB1D10 SINE Alu 4 112 -5 6 1465 383 274 21 0 chr3 115386495 115386590 -44213193 + ID_B1 SINE B4 124 220 -4 6 1465 1179 126 0 21 chr3 115386686 115386710 -44213073 - B2_Mm2 SINE B2 -13 182 159 6 1465 207 0 0 0 chr3 115386710 115386733 -44213050 + (TTTA)n Simple_repeat Simple_repeat 3 25 0 6 1465 1179 126 0 21 chr3 115386733 115386894 -44212889 - B2_Mm2 SINE B2 -37 158 1 6 1465 365 339 15 51 chr3 115386935 115387032 -44212751 - ID_B1 SINE B4 -90 134 42 6 1465 3042 26 0 3 chr3 115387032 115387379 -44212404 + ORR1A1 LTR MaLR 1 346 0 6 1465 365 339 15 51 chr3 115387379 115387418 -44212365 - ID SINE ID -183 41 3 6 1465 429 214 119 30 chr3 115387433 115387534 -44212249 - B1F2 SINE Alu -6 111 2 6 1465 461 272 6 69 chr3 115387587 115387761 -44212022 - RSINE1 SINE B4 0 165 3 6 1465 615 202 158 0 chr3 115388317 115388475 -44211308 - B3 SINE B2 0 216 34 6 1465 396 262 37 0 chr3 115388742 115388849 -44210934 - PB1D10 SINE Alu -1 116 6 6 1465 22 0 0 0 chr3 115389170 115389192 -44210591 + AT_rich Low_complexity Low_complexity 1 22 0 6 1465 26 0 0 0 chr3 115389247 115389273 -44210510 + AT_rich Low_complexity Low_complexity 1 26 0 6 1465 274 258 143 10 chr3 115389483 115389581 -44210202 + ID_B1 SINE B4 100 210 -14 6 1465 884 128 6 0 chr3 115389582 115389761 -44210022 + (GAGAA)n Simple_repeat Simple_repeat 1 180 0 6 1465 180 0 0 0 chr3 115389761 115389781 -44210002 + (AATAG)n Simple_repeat Simple_repeat 4 23 0 6 1465 639 258 99 27 chr3 115390355 115390578 -44209205 - ORR1D2 LTR MaLR -128 242 4 6 1465 344 269 168 0 chr3 115390583 115390732 -44209051 - L1MA5 LINE L1 -43 6257 6084 6 1465 3359 48 5 0 chr3 115391077 115391475 -44208308 + MTB LTR MaLR 1 400 0 6 1465 278 197 27 27 chr3 115391707 115391780 -44208003 + Tigger9a DNA Tigger 597 669 -63 6 1465 911 169 98 27 chr3 115391943 115392168 -44207615 + Lx9 LINE L1 7404 7644 0 6 1465 192 347 62 10 chr3 115392749 115392845 -44206938 + MIRc SINE MIR 33 133 -135 6 1465 310 273 67 22 chr3 115393019 115393109 -44206674 + ID_B1 SINE B4 121 214 -10 6 1465 531 0 0 0 chr3 115393189 115393248 -44206535 + (TG)n Simple_repeat Simple_repeat 2 60 0 6 1465 198 0 0 0 chr3 115393284 115393306 -44206477 + (TTTG)n Simple_repeat Simple_repeat 3 24 0 6 1465 287 244 146 0 chr3 115393441 115393523 -44206260 + B3A SINE B2 1 94 -104 6 1465 210 171 0 0 chr3 115393777 115393818 -44205965 + (TTTG)n Simple_repeat Simple_repeat 3 43 0 6 1465 733 158 22 29 chr3 115393825 115393962 -44205821 - B1_Mus1 SINE Alu -2 146 11 6 1465 483 208 148 22 chr3 115394045 115394227 -44205556 + RMER5 LTR ERV1 51 255 -279 6 1465 223 237 17 0 chr3 115394724 115394783 -44205000 + B1F SINE Alu 83 142 -7 6 1465 243 0 0 0 chr3 115394797 115394824 -44204959 + (CA)n Simple_repeat Simple_repeat 2 28 0 6 1465 257 283 17 0 chr3 115394829 115394889 -44204894 + polypurine Low_complexity Low_complexity 3 63 0 6 1465 534 31 0 0 chr3 115394925 115394989 -44204794 + (TG)n Simple_repeat Simple_repeat 2 65 0 6 1465 486 0 0 0 chr3 115395680 115395734 -44204049 + (TG)n Simple_repeat Simple_repeat 1 54 0 6 1465 238 254 17 17 chr3 115395738 115395798 -44203985 - tRNA-Ala-GCY_ tRNA tRNA -12 63 4 6 1465 337 305 28 9 chr3 115395835 115395941 -44203842 - PB1D10 SINE Alu -1 116 9 6 1465 756 275 43 5 chr3 115396512 115396720 -44203063 + ID_B1 SINE B4 2 217 -7 6 1465 291 356 48 0 chr3 115396733 115396879 -44202904 + RSINE1 SINE B4 4 156 -9 6 1465 417 39 0 0 chr3 115396882 115396933 -44202850 + (CA)n Simple_repeat Simple_repeat 1 51 0 6 1465 645 14 0 0 chr3 115396982 115397056 -44202727 + (GA)n Simple_repeat Simple_repeat 2 75 0 6 1465 302 197 42 14 chr3 115397056 115397128 -44202655 + B3A SINE B2 4 77 -121 6 1465 214 336 18 45 chr3 115397278 115397390 -44202393 + B3A SINE B2 72 180 -18 6 1465 237 83 0 0 chr3 115397547 115397583 -44202200 + (TTTTG)n Simple_repeat Simple_repeat 1 36 0 6 1465 450 0 0 0 chr3 115397717 115397767 -44202016 + (CA)n Simple_repeat Simple_repeat 2 51 0 6 1465 1243 80 51 11 chr3 115398926 115399103 -44200680 + B2_Mm2 SINE B2 2 185 -10 6 1465 986 254 124 78 chr3 115399108 115399608 -44200175 - Lx8 LINE L1 -22 7451 6929 6 1465 680 263 59 59 chr3 115399605 115399827 -44199956 - Lx8 LINE L1 -783 6690 6469 6 1465 383 235 0 0 chr3 115400328 115400413 -44199370 + ID_B1 SINE B4 133 217 -7 6 1465 1240 180 9 5 chr3 115400678 115400901 -44198882 - URR1A DNA MER1_type -2 224 1 6 1465 186 43 0 0 chr3 115401359 115401382 -44198401 + (TC)n Simple_repeat Simple_repeat 2 24 0 6 1465 646 264 11 33 chr3 115401447 115401631 -44198152 + B3A SINE B2 15 194 -4 6 1465 639 108 0 38 chr3 115401686 115401792 -44197991 - BC1_Mm scRNA scRNA -49 103 2 6 1465 22 0 0 0 chr3 115401792 115401814 -44197969 + AT_rich Low_complexity Low_complexity 1 22 0 6 1465 270 0 0 0 chr3 115402320 115402350 -44197433 + (T)n Simple_repeat Simple_repeat 1 30 0 6 1465 22 61 0 43 chr3 115402830 115402899 -44196884 + AT_rich Low_complexity Low_complexity 1 66 0 6 1465 650 24 12 0 chr3 115402900 115402984 -44196799 + (TTTA)n Simple_repeat Simple_repeat 1 85 0 6 1465 27 0 0 0 chr3 115403106 115403133 -44196650 + AT_rich Low_complexity Low_complexity 1 27 0 6 1465 316 359 52 24 chr3 115403204 115403415 -44196368 - ID_B1 SINE B4 -4 220 4 7 1465 269 252 23 102 chr3 115403493 115403621 -44196162 - B3A SINE B2 -1 197 80 7 1465 207 0 0 0 chr3 115403665 115403688 -44196095 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 7 1465 189 82 20 39 chr3 115403701 115403752 -44196031 + (TTTG)n Simple_repeat Simple_repeat 2 51 0 7 1465 681 143 45 91 chr3 115403754 115403908 -44195875 - B1_Mus1 SINE Alu 0 148 2 7 1465 615 278 129 34 chr3 115403985 115404249 -44195534 + B4A SINE B4 4 292 0 7 1465 237 269 0 170 chr3 115404407 115404501 -44195282 - RSINE1 SINE B4 0 165 88 7 1465 405 0 0 0 chr3 115404648 115404693 -44195090 + (TG)n Simple_repeat Simple_repeat 2 46 0 7 1465 1357 59 0 70 chr3 115404788 115404989 -44194794 + B2_Mm2 SINE B2 1 187 -8 7 1465 657 296 32 5 chr3 115405563 115405780 -44194003 + ID_B1 SINE B4 1 223 -1 7 1465 220 262 94 28 chr3 115405810 115405916 -44193867 + PB1D10 SINE Alu 4 116 -1 7 1465 724 200 120 29 chr3 115406160 115406335 -44193448 + B3A SINE B2 1 191 -7 7 1465 261 0 0 0 chr3 115406695 115406724 -44193059 + (CAAGG)n Simple_repeat Simple_repeat 2 30 0 7 1465 351 0 0 0 chr3 115406789 115406828 -44192955 + (TG)n Simple_repeat Simple_repeat 1 39 0 7 1465 430 231 163 16 chr3 115407103 115407226 -44192557 - B1F SINE Alu -1 148 8 7 1465 644 265 23 40 chr3 115408615 115408792 -44190991 - B3A SINE B2 -24 174 1 7 1465 1620 42 5 0 chr3 115408920 115409112 -44190671 + B2_Mm1t SINE B2 1 193 0 7 1465 370 270 90 0 chr3 115409298 115409398 -44190385 + PB1D7 SINE Alu 2 110 -10 7 1465 477 0 0 0 chr3 115409430 115409483 -44190300 + (CA)n Simple_repeat Simple_repeat 1 53 0 7 1465 557 289 45 85 chr3 115409737 115409960 -44189823 + ID_B1 SINE B4 9 222 -2 7 1465 253 288 0 0 chr3 115409987 115410053 -44189730 + ID_B1 SINE B4 159 224 0 7 1465 243 61 0 0 chr3 115410198 115410231 -44189552 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 7 1465 732 217 0 20 chr3 115410656 115410802 -44188981 - B1_Mur4 SINE Alu -7 143 1 7 1465 317 289 86 0 chr3 115411062 115411190 -44188593 - B1F SINE Alu -6 143 5 7 1465 221 304 110 37 chr3 115411199 115411281 -44188502 - RSINE1 SINE B4 -77 88 1 7 1465 252 0 0 0 chr3 115411458 115411486 -44188297 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 7 1465 576 251 177 0 chr3 115411488 115411663 -44188120 - ID_B1 SINE B4 -13 211 6 7 1465 403 149 0 15 chr3 115412626 115412694 -44187089 + ID4_ SINE ID 1 67 -16 7 1465 252 86 0 0 chr3 115412722 115412757 -44187026 + (GGA)n Simple_repeat Simple_repeat 2 36 0 7 1465 293 300 67 0 chr3 115412757 115412847 -44186936 + ID_B1 SINE B4 122 217 -7 7 1465 281 26 26 0 chr3 115413901 115413939 -44185844 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 7 1465 288 0 0 0 chr3 115416469 115416501 -44183282 + (CA)n Simple_repeat Simple_repeat 2 33 0 7 1465 25 0 0 0 chr3 115417316 115417341 -44182442 + AT_rich Low_complexity Low_complexity 1 25 0 7 1465 569 271 38 0 chr3 115419730 115419863 -44179920 + ID_B1 SINE B4 75 212 -12 7 1465 313 371 18 89 chr3 115419904 115419974 -44179809 + B4 SINE B4 24 211 -81 7 1465 700 257 0 7 chr3 115419974 115420123 -44179660 + B1_Mur1 SINE Alu 2 149 0 7 1465 1889 177 98 10 chr3 115420194 115420583 -44179200 - MT2A LTR ERVL -98 435 13 7 1465 711 270 15 44 chr3 115420631 115420836 -44178947 - ID_B1 SINE B4 -17 207 9 7 1465 24 67 0 0 chr3 115420952 115420997 -44178786 + AT_rich Low_complexity Low_complexity 1 45 0 7 1465 862 198 82 6 chr3 115422052 115422235 -44177548 - B3A SINE B2 0 198 2 7 1465 368 130 0 25 chr3 115422268 115422347 -44177436 + (TCTCTG)n Simple_repeat Simple_repeat 2 78 0 7 1465 414 0 0 0 chr3 115422375 115422421 -44177362 + (TG)n Simple_repeat Simple_repeat 2 47 0 7 1465 229 229 100 0 chr3 115422478 115422491 -44177292 - B4A SINE B4 -131 161 88 7 1465 271 185 37 0 chr3 115422491 115422545 -44177238 - B1F1 SINE Alu -91 58 3 7 1465 465 305 7 21 chr3 115423941 115424085 -44175698 - B1F1 SINE Alu 0 149 8 7 1465 354 61 0 0 chr3 115424150 115424199 -44175584 + (TCTG)n Simple_repeat Simple_repeat 4 52 0 7 1465 464 237 123 0 chr3 115424213 115424327 -44175456 - RSINE1 SINE B4 -37 128 1 7 1465 280 345 87 4 chr3 115424481 115424711 -44175072 - HAL1 LINE L1 -698 1809 1561 7 1465 243 0 0 0 chr3 115424884 115424911 -44174872 + (TC)n Simple_repeat Simple_repeat 2 28 0 7 1465 2156 102 9 0 chr3 115424918 115425233 -44174550 + ORR1A2 LTR MaLR 1 318 -9 7 1465 318 298 33 0 chr3 115425279 115425398 -44174385 - MLT1A0 LTR MaLR 0 365 243 7 1465 633 248 29 0 chr3 115425398 115425535 -44174248 + B1_Mur1 SINE Alu 1 141 -8 7 1465 522 0 0 0 chr3 115425544 115425602 -44174181 + (TGGA)n Simple_repeat Simple_repeat 3 60 0 7 1465 479 271 8 17 chr3 115425757 115425877 -44173906 - ID_B1 SINE B4 -4 220 102 7 1465 262 256 90 76 chr3 115425877 115425896 -44173887 - B1_Mur4 SINE Alu 0 145 5 7 1465 1185 300 86 37 chr3 115426005 115426079 -44173704 - Lx8 LINE L1 -69 7404 7335 7 1465 222 37 0 0 chr3 115426079 115426106 -44173677 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 7 1465 1185 300 86 37 chr3 115426106 115426544 -44173239 - Lx8 LINE L1 -139 7334 6867 7 1465 666 84 0 0 chr3 115426554 115426661 -44173122 + (CA)n Simple_repeat Simple_repeat 1 107 0 7 1465 698 208 7 14 chr3 115426662 115426808 -44172975 - B1F2 SINE Alu 0 149 5 7 1465 926 208 45 57 chr3 115427190 115427435 -44172348 - L1_Mur3 LINE L1 -2998 2882 2641 7 1465 209 125 0 24 chr3 115427435 115427476 -44172307 + (TTTG)n Simple_repeat Simple_repeat 1 40 0 7 1465 604 233 0 0 chr3 115427487 115427603 -44172180 - B1_Mur4 SINE Alu -34 116 1 7 1465 2292 294 58 48 chr3 115427603 115429105 -44170678 - L1_Rod LINE L1 -3162 2685 1165 7 1465 687 99 0 0 chr3 115429288 115429389 -44170394 + (TTTC)n Simple_repeat Simple_repeat 2 102 0 7 1465 243 310 0 11 chr3 115430595 115430683 -44169100 - HAL1 LINE L1 -1060 1447 1361 7 1465 225 83 0 0 chr3 115431052 115431088 -44168695 + (T)n Simple_repeat Simple_repeat 1 36 0 7 1465 491 216 0 0 chr3 115431090 115431187 -44168596 - PB1D9 SINE Alu 0 120 24 7 1465 328 259 191 57 chr3 115431259 115431505 -44168278 - HAL1 LINE L1 -1600 907 629 7 1465 428 263 64 21 chr3 115431871 115432011 -44167772 - B1F1 SINE Alu -2 147 2 7 1465 234 276 61 38 chr3 115432591 115432723 -44167060 - MIR SINE MIR -30 232 98 7 1465 933 113 0 0 chr3 115432865 115433006 -44166777 + (TG)n Simple_repeat Simple_repeat 1 141 0 7 1465 901 262 65 4 chr3 115433085 115433345 -44166438 + MTEa LTR MaLR 104 379 0 7 1465 481 276 30 7 chr3 115433482 115433617 -44166166 - B1F SINE Alu -11 138 1 7 1465 385 219 52 0 chr3 115433665 115433761 -44166022 + B3A SINE B2 2 102 -96 7 1465 271 296 68 102 chr3 115433769 115433946 -44165837 - L1M2 LINE L1 -591 5709 5539 7 1465 324 335 54 21 chr3 115434087 115434273 -44165510 - L1M2 LINE L1 -798 5345 5154 7 1465 803 252 115 0 chr3 115434311 115434537 -44165246 - B4A SINE B4 0 292 41 7 1465 401 141 81 23 chr3 115434592 115434679 -44165104 - ID_B1 SINE B4 -6 218 127 7 1465 1316 206 147 6 chr3 115434728 115435083 -44164700 + MTD LTR MaLR 15 404 -15 7 1465 339 250 26 0 chr3 115435098 115435174 -44164609 - ID SINE ID -142 82 5 7 1465 246 348 113 0 chr3 115435409 115435524 -44164259 + B1F SINE Alu 22 149 0 7 1465 670 194 76 23 chr3 115436388 115436520 -44163263 + B1_Mur3 SINE Alu 3 141 -8 7 1465 399 157 0 0 chr3 115436646 115436716 -44163067 + CT-rich Low_complexity Low_complexity 2 71 0 7 1465 511 316 71 15 chr3 115436777 115436855 -44162928 + ID_B1 SINE B4 5 93 -131 7 1465 1494 209 70 28 chr3 115436855 115437214 -44162569 + ORR1D1 LTR MaLR 1 374 0 7 1465 511 316 71 15 chr3 115437214 115437331 -44162452 + ID_B1 SINE B4 94 211 -13 7 1465 352 256 26 0 chr3 115437419 115437497 -44162286 - PB1D10 SINE Alu -14 103 24 7 1465 1180 75 0 0 chr3 115437510 115437656 -44162127 + B1_Mus2 SINE Alu 2 147 0 7 1465 432 0 0 0 chr3 115438153 115438201 -44161582 + (TTTA)n Simple_repeat Simple_repeat 2 49 0 7 1465 238 236 41 14 chr3 115438396 115438469 -44161314 - LTR33 LTR ERVL -64 451 377 7 1465 570 15 0 0 chr3 115438722 115438789 -44160994 + (TG)n Simple_repeat Simple_repeat 1 67 0 7 1465 729 270 6 0 chr3 115439516 115439679 -44160104 + B4A SINE B4 1 164 -128 7 1465 183 100 0 0 chr3 115439768 115439798 -44159985 + (CA)n Simple_repeat Simple_repeat 1 30 0 7 1465 389 141 141 0 chr3 115439890 115439968 -44159815 + B1F2 SINE Alu 45 133 -16 7 1465 731 56 19 0 chr3 115439991 115440098 -44159685 + B1_Mus1 SINE Alu 40 148 0 7 1465 765 157 0 0 chr3 115440099 115440233 -44159550 + GA-rich Low_complexity Low_complexity 2 135 0 7 1465 1188 0 0 0 chr3 115440234 115440366 -44159417 + (GGAAA)n Simple_repeat Simple_repeat 2 133 0 7 1465 29 0 0 0 chr3 115441374 115441403 -44158380 + AT_rich Low_complexity Low_complexity 1 29 0 7 1465 459 347 29 112 chr3 115442268 115442580 -44157203 + B4A SINE B4 1 286 -6 7 1465 361 324 27 33 chr3 115443374 115443524 -44156259 + B1F2 SINE Alu 1 149 0 7 1465 554 199 184 0 chr3 115443798 115443939 -44155844 - B3 SINE B2 -46 170 4 7 1465 462 281 9 0 chr3 115444432 115444546 -44155237 - PB1D9 SINE Alu -5 115 1 7 1465 6489 52 5 1 chr3 115444744 115445531 -44154252 - L1_Mus1 LINE L1 -6 6561 5772 7 1465 531 219 55 61 chr3 115446088 115446253 -44153530 + RSINE1 SINE B4 2 165 0 8 1465 27 49 0 0 chr3 115446262 115446303 -44153480 + AT_rich Low_complexity Low_complexity 1 41 0 8 1465 937 243 4 39 chr3 115446371 115446602 -44153181 - ID_B1 SINE B4 -1 223 1 8 1465 747 97 0 0 chr3 115446763 115446877 -44152906 + (GAAA)n Simple_repeat Simple_repeat 4 117 0 8 1465 189 0 0 0 chr3 115447185 115447206 -44152577 + (TG)n Simple_repeat Simple_repeat 2 22 0 8 1465 213 274 16 16 chr3 115447225 115447288 -44152495 + CT-rich Low_complexity Low_complexity 2 64 0 8 1465 338 276 37 84 chr3 115447327 115447434 -44152349 - B1F SINE Alu -15 134 33 8 1465 413 309 27 0 chr3 115447524 115447634 -44152149 - PB1D7 SINE Alu -3 117 5 8 1465 180 0 0 0 chr3 115447751 115447771 -44152012 + (A)n Simple_repeat Simple_repeat 1 20 0 8 1465 377 226 117 0 chr3 115448391 115448503 -44151280 - B3 SINE B2 -68 127 1 8 1465 451 235 17 9 chr3 115449222 115449338 -44150445 - PB1D10 SINE Alu 0 117 1 8 1465 275 371 45 0 chr3 115450495 115450518 -44149265 + B4 SINE B4 80 169 -123 8 1465 499 252 0 0 chr3 115450518 115450617 -44149166 + B1F1 SINE Alu 18 116 -33 8 1465 252 0 0 0 chr3 115450635 115450663 -44149120 + (CAGA)n Simple_repeat Simple_repeat 1 28 0 8 1465 203 103 0 25 chr3 115450703 115450743 -44149040 + (TCTCTG)n Simple_repeat Simple_repeat 4 42 0 8 1465 615 44 0 32 chr3 115450819 115450913 -44148870 + (TAGA)n Simple_repeat Simple_repeat 4 94 0 8 1465 1298 168 0 54 chr3 115452289 115452528 -44147255 - URR1A DNA MER1_type 0 226 1 8 1465 547 335 19 32 chr3 115452543 115452759 -44147024 + MTE2a LTR MaLR 70 282 -97 8 1465 1039 86 0 6 chr3 115452989 115453152 -44146631 - RMER17D2 LTR ERVK -1 808 647 8 1465 1010 260 52 43 chr3 115453219 115453548 -44146235 + ORR1D2 LTR MaLR 37 368 -2 8 1465 261 274 27 0 chr3 115453549 115453622 -44146161 + MTE2a LTR MaLR 284 358 -21 8 1465 612 272 12 30 chr3 115453833 115454000 -44145783 - RSINE1 SINE B4 -1 164 1 8 1465 1242 100 0 0 chr3 115454560 115454740 -44145043 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 8 1465 487 232 33 67 chr3 115454937 115455057 -44144726 + RSINE1 SINE B4 3 118 -47 8 1465 2954 98 40 9 chr3 115455055 115455223 -44144560 - MT2C_Mm LTR ERVL -8 467 299 8 1465 531 0 0 0 chr3 115455223 115455282 -44144501 + (GA)n Simple_repeat Simple_repeat 2 60 0 8 1465 2954 98 40 9 chr3 115455282 115455566 -44144217 - MT2C_Mm LTR ERVL -177 298 1 8 1465 213 65 0 0 chr3 115456568 115456599 -44143184 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 8 1465 523 225 7 48 chr3 115456615 115456760 -44143023 - B1_Mur2 SINE Alu -10 139 1 8 1465 342 211 90 18 chr3 115456909 115457020 -44142763 + PB1D7 SINE Alu 1 119 -1 8 1465 485 154 46 37 chr3 115457046 115457154 -44142629 + RSINE1 SINE B4 49 157 -8 8 1465 695 174 55 48 chr3 115457234 115457379 -44142404 - B1_Mur4 SINE Alu -3 147 2 8 1465 207 0 0 0 chr3 115457888 115457911 -44141872 + (A)n Simple_repeat Simple_repeat 1 23 0 8 1465 218 277 0 0 chr3 115458784 115458831 -44140952 + polypyrimidine Low_complexity Low_complexity 3 49 0 8 1465 784 142 13 7 chr3 115459084 115459233 -44140550 + G-rich Low_complexity Low_complexity 3 152 0 8 1465 474 250 0 0 chr3 115459364 115459476 -44140307 - PB1D10 SINE Alu -5 112 1 8 1465 1843 157 3 74 chr3 115459729 115460081 -44139702 - ORR1A2 LTR MaLR 0 327 1 8 1465 346 326 161 14 chr3 115460092 115460235 -44139548 + B3A SINE B2 1 164 -34 8 1465 186 43 0 0 chr3 115460249 115460272 -44139511 + (CA)n Simple_repeat Simple_repeat 2 24 0 8 1465 315 351 22 32 chr3 115460416 115460733 -44139050 + L1MA10 LINE L1 5856 6320 -14 8 1465 375 319 15 0 chr3 115461522 115461657 -44138126 - LTR16A LTR ERVL -16 435 299 8 1465 268 298 63 47 chr3 115462243 115462370 -44137413 + Lx8 LINE L1 7156 7284 -189 8 1465 1309 189 93 54 chr3 115462571 115462726 -44137057 + ORR1D1 LTR MaLR 8 165 -209 8 1465 498 17 0 0 chr3 115462726 115462785 -44136998 + (TC)n Simple_repeat Simple_repeat 1 59 0 8 1465 1309 189 93 54 chr3 115462785 115462982 -44136801 + ORR1D1 LTR MaLR 166 374 0 8 1465 261 0 0 0 chr3 115463640 115463669 -44136114 + (TGAA)n Simple_repeat Simple_repeat 1 29 0 8 1465 200 276 0 0 chr3 115464158 115464216 -44135567 + (CATA)n Simple_repeat Simple_repeat 2 59 0 8 1465 528 258 60 85 chr3 115464987 115465186 -44134597 + B3A SINE B2 1 194 -4 8 1465 213 176 37 56 chr3 115466640 115466694 -44133089 - PB1D10 SINE Alu 0 117 65 8 1465 27 49 0 0 chr3 115466928 115466969 -44132814 + AT_rich Low_complexity Low_complexity 1 41 0 8 1465 233 57 29 0 chr3 115467257 115467292 -44132491 + (TG)n Simple_repeat Simple_repeat 1 36 0 8 1465 382 315 7 44 chr3 115468055 115468191 -44131592 + RSINE1 SINE B4 12 142 -23 8 1465 843 86 0 0 chr3 115469593 115469710 -44130073 + (TTTC)n Simple_repeat Simple_repeat 3 119 0 8 1465 459 248 25 17 chr3 115470341 115470460 -44129323 + RSINE1 SINE B4 11 130 -35 8 1465 21 0 0 0 chr3 115470812 115470833 -44128950 + AT_rich Low_complexity Low_complexity 1 21 0 8 1465 234 0 0 0 chr3 115470944 115470970 -44128813 + (A)n Simple_repeat Simple_repeat 1 26 0 8 1465 398 316 0 0 chr3 115471076 115471174 -44128609 + ID_B1 SINE B4 93 190 -34 8 1465 207 69 0 0 chr3 115471651 115471680 -44128103 + (A)n Simple_repeat Simple_repeat 1 29 0 8 1465 198 0 0 0 chr3 115473026 115473048 -44126735 + (TTG)n Simple_repeat Simple_repeat 2 23 0 8 1465 5776 37 21 0 chr3 115473128 115473806 -44125977 - L1_Mus1 LINE L1 -2 6565 5874 8 1465 265 338 0 0 chr3 115473875 115473949 -44125834 - B3A SINE B2 -124 74 1 8 183 2080 158 151 32 chr3 115474113 115474555 -44125228 + Lx4A LINE L1 6593 7058 0 8 1466 585 280 182 0 chr3 115474764 115475000 -44124783 - B4 SINE B4 -12 280 2 8 1466 784 310 140 23 chr3 115475359 115475831 -44123952 - MT2A LTR ERVL -6 527 1 8 1466 1433 221 26 63 chr3 115475949 115476330 -44123453 + MTE2b LTR MaLR 10 376 -3 8 1466 711 291 111 40 chr3 115476532 115476829 -44122954 + MER2 DNA MER2_type 28 345 0 8 1466 356 208 21 10 chr3 115478167 115478264 -44121519 + L1MB4 LINE L1 6083 6180 0 8 1466 363 301 25 37 chr3 115478382 115478544 -44121239 + RSINE1 SINE B4 2 161 -4 8 1466 333 68 0 0 chr3 115478571 115478615 -44121168 + (GGA)n Simple_repeat Simple_repeat 2 45 0 8 1466 189 0 0 0 chr3 115478613 115478634 -44121149 + (CGA)n Simple_repeat Simple_repeat 2 22 0 8 1466 22 70 0 0 chr3 115479219 115479262 -44120521 + AT_rich Low_complexity Low_complexity 1 43 0 8 1466 353 364 61 31 chr3 115480143 115480258 -44119525 - B4 SINE B4 -22 270 147 8 1466 264 40 0 57 chr3 115480258 115480311 -44119472 + (TTTG)n Simple_repeat Simple_repeat 4 53 0 8 1466 374 299 26 27 chr3 115480311 115480456 -44119327 - B4A SINE B4 -146 146 2 8 1466 28 29 0 0 chr3 115480887 115480922 -44118861 + AT_rich Low_complexity Low_complexity 1 35 0 8 1466 426 218 0 0 chr3 115480977 115481087 -44118696 + (CA)n Simple_repeat Simple_repeat 2 111 0 8 1466 357 241 45 11 chr3 115481228 115481316 -44118467 + PB1D10 SINE Alu 19 109 -8 8 1466 432 0 0 0 chr3 115481546 115481594 -44118189 + (TG)n Simple_repeat Simple_repeat 2 49 0 8 1466 371 291 125 30 chr3 115481611 115481972 -44117811 + Charlie2b DNA MER1_type 2258 2652 -130 8 1466 390 242 53 23 chr3 115482110 115482241 -44117542 + B3A SINE B2 64 198 0 8 1466 251 324 44 0 chr3 115483458 115483526 -44116257 - ID4 SINE ID -9 74 4 8 1466 264 299 53 46 chr3 115483607 115483758 -44116025 - L1MC5 LINE L1 -56 7905 7754 8 1466 212 204 0 22 chr3 115484525 115484570 -44115213 + A-rich Low_complexity Low_complexity 2 45 0 8 1466 600 255 81 41 chr3 115486142 115486314 -44113469 - B3A SINE B2 -19 179 1 8 1466 1046 96 41 12 chr3 115486325 115486494 -44113289 - B2_Mm2 SINE B2 -21 174 1 8 1466 287 242 118 9 chr3 115486541 115486666 -44113117 + MIR SINE MIR 33 162 -100 8 1466 355 273 22 11 chr3 115487152 115487241 -44112542 + RSINE1 SINE B4 56 145 -20 8 1466 336 102 0 0 chr3 115487253 115487302 -44112481 + (CA)n Simple_repeat Simple_repeat 1 49 0 8 1466 237 65 0 0 chr3 115487367 115487398 -44112385 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 8 1466 234 131 16 47 chr3 115487593 115487657 -44112126 + (CATA)n Simple_repeat Simple_repeat 4 65 0 8 1466 290 284 77 54 chr3 115488144 115488274 -44111509 + MLT1E2 LTR MaLR 87 219 -408 8 1466 710 251 49 156 chr3 115488568 115488894 -44110889 + B4A SINE B4 2 292 0 8 1466 207 0 0 0 chr3 115488915 115488938 -44110845 + (CA)n Simple_repeat Simple_repeat 1 23 0 8 1466 3854 57 2 2 chr3 115489057 115489529 -44110254 - L1_Mus2 LINE L1 0 6566 6095 8 1466 24 0 0 0 chr3 115489583 115489607 -44110176 + AT_rich Low_complexity Low_complexity 1 24 0 8 1466 621 241 77 48 chr3 115489926 115490080 -44109703 + B3 SINE B2 2 163 -53 8 1466 303 28 0 0 chr3 115490080 115490116 -44109667 + (CA)n Simple_repeat Simple_repeat 1 36 0 8 1466 621 241 77 48 chr3 115490116 115490170 -44109613 + B3 SINE B2 164 215 -1 8 1466 21 0 0 0 chr3 115490170 115490191 -44109592 + AT_rich Low_complexity Low_complexity 1 21 0 8 1466 886 260 40 11 chr3 115490430 115490683 -44109100 + L1MA4A LINE L1 5662 5918 -256 8 1466 1114 94 18 0 chr3 115490695 115490928 -44108855 + (TAGA)n Simple_repeat Simple_repeat 1 237 0 8 1466 621 96 0 0 chr3 115491188 115491282 -44108501 + (CA)n Simple_repeat Simple_repeat 2 95 0 8 1466 253 186 16 102 chr3 115491766 115491952 -44107831 + CT-rich Low_complexity Low_complexity 3 172 0 8 1466 535 159 11 39 chr3 115492368 115492735 -44107048 + (CAGAGA)n Simple_repeat Simple_repeat 1 356 0 8 1466 186 118 0 0 chr3 115492735 115492769 -44107014 + (CAGA)n Simple_repeat Simple_repeat 1 34 0 8 1466 301 282 12 12 chr3 115493070 115493156 -44106627 + PB1D10 SINE Alu 1 86 -31 9 1466 480 300 45 107 chr3 115493314 115493624 -44106159 - B4 SINE B4 0 292 2 9 1466 297 353 107 40 chr3 115493724 115494180 -44105603 - LTR16D LTR ERVL 0 651 99 9 1466 312 83 0 0 chr3 115494816 115494864 -44104919 + (TTTG)n Simple_repeat Simple_repeat 1 48 0 9 1466 877 189 0 0 chr3 115494865 115495008 -44104775 - B1_Mur4 SINE Alu -7 143 1 9 1466 852 121 0 0 chr3 115495075 115495207 -44104576 + (TTC)n Simple_repeat Simple_repeat 1 132 0 9 1466 771 167 21 7 chr3 115495211 115495356 -44104427 - B1_Mus1 SINE Alu 0 148 2 9 1466 318 152 0 0 chr3 115495530 115495589 -44104194 + GA-rich Low_complexity Low_complexity 3 61 0 9 1466 21 0 0 0 chr3 115496155 115496176 -44103607 + AT_rich Low_complexity Low_complexity 1 21 0 9 1466 450 0 0 0 chr3 115496250 115496300 -44103483 + (TG)n Simple_repeat Simple_repeat 1 50 0 9 1466 221 83 28 0 chr3 115497017 115497053 -44102730 + (CAA)n Simple_repeat Simple_repeat 3 39 0 9 1466 1121 311 57 41 chr3 115497053 115497613 -44102170 - L1MB3 LINE L1 -22 6161 5593 9 1466 536 294 43 51 chr3 115497657 115497935 -44101848 - ORR1E LTR MaLR -92 278 1 9 1466 2612 268 122 43 chr3 115497998 115499052 -44100731 - Lx8 LINE L1 0 7473 6336 9 1466 215 164 31 62 chr3 115499094 115499159 -44100624 + T-rich Low_complexity Low_complexity 1 63 0 9 1466 852 143 0 45 chr3 115499159 115499313 -44100470 - B1_Mus2 SINE Alu 0 147 1 9 1466 1498 105 13 0 chr3 115499771 115500000 -44099783 - ORR1A2 LTR MaLR 0 327 96 9 1466 675 109 33 14 chr3 115500000 115500115 -44099668 - ORR1A2 LTR MaLR -246 148 1 1 1466 1125 143 81 0 chr3 115500419 115500628 -44099155 - URR1A DNA MER1_type 0 226 1 2 1466 246 364 63 9 chr3 115501393 115501504 -44098279 - PB1D10 SINE Alu 0 117 1 3 1466 320 284 111 24 chr3 115501515 115501761 -44098022 - L1MB1 LINE L1 -42 6138 5866 4 1466 957 142 217 5 chr3 115502612 115502796 -44096987 - URR1A DNA MER1_type 0 226 4 5 1466 541 288 0 41 chr3 115503074 115503211 -44096572 + ID_B1 SINE B4 84 215 -9 6 1466 279 0 0 0 chr3 115503211 115503242 -44096541 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 7 1466 309 137 20 40 chr3 115503280 115503379 -44096404 + (CAGAGA)n Simple_repeat Simple_repeat 6 102 0 8 1466 433 196 5 27 chr3 115503468 115503652 -44096131 + (CAGA)n Simple_repeat Simple_repeat 1 180 0 9 1466 312 308 13 0 chr3 115504715 115504793 -44094990 + ID4_ SINE ID 4 82 -1 1 1466 195 418 50 0 chr3 115506022 115506163 -44093620 - L2 LINE L2 -896 2523 2376 1 1466 878 273 62 112 chr3 115506298 115506682 -44093101 + MTE2a LTR MaLR 8 372 -7 1 1466 252 304 59 34 chr3 115506951 115507070 -44092713 + MLT1A0 LTR MaLR 15 136 -238 1 1466 21 36 0 0 chr3 115508059 115508087 -44091696 + AT_rich Low_complexity Low_complexity 1 28 0 1 1466 373 244 12 0 chr3 115508706 115508788 -44090995 - PB1D10 SINE Alu -34 83 1 1 1466 418 248 94 9 chr3 115509262 115509368 -44090415 - PB1D9 SINE Alu 0 120 6 1 1466 3607 162 49 18 chr3 115509516 115509727 -44090056 - Lx3B LINE L1 -54 6922 6751 1 1466 481 15 15 15 chr3 115509727 115509794 -44089989 + (TG)n Simple_repeat Simple_repeat 2 68 0 1 1466 3607 118 43 11 chr3 115509794 115510191 -44089592 - Lx3B LINE L1 -226 6750 5998 1 1466 192 40 0 0 chr3 115510191 115510216 -44089567 + (T)n Simple_repeat Simple_repeat 1 25 0 1 1466 4120 90 0 26 chr3 115510233 115510956 -44088827 - Lx3B LINE L1 -826 6147 5447 1 1466 1874 268 97 38 chr3 115511062 115511822 -44087961 + L1MC1 LINE L1 5511 6315 -18 2 1466 2399 139 38 10 chr3 115512309 115512708 -44087075 + MTC LTR MaLR 1 410 -11 2 1466 853 295 52 31 chr3 115512708 115513033 -44086750 - L1MB5 LINE L1 -109 6065 5734 2 1466 262 302 84 108 chr3 115513214 115513381 -44086402 - MTEb LTR MaLR -7 372 210 2 1466 375 244 134 24 chr3 115513336 115513474 -44086309 + B3A SINE B2 69 214 -2 2 1466 202 300 45 0 chr3 115513624 115513709 -44086074 - MIRb SINE MIR -3 259 172 2 1466 336 48 0 0 chr3 115513725 115513767 -44086016 + (TTTG)n Simple_repeat Simple_repeat 3 44 0 2 1466 398 303 50 56 chr3 115513796 115513957 -44085826 - RSINE1 SINE B4 -2 163 4 2 1466 311 252 63 72 chr3 115514093 115514204 -44085579 - PB1D9 SINE Alu 0 120 11 2 1466 243 0 0 0 chr3 115515443 115515470 -44084313 + (TAAAA)n Simple_repeat Simple_repeat 4 30 0 2 1466 325 238 71 100 chr3 115515766 115515906 -44083877 + MT2B2 LTR ERVL 125 260 -324 3 1466 635 268 29 7 chr3 115515807 115515946 -44083837 + B1_Mur1 SINE Alu 8 149 0 3 1466 219 218 0 0 chr3 115515963 115516018 -44083765 + GA-rich Low_complexity Low_complexity 3 57 0 3 1466 201 74 0 0 chr3 115516379 115516406 -44083377 + (TAA)n Simple_repeat Simple_repeat 1 27 0 3 1466 332 222 24 12 chr3 115516720 115516802 -44082981 - MTE2b LTR MaLR 0 379 297 3 1466 476 257 9 9 chr3 115517171 115517285 -44082498 - Lx8 LINE L1 -191 7282 7169 3 1466 334 176 422 34 chr3 115517474 115517505 -44082278 - B3 SINE B2 -2 214 183 3 1466 330 26 0 0 chr3 115517505 115517544 -44082239 + (TATG)n Simple_repeat Simple_repeat 4 42 0 3 1466 334 176 422 34 chr3 115517544 115517659 -44082124 - B3 SINE B2 -34 182 13 3 1466 414 139 0 0 chr3 115517812 115517884 -44081899 + (CA)n Simple_repeat Simple_repeat 2 73 0 3 1466 456 167 122 0 chr3 115519260 115519350 -44080433 + PB1D9 SINE Alu 11 111 -9 3 1466 368 320 55 51 chr3 115519395 115519632 -44080151 - RMER17C LTR ERVK -36 374 137 4 1466 453 36 0 0 chr3 115519649 115519704 -44080079 + (GA)n Simple_repeat Simple_repeat 1 55 0 4 1466 568 221 0 0 chr3 115520318 115520422 -44079361 - B1_Mur1 SINE Alu 0 149 46 4 1466 252 0 0 0 chr3 115520980 115521008 -44078775 + (TG)n Simple_repeat Simple_repeat 1 28 0 4 1466 202 206 0 0 chr3 115521198 115521232 -44078551 + (CACG)n Simple_repeat Simple_repeat 2 35 0 4 1466 337 346 102 47 chr3 115523662 115524026 -44075757 - L2 LINE L2 -356 3063 2680 4 1466 220 286 36 0 chr3 115524178 115524234 -44075549 + RSINE1 SINE B4 45 102 -63 4 1466 324 0 0 0 chr3 115524243 115524279 -44075504 + (TG)n Simple_repeat Simple_repeat 1 36 0 4 1466 523 222 28 0 chr3 115524279 115524380 -44075403 - RSINE1 SINE B4 -53 112 9 4 1466 334 352 14 14 chr3 115524538 115524682 -44075101 + B1F SINE Alu 6 149 0 4 1466 396 0 0 0 chr3 115525035 115525079 -44074704 + (TTTA)n Simple_repeat Simple_repeat 2 45 0 5 1466 323 260 14 0 chr3 115525103 115525176 -44074607 - RSINE1 SINE B4 -77 88 15 5 1466 317 247 0 61 chr3 115526409 115526491 -44073292 - RSINE1 SINE B4 -86 79 3 5 1466 317 286 0 0 chr3 115527012 115527089 -44072694 - RSINE1 SINE B4 -33 132 56 5 1466 251 207 35 0 chr3 115527089 115527147 -44072636 + RSINE1 SINE B4 102 161 -4 4 1466 499 180 0 18 chr3 115527408 115527521 -44072262 + (TA)n Simple_repeat Simple_repeat 2 112 0 5 1466 310 283 130 44 chr3 115528324 115528529 -44071254 - MIR SINE MIR -38 224 4 5 1466 609 301 49 5 chr3 115528660 115528844 -44070939 + B3A SINE B2 1 192 -6 5 1466 291 296 28 0 chr3 115529420 115529491 -44070292 - B1F1 SINE Alu -31 118 46 5 1466 417 39 0 0 chr3 115529603 115529654 -44070129 + (TCTA)n Simple_repeat Simple_repeat 2 52 0 5 1466 1018 157 361 4 chr3 115530129 115530392 -44069391 - ORR1D1 LTR MaLR -17 357 1 5 1466 527 284 551 5 chr3 115530451 115530632 -44069151 + B4A SINE B4 2 281 -11 6 1466 613 286 29 29 chr3 115530840 115531013 -44068770 + B3A SINE B2 2 174 -24 6 1466 900 181 14 0 chr3 115531427 115531571 -44068212 - B1_Mur4 SINE Alu 0 150 5 6 1466 801 190 213 0 chr3 115531716 115531890 -44067893 + B3 SINE B2 1 211 -5 6 1466 392 300 105 50 chr3 115532463 115532837 -44066946 + Lx9 LINE L1 7109 7638 -6 6 1466 1393 82 11 16 chr3 115532853 115533038 -44066745 + B2_Mm1t SINE B2 1 184 -9 6 1466 215 267 12 0 chr3 115533265 115533351 -44066432 + (TG)n Simple_repeat Simple_repeat 1 87 0 6 1466 896 275 90 0 chr3 115533351 115533584 -44066199 - B4A SINE B4 0 292 39 6 1466 236 203 288 0 chr3 115534124 115534156 -44065627 - ID4 SINE ID -6 77 46 6 1466 669 58 0 0 chr3 115534156 115534242 -44065541 + (CCCTAA)n Simple_repeat Simple_repeat 3 88 0 6 1466 236 203 288 0 chr3 115534242 115534268 -44065515 - ID4 SINE ID -38 45 3 6 1466 526 213 62 16 chr3 115534331 115534460 -44065323 + L1MCa LINE L1 24 158 -6350 7 1466 1391 240 52 18 chr3 115534831 115535277 -44064506 + L1MCa LINE L1 799 1259 -5249 7 1466 713 248 199 77 chr3 115535282 115535460 -44064323 + MLT1A0 LTR MaLR 1 203 -162 7 1466 1334 93 38 11 chr3 115535460 115535644 -44064139 + B2_Mm2 SINE B2 1 189 -6 7 1466 713 248 199 77 chr3 115535644 115535762 -44064021 + MLT1A0 LTR MaLR 204 333 -32 7 1466 678 148 0 0 chr3 115535762 115535877 -44063906 + (TAGA)n Simple_repeat Simple_repeat 3 117 0 7 1466 478 296 19 115 chr3 115535923 115536132 -44063651 + MLT1A0-int LTR MaLR 23 213 -1522 7 1466 3573 114 44 15 chr3 115536132 115536650 -44063133 + RMER16 LTR ERVK 1 533 0 7 1466 478 296 19 115 chr3 115536650 115536700 -44063083 + MLT1A0-int LTR MaLR 214 257 -1478 7 1466 406 310 0 10 chr3 115536702 115536803 -44062980 - PB1D10 SINE Alu -8 109 10 7 1466 1305 276 124 45 chr3 115536776 115537302 -44062481 + MLT1A0-int LTR MaLR 216 769 -966 7 1466 2332 78 58 6 chr3 115537617 115537928 -44061855 + ORR1A2 LTR MaLR 1 327 0 7 1466 389 360 60 30 chr3 115537972 115538207 -44061576 + MLT1A0-int LTR MaLR 1321 1562 -173 7 1466 1048 249 88 66 chr3 115538219 115538671 -44061112 - RLTR12B LTR ERVK -25 503 42 7 1466 240 77 26 0 chr3 115538725 115538764 -44061019 + MLT1A0-int LTR MaLR 1591 1630 -105 7 1466 433 314 43 7 chr3 115538787 115538851 -44060932 + RMER30 DNA MER1_type 28 97 -105 7 1466 413 241 0 0 chr3 115538851 115538934 -44060849 - ID4 SINE ID 0 83 1 7 1466 433 314 43 7 chr3 115538934 115539007 -44060776 + RMER30 DNA MER1_type 98 170 -32 7 1466 1534 261 125 48 chr3 115539015 115540163 -44059620 + L1MCa LINE L1 2476 3773 -2548 7 1466 336 103 0 0 chr3 115540831 115540889 -44058894 + (TG)n Simple_repeat Simple_repeat 1 58 0 8 1466 368 246 176 69 chr3 115540995 115541126 -44058657 - LTR48 LTR ERV1 -642 145 1 8 1466 631 273 141 33 chr3 115541192 115541491 -44058292 + MER119 DNA MER1_type 1 331 -252 8 1466 246 45 0 22 chr3 115542036 115542091 -44057692 + L1_Mus2 LINE L1 6526 6582 0 8 1466 2584 127 61 11 chr3 115542615 115542990 -44056793 + ORR1B1 LTR MaLR 1 394 0 8 1466 3096 35 3 11 chr3 115543523 115543872 -44055911 + ORR1A1 LTR MaLR 1 346 0 8 1466 2368 105 45 0 chr3 115543905 115544218 -44055565 + ORR1A2 LTR MaLR 1 327 0 8 1466 387 0 0 0 chr3 115544578 115544621 -44055162 + (CA)n Simple_repeat Simple_repeat 2 44 0 8 1466 213 273 0 0 chr3 115545128 115545172 -44054611 + polypurine Low_complexity Low_complexity 6 49 0 8 1466 234 0 0 0 chr3 115545172 115545198 -44054585 + (GA)n Simple_repeat Simple_repeat 1 26 0 8 1466 339 25 0 0 chr3 115545305 115545345 -44054438 + (TGAG)n Simple_repeat Simple_repeat 4 43 0 9 1466 22 0 0 0 chr3 115546158 115546180 -44053603 + AT_rich Low_complexity Low_complexity 1 22 0 9 1466 420 217 11 0 chr3 115546629 115546721 -44053062 + ORR1E LTR MaLR 267 359 0 9 1466 189 171 0 0 chr3 115548444 115548479 -44051304 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 9 1466 488 16 16 0 chr3 115548694 115548755 -44051028 + (TC)n Simple_repeat Simple_repeat 2 63 0 9 1466 1122 83 28 0 chr3 115549585 115549729 -44050054 + B1_Mus1 SINE Alu 1 148 0 9 1466 457 186 0 78 chr3 115549729 115549916 -44049867 + A-rich Low_complexity Low_complexity 4 175 0 9 1466 268 341 40 8 chr3 115550050 115550174 -44049609 + MIR SINE MIR 119 246 -16 9 1466 454 237 199 37 chr3 115550215 115550351 -44049432 - RSINE1 SINE B4 0 165 8 9 1466 200 211 0 0 chr3 115550838 115550876 -44048907 + (CATA)n Simple_repeat Simple_repeat 3 40 0 9 1466 706 294 22 6 chr3 115550885 115551063 -44048720 - B3A SINE B2 -16 182 2 1 1466 381 93 0 0 chr3 115552634 115552688 -44047095 + (TC)n Simple_repeat Simple_repeat 2 55 0 1 1466 736 178 232 6 chr3 115552883 115553064 -44046719 + ID_B1 SINE B4 2 223 -1 1 1466 204 353 103 6 chr3 115553166 115553340 -44046443 - MIRb SINE MIR -60 208 18 1 1466 309 275 53 20 chr3 115553862 115553996 -44045787 + MIRb SINE MIR 34 175 -93 1 1466 786 234 147 49 chr3 115554489 115554754 -44045029 - B4A SINE B4 0 292 2 1 1466 3065 78 5 3 chr3 115554985 115555371 -44044412 - L1_Mus3 LINE L1 0 6638 6252 1 1466 315 216 0 0 chr3 115555459 115555575 -44044208 + (CATATA)n Simple_repeat Simple_repeat 5 120 0 1 1466 22 0 0 0 chr3 115555639 115555661 -44044122 + AT_rich Low_complexity Low_complexity 1 22 0 1 1466 215 31 31 0 chr3 115555702 115555734 -44044049 + (CAAAA)n Simple_repeat Simple_repeat 1 33 0 1 1466 368 301 35 0 chr3 115555957 115556070 -44043713 - B1F SINE Alu -14 135 19 1 1466 1241 171 18 18 chr3 115556093 115556314 -44043469 - URR1B DNA MER1_type 0 225 5 1 1466 249 33 0 0 chr3 115556425 115556455 -44043328 + (T)n Simple_repeat Simple_repeat 1 30 0 1 1466 1192 56 28 0 chr3 115556455 115556599 -44043184 - B1_Mus1 SINE Alu 0 148 1 1 1466 1525 175 31 3 chr3 115556844 115557136 -44042647 + ORR1A3 LTR MaLR 19 318 -8 1 1466 228 232 169 28 chr3 115557275 115557346 -44042437 + RSINE1 SINE B4 54 134 -31 1 1466 503 296 167 11 chr3 115557505 115557679 -44042104 + MER20 DNA MER1_type 8 208 -11 1 1466 1228 55 7 0 chr3 115558259 115558405 -44041378 + B1_Mm SINE Alu 1 147 0 1 1466 1248 156 98 72 chr3 115561366 115561671 -44038112 - Lx4B LINE L1 -4 7054 6742 1 1466 779 249 69 136 chr3 115561697 115562147 -44037636 + RLTR23 LTR ERV1 11 430 0 1 1466 2070 122 3 0 chr3 115562147 115562433 -44037350 - Lx5 LINE L1 -328 6722 6436 1 1466 619 244 8 8 chr3 115562639 115562763 -44037020 - RSINE1 SINE B4 -38 127 4 1 1466 251 114 0 0 chr3 115562840 115562875 -44036908 + PB1D9 SINE Alu 9 43 -77 1 1466 261 0 0 0 chr3 115562898 115562927 -44036856 + (CAA)n Simple_repeat Simple_repeat 2 30 0 1 1466 693 187 75 0 chr3 115562954 115563088 -44036695 - B1_Mur2 SINE Alu -2 147 4 1 1466 303 93 0 0 chr3 115563097 115563140 -44036643 + (T)n Simple_repeat Simple_repeat 1 43 0 1 1466 1274 68 0 0 chr3 115563140 115563288 -44036495 - B1_Mus1 SINE Alu 0 148 1 1 1466 842 193 84 220 chr3 115563290 115563702 -44036081 + MT2A LTR ERVL 20 546 -55 1 1466 393 22 0 0 chr3 115563702 115563748 -44036035 + (CATA)n Simple_repeat Simple_repeat 3 48 0 1 1466 3011 105 253 23 chr3 115563751 115563977 -44035806 - RMER6C LTR ERVK -4 686 339 1 1466 324 0 0 0 chr3 115563977 115564013 -44035770 + (TC)n Simple_repeat Simple_repeat 2 37 0 1 1466 423 0 0 0 chr3 115564013 115564059 -44035724 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 1466 3011 105 253 23 chr3 115564059 115564388 -44035395 - RMER6C LTR ERVK -352 338 3 1 1466 641 185 86 242 chr3 115564388 115564478 -44035305 + MT2A LTR ERVL 547 598 -3 1 1466 326 23 23 0 chr3 115564634 115564677 -44035106 + (ATG)n Simple_repeat Simple_repeat 2 45 0 1 1466 2149 189 121 43 chr3 115564748 115565261 -44034522 - Lx5 LINE L1 -3 7047 6495 1 1466 257 312 79 116 chr3 115565261 115565590 -44034193 + ORR1E LTR MaLR 47 367 -12 1 1466 297 336 98 45 chr3 115565748 115565860 -44033923 - PB1D7 SINE Alu 0 120 3 1 1466 2765 190 73 0 chr3 115565868 115566389 -44033394 + Lx5 LINE L1 6207 6765 -285 1 1466 338 320 36 87 chr3 115566962 115567181 -44032602 + L1MEc LINE L1 674 881 -5519 1 1466 7491 66 5 8 chr3 115567301 115568328 -44031455 + L1Md_A LINE L1 4594 5586 -297 1 1466 9658 1 0 0 chr3 115568328 115569324 -44030459 + L1Md_A LINE L1 5587 6582 0 1 1466 24 0 0 0 chr3 115569324 115569348 -44030435 + AT_rich Low_complexity Low_complexity 1 24 0 1 1466 413 269 120 77 chr3 115569348 115569791 -44029992 + L1MEg LINE L1 1149 1610 -4632 1 1466 1501 189 100 15 chr3 115569869 115570208 -44029575 + ORR1D1 LTR MaLR 1 368 -6 1 1466 290 312 50 0 chr3 115570604 115570684 -44029099 - RSINE1 SINE B4 -4 161 78 1 1466 306 0 0 0 chr3 115570712 115570746 -44029037 + (TG)n Simple_repeat Simple_repeat 2 35 0 1 1466 771 222 20 23 chr3 115570783 115570975 -44028808 - B3 SINE B2 -5 190 1 1 1466 473 236 90 52 chr3 115571063 115571197 -44028586 - Lx8 LINE L1 -576 6897 6759 1 1466 3609 18 15 0 chr3 115571432 115571822 -44027961 + MTA_Mm LTR MaLR 1 396 0 1 1466 1023 74 65 14 chr3 115571961 115572099 -44027684 + B1_Mm SINE Alu 1 145 -2 1 1466 240 59 0 0 chr3 115572103 115572137 -44027646 + (A)n Simple_repeat Simple_repeat 1 34 0 1 1466 252 122 0 0 chr3 115572684 115572725 -44027058 + (T)n Simple_repeat Simple_repeat 1 41 0 1 1466 3287 120 45 0 chr3 115572923 115573416 -44026367 - L1_Mm LINE L1 -995 4888 4374 1 1466 6773 38 3 5 chr3 115573498 115574267 -44025516 + L1Md_F2 LINE L1 5816 6582 0 1 1466 342 45 0 0 chr3 115574300 115574344 -44025439 + (TAAAA)n Simple_repeat Simple_repeat 2 45 0 1 1466 465 345 60 52 chr3 115574344 115574692 -44025091 + MLT1C LTR MaLR 84 434 -33 1 1466 2237 94 0 73 chr3 115574778 115575122 -44024661 + ORR1A2 LTR MaLR 1 319 -8 1 1466 319 237 102 20 chr3 115575182 115575367 -44024416 + L1MEg LINE L1 2149 2324 -3822 1 1466 282 311 28 12 chr3 115575364 115575515 -44024268 - L1M3 LINE L1 -3281 2862 2710 1 1466 213 39 0 0 chr3 115575590 115575616 -44024167 + (CG)n Simple_repeat Simple_repeat 2 27 0 1 1466 297 0 0 0 chr3 115575616 115575648 -44024135 + (CA)n Simple_repeat Simple_repeat 1 33 0 1 1466 222 37 0 0 chr3 115575701 115575728 -44024055 + (CAAA)n Simple_repeat Simple_repeat 3 29 0 1 1466 697 272 82 60 chr3 115575738 115576188 -44023595 + L1MA4 LINE L1 5476 5911 -1785 1 1466 851 140 8 23 chr3 115576581 115576713 -44023070 + B1_Mus2 SINE Alu 5 134 -13 1 1466 216 0 0 0 chr3 115576713 115576737 -44023046 + (CAAAA)n Simple_repeat Simple_repeat 1 24 0 1 1466 330 317 55 99 chr3 115576858 115577131 -44022652 + ORR1E LTR MaLR 97 357 -2 1 1466 322 291 77 144 chr3 115577258 115577543 -44022240 - MLT2C2 LTR ERVL -5 459 194 1 1466 1888 216 40 28 chr3 115577558 115578054 -44021729 + L1_Rod LINE L1 2286 2787 -3060 1 1466 1837 142 166 3 chr3 115578049 115578417 -44021366 + Lx9 LINE L1 7206 7633 -11 1 1466 1071 92 17 11 chr3 115578927 115579102 -44020681 + (TTTC)n Simple_repeat Simple_repeat 3 178 0 1 1466 841 238 15 50 chr3 115579701 115579900 -44019883 - B3A SINE B2 -6 192 1 1 1466 1420 94 14 36 chr3 115579939 115580159 -44019624 + L1_Mus3 LINE L1 6417 6631 -7 1 1466 649 310 29 19 chr3 115580186 115580393 -44019390 + ID_B1 SINE B4 15 223 -1 1 1466 2035 255 117 42 chr3 115580420 115581004 -44018779 + MTE-int LTR MaLR 920 1548 -32 1 1466 4113 151 15 30 chr3 115581004 115581729 -44018054 - RMER6A LTR ERVK 0 756 43 1 1466 2655 101 61 52 chr3 115581735 115582215 -44017568 - RMER16 LTR ERVK -6 527 1 1 1466 328 179 0 0 chr3 115582215 115582263 -44017520 - RMER6A LTR ERVK -413 48 1 1 1466 683 260 220 43 chr3 115582623 115582663 -44017120 - ORR1D1 LTR MaLR 0 359 320 1 1466 1507 66 49 0 chr3 115582663 115582846 -44016937 + B2_Mm1t SINE B2 1 192 -1 1 1466 976 215 100 14 chr3 115582846 115583110 -44016673 - ORR1D1 LTR MaLR -40 319 1 1 1466 6458 205 51 25 chr3 115583110 115584445 -44015338 - ORR1D1-int LTR MaLR 0 1370 1 1 1466 2044 192 19 14 chr3 115584445 115584815 -44014968 - ORR1D1 LTR MaLR 0 374 3 1 1466 483 151 247 0 chr3 115584821 115584914 -44014869 - B3 SINE B2 -99 117 2 1 1466 1200 74 0 0 chr3 115585158 115585306 -44014477 + B1_Mus1 SINE Alu 1 148 0 1 1466 680 97 51 13 chr3 115585306 115585463 -44014320 + GA-rich Low_complexity Low_complexity 1 163 0 1 1466 674 238 60 73 chr3 115585712 115585930 -44013853 + B3 SINE B2 2 216 0 1 1466 279 0 0 0 chr3 115586139 115586170 -44013613 + (TG)n Simple_repeat Simple_repeat 2 32 0 1 1466 287 266 114 67 chr3 115587180 115587329 -44012454 + L1ME2z LINE L1 6248 6403 -41 1 1466 657 234 180 16 chr3 115588192 115588569 -44011214 - Lx7 LINE L1 -20 7676 7265 1 1466 960 219 11 0 chr3 115589191 115589369 -44010414 + B3 SINE B2 30 209 -7 1 1466 726 93 3 21 chr3 115589404 115589529 -44010254 - B1_Mus1 SINE Alu -5 115 1 1 1466 455 210 121 40 chr3 115589693 115589842 -44009941 - RSINE1 SINE B4 -1 164 4 1 1466 334 254 173 50 chr3 115589867 115590134 -44009649 - L1MD LINE L1 -888 5258 4965 1 1466 283 23 0 83 chr3 115592539 115592587 -44007196 + B1_Mus2 SINE Alu 104 147 0 1 1466 1133 87 0 0 chr3 115592609 115592747 -44007036 + B1_Mus1 SINE Alu 1 138 -10 1 1466 339 232 0 35 chr3 115593251 115593336 -44006447 - ID4 SINE ID 0 83 2 1 1466 312 279 15 0 chr3 115594317 115594385 -44005398 + RSINE1 SINE B4 63 131 -34 1 1466 360 0 0 0 chr3 115595529 115595569 -44004214 + (TG)n Simple_repeat Simple_repeat 2 41 0 1 1466 478 283 97 10 chr3 115596816 115597023 -44002760 + MER5C DNA MER1_type 4 228 -85 1 1466 487 246 101 121 chr3 115597571 115597911 -44001872 - ORR1E LTR MaLR 0 379 7 1 1466 236 281 130 33 chr3 115599250 115599342 -44000441 - ID_B1 SINE B4 -9 215 115 1 1466 401 228 91 55 chr3 115599597 115599714 -44000069 - PB1 SINE Alu -1 126 7 1 1466 22 56 0 0 chr3 115600187 115600223 -43999560 + AT_rich Low_complexity Low_complexity 1 36 0 1 1466 246 32 0 0 chr3 115600542 115600573 -43999210 + (T)n Simple_repeat Simple_repeat 1 31 0 1 1466 1144 86 0 0 chr3 115600576 115600716 -43999067 - B1_Mus2 SINE Alu -6 141 2 1 1466 21 0 0 0 chr3 115601159 115601180 -43998603 + AT_rich Low_complexity Low_complexity 1 21 0 1 1466 378 0 0 0 chr3 115601691 115601733 -43998050 + (CA)n Simple_repeat Simple_repeat 2 43 0 1 1466 450 289 109 38 chr3 115601967 115602280 -43997503 + L1MA5 LINE L1 5915 6249 -51 2 1466 423 308 211 38 chr3 115602927 115603458 -43996325 - Kanga1b DNA Tc2 -153 626 4 2 1466 360 302 142 8 chr3 115603534 115603654 -43996129 + RSINE1 SINE B4 11 146 -19 2 1466 187 29 0 79 chr3 115604120 115604158 -43995625 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 2 1466 210 200 238 48 chr3 115604627 115604732 -43995051 - MER5A DNA MER1_type -62 127 3 2 1467 235 164 55 0 chr3 115605802 115605857 -43993926 + T-rich Low_complexity Low_complexity 3 60 0 2 1467 506 298 12 42 chr3 115605883 115606051 -43993732 - RSINE1 SINE B4 0 165 3 2 1467 447 282 18 9 chr3 115606055 115606166 -43993617 - PB1D10 SINE Alu -1 116 5 2 1467 185 0 40 0 chr3 115606906 115606931 -43992852 + (TA)n Simple_repeat Simple_repeat 2 27 0 2 1467 202 228 17 50 chr3 115608848 115608908 -43990875 + MIRm SINE MIR 217 274 -2 2 1467 1423 6 0 0 chr3 115611021 115611177 -43988606 - L1Md_T LINE L1 -81 5802 5647 2 1467 7020 35 0 0 chr3 115611177 115611955 -43987828 + L1Md_T LINE L1 5805 6582 0 2 1467 2903 27 5 62 chr3 115612045 115612434 -43987349 + IAPLTR1_Mm LTR ERVK 1 367 0 2 1467 7412 90 86 68 chr3 115612434 115613717 -43986066 + IAPEz-int LTR ERVK 8 1313 -5168 2 1467 29035 21 8 2 chr3 115613716 115616969 -43982814 + IAPEz-int LTR ERVK 3210 6481 0 2 1467 2903 27 5 62 chr3 115616969 115617358 -43982425 + IAPLTR1_Mm LTR ERVK 1 367 0 2 1467 296 276 146 45 chr3 115617694 115617872 -43981911 - B3A SINE B2 0 198 3 2 1467 36085 39 1 2 chr3 115618828 115624870 -43974913 + L1Md_T LINE L1 1 5589 -297 2 1467 9162 6 0 0 chr3 115624870 115625866 -43973917 + L1Md_T LINE L1 5590 6585 0 2 1467 463 300 20 79 chr3 115626023 115626175 -43973608 - RSINE1 SINE B4 0 165 23 2 1467 1802 147 92 57 chr3 115626273 115626642 -43973141 + ORR1C2 LTR MaLR 3 384 0 2 1467 250 280 109 10 chr3 115628540 115628641 -43971142 + Charlie5 DNA MER1_type 14 124 -2500 2 1467 23 33 0 0 chr3 115628662 115628692 -43971091 + AT_rich Low_complexity Low_complexity 1 30 0 2 1467 259 122 0 0 chr3 115628693 115628734 -43971049 - Lx8 LINE L1 -1 7472 7432 2 1467 480 250 45 45 chr3 115630331 115630486 -43969297 - RSINE1 SINE B4 -10 155 1 2 1467 22 0 0 0 chr3 115630811 115630833 -43968950 + AT_rich Low_complexity Low_complexity 1 22 0 2 1467 709 253 12 12 chr3 115630964 115631136 -43968647 + B3A SINE B2 1 172 -26 2 1467 351 0 0 0 chr3 115631155 115631194 -43968589 + (CA)n Simple_repeat Simple_repeat 2 40 0 2 1467 1474 50 0 11 chr3 115632046 115632227 -43967556 + B2_Mm2 SINE B2 3 181 -14 2 1467 23 0 0 0 chr3 115632227 115632250 -43967533 + AT_rich Low_complexity Low_complexity 1 23 0 2 1467 674 142 19 0 chr3 115632419 115632525 -43967258 + B1_Mur1 SINE Alu 1 108 -41 2 1467 333 0 0 0 chr3 115632532 115632569 -43967214 + (TAA)n Simple_repeat Simple_repeat 2 38 0 2 1467 316 284 189 0 chr3 115634019 115634146 -43965637 - RSINE1 SINE B4 -13 152 2 2 1467 1186 54 0 20 chr3 115634176 115634326 -43965457 + B1_Mus1 SINE Alu 2 148 0 2 1467 213 39 0 0 chr3 115634381 115634407 -43965376 + (CAGAG)n Simple_repeat Simple_repeat 3 28 0 2 1467 229 286 82 0 chr3 115634409 115634507 -43965276 + L1MEf LINE L1 1149 1254 -4946 2 1467 180 0 0 0 chr3 115634605 115634625 -43965158 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 2 1467 228 254 32 0 chr3 115635018 115635081 -43964702 - L1MC1 LINE L1 -343 5990 5926 2 1467 238 273 79 11 chr3 115635087 115635176 -43964607 - L1MD LINE L1 -348 5894 5800 2 1467 240 296 136 0 chr3 115635201 115635326 -43964457 - L1MD LINE L1 -2272 5723 5582 2 1467 1575 264 175 17 chr3 115635335 115636107 -43963676 + Lx8 LINE L1 6577 7470 -3 2 1467 270 321 99 88 chr3 115636191 115636464 -43963319 + MTEa LTR MaLR 63 338 -41 2 1467 388 270 105 58 chr3 115636961 115637256 -43962527 - L1MEf LINE L1 -5024 1176 868 2 1467 398 314 90 34 chr3 115637266 115637444 -43962339 - B3A SINE B2 -9 189 2 2 1467 5123 43 0 3 chr3 115638379 115638989 -43960794 + L1Md_F2 LINE L1 5963 6570 -12 2 1467 21 36 0 0 chr3 115639140 115639168 -43960615 + AT_rich Low_complexity Low_complexity 1 28 0 2 1467 635 204 173 30 chr3 115639386 115639623 -43960160 - B4A SINE B4 -18 274 4 2 1467 662 242 60 6 chr3 115639773 115639939 -43959844 - B3 SINE B2 -1 215 41 2 1467 629 242 68 31 chr3 115640201 115640363 -43959420 + B2_Mm2 SINE B2 1 168 -27 2 1467 395 67 100 0 chr3 115640408 115640468 -43959315 + B1_Mur2 SINE Alu 47 112 -37 2 1467 28 0 0 0 chr3 115641520 115641548 -43958235 + AT_rich Low_complexity Low_complexity 1 28 0 2 1467 337 363 0 0 chr3 115641548 115641639 -43958144 - B1_Mur2 SINE Alu -56 93 3 2 1467 195 299 134 0 chr3 115644465 115644532 -43955251 + MIRc SINE MIR 2 77 -191 2 1467 594 159 20 137 chr3 115648286 115648439 -43951344 - B1_Mur2 SINE Alu -9 140 6 2 1467 414 348 50 25 chr3 115650031 115650270 -43949513 + L2a LINE L2 1686 1930 -1489 2 1467 251 355 28 50 chr3 115650701 115650882 -43948901 + L2a LINE L2 2576 2752 -667 2 1467 276 326 72 53 chr3 115651495 115651647 -43948136 + L2a LINE L2 3267 3421 -5 2 1467 1039 143 126 0 chr3 115653264 115653446 -43946337 + B3 SINE B2 1 205 -11 2 1467 335 232 51 1 chr3 115653622 115653721 -43946062 + B1F SINE Alu 42 146 -1 2 1467 271 195 182 11 chr3 115655378 115655466 -43944317 - RSINE1 SINE B4 -59 106 4 2 1467 723 81 0 0 chr3 115657489 115657588 -43942195 + (TCTA)n Simple_repeat Simple_repeat 3 101 0 2 1467 246 62 0 0 chr3 115657796 115657828 -43941955 + (CA)n Simple_repeat Simple_repeat 2 33 0 2 1467 249 169 35 0 chr3 115657834 115657900 -43941883 - ID4_ SINE ID -13 70 3 2 1467 304 345 57 31 chr3 115658296 115658523 -43941260 + L2b LINE L2 2848 3080 -339 2 1467 776 181 31 71 chr3 115658824 115659020 -43940763 + B3A SINE B2 3 190 -8 2 1467 1246 210 29 110 chr3 115659040 115659269 -43940514 + ORR1C2 LTR MaLR 1 197 -187 2 1467 486 46 0 0 chr3 115659269 115659334 -43940449 + (TC)n Simple_repeat Simple_repeat 2 66 0 2 1467 1246 210 29 110 chr3 115659334 115659521 -43940262 + ORR1C2 LTR MaLR 198 383 -1 2 1467 238 292 19 68 chr3 115660985 115661088 -43938695 + L2b LINE L2 3277 3374 -1 2 1467 673 297 156 30 chr3 115661593 115662030 -43937753 + MLT1F2 LTR MaLR 3 494 -66 2 1467 542 188 12 12 chr3 115662646 115662808 -43936975 + (TA)n Simple_repeat Simple_repeat 1 162 0 2 1467 2037 26 0 0 chr3 115662899 115663120 -43936663 + L1_Mm LINE L1 5366 5586 -297 2 1467 8878 19 0 0 chr3 115663120 115664116 -43935667 + L1Md_A LINE L1 5587 6582 0 2 1467 180 0 0 0 chr3 115664884 115664904 -43934879 + (A)n Simple_repeat Simple_repeat 1 20 0 2 1467 697 284 0 44 chr3 115665500 115665706 -43934077 + B3A SINE B2 2 198 0 2 1467 821 210 38 38 chr3 115665721 115665934 -43933849 + B3 SINE B2 1 213 -3 2 1467 329 319 0 34 chr3 115666048 115666165 -43933618 + ID_B1 SINE B4 64 176 -48 2 1467 541 198 20 0 chr3 115666074 115666175 -43933608 + PB1D9 SINE Alu 6 108 -12 2 1467 423 119 0 0 chr3 115666175 115666242 -43933541 + (TAGA)n Simple_repeat Simple_repeat 2 68 0 2 1467 258 260 0 0 chr3 115666251 115666324 -43933459 + GA-rich Low_complexity Low_complexity 5 77 0 2 1467 294 181 375 0 chr3 115666324 115666417 -43933366 - B3A SINE B2 -86 130 3 2 1467 252 265 0 12 chr3 115666835 115666919 -43932864 - MIRc SINE MIR -7 261 179 2 1467 209 337 59 30 chr3 115666940 115667041 -43932742 - MIR3 SINE MIR -6 202 99 2 1467 381 342 50 32 chr3 115667290 115667568 -43932215 + B4 SINE B4 2 284 -8 2 1467 334 282 16 79 chr3 115667884 115668011 -43931772 - ID_B1 SINE B4 -1 223 105 2 1467 843 217 120 0 chr3 115668074 115668258 -43931525 - B3 SINE B2 -10 206 1 2 1467 225 287 102 39 chr3 115668701 115668828 -43930955 - MIRb SINE MIR -68 194 60 2 1467 426 287 78 26 chr3 115669169 115669323 -43930460 + RSINE1 SINE B4 2 163 -2 2 1467 646 288 72 18 chr3 115670016 115670089 -43929694 + B4 SINE B4 4 85 -207 2 1467 292 333 16 71 chr3 115670089 115670215 -43929568 + B1_Mur3 SINE Alu 1 119 -30 2 1467 405 233 0 0 chr3 115670375 115670448 -43929335 - ID4_ SINE ID 0 83 11 2 1467 765 194 9 78 chr3 115670598 115670766 -43929017 - RSINE1 SINE B4 -1 164 1 2 1467 615 60 0 0 chr3 115671174 115671258 -43928525 + (GGAA)n Simple_repeat Simple_repeat 1 84 0 2 1467 295 336 11 42 chr3 115671260 115671454 -43928329 - L1M2 LINE L1 -2202 3941 3756 2 1467 183 250 83 0 chr3 115671516 115671564 -43928219 - MIR SINE MIR -64 144 93 2 1467 466 277 202 16 chr3 115671899 115672141 -43927642 + MLT1E LTR MaLR 60 346 -308 2 1467 727 239 13 6 chr3 115672162 115672318 -43927465 + MLT1E LTR MaLR 429 585 -68 2 1467 905 94 60 7 chr3 115672552 115672702 -43927081 - B2_Mm2 SINE B2 0 195 38 2 1467 277 209 41 113 chr3 115672798 115672895 -43926888 + Charlie2b DNA MER1_type 511 600 -2182 2 1467 277 295 116 84 chr3 115673758 115674102 -43925681 - ORR1E LTR MaLR 0 359 5 2 1467 618 82 0 0 chr3 115674717 115674802 -43924981 + (TG)n Simple_repeat Simple_repeat 2 86 0 2 1467 304 333 55 7 chr3 115675033 115675178 -43924605 - MER105 DNA DNA -3 201 50 2 1467 337 294 22 0 chr3 115676401 115676493 -43923290 - PB1D10 SINE Alu -21 96 3 2 1467 263 185 0 36 chr3 115676955 115677011 -43922772 - B3 SINE B2 0 216 163 2 1467 348 127 0 0 chr3 115677014 115677069 -43922714 + (TG)n Simple_repeat Simple_repeat 1 55 0 2 1467 579 313 60 14 chr3 115677125 115677342 -43922441 + L2 LINE L2 1151 1377 -2042 2 1467 195 100 0 0 chr3 115678456 115678486 -43921297 + (TTTC)n Simple_repeat Simple_repeat 2 31 0 2 1467 797 229 28 0 chr3 115678498 115678642 -43921141 - B1_Mur1 SINE Alu -1 148 1 2 1467 1181 95 0 0 chr3 115678670 115678817 -43920966 + B1_Mus1 SINE Alu 2 148 0 2 1467 245 39 58 19 chr3 115678825 115678877 -43920906 + (CAA)n Simple_repeat Simple_repeat 1 54 0 2 1467 633 239 106 91 chr3 115678888 115679086 -43920697 + B3 SINE B2 1 201 -15 2 1467 243 233 55 0 chr3 115679155 115679228 -43920555 + ID4 SINE ID 7 83 0 2 1467 241 326 154 7 chr3 115679246 115679382 -43920401 + L2 LINE L2 2844 2999 -420 2 1467 460 294 154 0 chr3 115682835 115682978 -43916805 - RSINE1 SINE B4 0 165 1 3 1467 192 77 0 0 chr3 115683094 115683120 -43916663 + (TA)n Simple_repeat Simple_repeat 2 27 0 3 1467 23 54 0 0 chr3 115684858 115684895 -43914888 + AT_rich Low_complexity Low_complexity 1 37 0 3 1467 339 267 118 37 chr3 115685227 115685453 -43914330 + MTD-int LTR MaLR 772 915 -343 3 1467 320 226 57 16 chr3 115685519 115685622 -43914161 + B1F1 SINE Alu 32 148 -1 3 1467 30 0 0 0 chr3 115685633 115685663 -43914120 + AT_rich Low_complexity Low_complexity 1 30 0 3 1467 382 269 76 0 chr3 115685880 115686025 -43913758 + L1MA7 LINE L1 5138 5293 -847 3 1467 543 16 0 0 chr3 115686143 115686207 -43913576 + (TA)n Simple_repeat Simple_repeat 1 64 0 3 1467 629 283 123 23 chr3 115686207 115686784 -43912999 + L1MA7 LINE L1 5496 6166 -2 3 1467 1201 54 13 20 chr3 115686870 115686884 -43912899 - B1_Mur4 SINE Alu 0 150 139 3 1467 294 50 0 0 chr3 115686884 115686924 -43912859 + (TTTTG)n Simple_repeat Simple_repeat 1 40 0 3 1467 1201 54 13 20 chr3 115686924 115687060 -43912723 - B1_Mur4 SINE Alu -12 138 1 3 1467 332 341 107 18 chr3 115688560 115688832 -43910951 + L1M4 LINE L1 937 1232 -5672 3 1467 260 336 36 0 chr3 115689073 115689183 -43910600 + L1M4 LINE L1 1479 1592 -5312 3 1467 250 247 104 0 chr3 115689253 115689330 -43910453 + PB1D10 SINE Alu 33 117 0 3 1467 391 248 2 0 chr3 115689892 115689991 -43909792 - PB1D10 SINE Alu -47 101 3 3 1467 267 31 0 0 chr3 115690062 115690094 -43909689 + (GGA)n Simple_repeat Simple_repeat 3 34 0 3 1467 24 0 0 0 chr3 115690222 115690246 -43909537 + AT_rich Low_complexity Low_complexity 1 24 0 3 1467 240 247 224 7 chr3 115690297 115690473 -43909310 + L1M4 LINE L1 2232 2468 -4866 3 1467 734 74 86 36 chr3 115690860 115691000 -43908783 + RMER17B LTR ERVK 317 463 -495 3 1467 961 159 0 9 chr3 115691063 115691286 -43908497 + GA-rich Low_complexity Low_complexity 1 220 0 3 1467 392 281 192 72 chr3 115691299 115691633 -43908150 - MTE2a LTR MaLR -5 374 1 3 1467 565 261 8 23 chr3 115692150 115692283 -43907500 - B1F2 SINE Alu 0 149 19 3 1467 387 297 20 80 chr3 115692163 115692313 -43907470 - ID_B1 SINE B4 -10 214 74 3 1467 380 91 15 0 chr3 115692695 115692761 -43907022 + (GA)n Simple_repeat Simple_repeat 2 68 0 3 1467 225 108 0 0 chr3 115692848 115692885 -43906898 + (CA)n Simple_repeat Simple_repeat 1 37 0 3 1467 282 286 95 0 chr3 115694523 115694607 -43905176 + B1F1 SINE Alu 7 98 -51 3 1467 29 0 0 0 chr3 115694614 115694643 -43905140 + AT_rich Low_complexity Low_complexity 1 29 0 3 1467 189 107 0 0 chr3 115694968 115694996 -43904787 + (CAGA)n Simple_repeat Simple_repeat 3 30 0 3 1467 240 155 35 0 chr3 115695579 115695637 -43904146 - Lx9 LINE L1 -1 7643 7584 3 1467 1208 177 39 0 chr3 115696247 115696450 -43903333 - B3 SINE B2 -5 211 1 3 1467 809 132 126 46 chr3 115696565 115696740 -43903043 - B2_Mm2 SINE B2 -6 189 1 3 1467 286 243 76 62 chr3 115697335 115697408 -43902375 + L1MCc LINE L1 1380 1455 -4968 3 1467 668 219 181 0 chr3 115697408 115697568 -43902215 + B3A SINE B2 3 191 -7 3 1467 286 243 76 62 chr3 115697568 115697639 -43902144 + L1MCc LINE L1 1456 1526 -4897 3 1467 278 264 11 11 chr3 115697946 115698034 -43901749 + L1MCc LINE L1 3970 4057 -2884 3 1467 227 224 168 30 chr3 115698042 115698131 -43901652 + PB1D10 SINE Alu 3 108 -9 3 1467 2503 62 20 0 chr3 115698131 115698436 -43901347 + L1_Mus2 LINE L1 6256 6566 0 3 1467 227 224 168 30 chr3 115698436 115698447 -43901336 + PB1D10 SINE Alu 109 117 0 3 1467 1148 75 7 7 chr3 115698524 115698672 -43901111 + B1_Mus1 SINE Alu 1 148 0 3 1467 1759 273 109 48 chr3 115698678 115699837 -43899946 + L1MCc LINE L1 4091 5320 -1621 3 1467 235 328 16 0 chr3 115699859 115699923 -43899860 - tRNA-Ala-GCY_ tRNA tRNA -8 67 3 3 1467 323 284 34 0 chr3 115699974 115700062 -43899721 - U6 snRNA snRNA -16 91 1 3 1467 963 176 103 5 chr3 115700160 115700354 -43899429 + B3 SINE B2 1 213 -3 3 1467 1265 178 158 56 chr3 115700372 115700694 -43899089 - Lx5 LINE L1 -3 7047 6693 3 1467 427 223 50 54 chr3 115700747 115700910 -43898873 + L1MCc LINE L1 5418 5592 -1343 3 1467 1776 216 80 149 chr3 115700934 115701454 -43898329 + RMER19C LTR ERVK 39 505 -106 3 1467 3210 20 6 0 chr3 115701454 115701798 -43897985 + ORR1A0 LTR MaLR 1 346 0 3 1467 1776 216 80 149 chr3 115701798 115701893 -43897890 + RMER19C LTR ERVK 506 611 0 3 1467 295 300 78 20 chr3 115702033 115702186 -43897597 - RMER15-int LTR ERVL -3646 1353 1192 3 1467 828 303 32 32 chr3 115702162 115702500 -43897283 - RMER15-int LTR ERVL -4243 756 419 3 1467 397 275 64 142 chr3 115702651 115702884 -43896899 - RMER15 LTR ERVL -14 561 347 3 1467 336 241 53 9 chr3 115702929 115703042 -43896741 + MLT1C LTR MaLR 191 308 -159 3 1467 387 0 0 0 chr3 115703256 115703299 -43896484 + (CA)n Simple_repeat Simple_repeat 2 44 0 3 1467 634 277 6 30 chr3 115703651 115703815 -43895968 + RSINE1 SINE B4 3 162 -3 3 1467 22 56 0 0 chr3 115703816 115703852 -43895931 + AT_rich Low_complexity Low_complexity 1 36 0 3 1467 287 262 50 0 chr3 115704158 115704253 -43895530 + B1F SINE Alu 46 149 0 3 1467 283 323 24 83 chr3 115704839 115705008 -43894775 + B4A SINE B4 132 290 -2 3 1467 1381 214 71 77 chr3 115706115 115706494 -43893289 + Lx6 LINE L1 7084 7460 0 3 1467 251 224 4 0 chr3 115706671 115706743 -43893040 - L2c LINE L2 0 3387 3303 3 1467 516 281 138 38 chr3 115707243 115707317 -43892466 - ID_B1 SINE B4 -46 178 105 3 1467 324 0 0 0 chr3 115707317 115707353 -43892430 + (TG)n Simple_repeat Simple_repeat 2 37 0 3 1467 516 281 138 38 chr3 115707353 115707437 -43892346 - ID_B1 SINE B4 -120 104 5 3 1467 26 88 0 0 chr3 115708014 115708082 -43891701 + AT_rich Low_complexity Low_complexity 1 68 0 3 1467 765 98 74 0 chr3 115708337 115708459 -43891324 - B1_Mur4 SINE Alu -6 144 14 3 1467 720 251 31 12 chr3 115708710 115708913 -43890870 - B3A SINE B2 0 216 19 3 1467 252 0 0 0 chr3 115709368 115709396 -43890387 + (A)n Simple_repeat Simple_repeat 1 28 0 3 1467 424 251 262 80 chr3 115713662 115714058 -43885725 - L1MB3 LINE L1 -14 6157 5690 3 1467 607 226 14 42 chr3 115714122 115714265 -43885518 - B1_Mur1 SINE Alu -10 139 1 3 1467 414 268 7 16 chr3 115714316 115714423 -43885360 + PB1D10 SINE Alu 25 147 -1 3 1467 732 188 11 11 chr3 115714534 115714712 -43885071 + CT-rich Low_complexity Low_complexity 3 180 0 3 1467 297 167 0 0 chr3 115714758 115714806 -43884977 + U2 snRNA snRNA 9 56 -132 3 1467 191 260 20 0 chr3 115715185 115715235 -43884548 + MIRm SINE MIR 224 274 -2 3 1467 474 118 0 0 chr3 115716410 115716486 -43883297 + Lx2 LINE L1 6916 6991 -6 3 1467 204 40 0 0 chr3 115716711 115716736 -43883047 + (TG)n Simple_repeat Simple_repeat 2 26 0 3 1467 801 232 113 5 chr3 115716944 115717139 -43882644 + B3 SINE B2 1 216 0 3 1467 777 306 44 53 chr3 115717320 115717641 -43882142 - ORR1E LTR MaLR -41 318 1 3 1467 682 217 66 36 chr3 115718305 115718472 -43881311 - B2_Mm2 SINE B2 -22 173 2 3 1467 404 250 157 15 chr3 115718616 115718750 -43881033 + RSINE1 SINE B4 3 155 -10 3 1467 300 53 0 0 chr3 115719389 115719427 -43880356 + (TTG)n Simple_repeat Simple_repeat 2 39 0 3 1467 714 302 13 8 chr3 115719700 115719934 -43879849 + L1MB8 LINE L1 5584 5818 -360 3 1467 776 259 59 99 chr3 115719949 115720253 -43879530 + B4A SINE B4 1 292 0 3 1467 564 264 48 70 chr3 115720293 115720521 -43879262 + L1MB8 LINE L1 5840 6062 -116 3 1467 337 314 0 37 chr3 115720530 115720639 -43879144 + PB1D10 SINE Alu 13 117 0 3 1467 601 298 18 14 chr3 115721011 115721229 -43878554 - MER20 DNA MER1_type 0 219 1 3 1467 660 210 36 14 chr3 115721458 115721598 -43878185 + B1_Mus1 SINE Alu 1 143 -5 3 1467 1157 234 82 77 chr3 115721636 115722255 -43877528 - RMER20B LTR ERVK -21 606 9 3 1467 566 227 0 18 chr3 115723382 115723494 -43876289 + PB1D10 SINE Alu 2 111 -6 3 1467 2589 142 47 14 chr3 115723649 115724093 -43875690 + Lx4B LINE L1 6594 7052 -6 3 1467 327 296 113 0 chr3 115724553 115724668 -43875115 + B1F2 SINE Alu 17 144 -5 3 1467 350 233 32 32 chr3 115724576 115724669 -43875114 + ID_B1 SINE B4 128 220 -4 3 1467 210 37 0 0 chr3 115724707 115724734 -43875049 + (TGGG)n Simple_repeat Simple_repeat 3 29 0 3 1467 522 218 8 68 chr3 115725097 115725215 -43874568 - PB1D10 SINE Alu -1 116 6 3 1467 404 252 10 20 chr3 115725131 115725232 -43874551 - ID_B1 SINE B4 -53 171 72 3 1467 1420 192 50 137 chr3 115725268 115725685 -43874098 - ORR1C2 LTR MaLR -1 383 3 3 1467 191 167 24 0 chr3 115725888 115725930 -43873853 + GA-rich Low_complexity Low_complexity 3 45 0 3 1467 682 228 83 44 chr3 115725939 115726168 -43873615 + Lx8 LINE L1 7094 7331 -142 3 1467 364 298 67 46 chr3 115726202 115726639 -43873144 - RLTR12B LTR ERVK -46 313 1 3 1467 316 182 104 43 chr3 115726639 115726754 -43873029 + Lx8 LINE L1 7323 7444 -29 3 1467 225 308 11 32 chr3 115726701 115726795 -43872988 + RMER1C Other Other 1250 1341 -1 3 1467 468 0 0 0 chr3 115727494 115727546 -43872237 + (TG)n Simple_repeat Simple_repeat 2 53 0 3 1467 1817 128 186 11 chr3 115727551 115727900 -43871883 - MTC LTR MaLR -11 410 1 3 1467 207 0 0 0 chr3 115728323 115728346 -43871437 + (T)n Simple_repeat Simple_repeat 1 23 0 3 1467 1628 47 0 0 chr3 115729210 115729401 -43870382 - L1_Mus1 LINE L1 0 6567 6377 3 1467 222 62 0 0 chr3 115729453 115729485 -43870298 + (A)n Simple_repeat Simple_repeat 1 32 0 3 1467 210 136 0 64 chr3 115729716 115729763 -43870020 + (CACCC)n Simple_repeat Simple_repeat 5 48 0 3 1467 198 0 0 0 chr3 115731049 115731071 -43868712 + (GTTTG)n Simple_repeat Simple_repeat 2 23 0 3 1467 457 246 51 34 chr3 115732658 115732776 -43867007 - PB1D7 SINE Alu 0 120 1 3 1467 398 190 76 0 chr3 115732851 115732930 -43866853 + PB1D7 SINE Alu 17 101 -19 3 1467 360 0 0 0 chr3 115732930 115732970 -43866813 + (TC)n Simple_repeat Simple_repeat 2 41 0 3 1467 513 0 0 0 chr3 115732970 115733026 -43866757 + (TG)n Simple_repeat Simple_repeat 2 58 0 3 1467 507 279 8 0 chr3 115733027 115733149 -43866634 - RSINE1 SINE B4 -42 123 1 3 1467 276 309 42 52 chr3 115733322 115733534 -43866249 - L1M5 LINE L1 -410 5714 5505 3 1467 231 114 0 0 chr3 115734214 115734249 -43865534 + (TTTG)n Simple_repeat Simple_repeat 4 38 0 3 1467 292 345 78 0 chr3 115734249 115734365 -43865418 - B1F SINE Alu -21 128 4 3 1467 489 17 0 0 chr3 115734554 115734612 -43865171 + (TG)n Simple_repeat Simple_repeat 2 59 0 4 1467 301 260 103 28 chr3 115734617 115734724 -43865059 + MER20 DNA MER1_type 38 152 -67 4 1467 333 0 0 0 chr3 115735208 115735245 -43864538 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 4 1467 656 288 67 19 chr3 115735477 115735686 -43864097 + ID_B1 SINE B4 2 220 -4 4 183 1393 168 18 5 chr3 115736407 115736629 -43863154 + URR1B DNA MER1_type 1 225 0 4 1468 498 331 7 0 chr3 115736928 115737070 -43862713 + RSINE1 SINE B4 3 145 -20 4 1468 180 0 0 0 chr3 115737088 115737108 -43862675 + (TTAA)n Simple_repeat Simple_repeat 2 21 0 4 1468 261 136 30 15 chr3 115737343 115737410 -43862373 + (TAA)n Simple_repeat Simple_repeat 3 70 0 4 1468 21 89 0 0 chr3 115737480 115737536 -43862247 + AT_rich Low_complexity Low_complexity 1 56 0 4 1468 9189 3 0 0 chr3 115737546 115739020 -43860763 - L1Md_A LINE L1 0 6582 5109 4 1468 642 270 192 53 chr3 115739058 115739324 -43860459 - Lx8 LINE L1 -11 7462 7160 4 1468 435 284 81 15 chr3 115739776 115739912 -43859871 + B1F1 SINE Alu 3 147 -2 4 1468 294 321 67 0 chr3 115740023 115740157 -43859626 + L1ME1 LINE L1 5596 5738 -2047 4 1468 430 279 75 51 chr3 115740925 115741222 -43858561 + L1MA5 LINE L1 1446 1735 -5114 4 1468 340 159 0 0 chr3 115741222 115741285 -43858498 + Lx9 LINE L1 7582 7644 0 4 1468 362 252 52 39 chr3 115741285 115741310 -43858473 + L1MA5 LINE L1 1731 1758 -5091 4 1468 298 279 0 0 chr3 115741369 115741430 -43858353 + ID4_ SINE ID 21 81 -2 4 1468 401 250 124 9 chr3 115741383 115741496 -43858287 + ID_B1 SINE B4 36 161 -63 4 1468 226 260 125 8 chr3 115741500 115741628 -43858155 + L1MA5 LINE L1 3731 3873 -2972 4 1468 401 284 97 35 chr3 115741661 115741774 -43858009 + B1F2 SINE Alu 1 149 0 4 1468 21 57 0 0 chr3 115741817 115741852 -43857931 + AT_rich Low_complexity Low_complexity 1 35 0 4 1468 2248 281 68 40 chr3 115741976 115742116 -43857667 + L1MA5 LINE L1 6027 6184 -818 4 1468 324 0 0 0 chr3 115742116 115742152 -43857631 + (CA)n Simple_repeat Simple_repeat 2 37 0 4 1468 2248 281 68 40 chr3 115742152 115742349 -43857434 + L1MA5 LINE L1 6185 6383 -619 4 1468 2311 147 52 75 chr3 115742349 115742826 -43856957 - RMER4A LTR ERVK 0 466 1 4 1468 2248 281 68 40 chr3 115742826 115743434 -43856349 + L1MA5 LINE L1 6384 6999 -3 4 1468 793 310 53 24 chr3 115743507 115743854 -43855929 + L1ME1 LINE L1 5802 6159 -20 4 1468 586 317 14 0 chr3 115744838 115744983 -43854800 - RSINE1 SINE B4 -17 148 2 4 1468 535 352 44 0 chr3 115745447 115745674 -43854109 - MIRb SINE MIR -8 260 24 4 1468 254 250 36 48 chr3 115745913 115745997 -43853786 + MER20 DNA MER1_type 24 106 -113 4 1468 182 350 16 71 chr3 115746008 115746134 -43853649 - L2 LINE L2 -710 2709 2591 4 1468 310 312 154 59 chr3 115746143 115746279 -43853504 - B1_Mur1 SINE Alu 0 149 1 4 1468 228 224 0 0 chr3 115747154 115747212 -43852571 + (CAAA)n Simple_repeat Simple_repeat 2 59 0 4 1468 423 119 0 0 chr3 115747444 115747511 -43852272 + (TA)n Simple_repeat Simple_repeat 2 68 0 4 1468 404 305 211 10 chr3 115748019 115748218 -43851565 - L3 LINE CR1 -32 4457 4219 4 1468 1199 186 27 5 chr3 115748958 115749179 -43850604 + URR1A DNA MER1_type 1 226 0 4 1468 646 263 158 8 chr3 115750498 115750686 -43849097 + ID_B1 SINE B4 9 224 0 4 1468 1035 221 14 18 chr3 115750753 115750974 -43848809 - Lx5 LINE L1 -367 6683 6464 4 1468 4703 158 32 82 chr3 115750975 115751911 -43847872 + RMER19B LTR ERVK 1 889 -13 4 1468 1752 229 20 28 chr3 115751921 115752320 -43847463 - Lx5 LINE L1 -579 6471 6076 4 1468 1502 264 13 16 chr3 115752327 115752683 -43847100 + Lx5 LINE L1 6669 7029 -21 4 1468 216 0 0 0 chr3 115752683 115752707 -43847076 + (TTAA)n Simple_repeat Simple_repeat 1 24 0 4 1468 1502 264 13 16 chr3 115752707 115752723 -43847060 + Lx5 LINE L1 7030 7040 -10 4 1468 360 64 0 0 chr3 115752738 115752785 -43846998 + (TTTC)n Simple_repeat Simple_repeat 2 48 0 4 1468 1182 80 0 39 chr3 115752785 115752941 -43846842 - B1_Mur4 SINE Alu 0 150 1 4 1468 556 293 44 65 chr3 115753740 115753988 -43845795 + MTD LTR MaLR 4 246 -173 4 1468 240 296 59 29 chr3 115754554 115754690 -43845093 + L1MEc LINE L1 1029 1168 -5232 4 1468 338 302 10 77 chr3 115754690 115754794 -43844989 + RSINE1 SINE B4 56 152 -13 4 1468 21 57 0 0 chr3 115754817 115754852 -43844931 + AT_rich Low_complexity Low_complexity 1 35 0 4 1468 288 299 34 11 chr3 115755154 115755242 -43844541 - MTEb LTR MaLR -23 356 267 4 1468 1050 234 109 24 chr3 115755402 115755707 -43844076 + MTD LTR MaLR 9 341 -78 4 1468 1245 92 11 49 chr3 115755727 115755910 -43843873 + B2_Mm2 SINE B2 1 176 -19 4 1468 3940 93 9 2 chr3 115756752 115757291 -43842492 + L1_Mus3 LINE L1 6019 6561 -77 4 1468 802 124 0 24 chr3 115757291 115757415 -43842368 - B2_Mm2 SINE B2 -73 122 2 4 1468 1034 266 77 30 chr3 115757673 115758010 -43841773 + MLT1A0 LTR MaLR 13 365 0 4 1468 265 235 118 0 chr3 115758079 115758147 -43841636 + ID4 SINE ID 2 77 -6 4 1468 829 191 0 0 chr3 115758910 115759046 -43840737 - B1_Mur1 SINE Alu -7 142 7 4 1468 354 344 132 53 chr3 115759176 115759403 -43840380 + LTR88b LTR Gypsy? 4 248 -589 4 1468 386 299 126 43 chr3 115760127 115760463 -43839320 + ORR1E LTR MaLR 1 379 0 4 1468 296 333 73 40 chr3 115760517 115760667 -43839116 - MIRb SINE MIR -67 201 47 4 1468 224 278 69 0 chr3 115760791 115760863 -43838920 - MIRc SINE MIR -135 133 57 4 1468 516 59 0 0 chr3 115761660 115761728 -43838055 + (TTTTC)n Simple_repeat Simple_repeat 2 69 0 4 1468 198 0 0 0 chr3 115761728 115761749 -43838034 + (TTG)n Simple_repeat Simple_repeat 3 24 0 4 1468 1216 58 0 0 chr3 115761750 115761889 -43837894 - B1_Mus1 SINE Alu -9 139 1 4 1468 207 0 0 0 chr3 115761989 115762012 -43837771 + (GA)n Simple_repeat Simple_repeat 2 24 0 4 1468 668 320 34 15 chr3 115762012 115762218 -43837565 + B4 SINE B4 81 290 -2 4 1468 885 159 18 0 chr3 115762223 115762448 -43837335 + GA-rich Low_complexity Low_complexity 1 229 0 4 1468 1403 39 0 16 chr3 115762448 115762631 -43837152 + (GGGAGA)n Simple_repeat Simple_repeat 1 180 0 4 1468 1220 65 0 0 chr3 115762780 115762919 -43836864 - B1_Mus1 SINE Alu -5 143 5 4 1468 4227 73 43 4 chr3 115763934 115764468 -43835315 - L1_Mus2 LINE L1 -1 6565 6011 4 1468 2150 271 74 66 chr3 115764532 115765917 -43833866 - Lx6 LINE L1 -19 7031 5670 4 1468 3303 59 10 2 chr3 115765917 115766310 -43833473 + MTA_Mm LTR MaLR 1 396 0 4 1468 2150 197 177 36 chr3 115766310 115766441 -43833342 - Lx6 LINE L1 -210 5670 5497 4 1468 246 299 33 33 chr3 115766438 115766590 -43833193 + L1MD LINE L1 3492 3643 -2503 4 1468 335 319 223 30 chr3 115766635 115767029 -43832754 + L1MD LINE L1 3789 4258 -1888 4 1468 270 241 93 9 chr3 115767067 115767185 -43832598 + L1M4 LINE L1 4233 4359 -1787 4 1468 1291 61 0 0 chr3 115767186 115767333 -43832450 + B1_Mus2 SINE Alu 1 147 0 4 1468 297 0 0 0 chr3 115767333 115767366 -43832417 + (A)n Simple_repeat Simple_repeat 1 33 0 4 1468 213 0 81 0 chr3 115768254 115768291 -43831492 + (CAA)n Simple_repeat Simple_repeat 2 41 0 4 1468 757 248 60 29 chr3 115768331 115768631 -43831152 - RMER1A Other Other -674 356 26 4 1468 188 67 33 0 chr3 115768859 115768889 -43830894 + (TA)n Simple_repeat Simple_repeat 1 31 0 4 1468 3499 48 2 0 chr3 115768997 115769392 -43830391 + MTA_Mm LTR MaLR 1 396 0 4 1468 263 317 83 0 chr3 115770126 115770246 -43829537 + ERVL-E-int LTR ERVL 4000 4129 -1538 4 1468 1439 41 6 0 chr3 115770341 115770512 -43829271 + L1Md_T LINE L1 6411 6582 0 4 1468 369 0 0 0 chr3 115770615 115770656 -43829127 + (TTTTA)n Simple_repeat Simple_repeat 5 45 0 4 1468 184 333 53 11 chr3 115771378 115771472 -43828311 + L2 LINE L2 2759 2856 -563 4 1468 24 32 0 0 chr3 115771563 115771594 -43828189 + AT_rich Low_complexity Low_complexity 1 31 0 4 1468 2055 310 101 75 chr3 115772645 115773917 -43825866 + Lx8 LINE L1 6140 7444 -29 4 1468 327 348 0 82 chr3 115775273 115775330 -43824453 - ID_B1 SINE B4 -20 204 148 4 1468 645 14 0 0 chr3 115775330 115775404 -43824379 + (TC)n Simple_repeat Simple_repeat 2 75 0 4 1468 608 242 48 0 chr3 115775407 115775531 -43824252 - B1_Mur3 SINE Alu -17 132 3 4 1468 327 348 0 82 chr3 115775531 115775591 -43824192 - ID_B1 SINE B4 -77 147 93 4 1468 584 209 14 110 chr3 115775946 115776091 -43823692 + B1_Mur2 SINE Alu 6 136 -13 4 1468 777 233 82 18 chr3 115776162 115776381 -43823402 + MERVL_2A-int LTR ERVL 1649 1881 -3833 4 1468 768 316 13 13 chr3 115776383 115776620 -43823163 + MERVL_2A-int LTR ERVL 2029 2265 -3496 4 1468 636 199 70 13 chr3 115777945 115778103 -43821680 + MERVL_2A-int LTR ERVL 2576 2742 -3015 4 1468 2152 270 109 37 chr3 115778121 115778221 -43821562 + MERVL_2A-int LTR ERVL 2867 3007 -2754 4 1468 1181 163 42 0 chr3 115778221 115778436 -43821347 + URR1B DNA MER1_type 2 225 0 4 1468 2152 270 109 37 chr3 115778436 115779085 -43820698 + MERVL_2A-int LTR ERVL 3008 3670 -2091 4 1468 1267 171 53 14 chr3 115779085 115779348 -43820435 + RMER17B LTR ERVK 1 301 -605 4 1468 271 275 89 55 chr3 115779544 115779690 -43820093 - RLTR16 LTR ERVK -324 181 31 4 1468 801 250 58 33 chr3 115779699 115779939 -43819844 + MERVL_2A-int LTR ERVL 4003 4248 -1513 4 1468 909 238 14 10 chr3 115781111 115781319 -43818464 - B3 SINE B2 -3 213 5 4 1468 241 306 52 0 chr3 115781340 115781474 -43818309 - L1MA10 LINE L1 -28 6306 6166 4 1468 234 319 85 78 chr3 115781614 115781743 -43818040 + L2c LINE L2 3253 3382 -5 4 1468 192 158 0 0 chr3 115782244 115782282 -43817501 + (CA)n Simple_repeat Simple_repeat 2 39 0 4 1468 5083 44 5 5 chr3 115782393 115783032 -43816751 + L1Md_F2 LINE L1 5944 6582 0 4 1468 180 0 0 0 chr3 115783049 115783069 -43816714 + (TAAAA)n Simple_repeat Simple_repeat 2 21 0 4 1468 458 200 12 0 chr3 115783724 115783809 -43815974 - B1_Mur2 SINE Alu 0 149 64 4 1468 1038 163 49 40 chr3 115784895 115785119 -43814664 + URR1A DNA MER1_type 1 226 0 4 1468 619 158 14 0 chr3 115785650 115785796 -43813987 + (CA)n Simple_repeat Simple_repeat 1 148 0 4 1468 3119 101 51 29 chr3 115786616 115787106 -43812677 - Lx LINE L1 -6 6648 6148 4 1468 692 304 89 24 chr3 115787188 115787434 -43812349 - B4 SINE B4 -13 279 18 4 1468 223 328 0 30 chr3 115787377 115787443 -43812340 - ID4_ SINE ID -11 72 9 4 1468 238 143 0 20 chr3 115787782 115787832 -43811951 + L1ME4a LINE L1 6072 6120 -4 4 1468 21 57 0 0 chr3 115788246 115788281 -43811502 + AT_rich Low_complexity Low_complexity 1 35 0 4 1468 273 390 96 45 chr3 115788970 115789410 -43810373 - L2a LINE L2 -42 3384 2923 5 1468 276 367 0 0 chr3 115789449 115789626 -43810157 + G-rich Low_complexity Low_complexity 1 177 0 5 1468 884 273 35 80 chr3 115790013 115790324 -43809459 - ORR1E LTR MaLR 0 359 63 5 1468 299 179 38 13 chr3 115790324 115790403 -43809380 + L1MB5 LINE L1 5192 5272 -874 5 1468 1121 297 5 108 chr3 115790521 115790958 -43808825 - RMER19C LTR ERVK 0 611 220 5 1468 1279 182 13 95 chr3 115791004 115791308 -43808475 - RMER19C LTR ERVK -332 279 1 5 1468 375 342 43 43 chr3 115791314 115791592 -43808191 + L1MB5 LINE L1 5366 5643 -535 5 1468 1141 257 75 22 chr3 115791598 115791920 -43807863 + MTEa LTR MaLR 5 343 -36 5 1468 265 229 42 70 chr3 115791956 115792095 -43807688 + L1MB5 LINE L1 5657 5795 -379 5 1468 559 311 7 7 chr3 115792104 115792240 -43807543 - B1_Mur1 SINE Alu -13 136 1 5 1468 229 323 95 47 chr3 115792256 115792594 -43807189 + L1MB5 LINE L1 5812 6165 -9 5 1468 276 294 104 7 chr3 115792711 115792855 -43806928 + L1MEf LINE L1 1595 1752 -4490 5 1468 598 266 28 17 chr3 115793313 115793493 -43806290 + B3A SINE B2 1 182 -16 5 1468 509 249 35 7 chr3 115793534 115793693 -43806090 + L1MEf LINE L1 2346 2508 -3632 5 1468 507 318 77 74 chr3 115793767 115794194 -43805589 + L1M5 LINE L1 4520 4942 -1204 5 1468 1174 56 7 0 chr3 115794194 115794338 -43805445 + B1_Mus2 SINE Alu 3 147 0 5 1468 507 318 77 74 chr3 115794338 115794664 -43805119 + L1M5 LINE L1 4943 5275 -871 5 1468 723 228 25 0 chr3 115794677 115794839 -43804944 + B3 SINE B2 1 166 -50 5 1468 351 0 0 0 chr3 115795754 115795793 -43803990 + (TG)n Simple_repeat Simple_repeat 1 39 0 5 1468 351 0 0 0 chr3 115795793 115795831 -43803952 + (GA)n Simple_repeat Simple_repeat 1 39 0 5 1468 427 248 76 23 chr3 115796987 115797119 -43802664 - B1F SINE Alu -10 139 1 5 1468 743 328 25 51 chr3 115797279 115797594 -43802189 + MTE2a LTR MaLR 56 362 -17 5 1468 21 0 0 0 chr3 115797820 115797841 -43801942 + AT_rich Low_complexity Low_complexity 1 21 0 5 1468 327 146 0 0 chr3 115797894 115797949 -43801834 + (TTA)n Simple_repeat Simple_repeat 3 57 0 5 1468 342 300 0 73 chr3 115799491 115799642 -43800141 + RSINE1 SINE B4 26 165 0 5 1468 302 315 34 0 chr3 115800007 115800096 -43799687 + L1M LINE L1 5334 5425 -754 5 1468 1417 222 70 72 chr3 115800133 115800846 -43798937 - Lx6 LINE L1 -26 7434 6480 5 1468 180 111 0 0 chr3 115801169 115801196 -43798587 + (A)n Simple_repeat Simple_repeat 1 27 0 5 1468 222 37 0 0 chr3 115801520 115801547 -43798236 + (TG)n Simple_repeat Simple_repeat 2 28 0 5 1468 687 252 38 19 chr3 115801550 115801708 -43798075 - B3A SINE B2 -37 161 1 5 1468 211 346 36 24 chr3 115802457 115802540 -43797243 - L2c LINE L2 -196 3191 3108 5 1468 1202 304 92 31 chr3 115803066 115803521 -43796262 - MLT1D LTR MaLR -5 500 18 5 1468 1665 139 11 0 chr3 115804181 115804461 -43795322 - L1_Mur2 LINE L1 -697 5180 4898 5 1468 3066 210 53 3 chr3 115804457 115805331 -43794452 + Lx4B LINE L1 6018 7027 -31 5 1468 189 0 0 0 chr3 115805342 115805363 -43794420 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 5 1468 495 0 0 0 chr3 115805998 115806053 -43793730 + (GA)n Simple_repeat Simple_repeat 2 56 0 5 1468 447 106 0 0 chr3 115806334 115806400 -43793383 + (TC)n Simple_repeat Simple_repeat 1 66 0 5 1468 699 182 51 36 chr3 115806814 115806951 -43792832 + B1_Mur4 SINE Alu 12 150 0 5 1468 186 43 0 0 chr3 115806951 115806974 -43792809 + (CAAAAA)n Simple_repeat Simple_repeat 6 28 0 5 1468 459 0 0 0 chr3 115808323 115808374 -43791409 + (CA)n Simple_repeat Simple_repeat 1 51 0 5 1468 674 211 74 7 chr3 115808380 115808528 -43791255 + RSINE1 SINE B4 2 159 -6 5 1468 646 117 9 9 chr3 115808528 115808640 -43791143 + (GGAA)n Simple_repeat Simple_repeat 4 115 0 5 1468 32 0 0 0 chr3 115808732 115808764 -43791019 + AT_rich Low_complexity Low_complexity 1 32 0 5 1468 472 252 0 118 chr3 115808787 115808922 -43790861 - B1F SINE Alu -29 120 2 5 1468 708 307 78 20 chr3 115809407 115809909 -43789874 + L1ME3B LINE L1 2663 3193 -2953 5 1468 459 92 0 0 chr3 115809961 115810026 -43789757 + (TG)n Simple_repeat Simple_repeat 2 66 0 5 1468 682 112 38 32 chr3 115810036 115810193 -43789590 - Lx9 LINE L1 -1 7643 7486 5 1468 388 241 58 9 chr3 115810197 115810346 -43789437 - Lx9 LINE L1 -263 7381 7095 5 1468 3309 114 25 14 chr3 115810661 115811176 -43788607 - Lx4A LINE L1 -33 7025 6505 5 1468 1343 58 0 17 chr3 115811237 115811253 -43788530 - B2_Mm1a SINE B2 -19 174 161 5 1468 216 0 0 0 chr3 115811253 115811277 -43788506 + (TTTA)n Simple_repeat Simple_repeat 3 26 0 5 1468 1343 58 0 17 chr3 115811277 115811437 -43788346 - B2_Mm1a SINE B2 -33 160 1 5 1468 396 366 103 32 chr3 115811450 115811975 -43787808 + L1ME3B LINE L1 5376 5937 -236 5 1468 1616 278 55 32 chr3 115812286 115812836 -43786947 - Lx5 LINE L1 -18 7032 6478 5 1468 118 62 0 0 chr3 115814621 115814830 -43784953 + AT_rich Low_complexity Low_complexity 1 209 0 5 1468 201 350 41 33 chr3 115814830 115814951 -43784832 + L2a LINE L2 3266 3387 -39 5 1468 33 0 0 0 chr3 115817218 115817251 -43782532 + AT_rich Low_complexity Low_complexity 1 33 0 5 1468 28 29 0 0 chr3 115818323 115818358 -43781425 + AT_rich Low_complexity Low_complexity 1 35 0 5 1468 353 58 0 0 chr3 115818455 115818507 -43781276 - L1_Mus3 LINE L1 -11 6627 6576 5 1468 334 293 83 62 chr3 115818514 115818707 -43781076 - B3A SINE B2 -1 197 1 5 1468 497 76 13 0 chr3 115819443 115819522 -43780261 + (GA)n Simple_repeat Simple_repeat 2 81 0 5 1468 222 37 0 0 chr3 115819522 115819549 -43780234 + (ATTG)n Simple_repeat Simple_repeat 2 28 0 5 1468 268 347 141 61 chr3 115819621 115819983 -43779800 + MLT1H LTR MaLR 108 498 -51 5 1468 1117 63 0 0 chr3 115820640 115820782 -43779001 - B1_Mus2 SINE Alu -5 142 1 5 1468 24 77 0 0 chr3 115820934 115820986 -43778797 + AT_rich Low_complexity Low_complexity 1 52 0 5 1468 603 213 0 0 chr3 115821273 115821381 -43778402 - B1_Mur1 SINE Alu -4 145 38 5 1468 279 191 0 87 chr3 115821325 115821394 -43778389 - 4.5SRNA scRNA scRNA -6 88 26 5 1468 932 156 0 0 chr3 115821415 115821556 -43778227 + B1_Mus2 SINE Alu 1 141 -6 5 1468 22 35 0 0 chr3 115822821 115822850 -43776933 + AT_rich Low_complexity Low_complexity 1 29 0 5 1468 266 185 0 0 chr3 115823046 115823100 -43776683 + L1M2 LINE L1 2483 2536 -4313 5 1468 234 0 0 0 chr3 115823123 115823149 -43776634 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 5 1468 297 256 13 13 chr3 115823165 115823244 -43776539 + ID4 SINE ID 5 83 0 5 1468 270 0 0 0 chr3 115823633 115823663 -43776120 + (A)n Simple_repeat Simple_repeat 1 30 0 5 1468 217 327 29 29 chr3 115824330 115824434 -43775349 - MIRb SINE MIR -23 245 142 5 1468 184 379 97 0 chr3 115824509 115824612 -43775171 - MIRc SINE MIR -135 133 21 5 1468 744 136 0 0 chr3 115824707 115824825 -43774958 - Lx5 LINE L1 -1062 5988 5871 5 1468 1951 171 35 3 chr3 115824826 115825173 -43774610 + Lx5 LINE L1 6689 7046 -4 5 1468 314 258 0 33 chr3 115826195 115826298 -43773485 - L2b LINE L2 -5 3421 3318 5 1468 287 211 10 62 chr3 115826380 115826476 -43773307 + L1MA7 LINE L1 6198 6288 -3 5 1468 202 299 44 15 chr3 115826690 115826758 -43773025 + MIRc SINE MIR 116 185 -83 5 1468 354 23 0 0 chr3 115828412 115828455 -43771328 + (CA)n Simple_repeat Simple_repeat 2 44 0 5 1468 297 0 0 0 chr3 115828455 115828487 -43771296 + (GA)n Simple_repeat Simple_repeat 2 34 0 5 1468 199 339 140 16 chr3 115828541 115828727 -43771056 - MIRc SINE MIR -40 228 20 5 1468 236 375 16 8 chr3 115829521 115829642 -43770141 - MIR SINE MIR -62 146 25 5 1468 909 93 0 0 chr3 115830611 115830740 -43769043 + (TC)n Simple_repeat Simple_repeat 2 130 0 5 1468 459 0 0 0 chr3 115831732 115831783 -43768000 + (GA)n Simple_repeat Simple_repeat 2 52 0 5 1468 261 0 0 0 chr3 115831998 115832027 -43767756 + (T)n Simple_repeat Simple_repeat 1 29 0 5 1468 369 0 0 0 chr3 115832648 115832689 -43767094 + (TG)n Simple_repeat Simple_repeat 1 41 0 5 1468 459 0 0 0 chr3 115833417 115833468 -43766315 + (TA)n Simple_repeat Simple_repeat 1 51 0 5 1468 262 295 17 110 chr3 115834320 115834438 -43765345 - MLT1J LTR MaLR -217 295 189 5 1468 24 32 0 0 chr3 115834905 115834936 -43764847 + AT_rich Low_complexity Low_complexity 1 31 0 5 1468 1283 43 6 6 chr3 115835030 115835193 -43764590 + B2_Mm2 SINE B2 7 169 -26 5 1468 189 94 0 0 chr3 115835195 115835227 -43764556 + (T)n Simple_repeat Simple_repeat 1 32 0 5 1468 183 156 0 0 chr3 115835413 115835445 -43764338 + (CA)n Simple_repeat Simple_repeat 2 33 0 5 1468 2039 117 61 18 chr3 115837109 115837439 -43762344 + Lx LINE L1 6311 6654 0 5 1468 22 0 0 0 chr3 115837439 115837461 -43762322 + AT_rich Low_complexity Low_complexity 1 22 0 5 1468 341 257 29 0 chr3 115837506 115837576 -43762207 + ID4_ SINE ID 4 75 -8 5 1468 198 300 28 28 chr3 115837807 115837879 -43761904 - L2a LINE L2 -77 3349 3278 5 1468 222 295 141 0 chr3 115838035 115838113 -43761670 + PB1D10 SINE Alu 20 108 -9 5 1468 3614 33 2 0 chr3 115838516 115838911 -43760872 + MTA_Mm LTR MaLR 1 396 0 5 1468 776 51 17 8 chr3 115839342 115839461 -43760322 + L1_Mus3 LINE L1 6515 6634 -4 5 1468 249 135 0 0 chr3 115839488 115839540 -43760243 + (T)n Simple_repeat Simple_repeat 1 52 0 5 1468 308 326 221 26 chr3 115839676 115840252 -43759531 - L2 LINE L2 -2441 978 291 5 1468 198 352 133 33 chr3 115840725 115840875 -43758908 - MIRc SINE MIR -88 180 16 5 1468 269 299 0 0 chr3 115843349 115843416 -43756367 + MER5A DNA MER1_type 38 104 -85 5 1468 189 0 0 0 chr3 115843727 115843748 -43756035 + (CTTTG)n Simple_repeat Simple_repeat 4 24 0 5 1468 396 0 0 0 chr3 115843979 115844023 -43755760 + (TG)n Simple_repeat Simple_repeat 1 44 0 5 1468 604 267 112 67 chr3 115844083 115844352 -43755431 - B4 SINE B4 -10 282 2 5 1468 486 0 0 0 chr3 115844662 115844716 -43755067 + (TAAAA)n Simple_repeat Simple_repeat 2 55 0 6 1468 2337 105 3 0 chr3 115845944 115846268 -43753515 - Lx4A LINE L1 -969 6089 5765 6 1468 6082 127 52 4 chr3 115846272 115847193 -43752590 + Lx4A LINE L1 6092 7056 -2 6 1468 239 163 0 0 chr3 115847357 115847400 -43752383 - RMER19C LTR ERVK 0 611 569 6 1468 21 0 0 0 chr3 115847406 115847427 -43752356 + AT_rich Low_complexity Low_complexity 1 21 0 6 1468 2193 223 35 100 chr3 115847462 115848084 -43751699 - RMER19C LTR ERVK -28 583 2 6 1468 4065 149 73 6 chr3 115848171 115848803 -43750980 + L1VL2 LINE L1 99 761 -5574 6 1468 477 0 0 0 chr3 115848803 115848856 -43750927 + (ATG)n Simple_repeat Simple_repeat 1 53 0 6 1468 4065 149 73 6 chr3 115848856 115848951 -43750832 + L1VL2 LINE L1 762 874 -5461 6 1468 8409 70 3 3 chr3 115848958 115850132 -43749651 + L1_Mus3 LINE L1 5464 6638 0 6 1468 558 67 0 0 chr3 115850140 115850215 -43749568 + (GGGA)n Simple_repeat Simple_repeat 2 76 0 6 1468 436 259 12 0 chr3 115850228 115850313 -43749470 + B4 SINE B4 92 177 -115 6 1468 339 25 0 0 chr3 115850329 115850369 -43749414 + (CA)n Simple_repeat Simple_repeat 1 40 0 6 1468 333 0 0 0 chr3 115850369 115850405 -43749378 + (GA)n Simple_repeat Simple_repeat 2 38 0 6 1468 269 26 26 0 chr3 115850896 115850934 -43748849 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 6 1468 3647 64 0 24 chr3 115852606 115853057 -43746726 - L1_Mus1 LINE L1 0 6567 6128 6 1468 243 125 0 0 chr3 115853648 115853688 -43746095 + (CAT)n Simple_repeat Simple_repeat 2 41 0 6 1468 693 286 14 48 chr3 115853838 115854047 -43745736 + MLT2F LTR ERVL 370 571 -92 6 1468 534 287 99 24 chr3 115854447 115854700 -43745083 - B4A SINE B4 -19 273 2 6 1468 414 69 0 0 chr3 115854708 115854766 -43745017 + (TG)n Simple_repeat Simple_repeat 2 59 0 6 1468 399 308 38 43 chr3 115854939 115855149 -43744634 + L1MEc LINE L1 1114 1322 -5078 6 1468 296 335 49 20 chr3 115855690 115855937 -43743846 + L1MEc LINE L1 2873 3126 -3193 6 1468 1007 297 142 36 chr3 115856000 115857240 -43742543 + L1MEc LINE L1 3502 4940 -1379 6 1468 352 259 113 73 chr3 115857514 115857526 -43742257 + B4 SINE B4 68 118 -174 6 1468 559 168 51 34 chr3 115857526 115857643 -43742140 + B1_Mur3 SINE Alu 2 120 -29 6 1468 352 259 113 73 chr3 115857643 115857664 -43742119 + B4 SINE B4 119 223 -69 6 1468 270 182 169 11 chr3 115857849 115857938 -43741845 + L1MC1 LINE L1 6212 6314 -19 6 1468 685 273 59 16 chr3 115857959 115858128 -43741655 + B3A SINE B2 2 181 -17 6 1468 306 0 0 0 chr3 115858128 115858162 -43741621 + (CA)n Simple_repeat Simple_repeat 2 35 0 6 1468 685 273 59 16 chr3 115858162 115858178 -43741605 + B3A SINE B2 182 195 -3 6 1468 902 169 31 61 chr3 115858900 115859096 -43740687 + B2_Mm2 SINE B2 1 190 -5 6 1468 788 261 13 96 chr3 115859109 115859338 -43740445 + B4A SINE B4 5 214 -78 6 1468 6671 46 1 7 chr3 115859338 115860111 -43739672 + L1Md_F2 LINE L1 5812 6580 -2 6 1468 248 230 137 38 chr3 115860118 115860249 -43739534 + Lx8 LINE L1 7330 7473 0 6 1468 578 89 0 11 chr3 115860320 115860411 -43739372 + (CA)n Simple_repeat Simple_repeat 1 90 0 6 1468 1353 240 6 91 chr3 115861434 115861796 -43737987 + MTE2b LTR MaLR 39 369 -10 6 1468 255 125 0 0 chr3 115861924 115861964 -43737819 + (ATGGTG)n Simple_repeat Simple_repeat 6 45 0 6 1468 1485 40 0 0 chr3 115861964 115862293 -43737490 + (TGG)n Simple_repeat Simple_repeat 1 329 0 6 1468 417 340 38 24 chr3 115862388 115862599 -43737184 - Charlie13b DNA Charlie -171 341 128 6 1468 781 85 58 5 chr3 115862724 115862959 -43736824 + (TG)n Simple_repeat Simple_repeat 1 247 0 6 1468 986 60 35 6 chr3 115862970 115863139 -43736644 + (TG)n Simple_repeat Simple_repeat 1 174 0 6 1468 558 341 13 48 chr3 115863227 115863455 -43736328 - B4 SINE B4 -72 220 1 6 1468 21 36 0 0 chr3 115864410 115864438 -43735345 + AT_rich Low_complexity Low_complexity 1 28 0 6 1468 624 279 23 0 chr3 115864444 115864573 -43735210 - RSINE1 SINE B4 -30 135 4 6 1468 188 111 28 0 chr3 115864882 115864918 -43734865 + (CA)n Simple_repeat Simple_repeat 1 37 0 6 1468 819 172 8 0 chr3 115865852 115865980 -43733803 + B3 SINE B2 1 129 -87 6 1469 723 287 53 15 chr3 115867726 115867991 -43731792 + Lx8 LINE L1 7197 7471 -2 6 1469 314 279 118 21 chr3 115868835 115869073 -43730710 - L1M5 LINE L1 -535 5589 5329 6 1469 259 252 95 43 chr3 115869190 115869306 -43730477 - MER104 DNA Tc2 -22 159 38 6 1469 657 73 0 0 chr3 115869744 115869840 -43729943 + (TG)n Simple_repeat Simple_repeat 2 97 0 6 1469 518 291 54 60 chr3 115869898 115870066 -43729717 + B4A SINE B4 2 168 -124 6 1469 189 109 65 0 chr3 115870470 115870516 -43729267 + (TAA)n Simple_repeat Simple_repeat 2 50 0 6 1469 404 183 82 38 chr3 115870645 115870804 -43728979 - Lx9 LINE L1 -1 7643 7478 6 1469 210 143 0 0 chr3 115870846 115870881 -43728902 + (TA)n Simple_repeat Simple_repeat 1 35 0 6 1469 2215 184 45 0 chr3 115870884 115870919 -43728864 - Lx9 LINE L1 -128 7516 7479 6 1469 282 29 0 0 chr3 115870919 115870954 -43728829 + (GA)n Simple_repeat Simple_repeat 2 36 0 6 1469 2215 184 45 0 chr3 115870954 115871337 -43728446 - Lx9 LINE L1 -166 7478 7080 6 1469 476 252 217 47 chr3 115871353 115871580 -43728203 - RMER4B LTR ERVK -6 579 343 6 1469 329 246 23 130 chr3 115871624 115871755 -43728028 - MTE2a LTR MaLR -43 336 220 6 1469 350 252 0 57 chr3 115871755 115871849 -43727934 + RMER4B LTR ERVK 467 556 -29 6 1469 180 0 0 0 chr3 115871849 115871869 -43727914 + (CAA)n Simple_repeat Simple_repeat 2 21 0 6 1469 562 294 56 69 chr3 115871907 115872123 -43727660 - MTE2a LTR MaLR -166 213 1 6 1469 1095 310 38 74 chr3 115872717 115873346 -43726437 + Lx9 LINE L1 6707 7437 -207 6 1469 186 43 0 0 chr3 115873346 115873369 -43726414 + (TC)n Simple_repeat Simple_repeat 2 24 0 6 1469 492 32 0 0 chr3 115873369 115873430 -43726353 + (TG)n Simple_repeat Simple_repeat 1 62 0 6 1469 909 324 70 63 chr3 115873430 115873543 -43726240 + Lx9 LINE L1 7327 7454 -19 6 1469 927 0 0 0 chr3 115873869 115873972 -43725811 + (TTC)n Simple_repeat Simple_repeat 2 104 0 6 1469 5139 211 9 18 chr3 115875079 115876118 -43723665 - Lx5 LINE L1 0 7050 6022 6 1469 2270 121 38 0 chr3 115876114 115876461 -43723322 + Lx5 LINE L1 5656 6015 -1035 6 1469 412 260 59 59 chr3 115876576 115876711 -43723072 + RSINE1 SINE B4 2 136 -29 6 1469 183 156 0 0 chr3 115876736 115876768 -43723015 + (CCTG)n Simple_repeat Simple_repeat 1 32 0 6 1469 208 167 23 23 chr3 115876768 115876811 -43722972 + (TCCA)n Simple_repeat Simple_repeat 2 44 0 6 1469 477 34 0 0 chr3 115876840 115876899 -43722884 + (TAA)n Simple_repeat Simple_repeat 3 61 0 6 1469 24 0 0 0 chr3 115877855 115877879 -43721904 + AT_rich Low_complexity Low_complexity 1 24 0 6 1469 510 196 0 0 chr3 115878051 115878163 -43721620 + (TG)n Simple_repeat Simple_repeat 1 112 0 6 1469 991 203 0 71 chr3 115878163 115878359 -43721424 - B3A SINE B2 -16 182 1 6 1469 1025 211 14 40 chr3 115878372 115878594 -43721189 - B3 SINE B2 0 216 1 6 1469 1112 67 145 12 chr3 115879089 115879255 -43720528 - B2_Mm2 SINE B2 -6 189 2 6 1469 804 288 43 99 chr3 115879338 115879712 -43720071 + ORR1E LTR MaLR 2 354 -5 6 1469 325 37 56 0 chr3 115879999 115880053 -43719730 + (ATTG)n Simple_repeat Simple_repeat 3 59 0 6 1469 909 89 0 54 chr3 115880726 115880892 -43718891 + (TTC)n Simple_repeat Simple_repeat 3 159 0 6 1469 588 29 0 0 chr3 115880883 115880953 -43718830 + (TC)n Simple_repeat Simple_repeat 1 70 0 6 1469 605 258 23 8 chr3 115880983 115881112 -43718671 + RSINE1 SINE B4 3 133 -32 6 1469 1231 191 9 4 chr3 115881119 115881345 -43718438 + ORR1B1 LTR MaLR 160 386 -8 6 1469 262 252 118 59 chr3 115881351 115881486 -43718297 - L1M3 LINE L1 -664 5525 5383 6 1469 369 0 0 0 chr3 115882332 115882373 -43717410 + (TTTTG)n Simple_repeat Simple_repeat 2 42 0 6 1469 1174 59 0 0 chr3 115882742 115882877 -43716906 + B1_Mm SINE Alu 1 135 -12 6 1469 543 16 0 0 chr3 115882886 115882950 -43716833 + (CA)n Simple_repeat Simple_repeat 1 64 0 6 1469 1489 55 38 16 chr3 115884181 115884366 -43715417 + B2_Mm2 SINE B2 2 190 -5 6 1469 320 77 62 0 chr3 115884415 115884480 -43715303 + (CA)n Simple_repeat Simple_repeat 2 70 0 6 1469 891 160 200 0 chr3 115884843 115885018 -43714765 + B3 SINE B2 1 210 -6 6 1469 5010 56 0 0 chr3 115885134 115885744 -43714039 + L1Md_F2 LINE L1 4976 5585 -298 6 1469 8540 51 1 0 chr3 115885745 115886728 -43713055 + L1Md_F2 LINE L1 5587 6570 -12 6 1469 504 0 0 0 chr3 115887160 115887216 -43712567 + (GTTTG)n Simple_repeat Simple_repeat 4 59 0 6 1469 220 138 15 15 chr3 115887220 115887286 -43712497 + T-rich Low_complexity Low_complexity 1 66 0 6 1469 1147 249 30 109 chr3 115888086 115888523 -43711260 - MTE2a LTR MaLR -14 405 7 6 1469 1690 264 82 15 chr3 115888614 115889275 -43710508 - L1MB3 LINE L1 -19 6164 5460 6 1469 216 279 50 67 chr3 115890726 115890845 -43708938 + L2 LINE L2 2701 2817 -602 6 1469 397 238 0 0 chr3 115890874 115890954 -43708829 + B3A SINE B2 9 88 -110 6 1469 317 228 129 17 chr3 115891952 115892068 -43707715 + MLT1I LTR MaLR 26 154 -257 6 1469 468 0 0 0 chr3 115893243 115893295 -43706488 + (TAAA)n Simple_repeat Simple_repeat 2 53 0 6 1469 220 98 24 0 chr3 115895131 115895172 -43704611 - PB1D10 SINE Alu 0 117 76 6 1469 1350 193 61 132 chr3 115895646 115895863 -43703920 + ORR1C2 LTR MaLR 1 198 -186 6 1469 765 99 0 0 chr3 115895863 115895984 -43703799 + (TC)n Simple_repeat Simple_repeat 2 122 0 6 1469 402 21 0 0 chr3 115895984 115896030 -43703753 + (TG)n Simple_repeat Simple_repeat 2 48 0 6 1469 1350 193 61 132 chr3 115896030 115896205 -43703578 + ORR1C2 LTR MaLR 199 365 -19 6 1469 626 242 60 0 chr3 115896673 115896855 -43702928 - RCHARR1 DNA MER1_type -6 968 776 6 1469 1349 248 96 14 chr3 115896865 115897294 -43702489 - RCHARR1 DNA MER1_type -505 469 6 6 1469 237 180 0 0 chr3 115897366 115897416 -43702367 + (TG)n Simple_repeat Simple_repeat 2 51 0 6 1469 380 314 139 56 chr3 115898351 115898689 -43701094 - MLT1G1 LTR MaLR -8 571 206 6 1469 256 275 100 0 chr3 115899735 115899815 -43699968 + L1ME2z LINE L1 5587 5674 -770 6 1469 619 296 64 60 chr3 115899829 115900110 -43699673 + B4A SINE B4 8 289 -3 6 1469 220 268 18 0 chr3 115900113 115900169 -43699614 + (CA)n Simple_repeat Simple_repeat 1 57 0 6 1469 330 319 100 65 chr3 115900314 115900418 -43699365 + L1ME2z LINE L1 5908 6015 -429 6 1469 1031 164 124 5 chr3 115900418 115900620 -43699163 + URR1A DNA MER1_type 1 226 0 6 1469 330 319 100 65 chr3 115900620 115901025 -43698758 + L1ME2z LINE L1 6016 6435 -9 6 1469 462 259 104 204 chr3 115901040 115901412 -43698371 + MTD LTR MaLR 6 365 -54 6 1469 717 12 0 0 chr3 115901412 115901494 -43698289 + (TCTCC)n Simple_repeat Simple_repeat 3 84 0 7 1469 462 219 228 0 chr3 115901494 115901543 -43698240 + MTD LTR MaLR 327 403 -16 6 1469 187 319 0 71 chr3 115901664 115901762 -43698021 - L2 LINE L2 -731 2688 2598 7 1469 222 231 19 0 chr3 115901788 115901840 -43697943 + B1F2 SINE Alu 6 58 -91 7 1469 563 272 81 0 chr3 115902195 115902331 -43697452 + RSINE1 SINE B4 5 151 -14 7 1469 601 290 77 0 chr3 115902466 115902673 -43697110 + ID_B1 SINE B4 1 223 -1 7 1469 330 242 116 31 chr3 115903359 115903490 -43696293 - MIRc SINE MIR -64 204 53 7 1469 469 325 118 25 chr3 115906110 115906432 -43693351 - L1MC3 LINE L1 -349 7436 7085 7 1469 1167 51 0 0 chr3 115906479 115906617 -43693166 + B1_Mus2 SINE Alu 2 139 -8 7 1469 242 29 29 0 chr3 115906617 115906652 -43693131 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 7 1469 295 287 39 29 chr3 115908848 115908952 -43690831 - MER5A DNA MER1_type -34 155 51 7 1469 717 12 0 0 chr3 115909824 115909906 -43689877 + (GTTTG)n Simple_repeat Simple_repeat 2 83 0 7 1469 299 270 112 81 chr3 115910468 115910629 -43689154 + B4A SINE B4 127 292 0 7 1469 545 241 0 0 chr3 115910693 115910801 -43688982 + PB1D10 SINE Alu 10 117 0 7 1469 342 0 0 0 chr3 115910908 115910946 -43688837 + (TCC)n Simple_repeat Simple_repeat 3 40 0 7 1469 189 0 0 0 chr3 115911285 115911306 -43688477 + (CACCC)n Simple_repeat Simple_repeat 2 22 0 7 1469 220 200 14 28 chr3 115911612 115911684 -43688099 + (TTATA)n Simple_repeat Simple_repeat 5 75 0 7 1469 291 54 0 0 chr3 115911815 115911852 -43687931 + (TTTG)n Simple_repeat Simple_repeat 1 37 0 7 1469 734 159 8 0 chr3 115912580 115912712 -43687071 - URR1B DNA MER1_type 0 225 93 7 1469 1157 45 6 0 chr3 115912713 115912870 -43686913 + B2_Mm1a SINE B2 1 158 -35 7 1469 639 0 0 0 chr3 115912871 115912942 -43686841 + (GAAA)n Simple_repeat Simple_repeat 2 72 0 7 1469 240 234 0 0 chr3 115912953 115913000 -43686783 - URR1B DNA MER1_type -121 104 58 7 1469 321 312 73 54 chr3 115914616 115914877 -43684906 - MLT1J2 LTR MaLR -160 288 23 7 1469 192 77 0 0 chr3 115916098 115916124 -43683659 + (GAAA)n Simple_repeat Simple_repeat 3 28 0 7 1469 274 227 15 0 chr3 115916347 115916413 -43683370 + L1MA7 LINE L1 5828 5894 -397 7 1469 3570 98 6 4 chr3 115916861 115917345 -43682438 - L1_Mus3 LINE L1 -110 6528 6044 7 1469 1790 62 95 0 chr3 115917337 115917579 -43682204 + L1_Mus3 LINE L1 5629 5893 -745 7 1469 275 340 44 44 chr3 115917580 115917783 -43682000 + L2 LINE L2 2301 2503 -916 7 1469 303 264 104 37 chr3 115917786 115917803 -43681980 - B3 SINE B2 -1 215 194 7 1469 833 172 7 14 chr3 115917803 115917950 -43681833 - B1_Mur4 SINE Alu -2 148 3 7 1469 308 235 70 19 chr3 115917950 115918066 -43681717 - B3A SINE B2 -23 193 73 7 1469 599 303 114 22 chr3 115918191 115918464 -43681319 + MLT1A0 LTR MaLR 68 365 0 7 1469 222 37 0 0 chr3 115919300 115919327 -43680456 + (TG)n Simple_repeat Simple_repeat 2 28 0 7 1469 3101 165 73 12 chr3 115919517 115920118 -43679665 - Lx9 LINE L1 0 7644 7007 7 1469 1957 188 17 3 chr3 115920116 115920390 -43679393 - Lx9 LINE L1 -779 6865 6587 7 1469 2250 104 186 0 chr3 115920390 115920744 -43679039 + RLTR9B2 LTR ERVK 1 420 0 7 1469 1957 188 17 3 chr3 115920744 115920831 -43678952 - Lx9 LINE L1 -1058 6586 6499 7 1469 194 313 119 26 chr3 115921663 115921814 -43677969 - L2 LINE L2 -455 2964 2800 7 1469 387 186 0 0 chr3 115922367 115922464 -43677319 + (TGG)n Simple_repeat Simple_repeat 1 97 0 7 1469 401 241 6 132 chr3 115922501 115922668 -43677115 + B1_Mur2 SINE Alu 4 149 0 7 1469 2012 164 56 22 chr3 115922837 115923271 -43676512 + ORR1A2-int LTR MaLR 1606 1963 0 7 1469 1706 95 10 59 chr3 115923271 115923561 -43676222 + ORR1A2 LTR MaLR 1 276 -51 7 1469 23 0 0 0 chr3 115923561 115923584 -43676199 + AT_rich Low_complexity Low_complexity 1 23 0 7 1469 688 273 10 10 chr3 115926113 115926309 -43673474 + B3A SINE B2 2 197 -1 7 1469 474 33 0 0 chr3 115926384 115926444 -43673339 + (CATA)n Simple_repeat Simple_repeat 2 61 0 7 1469 2547 136 72 39 chr3 115927344 115927827 -43671956 + Lx2B LINE L1 6502 7000 0 7 1469 1118 261 73 36 chr3 115928040 115928517 -43671266 - L1MC2 LINE L1 -176 6168 5674 7 1469 234 197 95 32 chr3 115928644 115928707 -43671076 - L1MC2 LINE L1 -1374 4772 4706 7 1469 232 226 24 54 chr3 115928751 115928919 -43670864 + (CATA)n Simple_repeat Simple_repeat 4 166 0 7 1469 1140 282 80 14 chr3 115928950 115929439 -43670344 - L1MC2 LINE L1 -1483 4663 4143 7 1469 2282 169 2 91 chr3 115929432 115929926 -43669857 - Lx2B LINE L1 0 7000 6551 7 1469 316 299 10 20 chr3 115929981 115930080 -43669703 - B4A SINE B4 -194 98 1 7 1469 23 0 0 0 chr3 115930435 115930458 -43669325 + AT_rich Low_complexity Low_complexity 1 23 0 7 1469 596 275 19 72 chr3 115930542 115930711 -43669072 + B3A SINE B2 1 165 -33 7 1469 189 0 0 0 chr3 115930711 115930732 -43669051 + (CA)n Simple_repeat Simple_repeat 2 22 0 7 1469 596 275 19 72 chr3 115930732 115930770 -43669013 + B3A SINE B2 166 197 -1 7 1469 398 224 0 43 chr3 115930854 115931041 -43668742 + (TG)n Simple_repeat Simple_repeat 2 180 0 7 1469 1691 279 103 13 chr3 115932147 115933275 -43666508 - Lx6 LINE L1 -32 7428 5975 7 1469 1384 283 88 28 chr3 115933712 115934358 -43665425 - L1MC2 LINE L1 -126 6218 5534 7 1469 408 292 59 48 chr3 115935735 115935922 -43663861 - ORR1E LTR MaLR -169 190 2 7 1469 473 270 88 44 chr3 115936550 115936732 -43663051 + ORR1E LTR MaLR 1 190 -169 7 1469 311 333 34 13 chr3 115937023 115937172 -43662611 + L1M7 LINE L1 1216 1367 -4851 7 1469 808 282 10 0 chr3 115937249 115937458 -43662325 + B3 SINE B2 1 211 -5 7 1469 22 70 0 0 chr3 115937540 115937583 -43662200 + AT_rich Low_complexity Low_complexity 1 43 0 7 1469 1705 163 47 64 chr3 115937636 115937997 -43661786 + ORR1D1 LTR MaLR 20 374 0 7 1469 977 216 76 11 chr3 115938007 115938286 -43661497 + ORR1D2 LTR MaLR 75 374 0 7 1469 427 304 202 10 chr3 115938346 115938539 -43661244 - Tigger5 DNA MER2_type -2176 230 1 7 1469 1186 75 0 0 chr3 115938925 115939072 -43660711 + B1_Mus2 SINE Alu 1 147 0 7 1469 516 32 0 0 chr3 115939092 115939154 -43660629 + (GGAA)n Simple_repeat Simple_repeat 3 64 0 7 1469 254 340 85 45 chr3 115939221 115939467 -43660316 + L1MC LINE L1 5568 5823 -2059 7 1469 474 293 33 26 chr3 115940560 115940711 -43659072 + B3A SINE B2 31 182 -16 7 1469 2025 113 13 0 chr3 115940726 115941036 -43658747 + ORR1A2 LTR MaLR 1 314 -13 7 1469 990 243 0 18 chr3 115941702 115941920 -43657863 + B3 SINE B2 3 216 0 7 1469 618 315 146 40 chr3 115943150 115943623 -43656160 + MT2A LTR ERVL 10 532 -1 7 1469 26 64 0 0 chr3 115943808 115943855 -43655928 + AT_rich Low_complexity Low_complexity 1 47 0 7 1469 289 314 12 0 chr3 115944504 115944590 -43655193 + GA-rich Low_complexity Low_complexity 2 88 0 7 1469 492 268 36 0 chr3 115946255 115946367 -43653416 + RSINE1 SINE B4 12 127 -38 7 1469 471 48 0 0 chr3 115946387 115946449 -43653334 + (CA)n Simple_repeat Simple_repeat 1 62 0 7 1469 963 99 0 0 chr3 115946459 115946600 -43653183 + (GGGAGA)n Simple_repeat Simple_repeat 3 143 0 7 1469 454 169 94 182 chr3 115946947 115947106 -43652677 - MT2A LTR ERVL -386 147 3 7 1469 266 312 82 34 chr3 115947744 115947890 -43651893 - L3 LINE CR1 -110 4379 4227 7 1469 186 250 0 0 chr3 115947933 115947969 -43651814 + MIRb SINE MIR 29 64 -204 7 1469 400 291 17 0 chr3 115948142 115948259 -43651524 - B1F1 SINE Alu -28 121 3 7 1469 231 103 0 0 chr3 115949812 115949851 -43649932 + (TCTG)n Simple_repeat Simple_repeat 2 40 0 7 1469 258 143 0 0 chr3 115949856 115949905 -43649878 + (TG)n Simple_repeat Simple_repeat 2 50 0 7 1469 210 227 0 0 chr3 115949907 115949951 -43649832 + (CA)n Simple_repeat Simple_repeat 1 44 0 7 1469 1054 290 11 14 chr3 115951064 115951347 -43648436 - B4A SINE B4 -10 282 1 7 1469 21 0 0 0 chr3 115951926 115951947 -43647836 + AT_rich Low_complexity Low_complexity 1 21 0 7 1469 192 97 0 0 chr3 115954828 115954859 -43644924 + (CGG)n Simple_repeat Simple_repeat 2 32 0 7 1469 414 0 0 0 chr3 115955887 115955933 -43643850 + (CA)n Simple_repeat Simple_repeat 2 47 0 7 1469 414 0 0 0 chr3 115956535 115956581 -43643202 + (TC)n Simple_repeat Simple_repeat 1 46 0 7 1469 348 24 0 0 chr3 115956771 115956812 -43642971 + (CA)n Simple_repeat Simple_repeat 1 41 0 7 1469 1146 247 101 16 chr3 115956985 115957409 -43642374 + L1MC1 LINE L1 5781 6240 -93 7 1469 435 149 0 0 chr3 115957431 115957505 -43642278 + (TC)n Simple_repeat Simple_repeat 1 74 0 7 1469 729 241 58 0 chr3 115957505 115957696 -43642087 - B4A SINE B4 -86 206 5 7 1469 26 0 0 0 chr3 115958319 115958345 -43641438 + AT_rich Low_complexity Low_complexity 1 26 0 7 1469 217 0 61 0 chr3 115958806 115958839 -43640944 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 7 1469 291 85 0 0 chr3 115958902 115958949 -43640834 + (T)n Simple_repeat Simple_repeat 1 47 0 7 1469 227 263 0 0 chr3 115958957 115959014 -43640769 + L2b LINE L2 3319 3375 0 7 1469 627 211 19 76 chr3 115959870 115960080 -43639703 + MT2C_Mm LTR ERVL 246 443 -32 7 1469 343 367 21 26 chr3 115960175 115960368 -43639415 - LTR31 LTR ERV1 -256 363 172 7 1469 1080 107 21 1 chr3 115960376 115960560 -43639223 + B2_Mm2 SINE B2 1 198 -18 7 1469 333 0 0 0 chr3 115960800 115960837 -43638946 + (A)n Simple_repeat Simple_repeat 1 37 0 7 1469 276 237 112 56 chr3 115961054 115961197 -43638586 - MIR SINE MIR -28 234 84 7 1469 378 0 0 0 chr3 115961576 115961618 -43638165 + (TG)n Simple_repeat Simple_repeat 2 43 0 7 1469 696 197 43 28 chr3 115961665 115961806 -43637977 - B1_Mur1 SINE Alu 0 149 7 7 1469 1410 74 21 26 chr3 115961882 115962076 -43637707 + B2_Mm2 SINE B2 2 194 -1 7 1469 252 0 0 0 chr3 115962301 115962329 -43637454 + (TG)n Simple_repeat Simple_repeat 2 29 0 7 1469 921 278 23 0 chr3 115962336 115962602 -43637181 - B4A SINE B4 -18 274 3 7 1469 350 340 39 61 chr3 115962708 115962987 -43636796 - L2c LINE L2 -7 3380 3108 7 1469 3582 99 65 66 chr3 115963131 115963767 -43636016 - L1_Mus4 LINE L1 -4 6632 5998 8 1469 956 239 186 0 chr3 115963907 115964192 -43635591 - MTD LTR MaLR -58 361 24 8 1469 500 285 82 51 chr3 115964223 115964478 -43635305 + ORR1E LTR MaLR 92 354 -5 8 1469 358 311 73 0 chr3 115964862 115965039 -43634744 - MER115 DNA Tip100 0 693 504 8 1469 226 363 123 10 chr3 115965145 115965348 -43634435 - MER115 DNA Tip100 -329 364 139 8 1469 212 365 68 17 chr3 115965350 115965467 -43634316 - MIRm SINE MIR -149 127 5 8 1469 1471 178 27 20 chr3 115966700 115966993 -43632790 + ORR1B2 LTR MaLR 92 386 -8 8 1469 428 260 16 24 chr3 115966997 115967123 -43632660 + MER20 DNA MER1_type 90 214 -5 8 1469 591 148 0 0 chr3 115967479 115967580 -43632203 - ORR1C1 LTR MaLR 0 378 278 8 1469 339 157 0 0 chr3 115967593 115967644 -43632139 + MERVL_2A-int LTR ERVL 5572 5622 -139 8 1469 274 162 51 51 chr3 115967644 115967722 -43632061 + ORR1B2-int LTR MaLR 562 639 -1324 8 1469 405 107 0 0 chr3 115967722 115967778 -43632005 + MERVL_2A-int LTR ERVL 5706 5761 0 8 1469 285 127 91 0 chr3 115967783 115967838 -43631945 + MT2B LTR ERVL 6 65 -536 8 1469 328 233 0 14 chr3 115967838 115967912 -43631871 + MERVL_2A-int LTR ERVL 2152 2224 -3537 8 1469 362 165 9 23 chr3 115967912 115968005 -43631778 + ORR1B2-int LTR MaLR 1444 1508 -1 8 1469 1894 184 24 40 chr3 115968006 115968379 -43631404 + ORR1B2 LTR MaLR 1 367 0 8 1469 242 336 44 26 chr3 115968420 115968533 -43631250 + Charlie4z DNA MER1_type 53 167 0 8 1469 444 286 23 63 chr3 115968537 115968871 -43630912 + MLT1A0 LTR MaLR 6 364 -1 8 1469 1157 48 7 0 chr3 115968904 115969050 -43630733 + B1_Mus2 SINE Alu 1 147 0 8 1469 628 108 47 7 chr3 115969695 115969844 -43629939 + (TG)n Simple_repeat Simple_repeat 2 156 0 8 1469 620 147 36 30 chr3 115969872 115970379 -43629404 + (TG)n Simple_repeat Simple_repeat 1 510 0 8 1469 231 114 0 0 chr3 115970374 115970409 -43629374 + (GTATG)n Simple_repeat Simple_repeat 1 35 0 8 1469 540 148 41 12 chr3 115970463 115970634 -43629149 + (TG)n Simple_repeat Simple_repeat 1 176 0 8 1469 712 278 110 67 chr3 115970869 115971386 -43628397 + Lx9 LINE L1 7097 7635 -9 8 1469 242 264 113 30 chr3 115971547 115971715 -43628068 + MER68 LTR ERVL 279 460 -103 8 1469 2935 70 0 0 chr3 115971855 115972228 -43627555 - L1_Mus1 LINE L1 0 6567 6195 8 1469 1425 69 32 0 chr3 115972391 115972579 -43627204 - B2_Mm2 SINE B2 0 195 2 8 1469 281 157 54 33 chr3 115973273 115973365 -43626418 + (TAGA)n Simple_repeat Simple_repeat 3 96 0 8 1469 188 163 0 23 chr3 115975685 115975729 -43624054 + (CATATA)n Simple_repeat Simple_repeat 4 46 0 8 1469 26 0 0 0 chr3 115977221 115977247 -43622536 + AT_rich Low_complexity Low_complexity 1 26 0 8 1469 477 0 0 0 chr3 115978356 115978409 -43621374 + (TTA)n Simple_repeat Simple_repeat 2 54 0 8 1469 306 0 0 0 chr3 115978717 115978751 -43621032 + (CA)n Simple_repeat Simple_repeat 2 35 0 8 1469 347 57 38 0 chr3 115979055 115979108 -43620675 + (TATAA)n Simple_repeat Simple_repeat 1 55 0 8 1469 372 264 226 17 chr3 115980920 115981101 -43618682 - MIR SINE MIR -13 249 31 8 1469 742 206 0 7 chr3 115981331 115981478 -43618305 + B1_Mur3 SINE Alu 2 147 -2 8 1469 471 18 0 0 chr3 115981532 115981588 -43618195 + (TG)n Simple_repeat Simple_repeat 2 57 0 8 1469 333 241 108 33 chr3 115984951 115985071 -43614712 + L1MA6 LINE L1 6166 6294 -6 8 1469 636 254 118 27 chr3 115985135 115985398 -43614385 + B4A SINE B4 1 287 -5 8 1469 226 300 132 44 chr3 115986552 115986688 -43613095 + B1F SINE Alu 1 148 -1 8 1469 335 287 10 19 chr3 115987886 115987989 -43611794 + PB1D10 SINE Alu 1 102 -15 8 1469 741 53 0 0 chr3 115988016 115988110 -43611673 + (GGA)n Simple_repeat Simple_repeat 2 95 0 8 1469 1135 49 14 0 chr3 115988783 115988926 -43610857 + B1_Mus2 SINE Alu 3 147 0 8 1469 801 0 0 0 chr3 115988940 115989029 -43610754 + (GAAA)n Simple_repeat Simple_repeat 4 92 0 8 1469 415 298 24 37 chr3 115989358 115989522 -43610261 + RSINE1 SINE B4 2 163 -2 8 1469 628 256 139 40 chr3 115989829 115990219 -43609564 + L1_Mur3 LINE L1 5074 5507 -373 8 1469 1882 224 9 17 chr3 115990219 115990641 -43609142 + MTD LTR MaLR 1 419 0 8 1469 628 256 139 40 chr3 115990641 115990673 -43609110 + L1_Mur3 LINE L1 5508 5538 -342 8 1469 552 126 70 8 chr3 115990902 115991394 -43608389 + (CA)n Simple_repeat Simple_repeat 1 522 0 8 1469 180 125 107 0 chr3 115991437 115991493 -43608290 + GA-rich Low_complexity Low_complexity 1 62 0 8 1469 452 219 95 0 chr3 115991602 115991707 -43608076 + B1_Mur1 SINE Alu 6 120 -29 8 1469 42 20 0 0 chr3 115991778 115991827 -43607956 + AT_rich Low_complexity Low_complexity 1 49 0 8 1469 284 304 10 11 chr3 115992233 115992344 -43607439 - MIRb SINE MIR -138 130 14 8 1469 240 111 0 0 chr3 115992510 115992546 -43607237 + (GGGA)n Simple_repeat Simple_repeat 2 37 0 8 1469 194 364 23 0 chr3 115992634 115992722 -43607061 + MIRm SINE MIR 39 128 -148 8 1469 459 78 0 0 chr3 115993664 115993728 -43606055 + (TG)n Simple_repeat Simple_repeat 2 65 0 8 1469 466 289 93 68 chr3 115993729 115993966 -43605817 - B4 SINE B4 -25 267 25 8 1469 410 102 0 14 chr3 115994429 115994499 -43605284 + (GGA)n Simple_repeat Simple_repeat 1 69 0 8 1469 464 235 20 54 chr3 115995078 115995218 -43604565 + B3 SINE B2 81 216 0 8 1469 611 180 0 7 chr3 115995387 115995538 -43604245 + (CA)n Simple_repeat Simple_repeat 2 151 0 8 1469 258 81 0 0 chr3 115996778 115996815 -43602968 + (CTG)n Simple_repeat Simple_repeat 1 37 0 8 1469 225 292 0 53 chr3 115998525 115998601 -43601182 + L2b LINE L2 3128 3199 -176 8 1470 1006 220 9 9 chr3 115999441 115999652 -43600131 + B3 SINE B2 6 216 0 8 1470 607 190 17 0 chr3 115999688 115999804 -43599979 + B1_Mur4 SINE Alu 22 139 -11 8 1470 1192 176 4 35 chr3 116000508 116000737 -43599046 - URR1A DNA MER1_type 0 226 5 1 1470 5334 28 0 10 chr3 116002172 116002795 -43596988 + L1Md_F3 LINE L1 5966 6582 -2 2 1470 423 236 55 0 chr3 116003097 116003207 -43596576 - PB1D10 SINE Alu 0 117 2 3 1470 1552 138 7 29 chr3 116003308 116003585 -43596198 + Lx3B LINE L1 6701 6971 -2 4 1470 1729 190 54 13 chr3 116003700 116004073 -43595710 + ORR1D1-int LTR MaLR 983 1370 0 5 1470 1373 206 77 21 chr3 116004075 116004240 -43595543 + ORR1D1 LTR MaLR 3 171 -203 5 1470 635 67 11 0 chr3 116004240 116004329 -43595454 + (TC)n Simple_repeat Simple_repeat 2 91 0 6 1470 1373 206 77 21 chr3 116004329 116004488 -43595295 + ORR1D1 LTR MaLR 172 348 -26 5 1470 335 60 20 0 chr3 116004488 116004538 -43595245 + (TAGA)n Simple_repeat Simple_repeat 4 54 0 7 1470 1373 206 77 21 chr3 116004538 116004550 -43595233 + ORR1D1 LTR MaLR 349 359 -15 5 1470 362 321 50 0 chr3 116005590 116005730 -43594053 - ID_B1 SINE B4 -3 221 75 8 1470 276 318 15 67 chr3 116006061 116006196 -43593587 - MTEa LTR MaLR -22 357 230 9 1470 32 0 0 0 chr3 116006375 116006407 -43593376 + AT_rich Low_complexity Low_complexity 1 32 0 1 1470 286 218 23 93 chr3 116006808 116006894 -43592889 + ID4 SINE ID 1 80 -3 1 1470 216 276 17 0 chr3 116006897 116006955 -43592828 + GA-rich Low_complexity Low_complexity 5 63 0 1 1470 227 222 0 0 chr3 116007663 116007708 -43592075 + MIR SINE MIR 190 234 -28 1 1470 704 230 16 136 chr3 116008493 116008814 -43590969 + ORR1E LTR MaLR 36 344 -35 1 1470 271 223 51 41 chr3 116008980 116009078 -43590705 + MLT1A0 LTR MaLR 26 124 -241 1 1470 559 278 130 23 chr3 116009484 116009745 -43590038 - B4A SINE B4 -2 290 2 1 1470 447 233 0 11 chr3 116009831 116009922 -43589861 + B1F SINE Alu 2 91 -58 1 1470 627 311 0 24 chr3 116010704 116010869 -43588914 + RSINE1 SINE B4 5 165 0 1 1470 468 0 0 0 chr3 116010895 116010947 -43588836 + (TAGA)n Simple_repeat Simple_repeat 2 53 0 1 1470 734 168 51 0 chr3 116011941 116012078 -43587705 + B1_Mur4 SINE Alu 1 144 -6 2 1470 405 58 0 0 chr3 116012084 116012136 -43587647 + (TAGA)n Simple_repeat Simple_repeat 4 55 0 2 1470 488 163 31 0 chr3 116012346 116012475 -43587308 + CT-rich Low_complexity Low_complexity 1 133 0 2 1470 186 103 0 0 chr3 116013934 116013963 -43585820 + (GTATG)n Simple_repeat Simple_repeat 1 29 0 2 1470 451 211 32 0 chr3 116013961 116014117 -43585666 + (TG)n Simple_repeat Simple_repeat 2 162 0 2 1470 594 321 20 44 chr3 116014128 116014424 -43585359 - B4A SINE B4 0 292 4 2 1470 381 255 10 10 chr3 116014909 116015008 -43584775 + L1M3 LINE L1 5529 5627 -553 2 1470 298 255 123 0 chr3 116015036 116015142 -43584641 + L1M3 LINE L1 5708 5826 -348 2 1470 267 242 30 0 chr3 116015142 116015208 -43584575 + ID SINE ID 1 68 -156 2 1470 266 293 12 24 chr3 116015208 116015226 -43584557 + ID4_ SINE ID 1 83 0 2 1470 341 338 20 0 chr3 116015374 116015522 -43584261 + L1MB3 LINE L1 5979 6129 -54 2 1470 328 181 67 118 chr3 116016147 116016165 -43583618 - B1F2 SINE Alu -30 119 7 3 1470 384 167 20 109 chr3 116016165 116016266 -43583517 - ID_B1 SINE B4 -45 179 88 3 1470 1184 68 0 0 chr3 116016536 116016683 -43583100 + B1_Mus2 SINE Alu 1 147 0 3 1470 1775 146 123 15 chr3 116016856 116017197 -43582586 + ORR1C1 LTR MaLR 1 378 0 3 1470 747 198 130 16 chr3 116017510 116017695 -43582088 + B3 SINE B2 5 210 -6 3 1470 186 43 0 0 chr3 116018242 116018265 -43581518 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 3 1470 467 297 14 7 chr3 116018905 116019044 -43580739 - MLT1D LTR MaLR -109 396 257 3 1470 4170 79 21 9 chr3 116019402 116019961 -43579822 + Lx2 LINE L1 6431 6996 -1 3 1470 524 254 117 92 chr3 116020138 116020240 -43579543 + L1MDa LINE L1 2304 2475 -4627 3 1470 557 268 116 62 chr3 116020240 116020499 -43579284 + B4 SINE B4 2 274 -18 3 1470 189 74 0 0 chr3 116020509 116020536 -43579247 + (CA)n Simple_repeat Simple_repeat 1 27 0 4 1470 524 251 130 99 chr3 116020536 116020825 -43578958 + L1MDa LINE L1 2476 2788 -4314 3 1470 705 146 0 0 chr3 116020858 116020981 -43578802 + (TGGA)n Simple_repeat Simple_repeat 2 124 0 4 1470 253 211 84 0 chr3 116021629 116021724 -43578059 + L1M5 LINE L1 5720 5822 -340 4 1470 280 248 133 0 chr3 116022007 116022132 -43577651 - B1F SINE Alu -1 146 6 4 1470 225 0 0 0 chr3 116023047 116023072 -43576711 + (A)n Simple_repeat Simple_repeat 1 25 0 4 1470 1019 73 87 0 chr3 116023351 116023501 -43576282 + B2_Mm2 SINE B2 1 163 -32 4 1470 266 283 0 31 chr3 116024580 116024911 -43574872 + (ACTG)n Simple_repeat Simple_repeat 1 320 0 4 1470 331 253 25 0 chr3 116025297 116025376 -43574407 + ID4_ SINE ID 3 83 0 4 1470 333 269 28 9 chr3 116025715 116025824 -43573959 + PB1D9 SINE Alu 4 114 -6 4 1470 1336 38 5 9 chr3 116025846 116026058 -43573725 + (GGAGA)n Simple_repeat Simple_repeat 1 211 0 4 1470 210 143 0 0 chr3 116026068 116026103 -43573680 + (AGGGGG)n Simple_repeat Simple_repeat 3 37 0 5 1470 310 317 0 0 chr3 116026150 116026232 -43573551 + ID4_ SINE ID 2 83 0 5 1470 442 188 10 20 chr3 116026540 116026638 -43573145 - RSINE1 SINE B4 -65 100 4 5 1470 270 0 0 0 chr3 116026946 116026976 -43572807 + (TG)n Simple_repeat Simple_repeat 2 31 0 5 1470 783 235 28 38 chr3 116028441 116028653 -43571130 - Lx7 LINE L1 -649 7047 6838 5 1470 948 266 57 55 chr3 116028653 116029113 -43570670 + Lx7 LINE L1 7057 7680 -16 5 1470 387 0 0 0 chr3 116029497 116029540 -43570243 + (CA)n Simple_repeat Simple_repeat 2 44 0 5 1470 207 100 0 0 chr3 116029692 116029722 -43570061 + (GA)n Simple_repeat Simple_repeat 1 30 0 5 1470 506 276 116 32 chr3 116030796 116031047 -43568736 + B4A SINE B4 20 291 -1 5 1470 273 253 28 0 chr3 116032052 116032150 -43567633 + L1MA8 LINE L1 5998 6103 -188 5 1470 1288 283 59 10 chr3 116033287 116033846 -43565937 + L1MA5 LINE L1 5459 6028 -128 5 1470 27 62 0 0 chr3 116034171 116034219 -43565564 + AT_rich Low_complexity Low_complexity 1 48 0 6 1470 211 235 73 12 chr3 116034400 116034482 -43565301 - MIR SINE MIR 0 262 176 6 1470 669 131 0 0 chr3 116034672 116034779 -43565004 + (GGGA)n Simple_repeat Simple_repeat 4 110 0 6 1470 245 266 59 76 chr3 116035388 116035506 -43564277 + B3 SINE B2 101 216 0 6 1470 22 0 0 0 chr3 116035516 116035538 -43564245 + AT_rich Low_complexity Low_complexity 1 22 0 6 1470 189 0 0 0 chr3 116036360 116036381 -43563402 + (A)n Simple_repeat Simple_repeat 1 21 0 6 1470 22 35 0 0 chr3 116037063 116037092 -43562691 + AT_rich Low_complexity Low_complexity 1 29 0 6 1470 4219 136 83 7 chr3 116037722 116038421 -43561362 + RMER6A LTR ERVK 1 752 -4 6 1470 997 123 193 11 chr3 116039046 116039227 -43560556 + B3 SINE B2 3 216 0 6 1470 1481 201 96 30 chr3 116040236 116040663 -43559120 - RMER13A LTR ERVK -378 482 28 6 1470 318 106 0 0 chr3 116041084 116041131 -43558652 + (GGGA)n Simple_repeat Simple_repeat 4 50 0 7 1470 960 105 0 0 chr3 116041133 116041276 -43558507 + (GAA)n Simple_repeat Simple_repeat 1 143 0 7 1470 385 255 47 9 chr3 116041276 116041383 -43558400 + PB1D7 SINE Alu 10 120 0 7 1470 1511 237 43 83 chr3 116042298 116042805 -43556978 + Lx9 LINE L1 7158 7644 0 7 1470 450 261 7 56 chr3 116043106 116043248 -43556535 - B4A SINE B4 -157 135 1 7 1470 31 0 0 0 chr3 116043252 116043283 -43556500 + AT_rich Low_complexity Low_complexity 1 31 0 7 1470 280 45 59 29 chr3 116044523 116044591 -43555192 + (TTTTTG)n Simple_repeat Simple_repeat 2 71 0 7 1470 505 304 38 26 chr3 116044824 116045088 -43554695 + MER33 DNA MER1_type 25 291 -33 7 1470 1183 68 0 0 chr3 116045144 116045292 -43554491 - B1_Mus1 SINE Alu 0 148 1 7 1470 367 331 118 39 chr3 116045438 116045693 -43554090 + B4 SINE B4 6 280 -12 7 1470 321 118 0 0 chr3 116045821 116045872 -43553911 + (TTGG)n Simple_repeat Simple_repeat 4 54 0 8 1470 456 169 46 29 chr3 116045872 116045976 -43553807 - PB1D7 SINE Alu -1 119 17 8 1470 5972 199 51 7 chr3 116046010 116047393 -43552390 + Lx7 LINE L1 5430 6889 -807 8 1470 1944 229 72 92 chr3 116047406 116048127 -43551656 + Lx7 LINE L1 6989 7695 -1 8 1470 284 312 71 14 chr3 116048898 116049038 -43550745 - Arthur1A DNA Tip100 -21 156 9 8 1470 324 0 0 0 chr3 116049278 116049314 -43550469 + (CA)n Simple_repeat Simple_repeat 2 37 0 8 1470 579 29 0 0 chr3 116049418 116049487 -43550296 + (GA)n Simple_repeat Simple_repeat 2 70 0 8 1470 383 174 12 0 chr3 116051114 116051200 -43548583 + (TAGA)n Simple_repeat Simple_repeat 1 87 0 8 1470 215 238 0 47 chr3 116051752 116051858 -43547925 + (TTATA)n Simple_repeat Simple_repeat 1 101 0 8 1470 869 243 20 10 chr3 116053059 116053263 -43546520 + B3 SINE B2 1 206 -10 8 1470 398 224 20 10 chr3 116053634 116053733 -43546050 - MER5A DNA MER1_type -12 177 78 8 1470 26 30 0 0 chr3 116053938 116053971 -43545812 + AT_rich Low_complexity Low_complexity 1 33 0 9 1470 227 346 48 36 chr3 116054342 116054507 -43545276 + MIRb SINE MIR 97 263 -5 9 1470 466 298 17 13 chr3 116054537 116054675 -43545108 - B1F SINE Alu -14 135 1 9 1470 1165 61 0 20 chr3 116054753 116054903 -43544880 + B1_Mus1 SINE Alu 2 148 0 9 1470 185 83 28 0 chr3 116054903 116054939 -43544844 + (CAAAAA)n Simple_repeat Simple_repeat 6 42 0 9 1470 24 32 0 0 chr3 116055198 116055229 -43544554 + AT_rich Low_complexity Low_complexity 1 31 0 9 1470 443 226 0 12 chr3 116055237 116055322 -43544461 - B3A SINE B2 -113 85 2 9 1470 251 318 104 27 chr3 116056396 116056616 -43543167 - Charlie4a DNA MER1_type -230 278 42 9 1470 248 231 0 0 chr3 116056709 116056761 -43543022 + B4 SINE B4 27 78 -214 9 1470 214 172 47 0 chr3 116056766 116056830 -43542953 + T-rich Low_complexity Low_complexity 3 69 0 9 1470 207 0 0 0 chr3 116056909 116056932 -43542851 + (A)n Simple_repeat Simple_repeat 1 23 0 1 1470 520 167 238 16 chr3 116056941 116057063 -43542720 + B1_Mur4 SINE Alu 2 150 0 1 1470 307 263 0 26 chr3 116057067 116057145 -43542638 + B4 SINE B4 215 290 -2 9 1470 308 331 55 8 chr3 116057758 116057886 -43541897 + MER5A DNA MER1_type 48 181 -8 1 1470 305 275 76 16 chr3 116058080 116058254 -43541529 + L1MB8 LINE L1 5932 6116 -58 1 1470 549 256 0 25 chr3 116058631 116058751 -43541032 + PB1D10 SINE Alu 1 117 0 1 1470 702 269 60 0 chr3 116058879 116059061 -43540722 + ID_B1 SINE B4 3 195 -29 1 1470 216 0 0 0 chr3 116059688 116059712 -43540071 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 1 1470 192 281 0 17 chr3 116059761 116059819 -43539964 + L2c LINE L2 3318 3374 -13 1 1470 317 102 17 0 chr3 116060776 116060835 -43538948 + (TA)n Simple_repeat Simple_repeat 2 61 0 1 1470 291 28 0 0 chr3 116061171 116061207 -43538576 + (TGAA)n Simple_repeat Simple_repeat 2 37 0 1 1470 706 122 40 8 chr3 116061214 116061338 -43538445 + B1_Mur4 SINE Alu 9 136 -14 1 1470 41 58 0 0 chr3 116061757 116061826 -43537957 + AT_rich Low_complexity Low_complexity 1 69 0 1 1470 643 265 26 7 chr3 116061942 116062094 -43537689 - RSINE1 SINE B4 -8 157 3 1 1470 286 274 148 94 chr3 116062725 116062874 -43536909 - B4 SINE B4 -133 159 3 1 1470 534 103 0 0 chr3 116063136 116063214 -43536569 + (GA)n Simple_repeat Simple_repeat 1 78 0 1 1470 1581 42 16 0 chr3 116063293 116063484 -43536299 - B2_Mm2 SINE B2 -1 194 1 1 1470 559 156 191 32 chr3 116063741 116063867 -43535916 + B1_Mur2 SINE Alu 1 146 -3 1 1470 24 0 0 0 chr3 116064429 116064453 -43535330 + AT_rich Low_complexity Low_complexity 1 24 0 1 1470 303 339 97 9 chr3 116064815 116064928 -43534855 + MER5B DNA MER1_type 23 145 -33 1 1470 386 289 9 28 chr3 116065327 116065434 -43534349 + B4 SINE B4 7 111 -181 1 1470 258 32 0 0 chr3 116065451 116065482 -43534301 + (TTG)n Simple_repeat Simple_repeat 2 32 0 1 1470 266 206 0 56 chr3 116065541 116065613 -43534170 - Lx7 LINE L1 -2 7694 7627 1 1470 493 276 16 8 chr3 116065615 116065743 -43534040 + B4 SINE B4 104 232 -60 1 1470 216 135 0 0 chr3 116065851 116065888 -43533895 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 1470 803 274 66 9 chr3 116066652 116066880 -43532903 - B4 SINE B4 -50 242 2 1 1470 999 286 59 6 chr3 116067666 116068004 -43531779 + ORR1D2 LTR MaLR 1 356 -14 1 1470 672 254 23 23 chr3 116068144 116068321 -43531462 + B3A SINE B2 6 182 -16 1 1470 429 246 51 29 chr3 116069792 116069930 -43529853 - B1F2 SINE Alu -7 142 2 1 1470 1079 230 56 49 chr3 116070963 116071038 -43528745 + B4 SINE B4 4 78 -214 1 1470 474 18 0 0 chr3 116071038 116071093 -43528690 + (CATA)n Simple_repeat Simple_repeat 1 55 0 1 1470 1079 230 56 49 chr3 116071093 116071301 -43528482 + B4 SINE B4 79 288 -4 1 1470 318 106 0 0 chr3 116071301 116071348 -43528435 + (TG)n Simple_repeat Simple_repeat 1 47 0 1 1470 210 71 0 0 chr3 116071690 116071718 -43528065 + (A)n Simple_repeat Simple_repeat 1 28 0 1 1470 213 39 0 0 chr3 116072276 116072302 -43527481 + (CCCTAA)n Simple_repeat Simple_repeat 1 26 0 1 1470 414 0 0 0 chr3 116072620 116072666 -43527117 + (TG)n Simple_repeat Simple_repeat 2 47 0 1 1470 29 0 0 0 chr3 116072852 116072881 -43526902 + AT_rich Low_complexity Low_complexity 1 29 0 1 1470 245 359 16 0 chr3 116073781 116073845 -43525938 + RSINE1 SINE B4 2 66 -99 1 1470 1067 42 7 0 chr3 116074215 116074357 -43525426 - B1_Mus1 SINE Alu 0 148 6 1 1470 257 278 20 13 chr3 116074254 116074407 -43525376 - ORR1B1-int LTR MaLR -755 754 601 1 1470 340 147 0 118 chr3 116074430 116074515 -43525268 - RSINE1 SINE B4 -37 128 54 1 1470 21 0 0 0 chr3 116076172 116076193 -43523590 + AT_rich Low_complexity Low_complexity 1 21 0 1 1470 198 0 0 0 chr3 116077202 116077224 -43522559 + (A)n Simple_repeat Simple_repeat 1 22 0 1 1470 316 308 8 62 chr3 116077612 116077740 -43522043 + RSINE1 SINE B4 45 165 0 1 1470 23 54 0 0 chr3 116077749 116077786 -43521997 + AT_rich Low_complexity Low_complexity 1 37 0 1 1470 354 333 9 9 chr3 116078227 116078342 -43521441 + PB1D10 SINE Alu 1 115 -2 1 1470 264 320 90 0 chr3 116080090 116080212 -43519571 + L2a LINE L2 3294 3426 0 1 1470 207 0 0 0 chr3 116080347 116080370 -43519413 + (CTTG)n Simple_repeat Simple_repeat 1 23 0 1 1470 677 221 8 0 chr3 116080370 116080501 -43519282 - B1_Mur1 SINE Alu -13 136 5 1 1470 220 301 17 17 chr3 116080610 116080725 -43519058 + GA-rich Low_complexity Low_complexity 3 117 0 1 1470 189 0 0 0 chr3 116081153 116081174 -43518609 + (TTGG)n Simple_repeat Simple_repeat 2 22 0 1 1470 772 176 36 7 chr3 116081206 116081343 -43518440 - B1_Mur1 SINE Alu -4 145 5 1 1470 279 299 124 33 chr3 116082089 116082210 -43517573 - RSINE1 SINE B4 -32 133 2 1 1470 578 51 13 0 chr3 116082219 116082297 -43517486 + (TAGA)n Simple_repeat Simple_repeat 4 82 0 1 1470 336 221 156 0 chr3 116082297 116082419 -43517364 - Tigger7 DNA MER2_type -112 2379 2239 1 1470 940 114 84 0 chr3 116082427 116082594 -43517189 + B2_Mm2 SINE B2 5 185 -10 1 1470 677 337 32 4 chr3 116082653 116082852 -43516931 - Tigger7 DNA MER2_type -2184 307 108 1 1470 180 0 0 0 chr3 116082852 116082872 -43516911 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 1 1470 677 337 32 4 chr3 116082872 116082919 -43516864 - Tigger7 DNA MER2_type -2384 107 54 1 1470 243 204 19 0 chr3 116083792 116083846 -43515937 + PB1D7 SINE Alu 48 102 -18 1 1470 183 132 56 19 chr3 116083887 116083941 -43515842 + GA-rich Low_complexity Low_complexity 3 58 0 1 1470 340 274 39 0 chr3 116084266 116084368 -43515415 - PB1D10 SINE Alu -9 108 3 1 1470 414 0 0 0 chr3 116084368 116084414 -43515369 + (TG)n Simple_repeat Simple_repeat 2 47 0 1 1470 276 102 0 0 chr3 116084907 116084956 -43514827 + (A)n Simple_repeat Simple_repeat 1 49 0 1 1470 680 237 96 100 chr3 116084973 116085193 -43514590 - ID_B1 SINE B4 0 224 6 1 1470 500 253 217 11 chr3 116085267 116085447 -43514336 + ID_B1 SINE B4 2 218 -6 1 1470 528 16 0 0 chr3 116085450 116085511 -43514272 + (GA)n Simple_repeat Simple_repeat 2 62 0 1 1470 468 51 0 0 chr3 116085511 116085570 -43514213 + (GGA)n Simple_repeat Simple_repeat 3 61 0 1 1470 536 216 10 0 chr3 116086614 116086716 -43513067 - PB1D7 SINE Alu -17 103 1 1 1470 180 176 0 0 chr3 116086739 116086773 -43513010 + (TTG)n Simple_repeat Simple_repeat 2 35 0 1 1470 312 211 102 37 chr3 116086805 116086913 -43512870 - RSINE1 SINE B4 -40 125 11 1 1470 439 295 0 0 chr3 116087818 116087930 -43511853 + Lx9 LINE L1 7065 7176 -468 1 1470 258 250 175 0 chr3 116088128 116088208 -43511575 + RSINE1 SINE B4 45 138 -27 1 1470 966 121 0 0 chr3 116088214 116088380 -43511403 + (CA)n Simple_repeat Simple_repeat 1 166 0 1 1470 24 0 0 0 chr3 116088380 116088404 -43511379 + AT_rich Low_complexity Low_complexity 1 24 0 1 1470 186 43 0 0 chr3 116089189 116089212 -43510571 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1 1470 433 270 25 34 chr3 116090148 116090267 -43509516 - B1F SINE Alu -22 127 10 1 1470 930 169 63 91 chr3 116090523 116090744 -43509039 - B3 SINE B2 -1 215 1 1 1470 337 274 58 66 chr3 116091230 116091367 -43508416 + ID_B1 SINE B4 2 137 -87 1 1470 412 263 68 0 chr3 116091359 116091477 -43508306 + ID_B1 SINE B4 86 211 -13 1 1470 282 304 77 51 chr3 116092764 116092920 -43506863 - MIRc SINE MIR -16 252 93 1 1470 647 165 53 30 chr3 116092983 116093114 -43506669 + B1_Mur4 SINE Alu 4 137 -13 1 1470 657 38 0 0 chr3 116093115 116093195 -43506588 + (GA)n Simple_repeat Simple_repeat 1 80 0 1 1470 223 167 16 32 chr3 116093802 116093864 -43505919 + GA-rich Low_complexity Low_complexity 1 61 0 1 1470 316 310 60 27 chr3 116093866 116094015 -43505768 + HAL1-3A_ME LINE L1 2284 2437 -421 1 1470 385 317 50 14 chr3 116095378 116095519 -43504264 + B1F SINE Alu 3 148 -1 1 1470 288 130 0 0 chr3 116095529 116095575 -43504208 + (ATG)n Simple_repeat Simple_repeat 1 46 0 1 1470 1345 34 0 11 chr3 116096196 116096373 -43503410 + (TATATG)n Simple_repeat Simple_repeat 4 178 0 1 1470 506 163 82 0 chr3 116097521 116097619 -43502164 - B1_Mur1 SINE Alu -2 147 42 1 1470 246 120 0 91 chr3 116097572 116097627 -43502156 - 4.5SRNA scRNA scRNA -11 83 34 1 1470 507 309 36 64 chr3 116097639 116097919 -43501864 - B4A SINE B4 -20 272 1 1 1470 338 275 18 27 chr3 116098592 116098704 -43501079 + MTEa LTR MaLR 108 218 -161 1 1470 324 188 0 0 chr3 116098725 116098794 -43500989 + CT-rich Low_complexity Low_complexity 2 70 0 1 1470 777 98 40 17 chr3 116098806 116098982 -43500801 + CT-rich Low_complexity Low_complexity 1 180 0 1 1470 195 257 186 0 chr3 116100028 116100098 -43499685 - MER5A DNA MER1_type -35 154 72 1 1470 382 203 70 106 chr3 116100669 116100797 -43498986 - B1_Mur4 SINE Alu -23 126 1 1 1470 220 210 0 114 chr3 116100735 116100805 -43498978 - ID_B1 SINE B4 -84 140 79 1 1470 204 67 0 0 chr3 116100811 116100841 -43498942 + (TTGG)n Simple_repeat Simple_repeat 2 31 0 1 1470 225 283 75 11 chr3 116102322 116102415 -43497368 + ID_B1 SINE B4 118 216 -8 1 1470 180 0 0 0 chr3 116103037 116103057 -43496726 + (T)n Simple_repeat Simple_repeat 1 20 0 1 1470 21 36 0 0 chr3 116103086 116103114 -43496669 + AT_rich Low_complexity Low_complexity 1 28 0 1 1470 35 0 0 0 chr3 116104073 116104108 -43495675 + AT_rich Low_complexity Low_complexity 1 35 0 1 1470 582 236 19 51 chr3 116104183 116104325 -43495458 + RSINE1 SINE B4 9 146 -19 1 1470 423 98 0 0 chr3 116104325 116104386 -43495397 + (CA)n Simple_repeat Simple_repeat 1 61 0 1 1470 582 236 19 51 chr3 116104386 116104399 -43495384 + RSINE1 SINE B4 147 159 -6 1 1470 773 180 28 14 chr3 116105144 116105285 -43494498 - B1_Mur3 SINE Alu -6 143 1 1 1470 923 282 27 27 chr3 116105846 116106138 -43493645 + B4A SINE B4 1 292 0 1 1470 189 0 0 0 chr3 116106145 116106166 -43493617 + (CA)n Simple_repeat Simple_repeat 2 22 0 2 1470 225 65 0 0 chr3 116106166 116106197 -43493586 + (GA)n Simple_repeat Simple_repeat 2 32 0 2 1470 233 271 57 0 chr3 116109481 116109551 -43490232 + ID SINE ID 2 75 -149 2 1470 663 264 135 0 chr3 116109802 116109980 -43489803 + B3 SINE B2 2 203 -13 2 1470 444 19 0 0 chr3 116109983 116110036 -43489747 + (TA)n Simple_repeat Simple_repeat 2 54 0 2 1470 642 181 155 0 chr3 116110427 116110543 -43489240 + B1_Mur4 SINE Alu 1 134 -16 2 1470 234 174 0 0 chr3 116110547 116110593 -43489190 + GA-rich Low_complexity Low_complexity 3 48 0 2 1470 822 129 0 0 chr3 116111587 116111750 -43488033 + (TG)n Simple_repeat Simple_repeat 2 164 0 2 1470 476 236 278 33 chr3 116113255 116113435 -43486348 + ID_B1 SINE B4 1 224 0 2 1470 387 259 207 23 chr3 116113747 116113921 -43485862 + B3 SINE B2 1 206 -10 2 1470 751 241 156 0 chr3 116114512 116114724 -43485059 + B4A SINE B4 5 249 -43 2 1470 369 17 34 17 chr3 116114744 116114803 -43484980 + (CA)n Simple_repeat Simple_repeat 1 60 0 2 1470 351 256 13 0 chr3 116115364 116115442 -43484341 + ID4 SINE ID 3 81 -2 2 1470 217 0 61 0 chr3 116115547 116115580 -43484203 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 2 1470 357 303 144 27 chr3 116115748 116115894 -43483889 + RSINE1 SINE B4 2 164 -1 2 1470 439 231 115 0 chr3 116115922 116116026 -43483757 - PB1D7 SINE Alu -3 117 2 2 1470 504 105 0 0 chr3 116116781 116116857 -43482926 + (TC)n Simple_repeat Simple_repeat 1 76 0 2 1470 709 234 0 0 chr3 116117675 116117820 -43481963 + B1F SINE Alu 5 149 0 2 1470 286 286 26 13 chr3 116117841 116117919 -43481864 + ID4 SINE ID 2 80 -3 2 1470 1883 250 88 12 chr3 116118098 116118612 -43481171 + Lx8 LINE L1 6575 7127 -346 2 1470 433 253 6 78 chr3 116118623 116118662 -43481121 + Lx8 LINE L1 7303 7340 -133 2 1470 444 104 0 0 chr3 116118662 116118729 -43481054 + (CAGA)n Simple_repeat Simple_repeat 2 68 0 2 1470 433 253 6 78 chr3 116118729 116118869 -43480914 + Lx8 LINE L1 7341 7469 -4 2 1470 831 72 0 0 chr3 116118925 116119036 -43480747 + (TTGG)n Simple_repeat Simple_repeat 3 113 0 2 1470 517 209 250 0 chr3 116119037 116119209 -43480574 - ID_B1 SINE B4 -8 216 2 2 1470 376 185 12 12 chr3 116119210 116119292 -43480491 - PB1D10 SINE Alu 0 117 36 2 1470 362 259 0 24 chr3 116119333 116119416 -43480367 - ID4_ SINE ID 0 83 3 2 1470 3020 133 198 25 chr3 116119434 116120065 -43479718 + RMER6A LTR ERVK 1 740 -16 2 1470 24 0 0 0 chr3 116120065 116120089 -43479694 + AT_rich Low_complexity Low_complexity 1 24 0 2 1470 482 139 12 0 chr3 116120634 116120720 -43479063 + CT-rich Low_complexity Low_complexity 2 88 0 2 1470 560 167 39 0 chr3 116120723 116120825 -43478958 - B1_Mus1 SINE Alu -21 127 22 2 1470 293 271 36 127 chr3 116120745 116120910 -43478873 - MT2B LTR ERVL -343 258 109 2 1470 582 236 0 52 chr3 116120913 116121047 -43478736 + B1_Mur1 SINE Alu 4 130 -19 2 1470 773 176 14 14 chr3 116121098 116121242 -43478541 + B1_Mur2 SINE Alu 5 148 -1 2 1470 828 162 0 0 chr3 116121242 116121390 -43478393 + GA-rich Low_complexity Low_complexity 1 148 0 2 1470 658 86 8 8 chr3 116121849 116121966 -43477817 + (TTCC)n Simple_repeat Simple_repeat 2 118 0 2 1470 849 145 13 40 chr3 116122105 116122256 -43477527 + B1_Mm SINE Alu 1 147 0 2 1470 279 0 0 0 chr3 116122595 116122626 -43477157 + (T)n Simple_repeat Simple_repeat 1 31 0 2 1470 261 310 35 0 chr3 116122644 116122731 -43477052 + MIR SINE MIR 31 120 -142 2 1470 439 200 73 100 chr3 116123219 116123260 -43476523 + MT2B LTR ERVL 119 155 -446 2 1470 900 41 25 0 chr3 116123260 116123381 -43476402 + B1_Mm SINE Alu 1 124 -23 2 1470 324 292 65 9 chr3 116123516 116123623 -43476160 - B1F SINE Alu -34 115 3 2 1470 507 252 7 43 chr3 116123639 116123780 -43476003 - B1_Mur1 SINE Alu -13 136 1 2 1470 180 0 0 0 chr3 116124917 116124937 -43474846 + (G)n Simple_repeat Simple_repeat 1 20 0 2 1470 207 100 0 0 chr3 116126928 116126958 -43472825 + (TCC)n Simple_repeat Simple_repeat 2 31 0 2 1470 300 143 0 0 chr3 116127393 116127449 -43472334 + (CA)n Simple_repeat Simple_repeat 1 56 0 2 1470 317 241 45 11 chr3 116127948 116128036 -43471747 - MamSINE1 SINE tRNA -6 284 194 2 1470 876 170 0 0 chr3 116128473 116128614 -43471169 + B1_Mus1 SINE Alu 1 141 -7 2 1470 325 231 77 0 chr3 116128948 116129039 -43470744 - RSINE1 SINE B4 -63 102 5 2 1470 367 206 10 42 chr3 116129050 116129146 -43470637 - ID_B1 SINE B4 -1 223 131 2 1470 251 274 192 8 chr3 116129052 116129177 -43470606 - B1F2 SINE Alu 0 149 2 2 1470 474 249 38 96 chr3 116129392 116129601 -43470182 + B3A SINE B2 1 197 -1 2 183 745 126 22 7 chr3 116129784 116129920 -43469863 - B1_Mur3 SINE Alu 0 149 12 2 1471 482 258 31 24 chr3 116131360 116131487 -43468296 + B3A SINE B2 6 133 -65 2 1471 315 150 0 0 chr3 116131488 116131548 -43468235 + (TCTCCC)n Simple_repeat Simple_repeat 5 64 0 2 1471 437 62 15 0 chr3 116131915 116131980 -43467803 + (CA)n Simple_repeat Simple_repeat 2 67 0 2 1471 222 255 176 0 chr3 116132148 116132250 -43467533 + PB1D7 SINE Alu 1 120 0 2 1471 507 291 0 30 chr3 116132265 116132396 -43467387 + RSINE1 SINE B4 39 165 0 2 1471 378 296 48 18 chr3 116132647 116132794 -43466989 + B1F SINE Alu 1 145 -2 2 1471 3428 30 5 0 chr3 116132825 116133219 -43466564 - MTA_Mm LTR MaLR 0 396 1 2 1471 503 293 40 20 chr3 116133402 116133597 -43466186 + ID_B1 SINE B4 80 277 -15 2 1471 291 331 118 26 chr3 116134539 116134579 -43465204 + B4 SINE B4 39 92 -200 2 1471 737 167 24 0 chr3 116134579 116134705 -43465078 + B1_Mur4 SINE Alu 2 130 -20 2 1471 308 287 75 30 chr3 116134847 116134980 -43464803 - L2a LINE L2 -3 3423 3285 2 1471 361 230 0 0 chr3 116135199 116135273 -43464510 - B1_Mus2 SINE Alu -72 75 2 2 1471 234 0 0 0 chr3 116135424 116135450 -43464333 + (TTAA)n Simple_repeat Simple_repeat 4 29 0 2 1471 189 0 0 0 chr3 116135465 116135486 -43464297 + (A)n Simple_repeat Simple_repeat 1 21 0 2 1471 727 218 94 11 chr3 116135493 116135674 -43464109 + B3A SINE B2 2 197 -1 2 1471 288 102 0 0 chr3 116136031 116136080 -43463703 + (TCTG)n Simple_repeat Simple_repeat 2 50 0 2 1471 225 21 39 78 chr3 116137125 116137176 -43462607 + (TCTCTG)n Simple_repeat Simple_repeat 6 54 0 2 1471 409 334 67 42 chr3 116137204 116137477 -43462306 - B4 SINE B4 -14 278 31 2 1471 411 56 0 0 chr3 116138039 116138093 -43461690 + (GA)n Simple_repeat Simple_repeat 1 54 0 2 1471 37 23 0 0 chr3 116138106 116138150 -43461633 + AT_rich Low_complexity Low_complexity 1 44 0 2 1471 359 225 25 0 chr3 116138293 116138373 -43461410 + ID4 SINE ID 2 83 0 2 1471 484 279 24 16 chr3 116138410 116138534 -43461249 - B1F SINE Alu -3 146 22 2 1471 324 267 196 22 chr3 116138827 116139011 -43460772 - B3 SINE B2 0 216 1 2 1471 253 244 70 63 chr3 116139299 116139405 -43460378 + B1F1 SINE Alu 5 116 -1 2 1471 411 21 0 0 chr3 116139423 116139471 -43460312 + (GA)n Simple_repeat Simple_repeat 1 48 0 2 1471 264 333 26 9 chr3 116139868 116140068 -43459715 + MER72 LTR ERV1 246 473 -249 2 1471 381 303 20 40 chr3 116140125 116140273 -43459510 - RSINE1 SINE B4 -6 159 15 2 1471 1039 348 91 40 chr3 116141056 116141763 -43458020 - MER21B LTR ERV1 -104 759 17 2 1471 376 304 98 90 chr3 116142088 116142505 -43457278 - LTR16C LTR ERVL -4 534 65 2 1471 630 255 109 56 chr3 116142652 116142918 -43456865 + B4 SINE B4 3 282 -10 2 1471 288 130 0 0 chr3 116142934 116142980 -43456803 + (TG)n Simple_repeat Simple_repeat 2 47 0 2 1471 333 344 25 0 chr3 116143351 116143514 -43456269 + L2a LINE L2 2481 2647 -772 2 1471 339 265 84 70 chr3 116143514 116143531 -43456252 + B1F SINE Alu 1 93 -56 2 1471 486 197 8 79 chr3 116143531 116143604 -43456179 + ID_B1 SINE B4 104 171 -53 2 1471 647 225 141 151 chr3 116143604 116143981 -43455802 - ORR1D1 LTR MaLR -1 373 1 2 1471 339 265 84 70 chr3 116143981 116144032 -43455751 + B1F SINE Alu 94 144 -5 2 1471 189 323 0 0 chr3 116144179 116144241 -43455542 + L2a LINE L2 2847 2908 -511 2 1471 1164 62 0 0 chr3 116144260 116144406 -43455377 + B1_Mm SINE Alu 2 147 0 2 1471 505 299 89 21 chr3 116144442 116144814 -43454969 + L2a LINE L2 2979 3375 -51 2 1471 365 338 7 14 chr3 116145048 116145186 -43454597 + ID_B1 SINE B4 88 224 0 2 1471 1110 152 108 72 chr3 116145752 116146001 -43453782 - RMER1B Other Other 0 1066 809 2 1471 475 290 88 53 chr3 116145997 116146223 -43453560 - RMER1A Other Other -670 360 127 2 1471 1241 249 49 46 chr3 116146146 116146632 -43453151 + RMER1A Other Other 1 402 -628 2 1471 342 0 0 0 chr3 116146829 116146867 -43452916 + (CA)n Simple_repeat Simple_repeat 2 39 0 2 1471 384 323 75 31 chr3 116147023 116147250 -43452533 - L2a LINE L2 -260 3166 2930 2 1471 758 272 25 15 chr3 116147814 116148012 -43451771 + ID_B1 SINE B4 8 207 -17 2 1471 468 306 57 47 chr3 116148169 116148361 -43451422 + B4A SINE B4 2 195 -97 2 1471 213 65 0 0 chr3 116148381 116148412 -43451371 + (CA)n Simple_repeat Simple_repeat 2 32 0 2 1471 1041 280 118 6 chr3 116148602 116148965 -43450818 + Lx8 LINE L1 7063 7466 -7 2 1471 387 0 0 0 chr3 116149617 116149660 -43450123 + (TC)n Simple_repeat Simple_repeat 2 44 0 2 1471 353 22 0 21 chr3 116149660 116149706 -43450077 + (TG)n Simple_repeat Simple_repeat 1 46 0 2 1471 488 108 30 23 chr3 116149706 116149839 -43449944 + (CA)n Simple_repeat Simple_repeat 2 135 0 2 1471 365 95 16 0 chr3 116150680 116150743 -43449040 + (CA)n Simple_repeat Simple_repeat 1 64 0 3 1471 378 0 0 0 chr3 116150743 116150784 -43448999 + (GA)n Simple_repeat Simple_repeat 2 43 0 3 1471 352 212 0 0 chr3 116151196 116151262 -43448521 - ID4 SINE ID -16 67 2 3 1471 707 228 0 80 chr3 116151304 116151480 -43448303 - U1 snRNA snRNA -1 164 3 3 1471 272 220 0 0 chr3 116151735 116151785 -43447998 - ID4_ SINE ID -32 51 2 3 1471 283 324 110 65 chr3 116151795 116151950 -43447833 - MER20 DNA MER1_type -21 198 37 3 1471 1289 244 94 19 chr3 116152294 116152666 -43447117 + MTD LTR MaLR 20 419 0 3 1471 634 115 0 34 chr3 116152701 116152818 -43446965 + (TATG)n Simple_repeat Simple_repeat 2 114 0 3 1471 306 0 0 0 chr3 116152818 116152852 -43446931 + (TGGA)n Simple_repeat Simple_repeat 4 37 0 3 1471 186 296 82 22 chr3 116153937 116154072 -43445711 + L4 LINE RTE 1883 2025 -4 3 1471 303 28 0 0 chr3 116154116 116154152 -43445631 + (GAAAA)n Simple_repeat Simple_repeat 2 37 0 3 1471 1216 54 0 0 chr3 116154201 116154348 -43445435 + B1_Mm SINE Alu 1 147 0 3 1471 323 57 71 0 chr3 116154355 116154425 -43445358 + (CAAA)n Simple_repeat Simple_repeat 2 76 0 3 1471 207 0 0 0 chr3 116154535 116154558 -43445225 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 3 1471 638 282 6 34 chr3 116155101 116155201 -43444582 + B3A SINE B2 1 96 -102 3 1471 2344 148 23 3 chr3 116155201 116155587 -43444196 + ORR1B1 LTR MaLR 1 394 0 3 1471 638 256 5 109 chr3 116155587 116155688 -43444095 + B3A SINE B2 97 181 -35 3 1471 767 179 17 40 chr3 116155735 116155910 -43443873 + B2_Mm1t SINE B2 1 171 -22 3 1471 500 260 134 34 chr3 116156641 116156820 -43442963 - B3A SINE B2 0 198 2 3 1471 274 218 111 127 chr3 116157047 116157173 -43442610 - MamGypLTR3 LTR Gypsy -651 188 65 3 1471 778 105 20 0 chr3 116157197 116157350 -43442433 + RMER17B LTR ERVK 308 463 -495 3 1471 323 236 74 91 chr3 116157989 116158110 -43441673 - PB1D7 SINE Alu 0 120 2 3 1471 404 222 82 13 chr3 116158245 116158396 -43441387 + B3A SINE B2 1 170 -46 3 1471 503 184 0 0 chr3 116158646 116158744 -43441039 - L1M2 LINE L1 -2390 3753 3656 3 1471 17209 80 37 7 chr3 116158747 116161449 -43438334 - L1VL2 LINE L1 -283 3332 527 3 1471 1402 154 5 13 chr3 116161426 116161650 -43438133 - L1VL4 LINE L1 -5871 431 210 3 1471 704 255 135 0 chr3 116161654 116161846 -43437937 - ID_B1 SINE B4 -5 219 2 3 1471 678 246 98 16 chr3 116162021 116162215 -43437568 - B3 SINE B2 -5 211 2 3 1471 379 174 267 0 chr3 116162245 116162331 -43437452 + B1_Mus1 SINE Alu 3 111 -37 3 1471 31 76 0 0 chr3 116162339 116162405 -43437378 + AT_rich Low_complexity Low_complexity 1 66 0 3 1471 213 159 31 16 chr3 116162430 116162494 -43437289 + GA-rich Low_complexity Low_complexity 2 66 0 3 1471 466 204 33 74 chr3 116163045 116163158 -43436625 + PB1D9 SINE Alu 3 111 -9 3 1471 363 23 0 0 chr3 116163158 116163202 -43436581 + (CA)n Simple_repeat Simple_repeat 2 45 0 3 1471 441 280 118 7 chr3 116163330 116163474 -43436309 + RSINE1 SINE B4 2 161 -4 3 1471 522 296 143 0 chr3 116163557 116163753 -43436030 + ID_B1 SINE B4 1 224 0 3 1471 2754 115 19 5 chr3 116164247 116164659 -43435124 - MTC LTR MaLR -3 418 1 3 1471 246 192 39 0 chr3 116164703 116164755 -43435028 + ID4_ SINE ID 2 55 -28 3 1471 632 197 40 40 chr3 116165205 116165353 -43434430 + B1_Mur1 SINE Alu 2 149 0 3 1471 3582 54 2 5 chr3 116165401 116165845 -43433938 - L1_Mus2 LINE L1 0 6566 6124 3 1471 230 288 18 0 chr3 116165864 116165949 -43433834 - MTC LTR MaLR 0 421 333 3 1471 223 245 34 0 chr3 116166040 116166106 -43433677 - BC1_Mm scRNA scRNA -73 79 12 3 1471 219 200 0 0 chr3 116166434 116166474 -43433309 + PB1D9 SINE Alu 73 112 -8 3 1471 680 293 73 85 chr3 116166476 116166886 -43432897 + L1M2 LINE L1 5374 5778 -519 3 1471 690 251 6 24 chr3 116166887 116167054 -43432729 + RSINE1 SINE B4 2 165 0 3 1471 288 277 64 0 chr3 116167100 116167194 -43432589 + L1M2 LINE L1 5769 5868 -432 3 1471 580 128 125 25 chr3 116167475 116167595 -43432188 + B1_Mur3 SINE Alu 5 136 -13 3 1471 243 0 0 0 chr3 116167599 116167626 -43432157 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3 1471 443 222 0 11 chr3 116167658 116167749 -43432034 + ID_B1 SINE B4 86 175 -49 3 1471 366 228 169 23 chr3 116167749 116167784 -43431999 + B1F SINE Alu 5 149 0 3 1471 436 306 87 5 chr3 116167858 116168042 -43431741 + L1MC LINE L1 5491 5689 -644 3 1471 391 297 116 63 chr3 116168200 116168581 -43431202 - L1MEc LINE L1 -4324 2076 1676 3 1471 273 314 130 48 chr3 116168739 116169070 -43430713 - L1MEc LINE L1 -5002 1398 1041 3 1471 242 29 0 28 chr3 116169095 116169131 -43430652 + (TTTTA)n Simple_repeat Simple_repeat 2 36 0 3 1471 259 219 78 0 chr3 116169157 116169221 -43430562 - ID_B1 SINE B4 -63 161 93 3 1471 1451 153 97 3 chr3 116169221 116169530 -43430253 + ORR1B1 LTR MaLR 1 338 -56 3 1471 501 271 46 8 chr3 116170082 116170212 -43429571 + RMER1A Other Other 25 159 -871 3 1471 201 293 0 17 chr3 116170244 116170303 -43429480 + C-rich Low_complexity Low_complexity 3 60 0 3 1471 1110 239 12 44 chr3 116170306 116170556 -43429227 + RMER1A Other Other 2 243 -787 3 1471 3594 246 107 8 chr3 116170558 116171469 -43428314 + RMER1A Other Other 5 1005 -25 3 1471 396 90 45 0 chr3 116171478 116171545 -43428238 + ORR1B2 LTR MaLR 296 365 -2 3 1471 2422 82 17 17 chr3 116171634 116171983 -43427800 - Lx LINE L1 -6 6648 6300 3 1471 233 200 40 54 chr3 116172172 116172220 -43427563 + (CTTG)n Simple_repeat Simple_repeat 1 50 0 3 1471 1434 83 5 5 chr3 116172220 116172413 -43427370 - B2_Mm2 SINE B2 -2 193 1 3 1471 233 200 40 54 chr3 116172413 116172438 -43427345 + (CTTG)n Simple_repeat Simple_repeat 2 24 0 3 1471 283 216 86 43 chr3 116172490 116172606 -43427177 - L1MEc LINE L1 -5567 833 713 3 1471 289 183 0 16 chr3 116172661 116172722 -43427061 - RMER6B LTR ERVK -31 430 371 3 1471 357 24 0 0 chr3 116172975 116173017 -43426766 + (GA)n Simple_repeat Simple_repeat 1 42 0 3 1471 254 125 0 20 chr3 116173124 116173173 -43426610 + (CCCTAA)n Simple_repeat Simple_repeat 3 50 0 3 1471 718 60 259 0 chr3 116173252 116173368 -43426415 - B1_Mm SINE Alu 0 147 2 3 1471 309 254 114 106 chr3 116173620 116173893 -43425890 - L1MEc LINE L1 -5792 608 334 3 1471 5001 201 160 20 chr3 116173935 116175474 -43424309 + Lx7 LINE L1 5937 7690 -6 3 1471 264 349 13 0 chr3 116175477 116175683 -43424100 + (TATATG)n Simple_repeat Simple_repeat 1 208 0 3 1471 326 357 0 0 chr3 116175691 116175859 -43423924 + (CATATA)n Simple_repeat Simple_repeat 1 168 0 3 1471 286 308 34 17 chr3 116175955 116176074 -43423709 - L1MEc LINE L1 -6211 189 69 3 1471 1091 98 6 0 chr3 116176120 116176283 -43423500 + (TG)n Simple_repeat Simple_repeat 1 164 0 3 1471 301 294 61 75 chr3 116176390 116176537 -43423246 - B4A SINE B4 -147 145 1 3 1471 473 271 51 36 chr3 116176649 116176727 -43423056 - MTD LTR MaLR 0 419 323 3 1471 1331 105 11 5 chr3 116176727 116176918 -43422865 - B2_Mm1t SINE B2 -1 192 1 3 1471 766 255 88 51 chr3 116176918 116177201 -43422582 - MTD LTR MaLR -74 322 1 3 1471 648 0 0 0 chr3 116177250 116177322 -43422461 + (TG)n Simple_repeat Simple_repeat 2 73 0 3 1471 426 310 48 27 chr3 116177322 116177468 -43422315 - RSINE1 SINE B4 -6 159 11 3 1471 180 0 0 0 chr3 116177932 116177952 -43421831 + (A)n Simple_repeat Simple_repeat 1 20 0 3 1471 843 132 29 6 chr3 116178321 116178496 -43421287 + GA-rich Low_complexity Low_complexity 2 180 0 3 1471 270 104 0 77 chr3 116178496 116178548 -43421235 + polypurine Low_complexity Low_complexity 1 48 0 3 1471 419 213 0 29 chr3 116178551 116178691 -43421092 + G-rich Low_complexity Low_complexity 5 140 0 3 1471 668 80 35 0 chr3 116179096 116179209 -43420574 + (TG)n Simple_repeat Simple_repeat 2 118 0 3 1471 403 273 133 28 chr3 116179228 116179439 -43420344 - B4A SINE B4 -55 237 5 3 1471 302 250 14 0 chr3 116180233 116180305 -43419478 + RSINE1 SINE B4 1 73 -92 3 1471 439 308 16 8 chr3 116180843 116180958 -43418825 + RSINE1 SINE B4 23 139 -26 3 1471 276 53 0 0 chr3 116180958 116180996 -43418787 + (CA)n Simple_repeat Simple_repeat 1 38 0 3 1471 580 269 7 0 chr3 116181300 116181441 -43418342 + ID_B1 SINE B4 81 222 -2 3 1471 452 243 54 0 chr3 116181755 116181866 -43417917 + PB1D10 SINE Alu 1 117 0 3 1471 1960 119 77 0 chr3 116181940 116182250 -43417533 + Lx4A LINE L1 6725 7058 0 3 1471 712 329 35 53 chr3 116182443 116182783 -43417000 + MLT1F2 LTR MaLR 223 556 -4 3 1471 668 320 45 21 chr3 116183180 116183532 -43416251 + ERVL-E-int LTR ERVL 4810 5234 -480 3 1471 590 265 74 0 chr3 116183681 116183843 -43415940 + Lx8 LINE L1 6289 6462 -1011 3 1471 1434 234 94 75 chr3 116183835 116184089 -43415694 + Lx8 LINE L1 6879 7143 -330 3 1471 315 0 0 0 chr3 116184089 116184124 -43415659 + (GGGA)n Simple_repeat Simple_repeat 4 38 0 3 1471 1434 234 94 75 chr3 116184124 116184441 -43415342 + Lx8 LINE L1 7144 7461 -12 3 1471 1515 58 16 0 chr3 116184442 116184632 -43415151 - B2_Mm1t SINE B2 0 193 1 3 1471 1231 258 41 27 chr3 116184904 116185196 -43414587 - MTEa LTR MaLR -7 372 78 3 1471 2303 163 58 0 chr3 116185196 116185594 -43414189 - MTC LTR MaLR 0 421 1 3 1471 1231 258 41 27 chr3 116185594 116185668 -43414115 - MTEa LTR MaLR -302 77 1 3 1471 369 0 0 0 chr3 116186576 116186617 -43413166 + (TG)n Simple_repeat Simple_repeat 2 42 0 3 1471 1280 222 63 84 chr3 116186680 116187094 -43412689 - MTD LTR MaLR -14 405 1 3 1471 734 164 47 8 chr3 116187476 116187605 -43412178 + B1_Mur2 SINE Alu 5 138 -11 3 1471 369 0 0 0 chr3 116187605 116187646 -43412137 + (CA)n Simple_repeat Simple_repeat 2 42 0 3 1471 310 289 9 19 chr3 116187956 116188056 -43411727 + B4 SINE B4 1 100 -192 3 1471 421 231 198 64 chr3 116188056 116188182 -43411601 + B3A SINE B2 5 154 -44 3 1471 1050 135 0 0 chr3 116188182 116188360 -43411423 + (CA)n Simple_repeat Simple_repeat 1 178 0 3 1471 421 231 198 64 chr3 116188360 116188390 -43411393 + B3A SINE B2 155 182 -16 3 1471 270 206 0 0 chr3 116188398 116188466 -43411317 + (CA)n Simple_repeat Simple_repeat 1 68 0 4 1471 278 317 58 115 chr3 116188614 116188892 -43410891 - Charlie2b DNA MER1_type -2446 336 75 4 1471 6046 92 2 22 chr3 116189031 116189900 -43409883 - L1_Mus3 LINE L1 -4 6634 5783 4 1471 1087 91 14 0 chr3 116189914 116190057 -43409726 - B1_Mus2 SINE Alu -2 145 1 4 1471 2700 91 0 0 chr3 116190076 116190438 -43409345 + Lx6 LINE L1 5273 5631 -1829 4 1471 392 274 113 0 chr3 116190442 116190566 -43409217 + ID_B1 SINE B4 80 217 -7 4 1471 1044 146 66 28 chr3 116190956 116191168 -43408615 - RMER6B LTR ERVK -239 222 3 4 1471 1039 306 34 22 chr3 116191445 116191803 -43407980 - Tigger7 DNA MER2_type -2118 373 12 4 1471 470 255 0 28 chr3 116193330 116193439 -43406344 + PB1D10 SINE Alu 1 106 -11 4 1471 1130 214 5 0 chr3 116193682 116193892 -43405891 + B3 SINE B2 1 211 -5 4 1471 1271 99 22 0 chr3 116193916 116194097 -43405686 + B2_Mm2 SINE B2 1 185 -10 4 1471 195 42 0 0 chr3 116194174 116194198 -43405585 + (CAA)n Simple_repeat Simple_repeat 2 25 0 4 1471 363 282 16 41 chr3 116194470 116194592 -43405191 - PB1 SINE Alu -8 119 1 4 1471 319 111 15 60 chr3 116194628 116194695 -43405088 - B1_Mus1 SINE Alu -79 69 6 4 1471 240 176 13 63 chr3 116194640 116194700 -43405083 - B4 SINE B4 -148 144 88 4 1471 594 28 0 0 chr3 116194700 116194772 -43405011 + (TG)n Simple_repeat Simple_repeat 2 73 0 4 1471 240 176 13 63 chr3 116194772 116194790 -43404993 - B4 SINE B4 -205 87 70 4 1471 281 220 80 0 chr3 116194798 116194898 -43404885 + Lx7 LINE L1 7585 7692 -4 4 1471 241 304 14 0 chr3 116194981 116195050 -43404733 - B1_Mur1 SINE Alu -16 133 64 4 1471 308 269 98 15 chr3 116195180 116195312 -43404471 + B1F SINE Alu 7 149 0 4 1471 195 129 0 0 chr3 116195511 116195542 -43404241 + (TTA)n Simple_repeat Simple_repeat 2 32 0 4 1471 242 217 0 0 chr3 116196237 116196297 -43403486 + T-rich Low_complexity Low_complexity 1 60 0 4 1471 1111 96 0 7 chr3 116196297 116196444 -43403339 - B1_Mus2 SINE Alu 0 147 2 4 1471 392 305 29 0 chr3 116197164 116197269 -43402514 + PB1D7 SINE Alu 11 118 -2 4 1471 229 289 26 0 chr3 116197467 116197543 -43402240 + B2_Mm1t SINE B2 1 78 -115 4 1471 948 202 31 0 chr3 116197716 116197909 -43401874 + B3 SINE B2 3 201 -15 4 1471 1120 118 30 56 chr3 116198308 116198505 -43401278 + B2_Mm2 SINE B2 1 192 -3 4 1471 437 146 135 0 chr3 116199060 116199156 -43400627 - B1_Mus2 SINE Alu -22 125 17 4 1471 535 275 6 70 chr3 116199351 116199523 -43400260 + B3A SINE B2 38 198 0 4 1471 1049 80 7 0 chr3 116199543 116199680 -43400103 + B1_Mus2 SINE Alu 1 138 -9 4 1471 243 0 0 0 chr3 116199680 116199707 -43400076 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 4 1471 1148 99 64 0 chr3 116199717 116199889 -43399894 + B2_Mm1a SINE B2 3 185 -8 4 1471 309 311 11 11 chr3 116199925 116200016 -43399767 - MER2 DNA MER2_type -3 342 252 4 1471 319 246 15 0 chr3 116200025 116200090 -43399693 + B1F SINE Alu 13 78 -71 4 1471 23 0 0 0 chr3 116200195 116200218 -43399565 + AT_rich Low_complexity Low_complexity 1 23 0 4 1471 381 321 29 44 chr3 116200218 116200355 -43399428 - B1F1 SINE Alu -9 140 6 4 1471 958 232 14 5 chr3 116200808 116201016 -43398767 + B3 SINE B2 1 210 -6 4 1471 1078 204 24 0 chr3 116201019 116201230 -43398553 + B3 SINE B2 1 216 0 4 1471 797 177 187 32 chr3 116201279 116201466 -43398317 + B3 SINE B2 1 216 0 4 1471 40 0 0 0 chr3 116201470 116201510 -43398273 + AT_rich Low_complexity Low_complexity 1 40 0 4 1471 500 235 118 0 chr3 116201529 116201648 -43398135 + B1_Mur1 SINE Alu 12 144 -5 4 1471 462 265 36 14 chr3 116201674 116201812 -43397971 + RSINE1 SINE B4 11 151 -14 4 1471 1181 70 0 0 chr3 116201893 116202051 -43397732 + B2_Mm2 SINE B2 1 158 -37 4 1471 243 0 0 0 chr3 116202052 116202079 -43397704 + (TAAA)n Simple_repeat Simple_repeat 3 29 0 4 1471 271 341 37 112 chr3 116202100 116202341 -43397442 + ID_B1 SINE B4 2 224 0 4 1471 261 224 11 156 chr3 116202797 116202887 -43396896 + ID4_ SINE ID 3 79 -4 4 1471 238 274 27 0 chr3 116203914 116203987 -43395796 + ID4 SINE ID 2 76 -7 4 1471 904 124 59 6 chr3 116204597 116204767 -43395016 - URR1A DNA MER1_type 0 226 48 4 1471 2616 94 32 20 chr3 116204905 116205305 -43394478 + MTB_Mm LTR MaLR 1 405 -2 4 1471 860 141 0 0 chr3 116205328 116205463 -43394320 - B1_Mus2 SINE Alu 0 147 13 4 1471 215 303 39 26 chr3 116205687 116205765 -43394018 + ID4 SINE ID 2 80 -3 4 1471 198 0 0 0 chr3 116206065 116206087 -43393696 + (CCTTG)n Simple_repeat Simple_repeat 3 24 0 4 1471 587 217 28 21 chr3 116206104 116206245 -43393538 + ID_B1 SINE B4 83 224 0 4 1471 241 265 68 10 chr3 116206408 116206511 -43393272 + L1ME1 LINE L1 6060 6168 -11 4 1471 367 291 100 13 chr3 116206817 116206967 -43392816 - RSINE1 SINE B4 0 165 3 4 1471 932 109 22 0 chr3 116207687 116207824 -43391959 + B1_Mus1 SINE Alu 2 141 -7 4 1471 219 279 49 25 chr3 116208234 116208315 -43391468 + (CATG)n Simple_repeat Simple_repeat 3 85 0 4 1471 696 143 87 0 chr3 116208358 116208484 -43391299 + B1_Mur4 SINE Alu 1 137 -13 4 1471 252 392 76 0 chr3 116208496 116208654 -43391129 + MIR3 SINE MIR 30 199 -9 4 1471 215 200 15 77 chr3 116209362 116209427 -43390356 - ID4 SINE ID -12 71 11 4 1471 234 318 17 108 chr3 116209464 116209584 -43390199 + PB1D10 SINE Alu 9 117 0 4 1471 380 292 67 67 chr3 116210066 116210290 -43389493 + MLT1B LTR MaLR 10 233 -157 4 1471 768 271 29 5 chr3 116210243 116210451 -43389332 + ID_B1 SINE B4 8 220 -4 4 1471 189 0 0 0 chr3 116210642 116210663 -43389120 + (CCCG)n Simple_repeat Simple_repeat 4 24 0 4 1471 1442 70 5 21 chr3 116211805 116211996 -43387787 + B2_Mm1t SINE B2 1 188 -5 4 1471 500 241 25 31 chr3 116212268 116212420 -43387363 - B3 SINE B2 -12 186 35 4 1471 212 387 13 0 chr3 116212519 116212594 -43387189 - ID SINE ID -148 76 1 4 1471 219 157 0 0 chr3 116212783 116212834 -43386949 + (CAGA)n Simple_repeat Simple_repeat 2 52 0 4 1471 318 339 153 8 chr3 116213469 116213704 -43386079 + L1M5 LINE L1 5372 5640 -600 4 1471 396 261 9 35 chr3 116213704 116213819 -43385964 + PB1D7 SINE Alu 1 112 -8 4 1471 241 290 0 42 chr3 116213839 116213911 -43385872 + ID4_ SINE ID 2 70 -13 4 1471 224 0 0 61 chr3 116213913 116213946 -43385837 + (TCTCTG)n Simple_repeat Simple_repeat 4 34 0 4 1471 1050 82 0 0 chr3 116214351 116214486 -43385297 + B1_Mus1 SINE Alu 2 136 -12 4 1471 299 25 25 0 chr3 116214486 116214526 -43385257 + (CAAAA)n Simple_repeat Simple_repeat 3 43 0 4 1471 492 217 133 0 chr3 116214583 116214707 -43385076 - B1_Mur4 SINE Alu -10 140 1 4 1471 578 240 15 57 chr3 116215557 116215733 -43384050 - B3A SINE B2 -5 190 45 4 1471 207 300 0 0 chr3 116216386 116216436 -43383347 - L2a LINE L2 -24 3402 3353 4 1471 180 77 0 0 chr3 116217498 116217524 -43382259 + (A)n Simple_repeat Simple_repeat 1 26 0 4 1471 216 405 8 41 chr3 116218095 116218216 -43381567 + L2c LINE L2 2731 2847 -572 4 1471 291 28 0 0 chr3 116218557 116218593 -43381190 + (CA)n Simple_repeat Simple_repeat 2 37 0 4 1471 185 357 15 31 chr3 116218830 116218960 -43380823 + L2c LINE L2 3250 3377 -10 4 1471 776 196 36 0 chr3 116219016 116219154 -43380629 - B1_Mur4 SINE Alu -7 143 1 4 1471 399 157 0 0 chr3 116219819 116219889 -43379894 + GA-rich Low_complexity Low_complexity 1 70 0 4 1471 222 354 9 17 chr3 116219938 116220053 -43379730 + MIRc SINE MIR 6 119 -149 4 1471 198 0 0 0 chr3 116220274 116220296 -43379487 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 4 1471 1167 36 0 0 chr3 116220296 116220434 -43379349 - B1_Mm SINE Alu -9 138 1 4 1471 213 65 0 0 chr3 116220444 116220475 -43379308 + (T)n Simple_repeat Simple_repeat 1 31 0 4 1471 1200 55 0 7 chr3 116220475 116220623 -43379160 - B1_Mus2 SINE Alu 0 147 1 4 1471 557 248 74 104 chr3 116220904 116221201 -43378582 + B4 SINE B4 5 292 0 4 1471 1251 34 0 0 chr3 116221293 116221439 -43378344 + B1_Mm SINE Alu 1 146 -1 4 1471 204 40 0 0 chr3 116221439 116221464 -43378319 + (GAAAA)n Simple_repeat Simple_repeat 1 25 0 4 1471 384 303 58 6 chr3 116221499 116221655 -43378128 + B4A SINE B4 125 288 -4 4 1471 1162 200 5 0 chr3 116221829 116222039 -43377744 + B3 SINE B2 1 211 -5 4 1471 21 57 0 0 chr3 116222040 116222075 -43377708 + AT_rich Low_complexity Low_complexity 1 35 0 4 1471 418 322 8 17 chr3 116222166 116222286 -43377497 + PB1 SINE Alu 1 119 -8 4 1471 213 171 0 0 chr3 116222577 116222612 -43377171 + B3 SINE B2 16 50 -166 4 1471 266 150 37 12 chr3 116224092 116224124 -43375659 + (TG)n Simple_repeat Simple_repeat 1 32 0 4 1471 4382 119 49 27 chr3 116224124 116224857 -43374926 + RMER6A LTR ERVK 5 753 -3 4 1471 266 150 37 12 chr3 116224857 116224905 -43374878 + (TG)n Simple_repeat Simple_repeat 1 50 0 4 1471 375 120 163 36 chr3 116225152 116225270 -43374513 - B2_Mm2 SINE B2 0 193 47 4 1471 1105 111 0 6 chr3 116225306 116225478 -43374305 - B2_Mm2 SINE B2 -22 173 3 4 1471 276 183 0 32 chr3 116225486 116225548 -43374235 - B1_Mur4 SINE Alu -1 149 90 4 1471 182 320 128 0 chr3 116225552 116225630 -43374153 - L2b LINE L2 -16 3359 3272 5 1471 820 145 14 0 chr3 116225793 116225931 -43373852 + B1_Mur2 SINE Alu 9 148 -1 5 1471 862 152 136 0 chr3 116226497 116226681 -43373102 - B3 SINE B2 -6 210 2 5 1471 1224 68 0 0 chr3 116226760 116226907 -43372876 - B1_Mm SINE Alu 0 147 1 5 1471 693 254 20 36 chr3 116227224 116227420 -43372363 + B3A SINE B2 2 194 -4 5 1471 21 0 0 0 chr3 116227421 116227442 -43372341 + AT_rich Low_complexity Low_complexity 1 21 0 5 1471 354 306 0 0 chr3 116227455 116227553 -43372230 - RMER12 LTR ERVK -477 845 748 5 1471 348 216 35 80 chr3 116227697 116227814 -43371969 - PB1D7 SINE Alu 0 120 9 5 1471 1713 21 0 0 chr3 116228055 116228245 -43371538 - B2_Mm1a SINE B2 -2 191 2 5 1471 243 256 128 0 chr3 116228604 116228682 -43371101 + PB1 SINE Alu 29 116 -11 5 1471 251 246 16 32 chr3 116228721 116228784 -43370999 - PB1D10 SINE Alu -7 110 49 5 1471 404 213 0 0 chr3 116229164 116229257 -43370526 + PB1D7 SINE Alu 12 104 -16 5 1471 378 0 0 0 chr3 116229257 116229299 -43370484 + (GA)n Simple_repeat Simple_repeat 1 42 0 5 1471 448 220 14 90 chr3 116229309 116229485 -43370298 - L1M4b LINE L1 -3923 3085 2919 5 1471 386 243 62 0 chr3 116229582 116229716 -43370067 - L1M4b LINE L1 -4866 2468 2276 5 1471 252 0 0 0 chr3 116229732 116229760 -43370023 + (TG)n Simple_repeat Simple_repeat 2 29 0 5 1471 473 304 54 30 chr3 116229773 116229939 -43369844 - B3A SINE B2 -28 170 1 5 1471 309 281 118 5 chr3 116229985 116230196 -43369587 - L1M4b LINE L1 -5124 2210 1976 5 1471 24 0 0 0 chr3 116230204 116230228 -43369555 + AT_rich Low_complexity Low_complexity 1 24 0 5 1471 1310 111 82 9 chr3 116231762 116231981 -43367802 - Lx3_Mus LINE L1 -3 7006 6772 5 1471 5299 212 96 83 chr3 116232011 116234629 -43365154 - Lx9 LINE L1 -9 7635 4920 5 1471 264 122 0 0 chr3 116234631 116234672 -43365111 + (TCCC)n Simple_repeat Simple_repeat 4 44 0 5 1471 375 23 0 0 chr3 116234675 116234719 -43365064 + (TTTC)n Simple_repeat Simple_repeat 3 46 0 5 1471 226 333 0 0 chr3 116234732 116234807 -43364976 - ID_B1 SINE B4 -69 155 81 5 1471 277 304 45 25 chr3 116234895 116235094 -43364689 - L1M4b LINE L1 -5110 1794 1592 5 1471 763 183 23 51 chr3 116235516 116235706 -43364077 + B3 SINE B2 2 190 -5 5 1471 952 144 249 0 chr3 116235715 116235888 -43363895 + B3 SINE B2 1 216 0 5 1471 301 169 62 0 chr3 116236423 116236488 -43363295 + PB1D7 SINE Alu 30 98 -22 5 1471 777 68 246 0 chr3 116236516 116236634 -43363149 - B1_Mus1 SINE Alu 0 148 2 5 1471 252 196 0 19 chr3 116236634 116236686 -43363097 + ID_B1 SINE B4 165 215 -9 5 1471 527 102 11 0 chr3 116237243 116237331 -43362452 + (TG)n Simple_repeat Simple_repeat 1 89 0 5 1471 731 307 30 26 chr3 116237341 116237605 -43362178 - B4A SINE B4 -27 265 1 5 1471 412 293 52 26 chr3 116237912 116238105 -43361678 + B3A SINE B2 1 198 0 5 1471 802 237 87 34 chr3 116238242 116238508 -43361275 + B4 SINE B4 1 280 -12 5 1471 21 0 0 0 chr3 116239102 116239123 -43360660 + AT_rich Low_complexity Low_complexity 1 21 0 5 1471 516 236 34 0 chr3 116239161 116239294 -43360489 - B1F SINE Alu -12 137 1 5 1471 270 262 192 10 chr3 116239983 116240087 -43359696 - B1F2 SINE Alu -26 123 1 5 1471 1930 262 76 12 chr3 116240136 116240731 -43359052 - Lx6 LINE L1 -26 7434 6802 5 1471 3348 45 2 2 chr3 116240734 116241134 -43358649 - MTB LTR MaLR 0 400 1 5 1471 21 36 0 0 chr3 116241155 116241183 -43358600 + AT_rich Low_complexity Low_complexity 1 28 0 5 1471 405 236 47 9 chr3 116241240 116241347 -43358436 + B3 SINE B2 9 119 -97 5 1471 242 261 117 146 chr3 116241241 116241358 -43358425 + B4A SINE B4 10 216 -76 5 1471 582 221 0 0 chr3 116241358 116241471 -43358312 + B1_Mur4 SINE Alu 38 150 0 5 1471 242 261 117 146 chr3 116241471 116241488 -43358295 + B4A SINE B4 217 249 -43 5 1471 234 0 0 0 chr3 116241706 116241732 -43358051 + (TG)n Simple_repeat Simple_repeat 1 26 0 5 1471 649 132 12 132 chr3 116241734 116241812 -43357971 - B1_Mus1 SINE Alu -2 146 89 5 1471 369 0 0 0 chr3 116241812 116241853 -43357930 + (TG)n Simple_repeat Simple_repeat 2 42 0 5 1471 649 132 12 132 chr3 116241853 116241940 -43357843 - B1_Mus1 SINE Alu -60 88 1 5 1471 710 157 62 28 chr3 116242299 116242443 -43357340 - B1_Mur2 SINE Alu 0 149 1 5 1471 453 265 114 80 chr3 116242979 116243007 -43356776 - B3A SINE B2 -11 187 160 5 1471 564 270 25 25 chr3 116243007 116243170 -43356613 - RSINE1 SINE B4 0 165 3 5 1471 234 0 0 0 chr3 116243174 116243200 -43356583 + (TTTG)n Simple_repeat Simple_repeat 4 29 0 5 1471 608 192 112 0 chr3 116243201 116243326 -43356457 - B1_Mur1 SINE Alu -9 140 2 5 1471 393 39 0 0 chr3 116243326 116243377 -43356406 + (TG)n Simple_repeat Simple_repeat 2 52 0 5 1471 453 265 114 80 chr3 116243377 116243516 -43356267 - B3A SINE B2 -39 159 10 5 1471 182 265 70 42 chr3 116244053 116244124 -43355659 + L2c LINE L2 2922 2994 -393 5 1471 311 132 15 0 chr3 116244139 116244207 -43355576 + (TC)n Simple_repeat Simple_repeat 2 70 0 5 1471 454 191 43 60 chr3 116244218 116244335 -43355448 - PB1D10 SINE Alu -1 116 2 5 1471 27 29 0 0 chr3 116245863 116245897 -43353886 + AT_rich Low_complexity Low_complexity 1 34 0 5 1471 853 141 0 21 chr3 116246984 116247129 -43352654 + B1_Mur4 SINE Alu 9 150 0 5 1471 686 176 84 12 chr3 116247295 116247462 -43352321 - B3A SINE B2 -18 180 2 5 1471 1145 82 0 0 chr3 116247480 116247627 -43352156 - B1_Mus2 SINE Alu 0 147 1 5 1471 337 323 0 0 chr3 116248479 116248578 -43351205 - PB1D10 SINE Alu 0 117 19 5 1471 1547 43 16 0 chr3 116248682 116248869 -43350914 + B2_Mm2 SINE B2 1 190 -5 5 1471 378 0 0 0 chr3 116249650 116249692 -43350091 + (TG)n Simple_repeat Simple_repeat 1 42 0 5 1471 737 259 14 0 chr3 116249700 116249847 -43349936 - RSINE1 SINE B4 -16 149 1 5 1471 369 0 0 0 chr3 116249915 116249956 -43349827 + (TC)n Simple_repeat Simple_repeat 2 42 0 5 1471 255 61 0 0 chr3 116249956 116249988 -43349795 + (TG)n Simple_repeat Simple_repeat 2 34 0 5 1471 527 311 22 52 chr3 116249993 116250264 -43349519 - B4A SINE B4 -14 278 16 5 1471 739 173 0 0 chr3 116252119 116252246 -43347537 + B1_Mus1 SINE Alu 22 148 0 5 1471 597 160 0 0 chr3 116252248 116252354 -43347429 + GA-rich Low_complexity Low_complexity 3 108 0 5 1471 24 32 0 0 chr3 116252816 116252847 -43346936 + AT_rich Low_complexity Low_complexity 1 31 0 5 1471 240 86 0 0 chr3 116252929 116252964 -43346819 + (TA)n Simple_repeat Simple_repeat 2 36 0 5 1471 379 100 14 14 chr3 116252964 116253034 -43346749 + (TG)n Simple_repeat Simple_repeat 2 72 0 5 1471 384 212 367 17 chr3 116253052 116253172 -43346611 - RSINE1 SINE B4 -1 164 3 5 1471 1438 76 16 0 chr3 116253345 116253530 -43346253 - B2_Mm2 SINE B2 -6 189 2 5 1471 328 157 39 39 chr3 116254149 116254241 -43345542 + MLT1A1 LTR MaLR 283 396 -12 5 1471 33003 73 18 11 chr3 116255024 116260219 -43339564 + L1Md_F2 LINE L1 355 5586 -297 5 183 7667 52 5 69 chr3 116260219 116261283 -43338500 + L1Md_F2 LINE L1 5587 6582 0 5 1472 4941 58 20 14 chr3 116261286 116261932 -43337851 + L1Md_F2 LINE L1 5933 6582 0 5 1472 540 0 0 0 chr3 116262234 116262294 -43337489 + (CAAAT)n Simple_repeat Simple_repeat 2 61 0 5 1472 665 215 125 31 chr3 116262294 116262486 -43337297 + B3 SINE B2 1 210 -6 5 1472 306 214 84 14 chr3 116263054 116263125 -43336658 + ID4_ SINE ID 2 77 -6 5 1472 2336 64 0 35 chr3 116263180 116263520 -43336263 + LTRIS_Mus LTR ERV1 1 328 -259 5 1472 225 0 0 0 chr3 116263520 116263545 -43336238 + (T)n Simple_repeat Simple_repeat 1 25 0 5 1472 1814 72 3 61 chr3 116264459 116264753 -43335030 + LTRIS_Mus LTR ERV1 311 587 0 5 1472 864 176 0 14 chr3 116264839 116264983 -43334800 - B1_Mur4 SINE Alu -8 142 1 5 1472 866 228 28 24 chr3 116265396 116265607 -43334176 + B3 SINE B2 1 212 -4 5 1472 247 123 0 50 chr3 116266669 116266729 -43333054 + CT-rich Low_complexity Low_complexity 4 60 0 5 1472 23 33 0 0 chr3 116267100 116267130 -43332653 + AT_rich Low_complexity Low_complexity 1 30 0 5 1472 262 304 21 48 chr3 116267213 116267358 -43332425 - L1M5 LINE L1 -875 5569 5429 5 1472 396 0 0 0 chr3 116267396 116267440 -43332343 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 5 1472 584 291 30 0 chr3 116267818 116267983 -43331800 - B3A SINE B2 -26 172 3 5 1472 802 149 22 0 chr3 116268348 116268482 -43331301 + B1_Mus1 SINE Alu 5 141 -7 5 1472 300 70 0 0 chr3 116268486 116268529 -43331254 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 5 1472 1058 197 49 5 chr3 116268968 116269172 -43330611 - B3 SINE B2 -2 214 2 5 1472 807 199 12 12 chr3 116269197 116269360 -43330423 - B3 SINE B2 -1 215 53 5 1472 914 153 60 171 chr3 116269382 116269846 -43329937 + ORR1C1 LTR MaLR 1 370 -8 5 1472 742 271 68 79 chr3 116269871 116270163 -43329620 + B4 SINE B4 1 289 -3 5 1472 308 197 14 14 chr3 116270442 116270514 -43329269 + PB1D9 SINE Alu 41 112 -8 5 1472 219 279 16 0 chr3 116270625 116270686 -43329097 + ID4 SINE ID 22 83 0 5 1472 1102 124 67 0 chr3 116270894 116271072 -43328711 - B2_Mm2 SINE B2 -3 192 3 5 1472 712 187 253 24 chr3 116271091 116271261 -43328522 - B3 SINE B2 -6 210 2 5 1472 247 202 65 43 chr3 116271298 116271391 -43328392 - Lx9 LINE L1 -6 7638 7544 5 1472 728 182 14 7 chr3 116272049 116272187 -43327596 + B1_Mus1 SINE Alu 9 147 -1 5 1472 459 38 49 25 chr3 116272284 116272365 -43327418 + (TCTCTG)n Simple_repeat Simple_repeat 6 88 0 5 1472 360 0 0 0 chr3 116272365 116272405 -43327378 + (TG)n Simple_repeat Simple_repeat 2 41 0 5 1472 460 169 91 11 chr3 116272414 116272517 -43327266 - B1_Mur4 SINE Alu -8 112 2 5 1472 230 235 79 90 chr3 116272440 116272529 -43327254 - MT2B LTR ERVL -361 240 153 6 1472 522 0 0 0 chr3 116273405 116273463 -43326320 + (CA)n Simple_repeat Simple_repeat 2 59 0 6 1472 464 212 0 0 chr3 116274232 116274312 -43325471 - ID4_ SINE ID -2 81 2 6 1472 243 0 0 0 chr3 116274323 116274350 -43325433 + (TCTG)n Simple_repeat Simple_repeat 4 30 0 6 1472 246 347 32 40 chr3 116274352 116274478 -43325305 - B1F1 SINE Alu -11 138 14 6 1472 201 258 15 29 chr3 116275096 116275164 -43324619 + MIR SINE MIR 63 129 -133 6 1472 2733 166 47 20 chr3 116275166 116275720 -43324063 - RMER15 LTR ERVL 0 575 7 6 1472 671 186 23 8 chr3 116275909 116276039 -43323744 + B1_Mur2 SINE Alu 18 149 0 6 1472 405 0 0 0 chr3 116276265 116276310 -43323473 + (TG)n Simple_repeat Simple_repeat 2 46 0 6 1472 369 350 22 0 chr3 116276374 116276511 -43323272 - B4A SINE B4 -150 142 3 6 1472 245 105 0 0 chr3 116276688 116276726 -43323057 + B3 SINE B2 2 39 -177 6 1472 1107 79 146 0 chr3 116276726 116276891 -43322892 + B2_Mm2 SINE B2 1 189 -6 6 1472 384 236 54 54 chr3 116277124 116277236 -43322547 + PB1D9 SINE Alu 3 114 -6 6 1472 1192 61 0 7 chr3 116277292 116277441 -43322342 + B1_Mus1 SINE Alu 1 148 0 6 1472 3356 91 42 26 chr3 116277688 116277704 -43322079 - Lx3_Mus LINE L1 -1 6980 6965 6 1472 994 133 0 22 chr3 116277704 116277888 -43321895 + CT-rich Low_complexity Low_complexity 1 180 0 6 1472 3356 91 42 26 chr3 116277888 116278368 -43321415 - Lx3_Mus LINE L1 -17 6964 6477 6 1472 7158 64 45 14 chr3 116278368 116279663 -43320120 - Lx3_Mus LINE L1 -720 6289 4938 6 1472 590 226 88 0 chr3 116279877 116280014 -43319769 - B1_Mur2 SINE Alu 0 149 1 6 1472 180 207 152 54 chr3 116280723 116280815 -43318968 - MIR SINE MIR -129 133 33 6 1472 189 0 0 0 chr3 116281413 116281434 -43318349 + (TG)n Simple_repeat Simple_repeat 2 22 0 6 1472 870 220 88 10 chr3 116281443 116281636 -43318147 - B3 SINE B2 -7 209 2 6 1472 501 237 126 34 chr3 116282931 116283106 -43316677 - B3 SINE B2 -25 191 1 6 1472 1427 77 44 0 chr3 116283143 116283326 -43316457 + B2_Mm2 SINE B2 1 191 -4 6 1472 1657 63 0 0 chr3 116283331 116283522 -43316261 + B2_Mm1t SINE B2 2 192 -1 6 1472 226 88 0 81 chr3 116283686 116283723 -43316060 - B1_Mur4 SINE Alu -116 34 1 6 1472 1162 76 0 20 chr3 116283814 116283961 -43315822 + B1_Mus2 SINE Alu 4 147 0 6 1472 216 97 0 0 chr3 116283961 116283992 -43315791 + (A)n Simple_repeat Simple_repeat 1 31 0 6 1472 32 0 0 0 chr3 116284261 116284293 -43315490 + AT_rich Low_complexity Low_complexity 1 32 0 6 1472 1390 91 37 5 chr3 116284660 116284847 -43314936 - B2_Mm2 SINE B2 -2 193 1 6 1472 617 309 79 49 chr3 116285028 116285293 -43314490 + Tigger7 DNA MER2_type 21 293 -2198 6 1472 28 0 0 0 chr3 116286034 116286062 -43313721 + AT_rich Low_complexity Low_complexity 1 28 0 6 1472 333 295 43 26 chr3 116286225 116286249 -43313534 - PB1D10 SINE Alu 0 117 4 6 1472 335 287 11 11 chr3 116286249 116286337 -43313446 - ID_B1 SINE B4 -52 172 85 6 1472 1044 230 14 5 chr3 116286531 116286745 -43313038 + B3 SINE B2 1 216 0 6 1472 309 216 55 126 chr3 116287049 116287176 -43312607 - PB1 SINE Alu -5 122 5 6 1472 491 202 174 0 chr3 116288392 116288501 -43311282 - B1F1 SINE Alu -21 128 1 6 1472 341 244 12 25 chr3 116288432 116288512 -43311271 - B4A SINE B4 -137 155 77 6 1472 391 256 0 0 chr3 116289200 116289282 -43310501 - ID4_ SINE ID -1 82 1 6 1472 313 234 25 38 chr3 116289303 116289383 -43310400 - ID4_ SINE ID -3 80 2 6 1472 1383 87 47 37 chr3 116289597 116289788 -43309995 - B2_Mm2 SINE B2 -2 193 1 6 1472 246 62 0 0 chr3 116289919 116289951 -43309832 + (TG)n Simple_repeat Simple_repeat 1 32 0 6 1472 707 272 13 6 chr3 116289956 116290115 -43309668 - B3A SINE B2 -38 160 1 6 1472 754 226 46 67 chr3 116290408 116290693 -43309090 + RLTR15 LTR ERVK 8 286 -73 6 1472 641 229 35 7 chr3 116291849 116291990 -43307793 - B1_Mus2 SINE Alu -2 145 1 6 1472 1235 48 0 20 chr3 116292024 116292173 -43307610 - B1_Mus2 SINE Alu 0 147 2 6 1472 425 331 66 8 chr3 116292230 116292352 -43307431 - RSINE1 SINE B4 -33 132 4 6 1472 516 280 0 0 chr3 116293569 116293687 -43306096 - B1F SINE Alu -22 127 10 6 1472 775 181 19 65 chr3 116293794 116293948 -43305835 + B1_Mur4 SINE Alu 2 148 -2 6 1472 1185 109 45 94 chr3 116294116 116294318 -43305465 + B2_Mm2 SINE B2 2 193 -2 6 1472 1225 82 0 0 chr3 116294321 116294468 -43305315 + B1_Mus1 SINE Alu 1 147 -1 6 1472 207 0 0 0 chr3 116294469 116294492 -43305291 + (CAAT)n Simple_repeat Simple_repeat 3 25 0 6 1472 225 315 42 59 chr3 116294695 116294813 -43304970 + PB1 SINE Alu 5 120 -7 6 1472 388 285 33 0 chr3 116294848 116294951 -43304832 + B1F1 SINE Alu 2 108 -12 6 1472 411 106 0 0 chr3 116295253 116295319 -43304464 + (CA)n Simple_repeat Simple_repeat 1 66 0 6 1472 346 265 9 29 chr3 116295744 116295849 -43303934 - L1MA8 LINE L1 -32 6259 6157 6 1472 321 229 125 0 chr3 116295922 116296018 -43303765 + PB1D9 SINE Alu 5 112 -8 6 1472 410 245 10 21 chr3 116296641 116296737 -43303046 + PB1 SINE Alu 31 125 -2 6 1472 315 0 0 0 chr3 116296788 116296823 -43302960 + (CA)n Simple_repeat Simple_repeat 2 36 0 6 1472 216 0 0 0 chr3 116297029 116297053 -43302730 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 6 1472 231 305 162 0 chr3 116297061 116297166 -43302617 + MER20 DNA MER1_type 24 145 -74 6 1472 566 211 154 71 chr3 116299203 116299469 -43300314 + MER33 DNA MER1_type 31 318 -6 6 1472 1231 68 0 0 chr3 116299583 116299730 -43300053 + B1_Mus2 SINE Alu 1 147 0 6 1472 316 271 50 40 chr3 116299781 116299881 -43299902 + MER58B DNA MER1_type 164 264 -77 6 1472 599 78 11 0 chr3 116299930 116300020 -43299763 + (TA)n Simple_repeat Simple_repeat 2 92 0 6 1472 341 225 0 101 chr3 116300095 116300115 -43299668 + MER58B DNA MER1_type 262 281 -60 6 1472 994 191 158 10 chr3 116300115 116300311 -43299472 - URR1B DNA MER1_type 0 225 1 6 1472 341 225 0 101 chr3 116300311 116300379 -43299404 + MER58B DNA MER1_type 282 341 0 6 1472 362 216 59 12 chr3 116300585 116300692 -43299091 + MIR SINE MIR 1 113 -155 6 1472 394 295 23 8 chr3 116300807 116300940 -43298843 + MIR SINE MIR 128 262 0 6 1472 196 212 0 29 chr3 116301240 116301308 -43298475 + (TG)n Simple_repeat Simple_repeat 1 66 0 6 1472 22 56 0 0 chr3 116301366 116301402 -43298381 + AT_rich Low_complexity Low_complexity 1 36 0 6 1472 595 256 132 0 chr3 116301422 116301551 -43298232 - RSINE1 SINE B4 -17 148 3 6 1472 281 250 53 80 chr3 116301551 116301664 -43298119 - B4A SINE B4 -62 230 121 6 1472 566 241 118 69 chr3 116301686 116301752 -43298031 - B3A SINE B2 -15 201 137 6 1472 231 114 0 0 chr3 116301752 116301787 -43297996 + (TCTG)n Simple_repeat Simple_repeat 4 38 0 6 1472 566 217 138 44 chr3 116301787 116301913 -43297870 - B3A SINE B2 -47 151 8 6 1472 768 169 88 7 chr3 116301938 116302075 -43297708 - B1_Mur4 SINE Alu 0 150 3 6 1472 457 229 10 0 chr3 116302076 116302172 -43297611 - B4A SINE B4 -195 97 1 6 1472 864 199 7 7 chr3 116302214 116302361 -43297422 + B1_Mur2 SINE Alu 2 148 -1 6 1472 325 102 34 0 chr3 116302520 116302579 -43297204 + (TC)n Simple_repeat Simple_repeat 2 62 0 6 1472 441 36 0 0 chr3 116302580 116302635 -43297148 + (CA)n Simple_repeat Simple_repeat 2 56 0 6 1472 189 286 40 20 chr3 116302711 116302761 -43297022 + MIRm SINE MIR 196 246 -30 6 1472 509 191 8 94 chr3 116303072 116303084 -43296699 - B1_Mus2 SINE Alu 0 147 136 6 1472 270 0 0 0 chr3 116303084 116303114 -43296669 + (TTCA)n Simple_repeat Simple_repeat 3 32 0 6 1472 509 191 8 94 chr3 116303114 116303228 -43296555 - B1_Mus2 SINE Alu -12 135 32 6 1472 1449 84 5 5 chr3 116303249 116303440 -43296343 - B2_Mm1t SINE B2 -2 191 1 6 1472 210 191 0 0 chr3 116303643 116303685 -43296098 + (CATATA)n Simple_repeat Simple_repeat 4 45 0 6 1472 1763 36 0 0 chr3 116303814 116304007 -43295776 + B2_Mm1t SINE B2 1 193 0 6 1472 198 0 0 0 chr3 116304014 116304036 -43295747 + (CAAAA)n Simple_repeat Simple_repeat 3 24 0 6 1472 958 164 14 0 chr3 116304350 116304496 -43295287 + B1_Mur2 SINE Alu 1 148 -1 6 1472 567 191 294 52 chr3 116304737 116305046 -43294737 - ORR1C2 LTR MaLR 0 384 1 6 1472 693 225 47 0 chr3 116305413 116305542 -43294241 + B1_Mur4 SINE Alu 1 135 -15 6 1472 210 37 0 0 chr3 116305600 116305627 -43294156 + (TTTA)n Simple_repeat Simple_repeat 1 27 0 6 1472 1219 33 33 0 chr3 116305627 116305778 -43294005 - B2_Mm2 SINE B2 -38 157 2 6 1472 1310 41 0 0 chr3 116305855 116306001 -43293782 - B1_Mus2 SINE Alu -1 146 1 6 1472 454 276 14 36 chr3 116306558 116306697 -43293086 + U1 snRNA snRNA 21 156 -9 6 1472 324 263 46 83 chr3 116306982 116307090 -43292693 + PB1D10 SINE Alu 1 104 -13 6 1472 303 28 0 0 chr3 116307092 116307128 -43292655 + (TAA)n Simple_repeat Simple_repeat 1 36 0 6 1472 471 18 0 0 chr3 116308942 116308998 -43290785 + (TG)n Simple_repeat Simple_repeat 1 56 0 6 1472 464 285 83 0 chr3 116309004 116309148 -43290635 - B3A SINE B2 -42 156 1 6 1472 1766 36 0 0 chr3 116309351 116309544 -43290239 - B2_Mm1a SINE B2 0 193 1 6 1472 884 146 0 0 chr3 116309566 116309696 -43290087 - B1_Mur2 SINE Alu 0 149 20 6 1472 1193 92 6 0 chr3 116309697 116309861 -43289922 - B2_Mm1t SINE B2 -28 165 1 6 1472 1229 75 0 0 chr3 116310921 116311068 -43288715 + B1_Mus2 SINE Alu 1 147 0 6 1472 195 129 0 0 chr3 116311068 116311099 -43288684 + (A)n Simple_repeat Simple_repeat 1 31 0 6 1472 255 269 0 0 chr3 116311670 116311737 -43288046 + (TG)n Simple_repeat Simple_repeat 2 68 0 6 1472 371 284 12 0 chr3 116311738 116311819 -43287964 - RSINE1 SINE B4 0 165 84 7 1472 640 146 100 0 chr3 116311953 116312063 -43287720 + B3 SINE B2 1 121 -95 7 1472 3213 74 10 0 chr3 116312115 116312507 -43287276 - MTA_Mm LTR MaLR 0 396 1 7 1472 206 158 26 0 chr3 116312507 116312545 -43287238 + CT-rich Low_complexity Low_complexity 1 39 0 7 1472 1181 68 0 26 chr3 116312563 116312714 -43287069 + B1_Mus2 SINE Alu 1 147 0 7 1472 1878 94 83 42 chr3 116313504 116313816 -43285967 - Lx4A LINE L1 0 7058 6734 7 1472 23 68 0 0 chr3 116314036 116314080 -43285703 + AT_rich Low_complexity Low_complexity 1 44 0 7 1472 755 150 81 22 chr3 116314607 116314743 -43285040 - B1_Mur4 SINE Alu -2 148 5 7 1472 252 331 83 26 chr3 116314773 116314863 -43284920 - L1ME3 LINE L1 -90 6072 5983 7 1472 1273 175 249 30 chr3 116314863 116314960 -43284823 - ORR1B2 LTR MaLR 0 367 270 7 1472 180 0 0 0 chr3 116314960 116314980 -43284803 + (TTTAG)n Simple_repeat Simple_repeat 2 21 0 7 1472 1273 175 249 30 chr3 116314980 116315183 -43284600 - ORR1B2 LTR MaLR -98 269 3 7 1472 478 331 133 16 chr3 116315183 116315554 -43284229 - L1ME3 LINE L1 -180 5982 5563 7 1472 227 183 16 32 chr3 116315668 116315730 -43284053 - L1ME3 LINE L1 -846 5300 5240 7 1472 924 58 8 0 chr3 116315797 116315917 -43283866 - B1_Mm SINE Alu 0 147 27 7 1472 564 234 80 25 chr3 116315909 116316071 -43283712 - MER2 DNA MER2_type -34 311 141 7 1472 209 191 0 41 chr3 116316075 116316124 -43283659 + (TA)n Simple_repeat Simple_repeat 2 48 0 7 1472 269 212 94 0 chr3 116316124 116316209 -43283574 - MER2 DNA MER2_type -170 175 83 7 1472 522 176 68 10 chr3 116316321 116316424 -43283359 - PB1D9 SINE Alu -9 111 3 7 1472 183 42 0 0 chr3 116316433 116316457 -43283326 + (T)n Simple_repeat Simple_repeat 1 24 0 7 1472 497 216 18 18 chr3 116316548 116316661 -43283122 - ID_B1 SINE B4 -6 218 106 7 1472 295 200 29 0 chr3 116317583 116317653 -43282130 - ID4 SINE ID 0 83 12 7 1472 309 286 88 9 chr3 116317771 116317884 -43281899 - PB1 SINE Alu -5 122 1 7 1472 825 180 50 0 chr3 116317897 116318036 -43281747 - B1_Mus2 SINE Alu -1 146 1 7 1472 654 145 117 44 chr3 116318358 116318451 -43281332 - B1_Mus1 SINE Alu 0 148 40 7 1472 315 0 0 0 chr3 116318451 116318486 -43281297 + (TC)n Simple_repeat Simple_repeat 2 36 0 7 1472 654 145 117 44 chr3 116318486 116318529 -43281254 - B1_Mus1 SINE Alu -109 39 2 7 1472 425 303 121 48 chr3 116318559 116318889 -43280894 - ORR1E LTR MaLR -4 355 2 7 1472 228 256 19 0 chr3 116319019 116319080 -43280703 - MIRb SINE MIR -1 261 200 7 1472 196 205 51 0 chr3 116319636 116319675 -43280108 - MIRb SINE MIR -201 67 27 7 1472 23 43 0 21 chr3 116319894 116319922 -43279861 + AT_rich Low_complexity Low_complexity 1 28 0 7 1472 1547 60 22 0 chr3 116319922 116320104 -43279679 + B2_Mm2 SINE B2 2 187 -8 7 1472 23 43 0 21 chr3 116320104 116320123 -43279660 + AT_rich Low_complexity Low_complexity 1 19 0 7 1472 1104 188 39 0 chr3 116320150 116320358 -43279425 + B3 SINE B2 1 216 0 7 1472 1092 222 19 5 chr3 116320876 116321089 -43278694 - B3 SINE B2 0 216 1 7 1472 386 181 260 21 chr3 116322400 116322496 -43277287 - PB1D9 SINE Alu 0 120 2 7 1472 264 343 28 38 chr3 116322748 116322854 -43276929 + PB1D7 SINE Alu 6 110 -10 7 1472 315 0 0 0 chr3 116322854 116322889 -43276894 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 7 1472 22 80 0 0 chr3 116322913 116322963 -43276820 + AT_rich Low_complexity Low_complexity 1 50 0 7 1472 343 279 154 47 chr3 116323652 116323866 -43275917 + MER90 LTR ERV1 30 266 -309 7 1472 332 221 151 19 chr3 116324848 116324954 -43274829 - PB1D9 SINE Alu 0 120 1 7 1472 420 314 39 0 chr3 116324984 116325009 -43274774 - RSINE1 SINE B4 -2 163 138 7 1472 390 121 0 0 chr3 116325009 116325075 -43274708 + (TG)n Simple_repeat Simple_repeat 1 66 0 7 1472 420 314 39 0 chr3 116325075 116325205 -43274578 - RSINE1 SINE B4 -28 137 3 7 1472 755 219 111 11 chr3 116325283 116325463 -43274320 - B3A SINE B2 0 198 1 7 1472 1962 169 80 113 chr3 116325621 116326082 -43273701 + RLTR41 LTR ERV1 1 446 0 7 1472 615 248 36 0 chr3 116326148 116326285 -43273498 + B1_Mur2 SINE Alu 2 143 -6 7 1472 324 174 31 25 chr3 116326301 116326460 -43273323 + GA-rich Low_complexity Low_complexity 3 162 0 7 1472 345 179 0 0 chr3 116326543 116326610 -43273173 - L1M5 LINE L1 -702 5477 5411 7 1472 322 215 50 12 chr3 116326618 116326698 -43273085 + B1_Mur2 SINE Alu 67 149 0 7 1472 333 337 42 10 chr3 116326793 116326889 -43272894 - RSINE1 SINE B4 -51 114 16 7 1472 542 194 29 10 chr3 116327050 116327154 -43272629 - PB1D10 SINE Alu 0 117 12 7 1472 231 240 34 111 chr3 116327059 116327176 -43272607 - MT2B2 LTR ERVL -322 262 155 7 1472 227 254 21 109 chr3 116327065 116327206 -43272577 - B4A SINE B4 -102 190 58 7 1472 454 227 0 55 chr3 116327573 116327755 -43272028 + C-rich Low_complexity Low_complexity 6 177 0 7 1472 750 124 46 23 chr3 116327798 116327971 -43271812 + CT-rich Low_complexity Low_complexity 1 177 0 7 1472 426 333 59 29 chr3 116327971 116328143 -43271640 - L1MEf LINE L1 -5362 1278 1100 7 1472 3294 51 15 10 chr3 116328143 116328537 -43271246 + MTA_Mm LTR MaLR 1 396 0 7 1472 426 333 59 29 chr3 116328537 116328568 -43271215 - L1MEf LINE L1 -5541 1099 1069 7 1472 288 294 159 0 chr3 116328640 116328810 -43270973 - L1MEf LINE L1 -5574 973 777 7 1472 255 61 0 0 chr3 116328844 116328877 -43270906 + (T)n Simple_repeat Simple_repeat 1 33 0 7 1472 1223 61 0 26 chr3 116328877 116329028 -43270755 - B1_Mus2 SINE Alu 0 147 1 7 1472 187 31 30 30 chr3 116329289 116329322 -43270461 + (TG)n Simple_repeat Simple_repeat 2 34 0 7 1472 574 300 92 40 chr3 116329333 116329680 -43270103 - L1M2 LINE L1 -517 5780 5416 7 1472 603 269 54 49 chr3 116330147 116330350 -43269433 - B3 SINE B2 -9 207 4 7 1472 745 187 21 7 chr3 116330419 116330559 -43269224 - B1_Mur2 SINE Alu -7 142 1 7 1472 525 255 28 0 chr3 116330733 116330839 -43268944 + PB1D9 SINE Alu 1 109 -11 7 1472 630 121 400 7 chr3 116330843 116330993 -43268790 + B3 SINE B2 2 210 -6 7 1472 794 169 27 47 chr3 116332169 116332318 -43267465 - B1_Mur2 SINE Alu 0 149 4 7 1472 1214 36 0 0 chr3 116332452 116332591 -43267192 + B1_Mus1 SINE Alu 1 139 -9 7 1472 21 0 0 0 chr3 116332759 116332780 -43267003 + AT_rich Low_complexity Low_complexity 1 21 0 7 1472 540 200 28 9 chr3 116333160 116333266 -43266517 + B3 SINE B2 1 108 -108 7 1472 29 47 0 0 chr3 116334081 116334124 -43265659 + AT_rich Low_complexity Low_complexity 1 43 0 7 1472 1244 88 123 0 chr3 116335613 116335783 -43264000 + B2_Mm2 SINE B2 2 192 -3 7 1472 1364 82 43 11 chr3 116336331 116336516 -43263267 - B2_Mm2 SINE B2 -4 191 1 7 1472 261 205 22 67 chr3 116338946 116339035 -43260748 + Lx8 LINE L1 7246 7330 -143 7 1472 271 204 0 0 chr3 116339400 116339444 -43260339 - RSINE1 SINE B4 -119 46 3 7 1472 1314 217 109 6 chr3 116339664 116340003 -43259780 + ORR1D1 LTR MaLR 1 374 0 7 1472 285 239 75 0 chr3 116340224 116340291 -43259492 + MIR SINE MIR 179 250 -12 7 1472 462 235 88 29 chr3 116340541 116340677 -43259106 + B1F SINE Alu 1 144 -5 7 1472 434 194 30 20 chr3 116341474 116341574 -43258209 - URR1A DNA MER1_type -45 181 81 7 1472 764 182 40 34 chr3 116342777 116342925 -43256858 + B1_Mur2 SINE Alu 1 149 0 7 1472 2091 94 94 0 chr3 116342945 116343243 -43256540 - ORR1A3 LTR MaLR 0 326 1 7 1472 1284 213 169 6 chr3 116343752 116344083 -43255700 + MTD LTR MaLR 35 419 0 7 1472 390 297 7 4 chr3 116344417 116344536 -43255247 + PB1D10 SINE Alu 10 130 -17 7 1472 408 40 0 0 chr3 116345749 116345799 -43253984 + (TATG)n Simple_repeat Simple_repeat 2 51 0 7 1472 398 247 0 13 chr3 116345800 116345878 -43253905 - RSINE1 SINE B4 -40 125 49 7 1472 268 216 118 48 chr3 116346015 116346223 -43253560 + L1MB7 LINE L1 5738 5966 -213 7 1472 525 204 85 18 chr3 116346651 116346778 -43253005 - B1_Mur3 SINE Alu -2 147 6 7 1472 214 125 71 0 chr3 116346988 116347044 -43252739 + A-rich Low_complexity Low_complexity 2 61 0 7 1472 515 250 55 49 chr3 116347442 116347606 -43252177 - RSINE1 SINE B4 0 165 1 7 1472 1153 8 0 0 chr3 116347669 116347803 -43251980 - B1_Mm SINE Alu 0 147 14 7 1472 636 174 33 40 chr3 116347803 116347819 -43251964 - ID_B1 SINE B4 0 224 76 7 1472 241 271 56 10 chr3 116348077 116348160 -43251623 - B1F SINE Alu -20 97 6 7 1472 501 291 105 62 chr3 116348894 116349151 -43250632 + B4A SINE B4 6 273 -19 7 1472 725 179 14 35 chr3 116349527 116349672 -43250111 - B1_Mur3 SINE Alu -7 142 1 7 1472 329 200 67 39 chr3 116349787 116349891 -43249892 + PB1D10 SINE Alu 10 116 -1 7 1472 1481 44 55 6 chr3 116350129 116350310 -43249473 - B2_Mm2 SINE B2 -5 190 1 7 1472 948 161 0 0 chr3 116351614 116351757 -43248026 - B1_Mus1 SINE Alu -5 143 1 7 1472 22 0 0 0 chr3 116352032 116352054 -43247729 + AT_rich Low_complexity Low_complexity 1 22 0 7 1472 223 275 27 55 chr3 116352067 116352140 -43247643 + ID4 SINE ID 1 71 -12 7 1472 666 294 47 9 chr3 116352471 116352666 -43247117 - B3A SINE B2 0 195 6 7 1472 245 275 123 12 chr3 116353042 116353123 -43246660 + PB1 SINE Alu 22 111 -16 7 1472 461 219 270 49 chr3 116353605 116353768 -43246015 + B3 SINE B2 1 199 -17 7 1472 1023 166 113 5 chr3 116354670 116354864 -43244919 + B3 SINE B2 2 216 0 7 1472 587 309 52 5 chr3 116355085 116355277 -43244506 + Tigger5 DNA MER2_type 9 209 -2197 7 1472 246 259 0 0 chr3 116355372 116355426 -43244357 + RCHARR1 DNA MER1_type 344 397 -577 7 1472 506 231 10 0 chr3 116355427 116355531 -43244252 + RCHARR1 DNA MER1_type 869 973 -1 7 1472 325 275 0 0 chr3 116355910 116355979 -43243804 - ID4 SINE ID -13 70 2 7 1472 513 293 122 0 chr3 116356367 116356589 -43243194 + MER2 DNA MER2_type 90 338 -7 7 1472 587 284 32 19 chr3 116356875 116357033 -43242750 + B3 SINE B2 42 201 -15 8 1472 742 187 56 28 chr3 116357042 116357185 -43242598 - B1_Mur3 SINE Alu 0 149 3 8 1472 1317 34 0 0 chr3 116357208 116357355 -43242428 + B1_Mus2 SINE Alu 1 147 0 8 1472 216 0 0 0 chr3 116357439 116357463 -43242320 + (TAA)n Simple_repeat Simple_repeat 2 25 0 8 1472 333 0 0 0 chr3 116357463 116357500 -43242283 + (GAA)n Simple_repeat Simple_repeat 2 38 0 8 1472 398 188 0 59 chr3 116357500 116357585 -43242198 + ID_B1 SINE B4 141 220 -4 8 1472 336 276 107 22 chr3 116357653 116357857 -43241926 - Lx6 LINE L1 -1563 5897 5677 8 1472 467 236 30 68 chr3 116358040 116358172 -43241611 + RSINE1 SINE B4 17 143 -22 8 1472 225 0 0 0 chr3 116358492 116358517 -43241266 + (A)n Simple_repeat Simple_repeat 1 25 0 8 1472 432 204 54 0 chr3 116358549 116358642 -43241141 + B3 SINE B2 2 99 -117 8 1472 601 274 146 21 chr3 116359250 116359585 -43240198 + L1_Mur3 LINE L1 4008 4384 -1496 8 1472 876 222 14 33 chr3 116359592 116359802 -43239981 + B3 SINE B2 8 213 -3 8 1472 1181 273 218 32 chr3 116359804 116360953 -43238830 + L1M2 LINE L1 4411 5772 -531 8 1472 225 94 0 0 chr3 116360953 116360985 -43238798 + (CATA)n Simple_repeat Simple_repeat 1 32 0 8 1472 840 190 0 21 chr3 116361000 116361145 -43238638 + B1_Mus1 SINE Alu 2 143 -5 8 1472 207 0 0 0 chr3 116361589 116361612 -43238171 + (TG)n Simple_repeat Simple_repeat 2 24 0 8 1472 266 291 0 37 chr3 116361775 116361857 -43237926 + ID4 SINE ID 5 83 0 8 1472 915 203 87 20 chr3 116362399 116362595 -43237188 + B3 SINE B2 3 211 -5 8 1472 279 0 0 0 chr3 116362667 116362698 -43237085 + (TC)n Simple_repeat Simple_repeat 1 31 0 8 1472 270 0 0 0 chr3 116362698 116362727 -43237056 + (CA)n Simple_repeat Simple_repeat 1 30 0 8 1472 493 202 106 23 chr3 116362821 116362953 -43236830 + ID_B1 SINE B4 68 210 -14 8 1472 880 58 83 0 chr3 116362836 116362956 -43236827 + B1_Mus2 SINE Alu 7 136 -11 8 1472 183 42 0 0 chr3 116362956 116362980 -43236803 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 8 1472 355 257 179 51 chr3 116362989 116363145 -43236638 + B3A SINE B2 5 180 -18 8 1472 765 117 8 24 chr3 116363207 116363330 -43236453 - B1_Mur4 SINE Alu -1 149 29 8 1472 367 286 34 51 chr3 116363573 116363691 -43236092 + PB1D10 SINE Alu 2 117 0 8 1472 1270 48 0 0 chr3 116363855 116364001 -43235782 + B1_Mm SINE Alu 2 147 0 8 1472 207 0 0 0 chr3 116364001 116364024 -43235759 + (A)n Simple_repeat Simple_repeat 1 23 0 8 1472 439 218 89 0 chr3 116366106 116366207 -43233576 - PB1D9 SINE Alu -9 111 2 8 1472 653 288 212 43 chr3 116366359 116366755 -43233028 + MLT1F1 LTR MaLR 1 463 -106 8 1472 248 346 205 12 chr3 116366761 116366922 -43232861 + ID_B1 SINE B4 2 193 -31 8 1472 471 281 38 30 chr3 116367322 116367450 -43232333 + ID_B1 SINE B4 85 215 -77 8 1472 1241 54 0 0 chr3 116367450 116367597 -43232186 + B1_Mus2 SINE Alu 1 147 0 8 1472 471 341 53 52 chr3 116367597 116367661 -43232122 + ID_B1 SINE B4 212 272 -20 8 1472 1203 82 0 0 chr3 116368289 116368435 -43231348 + B1_Mm SINE Alu 2 147 0 8 1472 575 194 0 18 chr3 116368536 116368646 -43231137 - PB1D9 SINE Alu 0 120 13 8 1472 247 139 125 12 chr3 116368646 116368726 -43231057 + Lx4A LINE L1 6970 7058 0 8 1472 933 201 21 11 chr3 116369096 116369287 -43230496 + B2_Mm2 SINE B2 1 193 -2 8 1472 583 258 7 36 chr3 116369310 116369447 -43230336 + B1_Mur3 SINE Alu 1 133 -16 8 1472 183 42 0 0 chr3 116369879 116369903 -43229880 + (CACAA)n Simple_repeat Simple_repeat 4 27 0 8 1472 755 256 23 17 chr3 116370006 116370181 -43229602 + B3A SINE B2 5 180 -18 8 1472 448 250 153 7 chr3 116370217 116370354 -43229429 + RSINE1 SINE B4 2 158 -7 8 1472 1257 94 0 0 chr3 116370363 116370533 -43229250 - B2_Mm2 SINE B2 -25 170 1 8 1472 821 255 30 5 chr3 116370558 116370759 -43229024 + B3 SINE B2 1 206 -10 8 1472 22 0 0 0 chr3 116370763 116370785 -43228998 + AT_rich Low_complexity Low_complexity 1 22 0 8 1472 329 298 37 28 chr3 116370807 116370914 -43228869 + ID_B1 SINE B4 108 215 -9 8 1472 195 246 0 0 chr3 116371150 116371207 -43228576 + A-rich Low_complexity Low_complexity 3 59 0 8 1472 222 116 0 0 chr3 116371339 116371382 -43228401 + (A)n Simple_repeat Simple_repeat 1 43 0 8 1472 542 202 41 66 chr3 116371410 116371532 -43228251 - PB1D9 SINE Alu 0 120 2 8 1472 555 233 26 8 chr3 116371568 116371685 -43228098 - PB1D9 SINE Alu -1 119 1 8 1472 467 367 65 0 chr3 116371718 116371887 -43227896 - B3A SINE B2 -18 180 1 8 1472 205 88 0 29 chr3 116371970 116372005 -43227778 + (TTTG)n Simple_repeat Simple_repeat 3 36 0 8 1472 1296 48 0 0 chr3 116372005 116372152 -43227631 - B1_Mm SINE Alu 0 147 1 8 1472 842 169 7 7 chr3 116373452 116373595 -43226188 + B1_Mur2 SINE Alu 5 147 -2 8 1472 581 224 0 41 chr3 116375291 116375412 -43224371 + PB1D9 SINE Alu 5 120 0 8 1472 301 148 0 18 chr3 116375878 116375933 -43223850 + HAL1-3A_ME LINE L1 1981 2034 -824 8 1472 300 300 138 37 chr3 116376756 116376974 -43222809 - MIR SINE MIR -1 261 22 8 1472 267 289 132 19 chr3 116377403 116377509 -43222274 - PB1D9 SINE Alu -1 119 2 8 1472 1039 219 10 46 chr3 116378793 116378989 -43220794 + B3A SINE B2 1 189 -9 8 1472 272 222 0 18 chr3 116379044 116379099 -43220684 + ID4_ SINE ID 13 66 -17 8 1472 381 22 0 0 chr3 116379101 116379147 -43220636 + (CA)n Simple_repeat Simple_repeat 2 47 0 8 1472 692 181 35 42 chr3 116379713 116379857 -43219926 + B1_Mur2 SINE Alu 7 149 0 8 1472 988 127 7 7 chr3 116380382 116380525 -43219258 - B1_Mur2 SINE Alu -6 143 1 8 1472 45 34 0 0 chr3 116380529 116380588 -43219195 + AT_rich Low_complexity Low_complexity 1 59 0 8 1472 315 0 0 0 chr3 116380614 116380649 -43219134 + (TCTA)n Simple_repeat Simple_repeat 4 38 0 8 1472 279 0 0 0 chr3 116380649 116380680 -43219103 + (CAAT)n Simple_repeat Simple_repeat 3 33 0 8 1472 429 315 39 0 chr3 116380989 116381119 -43218664 - B1F SINE Alu -14 135 1 8 1472 1140 69 14 20 chr3 116381159 116381307 -43218476 + B1_Mur3 SINE Alu 2 148 -1 8 1472 21 36 0 0 chr3 116381339 116381367 -43218416 + AT_rich Low_complexity Low_complexity 1 28 0 8 1472 23 0 0 0 chr3 116381417 116381440 -43218343 + AT_rich Low_complexity Low_complexity 1 23 0 8 1472 26 74 0 0 chr3 116381900 116381954 -43217829 + AT_rich Low_complexity Low_complexity 1 54 0 8 1472 1065 78 155 7 chr3 116382343 116382498 -43217285 + B2_Mm2 SINE B2 2 179 -16 8 1472 297 0 0 0 chr3 116383193 116383226 -43216557 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 8 1472 1215 51 0 0 chr3 116383226 116383364 -43216419 - B1_Mm SINE Alu -9 138 1 8 1472 311 234 167 21 chr3 116383879 116383975 -43215808 - PB1D10 SINE Alu -7 110 1 8 1472 668 223 8 0 chr3 116384220 116384350 -43215433 + RSINE1 SINE B4 2 132 -33 8 1472 723 144 72 0 chr3 116384784 116384909 -43214874 - B1_Mus1 SINE Alu -4 144 11 8 1472 357 219 70 87 chr3 116384815 116384930 -43214853 - MT2B LTR ERVL -337 264 152 8 1472 1253 35 14 0 chr3 116384976 116385119 -43214664 + B1_Mus2 SINE Alu 1 145 -2 8 1472 212 183 14 0 chr3 116385168 116385189 -43214594 + T-rich Low_complexity Low_complexity 54 75 0 8 1472 1268 41 7 0 chr3 116385189 116385335 -43214448 - B1_Mm SINE Alu 0 147 1 8 1472 212 183 14 0 chr3 116385335 116385384 -43214399 + T-rich Low_complexity Low_complexity 5 53 0 8 1472 1291 41 0 0 chr3 116385387 116385533 -43214250 - B1_Mm SINE Alu 0 147 2 8 1472 349 262 98 0 chr3 116385536 116385569 -43214214 - L1MA4 LINE L1 -472 5828 5794 8 1472 404 82 0 16 chr3 116385569 116385631 -43214152 + (TG)n Simple_repeat Simple_repeat 2 62 0 8 1472 357 298 59 0 chr3 116385631 116385789 -43213994 - L1MA4 LINE L1 -509 5782 5536 8 1472 643 250 6 114 chr3 116385797 116385973 -43213810 + RSINE1 SINE B4 9 165 0 8 1472 697 297 93 47 chr3 116386002 116386673 -43213110 - L1MA4 LINE L1 -705 5592 4837 8 1472 2071 159 93 21 chr3 116386689 116387074 -43212709 + MTC LTR MaLR 1 413 -8 8 1472 351 251 45 134 chr3 116387145 116387172 -43212611 - L1MA4 LINE L1 -1075 4772 4740 8 1472 1269 48 0 0 chr3 116387172 116387319 -43212464 - B1_Mus2 SINE Alu 0 147 1 8 1472 554 213 11 138 chr3 116387319 116387428 -43212355 - L1M2 LINE L1 -1349 4794 4700 8 1472 662 270 0 0 chr3 116387428 116387565 -43212218 - B1F SINE Alu -12 137 1 8 1472 554 213 11 138 chr3 116387565 116387629 -43212154 - L1M2 LINE L1 -1444 4699 4643 8 1472 191 36 36 0 chr3 116387723 116387751 -43212032 + (TTTA)n Simple_repeat Simple_repeat 1 29 0 8 1472 472 267 11 8 chr3 116387918 116388030 -43211753 - B1F1 SINE Alu -2 115 7 8 1472 289 241 34 102 chr3 116387952 116388040 -43211743 - MT2B2 LTR ERVL -344 240 159 8 1472 243 257 71 0 chr3 116388177 116388247 -43211536 + MER3 DNA MER1_type 19 93 -116 8 1472 330 45 0 0 chr3 116388247 116388291 -43211492 + (CA)n Simple_repeat Simple_repeat 1 44 0 8 1472 207 0 0 0 chr3 116388486 116388509 -43211274 + (TTGG)n Simple_repeat Simple_repeat 2 24 0 8 1472 279 0 0 0 chr3 116388679 116388710 -43211073 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 8 1472 1016 98 35 0 chr3 116388720 116388863 -43210920 + B1_Mus1 SINE Alu 1 148 0 8 1472 945 109 65 0 chr3 116388942 116389080 -43210703 + B1_Mus2 SINE Alu 1 147 0 8 1472 500 219 26 9 chr3 116389549 116389664 -43210119 + B1F2 SINE Alu 4 120 -29 8 1472 593 247 35 81 chr3 116390449 116390647 -43209136 + B3A SINE B2 1 189 -9 8 1472 1340 82 33 0 chr3 116390647 116390828 -43208955 - B2_Mm1a SINE B2 -5 188 1 9 1472 767 197 0 21 chr3 116390858 116391003 -43208780 - B1_Mus2 SINE Alu -5 142 1 9 1472 722 234 96 16 chr3 116391166 116391353 -43208430 + B3 SINE B2 1 202 -14 9 1472 335 129 32 0 chr3 116391353 116391415 -43208368 + (TATG)n Simple_repeat Simple_repeat 2 65 0 9 22 1472 282 84 27 chr3 116391506 116391991 -43207792 - Lx6 LINE L1 -4 7456 6944 9 1473 903 86 0 0 chr3 116392026 116392154 -43207629 - B2_Mm1a SINE B2 -25 168 41 9 1473 1153 48 0 39 chr3 116392252 116392405 -43207378 + B1_Mus2 SINE Alu 1 147 0 9 1473 180 0 0 0 chr3 116392405 116392425 -43207358 + (A)n Simple_repeat Simple_repeat 1 20 0 9 1473 842 48 0 258 chr3 116392719 116392917 -43206866 - B1_Mm SINE Alu 0 147 1 9 1473 499 306 7 7 chr3 116393140 116393278 -43206505 - B1F SINE Alu -1 148 11 9 1473 617 260 7 27 chr3 116393481 116393631 -43206152 - ID_B1 SINE B4 -8 216 70 9 1473 1120 191 34 0 chr3 116393632 116393841 -43205942 - B3 SINE B2 0 216 1 9 1473 345 223 62 0 chr3 116394403 116394517 -43205266 + L1MB4 LINE L1 5349 5478 -693 9 1473 605 253 19 57 chr3 116394679 116394838 -43204945 + RSINE1 SINE B4 2 154 -11 9 1473 759 241 6 6 chr3 116394932 116395095 -43204688 + RSINE1 SINE B4 3 165 0 9 1473 516 246 165 8 chr3 116395239 116395481 -43204302 + L1MB4 LINE L1 5692 5971 -209 9 1473 229 234 15 15 chr3 116395464 116395529 -43204254 + L1MB5 LINE L1 5887 5951 -223 9 1473 278 217 83 12 chr3 116395523 116395607 -43204176 + L1MB4 LINE L1 5882 5971 -209 9 1473 258 229 83 12 chr3 116395586 116395670 -43204113 + L1MB4 LINE L1 5882 5971 -209 9 1473 258 229 83 12 chr3 116395649 116395733 -43204050 + L1MB4 LINE L1 5882 5971 -209 9 1473 258 229 83 12 chr3 116395712 116395796 -43203987 + L1MB4 LINE L1 5882 5971 -209 9 1473 258 229 83 12 chr3 116395775 116395859 -43203924 + L1MB4 LINE L1 5882 5971 -209 9 1473 555 308 52 19 chr3 116395838 116396050 -43203733 + L1MB4 LINE L1 5882 6100 -80 9 1473 198 143 0 0 chr3 116396081 116396116 -43203667 + (CA)n Simple_repeat Simple_repeat 2 36 0 9 1473 3026 60 39 0 chr3 116396231 116396612 -43203171 + MTA_Mm LTR MaLR 1 396 0 9 1473 759 288 129 23 chr3 116396929 116397192 -43202591 - B4A SINE B4 0 292 2 9 1473 332 239 209 20 chr3 116398141 116398342 -43201441 + L1MDb LINE L1 884 1122 -5287 9 1473 233 337 80 20 chr3 116398555 116398655 -43201128 + PB1D7 SINE Alu 10 115 -5 9 1473 241 293 48 41 chr3 116398804 116398950 -43200833 + L1MDb LINE L1 2649 2795 -3611 9 1473 1605 183 96 14 chr3 116399182 116399537 -43200246 + ORR1C2 LTR MaLR 1 384 0 9 1473 320 299 93 9 chr3 116399600 116399708 -43200075 - PB1 SINE Alu 0 127 11 9 1473 392 174 294 0 chr3 116399770 116399879 -43199904 + B1_Mur4 SINE Alu 1 141 -9 9 1473 348 24 0 0 chr3 116399879 116399920 -43199863 + (CA)n Simple_repeat Simple_repeat 2 42 0 9 1473 697 47 63 0 chr3 116399922 116400049 -43199734 + (GA)n Simple_repeat Simple_repeat 2 136 0 9 1473 188 34 0 33 chr3 116400071 116400101 -43199682 + (TAAAA)n Simple_repeat Simple_repeat 4 32 0 9 1473 1368 50 72 0 chr3 116400105 116400286 -43199497 + B2_Mm2 SINE B2 1 194 -1 9 1473 228 207 230 0 chr3 116400312 116400399 -43199384 + L1M4 LINE L1 4732 4838 -1308 9 1473 607 309 126 39 chr3 116400399 116400685 -43199098 - MLT1A0 LTR MaLR 0 365 55 9 1473 679 284 27 4 chr3 116400682 116400872 -43198911 + B3A SINE B2 8 200 -16 9 1473 345 100 0 0 chr3 116400883 116400933 -43198850 + (CA)n Simple_repeat Simple_repeat 1 50 0 9 1473 782 156 31 0 chr3 116400976 116401135 -43198648 + B2_Mm2 SINE B2 2 179 -37 9 1473 423 0 0 0 chr3 116401135 116401182 -43198601 + (TAAA)n Simple_repeat Simple_repeat 3 49 0 9 1473 670 225 139 0 chr3 116401182 116401209 -43198574 + B3 SINE B2 180 213 -3 9 1473 271 338 66 42 chr3 116401217 116401384 -43198399 + B4 SINE B4 2 172 -120 9 1473 316 282 51 0 chr3 116401431 116401509 -43198274 + RSINE1 SINE B4 84 165 0 9 1473 381 302 94 69 chr3 116401574 116401851 -43197932 + L1ME1 LINE L1 5894 6177 -2 9 1473 477 181 104 9 chr3 116402197 116402303 -43197480 - B1_Mur1 SINE Alu -32 117 2 9 1473 747 238 6 23 chr3 116402330 116402506 -43197277 - B3 SINE B2 0 216 44 9 1473 829 224 76 5 chr3 116402521 116402718 -43197065 - B3 SINE B2 -4 212 2 9 1473 298 231 8 8 chr3 116403120 116403238 -43196545 + (TA)n Simple_repeat Simple_repeat 1 118 0 9 1473 550 238 27 20 chr3 116403846 116403992 -43195791 + B1F2 SINE Alu 2 148 -1 9 1473 313 243 29 0 chr3 116404243 116404313 -43195470 - ID4 SINE ID -10 73 2 9 1473 294 213 0 62 chr3 116404599 116404664 -43195119 + ID4_ SINE ID 2 62 -21 9 1473 650 186 54 54 chr3 116404672 116404820 -43194963 + B1_Mur1 SINE Alu 2 149 0 9 1473 1075 92 0 0 chr3 116404835 116404976 -43194807 + B1_Mus1 SINE Alu 2 142 -6 9 1473 207 0 0 0 chr3 116404976 116404999 -43194784 + (TAAAA)n Simple_repeat Simple_repeat 2 24 0 9 1473 620 243 0 20 chr3 116405352 116405503 -43194280 + B1_Mur2 SINE Alu 2 149 0 9 1473 1211 36 0 0 chr3 116406204 116406344 -43193439 + B1_Mm SINE Alu 1 140 -7 9 1473 204 40 0 0 chr3 116406344 116406369 -43193414 + (CA)n Simple_repeat Simple_repeat 2 26 0 9 1473 231 167 0 0 chr3 116406371 116406413 -43193370 + (TATG)n Simple_repeat Simple_repeat 3 44 0 9 1473 404 92 31 0 chr3 116406587 116406652 -43193131 + (GGGA)n Simple_repeat Simple_repeat 2 68 0 9 1473 266 269 48 56 chr3 116406688 116406700 -43193083 + ID_B1 SINE B4 96 218 -4 9 1473 424 236 54 18 chr3 116406700 116406812 -43192971 + B1F2 SINE Alu 28 143 -6 9 1473 589 153 144 61 chr3 116407095 116407227 -43192556 + B1_Mur4 SINE Alu 2 144 -6 9 1473 645 214 39 103 chr3 116407524 116407727 -43192056 - B3A SINE B2 -6 192 3 9 1473 238 160 133 0 chr3 116408072 116408147 -43191636 + L1MA9 LINE L1 6228 6312 0 9 1473 198 0 0 0 chr3 116408893 116408915 -43190868 + (CCAA)n Simple_repeat Simple_repeat 2 23 0 9 1473 639 183 229 22 chr3 116409386 116409565 -43190218 + B3 SINE B2 1 216 0 9 1473 416 174 174 0 chr3 116409587 116409685 -43190098 + B3 SINE B2 100 214 -2 9 1473 772 221 54 22 chr3 116410061 116410246 -43189537 + B3 SINE B2 2 192 -24 9 1473 1215 48 0 0 chr3 116410290 116410437 -43189346 + B1_Mm SINE Alu 1 147 0 9 1473 228 219 31 0 chr3 116410542 116410606 -43189177 + A-rich Low_complexity Low_complexity 3 68 0 9 1473 498 95 284 0 chr3 116410943 116411038 -43188745 - B1_Mus1 SINE Alu -12 136 15 9 1473 345 264 0 33 chr3 116411203 116411293 -43188490 + B1F SINE Alu 54 140 -9 9 1473 9412 115 15 9 chr3 116411293 116413556 -43186227 + Lx LINE L1 4382 6654 0 9 1473 300 214 139 93 chr3 116416483 116416612 -43183171 - B1F SINE Alu 0 149 15 9 1473 899 188 85 142 chr3 116416747 116417182 -43182601 + RMER17C LTR ERVK 1 410 0 9 1473 269 100 20 0 chr3 116417229 116417279 -43182504 + (TG)n Simple_repeat Simple_repeat 2 52 0 9 1473 439 326 14 7 chr3 116417405 116417544 -43182239 - B1F SINE Alu -7 142 3 9 1473 1297 173 31 23 chr3 116417641 116417902 -43181881 + ORR1B1 LTR MaLR 132 394 0 9 1473 9413 140 52 136 chr3 116417903 116419047 -43180736 + ORR1B1-int LTR MaLR 2 1032 -931 9 1473 1212 28 7 7 chr3 116419047 116419193 -43180590 + B1_Mus1 SINE Alu 2 147 -1 9 1473 9413 140 52 136 chr3 116419193 116420188 -43179595 + ORR1B1-int LTR MaLR 1033 1963 0 9 1473 1943 156 6 14 chr3 116420203 116420554 -43179229 + ORR1B1 LTR MaLR 47 394 0 9 1473 540 204 0 9 chr3 116420554 116420668 -43179115 - L1_Rod LINE L1 -2496 3351 3239 9 1473 677 83 83 9 chr3 116421366 116421475 -43178308 + RLTR20D LTR ERVK 1 117 -451 9 1473 250 208 13 89 chr3 116421720 116421799 -43177984 + RMER3D-int LTR ERVK 178 250 -2592 9 1473 1703 172 35 27 chr3 116421936 116422317 -43177466 + RLTR20D LTR ERVK 1 413 -92 9 1473 411 21 0 0 chr3 116422317 116422365 -43177418 + (TC)n Simple_repeat Simple_repeat 2 49 0 9 1473 405 0 0 0 chr3 116422365 116422409 -43177374 + (TG)n Simple_repeat Simple_repeat 2 46 0 9 1473 741 264 173 42 chr3 116422409 116422501 -43177282 + RLTR20D LTR ERVK 414 504 -1 9 1473 273 140 0 0 chr3 116422641 116422698 -43177085 + (TCTG)n Simple_repeat Simple_repeat 4 60 0 9 1473 754 184 0 7 chr3 116422708 116422845 -43176938 - B3 SINE B2 -80 136 1 9 1473 627 120 10 0 chr3 116422929 116423029 -43176754 + B2_Mm2 SINE B2 2 102 -93 9 1473 837 79 0 0 chr3 116423032 116423146 -43176637 + (GAAA)n Simple_repeat Simple_repeat 1 114 0 9 1473 367 256 0 24 chr3 116423454 116423538 -43176245 + ID_B1 SINE B4 130 211 -13 9 1473 8440 30 1 31 chr3 116423564 116424379 -43175404 - L1Md_T LINE L1 0 6582 5798 9 1473 1269 20 0 0 chr3 116424379 116424525 -43175258 - B1_Mm SINE Alu 0 147 2 9 1473 8440 21 0 70 chr3 116424525 116424866 -43174917 - L1Md_T LINE L1 -86 5797 5457 9 1473 730 0 0 0 chr3 116424864 116424947 -43174836 + L1Md_T LINE L1 5369 5451 -432 9 1473 1474 69 16 0 chr3 116424947 116425135 -43174648 - B2_Mm2 SINE B2 0 195 5 9 1473 335 259 28 0 chr3 116425135 116425159 -43174624 + L1M5 LINE L1 5481 5507 -733 9 1473 406 222 87 61 chr3 116425175 116425290 -43174493 + PB1D9 SINE Alu 2 119 -1 9 1473 789 160 8 0 chr3 116425297 116425428 -43174355 + B1_Mur3 SINE Alu 17 148 -1 9 1473 254 95 24 0 chr3 116425779 116425821 -43173962 + (GA)n Simple_repeat Simple_repeat 2 44 0 9 1473 713 171 0 15 chr3 116425914 116426045 -43173738 - B1_Mur4 SINE Alu -21 129 1 9 1473 249 33 0 0 chr3 116426232 116426262 -43173521 + (T)n Simple_repeat Simple_repeat 1 30 0 9 1473 1709 26 0 0 chr3 116426272 116426465 -43173318 - B2_Mm1a SINE B2 0 193 1 9 1473 423 0 0 0 chr3 116426613 116426660 -43173123 + (CA)n Simple_repeat Simple_repeat 1 47 0 9 1473 960 160 57 76 chr3 116426979 116427189 -43172594 + RMER4B LTR ERVK 380 585 0 9 1473 37 0 0 0 chr3 116427407 116427444 -43172339 + AT_rich Low_complexity Low_complexity 1 37 0 9 1473 908 160 42 15 chr3 116427467 116427630 -43172153 - RMER10B LTR ERVL 0 398 193 9 1473 625 56 22 0 chr3 116427630 116427720 -43172063 + (GA)n Simple_repeat Simple_repeat 2 93 0 9 1473 760 106 218 23 chr3 116427720 116427862 -43171921 - RMER10B LTR ERVL -206 192 14 9 1473 581 226 145 62 chr3 116427905 116428084 -43171699 - B3 SINE B2 -22 194 1 9 1473 390 21 0 0 chr3 116428125 116428172 -43171611 + (TG)n Simple_repeat Simple_repeat 1 47 0 1 1473 749 226 25 19 chr3 116428200 116428358 -43171425 - B3A SINE B2 -36 162 4 1 1473 213 214 300 0 chr3 116428405 116428475 -43171308 - B4A SINE B4 -201 91 1 1 1473 551 168 204 0 chr3 116428846 116428959 -43170824 - B1_Mur1 SINE Alu -13 136 1 1 1473 702 109 16 8 chr3 116429541 116429670 -43170113 + (TC)n Simple_repeat Simple_repeat 1 130 0 1 1473 597 204 120 22 chr3 116429830 116430106 -43169677 + RodERV21-int LTR ERV1 9 311 -4680 1 1473 270 258 155 0 chr3 116430099 116430196 -43169587 + RodERV21-int LTR ERV1 455 566 -4425 1 1473 572 191 8 68 chr3 116430199 116430223 -43169560 + B3 SINE B2 14 37 -179 1 1473 1334 105 16 0 chr3 116430223 116430413 -43169370 + B2_Mm2 SINE B2 1 193 -2 1 1473 572 191 8 68 chr3 116430413 116430506 -43169277 + B3 SINE B2 38 124 -92 1 1473 26 0 0 0 chr3 116430538 116430564 -43169219 + AT_rich Low_complexity Low_complexity 1 26 0 1 1473 251 324 60 13 chr3 116430729 116430879 -43168904 + B3A SINE B2 55 211 -5 1 1473 413 277 25 0 chr3 116430905 116431024 -43168759 + L1M5 LINE L1 5620 5741 -438 1 1473 249 210 32 0 chr3 116431026 116431088 -43168695 + ORR1C2 LTR MaLR 11 74 -310 1 1473 468 0 0 0 chr3 116431088 116431140 -43168643 + (TC)n Simple_repeat Simple_repeat 1 52 0 1 1473 439 234 131 0 chr3 116431140 116431247 -43168536 + ORR1C2 LTR MaLR 186 306 -78 1 1473 194 0 0 37 chr3 116431455 116431482 -43168301 + (TTTTTG)n Simple_repeat Simple_repeat 2 27 0 1 1473 1083 83 18 0 chr3 116431490 116431659 -43168124 - B2_Mm1a SINE B2 -5 188 17 1 1473 291 242 15 0 chr3 116431802 116431868 -43167915 - ID4_ SINE ID -2 81 15 1 1473 207 0 0 0 chr3 116431873 116431896 -43167887 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1 1473 1212 54 0 0 chr3 116431902 116432049 -43167734 - B1_Mus1 SINE Alu 0 148 2 1 1473 235 312 30 4 chr3 116433144 116433236 -43166547 + B1F SINE Alu 1 97 -52 1 1473 189 0 0 0 chr3 116433363 116433384 -43166399 + (A)n Simple_repeat Simple_repeat 1 21 0 1 1473 495 229 0 0 chr3 116433383 116433501 -43166282 + (TA)n Simple_repeat Simple_repeat 2 119 0 1 1473 293 236 118 59 chr3 116433791 116433926 -43165857 + MER92C LTR ERV1 227 369 -185 1 1473 633 73 0 0 chr3 116434052 116434148 -43165635 + (GGGAGA)n Simple_repeat Simple_repeat 1 96 0 1 1473 3757 222 109 8 chr3 116434159 116435042 -43164741 - RMER1C Other Other -132 1210 247 1 1473 403 283 146 70 chr3 116435103 116435445 -43164338 - RLTR9A LTR ERVK 0 368 1 1 1473 414 0 0 0 chr3 116435527 116435573 -43164210 + (TA)n Simple_repeat Simple_repeat 1 46 0 1 1473 1345 96 27 5 chr3 116435663 116435851 -43163932 + B2_Mm2 SINE B2 2 193 -2 1 1473 247 237 34 0 chr3 116435872 116435931 -43163852 - ID_B1 SINE B4 -30 194 134 1 1473 2699 98 50 42 chr3 116436544 116436694 -43163089 + Lx3C LINE L1 6514 6665 -311 1 1473 3792 51 25 4 chr3 116436694 116437166 -43162617 + RLTR45 LTR ERVK 1 482 0 1 1473 2699 98 50 42 chr3 116437166 116437471 -43162312 + Lx3C LINE L1 6666 6973 -3 1 1473 3428 22 22 0 chr3 116437476 116437877 -43161906 - IAPLTR2a LTR ERVK 0 411 2 1 1473 384 40 0 0 chr3 116437877 116437927 -43161856 + (TAAA)n Simple_repeat Simple_repeat 3 52 0 1 1473 355 300 111 51 chr3 116438068 116438419 -43161364 + MER34B-int LTR ERV1 2544 2915 -2021 1 1473 820 245 17 8 chr3 116438608 116438806 -43160977 + B3A SINE B2 9 212 -4 1 1473 232 281 16 0 chr3 116438872 116438936 -43160847 - ID4 SINE ID -10 73 9 1 1473 1302 26 0 0 chr3 116438943 116439097 -43160686 + (TCCA)n Simple_repeat Simple_repeat 3 156 0 1 1473 342 0 0 0 chr3 116439097 116439135 -43160648 + (TATG)n Simple_repeat Simple_repeat 2 39 0 1 1473 215 289 66 0 chr3 116439175 116439251 -43160532 - ID4_ SINE ID -2 81 1 1 1473 255 93 0 0 chr3 116439253 116439296 -43160487 + (T)n Simple_repeat Simple_repeat 1 43 0 1 1473 389 234 64 0 chr3 116439401 116439495 -43160288 - PB1D9 SINE Alu -16 104 5 1 1473 274 282 0 13 chr3 116439855 116439934 -43159849 + Lx8 LINE L1 6962 7039 -434 1 1473 1023 56 6 111 chr3 116440099 116440261 -43159522 - B1_Mm SINE Alu -2 145 1 1 1473 401 289 11 14 chr3 116440687 116440796 -43158987 - PB1 SINE Alu -17 110 2 1 1473 464 279 68 71 chr3 116440885 116441375 -43158408 + MER34B-int LTR ERV1 2887 3671 -1685 1 1473 276 287 20 41 chr3 116441519 116441617 -43158166 + B4A SINE B4 70 165 -127 1 1473 455 33 0 16 chr3 116442401 116442463 -43157320 + (TC)n Simple_repeat Simple_repeat 2 62 0 1 1473 728 259 5 45 chr3 116442508 116442710 -43157073 + B3A SINE B2 1 194 -4 1 1473 904 186 65 25 chr3 116442711 116442910 -43156873 + B3 SINE B2 3 209 -7 1 1473 212 189 0 0 chr3 116442964 116443001 -43156782 - ID4 SINE ID -32 51 15 1 1473 1655 32 0 0 chr3 116443335 116443523 -43156260 - B2_Mm1a SINE B2 -5 188 1 1 1473 558 89 0 0 chr3 116443739 116443829 -43155954 + (GA)n Simple_repeat Simple_repeat 2 91 0 1 1473 527 157 107 0 chr3 116443954 116444075 -43155708 - URR1A DNA MER1_type -12 214 81 1 1473 712 221 0 20 chr3 116444271 116444419 -43155364 + B1F SINE Alu 3 147 -2 1 1473 244 367 0 0 chr3 116446551 116446630 -43153153 - ID4 SINE ID 0 83 5 1 1473 838 42 246 0 chr3 116446976 116447094 -43152689 + B1_Mm SINE Alu 1 147 0 1 1473 347 256 33 0 chr3 116447348 116447438 -43152345 + ID_B1 SINE B4 9 101 -123 1 1473 951 135 14 0 chr3 116447491 116447639 -43152144 - B1_Mur4 SINE Alu 0 150 1 1 1473 682 228 0 13 chr3 116448083 116448234 -43151549 - B1F2 SINE Alu 0 149 1 1 1473 257 275 73 34 chr3 116448298 116448403 -43151380 - PB1D10 SINE Alu -8 112 2 1 1473 1321 101 11 0 chr3 116448460 116448639 -43151144 + B2_Mm1t SINE B2 2 182 -11 1 1473 310 74 17 69 chr3 116448702 116448760 -43151023 + B2_Mm2 SINE B2 47 101 -94 1 1473 26 0 0 0 chr3 116450070 116450096 -43149687 + AT_rich Low_complexity Low_complexity 1 26 0 1 1473 1139 63 0 14 chr3 116450405 116450550 -43149233 + B1_Mus1 SINE Alu 2 144 -4 1 1473 403 18 0 35 chr3 116450570 116450628 -43149155 + (CAA)n Simple_repeat Simple_repeat 2 57 0 1 1473 1282 82 41 0 chr3 116450647 116450818 -43148965 + B2_Mm1t SINE B2 2 179 -14 1 1473 319 127 13 34 chr3 116450864 116450931 -43148852 + B2_Mm2 SINE B2 46 116 -82 1 1473 324 0 0 0 chr3 116450947 116450983 -43148800 + (TAAA)n Simple_repeat Simple_repeat 2 37 0 1 1473 409 230 0 0 chr3 116451259 116451359 -43148424 - B1F2 SINE Alu -9 140 41 1 1473 339 263 121 0 chr3 116451439 116451538 -43148245 + PB1D10 SINE Alu 1 111 -6 1 1473 761 126 58 16 chr3 116451586 116451707 -43148076 + B1_Mus1 SINE Alu 5 130 -18 1 1473 249 218 0 35 chr3 116451729 116451786 -43147997 + B1_Mus2 SINE Alu 2 56 -91 1 1473 877 178 62 5 chr3 116451829 116452021 -43147762 + B3 SINE B2 14 216 0 1 1473 1193 177 10 0 chr3 116452303 116452506 -43147277 + B3 SINE B2 1 205 -11 1 1473 386 203 0 26 chr3 116452518 116452594 -43147189 - ID4_ SINE ID -6 77 4 1 1473 388 320 23 8 chr3 116452604 116452733 -43147050 - ID_B1 SINE B4 -12 212 82 1 1473 1388 71 6 6 chr3 116452742 116452925 -43146858 - B2_Mm2 SINE B2 -10 185 3 1 1473 1276 0 26 0 chr3 116452999 116453153 -43146630 + (TTTCC)n Simple_repeat Simple_repeat 5 162 0 1 1473 593 192 94 23 chr3 116453153 116453281 -43146502 - B1_Mur4 SINE Alu -13 137 1 1 1473 494 90 157 0 chr3 116453935 116454024 -43145759 - B3 SINE B2 -111 105 3 1 1473 681 199 135 12 chr3 116454202 116454365 -43145418 + B3 SINE B2 3 185 -31 1 1473 25 0 0 0 chr3 116454396 116454421 -43145362 + AT_rich Low_complexity Low_complexity 1 25 0 1 1473 1695 31 0 0 chr3 116455395 116455588 -43144195 - B2_Mm1a SINE B2 0 193 1 1 1473 1709 21 0 0 chr3 116455620 116455812 -43143971 + B2_Mm1a SINE B2 2 193 0 1 1473 441 271 82 38 chr3 116456611 116456795 -43142988 - B3A SINE B2 -2 196 5 1 1473 617 233 50 0 chr3 116456900 116457059 -43142724 + B3A SINE B2 3 169 -29 1 1473 531 245 105 39 chr3 116457290 116457443 -43142340 + RSINE1 SINE B4 3 165 0 1 1473 386 307 47 8 chr3 116457956 116458084 -43141699 + B1F2 SINE Alu 4 136 -13 1 1473 21 57 0 0 chr3 116458487 116458522 -43141261 + AT_rich Low_complexity Low_complexity 1 35 0 1 1473 1214 48 7 0 chr3 116458654 116458801 -43140982 + B1_Mus1 SINE Alu 1 148 0 1 1473 250 198 23 0 chr3 116459181 116459235 -43140548 + B1F2 SINE Alu 49 104 -45 1 1473 558 187 58 29 chr3 116459292 116459430 -43140353 + B1_Mur4 SINE Alu 9 150 0 1 1473 217 241 0 18 chr3 116460059 116460114 -43139669 + (TG)n Simple_repeat Simple_repeat 1 54 0 1 1473 509 217 101 0 chr3 116460480 116460609 -43139174 - B1_Mur3 SINE Alu -7 142 1 1 1473 591 233 9 0 chr3 116460613 116460729 -43139054 - PB1D10 SINE Alu 0 117 1 1 1473 778 167 176 11 chr3 116460779 116460955 -43138828 + B3 SINE B2 2 206 -10 1 1473 23 78 0 0 chr3 116461543 116461594 -43138189 + AT_rich Low_complexity Low_complexity 1 51 0 1 1473 771 189 77 58 chr3 116462050 116462258 -43137525 - B3 SINE B2 0 216 5 1 1473 506 233 32 40 chr3 116462411 116462536 -43137247 + B1_Mur1 SINE Alu 25 148 -1 1 1473 2666 122 29 44 chr3 116463332 116463814 -43135969 + IAPLTR2_Mm LTR ERVK 1 475 0 1 1473 3573 65 20 14 chr3 116463814 116464538 -43135245 + IAPEz-int LTR ERVK 8 662 -5819 1 1473 454 66 0 32 chr3 116464538 116464601 -43135182 + IAPEz-int LTR ERVK 1359 1419 -5062 1 1473 1793 130 4 4 chr3 116464590 116464852 -43134931 + IAPEz-int LTR ERVK 2236 2497 -5183 1 1473 953 80 24 0 chr3 116464847 116464972 -43134811 + IAPEz-int LTR ERVK 4783 4910 -2770 1 1473 26940 14 3 0 chr3 116464972 116467919 -43131864 + IAPEz-int LTR ERVK 3525 6481 0 1 1473 2642 124 29 44 chr3 116467919 116468401 -43131382 + IAPLTR2_Mm LTR ERVK 1 475 0 1 1473 787 157 0 0 chr3 116468407 116468541 -43131242 - B1_Mm SINE Alu 0 147 14 1 1473 23 0 0 0 chr3 116468544 116468567 -43131216 + AT_rich Low_complexity Low_complexity 1 23 0 1 1473 432 282 44 32 chr3 116468624 116468814 -43130969 - B3 SINE B2 -1 194 1 1 1473 195 69 0 0 chr3 116468860 116468889 -43130894 + (TG)n Simple_repeat Simple_repeat 1 29 0 1 1473 516 293 0 28 chr3 116468889 116469033 -43130750 - RSINE1 SINE B4 -24 141 2 1 1473 837 180 0 7 chr3 116469072 116469212 -43130571 - B1_Mur2 SINE Alu -8 141 3 1 1473 567 185 52 19 chr3 116469343 116469471 -43130312 + B3A SINE B2 23 152 -64 1 1473 2251 72 6 12 chr3 116469480 116469806 -43129977 + ORR1A2 LTR MaLR 4 327 0 1 1473 1100 72 0 0 chr3 116469840 116469978 -43129805 + B1_Mus2 SINE Alu 1 138 -9 1 1473 347 0 23 0 chr3 116469978 116470021 -43129762 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 1 1473 898 51 0 0 chr3 116470139 116470257 -43129526 + B1_Mus1 SINE Alu 29 146 -2 1 1473 279 0 0 0 chr3 116470257 116470288 -43129495 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1 1473 189 325 37 12 chr3 116470521 116470602 -43129181 - MER5A DNA MER1_type -69 120 38 1 1473 463 214 127 78 chr3 116470650 116470792 -43128991 - B1_Mur2 SINE Alu 0 149 1 1 1473 1212 34 14 0 chr3 116470811 116470958 -43128825 - B1_Mur4 SINE Alu 0 150 2 1 1473 413 252 76 122 chr3 116471280 116471437 -43128346 + RSINE1 SINE B4 2 151 -14 1 1473 1329 61 0 0 chr3 116471437 116471617 -43128166 + (CA)n Simple_repeat Simple_repeat 1 180 0 1 1473 413 252 76 122 chr3 116471617 116471631 -43128152 + RSINE1 SINE B4 152 165 0 1 1473 313 286 48 0 chr3 116472680 116472785 -43126998 + PB1D9 SINE Alu 1 110 -10 1 1473 21 71 0 0 chr3 116474543 116474585 -43125198 + AT_rich Low_complexity Low_complexity 1 42 0 1 1473 1369 76 0 31 chr3 116474601 116474792 -43124991 - B2_Mm2 SINE B2 -10 185 1 1 1473 594 234 92 49 chr3 116474934 116475118 -43124665 + ID_B1 SINE B4 25 216 -8 1 1473 1233 85 108 0 chr3 116476596 116476772 -43123011 + B2_Mm2 SINE B2 1 195 0 1 1473 21 0 0 0 chr3 116477336 116477357 -43122426 + AT_rich Low_complexity Low_complexity 1 21 0 1 1473 668 263 47 38 chr3 116477448 116477661 -43122122 - B3 SINE B2 0 216 2 1 1473 216 0 0 0 chr3 116477850 116477874 -43121909 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 1 1473 591 190 147 0 chr3 116477874 116477990 -43121793 - B1_Mur2 SINE Alu -12 137 5 1 1473 842 168 249 0 chr3 116478027 116478200 -43121583 - B3 SINE B2 0 216 1 1 1473 1305 101 26 21 chr3 116478370 116478563 -43121220 + B2_Mm2 SINE B2 1 194 -1 1 1473 475 300 35 6 chr3 116478568 116478721 -43121062 + ID_B1 SINE B4 78 247 -45 1 1473 372 281 26 9 chr3 116478817 116478932 -43120851 - PB1D10 SINE Alu 0 117 1 1 1473 720 212 0 7 chr3 116478950 116479088 -43120695 - B1_Mur1 SINE Alu 0 149 13 1 1473 637 253 88 31 chr3 116479087 116479279 -43120504 + B3 SINE B2 9 211 -5 1 1473 230 261 54 43 chr3 116479681 116479735 -43120048 - MTD LTR MaLR -4 355 301 1 1473 266 200 33 0 chr3 116479735 116479795 -43119988 + ORR1D2 LTR MaLR 1 62 -308 1 1473 354 269 9 19 chr3 116479780 116479886 -43119897 - MTD LTR MaLR -314 105 1 1 1473 817 262 0 5 chr3 116480040 116480228 -43119555 - B3A SINE B2 -10 188 2 1 1473 280 286 0 28 chr3 116480275 116480347 -43119436 - ID_B1 SINE B4 -67 157 88 1 1473 281 175 16 16 chr3 116480340 116480404 -43119379 - PB1D9 SINE Alu -25 95 32 1 1473 333 292 90 0 chr3 116480893 116481033 -43118750 - MIR SINE MIR -57 211 48 1 1473 510 274 68 0 chr3 116481773 116481919 -43117864 - B3A SINE B2 -35 163 8 1 1473 186 167 0 0 chr3 116482871 116482907 -43116876 + (CATA)n Simple_repeat Simple_repeat 3 38 0 1 1473 223 269 0 43 chr3 116483319 116483389 -43116394 + (CATATA)n Simple_repeat Simple_repeat 4 70 0 1 1473 403 318 48 0 chr3 116485038 116485164 -43114619 - RSINE1 SINE B4 -29 136 5 1 1473 334 234 71 41 chr3 116485178 116485276 -43114507 - B1F SINE Alu -7 142 42 1 1473 485 55 14 0 chr3 116486018 116486091 -43113692 + (TG)n Simple_repeat Simple_repeat 1 74 0 1 1473 210 71 0 0 chr3 116486426 116486454 -43113329 + (TC)n Simple_repeat Simple_repeat 1 28 0 1 1473 325 151 0 23 chr3 116486453 116486541 -43113242 + (CA)n Simple_repeat Simple_repeat 1 86 0 1 1473 523 203 77 35 chr3 116486554 116486697 -43113086 - B1_Mur2 SINE Alu 0 149 1 1 1473 231 276 20 136 chr3 116486569 116486716 -43113067 - MT2B LTR ERVL -320 281 152 1 1473 1309 158 10 0 chr3 116487690 116487899 -43111884 - B3 SINE B2 -5 211 1 1 1473 482 241 161 19 chr3 116488421 116488582 -43111201 - B3 SINE B2 -5 211 28 1 1473 332 214 48 67 chr3 116488729 116488834 -43110949 - PB1D10 SINE Alu -6 111 9 1 1473 316 294 0 19 chr3 116489087 116489191 -43110592 + MLT1A1 LTR MaLR 295 396 -12 1 1473 349 306 46 0 chr3 116489994 116490102 -43109681 - RSINE1 SINE B4 -5 160 48 1 1473 26 64 0 0 chr3 116490288 116490335 -43109448 + AT_rich Low_complexity Low_complexity 1 47 0 1 1473 29 0 0 0 chr3 116490728 116490757 -43109026 + AT_rich Low_complexity Low_complexity 1 29 0 1 1473 25 0 0 0 chr3 116490834 116490859 -43108924 + AT_rich Low_complexity Low_complexity 1 25 0 1 1473 894 139 28 0 chr3 116491830 116491974 -43107809 - B1_Mur4 SINE Alu -2 148 1 1 1473 435 281 7 97 chr3 116491974 116492128 -43107655 + B1F SINE Alu 10 149 0 1 1473 228 35 0 0 chr3 116492133 116492162 -43107621 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1 1473 226 293 12 35 chr3 116492330 116492415 -43107368 + MLT1J LTR MaLR 291 373 -139 1 1473 1130 82 0 7 chr3 116492522 116492670 -43107113 - B1_Mus1 SINE Alu 0 148 2 1 1473 498 244 23 5 chr3 116493334 116493477 -43106306 - B1F1 SINE Alu -1 148 2 1 1473 192 40 0 0 chr3 116493668 116493693 -43106090 + (TTTTTG)n Simple_repeat Simple_repeat 4 28 0 1 1473 525 256 16 0 chr3 116495215 116495340 -43104443 - ID_B1 SINE B4 -16 208 82 1 1473 1656 26 5 0 chr3 116495356 116495547 -43104236 - B2_Mm1t SINE B2 0 193 2 1 1473 201 39 0 0 chr3 116495590 116495616 -43104167 + (TTTA)n Simple_repeat Simple_repeat 1 26 0 1 1473 1127 53 0 0 chr3 116495616 116495766 -43104017 - B2_Mm2 SINE B2 -43 152 3 1 1473 657 51 31 0 chr3 116495766 116495864 -43103919 + (TC)n Simple_repeat Simple_repeat 1 101 0 1 1473 495 0 0 0 chr3 116495865 116495920 -43103863 + (TTCC)n Simple_repeat Simple_repeat 2 56 0 1 1473 678 174 38 51 chr3 116495921 116496078 -43103705 - B3A SINE B2 -43 155 1 1 1473 393 180 198 10 chr3 116496309 116496410 -43103373 + PB1D9 SINE Alu 1 120 0 1 1473 366 342 86 20 chr3 116497304 116497501 -43102282 - MER63A DNA AcHobo 0 210 1 1 1473 1084 218 169 19 chr3 116497780 116498094 -43101689 - Lx9 LINE L1 -72 7572 7212 1 1473 454 250 12 163 chr3 116498141 116498313 -43101470 + ID_B1 SINE B4 78 223 -1 1 1473 1645 26 16 0 chr3 116498328 116498518 -43101265 + B2_Mm1a SINE B2 1 193 0 1 1473 297 75 0 0 chr3 116498561 116498601 -43101182 + (A)n Simple_repeat Simple_repeat 1 40 0 1 1473 784 104 119 8 chr3 116498678 116498804 -43100979 + B1_Mur3 SINE Alu 5 144 -5 1 1473 483 234 137 7 chr3 116499030 116499176 -43100607 - RSINE1 SINE B4 0 165 1 1 1473 501 218 8 36 chr3 116499246 116499419 -43100364 + B4A SINE B4 130 292 0 1 1473 468 296 112 43 chr3 116499436 116499669 -43100114 + B4 SINE B4 8 256 -36 1 1473 984 76 27 7 chr3 116499662 116499808 -43099975 + B2_Mm2 SINE B2 47 195 0 1 1473 381 131 0 0 chr3 116499808 116499869 -43099914 + (GGA)n Simple_repeat Simple_repeat 1 61 0 1 1473 496 300 150 0 chr3 116500007 116500267 -43099516 + Tigger1 DNA MER2_type 123 421 -1997 1 1473 1574 286 194 60 chr3 116500395 116501596 -43098187 + Tigger1 DNA MER2_type 680 2041 -377 1 1473 418 217 72 92 chr3 116501784 116501936 -43097847 + B1F SINE Alu 1 149 0 2 1473 186 71 0 0 chr3 116501955 116501983 -43097800 + (TCTG)n Simple_repeat Simple_repeat 2 29 0 3 1473 319 244 118 49 chr3 116502028 116502167 -43097616 + B1F2 SINE Alu 7 149 0 4 1473 505 241 9 0 chr3 116502637 116502749 -43097034 + B3 SINE B2 91 203 -13 5 1473 21 0 0 0 chr3 116502781 116502802 -43096981 + AT_rich Low_complexity Low_complexity 1 21 0 6 1473 658 244 97 5 chr3 116502854 116503039 -43096744 - B3 SINE B2 -10 206 5 7 1473 528 222 134 23 chr3 116503046 116503217 -43096566 - B3A SINE B2 -7 191 2 8 1473 453 291 92 92 chr3 116503224 116503356 -43096427 - Charlie7 DNA MER1_type -293 2319 2199 9 1473 189 0 0 0 chr3 116503356 116503377 -43096406 + (CATA)n Simple_repeat Simple_repeat 2 22 0 1 1473 453 291 92 92 chr3 116503377 116503626 -43096157 - Charlie7 DNA MER1_type -414 2198 1938 9 1473 558 182 0 0 chr3 116503740 116503839 -43095944 + MER58A DNA MER1_type 57 155 -69 1 1473 465 252 0 20 chr3 116504161 116504262 -43095521 - B1_Mur2 SINE Alu -50 99 1 1 1473 264 338 0 0 chr3 116504361 116504435 -43095348 - ID4_ SINE ID -1 82 9 1 1473 650 234 58 44 chr3 116504964 116505170 -43094613 + B3 SINE B2 4 212 -4 1 1473 333 0 0 0 chr3 116505241 116505278 -43094505 + (TTCA)n Simple_repeat Simple_repeat 1 37 0 1 1473 842 187 0 0 chr3 116505279 116505418 -43094365 - B1_Mus2 SINE Alu -8 139 1 1 1473 234 0 0 0 chr3 116505432 116505458 -43094325 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 1 1473 777 180 143 32 chr3 116506186 116506375 -43093408 - B3 SINE B2 -1 215 6 1 1473 575 216 93 0 chr3 116506389 116506528 -43093255 - B4A SINE B4 -68 224 73 1 1473 616 124 35 26 chr3 116506594 116506710 -43093073 - B1_Mur2 SINE Alu -12 137 21 2 1473 971 139 110 34 chr3 116506821 116507030 -43092753 + URR1A DNA MER1_type 2 226 0 2 1473 650 223 35 21 chr3 116507142 116507284 -43092499 - B1_Mus1 SINE Alu 0 148 5 2 1473 369 60 0 0 chr3 116507392 116507417 -43092366 + (A)n Simple_repeat Simple_repeat 1 25 0 2 1473 1218 48 0 0 chr3 116507417 116507564 -43092219 + B1_Mus2 SINE Alu 1 147 0 2 1473 369 60 0 0 chr3 116507564 116507588 -43092195 + (A)n Simple_repeat Simple_repeat 1 24 0 2 1473 1243 106 10 46 chr3 116507600 116507797 -43091986 + B2_Mm2 SINE B2 1 190 -5 2 1473 204 40 0 0 chr3 116508655 116508680 -43091103 + (TAA)n Simple_repeat Simple_repeat 1 25 0 2 1473 379 268 0 0 chr3 116509360 116509442 -43090341 - ID4_ SINE ID 0 83 2 2 1473 273 29 0 0 chr3 116509997 116510031 -43089752 + (TG)n Simple_repeat Simple_repeat 2 35 0 2 1473 239 280 0 0 chr3 116510034 116510084 -43089699 - tRNA-Ala-GCY_ tRNA tRNA -9 66 17 3 1473 351 179 0 0 chr3 116510359 116510426 -43089357 + A-rich Low_complexity Low_complexity 1 67 0 3 1473 1334 227 44 14 chr3 116511465 116511809 -43087974 + MTD LTR MaLR 46 399 -20 3 1473 22 0 0 0 chr3 116511815 116511837 -43087946 + AT_rich Low_complexity Low_complexity 1 22 0 3 1473 191 274 0 99 chr3 116511837 116511918 -43087865 - MIR SINE MIR -105 157 85 3 1473 679 174 177 35 chr3 116512957 116513160 -43086623 - RLTR24 LTR ERV1 0 529 298 3 1473 936 82 13 70 chr3 116513374 116513466 -43086317 + B1_Mus1 SINE Alu 1 89 -59 3 1473 1445 163 63 48 chr3 116513466 116513782 -43086001 + RLTRETN_Mm LTR ERVK 2 322 0 3 1473 936 82 13 70 chr3 116513782 116513846 -43085937 + B1_Mus1 SINE Alu 90 148 0 3 1473 908 203 93 5 chr3 116513885 116514078 -43085705 + B3 SINE B2 2 211 -5 3 1473 634 247 94 87 chr3 116515978 116516266 -43083517 - B4A SINE B4 -1 291 2 3 1473 1516 64 0 16 chr3 116516299 116516490 -43083293 + B2_Mm1t SINE B2 1 188 -5 4 1473 604 262 13 13 chr3 116516544 116516695 -43083088 + B4 SINE B4 90 240 -52 4 1473 490 187 33 0 chr3 116516706 116516797 -43082986 + B1_Mur1 SINE Alu 50 143 -6 4 1473 902 258 69 74 chr3 116517402 116517491 -43082292 + MTE2a LTR MaLR 3 86 -293 4 1473 407 52 17 0 chr3 116517491 116517549 -43082234 + (TG)n Simple_repeat Simple_repeat 1 59 0 4 1473 902 258 69 74 chr3 116517549 116517836 -43081947 + MTE2a LTR MaLR 87 377 -2 4 1473 243 214 54 0 chr3 116518009 116518065 -43081718 - L1MB4 LINE L1 -147 6033 5975 4 1473 3988 208 71 27 chr3 116519473 116520433 -43079350 + Lx8 LINE L1 6335 7336 -137 4 1473 2670 8 2 239 chr3 116520456 116520937 -43078846 + IAPLTR1_Mm LTR ERVK 1 367 0 4 1473 8051 89 75 30 chr3 116520937 116522186 -43077597 + IAPEz-int LTR ERVK 8 1313 -5168 4 184 29627 18 1 0 chr3 116522185 116525454 -43074329 + IAPEz-int LTR ERVK 3210 6481 0 4 1474 2670 8 2 239 chr3 116525454 116525935 -43073848 + IAPLTR1_Mm LTR ERVK 1 367 0 4 1474 768 223 7 0 chr3 116525936 116526084 -43073699 + B3 SINE B2 3 151 -65 4 1474 1410 35 90 5 chr3 116526092 116526292 -43073491 - MTB LTR MaLR -2 398 182 4 1474 1194 41 0 20 chr3 116526317 116526467 -43073316 - B1_Mm SINE Alu 0 147 1 5 1474 791 269 66 5 chr3 116526472 116526670 -43073113 - B3 SINE B2 -6 210 1 5 1474 593 156 152 30 chr3 116526882 116527014 -43072769 - B1_Mur2 SINE Alu 0 149 2 5 1474 973 134 0 11 chr3 116527278 116527452 -43072331 + (GAAA)n Simple_repeat Simple_repeat 1 172 0 5 1474 302 286 61 0 chr3 116527773 116527871 -43071912 + B1F SINE Alu 4 107 -42 5 1474 21 57 0 0 chr3 116528072 116528107 -43071676 + AT_rich Low_complexity Low_complexity 1 35 0 5 1474 922 211 20 44 chr3 116528401 116528604 -43071179 - B3A SINE B2 0 198 1 5 1474 187 364 0 0 chr3 116529993 116530048 -43069735 + MER5A DNA MER1_type 15 69 -120 5 1474 766 202 0 15 chr3 116530056 116530187 -43069596 + B3 SINE B2 2 130 -86 5 1474 1137 113 0 0 chr3 116530345 116530567 -43069216 + (TTTC)n Simple_repeat Simple_repeat 1 222 0 5 1474 638 264 25 19 chr3 116530570 116530732 -43069051 - RSINE1 SINE B4 0 165 3 6 1474 260 70 0 23 chr3 116530797 116530841 -43068942 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 6 1474 281 237 7 175 chr3 116530960 116531103 -43068680 - PB1D7 SINE Alu 0 120 2 6 1474 229 167 42 0 chr3 116531111 116531159 -43068624 - B1F SINE Alu -58 91 42 6 1474 362 315 35 7 chr3 116531625 116531769 -43068014 - B1F SINE Alu 0 149 2 6 1474 25 51 0 0 chr3 116531805 116531844 -43067939 + AT_rich Low_complexity Low_complexity 1 39 0 6 1474 1196 55 0 7 chr3 116531979 116532125 -43067658 + B1_Mus2 SINE Alu 1 145 -2 6 1474 384 119 0 0 chr3 116532129 116532188 -43067595 + (A)n Simple_repeat Simple_repeat 1 59 0 6 1474 1527 160 97 78 chr3 116532467 116532839 -43066944 - RLTR30 LTR ERV1 0 379 1 6 1474 239 174 41 55 chr3 116533065 116533138 -43066645 + (CTAG)n Simple_repeat Simple_repeat 1 72 0 6 1474 240 143 0 23 chr3 116533414 116533448 -43066335 + Lx6 LINE L1 7307 7340 -120 7 1474 1222 104 35 0 chr3 116533448 116533621 -43066162 + B2_Mm1t SINE B2 1 179 -14 7 1474 401 178 150 17 chr3 116533726 116533846 -43065937 + Lx6 LINE L1 7325 7460 0 7 1474 1564 47 5 0 chr3 116533855 116534046 -43065737 + B2_Mm1a SINE B2 2 193 0 7 1474 225 276 92 0 chr3 116534162 116534238 -43065545 - ID4_ SINE ID 0 83 1 7 1474 285 244 88 16 chr3 116534238 116534354 -43065429 - B3A SINE B2 -19 179 53 7 1474 394 243 71 9 chr3 116534393 116534505 -43065278 - PB1D9 SINE Alu 0 120 2 7 1474 573 122 118 27 chr3 116534708 116534818 -43064965 + B1_Mur3 SINE Alu 23 142 -7 7 1474 200 200 0 0 chr3 116534818 116534858 -43064925 + (CCAA)n Simple_repeat Simple_repeat 4 43 0 7 1474 674 197 36 21 chr3 116534975 116535115 -43064668 + B1_Mur3 SINE Alu 5 146 -3 7 1474 239 310 0 0 chr3 116535188 116535259 -43064524 + Charlie2b DNA MER1_type 1782 1852 -930 7 1474 422 79 16 0 chr3 116535779 116535842 -43063941 + (GGGA)n Simple_repeat Simple_repeat 3 66 0 8 1474 213 216 0 0 chr3 116535859 116535896 -43063887 + ID4_ SINE ID 43 79 -4 8 1474 251 211 0 0 chr3 116536172 116536229 -43063554 + (TATG)n Simple_repeat Simple_repeat 4 60 0 8 1474 1079 112 0 6 chr3 116536235 116536406 -43063377 + (TCTA)n Simple_repeat Simple_repeat 4 173 0 8 1474 1716 240 59 29 chr3 116536802 116537386 -43062397 - RMER13A LTR ERVK -202 658 15 8 1474 1152 201 40 219 chr3 116537648 116537781 -43062002 - RLTR40 LTR ERVK -341 476 357 8 1474 1184 34 7 7 chr3 116537781 116537928 -43061855 - B1_Mm SINE Alu 0 147 1 8 1474 1152 201 40 219 chr3 116537928 116538109 -43061674 - RLTR40 LTR ERVK -461 356 231 8 1474 819 216 75 25 chr3 116538109 116538308 -43061475 + B3 SINE B2 2 210 -6 8 1474 1152 201 40 219 chr3 116538308 116538572 -43061211 - RLTR40 LTR ERVK -587 230 1 8 1474 369 330 132 5 chr3 116538584 116538788 -43060995 - MLT1A0 LTR MaLR -8 357 128 8 1474 1171 36 0 0 chr3 116539266 116539404 -43060379 - B1_Mus2 SINE Alu -9 138 1 8 1474 1160 220 99 89 chr3 116540138 116540360 -43059423 - MTD LTR MaLR 0 419 212 9 1474 324 0 0 0 chr3 116540360 116540396 -43059387 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 9 1474 825 150 8 0 chr3 116540396 116540529 -43059254 - B1_Mus2 SINE Alu -13 134 1 9 1474 1160 220 99 89 chr3 116540529 116540720 -43059063 - MTD LTR MaLR -208 211 2 9 1474 2045 131 25 12 chr3 116541077 116541402 -43058381 - ORR1B1 LTR MaLR 0 329 1 9 1474 976 214 10 5 chr3 116541724 116541931 -43057852 + RLTR19B LTR ERVK 508 715 0 9 1474 3427 209 136 71 chr3 116541931 116543054 -43056729 - ORR1B1-int LTR MaLR -313 1196 1 9 1474 2229 180 13 0 chr3 116543054 116543443 -43056340 - ORR1B1 LTR MaLR 0 394 1 9 1474 240 232 71 0 chr3 116543484 116543540 -43056243 + L1ME1 LINE L1 6030 6089 -90 9 1474 218 319 0 28 chr3 116543641 116543712 -43056071 - ID4_ SINE ID -1 82 14 9 1474 377 378 10 46 chr3 116543790 116543987 -43055796 - B4A SINE B4 -2 290 101 9 1474 1191 68 0 0 chr3 116544017 116544164 -43055619 + B1_Mus2 SINE Alu 1 147 0 9 1474 566 201 78 59 chr3 116544208 116544297 -43055486 + URR1B DNA MER1_type 2 100 -125 9 1474 2917 159 98 84 chr3 116544297 116544977 -43054806 - RMER6C LTR ERVK 0 690 1 1 1474 566 201 78 59 chr3 116544977 116545038 -43054745 + URR1B DNA MER1_type 101 155 -70 9 1474 1069 94 5 91 chr3 116545038 116545155 -43054628 + B2_Mm1t SINE B2 1 116 -77 1 1474 1200 35 0 20 chr3 116545155 116545290 -43054493 + B1_Mm SINE Alu 2 136 -11 1 1474 432 0 0 0 chr3 116545290 116545338 -43054445 + (GAAA)n Simple_repeat Simple_repeat 4 51 0 1 1474 1200 35 0 20 chr3 116545338 116545350 -43054433 + B1_Mm SINE Alu 137 146 -1 1 1474 1069 94 5 91 chr3 116545350 116545419 -43054364 + B2_Mm1t SINE B2 117 171 -22 1 1474 375 70 316 9 chr3 116545436 116545550 -43054233 + B2_Mm2 SINE B2 47 195 0 1 1474 415 145 48 0 chr3 116545542 116545625 -43054158 + URR1B DNA MER1_type 139 225 0 9 1474 528 262 91 14 chr3 116545702 116545896 -43053887 + B3A SINE B2 1 205 -11 1 1474 291 278 0 53 chr3 116545921 116546111 -43053672 + (CATA)n Simple_repeat Simple_repeat 1 180 0 1 1474 281 291 0 33 chr3 116546278 116546459 -43053324 + (CATA)n Simple_repeat Simple_repeat 2 176 0 1 1474 295 286 0 33 chr3 116546597 116546778 -43053005 + (CATA)n Simple_repeat Simple_repeat 2 176 0 1 1474 1216 22 0 0 chr3 116547255 116547392 -43052391 + B1_Mm SINE Alu 2 138 -9 1 1474 504 0 0 0 chr3 116547392 116547448 -43052335 + (CAA)n Simple_repeat Simple_repeat 2 57 0 1 1474 300 353 19 51 chr3 116548306 116548447 -43051336 + B4 SINE B4 95 230 -62 1 1474 591 210 0 8 chr3 116548447 116548567 -43051216 + B3 SINE B2 1 119 -97 1 1474 946 119 19 19 chr3 116548759 116548913 -43050870 + B2_Mm2 SINE B2 1 154 -41 1 1474 204 40 0 0 chr3 116548914 116548939 -43050844 + (TAAA)n Simple_repeat Simple_repeat 4 28 0 1 1474 419 265 0 73 chr3 116549571 116549681 -43050102 + PB1D9 SINE Alu 3 104 -16 1 1474 301 329 20 14 chr3 116549710 116549858 -43049925 + B1F2 SINE Alu 1 149 0 1 1474 441 244 89 10 chr3 116550262 116550425 -43049358 + ORR1D1 LTR MaLR 243 418 -1 1 1474 218 259 0 0 chr3 116550473 116550527 -43049256 - L3 LINE CR1 -2303 2186 2133 1 1474 203 262 33 0 chr3 116551433 116551494 -43048289 + (TCTG)n Simple_repeat Simple_repeat 2 64 0 1 1474 660 26 0 0 chr3 116551496 116551574 -43048209 + (TCTA)n Simple_repeat Simple_repeat 4 81 0 1 1474 468 287 23 0 chr3 116551899 116552028 -43047755 - RSINE1 SINE B4 -19 146 15 1 1474 315 96 0 0 chr3 116552393 116552445 -43047338 + (TG)n Simple_repeat Simple_repeat 1 52 0 1 1474 816 11 0 0 chr3 116552582 116552675 -43047108 + (TTC)n Simple_repeat Simple_repeat 2 94 0 1 1474 1228 244 86 67 chr3 116553351 116553781 -43046002 + MTD-int LTR MaLR 616 1053 -205 1 1474 595 191 0 51 chr3 116553780 116553918 -43045865 - B2_Mm2 SINE B2 -18 177 47 1 1474 1272 27 0 0 chr3 116553982 116554128 -43045655 - B1_Mus2 SINE Alu 0 147 2 1 1474 488 216 35 23 chr3 116554130 116554301 -43045482 + MTD-int LTR MaLR 1072 1244 -14 1 1474 1610 166 20 3 chr3 116554299 116554596 -43045187 + MTD LTR MaLR 14 315 -104 1 1474 1197 48 7 0 chr3 116555788 116555934 -43043849 + B1_Mm SINE Alu 1 147 0 1 1474 250 347 62 0 chr3 116556876 116557020 -43042763 - MIRb SINE MIR -78 190 38 1 1474 259 261 22 22 chr3 116557052 116557142 -43042641 - PB1D10 SINE Alu 0 117 28 1 1474 301 202 21 53 chr3 116557206 116557300 -43042483 - L1MB3 LINE L1 -290 5893 5803 1 1474 352 333 57 0 chr3 116557300 116557441 -43042342 + B1F2 SINE Alu 1 149 0 1 1474 425 255 71 31 chr3 116557473 116557627 -43042156 - L1MB3 LINE L1 -371 5813 5654 1 1474 3501 23 5 0 chr3 116557693 116558087 -43041696 - MTA_Mm LTR MaLR 0 396 1 1 1474 276 270 77 17 chr3 116558452 116558569 -43041214 + ORR1E LTR MaLR 64 187 -172 1 1474 240 182 0 0 chr3 116558592 116558636 -43041147 - MT2A LTR ERVL 0 533 490 1 1474 2457 147 32 8 chr3 116558696 116559169 -43040614 - MT2A LTR ERVL -46 487 4 1 1474 455 206 22 67 chr3 116559609 116559744 -43040039 + B1_Mur4 SINE Alu 1 129 -21 1 1474 1173 68 0 13 chr3 116559865 116560015 -43039768 - B1_Mus1 SINE Alu 0 148 1 1 1474 243 146 0 0 chr3 116560134 116560175 -43039608 + (TGG)n Simple_repeat Simple_repeat 1 41 0 1 1474 566 150 39 20 chr3 116560190 116560292 -43039491 - B1_Mur2 SINE Alu -1 148 45 1 1474 280 169 51 90 chr3 116560223 116560301 -43039482 - MT2B LTR ERVL -338 263 189 1 1474 189 121 0 0 chr3 116560991 116561024 -43038759 + (TC)n Simple_repeat Simple_repeat 2 34 0 1 1474 253 286 0 16 chr3 116561051 116561115 -43038668 - RSINE1 SINE B4 -99 66 4 1 1474 384 22 0 0 chr3 116561806 116561851 -43037932 + (TA)n Simple_repeat Simple_repeat 2 46 0 1 1474 1114 78 0 0 chr3 116561852 116561993 -43037790 - B1_Mus1 SINE Alu -5 143 3 1 1474 469 44 0 29 chr3 116562967 116563037 -43036746 + (TG)n Simple_repeat Simple_repeat 2 69 0 1 1474 780 178 0 0 chr3 116563716 116563851 -43035932 + B1_Mur4 SINE Alu 5 139 -11 1 1474 180 0 0 0 chr3 116563865 116563885 -43035898 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 1 1474 231 36 0 0 chr3 116563952 116563980 -43035803 + (A)n Simple_repeat Simple_repeat 1 28 0 1 1474 378 0 0 0 chr3 116564993 116565035 -43034748 + (TG)n Simple_repeat Simple_repeat 2 43 0 1 1474 1071 81 11 11 chr3 116565061 116565235 -43034548 + (TTCTC)n Simple_repeat Simple_repeat 5 178 0 1 1474 396 0 0 0 chr3 116565238 116565282 -43034501 + (TCTCCC)n Simple_repeat Simple_repeat 5 48 0 1 1474 652 219 0 0 chr3 116565557 116565676 -43034107 - B1_Mur2 SINE Alu -17 132 14 1 1474 261 0 0 0 chr3 116565710 116565739 -43034044 + (T)n Simple_repeat Simple_repeat 1 29 0 1 1474 484 243 10 0 chr3 116565869 116565972 -43033811 + RSINE1 SINE B4 45 148 -17 1 1474 1041 144 0 0 chr3 116566170 116566344 -43033439 + (TTTC)n Simple_repeat Simple_repeat 2 175 0 1 1474 431 212 61 0 chr3 116566350 116566449 -43033334 - PB1D9 SINE Alu -6 114 10 1 1474 419 286 88 0 chr3 116566669 116566823 -43032960 - Charlie8 DNA MER1_type -2196 232 59 1 1474 1207 275 54 9 chr3 116566830 116567179 -43032604 - Lx8 LINE L1 -359 7114 6750 1 1474 678 249 103 23 chr3 116567242 116567456 -43032327 + Lx8 LINE L1 7232 7462 -11 1 1474 366 226 0 70 chr3 116567543 116567657 -43032126 - Charlie1a DNA MER1_type -18 1437 1332 1 1474 490 203 89 41 chr3 116567658 116567781 -43032002 + B1F SINE Alu 1 129 -20 1 1474 314 33 0 130 chr3 116567784 116567853 -43031930 + T-rich Low_complexity Low_complexity 1 60 0 1 1474 208 261 0 0 chr3 116568001 116568047 -43031736 + (TATG)n Simple_repeat Simple_repeat 1 46 0 1 1474 2159 172 17 24 chr3 116568057 116568467 -43031316 - MTB_Mm LTR MaLR 0 407 1 1 1474 225 0 0 0 chr3 116568477 116568502 -43031281 + (TCTG)n Simple_repeat Simple_repeat 2 26 0 1 1474 230 0 33 0 chr3 116568699 116568729 -43031054 + (TCCC)n Simple_repeat Simple_repeat 2 32 0 1 1474 860 44 9 0 chr3 116568730 116568843 -43030940 + (TTTC)n Simple_repeat Simple_repeat 3 116 0 1 1474 719 159 8 8 chr3 116568843 116568970 -43030813 - B1_Mm SINE Alu -12 135 9 1 1474 394 258 29 79 chr3 116568876 116569015 -43030768 - MT2B LTR ERVL -344 257 126 1 1474 434 294 14 49 chr3 116569089 116569232 -43030551 - ID_B1 SINE B4 -2 222 85 1 1474 644 132 114 0 chr3 116569665 116569779 -43030004 - B1_Mus2 SINE Alu 0 147 21 1 1474 622 287 60 15 chr3 116570694 116570963 -43028820 + B4A SINE B4 2 282 -10 1 1474 666 271 50 55 chr3 116571115 116571334 -43028449 - ID_B1 SINE B4 -5 219 2 1 1474 471 214 0 0 chr3 116571639 116571723 -43028060 - B1_Mur3 SINE Alu -61 88 5 1 1474 218 220 0 0 chr3 116571818 116571868 -43027915 - B1_Mur2 SINE Alu -8 141 92 1 1474 975 130 17 6 chr3 116571869 116572047 -43027736 + CT-rich Low_complexity Low_complexity 1 180 0 1 1474 548 131 0 29 chr3 116572047 116572104 -43027679 + polypyrimidine Low_complexity Low_complexity 46 101 0 1 1474 1282 51 6 17 chr3 116572104 116572284 -43027499 + (TTTC)n Simple_repeat Simple_repeat 1 178 0 1 1474 548 131 0 29 chr3 116572284 116572328 -43027455 + polypyrimidine Low_complexity Low_complexity 3 45 0 1 1474 1085 123 6 0 chr3 116572340 116572519 -43027264 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 1 1474 519 17 0 0 chr3 116572527 116572587 -43027196 + (TTTC)n Simple_repeat Simple_repeat 3 62 0 1 1474 1224 35 0 0 chr3 116572589 116572731 -43027052 - B1_Mus1 SINE Alu -6 142 1 1 1474 325 220 45 0 chr3 116572734 116572817 -43026966 - B1_Mur2 SINE Alu -50 99 5 1 1474 396 250 126 14 chr3 116573784 116573927 -43025856 - B3A SINE B2 0 216 58 1 1474 213 132 0 0 chr3 116573965 116574003 -43025780 + (TTTA)n Simple_repeat Simple_repeat 3 40 0 1 1474 259 232 11 89 chr3 116574388 116574478 -43025305 - Tigger16a DNA Tigger -66 867 785 1 1474 586 183 8 42 chr3 116574566 116574686 -43025097 + B3 SINE B2 2 117 -99 1 1474 616 169 74 87 chr3 116574773 116574922 -43024861 + B1_Mur4 SINE Alu 3 149 -1 1 1474 1434 79 5 21 chr3 116574925 116575119 -43024664 + B2_Mm1a SINE B2 2 192 -1 1 1474 210 160 0 0 chr3 116575539 116575589 -43024194 + A-rich Low_complexity Low_complexity 1 50 0 1 1474 405 0 0 0 chr3 116575663 116575708 -43024075 + (TCTA)n Simple_repeat Simple_repeat 2 46 0 1 1474 751 200 14 22 chr3 116575715 116575853 -43023930 - B1_Mur3 SINE Alu -11 138 2 1 1474 327 223 28 102 chr3 116575857 116575997 -43023786 - B3A SINE B2 0 216 85 1 1474 590 121 24 1 chr3 116575997 116576103 -43023680 + MT2B LTR ERVL 1 109 -424 1 1474 540 219 24 0 chr3 116576150 116576273 -43023510 + MT2B LTR ERVL 87 212 -321 1 1474 2369 168 163 18 chr3 116576283 116576902 -43022881 + MERVL_2A-int LTR ERVL 152 894 -4867 1 1474 6494 130 67 42 chr3 116576908 116577066 -43022717 + MERVL_2A-int LTR ERVL 1605 1756 -4005 1 1474 1359 61 61 0 chr3 116577066 116577247 -43022536 - B2_Mm2 SINE B2 -2 193 2 1 1474 6494 137 181 24 chr3 116577247 116578893 -43020890 + MERVL_2A-int LTR ERVL 1757 3672 -2089 1 1474 309 26 0 0 chr3 116578893 116578931 -43020852 + (CA)n Simple_repeat Simple_repeat 2 39 0 1 1474 6734 135 20 56 chr3 116578951 116579461 -43020322 + MERVL_2A-int LTR ERVL 3971 4478 -1283 1 1474 1210 41 0 0 chr3 116579461 116579607 -43020176 + B1_Mm SINE Alu 2 147 0 1 1474 6734 135 20 56 chr3 116579607 116580204 -43019579 + MERVL_2A-int LTR ERVL 4479 5038 -723 1 1474 302 200 0 0 chr3 116580222 116580277 -43019506 + B1_Mus2 SINE Alu 1 55 -92 1 1474 819 156 7 39 chr3 116580328 116580463 -43019320 + B1_Mur4 SINE Alu 3 137 -13 1 1474 450 0 0 0 chr3 116580463 116580513 -43019270 + (CCAA)n Simple_repeat Simple_repeat 2 51 0 1 1474 819 156 7 39 chr3 116580513 116580530 -43019253 + B1_Mur4 SINE Alu 138 150 0 1 1474 462 206 0 11 chr3 116580766 116580859 -43018924 - B1_Mur1 SINE Alu -6 143 52 2 1474 23 33 0 0 chr3 116581395 116581425 -43018358 + AT_rich Low_complexity Low_complexity 1 30 0 2 1474 480 159 248 0 chr3 116581425 116581437 -43018346 - B1_Mus1 SINE Alu -1 147 132 2 1474 1932 125 9 43 chr3 116581437 116581504 -43018279 - Lx4A LINE L1 -1 7057 6991 2 1474 1203 42 0 0 chr3 116581504 116581646 -43018137 - B1_Mm SINE Alu -5 142 1 2 1474 1932 125 9 43 chr3 116581646 116581904 -43017879 - Lx4A LINE L1 -68 6990 6744 2 1474 480 159 248 0 chr3 116581904 116582004 -43017779 - B1_Mus1 SINE Alu -17 131 8 2 1474 436 189 54 45 chr3 116582389 116582500 -43017283 + PB1D10 SINE Alu 6 117 0 2 1474 1362 82 11 21 chr3 116582557 116582745 -43017038 - B2_Mm1t SINE B2 -5 188 3 2 1474 502 244 22 22 chr3 116582994 116583128 -43016655 + B1F1 SINE Alu 8 141 -8 2 1474 297 329 0 0 chr3 116583142 116583224 -43016559 + ID4_ SINE ID 2 83 0 2 1474 540 0 0 0 chr3 116583348 116583408 -43016375 + (TCTA)n Simple_repeat Simple_repeat 3 62 0 2 1474 819 107 0 0 chr3 116583445 116583567 -43016216 - B2_Mm2 SINE B2 -72 123 2 2 1474 26 0 0 0 chr3 116584068 116584094 -43015689 + AT_rich Low_complexity Low_complexity 1 26 0 2 1474 1217 68 0 0 chr3 116584094 116584241 -43015542 - B1_Mm SINE Alu 0 147 1 2 1474 775 120 24 0 chr3 116584247 116584372 -43015411 + B1_Mus1 SINE Alu 21 148 0 2 1474 432 0 0 0 chr3 116584430 116584478 -43015305 + (TG)n Simple_repeat Simple_repeat 2 49 0 2 1474 261 163 0 0 chr3 116584480 116584529 -43015254 + GA-rich Low_complexity Low_complexity 3 51 0 2 1474 267 151 0 70 chr3 116584565 116584622 -43015161 - RSINE1 SINE B4 -40 125 73 2 1474 449 257 9 17 chr3 116584881 116584996 -43014787 - B1F2 SINE Alu -1 148 35 2 1474 198 0 0 0 chr3 116585075 116585097 -43014686 + (C)n Simple_repeat Simple_repeat 1 22 0 2 1474 25 51 0 0 chr3 116586335 116586374 -43013409 + AT_rich Low_complexity Low_complexity 1 39 0 2 1474 454 311 0 0 chr3 116586398 116586504 -43013279 + B1F2 SINE Alu 1 106 -43 2 1474 478 215 0 21 chr3 116586505 116586600 -43013183 - URR1B DNA MER1_type -131 94 2 2 1474 576 204 179 6 chr3 116586660 116586828 -43012955 + B3A SINE B2 2 198 0 2 1474 21 0 0 0 chr3 116588917 116588938 -43010845 + AT_rich Low_complexity Low_complexity 1 21 0 2 1474 258 105 0 0 chr3 116588952 116588990 -43010793 + (CAAAA)n Simple_repeat Simple_repeat 4 41 0 2 1474 260 270 16 0 chr3 116589048 116589111 -43010672 + PB1D10 SINE Alu 10 73 -44 2 1474 345 62 0 0 chr3 116589144 116589192 -43010591 + (CAAAA)n Simple_repeat Simple_repeat 2 49 0 2 1474 207 0 0 0 chr3 116589192 116589215 -43010568 + (CAAA)n Simple_repeat Simple_repeat 1 23 0 2 1474 278 295 31 31 chr3 116589346 116589444 -43010339 - MARNA DNA Mariner -131 455 358 2 1474 206 233 80 27 chr3 116589754 116589829 -43009954 - L3b LINE CR1 -208 274 196 2 1474 670 175 50 21 chr3 116590170 116590310 -43009473 - B1_Mur1 SINE Alu -3 146 3 2 1474 536 291 140 37 chr3 116590699 116590999 -43008784 - MER21B LTR ERV1 -168 695 365 2 1474 1009 67 0 0 chr3 116591011 116591146 -43008637 - B1_Mus1 SINE Alu 0 148 14 2 1474 1079 86 0 84 chr3 116591157 116591335 -43008448 - L1_Mus1 LINE L1 0 6567 6405 2 1474 1017 175 262 18 chr3 116591684 116592016 -43007767 + Lx9 LINE L1 7126 7538 -106 2 1474 6288 40 4 7 chr3 116592636 116593393 -43006390 - L1Md_F2 LINE L1 -14 6568 5814 2 1474 357 235 41 0 chr3 116593412 116593510 -43006273 - B1_Mur1 SINE Alu -9 140 39 2 1474 213 65 0 0 chr3 116593513 116593544 -43006239 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2 1474 424 233 0 104 chr3 116593545 116593679 -43006104 - PB1D9 SINE Alu 0 120 1 2 1474 237 308 158 0 chr3 116595070 116595190 -43004593 - LTR87 LTR ERVL? -99 525 387 2 1474 705 197 7 26 chr3 116595471 116595622 -43004161 - B1_Mur2 SINE Alu 0 149 2 2 1474 1098 229 142 15 chr3 116595808 116596132 -43003651 - MTD LTR MaLR -54 365 1 2 1474 417 86 0 0 chr3 116596444 116596502 -43003281 + (TG)n Simple_repeat Simple_repeat 1 58 0 2 1474 399 228 226 8 chr3 116596506 116596630 -43003153 - RSINE1 SINE B4 -14 151 1 2 1474 1121 82 7 0 chr3 116596729 116596876 -43002907 - B1_Mus1 SINE Alu 0 148 1 2 1474 1093 252 7 19 chr3 116597035 116597306 -43002477 + Lx7 LINE L1 6980 7247 -449 2 1474 533 216 144 0 chr3 116597445 116597570 -43002213 + B1_Mur1 SINE Alu 2 144 -5 2 1474 350 146 246 1 chr3 116597668 116597750 -43002033 - B1_Mus1 SINE Alu -29 120 18 2 1474 183 80 0 0 chr3 116597750 116597775 -43002008 + (CCA)n Simple_repeat Simple_repeat 2 26 0 2 1474 408 220 30 10 chr3 116597797 116597898 -43001885 - B3 SINE B2 0 216 114 2 1474 231 266 101 0 chr3 116598222 116598301 -43001482 - L1M6 LINE L1 -4607 1889 1803 2 1474 184 293 95 48 chr3 116599256 116599403 -43000380 + MIR SINE MIR 88 241 -21 2 1474 518 229 61 61 chr3 116599858 116600021 -42999762 - RSINE1 SINE B4 0 165 3 2 1474 803 217 116 5 chr3 116600666 116600716 -42999067 - B3 SINE B2 -5 211 161 2 1474 378 0 0 0 chr3 116600716 116600758 -42999025 + (TG)n Simple_repeat Simple_repeat 2 43 0 2 1474 803 217 116 5 chr3 116600758 116600897 -42998886 - B3 SINE B2 -56 160 3 2 1474 180 0 0 0 chr3 116601112 116601132 -42998651 + (TG)n Simple_repeat Simple_repeat 1 20 0 2 1474 189 94 0 0 chr3 116601308 116601340 -42998443 + (TTC)n Simple_repeat Simple_repeat 2 33 0 2 1474 23 0 0 0 chr3 116601354 116601377 -42998406 + AT_rich Low_complexity Low_complexity 1 23 0 2 1474 662 104 0 0 chr3 116601399 116601495 -42998288 - B2_Mm2 SINE B2 -94 101 6 2 1474 186 43 0 0 chr3 116601758 116601781 -42998002 + (CACAG)n Simple_repeat Simple_repeat 1 23 0 2 1474 538 163 0 0 chr3 116602541 116602633 -42997150 - B3A SINE B2 -105 93 2 2 1474 856 98 34 11 chr3 116602915 116603090 -42996693 + (CA)n Simple_repeat Simple_repeat 1 179 0 2 1474 909 276 53 19 chr3 116603132 116603450 -42996333 - Lx9 LINE L1 -203 7441 7113 2 1474 413 254 69 8 chr3 116604367 116604498 -42995285 - B1F SINE Alu -2 147 9 2 1474 325 171 14 14 chr3 116604679 116604750 -42995033 - ID4 SINE ID -9 74 4 2 1474 22 88 0 0 chr3 116604843 116604900 -42994883 + AT_rich Low_complexity Low_complexity 1 57 0 2 1474 418 207 24 6 chr3 116604931 116605101 -42994682 + (TA)n Simple_repeat Simple_repeat 1 173 0 2 1474 283 146 0 0 chr3 116605101 116605149 -42994634 - B1_Mus1 SINE Alu -100 48 1 2 1474 427 271 157 25 chr3 116605401 116605605 -42994178 + B4A SINE B4 1 231 -61 2 1474 321 231 26 0 chr3 116606399 116606477 -42993306 + L1MEg LINE L1 1882 1961 -4123 2 1474 605 246 39 0 chr3 116606490 116606620 -42993163 - ID_B1 SINE B4 -11 213 79 2 1474 468 48 0 0 chr3 116606747 116606810 -42992973 + (CA)n Simple_repeat Simple_repeat 1 63 0 2 1474 948 84 0 0 chr3 116607379 116607510 -42992273 + (TC)n Simple_repeat Simple_repeat 2 132 0 2 1474 215 295 26 0 chr3 116607948 116608026 -42991757 + ID4_ SINE ID 2 81 -2 2 1474 364 220 15 41 chr3 116608287 116608411 -42991372 + Lx4B LINE L1 6877 7055 -3 2 1474 664 126 8 40 chr3 116608441 116608565 -42991218 + B1_Mur3 SINE Alu 28 147 -2 2 1474 1209 265 112 29 chr3 116608588 116609113 -42990670 - Lx8 LINE L1 -29 7444 6876 2 1474 689 330 78 14 chr3 116610610 116611043 -42988740 + L1MB5 LINE L1 5676 6136 -38 2 1474 381 20 20 0 chr3 116611782 116611833 -42987950 - ORR1A2 LTR MaLR 0 326 275 2 1474 198 0 0 0 chr3 116611835 116611857 -42987926 + (T)n Simple_repeat Simple_repeat 1 22 0 2 1474 2102 68 4 0 chr3 116612529 116612810 -42986973 - ORR1A2 LTR MaLR -45 282 1 2 1474 518 299 67 34 chr3 116612858 116613175 -42986608 + L1M4 LINE L1 4314 4646 -1500 2 1474 577 210 24 16 chr3 116613246 116613372 -42986411 - B3A SINE B2 -71 127 1 2 1474 366 330 121 49 chr3 116613442 116613587 -42986196 + L1M4 LINE L1 4710 4855 -1291 2 1474 884 214 55 20 chr3 116613587 116613787 -42985996 - B3 SINE B2 -8 208 2 2 1474 366 330 121 49 chr3 116613787 116614030 -42985753 + L1M4 LINE L1 4856 5126 -1020 2 1474 221 255 0 68 chr3 116614073 116614132 -42985651 + B4 SINE B4 77 131 -161 2 1474 317 216 81 0 chr3 116614091 116614160 -42985623 + B1F SINE Alu 6 80 -69 2 1474 1766 190 55 55 chr3 116614160 116614494 -42985289 - MTC LTR MaLR -3 418 76 2 1474 3457 96 54 10 chr3 116614494 116614998 -42984785 - L1Md_F2 LINE L1 0 6582 6057 2 1474 1766 190 55 55 chr3 116614998 116615081 -42984702 - MTC LTR MaLR -346 75 1 2 1474 436 301 191 39 chr3 116615482 116615924 -42983859 + L1MC3 LINE L1 6877 7372 -413 2 1474 203 235 0 0 chr3 116615925 116615976 -42983807 + (CATATA)n Simple_repeat Simple_repeat 2 52 0 2 1474 346 151 3 9 chr3 116615982 116616068 -42983715 - MTD LTR MaLR -8 411 316 2 1474 186 103 0 0 chr3 116616104 116616133 -42983650 + (CA)n Simple_repeat Simple_repeat 2 30 0 2 1474 451 272 26 26 chr3 116616168 116616319 -42983464 + L1MC3 LINE L1 7412 7562 -223 2 1474 214 139 47 0 chr3 116616419 116616462 -42983321 + (CAGA)n Simple_repeat Simple_repeat 2 46 0 2 1474 228 67 0 0 chr3 116616463 116616493 -42983290 + (GGGAGA)n Simple_repeat Simple_repeat 6 35 0 2 1474 219 176 0 19 chr3 116616506 116616558 -42983225 + (CAGA)n Simple_repeat Simple_repeat 4 54 0 2 1474 2242 159 8 3 chr3 116616811 116617176 -42982607 + ORR1B2 LTR MaLR 1 367 0 2 1474 391 221 147 0 chr3 116617235 116617330 -42982453 - PB1D10 SINE Alu -8 109 1 2 1474 188 227 122 22 chr3 116617539 116617629 -42982154 - MIR3 SINE MIR -47 161 63 2 1474 6302 38 5 0 chr3 116618509 116619250 -42980533 - L1Md_F2 LINE L1 -1 6581 5837 2 1474 636 199 172 54 chr3 116619577 116619763 -42980020 - B3 SINE B2 -6 210 3 2 1474 407 270 44 18 chr3 116619939 116620050 -42979733 - B4 SINE B4 -10 282 169 2 1474 2002 179 83 40 chr3 116620050 116620579 -42979204 + RLTR31_Mm LTR ERVK 1 552 -9 3 1474 22 0 0 0 chr3 116621944 116621966 -42977817 + AT_rich Low_complexity Low_complexity 1 22 0 3 1474 225 119 0 0 chr3 116623535 116623577 -42976206 + (TCTCTG)n Simple_repeat Simple_repeat 6 47 0 3 1474 649 342 30 8 chr3 116623605 116623870 -42975913 - B4A SINE B4 -21 271 1 3 1474 522 0 0 0 chr3 116624042 116624100 -42975683 + (TATATG)n Simple_repeat Simple_repeat 4 61 0 3 1474 1686 26 0 0 chr3 116624224 116624413 -42975370 - B2_Mm1a SINE B2 -3 190 2 3 1474 22 0 0 0 chr3 116625957 116625979 -42973804 + AT_rich Low_complexity Low_complexity 1 22 0 3 1474 356 179 50 109 chr3 116627352 116627471 -42972312 + MT2B LTR ERVL 153 264 -337 3 1474 833 123 8 0 chr3 116627371 116627501 -42972282 + B1_Mur3 SINE Alu 14 144 -5 3 1474 431 272 36 30 chr3 116627568 116627735 -42972048 + B3 SINE B2 41 208 -8 3 1474 1041 228 0 0 chr3 116628182 116628388 -42971395 - B3 SINE B2 -6 210 5 3 1474 318 322 76 34 chr3 116629305 116629599 -42970184 + RSINE1 SINE B4 1 274 -18 3 1474 723 92 0 0 chr3 116629601 116629710 -42970073 + (CA)n Simple_repeat Simple_repeat 1 109 0 3 1474 315 102 48 53 chr3 116629726 116629958 -42969825 + (CATA)n Simple_repeat Simple_repeat 1 231 0 3 1474 666 37 0 0 chr3 116629958 116630039 -42969744 + (CA)n Simple_repeat Simple_repeat 2 82 0 3 1474 358 281 33 58 chr3 116630835 116630956 -42968827 + MTEa LTR MaLR 1 118 -261 3 1474 481 226 11 0 chr3 116630988 116631165 -42968618 + CT-rich Low_complexity Low_complexity 2 180 0 3 1474 387 275 80 37 chr3 116631169 116631326 -42968457 + MTEa LTR MaLR 202 377 -2 3 1474 222 261 56 22 chr3 116631428 116631518 -42968265 + PB1D10 SINE Alu 2 94 -23 3 1474 536 40 13 26 chr3 116631543 116631620 -42968163 + B1_Mur4 SINE Alu 66 141 -9 3 1474 554 239 0 63 chr3 116631649 116631792 -42967991 - B1_Mur2 SINE Alu -14 135 2 3 1474 256 309 160 29 chr3 116632565 116632767 -42967016 + MIRc SINE MIR 2 218 -50 3 1474 269 379 39 15 chr3 116633194 116633400 -42966383 - MER58C DNA MER1_type -4 211 1 3 1474 257 280 30 0 chr3 116633410 116633510 -42966273 + (TA)n Simple_repeat Simple_repeat 2 104 0 3 1474 185 406 0 15 chr3 116633841 116633976 -42965807 - L2 LINE L2 -714 2705 2573 3 1474 503 109 0 21 chr3 116633982 116634076 -42965707 + (AGGGGG)n Simple_repeat Simple_repeat 4 95 0 3 1474 395 279 12 0 chr3 116634374 116634460 -42965323 + RSINE1 SINE B4 60 146 -19 3 1474 414 273 34 14 chr3 116635845 116635982 -42963801 + MER20 DNA MER1_type 2 154 -65 3 1474 745 230 78 20 chr3 116636289 116636493 -42963290 + B3 SINE B2 1 216 0 3 1474 281 304 0 0 chr3 116636523 116636615 -42963168 + (TA)n Simple_repeat Simple_repeat 1 92 0 3 1474 499 281 21 21 chr3 116638008 116638150 -42961633 - B1F2 SINE Alu -7 142 1 3 1474 27 0 0 0 chr3 116638851 116638878 -42960905 + AT_rich Low_complexity Low_complexity 1 27 0 3 1474 764 164 0 35 chr3 116638880 116639025 -42960758 - B1_Mur3 SINE Alu 0 149 10 3 1474 1043 106 112 0 chr3 116639182 116639342 -42960441 + B2_Mm1t SINE B2 2 179 -14 3 1474 314 170 0 0 chr3 116639375 116639428 -42960355 + B2_Mm2 SINE B2 49 101 -94 3 1474 24 32 0 0 chr3 116639451 116639482 -42960301 + AT_rich Low_complexity Low_complexity 1 31 0 3 1474 260 333 33 75 chr3 116639500 116639620 -42960163 + PB1D7 SINE Alu 6 120 0 3 1474 456 227 52 0 chr3 116640659 116640756 -42959027 + B1_Mur1 SINE Alu 21 122 -27 3 1474 255 125 0 0 chr3 116640760 116640800 -42958983 + (GGA)n Simple_repeat Simple_repeat 3 42 0 3 1474 3713 133 45 50 chr3 116641038 116641732 -42958051 + RMER6C LTR ERVK 1 690 0 3 1474 207 0 0 0 chr3 116642948 116642971 -42956812 + (TG)n Simple_repeat Simple_repeat 1 23 0 3 1474 329 162 15 0 chr3 116643044 116643112 -42956671 + CT-rich Low_complexity Low_complexity 1 69 0 3 1474 1092 106 0 0 chr3 116643114 116643275 -42956508 + (TTTC)n Simple_repeat Simple_repeat 2 162 0 3 1474 198 247 130 0 chr3 116645147 116645224 -42954559 + MIR SINE MIR 156 242 -20 3 1474 225 245 136 87 chr3 116645442 116645545 -42954238 - PB1D10 SINE Alu -7 110 3 3 1474 279 272 148 0 chr3 116645474 116645555 -42954228 - ID_B1 SINE B4 -58 166 74 3 1474 423 290 97 97 chr3 116645634 116645705 -42954078 - B4A SINE B4 0 292 218 3 1474 210 37 0 0 chr3 116645705 116645732 -42954051 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 3 1474 423 290 97 97 chr3 116645732 116645908 -42953875 - B4A SINE B4 -75 217 46 3 1474 637 276 77 21 chr3 116645920 116646234 -42953549 + MTD LTR MaLR 6 387 -32 3 1474 197 301 53 21 chr3 116646370 116646468 -42953315 - MIR3 SINE MIR -54 154 60 3 1474 213 175 0 0 chr3 116647399 116647439 -42952344 + (CTA)n Simple_repeat Simple_repeat 1 40 0 3 1474 435 288 19 24 chr3 116648748 116648947 -42950836 + B4A SINE B4 1 230 -62 3 1474 1661 270 28 19 chr3 116648947 116649313 -42950470 + Lx8 LINE L1 6631 6996 -477 3 1474 2315 150 88 0 chr3 116649313 116649700 -42950083 + MTC LTR MaLR 1 421 0 3 1474 1661 270 28 19 chr3 116649700 116649805 -42949978 + Lx8 LINE L1 6997 7106 -367 3 1474 813 286 68 0 chr3 116650261 116650509 -42949274 + Lx8 LINE L1 7086 7350 -123 3 1474 22 0 0 0 chr3 116650625 116650647 -42949136 + AT_rich Low_complexity Low_complexity 1 22 0 3 1474 351 0 0 0 chr3 116650731 116650770 -42949013 + (CA)n Simple_repeat Simple_repeat 1 39 0 3 1474 264 246 14 28 chr3 116651835 116651906 -42947877 - B4A SINE B4 0 292 223 3 1474 487 274 65 13 chr3 116651940 116652095 -42947688 - RSINE1 SINE B4 0 165 3 3 1474 734 249 158 5 chr3 116652095 116652293 -42947490 - B4A SINE B4 -62 230 2 3 1474 219 263 13 26 chr3 116652507 116652563 -42947220 + ID4 SINE ID 3 57 -26 3 1474 1713 104 208 23 chr3 116652563 116652693 -42947090 - RMER17C LTR ERVK 0 410 282 3 1474 483 18 0 0 chr3 116652693 116652749 -42947034 + (GTATG)n Simple_repeat Simple_repeat 3 58 0 3 1474 1713 104 208 23 chr3 116652749 116652823 -42946960 - RMER17C LTR ERVK -129 281 169 3 1474 1314 78 0 0 chr3 116652823 116653003 -42946780 + (GGAGAA)n Simple_repeat Simple_repeat 1 180 0 3 1474 1713 104 208 23 chr3 116653003 116653143 -42946640 - RMER17C LTR ERVK -242 168 1 3 1474 219 263 13 26 chr3 116653143 116653164 -42946619 + ID4 SINE ID 58 79 -4 3 1474 192 77 0 0 chr3 116653544 116653570 -42946213 + (TC)n Simple_repeat Simple_repeat 1 26 0 3 1474 183 42 0 0 chr3 116653570 116653594 -42946189 + (TG)n Simple_repeat Simple_repeat 1 24 0 3 1475 1458 45 11 0 chr3 116654219 116654395 -42945388 - B2_Mm1a SINE B2 -14 179 2 3 1475 219 218 55 0 chr3 116656843 116656898 -42942885 + MIR SINE MIR 115 172 -90 3 1475 324 348 52 39 chr3 116657182 116657415 -42942368 + MARNA DNA Mariner 309 544 -42 3 1475 246 365 81 9 chr3 116657689 116657899 -42941884 - MIR SINE MIR -21 241 17 3 1475 1966 94 3 17 chr3 116658506 116658797 -42940986 - Lx LINE L1 -1 6653 6367 3 1475 619 246 25 85 chr3 116659396 116659494 -42940289 + B4 SINE B4 5 90 -202 3 1475 706 172 0 0 chr3 116659494 116659616 -42940167 + B1_Mur2 SINE Alu 2 123 -26 3 1475 493 235 104 15 chr3 116659647 116659781 -42940002 + B1_Mur3 SINE Alu 2 147 -2 3 1475 221 234 0 169 chr3 116659781 116659858 -42939925 + B4A SINE B4 87 150 -142 3 1475 387 273 0 0 chr3 116659863 116659951 -42939832 + RSINE1 SINE B4 78 165 0 3 1475 381 22 0 0 chr3 116659966 116660012 -42939771 + (CA)n Simple_repeat Simple_repeat 2 47 0 3 1475 2062 163 85 21 chr3 116660902 116661371 -42938412 + RLTR28 LTR ERVL 6 504 -20 3 1475 205 359 75 5 chr3 116661858 116662057 -42937726 + L3 LINE CR1 2054 2266 -2223 3 1475 303 28 0 0 chr3 116662551 116662587 -42937196 + (TG)n Simple_repeat Simple_repeat 2 37 0 3 1475 271 328 17 0 chr3 116662664 116662783 -42937000 + L3 LINE CR1 2794 2914 -1575 3 1475 427 114 12 25 chr3 116663253 116663334 -42936449 + GA-rich Low_complexity Low_complexity 2 81 0 3 1475 303 283 19 0 chr3 116663499 116663605 -42936178 + ORR1E LTR MaLR 1 108 -251 3 1475 1064 162 40 15 chr3 116663624 116663825 -42935958 - URR1B DNA MER1_type -7 218 13 3 1475 956 84 28 6 chr3 116664076 116664227 -42935556 + B1_Mm SINE Alu 9 140 -7 3 1475 378 323 51 13 chr3 116664398 116664555 -42935228 - B4 SINE B4 -121 171 9 3 1475 731 243 33 0 chr3 116665051 116665232 -42934551 - B3 SINE B2 -29 187 1 3 1475 414 0 0 0 chr3 116665587 116665633 -42934150 + (TTA)n Simple_repeat Simple_repeat 2 47 0 3 1475 823 138 7 7 chr3 116666525 116666678 -42933105 + CT-rich Low_complexity Low_complexity 3 155 0 3 1475 1204 68 0 0 chr3 116666680 116666827 -42932956 - B1_Mus1 SINE Alu -1 147 1 3 1475 349 329 71 19 chr3 116666990 116667145 -42932638 + MER45A DNA Tip100 1 163 -15 3 1475 644 167 31 35 chr3 116668263 116668405 -42931378 + B1_Mur1 SINE Alu 2 139 -10 3 1475 24 0 0 0 chr3 116668974 116668998 -42930785 + AT_rich Low_complexity Low_complexity 1 24 0 3 1475 21 36 0 0 chr3 116669549 116669577 -42930206 + AT_rich Low_complexity Low_complexity 1 28 0 3 1475 366 23 0 0 chr3 116670249 116670292 -42929491 + (TG)n Simple_repeat Simple_repeat 1 43 0 3 1475 522 0 0 0 chr3 116671965 116672023 -42927760 + (GA)n Simple_repeat Simple_repeat 1 58 0 3 1475 240 35 0 0 chr3 116672196 116672225 -42927558 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 3 1475 244 44 67 0 chr3 116672309 116672354 -42927429 + (CAAAA)n Simple_repeat Simple_repeat 2 49 0 3 1475 430 233 136 32 chr3 116672746 116672901 -42926882 - MIRb SINE MIR -63 205 35 3 1475 1449 276 89 25 chr3 116673195 116673833 -42925950 + L1MA5 LINE L1 5254 5932 -368 3 1475 1677 185 37 48 chr3 116673913 116674287 -42925496 - ORR1D1 LTR MaLR 0 374 5 3 1475 27 0 0 0 chr3 116674459 116674486 -42925297 + AT_rich Low_complexity Low_complexity 1 27 0 3 1475 1350 99 16 10 chr3 116674493 116674687 -42925096 + B2_Mm2 SINE B2 1 195 0 3 1475 451 287 43 14 chr3 116674692 116674830 -42924953 + B3A SINE B2 36 177 -21 3 1475 666 334 104 10 chr3 116675508 116675892 -42923891 - LTR16B LTR ERVL 0 463 44 4 1475 234 385 45 30 chr3 116676139 116676273 -42923510 - L2 LINE L2 -454 2965 2830 4 1475 289 314 66 48 chr3 116676312 116676479 -42923304 - L2 LINE L2 -708 2711 2542 4 1475 5242 57 1 3 chr3 116676835 116677483 -42922300 - L1Md_F2 LINE L1 -9 6573 5927 4 1475 505 271 74 116 chr3 116677585 116677948 -42921835 - ORR1E LTR MaLR -2 357 10 4 1475 1220 263 16 48 chr3 116678665 116679228 -42920555 + L1_Mur3 LINE L1 850 1403 -4477 4 1475 1128 188 10 80 chr3 116679238 116679538 -42920245 + L1_Mur3 LINE L1 2623 2901 -2979 4 1475 4175 254 77 81 chr3 116679541 116680568 -42919215 + Lx7 LINE L1 5755 6725 -971 4 1475 3167 158 92 23 chr3 116680568 116681210 -42918573 - RMER6C LTR ERVK 0 690 5 4 1475 4175 254 77 81 chr3 116681210 116681223 -42918560 + Lx7 LINE L1 6726 6726 -970 4 1475 1136 141 141 0 chr3 116681223 116681421 -42918362 - URR1A DNA MER1_type 0 226 1 4 1475 4175 254 77 81 chr3 116681421 116681949 -42917834 + Lx7 LINE L1 6726 7318 -378 4 1475 533 115 11 0 chr3 116681966 116682053 -42917730 + (GA)n Simple_repeat Simple_repeat 2 89 0 4 1475 284 206 151 11 chr3 116682489 116682582 -42917201 + MLT1A1 LTR MaLR 299 404 -4 4 1475 239 221 29 0 chr3 116682646 116682714 -42917069 + (TA)n Simple_repeat Simple_repeat 2 71 0 4 1475 279 54 0 0 chr3 116682715 116682752 -42917031 + (CA)n Simple_repeat Simple_repeat 1 37 0 4 1475 215 254 36 0 chr3 116682930 116682985 -42916798 - PB1D7 SINE Alu -33 87 31 4 1475 285 320 31 0 chr3 116683054 116683182 -42916601 - ID_B1 SINE B4 -3 221 90 4 1475 243 245 0 0 chr3 116683629 116683682 -42916101 + (TG)n Simple_repeat Simple_repeat 2 54 0 4 1475 568 288 47 0 chr3 116684187 116684402 -42915381 - L1MA6 LINE L1 -3 6297 6073 4 1475 28 0 0 0 chr3 116685739 116685767 -42914016 + AT_rich Low_complexity Low_complexity 1 28 0 4 1475 803 169 206 11 chr3 116685772 116685952 -42913831 + B3 SINE B2 2 216 0 4 1475 806 235 86 0 chr3 116686003 116686190 -42913593 - B3 SINE B2 -11 205 3 4 1475 235 259 52 0 chr3 116687253 116687311 -42912472 + PB1D9 SINE Alu 60 120 0 4 1475 533 273 14 102 chr3 116687453 116687669 -42912114 + MTD LTR MaLR 1 197 -222 4 1475 431 309 0 16 chr3 116687780 116687908 -42911875 + MTD LTR MaLR 280 405 -14 4 1475 266 286 14 0 chr3 116688697 116688767 -42911016 + CT-rich Low_complexity Low_complexity 5 75 0 4 1475 1098 198 14 0 chr3 116690636 116690843 -42908940 + B3 SINE B2 6 215 -1 4 1475 3554 170 100 36 chr3 116691766 116692619 -42907164 - RMER13B LTR ERVK 0 908 2 4 1475 547 192 58 0 chr3 116692674 116692778 -42907005 + B3A SINE B2 1 110 -88 4 1475 443 250 10 0 chr3 116692841 116692941 -42906842 + B3 SINE B2 116 216 0 4 1475 594 239 92 27 chr3 116693430 116693615 -42906168 - B3A SINE B2 -1 197 1 4 1475 697 236 11 28 chr3 116693702 116693881 -42905902 - Lx8 LINE L1 -521 6952 6777 4 1475 1102 183 47 0 chr3 116693894 116694107 -42905676 - ORR1A2 LTR MaLR -91 236 14 4 1475 896 304 70 12 chr3 116694109 116694439 -42905344 - Lx8 LINE L1 -700 6773 6425 4 1475 205 308 0 0 chr3 116695571 116695623 -42904160 + CT-rich Low_complexity Low_complexity 3 54 0 4 1475 972 70 0 0 chr3 116695624 116695753 -42904030 + (TTCC)n Simple_repeat Simple_repeat 1 129 0 4 1475 207 395 43 14 chr3 116695840 116696052 -42903731 - MIRb SINE MIR -7 255 45 4 1475 459 179 26 0 chr3 116696346 116696424 -42903359 - ID4_ SINE ID 0 83 4 4 1475 694 276 162 22 chr3 116696445 116696845 -42902938 - L1MB8 LINE L1 -6 6172 5717 4 1475 798 109 0 0 chr3 116696882 116697001 -42902782 + (TTTC)n Simple_repeat Simple_repeat 2 120 0 4 1475 1100 72 0 7 chr3 116697001 116697140 -42902643 - B1_Mm SINE Alu -9 138 1 4 1475 1122 248 89 25 chr3 116697243 116697617 -42902166 + MTD LTR MaLR 17 403 -16 4 1475 188 312 118 0 chr3 116698685 116698778 -42901005 + L2 LINE L2 1641 1744 -1675 4 1475 554 241 291 60 chr3 116698911 116699145 -42900638 - B4 SINE B4 -2 290 3 4 1475 5297 53 1 30 chr3 116699845 116700523 -42899260 - L1_Mus2 LINE L1 -1 6565 5907 4 1475 4001 83 0 0 chr3 116700523 116701054 -42898729 - L1Md_F LINE L1 -3199 2684 2154 4 1475 1679 223 83 34 chr3 116701057 116701613 -42898170 - L1Md_F LINE L1 -5645 971 184 4 1475 23 33 0 0 chr3 116701718 116701748 -42898035 + AT_rich Low_complexity Low_complexity 1 30 0 4 1475 819 236 127 64 chr3 116702619 116702886 -42896897 + B4A SINE B4 9 292 0 4 1475 215 250 204 10 chr3 116702972 116703088 -42896695 + L2b LINE L2 3240 3412 -14 4 1475 264 77 0 0 chr3 116703295 116703334 -42896449 + (TA)n Simple_repeat Simple_repeat 2 40 0 4 1475 258 32 0 0 chr3 116705975 116706006 -42893777 + (TC)n Simple_repeat Simple_repeat 2 32 0 4 1475 258 105 0 0 chr3 116706006 116706043 -42893740 + (TG)n Simple_repeat Simple_repeat 1 38 0 4 1475 692 237 0 7 chr3 116706053 116706189 -42893594 - RSINE1 SINE B4 -28 137 3 4 1475 1079 254 36 13 chr3 116707573 116707876 -42891907 - Lx6 LINE L1 0 7460 7151 4 1475 909 279 127 35 chr3 116708117 116708433 -42891350 + ORR1D2 LTR MaLR 1 345 -25 4 1475 555 337 136 60 chr3 116708975 116709474 -42890309 - MLT1F LTR MaLR -9 539 3 4 1475 1023 333 204 29 chr3 116709483 116710597 -42889186 - MLT1F-int LTR MaLR -7 1482 174 4 1475 3553 129 28 19 chr3 116710784 116711362 -42888421 - Lx4A LINE L1 -1 7057 6475 4 1475 4079 151 9 3 chr3 116711378 116712041 -42887742 - Lx LINE L1 -2 6652 5986 4 1475 293 174 235 39 chr3 116712043 116712145 -42887638 - L1MC1 LINE L1 -169 6164 6043 4 1475 696 270 140 101 chr3 116712185 116712543 -42887240 - MTE2a LTR MaLR -7 372 1 4 1475 914 233 5 0 chr3 116712553 116712759 -42887024 - L1MC1 LINE L1 -366 5967 5761 4 1475 513 246 44 44 chr3 116713218 116713401 -42886382 - MLT2F LTR ERVL -280 383 201 4 1475 931 71 234 0 chr3 116713600 116713754 -42886029 + B2_Mm1t SINE B2 2 191 -2 4 1475 4012 44 6 0 chr3 116713754 116714236 -42885547 + L1Md_F2 LINE L1 6096 6580 -2 4 1475 19574 47 0 2 chr3 116714427 116717501 -42882282 - L1Md_T LINE L1 0 6582 3515 4 1475 2576 223 247 3 chr3 116717504 116718366 -42881417 - RMER1A Other Other -154 876 1 4 1475 674 279 111 46 chr3 116718618 116718890 -42880893 + L1MD3 LINE L1 7428 7716 -279 4 1475 3392 31 13 0 chr3 116718890 116719281 -42880502 - MTA_Mm LTR MaLR 0 396 1 4 1475 674 267 125 48 chr3 116719281 116719527 -42880256 + L1MD3 LINE L1 7506 7915 -80 4 1475 486 262 48 34 chr3 116719577 116719723 -42880060 - RSINE1 SINE B4 -6 159 12 4 1475 396 297 25 37 chr3 116720361 116720522 -42879261 - RLTR14 LTR ERV1 0 382 224 4 1475 291 71 0 0 chr3 116720954 116720996 -42878787 + (TG)n Simple_repeat Simple_repeat 2 43 0 4 1475 9825 20 0 0 chr3 116721063 116722176 -42877607 + L1Md_T LINE L1 4474 5586 -297 4 1475 8883 38 1 0 chr3 116722176 116723171 -42876612 + L1Md_T LINE L1 5587 6582 0 4 1475 672 200 8 16 chr3 116723686 116723808 -42875975 - B1F SINE Alu 0 149 29 4 1475 251 387 42 62 chr3 116723957 116724044 -42875739 - MIRb SINE MIR -21 247 162 4 1475 324 0 0 0 chr3 116724044 116724080 -42875703 + (TA)n Simple_repeat Simple_repeat 2 37 0 4 1475 251 387 42 62 chr3 116724080 116724232 -42875551 - MIRb SINE MIR -107 161 13 4 1475 558 67 47 9 chr3 116726115 116726221 -42873562 + (TCTA)n Simple_repeat Simple_repeat 1 110 0 4 1475 37 69 0 0 chr3 116726592 116726664 -42873119 + AT_rich Low_complexity Low_complexity 1 72 0 4 1475 26 0 0 0 chr3 116726683 116726709 -42873074 + AT_rich Low_complexity Low_complexity 1 26 0 4 1475 1996 168 36 0 chr3 116726926 116727260 -42872523 - ORR1A1 LTR MaLR 0 346 1 4 1475 386 310 21 70 chr3 116727376 116727563 -42872220 - ORR1E LTR MaLR -164 195 18 4 1475 217 346 96 0 chr3 116728633 116728737 -42871046 - MIRb SINE MIR -66 202 89 4 1475 415 266 36 9 chr3 116728755 116728865 -42870918 + PB1D10 SINE Alu 5 117 0 4 1475 899 262 27 61 chr3 116728881 116729174 -42870609 + B4A SINE B4 10 292 0 4 1475 297 311 104 0 chr3 116729576 116729591 -42870192 - ID_B1 SINE B4 -4 220 104 4 1475 357 297 33 0 chr3 116729591 116729682 -42870101 - B1F1 SINE Alu -33 116 23 4 1475 1874 178 99 2 chr3 116729682 116730087 -42869696 + Lx4B LINE L1 5470 5915 -1066 4 1475 333 0 0 0 chr3 116730104 116730141 -42869642 + (TG)n Simple_repeat Simple_repeat 1 37 0 4 1475 2309 167 76 35 chr3 116730150 116730608 -42869175 + Lx4B LINE L1 6176 6652 -406 4 1475 186 71 0 0 chr3 116730676 116730704 -42869079 + (TTAA)n Simple_repeat Simple_repeat 1 28 0 4 1475 239 238 62 51 chr3 116730843 116730921 -42868862 - PB1D7 SINE Alu -45 104 11 4 1475 1167 239 185 38 chr3 116731196 116731644 -42868139 + MLT2B3 LTR ERVL 1 514 -40 4 1475 374 204 0 11 chr3 116731654 116731748 -42868035 + (TA)n Simple_repeat Simple_repeat 1 93 0 4 1475 478 129 33 33 chr3 116731815 116731967 -42867816 + (TCTA)n Simple_repeat Simple_repeat 3 154 0 4 1475 1024 231 67 0 chr3 116732409 116732604 -42867179 - B3 SINE B2 -7 209 2 4 1475 36279 34 0 0 chr3 116732899 116738391 -42861392 + L1Md_T LINE L1 1 5589 -297 4 1475 9554 7 0 0 chr3 116738391 116739387 -42860396 + L1Md_T LINE L1 5590 6585 0 4 1475 266 283 30 20 chr3 116739537 116739638 -42860145 - MER20 DNA MER1_type 0 219 118 4 1475 190 143 41 0 chr3 116739871 116739920 -42859863 + CT-rich Low_complexity Low_complexity 4 54 0 4 1475 330 260 26 0 chr3 116739933 116740010 -42859773 - ID2 SINE ID -3 80 2 4 1475 3907 64 2 14 chr3 116740031 116740522 -42859261 + Lx3_Mus LINE L1 6525 7009 0 4 1475 576 0 0 0 chr3 116740962 116741026 -42858757 + (TC)n Simple_repeat Simple_repeat 2 65 0 4 1475 333 123 0 0 chr3 116741034 116741099 -42858684 + (GA)n Simple_repeat Simple_repeat 1 65 0 4 1475 218 297 0 15 chr3 116742333 116742398 -42857385 + B4 SINE B4 81 144 -148 4 1475 420 267 30 0 chr3 116742345 116742446 -42857337 + PB1D10 SINE Alu 7 110 -7 4 1475 979 266 15 0 chr3 116742453 116742652 -42857131 + B3 SINE B2 2 203 -13 4 1475 21 0 0 0 chr3 116742750 116742771 -42857012 + AT_rich Low_complexity Low_complexity 1 21 0 4 1475 789 41 0 0 chr3 116742906 116743003 -42856780 + (TC)n Simple_repeat Simple_repeat 2 98 0 4 1475 855 389 86 19 chr3 116743030 116743615 -42856168 - MLT2E LTR ERVL -2 626 3 4 1475 1357 209 76 48 chr3 116743775 116744067 -42855716 + ORR1D2 LTR MaLR 5 311 -59 4 1475 1219 63 0 14 chr3 116744067 116744205 -42855578 + B1_Mus2 SINE Alu 2 139 -8 5 1475 354 74 0 0 chr3 116744205 116744259 -42855524 + (CCAA)n Simple_repeat Simple_repeat 2 55 0 5 1475 1357 209 76 48 chr3 116744264 116744327 -42855456 + ORR1D2 LTR MaLR 312 370 0 4 1475 1945 189 56 25 chr3 116744887 116745283 -42854500 + MTD LTR MaLR 1 408 -11 5 1475 303 237 165 0 chr3 116745354 116745451 -42854332 + MTD-int LTR MaLR 19 131 -1127 5 1475 445 78 0 15 chr3 116745452 116745517 -42854266 - ORR1A1 LTR MaLR -63 283 220 5 1475 312 27 0 0 chr3 116745538 116745575 -42854208 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 5 1475 1219 279 55 11 chr3 116745893 116746256 -42853527 + MTEa LTR MaLR 1 379 0 5 1475 1013 253 93 99 chr3 116749199 116749703 -42850080 - RLTR18 LTR ERVK -115 501 1 5 1475 948 258 98 36 chr3 116749703 116749939 -42849844 + ORR1D2 LTR MaLR 118 370 0 5 1475 724 286 6 6 chr3 116749939 116750107 -42849676 + B3A SINE B2 29 196 -2 5 1475 315 345 130 28 chr3 116750688 116751156 -42848627 + L1MC4a LINE L1 5354 5869 -2013 5 1475 217 297 0 15 chr3 116752778 116752843 -42846940 + CT-rich Low_complexity Low_complexity 1 64 0 5 1475 450 0 0 0 chr3 116753027 116753077 -42846706 + (TC)n Simple_repeat Simple_repeat 1 50 0 5 1475 403 144 322 28 chr3 116753337 116753425 -42846358 + B2_Mm2 SINE B2 2 118 -77 5 1475 534 16 0 0 chr3 116753425 116753488 -42846295 + (CA)n Simple_repeat Simple_repeat 2 64 0 5 1475 403 144 322 28 chr3 116753488 116753542 -42846241 + B2_Mm2 SINE B2 119 186 -9 5 1475 207 355 0 0 chr3 116754517 116754579 -42845204 - MIRm SINE MIR -6 270 209 5 1475 1124 200 54 0 chr3 116755123 116755328 -42844455 - B3 SINE B2 0 216 1 5 1475 1043 297 41 15 chr3 116756230 116756568 -42843215 + ORR1E LTR MaLR 7 353 -6 5 1475 1255 233 119 27 chr3 116757009 116757344 -42842439 - ORR1D2 LTR MaLR 0 370 5 5 1475 420 37 0 0 chr3 116757698 116757752 -42842031 + (CAGA)n Simple_repeat Simple_repeat 2 55 0 5 1475 3688 18 5 0 chr3 116757930 116758324 -42841459 + MTA_Mm LTR MaLR 1 396 0 5 1475 445 226 43 0 chr3 116758757 116758850 -42840933 + ID_B1 SINE B4 126 222 -2 5 1475 814 199 27 14 chr3 116758902 116759050 -42840733 + B1_Mur4 SINE Alu 1 150 0 5 1475 24 32 0 0 chr3 116759087 116759118 -42840665 + AT_rich Low_complexity Low_complexity 1 31 0 5 1475 3277 118 45 52 chr3 116759563 116760099 -42839684 - Lx4A LINE L1 -7 7051 6520 5 1475 745 131 123 0 chr3 116760207 116760329 -42839454 - B1_Mur4 SINE Alu -2 148 12 5 1475 857 243 270 0 chr3 116760414 116760718 -42839065 + MTD LTR MaLR 20 405 -14 5 1475 378 0 0 0 chr3 116760883 116760925 -42838858 + (TCCA)n Simple_repeat Simple_repeat 4 45 0 5 1475 205 331 120 6 chr3 116761011 116761178 -42838605 - MIRb SINE MIR -46 222 37 5 1475 233 194 179 0 chr3 116761219 116761286 -42838497 + ORR1D1 LTR MaLR 6 84 -290 5 1475 402 317 97 16 chr3 116761309 116761495 -42838288 + Lx8 LINE L1 7177 7377 -96 5 1475 888 48 41 38 chr3 116762135 116762483 -42837300 + (CAGAGA)n Simple_repeat Simple_repeat 1 349 0 5 1475 282 138 0 0 chr3 116762485 116762513 -42837270 + (GA)n Simple_repeat Simple_repeat 2 29 0 5 1475 1023 40 34 28 chr3 116762513 116762691 -42837092 + (CAGAGA)n Simple_repeat Simple_repeat 2 180 0 5 1475 282 138 0 0 chr3 116762691 116762727 -42837056 + (GA)n Simple_repeat Simple_repeat 2 37 0 5 1475 681 144 0 0 chr3 116762767 116762885 -42836898 + (GA)n Simple_repeat Simple_repeat 2 119 0 5 1475 484 280 42 48 chr3 116763502 116763667 -42836116 - RSINE1 SINE B4 0 165 2 5 1475 228 67 0 0 chr3 116763793 116763823 -42835960 + (GAAAA)n Simple_repeat Simple_repeat 2 31 0 5 1475 876 261 24 5 chr3 116764830 116765042 -42834741 + B3 SINE B2 1 216 0 5 1475 318 115 0 0 chr3 116765541 116765602 -42834181 + (TC)n Simple_repeat Simple_repeat 2 62 0 5 1475 255 297 21 16 chr3 116765789 116765874 -42833909 + ID4 SINE ID 18 106 -46 5 1475 672 13 0 0 chr3 116766217 116766294 -42833489 + (TC)n Simple_repeat Simple_repeat 2 78 0 5 1475 453 36 0 0 chr3 116766297 116766352 -42833431 + (TG)n Simple_repeat Simple_repeat 1 55 0 5 1475 283 259 56 45 chr3 116766360 116766449 -42833334 - PB1D10 SINE Alu -7 110 21 5 1475 342 0 0 0 chr3 116766484 116766522 -42833261 + (TTTTG)n Simple_repeat Simple_repeat 2 39 0 5 1475 1059 82 0 43 chr3 116766522 116766662 -42833121 - B1_Mus1 SINE Alu -10 138 5 5 1475 618 239 8 0 chr3 116766935 116767052 -42832731 + ID_B1 SINE B4 84 201 -23 5 1475 481 301 35 14 chr3 116767052 116767079 -42832704 + B1F2 SINE Alu 3 149 0 5 1475 180 0 0 0 chr3 116767146 116767166 -42832617 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 5 1475 666 257 0 7 chr3 116767166 116767303 -42832480 - B1_Mur2 SINE Alu -13 136 1 5 1475 1672 53 0 0 chr3 116767398 116767585 -42832198 - B2_Mm1t SINE B2 -6 187 1 5 1475 2247 122 3 0 chr3 116767619 116767939 -42831844 - ORR1A2 LTR MaLR -1 326 6 5 1475 729 230 9 101 chr3 116768457 116768675 -42831108 + B3A SINE B2 1 198 0 5 1475 735 304 119 27 chr3 116769223 116769517 -42830266 - MER2 DNA MER2_type -1 344 24 5 1475 236 224 0 26 chr3 116769573 116769651 -42830132 + (TATATG)n Simple_repeat Simple_repeat 6 81 0 5 1475 405 0 0 0 chr3 116769658 116769703 -42830080 + (TC)n Simple_repeat Simple_repeat 2 46 0 5 1475 798 280 110 13 chr3 116770223 116770523 -42829260 - RMER15 LTR ERVL -27 548 220 5 1475 311 296 17 85 chr3 116771286 116771404 -42828379 + B3A SINE B2 1 110 -88 5 1475 232 164 30 0 chr3 116771581 116771648 -42828135 + (CA)n Simple_repeat Simple_repeat 2 70 0 5 1475 1232 201 241 12 chr3 116772180 116772494 -42827289 - MTD LTR MaLR -14 405 16 5 1475 474 18 0 0 chr3 116772494 116772549 -42827234 + (TAGA)n Simple_repeat Simple_repeat 4 58 0 5 1475 1232 201 241 12 chr3 116772549 116772562 -42827221 - MTD LTR MaLR -404 15 3 5 1475 311 330 17 17 chr3 116772703 116772823 -42826960 + MTEa LTR MaLR 258 377 -2 5 1475 459 0 0 0 chr3 116773182 116773233 -42826550 + (TCTA)n Simple_repeat Simple_repeat 4 54 0 5 1475 22 0 0 0 chr3 116773401 116773423 -42826360 + AT_rich Low_complexity Low_complexity 1 22 0 5 1475 912 138 85 0 chr3 116774447 116774577 -42825206 + B1_Mur4 SINE Alu 2 142 -8 5 1475 297 310 115 144 chr3 116774626 116774965 -42824818 + ORR1E LTR MaLR 51 379 0 5 1475 192 40 0 0 chr3 116776818 116776843 -42822940 + (TCTCTG)n Simple_repeat Simple_repeat 2 26 0 5 1475 182 37 37 0 chr3 116777876 116777903 -42821880 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 5 1475 1747 218 19 19 chr3 116778039 116778409 -42821374 - ORR1D1 LTR MaLR -4 370 1 5 1475 396 169 0 38 chr3 116778867 116778947 -42820836 + RLTR40 LTR ERVK 1 77 -740 5 1475 246 248 139 0 chr3 116778946 116779047 -42820736 - RLTR40 LTR ERVK -219 598 484 5 1475 2187 192 86 26 chr3 116779044 116779588 -42820195 + RLTR40 LTR ERVK 82 658 -159 5 1475 254 401 21 0 chr3 116779759 116779901 -42819882 - LTR78 LTR ERV1 -19 1285 1141 5 1475 1216 263 68 43 chr3 116780498 116780868 -42818915 + MTEb LTR MaLR 1 379 0 5 1475 22 0 0 0 chr3 116780885 116780907 -42818876 + AT_rich Low_complexity Low_complexity 1 22 0 5 1475 207 240 67 44 chr3 116782272 116782407 -42817376 + (ATATG)n Simple_repeat Simple_repeat 3 140 0 5 1475 181 93 22 65 chr3 116782416 116782462 -42817321 + (TTATA)n Simple_repeat Simple_repeat 1 44 0 5 1475 216 258 46 15 chr3 116782473 116782603 -42817180 + (TATAA)n Simple_repeat Simple_repeat 5 138 0 5 1475 588 291 73 103 chr3 116782762 116782840 -42816943 + ORR1E LTR MaLR 1 83 -276 5 1475 3329 21 21 3 chr3 116782840 116783229 -42816554 - MTA_Mm LTR MaLR 0 396 1 5 1475 588 291 73 103 chr3 116783229 116783518 -42816265 + ORR1E LTR MaLR 84 357 -2 5 1475 1930 139 84 15 chr3 116783547 116783890 -42815893 + ORR1B2 LTR MaLR 1 367 0 5 1475 4817 223 65 50 chr3 116783890 116784537 -42815246 + ORR1B2-int LTR MaLR 1 659 -711 5 1475 604 184 47 47 chr3 116784537 116784685 -42815098 + B1_Mur3 SINE Alu 2 149 0 5 184 4817 223 65 50 chr3 116784685 116785386 -42814397 + ORR1B2-int LTR MaLR 660 1369 -1 5 1476 1753 172 49 17 chr3 116785386 116785734 -42814049 + ORR1B2 LTR MaLR 1 359 -8 5 1476 185 314 43 0 chr3 116786164 116786234 -42813549 + MIRb SINE MIR 116 188 -80 5 1476 21 36 0 0 chr3 116786310 116786338 -42813445 + AT_rich Low_complexity Low_complexity 1 28 0 5 1476 413 280 118 78 chr3 116786381 116786583 -42813200 - Lx9 LINE L1 -44 7600 7387 5 1476 1006 143 111 29 chr3 116786583 116786791 -42812992 - URR1A DNA MER1_type -1 225 1 5 1476 413 280 118 78 chr3 116786791 116786909 -42812874 - Lx9 LINE L1 -258 7386 7267 5 1476 4018 88 0 13 chr3 116787717 116788270 -42811513 - Lx3_Mus LINE L1 -321 6688 6143 5 1476 2447 63 3 33 chr3 116788270 116788599 -42811184 + Lx3_Mus LINE L1 6682 7000 -9 5 1476 1005 206 126 0 chr3 116789180 116789403 -42810380 + ORR1B1 LTR MaLR 1 251 -143 5 1476 333 254 156 39 chr3 116789421 116789601 -42810182 - RLTR21 LTR ERVK -31 1541 1341 5 1476 3787 142 90 28 chr3 116789605 116789990 -42809793 - RMER12 LTR ERVK -517 805 435 5 1476 1379 76 22 0 chr3 116789990 116790174 -42809609 - B2_Mm2 SINE B2 -6 189 2 5 1476 3787 142 90 28 chr3 116790174 116790546 -42809237 - RMER12 LTR ERVK -888 434 1 5 1476 979 102 0 7 chr3 116790546 116790694 -42809089 + ORR1B2 LTR MaLR 221 367 0 5 1476 27 0 0 0 chr3 116791827 116791854 -42807929 + AT_rich Low_complexity Low_complexity 1 27 0 5 1476 1815 254 76 26 chr3 116791871 116792412 -42807371 - Lx8 LINE L1 -33 7440 6873 5 1476 201 94 0 0 chr3 116792494 116792526 -42807257 + (CATA)n Simple_repeat Simple_repeat 2 33 0 5 1476 283 326 89 47 chr3 116792731 116792878 -42806905 + MLT1I LTR MaLR 98 258 -153 5 1476 1090 151 101 10 chr3 116792878 116793085 -42806698 + URR1A DNA MER1_type 1 226 0 5 1476 283 326 89 47 chr3 116793085 116793172 -42806611 + MLT1I LTR MaLR 259 342 -69 5 1476 827 155 217 33 chr3 116793806 116793986 -42805797 - B3 SINE B2 -2 214 2 5 1476 330 26 0 0 chr3 116794529 116794568 -42805215 + (TA)n Simple_repeat Simple_repeat 1 39 0 5 1476 24 0 0 0 chr3 116794602 116794626 -42805157 + AT_rich Low_complexity Low_complexity 1 24 0 5 1476 770 246 25 55 chr3 116794626 116794828 -42804955 - B3A SINE B2 -2 196 1 5 1476 2995 67 12 17 chr3 116794909 116795319 -42804464 - L1_Mus2 LINE L1 0 6566 6159 5 1476 5506 87 90 33 chr3 116795647 116796500 -42803283 - RLTR13D6 LTR ERVK 0 902 1 5 1476 257 235 14 42 chr3 116796571 116796642 -42803141 + CT-rich Low_complexity Low_complexity 1 69 0 6 1476 219 69 0 0 chr3 116797073 116797102 -42802681 + (TA)n Simple_repeat Simple_repeat 2 30 0 6 1476 247 322 33 0 chr3 116797842 116797932 -42801851 + GA-rich Low_complexity Low_complexity 4 96 0 6 1476 3165 116 50 20 chr3 116798680 116799226 -42800557 + RMER2 LTR ERV1 1 562 -5 6 1476 219 304 0 14 chr3 116799398 116799468 -42800315 + MIR SINE MIR 88 156 -106 6 1476 2623 122 39 10 chr3 116800134 116800548 -42799235 + Lx4A LINE L1 6631 7056 -2 6 1476 255 57 0 0 chr3 116800548 116800578 -42799205 + (TAAAA)n Simple_repeat Simple_repeat 1 30 0 6 1476 326 182 0 0 chr3 116801169 116801224 -42798559 + B1_Mur4 SINE Alu 3 57 -93 6 1476 236 179 51 31 chr3 116801579 116801677 -42798106 + (TTATA)n Simple_repeat Simple_repeat 3 102 0 6 1476 468 238 0 0 chr3 116803541 116803646 -42796137 + PB1D7 SINE Alu 9 113 -7 6 1476 1829 165 110 3 chr3 116804419 116804754 -42795029 + Lx5 LINE L1 6680 7050 0 6 1476 1279 277 52 36 chr3 116804779 116805217 -42794566 - Lx8 LINE L1 -7 7466 7022 6 1476 192 303 29 48 chr3 116806309 116806413 -42793370 + MER5B DNA MER1_type 4 105 -73 6 1476 653 274 40 6 chr3 116807476 116807652 -42792131 + ID_B1 SINE B4 3 184 -40 6 1476 887 286 28 35 chr3 116808485 116808775 -42791008 + B4A SINE B4 1 288 -4 6 1476 459 78 0 0 chr3 116808793 116808857 -42790926 + (CA)n Simple_repeat Simple_repeat 2 65 0 6 1476 977 106 17 12 chr3 116809619 116809791 -42789992 + (TTCC)n Simple_repeat Simple_repeat 1 173 0 6 1476 722 81 32 8 chr3 116809825 116809949 -42789834 + (TTCC)n Simple_repeat Simple_repeat 3 129 0 6 1476 391 165 44 15 chr3 116812257 116812392 -42787391 + GA-rich Low_complexity Low_complexity 1 139 0 6 1476 251 357 23 30 chr3 116812855 116812988 -42786795 - MER58A DNA MER1_type -42 182 51 6 1476 539 280 56 7 chr3 116813278 116813422 -42786361 - B3A SINE B2 -47 151 1 6 1476 22 0 0 0 chr3 116813434 116813456 -42786327 + AT_rich Low_complexity Low_complexity 1 22 0 6 1476 285 51 0 0 chr3 116813456 116813495 -42786288 + (TG)n Simple_repeat Simple_repeat 2 40 0 6 1476 2871 76 2 15 chr3 116813521 116813746 -42786037 + MTB_Mm LTR MaLR 1 220 -187 6 1476 1985 113 12 54 chr3 116813746 116814082 -42785701 + RLTRETN_Mm LTR ERVK 1 322 0 6 1476 2871 76 2 15 chr3 116814082 116814268 -42785515 + MTB_Mm LTR MaLR 221 407 0 6 1476 444 248 25 41 chr3 116814268 116814382 -42785401 - RSINE1 SINE B4 -51 114 3 6 1476 820 317 49 3 chr3 116814476 116814821 -42784962 - MLT1A0 LTR MaLR 0 365 5 6 1476 222 208 0 0 chr3 116814891 116814939 -42784844 + CT-rich Low_complexity Low_complexity 1 48 0 6 1476 669 214 63 14 chr3 116814957 116815099 -42784684 - B1_Mur3 SINE Alu 0 149 1 6 1476 307 49 0 0 chr3 116815479 116815520 -42784263 + ORR1A2 LTR MaLR 286 326 0 6 1476 10997 129 58 16 chr3 116815520 116817404 -42782379 + ORR1A2-int LTR MaLR 1 1963 0 6 1476 856 133 19 26 chr3 116817404 116817558 -42782225 + ORR1A2 LTR MaLR 1 153 -174 6 1476 282 116 0 0 chr3 116817577 116817620 -42782163 + (T)n Simple_repeat Simple_repeat 1 43 0 6 1476 799 99 0 0 chr3 116817632 116817763 -42782020 - L1_Mus4 LINE L1 -1 6635 6505 6 1476 601 290 6 6 chr3 116818123 116818293 -42781490 + MTD LTR MaLR 3 172 -247 6 1476 2593 151 63 0 chr3 116818443 116818887 -42780896 + Lx LINE L1 6183 6654 0 6 1476 434 277 142 5 chr3 116818887 116819093 -42780690 + MTD LTR MaLR 177 419 0 6 1476 538 233 30 23 chr3 116820870 116821002 -42778781 - B3 SINE B2 0 216 84 6 1476 362 197 0 0 chr3 116821132 116821193 -42778590 - B1_Mur4 SINE Alu -89 61 1 6 1476 561 336 52 26 chr3 116821194 116821466 -42778317 + MLT1B LTR MaLR 112 390 0 6 1476 246 220 50 17 chr3 116822436 116822496 -42777287 - PB1D7 SINE Alu -7 113 52 6 1476 502 318 50 0 chr3 116823597 116823798 -42775985 + MIRb SINE MIR 26 236 -32 6 1476 1892 168 111 3 chr3 116823841 116824212 -42775571 + MTC LTR MaLR 1 411 -10 6 1476 249 33 0 0 chr3 116824217 116824247 -42775536 + (CAGA)n Simple_repeat Simple_repeat 2 31 0 6 1476 321 336 98 42 chr3 116824247 116824382 -42775401 - B4A SINE B4 -66 226 83 6 1476 411 73 0 0 chr3 116824410 116824465 -42775318 + (TG)n Simple_repeat Simple_repeat 1 55 0 6 1476 706 295 0 18 chr3 116824490 116824659 -42775124 - B3A SINE B2 -24 174 9 6 1476 406 235 9 38 chr3 116824658 116824764 -42775019 - B4A SINE B4 -188 104 2 6 1476 422 213 56 24 chr3 116824827 116824952 -42774831 + MER97c DNA MER1_type? 50 178 -912 6 1476 189 0 0 0 chr3 116825113 116825134 -42774649 + (T)n Simple_repeat Simple_repeat 1 21 0 6 1476 712 297 31 59 chr3 116825699 116825985 -42773798 - B4A SINE B4 -10 282 5 6 1476 408 40 0 0 chr3 116826147 116826197 -42773586 + (TCTA)n Simple_repeat Simple_repeat 2 51 0 6 1476 1953 279 153 44 chr3 116826349 116827023 -42772760 + Lx9 LINE L1 6594 7305 -339 6 1476 1801 231 37 5 chr3 116827023 116827431 -42772352 + MTC LTR MaLR 1 421 0 6 1476 2253 127 0 3 chr3 116827434 116827759 -42772024 + ORR1A3 LTR MaLR 3 326 0 6 1476 1953 279 153 44 chr3 116827759 116828028 -42771755 + Lx9 LINE L1 7306 7644 0 6 1476 369 214 50 10 chr3 116828363 116828462 -42771321 + MTE2a LTR MaLR 275 377 -2 6 1476 494 247 33 20 chr3 116828566 116828719 -42771064 + MTD LTR MaLR 5 159 -260 6 1476 483 318 19 19 chr3 116828777 116828934 -42770849 + ID_B1 SINE B4 65 221 -3 6 1476 7378 77 9 19 chr3 116829813 116831147 -42768636 + L1_Mus2 LINE L1 5244 6566 0 6 1476 590 320 119 4 chr3 116831173 116831433 -42768350 + B4A SINE B4 2 291 -1 6 1476 1744 267 109 28 chr3 116831806 116832780 -42767003 + L1MA6 LINE L1 5160 6225 -75 6 1476 423 98 0 0 chr3 116835826 116835887 -42763896 + (TCCC)n Simple_repeat Simple_repeat 4 64 0 6 1476 195 42 0 0 chr3 116836748 116836772 -42763011 + (TGG)n Simple_repeat Simple_repeat 2 25 0 6 1476 211 239 0 42 chr3 116836784 116837030 -42762753 + (ATGGTG)n Simple_repeat Simple_repeat 1 235 0 6 1476 33 0 0 0 chr3 116837137 116837170 -42762613 + AT_rich Low_complexity Low_complexity 1 33 0 6 1476 2300 217 45 55 chr3 116837389 116837990 -42761793 - RLTR18 LTR ERVK 0 616 22 6 1476 1115 243 75 70 chr3 116838024 116838507 -42761276 + Lx8 LINE L1 6978 7462 -11 6 1476 351 65 0 0 chr3 116838706 116838752 -42761031 + (CAA)n Simple_repeat Simple_repeat 2 47 0 6 1476 948 106 0 0 chr3 116838762 116838932 -42760851 + (CA)n Simple_repeat Simple_repeat 1 170 0 6 1476 468 193 71 27 chr3 116839232 116839344 -42760439 + PB1D10 SINE Alu 1 117 0 6 1476 250 338 81 43 chr3 116839512 116839673 -42760110 - MLT1H LTR MaLR 0 549 383 6 1476 306 0 0 0 chr3 116839831 116839865 -42759918 + (TTA)n Simple_repeat Simple_repeat 2 35 0 6 1476 274 120 0 20 chr3 116839868 116839919 -42759864 - Lx2 LINE L1 -6 6991 6942 6 1476 410 19 0 0 chr3 116840508 116840561 -42759222 - L1_Mus2 LINE L1 0 6566 6514 6 1476 1830 111 27 113 chr3 116840561 116840897 -42758886 - ORR1A2 LTR MaLR -14 313 7 6 1476 265 371 132 29 chr3 116841566 116841846 -42757937 - L2b LINE L2 -10 3365 3057 6 1476 335 255 106 0 chr3 116842522 116842616 -42757167 + PB1D7 SINE Alu 2 105 -15 6 1476 446 276 235 0 chr3 116842901 116843071 -42756712 + MIR SINE MIR 2 211 -51 6 1476 186 179 0 0 chr3 116843162 116843218 -42756565 + A-rich Low_complexity Low_complexity 6 61 0 6 1476 236 269 45 0 chr3 116843368 116843435 -42756348 + MTE2b LTR MaLR 3 72 -307 6 1476 244 217 0 55 chr3 116843739 116843812 -42755971 + (CCCTAA)n Simple_repeat Simple_repeat 6 74 0 6 1476 276 332 6 13 chr3 116843952 116844065 -42755718 - MIR SINE MIR 0 268 151 6 1476 785 40 0 10 chr3 116845121 116845223 -42754560 + (TG)n Simple_repeat Simple_repeat 1 101 0 6 1476 528 287 134 94 chr3 116845244 116845521 -42754262 - B4A SINE B4 -4 288 1 6 1476 380 240 0 16 chr3 116845719 116845846 -42753937 + GA-rich Low_complexity Low_complexity 1 125 0 6 1476 599 312 82 24 chr3 116845980 116846187 -42753596 + ID_B1 SINE B4 6 224 0 6 1476 229 195 0 0 chr3 116846187 116846228 -42753555 + A-rich Low_complexity Low_complexity 4 44 0 6 1476 423 56 0 0 chr3 116846501 116846555 -42753228 + (TG)n Simple_repeat Simple_repeat 1 54 0 6 1476 2508 108 61 7 chr3 116846555 116846966 -42752817 + Lx LINE L1 6222 6654 0 6 1476 191 88 29 0 chr3 116846971 116847005 -42752778 + (TAAAA)n Simple_repeat Simple_repeat 2 36 0 6 1476 236 313 78 45 chr3 116848091 116848245 -42751538 - MIR SINE MIR -10 252 94 6 1476 24 0 0 0 chr3 116848280 116848304 -42751479 + AT_rich Low_complexity Low_complexity 1 24 0 6 1476 297 0 0 0 chr3 116848342 116848375 -42751408 + (TG)n Simple_repeat Simple_repeat 2 34 0 6 1476 23 54 0 0 chr3 116848418 116848455 -42751328 + AT_rich Low_complexity Low_complexity 1 37 0 6 1476 7696 162 29 9 chr3 116848503 116850033 -42749750 - L1_Mur3 LINE L1 -571 5309 3749 6 1476 26 0 0 0 chr3 116850461 116850487 -42749296 + AT_rich Low_complexity Low_complexity 1 26 0 6 1476 670 208 119 38 chr3 116850487 116850672 -42749111 - B3 SINE B2 -12 204 5 6 1476 234 326 69 53 chr3 116850676 116850864 -42748919 - B3A SINE B2 -7 191 1 6 1476 1092 276 47 60 chr3 116851237 116851619 -42748164 - MTE2b LTR MaLR -2 377 1 6 1476 2534 133 10 13 chr3 116851696 116852085 -42747698 - ORR1B1 LTR MaLR -6 388 1 6 1476 340 168 37 74 chr3 116852416 116852551 -42747232 + (TTAAA)n Simple_repeat Simple_repeat 3 132 0 6 1476 222 128 0 0 chr3 116853167 116853206 -42746577 + (A)n Simple_repeat Simple_repeat 1 39 0 6 1476 456 19 0 0 chr3 116853496 116853549 -42746234 + (TTTA)n Simple_repeat Simple_repeat 4 56 0 6 1476 232 273 15 0 chr3 116853860 116853926 -42745857 - B4A SINE B4 -223 69 3 6 1476 214 316 137 44 chr3 116854147 116854329 -42745454 + L2 LINE L2 2518 2716 -703 6 1476 215 266 47 0 chr3 116854504 116854568 -42745215 + L2 LINE L2 2797 2863 -556 6 1476 2666 211 40 81 chr3 116854948 116855602 -42744181 + RMER20B LTR ERVK 1 627 0 7 1476 336 194 15 8 chr3 116857367 116857497 -42742286 + (TA)n Simple_repeat Simple_repeat 1 131 0 7 1476 380 204 29 58 chr3 116858279 116858383 -42741400 + ID_B1 SINE B4 121 221 -3 7 1476 228 67 0 0 chr3 116859126 116859156 -42740627 + (TGAA)n Simple_repeat Simple_repeat 2 31 0 7 1476 941 177 0 0 chr3 116859218 116859365 -42740418 - B1_Mur1 SINE Alu 0 149 3 7 1476 225 274 0 0 chr3 116859413 116859464 -42740319 - PB1D9 SINE Alu -69 51 1 7 1476 438 48 16 31 chr3 116859560 116859624 -42740159 + ORR1A2 LTR MaLR 265 327 0 7 1476 1147 215 197 3 chr3 116859624 116859918 -42739865 + ORR1D1 LTR MaLR 24 374 0 7 1476 263 291 106 39 chr3 116860293 116860472 -42739311 - RLTR22_Mur LTR ERVK -179 1669 1479 7 1476 1914 69 12 0 chr3 116860476 116860722 -42739061 - L1_Mus1 LINE L1 0 6567 6319 7 1476 1173 34 0 0 chr3 116860724 116860872 -42738911 - L1Md_F3 LINE L1 -675 5909 5762 7 1476 189 74 0 0 chr3 116860906 116860933 -42738850 + (GTTTG)n Simple_repeat Simple_repeat 3 29 0 7 1476 598 203 0 83 chr3 116860944 116861100 -42738683 + RLTR31_Mur LTR ERVK 1 143 -410 7 1476 253 62 0 0 chr3 116861100 116861132 -42738651 + Lx LINE L1 5747 5778 -876 7 1476 3433 65 65 0 chr3 116861127 116861603 -42738180 - L1Md_F2 LINE L1 -258 6324 5818 7 1476 388 248 47 31 chr3 116861765 116861894 -42737889 + RMER15 LTR ERVL 1 131 -444 7 1476 763 306 13 17 chr3 116861980 116862219 -42737564 + RMER15 LTR ERVL 310 547 -28 7 1476 384 332 57 111 chr3 116862269 116862567 -42737216 + MamGypLTR1a LTR Gypsy 500 781 -3 7 1476 991 257 76 13 chr3 116862792 116863017 -42736766 + MTD LTR MaLR 80 318 -101 7 1476 2627 164 46 9 chr3 116863057 116863518 -42736265 - RLTR31_Mur LTR ERVK 0 553 76 7 1476 2757 43 6 17 chr3 116863518 116863875 -42735908 - L1Md_F2 LINE L1 -1 6581 6229 7 1476 2942 69 5 13 chr3 116863857 116864255 -42735528 + L1Md_F2 LINE L1 6176 6570 -12 7 1476 212 365 102 46 chr3 116864368 116864799 -42734984 - L2 LINE L2 -468 2951 2497 7 1476 287 213 139 7 chr3 116864803 116864940 -42734843 + RMER17D2 LTR ERVK 389 543 -266 7 1476 457 285 25 51 chr3 116865035 116865055 -42734728 + CYRA11_Mm Unknown Y-chromosome 154 168 -449 7 1476 1324 159 0 10 chr3 116865055 116865264 -42734519 - URR1B DNA MER1_type 0 225 19 7 1476 1109 297 40 26 chr3 116866418 116866770 -42733013 - ORR1E LTR MaLR -2 357 1 7 1476 1440 252 37 29 chr3 116867013 116867364 -42732419 - ORR1E LTR MaLR -5 354 1 7 1476 327 360 52 21 chr3 116867382 116867575 -42732208 + ORR1E LTR MaLR 2 200 -159 7 1476 217 246 28 42 chr3 116867787 116867859 -42731924 - MIR SINE MIR -126 136 66 7 1476 1196 267 113 34 chr3 116868087 116868475 -42731308 - MTD LTR MaLR 0 419 1 7 1476 2181 164 89 34 chr3 116868522 116868995 -42730788 + RLTR19 LTR ERVK 1 499 0 7 1476 22 0 0 0 chr3 116869346 116869368 -42730415 + AT_rich Low_complexity Low_complexity 1 22 0 7 1476 1231 255 182 14 chr3 116869382 116869492 -42730291 + MTD LTR MaLR 1 119 -300 7 1476 350 108 0 63 chr3 116869492 116869571 -42730212 - L1Md_F2 LINE L1 0 6582 6509 7 1476 1231 255 182 14 chr3 116869571 116869818 -42729965 + MTD LTR MaLR 120 418 -1 7 1476 8020 65 7 14 chr3 116869942 116871599 -42728184 - L1Md_F2 LINE L1 -12 6570 4903 7 1476 3735 35 5 0 chr3 116871599 116872033 -42727750 + RLTR10C LTR ERVK 1 436 0 7 1476 8020 70 17 25 chr3 116872033 116872250 -42727533 - L1Md_F2 LINE L1 -981 4902 4712 7 1476 841 245 24 64 chr3 116872423 116872672 -42727111 - Lx7 LINE L1 -417 7279 7041 7 1476 1653 182 92 6 chr3 116873531 116873879 -42725904 + MTEa LTR MaLR 2 379 0 7 1476 192 382 13 26 chr3 116874193 116874271 -42725512 + MIRm SINE MIR 17 93 -183 7 1476 187 254 102 0 chr3 116874301 116874360 -42725423 + MIR SINE MIR 95 159 -103 7 1476 7604 103 17 25 chr3 116874444 116875928 -42723855 - L1Md_F2 LINE L1 0 6997 5533 7 1476 381 365 155 30 chr3 116877359 116877797 -42721986 + L2 LINE L2 2375 2867 -552 7 1476 205 181 0 35 chr3 116879500 116879586 -42720197 + (ATG)n Simple_repeat Simple_repeat 3 85 0 7 1476 180 0 0 0 chr3 116879673 116879693 -42720090 + (A)n Simple_repeat Simple_repeat 1 20 0 7 1476 223 78 104 0 chr3 116879764 116879841 -42719942 + (TA)n Simple_repeat Simple_repeat 2 86 0 7 1476 693 273 0 25 chr3 116880429 116880587 -42719196 - B4 SINE B4 -6 286 133 7 1476 1433 286 109 15 chr3 116880705 116881163 -42718620 + MLT2B3 LTR ERVL 1 501 -53 7 1476 533 328 78 0 chr3 116881257 116881437 -42718346 - Tigger5 DNA MER2_type -2206 200 7 7 1476 839 359 78 34 chr3 116881667 116881931 -42717852 + MLT-int LTR MaLR 1212 1472 -263 7 1476 1602 215 21 37 chr3 116881931 116882308 -42717475 + ORR1D1 LTR MaLR 1 371 -3 7 1476 839 359 78 34 chr3 116882308 116882545 -42717238 + MLT-int LTR MaLR 1473 1734 -1 7 1476 782 243 68 16 chr3 116882622 116882814 -42716969 - MTEa LTR MaLR 0 379 178 7 1476 457 304 92 46 chr3 116882910 116883258 -42716525 - L1MC3 LINE L1 -118 8085 7722 7 1476 353 260 31 10 chr3 116883272 116883369 -42716414 + PB1D10 SINE Alu 6 104 -13 7 1476 1962 279 106 7 chr3 116883573 116883805 -42715978 - L1MC3 LINE L1 -687 7516 7270 7 1476 821 62 9 0 chr3 116883805 116883917 -42715866 + (GA)n Simple_repeat Simple_repeat 2 114 0 7 1476 1962 279 106 7 chr3 116883917 116884651 -42715132 - L1MC3 LINE L1 -934 7269 6456 7 1476 288 258 90 16 chr3 116884771 116884893 -42714890 - L1MC3 LINE L1 -2098 6105 5975 7 1476 353 276 53 71 chr3 116884996 116885304 -42714479 - L1MC3 LINE L1 -4989 1762 1554 7 1476 990 296 122 24 chr3 116885543 116886478 -42713305 - L1MA5A LINE L1 -356 5941 4861 7 1476 228 227 25 62 chr3 116886611 116886691 -42713092 - L1MC3 LINE L1 -5432 1319 1243 7 1476 234 271 0 0 chr3 116886745 116886793 -42712990 - PB1D10 SINE Alu -20 97 50 7 1476 381 276 35 19 chr3 116886914 116887101 -42712682 - L1MC3 LINE L1 -5528 1223 938 7 1476 337 235 85 35 chr3 116887198 116887339 -42712444 - L1MC3 LINE L1 -5377 668 521 7 1476 321 89 0 0 chr3 116887365 116887410 -42712373 + (CA)n Simple_repeat Simple_repeat 2 46 0 7 1476 216 111 0 0 chr3 116887625 116887661 -42712122 + (TTTC)n Simple_repeat Simple_repeat 2 37 0 7 1476 369 0 0 0 chr3 116887775 116887816 -42711967 + (CA)n Simple_repeat Simple_repeat 1 41 0 7 1476 576 0 0 0 chr3 116887816 116887880 -42711903 + (GA)n Simple_repeat Simple_repeat 1 64 0 7 1476 2976 239 106 21 chr3 116887880 116888699 -42711084 - Lx9 LINE L1 -173 7471 6583 7 1476 1095 195 116 14 chr3 116888700 116888976 -42710807 - L1_Rod LINE L1 -511 5336 5033 7 1476 447 35 0 0 chr3 116889763 116889820 -42709963 + (CAACC)n Simple_repeat Simple_repeat 2 58 0 7 1476 837 280 65 43 chr3 116889820 116890096 -42709687 + MTEa LTR MaLR 98 379 0 7 1476 587 273 43 11 chr3 116891124 116891288 -42708495 - ID_B1 SINE B4 -45 247 81 7 1476 387 0 0 0 chr3 116891970 116892013 -42707770 + (GA)n Simple_repeat Simple_repeat 2 44 0 7 1476 847 317 59 46 chr3 116892711 116893319 -42706464 - L1ME1 LINE L1 -118 6061 5446 7 1476 411 21 0 0 chr3 116893345 116893393 -42706390 + (TG)n Simple_repeat Simple_repeat 2 49 0 7 1476 313 363 34 7 chr3 116893474 116893621 -42706162 + MER58A DNA MER1_type 51 201 -23 7 1476 287 222 0 0 chr3 116893635 116893698 -42706085 + BC1_Mm scRNA scRNA 3 65 -87 7 1476 399 41 0 0 chr3 116893705 116893754 -42706029 + (CA)n Simple_repeat Simple_repeat 2 50 0 7 1476 254 135 50 30 chr3 116893770 116893869 -42705914 + RLTR1B-int LTR ERV1 1139 1239 -2060 7 1476 414 39 0 0 chr3 116893962 116894014 -42705769 + (TC)n Simple_repeat Simple_repeat 2 53 0 7 1476 4835 85 6 9 chr3 116894341 116894972 -42704811 - L1_Mus4 LINE L1 -5 6631 6003 7 1476 342 0 0 0 chr3 116895500 116895538 -42704245 + (TC)n Simple_repeat Simple_repeat 2 39 0 7 1476 198 167 0 0 chr3 116895541 116895577 -42704206 + (CATA)n Simple_repeat Simple_repeat 2 37 0 7 1476 240 255 0 0 chr3 116895577 116895628 -42704155 + MTC LTR MaLR 28 78 -343 7 1476 3190 110 46 2 chr3 116895628 116896103 -42703680 + Lx2A1 LINE L1 6508 7003 -5 7 1476 1774 149 68 39 chr3 116896130 116896466 -42703317 + MTC LTR MaLR 68 413 -8 7 1476 298 235 38 105 chr3 116896997 116897055 -42702728 - MTEa LTR MaLR 0 370 322 7 1476 387 0 0 0 chr3 116897055 116897098 -42702685 + (CA)n Simple_repeat Simple_repeat 1 43 0 7 1476 914 264 53 82 chr3 116897098 116897434 -42702349 - MTEa LTR MaLR -51 328 1 7 1476 181 320 112 25 chr3 116897515 116897675 -42702108 + L2 LINE L2 2481 2654 -765 7 1476 555 325 0 0 chr3 116897675 116897801 -42701982 + RSINE1 SINE B4 17 142 -23 7 1476 579 53 0 0 chr3 116897817 116897892 -42701891 + (CA)n Simple_repeat Simple_repeat 2 76 0 7 1476 206 378 27 0 chr3 116897934 116898045 -42701738 + L2 LINE L2 2685 2798 -621 7 1476 747 302 116 3 chr3 116898216 116898518 -42701265 - MER2 DNA MER2_type -9 336 1 7 1476 306 297 151 7 chr3 116898870 116899009 -42700774 - L1ME3B LINE L1 -353 5887 5729 7 1476 284 299 54 74 chr3 116899433 116899581 -42700202 + RMER5 LTR ERV1 15 159 -375 7 1476 488 281 53 92 chr3 116899916 116900143 -42699640 + RMER5 LTR ERV1 117 334 -200 7 1476 546 263 85 28 chr3 116900764 116900940 -42698843 + RLTR18B LTR ERVK 84 269 -243 7 1476 1170 278 30 27 chr3 116900916 116901245 -42698538 + RLTR18B LTR ERVK 178 507 -5 7 1476 7412 102 26 3 chr3 116901483 116903169 -42696614 + L1Md_F LINE L1 578 2302 -3581 7 1476 2009 106 31 22 chr3 116903169 116903488 -42696295 + RLTRETN_Mm LTR ERVK 1 322 0 7 1476 15097 16 1 1 chr3 116903488 116905142 -42694641 + ETnERV2-int LTR ERVK 1 1655 -1659 7 1476 2734 103 111 12 chr3 116905142 116905574 -42694209 - IAPLTR2_Mm LTR ERVK 0 475 1 7 1476 15097 16 1 1 chr3 116905574 116905592 -42694191 + ETnERV2-int LTR ERVK 1656 1672 -1642 7 1476 6109 42 4 20 chr3 116905576 116906332 -42693451 - IAPEz-int LTR ERVK -2 6479 5736 7 1476 2177 69 7 0 chr3 116906331 116906607 -42693176 - IAPEz-int LTR ERVK -4845 1636 1359 7 1476 3645 58 4 16 chr3 116906607 116907185 -42692598 - IAPEz-int LTR ERVK -5819 662 168 7 1476 228 321 0 0 chr3 116907185 116907238 -42692545 - RLTR27 LTR ERVK -34 275 223 7 1476 272 32 0 0 chr3 116907238 116907269 -42692514 - IAPEz-int LTR ERVK -6286 195 165 7 1476 230 327 0 0 chr3 116907269 116907321 -42692462 - RLTR27 LTR ERVK -37 272 221 7 1476 1039 82 26 105 chr3 116907321 116907512 -42692271 - IAPEz-int LTR ERVK -6288 193 18 7 1476 251 51 0 0 chr3 116907497 116907536 -42692247 - IAPEz-int LTR ERVK -1932 55 17 7 1476 341 123 82 0 chr3 116907537 116907610 -42692173 - IAPEz-int LTR ERVK -1906 81 3 7 1476 2650 108 116 12 chr3 116907635 116908065 -42691718 - IAPLTR2_Mm LTR ERVK 0 475 1 7 1476 19055 146 31 21 chr3 116908309 116913171 -42686612 + ETnERV2-int LTR ERVK 1658 7202 -204 7 1476 2017 102 31 22 chr3 116913171 116913490 -42686293 + RLTRETN_Mm LTR ERVK 1 322 0 7 184 24991 102 8 0 chr3 116913492 116917722 -42682061 + L1_Mus1 LINE L1 2299 6565 -2 7 1477 579 217 9 0 chr3 116918225 116918331 -42681452 - B3 SINE B2 -109 107 1 7 1477 25 0 0 0 chr3 116918450 116918475 -42681308 + AT_rich Low_complexity Low_complexity 1 25 0 7 1477 546 57 0 0 chr3 116918534 116918604 -42681179 + (CA)n Simple_repeat Simple_repeat 1 70 0 7 1477 239 349 153 15 chr3 116919587 116919718 -42680065 + MLT1A LTR MaLR 4 152 -222 7 1477 531 298 11 58 chr3 116919822 116920011 -42679772 + MLT1A LTR MaLR 195 374 0 7 1477 859 342 75 57 chr3 116920264 116920652 -42679131 - MLT1H LTR MaLR -131 418 24 7 1477 489 248 60 89 chr3 116922354 116922497 -42677286 + RSINE1 SINE B4 3 141 -24 7 1477 392 0 21 0 chr3 116922497 116922545 -42677238 + (TC)n Simple_repeat Simple_repeat 1 49 0 8 1477 489 248 60 89 chr3 116922545 116922569 -42677214 + RSINE1 SINE B4 142 165 0 7 1477 24 67 0 0 chr3 116922605 116922650 -42677133 + AT_rich Low_complexity Low_complexity 1 45 0 8 1477 425 256 0 0 chr3 116923598 116923680 -42676103 + ID4_ SINE ID 1 82 -1 8 1477 2598 233 34 3 chr3 116924091 116924672 -42675111 - Lx9 LINE L1 -353 7291 6693 8 1477 203 93 47 0 chr3 116925293 116925317 -42674466 + (TTTTTA)n Simple_repeat Simple_repeat 6 31 0 8 1477 1247 69 0 0 chr3 116925317 116925462 -42674321 - B1_Mm SINE Alu 0 147 3 8 1477 203 93 47 0 chr3 116925462 116925480 -42674303 + (TTTTTA)n Simple_repeat Simple_repeat 6 23 0 8 1477 523 259 69 0 chr3 116925560 116925691 -42674092 - RSINE1 SINE B4 -23 142 3 8 1477 2915 88 33 13 chr3 116925971 116926363 -42673420 - MTB LTR MaLR 0 400 1 8 1477 896 300 9 5 chr3 116926811 116927032 -42672751 - ID_B1 SINE B4 -2 222 1 8 1477 748 250 0 63 chr3 116928184 116928342 -42671441 + RSINE1 SINE B4 1 148 -17 8 1477 1055 90 15 0 chr3 116928537 116928670 -42671113 + B1_Mus1 SINE Alu 2 136 -12 8 1477 432 0 0 0 chr3 116928671 116928719 -42671064 + (CAAA)n Simple_repeat Simple_repeat 2 49 0 8 1477 599 320 15 25 chr3 116928739 116928941 -42670842 + B4 SINE B4 2 201 -91 8 1477 943 189 147 0 chr3 116928942 116929133 -42670650 + URR1A DNA MER1_type 7 225 -1 8 1477 519 123 0 0 chr3 116929268 116929349 -42670434 + (CA)n Simple_repeat Simple_repeat 2 82 0 8 1477 432 0 0 0 chr3 116929927 116929975 -42669808 + (TG)n Simple_repeat Simple_repeat 2 49 0 8 1477 7787 96 29 2 chr3 116930253 116932128 -42667655 - L1_Mus3 LINE L1 0 6638 4727 8 1477 672 204 157 0 chr3 116932342 116932489 -42667294 + URR1A DNA MER1_type 8 177 -49 8 1477 434 239 0 22 chr3 116932959 116933049 -42666734 - RSINE1 SINE B4 0 165 78 8 1477 1506 191 130 26 chr3 116933701 116934040 -42665743 + ORR1D1 LTR MaLR 1 374 0 8 1477 5786 185 64 27 chr3 116935409 116936528 -42663255 + Lx5 LINE L1 5734 6905 -145 8 1477 506 57 14 0 chr3 116936528 116936598 -42663185 + (TG)n Simple_repeat Simple_repeat 1 71 0 8 1477 5786 193 73 20 chr3 116936598 116936736 -42663047 + Lx5 LINE L1 6906 7049 -1 8 1477 2312 201 59 31 chr3 116937067 116937750 -42662033 + RMER1A Other Other 345 1061 -5 8 1477 663 317 98 43 chr3 116937879 116938278 -42661505 - MER68 LTR ERVL 0 563 143 8 1477 533 320 8 8 chr3 116938908 116939037 -42660746 - RSINE1 SINE B4 0 165 37 8 1477 426 147 783 0 chr3 116939044 116939164 -42660619 + RMER6C LTR ERVK 1 214 -506 8 1477 6475 46 2 0 chr3 116939164 116940395 -42659388 + L1Md_F3 LINE L1 5125 6357 -227 8 1477 6367 59 4 16 chr3 116940395 116941165 -42658618 - L1Md_F2 LINE L1 -2 6580 5820 8 1477 1641 50 35 0 chr3 116941161 116941362 -42658421 + L1Md_F3 LINE L1 6363 6570 -14 8 1477 2352 135 21 85 chr3 116941370 116941887 -42657896 + RMER6C LTR ERVK 204 687 -3 8 1477 4654 80 2 49 chr3 116941996 116942612 -42657171 + LTRIS_Mus LTR ERV1 1 587 0 8 1477 795 146 7 20 chr3 116943618 116943765 -42656018 - L1Md_F3 LINE L1 -1 6583 6439 8 1477 543 107 0 0 chr3 116943817 116943901 -42655882 + (TG)n Simple_repeat Simple_repeat 1 84 0 8 1477 546 336 0 0 chr3 116943903 116944046 -42655737 - B4A SINE B4 -12 280 138 8 1477 376 298 81 74 chr3 116944246 116944590 -42655193 - RLTR20D LTR ERVK -259 433 51 8 1477 548 283 30 15 chr3 116945624 116945825 -42653958 - L1MA6 LINE L1 -88 6212 6009 8 1477 35 41 0 0 chr3 116946523 116946572 -42653211 + AT_rich Low_complexity Low_complexity 1 49 0 8 1477 389 172 0 0 chr3 116947164 116947228 -42652555 + PB1D10 SINE Alu 17 80 -37 8 1477 549 44 0 0 chr3 116947247 116947315 -42652468 + (TAGA)n Simple_repeat Simple_repeat 4 71 0 8 1477 3502 34 2 0 chr3 116947986 116948396 -42651387 + L1Md_F2 LINE L1 5176 5586 -297 8 1477 8551 47 1 9 chr3 116948397 116949397 -42650386 + L1Md_F2 LINE L1 5588 6579 -3 8 1477 372 306 26 70 chr3 116949922 116950193 -42649590 - RMER17C LTR ERVK -68 342 84 8 1477 800 137 7 0 chr3 116950205 116950344 -42649439 + (GGAGAA)n Simple_repeat Simple_repeat 2 141 0 8 1477 432 179 18 9 chr3 116950328 116950441 -42649342 + GA-rich Low_complexity Low_complexity 4 117 0 8 1477 310 322 7 14 chr3 116950638 116950851 -42648932 + CT-rich Low_complexity Low_complexity 1 211 0 8 1477 337 273 54 107 chr3 116951847 116952015 -42647768 - RSINE1 SINE B4 -3 162 4 8 1477 419 273 74 12 chr3 116952166 116952329 -42647454 - MER57E1 LTR ERV1 -195 177 5 8 1477 655 315 0 18 chr3 116952342 116952507 -42647276 + RSINE1 SINE B4 2 163 -2 8 1477 402 21 0 0 chr3 116953185 116953232 -42646551 + (T)n Simple_repeat Simple_repeat 1 47 0 8 1477 227 247 167 13 chr3 116953418 116953494 -42646289 + Tigger7 DNA MER2_type 2143 2230 -261 8 1477 240 263 216 101 chr3 116953494 116953693 -42646090 - RMER12 LTR ERVK 0 1322 1101 8 1477 5463 117 33 1 chr3 116953885 116954733 -42645050 - RLTR22_Mur LTR ERVK -973 875 1 8 1477 439 278 121 0 chr3 116954733 116954930 -42644853 + Tigger7 DNA MER2_type 2225 2445 -46 8 1477 555 16 0 0 chr3 116955130 116955194 -42644589 + (TC)n Simple_repeat Simple_repeat 1 64 0 8 1477 826 230 47 7 chr3 116956229 116956462 -42643321 - MT2A LTR ERVL 0 533 243 8 1477 810 215 191 11 chr3 116956510 116956693 -42643090 - B3 SINE B2 0 216 1 8 1477 5812 234 88 15 chr3 116956693 116958537 -42641246 + MERVK26-int LTR ERVK 4937 6915 -4 8 1477 531 326 116 25 chr3 116958700 116959027 -42640756 + RMER20B LTR ERVK 240 596 -31 8 1477 480 245 20 0 chr3 116959031 116959133 -42640650 - MT2A LTR ERVL -336 197 94 8 1477 537 267 7 30 chr3 116959129 116959264 -42640519 - MT2A LTR ERVL -401 132 1 8 1477 420 328 145 0 chr3 116959364 116959495 -42640288 - RSINE1 SINE B4 -12 153 4 8 1477 658 282 17 6 chr3 116960028 116960206 -42639577 - B3A SINE B2 -15 183 4 8 1477 197 348 25 51 chr3 116961015 116961133 -42638650 - MIRb SINE MIR -132 136 22 8 1477 1127 175 37 112 chr3 116961234 116961582 -42638201 + RLTRETN_Mm LTR ERVK 1 322 0 8 1477 1666 222 76 10 chr3 116961691 116962101 -42637682 - Lx7 LINE L1 -392 7304 6868 8 1477 215 316 84 17 chr3 116963419 116963538 -42636245 + L2 LINE L2 380 506 -2913 8 1477 201 39 0 0 chr3 116963555 116963581 -42636202 + (TTTTTG)n Simple_repeat Simple_repeat 2 27 0 8 1477 676 328 58 31 chr3 116963612 116963971 -42635812 - MER88 LTR ERVL -75 389 21 8 1477 1009 233 34 10 chr3 116964768 116964976 -42634807 - B3 SINE B2 -3 213 1 8 1477 327 379 103 0 chr3 116965015 116965189 -42634594 + L2 LINE L2 2605 2796 -623 8 1477 25 0 0 0 chr3 116965288 116965313 -42634470 + AT_rich Low_complexity Low_complexity 1 25 0 8 1477 971 141 12 0 chr3 116966175 116966345 -42633438 + CT-rich Low_complexity Low_complexity 2 173 0 8 1477 22 0 0 0 chr3 116967698 116967720 -42632063 + AT_rich Low_complexity Low_complexity 1 22 0 8 1477 23 0 0 0 chr3 116968294 116968317 -42631466 + AT_rich Low_complexity Low_complexity 1 23 0 8 1477 202 317 88 40 chr3 116968694 116968819 -42630964 + MIRb SINE MIR 73 203 -65 8 1477 478 246 70 64 chr3 116969262 116969449 -42630334 + MTEa LTR MaLR 19 206 -173 8 1477 429 234 57 0 chr3 116969862 116970003 -42629780 + Lx9 LINE L1 7490 7638 -6 8 1477 7610 14 0 0 chr3 116970014 116970863 -42628920 + L1Md_T LINE L1 4738 5586 -297 8 1477 8555 57 0 0 chr3 116970863 116971859 -42627924 + L1Md_T LINE L1 5587 6582 0 8 1477 781 222 7 0 chr3 116972136 116972271 -42627512 + B1_Mur1 SINE Alu 3 138 -11 8 1477 180 77 0 0 chr3 116972271 116972297 -42627486 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 8 1477 452 255 25 99 chr3 116972959 116973120 -42626663 - B3A SINE B2 -5 193 45 8 1477 754 44 0 0 chr3 116973120 116973210 -42626573 - L1_Mm LINE L1 -644 5239 5150 8 1477 902 66 22 22 chr3 116973210 116973349 -42626434 + L1Md_F2 LINE L1 6444 6582 0 8 1477 324 203 15 30 chr3 116973365 116973431 -42626352 - B3A SINE B2 -130 68 4 8 1477 328 190 60 0 chr3 116973786 116973886 -42625897 + RMER1C Other Other 1121 1226 -116 8 1477 661 157 0 124 chr3 116973880 116974033 -42625750 + RMER1C Other Other 1198 1331 -11 8 1477 432 0 0 0 chr3 116974154 116974202 -42625581 + (TC)n Simple_repeat Simple_repeat 1 48 0 8 1477 327 146 0 0 chr3 116974202 116974257 -42625526 + (CGTG)n Simple_repeat Simple_repeat 1 55 0 8 1477 658 339 48 42 chr3 116974257 116974546 -42625237 - B4 SINE B4 0 292 2 8 1477 418 173 40 13 chr3 116974604 116974680 -42625103 - ID4 SINE ID 0 83 6 8 1477 499 289 23 8 chr3 116974692 116974821 -42624962 - B1F SINE Alu -2 147 17 8 1477 249 98 0 0 chr3 116975058 116975099 -42624684 + (TCTCTG)n Simple_repeat Simple_repeat 2 42 0 8 1477 763 180 23 8 chr3 116975106 116975235 -42624548 - B1_Mus1 SINE Alu -16 132 2 8 1477 400 322 117 38 chr3 116975638 116975954 -42623829 + Cheshire DNA MER1_type 2037 2377 -43 8 1477 219 297 144 0 chr3 116976228 116976346 -42623437 - MIR SINE MIR -36 226 92 8 1477 749 231 35 75 chr3 116977296 116977497 -42622286 - B3A SINE B2 0 216 24 8 1477 2558 56 3 0 chr3 116977583 116977887 -42621896 + L1_Mus1 LINE L1 6261 6565 -2 8 1477 553 205 103 0 chr3 116978468 116978585 -42621198 - B3A SINE B2 -69 129 1 8 1477 277 361 29 22 chr3 116979058 116979194 -42620589 - B1_Mur1 SINE Alu 0 149 13 8 1477 561 240 45 70 chr3 116979720 116980001 -42619782 - L1M2 LINE L1 -3010 3136 2856 8 1477 390 93 0 0 chr3 116980042 116980096 -42619687 - tRNA-Ala-GCA tRNA tRNA -20 55 2 8 1477 7921 50 1 9 chr3 116980096 116981098 -42618685 + L1_Mus1 LINE L1 5605 6567 0 8 1477 868 312 102 6 chr3 116981340 116981818 -42617965 - L1M2 LINE L1 -3310 2833 2310 8 1477 3630 63 4 9 chr3 116982722 116983188 -42616595 + L1_Mus3 LINE L1 6142 6605 -33 8 1477 272 70 23 0 chr3 116983188 116983231 -42616552 + (TAAA)n Simple_repeat Simple_repeat 1 44 0 8 1477 1075 37 0 29 chr3 116983536 116983674 -42616109 - B1_Mm SINE Alu 0 147 14 8 1477 543 310 120 51 chr3 116983781 116984097 -42615686 + RMER15 LTR ERVL 221 558 -17 8 1477 1375 249 110 69 chr3 116986525 116987295 -42612488 - Lx6 LINE L1 0 7460 6453 8 1477 6096 135 16 8 chr3 116987316 116988121 -42611662 + Lx3C LINE L1 6066 6864 -112 8 1477 387 0 0 0 chr3 116988121 116988164 -42611619 + (TG)n Simple_repeat Simple_repeat 1 43 0 9 1477 6096 135 16 8 chr3 116988164 116988254 -42611529 + Lx3C LINE L1 6865 6967 -9 8 1477 242 56 0 27 chr3 116988264 116988301 -42611482 + (TAA)n Simple_repeat Simple_repeat 1 36 0 9 1477 39138 12 1 7 chr3 116988485 116994378 -42605405 + L1Md_A LINE L1 1 5586 -297 9 1477 9382 10 5 0 chr3 116994378 116995369 -42604414 + L1Md_A LINE L1 5587 6582 0 9 1477 213 39 0 0 chr3 116995374 116995400 -42604383 + (A)n Simple_repeat Simple_repeat 1 26 0 9 1477 790 243 13 0 chr3 116995539 116995691 -42604092 + RSINE1 SINE B4 10 163 -2 9 1477 3106 106 20 33 chr3 116996521 116996970 -42602813 + Lx3A LINE L1 6533 6975 -6 9 1477 325 197 0 112 chr3 116997145 116997159 -42602624 + B3A SINE B2 1 5 -193 9 1477 279 286 82 12 chr3 116997159 116997244 -42602539 + RSINE1 SINE B4 2 92 -73 9 1477 705 310 46 85 chr3 116998270 116998577 -42601206 + MTE2a LTR MaLR 22 316 -63 9 1477 382 253 149 55 chr3 117000002 117000087 -42599696 - L1M5 LINE L1 -592 5581 5486 1 1477 954 71 0 0 chr3 117000087 117000214 -42599569 + (TCTA)n Simple_repeat Simple_repeat 4 130 0 2 1477 382 253 149 55 chr3 117000214 117000329 -42599454 - L1M5 LINE L1 -688 5485 5363 1 1477 338 332 37 28 chr3 117000902 117001116 -42598667 - L1M5 LINE L1 -3110 3036 2821 1 1477 503 266 109 0 chr3 117001182 117001310 -42598473 + RSINE1 SINE B4 7 148 -17 3 1477 305 244 214 17 chr3 117001357 117001474 -42598309 - L1M5 LINE L1 -3396 2750 2611 1 1477 503 295 13 26 chr3 117001990 117002216 -42597567 - L1M2 LINE L1 -772 5371 5149 4 1477 394 280 81 20 chr3 117002232 117002429 -42597354 + L1MA6 LINE L1 5968 6176 -124 5 1477 301 341 0 0 chr3 117002429 117002517 -42597266 + B4A SINE B4 1 88 -204 6 1477 338 279 0 93 chr3 117002530 117002692 -42597091 + Lx6 LINE L1 7284 7430 -30 7 1477 532 356 17 11 chr3 117002711 117002887 -42596896 + B4A SINE B4 83 259 -33 6 1477 219 328 0 0 chr3 117002887 117002948 -42596835 + (TATATG)n Simple_repeat Simple_repeat 1 61 0 8 1477 270 0 0 0 chr3 117002958 117002988 -42596795 + (CA)n Simple_repeat Simple_repeat 1 30 0 9 1477 273 200 0 44 chr3 117003011 117003079 -42596704 + L1MA6 LINE L1 6200 6264 -36 5 1477 1451 141 70 0 chr3 117004413 117004669 -42595114 + Lx2A1 LINE L1 6694 6967 -41 1 1477 366 189 10 78 chr3 117004720 117004823 -42594960 + Lx9 LINE L1 7543 7638 -6 1 1477 4071 84 82 5 chr3 117004874 117005552 -42594231 + Lx3B LINE L1 5966 6969 -4 1 1477 26 0 0 0 chr3 117005561 117005587 -42594196 + AT_rich Low_complexity Low_complexity 1 26 0 1 1477 226 331 78 107 chr3 117006042 117006350 -42593433 - ORR1E LTR MaLR -55 304 6 1 1477 258 152 116 39 chr3 117006585 117006662 -42593121 + L1MA7 LINE L1 5858 5939 -373 1 1477 296 258 87 35 chr3 117006641 117006690 -42593093 + L1MA7 LINE L1 6108 6156 -135 1 1477 697 11 11 0 chr3 117006690 117006783 -42593000 + L1Md_T LINE L1 6487 6580 -2 1 1477 296 258 87 35 chr3 117006783 117006906 -42592877 + L1MA7 LINE L1 6157 6289 -2 1 1477 300 296 176 67 chr3 117006988 117007300 -42592483 + HAL1 LINE L1 1688 2033 -474 1 1477 271 346 83 0 chr3 117007555 117007688 -42592095 - L2 LINE L2 -1399 2020 1877 1 1477 24 53 0 0 chr3 117007741 117007779 -42592004 + AT_rich Low_complexity Low_complexity 1 38 0 1 1477 548 197 142 97 chr3 117008100 117008347 -42591436 + Lx9 LINE L1 7379 7636 -8 2 1477 255 248 16 103 chr3 117008578 117008704 -42591079 - LTR40b LTR ERVL -31 431 317 2 1477 327 178 14 0 chr3 117008898 117008971 -42590812 - Lx7 LINE L1 -17 7679 7606 2 1477 37 39 0 0 chr3 117009224 117009275 -42590508 + AT_rich Low_complexity Low_complexity 1 51 0 2 1477 984 253 143 40 chr3 117009275 117009728 -42590055 - Lx8 LINE L1 -3 7470 6971 2 1477 28 0 0 0 chr3 117010183 117010211 -42589572 + AT_rich Low_complexity Low_complexity 1 28 0 2 1477 327 306 54 9 chr3 117011067 117011179 -42588604 + ID_B1 SINE B4 98 214 -10 2 1477 577 294 135 9 chr3 117011624 117011854 -42587929 - MLT1B LTR MaLR -129 261 3 2 1477 315 0 0 0 chr3 117012637 117012672 -42587111 + (T)n Simple_repeat Simple_repeat 1 35 0 2 1477 324 0 0 0 chr3 117013017 117013053 -42586730 + (TA)n Simple_repeat Simple_repeat 2 37 0 2 1477 748 166 66 22 chr3 117013247 117013383 -42586400 + B1_Mus2 SINE Alu 5 146 -1 3 1477 1356 221 44 18 chr3 117014009 117014349 -42585434 + Lx7 LINE L1 7036 7384 -312 3 1477 194 30 0 83 chr3 117014358 117014394 -42585389 + (TTTTTG)n Simple_repeat Simple_repeat 4 36 0 3 1477 26 50 0 0 chr3 117014459 117014499 -42585284 + AT_rich Low_complexity Low_complexity 1 40 0 3 1477 238 372 12 71 chr3 117015257 117015425 -42584358 - L2 LINE L2 -918 2501 2344 3 1477 925 256 5 0 chr3 117015437 117015652 -42584131 + B3 SINE B2 1 216 0 3 1477 447 19 0 0 chr3 117015745 117015797 -42583986 + (CA)n Simple_repeat Simple_repeat 1 52 0 3 1477 678 277 10 52 chr3 117015819 117016013 -42583770 + B4A SINE B4 106 291 -1 3 1477 186 122 45 68 chr3 117016451 117016495 -42583288 - L2a LINE L2 -271 3155 3113 3 1477 474 18 0 0 chr3 117016705 117016760 -42583023 + (TG)n Simple_repeat Simple_repeat 1 55 0 3 1477 811 229 0 0 chr3 117016763 117016907 -42582876 - B3A SINE B2 -47 151 8 4 1477 3313 52 0 0 chr3 117017245 117017652 -42582131 + L1_Mus1 LINE L1 6161 6567 0 4 1477 393 86 0 0 chr3 117018516 117018574 -42581209 + (CA)n Simple_repeat Simple_repeat 1 58 0 4 1477 742 302 103 51 chr3 117018579 117018822 -42580961 - L1MD LINE L1 -546 5813 5587 4 1477 1293 211 78 36 chr3 117018822 117019181 -42580602 + ORR1D1 LTR MaLR 1 374 0 4 1477 742 302 103 51 chr3 117019181 117019405 -42580378 - L1MD LINE L1 -773 5586 5322 4 1477 246 287 61 0 chr3 117019470 117019585 -42580198 + L1MD LINE L1 5089 5210 -936 4 1477 517 275 125 45 chr3 117019568 117019880 -42579903 + L1MA9 LINE L1 5963 6299 -13 4 1477 433 357 97 20 chr3 117021137 117021546 -42578237 + Kanga1a DNA Tc2 1 428 -326 4 1477 600 260 94 17 chr3 117021706 117021886 -42577897 - B3A SINE B2 0 198 5 4 1477 30 59 0 0 chr3 117022215 117022266 -42577517 + AT_rich Low_complexity Low_complexity 1 51 0 4 1477 846 98 0 0 chr3 117024007 117024129 -42575654 + (TTTC)n Simple_repeat Simple_repeat 2 123 0 5 1477 195 42 0 0 chr3 117026304 117026328 -42573455 + (GGGTG)n Simple_repeat Simple_repeat 3 26 0 5 1477 315 0 0 0 chr3 117028380 117028415 -42571368 + (TC)n Simple_repeat Simple_repeat 1 35 0 5 1477 414 0 0 0 chr3 117028415 117028461 -42571322 + (CA)n Simple_repeat Simple_repeat 1 46 0 5 1477 712 278 26 10 chr3 117031543 117031736 -42568047 - B3A SINE B2 -2 196 1 5 1477 720 254 5 36 chr3 117032838 117033030 -42566753 - B3A SINE B2 -12 186 1 5 1477 236 204 11 54 chr3 117033597 117033690 -42566093 + A-rich Low_complexity Low_complexity 2 90 0 5 1477 547 255 14 20 chr3 117034091 117034239 -42565544 + ID_B1 SINE B4 78 224 0 5 1477 23 0 0 0 chr3 117034318 117034341 -42565442 + AT_rich Low_complexity Low_complexity 1 23 0 5 1477 971 305 70 32 chr3 117036666 117037262 -42562521 + L1MA6 LINE L1 5318 5936 -364 5 1477 29 28 0 0 chr3 117037625 117037661 -42562122 + AT_rich Low_complexity Low_complexity 1 36 0 6 1477 270 0 0 0 chr3 117037757 117037787 -42561996 + (TG)n Simple_repeat Simple_repeat 1 30 0 6 1477 558 29 0 0 chr3 117037787 117037854 -42561929 + (GA)n Simple_repeat Simple_repeat 1 68 0 6 1477 9402 82 15 0 chr3 117038647 117040551 -42559232 + L1_Mus1 LINE L1 4616 6557 -10 6 1477 203 0 37 0 chr3 117040551 117040578 -42559205 + (TA)n Simple_repeat Simple_repeat 2 29 0 6 1477 22 0 0 0 chr3 117041097 117041119 -42558664 + AT_rich Low_complexity Low_complexity 1 22 0 6 1477 360 275 92 17 chr3 117041305 117041479 -42558304 + MER53 DNA hAT 6 192 -1 6 1477 244 316 26 0 chr3 117041510 117041586 -42558197 + B4A SINE B4 201 278 -14 6 1477 2257 243 27 2 chr3 117042429 117042903 -42556880 - Lx5 LINE L1 -8 7042 6557 6 1477 21 0 0 0 chr3 117042904 117042925 -42556858 + AT_rich Low_complexity Low_complexity 1 21 0 6 1477 180 277 86 70 chr3 117043727 117043855 -42555928 + MIR SINE MIR 16 145 -63 7 1477 480 188 109 0 chr3 117044038 117044166 -42555617 + Tigger7 DNA MER2_type 2276 2417 -74 7 1477 433 0 35 0 chr3 117044337 117044394 -42555389 + (TTTTG)n Simple_repeat Simple_repeat 2 60 0 7 1477 351 0 0 0 chr3 117044771 117044810 -42554973 + (TG)n Simple_repeat Simple_repeat 2 40 0 7 1477 233 204 0 53 chr3 117047029 117047080 -42552703 + B4A SINE B4 182 229 -63 7 1477 354 274 15 168 chr3 117047080 117047282 -42552501 + B4 SINE B4 1 171 -121 7 1478 229 192 0 0 chr3 117047345 117047397 -42552386 + (CA)n Simple_repeat Simple_repeat 1 52 0 7 1478 180 276 53 71 chr3 117047962 117048075 -42551708 + MIR SINE MIR 41 151 -57 7 1478 24 32 0 0 chr3 117049970 117050001 -42549782 + AT_rich Low_complexity Low_complexity 1 31 0 7 1478 510 17 0 0 chr3 117050116 117050175 -42549608 + (GA)n Simple_repeat Simple_repeat 1 59 0 7 1478 301 395 52 13 chr3 117050785 117051016 -42548767 - MIR SINE MIR -22 240 1 8 1478 298 292 40 40 chr3 117051474 117051574 -42548209 + BC1_Mm scRNA scRNA 2 101 -51 8 1478 203 341 108 86 chr3 117052099 117052378 -42547405 + L4 LINE RTE 640 924 -1105 8 1478 325 85 0 60 chr3 117052482 117052532 -42547251 - HAL1-3A_ME LINE L1 -835 2023 1977 8 1478 290 285 24 0 chr3 117052532 117052697 -42547086 + (TG)n Simple_repeat Simple_repeat 1 169 0 8 1478 269 296 23 0 chr3 117052741 117052913 -42546870 + (TG)n Simple_repeat Simple_repeat 1 176 0 8 1478 326 272 25 0 chr3 117052926 117053088 -42546695 + (TG)n Simple_repeat Simple_repeat 1 166 0 8 1478 455 340 81 43 chr3 117053144 117053402 -42546381 - B4A SINE B4 -23 269 2 8 1478 5491 21 0 0 chr3 117053940 117054571 -42545212 - L1Md_T LINE L1 -365 6217 5587 8 1478 2765 48 0 0 chr3 117054580 117054916 -42544867 + L1Md_T LINE L1 6246 6581 -1 8 1478 744 279 71 41 chr3 117054917 117055186 -42544597 + Lx8 LINE L1 6977 7253 -220 8 1478 507 33 0 0 chr3 117055433 117055494 -42544289 + (TA)n Simple_repeat Simple_repeat 1 61 0 8 1478 249 331 117 19 chr3 117056304 117056458 -42543325 + MIRb SINE MIR 5 173 -95 8 1478 265 62 0 40 chr3 117056578 117056628 -42543155 + (CAAAA)n Simple_repeat Simple_repeat 3 50 0 9 1478 203 291 0 0 chr3 117056740 117056795 -42542988 + (TTA)n Simple_repeat Simple_repeat 3 57 0 9 1478 202 304 0 0 chr3 117058182 117058228 -42541555 + (CAA)n Simple_repeat Simple_repeat 2 47 0 9 1478 328 236 11 22 chr3 117058560 117058651 -42541132 - PB1 SINE Alu 0 127 38 9 1478 345 174 0 0 chr3 117058896 117058965 -42540818 + (TATG)n Simple_repeat Simple_repeat 2 70 0 9 1478 307 352 7 96 chr3 117058968 117059103 -42540680 - RSINE1 SINE B4 0 165 43 9 1478 2518 90 38 20 chr3 117059762 117060160 -42539623 + L1_Mur1 LINE L1 4857 5261 -625 9 1478 469 308 15 8 chr3 117060678 117060809 -42538974 + ID_B1 SINE B4 85 216 -8 9 1478 372 43 0 0 chr3 117061289 117061335 -42538448 + (A)n Simple_repeat Simple_repeat 1 46 0 9 1478 414 39 0 0 chr3 117062170 117062222 -42537561 + (CA)n Simple_repeat Simple_repeat 1 52 0 9 1478 220 316 0 0 chr3 117062253 117062329 -42537454 + (TATATG)n Simple_repeat Simple_repeat 6 81 0 1 1478 183 291 75 12 chr3 117064648 117064728 -42535055 + L2 LINE L2 2778 2862 -557 1 1478 511 211 6 24 chr3 117065001 117065171 -42534612 + CT-rich Low_complexity Low_complexity 1 167 0 1 1478 628 230 37 48 chr3 117065173 117065360 -42534423 - B2_Mm2 SINE B2 -10 185 1 1 1478 261 333 21 11 chr3 117066433 117066527 -42533256 + Lx8 LINE L1 7128 7222 -251 1 1478 666 99 30 15 chr3 117066531 117066664 -42533119 + (TA)n Simple_repeat Simple_repeat 1 135 0 1 1478 1215 61 0 0 chr3 117067860 117068008 -42531775 - B1_Mus1 SINE Alu 0 148 1 1 1478 22 35 0 0 chr3 117068058 117068087 -42531696 + AT_rich Low_complexity Low_complexity 1 29 0 1 1478 3076 66 2 12 chr3 117068153 117068553 -42531230 - MTA_Mm LTR MaLR 0 396 1 1 1478 959 301 7 21 chr3 117068700 117068982 -42530801 + B4A SINE B4 1 278 -14 1 1478 1068 97 0 0 chr3 117069065 117069210 -42530573 + B2_Mm2 SINE B2 1 145 -50 1 1478 342 0 0 0 chr3 117069220 117069258 -42530525 + (CCAA)n Simple_repeat Simple_repeat 2 39 0 1 1478 15863 121 29 19 chr3 117069261 117073151 -42526632 + Lx4A LINE L1 3124 7058 0 1 1478 22 0 0 0 chr3 117073156 117073178 -42526605 + AT_rich Low_complexity Low_complexity 1 22 0 1 1478 216 0 0 0 chr3 117074932 117074956 -42524827 + (GGGTG)n Simple_repeat Simple_repeat 3 26 0 1 1478 1961 249 36 226 chr3 117074956 117075305 -42524478 - RMER12 LTR ERVK -10 1312 992 1 1478 1042 95 0 27 chr3 117075305 117075489 -42524294 + (GAAAA)n Simple_repeat Simple_repeat 2 180 0 1 1478 225 0 0 0 chr3 117075489 117075514 -42524269 + (GGAAA)n Simple_repeat Simple_repeat 1 25 0 1 1478 1961 249 36 226 chr3 117075514 117076783 -42523000 - RMER12 LTR ERVK -331 991 2 1 1478 342 115 0 0 chr3 117077105 117077157 -42522626 + (TG)n Simple_repeat Simple_repeat 1 52 0 1 1478 292 393 18 0 chr3 117078074 117078186 -42521597 + MER58B DNA MER1_type 202 315 -26 1 1478 641 221 27 20 chr3 117079014 117079162 -42520621 - B3 SINE B2 0 216 68 1 1478 459 52 0 0 chr3 117079296 117079354 -42520429 + (CAAG)n Simple_repeat Simple_repeat 2 59 0 1 1478 4157 153 28 42 chr3 117079379 117079878 -42519905 - Lx5 LINE L1 -1342 5667 5177 1 1478 1939 127 62 23 chr3 117079878 117080232 -42519551 + RLTR9A LTR ERVK 1 368 0 1 1478 4157 166 27 31 chr3 117080232 117080623 -42519160 - Lx5 LINE L1 -701 5176 4781 1 1478 5858 171 98 16 chr3 117080619 117081861 -42517922 + Lx2B LINE L1 5656 6999 -1 1 1478 3048 17 43 0 chr3 117082086 117082438 -42517345 + IAPLTR1_Mm LTR ERVK 1 367 0 1 1478 53213 21 16 1 chr3 117082438 117088816 -42510967 + IAPEz-int LTR ERVK 8 6481 0 1 1478 3059 14 43 0 chr3 117088816 117089168 -42510615 + IAPLTR1_Mm LTR ERVK 1 367 0 1 1478 438 36 0 0 chr3 117089769 117089825 -42509958 + (CA)n Simple_repeat Simple_repeat 2 57 0 1 1478 386 320 0 120 chr3 117090083 117090250 -42509533 - B1_Mm SINE Alu 0 147 1 1 1478 443 259 107 13 chr3 117090470 117090695 -42509088 - L1MA5 LINE L1 -368 5932 5693 1 1478 1219 281 53 31 chr3 117090717 117091168 -42508615 - RMER5 LTR ERV1 -15 519 59 1 1478 345 304 36 14 chr3 117091277 117091460 -42508323 - L1MA5 LINE L1 -641 5671 5488 1 1478 30 0 0 0 chr3 117091756 117091786 -42507997 + AT_rich Low_complexity Low_complexity 1 30 0 1 1478 4664 223 90 4 chr3 117091793 117092928 -42506855 - Lx5 LINE L1 -5 7045 5814 1 1478 26 0 0 0 chr3 117093376 117093402 -42506381 + AT_rich Low_complexity Low_complexity 1 26 0 1 1478 348 88 0 0 chr3 117094104 117094161 -42505622 + (CA)n Simple_repeat Simple_repeat 2 58 0 1 1478 468 0 0 0 chr3 117094161 117094212 -42505571 + (GA)n Simple_repeat Simple_repeat 2 53 0 1 1478 756 336 52 17 chr3 117094261 117094549 -42505234 + MLT1A0 LTR MaLR 8 305 -60 1 1478 348 24 0 0 chr3 117094565 117094606 -42505177 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 1478 1665 203 30 30 chr3 117094744 117095110 -42504673 + ORR1D1 LTR MaLR 5 370 -4 1 1478 697 146 39 32 chr3 117095771 117095927 -42503856 + Lx4A LINE L1 6900 7056 -2 1 1478 432 371 22 15 chr3 117098134 117098405 -42501378 - L3 LINE CR1 -613 3876 3604 1 1478 1463 247 39 22 chr3 117098807 117099167 -42500616 + MTE2b LTR MaLR 1 366 -13 1 1478 984 284 85 177 chr3 117099420 117099511 -42500272 + MER44D DNA MER2_type 7 97 -608 1 1478 591 297 124 12 chr3 117099511 117099760 -42500023 + B4 SINE B4 1 277 -15 1 1478 984 284 85 177 chr3 117099760 117100409 -42499374 + MER44D DNA MER2_type 98 679 -26 1 1478 644 272 6 80 chr3 117100474 117100650 -42499133 + RSINE1 SINE B4 3 165 0 1 1478 194 355 44 35 chr3 117101223 117101337 -42498446 + MIR3 SINE MIR 65 179 -29 1 1478 23 33 0 0 chr3 117101532 117101562 -42498221 + AT_rich Low_complexity Low_complexity 1 30 0 1 1478 329 75 19 0 chr3 117102234 117102287 -42497496 + (TAAAA)n Simple_repeat Simple_repeat 2 55 0 1 1478 8048 139 26 13 chr3 117102353 117104108 -42495675 + Lx2 LINE L1 5219 6991 -6 1 1478 336 316 21 0 chr3 117104657 117104824 -42494959 + L1M2 LINE L1 2382 2584 -3965 1 1478 441 302 52 17 chr3 117104853 117105143 -42494640 + L1_Mur2 LINE L1 4972 5271 -606 1 1478 225 204 0 0 chr3 117105200 117105244 -42494539 + A-rich Low_complexity Low_complexity 1 44 0 1 1478 233 254 48 0 chr3 117105347 117105410 -42494373 + L1M2 LINE L1 5486 5551 -761 1 1478 1158 107 0 0 chr3 117105554 117105759 -42494024 + (TCTA)n Simple_repeat Simple_repeat 1 205 0 1 1478 25 51 0 0 chr3 117107579 117107618 -42492165 + AT_rich Low_complexity Low_complexity 1 39 0 1 1478 219 167 0 0 chr3 117107618 117107660 -42492123 + (TG)n Simple_repeat Simple_repeat 1 42 0 1 1478 526 288 0 0 chr3 117107662 117107773 -42492010 - RSINE1 SINE B4 0 165 55 1 1478 198 143 0 0 chr3 117107792 117107827 -42491956 + (TA)n Simple_repeat Simple_repeat 2 36 0 1 1478 5216 55 6 1 chr3 117107863 117108558 -42491225 + L1Md_F2 LINE L1 5911 6582 0 1 1478 926 137 139 20 chr3 117108582 117108783 -42491000 + URR1A DNA MER1_type 2 226 0 1 1478 537 323 37 21 chr3 117109154 117109311 -42490472 + MLT1A0 LTR MaLR 1 160 -205 1 1478 441 285 41 7 chr3 117109311 117109397 -42490386 + RMER30 DNA MER1_type 2 91 -111 1 1478 225 0 0 0 chr3 117109397 117109422 -42490361 + (TG)n Simple_repeat Simple_repeat 2 26 0 1 1478 441 285 41 7 chr3 117109422 117109480 -42490303 + RMER30 DNA MER1_type 92 150 -52 1 1478 415 303 84 0 chr3 117109569 117109724 -42490059 + MLT1A0 LTR MaLR 192 359 -6 1 1478 491 209 0 8 chr3 117110728 117110858 -42488925 - Lx9 LINE L1 0 7644 7516 1 1478 371 313 17 9 chr3 117111271 117111387 -42488396 - PB1D10 SINE Alu 0 117 1 1 1478 200 244 53 128 chr3 117111754 117111848 -42487935 + L4 LINE RTE 1462 1548 -481 1 1478 773 247 41 41 chr3 117111976 117112170 -42487613 + B3A SINE B2 2 195 -3 1 1478 233 273 30 0 chr3 117112217 117112283 -42487500 + GA-rich Low_complexity Low_complexity 1 68 0 1 1478 21 0 0 0 chr3 117112738 117112759 -42487024 + AT_rich Low_complexity Low_complexity 1 21 0 1 1478 243 0 0 0 chr3 117112973 117113000 -42486783 + (TG)n Simple_repeat Simple_repeat 2 28 0 1 1478 783 286 58 0 chr3 117113012 117113183 -42486600 - B3A SINE B2 -16 182 2 1 1478 755 0 25 34 chr3 117114022 117114141 -42485642 + (TTCTC)n Simple_repeat Simple_repeat 5 122 0 1 1478 211 164 18 18 chr3 117115233 117115289 -42484494 + (CAA)n Simple_repeat Simple_repeat 2 57 0 1 1478 414 0 0 0 chr3 117116542 117116588 -42483195 + (TG)n Simple_repeat Simple_repeat 2 47 0 1 1478 1150 295 18 30 chr3 117117025 117117149 -42482634 - Lx8 LINE L1 -2 7471 7349 1 1478 336 24 0 0 chr3 117117149 117117190 -42482593 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 1478 1150 295 18 30 chr3 117117190 117117502 -42482281 - Lx8 LINE L1 -125 7348 7040 1 1478 666 85 0 0 chr3 117117525 117117619 -42482164 + (TTTC)n Simple_repeat Simple_repeat 2 95 0 1 1478 1068 129 0 0 chr3 117117623 117117793 -42481990 + (TCC)n Simple_repeat Simple_repeat 2 171 0 1 1478 185 264 14 0 chr3 117117876 117117948 -42481835 + GA-rich Low_complexity Low_complexity 3 75 0 1 1478 456 139 0 0 chr3 117117939 117118018 -42481765 + (GGGA)n Simple_repeat Simple_repeat 3 81 0 1 1478 1137 227 25 8 chr3 117118639 117118879 -42480904 + Lx6 LINE L1 7040 7283 -177 1 1478 385 396 6 30 chr3 117119049 117119213 -42480570 + RSINE1 SINE B4 3 162 -3 1 1478 4002 114 28 0 chr3 117119367 117119972 -42479811 - Lx3B LINE L1 0 6973 6352 1 1478 1171 196 23 0 chr3 117120017 117120237 -42479546 - URR1B DNA MER1_type 0 225 1 1 1478 210 391 26 0 chr3 117120693 117120808 -42478975 - B1_Mm SINE Alu -19 128 11 1 1478 418 278 65 0 chr3 117120706 117120814 -42478969 - ID_B1 SINE B4 -29 195 81 1 1478 28 0 0 0 chr3 117123418 117123446 -42476337 + AT_rich Low_complexity Low_complexity 1 28 0 1 1478 1080 231 102 0 chr3 117124370 117124625 -42475158 - RMER15 LTR ERVL 0 575 295 1 1478 479 232 31 31 chr3 117124653 117124782 -42475001 - RMER15 LTR ERVL -420 155 27 1 1478 953 18 0 0 chr3 117125516 117125630 -42474153 - B1_Mm SINE Alu -9 138 25 1 1478 606 268 13 32 chr3 117125960 117126118 -42473665 - RSINE1 SINE B4 -10 155 1 1 1478 1671 47 5 0 chr3 117126161 117126373 -42473410 - L1Md_A LINE L1 0 6582 6370 1 1478 1802 232 30 16 chr3 117126404 117126768 -42473015 - ORR1D1 LTR MaLR 0 374 6 1 1478 620 124 0 9 chr3 117127289 117127395 -42472388 + (TCTCCC)n Simple_repeat Simple_repeat 5 109 0 1 1478 484 330 112 8 chr3 117127560 117127848 -42471935 + MLT1F1 LTR MaLR 211 563 -6 1 1478 21 36 0 0 chr3 117128060 117128088 -42471695 + AT_rich Low_complexity Low_complexity 1 28 0 1 1478 22 35 0 0 chr3 117128374 117128403 -42471380 + AT_rich Low_complexity Low_complexity 1 29 0 1 1478 299 264 68 97 chr3 117128697 117128873 -42470910 + RLTR15 LTR ERVK 1 171 -188 1 1478 414 240 57 96 chr3 117128885 117129115 -42470668 + RLTR15 LTR ERVK 120 340 -19 1 1478 669 276 66 105 chr3 117129186 117129613 -42470170 + MTC LTR MaLR 5 389 -30 1 1478 297 51 0 0 chr3 117130939 117130978 -42468805 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 1 1478 1048 242 127 32 chr3 117131802 117132140 -42467643 + MTEa LTR MaLR 6 375 -4 1 1478 2922 9 3 0 chr3 117133276 117133617 -42466166 - MTA_Mm LTR MaLR -54 342 1 2 1478 3551 22 42 2 chr3 117133617 117134066 -42465717 - MTA_Mm-int LTR MaLR 0 1098 632 2 1478 860 297 75 50 chr3 117134370 117134816 -42464967 - L1MA6 LINE L1 -71 6229 5768 2 1478 641 246 94 6 chr3 117134816 117134980 -42464803 + B3A SINE B2 1 175 -23 2 1478 390 74 0 0 chr3 117134980 117135034 -42464749 + (CA)n Simple_repeat Simple_repeat 1 54 0 2 1478 641 246 94 6 chr3 117135034 117135049 -42464734 + B3A SINE B2 176 196 -2 2 1478 860 292 78 96 chr3 117135049 117135228 -42464555 - L1MA6 LINE L1 -389 5767 5588 2 1478 540 311 61 0 chr3 117135228 117135408 -42464375 - B3A SINE B2 -7 191 1 2 1478 295 292 78 96 chr3 117135408 117135462 -42464321 - L1MA6 LINE L1 -569 5587 5543 2 1478 624 239 9 23 chr3 117135580 117135794 -42463989 + L1M2 LINE L1 5254 5464 -836 2 1478 294 29 0 0 chr3 117136301 117136336 -42463447 + (CAA)n Simple_repeat Simple_repeat 2 36 0 2 1478 342 0 0 0 chr3 117136579 117136617 -42463166 + (TG)n Simple_repeat Simple_repeat 2 39 0 2 1478 456 35 0 0 chr3 117137107 117137165 -42462618 + (CA)n Simple_repeat Simple_repeat 2 59 0 2 1478 2775 134 87 28 chr3 117137165 117137594 -42462189 + RLTR20A LTR ERVK 4 439 -102 2 1478 417 20 0 0 chr3 117137594 117137644 -42462139 + (TG)n Simple_repeat Simple_repeat 2 51 0 2 1478 2775 134 87 28 chr3 117137644 117137719 -42462064 + RLTR20A LTR ERVK 440 538 -3 2 1478 288 0 0 0 chr3 117137719 117137751 -42462032 + (CA)n Simple_repeat Simple_repeat 2 33 0 2 1478 520 205 89 13 chr3 117138029 117138187 -42461596 + Lx4B LINE L1 6889 7058 0 2 1478 219 69 0 0 chr3 117138833 117138862 -42460921 + (T)n Simple_repeat Simple_repeat 1 29 0 2 1478 583 289 14 72 chr3 117139152 117139361 -42460422 - B3A SINE B2 0 198 2 2 1478 200 191 0 0 chr3 117139464 117139506 -42460277 + A-rich Low_complexity Low_complexity 5 46 0 2 1478 308 258 137 69 chr3 117139522 117139697 -42460086 + L1MD LINE L1 5207 5393 -753 2 1478 609 262 70 62 chr3 117140107 117140380 -42459403 - B4 SINE B4 -15 277 3 2 1478 915 226 36 85 chr3 117140383 117140664 -42459119 + MT2A LTR ERVL 1 267 -266 2 1478 581 201 0 32 chr3 117140764 117140949 -42458834 + CT-rich Low_complexity Low_complexity 1 179 0 2 1478 216 0 0 0 chr3 117141454 117141478 -42458305 + (TA)n Simple_repeat Simple_repeat 2 25 0 2 1478 377 284 125 52 chr3 117141963 117142268 -42457515 - L1M5 LINE L1 -2675 3471 3145 2 1478 922 26 74 7 chr3 117142717 117142989 -42456794 + (TG)n Simple_repeat Simple_repeat 1 290 0 2 1478 258 365 100 21 chr3 117143053 117143381 -42456402 + L2b LINE L2 2929 3284 -103 2 1478 712 201 14 14 chr3 117143685 117143826 -42455957 + B1_Mur2 SINE Alu 2 142 -7 2 1478 780 111 0 0 chr3 117143827 117143944 -42455839 + (CAGGA)n Simple_repeat Simple_repeat 2 118 0 2 1478 193 75 24 24 chr3 117143972 117144013 -42455770 + (CAA)n Simple_repeat Simple_repeat 2 42 0 2 1478 205 293 0 0 chr3 117144201 117144259 -42455524 - L2c LINE L2 -37 3350 3293 2 1478 984 151 0 0 chr3 117146413 117146592 -42453191 + CT-rich Low_complexity Low_complexity 2 180 0 2 1478 189 0 0 0 chr3 117146592 117146612 -42453171 + (TTTC)n Simple_repeat Simple_repeat 4 24 0 2 1478 6552 118 31 14 chr3 117147081 117148716 -42451067 - Lx LINE L1 -7 6647 4985 2 1478 1744 158 0 0 chr3 117148713 117149016 -42450767 + Lx LINE L1 4693 4995 -888 2 1478 201 319 14 0 chr3 117149712 117149781 -42450002 + GA-rich Low_complexity Low_complexity 3 72 0 2 1478 208 104 0 59 chr3 117150068 117150119 -42449664 + (TTTG)n Simple_repeat Simple_repeat 2 49 0 2 1478 352 281 114 19 chr3 117151525 117151630 -42448153 + B4A SINE B4 174 288 -4 2 1478 432 0 0 0 chr3 117151740 117151788 -42447995 + (GA)n Simple_repeat Simple_repeat 1 48 0 2 1478 1082 110 0 0 chr3 117152380 117152526 -42447257 - B1_Mus1 SINE Alu 0 148 3 2 1478 721 223 0 39 chr3 117152556 117152710 -42447073 + B1_Mur1 SINE Alu 2 149 0 2 1478 281 77 29 44 chr3 117152713 117152781 -42447002 + A-rich Low_complexity Low_complexity 2 68 0 2 1478 1835 194 8 30 chr3 117154163 117154535 -42445248 + ORR1B2 LTR MaLR 1 364 -3 2 1478 245 206 19 148 chr3 117154811 117154919 -42444864 + MTB_Mm LTR MaLR 205 298 -109 2 1478 513 164 137 12 chr3 117155039 117155200 -42444583 - Lx7 LINE L1 0 7696 7516 2 1478 571 208 70 37 chr3 117155311 117155481 -42444302 - ORR1C2 LTR MaLR -1 383 170 2 1478 1611 139 97 77 chr3 117156964 117157316 -42442467 - ORR1B1 LTR MaLR 0 419 36 2 1478 4967 35 25 0 chr3 117158048 117158649 -42441134 - L1Md_F2 LINE L1 0 6582 5967 2 1478 317 322 121 40 chr3 117158776 117159025 -42440758 + L2a LINE L2 2950 3218 -208 2 1478 325 216 0 13 chr3 117159852 117159927 -42439856 - MTE2a LTR MaLR -2 377 304 2 1478 284 211 184 0 chr3 117159923 117159999 -42439784 - B3 SINE B2 0 216 127 2 1478 324 0 0 0 chr3 117161053 117161089 -42438694 + (CA)n Simple_repeat Simple_repeat 1 36 0 2 1478 701 170 175 6 chr3 117161407 117161590 -42438193 - Lx7 LINE L1 -603 7093 6880 2 1478 219 69 0 0 chr3 117161664 117161693 -42438090 + (TTCC)n Simple_repeat Simple_repeat 4 32 0 2 1478 570 54 0 0 chr3 117161693 117161767 -42438016 + (TCTA)n Simple_repeat Simple_repeat 1 74 0 2 1478 1281 212 39 4 chr3 117161802 117162081 -42437702 + Lx7 LINE L1 6961 7249 -447 2 1478 504 0 0 0 chr3 117162100 117162156 -42437627 + (TAGA)n Simple_repeat Simple_repeat 1 56 0 2 1478 271 224 26 13 chr3 117165001 117165078 -42434705 + CT-rich Low_complexity Low_complexity 2 79 0 2 1478 474 157 0 0 chr3 117165079 117165162 -42434621 + (CA)n Simple_repeat Simple_repeat 2 84 0 2 1478 279 0 0 0 chr3 117165166 117165197 -42434586 + (TG)n Simple_repeat Simple_repeat 2 32 0 2 1478 798 204 91 26 chr3 117165214 117165446 -42434337 - Lx8 LINE L1 -344 7129 6883 2 1478 3092 53 12 12 chr3 117165680 117166080 -42433703 + MTB LTR MaLR 1 400 0 2 1478 420 263 8 116 chr3 117166117 117166219 -42433564 + MER57E1 LTR ERV1 242 329 -43 2 1478 1211 48 0 0 chr3 117166219 117166365 -42433418 - B1_Mm SINE Alu 0 147 2 2 1478 420 263 8 116 chr3 117166365 117166391 -42433392 + MER57E1 LTR ERV1 330 356 -16 2 1478 234 339 46 0 chr3 117166395 117166460 -42433323 + tRNA-Ala-GCY_ tRNA tRNA 2 69 -6 2 1478 200 232 18 0 chr3 117166460 117166516 -42433267 + GA-rich Low_complexity Low_complexity 4 60 0 2 1478 668 303 38 21 chr3 117167347 117167576 -42432207 + B4A SINE B4 1 233 -59 2 1478 964 288 0 0 chr3 117167576 117167791 -42431992 + B3 SINE B2 2 216 0 2 1478 342 0 0 0 chr3 117167875 117167913 -42431870 + (CA)n Simple_repeat Simple_repeat 2 39 0 2 1478 243 101 62 12 chr3 117167951 117168031 -42431752 + (TA)n Simple_repeat Simple_repeat 2 85 0 2 1478 260 110 59 35 chr3 117168077 117168162 -42431621 + (TA)n Simple_repeat Simple_repeat 1 87 0 2 1478 304 169 13 13 chr3 117168192 117168270 -42431513 + (TA)n Simple_repeat Simple_repeat 2 79 0 2 1478 303 28 0 0 chr3 117168574 117168610 -42431173 + (TG)n Simple_repeat Simple_repeat 1 36 0 2 1478 2420 169 16 12 chr3 117168618 117169042 -42430741 - Lx4B LINE L1 -3 7055 6630 2 1478 3448 158 106 3 chr3 117169042 117169721 -42430062 + Lx4B LINE L1 5888 6636 -422 2 1478 1754 167 128 3 chr3 117170179 117170522 -42429261 + ORR1B1 LTR MaLR 1 386 -8 2 1478 970 297 144 33 chr3 117171273 117171941 -42427842 - Lx9 LINE L1 -54 7590 6849 2 1478 878 299 71 55 chr3 117172640 117173053 -42426730 - MTE2a LTR MaLR 0 419 1 2 1478 495 198 6 19 chr3 117175397 117175467 -42424316 + polypyrimidine Low_complexity Low_complexity 92 160 0 2 1478 1265 51 6 0 chr3 117175467 117175645 -42424138 + (TCTCC)n Simple_repeat Simple_repeat 2 180 0 2 1478 495 198 6 19 chr3 117175645 117175734 -42424049 + polypyrimidine Low_complexity Low_complexity 3 91 0 2 1478 540 309 5 37 chr3 117176564 117176712 -42423071 + B3A SINE B2 15 157 -41 2 1478 261 0 0 0 chr3 117176712 117176741 -42423042 + (CA)n Simple_repeat Simple_repeat 1 29 0 2 1478 540 309 5 37 chr3 117176741 117176780 -42423003 + B3A SINE B2 158 195 -3 2 1478 1828 164 37 3 chr3 117176829 117177153 -42422630 + ORR1B1 LTR MaLR 52 386 -8 2 1478 339 303 35 7 chr3 117177286 117177429 -42422354 + L1_Mur3 LINE L1 97 222 -7506 2 1478 619 164 23 8 chr3 117177425 117177554 -42422229 + L1_Mur3 LINE L1 3436 3566 -2314 2 1478 700 301 5 14 chr3 117177545 117177767 -42422016 + Lx6 LINE L1 7232 7451 -9 2 1479 25 65 0 0 chr3 117178505 117178551 -42421232 + AT_rich Low_complexity Low_complexity 1 46 0 2 1479 419 225 67 47 chr3 117178628 117178777 -42421006 + ID_B1 SINE B4 1 152 -72 2 1479 294 237 0 0 chr3 117178859 117178935 -42420848 + A-rich Low_complexity Low_complexity 1 76 0 2 1479 222 136 0 0 chr3 117179044 117179088 -42420695 + (TTTA)n Simple_repeat Simple_repeat 2 45 0 2 1479 3216 57 2 0 chr3 117179096 117179497 -42420286 - L1_Mus2 LINE L1 -1 6565 6164 2 1479 589 84 21 0 chr3 117179497 117179592 -42420191 + L1_Mus2 LINE L1 6063 6159 -407 2 1479 581 245 49 49 chr3 117179647 117179810 -42419973 + RSINE1 SINE B4 3 165 0 2 1479 611 109 20 0 chr3 117180449 117180550 -42419233 + (TTTC)n Simple_repeat Simple_repeat 2 104 0 2 1479 408 20 0 0 chr3 117181356 117181405 -42418378 + (TATG)n Simple_repeat Simple_repeat 2 50 0 2 1479 1680 226 40 24 chr3 117181408 117181780 -42418003 + MTD LTR MaLR 30 407 -12 2 1479 2355 61 29 6 chr3 117181841 117182155 -42417628 - L1_Mus1 LINE L1 0 6567 6247 2 1479 214 269 14 29 chr3 117183780 117183849 -42415934 + CT-rich Low_complexity Low_complexity 1 68 0 2 1479 647 303 126 66 chr3 117184748 117184928 -42414855 - MLT1B LTR MaLR -4 386 203 2 1479 2668 152 8 29 chr3 117184928 117185409 -42414374 - Lx LINE L1 -2 6652 6182 2 1479 647 303 126 66 chr3 117185409 117185592 -42414191 - MLT1B LTR MaLR -188 202 2 2 1479 1068 270 57 134 chr3 117185778 117186180 -42413603 - MTEa LTR MaLR -8 371 1 2 1479 835 279 108 31 chr3 117186992 117187343 -42412440 - MTEa LTR MaLR 0 379 2 2 1479 230 282 28 28 chr3 117189655 117189761 -42410022 + Lx8 LINE L1 7361 7466 -7 2 1479 667 144 7 21 chr3 117189984 117190126 -42409657 + Lx9 LINE L1 7497 7636 -8 2 1479 21 0 0 0 chr3 117190135 117190156 -42409627 + AT_rich Low_complexity Low_complexity 1 21 0 2 1479 226 281 49 66 chr3 117190226 117190348 -42409435 - LTR45 LTR ERV1 -36 489 370 2 1479 1390 5 5 19 chr3 117191476 117191684 -42408099 + (TG)n Simple_repeat Simple_repeat 1 204 0 2 1479 461 301 24 53 chr3 117192264 117192471 -42407312 - MLT1D LTR MaLR -62 443 243 2 1479 520 257 0 89 chr3 117192568 117192692 -42407091 - RSINE1 SINE B4 0 165 53 3 1479 21 0 0 0 chr3 117192692 117192713 -42407070 + AT_rich Low_complexity Low_complexity 1 21 0 3 1479 510 96 0 0 chr3 117192722 117192795 -42406988 + (TTCC)n Simple_repeat Simple_repeat 4 76 0 3 1479 13900 82 21 12 chr3 117192795 117195864 -42403919 - Lx3A LINE L1 0 6981 3890 3 1479 297 351 5 83 chr3 117195902 117196099 -42403684 - MLT1D LTR MaLR -323 182 3 2 1479 605 238 7 13 chr3 117196681 117196830 -42402953 + B1_Mur1 SINE Alu 1 148 -1 3 1479 215 169 62 0 chr3 117196830 117196895 -42402888 + (TA)n Simple_repeat Simple_repeat 2 70 0 3 1479 617 276 72 16 chr3 117197126 117197332 -42402451 + B3 SINE B2 1 195 0 3 1479 313 260 193 0 chr3 117198582 117198732 -42401051 + Lx8 LINE L1 7267 7445 -28 3 1479 654 183 6 12 chr3 117198737 117198903 -42400880 + (CA)n Simple_repeat Simple_repeat 2 166 0 3 1479 246 342 62 9 chr3 117199992 117200104 -42399679 - ORR1E LTR MaLR -241 118 1 3 1479 314 262 155 0 chr3 117200273 117200357 -42399426 + B1F SINE Alu 1 97 -52 3 1479 25 51 0 0 chr3 117200372 117200411 -42399372 + AT_rich Low_complexity Low_complexity 1 39 0 3 1479 2377 129 91 7 chr3 117201392 117201799 -42397984 + BGLII_B LTR ERVK 1 441 0 3 1479 248 265 184 14 chr3 117201821 117202028 -42397755 + L1MEc LINE L1 56 297 -6103 3 1479 236 290 61 61 chr3 117202071 117202218 -42397565 + L1MEc LINE L1 402 548 -5852 3 1479 764 122 43 0 chr3 117202516 117202680 -42397103 + GA-rich Low_complexity Low_complexity 1 171 0 3 1479 1280 273 30 36 chr3 117203225 117203586 -42396197 - ORR1D2 LTR MaLR 0 379 7 3 1479 427 278 208 8 chr3 117204300 117204536 -42395247 + L1MD1 LINE L1 5796 6078 -164 3 1479 275 321 0 12 chr3 117205178 117205260 -42394523 - ID4 SINE ID -1 82 2 3 1479 303 331 48 24 chr3 117205324 117205448 -42394335 - B2_Mm2 SINE B2 -68 127 1 3 1479 913 262 119 20 chr3 117205976 117206319 -42393464 - MTE2b LTR MaLR -1 378 2 3 1479 775 277 130 36 chr3 117206397 117206704 -42393079 + MTD LTR MaLR 30 365 -54 3 1479 1600 32 5 0 chr3 117207769 117207956 -42391827 - B2_Mm1t SINE B2 -5 188 1 3 1479 239 323 53 68 chr3 117207966 117208099 -42391684 + L2a LINE L2 3265 3395 -31 3 1479 252 317 111 24 chr3 117209876 117210083 -42389700 - L1MC1 LINE L1 -19 6314 6090 3 1479 596 320 62 59 chr3 117210126 117210415 -42389368 + B4A SINE B4 3 292 0 3 1479 26 0 0 0 chr3 117211513 117211539 -42388244 + AT_rich Low_complexity Low_complexity 1 26 0 3 1479 2745 75 3 3 chr3 117212126 117212488 -42387295 - L1_Mus1 LINE L1 -2 6565 6204 3 1479 29914 108 11 17 chr3 117212488 117217925 -42381858 - L1_Mus1 LINE L1 -453 6114 725 3 1479 332 286 15 8 chr3 117217927 117218061 -42381722 - L1_Mus1 LINE L1 -5807 809 675 3 1479 226 290 30 8 chr3 117218195 117218327 -42381456 - L1VL1 LINE L1 -6030 392 258 3 1479 222 288 0 12 chr3 117219133 117219214 -42380569 + GA-rich Low_complexity Low_complexity 1 80 0 3 1479 588 116 0 0 chr3 117219214 117219309 -42380474 + (GGA)n Simple_repeat Simple_repeat 3 97 0 3 1479 221 182 25 38 chr3 117219518 117219553 -42380230 + (TG)n Simple_repeat Simple_repeat 2 38 0 3 1479 201 39 0 0 chr3 117219553 117219579 -42380204 + (TC)n Simple_repeat Simple_repeat 2 27 0 3 1479 221 182 25 38 chr3 117219579 117219623 -42380160 + (TG)n Simple_repeat Simple_repeat 2 43 0 3 1479 600 14 0 0 chr3 117219928 117219997 -42379786 + (TC)n Simple_repeat Simple_repeat 2 70 0 3 1479 194 337 52 52 chr3 117220761 117220858 -42378925 - MIR SINE MIR -150 112 16 3 1479 299 379 32 58 chr3 117221147 117221259 -42378524 + RSINE1 SINE B4 2 109 -56 3 1479 3807 167 132 37 chr3 117221259 117222044 -42377739 + RMER13A LTR ERVK 1 860 0 3 1479 299 379 32 58 chr3 117222044 117222085 -42377698 + RSINE1 SINE B4 110 151 -14 3 1479 366 0 0 0 chr3 117222115 117222156 -42377627 + HAL1-3A_ME LINE L1 1972 2012 -846 3 1479 462 75 0 0 chr3 117222159 117222226 -42377557 + (CTA)n Simple_repeat Simple_repeat 1 67 0 3 1479 505 333 21 7 chr3 117222543 117222685 -42377098 - B3A SINE B2 -17 181 38 3 1479 598 248 108 0 chr3 117223329 117223458 -42376325 - B3 SINE B2 -6 210 68 3 1479 399 123 0 0 chr3 117223705 117223762 -42376021 + ORR1D2 LTR MaLR 3 59 -311 3 1479 368 265 48 19 chr3 117223742 117223846 -42375937 - ORR1E-int LTR MaLR -1262 108 2 3 1479 1184 275 16 43 chr3 117223849 117224218 -42375565 - ORR1E LTR MaLR 0 359 1 3 1479 236 293 24 0 chr3 117224305 117224387 -42375396 + (TG)n Simple_repeat Simple_repeat 1 84 0 3 1479 586 269 4 168 chr3 117224387 117224619 -42375164 - B4 SINE B4 -1 291 98 3 1479 250 264 78 86 chr3 117224721 117224747 -42375036 - B2_Mm2 SINE B2 -79 116 2 3 1479 271 310 11 33 chr3 117224747 117224837 -42374946 - B4 SINE B4 -203 89 2 3 1479 257 283 83 0 chr3 117225337 117225397 -42374386 + tRNA-Ala-GCY_ tRNA tRNA 3 67 -8 3 1479 22 70 0 0 chr3 117225397 117225440 -42374343 + AT_rich Low_complexity Low_complexity 1 43 0 3 1479 1178 48 7 0 chr3 117228350 117228496 -42371287 - B1_Mus2 SINE Alu 0 147 1 3 1479 1935 200 69 50 chr3 117229098 117229490 -42370293 + Lx9 LINE L1 7122 7517 -127 3 1479 460 0 33 0 chr3 117229490 117229550 -42370233 + (TG)n Simple_repeat Simple_repeat 1 62 0 3 1479 1935 200 69 50 chr3 117229550 117229661 -42370122 + Lx9 LINE L1 7518 7635 -9 3 1479 672 312 39 0 chr3 117230284 117230492 -42369291 + B3 SINE B2 1 216 0 3 1479 2542 274 9 95 chr3 117230635 117230889 -42368894 - Lx5 LINE L1 -4 7054 6877 3 1479 1192 34 0 13 chr3 117230889 117231038 -42368745 - B1_Mm SINE Alu 0 147 1 3 1479 3376 214 8 2 chr3 117231038 117231679 -42368104 - Lx5 LINE L1 -182 6876 6212 3 1479 35775 68 1 15 chr3 117232255 117238417 -42361366 - L1Md_F2 LINE L1 -2 6580 510 3 1479 376 274 18 28 chr3 117238444 117238553 -42361230 - L2a LINE L2 0 3426 3319 3 1479 430 276 32 16 chr3 117238804 117238929 -42360854 - ID_B1 SINE B4 -11 213 87 3 1479 282 232 18 136 chr3 117238855 117238965 -42360818 - MT2B2 LTR ERVL -346 238 142 3 1479 22 0 0 0 chr3 117239304 117239326 -42360457 + AT_rich Low_complexity Low_complexity 1 22 0 3 1479 388 247 11 23 chr3 117241076 117241163 -42358620 + B4A SINE B4 5 90 -202 3 1479 277 253 50 50 chr3 117241163 117241176 -42358607 + B3A SINE B2 5 104 -94 3 1479 6571 141 22 1 chr3 117241436 117242298 -42357485 - L1_Mur2 LINE L1 -266 5611 4731 3 1479 207 0 0 0 chr3 117242298 117242321 -42357462 + (TTTTG)n Simple_repeat Simple_repeat 1 23 0 3 1479 6571 124 331 1 chr3 117242321 117242602 -42357181 - L1_Mur2 LINE L1 -1147 4730 4358 3 1479 2972 106 2 3 chr3 117242703 117243207 -42356576 + Lx4A LINE L1 5441 5952 -1106 3 1479 264 59 0 0 chr3 117243886 117243920 -42355863 + (TG)n Simple_repeat Simple_repeat 1 34 0 3 1479 2078 43 23 4 chr3 117243958 117244217 -42355566 - L1_Mus2 LINE L1 -289 6277 6014 3 1479 2006 80 31 7 chr3 117244217 117244508 -42355275 + L1_Mus2 LINE L1 6269 6566 0 3 1479 285 281 0 0 chr3 117244885 117244974 -42354809 + Lx8 LINE L1 7383 7471 -2 3 1479 23 33 0 0 chr3 117244998 117245028 -42354755 + AT_rich Low_complexity Low_complexity 1 30 0 3 1479 1358 297 24 26 chr3 117246020 117246400 -42353383 + MTE2b LTR MaLR 1 379 0 3 1479 21 112 0 0 chr3 117246566 117246664 -42353119 + AT_rich Low_complexity Low_complexity 1 98 0 3 1479 320 391 80 57 chr3 117247522 117248088 -42351695 + L2c LINE L2 1368 1946 -1473 3 1479 2386 53 34 21 chr3 117248123 117248504 -42351279 + L1Md_F2 LINE L1 6230 6582 0 3 1479 318 234 0 0 chr3 117248726 117248790 -42350993 - RLTR19C LTR ERVK -410 96 33 3 1479 2543 92 11 3 chr3 117249263 117249634 -42350149 - L1_Mus3 LINE L1 0 6638 6265 3 1479 957 237 93 63 chr3 117249676 117250136 -42349647 + Lx7 LINE L1 7221 7694 -2 3 1479 861 10 0 0 chr3 117251305 117251403 -42348380 + (TC)n Simple_repeat Simple_repeat 1 98 0 3 1479 213 333 50 64 chr3 117251543 117251684 -42348099 + L2c LINE L2 2555 2693 -726 3 1479 271 340 117 29 chr3 117251923 117252162 -42347621 + L2c LINE L2 3058 3317 -70 3 1479 280 292 14 0 chr3 117252479 117252551 -42347232 + (CATA)n Simple_repeat Simple_repeat 2 74 0 3 1479 27 29 0 0 chr3 117252687 117252721 -42347062 + AT_rich Low_complexity Low_complexity 1 34 0 3 1479 576 278 113 45 chr3 117253475 117253763 -42346020 - ORR1D1 LTR MaLR -8 366 13 3 1479 209 33 0 32 chr3 117253782 117253813 -42345970 + (TAA)n Simple_repeat Simple_repeat 1 30 0 3 1479 2167 220 18 99 chr3 117255694 117256359 -42343424 + RMER19C LTR ERVK 1 611 0 3 1479 216 0 0 0 chr3 117256704 117256728 -42343055 + (CAAA)n Simple_repeat Simple_repeat 4 27 0 3 1479 591 237 76 8 chr3 117257996 117258247 -42341536 + L1MA8 LINE L1 6000 6267 -24 3 1479 346 299 0 11 chr3 117258271 117258359 -42341424 + B3A SINE B2 2 88 -110 3 1479 362 280 107 86 chr3 117258432 117258666 -42341117 - MLT1C LTR MaLR -189 278 40 3 1479 295 320 69 57 chr3 117259070 117259229 -42340554 - MIRb SINE MIR -50 218 58 3 1479 230 277 36 0 chr3 117259234 117259317 -42340466 - L1MC5 LINE L1 -910 7051 6966 3 1479 107 53 0 0 chr3 117259455 117259625 -42340158 + AT_rich Low_complexity Low_complexity 1 170 0 3 1479 263 135 40 30 chr3 117259631 117259730 -42340053 + (TA)n Simple_repeat Simple_repeat 1 100 0 3 1479 45 83 0 0 chr3 117259730 117259838 -42339945 + AT_rich Low_complexity Low_complexity 1 108 0 3 1479 419 311 164 22 chr3 117259893 117260301 -42339482 + Lx8 LINE L1 6991 7468 -5 3 1479 1481 207 14 36 chr3 117260301 117260666 -42339117 + RCHARR1 DNA MER1_type 516 872 -102 3 1479 1726 311 80 55 chr3 117261585 117262411 -42337372 + Lx8 LINE L1 6624 7470 -3 3 1479 21 36 0 0 chr3 117264200 117264228 -42335555 + AT_rich Low_complexity Low_complexity 1 28 0 3 1479 393 22 0 0 chr3 117264239 117264285 -42335498 + (TTA)n Simple_repeat Simple_repeat 2 47 0 3 1479 3220 168 76 8 chr3 117264781 117265424 -42334359 + RMER6C LTR ERVK 4 690 0 3 1479 1136 52 0 0 chr3 117265883 117266019 -42333764 - B1_Mus2 SINE Alu -10 137 2 3 1479 262 156 31 0 chr3 117266066 117266130 -42333653 + CT-rich Low_complexity Low_complexity 3 68 0 3 1479 512 311 0 0 chr3 117266130 117266262 -42333521 - B1F SINE Alu 0 149 18 3 1479 629 373 64 20 chr3 117268037 117268535 -42331248 - Lx7 LINE L1 0 7473 6945 3 1479 273 118 0 0 chr3 117270243 117270294 -42329489 + (TA)n Simple_repeat Simple_repeat 2 52 0 4 1479 693 36 0 0 chr3 117270302 117270386 -42329397 + (TAGA)n Simple_repeat Simple_repeat 2 85 0 4 1479 362 323 15 0 chr3 117270656 117270789 -42328994 + MLT1B LTR MaLR 234 368 -22 4 1479 639 265 168 31 chr3 117271891 117272117 -42327666 + B4A SINE B4 1 257 -35 4 1479 416 104 15 0 chr3 117272123 117272190 -42327593 + (CA)n Simple_repeat Simple_repeat 1 68 0 4 1479 265 193 59 0 chr3 117272854 117272989 -42326794 + (TG)n Simple_repeat Simple_repeat 2 144 0 4 1479 252 0 0 0 chr3 117273064 117273092 -42326691 + (TG)n Simple_repeat Simple_repeat 1 28 0 4 1479 393 314 5 90 chr3 117273123 117273312 -42326471 - B4 SINE B4 -118 174 2 4 1479 329 207 12 0 chr3 117273468 117273550 -42326233 + CT-rich Low_complexity Low_complexity 1 83 0 4 1479 231 308 47 0 chr3 117274791 117274898 -42324885 - MIRb SINE MIR -75 193 82 4 1479 180 176 0 0 chr3 117275508 117275542 -42324241 + (TTTA)n Simple_repeat Simple_repeat 1 34 0 4 1479 776 235 114 24 chr3 117275544 117275791 -42323992 - Lx4B LINE L1 -74 6984 6727 4 1479 2565 123 27 12 chr3 117275822 117276234 -42323549 - Lx3B LINE L1 -48 6925 6508 4 1479 236 182 12 38 chr3 117278452 117278532 -42321251 + (CCG)n Simple_repeat Simple_repeat 1 78 0 4 1479 204 246 31 0 chr3 117279551 117279616 -42320167 + CT-rich Low_complexity Low_complexity 2 68 0 4 1479 435 38 0 0 chr3 117279617 117279670 -42320113 + (TG)n Simple_repeat Simple_repeat 1 53 0 4 1479 357 189 0 0 chr3 117279672 117279762 -42320021 + GA-rich Low_complexity Low_complexity 1 90 0 4 1479 290 0 75 0 chr3 117279869 117279909 -42319874 + (TTTTG)n Simple_repeat Simple_repeat 3 45 0 4 1479 21 36 0 0 chr3 117280564 117280592 -42319191 + AT_rich Low_complexity Low_complexity 1 28 0 4 1479 1108 215 5 9 chr3 117281505 117281721 -42318062 - B3 SINE B2 0 216 2 4 1479 235 173 19 0 chr3 117281904 117281956 -42317827 + (TA)n Simple_repeat Simple_repeat 2 54 0 4 1479 453 235 70 42 chr3 117282744 117282886 -42316897 + B1F SINE Alu 3 148 -1 4 1479 281 206 5 48 chr3 117283093 117283160 -42316623 - ID4 SINE ID -83 69 2 4 1479 207 0 0 0 chr3 117283529 117283552 -42316231 + (TTCC)n Simple_repeat Simple_repeat 1 23 0 4 1479 914 126 29 6 chr3 117283552 117283727 -42316056 + CT-rich Low_complexity Low_complexity 2 180 0 4 1479 3218 82 2 5 chr3 117283756 117284198 -42315585 - L1_Mus4 LINE L1 -12 6624 6184 4 1479 492 284 37 0 chr3 117284826 117284960 -42314823 + B1_Mur1 SINE Alu 1 139 -10 4 1479 220 368 86 11 chr3 117285060 117285247 -42314536 + MIR SINE MIR 23 223 -39 4 1479 221 0 0 33 chr3 117286841 117286871 -42312912 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 4 1479 186 308 30 15 chr3 117287018 117287084 -42312699 + MIRc SINE MIR 111 177 -91 4 1479 189 74 0 0 chr3 117287964 117287991 -42311792 + (TG)n Simple_repeat Simple_repeat 1 27 0 4 1479 253 244 135 56 chr3 117288332 117288458 -42311325 - LTR82A LTR ERVL -126 746 611 4 1479 307 235 111 56 chr3 117288659 117288821 -42310962 - LTR82A LTR ERVL -520 352 182 4 1479 299 262 37 22 chr3 117288848 117288956 -42310827 - MTEa LTR MaLR 0 379 268 4 1479 292 56 56 0 chr3 117290427 117290481 -42309302 + (TTTTG)n Simple_repeat Simple_repeat 5 61 0 4 1479 230 259 0 18 chr3 117290492 117290547 -42309236 - MIR SINE MIR -84 124 71 4 1479 515 359 7 49 chr3 117290967 117291254 -42308529 + B4 SINE B4 2 276 -16 4 1479 402 13 66 13 chr3 117291275 117291351 -42308432 + (CA)n Simple_repeat Simple_repeat 2 81 0 4 1479 7682 38 0 1 chr3 117291699 117293160 -42306623 - L1Md_T LINE L1 -2 6580 5146 4 1479 993 296 203 6 chr3 117294495 117294992 -42304791 - Lx8 LINE L1 -9 7464 6870 4 1479 944 123 7 0 chr3 117295553 117295708 -42304075 + (CA)n Simple_repeat Simple_repeat 1 156 0 4 1479 981 277 26 22 chr3 117295840 117296113 -42303670 - B4A SINE B4 -18 274 1 4 1479 279 133 0 0 chr3 117297272 117297317 -42302466 + (TA)n Simple_repeat Simple_repeat 1 45 0 4 1479 9394 61 1 9 chr3 117298405 117299704 -42300079 - L1_Mm LINE L1 -414 5469 4181 4 1479 1080 79 102 6 chr3 117299704 117299870 -42299913 + L1Md_F2 LINE L1 6389 6570 -12 4 1479 346 283 0 96 chr3 117299927 117300052 -42299731 + BC1_Mm scRNA scRNA 2 114 -38 4 1479 629 274 45 17 chr3 117300422 117300600 -42299183 - B3A SINE B2 -15 183 1 4 1479 25 0 0 0 chr3 117300940 117300965 -42298818 + GC_rich Low_complexity Low_complexity 1 25 0 4 1479 191 304 42 59 chr3 117301089 117301208 -42298575 + MIR SINE MIR 17 133 -129 4 1479 3008 49 0 3 chr3 117301847 117302217 -42297566 + L1Md_F2 LINE L1 6213 6581 -1 4 1479 341 307 7 35 chr3 117302637 117302779 -42297004 + CT-rich Low_complexity Low_complexity 4 141 0 4 1479 312 213 66 13 chr3 117303073 117303149 -42296634 - HAL1-3A_ME LINE L1 -804 2054 1975 4 1479 537 92 0 0 chr3 117303169 117303245 -42296538 + (TATG)n Simple_repeat Simple_repeat 3 78 0 4 1479 289 197 129 21 chr3 117304171 117304311 -42295472 - Charlie5 DNA MER1_type -43 2581 2427 4 1479 219 36 0 0 chr3 117304612 117304640 -42295143 + (TG)n Simple_repeat Simple_repeat 2 29 0 4 1479 972 191 74 15 chr3 117307523 117307725 -42292058 - URR1B DNA MER1_type -11 214 1 4 1479 28 48 0 0 chr3 117308169 117308211 -42291572 + AT_rich Low_complexity Low_complexity 1 42 0 4 1479 299 386 102 36 chr3 117308252 117308644 -42291139 - MLT1L LTR MaLR 0 610 193 4 1479 21 0 0 0 chr3 117308839 117308860 -42290923 + AT_rich Low_complexity Low_complexity 1 21 0 4 1480 496 271 34 25 chr3 117310114 117310318 -42289465 - Lx9 LINE L1 -155 7489 7284 4 1480 987 197 50 48 chr3 117310365 117310725 -42289058 - RMER10A LTR ERVL -14 428 1 4 1480 264 299 210 19 chr3 117311138 117311295 -42288488 + MIR SINE MIR 33 219 -43 4 1480 358 257 35 0 chr3 117311356 117311500 -42288283 + (TA)n Simple_repeat Simple_repeat 2 150 0 4 1480 567 0 0 0 chr3 117312385 117312448 -42287335 + (TA)n Simple_repeat Simple_repeat 2 64 0 4 1480 2432 41 0 0 chr3 117312667 117312960 -42286823 - L1Md_A LINE L1 0 6582 6290 4 1480 603 297 35 5 chr3 117312975 117313178 -42286605 + ID_B1 SINE B4 3 211 -13 4 1480 556 269 33 7 chr3 117313187 117313337 -42286446 - B4A SINE B4 -138 154 1 4 1480 413 324 162 0 chr3 117313584 117313732 -42286051 + B4 SINE B4 98 269 -23 4 1480 317 24 24 0 chr3 117313732 117313774 -42286009 + (CA)n Simple_repeat Simple_repeat 2 44 0 4 1480 660 36 0 0 chr3 117314047 117314130 -42285653 + (CTG)n Simple_repeat Simple_repeat 2 84 0 4 1480 1174 218 19 31 chr3 117314664 117314924 -42284859 - ORR1B2 LTR MaLR -1 366 110 4 1480 303 240 142 112 chr3 117314961 117315130 -42284653 - MER113 DNA MER1_type -119 402 229 4 1480 192 352 144 22 chr3 117317922 117318179 -42281604 - L2b LINE L2 -1 3374 3112 4 1480 275 171 26 60 chr3 117318699 117318792 -42280991 + L1MA7 LINE L1 6094 6185 -106 4 1480 243 0 0 0 chr3 117319495 117319522 -42280261 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 4 1480 1095 80 0 0 chr3 117319522 117319659 -42280124 - B1_Mm SINE Alu -9 138 2 4 1480 1222 155 186 111 chr3 117319871 117320204 -42279579 - RMER6C LTR ERVK -332 358 1 4 1480 574 358 52 0 chr3 117320523 117320696 -42279087 - B3A SINE B2 -16 182 1 4 1480 1046 136 90 0 chr3 117321115 117321271 -42278512 + B2_Mm2 SINE B2 2 173 -22 4 1480 522 0 0 0 chr3 117321271 117321329 -42278454 + (TATATG)n Simple_repeat Simple_repeat 2 59 0 4 1480 1046 136 90 0 chr3 117321329 117321349 -42278434 + B2_Mm2 SINE B2 174 193 -2 4 1480 22 0 0 0 chr3 117322621 117322643 -42277140 + AT_rich Low_complexity Low_complexity 1 22 0 4 1480 683 222 82 60 chr3 117322645 117322668 -42277115 - B3A SINE B2 -11 187 166 4 1480 630 0 0 0 chr3 117322668 117322738 -42277045 + (GA)n Simple_repeat Simple_repeat 1 70 0 4 1480 683 222 82 60 chr3 117322738 117322896 -42276887 - B3A SINE B2 -33 165 2 4 1480 4123 68 0 4 chr3 117323175 117323704 -42276079 - L1_Mus2 LINE L1 -1 6565 6039 4 1480 1278 119 0 1 chr3 117324772 117325649 -42274134 + (CA)n Simple_repeat Simple_repeat 1 876 0 4 1480 1557 20 0 34 chr3 117325922 117326126 -42273657 - L1Md_F2 LINE L1 0 6582 6386 4 1480 907 92 0 50 chr3 117326888 117327049 -42272734 - L1Md_F2 LINE L1 0 6582 6430 4 1480 570 273 23 51 chr3 117327239 117327455 -42272328 + B3 SINE B2 1 210 -6 4 1480 1181 43 0 0 chr3 117328846 117328987 -42270796 - B1_Mus1 SINE Alu -7 141 1 4 1480 3486 8 0 0 chr3 117329254 117329655 -42270128 - MERVL-int LTR ERVL -1782 3703 3303 4 1480 298 367 73 0 chr3 117330440 117330549 -42269234 - B1F SINE Alu -2 147 31 4 1480 25 0 0 0 chr3 117331356 117331381 -42268402 + AT_rich Low_complexity Low_complexity 1 25 0 4 1480 225 233 0 0 chr3 117331384 117331427 -42268356 - L2b LINE L2 -9 3366 3324 4 1480 1087 216 0 36 chr3 117332771 117332992 -42266791 + B3 SINE B2 1 213 -3 4 1480 433 299 89 47 chr3 117334393 117334607 -42265176 - Charlie19a DNA Charlie -161 225 3 4 1480 795 163 56 21 chr3 117334797 117334941 -42264842 - B1_Mur4 SINE Alu -1 149 1 4 1480 270 0 0 0 chr3 117335299 117335329 -42264454 + (CAAA)n Simple_repeat Simple_repeat 3 32 0 4 1480 212 244 0 0 chr3 117336676 117336717 -42263066 + polypyrimidine Low_complexity Low_complexity 1 41 0 4 1480 759 69 0 0 chr3 117336734 117336836 -42262947 + (TC)n Simple_repeat Simple_repeat 1 102 0 4 1480 247 302 63 8 chr3 117337456 117337583 -42262200 + L2 LINE L2 2530 2663 -756 4 1480 244 311 56 0 chr3 117337872 117337962 -42261821 - MLT1A LTR MaLR -247 127 33 4 1480 474 310 70 43 chr3 117338133 117338389 -42261394 + MLT1A LTR MaLR 112 374 0 5 1480 5448 2 0 0 chr3 117339099 117339696 -42260087 - L1Md_A LINE L1 0 6582 5986 5 1480 291 257 99 16 chr3 117339799 117339957 -42259826 - MER97a DNA MER1_type? -2 892 721 5 1480 451 301 143 8 chr3 117339957 117340202 -42259581 + B4A SINE B4 2 279 -13 5 1480 201 288 0 0 chr3 117340205 117340271 -42259512 + (CA)n Simple_repeat Simple_repeat 1 66 0 5 1480 864 322 91 28 chr3 117340302 117340841 -42258942 - MER97a DNA MER1_type? -326 764 192 5 1480 326 321 116 27 chr3 117340851 117341075 -42258708 - MLT1G LTR MaLR -9 582 339 5 1480 497 298 32 0 chr3 117341193 117341317 -42258466 - B4A SINE B4 -164 128 1 5 1480 791 224 7 0 chr3 117341475 117341622 -42258161 + B1_Mur2 SINE Alu 1 148 -1 5 1480 384 255 10 10 chr3 117341646 117341749 -42258034 - MER97a DNA MER1_type? -703 191 89 5 1480 714 329 80 26 chr3 117342758 117343145 -42256638 + MTC LTR MaLR 8 415 -6 5 1480 283 270 26 19 chr3 117343151 117343285 -42256498 - MIRc SINE MIR -126 142 4 5 1480 287 145 14 0 chr3 117343513 117343582 -42256201 + (CA)n Simple_repeat Simple_repeat 1 70 0 5 1480 770 52 0 0 chr3 117343649 117343746 -42256037 - B1_Mus2 SINE Alu -1 146 50 5 1480 282 138 82 49 chr3 117343692 117343753 -42256030 - RLTR25A LTR ERVK -521 582 520 5 1480 1692 33 14 9 chr3 117343923 117344138 -42255645 - L1Md_F2 LINE L1 -4 6578 6363 5 1480 488 62 0 0 chr3 117344405 117344469 -42255314 - B1_Mus1 SINE Alu -83 65 2 5 1480 365 194 0 27 chr3 117344409 117344483 -42255300 - ID_B1 SINE B4 -83 141 70 5 1480 273 303 50 25 chr3 117345599 117345758 -42254025 + RSINE1 SINE B4 3 165 0 5 1480 313 294 43 44 chr3 117346092 117346224 -42253559 - MLT1D LTR MaLR -363 142 10 5 1480 260 279 23 11 chr3 117346995 117347082 -42252701 + CT-rich Low_complexity Low_complexity 5 92 0 5 1480 482 0 17 0 chr3 117347236 117347294 -42252489 + (TCTA)n Simple_repeat Simple_repeat 3 61 0 5 1480 624 62 0 0 chr3 117347496 117347577 -42252206 + (GGAGA)n Simple_repeat Simple_repeat 1 81 0 5 1480 303 349 15 0 chr3 117347582 117347714 -42252069 + GA-rich Low_complexity Low_complexity 3 136 0 5 1480 221 94 0 0 chr3 117348541 117348573 -42251210 + ID4 SINE ID 3 34 -49 5 1480 264 264 57 0 chr3 117348681 117348840 -42250943 + (TA)n Simple_repeat Simple_repeat 2 169 0 5 1480 257 374 10 0 chr3 117349313 117349412 -42250371 + MIR SINE MIR 18 117 -145 5 1480 819 256 65 9 chr3 117350055 117350284 -42249499 - MTEa LTR MaLR -12 367 126 5 1480 840 234 42 0 chr3 117350730 117350949 -42248834 + B4A SINE B4 1 289 -3 5 1480 470 246 46 1 chr3 117352017 117352121 -42247662 - RSINE1 SINE B4 -176 116 7 5 1480 583 246 137 77 chr3 117352800 117352829 -42246954 - Charlie5 DNA MER1_type -1 2623 2596 5 1480 654 286 80 25 chr3 117352829 117353105 -42246678 + B4A SINE B4 2 292 0 5 1480 583 246 137 77 chr3 117353105 117353251 -42246532 - Charlie5 DNA MER1_type -29 2595 2451 5 1480 2542 168 105 21 chr3 117353251 117353335 -42246448 + RLTR31_Mm LTR ERVK 1 87 -474 5 1480 564 15 0 0 chr3 117353335 117353400 -42246383 + (GA)n Simple_repeat Simple_repeat 2 66 0 5 1480 2542 168 105 21 chr3 117353400 117353831 -42245952 + RLTR31_Mm LTR ERVK 88 558 -3 5 1480 583 246 137 77 chr3 117353831 117354019 -42245764 - Charlie5 DNA MER1_type -174 2450 2237 5 1480 1627 169 128 6 chr3 117355137 117355464 -42244319 + ORR1B2 LTR MaLR 1 367 0 5 1480 1224 217 8 27 chr3 117355782 117356042 -42243741 - RLTR16 LTR ERVK -1 504 250 5 1480 1002 260 141 21 chr3 117357486 117357812 -42241971 + ORR1D2 LTR MaLR 4 368 -2 5 1480 1697 214 35 22 chr3 117358887 117358994 -42240789 - ORR1D1 LTR MaLR 0 374 269 5 1480 3520 165 118 61 chr3 117358994 117359850 -42239933 - RMER17A2 LTR ERVK -1 905 1 5 1480 1697 214 35 22 chr3 117359850 117360109 -42239674 - ORR1D1 LTR MaLR -106 268 3 5 1480 223 319 195 0 chr3 117360763 117360876 -42238907 - L2a LINE L2 -1 3425 3291 5 1480 369 0 0 0 chr3 117360927 117360968 -42238815 + (TC)n Simple_repeat Simple_repeat 1 41 0 5 1480 210 176 0 0 chr3 117361318 117361352 -42238431 + MIRm SINE MIR 222 255 -21 5 1480 196 167 0 53 chr3 117361320 117361358 -42238425 + L2b LINE L2 3323 3358 -17 5 1480 1874 47 37 55 chr3 117362141 117362412 -42237371 - L1Md_F3 LINE L1 -15 6569 6304 5 1480 2287 32 0 0 chr3 117362413 117362694 -42237089 + L1Md_T LINE L1 6043 6323 -259 5 1480 1070 78 0 21 chr3 117364445 117364590 -42235193 - B1_Mus2 SINE Alu -5 142 1 5 1480 387 287 110 14 chr3 117364860 117365005 -42234778 + B3A SINE B2 2 160 -38 5 1480 333 261 45 0 chr3 117365101 117365189 -42234594 + B1F1 SINE Alu 3 94 -55 5 1480 321 26 0 0 chr3 117365808 117365846 -42233937 + (TG)n Simple_repeat Simple_repeat 1 38 0 5 1480 767 206 13 0 chr3 117365972 117366127 -42233656 + URR1A DNA MER1_type 69 225 -1 5 1480 1237 113 11 0 chr3 117366977 117367163 -42232620 + B2_Mm1t SINE B2 1 188 -5 5 1480 180 0 0 0 chr3 117367170 117367190 -42232593 + (TAA)n Simple_repeat Simple_repeat 2 21 0 5 1480 453 251 62 57 chr3 117367305 117367482 -42232301 - MER57C2 LTR ERV1 -256 178 1 5 1480 615 14 0 0 chr3 117369731 117369803 -42229980 + (TG)n Simple_repeat Simple_repeat 2 73 0 5 1480 226 247 13 64 chr3 117370386 117370464 -42229319 - ORR1D-int LTR MaLR -1086 284 211 5 1480 189 371 67 0 chr3 117370586 117370675 -42229108 - MIRb SINE MIR -79 189 95 5 1480 1083 96 0 7 chr3 117370734 117370881 -42228902 + B1_Mus2 SINE Alu 2 147 0 5 1480 406 301 173 34 chr3 117371450 117371687 -42228096 + B4A SINE B4 20 289 -3 5 1480 303 28 0 0 chr3 117371703 117371739 -42228044 + (CA)n Simple_repeat Simple_repeat 1 36 0 5 1480 23 0 0 0 chr3 117371801 117371824 -42227959 + AT_rich Low_complexity Low_complexity 1 23 0 5 1480 286 383 39 8 chr3 117372063 117372192 -42227591 + MER58A DNA MER1_type 16 148 -76 5 1480 206 237 0 0 chr3 117372490 117372528 -42227255 + (TG)n Simple_repeat Simple_repeat 1 38 0 5 1480 234 389 19 63 chr3 117372619 117372825 -42226958 + MER58A DNA MER1_type 13 209 -15 5 1480 556 207 7 17 chr3 117372982 117373281 -42226502 + (TG)n Simple_repeat Simple_repeat 1 295 0 5 1480 1016 229 9 0 chr3 117373563 117373777 -42226006 + B3 SINE B2 1 216 0 5 1480 22 35 0 0 chr3 117374310 117374339 -42225444 + AT_rich Low_complexity Low_complexity 1 29 0 5 1480 434 33 17 0 chr3 117376065 117376125 -42223658 + (TG)n Simple_repeat Simple_repeat 1 61 0 5 1480 333 0 0 0 chr3 117376125 117376161 -42223622 + (GA)n Simple_repeat Simple_repeat 1 37 0 5 1480 1073 274 24 48 chr3 117376916 117377253 -42222530 - MTEb LTR MaLR 0 379 51 5 1480 752 94 50 0 chr3 117377305 117377464 -42222319 + (CAGAGA)n Simple_repeat Simple_repeat 2 168 0 5 1480 260 222 16 16 chr3 117377580 117377644 -42222139 + CT-rich Low_complexity Low_complexity 2 65 0 5 1480 507 354 24 24 chr3 117378521 117378686 -42221097 + B3 SINE B2 40 204 -12 5 1480 303 304 207 22 chr3 117379139 117379371 -42220412 + B4A SINE B4 2 276 -16 5 1480 497 16 16 0 chr3 117379428 117379490 -42220293 + (TC)n Simple_repeat Simple_repeat 1 63 0 5 1480 650 13 13 0 chr3 117379490 117379568 -42220215 + (CA)n Simple_repeat Simple_repeat 1 80 0 5 1480 297 282 65 115 chr3 117379778 117379978 -42219805 + B3A SINE B2 5 194 -4 5 1480 429 20 0 0 chr3 117380726 117380776 -42219007 + (CATA)n Simple_repeat Simple_repeat 1 50 0 5 1480 634 117 0 18 chr3 117380884 117380997 -42218786 + (TTTC)n Simple_repeat Simple_repeat 2 112 0 5 1480 526 150 30 0 chr3 117381456 117381623 -42218160 + (TAGA)n Simple_repeat Simple_repeat 2 173 0 5 1480 206 310 0 0 chr3 117381634 117381692 -42218091 + (TATATG)n Simple_repeat Simple_repeat 3 60 0 5 1480 566 203 8 0 chr3 117381694 117381827 -42217956 + (CATATA)n Simple_repeat Simple_repeat 3 136 0 5 1480 398 36 18 0 chr3 117381852 117381908 -42217875 + (TAGA)n Simple_repeat Simple_repeat 1 57 0 5 1480 195 69 0 0 chr3 117382876 117382905 -42216878 + (TCTCTG)n Simple_repeat Simple_repeat 6 34 0 5 1480 352 268 52 35 chr3 117382980 117383096 -42216687 - B4A SINE B4 -6 286 169 5 1480 518 158 16 78 chr3 117383123 117383315 -42216468 - RMER17C LTR ERVK -136 274 95 5 1480 296 347 0 10 chr3 117383317 117383413 -42216370 - B4A SINE B4 -197 95 1 5 1480 290 352 94 53 chr3 117383432 117383461 -42216322 + B4A SINE B4 62 168 -124 5 1480 335 302 32 72 chr3 117383461 117383586 -42216197 + PB1 SINE Alu 7 126 -1 5 1480 290 352 94 53 chr3 117383586 117383603 -42216180 + B4A SINE B4 169 239 -53 5 1480 950 291 18 7 chr3 117384490 117384767 -42215016 - B4 SINE B4 -12 280 1 5 1480 403 308 150 35 chr3 117384784 117385184 -42214599 - L1ME1 LINE L1 -72 6107 5662 5 1480 271 307 0 0 chr3 117386600 117386675 -42213108 - MER46C DNA MER2_type -1 337 263 5 1480 369 238 69 35 chr3 117388224 117388311 -42211472 + B3A SINE B2 2 91 -107 5 1480 273 203 0 0 chr3 117388782 117388796 -42210987 + A-rich Low_complexity Low_complexity 1 14 0 5 1480 1149 75 0 0 chr3 117388796 117388943 -42210840 + B1_Mm SINE Alu 1 147 0 5 1480 273 203 0 0 chr3 117388943 117388992 -42210791 + A-rich Low_complexity Low_complexity 15 63 0 5 1480 286 269 66 19 chr3 117389714 117389820 -42209963 + L2b LINE L2 3245 3355 -20 5 1480 298 345 104 44 chr3 117390506 117390755 -42209028 - MIRb SINE MIR 0 268 5 5 1480 237 311 47 37 chr3 117390899 117391006 -42208777 + MamRep4096 DNA hAT? 279 386 -40 5 1480 394 169 14 0 chr3 117391906 117391977 -42207806 + ID4 SINE ID 3 74 -9 5 1480 33 43 0 0 chr3 117392366 117392413 -42207370 + AT_rich Low_complexity Low_complexity 1 47 0 5 1480 233 311 33 0 chr3 117393958 117394019 -42205764 - MTE2a LTR MaLR -119 240 178 5 1480 1014 122 0 7 chr3 117394022 117394171 -42205612 + B1_Mus1 SINE Alu 1 148 0 5 1480 3752 87 8 0 chr3 117394174 117394679 -42205104 + L1_Mus1 LINE L1 6058 6566 -1 5 1480 213 139 0 0 chr3 117394682 117394725 -42205058 + (A)n Simple_repeat Simple_repeat 1 43 0 5 1480 354 45 0 0 chr3 117394847 117394891 -42204892 + (TA)n Simple_repeat Simple_repeat 2 45 0 6 1480 279 346 12 0 chr3 117394891 117394972 -42204811 - MTE2a LTR MaLR -231 148 67 5 1480 742 205 8 196 chr3 117394970 117395225 -42204558 + ORR1D-int LTR MaLR 366 572 -798 6 1480 307 197 0 16 chr3 117395223 117395285 -42204498 - MTE2a LTR MaLR -318 61 1 5 1480 242 282 154 0 chr3 117395285 117395356 -42204427 + Tigger6b DNA MER2_type 203 285 -1312 6 1480 273 365 8 60 chr3 117395459 117395593 -42204190 + Tigger6b DNA MER2_type 986 1112 -485 6 1480 348 340 52 9 chr3 117395596 117395807 -42203976 + ID_B1 SINE B4 3 222 -2 6 1480 1047 107 6 6 chr3 117395809 117395969 -42203814 + B2_Mm2 SINE B2 2 161 -34 6 1480 270 0 0 0 chr3 117395970 117396000 -42203783 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 6 1480 355 318 56 25 chr3 117396005 117396202 -42203581 + Tigger6b DNA MER2_type 1110 1312 -285 6 1480 425 332 151 11 chr3 117396250 117396436 -42203347 + B4A SINE B4 2 213 -79 6 1480 305 295 89 39 chr3 117396668 117396848 -42202935 - MLT1A1 LTR MaLR -219 189 1 6 1480 207 225 0 0 chr3 117396964 117397004 -42202779 + T-rich Low_complexity Low_complexity 1 40 0 6 1480 363 167 298 0 chr3 117397011 117397095 -42202688 - PB1D9 SINE Alu -9 111 3 6 1480 492 111 0 0 chr3 117397252 117397333 -42202450 + (TAGA)n Simple_repeat Simple_repeat 1 81 0 6 1480 22 35 0 0 chr3 117397989 117398018 -42201765 + AT_rich Low_complexity Low_complexity 1 29 0 6 1480 3624 165 49 18 chr3 117398885 117399556 -42200227 - RLTR17 LTR ERVK 0 692 1 6 1480 1038 272 49 35 chr3 117400270 117400659 -42199124 - MTE2a LTR MaLR -21 398 13 6 1480 1232 281 37 19 chr3 117401105 117401511 -42198272 - MTE2b LTR MaLR -15 404 1 6 1480 26 50 0 0 chr3 117401761 117401801 -42197982 + AT_rich Low_complexity Low_complexity 1 40 0 6 1480 1219 244 28 28 chr3 117401953 117402305 -42197478 - MTC LTR MaLR 0 421 27 6 1480 442 70 14 14 chr3 117402305 117402377 -42197406 + (TA)n Simple_repeat Simple_repeat 2 73 0 6 1480 636 320 68 79 chr3 117402383 117402736 -42197047 + MLT1C LTR MaLR 1 349 -118 6 1480 224 259 17 0 chr3 117402792 117402850 -42196933 - AluG_3 SINE Alu -91 220 162 6 1480 231 273 130 0 chr3 117402900 117402977 -42196806 + MLT1C LTR MaLR 381 467 0 6 1480 305 386 83 33 chr3 117403123 117403399 -42196384 - MLT1I LTR MaLR -48 363 74 6 1480 300 314 80 55 chr3 117403484 117403683 -42196100 - L2a LINE L2 -6 3420 3217 6 1480 533 313 103 6 chr3 117403938 117404288 -42195495 + L1ME4a LINE L1 5571 5954 -170 6 1480 2491 270 85 38 chr3 117404807 117405751 -42194032 - RMER1C Other Other -1 1341 31 6 1480 2726 146 13 30 chr3 117405764 117406231 -42193552 - RMER1B Other Other -2 1064 606 6 1480 312 313 62 68 chr3 117406441 117406633 -42193150 + L1MC3 LINE L1 6619 6809 -976 6 1480 237 324 37 37 chr3 117406955 117407064 -42192719 - MER34A LTR ERV1 -392 179 71 6 1480 359 335 27 0 chr3 117407087 117407308 -42192475 + L1MC3 LINE L1 6872 7098 -687 6 1480 249 187 14 21 chr3 117408093 117408243 -42191540 + (TA)n Simple_repeat Simple_repeat 1 148 0 6 1480 279 0 0 0 chr3 117408243 117408274 -42191509 + (TAGA)n Simple_repeat Simple_repeat 4 34 0 6 1480 1028 312 56 36 chr3 117408494 117409083 -42190700 + L1MC3 LINE L1 7119 7719 -66 6 1480 234 274 0 0 chr3 117409100 117409151 -42190632 + (TATATG)n Simple_repeat Simple_repeat 3 53 0 6 1480 332 340 60 0 chr3 117409151 117409251 -42190532 - PB1D10 SINE Alu -9 108 3 6 1480 21 0 0 0 chr3 117409266 117409287 -42190496 + AT_rich Low_complexity Low_complexity 1 21 0 6 1480 24 0 0 0 chr3 117409473 117409497 -42190286 + AT_rich Low_complexity Low_complexity 1 24 0 6 1480 981 288 100 23 chr3 117409533 117409858 -42189925 - Lx8 LINE L1 -110 7363 7013 6 1480 3724 38 2 0 chr3 117409858 117410308 -42189475 + L1Md_F2 LINE L1 6120 6570 -12 6 1480 981 288 100 23 chr3 117410308 117410373 -42189410 - Lx8 LINE L1 -461 7012 6945 6 1480 1586 255 99 8 chr3 117410958 117411444 -42188339 + MT2A LTR ERVL 4 533 0 6 1480 440 146 35 0 chr3 117411502 117411601 -42188182 + ORR1A2 LTR MaLR 1 102 -244 6 1480 21 0 0 0 chr3 117413507 117413528 -42186255 + AT_rich Low_complexity Low_complexity 1 21 0 6 1480 1543 236 41 31 chr3 117414983 117415399 -42184384 - MTC LTR MaLR -1 420 1 6 1480 663 289 55 93 chr3 117415836 117416766 -42183017 + L1ME1 LINE L1 5165 6044 -135 6 1480 435 19 0 0 chr3 117416928 117416980 -42182803 + (CA)n Simple_repeat Simple_repeat 2 53 0 6 1480 24 53 0 0 chr3 117417556 117417594 -42182189 + AT_rich Low_complexity Low_complexity 1 38 0 6 1480 2721 163 264 86 chr3 117417624 117418390 -42181393 - RMER19B LTR ERVK 0 902 1 6 1480 243 0 0 0 chr3 117418407 117418434 -42181349 + (T)n Simple_repeat Simple_repeat 1 27 0 6 1480 450 343 224 37 chr3 117418437 117419876 -42179907 - L2 LINE L2 -1250 2169 462 6 1480 548 137 10 0 chr3 117420131 117420233 -42179550 + (TCCCC)n Simple_repeat Simple_repeat 4 106 0 6 1480 716 333 158 33 chr3 117420474 117420931 -42178852 + MT2A LTR ERVL 17 530 -3 6 1480 250 289 26 0 chr3 117421436 117421512 -42178271 - MIRc SINE MIR -39 229 152 6 1480 257 319 0 78 chr3 117422469 117422571 -42177212 - ORR1E LTR MaLR -174 185 92 6 1480 333 304 203 31 chr3 117423072 117423389 -42176394 + RMER5 LTR ERV1 148 519 -15 6 1480 8093 131 74 7 chr3 117424179 117425935 -42173848 - Lx4A LINE L1 0 7058 5198 6 1480 350 276 394 114 chr3 117427620 117427892 -42171891 + MTE2a LTR MaLR 2 349 -30 6 1480 300 311 103 11 chr3 117427916 117428101 -42171682 - L1M5 LINE L1 -1588 4558 4357 6 1480 445 92 13 0 chr3 117428402 117428478 -42171305 + Lx LINE L1 6572 6648 -6 6 1480 2898 148 59 17 chr3 117428493 117429034 -42170749 - RLTR22_Mur LTR ERVK -1266 582 19 6 1480 502 350 59 14 chr3 117429047 117429401 -42170382 - L1M5 LINE L1 -3304 2842 2473 6 1480 2160 77 46 61 chr3 117429427 117429773 -42170010 - L1Md_F2 LINE L1 -13 6569 6229 6 1480 369 397 54 0 chr3 117429819 117430043 -42169740 + L2a LINE L2 2551 2786 -633 6 1480 277 385 73 5 chr3 117430257 117430463 -42169320 + L2a LINE L2 3202 3421 -5 6 1480 414 0 0 0 chr3 117430862 117430908 -42168875 + (TC)n Simple_repeat Simple_repeat 1 46 0 6 1480 869 19 9 0 chr3 117430908 117431014 -42168769 + (CA)n Simple_repeat Simple_repeat 1 108 0 6 1480 1418 244 9 39 chr3 117431381 117431713 -42168070 - MTD LTR MaLR 0 419 98 6 1480 609 294 0 20 chr3 117431840 117431986 -42167797 + RSINE1 SINE B4 4 146 -19 6 1480 243 0 0 0 chr3 117432862 117432889 -42166894 + (TG)n Simple_repeat Simple_repeat 1 27 0 6 1480 423 0 0 0 chr3 117432889 117432935 -42166848 + (GA)n Simple_repeat Simple_repeat 1 47 0 6 1480 513 282 21 96 chr3 117433080 117433268 -42166515 - B3A SINE B2 0 198 25 6 1480 297 0 0 0 chr3 117433359 117433392 -42166391 + (TG)n Simple_repeat Simple_repeat 2 34 0 6 1480 660 319 0 0 chr3 117433399 117433581 -42166202 - B3A SINE B2 -15 183 2 6 1480 242 192 64 0 chr3 117435031 117435109 -42164674 + (TTAA)n Simple_repeat Simple_repeat 4 86 0 6 1480 242 250 29 0 chr3 117436110 117436178 -42163605 + L1MA5 LINE L1 6215 6284 -16 6 1480 793 148 22 6 chr3 117436558 117436878 -42162905 + (TG)n Simple_repeat Simple_repeat 1 325 0 6 1480 230 271 0 0 chr3 117436891 117436939 -42162844 - B1F SINE Alu -5 144 97 6 1480 510 266 92 21 chr3 117437552 117437694 -42162089 - B3A SINE B2 -46 152 1 6 1480 2107 250 88 86 chr3 117437992 117439347 -42160436 + RMER1B Other Other 2 1056 -10 6 1480 225 281 0 59 chr3 117439412 117439480 -42160303 + MLT1J1 LTR MaLR 49 112 -332 6 1480 635 92 9 0 chr3 117439520 117439629 -42160154 + (TC)n Simple_repeat Simple_repeat 1 110 0 6 1480 393 354 88 56 chr3 117440153 117440494 -42159289 + ORR1E LTR MaLR 3 354 -5 6 1481 600 84 0 0 chr3 117440533 117440616 -42159167 + (TC)n Simple_repeat Simple_repeat 2 84 0 6 1481 545 319 60 56 chr3 117440627 117440896 -42158887 - B4A SINE B4 -22 270 1 6 1481 326 125 0 0 chr3 117441373 117441421 -42158362 - ORR1B1 LTR MaLR 0 367 320 6 1481 1615 190 86 32 chr3 117441503 117441851 -42157932 - ORR1B1 LTR MaLR -27 367 1 6 1481 199 310 111 26 chr3 117441916 117442105 -42157678 - L2a LINE L2 0 3426 3222 6 1481 381 324 0 0 chr3 117442208 117442313 -42157470 + Lx7 LINE L1 7172 7276 -420 6 1481 326 58 39 0 chr3 117442335 117442387 -42157396 + (TTTTG)n Simple_repeat Simple_repeat 2 55 0 6 1481 240 35 0 0 chr3 117442405 117442434 -42157349 + (TG)n Simple_repeat Simple_repeat 2 30 0 6 1481 29 0 0 0 chr3 117442514 117442543 -42157240 + AT_rich Low_complexity Low_complexity 1 29 0 6 1481 316 338 74 27 chr3 117443524 117443673 -42156110 + HAL1-3A_ME LINE L1 2284 2439 -419 6 1481 180 184 79 0 chr3 117444323 117444361 -42155422 - MIRb SINE MIR -23 245 205 6 1481 233 75 0 24 chr3 117444744 117444785 -42154998 + (TTTG)n Simple_repeat Simple_repeat 1 40 0 6 1481 5204 76 7 9 chr3 117445026 117445718 -42154065 - L1_Mus2 LINE L1 0 6566 5876 6 1481 425 266 36 54 chr3 117446009 117446176 -42153607 + RNLTR23 LTR ERVK 479 642 0 6 1481 4586 74 0 0 chr3 117446176 117446794 -42152989 - L1_Mm LINE L1 -2 5881 5264 6 1481 534 16 0 0 chr3 117446802 117446865 -42152918 + (TA)n Simple_repeat Simple_repeat 1 63 0 6 1481 1010 92 0 54 chr3 117446999 117447148 -42152635 + B1_Mus1 SINE Alu 2 142 -6 6 1481 1539 17 0 0 chr3 117447167 117447345 -42152438 + (GGGAGA)n Simple_repeat Simple_repeat 3 180 0 6 1481 623 121 17 8 chr3 117447351 117447468 -42152315 + L1_Mus3 LINE L1 6518 6635 -3 6 1481 455 315 72 24 chr3 117447495 117447734 -42152049 + MLT1G1 LTR MaLR 146 394 -201 6 1481 460 346 125 51 chr3 117447929 117448896 -42150887 + MLT1G1-int LTR MaLR 82 1198 -291 6 1481 1495 84 0 9 chr3 117448896 117449112 -42150671 - Lx LINE L1 -2 6652 6439 6 1481 460 344 137 59 chr3 117449112 117449384 -42150399 + MLT1G1-int LTR MaLR 1199 1487 -2 6 1481 21 0 0 0 chr3 117450007 117450028 -42149755 + AT_rich Low_complexity Low_complexity 1 21 0 6 1481 532 188 8 8 chr3 117450996 117451125 -42148658 + CT-rich Low_complexity Low_complexity 1 129 0 6 1481 1042 188 48 78 chr3 117451769 117452000 -42147783 + URR1B DNA MER1_type 2 225 0 6 1481 215 190 16 49 chr3 117452148 117452209 -42147574 + T-rich Low_complexity Low_complexity 2 60 0 6 1481 1083 186 30 47 chr3 117452542 117452879 -42146904 - RLTR13B1 LTR ERVK 0 978 537 6 1481 212 358 71 50 chr3 117452947 117452997 -42146786 + ID_B1 SINE B4 79 127 -97 7 1481 1002 53 0 0 chr3 117452997 117453128 -42146655 + L1_Mus1 LINE L1 6437 6567 0 7 1481 212 358 71 50 chr3 117453128 117453218 -42146565 + ID_B1 SINE B4 128 222 -2 7 1481 314 91 18 0 chr3 117453346 117453401 -42146382 + (TG)n Simple_repeat Simple_repeat 2 57 0 7 1481 198 409 48 12 chr3 117453849 117454015 -42145768 - MIRm SINE MIR -103 173 2 7 1481 242 128 0 41 chr3 117454120 117454169 -42145614 + (CATA)n Simple_repeat Simple_repeat 2 48 0 7 1481 389 269 11 11 chr3 117454370 117454464 -42145319 + B4A SINE B4 7 100 -192 7 1481 198 0 0 0 chr3 117455725 117455747 -42144036 + (CA)n Simple_repeat Simple_repeat 1 22 0 7 1481 925 312 19 8 chr3 117455992 117456250 -42143533 + B4A SINE B4 9 269 -23 7 1481 1305 57 0 0 chr3 117456250 117456425 -42143358 + (CA)n Simple_repeat Simple_repeat 2 176 0 7 1481 336 48 0 0 chr3 117458812 117458854 -42140929 + (ATTG)n Simple_repeat Simple_repeat 2 43 0 7 1481 262 316 63 49 chr3 117459074 117459217 -42140566 - MER57A-int LTR ERV1 -1579 4608 4464 7 1481 294 347 57 28 chr3 117459379 117459850 -42139933 - MER57A-int LTR ERV1 -2100 4087 3603 7 1481 721 181 14 0 chr3 117460386 117460524 -42139259 + URR1B DNA MER1_type 86 225 0 7 1481 40 21 0 0 chr3 117460755 117460802 -42138981 + AT_rich Low_complexity Low_complexity 1 47 0 7 1481 258 319 0 27 chr3 117460929 117461003 -42138780 - B4A SINE B4 0 292 221 7 1481 209 227 23 0 chr3 117461003 117461047 -42138736 + (CAT)n Simple_repeat Simple_repeat 1 45 0 7 1481 479 361 37 37 chr3 117461077 117461238 -42138545 - B4A SINE B4 -102 190 30 7 1481 423 0 0 0 chr3 117461331 117461378 -42138405 + (TA)n Simple_repeat Simple_repeat 1 47 0 7 1481 333 0 0 0 chr3 117461378 117461414 -42138369 + (GA)n Simple_repeat Simple_repeat 2 38 0 7 1481 360 326 116 0 chr3 117462437 117462566 -42137217 - B1_Mus2 SINE Alu 0 147 4 7 1481 402 74 0 0 chr3 117463302 117463356 -42136427 + (TAAA)n Simple_repeat Simple_repeat 3 56 0 7 1481 837 99 0 0 chr3 117463539 117463660 -42136123 + (TAGA)n Simple_repeat Simple_repeat 4 124 0 7 1481 324 271 78 51 chr3 117463735 117463992 -42135791 + RMER10A LTR ERVL 160 423 -19 7 1481 252 290 52 31 chr3 117464455 117464551 -42135232 + MTD LTR MaLR 318 415 -4 7 1481 384 294 136 34 chr3 117465929 117466070 -42133713 + B3A SINE B2 4 163 -35 7 1481 1019 89 0 22 chr3 117466070 117466254 -42133529 + (CA)n Simple_repeat Simple_repeat 1 180 0 7 1481 384 294 136 34 chr3 117466254 117466288 -42133495 + B3A SINE B2 164 197 -1 7 1481 6604 87 48 15 chr3 117467255 117468212 -42131571 + Lx3_Mus LINE L1 5993 6989 -20 7 1481 234 0 0 0 chr3 117468212 117468238 -42131545 + (TTAA)n Simple_repeat Simple_repeat 1 26 0 7 1481 6604 87 48 15 chr3 117468238 117468264 -42131519 + Lx3_Mus LINE L1 6990 7008 -1 7 1481 550 302 29 7 chr3 117468814 117468954 -42130829 - RSINE1 SINE B4 -2 163 21 7 1481 1835 197 75 8 chr3 117468957 117469331 -42130452 - MTD LTR MaLR -14 405 7 7 1481 375 105 0 0 chr3 117469391 117469448 -42130335 + (TA)n Simple_repeat Simple_repeat 1 57 0 7 1481 492 18 0 0 chr3 117469448 117469504 -42130279 + (CA)n Simple_repeat Simple_repeat 2 58 0 7 1481 914 307 69 14 chr3 117469539 117469975 -42129808 - ERVL-B4-int LTR ERVL -362 5352 4893 7 1481 295 321 18 9 chr3 117470270 117470380 -42129403 + MLT1B LTR MaLR 203 313 -77 7 1481 2435 140 23 33 chr3 117470436 117470835 -42128948 + Lx3C LINE L1 6574 6968 -8 7 1481 23 54 0 0 chr3 117470835 117470872 -42128911 + AT_rich Low_complexity Low_complexity 1 37 0 7 1481 216 302 4 0 chr3 117470889 117470964 -42128819 - MIRb SINE MIR -137 131 53 7 1481 373 339 14 72 chr3 117471198 117471405 -42128378 - B3A SINE B2 -3 195 1 7 1481 440 18 0 17 chr3 117471473 117471531 -42128252 + (TC)n Simple_repeat Simple_repeat 2 58 0 7 1481 615 309 115 41 chr3 117471917 117472187 -42127596 - B4A SINE B4 0 292 3 7 1481 246 329 0 13 chr3 117472814 117472891 -42126892 - MER45R DNA Tip100 -1479 102 27 7 1481 903 229 64 0 chr3 117474185 117474208 -42125575 - B3 SINE B2 -11 205 183 7 1481 426 39 0 0 chr3 117474208 117474260 -42125523 + (TA)n Simple_repeat Simple_repeat 1 52 0 7 1481 351 0 0 0 chr3 117474260 117474298 -42125485 + (CA)n Simple_repeat Simple_repeat 2 40 0 7 1481 903 229 64 0 chr3 117474298 117474461 -42125322 - B3 SINE B2 -34 182 8 7 1481 290 0 75 0 chr3 117474496 117474536 -42125247 + (TTATA)n Simple_repeat Simple_repeat 3 45 0 7 1481 3402 122 26 22 chr3 117474604 117475149 -42124634 + Lx LINE L1 6108 6654 0 7 1481 513 138 0 0 chr3 117475627 117475721 -42124062 + (CCTG)n Simple_repeat Simple_repeat 2 95 0 7 1481 206 241 18 18 chr3 117475740 117475795 -42123988 + CT-rich Low_complexity Low_complexity 1 55 0 7 1481 1040 111 0 6 chr3 117475798 117475961 -42123822 + (TTTC)n Simple_repeat Simple_repeat 4 165 0 7 1481 1215 204 0 13 chr3 117476597 117476825 -42122958 - URR1B DNA MER1_type 0 225 1 7 1481 208 250 42 0 chr3 117477001 117477073 -42122710 + T-rich Low_complexity Low_complexity 1 75 0 7 1481 387 304 203 82 chr3 117477276 117477666 -42122117 + MLT1C LTR MaLR 3 439 -28 7 1481 5009 113 17 11 chr3 117478052 117479220 -42120563 + Lx4A LINE L1 5259 6444 -614 7 1481 2765 48 61 0 chr3 117479223 117479601 -42120182 - RLTR10A LTR ERVK -10 401 1 7 1481 3346 145 68 19 chr3 117479601 117480186 -42119597 + Lx4A LINE L1 6444 7057 -1 7 1481 495 264 114 45 chr3 117481838 117482040 -42117743 - B3 SINE B2 0 216 1 7 1481 277 188 0 0 chr3 117482494 117482542 -42117241 + B1F SINE Alu 95 142 -7 7 1481 287 104 0 20 chr3 117482716 117482765 -42117018 + (TA)n Simple_repeat Simple_repeat 1 48 0 7 1481 23 0 0 0 chr3 117482789 117482812 -42116971 + AT_rich Low_complexity Low_complexity 1 23 0 7 1481 755 150 23 0 chr3 117482813 117482986 -42116797 + (TA)n Simple_repeat Simple_repeat 2 178 0 7 1481 548 306 55 50 chr3 117482989 117483171 -42116612 - ID_B1 SINE B4 -21 203 21 7 1481 419 204 112 0 chr3 117483173 117483271 -42116512 + B1F2 SINE Alu 24 132 -17 7 1481 21 0 0 0 chr3 117483410 117483431 -42116352 + AT_rich Low_complexity Low_complexity 1 21 0 7 1481 1397 293 165 52 chr3 117483587 117484357 -42115426 + RMER13A LTR ERVK 4 860 0 7 1481 21 0 0 0 chr3 117484595 117484616 -42115167 + AT_rich Low_complexity Low_complexity 1 21 0 7 1481 229 250 28 9 chr3 117484933 117485042 -42114741 + (TA)n Simple_repeat Simple_repeat 2 112 0 7 1481 315 0 0 0 chr3 117485466 117485501 -42114282 + (TG)n Simple_repeat Simple_repeat 2 36 0 7 1481 890 295 57 0 chr3 117485536 117485780 -42114003 - B4A SINE B4 -27 265 8 7 1481 370 288 122 52 chr3 117486134 117486420 -42113363 + L1MEc LINE L1 2125 2430 -3970 7 1481 385 278 27 40 chr3 117486764 117486914 -42112869 + B1F SINE Alu 1 148 -1 7 1481 277 302 28 41 chr3 117486979 117487297 -42112486 + L1MEc LINE L1 2975 3288 -3031 7 1481 453 269 151 66 chr3 117487614 117487932 -42111851 + L1MC LINE L1 3673 4017 -2129 7 1481 259 196 0 0 chr3 117488729 117488775 -42111008 - MIR SINE MIR -105 157 112 7 1481 465 103 0 0 chr3 117489117 117489185 -42110598 + (CTA)n Simple_repeat Simple_repeat 1 68 0 7 1481 346 194 30 0 chr3 117489318 117489385 -42110398 + RSINE1 SINE B4 2 70 -95 7 1481 764 179 0 0 chr3 117489398 117489532 -42110251 - URR1B DNA MER1_type -9 216 83 7 1481 294 292 28 0 chr3 117489585 117489657 -42110126 + RSINE1 SINE B4 63 136 -29 7 1481 446 252 40 33 chr3 117490253 117490405 -42109378 + RSINE1 SINE B4 9 161 -4 7 1481 318 219 139 47 chr3 117491406 117491535 -42108248 + ID_B1 SINE B4 82 222 -2 7 1481 297 270 14 4 chr3 117491559 117491644 -42108139 + ID4 SINE ID 11 94 -58 7 1481 204 40 0 0 chr3 117491658 117491683 -42108100 + (CAAAC)n Simple_repeat Simple_repeat 3 27 0 7 1481 303 221 0 0 chr3 117492365 117492451 -42107332 + (TG)n Simple_repeat Simple_repeat 2 87 0 7 1481 216 86 0 0 chr3 117493011 117493046 -42106737 + (TTTTTG)n Simple_repeat Simple_repeat 1 35 0 7 1481 452 261 80 9 chr3 117493077 117493189 -42106594 - B1F SINE Alu -28 121 2 7 1481 354 45 0 0 chr3 117493969 117494013 -42105770 + (CA)n Simple_repeat Simple_repeat 2 45 0 7 1481 200 59 29 0 chr3 117494674 117494708 -42105075 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 7 1481 183 350 85 43 chr3 117495723 117495911 -42103872 - L3 LINE CR1 -2015 2474 2279 7 1481 564 276 8 0 chr3 117496663 117496786 -42102997 + B1F SINE Alu 26 149 0 7 1481 3852 176 98 16 chr3 117497399 117498335 -42101448 + RLTR25B LTR ERVK 1 1100 -3 7 1481 181 30 29 57 chr3 117499030 117499065 -42100718 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 7 1481 282 161 54 0 chr3 117500825 117500881 -42098902 + B1_Mus2 SINE Alu 1 59 -88 1 1481 684 191 0 0 chr3 117500894 117501072 -42098711 + GA-rich Low_complexity Low_complexity 2 179 0 2 1481 900 146 0 0 chr3 117501080 117501356 -42098427 + (GA)n Simple_repeat Simple_repeat 1 276 0 3 1481 232 161 10 156 chr3 117501357 117501453 -42098330 + RLTR25B LTR ERVK 427 508 -520 4 1481 575 202 0 35 chr3 117501377 117501490 -42098293 + B1_Mur1 SINE Alu 40 148 -1 5 1481 266 297 47 85 chr3 117501650 117501779 -42098004 - B3A SINE B2 -73 125 2 6 1481 4316 66 9 2 chr3 117502090 117502650 -42097133 - L1_Mus3 LINE L1 0 6638 6075 7 1481 216 381 39 8 chr3 117502910 117503037 -42096746 + L2b LINE L2 3241 3371 -4 8 1481 24 0 0 0 chr3 117503146 117503170 -42096613 + AT_rich Low_complexity Low_complexity 1 24 0 9 1481 1336 159 142 21 chr3 117504440 117504722 -42095061 - MTC LTR MaLR -2 419 104 1 1481 719 325 96 41 chr3 117504959 117505396 -42094387 - L2a LINE L2 -19 3407 2947 1 1481 366 23 0 0 chr3 117505700 117505743 -42094040 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 1481 1963 49 0 0 chr3 117506081 117506324 -42093459 - L1Md_F2 LINE L1 0 6582 6340 1 1481 352 283 178 5 chr3 117507413 117507598 -42092185 - ID_B1 SINE B4 -7 217 1 1 1481 252 0 0 0 chr3 117507726 117507754 -42092029 + (A)n Simple_repeat Simple_repeat 1 28 0 1 1481 249 360 84 47 chr3 117508165 117508378 -42091405 - MIRb SINE MIR 0 268 48 1 1481 240 367 94 30 chr3 117509859 117510061 -42089722 + ORR1E LTR MaLR 2 216 -143 1 1481 210 306 48 0 chr3 117510589 117510651 -42089132 + B4A SINE B4 71 135 -157 1 1481 278 284 93 47 chr3 117511068 117511175 -42088608 + B1F SINE Alu 34 145 -4 1 1481 369 0 0 0 chr3 117511186 117511227 -42088556 + (TG)n Simple_repeat Simple_repeat 1 41 0 2 1481 735 244 9 28 chr3 117511278 117511493 -42088290 + B3 SINE B2 1 211 -5 2 1481 447 52 0 0 chr3 117513412 117513470 -42086313 + (TG)n Simple_repeat Simple_repeat 2 59 0 2 1481 816 178 128 24 chr3 117513506 117513689 -42086094 - RMER1B Other Other -737 329 147 2 1481 2583 202 68 53 chr3 117513845 117514554 -42085229 + RMER19B LTR ERVK 1 890 -12 2 1481 250 298 265 47 chr3 117514642 117514857 -42084926 + B4A SINE B4 28 289 -3 2 1481 372 316 43 26 chr3 117515199 117515316 -42084467 + RSINE1 SINE B4 3 121 -44 2 1481 874 291 30 0 chr3 117515452 117515717 -42084066 + Lx6 LINE L1 7186 7458 -2 2 1481 616 200 226 0 chr3 117515876 117516071 -42083712 + Lx9 LINE L1 7265 7503 -141 2 1481 404 200 56 85 chr3 117516129 117516275 -42083508 + ORR1D1 LTR MaLR 166 372 -2 2 1481 327 332 82 10 chr3 117518580 117518775 -42081008 + MER3 DNA MER1_type 1 209 0 3 1481 249 342 96 9 chr3 117518844 117518959 -42080824 + Kanga2_a DNA Tc2 38 162 -726 3 1481 234 0 0 0 chr3 117519360 117519386 -42080397 + (TC)n Simple_repeat Simple_repeat 1 26 0 3 1481 357 24 0 0 chr3 117519386 117519427 -42080356 + (CA)n Simple_repeat Simple_repeat 1 42 0 3 1481 244 108 0 0 chr3 117519670 117519707 -42080076 + L1_Mur3 LINE L1 5532 5568 -312 3 1481 383 151 0 0 chr3 117519766 117519852 -42079931 - Lx4A LINE L1 0 7058 6973 3 1481 24 0 0 0 chr3 117519888 117519912 -42079871 + GC_rich Low_complexity Low_complexity 1 24 0 3 1481 229 314 51 0 chr3 117520170 117520288 -42079495 + L1MC4 LINE L1 7486 7609 -433 3 1481 367 137 0 27 chr3 117520296 117520371 -42079412 + GA-rich Low_complexity Low_complexity 2 74 0 3 1481 27 29 0 0 chr3 117520927 117520961 -42078822 + AT_rich Low_complexity Low_complexity 1 34 0 3 1481 632 289 16 16 chr3 117521298 117521481 -42078302 + B3A SINE B2 1 183 -15 4 1481 214 288 122 24 chr3 117521550 117521632 -42078151 + MIRb SINE MIR 164 253 -15 4 1481 615 293 0 75 chr3 117521701 117521889 -42077894 - B3 SINE B2 -40 176 3 4 1481 498 59 0 0 chr3 117522902 117522923 -42076860 + (GAA)n Simple_repeat Simple_repeat 2 22 0 4 1481 1125 118 0 0 chr3 117522923 117523101 -42076682 + (GGA)n Simple_repeat Simple_repeat 3 180 0 4 1481 498 59 0 0 chr3 117523101 117523147 -42076636 + (GAA)n Simple_repeat Simple_repeat 2 47 0 4 1481 796 214 44 103 chr3 117523642 117523845 -42075938 + B3A SINE B2 1 191 -4 4 1481 617 316 70 7 chr3 117525524 117525795 -42073988 + B4A SINE B4 5 292 0 4 1481 198 0 0 0 chr3 117526337 117526359 -42073424 + (TAAAAA)n Simple_repeat Simple_repeat 3 24 0 4 1481 2210 34 98 3 chr3 117526658 117526955 -42072828 - L1Md_F2 LINE L1 -246 6336 6012 4 1481 1590 123 8 19 chr3 117526955 117527220 -42072563 + L1Md_F2 LINE L1 6309 6570 -12 5 1481 559 355 83 18 chr3 117527397 117527853 -42071930 + L2a LINE L2 2172 2657 -762 5 1481 221 304 78 36 chr3 117527865 117528032 -42071751 + L2a LINE L2 3239 3412 -14 5 1481 3715 146 48 2 chr3 117528373 117528992 -42070791 + Lx2B LINE L1 6350 6997 -3 5 1481 266 347 70 50 chr3 117529127 117529327 -42070456 - MIRb SINE MIR -29 239 36 5 1481 21 0 0 0 chr3 117530348 117530369 -42069414 + AT_rich Low_complexity Low_complexity 1 21 0 5 1481 242 274 0 0 chr3 117530434 117530496 -42069287 + (CA)n Simple_repeat Simple_repeat 1 62 0 5 1481 29 28 0 0 chr3 117530504 117530540 -42069243 + AT_rich Low_complexity Low_complexity 1 36 0 5 1481 184 315 109 0 chr3 117531134 117531226 -42068557 - L2b LINE L2 -1 3374 3273 5 1481 1129 55 0 40 chr3 117531805 117531957 -42067826 + B1_Mus1 SINE Alu 1 146 -2 5 1481 886 93 0 146 chr3 117533120 117533284 -42066499 + B1_Mus1 SINE Alu 9 148 0 5 1481 183 222 36 143 chr3 117533329 117533413 -42066370 - L4 LINE RTE -635 1394 1320 6 1481 235 345 11 0 chr3 117533913 117534000 -42065783 + Lx8 LINE L1 7185 7272 -201 6 1481 35 24 0 0 chr3 117534357 117534399 -42065384 + AT_rich Low_complexity Low_complexity 1 42 0 6 1481 189 107 0 0 chr3 117535959 117535987 -42063796 + (A)n Simple_repeat Simple_repeat 1 28 0 6 1481 248 285 192 41 chr3 117536024 117536196 -42063587 - B3A SINE B2 0 198 1 6 1481 861 84 0 0 chr3 117537821 117537940 -42061843 + (GAAA)n Simple_repeat Simple_repeat 4 122 0 6 1481 606 28 0 0 chr3 117537940 117538012 -42061771 + (GGGA)n Simple_repeat Simple_repeat 1 72 0 6 1481 25 31 0 0 chr3 117538132 117538164 -42061619 + AT_rich Low_complexity Low_complexity 1 32 0 6 1481 204 97 0 0 chr3 117538175 117538206 -42061577 + (TATG)n Simple_repeat Simple_repeat 2 32 0 6 1481 659 318 57 11 chr3 117538235 117538499 -42061284 - B4A SINE B4 -8 284 9 6 1481 282 292 15 0 chr3 117538571 117538636 -42061147 - RSINE1 SINE B4 -24 141 76 7 1481 2262 72 46 27 chr3 117539212 117539540 -42060243 + L1_Mus2 LINE L1 6232 6565 -1 7 1481 709 277 34 41 chr3 117539634 117539928 -42059855 - B4 SINE B4 0 292 1 7 1481 666 205 133 26 chr3 117540556 117540751 -42059032 - B3 SINE B2 0 216 1 7 1481 240 356 16 77 chr3 117540927 117541122 -42058661 - MIR SINE MIR -81 181 5 7 1481 27 0 0 0 chr3 117542100 117542127 -42057656 + AT_rich Low_complexity Low_complexity 1 27 0 7 1481 567 287 42 0 chr3 117542146 117542289 -42057494 + RSINE1 SINE B4 11 159 -6 7 1481 252 0 0 0 chr3 117543152 117543180 -42056603 + (T)n Simple_repeat Simple_repeat 1 28 0 7 1481 216 0 0 0 chr3 117543597 117543621 -42056162 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 7 1481 1112 75 0 13 chr3 117544502 117544651 -42055132 - B1_Mm SINE Alu 0 147 1 7 1481 2565 165 22 13 chr3 117545381 117545830 -42053953 + Lx4A LINE L1 6606 7058 0 8 1481 384 22 0 0 chr3 117545964 117546009 -42053774 + (CA)n Simple_repeat Simple_repeat 2 46 0 8 1481 439 295 114 0 chr3 117546074 117546267 -42053516 + ID_B1 SINE B4 1 215 -9 8 1481 607 247 31 12 chr3 117547089 117547249 -42052534 + RSINE1 SINE B4 2 164 -1 8 1481 192 298 36 0 chr3 117547508 117547592 -42052191 - MIR SINE MIR -102 160 74 8 1481 453 208 108 27 chr3 117547739 117547884 -42051899 + B3 SINE B2 1 210 -6 8 1481 396 0 0 0 chr3 117547884 117547928 -42051855 + (CA)n Simple_repeat Simple_repeat 2 45 0 8 1481 437 209 88 22 chr3 117549040 117549177 -42050606 - B1_Mur1 SINE Alu -3 146 1 8 1481 928 250 10 5 chr3 117549651 117549848 -42049935 + B4A SINE B4 5 202 -90 8 1481 231 170 0 0 chr3 117549910 117549957 -42049826 + (TA)n Simple_repeat Simple_repeat 1 47 0 8 1481 2600 94 11 0 chr3 117549999 117550370 -42049413 - L1_Mus3 LINE L1 -9 6629 6255 9 1481 22 0 0 0 chr3 117550779 117550801 -42048982 + AT_rich Low_complexity Low_complexity 1 22 0 9 1481 2999 57 0 20 chr3 117551007 117551403 -42048380 - MTB LTR MaLR -12 388 1 9 1481 390 237 0 0 chr3 117551463 117551560 -42048223 + (TA)n Simple_repeat Simple_repeat 1 97 0 9 1481 489 273 122 51 chr3 117552939 117553136 -42046647 - B4 SINE B4 0 292 82 9 1481 266 182 0 49 chr3 117553137 117553218 -42046565 + T-rich Low_complexity Low_complexity 3 79 0 9 1481 420 242 65 50 chr3 117553344 117553483 -42046300 + B3A SINE B2 30 170 -28 9 1481 284 316 92 78 chr3 117553560 117553670 -42046113 + MLT1B LTR MaLR 116 225 -165 9 1481 1263 94 0 0 chr3 117553670 117553850 -42045933 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 9 1481 284 316 92 78 chr3 117553850 117554010 -42045773 + MLT1B LTR MaLR 226 390 0 9 1481 217 0 0 57 chr3 117554576 117554611 -42045172 + (CAAAAA)n Simple_repeat Simple_repeat 4 36 0 9 1481 26 0 0 0 chr3 117554759 117554785 -42044998 + AT_rich Low_complexity Low_complexity 1 26 0 1 1481 197 33 33 0 chr3 117555297 117555327 -42044456 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1 1481 1194 42 0 0 chr3 117555327 117555471 -42044312 - B1_Mm SINE Alu -3 144 1 1 1481 265 338 12 0 chr3 117555492 117555572 -42044211 - RSINE1 SINE B4 -4 161 81 1 1481 243 211 0 0 chr3 117555830 117555887 -42043896 + MLT1A1 LTR MaLR 340 396 -12 1 1481 184 273 18 0 chr3 117555982 117556037 -42043746 + MIRc SINE MIR 88 143 -125 1 1481 364 365 34 7 chr3 117556147 117556296 -42043487 - MER58A DNA MER1_type -24 200 48 1 1481 270 263 26 0 chr3 117556419 117556495 -42043288 - ID2 SINE ID -2 81 4 1 1481 203 269 19 114 chr3 117557551 117557656 -42042127 - MIRb SINE MIR -58 210 116 1 1481 288 0 0 0 chr3 117557680 117557712 -42042071 + (TAAA)n Simple_repeat Simple_repeat 2 33 0 1 1481 305 308 46 46 chr3 117557727 117557836 -42041947 - MIRm SINE MIR -3 273 165 1 1481 234 0 0 0 chr3 117557960 117557986 -42041797 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 1 1481 295 281 9 78 chr3 117558004 117558121 -42041662 + PB1D7 SINE Alu 12 120 0 1 1481 546 16 0 0 chr3 117559288 117559351 -42040432 + (TC)n Simple_repeat Simple_repeat 2 64 0 1 1481 347 279 58 0 chr3 117559539 117559643 -42040140 + PB1D10 SINE Alu 2 111 -6 1 1481 287 279 45 9 chr3 117559744 117559856 -42039927 + PB1D9 SINE Alu 5 120 0 1 1481 23 0 0 0 chr3 117560214 117560237 -42039546 + AT_rich Low_complexity Low_complexity 1 23 0 1 1481 235 330 53 11 chr3 117560273 117560378 -42039405 + B3A SINE B2 49 157 -59 1 1481 522 0 0 0 chr3 117560657 117560715 -42039068 + (TA)n Simple_repeat Simple_repeat 2 59 0 1 1481 818 188 96 5 chr3 117561080 117561267 -42038516 + URR1A DNA MER1_type 17 220 -6 1 1481 5013 35 2 2 chr3 117562216 117562812 -42036971 - L1Md_F2 LINE L1 -2 6580 5985 1 1481 1968 138 25 15 chr3 117562982 117563307 -42036476 + ORR1A4 LTR MaLR 2 329 0 1 1481 530 327 60 38 chr3 117563408 117563643 -42036140 + B4 SINE B4 43 282 -10 1 1481 2245 159 69 63 chr3 117563679 117563896 -42035887 + RMER20B LTR ERVK 108 341 -286 1 1481 324 70 0 0 chr3 117563896 117563939 -42035844 + (TA)n Simple_repeat Simple_repeat 1 43 0 1 1481 2245 159 69 63 chr3 117563939 117564230 -42035553 + RMER20B LTR ERVK 342 619 -8 1 1481 275 229 0 32 chr3 117564572 117564635 -42035148 + RMER21B LTR ERV1 108 168 -674 1 1481 362 226 102 31 chr3 117564669 117564797 -42034986 + RMER21B LTR ERV1 303 439 -403 1 1481 207 0 0 0 chr3 117565048 117565071 -42034712 + (T)n Simple_repeat Simple_repeat 1 23 0 1 1481 228 35 0 0 chr3 117565910 117565939 -42033844 + (TCCC)n Simple_repeat Simple_repeat 3 31 0 1 1481 298 312 0 0 chr3 117566377 117566457 -42033326 + ID4_ SINE ID 1 80 -3 1 1481 23 0 0 0 chr3 117566493 117566516 -42033267 + AT_rich Low_complexity Low_complexity 1 23 0 1 1481 312 352 57 79 chr3 117566566 117566794 -42032989 - MLT1G3 LTR MaLR -334 261 39 1 1481 186 174 0 0 chr3 117567367 117567413 -42032370 + (TA)n Simple_repeat Simple_repeat 1 46 0 1 1481 317 152 61 42 chr3 117567430 117567595 -42032188 + (TA)n Simple_repeat Simple_repeat 1 168 0 1 1481 402 227 174 78 chr3 117568323 117568490 -42031293 - B3A SINE B2 -4 194 12 1 1481 378 352 29 68 chr3 117568663 117568943 -42030840 + B4A SINE B4 12 280 -12 1 1481 446 319 52 21 chr3 117570027 117570219 -42029564 - Arthur1C DNA Tip100 -125 238 41 1 1481 364 314 76 35 chr3 117570466 117570611 -42029172 + RSINE1 SINE B4 13 163 -2 1 1481 186 143 0 0 chr3 117571355 117571390 -42028393 + (AGGGGG)n Simple_repeat Simple_repeat 3 37 0 1 1482 30 0 0 0 chr3 117571962 117571992 -42027791 + GC_rich Low_complexity Low_complexity 1 30 0 1 1482 258 32 0 0 chr3 117572667 117572698 -42027085 + (TC)n Simple_repeat Simple_repeat 2 32 0 1 1482 283 286 51 13 chr3 117572727 117572805 -42026978 + B1F SINE Alu 1 81 -68 1 1482 444 19 0 0 chr3 117573409 117573462 -42026321 + (TAAA)n Simple_repeat Simple_repeat 4 56 0 1 1482 249 221 10 104 chr3 117574317 117574334 -42025449 + CYRA11_Mm Unknown Y-chromosome 187 203 -414 1 1482 5366 55 11 31 chr3 117574334 117575054 -42024729 - L1Md_F2 LINE L1 0 6582 5877 1 1482 249 221 10 104 chr3 117575054 117575132 -42024651 + CYRA11_Mm Unknown Y-chromosome 204 273 -344 1 1482 545 168 0 0 chr3 117575132 117575149 -42024634 - URR1B DNA MER1_type -23 202 108 1 1482 186 43 0 0 chr3 117575361 117575384 -42024399 + (T)n Simple_repeat Simple_repeat 1 23 0 1 1482 428 320 33 82 chr3 117575502 117575866 -42023917 + ERVL-E-int LTR ERVL 4156 4568 -1189 1 1482 374 350 16 0 chr3 117576188 117576311 -42023472 - MLT1I LTR MaLR -279 132 8 1 1482 296 286 65 32 chr3 117576443 117576566 -42023217 + MIRb SINE MIR 80 206 -62 1 1482 556 296 41 35 chr3 117577393 117577712 -42022071 - L1MB8 LINE L1 -6 6172 5852 1 1482 217 298 0 0 chr3 117577815 117577862 -42021921 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 1482 498 258 113 8 chr3 117578099 117578231 -42021552 + MLT1A0 LTR MaLR 207 352 -13 1 1482 555 311 235 15 chr3 117578231 117578704 -42021079 + MLT1A0-int LTR MaLR 2 578 -1157 1 1482 3483 71 19 0 chr3 117578772 117579306 -42020477 - L1_Mus1 LINE L1 -651 5916 5373 1 1482 1460 85 0 0 chr3 117579306 117579505 -42020278 + L1_Mus1 LINE L1 6369 6567 0 1 1482 24 0 0 0 chr3 117579510 117579534 -42020249 + AT_rich Low_complexity Low_complexity 1 24 0 1 1482 257 461 17 0 chr3 117579571 117579688 -42020095 + MLT1A0-int LTR MaLR 1130 1248 -487 1 1482 612 316 113 53 chr3 117579729 117580084 -42019699 + MLT1A0-int LTR MaLR 1354 1729 -6 1 1482 304 298 73 40 chr3 117580124 117580602 -42019181 - L1M4 LINE L1 -1502 4644 4151 1 1482 236 158 35 0 chr3 117580631 117580688 -42019095 + (TCTA)n Simple_repeat Simple_repeat 3 61 0 1 1482 295 278 81 27 chr3 117580688 117580799 -42018984 - MLT2B4 LTR ERVL -44 512 396 1 1482 250 287 533 47 chr3 117581002 117581214 -42018569 - MLT2B4 LTR ERVL -235 321 7 1 1482 1160 345 81 42 chr3 117581374 117581970 -42017813 + MER21B LTR ERV1 133 751 -112 1 1482 787 273 50 111 chr3 117582451 117582974 -42016809 - ERVL-B4-int LTR ERVL -210 5504 5014 1 1482 463 270 51 0 chr3 117583486 117583623 -42016160 - ERVL-B4-int LTR ERVL -788 4969 4826 1 1482 353 261 15 22 chr3 117584213 117584350 -42015433 + ERVL-B4-int LTR ERVL 3860 3995 -1719 1 1482 207 100 0 0 chr3 117584382 117584412 -42015371 + (CAAT)n Simple_repeat Simple_repeat 3 32 0 1 1482 1939 196 133 1 chr3 117584412 117584955 -42014828 - Lx4B LINE L1 -28 6972 6333 1 1482 1758 198 40 0 chr3 117584954 117585359 -42014424 + Lx4B LINE L1 5898 6318 -740 1 1482 946 123 33 0 chr3 117585982 117586196 -42013587 + CT-rich Low_complexity Low_complexity 1 221 0 1 1482 183 129 0 0 chr3 117586198 117586229 -42013554 + (TCC)n Simple_repeat Simple_repeat 2 32 0 1 1482 318 262 38 19 chr3 117586274 117586379 -42013404 + CT-rich Low_complexity Low_complexity 1 107 0 1 1482 220 415 0 0 chr3 117586379 117586461 -42013322 - ID4 SINE ID -1 82 1 1 1482 21 36 0 0 chr3 117586669 117586697 -42013086 + AT_rich Low_complexity Low_complexity 1 28 0 1 1482 378 217 0 0 chr3 117586777 117586892 -42012891 + (CA)n Simple_repeat Simple_repeat 2 116 0 1 1482 343 65 0 42 chr3 117586903 117586951 -42012832 + HAL1-3A_ME LINE L1 1976 2021 -837 1 1482 328 264 11 42 chr3 117587222 117587317 -42012466 - B3 SINE B2 0 216 125 1 1482 1912 140 128 6 chr3 117587321 117587665 -42012118 - ORR1B1 LTR MaLR -8 386 1 1 1482 226 305 0 89 chr3 117588560 117588650 -42011133 - ID4_ SINE ID 0 83 2 1 1482 351 284 15 0 chr3 117589800 117589934 -42009849 - L1ME1 LINE L1 -4 6175 6040 1 1482 1217 33 0 7 chr3 117590655 117590808 -42008975 + B2_Mm2 SINE B2 2 153 -42 1 1482 461 17 17 0 chr3 117590808 117590866 -42008917 + (TA)n Simple_repeat Simple_repeat 1 59 0 1 1482 1128 74 0 7 chr3 117590868 117591017 -42008766 + B1_Mus1 SINE Alu 1 148 0 1 1482 225 140 17 34 chr3 117591388 117591447 -42008336 + T-rich Low_complexity Low_complexity 2 59 0 1 1482 360 246 48 81 chr3 117593478 117593602 -42006181 + RSINE1 SINE B4 3 122 -43 1 1482 284 318 27 27 chr3 117593651 117593761 -42006022 + MER31-int LTR ERV1 426 535 -4401 1 1482 230 235 118 0 chr3 117594345 117594413 -42005370 - MTEa LTR MaLR -14 365 290 1 1482 544 291 7 15 chr3 117594493 117594629 -42005154 - MTEa LTR MaLR -241 138 4 1 1482 960 149 192 6 chr3 117594928 117595110 -42004673 + B3 SINE B2 1 216 0 1 1482 726 234 55 20 chr3 117595337 117595538 -42004245 + B3 SINE B2 2 209 -7 1 1482 189 209 0 0 chr3 117595613 117595680 -42004103 + GA-rich Low_complexity Low_complexity 3 69 0 1 1482 1341 226 132 43 chr3 117595991 117596552 -42003231 - Lx7 LINE L1 -281 7415 6805 1 1482 371 149 13 39 chr3 117596568 117596645 -42003138 + 4.5SRNA scRNA scRNA 6 80 -14 1 1482 505 0 31 0 chr3 117597216 117597281 -42002502 + (CA)n Simple_repeat Simple_repeat 2 68 0 1 1482 213 65 0 0 chr3 117597281 117597312 -42002471 + (GA)n Simple_repeat Simple_repeat 1 31 0 1 1482 300 342 49 6 chr3 117597457 117597619 -42002164 - Lx8 LINE L1 -350 7123 6955 1 1482 21 0 0 0 chr3 117597854 117597875 -42001908 + AT_rich Low_complexity Low_complexity 1 21 0 1 1482 576 15 0 0 chr3 117598477 117598544 -42001239 - L1Md_F2 LINE L1 -395 6187 6121 1 1482 3212 41 0 10 chr3 117598545 117598941 -42000842 + L1Md_F2 LINE L1 6178 6569 -13 1 1482 22 0 0 0 chr3 117599749 117599771 -42000012 + AT_rich Low_complexity Low_complexity 1 22 0 1 1482 216 0 0 0 chr3 117600029 117600053 -41999730 + (TTAA)n Simple_repeat Simple_repeat 4 27 0 1 1482 23 33 0 0 chr3 117600168 117600198 -41999585 + AT_rich Low_complexity Low_complexity 1 30 0 1 1482 299 333 0 12 chr3 117600568 117600650 -41999133 + ID2 SINE ID 1 81 -2 1 1482 297 336 56 9 chr3 117600650 117600676 -41999107 + B4 SINE B4 1 113 -179 1 1482 341 283 79 62 chr3 117601294 117601471 -41998312 + L1MEg LINE L1 496 675 -5409 1 1482 288 0 0 0 chr3 117601956 117601988 -41997795 + (TC)n Simple_repeat Simple_repeat 1 32 0 1 1482 396 0 0 0 chr3 117601988 117602031 -41997752 + (CA)n Simple_repeat Simple_repeat 1 44 0 1 1482 959 234 0 5 chr3 117602530 117602715 -41997068 + MTD LTR MaLR 1 184 -235 1 1482 329 322 61 7 chr3 117603686 117603833 -41995950 - L1M4 LINE L1 -1569 4577 4423 1 1482 337 314 161 25 chr3 117603842 117604041 -41995742 - Helitron1Na_Mam RC Helitron -12 1050 825 2 1482 681 314 91 54 chr3 117604746 117605022 -41994761 + B4 SINE B4 1 286 -6 2 1482 201 282 0 0 chr3 117605067 117605152 -41994631 + (CA)n Simple_repeat Simple_repeat 1 85 0 2 1482 441 292 71 55 chr3 117605234 117605544 -41994239 + L1MC LINE L1 2262 2566 -3580 2 1482 214 299 51 25 chr3 117605577 117605656 -41994127 + ID4 SINE ID 3 83 0 2 1482 333 335 85 5 chr3 117605707 117605908 -41993875 + L1M5 LINE L1 2646 2862 -3284 2 1482 593 299 81 11 chr3 117605964 117606150 -41993633 - B4 SINE B4 -4 288 90 2 1482 252 130 0 0 chr3 117606190 117606236 -41993547 + (GA)n Simple_repeat Simple_repeat 2 47 0 2 1482 254 293 117 61 chr3 117606762 117607106 -41992677 + L1M5 LINE L1 3245 3605 -2535 2 1482 213 94 0 0 chr3 117607153 117607185 -41992598 + (TTCC)n Simple_repeat Simple_repeat 3 34 0 2 1482 323 259 31 118 chr3 117607308 117607435 -41992348 + PB1D10 SINE Alu 2 117 0 2 1482 239 273 116 27 chr3 117608129 117608276 -41991507 - L1MC LINE L1 -1139 5007 4848 2 1482 555 66 0 0 chr3 117608534 117608610 -41991173 + (CA)n Simple_repeat Simple_repeat 2 77 0 2 1482 314 322 118 20 chr3 117609015 117609167 -41990616 + MIR SINE MIR 95 265 -3 2 1482 3042 67 7 15 chr3 117609496 117609906 -41989877 + L1Md_F2 LINE L1 6174 6580 -2 2 1482 860 270 89 28 chr3 117610142 117610466 -41989317 - MT2A LTR ERVL -2 531 188 2 1482 653 224 35 29 chr3 117611743 117611913 -41987870 - Lx7 LINE L1 0 7696 7526 2 1482 199 183 12 12 chr3 117611939 117612022 -41987761 + (TA)n Simple_repeat Simple_repeat 1 83 0 2 1482 235 101 74 63 chr3 117612029 117612124 -41987659 - Lx7 LINE L1 -156 7540 7445 2 1482 4993 180 78 77 chr3 117612139 117612892 -41986891 - L1_Mur3 LINE L1 -1027 4853 4100 2 1482 1147 35 7 7 chr3 117612892 117613036 -41986747 + B1_Mus2 SINE Alu 4 147 0 2 1482 4993 180 78 77 chr3 117613036 117613672 -41986111 - L1_Mur3 LINE L1 -1781 4099 3462 2 1482 2952 199 129 7 chr3 117613695 117614392 -41985391 - Lx2B LINE L1 -1 6999 6218 2 1482 225 158 0 0 chr3 117614393 117614431 -41985352 - L1_Mur3 LINE L1 -2424 3456 3419 2 1482 599 91 57 66 chr3 117614436 117614542 -41985241 - BC1_Mm scRNA scRNA -47 105 1 2 1482 3501 178 102 14 chr3 117614550 117615357 -41984426 - L1_Mur3 LINE L1 -2471 3409 2532 2 1482 2740 226 40 17 chr3 117615355 117616218 -41983565 - L1_Mur3 LINE L1 -6410 1318 298 2 1482 718 228 0 0 chr3 117616720 117616847 -41982936 - B1_Mus1 SINE Alu -20 128 2 2 1482 377 351 41 72 chr3 117617346 117617665 -41982118 - L2 LINE L2 -2612 807 499 2 1482 1059 233 105 15 chr3 117617743 117618009 -41981774 + MTE2b LTR MaLR 2 291 -88 2 1482 430 253 73 52 chr3 117618826 117619018 -41980765 - B3A SINE B2 -1 197 2 2 1482 252 0 0 0 chr3 117619018 117619046 -41980737 + (TTA)n Simple_repeat Simple_repeat 1 28 0 2 1482 30 27 0 0 chr3 117619716 117619753 -41980030 + AT_rich Low_complexity Low_complexity 1 37 0 2 1482 213 232 125 0 chr3 117620375 117620431 -41979352 + B1F SINE Alu 85 147 -2 2 1482 1070 211 9 18 chr3 117620475 117620692 -41979091 - B3 SINE B2 -1 215 1 2 1482 491 318 148 8 chr3 117620733 117620975 -41978808 - L1M5 LINE L1 -3038 3108 2817 2 1482 454 343 70 0 chr3 117620975 117621176 -41978607 - ID_B1 SINE B4 -9 215 1 2 1482 491 325 143 14 chr3 117621176 117621414 -41978369 - L1M5 LINE L1 -3330 2816 2572 2 1482 21 0 0 0 chr3 117621421 117621442 -41978341 + AT_rich Low_complexity Low_complexity 1 21 0 2 1482 4801 198 39 11 chr3 117621730 117623512 -41976271 - Lx5 LINE L1 -3 7047 5191 2 1482 530 266 31 6 chr3 117623526 117623685 -41976098 - L1VL4 LINE L1 -5619 683 521 2 1482 6094 57 18 4 chr3 117624037 117624811 -41974972 - L1Md_F2 LINE L1 -12 6570 5786 2 1482 3322 45 0 0 chr3 117624811 117625207 -41974576 + L1Md_F2 LINE L1 5367 5762 -121 2 1482 413 229 56 32 chr3 117625208 117625334 -41974449 - Lx7 LINE L1 -10 7686 7558 2 1482 183 80 0 0 chr3 117625334 117625359 -41974424 + (TAA)n Simple_repeat Simple_repeat 3 27 0 2 1482 1368 197 30 50 chr3 117625379 117625742 -41974041 - Lx7 LINE L1 -195 7501 7146 2 1482 22 80 0 0 chr3 117626565 117626615 -41973168 + AT_rich Low_complexity Low_complexity 1 50 0 2 1482 803 90 28 0 chr3 117626816 117626960 -41972823 + (TG)n Simple_repeat Simple_repeat 2 149 0 2 1482 1271 71 19 3 chr3 117627053 117627367 -41972416 + (TCTA)n Simple_repeat Simple_repeat 1 319 0 2 1482 219 293 35 0 chr3 117627386 117627444 -41972339 - ID2 SINE ID -17 66 7 2 1482 359 271 0 56 chr3 117628747 117628871 -41970912 + MIRc SINE MIR 64 173 -95 2 1482 195 400 38 0 chr3 117629252 117629332 -41970451 + MIR3 SINE MIR 90 172 -36 2 1482 241 224 0 0 chr3 117630557 117630606 -41969177 - RMER15 LTR ERVL -105 470 422 2 1482 269 224 102 34 chr3 117630613 117630701 -41969082 - Lx8 LINE L1 -217 7256 7163 2 1482 238 174 0 42 chr3 117631151 117631223 -41968560 + CT-rich Low_complexity Low_complexity 3 71 0 2 1482 21 0 0 0 chr3 117631616 117631637 -41968146 + AT_rich Low_complexity Low_complexity 1 21 0 2 1482 5649 84 4 30 chr3 117632841 117633635 -41966148 + L1Md_F2 LINE L1 5711 6483 -99 2 1482 22 35 0 0 chr3 117634692 117634721 -41965062 + AT_rich Low_complexity Low_complexity 1 29 0 2 1482 3157 42 5 0 chr3 117635026 117635411 -41964372 + L1Md_F2 LINE L1 6182 6568 -14 2 1482 289 337 122 56 chr3 117635560 117636148 -41963635 - L1MCb LINE L1 -4886 1159 533 2 1482 1730 233 22 3 chr3 117636278 117636635 -41963148 - MTC LTR MaLR -57 364 1 2 1482 357 219 0 58 chr3 117638684 117638771 -41961012 - B2_Mm2 SINE B2 -113 82 1 2 1482 197 364 7 44 chr3 117639604 117639739 -41960044 + L2 LINE L2 2504 2633 -786 2 1482 228 100 0 0 chr3 117639815 117639855 -41959928 + (TC)n Simple_repeat Simple_repeat 1 40 0 2 1482 444 297 43 35 chr3 117640074 117640299 -41959484 - L1MB8 LINE L1 -99 6085 5862 2 1482 252 324 80 13 chr3 117640396 117640471 -41959312 + ID4 SINE ID 2 81 -2 2 1482 687 279 53 10 chr3 117640705 117640911 -41958872 - B3 SINE B2 0 216 2 2 1482 186 0 0 81 chr3 117643309 117643346 -41956437 + (CA)n Simple_repeat Simple_repeat 1 34 0 2 1482 851 306 88 58 chr3 117643487 117643921 -41955862 - Lx8 LINE L1 -187 7286 6840 2 1482 453 331 117 31 chr3 117644283 117644573 -41955210 - L1MEf LINE L1 -5288 912 598 2 1482 243 182 39 13 chr3 117644994 117645072 -41954711 + L1M2 LINE L1 1989 2057 -4792 2 1482 2299 319 96 31 chr3 117645166 117647243 -41952540 + L1M2 LINE L1 3890 6102 -743 2 1482 297 328 59 32 chr3 117647270 117647456 -41952327 + L1M2 LINE L1 6194 6384 -618 2 1482 21 36 0 0 chr3 117647568 117647596 -41952187 + AT_rich Low_complexity Low_complexity 1 28 0 2 1482 1095 139 32 5 chr3 117647937 117648125 -41951658 - B2_Mm1t SINE B2 0 193 1 2 1482 1027 116 1 0 chr3 117648125 117648286 -41951497 - Lx3C LINE L1 -1134 5842 5696 2 1482 1698 265 15 2 chr3 117648556 117648964 -41950819 - MTD LTR MaLR 0 419 7 2 1482 1444 137 82 57 chr3 117649073 117649352 -41950431 + MT2B LTR ERVL 1 286 -315 2 1482 1069 181 20 12 chr3 117649314 117649565 -41950218 + ORR1B1-int LTR MaLR 720 972 -991 2 1482 1713 53 0 0 chr3 117649565 117649773 -41950010 + L1Md_F2 LINE L1 5379 5586 -297 2 1482 7924 47 2 11 chr3 117649773 117650766 -41949017 + L1Md_F2 LINE L1 5587 6570 -12 2 1482 4885 150 44 95 chr3 117650768 117651817 -41947966 + ORR1B1-int LTR MaLR 969 1963 0 2 1482 1639 188 27 99 chr3 117651824 117652197 -41947586 + ORR1B1 LTR MaLR 41 386 -8 2 1482 780 245 75 25 chr3 117652648 117652849 -41946934 + B3 SINE B2 1 211 -5 2 1482 29 60 0 0 chr3 117652947 117652997 -41946786 + AT_rich Low_complexity Low_complexity 1 50 0 2 1482 509 194 13 21 chr3 117653001 117653238 -41946545 + RMER17A2 LTR ERVK 279 513 -393 2 1482 25 31 0 0 chr3 117653707 117653739 -41946044 + AT_rich Low_complexity Low_complexity 1 32 0 2 1482 1299 91 21 0 chr3 117653750 117653937 -41945846 + B2_Mm2 SINE B2 4 194 -1 2 1482 228 35 0 0 chr3 117654005 117654034 -41945749 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 2 1482 229 164 0 32 chr3 117654410 117654473 -41945310 + (CAAA)n Simple_repeat Simple_repeat 3 63 0 2 1482 632 311 14 19 chr3 117654736 117654952 -41944831 + ID_B1 SINE B4 2 216 -8 2 1482 320 284 76 49 chr3 117655003 117655188 -41944595 + MLT-int LTR MaLR 483 672 -1063 2 1482 312 220 203 37 chr3 117655193 117655393 -41944390 - L1_Mur3 LINE L1 -3478 2402 2151 2 1482 22 0 0 0 chr3 117655398 117655420 -41944363 + AT_rich Low_complexity Low_complexity 1 22 0 2 1482 397 342 23 17 chr3 117655428 117655616 -41944167 + Lx7 LINE L1 6943 7143 -330 2 1482 1222 54 0 0 chr3 117655617 117655764 -41944019 + B1_Mus2 SINE Alu 1 147 0 2 1482 309 51 0 0 chr3 117655775 117655814 -41943969 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 2 1482 258 156 0 0 chr3 117655992 117656037 -41943746 + (TA)n Simple_repeat Simple_repeat 1 45 0 2 1482 216 86 0 0 chr3 117656049 117656084 -41943699 + (GA)n Simple_repeat Simple_repeat 1 35 0 2 1482 2078 272 63 43 chr3 117656161 117656857 -41942926 + Lx6 LINE L1 6750 7459 -1 2 1482 486 0 0 0 chr3 117656905 117656959 -41942824 + (TTTA)n Simple_repeat Simple_repeat 4 57 0 2 1482 1222 21 0 0 chr3 117656961 117657102 -41942681 - B1_Mm SINE Alu -6 141 1 2 1482 24 0 0 0 chr3 117657108 117657132 -41942651 + AT_rich Low_complexity Low_complexity 1 24 0 2 1482 1088 358 108 72 chr3 117657233 117658123 -41941660 + MLT-int LTR MaLR 802 1723 -12 2 1482 235 170 37 19 chr3 117658215 117658269 -41941514 + ORR1D2 LTR MaLR 315 369 -1 2 1482 1297 254 85 20 chr3 117658272 117658767 -41941016 - RLTR11A2 LTR ERVK 0 527 1 2 1482 1159 284 61 101 chr3 117659283 117659760 -41940023 - RMER15 LTR ERVL -90 485 28 2 1482 393 176 0 0 chr3 117660068 117660142 -41939641 + (CA)n Simple_repeat Simple_repeat 1 74 0 2 1482 429 97 0 0 chr3 117660141 117660213 -41939570 + (GA)n Simple_repeat Simple_repeat 2 73 0 2 1482 306 0 0 0 chr3 117660441 117660475 -41939308 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 2 1482 335 320 56 25 chr3 117660485 117660645 -41939138 + RSINE1 SINE B4 1 165 0 2 1482 5489 98 26 1 chr3 117661063 117661842 -41937941 + Lx LINE L1 5854 6651 -3 2 1482 4099 158 13 6 chr3 117661860 117662560 -41937223 - Lx2B LINE L1 -644 6356 5652 2 1482 842 141 22 0 chr3 117662560 117662695 -41937088 + Lx2 LINE L1 6379 6516 -481 2 1482 826 161 0 59 chr3 117662693 117662845 -41936938 - Lx2A1 LINE L1 -227 6781 6639 3 1482 27 0 0 0 chr3 117663373 117663400 -41936383 + AT_rich Low_complexity Low_complexity 1 27 0 3 1482 8136 34 13 0 chr3 117663453 117664718 -41935065 - L1Md_F2 LINE L1 -14 6568 5288 3 1482 1268 85 14 29 chr3 117664731 117664938 -41934845 - L1Md_F2 LINE L1 0 6582 6379 3 1482 2189 31 0 0 chr3 117664938 117665195 -41934588 - L1Md_F2 LINE L1 -521 6061 5805 3 1482 285 172 0 0 chr3 117666004 117666068 -41933715 + (CA)n Simple_repeat Simple_repeat 1 64 0 3 1482 21 0 0 0 chr3 117666516 117666537 -41933246 + AT_rich Low_complexity Low_complexity 1 21 0 3 1482 185 0 0 39 chr3 117668521 117668547 -41931236 + (ATG)n Simple_repeat Simple_repeat 3 27 0 3 1482 711 0 0 0 chr3 117669902 117669981 -41929802 + (GAAA)n Simple_repeat Simple_repeat 1 79 0 3 1482 255 31 0 0 chr3 117671310 117671342 -41928441 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 3 1482 183 129 0 0 chr3 117673068 117673099 -41926684 + (TA)n Simple_repeat Simple_repeat 1 31 0 3 1482 21 36 0 0 chr3 117673829 117673857 -41925926 + AT_rich Low_complexity Low_complexity 1 28 0 3 1482 206 180 40 0 chr3 117673896 117673946 -41925837 + (TATATG)n Simple_repeat Simple_repeat 5 56 0 3 1482 654 350 20 30 chr3 117674086 117674289 -41925494 - ID_B1 SINE B4 -22 202 2 3 1482 355 288 0 0 chr3 117674889 117674969 -41924814 + PB1D9 SINE Alu 35 114 -6 3 1482 29 47 0 0 chr3 117674989 117675032 -41924751 + AT_rich Low_complexity Low_complexity 1 43 0 3 1482 390 224 24 0 chr3 117675300 117675385 -41924398 + PB1D10 SINE Alu 30 116 -1 3 1482 25 90 0 0 chr3 117675389 117675456 -41924327 + AT_rich Low_complexity Low_complexity 1 67 0 3 1482 594 0 0 0 chr3 117675707 117675773 -41924010 + (TC)n Simple_repeat Simple_repeat 2 67 0 3 1482 499 272 18 0 chr3 117675783 117675897 -41923886 + B1F SINE Alu 3 118 -31 3 1482 232 258 34 147 chr3 117675804 117675981 -41923802 - YREP_Mm Unknown Unknown -1519 293 137 3 1482 487 325 105 0 chr3 117676145 117676336 -41923447 - B3 SINE B2 -3 213 3 3 1482 465 42 42 0 chr3 117677758 117677830 -41921953 + (CA)n Simple_repeat Simple_repeat 2 76 0 3 1482 477 0 0 0 chr3 117678787 117678840 -41920943 + (TA)n Simple_repeat Simple_repeat 1 53 0 3 1482 318 26 0 0 chr3 117678995 117679034 -41920749 + (A)n Simple_repeat Simple_repeat 1 39 0 3 1482 214 279 15 0 chr3 117679199 117679267 -41920516 + T-rich Low_complexity Low_complexity 2 70 0 3 1482 181 53 0 73 chr3 117680045 117680086 -41919697 + (TTTTG)n Simple_repeat Simple_repeat 2 39 0 3 1482 243 200 0 20 chr3 117683651 117683702 -41916081 + (TATATG)n Simple_repeat Simple_repeat 4 53 0 3 1482 530 254 92 83 chr3 117684025 117684271 -41915512 - MTEa LTR MaLR -12 367 116 3 1482 238 259 17 0 chr3 117684579 117684637 -41915146 + CT-rich Low_complexity Low_complexity 3 61 0 3 1482 33 43 0 0 chr3 117685222 117685269 -41914514 + AT_rich Low_complexity Low_complexity 1 47 0 3 1482 278 246 47 23 chr3 117685347 117685518 -41914265 + (CAAAC)n Simple_repeat Simple_repeat 5 179 0 3 1482 323 263 39 39 chr3 117685531 117685634 -41914149 - Lx7 LINE L1 -388 7308 7206 3 1482 210 143 0 0 chr3 117685688 117685723 -41914060 + (TTCA)n Simple_repeat Simple_repeat 3 37 0 3 1482 4513 244 65 13 chr3 117685731 117686801 -41912982 - Lx6 LINE L1 -169 7291 6166 3 1482 275 136 0 17 chr3 117688660 117688669 -41911114 + (TA)n Simple_repeat Simple_repeat 2 10 0 3 1482 348 24 0 0 chr3 117688669 117688710 -41911073 + (TC)n Simple_repeat Simple_repeat 2 42 0 3 1482 275 136 0 17 chr3 117688710 117688760 -41911023 + (TA)n Simple_repeat Simple_repeat 2 51 0 3 1482 450 0 0 0 chr3 117688779 117688829 -41910954 + (CA)n Simple_repeat Simple_repeat 1 50 0 3 1482 2106 48 0 32 chr3 117690297 117690574 -41909209 + L1_Mus1 LINE L1 6299 6566 -1 3 1482 341 359 79 38 chr3 117690746 117690969 -41908814 + B4A SINE B4 4 239 -53 3 1482 1325 59 0 0 chr3 117690969 117691139 -41908644 + L1Md_T LINE L1 6413 6582 0 3 1482 341 359 79 38 chr3 117691139 117691181 -41908602 + B4A SINE B4 240 280 -12 3 1482 344 22 22 0 chr3 117691185 117691230 -41908553 + (CA)n Simple_repeat Simple_repeat 1 46 0 3 1482 333 0 0 0 chr3 117691230 117691266 -41908517 + (GA)n Simple_repeat Simple_repeat 2 38 0 3 1482 180 0 0 0 chr3 117692536 117692556 -41907227 + (T)n Simple_repeat Simple_repeat 1 20 0 3 1482 26 0 0 0 chr3 117694028 117694054 -41905729 + AT_rich Low_complexity Low_complexity 1 26 0 3 1482 234 217 0 0 chr3 117694280 117694326 -41905457 - ID4_ SINE ID -37 46 1 3 1482 23 0 0 0 chr3 117694664 117694687 -41905096 + AT_rich Low_complexity Low_complexity 1 23 0 3 1482 288 393 50 30 chr3 117695915 117696117 -41903666 - B4A SINE B4 -33 259 54 3 1482 372 180 41 8 chr3 117697814 117697937 -41901846 + GA-rich Low_complexity Low_complexity 2 128 0 3 1482 366 318 7 20 chr3 117697967 117698118 -41901665 + GA-rich Low_complexity Low_complexity 2 150 0 3 1482 474 184 0 35 chr3 117698792 117698905 -41900878 - L1Md_F2 LINE L1 0 6582 6474 3 1482 307 318 92 33 chr3 117700517 117700670 -41899113 - MIRb SINE MIR -81 187 26 3 1482 272 375 138 31 chr3 117701051 117701284 -41898499 + B4 SINE B4 35 292 0 3 1482 207 196 20 0 chr3 117701294 117701345 -41898438 + (CA)n Simple_repeat Simple_repeat 1 52 0 3 1482 315 0 0 0 chr3 117702198 117702233 -41897550 + (CA)n Simple_repeat Simple_repeat 2 36 0 3 1482 298 233 32 32 chr3 117702485 117702578 -41897205 - MIRc SINE MIR -129 139 47 3 1483 262 177 0 37 chr3 117704262 117704344 -41895439 + (TATG)n Simple_repeat Simple_repeat 4 82 0 3 1483 30 0 0 0 chr3 117704432 117704462 -41895321 + AT_rich Low_complexity Low_complexity 1 30 0 3 1483 249 291 17 68 chr3 117704547 117704665 -41895118 - L1MC1 LINE L1 -252 6081 5970 3 1483 508 270 108 61 chr3 117704738 117705081 -41894702 - L1MC1 LINE L1 -605 5739 5381 3 1483 10710 25 0 1 chr3 117705196 117707136 -41892647 - L1Md_T LINE L1 -1 6581 4643 3 1483 508 270 108 61 chr3 117707259 117707602 -41892181 - L1MC LINE L1 -605 5739 5381 3 1483 10710 25 0 1 chr3 117707717 117709657 -41890126 - L1Md_T LINE L1 -1 6581 4643 3 1483 531 267 108 61 chr3 117709780 117710123 -41889660 - L1MC LINE L1 -605 5739 5381 3 1483 364 298 21 0 chr3 117710157 117710251 -41889532 - PB1D10 SINE Alu -8 109 14 3 1483 639 339 60 30 chr3 117710260 117711032 -41888751 - L1MD LINE L1 -3212 2934 2140 3 1483 2481 26 13 9 chr3 117711085 117711400 -41888383 + L1Md_F3 LINE L1 6269 6584 0 3 1483 268 310 79 72 chr3 117711648 117711787 -41887996 + MLT1A0 LTR MaLR 213 352 -13 3 1483 2728 91 10 3 chr3 117712376 117712762 -41887021 + L1_Mus3 LINE L1 6245 6633 -5 3 1483 7435 78 12 5 chr3 117713030 117714489 -41885294 - L1_Mus2 LINE L1 0 6566 5106 3 1483 5721 141 10 40 chr3 117714488 117716133 -41883650 - L1_Mus2 LINE L1 -3770 2113 511 3 1483 335 21 0 41 chr3 117717025 117717074 -41882709 + (TTA)n Simple_repeat Simple_repeat 2 48 0 3 1483 3560 72 45 4 chr3 117717077 117717563 -41882220 - L1Md_F2 LINE L1 -19 6563 6058 3 1483 210 167 0 0 chr3 117717626 117717662 -41882121 + A-rich Low_complexity Low_complexity 1 36 0 3 1483 240 172 0 59 chr3 117717714 117717782 -41882001 + A-rich Low_complexity Low_complexity 3 66 0 3 1483 218 390 51 46 chr3 117718865 117719061 -41880722 + MIRb SINE MIR 1 197 -71 3 1483 209 33 33 0 chr3 117719648 117719678 -41880105 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 3 1483 1165 62 7 0 chr3 117719685 117719830 -41879953 - B1_Mm SINE Alu 0 147 2 3 1483 345 47 0 0 chr3 117719910 117719953 -41879830 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 3 1483 719 114 202 0 chr3 117719960 117720074 -41879709 - B1_Mus2 SINE Alu -9 138 2 3 1483 222 37 0 0 chr3 117720095 117720122 -41879661 + (TC)n Simple_repeat Simple_repeat 1 27 0 3 1483 234 0 0 0 chr3 117720122 117720147 -41879636 + (CA)n Simple_repeat Simple_repeat 1 26 0 3 1483 3646 69 23 0 chr3 117720148 117720627 -41879156 - L1_Mus1 LINE L1 0 6567 6078 3 1483 244 282 0 0 chr3 117721061 117721132 -41878651 + Lx9 LINE L1 6926 6996 -648 3 1483 1336 304 41 5 chr3 117721132 117721568 -41878215 + Lx8 LINE L1 6925 7376 -97 3 1483 230 132 0 0 chr3 117721590 117721628 -41878155 + Lx8 LINE L1 7431 7468 -5 3 1483 420 164 0 0 chr3 117722181 117722291 -41877492 + (CA)n Simple_repeat Simple_repeat 2 111 0 3 1483 294 29 0 0 chr3 117722291 117722326 -41877457 + (TA)n Simple_repeat Simple_repeat 1 35 0 3 1483 314 314 131 47 chr3 117722529 117722803 -41876980 + L1ME2 LINE L1 5659 5955 -209 3 1483 247 333 0 0 chr3 117722853 117722952 -41876831 + L1ME2 LINE L1 6026 6124 -40 3 1483 374 201 42 0 chr3 117722952 117723033 -41876750 + PB1D10 SINE Alu 30 120 -7 3 1483 6170 118 34 10 chr3 117723033 117724727 -41875056 + Lx LINE L1 4838 6575 -79 3 1483 366 121 15 0 chr3 117724876 117724942 -41874841 + Lx2 LINE L1 6928 6994 -3 3 1483 311 284 0 47 chr3 117725619 117725726 -41874057 - LFSINE_Vert SINE SINE -172 287 186 3 1483 450 0 0 0 chr3 117726152 117726202 -41873581 + (TC)n Simple_repeat Simple_repeat 2 51 0 3 1483 330 115 0 0 chr3 117726202 117726253 -41873530 + (TG)n Simple_repeat Simple_repeat 1 52 0 3 1483 393 330 105 38 chr3 117727270 117727613 -41872170 + MLT1J-int LTR MaLR 88 453 -934 3 1483 628 315 77 55 chr3 117728009 117728053 -41871730 - B4 SINE B4 -21 271 228 3 1483 199 0 31 31 chr3 117728053 117728085 -41871698 + (TTG)n Simple_repeat Simple_repeat 2 33 0 3 1483 628 315 77 55 chr3 117728085 117728275 -41871508 - B4 SINE B4 -65 227 32 3 1483 1058 273 26 32 chr3 117728275 117728619 -41871164 + RLTR15 LTR ERVK 1 342 -17 3 1483 22 0 0 0 chr3 117729579 117729601 -41870182 + AT_rich Low_complexity Low_complexity 1 22 0 3 1483 288 0 0 0 chr3 117731206 117731238 -41868545 + (CA)n Simple_repeat Simple_repeat 1 32 0 3 1483 189 107 0 0 chr3 117731394 117731422 -41868361 + (TG)n Simple_repeat Simple_repeat 1 28 0 3 1483 231 152 0 0 chr3 117731422 117731468 -41868315 + GA-rich Low_complexity Low_complexity 2 47 0 3 1483 420 297 114 53 chr3 117731599 117731862 -41867921 - MER90 LTR ERV1 -135 440 162 3 1483 228 277 58 46 chr3 117731970 117732057 -41867726 - MER90 LTR ERV1 -421 193 106 3 1483 486 239 5 64 chr3 117732058 117732256 -41867527 - Lx7 LINE L1 -4 7692 7532 4 1483 2480 127 50 12 chr3 117733194 117733615 -41866168 - Lx LINE L1 -19 6635 6199 4 1483 260 179 36 0 chr3 117733750 117733806 -41865977 + Lx9 LINE L1 7235 7292 -352 4 1483 36 0 0 0 chr3 117733827 117733863 -41865920 + AT_rich Low_complexity Low_complexity 1 36 0 4 1483 1371 212 198 15 chr3 117733863 117733969 -41865814 - Lx9 LINE L1 -7 7637 7520 4 1483 378 0 0 0 chr3 117733969 117734011 -41865772 + (CA)n Simple_repeat Simple_repeat 2 43 0 4 1483 1371 212 198 15 chr3 117734011 117734369 -41865414 - Lx9 LINE L1 -125 7519 7089 4 1483 1346 204 57 22 chr3 117734384 117734750 -41865033 + Lx9 LINE L1 6685 7063 -581 4 1483 423 0 0 0 chr3 117735503 117735550 -41864233 + (TCTA)n Simple_repeat Simple_repeat 4 50 0 4 1483 226 338 0 0 chr3 117735662 117735730 -41864053 - RMER15 LTR ERVL -105 470 403 4 1483 484 347 23 88 chr3 117735740 117735971 -41863812 - Lx8 LINE L1 -237 7236 7020 4 1483 1156 48 7 7 chr3 117735971 117736117 -41863666 + B1_Mus2 SINE Alu 2 147 0 4 1483 484 347 23 88 chr3 117736117 117736239 -41863544 - Lx8 LINE L1 -454 7019 6906 4 1483 392 295 95 50 chr3 117736957 117737157 -41862626 - MIRb SINE MIR -17 251 43 4 1483 483 62 38 0 chr3 117738363 117738443 -41861340 + (CA)n Simple_repeat Simple_repeat 2 84 0 4 1483 501 288 61 77 chr3 117738534 117738861 -41860922 - L1M2 LINE L1 -2708 3435 3114 4 1483 235 308 77 0 chr3 117738892 117739022 -41860761 + L1M3 LINE L1 5420 5559 -609 4 1483 425 290 106 53 chr3 117739240 117739582 -41860201 + RLTR16 LTR ERVK 32 450 -242 4 1483 889 271 48 72 chr3 117739960 117740250 -41859533 + MTD LTR MaLR 22 306 -94 4 1483 425 296 34 6 chr3 117740253 117740430 -41859353 - L1MC3 LINE L1 -1053 6732 6551 4 1483 24 53 0 0 chr3 117740871 117740909 -41858874 + AT_rich Low_complexity Low_complexity 1 38 0 4 1483 303 96 0 0 chr3 117740947 117740999 -41858784 + (CAGT)n Simple_repeat Simple_repeat 4 55 0 4 1483 1388 39 22 0 chr3 117742186 117742364 -41857419 - L1Md_F2 LINE L1 -2 6580 6399 4 1483 2163 130 6 36 chr3 117742617 117742976 -41856807 + Lx2 LINE L1 6646 6993 -4 4 1483 204 40 0 0 chr3 117742976 117743001 -41856782 + (TAAAA)n Simple_repeat Simple_repeat 2 26 0 4 1483 231 301 0 27 chr3 117744497 117744572 -41855211 + ID4_ SINE ID 4 76 -7 4 1483 1884 174 35 11 chr3 117744882 117745249 -41854534 + Lx LINE L1 6278 6653 -1 4 1483 4603 86 27 14 chr3 117745391 117746190 -41853593 - Lx3_Mus LINE L1 -682 6327 5535 4 1483 5134 71 5 0 chr3 117746190 117746856 -41852927 + Lx3_Mus LINE L1 6341 7009 0 4 1483 531 0 0 0 chr3 117746975 117747034 -41852749 + (CAATA)n Simple_repeat Simple_repeat 2 60 0 4 1483 234 91 0 0 chr3 117747773 117747806 -41851977 + (T)n Simple_repeat Simple_repeat 1 33 0 4 1483 561 76 0 0 chr3 117749134 117749213 -41850570 + (TTTC)n Simple_repeat Simple_repeat 2 80 0 4 1483 418 227 0 10 chr3 117750691 117750789 -41848994 + Lx8 LINE L1 7141 7237 -236 4 1483 254 307 11 54 chr3 117751453 117751546 -41848237 - MER58A DNA MER1_type -110 114 26 4 1483 21 36 0 0 chr3 117751717 117751745 -41848038 + AT_rich Low_complexity Low_complexity 1 28 0 4 1483 199 133 44 0 chr3 117751756 117751801 -41847982 + (TTG)n Simple_repeat Simple_repeat 2 48 0 4 1483 717 196 0 63 chr3 117751804 117751962 -41847821 - B1_Mur3 SINE Alu -1 148 1 4 1483 266 314 97 36 chr3 117754928 117755123 -41844660 + B4A SINE B4 86 292 0 4 1483 19081 45 0 0 chr3 117757971 117760478 -41839305 - L1Md_T LINE L1 -1759 4124 1618 4 1483 12226 21 0 0 chr3 117760478 117761966 -41837817 + L1Md_T LINE L1 4099 5586 -297 4 1483 8699 6 20 0 chr3 117761966 117762942 -41836841 + L1Md_T LINE L1 5587 6582 0 4 1483 1900 214 241 17 chr3 117763241 117763927 -41835856 + Lx9 LINE L1 6576 7414 -230 4 1483 243 61 0 0 chr3 117763935 117763968 -41835815 + (CAAA)n Simple_repeat Simple_repeat 3 35 0 4 1483 275 214 29 39 chr3 117763968 117764070 -41835713 + Lx9 LINE L1 7537 7637 -7 4 1483 180 0 0 0 chr3 117764095 117764115 -41835668 + (TTTG)n Simple_repeat Simple_repeat 4 23 0 4 1483 471 141 0 0 chr3 117764635 117764713 -41835070 + (TTCC)n Simple_repeat Simple_repeat 3 80 0 4 1483 1010 128 0 0 chr3 117764714 117764862 -41834921 - B1_Mus1 SINE Alu 0 148 1 4 1483 524 266 0 0 chr3 117765140 117765268 -41834515 + Lx9 LINE L1 7196 7323 -321 4 1483 364 321 104 74 chr3 117765574 117765776 -41834007 + B3 SINE B2 7 214 -2 4 1483 212 331 135 23 chr3 117766021 117766154 -41833629 + MIRc SINE MIR 121 268 0 4 1483 34 0 0 0 chr3 117767628 117767662 -41832121 + AT_rich Low_complexity Low_complexity 1 34 0 4 1483 2037 25 0 0 chr3 117768120 117768358 -41831425 + L1Md_F2 LINE L1 6333 6570 -12 4 1483 229 184 182 11 chr3 117768411 117768499 -41831284 - Lx9 LINE L1 -1 7643 7541 4 1483 1223 170 4 22 chr3 117768752 117768981 -41830802 - URR1B DNA MER1_type 0 225 1 4 1483 186 43 0 0 chr3 117769294 117769317 -41830466 + (TGG)n Simple_repeat Simple_repeat 1 23 0 4 1483 22 0 0 0 chr3 117770084 117770106 -41829677 + AT_rich Low_complexity Low_complexity 1 22 0 4 1483 2442 191 54 24 chr3 117770555 117771106 -41828677 + Lx2B LINE L1 6433 7000 0 4 1483 207 0 0 0 chr3 117771797 117771820 -41827963 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 4 1483 234 356 14 43 chr3 117771852 117771990 -41827793 - MER5B DNA MER1_type -44 134 1 4 1483 317 24 0 23 chr3 117772529 117772572 -41827211 + (CAAA)n Simple_repeat Simple_repeat 4 45 0 4 1483 677 212 7 10 chr3 117772639 117772946 -41826837 + (TG)n Simple_repeat Simple_repeat 1 305 0 4 1483 387 127 0 0 chr3 117772967 117773030 -41826753 + (TATG)n Simple_repeat Simple_repeat 2 64 0 4 1483 826 284 52 99 chr3 117773817 117774417 -41825366 + MT2B LTR ERVL 1 544 -40 4 1483 2205 166 22 93 chr3 117774616 117775219 -41824564 - RLTR31_Mm LTR ERVK 0 561 2 4 1483 191 36 36 0 chr3 117775663 117775691 -41824092 + (CAA)n Simple_repeat Simple_repeat 2 30 0 4 1483 549 340 31 17 chr3 117776151 117776438 -41823345 - B4A SINE B4 0 292 2 4 1483 631 335 33 55 chr3 117776483 117776790 -41822993 + MLT2B2 LTR ERVL 13 312 -203 4 1483 2088 156 4 118 chr3 117776893 117777125 -41822658 - MTB_Mm LTR MaLR 0 407 181 4 1483 449 17 17 0 chr3 117777125 117777183 -41822600 + (TTAA)n Simple_repeat Simple_repeat 2 60 0 4 1483 2088 156 4 118 chr3 117777183 117777409 -41822374 - MTB_Mm LTR MaLR -227 180 1 4 1483 1184 207 9 0 chr3 117777606 117777819 -41821964 + MTC LTR MaLR 124 338 -83 4 1483 198 179 0 0 chr3 117779069 117779125 -41820658 + CT-rich Low_complexity Low_complexity 1 56 0 4 1483 415 324 67 45 chr3 117780347 117780645 -41819138 + B4 SINE B4 6 282 -10 4 1483 221 193 35 0 chr3 117780646 117780703 -41819080 + (CA)n Simple_repeat Simple_repeat 1 59 0 4 1483 480 184 65 13 chr3 117780724 117780858 -41818925 - Lx9 LINE L1 0 7644 7502 4 1483 1062 221 149 80 chr3 117780858 117781207 -41818576 - ORR1D1 LTR MaLR 0 374 2 4 1483 480 184 65 13 chr3 117781207 117781226 -41818557 - Lx9 LINE L1 -143 7501 7483 4 1483 646 242 5 108 chr3 117781248 117781452 -41818331 + Lx9 LINE L1 7220 7402 -242 4 1483 489 297 94 7 chr3 117782469 117782618 -41817165 - B3A SINE B2 -36 162 1 4 1483 1552 279 33 50 chr3 117783036 117783518 -41816265 + Lx5 LINE L1 6559 7032 -18 4 1483 290 45 23 0 chr3 117783548 117783592 -41816191 + (CAA)n Simple_repeat Simple_repeat 1 45 0 4 1483 329 291 83 33 chr3 117783614 117783735 -41816048 + RSINE1 SINE B4 11 137 -28 4 1483 369 0 0 0 chr3 117783746 117783787 -41815996 + (CA)n Simple_repeat Simple_repeat 1 41 0 4 1483 403 295 98 8 chr3 117785095 117785218 -41814565 - ID_B1 SINE B4 -4 220 87 4 1483 733 141 0 8 chr3 117785350 117785472 -41814311 - B1_Mus1 SINE Alu -4 144 24 4 1483 1006 261 72 23 chr3 117785548 117785875 -41813908 + ORR1E LTR MaLR 1 353 -6 4 1483 279 309 37 56 chr3 117786122 117786283 -41813500 - MER53 DNA hAT -32 161 4 4 1483 200 227 0 0 chr3 117786852 117786896 -41812887 + (TATATG)n Simple_repeat Simple_repeat 4 47 0 4 1483 294 117 42 49 chr3 117789317 117789461 -41810322 + (TATAA)n Simple_repeat Simple_repeat 2 144 0 4 1483 393 103 0 0 chr3 117789532 117789590 -41810193 - ORR1D1 LTR MaLR -8 366 309 4 1483 3497 108 41 63 chr3 117792054 117792638 -41807145 - Lx2 LINE L1 0 6997 6427 4 1483 2767 121 5 0 chr3 117792641 117793071 -41806712 + Lx2 LINE L1 5973 6404 -593 4 1483 615 321 54 22 chr3 117793267 117793544 -41806239 + B4A SINE B4 1 286 -6 4 1483 1147 208 88 60 chr3 117793642 117793778 -41806005 + ORR1C2 LTR MaLR 1 137 -247 4 1483 222 37 0 0 chr3 117793778 117793805 -41805978 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 4 1483 1132 83 0 0 chr3 117793805 117793949 -41805834 - B1_Mus1 SINE Alu -3 145 2 4 1483 1147 221 92 61 chr3 117793949 117794155 -41805628 + ORR1C2 LTR MaLR 82 325 -59 4 1483 426 69 0 0 chr3 117794155 117794213 -41805570 + (TC)n Simple_repeat Simple_repeat 1 58 0 4 1483 180 0 0 0 chr3 117794213 117794233 -41805550 + (TG)n Simple_repeat Simple_repeat 1 20 0 4 1483 531 307 47 24 chr3 117794240 117794410 -41805373 - B3A SINE B2 -24 174 1 4 1483 360 375 90 21 chr3 117794689 117794923 -41804860 - MLT1J LTR MaLR -156 356 107 4 1483 378 0 0 0 chr3 117795383 117795425 -41804358 + (TG)n Simple_repeat Simple_repeat 2 43 0 4 1483 337 325 0 0 chr3 117795486 117795563 -41804220 - B1_Mur4 SINE Alu -65 85 9 4 1483 667 277 166 20 chr3 117795559 117795758 -41804025 - B4A SINE B4 -64 228 1 4 1483 355 348 99 66 chr3 117795758 117796110 -41803673 + LTR79 LTR ERVL 31 394 -133 4 1483 227 282 186 8 chr3 117796281 117796399 -41803384 - MIRb SINE MIR -9 259 121 4 1483 288 0 0 0 chr3 117796505 117796537 -41803246 + (CATATA)n Simple_repeat Simple_repeat 5 36 0 4 1483 180 304 0 0 chr3 117799341 117799397 -41800386 - MIRb SINE MIR -36 232 177 4 1483 346 310 182 11 chr3 117800136 117800312 -41799471 - B4A SINE B4 0 292 87 4 1483 417 353 17 0 chr3 117801913 117802032 -41797751 + RSINE1 SINE B4 28 148 -17 4 1483 183 267 77 55 chr3 117803510 117803601 -41796182 - L3 LINE CR1 -3641 848 756 4 1483 597 330 49 22 chr3 117804739 117804965 -41794818 + B4A SINE B4 1 232 -60 5 1483 747 173 0 0 chr3 117805075 117805248 -41794535 + GA-rich Low_complexity Low_complexity 2 174 0 5 1483 351 0 0 0 chr3 117805253 117805292 -41794491 + (CAGA)n Simple_repeat Simple_repeat 2 40 0 5 1483 4002 52 0 31 chr3 117806195 117806712 -41793071 - L1Md_F2 LINE L1 -12 6570 6070 5 1483 2814 52 0 0 chr3 117806712 117807080 -41792703 + L1_Mm LINE L1 2435 2802 -3081 5 1483 36979 4 0 0 chr3 117807767 117813148 -41786635 + L1Md_A LINE L1 205 5586 -297 5 1483 9025 4 0 0 chr3 117813148 117814144 -41785639 + L1Md_A LINE L1 5587 6582 0 5 1483 225 65 0 0 chr3 117814421 117814452 -41785331 + (GAATG)n Simple_repeat Simple_repeat 3 33 0 5 1483 665 190 27 34 chr3 117814811 117814958 -41784825 + B1_Mus1 SINE Alu 3 148 0 5 1483 656 56 11 0 chr3 117814965 117815054 -41784729 + (GGAA)n Simple_repeat Simple_repeat 2 91 0 5 1483 1270 286 28 14 chr3 117815216 117815574 -41784209 + MTE2b LTR MaLR 3 365 -14 5 1483 257 89 22 0 chr3 117815694 117815739 -41784044 + (TAA)n Simple_repeat Simple_repeat 1 46 0 5 1483 212 0 36 0 chr3 117815793 117815821 -41783962 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 5 1483 253 235 28 42 chr3 117816103 117816174 -41783609 + MIRc SINE MIR 27 96 -172 5 1483 828 134 97 0 chr3 117816563 117816697 -41783086 + B1_Mus1 SINE Alu 2 148 0 5 1483 363 384 24 0 chr3 117817488 117817613 -41782170 - RSINE1 SINE B4 -26 139 12 5 1483 745 251 50 6 chr3 117819104 117819284 -41780499 - B3 SINE B2 -1 215 28 5 1483 564 312 50 0 chr3 117819460 117819662 -41780121 + MER2 DNA MER2_type 90 301 -44 5 1483 243 0 0 0 chr3 117819676 117819703 -41780080 + (A)n Simple_repeat Simple_repeat 1 27 0 5 1483 932 299 46 76 chr3 117820088 117820182 -41779601 + MTE2a LTR MaLR 17 107 -272 5 1483 189 0 0 0 chr3 117820182 117820203 -41779580 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 5 1483 932 299 46 76 chr3 117820203 117820477 -41779306 + MTE2a LTR MaLR 108 374 -5 5 1483 295 333 0 13 chr3 117821847 117821926 -41777857 - ID4 SINE ID 0 83 6 5 1483 359 379 58 0 chr3 117822096 117822286 -41777497 + MIRb SINE MIR 42 242 -26 5 1483 5848 148 62 41 chr3 117822758 117823825 -41775958 + RLTR13D3 LTR ERVK 3 1091 -23 5 1483 285 187 239 82 chr3 117823912 117824046 -41775737 - RMER15 LTR ERVL -96 479 325 5 1483 272 267 45 162 chr3 117824054 117824233 -41775550 - RMER15 LTR ERVL -415 160 3 5 1483 1757 245 24 82 chr3 117824436 117824938 -41774845 + RMER19C LTR ERVK 139 611 0 5 1483 246 32 0 0 chr3 117825019 117825050 -41774733 + (TTAA)n Simple_repeat Simple_repeat 2 32 0 5 1483 3510 175 117 6 chr3 117825071 117826017 -41773766 - Lx4B LINE L1 -39 7019 5934 5 1483 4011 157 46 19 chr3 117826017 117826269 -41773514 + Lx5 LINE L1 5076 5324 -553 5 1483 1477 109 4 34 chr3 117826269 117826320 -41773463 - Lx LINE L1 -1 6653 6608 5 1483 3174 56 2 5 chr3 117826320 117826717 -41773066 + MTA_Mm LTR MaLR 1 396 0 5 1483 1477 109 4 34 chr3 117826717 117826903 -41772880 - Lx LINE L1 -47 6607 6423 5 1483 4011 160 43 18 chr3 117826903 117827474 -41772309 + Lx5 LINE L1 5325 5926 -1124 5 1483 521 341 70 32 chr3 117827477 117827819 -41771964 - MLT1C LTR MaLR -71 396 42 5 1483 530 274 116 13 chr3 117827854 117827967 -41771816 + L1MA6 LINE L1 5798 5913 -387 5 1483 288 0 0 0 chr3 117827967 117827999 -41771784 + (CATA)n Simple_repeat Simple_repeat 3 34 0 5 1483 530 274 116 13 chr3 117827999 117828195 -41771588 + L1MA6 LINE L1 5914 6139 -161 5 1483 321 26 0 0 chr3 117828385 117828423 -41771360 + (TG)n Simple_repeat Simple_repeat 2 39 0 5 1483 342 0 0 0 chr3 117828687 117828725 -41771058 + (A)n Simple_repeat Simple_repeat 1 38 0 5 1483 183 156 0 0 chr3 117830341 117830373 -41769410 + GA-rich Low_complexity Low_complexity 2 33 0 5 1483 422 120 0 13 chr3 117830375 117830451 -41769332 + (GA)n Simple_repeat Simple_repeat 1 75 0 5 1483 281 135 19 0 chr3 117830766 117830818 -41768965 + (CA)n Simple_repeat Simple_repeat 1 53 0 5 1483 626 336 85 5 chr3 117830819 117831052 -41768731 - B4A SINE B4 -7 285 32 5 1483 7349 48 8 1 chr3 117831085 117831972 -41767811 + RLTR13B1 LTR ERVK 1 893 0 5 1483 2322 113 30 6 chr3 117832759 117833123 -41766660 - Lx LINE L1 0 6654 6282 5 1483 293 306 36 54 chr3 117833211 117833303 -41766480 - Lx9 LINE L1 -44 7600 7512 5 1483 444 118 0 0 chr3 117833303 117833371 -41766412 + (TA)n Simple_repeat Simple_repeat 2 69 0 5 1483 293 306 36 54 chr3 117833371 117833499 -41766284 - Lx9 LINE L1 -133 7511 7385 5 185 508 325 19 10 chr3 117833528 117833736 -41766047 + Lx9 LINE L1 7222 7431 -213 5 1484 330 291 101 17 chr3 117833757 117833876 -41765907 - B4 SINE B4 -73 219 91 5 1484 190 0 32 32 chr3 117833889 117833920 -41765863 + (TTTTA)n Simple_repeat Simple_repeat 4 34 0 5 1484 528 16 0 0 chr3 117834219 117834280 -41765503 + (CAAAA)n Simple_repeat Simple_repeat 2 62 0 5 1484 566 273 56 46 chr3 117835397 117835845 -41763938 - RMER17B LTR ERVK -9 899 429 5 1484 361 280 140 21 chr3 117836756 117836949 -41762834 - Lx8 LINE L1 -5 7468 7253 5 1484 315 0 0 0 chr3 117837526 117837561 -41762222 + (A)n Simple_repeat Simple_repeat 1 35 0 5 1484 881 169 0 11 chr3 117837738 117837918 -41761865 + GA-rich Low_complexity Low_complexity 2 179 0 5 1484 234 0 0 0 chr3 117837918 117837968 -41761815 + (GGAA)n Simple_repeat Simple_repeat 1 50 0 5 1484 257 276 0 17 chr3 117838919 117838978 -41760805 + PB1D10 SINE Alu 23 80 -37 5 1484 261 0 0 0 chr3 117839099 117839128 -41760655 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 5 1484 3223 166 46 11 chr3 117839453 117840327 -41759456 - Lx4B LINE L1 -807 6251 5336 5 1484 545 186 9 17 chr3 117840308 117840423 -41759360 - Lx4B LINE L1 -749 5137 5024 5 1484 30 0 0 0 chr3 117840449 117840479 -41759304 + AT_rich Low_complexity Low_complexity 1 30 0 5 1484 672 311 16 5 chr3 117840701 117840885 -41758898 + B3A SINE B2 2 187 -11 5 1484 249 354 95 19 chr3 117840887 117841097 -41758686 - L1MC1 LINE L1 -16 6317 6092 5 1484 299 269 122 33 chr3 117841144 117841325 -41758458 - L1MC1 LINE L1 -411 5922 5726 5 1484 468 320 70 10 chr3 117841340 117841652 -41758131 - L1MC1 LINE L1 -1317 4829 4499 5 1484 1605 103 161 0 chr3 117841722 117841995 -41757788 - Lx3_Mus LINE L1 -1 7008 6692 5 1484 357 24 0 0 chr3 117845102 117845144 -41754639 + (TG)n Simple_repeat Simple_repeat 2 43 0 5 1484 755 242 62 6 chr3 117846915 117847077 -41752706 + B3A SINE B2 1 171 -27 5 1484 322 285 55 31 chr3 117847946 117848073 -41751710 - MIRb SINE MIR -119 149 20 5 1484 260 347 0 0 chr3 117849031 117849106 -41750677 - ID4_ SINE ID 0 83 9 5 1484 510 17 0 0 chr3 117849335 117849394 -41750389 + (TAG)n Simple_repeat Simple_repeat 1 59 0 5 1484 218 241 112 12 chr3 117849394 117849474 -41750309 - PB1D10 SINE Alu -7 110 23 5 1484 212 103 51 0 chr3 117850195 117850234 -41749549 + GA-rich Low_complexity Low_complexity 1 41 0 5 1484 270 180 0 0 chr3 117850441 117850502 -41749281 + CT-rich Low_complexity Low_complexity 2 62 0 5 1484 705 34 0 0 chr3 117850514 117850602 -41749181 + (GA)n Simple_repeat Simple_repeat 2 89 0 5 1484 7917 54 2 9 chr3 117850763 117852452 -41747331 - L1Md_F2 LINE L1 -12 6570 4894 5 1484 387 0 0 0 chr3 117852700 117852743 -41747040 + (CA)n Simple_repeat Simple_repeat 2 44 0 5 1484 507 17 0 0 chr3 117852743 117852802 -41746981 + (GA)n Simple_repeat Simple_repeat 2 61 0 5 1484 756 297 264 40 chr3 117852807 117853308 -41746475 - Lx9 LINE L1 -235 7409 6797 5 1484 5854 36 0 0 chr3 117853324 117854014 -41745769 - L1Md_F2 LINE L1 -13 6569 5880 5 1484 21 0 0 0 chr3 117854221 117854242 -41745541 + AT_rich Low_complexity Low_complexity 1 21 0 5 1484 436 338 38 56 chr3 117854545 117854705 -41745078 - RSINE1 SINE B4 -8 157 1 5 1484 423 0 0 0 chr3 117854857 117854904 -41744879 + (CAA)n Simple_repeat Simple_repeat 1 47 0 5 1484 21 71 0 0 chr3 117855653 117855695 -41744088 + AT_rich Low_complexity Low_complexity 1 42 0 5 1484 401 219 31 82 chr3 117855740 117855899 -41743884 + HAL1 LINE L1 2077 2227 -280 5 1484 1065 289 96 58 chr3 117856312 117856448 -41743335 + Charlie1 DNA MER1_type 92 219 -2562 5 1484 489 220 180 6 chr3 117856448 117856631 -41743152 - B3 SINE B2 0 216 2 5 1484 1065 289 96 58 chr3 117856631 117857067 -41742716 + Charlie1 DNA MER1_type 220 686 -2095 5 1484 252 167 0 0 chr3 117857131 117857179 -41742604 + (CA)n Simple_repeat Simple_repeat 1 48 0 5 1484 667 292 119 50 chr3 117857380 117857817 -41741966 + Charlie1 DNA MER1_type 775 1241 -1540 5 1484 341 120 0 26 chr3 117858332 117858409 -41741374 - Lx LINE L1 0 6654 6580 5 1484 1544 276 104 23 chr3 117858447 117858626 -41741157 + Charlie1 DNA MER1_type 1675 1880 -901 5 1484 423 0 0 0 chr3 117858626 117858673 -41741110 + (TA)n Simple_repeat Simple_repeat 1 47 0 5 1484 1544 276 104 23 chr3 117858673 117859106 -41740677 + Charlie1 DNA MER1_type 1881 2336 -445 5 1484 930 151 8 190 chr3 117859119 117859372 -41740411 + RMER1C Other Other 1121 1327 -15 5 1484 201 121 0 0 chr3 117859510 117859543 -41740240 + (TTA)n Simple_repeat Simple_repeat 1 33 0 5 1484 186 43 0 0 chr3 117859572 117859595 -41740188 + (TA)n Simple_repeat Simple_repeat 2 24 0 5 1484 408 20 0 0 chr3 117859595 117859643 -41740140 + (TG)n Simple_repeat Simple_repeat 2 50 0 5 1484 310 270 0 16 chr3 117859654 117859718 -41740065 - RSINE1 SINE B4 -20 145 83 5 1484 347 385 15 15 chr3 117859861 117860059 -41739724 + Tigger5 DNA MER2_type 39 236 -2170 5 1484 360 353 8 0 chr3 117860056 117860175 -41739608 + Tigger5 DNA MER2_type 2287 2406 0 5 1484 317 192 243 46 chr3 117860236 117860454 -41739329 + Charlie1 DNA MER1_type 2510 2770 -11 5 1484 730 309 42 19 chr3 117860525 117860739 -41739044 - B4 SINE B4 -1 291 73 5 1484 339 167 0 0 chr3 117860740 117860830 -41738953 + CT-rich Low_complexity Low_complexity 1 90 0 5 1484 356 21 42 0 chr3 117861203 117861251 -41738532 + (CAAAA)n Simple_repeat Simple_repeat 1 50 0 5 1484 961 248 10 0 chr3 117861745 117861951 -41737832 + B3 SINE B2 2 209 -7 5 1484 733 297 31 22 chr3 117862050 117862274 -41737509 + B4A SINE B4 3 228 -64 5 1484 723 124 0 0 chr3 117862836 117862981 -41736802 + (CA)n Simple_repeat Simple_repeat 1 145 0 5 1484 285 29 0 0 chr3 117863272 117863306 -41736477 + (CAAA)n Simple_repeat Simple_repeat 3 36 0 5 1484 525 106 44 9 chr3 117864310 117864424 -41735359 + CT-rich Low_complexity Low_complexity 2 119 0 5 1484 231 167 40 40 chr3 117865084 117865159 -41734624 + GA-rich Low_complexity Low_complexity 2 76 0 5 1484 341 323 20 29 chr3 117866245 117866347 -41733436 - PB1D10 SINE Alu -8 109 9 5 1484 337 276 39 16 chr3 117866853 117866982 -41732801 + L1MA4 LINE L1 5886 6017 -283 5 1484 532 346 26 33 chr3 117867102 117867407 -41732376 - Lx8 LINE L1 -1 7472 7170 6 1484 192 224 20 10 chr3 117868065 117868164 -41731619 + (TAGA)n Simple_repeat Simple_repeat 2 101 0 6 1484 429 20 0 0 chr3 117868508 117868558 -41731225 + (TG)n Simple_repeat Simple_repeat 2 51 0 6 1484 201 333 76 15 chr3 117870232 117870363 -41729420 + MIRc SINE MIR 5 143 -125 6 1484 387 0 0 0 chr3 117870468 117870511 -41729272 + (TC)n Simple_repeat Simple_repeat 2 44 0 6 1484 426 20 0 0 chr3 117870511 117870561 -41729222 + (TG)n Simple_repeat Simple_repeat 2 52 0 6 1484 330 115 0 0 chr3 117871048 117871100 -41728683 - L1Md_F2 LINE L1 -12 6570 6519 6 1484 31 0 0 0 chr3 117871100 117871131 -41728652 + AT_rich Low_complexity Low_complexity 1 31 0 6 1484 1231 27 0 0 chr3 117872165 117872311 -41727472 + B1_Mus2 SINE Alu 2 147 0 6 1484 201 74 0 0 chr3 117872311 117872338 -41727445 + (A)n Simple_repeat Simple_repeat 1 27 0 6 1484 424 331 56 17 chr3 117872764 117872942 -41726841 + B4A SINE B4 95 279 -13 6 1484 237 98 0 0 chr3 117873986 117874027 -41725756 + (TTTA)n Simple_repeat Simple_repeat 3 43 0 6 1484 279 320 73 0 chr3 117874772 117874958 -41724825 - L1M2 LINE L1 -868 5275 5070 6 1484 777 309 83 7 chr3 117874945 117875420 -41724363 + L1M2 LINE L1 4537 5050 -1096 6 1484 3588 92 13 8 chr3 117876396 117876922 -41722861 - Lx LINE L1 0 6654 6126 6 1484 371 312 20 102 chr3 117877187 117877433 -41722350 + L1ME4a LINE L1 5737 5962 -162 6 1484 405 58 0 0 chr3 117878019 117878071 -41721712 + (TAA)n Simple_repeat Simple_repeat 3 54 0 6 1484 198 176 0 0 chr3 117878440 117878491 -41721292 + (TA)n Simple_repeat Simple_repeat 2 52 0 6 1484 551 27 14 0 chr3 117878539 117878612 -41721171 + (TAGA)n Simple_repeat Simple_repeat 2 75 0 6 1484 403 272 43 91 chr3 117879615 117879645 -41720138 - B2_Mm2 SINE B2 -9 186 157 6 1484 456 67 0 0 chr3 117879645 117879705 -41720078 + (TG)n Simple_repeat Simple_repeat 1 60 0 6 1484 641 272 43 91 chr3 117879705 117879860 -41719923 - B3A SINE B2 -39 156 10 6 1484 4645 227 154 44 chr3 117880079 117881437 -41718346 + Lx7 LINE L1 6190 7696 0 6 1484 228 67 0 0 chr3 117882112 117882142 -41717641 + (T)n Simple_repeat Simple_repeat 1 30 0 6 1484 40727 12 0 6 chr3 117882258 117888463 -41711320 - L1Md_A LINE L1 -1 6581 418 6 1484 418 17 34 0 chr3 117888572 117888631 -41711152 + (TAGA)n Simple_repeat Simple_repeat 2 62 0 6 1484 21 36 0 0 chr3 117888689 117888717 -41711066 + AT_rich Low_complexity Low_complexity 1 28 0 6 1484 441 0 0 0 chr3 117888971 117889020 -41710763 + (A)n Simple_repeat Simple_repeat 1 49 0 6 1484 282 302 92 27 chr3 117889035 117889219 -41710564 - Charlie7 DNA MER1_type -2334 278 83 6 1484 208 325 84 36 chr3 117889279 117889362 -41710421 + L2c LINE L2 3260 3346 -41 6 1484 621 27 0 0 chr3 117890137 117890212 -41709571 + (GAA)n Simple_repeat Simple_repeat 2 76 0 6 1484 1021 241 19 0 chr3 117890746 117890958 -41708825 - URR1B DNA MER1_type -8 217 2 6 1484 295 261 43 0 chr3 117891212 117891304 -41708479 + RMER15 LTR ERVL 403 498 -77 6 1484 233 389 19 65 chr3 117891981 117892135 -41707648 - LTR33B LTR ERVL -321 182 36 6 1484 328 333 62 76 chr3 117892224 117892448 -41707335 + LTR84a LTR ERVL 6 226 -531 6 1484 330 333 70 55 chr3 117892826 117893026 -41706757 + MIR SINE MIR 21 223 -39 6 1484 225 196 0 0 chr3 117895078 117895124 -41704659 + (TA)n Simple_repeat Simple_repeat 2 47 0 6 1484 239 284 11 22 chr3 117895202 117895292 -41704491 - L1M5 LINE L1 -471 5653 5565 6 1484 483 48 0 0 chr3 117895929 117895991 -41703792 + (TAGA)n Simple_repeat Simple_repeat 4 65 0 6 1484 754 238 130 44 chr3 117897748 117898087 -41701696 + RLTR9A LTR ERVK 1 368 0 6 1484 373 333 27 9 chr3 117898380 117898492 -41701291 + RSINE1 SINE B4 1 114 -51 6 1484 727 300 77 16 chr3 117898559 117898806 -41700977 + B4A SINE B4 1 262 -30 6 1484 956 322 49 46 chr3 117898854 117899307 -41700476 + Lx8 LINE L1 7019 7472 -1 6 1484 246 278 51 89 chr3 117899318 117899397 -41700386 + B4A SINE B4 217 292 0 6 1484 22 35 0 0 chr3 117899410 117899439 -41700344 + AT_rich Low_complexity Low_complexity 1 29 0 6 1484 378 57 0 0 chr3 117899948 117900001 -41699782 + (CA)n Simple_repeat Simple_repeat 1 53 0 6 1484 2764 204 16 78 chr3 117900445 117901153 -41698630 + Lx4B LINE L1 6391 7054 -4 6 1484 21 36 0 0 chr3 117903392 117903420 -41696363 + AT_rich Low_complexity Low_complexity 1 28 0 6 1484 300 53 0 0 chr3 117904030 117904068 -41695715 + (A)n Simple_repeat Simple_repeat 1 38 0 6 1484 198 0 0 0 chr3 117904569 117904591 -41695192 + (TA)n Simple_repeat Simple_repeat 2 23 0 6 1484 3472 54 9 2 chr3 117905822 117906269 -41693514 + L1Md_F3 LINE L1 6135 6584 0 6 1484 389 70 18 0 chr3 117906555 117906612 -41693171 + (CCCCCT)n Simple_repeat Simple_repeat 5 62 0 6 1484 508 299 114 58 chr3 117907058 117907119 -41692664 - MTEa LTR MaLR 0 379 309 6 1484 531 0 0 0 chr3 117907119 117907178 -41692605 + (TTTTC)n Simple_repeat Simple_repeat 1 59 0 6 1484 1115 101 0 6 chr3 117907179 117907348 -41692435 + (TTTC)n Simple_repeat Simple_repeat 1 168 0 6 1484 508 299 114 58 chr3 117907348 117907643 -41692140 - MTEa LTR MaLR -71 308 4 6 1484 746 188 95 18 chr3 117907757 117907925 -41691858 + Lx5 LINE L1 6289 6469 -581 6 1484 258 300 58 26 chr3 117908180 117908334 -41691449 + L1MD LINE L1 2225 2383 -3763 6 1484 515 291 0 0 chr3 117908335 117908445 -41691338 + B3A SINE B2 3 112 -86 6 1484 247 345 55 10 chr3 117908538 117908737 -41691046 + L1M5 LINE L1 2397 2604 -3542 6 1484 612 285 77 101 chr3 117908925 117909222 -41690561 - B4A SINE B4 -1 291 2 6 1484 28 61 0 0 chr3 117909907 117909956 -41689827 + AT_rich Low_complexity Low_complexity 1 49 0 6 1484 456 188 198 0 chr3 117911784 117911880 -41687903 + B3 SINE B2 1 115 -101 6 1484 321 310 0 44 chr3 117912038 117912129 -41687654 + ID_B1 SINE B4 84 170 -54 6 1484 254 26 53 0 chr3 117912156 117912194 -41687589 + (CAGAGA)n Simple_repeat Simple_repeat 3 42 0 6 1484 265 179 0 0 chr3 117912194 117912250 -41687533 + (CAGA)n Simple_repeat Simple_repeat 3 58 0 6 1484 798 161 0 0 chr3 117912255 117912429 -41687354 + GA-rich Low_complexity Low_complexity 2 175 0 6 1484 1233 48 0 0 chr3 117912819 117912966 -41686817 - B1_Mm SINE Alu 0 147 1 6 1484 389 369 38 6 chr3 117913247 117913405 -41686378 - B4A SINE B4 -129 163 1 6 1484 853 252 75 10 chr3 117914735 117914935 -41684848 - B3 SINE B2 -2 214 2 6 1484 972 293 71 62 chr3 117915078 117915656 -41684127 - L1MB3 LINE L1 -9 6174 5592 6 1484 955 306 105 55 chr3 117915749 117916160 -41683623 - Lx8 LINE L1 0 7473 7030 6 1484 2307 80 39 60 chr3 117916160 117916494 -41683289 + ORR1A2 LTR MaLR 1 327 0 6 1484 955 308 104 48 chr3 117916494 117916625 -41683158 - Lx8 LINE L1 -444 7029 6886 6 1484 456 172 0 0 chr3 117916645 117916732 -41683051 + (TA)n Simple_repeat Simple_repeat 2 88 0 6 1484 24 32 0 0 chr3 117917631 117917662 -41682121 + AT_rich Low_complexity Low_complexity 1 31 0 6 1484 2193 101 3 6 chr3 117917720 117918050 -41681733 + L1_Mus4 LINE L1 6308 6636 0 6 1484 653 311 61 28 chr3 117918119 117918331 -41681452 + B4 SINE B4 1 219 -73 6 1484 849 81 0 0 chr3 117918341 117918464 -41681319 + (TAGA)n Simple_repeat Simple_repeat 2 124 0 6 1484 372 22 0 0 chr3 117918958 117919003 -41680780 + (TAA)n Simple_repeat Simple_repeat 2 46 0 6 1484 261 0 0 0 chr3 117919619 117919648 -41680135 + (A)n Simple_repeat Simple_repeat 1 29 0 6 1484 858 109 0 0 chr3 117919880 117920008 -41679775 + (TG)n Simple_repeat Simple_repeat 2 129 0 6 1484 871 243 62 69 chr3 117920365 117920639 -41679144 - RLTR25A LTR ERVK 0 1103 832 6 1484 1539 92 31 9 chr3 117920704 117920933 -41678850 + L1Md_F2 LINE L1 6348 6581 -1 6 1484 259 137 78 0 chr3 117920986 117921037 -41678746 - U7 snRNA snRNA -2 61 7 6 1484 4006 149 120 33 chr3 117921246 117921328 -41678455 - RLTR25A LTR ERVK -218 885 821 6 1484 2873 72 14 30 chr3 117921328 117921756 -41678027 - BGLII LTR ERVK 0 421 1 6 1484 4006 149 120 33 chr3 117921756 117922487 -41677296 - RLTR25A LTR ERVK -283 820 1 6 1484 553 150 41 8 chr3 117923084 117923205 -41676578 - Lx9 LINE L1 -3 7641 7517 6 1484 345 24 0 0 chr3 117923205 117923247 -41676536 + (CA)n Simple_repeat Simple_repeat 2 43 0 6 1484 2497 204 88 14 chr3 117923255 117923821 -41675962 - Lx9 LINE L1 -170 7474 6867 6 1484 945 221 14 47 chr3 117923896 117924110 -41675673 - B3 SINE B2 -4 212 6 6 1484 393 297 153 52 chr3 117924113 117924163 -41675620 - L1M4 LINE L1 -1425 4721 4675 6 1484 2345 203 29 19 chr3 117924163 117924685 -41675098 + RLTR11A2 LTR ERVK 1 527 0 6 1484 393 297 153 52 chr3 117924685 117925210 -41674573 - L1M4 LINE L1 -1472 4674 4088 6 1484 495 292 25 64 chr3 117925280 117925437 -41674346 - ID_B1 SINE B4 -4 220 70 6 1484 3771 163 130 55 chr3 117925466 117926305 -41673478 + RMER19B LTR ERVK 1 902 0 6 1484 1170 308 30 15 chr3 117926503 117926839 -41672944 - ORR1E LTR MaLR 0 359 19 6 1484 344 22 22 0 chr3 117926846 117926891 -41672892 + (TTTC)n Simple_repeat Simple_repeat 2 47 0 6 1484 946 267 5 0 chr3 117926895 117927101 -41672682 - B3 SINE B2 -1 215 9 6 1484 280 381 17 0 chr3 117927154 117927272 -41672511 + PB1D9 SINE Alu 1 120 0 6 1484 1725 316 41 7 chr3 117927344 117927958 -41671825 + Lx8 LINE L1 6203 6837 -636 6 1484 243 0 0 0 chr3 117928122 117928149 -41671634 + (TG)n Simple_repeat Simple_repeat 2 28 0 6 1484 230 299 79 16 chr3 117928202 117928392 -41671391 - L1M4 LINE L1 -2168 3978 3777 6 1484 6602 59 13 0 chr3 117928540 117929375 -41670408 - L1_Mus1 LINE L1 -134 6433 5588 6 1484 786 85 0 0 chr3 117929376 117929494 -41670289 + L1_Mus1 LINE L1 6450 6567 0 6 1484 207 0 0 0 chr3 117929516 117929539 -41670244 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 6 1484 1333 194 151 0 chr3 117929572 117929897 -41669886 + ORR1D1 LTR MaLR 1 374 0 6 1484 427 256 121 46 chr3 117929966 117930289 -41669494 - L1M4 LINE L1 -3011 3132 2786 6 1484 21 0 0 0 chr3 117930414 117930435 -41669348 + AT_rich Low_complexity Low_complexity 1 21 0 6 1484 465 206 0 0 chr3 117930860 117930962 -41668821 + (CATA)n Simple_repeat Simple_repeat 3 104 0 7 1484 3265 41 8 0 chr3 117930965 117931355 -41668428 - MTA_Mm LTR MaLR 0 396 4 7 1484 648 97 0 0 chr3 117931355 117931448 -41668335 + (CA)n Simple_repeat Simple_repeat 2 94 0 7 1484 27 29 0 0 chr3 117931585 117931619 -41668164 + AT_rich Low_complexity Low_complexity 1 34 0 7 1484 3153 243 72 43 chr3 117931679 117931769 -41668014 + Lx6 LINE L1 6573 6668 -792 7 1484 378 0 0 0 chr3 117931769 117931811 -41667972 + (CA)n Simple_repeat Simple_repeat 2 43 0 7 1484 3153 243 72 43 chr3 117931811 117931868 -41667915 + Lx6 LINE L1 6669 6723 -737 7 1484 1899 181 11 11 chr3 117931868 117932221 -41667562 + RLTR15 LTR ERVK 3 355 -4 7 1484 3153 243 72 43 chr3 117932221 117932933 -41666850 + Lx6 LINE L1 6724 7457 -3 7 1484 407 329 64 102 chr3 117933284 117933782 -41666001 + HAL1 LINE L1 812 1290 -1217 7 1484 630 37 0 0 chr3 117933929 117934010 -41665773 + (GA)n Simple_repeat Simple_repeat 1 81 0 7 1484 1094 90 13 0 chr3 117934012 117934168 -41665615 + BGLII_Mus LTR ERVK 265 422 0 7 1484 246 323 31 0 chr3 117934254 117934350 -41665433 + MTEa LTR MaLR 281 379 0 7 1484 23 0 0 0 chr3 117934662 117934685 -41665098 + AT_rich Low_complexity Low_complexity 1 23 0 7 1484 388 301 51 83 chr3 117934757 117934913 -41664870 + RSINE1 SINE B4 15 165 0 7 1484 244 241 63 0 chr3 117934914 117934993 -41664790 + (CATATA)n Simple_repeat Simple_repeat 2 85 0 7 1484 300 268 78 21 chr3 117934993 117935134 -41664649 + HAL1 LINE L1 2002 2150 -357 7 1484 252 274 43 0 chr3 117935773 117935890 -41663893 + (TAGA)n Simple_repeat Simple_repeat 1 122 0 7 1484 312 339 127 82 chr3 117936026 117936293 -41663490 + B4A SINE B4 2 280 -12 7 1484 279 71 0 0 chr3 117937082 117937124 -41662659 + (GAAA)n Simple_repeat Simple_repeat 2 43 0 7 1484 227 329 60 13 chr3 117937208 117937359 -41662424 - RMER12 LTR ERVK -476 846 689 7 1484 311 0 0 25 chr3 117938048 117938088 -41661695 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 7 1484 319 322 108 50 chr3 117939004 117939262 -41660521 + B4 SINE B4 2 274 -18 7 1484 5556 160 40 2 chr3 117939312 117940762 -41659021 - Lx4B LINE L1 -636 6422 4906 7 1484 3285 161 28 59 chr3 117940767 117941425 -41658358 - Lx4B LINE L1 -3042 2835 2197 7 1484 2001 60 0 11 chr3 117941425 117941693 -41658090 - L1_Mus1 LINE L1 0 6567 6303 7 1484 3285 161 28 59 chr3 117941693 117941747 -41658036 - Lx4B LINE L1 -3681 2196 2145 7 1484 299 25 0 24 chr3 117941747 117941788 -41657995 + (TA)n Simple_repeat Simple_repeat 2 41 0 7 1484 8622 69 30 0 chr3 117941788 117943589 -41656194 - L1_Mus1 LINE L1 -7 6560 4712 7 1484 3576 188 47 26 chr3 117943580 117944792 -41654991 - Lx4B LINE L1 -3717 2160 919 7 1484 186 320 90 67 chr3 117945353 117945487 -41654296 - L2b LINE L2 -186 3189 3053 7 1484 342 341 90 5 chr3 117946205 117946417 -41653366 + L2a LINE L2 2949 3178 -248 7 1484 231 36 0 0 chr3 117946484 117946512 -41653271 + (TA)n Simple_repeat Simple_repeat 2 29 0 7 1484 207 350 25 0 chr3 117947383 117947463 -41652320 + L2a LINE L2 3295 3376 -50 7 1484 438 229 0 0 chr3 117947888 117948067 -41651716 + GA-rich Low_complexity Low_complexity 2 180 0 7 1484 225 0 0 0 chr3 117948068 117948093 -41651690 + (TA)n Simple_repeat Simple_repeat 1 25 0 7 1484 261 0 0 0 chr3 117948835 117948864 -41650919 + (CA)n Simple_repeat Simple_repeat 2 30 0 7 1484 405 103 0 0 chr3 117948864 117948932 -41650851 + (GA)n Simple_repeat Simple_repeat 1 68 0 7 1484 387 0 0 0 chr3 117948958 117949001 -41650782 + (TG)n Simple_repeat Simple_repeat 2 44 0 7 1484 871 281 68 16 chr3 117949033 117949283 -41650500 - B4A SINE B4 -27 265 3 7 1484 432 0 0 0 chr3 117951399 117951447 -41648336 + (TA)n Simple_repeat Simple_repeat 1 48 0 7 1484 744 331 71 16 chr3 117951458 117951897 -41647886 + MER67D LTR ERV1 52 514 0 7 1484 516 304 51 0 chr3 117952014 117952152 -41647631 + B4 SINE B4 3 147 -145 7 1484 245 234 0 0 chr3 117952204 117952251 -41647532 + (CA)n Simple_repeat Simple_repeat 1 47 0 7 1484 213 211 0 0 chr3 117952268 117952320 -41647463 + GA-rich Low_complexity Low_complexity 1 52 0 7 1484 237 268 0 0 chr3 117952324 117952380 -41647403 + G-rich Low_complexity Low_complexity 4 59 0 7 1484 298 291 0 0 chr3 117953104 117953183 -41646600 - ID4 SINE ID 0 83 5 7 1484 694 136 15 0 chr3 117953607 117953739 -41646044 + CT-rich Low_complexity Low_complexity 5 138 0 7 1484 1199 72 94 0 chr3 117953740 117953920 -41645863 - L1_Mus3 LINE L1 -12 6626 6430 7 1484 856 80 0 9 chr3 117953922 117954036 -41645747 + L1_Mus3 LINE L1 6355 6467 -171 7 1484 204 40 0 0 chr3 117954200 117954225 -41645558 + (TC)n Simple_repeat Simple_repeat 2 26 0 7 1484 1954 90 26 125 chr3 117954432 117954775 -41645008 - RLTR10E LTR ERVK -2 309 1 7 1484 229 263 0 17 chr3 117955160 117955218 -41644565 + GA-rich Low_complexity Low_complexity 3 59 0 7 1484 242 250 0 0 chr3 117955354 117955398 -41644385 + polypurine Low_complexity Low_complexity 1 44 0 7 1484 858 266 50 38 chr3 117956093 117956362 -41643421 - MTD LTR MaLR -55 364 86 7 1484 748 118 16 0 chr3 117956375 117956502 -41643281 + (GAA)n Simple_repeat Simple_repeat 1 129 0 7 1484 258 143 41 0 chr3 117956503 117956552 -41643231 + GA-rich Low_complexity Low_complexity 1 51 0 7 1484 209 182 0 18 chr3 117956635 117956691 -41643092 + CT-rich Low_complexity Low_complexity 2 56 0 7 1484 232 263 23 106 chr3 117957149 117957190 -41642593 - Lx8 LINE L1 -1553 5920 5890 7 1484 336 24 0 0 chr3 117957190 117957231 -41642552 + (CA)n Simple_repeat Simple_repeat 2 42 0 7 1484 232 263 23 106 chr3 117957231 117957321 -41642462 - Lx8 LINE L1 -1584 5889 5800 7 1484 1656 311 86 23 chr3 117957368 117958098 -41641685 + Lx8 LINE L1 6600 7375 -98 7 1484 952 259 71 117 chr3 117958137 117958505 -41641278 - MTE2a LTR MaLR -28 351 1 7 1484 2048 135 17 33 chr3 117958606 117958967 -41640816 - Lx2 LINE L1 -2 6995 6641 7 1484 324 48 0 0 chr3 117959024 117959066 -41640717 + (TG)n Simple_repeat Simple_repeat 2 43 0 7 1484 313 344 105 43 chr3 117959092 117959350 -41640433 - B4A SINE B4 -17 275 2 7 1484 362 250 118 53 chr3 117960680 117960832 -41638951 - ORR1E LTR MaLR -159 200 39 7 1484 270 0 0 0 chr3 117960840 117960870 -41638913 + (TG)n Simple_repeat Simple_repeat 2 31 0 7 1484 278 262 122 8 chr3 117961077 117961200 -41638583 + L1MA5 LINE L1 6154 6290 -10 7 1484 6945 33 0 1 chr3 117962096 117962916 -41636867 + L1Md_F3 LINE L1 5752 6570 -14 7 1484 288 322 32 16 chr3 117963679 117963802 -41635981 + L2 LINE L2 1478 1602 -1817 7 1484 2806 76 5 55 chr3 117963824 117964242 -41635541 + L1_Mus2 LINE L1 6170 6566 0 7 1485 21 36 0 0 chr3 117966033 117966061 -41633722 + AT_rich Low_complexity Low_complexity 1 28 0 7 1485 31 68 0 0 chr3 117966695 117966754 -41633029 + AT_rich Low_complexity Low_complexity 1 59 0 7 1485 318 50 0 0 chr3 117966765 117966805 -41632978 + (TATG)n Simple_repeat Simple_repeat 4 43 0 7 1485 237 287 88 81 chr3 117966964 117967112 -41632671 - MIRb SINE MIR -84 184 36 7 1485 933 220 0 0 chr3 117969487 117969660 -41630123 + URR1B DNA MER1_type 1 173 -52 7 1485 6163 57 18 0 chr3 117969661 117969814 -41629969 - RLTR13C2 LTR ERVK 0 808 642 7 1485 3027 50 0 3 chr3 117969814 117970192 -41629591 - L1Md_F3 LINE L1 -15 6569 6193 7 1485 6163 57 18 0 chr3 117970192 117970832 -41628951 - RLTR13C2 LTR ERVK -167 641 2 7 1485 266 93 55 18 chr3 117970832 117970887 -41628896 + URR1B DNA MER1_type 169 225 0 7 1485 743 302 39 57 chr3 117970887 117971164 -41628619 + MTE2a LTR MaLR 94 365 -14 7 1485 479 331 0 0 chr3 117971177 117971301 -41628482 + ID_B1 SINE B4 93 216 -8 7 1485 489 267 32 26 chr3 117972628 117972782 -41627001 - RSINE1 SINE B4 -8 157 3 7 1485 474 65 0 0 chr3 117972825 117972887 -41626896 + (TAA)n Simple_repeat Simple_repeat 2 63 0 7 1485 6009 166 82 17 chr3 117973354 117974897 -41624886 + Lx4B LINE L1 5397 7055 -3 7 1485 387 0 0 0 chr3 117975717 117975760 -41624023 + (CA)n Simple_repeat Simple_repeat 2 44 0 7 1485 1156 82 0 0 chr3 117976450 117976597 -41623186 + B1_Mus2 SINE Alu 1 147 0 7 1485 788 65 0 0 chr3 117976954 117977096 -41622687 + L1_Mus1 LINE L1 6451 6567 0 7 1485 233 158 49 0 chr3 117977146 117977228 -41622555 + (TAGA)n Simple_repeat Simple_repeat 3 88 0 7 1485 276 296 12 0 chr3 117977231 117977312 -41622471 - Lx8 LINE L1 -9 7464 7383 7 1485 278 98 0 19 chr3 117979514 117979566 -41620217 + (TAAA)n Simple_repeat Simple_repeat 3 53 0 7 1485 507 312 50 45 chr3 117979986 117980187 -41619596 + B3A SINE B2 8 209 -7 7 1485 516 59 0 0 chr3 117981174 117981242 -41618541 + (TC)n Simple_repeat Simple_repeat 2 69 0 7 1485 201 345 0 0 chr3 117982272 117982327 -41617456 - L2a LINE L2 -21 3405 3351 7 1485 222 62 0 0 chr3 117982534 117982566 -41617217 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 7 1485 3329 50 24 0 chr3 117982757 117983180 -41616603 + MT2C_Mm LTR ERVL 1 433 -42 7 1485 2240 73 10 3 chr3 117983181 117983495 -41616288 + MT-int LTR MaLR 1 316 -782 7 1485 645 14 0 0 chr3 117983515 117983589 -41616194 - L1Md_F2 LINE L1 -246 6336 6263 7 1485 1924 39 0 0 chr3 117983589 117983820 -41615963 + L1Md_T LINE L1 6352 6582 0 7 1485 216 0 0 0 chr3 117983920 117983944 -41615839 + (A)n Simple_repeat Simple_repeat 1 24 0 7 1485 572 271 0 0 chr3 117985467 117985585 -41614198 + RSINE1 SINE B4 3 120 -45 7 1485 203 387 70 42 chr3 117986858 117987117 -41612666 - L2 LINE L2 -626 2793 2528 7 1485 2811 229 55 2 chr3 117987450 117987928 -41611855 + RMER1B Other Other 443 937 -129 7 1485 315 49 0 0 chr3 117987928 117987969 -41611814 + (TTTA)n Simple_repeat Simple_repeat 2 42 0 7 1485 2811 229 55 2 chr3 117987969 117988067 -41611716 + RMER1B Other Other 938 1050 -16 7 1485 802 69 0 0 chr3 117988102 117988204 -41611579 + BGLII LTR ERVK 1 102 -319 7 1485 206 388 53 35 chr3 117988207 117988372 -41611411 - L2 LINE L2 -2181 1238 1069 7 1485 423 0 0 0 chr3 117988372 117988419 -41611364 + (TG)n Simple_repeat Simple_repeat 2 48 0 7 1485 206 388 53 35 chr3 117988419 117988480 -41611303 - L2 LINE L2 -2351 1068 1008 7 1485 337 304 131 9 chr3 117988653 117988882 -41610901 - MIR SINE MIR 0 262 6 7 1485 27 29 0 0 chr3 117989142 117989176 -41610607 + AT_rich Low_complexity Low_complexity 1 34 0 7 1485 207 0 0 0 chr3 117989426 117989449 -41610334 + (TG)n Simple_repeat Simple_repeat 1 23 0 7 1485 378 0 0 0 chr3 117989449 117989490 -41610293 + (GA)n Simple_repeat Simple_repeat 1 42 0 7 1485 279 200 120 0 chr3 117989491 117989591 -41610192 + Lx9 LINE L1 7526 7637 -7 8 1485 468 369 67 8 chr3 117989863 117990101 -41609682 - MLT1E LTR MaLR 0 653 402 8 1485 306 318 0 0 chr3 117990184 117990272 -41609511 - MLT1E LTR MaLR -431 222 135 8 1485 1072 364 36 32 chr3 117990424 117990947 -41608836 - MER44B DNA MER2_type -23 527 3 8 1485 1978 321 80 26 chr3 117991150 117992167 -41607616 + Lx8 LINE L1 6375 7445 -28 8 1485 840 248 68 15 chr3 117992167 117992372 -41607411 + B3 SINE B2 1 216 0 8 1485 27 49 0 0 chr3 117992427 117992468 -41607315 + AT_rich Low_complexity Low_complexity 1 41 0 8 1485 1075 174 24 0 chr3 117992817 117993024 -41606759 - Lx2 LINE L1 -2 6995 6784 8 1485 3994 44 4 8 chr3 117993132 117993638 -41606145 - L1Md_F2 LINE L1 0 6582 6079 8 1485 220 0 0 79 chr3 117994089 117994127 -41605656 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 8 1485 935 142 27 49 chr3 117994136 117994321 -41605462 + B2_Mm2 SINE B2 1 181 -14 8 1485 450 214 10 10 chr3 117995038 117995142 -41604641 - L1M1 LINE L1 -481 5819 5716 8 1485 300 164 121 21 chr3 117995317 117995412 -41604371 + Lx5 LINE L1 5762 5877 -1173 8 1485 347 335 43 60 chr3 117995421 117995656 -41604127 + Lx8 LINE L1 7242 7472 -1 8 1485 804 68 0 0 chr3 117996610 117996728 -41603055 - L1_Mus2 LINE L1 0 6566 6449 8 1485 315 0 0 0 chr3 117998419 117998454 -41601329 + (TG)n Simple_repeat Simple_repeat 2 36 0 8 1485 234 380 0 14 chr3 117998482 117998554 -41601229 - RSINE1 SINE B4 -29 136 66 8 1485 898 279 8 0 chr3 118000010 118000247 -41599536 - Lx9 LINE L1 -369 7275 7037 1 1485 877 227 36 0 chr3 118000257 118000451 -41599332 + Lx9 LINE L1 7265 7465 -179 1 1485 342 0 0 0 chr3 118000454 118000492 -41599291 + (TA)n Simple_repeat Simple_repeat 2 39 0 2 1485 437 286 127 55 chr3 118001733 118002008 -41597775 + B4 SINE B4 16 274 -18 3 1485 399 21 0 0 chr3 118002031 118002079 -41597704 + (CA)n Simple_repeat Simple_repeat 2 49 0 4 1485 422 308 23 19 chr3 118003386 118003505 -41596278 + B3 SINE B2 1 124 -71 5 1485 405 109 0 0 chr3 118003520 118003584 -41596199 + (CA)n Simple_repeat Simple_repeat 1 64 0 6 1485 288 114 12 48 chr3 118004202 118004285 -41595498 + (CAAA)n Simple_repeat Simple_repeat 1 80 0 7 1485 581 285 35 11 chr3 118004677 118004851 -41594932 + B3A SINE B2 5 182 -16 8 1485 447 130 0 0 chr3 118004870 118004947 -41594836 + (CA)n Simple_repeat Simple_repeat 2 78 0 9 1485 417 329 132 42 chr3 118004990 118005516 -41594267 + L1MEf LINE L1 913 1478 -4722 1 1485 1138 55 0 20 chr3 118005516 118005665 -41594118 + B1_Mm SINE Alu 2 147 0 1 1485 417 329 132 42 chr3 118005665 118006149 -41593634 + L1MEf LINE L1 1479 2013 -4187 1 1485 189 0 0 0 chr3 118006647 118006668 -41593115 + (CAA)n Simple_repeat Simple_repeat 1 21 0 1 1485 260 312 143 25 chr3 118006805 118007042 -41592741 - L1MC3 LINE L1 -1707 6078 5814 1 1485 291 250 45 0 chr3 118007110 118007198 -41592585 - L1MC3 LINE L1 -2111 5674 5583 1 1485 869 29 0 49 chr3 118007268 118007412 -41592371 + (TGG)n Simple_repeat Simple_repeat 1 137 0 1 1485 447 305 67 16 chr3 118007714 118007907 -41591876 - Lx9 LINE L1 -180 7464 7262 1 1485 188 103 16 49 chr3 118008217 118008278 -41591505 + A-rich Low_complexity Low_complexity 2 60 0 1 1485 25 31 0 0 chr3 118009382 118009414 -41590369 + AT_rich Low_complexity Low_complexity 1 32 0 1 1485 464 283 17 0 chr3 118009818 118009991 -41589792 + (TATG)n Simple_repeat Simple_repeat 2 177 0 1 1485 519 295 6 0 chr3 118009931 118010104 -41589679 + (TG)n Simple_repeat Simple_repeat 2 175 0 1 1485 352 220 6 6 chr3 118010115 118010275 -41589508 + (TG)n Simple_repeat Simple_repeat 1 160 0 1 1485 450 295 92 102 chr3 118010275 118010569 -41589214 - B4A SINE B4 0 292 2 2 1485 34 24 0 0 chr3 118011956 118011997 -41587786 + AT_rich Low_complexity Low_complexity 1 41 0 2 1485 1942 59 0 48 chr3 118012042 118012311 -41587472 - L1_Mus1 LINE L1 -4 6563 6308 2 1485 21 0 0 0 chr3 118012328 118012349 -41587434 + AT_rich Low_complexity Low_complexity 1 21 0 2 1485 266 125 0 67 chr3 118012632 118012692 -41587091 - B3 SINE B2 -1 215 160 2 1485 204 67 0 0 chr3 118012916 118012946 -41586837 + (TAAAAA)n Simple_repeat Simple_repeat 2 31 0 2 1485 603 67 0 0 chr3 118014186 118014275 -41585508 + (TC)n Simple_repeat Simple_repeat 2 90 0 2 1485 942 236 125 0 chr3 118014961 118015266 -41584517 + Lx9 LINE L1 7302 7644 0 2 1485 213 39 0 0 chr3 118016012 118016038 -41583745 + (TTTTG)n Simple_repeat Simple_repeat 4 29 0 2 1485 1061 101 0 0 chr3 118016040 118016179 -41583604 - B1_Mus1 SINE Alu -6 142 4 2 1485 256 400 32 0 chr3 118016275 118016400 -41583383 + B1F SINE Alu 1 129 -20 3 1485 374 318 11 28 chr3 118016400 118016581 -41583202 + GA-rich Low_complexity Low_complexity 3 180 0 3 1485 250 362 6 6 chr3 118016771 118016932 -41582851 + (CA)n Simple_repeat Simple_repeat 2 162 0 3 1485 259 259 94 43 chr3 118016958 118017075 -41582708 + Charlie21a DNA MER1_type 559 681 -532 3 1485 32090 84 5 19 chr3 118017077 118022303 -41577480 + L1Md_F2 LINE L1 449 5585 -298 3 1485 7696 65 3 2 chr3 118022304 118023287 -41576496 + L1Md_F2 LINE L1 5587 6570 -12 3 1485 582 265 142 21 chr3 118023395 118023726 -41576057 + Charlie21a DNA MER1_type 713 1083 -130 3 1485 216 182 0 0 chr3 118023871 118023915 -41575868 + GA-rich Low_complexity Low_complexity 5 48 0 3 1485 362 279 139 0 chr3 118024158 118024323 -41575460 - Cheshire DNA MER1_type -2207 213 26 3 1485 284 347 0 17 chr3 118024394 118024506 -41575277 + PB1D7 SINE Alu 3 109 -40 3 1485 255 401 37 15 chr3 118024506 118024528 -41575255 + B4 SINE B4 88 224 -68 3 1485 4618 99 0 31 chr3 118024590 118025291 -41574492 + L1Md_F2 LINE L1 5904 6582 0 3 1485 531 287 36 66 chr3 118026245 118026547 -41573236 + Lx8 LINE L1 7178 7470 -3 4 1485 1014 200 9 23 chr3 118027056 118027276 -41572507 + Lx2B LINE L1 6769 6985 -15 4 1485 244 250 31 0 chr3 118027379 118027443 -41572340 + GA-rich Low_complexity Low_complexity 2 67 0 4 1485 247 337 47 19 chr3 118027478 118027584 -41572199 + B4 SINE B4 3 111 -181 4 1485 210 149 42 21 chr3 118029963 118030011 -41569772 + G-rich Low_complexity Low_complexity 5 53 0 4 1485 471 304 150 25 chr3 118031390 118031710 -41568073 - L3 LINE CR1 -953 3536 3177 4 1485 264 30 0 0 chr3 118031992 118032025 -41567758 + (TG)n Simple_repeat Simple_repeat 2 34 0 4 1485 1144 75 0 20 chr3 118032757 118032907 -41566876 + B1_Mus1 SINE Alu 2 148 0 4 1485 245 27 0 51 chr3 118032907 118032946 -41566837 + (CAAAAA)n Simple_repeat Simple_repeat 6 42 0 4 1485 252 0 0 0 chr3 118036012 118036040 -41563743 + (TC)n Simple_repeat Simple_repeat 2 29 0 4 1485 371 330 144 42 chr3 118036183 118036398 -41563385 - MIR SINE MIR -11 251 15 5 1485 564 287 0 94 chr3 118036927 118037108 -41562675 + RSINE1 SINE B4 2 165 0 5 1485 21 0 0 0 chr3 118037330 118037351 -41562432 + AT_rich Low_complexity Low_complexity 1 21 0 5 1485 396 193 17 8 chr3 118037614 118037734 -41562049 + (TAGA)n Simple_repeat Simple_repeat 3 123 0 5 1485 414 0 0 0 chr3 118037848 118037894 -41561889 + (TG)n Simple_repeat Simple_repeat 2 47 0 5 1485 754 272 52 79 chr3 118038474 118038872 -41560911 - MTE2a LTR MaLR -14 405 18 5 1485 2741 176 18 20 chr3 118039324 118039875 -41559908 + Lx4B LINE L1 6501 7050 -8 5 1485 594 294 12 48 chr3 118040569 118040737 -41559046 + RSINE1 SINE B4 2 163 -2 5 1485 26 0 0 0 chr3 118040756 118040782 -41559001 + AT_rich Low_complexity Low_complexity 1 26 0 5 1485 1107 80 0 0 chr3 118040949 118041087 -41558696 + B1_Mm SINE Alu 4 141 -6 5 1485 1153 259 141 6 chr3 118041622 118041956 -41557827 - MTE2b LTR MaLR 0 379 1 6 1485 459 0 0 0 chr3 118043001 118043052 -41556731 + (TAA)n Simple_repeat Simple_repeat 1 51 0 6 1485 582 82 0 20 chr3 118043947 118044046 -41555737 - L1Md_F2 LINE L1 -3 6579 6483 6 1485 756 252 9 36 chr3 118044210 118044432 -41555351 + B3 SINE B2 1 216 0 6 1485 425 269 80 15 chr3 118044805 118044978 -41554805 + Lx7 LINE L1 5547 5733 -144 6 1485 555 16 0 0 chr3 118044980 118045044 -41554739 + (TA)n Simple_repeat Simple_repeat 1 64 0 6 1485 364 353 0 48 chr3 118045491 118045616 -41554167 + B1F1 SINE Alu 10 128 -21 6 1485 929 141 43 0 chr3 118047182 118047366 -41552417 + Lx2B LINE L1 6809 7000 0 6 1485 354 245 69 0 chr3 118048902 118049004 -41550779 - MIRb SINE MIR -6 262 154 6 1485 255 61 0 0 chr3 118049483 118049516 -41550267 + (CAGGA)n Simple_repeat Simple_repeat 5 37 0 6 1485 262 284 134 17 chr3 118050179 118050351 -41549432 - MER33 DNA MER1_type -28 296 105 7 1485 3036 169 99 84 chr3 118050399 118051099 -41548684 - RMER6D LTR ERVK -1 719 10 7 1485 1261 106 26 0 chr3 118051471 118051660 -41548123 - B2_Mm2 SINE B2 -1 194 1 7 1485 215 186 23 0 chr3 118052644 118052687 -41547096 + (TA)n Simple_repeat Simple_repeat 2 45 0 7 1485 9250 82 51 28 chr3 118053703 118055076 -41544707 + Lx3_Mus LINE L1 5605 7008 -1 7 1485 3602 129 35 0 chr3 118055231 118055805 -41543978 - L1_Mur2 LINE L1 -1358 4519 3926 7 1485 7047 131 45 0 chr3 118055806 118056912 -41542871 + Lx2 LINE L1 5608 6763 -234 7 1485 369 241 25 130 chr3 118057816 118057978 -41541805 + MLT1N2 LTR MaLR 404 548 -14 7 1485 698 12 23 0 chr3 118059388 118059474 -41540309 + (TTTTA)n Simple_repeat Simple_repeat 2 89 0 7 1485 228 67 0 0 chr3 118060854 118060884 -41538899 + (A)n Simple_repeat Simple_repeat 1 30 0 7 1485 204 215 30 15 chr3 118061266 118061332 -41538451 + T-rich Low_complexity Low_complexity 2 68 0 8 1485 17537 16 0 0 chr3 118061337 118064144 -41535639 - L1Md_T LINE L1 0 6582 3834 8 1485 263 314 37 19 chr3 118064151 118064258 -41535525 - PB1D10 SINE Alu -7 110 2 8 1485 30 0 0 0 chr3 118065395 118065425 -41534358 + AT_rich Low_complexity Low_complexity 1 30 0 8 1485 22 35 0 0 chr3 118066084 118066113 -41533670 + AT_rich Low_complexity Low_complexity 1 29 0 8 1485 261 0 0 0 chr3 118066779 118066808 -41532975 + (T)n Simple_repeat Simple_repeat 1 29 0 8 1485 253 361 23 8 chr3 118067647 118067778 -41532005 + MIR SINE MIR 4 136 -126 8 1485 1127 47 0 13 chr3 118067840 118067991 -41531792 - L1Md_F2 LINE L1 -4 6578 6430 8 1485 2973 45 0 0 chr3 118067993 118068350 -41531433 + L1Md_F2 LINE L1 6038 6394 -188 8 1485 251 284 53 13 chr3 118068473 118068548 -41531235 - RSINE1 SINE B4 -86 79 2 8 1485 360 333 79 13 chr3 118068583 118068735 -41531048 + MER2B DNA MER2_type 1 162 -174 8 1485 277 248 57 38 chr3 118068823 118068928 -41530855 + MER2 DNA MER2_type 84 190 -155 9 1485 35 41 0 0 chr3 118070880 118070929 -41528854 + AT_rich Low_complexity Low_complexity 1 49 0 9 1485 226 344 0 0 chr3 118071130 118071220 -41528563 + Lx4B LINE L1 6295 6384 -674 9 1485 1521 310 39 44 chr3 118071224 118071787 -41527996 + Lx5 LINE L1 6484 7043 -7 9 1485 710 95 16 16 chr3 118071922 118072050 -41527733 + (GGAA)n Simple_repeat Simple_repeat 2 129 0 9 1485 1034 206 13 44 chr3 118072155 118072384 -41527399 + Lx9 LINE L1 6604 6825 -819 9 1485 488 228 9 104 chr3 118072398 118072619 -41527164 + L1_Mus1 LINE L1 257 601 -6037 9 1485 482 248 15 8 chr3 118072679 118072813 -41526970 + L1Md_F LINE L1 578 712 -5807 9 1485 2346 201 8 0 chr3 118072815 118073292 -41526491 + L1Md_F LINE L1 628 1108 -5411 9 1485 30424 113 8 19 chr3 118073291 118075710 -41524073 + L1_Mus1 LINE L1 1073 3421 -2462 9 1485 955 83 0 46 chr3 118075710 118075862 -41523921 - L1_Mus1 LINE L1 0 6567 6423 9 1485 30424 99 7 12 chr3 118075862 118079020 -41520763 + L1_Mus1 LINE L1 3422 6567 0 9 1485 510 250 34 27 chr3 118079062 118079210 -41520573 - Lx9 LINE L1 -456 7188 7040 9 1485 649 178 46 7 chr3 118079215 118079368 -41520415 + Lx9 LINE L1 6897 7055 -589 9 1485 620 146 99 7 chr3 118079366 118079518 -41520265 + Lx9 LINE L1 7478 7643 -1 9 1485 1015 115 17 0 chr3 118079534 118079708 -41520075 + (TAGA)n Simple_repeat Simple_repeat 4 180 0 1 1485 1196 295 39 19 chr3 118081537 118081897 -41517886 + MTE2b LTR MaLR 13 379 0 1 1485 434 376 89 76 chr3 118082620 118083014 -41516769 + LTR78 LTR ERV1 9 407 -897 1 1485 364 306 76 19 chr3 118083289 118083499 -41516284 + L1MA9 LINE L1 5819 6040 -272 1 1485 231 286 90 11 chr3 118083531 118083708 -41516075 + L1MA9 LINE L1 6100 6290 -1 1 1485 1816 249 17 7 chr3 118083783 118084192 -41515591 + MTD LTR MaLR 2 414 -5 1 1485 380 321 22 22 chr3 118084270 118084404 -41515379 + LTR78 LTR ERV1 1171 1304 0 1 1485 415 324 0 105 chr3 118085371 118085571 -41514212 + MTEa LTR MaLR 7 185 -194 1 1485 621 0 0 0 chr3 118085583 118085652 -41514131 + (TC)n Simple_repeat Simple_repeat 1 69 0 1 1485 952 310 58 18 chr3 118085926 118086319 -41513464 - MTE2a LTR MaLR 0 419 1 1 1485 715 347 63 24 chr3 118087210 118087464 -41512319 - B4A SINE B4 -28 264 1 1 1485 943 305 68 35 chr3 118087545 118087885 -41511898 - ORR1E LTR MaLR -5 354 4 1 1485 226 264 41 62 chr3 118087920 118088017 -41511766 - L2a LINE L2 -1 3425 3331 1 1485 608 275 166 24 chr3 118089258 118089590 -41510193 - MTE2b LTR MaLR 0 379 1 1 1485 365 263 0 7 chr3 118090190 118090328 -41509455 + (TG)n Simple_repeat Simple_repeat 2 138 0 1 1485 198 71 0 0 chr3 118090328 118090356 -41509427 + (CAGAGA)n Simple_repeat Simple_repeat 3 30 0 1 1485 220 391 17 17 chr3 118090709 118090826 -41508957 - MER5B DNA MER1_type -44 134 18 1 1485 202 194 0 0 chr3 118091042 118091078 -41508705 + CT-rich Low_complexity Low_complexity 2 37 0 1 1485 1567 92 5 0 chr3 118091547 118091764 -41508019 + L1_Mus1 LINE L1 6348 6565 -2 1 1485 676 256 0 0 chr3 118092035 118092168 -41507615 + B1_Mur2 SINE Alu 1 133 -16 1 1485 45 34 0 0 chr3 118092724 118092783 -41507000 + AT_rich Low_complexity Low_complexity 1 59 0 1 1485 2027 56 0 4 chr3 118093347 118093598 -41506185 - L1_Mus1 LINE L1 -328 6239 5990 1 1485 2398 67 10 3 chr3 118093598 118093912 -41505871 + L1_Mus1 LINE L1 6252 6567 0 1 1485 352 305 124 28 chr3 118094219 118094502 -41505281 + L1M5 LINE L1 4251 4560 -1586 1 1485 229 82 20 20 chr3 118094532 118094582 -41505201 + (TTTTTG)n Simple_repeat Simple_repeat 5 54 0 1 1485 1135 75 0 0 chr3 118094618 118094765 -41505018 - B1_Mm SINE Alu 0 147 1 1 1485 1003 84 0 0 chr3 118094945 118095076 -41504707 + B1_Mus1 SINE Alu 2 132 -16 1 1485 279 0 0 0 chr3 118095076 118095107 -41504676 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1 1485 1562 128 46 25 chr3 118095273 118095554 -41504229 + Lx2B LINE L1 6709 6995 -5 1 1485 21 36 0 0 chr3 118095571 118095599 -41504184 + AT_rich Low_complexity Low_complexity 1 28 0 1 1485 318 256 14 6 chr3 118095655 118095729 -41504054 - ID4 SINE ID -69 83 7 1 185 245 380 0 0 chr3 118095842 118095950 -41503833 - PB1D10 SINE Alu -9 108 1 1 1486 523 71 10 39 chr3 118096086 118096188 -41503595 + (TA)n Simple_repeat Simple_repeat 2 100 0 1 1486 239 293 24 35 chr3 118096389 118096474 -41503309 + PB1D10 SINE Alu 34 117 0 1 1486 5250 96 34 24 chr3 118097087 118097884 -41501899 - L1_Mus3 LINE L1 0 6638 5834 1 1486 497 283 47 8 chr3 118098275 118098403 -41501380 - ETnERV2-int LTR ERVK -204 7202 7070 1 1486 3983 108 28 5 chr3 118098404 118099009 -41500774 - L1_Mm LINE L1 -47 5836 5218 1 1486 2228 165 12 2 chr3 118099008 118099409 -41500374 + L1_Mm LINE L1 4846 5250 -633 1 1486 21 0 0 0 chr3 118101180 118101201 -41498582 + AT_rich Low_complexity Low_complexity 1 21 0 1 1486 199 132 26 0 chr3 118101995 118102033 -41497750 + MIRc SINE MIR 84 122 -146 1 1486 5036 33 11 2 chr3 118102550 118103157 -41496626 - L1Md_F3 LINE L1 0 6584 5972 1 1486 26 0 0 0 chr3 118103891 118103917 -41495866 + AT_rich Low_complexity Low_complexity 1 26 0 1 1486 1528 111 5 0 chr3 118104468 118104684 -41495099 - L1_Mus3 LINE L1 -417 6221 6005 1 1486 8034 33 0 0 chr3 118104684 118105666 -41494117 + L1_Mm LINE L1 2511 3492 -2391 1 1486 4016 111 2 9 chr3 118105663 118106447 -41493336 - L1_Mus3 LINE L1 -633 6005 5228 1 1486 910 145 17 39 chr3 118106447 118106626 -41493157 + L1_Mus3 LINE L1 6457 6631 -7 1 1486 2411 337 78 9 chr3 118107819 118108977 -41490806 + Lx8 LINE L1 6224 7460 -13 1 1486 28 29 0 0 chr3 118108977 118109012 -41490771 + AT_rich Low_complexity Low_complexity 1 35 0 1 1486 3040 35 3 0 chr3 118109055 118109423 -41490360 + L1Md_F2 LINE L1 6202 6570 -12 1 1486 311 44 22 0 chr3 118110013 118110058 -41489725 + (TTG)n Simple_repeat Simple_repeat 2 47 0 1 1486 377 360 0 0 chr3 118110132 118110243 -41489540 - B1F SINE Alu -16 133 23 1 1486 537 92 0 0 chr3 118111110 118111186 -41488597 + (TC)n Simple_repeat Simple_repeat 1 76 0 1 1486 471 310 9 0 chr3 118111186 118111299 -41488484 - B1F1 SINE Alu -6 143 30 1 1486 811 306 5 5 chr3 118112644 118112828 -41486955 - B3 SINE B2 -27 189 6 1 1486 1880 82 52 7 chr3 118114304 118114575 -41485208 - L1Md_F2 LINE L1 -8 6574 6292 1 1486 4170 147 22 26 chr3 118114611 118115342 -41484441 - Lx3C LINE L1 -7 6969 6242 1 1486 965 229 86 35 chr3 118115503 118115851 -41483932 + ORR1D2 LTR MaLR 1 366 -4 1 1486 189 0 0 0 chr3 118118328 118118349 -41481434 + (CA)n Simple_repeat Simple_repeat 2 22 0 1 1486 498 165 0 0 chr3 118118392 118118495 -41481288 + (CA)n Simple_repeat Simple_repeat 2 104 0 1 1486 659 321 65 58 chr3 118121361 118121639 -41478144 + B4A SINE B4 3 282 -10 1 1486 522 119 0 0 chr3 118121659 118121743 -41478040 + (CA)n Simple_repeat Simple_repeat 1 84 0 1 1486 216 97 0 0 chr3 118123977 118124008 -41475775 + (TCTG)n Simple_repeat Simple_repeat 2 32 0 1 1486 643 200 22 30 chr3 118127019 118127153 -41472630 - B1_Mm SINE Alu -6 141 9 1 1486 244 359 32 58 chr3 118127384 118127538 -41472245 + MIRb SINE MIR 101 250 -18 1 1486 417 109 0 0 chr3 118127998 118128062 -41471721 + (CA)n Simple_repeat Simple_repeat 2 65 0 1 1486 432 0 0 0 chr3 118128431 118128479 -41471304 + (TG)n Simple_repeat Simple_repeat 2 49 0 1 1486 500 0 17 0 chr3 118129775 118129835 -41469948 + (TCCC)n Simple_repeat Simple_repeat 3 63 0 1 1486 24 0 0 0 chr3 118130410 118130434 -41469349 + AT_rich Low_complexity Low_complexity 1 24 0 1 1486 305 77 39 0 chr3 118130606 118130658 -41469125 + (CAAAA)n Simple_repeat Simple_repeat 2 55 0 1 1486 28 0 0 0 chr3 118132638 118132666 -41467117 + AT_rich Low_complexity Low_complexity 1 28 0 1 1486 497 134 36 0 chr3 118133743 118133855 -41465928 + GA-rich Low_complexity Low_complexity 1 116 0 1 1486 504 100 0 0 chr3 118134634 118134714 -41465069 + (TG)n Simple_repeat Simple_repeat 1 80 0 1 1486 288 222 0 0 chr3 118136686 118136758 -41463025 + (CGG)n Simple_repeat Simple_repeat 2 73 0 1 1486 252 300 0 0 chr3 118137015 118137095 -41462688 + G-rich Low_complexity Low_complexity 1 80 0 1 1486 612 0 0 0 chr3 118137130 118137198 -41462585 + (TC)n Simple_repeat Simple_repeat 1 68 0 1 1486 306 0 0 0 chr3 118139075 118139109 -41460674 + (TC)n Simple_repeat Simple_repeat 2 35 0 1 1486 261 0 0 0 chr3 118140805 118140834 -41458949 + (TG)n Simple_repeat Simple_repeat 1 29 0 1 1486 44 35 0 0 chr3 118141208 118141266 -41458517 + AT_rich Low_complexity Low_complexity 1 58 0 1 1486 180 0 0 0 chr3 118141830 118141850 -41457933 + (TTAA)n Simple_repeat Simple_repeat 4 23 0 1 1486 324 48 0 0 chr3 118142705 118142747 -41457036 + (CA)n Simple_repeat Simple_repeat 1 42 0 1 1486 297 0 0 0 chr3 118142747 118142779 -41457004 + (TA)n Simple_repeat Simple_repeat 1 33 0 1 1486 288 0 0 0 chr3 118142779 118142810 -41456973 + (GA)n Simple_repeat Simple_repeat 2 33 0 1 1486 24 0 0 0 chr3 118142850 118142874 -41456909 + AT_rich Low_complexity Low_complexity 1 24 0 1 1486 194 310 0 17 chr3 118142965 118143024 -41456759 + MIRm SINE MIR 216 273 -3 1 1486 243 0 0 0 chr3 118143055 118143082 -41456701 + (TG)n Simple_repeat Simple_repeat 1 27 0 1 1486 201 74 0 0 chr3 118143444 118143471 -41456312 + (TA)n Simple_repeat Simple_repeat 1 27 0 1 1486 450 0 0 0 chr3 118145640 118145690 -41454093 + (TG)n Simple_repeat Simple_repeat 1 50 0 1 1486 407 317 9 9 chr3 118145694 118145799 -41453984 - PB1D10 SINE Alu -12 105 1 1 1486 423 0 0 0 chr3 118146188 118146235 -41453548 + (TA)n Simple_repeat Simple_repeat 2 48 0 1 1486 257 169 62 0 chr3 118147385 118147450 -41452333 + Lx9 LINE L1 7570 7638 -6 1 1486 479 45 15 0 chr3 118147557 118147623 -41452160 + (TG)n Simple_repeat Simple_repeat 1 67 0 1 1486 695 254 158 88 chr3 118147828 118148100 -41451683 + B4 SINE B4 2 292 0 1 1486 450 0 0 0 chr3 118148374 118148424 -41451359 + (CA)n Simple_repeat Simple_repeat 1 50 0 1 1486 240 266 45 102 chr3 118149480 118149568 -41450215 + MT2B LTR ERVL 158 240 -361 1 1486 643 250 0 14 chr3 118149494 118149632 -41450151 + B1_Mur1 SINE Alu 12 147 -2 1 1486 479 133 19 19 chr3 118150872 118150979 -41448804 + GA-rich Low_complexity Low_complexity 2 108 0 1 1486 22 0 0 0 chr3 118151030 118151052 -41448731 + AT_rich Low_complexity Low_complexity 1 22 0 1 1486 1146 75 0 0 chr3 118151052 118151199 -41448584 - B1_Mm SINE Alu 0 147 1 1 1486 308 0 77 0 chr3 118151273 118151325 -41448458 + (TATAA)n Simple_repeat Simple_repeat 5 60 0 1 1486 1271 40 0 17 chr3 118151558 118151735 -41448048 + L1Md_F3 LINE L1 6411 6584 0 1 1486 256 267 0 0 chr3 118151781 118151841 -41447942 + ID4_ SINE ID 20 79 -4 1 1486 471 258 80 48 chr3 118152173 118152228 -41447555 - B2_Mm2 SINE B2 -2 193 137 1 1486 272 94 19 0 chr3 118152228 118152281 -41447502 + (TG)n Simple_repeat Simple_repeat 1 54 0 1 1486 548 220 15 30 chr3 118152281 118152412 -41447371 - B3 SINE B2 -87 129 1 1 1486 21 36 0 0 chr3 118153885 118153913 -41445870 + AT_rich Low_complexity Low_complexity 1 28 0 1 1486 705 274 28 19 chr3 118154015 118154227 -41445556 - B3 SINE B2 -1 215 2 1 1486 780 288 40 15 chr3 118154832 118155033 -41444750 - ID_B1 SINE B4 -2 222 17 2 1486 189 0 0 0 chr3 118157165 118157186 -41442597 + (TAAA)n Simple_repeat Simple_repeat 4 24 0 2 1486 21 57 0 0 chr3 118157587 118157622 -41442161 + AT_rich Low_complexity Low_complexity 1 35 0 2 1486 219 61 0 0 chr3 118158102 118158108 -41441675 + (TA)n Simple_repeat Simple_repeat 1 6 0 2 1486 207 0 0 0 chr3 118158108 118158131 -41441652 + (TG)n Simple_repeat Simple_repeat 2 24 0 2 1486 324 70 0 0 chr3 118158133 118158176 -41441607 + (CA)n Simple_repeat Simple_repeat 2 44 0 2 1486 219 61 0 0 chr3 118158176 118158199 -41441584 + (TA)n Simple_repeat Simple_repeat 2 24 0 2 1486 191 140 0 20 chr3 118161274 118161325 -41438458 + A-rich Low_complexity Low_complexity 2 51 0 2 1486 618 14 0 0 chr3 118162873 118162944 -41436839 + (TC)n Simple_repeat Simple_repeat 1 71 0 2 1486 237 108 0 0 chr3 118163628 118163665 -41436118 + (A)n Simple_repeat Simple_repeat 1 37 0 2 1486 699 213 14 41 chr3 118164600 118164747 -41435036 + B1_Mur3 SINE Alu 1 143 -6 2 1486 21 0 0 0 chr3 118164929 118164950 -41434833 + AT_rich Low_complexity Low_complexity 1 21 0 2 1486 499 289 1 63 chr3 118166084 118166278 -41433505 - L1MB1 LINE L1 -93 6096 5913 2 1486 347 307 102 0 chr3 118166281 118166418 -41433365 + ID_B1 SINE B4 54 204 -20 2 1486 1170 293 69 37 chr3 118166424 118167012 -41432771 - L1MB1 LINE L1 -281 5887 5269 2 1486 270 0 0 0 chr3 118167012 118167042 -41432741 + (TCTG)n Simple_repeat Simple_repeat 2 31 0 2 1486 256 262 44 69 chr3 118167042 118167089 -41432694 - L1MB1 LINE L1 -872 5268 5227 2 1486 322 176 71 78 chr3 118167185 118167339 -41432444 + L1M2 LINE L1 4264 4416 -1727 2 1486 23 33 0 0 chr3 118169711 118169741 -41430042 + AT_rich Low_complexity Low_complexity 1 30 0 2 1486 428 51 17 0 chr3 118169793 118169852 -41429931 + (CATA)n Simple_repeat Simple_repeat 3 62 0 2 1486 229 290 16 0 chr3 118169852 118169910 -41429873 + B4 SINE B4 228 286 -6 2 1486 408 40 0 0 chr3 118171069 118171119 -41428664 + (TG)n Simple_repeat Simple_repeat 2 51 0 2 1486 422 331 82 58 chr3 118171423 118171680 -41428103 - MER102a DNA MER1_type -15 315 53 2 1486 315 237 26 13 chr3 118171813 118171890 -41427893 + B4A SINE B4 5 82 -210 2 1486 230 0 33 0 chr3 118171890 118171920 -41427863 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 2 1486 381 287 0 41 chr3 118171975 118172073 -41427710 + RSINE1 SINE B4 72 165 0 2 1486 644 330 54 18 chr3 118172599 118172821 -41426962 + B4 SINE B4 63 292 0 2 1486 290 248 9 0 chr3 118172890 118172999 -41426784 + (CA)n Simple_repeat Simple_repeat 1 110 0 2 1486 1590 97 21 4 chr3 118173413 118173652 -41426131 - Lx LINE L1 -6 6648 6406 2 1486 2423 92 36 11 chr3 118173790 118174151 -41425632 - Lx LINE L1 -248 6406 6037 2 1486 270 0 0 0 chr3 118175073 118175103 -41424680 + (CA)n Simple_repeat Simple_repeat 1 30 0 2 1486 369 0 0 0 chr3 118177012 118177053 -41422730 + (TC)n Simple_repeat Simple_repeat 2 42 0 2 1486 279 0 0 0 chr3 118177317 118177348 -41422435 + (TG)n Simple_repeat Simple_repeat 2 32 0 2 1486 542 141 31 0 chr3 118177348 118177476 -41422307 + (TA)n Simple_repeat Simple_repeat 2 133 0 2 1486 362 283 93 70 chr3 118177561 118177778 -41422005 - B4 SINE B4 0 292 82 2 1486 366 266 0 206 chr3 118181909 118182017 -41417766 + ID_B1 SINE B4 82 166 -58 2 1486 435 19 0 0 chr3 118182017 118182069 -41417714 + (TG)n Simple_repeat Simple_repeat 1 52 0 2 1486 366 266 0 206 chr3 118182069 118182135 -41417648 + ID_B1 SINE B4 167 220 -4 2 1486 1679 155 64 22 chr3 118182441 118182752 -41417031 + Lx4A LINE L1 6726 7049 -9 2 1486 533 321 28 14 chr3 118183511 118183729 -41416054 + ID_B1 SINE B4 1 221 -3 2 1486 740 257 0 0 chr3 118183907 118184051 -41415732 - B1_Mur1 SINE Alu 0 149 6 2 1486 291 326 42 109 chr3 118184051 118184068 -41415715 - B4 SINE B4 -63 225 76 2 1486 30 0 0 0 chr3 118184407 118184437 -41415346 + AT_rich Low_complexity Low_complexity 1 30 0 2 1486 4410 38 0 0 chr3 118184709 118185231 -41414552 + L1Md_F2 LINE L1 6053 6574 -8 2 1486 1605 179 11 110 chr3 118185356 118185802 -41413981 - RMER17C LTR ERVK -8 402 1 2 1486 2543 176 38 187 chr3 118188115 118189003 -41410780 + RMER6A LTR ERVK 1 756 0 2 1486 315 276 114 57 chr3 118190504 118190627 -41409156 - MamSINE1 SINE tRNA -79 211 82 2 1486 291 300 0 0 chr3 118190801 118190931 -41408852 + (TG)n Simple_repeat Simple_repeat 1 130 0 2 1486 284 314 204 0 chr3 118190935 118191072 -41408711 - RSINE1 SINE B4 0 165 1 2 1486 1285 235 73 35 chr3 118191397 118191737 -41408046 - ORR1E LTR MaLR -6 353 1 2 1486 216 0 0 0 chr3 118191752 118191776 -41408007 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 2 1486 604 328 47 0 chr3 118192828 118192917 -41406866 - MTEa-int LTR MaLR -1379 201 106 2 1486 468 0 0 0 chr3 118192917 118192969 -41406814 + (CA)n Simple_repeat Simple_repeat 2 53 0 2 1486 604 328 47 0 chr3 118192969 118193071 -41406712 - MTEa-int LTR MaLR -1475 105 2 2 1486 892 312 72 25 chr3 118193071 118193433 -41406350 - MTEa LTR MaLR 0 379 1 2 1486 333 299 56 187 chr3 118194794 118195045 -41404738 - ID_B1 SINE B4 -6 218 1 2 1486 301 286 88 58 chr3 118195376 118195547 -41404236 + L1MEg LINE L1 1149 1324 -4760 2 1486 441 302 122 30 chr3 118196460 118196624 -41403159 + B4A SINE B4 104 282 -10 2 1486 378 0 0 0 chr3 118196635 118196677 -41403106 + (CA)n Simple_repeat Simple_repeat 2 43 0 2 1486 4272 180 60 23 chr3 118197542 118198412 -41401371 - RMER19B LTR ERVK 0 902 1 2 1486 224 277 43 43 chr3 118198452 118198569 -41401214 + B4A SINE B4 2 118 -174 2 1486 390 274 161 53 chr3 118198810 118199095 -41400688 + RMER10A LTR ERVL 122 437 -5 2 1486 518 208 85 0 chr3 118199238 118199344 -41400439 + PB1D9 SINE Alu 6 120 0 2 1486 6506 80 36 26 chr3 118199790 118200111 -41399672 + L1_Mus3 LINE L1 5665 5988 -650 2 1486 1511 32 16 11 chr3 118200111 118200298 -41399485 - B2_Mm1a SINE B2 -5 188 1 2 1486 6506 87 35 27 chr3 118200298 118200945 -41398838 + L1_Mus3 LINE L1 5989 6618 -20 2 1486 823 123 13 0 chr3 118200971 118201125 -41398658 + (TA)n Simple_repeat Simple_repeat 2 157 0 2 1486 846 284 5 33 chr3 118201171 118201386 -41398397 - B3 SINE B2 -5 211 3 2 1486 246 278 52 72 chr3 118201811 118201908 -41397875 + MER91B DNA Tip100 16 110 -80 2 1486 501 280 42 25 chr3 118201986 118202146 -41397637 + MLT1A LTR MaLR 3 167 -223 2 1486 492 154 0 0 chr3 118202146 118202237 -41397546 - Lx2B LINE L1 -5 6995 6905 2 1486 392 302 67 155 chr3 118202237 118202418 -41397365 + MLT1A LTR MaLR 168 314 -76 2 1486 222 37 0 0 chr3 118202433 118202460 -41397323 + (TTTTC)n Simple_repeat Simple_repeat 3 29 0 2 1486 455 352 64 0 chr3 118202661 118202925 -41396858 + MLT1A-int LTR MaLR 334 614 -757 2 1486 316 257 17 42 chr3 118202925 118203043 -41396740 + GA-rich Low_complexity Low_complexity 3 117 0 2 1486 444 67 0 0 chr3 118203570 118203630 -41396153 + (TCC)n Simple_repeat Simple_repeat 3 62 0 2 1486 385 320 60 28 chr3 118203673 118203856 -41395927 + MLT1A LTR MaLR 169 376 -14 2 1486 26 64 0 0 chr3 118204037 118204084 -41395699 + AT_rich Low_complexity Low_complexity 1 47 0 2 1486 21 0 0 0 chr3 118204206 118204227 -41395556 + AT_rich Low_complexity Low_complexity 1 21 0 2 1486 214 368 70 42 chr3 118205457 118205599 -41394184 - MIR SINE MIR -80 182 37 2 1486 180 315 96 53 chr3 118205624 118205718 -41394065 + MIR SINE MIR 38 135 -73 2 1486 326 355 7 41 chr3 118205913 118206060 -41393723 + B4A SINE B4 121 262 -30 2 1486 237 288 0 15 chr3 118206094 118206161 -41393622 + (CA)n Simple_repeat Simple_repeat 1 66 0 2 1486 493 292 73 15 chr3 118206744 118206949 -41392834 - ID_B1 SINE B4 -7 217 1 2 1486 1163 48 7 0 chr3 118207116 118207262 -41392521 + B1_Mus2 SINE Alu 1 147 0 2 1486 212 59 0 29 chr3 118207267 118207302 -41392481 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 2 1486 466 244 68 8 chr3 118208004 118208136 -41391647 + MER5B DNA MER1_type 10 149 -29 2 1486 213 289 47 35 chr3 118208406 118208492 -41391291 + RSINE1 SINE B4 75 161 -4 2 1486 509 269 33 8 chr3 118209781 118209901 -41389882 + RSINE1 SINE B4 3 125 -40 2 1486 22 56 0 0 chr3 118210087 118210123 -41389660 + AT_rich Low_complexity Low_complexity 1 36 0 2 1486 203 139 0 44 chr3 118210750 118210795 -41388988 + T-rich Low_complexity Low_complexity 6 48 0 2 1486 405 389 12 36 chr3 118211731 118211899 -41387884 - RSINE1 SINE B4 -1 164 1 2 1486 509 30 15 0 chr3 118212592 118212659 -41387124 + (TAGA)n Simple_repeat Simple_repeat 3 70 0 2 1486 207 0 0 0 chr3 118212699 118212722 -41387061 + (TG)n Simple_repeat Simple_repeat 2 24 0 2 1486 514 358 75 28 chr3 118212748 118213001 -41386782 - B4A SINE B4 -17 275 11 2 1486 189 0 0 0 chr3 118215834 118215855 -41383928 + (TAAA)n Simple_repeat Simple_repeat 1 21 0 2 1486 251 214 82 12 chr3 118216260 118216345 -41383438 + Lx4B LINE L1 6965 7055 -3 2 1486 23 0 0 0 chr3 118217010 118217033 -41382750 + AT_rich Low_complexity Low_complexity 1 23 0 2 1486 24 32 0 0 chr3 118217282 118217313 -41382470 + AT_rich Low_complexity Low_complexity 1 31 0 2 1486 203 167 0 0 chr3 118217373 118217415 -41382368 + A-rich Low_complexity Low_complexity 4 45 0 2 1486 3742 191 38 21 chr3 118217528 118218409 -41381374 - Lx4B LINE L1 -75 6925 6030 2 1486 186 133 0 0 chr3 118218714 118218744 -41381039 + (A)n Simple_repeat Simple_repeat 1 30 0 2 1486 979 301 73 25 chr3 118218865 118219220 -41380563 - MTE2a LTR MaLR -7 372 1 2 1486 702 269 52 0 chr3 118220171 118220364 -41379419 - MTD LTR MaLR -2 417 215 2 1486 687 297 18 49 chr3 118220462 118220685 -41379098 - MTD LTR MaLR -198 221 6 2 1486 336 238 0 0 chr3 118220690 118220774 -41379009 + (CA)n Simple_repeat Simple_repeat 2 85 0 2 1486 313 364 82 59 chr3 118221696 118221915 -41377868 + MER58A DNA MER1_type 1 224 0 2 1486 225 83 0 0 chr3 118222947 118222983 -41376800 + (T)n Simple_repeat Simple_repeat 1 36 0 2 1486 194 435 27 20 chr3 118223538 118223688 -41376095 + L2b LINE L2 3225 3375 0 2 1486 23 0 0 0 chr3 118224000 118224023 -41375760 + AT_rich Low_complexity Low_complexity 1 23 0 2 1486 239 228 0 81 chr3 118224283 118224407 -41375376 + (CACAC)n Simple_repeat Simple_repeat 4 117 0 2 1486 180 0 0 0 chr3 118224934 118224954 -41374829 + (T)n Simple_repeat Simple_repeat 1 20 0 2 1486 277 24 48 0 chr3 118225151 118225193 -41374590 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 3 1486 188 299 136 11 chr3 118225269 118225357 -41374426 + MIR SINE MIR 90 188 -74 3 1487 234 230 58 13 chr3 118226977 118227131 -41372652 + (TA)n Simple_repeat Simple_repeat 1 161 0 3 1487 251 278 91 3 chr3 118227137 118227230 -41372553 - B3A SINE B2 -35 181 81 3 1487 273 287 26 9 chr3 118228366 118228482 -41371301 - L1M5 LINE L1 -797 5376 5259 3 1487 431 360 40 13 chr3 118228618 118228767 -41371016 - RSINE1 SINE B4 -1 164 12 3 1487 445 345 13 33 chr3 118229221 118229371 -41370412 - RSINE1 SINE B4 -15 150 4 3 1487 609 322 122 59 chr3 118229447 118230127 -41369656 - L1M5 LINE L1 -2218 3928 3206 3 1487 360 0 0 0 chr3 118230154 118230194 -41369589 + (TTTA)n Simple_repeat Simple_repeat 3 42 0 3 1487 1052 113 6 6 chr3 118230194 118230354 -41369429 - B2_Mm1t SINE B2 -33 160 1 3 1487 232 284 52 45 chr3 118230391 118230546 -41369237 - L1M5 LINE L1 -2981 3165 3010 3 1487 330 217 38 38 chr3 118230981 118231139 -41368644 + (TCTA)n Simple_repeat Simple_repeat 3 160 0 3 1487 411 359 67 21 chr3 118231631 118231961 -41367822 - L1M5 LINE L1 -2832 3314 2970 3 1487 1912 168 6 15 chr3 118232104 118232443 -41367340 - Lx2B LINE L1 -9 6991 6656 3 1487 218 67 0 0 chr3 118232443 118232473 -41367310 - B3A SINE B2 -163 35 6 3 1487 22 88 0 0 chr3 118232900 118232957 -41366826 + AT_rich Low_complexity Low_complexity 1 57 0 3 1487 191 395 22 15 chr3 118233207 118233343 -41366440 + MIR SINE MIR 37 173 -89 3 1487 21 36 0 0 chr3 118234205 118234233 -41365550 + AT_rich Low_complexity Low_complexity 1 28 0 3 1487 270 0 0 0 chr3 118234296 118234326 -41365457 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 3 1487 252 342 0 0 chr3 118234334 118234407 -41365376 - PB1D10 SINE Alu -17 100 28 3 1487 3231 228 31 13 chr3 118235386 118236092 -41363691 + Lx5 LINE L1 6327 7045 -5 3 1487 284 280 179 56 chr3 118236123 118236676 -41363107 + L1M4 LINE L1 3028 3648 -2498 3 1487 257 346 67 0 chr3 118236751 118236855 -41362928 + PB1 SINE Alu 1 111 -16 3 1487 329 311 17 75 chr3 118237153 118237327 -41362456 - RSINE1 SINE B4 0 165 2 3 1487 312 27 0 0 chr3 118237475 118237512 -41362271 + (CA)n Simple_repeat Simple_repeat 2 38 0 3 1487 270 176 0 0 chr3 118238437 118238488 -41361295 + (TA)n Simple_repeat Simple_repeat 1 51 0 3 1487 25 0 0 0 chr3 118238621 118238646 -41361137 + AT_rich Low_complexity Low_complexity 1 25 0 3 1487 21 0 0 0 chr3 118240117 118240138 -41359645 + AT_rich Low_complexity Low_complexity 1 21 0 3 1487 216 122 0 0 chr3 118240446 118240487 -41359296 + (T)n Simple_repeat Simple_repeat 1 41 0 3 1487 401 0 20 0 chr3 118241002 118241051 -41358732 + (TTTTG)n Simple_repeat Simple_repeat 1 50 0 3 1487 414 301 22 29 chr3 118241051 118241188 -41358595 - B1F SINE Alu -13 136 1 3 1487 21 0 0 0 chr3 118241341 118241362 -41358421 + AT_rich Low_complexity Low_complexity 1 21 0 3 1487 432 0 0 0 chr3 118241399 118241447 -41358336 + (CA)n Simple_repeat Simple_repeat 2 49 0 3 1487 242 309 108 9 chr3 118241986 118242097 -41357686 - MER20B DNA MER1_type -606 177 56 3 1487 549 318 38 35 chr3 118242366 118242520 -41357263 + L1MB7 LINE L1 5382 5534 -644 3 1487 396 0 0 0 chr3 118242520 118242564 -41357219 + (CA)n Simple_repeat Simple_repeat 1 44 0 3 1487 549 318 38 35 chr3 118242564 118242754 -41357029 + L1MB7 LINE L1 5535 5727 -451 3 1487 448 312 94 18 chr3 118242782 118243112 -41356671 + L1MB7 LINE L1 5829 6183 -1 3 1487 404 280 127 13 chr3 118243177 118243405 -41356378 + L1MC3 LINE L1 5724 5977 -1808 3 1487 521 261 69 103 chr3 118243439 118243614 -41356169 - B3A SINE B2 -10 185 17 3 1487 1081 277 72 20 chr3 118243644 118244046 -41355737 + L1MC3 LINE L1 6020 6442 -1343 3 1487 363 23 0 0 chr3 118244370 118244414 -41355369 + (CA)n Simple_repeat Simple_repeat 1 44 0 3 1487 394 98 35 70 chr3 118244405 118244547 -41355236 + (CAGAGA)n Simple_repeat Simple_repeat 6 142 0 3 1487 296 268 115 14 chr3 118244573 118244781 -41355002 + L1MC3 LINE L1 6884 7112 -673 3 1487 295 336 37 12 chr3 118244938 118245182 -41354601 + L1MC3 LINE L1 7145 7394 -391 3 1487 334 306 116 69 chr3 118245722 118245999 -41353784 - ORR1E LTR MaLR -49 310 21 3 1487 372 345 19 88 chr3 118246616 118246775 -41353008 + RSINE1 SINE B4 17 164 -1 3 1487 3925 192 33 31 chr3 118246944 118247739 -41352044 - Lx5 LINE L1 -123 6927 6132 3 1487 3101 118 0 2 chr3 118247987 118248437 -41351346 + Lx2 LINE L1 6186 6634 -363 3 1487 1383 125 4 33 chr3 118248437 118248677 -41351106 + Lx2 LINE L1 6765 6997 0 3 1487 296 330 10 0 chr3 118249255 118249358 -41350425 + MIR SINE MIR 159 262 0 3 1487 337 248 104 104 chr3 118249532 118249753 -41350030 - Lx8 LINE L1 0 7473 7253 3 1487 491 211 54 54 chr3 118251492 118251622 -41348161 - B1_Mur1 SINE Alu -12 137 8 3 1487 504 0 0 0 chr3 118252440 118252496 -41347287 + (TC)n Simple_repeat Simple_repeat 1 56 0 3 1487 627 211 30 8 chr3 118253079 118253213 -41346570 + B1_Mur1 SINE Alu 5 141 -8 3 1487 218 345 24 89 chr3 118253248 118253372 -41346411 - RSINE1 SINE B4 0 165 50 3 1487 210 339 0 0 chr3 118253908 118253967 -41345816 + B1F SINE Alu 87 145 -4 3 1487 946 202 42 5 chr3 118254222 118254436 -41345347 + Lx5 LINE L1 6825 7046 -4 3 1487 361 354 96 30 chr3 118254630 118254901 -41344882 + B4 SINE B4 3 291 -1 3 1487 275 0 29 0 chr3 118254940 118254975 -41344808 + (TC)n Simple_repeat Simple_repeat 1 36 0 3 1487 611 120 35 23 chr3 118254975 118255146 -41344637 + (CA)n Simple_repeat Simple_repeat 2 174 0 3 1487 270 196 40 30 chr3 118255157 118255257 -41344526 + (CA)n Simple_repeat Simple_repeat 2 102 0 3 1487 240 111 0 0 chr3 118255948 118255984 -41343799 + (TG)n Simple_repeat Simple_repeat 1 36 0 3 1487 239 233 33 0 chr3 118256387 118256447 -41343336 + PB1D9 SINE Alu 42 103 -17 3 1487 480 73 62 0 chr3 118256447 118256543 -41343240 + (CAGA)n Simple_repeat Simple_repeat 3 104 0 3 1487 294 306 173 24 chr3 118257223 118257350 -41342433 + B4A SINE B4 4 149 -143 3 1487 274 317 111 37 chr3 118257784 118257974 -41341809 + B4 SINE B4 3 206 -86 3 1487 630 0 0 0 chr3 118258466 118258536 -41341247 + (TC)n Simple_repeat Simple_repeat 1 70 0 3 1487 408 40 0 0 chr3 118258536 118258585 -41341198 + (CA)n Simple_repeat Simple_repeat 1 50 0 3 1487 441 349 52 7 chr3 118259088 118259241 -41340542 + B3A SINE B2 2 161 -37 3 1487 273 267 17 0 chr3 118259636 118259696 -41340087 - ID SINE ID -161 63 3 3 1487 383 413 43 13 chr3 118259738 118259971 -41339812 - LTR16A LTR ERVL -180 271 32 3 1487 691 152 11 0 chr3 118260209 118260387 -41339396 + GA-rich Low_complexity Low_complexity 1 180 0 3 1487 426 20 0 0 chr3 118260528 118260579 -41339204 + (TG)n Simple_repeat Simple_repeat 2 52 0 3 1487 350 346 27 16 chr3 118260840 118261028 -41338755 - Ricksha_c DNA MuDR -1514 534 345 3 1487 182 329 13 13 chr3 118261100 118261177 -41338606 - MIRc SINE MIR -25 243 167 3 1487 195 42 0 0 chr3 118263408 118263432 -41336351 + (CAA)n Simple_repeat Simple_repeat 2 25 0 3 1487 246 128 0 0 chr3 118263699 118263738 -41336045 + (TTA)n Simple_repeat Simple_repeat 1 39 0 3 1487 231 156 43 43 chr3 118264204 118264251 -41335532 + Charlie6 DNA MER1_type 295 341 -3159 3 1487 21 36 0 0 chr3 118264310 118264338 -41335445 + AT_rich Low_complexity Low_complexity 1 28 0 3 1487 1079 168 26 49 chr3 118264399 118264625 -41335158 + URR1B DNA MER1_type 2 222 -3 3 1487 534 31 0 0 chr3 118266098 118266162 -41333621 + (CCCCCT)n Simple_repeat Simple_repeat 2 65 0 3 1487 1722 138 28 3 chr3 118269154 118269437 -41330346 + Lx4A LINE L1 6765 7054 -4 3 1487 285 230 358 44 chr3 118270091 118270295 -41329488 + B4 SINE B4 2 269 -23 3 1487 423 68 0 0 chr3 118270295 118270354 -41329429 + (CA)n Simple_repeat Simple_repeat 1 59 0 3 1487 4309 37 0 0 chr3 118271070 118271579 -41328204 + L1Md_T LINE L1 6073 6581 -1 3 1487 41 21 0 0 chr3 118271709 118271757 -41328026 + AT_rich Low_complexity Low_complexity 1 48 0 3 1487 222 150 0 0 chr3 118271892 118271932 -41327851 + (TGAA)n Simple_repeat Simple_repeat 3 42 0 3 1487 508 294 28 14 chr3 118271951 118272096 -41327687 + RSINE1 SINE B4 2 148 -17 3 1487 1031 71 7 0 chr3 118272106 118272260 -41327523 + (CA)n Simple_repeat Simple_repeat 2 156 0 3 1487 639 282 6 24 chr3 118273881 118274048 -41325735 + RSINE1 SINE B4 2 165 0 3 1487 602 320 62 11 chr3 118274496 118274771 -41325012 - Lx7 LINE L1 -258 7215 6927 3 1487 29403 4 0 0 chr3 118274794 118281161 -41318622 - L1Md_A LINE L1 0 6582 215 3 1487 730 290 20 6 chr3 118281214 118281476 -41318307 - Lx7 LINE L1 -627 6846 6577 3 1487 253 295 12 82 chr3 118281610 118281695 -41318088 - B4 SINE B4 0 292 214 3 1487 711 316 12 10 chr3 118281713 118281921 -41317862 - B4 SINE B4 -69 223 1 3 1487 436 136 0 0 chr3 118282394 118282460 -41317323 + B3A SINE B2 3 68 -130 3 1487 183 114 0 0 chr3 118282470 118282505 -41317278 + (T)n Simple_repeat Simple_repeat 1 35 0 3 1487 44 0 0 0 chr3 118283090 118283134 -41316649 + AT_rich Low_complexity Low_complexity 1 44 0 3 1487 2620 149 144 21 chr3 118283150 118283670 -41316113 - RLTR31A_Mm LTR ERVK 0 584 1 3 1487 22 0 0 0 chr3 118284057 118284079 -41315704 + AT_rich Low_complexity Low_complexity 1 22 0 3 1487 637 306 91 5 chr3 118284816 118285013 -41314770 + B4A SINE B4 1 214 -78 3 1487 2550 158 79 10 chr3 118285132 118285626 -41314157 - RLTR11A LTR ERVK 0 528 1 3 1487 190 343 59 0 chr3 118285626 118285721 -41314062 + MIR SINE MIR 66 166 -96 3 1487 3275 96 30 0 chr3 118286006 118286476 -41313307 + L1_Mus3 LINE L1 6155 6638 0 3 1487 724 99 49 7 chr3 118286807 118286950 -41312833 + RMER17B LTR ERVK 312 460 -498 3 1487 24 0 0 0 chr3 118287107 118287131 -41312652 + AT_rich Low_complexity Low_complexity 1 24 0 3 1487 4231 119 3 2 chr3 118287134 118287759 -41312024 - L1_Mus3 LINE L1 -10 6628 6003 3 1487 405 0 0 0 chr3 118287772 118287817 -41311966 + (CA)n Simple_repeat Simple_repeat 1 45 0 3 1487 383 0 21 0 chr3 118288863 118288910 -41310873 + (TA)n Simple_repeat Simple_repeat 1 48 0 3 1487 897 303 100 35 chr3 118289401 118289880 -41309903 - MER34A1 LTR ERV1 -75 512 3 3 1487 591 112 0 0 chr3 118290471 118290560 -41309223 + (GAAA)n Simple_repeat Simple_repeat 2 90 0 4 1487 213 39 0 0 chr3 118290832 118290858 -41308925 + (CA)n Simple_repeat Simple_repeat 1 26 0 4 1487 722 251 30 6 chr3 118291321 118291489 -41308294 - Lx7 LINE L1 -492 7204 7033 4 1487 744 237 57 125 chr3 118291488 118291601 -41308182 + Lx7 LINE L1 7234 7347 -349 4 1487 1335 31 0 0 chr3 118291601 118291761 -41308022 + (TTCC)n Simple_repeat Simple_repeat 2 161 0 4 1487 744 237 57 125 chr3 118291761 118292086 -41307697 + Lx7 LINE L1 7348 7642 -54 4 1487 575 301 48 85 chr3 118292337 118292499 -41307284 + B3 SINE B2 4 165 -51 4 1487 486 83 0 0 chr3 118292499 118292571 -41307212 + (CA)n Simple_repeat Simple_repeat 2 73 0 4 1487 383 301 48 85 chr3 118292571 118292597 -41307186 + B2_Mm2 SINE B2 160 185 -10 4 1487 345 359 41 23 chr3 118294616 118294787 -41304996 + L1MEc LINE L1 110 283 -6117 4 1487 935 259 203 7 chr3 118294864 118294881 -41304902 - ORR1D2 LTR MaLR -13 357 342 4 1487 375 23 0 0 chr3 118294881 118294925 -41304858 + (TGG)n Simple_repeat Simple_repeat 3 46 0 4 1487 935 259 203 7 chr3 118294925 118295203 -41304580 - ORR1D2 LTR MaLR -29 341 4 4 1487 316 304 0 25 chr3 118295532 118295613 -41304170 + L1MEc LINE L1 288 366 -6034 4 1487 631 271 92 38 chr3 118295715 118296007 -41303776 + L1MEc LINE L1 546 853 -5547 4 1487 362 241 144 46 chr3 118296185 118296359 -41303424 + L1MEc LINE L1 1272 1462 -4938 4 1487 632 276 98 29 chr3 118296394 118296599 -41303184 + ID_B1 SINE B4 1 219 -5 4 1487 1412 174 10 26 chr3 118296608 118296914 -41302869 + RMER1B Other Other 762 1062 -4 4 1487 245 220 196 27 chr3 118297043 118297066 -41302717 + RMER15 LTR ERVL 332 362 -213 4 1487 273 109 0 0 chr3 118297066 118297112 -41302671 + (TG)n Simple_repeat Simple_repeat 1 46 0 4 1487 245 220 196 27 chr3 118297112 118297200 -41302583 + RMER15 LTR ERVL 363 462 -113 4 1487 381 58 0 0 chr3 118297204 118297256 -41302527 + (CA)n Simple_repeat Simple_repeat 1 52 0 4 1487 495 0 0 0 chr3 118297256 118297310 -41302473 + (GA)n Simple_repeat Simple_repeat 2 56 0 4 1487 528 152 0 0 chr3 118299187 118299286 -41300497 + (CA)n Simple_repeat Simple_repeat 2 100 0 4 1487 794 295 47 14 chr3 118299286 118299499 -41300284 + B4A SINE B4 73 292 0 4 1487 303 222 0 0 chr3 118299580 118299661 -41300122 + GA-rich Low_complexity Low_complexity 2 82 0 4 1487 354 98 0 0 chr3 118299947 118299998 -41299785 + (T)n Simple_repeat Simple_repeat 1 51 0 4 1487 1194 62 0 0 chr3 118299998 118300144 -41299639 - B1_Mus2 SINE Alu 0 147 2 4 1487 5807 75 51 1 chr3 118300296 118301140 -41298643 - L1_Mus1 LINE L1 0 6567 5648 4 1487 183 80 0 0 chr3 118301140 118301165 -41298618 + (T)n Simple_repeat Simple_repeat 1 25 0 4 1487 1271 82 5 37 chr3 118301169 118301358 -41298425 - L1_Mus1 LINE L1 -1 6566 6384 4 1487 888 347 25 22 chr3 118301923 118302241 -41297542 + MLT1A LTR MaLR 19 337 -37 4 1487 443 133 47 8 chr3 118302241 118302370 -41297413 + (TA)n Simple_repeat Simple_repeat 2 135 0 4 1487 813 232 42 23 chr3 118302428 118302644 -41297139 - Lx4A LINE L1 -24 7034 6815 4 1487 240 35 0 0 chr3 118302800 118302829 -41296954 + (GA)n Simple_repeat Simple_repeat 2 30 0 4 1487 3378 33 5 0 chr3 118302871 118303265 -41296518 - MTA_Mm LTR MaLR 0 396 1 4 1487 26 50 0 0 chr3 118307345 118307385 -41292398 + AT_rich Low_complexity Low_complexity 1 40 0 4 1487 243 272 76 0 chr3 118307418 118307510 -41292273 - L1M4b LINE L1 -6050 1284 1186 4 1487 311 61 29 43 chr3 118307540 118307609 -41292174 + (TTTTG)n Simple_repeat Simple_repeat 3 70 0 4 1487 699 321 113 26 chr3 118307799 118308122 -41291661 - L1M4b LINE L1 -6160 1174 809 4 1487 6629 56 2 2 chr3 118308122 118308961 -41290822 - L1Md_F2 LINE L1 0 6582 5744 4 1487 699 321 113 26 chr3 118308961 118309177 -41290606 - L1M4b LINE L1 -6526 808 588 4 1487 405 405 25 95 chr3 118309292 118309649 -41290134 - L1M4b LINE L1 -6860 474 143 4 1487 399 171 0 0 chr3 118309649 118309725 -41290058 + CT-rich Low_complexity Low_complexity 3 78 0 4 1487 344 22 0 22 chr3 118309910 118309956 -41289827 + (TC)n Simple_repeat Simple_repeat 2 46 0 4 1487 369 0 0 0 chr3 118309956 118309996 -41289787 + (TG)n Simple_repeat Simple_repeat 2 42 0 4 1487 250 350 9 74 chr3 118310004 118310112 -41289671 - RSINE1 SINE B4 -22 143 43 4 1487 333 0 0 0 chr3 118311062 118311099 -41288684 + (CA)n Simple_repeat Simple_repeat 2 38 0 4 1487 616 371 35 25 chr3 118311624 118311906 -41287877 - B4A SINE B4 -7 285 1 4 1487 1368 255 84 17 chr3 118312120 118312658 -41287125 - Lx9 LINE L1 -4 7640 7067 4 1487 717 97 0 0 chr3 118312776 118312879 -41286904 + (TC)n Simple_repeat Simple_repeat 1 103 0 4 1487 1198 54 0 0 chr3 118312890 118313037 -41286746 - B1_Mus1 SINE Alu -1 147 1 4 1487 313 275 92 0 chr3 118314864 118314973 -41284810 - MLT1B LTR MaLR -10 380 262 4 1487 435 267 50 0 chr3 118315018 118315138 -41284645 - MLT1B LTR MaLR -262 128 3 4 1487 296 265 35 61 chr3 118315162 118315391 -41284392 + L1M5 LINE L1 5624 5846 -278 4 1487 5297 68 3 9 chr3 118315998 118316696 -41283087 - L1_Mus3 LINE L1 -6 6632 5939 4 1487 17432 69 7 5 chr3 118316711 118319880 -41279903 - L1Md_F2 LINE L1 -12 6570 3395 4 1487 355 314 19 10 chr3 118320046 118320149 -41279634 - B1F2 SINE Alu -44 105 2 4 1487 378 0 0 0 chr3 118320736 118320778 -41279005 + (TC)n Simple_repeat Simple_repeat 2 43 0 4 1487 261 0 0 0 chr3 118320778 118320806 -41278977 + (TG)n Simple_repeat Simple_repeat 2 30 0 4 1487 196 369 80 57 chr3 118320979 118321278 -41278505 + L2b LINE L2 3121 3426 0 4 1487 770 329 8 21 chr3 118322332 118322568 -41277215 + B4 SINE B4 56 288 -4 4 1487 233 378 0 0 chr3 118322793 118322883 -41276900 + MER96B DNA hAT 2 91 -326 4 1487 450 0 0 0 chr3 118323841 118323891 -41275892 + (TG)n Simple_repeat Simple_repeat 2 51 0 4 1487 801 0 0 0 chr3 118324058 118324147 -41275636 + (GAAA)n Simple_repeat Simple_repeat 2 90 0 4 1487 194 0 39 0 chr3 118324711 118324737 -41275046 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 4 1487 412 195 65 0 chr3 118324748 118324825 -41274958 - B1_Mus2 SINE Alu -52 95 14 4 1487 285 321 49 0 chr3 118324761 118324842 -41274941 - MT2B LTR ERVL -362 239 155 4 1487 404 283 182 13 chr3 118324899 118325053 -41274730 - B3A SINE B2 -18 180 1 4 1487 225 355 128 32 chr3 118325530 118325748 -41274035 + L2a LINE L2 3180 3418 -8 4 1487 1040 216 5 9 chr3 118325947 118326167 -41273616 + URR1B DNA MER1_type 2 220 -5 4 1487 337 292 122 78 chr3 118325950 118326221 -41273562 - CYRA11_Mm Unknown Y-chromosome -235 382 100 4 1487 315 321 42 35 chr3 118327608 118327750 -41272033 + MIR SINE MIR 15 157 -105 4 1487 1551 262 52 50 chr3 118328021 118328544 -41271239 + RMER5 LTR ERV1 1 524 -10 4 1487 344 111 37 12 chr3 118328593 118328675 -41271108 + (CA)n Simple_repeat Simple_repeat 1 84 0 4 1487 300 154 0 0 chr3 118328688 118328740 -41271043 + GA-rich Low_complexity Low_complexity 3 54 0 4 1487 464 200 38 0 chr3 118330038 118330143 -41269640 + Lx8 LINE L1 7154 7262 -211 4 1487 891 304 42 65 chr3 118330315 118330553 -41269230 - RMER5 LTR ERV1 -12 522 287 4 1487 1058 90 0 20 chr3 118330553 118330566 -41269217 - B1_Mus1 SINE Alu -1 147 137 4 1487 769 38 19 0 chr3 118330566 118330671 -41269112 + (TTTTC)n Simple_repeat Simple_repeat 4 110 0 4 1487 1058 90 0 20 chr3 118330671 118330805 -41268978 - B1_Mus1 SINE Alu -12 136 3 4 1487 891 304 42 65 chr3 118330805 118330949 -41268834 - RMER5 LTR ERV1 -248 286 149 4 1487 226 227 0 0 chr3 118330961 118331005 -41268778 + (TATG)n Simple_repeat Simple_repeat 1 44 0 4 1487 427 308 82 68 chr3 118331035 118331314 -41268469 - MER34A LTR ERV1 -49 522 240 4 1487 368 254 144 40 chr3 118332043 118332244 -41267539 - RLTR15 LTR ERVK -18 341 120 4 1487 439 223 15 51 chr3 118332290 118332427 -41267356 - RLTR15 LTR ERVK -195 164 33 4 1487 858 247 127 55 chr3 118333162 118333509 -41266274 + MTD LTR MaLR 18 389 -30 4 1487 189 121 0 0 chr3 118333512 118333545 -41266238 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 4 1487 759 228 58 21 chr3 118334329 118334517 -41265266 - B3 SINE B2 -16 200 6 4 1487 22 0 0 0 chr3 118334517 118334539 -41265244 + AT_rich Low_complexity Low_complexity 1 22 0 4 1487 322 325 78 33 chr3 118334768 118335113 -41264670 - L1MB1 LINE L1 -225 5964 5599 4 1487 522 70 0 0 chr3 118335380 118335451 -41264332 + (GA)n Simple_repeat Simple_repeat 1 71 0 4 1487 227 242 73 92 chr3 118335761 118335870 -41263913 - RMER4A LTR ERVK -54 412 306 4 1487 798 255 14 14 chr3 118336635 118336846 -41262937 + B3 SINE B2 2 212 -4 4 1487 1516 247 85 19 chr3 118336897 118337368 -41262415 + Lx8 LINE L1 6876 7377 -96 4 1487 4960 78 13 14 chr3 118337496 118338217 -41261566 - L1Md_F2 LINE L1 0 6582 5890 4 1487 181 317 0 32 chr3 118338553 118338615 -41261168 + L2c LINE L2 3274 3333 -54 4 1487 562 302 43 34 chr3 118339457 118339690 -41260093 + MT2A LTR ERVL 1 235 -298 4 1487 1259 116 17 0 chr3 118339970 118340151 -41259632 + B2_Mm2 SINE B2 3 186 -9 4 1487 553 321 28 23 chr3 118340372 118340586 -41259197 + MT2A LTR ERVL 245 459 -74 4 1487 228 351 67 7 chr3 118341305 118341440 -41258343 - L2a LINE L2 -1 3425 3283 4 1487 22 35 0 0 chr3 118341875 118341904 -41257879 + AT_rich Low_complexity Low_complexity 1 29 0 4 1487 1152 61 7 0 chr3 118342809 118342956 -41256827 - B1_Mus1 SINE Alu 0 148 1 4 1487 260 250 100 77 chr3 118342967 118343097 -41256686 - B1F SINE Alu -8 141 9 4 1487 1524 68 13 13 chr3 118343212 118343436 -41256347 - L1_Mus3 LINE L1 0 6638 6415 4 1487 342 115 0 0 chr3 118344304 118344356 -41255427 + (TTA)n Simple_repeat Simple_repeat 3 54 0 4 1487 23 0 0 0 chr3 118344797 118344820 -41254963 + AT_rich Low_complexity Low_complexity 1 23 0 4 1487 452 307 11 99 chr3 118344835 118345016 -41254767 - RSINE1 SINE B4 0 165 1 4 1487 775 305 94 18 chr3 118345103 118345604 -41254179 - L1MA6 LINE L1 0 6300 5762 4 1487 6431 75 6 2 chr3 118346081 118346935 -41252848 + L1_Mus1 LINE L1 5711 6567 0 4 1487 21 36 0 0 chr3 118348474 118348502 -41251281 + AT_rich Low_complexity Low_complexity 1 28 0 4 1487 258 250 29 29 chr3 118349513 118349577 -41250206 + MIR3 SINE MIR 94 158 -50 4 1487 342 0 0 0 chr3 118349577 118349615 -41250168 + (TG)n Simple_repeat Simple_repeat 2 39 0 4 1487 594 0 0 0 chr3 118350104 118350170 -41249613 + (TA)n Simple_repeat Simple_repeat 2 67 0 4 1487 291 355 0 0 chr3 118350175 118350251 -41249532 - B3A SINE B2 -122 76 1 4 1487 846 161 15 0 chr3 118350271 118350408 -41249375 + B1_Mus1 SINE Alu 1 139 -9 4 1487 639 78 0 0 chr3 118350412 118350502 -41249281 + (CA)n Simple_repeat Simple_repeat 1 90 0 5 1487 226 378 78 0 chr3 118351791 118351881 -41247902 + PB1D10 SINE Alu 16 112 -5 5 1487 198 167 0 0 chr3 118351898 118351934 -41247849 + GA-rich Low_complexity Low_complexity 1 36 0 5 1487 391 250 170 55 chr3 118352964 118353146 -41246637 + ID_B1 SINE B4 5 207 -17 5 1487 1569 43 10 5 chr3 118353323 118353532 -41246251 - L1Md_F3 LINE L1 -2 6582 6373 5 1487 2618 72 33 3 chr3 118353650 118354013 -41245770 + Lx LINE L1 6281 6654 0 5 1487 24 0 0 0 chr3 118355222 118355246 -41244537 + AT_rich Low_complexity Low_complexity 1 24 0 5 1487 598 279 0 0 chr3 118355404 118355533 -41244250 + B3A SINE B2 22 150 -48 5 1487 198 0 0 0 chr3 118355841 118355863 -41243920 + (TTTG)n Simple_repeat Simple_repeat 1 22 0 5 1487 228 350 78 24 chr3 118355872 118356039 -41243744 - MER21B LTR ERV1 -345 518 343 5 1487 1061 109 0 0 chr3 118357297 118357444 -41242339 + B1_Mm SINE Alu 1 147 0 5 1487 390 86 10 70 chr3 118357446 118357546 -41242237 + A-rich Low_complexity Low_complexity 3 96 0 5 1487 373 339 67 9 chr3 118357732 118357955 -41241828 + L3b LINE CR1 3 238 -244 5 185 210 213 181 0 chr3 118357976 118358070 -41241713 + L3b LINE CR1 206 316 -166 5 1488 204 40 0 0 chr3 118358106 118358131 -41241652 + (TA)n Simple_repeat Simple_repeat 1 25 0 5 1488 2171 259 63 13 chr3 118359604 118360234 -41239549 - Lx7 LINE L1 -497 7199 6538 5 1488 729 34 0 0 chr3 118360251 118360339 -41239444 + (TA)n Simple_repeat Simple_repeat 1 88 0 5 1488 992 124 0 0 chr3 118360339 118360484 -41239299 - B2_Mm2 SINE B2 -49 146 2 5 1488 207 114 0 0 chr3 118360542 118360577 -41239206 + (T)n Simple_repeat Simple_repeat 1 35 0 5 1488 1071 139 20 25 chr3 118360669 118360868 -41238915 - Lx3C LINE L1 -2 6974 6777 5 1488 338 312 25 0 chr3 118360905 118360985 -41238798 - RSINE1 SINE B4 -72 93 12 5 1488 362 339 71 0 chr3 118363952 118364079 -41235704 + ID_B1 SINE B4 84 219 -5 5 1488 603 27 0 0 chr3 118364606 118364679 -41235104 + (TTATA)n Simple_repeat Simple_repeat 1 73 0 5 1488 703 308 50 0 chr3 118364891 118365089 -41234694 + ID_B1 SINE B4 8 215 -9 5 1488 344 301 7 36 chr3 118366168 118366306 -41233477 + CT-rich Low_complexity Low_complexity 2 135 0 5 1488 266 318 91 0 chr3 118366379 118366413 -41233370 - ID_B1 SINE B4 -23 201 82 5 1488 274 316 26 0 chr3 118366413 118366489 -41233294 - PB1D10 SINE Alu -39 78 1 5 1488 22 88 0 0 chr3 118366948 118367005 -41232778 + AT_rich Low_complexity Low_complexity 1 57 0 5 1488 1045 101 142 0 chr3 118368517 118368686 -41231097 - B2_Mm2 SINE B2 -2 193 1 5 1488 581 330 35 21 chr3 118369013 118369295 -41230488 - B4A SINE B4 -5 287 2 5 1488 304 40 40 0 chr3 118369755 118369805 -41229978 + (TTTTTG)n Simple_repeat Simple_repeat 3 54 0 5 1488 545 280 25 0 chr3 118370948 118371105 -41228678 - B3 SINE B2 -7 209 49 5 1488 593 230 80 12 chr3 118371105 118371268 -41228515 + MTC LTR MaLR 248 421 0 5 1488 1794 92 62 4 chr3 118371317 118371590 -41228193 - L1_Mus2 LINE L1 -2 6564 6276 5 1488 698 62 10 0 chr3 118372072 118372168 -41227615 + (TA)n Simple_repeat Simple_repeat 2 98 0 5 1488 21 36 0 0 chr3 118372839 118372867 -41226916 + AT_rich Low_complexity Low_complexity 1 28 0 5 1488 369 0 0 0 chr3 118372910 118372951 -41226832 + (TC)n Simple_repeat Simple_repeat 2 42 0 5 1488 180 0 0 0 chr3 118372952 118372972 -41226811 + (CCTA)n Simple_repeat Simple_repeat 1 20 0 5 1488 1264 251 75 38 chr3 118373130 118373688 -41226095 - L1MB7 LINE L1 -1 6183 5605 5 1488 402 307 167 14 chr3 118374032 118374286 -41225497 - L1MB7 LINE L1 -1029 5117 4820 5 1488 288 0 0 0 chr3 118374286 118374318 -41225465 + (CA)n Simple_repeat Simple_repeat 2 33 0 5 1488 402 307 167 14 chr3 118374318 118374350 -41225433 - L1MB7 LINE L1 -1327 4819 4788 5 1488 1292 29 17 6 chr3 118374360 118374534 -41225249 + (TCTA)n Simple_repeat Simple_repeat 2 177 0 5 1488 252 200 125 0 chr3 118374757 118374837 -41224946 - L1MB7 LINE L1 -1713 4433 4344 5 1488 1234 255 53 17 chr3 118374910 118375265 -41224518 + MTD LTR MaLR 50 417 -2 5 1488 228 277 53 0 chr3 118375310 118375404 -41224379 - L1MD LINE L1 -484 5875 5777 5 1488 577 175 0 8 chr3 118375420 118375541 -41224242 - L1_Mus4 LINE L1 -6 6630 6511 5 1488 257 292 84 30 chr3 118376203 118376369 -41223414 + L1M5 LINE L1 4995 5169 -977 5 1488 24 0 0 0 chr3 118376612 118376636 -41223147 + AT_rich Low_complexity Low_complexity 1 24 0 5 1488 30 27 0 0 chr3 118378825 118378862 -41220921 + AT_rich Low_complexity Low_complexity 1 37 0 5 1488 22 0 0 0 chr3 118380925 118380947 -41218836 + AT_rich Low_complexity Low_complexity 1 22 0 5 1488 690 65 0 0 chr3 118381007 118381099 -41218684 + (GA)n Simple_repeat Simple_repeat 1 92 0 5 1488 321 309 12 0 chr3 118381935 118382016 -41217767 + ID4 SINE ID 2 83 0 5 1488 2192 79 0 0 chr3 118384645 118384937 -41214846 + ORR1A1 LTR MaLR 1 292 -54 5 1488 6666 68 2 0 chr3 118385016 118385864 -41213919 - L1_Mus1 LINE L1 -14 6553 5704 5 1488 3287 173 66 0 chr3 118385862 118386481 -41213302 + L1_Mur2 LINE L1 5027 5686 -191 5 1488 26 50 0 0 chr3 118386534 118386574 -41213209 + AT_rich Low_complexity Low_complexity 1 40 0 5 1488 25 0 0 0 chr3 118387573 118387598 -41212185 + AT_rich Low_complexity Low_complexity 1 25 0 5 1488 285 247 177 25 chr3 118387632 118387711 -41212072 - B3 SINE B2 -55 161 71 5 1488 428 112 22 0 chr3 118387986 118388075 -41211708 + (TCTA)n Simple_repeat Simple_repeat 4 94 0 5 1488 936 147 6 6 chr3 118388374 118388532 -41211251 + URR1B DNA MER1_type 43 200 -25 5 1488 698 49 0 0 chr3 118389492 118389574 -41210209 + L1Md_F2 LINE L1 5504 5585 -298 5 1488 7759 61 11 0 chr3 118389575 118390559 -41209224 + L1Md_F2 LINE L1 5587 6581 -1 5 1488 426 127 0 0 chr3 118390672 118390743 -41209040 + (CA)n Simple_repeat Simple_repeat 2 72 0 5 1488 962 300 61 14 chr3 118390768 118391298 -41208485 - L1MA6 LINE L1 -366 5931 5391 5 1488 966 118 14 0 chr3 118391322 118391466 -41208317 - B1_Mus1 SINE Alu 0 148 3 5 1488 438 202 0 0 chr3 118391468 118391552 -41208231 - B2_Mm2 SINE B2 -108 87 4 5 1488 206 214 0 0 chr3 118392807 118392849 -41206934 + CT-rich Low_complexity Low_complexity 1 42 0 5 1488 213 154 0 0 chr3 118393164 118393203 -41206580 + CT-rich Low_complexity Low_complexity 3 41 0 5 1488 273 336 37 0 chr3 118393242 118393349 -41206434 - PB1D7 SINE Alu -7 113 3 5 1488 417 20 0 0 chr3 118393356 118393406 -41206377 + (TG)n Simple_repeat Simple_repeat 2 51 0 5 1488 635 286 67 0 chr3 118393447 118393625 -41206158 - B4A SINE B4 -102 190 1 5 1488 996 249 5 0 chr3 118395821 118396030 -41203753 - B3 SINE B2 -6 210 1 5 1488 408 40 0 0 chr3 118396423 118396473 -41203310 + (TG)n Simple_repeat Simple_repeat 1 50 0 5 1488 751 324 4 75 chr3 118397075 118397302 -41202481 - B4A SINE B4 -1 291 81 5 1488 372 43 0 0 chr3 118397974 118398020 -41201763 + (GA)n Simple_repeat Simple_repeat 1 46 0 5 1488 438 88 0 0 chr3 118398218 118398286 -41201497 + (TC)n Simple_repeat Simple_repeat 1 68 0 5 1488 254 255 61 10 chr3 118398838 118398937 -41200846 + L5 LINE RTE 1391 1494 -771 5 1488 347 321 91 47 chr3 118399533 118399765 -41200018 + L2a LINE L2 3183 3424 -2 5 1488 260 150 79 0 chr3 118399865 118399992 -41199791 + (TAGA)n Simple_repeat Simple_repeat 4 140 0 5 1488 383 0 0 21 chr3 118400916 118400964 -41198819 + (TAA)n Simple_repeat Simple_repeat 1 47 0 5 1488 297 207 0 0 chr3 118401349 118401436 -41198347 + (CA)n Simple_repeat Simple_repeat 1 87 0 5 1488 261 75 0 0 chr3 118401472 118401512 -41198271 + (TTTTTG)n Simple_repeat Simple_repeat 2 41 0 5 1488 222 116 0 0 chr3 118401529 118401572 -41198211 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 5 1488 224 238 188 0 chr3 118402701 118402781 -41197002 - PB1D9 SINE Alu -1 119 25 5 1488 249 182 65 0 chr3 118402925 118403002 -41196781 + (TA)n Simple_repeat Simple_repeat 2 83 0 5 1488 245 327 0 84 chr3 118403274 118403381 -41196402 + MTEa LTR MaLR 1 98 -281 5 1488 323 219 0 10 chr3 118403510 118403607 -41196176 + CT-rich Low_complexity Low_complexity 4 99 0 5 1488 611 75 49 16 chr3 118403615 118403737 -41196046 + (TCTCTG)n Simple_repeat Simple_repeat 6 131 0 5 1488 360 0 0 0 chr3 118403734 118403774 -41196009 + (TG)n Simple_repeat Simple_repeat 1 40 0 5 1488 198 0 0 0 chr3 118403978 118404000 -41195783 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 5 1488 489 208 6 12 chr3 118404855 118405025 -41194758 + (TG)n Simple_repeat Simple_repeat 1 169 0 5 1488 255 314 14 14 chr3 118405075 118405146 -41194637 - ID4 SINE ID -11 72 2 5 1488 3272 193 26 17 chr3 118405831 118406565 -41193218 - Lx2B LINE L1 0 6997 6239 5 1488 3055 286 71 68 chr3 118406583 118407762 -41192021 - Lx5 LINE L1 -21 7029 5849 5 1488 3067 73 2 2 chr3 118407762 118408162 -41191621 + MTB LTR MaLR 1 400 0 5 1488 3055 202 34 26 chr3 118408162 118408476 -41191307 - Lx5 LINE L1 -1202 5848 5525 5 1488 339 317 20 72 chr3 118408958 118409111 -41190672 - B4A SINE B4 -147 145 1 5 1488 4801 131 7 66 chr3 118409653 118410526 -41189257 - Lx LINE L1 -6 6648 5828 5 1488 1620 0 0 0 chr3 118410526 118410769 -41189014 + (TTCCC)n Simple_repeat Simple_repeat 1 243 0 5 1488 333 47 0 0 chr3 118410769 118410812 -41188971 + (TTTC)n Simple_repeat Simple_repeat 2 44 0 5 1488 982 85 0 0 chr3 118410834 118410963 -41188820 + B1_Mus2 SINE Alu 13 141 -6 5 1488 296 24 0 24 chr3 118410977 118411019 -41188764 + (CAAAAA)n Simple_repeat Simple_repeat 2 42 0 5 1488 2697 52 0 0 chr3 118411030 118411360 -41188423 - L1_Mus1 LINE L1 -9 6558 6229 5 1488 13797 105 5 6 chr3 118411355 118413644 -41186139 - L1_Mus1 LINE L1 -467 6100 3810 5 1488 4649 171 10 7 chr3 118413735 118414566 -41185217 - L1_Mm LINE L1 -39 5844 5012 5 1488 33 56 0 0 chr3 118415053 118415107 -41184676 + AT_rich Low_complexity Low_complexity 1 54 0 6 1488 237 59 0 73 chr3 118416030 118416085 -41183698 + (CAAAA)n Simple_repeat Simple_repeat 3 53 0 6 1488 192 77 0 0 chr3 118416420 118416446 -41183337 + (TG)n Simple_repeat Simple_repeat 2 27 0 6 1488 348 355 101 0 chr3 118416447 118416616 -41183167 - B4 SINE B4 0 292 107 6 1488 35430 34 0 0 chr3 118416687 118422103 -41177680 + L1Md_T LINE L1 77 5589 -297 6 1488 8944 7 0 0 chr3 118422103 118423098 -41176685 + L1Md_T LINE L1 5590 6584 -1 6 1488 576 331 76 91 chr3 118423518 118423980 -41175803 - MLT1H LTR MaLR -14 535 81 6 1488 23 33 0 0 chr3 118425198 118425228 -41174555 + AT_rich Low_complexity Low_complexity 1 30 0 6 1488 744 283 60 0 chr3 118427321 118427505 -41172278 - B3 SINE B2 -8 208 14 6 1488 21 0 0 0 chr3 118427561 118427582 -41172201 + AT_rich Low_complexity Low_complexity 1 21 0 6 1488 5451 107 22 2 chr3 118428552 118429357 -41170426 - Lx LINE L1 -2 6652 5832 6 1488 1235 48 0 0 chr3 118432198 118432345 -41167438 - B1_Mm SINE Alu 0 147 1 6 1488 581 160 34 0 chr3 118432813 118432932 -41166851 - RMER1B Other Other -13 1053 931 6 1488 762 83 0 0 chr3 118432972 118433092 -41166691 + (TC)n Simple_repeat Simple_repeat 2 121 0 6 1488 298 361 43 11 chr3 118433953 118434138 -41165645 + MIRb SINE MIR 8 198 -70 6 1488 199 215 0 30 chr3 118434435 118434502 -41165281 + GA-rich Low_complexity Low_complexity 2 66 0 6 1488 241 324 0 0 chr3 118434516 118434587 -41165196 + GA-rich Low_complexity Low_complexity 2 72 0 6 1488 180 0 0 0 chr3 118434603 118434623 -41165160 + (CA)n Simple_repeat Simple_repeat 1 20 0 6 1488 807 67 0 0 chr3 118434623 118434741 -41165042 + (GA)n Simple_repeat Simple_repeat 2 120 0 6 1488 2867 171 68 7 chr3 118435008 118435596 -41164187 - L1_Mur2 LINE L1 -237 5640 5017 6 1488 1017 129 23 82 chr3 118435599 118435819 -41163964 + L1_Mus1 LINE L1 5670 5876 -691 6 1488 2435 248 106 24 chr3 118435759 118436506 -41163277 - Lx9 LINE L1 -744 6900 6093 6 1488 225 0 0 0 chr3 118436514 118436539 -41163244 + (T)n Simple_repeat Simple_repeat 1 25 0 6 1488 332 205 26 0 chr3 118436576 118436654 -41163129 - Lx5 LINE L1 -981 6069 5990 6 1488 4808 183 66 5 chr3 118436651 118437519 -41162264 + Lx5 LINE L1 6117 7037 -13 6 1488 240 35 0 0 chr3 118437520 118437549 -41162234 + (TAAA)n Simple_repeat Simple_repeat 1 29 0 6 1488 6150 123 27 4 chr3 118437559 118438552 -41161231 + Lx2 LINE L1 5981 6996 -1 6 1488 4244 74 0 2 chr3 118438874 118439430 -41160353 - L1Md_F2 LINE L1 -6 6576 6022 6 1488 729 146 73 0 chr3 118440368 118440505 -41159278 + URR1A DNA MER1_type 79 225 -1 6 1488 617 237 76 0 chr3 118440833 118440964 -41158819 - RSINE1 SINE B4 -22 143 3 6 1488 4960 201 104 13 chr3 118441020 118441565 -41158218 - Lx5 LINE L1 -155 6895 6320 6 1488 531 0 0 0 chr3 118441565 118441624 -41158159 + (TG)n Simple_repeat Simple_repeat 2 60 0 6 1488 4960 201 104 13 chr3 118441624 118442204 -41157579 - Lx5 LINE L1 -731 6319 5669 6 1488 11318 96 31 19 chr3 118442199 118444007 -41155776 + L1_Mur1 LINE L1 2425 4254 -1632 6 1488 366 61 0 0 chr3 118444196 118444245 -41155538 + (CA)n Simple_repeat Simple_repeat 2 50 0 6 1488 3105 70 8 80 chr3 118444999 118445477 -41154306 - L1_Mus2 LINE L1 0 6566 6123 6 1488 4907 137 5 7 chr3 118445707 118446477 -41153306 + Lx2A1 LINE L1 6229 6997 -11 6 1488 2755 187 51 13 chr3 118447946 118448493 -41151290 - Lx LINE L1 0 6654 6087 6 1488 4904 184 23 72 chr3 118448492 118448577 -41151206 - L1VL4 LINE L1 -2393 3484 3412 6 1488 273 57 0 0 chr3 118448577 118448612 -41151171 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 6 1488 471 65 0 0 chr3 118448612 118448674 -41151109 - B1_Mm SINE Alu -9 138 77 6 1488 9116 179 20 88 chr3 118448674 118449772 -41150011 - L1VL4 LINE L1 -2469 3414 2342 6 1488 1512 35 0 29 chr3 118449772 118449978 -41149805 - L1Md_F3 LINE L1 -16 6568 6369 6 1488 9116 161 12 49 chr3 118449978 118452056 -41147727 - L1VL4 LINE L1 -3535 2348 405 6 1488 23 0 0 0 chr3 118452497 118452520 -41147263 + AT_rich Low_complexity Low_complexity 1 23 0 6 1488 513 0 0 0 chr3 118452541 118452598 -41147185 + (TA)n Simple_repeat Simple_repeat 1 57 0 6 1488 560 358 124 22 chr3 118454196 118454470 -41145313 - MER70A LTR ERVL -4 468 167 6 1488 2035 172 114 1 chr3 118454952 118455383 -41144400 - Lx5 LINE L1 -1012 6038 5557 6 1488 1615 215 85 45 chr3 118455372 118455819 -41143964 + Lx4B LINE L1 6585 7049 -9 6 1488 637 380 32 24 chr3 118455862 118456115 -41143668 - B4 SINE B4 -36 256 2 6 1488 462 346 139 31 chr3 118456382 118456957 -41142826 - Lx8 LINE L1 -6 7467 6831 6 1488 267 103 0 0 chr3 118457025 118457064 -41142719 + (TTA)n Simple_repeat Simple_repeat 1 39 0 6 1488 965 120 51 25 chr3 118457066 118457262 -41142521 - Lx3B LINE L1 -1 6972 6772 6 1488 288 0 0 0 chr3 118457442 118457474 -41142309 + (TG)n Simple_repeat Simple_repeat 1 32 0 6 1488 323 290 98 15 chr3 118457475 118457608 -41142175 - Lx7 LINE L1 -513 7183 7040 6 1488 302 164 0 27 chr3 118457614 118457689 -41142094 + Lx6 LINE L1 7384 7456 -4 6 1488 224 157 0 38 chr3 118459726 118459779 -41140004 + CT-rich Low_complexity Low_complexity 2 52 0 6 1488 211 54 54 0 chr3 118459825 118459862 -41139921 + (TG)n Simple_repeat Simple_repeat 2 40 0 6 1488 306 73 0 0 chr3 118461534 118461575 -41138208 + (CA)n Simple_repeat Simple_repeat 2 42 0 6 1488 1211 263 76 18 chr3 118462675 118463058 -41136725 + Lx8 LINE L1 7058 7462 -11 6 1488 202 136 44 22 chr3 118463340 118463385 -41136398 + (TTAA)n Simple_repeat Simple_repeat 4 49 0 6 1488 513 313 9 23 chr3 118464230 118464446 -41135337 + B3 SINE B2 3 215 -1 6 1488 301 291 44 26 chr3 118464687 118464800 -41134983 - LFSINE_Vert SINE SINE -101 358 244 6 1488 484 338 57 81 chr3 118465316 118465612 -41134171 + B4 SINE B4 3 291 -1 6 1488 513 44 0 0 chr3 118465641 118465709 -41134074 + (CA)n Simple_repeat Simple_repeat 1 68 0 6 1488 387 0 0 0 chr3 118465709 118465751 -41134032 + (GA)n Simple_repeat Simple_repeat 2 44 0 6 1488 29 0 0 0 chr3 118466223 118466252 -41133531 + AT_rich Low_complexity Low_complexity 1 29 0 6 1488 285 259 25 41 chr3 118466310 118466431 -41133352 + (CATATA)n Simple_repeat Simple_repeat 2 120 0 6 1488 24 53 0 0 chr3 118467231 118467269 -41132514 + AT_rich Low_complexity Low_complexity 1 38 0 6 1488 387 73 0 0 chr3 118467811 118467866 -41131917 + (TA)n Simple_repeat Simple_repeat 2 56 0 6 1488 8327 152 33 12 chr3 118467969 118470119 -41129664 - Lx2B LINE L1 0 7000 4807 6 1488 450 0 0 0 chr3 118470119 118470169 -41129614 + (TG)n Simple_repeat Simple_repeat 2 51 0 6 1488 6453 176 36 13 chr3 118470169 118470421 -41129362 - Lx2B LINE L1 -1071 4806 4550 6 1488 2655 35 0 0 chr3 118470634 118470952 -41128831 - L1Md_F2 LINE L1 -2 6580 6263 6 1488 219 250 0 0 chr3 118471073 118471125 -41128658 + (TCTA)n Simple_repeat Simple_repeat 3 54 0 6 1488 24 53 0 0 chr3 118471292 118471330 -41128453 + AT_rich Low_complexity Low_complexity 1 38 0 6 1488 549 333 62 46 chr3 118471782 118471977 -41127806 - B3A SINE B2 0 198 1 6 1488 263 28 28 0 chr3 118472017 118472053 -41127730 + (CAA)n Simple_repeat Simple_repeat 2 38 0 6 1488 3807 56 2 0 chr3 118472198 118472777 -41127006 - L1Md_F2 LINE L1 -521 6061 5482 6 1488 3849 57 0 10 chr3 118472777 118473274 -41126509 + L1Md_F2 LINE L1 6079 6570 -12 6 1488 23 33 0 0 chr3 118473328 118473358 -41126425 + AT_rich Low_complexity Low_complexity 1 30 0 6 1488 25 75 0 0 chr3 118473724 118473777 -41126006 + AT_rich Low_complexity Low_complexity 1 53 0 6 1488 351 255 69 30 chr3 118474687 118474788 -41124995 + PB1D10 SINE Alu 7 111 -6 6 1488 218 298 35 23 chr3 118474852 118474938 -41124845 + B3 SINE B2 97 183 -33 6 1488 1989 219 12 7 chr3 118474943 118475352 -41124431 - MTC LTR MaLR -8 413 3 6 1488 4225 148 28 6 chr3 118475967 118476689 -41123094 - Lx2B LINE L1 -1 6999 6262 6 1488 397 370 0 0 chr3 118476794 118476967 -41122816 + (TG)n Simple_repeat Simple_repeat 2 174 0 6 1488 24 0 0 0 chr3 118477180 118477204 -41122579 + AT_rich Low_complexity Low_complexity 1 24 0 6 1488 211 378 14 0 chr3 118477236 118477310 -41122473 - ID_B1 SINE B4 -83 141 67 6 1488 247 170 0 36 chr3 118478136 118478191 -41121592 + A-rich Low_complexity Low_complexity 3 55 0 6 1488 1151 77 0 6 chr3 118478224 118478393 -41121390 + (GA)n Simple_repeat Simple_repeat 2 169 0 6 1488 329 173 37 0 chr3 118478397 118478478 -41121305 + G-rich Low_complexity Low_complexity 3 86 0 6 1488 538 79 22 0 chr3 118478624 118478713 -41121070 + (TA)n Simple_repeat Simple_repeat 2 92 0 6 1488 3552 82 2 18 chr3 118478719 118479218 -41120565 - L1_Mus2 LINE L1 0 6566 6076 6 1488 4020 171 11 17 chr3 118479682 118480400 -41119383 - Lx2B LINE L1 -4 6996 6283 6 1488 3003 220 61 12 chr3 118480466 118481156 -41118627 - Lx5 LINE L1 -4 7046 6323 6 1488 2229 150 39 7 chr3 118481161 118481570 -41118213 - L1_Mur2 LINE L1 -961 4916 4495 6 1488 1384 165 4 4 chr3 118481566 118481809 -41117974 + L1_Mur2 LINE L1 4225 4467 -1410 6 1488 472 346 0 0 chr3 118481809 118481930 -41117853 + B1_Mur3 SINE Alu 19 139 -10 6 1488 288 70 0 0 chr3 118481930 118481973 -41117810 + (CAAAC)n Simple_repeat Simple_repeat 2 44 0 6 1488 319 215 155 50 chr3 118482234 118482415 -41117368 - L1M4 LINE L1 -875 5271 5072 6 1488 2680 143 14 0 chr3 118483008 118483426 -41116357 - Lx3B LINE L1 -58 6915 6492 6 1488 296 24 0 0 chr3 118483584 118483625 -41116158 + L1_Mus4 LINE L1 6581 6621 -15 6 1488 340 281 16 8 chr3 118483915 118484037 -41115746 - L1MC3 LINE L1 -176 7609 7487 6 1488 23 33 0 0 chr3 118484052 118484082 -41115701 + AT_rich Low_complexity Low_complexity 1 30 0 6 1488 301 316 17 9 chr3 118486266 118486381 -41113402 + GA-rich Low_complexity Low_complexity 2 117 0 6 1488 1035 66 0 0 chr3 118486411 118486547 -41113236 + (TA)n Simple_repeat Simple_repeat 1 136 0 6 1488 21 36 0 0 chr3 118487225 118487253 -41112530 + AT_rich Low_complexity Low_complexity 1 28 0 6 23 1952 153 38 3 chr3 118488837 118489204 -41110579 - MusHAL1 LINE L1 -860 1852 1473 6 1489 11562 124 17 16 chr3 118489198 118491184 -41108599 + L1_Mur1 LINE L1 3091 5077 -809 7 1489 21 0 0 0 chr3 118491286 118491307 -41108476 + AT_rich Low_complexity Low_complexity 1 21 0 7 1489 1888 123 41 6 chr3 118491652 118491970 -41107813 - Lx2 LINE L1 -1 6996 6668 7 1489 522 160 0 69 chr3 118491971 118492072 -41107711 + L1_Mur1 LINE L1 5536 5629 -248 7 1489 820 200 52 21 chr3 118492147 118492341 -41107442 + Lx4B LINE L1 6856 7055 -3 7 1489 730 317 110 39 chr3 118492385 118493251 -41106532 + L1MC LINE L1 4256 5182 -964 7 1489 224 59 0 29 chr3 118493496 118493531 -41106252 + (TTAG)n Simple_repeat Simple_repeat 1 34 0 7 1489 386 328 106 113 chr3 118493540 118493621 -41106162 - MLT1A0 LTR MaLR -64 301 224 7 1489 824 41 0 16 chr3 118493621 118493744 -41106039 - L1Md_F2 LINE L1 -2 6580 6460 7 1489 386 328 106 113 chr3 118493744 118493810 -41105973 - MLT1A0 LTR MaLR -142 223 153 7 1489 695 83 0 9 chr3 118493810 118493919 -41105864 + (TTTA)n Simple_repeat Simple_repeat 1 108 0 7 1489 386 328 106 113 chr3 118493919 118494035 -41105748 - MLT1A0 LTR MaLR -213 152 39 7 1489 210 319 50 33 chr3 118494333 118494453 -41105330 - MIR SINE MIR -100 162 41 7 1489 26 0 0 0 chr3 118495087 118495113 -41104670 + AT_rich Low_complexity Low_complexity 1 26 0 7 1489 30 27 0 0 chr3 118495266 118495303 -41104480 + AT_rich Low_complexity Low_complexity 1 37 0 7 1489 21 57 0 0 chr3 118495401 118495436 -41104347 + AT_rich Low_complexity Low_complexity 1 35 0 7 1489 661 280 16 32 chr3 118495448 118495636 -41104147 + B3 SINE B2 8 192 -24 7 1489 192 77 0 0 chr3 118496400 118496426 -41103357 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 7 1489 225 151 0 0 chr3 118496514 118496567 -41103216 + T-rich Low_complexity Low_complexity 1 53 0 7 1489 1121 81 0 0 chr3 118496567 118496715 -41103068 - B1_Mus1 SINE Alu 0 148 1 7 1489 612 40 0 0 chr3 118496790 118496865 -41102918 + (TC)n Simple_repeat Simple_repeat 1 75 0 7 1489 249 128 0 0 chr3 118496865 118496911 -41102872 + (CA)n Simple_repeat Simple_repeat 1 47 0 7 1489 222 136 0 0 chr3 118497983 118498027 -41101756 + (GA)n Simple_repeat Simple_repeat 1 44 0 7 1489 601 127 9 18 chr3 118498148 118498200 -41101583 + polypyrimidine Low_complexity Low_complexity 61 112 0 7 1489 1187 100 0 11 chr3 118498200 118498382 -41101401 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 7 1489 601 127 9 18 chr3 118498382 118498441 -41101342 + polypyrimidine Low_complexity Low_complexity 2 60 0 7 1489 803 81 15 61 chr3 118498452 118498583 -41101200 - B1_Mm SINE Alu -2 145 21 7 1489 236 226 0 16 chr3 118498908 118499000 -41100783 + (TTAA)n Simple_repeat Simple_repeat 1 90 0 7 1489 24 0 0 0 chr3 118500218 118500242 -41099541 + AT_rich Low_complexity Low_complexity 1 24 0 1 1489 2152 129 86 0 chr3 118501522 118501895 -41097888 - Lx2A1 LINE L1 0 7008 6604 2 1489 520 322 25 43 chr3 118502690 118502852 -41096931 + ID_B1 SINE B4 63 221 -3 3 1489 22 0 0 0 chr3 118502900 118502922 -41096861 + AT_rich Low_complexity Low_complexity 1 22 0 4 1489 7248 82 8 6 chr3 118503184 118504315 -41095468 + L1_Mus2 LINE L1 5432 6565 -1 5 1489 3348 174 11 6 chr3 118504322 118504952 -41094831 + L1_Mm LINE L1 4571 5203 -680 6 1489 276 171 71 0 chr3 118505055 118505125 -41094658 - L1_Mur2 LINE L1 -1669 4208 4134 7 1489 829 312 115 35 chr3 118505171 118506093 -41093690 + L1M2 LINE L1 4258 5253 -890 8 1489 1112 165 69 27 chr3 118506115 118506376 -41093407 - Lx3C LINE L1 -2 6974 6703 9 1489 343 16 45 30 chr3 118508065 118508131 -41091652 + (TTTG)n Simple_repeat Simple_repeat 2 68 0 1 1489 1039 101 0 0 chr3 118508131 118508269 -41091514 - B1_Mus1 SINE Alu -10 138 1 1 1489 711 225 21 31 chr3 118508784 118508977 -41090806 - Lx6 LINE L1 -20 7440 7250 1 1489 711 251 144 13 chr3 118508983 118509321 -41090462 - Lx6 LINE L1 -715 6335 5933 1 1489 6387 150 17 12 chr3 118509314 118511115 -41088668 - L1VL4 LINE L1 -1671 1888 128 1 1489 304 346 37 55 chr3 118511909 118512181 -41087602 - HERV16-int LTR ERVL -2404 2592 2326 1 1489 310 318 53 53 chr3 118512236 118512442 -41087341 - HERV16-int LTR ERVL -3441 2320 2115 1 1489 647 329 30 17 chr3 118512437 118512672 -41087111 - HERV16-int LTR ERVL -3011 1985 1748 1 1489 537 252 9 0 chr3 118512673 118512788 -41086995 + RSINE1 SINE B4 3 118 -47 1 1489 531 0 0 0 chr3 118513372 118513431 -41086352 + (GAAA)n Simple_repeat Simple_repeat 4 62 0 1 1489 450 0 0 0 chr3 118513519 118513569 -41086214 + (TA)n Simple_repeat Simple_repeat 2 51 0 1 1489 653 289 49 28 chr3 118513596 118513881 -41085902 - Lx7 LINE L1 -1817 5879 5589 1 1489 1698 232 92 47 chr3 118515558 118515655 -41084128 - RLTR20C LTR ERVK 0 534 436 1 1489 237 83 0 0 chr3 118515655 118515691 -41084092 + (CA)n Simple_repeat Simple_repeat 1 36 0 2 1489 1698 232 92 47 chr3 118515691 118516104 -41083679 - RLTR20C LTR ERVK -99 435 1 1 1489 180 0 0 0 chr3 118516991 118517011 -41082772 + (CA)n Simple_repeat Simple_repeat 1 20 0 2 1489 189 219 0 0 chr3 118517011 118517041 -41082742 + L2c LINE L2 3336 3365 -22 2 1489 357 303 137 63 chr3 118518128 118518399 -41081384 + MamRep605 Unknown Unknown 19 309 -567 2 1489 211 280 0 0 chr3 118519405 118519455 -41080328 + CT-rich Low_complexity Low_complexity 1 50 0 2 1489 324 158 0 0 chr3 118520532 118520589 -41079194 + CT-rich Low_complexity Low_complexity 1 57 0 2 1489 369 62 0 0 chr3 118520589 118520637 -41079146 + (TG)n Simple_repeat Simple_repeat 1 48 0 2 1489 586 293 13 0 chr3 118521043 118521193 -41078590 + Lx8 LINE L1 7118 7269 -204 2 1489 21 0 0 0 chr3 118521222 118521243 -41078540 + AT_rich Low_complexity Low_complexity 1 21 0 2 1489 29846 94 17 32 chr3 118521248 118522964 -41076819 + Lx3_Mus LINE L1 1290 2990 -2896 2 1489 1461 66 0 15 chr3 118522964 118523163 -41076620 + L1_Mus1 LINE L1 6371 6566 -1 3 1489 29846 94 17 32 chr3 118523163 118523453 -41076330 + Lx3_Mus LINE L1 2991 3249 -2637 2 1489 5030 43 2 14 chr3 118523453 118524082 -41075701 + L1Md_F2 LINE L1 5948 6568 -14 3 1489 29846 94 17 32 chr3 118524082 118526012 -41073771 + Lx3_Mus LINE L1 3250 5197 -689 2 1489 1810 121 10 26 chr3 118526012 118526317 -41073466 - L1_Mus3 LINE L1 -4 6634 6335 3 1489 29846 104 20 43 chr3 118526317 118527428 -41072355 + Lx3_Mus LINE L1 5198 6239 -770 2 1489 23 78 0 0 chr3 118527643 118527694 -41072089 + AT_rich Low_complexity Low_complexity 1 51 0 3 1489 322 160 75 9 chr3 118527794 118527901 -41071882 + (TA)n Simple_repeat Simple_repeat 1 114 0 3 1489 656 248 125 22 chr3 118529836 118530108 -41069675 - Lx9 LINE L1 -2 7642 7343 3 1489 617 271 8 0 chr3 118530240 118530373 -41069410 - B1F1 SINE Alu -7 142 9 3 1489 266 198 0 19 chr3 118531300 118531408 -41068375 + (CAGA)n Simple_repeat Simple_repeat 2 107 0 3 1489 185 119 0 23 chr3 118531723 118531766 -41068017 + (CAAA)n Simple_repeat Simple_repeat 1 42 0 3 1489 689 304 96 11 chr3 118532342 118532602 -41067181 + B4 SINE B4 9 290 -2 3 1489 231 152 0 0 chr3 118532653 118532699 -41067084 + (CA)n Simple_repeat Simple_repeat 2 47 0 4 1489 1153 207 18 0 chr3 118533036 118533258 -41066525 + URR1A DNA MER1_type 1 226 0 4 1489 1074 94 40 28 chr3 118533324 118533500 -41066283 + Lx2 LINE L1 6820 6997 0 4 1489 690 24 0 0 chr3 118534970 118535054 -41064729 + (CA)n Simple_repeat Simple_repeat 1 84 0 4 1489 363 269 70 21 chr3 118535207 118535393 -41064390 + L1MA4A LINE L1 5724 5918 -385 4 1489 213 68 44 22 chr3 118535409 118535454 -41064329 + (TATATG)n Simple_repeat Simple_repeat 2 47 0 4 1489 414 0 0 0 chr3 118535707 118535753 -41064030 + (TC)n Simple_repeat Simple_repeat 1 46 0 4 1489 393 127 0 0 chr3 118535759 118535838 -41063945 + (TCTA)n Simple_repeat Simple_repeat 4 82 0 4 1489 1096 81 0 0 chr3 118536028 118536176 -41063607 - B1_Mus1 SINE Alu 0 148 1 4 1489 477 0 0 0 chr3 118538530 118538583 -41061200 + (TG)n Simple_repeat Simple_repeat 1 53 0 4 1489 247 337 104 19 chr3 118538590 118538696 -41061087 - RSINE1 SINE B4 -29 136 22 5 1489 308 252 235 37 chr3 118540078 118540198 -41059585 + HAL1-3A_ME LINE L1 2292 2438 -420 5 1489 243 88 0 0 chr3 118540198 118540232 -41059551 + (CAGA)n Simple_repeat Simple_repeat 2 35 0 5 1489 308 252 235 37 chr3 118540232 118540247 -41059536 + HAL1-3A_ME LINE L1 2439 2454 -404 5 1489 424 306 89 58 chr3 118540583 118540774 -41059009 - MLT1H LTR MaLR -253 296 100 5 1489 380 307 86 13 chr3 118541077 118541229 -41058554 + MIR SINE MIR 92 254 -8 5 1489 243 146 0 0 chr3 118541385 118541426 -41058357 + (TG)n Simple_repeat Simple_repeat 2 42 0 5 1489 953 327 44 4 chr3 118541433 118541703 -41058080 - B4 SINE B4 0 292 12 5 1489 4177 110 42 53 chr3 118542866 118543625 -41056158 - RMER17A LTR ERVK 0 751 1 5 1489 225 188 20 20 chr3 118544043 118544092 -41055691 + (TGG)n Simple_repeat Simple_repeat 2 50 0 5 1489 360 0 0 0 chr3 118544092 118544132 -41055651 + (TG)n Simple_repeat Simple_repeat 2 41 0 5 1489 227 356 20 0 chr3 118544139 118544240 -41055543 + L1M7 LINE L1 359 461 -5757 6 1489 522 0 0 0 chr3 118544376 118544434 -41055349 + (TC)n Simple_repeat Simple_repeat 1 58 0 6 1489 426 39 0 0 chr3 118544434 118544486 -41055297 + (CA)n Simple_repeat Simple_repeat 1 52 0 6 1489 262 361 82 0 chr3 118544609 118544706 -41055077 + PB1D7 SINE Alu 16 120 0 6 1489 22 56 0 0 chr3 118544994 118545030 -41054753 + AT_rich Low_complexity Low_complexity 1 36 0 6 1489 959 177 11 6 chr3 118545057 118545233 -41054550 - B2_Mm2 SINE B2 -3 192 16 6 1489 2318 139 13 13 chr3 118545233 118545627 -41054156 + Lx3B LINE L1 6576 6969 -4 6 1489 195 100 0 0 chr3 118545922 118545952 -41053831 + (TTTTA)n Simple_repeat Simple_repeat 2 31 0 6 1489 475 247 80 17 chr3 118547467 118547637 -41052146 + L1MC LINE L1 5338 5529 -2353 6 1489 592 260 7 14 chr3 118547772 118547920 -41051863 - RSINE1 SINE B4 -15 150 4 6 1489 322 375 77 77 chr3 118548275 118548509 -41051274 + B4 SINE B4 37 270 -22 7 1489 437 0 19 0 chr3 118548601 118548654 -41051129 + (GA)n Simple_repeat Simple_repeat 2 55 0 7 1489 305 258 20 30 chr3 118548654 118548754 -41051029 + L1M2 LINE L1 5399 5497 -803 7 1489 782 38 9 0 chr3 118549202 118549308 -41050475 + (TTTTG)n Simple_repeat Simple_repeat 2 108 0 7 1489 616 269 28 21 chr3 118550675 118550819 -41048964 + ID_B1 SINE B4 4 148 -76 7 1489 228 380 24 102 chr3 118550819 118550842 -41048941 + ZP3AR Satellite Satellite 46 199 -13 7 1489 1014 291 60 61 chr3 118550854 118551476 -41048307 - L1MA6 LINE L1 -191 6109 5489 7 1489 396 223 82 30 chr3 118551666 118551800 -41047983 - L1MA6 LINE L1 -824 5476 5336 7 1489 753 41 0 0 chr3 118554949 118555046 -41044737 + (TG)n Simple_repeat Simple_repeat 1 97 0 7 1489 513 0 0 0 chr3 118555046 118555102 -41044681 + (GA)n Simple_repeat Simple_repeat 1 57 0 7 1489 2554 289 74 34 chr3 118555109 118556122 -41043661 - Lx9 LINE L1 -172 7472 6419 7 1489 810 0 0 0 chr3 118556160 118556260 -41043523 - L1Md_A LINE L1 -1 6581 6482 8 1489 2668 189 13 46 chr3 118556534 118557077 -41042706 - RLTR11A LTR ERVK -3 525 1 8 1489 21 0 0 0 chr3 118557259 118557280 -41042503 + AT_rich Low_complexity Low_complexity 1 21 0 8 1489 387 0 0 0 chr3 118557610 118557653 -41042130 + (CA)n Simple_repeat Simple_repeat 2 44 0 8 1489 24 0 0 0 chr3 118560682 118560706 -41039077 + AT_rich Low_complexity Low_complexity 1 24 0 8 1489 1118 76 14 0 chr3 118562472 118562616 -41037167 + B1_Mus2 SINE Alu 2 147 0 8 1489 293 375 41 70 chr3 118562720 118563035 -41036748 + MLT1A0 LTR MaLR 58 363 -2 8 1489 329 138 0 12 chr3 118563059 118563140 -41036643 + L1_Mus3 LINE L1 6559 6638 0 8 1489 344 253 32 0 chr3 118563153 118563248 -41036535 - Lx6 LINE L1 -32 7428 7331 8 1489 293 222 73 100 chr3 118564057 118564167 -41035616 - MLT1B LTR MaLR -4 463 357 8 1489 427 296 0 9 chr3 118564170 118564494 -41035289 + (TG)n Simple_repeat Simple_repeat 1 320 0 9 1489 474 287 75 44 chr3 118564504 118564730 -41035053 - MLT1B LTR MaLR -129 261 29 8 1489 23 68 0 0 chr3 118564842 118564886 -41034897 + AT_rich Low_complexity Low_complexity 1 44 0 9 1489 7664 100 14 6 chr3 118564984 118566472 -41033311 - L1_Mus3 LINE L1 -6 6632 5131 9 1489 308 336 15 39 chr3 118566539 118566669 -41033114 - B3A SINE B2 -66 132 6 9 1489 268 264 102 84 chr3 118567807 118568130 -41031653 - L1MC3 LINE L1 -9 7776 7448 9 1489 501 302 49 60 chr3 118568918 118569101 -41030682 + B4A SINE B4 107 287 -5 9 1489 570 29 0 0 chr3 118569133 118569201 -41030582 + (CA)n Simple_repeat Simple_repeat 1 68 0 9 1489 216 158 0 0 chr3 118569209 118569247 -41030536 + GA-rich Low_complexity Low_complexity 3 40 0 9 1489 303 289 48 0 chr3 118570923 118571088 -41028695 + Lx8 LINE L1 5769 5906 -394 9 1489 23 0 0 0 chr3 118571291 118571314 -41028469 + AT_rich Low_complexity Low_complexity 1 23 0 9 1489 296 255 9 36 chr3 118571383 118571493 -41028290 + MER5C DNA MER1_type 129 235 -78 1 1489 328 318 50 50 chr3 118572186 118572345 -41027438 + B3A SINE B2 1 159 -39 1 1489 320 363 21 63 chr3 118572459 118572650 -41027133 + B3A SINE B2 2 184 -14 1 1489 253 229 22 17 chr3 118573501 118573684 -41026099 + (TG)n Simple_repeat Simple_repeat 1 184 0 1 1489 201 238 56 19 chr3 118573606 118573713 -41026070 + (TATG)n Simple_repeat Simple_repeat 2 112 0 1 1489 417 39 0 0 chr3 118573722 118573773 -41026010 + (TA)n Simple_repeat Simple_repeat 1 51 0 1 1489 307 340 10 0 chr3 118574328 118574431 -41025352 + RSINE1 SINE B4 3 106 -59 1 1489 267 31 0 0 chr3 118574472 118574504 -41025279 + (CA)n Simple_repeat Simple_repeat 1 32 0 1 1489 500 56 0 14 chr3 118574504 118574577 -41025206 + (GA)n Simple_repeat Simple_repeat 1 72 0 1 1489 400 130 22 0 chr3 118574578 118574670 -41025113 + (CA)n Simple_repeat Simple_repeat 2 95 0 1 1489 223 396 93 9 chr3 118574943 118575050 -41024733 - B3 SINE B2 -89 127 12 1 1489 444 293 64 39 chr3 118575950 118576106 -41023677 + MLT1A0 LTR MaLR 34 193 -172 1 1489 222 171 0 0 chr3 118576775 118576816 -41022967 + (CTG)n Simple_repeat Simple_repeat 1 41 0 1 1489 594 329 14 0 chr3 118576816 118577026 -41022757 - ID_B1 SINE B4 -8 216 4 1 1489 302 159 0 99 chr3 118578014 118578105 -41021678 + Lx6 LINE L1 7314 7395 -65 1 1489 1108 311 46 34 chr3 118579332 118579912 -41019871 - RMER15 LTR ERVL 0 575 75 1 1489 183 42 0 0 chr3 118580049 118580073 -41019710 + (CAAAC)n Simple_repeat Simple_repeat 4 27 0 1 1489 303 93 0 0 chr3 118580074 118580117 -41019666 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 1 1489 314 324 107 9 chr3 118580150 118580262 -41019521 - RSINE1 SINE B4 -40 125 3 1 1489 189 391 23 23 chr3 118580818 118580949 -41018834 - MIR3 SINE MIR -64 144 14 1 1489 372 22 0 0 chr3 118582461 118582506 -41017277 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 1489 305 198 229 0 chr3 118582539 118582635 -41017148 - B3A SINE B2 -80 118 1 1 1489 191 282 38 13 chr3 118582687 118582766 -41017017 + MIRm SINE MIR 79 159 -117 1 1489 1296 202 86 16 chr3 118583661 118583775 -41016008 + ORR1C2 LTR MaLR 1 166 -218 1 1489 618 14 0 0 chr3 118583775 118583846 -41015937 + (TC)n Simple_repeat Simple_repeat 1 71 0 1 1489 1296 190 37 15 chr3 118583846 118584056 -41015727 + ORR1C2 LTR MaLR 167 383 -1 1 1489 21 89 0 0 chr3 118584389 118584445 -41015338 + AT_rich Low_complexity Low_complexity 1 56 0 1 1489 572 0 15 0 chr3 118584679 118584747 -41015036 + (TAGA)n Simple_repeat Simple_repeat 4 72 0 1 1489 222 250 0 167 chr3 118586089 118586161 -41013622 + L2c LINE L2 3323 3382 -5 1 1489 13090 91 11 29 chr3 118586291 118588331 -41011452 - L1VL4 LINE L1 -57 3502 1501 1 1489 4898 121 24 4 chr3 118588326 118589172 -41010611 - L1VL4 LINE L1 -2513 1046 181 1 1489 255 312 153 47 chr3 118589545 118589760 -41010023 - MIRb SINE MIR -8 260 23 1 1489 795 94 0 0 chr3 118590007 118590134 -41009649 + (TC)n Simple_repeat Simple_repeat 1 127 0 1 1489 387 0 0 0 chr3 118590134 118590176 -41009607 + (CA)n Simple_repeat Simple_repeat 1 43 0 1 1489 29 0 0 0 chr3 118591531 118591560 -41008223 + AT_rich Low_complexity Low_complexity 1 29 0 1 1489 21 82 0 0 chr3 118591725 118591774 -41008009 + AT_rich Low_complexity Low_complexity 1 49 0 1 1489 637 308 5 14 chr3 118592922 118593133 -41006650 + B3 SINE B2 4 212 -4 1 1489 1612 170 99 34 chr3 118593283 118593666 -41006117 - RMER17C LTR ERVK -2 408 1 1 1489 459 170 0 0 chr3 118594303 118594403 -41005380 + (CA)n Simple_repeat Simple_repeat 2 101 0 1 1489 180 0 0 0 chr3 118594496 118594516 -41005267 + (A)n Simple_repeat Simple_repeat 1 20 0 1 1489 351 0 0 0 chr3 118594695 118594734 -41005049 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 1489 408 264 9 28 chr3 118594754 118594863 -41004920 + B3 SINE B2 2 108 -108 1 1489 587 301 27 47 chr3 118595817 118596113 -41003670 + B4A SINE B4 3 292 0 1 1489 275 80 40 0 chr3 118596145 118596195 -41003588 + (CAGA)n Simple_repeat Simple_repeat 1 52 0 1 1489 276 292 77 82 chr3 118596196 118596379 -41003404 + MIR SINE MIR 72 253 -9 1 1489 327 25 0 0 chr3 118597101 118597141 -41002642 + (TG)n Simple_repeat Simple_repeat 2 41 0 1 1489 324 0 0 0 chr3 118597262 118597298 -41002485 + (CA)n Simple_repeat Simple_repeat 2 37 0 1 1489 256 262 40 171 chr3 118597358 118597510 -41002273 - B1F1 SINE Alu -12 137 6 1 1489 479 279 93 38 chr3 118597403 118597586 -41002197 - ID_B1 SINE B4 -24 200 8 1 1489 478 310 88 0 chr3 118597586 118597802 -41001981 - MLT2C1 LTR ERVL -149 248 14 1 1489 460 182 8 60 chr3 118598298 118598432 -41001351 + Lx9 LINE L1 7391 7517 -127 1 1489 2087 121 3 3 chr3 118598474 118598780 -41001003 - ORR1A2 LTR MaLR -20 307 2 1 1489 233 311 61 79 chr3 118598841 118599005 -41000778 - RSINE1 SINE B4 0 165 5 1 1489 210 91 0 0 chr3 118599156 118599189 -41000594 + (T)n Simple_repeat Simple_repeat 1 33 0 1 1489 231 167 0 0 chr3 118599339 118599381 -41000402 + (TATATG)n Simple_repeat Simple_repeat 3 44 0 1 1489 1816 236 17 12 chr3 118599448 118599859 -40999924 - MTC LTR MaLR -8 413 1 1 1489 21 0 0 0 chr3 118600166 118600187 -40999596 + AT_rich Low_complexity Low_complexity 1 21 0 1 1489 449 350 12 6 chr3 118601219 118601380 -40998403 + RSINE1 SINE B4 4 165 0 1 1489 23 38 0 54 chr3 118601388 118601444 -40998339 + AT_rich Low_complexity Low_complexity 1 53 0 1 1489 323 136 0 17 chr3 118601444 118601504 -40998279 + (TATG)n Simple_repeat Simple_repeat 2 60 0 1 1489 284 176 50 22 chr3 118602658 118602797 -40996986 + (TA)n Simple_repeat Simple_repeat 1 143 0 1 1489 477 0 0 0 chr3 118604052 118604105 -40995678 + (CAAAA)n Simple_repeat Simple_repeat 2 54 0 1 1489 534 16 0 0 chr3 118605341 118605404 -40994379 + (TG)n Simple_repeat Simple_repeat 1 63 0 1 1489 35 0 0 0 chr3 118606019 118606054 -40993729 + AT_rich Low_complexity Low_complexity 1 35 0 1 1489 1075 259 79 42 chr3 118606057 118606412 -40993371 - ORR1D2 LTR MaLR -2 368 1 1 1489 1125 96 0 0 chr3 118606496 118606642 -40993141 + B1_Mus1 SINE Alu 1 146 -2 1 1489 252 0 0 0 chr3 118606642 118606670 -40993113 + (TA)n Simple_repeat Simple_repeat 2 29 0 1 1489 550 218 88 7 chr3 118606706 118606854 -40992929 - MER5A DNA MER1_type -4 185 26 1 1489 3541 2 0 0 chr3 118607828 118608223 -40991560 - L1Md_A LINE L1 0 6582 6188 1 1489 225 0 0 0 chr3 118608325 118608350 -40991433 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 1 1489 363 305 66 44 chr3 118609010 118609147 -40990636 - ID_B1 SINE B4 0 224 85 1 1489 526 340 98 67 chr3 118609893 118610252 -40989531 + MTD LTR MaLR 6 375 -44 1 1489 461 320 75 20 chr3 118611040 118611241 -40988542 + Lx8 LINE L1 7137 7348 -125 1 1489 2031 164 63 0 chr3 118611238 118611605 -40988178 - Lx LINE L1 -306 5577 5188 1 1489 4793 84 20 9 chr3 118611605 118612269 -40987514 + Lx LINE L1 5587 6257 -397 1 1489 201 39 0 0 chr3 118612859 118612885 -40986898 + (TAG)n Simple_repeat Simple_repeat 1 26 0 1 1489 342 0 0 0 chr3 118612926 118612964 -40986819 + (CA)n Simple_repeat Simple_repeat 1 38 0 1 1489 459 0 0 0 chr3 118612964 118613014 -40986769 + (GA)n Simple_repeat Simple_repeat 2 52 0 1 1489 266 272 98 0 chr3 118613130 118613222 -40986561 + MER31A LTR ERV1 1 101 -384 1 1489 712 345 18 65 chr3 118613260 118613647 -40986136 - MER31A LTR ERV1 -116 369 1 1 1489 333 228 59 89 chr3 118614566 118614667 -40985116 + ORR1E LTR MaLR 9 106 -253 1 1489 438 316 38 13 chr3 118617261 118617418 -40982365 + RSINE1 SINE B4 4 164 -1 1 1489 265 325 0 0 chr3 118619656 118619736 -40980047 - ID4_ SINE ID 0 83 4 1 1490 320 0 25 0 chr3 118621589 118621629 -40978154 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 1490 323 256 36 107 chr3 118623392 118623532 -40976251 + MIRc SINE MIR 100 229 -39 1 1490 5711 110 24 2 chr3 118623638 118624479 -40975304 - Lx2A LINE L1 0 7008 6150 1 1490 860 313 53 7 chr3 118624526 118624941 -40974842 + L1M1 LINE L1 5336 5769 -531 1 1490 192 364 148 5 chr3 118625518 118625728 -40974055 + MIR SINE MIR 23 262 0 1 1490 9058 20 0 0 chr3 118627735 118628781 -40971002 - L1Md_T LINE L1 -176 5707 4662 1 1490 7389 36 0 2 chr3 118628781 118629722 -40970061 + L1Md_T LINE L1 5700 6582 0 1 1490 230 321 24 0 chr3 118629722 118629806 -40969977 - L2c LINE L2 -230 3157 3072 1 1490 1591 101 23 15 chr3 118630265 118630526 -40969257 - Lx3_Mus LINE L1 0 7009 6747 1 1490 21 0 0 0 chr3 118630945 118630966 -40968817 + AT_rich Low_complexity Low_complexity 1 21 0 1 1490 650 279 48 27 chr3 118631308 118631496 -40968287 - B4 SINE B4 -6 286 95 1 1490 217 226 0 0 chr3 118631507 118631560 -40968223 + T-rich Low_complexity Low_complexity 2 54 0 1 1490 214 87 0 42 chr3 118631659 118631707 -40968076 + (TTTTG)n Simple_repeat Simple_repeat 5 50 0 1 1490 312 406 34 5 chr3 118631715 118631923 -40967860 - Lx8 LINE L1 -157 7316 7103 1 1490 226 349 0 0 chr3 118631985 118632068 -40967715 - B4 SINE B4 -204 88 6 1 1490 1177 74 0 0 chr3 118633543 118633691 -40966092 + B1_Mus1 SINE Alu 1 148 0 1 1490 291 136 34 0 chr3 118633709 118633768 -40966015 + MER99 DNA hAT? 171 231 -600 1 1490 22 0 0 0 chr3 118633777 118633799 -40965984 + AT_rich Low_complexity Low_complexity 1 22 0 1 1490 1273 228 80 17 chr3 118634328 118634680 -40965103 - ORR1D1 LTR MaLR 0 374 1 1 1490 193 57 57 0 chr3 118636531 118636566 -40963217 + (TTG)n Simple_repeat Simple_repeat 3 39 0 1 1490 21 0 0 0 chr3 118639858 118639879 -40959904 + AT_rich Low_complexity Low_complexity 1 21 0 1 1490 2586 80 3 6 chr3 118639882 118640233 -40959550 - L1_Mus2 LINE L1 0 6566 6217 1 1490 4473 50 12 0 chr3 118640233 118640791 -40958992 + L1_Mus2 LINE L1 5652 6216 -350 1 1490 1477 198 32 37 chr3 118641212 118641538 -40958245 + ORR1D1 LTR MaLR 1 349 -35 2 1490 294 29 0 0 chr3 118641538 118641573 -40958210 + (TTG)n Simple_repeat Simple_repeat 3 37 0 2 1490 1207 221 106 36 chr3 118641573 118641603 -40958180 + ORR1D1 LTR MaLR 350 381 -3 2 1490 790 152 13 0 chr3 118642889 118643047 -40956736 + CT-rich Low_complexity Low_complexity 2 161 0 2 1490 621 365 9 5 chr3 118643921 118644144 -40955639 + B4A SINE B4 3 226 -66 2 1490 614 320 114 30 chr3 118645630 118645962 -40953821 - Lx9 LINE L1 -227 7417 7058 2 1490 657 38 0 0 chr3 118646137 118646217 -40953566 + (TC)n Simple_repeat Simple_repeat 1 80 0 2 1490 23 0 0 0 chr3 118646475 118646498 -40953285 + AT_rich Low_complexity Low_complexity 1 23 0 2 1490 223 341 34 34 chr3 118647507 118647595 -40952188 - RSINE1 SINE B4 -77 88 1 2 1490 344 202 119 0 chr3 118648241 118648350 -40951433 - Lx9 LINE L1 -1 7643 7522 2 1490 348 24 0 0 chr3 118648368 118648409 -40951374 + (CA)n Simple_repeat Simple_repeat 2 42 0 2 1490 341 157 0 0 chr3 118648442 118648512 -40951271 - Lx9 LINE L1 -130 7514 7445 2 1490 7158 39 1 4 chr3 118649750 118650896 -40948887 - L1Md_F3 LINE L1 -456 6128 4987 2 1490 3703 44 0 2 chr3 118650896 118651354 -40948429 + L1Md_F3 LINE L1 6127 6583 -1 2 1490 1152 68 0 0 chr3 118651364 118651510 -40948273 + B1_Mus2 SINE Alu 1 146 -1 2 1490 7709 119 62 16 chr3 118651643 118652660 -40947123 - Lx3A LINE L1 0 6981 5905 2 1490 1049 91 11 22 chr3 118652660 118652839 -40946944 + (TTTC)n Simple_repeat Simple_repeat 4 180 0 2 1490 7709 94 21 73 chr3 118652839 118653624 -40946159 - Lx3A LINE L1 -1077 5904 5164 2 1490 512 316 111 11 chr3 118653644 118653833 -40945950 - MTD LTR MaLR -14 405 198 2 1490 390 354 43 38 chr3 118654059 118654244 -40945539 - MTD LTR MaLR -216 203 18 2 1490 21 57 0 0 chr3 118654334 118654369 -40945414 + AT_rich Low_complexity Low_complexity 1 35 0 2 1490 558 255 95 8 chr3 118654404 118654643 -40945140 - MTD LTR MaLR -68 351 60 2 1490 312 258 158 9 chr3 118654812 118655027 -40944756 - L1MA5 LINE L1 -18 6282 6036 2 1490 32 26 0 0 chr3 118655130 118655169 -40944614 + AT_rich Low_complexity Low_complexity 1 39 0 2 1490 35491 71 5 6 chr3 118655222 118661487 -40938296 + L1Md_F2 LINE L1 286 6541 -41 2 1490 1500 17 6 0 chr3 118661487 118661668 -40938115 + MTA_Mm LTR MaLR 215 396 0 2 1490 2814 23 0 3 chr3 118661668 118662016 -40937767 + MTA_Mm-int LTR MaLR 1 335 -763 2 1490 23 33 0 0 chr3 118662023 118662053 -40937730 + AT_rich Low_complexity Low_complexity 1 30 0 2 1490 32 0 0 0 chr3 118662689 118662721 -40937062 + AT_rich Low_complexity Low_complexity 1 32 0 2 1490 2069 151 34 11 chr3 118662738 118663094 -40936689 - L1_Mus4 LINE L1 -9 6627 6264 2 1490 1540 74 5 0 chr3 118663094 118663296 -40936487 + L1_Mus4 LINE L1 6039 6241 -395 2 1490 622 266 1 63 chr3 118663471 118663690 -40936093 + B3A SINE B2 10 212 -4 2 1490 573 61 0 0 chr3 118663825 118663907 -40935876 + (TC)n Simple_repeat Simple_repeat 1 82 0 2 1490 216 0 0 0 chr3 118663907 118663930 -40935853 + (CA)n Simple_repeat Simple_repeat 1 24 0 2 1490 759 66 0 0 chr3 118664406 118664512 -40935271 + (TAGA)n Simple_repeat Simple_repeat 4 109 0 2 1490 972 96 0 7 chr3 118664958 118665094 -40934689 + B1_Mus2 SINE Alu 1 135 -12 2 1490 980 47 16 0 chr3 118665094 118665223 -40934560 + (GAAA)n Simple_repeat Simple_repeat 2 132 0 2 1490 583 229 8 0 chr3 118665232 118665354 -40934429 + B3A SINE B2 2 124 -74 2 1490 375 73 0 0 chr3 118665600 118665655 -40934128 + (CAGA)n Simple_repeat Simple_repeat 2 56 0 2 1490 15859 120 33 5 chr3 118665725 118669173 -40930610 + L1_Mus3 LINE L1 3096 6638 0 2 1490 1020 149 0 0 chr3 118669173 118669347 -40930436 + (GGA)n Simple_repeat Simple_repeat 2 175 0 2 1490 1368 67 0 0 chr3 118669347 118669527 -40930256 + (GAA)n Simple_repeat Simple_repeat 1 180 0 2 1490 207 398 32 0 chr3 118670785 118670908 -40928875 - MIRb SINE MIR -113 155 29 2 1490 754 115 50 14 chr3 118671263 118671404 -40928379 - Lx4A LINE L1 0 7058 6913 2 1490 816 268 0 41 chr3 118671468 118671686 -40928097 - B3 SINE B2 -6 210 2 2 1490 366 108 0 0 chr3 118671689 118671754 -40928029 + (TC)n Simple_repeat Simple_repeat 2 66 0 2 1490 282 286 41 99 chr3 118671964 118672135 -40927648 - Tigger13a DNA MER2_type -364 407 247 2 1490 33578 102 17 5 chr3 118672432 118678681 -40921102 - L1Md_F2 LINE L1 -12 6570 238 2 1490 644 162 0 0 chr3 118679506 118679605 -40920178 + Lx3C LINE L1 6615 6713 -263 2 1490 1256 93 14 28 chr3 118679605 118679971 -40919812 + (CATATA)n Simple_repeat Simple_repeat 1 360 0 2 1490 242 132 19 0 chr3 118680024 118680077 -40919706 + (TA)n Simple_repeat Simple_repeat 1 54 0 2 1490 653 292 0 0 chr3 118680805 118680959 -40918824 + LFSINE_Vert SINE SINE 1 154 -305 2 1490 342 0 0 0 chr3 118682718 118682756 -40917027 + (GA)n Simple_repeat Simple_repeat 1 38 0 2 1490 255 204 0 0 chr3 118682900 118682954 -40916829 + CT-rich Low_complexity Low_complexity 2 55 0 2 1490 764 214 6 0 chr3 118682969 118683147 -40916636 + CT-rich Low_complexity Low_complexity 2 180 0 2 1490 21 57 0 0 chr3 118683361 118683396 -40916387 + AT_rich Low_complexity Low_complexity 1 35 0 2 1490 3664 98 39 7 chr3 118684249 118684795 -40914988 - L1_Mus2 LINE L1 -1 6565 6003 2 1490 373 286 96 30 chr3 118685077 118685243 -40914540 + Lx8 LINE L1 7271 7447 -26 2 1490 323 218 322 7 chr3 118685325 118685441 -40914342 - Lx6 LINE L1 -175 7285 7130 2 1490 375 23 0 0 chr3 118685441 118685485 -40914298 + (TA)n Simple_repeat Simple_repeat 1 44 0 2 1490 323 218 322 7 chr3 118685485 118685511 -40914272 - Lx6 LINE L1 -331 7129 7098 2 1490 209 217 0 0 chr3 118685552 118685598 -40914185 + A-rich Low_complexity Low_complexity 1 46 0 2 1490 212 131 21 21 chr3 118685746 118685793 -40913990 + T-rich Low_complexity Low_complexity 5 51 0 2 1490 481 323 97 0 chr3 118687155 118687279 -40912504 + RSINE1 SINE B4 2 137 -28 2 1490 393 86 0 0 chr3 118687307 118687365 -40912418 + (CA)n Simple_repeat Simple_repeat 1 58 0 2 1490 24 0 0 0 chr3 118687365 118687389 -40912394 + AT_rich Low_complexity Low_complexity 1 24 0 2 1490 390 287 97 37 chr3 118687418 118687777 -40912006 + L1MB1 LINE L1 1422 1886 -4592 2 1490 229 245 10 39 chr3 118688017 118688119 -40911664 + A-rich Low_complexity Low_complexity 2 100 0 2 1490 234 0 0 0 chr3 118688181 118688207 -40911576 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 2 1490 1160 36 0 0 chr3 118688207 118688344 -40911439 - B1_Mus1 SINE Alu -10 138 2 2 1490 352 298 46 13 chr3 118688353 118688530 -40911253 + L1MB1 LINE L1 2325 2500 -3876 2 1490 292 273 186 16 chr3 118689059 118689135 -40910648 + L1MB1 LINE L1 2839 2924 -3455 2 1490 675 0 0 0 chr3 118689135 118689210 -40910573 + (TTTTG)n Simple_repeat Simple_repeat 2 76 0 2 1490 186 43 0 0 chr3 118689212 118689235 -40910548 + (TG)n Simple_repeat Simple_repeat 1 23 0 2 1490 292 273 186 16 chr3 118689235 118689397 -40910386 + L1MB1 LINE L1 2925 3117 -3262 2 1490 280 303 168 61 chr3 118689519 118690021 -40909762 + L1MB1 LINE L1 3319 3918 -2464 2 1490 465 19 0 0 chr3 118690021 118690075 -40909708 + (CA)n Simple_repeat Simple_repeat 1 54 0 2 1490 280 303 168 61 chr3 118690075 118690411 -40909372 + L1MB1 LINE L1 3913 4246 -2130 2 1490 256 231 13 136 chr3 118690527 118690682 -40909101 + L1MD LINE L1 5222 5357 -789 2 1490 25 0 0 0 chr3 118690717 118690742 -40909041 + AT_rich Low_complexity Low_complexity 1 25 0 2 1490 477 278 98 48 chr3 118690822 118691259 -40908524 + L1MB1 LINE L1 5759 6220 -328 2 1490 482 274 0 0 chr3 118691264 118691370 -40908413 + B1_Mur2 SINE Alu 33 138 -11 2 1490 260 53 0 26 chr3 118691370 118691409 -40908374 + (TAA)n Simple_repeat Simple_repeat 2 39 0 2 1490 1436 198 36 0 chr3 118691810 118692118 -40907665 - Lx5 LINE L1 0 7050 6732 2 1490 21 0 0 0 chr3 118692676 118692697 -40907086 + AT_rich Low_complexity Low_complexity 1 21 0 2 1490 458 345 14 0 chr3 118692966 118693108 -40906675 - ID_B1 SINE B4 -9 215 72 2 1490 317 291 139 0 chr3 118693841 118693920 -40905863 - RSINE1 SINE B4 -22 143 54 2 1490 657 255 41 10 chr3 118694309 118694503 -40905280 + B3 SINE B2 1 200 -16 2 1490 605 189 24 0 chr3 118694535 118694699 -40905084 + (TA)n Simple_repeat Simple_repeat 1 168 0 2 1490 312 212 30 15 chr3 118694699 118694766 -40905017 - HAL1-3A_ME LINE L1 -846 2012 1945 2 1490 21 36 0 0 chr3 118695103 118695131 -40904652 + AT_rich Low_complexity Low_complexity 1 28 0 2 1490 263 296 91 7 chr3 118696432 118696575 -40903208 + L1M3 LINE L1 4792 4946 -1194 2 1490 627 266 16 55 chr3 118696604 118696787 -40902996 + B3 SINE B2 36 211 -5 2 1490 367 300 169 11 chr3 118696798 118697073 -40902710 + L1M3 LINE L1 4994 5306 -837 2 1490 441 0 0 0 chr3 118697150 118697199 -40902584 + (TG)n Simple_repeat Simple_repeat 1 49 0 2 1490 280 146 0 38 chr3 118697199 118697264 -40902519 + L1M3 LINE L1 5397 5453 -727 2 1490 679 314 67 67 chr3 118697266 118697638 -40902145 - MTEa LTR MaLR -7 372 1 2 1490 1537 323 41 54 chr3 118697646 118698308 -40901475 - MTEa-int LTR MaLR -8 1572 920 2 1490 1824 182 35 62 chr3 118698369 118698803 -40900980 - RMER6C LTR ERVK -266 424 3 2 1490 260 236 137 33 chr3 118698894 118699047 -40900736 + L1MA7 LINE L1 6111 6279 -12 2 1490 26 64 0 0 chr3 118699138 118699185 -40900598 + AT_rich Low_complexity Low_complexity 1 47 0 2 1490 321 125 0 0 chr3 118699817 118699873 -40899910 + (CA)n Simple_repeat Simple_repeat 1 56 0 2 1490 447 68 0 0 chr3 118700122 118700181 -40899602 + (TCTA)n Simple_repeat Simple_repeat 4 62 0 2 1490 405 0 0 0 chr3 118700182 118700227 -40899556 + (TG)n Simple_repeat Simple_repeat 1 45 0 2 1490 198 171 0 0 chr3 118700815 118700856 -40898927 + GA-rich Low_complexity Low_complexity 4 44 0 2 1490 232 272 12 24 chr3 118701236 118701319 -40898464 + GA-rich Low_complexity Low_complexity 4 85 0 2 1490 525 304 108 5 chr3 118702504 118702699 -40897084 + ID_B1 SINE B4 3 217 -7 2 1490 1145 309 41 19 chr3 118702883 118703464 -40896319 - L1MA6 LINE L1 -115 6185 5592 2 1490 32 43 0 0 chr3 118706103 118706149 -40893634 + AT_rich Low_complexity Low_complexity 1 46 0 2 1490 606 100 0 0 chr3 118706628 118706728 -40893055 + (TG)n Simple_repeat Simple_repeat 1 100 0 2 1490 623 292 58 17 chr3 118706735 118706909 -40892874 - B4A SINE B4 0 292 112 2 1490 405 296 84 88 chr3 118707226 118707441 -40892342 - B3A SINE B2 -2 214 1 2 1490 851 329 71 22 chr3 118708391 118708801 -40890982 - MLT1H-int LTR MaLR -738 671 242 2 1490 238 382 46 37 chr3 118709363 118709778 -40890005 + L2a LINE L2 2960 3426 0 2 1490 366 23 0 0 chr3 118710005 118710048 -40889735 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 2 1490 21 0 0 0 chr3 118710228 118710249 -40889534 + AT_rich Low_complexity Low_complexity 1 21 0 2 1490 1163 235 32 76 chr3 118710977 118711311 -40888472 - Lx7 LINE L1 -5 7691 7364 2 1490 378 0 0 0 chr3 118711311 118711353 -40888430 + (CA)n Simple_repeat Simple_repeat 1 42 0 2 1490 1163 235 32 76 chr3 118711353 118711428 -40888355 - Lx7 LINE L1 -333 7363 7300 2 1490 13509 190 88 52 chr3 118711423 118712321 -40887462 - L1_Mur3 LINE L1 -783 5097 4205 3 1490 477 0 0 0 chr3 118712321 118712374 -40887409 + (TA)n Simple_repeat Simple_repeat 1 53 0 3 1490 4032 45 8 8 chr3 118712380 118712892 -40886891 - L1Md_F3 LINE L1 -1 6583 6072 3 1490 13509 190 88 52 chr3 118712892 118713458 -40886325 - L1_Mur3 LINE L1 -1701 4179 3605 3 1490 4197 69 2 0 chr3 118713458 118713995 -40885788 + L1Md_T LINE L1 6043 6580 -2 3 1490 13509 190 88 52 chr3 118713995 118714532 -40885251 - L1_Mur3 LINE L1 -2276 3604 3088 3 1490 423 0 0 0 chr3 118714532 118714579 -40885204 + (CA)n Simple_repeat Simple_repeat 2 48 0 3 1490 13509 190 88 52 chr3 118714579 118715529 -40884254 - L1_Mur3 LINE L1 -2793 3087 2071 3 1490 519 107 0 0 chr3 118715529 118715613 -40884170 + (TG)n Simple_repeat Simple_repeat 2 85 0 3 1490 13509 190 88 52 chr3 118715613 118716202 -40883581 - L1_Mur3 LINE L1 -3810 2070 1389 3 1490 4346 92 3 0 chr3 118716202 118716792 -40882991 - L1_Mus1 LINE L1 -1 6566 5975 3 1490 13509 190 88 52 chr3 118716792 118716829 -40882954 - L1_Mur3 LINE L1 -4492 1388 1365 3 1490 212 0 36 0 chr3 118716829 118716857 -40882926 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 3 1490 13509 230 63 45 chr3 118716857 118718370 -40881413 - L1_Mur3 LINE L1 -4516 1364 17 3 1490 524 15 15 0 chr3 118720380 118720445 -40879338 + (CA)n Simple_repeat Simple_repeat 1 66 0 3 1490 275 293 147 0 chr3 118720476 118720551 -40879232 - B4 SINE B4 -4 288 203 3 1490 275 352 28 0 chr3 118720586 118720694 -40879089 - B4A SINE B4 -180 112 2 3 1490 510 212 234 27 chr3 118721944 118722128 -40877655 - Tigger7 DNA MER2_type -120 2371 2150 3 1490 199 358 139 34 chr3 118722309 118722517 -40877266 + L2 LINE L2 2666 2895 -524 3 1490 3506 175 71 7 chr3 118722912 118723615 -40876168 + L1_Mur2 LINE L1 4290 5037 -840 3 1490 1472 194 67 14 chr3 118723615 118723912 -40875871 + MTC LTR MaLR 109 421 0 3 1490 865 260 43 56 chr3 118726226 118726528 -40873255 + Tigger7 DNA MER2_type 2135 2432 -59 3 1490 231 289 122 52 chr3 118726553 118726783 -40873000 - L1MB7 LINE L1 -108 6076 5831 3 1490 410 0 20 0 chr3 118727116 118727166 -40872617 + (TTTTA)n Simple_repeat Simple_repeat 2 52 0 3 1490 1075 56 7 14 chr3 118727284 118727419 -40872364 + B1_Mm SINE Alu 1 136 -11 3 1490 225 0 0 0 chr3 118727419 118727444 -40872339 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 3 1490 474 18 0 0 chr3 118728594 118728649 -40871134 + (CA)n Simple_repeat Simple_repeat 2 56 0 3 1490 3361 92 26 2 chr3 118728933 118729423 -40870360 + L1_Mus3 LINE L1 6090 6591 -47 3 1490 595 128 67 0 chr3 118729423 118729587 -40870196 + GA-rich Low_complexity Low_complexity 2 176 0 3 1490 351 186 7 15 chr3 118729587 118729723 -40870060 + L1_Mus4 LINE L1 6502 6636 0 3 1490 723 251 92 12 chr3 118729727 118729900 -40869883 + B3 SINE B2 27 213 -3 3 1490 574 348 45 37 chr3 118730599 118730868 -40868915 - B4A SINE B4 -21 271 1 3 1490 545 320 0 43 chr3 118732709 118732872 -40866911 + RSINE1 SINE B4 10 165 0 3 1490 657 290 31 9 chr3 118733019 118733242 -40866541 + Lx7 LINE L1 7193 7420 -276 3 1490 426 198 72 0 chr3 118733317 118733428 -40866355 + Lx7 LINE L1 7559 7677 -19 3 1490 188 322 17 0 chr3 118733477 118733536 -40866247 - MIRm SINE MIR -128 148 89 3 1490 331 287 18 18 chr3 118733610 118733720 -40866063 + PB1D10 SINE Alu 1 110 -7 3 1490 1080 268 97 19 chr3 118734124 118734496 -40865287 + MTD LTR MaLR 5 405 -14 3 1490 213 39 0 0 chr3 118734556 118734582 -40865201 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 3 1490 346 106 0 0 chr3 118734590 118734637 -40865146 - Lx9 LINE L1 -439 7205 7159 3 1490 409 290 64 61 chr3 118734810 118735097 -40864686 - L1MD LINE L1 -462 5702 5428 3 1490 21 57 0 0 chr3 118735296 118735331 -40864452 + AT_rich Low_complexity Low_complexity 1 35 0 3 1490 413 191 0 9 chr3 118735433 118735539 -40864244 + (CA)n Simple_repeat Simple_repeat 2 106 0 3 1490 352 45 0 0 chr3 118735576 118735620 -40864163 + HAL1-3A_ME LINE L1 1977 2020 -838 3 1490 199 123 35 17 chr3 118735688 118735746 -40864037 + T-rich Low_complexity Low_complexity 3 61 0 3 1490 456 198 0 70 chr3 118735746 118735860 -40863923 - B1_Mus2 SINE Alu 0 147 42 3 1490 264 0 0 159 chr3 118735863 118735995 -40863788 + (CTCTG)n Simple_repeat Simple_repeat 5 115 0 3 1490 292 167 0 62 chr3 118735996 118736060 -40863723 - B1_Mur4 SINE Alu -90 60 1 3 1490 492 18 0 0 chr3 118736119 118736176 -40863607 + (TA)n Simple_repeat Simple_repeat 1 57 0 3 1490 315 0 0 0 chr3 118736307 118736342 -40863441 + (TA)n Simple_repeat Simple_repeat 1 35 0 3 1490 3398 45 7 2 chr3 118736578 118737005 -40862778 - L1Md_F2 LINE L1 -2 6580 6152 3 1490 899 44 0 9 chr3 118737005 118737114 -40862669 + L1Md_F2 LINE L1 6038 6146 -438 3 1490 423 0 0 0 chr3 118737307 118737354 -40862429 + (TATG)n Simple_repeat Simple_repeat 2 48 0 3 1490 455 165 8 45 chr3 118737354 118737487 -40862296 - Lx3A LINE L1 -11 6970 6843 3 1490 823 88 72 0 chr3 118737487 118737612 -40862171 + Lx3A LINE L1 6708 6841 -140 3 1490 21 0 0 0 chr3 118737954 118737975 -40861808 + AT_rich Low_complexity Low_complexity 1 21 0 3 1490 198 0 0 0 chr3 118738144 118738166 -40861617 + (TA)n Simple_repeat Simple_repeat 2 23 0 3 1490 734 124 8 0 chr3 118738882 118739003 -40860780 + (GA)n Simple_repeat Simple_repeat 1 122 0 3 1490 653 313 60 26 chr3 118739200 118739466 -40860317 + B4A SINE B4 4 278 -14 3 1490 3355 42 0 0 chr3 118739973 118740373 -40859410 - L1Md_F3 LINE L1 -260 6324 5925 3 1490 1991 37 0 8 chr3 118740376 118740624 -40859159 + L1Md_F3 LINE L1 6325 6570 -14 3 1490 319 287 7 154 chr3 118740639 118740775 -40859008 - RSINE1 SINE B4 -47 118 3 3 1490 483 238 10 0 chr3 118740948 118741049 -40858734 - MLT1A1 LTR MaLR -11 397 296 3 1490 381 22 0 0 chr3 118741317 118741363 -40858420 + (CAA)n Simple_repeat Simple_repeat 3 48 0 3 1490 459 0 0 0 chr3 118741383 118741434 -40858349 + (AAATG)n Simple_repeat Simple_repeat 1 51 0 3 1490 243 258 48 97 chr3 118741498 118741601 -40858182 - MLT1A1 LTR MaLR -1 407 310 3 1490 964 255 69 57 chr3 118742857 118743220 -40856563 + MT2A LTR ERVL 1 473 -128 3 1490 593 207 52 0 chr3 118743584 118743700 -40856083 - ETnERV2-int LTR ERVK -214 7192 7071 3 1490 325 232 61 68 chr3 118743702 118743817 -40855966 + MT2A LTR ERVL 387 499 -34 3 1490 369 0 0 0 chr3 118743817 118743858 -40855925 + (TAGA)n Simple_repeat Simple_repeat 2 42 0 3 1490 325 232 61 68 chr3 118743858 118743890 -40855893 + MT2A LTR ERVL 500 533 0 3 1490 4720 205 46 32 chr3 118743910 118745024 -40854759 + MERVL_2A-int LTR ERVL 25 1153 -4608 3 1490 42 36 0 0 chr3 118745024 118745080 -40854703 + AT_rich Low_complexity Low_complexity 1 56 0 3 1490 2882 209 35 7 chr3 118745080 118745683 -40854100 + MERVL_2A-int LTR ERVL 1381 2000 -3761 3 1490 617 268 127 16 chr3 118746768 118747083 -40852700 - L1M2 LINE L1 -639 5673 5324 3 1490 265 292 0 0 chr3 118747190 118747255 -40852528 + (TG)n Simple_repeat Simple_repeat 2 66 0 3 1490 696 311 117 21 chr3 118747256 118747596 -40852187 + L1MA9 LINE L1 5798 6155 -157 3 1490 222 37 0 0 chr3 118747596 118747623 -40852160 + (CA)n Simple_repeat Simple_repeat 2 28 0 3 1490 696 311 117 21 chr3 118747623 118747752 -40852031 + L1MA9 LINE L1 6156 6312 0 3 1490 764 233 70 62 chr3 118748112 118748395 -40851388 + ORR1D1 LTR MaLR 53 374 0 3 1490 303 130 0 0 chr3 118749488 118749542 -40850241 + (CA)n Simple_repeat Simple_repeat 2 55 0 3 1491 643 286 69 15 chr3 118751239 118751441 -40848342 - B3 SINE B2 -3 213 1 3 1491 299 330 33 88 chr3 118751625 118751935 -40847848 + MER58B DNA MER1_type 9 300 -41 3 1491 263 177 16 0 chr3 118753204 118753266 -40846517 + (TA)n Simple_repeat Simple_repeat 1 63 0 3 1491 34 0 0 0 chr3 118753276 118753310 -40846473 + AT_rich Low_complexity Low_complexity 1 34 0 3 1491 503 148 0 18 chr3 118753322 118753432 -40846351 + Lx9 LINE L1 7534 7641 -3 3 1491 464 317 24 0 chr3 118753462 118753585 -40846198 - RSINE1 SINE B4 -36 129 4 3 1491 631 221 86 22 chr3 118754858 118754997 -40844786 + B1_Mur2 SINE Alu 1 148 -1 3 1491 570 322 42 64 chr3 118755454 118755766 -40844017 + MTD LTR MaLR 17 321 -98 3 1491 1106 243 96 30 chr3 118756066 118756460 -40843323 - RMER5 LTR ERV1 -83 451 32 3 1491 3748 115 10 24 chr3 118757335 118757930 -40841853 - Lx3B LINE L1 0 6973 6387 3 1491 201 121 0 0 chr3 118758044 118758077 -40841706 + (T)n Simple_repeat Simple_repeat 1 33 0 3 1491 284 85 0 41 chr3 118758131 118758180 -40841603 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 3 1491 2856 172 112 12 chr3 118758623 118759278 -40840505 - RMER6D LTR ERVK 0 720 1 3 1491 793 28 9 9 chr3 118759448 118759557 -40840226 + (TA)n Simple_repeat Simple_repeat 1 109 0 3 1491 246 279 23 0 chr3 118761342 118761428 -40838355 + GA-rich Low_complexity Low_complexity 1 88 0 3 1491 2809 151 93 14 chr3 118762424 118762509 -40837274 + RMER6D LTR ERVK 1 85 -635 3 1491 3383 30 5 0 chr3 118762509 118762903 -40836880 - MTA_Mm LTR MaLR 0 396 1 3 1491 2809 153 105 17 chr3 118762903 118763435 -40836348 + RMER6D LTR ERVK 86 690 0 3 1491 573 265 22 22 chr3 118763481 118763616 -40836167 + ID_B1 SINE B4 90 224 0 3 1491 255 31 0 0 chr3 118763947 118763979 -40835804 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 3 1491 914 237 52 76 chr3 118765036 118765419 -40834364 - ORR1D1 LTR MaLR 0 374 1 3 1491 222 231 0 0 chr3 118765498 118765589 -40834194 + CT-rich Low_complexity Low_complexity 2 92 0 3 1491 291 250 13 0 chr3 118767203 118767279 -40832504 + (TA)n Simple_repeat Simple_repeat 1 77 0 3 1491 23 0 0 0 chr3 118767540 118767563 -40832220 + AT_rich Low_complexity Low_complexity 1 23 0 3 1491 23 54 0 0 chr3 118768038 118768075 -40831708 + AT_rich Low_complexity Low_complexity 1 37 0 3 1491 233 297 31 0 chr3 118768879 118768943 -40830840 - L3 LINE CR1 -270 4219 4154 3 1491 376 322 62 14 chr3 118769243 118769388 -40830395 - MIR SINE MIR -23 239 88 3 1491 396 97 0 0 chr3 118770729 118770791 -40828992 + (TA)n Simple_repeat Simple_repeat 2 63 0 3 1491 1143 75 0 0 chr3 118770844 118770990 -40828793 - B1_Mus1 SINE Alu 0 148 3 3 1491 795 97 0 0 chr3 118770991 118771105 -40828678 + (TTCC)n Simple_repeat Simple_repeat 4 117 0 3 1491 358 188 21 0 chr3 118771105 118771201 -40828582 + CT-rich Low_complexity Low_complexity 2 99 0 3 1491 860 260 36 58 chr3 118771640 118771918 -40827865 + B4A SINE B4 1 272 -20 3 1491 25 21 0 59 chr3 118772019 118772070 -40827713 + AT_rich Low_complexity Low_complexity 1 48 0 3 1491 227 122 20 0 chr3 118772242 118772291 -40827492 + (TTTTTG)n Simple_repeat Simple_repeat 3 52 0 3 1491 478 323 45 0 chr3 118772296 118772429 -40827354 - ID_B1 SINE B4 0 224 86 3 1491 549 0 0 0 chr3 118772614 118772675 -40827108 + (TC)n Simple_repeat Simple_repeat 2 62 0 3 1491 578 51 13 0 chr3 118772724 118772802 -40826981 + (TG)n Simple_repeat Simple_repeat 1 79 0 4 1491 1175 243 26 121 chr3 118772812 118773201 -40826582 + MTD LTR MaLR 33 384 -35 4 1491 301 264 14 0 chr3 118773299 118773371 -40826412 + B3 SINE B2 4 76 -140 4 1491 390 293 68 48 chr3 118773395 118773542 -40826241 + B3 SINE B2 67 216 0 4 1491 27 49 0 0 chr3 118774899 118774940 -40824843 + AT_rich Low_complexity Low_complexity 1 41 0 4 1491 272 214 247 0 chr3 118774954 118775043 -40824740 + PB1D9 SINE Alu 1 111 -9 4 1491 405 39 0 0 chr3 118775046 118775097 -40824686 + (CATA)n Simple_repeat Simple_repeat 2 52 0 4 1491 282 56 0 0 chr3 118775544 118775580 -40824203 + (TG)n Simple_repeat Simple_repeat 1 36 0 4 1491 956 318 106 76 chr3 118775613 118776294 -40823489 - Lx9 LINE L1 -248 7396 6696 4 1491 250 34 66 33 chr3 118776522 118776583 -40823200 + (CAAA)n Simple_repeat Simple_repeat 2 64 0 4 1491 432 0 0 0 chr3 118776820 118776868 -40822915 + (TG)n Simple_repeat Simple_repeat 2 49 0 4 1491 315 286 60 27 chr3 118777002 118777185 -40822598 + L1MEc LINE L1 735 923 -5477 4 1491 411 339 17 0 chr3 118777496 118777614 -40822169 + B1F SINE Alu 1 120 -29 4 1491 880 263 134 44 chr3 118777648 118778081 -40821702 + RLTR12B LTR ERVK 47 518 -10 4 1491 1038 63 0 34 chr3 118778233 118778365 -40821418 + B1_Mus1 SINE Alu 7 138 -10 4 1491 431 35 18 0 chr3 118778365 118778422 -40821361 + (TAAA)n Simple_repeat Simple_repeat 2 59 0 4 1491 1038 63 0 34 chr3 118778422 118778436 -40821347 + B1_Mus1 SINE Alu 139 148 0 4 1491 324 251 81 15 chr3 118778436 118778636 -40821147 + L1MEc LINE L1 2324 2542 -3777 4 1491 325 381 31 6 chr3 118778683 118778844 -40820939 + L1MEc LINE L1 2584 2748 -3571 4 1491 310 305 111 25 chr3 118778862 118779447 -40820336 + L1M4 LINE L1 2614 3246 -2900 4 1491 28 0 0 0 chr3 118779460 118779488 -40820295 + AT_rich Low_complexity Low_complexity 1 28 0 4 1491 860 297 45 12 chr3 118779577 118779819 -40819964 - MTE2a LTR MaLR -2 377 128 4 1491 224 172 17 0 chr3 118780832 118780890 -40818893 + CT-rich Low_complexity Low_complexity 1 59 0 4 1491 378 74 0 0 chr3 118781050 118781104 -40818679 + (TTTA)n Simple_repeat Simple_repeat 3 56 0 4 1491 1871 278 65 41 chr3 118781104 118782275 -40817508 - Lx6 LINE L1 -62 7398 5980 4 1491 29 28 0 0 chr3 118782284 118782320 -40817463 + AT_rich Low_complexity Low_complexity 1 36 0 4 1491 351 0 0 0 chr3 118782839 118782878 -40816905 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 4 1491 902 36 0 0 chr3 118782944 118783056 -40816727 + B1_Mm SINE Alu 31 142 -5 4 1491 909 134 0 0 chr3 118783057 118783206 -40816577 + (GA)n Simple_repeat Simple_repeat 2 150 0 4 1491 546 63 0 0 chr3 118783509 118783588 -40816195 + (GGCTG)n Simple_repeat Simple_repeat 1 79 0 4 1491 266 225 49 12 chr3 118785144 118785225 -40814558 - MMAR1 DNA Mariner -1189 97 14 4 1491 4257 103 7 103 chr3 118785351 118786095 -40813688 - Lx LINE L1 0 6654 5983 4 1491 7186 150 26 0 chr3 118786095 118787385 -40812398 + L1_Mur1 LINE L1 2594 3917 -1969 4 1491 798 239 43 20 chr3 118787532 118787827 -40811956 - MYSERV-int LTR ERVK -4347 4612 4222 4 1491 312 150 0 0 chr3 118787829 118787889 -40811894 - MYSERV-int LTR ERVK -6178 2781 2722 4 1491 315 65 0 0 chr3 118787894 118787940 -40811843 + (T)n Simple_repeat Simple_repeat 1 46 0 4 1491 729 163 0 9 chr3 118787942 118788115 -40811668 - MYSERV6-int LTR ERVK -6233 2726 2541 4 1491 396 0 0 0 chr3 118788278 118788322 -40811461 + (CA)n Simple_repeat Simple_repeat 1 44 0 4 1491 588 50 0 0 chr3 118788322 118788402 -40811381 + (GA)n Simple_repeat Simple_repeat 1 80 0 4 1491 787 139 18 21 chr3 118788399 118788710 -40811073 + GA-rich Low_complexity Low_complexity 1 310 0 4 1491 254 188 16 0 chr3 118788712 118788741 -40811042 + polypurine Low_complexity Low_complexity 3 32 0 4 1491 931 74 22 43 chr3 118788741 118788925 -40810858 + (GAGAA)n Simple_repeat Simple_repeat 1 180 0 4 1491 254 188 16 0 chr3 118788925 118788959 -40810824 + polypurine Low_complexity Low_complexity 33 66 0 4 1491 417 20 0 0 chr3 118789555 118789605 -40810178 + (CA)n Simple_repeat Simple_repeat 1 50 0 4 1491 223 178 0 0 chr3 118790031 118790076 -40809707 + (TAA)n Simple_repeat Simple_repeat 3 47 0 4 1491 325 0 44 0 chr3 118790511 118790556 -40809227 + (TTG)n Simple_repeat Simple_repeat 2 48 0 4 1491 197 243 91 91 chr3 118790639 118790793 -40808990 + L2a LINE L2 3272 3425 -1 4 1491 1223 259 227 29 chr3 118791291 118791700 -40808083 - RLTR18 LTR ERVK -9 503 14 4 1491 405 362 80 0 chr3 118792395 118792558 -40807225 + B3A SINE B2 1 176 -22 4 1491 351 0 0 0 chr3 118792561 118792600 -40807183 + (TAAA)n Simple_repeat Simple_repeat 4 42 0 4 1491 228 23 21 64 chr3 118792802 118792849 -40806934 + (CAAAAA)n Simple_repeat Simple_repeat 3 47 0 4 1491 341 283 90 48 chr3 118792995 118793140 -40806643 - RSINE1 SINE B4 -2 163 13 4 1491 324 0 0 0 chr3 118793483 118793519 -40806264 + (A)n Simple_repeat Simple_repeat 1 36 0 4 1491 730 287 91 26 chr3 118794912 118795326 -40804457 + L1M2 LINE L1 5254 5688 -612 4 1491 610 139 28 28 chr3 118795455 118795632 -40804151 + (TCTA)n Simple_repeat Simple_repeat 3 179 0 4 1491 183 42 0 0 chr3 118795830 118795854 -40803929 + (CAA)n Simple_repeat Simple_repeat 3 26 0 4 1491 476 300 9 0 chr3 118796812 118796922 -40802861 + PB1D7 SINE Alu 1 111 -9 4 1491 229 315 25 85 chr3 118796906 118797024 -40802759 + MT2B LTR ERVL 130 240 -361 4 1491 427 321 9 0 chr3 118796946 118797058 -40802725 + B1_Mus2 SINE Alu 5 117 -30 4 1491 207 313 0 35 chr3 118797073 118797159 -40802624 + GA-rich Low_complexity Low_complexity 2 84 0 4 1491 207 0 0 0 chr3 118797433 118797456 -40802327 + (TTTTTA)n Simple_repeat Simple_repeat 2 24 0 4 1491 4780 68 3 0 chr3 118798871 118799491 -40800292 - L1Md_F2 LINE L1 0 6582 5961 4 1491 612 315 25 0 chr3 118800413 118800613 -40799170 + B3 SINE B2 1 205 -11 4 1491 333 0 0 0 chr3 118801120 118801157 -40798626 + (TTA)n Simple_repeat Simple_repeat 3 39 0 4 1491 7134 110 20 2 chr3 118801157 118802995 -40796788 - L1_Mus4 LINE L1 -19 6617 5000 4 1491 416 114 71 0 chr3 118802983 118803053 -40796730 - L1_Mur2 LINE L1 -1436 4441 4367 4 1491 404 231 59 8 chr3 118803753 118803871 -40795912 + Lx9 LINE L1 7368 7491 -153 4 1491 21 71 0 0 chr3 118803871 118803913 -40795870 + AT_rich Low_complexity Low_complexity 1 42 0 4 1491 187 328 83 62 chr3 118804141 118804333 -40795450 - L2 LINE L2 -834 2585 2390 4 1491 255 256 189 44 chr3 118804438 118804618 -40795165 + Lx4B LINE L1 6851 7056 -2 4 1491 194 0 39 0 chr3 118805749 118805775 -40794008 + (TG)n Simple_repeat Simple_repeat 2 28 0 4 1491 277 130 35 252 chr3 118805964 118806190 -40793593 + RMER17C LTR ERVK 99 275 -135 4 1491 556 278 34 44 chr3 118806218 118806521 -40793262 + Lx7 LINE L1 5589 5888 -1585 4 1491 303 297 179 48 chr3 118806624 118806769 -40793014 + RSINE1 SINE B4 2 165 0 4 1491 209 197 0 15 chr3 118808025 118808092 -40791691 + (TG)n Simple_repeat Simple_repeat 1 66 0 4 1491 916 309 37 22 chr3 118808168 118808436 -40791347 - B4A SINE B4 0 292 21 4 1491 510 31 0 0 chr3 118808740 118808804 -40790979 + (TCTA)n Simple_repeat Simple_repeat 2 65 0 4 1491 429 297 146 35 chr3 118808978 118809177 -40790606 + B4A SINE B4 60 280 -12 4 1491 47 33 0 0 chr3 118809293 118809354 -40790429 + AT_rich Low_complexity Low_complexity 1 61 0 4 1491 342 0 0 0 chr3 118809604 118809642 -40790141 + (TAAA)n Simple_repeat Simple_repeat 3 40 0 4 1491 780 77 0 0 chr3 118810018 118810135 -40789648 + (CA)n Simple_repeat Simple_repeat 2 118 0 4 1491 22 35 0 0 chr3 118810317 118810346 -40789437 + AT_rich Low_complexity Low_complexity 1 29 0 4 1491 206 137 39 19 chr3 118810471 118810511 -40789272 + (TA)n Simple_repeat Simple_repeat 1 42 0 4 1491 432 55 0 0 chr3 118810511 118810566 -40789217 + (TG)n Simple_repeat Simple_repeat 2 56 0 4 1491 206 137 39 19 chr3 118810566 118810577 -40789206 + (TA)n Simple_repeat Simple_repeat 2 12 0 4 1491 24 0 0 0 chr3 118811434 118811458 -40788325 + AT_rich Low_complexity Low_complexity 1 24 0 4 1491 238 305 0 47 chr3 118812569 118812655 -40787128 + B4 SINE B4 1 82 -210 4 1491 2031 198 35 15 chr3 118812979 118813385 -40786398 - MTC LTR MaLR -3 418 5 4 1491 2256 253 84 40 chr3 118815214 118816206 -40783577 + L1MC1 LINE L1 554 1588 -4920 4 1491 588 267 135 39 chr3 118816297 118816609 -40783174 + L1MC1 LINE L1 1780 2121 -4387 4 1491 1618 276 93 96 chr3 118816669 118817651 -40782132 + L1MC1 LINE L1 2285 3271 -3050 4 1491 1264 232 32 32 chr3 118817651 118818025 -40781758 - ORR1D1 LTR MaLR 0 374 1 4 1491 1618 276 93 96 chr3 118818025 118818745 -40781038 + L1MC1 LINE L1 3272 3982 -2339 4 1491 1110 262 158 33 chr3 118818753 118819631 -40780152 + L1MC1 LINE L1 5511 6498 -10 4 1491 421 174 22 15 chr3 118819700 118819834 -40779949 + (TG)n Simple_repeat Simple_repeat 1 135 0 4 1491 1707 54 5 5 chr3 118820155 118820379 -40779404 - L1Md_F3 LINE L1 -14 6570 6347 4 1491 308 176 0 14 chr3 118820609 118820678 -40779105 + (TATG)n Simple_repeat Simple_repeat 1 68 0 4 1491 515 363 100 44 chr3 118821271 118821749 -40778034 - MLT1H LTR MaLR -6 543 39 4 1491 304 356 132 4 chr3 118821839 118822073 -40777710 + MIRc SINE MIR 2 265 -3 4 1491 644 222 20 20 chr3 118822230 118822377 -40777406 - B1_Mus2 SINE Alu 0 147 1 4 1491 1807 206 12 35 chr3 118822903 118823306 -40776477 + ORR1B1 LTR MaLR 1 394 0 4 1491 1058 218 153 8 chr3 118823690 118824003 -40775780 - MTD LTR MaLR -14 405 46 4 1491 540 0 0 0 chr3 118824019 118824079 -40775704 + (TA)n Simple_repeat Simple_repeat 1 60 0 4 1491 376 316 8 66 chr3 118824215 118824337 -40775446 - B1F2 SINE Alu -34 115 1 4 1491 1831 203 32 6 chr3 118825442 118825784 -40773999 + ORR1B2 LTR MaLR 1 351 -16 4 1491 187 347 74 74 chr3 118826055 118826435 -40773348 + L2a LINE L2 1332 1711 -1708 4 1491 2607 39 3 21 chr3 118826456 118826793 -40772990 + L1Md_F3 LINE L1 6252 6582 -2 4 1491 803 241 67 136 chr3 118826895 118827241 -40772542 + MTE2a LTR MaLR 57 378 -1 4 1491 234 361 16 32 chr3 118827284 118827410 -40772373 + L2a LINE L2 1917 2040 -1379 4 1491 2378 177 78 85 chr3 118827410 118827977 -40771806 - RMER15 LTR ERVL -11 564 2 4 1491 270 364 63 60 chr3 118828058 118828409 -40771374 + L2a LINE L2 2237 2588 -831 4 1491 192 330 68 0 chr3 118828984 118829072 -40770711 + L2a LINE L2 3324 3417 -9 4 1491 286 219 41 20 chr3 118829441 118829539 -40770244 + Tigger14a DNA MER2_type 106 205 -119 5 1491 244 270 47 16 chr3 118829689 118829753 -40770030 - ID SINE ID -157 67 2 5 1491 2508 187 21 14 chr3 118830482 118831002 -40768781 - RLTR28 LTR ERVL 0 524 1 5 1491 683 145 26 98 chr3 118831356 118831509 -40768274 + B1_Mur4 SINE Alu 1 142 -8 5 1491 231 109 43 21 chr3 118831527 118831574 -40768209 + (CAAA)n Simple_repeat Simple_repeat 1 48 0 5 1491 2239 50 0 7 chr3 118832266 118832550 -40767233 + L1Md_F2 LINE L1 6288 6569 -13 5 1491 335 316 11 50 chr3 118832823 118833026 -40766757 + CT-rich Low_complexity Low_complexity 1 195 0 5 1491 456 176 182 8 chr3 118833389 118833521 -40766262 - Lx5 LINE L1 -1 7049 6895 5 1491 620 180 8 8 chr3 118833774 118833897 -40765886 - URR1B DNA MER1_type 0 225 103 5 1491 545 322 7 0 chr3 118835183 118835326 -40764457 + B4A SINE B4 1 144 -148 5 1491 14209 64 1 1 chr3 118835326 118837245 -40762538 + L1Md_F2 LINE L1 3667 5586 -297 5 1491 8297 37 1 2 chr3 118837246 118838228 -40761555 + L1Md_F2 LINE L1 5588 6568 -14 5 1491 183 42 0 0 chr3 118839890 118839914 -40759869 + (GTTTG)n Simple_repeat Simple_repeat 2 25 0 5 1491 522 114 0 0 chr3 118840467 118840555 -40759228 + (TG)n Simple_repeat Simple_repeat 1 88 0 5 1491 873 0 0 0 chr3 118840571 118840668 -40759115 + (TATATG)n Simple_repeat Simple_repeat 4 100 0 5 1491 448 272 48 10 chr3 118840668 118840772 -40759011 - B4A SINE B4 -13 279 172 5 1491 729 303 52 16 chr3 118840773 118840869 -40758914 - Lx8 LINE L1 -525 6948 6848 5 1491 891 19 0 0 chr3 118840869 118840974 -40758809 + (CA)n Simple_repeat Simple_repeat 1 105 0 5 1491 729 303 52 16 chr3 118840974 118841182 -40758601 - Lx8 LINE L1 -626 6847 6633 5 1491 1023 90 30 0 chr3 118841633 118841767 -40758016 + B1_Mm SINE Alu 1 138 -9 5 1491 237 0 116 0 chr3 118841767 118841810 -40757973 + (CAAA)n Simple_repeat Simple_repeat 2 49 0 5 1491 184 208 173 49 chr3 118842043 118842124 -40757659 + MIRc SINE MIR 16 106 -162 5 1491 579 289 13 51 chr3 118844314 118844471 -40755312 + RSINE1 SINE B4 15 165 0 5 1491 669 311 18 31 chr3 118846115 118846344 -40753439 + B4A SINE B4 4 229 -63 5 1491 380 17 0 161 chr3 118846732 118847376 -40752407 + (TAGTG)n Simple_repeat Simple_repeat 1 540 0 5 1491 201 196 0 0 chr3 118848185 118848241 -40751542 + (CATATA)n Simple_repeat Simple_repeat 2 57 0 5 1491 591 15 0 0 chr3 118848331 118848399 -40751384 + (TA)n Simple_repeat Simple_repeat 2 69 0 5 1491 238 358 0 36 chr3 118848637 118848721 -40751062 + ID4_ SINE ID 3 83 0 5 1491 225 325 14 155 chr3 118848721 118848779 -40751004 + ID_B1 SINE B4 3 124 -100 5 1491 1253 89 22 6 chr3 118849358 118849539 -40750244 + B2_Mm2 SINE B2 1 184 -11 5 1491 459 52 0 0 chr3 118849539 118849597 -40750186 + (CA)n Simple_repeat Simple_repeat 2 59 0 5 1491 660 83 9 9 chr3 118849746 118849856 -40749927 - Lx LINE L1 0 6654 6545 5 1491 240 184 0 0 chr3 118850350 118850399 -40749384 + (TG)n Simple_repeat Simple_repeat 2 50 0 5 1491 260 179 0 29 chr3 118850470 118850539 -40749244 + (TTTA)n Simple_repeat Simple_repeat 3 69 0 5 1491 558 343 13 79 chr3 118850542 118850770 -40749013 - B4 SINE B4 -78 214 2 5 1491 401 339 128 34 chr3 118851938 118852204 -40747579 + B4A SINE B4 2 292 0 5 1491 260 356 114 9 chr3 118853103 118853208 -40746575 + PB1D10 SINE Alu 1 116 -1 5 1491 238 379 93 16 chr3 118853208 118853295 -40746488 + B4A SINE B4 86 292 0 5 1491 357 169 24 16 chr3 118853298 118853424 -40746359 + (CAGAGA)n Simple_repeat Simple_repeat 2 128 0 5 1491 270 0 0 0 chr3 118854177 118854207 -40745576 + (TA)n Simple_repeat Simple_repeat 2 31 0 5 1491 1357 95 0 5 chr3 118854496 118854686 -40745097 + B2_Mm2 SINE B2 1 189 -6 5 1491 507 212 0 20 chr3 118855646 118855795 -40743988 + (TA)n Simple_repeat Simple_repeat 2 147 0 5 1491 202 61 61 0 chr3 118855818 118855851 -40743932 + (CAGAGA)n Simple_repeat Simple_repeat 4 38 0 5 1491 258 315 113 16 chr3 118856046 118856204 -40743579 - MIR SINE MIR -9 259 84 5 1491 785 280 44 44 chr3 118856302 118856552 -40743231 - B4 SINE B4 -36 256 7 5 1491 189 0 0 0 chr3 118856699 118856720 -40743063 + (TAAAA)n Simple_repeat Simple_repeat 1 21 0 5 1491 209 73 34 68 chr3 118856990 118857049 -40742734 + (CAAA)n Simple_repeat Simple_repeat 2 58 0 5 1491 484 308 63 0 chr3 118859382 118859525 -40740258 - B3A SINE B2 -46 152 1 5 1491 362 252 50 29 chr3 118859647 118859786 -40739997 - B1F1 SINE Alu -7 142 1 5 1491 375 308 35 23 chr3 118860670 118860843 -40738940 - Lx8 LINE L1 -109 7364 7190 5 1491 576 318 90 5 chr3 118860846 118861058 -40738725 - B4A SINE B4 -62 230 1 5 1491 2210 131 48 24 chr3 118861077 118861453 -40738330 - Lx2 LINE L1 -2 6995 6611 5 1491 2657 80 35 15 chr3 118861478 118861873 -40737910 - RLTR9D LTR ERVK 0 403 1 5 1491 738 135 181 31 chr3 118862552 118862712 -40737071 - B2_Mm2 SINE B2 -10 185 2 5 1491 1478 259 108 47 chr3 118863082 118863636 -40736147 - RLTR17 LTR ERVK 0 692 105 5 1491 480 269 56 69 chr3 118863752 118863935 -40735848 - B4A SINE B4 -93 199 11 5 1491 294 29 0 0 chr3 118864148 118864183 -40735600 + (CACCAT)n Simple_repeat Simple_repeat 1 35 0 5 1491 239 367 0 9 chr3 118864216 118864326 -40735457 - PB1D10 SINE Alu -8 109 1 5 1491 1283 232 79 64 chr3 118864523 118864893 -40734890 - ORR1D1 LTR MaLR -2 417 4 5 1491 381 22 0 0 chr3 118864992 118865038 -40734745 + (CA)n Simple_repeat Simple_repeat 2 47 0 5 1491 442 291 106 23 chr3 118865696 118865960 -40733823 + L1M5 LINE L1 3630 3915 -2231 5 1491 371 359 0 0 chr3 118866000 118866106 -40733677 + RSINE1 SINE B4 5 110 -55 5 1491 773 131 57 32 chr3 118866148 118866306 -40733477 + Lx LINE L1 6478 6639 -15 5 1491 360 0 0 0 chr3 118866315 118866355 -40733428 + (CA)n Simple_repeat Simple_repeat 2 41 0 5 1491 429 272 83 22 chr3 118868663 118868922 -40730861 + L1M5 LINE L1 5329 5597 -643 5 1491 240 35 0 0 chr3 118869243 118869272 -40730511 + (CA)n Simple_repeat Simple_repeat 1 29 0 5 1491 441 54 0 0 chr3 118869272 118869328 -40730455 + (TA)n Simple_repeat Simple_repeat 2 57 0 5 1491 710 248 34 19 chr3 118869459 118869665 -40730118 - B3 SINE B2 -6 210 2 5 1491 24 32 0 0 chr3 118869722 118869753 -40730030 + AT_rich Low_complexity Low_complexity 1 31 0 5 1491 259 238 15 45 chr3 118869765 118869831 -40729952 - B1F SINE Alu -25 124 61 5 1491 21 0 0 0 chr3 118871507 118871528 -40728255 + AT_rich Low_complexity Low_complexity 1 21 0 5 1491 1124 81 0 7 chr3 118873463 118873612 -40726171 + B1_Mus1 SINE Alu 1 148 0 5 1491 190 118 19 38 chr3 118873613 118873666 -40726117 + A-rich Low_complexity Low_complexity 3 54 0 5 1491 442 299 28 9 chr3 118873772 118873880 -40725903 + RSINE1 SINE B4 8 117 -48 5 1491 183 42 0 0 chr3 118876041 118876065 -40723718 + (CA)n Simple_repeat Simple_repeat 1 24 0 5 1491 930 258 87 2 chr3 118876272 118876656 -40723127 - Tigger12A DNA MER2_type -23 768 272 5 1491 484 232 261 6 chr3 118877264 118877429 -40722354 + URR1A DNA MER1_type 4 210 -16 5 1491 291 28 0 0 chr3 118878266 118878302 -40721481 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 5 1491 747 0 0 0 chr3 118878410 118878493 -40721290 + (TTTCC)n Simple_repeat Simple_repeat 4 86 0 5 1491 184 229 21 0 chr3 118879209 118879257 -40720526 + L2a LINE L2 3378 3426 0 5 1491 612 301 0 126 chr3 118879629 118879868 -40719915 + B3 SINE B2 1 209 -7 5 1491 472 323 0 8 chr3 118879906 118880034 -40719749 + B3A SINE B2 2 128 -70 5 1491 329 348 120 28 chr3 118880194 118880336 -40719447 - RSINE1 SINE B4 -8 157 3 5 1491 477 0 0 0 chr3 118880542 118880595 -40719188 + (TG)n Simple_repeat Simple_repeat 2 54 0 5 1491 635 263 133 145 chr3 118881274 118881785 -40717998 + RLTR18B LTR ERVK 109 613 -3 5 1491 556 258 0 15 chr3 118882040 118882174 -40717609 + MT2A LTR ERVL 1 132 -401 5 186 3150 199 51 13 chr3 118882193 118882882 -40716901 + MERVL_2A-int LTR ERVL 250 964 -4797 5 1492 541 316 46 7 chr3 118883035 118883188 -40716595 + B4 SINE B4 2 160 -132 5 1492 372 94 0 0 chr3 118883189 118883242 -40716541 + (CCTAG)n Simple_repeat Simple_repeat 2 54 0 5 1492 321 337 30 0 chr3 118883244 118883345 -40716438 + B4 SINE B4 181 284 -8 5 1492 411 56 0 0 chr3 118883363 118883417 -40716366 + (CA)n Simple_repeat Simple_repeat 1 54 0 5 1492 237 65 0 0 chr3 118884473 118884504 -40715279 + (TCTCCC)n Simple_repeat Simple_repeat 5 35 0 5 1492 377 329 19 50 chr3 118884663 118884681 -40715102 + ID_B1 SINE B4 69 219 -1 5 1492 661 246 36 0 chr3 118884681 118884819 -40714964 + B1_Mur2 SINE Alu 2 144 -5 5 1492 731 155 18 13 chr3 118884823 118885055 -40714728 + GA-rich Low_complexity Low_complexity 1 233 0 5 1492 308 327 97 57 chr3 118886756 118886931 -40712852 - B4A SINE B4 -35 257 76 5 1492 357 355 6 90 chr3 118886959 118887126 -40712657 - B4A SINE B4 -139 153 1 5 1492 478 41 27 0 chr3 118887397 118887470 -40712313 + (CA)n Simple_repeat Simple_repeat 2 76 0 5 1492 380 132 22 0 chr3 118887477 118887568 -40712215 + (CAGAGA)n Simple_repeat Simple_repeat 2 94 0 5 1492 1182 273 17 54 chr3 118887585 118888003 -40711780 + MTE2a LTR MaLR 1 379 0 5 1492 282 29 0 0 chr3 118888145 118888180 -40711603 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 5 1492 234 0 0 0 chr3 118890126 118890152 -40709631 + (TTAA)n Simple_repeat Simple_repeat 1 26 0 5 1492 317 190 0 25 chr3 118890357 118890438 -40709345 + GA-rich Low_complexity Low_complexity 1 79 0 5 1492 218 304 0 0 chr3 118890584 118890653 -40709130 + ID4 SINE ID 3 71 -12 5 1492 250 170 19 19 chr3 118890935 118890989 -40708794 - L2c LINE L2 0 3387 3334 6 1492 359 338 65 44 chr3 118891336 118891831 -40707952 - L1ME1 LINE L1 -125 6054 5550 6 1492 488 267 29 15 chr3 118892832 118892969 -40706814 - B1F1 SINE Alu -10 139 1 6 1492 288 77 0 0 chr3 118893245 118893284 -40706499 + (TG)n Simple_repeat Simple_repeat 2 40 0 6 1492 498 335 11 0 chr3 118893605 118893784 -40705999 - B3A SINE B2 -17 181 1 6 1492 1221 92 0 0 chr3 118893844 118894017 -40705766 + (TTCCC)n Simple_repeat Simple_repeat 4 176 0 6 1492 324 67 0 0 chr3 118894017 118894056 -40705727 + (TTTTC)n Simple_repeat Simple_repeat 5 43 0 6 1492 1427 33 6 0 chr3 118895067 118895248 -40704535 - L1Md_A LINE L1 -1 6581 6400 6 1492 533 255 50 85 chr3 118900289 118900490 -40699293 - B3A SINE B2 0 216 23 6 1492 21 0 0 0 chr3 118900521 118900542 -40699241 + AT_rich Low_complexity Low_complexity 1 21 0 6 1492 21 36 0 0 chr3 118900610 118900638 -40699145 + AT_rich Low_complexity Low_complexity 1 28 0 6 1492 457 338 84 42 chr3 118900679 118900732 -40699051 - Lx8 LINE L1 -191 7282 7225 6 1492 441 0 0 0 chr3 118900732 118900781 -40699002 + (TC)n Simple_repeat Simple_repeat 2 50 0 6 1492 195 69 0 0 chr3 118900781 118900809 -40698974 + (TG)n Simple_repeat Simple_repeat 2 30 0 6 1492 457 338 84 42 chr3 118900809 118901088 -40698695 - Lx8 LINE L1 -249 7224 6936 6 1492 584 286 17 50 chr3 118901268 118901448 -40698335 - B3A SINE B2 -5 193 20 6 1492 733 18 17 43 chr3 118902008 118902123 -40697660 + L1Md_F3 LINE L1 6473 6584 0 6 1492 249 33 0 0 chr3 118902491 118902521 -40697262 + (TG)n Simple_repeat Simple_repeat 2 31 0 6 1492 555 321 21 14 chr3 118902532 118902674 -40697109 - RSINE1 SINE B4 -20 145 3 6 1492 1201 48 0 0 chr3 118903374 118903521 -40696262 + B1_Mus2 SINE Alu 1 147 0 6 1492 438 20 0 0 chr3 118903521 118903572 -40696211 + (A)n Simple_repeat Simple_repeat 1 51 0 6 1492 204 179 0 0 chr3 118904272 118904311 -40695472 + (CGTG)n Simple_repeat Simple_repeat 1 39 0 6 1492 569 185 116 58 chr3 118906478 118906633 -40693150 + ORR1D1 LTR MaLR 1 164 -210 6 1492 180 111 0 0 chr3 118907885 118907912 -40691871 + (A)n Simple_repeat Simple_repeat 1 27 0 6 1492 22 35 0 0 chr3 118908026 118908055 -40691728 + AT_rich Low_complexity Low_complexity 1 29 0 6 1492 832 220 152 0 chr3 118908308 118908499 -40691284 - URR1B DNA MER1_type 0 225 6 6 1492 8033 50 0 3 chr3 118910748 118911746 -40688037 + L1Md_F2 LINE L1 5587 6581 -1 6 1492 287 169 97 14 chr3 118911909 118911981 -40687802 + L1M6 LINE L1 1750 1827 -4669 6 1492 378 0 0 0 chr3 118911986 118912028 -40687755 + (TG)n Simple_repeat Simple_repeat 2 43 0 6 1492 465 34 0 0 chr3 118912047 118912106 -40687677 + (CA)n Simple_repeat Simple_repeat 1 59 0 6 1492 818 204 25 6 chr3 118912131 118912294 -40687489 + MER5A DNA MER1_type 1 166 -23 6 1492 8274 36 0 0 chr3 118912624 118913692 -40686091 - L1Md_T LINE L1 0 6582 5515 6 1492 13806 17 67 1 chr3 118913687 118914178 -40685605 + L1_Mm LINE L1 3730 4332 -1551 6 1492 4240 52 0 0 chr3 118914178 118914696 -40685087 + L1Md_T LINE L1 6064 6581 -1 6 1492 13806 17 67 1 chr3 118914696 118915881 -40683902 + L1_Mm LINE L1 4333 5516 -367 6 1492 650 299 0 0 chr3 118915888 118916025 -40683758 - B1F1 SINE Alu -5 144 8 6 1492 525 178 93 0 chr3 118916923 118917030 -40682753 + B1_Mur4 SINE Alu 26 142 -8 6 1492 265 109 15 15 chr3 118917404 118917469 -40682314 + (TTTTTG)n Simple_repeat Simple_repeat 2 66 0 6 1492 252 380 24 16 chr3 118918194 118918317 -40681466 - L2 LINE L2 -626 2793 2670 6 1492 363 287 108 0 chr3 118918705 118918834 -40680949 + B1F SINE Alu 1 143 -6 6 1492 259 320 30 76 chr3 118919063 118919195 -40680588 - MTE2a LTR MaLR -14 365 240 6 1492 1160 192 85 85 chr3 118919652 118919959 -40679824 - Lx5 LINE L1 0 7050 6744 6 1492 3969 184 50 19 chr3 118920108 118920910 -40678873 - Lx5 LINE L1 -358 6692 5866 6 1492 343 159 43 64 chr3 118921114 118921208 -40678575 + B3A SINE B2 1 92 -106 6 1492 419 258 7 0 chr3 118921794 118921949 -40677834 + (TA)n Simple_repeat Simple_repeat 2 157 0 6 1492 192 182 0 0 chr3 118921965 118922009 -40677774 + (TA)n Simple_repeat Simple_repeat 1 44 0 6 1492 738 97 0 0 chr3 118923254 118923367 -40676416 + (GA)n Simple_repeat Simple_repeat 2 114 0 6 1492 296 300 12 0 chr3 118923372 118923452 -40676331 - RSINE1 SINE B4 -68 97 17 6 1492 393 331 28 7 chr3 118925179 118925322 -40674461 - RSINE1 SINE B4 -6 159 14 6 1492 319 227 72 208 chr3 118925336 118925586 -40674197 - B3 SINE B2 0 216 1 6 1492 261 226 0 0 chr3 118925722 118925775 -40674008 + (CA)n Simple_repeat Simple_repeat 2 54 0 6 1492 2047 128 24 59 chr3 118926143 118926484 -40673299 + ORR1A4 LTR MaLR 1 329 0 6 1492 475 242 10 0 chr3 118927077 118927176 -40672607 + ID_B1 SINE B4 123 222 -2 6 1492 236 324 37 9 chr3 118928020 118928129 -40671654 - Kanga2_a DNA Tc2 -722 166 55 6 1492 377 383 67 22 chr3 118928207 118928477 -40671306 + MLT1A LTR MaLR 3 284 -90 6 1492 471 244 43 36 chr3 118929596 118929736 -40670047 + B1F SINE Alu 1 141 -8 6 1492 207 0 0 0 chr3 118929738 118929761 -40670022 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 6 1492 1046 181 0 88 chr3 118930416 118930665 -40669118 - Lx LINE L1 -6 6648 6422 6 1492 567 0 0 0 chr3 118930771 118930834 -40668949 + (TTTTG)n Simple_repeat Simple_repeat 3 65 0 6 1492 1031 81 0 0 chr3 118930834 118930970 -40668813 - B1_Mus1 SINE Alu -12 136 1 6 1492 338 335 43 43 chr3 118931046 118931208 -40668575 - RSINE1 SINE B4 -2 163 2 6 1492 756 308 35 0 chr3 118931325 118931585 -40668198 - MTEa LTR MaLR -1 378 110 6 1492 706 292 81 103 chr3 118931649 118931997 -40667786 + MTE2a LTR MaLR 40 379 0 6 1492 1020 270 82 11 chr3 118933167 118933519 -40666264 + MTE2a LTR MaLR 3 379 0 6 1492 189 326 91 14 chr3 118933789 118933974 -40665809 - L2b LINE L2 -233 3142 2944 6 1492 474 156 31 10 chr3 118934043 118934140 -40665643 - L1_Mur2 LINE L1 -2941 2936 2838 6 1492 3845 50 10 28 chr3 118934153 118934663 -40665120 - L1Md_F2 LINE L1 0 6582 6082 6 1492 5047 58 9 5 chr3 118934663 118935334 -40664449 + L1_Mm LINE L1 3886 4559 -1324 6 1492 3755 177 114 4 chr3 118935337 118936153 -40663630 - L1_Mur2 LINE L1 -3038 2839 1934 6 1492 369 352 29 7 chr3 118936781 118936921 -40662862 + B1F SINE Alu 1 143 -6 6 1492 21 36 0 0 chr3 118937026 118937054 -40662729 + AT_rich Low_complexity Low_complexity 1 28 0 6 1492 577 295 35 57 chr3 118937064 118937294 -40662489 - Lx9 LINE L1 -448 7196 6972 6 1492 648 277 40 40 chr3 118937300 118937604 -40662179 + Lx9 LINE L1 7222 7525 -119 6 1492 4405 52 0 2 chr3 118937612 118938156 -40661627 + L1Md_F2 LINE L1 6038 6580 -2 6 1492 2113 12 141 0 chr3 118938180 118938436 -40661347 + RLTR10B LTR ERVK 1 292 0 6 1492 363 278 41 0 chr3 118938436 118938533 -40661250 - MLT1D LTR MaLR -404 101 1 6 1492 816 80 0 0 chr3 118939157 118939270 -40660513 + (TC)n Simple_repeat Simple_repeat 1 113 0 6 1492 486 49 0 0 chr3 118939271 118939332 -40660451 + (CA)n Simple_repeat Simple_repeat 1 61 0 6 1492 602 229 0 7 chr3 118940488 118940642 -40659141 + (TA)n Simple_repeat Simple_repeat 2 154 0 6 1492 308 218 0 0 chr3 118940645 118940700 -40659083 + HAL1-3A_ME LINE L1 1973 2027 -831 6 1492 684 0 0 0 chr3 118941245 118941321 -40658462 + (TA)n Simple_repeat Simple_repeat 2 77 0 6 1492 369 0 0 0 chr3 118944148 118944189 -40655594 + (TG)n Simple_repeat Simple_repeat 1 41 0 6 1492 397 187 45 82 chr3 118944258 118944392 -40655391 + Lx4B LINE L1 6928 7056 -2 6 1492 21 0 0 0 chr3 118944392 118944413 -40655370 + AT_rich Low_complexity Low_complexity 1 21 0 6 1492 210 191 0 0 chr3 118945152 118945194 -40654589 + T-rich Low_complexity Low_complexity 1 42 0 6 1492 2971 24 93 0 chr3 118946841 118947217 -40652566 - IAPLTR2a LTR ERVK 0 411 1 6 1492 270 81 0 0 chr3 118947317 118947354 -40652429 + (CAA)n Simple_repeat Simple_repeat 2 38 0 6 1492 25 31 0 0 chr3 118947630 118947662 -40652121 + AT_rich Low_complexity Low_complexity 1 32 0 6 1492 1832 197 27 24 chr3 118947698 118948067 -40651716 + ORR1C1 LTR MaLR 1 370 -8 6 1492 213 159 0 0 chr3 118948265 118948309 -40651474 + (TG)n Simple_repeat Simple_repeat 1 44 0 6 1492 478 307 108 42 chr3 118948319 118948849 -40650934 - L1ME3 LINE L1 -272 5890 5326 6 1492 23 68 0 0 chr3 118948912 118948956 -40650827 + AT_rich Low_complexity Low_complexity 1 44 0 6 1492 4486 89 8 18 chr3 118949755 118950385 -40649398 - L1_Mus3 LINE L1 0 6638 6015 6 1492 532 311 67 38 chr3 118950846 118951217 -40648566 - L1MA4 LINE L1 -373 5927 5546 6 1492 355 329 34 31 chr3 118951452 118951772 -40648011 - L1MA4 LINE L1 -869 5274 4954 6 1492 391 297 31 37 chr3 118951985 118952146 -40647637 - L1ME3 LINE L1 -1462 4684 4525 6 1492 768 260 23 12 chr3 118952197 118952368 -40647415 + MTE2a LTR MaLR 207 379 0 6 1492 470 316 83 44 chr3 118952724 118953244 -40646539 - L1ME3 LINE L1 -2309 3837 3298 6 1492 8757 108 27 1 chr3 118953809 118955853 -40643930 - L1_Mus3 LINE L1 -1 6637 4547 6 1492 1711 109 42 0 chr3 118955850 118956148 -40643635 + L1_Mus3 LINE L1 4191 4544 -1336 6 1492 1930 84 7 32 chr3 118956294 118956578 -40643205 + L1_Mus2 LINE L1 6289 6565 -1 6 1492 45 19 0 0 chr3 118956578 118956630 -40643153 + AT_rich Low_complexity Low_complexity 1 52 0 6 1492 745 262 89 64 chr3 118956764 118957045 -40642738 + B4A SINE B4 1 288 -4 6 1492 198 0 0 0 chr3 118958281 118958303 -40641480 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 6 1492 294 197 51 26 chr3 118958531 118958609 -40641174 + MIRc SINE MIR 93 172 -96 6 1492 260 256 22 127 chr3 118959845 118959979 -40639804 - MER94 DNA AcHobo -13 121 2 6 1492 184 391 65 27 chr3 118960180 118960364 -40639419 + MIRb SINE MIR 42 232 -36 6 1492 228 211 0 0 chr3 118960815 118960853 -40638930 + URR1B DNA MER1_type 1 38 -187 6 1492 326 156 0 15 chr3 118961120 118961185 -40638598 + GA-rich Low_complexity Low_complexity 3 66 0 6 1492 468 0 0 0 chr3 118961573 118961625 -40638158 + (TTA)n Simple_repeat Simple_repeat 2 53 0 6 1492 8516 30 0 2 chr3 118962524 118963779 -40636004 - L1Md_T LINE L1 0 6582 5334 7 1492 195 370 69 26 chr3 118964673 118964862 -40634921 - MIR SINE MIR -55 207 11 7 1492 332 280 86 91 chr3 118965390 118965610 -40634173 - HAL1-3A_ME LINE L1 -342 2516 2298 7 1492 327 49 0 0 chr3 118965908 118965949 -40633834 + (TAA)n Simple_repeat Simple_repeat 3 43 0 7 1492 685 275 103 56 chr3 118967318 118967714 -40632069 - L1MC1 LINE L1 -30 6303 5889 7 1492 840 48 0 0 chr3 118968132 118968237 -40631546 + (TG)n Simple_repeat Simple_repeat 2 106 0 7 1492 489 17 0 0 chr3 118968245 118968303 -40631480 + (GA)n Simple_repeat Simple_repeat 1 58 0 7 1492 271 182 0 15 chr3 118970279 118970346 -40629437 + Lx2B LINE L1 6935 7000 0 7 1492 11188 153 55 4 chr3 118970603 118971962 -40627821 - L1_Mur1 LINE L1 -2402 3484 2051 7 1492 492 18 0 0 chr3 118971962 118972019 -40627764 + (TG)n Simple_repeat Simple_repeat 1 57 0 7 1492 11188 152 42 7 chr3 118972019 118973026 -40626757 - L1_Mur1 LINE L1 -3836 2050 1006 7 1492 958 115 6 35 chr3 118973020 118973191 -40626592 + Lx3C LINE L1 4474 4639 -1238 7 1492 1170 103 21 11 chr3 118973191 118973377 -40626406 + MTB LTR MaLR 1 188 -208 7 1492 7718 74 1 6 chr3 118973377 118974688 -40625095 + L1_Mus1 LINE L1 5262 6565 -2 7 1492 858 47 0 0 chr3 118974696 118974803 -40624980 + (GAAA)n Simple_repeat Simple_repeat 3 109 0 7 1492 1500 77 0 19 chr3 118974803 118975015 -40624768 + MTB LTR MaLR 193 400 0 7 1492 7108 155 24 7 chr3 118975015 118977101 -40622682 + Lx3C LINE L1 4644 6758 -218 7 1492 549 0 0 0 chr3 118977101 118977162 -40622621 + (TA)n Simple_repeat Simple_repeat 2 62 0 7 1492 6708 160 31 10 chr3 118977162 118977199 -40622584 + Lx3C LINE L1 6759 6804 -172 7 1492 672 286 13 7 chr3 118977207 118977362 -40622421 + RSINE1 SINE B4 8 163 -2 7 1492 232 238 0 0 chr3 118977364 118977406 -40622377 + (CA)n Simple_repeat Simple_repeat 1 42 0 7 1492 252 377 57 0 chr3 118978250 118978356 -40621427 + L2 LINE L2 1218 1329 -2090 7 1492 972 33 0 0 chr3 118978710 118978831 -40620952 + B1_Mus1 SINE Alu 28 148 0 7 1492 232 91 54 18 chr3 118978834 118978890 -40620893 + A-rich Low_complexity Low_complexity 3 60 0 7 1492 478 67 27 0 chr3 118978995 118979070 -40620713 + (CA)n Simple_repeat Simple_repeat 2 78 0 7 1492 317 326 20 0 chr3 118979334 118979432 -40620351 + B4A SINE B4 147 246 -46 7 1492 550 257 82 116 chr3 118979560 118979994 -40619789 + L1M3 LINE L1 5211 5633 -679 7 1492 611 26 0 13 chr3 118980012 118980090 -40619693 + (TC)n Simple_repeat Simple_repeat 2 78 0 7 1492 22 70 0 0 chr3 118981138 118981181 -40618602 + AT_rich Low_complexity Low_complexity 1 43 0 7 1492 566 51 13 0 chr3 118981189 118981267 -40618516 + (TCTA)n Simple_repeat Simple_repeat 2 80 0 7 1492 646 270 60 51 chr3 118981296 118981530 -40618253 - B4A SINE B4 -54 238 3 7 1492 461 115 13 0 chr3 118982170 118982248 -40617535 + (GGA)n Simple_repeat Simple_repeat 3 81 0 7 1492 2261 326 102 9 chr3 118983478 118983530 -40616253 - Lx9 LINE L1 -127 7517 7464 7 1492 246 62 0 0 chr3 118983530 118983562 -40616221 + (CA)n Simple_repeat Simple_repeat 2 33 0 7 1492 435 19 0 0 chr3 118983562 118983614 -40616169 + (TG)n Simple_repeat Simple_repeat 2 53 0 7 1492 2261 328 100 10 chr3 118983614 118984744 -40615039 - Lx9 LINE L1 -181 7463 6063 7 1492 374 403 81 0 chr3 118987070 118987219 -40612564 + RSINE1 SINE B4 5 165 0 7 1492 200 216 0 0 chr3 118988986 118989023 -40610760 + GA-rich Low_complexity Low_complexity 2 38 0 7 1492 294 361 37 31 chr3 118990320 118990483 -40609300 + RSINE1 SINE B4 2 165 0 7 1492 241 295 52 10 chr3 118990615 118990711 -40609072 - MIR SINE MIR -4 258 159 7 1492 459 357 135 10 chr3 118990730 118991033 -40608750 + MLT1A0 LTR MaLR 25 365 0 7 1492 346 313 16 16 chr3 118991288 118991473 -40608310 + L1MD LINE L1 5623 5807 -552 7 1492 249 224 12 106 chr3 118991910 118991995 -40607788 + MT2B LTR ERVL 164 240 -361 7 1492 503 248 52 22 chr3 118991919 118992055 -40607728 + B1_Mur1 SINE Alu 10 149 0 7 1492 225 224 0 17 chr3 118992107 118992166 -40607617 + T-rich Low_complexity Low_complexity 6 63 0 7 1492 26 50 0 0 chr3 118992231 118992271 -40607512 + AT_rich Low_complexity Low_complexity 1 40 0 7 1492 498 114 43 17 chr3 118992668 118992784 -40606999 + CT-rich Low_complexity Low_complexity 6 124 0 7 1492 390 21 0 0 chr3 118992801 118992848 -40606935 + (TG)n Simple_repeat Simple_repeat 2 48 0 7 1492 186 43 0 0 chr3 118992848 118992871 -40606912 + (CAGA)n Simple_repeat Simple_repeat 2 24 0 7 1492 263 355 7 22 chr3 118993311 118993449 -40606334 - MER99 DNA hAT? -381 450 315 7 1492 476 264 79 28 chr3 118993479 118993693 -40606090 - MER99 DNA hAT? -600 231 7 7 1492 378 0 0 0 chr3 118993998 118994040 -40605743 + (A)n Simple_repeat Simple_repeat 1 42 0 7 1492 227 366 158 5 chr3 118994051 118994273 -40605510 - L2 LINE L2 -469 2950 2695 7 1492 1199 261 127 3 chr3 118994449 118994818 -40604965 - MTD LTR MaLR -4 415 1 7 1492 402 311 22 0 chr3 118995144 118995279 -40604504 - Lx8 LINE L1 -741 6732 6595 7 1492 229 217 118 24 chr3 118995552 118995637 -40604146 - Charlie2a DNA MER1_type -1661 1200 1108 7 1492 45 62 0 0 chr3 118996248 118996328 -40603455 + AT_rich Low_complexity Low_complexity 1 80 0 7 1492 1693 258 8 0 chr3 118996612 118996972 -40602811 - Lx6 LINE L1 -577 6883 6521 7 1492 1086 269 92 30 chr3 118996962 118997330 -40602453 + Lx6 LINE L1 7043 7433 -27 7 1492 450 0 0 0 chr3 118997461 118997511 -40602272 + (TG)n Simple_repeat Simple_repeat 2 51 0 7 1492 1587 181 7 133 chr3 118997976 118998396 -40601387 + ORR1B2 LTR MaLR 1 367 0 7 1492 32 57 0 0 chr3 118998601 118998654 -40601129 + AT_rich Low_complexity Low_complexity 1 53 0 7 1492 737 293 15 0 chr3 118999363 118999568 -40600215 - B3 SINE B2 -5 211 4 7 1492 331 276 39 94 chr3 118999832 118999960 -40599823 - RMER4B LTR ERVK 0 585 465 7 1492 331 191 43 14 chr3 119000002 119000071 -40599712 - RMER4B LTR ERVK -172 413 343 1 1492 901 212 81 39 chr3 119000181 119000466 -40599317 - RMER4B LTR ERVK -286 299 3 1 1492 293 309 15 0 chr3 119000557 119000625 -40599158 - RSINE1 SINE B4 -13 152 84 2 1492 707 306 105 49 chr3 119000723 119001153 -40598630 - Lx8 LINE L1 -723 6750 6297 3 1492 2176 99 9 58 chr3 119001392 119001734 -40598049 - ORR1A2 LTR MaLR -2 325 1 4 1492 641 274 50 21 chr3 119001735 119002018 -40597765 + L1MC2 LINE L1 5855 6145 -199 5 1492 1166 88 0 9 chr3 119002958 119003176 -40596607 + (TTTC)n Simple_repeat Simple_repeat 1 215 0 6 1492 223 245 0 0 chr3 119004027 119004080 -40595703 + (CACCAT)n Simple_repeat Simple_repeat 5 57 0 7 1492 1132 96 0 0 chr3 119005856 119006002 -40593781 - B1_Mus1 SINE Alu -2 146 1 8 1492 1359 222 7 104 chr3 119006048 119006460 -40593323 - ORR1D1 LTR MaLR 0 374 3 9 1492 342 204 86 54 chr3 119006872 119006965 -40592818 + B3A SINE B2 5 100 -98 1 1492 21 36 0 0 chr3 119007034 119007062 -40592721 + AT_rich Low_complexity Low_complexity 1 28 0 1 1492 3757 97 2 7 chr3 119007062 119007623 -40592160 - L1_Mur1 LINE L1 -120 5766 5209 1 1492 1024 86 74 0 chr3 119007623 119007798 -40591985 + Lx3_Mus LINE L1 6814 7001 -8 1 1492 24 0 0 0 chr3 119007804 119007828 -40591955 + AT_rich Low_complexity Low_complexity 1 24 0 1 1492 207 100 0 0 chr3 119008644 119008674 -40591109 + (TTTG)n Simple_repeat Simple_repeat 3 32 0 1 1492 498 312 14 14 chr3 119008934 119009074 -40590709 - ID_B1 SINE B4 -4 220 81 1 1492 252 269 172 25 chr3 119010139 119010261 -40589522 + MER5A1 DNA MER1_type 6 145 -21 1 1492 1041 224 72 0 chr3 119010882 119011140 -40588643 - Lx3C LINE L1 -12 6964 6664 1 1492 3796 177 9 14 chr3 119011138 119011907 -40587876 - L1_Mur1 LINE L1 -142 5744 4980 1 186 7677 177 105 17 chr3 119011905 119014256 -40585527 - L1_Mur1 LINE L1 -2558 3328 767 1 1493 244 330 52 72 chr3 119015022 119015104 -40584679 + MIRc SINE MIR 19 99 -169 2 1493 2345 69 119 11 chr3 119015104 119015456 -40584327 - RLTR10 LTR ERVK 0 390 1 2 1493 244 330 52 72 chr3 119015456 119015566 -40584217 + MIRc SINE MIR 100 207 -61 2 1493 210 143 0 0 chr3 119015685 119015720 -40584063 + (CA)n Simple_repeat Simple_repeat 1 35 0 2 1493 196 30 29 29 chr3 119015720 119015754 -40584029 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 2 1493 1200 47 35 12 chr3 119015893 119016064 -40583719 + L1Md_F3 LINE L1 6410 6584 0 2 1493 1221 102 0 0 chr3 119016359 119016565 -40583218 + (GAA)n Simple_repeat Simple_repeat 1 206 0 2 1493 2479 87 20 0 chr3 119016804 119017161 -40582622 - L1_Mm LINE L1 -45 5838 5475 2 1493 670 82 0 0 chr3 119017161 119017259 -40582524 + L1_Mus2 LINE L1 6461 6558 -8 2 1493 356 136 91 0 chr3 119019608 119019674 -40580109 - HAL1-3A_ME LINE L1 -812 2046 1975 2 1493 1305 68 0 0 chr3 119019979 119020156 -40579627 + (GGGAGA)n Simple_repeat Simple_repeat 2 178 0 2 1493 1153 273 33 61 chr3 119020976 119021179 -40578604 + ORR1E LTR MaLR 2 192 -167 3 1493 1006 223 189 73 chr3 119021179 119021523 -40578260 + ORR1C2 LTR MaLR 1 384 0 3 1493 1153 273 33 61 chr3 119021523 119021682 -40578101 + ORR1E LTR MaLR 193 354 -5 3 1493 929 161 80 10 chr3 119021905 119022139 -40577644 - ORR1B2 LTR MaLR 0 367 1 3 1493 322 158 95 7 chr3 119022875 119023022 -40576761 + (TA)n Simple_repeat Simple_repeat 2 161 0 3 1493 222 107 54 0 chr3 119023059 119023115 -40576668 + (TA)n Simple_repeat Simple_repeat 1 59 0 3 1493 308 175 0 10 chr3 119023125 119023223 -40576560 + (TG)n Simple_repeat Simple_repeat 2 98 0 3 1493 22 56 0 0 chr3 119023446 119023482 -40576301 + AT_rich Low_complexity Low_complexity 1 36 0 3 1493 245 243 81 34 chr3 119024037 119024186 -40575597 - L1M5 LINE L1 -695 5484 5329 3 1493 502 339 138 15 chr3 119024295 119025103 -40574680 + L1M4 LINE L1 3995 4901 -1245 3 1493 315 0 0 0 chr3 119025133 119025168 -40574615 + (CA)n Simple_repeat Simple_repeat 1 35 0 3 1493 61 37 0 0 chr3 119025200 119025282 -40574501 + AT_rich Low_complexity Low_complexity 1 82 0 3 1493 631 195 176 21 chr3 119025353 119025522 -40574261 - B3 SINE B2 -5 211 39 4 1493 261 288 49 12 chr3 119028436 119028517 -40571266 + PB1D7 SINE Alu 36 119 -1 4 1493 445 282 65 7 chr3 119029366 119029522 -40570261 - MTEb LTR MaLR 0 379 211 4 1493 2373 64 79 6 chr3 119029898 119029961 -40569822 - L1Md_F2 LINE L1 -15 6567 6505 4 1493 183 80 0 0 chr3 119029961 119029986 -40569797 + (CCCA)n Simple_repeat Simple_repeat 1 25 0 4 1493 2373 64 79 6 chr3 119029986 119030252 -40569531 - L1Md_F2 LINE L1 -78 6504 6215 4 1493 503 231 10 2 chr3 119030584 119030703 -40569080 - B1F SINE Alu 0 120 2 4 1493 278 235 0 14 chr3 119030996 119031065 -40568718 - MIRc SINE MIR -2 266 199 4 1493 251 243 29 0 chr3 119032367 119032437 -40567346 + L1ME3A LINE L1 5447 5518 -646 4 1493 670 307 41 19 chr3 119032620 119032939 -40566844 + Lx9 LINE L1 7171 7496 -148 4 1493 308 256 107 41 chr3 119032995 119033117 -40566666 + L1ME3A LINE L1 5879 6008 -165 4 1493 21 57 0 0 chr3 119033303 119033338 -40566445 + AT_rich Low_complexity Low_complexity 1 35 0 4 1493 582 15 0 0 chr3 119037337 119037404 -40562379 + (TC)n Simple_repeat Simple_repeat 2 68 0 5 1493 303 85 0 0 chr3 119037404 119037450 -40562333 + (TG)n Simple_repeat Simple_repeat 2 48 0 5 1493 263 112 68 17 chr3 119037490 119037612 -40562171 + (TCTG)n Simple_repeat Simple_repeat 1 128 0 5 1493 741 168 0 0 chr3 119037613 119037792 -40561991 + CT-rich Low_complexity Low_complexity 2 180 0 5 1493 369 0 0 0 chr3 119037816 119037857 -40561926 + (CA)n Simple_repeat Simple_repeat 1 41 0 5 1493 280 308 17 0 chr3 119039089 119039206 -40560577 + MamRep434 DNA TcMar 105 223 -203 5 1493 234 333 0 0 chr3 119039266 119039338 -40560445 + MamRep434 DNA TcMar 355 426 0 5 1493 697 286 78 68 chr3 119039788 119040132 -40559651 - MTD LTR MaLR -15 404 1 5 1493 798 247 21 0 chr3 119040191 119040377 -40559406 + B3A SINE B2 1 190 -8 5 1493 552 309 128 35 chr3 119040924 119041212 -40558571 + MLT1A1 LTR MaLR 8 322 -86 5 1493 2658 241 59 107 chr3 119042616 119042733 -40557050 - RMER1A Other Other -3 1027 873 5 1493 261 0 0 0 chr3 119042733 119042762 -40557021 + (CA)n Simple_repeat Simple_repeat 2 30 0 6 1493 2658 259 57 100 chr3 119042762 119044181 -40555602 - RMER1A Other Other -158 872 7 5 1493 288 0 0 0 chr3 119045061 119045093 -40554690 + (TG)n Simple_repeat Simple_repeat 2 33 0 6 1493 646 325 54 12 chr3 119045305 119045545 -40554238 - B4 SINE B4 -11 281 32 6 1493 226 253 43 11 chr3 119045719 119045811 -40553972 - L1MEf LINE L1 -4987 1213 1119 6 1493 1342 105 14 5 chr3 119047053 119047264 -40552519 - L1Md_F2 LINE L1 0 6582 6370 6 1493 194 81 0 26 chr3 119047302 119047340 -40552443 + (TTTTTA)n Simple_repeat Simple_repeat 1 37 0 6 1493 4532 192 31 51 chr3 119047347 119048457 -40551326 - Lx2B LINE L1 -23 6977 5891 6 1493 423 100 0 81 chr3 119048459 119048546 -40551237 + Lx2B LINE L1 5813 5892 -1108 6 1493 735 276 24 6 chr3 119048562 119048726 -40551057 - B3A SINE B2 -30 168 2 6 1493 290 277 70 60 chr3 119050222 119050275 -40549508 + MER5A1 DNA MER1_type 33 92 -74 6 1493 2075 179 25 3 chr3 119050275 119050634 -40549149 + ORR1B2 LTR MaLR 1 367 0 6 1493 290 277 70 60 chr3 119050634 119050680 -40549103 + MER5A1 DNA MER1_type 93 133 -33 6 1493 901 140 96 34 chr3 119051381 119051558 -40548225 + B2_Mm2 SINE B2 2 189 -6 7 1493 180 111 0 0 chr3 119053013 119053040 -40546743 + (TTTG)n Simple_repeat Simple_repeat 3 29 0 7 1493 1302 215 111 8 chr3 119053077 119053456 -40546327 - MTD LTR MaLR -1 418 1 7 1493 306 336 27 3 chr3 119054032 119054138 -40545645 - PB1D10 SINE Alu -5 115 1 7 1493 243 0 0 0 chr3 119054204 119054231 -40545552 + (TTCA)n Simple_repeat Simple_repeat 1 27 0 7 1493 1019 269 46 43 chr3 119054351 119054700 -40545083 + MTEb LTR MaLR 3 352 -27 7 1493 21 0 0 0 chr3 119055055 119055076 -40544707 + AT_rich Low_complexity Low_complexity 1 21 0 7 1493 385 343 0 0 chr3 119055159 119055261 -40544522 + MER45R DNA Tip100 9 110 -1471 7 1493 249 33 0 0 chr3 119055263 119055293 -40544490 + (TG)n Simple_repeat Simple_repeat 2 31 0 7 1493 302 283 13 2 chr3 119055329 119055426 -40544357 + MER45A DNA Tip100 102 177 -1 7 1493 593 298 72 11 chr3 119055903 119056083 -40543700 - B3A SINE B2 0 198 8 7 1493 34734 32 2 7 chr3 119057782 119062962 -40536821 + L1Md_T LINE L1 440 5586 -297 8 1493 8372 38 0 0 chr3 119062962 119063958 -40535825 + L1Md_T LINE L1 5587 6582 0 8 1493 192 125 0 0 chr3 119065520 119065552 -40534231 + (CCA)n Simple_repeat Simple_repeat 2 33 0 8 1493 25 31 0 0 chr3 119067160 119067192 -40532591 + AT_rich Low_complexity Low_complexity 1 32 0 8 1493 422 299 31 0 chr3 119067196 119067293 -40532490 - RSINE1 SINE B4 -7 158 59 8 1493 2116 167 11 0 chr3 119067324 119067678 -40532105 - Lx2 LINE L1 -2 6995 6638 8 1493 253 289 174 6 chr3 119069520 119069687 -40530096 - L2a LINE L2 -273 3153 2959 8 1493 423 313 117 64 chr3 119070610 119070876 -40528907 + B4A SINE B4 2 281 -11 8 1493 567 0 0 0 chr3 119071692 119071755 -40528028 + (GA)n Simple_repeat Simple_repeat 1 63 0 8 1493 192 294 0 0 chr3 119073168 119073219 -40526564 + MIR SINE MIR 136 186 -76 8 1493 30 0 0 0 chr3 119073868 119073898 -40525885 + AT_rich Low_complexity Low_complexity 1 30 0 8 1493 193 385 52 7 chr3 119074878 119075014 -40524769 - MIR SINE MIR -108 154 13 9 1493 6719 93 45 3 chr3 119075308 119076338 -40523445 - L1_Mm LINE L1 -336 5547 4475 9 1493 222 197 15 29 chr3 119076572 119076640 -40523143 + (TGG)n Simple_repeat Simple_repeat 1 67 0 9 1493 770 326 43 22 chr3 119076773 119077049 -40522734 - B4A SINE B4 -2 290 9 9 1493 3563 220 57 84 chr3 119079576 119080449 -40519334 - RMER13A LTR ERVK -10 850 1 9 1493 217 291 25 0 chr3 119080790 119080869 -40518914 + (CA)n Simple_repeat Simple_repeat 2 82 0 9 1493 1055 66 0 49 chr3 119080925 119081069 -40518714 + B1_Mm SINE Alu 2 138 -9 9 1493 299 33 48 32 chr3 119081069 119081131 -40518652 + (CAAA)n Simple_repeat Simple_repeat 2 64 0 9 1493 21 0 0 0 chr3 119082868 119082889 -40516894 + AT_rich Low_complexity Low_complexity 1 21 0 9 1493 306 0 0 0 chr3 119083184 119083218 -40516565 + (A)n Simple_repeat Simple_repeat 1 34 0 9 1493 22 0 0 0 chr3 119083287 119083309 -40516474 + AT_rich Low_complexity Low_complexity 1 22 0 1 1493 927 335 24 14 chr3 119083354 119083642 -40516141 + B4A SINE B4 1 291 -1 1 1493 353 341 0 11 chr3 119084175 119084267 -40515516 - B1F SINE Alu -58 91 1 1 1493 643 181 58 0 chr3 119085016 119085154 -40514629 - URR1A DNA MER1_type -2 224 79 1 1493 197 152 87 0 chr3 119086045 119086091 -40513692 - L2 LINE L2 -946 2473 2424 1 1493 351 0 0 0 chr3 119086140 119086179 -40513604 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 1493 1128 144 0 0 chr3 119086597 119087085 -40512698 + (TG)n Simple_repeat Simple_repeat 1 488 0 1 1493 1129 51 0 0 chr3 119088516 119088654 -40511129 - B1_Mus2 SINE Alu 0 147 10 1 1493 357 208 138 100 chr3 119088543 119088703 -40511080 - MT2B2 LTR ERVL -306 278 113 1 1493 271 281 0 109 chr3 119088705 119088797 -40510986 - ORR1D2 LTR MaLR -288 82 1 1 1493 911 327 11 21 chr3 119089178 119089465 -40510318 + B4 SINE B4 5 288 -4 1 1493 208 284 15 0 chr3 119089469 119089536 -40510247 + (CA)n Simple_repeat Simple_repeat 1 68 0 1 1493 318 87 0 0 chr3 119090089 119090135 -40509648 + (A)n Simple_repeat Simple_repeat 1 46 0 1 1493 340 250 71 0 chr3 119092783 119092867 -40506916 + B1F SINE Alu 20 109 -40 1 1493 235 237 58 97 chr3 119093220 119093323 -40506460 - Tigger10 DNA Tigger -933 910 812 1 1493 22 103 0 0 chr3 119094819 119094897 -40504886 + AT_rich Low_complexity Low_complexity 1 78 0 1 1493 2393 50 3 3 chr3 119095020 119095321 -40504462 + L1Md_F2 LINE L1 6282 6582 0 1 1493 251 304 0 0 chr3 119096286 119096355 -40503428 - PB1D9 SINE Alu -8 112 44 1 1493 217 51 0 49 chr3 119096438 119096479 -40503304 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 1 1493 26 50 0 0 chr3 119096782 119096822 -40502961 + AT_rich Low_complexity Low_complexity 1 40 0 1 1493 4197 44 6 2 chr3 119096822 119097325 -40502458 - L1Md_F2 LINE L1 -16 6566 6062 1 1493 7175 152 44 2 chr3 119097603 119098826 -40500957 - Lx4A LINE L1 -2 7056 5783 1 1493 1234 119 0 44 chr3 119098852 119099055 -40500728 - B2_Mm2 SINE B2 -1 194 1 1 1493 658 111 81 0 chr3 119099055 119099193 -40500590 - Lx4A LINE L1 -337 5825 5674 1 1493 211 304 97 20 chr3 119100988 119101124 -40498659 - MIRc SINE MIR -110 158 8 1 1493 240 217 14 28 chr3 119101251 119101322 -40498461 + (TA)n Simple_repeat Simple_repeat 2 71 0 1 1493 186 209 0 0 chr3 119101555 119101598 -40498185 + (CATA)n Simple_repeat Simple_repeat 2 44 0 1 1493 230 214 0 54 chr3 119101598 119101672 -40498111 + (TTATA)n Simple_repeat Simple_repeat 5 74 0 1 1493 767 236 70 6 chr3 119102797 119102969 -40496814 + B3 SINE B2 3 184 -32 1 1493 279 0 0 0 chr3 119102969 119103000 -40496783 + (CAA)n Simple_repeat Simple_repeat 3 33 0 1 1493 478 299 10 55 chr3 119103000 119103029 -40496754 + B2_Mm2 SINE B2 166 194 -1 1 1493 919 268 21 127 chr3 119103277 119103701 -40496082 - MTE2a LTR MaLR 0 379 1 1 1493 841 155 5 5 chr3 119105380 119105588 -40494195 + (TA)n Simple_repeat Simple_repeat 1 208 0 1 1493 400 288 46 66 chr3 119105827 119106024 -40493759 - MIR3 SINE MIR -13 195 3 1 1493 187 338 39 13 chr3 119106443 119106521 -40493262 + MIRc SINE MIR 48 127 -141 1 1493 762 308 58 4 chr3 119106638 119106912 -40492871 - MLT2B2 LTR ERVL -222 293 5 1 1493 485 305 62 0 chr3 119107288 119107416 -40492367 - B1F2 SINE Alu -1 148 13 1 1493 267 363 69 23 chr3 119107686 119107861 -40491922 - LTR85b LTR Gypsy? -131 653 471 1 1493 293 148 12 0 chr3 119109214 119109295 -40490488 + (TATATG)n Simple_repeat Simple_repeat 3 84 0 1 1493 371 122 60 15 chr3 119109779 119109912 -40489871 + (TA)n Simple_repeat Simple_repeat 2 140 0 1 1493 576 0 0 0 chr3 119110827 119110891 -40488892 + (TC)n Simple_repeat Simple_repeat 1 64 0 1 1493 609 312 72 27 chr3 119111430 119111651 -40488132 + B4 SINE B4 50 280 -12 1 1493 423 0 0 0 chr3 119111672 119111719 -40488064 + (TC)n Simple_repeat Simple_repeat 1 47 0 1 1493 573 55 0 0 chr3 119111719 119111791 -40487992 + (CA)n Simple_repeat Simple_repeat 1 73 0 1 1493 680 336 81 29 chr3 119111861 119112134 -40487649 - B4A SINE B4 0 292 6 1 1493 291 104 0 0 chr3 119112738 119112786 -40486997 + (TG)n Simple_repeat Simple_repeat 2 49 0 1 1493 603 331 6 24 chr3 119112787 119112957 -40486826 - B3A SINE B2 -31 167 1 1 1493 1064 85 7 0 chr3 119116028 119116181 -40483602 + (TC)n Simple_repeat Simple_repeat 1 154 0 1 1493 501 47 0 0 chr3 119116194 119116258 -40483525 + (TG)n Simple_repeat Simple_repeat 1 64 0 1 1493 230 241 0 17 chr3 119116403 119116462 -40483321 + GA-rich Low_complexity Low_complexity 2 59 0 1 1493 282 228 0 37 chr3 119116530 119116612 -40483171 - MLT1A LTR MaLR 0 408 330 1 1493 366 312 48 48 chr3 119116666 119116831 -40482952 - MLT1A LTR MaLR -206 168 4 1 1493 21 0 0 0 chr3 119116881 119116902 -40482881 + AT_rich Low_complexity Low_complexity 1 21 0 1 1493 498 108 0 0 chr3 119117435 119117509 -40482274 + (GA)n Simple_repeat Simple_repeat 1 74 0 1 1493 258 304 11 0 chr3 119117650 119117742 -40482041 + Ricksha_c DNA MuDR 368 460 -1588 1 1493 193 340 89 102 chr3 119118360 119118596 -40481187 - L2a LINE L2 -257 3169 2937 1 1493 393 109 0 0 chr3 119118666 119118730 -40481053 + (TG)n Simple_repeat Simple_repeat 1 64 0 1 1493 224 402 8 54 chr3 119119735 119119864 -40479919 - L2c LINE L2 -173 3214 3092 1 1493 613 298 28 28 chr3 119119873 119120087 -40479696 - MIR SINE MIR 0 262 49 1 1493 269 341 0 21 chr3 119120437 119120530 -40479253 - B4A SINE B4 -81 211 121 1 1493 573 328 42 26 chr3 119120694 119120885 -40478898 - B3A SINE B2 -15 201 8 1 1493 2380 27 10 13 chr3 119120906 119121209 -40478574 - L1Md_F3 LINE L1 0 6584 6283 1 1493 2249 26 0 0 chr3 119121209 119121480 -40478303 + L1Md_F3 LINE L1 6017 6287 -297 1 1493 315 0 0 0 chr3 119121994 119122029 -40477754 + (GA)n Simple_repeat Simple_repeat 2 36 0 1 1493 529 259 59 51 chr3 119122133 119122369 -40477414 + L3 LINE CR1 737 974 -3515 1 1493 204 348 49 33 chr3 119122990 119123112 -40476671 + L3 LINE CR1 2067 2190 -2299 1 1493 468 0 0 0 chr3 119123224 119123276 -40476507 + (TG)n Simple_repeat Simple_repeat 1 52 0 1 1493 821 251 87 24 chr3 119123372 119123580 -40476203 + MTE2b LTR MaLR 2 222 -157 1 1493 1793 123 40 61 chr3 119123581 119123909 -40475874 - ORR1A4 LTR MaLR -8 321 1 1 1493 563 281 7 0 chr3 119123910 119124049 -40475734 + MTE2b LTR MaLR 216 355 -24 1 1493 228 311 82 64 chr3 119124250 119124470 -40475313 + L3 LINE CR1 2669 2892 -1597 1 1493 468 0 0 0 chr3 119124621 119124673 -40475110 + (TG)n Simple_repeat Simple_repeat 2 53 0 1 1493 454 304 0 135 chr3 119125036 119125192 -40474591 + B1F SINE Alu 7 141 -8 1 1493 245 300 86 0 chr3 119125383 119125453 -40474330 + L3 LINE CR1 3232 3307 -1182 1 1493 249 336 129 33 chr3 119125515 119125755 -40474028 + L3 LINE CR1 3446 3708 -781 1 1493 516 300 29 23 chr3 119125983 119126157 -40473626 + B4A SINE B4 5 179 -113 1 1493 279 122 0 0 chr3 119126230 119126279 -40473504 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 1493 210 320 0 40 chr3 119127597 119127698 -40472085 + GA-rich Low_complexity Low_complexity 4 100 0 1 1493 438 256 0 15 chr3 119128320 119128455 -40471328 - HAL1-2a_MD LINE L1 -512 2512 2380 1 1493 1201 252 96 13 chr3 119128455 119128792 -40470991 - MTD LTR MaLR -17 402 1 1 1493 225 102 16 33 chr3 119129267 119129328 -40470455 + A-rich Low_complexity Low_complexity 5 64 0 1 1493 469 88 25 0 chr3 119129557 119129637 -40470146 + (TG)n Simple_repeat Simple_repeat 1 82 0 1 1493 429 185 24 24 chr3 119129756 119129839 -40469944 - B4A SINE B4 -207 85 3 1 1493 429 360 41 46 chr3 119130357 119130552 -40469231 - B3A SINE B2 0 198 5 1 1493 770 257 36 63 chr3 119130577 119130830 -40468953 + MTEa LTR MaLR 132 377 -2 1 1493 24 0 0 0 chr3 119131573 119131597 -40468186 + AT_rich Low_complexity Low_complexity 1 24 0 1 1493 439 304 86 46 chr3 119131721 119131873 -40467910 - RSINE1 SINE B4 0 165 8 1 1493 586 222 14 56 chr3 119131910 119132053 -40467730 + B1_Mur1 SINE Alu 2 138 -11 1 1493 531 0 0 0 chr3 119132054 119132113 -40467670 + (TA)n Simple_repeat Simple_repeat 1 59 0 1 1493 387 0 0 0 chr3 119132113 119132155 -40467628 + (GA)n Simple_repeat Simple_repeat 2 44 0 1 1493 425 304 0 49 chr3 119132776 119132918 -40466865 + MTEa LTR MaLR 1 135 -244 1 1493 349 225 17 0 chr3 119133209 119133329 -40466454 + GA-rich Low_complexity Low_complexity 4 125 0 1 1493 1083 252 27 75 chr3 119133641 119133933 -40465850 + B4 SINE B4 9 286 -6 1 1493 249 33 0 0 chr3 119133985 119134015 -40465768 + (CA)n Simple_repeat Simple_repeat 2 31 0 1 1493 729 38 29 0 chr3 119136258 119136363 -40463420 + (TAGA)n Simple_repeat Simple_repeat 4 111 0 1 1493 695 304 13 74 chr3 119136428 119136737 -40463046 - B4A SINE B4 -2 290 1 1 1493 555 292 141 90 chr3 119137305 119137681 -40462102 + MLT2D LTR ERVL 1 395 -19 1 1493 976 317 16 25 chr3 119137987 119138301 -40461482 - MLT1A0 LTR MaLR -12 353 43 1 1493 522 31 0 0 chr3 119138305 119138369 -40461414 + (TG)n Simple_repeat Simple_repeat 2 65 0 1 1493 274 253 35 24 chr3 119139618 119139703 -40460080 - MTEa LTR MaLR -22 357 272 1 1493 2500 44 0 16 chr3 119139864 119140186 -40459597 - L1Md_F3 LINE L1 0 6584 6268 1 1493 1365 249 117 6 chr3 119140781 119141140 -40458643 + MTD LTR MaLR 6 404 -15 1 1493 279 172 14 86 chr3 119141237 119141307 -40458476 - MLT1K LTR MaLR -7 588 524 1 1493 1399 269 68 15 chr3 119141395 119141791 -40457992 + MTD LTR MaLR 1 417 -2 1 1493 235 296 47 47 chr3 119141914 119141999 -40457784 + MLT1D LTR MaLR 131 215 -290 1 1493 235 216 66 26 chr3 119142171 119142247 -40457536 + MLT1D LTR MaLR 288 366 -8 1 1493 266 322 77 94 chr3 119142399 119142697 -40457086 + ORR1E LTR MaLR 64 356 -3 1 1493 398 435 20 3 chr3 119143139 119143432 -40456351 - L1ME3B LINE L1 -348 5892 5595 1 1493 718 279 100 40 chr3 119143797 119144126 -40455657 + MLT1A0 LTR MaLR 12 360 -5 1 1494 5315 38 5 0 chr3 119145030 119145661 -40454122 + L1Md_F2 LINE L1 5937 6570 -12 1 1494 228 313 30 0 chr3 119145860 119145927 -40453856 + MIR SINE MIR 7 75 -187 2 1494 297 358 31 26 chr3 119145951 119146146 -40453637 - MIR SINE MIR -25 237 42 2 1494 285 300 11 29 chr3 119146185 119146287 -40453496 + MIRb SINE MIR 167 262 0 2 1494 229 339 33 8 chr3 119146605 119146727 -40453056 + MIR SINE MIR 15 139 -123 2 1494 651 26 0 0 chr3 119147006 119147083 -40452700 + (TTCC)n Simple_repeat Simple_repeat 1 77 0 2 1494 495 0 0 0 chr3 119147084 119147139 -40452644 + (TC)n Simple_repeat Simple_repeat 2 56 0 2 1494 687 83 0 0 chr3 119147218 119147326 -40452457 + (TG)n Simple_repeat Simple_repeat 2 109 0 2 1494 3773 95 24 17 chr3 119147504 119148081 -40451702 - Lx LINE L1 -1 6653 6073 2 1494 2371 174 13 24 chr3 119148094 119148552 -40451231 - Lx LINE L1 -13 6641 6189 2 1494 1390 274 69 38 chr3 119148984 119149651 -40450132 - L1MB8 LINE L1 -155 6023 5336 2 1494 977 259 75 126 chr3 119149661 119150059 -40449724 + MTE2a LTR MaLR 1 378 -1 2 1494 387 0 0 0 chr3 119150144 119150187 -40449596 + (CA)n Simple_repeat Simple_repeat 2 44 0 2 1494 586 256 3 58 chr3 119151149 119151318 -40448465 - B3A SINE B2 -38 178 28 2 1494 238 259 22 11 chr3 119152166 119152256 -40447527 + (TAA)n Simple_repeat Simple_repeat 2 92 0 2 1494 198 0 0 0 chr3 119152439 119152461 -40447322 + (G)n Simple_repeat Simple_repeat 1 22 0 2 1494 494 200 41 8 chr3 119152805 119152926 -40446857 + L1_Mur3 LINE L1 931 1055 -6657 2 1494 7815 101 5 6 chr3 119153108 119155166 -40444617 + L1_Mus3 LINE L1 4602 6638 0 2 1494 201 69 0 0 chr3 119155707 119155717 -40444066 + (CA)n Simple_repeat Simple_repeat 1 10 0 2 1494 861 10 0 0 chr3 119155717 119155815 -40443968 + (TC)n Simple_repeat Simple_repeat 1 98 0 2 1494 201 69 0 0 chr3 119155815 119155833 -40443950 + (CA)n Simple_repeat Simple_repeat 1 18 0 2 1494 3191 55 12 17 chr3 119156052 119156461 -40443322 - MTB_Mm LTR MaLR 0 407 1 2 1494 2979 145 62 27 chr3 119156464 119157185 -40442598 - MTB_Mm-int LTR MaLR -3 1095 1 2 1494 211 338 56 0 chr3 119157800 119157871 -40441912 + L2a LINE L2 3352 3426 0 2 1494 547 346 76 29 chr3 119158206 119158444 -40441339 + B4A SINE B4 2 250 -42 2 1494 414 0 0 0 chr3 119158628 119158674 -40441109 + (TG)n Simple_repeat Simple_repeat 2 47 0 2 1494 549 284 155 21 chr3 119158990 119159274 -40440509 + MLT1A0 LTR MaLR 18 339 -26 2 1494 22 0 0 0 chr3 119159688 119159710 -40440073 + AT_rich Low_complexity Low_complexity 1 22 0 2 1494 239 93 23 0 chr3 119159761 119159804 -40439979 + (CAAGG)n Simple_repeat Simple_repeat 1 44 0 2 1494 303 336 16 8 chr3 119160293 119160422 -40439361 + L1ME1 LINE L1 5621 5750 -429 2 1494 1519 194 50 22 chr3 119160522 119160844 -40438939 + RLTR25B LTR ERVK 106 436 -592 2 1494 11550 74 6 1 chr3 119160906 119162536 -40437247 - L1Md_F2 LINE L1 -1246 4637 3000 2 1494 6318 62 9 5 chr3 119162534 119163408 -40436375 + L1Md_F2 LINE L1 4709 5586 -297 2 1494 7475 60 25 2 chr3 119163408 119164381 -40435402 + L1Md_F2 LINE L1 5587 6581 -1 2 1494 333 185 0 0 chr3 119164398 119164463 -40435320 + A-rich Low_complexity Low_complexity 1 65 0 2 1494 1724 186 28 0 chr3 119164491 119164809 -40434974 + RLTR25B LTR ERVK 449 775 -253 2 1494 555 228 47 47 chr3 119165042 119165212 -40434571 + RLTR25B LTR ERVK 859 1028 0 2 1494 269 191 32 43 chr3 119165241 119165334 -40434449 + L1ME1 LINE L1 5843 5934 -245 2 1494 393 293 48 24 chr3 119165963 119166131 -40433652 - L2 LINE L2 -453 2966 2795 2 1494 650 303 34 9 chr3 119166141 119166374 -40433409 + B4A SINE B4 8 246 -46 2 1494 912 135 0 0 chr3 119166375 119166523 -40433260 + (GGGA)n Simple_repeat Simple_repeat 4 151 0 2 1494 231 261 0 14 chr3 119166606 119166676 -40433107 + (CA)n Simple_repeat Simple_repeat 2 70 0 2 1494 639 84 0 0 chr3 119166689 119166784 -40432999 + (CA)n Simple_repeat Simple_repeat 2 96 0 2 1494 287 290 68 55 chr3 119168445 119168591 -40431192 - MIRb SINE MIR -30 238 91 2 1494 323 276 45 17 chr3 119169035 119169212 -40430571 - L1MB8 LINE L1 -5 6173 5992 2 1494 906 10 0 0 chr3 119169223 119169326 -40430457 + (TTC)n Simple_repeat Simple_repeat 2 104 0 2 1494 265 218 22 44 chr3 119169326 119169409 -40430374 - L1MB8 LINE L1 -785 5395 5313 2 1494 1589 116 0 31 chr3 119169469 119169727 -40430056 - L1Md_F2 LINE L1 0 6582 6333 2 1494 621 40 0 0 chr3 119171138 119171214 -40428569 + (GGGA)n Simple_repeat Simple_repeat 1 76 0 2 1494 566 279 12 42 chr3 119171423 119171588 -40428195 + RSINE1 SINE B4 6 165 0 2 1494 321 26 0 0 chr3 119171602 119171640 -40428143 + (TAA)n Simple_repeat Simple_repeat 1 38 0 2 1494 349 247 20 10 chr3 119171920 119172018 -40427765 + L3b LINE CR1 140 238 -244 2 1494 382 114 0 28 chr3 119173158 119173230 -40426553 + (AGGGGG)n Simple_repeat Simple_repeat 2 71 0 2 1494 266 269 28 73 chr3 119173690 119173979 -40425804 - RMER17D LTR ERVK -333 556 281 2 1494 227 106 43 0 chr3 119174001 119174048 -40425735 + (CAGA)n Simple_repeat Simple_repeat 2 50 0 2 1494 252 0 0 0 chr3 119174913 119174941 -40424842 + (TG)n Simple_repeat Simple_repeat 2 29 0 2 1494 587 327 111 66 chr3 119174964 119175341 -40424442 + MLT1C LTR MaLR 57 450 -17 2 1494 228 244 108 32 chr3 119175361 119175454 -40424329 - MIRc SINE MIR -106 162 63 2 1494 627 298 45 10 chr3 119175653 119175853 -40423930 + B3 SINE B2 5 211 -5 2 1494 425 297 137 27 chr3 119175963 119176245 -40423538 + MTE2b LTR MaLR 5 342 -37 2 1494 376 332 198 18 chr3 119176600 119176928 -40422855 + MER110A LTR ERV1 81 467 -1 2 1494 314 192 0 9 chr3 119177431 119177499 -40422284 + B1F2 SINE Alu 2 67 -82 2 1494 3159 228 12 28 chr3 119177746 119178603 -40421180 + L1_Mur3 LINE L1 4896 5738 -142 2 1494 1350 259 9 41 chr3 119179085 119179423 -40420360 + MTD LTR MaLR 1 327 -92 2 1494 893 250 5 19 chr3 119179716 119179932 -40419851 - ID_B1 SINE B4 -8 216 4 2 1494 678 106 40 23 chr3 119181420 119181594 -40418189 + (TAGA)n Simple_repeat Simple_repeat 4 180 0 2 1494 252 317 0 99 chr3 119182017 119182108 -40417675 + MTE2a LTR MaLR 1 82 -297 2 1494 654 199 147 0 chr3 119182101 119182237 -40417546 + MTE2a LTR MaLR 224 379 0 2 1494 446 343 65 69 chr3 119182252 119182499 -40417284 - B4A SINE B4 0 292 47 2 1494 2253 154 62 17 chr3 119182500 119182902 -40416881 + MTC LTR MaLR 1 420 -1 2 1494 1163 264 56 67 chr3 119183127 119183485 -40416298 - ORR1E LTR MaLR -2 357 4 2 1494 967 254 0 0 chr3 119184034 119184215 -40415568 - B3 SINE B2 -10 206 26 2 1494 384 200 0 0 chr3 119184377 119184462 -40415321 + CT-rich Low_complexity Low_complexity 2 86 0 2 1494 496 298 74 5 chr3 119184462 119184651 -40415132 - Lx8 LINE L1 -93 7380 7179 2 1494 4933 109 4 0 chr3 119184830 119185580 -40414203 + L1_Mur2 LINE L1 3865 4617 -1260 2 1494 468 275 38 11 chr3 119185573 119185757 -40414026 - L1M2 LINE L1 -530 5782 5594 2 1494 848 82 8 0 chr3 119186024 119186146 -40413637 + (TTTC)n Simple_repeat Simple_repeat 2 124 0 2 1494 3358 10 0 0 chr3 119186146 119186559 -40413224 + L1_Mm LINE L1 2911 3323 -2560 2 1494 270 176 0 0 chr3 119186559 119186610 -40413173 + T-rich Low_complexity Low_complexity 1 51 0 2 1494 761 114 187 0 chr3 119186610 119186733 -40413050 - B1_Mur4 SINE Alu 0 150 5 2 1494 757 288 42 42 chr3 119186753 119187177 -40412606 - L1MA4 LINE L1 -458 5842 5419 2 1494 273 250 201 0 chr3 119187161 119187325 -40412458 - L1M2 LINE L1 -687 5613 5417 2 1494 2529 240 53 9 chr3 119187328 119187989 -40411794 - Lx6 LINE L1 -27 7433 6744 2 1494 257 270 0 51 chr3 119188218 119188335 -40411448 - L1MCa LINE L1 -4915 1836 1726 2 1494 207 0 0 0 chr3 119188458 119188481 -40411302 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 2 1494 364 322 66 102 chr3 119188485 119188618 -40411165 - L1MCa LINE L1 -5109 1642 1504 2 1494 189 0 0 0 chr3 119188618 119188639 -40411144 + (TTC)n Simple_repeat Simple_repeat 3 23 0 2 1494 364 322 66 102 chr3 119188639 119188868 -40410915 - L1MCa LINE L1 -5248 1503 1293 2 1494 330 242 60 10 chr3 119188967 119189067 -40410716 - L1MCa LINE L1 -4970 1075 971 2 1494 205 45 21 83 chr3 119189072 119189120 -40410663 + (TTTG)n Simple_repeat Simple_repeat 4 48 0 2 1494 558 273 0 36 chr3 119189148 119189285 -40410498 + Lx8 LINE L1 7097 7228 -245 2 1494 353 324 97 94 chr3 119189286 119189616 -40410167 - L1MCa LINE L1 -5703 1048 718 2 1494 369 345 106 13 chr3 119189678 119190066 -40409717 - L1MCa LINE L1 -6083 668 245 2 1494 1783 203 26 40 chr3 119190125 119190504 -40409279 - ORR1D1 LTR MaLR 0 374 1 2 1494 1142 230 222 45 chr3 119190627 119191093 -40408690 + MT2B LTR ERVL 1 549 -52 2 1494 476 68 14 0 chr3 119191093 119191166 -40408617 + (TAGA)n Simple_repeat Simple_repeat 4 77 0 2 1494 1142 230 222 45 chr3 119191166 119191208 -40408575 + MT2B LTR ERVL 550 598 -3 2 1494 501 71 0 0 chr3 119191661 119191731 -40408052 + (GA)n Simple_repeat Simple_repeat 1 70 0 2 1494 299 311 17 8 chr3 119191746 119191866 -40407917 + GA-rich Low_complexity Low_complexity 5 125 0 2 1494 301 329 0 0 chr3 119191789 119191865 -40407918 + G-rich Low_complexity Low_complexity 5 80 0 2 1494 189 121 0 0 chr3 119192067 119192100 -40407683 + (CAAAA)n Simple_repeat Simple_repeat 2 34 0 2 1494 615 272 84 154 chr3 119192711 119192935 -40406848 + MLT1B LTR MaLR 23 212 -178 2 1494 234 0 0 0 chr3 119192935 119192961 -40406822 + (CA)n Simple_repeat Simple_repeat 1 26 0 2 1494 981 136 0 0 chr3 119192961 119193137 -40406646 + (GA)n Simple_repeat Simple_repeat 2 178 0 2 1494 615 272 84 154 chr3 119193137 119193293 -40406490 + MLT1B LTR MaLR 213 376 -14 2 1494 586 330 97 43 chr3 119193872 119194367 -40405416 - MT2A LTR ERVL -12 542 1 2 1494 351 308 146 20 chr3 119194441 119194640 -40405143 - MIRb SINE MIR -40 228 5 2 1494 504 318 97 55 chr3 119195636 119195926 -40403857 + RMER15 LTR ERVL 258 559 -16 2 1494 183 42 0 0 chr3 119195934 119195958 -40403825 + (CAAAAA)n Simple_repeat Simple_repeat 3 26 0 2 1494 724 286 5 10 chr3 119196009 119196210 -40403573 + B3 SINE B2 2 201 -15 2 1494 293 136 15 0 chr3 119196214 119196280 -40403503 + (CATA)n Simple_repeat Simple_repeat 2 68 0 2 1494 24 0 0 0 chr3 119196289 119196313 -40403470 + AT_rich Low_complexity Low_complexity 1 24 0 2 1494 650 55 11 0 chr3 119196397 119196488 -40403295 + (GAAA)n Simple_repeat Simple_repeat 2 93 0 2 1494 436 0 16 33 chr3 119196505 119196566 -40403217 + (TAAA)n Simple_repeat Simple_repeat 1 60 0 2 1494 432 303 98 0 chr3 119196578 119196710 -40403073 + RSINE1 SINE B4 2 146 -19 2 1494 214 297 0 26 chr3 119197515 119197591 -40402192 + GA-rich Low_complexity Low_complexity 3 76 0 2 1494 408 88 0 0 chr3 119198250 119198307 -40401476 + (GA)n Simple_repeat Simple_repeat 1 57 0 2 1494 454 213 123 62 chr3 119198604 119198734 -40401049 + B1_Mur4 SINE Alu 12 149 -1 2 1494 246 32 0 0 chr3 119199907 119199938 -40399845 + (ATTG)n Simple_repeat Simple_repeat 2 32 0 2 1494 212 131 28 28 chr3 119200406 119200477 -40399306 + A-rich Low_complexity Low_complexity 5 75 0 3 1494 270 0 0 0 chr3 119200598 119200628 -40399155 + (TGAA)n Simple_repeat Simple_repeat 4 33 0 3 1494 226 291 43 85 chr3 119200648 119200742 -40399041 - ORR1B2 LTR MaLR -172 195 106 3 1494 483 226 96 13 chr3 119202257 119202414 -40397369 - L1MA6 LINE L1 -27 6273 6104 3 1494 306 290 10 31 chr3 119202687 119202763 -40397020 + B4 SINE B4 11 84 -208 3 1494 718 292 0 23 chr3 119202763 119202935 -40396848 + B3A SINE B2 1 168 -30 3 1494 309 270 0 0 chr3 119203485 119203548 -40396235 + tRNA-Ala-GCY_ tRNA tRNA 4 66 -9 3 1494 493 307 26 13 chr3 119203871 119204026 -40395757 - MIRb SINE MIR -65 203 47 3 1494 26 0 0 0 chr3 119204629 119204655 -40395128 + AT_rich Low_complexity Low_complexity 1 26 0 3 1494 906 221 24 19 chr3 119204658 119204870 -40394913 + B3 SINE B2 1 213 -3 3 1494 271 265 208 48 chr3 119204898 119205125 -40394658 + B4 SINE B4 3 276 -16 3 1494 186 71 0 0 chr3 119205125 119205153 -40394630 + (TG)n Simple_repeat Simple_repeat 1 28 0 3 1494 271 265 208 48 chr3 119205153 119205175 -40394608 + B4 SINE B4 277 292 0 3 1494 957 18 0 0 chr3 119205392 119205503 -40394280 + (CA)n Simple_repeat Simple_repeat 1 111 0 3 1494 498 289 16 67 chr3 119206073 119206266 -40393517 + MER33 DNA MER1_type 28 210 -114 3 1494 248 305 76 23 chr3 119206273 119206444 -40393339 + L1MD3 LINE L1 7799 7978 -17 3 1494 288 200 0 0 chr3 119206835 119206900 -40392883 + A-rich Low_complexity Low_complexity 1 65 0 3 1494 397 284 124 0 chr3 119207359 119207524 -40392259 + MER112 DNA MER1_type 3 186 -75 3 1494 288 263 213 40 chr3 119207825 119208027 -40391756 + MLT1H2 LTR MaLR 39 275 -280 3 1494 6152 97 19 1 chr3 119208062 119209463 -40390320 - L1_Mus3 LINE L1 -328 6310 4883 3 1494 2194 70 10 3 chr3 119209465 119209765 -40390018 + L1_Mus3 LINE L1 6332 6633 -5 3 1494 668 54 0 21 chr3 119209776 119209870 -40389913 + (GAAAA)n Simple_repeat Simple_repeat 2 93 0 3 1494 252 0 0 0 chr3 119209942 119209970 -40389813 + (A)n Simple_repeat Simple_repeat 1 28 0 3 1494 351 280 73 29 chr3 119209992 119210128 -40389655 + MLT1H2 LTR MaLR 348 489 0 3 1494 266 284 0 33 chr3 119210355 119210446 -40389337 + CT-rich Low_complexity Low_complexity 2 89 0 3 1494 377 20 0 20 chr3 119210453 119210504 -40389279 + (TC)n Simple_repeat Simple_repeat 1 50 0 3 1494 600 14 0 0 chr3 119210504 119210573 -40389210 + (TTC)n Simple_repeat Simple_repeat 3 71 0 3 1494 345 47 0 0 chr3 119210593 119210636 -40389147 + (TTTTG)n Simple_repeat Simple_repeat 3 45 0 3 1494 374 342 66 22 chr3 119210728 119211048 -40388735 - Lx8 LINE L1 -237 7236 6903 3 1494 423 0 0 0 chr3 119212810 119212857 -40386926 + (TG)n Simple_repeat Simple_repeat 1 47 0 3 1494 371 310 128 20 chr3 119212919 119213067 -40386716 - B4 SINE B4 -128 164 1 3 1494 297 0 0 0 chr3 119213504 119213537 -40386246 + (A)n Simple_repeat Simple_repeat 1 33 0 3 1494 255 93 0 0 chr3 119213751 119213794 -40385989 + (A)n Simple_repeat Simple_repeat 1 43 0 3 1494 468 35 0 0 chr3 119214437 119214495 -40385288 + (CA)n Simple_repeat Simple_repeat 1 58 0 3 1494 547 283 125 18 chr3 119214588 119214916 -40384867 - L1ME1 LINE L1 -285 5894 5532 3 1494 324 266 79 9 chr3 119214949 119215063 -40384720 - L1ME1 LINE L1 -803 5376 5255 3 1494 265 279 76 59 chr3 119215191 119215309 -40384474 - MER34 LTR ERV1 -71 471 352 3 1494 321 286 103 35 chr3 119215594 119215739 -40384044 - LTR48 LTR ERV1 -632 155 1 3 1494 410 306 150 18 chr3 119215874 119216100 -40383683 + L2 LINE L2 2233 2488 -931 3 1494 202 348 35 58 chr3 119216132 119216306 -40383477 + L2 LINE L2 2646 2815 -604 3 1494 183 284 235 0 chr3 119216360 119216441 -40383342 + L2 LINE L2 2811 2910 -509 3 1494 338 269 103 11 chr3 119217976 119218117 -40381666 - MIRc SINE MIR -66 202 42 3 1494 239 172 66 44 chr3 119218346 119218437 -40381346 - Tigger14a DNA MER2_type -86 238 146 3 1494 317 304 33 74 chr3 119220860 119220981 -40378802 + MTEb LTR MaLR 1 116 -263 3 1494 1677 112 16 8 chr3 119221461 119221712 -40378071 - RLTR13D2 LTR ERVK 0 1023 771 3 1494 946 81 73 0 chr3 119221715 119221851 -40377932 + B1_Mm SINE Alu 2 147 0 3 1494 244 91 0 0 chr3 119221856 119221889 -40377894 + (GGA)n Simple_repeat Simple_repeat 3 35 0 3 1494 1042 125 0 11 chr3 119221889 119221999 -40377784 + (GAA)n Simple_repeat Simple_repeat 3 111 0 3 1494 1221 106 0 0 chr3 119221999 119222179 -40377604 + (GGA)n Simple_repeat Simple_repeat 1 180 0 3 1494 1212 111 0 3 chr3 119222179 119222430 -40377353 + (GAA)n Simple_repeat Simple_repeat 1 250 0 3 1494 3345 118 60 23 chr3 119222434 119223082 -40376701 - RLTR13D2 LTR ERVK -243 780 1 3 1494 180 270 0 0 chr3 119223372 119223409 -40376374 - MIRc SINE MIR -113 155 119 3 1494 180 135 0 0 chr3 119224375 119224412 -40375371 + (TCTG)n Simple_repeat Simple_repeat 2 38 0 3 1494 31 44 0 0 chr3 119224545 119224590 -40375193 + AT_rich Low_complexity Low_complexity 1 45 0 3 1494 813 65 0 0 chr3 119224611 119224719 -40375064 + (GA)n Simple_repeat Simple_repeat 1 108 0 3 1494 237 180 0 0 chr3 119226775 119226825 -40372958 + (TTGG)n Simple_repeat Simple_repeat 3 52 0 3 1494 743 320 19 10 chr3 119226835 119227043 -40372740 - ID_B1 SINE B4 -13 211 2 3 1494 891 28 0 0 chr3 119227209 119227315 -40372468 + (GA)n Simple_repeat Simple_repeat 1 106 0 3 1494 25 0 0 0 chr3 119227957 119227982 -40371801 + AT_rich Low_complexity Low_complexity 1 25 0 3 1494 389 150 25 0 chr3 119228347 119228427 -40371356 + CT-rich Low_complexity Low_complexity 3 84 0 3 1494 654 160 0 0 chr3 119228771 119228902 -40370881 + CT-rich Low_complexity Low_complexity 2 132 0 3 1494 226 340 59 40 chr3 119229096 119229197 -40370586 + MIRb SINE MIR 34 136 -132 3 1494 198 349 35 46 chr3 119229407 119229494 -40370289 - L3 LINE CR1 -485 4004 3919 3 1494 1219 84 73 0 chr3 119230169 119230347 -40369436 - B2_Mm2 SINE B2 -2 193 3 3 1494 242 218 164 0 chr3 119233554 119233609 -40366174 + MLT1K LTR MaLR 336 399 -196 3 1494 28478 96 42 7 chr3 119234018 119236780 -40363003 + L1Md_F LINE L1 557 3469 -2414 3 1494 2369 102 196 0 chr3 119236780 119237143 -40362640 + RLTR10C LTR ERVK 1 434 -2 3 1494 28478 80 39 4 chr3 119237143 119239248 -40360535 + L1Md_F LINE L1 3470 5595 -288 3 1494 378 141 43 0 chr3 119239248 119239340 -40360443 + L1Md_F3 LINE L1 6472 6567 -17 3 1494 623 206 0 0 chr3 119239383 119239490 -40360293 - B3A SINE B2 -85 113 7 3 1494 309 89 0 0 chr3 119239506 119239551 -40360232 + (GTTTG)n Simple_repeat Simple_repeat 4 48 0 3 1494 204 97 0 0 chr3 119239585 119239616 -40360167 + (TTGG)n Simple_repeat Simple_repeat 3 33 0 3 1494 423 0 0 0 chr3 119239659 119239706 -40360077 + (TG)n Simple_repeat Simple_repeat 2 48 0 3 1494 23 33 0 0 chr3 119239788 119239818 -40359965 + AT_rich Low_complexity Low_complexity 1 30 0 3 1494 796 305 52 48 chr3 119240099 119240371 -40359412 + B4A SINE B4 6 278 -14 3 1494 195 42 0 0 chr3 119241192 119241216 -40358567 + (TAA)n Simple_repeat Simple_repeat 2 25 0 3 1494 242 346 26 0 chr3 119244777 119244855 -40354928 - Tigger5 DNA MER2_type -2172 234 155 3 1494 4090 47 0 0 chr3 119244855 119245368 -40354415 - L1Md_F2 LINE L1 -245 6337 5825 3 1494 1231 306 108 76 chr3 119246851 119248060 -40351723 + Charlie1 DNA MER1_type 1454 2701 -80 3 1494 213 94 0 0 chr3 119248775 119248807 -40350976 + (A)n Simple_repeat Simple_repeat 1 32 0 3 1494 211 214 0 23 chr3 119250090 119250133 -40349650 + (CA)n Simple_repeat Simple_repeat 2 43 0 3 1494 915 192 11 6 chr3 119251006 119251184 -40348599 + ORR1D1 LTR MaLR 169 347 -27 3 1494 868 234 0 16 chr3 119251197 119251388 -40348395 - ORR1D1 LTR MaLR -186 188 1 3 1494 370 311 4 129 chr3 119251432 119251672 -40348111 + Lx8 LINE L1 6583 6792 -681 3 1494 809 86 0 0 chr3 119251687 119251792 -40347991 - B1_Mm SINE Alu -7 140 36 3 1494 292 198 106 47 chr3 119251723 119251808 -40347975 - RLTR25B LTR ERVK -519 509 420 3 1494 532 250 161 0 chr3 119251808 119251988 -40347795 + Lx8 LINE L1 6801 7009 -464 3 1494 250 246 0 34 chr3 119252039 119252098 -40347685 + 5S rRNA rRNA 29 85 -36 3 1494 303 127 0 0 chr3 119252207 119252262 -40347521 + L1Md_A LINE L1 663 717 -6007 3 1494 5505 8 0 0 chr3 119252264 119252915 -40346868 + L1Md_A LINE L1 4936 5586 -297 3 1494 9045 4 0 0 chr3 119252915 119253911 -40345872 + L1Md_A LINE L1 5587 6582 0 3 1494 11263 26 0 0 chr3 119253911 119255296 -40344487 + L1Md_A LINE L1 4202 5586 -297 3 1494 8335 38 0 1 chr3 119255296 119256293 -40343490 + L1Md_A LINE L1 5587 6582 0 3 1494 3286 150 43 10 chr3 119256495 119257096 -40342687 - L1_Mur2 LINE L1 -148 5729 5109 3 1494 5167 172 45 26 chr3 119257096 119258094 -40341689 - RLTR25B LTR ERVK 0 1028 12 3 1494 1945 179 5 11 chr3 119258104 119258482 -40341301 - L1_Mur2 LINE L1 -762 5115 4740 3 1494 3023 176 92 20 chr3 119258476 119259047 -40340736 + Lx5 LINE L1 6395 6992 -58 3 1494 804 11 0 0 chr3 119259047 119259140 -40340643 + (GGAGA)n Simple_repeat Simple_repeat 2 94 0 3 1494 3023 176 92 20 chr3 119259140 119259177 -40340606 + Lx5 LINE L1 6993 7047 -3 3 1494 23 0 0 0 chr3 119259183 119259206 -40340577 + AT_rich Low_complexity Low_complexity 1 23 0 3 1494 226 132 19 19 chr3 119259555 119259609 -40340174 + (TATAA)n Simple_repeat Simple_repeat 4 57 0 3 1494 257 286 52 35 chr3 119261211 119261327 -40338456 + MLT1C LTR MaLR 313 430 -37 3 1494 337 333 6 74 chr3 119261689 119261864 -40337919 + RSINE1 SINE B4 3 165 0 3 1494 183 307 66 47 chr3 119262334 119262440 -40337343 + L2c LINE L2 3059 3166 -221 3 1494 233 286 62 125 chr3 119262618 119262778 -40337005 + LTR81B LTR ERV1? 245 394 -999 3 1494 797 331 48 29 chr3 119262909 119263283 -40336500 - MLT1B LTR MaLR -7 383 3 3 1494 13503 158 31 10 chr3 119263569 119266630 -40333153 + Lx2B LINE L1 857 3957 -1929 3 1494 4566 163 24 33 chr3 119266621 119266953 -40332830 + Lx2B LINE L1 4974 5300 -586 3 1494 1102 110 0 0 chr3 119266953 119267098 -40332685 + B1_Mus1 SINE Alu 2 146 -2 3 1494 340 55 18 18 chr3 119267098 119267154 -40332629 + (TAA)n Simple_repeat Simple_repeat 2 57 0 3 1494 7999 136 36 17 chr3 119267154 119268827 -40330956 + Lx2B LINE L1 5301 6995 -5 3 1494 186 43 0 0 chr3 119270323 119270346 -40329437 + (CATATA)n Simple_repeat Simple_repeat 1 23 0 3 1494 33 73 0 0 chr3 119270527 119270595 -40329188 + AT_rich Low_complexity Low_complexity 1 68 0 3 1494 1452 70 16 0 chr3 119271325 119271512 -40328271 + B2_Mm2 SINE B2 1 190 -5 3 1494 501 287 57 11 chr3 119271874 119272050 -40327733 - MER57E1 LTR ERV1 -2 370 187 3 1494 1492 174 151 97 chr3 119272058 119272235 -40327548 - RMER6D LTR ERVK -272 448 301 4 1494 1613 94 30 98 chr3 119272235 119272530 -40327253 - Lx2A LINE L1 -9 6999 6725 4 1494 1492 174 151 97 chr3 119272530 119272777 -40327006 - RMER6D LTR ERVK -420 300 1 4 1494 582 15 0 0 chr3 119274004 119274071 -40325712 + (TTG)n Simple_repeat Simple_repeat 2 68 0 4 1494 421 248 150 0 chr3 119275076 119275209 -40324574 - RMER15 LTR ERVL 0 575 423 4 1495 202 368 35 0 chr3 119275630 119275717 -40324066 - MIR3 SINE MIR -3 205 116 4 1495 356 226 0 0 chr3 119275829 119275891 -40323892 + tRNA-Ala-GCY_ tRNA tRNA 5 66 -9 4 1495 248 0 0 30 chr3 119276323 119276356 -40323427 + (TTTTG)n Simple_repeat Simple_repeat 3 34 0 4 1495 1078 275 63 44 chr3 119276478 119276874 -40322909 + MTE2b LTR MaLR 3 404 -15 4 1495 2138 68 7 0 chr3 119276908 119277188 -40322595 + L1_Mus1 LINE L1 6286 6567 0 4 1495 488 333 18 0 chr3 119277319 119277487 -40322296 + MLT1A1 LTR MaLR 233 403 -5 4 1495 208 171 0 24 chr3 119277543 119277585 -40322198 + (CAT)n Simple_repeat Simple_repeat 2 42 0 4 1495 283 368 46 37 chr3 119279196 119279413 -40320370 + MIR SINE MIR 2 220 -42 4 1495 200 188 0 0 chr3 119279920 119279952 -40319831 + polypurine Low_complexity Low_complexity 4 35 0 4 1495 639 26 0 0 chr3 119280628 119280705 -40319078 + (TC)n Simple_repeat Simple_repeat 1 77 0 4 1495 394 324 97 26 chr3 119280897 119281166 -40318617 + B4A SINE B4 2 289 -3 4 1495 217 245 20 0 chr3 119282492 119282541 -40317242 + (CA)n Simple_repeat Simple_repeat 1 50 0 4 1495 247 299 83 33 chr3 119282649 119282770 -40317013 - MIRm SINE MIR -90 186 60 4 1495 397 344 37 74 chr3 119282786 119282949 -40316834 + B4 SINE B4 48 204 -88 4 1495 656 258 0 0 chr3 119282838 119282962 -40316821 + B1_Mur1 SINE Alu 5 128 -21 4 1495 1131 75 14 0 chr3 119283042 119283189 -40316594 - B1_Mur4 SINE Alu -1 149 1 4 1495 279 206 35 70 chr3 119283553 119283668 -40316115 + MER33 DNA MER1_type 122 232 -92 4 1495 541 268 0 60 chr3 119283670 119283821 -40315962 + B3A SINE B2 1 142 -56 4 1495 346 181 36 0 chr3 119284261 119284344 -40315439 + L1ME2z LINE L1 4450 4535 -1611 4 1495 1073 141 0 0 chr3 119284517 119284694 -40315089 - L1_Mur2 LINE L1 -1655 4222 4046 4 1495 1796 182 2 63 chr3 119284692 119285137 -40314646 - L1_Mur2 LINE L1 -3701 2176 1759 4 1495 6708 168 38 10 chr3 119285151 119286695 -40313088 + Lx2B LINE L1 5410 6994 -6 4 1495 2359 163 75 8 chr3 119286740 119287325 -40312458 - L1_Mur2 LINE L1 -4106 1771 1156 4 1495 649 330 28 9 chr3 119287359 119287570 -40312213 + Lx5 LINE L1 6831 7045 -5 4 1495 21 0 0 0 chr3 119287785 119287806 -40311977 + AT_rich Low_complexity Low_complexity 1 21 0 4 1495 527 289 6 70 chr3 119287968 119288139 -40311644 + RSINE1 SINE B4 4 163 -2 4 1495 269 227 13 0 chr3 119288303 119288378 -40311405 + L1ME2z LINE L1 5153 5228 -918 4 1495 537 44 0 0 chr3 119288381 119288449 -40311334 + (TG)n Simple_repeat Simple_repeat 1 68 0 4 1495 303 299 22 0 chr3 119288468 119288602 -40311181 + L1ME2z LINE L1 5678 5814 -348 4 1495 734 242 12 48 chr3 119288611 119288832 -40310951 + B3A SINE B2 2 216 0 4 1495 234 339 43 0 chr3 119288853 119289039 -40310744 + L1ME2z LINE L1 5845 6038 -406 4 1495 5889 140 59 18 chr3 119289938 119290992 -40308791 - Lx3C LINE L1 -2 6974 5878 4 1495 802 138 0 0 chr3 119290994 119291117 -40308666 - Lx3C LINE L1 -1263 5713 5591 4 1495 437 126 36 0 chr3 119291584 119291695 -40308088 + GA-rich Low_complexity Low_complexity 2 116 0 4 1495 198 0 0 0 chr3 119292234 119292256 -40307527 + (TA)n Simple_repeat Simple_repeat 2 23 0 4 1495 458 314 87 108 chr3 119292742 119293121 -40306662 - MLT1B LTR MaLR -14 376 6 4 1495 670 284 80 74 chr3 119293354 119293731 -40306052 + MTEa LTR MaLR 1 379 0 4 1495 973 297 64 38 chr3 119293842 119294185 -40305598 + MTD LTR MaLR 53 404 -15 4 1495 23 0 0 0 chr3 119295086 119295109 -40304674 + AT_rich Low_complexity Low_complexity 1 23 0 4 1495 224 303 56 11 chr3 119295250 119295340 -40304443 + L2 LINE L2 1436 1529 -1890 4 1495 233 239 0 0 chr3 119295740 119295786 -40303997 + L2 LINE L2 2388 2433 -986 4 1495 1393 210 123 3 chr3 119295970 119296304 -40303479 + ORR1D1 LTR MaLR 1 374 0 4 1495 255 265 0 42 chr3 119297561 119297632 -40302151 + MLT1D LTR MaLR 113 180 -447 4 1495 464 273 204 15 chr3 119297687 119297888 -40301895 + MLT1D LTR MaLR 259 497 -8 4 1495 760 137 158 58 chr3 119298107 119298278 -40301505 + ORR1D1 LTR MaLR 2 189 -185 4 1495 1098 230 116 80 chr3 119298281 119298758 -40301025 - RMER2 LTR ERV1 0 567 1 4 1495 673 191 114 24 chr3 119298761 119298927 -40300856 + ORR1D1 LTR MaLR 194 374 0 4 1495 651 116 0 0 chr3 119299655 119299776 -40300007 + (TC)n Simple_repeat Simple_repeat 2 122 0 4 1495 1005 118 0 0 chr3 119299793 119300159 -40299624 + (TC)n Simple_repeat Simple_repeat 1 366 0 4 1495 581 326 0 0 chr3 119300182 119300329 -40299454 - RSINE1 SINE B4 -17 148 2 4 1495 182 98 58 19 chr3 119300649 119300701 -40299082 + CT-rich Low_complexity Low_complexity 3 56 0 4 1495 508 269 74 47 chr3 119301903 119302055 -40297728 + RSINE1 SINE B4 3 159 -6 4 1495 703 105 34 23 chr3 119302055 119302231 -40297552 + (CAGAGA)n Simple_repeat Simple_repeat 3 180 0 4 1495 207 300 0 0 chr3 119302475 119302535 -40297248 + (TG)n Simple_repeat Simple_repeat 2 61 0 4 1495 516 324 66 4 chr3 119302748 119302974 -40296809 + MER67C LTR ERV1 1 240 -471 4 1495 344 40 20 0 chr3 119303936 119303986 -40295797 + (TAGG)n Simple_repeat Simple_repeat 1 51 0 4 1495 520 319 28 0 chr3 119303991 119304135 -40295648 - RSINE1 SINE B4 -15 150 3 4 1495 204 125 0 0 chr3 119304364 119304396 -40295387 + (A)n Simple_repeat Simple_repeat 1 32 0 4 1495 498 33 0 0 chr3 119305957 119306017 -40293766 + (TCC)n Simple_repeat Simple_repeat 3 62 0 4 1495 242 159 0 31 chr3 119307578 119307643 -40292140 + GA-rich Low_complexity Low_complexity 3 65 0 4 1495 239 281 0 135 chr3 119307874 119307948 -40291835 + ID4_ SINE ID 11 74 -9 4 1495 729 278 84 0 chr3 119307890 119308081 -40291702 + ID_B1 SINE B4 18 224 0 4 1495 265 156 0 0 chr3 119308137 119308182 -40291601 + ID_B1 SINE B4 177 221 -3 4 1495 657 0 0 0 chr3 119309587 119309660 -40290123 + (TC)n Simple_repeat Simple_repeat 2 74 0 4 1495 1190 260 55 81 chr3 119309833 119310050 -40289733 - MTEa LTR MaLR -4 375 184 4 1495 1664 172 11 56 chr3 119310050 119310426 -40289357 + RLTR15 LTR ERVK 1 359 0 4 1495 1190 260 55 81 chr3 119310426 119310593 -40289190 - MTEa LTR MaLR -196 183 1 4 1495 2367 305 113 14 chr3 119310595 119310806 -40288977 - MTEa-int LTR MaLR -2 1578 1342 4 1495 357 62 0 0 chr3 119310806 119310854 -40288929 + (CATA)n Simple_repeat Simple_repeat 2 49 0 4 1495 2367 305 113 14 chr3 119310854 119311467 -40288316 - MTEa-int LTR MaLR -239 1341 674 4 1495 8420 114 40 8 chr3 119311481 119312431 -40287352 - Lx2 LINE L1 0 6997 6005 4 1495 4397 18 0 0 chr3 119312431 119312924 -40286859 + MT2_Mm LTR ERVL 1 493 0 4 1495 8420 126 30 5 chr3 119312924 119313663 -40286120 - Lx2 LINE L1 -993 6004 5256 4 1495 324 372 27 14 chr3 119313663 119313810 -40285973 - MTEa-int LTR MaLR -907 673 525 4 1495 4938 97 56 15 chr3 119314437 119315151 -40284632 - Lx3_Mus LINE L1 0 7009 6267 4 1495 2002 76 69 9 chr3 119315151 119315249 -40284534 + Lx3_Mus LINE L1 5810 5908 -1101 4 1495 276 30 0 0 chr3 119315249 119315282 -40284501 + (GAAAA)n Simple_repeat Simple_repeat 2 34 0 4 1495 2002 76 69 9 chr3 119315282 119315442 -40284341 + Lx3_Mus LINE L1 5909 6084 -925 4 1495 189 0 0 0 chr3 119315442 119315463 -40284320 + (AGGGGG)n Simple_repeat Simple_repeat 2 22 0 4 1495 2002 77 1032 6 chr3 119315463 119315555 -40284228 + Lx3_Mus LINE L1 6085 6144 -865 4 1495 776 238 5 9 chr3 119315643 119315855 -40283928 - Lx2B LINE L1 -7 6993 6783 4 1495 2590 92 8 3 chr3 119315865 119316256 -40283527 - L1_Mur2 LINE L1 -1943 3934 3542 4 1495 2184 109 3 11 chr3 119316256 119316608 -40283175 + Lx4B LINE L1 5724 6072 -986 4 1495 3951 163 28 53 chr3 119316608 119317398 -40282385 + Lx4B LINE L1 6289 7058 0 4 1495 1133 113 6 0 chr3 119317432 119317609 -40282174 + (GGAA)n Simple_repeat Simple_repeat 3 180 0 4 1495 648 0 0 0 chr3 119317610 119317682 -40282101 + (GAAA)n Simple_repeat Simple_repeat 1 72 0 4 1495 616 251 66 33 chr3 119317684 119317865 -40281918 + B3 SINE B2 29 215 -1 4 1495 386 243 10 36 chr3 119317871 119318038 -40281745 - B3A SINE B2 -2 214 1 4 1495 337 279 71 18 chr3 119318135 119318248 -40281535 + MER58B DNA MER1_type 221 339 -2 4 1495 343 264 155 14 chr3 119319872 119320014 -40279769 + MIR SINE MIR 22 183 -79 4 1495 329 131 66 0 chr3 119320055 119320116 -40279667 - L1_Mur1 LINE L1 -789 5097 5033 4 1495 3905 122 42 6 chr3 119320544 119321230 -40278553 - Lx3B LINE L1 -194 5692 4982 4 1495 5981 110 22 18 chr3 119321230 119322213 -40277570 + Lx3B LINE L1 5693 6679 -294 4 1495 320 319 8 8 chr3 119322253 119322373 -40277410 - L1MA9 LINE L1 -379 5933 5814 4 1495 236 143 18 0 chr3 119322385 119322441 -40277342 + (GTTTG)n Simple_repeat Simple_repeat 2 58 0 4 1495 308 168 39 19 chr3 119322683 119322786 -40276997 + T-rich Low_complexity Low_complexity 4 108 0 4 1495 245 286 25 38 chr3 119322812 119322892 -40276891 + B3A SINE B2 1 79 -119 4 1495 3321 113 4 0 chr3 119323212 119323900 -40275883 + Lx LINE L1 5355 6045 -609 4 1495 347 264 64 186 chr3 119323900 119324072 -40275711 - MTE2a LTR MaLR -223 156 6 4 1495 1000 245 54 36 chr3 119324240 119324519 -40275264 + B4A SINE B4 9 292 0 4 1495 292 60 0 57 chr3 119327471 119327524 -40272259 + (TTTC)n Simple_repeat Simple_repeat 3 52 0 4 1495 783 102 0 0 chr3 119328103 119328240 -40271543 + (CA)n Simple_repeat Simple_repeat 2 138 0 4 1495 325 336 40 8 chr3 119328530 119328656 -40271127 + MIRb SINE MIR 25 154 -114 4 1495 479 264 90 8 chr3 119328988 119329110 -40270673 + ID_B1 SINE B4 82 213 -11 4 1495 201 121 0 0 chr3 119329355 119329388 -40270395 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 4 1495 540 106 0 0 chr3 119329706 119329791 -40269992 + (CA)n Simple_repeat Simple_repeat 2 86 0 4 1495 1053 46 0 0 chr3 119330061 119330192 -40269591 + (TC)n Simple_repeat Simple_repeat 2 132 0 4 1495 230 156 0 15 chr3 119330192 119330257 -40269526 + (TG)n Simple_repeat Simple_repeat 2 65 0 4 1495 822 125 6 11 chr3 119330256 119330434 -40269349 + (TC)n Simple_repeat Simple_repeat 2 178 0 4 1495 348 24 0 0 chr3 119331506 119331547 -40268236 + (CA)n Simple_repeat Simple_repeat 2 42 0 4 1495 414 0 0 0 chr3 119331547 119331592 -40268191 + (GA)n Simple_repeat Simple_repeat 2 47 0 4 1495 471 252 114 38 chr3 119332383 119332515 -40267268 + RSINE1 SINE B4 2 143 -22 4 1495 21 36 0 0 chr3 119332543 119332571 -40267212 + AT_rich Low_complexity Low_complexity 1 28 0 4 1495 671 263 73 49 chr3 119332660 119332864 -40266919 + B3 SINE B2 1 209 -7 4 1495 1064 262 11 32 chr3 119333652 119333936 -40265847 + B4A SINE B4 2 279 -13 4 1495 186 156 0 0 chr3 119333941 119333986 -40265797 + (TA)n Simple_repeat Simple_repeat 1 45 0 5 1495 1227 151 27 9 chr3 119334336 119334557 -40265226 + Lx LINE L1 6415 6639 -15 5 1495 738 0 0 0 chr3 119334557 119334639 -40265144 + (GAAA)n Simple_repeat Simple_repeat 3 84 0 5 1495 1296 84 0 0 chr3 119334641 119334820 -40264963 + (GGGAA)n Simple_repeat Simple_repeat 2 180 0 5 1495 180 0 0 0 chr3 119334820 119334840 -40264943 + (GAGAA)n Simple_repeat Simple_repeat 1 20 0 5 1495 500 310 80 0 chr3 119335099 119335286 -40264497 + B3 SINE B2 4 205 -11 5 1495 21 0 0 0 chr3 119335306 119335327 -40264456 + AT_rich Low_complexity Low_complexity 1 21 0 5 1495 210 71 0 0 chr3 119335498 119335526 -40264257 + (TAAA)n Simple_repeat Simple_repeat 3 30 0 5 1495 492 18 0 0 chr3 119335587 119335644 -40264139 + (TG)n Simple_repeat Simple_repeat 1 57 0 5 1495 551 299 103 80 chr3 119335666 119335928 -40263855 - B4 SINE B4 -23 269 2 5 1495 225 0 0 0 chr3 119335947 119335972 -40263811 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 5 1495 1663 281 93 30 chr3 119335973 119336770 -40263013 - L1MB1 LINE L1 -114 6075 5232 5 1495 273 214 39 0 chr3 119336800 119336903 -40262880 + (TA)n Simple_repeat Simple_repeat 1 107 0 5 1495 50 51 0 0 chr3 119336904 119336982 -40262801 + AT_rich Low_complexity Low_complexity 1 78 0 5 1495 1988 161 15 7 chr3 119337243 119337651 -40262132 - Lx2A LINE L1 -9 6999 6635 5 1495 528 224 0 22 chr3 119337654 119337837 -40261946 + (CA)n Simple_repeat Simple_repeat 2 180 0 5 1495 360 234 6 39 chr3 119337853 119338035 -40261748 + (CATATA)n Simple_repeat Simple_repeat 1 176 0 5 1495 23 0 0 0 chr3 119338079 119338102 -40261681 + AT_rich Low_complexity Low_complexity 1 23 0 5 1495 760 245 91 4 chr3 119339496 119339726 -40260057 - RCHARR1 DNA MER1_type 0 974 725 5 1495 585 287 8 0 chr3 119339730 119339859 -40259924 + RSINE1 SINE B4 17 146 -19 5 1495 25 31 0 0 chr3 119339871 119339903 -40259880 + AT_rich Low_complexity Low_complexity 1 32 0 5 1495 979 225 24 61 chr3 119339903 119340197 -40259586 - RCHARR1 DNA MER1_type -226 748 466 5 1495 3087 198 74 159 chr3 119340197 119341250 -40258533 - RMER1B Other Other -20 1046 83 5 1495 292 188 0 0 chr3 119341250 119341298 -40258485 + polypyrimidine Low_complexity Low_complexity 3 50 0 5 1495 228 231 0 0 chr3 119341795 119341847 -40257936 - RCHARR1 DNA MER1_type -482 492 441 5 1495 244 310 14 0 chr3 119341853 119341924 -40257859 - RCHARR1 DNA MER1_type -846 128 57 5 1495 244 305 21 10 chr3 119342456 119342552 -40257231 + CT-rich Low_complexity Low_complexity 6 102 0 5 1495 272 303 6 11 chr3 119342652 119342761 -40257022 + MTEa LTR MaLR 272 378 -1 5 1495 51 51 0 0 chr3 119344154 119344233 -40255550 + AT_rich Low_complexity Low_complexity 1 79 0 5 1495 575 271 6 22 chr3 119344385 119344566 -40255217 - L1MC LINE L1 -693 5640 5463 5 1495 190 294 59 0 chr3 119344655 119344723 -40255060 + L2 LINE L2 462 533 -2886 5 1495 21 0 0 0 chr3 119345094 119345115 -40254668 + AT_rich Low_complexity Low_complexity 1 21 0 5 1495 290 288 64 46 chr3 119345374 119345483 -40254300 - L1ME1 LINE L1 -66 6113 6003 5 1495 493 238 146 80 chr3 119345534 119345808 -40253975 + B4 SINE B4 1 292 0 5 1495 247 246 52 98 chr3 119345889 119346030 -40253753 - L1ME1 LINE L1 -245 5919 5783 5 1495 1183 265 155 53 chr3 119346030 119346553 -40253230 + RMER4B LTR ERVK 1 576 -9 5 1495 901 234 46 14 chr3 119346650 119346867 -40252916 - Lx8 LINE L1 -629 6844 6621 5 1495 2157 239 67 43 chr3 119346882 119347493 -40252290 + Lx8 LINE L1 6848 7473 0 5 1495 347 0 23 0 chr3 119347971 119348014 -40251769 + (TAGA)n Simple_repeat Simple_repeat 1 44 0 5 1495 495 290 14 0 chr3 119348143 119348281 -40251502 - ID_B1 SINE B4 -5 219 80 5 1495 283 296 142 52 chr3 119348301 119348590 -40251193 - L1MEf LINE L1 -4708 1492 1178 5 1495 30643 90 16 29 chr3 119349015 119353773 -40246010 + L1Md_F2 LINE L1 371 5174 -709 5 1495 2739 39 6 0 chr3 119353773 119354084 -40245699 + L1Md_F2 LINE L1 6258 6570 -12 5 1495 30643 84 12 31 chr3 119354084 119354616 -40245167 + L1Md_F2 LINE L1 5175 5585 -298 5 1495 7842 58 30 7 chr3 119354617 119355591 -40244192 + L1Md_F2 LINE L1 5587 6582 0 5 1495 765 264 62 43 chr3 119356137 119356489 -40243294 + RLTR10D LTR ERVK 1 359 0 5 1495 555 296 75 81 chr3 119356755 119356911 -40242872 + B3A SINE B2 8 164 -29 5 1495 348 24 0 0 chr3 119356911 119356952 -40242831 + (CA)n Simple_repeat Simple_repeat 2 42 0 5 1495 308 296 76 82 chr3 119356952 119356981 -40242802 + B2_Mm1a SINE B2 165 192 -1 5 1495 471 118 0 0 chr3 119357618 119357694 -40242089 + (ATGGTG)n Simple_repeat Simple_repeat 5 80 0 5 1495 30713 10 0 0 chr3 119358815 119362934 -40236849 - L1Md_A LINE L1 0 6582 2463 5 1495 487 306 10 62 chr3 119363151 119363343 -40236440 + B3A SINE B2 2 183 -15 5 1495 648 38 0 0 chr3 119363356 119363435 -40236348 + (CA)n Simple_repeat Simple_repeat 1 79 0 5 1495 241 390 36 52 chr3 119363920 119364304 -40235479 - L3 LINE CR1 -513 3976 3599 5 1495 774 293 14 24 chr3 119365175 119365388 -40234395 + B3 SINE B2 6 216 0 5 1495 625 206 82 30 chr3 119365406 119365541 -40234242 + B1_Mur2 SINE Alu 1 142 -7 5 1495 348 24 0 0 chr3 119365542 119365583 -40234200 + (TTAA)n Simple_repeat Simple_repeat 1 41 0 5 1495 345 276 35 0 chr3 119368409 119368496 -40231287 + B3A SINE B2 1 90 -108 5 1495 15007 56 1 1 chr3 119368502 119370363 -40229420 - L1_Mm LINE L1 -403 5480 3620 5 1495 210 289 0 0 chr3 119370550 119370602 -40229181 - B1F1 SINE Alu -92 57 6 5 1495 225 340 71 10 chr3 119370848 119370946 -40228837 + B3 SINE B2 113 216 0 5 1495 2176 239 49 59 chr3 119370957 119371651 -40228132 + L1VL4 LINE L1 148 834 -5468 5 1495 29027 63 16 7 chr3 119371646 119375483 -40224300 - L1Md_F2 LINE L1 -659 5925 2039 5 1495 5603 54 3 0 chr3 119375483 119376132 -40223651 + L1Md_F2 LINE L1 5920 6570 -12 5 1495 17390 109 216 9 chr3 119376132 119377024 -40222759 + L1_Mus3 LINE L1 1112 1993 -3890 5 1495 216 0 0 0 chr3 119377024 119377048 -40222735 + (CACAA)n Simple_repeat Simple_repeat 3 26 0 5 1495 17390 118 243 10 chr3 119377048 119380333 -40219450 + L1_Mus3 LINE L1 1994 6596 -42 5 1495 803 256 70 11 chr3 119381606 119381792 -40217991 - B3A SINE B2 -1 197 1 5 1495 845 303 128 21 chr3 119381796 119382133 -40217650 - Lx8 LINE L1 -135 7338 6966 5 1495 498 17 0 0 chr3 119382656 119382715 -40217068 + (TG)n Simple_repeat Simple_repeat 2 60 0 5 1495 25 31 0 0 chr3 119384000 119384032 -40215751 + AT_rich Low_complexity Low_complexity 1 32 0 5 1495 426 88 0 0 chr3 119384103 119384171 -40215612 + (TAGG)n Simple_repeat Simple_repeat 2 69 0 5 1495 921 58 0 0 chr3 119384182 119384302 -40215481 + (TGGA)n Simple_repeat Simple_repeat 1 120 0 5 1495 628 213 138 14 chr3 119384304 119384442 -40215341 + RSINE1 SINE B4 5 159 -6 5 1495 244 258 218 32 chr3 119384695 119384819 -40214964 - ORR1E LTR MaLR -37 342 196 5 1495 376 261 126 0 chr3 119384832 119384951 -40214832 - ORR1E LTR MaLR -225 134 1 5 1495 570 329 6 42 chr3 119385063 119385228 -40214555 - B3A SINE B2 -38 160 2 5 1495 23 0 0 0 chr3 119385237 119385260 -40214523 + AT_rich Low_complexity Low_complexity 1 23 0 5 1495 357 24 0 0 chr3 119385277 119385319 -40214464 + (TG)n Simple_repeat Simple_repeat 1 42 0 5 1495 455 295 40 27 chr3 119385320 119385470 -40214313 - RSINE1 SINE B4 -11 154 3 5 1495 303 28 0 0 chr3 119386423 119386459 -40213324 + (GA)n Simple_repeat Simple_repeat 1 36 0 5 1495 249 108 0 0 chr3 119387019 119387056 -40212727 + (A)n Simple_repeat Simple_repeat 1 37 0 5 1495 423 0 0 0 chr3 119387062 119387109 -40212674 + (TC)n Simple_repeat Simple_repeat 1 47 0 5 1495 252 0 0 0 chr3 119387110 119387138 -40212645 + (TG)n Simple_repeat Simple_repeat 2 29 0 5 1495 315 0 0 0 chr3 119387728 119387763 -40212020 + (A)n Simple_repeat Simple_repeat 1 35 0 5 1495 309 295 62 0 chr3 119388161 119388273 -40211510 + ORR1E LTR MaLR 6 124 -235 5 1495 203 255 0 18 chr3 119388348 119388404 -40211379 + (TCTCTG)n Simple_repeat Simple_repeat 2 56 0 5 1495 618 285 83 60 chr3 119389125 119389390 -40210393 - B4A SINE B4 -7 285 15 5 1495 563 121 10 0 chr3 119389617 119389716 -40210067 + (TC)n Simple_repeat Simple_repeat 1 100 0 5 1495 450 0 0 0 chr3 119389718 119389768 -40210015 + (TA)n Simple_repeat Simple_repeat 2 51 0 5 1495 522 150 0 0 chr3 119390598 119390718 -40209065 + (TC)n Simple_repeat Simple_repeat 1 120 0 5 1495 378 0 0 0 chr3 119390718 119390760 -40209023 + (TG)n Simple_repeat Simple_repeat 1 42 0 5 1495 392 309 32 32 chr3 119391114 119391271 -40208512 + L2a LINE L2 3100 3256 -170 5 1495 455 95 39 51 chr3 119391378 119391534 -40208249 + (TAGA)n Simple_repeat Simple_repeat 1 154 0 5 1495 444 82 0 0 chr3 119392127 119392188 -40207595 + (TGGA)n Simple_repeat Simple_repeat 4 64 0 5 1495 360 0 0 0 chr3 119393064 119393104 -40206679 + (CA)n Simple_repeat Simple_repeat 1 40 0 5 1495 243 319 28 0 chr3 119393499 119393571 -40206212 + Charlie2a DNA MER1_type 39 112 -2749 5 1495 24 0 0 0 chr3 119395033 119395057 -40204726 + AT_rich Low_complexity Low_complexity 1 24 0 5 1495 1518 188 64 26 chr3 119395393 119395730 -40204053 - ORR1C2 LTR MaLR 0 384 1 5 1495 384 22 0 0 chr3 119395869 119395914 -40203869 + (CA)n Simple_repeat Simple_repeat 2 46 0 5 1495 1043 308 67 41 chr3 119395958 119396671 -40203112 - L1MA4 LINE L1 -387 5913 5124 5 1495 257 175 0 31 chr3 119396689 119396754 -40203029 + CT-rich Low_complexity Low_complexity 2 64 0 5 1495 255 103 0 0 chr3 119396805 119396844 -40202939 + (CA)n Simple_repeat Simple_repeat 1 39 0 5 1495 2002 195 71 10 chr3 119397804 119398197 -40201586 + MTD LTR MaLR 1 417 -2 5 1495 471 330 8 8 chr3 119398232 119398351 -40201432 - B3A SINE B2 -79 119 1 5 1495 464 183 21 21 chr3 119398655 119398750 -40201033 - PB1D10 SINE Alu -8 109 15 5 1495 219 293 123 74 chr3 119398784 119398810 -40200973 - B2_Mm2 SINE B2 -24 171 2 5 1495 488 262 7 73 chr3 119398810 119398946 -40200837 - RSINE1 SINE B4 -36 129 3 5 1495 23 0 0 0 chr3 119399187 119399210 -40200573 + AT_rich Low_complexity Low_complexity 1 23 0 5 1495 216 0 0 0 chr3 119401610 119401634 -40198149 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 5 1495 487 148 80 0 chr3 119401636 119401724 -40198059 - B1_Mus1 SINE Alu -52 96 2 5 1495 324 246 0 14 chr3 119401659 119401733 -40198050 - B4A SINE B4 -142 150 78 5 1495 1578 220 161 11 chr3 119402234 119402606 -40197177 + Lx6 LINE L1 6851 7278 -182 6 1495 353 136 0 15 chr3 119403003 119403070 -40196713 + GA-rich Low_complexity Low_complexity 3 68 0 6 1495 252 330 74 11 chr3 119403311 119403406 -40196377 - MER5A DNA MER1_type -73 116 16 6 1495 240 305 0 0 chr3 119404784 119404843 -40194940 + C-rich Low_complexity Low_complexity 3 61 0 6 1495 734 238 143 41 chr3 119405546 119405889 -40193894 + MTD LTR MaLR 1 413 -8 6 1495 249 310 34 11 chr3 119405887 119405975 -40193808 + PB1D7 SINE Alu 18 107 -13 6 1495 237 203 48 179 chr3 119406009 119406077 -40193706 + ID_B1 SINE B4 152 206 -18 6 186 4459 61 28 0 chr3 119406077 119406651 -40193132 + L1_Mus1 LINE L1 5978 6567 0 6 1496 237 203 48 179 chr3 119406651 119406666 -40193117 + ID_B1 SINE B4 207 224 0 6 1496 28 29 0 0 chr3 119406892 119406927 -40192856 + AT_rich Low_complexity Low_complexity 1 35 0 6 1496 420 257 98 7 chr3 119407110 119407263 -40192520 + L1_Rod LINE L1 5599 5765 -82 6 1496 286 335 148 87 chr3 119407263 119407446 -40192337 + B3A SINE B2 2 195 -3 6 1496 367 291 119 0 chr3 119408006 119408140 -40191643 - RMER20B LTR ERVK -354 273 124 6 1496 459 304 13 80 chr3 119408901 119408933 -40190850 + Lx5 LINE L1 985 1016 -6712 6 1496 872 53 69 0 chr3 119408933 119409064 -40190719 + L1_Mus2 LINE L1 6427 6566 0 6 1496 20505 159 45 87 chr3 119409064 119410123 -40189660 + Lx5 LINE L1 951 2059 -3818 6 1496 225 94 0 0 chr3 119410123 119410155 -40189628 + (CCA)n Simple_repeat Simple_repeat 1 32 0 6 1496 20505 165 74 101 chr3 119410155 119415256 -40184527 + Lx5 LINE L1 2060 6903 -147 6 1496 369 0 0 0 chr3 119415374 119415415 -40184368 + (TCCA)n Simple_repeat Simple_repeat 2 42 0 6 1496 554 284 182 26 chr3 119416397 119416818 -40182965 - Tigger9b DNA MER2_type -84 540 55 6 1496 23 0 0 0 chr3 119418543 119418566 -40181217 + AT_rich Low_complexity Low_complexity 1 23 0 6 1496 1892 69 0 24 chr3 119418916 119419169 -40180614 - L1_Mus1 LINE L1 -463 6104 5858 6 1496 234 0 0 0 chr3 119420990 119421016 -40178767 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 6 1496 279 237 17 0 chr3 119425088 119425147 -40174636 + MTE2b LTR MaLR 5 64 -315 6 1496 983 207 56 10 chr3 119425162 119425357 -40174426 + URR1A DNA MER1_type 1 204 -22 6 1496 791 343 18 28 chr3 119425363 119425645 -40174138 + MTE2b LTR MaLR 92 370 -9 6 1496 275 295 44 52 chr3 119425708 119425844 -40173939 + MLT1B LTR MaLR 252 386 -4 6 1496 338 250 83 0 chr3 119426080 119426152 -40173631 + ID4 SINE ID 2 79 -4 6 1496 220 280 8 60 chr3 119427758 119427891 -40171892 + GA-rich Low_complexity Low_complexity 5 130 0 6 1496 180 125 0 0 chr3 119429054 119429086 -40170697 + (CAG)n Simple_repeat Simple_repeat 1 32 0 6 1496 239 309 26 51 chr3 119430357 119430509 -40169274 - B4A SINE B4 -136 156 1 6 1496 298 236 130 19 chr3 119431271 119431379 -40168404 - Charlie1 DNA MER1_type -11 2770 2651 6 1496 26 0 0 0 chr3 119431715 119431741 -40168042 + AT_rich Low_complexity Low_complexity 1 26 0 6 1496 370 219 14 0 chr3 119433026 119433099 -40166684 - ID4_ SINE ID -9 74 1 6 1496 500 288 83 8 chr3 119433297 119433430 -40166353 + B1_Mur1 SINE Alu 6 148 -1 6 1496 1012 69 0 0 chr3 119433499 119433629 -40166154 - B1_Mm SINE Alu -6 141 12 6 1496 23 0 0 0 chr3 119433717 119433740 -40166043 + AT_rich Low_complexity Low_complexity 1 23 0 6 1496 399 301 29 19 chr3 119434511 119434616 -40165167 - PB1D10 SINE Alu -2 115 10 6 1496 22 35 0 0 chr3 119435626 119435655 -40164128 + AT_rich Low_complexity Low_complexity 1 29 0 6 1496 331 298 97 19 chr3 119435932 119436086 -40163697 + L1MD LINE L1 4663 4828 -1318 6 1496 2518 229 101 54 chr3 119437779 119438253 -40161530 + Lx7 LINE L1 6827 7324 -372 6 1496 192 40 0 0 chr3 119438253 119438278 -40161505 + (CATGT)n Simple_repeat Simple_repeat 5 29 0 6 1496 2518 229 101 54 chr3 119438278 119438634 -40161149 + Lx7 LINE L1 7325 7696 0 6 1496 353 258 27 96 chr3 119438675 119438821 -40160962 + B1F2 SINE Alu 2 137 -12 6 1496 182 333 36 24 chr3 119439294 119439377 -40160406 - MER5B DNA MER1_type -3 175 92 6 1496 448 275 85 108 chr3 119441210 119441422 -40158361 - B4A SINE B4 -85 207 1 6 1496 807 218 68 15 chr3 119442286 119442491 -40157292 + B3 SINE B2 1 216 0 6 1496 671 97 188 0 chr3 119445313 119445457 -40154326 + Lx2 LINE L1 6827 6997 0 6 1496 21 0 0 0 chr3 119445502 119445523 -40154260 + AT_rich Low_complexity Low_complexity 1 21 0 6 1496 514 288 311 4 chr3 119447021 119447265 -40152518 + Lx8 LINE L1 6829 7147 -326 6 1496 293 128 43 0 chr3 119447360 119447407 -40152376 + ORR1A1 LTR MaLR 22 70 -304 6 1496 342 192 81 6 chr3 119447404 119447494 -40152289 + ORR1A1 LTR MaLR 267 383 -1 6 1496 438 305 63 41 chr3 119452393 119452663 -40147120 - L1M5 LINE L1 -410 5763 5488 6 1496 213 216 38 38 chr3 119452675 119452728 -40147055 - PB1D10 SINE Alu -3 114 62 6 1496 378 0 0 0 chr3 119452903 119452945 -40146838 + (A)n Simple_repeat Simple_repeat 1 42 0 6 1496 302 276 0 55 chr3 119453982 119454092 -40145691 + ID4 SINE ID 15 118 -34 6 1496 22 35 0 0 chr3 119454129 119454158 -40145625 + AT_rich Low_complexity Low_complexity 1 29 0 6 1496 390 273 90 39 chr3 119455100 119455256 -40144527 + B3A SINE B2 4 167 -31 6 1496 26 64 0 0 chr3 119455537 119455584 -40144199 + AT_rich Low_complexity Low_complexity 1 47 0 6 1496 327 257 158 40 chr3 119456341 119456531 -40143252 - MER44D DNA MER2_type 0 705 504 6 1496 555 238 41 8 chr3 119456820 119456943 -40142840 - RSINE1 SINE B4 -36 129 3 6 1496 835 279 123 36 chr3 119457588 119457922 -40141861 + MTEb LTR MaLR 3 365 -14 6 1496 266 179 0 0 chr3 119458144 119458200 -40141583 - L1M4 LINE L1 -3831 2315 2260 6 1496 248 247 339 12 chr3 119458340 119458506 -40141277 - L1MC3 LINE L1 -62 6271 6052 6 1496 385 305 151 14 chr3 119458644 119458996 -40140787 - L1MC3 LINE L1 -1924 5861 5462 6 1496 1997 214 50 5 chr3 119459136 119459554 -40140229 + Lx5 LINE L1 6614 7050 0 6 1496 282 296 120 49 chr3 119459950 119460274 -40139509 - L1ME2 LINE L1 -239 5925 5579 6 1496 245 360 7 13 chr3 119460464 119460616 -40139167 - L1MC3 LINE L1 -1271 4875 4725 6 1496 4017 54 2 4 chr3 119461010 119461513 -40138270 - L1Md_F2 LINE L1 0 6582 6081 6 1496 180 0 0 0 chr3 119461736 119461756 -40138027 + (TA)n Simple_repeat Simple_repeat 1 20 0 6 1496 360 123 0 0 chr3 119461756 119461828 -40137955 + (CAGA)n Simple_repeat Simple_repeat 2 74 0 6 1496 1121 75 0 0 chr3 119461945 119462092 -40137691 - B1_Mus1 SINE Alu 0 148 2 6 1496 216 203 0 48 chr3 119462492 119462515 -40137268 + (TA)n Simple_repeat Simple_repeat 2 24 0 6 1496 225 0 0 0 chr3 119462515 119462540 -40137243 + (CA)n Simple_repeat Simple_repeat 2 26 0 6 1496 216 203 0 48 chr3 119462540 119462556 -40137227 + (TA)n Simple_repeat Simple_repeat 2 17 0 6 1496 357 82 0 0 chr3 119462556 119462605 -40137178 + (TG)n Simple_repeat Simple_repeat 2 50 0 6 1496 216 203 0 48 chr3 119462605 119462612 -40137171 + (TA)n Simple_repeat Simple_repeat 1 7 0 6 1496 1137 54 0 13 chr3 119462612 119462761 -40137022 - B1_Mus1 SINE Alu 0 148 2 6 1496 216 203 0 48 chr3 119462761 119462774 -40137009 + (TA)n Simple_repeat Simple_repeat 2 14 0 6 1496 29 60 0 0 chr3 119463706 119463756 -40136027 + AT_rich Low_complexity Low_complexity 1 50 0 6 1496 504 0 0 0 chr3 119464041 119464097 -40135686 + (TG)n Simple_repeat Simple_repeat 1 56 0 6 1496 259 271 39 77 chr3 119464136 119464240 -40135543 + PB1 SINE Alu 21 120 -7 6 1496 804 173 178 0 chr3 119464808 119464999 -40134784 - URR1A DNA MER1_type -1 225 1 6 1496 22 35 0 0 chr3 119465559 119465588 -40134195 + AT_rich Low_complexity Low_complexity 1 29 0 6 1496 189 0 0 0 chr3 119467050 119467071 -40132712 + (A)n Simple_repeat Simple_repeat 1 21 0 6 1496 664 290 137 33 chr3 119467630 119467901 -40131882 + MER21B LTR ERV1 142 440 -423 6 1496 574 270 172 32 chr3 119467926 119468205 -40131578 + MER21B LTR ERV1 525 842 -21 6 1496 1053 301 84 43 chr3 119468366 119469085 -40130698 + L1PB4 LINE L1 5017 5760 -120 6 1496 378 0 0 0 chr3 119469085 119469127 -40130656 + (GA)n Simple_repeat Simple_repeat 1 42 0 6 1496 1053 296 79 44 chr3 119469127 119469309 -40130474 + L1PB4 LINE L1 5729 5975 -181 6 1496 22 0 0 0 chr3 119469525 119469547 -40130236 + AT_rich Low_complexity Low_complexity 1 22 0 6 1496 730 103 60 0 chr3 119469550 119469667 -40130116 + B1_Mus1 SINE Alu 22 145 -3 6 1496 354 183 0 0 chr3 119469667 119469738 -40130045 + (TAGG)n Simple_repeat Simple_repeat 3 73 0 6 1496 448 261 0 98 chr3 119470195 119470327 -40129456 + PB1D7 SINE Alu 1 119 -1 6 1496 376 340 62 6 chr3 119470423 119470583 -40129200 - MER2B DNA MER2_type -14 322 154 6 1496 366 323 34 84 chr3 119471021 119471200 -40128583 + B4A SINE B4 3 172 -120 6 1496 1201 207 73 39 chr3 119471521 119471698 -40128085 - MTC LTR MaLR -125 296 110 6 1496 2771 32 88 0 chr3 119471698 119472041 -40127742 + L1Md_F3 LINE L1 6198 6570 -14 6 1496 1201 207 73 39 chr3 119472041 119472149 -40127634 - MTC LTR MaLR -312 109 1 6 1496 609 248 26 0 chr3 119472149 119472260 -40127523 - B3A SINE B2 -73 125 12 6 1496 308 255 21 0 chr3 119472670 119472764 -40127019 + L1MC LINE L1 5381 5476 -2406 6 1496 242 301 152 16 chr3 119472772 119472897 -40126886 - B4A SINE B4 -71 221 80 6 1496 25 0 0 0 chr3 119473323 119473348 -40126435 + AT_rich Low_complexity Low_complexity 1 25 0 6 1496 23 33 0 0 chr3 119473467 119473497 -40126286 + AT_rich Low_complexity Low_complexity 1 30 0 6 1496 716 193 264 6 chr3 119473660 119473827 -40125956 + B3 SINE B2 1 210 -6 6 1496 458 285 14 35 chr3 119474274 119474416 -40125367 + Lx8 LINE L1 7154 7292 -181 6 1496 1293 174 9 4 chr3 119475208 119475433 -40124350 + URR1A DNA MER1_type 1 226 0 6 1496 1013 122 14 0 chr3 119475918 119476065 -40123718 - B1_Mur3 SINE Alu 0 149 1 6 1496 2866 15 0 0 chr3 119477026 119477353 -40122430 + L1Md_T LINE L1 5260 5586 -297 6 1496 8493 29 0 0 chr3 119477353 119478349 -40121434 + L1Md_T LINE L1 5587 6582 0 6 1496 1186 216 131 30 chr3 119478806 119479177 -40120606 + MTD LTR MaLR 1 403 -16 6 1496 296 295 25 88 chr3 119479162 119479199 -40120584 + ID_B1 SINE B4 70 219 -5 6 1496 521 254 0 8 chr3 119479199 119479322 -40120461 + B1_Mur2 SINE Alu 23 144 -5 7 1496 38 22 0 0 chr3 119479323 119479368 -40120415 + AT_rich Low_complexity Low_complexity 1 45 0 7 1496 237 300 71 127 chr3 119479569 119479695 -40120088 + PB1 SINE Alu 2 120 -7 7 1496 222 37 0 0 chr3 119479699 119479726 -40120057 + (GAAAA)n Simple_repeat Simple_repeat 2 28 0 7 1496 312 297 129 52 chr3 119480229 119480630 -40119153 + L1ME2z LINE L1 4490 4942 -1198 7 1496 243 0 0 0 chr3 119480748 119480775 -40119008 + (TG)n Simple_repeat Simple_repeat 2 28 0 7 1496 415 296 188 10 chr3 119480810 119481114 -40118669 + L1ME2z LINE L1 4987 5344 -802 7 1496 1119 254 31 68 chr3 119481118 119481528 -40118255 + MT2A LTR ERVL 1 521 -80 7 1496 1354 176 57 129 chr3 119481528 119481914 -40117869 + ORR1B2 LTR MaLR 1 358 -9 7 1496 275 204 9 75 chr3 119481915 119481949 -40117834 + MT2A LTR ERVL 430 464 -69 7 1496 189 107 0 0 chr3 119481949 119481977 -40117806 + (CA)n Simple_repeat Simple_repeat 1 28 0 7 1496 275 204 9 75 chr3 119481977 119482048 -40117735 + MT2A LTR ERVL 465 528 -5 7 1496 472 217 25 42 chr3 119482055 119482175 -40117608 + PB1D9 SINE Alu 3 120 0 7 1496 841 226 163 14 chr3 119482222 119482826 -40116957 + L1ME2z LINE L1 5369 6077 -102 7 1496 367 179 0 43 chr3 119482842 119482959 -40116824 + (TG)n Simple_repeat Simple_repeat 2 113 0 7 1496 216 86 0 0 chr3 119484604 119484639 -40115144 + (T)n Simple_repeat Simple_repeat 1 35 0 7 1496 231 36 0 0 chr3 119485745 119485773 -40114010 + (CCG)n Simple_repeat Simple_repeat 2 29 0 7 1496 26 0 0 0 chr3 119486276 119486302 -40113481 + GC_rich Low_complexity Low_complexity 1 26 0 7 1496 213 94 0 0 chr3 119486359 119486391 -40113392 + (CCCG)n Simple_repeat Simple_repeat 4 35 0 7 1496 189 0 0 0 chr3 119487656 119487677 -40112106 + (GGGA)n Simple_repeat Simple_repeat 3 23 0 7 1496 1001 289 72 85 chr3 119488011 119488670 -40111113 + Tigger7 DNA MER2_type 1 687 -18 7 1496 199 328 0 15 chr3 119488694 119488759 -40111024 + MIRc SINE MIR 43 106 -162 7 1496 1091 239 37 110 chr3 119490017 119490326 -40109457 + MTE2a LTR MaLR 1 285 -94 7 1496 1456 214 77 11 chr3 119490326 119490675 -40109108 + ORR1D1 LTR MaLR 1 372 -2 7 1496 1091 239 37 110 chr3 119490675 119490774 -40109009 + MTE2a LTR MaLR 286 379 0 7 1496 3005 76 5 5 chr3 119490850 119491246 -40108537 - MTA_Mm LTR MaLR 0 396 1 7 1496 413 55 55 0 chr3 119491710 119491783 -40108000 + (CA)n Simple_repeat Simple_repeat 2 78 0 7 1496 521 270 20 87 chr3 119492056 119492251 -40107532 + B3A SINE B2 1 182 -16 7 1496 528 254 31 8 chr3 119492688 119492815 -40106968 - RSINE1 SINE B4 -24 141 12 7 1496 329 339 52 82 chr3 119492973 119493243 -40106540 + HAL1 LINE L1 2244 2505 -2 7 1496 195 42 0 0 chr3 119493760 119493784 -40105999 + (A)n Simple_repeat Simple_repeat 1 24 0 7 1496 776 222 28 0 chr3 119493785 119493961 -40105822 - Lx8 LINE L1 -974 6499 6319 7 1496 2897 282 23 21 chr3 119494026 119494899 -40104884 + Lx8 LINE L1 6597 7471 -2 7 1496 3105 166 41 20 chr3 119494983 119495988 -40103795 + Lx5 LINE L1 5444 6820 -230 7 1496 306 0 0 0 chr3 119495988 119496022 -40103761 + (CCTG)n Simple_repeat Simple_repeat 1 34 0 7 1496 2215 211 93 28 chr3 119496022 119496256 -40103527 + Lx5 LINE L1 6821 7049 -1 7 1496 316 308 51 0 chr3 119496348 119496426 -40103357 + RSINE1 SINE B4 62 143 -22 7 1496 405 0 0 0 chr3 119496434 119496479 -40103304 + (TAAA)n Simple_repeat Simple_repeat 2 46 0 7 1496 1252 249 82 9 chr3 119496564 119496892 -40102891 - ORR1D2 LTR MaLR -10 360 9 7 1496 377 67 33 0 chr3 119496972 119497032 -40102751 + (CAGA)n Simple_repeat Simple_repeat 1 62 0 7 1496 262 378 44 50 chr3 119497687 119498044 -40101739 + L2a LINE L2 2863 3224 -202 7 1496 246 32 0 0 chr3 119498327 119498358 -40101425 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 7 1496 743 327 104 19 chr3 119498884 119499249 -40100534 + L3 LINE CR1 4058 4453 -36 7 1496 1146 102 0 0 chr3 119499726 119499893 -40099890 + (TTC)n Simple_repeat Simple_repeat 2 168 0 7 1496 513 165 202 34 chr3 119500469 119500588 -40099195 + B1_Mur2 SINE Alu 4 142 -7 1 1496 201 167 0 27 chr3 119500664 119500701 -40099082 + C-rich Low_complexity Low_complexity 1 36 0 2 1496 480 35 0 0 chr3 119500845 119500903 -40098880 + (TG)n Simple_repeat Simple_repeat 1 58 0 3 1496 312 304 39 0 chr3 119500966 119501068 -40098715 - RMER1B Other Other -896 170 65 4 1496 776 285 71 71 chr3 119501163 119501446 -40098337 + ORR1E LTR MaLR 77 359 0 5 1496 21 0 0 0 chr3 119501570 119501591 -40098192 + AT_rich Low_complexity Low_complexity 1 21 0 6 1496 243 0 0 0 chr3 119502993 119503020 -40096763 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 7 1496 709 273 44 80 chr3 119503385 119503660 -40096123 - B4A SINE B4 -21 271 7 8 1496 198 0 0 0 chr3 119503673 119503695 -40096088 + (CCCCCA)n Simple_repeat Simple_repeat 2 23 0 9 1496 288 0 0 0 chr3 119504401 119504433 -40095350 + (CAAAC)n Simple_repeat Simple_repeat 2 33 0 1 1496 189 0 0 0 chr3 119504459 119504480 -40095303 + (CAAA)n Simple_repeat Simple_repeat 4 24 0 1 1496 486 178 15 99 chr3 119506420 119506551 -40093232 + MTB_Mm LTR MaLR 288 407 0 1 1496 1521 214 73 15 chr3 119506551 119506878 -40092905 + Lx6 LINE L1 7104 7449 -11 1 1496 252 265 0 14 chr3 119507184 119507253 -40092530 + tRNA-Ala-GCY_ tRNA tRNA 1 68 -7 1 1496 629 279 95 43 chr3 119507319 119507645 -40092138 + RLTR15 LTR ERVK 1 343 -16 1 1496 767 278 18 27 chr3 119507793 119508015 -40091768 - ID_B1 SINE B4 -2 222 3 1 1496 303 286 26 0 chr3 119508142 119508219 -40091564 + ID4 SINE ID 2 80 -3 1 1496 1187 57 0 7 chr3 119508385 119508527 -40091256 + B1_Mm SINE Alu 1 141 -6 1 1496 1523 256 36 24 chr3 119508554 119509022 -40090761 + Lx3C LINE L1 6503 6976 0 1 1496 426 39 0 0 chr3 119509022 119509074 -40090709 + (GGGA)n Simple_repeat Simple_repeat 1 52 0 2 1496 399 326 36 14 chr3 119509103 119509243 -40090540 + B4A SINE B4 6 148 -144 2 1496 230 315 41 0 chr3 119509375 119509448 -40090335 - ID4 SINE ID -3 80 5 2 1496 264 345 98 22 chr3 119509645 119509870 -40089913 + L4 LINE RTE 1217 1458 -571 2 1496 234 203 129 14 chr3 119510000 119510070 -40089713 + MER94 DNA AcHobo 57 134 0 2 1496 2682 76 22 3 chr3 119510166 119510524 -40089259 - L1_Mus3 LINE L1 -12 6626 6262 2 1496 643 273 79 44 chr3 119510525 119510728 -40089055 - MLT1A0 LTR MaLR -4 361 152 2 1496 597 275 148 10 chr3 119510932 119511134 -40088649 + RMER15 LTR ERVL 304 533 -42 2 1496 186 174 0 0 chr3 119511137 119511183 -40088600 + CT-rich Low_complexity Low_complexity 1 46 0 2 1496 288 70 0 0 chr3 119511189 119511232 -40088551 + (TCTG)n Simple_repeat Simple_repeat 2 44 0 2 1496 360 0 0 0 chr3 119511235 119511275 -40088508 + (TG)n Simple_repeat Simple_repeat 2 41 0 3 1496 21 36 0 0 chr3 119511432 119511460 -40088323 + AT_rich Low_complexity Low_complexity 1 28 0 3 1496 532 319 107 17 chr3 119512086 119512319 -40087464 + MLT1H LTR MaLR 40 293 -256 3 1496 241 226 0 19 chr3 119514839 119514893 -40084890 - B4 SINE B4 -209 83 31 3 1496 902 209 154 5 chr3 119515239 119515427 -40084356 - B3 SINE B2 0 216 1 3 1496 23 54 0 0 chr3 119515584 119515621 -40084162 + AT_rich Low_complexity Low_complexity 1 37 0 3 1496 196 336 135 7 chr3 119515638 119515779 -40084004 + L2c LINE L2 2718 2876 -543 3 1496 22 0 0 0 chr3 119516081 119516103 -40083680 + AT_rich Low_complexity Low_complexity 1 22 0 3 1496 224 305 75 19 chr3 119516413 119516520 -40083263 + L2c LINE L2 3274 3386 -1 3 1496 440 289 22 7 chr3 119517113 119517249 -40082534 - B1F SINE Alu 0 149 12 3 1496 231 36 0 0 chr3 119518184 119518212 -40081571 + (A)n Simple_repeat Simple_repeat 1 28 0 3 1496 198 103 0 0 chr3 119518599 119518628 -40081155 + (TG)n Simple_repeat Simple_repeat 1 29 0 4 1496 447 19 0 0 chr3 119518628 119518679 -40081104 + (GA)n Simple_repeat Simple_repeat 1 52 0 4 1496 35 54 0 0 chr3 119519008 119519064 -40080719 + AT_rich Low_complexity Low_complexity 1 56 0 4 1496 530 98 12 0 chr3 119519704 119519786 -40079997 + (TTTC)n Simple_repeat Simple_repeat 4 86 0 4 1496 592 343 56 24 chr3 119519921 119520172 -40079611 - LTR16B LTR ERVL -18 445 187 4 1496 330 256 137 44 chr3 119520503 119520707 -40079076 + L1MC1 LINE L1 6110 6332 -1 4 1496 393 292 22 30 chr3 119520914 119521048 -40078735 - B3 SINE B2 0 216 84 4 1496 1592 219 36 53 chr3 119522284 119522698 -40077085 - MTD LTR MaLR -12 407 1 4 1496 252 0 0 0 chr3 119523267 119523295 -40076488 + (TG)n Simple_repeat Simple_repeat 1 28 0 4 1496 370 343 41 14 chr3 119523299 119523444 -40076339 - RSINE1 SINE B4 -4 161 13 4 1496 892 190 151 20 chr3 119524399 119524598 -40075185 - URR1B DNA MER1_type 0 225 1 5 1496 2185 99 81 33 chr3 119524612 119524946 -40074837 + Lx LINE L1 6292 6641 -13 5 1496 1201 102 91 0 chr3 119525060 119525236 -40074547 - B2_Mm1a SINE B2 0 193 2 5 1496 238 274 74 74 chr3 119525551 119525673 -40074110 - L2c LINE L2 -40 3347 3226 5 1496 273 29 0 0 chr3 119525711 119525745 -40074038 + (CA)n Simple_repeat Simple_repeat 2 35 0 5 1496 3801 34 0 0 chr3 119525992 119526433 -40073350 + L1Md_F2 LINE L1 5145 5585 -298 5 1496 8865 39 0 0 chr3 119526434 119527429 -40072354 + L1Md_F2 LINE L1 5587 6581 -1 5 1496 309 287 147 71 chr3 119527563 119527689 -40072094 + MLT1A0 LTR MaLR 5 145 -220 5 1496 243 61 0 0 chr3 119527689 119527722 -40072061 + (CCA)n Simple_repeat Simple_repeat 1 33 0 5 1496 309 287 147 71 chr3 119527722 119527820 -40071963 + MLT1A0 LTR MaLR 146 246 -119 5 1496 291 321 129 57 chr3 119527987 119528312 -40071471 - L2c LINE L2 -470 2949 2617 5 1496 3265 152 56 26 chr3 119528312 119528880 -40070903 - RMER4B LTR ERVK 0 585 1 5 1496 291 321 129 57 chr3 119528880 119529066 -40070717 - L2c LINE L2 -803 2616 2402 5 1496 904 190 72 0 chr3 119530881 119531076 -40068707 - ORR1D1 LTR MaLR 0 374 166 5 1496 368 135 0 13 chr3 119531117 119531192 -40068591 + (GGA)n Simple_repeat Simple_repeat 1 74 0 6 1496 912 219 28 0 chr3 119531198 119531376 -40068407 - ORR1D1 LTR MaLR -191 183 1 5 1496 390 21 0 0 chr3 119532326 119532373 -40067410 + (TAGA)n Simple_repeat Simple_repeat 1 47 0 6 1496 2217 97 13 0 chr3 119532373 119532682 -40067101 - ORR1A2 LTR MaLR -12 315 3 6 1496 431 35 18 0 chr3 119532685 119532742 -40067041 + (TAGA)n Simple_repeat Simple_repeat 4 61 0 6 1496 288 0 0 0 chr3 119532852 119532884 -40066899 + (A)n Simple_repeat Simple_repeat 1 32 0 6 1496 351 320 135 43 chr3 119533257 119533420 -40066363 - RMER15 LTR ERVL -91 484 307 6 1496 654 104 0 0 chr3 119533761 119533857 -40065926 + (TG)n Simple_repeat Simple_repeat 2 97 0 6 1496 1416 193 258 19 chr3 119534002 119534429 -40065354 - RMER15 LTR ERVL -14 561 33 6 1496 3874 11 136 0 chr3 119534654 119535088 -40064695 + MT2_Mm LTR ERVL 1 493 0 6 23 48666 15 1 0 chr3 119535089 119540443 -40059340 + MERVL-int LTR ERVL 2 5360 -125 6 1497 364 191 46 35 chr3 119540443 119540530 -40059253 + ORR1A3-int LTR MaLR 553 640 -1323 6 1497 322 0 0 0 chr3 119540530 119540568 -40059215 + MERVL-int LTR ERVL 5448 5485 0 6 1497 4598 14 12 0 chr3 119540568 119541055 -40058728 + MT2_Mm LTR ERVL 1 493 0 6 1497 358 327 88 0 chr3 119541138 119541251 -40058532 - PB1 SINE Alu -3 124 2 7 1497 181 402 29 10 chr3 119541329 119541432 -40058351 - L2b LINE L2 0 3375 3271 7 1497 417 39 0 0 chr3 119542050 119542101 -40057682 + (TG)n Simple_repeat Simple_repeat 1 51 0 7 1497 798 252 13 75 chr3 119542179 119542406 -40057377 - ID_B1 SINE B4 -8 216 4 7 1497 1249 55 0 14 chr3 119543334 119543482 -40056301 - B1_Mus2 SINE Alu -1 146 1 7 1497 351 283 30 10 chr3 119544303 119544403 -40055380 - MTEa LTR MaLR -260 119 18 7 1497 1956 232 63 92 chr3 119544548 119545180 -40054603 + RLTR18 LTR ERVK 1 614 -2 7 1497 1379 212 152 3 chr3 119546776 119547098 -40052685 + ORR1D1 LTR MaLR 1 370 -4 7 1497 1175 268 39 35 chr3 119547278 119547560 -40052223 + B4A SINE B4 7 289 -3 7 1497 288 0 0 0 chr3 119547577 119547609 -40052174 + (CA)n Simple_repeat Simple_repeat 1 32 0 7 1497 282 270 0 13 chr3 119548084 119548159 -40051624 + (TG)n Simple_repeat Simple_repeat 1 74 0 8 1497 496 319 15 31 chr3 119549543 119549571 -40050212 - B3A SINE B2 -22 194 167 8 1497 258 32 0 0 chr3 119549571 119549602 -40050181 + (TG)n Simple_repeat Simple_repeat 1 31 0 8 1497 496 315 12 29 chr3 119549602 119549763 -40050020 - B3A SINE B2 -32 166 8 8 1497 261 75 0 0 chr3 119549805 119549845 -40049938 + (CAGAGA)n Simple_repeat Simple_repeat 4 43 0 8 1497 23 0 0 0 chr3 119549867 119549890 -40049893 + AT_rich Low_complexity Low_complexity 1 23 0 8 1497 212 305 0 35 chr3 119550424 119550509 -40049274 + (TATG)n Simple_repeat Simple_repeat 2 83 0 8 1497 709 225 14 14 chr3 119550558 119550702 -40049081 - B1_Mur1 SINE Alu -5 144 1 8 1497 534 70 0 0 chr3 119551184 119551255 -40048528 + (TCCC)n Simple_repeat Simple_repeat 4 74 0 8 1497 617 231 25 84 chr3 119551273 119551476 -40048307 - B3 SINE B2 -24 192 2 8 1497 1175 200 101 40 chr3 119551561 119551858 -40047925 - RLTR46 LTR ERVK -5 315 1 8 1497 326 294 0 0 chr3 119552384 119552452 -40047331 + RSINE1 SINE B4 36 103 -62 9 1497 396 0 0 0 chr3 119552463 119552507 -40047276 + (CA)n Simple_repeat Simple_repeat 1 44 0 9 1497 27 29 0 0 chr3 119553656 119553690 -40046093 + AT_rich Low_complexity Low_complexity 1 34 0 9 1497 228 295 38 83 chr3 119553953 119554086 -40045697 + MER45C DNA Tip100 13 139 -814 9 1497 458 235 199 35 chr3 119554054 119554195 -40045588 - B3 SINE B2 -1 215 52 9 1497 239 233 84 0 chr3 119554986 119555046 -40044737 - L2a LINE L2 -17 3409 3302 9 1497 287 260 87 0 chr3 119555472 119555574 -40044209 + PB1D7 SINE Alu 1 110 -10 9 1497 21 0 0 0 chr3 119556053 119556074 -40043709 + AT_rich Low_complexity Low_complexity 1 21 0 9 1497 378 333 7 7 chr3 119556122 119556258 -40043525 + Lx7 LINE L1 7123 7258 -438 9 1497 342 265 113 12 chr3 119556296 119556464 -40043319 + Lx7 LINE L1 7507 7691 -5 9 1497 33 56 0 0 chr3 119556468 119556522 -40043261 + AT_rich Low_complexity Low_complexity 1 54 0 9 1497 315 0 0 0 chr3 119556530 119556565 -40043218 + (TG)n Simple_repeat Simple_repeat 2 36 0 1 1497 419 309 86 29 chr3 119556576 119556716 -40043067 - RSINE1 SINE B4 -17 148 1 1 1497 450 290 84 43 chr3 119556774 119556936 -40042847 + B3A SINE B2 2 170 -46 1 1497 270 238 99 12 chr3 119557018 119557099 -40042684 - MLT2B4 LTR ERVL -468 88 1 1 1497 851 309 44 23 chr3 119557214 119557601 -40042182 + L1M5 LINE L1 4631 5025 -1121 1 1497 711 243 20 14 chr3 119557618 119557764 -40042019 + B3A SINE B2 7 153 -45 1 1497 6460 104 32 44 chr3 119557813 119559168 -40040615 - Lx LINE L1 -5 6649 5330 1 1497 1737 142 6 3 chr3 119559168 119559479 -40040304 + Lx LINE L1 5042 5353 -530 1 1497 180 0 0 0 chr3 119559590 119559610 -40040173 + (GA)n Simple_repeat Simple_repeat 1 20 0 1 1497 265 299 32 26 chr3 119559620 119559832 -40039951 + L1M5 LINE L1 5153 5371 -793 1 1497 231 177 0 0 chr3 119559860 119559922 -40039861 + (TA)n Simple_repeat Simple_repeat 2 63 0 1 1497 300 333 24 6 chr3 119560236 119560405 -40039378 + L1M5 LINE L1 5581 5752 -410 1 1497 537 64 0 0 chr3 119560609 119560687 -40039096 + (TCTA)n Simple_repeat Simple_repeat 1 78 0 1 1497 217 307 8 34 chr3 119560877 119560995 -40038788 + GA-rich Low_complexity Low_complexity 6 120 0 1 1497 484 258 73 29 chr3 119561445 119561581 -40038202 + RSINE1 SINE B4 24 165 0 1 1497 358 69 69 10 chr3 119561605 119561707 -40038076 + (TA)n Simple_repeat Simple_repeat 2 109 0 1 1497 370 279 5 103 chr3 119561807 119561991 -40037792 + MLT2B1 LTR ERVL 402 567 0 1 1497 37 0 0 0 chr3 119562270 119562307 -40037476 + AT_rich Low_complexity Low_complexity 1 37 0 1 1497 245 98 0 24 chr3 119562604 119562646 -40037137 + (TTTG)n Simple_repeat Simple_repeat 1 41 0 1 1497 588 277 43 0 chr3 119563521 119563662 -40036121 - RSINE1 SINE B4 -16 149 3 1 1497 954 262 63 31 chr3 119563863 119564214 -40035569 - Tigger7 DNA MER2_type -1 2490 2129 1 1497 583 337 80 20 chr3 119564194 119564494 -40035289 - Tigger7 DNA MER2_type -2168 323 6 1 1497 447 35 0 0 chr3 119565774 119565831 -40033952 + (TG)n Simple_repeat Simple_repeat 1 57 0 1 1497 330 45 0 0 chr3 119565831 119565874 -40033909 + (GA)n Simple_repeat Simple_repeat 1 44 0 1 1497 289 229 147 160 chr3 119567546 119567702 -40032081 - B4A SINE B4 -112 180 27 1 1497 2218 114 6 9 chr3 119567956 119568283 -40031500 - ORR1A3 LTR MaLR 0 326 1 1 1497 236 231 193 9 chr3 119568736 119568845 -40030938 + RMER15 LTR ERVL 404 532 -43 1 1497 423 0 0 0 chr3 119569696 119569743 -40030040 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 1497 219 317 73 46 chr3 119569743 119569852 -40029931 - MIRc SINE MIR -124 144 33 1 1497 195 42 0 0 chr3 119571232 119571256 -40028527 + (TA)n Simple_repeat Simple_repeat 1 24 0 1 1497 401 165 38 0 chr3 119571259 119571338 -40028445 - Lx8 LINE L1 -2 7471 7390 1 1497 572 242 83 0 chr3 119571401 119571533 -40028250 - B1_Mur2 SINE Alu -6 143 1 1 1497 420 20 0 0 chr3 119572813 119572862 -40026921 + (TC)n Simple_repeat Simple_repeat 2 50 0 1 1497 300 238 24 24 chr3 119573752 119573834 -40025949 + ID4_ SINE ID 2 83 0 1 1497 1091 283 14 35 chr3 119574203 119574489 -40025294 - B4A SINE B4 0 292 13 1 1497 873 54 0 0 chr3 119574582 119574693 -40025090 + (TTTC)n Simple_repeat Simple_repeat 3 113 0 1 1497 246 32 0 0 chr3 119574777 119574808 -40024975 + (TCTG)n Simple_repeat Simple_repeat 2 32 0 1 1497 207 0 0 0 chr3 119574828 119574851 -40024932 + (TTCC)n Simple_repeat Simple_repeat 3 25 0 1 1497 612 315 143 63 chr3 119574931 119575280 -40024503 + MTEa LTR MaLR 1 377 -2 1 1497 319 271 54 27 chr3 119575391 119575539 -40024244 + L1MB5 LINE L1 5860 6011 -163 1 1497 1926 115 45 13 chr3 119575595 119575904 -40023879 - ORR1A2 LTR MaLR -8 319 1 1 1497 207 186 0 0 chr3 119576056 119576099 -40023684 + GA-rich Low_complexity Low_complexity 3 45 0 1 1497 1758 170 64 80 chr3 119576277 119576639 -40023144 - ORR1C2 LTR MaLR 0 384 25 1 1497 1546 131 118 49 chr3 119576639 119576944 -40022839 + ORR1A3 LTR MaLR 1 326 0 1 1497 1758 170 64 80 chr3 119576944 119576971 -40022812 - ORR1C2 LTR MaLR -360 24 1 1 1497 1249 222 85 21 chr3 119577015 119577355 -40022428 - Lx9 LINE L1 -692 6952 6591 1 1497 21 0 0 0 chr3 119577844 119577865 -40021918 + AT_rich Low_complexity Low_complexity 1 21 0 1 1497 191 167 0 23 chr3 119578019 119578062 -40021721 + T-rich Low_complexity Low_complexity 3 44 0 1 1497 270 0 0 0 chr3 119578572 119578602 -40021181 + (TTTTA)n Simple_repeat Simple_repeat 2 31 0 1 1497 732 273 80 77 chr3 119578689 119578975 -40020808 - B4A SINE B4 -4 288 2 1 1497 214 384 28 35 chr3 119579102 119579245 -40020538 + MER5A DNA MER1_type 47 188 -1 1 1497 3236 286 61 38 chr3 119579633 119580856 -40018927 - Lx8 LINE L1 -8 7465 6215 1 1497 708 352 79 19 chr3 119580990 119581369 -40018414 + MER57E2 LTR ERV1 1 402 0 1 1497 269 308 151 16 chr3 119581387 119581691 -40018092 + MER31-int LTR ERV1 775 1119 -3817 1 1497 284 312 45 97 chr3 119582043 119582373 -40017410 + MER31-int LTR ERV1 1747 2059 -3297 1 1497 1443 33 48 21 chr3 119582896 119583083 -40016700 + B2_Mm1a SINE B2 2 193 0 1 1497 659 298 96 46 chr3 119583354 119584136 -40015647 + MER31-int LTR ERV1 2463 3283 -1653 1 1497 707 288 124 23 chr3 119584252 119584551 -40015232 + MER31B LTR ERV1 133 461 -5 1 1497 629 244 0 31 chr3 119584594 119584721 -40015062 + RSINE1 SINE B4 8 130 -35 1 1497 1009 51 39 0 chr3 119584761 119584917 -40014866 + (TAGA)n Simple_repeat Simple_repeat 1 162 0 1 1497 449 152 89 0 chr3 119585675 119585754 -40014029 - PB1D9 SINE Alu 0 120 35 1 1497 976 188 9 68 chr3 119585775 119585997 -40013786 - B3 SINE B2 -4 212 4 1 1497 351 113 0 0 chr3 119586420 119586473 -40013310 + (TTTA)n Simple_repeat Simple_repeat 2 54 0 1 1497 235 316 13 0 chr3 119586474 119586553 -40013230 + (TG)n Simple_repeat Simple_repeat 1 80 0 1 1497 1105 276 10 17 chr3 119586557 119586845 -40012938 - B4 SINE B4 -2 290 5 1 1497 240 111 48 0 chr3 119587090 119587153 -40012630 + A-rich Low_complexity Low_complexity 4 69 0 1 1497 233 211 13 26 chr3 119587721 119587799 -40011984 + (TA)n Simple_repeat Simple_repeat 1 77 0 1 1497 418 187 43 21 chr3 119587816 119587909 -40011874 - RSINE1 SINE B4 -60 105 11 1 1497 260 303 39 26 chr3 119588135 119588213 -40011570 - ID SINE ID -145 79 1 1 1497 261 75 0 0 chr3 119588327 119588367 -40011416 + (TG)n Simple_repeat Simple_repeat 2 41 0 1 1497 335 358 27 7 chr3 119588429 119588578 -40011205 + RSINE1 SINE B4 2 153 -12 1 1497 1072 197 281 3 chr3 119588788 119589096 -40010687 - ORR1B1 LTR MaLR 0 394 1 1 1497 260 313 101 35 chr3 119589364 119589533 -40010250 - MIRb SINE MIR -8 260 81 1 1497 706 273 10 25 chr3 119589545 119589744 -40010039 + B3A SINE B2 3 198 0 1 1497 365 350 25 8 chr3 119589892 119590013 -40009770 + RSINE1 SINE B4 11 133 -32 1 1497 192 77 0 0 chr3 119590015 119590041 -40009742 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 1 1497 1222 225 216 50 chr3 119590920 119591378 -40008405 - RLTR20C LTR ERVK 0 534 1 1 1497 885 256 5 10 chr3 119591475 119591680 -40008103 + B3 SINE B2 3 206 -10 1 1497 283 326 20 40 chr3 119592491 119592590 -40007193 + PB1 SINE Alu 29 125 -2 1 1497 186 150 0 0 chr3 119592591 119592631 -40007152 + (CAAAAA)n Simple_repeat Simple_repeat 2 41 0 1 1497 495 0 0 0 chr3 119593263 119593318 -40006465 + (TTA)n Simple_repeat Simple_repeat 3 57 0 1 1497 2983 186 25 64 chr3 119593627 119594344 -40005439 + RMER1B Other Other 378 1066 0 1 1497 672 171 136 16 chr3 119594339 119594428 -40005355 - Lx7 LINE L1 -122 7574 7464 1 1497 180 0 0 0 chr3 119594428 119594448 -40005335 + (CA)n Simple_repeat Simple_repeat 1 20 0 1 1497 672 186 113 14 chr3 119594448 119594561 -40005222 - Lx7 LINE L1 -233 7463 7370 1 1497 225 200 17 0 chr3 119594651 119594711 -40005072 + (CAAA)n Simple_repeat Simple_repeat 4 64 0 1 1497 597 314 87 35 chr3 119595327 119595508 -40004275 + B4A SINE B4 26 215 -77 1 1497 311 0 0 25 chr3 119595508 119595548 -40004235 + (CAAAA)n Simple_repeat Simple_repeat 5 43 0 1 1497 597 314 87 35 chr3 119595548 119595620 -40004163 + B4A SINE B4 216 291 -1 1 1497 180 200 0 0 chr3 119595626 119595666 -40004117 + (CA)n Simple_repeat Simple_repeat 1 40 0 1 1497 265 273 76 0 chr3 119597776 119597842 -40001941 - L2c LINE L2 -8 3379 3309 1 1497 276 349 33 27 chr3 119599273 119599423 -40000360 - LTR77 LTR ERV1 -34 588 438 1 1497 927 277 17 20 chr3 119599538 119599833 -39999950 + RLTR15 LTR ERVK 1 294 -65 1 1497 405 0 0 0 chr3 119600125 119600170 -39999613 + (TA)n Simple_repeat Simple_repeat 2 46 0 1 1497 210 118 0 0 chr3 119600439 119600473 -39999310 + (CAAA)n Simple_repeat Simple_repeat 3 36 0 1 1497 339 318 153 34 chr3 119601797 119601973 -39997810 + ORR1E LTR MaLR 1 197 -162 1 1497 731 170 20 72 chr3 119602035 119602075 -39997708 + URR1B DNA MER1_type 1 40 -185 1 1497 2057 155 25 52 chr3 119602075 119602476 -39997307 - ORR1B1 LTR MaLR 0 394 5 1 1497 731 170 20 72 chr3 119602476 119602587 -39997196 + URR1B DNA MER1_type 41 144 -81 1 1497 7987 45 4 14 chr3 119602587 119603652 -39996131 + L1Md_F2 LINE L1 4533 5586 -297 1 1497 8216 42 1 1 chr3 119603652 119604648 -39995135 + L1Md_F2 LINE L1 5587 6582 0 1 1497 448 191 10 31 chr3 119604648 119604745 -39995038 + URR1B DNA MER1_type 131 225 0 1 1497 238 288 0 14 chr3 119605063 119605137 -39994646 + ID4_ SINE ID 4 76 -7 1 1497 226 183 48 48 chr3 119605352 119605415 -39994368 - MTB_Mm LTR MaLR 0 374 312 1 1497 180 0 0 0 chr3 119605430 119605450 -39994333 + (CAA)n Simple_repeat Simple_repeat 2 21 0 1 1497 2160 129 30 36 chr3 119605450 119605813 -39993970 - MTB_Mm LTR MaLR -46 361 1 1 1497 1041 257 45 4 chr3 119605840 119606082 -39993701 - ORR1D2 LTR MaLR -118 252 1 1 1497 1719 143 144 15 chr3 119606120 119606460 -39993323 + ORR1B1 LTR MaLR 11 394 0 1 1497 189 0 0 0 chr3 119606464 119606485 -39993298 + (GGGTG)n Simple_repeat Simple_repeat 3 23 0 1 1497 468 0 0 0 chr3 119607120 119607172 -39992611 + (CA)n Simple_repeat Simple_repeat 1 52 0 1 1497 480 231 0 36 chr3 119607221 119607333 -39992450 - PB1D10 SINE Alu 0 117 10 1 1497 332 353 37 22 chr3 119607245 119607381 -39992402 - ID_B1 SINE B4 -48 176 39 1 1497 414 0 0 0 chr3 119607710 119607756 -39992027 + (CA)n Simple_repeat Simple_repeat 2 47 0 1 1497 888 118 0 0 chr3 119607757 119607893 -39991890 + (TA)n Simple_repeat Simple_repeat 1 136 0 1 1497 24 0 0 0 chr3 119608983 119609007 -39990776 + AT_rich Low_complexity Low_complexity 1 24 0 2 1497 191 325 99 65 chr3 119609724 119609925 -39989858 - MIRb SINE MIR -55 213 6 2 1497 1302 228 48 60 chr3 119610148 119610480 -39989303 + MTE2a LTR MaLR 52 379 0 2 1497 599 71 12 0 chr3 119610509 119610594 -39989189 + (TCTA)n Simple_repeat Simple_repeat 1 86 0 2 1497 464 254 103 0 chr3 119610595 119610721 -39989062 - B1_Mur2 SINE Alu -8 141 3 2 1497 838 306 30 8 chr3 119610969 119611236 -39988547 - B4A SINE B4 -16 276 4 2 1497 425 299 35 66 chr3 119611809 119612006 -39987777 + B3A SINE B2 8 198 0 2 1497 3091 75 17 5 chr3 119612690 119613104 -39986679 - Lx3B LINE L1 -173 6800 6382 2 1497 296 310 102 29 chr3 119613342 119613548 -39986235 + RLTR11A2 LTR ERVK 280 500 -27 2 1497 920 223 168 24 chr3 119613579 119613877 -39985906 + Lx7 LINE L1 7356 7696 0 2 1497 844 307 128 99 chr3 119613977 119614643 -39985140 - MER21B LTR ERV1 -79 784 100 2 1497 296 271 7 79 chr3 119614806 119614958 -39984825 - MLT1A1 LTR MaLR 0 408 268 2 1497 435 19 0 0 chr3 119614980 119615032 -39984751 + (TG)n Simple_repeat Simple_repeat 2 53 0 2 1497 271 341 104 37 chr3 119615544 119615678 -39984105 + B1F SINE Alu 1 143 -6 2 1497 180 0 0 0 chr3 119615702 119615722 -39984061 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 2 1497 1057 96 0 22 chr3 119615864 119616002 -39983781 - B1_Mus1 SINE Alu -13 135 1 2 1497 383 320 58 81 chr3 119616687 119617034 -39982749 + L1MEd LINE L1 594 932 -5187 2 1497 1083 287 60 17 chr3 119617057 119617404 -39982379 - ORR1D2 LTR MaLR -7 363 2 2 1497 760 205 61 38 chr3 119617601 119617820 -39981963 - MT2A LTR ERVL -4 529 258 2 1497 514 272 101 43 chr3 119619061 119619249 -39980534 + RMER30 DNA MER1_type 2 200 -2 2 1497 827 264 11 11 chr3 119619293 119619469 -39980314 + B3 SINE B2 29 204 -12 2 1497 276 286 128 48 chr3 119619499 119619624 -39980159 + MIR SINE MIR 128 262 0 2 1497 544 276 47 16 chr3 119619830 119619959 -39979824 - ETnERV2-int LTR ERVK -204 7202 7070 2 1497 237 216 73 64 chr3 119620608 119620717 -39979066 + LTR85a LTR Gypsy? 281 390 -312 2 1497 191 189 19 0 chr3 119621158 119621211 -39978572 + (TCTA)n Simple_repeat Simple_repeat 3 56 0 2 1497 2122 156 74 3 chr3 119622364 119622717 -39977066 - ORR1C1 LTR MaLR 0 378 1 2 1497 228 100 0 0 chr3 119622747 119622787 -39976996 + (TTAA)n Simple_repeat Simple_repeat 1 40 0 2 1497 1312 306 30 19 chr3 119622804 119623479 -39976304 - Lx5 LINE L1 -81 6969 6169 2 1497 253 221 157 41 chr3 119623665 119623776 -39976007 + PB1 SINE Alu 39 147 -2 2 1497 297 259 12 47 chr3 119624502 119624587 -39975196 + ORR1E LTR MaLR 1 82 -277 2 1497 1556 85 75 0 chr3 119624589 119624801 -39974982 + L1_Mus1 LINE L1 6340 6567 0 2 1497 234 235 20 0 chr3 119625061 119625112 -39974671 + MTE2a LTR MaLR 288 339 -40 2 1497 23 33 0 0 chr3 119625403 119625433 -39974350 + AT_rich Low_complexity Low_complexity 1 30 0 2 1497 739 246 35 18 chr3 119625447 119625617 -39974166 - B3A SINE B2 -24 174 2 2 1497 252 305 47 38 chr3 119626063 119626274 -39973509 - L1M5 LINE L1 -728 5512 5300 2 1497 991 221 75 10 chr3 119626459 119626660 -39973123 - B3 SINE B2 -1 215 2 2 1497 318 330 0 55 chr3 119626886 119626995 -39972788 - Tigger5 DNA MER2_type -2162 244 142 2 1497 180 111 0 0 chr3 119627871 119627898 -39971885 + (G)n Simple_repeat Simple_repeat 1 27 0 2 1497 426 20 0 0 chr3 119628833 119628884 -39970899 + (TC)n Simple_repeat Simple_repeat 2 52 0 2 1497 1160 249 47 41 chr3 119630238 119630582 -39969201 + ORR1E LTR MaLR 1 346 -13 2 1497 3273 77 75 30 chr3 119631930 119632398 -39967385 + Lx2 LINE L1 6509 6997 0 2 1497 1482 232 76 49 chr3 119632503 119632742 -39967041 + MTD LTR MaLR 1 253 -166 2 1497 875 174 212 0 chr3 119632742 119632926 -39966857 - URR1B DNA MER1_type -1 224 2 2 1497 1482 232 76 49 chr3 119632926 119633094 -39966689 + MTD LTR MaLR 254 419 0 2 1497 5198 72 82 7 chr3 119634438 119635121 -39964662 - L1_Mus3 LINE L1 0 6638 5905 2 1497 228 35 0 0 chr3 119637479 119637508 -39962275 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2 1497 1136 80 7 0 chr3 119637508 119637645 -39962138 - B1_Mus1 SINE Alu -9 139 2 2 1497 243 0 0 0 chr3 119637747 119637774 -39962009 + (GA)n Simple_repeat Simple_repeat 2 28 0 2 1497 783 179 225 6 chr3 119637986 119638155 -39961628 + B3 SINE B2 1 206 -10 2 1497 252 86 0 0 chr3 119638155 119638190 -39961593 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 2 1497 340 137 0 0 chr3 119638525 119638576 -39961207 + RSINE1 SINE B4 81 131 -34 2 1497 1212 75 0 0 chr3 119639074 119639221 -39960562 + B1_Mus1 SINE Alu 2 148 0 2 1497 405 0 0 0 chr3 119639852 119639897 -39959886 + (TG)n Simple_repeat Simple_repeat 2 46 0 2 1497 230 330 130 21 chr3 119639976 119640168 -39959615 + MIRb SINE MIR 35 247 -21 2 1497 257 320 13 0 chr3 119640193 119640268 -39959515 - MIR SINE MIR -110 152 77 2 1497 228 289 83 38 chr3 119640541 119640594 -39959189 + MIRb SINE MIR 107 158 -110 2 1497 3658 109 112 31 chr3 119640594 119641150 -39958633 - MT2B LTR ERVL 0 601 1 2 1497 228 289 83 38 chr3 119641150 119641229 -39958554 + MIRb SINE MIR 159 245 -23 2 1497 22 0 0 0 chr3 119642179 119642201 -39957582 + AT_rich Low_complexity Low_complexity 1 22 0 2 1497 180 0 0 0 chr3 119642777 119642797 -39956986 + (TA)n Simple_repeat Simple_repeat 2 21 0 2 1497 28 48 0 0 chr3 119643705 119643747 -39956036 + AT_rich Low_complexity Low_complexity 1 42 0 2 1497 432 0 0 0 chr3 119643997 119644045 -39955738 + (TG)n Simple_repeat Simple_repeat 1 48 0 2 1497 225 341 61 0 chr3 119644665 119644747 -39955036 + L2a LINE L2 3327 3413 -13 2 1497 352 174 14 28 chr3 119645178 119645249 -39954534 - MT2A LTR ERVL -402 131 62 2 1497 369 212 0 0 chr3 119645187 119645253 -39954530 - MTE2b LTR MaLR -256 123 58 2 1497 389 236 53 11 chr3 119645253 119645347 -39954436 - MTE2b LTR MaLR -281 98 1 2 1497 191 250 25 0 chr3 119645705 119645745 -39954038 - L2c LINE L2 -76 3311 3271 2 1497 315 49 0 0 chr3 119645969 119646010 -39953773 + (ATTG)n Simple_repeat Simple_repeat 2 42 0 2 1497 1346 108 0 58 chr3 119646244 119646438 -39953345 + B2_Mm2 SINE B2 1 185 -10 2 1497 225 0 0 0 chr3 119646438 119646463 -39953320 + (GGAA)n Simple_repeat Simple_repeat 3 27 0 2 1497 1346 108 0 58 chr3 119646463 119646474 -39953309 + B2_Mm2 SINE B2 186 194 -1 2 1497 593 289 59 41 chr3 119646669 119646815 -39952968 - ID_B1 SINE B4 0 224 75 2 1497 1062 141 167 30 chr3 119646815 119647013 -39952770 + URR1B DNA MER1_type 1 225 0 2 1497 593 289 59 41 chr3 119647013 119647086 -39952697 - ID SINE ID -150 74 2 2 1497 204 216 0 0 chr3 119648620 119648671 -39951112 + T-rich Low_complexity Low_complexity 1 51 0 2 1497 1206 55 7 7 chr3 119648671 119648819 -39950964 - B1_Mus1 SINE Alu 0 148 1 2 1497 1562 99 43 72 chr3 119649312 119649616 -39950167 - RLTR10A LTR ERVK 0 411 117 2 1497 188 402 41 0 chr3 119650404 119650526 -39949257 + L2b LINE L2 3247 3373 -2 2 1497 471 48 0 0 chr3 119652292 119652354 -39947429 + (CA)n Simple_repeat Simple_repeat 1 62 0 2 1497 211 267 0 0 chr3 119652756 119652801 -39946982 + GA-rich Low_complexity Low_complexity 3 47 0 2 1497 216 0 0 0 chr3 119652924 119652948 -39946835 + (T)n Simple_repeat Simple_repeat 1 24 0 2 1497 188 372 123 35 chr3 119655123 119655293 -39944490 - MIR3 SINE MIR -6 202 18 2 1497 226 250 35 41 chr3 119655904 119656075 -39943708 + (TTATA)n Simple_repeat Simple_repeat 5 174 0 2 1497 1399 264 52 14 chr3 119656196 119656561 -39943222 - MTE2a LTR MaLR 0 379 1 2 1497 474 65 0 0 chr3 119656662 119656724 -39943059 + (GAAAA)n Simple_repeat Simple_repeat 4 65 0 2 1497 934 294 10 62 chr3 119657717 119658025 -39941758 + B4A SINE B4 1 292 0 2 1497 365 109 16 0 chr3 119658363 119658427 -39941356 + (TG)n Simple_repeat Simple_repeat 2 66 0 2 1497 418 228 303 39 chr3 119659784 119659939 -39939844 + B3A SINE B2 1 196 -2 2 1497 405 0 0 0 chr3 119660882 119660927 -39938856 + (CA)n Simple_repeat Simple_repeat 2 46 0 2 1497 619 244 84 0 chr3 119661039 119661170 -39938613 - B1_Mur1 SINE Alu 0 149 8 2 1497 462 267 64 64 chr3 119661045 119661185 -39938598 - ID_B1 SINE B4 -6 218 79 2 1497 329 43 0 21 chr3 119661197 119661245 -39938538 + (TG)n Simple_repeat Simple_repeat 1 47 0 2 1497 588 318 0 0 chr3 119661249 119661397 -39938386 - B3A SINE B2 -50 148 1 2 1497 771 303 50 33 chr3 119661397 119661626 -39938157 - B4A SINE B4 -59 233 1 2 1497 193 365 0 26 chr3 119662625 119662701 -39937082 + MIR SINE MIR 40 113 -149 2 1497 286 288 49 12 chr3 119663882 119663963 -39935820 - RSINE1 SINE B4 -43 122 39 2 1497 536 120 10 0 chr3 119663986 119664086 -39935697 + (TCTA)n Simple_repeat Simple_repeat 1 101 0 2 1497 321 312 121 0 chr3 119664175 119664316 -39935467 - B4A SINE B4 -134 158 1 2 1497 447 73 0 0 chr3 119664928 119664996 -39934787 + (GA)n Simple_repeat Simple_repeat 1 68 0 2 1497 207 364 16 0 chr3 119666102 119666229 -39933554 - MIRb SINE MIR 0 262 132 2 1497 1299 196 108 23 chr3 119667408 119667752 -39932031 - ORR1D1 LTR MaLR 0 374 2 2 1497 21 0 0 0 chr3 119667833 119667854 -39931929 + AT_rich Low_complexity Low_complexity 1 21 0 2 1497 344 193 0 24 chr3 119668535 119668620 -39931163 + CT-rich Low_complexity Low_complexity 3 85 0 2 1498 784 279 53 9 chr3 119669388 119669710 -39930073 + L1M5 LINE L1 5257 5592 -602 2 1498 628 294 69 18 chr3 119670411 119670629 -39929154 - RMER15 LTR ERVL -14 561 333 2 1498 507 134 0 0 chr3 119670759 119670841 -39928942 + (TCC)n Simple_repeat Simple_repeat 3 84 0 3 1498 1206 62 0 0 chr3 119671494 119671640 -39928143 - B1_Mus1 SINE Alu -1 147 2 3 1498 378 0 0 0 chr3 119672541 119672583 -39927200 + (CA)n Simple_repeat Simple_repeat 1 42 0 3 1498 404 292 39 26 chr3 119672933 119673165 -39926618 + L1M2 LINE L1 2803 3037 -3103 3 1498 488 248 0 0 chr3 119673174 119673279 -39926504 + B1_Mur1 SINE Alu 41 145 -4 3 1498 641 289 114 31 chr3 119673388 119674194 -39925589 + L1M2 LINE L1 3029 3901 -2242 3 1498 1171 43 0 0 chr3 119674244 119674382 -39925401 + B1_Mus2 SINE Alu 2 139 -8 3 1498 282 29 0 0 chr3 119674382 119674417 -39925366 + (CAA)n Simple_repeat Simple_repeat 2 36 0 3 1498 485 311 26 37 chr3 119674528 119674893 -39924890 + L1_Mur3 LINE L1 4245 4591 -1289 3 1498 228 192 127 13 chr3 119675080 119675159 -39924624 + L1_Mur3 LINE L1 4778 4865 -1012 3 1498 275 268 7 99 chr3 119675292 119675433 -39924350 + L1_Rod LINE L1 2839 2966 -2881 3 1498 703 294 2 19 chr3 119675475 119675749 -39924034 + L1MA5 LINE L1 5693 5962 -209 3 1498 768 316 83 0 chr3 119676159 119676447 -39923336 - MTE2a LTR MaLR -67 312 1 3 1498 250 372 0 0 chr3 119676911 119676997 -39922786 + Cheshire DNA MER1_type 195 280 -2140 3 1498 198 192 0 0 chr3 119677156 119677208 -39922575 + GA-rich Low_complexity Low_complexity 3 54 0 3 1498 5399 155 33 4 chr3 119677250 119678155 -39921628 + Lx4A LINE L1 6126 7056 -2 3 1498 1227 48 0 0 chr3 119678173 119678320 -39921463 + B1_Mus1 SINE Alu 1 147 -1 3 1498 636 232 108 28 chr3 119679780 119680089 -39919694 - ORR1D1 LTR MaLR 0 379 1 3 1498 36153 42 1 3 chr3 119680590 119686899 -39912884 - L1Md_T LINE L1 0 6585 188 3 1498 362 281 0 0 chr3 119687284 119687366 -39912417 - ID SINE ID -141 83 2 3 1498 2368 53 0 0 chr3 119687715 119688019 -39911764 + L1Md_F2 LINE L1 5283 5586 -297 3 1498 8472 31 0 0 chr3 119688020 119689001 -39910782 + L1Md_F2 LINE L1 5588 6568 -14 3 1498 209 224 20 0 chr3 119689804 119689853 -39909930 + (TG)n Simple_repeat Simple_repeat 1 50 0 3 1498 766 284 42 46 chr3 119689859 119690143 -39909640 - B4 SINE B4 -8 284 2 3 1498 286 312 140 0 chr3 119690371 119690464 -39909319 - L2a LINE L2 0 3426 3321 3 1498 315 266 37 45 chr3 119691591 119691725 -39908058 - RLTR42-int LTR ERVK -4122 1400 1268 3 1498 24 32 0 0 chr3 119692247 119692278 -39907505 + AT_rich Low_complexity Low_complexity 1 31 0 3 1498 21 36 0 0 chr3 119692397 119692425 -39907358 + AT_rich Low_complexity Low_complexity 1 28 0 3 1498 222 262 0 0 chr3 119692981 119693065 -39906718 + T-rich Low_complexity Low_complexity 1 84 0 3 1498 2376 175 7 2 chr3 119693679 119694098 -39905685 - MTC LTR MaLR 0 421 1 3 1498 731 271 0 0 chr3 119695316 119695471 -39904312 - B3 SINE B2 -61 155 1 3 1498 873 250 107 20 chr3 119695750 119696003 -39903780 + MTE2a LTR MaLR 1 275 -104 3 1498 648 0 0 0 chr3 119696163 119696235 -39903548 + (TC)n Simple_repeat Simple_repeat 1 72 0 3 1498 601 177 202 0 chr3 119696582 119696706 -39903077 - B1_Mur2 SINE Alu 0 149 1 3 1498 426 316 29 6 chr3 119696726 119696898 -39902885 + CT-rich Low_complexity Low_complexity 4 179 0 3 1498 959 56 14 7 chr3 119697284 119697429 -39902354 - Lx2 LINE L1 -1 6996 6851 3 1498 254 407 35 0 chr3 119698246 119698362 -39901421 - MIR SINE MIR -60 148 32 3 1498 482 31 16 0 chr3 119699261 119699325 -39900458 + (TG)n Simple_repeat Simple_repeat 2 66 0 3 1498 341 297 90 6 chr3 119700312 119700478 -39899305 - MIRc SINE MIR -49 219 40 3 1498 419 313 94 15 chr3 119700749 119700950 -39898833 + Lx8 LINE L1 6960 7176 -297 3 1498 229 282 137 68 chr3 119701568 119701861 -39897922 - L2c LINE L2 -157 3230 2918 3 1498 181 330 52 0 chr3 119702457 119702554 -39897229 + L4 LINE RTE 1652 1753 -276 3 1498 266 286 16 0 chr3 119703217 119703280 -39896503 + ID4 SINE ID 14 77 -6 3 1498 261 0 0 0 chr3 119704330 119704359 -39895424 + (TG)n Simple_repeat Simple_repeat 2 30 0 3 1498 616 280 59 49 chr3 119704433 119704636 -39895147 + B4A SINE B4 1 205 -87 3 1498 326 134 15 0 chr3 119704672 119704739 -39895044 + (GA)n Simple_repeat Simple_repeat 2 69 0 3 1498 264 254 66 66 chr3 119704739 119704815 -39894968 + B4A SINE B4 217 292 0 3 1498 394 248 56 63 chr3 119706616 119706758 -39893025 + MIRb SINE MIR 122 262 0 3 1498 306 73 0 0 chr3 119706861 119706902 -39892881 + (TG)n Simple_repeat Simple_repeat 1 41 0 3 1498 358 368 87 26 chr3 119706914 119707109 -39892674 - B4A SINE B4 -20 272 66 3 1498 198 0 0 0 chr3 119707476 119707498 -39892285 + (A)n Simple_repeat Simple_repeat 1 22 0 3 1498 267 305 54 15 chr3 119707883 119708013 -39891770 - MIRb SINE MIR -10 258 124 3 1498 346 301 95 27 chr3 119708271 119708418 -39891365 - MER34A1 LTR ERV1 0 587 431 3 1498 392 279 22 25 chr3 119708558 119708698 -39891085 - B1F1 SINE Alu -5 144 1 3 1498 478 248 20 41 chr3 119708945 119709092 -39890691 + RSINE1 SINE B4 5 148 -17 3 1498 539 262 85 95 chr3 119709270 119709565 -39890218 - B4A SINE B4 0 292 1 3 1498 260 330 20 20 chr3 119709739 119709841 -39889942 + Lx8 LINE L1 7152 7253 -220 3 1498 276 120 0 0 chr3 119709941 119709991 -39889792 + (CA)n Simple_repeat Simple_repeat 1 50 0 3 1498 22 70 0 0 chr3 119710115 119710158 -39889625 + AT_rich Low_complexity Low_complexity 1 43 0 3 1498 4132 218 43 66 chr3 119710575 119711498 -39888285 + RMER19B LTR ERVK 1 902 0 3 1498 224 290 0 16 chr3 119711502 119711565 -39888218 - PB1D10 SINE Alu -45 72 11 3 1498 1925 171 40 3 chr3 119712040 119712386 -39887397 + ORR1B2 LTR MaLR 1 359 -8 3 1498 378 0 0 0 chr3 119712395 119712437 -39887346 + (TTTTG)n Simple_repeat Simple_repeat 2 43 0 3 1498 180 0 0 0 chr3 119712818 119712838 -39886945 + (TG)n Simple_repeat Simple_repeat 1 20 0 3 1498 579 374 51 9 chr3 119712855 119713071 -39886712 - B4A SINE B4 -27 265 41 3 1498 876 308 60 52 chr3 119713338 119713705 -39886078 + MTEa LTR MaLR 1 370 -9 3 1498 196 287 79 24 chr3 119715135 119715263 -39884520 + MIR SINE MIR 35 170 -106 3 1498 452 256 0 114 chr3 119715588 119715720 -39884063 - RMER10A LTR ERVL -324 118 2 3 1498 301 306 76 0 chr3 119715754 119715898 -39883885 - RMER17C-int LTR ERVK -60 3178 3024 3 1498 1129 176 43 0 chr3 119715998 119716186 -39883597 - RMER10B LTR ERVL -202 196 1 3 1498 255 286 121 97 chr3 119716252 119716376 -39883407 + MLT1D LTR MaLR 1 127 -378 3 1498 432 290 22 11 chr3 119716407 119716585 -39883198 + (TA)n Simple_repeat Simple_repeat 1 180 0 3 1498 903 258 164 32 chr3 119717680 119717992 -39881791 + MTEa LTR MaLR 1 353 -26 3 1498 201 413 82 5 chr3 119719054 119719261 -39880522 - MIRb SINE MIR -22 246 24 3 1498 206 170 62 21 chr3 119719628 119719676 -39880107 + MIRc SINE MIR 104 153 -115 3 1498 491 143 22 0 chr3 119720177 119720268 -39879515 + GA-rich Low_complexity Low_complexity 4 96 0 3 1498 1132 100 0 22 chr3 119720270 119720454 -39879329 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 3 1498 546 16 0 0 chr3 119720454 119720516 -39879267 + (GGAA)n Simple_repeat Simple_repeat 3 65 0 3 1498 252 86 0 0 chr3 119722483 119722518 -39877265 + (TTCA)n Simple_repeat Simple_repeat 1 35 0 3 1498 378 345 50 0 chr3 119722518 119722657 -39877126 - L2b LINE L2 -17 3358 3213 3 1498 429 20 0 0 chr3 119723686 119723736 -39876047 + (CA)n Simple_repeat Simple_repeat 2 51 0 3 1498 1145 304 151 32 chr3 119724396 119725085 -39874698 - LTR48 LTR ERV1 -12 775 5 3 1498 677 290 35 165 chr3 119725728 119726153 -39873630 - ORR1D2 LTR MaLR 0 370 1 3 1498 306 226 35 23 chr3 119726278 119726364 -39873419 + MER34A1 LTR ERV1 17 103 -468 3 1498 1432 135 95 4 chr3 119726376 119726473 -39873310 - Lx2 LINE L1 -10 6987 6883 3 1498 411 21 0 0 chr3 119726473 119726521 -39873262 + (CCCA)n Simple_repeat Simple_repeat 2 49 0 3 1498 1432 135 95 4 chr3 119726521 119726676 -39873107 - Lx2 LINE L1 -115 6882 6713 3 1498 15150 187 90 17 chr3 119727030 119730005 -39869778 + L1_Mur2 LINE L1 907 4061 -1819 3 1498 339 25 0 0 chr3 119730005 119730045 -39869738 + (TC)n Simple_repeat Simple_repeat 2 41 0 3 1498 369 0 0 0 chr3 119730045 119730085 -39869698 + (TA)n Simple_repeat Simple_repeat 2 42 0 3 1498 15150 188 77 20 chr3 119730085 119730320 -39869463 + L1_Mur2 LINE L1 4062 4360 -1520 3 1498 353 22 22 0 chr3 119730320 119730366 -39869417 + (TG)n Simple_repeat Simple_repeat 2 48 0 3 1498 15150 188 77 20 chr3 119730366 119731296 -39868487 + L1_Mur2 LINE L1 4361 5336 -544 3 1498 225 83 0 0 chr3 119731309 119731345 -39868438 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 3 1498 3231 179 163 61 chr3 119731346 119732169 -39867614 - RMER19B LTR ERVK -18 884 1 3 1498 1146 173 0 92 chr3 119732173 119732434 -39867349 + L1_Mur2 LINE L1 5367 5603 -274 3 1498 2773 229 41 17 chr3 119732433 119732544 -39867239 + Lx5 LINE L1 6392 6501 -549 3 1498 6577 82 24 9 chr3 119732544 119733459 -39866324 - RLTR13B3 LTR ERVK 0 929 1 3 1498 2773 229 41 17 chr3 119733459 119733986 -39865797 + Lx5 LINE L1 6502 7045 -5 3 1498 258 279 68 23 chr3 119734236 119734324 -39865459 + ORR1D2 LTR MaLR 279 370 0 3 1498 362 342 66 0 chr3 119734325 119734521 -39865262 + MER34A1 LTR ERV1 269 477 -110 3 1498 1877 167 11 86 chr3 119734560 119734945 -39864838 + ORR1B1 LTR MaLR 41 394 0 3 1498 695 234 51 42 chr3 119734975 119735189 -39864594 - B3 SINE B2 0 216 1 3 1498 25 31 0 0 chr3 119735196 119735228 -39864555 + AT_rich Low_complexity Low_complexity 1 32 0 3 1498 382 235 66 36 chr3 119736134 119736271 -39863512 - HAL1-2a_MD LINE L1 -517 2507 2367 3 1498 356 186 35 23 chr3 119736328 119736499 -39863284 + (TG)n Simple_repeat Simple_repeat 1 173 0 3 1498 244 128 75 25 chr3 119736499 119736579 -39863204 + (TATG)n Simple_repeat Simple_repeat 2 85 0 3 1498 474 18 0 0 chr3 119737220 119737275 -39862508 + (TA)n Simple_repeat Simple_repeat 1 55 0 3 1498 331 310 25 69 chr3 119738559 119738977 -39860806 + L1MCa LINE L1 923 1416 -5335 3 1498 1050 288 107 52 chr3 119739021 119739697 -39860086 + L1MCa LINE L1 3390 4145 -2419 3 1498 303 140 0 0 chr3 119739697 119739747 -39860036 + (CAT)n Simple_repeat Simple_repeat 1 50 0 3 1498 1050 280 105 52 chr3 119739747 119740074 -39859709 + L1MCa LINE L1 4146 4466 -2098 3 1498 3660 204 121 37 chr3 119740074 119741091 -39858692 + RLTR25A LTR ERVK 1 1102 -1 4 1498 331 293 82 13 chr3 119741112 119741271 -39858512 + L1MCa LINE L1 4494 4663 -1901 3 1498 515 286 127 21 chr3 119741436 119741625 -39858158 - ID_B1 SINE B4 -9 215 7 4 1498 4258 52 0 0 chr3 119741786 119742304 -39857479 - L1Md_F2 LINE L1 -19 6563 6046 4 1498 470 292 62 22 chr3 119742339 119742707 -39857076 - L1M5 LINE L1 -873 5273 4891 4 1498 232 253 173 0 chr3 119742707 119742782 -39857001 + B1F2 SINE Alu 2 89 -60 4 1498 249 93 18 36 chr3 119742784 119742820 -39856963 + (GAAAA)n Simple_repeat Simple_repeat 4 39 0 4 1498 966 116 0 0 chr3 119742820 119742967 -39856816 + (GGGGA)n Simple_repeat Simple_repeat 5 151 0 4 1498 249 93 18 36 chr3 119742967 119742986 -39856797 + (GAAAA)n Simple_repeat Simple_repeat 5 23 0 4 1498 303 93 0 0 chr3 119743497 119743540 -39856243 + (TTA)n Simple_repeat Simple_repeat 1 43 0 4 1498 578 320 23 17 chr3 119743596 119743768 -39856015 - B4A SINE B4 -119 173 1 4 1498 583 260 88 7 chr3 119744459 119744606 -39855177 - RSINE1 SINE B4 -4 161 3 4 1498 315 0 0 0 chr3 119746075 119746110 -39853673 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 4 1498 199 381 69 40 chr3 119746257 119746432 -39853351 + MIRb SINE MIR 3 182 -86 4 1498 375 23 0 0 chr3 119746469 119746513 -39853270 + (TTA)n Simple_repeat Simple_repeat 2 45 0 4 1498 340 247 206 0 chr3 119747066 119747163 -39852620 + B3A SINE B2 3 119 -79 4 1498 447 19 0 0 chr3 119747228 119747280 -39852503 + (GA)n Simple_repeat Simple_repeat 2 53 0 4 1498 647 285 148 102 chr3 119748270 119748614 -39851169 - MTD LTR MaLR -5 374 15 4 1498 1339 6 12 0 chr3 119749000 119749160 -39850623 + (GA)n Simple_repeat Simple_repeat 1 162 0 4 1498 3787 232 11 2 chr3 119749178 119750067 -39849716 - Lx9 LINE L1 -231 7413 6517 4 1498 603 161 163 19 chr3 119750063 119750278 -39849505 + Lx9 LINE L1 7397 7642 -2 4 1498 21 0 0 0 chr3 119750568 119750589 -39849194 + AT_rich Low_complexity Low_complexity 1 21 0 4 1498 646 270 13 46 chr3 119750880 119751094 -39848689 + B3A SINE B2 5 210 -6 4 1498 217 169 62 38 chr3 119751162 119751182 -39848601 + A-rich Low_complexity Low_complexity 5 27 0 4 1498 305 296 0 0 chr3 119751182 119751253 -39848530 + ID4_ SINE ID 3 73 -10 4 1498 217 169 62 38 chr3 119751253 119751312 -39848471 + A-rich Low_complexity Low_complexity 28 86 0 4 1498 261 0 0 0 chr3 119752449 119752478 -39847305 + (CA)n Simple_repeat Simple_repeat 2 30 0 4 1498 21 36 0 0 chr3 119754850 119754878 -39844905 + AT_rich Low_complexity Low_complexity 1 28 0 4 1498 258 113 0 78 chr3 119754983 119755060 -39844723 + (TCTCTG)n Simple_repeat Simple_repeat 2 72 0 4 1498 412 278 17 17 chr3 119755080 119755197 -39844586 - Lx8 LINE L1 -152 7321 7205 4 1498 413 256 8 23 chr3 119755470 119755598 -39844185 + Lx8 LINE L1 6334 6459 -1014 4 1498 529 268 36 48 chr3 119756689 119756854 -39842929 + RSINE1 SINE B4 3 165 0 4 1498 324 0 0 0 chr3 119757531 119757567 -39842216 + (TTAA)n Simple_repeat Simple_repeat 4 39 0 4 1498 207 69 0 0 chr3 119759884 119759913 -39839870 + (CAG)n Simple_repeat Simple_repeat 1 29 0 4 1498 377 138 12 0 chr3 119761719 119761799 -39837984 + (CA)n Simple_repeat Simple_repeat 1 81 0 4 1498 432 97 0 0 chr3 119761912 119761974 -39837809 + (TA)n Simple_repeat Simple_repeat 2 63 0 4 1498 27 29 0 0 chr3 119762085 119762119 -39837664 + AT_rich Low_complexity Low_complexity 1 34 0 4 1498 190 21 106 0 chr3 119763737 119763784 -39835999 + (TA)n Simple_repeat Simple_repeat 2 53 0 4 1498 320 264 38 8 chr3 119764895 119765035 -39834748 - Lx7 LINE L1 -11 7685 7563 4 1498 357 24 0 0 chr3 119765095 119765137 -39834646 + (CA)n Simple_repeat Simple_repeat 2 43 0 4 1498 1577 206 9 3 chr3 119765137 119765459 -39834324 - Lx7 LINE L1 -375 7321 6998 4 1498 445 333 88 6 chr3 119765717 119765898 -39833885 + Tigger5 DNA MER2_type 38 233 -2173 4 1498 308 333 21 0 chr3 119765914 119766010 -39833773 + Tigger5 DNA MER2_type 2305 2402 -4 4 1498 21 36 0 0 chr3 119766145 119766173 -39833610 + AT_rich Low_complexity Low_complexity 1 28 0 4 1498 811 179 6 6 chr3 119767061 119767241 -39832542 + (TA)n Simple_repeat Simple_repeat 1 180 0 4 1498 239 353 12 12 chr3 119767848 119767934 -39831849 + MER20B DNA MER1_type 85 170 -613 4 1498 568 312 82 16 chr3 119769256 119769513 -39830270 + B4 SINE B4 1 274 -18 4 1498 261 0 0 0 chr3 119769520 119769549 -39830234 + (CA)n Simple_repeat Simple_repeat 2 30 0 4 1498 231 240 0 0 chr3 119769718 119769768 -39830015 + T-rich Low_complexity Low_complexity 1 50 0 4 1498 5510 126 68 8 chr3 119769784 119770717 -39829066 - Lx3B LINE L1 -5 6968 5980 4 1498 26 82 0 0 chr3 119771125 119771186 -39828597 + AT_rich Low_complexity Low_complexity 1 61 0 4 1498 2328 84 6 24 chr3 119771253 119771594 -39828189 - MTB_Mm LTR MaLR -72 335 1 4 1498 248 154 0 19 chr3 119771713 119771766 -39828017 + CT-rich Low_complexity Low_complexity 2 53 0 4 1498 1328 71 0 5 chr3 119771878 119772089 -39827694 + (TTC)n Simple_repeat Simple_repeat 1 210 0 4 1498 510 218 121 0 chr3 119772103 119772227 -39827556 - B1_Mus2 SINE Alu -8 139 1 4 1498 23 0 0 0 chr3 119772615 119772638 -39827145 + AT_rich Low_complexity Low_complexity 1 23 0 4 1498 225 108 0 0 chr3 119772759 119772796 -39826987 + (TTCA)n Simple_repeat Simple_repeat 4 40 0 4 1498 1193 294 21 40 chr3 119772797 119773173 -39826610 - MTEb LTR MaLR -10 369 1 4 1498 509 298 46 31 chr3 119774448 119774642 -39825141 - RMER15 LTR ERVL -103 472 276 4 1498 458 17 17 0 chr3 119774791 119774850 -39824933 + (TG)n Simple_repeat Simple_repeat 1 60 0 4 1498 363 368 36 73 chr3 119774867 119775169 -39824614 - MLT1E1 LTR MaLR -363 291 1 4 1498 497 308 21 53 chr3 119775223 119775478 -39824305 + MLT1A1 LTR MaLR 119 406 -2 4 1498 241 241 85 37 chr3 119775698 119775780 -39824003 - LTR40b LTR ERVL -2 460 375 4 1498 794 283 90 70 chr3 119775877 119776322 -39823461 + Lx8 LINE L1 7019 7472 -1 4 1498 359 349 72 53 chr3 119777343 119777664 -39822119 - HAL1 LINE L1 -124 2383 2057 4 1498 281 234 45 36 chr3 119778119 119778230 -39821553 - L1M4 LINE L1 -685 5494 5383 4 1498 189 107 0 0 chr3 119778255 119778283 -39821500 + (TCTG)n Simple_repeat Simple_repeat 3 30 0 4 1498 432 0 0 0 chr3 119778326 119778374 -39821409 + (CA)n Simple_repeat Simple_repeat 2 49 0 4 1498 436 259 45 0 chr3 119778586 119778698 -39821085 - PB1D9 SINE Alu 0 120 4 4 1498 491 296 102 28 chr3 119778698 119778952 -39820831 - L1M4 LINE L1 -1049 5097 4825 4 1498 14656 32 3 43 chr3 119778952 119781665 -39818118 - L1Md_F2 LINE L1 -1 6581 3980 4 1498 408 278 29 91 chr3 119781677 119781887 -39817896 - L1M4 LINE L1 -1244 4902 4706 4 1498 1707 150 79 14 chr3 119781933 119782224 -39817559 + ORR1B2 LTR MaLR 1 310 -57 4 1498 1795 164 0 179 chr3 119782222 119782674 -39817109 + ORR1B2-int LTR MaLR 129 499 -1010 4 1498 2308 220 32 6 chr3 119782677 119783184 -39816599 + Lx5 LINE L1 6418 6937 -113 4 1498 4294 187 99 14 chr3 119783184 119784207 -39815576 + ORR1B2-int LTR MaLR 457 1505 -4 4 1498 2052 184 5 16 chr3 119784208 119784578 -39815205 + ORR1B2 LTR MaLR 2 367 0 4 1498 420 20 0 0 chr3 119784720 119784769 -39815014 + (TG)n Simple_repeat Simple_repeat 2 50 0 4 1498 3254 106 30 32 chr3 119784890 119785416 -39814367 - Lx LINE L1 0 6654 6130 4 1498 21 36 0 0 chr3 119786891 119786919 -39812864 + AT_rich Low_complexity Low_complexity 1 28 0 4 1498 656 180 102 0 chr3 119787197 119787325 -39812458 + B1_Mur1 SINE Alu 1 141 -8 4 1498 246 354 36 9 chr3 119787626 119787781 -39812002 - L2c LINE L2 -19 3356 3195 4 1498 418 91 0 0 chr3 119788615 119788670 -39811113 + RLTR10C LTR ERVK 1 55 -256 4 1498 2499 109 17 62 chr3 119788707 119789128 -39810655 + RLTR10C LTR ERVK 33 434 -2 4 1498 528 354 71 47 chr3 119789529 119789867 -39809916 - ORR1D2 LTR MaLR -7 363 18 4 1498 571 216 84 67 chr3 119790126 119790339 -39809444 - B3A SINE B2 0 195 9 4 1498 222 395 60 20 chr3 119791082 119791281 -39808502 + L2a LINE L2 2959 3165 -261 4 1498 552 214 25 33 chr3 119791753 119791874 -39807909 - B1_Mur2 SINE Alu -2 147 28 4 1498 214 289 19 0 chr3 119793487 119793539 -39806244 - RSINE1 SINE B4 -110 55 3 4 1498 423 0 0 0 chr3 119793562 119793609 -39806174 + (TTTTA)n Simple_repeat Simple_repeat 2 48 0 4 1498 1000 73 0 22 chr3 119793617 119793756 -39806027 - B1_Mus1 SINE Alu -12 136 1 4 1498 837 254 47 40 chr3 119794271 119794546 -39805237 + B4 SINE B4 2 278 -14 4 1498 360 0 0 0 chr3 119794870 119794910 -39804873 + (T)n Simple_repeat Simple_repeat 1 40 0 4 1498 533 294 7 0 chr3 119795206 119795342 -39804441 - B4A SINE B4 -154 138 2 4 1498 228 35 0 0 chr3 119795874 119795903 -39803880 + (CAAAA)n Simple_repeat Simple_repeat 3 31 0 4 1498 629 45 23 0 chr3 119797675 119797763 -39802020 + (TCTA)n Simple_repeat Simple_repeat 4 93 0 4 1498 418 348 30 0 chr3 119797763 119797898 -39801885 - RSINE1 SINE B4 -6 159 21 4 1498 4924 46 5 0 chr3 119798066 119798669 -39801114 - L1Md_F3 LINE L1 -2 6582 5977 4 1498 243 61 0 0 chr3 119798969 119799002 -39800781 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 4 1498 1349 226 91 103 chr3 119799049 119799370 -39800413 - MTD LTR MaLR 0 419 104 4 1498 498 46 0 0 chr3 119799370 119799435 -39800348 + (TAGA)n Simple_repeat Simple_repeat 2 66 0 4 1498 1349 226 91 103 chr3 119799435 119799532 -39800251 - MTD LTR MaLR -316 103 6 4 187 1384 229 55 17 chr3 119799720 119800081 -39799702 - ORR1D1 LTR MaLR -2 419 1 4 1499 432 0 0 0 chr3 119800367 119800415 -39799368 + (TG)n Simple_repeat Simple_repeat 2 49 0 4 1499 1861 207 62 17 chr3 119800452 119800855 -39798928 + MTC LTR MaLR 1 421 0 4 1499 205 341 0 23 chr3 119801686 119801773 -39798010 + MER5B DNA MER1_type 94 178 0 4 1499 25 31 0 0 chr3 119801865 119801897 -39797886 + AT_rich Low_complexity Low_complexity 1 32 0 4 1499 333 0 0 0 chr3 119801897 119801934 -39797849 + (TG)n Simple_repeat Simple_repeat 1 37 0 4 1499 484 269 46 102 chr3 119801934 119802111 -39797672 - B3A SINE B2 -36 180 12 4 1499 899 8 33 0 chr3 119803729 119803849 -39795934 + (GA)n Simple_repeat Simple_repeat 1 124 0 4 1499 1239 277 51 17 chr3 119804061 119804413 -39795370 + MTE2b LTR MaLR 4 367 -12 5 1499 272 448 14 24 chr3 119804386 119804594 -39795189 - LTR16C LTR ERVL -191 298 93 5 1499 1249 47 0 0 chr3 119806150 119806298 -39793485 - B1_Mus1 SINE Alu 0 148 1 5 1499 450 338 84 55 chr3 119806311 119806858 -39792925 + L1M5 LINE L1 2586 3148 -2998 5 1499 238 250 0 0 chr3 119807205 119807265 -39792518 + Lx9 LINE L1 7411 7470 -174 5 1499 432 0 0 0 chr3 119807267 119807315 -39792468 + (TAA)n Simple_repeat Simple_repeat 3 50 0 5 1499 23 33 0 0 chr3 119807316 119807346 -39792437 + AT_rich Low_complexity Low_complexity 1 30 0 5 1499 474 18 0 0 chr3 119807363 119807418 -39792365 + (GA)n Simple_repeat Simple_repeat 1 55 0 5 1499 36 23 0 0 chr3 119807470 119807513 -39792270 + AT_rich Low_complexity Low_complexity 1 43 0 5 1499 33791 35 1 0 chr3 119807593 119813488 -39786295 + L1Md_T LINE L1 1 5589 -297 5 1499 8925 7 0 2 chr3 119813488 119814519 -39785264 + L1Md_T LINE L1 5590 6585 0 5 1499 216 0 0 0 chr3 119814659 119814683 -39785100 + (TGAA)n Simple_repeat Simple_repeat 1 24 0 5 1499 2697 64 16 3 chr3 119814872 119815235 -39784548 + L1_Mus1 LINE L1 6200 6567 0 5 1499 2656 76 0 19 chr3 119815291 119815666 -39784117 - L1Md_F2 LINE L1 -1 6581 6214 5 1499 5068 80 1 0 chr3 119815668 119816395 -39783388 + L1_Mm LINE L1 2876 3603 -2280 5 1499 189 107 0 0 chr3 119816466 119816494 -39783289 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 5 1499 24 0 0 0 chr3 119816546 119816570 -39783213 + AT_rich Low_complexity Low_complexity 1 24 0 5 1499 1006 95 0 39 chr3 119816593 119816747 -39783036 - B1_Mus1 SINE Alu 0 148 1 5 1499 465 19 0 0 chr3 119816824 119816878 -39782905 + (TC)n Simple_repeat Simple_repeat 2 55 0 5 1499 485 80 13 0 chr3 119816878 119816952 -39782831 + (TG)n Simple_repeat Simple_repeat 1 76 0 5 1499 351 360 52 75 chr3 119816996 119817209 -39782574 - B4 SINE B4 -20 272 65 5 1499 207 186 0 0 chr3 119820937 119820980 -39778803 + A-rich Low_complexity Low_complexity 1 43 0 5 1499 8522 11 0 0 chr3 119822672 119824063 -39775720 - L1Md_T LINE L1 0 6582 5192 5 1499 603 0 0 0 chr3 119824958 119825025 -39774758 + (TC)n Simple_repeat Simple_repeat 1 67 0 5 1499 180 0 0 0 chr3 119825293 119825313 -39774470 + (TA)n Simple_repeat Simple_repeat 2 21 0 5 1499 514 270 51 87 chr3 119825319 119825595 -39774188 + MER44A DNA MER2_type 7 272 -67 5 1499 1157 291 20 111 chr3 119825605 119826011 -39773772 + MTE2a LTR MaLR 11 379 0 5 1499 235 350 334 28 chr3 119826479 119826767 -39773016 + MLT1B LTR MaLR 4 379 -11 5 1499 1449 113 117 0 chr3 119827471 119827727 -39772056 + Lx2A1 LINE L1 6708 6993 -15 5 1499 749 318 75 8 chr3 119828063 119828317 -39771466 - B4A SINE B4 -20 272 2 5 1499 345 59 59 0 chr3 119829021 119829089 -39770694 + (TTTTG)n Simple_repeat Simple_repeat 5 76 0 5 1499 266 235 363 0 chr3 119829646 119829748 -39770035 + B1_Mus1 SINE Alu 2 140 -8 5 1499 1025 136 6 0 chr3 119829762 119829939 -39769844 + (GGAA)n Simple_repeat Simple_repeat 3 180 0 5 1499 3033 213 69 43 chr3 119829971 119830766 -39769017 - RMER13B LTR ERVK 0 908 1 5 1499 568 323 103 32 chr3 119830845 119831155 -39768628 - MER58B DNA MER1_type -8 333 2 5 1499 24 0 0 0 chr3 119831273 119831297 -39768486 + AT_rich Low_complexity Low_complexity 1 24 0 5 1499 385 327 53 29 chr3 119831349 119831519 -39768264 - B3 SINE B2 -5 211 38 5 1499 808 277 94 85 chr3 119831547 119831878 -39767905 - MTE2b LTR MaLR -45 334 1 5 1499 203 194 26 53 chr3 119832090 119832166 -39767617 + A-rich Low_complexity Low_complexity 2 75 0 5 1499 1220 257 53 16 chr3 119832166 119832546 -39767237 - Lx7 LINE L1 -396 7300 6907 5 1499 22 0 0 0 chr3 119833250 119833272 -39766511 + AT_rich Low_complexity Low_complexity 1 22 0 5 1499 850 227 6 0 chr3 119833300 119833476 -39766307 + Lx9 LINE L1 6609 6785 -859 5 1499 869 226 95 30 chr3 119833472 119833768 -39766015 + Lx9 LINE L1 7311 7625 -19 5 1499 846 290 83 64 chr3 119834071 119834441 -39765342 + L1MA8 LINE L1 5642 6025 -266 5 1499 192 77 0 0 chr3 119834441 119834467 -39765316 + (TTAA)n Simple_repeat Simple_repeat 3 28 0 5 1499 1293 191 13 0 chr3 119834467 119834703 -39765080 - Lx4A LINE L1 -14 7044 6806 5 1499 846 290 83 64 chr3 119834703 119834969 -39764814 + L1MA8 LINE L1 6026 6290 -1 5 1499 565 219 0 38 chr3 119836066 119836199 -39763584 + Lx LINE L1 976 1103 -5983 5 1499 8972 148 293 9 chr3 119836175 119839594 -39760189 + Lx LINE L1 2150 6638 -16 5 1499 276 30 0 0 chr3 119839594 119839627 -39760156 + (TAAA)n Simple_repeat Simple_repeat 1 33 0 5 1499 1508 152 32 7 chr3 119839628 119839912 -39759871 + L1_Mur2 LINE L1 4513 4803 -1074 5 1499 1951 231 39 10 chr3 119839896 119840302 -39759481 + Lx5 LINE L1 6633 7050 0 5 1499 992 302 50 50 chr3 119840568 119840931 -39758852 + MTE2a LTR MaLR 49 394 -25 5 1499 712 316 88 88 chr3 119840929 119841304 -39758479 - MER21B LTR ERV1 -214 649 275 5 1499 401 141 43 0 chr3 119841805 119841897 -39757886 - L1Md_F2 LINE L1 0 6582 6487 5 1499 22 0 0 0 chr3 119841974 119841996 -39757787 + AT_rich Low_complexity Low_complexity 1 22 0 5 1499 305 242 78 30 chr3 119842134 119842300 -39757483 - RLTR21 LTR ERVK -317 1255 1082 5 1499 1426 284 64 43 chr3 119842414 119843174 -39756609 - L1MA9 LINE L1 -83 6229 5455 5 1499 976 293 91 41 chr3 119843283 119844243 -39755540 - L1MA9 LINE L1 -842 5298 4277 5 1499 460 133 49 7 chr3 119844272 119844416 -39755367 + (TCTA)n Simple_repeat Simple_repeat 4 153 0 5 1499 452 176 0 0 chr3 119844440 119844508 -39755275 + L1_Mur3 LINE L1 264 331 -7381 5 1499 1429 220 85 3 chr3 119844506 119844884 -39754899 - L1_Mur3 LINE L1 -6778 934 526 5 1499 195 129 0 0 chr3 119845361 119845392 -39754391 + (T)n Simple_repeat Simple_repeat 1 31 0 5 1499 318 26 0 0 chr3 119845418 119845457 -39754326 + (TG)n Simple_repeat Simple_repeat 2 40 0 5 1499 212 267 13 0 chr3 119845524 119845599 -39754184 + GA-rich Low_complexity Low_complexity 1 76 0 5 1499 246 183 55 27 chr3 119845562 119845635 -39754148 + (CAGA)n Simple_repeat Simple_repeat 2 76 0 5 1499 234 183 40 70 chr3 119845726 119845826 -39753957 + Lx9 LINE L1 7521 7617 -27 5 1499 315 339 27 43 chr3 119846410 119846595 -39753188 + L1MEg1 LINE L1 1 182 -6053 5 1499 1260 161 55 0 chr3 119847330 119847548 -39752235 + MTC LTR MaLR 1 230 -191 5 1499 353 353 90 12 chr3 119847648 119847903 -39751880 + L1MEg1 LINE L1 3422 3696 -3541 5 1499 773 276 0 5 chr3 119848512 119848716 -39751067 - Lx6 LINE L1 -198 7262 7060 5 1499 429 36 0 0 chr3 119848735 119848790 -39750993 + (TATG)n Simple_repeat Simple_repeat 2 56 0 5 1499 2243 66 0 0 chr3 119848790 119849072 -39750711 - L1_Mus1 LINE L1 -2 6565 6284 5 1499 313 388 37 5 chr3 119850388 119850577 -39749206 + L1M5 LINE L1 5546 5740 -500 5 1499 1244 97 26 26 chr3 119851176 119851366 -39748417 - B2_Mm2 SINE B2 -4 191 2 5 1499 504 277 75 117 chr3 119851641 119852012 -39747771 + L1MEd LINE L1 923 1246 -4873 5 1499 723 309 65 90 chr3 119852024 119852380 -39747403 - MT2A LTR ERVL 0 533 187 5 1499 801 138 0 0 chr3 119852400 119852545 -39747238 + (TG)n Simple_repeat Simple_repeat 1 145 0 5 1499 22 0 0 0 chr3 119852627 119852649 -39747134 + AT_rich Low_complexity Low_complexity 1 22 0 5 1499 264 59 0 0 chr3 119852757 119852791 -39746992 + (TAAA)n Simple_repeat Simple_repeat 3 36 0 5 1499 213 159 0 0 chr3 119853029 119853073 -39746710 + (TTA)n Simple_repeat Simple_repeat 2 45 0 5 1499 358 366 0 0 chr3 119853395 119853496 -39746287 - ID_B1 SINE B4 -7 217 117 5 1499 326 272 41 61 chr3 119853848 119853946 -39745837 + MTE2b LTR MaLR 1 96 -283 5 1499 245 320 13 0 chr3 119853948 119854023 -39745760 + MTE2b LTR MaLR 58 133 -246 5 1499 326 196 0 0 chr3 119854044 119854100 -39745683 - HAL1-3A_ME LINE L1 -830 2028 1973 5 1499 704 216 3 6 chr3 119854102 119854448 -39745335 + (TG)n Simple_repeat Simple_repeat 1 344 0 5 1499 250 271 159 37 chr3 119854526 119854771 -39745012 - L1MC4 LINE L1 -199 7843 7569 5 1499 210 207 0 0 chr3 119854816 119854874 -39744909 + (TG)n Simple_repeat Simple_repeat 1 58 0 5 1499 234 220 0 0 chr3 119855203 119855262 -39744521 + (TG)n Simple_repeat Simple_repeat 1 59 0 5 1499 1022 138 6 0 chr3 119856516 119856690 -39743093 + (TA)n Simple_repeat Simple_repeat 1 175 0 5 1499 555 289 90 17 chr3 119857449 119857738 -39742045 - L1M5 LINE L1 -536 5637 5328 5 1499 27 81 0 0 chr3 119857780 119857842 -39741941 + AT_rich Low_complexity Low_complexity 1 62 0 5 1499 182 329 34 34 chr3 119858104 119858192 -39741591 + L2 LINE L2 2263 2350 -1069 5 1499 258 309 15 0 chr3 119858440 119858508 -39741275 - ID4_ SINE ID 0 83 15 5 1499 246 294 87 87 chr3 119859147 119859285 -39740498 - MamGypLTR1c LTR Gypsy -569 234 97 5 1499 21 36 0 0 chr3 119859601 119859629 -39740154 + AT_rich Low_complexity Low_complexity 1 28 0 5 1499 339 25 0 0 chr3 119859891 119859931 -39739852 + (TG)n Simple_repeat Simple_repeat 1 40 0 5 1499 357 297 35 35 chr3 119860520 119860663 -39739120 + RSINE1 SINE B4 8 150 -15 5 1499 189 0 0 0 chr3 119861567 119861588 -39738195 + (AATTG)n Simple_repeat Simple_repeat 2 22 0 5 1499 342 0 0 0 chr3 119862217 119862255 -39737528 + (TG)n Simple_repeat Simple_repeat 1 38 0 5 1499 632 269 148 13 chr3 119862255 119862476 -39737307 + MTD LTR MaLR 155 405 -14 5 1499 217 163 23 0 chr3 119862707 119862750 -39737033 + T-rich Low_complexity Low_complexity 2 45 0 5 1499 1392 129 33 0 chr3 119862972 119863212 -39736571 + BGLII_A LTR ERVK 198 445 0 5 1499 552 68 0 0 chr3 119863291 119863364 -39736419 + (GGA)n Simple_repeat Simple_repeat 3 75 0 5 1499 1302 69 0 0 chr3 119863365 119863539 -39736244 + (GAA)n Simple_repeat Simple_repeat 2 175 0 5 1499 1855 26 4 38 chr3 119863581 119863820 -39735963 + L1Md_F2 LINE L1 6337 6567 -15 5 1499 449 78 19 47 chr3 119863922 119864029 -39735754 + (CAAAA)n Simple_repeat Simple_repeat 2 105 0 5 1499 657 0 0 0 chr3 119864674 119864747 -39735036 + (TTCC)n Simple_repeat Simple_repeat 4 76 0 6 1499 258 333 101 0 chr3 119864868 119865027 -39734756 - L1MCb LINE L1 -5250 795 621 6 1499 318 314 129 17 chr3 119865191 119865369 -39734414 + L1MC3 LINE L1 865 1062 -5446 6 1499 360 335 38 8 chr3 119865470 119865708 -39734075 + L1M2 LINE L1 4780 5024 -1119 6 1499 558 62 0 77 chr3 119865714 119865818 -39733965 - L1Md_F2 LINE L1 0 6582 6487 6 1499 414 0 0 0 chr3 119865822 119865868 -39733915 + (T)n Simple_repeat Simple_repeat 1 46 0 6 1499 375 313 164 56 chr3 119866149 119866491 -39733292 - RMER20B LTR ERVK -15 612 234 6 1499 8864 41 4 3 chr3 119867016 119868802 -39730981 - L1Md_F2 LINE L1 0 6582 4795 6 1499 1107 252 91 22 chr3 119868972 119869240 -39730543 + L1MC3 LINE L1 2264 2540 -3781 6 1499 506 16 16 0 chr3 119869240 119869303 -39730480 + (TTTTG)n Simple_repeat Simple_repeat 3 66 0 6 1499 1107 288 86 16 chr3 119869303 119869734 -39730049 + L1MC3 LINE L1 2541 3005 -3316 6 1499 1021 309 65 103 chr3 119869725 119870693 -39729090 + L1MC3 LINE L1 5658 6588 -1372 6 1499 252 250 169 11 chr3 119870864 119870953 -39728830 + L1MC3 LINE L1 6750 6852 -1108 6 1499 733 265 84 19 chr3 119871074 119871336 -39728447 + B4A SINE B4 1 279 -13 6 1499 212 133 0 43 chr3 119871419 119871466 -39728317 + CT-rich Low_complexity Low_complexity 3 47 0 6 1499 1175 208 28 0 chr3 119871477 119871732 -39728051 - Lx LINE L1 -13 6641 6380 6 1499 422 277 66 42 chr3 119871752 119871918 -39727865 - B3A SINE B2 -28 170 1 6 1499 462 36 0 0 chr3 119874426 119874482 -39725301 + (TG)n Simple_repeat Simple_repeat 2 57 0 6 1499 283 238 0 0 chr3 119874521 119874584 -39725199 - L1MEc LINE L1 -630 5987 5925 6 1499 226 91 73 29 chr3 119875044 119875112 -39724671 + CT-rich Low_complexity Low_complexity 2 72 0 6 1499 611 208 41 20 chr3 119875129 119875276 -39724507 - B1_Mur4 SINE Alu 0 150 1 6 1499 293 263 86 43 chr3 119875343 119875506 -39724277 - L1MD LINE L1 -1015 5131 4962 6 1499 540 297 99 50 chr3 119875804 119876307 -39723476 - L1MEc LINE L1 -1811 4508 3981 6 1499 331 324 136 47 chr3 119876603 119876817 -39722966 - B4 SINE B4 -59 233 1 6 1499 317 275 126 73 chr3 119876966 119877425 -39722358 - L1MEc LINE L1 -4168 2232 1752 6 1499 279 0 0 0 chr3 119877425 119877456 -39722327 + (TG)n Simple_repeat Simple_repeat 2 32 0 6 1499 317 275 126 73 chr3 119877456 119877884 -39721899 - L1MEc LINE L1 -4649 1751 1298 6 1499 650 270 79 0 chr3 119878139 119878391 -39721392 - L1MEc LINE L1 -5425 975 704 6 1499 849 155 0 0 chr3 119878413 119878561 -39721222 + CT-rich Low_complexity Low_complexity 2 149 0 6 1499 21 71 0 0 chr3 119879412 119879454 -39720329 + AT_rich Low_complexity Low_complexity 1 42 0 6 1499 351 0 0 0 chr3 119880117 119880156 -39719627 + (TA)n Simple_repeat Simple_repeat 1 39 0 6 1499 370 345 26 0 chr3 119880362 119880478 -39719305 - Charlie16a DNA MER1_type -215 127 9 6 1499 27 87 0 0 chr3 119880778 119880847 -39718936 + AT_rich Low_complexity Low_complexity 1 69 0 6 1499 326 42 21 0 chr3 119881020 119881068 -39718715 + (TG)n Simple_repeat Simple_repeat 1 49 0 6 1499 276 259 138 23 chr3 119881349 119881436 -39718347 - PB1D7 SINE Alu -9 111 15 6 1499 282 56 0 0 chr3 119882891 119882927 -39716856 + (A)n Simple_repeat Simple_repeat 1 36 0 6 1499 252 230 67 13 chr3 119883376 119883451 -39716332 - MLT1K LTR MaLR 0 595 517 6 1499 527 261 97 0 chr3 119883637 119883832 -39715951 + L1MB3 LINE L1 5713 5926 -257 6 1499 794 274 72 23 chr3 119884681 119884946 -39714837 + B4 SINE B4 2 279 -13 6 1499 656 289 25 65 chr3 119885179 119885379 -39714404 + ID_B1 SINE B4 1 192 -32 6 1499 265 197 79 32 chr3 119886268 119886331 -39713452 + MT2B LTR ERVL 173 238 -363 6 1499 267 194 194 0 chr3 119886277 119886339 -39713444 + PB1D9 SINE Alu 23 96 -24 6 1499 306 0 0 0 chr3 119886343 119886377 -39713406 + (TC)n Simple_repeat Simple_repeat 1 34 0 6 1499 432 0 0 0 chr3 119886377 119886424 -39713359 + (CA)n Simple_repeat Simple_repeat 1 48 0 6 1499 970 170 28 0 chr3 119886555 119886737 -39713046 - B2_Mm2 SINE B2 -7 188 2 6 1499 193 273 0 0 chr3 119886861 119886905 -39712878 - MIR SINE MIR -199 63 20 6 1499 395 208 12 105 chr3 119887419 119887505 -39712278 - RSINE1 SINE B4 -85 80 3 6 1499 760 61 17 0 chr3 119889439 119889554 -39710229 + (CA)n Simple_repeat Simple_repeat 2 118 0 6 1499 387 356 35 92 chr3 119889556 119889840 -39709943 - B4A SINE B4 -22 270 3 6 1499 204 350 94 57 chr3 119889943 119890155 -39709628 - L2c LINE L2 -51 3336 3117 6 1499 393 236 0 0 chr3 119890169 119890241 -39709542 + ID4_ SINE ID 3 74 -9 6 1499 228 226 0 0 chr3 119890857 119890919 -39708864 + (CG)n Simple_repeat Simple_repeat 2 63 0 6 1499 230 377 115 50 chr3 119891357 119891575 -39708208 - MIR SINE MIR -11 251 20 6 1499 703 50 10 10 chr3 119891671 119891772 -39708011 + (TCTA)n Simple_repeat Simple_repeat 4 104 0 6 1499 387 350 31 61 chr3 119891836 119892064 -39707719 - MLT2C2 LTR ERVL -55 409 189 6 1499 902 234 91 0 chr3 119892070 119892267 -39707516 - B3 SINE B2 0 216 2 6 1499 23 0 0 0 chr3 119892295 119892318 -39707465 + AT_rich Low_complexity Low_complexity 1 23 0 6 1499 468 316 68 45 chr3 119892524 119892746 -39707037 - ORR1E LTR MaLR -104 255 29 6 1499 405 262 57 63 chr3 119892779 119892938 -39706845 - MLT2C2 LTR ERVL -296 168 11 6 1499 236 331 62 46 chr3 119893337 119893467 -39706316 - Charlie15a DNA MER1_type -15 209 78 6 1499 1070 164 17 6 chr3 119894443 119894621 -39705162 + URR1A DNA MER1_type 47 226 0 6 1499 270 0 0 0 chr3 119895363 119895393 -39704390 + (CA)n Simple_repeat Simple_repeat 1 30 0 6 1499 412 256 12 0 chr3 119897772 119897944 -39701839 + GA-rich Low_complexity Low_complexity 1 174 0 6 1499 459 349 20 13 chr3 119898158 119898309 -39701474 + RSINE1 SINE B4 6 157 -8 6 1499 309 51 0 0 chr3 119898309 119898348 -39701435 + (TG)n Simple_repeat Simple_repeat 2 40 0 6 1499 207 0 0 0 chr3 119898356 119898379 -39701404 + (CA)n Simple_repeat Simple_repeat 2 24 0 6 1499 27 0 0 0 chr3 119898453 119898480 -39701303 + AT_rich Low_complexity Low_complexity 1 27 0 6 1499 622 321 25 10 chr3 119898670 119898868 -39700915 + ID_B1 SINE B4 24 224 0 6 1499 378 0 0 0 chr3 119898954 119898996 -39700787 + (TG)n Simple_repeat Simple_repeat 2 43 0 6 1499 243 0 0 0 chr3 119899409 119899436 -39700347 + (CTA)n Simple_repeat Simple_repeat 3 29 0 6 1499 320 230 14 74 chr3 119899929 119900025 -39699758 - MLT1F LTR MaLR -43 517 444 6 1499 615 239 85 0 chr3 119900088 119900218 -39699565 + RSINE1 SINE B4 3 143 -22 6 1499 336 420 31 24 chr3 119900264 119900554 -39699229 - MLT1F LTR MaLR -133 415 124 6 1499 277 316 96 0 chr3 119900626 119900762 -39699021 + Tigger5 DNA MER2_type 9 157 -2249 6 1499 243 0 0 0 chr3 119901076 119901103 -39698680 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 6 1499 6391 104 32 1 chr3 119901201 119902168 -39697615 - Lx LINE L1 -3 6651 5655 6 1499 305 291 134 0 chr3 119903477 119903604 -39696179 - B1F SINE Alu -1 148 5 6 1499 424 264 157 0 chr3 119903850 119903971 -39695812 + B1F2 SINE Alu 5 144 -5 6 1499 236 299 9 71 chr3 119904535 119904654 -39695129 + B1_Mur1 SINE Alu 37 141 -8 6 1499 350 330 20 0 chr3 119905592 119905692 -39694091 + PB1D10 SINE Alu 3 104 -13 6 1499 273 167 0 0 chr3 119905705 119905759 -39694024 + A-rich Low_complexity Low_complexity 1 54 0 6 1499 337 186 127 14 chr3 119906213 119906284 -39693499 + ID4_ SINE ID 2 80 -3 6 1499 309 26 0 0 chr3 119906518 119906556 -39693227 + (TG)n Simple_repeat Simple_repeat 2 39 0 6 1499 591 271 39 8 chr3 119907253 119907383 -39692400 + RSINE1 SINE B4 3 136 -29 6 1499 4012 74 6 8 chr3 119907728 119908260 -39691523 - L1Md_F2 LINE L1 -2 6580 6050 6 1499 2142 30 0 0 chr3 119908260 119908525 -39691258 + L1Md_F2 LINE L1 5777 6041 -541 6 1499 504 0 0 0 chr3 119908997 119909053 -39690730 + (CA)n Simple_repeat Simple_repeat 1 56 0 6 1499 274 176 13 26 chr3 119910115 119910191 -39689592 + (TATG)n Simple_repeat Simple_repeat 2 76 0 6 1499 672 318 0 0 chr3 119912058 119912234 -39687549 + B3A SINE B2 6 181 -17 6 1499 219 245 0 39 chr3 119912365 119912416 -39687367 - PB1D7 SINE Alu -15 105 57 6 1499 240 59 0 0 chr3 119912506 119912540 -39687243 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 6 1499 725 48 19 0 chr3 119913186 119913291 -39686492 + (TCTCTG)n Simple_repeat Simple_repeat 2 108 0 6 1499 252 0 0 0 chr3 119913296 119913324 -39686459 + (CA)n Simple_repeat Simple_repeat 2 29 0 6 1499 253 293 177 100 chr3 119913898 119914118 -39685665 + B4A SINE B4 55 291 -1 6 1499 371 73 18 0 chr3 119914715 119914770 -39685013 + (TG)n Simple_repeat Simple_repeat 1 56 0 6 1499 228 154 0 0 chr3 119915521 119915560 -39684223 + T-rich Low_complexity Low_complexity 1 39 0 6 1499 2034 174 31 100 chr3 119921558 119921808 -39677975 - MTC LTR MaLR 0 421 212 6 1499 1161 82 0 0 chr3 119921808 119921954 -39677829 - B1_Mm SINE Alu 0 147 2 6 1499 2034 174 31 100 chr3 119921954 119922151 -39677632 - MTC LTR MaLR -210 211 5 6 1499 187 323 114 57 chr3 119922192 119922297 -39677486 - L2b LINE L2 -128 3247 3137 6 1499 23 54 0 0 chr3 119922364 119922401 -39677382 + AT_rich Low_complexity Low_complexity 1 37 0 6 1499 213 226 0 0 chr3 119923529 119923582 -39676201 + (CAGAGA)n Simple_repeat Simple_repeat 2 54 0 6 1499 344 235 0 7 chr3 119923594 119923731 -39676052 + (TA)n Simple_repeat Simple_repeat 1 136 0 6 1499 1214 244 124 67 chr3 119923751 119924185 -39675598 - MT2A LTR ERVL -69 464 6 6 1499 954 294 38 63 chr3 119924199 119924595 -39675188 + MLT1B LTR MaLR 5 390 0 6 1499 720 177 0 0 chr3 119925157 119925298 -39674485 + CT-rich Low_complexity Low_complexity 3 143 0 6 1499 364 267 131 37 chr3 119925409 119925665 -39674118 - L1M5 LINE L1 -2277 3869 3578 6 1499 297 0 0 0 chr3 119925763 119925796 -39673987 + (TC)n Simple_repeat Simple_repeat 2 34 0 6 1499 485 169 0 35 chr3 119925796 119925937 -39673846 + (TG)n Simple_repeat Simple_repeat 2 137 0 6 1499 197 290 16 0 chr3 119926248 119926310 -39673473 + L2a LINE L2 3113 3175 -251 6 1499 192 97 0 0 chr3 119926383 119926414 -39673369 + (T)n Simple_repeat Simple_repeat 1 31 0 6 1499 1166 278 88 44 chr3 119926415 119926799 -39672984 - MTD LTR MaLR -14 405 5 6 1499 778 290 58 118 chr3 119926902 119927383 -39672400 - RLTR12B LTR ERVK -30 498 47 7 1499 224 341 73 15 chr3 119927447 119927584 -39672199 + L2a LINE L2 3263 3407 -19 6 1499 22 0 0 0 chr3 119927597 119927619 -39672164 + AT_rich Low_complexity Low_complexity 1 22 0 7 1499 547 261 74 11 chr3 119927883 119928073 -39671710 - Charlie2a DNA MER1_type -1196 1665 1464 7 1499 1211 306 17 37 chr3 119928961 119929314 -39670469 - MTE2a LTR MaLR 0 379 34 7 1499 399 21 0 0 chr3 119929332 119929380 -39670403 + (TAGA)n Simple_repeat Simple_repeat 2 49 0 7 1499 461 372 78 36 chr3 119929380 119929434 -39670349 + MLT1A0 LTR MaLR 118 174 -234 7 1499 2090 183 205 31 chr3 119929434 119929952 -39669831 + RMER19C LTR ERVK 1 608 -3 7 1499 461 329 35 73 chr3 119929952 119930155 -39669628 + MLT1A0 LTR MaLR 158 395 -13 7 1499 240 319 108 40 chr3 119930469 119930720 -39669063 - Lx8 LINE L1 -2 7471 7204 7 187 402 345 53 19 chr3 119930805 119931071 -39668712 - Lx8 LINE L1 -9 7464 7190 7 1500 994 274 31 21 chr3 119931078 119931555 -39668228 + L1_Mur3 LINE L1 4005 4486 -1394 7 1500 1519 305 46 26 chr3 119931538 119932185 -39667598 - Lx8 LINE L1 -341 7132 6473 7 1500 243 281 24 0 chr3 119932195 119932277 -39667506 - L1MC3 LINE L1 -404 7381 7298 7 1500 405 0 0 0 chr3 119932560 119932605 -39667178 + (TA)n Simple_repeat Simple_repeat 2 46 0 7 1500 459 0 0 0 chr3 119932605 119932655 -39667128 + (TG)n Simple_repeat Simple_repeat 2 52 0 7 1500 324 261 122 0 chr3 119934876 119934991 -39664792 + HAL1-2a_MD LINE L1 2320 2448 -576 7 1500 243 88 0 0 chr3 119935424 119935458 -39664325 + (A)n Simple_repeat Simple_repeat 1 34 0 7 1500 732 90 8 24 chr3 119935936 119936061 -39663722 + (TTTTC)n Simple_repeat Simple_repeat 2 124 0 7 1500 338 268 166 16 chr3 119937049 119937216 -39662567 - MIR SINE MIR -2 260 36 7 1500 292 232 14 0 chr3 119937511 119937580 -39662203 + GA-rich Low_complexity Low_complexity 2 71 0 7 1500 411 21 0 0 chr3 119937580 119937628 -39662155 + (TG)n Simple_repeat Simple_repeat 2 49 0 7 1500 351 341 36 36 chr3 119937629 119937769 -39662014 - RSINE1 SINE B4 -24 141 2 7 1500 192 143 0 0 chr3 119938049 119938091 -39661692 + (A)n Simple_repeat Simple_repeat 1 42 0 7 1500 216 0 0 0 chr3 119939436 119939460 -39660323 + (A)n Simple_repeat Simple_repeat 1 24 0 7 1500 21 36 0 0 chr3 119940159 119940187 -39659596 + AT_rich Low_complexity Low_complexity 1 28 0 7 1500 461 135 0 11 chr3 119940671 119940761 -39659022 + (TG)n Simple_repeat Simple_repeat 2 90 0 7 1500 1998 125 6 63 chr3 119940768 119941102 -39658681 - ORR1A2 LTR MaLR 0 327 13 7 1500 243 239 50 33 chr3 119941104 119941130 -39658653 + (TCTA)n Simple_repeat Simple_repeat 3 26 0 7 1500 306 0 0 0 chr3 119941130 119941164 -39658619 + (TCCA)n Simple_repeat Simple_repeat 3 36 0 7 1500 243 239 50 33 chr3 119941164 119941258 -39658525 + (TCTA)n Simple_repeat Simple_repeat 4 102 0 7 1500 457 252 32 70 chr3 119942566 119942715 -39657068 + B4A SINE B4 2 135 -30 7 1500 465 19 0 0 chr3 119942715 119942769 -39657014 + (TG)n Simple_repeat Simple_repeat 1 54 0 7 1500 276 308 22 122 chr3 119942769 119942800 -39656983 + RSINE1 SINE B4 136 165 0 7 1500 214 95 30 60 chr3 119943422 119943489 -39656294 + (CATATA)n Simple_repeat Simple_repeat 2 66 0 7 1500 1803 217 54 18 chr3 119944814 119945204 -39654579 + MTD LTR MaLR 1 404 -15 7 1500 681 322 101 18 chr3 119945338 119945616 -39654167 - RMER15 LTR ERVL 0 575 275 7 1500 217 48 23 45 chr3 119946003 119946047 -39653736 + (CAA)n Simple_repeat Simple_repeat 1 43 0 7 1500 321 26 0 0 chr3 119946229 119946267 -39653516 + (TATG)n Simple_repeat Simple_repeat 2 39 0 7 1500 718 248 63 4 chr3 119946268 119946478 -39653305 - Lx5 LINE L1 -15 7043 6801 7 1500 645 266 0 14 chr3 119947740 119947881 -39651902 + B1_Mur4 SINE Alu 2 140 -10 7 1500 1053 307 63 97 chr3 119950314 119950952 -39648831 + RLTR18 LTR ERVK 1 616 0 7 1500 360 0 0 0 chr3 119950979 119951019 -39648764 + (CA)n Simple_repeat Simple_repeat 1 40 0 7 1500 2627 99 79 0 chr3 119951047 119951452 -39648331 - Lx2 LINE L1 -4 6993 6557 7 1500 798 175 0 23 chr3 119951911 119952086 -39647697 + Lx2B LINE L1 6826 6996 -4 7 1500 376 234 16 16 chr3 119952266 119952364 -39647419 - PB1D10 SINE Alu -6 114 17 7 1500 393 246 50 58 chr3 119952467 119952588 -39647195 + PB1D7 SINE Alu 1 120 0 7 1500 187 309 136 58 chr3 119952930 119953033 -39646750 + MIRc SINE MIR 72 182 -86 7 1500 905 352 70 22 chr3 119953738 119954240 -39645543 + MLT1F2 LTR MaLR 5 530 -30 7 1500 486 0 0 0 chr3 119954268 119954322 -39645461 + (TAGA)n Simple_repeat Simple_repeat 2 55 0 7 1500 192 217 0 0 chr3 119954324 119954370 -39645413 + GA-rich Low_complexity Low_complexity 2 47 0 7 1500 599 155 34 22 chr3 119954391 119954569 -39645214 + GA-rich Low_complexity Low_complexity 1 180 0 7 1500 799 318 31 17 chr3 119954578 119954866 -39644917 - B4 SINE B4 0 292 1 7 1500 459 322 144 22 chr3 119955575 119955845 -39643938 + RMER15 LTR ERVL 271 573 -2 7 1500 191 156 0 0 chr3 119956068 119956100 -39643683 - L2 LINE L2 -675 2744 2713 7 1500 220 346 37 9 chr3 119956151 119956259 -39643524 - MIRb SINE MIR -73 195 85 7 1500 266 315 44 17 chr3 119956455 119956636 -39643147 + L1MEf LINE L1 1050 1235 -4965 7 1500 2612 55 12 0 chr3 119956639 119956966 -39642817 + IAPEY_LTR LTR ERVK 55 385 0 7 1500 479 233 0 11 chr3 119959102 119959189 -39640594 + URR1B DNA MER1_type 6 91 -134 7 1500 710 191 0 45 chr3 119959195 119959349 -39640434 + L1VL2 LINE L1 96 242 -6093 7 1500 3542 128 61 4 chr3 119959353 119959946 -39639837 - RMER17B LTR ERVK -376 582 1 7 1500 23889 140 19 36 chr3 119959946 119962677 -39637106 + L1_Mus3 LINE L1 832 3474 -2409 7 1500 651 65 0 0 chr3 119962677 119962770 -39637013 + (CAAAC)n Simple_repeat Simple_repeat 5 97 0 7 1500 23889 142 22 44 chr3 119962770 119962874 -39636909 + L1_Mus3 LINE L1 3475 3596 -2287 7 1500 3423 28 5 0 chr3 119962874 119963268 -39636515 - MTA_Mm LTR MaLR 0 396 1 7 1500 23889 128 18 32 chr3 119963268 119966332 -39633451 + L1_Mus3 LINE L1 3597 6632 -6 7 1500 924 116 7 20 chr3 119966332 119966482 -39633301 + URR1B DNA MER1_type 78 225 0 7 1500 342 98 0 0 chr3 119967486 119967537 -39632246 + (CA)n Simple_repeat Simple_repeat 2 52 0 7 1500 293 195 31 39 chr3 119967549 119967677 -39632106 + (TAGA)n Simple_repeat Simple_repeat 4 130 0 7 1500 204 97 0 0 chr3 119967711 119967742 -39632041 + (TCTA)n Simple_repeat Simple_repeat 3 33 0 7 1500 342 327 11 17 chr3 119968645 119968819 -39630964 + Lx7 LINE L1 6769 6941 -755 7 1500 433 316 126 26 chr3 119968922 119969231 -39630552 + Lx8 LINE L1 7102 7441 -32 7 1500 798 39 0 0 chr3 119969481 119969583 -39630200 + (GA)n Simple_repeat Simple_repeat 2 103 0 7 1500 230 317 10 0 chr3 119970235 119970339 -39629444 - L1M2 LINE L1 -445 5852 5748 7 1500 271 157 21 73 chr3 119970656 119970752 -39629031 + (TTTG)n Simple_repeat Simple_repeat 2 92 0 7 1500 612 327 36 18 chr3 119970886 119971107 -39628676 + B4 SINE B4 55 279 -13 7 1500 452 281 66 56 chr3 119971194 119971586 -39628197 - L1MB7 LINE L1 -94 6090 5695 7 1500 199 29 27 54 chr3 119971746 119971783 -39628000 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 7 1500 471 304 75 75 chr3 119971792 119972084 -39627699 - L1MB7 LINE L1 -629 5549 5258 7 1500 1093 212 5 0 chr3 119972130 119972342 -39627441 - Lx6 LINE L1 -828 6632 6420 7 1500 686 72 10 0 chr3 119972351 119972448 -39627335 + (TTCC)n Simple_repeat Simple_repeat 3 100 0 7 1500 1154 82 0 0 chr3 119972469 119972616 -39627167 - B1_Mus1 SINE Alu 0 148 2 7 1500 594 326 6 0 chr3 119972617 119972798 -39626985 - Lx6 LINE L1 -1034 6426 6245 7 1500 201 235 0 0 chr3 119973189 119973240 -39626543 + (TCTCTG)n Simple_repeat Simple_repeat 2 52 0 7 1500 444 172 7 3 chr3 119973249 119973340 -39626443 + RLTR26 LTR ERVK 1 93 -716 7 1500 3351 106 4 2 chr3 119973340 119973831 -39625952 - MERVK26-int LTR ERVK -4372 2547 2056 7 1500 777 107 60 15 chr3 119973820 119973953 -39625830 - MERVK26-int LTR ERVK -6563 356 218 7 1500 376 177 10 77 chr3 119973944 119974048 -39625735 - MERVK26-int LTR ERVK -1631 97 1 7 1500 4143 160 79 40 chr3 119974048 119974978 -39624805 - RMER17B LTR ERVK 0 958 1 7 1500 480 158 0 0 chr3 119974981 119975095 -39624688 + (TCTG)n Simple_repeat Simple_repeat 1 114 0 7 1500 524 202 46 0 chr3 119975141 119975250 -39624533 - Lx6 LINE L1 -1211 6249 6136 7 1500 2501 246 43 69 chr3 119975255 119976076 -39623707 + Lx6 LINE L1 6662 7460 0 7 1500 231 333 89 17 chr3 119976232 119976412 -39623371 + MER96B DNA hAT 160 352 -65 7 1500 209 189 0 0 chr3 119977177 119977214 -39622569 + (ATGGTG)n Simple_repeat Simple_repeat 2 38 0 7 1500 618 305 48 35 chr3 119977539 119977770 -39622013 - MLT1E1A LTR MaLR -2 678 445 7 1500 228 272 76 42 chr3 119977850 119977969 -39621814 - MLT1E1A LTR MaLR -420 260 138 7 1500 2831 210 135 32 chr3 119978323 119979490 -39620293 - RMER1B Other Other -1 1065 18 7 1500 4724 192 61 32 chr3 119979500 119979730 -39620053 - Lx5 LINE L1 -5 7045 6822 7 1500 347 41 20 0 chr3 119979730 119979779 -39620004 + (CAGG)n Simple_repeat Simple_repeat 1 50 0 7 1500 4724 192 61 32 chr3 119979779 119980673 -39619110 - Lx5 LINE L1 -229 6821 5890 7 1500 2261 134 5 18 chr3 119980661 119981048 -39618735 + Lx5 LINE L1 5496 5877 0 7 1500 1753 126 29 4 chr3 119981415 119981693 -39618090 - Lx LINE L1 0 6654 6370 7 1500 438 94 0 0 chr3 119981950 119982014 -39617769 + (TG)n Simple_repeat Simple_repeat 2 65 0 7 1500 21 0 0 0 chr3 119984967 119984988 -39614795 + AT_rich Low_complexity Low_complexity 1 21 0 7 1500 251 136 0 43 chr3 119985622 119985691 -39614092 + T-rich Low_complexity Low_complexity 3 68 0 7 1500 636 259 173 25 chr3 119985721 119986005 -39613778 + MTD LTR MaLR 67 416 -3 7 1500 23 33 0 0 chr3 119986210 119986240 -39613543 + AT_rich Low_complexity Low_complexity 1 30 0 7 1500 508 258 12 42 chr3 119986261 119986427 -39613356 - RSINE1 SINE B4 0 165 5 7 1500 1037 203 39 0 chr3 119987950 119988157 -39611626 - URR1A DNA MER1_type -10 216 2 7 1500 532 292 101 67 chr3 119988172 119988505 -39611278 + RMER15 LTR ERVL 28 474 -101 7 1500 558 159 0 0 chr3 119988929 119989055 -39610728 + CT-rich Low_complexity Low_complexity 2 127 0 7 1500 405 0 0 0 chr3 119989078 119989123 -39610660 + (TG)n Simple_repeat Simple_repeat 2 46 0 7 1500 513 257 19 0 chr3 119989143 119989248 -39610535 - B3A SINE B2 -86 112 6 7 1500 459 283 199 13 chr3 119989993 119990229 -39609554 - B4 SINE B4 -12 280 1 7 1500 230 312 106 28 chr3 119994182 119994324 -39605459 + L2 LINE L2 2215 2367 -1052 7 1500 410 349 64 93 chr3 119995399 119995851 -39603932 - MER77 LTR ERVL -80 527 89 7 1500 407 346 107 23 chr3 119995953 119996169 -39603614 + MIRb SINE MIR 26 259 -9 7 1500 477 0 0 0 chr3 119996804 119996857 -39602926 + (TTCC)n Simple_repeat Simple_repeat 1 53 0 8 1500 941 26 9 0 chr3 119996857 119996972 -39602811 + (TTC)n Simple_repeat Simple_repeat 2 118 0 8 1500 1046 121 0 0 chr3 119996976 119997116 -39602667 - B1_Mus1 SINE Alu -7 141 2 8 1500 1567 239 81 21 chr3 119997545 119998074 -39601709 - L1_Rod LINE L1 -176 5671 5111 8 1500 637 200 53 7 chr3 119998072 119998223 -39601560 + L1_Rod LINE L1 5688 5845 -2 8 1500 2997 249 102 39 chr3 119998304 119999379 -39600404 + Lx9 LINE L1 6328 7470 -174 8 1500 276 30 0 0 chr3 119999398 119999431 -39600352 + (CA)n Simple_repeat Simple_repeat 1 33 0 8 1500 24 0 0 0 chr3 119999553 119999577 -39600206 + AT_rich Low_complexity Low_complexity 1 24 0 8 1500 325 351 84 45 chr3 119999577 119999935 -39599848 + L1MEd LINE L1 550 921 -5198 8 1500 1778 169 12 42 chr3 120000001 120000334 -39599449 + ORR1D1 LTR MaLR 50 372 -2 1 1500 575 112 0 10 chr3 120000371 120000470 -39599313 + (TA)n Simple_repeat Simple_repeat 2 99 0 2 1500 1146 286 57 62 chr3 120000519 120000888 -39598895 - MTEa LTR MaLR -12 367 1 3 1500 318 313 50 0 chr3 120001237 120001336 -39598447 + PB1D10 SINE Alu 14 117 0 4 1500 1242 252 39 56 chr3 120001691 120001780 -39598003 + ORR1E LTR MaLR 4 92 -267 5 1500 1237 153 13 67 chr3 120001780 120002018 -39597765 - URR1B DNA MER1_type 0 225 1 6 1500 1242 252 39 56 chr3 120002018 120002285 -39597498 + ORR1E LTR MaLR 93 353 -6 5 1500 4370 124 59 17 chr3 120002725 120003441 -39596342 + RMER6A LTR ERVK 3 748 -8 7 1500 21 0 0 0 chr3 120003872 120003893 -39595890 + AT_rich Low_complexity Low_complexity 1 21 0 8 1500 21 57 0 0 chr3 120003967 120004002 -39595781 + AT_rich Low_complexity Low_complexity 1 35 0 9 1500 28 0 0 0 chr3 120004160 120004188 -39595595 + AT_rich Low_complexity Low_complexity 1 28 0 1 1500 225 318 23 8 chr3 120004319 120004452 -39595331 + L1_Rod LINE L1 5693 5827 -20 1 1500 309 26 0 0 chr3 120004842 120004880 -39594903 + (TAGA)n Simple_repeat Simple_repeat 4 41 0 1 1500 21 0 0 0 chr3 120004915 120004936 -39594847 + AT_rich Low_complexity Low_complexity 1 21 0 1 1500 423 256 237 6 chr3 120005322 120005495 -39594288 - ID_B1 SINE B4 -10 214 2 1 1500 242 321 63 21 chr3 120005873 120006016 -39593767 + L1M4 LINE L1 4519 4667 -1479 1 1500 1274 82 18 0 chr3 120006250 120006421 -39593362 + B2_Mm1t SINE B2 2 175 -18 1 1500 216 0 0 0 chr3 120006813 120006837 -39592946 + (TCCTG)n Simple_repeat Simple_repeat 3 26 0 1 1500 339 254 26 0 chr3 120006945 120007037 -39592746 + MTEb LTR MaLR 281 375 -4 1 1500 15652 15 5 0 chr3 120010186 120012073 -39587710 + L1Md_T LINE L1 3691 5586 -297 1 1500 8348 35 0 7 chr3 120012073 120013076 -39586707 + L1Md_T LINE L1 5587 6582 0 1 1500 27 0 0 0 chr3 120013179 120013206 -39586577 + AT_rich Low_complexity Low_complexity 1 27 0 2 1500 1246 287 67 36 chr3 120013404 120014048 -39585735 - L1MC1 LINE L1 -345 5988 5325 2 1500 183 341 110 34 chr3 120015365 120015574 -39584209 - L2a LINE L2 -3 3423 3199 2 1500 7043 66 27 4 chr3 120015837 120015855 -39583928 - L1Md_F2 LINE L1 -2 6580 6559 2 1500 252 0 0 0 chr3 120015855 120015883 -39583900 + (TTA)n Simple_repeat Simple_repeat 3 30 0 2 1500 29125 77 15 8 chr3 120015883 120020801 -39578982 - L1Md_F2 LINE L1 -24 6558 1607 2 1500 823 66 9 0 chr3 120020801 120020907 -39578876 - U6 snRNA snRNA 0 107 1 2 1500 22 35 0 0 chr3 120021575 120021604 -39578179 + AT_rich Low_complexity Low_complexity 1 29 0 2 1500 231 167 0 0 chr3 120021680 120021722 -39578061 + GA-rich Low_complexity Low_complexity 1 42 0 2 1500 5091 124 83 67 chr3 120022144 120022462 -39577321 - L1_Mur1 LINE L1 -285 5601 5272 2 1500 192 40 0 0 chr3 120022462 120022487 -39577296 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 2 1500 5091 124 83 67 chr3 120022487 120023221 -39576562 - L1_Mur1 LINE L1 -615 5271 4534 2 1500 4522 123 19 7 chr3 120023223 120023961 -39575822 + Lx3C LINE L1 5641 6387 -589 3 1500 10097 16 3 0 chr3 120023957 120025185 -39574598 - L1Md_T LINE L1 -529 5354 4123 3 1500 917 19 0 0 chr3 120025185 120025293 -39574490 + L1Md_T LINE L1 5478 5585 -298 3 1500 8474 29 0 2 chr3 120025294 120026287 -39573496 + L1Md_T LINE L1 5587 6577 -5 3 1500 3553 136 32 14 chr3 120026295 120026886 -39572897 + Lx3C LINE L1 6373 6974 -2 3 1500 222 191 0 0 chr3 120026895 120026942 -39572841 + GA-rich Low_complexity Low_complexity 3 49 0 3 1500 429 76 0 0 chr3 120027527 120027593 -39572190 + (CA)n Simple_repeat Simple_repeat 2 67 0 3 1500 220 327 0 0 chr3 120027596 120027651 -39572132 - MIR SINE MIR -190 72 18 3 1500 280 320 20 10 chr3 120027671 120027772 -39572011 + L2 LINE L2 2680 2781 -638 3 1500 621 202 131 12 chr3 120028097 120028257 -39571526 - MTD LTR MaLR -14 405 227 3 1500 914 50 8 0 chr3 120028258 120028378 -39571405 + (TC)n Simple_repeat Simple_repeat 1 121 0 3 1500 1923 103 38 3 chr3 120028387 120028679 -39571104 - L1_Mus3 LINE L1 -2 6636 6335 3 1500 336 118 0 0 chr3 120028686 120028737 -39571046 - B1_Mus1 SINE Alu -97 51 1 3 1500 295 192 12 82 chr3 120028737 120028755 -39571028 - B4A SINE B4 -157 135 73 4 1500 1578 174 46 0 chr3 120028755 120029037 -39570746 + RLTR27 LTR ERVK 1 295 -14 4 1500 352 50 8 0 chr3 120029053 120029106 -39570677 + MMERVK10C-int LTR ERVK 163 267 -7314 4 1500 646 243 40 54 chr3 120029112 120029334 -39570449 + MMERVK10C-int LTR ERVK 634 852 -1135 4 1500 266 237 0 0 chr3 120029448 120029524 -39570259 + MMERVK10C-int LTR ERVK 840 915 -6765 4 1500 6027 306 37 38 chr3 120030055 120034021 -39565762 + MMERVK10C-int LTR ERVK 1515 5477 -2104 4 1500 648 289 0 0 chr3 120034129 120034333 -39565450 + MMERVK10C-int LTR ERVK 6491 6694 -887 4 1500 396 325 6 6 chr3 120034455 120034616 -39565167 + MMERVK10C-int LTR ERVK 6908 7068 -513 4 1500 1431 130 27 30 chr3 120034752 120035014 -39564769 + MMERVK10C-int LTR ERVK 7321 7581 0 4 1500 1790 169 23 3 chr3 120035014 120035317 -39564466 + RLTR27 LTR ERVK 1 309 0 4 1500 540 318 87 15 chr3 120035323 120035518 -39564265 - MTD LTR MaLR -206 213 5 3 1500 184 320 0 0 chr3 120036361 120036411 -39563372 + MIRm SINE MIR 80 129 -147 4 1500 492 18 0 0 chr3 120036517 120036574 -39563209 + (TC)n Simple_repeat Simple_repeat 1 57 0 4 1500 378 0 0 0 chr3 120036574 120036615 -39563168 + (CA)n Simple_repeat Simple_repeat 1 42 0 4 1500 3380 35 2 0 chr3 120036818 120037213 -39562570 + MTA_Mm LTR MaLR 1 396 0 4 1500 477 50 0 0 chr3 120037328 120037388 -39562395 + (TA)n Simple_repeat Simple_repeat 2 61 0 4 1500 519 60 0 0 chr3 120037393 120037460 -39562323 + (CA)n Simple_repeat Simple_repeat 2 68 0 4 1500 312 246 205 0 chr3 120037507 120037629 -39562154 - ORR1E LTR MaLR 0 379 233 4 1500 396 0 0 0 chr3 120037636 120037680 -39562103 + (TG)n Simple_repeat Simple_repeat 2 45 0 5 1500 335 305 11 0 chr3 120037687 120037782 -39562001 - ORR1E LTR MaLR -262 97 2 4 1500 396 192 0 0 chr3 120038458 120038557 -39561226 + (CATA)n Simple_repeat Simple_repeat 2 100 0 5 1500 788 118 15 0 chr3 120039485 120039620 -39560163 + (TTTC)n Simple_repeat Simple_repeat 4 140 0 5 1500 327 286 103 31 chr3 120040219 120040433 -39559350 + L1M2 LINE L1 4048 4275 -1868 5 1500 423 0 0 0 chr3 120040491 120040538 -39559245 + (GA)n Simple_repeat Simple_repeat 2 48 0 5 1500 1979 287 40 15 chr3 120040613 120041282 -39558501 + Lx8 LINE L1 6101 6786 -687 5 1500 814 141 6 33 chr3 120042407 120042590 -39557193 + CT-rich Low_complexity Low_complexity 3 180 0 5 1500 264 59 0 0 chr3 120044541 120044575 -39555208 + (CCTA)n Simple_repeat Simple_repeat 2 35 0 5 1500 22 35 0 0 chr3 120046612 120046641 -39553142 + AT_rich Low_complexity Low_complexity 1 29 0 5 1500 281 207 11 0 chr3 120046702 120046789 -39552994 + (CA)n Simple_repeat Simple_repeat 1 88 0 5 1500 337 251 25 22 chr3 120046809 120047135 -39552648 + (CATA)n Simple_repeat Simple_repeat 1 327 0 6 1500 223 217 18 28 chr3 120047108 120047217 -39552566 + (CA)n Simple_repeat Simple_repeat 1 108 0 6 1500 340 257 40 0 chr3 120047303 120047482 -39552301 + (CA)n Simple_repeat Simple_repeat 1 186 0 6 1500 330 230 18 25 chr3 120047524 120047804 -39551979 + (CA)n Simple_repeat Simple_repeat 1 277 0 6 1500 439 247 16 60 chr3 120047743 120047984 -39551799 + (CATA)n Simple_repeat Simple_repeat 1 230 0 6 1500 792 221 0 0 chr3 120048160 120048300 -39551483 - B1_Mur2 SINE Alu -2 147 8 6 1500 349 314 56 14 chr3 120048758 120048900 -39550883 + B1F SINE Alu 1 148 -1 6 1500 328 327 6 18 chr3 120048946 120049114 -39550669 + (TG)n Simple_repeat Simple_repeat 1 166 0 6 1500 307 149 0 0 chr3 120049122 120049169 -39550614 - HAL1-3A_ME LINE L1 -836 2022 1976 6 1500 387 0 0 0 chr3 120049190 120049233 -39550550 + (TC)n Simple_repeat Simple_repeat 2 44 0 6 1500 29 0 0 0 chr3 120049586 120049615 -39550168 + AT_rich Low_complexity Low_complexity 1 29 0 6 1500 227 267 56 158 chr3 120049966 120050162 -39549621 - RLTR43A LTR ERVK 0 364 189 7 1500 3242 51 2 2 chr3 120052300 120052696 -39547087 - MTA_Mm LTR MaLR 0 396 1 7 1500 228 327 65 26 chr3 120053644 120053798 -39545985 + L1MC4a LINE L1 5796 5955 -1927 7 1500 11578 172 43 34 chr3 120055044 120058216 -39541567 + Lx5 LINE L1 2890 6105 -1355 7 1500 1242 64 0 0 chr3 120058216 120058436 -39541347 + (GA)n Simple_repeat Simple_repeat 1 220 0 7 1500 2425 201 43 18 chr3 120058436 120058644 -39541139 + Lx5 LINE L1 6106 6361 -689 7 1500 401 363 16 8 chr3 120060150 120060275 -39539508 - MER2 DNA MER2_type -8 337 212 7 1500 262 312 26 0 chr3 120060294 120060371 -39539412 - ID4_ SINE ID -4 79 1 7 1500 505 226 37 15 chr3 120060371 120060502 -39539281 - MER2 DNA MER2_type -125 220 87 7 1500 256 102 41 0 chr3 120060658 120060707 -39539076 + (TTTA)n Simple_repeat Simple_repeat 3 53 0 7 1500 2564 190 50 19 chr3 120060709 120061251 -39538532 - Lx5 LINE L1 0 7050 6492 7 1500 197 0 71 0 chr3 120061551 120061579 -39538204 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 7 1501 422 237 10 10 chr3 120062004 120062102 -39537681 + MIR3 SINE MIR 108 205 -3 8 1501 927 301 32 32 chr3 120062408 120062686 -39537097 - B4 SINE B4 -4 288 11 8 1501 372 22 0 0 chr3 120064098 120064143 -39535640 + (TG)n Simple_repeat Simple_repeat 1 45 0 8 1501 6057 55 1 3 chr3 120064602 120065354 -39534429 + L1Md_F2 LINE L1 5832 6582 0 8 1501 824 259 23 5 chr3 120066295 120066512 -39533271 - URR1B DNA MER1_type -3 222 2 8 1501 318 101 67 42 chr3 120066532 120066697 -39533086 + (TA)n Simple_repeat Simple_repeat 2 170 0 8 1501 800 228 70 35 chr3 120067760 120067929 -39531854 + B3 SINE B2 1 176 -40 8 1501 1147 71 24 0 chr3 120067929 120068098 -39531685 + (TAGA)n Simple_repeat Simple_repeat 2 174 0 8 1501 198 103 0 0 chr3 120068098 120068127 -39531656 + (TG)n Simple_repeat Simple_repeat 2 30 0 8 1501 800 228 70 35 chr3 120068127 120068156 -39531627 + B3 SINE B2 177 206 -10 8 1501 21 0 0 0 chr3 120068160 120068181 -39531602 + AT_rich Low_complexity Low_complexity 1 21 0 8 1501 561 316 44 9 chr3 120069184 120069411 -39530372 - MIR SINE MIR 0 262 28 9 1501 514 271 119 10 chr3 120069832 120070026 -39529757 + B3 SINE B2 2 216 0 9 1501 315 212 24 48 chr3 120070105 120070189 -39529594 - RLTR14 LTR ERV1 -3 379 298 9 1501 456 139 0 0 chr3 120070189 120070268 -39529515 + (CA)n Simple_repeat Simple_repeat 2 80 0 9 1501 359 286 134 0 chr3 120070608 120070727 -39529056 - ID_B1 SINE B4 -28 196 62 9 1501 236 222 0 14 chr3 120070838 120070911 -39528872 + (TTA)n Simple_repeat Simple_repeat 2 73 0 9 1501 6742 51 10 7 chr3 120071461 120072349 -39527434 - L1Md_F2 LINE L1 0 6582 5692 9 1501 244 33 47 62 chr3 120072360 120072424 -39527359 + (TTTTG)n Simple_repeat Simple_repeat 3 65 0 9 1501 1238 54 0 0 chr3 120072424 120072571 -39527212 - B1_Mm SINE Alu 0 147 1 9 1501 358 320 16 8 chr3 120072777 120072900 -39526883 + B3A SINE B2 1 124 -74 9 1501 23 33 0 0 chr3 120073061 120073091 -39526692 + AT_rich Low_complexity Low_complexity 1 30 0 1 1501 607 308 31 73 chr3 120074054 120074313 -39525470 - B4A SINE B4 -37 255 8 1 1501 242 263 44 48 chr3 120074547 120074650 -39525133 + B1F SINE Alu 9 109 -11 1 1501 213 208 39 0 chr3 120074667 120074744 -39525039 + GA-rich Low_complexity Low_complexity 3 82 0 1 1501 210 143 0 0 chr3 120074755 120074790 -39524993 + (CATA)n Simple_repeat Simple_repeat 4 38 0 1 1501 669 157 0 0 chr3 120074791 120074963 -39524820 + GA-rich Low_complexity Low_complexity 2 173 0 1 1501 237 314 123 44 chr3 120075256 120075459 -39524324 + L2c LINE L2 3108 3326 -61 1 1501 443 355 74 8 chr3 120075509 120075753 -39524030 - MIR SINE MIR 0 262 3 1 1501 339 268 66 82 chr3 120079850 120079972 -39519811 - RSINE1 SINE B4 0 165 46 1 1501 961 40 0 0 chr3 120079987 120080113 -39519670 - L1Md_T LINE L1 0 6582 6457 1 1501 288 0 0 0 chr3 120080209 120080241 -39519542 + (TG)n Simple_repeat Simple_repeat 2 33 0 1 1501 231 36 0 0 chr3 120080241 120080269 -39519514 + (TTG)n Simple_repeat Simple_repeat 2 29 0 1 1501 822 245 48 61 chr3 120080652 120080882 -39518901 - B4A SINE B4 -60 232 6 1 1501 232 312 104 71 chr3 120080973 120081270 -39518513 - RMER17C LTR ERVK -38 372 66 1 1501 2175 218 42 19 chr3 120081365 120082000 -39517783 + Lx2B LINE L1 6324 6994 -3 1 1501 949 277 80 51 chr3 120082793 120083143 -39516640 - MLT1A0 LTR MaLR 0 365 6 1 1501 222 350 37 74 chr3 120083385 120083493 -39516290 - L2b LINE L2 -19 3356 3253 1 1501 217 27 0 75 chr3 120083935 120083975 -39515808 + (CAAAAA)n Simple_repeat Simple_repeat 2 38 0 1 1501 256 272 92 65 chr3 120084145 120084330 -39515453 - B2_Mm2 SINE B2 -4 191 2 1 1501 602 338 13 6 chr3 120084174 120084332 -39515451 - RSINE1 SINE B4 -6 159 1 1 1501 342 340 26 65 chr3 120085212 120085366 -39514417 - MLT1A LTR MaLR -226 148 1 1 1501 486 0 0 0 chr3 120085670 120085724 -39514059 + (TA)n Simple_repeat Simple_repeat 2 55 0 1 1501 438 289 0 10 chr3 120085861 120085959 -39513824 + RSINE1 SINE B4 44 140 -25 1 1501 366 107 0 0 chr3 120085961 120086017 -39513766 + (CA)n Simple_repeat Simple_repeat 2 57 0 1 1501 194 330 78 26 chr3 120086185 120086300 -39513483 - MIRb SINE MIR -108 160 40 1 1501 248 160 0 26 chr3 120086625 120086702 -39513081 + (CAGA)n Simple_repeat Simple_repeat 2 76 0 1 1501 1205 34 14 30 chr3 120087034 120087399 -39512384 + (GAAA)n Simple_repeat Simple_repeat 1 359 0 1 1501 822 166 0 0 chr3 120087415 120087566 -39512217 + GA-rich Low_complexity Low_complexity 2 152 0 1 1501 461 32 16 0 chr3 120088746 120088809 -39510974 + (CA)n Simple_repeat Simple_repeat 2 65 0 1 1501 235 231 25 25 chr3 120088882 120088962 -39510821 + (CATATA)n Simple_repeat Simple_repeat 4 83 0 1 1501 216 217 21 21 chr3 120088968 120089015 -39510768 + B1_Mus2 SINE Alu 13 59 -88 1 1501 371 268 11 11 chr3 120089069 120089156 -39510627 + B1_Mur2 SINE Alu 63 149 0 1 1501 537 249 152 0 chr3 120089357 120089534 -39510249 - MER2 DNA MER2_type -58 287 84 1 1501 481 362 0 7 chr3 120089575 120089714 -39510069 + RSINE1 SINE B4 11 148 -17 1 1501 24 0 0 0 chr3 120089924 120089948 -39509835 + AT_rich Low_complexity Low_complexity 1 24 0 1 1501 36459 41 0 3 chr3 120092835 120099058 -39500725 - L1Md_T LINE L1 0 6585 285 1 1501 2443 173 74 139 chr3 120099063 120099796 -39499987 + RMER6C LTR ERVK 4 688 -2 1 1501 761 266 94 15 chr3 120100051 120100318 -39499465 + B4A SINE B4 1 288 -4 1 1501 333 0 0 0 chr3 120100381 120100418 -39499365 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 1501 222 167 53 53 chr3 120102347 120102461 -39497322 + (TATAG)n Simple_repeat Simple_repeat 4 117 0 1 1501 36 23 0 0 chr3 120102494 120102537 -39497246 + AT_rich Low_complexity Low_complexity 1 43 0 1 1501 527 78 13 0 chr3 120103256 120103333 -39496450 + (GAAAA)n Simple_repeat Simple_repeat 2 79 0 1 1501 266 0 29 0 chr3 120103466 120103500 -39496283 + (TTG)n Simple_repeat Simple_repeat 2 36 0 1 1501 180 217 0 0 chr3 120103711 120103757 -39496026 + (TG)n Simple_repeat Simple_repeat 1 46 0 1 1501 494 287 84 66 chr3 120103773 120104060 -39495723 - B4 SINE B4 0 292 1 1 1501 290 250 72 27 chr3 120104276 120104387 -39495396 + HAL1b LINE L1 1048 1163 -846 1 1501 3980 92 81 102 chr3 120104936 120105208 -39494575 - Lx3_Mus LINE L1 -638 6371 6075 1 1501 552 15 0 0 chr3 120105208 120105273 -39494510 + (CCA)n Simple_repeat Simple_repeat 1 65 0 1 1501 3980 77 69 37 chr3 120105273 120105998 -39493785 - Lx3_Mus LINE L1 -935 6074 5394 1 1501 4741 82 5 8 chr3 120105998 120106639 -39493144 + Lx3_Mus LINE L1 6371 7009 0 1 1501 759 317 3 14 chr3 120106815 120107077 -39492706 + L1_Rod LINE L1 5552 5812 -35 1 1501 1674 42 0 5 chr3 120107077 120107294 -39492489 + L1Md_F2 LINE L1 6366 6581 -1 1 1501 759 317 3 14 chr3 120107294 120107328 -39492455 + L1_Rod LINE L1 5813 5845 -2 1 1501 366 335 236 28 chr3 120107721 120108332 -39491451 - L1MDa LINE L1 -1769 4768 4031 1 1501 359 271 44 15 chr3 120108577 120108712 -39491071 - L1MDa LINE L1 -4384 2249 2111 1 1501 258 250 50 0 chr3 120108712 120108772 -39491011 + polypurine Low_complexity Low_complexity 5 67 0 1 1501 373 335 85 58 chr3 120108775 120109035 -39490748 - L1MDa LINE L1 -4498 2135 1869 1 1501 607 86 12 62 chr3 120109037 120109126 -39490657 + T-rich Low_complexity Low_complexity 68 155 0 1 1501 1081 82 7 7 chr3 120109126 120109273 -39490510 - B1_Mus1 SINE Alu -1 147 1 1 1501 607 86 12 62 chr3 120109273 120109345 -39490438 + T-rich Low_complexity Low_complexity 2 67 0 1 1501 594 287 119 14 chr3 120109345 120109765 -39490018 - L1MDa LINE L1 -4754 1879 1416 1 1501 3156 246 43 50 chr3 120109826 120110849 -39488934 + Lx9 LINE L1 6622 7637 -7 1 1501 301 306 14 0 chr3 120110996 120111068 -39488715 - RSINE1 SINE B4 -1 164 92 1 1501 379 237 26 0 chr3 120111142 120111218 -39488565 - B4A SINE B4 -173 119 42 1 1501 403 325 50 6 chr3 120111595 120111935 -39487848 + L1M3 LINE L1 4306 4660 -1480 1 1501 735 10 0 10 chr3 120111938 120112037 -39487746 - L1Md_T LINE L1 0 6582 6485 1 1501 267 360 29 41 chr3 120112103 120112234 -39487549 - L1MDa LINE L1 -6387 246 118 1 1501 351 0 0 0 chr3 120112234 120112273 -39487510 + (TG)n Simple_repeat Simple_repeat 1 39 0 1 1501 267 360 29 41 chr3 120112273 120112312 -39487471 - L1MDa LINE L1 -6516 117 78 1 1501 630 255 122 42 chr3 120113160 120113237 -39486546 - ORR1D2 LTR MaLR -3 367 270 1 1501 243 0 0 0 chr3 120113237 120113264 -39486519 + (GA)n Simple_repeat Simple_repeat 1 27 0 1 1501 630 255 122 42 chr3 120113264 120113522 -39486261 - ORR1D2 LTR MaLR -101 269 6 1 1501 540 286 0 0 chr3 120113587 120113727 -39486056 - B1F1 SINE Alu -9 140 1 1 1501 5305 74 13 0 chr3 120113761 120114460 -39485323 - L1_Mus3 LINE L1 -225 6413 5706 1 1501 1102 80 12 6 chr3 120114462 120114655 -39485128 + L1_Mus3 LINE L1 6460 6638 0 1 1501 189 0 0 0 chr3 120114742 120114763 -39485020 + (CAAAAA)n Simple_repeat Simple_repeat 2 22 0 1 1501 1486 206 117 26 chr3 120115589 120115906 -39483877 + MTD LTR MaLR 1 350 -69 1 1501 348 24 0 0 chr3 120115906 120115947 -39483836 + (CAAAA)n Simple_repeat Simple_repeat 2 42 0 1 1501 1486 206 117 26 chr3 120115947 120116013 -39483770 + MTD LTR MaLR 351 418 -1 1 1501 189 197 121 84 chr3 120116133 120116216 -39483567 + L3 LINE CR1 722 807 -3682 1 1501 183 114 0 0 chr3 120116389 120116424 -39483359 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1 1501 1136 314 39 8 chr3 120116478 120116841 -39482942 - MTEa LTR MaLR -5 374 1 1 1501 21 0 0 0 chr3 120117251 120117272 -39482511 + AT_rich Low_complexity Low_complexity 1 21 0 1 1501 695 120 8 0 chr3 120117348 120117465 -39482318 + (CA)n Simple_repeat Simple_repeat 2 119 0 1 1501 237 238 16 0 chr3 120119321 120119384 -39480399 + (TTCA)n Simple_repeat Simple_repeat 3 66 0 1 1501 276 261 67 22 chr3 120120551 120120641 -39479142 + URR1A DNA MER1_type 77 170 -56 1 1501 493 294 56 0 chr3 120120643 120120786 -39478997 - B4A SINE B4 -18 274 124 1 1501 337 153 28 0 chr3 120120793 120120865 -39478918 + CT-rich Low_complexity Low_complexity 2 75 0 1 1501 411 21 0 0 chr3 120120972 120121020 -39478763 + (TAAA)n Simple_repeat Simple_repeat 2 49 0 1 1501 350 52 17 0 chr3 120121493 120121551 -39478232 + L1Md_F2 LINE L1 6524 6582 0 1 1501 342 0 0 0 chr3 120121605 120121643 -39478140 + (TTTTA)n Simple_repeat Simple_repeat 2 39 0 1 1501 366 308 0 16 chr3 120122099 120122222 -39477561 + MTD LTR MaLR 43 160 -259 1 1501 629 182 66 0 chr3 120122282 120122403 -39477380 + MTD LTR MaLR 291 419 0 1 1501 262 149 29 15 chr3 120122427 120122495 -39477288 + (CATA)n Simple_repeat Simple_repeat 4 72 0 1 1501 639 152 0 0 chr3 120123230 120123342 -39476441 + (TG)n Simple_repeat Simple_repeat 2 113 0 1 1501 21 0 0 0 chr3 120124125 120124146 -39475637 + AT_rich Low_complexity Low_complexity 1 21 0 1 1501 398 261 94 36 chr3 120124205 120124418 -39475365 - L1MA5A LINE L1 -448 5852 5586 1 1501 339 331 40 53 chr3 120124447 120124464 -39475319 - ID_B1 SINE B4 -2 222 148 1 1501 432 328 17 0 chr3 120124464 120124583 -39475200 - B1F1 SINE Alu -26 123 3 1 1501 339 331 40 53 chr3 120124583 120124597 -39475186 - ID_B1 SINE B4 -2 147 75 1 1501 640 307 61 17 chr3 120124665 120125243 -39474540 - L1MA5A LINE L1 -792 5508 4901 1 1501 366 300 27 0 chr3 120125270 120125390 -39474393 - L1MA5A LINE L1 -1312 4828 4673 1 1501 23 0 0 0 chr3 120125436 120125459 -39474324 + AT_rich Low_complexity Low_complexity 1 23 0 1 1501 29 0 0 0 chr3 120125659 120125688 -39474095 + AT_rich Low_complexity Low_complexity 1 29 0 1 1501 251 340 0 0 chr3 120125714 120125811 -39473972 + A-rich Low_complexity Low_complexity 4 100 0 1 1501 824 318 123 19 chr3 120125821 120126244 -39473539 - Lx8 LINE L1 -52 7421 6955 1 1501 1253 189 67 23 chr3 120126266 120126671 -39473112 + Lx4B LINE L1 6523 7040 -18 1 1501 24 53 0 0 chr3 120126685 120126723 -39473060 + AT_rich Low_complexity Low_complexity 1 38 0 1 1501 338 294 48 14 chr3 120126723 120126868 -39472915 - Lx7 LINE L1 -772 6924 6775 1 1501 409 257 0 103 chr3 120126953 120127079 -39472704 + PB1D10 SINE Alu 3 115 -2 1 1501 24 0 0 0 chr3 120127708 120127732 -39472051 + AT_rich Low_complexity Low_complexity 1 24 0 1 1501 281 340 39 10 chr3 120128085 120128189 -39471594 + MTEa LTR MaLR 1 107 -272 1 1501 287 345 73 45 chr3 120128274 120128453 -39471330 + MT2A LTR ERVL 212 395 -138 1 1501 633 73 0 0 chr3 120129938 120130034 -39469749 + (GA)n Simple_repeat Simple_repeat 2 97 0 1 1501 534 31 0 0 chr3 120130034 120130098 -39469685 + (GGA)n Simple_repeat Simple_repeat 2 65 0 2 1501 1085 83 7 0 chr3 120130184 120130329 -39469454 + B1_Mus2 SINE Alu 2 147 0 2 1501 207 0 0 0 chr3 120130329 120130352 -39469431 + (A)n Simple_repeat Simple_repeat 1 23 0 2 1501 1108 71 0 0 chr3 120130366 120130506 -39469277 + B1_Mus2 SINE Alu 1 140 -7 2 1501 217 0 61 0 chr3 120130506 120130539 -39469244 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 2 1501 228 236 0 18 chr3 120130717 120130773 -39469010 + (TG)n Simple_repeat Simple_repeat 2 56 0 2 1501 609 296 52 45 chr3 120130776 120131063 -39468720 - B4 SINE B4 0 292 4 2 1501 3309 35 2 8 chr3 120131674 120132072 -39467711 - MTA_Mm LTR MaLR 0 396 1 2 1501 222 37 0 0 chr3 120132711 120132738 -39467045 + (TG)n Simple_repeat Simple_repeat 2 28 0 2 1501 216 0 0 0 chr3 120132738 120132761 -39467022 + (TA)n Simple_repeat Simple_repeat 1 24 0 2 1501 257 274 8 96 chr3 120135222 120135347 -39464436 + L1MD3 LINE L1 6465 6578 -1417 2 1501 670 269 164 70 chr3 120135453 120136165 -39463618 - L1MA6 LINE L1 -74 6408 5630 2 1501 316 293 101 0 chr3 120136240 120136339 -39463444 - B4A SINE B4 -6 286 178 2 1501 345 298 29 58 chr3 120136350 120136489 -39463294 - B4A SINE B4 -157 135 1 2 1501 1421 271 114 63 chr3 120136501 120136759 -39463024 - L1MA6 LINE L1 -733 5613 5353 2 1501 234 0 0 0 chr3 120136759 120136785 -39462998 + (TTTG)n Simple_repeat Simple_repeat 1 26 0 2 1501 1421 279 106 120 chr3 120136785 120137449 -39462334 - L1MA6 LINE L1 -973 5352 4745 2 1501 450 0 0 0 chr3 120137449 120137499 -39462284 + (TAGA)n Simple_repeat Simple_repeat 3 52 0 2 1501 1421 279 106 120 chr3 120137499 120137782 -39462001 - L1MA6 LINE L1 -1581 4744 4447 2 1501 342 333 39 20 chr3 120137782 120137935 -39461848 - RSINE1 SINE B4 -8 157 2 2 1501 1421 279 106 120 chr3 120137935 120138709 -39461074 - L1MA6 LINE L1 -1879 4446 3653 2 1501 1193 288 33 28 chr3 120138711 120139075 -39460708 - MTEb LTR MaLR -7 372 7 2 1501 363 292 168 7 chr3 120139090 120139376 -39460407 - L1MA6 LINE L1 -2673 3652 3321 2 1501 21 0 0 0 chr3 120139480 120139501 -39460282 + AT_rich Low_complexity Low_complexity 1 21 0 2 1501 342 330 54 49 chr3 120139544 120139729 -39460054 - L1MEf LINE L1 -4557 1643 1458 2 1501 1002 229 0 5 chr3 120139757 120139963 -39459820 - B3 SINE B2 -11 205 1 2 1501 267 299 63 35 chr3 120140379 120140698 -39459085 - L1MA6 LINE L1 -4094 1234 907 2 1501 396 0 0 0 chr3 120140729 120140773 -39459010 + (TG)n Simple_repeat Simple_repeat 1 44 0 2 1501 389 253 53 0 chr3 120140774 120140869 -39458914 - RSINE1 SINE B4 -63 102 3 2 1501 246 32 0 0 chr3 120141872 120141903 -39457880 + (TGG)n Simple_repeat Simple_repeat 1 31 0 2 1501 251 232 0 0 chr3 120142744 120142800 -39456983 + A-rich Low_complexity Low_complexity 1 56 0 2 1501 1421 305 62 31 chr3 120143642 120144403 -39455380 - L1MC1 LINE L1 -18 6315 5532 2 1501 2055 64 213 0 chr3 120144424 120144752 -39455031 - L1_Mus3 LINE L1 -383 6255 5858 2 1501 1388 77 43 0 chr3 120144752 120144960 -39454823 + L1_Mus3 LINE L1 6416 6632 -6 2 1501 299 299 66 41 chr3 120145432 120145554 -39454229 - RSINE1 SINE B4 -38 127 3 2 1501 206 300 114 0 chr3 120145978 120146048 -39453735 - MIRc SINE MIR -63 205 128 2 1501 500 310 12 12 chr3 120147295 120147455 -39452328 - RSINE1 SINE B4 -2 163 4 2 1501 606 286 31 5 chr3 120147552 120147745 -39452038 - Tigger5 DNA MER2_type -36 2370 2173 2 1501 531 307 124 16 chr3 120147858 120148100 -39451683 - MLT2D LTR ERVL -105 309 42 2 1501 1630 139 61 14 chr3 120148223 120148391 -39451392 + Lx2 LINE L1 6699 6866 -131 2 1501 183 80 0 0 chr3 120148391 120148416 -39451367 + (TGGG)n Simple_repeat Simple_repeat 1 25 0 2 1501 1630 139 61 14 chr3 120148416 120148524 -39451259 + Lx2 LINE L1 6867 6986 -11 2 1501 209 157 19 19 chr3 120149168 120149220 -39450563 + (TTG)n Simple_repeat Simple_repeat 2 53 0 2 1501 1410 153 97 161 chr3 120149406 120149536 -39450247 + MTB_Mm LTR MaLR 1 108 -299 2 1501 1139 75 0 0 chr3 120149536 120149682 -39450101 - B1_Mus2 SINE Alu 0 147 2 2 1501 1410 153 97 161 chr3 120149682 120149986 -39449797 + MTB_Mm LTR MaLR 109 407 0 2 1501 235 253 11 44 chr3 120150527 120150618 -39449165 + (TATG)n Simple_repeat Simple_repeat 3 90 0 2 1501 262 279 29 29 chr3 120150620 120150690 -39449093 - RSINE1 SINE B4 -8 157 88 2 1501 208 147 0 0 chr3 120150700 120150734 -39449049 + (TTAA)n Simple_repeat Simple_repeat 1 34 0 2 1501 432 309 3 0 chr3 120150734 120150836 -39448947 - B1F SINE Alu -8 112 8 2 1501 189 0 0 0 chr3 120150902 120150923 -39448860 + (TTTTTG)n Simple_repeat Simple_repeat 2 22 0 2 1501 406 321 22 7 chr3 120151713 120151848 -39447935 - Lx8 LINE L1 -362 7111 6975 2 1501 216 0 0 0 chr3 120152520 120152544 -39447239 + (A)n Simple_repeat Simple_repeat 1 24 0 2 1501 422 343 0 0 chr3 120152774 120152917 -39446866 - RSINE1 SINE B4 -19 146 4 2 1501 369 0 0 0 chr3 120153420 120153461 -39446322 + (CA)n Simple_repeat Simple_repeat 2 42 0 2 1501 396 0 0 0 chr3 120153461 120153504 -39446279 + (GA)n Simple_repeat Simple_repeat 2 45 0 2 1501 1590 191 92 0 chr3 120155134 120155470 -39444313 - ORR1B2 LTR MaLR 0 367 1 2 1501 344 362 19 13 chr3 120155523 120155677 -39444106 + L2 LINE L2 2524 2678 -741 2 1501 5172 59 65 0 chr3 120155732 120156406 -39443377 - L1_Mus1 LINE L1 0 6567 5850 2 1501 198 0 0 0 chr3 120156417 120156439 -39443344 + (T)n Simple_repeat Simple_repeat 1 22 0 2 1501 201 147 0 0 chr3 120156675 120156709 -39443074 + (TA)n Simple_repeat Simple_repeat 1 34 0 2 1501 1395 67 17 0 chr3 120156953 120157132 -39442651 + B2_Mm2 SINE B2 1 182 -13 2 1501 328 281 110 17 chr3 120157168 120157429 -39442354 + L1M4 LINE L1 5186 5482 -862 2 1501 1017 234 10 5 chr3 120157695 120157897 -39441886 + B3 SINE B2 13 215 -1 2 1501 276 200 79 61 chr3 120158724 120158889 -39440894 + (ATATG)n Simple_repeat Simple_repeat 2 169 0 2 1501 23 0 0 0 chr3 120159130 120159153 -39440630 + AT_rich Low_complexity Low_complexity 1 23 0 2 1501 451 247 5 9 chr3 120159469 120159698 -39440085 + (TA)n Simple_repeat Simple_repeat 1 227 0 2 1501 585 246 33 49 chr3 120161983 120162167 -39437616 + B3A SINE B2 1 181 -17 2 1501 504 252 87 40 chr3 120162717 120162866 -39436917 + RSINE1 SINE B4 8 163 -2 2 1501 23 54 0 0 chr3 120162868 120162905 -39436878 + AT_rich Low_complexity Low_complexity 1 37 0 2 1501 567 43 0 0 chr3 120163524 120163594 -39436189 + (TC)n Simple_repeat Simple_repeat 1 70 0 2 1501 483 48 0 0 chr3 120163594 120163656 -39436127 + (CA)n Simple_repeat Simple_repeat 1 62 0 2 1501 410 128 0 37 chr3 120164404 120164485 -39435298 + (TA)n Simple_repeat Simple_repeat 2 79 0 2 1501 952 278 127 11 chr3 120164944 120165278 -39434505 - MTEb LTR MaLR -5 365 4 2 1501 5307 104 51 4 chr3 120166192 120167414 -39432369 - L1Md_F2 LINE L1 -197 6385 5084 2 1501 1061 116 6 0 chr3 120167414 120167578 -39432205 + L1_Mus1 LINE L1 6402 6566 -1 2 1501 1175 269 39 36 chr3 120167708 120168098 -39431685 + Lx8 LINE L1 7081 7471 -2 2 1501 484 312 0 28 chr3 120168152 120168294 -39431489 - B4 SINE B4 -43 249 112 2 1501 2670 141 131 17 chr3 120168309 120168834 -39430949 - RMER4B LTR ERVK 0 585 1 2 1501 308 311 0 0 chr3 120169196 120169270 -39430513 - B4 SINE B4 -216 76 3 2 1501 515 290 164 42 chr3 120170280 120170505 -39429278 + RMER15 LTR ERVL 265 531 -44 2 1501 387 0 0 0 chr3 120170505 120170548 -39429235 + (TG)n Simple_repeat Simple_repeat 1 43 0 2 1501 515 290 164 42 chr3 120170548 120170585 -39429198 + RMER15 LTR ERVL 532 559 -16 2 1501 269 239 54 54 chr3 120170809 120170902 -39428881 + MIR SINE MIR 92 184 -78 2 1501 190 152 29 29 chr3 120170981 120171049 -39428734 + (CAGAGA)n Simple_repeat Simple_repeat 3 70 0 2 1501 285 29 0 0 chr3 120171058 120171092 -39428691 + (TAGA)n Simple_repeat Simple_repeat 2 35 0 2 1501 261 0 0 0 chr3 120171186 120171215 -39428568 + (TGGA)n Simple_repeat Simple_repeat 4 32 0 2 1501 256 315 18 9 chr3 120172287 120172399 -39427384 - L1MA4 LINE L1 -361 5939 5827 2 1501 595 279 41 142 chr3 120172490 120172807 -39426976 + B4 SINE B4 2 286 -6 2 1501 468 35 0 0 chr3 120172872 120172930 -39426853 + (CA)n Simple_repeat Simple_repeat 1 58 0 2 1501 719 278 34 11 chr3 120173650 120173825 -39425958 - B3A SINE B2 -16 182 4 2 1501 216 281 9 150 chr3 120173880 120173993 -39425790 + L2c LINE L2 3281 3377 -10 2 1501 21 0 0 0 chr3 120174797 120174818 -39424965 + AT_rich Low_complexity Low_complexity 1 21 0 2 1501 189 107 0 0 chr3 120176396 120176424 -39423359 + (A)n Simple_repeat Simple_repeat 1 28 0 2 1501 203 241 0 0 chr3 120176447 120176505 -39423278 + (CA)n Simple_repeat Simple_repeat 2 59 0 2 1501 200 185 19 0 chr3 120178347 120178401 -39421382 + GA-rich Low_complexity Low_complexity 2 56 0 2 1501 181 309 98 12 chr3 120178446 120178528 -39421255 - L2c LINE L2 -17 3370 3282 2 1501 243 389 41 22 chr3 120179065 120179336 -39420447 + B4A SINE B4 5 280 -12 2 1501 465 50 0 0 chr3 120179405 120179465 -39420318 + (CA)n Simple_repeat Simple_repeat 1 60 0 2 1501 192 40 0 0 chr3 120179625 120179650 -39420133 + (CA)n Simple_repeat Simple_repeat 2 26 0 2 1501 22 35 0 0 chr3 120180006 120180035 -39419748 + AT_rich Low_complexity Low_complexity 1 29 0 2 1501 21 0 0 0 chr3 120180879 120180900 -39418883 + AT_rich Low_complexity Low_complexity 1 21 0 2 1501 213 373 85 24 chr3 120182773 120182938 -39416845 - MIRb SINE MIR -41 227 53 2 1501 2893 52 76 0 chr3 120183170 120183538 -39416245 - MTA_Mm LTR MaLR 0 396 1 2 1501 904 282 150 12 chr3 120183776 120184096 -39415687 + MTE2b LTR MaLR 1 364 -15 2 1501 346 194 117 34 chr3 120184111 120184209 -39415574 + MTD LTR MaLR 310 418 -3 2 1501 814 170 67 0 chr3 120184313 120184448 -39415335 - B1_Mus2 SINE Alu 0 147 4 2 1501 359 89 18 0 chr3 120184528 120184584 -39415199 + (TTCC)n Simple_repeat Simple_repeat 4 60 0 2 1501 327 96 0 0 chr3 120184589 120184641 -39415142 + (TC)n Simple_repeat Simple_repeat 1 52 0 2 1501 780 261 127 48 chr3 120184641 120184971 -39414812 - Lx6 LINE L1 0 7460 7105 2 1501 826 258 125 15 chr3 120184959 120185362 -39414421 + Lx5 LINE L1 6116 6788 -672 2 1501 497 303 79 0 chr3 120185390 120185555 -39414228 - MTC LTR MaLR -205 216 38 2 1501 351 0 0 0 chr3 120185555 120185594 -39414189 + (TG)n Simple_repeat Simple_repeat 1 39 0 3 1501 497 303 79 0 chr3 120185594 120185606 -39414177 - MTC LTR MaLR -384 37 26 2 1501 1123 172 197 91 chr3 120185655 120185975 -39413808 - ORR1B1 LTR MaLR 0 394 41 3 1501 393 306 39 8 chr3 120186761 120187021 -39412762 + L1MA9 LINE L1 6005 6272 -40 3 1501 517 325 62 0 chr3 120187257 120187451 -39412332 + Zaphod DNA Tip100 428 633 -3398 3 1501 238 318 118 7 chr3 120187457 120187609 -39412174 + Zaphod DNA Tip100 3863 4031 0 3 1501 351 0 0 0 chr3 120187745 120187784 -39411999 + (CA)n Simple_repeat Simple_repeat 2 40 0 3 1501 837 257 9 18 chr3 120188457 120188675 -39411108 + B3 SINE B2 1 216 0 3 1501 197 316 34 34 chr3 120188682 120188800 -39410983 - L2a LINE L2 -251 3175 3058 3 1501 363 278 69 68 chr3 120189593 120189804 -39409979 + MIRb SINE MIR 13 221 -41 3 1501 291 54 0 0 chr3 120191128 120191165 -39408618 + (GAAAA)n Simple_repeat Simple_repeat 4 40 0 3 1501 425 280 6 112 chr3 120192213 120192374 -39407409 - B1F SINE Alu -5 144 1 3 1501 402 204 0 0 chr3 120192437 120192525 -39407258 + (TA)n Simple_repeat Simple_repeat 2 89 0 3 1502 189 0 0 0 chr3 120193565 120193586 -39406197 + (A)n Simple_repeat Simple_repeat 1 21 0 3 1502 542 241 123 7 chr3 120193773 120193919 -39405864 + RSINE1 SINE B4 3 165 0 3 1502 339 202 31 41 chr3 120194294 120194377 -39405406 + Lx7 LINE L1 7209 7293 -403 3 1502 477 34 0 0 chr3 120194377 120194436 -39405347 + (CA)n Simple_repeat Simple_repeat 2 60 0 3 1502 339 202 31 41 chr3 120194436 120194450 -39405333 + Lx7 LINE L1 7294 7305 -391 3 1502 449 268 12 78 chr3 120194465 120194631 -39405152 + MER46C DNA MER2_type 105 259 -79 3 1502 24 0 0 0 chr3 120194920 120194944 -39404839 + AT_rich Low_complexity Low_complexity 1 24 0 3 1502 221 193 17 17 chr3 120196335 120196393 -39403390 + (CA)n Simple_repeat Simple_repeat 1 58 0 3 1502 198 0 0 0 chr3 120196405 120196427 -39403356 + (TA)n Simple_repeat Simple_repeat 2 23 0 3 1502 314 330 0 11 chr3 120196698 120196790 -39402993 + B1F SINE Alu 1 91 -58 3 1502 418 325 93 62 chr3 120196951 120197210 -39402573 + B4 SINE B4 3 269 -23 3 1502 557 287 6 35 chr3 120197945 120198115 -39401668 - RSINE1 SINE B4 0 165 1 3 1502 184 255 21 0 chr3 120198338 120198385 -39401398 + L2b LINE L2 3328 3375 0 3 1502 197 380 42 42 chr3 120198421 120198539 -39401244 + MIRb SINE MIR 92 209 -59 3 1502 28 29 0 0 chr3 120198578 120198613 -39401170 + AT_rich Low_complexity Low_complexity 1 35 0 3 1502 276 30 0 0 chr3 120199191 120199224 -39400559 + (GA)n Simple_repeat Simple_repeat 1 33 0 3 1502 292 333 9 0 chr3 120199285 120199393 -39400390 + PB1D10 SINE Alu 1 109 -8 3 1502 329 311 35 20 chr3 120199456 120199653 -39400130 + L1M5 LINE L1 5628 5827 -352 3 1502 468 369 31 19 chr3 120199988 120200148 -39399635 - RSINE1 SINE B4 0 165 4 3 1502 21 0 0 0 chr3 120200219 120200240 -39399543 + AT_rich Low_complexity Low_complexity 1 21 0 3 1502 354 190 30 10 chr3 120202974 120203075 -39396708 + CT-rich Low_complexity Low_complexity 6 108 0 3 1502 228 295 0 11 chr3 120203218 120203307 -39396476 - L1MA4A LINE L1 -5 6298 6211 3 1502 1390 230 41 63 chr3 120203311 120203678 -39396105 + MTE2b LTR MaLR 3 361 -18 3 1502 417 239 103 125 chr3 120203898 120204059 -39395724 - L1PB4 LINE L1 -232 5924 5783 3 1502 192 125 0 0 chr3 120204059 120204091 -39395692 + (TG)n Simple_repeat Simple_repeat 1 32 0 3 1502 417 239 103 125 chr3 120204091 120204288 -39395495 - L1PB4 LINE L1 -374 5782 5574 3 1502 264 135 0 0 chr3 120204407 120204444 -39395339 + U2 snRNA snRNA 1 37 -151 3 1502 828 303 36 33 chr3 120204531 120204771 -39395012 + MTE2b LTR MaLR 1 243 -136 3 1502 472 100 0 0 chr3 120204771 120204851 -39394932 - L1Md_F2 LINE L1 -1 6581 6502 3 1502 828 303 36 33 chr3 120204851 120204886 -39394897 + MTE2b LTR MaLR 244 276 -103 3 1502 1174 208 61 71 chr3 120204886 120205229 -39394554 - LTRIS5 LTR ERV1 0 447 74 3 1502 671 83 9 18 chr3 120205241 120205351 -39394432 - L1_Mus1 LINE L1 -66 6501 6393 3 1502 1634 69 0 0 chr3 120205349 120205566 -39394217 - L1_Mus1 LINE L1 -278 6289 6073 3 1502 420 295 9 18 chr3 120205566 120205680 -39394103 + MTE2b LTR MaLR 229 341 -38 3 1502 328 200 0 0 chr3 120205681 120205736 -39394047 + MT2A LTR ERVL 368 422 -111 3 1502 657 58 0 0 chr3 120205772 120205859 -39393924 - MusHAL1 LINE L1 -1367 1345 1259 3 1502 5863 151 37 9 chr3 120205857 120206700 -39393083 + L1_Mus4 LINE L1 3973 4852 -1031 3 1502 2370 104 150 0 chr3 120206700 120207066 -39392717 + BGLII_Mus LTR ERVK 1 421 -1 3 1502 5863 151 37 9 chr3 120207066 120207350 -39392433 + L1_Mus4 LINE L1 4853 5132 -751 3 1502 7325 108 5 2 chr3 120207950 120209466 -39390317 + L1_Mus4 LINE L1 5109 6630 -6 3 1502 4289 44 4 2 chr3 120209468 120209992 -39389791 - L1Md_F3 LINE L1 -1 6583 6059 3 1502 354 316 98 27 chr3 120210033 120210257 -39389526 + L1ME2 LINE L1 5819 6058 -106 3 1502 804 241 86 33 chr3 120210276 120210699 -39389084 + MT2B LTR ERVL 6 556 -45 3 1502 270 0 0 0 chr3 120210986 120211016 -39388767 + (T)n Simple_repeat Simple_repeat 1 30 0 3 1502 42 65 0 0 chr3 120211391 120211468 -39388315 + AT_rich Low_complexity Low_complexity 1 77 0 3 1502 729 295 16 5 chr3 120214538 120214729 -39385054 - MER58A DNA MER1_type -31 193 1 3 1502 351 289 115 52 chr3 120214773 120215025 -39384758 - L1MEc LINE L1 -1852 4467 4200 3 1502 301 299 18 18 chr3 120215181 120215290 -39384493 - L1ME3 LINE L1 -19 6145 6037 3 1502 357 332 52 43 chr3 120215420 120215653 -39384130 - L1ME3 LINE L1 -292 5870 5636 3 1502 394 312 61 40 chr3 120215663 120215910 -39383873 - L1MEc LINE L1 -3090 3229 2978 3 1502 4494 133 55 6 chr3 120215947 120216678 -39383105 - Lx2B LINE L1 -4 6996 6230 3 1502 657 270 82 0 chr3 120216886 120217045 -39382738 - B4 SINE B4 -34 258 87 3 1502 744 141 11 6 chr3 120217047 120217225 -39382558 + (TG)n Simple_repeat Simple_repeat 2 180 0 3 1502 620 153 0 7 chr3 120217239 120217377 -39382406 + (TG)n Simple_repeat Simple_repeat 2 138 0 3 1502 330 237 56 3 chr3 120217377 120217478 -39382305 - B4 SINE B4 -185 107 3 3 1502 345 335 49 35 chr3 120218137 120218425 -39381358 - L1MEc LINE L1 -4256 2144 1853 3 1502 1553 157 87 19 chr3 120219485 120219796 -39379987 - Lx4A LINE L1 0 7058 6727 3 1502 1500 221 52 12 chr3 120219845 120220188 -39379595 - ORR1D1 LTR MaLR -17 357 1 3 1502 234 0 0 0 chr3 120220979 120221005 -39378778 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 3 1502 1045 86 7 0 chr3 120221201 120221340 -39378443 - ORR1A2 LTR MaLR -49 278 139 3 1502 234 0 0 0 chr3 120221498 120221524 -39378259 + (TGG)n Simple_repeat Simple_repeat 1 26 0 3 1502 210 191 0 0 chr3 120221534 120221581 -39378202 + (TG)n Simple_repeat Simple_repeat 2 48 0 3 1502 293 47 23 0 chr3 120222660 120222703 -39377080 + (TTGG)n Simple_repeat Simple_repeat 2 45 0 3 1502 231 36 0 0 chr3 120223231 120223259 -39376524 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 3 1502 834 284 69 0 chr3 120223828 120224032 -39375751 + ID_B1 SINE B4 7 224 0 3 1502 282 179 62 9 chr3 120224166 120224279 -39375504 + (TA)n Simple_repeat Simple_repeat 1 119 0 3 1502 285 290 112 71 chr3 120224369 120224692 -39375091 - L2c LINE L2 -133 3254 2919 3 1502 258 32 0 0 chr3 120224697 120224728 -39375055 + (GGGGA)n Simple_repeat Simple_repeat 2 32 0 3 1502 225 65 0 0 chr3 120225076 120225107 -39374676 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 3 1502 233 239 81 40 chr3 120225698 120225772 -39374011 - L2a LINE L2 -55 3371 3295 3 1502 304 0 87 0 chr3 120225806 120225852 -39373931 + (TTTTG)n Simple_repeat Simple_repeat 2 51 0 3 1502 626 248 56 52 chr3 120226258 120226471 -39373312 + B3 SINE B2 3 216 0 3 1502 181 202 113 139 chr3 120227440 120227555 -39372228 - MIRb SINE MIR -87 181 70 3 1502 595 354 34 0 chr3 120227810 120228016 -39371767 - MER82 DNA MER2_type -1 652 440 3 1502 268 288 201 26 chr3 120228051 120228240 -39371543 - Lx8 LINE L1 -2 7471 7250 3 1502 591 84 0 0 chr3 120228251 120228346 -39371437 + (TC)n Simple_repeat Simple_repeat 2 96 0 3 1502 1048 380 8 4 chr3 120228348 120228819 -39370964 - Lx8 LINE L1 -249 7224 6752 3 1502 454 300 87 27 chr3 120228819 120229004 -39370779 - MER82 DNA MER2_type -275 378 183 3 1502 1699 314 117 10 chr3 120229250 120229951 -39369832 + Lx8 LINE L1 6639 7414 -59 3 1502 228 311 36 29 chr3 120229959 120230098 -39369685 + Lx8 LINE L1 7334 7473 0 3 1502 283 222 175 0 chr3 120230199 120230262 -39369521 - MER82 DNA MER2_type -527 126 53 3 1502 267 294 47 70 chr3 120230295 120230423 -39369360 - L2a LINE L2 -29 3397 3273 3 1502 1356 264 48 3 chr3 120231471 120231801 -39367982 + MTE2b LTR MaLR 28 372 -7 3 1502 612 0 0 0 chr3 120232216 120232284 -39367499 + (CATATA)n Simple_repeat Simple_repeat 2 69 0 3 1502 2781 131 24 9 chr3 120233159 120233565 -39366218 - RMER6B LTR ERVK 0 461 58 3 1502 663 25 0 0 chr3 120233565 120233646 -39366137 + (GTTTG)n Simple_repeat Simple_repeat 5 85 0 3 1502 2781 131 24 9 chr3 120233646 120233693 -39366090 - RMER6B LTR ERVK -404 57 2 3 1502 346 319 120 40 chr3 120233877 120234012 -39365771 + RSINE1 SINE B4 4 156 -9 3 1502 216 0 0 0 chr3 120234012 120234036 -39365747 + (CA)n Simple_repeat Simple_repeat 1 24 0 3 1502 346 319 120 40 chr3 120234036 120234050 -39365733 + RSINE1 SINE B4 157 165 0 3 1502 663 48 0 0 chr3 120234052 120234135 -39365648 + (TAGA)n Simple_repeat Simple_repeat 4 86 0 3 1502 375 121 0 0 chr3 120236032 120236090 -39363693 + (CA)n Simple_repeat Simple_repeat 1 58 0 3 1502 252 190 0 37 chr3 120236220 120236302 -39363481 + (TG)n Simple_repeat Simple_repeat 2 80 0 3 1502 1259 321 78 25 chr3 120236457 120237671 -39362112 + L1MEf LINE L1 1420 2709 -4393 3 1502 500 347 75 33 chr3 120237730 120238395 -39361388 + L1MEf LINE L1 2974 3661 -3673 3 1502 432 0 0 0 chr3 120238423 120238471 -39361312 + (GA)n Simple_repeat Simple_repeat 1 48 0 3 1502 297 354 29 0 chr3 120238476 120238681 -39361102 - MER82 DNA MER2_type -356 297 55 3 1502 360 224 119 80 chr3 120238872 120239160 -39360623 + L1M5 LINE L1 5588 5904 -267 3 1502 1009 167 309 4 chr3 120239397 120239649 -39360134 - Lx4B LINE L1 -7 7051 6723 3 1502 25 0 0 0 chr3 120239989 120240014 -39359769 + AT_rich Low_complexity Low_complexity 1 25 0 3 1502 556 206 0 111 chr3 120240118 120240271 -39359512 - B1_Mur1 SINE Alu -12 137 2 3 1502 1057 42 20 40 chr3 120240375 120240525 -39359258 + B1_Mm SINE Alu 1 147 0 3 1502 324 231 0 0 chr3 120240525 120240603 -39359180 + A-rich Low_complexity Low_complexity 3 80 0 3 1502 219 161 179 0 chr3 120241777 120241833 -39357950 + B4A SINE B4 2 67 -225 3 1502 396 274 63 0 chr3 120241848 120241943 -39357840 + B4A SINE B4 166 266 -26 3 1502 266 0 29 0 chr3 120241945 120241979 -39357804 + (CA)n Simple_repeat Simple_repeat 1 35 0 3 1502 2656 155 59 16 chr3 120242072 120242577 -39357206 - RLTR11A2 LTR ERVK 0 527 1 3 1502 528 16 0 0 chr3 120242644 120242705 -39357078 + (GGGA)n Simple_repeat Simple_repeat 4 64 0 4 1502 21 0 0 0 chr3 120242815 120242836 -39356947 + AT_rich Low_complexity Low_complexity 1 21 0 4 1502 594 41 0 0 chr3 120242990 120243063 -39356720 + (GGAA)n Simple_repeat Simple_repeat 3 75 0 4 1502 1009 47 0 0 chr3 120243064 120243191 -39356592 + B1_Mm SINE Alu 21 147 0 4 1502 207 204 20 0 chr3 120246006 120246055 -39353728 + (TATATG)n Simple_repeat Simple_repeat 6 55 0 4 1502 442 227 6 6 chr3 120246059 120246223 -39353560 + (TA)n Simple_repeat Simple_repeat 2 165 0 4 1502 325 302 110 51 chr3 120247148 120247385 -39352398 - L1MC LINE L1 -2247 5635 5385 4 1502 26 0 0 0 chr3 120247507 120247533 -39352250 + AT_rich Low_complexity Low_complexity 1 26 0 4 1502 24 32 0 0 chr3 120248006 120248037 -39351746 + AT_rich Low_complexity Low_complexity 1 31 0 4 1502 634 273 161 39 chr3 120248103 120248732 -39351051 + L1MB7 LINE L1 5448 6138 -46 4 1502 618 209 14 48 chr3 120249793 120249939 -39349844 - Lx7 LINE L1 -1396 6300 6160 4 1502 1977 207 35 58 chr3 120250502 120250728 -39349055 - MTC LTR MaLR 0 421 209 4 1502 576 65 0 0 chr3 120250728 120250805 -39348978 + (TTA)n Simple_repeat Simple_repeat 2 78 0 4 1502 1261 49 6 0 chr3 120250810 120250974 -39348809 - L1_Mus1 LINE L1 -2 6565 6401 4 1502 1977 207 35 58 chr3 120250974 120251172 -39348611 - MTC LTR MaLR -213 208 1 4 1502 414 0 0 0 chr3 120251401 120251447 -39348336 + (TTTA)n Simple_repeat Simple_repeat 3 48 0 4 1502 1072 59 0 0 chr3 120251447 120251582 -39348201 - B1_Mus1 SINE Alu -12 136 2 4 1502 22 0 0 0 chr3 120251586 120251608 -39348175 + AT_rich Low_complexity Low_complexity 1 22 0 4 1502 396 55 0 0 chr3 120251636 120251691 -39348092 + (TTTA)n Simple_repeat Simple_repeat 2 56 0 4 1502 283 242 5 17 chr3 120251707 120251773 -39348010 - PB1D10 SINE Alu -32 88 21 4 1502 732 136 7 45 chr3 120251827 120251981 -39347802 - Lx4A LINE L1 -1 7057 6910 4 1502 241 174 0 21 chr3 120251983 120252030 -39347753 - MTC LTR MaLR -138 283 238 4 1502 354 98 0 0 chr3 120252463 120252514 -39347269 + (TC)n Simple_repeat Simple_repeat 2 52 0 4 1502 397 184 0 38 chr3 120252667 120252746 -39347037 + tRNA-Lys-AAG tRNA tRNA 1 76 0 4 1502 978 263 75 64 chr3 120252819 120253270 -39346513 - RLTR12B LTR ERVK -31 497 42 4 1502 202 218 0 18 chr3 120254335 120254391 -39345392 + A-rich Low_complexity Low_complexity 2 56 0 4 1502 483 271 226 15 chr3 120255325 120255520 -39344263 + B4 SINE B4 1 236 -56 4 1502 1604 336 110 19 chr3 120255650 120256402 -39343381 - MLT1J-int LTR MaLR -367 1020 200 4 1502 2143 129 59 3 chr3 120256534 120256908 -39342875 - L1_Mur2 LINE L1 -1339 4538 4144 4 1502 1306 233 148 33 chr3 120257303 120257662 -39342121 + MTB_Mm LTR MaLR 1 400 -7 4 1502 812 63 9 0 chr3 120258404 120258515 -39341268 + (TAGA)n Simple_repeat Simple_repeat 1 112 0 4 1502 180 312 35 44 chr3 120258747 120258861 -39340922 - L2a LINE L2 -74 3352 3240 4 1502 324 241 7 217 chr3 120259079 120259222 -39340561 - MTE2b LTR MaLR -259 120 8 4 1502 201 175 0 0 chr3 120259222 120259262 -39340521 + (TA)n Simple_repeat Simple_repeat 2 41 0 4 1502 492 18 0 0 chr3 120260672 120260729 -39339054 + (TC)n Simple_repeat Simple_repeat 1 57 0 4 1502 31360 116 15 9 chr3 120261881 120264749 -39335034 + L1_Mus3 LINE L1 468 3375 -2508 4 1502 2977 37 50 11 chr3 120264749 120265130 -39334653 - MTA_Mm LTR MaLR 0 396 1 4 1502 31360 106 7 11 chr3 120265130 120267750 -39332033 + L1_Mus3 LINE L1 3376 5952 -686 4 1502 1002 103 7 0 chr3 120267750 120267895 -39331888 + B1_Mus1 SINE Alu 3 148 0 4 1502 5757 132 63 58 chr3 120267895 120268565 -39331218 + L1_Mus3 LINE L1 5953 6638 0 4 1502 875 140 14 0 chr3 120268893 120269036 -39330747 + URR1A DNA MER1_type 79 223 -3 4 1502 270 0 0 0 chr3 120270216 120270246 -39329537 + (A)n Simple_repeat Simple_repeat 1 30 0 4 1502 450 312 76 0 chr3 120270866 120271010 -39328773 + RSINE1 SINE B4 5 159 -6 4 1502 647 269 109 11 chr3 120271890 120272074 -39327709 - B3A SINE B2 -14 202 1 4 1502 882 212 39 15 chr3 120272162 120272368 -39327415 + URR1A DNA MER1_type 1 211 -15 4 1502 750 53 0 0 chr3 120272661 120272756 -39327027 + (TC)n Simple_repeat Simple_repeat 1 95 0 4 1502 681 348 22 4 chr3 120273117 120273394 -39326389 + B4A SINE B4 1 282 -10 4 1502 279 0 0 0 chr3 120273431 120273462 -39326321 + (CA)n Simple_repeat Simple_repeat 2 32 0 4 1502 279 0 0 0 chr3 120274077 120274108 -39325675 + (CA)n Simple_repeat Simple_repeat 1 31 0 4 1502 187 333 26 26 chr3 120274760 120274837 -39324946 - L3 LINE CR1 -10 4479 4403 4 1502 259 368 21 42 chr3 120275179 120275321 -39324462 + L2b LINE L2 3220 3358 -17 4 1502 480 275 100 0 chr3 120276441 120276561 -39323222 - L2b LINE L2 -9 3366 3235 4 1502 272 258 117 0 chr3 120277090 120277294 -39322489 + L1M4 LINE L1 5201 5434 -745 4 1502 18919 132 12 11 chr3 120278276 120280029 -39319754 - L1_Mus4 LINE L1 -7 6629 4863 4 1502 3852 45 4 0 chr3 120280029 120280495 -39319288 + L1_Mus1 LINE L1 6099 6566 -1 4 1502 18919 166 24 25 chr3 120280495 120281307 -39318476 - L1_Mus4 LINE L1 -1021 4862 4091 4 1502 545 0 15 0 chr3 120281307 120281372 -39318411 + (TA)n Simple_repeat Simple_repeat 1 66 0 4 1502 270 0 0 0 chr3 120281372 120281401 -39318382 + (GA)n Simple_repeat Simple_repeat 2 31 0 4 1502 18919 166 24 25 chr3 120281401 120283022 -39316761 - L1_Mus4 LINE L1 -1793 4090 2463 4 1502 696 56 0 0 chr3 120283022 120283111 -39316672 + (TTC)n Simple_repeat Simple_repeat 2 90 0 4 1502 18919 166 24 25 chr3 120283111 120283590 -39316193 - L1_Mus4 LINE L1 -3421 2462 1965 4 1502 291 54 0 0 chr3 120283988 120284025 -39315758 + (CA)n Simple_repeat Simple_repeat 1 37 0 4 1502 195 42 0 0 chr3 120284025 120284049 -39315734 + (TG)n Simple_repeat Simple_repeat 2 25 0 4 1502 441 36 0 0 chr3 120284085 120284140 -39315643 + (TG)n Simple_repeat Simple_repeat 2 56 0 4 1502 553 58 67 9 chr3 120284358 120284463 -39315320 + (TAGA)n Simple_repeat Simple_repeat 4 114 0 4 1502 21 36 0 0 chr3 120284533 120284561 -39315222 + AT_rich Low_complexity Low_complexity 1 28 0 4 1502 551 325 24 65 chr3 120285432 120285724 -39314059 + MER34A1 LTR ERV1 48 327 -260 4 1502 2505 157 27 2 chr3 120285724 120286127 -39313656 + MTC LTR MaLR 1 413 -8 4 1502 250 229 227 9 chr3 120286612 120286722 -39313061 + LTR37A LTR ERV1 119 252 -174 4 1502 219 36 0 0 chr3 120286723 120286751 -39313032 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 4 1502 379 284 156 31 chr3 120287252 120287412 -39312371 + ID_B1 SINE B4 25 204 -20 4 1502 466 315 104 82 chr3 120287464 120287655 -39312128 - MER31A LTR ERV1 -106 379 197 4 1502 486 0 0 0 chr3 120287655 120287709 -39312074 + (GA)n Simple_repeat Simple_repeat 2 55 0 4 1502 466 325 89 85 chr3 120287709 120287878 -39311905 - MER31A LTR ERV1 -253 213 33 4 1502 260 330 37 19 chr3 120288153 120288261 -39311522 + PB1D10 SINE Alu 1 110 -7 4 1502 1023 119 6 11 chr3 120288261 120288439 -39311344 + (GAAA)n Simple_repeat Simple_repeat 2 178 0 4 1502 200 175 0 24 chr3 120290223 120290264 -39309519 - L2a LINE L2 -88 3338 3299 4 1502 224 370 88 52 chr3 120291021 120291049 -39308734 - B3 SINE B2 -1 215 15 4 1502 642 253 0 96 chr3 120291049 120291215 -39308568 - RSINE1 SINE B4 0 165 16 4 1502 403 359 52 34 chr3 120292155 120292504 -39307279 - Lx8 LINE L1 -1 7472 7118 4 1502 352 167 76 0 chr3 120293632 120293698 -39306085 + HAL1-3A_ME LINE L1 1948 2018 -840 4 1502 246 295 0 16 chr3 120293698 120293760 -39306023 + (CA)n Simple_repeat Simple_repeat 1 61 0 4 1502 455 306 24 9 chr3 120294084 120294267 -39305516 - L3b LINE CR1 -361 4147 3950 4 1502 188 356 28 37 chr3 120294430 120294538 -39305245 - L2a LINE L2 0 3426 3320 4 1502 508 316 129 126 chr3 120294653 120295225 -39304558 + MER34A1 LTR ERV1 14 587 0 4 1502 241 278 14 27 chr3 120297314 120297388 -39302395 - MER5B DNA MER1_type -102 76 4 4 1502 635 156 0 8 chr3 120297432 120297555 -39302228 + T-rich Low_complexity Low_complexity 4 125 0 4 1502 757 51 0 30 chr3 120297568 120297669 -39302114 - B1_Mm SINE Alu 0 147 50 4 1502 59 89 0 0 chr3 120297854 120298011 -39301772 + AT_rich Low_complexity Low_complexity 1 157 0 4 1502 2206 140 3 17 chr3 120298364 120298713 -39301070 + SSU-rRNA_Hsa rRNA rRNA 1000 1343 -526 4 1502 24 53 0 0 chr3 120299476 120299514 -39300269 + AT_rich Low_complexity Low_complexity 1 38 0 4 1502 2749 175 18 68 chr3 120299710 120300384 -39299399 - RMER1A Other Other -22 1008 369 4 1502 495 0 0 0 chr3 120300747 120300802 -39298981 + (TG)n Simple_repeat Simple_repeat 2 56 0 4 1502 691 42 21 0 chr3 120301035 120301130 -39298653 + (CA)n Simple_repeat Simple_repeat 2 98 0 4 1502 953 254 69 82 chr3 120301218 120301709 -39298074 - RMER15 LTR ERVL 0 575 1 4 1502 291 28 0 0 chr3 120302678 120302714 -39297069 + (TG)n Simple_repeat Simple_repeat 2 37 0 4 1502 277 270 56 0 chr3 120302824 120302913 -39296870 + Lx8 LINE L1 7177 7270 -203 4 1502 726 241 25 0 chr3 120303841 120303999 -39295784 + MTE2b LTR MaLR 20 181 -198 4 1502 323 227 483 6 chr3 120304004 120304187 -39295596 + L1M2 LINE L1 5528 5797 -494 4 1502 3078 83 2 0 chr3 120304597 120304996 -39294787 + MTB LTR MaLR 1 400 0 4 1502 180 0 83 28 chr3 120305368 120305404 -39294379 + (CAAAAA)n Simple_repeat Simple_repeat 2 39 0 4 1502 22 0 0 0 chr3 120305486 120305508 -39294275 + AT_rich Low_complexity Low_complexity 1 22 0 4 1502 532 336 128 21 chr3 120306375 120306703 -39293080 - MLT1A0 LTR MaLR 0 365 3 4 1502 1254 278 65 12 chr3 120306984 120307323 -39292460 - ORR1D2 LTR MaLR -8 362 6 4 1502 1339 309 151 47 chr3 120307442 120308289 -39291494 - MLT1A0-int LTR MaLR -42 1447 513 4 1502 1312 271 93 12 chr3 120309024 120309368 -39290415 + MTEb LTR MaLR 1 372 -7 4 1502 773 276 72 64 chr3 120309381 120309756 -39290027 + MTE2b LTR MaLR 2 379 0 4 1502 379 335 143 9 chr3 120310314 120310537 -39289246 - MLT-int LTR MaLR -173 1562 1310 4 1502 784 307 108 89 chr3 120310766 120311227 -39288556 - MLT-int LTR MaLR -761 974 505 4 1502 613 85 17 17 chr3 120311292 120311411 -39288372 + (TCTCTG)n Simple_repeat Simple_repeat 2 120 0 4 1502 423 0 0 0 chr3 120311411 120311458 -39288325 + (CA)n Simple_repeat Simple_repeat 1 47 0 5 1502 2562 220 60 172 chr3 120311575 120312717 -39287066 - RMER1B Other Other -8 1058 44 5 1502 802 306 118 45 chr3 120313017 120313510 -39286273 + Lx9 LINE L1 6942 7470 -174 5 1502 306 303 80 27 chr3 120313670 120313782 -39286001 + PB1 SINE Alu 3 120 -7 5 1502 3888 109 3 20 chr3 120313789 120314381 -39285402 + L1_Mus3 LINE L1 6053 6634 -4 5 1502 567 296 109 53 chr3 120314491 120314776 -39285007 - MLT-int LTR MaLR -1209 526 226 4 1502 359 350 100 12 chr3 120314851 120315052 -39284731 - MLT1A LTR MaLR -4 370 149 5 1502 1202 173 0 68 chr3 120315052 120315288 -39284495 + URR1B DNA MER1_type 1 220 -5 5 1502 494 143 0 11 chr3 120316761 120316853 -39282930 + GA-rich Low_complexity Low_complexity 3 93 0 5 1502 1059 117 0 0 chr3 120317183 120317345 -39282438 + (TAGA)n Simple_repeat Simple_repeat 2 163 0 5 1502 246 128 0 0 chr3 120317346 120317385 -39282398 + (CAGG)n Simple_repeat Simple_repeat 1 39 0 5 1502 1109 296 108 12 chr3 120317385 120317813 -39281970 - MLT2B1 LTR ERVL -46 474 6 5 1502 1164 265 64 45 chr3 120318314 120318737 -39281046 - MER110 LTR ERV1 -8 483 53 5 1502 1282 305 106 7 chr3 120319432 120319874 -39279909 - RCHARR1 DNA MER1_type -486 488 3 5 1502 238 205 0 0 chr3 120320004 120320043 -39279740 - MTC LTR MaLR 0 419 381 5 1502 1211 124 8 84 chr3 120320041 120320278 -39279505 - MTC LTR MaLR -201 220 2 5 1502 2189 172 5 3 chr3 120320283 120320655 -39279128 - RLTR14 LTR ERV1 -9 373 1 5 1502 456 337 28 20 chr3 120320997 120321220 -39278563 + MIRb SINE MIR 33 264 -4 5 1502 28 0 0 0 chr3 120321478 120321506 -39278277 + AT_rich Low_complexity Low_complexity 1 28 0 5 1502 1432 139 14 0 chr3 120322307 120322530 -39277253 - URR1A DNA MER1_type 0 226 1 5 1502 526 205 166 24 chr3 120322661 120322866 -39276917 - Lx9 LINE L1 -1 7643 7410 5 1503 1421 309 59 48 chr3 120324190 120324819 -39274964 + MER63C DNA AcHobo 6 641 -289 5 1503 5354 250 89 54 chr3 120324839 120326258 -39273525 - Lx6 LINE L1 0 7460 5970 5 1503 941 128 106 11 chr3 120326258 120326375 -39273408 - Lx LINE L1 0 6654 6520 5 1503 318 50 0 0 chr3 120326375 120326415 -39273368 + (CCCA)n Simple_repeat Simple_repeat 2 41 0 5 1503 941 128 106 11 chr3 120326415 120326486 -39273297 - Lx LINE L1 -135 6519 6449 5 1503 5354 250 89 54 chr3 120326486 120326813 -39272970 - Lx6 LINE L1 -1491 5969 5653 5 1503 31309 79 10 7 chr3 120326941 120332080 -39267703 + L1Md_F2 LINE L1 446 5585 -298 5 1503 7735 64 4 1 chr3 120332081 120333070 -39266713 + L1Md_F2 LINE L1 5587 6578 -4 5 1503 4095 162 81 35 chr3 120333147 120334000 -39265783 + Lx4B LINE L1 6159 7050 -8 5 1503 546 291 52 48 chr3 120333998 120334398 -39265385 + L1MB2 LINE L1 1036 1437 -4947 5 1503 2443 202 23 33 chr3 120334478 120335000 -39264783 + RMER5 LTR ERV1 3 519 -15 5 1503 522 260 76 69 chr3 120335036 120335357 -39264426 + L1MB2 LINE L1 4782 5116 -1266 5 1503 349 270 120 188 chr3 120335371 120335764 -39264019 + MTEb LTR MaLR 14 379 0 5 1503 757 286 127 40 chr3 120335764 120336855 -39262928 + L1MB2 LINE L1 5113 6301 -106 5 1503 2385 93 0 6 chr3 120336903 120337238 -39262545 + L1_Mus4 LINE L1 6296 6628 -8 5 1503 21 0 0 0 chr3 120337270 120337291 -39262492 + AT_rich Low_complexity Low_complexity 1 21 0 5 1503 678 291 57 0 chr3 120338562 120338737 -39261046 + B3A SINE B2 3 187 -11 5 1503 261 0 0 0 chr3 120338737 120338766 -39261017 + (TC)n Simple_repeat Simple_repeat 2 30 0 5 1503 555 29 0 0 chr3 120338766 120338834 -39260949 + (TG)n Simple_repeat Simple_repeat 2 70 0 5 1503 551 284 71 0 chr3 120338837 120338978 -39260805 + B3A SINE B2 37 187 -11 5 1503 585 0 0 0 chr3 120338978 120339043 -39260740 + (TC)n Simple_repeat Simple_repeat 2 66 0 5 1503 450 0 0 0 chr3 120339043 120339092 -39260691 + (TG)n Simple_repeat Simple_repeat 1 50 0 5 1503 776 254 35 0 chr3 120339100 120339269 -39260514 + B3 SINE B2 1 175 -41 5 1503 350 346 89 28 chr3 120339270 120339484 -39260299 - MLT1D LTR MaLR -247 258 32 5 1503 734 277 88 31 chr3 120341162 120341549 -39258234 + L1MC LINE L1 3841 4249 -1897 5 1503 351 192 13 0 chr3 120342158 120342236 -39257547 + L1MC LINE L1 4628 4706 -1440 5 1503 234 293 82 16 chr3 120342240 120342424 -39257359 + L1MC LINE L1 4830 5025 -1121 5 1503 609 187 0 27 chr3 120342754 120342864 -39256919 + B1_Mur3 SINE Alu 32 138 -11 5 1503 331 244 22 44 chr3 120342899 120343036 -39256747 - Lx7 LINE L1 -229 7467 7334 5 1503 330 26 0 0 chr3 120343036 120343075 -39256708 + (CA)n Simple_repeat Simple_repeat 2 40 0 5 1503 648 147 0 47 chr3 120343075 120343207 -39256576 + GA-rich Low_complexity Low_complexity 5 129 0 5 1503 1307 17 0 53 chr3 120343207 120343397 -39256386 + (GGAAA)n Simple_repeat Simple_repeat 1 180 0 5 1503 648 147 0 47 chr3 120343397 120343414 -39256369 + polypurine Low_complexity Low_complexity 130 146 0 5 1503 284 324 7 0 chr3 120343427 120343575 -39256208 + G-rich Low_complexity Low_complexity 1 149 0 5 1503 404 214 76 38 chr3 120343616 120343747 -39256036 + Lx7 LINE L1 7560 7695 -1 5 1503 21 57 0 0 chr3 120343868 120343903 -39255880 + AT_rich Low_complexity Low_complexity 1 35 0 5 1503 213 186 34 0 chr3 120343926 120343985 -39255798 + (TA)n Simple_repeat Simple_repeat 1 61 0 5 1503 302 117 33 0 chr3 120344020 120344080 -39255703 + (CAGAGA)n Simple_repeat Simple_repeat 3 64 0 5 1503 493 315 94 35 chr3 120344117 120344456 -39255327 + L1MEc LINE L1 1196 1554 -4846 5 1503 369 271 21 0 chr3 120344456 120344552 -39255231 + MTEb LTR MaLR 1 98 -281 5 1503 625 290 26 69 chr3 120344553 120344786 -39254997 + MTEb LTR MaLR 59 281 -98 5 1503 2281 215 40 36 chr3 120344801 120345326 -39254457 - RMER5 LTR ERV1 -5 529 3 5 1503 304 355 159 41 chr3 120345460 120346214 -39253569 + L2a LINE L2 1947 2789 -630 5 1503 195 344 44 37 chr3 120346223 120346359 -39253424 + L2a LINE L2 2917 3053 -366 5 1503 222 287 42 92 chr3 120346535 120346654 -39253129 + L2a LINE L2 3304 3416 -10 5 1503 320 0 25 0 chr3 120346657 120346697 -39253086 + (TGAA)n Simple_repeat Simple_repeat 3 43 0 5 1503 3490 25 0 2 chr3 120346846 120347252 -39252531 - L1Md_F2 LINE L1 -2 6580 6176 5 1503 2775 210 125 24 chr3 120348640 120348764 -39251019 - Lx9 LINE L1 -9 7635 7480 5 1503 888 82 0 0 chr3 120348764 120348886 -39250897 + (CA)n Simple_repeat Simple_repeat 2 123 0 5 1503 2775 210 125 24 chr3 120348886 120349375 -39250408 - Lx9 LINE L1 -165 7479 6972 5 1503 354 23 0 0 chr3 120349375 120349418 -39250365 + (TC)n Simple_repeat Simple_repeat 1 43 0 5 1503 2781 137 16 13 chr3 120349419 120349872 -39249911 - Lx2 LINE L1 -11 6986 6533 5 1503 2775 210 125 24 chr3 120349872 120350037 -39249746 - Lx9 LINE L1 -673 6971 6776 5 1503 653 287 47 156 chr3 120350360 120350937 -39248846 - MLT2B2 LTR ERVL 0 515 2 5 1503 460 289 123 64 chr3 120351574 120351862 -39247921 + B4 SINE B4 10 281 -11 5 1503 360 0 0 0 chr3 120352534 120352574 -39247209 + (TG)n Simple_repeat Simple_repeat 1 40 0 5 1503 27 62 0 0 chr3 120352843 120352891 -39246892 + AT_rich Low_complexity Low_complexity 1 48 0 5 1503 21 0 0 0 chr3 120353616 120353637 -39246146 + AT_rich Low_complexity Low_complexity 1 21 0 5 1503 382 297 107 7 chr3 120354370 120354519 -39245264 + B4A SINE B4 5 168 -124 5 1503 612 181 0 0 chr3 120354523 120354689 -39245094 + (CA)n Simple_repeat Simple_repeat 1 166 0 5 1503 516 209 0 0 chr3 120354706 120354878 -39244905 + (CA)n Simple_repeat Simple_repeat 2 173 0 5 1503 192 163 0 0 chr3 120354882 120354925 -39244858 + (CAGA)n Simple_repeat Simple_repeat 4 46 0 5 1503 316 329 127 101 chr3 120354970 120355484 -39244299 + LTR48B LTR ERV1 118 644 0 5 1503 242 224 39 158 chr3 120356202 120356329 -39243454 - MIRb SINE MIR -38 230 119 5 1503 216 0 0 0 chr3 120357490 120357514 -39242269 + (A)n Simple_repeat Simple_repeat 1 24 0 5 1503 206 355 103 7 chr3 120358912 120359048 -39240735 + L2a LINE L2 3276 3424 -2 5 1503 663 278 32 36 chr3 120359381 120359601 -39240182 + ID_B1 SINE B4 1 219 -5 5 1503 2165 94 0 30 chr3 120359720 120360050 -39239733 + L1Md_F2 LINE L1 6263 6582 0 5 1503 260 155 60 0 chr3 120361233 120361317 -39238466 + (CAGA)n Simple_repeat Simple_repeat 4 92 0 5 1503 288 215 36 60 chr3 120361496 120361580 -39238203 - MIRm SINE MIR -135 141 60 5 1503 369 367 9 9 chr3 120363208 120363318 -39236465 - PB1D7 SINE Alu -8 112 3 5 1503 180 0 0 0 chr3 120364127 120364147 -39235636 + (CAA)n Simple_repeat Simple_repeat 2 21 0 5 1503 3039 219 51 48 chr3 120365138 120366096 -39233687 + Lx7 LINE L1 6732 7692 -4 5 1503 644 219 147 5 chr3 120366844 120367028 -39232755 + B3 SINE B2 1 210 -6 5 1503 691 281 63 19 chr3 120368208 120368415 -39231368 + B3 SINE B2 1 216 0 5 1503 29 94 0 0 chr3 120368452 120368537 -39231246 + AT_rich Low_complexity Low_complexity 1 85 0 5 1503 216 284 80 50 chr3 120368627 120368727 -39231056 + MER5A DNA MER1_type 3 105 -84 5 1503 630 273 13 20 chr3 120369403 120369556 -39230227 - RSINE1 SINE B4 0 165 14 5 1503 297 0 0 0 chr3 120371539 120371572 -39228211 + (CA)n Simple_repeat Simple_repeat 2 34 0 5 1503 1044 161 19 43 chr3 120371663 120371871 -39227912 + B3 SINE B2 8 210 -6 5 1503 234 331 71 14 chr3 120372592 120372733 -39227050 + L2 LINE L2 1375 1523 -1896 5 1503 303 320 101 74 chr3 120372830 120373275 -39226508 + L2 LINE L2 1746 2202 -1217 5 1503 585 219 35 23 chr3 120373596 120373737 -39226046 - RLTR25B LTR ERVK -1 1027 864 5 1503 573 15 0 0 chr3 120373737 120373803 -39225980 + (TC)n Simple_repeat Simple_repeat 1 66 0 5 1503 305 128 24 249 chr3 120373803 120373936 -39225847 - RLTR25B LTR ERVK -240 863 692 5 1503 1127 171 24 2 chr3 120373916 120374192 -39225591 - ORR1A3-int LTR MaLR -997 966 633 5 1503 1241 169 88 72 chr3 120374147 120374396 -39225387 - MT2B LTR ERVL -314 287 35 5 1503 774 190 168 113 chr3 120374217 120374508 -39225275 - ORR1A3-int LTR MaLR -1157 806 500 5 1503 2152 191 45 149 chr3 120374432 120375016 -39224767 - RLTR25A LTR ERVK -580 523 1 5 1503 355 176 135 0 chr3 120375146 120375220 -39224563 + ID_B1 SINE B4 129 212 -12 5 1503 436 371 79 47 chr3 120375280 120375622 -39224161 + MER21B LTR ERV1 390 742 -121 5 1503 331 338 53 7 chr3 120375924 120376076 -39223707 - RSINE1 SINE B4 -6 159 1 5 1503 192 288 65 52 chr3 120376399 120376476 -39223307 - L3 LINE CR1 -462 4027 3950 5 1503 240 320 40 24 chr3 120376858 120376985 -39222798 + MIR SINE MIR 40 175 -93 5 1503 430 287 101 12 chr3 120377371 120377540 -39222243 - MLT1A LTR MaLR -4 370 187 5 1503 1237 290 70 33 chr3 120377857 120378470 -39221313 + L1MA7 LINE L1 5624 6259 -32 5 1503 453 214 0 0 chr3 120378477 120378561 -39221222 + B4A SINE B4 2 85 -207 5 1503 396 0 0 0 chr3 120378839 120378883 -39220900 + (TG)n Simple_repeat Simple_repeat 2 45 0 6 1503 477 138 0 0 chr3 120379981 120380061 -39219722 + (TG)n Simple_repeat Simple_repeat 2 81 0 6 1503 519 243 52 0 chr3 120380401 120380537 -39219246 + B3A SINE B2 1 143 -55 6 1503 306 0 0 0 chr3 120380548 120380582 -39219201 + (CA)n Simple_repeat Simple_repeat 1 34 0 6 1503 468 0 0 0 chr3 120380582 120380633 -39219150 + (GA)n Simple_repeat Simple_repeat 2 53 0 6 1503 230 256 48 24 chr3 120380937 120381021 -39218762 + MARNA DNA Mariner 396 481 -105 6 1503 300 111 0 0 chr3 120381027 120381072 -39218711 + (TA)n Simple_repeat Simple_repeat 2 46 0 6 1503 384 264 32 70 chr3 120383558 120383745 -39216038 + L1M2 LINE L1 5608 5787 -504 6 1503 612 267 112 34 chr3 120383756 120384023 -39215760 + B4A SINE B4 1 288 -4 6 1503 1263 105 2 0 chr3 120384065 120384495 -39215288 + (CA)n Simple_repeat Simple_repeat 1 430 0 6 1503 25 65 0 0 chr3 120385776 120385822 -39213961 + AT_rich Low_complexity Low_complexity 1 46 0 6 1503 374 324 65 0 chr3 120385909 120386048 -39213735 + MER3 DNA MER1_type 53 200 -9 6 1503 300 53 0 0 chr3 120386623 120386661 -39213122 + (CA)n Simple_repeat Simple_repeat 1 38 0 6 1503 223 163 0 0 chr3 120386662 120386705 -39213078 + (CAGAGA)n Simple_repeat Simple_repeat 4 46 0 6 1503 22 0 0 0 chr3 120386781 120386803 -39212980 + AT_rich Low_complexity Low_complexity 1 22 0 6 1503 182 370 67 8 chr3 120388201 120388321 -39211462 + MIRb SINE MIR 50 176 -92 6 1503 566 333 6 0 chr3 120388351 120388513 -39211270 + RSINE1 SINE B4 2 164 -1 6 1503 704 286 107 33 chr3 120388575 120388846 -39210937 + B4A SINE B4 2 292 0 6 1503 207 0 0 0 chr3 120388993 120389016 -39210767 + (TAAA)n Simple_repeat Simple_repeat 1 23 0 6 1503 22 56 0 0 chr3 120389024 120389060 -39210723 + AT_rich Low_complexity Low_complexity 1 36 0 6 1503 246 324 9 27 chr3 120389515 120389626 -39210157 + CT-rich Low_complexity Low_complexity 4 112 0 6 1503 453 62 0 0 chr3 120389755 120389820 -39209963 + (TG)n Simple_repeat Simple_repeat 2 66 0 6 1503 342 0 0 0 chr3 120391959 120391997 -39207786 + (TG)n Simple_repeat Simple_repeat 1 38 0 6 1503 324 0 0 0 chr3 120391997 120392032 -39207751 + (GA)n Simple_repeat Simple_repeat 1 36 0 6 1503 206 163 41 0 chr3 120392502 120392551 -39207232 + (CATA)n Simple_repeat Simple_repeat 2 52 0 6 1503 208 388 105 6 chr3 120392608 120392779 -39207004 - MER91A DNA Tip100 -7 189 2 6 1503 744 361 84 38 chr3 120392789 120393215 -39206568 + LTR16B LTR ERVL 4 449 -14 6 1503 240 338 27 48 chr3 120393255 120393401 -39206382 - MIR SINE MIR -39 223 81 6 1503 346 356 57 63 chr3 120394109 120394362 -39205421 - MIRb SINE MIR -13 255 17 6 1503 1256 221 128 18 chr3 120394607 120394863 -39204920 + ORR1D1 LTR MaLR 1 296 -78 6 1503 3079 158 88 47 chr3 120394863 120395229 -39204554 - RMER6C LTR ERVK 0 690 337 6 1503 644 0 13 0 chr3 120395229 120395305 -39204478 + (TC)n Simple_repeat Simple_repeat 2 78 0 6 1503 3079 158 88 47 chr3 120395305 120395601 -39204182 - RMER6C LTR ERVK -354 336 1 6 1503 1256 221 128 18 chr3 120395601 120395681 -39204102 + ORR1D1 LTR MaLR 297 374 0 6 1503 713 222 65 22 chr3 120396276 120396503 -39203280 + MIRb SINE MIR 33 266 -2 6 1503 24 0 0 0 chr3 120396528 120396552 -39203231 + AT_rich Low_complexity Low_complexity 1 24 0 6 1503 268 329 116 27 chr3 120396552 120396699 -39203084 - MER5A DNA MER1_type -28 161 2 6 1503 466 106 35 12 chr3 120397690 120397776 -39202007 - L1Md_F2 LINE L1 0 6582 6495 6 1503 232 325 117 0 chr3 120398776 120398853 -39200930 + MLT1A LTR MaLR 49 134 -240 6 1503 450 0 0 0 chr3 120398887 120398937 -39200846 + (TC)n Simple_repeat Simple_repeat 1 50 0 6 1503 180 0 0 0 chr3 120398937 120398956 -39200827 + (CA)n Simple_repeat Simple_repeat 1 20 0 6 1503 505 298 45 26 chr3 120399078 120399233 -39200550 + RSINE1 SINE B4 8 165 0 6 1503 25 31 0 0 chr3 120399244 120399276 -39200507 + AT_rich Low_complexity Low_complexity 1 32 0 6 1503 946 76 48 7 chr3 120399451 120399596 -39200187 + URR1B DNA MER1_type 74 224 -1 6 1503 249 33 0 0 chr3 120399742 120399772 -39200011 + (TG)n Simple_repeat Simple_repeat 1 30 0 6 1503 24 53 0 0 chr3 120400954 120400992 -39198791 + AT_rich Low_complexity Low_complexity 1 38 0 6 1503 406 295 104 98 chr3 120402646 120402943 -39196840 + ORR1E LTR MaLR 6 304 -55 6 1503 546 16 0 0 chr3 120403607 120403670 -39196113 + (TG)n Simple_repeat Simple_repeat 2 64 0 6 1503 473 281 150 53 chr3 120403670 120403877 -39195906 - B4A SINE B4 -23 269 43 6 1503 301 393 6 41 chr3 120403916 120404086 -39195697 - MLT1F LTR MaLR -384 164 1 6 1503 425 352 84 20 chr3 120404345 120404548 -39195235 - B4A SINE B4 -74 218 3 6 1503 261 0 0 0 chr3 120404731 120404760 -39195023 + (TG)n Simple_repeat Simple_repeat 2 30 0 6 1503 284 243 0 0 chr3 120406080 120406150 -39193633 + Lx9 LINE L1 7574 7643 -1 6 1503 520 322 26 32 chr3 120406615 120406832 -39192951 - B3A SINE B2 0 216 1 6 1503 419 147 39 0 chr3 120407337 120407439 -39192344 + (TTG)n Simple_repeat Simple_repeat 2 107 0 6 1503 435 319 22 0 chr3 120407490 120407628 -39192155 + MLT1A1 LTR MaLR 268 408 0 6 1503 357 323 81 12 chr3 120407638 120407876 -39191907 - L1MD LINE L1 -1086 5060 4799 6 1503 953 165 17 12 chr3 120408007 120408215 -39191568 + ORR1C1 LTR MaLR 192 394 0 6 1503 829 296 37 47 chr3 120408663 120408961 -39190822 + MER21B LTR ERV1 444 738 -125 6 1503 243 309 12 0 chr3 120409032 120409116 -39190667 + Lx6 LINE L1 251 335 -7393 6 1503 423 38 0 0 chr3 120409118 120409171 -39190612 + (TC)n Simple_repeat Simple_repeat 1 53 0 6 1503 411 80 26 39 chr3 120409173 120409251 -39190532 + L1_Mur3 LINE L1 1519 1595 -4285 6 1503 797 151 20 0 chr3 120409252 120409392 -39190391 + B2_Mm2 SINE B2 3 156 -42 6 1503 279 0 0 0 chr3 120409409 120409440 -39190343 + (TAAA)n Simple_repeat Simple_repeat 1 31 0 6 1503 204 125 0 0 chr3 120409456 120409488 -39190295 + (GGA)n Simple_repeat Simple_repeat 3 34 0 6 1503 403 151 116 0 chr3 120409502 120409588 -39190195 + L1_Mur3 LINE L1 1593 1688 -4192 6 1503 251 211 0 0 chr3 120409563 120409620 -39190163 + Lx6 LINE L1 947 1003 -6725 6 1503 5510 207 42 8 chr3 120409613 120410674 -39189109 + Lx6 LINE L1 6360 7457 -3 6 1503 187 54 26 26 chr3 120411309 120411323 -39188460 + (TAAA)n Simple_repeat Simple_repeat 2 16 0 6 1503 1219 88 0 0 chr3 120411323 120411470 -39188313 + B1_Mm SINE Alu 1 147 0 6 1503 187 54 26 26 chr3 120411470 120411493 -39188290 + (TAAA)n Simple_repeat Simple_repeat 1 23 0 6 1503 207 301 26 104 chr3 120412964 120413079 -39186704 + L2c LINE L2 3282 3387 0 6 1503 882 92 0 0 chr3 120413698 120413828 -39185955 + (GGGA)n Simple_repeat Simple_repeat 2 131 0 6 1503 644 0 13 0 chr3 120413839 120413915 -39185868 + (TAGA)n Simple_repeat Simple_repeat 2 78 0 6 1503 7554 44 8 0 chr3 120414696 120415563 -39184220 + L1Md_F2 LINE L1 5709 6582 0 6 1503 309 117 0 0 chr3 120415570 120415630 -39184153 + (CAAA)n Simple_repeat Simple_repeat 2 61 0 6 1503 1294 279 118 5 chr3 120415641 120416030 -39183753 + Lx6 LINE L1 6985 7417 -43 6 1503 7402 70 9 29 chr3 120416378 120417377 -39182406 - L1_Mus2 LINE L1 -1 6565 5587 6 1503 3171 107 0 60 chr3 120417379 120417875 -39181908 + L1_Mm LINE L1 4681 5146 -737 6 1503 687 138 0 3 chr3 120417879 120417991 -39181792 + L1_Mur1 LINE L1 4675 4783 -1097 6 1503 429 206 0 0 chr3 120417978 120418051 -39181732 - Lx2 LINE L1 -638 6359 6287 6 1503 1643 180 0 98 chr3 120418051 120418420 -39181363 + L1_Mur2 LINE L1 4604 4936 -950 6 1503 14807 42 0 125 chr3 120418439 120421575 -39178208 - L1_Mus4 LINE L1 0 6636 3893 6 1503 21846 139 106 5 chr3 120421575 120425956 -39173827 - L1VL4 LINE L1 -224 5659 823 6 1503 259 346 24 30 chr3 120426010 120426177 -39173606 - L1VL4 LINE L1 -5927 730 565 6 1503 4231 158 11 3 chr3 120426178 120426872 -39172911 + L1_Mur1 LINE L1 4926 5625 -261 6 1503 405 0 0 0 chr3 120428011 120428056 -39171727 + (TC)n Simple_repeat Simple_repeat 2 46 0 6 1503 31 26 0 0 chr3 120428277 120428315 -39171468 + AT_rich Low_complexity Low_complexity 1 38 0 6 1503 359 257 0 0 chr3 120428793 120428863 -39170920 + ID4_ SINE ID 5 74 -9 6 1503 432 0 0 0 chr3 120429521 120429569 -39170214 + (GTTTG)n Simple_repeat Simple_repeat 2 49 0 6 1503 281 222 0 0 chr3 120429575 120429629 -39170154 - L1MB7 LINE L1 -95 6089 6036 6 1503 741 264 5 76 chr3 120429640 120429837 -39169946 + B3A SINE B2 1 183 -15 6 1503 536 279 91 23 chr3 120429872 120430048 -39169735 + B3A SINE B2 10 197 -1 6 1503 495 0 0 0 chr3 120430966 120431021 -39168762 + (GA)n Simple_repeat Simple_repeat 2 56 0 6 1503 329 280 210 0 chr3 120431680 120431780 -39168003 + RSINE1 SINE B4 12 132 -33 6 1503 183 42 0 0 chr3 120431791 120431815 -39167968 + (CA)n Simple_repeat Simple_repeat 1 24 0 6 1503 438 20 0 0 chr3 120431817 120431868 -39167915 + (TAGA)n Simple_repeat Simple_repeat 2 52 0 6 1503 255 211 11 22 chr3 120432635 120432727 -39167056 + G-rich Low_complexity Low_complexity 2 92 0 6 1503 261 0 0 0 chr3 120433700 120433729 -39166054 + (TC)n Simple_repeat Simple_repeat 1 29 0 6 1503 333 0 0 0 chr3 120433729 120433765 -39166018 + (CA)n Simple_repeat Simple_repeat 1 37 0 6 1503 493 219 138 4 chr3 120434643 120434794 -39164989 - B3 SINE B2 -8 185 2 6 1503 2602 48 7 0 chr3 120434948 120435257 -39164526 + L1_Mus1 LINE L1 6257 6567 0 6 1503 427 241 40 72 chr3 120435441 120435593 -39164190 + B1F SINE Alu 3 149 0 6 1503 244 329 82 0 chr3 120435600 120435673 -39164110 + ID4_ SINE ID 1 79 -4 6 1503 208 135 0 0 chr3 120436530 120436567 -39163216 + (TTAAA)n Simple_repeat Simple_repeat 5 41 0 6 1503 847 331 15 8 chr3 120436599 120436867 -39162916 + B4 SINE B4 1 270 -22 7 1503 1417 177 72 65 chr3 120437030 120437420 -39162363 + MT2A LTR ERVL 6 542 -59 7 1503 402 21 0 0 chr3 120437420 120437467 -39162316 + (TG)n Simple_repeat Simple_repeat 2 48 0 7 1503 808 221 35 164 chr3 120437467 120437537 -39162246 + MT2A LTR ERVL 543 601 0 7 1503 38911 30 1 0 chr3 120437956 120445419 -39154364 - L1Md_T LINE L1 0 6585 1 7 1503 302 246 139 33 chr3 120445498 120445620 -39154163 - MER103 DNA DNA -24 142 8 7 1503 312 275 188 0 chr3 120446505 120446643 -39153140 - MER5A1 DNA MER1_type -1 165 2 7 1503 349 226 111 49 chr3 120448483 120448627 -39151156 + MLT1C LTR MaLR 3 155 -312 7 1503 661 104 20 14 chr3 120448671 120448817 -39150966 + (TA)n Simple_repeat Simple_repeat 2 148 0 7 1503 2845 78 0 23 chr3 120448817 120449212 -39150571 - MTB_Mm LTR MaLR -21 386 1 7 1503 614 335 39 109 chr3 120449452 120449810 -39149973 + MLT1D LTR MaLR 77 409 -96 7 1503 671 285 34 17 chr3 120449828 120450003 -39149780 - ID_B1 SINE B4 -25 199 22 7 1503 1068 256 42 90 chr3 120450077 120450454 -39149329 + MT2A LTR ERVL 3 361 -172 7 1503 874 257 24 9 chr3 120450671 120450883 -39148900 + B3 SINE B2 1 215 -1 7 1503 1057 279 97 6 chr3 120450907 120451228 -39148555 + MTD LTR MaLR 42 391 -28 7 1503 240 35 0 0 chr3 120451245 120451274 -39148509 + (TTTA)n Simple_repeat Simple_repeat 4 32 0 7 1503 192 40 0 0 chr3 120451345 120451370 -39148413 + (TAAAAA)n Simple_repeat Simple_repeat 4 28 0 7 1503 212 283 0 0 chr3 120452132 120452178 -39147605 + MIRb SINE MIR 193 238 -30 7 1503 253 246 112 56 chr3 120452256 120452381 -39147402 + MIR SINE MIR 10 141 -127 7 1503 833 275 253 35 chr3 120452850 120453177 -39146606 - RMER15 LTR ERVL -16 559 177 7 1503 315 0 39 39 chr3 120453177 120453229 -39146554 + (TTTTG)n Simple_repeat Simple_repeat 2 53 0 7 1503 833 275 253 35 chr3 120453229 120453360 -39146423 - RMER15 LTR ERVL -399 176 1 7 1503 2344 41 0 0 chr3 120453783 120454049 -39145734 - L1Md_A LINE L1 0 6582 6317 7 1503 449 262 175 18 chr3 120454334 120454505 -39145278 - B3A SINE B2 0 198 1 7 1503 297 273 75 75 chr3 120454650 120454836 -39144947 + MER53 DNA hAT 7 192 -1 7 1503 231 114 0 0 chr3 120455063 120455098 -39144685 + (GGGAGA)n Simple_repeat Simple_repeat 3 37 0 7 1504 214 343 129 29 chr3 120456109 120456319 -39143464 - L3 LINE CR1 -287 4202 3972 7 1504 22 0 0 0 chr3 120456555 120456577 -39143206 + AT_rich Low_complexity Low_complexity 1 22 0 7 1504 459 52 0 0 chr3 120456831 120456889 -39142894 + (CA)n Simple_repeat Simple_repeat 2 59 0 7 1504 30436 80 15 5 chr3 120456933 120461745 -39138038 + L1Md_F LINE L1 377 5237 -646 7 1504 551 291 56 37 chr3 120461746 120461960 -39137823 - RLTR45 LTR ERVK 0 482 265 7 1504 2757 71 0 8 chr3 120462209 120462353 -39137430 + L1Md_F2 LINE L1 5235 5376 -507 7 1504 4398 29 4 0 chr3 120462353 120462837 -39136946 - L1Md_F2 LINE L1 0 6582 6097 7 1504 2757 71 0 8 chr3 120462837 120463047 -39136736 + L1Md_F2 LINE L1 5377 5586 -297 7 1504 7508 83 24 33 chr3 120463048 120463970 -39135813 + L1Md_F2 LINE L1 5588 6481 -101 7 1504 183 80 0 0 chr3 120463970 120463995 -39135788 + (TGGG)n Simple_repeat Simple_repeat 1 25 0 7 1504 7508 83 24 33 chr3 120463995 120464076 -39135707 + L1Md_F2 LINE L1 6482 6581 -1 7 1504 231 333 66 16 chr3 120465883 120466005 -39133778 + ORSL DNA Tip100 111 238 -37 7 1504 1060 311 99 87 chr3 120466488 120467205 -39132578 - RMER13A LTR ERVK -40 820 95 7 1504 583 344 44 12 chr3 120468314 120468564 -39131219 - Tigger7 DNA MER2_type -2232 259 2 7 1504 905 292 65 8 chr3 120468565 120468827 -39130956 + B4 SINE B4 1 277 -15 7 1504 264 30 0 0 chr3 120468829 120468862 -39130921 + (CA)n Simple_repeat Simple_repeat 2 34 0 7 1504 523 284 75 0 chr3 120469592 120469726 -39130057 - RSINE1 SINE B4 -20 145 2 7 1504 817 218 66 39 chr3 120470470 120470651 -39129132 + B3 SINE B2 18 203 -13 7 1504 980 246 13 31 chr3 120472774 120473001 -39126782 + ID_B1 SINE B4 2 224 0 7 1504 497 332 14 79 chr3 120473523 120473739 -39126044 + B4A SINE B4 84 285 -7 7 1504 279 175 0 0 chr3 120473788 120473845 -39125938 + (CA)n Simple_repeat Simple_repeat 1 57 0 7 1504 225 187 140 90 chr3 120474024 120474124 -39125659 + Tigger15a DNA TcMar 131 235 -480 7 1504 360 150 41 70 chr3 120474274 120474371 -39125412 + (TA)n Simple_repeat Simple_repeat 2 99 0 7 1504 2063 107 94 0 chr3 120474371 120474670 -39125113 - ORR1A2 LTR MaLR 0 327 1 7 1504 360 150 41 70 chr3 120474670 120474686 -39125097 + (TA)n Simple_repeat Simple_repeat 1 13 0 7 1504 545 53 26 0 chr3 120474686 120474762 -39125021 + (TAGA)n Simple_repeat Simple_repeat 1 78 0 7 1504 360 150 41 70 chr3 120474762 120474819 -39124964 + (TA)n Simple_repeat Simple_repeat 1 56 0 7 1504 182 331 77 32 chr3 120474826 120474982 -39124801 + L2a LINE L2 3198 3360 -66 7 1504 253 351 30 7 chr3 120475901 120476036 -39123747 - Charlie1 DNA MER1_type 0 2781 2644 7 1504 251 289 149 0 chr3 120476040 120476161 -39123622 - Charlie1 DNA MER1_type -2567 214 76 7 1504 645 38 0 0 chr3 120476457 120476537 -39123246 + (GA)n Simple_repeat Simple_repeat 1 80 0 7 1504 843 296 36 102 chr3 120477026 120477410 -39122373 + MTE2a LTR MaLR 21 379 0 7 1504 414 0 0 0 chr3 120477544 120477590 -39122193 + (TG)n Simple_repeat Simple_repeat 2 47 0 7 1504 440 255 75 0 chr3 120477596 120477702 -39122081 - PB1D7 SINE Alu -6 114 1 7 1504 1294 79 0 11 chr3 120478957 120479136 -39120647 - ORR1B1 LTR MaLR 0 394 218 7 1504 2505 104 39 0 chr3 120479138 120479548 -39120235 - L1_Mus3 LINE L1 0 6638 6289 7 1504 934 166 111 55 chr3 120479548 120479765 -39120018 - ORR1B1 LTR MaLR -163 231 3 7 1504 236 236 116 95 chr3 120481633 120481772 -39118011 + MIRm SINE MIR 17 158 -118 7 1504 2008 177 59 3 chr3 120482883 120483037 -39116746 + ORR1C1 LTR MaLR 2 165 -213 7 1504 834 11 0 0 chr3 120483037 120483132 -39116651 + (TC)n Simple_repeat Simple_repeat 2 96 0 7 1504 2008 177 59 3 chr3 120483132 120483334 -39116449 + ORR1C1 LTR MaLR 166 377 -1 7 1504 339 171 0 0 chr3 120483394 120483470 -39116313 + (TG)n Simple_repeat Simple_repeat 2 77 0 7 1504 277 241 31 125 chr3 120485295 120485364 -39114419 + RMER21B LTR ERV1 519 578 -264 7 1504 606 28 0 0 chr3 120485364 120485436 -39114347 + (GGGA)n Simple_repeat Simple_repeat 2 73 0 7 1504 277 241 31 125 chr3 120485436 120485494 -39114289 + RMER21B LTR ERV1 579 634 -208 7 1504 296 287 97 19 chr3 120485513 120485636 -39114147 + B1F1 SINE Alu 3 138 -11 7 1504 371 73 0 18 chr3 120485636 120485692 -39114091 + (CA)n Simple_repeat Simple_repeat 2 56 0 7 1504 1244 256 115 77 chr3 120485803 120485985 -39113798 + RMER5 LTR ERV1 38 221 -313 7 1504 1824 145 26 81 chr3 120485985 120486331 -39113452 + ORR1A4 LTR MaLR 3 329 0 7 1504 1244 256 115 77 chr3 120486331 120486498 -39113285 + RMER5 LTR ERV1 222 381 -153 7 1504 279 0 0 0 chr3 120486498 120486529 -39113254 + (CA)n Simple_repeat Simple_repeat 2 32 0 7 1504 1244 256 115 77 chr3 120486529 120486647 -39113136 + RMER5 LTR ERV1 382 524 -10 7 1504 1063 249 10 5 chr3 120486778 120486984 -39112799 + B3 SINE B2 1 207 -9 7 1504 254 185 0 30 chr3 120487121 120487188 -39112595 + (CATATA)n Simple_repeat Simple_repeat 1 65 0 7 1504 362 74 19 0 chr3 120489965 120490019 -39109764 + (TTG)n Simple_repeat Simple_repeat 2 56 0 7 1504 775 239 96 0 chr3 120490033 120490230 -39109553 + B4 SINE B4 1 216 -76 7 1504 213 365 0 105 chr3 120490102 120490264 -39109519 + B1_Mur1 SINE Alu 5 149 0 7 1504 270 127 0 68 chr3 120491188 120491247 -39108536 + Lx8 LINE L1 6894 6948 -525 7 1504 243 100 0 0 chr3 120491248 120491288 -39108495 + BC1_Mm scRNA scRNA 1 40 -112 7 1504 996 258 131 30 chr3 120491344 120491701 -39108082 + Lx8 LINE L1 6938 7369 -104 7 1504 540 0 0 0 chr3 120491701 120491761 -39108022 + (TG)n Simple_repeat Simple_repeat 1 60 0 7 1504 996 278 172 32 chr3 120491761 120491866 -39107917 + Lx8 LINE L1 7370 7470 -3 7 1504 198 319 141 37 chr3 120493708 120493953 -39105830 + MIRc SINE MIR 4 268 0 7 1504 1905 184 86 19 chr3 120494151 120494572 -39105211 + Lx9 LINE L1 7196 7644 0 7 1504 277 93 37 0 chr3 120495359 120495413 -39104370 + (CA)n Simple_repeat Simple_repeat 2 57 0 7 1504 521 266 123 6 chr3 120495622 120495792 -39103991 + B4A SINE B4 35 224 -68 7 1504 270 0 0 0 chr3 120495792 120495822 -39103961 + (A)n Simple_repeat Simple_repeat 1 30 0 7 1504 182 194 0 0 chr3 120496116 120496147 -39103636 + L2b LINE L2 3328 3358 -17 7 1504 256 328 60 0 chr3 120497357 120497473 -39102310 - L1M7 LINE L1 -4783 1435 1313 7 1504 389 341 97 37 chr3 120497702 120497970 -39101813 + B4A SINE B4 2 285 -7 7 1504 330 26 0 0 chr3 120498092 120498131 -39101652 + (TA)n Simple_repeat Simple_repeat 2 40 0 7 1504 3874 155 142 7 chr3 120498190 120498947 -39100836 - RLTR25A LTR ERVK 0 1028 169 7 1504 675 0 0 0 chr3 120499257 120499332 -39100451 + (GA)n Simple_repeat Simple_repeat 1 75 0 7 1504 307 244 93 31 chr3 120499341 120499502 -39100281 + L1M5 LINE L1 3468 3638 -2508 7 1504 304 85 16 48 chr3 120499563 120499625 -39100158 + (GGGAGA)n Simple_repeat Simple_repeat 5 64 0 7 1504 270 313 64 62 chr3 120499728 120499964 -39099819 + L1ME3A LINE L1 5703 5949 -224 7 1504 262 303 40 0 chr3 120500887 120500963 -39098820 - ID4 SINE ID -1 82 4 1 1504 517 318 69 35 chr3 120500963 120501165 -39098618 + MTEb LTR MaLR 1 209 -170 2 1504 253 0 54 0 chr3 120501168 120501205 -39098578 + (TC)n Simple_repeat Simple_repeat 1 39 0 3 1504 251 324 43 77 chr3 120501205 120501223 -39098560 + MTEb LTR MaLR 201 216 -163 2 1504 579 96 0 0 chr3 120501223 120501306 -39098477 + (TA)n Simple_repeat Simple_repeat 2 84 0 4 1504 251 324 43 77 chr3 120501306 120501404 -39098379 + MTEb LTR MaLR 217 313 -66 2 1504 819 73 0 9 chr3 120501410 120501520 -39098263 + RMER10B LTR ERVL 1 109 -289 5 1504 576 0 0 0 chr3 120501523 120501587 -39098196 + (TC)n Simple_repeat Simple_repeat 1 64 0 6 1504 265 310 106 12 chr3 120501587 120501672 -39098111 - PB1 SINE Alu -25 102 10 7 1504 2103 177 13 58 chr3 120501863 120502259 -39097524 + ORR1C1 LTR MaLR 1 378 0 8 1504 214 357 24 0 chr3 120502453 120502537 -39097246 - MIRc SINE MIR -163 105 20 9 1504 1045 75 17 0 chr3 120503592 120503765 -39096018 + (TAGA)n Simple_repeat Simple_repeat 3 178 0 1 1504 4737 12 0 0 chr3 120503782 120504275 -39095508 - MT2_Mm LTR ERVL 0 493 1 1 1504 744 86 14 14 chr3 120504276 120504417 -39095366 + (TAGA)n Simple_repeat Simple_repeat 4 144 0 1 1504 1117 273 36 85 chr3 120505017 120505405 -39094378 + MTEa LTR MaLR 2 370 -9 1 1504 244 300 33 11 chr3 120506771 120506862 -39092921 + LTR33A LTR ERVL 5 97 -423 1 1504 482 350 70 26 chr3 120506895 120507124 -39092659 + LTR33A LTR ERVL 244 482 -38 1 1504 2094 67 0 7 chr3 120507443 120507712 -39092071 + L1_Mus4 LINE L1 6141 6407 -229 1 1504 516 89 0 0 chr3 120507713 120507792 -39091991 + L1_Mus4 LINE L1 6560 6638 0 1 1504 207 0 0 0 chr3 120507993 120508016 -39091767 + (CAA)n Simple_repeat Simple_repeat 2 24 0 1 1504 952 276 70 26 chr3 120508231 120508502 -39091281 + B4 SINE B4 5 287 -5 1 1504 204 89 71 0 chr3 120508544 120508600 -39091183 + (CAAA)n Simple_repeat Simple_repeat 2 61 0 1 1504 288 0 0 0 chr3 120509087 120509119 -39090664 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 1 1504 521 315 71 38 chr3 120509530 120509550 -39090233 - ID_B1 SINE B4 -1 223 209 2 1504 2908 28 61 3 chr3 120509550 120509877 -39089906 + ORR1A0 LTR MaLR 1 346 0 2 1504 521 315 71 38 chr3 120509877 120510067 -39089716 - ID_B1 SINE B4 -16 208 6 2 1504 764 189 120 0 chr3 120510079 120510254 -39089529 + ORR1C2 LTR MaLR 189 384 0 2 1504 498 75 0 0 chr3 120510719 120510786 -39088997 + (TG)n Simple_repeat Simple_repeat 1 67 0 2 1504 627 14 0 0 chr3 120510895 120510967 -39088816 + (GGAA)n Simple_repeat Simple_repeat 3 74 0 2 1504 567 0 0 0 chr3 120511318 120511381 -39088402 + (GAAA)n Simple_repeat Simple_repeat 4 66 0 2 1504 625 314 54 67 chr3 120511381 120511753 -39088030 + L1MA5 LINE L1 5668 6034 -266 2 1504 443 281 73 15 chr3 120511952 120512089 -39087694 - ORR1E LTR MaLR -209 150 6 2 1504 271 307 0 0 chr3 120514303 120514391 -39085392 + C-rich Low_complexity Low_complexity 1 88 0 2 1504 305 88 35 0 chr3 120514605 120514662 -39085121 + (TTTTTG)n Simple_repeat Simple_repeat 2 60 0 2 1504 2504 80 9 33 chr3 120517040 120517375 -39082408 - IAPLTR2b LTR ERVK 0 327 1 3 1504 346 344 48 55 chr3 120518534 120518823 -39080960 + L2a LINE L2 2658 2944 -475 3 1504 211 304 0 0 chr3 120519241 120519297 -39080486 + L2a LINE L2 3371 3426 0 3 1504 2797 59 40 5 chr3 120520082 120520457 -39079326 - MTA_Mm LTR MaLR -8 388 1 3 1504 652 203 94 0 chr3 120520569 120520689 -39079094 + B1_Mur1 SINE Alu 9 140 -9 3 1504 456 19 0 0 chr3 120520689 120520742 -39079041 + (TG)n Simple_repeat Simple_repeat 2 54 0 3 1504 579 360 60 67 chr3 120520969 120521750 -39078033 - L2a LINE L2 -263 3163 2383 3 1504 734 220 149 0 chr3 120522067 120522235 -39077548 + B3 SINE B2 23 215 -1 3 1504 387 308 172 5 chr3 120522483 120522692 -39077091 + LTR33A LTR ERVL 1 244 -551 3 1504 1403 297 130 12 chr3 120523036 120523520 -39076263 + MLT1F1 LTR MaLR 1 541 -28 3 1504 252 0 0 0 chr3 120524416 120524444 -39075339 + (TTTA)n Simple_repeat Simple_repeat 1 28 0 3 1504 1224 68 7 0 chr3 120524448 120524594 -39075189 - B1_Mus2 SINE Alu 0 147 1 4 1504 23 33 0 0 chr3 120525293 120525323 -39074460 + AT_rich Low_complexity Low_complexity 1 30 0 4 1504 391 371 81 53 chr3 120526479 120526550 -39073233 + L2a LINE L2 2971 3049 -326 4 1504 1662 132 82 33 chr3 120526550 120526855 -39072928 + RLTR46 LTR ERVK 1 320 0 4 1504 469 332 75 29 chr3 120526855 120527176 -39072607 + L2a LINE L2 3050 3425 -1 4 1504 36280 35 1 1 chr3 120528129 120534616 -39065167 + L1Md_T LINE L1 1 5589 -297 4 1504 9548 7 0 0 chr3 120534616 120535612 -39064171 + L1Md_T LINE L1 5590 6585 0 4 1504 314 200 0 30 chr3 120536083 120536150 -39063633 + L2a LINE L2 3360 3424 -2 4 1504 267 347 99 0 chr3 120536717 120536838 -39062945 - L2a LINE L2 -9 3417 3285 4 1504 245 215 202 0 chr3 120537501 120537580 -39062203 + L1MEc LINE L1 1331 1425 -4975 4 1504 306 73 0 0 chr3 120537587 120537628 -39062155 + (A)n Simple_repeat Simple_repeat 1 41 0 4 1504 286 275 30 45 chr3 120538260 120538446 -39061337 + L1MEc LINE L1 4475 4642 -1671 4 1504 838 280 71 41 chr3 120538473 120538841 -39060942 - L1M2 LINE L1 -2052 4091 3713 4 1504 833 286 111 41 chr3 120538880 120539595 -39060188 + L1ME1 LINE L1 5368 6145 -19 5 1504 364 250 176 0 chr3 120540683 120540791 -39058992 + RSINE1 SINE B4 1 127 -38 5 1504 498 83 0 0 chr3 120540795 120540867 -39058916 + (CA)n Simple_repeat Simple_repeat 1 72 0 5 1504 231 315 141 0 chr3 120541242 120541334 -39058449 - MLT1J1 LTR MaLR 0 680 576 5 1504 244 250 91 91 chr3 120541447 120541557 -39058226 - MLT1J1 LTR MaLR -167 460 351 5 1504 342 0 0 0 chr3 120541896 120541934 -39057849 + (TG)n Simple_repeat Simple_repeat 1 38 0 5 1504 312 293 28 28 chr3 120543032 120543176 -39056607 + HAL1 LINE L1 1531 1674 -833 5 1504 21 0 0 0 chr3 120543626 120543647 -39056136 + AT_rich Low_complexity Low_complexity 1 21 0 5 1504 203 81 54 0 chr3 120543707 120543744 -39056039 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 5 1504 542 335 95 38 chr3 120544275 120544539 -39055244 - MLT1J1 LTR MaLR -157 287 9 5 1504 21 36 0 0 chr3 120544543 120544571 -39055212 + AT_rich Low_complexity Low_complexity 1 28 0 5 1504 21 0 0 0 chr3 120544866 120544887 -39054896 + AT_rich Low_complexity Low_complexity 1 21 0 5 1504 416 248 34 14 chr3 120545583 120545730 -39054053 - L2 LINE L2 -2434 985 836 6 1504 630 287 75 63 chr3 120545825 120546093 -39053690 + B4 SINE B4 3 273 -19 6 1504 306 0 0 0 chr3 120546117 120546151 -39053632 + (TC)n Simple_repeat Simple_repeat 1 34 0 6 1504 601 332 22 22 chr3 120546189 120546420 -39053363 - Tigger5 DNA MER2_type -2168 238 8 6 1504 926 184 83 35 chr3 120546580 120546807 -39052976 + RMER16 LTR ERVK 1 320 -213 6 1504 682 136 0 9 chr3 120546807 120546918 -39052865 + RMER16 LTR ERVK 424 533 0 6 1504 525 305 62 0 chr3 120547591 120547768 -39052015 - B3A SINE B2 -7 191 4 6 1504 478 337 157 14 chr3 120549190 120549470 -39050313 + MLT1I LTR MaLR 4 323 -88 6 1504 264 192 0 170 chr3 120549542 120549571 -39050212 + MT2B LTR ERVL 146 223 -378 6 1504 535 31 0 0 chr3 120549571 120549636 -39050147 + B1_Mus1 SINE Alu 3 67 -81 6 1504 228 143 0 0 chr3 120549642 120549684 -39050099 + (A)n Simple_repeat Simple_repeat 1 42 0 6 1504 31733 33 3 0 chr3 120549731 120553475 -39046308 + L1Md_T LINE L1 1833 5586 -297 7 1504 9074 30 0 0 chr3 120553475 120554471 -39045312 + L1Md_T LINE L1 5587 6582 0 7 1504 24 0 0 0 chr3 120554471 120554495 -39045288 + AT_rich Low_complexity Low_complexity 1 24 0 7 1504 28 0 0 0 chr3 120554505 120554533 -39045250 + AT_rich Low_complexity Low_complexity 1 28 0 7 1504 501 17 0 0 chr3 120557115 120557173 -39042610 + (CA)n Simple_repeat Simple_repeat 2 59 0 7 1504 462 36 0 0 chr3 120558439 120558495 -39041288 + (TC)n Simple_repeat Simple_repeat 1 56 0 7 1504 546 298 104 44 chr3 120558552 120558801 -39040982 + B4 SINE B4 2 265 -27 7 1504 387 0 0 0 chr3 120558802 120558845 -39040938 + (CA)n Simple_repeat Simple_repeat 1 43 0 7 1504 246 32 0 0 chr3 120558845 120558876 -39040907 + (TTG)n Simple_repeat Simple_repeat 2 32 0 7 1504 2509 146 9 31 chr3 120558878 120559336 -39040447 - RMER6B LTR ERVK -11 450 3 7 1504 218 176 0 19 chr3 120559337 120559389 -39040394 + (CA)n Simple_repeat Simple_repeat 2 52 0 7 1504 21 0 0 0 chr3 120559389 120559410 -39040373 + AT_rich Low_complexity Low_complexity 1 21 0 8 1504 371 202 54 43 chr3 120559410 120559503 -39040280 - MLT1B LTR MaLR -294 96 3 8 1504 276 254 0 0 chr3 120559899 120559954 -39039829 + B3A SINE B2 31 85 -113 8 1504 200 0 0 91 chr3 120560526 120560559 -39039224 + (CAAAA)n Simple_repeat Simple_repeat 1 30 0 8 1504 703 258 60 90 chr3 120560657 120560824 -39038959 + B3A SINE B2 1 162 -36 8 1504 276 30 0 0 chr3 120560824 120560857 -39038926 + (CAGA)n Simple_repeat Simple_repeat 2 34 0 8 1504 474 258 60 90 chr3 120560857 120560889 -39038894 + B2_Mm2 SINE B2 158 194 -1 8 1504 34 24 0 0 chr3 120560947 120560988 -39038795 + AT_rich Low_complexity Low_complexity 1 41 0 8 1504 180 321 141 26 chr3 120561316 120561508 -39038275 + L3b LINE CR1 49 262 -220 8 1504 2586 40 56 75 chr3 120561690 120562066 -39037717 + L1_Mus1 LINE L1 6198 6566 -1 8 1504 244 324 15 0 chr3 120562809 120562877 -39036906 + ID4 SINE ID 15 83 0 8 1504 779 270 0 57 chr3 120562931 120563159 -39036624 + Lx9 LINE L1 6306 6520 -1124 9 1504 901 228 81 72 chr3 120563263 120563622 -39036161 + Lx9 LINE L1 7283 7644 0 9 1504 236 292 21 53 chr3 120564110 120564204 -39035579 - L1MA10 LINE L1 -86 6248 6158 9 1504 421 253 0 0 chr3 120565228 120565315 -39034468 + MTEb LTR MaLR 1 87 -292 9 1504 1077 142 102 109 chr3 120565317 120565601 -39034182 + RMER6B LTR ERVK 4 285 -176 9 1504 258 0 71 0 chr3 120565605 120565647 -39034136 + (TTTTTG)n Simple_repeat Simple_repeat 3 47 0 9 1504 561 148 99 0 chr3 120566263 120566364 -39033419 + RMER6B LTR ERVK 339 449 -12 9 1504 297 0 0 0 chr3 120566364 120566397 -39033386 + (TAA)n Simple_repeat Simple_repeat 1 33 0 9 1504 581 261 121 42 chr3 120566414 120566500 -39033283 + MTEb LTR MaLR 119 200 -179 9 1504 384 22 0 0 chr3 120566500 120566545 -39033238 + (TC)n Simple_repeat Simple_repeat 1 45 0 9 1504 581 261 121 42 chr3 120566545 120566698 -39033085 + MTEb LTR MaLR 201 376 -3 9 1504 237 295 121 23 chr3 120566717 120566849 -39032934 - MER58B DNA MER1_type -1 340 196 9 1504 568 301 14 72 chr3 120567155 120567363 -39032420 + B3 SINE B2 4 199 -17 9 1504 205 267 0 0 chr3 120567372 120567417 -39032366 + (CATA)n Simple_repeat Simple_repeat 2 46 0 9 1504 894 162 0 0 chr3 120567557 120567736 -39032047 + (CA)n Simple_repeat Simple_repeat 2 180 0 1 1504 219 290 148 10 chr3 120567824 120567925 -39031858 - MIR3 SINE MIR -87 121 7 1 1504 654 269 54 64 chr3 120569722 120570118 -39029665 + Lx9 LINE L1 5745 6251 -1393 1 1504 1211 19 38 22 chr3 120570201 120570519 -39029264 + (CA)n Simple_repeat Simple_repeat 1 322 0 1 1504 420 82 0 0 chr3 120570946 120571007 -39028776 + (TC)n Simple_repeat Simple_repeat 2 62 0 1 1504 231 114 0 0 chr3 120571009 120571044 -39028739 + (CA)n Simple_repeat Simple_repeat 1 35 0 1 1504 214 234 0 0 chr3 120571044 120571091 -39028692 + (CCA)n Simple_repeat Simple_repeat 1 47 0 1 1504 360 291 121 55 chr3 120571985 120572258 -39027525 - MER33 DNA MER1_type -33 291 1 1 1504 23 0 0 0 chr3 120572562 120572585 -39027198 + AT_rich Low_complexity Low_complexity 1 23 0 1 1504 582 289 89 21 chr3 120574277 120574468 -39025315 + B3A SINE B2 2 205 -11 1 1504 594 330 28 31 chr3 120574578 120574869 -39024914 + B4A SINE B4 1 290 -2 1 1504 285 282 128 15 chr3 120575491 120575624 -39024159 - L2c LINE L2 -6 3381 3234 1 1504 603 341 55 4 chr3 120576092 120576366 -39023417 - B4A SINE B4 -2 290 3 1 1504 1256 236 88 67 chr3 120576987 120577451 -39022332 + RMER19C LTR ERVK 138 611 0 1 1504 269 324 14 0 chr3 120577601 120577675 -39022108 + ID2 SINE ID 7 81 -2 1 1504 566 306 114 28 chr3 120577664 120577919 -39021864 - MLT-int LTR MaLR -274 1461 1185 1 1504 911 149 10 23 chr3 120579144 120579454 -39020329 + (TATG)n Simple_repeat Simple_repeat 1 305 0 1 1504 243 281 115 0 chr3 120580047 120580143 -39019640 + PB1D10 SINE Alu 2 108 -9 1 1504 540 0 0 0 chr3 120580199 120580259 -39019524 + (GTTTG)n Simple_repeat Simple_repeat 2 61 0 1 1504 792 309 105 5 chr3 120580892 120581358 -39018425 - L1MB7 LINE L1 -5 6179 5664 1 1504 561 284 42 81 chr3 120581370 120581521 -39018262 - L1MB7 LINE L1 -629 5549 5407 1 1504 1553 159 75 154 chr3 120581521 120581988 -39017795 + RLTR23 LTR ERV1 1 430 0 1 1504 603 243 108 24 chr3 120581988 120582237 -39017546 - L1MB7 LINE L1 -772 5406 5144 1 1504 578 284 53 46 chr3 120582295 120582557 -39017226 + RLTR18 LTR ERVK 25 288 -328 1 1504 258 276 148 114 chr3 120582683 120582920 -39016863 + RLTR18 LTR ERVK 368 612 -4 1 1504 502 93 23 0 chr3 120583395 120583481 -39016302 + (TG)n Simple_repeat Simple_repeat 1 88 0 1 1504 450 275 16 71 chr3 120583737 120583921 -39015862 - B4 SINE B4 -117 175 2 1 1504 251 228 0 0 chr3 120584033 120584090 -39015693 + (TA)n Simple_repeat Simple_repeat 1 57 0 1 1504 240 176 17 50 chr3 120584192 120584252 -39015531 + L2a LINE L2 3369 3426 0 1 1504 27 0 0 0 chr3 120585998 120586025 -39013758 + AT_rich Low_complexity Low_complexity 1 27 0 1 1504 21 0 0 0 chr3 120586103 120586124 -39013659 + AT_rich Low_complexity Low_complexity 1 21 0 1 1505 1120 84 0 0 chr3 120590682 120590824 -39008959 + B1_Mus1 SINE Alu 1 142 -6 1 1505 854 23 22 29 chr3 120590832 120590969 -39008814 + (GAGAA)n Simple_repeat Simple_repeat 5 140 0 1 1505 802 190 28 16 chr3 120591014 120591196 -39008587 + B3 SINE B2 1 184 -32 1 1505 534 70 0 0 chr3 120591197 120591268 -39008515 + (TA)n Simple_repeat Simple_repeat 1 71 0 1 1505 194 208 0 19 chr3 120591302 120591356 -39008427 + GA-rich Low_complexity Low_complexity 3 55 0 1 1505 293 0 27 0 chr3 120591854 120591891 -39007892 + (CAAAC)n Simple_repeat Simple_repeat 3 40 0 1 1505 1155 52 0 0 chr3 120592027 120592162 -39007621 - B1_Mus1 SINE Alu -9 139 5 1 1505 328 271 139 12 chr3 120592947 120593129 -39006654 + L1MA4 LINE L1 5717 5918 -238 1 1505 794 158 17 6 chr3 120593659 120593824 -39005959 + GA-rich Low_complexity Low_complexity 2 168 0 1 1505 1380 56 0 0 chr3 120593824 120594002 -39005781 + (GGAGA)n Simple_repeat Simple_repeat 3 180 0 1 1505 365 198 0 11 chr3 120594002 120594081 -39005702 + A-rich Low_complexity Low_complexity 8 86 0 1 1505 217 355 32 32 chr3 120594422 120594579 -39005204 + MIRb SINE MIR 28 184 -84 1 1505 28 0 0 0 chr3 120595117 120595145 -39004638 + AT_rich Low_complexity Low_complexity 1 28 0 1 1505 1916 135 62 45 chr3 120595518 120595716 -39004067 + RMER17C LTR ERVK 1 200 -210 1 1505 858 38 0 0 chr3 120595716 120595822 -39003961 + (TC)n Simple_repeat Simple_repeat 2 107 0 1 1505 1916 135 62 45 chr3 120595822 120596026 -39003757 + RMER17C LTR ERVK 201 410 0 1 1505 2236 213 32 56 chr3 120596042 120596630 -39003153 - Lx7 LINE L1 0 7696 7123 1 1505 994 192 21 5 chr3 120596630 120596818 -39002965 - ORR1C2 LTR MaLR -1 383 193 1 1505 728 93 0 0 chr3 120596819 120596926 -39002857 + B1_Mus2 SINE Alu 41 147 0 1 1505 558 108 0 0 chr3 120596926 120597009 -39002774 + (GAAAA)n Simple_repeat Simple_repeat 2 84 0 1 1505 713 232 44 10 chr3 120597036 120597241 -39002542 + B3 SINE B2 1 212 -4 1 1505 292 326 11 0 chr3 120597253 120597342 -39002441 + GA-rich Low_complexity Low_complexity 2 91 0 1 1505 976 136 15 23 chr3 120597368 120597555 -39002228 - ORR1C2 LTR MaLR -191 176 1 1 1505 6315 202 49 18 chr3 120597600 120599346 -39000437 - Lx7 LINE L1 -644 7052 5240 1 1505 234 62 0 0 chr3 120599346 120599378 -39000405 + (TGG)n Simple_repeat Simple_repeat 1 32 0 1 1505 540 0 0 0 chr3 120599379 120599439 -39000344 + (TTC)n Simple_repeat Simple_repeat 1 60 0 1 1505 5714 160 44 25 chr3 120599439 120599948 -38999835 - Lx7 LINE L1 -641 5239 4726 1 1505 203 333 16 33 chr3 120602023 120602144 -38997639 + MIR3 SINE MIR 76 194 -14 1 1505 192 77 0 0 chr3 120602255 120602281 -38997502 + (TATG)n Simple_repeat Simple_repeat 3 28 0 1 1505 429 216 0 11 chr3 120602965 120603054 -38996729 - MLT1A1 LTR MaLR -13 395 308 1 1505 301 308 68 20 chr3 120603207 120603353 -38996430 - MIR SINE MIR -104 158 6 1 1505 22 56 0 0 chr3 120604046 120604082 -38995701 + AT_rich Low_complexity Low_complexity 1 36 0 1 1505 3464 30 2 0 chr3 120604483 120604877 -38994906 + MTA_Mm LTR MaLR 1 395 -1 1 1505 186 209 0 0 chr3 120605418 120605461 -38994322 + (CCA)n Simple_repeat Simple_repeat 2 44 0 1 1505 837 177 169 15 chr3 120607435 120607630 -38992153 + URR1B DNA MER1_type 1 225 0 1 1505 1731 207 166 19 chr3 120607686 120608163 -38991620 - RMER19B LTR ERVK 0 902 356 1 1505 608 332 96 21 chr3 120608202 120608621 -38991162 - MT2A LTR ERVL -81 452 3 1 1505 197 114 23 0 chr3 120609749 120609770 -38990013 + (TTTG)n Simple_repeat Simple_repeat 3 24 0 1 1505 228 111 0 0 chr3 120609770 120609806 -38989977 + (TTG)n Simple_repeat Simple_repeat 1 36 0 1 1505 197 114 23 0 chr3 120609806 120609828 -38989955 + (TTTG)n Simple_repeat Simple_repeat 1 22 0 1 1505 310 311 45 76 chr3 120609851 120609879 -38989904 - B2_Mm2 SINE B2 0 195 169 1 1505 354 115 0 0 chr3 120609879 120609940 -38989843 + (TG)n Simple_repeat Simple_repeat 1 61 0 1 1505 454 311 45 76 chr3 120609940 120610109 -38989674 - B3A SINE B2 -38 178 4 1 1505 243 122 0 0 chr3 120611037 120611086 -38988697 + (A)n Simple_repeat Simple_repeat 1 49 0 1 1505 22 0 0 0 chr3 120611168 120611190 -38988593 + AT_rich Low_complexity Low_complexity 1 22 0 1 1505 1181 61 0 0 chr3 120611569 120611716 -38988067 + B1_Mus2 SINE Alu 1 147 0 1 1505 233 29 0 29 chr3 120611720 120611755 -38988028 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 1 1505 2370 134 62 12 chr3 120612202 120612603 -38987180 - MTC LTR MaLR 0 421 1 1 1505 380 376 45 9 chr3 120612756 120612979 -38986804 + MIR SINE MIR 15 245 -17 1 1505 199 0 0 61 chr3 120613742 120613775 -38986008 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 1 1505 210 118 0 0 chr3 120614297 120614331 -38985452 + (TTTG)n Simple_repeat Simple_repeat 1 34 0 1 1505 628 104 74 19 chr3 120614381 120614489 -38985294 - B1_Mus1 SINE Alu -1 147 34 1 1505 252 77 0 0 chr3 120614755 120614794 -38984989 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 1 1505 946 123 6 6 chr3 120614999 120615162 -38984621 + (TTC)n Simple_repeat Simple_repeat 1 163 0 1 1505 219 309 170 22 chr3 120615210 120615392 -38984391 + L2 LINE L2 1840 2048 -1371 1 1505 776 167 72 7 chr3 120615606 120615745 -38984038 + B1_Mur3 SINE Alu 1 148 -1 1 1505 525 32 0 0 chr3 120615749 120615812 -38983971 + (GA)n Simple_repeat Simple_repeat 1 63 0 1 1505 801 0 0 0 chr3 120615813 120615902 -38983881 + (GGAA)n Simple_repeat Simple_repeat 1 89 0 1 1505 804 289 64 4 chr3 120615902 120616138 -38983645 + Tigger7 DNA MER2_type 93 342 -2149 1 1505 308 204 0 0 chr3 120616146 120616200 -38983583 + MTEa LTR MaLR 19 72 -307 1 1505 295 158 17 17 chr3 120616205 120616263 -38983520 + MTE2b LTR MaLR 314 371 -8 1 1505 781 61 0 0 chr3 120616368 120616467 -38983316 - MTB LTR MaLR 0 400 302 1 1505 484 254 132 0 chr3 120616464 120616578 -38983205 + B3 SINE B2 65 193 -23 1 1505 672 185 6 13 chr3 120616645 120616804 -38982979 + GA-rich Low_complexity Low_complexity 2 159 0 1 1505 372 253 12 0 chr3 120616807 120616890 -38982893 + G-rich Low_complexity Low_complexity 5 88 0 1 1505 840 48 0 0 chr3 120616890 120616995 -38982788 + (GAGAA)n Simple_repeat Simple_repeat 5 109 0 1 1505 3980 153 44 5 chr3 120617218 120617881 -38981902 + RLTR17 LTR ERVK 4 692 0 1 1505 261 328 43 73 chr3 120617923 120618127 -38981656 - MIR SINE MIR -55 213 20 1 1505 298 349 94 69 chr3 120618156 120618433 -38981350 - L2b LINE L2 -19 3356 3073 1 1505 505 288 15 15 chr3 120618822 120618940 -38980843 + RSINE1 SINE B4 3 120 -45 1 1505 387 0 0 0 chr3 120618940 120618983 -38980800 + (CA)n Simple_repeat Simple_repeat 1 43 0 1 1505 505 288 15 15 chr3 120618983 120618998 -38980785 + RSINE1 SINE B4 121 136 -29 1 1505 219 328 0 0 chr3 120619155 120619222 -38980561 + GA-rich Low_complexity Low_complexity 1 67 0 1 1505 1155 102 10 6 chr3 120619381 120619562 -38980221 - Lx4A LINE L1 -249 6809 6650 1 1505 321 26 0 0 chr3 120619602 120619640 -38980143 + (TG)n Simple_repeat Simple_repeat 1 38 0 1 1505 474 49 0 0 chr3 120619640 120619700 -38980083 + (GA)n Simple_repeat Simple_repeat 1 61 0 1 1505 288 127 0 0 chr3 120621709 120621764 -38978019 + (TTTAG)n Simple_repeat Simple_repeat 3 57 0 1 1505 242 316 22 8 chr3 120621980 120622097 -38977686 + MIR SINE MIR 36 147 -121 1 1505 323 327 73 34 chr3 120622475 120622681 -38977102 + MIR SINE MIR 15 228 -34 2 1505 565 305 184 18 chr3 120622963 120623300 -38976483 + Tigger11a DNA MER2_type 232 624 -111 2 1505 1485 179 32 18 chr3 120624011 120624353 -38975430 + Lx7 LINE L1 3527 3873 -2007 2 1505 467 119 71 63 chr3 120624370 120624496 -38975287 + Lx7 LINE L1 4513 4639 -1241 2 1505 37 0 0 0 chr3 120624510 120624547 -38975236 + AT_rich Low_complexity Low_complexity 1 37 0 2 1505 39517 6 0 1 chr3 120624572 120631355 -38968428 - L1Md_A LINE L1 0 6582 1 2 1505 2222 168 50 10 chr3 120631355 120631757 -38968026 - MTC LTR MaLR -3 418 1 2 1505 4577 206 67 10 chr3 120631757 120632906 -38966877 + Lx7 LINE L1 4635 5849 -31 2 1505 2624 42 33 0 chr3 120632914 120633246 -38966537 + IAPEY_LTR LTR ERVK 43 385 0 2 1505 403 297 7 7 chr3 120633272 120633411 -38966372 + Lx7 LINE L1 5859 5997 -1699 2 1505 575 98 11 0 chr3 120633423 120633515 -38966268 + (TG)n Simple_repeat Simple_repeat 2 94 0 2 1505 220 133 0 157 chr3 120633545 120633634 -38966149 + T-rich Low_complexity Low_complexity 1 75 0 2 1505 28 61 0 0 chr3 120633712 120633761 -38966022 + AT_rich Low_complexity Low_complexity 1 49 0 2 1505 518 299 7 45 chr3 120633918 120634072 -38965711 + B4A SINE B4 143 290 -2 2 1505 775 264 11 39 chr3 120634108 120634289 -38965494 + B3 SINE B2 1 176 -40 2 1505 340 302 9 0 chr3 120634581 120634687 -38965096 + Lx7 LINE L1 5891 5997 -1699 2 1505 426 261 56 19 chr3 120635004 120635164 -38964619 - RLTR23 LTR ERV1 0 430 265 2 1505 353 374 28 81 chr3 120635461 120635784 -38963999 + HAL1 LINE L1 1140 1445 -1062 2 1505 22 35 0 0 chr3 120636013 120636042 -38963741 + AT_rich Low_complexity Low_complexity 1 29 0 2 1505 354 314 93 74 chr3 120636177 120636558 -38963225 + L1M5 LINE L1 4903 5294 -852 2 1505 396 0 0 0 chr3 120636558 120636602 -38963181 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 2 1505 354 314 93 74 chr3 120636602 120636695 -38963088 + L1M5 LINE L1 5295 5385 -761 2 1505 1085 183 68 0 chr3 120636718 120636909 -38962874 - B3 SINE B2 -11 205 2 2 1505 396 288 95 37 chr3 120637023 120637265 -38962518 + L1M5 LINE L1 5539 5794 -400 2 1505 186 242 95 16 chr3 120637457 120637520 -38962263 + L2c LINE L2 3003 3070 -317 2 1505 30 0 0 0 chr3 120637839 120637869 -38961914 + AT_rich Low_complexity Low_complexity 1 30 0 2 1505 2764 59 0 6 chr3 120640685 120641042 -38958741 - L1_Mus2 LINE L1 0 6566 6212 2 1505 756 240 32 42 chr3 120641192 120641409 -38958374 + B3 SINE B2 2 216 0 2 1505 33815 35 0 1 chr3 120641480 120647093 -38952690 + L1Md_Gf LINE L1 1 5589 -297 2 1505 9056 4 0 0 chr3 120647093 120648089 -38951694 + L1Md_T LINE L1 5587 6582 0 2 1505 33815 42 0 1 chr3 120648089 120648106 -38951677 + L1Md_Gf LINE L1 5590 5603 -283 2 1505 331 295 70 18 chr3 120648291 120648405 -38951378 + MTD LTR MaLR 1 120 -299 2 1505 240 35 0 0 chr3 120648548 120648577 -38951206 + (CA)n Simple_repeat Simple_repeat 2 30 0 2 1505 617 358 49 12 chr3 120648588 120648933 -38950850 - Lx9 LINE L1 -174 7470 7113 2 1505 1046 226 138 11 chr3 120648933 120649076 -38950707 + MTE2a LTR MaLR 59 200 -179 2 1505 198 91 0 0 chr3 120649076 120649109 -38950674 + (CATG)n Simple_repeat Simple_repeat 3 35 0 2 1505 1046 226 138 11 chr3 120649109 120649247 -38950536 + MTE2a LTR MaLR 201 376 -3 2 1505 26 30 0 0 chr3 120650660 120650693 -38949090 + AT_rich Low_complexity Low_complexity 1 33 0 2 1505 379 338 29 92 chr3 120650887 120651060 -38948723 + RSINE1 SINE B4 4 165 0 2 1505 223 177 32 0 chr3 120651182 120651244 -38948539 + (TG)n Simple_repeat Simple_repeat 1 64 0 2 1505 207 100 0 0 chr3 120651942 120651972 -38947811 + (TC)n Simple_repeat Simple_repeat 2 31 0 2 1505 222 62 0 0 chr3 120652306 120652338 -38947445 + (A)n Simple_repeat Simple_repeat 1 32 0 2 1505 279 250 109 0 chr3 120653222 120653314 -38946469 + L1MB8 LINE L1 5843 5944 -234 2 1505 1238 70 0 0 chr3 120653317 120653475 -38946308 - B2_Mm2 SINE B2 -37 158 1 2 1505 2780 66 8 24 chr3 120653609 120653984 -38945799 - L1_Mus1 LINE L1 0 6567 6199 2 1505 243 0 0 0 chr3 120654034 120654061 -38945722 + (A)n Simple_repeat Simple_repeat 1 27 0 2 1505 1452 35 0 0 chr3 120654497 120654753 -38945030 + (TAGA)n Simple_repeat Simple_repeat 1 256 0 2 1505 210 37 0 0 chr3 120654753 120654779 -38945004 + (CATA)n Simple_repeat Simple_repeat 2 28 0 2 1505 627 299 131 24 chr3 120656873 120657164 -38942619 - MLT1A0 LTR MaLR -43 322 1 2 1505 1276 280 65 25 chr3 120657364 120657720 -38942063 + MTE2b LTR MaLR 2 371 -8 2 1505 432 302 182 16 chr3 120657728 120657970 -38941813 + L1MEg LINE L1 674 955 -5129 2 1505 396 267 11 0 chr3 120658226 120658316 -38941467 + B3 SINE B2 118 208 -8 2 1505 360 315 95 27 chr3 120658367 120658514 -38941269 - MER5A1 DNA MER1_type -7 159 3 2 1505 3643 151 100 32 chr3 120658670 120659171 -38940612 + L1_Mus1 LINE L1 374 937 -5679 2 1505 221 57 29 0 chr3 120659171 120659206 -38940577 + (TTTA)n Simple_repeat Simple_repeat 1 36 0 2 1505 980 68 68 0 chr3 120659207 120659340 -38940443 - B1_Mm SINE Alu -4 143 2 2 1505 18519 169 124 7 chr3 120659340 120662006 -38937777 + L1_Mus1 LINE L1 938 4107 -1779 2 1505 5869 46 0 3 chr3 120662006 120662724 -38937059 - L1Md_F2 LINE L1 -12 6570 5855 2 1505 18519 125 82 5 chr3 120662724 120665184 -38934599 + L1_Mus1 LINE L1 4108 6567 0 2 1505 759 228 111 0 chr3 120665326 120665515 -38934268 + B3 SINE B2 2 211 -5 2 1505 470 323 25 31 chr3 120665621 120665784 -38933999 + ID_B1 SINE B4 63 224 0 2 1505 285 143 0 0 chr3 120667094 120667136 -38932647 - MTC LTR MaLR -8 411 370 2 1505 876 181 23 15 chr3 120667125 120667298 -38932485 - MTC LTR MaLR -157 264 62 2 1505 519 208 9 0 chr3 120667337 120667443 -38932340 - MTC LTR MaLR -300 107 1 2 1505 397 262 12 12 chr3 120668108 120668193 -38931590 + ID SINE ID 3 87 -137 2 1505 237 324 51 59 chr3 120668267 120668385 -38931398 - MLT1F LTR MaLR -431 117 1 2 1505 435 291 117 39 chr3 120669757 120669911 -38929872 - B3A SINE B2 -32 166 1 2 1505 855 224 85 50 chr3 120669986 120670268 -38929515 - RCHARR1 DNA MER1_type -1 973 682 2 1505 294 262 125 0 chr3 120670456 120670536 -38929247 + 5S rRNA rRNA 1 90 -31 2 1505 1177 90 6 6 chr3 120670550 120670728 -38929055 + (GGAA)n Simple_repeat Simple_repeat 3 180 0 2 1505 675 37 0 0 chr3 120670728 120670810 -38928973 + (GAAA)n Simple_repeat Simple_repeat 1 82 0 2 1505 254 337 85 19 chr3 120670949 120671055 -38928728 - MER81 DNA AcHobo -1 113 1 2 1505 401 216 56 56 chr3 120671112 120671220 -38928563 - RMER15 LTR ERVL -43 532 425 2 1505 228 309 14 29 chr3 120671378 120671448 -38928335 + ORR1D2 LTR MaLR 1 69 -290 2 1505 297 312 62 27 chr3 120671527 120671639 -38928144 + ORR1D2 LTR MaLR 61 176 -194 2 1505 339 119 0 0 chr3 120671639 120671706 -38928077 + (TC)n Simple_repeat Simple_repeat 1 67 0 2 1505 232 235 87 31 chr3 120671841 120671946 -38927837 + ORR1D2 LTR MaLR 272 375 -4 2 1505 184 30 61 0 chr3 120672302 120672335 -38927448 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 2 1505 1958 187 70 18 chr3 120673009 120673407 -38926376 + MTC LTR MaLR 3 421 0 2 1505 239 346 26 0 chr3 120674511 120674589 -38925194 + ID4_ SINE ID 3 82 -1 2 1505 205 347 0 13 chr3 120675245 120675321 -38924462 + GA-rich Low_complexity Low_complexity 1 75 0 2 1505 438 75 0 0 chr3 120675682 120675749 -38924034 + (TG)n Simple_repeat Simple_repeat 2 68 0 2 1505 411 331 28 107 chr3 120677085 120677376 -38922407 - LTR37B LTR ERV1 -86 382 115 2 1505 258 105 0 0 chr3 120677862 120677900 -38921883 + (TG)n Simple_repeat Simple_repeat 2 39 0 2 1505 2399 247 56 39 chr3 120678082 120678827 -38920956 + RCHARR1 DNA MER1_type 5 762 -212 2 1505 802 243 137 36 chr3 120678827 120678972 -38920811 + ORR1D1 LTR MaLR 3 162 -212 2 1505 549 0 0 0 chr3 120678972 120679033 -38920750 + (TC)n Simple_repeat Simple_repeat 2 62 0 2 1505 579 66 0 0 chr3 120679033 120679108 -38920675 + (TG)n Simple_repeat Simple_repeat 1 76 0 2 1505 802 243 137 36 chr3 120679108 120679209 -38920574 + ORR1D1 LTR MaLR 163 274 -100 2 1505 3434 160 28 44 chr3 120679213 120679866 -38919917 - RLTR26 LTR ERVK 0 642 1 2 1505 458 157 276 9 chr3 120679866 120679954 -38919829 + ORR1D1 LTR MaLR 266 384 0 2 1505 287 206 0 31 chr3 120679965 120680030 -38919753 + RCHARR1 DNA MER1_type 912 974 0 2 1505 3969 27 11 7 chr3 120680035 120680483 -38919300 + L1Md_F3 LINE L1 6135 6584 0 2 1505 509 281 174 39 chr3 120680485 120680893 -38918890 + Helitron1Na_Mam RC Helitron 599 1061 -1 2 1505 2625 86 47 8 chr3 120681282 120681667 -38918116 + Lx LINE L1 6250 6649 -5 2 1505 250 306 83 103 chr3 120682071 120682275 -38917508 + MER34A1 LTR ERV1 70 269 -318 2 1505 1190 271 39 10 chr3 120682284 120682590 -38917193 - ORR1E LTR MaLR -33 326 12 2 1505 543 307 82 43 chr3 120682633 120682915 -38916868 + MER34A1 LTR ERV1 293 585 -2 2 1505 969 55 0 0 chr3 120683558 120683686 -38916097 + (TG)n Simple_repeat Simple_repeat 2 129 0 2 1505 1125 213 50 69 chr3 120683712 120683989 -38915794 + MTC LTR MaLR 143 414 -7 2 1505 819 131 0 181 chr3 120684023 120684200 -38915583 + B1_Mm SINE Alu 3 147 0 2 1505 784 191 11 0 chr3 120684412 120684590 -38915193 + CT-rich Low_complexity Low_complexity 1 180 0 2 1505 516 32 0 0 chr3 120684636 120684698 -38915085 + (GA)n Simple_repeat Simple_repeat 1 62 0 2 1505 405 102 0 0 chr3 120686355 120686414 -38913369 + (T)n Simple_repeat Simple_repeat 1 59 0 2 1505 182 338 39 13 chr3 120687780 120687858 -38911925 + L2b LINE L2 3295 3374 -1 2 1505 627 51 0 0 chr3 120688107 120688186 -38911597 + (TG)n Simple_repeat Simple_repeat 2 80 0 2 1505 240 32 0 0 chr3 120688186 120688211 -38911572 + (TA)n Simple_repeat Simple_repeat 2 26 0 2 1505 424 278 188 4 chr3 120688211 120688509 -38911274 + L1ME2 LINE L1 5643 5993 -169 2 1505 261 278 119 9 chr3 120688653 120688762 -38911021 + L1M5 LINE L1 5538 5658 -466 2 1505 2318 61 40 3 chr3 120688914 120689210 -38910573 + L1Md_F3 LINE L1 6276 6582 -2 2 1505 1528 147 55 70 chr3 120689584 120689927 -38909856 + RMER5 LTR ERV1 65 402 -132 2 1505 392 231 137 25 chr3 120689938 120690061 -38909722 + MTEb LTR MaLR 229 366 -13 2 1505 2709 143 5 12 chr3 120690806 120691216 -38908567 - MTB_Mm LTR MaLR 0 407 1 2 1505 652 279 87 18 chr3 120691588 120691920 -38907863 - L1MC4 LINE L1 -425 7617 7263 2 1505 1080 242 84 42 chr3 120691959 120692339 -38907444 - L1MC4 LINE L1 -969 7073 6678 2 1505 527 211 155 8 chr3 120692561 120692690 -38907093 - B1F2 SINE Alu 0 149 2 2 1505 351 159 32 0 chr3 120692733 120692796 -38906987 - ORR1C2 LTR MaLR 0 384 320 2 1505 684 216 0 0 chr3 120692832 120692943 -38906840 + B1_Mur2 SINE Alu 28 138 -11 2 1505 423 0 0 0 chr3 120692943 120692990 -38906793 + (TA)n Simple_repeat Simple_repeat 1 47 0 3 1505 826 211 14 0 chr3 120694687 120694834 -38904949 + B1F2 SINE Alu 1 149 0 3 1505 633 135 0 0 chr3 120695003 120695129 -38904654 + (TC)n Simple_repeat Simple_repeat 1 126 0 3 1505 345 286 10 5 chr3 120695385 120695518 -38904265 + L1MC LINE L1 3749 3883 -2263 3 1505 478 328 36 68 chr3 120695522 120695741 -38904042 + B4A SINE B4 1 212 -80 3 1505 259 297 29 29 chr3 120696011 120696115 -38903668 + B4A SINE B4 179 282 -10 3 1505 264 310 14 84 chr3 120696147 120696318 -38903465 + L1MC LINE L1 3856 4017 -2129 3 1505 1056 146 0 0 chr3 120696343 120696521 -38903262 + (GAAA)n Simple_repeat Simple_repeat 3 180 0 3 1505 466 336 8 61 chr3 120696758 120697005 -38902778 + B4A SINE B4 5 238 -54 3 1505 360 0 0 0 chr3 120697050 120697090 -38902693 + (CA)n Simple_repeat Simple_repeat 1 40 0 3 1505 1320 60 58 21 chr3 120697137 120697325 -38902458 + L1Md_F2 LINE L1 6388 6582 0 3 1505 21 0 0 0 chr3 120697437 120697458 -38902325 + AT_rich Low_complexity Low_complexity 1 21 0 3 1505 315 320 40 13 chr3 120697662 120697814 -38901969 + L1MA10 LINE L1 6179 6334 0 3 1505 255 248 55 9 chr3 120698088 120698198 -38901585 + L1M4c LINE L1 1261 1375 -5009 3 1505 314 350 51 46 chr3 120698278 120698515 -38901268 + ORR1E LTR MaLR 15 252 -107 3 1505 6637 102 20 1 chr3 120698690 120699623 -38900160 + Lx LINE L1 5701 6651 -3 3 1505 293 187 0 13 chr3 120699987 120700063 -38899720 + (CA)n Simple_repeat Simple_repeat 2 76 0 3 1505 986 262 156 24 chr3 120700086 120700615 -38899168 + Lx7 LINE L1 5257 5826 -1870 3 1505 1090 117 6 6 chr3 120700701 120700881 -38898902 + (GAA)n Simple_repeat Simple_repeat 1 180 0 3 1505 360 0 0 0 chr3 120700881 120700921 -38898862 + (CAA)n Simple_repeat Simple_repeat 1 40 0 3 1505 1049 271 8 26 chr3 120701233 120701498 -38898285 + Lx5 LINE L1 6102 6361 -689 3 1505 958 79 0 0 chr3 120701519 120701645 -38898138 + L1_Mm LINE L1 4610 4735 -1148 3 1505 3938 44 18 0 chr3 120701650 120702104 -38897679 + L1Md_F3 LINE L1 6109 6570 -14 3 1505 930 87 158 0 chr3 120702119 120702246 -38897537 + B1_Mus1 SINE Alu 2 148 0 3 1505 3590 215 25 16 chr3 120702276 120702971 -38896812 + Lx5 LINE L1 6349 7049 -1 3 1505 625 292 0 7 chr3 120702984 120703139 -38896644 - MT2A LTR ERVL -71 462 309 3 1505 5926 86 5 0 chr3 120703139 120704192 -38895591 - L1_Mus1 LINE L1 -448 6119 5061 3 1505 3869 59 0 21 chr3 120704192 120704657 -38895126 + L1_Mus1 LINE L1 6113 6567 0 3 1505 661 324 67 48 chr3 120704682 120704996 -38894787 - MT2A LTR ERVL -213 320 1 3 1505 328 111 0 31 chr3 120705784 120705849 -38893934 + (CATA)n Simple_repeat Simple_repeat 2 64 0 3 1505 885 209 53 42 chr3 120705920 120706110 -38893673 + B3A SINE B2 6 197 -1 3 1505 1683 279 70 16 chr3 120706239 120706981 -38892802 + L1M4c LINE L1 3920 4701 -1678 3 1505 14693 88 5 3 chr3 120706990 120709744 -38890039 - L1_Mus1 LINE L1 -1 6569 3809 3 1505 1632 226 38 25 chr3 120709749 120710265 -38889518 - L1_Mus1 LINE L1 -5576 1043 495 3 1505 669 251 24 99 chr3 120710248 120710534 -38889249 - L1VL1 LINE L1 -5981 437 145 3 1505 543 162 0 0 chr3 120710561 120710660 -38889123 + GA-rich Low_complexity Low_complexity 3 101 0 3 1505 250 239 141 0 chr3 120710666 120710737 -38889046 + L1MA5A LINE L1 5856 5936 -361 3 1505 579 282 111 43 chr3 120710899 120711295 -38888488 + L1MA7 LINE L1 5869 6291 0 3 1505 323 325 0 16 chr3 120714052 120714174 -38885609 + MLT1B LTR MaLR 271 390 0 3 1505 633 28 0 53 chr3 120714505 120714619 -38885164 + (TG)n Simple_repeat Simple_repeat 1 108 0 3 1505 759 228 0 0 chr3 120714848 120715028 -38884755 + (CA)n Simple_repeat Simple_repeat 1 180 0 3 1505 1348 278 45 28 chr3 120715286 120715645 -38884138 - ORR1D2 LTR MaLR 0 370 6 3 1505 513 0 0 0 chr3 120716942 120716999 -38882784 + (TG)n Simple_repeat Simple_repeat 2 58 0 3 1506 588 232 0 0 chr3 120717365 120717516 -38882267 + (TA)n Simple_repeat Simple_repeat 2 152 0 3 1506 288 188 67 17 chr3 120717527 120717646 -38882137 + (TA)n Simple_repeat Simple_repeat 2 126 0 3 1506 456 19 0 0 chr3 120717679 120717732 -38882051 + (TG)n Simple_repeat Simple_repeat 1 53 0 3 1506 455 291 12 62 chr3 120718133 120718294 -38881489 - RSINE1 SINE B4 -2 163 11 3 1506 8250 52 6 0 chr3 120718636 120719766 -38880017 - L1Md_F3 LINE L1 -2 6582 5447 3 1506 21902 41 1 1 chr3 120719787 120723120 -38876663 - L1Md_T LINE L1 0 6582 3249 3 1506 2152 100 81 14 chr3 120724001 120724346 -38875437 - RLTR9A LTR ERVK 0 368 1 3 1506 360 0 0 0 chr3 120725203 120725243 -38874540 + (TG)n Simple_repeat Simple_repeat 2 41 0 3 1506 261 219 15 85 chr3 120725261 120725391 -38874392 - Lx9 LINE L1 -1389 6255 6135 3 1506 448 250 26 28 chr3 120725402 120725533 -38874250 + Lx9 LINE L1 6354 6611 -1033 3 1506 216 0 0 0 chr3 120725677 120725701 -38874082 + (TTTG)n Simple_repeat Simple_repeat 4 27 0 3 1506 285 273 104 32 chr3 120725702 120725827 -38873956 - B1F1 SINE Alu -15 134 1 3 1506 291 71 0 0 chr3 120726116 120726158 -38873625 + (CCA)n Simple_repeat Simple_repeat 2 43 0 3 1506 363 23 0 0 chr3 120726433 120726477 -38873306 + (CA)n Simple_repeat Simple_repeat 1 44 0 3 1506 467 204 50 100 chr3 120726514 120726694 -38873089 - Lx7 LINE L1 0 7696 7526 3 1506 715 274 104 0 chr3 120726828 120727069 -38872714 - B4 SINE B4 -25 267 2 3 1506 189 0 0 0 chr3 120727617 120727638 -38872145 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 3 1506 21 0 0 0 chr3 120729750 120729771 -38870012 + AT_rich Low_complexity Low_complexity 1 21 0 3 1506 1066 227 224 0 chr3 120729773 120730186 -38869597 + RLTR18B LTR ERVK 1 505 -7 3 1506 732 54 0 0 chr3 120730638 120730731 -38869052 + (TC)n Simple_repeat Simple_repeat 2 94 0 3 1506 276 303 17 29 chr3 120730783 120730936 -38868847 + CT-rich Low_complexity Low_complexity 1 151 0 3 1506 1728 155 178 62 chr3 120731074 120731474 -38868309 - RLTR41 LTR ERV1 0 446 1 3 1506 419 196 8 111 chr3 120731530 120731656 -38868127 + MT2B LTR ERVL 152 264 -337 3 1506 834 40 23 53 chr3 120731563 120731696 -38868087 + B1_Mus1 SINE Alu 18 146 -2 3 1506 232 254 36 0 chr3 120731787 120731842 -38867941 - MLT1J2 LTR MaLR -391 57 1 3 1506 338 292 0 0 chr3 120732176 120732265 -38867518 - PB1D10 SINE Alu 0 117 29 3 1506 505 334 90 46 chr3 120734548 120734873 -38864910 - LTR33A LTR ERVL -159 372 9 3 1506 672 45 0 0 chr3 120735579 120735667 -38864116 + (TAGA)n Simple_repeat Simple_repeat 3 90 0 3 1506 524 198 99 0 chr3 120736164 120736275 -38863508 + B1_Mur2 SINE Alu 9 130 -19 3 1506 462 114 0 0 chr3 120736279 120736349 -38863434 + (TG)n Simple_repeat Simple_repeat 1 70 0 3 1506 351 0 0 0 chr3 120736351 120736390 -38863393 + (GA)n Simple_repeat Simple_repeat 2 40 0 3 1506 248 299 32 40 chr3 120736970 120737102 -38862681 + L2b LINE L2 3258 3387 0 3 1506 708 45 0 0 chr3 120737387 120737475 -38862308 + (TC)n Simple_repeat Simple_repeat 1 88 0 3 1506 252 0 0 0 chr3 120737487 120737515 -38862268 + (TG)n Simple_repeat Simple_repeat 1 28 0 3 1506 585 191 96 0 chr3 120737522 120737637 -38862146 - B1_Mur4 SINE Alu -19 131 6 3 1506 246 236 0 18 chr3 120737859 120737915 -38861868 + GA-rich Low_complexity Low_complexity 1 55 0 3 1506 347 217 29 0 chr3 120737918 120737987 -38861796 - ID4 SINE ID -11 72 2 3 1506 939 284 107 109 chr3 120738284 120739210 -38860573 - MER97c DNA MER1_type? -4 1086 163 3 1506 1232 54 0 0 chr3 120739398 120739545 -38860238 + B1_Mus2 SINE Alu 1 147 0 3 1506 192 319 14 14 chr3 120739629 120739699 -38860084 + L2a LINE L2 3315 3384 -42 3 1506 353 175 0 0 chr3 120740462 120740519 -38859264 + Lx9 LINE L1 6548 6604 -1040 3 1506 1252 121 54 22 chr3 120740519 120740908 -38858875 + RLTR45 LTR ERVK 30 482 0 3 1506 27 49 0 0 chr3 120740908 120740949 -38858834 + AT_rich Low_complexity Low_complexity 1 41 0 3 1506 2119 186 129 24 chr3 120740951 120741448 -38858335 + Lx9 LINE L1 7095 7643 -1 3 1506 188 0 74 0 chr3 120742173 120742200 -38857583 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 3 1506 1006 183 114 0 chr3 120742415 120742617 -38857166 - URR1B DNA MER1_type 0 225 1 3 1506 22 80 0 0 chr3 120742921 120742971 -38856812 + AT_rich Low_complexity Low_complexity 1 50 0 3 1506 233 192 19 0 chr3 120743749 120743801 -38855982 + ORR1E LTR MaLR 88 140 -219 3 1506 255 366 23 6 chr3 120744112 120744288 -38855495 - L2a LINE L2 -310 3116 2938 3 1506 250 304 108 0 chr3 120744370 120744472 -38855311 + MER5A DNA MER1_type 10 122 -67 3 1506 556 286 7 7 chr3 120744725 120744866 -38854917 + B1F SINE Alu 1 141 -8 3 1506 224 310 76 52 chr3 120745534 120745745 -38854038 - L2a LINE L2 -7 3419 3204 3 1506 387 0 0 0 chr3 120746611 120746654 -38853129 + (TA)n Simple_repeat Simple_repeat 1 43 0 3 1506 243 0 0 0 chr3 120746654 120746680 -38853103 + (GA)n Simple_repeat Simple_repeat 2 28 0 3 1506 213 139 0 0 chr3 120746690 120746733 -38853050 + (TAGA)n Simple_repeat Simple_repeat 3 45 0 3 1506 272 267 178 0 chr3 120746917 120747007 -38852776 + LTR85c LTR Gypsy? 446 551 -272 3 1506 700 301 60 96 chr3 120747267 120747568 -38852215 + B4A SINE B4 3 292 0 3 1506 402 21 0 0 chr3 120747633 120747680 -38852103 + (CA)n Simple_repeat Simple_repeat 2 48 0 3 1506 342 0 0 0 chr3 120748915 120748953 -38850830 + (TTG)n Simple_repeat Simple_repeat 2 39 0 3 1506 895 271 40 8 chr3 120749156 120749409 -38850374 + B4 SINE B4 5 265 -27 3 1506 246 32 0 0 chr3 120749422 120749453 -38850330 + (CA)n Simple_repeat Simple_repeat 2 32 0 3 1506 607 205 82 0 chr3 120749611 120749733 -38850050 + B1_Mus2 SINE Alu 2 133 -14 3 1506 254 260 28 65 chr3 120749754 120749861 -38849922 - MLT1K LTR MaLR -65 530 428 3 1506 1245 113 17 6 chr3 120749863 120750041 -38849742 + B2_Mm2 SINE B2 1 180 -15 3 1506 884 117 0 7 chr3 120750041 120750187 -38849596 + (GAAA)n Simple_repeat Simple_repeat 4 148 0 3 1506 39404 7 0 1 chr3 120750271 120756479 -38843304 + L1Md_A LINE L1 1 5586 -297 3 1506 9157 6 0 0 chr3 120756479 120757475 -38842308 + L1Md_A LINE L1 5587 6582 0 3 1506 2180 213 34 20 chr3 120758102 120758600 -38841183 + RLTR16 LTR ERVK 1 505 0 4 1506 233 314 0 0 chr3 120758612 120758663 -38841120 + polypurine Low_complexity Low_complexity 4 54 0 4 1506 4390 132 159 78 chr3 120758663 120759309 -38840474 + RLTR13D4 LTR ERVK 2 778 -255 4 1506 577 37 12 0 chr3 120759309 120759390 -38840393 - L1Md_F2 LINE L1 0 6582 6501 4 1506 4390 132 159 78 chr3 120759390 120759698 -38840085 + RLTR13D4 LTR ERVK 779 1033 0 4 1506 651 78 0 0 chr3 120759712 120759802 -38839981 + (GA)n Simple_repeat Simple_repeat 1 90 0 4 1506 228 200 0 0 chr3 120760259 120760309 -38839474 + (CA)n Simple_repeat Simple_repeat 1 50 0 4 1506 249 267 17 0 chr3 120760699 120760759 -38839024 + GA-rich Low_complexity Low_complexity 1 61 0 4 1506 872 65 8 0 chr3 120761138 120761262 -38838521 + (GGGA)n Simple_repeat Simple_repeat 4 128 0 4 1506 532 302 151 27 chr3 120763714 120764013 -38835770 - MLT1A LTR MaLR -38 336 1 4 1506 684 227 0 0 chr3 120764373 120764501 -38835282 - RSINE1 SINE B4 -36 129 2 4 1506 471 100 0 0 chr3 120765064 120765134 -38834649 + (TG)n Simple_repeat Simple_repeat 2 71 0 4 1506 483 324 26 48 chr3 120765154 120765381 -38834402 - B4A SINE B4 0 292 71 4 1506 17786 19 0 0 chr3 120765772 120767793 -38831990 + L1Md_T LINE L1 3566 5586 -297 4 1506 9151 6 0 0 chr3 120767793 120768789 -38830994 + L1Md_T LINE L1 5587 6582 0 4 1506 500 233 17 8 chr3 120768790 120768907 -38830876 - RLTR18B LTR ERVK -45 571 454 4 1506 648 242 48 6 chr3 120769107 120769273 -38830510 - RLTR18B LTR ERVK -331 181 9 4 1506 24 0 0 0 chr3 120769555 120769579 -38830204 + AT_rich Low_complexity Low_complexity 1 24 0 4 1506 424 237 51 13 chr3 120769740 120769898 -38829885 + L1MA4 LINE L1 5767 5930 -370 4 1506 211 274 0 0 chr3 120769972 120770034 -38829749 + GA-rich Low_complexity Low_complexity 3 64 0 4 1506 31 0 0 0 chr3 120770095 120770126 -38829657 + AT_rich Low_complexity Low_complexity 1 31 0 4 1506 1122 250 24 68 chr3 120770179 120770593 -38829190 - MTE2a LTR MaLR -15 404 1 4 1506 351 0 0 0 chr3 120770706 120770745 -38829038 + (GA)n Simple_repeat Simple_repeat 1 39 0 4 1506 878 167 0 27 chr3 120772388 120772536 -38827247 - B1_Mus1 SINE Alu 0 148 5 4 1506 180 0 0 0 chr3 120772606 120772626 -38827157 + (CAT)n Simple_repeat Simple_repeat 2 21 0 4 1506 369 286 0 0 chr3 120772688 120772772 -38827011 + B4 SINE B4 3 86 -206 4 1506 245 98 0 24 chr3 120772773 120772815 -38826968 + (CAAA)n Simple_repeat Simple_repeat 2 42 0 4 1506 201 74 0 0 chr3 120772888 120772915 -38826868 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 4 1506 339 287 146 7 chr3 120772920 120773057 -38826726 + B4 SINE B4 132 287 -5 4 1506 197 306 36 38 chr3 120773418 120773526 -38826257 - L2b LINE L2 -220 3167 3059 4 1506 828 278 55 75 chr3 120774063 120774439 -38825344 + MTE2a LTR MaLR 20 398 -21 4 1506 2178 283 55 98 chr3 120774655 120774699 -38825084 - Lx5 LINE L1 -19 7031 6989 4 1506 261 0 0 0 chr3 120774699 120774728 -38825055 + (CCA)n Simple_repeat Simple_repeat 2 30 0 4 1506 2178 283 55 98 chr3 120774728 120775697 -38824086 - Lx5 LINE L1 -62 6988 6061 4 1506 2314 207 16 43 chr3 120775722 120776333 -38823450 + Lx6 LINE L1 5406 6005 -1455 4 1506 575 79 22 0 chr3 120776472 120776561 -38823222 + (TTTC)n Simple_repeat Simple_repeat 2 92 0 4 1506 449 301 75 19 chr3 120776605 120776764 -38823019 - B3 SINE B2 -11 205 38 4 1506 1745 151 24 59 chr3 120776764 120777102 -38822681 + ORR1A3 LTR MaLR 1 326 0 4 1506 253 108 0 0 chr3 120777102 120777139 -38822644 - B3A SINE B2 -156 42 6 4 1506 1387 131 9 0 chr3 120777209 120777430 -38822353 - Lx2 LINE L1 0 6997 6775 4 1506 5680 117 23 1 chr3 120777430 120778250 -38821533 - Lx2 LINE L1 -354 6643 5806 4 1506 306 0 0 0 chr3 120778271 120778305 -38821478 + (GA)n Simple_repeat Simple_repeat 2 35 0 4 1506 207 186 0 0 chr3 120778746 120778789 -38820994 + CT-rich Low_complexity Low_complexity 2 44 0 4 1506 645 268 0 0 chr3 120778820 120778958 -38820825 - RSINE1 SINE B4 -19 146 9 4 1506 320 355 125 33 chr3 120779505 120779808 -38819975 + MLT1A0 LTR MaLR 6 336 -29 4 1506 267 75 0 0 chr3 120779837 120779848 -38819935 + (TTTTTG)n Simple_repeat Simple_repeat 2 12 0 4 1506 218 32 32 0 chr3 120779848 120779879 -38819904 + (TTGG)n Simple_repeat Simple_repeat 4 35 0 4 1506 267 75 0 0 chr3 120779879 120779907 -38819876 + (TTTTTG)n Simple_repeat Simple_repeat 4 31 0 4 1506 291 329 39 47 chr3 120780076 120780400 -38819383 - L1M7 LINE L1 -3752 2463 2145 4 1506 723 275 12 0 chr3 120780544 120780704 -38819079 + B3A SINE B2 1 162 -36 4 1506 281 313 0 12 chr3 120780748 120780832 -38818951 + CT-rich Low_complexity Low_complexity 3 85 0 4 1506 207 0 0 0 chr3 120780920 120780943 -38818840 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 4 1506 307 176 281 53 chr3 120781007 120781121 -38818662 + L1MC5 LINE L1 7616 7755 -206 4 1506 942 239 36 54 chr3 120781447 120781726 -38818057 + ORR1E LTR MaLR 49 322 -37 4 1506 1034 213 67 88 chr3 120781781 120782157 -38817626 - RLTR40 LTR ERVK -164 653 286 4 1506 699 284 23 83 chr3 120782160 120782529 -38817254 + RLTR11B LTR ERVK 1 350 -178 4 1506 486 236 0 0 chr3 120782948 120783092 -38816691 + (TG)n Simple_repeat Simple_repeat 2 145 0 4 1506 396 287 7 92 chr3 120783093 120783235 -38816548 - RSINE1 SINE B4 0 165 36 4 1506 337 314 141 65 chr3 120783627 120783889 -38815894 + B4A SINE B4 10 291 -1 4 1506 1187 179 32 9 chr3 120785419 120785639 -38814144 - URR1B DNA MER1_type 0 225 1 4 1506 395 326 68 0 chr3 120785727 120785874 -38813909 + ID_B1 SINE B4 35 191 -33 4 1506 202 216 19 19 chr3 120785888 120785940 -38813843 + GA-rich Low_complexity Low_complexity 3 54 0 4 1506 745 250 28 0 chr3 120786653 120786829 -38812954 + B3A SINE B2 2 182 -16 4 1506 2218 19 15 4 chr3 120786882 120787146 -38812637 + L1Md_F3 LINE L1 6318 6584 0 4 1506 355 146 171 0 chr3 120787153 120787235 -38812548 - Lx4B LINE L1 -907 6151 6056 4 1506 4101 169 127 13 chr3 120787240 120788058 -38811725 + Lx4B LINE L1 6143 7053 -5 4 1506 350 275 96 96 chr3 120788316 120788513 -38811270 + Tigger5 DNA MER2_type 1 197 -2209 4 1506 555 281 82 15 chr3 120788878 120789073 -38810710 + ID_B1 SINE B4 1 208 -16 4 1506 854 60 0 8 chr3 120790670 120790788 -38808995 + (GA)n Simple_repeat Simple_repeat 1 117 0 4 1506 615 27 0 0 chr3 120791263 120791336 -38808447 + (TC)n Simple_repeat Simple_repeat 2 74 0 4 1506 507 17 0 0 chr3 120793029 120793089 -38806694 + (TG)n Simple_repeat Simple_repeat 2 61 0 4 1506 1229 255 60 33 chr3 120793284 120793649 -38806134 - MTEb LTR MaLR 0 379 5 4 1506 514 347 88 8 chr3 120796603 120796841 -38802942 + MIR SINE MIR 5 261 -1 4 1506 180 0 0 0 chr3 120796921 120796941 -38802842 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 4 1506 265 395 36 72 chr3 120797861 120798000 -38801783 + MER58A DNA MER1_type 3 136 -88 4 1506 372 250 134 85 chr3 120798023 120798246 -38801537 + B4 SINE B4 13 246 -46 4 1506 8148 105 31 151 chr3 120798256 120798545 -38801238 - RLTR21 LTR ERVK 0 1572 1291 4 1506 204 40 0 0 chr3 120798545 120798570 -38801213 + (GA)n Simple_repeat Simple_repeat 2 26 0 4 1506 8148 105 31 151 chr3 120798570 120800062 -38799721 - RLTR21 LTR ERVK -282 1290 5 4 1506 206 216 0 0 chr3 120800068 120800105 -38799678 + (CA)n Simple_repeat Simple_repeat 1 37 0 4 1506 200 303 30 73 chr3 120800224 120800388 -38799395 - L2 LINE L2 -472 2947 2791 4 1506 342 247 0 53 chr3 120800755 120800849 -38798934 + L2c LINE L2 3294 3382 -5 4 1506 228 319 56 21 chr3 120801373 120801517 -38798266 + B1F SINE Alu 1 149 0 4 1506 204 83 0 53 chr3 120801551 120801589 -38798194 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 4 1506 539 280 79 97 chr3 120801600 120801940 -38797843 + ORR1E LTR MaLR 22 355 -4 4 1506 627 108 0 0 chr3 120802254 120802347 -38797436 + (TC)n Simple_repeat Simple_repeat 2 94 0 4 1506 379 306 18 44 chr3 120802348 120802461 -38797322 - PB1D7 SINE Alu -5 115 6 4 1506 23 0 0 0 chr3 120806734 120806757 -38793026 + AT_rich Low_complexity Low_complexity 1 23 0 4 1506 213 204 37 0 chr3 120808873 120808927 -38790856 + T-rich Low_complexity Low_complexity 4 59 0 4 1506 231 173 0 0 chr3 120808927 120808979 -38790804 + (TTGG)n Simple_repeat Simple_repeat 4 55 0 4 1506 216 0 0 0 chr3 120809035 120809059 -38790724 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 4 1506 527 114 11 74 chr3 120809082 120809177 -38790606 - B1_Mur4 SINE Alu -1 149 61 4 1506 866 179 5 43 chr3 120809176 120809363 -38790420 + RMER6A LTR ERVK 577 756 0 4 1506 268 229 0 0 chr3 120809451 120809499 -38790284 + B1F SINE Alu 10 57 -92 4 1506 1445 140 14 5 chr3 120810895 120811117 -38788666 - URR1A DNA MER1_type 0 226 3 4 1506 584 172 17 25 chr3 120811748 120811867 -38787916 + B1_Mus1 SINE Alu 2 119 -29 4 1506 243 0 0 0 chr3 120812848 120812875 -38786908 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 4 1506 960 294 25 18 chr3 120815224 120815508 -38784275 + B4 SINE B4 3 288 -4 4 1506 310 269 169 28 chr3 120815560 120815938 -38783845 + L1MEf LINE L1 1068 1504 -4696 4 1506 1792 283 130 15 chr3 120816044 120816766 -38783017 - Lx8 LINE L1 -19 7454 6650 4 1506 250 258 25 133 chr3 120817442 120817629 -38782154 + MER106A DNA MER1_type 65 233 -3 4 1506 331 269 9 9 chr3 120817768 120817877 -38781906 - L2 LINE L2 -1310 2109 2001 4 1506 253 277 60 0 chr3 120817875 120817958 -38781825 + MIR3 SINE MIR 100 187 -21 4 1506 442 31 31 0 chr3 120817997 120818061 -38781722 + (CA)n Simple_repeat Simple_repeat 2 67 0 4 1506 520 310 84 36 chr3 120818744 120819052 -38780731 - Charlie4a DNA MER1_type -169 339 17 4 1506 189 0 0 0 chr3 120820275 120820296 -38779487 + (TTG)n Simple_repeat Simple_repeat 2 22 0 4 1506 482 297 14 28 chr3 120820754 120820896 -38778887 + B1F1 SINE Alu 3 142 -7 4 1506 680 286 66 27 chr3 120820915 120821174 -38778609 + B4A SINE B4 1 269 -23 4 1506 715 210 22 0 chr3 120821678 120821816 -38777967 + B1_Mur2 SINE Alu 1 141 -8 5 1506 1683 176 100 3 chr3 120822385 120822726 -38777057 - ORR1C1 LTR MaLR 0 378 5 5 1506 224 157 39 0 chr3 120823199 120823250 -38776533 + (CACG)n Simple_repeat Simple_repeat 2 54 0 5 1506 23 33 0 0 chr3 120824291 120824321 -38775462 + AT_rich Low_complexity Low_complexity 1 30 0 5 1506 278 151 14 0 chr3 120825216 120825289 -38774494 + GA-rich Low_complexity Low_complexity 2 75 0 5 1506 846 216 91 20 chr3 120825408 120825606 -38774177 - B3 SINE B2 0 216 5 5 1506 459 159 23 30 chr3 120825782 120825904 -38773879 + PB1D10 SINE Alu 3 124 -25 5 1506 306 224 224 0 chr3 120825917 120825964 -38773819 + PB1D9 SINE Alu 1 48 -72 5 1506 717 73 0 0 chr3 120825964 120826060 -38773723 + (TAGA)n Simple_repeat Simple_repeat 2 97 0 5 1506 306 224 224 0 chr3 120826060 120826110 -38773673 + PB1D9 SINE Alu 49 119 -1 5 1506 336 259 134 40 chr3 120826672 120826821 -38772962 + MamRep1161 DNA TcMar 216 378 -579 5 1506 333 125 0 0 chr3 120826904 120826952 -38772831 + L1MA5 LINE L1 5893 5940 -360 5 1506 357 302 119 0 chr3 120826969 120827171 -38772612 + L1MA5 LINE L1 6066 6291 -9 5 1506 622 237 37 63 chr3 120827197 120827386 -38772397 - B3A SINE B2 0 198 15 5 1506 595 164 82 0 chr3 120827674 120827784 -38771999 + PB1D9 SINE Alu 1 119 -1 5 1506 993 235 89 7 chr3 120828010 120828280 -38771503 - B4A SINE B4 0 292 1 5 1506 455 212 27 0 chr3 120828319 120828465 -38771318 + GA-rich Low_complexity Low_complexity 1 150 0 5 1506 251 260 181 3 chr3 120829066 120829296 -38770487 + L1M3 LINE L1 4128 4403 -1743 5 1506 591 220 38 0 chr3 120829291 120829489 -38770294 + L1M3 LINE L1 5294 5501 -693 5 1506 529 265 46 33 chr3 120830296 120830422 -38769361 + RSINE1 SINE B4 12 144 -21 5 1506 450 0 0 0 chr3 120830422 120830472 -38769311 + (CATA)n Simple_repeat Simple_repeat 4 53 0 5 1506 529 265 46 33 chr3 120830472 120830497 -38769286 + RSINE1 SINE B4 145 165 0 5 1506 419 283 117 5 chr3 120831611 120831813 -38767970 - MIRb SINE MIR -1 261 45 5 1506 2266 120 9 0 chr3 120831908 120832232 -38767551 - ORR1A2 LTR MaLR 0 327 1 5 1506 885 188 43 57 chr3 120832264 120832473 -38767310 + B3 SINE B2 11 216 0 5 1506 237 259 0 0 chr3 120832512 120832566 -38767217 + MER58B DNA MER1_type 129 182 -159 5 1506 189 0 0 0 chr3 120833100 120833121 -38766662 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 5 1506 3666 105 62 27 chr3 120833146 120833694 -38766089 + RMER2 LTR ERV1 1 567 0 5 1506 584 217 66 10 chr3 120833695 120833833 -38765950 - B3 SINE B2 -59 136 2 5 1506 900 161 21 0 chr3 120833875 120834018 -38765765 - B1_Mur4 SINE Alu -2 148 3 5 1506 660 26 0 0 chr3 120834056 120834134 -38765649 + (TC)n Simple_repeat Simple_repeat 1 78 0 5 1506 228 67 0 0 chr3 120834134 120834163 -38765620 + (CA)n Simple_repeat Simple_repeat 1 30 0 5 1506 248 288 15 0 chr3 120834585 120834651 -38765132 + RMER1B Other Other 40 106 -960 5 1506 402 316 64 54 chr3 120834822 120835181 -38764602 + RMER1B Other Other 183 838 -504 5 1506 810 217 90 41 chr3 120835186 120835431 -38764352 + RMER1C Other Other 1068 1324 -18 5 1506 875 285 54 30 chr3 120835546 120835879 -38763904 + MLT1A1 LTR MaLR 1 341 -67 5 1506 212 291 134 17 chr3 120836006 120836125 -38763658 + MIRm SINE MIR 4 136 -140 5 1506 22 0 0 0 chr3 120838021 120838043 -38761740 + AT_rich Low_complexity Low_complexity 1 22 0 5 1506 208 329 0 0 chr3 120838816 120838889 -38760894 + (CA)n Simple_repeat Simple_repeat 2 74 0 5 1506 286 236 44 4 chr3 120838975 120839105 -38760678 + MLT1A1 LTR MaLR 251 387 -21 5 1506 327 49 0 0 chr3 120839341 120839382 -38760401 + (TTAA)n Simple_repeat Simple_repeat 1 41 0 5 1506 1948 146 91 0 chr3 120839540 120839890 -38759893 + ORR1B1 LTR MaLR 5 386 -8 5 1506 371 260 52 0 chr3 120839961 120840038 -38759745 + B3 SINE B2 125 205 -11 5 1506 4913 83 0 2 chr3 120840293 120840933 -38758850 - L1_Mm LINE L1 -651 5232 4594 5 1506 3167 66 0 0 chr3 120840916 120841304 -38758479 + L1_Mm LINE L1 5199 5586 -297 5 1506 8175 49 4 2 chr3 120841304 120842297 -38757486 + L1Md_F2 LINE L1 5587 6581 -1 5 1506 314 237 0 62 chr3 120842380 120842461 -38757322 - ID4 SINE ID -7 76 1 5 1506 597 350 111 33 chr3 120842540 120843028 -38756755 + L3 LINE CR1 3939 4464 -25 5 1506 426 108 24 24 chr3 120843484 120843569 -38756214 + ORR1B1 LTR MaLR 41 125 -269 5 1506 283 247 12 94 chr3 120844109 120844194 -38755589 + MLT1A1 LTR MaLR 66 143 -265 5 1506 274 359 0 19 chr3 120844205 120844310 -38755473 + MLT1A1 LTR MaLR 263 365 0 5 1506 272 262 18 108 chr3 120844450 120844617 -38755166 + L1M LINE L1 5255 5406 -767 5 1506 1133 192 25 0 chr3 120844826 120845024 -38754759 + B3 SINE B2 1 203 -13 5 1506 1085 275 75 51 chr3 120845484 120845994 -38753789 + MT2A LTR ERVL 2 523 -10 5 1506 621 210 33 0 chr3 120846420 120846562 -38753221 + B3 SINE B2 1 161 -32 5 1506 1246 103 11 0 chr3 120846608 120846783 -38753000 + B2_Mm1t SINE B2 3 179 -14 5 1506 521 197 25 25 chr3 120847616 120847736 -38752047 - PB1D9 SINE Alu 0 120 1 5 1506 261 340 72 26 chr3 120847795 120847988 -38751795 + MER46C DNA MER2_type 79 280 -58 5 1507 456 19 0 0 chr3 120848571 120848624 -38751159 + (TTA)n Simple_repeat Simple_repeat 2 54 0 5 1507 1187 146 18 51 chr3 120848631 120848848 -38750935 - Lx3B LINE L1 -4 6969 6760 5 1507 411 250 250 0 chr3 120848992 120849140 -38750643 + MLT2D LTR ERVL 1 185 -229 5 1507 279 358 70 83 chr3 120849273 120849514 -38750269 + MLT2D LTR ERVL 165 402 -62 5 1507 631 282 53 7 chr3 120849744 120849894 -38749889 + RSINE1 SINE B4 2 158 -7 5 1507 266 47 0 44 chr3 120849934 120849979 -38749804 + (CAGAGA)n Simple_repeat Simple_repeat 6 48 0 5 1507 378 134 13 118 chr3 120850071 120850147 -38749636 + ID4 SINE ID 5 72 -11 5 1507 287 268 104 52 chr3 120850526 120850699 -38749084 + ERVL-int LTR ERVL 2682 2863 -2804 5 1507 28 48 0 0 chr3 120850885 120850927 -38748856 + AT_rich Low_complexity Low_complexity 1 42 0 5 1507 1094 326 50 30 chr3 120851295 120851895 -38747888 + ERVL-int LTR ERVL 3768 4379 -1378 5 1507 357 232 124 9 chr3 120851925 120852038 -38747745 - MT2A LTR ERVL -2 531 406 5 1507 348 321 125 35 chr3 120852124 120852324 -38747459 - MT2A LTR ERVL -146 387 170 5 1507 335 299 28 18 chr3 120852362 120852471 -38747312 - MTEa LTR MaLR -269 110 1 5 1507 3379 40 2 0 chr3 120852754 120853149 -38746634 - MTA_Mm LTR MaLR 0 396 1 5 1507 9549 23 9 0 chr3 120853149 120854237 -38745546 - MTA_Mm-int LTR MaLR 0 1098 1 5 1507 3586 13 2 0 chr3 120854237 120854632 -38745151 - MTA_Mm LTR MaLR 0 396 1 5 1507 381 265 110 26 chr3 120854634 120854789 -38744994 + ERVL-int LTR ERVL 4837 5004 -663 5 1507 335 280 47 16 chr3 120854894 120855021 -38744762 - MTD LTR MaLR -286 133 3 5 1507 429 279 29 0 chr3 120855633 120855737 -38744046 + B1_Mur2 SINE Alu 2 108 -41 5 1507 964 176 21 3 chr3 120855747 120856076 -38743707 + GA-rich Low_complexity Low_complexity 1 335 0 5 1507 327 104 0 0 chr3 120856078 120856126 -38743657 + (TGAA)n Simple_repeat Simple_repeat 2 49 0 5 1507 546 318 7 0 chr3 120856236 120856390 -38743393 + RSINE1 SINE B4 11 165 0 5 1507 614 318 33 0 chr3 120857175 120857389 -38742394 + B4A SINE B4 5 225 -67 5 1507 1078 174 23 33 chr3 120857391 120857605 -38742178 + B3 SINE B2 2 213 -3 5 1507 1522 72 0 5 chr3 120857640 120857835 -38741948 + B2_Mm2 SINE B2 2 195 0 5 1507 1000 115 13 20 chr3 120857848 120857999 -38741784 + B1_Mur4 SINE Alu 1 150 0 5 1507 249 318 0 0 chr3 120858022 120858085 -38741698 + B4A SINE B4 216 278 -14 5 1507 195 139 0 0 chr3 120858096 120858132 -38741651 + (CACG)n Simple_repeat Simple_repeat 4 39 0 5 1507 24 0 0 0 chr3 120858331 120858355 -38741428 + AT_rich Low_complexity Low_complexity 1 24 0 5 1507 234 275 42 28 chr3 120859481 120859552 -38740231 + L1M3a LINE L1 430 501 -5454 5 1507 329 0 0 24 chr3 120859983 120860025 -38739758 + (TAAA)n Simple_repeat Simple_repeat 4 44 0 5 1507 619 148 318 47 chr3 120860991 120861161 -38738622 + B3 SINE B2 1 216 0 5 1507 189 0 0 0 chr3 120861254 120861275 -38738508 + (TAGA)n Simple_repeat Simple_repeat 2 22 0 5 1507 545 185 146 73 chr3 120861317 120861509 -38738274 + B3 SINE B2 5 210 -6 5 1507 249 57 0 0 chr3 120863973 120864008 -38735775 + (TG)n Simple_repeat Simple_repeat 2 36 0 5 1507 521 68 14 0 chr3 120864009 120864083 -38735700 + (GA)n Simple_repeat Simple_repeat 2 76 0 5 1507 312 270 77 39 chr3 120864083 120864187 -38735596 - PB1D9 SINE Alu -12 108 1 5 1507 723 102 0 0 chr3 120864188 120864316 -38735467 + (TG)n Simple_repeat Simple_repeat 1 128 0 5 1507 704 266 11 11 chr3 120864711 120864897 -38734886 + ORR1E LTR MaLR 3 188 -171 5 1507 3059 164 189 108 chr3 120864902 120865482 -38734301 + RMER12 LTR ERVK 1 674 -648 5 1507 200 35 35 0 chr3 120865482 120865511 -38734272 + (TTTG)n Simple_repeat Simple_repeat 3 32 0 5 1507 3059 164 189 108 chr3 120865511 120865607 -38734176 + RMER12 LTR ERVK 675 675 -647 5 1507 1066 103 7 0 chr3 120865607 120865752 -38734031 - B1_Mus2 SINE Alu 0 147 2 5 1507 3059 164 189 108 chr3 120865752 120865872 -38733911 + RMER12 LTR ERVK 675 806 -516 5 1507 225 0 0 0 chr3 120865872 120865897 -38733886 + (CATA)n Simple_repeat Simple_repeat 3 27 0 5 1507 3059 164 189 108 chr3 120865897 120866196 -38733587 + RMER12 LTR ERVK 807 1186 -136 5 1507 385 326 111 22 chr3 120867328 120867554 -38732229 + MER77 LTR ERVL 330 575 -32 5 1507 3429 180 139 64 chr3 120867552 120867754 -38732029 + RMER12 LTR ERVK 111 309 -1013 5 1507 207 0 0 0 chr3 120867754 120867777 -38732006 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 5 1507 1252 109 17 0 chr3 120867779 120867953 -38731830 - B2_Mm2 SINE B2 -17 178 2 5 1507 3429 180 139 64 chr3 120867953 120868757 -38731026 + RMER12 LTR ERVK 310 1195 -127 5 1507 215 218 18 0 chr3 120868790 120868845 -38730938 + C-rich Low_complexity Low_complexity 4 59 0 5 1507 1137 87 0 0 chr3 120869445 120869606 -38730177 - B2_Mm2 SINE B2 -34 161 1 5 1507 295 292 21 10 chr3 120869606 120869696 -38730087 + MLT1D LTR MaLR 370 460 -45 5 1507 415 211 0 26 chr3 120869847 120869964 -38729819 + CT-rich Low_complexity Low_complexity 2 115 0 5 1507 857 175 0 0 chr3 120869969 120870106 -38729677 - B1_Mus2 SINE Alu -6 141 5 5 1507 252 143 0 0 chr3 120870582 120870624 -38729159 + (A)n Simple_repeat Simple_repeat 1 42 0 5 1507 320 267 0 0 chr3 120871035 120871121 -38728662 + PB1D10 SINE Alu 32 117 0 5 1507 189 0 0 0 chr3 120871453 120871474 -38728309 + (CA)n Simple_repeat Simple_repeat 1 21 0 5 1507 490 212 152 45 chr3 120873709 120873887 -38725896 + B3 SINE B2 17 213 -3 5 1507 29 60 0 0 chr3 120874110 120874160 -38725623 + AT_rich Low_complexity Low_complexity 1 50 0 6 1507 21 0 0 0 chr3 120874699 120874720 -38725063 + GC_rich Low_complexity Low_complexity 1 21 0 6 1507 246 156 0 0 chr3 120875211 120875256 -38724527 + (ATTTG)n Simple_repeat Simple_repeat 3 47 0 6 1507 347 274 75 43 chr3 120877367 120877554 -38722229 + MamRep564 Unknown Unknown 43 235 -122 6 1507 450 286 168 0 chr3 120879088 120879273 -38720510 + MLT1A0 LTR MaLR 1 216 -149 6 1507 2081 145 66 9 chr3 120879277 120879624 -38720159 - ORR1B2 LTR MaLR 0 367 1 6 1507 315 0 0 0 chr3 120880676 120880711 -38719072 + (CA)n Simple_repeat Simple_repeat 2 36 0 6 1507 918 192 8 111 chr3 120880717 120880951 -38718832 - B3 SINE B2 -6 210 1 6 1507 205 300 0 0 chr3 120881102 120881152 -38718631 + L2a LINE L2 3353 3402 -24 6 1507 285 29 0 0 chr3 120881168 120881202 -38718581 + (TGAA)n Simple_repeat Simple_repeat 2 35 0 6 1507 625 299 22 28 chr3 120881272 120881454 -38718329 + B4A SINE B4 89 269 -23 6 1507 358 20 39 0 chr3 120881465 120881516 -38718267 + (CA)n Simple_repeat Simple_repeat 1 53 0 6 1507 2547 74 3 12 chr3 120881912 120882242 -38717541 + ORR1A2 LTR MaLR 1 327 0 6 1507 2653 151 47 18 chr3 120882247 120882759 -38717024 - RLTR11A2 LTR ERVK 0 527 1 6 1507 330 243 0 122 chr3 120884211 120884237 -38715546 + MT2B LTR ERVL 144 153 -448 6 1507 746 176 0 16 chr3 120884237 120884364 -38715419 + B1_Mur2 SINE Alu 3 127 -22 6 1507 226 295 0 16 chr3 120884520 120884582 -38715201 + (CA)n Simple_repeat Simple_repeat 2 62 0 6 1507 222 148 0 0 chr3 120885223 120885277 -38714506 + (TCTCTG)n Simple_repeat Simple_repeat 6 59 0 6 1507 598 101 40 40 chr3 120885296 120885472 -38714311 + (TCTCTG)n Simple_repeat Simple_repeat 3 178 0 6 1507 195 69 0 0 chr3 120885488 120885517 -38714266 + (TCTCTG)n Simple_repeat Simple_repeat 2 30 0 6 1507 267 93 0 0 chr3 120885522 120885565 -38714218 + (TCTG)n Simple_repeat Simple_repeat 2 44 0 6 1507 852 128 0 0 chr3 120885591 120885770 -38714013 + (TC)n Simple_repeat Simple_repeat 2 180 0 6 1507 318 253 62 10 chr3 120885824 120885920 -38713863 + RMER10A LTR ERVL 318 418 -24 6 1507 414 0 0 0 chr3 120886083 120886129 -38713654 + (TTTA)n Simple_repeat Simple_repeat 2 47 0 6 1507 931 74 87 13 chr3 120886129 120886279 -38713504 - B2_Mm2 SINE B2 -33 162 2 6 1507 676 227 95 16 chr3 120886327 120886520 -38713263 - B3 SINE B2 0 216 14 6 1507 21 36 0 0 chr3 120887680 120887708 -38712075 + AT_rich Low_complexity Low_complexity 1 28 0 6 1507 606 28 0 0 chr3 120887957 120888029 -38711754 + (GA)n Simple_repeat Simple_repeat 1 72 0 6 1507 3565 230 84 85 chr3 120888183 120889305 -38710478 + Lx7 LINE L1 6420 7535 -161 6 1507 1984 120 30 51 chr3 120889305 120889639 -38710144 + ORR1A2 LTR MaLR 1 327 0 6 1507 3565 230 84 85 chr3 120889639 120889795 -38709988 + Lx7 LINE L1 7536 7696 0 6 1507 21 0 0 0 chr3 120890502 120890523 -38709260 + AT_rich Low_complexity Low_complexity 1 21 0 6 1507 268 289 12 0 chr3 120890911 120890994 -38708789 - L1ME3A LINE L1 -210 5963 5880 6 1507 702 209 13 7 chr3 120891011 120891148 -38708635 + B1_Mur4 SINE Alu 1 139 -11 6 1507 378 0 0 0 chr3 120891148 120891190 -38708593 + (TAAA)n Simple_repeat Simple_repeat 2 43 0 6 1507 702 209 13 7 chr3 120891190 120891201 -38708582 + B1_Mur4 SINE Alu 140 150 0 6 1507 272 238 83 0 chr3 120891218 120891302 -38708481 - L1ME3A LINE L1 -642 5802 5712 6 1507 712 199 50 0 chr3 120891424 120891565 -38708218 + B1_Mur1 SINE Alu 1 148 -1 6 1507 431 281 75 0 chr3 120891589 120891735 -38708048 - MLT1D LTR MaLR -7 498 342 6 1507 432 0 0 0 chr3 120891767 120891815 -38707968 + (TG)n Simple_repeat Simple_repeat 1 48 0 6 1507 422 271 24 48 chr3 120891847 120891971 -38707812 - B4 SINE B4 -41 251 131 6 1507 295 301 10 31 chr3 120892042 120892138 -38707645 - MLT1D LTR MaLR -411 94 1 6 1507 434 230 35 69 chr3 120892517 120892690 -38707093 + RNLTR23 LTR ERVK 464 630 -12 6 1507 1675 184 33 0 chr3 120893295 120893594 -38706189 - RLTR27 LTR ERVK 0 309 1 6 1507 255 270 95 0 chr3 120893723 120893797 -38705986 - PB1D10 SINE Alu 0 117 37 6 1507 391 250 0 0 chr3 120894003 120894083 -38705700 - ID4 SINE ID -2 81 2 6 1507 22 35 0 0 chr3 120894093 120894122 -38705661 + AT_rich Low_complexity Low_complexity 1 29 0 6 1507 673 287 132 48 chr3 120894380 120894669 -38705114 + MLT1A0 LTR MaLR 15 327 -38 6 1507 302 276 0 13 chr3 120894833 120894910 -38704873 + RSINE1 SINE B4 4 79 -86 6 1507 323 215 24 37 chr3 120894944 120895108 -38704675 + CT-rich Low_complexity Low_complexity 1 162 0 6 1507 395 212 201 14 chr3 120895147 120895286 -38704497 + ID_B1 SINE B4 1 165 -59 6 1507 442 318 44 38 chr3 120895371 120895554 -38704229 - B3A SINE B2 -14 184 1 6 1507 194 359 34 44 chr3 120895701 120895905 -38703878 + L2a LINE L2 2499 2700 -719 6 1507 287 325 104 10 chr3 120895905 120896107 -38703676 + MER112 DNA MER1_type 6 226 -35 6 1507 378 0 0 0 chr3 120896111 120896153 -38703630 + (TAA)n Simple_repeat Simple_repeat 2 43 0 6 1507 236 281 67 62 chr3 120896441 120896619 -38703164 + L2a LINE L2 3198 3376 -50 6 1507 768 264 11 0 chr3 120896696 120896874 -38702909 + B4 SINE B4 2 181 -111 6 1507 317 179 0 0 chr3 120897009 120897065 -38702718 + B2_Mm2 SINE B2 1 56 -139 6 1507 22 0 0 0 chr3 120897369 120897391 -38702392 + AT_rich Low_complexity Low_complexity 1 22 0 6 1507 580 246 94 80 chr3 120897583 120897870 -38701913 + B4A SINE B4 2 292 0 6 1507 291 54 0 0 chr3 120897884 120897921 -38701862 + (CA)n Simple_repeat Simple_repeat 1 37 0 6 1507 255 170 0 0 chr3 120899024 120899071 -38700712 + T-rich Low_complexity Low_complexity 1 47 0 6 1507 7607 66 10 6 chr3 120899083 120899770 -38700013 - L1_Mus2 LINE L1 0 6566 5882 6 1507 3632 10 2 0 chr3 120899770 120900165 -38699618 - MTA_Mm LTR MaLR 0 396 1 6 1507 7607 66 12 3 chr3 120900165 120900675 -38699108 - L1_Mus2 LINE L1 -2 5881 5365 6 1507 9220 92 3 5 chr3 120900670 120901948 -38697835 + L1_Mus2 LINE L1 4095 5370 -513 6 1507 554 197 8 8 chr3 120902308 120902426 -38697357 - B1_Mur3 SINE Alu -31 118 1 6 1507 1184 55 7 0 chr3 120903199 120903345 -38696438 + B1_Mus2 SINE Alu 1 147 0 6 1507 486 151 52 7 chr3 120910428 120910533 -38689250 - IAPEY3_LTR LTR ERVK -224 103 1 6 1507 392 277 0 62 chr3 120910762 120910915 -38688868 + B4A SINE B4 117 260 -32 6 1507 384 22 0 0 chr3 120910915 120910960 -38688823 + (CA)n Simple_repeat Simple_repeat 1 45 0 6 1507 392 277 0 62 chr3 120910960 120910983 -38688800 + B4A SINE B4 261 282 -10 6 1507 325 284 93 71 chr3 120911232 120911430 -38688353 + L1MC LINE L1 4977 5173 -973 6 1507 571 190 34 40 chr3 120911430 120911578 -38688205 + B1_Mur3 SINE Alu 2 148 -1 6 1507 325 284 93 71 chr3 120911578 120911672 -38688111 + L1MC LINE L1 5174 5273 -873 6 1507 1314 83 5 54 chr3 120911672 120911875 -38687908 + B2_Mm2 SINE B2 2 194 -1 6 1507 325 284 93 71 chr3 120911875 120911903 -38687880 + L1MC LINE L1 5274 5304 -842 6 1507 299 0 0 0 chr3 120911910 120911946 -38687837 - U2 snRNA snRNA -152 36 1 6 1507 236 180 80 0 chr3 120912226 120912276 -38687507 + L1MD LINE L1 5556 5609 -2386 6 1507 298 326 22 22 chr3 120912797 120912932 -38686851 + LTR80B LTR ERVL 449 583 0 6 1507 315 272 87 9 chr3 120913458 120913573 -38686210 + L1MD3 LINE L1 7353 7476 -519 6 1507 298 301 41 62 chr3 120913632 120913827 -38685956 + L1MD3 LINE L1 7471 7661 -221 6 1507 712 246 12 5 chr3 120914418 120914605 -38685178 - B3 SINE B2 -6 192 1 6 1507 291 54 0 0 chr3 120915026 120915063 -38684720 + (CA)n Simple_repeat Simple_repeat 2 38 0 6 1507 1265 112 17 6 chr3 120915197 120915376 -38684407 - B2_Mm2 SINE B2 -14 181 1 6 1507 261 0 0 0 chr3 120915473 120915502 -38684281 + (CA)n Simple_repeat Simple_repeat 2 30 0 6 1507 438 292 129 5 chr3 120916738 120916931 -38682852 - ID_B1 SINE B4 -1 223 7 6 1507 201 151 74 19 chr3 120917265 120917319 -38682464 + (TTAAG)n Simple_repeat Simple_repeat 3 59 0 6 1507 582 267 199 13 chr3 120918078 120918389 -38681394 - MLT1C LTR MaLR -79 388 20 6 1507 365 123 15 0 chr3 120918497 120918562 -38681221 + (TA)n Simple_repeat Simple_repeat 1 66 0 6 1507 471 177 0 0 chr3 120919079 120919158 -38680625 + B3A SINE B2 1 79 -119 6 1507 270 318 93 23 chr3 120919158 120919208 -38680575 + B4A SINE B4 1 138 -154 6 1507 21 0 0 0 chr3 120919211 120919232 -38680551 + AT_rich Low_complexity Low_complexity 1 21 0 6 1507 203 132 53 0 chr3 120919752 120919790 -38679993 + (TCTG)n Simple_repeat Simple_repeat 3 42 0 6 1507 402 239 43 78 chr3 120919801 120919942 -38679841 - ID_B1 SINE B4 -3 221 86 6 1507 905 228 19 19 chr3 120920297 120920503 -38679280 - B3 SINE B2 -7 209 4 6 1507 266 275 14 14 chr3 120921068 120921138 -38678645 - RSINE1 SINE B4 -92 73 4 6 1507 335 302 28 9 chr3 120921404 120921511 -38678272 + MER5A DNA MER1_type 60 168 -21 6 1507 229 315 64 35 chr3 120921953 120922124 -38677659 + MLT1H1 LTR MaLR 37 212 -343 6 1507 821 99 8 0 chr3 120922360 120922481 -38677302 - B1_Mus2 SINE Alu -20 127 6 6 1507 24 0 0 0 chr3 120922813 120922837 -38676946 + AT_rich Low_complexity Low_complexity 1 24 0 6 1507 385 206 102 56 chr3 120922857 120922965 -38676818 - PB1D9 SINE Alu -6 114 2 6 1507 285 98 0 0 chr3 120923119 120923160 -38676623 + (T)n Simple_repeat Simple_repeat 1 41 0 6 1507 1087 50 50 0 chr3 120923160 120923300 -38676483 - B1_Mus1 SINE Alu 0 148 2 6 1507 331 270 33 33 chr3 120923368 120923460 -38676323 - PB1D10 SINE Alu -7 110 19 6 1507 480 62 0 0 chr3 120923540 120923604 -38676179 + (CA)n Simple_repeat Simple_repeat 2 65 0 6 1507 323 318 36 0 chr3 120924323 120924433 -38675350 - L1MB4 LINE L1 -163 6017 5904 6 1507 214 211 173 0 chr3 120925448 120925500 -38674283 + B1_Mur4 SINE Alu 54 114 -36 6 1507 718 73 0 18 chr3 120925508 120925620 -38674163 + (GGGGA)n Simple_repeat Simple_repeat 4 113 0 6 1507 284 200 63 53 chr3 120925825 120925920 -38673863 + RLTR25B LTR ERVK 414 509 -519 6 1507 802 73 0 0 chr3 120925854 120925963 -38673820 + B1_Mus1 SINE Alu 40 148 0 6 1507 267 31 0 0 chr3 120925963 120925995 -38673788 + (A)n Simple_repeat Simple_repeat 1 32 0 6 1507 286 355 67 30 chr3 120926551 120926821 -38672962 - B4A SINE B4 -12 280 1 6 1507 800 177 49 7 chr3 120926915 120927057 -38672726 + B1_Mur2 SINE Alu 1 148 -1 7 1507 265 366 81 0 chr3 120927266 120927427 -38672356 - B4 SINE B4 -86 206 33 7 1507 246 208 0 0 chr3 120927884 120927937 -38671846 + A-rich Low_complexity Low_complexity 1 53 0 7 1507 1059 177 60 5 chr3 120927989 120928188 -38671595 + B3 SINE B2 1 210 -6 7 1507 357 252 19 39 chr3 120928445 120928548 -38671235 + B4 SINE B4 3 103 -189 7 1507 256 258 0 15 chr3 120928569 120928636 -38671147 + (CA)n Simple_repeat Simple_repeat 1 66 0 7 1507 926 237 25 5 chr3 120928661 120928860 -38670923 + B3 SINE B2 1 203 -13 7 1507 398 152 0 0 chr3 120929853 120929919 -38669864 + B1_Mur4 SINE Alu 25 90 -60 7 1507 548 198 0 0 chr3 120930964 120931070 -38668713 + B1_Mus2 SINE Alu 30 135 -12 7 1507 293 0 27 0 chr3 120931071 120931108 -38668675 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 7 1507 180 0 0 0 chr3 120931510 120931530 -38668253 + (TC)n Simple_repeat Simple_repeat 2 21 0 7 1507 368 225 89 32 chr3 120931901 120932025 -38667758 - ID_B1 SINE B4 -7 217 87 7 1507 195 42 0 0 chr3 120932471 120932495 -38667288 + (CA)n Simple_repeat Simple_repeat 1 24 0 7 1507 407 273 50 43 chr3 120932862 120933023 -38666760 - RSINE1 SINE B4 0 165 4 7 1507 303 250 0 0 chr3 120933165 120933249 -38666534 + (TA)n Simple_repeat Simple_repeat 2 85 0 7 1507 267 291 25 0 chr3 120934418 120934497 -38665286 + ID4_ SINE ID 1 81 -2 7 1507 716 197 28 0 chr3 120934511 120934653 -38665130 + B1_Mur1 SINE Alu 2 147 -2 7 1507 273 271 14 0 chr3 120934883 120934953 -38664830 - ID4 SINE ID -11 72 2 7 1507 261 0 0 0 chr3 120935203 120935232 -38664551 + (TTG)n Simple_repeat Simple_repeat 2 30 0 7 1507 283 324 8 51 chr3 120935236 120935353 -38664430 - PB1D10 SINE Alu -1 119 8 7 1507 459 248 22 72 chr3 120935366 120935505 -38664278 - ID_B1 SINE B4 -88 136 5 7 1507 787 169 41 21 chr3 120936157 120936302 -38663481 - B1_Mur4 SINE Alu -1 149 2 7 1507 228 23 67 22 chr3 120936993 120937038 -38662745 + (CAAAAA)n Simple_repeat Simple_repeat 2 48 0 7 1507 622 260 64 39 chr3 120937268 120937472 -38662311 + B3 SINE B2 2 210 -6 7 1507 701 262 24 12 chr3 120937588 120937758 -38662025 - B3 SINE B2 -41 175 4 7 1507 252 318 23 0 chr3 120938575 120938663 -38661120 + MIR3 SINE MIR 93 182 -26 7 1507 512 275 14 107 chr3 120938798 120939014 -38660769 + B3A SINE B2 3 198 0 7 1507 621 169 136 15 chr3 120939017 120939149 -38660634 + B1_Mur4 SINE Alu 2 149 -1 7 1507 527 0 16 0 chr3 120939152 120939215 -38660568 + (TAGA)n Simple_repeat Simple_repeat 2 65 0 7 1507 474 118 26 0 chr3 120939224 120939300 -38660483 + B1_Mur3 SINE Alu 62 139 -10 7 1507 249 33 0 0 chr3 120939300 120939330 -38660453 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 7 1507 21 36 0 0 chr3 120939443 120939471 -38660312 + AT_rich Low_complexity Low_complexity 1 28 0 7 1507 252 273 0 0 chr3 120939514 120939591 -38660192 + (CA)n Simple_repeat Simple_repeat 1 77 0 7 1507 467 195 131 15 chr3 120939653 120939783 -38660000 + B1_Mm SINE Alu 2 146 -1 7 1507 401 191 0 110 chr3 120940653 120940735 -38659048 + B1_Mur2 SINE Alu 2 74 -75 7 1507 279 0 0 0 chr3 120940735 120940766 -38659017 + (CAGA)n Simple_repeat Simple_repeat 4 34 0 7 1507 401 222 10 96 chr3 120940766 120940810 -38658973 + B1_Mur2 SINE Alu 75 119 -1 7 1507 1489 52 5 20 chr3 120940814 120941010 -38658773 + B2_Mm1a SINE B2 1 193 0 7 1507 186 103 0 0 chr3 120941022 120941051 -38658732 + (A)n Simple_repeat Simple_repeat 1 29 0 7 1507 558 259 30 48 chr3 120941064 120941230 -38658553 + RSINE1 SINE B4 3 165 0 7 1507 193 197 16 16 chr3 120941231 120941293 -38658490 + (CA)n Simple_repeat Simple_repeat 1 62 0 7 1507 35 0 0 0 chr3 120941307 120941342 -38658441 + AT_rich Low_complexity Low_complexity 1 35 0 7 1507 25 0 0 0 chr3 120941387 120941412 -38658371 + AT_rich Low_complexity Low_complexity 1 25 0 7 1507 1164 44 0 0 chr3 120941420 120941555 -38658228 + B1_Mm SINE Alu 2 136 -11 7 1507 966 209 5 52 chr3 120941566 120941778 -38658005 - B3 SINE B2 -14 202 1 7 1507 975 18 0 0 chr3 120942649 120942762 -38657021 + (TG)n Simple_repeat Simple_repeat 2 114 0 7 1507 590 245 128 64 chr3 120942951 120943169 -38656614 - B4 SINE B4 -39 253 22 7 1507 221 91 45 0 chr3 120944198 120944242 -38655541 + (CAGAGA)n Simple_repeat Simple_repeat 3 48 0 7 1507 796 259 59 9 chr3 120944891 120945113 -38654670 + ORR1D2 LTR MaLR 134 366 -4 7 1507 21 36 0 0 chr3 120945514 120945542 -38654241 + AT_rich Low_complexity Low_complexity 1 28 0 7 1507 496 276 95 14 chr3 120945543 120945690 -38654093 - RSINE1 SINE B4 -5 160 2 7 1507 388 283 81 0 chr3 120945753 120945852 -38653931 + MTEb LTR MaLR 1 107 -272 7 1507 484 256 113 19 chr3 120945842 120946001 -38653782 - MTE-int LTR MaLR -901 679 506 7 1507 525 266 169 2 chr3 120946015 120946180 -38653603 + MTEb LTR MaLR 161 379 0 7 1507 618 151 13 14 chr3 120946276 120946398 -38653385 + B1_Mur4 SINE Alu 3 150 0 7 1507 1180 69 7 0 chr3 120947845 120947990 -38651793 - B1_Mm SINE Alu 0 147 2 7 1507 3727 49 0 7 chr3 120948093 120948545 -38651238 + L1_Mus1 LINE L1 6116 6564 -3 7 1507 265 245 60 86 chr3 120948981 120949097 -38650686 - PB1D10 SINE Alu 0 117 5 7 1507 829 258 9 23 chr3 120949101 120949319 -38650464 - B3 SINE B2 -1 215 1 7 1507 459 0 0 0 chr3 120949499 120949550 -38650233 + (TG)n Simple_repeat Simple_repeat 2 52 0 7 1507 219 208 226 0 chr3 120949631 120949684 -38650099 - B1_Mur2 SINE Alu 0 149 85 7 1507 1577 31 10 20 chr3 120950024 120950219 -38649564 + B2_Mm1t SINE B2 1 193 0 7 1507 325 297 10 10 chr3 120951003 120951105 -38648678 - B1F SINE Alu -47 102 1 7 1507 227 207 65 109 chr3 120951217 120951309 -38648474 - LTR85a LTR Gypsy? -554 148 61 7 1507 1187 82 0 0 chr3 120951550 120951697 -38648086 - B1_Mus1 SINE Alu 0 148 2 7 1507 1631 52 0 0 chr3 120951707 120951900 -38647883 - B2_Mm1a SINE B2 0 193 1 7 1507 186 43 0 0 chr3 120952338 120952361 -38647422 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 7 1507 552 42 0 0 chr3 120952458 120952529 -38647254 + (CA)n Simple_repeat Simple_repeat 1 71 0 7 1507 2180 33 0 0 chr3 120952698 120952943 -38646840 - LSU-rRNA_Hsa rRNA rRNA -1122 3913 3669 7 1507 540 144 114 35 chr3 120954478 120954610 -38645173 + PB1D9 SINE Alu 3 148 -1 7 1507 294 179 0 0 chr3 120954610 120954666 -38645117 + GA-rich Low_complexity Low_complexity 2 57 0 7 1507 1103 111 41 0 chr3 120954731 120954903 -38644880 + B2_Mm1t SINE B2 1 179 -14 7 1507 337 101 330 37 chr3 120954957 120955066 -38644717 + B2_Mm2 SINE B2 47 187 -8 7 1507 275 319 53 47 chr3 120955205 120955376 -38644407 + MLT1H LTR MaLR 59 230 -319 7 1507 4495 66 8 35 chr3 120955522 120956122 -38643661 - MT2B2 LTR ERVL 0 584 1 7 1507 427 318 7 22 chr3 120956210 120956345 -38643438 + ID_B1 SINE B4 88 220 -4 7 1507 444 184 211 44 chr3 120956361 120956475 -38643308 + B1_Mur1 SINE Alu 3 135 -14 7 1507 273 267 34 0 chr3 120956481 120956627 -38643156 + ORR1B1-int LTR MaLR 604 754 -755 7 1507 1023 105 0 14 chr3 120956524 120956669 -38643114 + B1_Mus1 SINE Alu 6 148 0 7 1507 231 167 0 0 chr3 120956682 120956724 -38643059 + GA-rich Low_complexity Low_complexity 1 42 0 7 1507 263 254 181 16 chr3 120956915 120957103 -38642680 + L1MA4 LINE L1 5150 5368 -775 7 1507 1207 114 17 0 chr3 120957104 120957279 -38642504 + B2_Mm1t SINE B2 1 178 -15 7 1507 1235 48 0 0 chr3 120957282 120957427 -38642356 + B1_Mus1 SINE Alu 2 146 -2 7 1507 180 0 0 0 chr3 120957427 120957447 -38642336 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 7 1507 362 147 0 14 chr3 120957451 120957520 -38642263 + GA-rich Low_complexity Low_complexity 4 71 0 7 1507 792 286 182 19 chr3 120957520 120958010 -38641773 + L1MA4 LINE L1 5352 5930 -370 7 1507 389 218 33 42 chr3 120958602 120958719 -38641064 - B1_Mur2 SINE Alu 0 149 14 7 1507 592 250 64 0 chr3 120959410 120959566 -38640217 - B4A SINE B4 -2 290 125 7 1507 331 209 2 16 chr3 120959813 120959883 -38639900 - ID4 SINE ID -75 77 8 7 1507 531 112 0 0 chr3 120959888 120959986 -38639797 + (TATG)n Simple_repeat Simple_repeat 2 99 0 7 1507 396 325 83 0 chr3 120959994 120960114 -38639669 - ID_B1 SINE B4 -14 210 81 7 1507 407 233 94 25 chr3 120960125 120960239 -38639544 - PB1 SINE Alu -1 126 4 7 1507 23 0 0 0 chr3 120960433 120960456 -38639327 + AT_rich Low_complexity Low_complexity 1 23 0 7 1507 450 290 10 1 chr3 120960590 120960705 -38639078 + B4A SINE B4 131 245 -47 7 1507 625 129 151 25 chr3 120960712 120960831 -38638952 + B1_Mur2 SINE Alu 15 148 -1 7 1507 809 133 55 0 chr3 120960939 120961067 -38638716 + B1_Mus1 SINE Alu 1 135 -13 7 1507 812 82 0 15 chr3 120961093 120961229 -38638554 + (GAAAA)n Simple_repeat Simple_repeat 2 135 0 7 1507 198 0 0 0 chr3 120961264 120961286 -38638497 + (TAA)n Simple_repeat Simple_repeat 3 24 0 7 1507 198 0 0 0 chr3 120962248 120962270 -38637513 + (CGAGG)n Simple_repeat Simple_repeat 1 22 0 7 1507 26 30 0 0 chr3 120965379 120965412 -38634371 + GC_rich Low_complexity Low_complexity 1 33 0 7 1507 23 33 0 0 chr3 120965792 120965822 -38633961 + GC_rich Low_complexity Low_complexity 1 30 0 7 1507 289 196 71 0 chr3 120966445 120966501 -38633282 + ID4 SINE ID 24 83 0 7 1507 181 75 50 0 chr3 120966570 120966610 -38633173 + (TTTTTG)n Simple_repeat Simple_repeat 3 44 0 7 1507 233 130 109 0 chr3 120967754 120967800 -38631983 - ID_B1 SINE B4 -8 216 166 7 1507 1007 175 21 11 chr3 120968101 120968292 -38631491 + B2_Mm2 SINE B2 3 195 0 8 1507 1243 48 0 0 chr3 120968487 120968634 -38631149 - B1_Mus2 SINE Alu 0 147 1 8 1507 278 296 14 0 chr3 120968686 120968757 -38631026 + ID4 SINE ID 2 73 -10 8 1507 440 167 10 0 chr3 120968758 120968854 -38630929 + G-rich Low_complexity Low_complexity 3 99 0 8 1507 301 339 47 13 chr3 120969300 120969533 -38630250 - HAL1 LINE L1 -194 2313 2073 8 1507 613 261 8 90 chr3 120970071 120970315 -38629468 + B4A SINE B4 69 292 0 8 1507 309 284 0 13 chr3 120970734 120970809 -38628974 - 5S rRNA rRNA -32 89 16 8 1507 644 240 0 47 chr3 120970884 120971011 -38628772 + RSINE1 SINE B4 2 122 -43 8 1507 235 231 0 0 chr3 120971022 120971061 -38628722 - ID_B1 SINE B4 -37 187 149 7 1507 5779 80 9 13 chr3 120971061 120971855 -38627928 - L1_Mus3 LINE L1 -1 6637 5847 8 1507 7180 116 9 16 chr3 120971855 120972965 -38626818 + L1_Mm LINE L1 4341 5442 -441 8 1507 337 183 14 14 chr3 120972965 120973037 -38626746 - ID_B1 SINE B4 -68 156 85 7 1507 224 274 54 62 chr3 120973118 120973219 -38626564 + MIRc SINE MIR 57 157 -111 8 1507 326 266 66 74 chr3 120973340 120973462 -38626321 + B1F SINE Alu 29 149 0 8 1507 397 351 82 14 chr3 120973560 120973768 -38626015 + B4A SINE B4 45 266 -26 8 1507 222 128 0 0 chr3 120974983 120975022 -38624761 + (CA)n Simple_repeat Simple_repeat 2 40 0 8 1507 455 230 239 0 chr3 120975098 120975211 -38624572 - B1_Mus2 SINE Alu -4 143 4 8 1507 360 243 213 7 chr3 120975494 120975635 -38624148 - MER58A DNA MER1_type -18 206 37 8 1507 215 255 147 52 chr3 120975641 120975757 -38624026 + L2 LINE L2 2766 2892 -527 8 1507 441 0 0 0 chr3 120976135 120976184 -38623599 + (GA)n Simple_repeat Simple_repeat 2 50 0 8 1507 198 0 0 0 chr3 120976197 120976219 -38623564 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 8 1507 197 205 0 0 chr3 120976930 120976969 -38622814 - MIR SINE MIR -114 148 110 8 1507 415 240 92 20 chr3 120976996 120977094 -38622689 + PB1D10 SINE Alu 13 117 0 8 1507 297 331 84 4 chr3 120977262 120977447 -38622336 - MLT1H LTR MaLR 0 624 283 8 1507 1388 99 16 0 chr3 120977597 120977788 -38621995 - B2_Mm2 SINE B2 0 195 2 8 1507 546 320 70 44 chr3 120977909 120978180 -38621603 - MLT1H LTR MaLR -260 289 12 8 1507 1603 123 38 19 chr3 120978582 120978846 -38620937 - MTC LTR MaLR -1 420 152 8 1507 2172 160 40 0 chr3 120978838 120979188 -38620595 + MTC LTR MaLR 58 421 0 8 1507 502 139 174 0 chr3 120979188 120979272 -38620511 - MTC LTR MaLR -317 104 1 8 1508 355 311 84 12 chr3 120979538 120979704 -38620079 + LTR48B LTR ERV1 94 271 -373 8 1508 943 68 252 0 chr3 120981547 120981694 -38618089 - B2_Mm1t SINE B2 -8 185 2 8 1508 532 246 81 38 chr3 120982674 120982885 -38616898 + B4A SINE B4 54 273 -19 8 1508 1353 32 0 0 chr3 120983408 120983565 -38616218 - L1Md_F2 LINE L1 -712 5870 5714 8 1508 5799 44 4 24 chr3 120983565 120984288 -38615495 + L1Md_F2 LINE L1 5862 6570 -12 8 1508 359 316 32 0 chr3 120984690 120984785 -38614998 - PB1D10 SINE Alu -9 108 11 8 1508 516 259 34 8 chr3 120984806 120984923 -38614860 - PB1D7 SINE Alu 0 120 1 8 1508 300 53 0 0 chr3 120984971 120985009 -38614774 + (CAGA)n Simple_repeat Simple_repeat 4 41 0 8 1508 755 249 126 10 chr3 120985018 120985217 -38614566 + ID_B1 SINE B4 3 224 0 8 1508 512 342 80 21 chr3 120985354 120985557 -38614226 + MIR SINE MIR 20 242 -26 8 1508 441 155 66 85 chr3 120986628 120986734 -38613049 + MT2B LTR ERVL 154 257 -344 8 1508 605 181 3 16 chr3 120986645 120986760 -38613023 + B1_Mus1 SINE Alu 14 119 -1 8 1508 1177 163 39 15 chr3 120987315 120987521 -38612262 - MT2B LTR ERVL 0 601 391 8 1508 1231 53 0 0 chr3 120987856 120988008 -38611775 + B2_Mm2 SINE B2 2 153 -42 8 1508 198 0 0 0 chr3 120988008 120988030 -38611753 + (TAAA)n Simple_repeat Simple_repeat 4 25 0 8 1508 1035 132 6 35 chr3 120988030 120988050 -38611733 + B2_Mm1t SINE B2 154 169 -24 8 1508 236 347 0 0 chr3 120988056 120988131 -38611652 + ID4 SINE ID 7 81 -2 8 1508 1304 224 49 43 chr3 120988491 120988859 -38610924 - ORR1D2 LTR MaLR 0 370 1 8 1508 1174 265 166 0 chr3 120988980 120989305 -38610478 + MTEa LTR MaLR 1 379 0 8 1508 817 105 75 80 chr3 120989330 120989517 -38610266 - B2_Mm2 SINE B2 -8 187 2 8 1508 1169 75 0 0 chr3 120989637 120989784 -38609999 - B1_Mus1 SINE Alu 0 148 2 8 1508 390 115 0 0 chr3 120989784 120989836 -38609947 + tRNA-Lys-AAG tRNA tRNA 23 74 -2 8 1508 1327 100 21 0 chr3 120989842 120990032 -38609751 + B2_Mm2 SINE B2 2 195 0 8 1508 477 151 0 14 chr3 120990069 120990143 -38609640 + tRNA-Lys-AAG tRNA tRNA 1 73 -3 8 1508 1335 71 0 42 chr3 120990172 120990364 -38609419 + B2_Mm2 SINE B2 2 185 -10 8 1508 312 290 122 0 chr3 120990372 120990479 -38609304 - MER3 DNA MER1_type -89 120 1 8 1508 306 322 100 27 chr3 120990486 120990636 -38609147 + L2 LINE L2 2277 2437 -982 8 1508 783 204 67 22 chr3 120990759 120990939 -38608844 - B3A SINE B2 -1 197 10 8 1508 211 246 16 16 chr3 120990886 120990948 -38608835 - B4A SINE B4 -230 62 1 8 1508 186 360 121 7 chr3 120990994 120991134 -38608649 + L2 LINE L2 2567 2722 -697 8 1508 1081 75 0 0 chr3 120991207 120991341 -38608442 + B1_Mus1 SINE Alu 2 135 -13 8 1508 310 21 21 21 chr3 120991341 120991389 -38608394 + (CAAA)n Simple_repeat Simple_repeat 1 48 0 8 1508 324 289 30 83 chr3 120991515 120991647 -38608136 - ID_B1 SINE B4 0 224 100 8 1508 246 348 56 28 chr3 120991525 120991667 -38608116 - B1F SINE Alu -3 146 1 8 1508 2783 66 143 139 chr3 120991919 120992429 -38607354 - RLTR1B LTR ERV1 0 512 1 8 1508 293 136 62 92 chr3 120993044 120993056 -38606727 - B4A SINE B4 -12 280 272 8 1508 225 94 0 0 chr3 120993056 120993088 -38606695 + (TG)n Simple_repeat Simple_repeat 1 32 0 8 1508 293 136 62 92 chr3 120993088 120993140 -38606643 - B4A SINE B4 -21 271 218 8 1508 925 204 43 10 chr3 120993156 120993364 -38606419 - B3 SINE B2 -1 215 1 8 1508 1473 50 28 0 chr3 120995760 120995941 -38603842 - B2_Mm1t SINE B2 -7 186 1 8 1508 611 174 37 0 chr3 120996623 120996732 -38603051 + B3 SINE B2 3 115 -101 8 1508 498 206 0 11 chr3 120997189 120997282 -38602501 + B3 SINE B2 116 207 -9 8 1508 905 138 25 0 chr3 120997280 120997440 -38602343 - B2_Mm2 SINE B2 -37 179 3 8 1508 1308 104 27 21 chr3 120997473 120997660 -38602123 + B2_Mm2 SINE B2 1 188 -7 8 1508 695 190 172 11 chr3 120997849 120998035 -38601748 - B3 SINE B2 0 216 1 8 1508 979 276 81 7 chr3 120998805 120999090 -38600693 + MER2 DNA MER2_type 25 330 -15 8 1508 1219 61 0 0 chr3 120999111 120999258 -38600525 - B1_Mus2 SINE Alu 0 147 1 8 1508 707 246 57 47 chr3 120999282 120999474 -38600309 - B3A SINE B2 -4 194 1 8 1508 854 209 0 0 chr3 120999497 120999645 -38600138 - B1_Mur4 SINE Alu 0 150 3 8 1508 1420 62 11 11 chr3 120999667 120999847 -38599936 - B2_Mm2 SINE B2 -14 181 2 8 1508 960 86 35 28 chr3 120999856 121000000 -38599783 - B2_Mm2 SINE B2 -8 187 43 8 1508 307 49 0 0 chr3 121000000 121000041 -38599742 - B2_Mm2 SINE B2 -153 42 2 1 1508 823 163 13 20 chr3 121000886 121001036 -38598747 - B1_Mur4 SINE Alu -1 149 1 2 1508 387 266 154 71 chr3 121001041 121001223 -38598560 - B3A SINE B2 0 198 2 3 1508 504 32 0 0 chr3 121001259 121001321 -38598462 + (TG)n Simple_repeat Simple_repeat 2 63 0 4 1508 389 238 320 0 chr3 121001324 121001459 -38598324 - B3 SINE B2 -33 183 6 5 1508 274 128 0 0 chr3 121002205 121002244 -38597539 - RMER6C LTR ERVK -37 653 615 6 1508 1491 42 3 0 chr3 121002300 121002967 -38596816 + (CCA)n Simple_repeat Simple_repeat 1 669 0 7 1508 185 0 40 0 chr3 121003866 121003891 -38595892 + (GTTTG)n Simple_repeat Simple_repeat 2 27 0 8 1508 380 134 0 46 chr3 121003894 121003976 -38595807 - B1_Mur4 SINE Alu 0 150 51 9 1508 800 150 287 0 chr3 121004035 121004202 -38595581 - B3 SINE B2 -1 215 1 1 1508 26 0 0 0 chr3 121004685 121004711 -38595072 + AT_rich Low_complexity Low_complexity 1 26 0 1 1508 15886 120 7 13 chr3 121005054 121008422 -38591361 - Lx LINE L1 -5 6649 3303 1 1508 182 92 14 84 chr3 121008601 121008672 -38591111 + T-rich Low_complexity Low_complexity 1 66 0 1 1508 1234 54 0 0 chr3 121008673 121008820 -38590963 - B1_Mm SINE Alu 0 147 1 1 1508 716 110 55 0 chr3 121008821 121008930 -38590853 - B1_Mur2 SINE Alu 0 149 35 1 1508 375 23 0 0 chr3 121009537 121009581 -38590202 + (TTG)n Simple_repeat Simple_repeat 2 45 0 1 1508 758 132 16 8 chr3 121009581 121009703 -38590080 - B1_Mur4 SINE Alu -26 124 2 1 1508 830 261 0 19 chr3 121009705 121009912 -38589871 - B3 SINE B2 -9 207 5 1 1508 813 213 32 62 chr3 121010033 121010256 -38589527 + B3 SINE B2 2 211 -5 1 1508 198 0 0 0 chr3 121010298 121010320 -38589463 + (TG)n Simple_repeat Simple_repeat 1 22 0 2 1508 240 341 0 47 chr3 121010947 121011033 -38588750 + ID4_ SINE ID 2 83 0 2 1508 840 242 137 25 chr3 121011507 121011748 -38588035 + B4A SINE B4 2 269 -23 2 1508 370 75 30 0 chr3 121011748 121011815 -38587968 + (CA)n Simple_repeat Simple_repeat 2 70 0 2 1508 182 316 12 84 chr3 121012102 121012185 -38587598 + L2c LINE L2 3145 3221 -166 2 1508 385 320 19 89 chr3 121012345 121012558 -38587225 - MER20 DNA MER1_type -21 198 1 2 1508 23 33 0 0 chr3 121012757 121012787 -38586996 + AT_rich Low_complexity Low_complexity 1 30 0 2 1508 466 290 122 33 chr3 121012907 121013121 -38586662 + HAL1 LINE L1 1234 1466 -1041 2 1508 286 52 12 105 chr3 121013624 121013710 -38586073 + T-rich Low_complexity Low_complexity 2 79 0 2 1508 1009 128 7 26 chr3 121013711 121013864 -38585919 - B1_Mur4 SINE Alu 0 150 1 2 1508 1325 217 31 108 chr3 121013932 121014376 -38585407 + RMER17C LTR ERVK 1 410 0 3 1508 3566 25 0 0 chr3 121014381 121014777 -38585006 + MTA_Mm LTR MaLR 1 396 0 3 1508 377 296 148 0 chr3 121015600 121015742 -38584041 - RSINE1 SINE B4 0 165 3 3 1508 21 0 0 0 chr3 121015773 121015794 -38583989 + AT_rich Low_complexity Low_complexity 1 21 0 3 1508 327 269 27 18 chr3 121015857 121015967 -38583816 + PB1D10 SINE Alu 1 111 -6 3 1508 680 300 55 30 chr3 121015987 121016224 -38583559 + B4A SINE B4 28 270 -22 3 1508 576 0 0 0 chr3 121016238 121016302 -38583481 + (TC)n Simple_repeat Simple_repeat 2 65 0 3 1508 207 0 0 0 chr3 121017156 121017179 -38582604 + (A)n Simple_repeat Simple_repeat 1 23 0 3 1508 301 256 23 47 chr3 121017879 121017965 -38581818 + PB1D10 SINE Alu 12 95 -22 3 1508 2258 111 36 3 chr3 121019011 121019346 -38580437 - ORR1A1 LTR MaLR 0 346 1 3 1508 201 244 0 0 chr3 121019663 121019704 -38580079 + G-rich Low_complexity Low_complexity 6 46 0 4 1508 697 168 0 155 chr3 121019774 121019929 -38579854 + B1_Mur4 SINE Alu 13 143 -7 4 1508 210 178 22 0 chr3 121019931 121019976 -38579807 + GA-rich Low_complexity Low_complexity 4 49 0 4 1508 189 121 0 0 chr3 121019994 121020027 -38579756 + (CAA)n Simple_repeat Simple_repeat 1 33 0 4 1508 219 328 130 0 chr3 121020409 121020586 -38579197 - L2a LINE L2 -15 3411 3212 4 1508 588 341 28 20 chr3 121020789 121021040 -38578743 - L2a LINE L2 -493 2926 2674 4 1508 3720 179 118 67 chr3 121021193 121022040 -38577743 + RMER19B LTR ERVK 1 890 -12 4 1508 23 68 0 0 chr3 121022106 121022150 -38577633 + AT_rich Low_complexity Low_complexity 1 44 0 4 1508 346 265 167 25 chr3 121022370 121022490 -38577293 - RSINE1 SINE B4 -9 156 20 4 1508 244 289 78 13 chr3 121022495 121022572 -38577211 - L1M5 LINE L1 -559 5565 5484 4 1508 438 269 100 30 chr3 121022593 121022839 -38576944 - L1M5 LINE L1 -697 5427 5168 4 1508 1585 131 205 40 chr3 121023689 121024040 -38575743 - RLTR9E LTR ERVK 0 409 1 4 1508 437 229 160 30 chr3 121024349 121024551 -38575232 - L1ME2 LINE L1 -279 6165 5943 5 1508 1358 168 9 0 chr3 121024573 121024787 -38574996 - B3 SINE B2 0 216 1 5 1508 787 199 122 0 chr3 121025229 121025410 -38574373 + B3 SINE B2 4 206 -10 5 1508 699 171 76 76 chr3 121025521 121025705 -38574078 - B2_Mm2 SINE B2 -8 187 4 5 1508 830 171 7 14 chr3 121025802 121025950 -38573833 + B1_Mur2 SINE Alu 3 149 0 5 1508 1456 78 16 0 chr3 121027033 121027225 -38572558 - B2_Mm2 SINE B2 0 195 1 5 1508 459 0 0 0 chr3 121027564 121027615 -38572168 + (TG)n Simple_repeat Simple_repeat 1 51 0 5 1508 445 213 98 112 chr3 121027853 121027996 -38571787 - B1_Mur3 SINE Alu 0 149 9 5 1508 218 354 88 76 chr3 121027863 121028034 -38571749 - B4A SINE B4 -68 224 52 5 1508 246 237 0 0 chr3 121028552 121028628 -38571155 + (TA)n Simple_repeat Simple_repeat 1 76 0 5 1508 273 280 29 29 chr3 121028658 121028761 -38571022 - L1MA5 LINE L1 -372 5928 5826 6 1508 1425 69 5 26 chr3 121028761 121028954 -38570829 + B2_Mm2 SINE B2 2 190 -5 6 1508 1345 105 10 10 chr3 121028955 121029148 -38570635 + B2_Mm1t SINE B2 1 193 0 6 1508 452 329 6 45 chr3 121029176 121029332 -38570451 - ID_B1 SINE B4 -1 223 74 6 1508 495 292 71 5 chr3 121029336 121029532 -38570251 - L1MA5 LINE L1 -472 5828 5620 6 1508 1023 103 7 20 chr3 121029568 121029716 -38570067 - B1_Mur3 SINE Alu -3 146 1 6 1508 431 245 205 29 chr3 121029823 121030067 -38569716 - L1MD LINE L1 -3306 2840 2554 6 1508 1066 118 70 17 chr3 121030958 121031130 -38568653 - B2_Mm2 SINE B2 -14 181 1 6 1508 1379 60 21 16 chr3 121031595 121031781 -38568002 + B2_Mm2 SINE B2 3 189 -6 6 1508 725 76 0 0 chr3 121031943 121032035 -38567748 + B1_Mus2 SINE Alu 46 137 -10 6 1508 189 0 0 0 chr3 121032035 121032056 -38567727 + (TAA)n Simple_repeat Simple_repeat 2 22 0 6 1508 1239 27 7 7 chr3 121032276 121032423 -38567360 - B1_Mus2 SINE Alu 0 147 1 7 1508 661 253 45 28 chr3 121033646 121033825 -38565958 + B3A SINE B2 1 182 -16 7 1508 201 190 0 23 chr3 121034557 121034600 -38565183 + CT-rich Low_complexity Low_complexity 3 44 0 7 1508 280 271 66 3 chr3 121034649 121034744 -38565039 + PB1D10 SINE Alu 3 103 -46 7 1508 1626 185 42 44 chr3 121035073 121035481 -38564302 - RMER17C LTR ERVK -3 407 1 7 1508 396 0 0 0 chr3 121035484 121035528 -38564255 + (TG)n Simple_repeat Simple_repeat 1 44 0 7 1508 315 0 0 0 chr3 121035631 121035666 -38564117 + (TTA)n Simple_repeat Simple_repeat 2 36 0 7 1508 217 284 154 68 chr3 121035700 121035716 -38564067 - ID_B1 SINE B4 -97 127 1 7 1508 513 228 50 0 chr3 121035716 121035817 -38563966 - B3 SINE B2 -110 106 1 7 1508 582 187 64 16 chr3 121036817 121036942 -38562841 - B1_Mur4 SINE Alu -19 131 1 7 1508 342 0 0 0 chr3 121036950 121036988 -38562795 + (CA)n Simple_repeat Simple_repeat 2 39 0 8 1508 207 100 0 0 chr3 121037475 121037505 -38562278 + (TCC)n Simple_repeat Simple_repeat 1 30 0 8 1508 621 197 71 21 chr3 121037521 121037661 -38562122 - B1_Mur1 SINE Alu 0 149 3 8 1508 560 93 0 41 chr3 121038226 121038349 -38561434 + (TCCC)n Simple_repeat Simple_repeat 1 118 0 8 1508 1329 147 128 81 chr3 121040295 121040592 -38559191 + ORR1B2 LTR MaLR 1 311 -56 8 1508 1192 187 71 4 chr3 121040609 121040835 -38558948 + 7SK RNA RNA 1 241 -90 8 1508 323 149 0 0 chr3 121040830 121040877 -38558906 + ORR1B2 LTR MaLR 313 359 -8 8 1508 455 119 15 0 chr3 121041353 121041420 -38558363 - MTE2b LTR MaLR 0 379 312 8 1508 904 89 14 7 chr3 121041421 121041568 -38558215 + L1_Mus3 LINE L1 6491 6638 0 8 1508 339 85 0 0 chr3 121041591 121041638 -38558145 + (GA)n Simple_repeat Simple_repeat 1 47 0 8 1508 316 183 33 0 chr3 121041638 121041698 -38558085 + L1MEg LINE L1 1883 1944 -4140 8 1508 272 266 104 21 chr3 121041718 121041814 -38557969 - MTE2b LTR MaLR -70 309 206 8 1508 300 290 0 0 chr3 121043064 121043141 -38556642 - ID4 SINE ID -51 101 25 9 1508 584 296 121 0 chr3 121043230 121043429 -38556354 - MLT1A0 LTR MaLR -6 359 137 9 1508 389 319 34 17 chr3 121044364 121044482 -38555301 + RSINE1 SINE B4 44 163 -2 9 1508 321 26 0 0 chr3 121044490 121044528 -38555255 + (TGAA)n Simple_repeat Simple_repeat 3 40 0 9 1508 434 265 99 33 chr3 121044618 121044770 -38555013 + RSINE1 SINE B4 3 164 -1 9 1508 917 152 0 14 chr3 121044826 121044973 -38554810 + B1_Mus1 SINE Alu 3 147 -1 9 1508 289 136 30 0 chr3 121045080 121045146 -38554637 + CT-rich Low_complexity Low_complexity 3 70 0 9 1508 522 280 52 29 chr3 121045205 121045378 -38554405 + L3 LINE CR1 3976 4152 -337 9 1508 375 266 75 0 chr3 121045641 121045735 -38554048 - MMAR1 DNA Mariner 0 1286 1186 9 1508 851 182 0 0 chr3 121045766 121045914 -38553869 - B1_Mur1 SINE Alu 0 149 2 9 1508 566 263 82 21 chr3 121046383 121046577 -38553206 + MIR SINE MIR 16 221 -41 1 1508 186 43 0 0 chr3 121046685 121046708 -38553075 + (TC)n Simple_repeat Simple_repeat 2 24 0 1 1508 342 0 0 0 chr3 121046708 121046745 -38553038 + (TG)n Simple_repeat Simple_repeat 1 38 0 1 1508 264 122 0 0 chr3 121046853 121046894 -38552889 + (TCC)n Simple_repeat Simple_repeat 2 42 0 1 1508 525 16 0 0 chr3 121046898 121046960 -38552823 + (TC)n Simple_repeat Simple_repeat 1 62 0 1 1508 461 212 29 29 chr3 121047913 121048024 -38551759 - PB1D10 SINE Alu 0 120 2 1 1508 537 16 0 0 chr3 121048169 121048231 -38551552 + (TG)n Simple_repeat Simple_repeat 2 63 0 1 1508 243 274 15 75 chr3 121048713 121048780 -38551003 + MIRc SINE MIR 50 112 -156 1 1508 770 141 4 49 chr3 121049170 121049416 -38550367 + GA-rich Low_complexity Low_complexity 1 234 0 1 1508 777 161 321 0 chr3 121050534 121050696 -38549087 - B3 SINE B2 0 216 3 1 1508 384 269 130 45 chr3 121051450 121051643 -38548140 - B4A SINE B4 -83 209 1 1 1508 338 337 95 31 chr3 121051937 121052156 -38547627 - MIR SINE MIR -37 231 2 1 1508 22 0 0 0 chr3 121054178 121054200 -38545583 + AT_rich Low_complexity Low_complexity 1 22 0 1 1508 250 311 50 50 chr3 121054533 121054672 -38545111 + ORR1E LTR MaLR 62 200 -159 1 1508 1594 269 27 27 chr3 121055147 121055534 -38544249 + Tigger7 DNA MER2_type 6 392 -2099 1 1508 713 142 0 0 chr3 121055534 121055640 -38544143 + B2_Mm2 SINE B2 2 107 -88 1 1508 429 195 35 0 chr3 121055707 121055794 -38543989 + Tigger7 DNA MER2_type 380 469 -2022 1 1508 465 232 129 18 chr3 121055787 121055958 -38543825 + Tigger7 DNA MER2_type 2287 2476 -15 1 1508 186 133 0 0 chr3 121056416 121056446 -38543337 + (TTTTC)n Simple_repeat Simple_repeat 2 31 0 1 1508 233 62 327 77 chr3 121056486 121056538 -38543245 - B1_Mur4 SINE Alu -5 145 81 1 1508 452 239 8 84 chr3 121056541 121056660 -38543123 - B3 SINE B2 -106 110 1 1 1508 214 348 83 42 chr3 121056667 121056811 -38542972 + L2b LINE L2 3226 3375 0 1 1508 211 313 140 10 chr3 121056810 121056910 -38542873 - MIR SINE MIR -122 146 34 1 1508 22 0 0 0 chr3 121056985 121057007 -38542776 + AT_rich Low_complexity Low_complexity 1 22 0 1 1508 646 277 41 71 chr3 121057010 121057403 -38542380 - L1MA4A LINE L1 -116 6187 5807 1 1508 759 178 6 64 chr3 121058946 121059102 -38540681 - B1_Mur2 SINE Alu -1 148 2 1 1508 182 309 96 24 chr3 121059553 121059636 -38540147 - L3 LINE CR1 -2186 2303 2215 1 1508 744 317 32 43 chr3 121059945 121060222 -38539561 - MLT1K LTR MaLR -6 589 316 1 1508 463 264 79 8 chr3 121060248 121060374 -38539409 + B1F1 SINE Alu 1 135 -14 1 1508 590 0 0 14 chr3 121060374 121060445 -38539338 + (GGAA)n Simple_repeat Simple_repeat 2 71 0 1 1508 260 229 33 0 chr3 121060448 121060509 -38539274 + GA-rich Low_complexity Low_complexity 2 64 0 1 1508 215 183 0 32 chr3 121060523 121060585 -38539198 + (TTTG)n Simple_repeat Simple_repeat 3 62 0 1 1508 1092 88 0 20 chr3 121060585 121060735 -38539048 - B1_Mus1 SINE Alu 0 148 2 1 1508 345 100 0 0 chr3 121061012 121061062 -38538721 + (TTTC)n Simple_repeat Simple_repeat 3 52 0 1 1508 227 231 19 19 chr3 121061491 121061597 -38538186 + (CAGGG)n Simple_repeat Simple_repeat 4 109 0 1 1508 181 228 0 208 chr3 121061601 121061673 -38538110 - L2 LINE L2 -1368 2051 1995 1 1508 238 286 29 0 chr3 121062349 121062419 -38537364 + MER20 DNA MER1_type 97 168 -51 1 1508 198 0 0 0 chr3 121063570 121063592 -38536191 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 1 1508 852 239 72 47 chr3 121063874 121064151 -38535632 + B4A SINE B4 1 284 -8 1 1508 297 286 70 16 chr3 121064206 121064334 -38535449 - MIRc SINE MIR -131 137 3 1 1508 865 68 7 45 chr3 121064982 121065137 -38534646 - RMER17B LTR ERVK -498 460 312 1 1508 336 300 169 0 chr3 121065982 121066166 -38533617 - MIR SINE MIR -2 260 46 1 1508 410 114 0 12 chr3 121066261 121066341 -38533442 + (TTG)n Simple_repeat Simple_repeat 2 80 0 1 1508 549 273 24 89 chr3 121066689 121066858 -38532925 + RSINE1 SINE B4 3 160 -5 1 1508 343 279 28 49 chr3 121066981 121067124 -38532659 + ID_B1 SINE B4 83 222 -2 1 1508 25 0 0 0 chr3 121067187 121067212 -38532571 + AT_rich Low_complexity Low_complexity 1 25 0 1 1508 354 278 116 20 chr3 121068669 121068816 -38530967 - B4A SINE B4 -130 162 2 1 1508 270 0 0 0 chr3 121069116 121069146 -38530637 + (CA)n Simple_repeat Simple_repeat 2 31 0 1 1508 300 255 245 0 chr3 121069301 121069395 -38530388 + PB1D10 SINE Alu 1 117 0 1 1508 258 32 0 0 chr3 121069476 121069507 -38530276 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1 1508 266 299 84 63 chr3 121069550 121069693 -38530090 - L2c LINE L2 -131 3256 3111 1 1508 378 48 0 48 chr3 121069709 121069772 -38530011 - MT2B LTR ERVL 0 601 535 1 1508 210 143 0 0 chr3 121069785 121069820 -38529963 + (TA)n Simple_repeat Simple_repeat 2 36 0 1 1508 1688 148 62 70 chr3 121069820 121070278 -38529505 - MT2B LTR ERVL -63 538 1 1 1508 354 138 0 0 chr3 121070816 121070874 -38528909 + (GGA)n Simple_repeat Simple_repeat 3 60 0 1 1508 1115 94 123 0 chr3 121070896 121070923 -38528860 + B2_Mm1t SINE B2 2 28 -165 1 1508 1069 111 0 0 chr3 121070923 121071067 -38528716 + B1_Mus1 SINE Alu 5 148 0 1 1508 1115 94 123 0 chr3 121071067 121071210 -38528573 + B2_Mm1t SINE B2 29 191 -2 1 1508 255 297 87 19 chr3 121071230 121071333 -38528450 - Charlie1 DNA MER1_type -2671 110 1 1 1508 448 289 105 117 chr3 121071399 121071458 -38528325 - MLT1E3 LTR MaLR -11 613 556 1 1508 1598 157 129 6 chr3 121071458 121071791 -38527992 - ORR1D1 LTR MaLR 0 374 1 1 1508 448 289 105 117 chr3 121071791 121071836 -38527947 - MLT1E3 LTR MaLR -69 555 521 1 1508 886 88 13 127 chr3 121071836 121071993 -38527790 - B1_Mus1 SINE Alu -9 139 1 1 1508 448 289 105 117 chr3 121071993 121072126 -38527657 - MLT1E3 LTR MaLR -104 520 378 1 1508 1010 223 55 105 chr3 121072522 121072883 -38526900 + ORR1D2 LTR MaLR 6 348 -22 1 1508 230 271 0 54 chr3 121072880 121072954 -38526829 - LTRIS4 LTR ERV1 -413 94 25 1 1508 1184 43 0 0 chr3 121072955 121073094 -38526689 - B1_Mus1 SINE Alu -9 139 1 1 1508 894 228 38 52 chr3 121073173 121073386 -38526397 - B3 SINE B2 0 216 7 1 1508 685 306 103 30 chr3 121074757 121075124 -38524659 - MLT1G LTR MaLR -4 587 194 1 1508 836 146 27 27 chr3 121075229 121075377 -38524406 + B1_Mur2 SINE Alu 2 149 0 1 1508 381 229 207 3 chr3 121075507 121075763 -38524020 - L1MB7 LINE L1 -19 6165 5851 1 1508 216 102 40 20 chr3 121075776 121075826 -38523957 + (TG)n Simple_repeat Simple_repeat 1 51 0 1 1508 909 302 12 28 chr3 121075881 121076133 -38523650 - B4A SINE B4 -44 248 1 1 1508 483 251 37 70 chr3 121076133 121076347 -38523436 - L1MB7 LINE L1 -355 5829 5623 1 1508 442 269 184 49 chr3 121076367 121076590 -38523193 + B4A SINE B4 2 254 -38 1 1508 240 35 0 0 chr3 121076669 121076698 -38523085 + (CA)n Simple_repeat Simple_repeat 1 29 0 1 1508 673 144 203 0 chr3 121077293 121077333 -38522450 + B1_Mus1 SINE Alu 1 64 -84 1 1508 270 0 0 0 chr3 121077333 121077363 -38522420 + (TA)n Simple_repeat Simple_repeat 2 31 0 1 1508 673 144 203 0 chr3 121077363 121077440 -38522343 + B1_Mus1 SINE Alu 65 141 -7 1 1508 1243 55 0 0 chr3 121077448 121077594 -38522189 + B1_Mus1 SINE Alu 2 147 -1 1 1508 716 139 0 15 chr3 121077624 121077755 -38522028 + GA-rich Low_complexity Low_complexity 3 131 0 1 1508 263 293 27 0 chr3 121077850 121077925 -38521858 - MIR SINE MIR -8 254 178 1 1508 692 275 7 0 chr3 121078328 121078466 -38521317 - ID_B1 SINE B4 -2 222 84 1 1508 201 368 40 0 chr3 121078554 121078630 -38521153 - MIRc SINE MIR -150 118 40 1 1508 987 280 13 0 chr3 121079606 121079831 -38519952 + B4A SINE B4 2 229 -63 1 1508 525 226 97 0 chr3 121079832 121079956 -38519827 + B1_Mur1 SINE Alu 2 137 -12 1 1508 351 0 0 0 chr3 121080074 121080113 -38519670 + (TC)n Simple_repeat Simple_repeat 1 39 0 1 1508 473 58 14 0 chr3 121080113 121080181 -38519602 + (CA)n Simple_repeat Simple_repeat 1 70 0 1 1508 299 277 128 0 chr3 121080189 121080283 -38519500 + PB1D10 SINE Alu 5 110 -7 1 1508 834 153 0 0 chr3 121080283 121080427 -38519356 + GA-rich Low_complexity Low_complexity 1 144 0 1 1508 312 330 52 9 chr3 121080523 121080639 -38519144 + PB1 SINE Alu 5 125 -2 1 1508 756 193 67 0 chr3 121080645 121080780 -38519003 + B1_Mur4 SINE Alu 7 150 0 1 1508 1255 130 0 5 chr3 121080846 121081031 -38518752 - B2_Mm2 SINE B2 -11 184 1 1 1508 367 299 97 0 chr3 121081075 121081209 -38518574 + B3A SINE B2 15 161 -37 1 1508 303 122 0 0 chr3 121081221 121081270 -38518513 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 1508 309 279 189 19 chr3 121081295 121081401 -38518382 + PB1 SINE Alu 1 124 -3 1 1508 284 282 13 0 chr3 121081410 121081488 -38518295 + ID4_ SINE ID 2 80 -3 1 1508 31 26 0 0 chr3 121081488 121081526 -38518257 + AT_rich Low_complexity Low_complexity 1 38 0 1 1508 208 341 83 68 chr3 121081570 121081702 -38518081 + MIRm SINE MIR 13 146 -130 1 1508 228 319 0 0 chr3 121081937 121082006 -38517777 - ID4_ SINE ID -13 70 2 1 1508 401 258 171 5 chr3 121082061 121082248 -38517535 - ID_B1 SINE B4 -2 222 5 1 1508 232 244 244 0 chr3 121082280 121082366 -38517417 - B1F SINE Alu -41 108 2 1 1508 4777 51 8 13 chr3 121083902 121084522 -38515261 - L1_Mus3 LINE L1 -3 6635 6019 1 1508 264 59 0 0 chr3 121084599 121084633 -38515150 + (TCTCCC)n Simple_repeat Simple_repeat 4 37 0 1 1508 1524 268 89 36 chr3 121085067 121085556 -38514227 + Lx9 LINE L1 7002 7516 -128 1 1508 441 0 0 0 chr3 121085556 121085605 -38514178 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 1508 1524 268 89 36 chr3 121085605 121085724 -38514059 + Lx9 LINE L1 7517 7642 -2 1 1508 477 0 0 0 chr3 121086751 121086804 -38512979 + (TC)n Simple_repeat Simple_repeat 2 54 0 1 1508 446 170 295 0 chr3 121086808 121086920 -38512863 - B1_Mur4 SINE Alu 0 150 6 1 1508 1338 73 0 0 chr3 121086922 121087101 -38512682 + (CCA)n Simple_repeat Simple_repeat 1 179 0 2 1508 822 180 45 85 chr3 121087540 121087740 -38512043 + B3A SINE B2 1 192 -6 2 1508 256 200 14 14 chr3 121087772 121087843 -38511940 + CT-rich Low_complexity Low_complexity 2 72 0 2 1508 420 118 0 0 chr3 121088558 121088626 -38511157 + (TG)n Simple_repeat Simple_repeat 1 68 0 2 1508 503 277 80 114 chr3 121088630 121088919 -38510864 - B4A SINE B4 -8 284 6 2 1508 282 85 51 0 chr3 121088930 121088989 -38510794 + (TA)n Simple_repeat Simple_repeat 1 62 0 2 1508 696 197 0 64 chr3 121088998 121089155 -38510628 + B1_Mur3 SINE Alu 2 148 -1 2 1508 634 203 157 16 chr3 121089179 121089364 -38510419 - B3 SINE B2 -5 211 1 2 1508 922 149 157 10 chr3 121089415 121089612 -38510171 - URR1A DNA MER1_type 0 226 1 2 1508 192 77 0 0 chr3 121089704 121089730 -38510053 + (TTTTG)n Simple_repeat Simple_repeat 3 28 0 2 1508 492 295 113 27 chr3 121089790 121089940 -38509843 - RSINE1 SINE B4 0 165 3 2 1508 2511 157 29 29 chr3 121090177 121090630 -38509153 - RLTR11B LTR ERVK 0 453 1 2 1508 220 364 36 17 chr3 121090765 121090886 -38508897 - MIRb SINE MIR -88 180 54 2 1508 343 282 22 124 chr3 121090904 121091082 -38508701 + B4 SINE B4 109 268 -24 2 1508 433 294 171 19 chr3 121091424 121091629 -38508154 + MIR SINE MIR 13 248 -14 2 1508 378 0 0 0 chr3 121092764 121092806 -38506977 + (TG)n Simple_repeat Simple_repeat 2 43 0 2 1508 219 232 18 0 chr3 121093814 121093870 -38505913 + G-rich Low_complexity Low_complexity 3 59 0 2 1508 818 133 38 134 chr3 121094170 121094266 -38505517 - Lx2 LINE L1 0 6997 6908 2 1508 824 103 233 25 chr3 121094266 121094425 -38505358 - B2_Mm1t SINE B2 -1 192 1 2 1508 818 133 38 134 chr3 121094425 121094537 -38505246 - Lx2 LINE L1 -90 6907 6809 2 1508 395 331 29 23 chr3 121094576 121094708 -38505075 + B1F1 SINE Alu 2 133 -16 2 1508 374 181 83 0 chr3 121094893 121094965 -38504818 - B3 SINE B2 -137 79 2 2 1508 3256 48 2 12 chr3 121095070 121095474 -38504309 + MTB LTR MaLR 1 400 0 2 1508 261 225 153 37 chr3 121095550 121095649 -38504134 + MLT1A0 LTR MaLR 217 353 -55 2 1508 305 286 100 0 chr3 121095647 121095717 -38504066 - ID4_ SINE ID 0 83 7 2 1508 350 262 26 53 chr3 121095734 121095847 -38503936 - PB1D10 SINE Alu -7 110 1 2 1508 1152 68 7 0 chr3 121096066 121096212 -38503571 - B1_Mus2 SINE Alu 0 147 1 2 1508 1390 79 11 0 chr3 121096212 121096400 -38503383 - B2_Mm1t SINE B2 0 193 3 2 1508 224 59 29 0 chr3 121096890 121096924 -38502859 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 2 1508 189 0 0 0 chr3 121096935 121096956 -38502827 + (TTG)n Simple_repeat Simple_repeat 2 22 0 2 1508 669 115 52 26 chr3 121096956 121097062 -38502721 - B1_Mur4 SINE Alu -10 140 30 2 1508 396 0 0 0 chr3 121097284 121097328 -38502455 + (TG)n Simple_repeat Simple_repeat 2 45 0 2 1508 224 264 5 0 chr3 121097481 121097546 -38502237 + B1F1 SINE Alu 59 124 -23 2 1508 510 250 0 23 chr3 121097547 121097723 -38502060 + GA-rich Low_complexity Low_complexity 1 172 0 2 1508 364 311 9 28 chr3 121098181 121098287 -38501496 + MLT1H LTR MaLR 59 162 -387 2 1508 825 270 15 20 chr3 121098287 121098487 -38501296 + ID_B1 SINE B4 3 201 -23 2 1508 245 360 45 65 chr3 121098509 121098800 -38500983 + MLT1H LTR MaLR 153 437 -112 2 1508 353 147 160 0 chr3 121098939 121099014 -38500769 + B1F SINE Alu 53 139 -10 2 1508 181 333 46 9 chr3 121099231 121099340 -38500443 - L2 LINE L2 -1127 2292 2180 2 1508 1146 29 0 0 chr3 121099442 121099581 -38500202 - RLTR10B2 LTR ERVK 0 365 227 2 1508 240 143 0 0 chr3 121100134 121100176 -38499607 + (TG)n Simple_repeat Simple_repeat 2 43 0 2 1508 230 299 125 45 chr3 121100373 121100485 -38499298 - MER63B DNA AcHobo 0 436 316 2 1508 560 306 32 19 chr3 121100525 121100714 -38499069 + B4A SINE B4 2 198 -94 2 1508 375 60 0 0 chr3 121100719 121100769 -38499014 + (TG)n Simple_repeat Simple_repeat 2 51 0 2 1508 794 254 30 6 chr3 121100806 121100972 -38498811 + B3A SINE B2 5 174 -24 2 1508 316 242 5 5 chr3 121100991 121101070 -38498713 + B1_Mur4 SINE Alu 1 79 -69 2 1508 493 132 13 0 chr3 121101131 121101207 -38498576 + B1_Mur4 SINE Alu 68 144 -6 2 1508 752 153 7 0 chr3 121101224 121101361 -38498422 + GA-rich Low_complexity Low_complexity 1 138 0 2 1508 309 297 14 0 chr3 121101368 121101442 -38498341 + B3A SINE B2 46 120 -78 2 1508 1553 115 4 22 chr3 121101446 121101677 -38498106 + MTC LTR MaLR 1 227 -194 2 1508 735 230 102 46 chr3 121101847 121102043 -38497740 + ID_B1 SINE B4 2 208 -16 2 1508 222 37 0 0 chr3 121102082 121102109 -38497674 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 2 1508 1431 48 0 0 chr3 121102117 121102327 -38497456 + (TTCC)n Simple_repeat Simple_repeat 1 210 0 2 1508 783 247 31 21 chr3 121102339 121102533 -38497250 - B3 SINE B2 -3 213 18 2 1508 211 189 38 0 chr3 121103023 121103076 -38496707 + (TCTG)n Simple_repeat Simple_repeat 4 58 0 2 1508 375 343 37 65 chr3 121103150 121103365 -38496418 - B4A SINE B4 -83 209 1 2 1508 288 0 0 0 chr3 121103372 121103404 -38496379 + (TTTG)n Simple_repeat Simple_repeat 4 35 0 2 1508 521 224 9 53 chr3 121103406 121103519 -38496264 - PB1D9 SINE Alu -11 109 2 2 1508 914 161 200 6 chr3 121103714 121103889 -38495894 + B3 SINE B2 2 210 -6 2 1508 742 230 166 69 chr3 121103926 121104008 -38495775 - MER47A DNA MER2_type -1 365 279 2 1508 1000 238 134 55 chr3 121104008 121104351 -38495432 + ORR1D2 LTR MaLR 1 370 0 2 1508 742 230 166 69 chr3 121104351 121104600 -38495183 - MER47A DNA MER2_type -88 278 2 2 1508 311 262 176 9 chr3 121104630 121104738 -38495045 + MER5A1 DNA MER1_type 41 166 0 2 1508 3082 145 39 35 chr3 121105391 121105934 -38493849 - Lx4A LINE L1 0 7058 6514 2 1508 483 75 76 105 chr3 121105939 121106044 -38493739 - L1_Mur2 LINE L1 -6446 266 165 2 1508 875 324 57 59 chr3 121106117 121106589 -38493194 + MLT2B3 LTR ERVL 18 488 -66 2 1508 855 225 74 10 chr3 121106861 121107063 -38492720 - B3 SINE B2 -1 215 1 2 1508 674 178 115 8 chr3 121107091 121107221 -38492562 - B1_Mur2 SINE Alu -2 147 4 2 1508 1218 61 0 0 chr3 121107303 121107450 -38492333 + B1_Mus1 SINE Alu 2 148 0 2 1508 1042 151 95 41 chr3 121107538 121107759 -38492024 + Lx5 LINE L1 6818 7050 0 2 1508 23 0 0 0 chr3 121107765 121107788 -38491995 + AT_rich Low_complexity Low_complexity 1 23 0 2 1508 212 222 0 22 chr3 121107788 121107834 -38491949 + L2a LINE L2 3373 3417 -9 2 1508 1185 289 89 32 chr3 121107998 121108502 -38491281 + MER68 LTR ERVL 3 535 -28 2 1508 1544 58 0 5 chr3 121108604 121108793 -38490990 + B2_Mm2 SINE B2 1 188 -7 2 1508 1128 89 0 0 chr3 121108810 121108990 -38490793 + (TG)n Simple_repeat Simple_repeat 1 180 0 2 1508 264 258 0 25 chr3 121108998 121109069 -38490714 - B4 SINE B4 -208 84 22 2 1508 302 295 0 0 chr3 121109021 121109082 -38490701 - ID4_ SINE ID -15 68 8 2 1508 1008 81 73 0 chr3 121109083 121109219 -38490564 + B1_Mus1 SINE Alu 3 148 0 2 1508 351 150 0 0 chr3 121109221 121109281 -38490502 + (A)n Simple_repeat Simple_repeat 1 60 0 2 1508 367 252 202 0 chr3 121109536 121109655 -38490128 - B1_Mur1 SINE Alu -6 143 1 2 1508 239 254 44 15 chr3 121109714 121109782 -38490001 - ID4 SINE ID -13 70 1 2 1509 379 318 112 43 chr3 121111377 121111610 -38488173 + MLT1J LTR MaLR 227 475 -37 2 1509 325 317 35 32 chr3 121111626 121111784 -38487999 + B4 SINE B4 5 164 -1 2 1509 468 51 0 0 chr3 121112091 121112150 -38487633 + (TCTA)n Simple_repeat Simple_repeat 2 60 0 2 1509 351 289 33 0 chr3 121112618 121112708 -38487075 - MLT1A0 LTR MaLR -250 115 23 2 1509 1143 261 72 67 chr3 121112713 121113115 -38486668 - MLT1A0-int LTR MaLR -17 1718 1315 2 1509 777 160 0 0 chr3 121113248 121113392 -38486391 + CT-rich Low_complexity Low_complexity 1 144 0 2 1509 594 285 14 14 chr3 121113427 121113566 -38486217 - B1F2 SINE Alu -7 142 4 2 1509 368 154 77 0 chr3 121113566 121113631 -38486152 - PB1D10 SINE Alu -8 109 40 2 1509 1250 307 103 41 chr3 121113718 121114347 -38485436 - MLT1A0-int LTR MaLR -1067 668 1 2 1509 654 266 50 37 chr3 121114460 121114760 -38485023 + L1MA4 LINE L1 5624 5927 -373 2 1509 226 354 114 30 chr3 121115000 121115166 -38484617 + RMER4A LTR ERVK 8 187 -279 2 1509 363 258 11 11 chr3 121115373 121115467 -38484316 - MLT1A0 LTR MaLR -206 159 66 2 1509 1100 57 13 3 chr3 121115815 121115964 -38483819 + B1_Mus1 SINE Alu 4 148 0 2 1509 495 161 0 0 chr3 121116021 121116139 -38483644 + CT-rich Low_complexity Low_complexity 1 118 0 2 1509 276 77 0 0 chr3 121116139 121116178 -38483605 + (TG)n Simple_repeat Simple_repeat 2 40 0 2 1509 217 333 14 0 chr3 121116180 121116249 -38483534 - RSINE1 SINE B4 -93 72 3 2 1509 1503 69 5 0 chr3 121116318 121116506 -38483277 - B2_Mm1a SINE B2 -3 190 2 2 1509 277 180 0 0 chr3 121116575 121116625 -38483158 - B2_Mm2 SINE B2 -98 97 48 2 1509 1127 115 34 17 chr3 121116670 121116847 -38482936 - B2_Mm1t SINE B2 -12 181 2 2 1509 1204 112 16 38 chr3 121116847 121117033 -38482750 - B2_Mm2 SINE B2 -13 182 1 2 1509 2328 98 35 3 chr3 121117173 121117490 -38482293 - ORR1A2 LTR MaLR 0 327 1 2 1509 580 164 267 0 chr3 121117514 121117630 -38482153 + B1_Mm SINE Alu 1 147 0 2 1509 1995 136 77 34 chr3 121117647 121117998 -38481785 - ORR1B2 LTR MaLR 0 367 2 2 1509 185 228 190 0 chr3 121118037 121118116 -38481667 - L2c LINE L2 -225 3162 3069 2 1509 415 300 45 0 chr3 121118237 121118347 -38481436 + PB1D10 SINE Alu 2 116 -1 3 1509 504 254 231 11 chr3 121118484 121118657 -38481126 + ID_B1 SINE B4 12 222 -2 3 1509 1084 84 14 0 chr3 121118702 121118845 -38480938 + B1_Mus1 SINE Alu 1 145 -3 3 1509 240 35 0 0 chr3 121118845 121118874 -38480909 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 3 1509 669 58 0 0 chr3 121118897 121118983 -38480800 + (TTTC)n Simple_repeat Simple_repeat 2 87 0 3 1509 1116 85 13 0 chr3 121118983 121119136 -38480647 - B2_Mm1t SINE B2 -12 181 27 3 1509 438 270 0 20 chr3 121119137 121119239 -38480544 + L2b LINE L2 3276 3375 0 3 1509 21 0 0 0 chr3 121119442 121119463 -38480320 + AT_rich Low_complexity Low_complexity 1 21 0 3 1509 256 273 0 15 chr3 121119511 121119578 -38480205 - MTEa LTR MaLR -26 353 288 3 1509 405 70 0 0 chr3 121119952 121120009 -38479774 + (TTTTC)n Simple_repeat Simple_repeat 2 58 0 3 1509 1111 87 0 0 chr3 121120022 121120160 -38479623 - B1_Mus2 SINE Alu -9 138 1 3 1509 249 163 0 0 chr3 121120290 121120339 -38479444 + CT-rich Low_complexity Low_complexity 2 50 0 3 1509 496 216 66 38 chr3 121120350 121120456 -38479327 - PB1 SINE Alu -14 113 5 3 1509 444 274 223 63 chr3 121120501 121120801 -38478982 - MLT1A0 LTR MaLR -17 348 1 3 1509 183 42 0 0 chr3 121120861 121120885 -38478898 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 3 1509 370 340 21 21 chr3 121121374 121121518 -38478265 - B1F SINE Alu -5 144 1 3 1509 330 163 147 39 chr3 121121638 121121740 -38478043 - L1M4b LINE L1 -5055 2279 2167 3 1509 1022 106 28 17 chr3 121121758 121121913 -38477870 + B1_Mm SINE Alu 13 311 0 3 1509 660 293 34 5 chr3 121121921 121122130 -38477653 + ID_B1 SINE B4 3 217 -7 3 1509 545 254 16 23 chr3 121122522 121122692 -38477091 - B4 SINE B4 -113 179 5 3 1509 1218 61 0 0 chr3 121122946 121123093 -38476690 - B1_Mus1 SINE Alu 0 148 2 3 1509 3672 154 28 14 chr3 121123093 121123555 -38476228 + Lx5 LINE L1 6459 6918 -132 3 1509 4361 15 2 0 chr3 121123555 121124036 -38475747 - LTRIS_Mm LTR ERV1 0 482 1 3 1509 3672 154 28 14 chr3 121124036 121124152 -38475631 + Lx5 LINE L1 6919 7045 -5 3 1509 619 294 115 35 chr3 121124292 121124553 -38475230 - B4 SINE B4 -9 283 2 3 1509 580 189 0 10 chr3 121124817 121124925 -38474858 + B1F SINE Alu 2 108 -12 3 1509 360 0 0 0 chr3 121124931 121124971 -38474812 + (CTAA)n Simple_repeat Simple_repeat 2 41 0 3 1509 473 297 72 79 chr3 121124981 121125067 -38474716 + B1_Mur1 SINE Alu 3 93 -56 3 1509 1088 98 224 0 chr3 121125067 121125250 -38474533 - URR1A DNA MER1_type -2 224 1 3 1509 473 297 72 79 chr3 121125250 121125302 -38474481 + B1_Mur1 SINE Alu 94 140 -9 3 1509 235 176 97 21 chr3 121125333 121125426 -38474357 + L1MD LINE L1 5355 5454 -2541 3 1509 246 246 0 66 chr3 121125494 121125555 -38474228 - RSINE1 SINE B4 -104 61 5 3 1509 608 90 186 20 chr3 121125572 121125674 -38474109 + PB1D9 SINE Alu 2 120 0 3 1509 702 73 471 0 chr3 121125689 121125812 -38473971 - B2_Mm2 SINE B2 -14 181 1 3 1509 298 252 25 0 chr3 121125826 121125934 -38473849 + L1M5 LINE L1 5587 5697 -467 3 1509 315 308 13 0 chr3 121125971 121126049 -38473734 + Tigger5 DNA MER2_type 28 106 -2300 3 1509 597 241 15 0 chr3 121126099 121126232 -38473551 - B1_Mur2 SINE Alu -13 136 2 3 1509 310 344 31 23 chr3 121126232 121126352 -38473431 + Tigger5 DNA MER2_type 92 215 -2191 3 1509 683 220 35 14 chr3 121126355 121126498 -38473285 + B1F SINE Alu 4 149 0 3 1509 493 263 25 0 chr3 121126552 121126670 -38473113 + Tigger5 DNA MER2_type 2282 2402 -4 3 1509 576 221 60 22 chr3 121126870 121127004 -38472779 - RSINE1 SINE B4 -24 141 3 3 1509 476 248 77 0 chr3 121127203 121127320 -38472463 - RSINE1 SINE B4 -37 128 3 3 1509 332 278 0 58 chr3 121127363 121127466 -38472317 - PB1D9 SINE Alu -52 97 1 3 1509 257 323 40 0 chr3 121127842 121127941 -38471842 + MamSINE1 SINE tRNA 181 283 -7 3 1509 25 75 0 0 chr3 121129264 121129317 -38470466 + GC_rich Low_complexity Low_complexity 1 53 0 3 1509 25 0 0 0 chr3 121129887 121129912 -38469871 + GC_rich Low_complexity Low_complexity 1 25 0 3 1509 1169 55 0 7 chr3 121131517 121131664 -38468119 - B1_Mm SINE Alu 0 147 2 3 1509 661 227 39 112 chr3 121132241 121132474 -38467309 - B3 SINE B2 0 216 1 3 1509 190 271 79 45 chr3 121132501 121132590 -38467193 - L2 LINE L2 -3253 166 75 3 1509 511 266 56 44 chr3 121133013 121133168 -38466615 - ID_B1 SINE B4 -53 239 84 3 1509 1288 120 5 0 chr3 121133175 121133367 -38466416 - B2_Mm1t SINE B2 0 193 1 3 1509 590 196 0 10 chr3 121134102 121134205 -38465578 + PB1D9 SINE Alu 18 119 -1 3 1509 1551 57 0 10 chr3 121134479 121134673 -38465110 + B2_Mm2 SINE B2 2 193 -2 3 1509 866 132 15 0 chr3 121134699 121134835 -38464948 + B1_Mur3 SINE Alu 11 148 -1 3 1509 595 182 75 62 chr3 121135039 121135185 -38464598 - B1_Mur1 SINE Alu 0 149 2 3 1509 1421 54 36 42 chr3 121135542 121135735 -38464048 - B2_Mm2 SINE B2 -2 193 2 3 1509 378 0 0 0 chr3 121135871 121135913 -38463870 + (TG)n Simple_repeat Simple_repeat 2 43 0 3 1509 252 0 0 0 chr3 121135914 121135942 -38463841 + (CCTG)n Simple_repeat Simple_repeat 3 30 0 3 1509 21 57 0 0 chr3 121136381 121136416 -38463367 + AT_rich Low_complexity Low_complexity 1 35 0 3 1509 184 246 98 0 chr3 121136474 121136535 -38463248 + MIR SINE MIR 34 100 -162 3 1509 995 241 10 19 chr3 121137304 121137511 -38462272 + ID_B1 SINE B4 13 217 -7 3 1509 773 264 67 117 chr3 121137513 121137813 -38461970 + B4 SINE B4 1 285 -7 3 1509 226 301 10 41 chr3 121138392 121138489 -38461294 - PB1 SINE Alu -17 110 17 3 1509 474 299 0 9 chr3 121139004 121139112 -38460671 + ID_B1 SINE B4 112 218 -6 3 1509 228 234 64 0 chr3 121139070 121139117 -38460666 + PB1D7 SINE Alu 70 119 -1 3 1509 587 238 183 69 chr3 121139136 121139398 -38460385 + B4A SINE B4 1 292 0 3 1509 683 257 82 26 chr3 121139744 121139956 -38459827 + MER2 DNA MER2_type 2 226 -119 3 1509 276 312 0 36 chr3 121139956 121140039 -38459744 + ID SINE ID 1 80 -144 3 1509 362 294 20 111 chr3 121140038 121140191 -38459592 + MER2 DNA MER2_type 207 345 0 3 1509 287 138 0 33 chr3 121140478 121140538 -38459245 + GA-rich Low_complexity Low_complexity 2 59 0 3 1509 221 0 0 33 chr3 121140916 121140946 -38458837 + (GCCTG)n Simple_repeat Simple_repeat 4 32 0 3 1509 230 250 32 40 chr3 121141502 121141517 -38458266 + ORR1B1-int LTR MaLR 631 644 -865 3 1509 728 132 8 34 chr3 121141517 121141635 -38458148 + B1_Mm SINE Alu 1 115 -32 3 1509 3630 91 22 4 chr3 121141910 121142408 -38457375 - Lx3C LINE L1 -8 6968 6462 3 1509 333 0 0 0 chr3 121142499 121142536 -38457247 + (CA)n Simple_repeat Simple_repeat 1 37 0 3 1509 303 256 76 22 chr3 121143787 121143879 -38455904 - B1F2 SINE Alu -50 97 1 3 1509 923 85 21 14 chr3 121144018 121144161 -38455622 + URR1A DNA MER1_type 83 226 0 3 1509 543 154 50 71 chr3 121144038 121144178 -38455605 - CYRA11_Mm Unknown Y-chromosome -322 295 159 3 1509 226 232 37 92 chr3 121145299 121145408 -38454375 + ORR1D1 LTR MaLR 31 133 -241 3 1509 259 44 44 0 chr3 121145892 121145937 -38453846 + (TTG)n Simple_repeat Simple_repeat 2 48 0 3 1509 1292 188 90 32 chr3 121145937 121146256 -38453527 - ORR1C2 LTR MaLR -10 374 1 3 1509 489 290 117 64 chr3 121146452 121146750 -38453033 + MER2 DNA MER2_type 15 328 -17 3 1509 877 172 0 20 chr3 121147803 121147815 -38451968 - B1_Mur3 SINE Alu -1 148 138 3 1509 260 72 0 45 chr3 121147815 121147859 -38451924 + (TTCTG)n Simple_repeat Simple_repeat 4 45 0 3 1509 877 172 0 20 chr3 121147859 121147994 -38451789 - B1_Mur3 SINE Alu -12 137 4 3 1509 381 117 0 0 chr3 121147997 121148057 -38451726 + (TCCC)n Simple_repeat Simple_repeat 2 61 0 3 1509 786 126 23 23 chr3 121148087 121148217 -38451566 - B3 SINE B2 -86 130 1 3 1509 279 326 35 7 chr3 121148338 121148480 -38451303 - L1M2 LINE L1 -765 5535 5390 3 1509 310 277 27 98 chr3 121148490 121148611 -38451172 - L1MD LINE L1 -800 5346 5235 3 1509 317 296 93 0 chr3 121148611 121148719 -38451064 - PB1D9 SINE Alu -1 119 2 3 1509 310 272 104 89 chr3 121148719 121148822 -38450961 - L1MD LINE L1 -912 5234 5121 3 1509 350 296 120 0 chr3 121148998 121149140 -38450643 - Lx8 LINE L1 -125 7348 7190 3 1509 466 273 161 7 chr3 121149286 121149429 -38450354 - Lx8 LINE L1 -560 6913 6733 3 1509 189 0 0 0 chr3 121149429 121149450 -38450333 + (G)n Simple_repeat Simple_repeat 1 21 0 3 1509 466 289 271 26 chr3 121149450 121149786 -38449997 - Lx8 LINE L1 -728 6745 6330 3 1509 276 30 0 0 chr3 121149786 121149819 -38449964 + (TG)n Simple_repeat Simple_repeat 1 33 0 3 1509 408 309 124 47 chr3 121149819 121149931 -38449852 - Lx8 LINE L1 -1144 6329 6198 3 1509 198 0 0 0 chr3 121150241 121150263 -38449520 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 3 1509 250 179 89 0 chr3 121150271 121150327 -38449456 - B3 SINE B2 -3 213 153 3 1509 378 0 0 0 chr3 121150331 121150373 -38449410 + (TTTTG)n Simple_repeat Simple_repeat 2 43 0 3 1509 1220 43 0 0 chr3 121150376 121150516 -38449267 - B1_Mus2 SINE Alu -7 140 1 3 1509 1351 91 11 5 chr3 121150517 121150705 -38449078 - B2_Mm2 SINE B2 -6 189 1 3 1509 648 112 31 0 chr3 121151918 121152016 -38447767 - B1_Mur4 SINE Alu -32 118 18 3 1509 360 239 71 27 chr3 121152016 121152030 -38447753 - ID_B1 SINE B4 -29 195 79 3 1509 1153 61 0 7 chr3 121152065 121152213 -38447570 + B1_Mus1 SINE Alu 2 148 0 3 1509 840 153 6 28 chr3 121153338 121153519 -38446264 + CT-rich Low_complexity Low_complexity 2 178 0 3 1509 307 315 30 61 chr3 121153555 121153687 -38446096 - ID_B1 SINE B4 -1 223 96 3 1509 228 111 0 0 chr3 121153758 121153794 -38445989 + (CG)n Simple_repeat Simple_repeat 2 37 0 3 1509 189 0 0 0 chr3 121153794 121153814 -38445969 + (CA)n Simple_repeat Simple_repeat 1 21 0 3 1509 759 264 5 66 chr3 121153893 121154104 -38445679 + ID_B1 SINE B4 25 222 -2 3 1509 25 0 0 0 chr3 121154935 121154960 -38444823 + AT_rich Low_complexity Low_complexity 1 25 0 4 1509 566 214 13 76 chr3 121155085 121155103 -38444680 + ID_B1 SINE B4 78 224 0 4 1509 708 169 7 22 chr3 121155103 121155242 -38444541 + B1F SINE Alu 13 149 0 4 1509 399 260 86 9 chr3 121156051 121156156 -38443627 + ID_B1 SINE B4 106 218 -6 4 1509 328 300 73 32 chr3 121156984 121157108 -38442675 - RMER30 DNA MER1_type -9 193 65 4 1509 882 19 9 0 chr3 121157297 121157405 -38442378 - B1_Mus2 SINE Alu 0 147 39 4 1509 900 234 251 0 chr3 121158473 121158772 -38441011 - MTD LTR MaLR -45 374 1 4 1509 350 287 97 19 chr3 121158824 121158927 -38440856 + RSINE1 SINE B4 24 134 -31 4 1509 636 235 116 11 chr3 121159457 121159646 -38440137 - B3 SINE B2 -6 210 2 4 1509 28 0 0 0 chr3 121161082 121161110 -38438673 + AT_rich Low_complexity Low_complexity 1 28 0 4 1509 395 229 48 0 chr3 121161278 121161361 -38438422 + PB1D7 SINE Alu 34 120 0 4 1509 29 0 0 0 chr3 121162075 121162104 -38437679 + AT_rich Low_complexity Low_complexity 1 29 0 4 1509 192 77 0 0 chr3 121162403 121162429 -38437354 + (A)n Simple_repeat Simple_repeat 1 26 0 4 1509 564 246 51 0 chr3 121162491 121162629 -38437154 - RSINE1 SINE B4 -6 159 15 4 1509 266 248 206 40 chr3 121162639 121162765 -38437018 - B1F1 SINE Alu -1 148 2 4 1509 221 188 0 40 chr3 121164378 121164428 -38435355 + GA-rich Low_complexity Low_complexity 1 48 0 4 1509 339 25 0 0 chr3 121164523 121164563 -38435220 + (CGTG)n Simple_repeat Simple_repeat 3 42 0 4 1509 667 283 85 15 chr3 121164576 121164732 -38435051 - B4A SINE B4 -2 290 134 4 1509 333 0 0 0 chr3 121164732 121164769 -38435014 + (CA)n Simple_repeat Simple_repeat 2 38 0 4 1509 667 283 85 15 chr3 121164769 121164813 -38434970 - B4A SINE B4 -159 133 78 4 1509 1033 98 28 7 chr3 121164909 121165053 -38434730 - B1_Mus1 SINE Alu 0 148 2 4 1509 1135 78 0 0 chr3 121165486 121165627 -38434156 + B1_Mus1 SINE Alu 2 142 -6 4 1509 223 294 0 45 chr3 121166017 121166106 -38433677 + L3 LINE CR1 4073 4157 -332 4 1509 198 0 0 0 chr3 121167236 121167258 -38432525 + (A)n Simple_repeat Simple_repeat 1 22 0 4 1509 396 0 0 0 chr3 121167562 121167606 -38432177 + (TG)n Simple_repeat Simple_repeat 2 45 0 4 1509 288 234 174 72 chr3 121167971 121168178 -38431605 + MIR SINE MIR 8 235 -27 4 1509 396 243 87 0 chr3 121169234 121169337 -38430446 - ID_B1 SINE B4 -11 213 102 4 1509 531 230 65 29 chr3 121169519 121169545 -38430238 + B4 SINE B4 61 91 -201 4 1509 1054 31 0 0 chr3 121169545 121169672 -38430111 + B1_Mus1 SINE Alu 2 128 -20 4 1509 285 71 86 0 chr3 121169672 121169742 -38430041 + (TA)n Simple_repeat Simple_repeat 2 77 0 4 1509 1098 142 88 51 chr3 121169750 121169965 -38429818 + URR1A DNA MER1_type 1 223 -3 4 1509 346 258 44 15 chr3 121170814 121170906 -38428877 + B4A SINE B4 6 96 -196 4 1509 280 96 18 55 chr3 121170906 121170961 -38428822 + B3A SINE B2 1 53 -145 4 1509 459 138 147 0 chr3 121170977 121171086 -38428697 + Lx3B LINE L1 6846 6970 -3 4 1509 923 237 54 0 chr3 121171105 121171291 -38428492 + B3 SINE B2 19 214 -2 4 1509 258 328 111 52 chr3 121171273 121171408 -38428375 + B4A SINE B4 71 213 -79 4 1509 189 132 0 0 chr3 121171412 121171450 -38428333 + (G)n Simple_repeat Simple_repeat 1 38 0 4 1509 203 256 0 0 chr3 121171535 121171578 -38428205 + (CA)n Simple_repeat Simple_repeat 2 44 0 4 1509 183 80 0 0 chr3 121172415 121172440 -38427343 + (GGGGA)n Simple_repeat Simple_repeat 3 27 0 4 1509 188 34 0 33 chr3 121172569 121172599 -38427184 + (TGGGGG)n Simple_repeat Simple_repeat 2 30 0 4 1509 460 244 40 103 chr3 121172944 121173118 -38426665 - RSINE1 SINE B4 0 165 3 4 1509 569 279 21 91 chr3 121173151 121173265 -38426518 + ID_B1 SINE B4 1 224 0 4 1509 842 111 16 8 chr3 121173265 121173392 -38426391 + B1_Mur1 SINE Alu 21 148 -1 4 1509 808 225 40 45 chr3 121173412 121173612 -38426171 + B4 SINE B4 94 292 0 4 1509 727 229 7 0 chr3 121173692 121173832 -38425951 - B3 SINE B2 -75 141 1 4 1509 402 115 0 0 chr3 121175217 121175278 -38424505 + (CA)n Simple_repeat Simple_repeat 2 62 0 4 1509 3040 132 34 38 chr3 121175371 121175898 -38423885 + RLTR11A LTR ERVK 1 525 -3 4 1509 1038 204 48 0 chr3 121176188 121176394 -38423389 + B3 SINE B2 1 216 0 4 1509 375 229 127 9 chr3 121176434 121176544 -38423239 + Lx6 LINE L1 7030 7152 -308 4 1509 395 283 41 57 chr3 121176539 121176888 -38422895 - L1M4 LINE L1 -779 5367 5025 4 1509 365 275 144 7 chr3 121176910 121177049 -38422734 - B3 SINE B2 0 216 59 4 1509 383 302 107 0 chr3 121177103 121177252 -38422531 - L1M4 LINE L1 -1197 4943 4779 4 1509 1206 170 13 27 chr3 121178062 121178286 -38421497 + URR1B DNA MER1_type 1 221 -4 4 1509 962 100 14 0 chr3 121178434 121178574 -38421209 - RLTR11B LTR ERVK 0 453 312 4 1509 213 136 44 22 chr3 121178583 121178628 -38421155 + CT-rich Low_complexity Low_complexity 4 49 0 4 1509 1552 100 5 0 chr3 121178670 121178890 -38420893 + RLTR11B LTR ERVK 228 448 -5 4 1509 354 45 0 0 chr3 121179928 121179972 -38419811 + (TTTTC)n Simple_repeat Simple_repeat 1 44 0 4 1509 1149 59 0 0 chr3 121179973 121180108 -38419675 - B1_Mus1 SINE Alu -13 135 1 4 1509 230 271 0 0 chr3 121183887 121183946 -38415837 + G-rich Low_complexity Low_complexity 1 59 0 4 1509 207 0 0 0 chr3 121184504 121184527 -38415256 + (TGG)n Simple_repeat Simple_repeat 2 24 0 4 1509 1190 35 21 0 chr3 121185510 121185654 -38414129 + B1_Mus2 SINE Alu 1 147 0 4 1509 198 292 0 0 chr3 121186131 121186179 -38413604 + MIRc SINE MIR 112 159 -109 4 1509 706 241 80 6 chr3 121187040 121187215 -38412568 - ID_B1 SINE B4 -21 203 16 4 1509 528 91 0 0 chr3 121187357 121187445 -38412338 + (TCTA)n Simple_repeat Simple_repeat 1 88 0 4 1509 596 315 76 9 chr3 121188841 121189065 -38410718 + MER58B DNA MER1_type 66 304 -37 4 1509 366 102 13 37 chr3 121189481 121189594 -38410189 - B2_Mm2 SINE B2 0 195 47 4 1509 1226 110 35 0 chr3 121189641 121189814 -38409969 - B2_Mm1t SINE B2 -14 179 1 4 1509 432 0 0 0 chr3 121190015 121190063 -38409720 + (TG)n Simple_repeat Simple_repeat 2 49 0 4 1509 534 306 0 29 chr3 121190063 121190201 -38409582 - ID_B1 SINE B4 -9 215 82 4 1509 227 321 148 19 chr3 121190210 121190318 -38409465 - PB1 SINE Alu 0 127 6 4 1509 238 275 116 0 chr3 121190611 121190680 -38409103 + RSINE1 SINE B4 4 80 -85 4 1509 180 111 0 0 chr3 121190694 121190721 -38409062 + (TAGA)n Simple_repeat Simple_repeat 2 28 0 4 1509 225 0 0 0 chr3 121190722 121190747 -38409036 + (TTG)n Simple_repeat Simple_repeat 1 25 0 4 1509 716 131 13 6 chr3 121190747 121190865 -38408918 - B1_Mus2 SINE Alu -13 134 16 4 1509 1093 66 7 0 chr3 121191005 121191141 -38408642 - B1_Mus1 SINE Alu -10 138 2 4 1509 23 33 0 0 chr3 121191649 121191679 -38408104 + AT_rich Low_complexity Low_complexity 1 30 0 4 1509 878 206 91 0 chr3 121191773 121191948 -38407835 + B3 SINE B2 1 191 -25 4 1509 519 69 0 0 chr3 121191958 121192030 -38407753 + (GGAA)n Simple_repeat Simple_repeat 4 75 0 4 1509 381 58 0 0 chr3 121192729 121192781 -38407002 + (CA)n Simple_repeat Simple_repeat 2 53 0 4 1509 804 98 0 0 chr3 121193517 121193650 -38406133 + (TG)n Simple_repeat Simple_repeat 2 134 0 4 1509 227 293 68 68 chr3 121194365 121194497 -38405286 + ZP3AR Satellite Satellite 26 157 -55 4 1509 556 252 6 120 chr3 121194451 121194609 -38405174 + ID_B1 SINE B4 13 152 -72 4 1509 1288 85 11 6 chr3 121194614 121194792 -38404991 + B2_Mm1t SINE B2 1 179 -14 4 1509 244 85 0 60 chr3 121196081 121196131 -38403652 + (TCCCC)n Simple_repeat Simple_repeat 1 47 0 4 1509 308 338 64 102 chr3 121196396 121196660 -38403123 - HAL1 LINE L1 -250 2257 2004 4 1509 342 0 0 0 chr3 121196722 121196760 -38403023 + (TC)n Simple_repeat Simple_repeat 2 39 0 4 1509 300 27 0 0 chr3 121196760 121196796 -38402987 + (TG)n Simple_repeat Simple_repeat 2 38 0 4 1509 202 205 0 0 chr3 121196798 121196837 -38402946 + (TCTCTG)n Simple_repeat Simple_repeat 3 41 0 4 1509 203 32 65 0 chr3 121196864 121196895 -38402888 + (TCTCTG)n Simple_repeat Simple_repeat 2 34 0 4 1509 468 0 0 0 chr3 121197395 121197447 -38402336 + (CAT)n Simple_repeat Simple_repeat 3 54 0 4 1509 483 254 33 20 chr3 121197448 121197583 -38402200 + ID_B1 SINE B4 82 216 -76 4 1509 369 0 0 0 chr3 121197583 121197624 -38402159 + (CAAA)n Simple_repeat Simple_repeat 2 42 0 4 1509 312 363 73 55 chr3 121197683 121197957 -38401826 - HAL1 LINE L1 -1349 1158 880 4 1509 2499 92 0 3 chr3 121198007 121198334 -38401449 + ORR1A3 LTR MaLR 1 326 0 4 1509 232 286 114 78 chr3 121198739 121198764 -38401019 - B3 SINE B2 -11 205 7 4 1509 611 224 12 66 chr3 121198764 121198931 -38400852 - RSINE1 SINE B4 0 165 8 4 1509 24 0 0 0 chr3 121199061 121199085 -38400698 + AT_rich Low_complexity Low_complexity 1 24 0 4 1509 1166 55 7 20 chr3 121199934 121200083 -38399700 + B1_Mus1 SINE Alu 2 148 0 4 1509 34 0 0 0 chr3 121200083 121200117 -38399666 + AT_rich Low_complexity Low_complexity 1 34 0 4 1509 1063 85 0 0 chr3 121200358 121200499 -38399284 - B1_Mus2 SINE Alu 0 147 7 4 1509 264 281 7 28 chr3 121200398 121200541 -38399242 - ORR1B1-int LTR MaLR -755 754 615 4 1509 216 0 0 0 chr3 121201206 121201230 -38398553 + (CAAAA)n Simple_repeat Simple_repeat 1 24 0 4 1509 556 277 92 73 chr3 121202712 121202985 -38396798 - B4 SINE B4 -14 278 1 4 1509 322 322 152 54 chr3 121203051 121203235 -38396548 - MER20 DNA MER1_type 0 219 18 4 1509 237 62 0 0 chr3 121204384 121204416 -38395367 - tRNA-Ala-GCY_ tRNA tRNA -41 34 3 4 1509 3235 141 75 12 chr3 121204445 121205006 -38394777 + L1_Mur2 LINE L1 59 654 -6058 5 1509 230 325 136 48 chr3 121205064 121205394 -38394389 + L2 LINE L2 2365 2723 -696 5 1509 344 81 54 0 chr3 121205652 121205726 -38394057 + (CCCTAA)n Simple_repeat Simple_repeat 4 81 0 5 1509 664 215 29 7 chr3 121205893 121206029 -38393754 - B1_Mm SINE Alu 0 147 9 5 1509 905 210 10 51 chr3 121206140 121206336 -38393447 - B3 SINE B2 0 216 29 5 1509 1623 231 16 18 chr3 121206833 121207210 -38392573 + MTD LTR MaLR 7 419 0 5 1509 703 181 97 8 chr3 121207518 121207652 -38392131 + B1_Mur4 SINE Alu 5 150 0 5 1509 354 287 89 0 chr3 121208427 121208528 -38391255 - PB1D7 SINE Alu 0 120 11 5 1509 1249 116 33 6 chr3 121208721 121208903 -38390880 - B2_Mm2 SINE B2 -8 187 1 5 1509 491 283 47 31 chr3 121209980 121210230 -38389553 + MLT1J LTR MaLR 39 311 -201 5 1509 260 341 30 75 chr3 121210862 121210995 -38388788 - Charlie10b DNA MER1_type -12 230 104 5 1509 424 272 266 23 chr3 121211058 121211276 -38388507 - B4 SINE B4 -19 273 3 5 1509 357 159 0 0 chr3 121211447 121211510 -38388273 + (TCCA)n Simple_repeat Simple_repeat 3 65 0 5 1509 871 262 13 13 chr3 121211832 121212056 -38387727 - ID_B1 SINE B4 0 224 1 5 1509 459 0 0 0 chr3 121213287 121213338 -38386445 + (CA)n Simple_repeat Simple_repeat 2 52 0 5 1509 677 311 77 91 chr3 121213879 121214243 -38385540 + ORR1E LTR MaLR 1 359 0 5 1509 697 188 27 40 chr3 121214654 121214804 -38384979 - B1F2 SINE Alu -1 148 1 5 1509 284 218 51 13 chr3 121214870 121214949 -38384834 - ID4_ SINE ID 0 83 2 5 1509 200 200 20 20 chr3 121215066 121215117 -38384666 + MIR3 SINE MIR 106 156 -52 5 1509 848 194 0 0 chr3 121215775 121215909 -38383874 - B1_Mus1 SINE Alu -10 138 5 5 1509 245 268 60 26 chr3 121216070 121216159 -38383624 + MIRc SINE MIR 13 104 -172 5 1509 459 35 0 0 chr3 121216970 121217027 -38382756 + (CA)n Simple_repeat Simple_repeat 2 58 0 5 1509 207 0 0 0 chr3 121217209 121217232 -38382551 + (TC)n Simple_repeat Simple_repeat 2 24 0 5 1509 786 260 87 0 chr3 121217288 121217553 -38382230 - B4A SINE B4 -4 288 1 5 1509 984 310 109 20 chr3 121218410 121218970 -38380813 - L1MD3 LINE L1 0 7995 7386 5 1509 359 273 88 99 chr3 121219155 121219326 -38380457 + LTR78 LTR ERV1 1134 1302 -2 5 1509 821 232 70 0 chr3 121219518 121219703 -38380080 - B3A SINE B2 0 198 1 5 1509 254 342 32 40 chr3 121219841 121219867 -38379916 - B1F SINE Alu -21 128 73 5 1509 291 301 0 88 chr3 121219867 121219894 -38379889 - ID_B1 SINE B4 -48 176 157 5 1509 2763 135 17 32 chr3 121219894 121220361 -38379422 + RMER6B LTR ERVK 2 461 0 5 1509 254 342 32 40 chr3 121220361 121220432 -38379351 - B1F SINE Alu -77 72 5 5 1509 291 301 0 88 chr3 121220432 121220446 -38379337 - ID_B1 SINE B4 -68 156 74 5 1509 490 247 219 6 chr3 121220493 121220676 -38379107 - ID_B1 SINE B4 -1 223 2 5 1509 2377 90 12 12 chr3 121220848 121221175 -38378608 - ORR1A2 LTR MaLR 0 327 1 5 1509 294 270 11 11 chr3 121221238 121221328 -38378455 - L1M4 LINE L1 -504 5675 5586 5 1509 416 270 160 57 chr3 121221674 121221937 -38377846 - B4 SINE B4 -1 291 2 5 1509 358 280 14 108 chr3 121222141 121222289 -38377494 - ORR1E LTR MaLR -168 191 58 5 1509 305 230 256 15 chr3 121222361 121222564 -38377219 - L1M4 LINE L1 -1499 4647 4396 5 1509 973 151 0 0 chr3 121222623 121222769 -38377014 - B1_Mur3 SINE Alu -3 146 1 5 1509 298 321 67 0 chr3 121222890 121223024 -38376759 - L1M4 LINE L1 -1980 4166 4024 5 1509 400 298 8 22 chr3 121223035 121223153 -38376630 - B1F SINE Alu 0 120 2 5 1509 21 0 0 0 chr3 121223252 121223273 -38376510 + AT_rich Low_complexity Low_complexity 1 21 0 5 1509 324 0 0 0 chr3 121224003 121224039 -38375744 + (TG)n Simple_repeat Simple_repeat 2 37 0 5 1509 328 256 251 35 chr3 121225328 121225559 -38374224 + B4 SINE B4 2 282 -10 5 1509 453 36 0 0 chr3 121225573 121225628 -38374155 + (TC)n Simple_repeat Simple_repeat 1 55 0 5 1509 21 0 0 0 chr3 121225871 121225892 -38373891 + AT_rich Low_complexity Low_complexity 1 21 0 5 1509 281 284 12 0 chr3 121226092 121226173 -38373610 - RMER1C Other Other -1 1341 1260 5 1509 371 226 167 67 chr3 121226110 121226227 -38373556 - Lx8 LINE L1 -1 7472 7344 5 1509 986 148 0 6 chr3 121226227 121226404 -38373379 + CT-rich Low_complexity Low_complexity 1 176 0 5 1509 672 48 0 0 chr3 121226404 121226487 -38373296 + (TCCCC)n Simple_repeat Simple_repeat 4 87 0 5 1509 371 226 167 67 chr3 121226487 121226548 -38373235 - Lx8 LINE L1 -130 7343 7276 5 1509 1170 124 11 21 chr3 121226548 121226737 -38373046 + B2_Mm2 SINE B2 5 191 -4 5 1509 203 118 82 0 chr3 121226773 121226858 -38372925 + (TA)n Simple_repeat Simple_repeat 1 92 0 5 1509 765 235 0 56 chr3 121226980 121227160 -38372623 - B3 SINE B2 -46 170 1 5 1509 441 54 0 0 chr3 121227347 121227403 -38372380 + (TG)n Simple_repeat Simple_repeat 1 56 0 5 1509 468 275 43 21 chr3 121227405 121227546 -38372237 - RSINE1 SINE B4 -19 146 3 5 1509 25 51 0 0 chr3 121229397 121229436 -38370347 + AT_rich Low_complexity Low_complexity 1 39 0 5 1509 398 301 52 41 chr3 121229673 121229867 -38369916 - MIRb SINE MIR -48 220 25 5 1509 543 101 0 0 chr3 121230671 121230750 -38369033 + (TG)n Simple_repeat Simple_repeat 2 80 0 5 1509 263 234 126 87 chr3 121230750 121230842 -38368941 - B1_Mur1 SINE Alu -7 142 43 5 1509 443 245 10 19 chr3 121230751 121230855 -38368928 - B4 SINE B4 -73 219 117 5 1509 245 109 22 0 chr3 121231113 121231159 -38368624 + (TTG)n Simple_repeat Simple_repeat 2 48 0 5 1509 504 164 141 41 chr3 121231500 121231607 -38368176 + ID_B1 SINE B4 92 212 -12 5 1509 314 0 49 0 chr3 121231607 121231648 -38368135 + (CAAA)n Simple_repeat Simple_repeat 3 45 0 5 1509 504 164 141 41 chr3 121231648 121231661 -38368122 + ID_B1 SINE B4 213 224 0 5 1509 306 98 0 0 chr3 121231781 121231832 -38367951 + (ATG)n Simple_repeat Simple_repeat 2 52 0 5 1509 393 22 0 0 chr3 121232152 121232198 -38367585 + (TG)n Simple_repeat Simple_repeat 1 46 0 5 1509 435 132 0 0 chr3 121232198 121232289 -38367494 + (GA)n Simple_repeat Simple_repeat 2 92 0 5 1509 393 22 0 0 chr3 121233186 121233232 -38366551 + (CA)n Simple_repeat Simple_repeat 2 47 0 5 1509 189 107 0 0 chr3 121234139 121234167 -38365616 + (TG)n Simple_repeat Simple_repeat 2 29 0 5 1509 1090 108 8 17 chr3 121235675 121235909 -38363874 + (TC)n Simple_repeat Simple_repeat 1 231 0 5 1509 414 276 30 29 chr3 121236170 121236314 -38363469 - Lx8 LINE L1 -379 7094 6937 5 1509 21 0 0 0 chr3 121236377 121236398 -38363385 + AT_rich Low_complexity Low_complexity 1 21 0 5 1509 338 292 161 26 chr3 121237800 121238073 -38361710 - MTE2b LTR MaLR -11 368 59 5 1509 189 0 0 0 chr3 121238321 121238342 -38361441 + (CCCCCA)n Simple_repeat Simple_repeat 2 22 0 5 1509 234 0 0 0 chr3 121238616 121238642 -38361141 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 5 1509 22 35 0 0 chr3 121239019 121239048 -38360735 + AT_rich Low_complexity Low_complexity 1 29 0 5 1509 284 306 34 51 chr3 121239216 121239333 -38360450 + MIRc SINE MIR 33 147 -121 5 1509 652 312 92 76 chr3 121239961 121240109 -38359674 + MLT1B LTR MaLR 10 150 -240 5 1509 375 279 159 32 chr3 121240109 121240298 -38359485 + ID_B1 SINE B4 1 213 -11 5 1509 652 312 92 76 chr3 121240298 121240517 -38359266 + MLT1B LTR MaLR 151 383 -7 5 1509 432 0 0 0 chr3 121240623 121240671 -38359112 + (TG)n Simple_repeat Simple_repeat 1 48 0 5 1509 7410 81 27 16 chr3 121241095 121241513 -38358270 + RLTR13D5 LTR ERVK 1 416 -607 5 188 1333 62 56 0 chr3 121241513 121241691 -38358092 - B2_Mm1t SINE B2 -5 188 1 5 1510 7410 81 27 16 chr3 121241691 121242282 -38357501 + RLTR13D5 LTR ERVK 417 1021 -2 5 1510 477 0 0 0 chr3 121243335 121243388 -38356395 + (GA)n Simple_repeat Simple_repeat 2 54 0 5 1510 229 305 0 0 chr3 121243589 121243648 -38356135 - tRNA-Ala-GCY_ tRNA tRNA -8 67 9 5 1510 1288 103 43 0 chr3 121243772 121243956 -38355827 + B2_Mm2 SINE B2 2 193 -2 5 1510 1151 115 40 0 chr3 121243990 121244164 -38355619 + B2_Mm2 SINE B2 1 181 -14 5 1510 265 138 350 87 chr3 121244187 121244290 -38355493 + B2_Mm2 SINE B2 55 184 -9 5 1510 1189 102 18 0 chr3 121244286 121244452 -38355331 + B2_Mm2 SINE B2 27 195 0 5 1510 942 182 0 0 chr3 121244702 121244850 -38354933 + B1_Mur4 SINE Alu 2 149 -1 5 1510 557 293 40 6 chr3 121245122 121245297 -38354486 + B4 SINE B4 3 183 -109 5 1510 301 348 13 19 chr3 121245347 121245505 -38354278 + (CA)n Simple_repeat Simple_repeat 1 157 0 5 1510 270 191 46 31 chr3 121246592 121246657 -38353126 - MIRc SINE MIR -156 120 55 5 1510 722 224 98 35 chr3 121246864 121247067 -38352716 - B3 SINE B2 0 216 1 5 1510 638 163 154 0 chr3 121247118 121247241 -38352542 - B1_Mur2 SINE Alu -5 144 3 5 1510 287 312 81 18 chr3 121247274 121247385 -38352398 - B1F SINE Alu -20 129 12 5 1510 270 73 0 0 chr3 121248815 121248856 -38350927 + (TAAA)n Simple_repeat Simple_repeat 4 44 0 5 1510 1241 98 21 16 chr3 121250229 121250415 -38349368 - B2_Mm2 SINE B2 -8 187 1 5 1510 195 285 8 0 chr3 121250814 121250870 -38348913 - MIRc SINE MIR -162 106 49 5 1510 195 42 0 0 chr3 121251468 121251492 -38348291 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 5 1510 1176 153 51 9 chr3 121251941 121252158 -38347625 - URR1A DNA MER1_type 0 226 1 5 1510 186 43 0 0 chr3 121252176 121252199 -38347584 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 5 1510 556 250 22 94 chr3 121253396 121253577 -38346206 - B3 SINE B2 -1 215 48 5 1510 839 61 0 9 chr3 121253593 121253708 -38346075 + (TCCC)n Simple_repeat Simple_repeat 2 115 0 5 1510 546 233 0 0 chr3 121253732 121253835 -38345948 - B1_Mur3 SINE Alu -40 109 7 5 1510 360 307 88 38 chr3 121253840 121253999 -38345784 - L1MD LINE L1 -792 5354 5188 5 1510 341 239 24 71 chr3 121254024 121254150 -38345633 - L1MA6 LINE L1 -17 6283 6164 6 1510 385 287 69 5 chr3 121254182 121254385 -38345398 - L1M4 LINE L1 -944 5202 4987 6 1510 920 234 96 0 chr3 121254387 121254584 -38345199 + B3 SINE B2 1 216 0 6 1510 203 0 0 36 chr3 121254630 121254658 -38345125 + (TCC)n Simple_repeat Simple_repeat 3 29 0 6 1510 583 246 191 30 chr3 121254700 121254935 -38344848 - ERVL-E-int LTR ERVL -3182 2532 2260 6 1510 346 216 108 0 chr3 121254939 121255013 -38344770 + B1F SINE Alu 51 132 -17 6 1510 261 333 18 48 chr3 121255204 121255371 -38344412 - ERVL-E-int LTR ERVL -4587 1127 966 6 1510 761 297 70 47 chr3 121255429 121255729 -38344054 - ERVL-E-int LTR ERVL -4738 929 623 6 1510 406 250 72 67 chr3 121257429 121257622 -38342161 - L1M3 LINE L1 -611 5578 5385 6 1510 361 161 83 6 chr3 121257912 121258068 -38341715 + (TA)n Simple_repeat Simple_repeat 1 168 0 6 1510 197 160 71 8 chr3 121258082 121258208 -38341575 + (TA)n Simple_repeat Simple_repeat 1 134 0 6 1510 26 0 0 0 chr3 121258218 121258244 -38341539 + AT_rich Low_complexity Low_complexity 1 26 0 6 1510 215 267 61 65 chr3 121258602 121258756 -38341027 - L2c LINE L2 -217 3170 3015 6 1510 257 257 241 27 chr3 121258876 121259025 -38340758 + MTEa LTR MaLR 1 197 -182 6 1510 449 286 14 36 chr3 121259130 121259268 -38340515 + MTEa LTR MaLR 238 372 -7 6 1510 202 283 0 0 chr3 121260399 121260452 -38339331 + T-rich Low_complexity Low_complexity 4 56 0 6 1510 526 225 43 46 chr3 121260545 121260727 -38339056 + B3 SINE B2 2 191 -2 6 1510 625 252 6 69 chr3 121261114 121261289 -38338494 - RSINE1 SINE B4 0 165 2 6 1510 26 30 0 0 chr3 121261292 121261325 -38338458 + AT_rich Low_complexity Low_complexity 1 33 0 6 1510 185 35 69 0 chr3 121264057 121264086 -38335697 + (CCCCCA)n Simple_repeat Simple_repeat 5 35 0 6 1510 602 267 216 9 chr3 121264137 121264364 -38335419 + B4 SINE B4 1 274 -18 6 1510 229 312 87 26 chr3 121264631 121264746 -38335037 - MIRc SINE MIR -145 123 2 6 1510 853 204 193 0 chr3 121265135 121265316 -38334467 + B3 SINE B2 1 216 0 6 1510 1682 129 126 28 chr3 121265375 121265693 -38334090 - ORR1D1 LTR MaLR 0 374 26 6 1510 216 246 17 34 chr3 121265765 121265824 -38333959 - MIRc SINE MIR -147 121 64 6 1510 931 282 118 6 chr3 121265935 121266274 -38333509 + MTEb LTR MaLR 3 379 0 6 1510 1028 233 24 14 chr3 121266775 121266988 -38332795 - B3 SINE B2 -1 215 1 6 1510 1993 132 171 80 chr3 121267105 121267367 -38332416 + RLTR16 LTR ERVK 1 333 -172 6 1510 1704 26 0 0 chr3 121267367 121267560 -38332223 + B2_Mm1a SINE B2 1 193 0 6 1510 1993 132 171 80 chr3 121267560 121267758 -38332025 + RLTR16 LTR ERVK 334 503 -2 6 1510 225 132 0 0 chr3 121267781 121267819 -38331964 + (A)n Simple_repeat Simple_repeat 1 38 0 6 1510 207 0 0 0 chr3 121267905 121267928 -38331855 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 6 1510 1186 64 64 0 chr3 121267929 121268086 -38331697 - B2_Mm2 SINE B2 -27 168 2 6 1510 588 323 100 33 chr3 121268771 121269011 -38330772 + B4A SINE B4 29 284 -8 6 1510 210 314 0 0 chr3 121270589 121270707 -38329076 + CT-rich Low_complexity Low_complexity 2 119 0 6 1510 1156 75 0 0 chr3 121271164 121271311 -38328472 - B1_Mus1 SINE Alu 0 148 2 6 1510 296 297 46 103 chr3 121271771 121272034 -38327749 - RMER17C LTR ERVK -41 369 122 6 1510 256 260 239 52 chr3 121274656 121274790 -38324993 - MIRm SINE MIR -93 183 25 6 1510 1789 180 47 6 chr3 121274927 121275290 -38324493 - ORR1C1 LTR MaLR 0 378 1 6 1510 3159 64 79 135 chr3 121275737 121276279 -38323504 + RLTR1B LTR ERV1 1 512 0 6 1510 620 368 78 59 chr3 121276289 121276829 -38322954 + LTR82A LTR ERVL 22 571 -301 6 1510 594 310 176 10 chr3 121276894 121277200 -38322583 - MLT1F LTR MaLR -24 524 168 6 1510 21 0 0 0 chr3 121277334 121277355 -38322428 + AT_rich Low_complexity Low_complexity 1 21 0 6 1510 1181 183 0 9 chr3 121278473 121278683 -38321100 - B3 SINE B2 -2 214 7 6 1510 495 273 19 101 chr3 121278690 121278849 -38320934 - B1F SINE Alu -3 146 1 6 1510 552 261 43 1 chr3 121279231 121279389 -38320394 + ID_B1 SINE B4 1 167 -125 6 1510 320 308 0 21 chr3 121279664 121279757 -38320026 + ID_B1 SINE B4 134 224 0 6 1510 207 0 0 0 chr3 121279767 121279790 -38319993 + (A)n Simple_repeat Simple_repeat 1 23 0 6 1510 655 299 124 25 chr3 121280631 121280953 -38318830 + ORR1E LTR MaLR 1 354 -5 6 1510 590 223 158 32 chr3 121281241 121281431 -38318352 + B3 SINE B2 1 214 -2 6 1510 2083 136 112 70 chr3 121281485 121281825 -38317958 - RLTR41 LTR ERV1 0 446 128 6 1510 234 0 0 0 chr3 121281825 121281851 -38317932 + (C)n Simple_repeat Simple_repeat 1 26 0 6 1510 2083 136 112 70 chr3 121281851 121281938 -38317845 - RLTR41 LTR ERV1 -319 127 1 6 1510 304 53 52 17 chr3 121282014 121282072 -38317711 + (TGGGGG)n Simple_repeat Simple_repeat 2 61 0 6 1510 1295 14 0 13 chr3 121282110 121282259 -38317524 + B1_Mus1 SINE Alu 2 148 0 6 1510 329 58 0 19 chr3 121282314 121282367 -38317416 + (TGGGGG)n Simple_repeat Simple_repeat 1 52 0 6 1510 426 281 172 54 chr3 121283454 121283791 -38315992 - MTEb LTR MaLR -2 377 9 6 1510 348 270 30 53 chr3 121284355 121284488 -38315295 - L1M5 LINE L1 -2693 3453 3324 6 1510 242 331 23 63 chr3 121284511 121284685 -38315098 - B3A SINE B2 -15 183 17 6 1510 575 243 109 75 chr3 121284562 121284709 -38315074 - RSINE1 SINE B4 -9 156 5 6 1510 331 267 62 0 chr3 121284714 121284866 -38314917 - L1M5 LINE L1 -2821 3325 3165 6 1510 1043 245 298 9 chr3 121284887 121285349 -38314434 - L1MC3 LINE L1 -170 7615 7021 6 1510 572 327 102 68 chr3 121285378 121285742 -38314041 - L1M5 LINE L1 -3187 2959 2571 6 1510 1374 95 21 0 chr3 121285742 121285932 -38313851 - B2_Mm2 SINE B2 0 195 2 6 1510 572 327 102 68 chr3 121285932 121286036 -38313747 - L1M5 LINE L1 -3576 2570 2475 6 1510 250 270 26 17 chr3 121286081 121286198 -38313585 - L1MD LINE L1 -3700 2446 2329 6 1510 308 263 244 34 chr3 121286335 121286540 -38313243 - ORR1E LTR MaLR -108 251 4 6 1510 358 295 23 37 chr3 121286613 121286828 -38312955 + RMER17D LTR ERVK 335 546 -343 6 1510 315 0 0 0 chr3 121286852 121286887 -38312896 + (TG)n Simple_repeat Simple_repeat 1 35 0 6 1510 378 0 0 0 chr3 121286887 121286928 -38312855 + (GA)n Simple_repeat Simple_repeat 1 42 0 6 1510 354 196 19 9 chr3 121287289 121287397 -38312386 + C-rich Low_complexity Low_complexity 2 110 0 6 1510 248 346 70 70 chr3 121287398 121287513 -38312270 - PB1D9 SINE Alu -5 115 1 6 1510 351 253 13 0 chr3 121287513 121287539 -38312244 - ID SINE ID -143 81 55 6 1510 189 0 0 0 chr3 121288205 121288226 -38311557 + (T)n Simple_repeat Simple_repeat 1 21 0 6 1510 1813 117 4 25 chr3 121288848 121289129 -38310654 + Lx2 LINE L1 6723 6997 0 6 1510 627 57 0 0 chr3 121289161 121289249 -38310534 + (TG)n Simple_repeat Simple_repeat 2 89 0 6 1510 198 0 0 0 chr3 121289275 121289297 -38310486 + (TG)n Simple_repeat Simple_repeat 2 23 0 6 1510 338 303 10 20 chr3 121289303 121289404 -38310379 + PB1D10 SINE Alu 18 117 0 6 1510 1911 274 85 50 chr3 121289430 121290533 -38309250 + L1MA6 LINE L1 4990 6122 -178 6 1510 213 0 81 0 chr3 121290533 121290570 -38309213 + (CAAAA)n Simple_repeat Simple_repeat 2 41 0 6 1510 1911 275 68 63 chr3 121290570 121290615 -38309168 + L1MA6 LINE L1 6123 6175 -125 6 1510 389 257 72 18 chr3 121290910 121291021 -38308762 + MER20 DNA MER1_type 85 201 -18 6 1510 25 0 0 0 chr3 121291294 121291319 -38308464 + AT_rich Low_complexity Low_complexity 1 25 0 6 1510 223 229 106 77 chr3 121291593 121291697 -38308086 - MIRc SINE MIR -160 108 2 6 1510 256 263 55 109 chr3 121292738 121292866 -38306917 - B1_Mus1 SINE Alu -8 140 20 6 1510 781 192 78 21 chr3 121293348 121293539 -38306244 - B3 SINE B2 -13 203 2 6 1510 840 264 75 42 chr3 121293667 121293932 -38305851 + MTEa LTR MaLR 1 274 -105 6 1510 507 234 77 13 chr3 121294343 121294492 -38305291 + MTEa LTR MaLR 245 386 -33 6 1510 765 157 0 17 chr3 121295690 121295865 -38303918 + GA-rich Low_complexity Low_complexity 2 173 0 6 1510 851 246 35 10 chr3 121295865 121296066 -38303717 + MTEa LTR MaLR 171 376 -3 6 1510 2176 111 9 6 chr3 121297084 121297402 -38302381 + ORR1A2 LTR MaLR 1 319 -8 6 1510 222 37 0 0 chr3 121297477 121297504 -38302279 + (CAAT)n Simple_repeat Simple_repeat 2 28 0 6 1510 407 241 18 44 chr3 121297915 121298028 -38301755 - PB1D10 SINE Alu -7 110 1 6 1510 239 342 0 50 chr3 121299152 121299232 -38300551 + BC1_Mm scRNA scRNA 6 81 -71 6 1510 951 300 35 4 chr3 121299162 121299423 -38300360 + B4A SINE B4 16 284 -8 6 1510 417 103 0 0 chr3 121299431 121299499 -38300284 + (CA)n Simple_repeat Simple_repeat 1 68 0 6 1510 519 17 0 0 chr3 121301410 121301470 -38298313 + (TG)n Simple_repeat Simple_repeat 1 60 0 6 1510 237 244 85 118 chr3 121303131 121303284 -38296499 - YREP_Mm Unknown Unknown -1485 327 180 6 1510 1087 72 0 0 chr3 121303150 121303288 -38296495 + B1_Mm SINE Alu 10 147 0 6 1510 1755 136 47 44 chr3 121304407 121304618 -38295165 - RMER17C LTR ERVK 0 410 188 6 1510 207 0 0 0 chr3 121304618 121304641 -38295142 + (CAGAGA)n Simple_repeat Simple_repeat 2 24 0 6 1510 1755 136 47 44 chr3 121304641 121304838 -38294945 - RMER17C LTR ERVK -223 187 1 6 1510 29 0 0 0 chr3 121304846 121304875 -38294908 + AT_rich Low_complexity Low_complexity 1 29 0 6 1510 954 295 59 17 chr3 121305586 121305941 -38293842 + MLT1A1 LTR MaLR 1 408 0 6 1510 244 330 130 36 chr3 121306165 121306357 -38293426 + L2b LINE L2 3135 3344 -31 6 1510 303 276 11 75 chr3 121306394 121306488 -38293295 - PB1D10 SINE Alu -29 88 1 6 1510 188 355 17 76 chr3 121308129 121308248 -38291535 - L2c LINE L2 0 3387 3276 6 1510 23 0 0 0 chr3 121308991 121309014 -38290769 + AT_rich Low_complexity Low_complexity 1 23 0 6 1510 1780 227 14 77 chr3 121309524 121309655 -38290128 + MTD LTR MaLR 6 127 -292 6 1510 2523 108 14 11 chr3 121309655 121310021 -38289762 - ORR1B2 LTR MaLR 0 367 1 6 1510 1780 227 14 77 chr3 121310021 121310038 -38289745 + MTD LTR MaLR 128 137 -282 6 1510 1256 182 5 0 chr3 121310038 121310247 -38289536 - B3 SINE B2 -6 210 1 6 1510 1780 227 14 77 chr3 121310247 121310537 -38289246 + MTD LTR MaLR 138 417 -2 6 1510 1223 41 0 7 chr3 121310838 121310985 -38288798 + B1_Mus2 SINE Alu 2 147 0 6 1510 619 251 36 25 chr3 121310997 121311193 -38288590 + L1MA5 LINE L1 6102 6299 -1 6 1510 533 15 15 0 chr3 121311931 121311997 -38287786 + (TC)n Simple_repeat Simple_repeat 2 68 0 6 1510 404 343 110 39 chr3 121311997 121312268 -38287515 - LTR16C LTR ERVL -9 480 188 7 1510 265 315 34 51 chr3 121312281 121312398 -38287385 - LTR16C LTR ERVL -339 150 36 7 1510 226 217 0 0 chr3 121312810 121312856 -38286927 + (CCTG)n Simple_repeat Simple_repeat 2 47 0 7 1510 187 361 48 32 chr3 121312904 121313030 -38286753 + L2c LINE L2 3254 3381 -6 7 1510 574 181 7 15 chr3 121313159 121313294 -38286489 + CT-rich Low_complexity Low_complexity 3 136 0 7 1510 255 269 99 84 chr3 121313694 121313714 -38286069 - L1MD2 LINE L1 -1 6358 6336 7 1510 1277 103 16 21 chr3 121313714 121313902 -38285881 + B2_Mm2 SINE B2 2 188 -7 7 1510 255 269 99 84 chr3 121313902 121314072 -38285711 - L1MD2 LINE L1 -24 6335 6165 7 1510 561 15 0 0 chr3 121314281 121314347 -38285436 + (TC)n Simple_repeat Simple_repeat 1 66 0 7 1510 324 239 52 75 chr3 121314466 121314743 -38285040 - L1MD2 LINE L1 -940 5206 4879 7 1510 1346 222 49 7 chr3 121314794 121315102 -38284681 - Lx9 LINE L1 -327 7317 6997 7 1510 1053 172 160 28 chr3 121315092 121315374 -38284409 + Lx9 LINE L1 7309 7627 -17 7 1510 966 321 81 14 chr3 121315361 121316010 -38283773 - L1MD2 LINE L1 -1296 4850 4183 7 1510 375 286 47 6 chr3 121316617 121316786 -38282997 + (TG)n Simple_repeat Simple_repeat 2 177 0 7 1510 1072 256 44 4 chr3 121316805 121317079 -38282704 - B4A SINE B4 -6 286 2 7 1510 1879 179 155 38 chr3 121317777 121318300 -38281483 + RLTR31A_Mm LTR ERVK 1 584 0 7 1510 827 252 102 129 chr3 121318771 121319259 -38280524 - RLTR12B LTR ERVK -43 485 11 7 1510 542 227 169 49 chr3 121319645 121319880 -38279903 - MLT2B4 LTR ERVL -150 247 1 7 1510 1333 89 0 32 chr3 121319925 121320111 -38279672 + B2_Mm2 SINE B2 2 181 -14 7 1510 349 311 142 39 chr3 121321495 121321776 -38278007 + L2a LINE L2 2943 3252 -174 7 1510 324 0 0 0 chr3 121321914 121321950 -38277833 + (TC)n Simple_repeat Simple_repeat 2 37 0 7 1510 249 33 0 0 chr3 121321950 121321979 -38277804 + (TA)n Simple_repeat Simple_repeat 1 30 0 7 1510 21 0 0 0 chr3 121322359 121322380 -38277403 + AT_rich Low_complexity Low_complexity 1 21 0 7 1510 1002 217 34 0 chr3 121322388 121322595 -38277188 + B3 SINE B2 3 216 0 7 1510 226 143 0 0 chr3 121322608 121322650 -38277133 + B3 SINE B2 175 216 0 7 1510 1006 237 5 5 chr3 121322654 121322870 -38276913 + B3 SINE B2 1 216 0 7 1510 684 176 67 8 chr3 121323086 121323206 -38276577 + B1F SINE Alu 9 135 -14 7 1510 3315 142 4 24 chr3 121323235 121323774 -38276009 - RLTR12B LTR ERVK 0 528 1 7 1510 965 235 34 12 chr3 121323990 121324268 -38275515 + ORR1D1 LTR MaLR 5 330 -54 7 1510 270 0 0 0 chr3 121324268 121324298 -38275485 + (TG)n Simple_repeat Simple_repeat 2 31 0 7 1510 690 251 78 32 chr3 121324298 121324310 -38275473 + ORR1D1 LTR MaLR 331 343 -41 7 1510 382 131 0 0 chr3 121324301 121324362 -38275421 + RLTR12B LTR ERVK 366 426 -102 7 1510 317 276 146 55 chr3 121324349 121324514 -38275269 + B3 SINE B2 37 216 0 7 1510 210 350 9 64 chr3 121324957 121325067 -38274716 + L2a LINE L2 3322 3425 -1 7 1510 621 264 198 33 chr3 121325872 121326224 -38273559 - RLTR16 LTR ERVK -257 435 1 7 1510 2149 136 34 6 chr3 121326228 121326582 -38273201 + ORR1B1 LTR MaLR 31 394 0 7 1510 2629 132 64 5 chr3 121326582 121327022 -38272761 - Lx5 LINE L1 -952 6098 5633 7 1510 4630 232 8 20 chr3 121327018 121327956 -38271827 + Lx5 LINE L1 6123 7049 -1 7 1510 895 314 51 10 chr3 121328093 121328386 -38271397 - MLT1A1 LTR MaLR 0 408 104 7 1510 519 236 210 17 chr3 121329773 121329954 -38269829 + B3 SINE B2 1 216 0 7 1510 214 330 32 11 chr3 121330056 121330151 -38269632 - L2c LINE L2 -181 3206 3110 7 1510 2808 129 34 11 chr3 121330171 121330617 -38269166 - RMER19B LTR ERVK -12 890 435 7 1510 1224 192 3 149 chr3 121330616 121330898 -38268885 - RMER19B LTR ERVK -647 255 15 7 1510 180 0 0 0 chr3 121331135 121331155 -38268628 + (CCA)n Simple_repeat Simple_repeat 1 20 0 7 1510 278 127 0 52 chr3 121331759 121331817 -38267966 + C-rich Low_complexity Low_complexity 2 56 0 7 1510 728 289 132 89 chr3 121334272 121334538 -38265245 - L1MB8 LINE L1 -11 6167 5893 7 1510 588 125 25 82 chr3 121334538 121334660 -38265123 - PB1D9 SINE Alu -4 116 2 7 1510 728 289 132 89 chr3 121334660 121334854 -38264929 - L1MB8 LINE L1 -286 5892 5698 7 1510 1316 111 21 0 chr3 121334854 121335044 -38264739 - B2_Mm2 SINE B2 -1 194 1 7 1510 728 289 132 89 chr3 121335044 121335297 -38264486 - L1MB8 LINE L1 -481 5697 5423 7 1510 707 109 2 1 chr3 121335527 121335633 -38264150 + B2_Mm2 SINE B2 1 107 -91 7 1510 535 331 21 2 chr3 121335679 121335880 -38263903 + B3A SINE B2 12 216 0 7 1510 517 324 65 5 chr3 121335960 121336146 -38263637 + B3A SINE B2 2 198 0 7 1510 332 203 29 115 chr3 121336378 121336517 -38263266 + L1ME2z LINE L1 6197 6323 -121 7 1510 523 182 16 0 chr3 121336517 121336638 -38263145 + (TAGA)n Simple_repeat Simple_repeat 1 123 0 7 1510 751 274 226 7 chr3 121337398 121337506 -38262277 + MLT1A1 LTR MaLR 26 155 -253 7 1510 414 0 0 0 chr3 121337506 121337552 -38262231 + (TG)n Simple_repeat Simple_repeat 1 46 0 7 1510 528 16 0 0 chr3 121337552 121337612 -38262171 + (GA)n Simple_repeat Simple_repeat 1 61 0 7 1510 751 274 226 7 chr3 121337612 121337803 -38261980 + MLT1A1 LTR MaLR 156 391 -17 7 1510 1289 244 126 21 chr3 121337804 121338176 -38261607 - MTD LTR MaLR 0 419 9 7 1510 712 269 13 0 chr3 121340091 121340240 -38259543 - RSINE1 SINE B4 -13 152 2 7 1510 242 345 45 22 chr3 121341150 121341239 -38258544 + MER91A DNA Tip100 84 174 -22 7 1510 655 168 14 0 chr3 121342171 121342314 -38257469 + GA-rich Low_complexity Low_complexity 2 146 0 7 1510 280 327 20 0 chr3 121342864 121342965 -38256818 + (TCCA)n Simple_repeat Simple_repeat 1 103 0 7 1510 323 347 45 28 chr3 121343129 121343307 -38256476 + MIR SINE MIR 69 249 -13 7 1510 243 314 47 99 chr3 121345238 121345429 -38254354 - LTR85a LTR Gypsy? -446 256 76 7 1510 257 206 35 162 chr3 121345572 121345763 -38254020 + L1M1 LINE L1 5748 5929 -371 7 1510 186 255 66 33 chr3 121346228 121346325 -38253458 - MIR SINE MIR -119 149 46 7 1510 360 214 15 45 chr3 121346772 121347046 -38252737 + (TATATG)n Simple_repeat Simple_repeat 1 265 0 7 1510 712 249 52 52 chr3 121347712 121347924 -38251859 + ID_B1 SINE B4 1 212 -12 7 1510 457 78 52 0 chr3 121348175 121348252 -38251531 + (TCTCCC)n Simple_repeat Simple_repeat 3 83 0 7 1510 410 289 194 36 chr3 121348806 121349054 -38250729 + B4 SINE B4 2 288 -4 7 1510 351 0 0 0 chr3 121349069 121349108 -38250675 + (CA)n Simple_repeat Simple_repeat 1 39 0 7 1510 247 299 57 11 chr3 121349257 121349345 -38250438 + MIRc SINE MIR 37 128 -140 7 1510 320 288 30 46 chr3 121350703 121350834 -38248949 + MLT1A1 LTR MaLR 268 396 -12 7 1510 189 0 0 0 chr3 121351233 121351254 -38248529 + (CAAAC)n Simple_repeat Simple_repeat 2 22 0 7 1510 478 270 109 78 chr3 121351728 121351985 -38247798 - B4 SINE B4 -2 290 26 7 1510 23 33 0 0 chr3 121352825 121352855 -38246928 + AT_rich Low_complexity Low_complexity 1 30 0 7 1510 204 297 52 52 chr3 121352957 121353053 -38246730 - MIR SINE MIR -79 183 88 7 1510 330 91 0 0 chr3 121353820 121353875 -38245908 + (T)n Simple_repeat Simple_repeat 1 55 0 7 1510 198 0 0 0 chr3 121354325 121354347 -38245436 + (TATG)n Simple_repeat Simple_repeat 1 22 0 7 1510 799 234 0 6 chr3 121354365 121354528 -38245255 - RSINE1 SINE B4 -1 164 3 7 1510 252 353 130 7 chr3 121355717 121355871 -38243912 + L4 LINE RTE 799 971 -1058 7 1510 896 176 0 0 chr3 121356027 121356169 -38243614 + B1_Mur4 SINE Alu 4 145 -5 7 1510 26 30 0 0 chr3 121356169 121356202 -38243581 + AT_rich Low_complexity Low_complexity 1 33 0 7 1510 234 0 0 0 chr3 121356233 121356259 -38243524 + (TTTA)n Simple_repeat Simple_repeat 4 29 0 7 1510 416 309 7 102 chr3 121356755 121356892 -38242891 + RSINE1 SINE B4 29 152 -13 7 1510 1224 99 0 0 chr3 121356897 121357151 -38242632 + (TAGA)n Simple_repeat Simple_repeat 1 254 0 7 1510 213 39 0 0 chr3 121357263 121357289 -38242494 + (CCCCCA)n Simple_repeat Simple_repeat 1 26 0 7 1510 225 108 0 0 chr3 121357990 121358027 -38241756 + (CACAA)n Simple_repeat Simple_repeat 4 40 0 7 1510 720 247 28 28 chr3 121358028 121358207 -38241576 + ID_B1 SINE B4 38 216 -8 7 1510 723 293 92 64 chr3 121358814 121359061 -38240722 + B4 SINE B4 2 265 -27 7 1510 342 0 0 0 chr3 121359061 121359099 -38240684 + (CA)n Simple_repeat Simple_repeat 2 39 0 7 1510 723 293 92 64 chr3 121359099 121359132 -38240651 + B4 SINE B4 266 290 -2 7 1510 347 294 202 28 chr3 121359548 121359943 -38239840 - L2 LINE L2 -535 2884 2421 7 1510 213 121 0 0 chr3 121360219 121360252 -38239531 + (AGGGGG)n Simple_repeat Simple_repeat 5 37 0 7 1510 22 0 0 0 chr3 121360674 121360696 -38239087 + AT_rich Low_complexity Low_complexity 1 22 0 7 1510 367 365 66 0 chr3 121360805 121361002 -38238781 + MIR SINE MIR 10 219 -43 7 1510 658 324 129 44 chr3 121361331 121361516 -38238267 - L1ME3A LINE L1 -32 6141 5965 7 1510 331 263 16 66 chr3 121361516 121361638 -38238145 - PB1D10 SINE Alu -1 116 1 7 1510 658 324 129 44 chr3 121361638 121362110 -38237673 - L1ME3A LINE L1 -209 5964 5428 7 1510 834 290 114 30 chr3 121362126 121362460 -38237323 - MLT1A0 LTR MaLR -3 362 1 7 1510 278 157 90 67 chr3 121362462 121362551 -38237232 - L1ME3A LINE L1 -755 5418 5328 7 1510 834 110 7 14 chr3 121363613 121363761 -38236022 + (GAA)n Simple_repeat Simple_repeat 2 148 0 7 1510 196 348 158 6 chr3 121363924 121364089 -38235694 + MIRc SINE MIR 67 256 -12 7 1510 498 271 30 95 chr3 121364250 121364450 -38235333 - RMER30 DNA MER1_type -8 194 8 7 1510 432 0 0 0 chr3 121365585 121365633 -38234150 + (TG)n Simple_repeat Simple_repeat 2 49 0 7 1510 352 122 8 169 chr3 121366365 121366483 -38233300 + Lx9 LINE L1 7546 7644 0 7 1510 713 228 149 21 chr3 121366496 121366684 -38233099 + B3 SINE B2 3 214 -2 7 1510 388 297 65 25 chr3 121367008 121367205 -38232578 + MIR3 SINE MIR 35 242 -34 7 1510 683 261 35 10 chr3 121367683 121367881 -38231902 + B3A SINE B2 1 203 -13 7 1510 1928 287 68 31 chr3 121367889 121368813 -38230970 + L1M4 LINE L1 4372 5329 -817 7 1510 268 284 45 0 chr3 121368813 121368880 -38230903 - LTR16C LTR ERVL -232 257 188 7 1510 445 348 77 17 chr3 121369286 121369467 -38230316 - MER110A LTR ERV1 -112 356 165 7 1510 1146 174 9 64 chr3 121370284 121370517 -38229266 + URR1B DNA MER1_type 1 220 -5 7 1510 1416 237 94 10 chr3 121371358 121371742 -38228041 - MTD LTR MaLR 0 419 4 8 1511 289 246 15 0 chr3 121373330 121373395 -38226388 + MLT1A0 LTR MaLR 23 88 -417 8 1511 504 273 113 0 chr3 121373441 121373591 -38226192 + MLT1A0 LTR MaLR 199 365 0 8 1511 1266 250 88 11 chr3 121374007 121374359 -38225424 + MTEa LTR MaLR 1 379 0 8 1511 423 0 0 0 chr3 121374566 121374613 -38225170 + (TG)n Simple_repeat Simple_repeat 2 48 0 8 1511 396 0 0 0 chr3 121375426 121375470 -38224313 + (CA)n Simple_repeat Simple_repeat 2 45 0 8 1511 369 43 0 0 chr3 121375482 121375529 -38224254 + (CCCTG)n Simple_repeat Simple_repeat 2 48 0 8 1511 489 291 96 28 chr3 121376142 121376319 -38223464 + B4 SINE B4 24 212 -80 8 1511 491 179 12 0 chr3 121376316 121376400 -38223383 - 5S rRNA rRNA -30 91 7 8 1511 338 283 0 42 chr3 121376398 121376494 -38223289 + B4 SINE B4 195 286 -6 8 1511 21 36 0 0 chr3 121376496 121376524 -38223259 + AT_rich Low_complexity Low_complexity 1 28 0 8 1511 381 217 16 59 chr3 121376574 121376818 -38222965 + (TTATA)n Simple_repeat Simple_repeat 1 233 0 8 1511 231 312 39 88 chr3 121377340 121377442 -38222341 + MIRm SINE MIR 163 259 -17 8 1511 265 250 0 132 chr3 121377362 121377445 -38222338 + L2a LINE L2 3300 3407 -19 8 1511 563 256 61 23 chr3 121377556 121377688 -38222095 + ID_B1 SINE B4 82 218 -6 8 1511 2070 199 0 36 chr3 121378696 121379086 -38220697 + RLTR14 LTR ERV1 1 376 -6 8 1511 246 62 0 0 chr3 121380819 121380851 -38218932 + (TATG)n Simple_repeat Simple_repeat 1 32 0 8 1511 406 260 134 108 chr3 121381208 121381596 -38218187 + RMER10A LTR ERVL 18 415 -27 8 1511 306 0 0 0 chr3 121381850 121381884 -38217899 + (TTAG)n Simple_repeat Simple_repeat 3 36 0 8 1511 285 285 81 55 chr3 121382382 121382624 -38217159 - MIRb SINE MIR -8 260 7 8 1511 2439 201 64 29 chr3 121383641 121384189 -38215594 + Lx5 LINE L1 6484 7050 0 8 1511 21 57 0 0 chr3 121385227 121385262 -38214521 + AT_rich Low_complexity Low_complexity 1 35 0 8 1511 647 241 165 42 chr3 121385856 121386187 -38213596 - MLT1K LTR MaLR -9 601 204 8 1511 50 31 0 0 chr3 121386275 121386339 -38213444 + AT_rich Low_complexity Low_complexity 1 64 0 8 1511 208 188 31 0 chr3 121386655 121386719 -38213064 + C-rich Low_complexity Low_complexity 3 68 0 8 1511 510 266 102 0 chr3 121386721 121386849 -38212934 - MLT1B LTR MaLR -41 349 209 8 1511 300 191 11 22 chr3 121386962 121387053 -38212730 + (TATATG)n Simple_repeat Simple_repeat 6 95 0 8 1511 202 178 0 43 chr3 121387053 121387100 -38212683 + (CATATA)n Simple_repeat Simple_repeat 1 45 0 8 1511 196 319 0 27 chr3 121387930 121388004 -38211779 + L2b LINE L2 3251 3322 -53 8 1511 665 232 39 21 chr3 121388614 121388786 -38210997 + ID_B1 SINE B4 9 180 -112 8 1511 182 326 109 20 chr3 121390831 121390978 -38208805 + L4 LINE RTE 1207 1366 -663 8 1511 252 351 40 96 chr3 121391118 121391367 -38208416 + L2a LINE L2 2979 3213 -213 8 1511 2440 78 3 6 chr3 121391420 121391742 -38208041 + ORR1A2 LTR MaLR 6 326 -1 8 1511 982 229 30 0 chr3 121393047 121393248 -38206535 + B3 SINE B2 5 211 -5 8 1511 337 204 69 0 chr3 121393251 121393336 -38206447 + B4 SINE B4 4 95 -70 8 1511 460 193 18 0 chr3 121393336 121393445 -38206338 + GA-rich Low_complexity Low_complexity 1 111 0 8 1511 955 229 9 47 chr3 121393451 121393662 -38206121 + B4 SINE B4 81 283 -9 8 1511 183 338 44 0 chr3 121394105 121394173 -38205610 - MIRc SINE MIR -164 104 34 8 1511 664 240 118 17 chr3 121394323 121394501 -38205282 + B3A SINE B2 1 196 -2 8 1511 250 115 19 19 chr3 121394818 121394871 -38204912 + (TA)n Simple_repeat Simple_repeat 1 53 0 8 1511 331 292 0 0 chr3 121394936 121395008 -38204775 + PB1D10 SINE Alu 29 100 -17 8 1511 267 114 0 0 chr3 121397240 121397284 -38202499 + (TA)n Simple_repeat Simple_repeat 2 45 0 8 1511 9916 28 1 0 chr3 121397284 121399131 -38200652 - L1Md_F3 LINE L1 -23 6561 4712 8 1511 793 116 23 6 chr3 121399367 121399541 -38200242 + (TC)n Simple_repeat Simple_repeat 1 177 0 8 1511 416 308 100 6 chr3 121400251 121400421 -38199362 + LTR78 LTR ERV1 992 1177 -127 8 1511 402 308 211 18 chr3 121401588 121401816 -38197967 - LTR16A LTR ERVL -4 447 176 8 1511 261 353 56 28 chr3 121402951 121403094 -38196689 + MIRb SINE MIR 54 200 -68 8 1511 501 202 165 0 chr3 121404466 121404575 -38195208 - RSINE1 SINE B4 -35 130 4 8 1511 282 160 0 0 chr3 121404681 121404731 -38195052 + CT-rich Low_complexity Low_complexity 3 52 0 8 1511 1013 220 30 5 chr3 121404741 121404942 -38194841 - B3 SINE B2 -2 214 9 8 1511 225 0 0 0 chr3 121405182 121405207 -38194576 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 8 1511 184 264 107 98 chr3 121405350 121405472 -38194311 - MIRm SINE MIR -115 161 39 8 1511 263 118 58 23 chr3 121405711 121405798 -38193985 + GA-rich Low_complexity Low_complexity 1 90 0 8 1511 252 264 39 47 chr3 121406875 121407002 -38192781 - L1ME3A LINE L1 -258 5915 5790 8 1511 1621 41 0 20 chr3 121407249 121407446 -38192337 - B2_Mm1t SINE B2 0 193 1 8 1511 226 340 44 70 chr3 121407910 121407963 -38191820 + MT2B2 LTR ERVL 110 158 -426 8 1511 387 272 54 39 chr3 121407963 121408110 -38191673 + B1F SINE Alu 1 149 0 8 1511 756 33 0 0 chr3 121408164 121408255 -38191528 + (TG)n Simple_repeat Simple_repeat 1 91 0 8 1511 382 82 81 20 chr3 121408257 121408356 -38191427 + (CAGAGA)n Simple_repeat Simple_repeat 4 108 0 8 1511 549 30 0 0 chr3 121408396 121408463 -38191320 + (GA)n Simple_repeat Simple_repeat 2 68 0 8 1511 347 302 101 6 chr3 121409109 121409267 -38190516 - MIRc SINE MIR -75 193 14 8 1511 231 320 126 44 chr3 121409967 121410150 -38189633 - MIR3 SINE MIR 0 208 11 8 1511 634 279 115 27 chr3 121410304 121410565 -38189218 + ORR1E LTR MaLR 67 350 -9 8 1511 21 36 0 0 chr3 121410566 121410594 -38189189 + AT_rich Low_complexity Low_complexity 1 28 0 8 1511 22 35 0 0 chr3 121410630 121410659 -38189124 + AT_rich Low_complexity Low_complexity 1 29 0 8 1511 670 176 134 2 chr3 121410740 121410907 -38188876 + B3 SINE B2 2 198 0 8 1511 319 328 81 16 chr3 121411200 121411324 -38188459 - L2a LINE L2 -2 3424 3293 8 1511 189 0 0 0 chr3 121411339 121411360 -38188423 + (TTTC)n Simple_repeat Simple_repeat 4 24 0 8 1511 638 269 0 0 chr3 121411421 121411555 -38188228 + ID_B1 SINE B4 90 223 -1 8 1511 378 0 0 0 chr3 121411699 121411741 -38188042 + (TG)n Simple_repeat Simple_repeat 2 43 0 8 1511 236 373 57 41 chr3 121412216 121412339 -38187444 - MIRb SINE MIR -125 143 19 8 1511 727 248 54 15 chr3 121412683 121412888 -38186895 + MER2 DNA MER2_type 86 298 -47 8 1511 381 296 31 31 chr3 121413118 121413247 -38186536 - LTR33A LTR ERVL -334 186 58 8 1511 328 212 28 75 chr3 121413408 121413515 -38186268 + MTEb LTR MaLR 278 379 0 8 1511 225 280 25 123 chr3 121414201 121414323 -38185460 - L2c LINE L2 -1 3386 3277 8 1511 21 0 0 0 chr3 121414783 121414804 -38184979 + AT_rich Low_complexity Low_complexity 1 21 0 8 1511 329 0 0 24 chr3 121415897 121415939 -38183844 + (TTG)n Simple_repeat Simple_repeat 2 42 0 8 1511 432 0 0 0 chr3 121417381 121417429 -38182354 + (CA)n Simple_repeat Simple_repeat 2 49 0 8 1511 454 241 93 66 chr3 121418399 121418550 -38181233 + B3 SINE B2 1 155 -61 8 1511 495 0 0 0 chr3 121418574 121418629 -38181154 + (CA)n Simple_repeat Simple_repeat 2 56 0 8 1511 297 75 0 0 chr3 121419375 121419415 -38180368 + (TTTA)n Simple_repeat Simple_repeat 2 41 0 8 1511 1149 82 0 25 chr3 121419415 121419577 -38180206 - B2_Mm2 SINE B2 -37 158 1 8 1511 367 309 82 50 chr3 121419640 121419853 -38179930 + MIR SINE MIR 2 207 -61 8 1511 252 258 14 43 chr3 121420123 121420192 -38179591 + RMER15 LTR ERVL 1 67 -508 8 1511 495 301 113 12 chr3 121420192 121420360 -38179423 - B3A SINE B2 -13 185 1 8 1511 1454 249 19 33 chr3 121420381 121420796 -38178987 + RMER15 LTR ERVL 45 574 -1 8 1511 1210 249 24 84 chr3 121421188 121421569 -38178214 + ORR1E LTR MaLR 2 359 0 8 1511 932 267 52 52 chr3 121422403 121422691 -38177092 + MLT1A0 LTR MaLR 1 288 -77 8 1511 245 308 0 0 chr3 121422713 121422778 -38177005 + CT-rich Low_complexity Low_complexity 3 67 0 8 1511 188 328 107 46 chr3 121423065 121423196 -38176587 + L2c LINE L2 3241 3379 -8 8 1511 195 129 0 0 chr3 121423251 121423282 -38176501 + (T)n Simple_repeat Simple_repeat 1 31 0 8 1511 537 129 0 56 chr3 121423304 121423394 -38176389 - B1_Mus2 SINE Alu -1 146 62 8 1511 778 182 29 0 chr3 121423521 121423658 -38176125 + B1_Mur1 SINE Alu 1 141 -8 8 1511 22 0 0 0 chr3 121424068 121424090 -38175693 + AT_rich Low_complexity Low_complexity 1 22 0 8 1511 443 63 0 16 chr3 121425256 121425320 -38174463 + (GGAA)n Simple_repeat Simple_repeat 3 65 0 8 1511 947 147 7 0 chr3 121425327 121425477 -38174306 + URR1B DNA MER1_type 69 219 -6 8 1511 282 56 0 0 chr3 121427707 121427743 -38172040 + (CA)n Simple_repeat Simple_repeat 2 37 0 8 1511 360 244 22 22 chr3 121428317 121428409 -38171374 + ID_B1 SINE B4 128 219 -5 8 1511 379 0 0 38 chr3 121428414 121428467 -38171316 + (CATA)n Simple_repeat Simple_repeat 2 52 0 8 1511 189 0 0 0 chr3 121429219 121429240 -38170543 + (TG)n Simple_repeat Simple_repeat 2 22 0 8 1511 452 212 83 132 chr3 121429337 121429565 -38170218 + ID_B1 SINE B4 3 219 -5 8 1511 1230 49 0 0 chr3 121431090 121431233 -38168550 + B1_Mus1 SINE Alu 1 143 -5 8 1511 222 37 0 0 chr3 121431237 121431264 -38168519 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 8 1511 411 56 0 0 chr3 121432035 121432089 -38167694 + (TAAAA)n Simple_repeat Simple_repeat 2 55 0 8 1511 432 0 0 0 chr3 121432566 121432614 -38167169 + (TC)n Simple_repeat Simple_repeat 1 48 0 9 1511 387 0 0 0 chr3 121432614 121432656 -38167127 + (CA)n Simple_repeat Simple_repeat 1 43 0 9 1511 285 29 0 0 chr3 121433048 121433082 -38166701 + (TC)n Simple_repeat Simple_repeat 2 35 0 9 1511 219 69 0 0 chr3 121433082 121433110 -38166673 + (TG)n Simple_repeat Simple_repeat 2 30 0 9 1511 205 138 0 0 chr3 121433114 121433143 -38166640 + (TTCC)n Simple_repeat Simple_repeat 1 29 0 9 1511 204 67 0 0 chr3 121433544 121433574 -38166209 + (CA)n Simple_repeat Simple_repeat 2 31 0 9 1511 388 202 107 27 chr3 121433797 121433909 -38165874 + B3 SINE B2 92 212 -4 9 1511 568 273 179 9 chr3 121434006 121434235 -38165548 + MER33 DNA MER1_type 7 274 -50 9 1511 318 350 0 0 chr3 121434914 121435014 -38164769 + (TG)n Simple_repeat Simple_repeat 1 100 0 9 1511 365 213 26 13 chr3 121435014 121435090 -38164693 - ID4_ SINE ID -6 77 1 9 1511 396 0 0 0 chr3 121435856 121435900 -38163883 + (TG)n Simple_repeat Simple_repeat 1 44 0 9 1511 265 273 62 26 chr3 121436017 121436103 -38163680 + L1MA4A LINE L1 5852 5940 -363 9 1511 188 61 0 57 chr3 121436103 121436138 -38163645 + (TATG)n Simple_repeat Simple_repeat 3 35 0 9 1511 265 292 73 33 chr3 121436138 121436216 -38163567 + L1MA4A LINE L1 5941 6022 -278 9 1511 204 97 0 0 chr3 121436981 121437012 -38162771 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 9 1511 26 30 0 0 chr3 121437912 121437945 -38161838 + AT_rich Low_complexity Low_complexity 1 33 0 9 1511 299 331 72 36 chr3 121438023 121438161 -38161622 - MLT1I LTR MaLR -27 384 242 9 1511 495 87 0 0 chr3 121438190 121438259 -38161524 + (CA)n Simple_repeat Simple_repeat 2 70 0 9 1511 1155 61 0 13 chr3 121438345 121438494 -38161289 - B1_Mus2 SINE Alu 0 147 1 9 1511 246 153 0 124 chr3 121438538 121438635 -38161148 - Lx9 LINE L1 -22 7622 7538 9 1511 860 179 45 34 chr3 121440265 121440444 -38159339 + ORR1D1 LTR MaLR 1 181 -193 9 1511 372 133 0 0 chr3 121440444 121440504 -38159279 + (TC)n Simple_repeat Simple_repeat 1 60 0 9 1511 377 308 117 68 chr3 121440556 121440999 -38158784 + L2 LINE L2 2294 2758 -661 9 1511 439 278 44 56 chr3 121441165 121441246 -38158537 - RMER15 LTR ERVL -15 560 482 9 1511 2447 137 21 38 chr3 121441246 121441672 -38158111 + MTC LTR MaLR 3 421 0 9 1511 439 278 44 56 chr3 121441672 121441750 -38158033 - RMER15 LTR ERVL -94 481 403 9 1511 4154 118 68 23 chr3 121443856 121444517 -38155266 - RLTR17 LTR ERVK 0 692 2 9 1511 207 0 0 0 chr3 121444948 121444971 -38154812 + (TTTA)n Simple_repeat Simple_repeat 4 26 0 9 1511 1149 60 27 0 chr3 121444972 121445122 -38154661 - B2_Mm2 SINE B2 -41 154 1 9 1511 21 0 0 0 chr3 121445730 121445751 -38154032 + AT_rich Low_complexity Low_complexity 1 21 0 9 1511 5636 42 0 0 chr3 121445854 121446528 -38153255 + L1Md_T LINE L1 5909 6582 0 9 1511 182 37 0 36 chr3 121446680 121446708 -38153075 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 9 1511 397 403 37 0 chr3 121446785 121446976 -38152807 - B4 SINE B4 -93 199 2 9 1511 680 291 118 4 chr3 121447008 121447270 -38152513 - B4A SINE B4 0 292 1 9 1511 382 248 250 20 chr3 121447282 121447430 -38152353 - B3A SINE B2 -14 184 3 9 1511 256 164 35 35 chr3 121447672 121447729 -38152054 - MTC LTR MaLR -24 372 316 9 1511 908 204 25 121 chr3 121447729 121448085 -38151698 + RLTRETN_Mm LTR ERVK 1 322 0 9 1511 6323 106 14 84 chr3 121448099 121449073 -38150710 + MMETn-int LTR ERVK 10 901 -3943 9 1511 4374 8 0 0 chr3 121449073 121449555 -38150228 - LTRIS_Mm LTR ERV1 0 482 1 9 1511 6323 106 14 84 chr3 121449555 121449785 -38149998 + MMETn-int LTR ERVK 902 1130 -3714 9 1511 2743 203 78 115 chr3 121449808 121451108 -38148675 + ETnERV2-int LTR ERVK 2628 3880 -3526 9 1511 3461 41 87 2 chr3 121451110 121451548 -38148235 + IAPLTR2_Mm LTR ERVK 1 475 0 9 1511 897 110 82 60 chr3 121451549 121451732 -38148051 + IAPEz-int LTR ERVK 9 195 -6286 9 1511 248 302 0 0 chr3 121451732 121451785 -38147998 + RLTR27 LTR ERVK 223 275 -34 9 1511 878 51 8 0 chr3 121451785 121451902 -38147881 + IAPEz-int LTR ERVK 168 285 -6196 9 1511 9994 64 48 33 chr3 121451902 121453370 -38146413 + IAPEz-int LTR ERVK 211 1700 -4781 9 1511 6074 58 16 13 chr3 121453363 121454190 -38145593 + IAPEz-int LTR ERVK 5651 6479 -2 9 1511 3532 39 77 2 chr3 121454192 121454634 -38145149 + IAPLTR2_Mm LTR ERVK 1 475 0 9 1511 5355 149 19 22 chr3 121454634 121455890 -38143893 + MMETn-int LTR ERVK 2356 3402 -2004 9 1511 6363 135 11 3 chr3 121455996 121456965 -38142818 + ETnERV2-int LTR ERVK 6227 7203 -203 9 1511 312 235 338 13 chr3 121456967 121457256 -38142527 + RLTR13D6 LTR ERVK 155 537 -365 9 1511 424 82 25 76 chr3 121457256 121457335 -38142448 + ETnERV2-int LTR ERVK 7329 7403 -3 9 1511 962 197 34 129 chr3 121457337 121457693 -38142090 + RLTRETN_Mm LTR ERVK 1 322 0 9 1511 1592 158 45 134 chr3 121457693 121457975 -38141808 - MTC LTR MaLR -75 346 98 9 1511 891 105 14 0 chr3 121457975 121458118 -38141665 - Lx4A LINE L1 -1 7057 6913 9 1511 1592 158 45 134 chr3 121458118 121458215 -38141568 - MTC LTR MaLR -324 97 1 9 1511 310 290 135 16 chr3 121458611 121458737 -38141046 - MLT1G3 LTR MaLR -453 142 2 9 1511 394 264 124 8 chr3 121458807 121459068 -38140715 + L1MA6 LINE L1 5718 6008 -292 9 1511 303 308 68 20 chr3 121459168 121459314 -38140469 + L1M5 LINE L1 4331 4483 -1663 9 1511 417 230 0 0 chr3 121459976 121460076 -38139707 + (TA)n Simple_repeat Simple_repeat 1 100 0 9 1511 442 185 52 44 chr3 121460550 121460662 -38139121 + PB1D9 SINE Alu 10 114 -36 9 1511 216 0 0 0 chr3 121460662 121460686 -38139097 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 9 1511 360 226 93 108 chr3 121460686 121460712 -38139071 + B1_Mur4 SINE Alu 115 147 -3 9 1511 1233 113 0 58 chr3 121460805 121461011 -38138772 + B2_Mm2 SINE B2 2 195 0 9 1511 530 137 9 56 chr3 121461605 121461713 -38138070 + PB1D9 SINE Alu 18 120 0 9 1511 206 192 19 0 chr3 121463675 121463727 -38136056 + GA-rich Low_complexity Low_complexity 4 56 0 9 1511 246 324 47 61 chr3 121464689 121464837 -38134946 - MER46C DNA MER2_type -155 183 38 9 1511 384 331 16 57 chr3 121464892 121464921 -38134862 + MER20 DNA MER1_type 1 27 -192 9 1511 635 89 52 0 chr3 121464921 121465056 -38134727 + (TA)n Simple_repeat Simple_repeat 1 142 0 9 1511 384 331 16 57 chr3 121465056 121465218 -38134565 + MER20 DNA MER1_type 28 183 -36 9 1511 493 67 67 0 chr3 121465342 121465431 -38134352 - Lx LINE L1 -5 6649 6555 9 1511 878 212 91 0 chr3 121465457 121465655 -38134128 - B3 SINE B2 0 216 1 9 1511 426 237 99 0 chr3 121466106 121466237 -38133546 + RSINE1 SINE B4 3 146 -19 9 1511 295 250 42 0 chr3 121466697 121466769 -38133014 - MER5A1 DNA MER1_type -91 75 1 9 1511 306 180 0 0 chr3 121466770 121466831 -38132952 + (TG)n Simple_repeat Simple_repeat 1 61 0 9 1511 210 37 0 0 chr3 121467403 121467430 -38132353 + (TTG)n Simple_repeat Simple_repeat 2 28 0 9 1511 1033 79 139 0 chr3 121467560 121467725 -38132058 - B2_Mm2 SINE B2 -6 189 2 9 1511 23 33 0 0 chr3 121468181 121468211 -38131572 + AT_rich Low_complexity Low_complexity 1 30 0 9 1511 406 264 28 19 chr3 121469303 121469411 -38130372 - PB1D7 SINE Alu -9 111 3 9 1511 522 0 0 0 chr3 121469789 121469847 -38129936 + (TG)n Simple_repeat Simple_repeat 2 59 0 9 1511 200 306 146 30 chr3 121469969 121470134 -38129649 + MIR SINE MIR 85 268 0 9 1511 978 247 71 20 chr3 121470215 121470467 -38129316 + B4A SINE B4 1 265 -27 9 1511 393 311 19 0 chr3 121470464 121470567 -38129216 - B3 SINE B2 -108 108 4 9 1511 924 252 100 6 chr3 121470567 121470824 -38128959 + MTD LTR MaLR 111 389 -30 9 1511 280 275 10 21 chr3 121470824 121470920 -38128863 + MTD-int LTR MaLR 1 94 -1164 9 1511 32 0 0 0 chr3 121472519 121472551 -38127232 + AT_rich Low_complexity Low_complexity 1 32 0 9 1511 500 68 0 14 chr3 121474805 121474879 -38124904 + (TG)n Simple_repeat Simple_repeat 2 74 0 9 1511 468 224 173 16 chr3 121474880 121475007 -38124776 - B3 SINE B2 -66 150 4 9 1511 565 247 101 20 chr3 121475316 121475622 -38124161 + L1M2 LINE L1 5263 5593 -719 9 1511 222 105 0 0 chr3 121475691 121475729 -38124054 + (TCCC)n Simple_repeat Simple_repeat 4 41 0 9 1511 887 228 10 15 chr3 121475846 121476042 -38123741 + B3A SINE B2 4 198 0 9 1511 405 0 0 0 chr3 121476703 121476748 -38123035 + (CA)n Simple_repeat Simple_repeat 2 46 0 9 1511 236 53 0 26 chr3 121478031 121478070 -38121713 + (CAAAA)n Simple_repeat Simple_repeat 2 39 0 9 1511 181 219 0 0 chr3 121479274 121479306 -38120477 + L2a LINE L2 3299 3330 -96 9 1511 305 258 88 29 chr3 121480091 121480227 -38119556 + RSINE1 SINE B4 3 146 -19 9 1511 350 183 241 12 chr3 121480886 121480969 -38118814 - B2_Mm2 SINE B2 -93 102 1 9 1511 227 273 0 0 chr3 121481094 121481160 -38118623 + RSINE1 SINE B4 43 108 -57 9 1511 378 237 92 0 chr3 121481202 121481278 -38118505 + PB1D10 SINE Alu 15 97 -20 9 1511 222 219 0 0 chr3 121483804 121483845 -38115938 + (CATATA)n Simple_repeat Simple_repeat 6 46 0 9 1511 1158 48 14 0 chr3 121483947 121484092 -38115691 - B1_Mus2 SINE Alu 0 147 1 9 1511 26 30 0 0 chr3 121484228 121484261 -38115522 + AT_rich Low_complexity Low_complexity 1 33 0 9 1511 29 28 0 0 chr3 121484474 121484510 -38115273 + AT_rich Low_complexity Low_complexity 1 36 0 9 1511 544 234 130 7 chr3 121484664 121484810 -38114973 + RSINE1 SINE B4 2 165 0 9 1511 689 211 35 21 chr3 121485591 121485724 -38114059 + B1_Mur4 SINE Alu 2 139 -11 9 1511 189 0 0 0 chr3 121485724 121485745 -38114038 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 9 1511 689 211 35 21 chr3 121485745 121485756 -38114027 + B1_Mur4 SINE Alu 140 148 -2 9 1511 26 30 0 0 chr3 121485770 121485803 -38113980 + AT_rich Low_complexity Low_complexity 1 33 0 9 1511 22 0 0 0 chr3 121485814 121485836 -38113947 + AT_rich Low_complexity Low_complexity 1 22 0 9 1511 1133 102 0 0 chr3 121485905 121486062 -38113721 + B2_Mm2 SINE B2 1 157 -38 9 1511 240 224 68 17 chr3 121486199 121486258 -38113525 + RSINE1 SINE B4 2 63 -102 9 1511 198 143 0 0 chr3 121486495 121486530 -38113253 + (CA)n Simple_repeat Simple_repeat 2 36 0 9 1511 23 54 0 0 chr3 121486761 121486798 -38112985 + AT_rich Low_complexity Low_complexity 1 37 0 9 1511 1597 27 27 0 chr3 121488247 121488435 -38111348 - B2_Mm1t SINE B2 0 193 1 9 1511 194 174 22 0 chr3 121488592 121488638 -38111145 + GA-rich Low_complexity Low_complexity 3 49 0 9 1511 281 292 51 20 chr3 121489406 121489504 -38110279 - MER58B DNA MER1_type -20 321 221 9 1511 689 174 60 8 chr3 121489551 121489684 -38110099 + B1_Mur1 SINE Alu 10 149 0 9 1511 845 188 156 0 chr3 121489932 121490118 -38109665 + B3 SINE B2 2 216 0 9 1511 203 164 32 16 chr3 121490265 121490327 -38109456 + (TA)n Simple_repeat Simple_repeat 2 64 0 9 1511 276 181 66 53 chr3 121490430 121490506 -38109277 + MER103 DNA DNA 14 90 -76 1 1511 23 0 0 0 chr3 121490583 121490606 -38109177 + AT_rich Low_complexity Low_complexity 1 23 0 1 1511 221 175 0 0 chr3 121490732 121490772 -38109011 + A-rich Low_complexity Low_complexity 1 40 0 1 1511 441 273 9 26 chr3 121491635 121491748 -38108035 - PB1D10 SINE Alu 0 117 7 1 1511 299 248 185 15 chr3 121492748 121492883 -38106900 + MER5B DNA MER1_type 7 164 -14 1 1511 1181 99 19 0 chr3 121493084 121493245 -38106538 + B2_Mm2 SINE B2 2 165 -30 1 1511 843 39 0 0 chr3 121493247 121493350 -38106433 + (GAAA)n Simple_repeat Simple_repeat 1 103 0 1 1511 249 329 61 49 chr3 121494346 121494509 -38105274 + L2b LINE L2 3206 3370 -5 1 1511 207 0 0 0 chr3 121494554 121494577 -38105206 + (GTTTG)n Simple_repeat Simple_repeat 2 24 0 1 1511 1698 11 0 0 chr3 121495895 121496082 -38103701 + B2_Mm1a SINE B2 2 188 -5 1 1511 1190 85 0 6 chr3 121496082 121496248 -38103535 + B2_Mm2 SINE B2 29 193 -2 1 1511 962 116 20 7 chr3 121496699 121496846 -38102937 + B1_Mur4 SINE Alu 2 150 0 1 1511 1048 93 0 18 chr3 121496846 121497011 -38102772 + (GGGA)n Simple_repeat Simple_repeat 4 165 0 1 1511 611 155 8 94 chr3 121497724 121497852 -38101931 + PB1D9 SINE Alu 2 118 -2 1 1511 434 220 135 25 chr3 121498280 121498500 -38101283 + L1MB7 LINE L1 5778 6032 -152 1 1511 237 65 0 0 chr3 121498921 121498952 -38100831 + (TTTTC)n Simple_repeat Simple_repeat 4 34 0 1 1511 212 270 15 45 chr3 121498974 121499040 -38100743 + B4A SINE B4 82 145 -147 1 1511 363 206 40 40 chr3 121498992 121499093 -38100690 + PB1D10 SINE Alu 12 112 -5 1 1511 1456 69 16 0 chr3 121499550 121499738 -38100045 + B2_Mm2 SINE B2 2 192 -3 1 1511 247 146 42 0 chr3 121499789 121499837 -38099946 - MER46C DNA MER2_type -14 324 275 1 1511 2781 139 63 48 chr3 121500200 121500720 -38099063 + RLTR11A LTR ERVK 1 528 0 1 1511 246 325 44 0 chr3 121500848 121500962 -38098821 - MTEa LTR MaLR -260 119 1 2 1511 252 263 0 0 chr3 121501418 121501475 -38098308 + ORR1D1 LTR MaLR 1 57 -313 3 1511 258 200 0 0 chr3 121501476 121501526 -38098257 + ORR1D1 LTR MaLR 322 371 -3 3 1511 931 158 7 7 chr3 121501919 121502066 -38097717 - B1_Mur4 SINE Alu -1 149 3 4 1511 878 199 33 6 chr3 121502094 121502276 -38097507 + B3 SINE B2 1 187 -29 5 1511 1049 70 0 0 chr3 121502285 121502427 -38097356 + B1_Mm SINE Alu 6 147 0 6 1511 265 231 89 24 chr3 121502701 121502826 -38096957 + L1M2 LINE L1 5294 5440 -860 7 1511 461 305 52 26 chr3 121502826 121503018 -38096765 + B3A SINE B2 2 198 0 8 1511 1046 101 133 0 chr3 121503040 121503198 -38096585 + B2_Mm1t SINE B2 1 179 -14 9 1511 759 277 58 19 chr3 121503214 121503472 -38096311 + L1M2 LINE L1 5434 5701 -611 7 1512 233 250 0 0 chr3 121503893 121503953 -38095830 + L1M5 LINE L1 3374 3433 -2713 1 1512 228 203 44 122 chr3 121504534 121504549 -38095234 + MT2B2 LTR ERVL 159 166 -418 1 1512 336 294 94 70 chr3 121504549 121504677 -38095106 + PB1D10 SINE Alu 1 131 -18 1 1512 180 200 0 143 chr3 121505943 121506013 -38093770 - L2c LINE L2 -79 3308 3249 1 1512 340 333 97 31 chr3 121506279 121506505 -38093278 + MIR SINE MIR 15 255 -7 1 1512 969 195 82 0 chr3 121507383 121507578 -38092205 - B3 SINE B2 -5 211 1 1 1512 22 0 0 0 chr3 121507578 121507600 -38092183 + AT_rich Low_complexity Low_complexity 1 22 0 1 1512 31 0 0 0 chr3 121507651 121507682 -38092101 + AT_rich Low_complexity Low_complexity 1 31 0 1 1512 578 213 101 24 chr3 121507742 121507910 -38091873 + B3A SINE B2 2 182 -16 1 1512 883 222 40 0 chr3 121508158 121508356 -38091427 - B3 SINE B2 -10 206 1 1 1512 362 293 127 17 chr3 121509751 121509869 -38089914 + ID_B1 SINE B4 86 216 -8 2 1512 21 0 0 0 chr3 121510143 121510164 -38089619 + AT_rich Low_complexity Low_complexity 1 21 0 2 1512 616 233 45 0 chr3 121510165 121510298 -38089485 + ID_B1 SINE B4 79 217 -7 2 1512 258 118 56 56 chr3 121510254 121510308 -38089475 + PB1D10 SINE Alu 64 117 0 2 1512 184 378 77 0 chr3 121511294 121511437 -38088346 + L3 LINE CR1 3867 4020 -469 2 1512 188 227 235 49 chr3 121511681 121511783 -38088000 - MIRb SINE MIR -34 234 114 2 1512 483 63 0 0 chr3 121511862 121511925 -38087858 + (TTAGGG)n Simple_repeat Simple_repeat 6 68 0 2 1512 207 0 0 0 chr3 121512509 121512532 -38087251 + (TTAGG)n Simple_repeat Simple_repeat 1 23 0 2 1512 467 319 88 41 chr3 121512632 121512975 -38086808 - L2a LINE L2 -40 3386 3028 2 1512 303 235 14 29 chr3 121514498 121514568 -38085215 + ID4 SINE ID 14 82 -1 2 1512 311 300 93 7 chr3 121515197 121515348 -38084435 + L1ME2z LINE L1 6001 6164 -280 3 1512 207 204 0 0 chr3 121515413 121515457 -38084326 + (TA)n Simple_repeat Simple_repeat 1 44 0 3 1512 396 167 0 0 chr3 121515882 121515954 -38083829 + (TA)n Simple_repeat Simple_repeat 2 73 0 3 1512 428 275 100 7 chr3 121516329 121516479 -38083304 + L1ME3A LINE L1 5999 6162 -11 3 1512 1302 14 0 0 chr3 121516497 121516644 -38083139 - B1_Mus2 SINE Alu 0 147 1 3 1512 29 60 0 0 chr3 121518139 121518189 -38081594 + GC_rich Low_complexity Low_complexity 1 50 0 3 1512 27 0 0 0 chr3 121518211 121518238 -38081545 + GC_rich Low_complexity Low_complexity 1 27 0 3 1512 22 0 0 0 chr3 121518672 121518694 -38081089 + AT_rich Low_complexity Low_complexity 1 22 0 3 1512 1450 69 26 0 chr3 121519707 121519896 -38079887 + B2_Mm2 SINE B2 2 195 0 3 1512 356 138 0 15 chr3 121519902 121519968 -38079815 + GA-rich Low_complexity Low_complexity 4 68 0 3 1512 552 30 0 0 chr3 121520076 121520142 -38079641 + (GGAA)n Simple_repeat Simple_repeat 4 69 0 4 1512 497 314 137 33 chr3 121520346 121520490 -38079293 - LTR65 LTR ERV1 -205 464 297 4 1512 2417 116 81 23 chr3 121520490 121520887 -38078896 - MTC LTR MaLR 0 421 2 4 1512 497 314 137 33 chr3 121520887 121521012 -38078771 - LTR65 LTR ERV1 -373 296 168 4 1512 314 324 161 5 chr3 121521201 121521412 -38078371 + MLT1F1 LTR MaLR 1 244 -304 4 1512 418 282 39 39 chr3 121521460 121521615 -38078168 + MLT1F1 LTR MaLR 398 552 -17 4 1512 1927 136 27 34 chr3 121521765 121522093 -38077690 + ORR1A4 LTR MaLR 1 326 -3 4 1512 183 286 51 13 chr3 121522240 121522318 -38077465 - L2 LINE L2 -640 2779 2699 4 1512 678 203 192 0 chr3 121523561 121523738 -38076045 - ID_B1 SINE B4 -13 211 1 4 1512 365 161 73 12 chr3 121524126 121524208 -38075575 + B2_Mm2 SINE B2 90 176 -19 4 1512 195 42 0 0 chr3 121524208 121524232 -38075551 + (GGA)n Simple_repeat Simple_repeat 2 25 0 4 1512 546 273 46 82 chr3 121524259 121524551 -38075232 + B4A SINE B4 3 282 -10 4 1512 259 190 0 94 chr3 121524551 121524615 -38075168 + RSINE1 SINE B4 108 165 0 5 1512 320 306 16 8 chr3 121524650 121524772 -38075011 + PB1 SINE Alu 3 125 -2 5 1512 323 183 0 123 chr3 121525434 121525515 -38074268 + ID_B1 SINE B4 116 186 -38 5 1512 315 260 0 0 chr3 121525605 121525678 -38074105 - MER58D DNA MER1_type -304 82 10 5 1512 261 0 0 0 chr3 121526029 121526058 -38073725 + (CA)n Simple_repeat Simple_repeat 2 30 0 5 1512 731 200 127 6 chr3 121526089 121526255 -38073528 + B3 SINE B2 4 189 -27 5 1512 2550 80 3 9 chr3 121527090 121527420 -38072363 - ORR1A4 LTR MaLR 0 329 2 5 1512 412 247 10 0 chr3 121527954 121528051 -38071732 + B3 SINE B2 1 98 -118 5 1512 195 42 0 0 chr3 121528330 121528354 -38071429 + (TTC)n Simple_repeat Simple_repeat 2 25 0 5 1512 522 214 268 0 chr3 121528356 121528524 -38071259 - B3 SINE B2 -3 213 1 5 1512 1926 156 134 22 chr3 121528871 121529237 -38070546 + MTB_Mm LTR MaLR 1 407 0 6 1512 183 42 0 0 chr3 121529627 121529651 -38070132 + (GTTTG)n Simple_repeat Simple_repeat 2 25 0 6 1512 1200 48 0 14 chr3 121529658 121529805 -38069978 - B1_Mus2 SINE Alu -1 146 2 6 1512 21 36 0 0 chr3 121529812 121529840 -38069943 + AT_rich Low_complexity Low_complexity 1 28 0 6 1512 1544 156 10 274 chr3 121529947 121530458 -38069325 + ORR1C1 LTR MaLR 1 376 -2 6 1512 495 254 110 32 chr3 121530738 121531019 -38068764 + L1MD3 LINE L1 6334 6636 -1246 6 1512 496 276 55 122 chr3 121531043 121531443 -38068340 + L1MD3 LINE L1 6965 7337 -658 6 1512 325 226 35 23 chr3 121531462 121531548 -38068235 - MTEb LTR MaLR -15 364 278 6 1512 1163 299 95 35 chr3 121531851 121532443 -38067340 + L1MD3 LINE L1 7354 7980 -15 6 1512 536 259 82 0 chr3 121532478 121532613 -38067170 + B1F2 SINE Alu 2 147 -2 6 1512 678 202 18 0 chr3 121532613 121532781 -38067002 + GA-rich Low_complexity Low_complexity 1 171 0 6 1512 23 0 0 0 chr3 121532862 121532885 -38066898 + AT_rich Low_complexity Low_complexity 1 23 0 6 1512 251 340 46 26 chr3 121533597 121533748 -38066035 - MIRc SINE MIR -64 204 51 7 1512 1796 224 57 2 chr3 121533758 121534211 -38065572 + MT2A LTR ERVL 3 480 -53 7 1512 669 181 0 0 chr3 121534218 121534356 -38065427 + (TA)n Simple_repeat Simple_repeat 2 139 0 7 1512 445 282 103 14 chr3 121534445 121534668 -38065115 + RMER20B LTR ERVK 143 385 -242 7 1512 252 175 45 36 chr3 121534782 121534870 -38064913 + MLT2B1 LTR ERVL 477 567 0 7 1512 439 280 16 0 chr3 121535004 121535129 -38064654 - B1F SINE Alu -8 141 15 7 1512 458 359 81 43 chr3 121537249 121537717 -38062066 + LTR33 LTR ERVL 30 515 0 7 1512 450 0 0 0 chr3 121538014 121538064 -38061719 + (TG)n Simple_repeat Simple_repeat 2 51 0 7 1512 654 265 159 0 chr3 121538069 121538314 -38061469 - B4A SINE B4 -8 284 1 7 1512 626 172 59 46 chr3 121538708 121538860 -38060923 - MTD LTR MaLR -14 405 252 7 1512 353 368 25 5 chr3 121539155 121539357 -38060426 + ERVL-B4-int LTR ERVL 2699 2904 -2810 8 1512 840 139 19 0 chr3 121539382 121539540 -38060243 + CT-rich Low_complexity Low_complexity 2 162 0 8 1512 348 24 0 0 chr3 121539540 121539581 -38060202 + (CA)n Simple_repeat Simple_repeat 1 41 0 8 1512 292 378 24 0 chr3 121539581 121539745 -38060038 + ERVL-B4-int LTR ERVL 2910 3077 -2590 8 1512 362 265 21 57 chr3 121539795 121539935 -38059848 + MTD LTR MaLR 6 140 -279 8 1512 2969 257 17 130 chr3 121539935 121540900 -38058883 + RMER1C Other Other 374 1201 -141 8 1512 240 35 0 0 chr3 121540900 121540929 -38058854 + (TTG)n Simple_repeat Simple_repeat 2 30 0 8 1512 2969 255 17 132 chr3 121540929 121541070 -38058713 + RMER1C Other Other 1202 1342 0 8 1512 1037 50 14 0 chr3 121541138 121541279 -38058504 + B1_Mus1 SINE Alu 6 148 0 8 1512 1333 142 23 5 chr3 121541291 121541511 -38058272 + MTD LTR MaLR 196 419 0 8 1512 837 293 20 67 chr3 121541787 121542087 -38057696 - B4 SINE B4 0 292 7 8 1512 1202 228 185 50 chr3 121543555 121543840 -38055943 + RLTR18 LTR ERVK 5 276 -340 8 1512 1100 96 0 14 chr3 121543840 121543988 -38055795 + B1_Mus2 SINE Alu 2 147 0 9 1512 1202 228 185 50 chr3 121543988 121544140 -38055643 + RLTR18 LTR ERVK 277 501 -115 8 1512 301 275 0 0 chr3 121544174 121544243 -38055540 + RLTR18B LTR ERVK 397 465 -47 9 1512 426 119 0 0 chr3 121544243 121544327 -38055456 + (TCCC)n Simple_repeat Simple_repeat 1 84 0 9 1512 237 259 0 0 chr3 121544693 121544747 -38055036 - MTE2b LTR MaLR -6 373 320 9 1512 376 288 51 19 chr3 121544735 121544891 -38054892 - MTE2b LTR MaLR -216 163 3 9 1512 723 307 28 9 chr3 121545627 121545844 -38053939 + B4A SINE B4 68 288 -4 9 1512 332 346 73 48 chr3 121545961 121546274 -38053509 + ERVL-B4-int LTR ERVL 2425 2745 -2969 9 1512 375 220 121 0 chr3 121546376 121546467 -38053316 - MTD LTR MaLR -315 104 3 9 1512 560 364 135 23 chr3 121546486 121546885 -38052898 + LTR16E2 LTR ERVL 64 507 -61 9 1512 232 344 33 0 chr3 121547182 121547272 -38052511 - MIRb SINE MIR -160 108 16 9 1512 502 171 21 28 chr3 121548502 121548646 -38051137 + GA-rich Low_complexity Low_complexity 2 144 0 9 1512 1666 254 33 33 chr3 121549841 121550260 -38049523 + Lx5 LINE L1 6632 7050 0 1 1512 712 185 13 0 chr3 121550552 121550709 -38049074 + GA-rich Low_complexity Low_complexity 3 161 0 1 1512 876 200 0 0 chr3 121551318 121551468 -38048315 + B1_Mur4 SINE Alu 1 150 0 1 1512 22 0 0 0 chr3 121551500 121551522 -38048261 + AT_rich Low_complexity Low_complexity 1 22 0 1 1512 425 291 75 19 chr3 121551660 121551696 -38048087 + ID SINE ID 49 82 -142 1 1512 885 159 28 0 chr3 121551696 121551841 -38047942 + B1_Mur1 SINE Alu 1 149 0 1 1512 425 291 75 19 chr3 121551841 121551965 -38047818 + ID_B1 SINE B4 83 217 -7 1 1512 27 0 0 0 chr3 121552054 121552081 -38047702 + AT_rich Low_complexity Low_complexity 1 27 0 1 1512 1523 233 57 116 chr3 121552490 121553083 -38046700 + RLTR20B3 LTR ERVK 5 562 -15 1 1512 366 107 0 0 chr3 121553194 121553250 -38046533 + (TG)n Simple_repeat Simple_repeat 1 56 0 1 1512 464 196 98 0 chr3 121553287 121553389 -38046394 - RSINE1 SINE B4 -46 119 8 1 1512 661 228 164 0 chr3 121553787 121553976 -38045807 - ID_B1 SINE B4 -3 221 2 1 1512 315 141 0 0 chr3 121554316 121554380 -38045403 + (TG)n Simple_repeat Simple_repeat 1 64 0 1 1512 534 353 26 26 chr3 121554403 121554595 -38045188 - B4A SINE B4 -1 291 100 1 1512 473 184 0 19 chr3 121554595 121554700 -38045083 + CT-rich Low_complexity Low_complexity 2 104 0 1 1512 265 271 22 66 chr3 121554700 121554791 -38044992 - B4A SINE B4 -205 87 1 1 1512 688 258 87 87 chr3 121555417 121555546 -38044237 - L1MB4 LINE L1 0 6180 6056 1 1512 431 216 190 0 chr3 121555546 121555662 -38044121 - B1F1 SINE Alu -11 138 1 1 1512 688 258 87 87 chr3 121555662 121555901 -38043882 - L1MB4 LINE L1 -125 6055 5812 1 1512 532 179 9 9 chr3 121556103 121556210 -38043573 + B3 SINE B2 1 107 -109 1 1512 237 212 60 15 chr3 121556234 121556301 -38043482 - MIRb SINE MIR -88 180 111 1 1512 875 181 0 7 chr3 121556349 121556488 -38043295 - B1_Mus2 SINE Alu -5 142 5 1 1512 505 134 9 179 chr3 121557262 121557420 -38042363 - B2_Mm2 SINE B2 -80 136 2 1 1512 229 214 0 0 chr3 121557562 121557604 -38042179 + L1MA6 LINE L1 6049 6090 -210 1 1512 270 0 0 0 chr3 121557672 121557702 -38042081 + (TC)n Simple_repeat Simple_repeat 1 30 0 1 1512 321 26 0 0 chr3 121557702 121557739 -38042044 + (CA)n Simple_repeat Simple_repeat 1 38 0 1 1512 487 214 0 0 chr3 121557775 121557864 -38041919 + PB1D9 SINE Alu 26 114 -6 1 1512 1510 68 11 0 chr3 121558069 121558260 -38041523 + B2_Mm1a SINE B2 1 193 0 1 1512 519 180 0 0 chr3 121558371 121558482 -38041301 + GA-rich Low_complexity Low_complexity 4 114 0 1 1512 541 103 0 44 chr3 121558814 121558905 -38040878 + ORR1B2 LTR MaLR 1 87 -280 1 1512 741 23 0 0 chr3 121558950 121559037 -38040746 + (GAA)n Simple_repeat Simple_repeat 1 87 0 1 1512 577 200 76 8 chr3 121559107 121559238 -38040545 + B1_Mur1 SINE Alu 10 149 0 1 1512 273 217 339 32 chr3 121559275 121559399 -38040384 + RSINE1 SINE B4 3 164 -1 1 1512 672 259 55 13 chr3 121559430 121559665 -38040118 + L1MD LINE L1 2567 2811 -3335 1 1512 474 277 14 42 chr3 121559685 121559828 -38039955 + B1F SINE Alu 10 148 -1 1 1512 267 103 0 0 chr3 121559915 121559954 -38039829 + (TATATG)n Simple_repeat Simple_repeat 2 40 0 1 1512 255 237 79 0 chr3 121559985 121560061 -38039722 - Lx8 LINE L1 -9 7464 7383 1 1512 1356 65 8 8 chr3 121560102 121560364 -38039419 + (TTTC)n Simple_repeat Simple_repeat 1 262 0 1 1512 409 248 8 19 chr3 121560406 121560505 -38039278 - Lx8 LINE L1 -207 7266 7152 1 1512 588 53 0 0 chr3 121560505 121560581 -38039202 + (TCCC)n Simple_repeat Simple_repeat 1 76 0 1 1512 225 290 99 107 chr3 121560581 121560750 -38039033 - Lx8 LINE L1 -545 7151 6988 1 1512 872 241 132 0 chr3 121562193 121562413 -38037370 + RLTR42-int LTR ERVK 1151 1399 -4123 1 1512 294 159 28 42 chr3 121562582 121562654 -38037129 + RLTR42-int LTR ERVK 896 966 -5171 1 1512 396 0 0 0 chr3 121562671 121562715 -38037068 + (TA)n Simple_repeat Simple_repeat 2 45 0 1 1512 579 170 89 92 chr3 121562715 121562911 -38036872 + RLTR42-int LTR ERVK 1556 1791 -3731 1 1512 2675 40 6 44 chr3 121563062 121563402 -38036381 + IAPLTR2b LTR ERVK 1 327 0 1 1512 1396 81 11 0 chr3 121563780 121563965 -38035818 - B2_Mm1a SINE B2 -5 188 2 1 1512 1394 218 102 140 chr3 121564070 121564987 -38034796 + RLTR42-int LTR ERVK 1870 3019 -3118 1 1512 306 200 0 0 chr3 121565312 121565367 -38034416 + RLTR42-int LTR ERVK 3186 3240 -2897 1 1512 328 241 25 0 chr3 121565679 121565758 -38034025 + RMER1B Other Other 71 151 -915 1 1512 3994 187 81 121 chr3 121566160 121567222 -38032561 + RMER1B Other Other 43 1062 -4 1 1512 314 250 0 48 chr3 121567223 121567307 -38032476 + RMER17C-int LTR ERVK 2417 2496 -742 1 1512 319 186 14 14 chr3 121567503 121567574 -38032209 + RLTR42-int LTR ERVK 3755 3825 -2312 1 1512 301 171 13 79 chr3 121567605 121567681 -38032102 + RLTR42-int LTR ERVK 4039 4109 -2028 1 1512 510 243 99 0 chr3 121568521 121568673 -38031110 + Lx8 LINE L1 6318 6484 -989 1 1512 630 188 141 0 chr3 121568844 121568963 -38030820 + B1_Mus2 SINE Alu 1 137 -10 1 1512 257 0 0 29 chr3 121568963 121568997 -38030786 + (CAAAA)n Simple_repeat Simple_repeat 2 34 0 1 1512 754 157 7 13 chr3 121569052 121569184 -38030599 + CT-rich Low_complexity Low_complexity 25 156 0 1 1512 4307 75 8 17 chr3 121569184 121569782 -38030001 - L1_Mus3 LINE L1 0 6638 6046 1 1512 754 157 7 13 chr3 121569782 121569804 -38029979 + polypyrimidine Low_complexity Low_complexity 3 24 0 1 1512 24 32 0 0 chr3 121570736 121570767 -38029016 + AT_rich Low_complexity Low_complexity 1 31 0 1 1512 284 48 0 23 chr3 121570767 121570810 -38028973 + (TG)n Simple_repeat Simple_repeat 1 42 0 1 1512 550 243 0 106 chr3 121570810 121570980 -38028803 - B3A SINE B2 -44 154 3 1 1512 300 222 16 0 chr3 121571658 121571721 -38028062 + ID4_ SINE ID 1 64 -19 1 1512 416 224 24 0 chr3 121572099 121572184 -38027599 - MTEb LTR MaLR -282 97 11 1 1512 910 141 7 0 chr3 121572203 121572345 -38027438 - B1_Mur4 SINE Alu -1 149 7 1 1512 334 235 46 132 chr3 121572246 121572398 -38027385 - MT2B LTR ERVL -344 257 119 1 1512 814 251 147 23 chr3 121572682 121572988 -38026795 - MER21B LTR ERV1 -22 841 498 1 1512 342 291 41 49 chr3 121573077 121573200 -38026583 - MER21B LTR ERV1 -498 365 244 1 1512 892 300 93 43 chr3 121573516 121574001 -38025782 - HERVL40-int LTR ERVL -952 4578 4070 1 1512 243 88 0 0 chr3 121574110 121574144 -38025639 + (TTTG)n Simple_repeat Simple_repeat 4 37 0 1 1512 239 157 0 19 chr3 121574371 121574423 -38025360 + GA-rich Low_complexity Low_complexity 2 52 0 1 1512 521 238 221 23 chr3 121574437 121574609 -38025174 + ID_B1 SINE B4 10 215 -9 1 1512 266 327 10 0 chr3 121574658 121574759 -38025024 - HERVL40-int LTR ERVL -5378 152 51 1 1512 907 335 33 23 chr3 121574801 121575198 -38024585 - LTR40b LTR ERVL 0 462 62 1 1512 492 279 64 30 chr3 121575204 121575440 -38024343 + L1ME1 LINE L1 5829 6072 -107 1 1512 485 233 92 30 chr3 121575441 121575605 -38024178 - L1MB4 LINE L1 -2 6178 6005 1 1512 186 43 0 0 chr3 121575976 121575999 -38023784 + (CAGA)n Simple_repeat Simple_repeat 4 26 0 1 1512 251 268 0 10 chr3 121576260 121576358 -38023425 + GA-rich Low_complexity Low_complexity 1 97 0 1 1512 995 196 6 0 chr3 121577063 121577236 -38022547 + B3 SINE B2 3 176 -40 1 1512 414 0 0 0 chr3 121577240 121577286 -38022497 + (TAA)n Simple_repeat Simple_repeat 2 47 0 1 1512 438 317 48 6 chr3 121578141 121578306 -38021477 - LTR33 LTR ERVL -300 215 44 1 1512 203 175 16 109 chr3 121579044 121579108 -38020675 + MIRc SINE MIR 130 187 -81 1 1512 235 0 28 28 chr3 121579251 121579287 -38020496 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 1 1512 670 214 208 0 chr3 121579600 121579778 -38020005 + B3 SINE B2 2 216 0 1 1512 722 241 0 40 chr3 121579900 121579937 -38019846 - B3 SINE B2 -24 192 157 1 1512 468 0 0 0 chr3 121579937 121579989 -38019794 + (TTTTA)n Simple_repeat Simple_repeat 5 56 0 1 1512 722 241 0 40 chr3 121579989 121580150 -38019633 - B3 SINE B2 -60 156 2 1 1512 1276 99 22 11 chr3 121580239 121580422 -38019361 + B2_Mm2 SINE B2 1 185 -10 1 1512 284 161 0 16 chr3 121580501 121580564 -38019219 + (TATG)n Simple_repeat Simple_repeat 2 63 0 1 1512 304 251 21 27 chr3 121580619 121580748 -38019035 - MLT1E3 LTR MaLR 0 624 431 1 1512 352 250 186 70 chr3 121581315 121581487 -38018296 - RMER12 LTR ERVK -136 1186 995 1 1512 312 91 0 0 chr3 121581493 121581537 -38018246 + (GAGAA)n Simple_repeat Simple_repeat 5 48 0 1 1512 1422 89 16 0 chr3 121581594 121581784 -38017999 - B2_Mm2 SINE B2 -2 193 1 1 1512 1515 217 59 81 chr3 121581850 121582623 -38017160 - RMER12 LTR ERVK -1101 747 16 1 1512 369 264 18 0 chr3 121583713 121583823 -38015960 - L2a LINE L2 -2 3424 3313 1 1512 633 166 11 31 chr3 121583954 121584218 -38015565 + (CA)n Simple_repeat Simple_repeat 1 258 0 1 1512 239 256 38 38 chr3 121584796 121584954 -38014829 + (TGG)n Simple_repeat Simple_repeat 2 159 0 1 1512 260 262 34 39 chr3 121584976 121585155 -38014628 + (TGG)n Simple_repeat Simple_repeat 2 179 0 1 1512 203 256 23 58 chr3 121585200 121585374 -38014409 + (ATGGTG)n Simple_repeat Simple_repeat 4 171 0 1 1512 316 234 35 35 chr3 121585309 121585482 -38014301 + (TGG)n Simple_repeat Simple_repeat 1 173 0 1 1512 226 233 29 63 chr3 121585416 121585590 -38014193 + (ATGGTG)n Simple_repeat Simple_repeat 4 171 0 1 1512 180 0 0 0 chr3 121587090 121587110 -38012673 + (CA)n Simple_repeat Simple_repeat 2 21 0 1 1512 1400 151 76 43 chr3 121587270 121587547 -38012236 - Lx5 LINE L1 0 7050 6765 1 1512 323 301 67 15 chr3 121587576 121587711 -38012072 + MER20 DNA MER1_type 78 219 0 1 1512 1013 31 0 0 chr3 121587715 121587845 -38011938 + B1_Mus1 SINE Alu 12 141 -7 1 1512 213 65 0 0 chr3 121587850 121587881 -38011902 + (TGAA)n Simple_repeat Simple_repeat 3 33 0 1 1512 300 293 68 41 chr3 121588313 121588459 -38011324 + RSINE1 SINE B4 3 152 -13 1 1512 432 0 0 0 chr3 121589066 121589114 -38010669 + (CA)n Simple_repeat Simple_repeat 2 49 0 1 1512 372 289 46 40 chr3 121589295 121589468 -38010315 - ID_B1 SINE B4 -48 176 3 1 1512 280 340 35 7 chr3 121589613 121589762 -38010021 - MIRb SINE MIR -67 195 39 1 1512 189 0 0 0 chr3 121589884 121589905 -38009878 + (C)n Simple_repeat Simple_repeat 1 21 0 1 1512 930 194 37 65 chr3 121590509 121590724 -38009059 + B3 SINE B2 5 213 -3 1 1512 315 203 0 0 chr3 121591014 121591083 -38008700 + (CA)n Simple_repeat Simple_repeat 2 70 0 1 1512 248 170 0 19 chr3 121591228 121591282 -38008501 + CT-rich Low_complexity Low_complexity 4 56 0 1 1512 802 206 0 0 chr3 121591282 121591428 -38008355 - B1_Mus2 SINE Alu -1 146 1 2 1512 194 0 39 0 chr3 121592696 121592722 -38007061 + (CAAAC)n Simple_repeat Simple_repeat 2 28 0 2 1512 1200 48 0 14 chr3 121592869 121593016 -38006767 - B1_Mus1 SINE Alu -1 147 3 2 1512 513 0 0 0 chr3 121593597 121593654 -38006129 + (CA)n Simple_repeat Simple_repeat 1 57 0 2 1512 211 191 0 0 chr3 121594087 121594129 -38005654 + C-rich Low_complexity Low_complexity 1 42 0 2 1512 205 51 24 49 chr3 121594605 121594646 -38005137 + (CAAAAA)n Simple_repeat Simple_repeat 3 42 0 2 1512 577 340 44 20 chr3 121595159 121595411 -38004372 + B4 SINE B4 16 273 -19 2 1512 208 303 147 54 chr3 121595803 121595932 -38003851 + L4 LINE RTE 1036 1176 -853 2 1512 755 237 20 7 chr3 121596179 121596332 -38003451 - RSINE1 SINE B4 -10 155 1 2 1512 238 360 10 10 chr3 121596333 121596434 -38003349 + L4 LINE RTE 1422 1522 -507 2 1512 183 80 0 0 chr3 121596854 121596879 -38002904 + (CTTTG)n Simple_repeat Simple_repeat 2 26 0 2 1512 410 0 20 0 chr3 121596984 121597034 -38002749 + (TC)n Simple_repeat Simple_repeat 1 51 0 2 1512 1159 57 7 0 chr3 121597133 121597274 -38002509 - B1_Mm SINE Alu -5 142 1 2 1512 544 218 55 0 chr3 121597866 121597976 -38001807 + B1F2 SINE Alu 26 141 -8 2 1512 942 279 106 11 chr3 121597990 121598255 -38001528 + B4A SINE B4 1 290 -2 2 1512 269 219 0 59 chr3 121598295 121598363 -38001420 + G-rich Low_complexity Low_complexity 2 65 0 2 1512 1314 70 41 0 chr3 121598766 121598938 -38000845 - B2_Mm2 SINE B2 -14 181 3 2 1512 21 0 0 0 chr3 121599015 121599036 -38000747 + AT_rich Low_complexity Low_complexity 1 21 0 2 1512 1153 138 153 0 chr3 121599282 121599478 -38000305 + URR1A DNA MER1_type 1 226 0 2 1512 465 297 142 9 chr3 121599627 121599838 -37999945 - ORR1E LTR MaLR -114 245 7 2 1512 603 40 0 0 chr3 121600434 121600508 -37999275 + (GAAA)n Simple_repeat Simple_repeat 3 76 0 2 1512 287 274 0 0 chr3 121600756 121600818 -37998965 + C-rich Low_complexity Low_complexity 1 62 0 2 1512 21 0 0 0 chr3 121601092 121601113 -37998670 + AT_rich Low_complexity Low_complexity 1 21 0 2 1512 229 293 72 72 chr3 121601261 121601386 -37998397 - L2c LINE L2 0 3387 3263 2 1512 322 296 78 11 chr3 121601555 121601746 -37998037 + Charlie18a DNA MER1_type 94 297 -45 2 1512 252 0 0 0 chr3 121601914 121601942 -37997841 + (TTG)n Simple_repeat Simple_repeat 3 30 0 2 1512 958 128 0 45 chr3 121602188 121602344 -37997439 - B1_Mur4 SINE Alu -1 149 1 2 1512 588 74 0 0 chr3 121602397 121602478 -37997305 - B2_Mm2 SINE B2 -113 82 2 2 1512 243 0 0 0 chr3 121603232 121603259 -37996524 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2 1512 234 81 0 0 chr3 121603551 121603588 -37996195 + (A)n Simple_repeat Simple_repeat 1 37 0 2 1512 234 0 0 0 chr3 121603887 121603913 -37995870 + (T)n Simple_repeat Simple_repeat 1 26 0 2 1512 733 278 70 13 chr3 121604138 121604368 -37995415 + MTEb LTR MaLR 2 244 -135 2 1512 535 266 8 46 chr3 121604594 121604724 -37995059 + RSINE1 SINE B4 41 165 0 2 1512 336 211 0 0 chr3 121605232 121605308 -37994475 + (TG)n Simple_repeat Simple_repeat 1 76 0 2 1512 716 268 100 37 chr3 121605312 121605583 -37994200 - B4A SINE B4 -4 288 1 2 1512 416 280 40 55 chr3 121605585 121605785 -37993998 - L1MB3 LINE L1 -296 5887 5691 2 1512 204 40 0 0 chr3 121606139 121606164 -37993619 + (CAAA)n Simple_repeat Simple_repeat 1 25 0 2 1512 1046 195 102 26 chr3 121606978 121607242 -37992541 + Lx4B LINE L1 6771 7054 -4 2 1512 195 42 0 0 chr3 121607828 121607852 -37991931 + (TGGGGG)n Simple_repeat Simple_repeat 4 27 0 2 1512 201 108 0 0 chr3 121608202 121608239 -37991544 + (TG)n Simple_repeat Simple_repeat 2 38 0 2 1512 1013 139 0 6 chr3 121608266 121608440 -37991343 + (GGAGAA)n Simple_repeat Simple_repeat 3 175 0 2 1512 295 235 198 0 chr3 121608442 121608523 -37991260 + Lx8 LINE L1 6640 6736 -737 2 1512 335 191 32 0 chr3 121608772 121608835 -37990948 + Lx8 LINE L1 6742 6806 -667 2 1512 257 169 114 25 chr3 121608844 121608923 -37990860 - Lx5 LINE L1 0 7050 6965 2 1512 1515 289 25 9 chr3 121608923 121609367 -37990416 + Lx8 LINE L1 6810 7260 -213 2 1512 327 25 0 0 chr3 121609500 121609540 -37990243 + (CA)n Simple_repeat Simple_repeat 1 40 0 2 1512 348 147 0 0 chr3 121609540 121609615 -37990168 + (GA)n Simple_repeat Simple_repeat 1 75 0 2 1512 310 340 73 32 chr3 121610074 121610320 -37989463 - LTR16E2 LTR ERVL -97 471 216 2 1512 615 255 0 7 chr3 121612652 121612794 -37986989 + ID_B1 SINE B4 80 220 -4 2 1512 952 179 96 15 chr3 121612831 121613030 -37986753 - B3 SINE B2 0 216 2 2 1512 256 201 0 44 chr3 121613625 121613701 -37986082 + PB1D9 SINE Alu 2 70 -47 2 1512 733 288 24 75 chr3 121613721 121614014 -37985769 + B4 SINE B4 1 278 -14 2 1512 270 0 0 0 chr3 121614026 121614056 -37985727 + (CA)n Simple_repeat Simple_repeat 2 31 0 2 1512 249 306 16 0 chr3 121614068 121614130 -37985653 + BC1_Mm scRNA scRNA 2 64 -88 2 1512 291 54 0 0 chr3 121614131 121614168 -37985615 + (CA)n Simple_repeat Simple_repeat 2 38 0 2 1512 324 0 0 0 chr3 121614170 121614206 -37985577 + (TC)n Simple_repeat Simple_repeat 1 36 0 2 1512 339 130 0 0 chr3 121615465 121615519 -37984264 + (GGA)n Simple_repeat Simple_repeat 2 55 0 2 1512 282 116 0 0 chr3 121615672 121615715 -37984068 + (TGG)n Simple_repeat Simple_repeat 3 45 0 2 1512 634 294 65 57 chr3 121616110 121616463 -37983320 - L1MB3 LINE L1 -34 6149 5794 2 1512 372 311 9 9 chr3 121616794 121616901 -37982882 + PB1D10 SINE Alu 10 116 -1 2 1512 837 216 74 20 chr3 121617073 121617276 -37982507 + B3 SINE B2 3 216 0 2 1512 199 29 86 0 chr3 121618590 121618625 -37981158 + (TTTTG)n Simple_repeat Simple_repeat 2 39 0 2 1512 410 283 41 55 chr3 121618641 121618787 -37980996 - B1F SINE Alu 0 149 6 2 1512 266 0 29 0 chr3 121618825 121618859 -37980924 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 2 1512 1190 50 0 0 chr3 121618862 121619002 -37980781 - B1_Mus1 SINE Alu -7 141 2 2 1512 310 156 31 0 chr3 121619262 121619326 -37980457 - B3 SINE B2 0 216 151 2 1512 261 213 62 0 chr3 121619692 121619770 -37980013 - PB1D7 SINE Alu 0 120 25 2 1512 201 39 0 0 chr3 121619990 121620016 -37979767 + (CA)n Simple_repeat Simple_repeat 1 26 0 2 1512 343 327 12 97 chr3 121620189 121620436 -37979347 + Lx8 LINE L1 7227 7452 -21 2 1512 568 0 14 14 chr3 121621142 121621215 -37978568 + (TG)n Simple_repeat Simple_repeat 2 74 0 2 1512 452 233 39 0 chr3 121621732 121621835 -37977948 - B1_Mur2 SINE Alu -41 108 2 2 1512 259 233 0 14 chr3 121621929 121622003 -37977780 + CT-rich Low_complexity Low_complexity 1 73 0 2 1512 469 365 74 14 chr3 121622873 121623223 -37976560 + MLT1A LTR MaLR 4 374 0 2 1512 361 308 54 0 chr3 121623786 121623916 -37975867 + L3 LINE CR1 3870 4006 -483 2 1512 263 349 140 8 chr3 121624043 121624304 -37975479 - MLT1I LTR MaLR 0 411 116 2 1512 620 288 59 14 chr3 121624638 121624860 -37974923 + B4A SINE B4 3 234 -58 2 1512 308 273 16 106 chr3 121624982 121625105 -37974678 + MT2B LTR ERVL 153 264 -337 2 1512 745 180 0 7 chr3 121625001 121625141 -37974642 + B1_Mus2 SINE Alu 9 147 0 2 1512 219 324 29 14 chr3 121625464 121625533 -37974250 + ID2 SINE ID 1 70 -13 2 1512 207 0 0 0 chr3 121626305 121626328 -37973455 + (A)n Simple_repeat Simple_repeat 1 23 0 2 1512 862 280 78 7 chr3 121626750 121627020 -37972763 - B4 SINE B4 -2 290 2 2 1512 937 130 12 0 chr3 121627137 121627299 -37972484 + (TCC)n Simple_repeat Simple_repeat 2 165 0 2 1512 458 272 87 8 chr3 121627306 121627432 -37972351 - B1F1 SINE Alu -1 148 13 2 1512 882 284 4 18 chr3 121628949 121629175 -37970608 - ID_B1 SINE B4 -1 223 1 2 1512 388 110 14 0 chr3 121629609 121629682 -37970101 - B2_Mm1t SINE B2 -1 192 119 2 1512 1391 75 16 0 chr3 121629695 121629883 -37969900 - B2_Mm1t SINE B2 -1 192 2 2 1512 201 147 0 0 chr3 121631483 121631517 -37968266 + (TTGG)n Simple_repeat Simple_repeat 2 35 0 2 1512 186 43 0 0 chr3 121631545 121631568 -37968215 + (TTTG)n Simple_repeat Simple_repeat 3 25 0 2 1512 2346 174 165 16 chr3 121631664 121632161 -37967622 + RMER15 LTR ERVL 4 574 -1 2 1512 225 0 0 0 chr3 121632276 121632301 -37967482 + (TG)n Simple_repeat Simple_repeat 1 25 0 2 1512 190 95 23 23 chr3 121632801 121632844 -37966939 + (CAAAAA)n Simple_repeat Simple_repeat 2 44 0 2 1512 26 0 0 0 chr3 121633154 121633180 -37966603 + AT_rich Low_complexity Low_complexity 1 26 0 2 1512 279 0 0 0 chr3 121633594 121633625 -37966158 + (TG)n Simple_repeat Simple_repeat 2 32 0 2 1512 650 250 7 19 chr3 121633644 121633799 -37965984 - B3A SINE B2 -45 153 1 2 1512 271 282 74 37 chr3 121633957 121634027 -37965756 + RSINE1 SINE B4 53 127 -38 2 1512 315 0 0 0 chr3 121634027 121634062 -37965721 + (CA)n Simple_repeat Simple_repeat 2 36 0 2 1512 279 0 0 0 chr3 121634062 121634092 -37965691 + (GA)n Simple_repeat Simple_repeat 2 32 0 2 23 190 283 0 54 chr3 121634770 121634826 -37964957 - MER5A DNA MER1_type -1 188 136 2 1513 207 0 0 0 chr3 121634963 121634986 -37964797 + (TC)n Simple_repeat Simple_repeat 1 23 0 2 1513 334 321 0 18 chr3 121635157 121635268 -37964515 - PB1D10 SINE Alu -5 112 4 2 1513 981 337 47 13 chr3 121636285 121636733 -37963050 - LTR16B1 LTR ERVL 0 480 18 2 1513 1003 295 41 14 chr3 121637141 121637433 -37962350 + MTEa LTR MaLR 1 300 -79 2 1513 432 308 7 20 chr3 121638311 121638457 -37961326 + B1F1 SINE Alu 3 146 -3 2 1513 426 298 156 19 chr3 121638463 121638720 -37961063 + B4A SINE B4 1 292 0 3 1513 216 234 10 21 chr3 121638760 121638856 -37960927 + (CA)n Simple_repeat Simple_repeat 1 95 0 3 1513 249 260 13 13 chr3 121639564 121639642 -37960141 + (TA)n Simple_repeat Simple_repeat 1 78 0 3 1513 234 284 0 15 chr3 121640124 121640192 -37959591 - MIRb SINE MIR -149 119 53 3 1513 24 32 0 0 chr3 121640437 121640468 -37959315 + AT_rich Low_complexity Low_complexity 1 31 0 3 1513 1885 137 96 25 chr3 121640473 121640826 -37958957 - ORR1C1 LTR MaLR 0 378 1 3 1513 200 352 37 28 chr3 121641209 121641317 -37958466 + MIR SINE MIR 45 153 -55 3 1513 369 0 0 0 chr3 121641574 121641615 -37958168 + (GA)n Simple_repeat Simple_repeat 1 41 0 3 1513 935 266 92 17 chr3 121641698 121642082 -37957701 - L1_Mur3 LINE L1 -2102 4041 3604 3 1513 770 304 31 0 chr3 121642106 121642300 -37957483 - B3 SINE B2 -6 210 11 3 1513 1701 267 103 31 chr3 121642331 121642418 -37957365 - Lx8 LINE L1 0 7473 7388 3 1513 1666 226 33 47 chr3 121642418 121642535 -37957248 + MTC LTR MaLR 1 118 -303 3 1513 1149 92 35 75 chr3 121642535 121642586 -37957197 - B2_Mm1t SINE B2 -1 192 142 3 1513 180 0 0 0 chr3 121642586 121642606 -37957177 + (ATTG)n Simple_repeat Simple_repeat 2 21 0 3 1513 1149 92 35 75 chr3 121642606 121642754 -37957029 - B2_Mm1t SINE B2 -52 141 1 3 1513 1666 226 33 47 chr3 121642754 121643063 -37956720 + MTC LTR MaLR 119 421 0 3 1513 1701 267 103 31 chr3 121643063 121643625 -37956158 - Lx8 LINE L1 -86 7387 6778 3 1513 369 0 0 0 chr3 121644815 121644856 -37954927 + (TTAG)n Simple_repeat Simple_repeat 4 44 0 3 1513 639 243 34 103 chr3 121644856 121645327 -37954456 + RMER17C LTR ERVK 8 378 -32 3 1513 180 0 0 0 chr3 121646227 121646247 -37953536 + (TTAGGG)n Simple_repeat Simple_repeat 5 24 0 3 1513 224 224 202 24 chr3 121646248 121646378 -37953405 + MIRb SINE MIR 5 155 -107 3 1513 237 308 87 27 chr3 121647429 121647579 -37952204 + MIRc SINE MIR 69 227 -41 3 1513 198 0 0 0 chr3 121647588 121647610 -37952173 + (A)n Simple_repeat Simple_repeat 1 22 0 3 1513 840 262 89 42 chr3 121648118 121648477 -37951306 - MLT1B LTR MaLR -10 380 5 3 1513 447 19 0 0 chr3 121649892 121649944 -37949839 + (TG)n Simple_repeat Simple_repeat 2 53 0 3 1513 758 191 27 0 chr3 121650072 121650219 -37949564 + Lx7 LINE L1 7216 7366 -330 3 1513 507 191 17 25 chr3 121650247 121650262 -37949521 - B1_Mur4 SINE Alu 0 150 138 3 1513 693 66 0 0 chr3 121650262 121650353 -37949430 + (TTTTG)n Simple_repeat Simple_repeat 1 91 0 3 1513 544 196 0 0 chr3 121650353 121650455 -37949328 - B1_Mus1 SINE Alu -13 135 34 3 1513 22 56 0 0 chr3 121650456 121650492 -37949291 + AT_rich Low_complexity Low_complexity 1 36 0 3 1513 282 162 27 13 chr3 121650499 121650574 -37949209 + CT-rich Low_complexity Low_complexity 2 77 0 3 1513 762 203 43 38 chr3 121650618 121650828 -37948955 + Lx7 LINE L1 7486 7696 0 3 1513 207 343 14 0 chr3 121651620 121651690 -37948093 - L2a LINE L2 -42 3384 3314 3 1513 694 165 273 6 chr3 121651783 121651948 -37947835 - B3 SINE B2 -7 209 1 3 1513 846 139 15 0 chr3 121652258 121652395 -37947388 - B1_Mus2 SINE Alu 0 147 9 3 1513 466 269 56 67 chr3 121652260 121652414 -37947369 - B4 SINE B4 -69 223 72 3 1513 327 25 0 0 chr3 121652414 121652454 -37947329 + (CA)n Simple_repeat Simple_repeat 2 41 0 3 1513 466 269 56 67 chr3 121652454 121652478 -37947305 - B4 SINE B4 -221 71 48 3 1513 461 246 39 16 chr3 121652587 121652715 -37947068 + B3A SINE B2 2 132 -66 3 1513 324 111 0 0 chr3 121652718 121652772 -37947011 + (CA)n Simple_repeat Simple_repeat 1 54 0 3 1513 1203 48 0 7 chr3 121652801 121652949 -37946834 + B1_Mm SINE Alu 1 147 0 3 1513 21 0 0 0 chr3 121653068 121653089 -37946694 + AT_rich Low_complexity Low_complexity 1 21 0 3 1513 192 333 26 26 chr3 121653442 121653519 -37946264 + L2a LINE L2 3346 3422 -4 3 1513 201 147 0 0 chr3 121653937 121653971 -37945812 + (TTTG)n Simple_repeat Simple_repeat 3 36 0 3 1513 921 114 49 14 chr3 121654185 121654327 -37945456 + B1_Mus1 SINE Alu 2 148 0 3 1513 822 175 0 0 chr3 121654785 121654928 -37944855 - B1_Mur4 SINE Alu -1 149 7 3 1513 1098 261 88 27 chr3 121655055 121655386 -37944397 + MTE2a LTR MaLR 29 379 0 3 1513 217 232 29 0 chr3 121656094 121656206 -37943577 + (CGG)n Simple_repeat Simple_repeat 1 115 0 3 1513 424 173 237 39 chr3 121657382 121657538 -37942245 - Arthur1C DNA Tip100 -40 323 137 3 1513 954 211 19 28 chr3 121658562 121658776 -37941007 - B3 SINE B2 -3 213 2 3 1513 241 303 30 0 chr3 121659120 121659186 -37940597 - ID4 SINE ID 0 83 16 3 1513 288 227 45 0 chr3 121659322 121659410 -37940373 - L1MC5 LINE L1 -172 7789 7698 3 1513 316 286 189 84 chr3 121659545 121659820 -37939963 - L1ME1 LINE L1 -15 6164 5861 3 1513 280 276 155 23 chr3 121659822 121659838 -37939945 - L1ME2 LINE L1 -269 5895 5875 3 1513 736 252 20 10 chr3 121659838 121660042 -37939741 - B3 SINE B2 -10 206 1 3 1513 280 276 155 23 chr3 121660042 121660244 -37939539 - L1ME2 LINE L1 -290 5874 5648 3 1513 302 265 164 0 chr3 121660499 121660688 -37939095 - L1ME2 LINE L1 -848 5298 5079 3 1513 254 288 105 9 chr3 121660729 121660834 -37938949 - MER58A DNA MER1_type -27 197 83 3 1513 338 252 117 52 chr3 121661017 121661230 -37938553 - L1ME2 LINE L1 -1277 4869 4643 3 1513 740 155 1 3 chr3 121661231 121661363 -37938420 + B1_Mur2 SINE Alu 15 143 -6 3 1513 338 172 0 0 chr3 121661466 121661524 -37938259 + B1F SINE Alu 47 104 -45 3 1513 705 275 65 59 chr3 121661530 121661936 -37937847 - MTD LTR MaLR -14 405 5 3 1513 654 247 36 31 chr3 121662057 121662253 -37937530 - B3A SINE B2 0 198 2 3 1513 312 224 155 31 chr3 121662263 121662424 -37937359 - L1ME2 LINE L1 -1679 4467 4287 3 1513 874 273 231 52 chr3 121662559 121663307 -37936476 - L1MD LINE L1 -2097 4049 3141 3 1513 252 0 0 0 chr3 121663307 121663335 -37936448 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 3 1513 1009 124 0 0 chr3 121663335 121663472 -37936311 - B1_Mus2 SINE Alu -10 137 1 3 1513 874 291 135 31 chr3 121663472 121664304 -37935479 - L1MD LINE L1 -2997 3149 2185 3 1513 270 0 0 0 chr3 121664920 121664950 -37934833 + (TC)n Simple_repeat Simple_repeat 1 30 0 3 1513 1355 66 38 0 chr3 121664959 121665142 -37934641 - L1_Mus1 LINE L1 -2 6565 6376 3 1513 947 40 0 8 chr3 121665269 121665394 -37934389 + (TTC)n Simple_repeat Simple_repeat 1 124 0 3 1513 1105 82 0 0 chr3 121665394 121665529 -37934254 - B1_Mus2 SINE Alu -12 135 1 3 1513 1081 88 7 20 chr3 121665908 121666058 -37933725 - B1_Mus1 SINE Alu 0 148 1 3 1513 584 229 76 0 chr3 121666164 121666295 -37933488 + B1_Mur4 SINE Alu 5 145 -5 3 1513 1633 26 0 21 chr3 121666299 121666493 -37933290 + B2_Mm1a SINE B2 2 191 -2 3 1513 24 53 0 0 chr3 121666495 121666533 -37933250 + AT_rich Low_complexity Low_complexity 1 38 0 3 1513 1299 74 57 6 chr3 121666876 121667053 -37932730 - B2_Mm2 SINE B2 -9 186 1 3 1513 533 232 86 7 chr3 121667194 121667346 -37932437 - MER20 DNA MER1_type -24 195 32 3 1513 1164 83 0 0 chr3 121667596 121667740 -37932043 + B1_Mus1 SINE Alu 3 146 -2 3 1513 743 80 24 8 chr3 121667740 121667866 -37931917 + (GA)n Simple_repeat Simple_repeat 1 128 0 3 1513 726 170 6 124 chr3 121667905 121668066 -37931717 - B1_Mur4 SINE Alu 0 150 9 3 1513 1215 48 0 0 chr3 121668609 121668756 -37931027 + B1_Mus2 SINE Alu 1 147 0 3 1513 186 118 0 0 chr3 121668758 121668792 -37930991 + (CAAAAA)n Simple_repeat Simple_repeat 2 35 0 3 1513 565 285 0 8 chr3 121669364 121669488 -37930295 - ID_B1 SINE B4 -11 213 91 3 1513 322 342 199 0 chr3 121671051 121671274 -37928509 - MIR SINE MIR -3 265 5 3 1513 307 173 90 39 chr3 121672709 121672787 -37926996 - MIRb SINE MIR 0 268 187 3 1513 336 229 39 85 chr3 121673616 121673745 -37926038 + MT2B LTR ERVL 154 276 -325 3 1513 786 128 37 15 chr3 121673637 121673772 -37926011 + B1_Mus2 SINE Alu 10 147 0 3 1513 243 0 0 0 chr3 121674184 121674211 -37925572 + (TC)n Simple_repeat Simple_repeat 2 28 0 3 1513 773 222 0 22 chr3 121674211 121674349 -37925434 - B1_Mus1 SINE Alu -12 136 2 3 1513 229 182 91 0 chr3 121674490 121674538 -37925245 + Charlie9 DNA MER1_type 42 94 -2663 3 1513 788 247 22 17 chr3 121674538 121674719 -37925064 + B3A SINE B2 1 182 -16 3 1513 182 37 37 0 chr3 121674916 121674943 -37924840 + (GAAA)n Simple_repeat Simple_repeat 2 29 0 3 1513 912 144 14 0 chr3 121675447 121675593 -37924190 - B1_Mus1 SINE Alu 0 148 1 3 1513 522 244 8 16 chr3 121675614 121675735 -37924048 - B1F2 SINE Alu -2 147 28 3 1513 272 148 151 54 chr3 121675659 121675752 -37924031 - MT2B LTR ERVL -344 257 156 3 1513 204 395 35 0 chr3 121675938 121676024 -37923759 - MIRc SINE MIR -174 94 6 3 1513 787 156 37 0 chr3 121678470 121678605 -37921178 + B1_Mur4 SINE Alu 1 140 -10 3 1513 270 136 0 0 chr3 121678605 121678649 -37921134 + (TAA)n Simple_repeat Simple_repeat 1 44 0 3 1513 398 292 93 14 chr3 121678764 121678903 -37920880 + B4A SINE B4 141 290 -2 3 1513 225 0 0 0 chr3 121678914 121678939 -37920844 + (GA)n Simple_repeat Simple_repeat 2 26 0 3 1513 183 42 0 0 chr3 121679181 121679205 -37920578 + (CA)n Simple_repeat Simple_repeat 2 25 0 3 1513 445 235 290 13 chr3 121679635 121679790 -37919993 - B3 SINE B2 -9 207 10 3 1513 291 209 140 21 chr3 121680089 121680182 -37919601 - PB1D10 SINE Alu -3 114 11 3 1513 305 226 16 0 chr3 121680350 121680431 -37919352 + PB1D10 SINE Alu 14 98 -22 3 1513 219 244 132 11 chr3 121681402 121681493 -37918290 - MIRc SINE MIR -18 250 149 3 1513 186 43 0 0 chr3 121682175 121682198 -37917585 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 3 1513 1131 191 47 0 chr3 121682464 121682679 -37917104 - URR1B DNA MER1_type 0 225 1 3 1513 240 352 171 0 chr3 121682934 121683039 -37916744 + MIR SINE MIR 21 143 -119 3 1513 216 0 0 0 chr3 121683125 121683149 -37916634 + (TTTTG)n Simple_repeat Simple_repeat 5 28 0 3 1513 670 169 42 0 chr3 121683163 121683281 -37916502 - B1_Mus2 SINE Alu -20 127 5 4 1513 1201 41 0 7 chr3 121683543 121683690 -37916093 - B1_Mus2 SINE Alu 0 147 2 4 1513 261 0 0 0 chr3 121683986 121684015 -37915768 + (CTG)n Simple_repeat Simple_repeat 1 29 0 4 1513 292 333 110 7 chr3 121684020 121684156 -37915627 - RSINE1 SINE B4 -12 153 4 4 1513 214 20 18 91 chr3 121684165 121684220 -37915563 + (TTTTG)n Simple_repeat Simple_repeat 1 51 0 4 1513 869 164 0 21 chr3 121684223 121684366 -37915417 - B1_Mus1 SINE Alu -8 140 1 4 1513 522 196 79 18 chr3 121684386 121684500 -37915283 - ID_B1 SINE B4 -15 209 89 4 1513 24 32 0 0 chr3 121687335 121687366 -37912417 + AT_rich Low_complexity Low_complexity 1 31 0 4 1513 764 159 223 0 chr3 121687598 121687755 -37912028 + URR1A DNA MER1_type 35 226 0 4 1513 243 292 150 86 chr3 121688293 121688480 -37911303 - MIRb SINE MIR -11 257 59 4 1513 281 276 200 0 chr3 121688576 121688721 -37911062 - MIR SINE MIR -74 188 15 4 1513 22 0 0 0 chr3 121689389 121689411 -37910372 + AT_rich Low_complexity Low_complexity 1 22 0 4 1513 521 309 104 19 chr3 121689575 121690159 -37909624 - L1M5 LINE L1 -3176 2970 2337 4 1513 324 0 0 0 chr3 121692151 121692187 -37907596 + (T)n Simple_repeat Simple_repeat 1 36 0 4 1513 657 150 83 8 chr3 121692438 121692559 -37907224 + B1_Mur1 SINE Alu 16 145 -4 4 1513 215 31 31 0 chr3 121692574 121692606 -37907177 + (CAAAAA)n Simple_repeat Simple_repeat 2 34 0 4 1513 490 274 96 17 chr3 121692648 121692826 -37906957 - MER3 DNA MER1_type -5 204 13 4 1513 183 42 0 0 chr3 121692986 121693010 -37906773 + (TTTTTG)n Simple_repeat Simple_repeat 2 25 0 4 1513 898 224 5 40 chr3 121693496 121693719 -37906064 + B3 SINE B2 2 216 0 4 1513 185 283 22 0 chr3 121694607 121694653 -37905130 + MER5B DNA MER1_type 131 177 -1 4 1513 403 323 114 0 chr3 121695899 121696066 -37903717 - MER5A DNA MER1_type -3 186 1 4 1513 279 240 72 10 chr3 121696777 121696874 -37902909 + CT-rich Low_complexity Low_complexity 1 103 0 4 1513 415 275 22 0 chr3 121696879 121696970 -37902813 - PB1D10 SINE Alu -8 109 17 4 1513 268 320 18 88 chr3 121696895 121696971 -37902812 - ID_B1 SINE B4 -51 173 98 4 1513 4419 111 65 4 chr3 121696971 121697679 -37902104 - RMER6A LTR ERVK -4 752 2 4 1513 268 320 18 88 chr3 121697679 121697715 -37902068 - ID_B1 SINE B4 -127 97 69 4 1513 451 282 117 6 chr3 121698225 121698550 -37901233 - L1MD2 LINE L1 -438 5921 5561 4 1513 185 0 40 0 chr3 121698774 121698799 -37900984 + (TTTTTG)n Simple_repeat Simple_repeat 3 28 0 4 1513 357 238 73 73 chr3 121698903 121699107 -37900676 - L1MC LINE L1 -1029 5117 4914 4 1513 433 233 144 10 chr3 121699234 121699338 -37900445 + ID_B1 SINE B4 90 207 -17 4 1513 260 270 138 89 chr3 121699343 121699546 -37900237 - MER74B LTR ERVL -234 388 176 4 1513 791 200 34 29 chr3 121699610 121699785 -37899998 + B2_Mm2 SINE B2 1 176 -19 4 1513 1149 50 0 0 chr3 121699786 121699925 -37899858 + B1_Mus1 SINE Alu 1 139 -9 4 1513 183 42 0 0 chr3 121699925 121699949 -37899834 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 4 1513 323 329 115 62 chr3 121699966 121700287 -37899496 - L1MD2 LINE L1 -1857 4289 3952 4 1513 192 200 0 0 chr3 121700325 121700365 -37899418 + CT-rich Low_complexity Low_complexity 4 43 0 4 1513 394 232 242 29 chr3 121700368 121700612 -37899171 - L1MD2 LINE L1 -2464 3682 3387 4 1513 294 125 0 0 chr3 121700618 121700666 -37899117 + (CATA)n Simple_repeat Simple_repeat 4 51 0 4 1513 573 262 112 25 chr3 121700700 121701186 -37898597 - L1MD2 LINE L1 -2834 3710 3149 4 1513 421 301 142 30 chr3 121701299 121701585 -37898198 - L1MD2 LINE L1 -3434 3110 2787 4 1513 1149 257 108 13 chr3 121701585 121701964 -37897819 - MTD LTR MaLR -2 417 3 4 1513 421 301 142 30 chr3 121701964 121702016 -37897767 - L1MD2 LINE L1 -3758 2786 2734 4 1513 251 54 0 26 chr3 121702036 121702074 -37897709 + (ATATG)n Simple_repeat Simple_repeat 1 37 0 4 1513 574 244 154 43 chr3 121702368 121702556 -37897227 - B4 SINE B4 -1 291 83 4 1513 386 292 35 64 chr3 121702796 121702968 -37896815 - RMER15 LTR ERVL -7 568 402 4 1513 229 299 106 28 chr3 121702968 121703147 -37896636 - Lx8 LINE L1 -248 7225 7033 4 1513 309 308 141 55 chr3 121703526 121703746 -37896037 - L1MD2 LINE L1 -6241 306 68 4 1513 199 382 20 0 chr3 121703898 121704000 -37895783 - MIR SINE MIR -49 213 110 4 1513 435 227 75 62 chr3 121704880 121705040 -37894743 - RSINE1 SINE B4 0 165 4 4 1513 2954 179 57 14 chr3 121706495 121707123 -37892660 - Lx5 LINE L1 0 7050 6396 4 1513 1528 53 5 0 chr3 121707509 121707697 -37892086 + B2_Mm1t SINE B2 2 190 -3 4 1513 313 250 14 0 chr3 121707822 121707894 -37891889 - ID4_ SINE ID -9 74 2 4 1513 287 219 21 0 chr3 121708308 121708404 -37891379 + (TA)n Simple_repeat Simple_repeat 2 99 0 4 1513 256 277 31 0 chr3 121708995 121709060 -37890723 + ID4 SINE ID 17 83 0 4 1513 852 248 10 10 chr3 121710055 121710263 -37889520 - B3 SINE B2 -6 210 3 4 1513 22 35 0 0 chr3 121711175 121711204 -37888579 + AT_rich Low_complexity Low_complexity 1 29 0 4 1513 238 214 18 0 chr3 121712004 121712060 -37887723 + CT-rich Low_complexity Low_complexity 3 59 0 4 1513 1147 153 35 5 chr3 121712412 121712609 -37887174 - B3 SINE B2 -13 203 1 4 1513 180 250 238 0 chr3 121713389 121713469 -37886314 - L2 LINE L2 -341 3078 2980 4 1513 434 311 40 49 chr3 121714577 121714853 -37884930 - B4 SINE B4 -16 276 16 4 1513 193 325 169 19 chr3 121715336 121715543 -37884240 - MIR SINE MIR -18 244 7 4 1513 349 297 120 63 chr3 121715707 121715865 -37883918 + B3A SINE B2 5 171 -27 4 1513 1468 164 57 23 chr3 121716401 121716700 -37883083 - Lx4B LINE L1 0 7058 6750 4 1513 321 231 141 37 chr3 121720197 121720332 -37879451 - L1MC4 LINE L1 -412 7630 7482 4 1513 299 312 16 118 chr3 121721188 121721315 -37878468 + PB1 SINE Alu 2 115 -2 4 1513 1635 146 210 3 chr3 121721464 121721788 -37877995 + ORR1B1 LTR MaLR 2 392 -2 4 1513 2309 207 72 43 chr3 121721788 121722766 -37877017 + ORR1B1-int LTR MaLR 3 976 -987 4 1513 386 304 96 8 chr3 121722807 121723040 -37876743 + B4A SINE B4 6 286 -6 4 1513 489 146 0 43 chr3 121723159 121723252 -37876531 + B1_Mur3 SINE Alu 61 149 0 4 1513 905 67 76 0 chr3 121723594 121723713 -37876070 + B1_Mus1 SINE Alu 2 129 -19 4 1513 243 79 0 0 chr3 121723713 121723751 -37876032 + (TTAA)n Simple_repeat Simple_repeat 1 38 0 4 1513 235 138 186 71 chr3 121723759 121723813 -37875970 + B1_Mur4 SINE Alu 68 131 -19 4 1513 414 0 0 0 chr3 121723813 121723859 -37875924 + (TAAA)n Simple_repeat Simple_repeat 3 48 0 4 1513 235 138 186 71 chr3 121723859 121723874 -37875909 + B1_Mur4 SINE Alu 132 145 -5 4 1513 700 265 113 15 chr3 121723888 121724091 -37875692 + B4A SINE B4 2 224 -68 4 1513 240 186 67 24 chr3 121724103 121724172 -37875611 + B2_Mm2 SINE B2 1 76 -140 4 1513 537 242 190 6 chr3 121724491 121724649 -37875134 + B3 SINE B2 27 213 -3 4 1513 186 43 0 0 chr3 121724693 121724716 -37875067 + (CG)n Simple_repeat Simple_repeat 1 23 0 4 1513 264 77 0 0 chr3 121724716 121724754 -37875029 + (CA)n Simple_repeat Simple_repeat 1 39 0 4 1513 1100 70 14 14 chr3 121724810 121724956 -37874827 - B1_Mus2 SINE Alu 0 147 2 4 1513 1572 43 5 0 chr3 121724986 121725172 -37874611 + B2_Mm1t SINE B2 1 187 -6 4 1513 556 151 159 45 chr3 121725186 121725318 -37874465 + B1_Mur4 SINE Alu 4 150 0 4 1513 254 300 30 85 chr3 121725376 121725540 -37874243 + L1M5 LINE L1 4036 4190 -1956 4 1513 194 91 0 29 chr3 121725540 121725574 -37874209 + (GGA)n Simple_repeat Simple_repeat 1 33 0 4 1513 605 300 57 24 chr3 121725575 121725787 -37873996 + ID_B1 SINE B4 5 223 -1 4 1513 21 0 0 0 chr3 121725872 121725893 -37873890 + AT_rich Low_complexity Low_complexity 1 21 0 4 1513 1242 34 0 0 chr3 121726249 121726395 -37873388 + B1_Mm SINE Alu 2 147 0 4 1513 183 80 0 0 chr3 121726395 121726420 -37873363 + (A)n Simple_repeat Simple_repeat 1 25 0 4 1513 1168 50 14 0 chr3 121726430 121726571 -37873212 + B1_Mus1 SINE Alu 4 146 -2 4 1513 203 61 0 29 chr3 121726571 121726605 -37873178 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 4 1513 543 227 4 2 chr3 121726886 121727000 -37872783 - B1_Mus1 SINE Alu -1 119 5 4 1513 383 271 0 21 chr3 121727045 121727154 -37872629 - ID4 SINE ID -50 102 2 4 1513 238 167 16 16 chr3 121727597 121727658 -37872125 + (CAA)n Simple_repeat Simple_repeat 2 62 0 4 1513 429 282 29 0 chr3 121728136 121728239 -37871544 - PB1 SINE Alu -8 119 14 4 1513 857 74 8 0 chr3 121728392 121728514 -37871269 + (TTTC)n Simple_repeat Simple_repeat 3 125 0 4 1513 309 51 0 0 chr3 121728521 121728560 -37871223 + (TTTG)n Simple_repeat Simple_repeat 1 39 0 4 1513 416 186 69 11 chr3 121728560 121728640 -37871143 - B1F1 SINE Alu -13 136 51 4 1513 270 0 0 0 chr3 121728846 121728876 -37870907 + (TG)n Simple_repeat Simple_repeat 1 30 0 4 1513 645 170 6 124 chr3 121728884 121729006 -37870777 - B3A SINE B2 -59 136 36 4 1513 785 50 34 0 chr3 121729006 121729125 -37870658 + (GTTTG)n Simple_repeat Simple_repeat 2 124 0 4 1513 1113 72 0 0 chr3 121729125 121729263 -37870520 - B1_Mus1 SINE Alu -9 139 2 4 1513 645 162 7 116 chr3 121729263 121729304 -37870479 - B3A SINE B2 -157 41 2 4 1513 521 162 0 19 chr3 121730041 121730148 -37869635 + GA-rich Low_complexity Low_complexity 1 105 0 4 1513 795 163 7 28 chr3 121730252 121730397 -37869386 - B1_Mus2 SINE Alu -1 146 5 4 1513 201 121 0 0 chr3 121731103 121731136 -37868647 + (T)n Simple_repeat Simple_repeat 1 33 0 4 1513 984 41 8 0 chr3 121731153 121731274 -37868509 + B1_Mm SINE Alu 25 146 -1 4 1513 586 297 7 40 chr3 121731360 121731378 -37868405 + ID_B1 SINE B4 73 201 -23 4 1513 259 293 65 54 chr3 121731378 121731491 -37868292 - YREP_Mm Unknown Unknown -1504 308 201 4 1513 969 99 210 6 chr3 121731491 121731653 -37868130 - B2_Mm2 SINE B2 0 195 1 4 1513 586 297 7 40 chr3 121731653 121731672 -37868111 + ID_B1 SINE B4 202 218 -6 4 1513 259 293 65 54 chr3 121731672 121731723 -37868060 - YREP_Mm Unknown Unknown -1612 200 123 4 1513 2609 85 155 2 chr3 121731978 121732390 -37867393 + IAPLTR2_Mm LTR ERVK 1 475 0 4 1513 264 30 0 0 chr3 121732488 121732521 -37867262 + (TG)n Simple_repeat Simple_repeat 2 34 0 5 1513 515 195 9 0 chr3 121732539 121732652 -37867131 + (CATA)n Simple_repeat Simple_repeat 3 116 0 5 1513 293 306 133 7 chr3 121732832 121732967 -37866816 + MIRc SINE MIR 65 216 -52 5 1513 290 287 99 27 chr3 121733006 121733117 -37866666 + B4 SINE B4 1 119 -173 5 1513 220 193 68 34 chr3 121733114 121733173 -37866610 + PB1D10 SINE Alu 52 112 -5 5 1513 290 98 20 0 chr3 121733239 121733290 -37866493 + (CA)n Simple_repeat Simple_repeat 1 52 0 5 1513 567 82 0 315 chr3 121733643 121733727 -37866056 + B1_Mur1 SINE Alu 1 64 -85 5 1513 1243 48 0 0 chr3 121733727 121733874 -37865909 - B1_Mus2 SINE Alu 0 147 1 5 1513 585 43 0 81 chr3 121733874 121733967 -37865816 + B1_Mus2 SINE Alu 52 122 -27 5 1513 728 182 53 0 chr3 121733971 121734103 -37865680 + B1_Mur3 SINE Alu 3 141 -8 5 1513 369 284 10 10 chr3 121734238 121734341 -37865442 + PB1D7 SINE Alu 1 103 -17 5 1513 1180 68 0 0 chr3 121734918 121735065 -37864718 - B1_Mus2 SINE Alu 0 147 1 5 1513 723 189 13 47 chr3 121735386 121735521 -37864262 + B1_Mur4 SINE Alu 5 137 -13 5 1513 180 0 0 0 chr3 121735521 121735541 -37864242 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 5 1513 723 189 13 47 chr3 121735541 121735555 -37864228 + B1_Mur4 SINE Alu 138 149 -1 5 1513 499 261 46 8 chr3 121735561 121735692 -37864091 - ID_B1 SINE B4 -1 223 88 5 1513 1129 121 35 0 chr3 121735755 121735929 -37863854 - B2_Mm2 SINE B2 -15 180 1 5 1513 1168 57 0 0 chr3 121737578 121737718 -37862065 + B1_Mus1 SINE Alu 2 141 -7 5 1513 423 0 0 0 chr3 121737720 121737767 -37862016 + (GAAA)n Simple_repeat Simple_repeat 2 48 0 5 1513 256 306 127 18 chr3 121738500 121738610 -37861173 + L2 LINE L2 1981 2102 -1317 5 1513 204 40 0 0 chr3 121738610 121738635 -37861148 + (CCCCCT)n Simple_repeat Simple_repeat 5 29 0 5 1513 452 328 14 43 chr3 121738781 121738988 -37860795 - L1ME3A LINE L1 -54 6119 5919 5 1513 701 286 12 0 chr3 121739123 121739284 -37860499 + RSINE1 SINE B4 3 165 0 5 1513 5657 142 29 9 chr3 121739294 121740178 -37859605 - RMER19B LTR ERVK 0 902 1 5 1513 181 175 70 0 chr3 121740180 121740237 -37859546 + (TATATG)n Simple_repeat Simple_repeat 4 64 0 5 1513 324 0 0 0 chr3 121740380 121740416 -37859367 + (T)n Simple_repeat Simple_repeat 1 36 0 5 1513 672 332 66 25 chr3 121740887 121741128 -37858655 - B4 SINE B4 -8 284 34 5 1513 442 211 33 0 chr3 121741310 121741400 -37858383 + B4A SINE B4 173 265 -27 5 1513 22 35 0 0 chr3 121741675 121741704 -37858079 + AT_rich Low_complexity Low_complexity 1 29 0 5 1513 31 0 0 0 chr3 121742069 121742100 -37857683 + AT_rich Low_complexity Low_complexity 1 31 0 5 1513 601 154 18 12 chr3 121742103 121742267 -37857516 + (TG)n Simple_repeat Simple_repeat 1 165 0 5 1513 265 222 20 0 chr3 121742285 121742384 -37857399 + (TG)n Simple_repeat Simple_repeat 2 102 0 5 1513 463 331 26 13 chr3 121742391 121742547 -37857236 - RSINE1 SINE B4 0 165 8 5 1513 25 0 0 0 chr3 121742753 121742778 -37857005 + AT_rich Low_complexity Low_complexity 1 25 0 5 1513 370 284 50 50 chr3 121742843 121742959 -37856824 - L1MA6 LINE L1 -53 6247 6138 5 1513 543 283 49 54 chr3 121742959 121743183 -37856600 - ID_B1 SINE B4 -1 223 1 5 1513 370 284 50 50 chr3 121743183 121743285 -37856498 - L1MA6 LINE L1 -163 6137 6029 5 1513 793 259 24 76 chr3 121743886 121743930 -37855853 + MLT1A0 LTR MaLR 3 35 -330 5 1513 998 110 0 0 chr3 121743930 121744066 -37855717 + B1_Mus2 SINE Alu 2 137 -10 5 1513 233 0 62 0 chr3 121744066 121744098 -37855685 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 5 1513 793 259 24 76 chr3 121744098 121744303 -37855480 + MLT1A0 LTR MaLR 36 239 -126 5 1513 355 224 224 26 chr3 121744406 121744562 -37855221 + L1MB3 LINE L1 5894 6080 -103 5 1513 688 189 0 24 chr3 121744666 121744791 -37854992 - B1_Mur4 SINE Alu -27 123 2 5 1513 181 231 200 0 chr3 121744940 121745005 -37854778 + L3 LINE CR1 829 906 -3583 5 1513 1135 69 14 0 chr3 121745039 121745184 -37854599 + B1_Mus1 SINE Alu 2 148 0 5 1513 272 315 22 51 chr3 121745337 121745474 -37854309 + L2 LINE L2 2281 2413 -1006 5 1513 528 297 0 14 chr3 121745509 121745649 -37854134 + ID_B1 SINE B4 81 218 -6 5 1513 261 0 0 0 chr3 121747807 121747836 -37851947 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 5 1513 212 0 36 0 chr3 121748063 121748091 -37851692 + (CCCCCA)n Simple_repeat Simple_repeat 1 29 0 5 1513 438 192 0 49 chr3 121748365 121748447 -37851336 + ID_B1 SINE B4 132 209 -15 5 1513 729 79 0 0 chr3 121748468 121748569 -37851214 + (GGA)n Simple_repeat Simple_repeat 2 102 0 5 1513 273 207 0 65 chr3 121748705 121748767 -37851016 + B4A SINE B4 235 292 0 5 1513 212 326 42 42 chr3 121749307 121749403 -37850380 - L2c LINE L2 0 3387 3292 5 1513 710 122 160 16 chr3 121750803 121750928 -37848855 + B1_Mus1 SINE Alu 6 148 0 5 1513 365 350 12 6 chr3 121751812 121751976 -37847807 - MIR SINE MIR -29 233 69 5 1513 204 163 184 0 chr3 121752027 121752076 -37847707 - MIRm SINE MIR -122 154 97 5 1513 1118 99 93 0 chr3 121752916 121753078 -37846705 + B2_Mm1t SINE B2 2 178 -15 5 1513 303 139 333 77 chr3 121753107 121753224 -37846559 + B2_Mm2 SINE B2 47 193 -2 5 1513 219 321 188 0 chr3 121753820 121753932 -37845851 + MIR3 SINE MIR 15 147 -61 5 1513 841 164 0 0 chr3 121754018 121754164 -37845619 + B1_Mur3 SINE Alu 4 149 0 5 1513 288 313 30 91 chr3 121754021 121754186 -37845597 + B4A SINE B4 92 246 -46 5 1513 302 190 96 130 chr3 121754691 121754806 -37844977 - PB1D10 SINE Alu 0 117 7 5 1513 4051 112 16 13 chr3 121754958 121755573 -37844210 - Lx LINE L1 -7 6647 6031 5 1513 1312 164 0 53 chr3 121756699 121756925 -37842858 - URR1B DNA MER1_type -11 214 1 5 1513 189 329 13 64 chr3 121756927 121757005 -37842778 + L2b LINE L2 3276 3349 -26 5 1513 36 70 0 0 chr3 121758153 121758224 -37841559 + AT_rich Low_complexity Low_complexity 1 71 0 5 1513 271 233 9 159 chr3 121758483 121758590 -37841193 + B4A SINE B4 99 189 -103 5 1513 283 281 0 0 chr3 121758596 121758653 -37841130 + RSINE1 SINE B4 109 165 0 5 1513 660 205 269 0 chr3 121759202 121759358 -37840425 + B3 SINE B2 2 199 -17 5 1513 315 0 0 0 chr3 121759364 121759399 -37840384 + (CAGA)n Simple_repeat Simple_repeat 4 38 0 5 1513 697 207 21 14 chr3 121759401 121759543 -37840240 + B1_Mur4 SINE Alu 2 144 -6 5 1513 1016 146 0 6 chr3 121760398 121760577 -37839206 + CT-rich Low_complexity Low_complexity 3 180 0 5 1513 459 0 0 0 chr3 121760603 121760654 -37839129 + (TCTA)n Simple_repeat Simple_repeat 1 51 0 5 1513 520 274 52 0 chr3 121760655 121760790 -37838993 - B1F SINE Alu -7 142 1 5 1513 252 0 0 0 chr3 121761075 121761103 -37838680 + (CAAAAA)n Simple_repeat Simple_repeat 3 30 0 5 1513 207 308 62 25 chr3 121762102 121762182 -37837601 - L2b LINE L2 -6 3369 3287 5 1513 205 262 22 77 chr3 121763108 121763199 -37836584 - MIRb SINE MIR -6 262 177 5 1513 195 42 0 0 chr3 121763565 121763589 -37836194 + (T)n Simple_repeat Simple_repeat 1 24 0 5 1513 833 159 14 7 chr3 121763590 121763736 -37836047 + B1_Mm SINE Alu 1 147 0 5 1513 326 214 18 0 chr3 121763750 121763806 -37835977 - RSINE1 SINE B4 -105 60 4 5 1513 1512 307 124 23 chr3 121763808 121764645 -37835138 - L1M2 LINE L1 -744 5399 4478 5 1513 1198 81 6 39 chr3 121764694 121764716 -37835067 - B2_Mm2 SINE B2 -19 176 159 5 1513 222 37 0 0 chr3 121764716 121764743 -37835040 + (TTTA)n Simple_repeat Simple_repeat 3 29 0 5 1513 1198 81 6 39 chr3 121764743 121764900 -37834883 - B2_Mm2 SINE B2 -37 158 3 5 1513 378 247 222 103 chr3 121764994 121765179 -37834604 - MER20 DNA MER1_type -2 217 11 5 1514 495 0 0 0 chr3 121766118 121766173 -37833610 + (TC)n Simple_repeat Simple_repeat 2 56 0 5 1514 330 26 0 0 chr3 121766173 121766211 -37833572 + (TG)n Simple_repeat Simple_repeat 2 40 0 5 1514 1569 180 55 18 chr3 121766220 121766548 -37833235 + ORR1C2 LTR MaLR 40 379 -5 5 1514 519 238 25 112 chr3 121766568 121766729 -37833054 + B3A SINE B2 51 197 -1 5 1514 207 114 0 28 chr3 121766897 121766933 -37832850 + (TTA)n Simple_repeat Simple_repeat 1 35 0 5 1514 233 206 36 46 chr3 121767018 121767120 -37832663 - MIR SINE MIR -134 134 36 5 1514 351 325 119 12 chr3 121767135 121767303 -37832480 + MER5A DNA MER1_type 4 189 0 5 1514 269 262 136 76 chr3 121768502 121768634 -37831149 + MIR SINE MIR 107 246 -16 5 1514 767 144 8 0 chr3 121768645 121768763 -37831020 - ID_B1 SINE B4 -4 220 102 5 1514 480 257 51 7 chr3 121768648 121768785 -37830998 - B1_Mur4 SINE Alu -7 143 1 5 1514 230 366 18 18 chr3 121768982 121769096 -37830687 + L2c LINE L2 3225 3338 -49 5 1514 2333 169 40 7 chr3 121769189 121769594 -37830189 + MTC LTR MaLR 4 421 0 5 1514 1905 191 36 22 chr3 121769594 121769936 -37829847 + MTD LTR MaLR 73 419 0 5 1514 370 212 80 43 chr3 121770525 121770663 -37829120 - MER53 DNA hAT -11 182 40 5 1514 396 212 235 8 chr3 121770664 121770783 -37829000 + B1F SINE Alu 2 147 -2 5 1514 776 325 57 62 chr3 121771013 121771126 -37828657 - MLT1D LTR MaLR -9 496 395 5 1514 1461 59 11 11 chr3 121771126 121771315 -37828468 + B2_Mm2 SINE B2 2 190 -5 5 1514 776 325 57 62 chr3 121771315 121771572 -37828211 - MLT1D LTR MaLR -111 394 128 5 1514 584 146 214 24 chr3 121771594 121771720 -37828063 - B1_Mur4 SINE Alu 0 150 1 5 1514 277 223 760 18 chr3 121772414 121772526 -37827257 + RMER30 DNA MER1_type 7 201 -1 5 1514 598 147 8 8 chr3 121773148 121773278 -37826505 + CT-rich Low_complexity Low_complexity 2 131 0 5 1514 267 128 0 0 chr3 121773291 121773330 -37826453 - B1_Mus2 SINE Alu -27 120 82 5 1514 468 35 0 0 chr3 121773343 121773401 -37826382 + (TC)n Simple_repeat Simple_repeat 1 58 0 5 1514 528 229 142 7 chr3 121773422 121773563 -37826220 + ID_B1 SINE B4 8 167 -57 6 1514 285 222 76 120 chr3 121773496 121773588 -37826195 + PB1D7 SINE Alu 20 107 -13 6 1514 1774 145 128 12 chr3 121774402 121774745 -37825038 - ORR1B1 LTR MaLR -2 392 10 6 1514 715 266 21 92 chr3 121775029 121775114 -37824669 + ID SINE ID 1 87 -137 6 1514 275 49 24 0 chr3 121775114 121775155 -37824628 + (CAAA)n Simple_repeat Simple_repeat 2 43 0 6 1514 715 266 21 92 chr3 121775155 121775309 -37824474 + ID_B1 SINE B4 88 223 -1 6 1514 230 351 53 0 chr3 121775360 121775454 -37824329 - MER5B DNA MER1_type -76 102 4 6 1514 249 247 0 0 chr3 121776441 121776522 -37823261 + (TCTCTG)n Simple_repeat Simple_repeat 2 82 0 6 1514 440 100 12 0 chr3 121776529 121776609 -37823174 + (TC)n Simple_repeat Simple_repeat 2 82 0 6 1514 180 0 0 0 chr3 121776609 121776629 -37823154 + (CA)n Simple_repeat Simple_repeat 1 20 0 6 1514 223 163 0 0 chr3 121776849 121776892 -37822891 + A-rich Low_complexity Low_complexity 3 45 0 6 1514 313 117 33 0 chr3 121777684 121777744 -37822039 + (TCCC)n Simple_repeat Simple_repeat 3 64 0 6 1514 183 80 0 0 chr3 121777841 121777866 -37821917 + (TGGGGG)n Simple_repeat Simple_repeat 5 29 0 6 1514 311 65 22 0 chr3 121777881 121777927 -37821856 + (TG)n Simple_repeat Simple_repeat 1 47 0 6 1514 236 292 129 52 chr3 121778461 121778616 -37821167 - Charlie4z DNA MER1_type 0 167 1 6 1514 1028 273 0 5 chr3 121779595 121779812 -37819971 + B4 SINE B4 14 229 -63 6 1514 396 239 0 14 chr3 121779836 121779908 -37819875 + B4 SINE B4 222 292 0 6 1514 500 157 34 13 chr3 121779915 121780064 -37819719 + (CA)n Simple_repeat Simple_repeat 1 152 0 6 1514 537 162 34 17 chr3 121780111 121780287 -37819496 + (CA)n Simple_repeat Simple_repeat 2 180 0 6 1514 652 174 12 27 chr3 121780311 121780646 -37819137 + (CA)n Simple_repeat Simple_repeat 1 329 0 6 1514 1235 48 0 0 chr3 121780814 121780959 -37818824 + B1_Mm SINE Alu 1 145 -2 6 1514 1153 110 12 0 chr3 121782410 121782583 -37817200 - URR1A DNA MER1_type 0 226 52 6 1514 304 173 19 0 chr3 121783253 121783305 -37816478 - HAL1-3A_ME LINE L1 -831 2027 1975 6 1514 684 177 0 0 chr3 121783305 121783446 -37816337 + (TG)n Simple_repeat Simple_repeat 2 142 0 6 1514 1050 288 21 14 chr3 121783494 121783783 -37816000 - B4A SINE B4 0 292 2 6 1514 1311 20 0 0 chr3 121784825 121784971 -37814812 + B1_Mm SINE Alu 2 147 0 6 1514 198 0 0 0 chr3 121785517 121785539 -37814244 + (T)n Simple_repeat Simple_repeat 1 22 0 6 1514 300 53 0 0 chr3 121785849 121785887 -37813896 + (CA)n Simple_repeat Simple_repeat 2 39 0 6 1514 594 307 22 17 chr3 121785997 121786176 -37813607 + B3A SINE B2 1 180 -18 6 1514 687 199 246 0 chr3 121786554 121786725 -37813058 + B3 SINE B2 4 216 0 6 1514 531 278 216 29 chr3 121787078 121787319 -37812464 + B4A SINE B4 7 292 0 6 1514 235 346 58 76 chr3 121787295 121787379 -37812404 - RMER12 LTR ERVK -474 848 764 6 1514 972 150 179 16 chr3 121787379 121787569 -37812214 + URR1B DNA MER1_type 5 225 0 6 1514 235 346 58 76 chr3 121787569 121787656 -37812127 - RMER12 LTR ERVK -559 763 680 6 1514 377 37 0 36 chr3 121788063 121788119 -37811664 + (GGGTG)n Simple_repeat Simple_repeat 3 56 0 6 1514 282 56 0 0 chr3 121788677 121788713 -37811070 + (CGTG)n Simple_repeat Simple_repeat 4 39 0 6 1514 323 113 0 102 chr3 121788713 121788772 -37811011 - HAL1-3A_ME LINE L1 -847 2011 1959 6 1514 640 90 0 0 chr3 121789165 121789254 -37810529 + B3 SINE B2 2 90 -126 6 1514 279 0 0 0 chr3 121789316 121789347 -37810436 + (TTA)n Simple_repeat Simple_repeat 3 33 0 6 1514 248 314 176 27 chr3 121790616 121790917 -37808866 + L2 LINE L2 2245 2590 -829 6 1514 418 320 92 65 chr3 121790962 121791146 -37808637 - MIRb SINE MIR -45 223 35 6 1514 392 260 0 16 chr3 121791741 121791849 -37807934 - ID4 SINE ID -37 115 13 6 1514 194 226 32 16 chr3 121792478 121792541 -37807242 + MER5A DNA MER1_type 43 106 -83 6 1514 262 207 24 12 chr3 121792820 121792903 -37806880 + CT-rich Low_complexity Low_complexity 1 84 0 6 1514 284 304 113 21 chr3 121793056 121793197 -37806586 + MIR SINE MIR 98 251 -11 6 1514 639 238 17 75 chr3 121794946 121795119 -37804664 - RSINE1 SINE B4 0 165 3 6 1514 292 312 135 49 chr3 121796052 121796237 -37803546 - MIRb SINE MIR -45 223 23 6 1514 1170 48 0 52 chr3 121797033 121797188 -37802595 - B1_Mus1 SINE Alu 0 148 2 6 1514 3813 142 88 20 chr3 121797191 121797895 -37801888 - RMER6A LTR ERVK -3 753 2 6 1514 1148 89 0 4 chr3 121798339 121798564 -37801219 + (TCTA)n Simple_repeat Simple_repeat 1 224 0 6 1514 186 43 0 0 chr3 121798574 121798597 -37801186 + (TCCA)n Simple_repeat Simple_repeat 1 23 0 6 1514 1296 84 0 0 chr3 121798597 121798776 -37801007 + (TCTA)n Simple_repeat Simple_repeat 2 180 0 6 1514 243 337 30 20 chr3 121800564 121800664 -37799119 + MIR SINE MIR 146 246 -16 6 1514 310 277 8 0 chr3 121800664 121800749 -37799034 - ID4 SINE ID -41 111 25 6 1514 185 316 0 17 chr3 121800798 121800856 -37798927 - MIRc SINE MIR -50 218 162 6 1514 526 290 0 8 chr3 121801622 121801754 -37798029 - MER3 DNA MER1_type -76 133 3 6 1514 244 273 86 4 chr3 121802364 121802501 -37797282 - L1MA4 LINE L1 -281 6019 5872 6 1514 207 0 0 0 chr3 121802629 121802652 -37797131 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 6 1514 836 162 7 0 chr3 121802652 121802788 -37796995 - B1_Mur4 SINE Alu -11 139 3 6 1514 241 243 8 164 chr3 121802800 121802928 -37796855 + RLTR9B LTR ERVK 98 205 -232 6 1514 387 0 0 0 chr3 121802962 121803005 -37796778 + (CA)n Simple_repeat Simple_repeat 2 44 0 6 1514 21 0 0 0 chr3 121803520 121803541 -37796242 + AT_rich Low_complexity Low_complexity 1 21 0 6 1514 917 162 176 10 chr3 121803612 121803805 -37795978 - URR1A DNA MER1_type -1 225 1 6 1514 180 0 0 0 chr3 121803969 121803989 -37795794 + (GA)n Simple_repeat Simple_repeat 2 21 0 6 1514 281 268 27 27 chr3 121804217 121804290 -37795493 + MER81 DNA AcHobo 21 93 -21 6 1514 182 256 23 23 chr3 121804387 121804431 -37795352 - MER5B DNA MER1_type -45 133 90 6 1514 209 331 46 35 chr3 121804609 121804732 -37795051 + L2b LINE L2 3273 3387 0 6 1514 441 0 0 0 chr3 121804913 121804962 -37794821 + (TC)n Simple_repeat Simple_repeat 2 50 0 6 1514 432 55 0 0 chr3 121805369 121805424 -37794359 + (CA)n Simple_repeat Simple_repeat 1 55 0 6 1514 476 309 74 55 chr3 121805967 121806037 -37793746 - CYRA11_Mm Unknown Y-chromosome -169 448 173 6 1514 992 161 119 40 chr3 121806037 121806238 -37793545 + URR1B DNA MER1_type 7 223 -2 6 1514 315 0 0 0 chr3 121809054 121809089 -37790694 + (TC)n Simple_repeat Simple_repeat 1 35 0 6 1514 509 256 0 106 chr3 121809114 121809302 -37790481 + RMER17C LTR ERVK 162 329 -81 6 1514 185 233 126 53 chr3 121809856 121809951 -37789832 - MIR3 SINE MIR -2 206 105 6 1514 324 0 0 0 chr3 121810299 121810335 -37789448 + (TG)n Simple_repeat Simple_repeat 2 37 0 6 1514 4136 61 27 0 chr3 121811694 121812220 -37787563 + L1_Mus1 LINE L1 6028 6567 0 6 1514 1740 265 105 22 chr3 121812242 121812959 -37786824 - Lx8 LINE L1 0 7473 6698 6 1514 496 221 203 36 chr3 121812969 121813193 -37786590 - MER57E1 LTR ERV1 -61 341 5 6 1514 342 0 0 0 chr3 121814587 121814625 -37785158 + (TG)n Simple_repeat Simple_repeat 2 39 0 6 1514 187 244 44 0 chr3 121815655 121815700 -37784083 + L2a LINE L2 2604 2650 -769 6 1514 819 271 94 54 chr3 121815701 121815978 -37783805 + B4A SINE B4 1 288 -4 6 1514 355 211 0 21 chr3 121816037 121816134 -37783649 + GA-rich Low_complexity Low_complexity 3 97 0 6 1514 475 322 98 50 chr3 121816222 121816821 -37782962 + L2a LINE L2 2762 3384 -42 6 1514 500 296 237 65 chr3 121817301 121817655 -37782128 - MLT1C LTR MaLR -8 459 45 6 1514 294 120 299 26 chr3 121817714 121817831 -37781952 - B2_Mm2 SINE B2 0 195 47 6 1514 1268 107 11 0 chr3 121817863 121818040 -37781743 - B2_Mm1t SINE B2 -14 179 1 6 1514 231 297 31 0 chr3 121818236 121818300 -37781483 - L2b LINE L2 -1 3374 3309 6 1514 229 318 0 0 chr3 121818306 121818369 -37781414 + ID4 SINE ID 3 65 -18 6 1514 326 325 48 53 chr3 121818398 121818555 -37781228 + B4 SINE B4 2 147 -77 6 1514 222 195 0 0 chr3 121818643 121818684 -37781099 + (CAAA)n Simple_repeat Simple_repeat 1 41 0 6 1514 775 249 29 11 chr3 121818774 121818949 -37780834 + B3A SINE B2 2 179 -19 6 1514 293 339 72 6 chr3 121819075 121819241 -37780542 + MIR SINE MIR 76 252 -10 6 1514 814 188 8 0 chr3 121819665 121819798 -37779985 + B1_Mur4 SINE Alu 1 134 -16 6 1514 1279 110 15 30 chr3 121819798 121819994 -37779789 + B2_Mm2 SINE B2 2 195 0 6 1514 221 0 0 33 chr3 121820513 121820543 -37779240 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 6 1514 246 32 0 0 chr3 121820550 121820581 -37779202 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 6 1514 385 228 128 70 chr3 121820657 121820668 -37779115 + CYRA11_Mm Unknown Y-chromosome 161 229 -388 6 1514 653 177 98 23 chr3 121820668 121820801 -37778982 - URR1B DNA MER1_type 0 225 83 6 1514 385 228 128 70 chr3 121820801 121820813 -37778970 + CYRA11_Mm Unknown Y-chromosome 230 325 -292 6 1514 213 39 0 0 chr3 121821123 121821149 -37778634 + (TA)n Simple_repeat Simple_repeat 2 27 0 6 1514 345 24 0 0 chr3 121822061 121822103 -37777680 + (TG)n Simple_repeat Simple_repeat 2 43 0 6 1514 935 113 45 0 chr3 121822411 121822544 -37777239 - B1_Mus1 SINE Alu -9 139 1 6 1514 370 354 39 43 chr3 121824178 121824385 -37775398 + MIRb SINE MIR 50 255 -13 6 1514 289 215 37 25 chr3 121826636 121826717 -37773066 + ID4 SINE ID 2 83 0 6 1514 1518 117 0 0 chr3 121826744 121826957 -37772826 + MTC LTR MaLR 1 213 -208 6 1514 1180 70 0 0 chr3 121826957 121827105 -37772678 - L1_Mm LINE L1 -230 5653 5506 6 1514 4812 35 0 3 chr3 121827105 121827670 -37772113 + L1Md_F3 LINE L1 6010 6572 -12 6 1514 1236 79 112 35 chr3 121827687 121827884 -37771899 + MTC LTR MaLR 210 421 0 6 1514 252 0 0 0 chr3 121827916 121827944 -37771839 + (CA)n Simple_repeat Simple_repeat 2 29 0 7 1514 227 277 100 60 chr3 121828277 121828377 -37771406 - LTR78 LTR ERV1 -345 959 856 7 1514 595 342 83 67 chr3 121828377 121828563 -37771220 - L1ME4a LINE L1 -55 6069 5883 7 1514 1061 200 42 0 chr3 121828563 121828753 -37771030 - B3 SINE B2 -18 198 1 7 1514 595 342 83 67 chr3 121828753 121829001 -37770782 - L1ME4a LINE L1 -242 5882 5628 7 1514 947 76 6 89 chr3 121829306 121829464 -37770319 + URR1A DNA MER1_type 82 226 0 7 1514 617 247 180 0 chr3 121830066 121830244 -37769539 + ID_B1 SINE B4 15 224 0 7 1514 187 319 36 65 chr3 121831650 121831781 -37768002 + MIR SINE MIR 81 216 -52 7 1514 708 294 39 0 chr3 121832738 121832918 -37766865 + B3 SINE B2 2 188 -28 7 1514 506 136 108 37 chr3 121833275 121833397 -37766386 + PB1D9 SINE Alu 1 149 -1 7 1514 415 160 20 0 chr3 121834176 121834253 -37765530 + PB1D10 SINE Alu 13 93 -56 7 1514 188 256 183 0 chr3 121834627 121834709 -37765074 - MIR SINE MIR -78 184 88 7 1514 304 318 55 18 chr3 121834858 121834967 -37764816 + PB1D7 SINE Alu 1 113 -7 7 1514 615 148 22 17 chr3 121834987 121835166 -37764617 + (CA)n Simple_repeat Simple_repeat 1 180 0 7 1514 198 160 0 0 chr3 121835192 121835242 -37764541 + GA-rich Low_complexity Low_complexity 1 50 0 7 1514 434 317 102 0 chr3 121837277 121837444 -37762339 + MIRb SINE MIR 40 223 -45 7 1514 266 349 80 27 chr3 121837527 121837677 -37762106 - MIRc SINE MIR -31 237 80 7 1514 1437 17 0 16 chr3 121838250 121838433 -37761350 + (TG)n Simple_repeat Simple_repeat 1 180 0 7 1514 424 216 0 0 chr3 121838712 121838786 -37760997 - ID_B1 SINE B4 0 224 151 7 1514 747 224 10 76 chr3 121838784 121838982 -37760801 - B2_Mm2 SINE B2 0 195 11 7 1514 826 270 0 12 chr3 121838980 121839145 -37760638 - ID_B1 SINE B4 -60 164 2 7 1514 3021 69 26 3 chr3 121839166 121839557 -37760226 - MTB LTR MaLR 0 400 1 7 1514 248 358 12 0 chr3 121844033 121844114 -37755669 - L2b LINE L2 -29 3346 3265 7 1514 735 147 259 0 chr3 121845048 121845218 -37754565 + B3 SINE B2 2 215 -1 7 1514 366 339 82 18 chr3 121846514 121846685 -37753098 + AmnSINE1 SINE SINE 95 276 -299 7 1514 536 232 61 0 chr3 121846668 121846767 -37753016 - B1_Mur2 SINE Alu -42 107 3 7 1514 794 163 89 0 chr3 121847435 121847558 -37752225 + B1_Mur4 SINE Alu 4 137 -13 7 1514 423 38 0 0 chr3 121847575 121847628 -37752155 + (GA)n Simple_repeat Simple_repeat 2 54 0 7 1514 982 116 27 27 chr3 121848024 121848174 -37751609 + B1_Mur4 SINE Alu 1 150 0 7 1514 522 270 26 0 chr3 121848221 121848336 -37751447 + PB1 SINE Alu 3 120 -7 7 1514 277 251 0 3 chr3 121848344 121848442 -37751341 + L1MA5 LINE L1 4499 4618 -1525 7 1514 2315 208 8 59 chr3 121848577 121849103 -37750680 - RLTR19 LTR ERVK 0 499 1 7 1514 230 213 15 76 chr3 121849158 121849224 -37750559 + ID2 SINE ID 7 68 -15 7 1514 433 247 11 0 chr3 121849166 121849255 -37750528 + RSINE1 SINE B4 13 102 -63 7 1514 25 31 0 0 chr3 121849343 121849375 -37750408 + AT_rich Low_complexity Low_complexity 1 32 0 7 1514 25 31 0 0 chr3 121849396 121849428 -37750355 + AT_rich Low_complexity Low_complexity 1 32 0 7 1514 914 314 100 6 chr3 121849452 121849933 -37749850 + L1MA5 LINE L1 5414 5939 -361 7 1514 186 43 0 0 chr3 121852226 121852249 -37747534 + (CCCCCA)n Simple_repeat Simple_repeat 1 23 0 7 1514 601 183 63 53 chr3 121852269 121852459 -37747324 - MER53 DNA hAT 0 193 2 7 1514 483 290 18 55 chr3 121852546 121852710 -37747073 + RSINE1 SINE B4 8 165 0 7 1514 2036 48 0 12 chr3 121852921 121853173 -37746610 + L1Md_F2 LINE L1 6329 6577 -5 7 1514 1088 50 58 0 chr3 121853212 121853351 -37746432 + B1_Mm SINE Alu 1 147 0 7 1514 1269 72 76 16 chr3 121853463 121853647 -37746136 - B2_Mm2 SINE B2 0 195 1 7 1514 647 222 29 15 chr3 121853657 121853794 -37745989 - B1_Mur1 SINE Alu -8 141 3 7 1514 828 274 13 54 chr3 121854182 121854406 -37745377 - B3 SINE B2 0 216 2 7 1514 851 188 6 0 chr3 121854894 121855070 -37744713 + CT-rich Low_complexity Low_complexity 4 180 0 7 1514 231 103 0 0 chr3 121855574 121855613 -37744170 + (TCTG)n Simple_repeat Simple_repeat 4 42 0 7 1514 582 308 71 33 chr3 121855704 121856040 -37743743 - L1MC4 LINE L1 -392 7650 7302 7 1514 841 332 73 8 chr3 121856083 121856608 -37743175 - L1MC4 LINE L1 -959 7083 6486 7 1514 1059 225 9 5 chr3 121856858 121857072 -37742711 + B3 SINE B2 1 215 -1 7 1514 196 334 67 35 chr3 121858710 121858836 -37740947 + MIRb SINE MIR 40 160 -48 7 1514 323 216 88 72 chr3 121859625 121859750 -37740033 + HAL1-3A_ME LINE L1 1934 2060 -798 7 1514 381 158 0 0 chr3 121860177 121860278 -37739505 + (TCTCTG)n Simple_repeat Simple_repeat 1 101 0 7 1514 598 34 0 102 chr3 121860321 121860517 -37739266 + (CTATG)n Simple_repeat Simple_repeat 1 176 0 7 1514 1270 54 0 0 chr3 121863586 121863734 -37736049 + B1_Mus1 SINE Alu 1 148 0 7 1514 188 346 109 29 chr3 121864027 121864164 -37735619 - L2 LINE L2 -453 2966 2819 7 1514 239 209 0 0 chr3 121864401 121864444 -37735339 - RMER30 DNA MER1_type -152 50 8 7 1514 442 275 63 63 chr3 121865987 121866058 -37733725 - MER33 DNA MER1_type -94 230 159 7 1514 3440 38 2 2 chr3 121866058 121866456 -37733327 - MTB LTR MaLR -2 398 1 7 1514 442 275 63 63 chr3 121866456 121866605 -37733178 - MER33 DNA MER1_type -166 158 10 7 1514 261 239 45 0 chr3 121867069 121867136 -37732647 - Charlie4z DNA MER1_type 0 167 98 7 1514 1981 229 173 103 chr3 121867498 121868286 -37731497 - RMER13A LTR ERVK 0 860 18 7 1514 227 260 55 97 chr3 121869822 121869918 -37729865 - L2a LINE L2 -32 3394 3291 7 1514 1000 207 111 46 chr3 121869924 121870266 -37729517 - RLTR12B LTR ERVK 0 568 216 7 1514 270 179 0 0 chr3 121870267 121870323 -37729460 + CT-rich Low_complexity Low_complexity 2 57 0 7 1514 920 209 55 96 chr3 121870323 121870602 -37729181 - RLTR12B LTR ERVK -230 298 57 7 1514 480 309 148 28 chr3 121870627 121871087 -37728696 + L1MC4a LINE L1 5619 6133 -1749 7 1514 3163 0 0 0 chr3 121871475 121871818 -37727965 + L1Md_T LINE L1 6240 6582 0 7 1514 356 286 7 80 chr3 121871897 121871966 -37727817 + L1MC4a LINE L1 6658 6719 -1323 7 1514 190 53 50 50 chr3 121871966 121872006 -37727777 + (TCTG)n Simple_repeat Simple_repeat 3 42 0 7 1514 356 286 7 80 chr3 121872006 121872073 -37727710 + L1MC4a LINE L1 6720 6784 -1258 7 1514 1287 161 86 17 chr3 121872077 121872311 -37727472 + MTC LTR MaLR 163 412 -9 7 1514 243 254 53 53 chr3 121872391 121872466 -37727317 + L2a LINE L2 3345 3419 -7 7 1514 237 200 28 28 chr3 121873368 121873440 -37726343 + (TTA)n Simple_repeat Simple_repeat 3 74 0 7 1514 360 143 0 0 chr3 121874947 121875017 -37724766 + (AGGGGG)n Simple_repeat Simple_repeat 1 70 0 7 1514 841 139 98 60 chr3 121875289 121875362 -37724421 + B2_Mm2 SINE B2 1 80 -115 7 1514 2132 94 326 0 chr3 121875362 121875733 -37724050 - MT2_Mm LTR ERVL 0 493 2 7 1514 841 139 98 60 chr3 121875733 121875842 -37723941 + B2_Mm2 SINE B2 81 190 -5 7 1514 335 181 0 14 chr3 121875842 121875915 -37723868 + GA-rich Low_complexity Low_complexity 1 72 0 7 1514 348 119 42 56 chr3 121875988 121876059 -37723724 + HAL1-3A_ME LINE L1 1943 2012 -846 7 1514 272 326 35 21 chr3 121876171 121876312 -37723471 - MLT1A1 LTR MaLR -265 143 1 7 1514 243 244 22 34 chr3 121877296 121877385 -37722398 + (TATG)n Simple_repeat Simple_repeat 1 88 0 7 1514 834 291 20 59 chr3 121877389 121877692 -37722091 - B4A SINE B4 0 292 2 7 1514 278 228 191 21 chr3 121877862 121877956 -37721827 - PB1D10 SINE Alu -7 110 1 7 1514 682 60 10 10 chr3 121877982 121878083 -37721700 + (TCTA)n Simple_repeat Simple_repeat 4 104 0 7 1514 243 0 0 0 chr3 121878093 121878120 -37721663 + (CA)n Simple_repeat Simple_repeat 2 28 0 7 1514 444 173 463 29 chr3 121878120 121878283 -37721500 - Lx9 LINE L1 -167 7477 7241 7 1514 286 167 82 14 chr3 121878282 121878355 -37721428 - L1MB3 LINE L1 -219 5964 5887 7 1514 276 215 136 15 chr3 121879354 121879420 -37720363 - RSINE1 SINE B4 -83 82 9 7 1514 290 26 26 0 chr3 121880323 121880362 -37719421 + (TTTG)n Simple_repeat Simple_repeat 3 42 0 7 1514 466 231 33 0 chr3 121880364 121880455 -37719328 - B1F1 SINE Alu -45 104 11 7 1514 758 184 0 49 chr3 121881480 121881623 -37718160 + B1_Mur4 SINE Alu 3 138 -12 7 1514 1024 86 65 0 chr3 121882099 121882238 -37717545 + B1_Mus1 SINE Alu 1 148 0 7 1514 1937 140 35 77 chr3 121883489 121883891 -37715892 - L1_Mur2 LINE L1 -130 5747 5363 7 1514 3997 169 44 82 chr3 121883883 121884908 -37714875 + Lx4B LINE L1 5864 6849 -151 7 1514 186 43 0 0 chr3 121884908 121884931 -37714852 + (TGGGGG)n Simple_repeat Simple_repeat 3 25 0 7 1514 2898 246 64 85 chr3 121884931 121885067 -37714716 + Lx4B LINE L1 6850 7000 0 7 1514 245 239 38 101 chr3 121885861 121885940 -37713843 - RSINE1 SINE B4 -61 104 31 7 1514 210 105 0 0 chr3 121887918 121887956 -37711827 + (G)n Simple_repeat Simple_repeat 1 38 0 7 1514 848 77 0 10 chr3 121888453 121888593 -37711190 - B1_Mus2 SINE Alu -7 141 5 7 1514 630 225 29 0 chr3 121888839 121888977 -37710806 + B1_Mus1 SINE Alu 2 143 -5 7 1514 263 175 17 17 chr3 121889131 121889144 -37710639 + ID_B1 SINE B4 81 135 -86 7 1514 298 95 0 0 chr3 121889144 121889186 -37710597 + B1_Mus2 SINE Alu 13 54 -93 7 1514 368 71 18 0 chr3 121889189 121889245 -37710538 + (GA)n Simple_repeat Simple_repeat 2 58 0 7 1514 356 338 88 0 chr3 121889433 121889581 -37710202 - MER45A DNA Tip100 -10 168 8 7 1514 782 155 49 14 chr3 121889737 121889881 -37709902 + B2_Mm2 SINE B2 15 163 -32 7 1514 234 0 0 0 chr3 121889882 121889908 -37709875 + (TAAA)n Simple_repeat Simple_repeat 4 29 0 7 1514 909 234 48 85 chr3 121890144 121890615 -37709168 + RMER2 LTR ERV1 1 549 -18 7 1514 1177 147 106 14 chr3 121890756 121890963 -37708820 + URR1A DNA MER1_type 1 226 0 7 1514 4376 64 11 9 chr3 121891328 121891879 -37707904 - L1_Mus1 LINE L1 -1 6566 6015 8 1514 311 284 105 43 chr3 121891997 121892159 -37707624 + MER57A-int LTR ERV1 2 173 -6014 8 1514 1061 95 0 13 chr3 121892339 121892488 -37707295 + B1_Mus1 SINE Alu 2 148 0 8 1514 366 195 0 0 chr3 121892488 121892565 -37707218 + A-rich Low_complexity Low_complexity 1 77 0 8 1514 569 184 0 10 chr3 121892614 121892718 -37707065 + PB1D9 SINE Alu 3 105 -15 8 1514 234 0 0 0 chr3 121892721 121892747 -37707036 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 8 1514 455 143 33 11 chr3 121892896 121892988 -37706795 - RLTR13B1 LTR ERVK 0 893 800 8 1514 322 136 15 29 chr3 121892992 121893060 -37706723 + RLTR13B1 LTR ERVK 827 893 0 8 1514 296 270 124 0 chr3 121893371 121893460 -37706323 + RSINE1 SINE B4 41 140 -25 8 1514 311 214 0 0 chr3 121893459 121893515 -37706268 - RSINE1 SINE B4 -40 125 70 8 1514 726 259 49 30 chr3 121893507 121893710 -37706073 - B4 SINE B4 -84 208 2 8 1514 1193 91 0 11 chr3 121893867 121894045 -37705738 + (TTTC)n Simple_repeat Simple_repeat 1 176 0 8 1514 474 33 0 0 chr3 121894045 121894104 -37705679 + (CA)n Simple_repeat Simple_repeat 1 60 0 8 1514 890 232 4 122 chr3 121895064 121895319 -37704464 + B4A SINE B4 68 292 0 8 1514 183 250 0 0 chr3 121895319 121895371 -37704412 + (CA)n Simple_repeat Simple_repeat 1 52 0 8 1514 213 259 0 0 chr3 121895567 121895621 -37704162 + C-rich Low_complexity Low_complexity 1 54 0 8 1514 1434 59 37 16 chr3 121896376 121896565 -37703218 - B2_Mm2 SINE B2 -1 194 2 8 189 1392 112 5 9 chr3 121896766 121896982 -37702801 + URR1A DNA MER1_type 1 215 -11 8 1515 27 49 0 0 chr3 121897614 121897655 -37702128 + AT_rich Low_complexity Low_complexity 1 41 0 8 1515 1474 78 16 0 chr3 121897710 121897901 -37701882 - B2_Mm2 SINE B2 0 195 2 8 1515 306 0 0 0 chr3 121898005 121898039 -37701744 + (A)n Simple_repeat Simple_repeat 1 34 0 8 1515 468 291 0 50 chr3 121898041 121898184 -37701599 - ID_B1 SINE B4 -12 212 80 8 1515 255 203 0 0 chr3 121899377 121899436 -37700347 + GA-rich Low_complexity Low_complexity 3 61 0 8 1515 229 318 0 29 chr3 121899448 121899516 -37700267 + G-rich Low_complexity Low_complexity 3 68 0 8 1515 249 309 23 38 chr3 121899665 121899796 -37699987 - Tigger1 DNA MER2_type -1290 1128 1000 8 1515 561 192 0 0 chr3 121900910 121901009 -37698774 - B1F SINE Alu -11 138 40 8 1515 920 143 14 0 chr3 121901106 121901195 -37698588 + B1_Mur3 SINE Alu 3 92 -57 8 1515 477 0 0 0 chr3 121901195 121901248 -37698535 + (GA)n Simple_repeat Simple_repeat 1 53 0 8 1515 920 143 14 0 chr3 121901248 121901298 -37698485 + B1_Mur3 SINE Alu 93 142 -7 8 1515 536 279 275 15 chr3 121901484 121901811 -37697972 + MER57C2 LTR ERV1 19 430 -4 8 1515 282 29 0 0 chr3 121902535 121902570 -37697213 + (CA)n Simple_repeat Simple_repeat 1 35 0 8 1515 205 29 29 29 chr3 121903437 121903472 -37696311 + (TTG)n Simple_repeat Simple_repeat 2 36 0 8 1515 254 72 83 12 chr3 121903790 121903874 -37695909 + A-rich Low_complexity Low_complexity 1 90 0 8 1515 989 249 111 38 chr3 121903884 121904306 -37695477 - RMER5 LTR ERV1 -15 519 67 8 1515 813 116 0 0 chr3 121904488 121904634 -37695149 + (TC)n Simple_repeat Simple_repeat 1 146 0 8 1515 620 250 66 33 chr3 121906111 121906192 -37693591 + RMER30 DNA MER1_type 13 100 -102 8 1515 243 0 0 0 chr3 121906192 121906219 -37693564 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 8 1515 620 250 66 33 chr3 121906219 121906319 -37693464 + RMER30 DNA MER1_type 101 200 -2 8 1515 786 35 0 109 chr3 121906484 121906612 -37693171 - B2_Mm2 SINE B2 -23 172 59 8 1515 270 133 94 62 chr3 121906619 121906683 -37693100 - RLTR42 LTR ERVK -22 217 152 8 1515 438 221 106 0 chr3 121907073 121907177 -37692606 + B1_Mur2 SINE Alu 3 117 -32 8 1515 261 0 0 0 chr3 121907177 121907206 -37692577 + (CA)n Simple_repeat Simple_repeat 2 30 0 8 1515 342 0 0 0 chr3 121907206 121907243 -37692540 + (GA)n Simple_repeat Simple_repeat 2 39 0 8 1515 3150 164 190 21 chr3 121907247 121907952 -37691831 + RMER19B LTR ERVK 79 902 0 8 1515 600 260 49 1 chr3 121908359 121908516 -37691267 + B3A SINE B2 5 166 -50 8 1515 314 297 0 41 chr3 121908540 121908663 -37691120 - RMER12 LTR ERVK -472 850 733 8 1515 1593 36 15 20 chr3 121909980 121910176 -37689607 - B2_Mm2 SINE B2 0 195 1 8 1515 946 143 0 0 chr3 121910286 121910426 -37689357 + B1_Mus2 SINE Alu 1 140 -7 8 1515 257 161 33 33 chr3 121910429 121910450 -37689333 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 8 1515 207 0 0 0 chr3 121910450 121910473 -37689310 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 8 1515 257 161 33 33 chr3 121910473 121910541 -37689242 + (CAAA)n Simple_repeat Simple_repeat 3 71 0 8 1515 423 0 0 0 chr3 121910542 121910589 -37689194 + (TAAAA)n Simple_repeat Simple_repeat 3 49 0 8 1515 804 122 0 0 chr3 121913027 121913150 -37686633 + B2_Mm2 SINE B2 1 123 -72 8 1515 23 33 0 0 chr3 121913150 121913180 -37686603 + AT_rich Low_complexity Low_complexity 1 30 0 8 1515 233 297 11 0 chr3 121913373 121913464 -37686319 - ORR1E LTR MaLR -214 145 54 8 1515 716 249 67 10 chr3 121914430 121914625 -37685158 + B4A SINE B4 10 215 -77 8 1515 353 275 73 0 chr3 121914749 121914858 -37684925 - PB1 SINE Alu -2 125 9 8 1515 204 267 0 0 chr3 121915318 121915363 -37684420 + C-rich Low_complexity Low_complexity 1 45 0 8 1515 599 225 17 0 chr3 121915366 121915486 -37684297 - B1_Mur1 SINE Alu -25 124 3 8 1515 26 30 0 0 chr3 121915545 121915578 -37684205 + AT_rich Low_complexity Low_complexity 1 33 0 8 1515 269 0 56 0 chr3 121915597 121915633 -37684150 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 8 1515 624 165 157 0 chr3 121915633 121915754 -37684029 - B1_Mur3 SINE Alu -9 140 1 8 1515 375 299 67 7 chr3 121915757 121915892 -37683891 - ID_B1 SINE B4 -1 223 81 8 1515 23 0 0 0 chr3 121915896 121915919 -37683864 + AT_rich Low_complexity Low_complexity 1 23 0 8 1515 1113 156 136 0 chr3 121916263 121916462 -37683321 - URR1A DNA MER1_type 0 226 1 8 1515 234 0 0 0 chr3 121918243 121918269 -37681514 + (A)n Simple_repeat Simple_repeat 1 26 0 8 1515 1193 54 0 0 chr3 121918743 121918890 -37680893 + B1_Mus1 SINE Alu 1 147 -1 8 1515 243 0 0 0 chr3 121918892 121918919 -37680864 + (TAAA)n Simple_repeat Simple_repeat 3 29 0 8 1515 203 0 37 0 chr3 121919178 121919205 -37680578 + (TTTTA)n Simple_repeat Simple_repeat 3 30 0 8 1515 1431 68 146 0 chr3 121919206 121919412 -37680371 - Lx3_Mus LINE L1 -9 7000 6765 8 1515 1431 242 84 37 chr3 121919439 121919984 -37679799 - L1M2 LINE L1 -1083 5060 4490 8 1515 308 321 36 36 chr3 121920001 121920140 -37679643 - B1_Mur2 SINE Alu -9 140 2 8 1515 446 269 30 65 chr3 121920140 121920371 -37679412 - L1M2 LINE L1 -1674 4469 4247 8 1515 396 0 0 0 chr3 121920763 121920807 -37678976 + (GA)n Simple_repeat Simple_repeat 2 45 0 8 1515 717 12 0 0 chr3 121920807 121920889 -37678894 + (GAA)n Simple_repeat Simple_repeat 3 84 0 8 1515 296 322 20 34 chr3 121921268 121921416 -37678367 - RSINE1 SINE B4 -19 146 1 8 1515 219 232 0 0 chr3 121922329 121922385 -37677398 + (TG)n Simple_repeat Simple_repeat 1 56 0 8 1515 892 249 24 0 chr3 121922699 121922904 -37676879 + B3 SINE B2 6 215 -1 8 1515 24 0 0 0 chr3 121922965 121922989 -37676794 + AT_rich Low_complexity Low_complexity 1 24 0 8 1515 333 100 0 0 chr3 121922995 121923045 -37676738 + (TG)n Simple_repeat Simple_repeat 2 51 0 8 1515 232 242 46 0 chr3 121923115 121923188 -37676595 - B3A SINE B2 -135 81 2 8 1515 221 235 43 29 chr3 121923449 121923519 -37676264 + B4A SINE B4 2 72 -220 8 1515 507 241 38 168 chr3 121924294 121924503 -37675280 + B3 SINE B2 6 192 -6 8 1515 272 224 14 29 chr3 121924926 121924995 -37674788 + RLTR25A LTR ERVK 506 573 -530 8 1515 673 126 10 0 chr3 121924939 121925042 -37674741 + B1_Mus2 SINE Alu 44 147 0 8 1515 1534 58 16 0 chr3 121925071 121925260 -37674523 + B2_Mm2 SINE B2 2 193 -2 8 1515 854 143 236 0 chr3 121925647 121925829 -37673954 + URR1B DNA MER1_type 1 225 0 8 1515 966 100 15 0 chr3 121925976 121926106 -37673677 + B1_Mus1 SINE Alu 1 132 -16 8 1515 216 0 0 0 chr3 121926148 121926172 -37673611 + (CA)n Simple_repeat Simple_repeat 1 24 0 8 1515 393 176 39 0 chr3 121928299 121928401 -37671382 + CT-rich Low_complexity Low_complexity 3 108 0 8 1515 1016 278 99 36 chr3 121930482 121930985 -37668798 + L1M2 LINE L1 4430 4964 -1179 8 1515 213 121 0 0 chr3 121931007 121931040 -37668743 + (GGA)n Simple_repeat Simple_repeat 3 35 0 8 1515 1033 84 0 0 chr3 121931045 121931188 -37668595 + B1_Mus1 SINE Alu 6 148 0 8 1515 366 183 0 0 chr3 121931188 121931259 -37668524 + GA-rich Low_complexity Low_complexity 1 71 0 8 1515 864 238 55 40 chr3 121931261 121931592 -37668191 + Lx9 LINE L1 4927 5302 -581 8 1515 2413 10 7 0 chr3 121931611 121931909 -37667874 - MTA_Mm LTR MaLR -96 300 1 8 1515 7783 19 2 11 chr3 121931909 121932911 -37666872 - MTA_Mm-int LTR MaLR 0 1098 106 8 1515 968 8 0 0 chr3 121934187 121934306 -37665477 - MTA_Mm-int LTR MaLR -979 119 1 8 1515 1706 32 5 0 chr3 121934306 121934524 -37665259 - MTA_Mm LTR MaLR 0 396 178 8 1515 7450 53 1 2 chr3 121934525 121935431 -37664352 - L1Md_F2 LINE L1 0 6582 5678 8 1515 1542 11 5 0 chr3 121935431 121935621 -37664162 - MTA_Mm LTR MaLR -205 191 1 8 1515 1714 16 5 0 chr3 121935644 121935836 -37663947 - B2_Mm1t SINE B2 0 193 1 8 1515 3281 31 21 0 chr3 121935836 121936015 -37663768 - MTA_Mm LTR MaLR -4 392 213 8 1515 216 0 0 0 chr3 121936015 121936039 -37663744 + (CTTG)n Simple_repeat Simple_repeat 2 25 0 8 1515 3281 31 21 0 chr3 121936039 121936243 -37663540 - MTA_Mm LTR MaLR -184 212 2 8 1515 1532 285 44 50 chr3 121936249 121936921 -37662862 + Lx9 LINE L1 5274 5974 -1670 8 1515 204 323 103 10 chr3 121937929 121938026 -37661757 + MER5B DNA MER1_type 68 173 -5 8 1515 400 250 28 0 chr3 121938552 121938660 -37661123 - PB1D10 SINE Alu -6 111 1 8 1515 304 194 75 11 chr3 121938737 121938831 -37660952 - RLTR25B LTR ERVK -10 1018 919 8 1515 437 160 47 167 chr3 121938840 121938990 -37660793 - RLTR25B LTR ERVK -277 751 620 8 1515 2150 168 23 80 chr3 121939381 121939866 -37659917 - RLTR25B LTR ERVK -571 457 1 8 1515 460 204 11 0 chr3 121940271 121940364 -37659419 - MurERV4_19-int LTR ERVK -5686 94 1 9 1515 1682 195 120 94 chr3 121940364 121940908 -37658875 - RMER19B LTR ERVK 0 902 138 9 1515 7551 153 131 8 chr3 121940947 121942851 -37656932 + Lx5 LINE L1 4906 7050 0 9 1515 1158 223 161 4 chr3 121943020 121943294 -37656489 + Lx5 LINE L1 6719 7035 -15 9 1515 344 294 27 20 chr3 121943298 121943444 -37656339 - RLTR42-int LTR ERVK -1118 4404 4258 9 1515 300 209 43 43 chr3 121943973 121944043 -37655740 - RLTR42-int LTR ERVK -1441 4081 4012 9 1515 22 0 0 0 chr3 121945315 121945337 -37654446 + AT_rich Low_complexity Low_complexity 1 22 0 9 1515 314 298 0 109 chr3 121946795 121946923 -37652860 - PB1D10 SINE Alu -1 116 3 9 1515 232 326 0 11 chr3 121947103 121947196 -37652587 - MIRb SINE MIR -3 265 174 9 1515 968 118 14 7 chr3 121947302 121947447 -37652336 - B1_Mur4 SINE Alu -3 147 2 9 1515 25 0 0 0 chr3 121948146 121948171 -37651612 + AT_rich Low_complexity Low_complexity 1 25 0 9 1515 39 88 0 0 chr3 121948426 121948528 -37651255 + GC_rich Low_complexity Low_complexity 1 102 0 9 1515 208 226 0 19 chr3 121948607 121948661 -37651122 + (CGG)n Simple_repeat Simple_repeat 1 53 0 9 1515 243 146 0 0 chr3 121948813 121948854 -37650929 + (CCCG)n Simple_repeat Simple_repeat 3 43 0 9 1515 349 308 15 15 chr3 121949420 121949552 -37650231 + ID_B1 SINE B4 66 197 -27 9 1515 585 181 17 8 chr3 121949439 121949556 -37650227 + B1_Mus1 SINE Alu 5 122 -26 9 1515 360 229 44 44 chr3 121949782 121949896 -37649887 + PB1D7 SINE Alu 1 114 -6 9 1515 249 149 30 44 chr3 121950703 121950777 -37649006 + PB1D9 SINE Alu 1 69 -48 9 1515 524 273 189 0 chr3 121950802 121951040 -37648743 - B4A SINE B4 -8 284 2 9 1515 190 213 85 0 chr3 121951042 121951089 -37648694 + L3 LINE CR1 4283 4333 -156 9 1515 427 247 96 20 chr3 121951210 121951396 -37648387 - B3 SINE B2 -2 193 1 9 1515 24 67 0 0 chr3 121951415 121951460 -37648323 + AT_rich Low_complexity Low_complexity 1 45 0 9 1515 1302 271 152 24 chr3 121951554 121952105 -37647678 - Lx7 LINE L1 -276 7420 6799 9 1515 1486 74 16 0 chr3 121952178 121952367 -37647416 - B2_Mm2 SINE B2 -2 193 2 9 1515 1618 43 0 0 chr3 121952398 121952583 -37647200 - B2_Mm1a SINE B2 -8 185 1 9 1515 680 255 37 25 chr3 121952683 121952928 -37646855 - L1_Mur3 LINE L1 -6561 1151 904 9 1515 1208 185 18 0 chr3 121952997 121953219 -37646564 - URR1A DNA MER1_type 0 226 1 9 1515 858 135 0 0 chr3 121953718 121953859 -37645924 + (TCC)n Simple_repeat Simple_repeat 3 143 0 9 1515 948 177 161 0 chr3 121954204 121954390 -37645393 - B3 SINE B2 0 216 1 9 1515 256 250 13 38 chr3 121954439 121954518 -37645265 - RMER30 DNA MER1_type -117 85 9 9 1515 776 122 54 61 chr3 121954679 121954827 -37644956 - B1_Mur4 SINE Alu -2 148 2 9 1515 1338 106 27 0 chr3 121955039 121955227 -37644556 - B2_Mm2 SINE B2 -1 194 2 9 1515 223 339 74 25 chr3 121956262 121956383 -37643400 + RSINE1 SINE B4 4 130 -35 9 1515 617 221 176 12 chr3 121956436 121956601 -37643182 + B3 SINE B2 1 192 -24 9 1515 23 33 0 0 chr3 121956702 121956732 -37643051 + AT_rich Low_complexity Low_complexity 1 30 0 9 1515 1165 27 6 76 chr3 121957006 121957164 -37642619 - B1_Mm SINE Alu 0 147 1 9 1515 216 268 67 53 chr3 121957219 121957294 -37642489 - ID_B1 SINE B4 -133 91 16 9 1515 1157 196 9 5 chr3 121957310 121957520 -37642263 - B3 SINE B2 -4 212 2 9 1515 649 219 63 24 chr3 121957606 121957812 -37641971 - B3 SINE B2 -1 215 2 9 1515 29 60 0 0 chr3 121957992 121958042 -37641741 + AT_rich Low_complexity Low_complexity 1 50 0 9 1515 712 210 21 14 chr3 121958129 121958274 -37641509 + B1_Mm SINE Alu 2 147 0 9 1515 614 245 36 7 chr3 121959005 121959145 -37640638 + B1F SINE Alu 1 144 -5 9 1515 2390 158 20 2 chr3 121959162 121959562 -37640221 - MTB_Mm LTR MaLR 0 407 1 9 1515 592 194 0 0 chr3 121960354 121960457 -37639326 + MERVL_2A-int LTR ERVL 3619 3721 -2040 9 1515 458 131 333 15 chr3 121960457 121960589 -37639194 - ORR1D1 LTR MaLR -200 174 1 9 1515 314 212 212 0 chr3 121960670 121960783 -37639000 - L1MC1 LINE L1 0 6333 6197 9 1515 963 253 9 0 chr3 121960785 121961018 -37638765 - L1MC1 LINE L1 -434 5899 5665 9 1515 2987 144 8 8 chr3 121961022 121961492 -37638291 - MERVL_2A-int LTR ERVL -2397 3364 2895 9 1515 644 210 140 42 chr3 121961527 121961741 -37638042 + ORR1C2 LTR MaLR 150 384 0 9 1515 1437 77 0 35 chr3 121962226 121962427 -37637356 - B2_Mm2 SINE B2 0 195 2 9 1515 338 275 95 45 chr3 121962909 121963154 -37636629 + MIRb SINE MIR 1 260 -2 9 1515 213 270 0 73 chr3 121963793 121963813 -37635970 - ID2 SINE ID 0 83 21 9 1515 243 229 0 0 chr3 121963813 121963861 -37635922 - tRNA-Ala-GCA tRNA tRNA -13 62 15 9 1515 265 211 42 0 chr3 121964035 121964106 -37635677 + B3 SINE B2 1 74 -142 9 1515 1385 45 43 32 chr3 121964297 121964482 -37635301 + B2_Mm2 SINE B2 1 187 -8 9 1515 198 71 0 0 chr3 121964964 121964992 -37634791 + (T)n Simple_repeat Simple_repeat 1 28 0 9 1515 1152 68 0 7 chr3 121964994 121965143 -37634640 - B1_Mus1 SINE Alu 0 148 1 9 1515 21 0 0 0 chr3 121966690 121966711 -37633072 + AT_rich Low_complexity Low_complexity 1 21 0 9 1515 992 255 33 60 chr3 121966714 121967014 -37632769 + B4A SINE B4 1 292 0 9 1515 365 316 63 5 chr3 121967226 121967433 -37632350 - L1MA4 LINE L1 -371 5929 5711 9 1515 303 162 0 0 chr3 121967452 121967488 -37632295 + T-rich Low_complexity Low_complexity 33 68 0 9 1515 748 75 225 0 chr3 121967488 121967608 -37632175 - B1_Mus1 SINE Alu 0 148 2 9 1515 303 162 0 0 chr3 121967608 121967639 -37632144 + T-rich Low_complexity Low_complexity 2 32 0 9 1515 234 271 14 0 chr3 121967889 121967959 -37631824 + ID4 SINE ID 2 72 -11 9 1515 252 0 0 0 chr3 121968178 121968206 -37631577 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 9 1515 1315 114 11 0 chr3 121968419 121968603 -37631180 + B2_Mm1t SINE B2 2 187 -6 9 1515 531 45 0 0 chr3 121968641 121968707 -37631076 + (TC)n Simple_repeat Simple_repeat 1 66 0 9 1515 343 289 90 15 chr3 121968858 121969058 -37630725 - ID_B1 SINE B4 -6 218 4 9 1515 1298 90 11 0 chr3 121971007 121971184 -37628599 + B2_Mm1a SINE B2 1 179 -14 9 1515 940 226 25 5 chr3 121971207 121971403 -37628380 + B3 SINE B2 2 201 -15 9 1515 815 151 42 21 chr3 121971739 121971881 -37627902 - B1_Mur2 SINE Alu 0 149 5 9 1515 1084 85 12 6 chr3 121972977 121973143 -37626640 + B2_Mm1t SINE B2 14 180 -13 9 1515 1740 142 88 9 chr3 121973167 121973508 -37626275 - RLTR9A LTR ERVK 0 368 1 9 1515 314 65 183 0 chr3 121973554 121973610 -37626173 + B2_Mm2 SINE B2 46 115 -83 9 1515 290 213 82 31 chr3 121973736 121973833 -37625950 + B4A SINE B4 1 102 -190 9 1515 259 283 69 29 chr3 121973866 121973968 -37625815 + B4A SINE B4 163 268 -24 9 1515 384 268 54 16 chr3 121974370 121974499 -37625284 + ORR1E LTR MaLR 1 134 -225 9 1515 281 293 0 35 chr3 121974746 121974831 -37624952 - ID4_ SINE ID 0 83 2 9 1515 297 0 0 0 chr3 121974878 121974911 -37624872 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 9 1515 1131 72 0 0 chr3 121974911 121975050 -37624733 - B1_Mus1 SINE Alu -9 139 1 9 1515 789 155 0 0 chr3 121975325 121975454 -37624329 - B1_Mus1 SINE Alu -10 138 10 9 1515 412 224 55 74 chr3 121975464 121975681 -37624102 + L1M4 LINE L1 5085 5297 -849 9 1515 1442 40 22 33 chr3 121975693 121975876 -37623907 + B2_Mm2 SINE B2 1 181 -14 9 1515 654 193 104 0 chr3 121976485 121976620 -37623163 + B1_Mur2 SINE Alu 1 149 0 9 1515 324 0 0 0 chr3 121976722 121976758 -37623025 + (A)n Simple_repeat Simple_repeat 1 36 0 9 1515 204 40 0 0 chr3 121979228 121979253 -37620530 + (TGG)n Simple_repeat Simple_repeat 2 26 0 9 1515 232 260 0 0 chr3 121979603 121979653 -37620130 + GA-rich Low_complexity Low_complexity 1 50 0 9 1515 251 109 109 0 chr3 121980196 121980242 -37619541 + RMER1A Other Other 980 1030 0 9 1515 2169 246 105 52 chr3 121980258 121981080 -37618703 - Lx8 LINE L1 -352 7121 6257 9 1515 4314 135 144 34 chr3 121981882 121982847 -37616936 - RLTR25A LTR ERVK 0 1103 33 9 1515 1329 71 43 16 chr3 121982944 121983131 -37616652 - B2_Mm2 SINE B2 -2 193 2 9 1515 329 258 36 66 chr3 121983156 121983293 -37616490 - RSINE1 SINE B4 -6 159 27 9 1515 255 170 0 0 chr3 121983359 121983406 -37616377 + CT-rich Low_complexity Low_complexity 2 48 0 9 1515 531 138 176 6 chr3 121983408 121983590 -37616193 - RMER17C LTR ERVK -136 274 62 9 1515 372 201 604 0 chr3 121984653 121984792 -37614991 - ID_B1 SINE B4 0 224 2 9 1515 299 321 0 45 chr3 121984824 121984912 -37614871 - PB1D10 SINE Alu -30 87 4 9 1515 586 282 63 0 chr3 121985030 121985204 -37614579 + B3A SINE B2 6 190 -8 9 1515 271 214 98 33 chr3 121986046 121986138 -37613645 - RLTR23 LTR ERV1 0 430 333 9 1515 528 59 67 0 chr3 121986556 121986644 -37613139 - B1_Mus2 SINE Alu -6 141 1 9 1515 183 42 0 0 chr3 121986654 121986678 -37613105 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 9 1515 990 31 0 0 chr3 121986678 121986806 -37612977 - B1_Mus2 SINE Alu -10 137 10 9 1515 608 37 37 0 chr3 121986989 121987071 -37612712 + B2_Mm2 SINE B2 47 131 -64 9 1515 423 119 34 45 chr3 121987601 121987689 -37612094 - PB1D9 SINE Alu 0 120 34 9 1515 1048 129 26 41 chr3 121988370 121988564 -37611219 + B2_Mm2 SINE B2 2 192 -3 9 1515 262 287 78 10 chr3 121989587 121989689 -37610094 + ORR1E LTR MaLR 240 348 -11 1 1515 413 294 0 31 chr3 121989829 121989916 -37609867 + ID_B1 SINE B4 99 182 -42 1 1515 1633 21 32 0 chr3 121989916 121990103 -37609680 - B2_Mm1t SINE B2 0 193 1 1 1515 413 294 0 31 chr3 121990103 121990145 -37609638 + ID_B1 SINE B4 183 224 0 1 1515 1881 182 38 5 chr3 121990191 121990561 -37609222 - RLTR14 LTR ERV1 0 382 1 1 1515 345 256 145 0 chr3 121990604 121990721 -37609062 - RSINE1 SINE B4 -28 137 4 1 1515 450 260 129 7 chr3 121990773 121990928 -37608855 - MER47B DNA MER2_type -10 408 235 1 1515 615 210 33 47 chr3 121991795 121991945 -37607838 - B1_Mur2 SINE Alu -1 148 1 1 1515 399 237 169 49 chr3 121992080 121992222 -37607561 + ID_B1 SINE B4 3 161 -63 1 1515 1661 26 5 0 chr3 121992248 121992437 -37607346 - B2_Mm1t SINE B2 -3 190 1 1 1515 258 321 0 12 chr3 121992843 121992925 -37606858 - PB1D10 SINE Alu -36 81 1 1 1515 435 38 0 0 chr3 121993135 121993188 -37606595 + (CA)n Simple_repeat Simple_repeat 1 53 0 1 1515 245 303 57 68 chr3 121994791 121994968 -37604815 + L1MC LINE L1 5501 5675 -2207 1 1515 228 281 47 35 chr3 121995351 121995436 -37604347 + MER5A DNA MER1_type 61 146 -43 1 1515 210 37 0 0 chr3 121995437 121995464 -37604319 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 1515 480 55 0 141 chr3 121995865 121995950 -37603833 - tRNA-Arg-AGA tRNA tRNA -3 73 1 1 1515 870 284 62 18 chr3 121997356 121997736 -37602047 - LTR40c LTR ERVL -23 496 40 1 1515 450 297 0 8 chr3 121999737 121999866 -37599917 + RSINE1 SINE B4 3 130 -35 1 1515 356 0 23 0 chr3 121999866 121999910 -37599873 + (CA)n Simple_repeat Simple_repeat 1 45 0 1 1515 321 206 0 29 chr3 122000259 122000329 -37599454 - U4 snRNA snRNA -68 77 10 1 1515 749 171 0 7 chr3 122000932 122001079 -37598704 + CT-rich Low_complexity Low_complexity 5 150 0 2 1515 480 208 0 59 chr3 122001079 122001181 -37598602 - B1_Mus1 SINE Alu -52 96 1 3 1515 1005 194 52 28 chr3 122001265 122001477 -37598306 - ID_B1 SINE B4 -7 217 1 4 1515 230 270 10 82 chr3 122001416 122001513 -37598270 - ZP3AR Satellite Satellite -111 101 12 5 1515 251 276 68 103 chr3 122001792 122001909 -37597874 - RSINE1 SINE B4 -51 114 2 6 1515 440 316 36 0 chr3 122001909 122002048 -37597735 - B1F1 SINE Alu -3 146 3 7 1515 380 267 267 0 chr3 122002126 122002298 -37597485 - MLT1F1 LTR MaLR -2 567 350 8 1515 209 284 22 43 chr3 122002859 122002951 -37596832 + (CATG)n Simple_repeat Simple_repeat 2 91 0 9 1515 306 0 0 0 chr3 122002961 122002995 -37596788 + (CA)n Simple_repeat Simple_repeat 2 35 0 1 1515 249 338 59 93 chr3 122003043 122003318 -37596465 + L2b LINE L2 3106 3369 -18 1 1515 214 224 0 49 chr3 122003743 122003804 -37595979 + CT-rich Low_complexity Low_complexity 4 61 0 1 1515 289 215 31 0 chr3 122004386 122004451 -37595332 - ID2 SINE ID -10 73 7 1 1515 949 106 28 0 chr3 122005268 122005488 -37594295 + (TATG)n Simple_repeat Simple_repeat 1 226 0 1 1515 180 237 0 0 chr3 122005734 122005772 -37594011 - L2c LINE L2 0 3387 3350 1 1515 369 0 0 0 chr3 122005811 122005852 -37593931 + (TATG)n Simple_repeat Simple_repeat 2 42 0 1 1515 217 286 35 35 chr3 122005858 122005916 -37593867 - ID SINE ID -138 86 29 1 1515 229 310 35 0 chr3 122005867 122005925 -37593858 - ID4 SINE ID -7 76 17 1 1515 330 254 150 32 chr3 122006979 122007166 -37592617 + RMER15 LTR ERVL 366 574 -1 1 1515 1162 89 0 0 chr3 122007280 122007426 -37592357 + B1_Mus2 SINE Alu 2 147 0 2 1515 217 0 0 57 chr3 122007432 122007467 -37592316 + (CAAAC)n Simple_repeat Simple_repeat 2 34 0 2 1515 267 198 28 142 chr3 122007468 122007574 -37592209 + MT2B LTR ERVL 164 257 -344 2 1515 871 103 14 35 chr3 122007479 122007620 -37592163 + B1_Mur3 SINE Alu 12 149 0 2 1515 182 279 122 37 chr3 122008233 122008315 -37591468 + MIRb SINE MIR 174 262 -6 2 1515 279 273 26 0 chr3 122008496 122008573 -37591210 - ID4_ SINE ID 0 83 5 2 1515 460 323 50 65 chr3 122009026 122009225 -37590558 + MER21B LTR ERV1 43 238 -625 2 1515 769 284 136 36 chr3 122010045 122010377 -37589406 + MER21B LTR ERV1 420 784 -79 2 1515 246 158 0 0 chr3 122010545 122010583 -37589200 + URR1B DNA MER1_type 1 38 -187 2 1515 970 182 0 6 chr3 122010647 122010818 -37588965 + URR1B DNA MER1_type 38 207 -18 2 1515 409 139 53 24 chr3 122011255 122011425 -37588358 + (TGGA)n Simple_repeat Simple_repeat 2 176 0 2 1515 230 95 60 77 chr3 122011441 122011623 -37588160 + (TGGA)n Simple_repeat Simple_repeat 2 180 0 2 1515 281 169 17 0 chr3 122011905 122011964 -37587819 + GA-rich Low_complexity Low_complexity 2 61 0 2 1515 204 312 20 0 chr3 122012697 122012765 -37587018 - L2b LINE L2 -41 3385 3266 3 1515 21 0 0 0 chr3 122013129 122013150 -37586633 + AT_rich Low_complexity Low_complexity 1 21 0 3 1515 21 0 0 0 chr3 122013168 122013189 -37586594 + AT_rich Low_complexity Low_complexity 1 21 0 3 1515 319 202 126 24 chr3 122013189 122013316 -37586467 - Lx4B LINE L1 -6 7052 6913 3 1515 576 0 0 0 chr3 122013839 122013903 -37585880 + (GGA)n Simple_repeat Simple_repeat 2 65 0 3 1515 231 276 79 0 chr3 122014012 122014088 -37585695 + MIR SINE MIR 179 260 -2 3 1515 1206 28 7 40 chr3 122014095 122014246 -37585537 + B1_Mm SINE Alu 2 147 0 3 1515 1243 41 0 20 chr3 122014288 122014438 -37585345 + B1_Mus2 SINE Alu 1 147 0 3 1515 230 354 146 23 chr3 122014992 122015122 -37584661 - MIRc SINE MIR -39 229 84 3 1515 267 304 152 88 chr3 122015304 122015849 -37583934 + L1MC4 LINE L1 7462 8041 -1 3 1515 209 292 15 44 chr3 122016395 122016463 -37583320 - MER5A DNA MER1_type -69 120 55 4 1515 1482 45 17 0 chr3 122016589 122016766 -37583017 + B2_Mm2 SINE B2 2 181 -14 4 1515 204 125 0 0 chr3 122017320 122017352 -37582431 + (CATATA)n Simple_repeat Simple_repeat 3 34 0 4 1515 210 196 109 0 chr3 122017396 122017442 -37582341 + B1F SINE Alu 94 144 -5 4 1515 244 323 92 89 chr3 122017479 122017795 -37581988 + ORR1D2 LTR MaLR 33 349 -21 4 1515 270 176 0 0 chr3 122018044 122018095 -37581688 + (TA)n Simple_repeat Simple_repeat 2 52 0 4 1515 339 392 27 0 chr3 122018516 122018664 -37581119 - MLT1G3 LTR MaLR -364 231 80 4 1515 1701 36 0 0 chr3 122018670 122018863 -37580920 - B2_Mm1t SINE B2 0 193 1 4 1515 235 297 132 42 chr3 122019122 122019266 -37580517 + MER102b DNA MER1_type 126 282 -59 4 1515 420 97 0 0 chr3 122019332 122019394 -37580389 + (TC)n Simple_repeat Simple_repeat 2 63 0 4 1515 279 0 0 0 chr3 122020409 122020440 -37579343 + (GCTG)n Simple_repeat Simple_repeat 2 32 0 5 1515 627 305 125 32 chr3 122020466 122020747 -37579036 - MLT1G1 LTR MaLR -269 310 4 5 1515 25 0 0 0 chr3 122020771 122020796 -37578987 + AT_rich Low_complexity Low_complexity 1 25 0 5 1515 495 294 0 49 chr3 122020828 122020971 -37578812 - ID_B1 SINE B4 -3 221 86 5 1515 348 298 83 42 chr3 122020989 122021180 -37578603 - L1ME3B LINE L1 -345 5828 5628 5 1515 313 302 83 41 chr3 122021382 122021503 -37578280 - L1ME3B LINE L1 -585 5655 5530 5 1515 186 240 0 0 chr3 122021686 122021736 -37578047 + (TA)n Simple_repeat Simple_repeat 2 51 0 5 1515 260 49 49 0 chr3 122021747 122021788 -37577995 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 5 1515 568 183 0 0 chr3 122021791 122021884 -37577899 - B1_Mur1 SINE Alu -14 135 43 5 1515 245 218 320 0 chr3 122021885 122021963 -37577820 - PB1D10 SINE Alu -1 116 14 5 1515 387 240 30 46 chr3 122021984 122022115 -37577668 - L1ME3B LINE L1 -853 5293 5165 5 1515 413 299 96 0 chr3 122023543 122023710 -37576073 + MER58B DNA MER1_type 54 236 -105 5 1515 936 178 121 61 chr3 122024125 122024323 -37575460 + B3 SINE B2 7 216 0 6 1515 230 343 111 0 chr3 122024335 122024443 -37575340 - PB1D9 SINE Alu 0 120 1 6 1515 282 56 0 0 chr3 122025754 122025790 -37573993 + (TGAA)n Simple_repeat Simple_repeat 4 39 0 6 1515 187 171 73 0 chr3 122026489 122026530 -37573253 + MIRb SINE MIR 206 249 -19 6 1515 1386 66 55 0 chr3 122026680 122026862 -37572921 + B2_Mm1t SINE B2 2 193 0 6 1515 361 342 164 30 chr3 122027361 122027593 -37572190 - L1MC4 LINE L1 -18 8024 7762 6 189 344 298 87 33 chr3 122027997 122028181 -37571602 - L1MC4 LINE L1 -309 7652 7459 6 1516 751 261 118 0 chr3 122028258 122028453 -37571330 - ID_B1 SINE B4 -5 219 2 6 1516 511 250 0 0 chr3 122028508 122028608 -37571175 + B1F SINE Alu 5 104 -45 6 1516 434 201 14 4 chr3 122028997 122029097 -37570686 + PB1D10 SINE Alu 18 120 -29 6 1516 27 29 0 0 chr3 122029097 122029131 -37570652 + AT_rich Low_complexity Low_complexity 1 34 0 6 1516 279 0 0 0 chr3 122029153 122029184 -37570599 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 7 1516 569 291 64 30 chr3 122029633 122029867 -37569916 - L1MA6 LINE L1 -4 6296 6055 7 1516 315 71 0 0 chr3 122030140 122030182 -37569601 + (TG)n Simple_repeat Simple_repeat 2 43 0 7 1516 381 244 204 44 chr3 122030272 122030312 -37569471 - RSINE1 SINE B4 -4 161 125 7 1516 3680 59 42 0 chr3 122030312 122030768 -37569015 - MT2C_Mm LTR ERVL 0 475 1 7 1516 381 244 204 44 chr3 122030768 122030864 -37568919 - RSINE1 SINE B4 -41 124 3 7 1516 557 155 57 28 chr3 122032977 122033083 -37566700 + ID_B1 SINE B4 116 224 0 7 1516 324 0 0 0 chr3 122033374 122033410 -37566373 + (CA)n Simple_repeat Simple_repeat 1 36 0 7 1516 351 307 0 0 chr3 122034225 122034313 -37565470 + 5S rRNA rRNA 1 88 -33 7 1516 1033 174 55 0 chr3 122034382 122034583 -37565200 + B3 SINE B2 1 212 -4 7 1516 27 49 0 0 chr3 122034584 122034625 -37565158 + AT_rich Low_complexity Low_complexity 1 41 0 7 1516 920 214 117 30 chr3 122034859 122035308 -37564475 - RMER10B LTR ERVL -5 393 1 8 1516 387 0 0 0 chr3 122036733 122036776 -37563007 + (CA)n Simple_repeat Simple_repeat 2 44 0 8 1516 522 31 0 0 chr3 122037936 122038000 -37561783 + (TC)n Simple_repeat Simple_repeat 1 64 0 8 1516 764 123 9 0 chr3 122038004 122038118 -37561665 - B1_Mus1 SINE Alu -32 116 2 8 1516 517 258 60 65 chr3 122038435 122038634 -37561149 - B3A SINE B2 0 198 1 8 1516 295 299 81 0 chr3 122038859 122038946 -37560837 + RSINE1 SINE B4 4 97 -68 8 1516 279 0 0 0 chr3 122038970 122039001 -37560782 + (CA)n Simple_repeat Simple_repeat 2 32 0 8 1516 189 0 0 0 chr3 122039519 122039540 -37560243 + (TC)n Simple_repeat Simple_repeat 2 22 0 8 1516 1042 73 0 35 chr3 122039540 122039681 -37560102 - B1_Mus1 SINE Alu -12 136 1 8 1516 781 98 18 0 chr3 122039716 122039828 -37559955 + B2_Mm1t SINE B2 1 114 -79 8 1516 594 226 0 0 chr3 122039838 122039944 -37559839 - PB1D9 SINE Alu -13 107 2 9 1516 956 144 74 42 chr3 122040540 122040611 -37559172 + B2_Mm2 SINE B2 1 74 -121 9 1516 405 0 0 0 chr3 122040611 122040656 -37559127 + (TAA)n Simple_repeat Simple_repeat 2 46 0 9 1516 956 144 74 42 chr3 122040656 122040773 -37559010 + B2_Mm2 SINE B2 75 194 -1 9 1516 429 288 178 72 chr3 122042029 122042180 -37557603 + MER63A DNA AcHobo 12 182 -28 9 1516 570 242 86 0 chr3 122042180 122042308 -37557475 + B1F SINE Alu 2 140 -9 9 1516 429 288 178 72 chr3 122042308 122042336 -37557447 + MER63A DNA AcHobo 183 210 0 9 1516 405 0 0 0 chr3 122042381 122042426 -37557357 + (GA)n Simple_repeat Simple_repeat 2 46 0 9 1516 31 0 0 0 chr3 122042527 122042558 -37557225 + AT_rich Low_complexity Low_complexity 1 31 0 9 1516 25 31 0 0 chr3 122042805 122042837 -37556946 + AT_rich Low_complexity Low_complexity 1 32 0 9 1516 1635 175 65 209 chr3 122044471 122044963 -37554820 + MTC LTR MaLR 1 421 0 9 1516 500 319 35 29 chr3 122045644 122045818 -37553965 + B3A SINE B2 38 212 -4 9 1516 585 40 0 0 chr3 122047757 122047833 -37551950 + (TG)n Simple_repeat Simple_repeat 2 77 0 1 1516 278 254 0 0 chr3 122047911 122047970 -37551813 - B1F1 SINE Alu -87 62 4 1 1516 218 341 116 7 chr3 122048268 122048405 -37551378 + MIR SINE MIR 16 167 -101 1 1516 254 286 63 25 chr3 122048447 122048526 -37551257 - MTE2a LTR MaLR -18 361 280 1 1516 237 293 64 16 chr3 122048748 122048873 -37550910 - MLT1A1 LTR MaLR -274 134 4 1 1516 199 218 164 0 chr3 122048887 122048942 -37550841 + MIRc SINE MIR 205 268 0 1 1516 2464 141 24 3 chr3 122049609 122049987 -37549796 + ORR1B1 LTR MaLR 1 386 -8 1 1516 452 308 18 54 chr3 122051267 122051435 -37548348 + RSINE1 SINE B4 2 163 -2 1 1516 469 286 108 45 chr3 122052317 122052565 -37547218 + MLT1D LTR MaLR 43 314 -153 1 1516 237 226 19 0 chr3 122052773 122052826 -37546957 + ORR1D2 LTR MaLR 1 54 -367 1 1516 889 153 130 50 chr3 122052847 122053047 -37546736 + URR1A DNA MER1_type 1 216 -10 1 1516 1971 184 81 3 chr3 122053098 122053479 -37546304 - MTD LTR MaLR -8 411 1 1 1516 249 255 0 19 chr3 122053493 122053545 -37546238 + ORR1D2 LTR MaLR 48 98 -281 1 1516 279 312 55 101 chr3 122053611 122053903 -37545880 + ORR1D2 LTR MaLR 75 363 -11 1 1516 338 418 23 14 chr3 122054140 122054361 -37545422 - L2 LINE L2 -528 2891 2669 1 1516 297 370 42 84 chr3 122054510 122054749 -37545034 - MLT1N2 LTR MaLR -229 333 105 1 1516 226 0 59 0 chr3 122054772 122054806 -37544977 + (TTTTG)n Simple_repeat Simple_repeat 2 37 0 1 1516 1116 53 30 0 chr3 122054806 122054939 -37544844 - B1_Mm SINE Alu -10 137 1 1 1516 4763 41 0 0 chr3 122054955 122055510 -37544273 - L1Md_T LINE L1 0 6582 6028 1 1516 1014 269 64 8 chr3 122056778 122056971 -37542812 - B4 SINE B4 -10 282 89 1 1516 180 0 0 0 chr3 122056971 122056991 -37542792 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 1 1516 1014 269 64 8 chr3 122056991 122057063 -37542720 - B4 SINE B4 -204 88 3 1 1516 4661 78 24 8 chr3 122057764 122058383 -37541400 - Lx LINE L1 -3 6651 6023 1 1516 867 197 77 17 chr3 122058754 122058935 -37540848 - B3 SINE B2 -24 192 1 1 1516 1238 251 18 119 chr3 122060038 122060485 -37539298 + MTD LTR MaLR 4 405 -14 1 1516 498 280 93 96 chr3 122060499 122060564 -37539219 - MLT1A0 LTR MaLR -1 364 307 1 1516 428 292 9 0 chr3 122060564 122060677 -37539106 + PB1D10 SINE Alu 2 115 -2 1 1516 498 280 93 96 chr3 122060677 122060817 -37538966 - MLT1A0 LTR MaLR -59 306 157 1 1516 1418 89 21 0 chr3 122060817 122061008 -37538775 - B2_Mm2 SINE B2 0 195 1 1 1516 498 280 93 96 chr3 122061008 122061133 -37538650 - MLT1A0 LTR MaLR -209 156 35 1 1516 220 226 0 88 chr3 122061120 122061188 -37538595 - ID2 SINE ID -20 63 2 1 1516 373 309 245 35 chr3 122061416 122061698 -37538085 + MLT1F LTR MaLR 195 535 -13 1 1516 897 309 46 21 chr3 122061815 122062099 -37537684 - B4 SINE B4 -1 291 1 1 1516 221 243 13 103 chr3 122063105 122063183 -37536600 + MIRc SINE MIR 39 109 -159 1 1516 1213 186 22 18 chr3 122063213 122063437 -37536346 - URR1A DNA MER1_type 0 226 2 1 1516 527 332 116 10 chr3 122063473 122063680 -37536103 - MIR SINE MIR -1 261 33 1 1516 581 258 7 22 chr3 122064644 122064779 -37535004 - MER45A DNA Tip100 -45 133 1 1 1516 561 125 0 0 chr3 122065351 122065439 -37534344 + (CA)n Simple_repeat Simple_repeat 2 89 0 1 1516 461 305 75 0 chr3 122065503 122065677 -37534106 + MER53 DNA hAT 1 187 -6 1 1516 600 14 0 0 chr3 122065971 122066040 -37533743 + (GGA)n Simple_repeat Simple_repeat 3 71 0 1 1516 251 221 0 29 chr3 122066469 122066539 -37533244 - MLT1A1 LTR MaLR -4 463 396 1 1516 361 238 46 37 chr3 122066572 122066681 -37533102 - MLT1A1 LTR MaLR -30 378 269 1 1516 254 344 70 35 chr3 122066888 122067087 -37532696 - MLT1C LTR MaLR -41 426 221 1 1516 26 0 0 0 chr3 122067089 122067115 -37532668 + AT_rich Low_complexity Low_complexity 1 26 0 1 1516 339 262 47 0 chr3 122067115 122067222 -37532561 - Lx7 LINE L1 0 7696 7585 1 1516 252 77 0 0 chr3 122067260 122067299 -37532484 + (CAGA)n Simple_repeat Simple_repeat 4 42 0 1 1516 453 246 17 0 chr3 122067380 122067498 -37532285 + Lx7 LINE L1 7236 7355 -341 1 1516 429 20 0 0 chr3 122067677 122067727 -37532056 + (TG)n Simple_repeat Simple_repeat 2 51 0 1 1516 225 323 131 29 chr3 122067932 122067972 -37531811 - MER5A DNA MER1_type 0 189 147 1 1516 1238 139 41 14 chr3 122067972 122068191 -37531592 + URR1A DNA MER1_type 2 226 0 1 1516 225 323 131 29 chr3 122068191 122068287 -37531496 - MER5A DNA MER1_type -43 146 39 1 1516 207 69 0 0 chr3 122068896 122068925 -37530858 + (TTG)n Simple_repeat Simple_repeat 1 29 0 1 1516 790 213 39 15 chr3 122068925 122069130 -37530653 - Lx7 LINE L1 -8 7688 7479 1 1516 4369 197 39 19 chr3 122069134 122070029 -37529754 - Lx7 LINE L1 -693 7003 6091 1 1516 2375 163 11 0 chr3 122070032 122070413 -37529370 - ORR1B1 LTR MaLR -8 386 2 1 1516 847 225 39 32 chr3 122070413 122070697 -37529086 - Lx7 LINE L1 -1615 6081 5796 1 1516 1847 227 86 23 chr3 122070695 122071255 -37528528 - L1_Mur2 LINE L1 -170 5707 5113 1 1516 557 312 0 7 chr3 122071830 122071972 -37527811 + ID_B1 SINE B4 84 224 0 1 1516 1084 148 6 0 chr3 122072177 122072346 -37527437 + RLTR17 LTR ERVK 199 368 -324 1 1516 882 316 44 93 chr3 122072352 122072515 -37527268 - MTD LTR MaLR -30 389 256 1 1516 495 0 0 0 chr3 122072515 122072570 -37527213 + (TCTA)n Simple_repeat Simple_repeat 4 58 0 1 1516 882 316 44 93 chr3 122072570 122072613 -37527170 - MTD LTR MaLR -164 255 214 1 1516 189 0 0 0 chr3 122072613 122072634 -37527149 + (CAGG)n Simple_repeat Simple_repeat 4 24 0 1 1516 882 316 44 93 chr3 122072634 122072834 -37526949 - MTD LTR MaLR -206 213 2 1 1516 300 392 91 8 chr3 122072891 122073156 -37526627 - L2b LINE L2 -10 3365 3079 1 1516 197 65 32 0 chr3 122074275 122074306 -37525477 + (TA)n Simple_repeat Simple_repeat 2 33 0 1 1516 229 254 45 0 chr3 122074306 122074373 -37525410 - L1MD3 LINE L1 -48 7947 7878 1 1516 349 254 79 36 chr3 122074427 122074566 -37525217 - L1MC3 LINE L1 -218 7567 7423 1 1516 658 336 83 9 chr3 122074641 122074857 -37524926 - B4A SINE B4 -2 290 59 1 1516 351 311 102 21 chr3 122074896 122075179 -37524604 - L1MC3 LINE L1 -410 7375 7070 1 1516 561 307 43 106 chr3 122076397 122076699 -37523084 - MLT1B LTR MaLR -42 348 66 1 1516 408 286 157 8 chr3 122076785 122076919 -37522864 - RSINE1 SINE B4 -9 156 3 1 1516 1203 68 0 13 chr3 122077069 122077219 -37522564 + B1_Mus1 SINE Alu 1 148 0 1 1516 291 190 139 7 chr3 122077295 122077377 -37522406 + MTE2b LTR MaLR 1 92 -287 1 1516 207 100 0 0 chr3 122077556 122077586 -37522197 + (TTCC)n Simple_repeat Simple_repeat 4 33 0 1 1516 726 203 0 0 chr3 122077584 122077737 -37522046 + CT-rich Low_complexity Low_complexity 5 157 0 1 1516 1302 101 0 11 chr3 122077737 122077917 -37521866 - B2_Mm2 SINE B2 -16 179 2 1 1516 420 20 0 0 chr3 122078782 122078831 -37520952 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 1516 1103 280 57 66 chr3 122080911 122081439 -37518344 - Ricksha_c DNA MuDR -1170 878 356 1 1516 261 0 0 0 chr3 122081474 122081503 -37518280 + (ATTG)n Simple_repeat Simple_repeat 3 31 0 1 1516 660 176 79 8 chr3 122081503 122081624 -37518159 - B1_Mur3 SINE Alu -13 136 6 1 1516 1308 93 55 0 chr3 122082439 122082621 -37517162 - B2_Mm2 SINE B2 0 195 4 1 1516 722 272 45 165 chr3 122083121 122083496 -37516287 + ORR1E LTR MaLR 23 352 -7 1 1516 262 306 112 94 chr3 122083536 122083760 -37516023 + LTR16C LTR ERVL 262 489 0 1 1516 255 266 24 60 chr3 122084123 122084207 -37515576 + ID4 SINE ID 2 82 -1 1 1516 276 241 0 0 chr3 122085120 122085174 -37514609 + L2a LINE L2 3370 3423 -3 1 1516 628 263 22 0 chr3 122085310 122085447 -37514336 + RSINE1 SINE B4 4 143 -22 1 1516 286 271 71 0 chr3 122085495 122085565 -37514218 + ID4 SINE ID 1 75 -8 1 1516 321 298 100 23 chr3 122085971 122086129 -37513654 - L2a LINE L2 -12 3414 3229 1 1516 1232 88 0 0 chr3 122086132 122086292 -37513491 + B2_Mm2 SINE B2 1 160 -35 1 1516 198 0 0 0 chr3 122086293 122086315 -37513468 + (TAAA)n Simple_repeat Simple_repeat 1 22 0 1 1516 23 0 0 0 chr3 122086505 122086528 -37513255 + AT_rich Low_complexity Low_complexity 1 23 0 1 1516 560 284 107 10 chr3 122086534 122086730 -37513053 + B3 SINE B2 1 215 -1 1 1516 391 244 12 0 chr3 122086734 122086820 -37512963 + B3 SINE B2 130 216 0 1 1516 709 266 60 33 chr3 122087704 122087887 -37511896 + ID_B1 SINE B4 25 212 -12 1 1516 495 0 0 0 chr3 122087923 122087978 -37511805 + (CA)n Simple_repeat Simple_repeat 2 56 0 1 1516 333 0 0 0 chr3 122087978 122088014 -37511769 + (TA)n Simple_repeat Simple_repeat 1 37 0 1 1516 260 336 58 0 chr3 122088045 122088149 -37511634 - MER3 DNA MER1_type -98 111 2 1 1516 393 365 36 23 chr3 122088274 122088493 -37511290 + MIRb SINE MIR 27 248 -20 1 1516 587 342 63 80 chr3 122089049 122089462 -37510321 + MLT1H LTR MaLR 144 549 0 1 1516 1106 304 108 34 chr3 122089572 122090073 -37509710 + MLT1F LTR MaLR 9 546 -2 1 1516 297 214 0 0 chr3 122090847 122090917 -37508866 + L1_Mur3 LINE L1 239 308 -7404 1 1516 2819 172 33 4 chr3 122090931 122091444 -37508339 + Lx7 LINE L1 6823 7350 -346 1 1516 2790 47 8 24 chr3 122091457 122091827 -37507956 - L1_Mus1 LINE L1 -98 6469 6106 1 1516 338 242 29 57 chr3 122092827 122092932 -37506851 - MLT1A1 LTR MaLR 0 408 307 1 1516 1549 36 0 63 chr3 122093650 122093856 -37505927 - B2_Mm1a SINE B2 0 193 1 1 1516 466 282 103 0 chr3 122095443 122095599 -37504184 - B3A SINE B2 -20 178 7 1 1516 1783 146 16 102 chr3 122095841 122096464 -37503319 - RMER17C LTR ERVK -517 441 16 1 1516 546 136 0 19 chr3 122096453 122096558 -37503225 - RMER17B LTR ERVK -678 280 178 1 1516 498 273 30 18 chr3 122096558 122096722 -37503061 - MIR SINE MIR -80 182 17 1 1516 196 303 18 100 chr3 122097398 122097508 -37502275 - MIR SINE MIR -66 196 96 1 1516 365 321 18 0 chr3 122097526 122097638 -37502145 + PB1D7 SINE Alu 1 114 -6 1 1516 375 41 0 0 chr3 122097639 122097688 -37502095 + (CCAA)n Simple_repeat Simple_repeat 3 51 0 2 1516 355 205 116 16 chr3 122097865 122097994 -37501789 - B1F SINE Alu -7 142 1 2 1516 1572 168 134 3 chr3 122098813 122099105 -37500678 - ORR1C1 LTR MaLR 0 378 49 2 1516 4361 187 132 29 chr3 122099189 122100482 -37499301 - RMER1A Other Other -5 1025 1 2 1516 2330 78 7 7 chr3 122100763 122101071 -37498712 - L1_Mus3 LINE L1 -5 6633 6326 2 1516 2943 74 1 1 chr3 122101071 122101478 -37498305 + L1_Mus3 LINE L1 5949 6706 -352 2 1516 441 0 0 0 chr3 122101611 122101660 -37498123 + (TG)n Simple_repeat Simple_repeat 1 49 0 2 1516 1048 127 63 47 chr3 122101811 122102001 -37497782 + B2_Mm2 SINE B2 3 195 0 2 1516 342 115 0 0 chr3 122102094 122102146 -37497637 + (CA)n Simple_repeat Simple_repeat 1 52 0 2 1516 386 274 9 47 chr3 122102190 122102297 -37497486 + RSINE1 SINE B4 3 105 -60 2 1516 951 179 120 0 chr3 122102290 122102474 -37497309 + URR1B DNA MER1_type 20 225 0 2 1516 246 239 0 69 chr3 122102474 122102527 -37497256 + RSINE1 SINE B4 104 151 -14 2 1516 545 0 15 0 chr3 122103184 122103249 -37496534 + (TC)n Simple_repeat Simple_repeat 1 66 0 2 1516 740 235 47 6 chr3 122103617 122103788 -37495995 - RMER30 DNA MER1_type 0 202 25 2 1516 310 342 60 34 chr3 122104651 122104884 -37494899 - MIRb SINE MIR -26 242 4 2 1516 650 171 6 30 chr3 122105660 122106371 -37493412 + (TG)n Simple_repeat Simple_repeat 1 693 0 2 1516 188 295 33 0 chr3 122107025 122107086 -37492697 + MIRb SINE MIR 123 185 -83 2 1516 477 0 0 0 chr3 122108552 122108605 -37491178 + (TG)n Simple_repeat Simple_repeat 1 53 0 2 1516 369 353 58 24 chr3 122108669 122108875 -37490908 - L2 LINE L2 -519 2900 2688 2 1516 342 0 0 0 chr3 122109016 122109054 -37490729 + (TG)n Simple_repeat Simple_repeat 2 39 0 2 1516 217 322 121 7 chr3 122110456 122110598 -37489185 + MER5A DNA MER1_type 25 171 -7 2 1516 271 301 95 56 chr3 122111252 122111450 -37488333 + MIRb SINE MIR 17 222 -40 2 1516 210 71 0 0 chr3 122112383 122112411 -37487372 + (CACCC)n Simple_repeat Simple_repeat 4 31 0 2 1516 262 320 94 28 chr3 122112664 122112844 -37486939 + MIRc SINE MIR 23 214 -54 2 1516 204 40 0 0 chr3 122113342 122113367 -37486416 + (T)n Simple_repeat Simple_repeat 1 25 0 2 1516 1262 48 0 0 chr3 122113422 122113569 -37486214 + B1_Mus1 SINE Alu 2 148 0 2 1516 294 179 0 0 chr3 122113572 122113628 -37486155 + A-rich Low_complexity Low_complexity 1 56 0 2 1516 968 214 5 46 chr3 122113656 122113872 -37485911 - B3 SINE B2 -5 211 5 2 1516 341 326 100 14 chr3 122114526 122114666 -37485117 - MIRb SINE MIR -108 160 9 2 1516 181 342 13 52 chr3 122114672 122114749 -37485034 + MIR SINE MIR 5 78 -184 2 1516 371 235 82 0 chr3 122114809 122114907 -37484876 + ID_B1 SINE B4 83 188 -36 2 1516 341 305 38 0 chr3 122114835 122114940 -37484843 + B1F1 SINE Alu 36 144 -5 2 1516 246 286 0 0 chr3 122114987 122115050 -37484733 + MIR SINE MIR 163 225 -37 2 1516 395 333 0 0 chr3 122115309 122115414 -37484369 - PB1 SINE Alu -10 117 13 2 1516 237 319 60 112 chr3 122116360 122116375 -37483408 + B4 SINE B4 79 138 -154 2 1516 521 257 9 0 chr3 122116375 122116480 -37483303 + PB1D10 SINE Alu 7 112 -5 2 1516 237 319 60 112 chr3 122116480 122116494 -37483289 + B4 SINE B4 139 205 -87 2 1516 366 179 32 24 chr3 122116494 122116620 -37483163 + G-rich Low_complexity Low_complexity 6 132 0 2 1516 204 40 0 0 chr3 122116865 122116890 -37482893 + (CCTG)n Simple_repeat Simple_repeat 3 27 0 2 1516 270 325 133 32 chr3 122117562 122117810 -37481973 - L2c LINE L2 0 3387 3115 2 1516 767 204 131 26 chr3 122118569 122118760 -37481023 + B3 SINE B2 1 211 -5 2 1516 1663 47 0 0 chr3 122118860 122119053 -37480730 + B2_Mm1t SINE B2 1 193 0 2 1516 228 359 118 15 chr3 122119056 122119319 -37480464 + L1MC LINE L1 5375 5664 -2218 2 1516 422 299 0 0 chr3 122119378 122119475 -37480308 + B3 SINE B2 112 208 -8 2 1516 630 266 165 0 chr3 122119518 122119706 -37480077 + ID_B1 SINE B4 6 224 0 2 1516 604 263 112 10 chr3 122119848 122120044 -37479739 + MER2 DNA MER2_type 127 342 -3 2 1516 236 53 26 0 chr3 122120045 122120083 -37479700 + (TG)n Simple_repeat Simple_repeat 2 40 0 2 1516 190 102 82 0 chr3 122120084 122120133 -37479650 + (CAGAGA)n Simple_repeat Simple_repeat 4 56 0 2 1516 186 244 73 0 chr3 122120422 122120463 -37479320 - L2a LINE L2 -71 3355 3312 2 1516 455 320 80 66 chr3 122120904 122121192 -37478591 - L1M4c LINE L1 -5080 1304 1013 2 1516 850 151 28 192 chr3 122121271 122121484 -37478299 - URR1A DNA MER1_type -32 194 17 2 1516 1106 78 7 0 chr3 122121495 122121637 -37478146 + B1_Mus2 SINE Alu 5 147 0 2 1516 1110 201 97 41 chr3 122121664 122121994 -37477789 + MTD LTR MaLR 35 379 0 2 1516 238 259 25 0 chr3 122122264 122122345 -37477438 - L1M5 LINE L1 -1114 5032 4950 2 1516 211 72 0 45 chr3 122123880 122123924 -37475859 + (TTTTTG)n Simple_repeat Simple_repeat 2 43 0 2 1516 312 291 122 25 chr3 122125184 122125410 -37474373 - MIRb SINE MIR -7 261 15 2 1516 878 194 187 37 chr3 122125979 122126166 -37473617 - B3 SINE B2 -1 215 1 2 1516 295 269 55 18 chr3 122126374 122126484 -37473299 - MER5B DNA MER1_type -6 172 59 2 1516 246 62 0 0 chr3 122129199 122129231 -37470552 + (GA)n Simple_repeat Simple_repeat 1 32 0 2 1516 202 189 0 0 chr3 122129755 122129792 -37469991 + CT-rich Low_complexity Low_complexity 2 38 0 2 1516 228 345 0 0 chr3 122129846 122129904 -37469879 - ID4 SINE ID -24 59 2 2 1516 376 338 60 74 chr3 122129905 122130189 -37469594 - L1MC5 LINE L1 -74 7887 7608 2 1516 342 0 0 0 chr3 122131528 122131566 -37468217 + (CA)n Simple_repeat Simple_repeat 1 38 0 2 1516 1426 286 84 12 chr3 122132446 122132874 -37466909 + Tigger7 DNA MER2_type 11 469 -2022 2 1516 568 264 38 0 chr3 122132868 122133027 -37466756 + Tigger7 DNA MER2_type 2288 2452 -39 2 1516 268 185 130 0 chr3 122133321 122133375 -37466408 + PB1D9 SINE Alu 52 112 -8 2 1516 185 132 26 0 chr3 122133460 122133498 -37466285 + CT-rich Low_complexity Low_complexity 2 40 0 2 1516 203 156 0 0 chr3 122133500 122133532 -37466251 + (CACCAT)n Simple_repeat Simple_repeat 4 35 0 2 1516 192 274 21 116 chr3 122135987 122136082 -37463701 + MIR SINE MIR 30 115 -147 2 1516 195 370 83 56 chr3 122136441 122136693 -37463090 - L2b LINE L2 -1 3374 3116 2 1516 439 314 67 10 chr3 122136693 122136862 -37462921 + Charlie5 DNA MER1_type 2421 2601 -23 2 1516 200 59 29 0 chr3 122136862 122136896 -37462887 + (TGGG)n Simple_repeat Simple_repeat 1 35 0 2 1516 439 314 67 10 chr3 122136896 122136919 -37462864 + Charlie5 DNA MER1_type 2602 2624 0 2 1516 251 311 43 79 chr3 122137074 122137125 -37462658 + MT2B LTR ERVL 89 189 -412 2 1516 275 302 47 0 chr3 122137125 122137150 -37462633 + B4A SINE B4 57 85 -207 2 1516 504 276 0 8 chr3 122137150 122137267 -37462516 + PB1D10 SINE Alu 1 116 -1 2 1516 251 311 43 79 chr3 122137211 122137238 -37462545 + MT2B LTR ERVL 190 246 -355 2 1516 579 175 120 26 chr3 122137843 122137960 -37461823 - B1_Mur3 SINE Alu -21 128 1 2 1516 372 252 178 30 chr3 122138174 122138309 -37461474 - RMER30 DNA MER1_type -34 168 14 2 1516 201 286 0 0 chr3 122138537 122138593 -37461190 + G-rich Low_complexity Low_complexity 5 60 0 2 1516 317 235 57 65 chr3 122138757 122138880 -37460903 - HAL1 LINE L1 -1554 953 832 2 1516 22 0 0 0 chr3 122139573 122139595 -37460188 + GC_rich Low_complexity Low_complexity 1 22 0 2 1516 204 274 51 102 chr3 122139671 122139789 -37459994 - L2b LINE L2 -5 3382 3254 2 1516 234 0 0 0 chr3 122140454 122140480 -37459303 + (TTA)n Simple_repeat Simple_repeat 2 27 0 2 1516 473 354 75 35 chr3 122140985 122141357 -37458426 + L3 LINE CR1 3613 3999 -490 2 1516 21 0 0 0 chr3 122141767 122141788 -37457995 + AT_rich Low_complexity Low_complexity 1 21 0 2 1516 444 257 19 19 chr3 122141860 122141967 -37457816 - PB1D10 SINE Alu -1 116 10 2 1516 459 213 0 0 chr3 122142078 122142219 -37457564 + CT-rich Low_complexity Low_complexity 1 141 0 2 1516 244 307 148 8 chr3 122142551 122142679 -37457104 - L2c LINE L2 -12 3375 3230 2 1516 1189 160 50 0 chr3 122142690 122142890 -37456893 + B3 SINE B2 1 210 -6 2 1516 2833 182 39 34 chr3 122142978 122143598 -37456185 + Lx5 LINE L1 6461 7046 -4 2 1516 544 280 176 51 chr3 122144365 122144677 -37455106 - ORR1E LTR MaLR -8 351 1 2 1516 454 328 89 5 chr3 122144979 122145077 -37454706 - L1M5 LINE L1 -2279 3867 3759 2 1516 1208 81 0 0 chr3 122145077 122145225 -37454558 - B1_Mus1 SINE Alu 0 148 1 2 1516 454 328 89 5 chr3 122145225 122145328 -37454455 - L1M5 LINE L1 -2388 3758 3650 2 1516 396 175 38 0 chr3 122146097 122146177 -37453606 + PB1D9 SINE Alu 37 119 -1 2 1516 243 0 0 0 chr3 122146502 122146529 -37453254 + (TG)n Simple_repeat Simple_repeat 2 28 0 2 1516 453 36 0 0 chr3 122146531 122146586 -37453197 + (CA)n Simple_repeat Simple_repeat 2 56 0 2 1516 652 320 69 11 chr3 122146618 122146893 -37452890 + B4A SINE B4 2 292 0 2 1516 234 278 0 0 chr3 122146899 122147007 -37452776 + (CA)n Simple_repeat Simple_repeat 1 108 0 2 1516 2214 78 40 53 chr3 122147014 122147337 -37452446 - ORR1A2 LTR MaLR -8 319 1 2 1516 229 292 83 19 chr3 122147494 122147651 -37452132 - L1MA6 LINE L1 -256 6044 5878 2 1516 932 293 47 3 chr3 122147837 122148176 -37451607 - L1MB3 LINE L1 -152 6031 5678 2 1516 359 310 38 25 chr3 122148224 122148383 -37451400 - MLT1E3 LTR MaLR -444 180 20 2 1516 217 318 46 23 chr3 122148621 122148708 -37451075 + L2c LINE L2 2989 3077 -310 2 1516 22 35 0 0 chr3 122149250 122149279 -37450504 + AT_rich Low_complexity Low_complexity 1 29 0 2 1516 539 165 10 20 chr3 122149307 122149406 -37450377 + B1_Mur1 SINE Alu 49 146 -3 2 1516 201 121 0 0 chr3 122150895 122150928 -37448855 + (TCC)n Simple_repeat Simple_repeat 3 35 0 3 1516 807 156 0 0 chr3 122151007 122151186 -37448597 + (CCTG)n Simple_repeat Simple_repeat 2 180 0 3 1516 399 265 33 24 chr3 122151213 122151322 -37448461 - B1_Mur2 SINE Alu -14 106 4 3 1516 355 320 18 80 chr3 122152117 122152280 -37447503 - MIR SINE MIR -31 231 79 3 1516 211 342 63 0 chr3 122152521 122152632 -37447151 - L3 LINE CR1 -1091 3398 3281 3 1516 1211 14 43 0 chr3 122152803 122152943 -37446840 - B1_Mm SINE Alu 0 147 2 3 1516 229 337 45 0 chr3 122154152 122154241 -37445542 + MER3 DNA MER1_type 4 96 -113 3 1516 349 250 12 48 chr3 122154324 122154408 -37445375 + ID2 SINE ID 2 82 -1 3 1516 180 0 0 0 chr3 122154418 122154438 -37445345 + (GGGAGA)n Simple_repeat Simple_repeat 2 21 0 3 1516 972 186 108 0 chr3 122154469 122154663 -37445120 + B3 SINE B2 1 215 -1 3 1516 505 245 96 29 chr3 122155012 122155199 -37444584 - B3A SINE B2 -13 203 15 3 1516 594 263 64 106 chr3 122155477 122155741 -37444042 + Charlie1a DNA MER1_type 489 741 -714 3 1516 204 216 0 0 chr3 122155744 122155781 -37444002 + (TG)n Simple_repeat Simple_repeat 1 37 0 3 1516 697 250 6 35 chr3 122155783 122155953 -37443830 - RSINE1 SINE B4 0 165 1 3 1516 217 118 19 19 chr3 122155962 122156014 -37443769 + CT-rich Low_complexity Low_complexity 1 52 0 3 1516 232 168 79 114 chr3 122156055 122156169 -37443614 + Charlie1a DNA MER1_type 1294 1403 -52 3 1516 189 0 0 0 chr3 122156228 122156249 -37443534 + (TG)n Simple_repeat Simple_repeat 1 21 0 3 1516 382 307 98 72 chr3 122158199 122158504 -37441279 - MER46C DNA MER2_type -25 313 1 3 1517 793 310 101 95 chr3 122159529 122160046 -37439737 + MER44B DNA MER2_type 30 549 -1 3 1517 600 50 0 0 chr3 122160383 122160463 -37439320 + (TG)n Simple_repeat Simple_repeat 2 81 0 3 1517 545 161 203 0 chr3 122160465 122160583 -37439200 - B3 SINE B2 -70 146 5 3 1517 258 32 0 0 chr3 122161954 122161985 -37437798 + (A)n Simple_repeat Simple_repeat 1 31 0 3 1517 490 234 67 45 chr3 122162453 122162587 -37437196 - B1F1 SINE Alu -1 148 12 3 1517 464 292 34 27 chr3 122162454 122162602 -37437181 - ID_B1 SINE B4 0 224 76 3 1517 591 219 24 24 chr3 122162832 122162958 -37436825 - RSINE1 SINE B4 -29 136 11 3 1517 869 0 10 0 chr3 122163071 122163172 -37436611 + (TCTCC)n Simple_repeat Simple_repeat 5 106 0 3 1517 222 118 0 0 chr3 122163172 122163206 -37436577 + (TTCC)n Simple_repeat Simple_repeat 2 35 0 3 1517 1139 258 77 65 chr3 122163271 122163764 -37436019 - Lx9 LINE L1 -21 7623 7125 3 1517 355 246 80 141 chr3 122164890 122165089 -37434694 + L1MD1 LINE L1 5662 5848 -511 3 1517 261 263 91 25 chr3 122165186 122165307 -37434476 + L1ME1 LINE L1 6024 6152 -27 3 1517 352 278 161 85 chr3 122165831 122166055 -37433728 + Cheshire DNA MER1_type 1 241 -2179 3 1517 1366 112 48 57 chr3 122166634 122166862 -37432921 - URR1A DNA MER1_type 0 226 1 3 1517 336 322 32 32 chr3 122167196 122167321 -37432462 + MLT1C LTR MaLR 6 130 -337 3 1517 885 224 102 0 chr3 122167440 122167645 -37432138 + B4A SINE B4 6 231 -61 3 1517 486 282 72 20 chr3 122167645 122167797 -37431986 + U1 snRNA snRNA 2 161 -4 3 1517 716 254 11 40 chr3 122167886 122168091 -37431692 - ID_B1 SINE B4 0 224 30 3 1517 181 333 0 65 chr3 122168180 122168257 -37431526 + MIRb SINE MIR 188 259 -9 3 1517 24 0 0 0 chr3 122168442 122168466 -37431317 + AT_rich Low_complexity Low_complexity 1 24 0 3 1517 328 174 126 13 chr3 122168510 122168591 -37431192 - PB1D10 SINE Alu -17 103 14 3 1517 180 0 0 0 chr3 122168619 122168639 -37431144 + (T)n Simple_repeat Simple_repeat 1 20 0 3 1517 1024 78 50 0 chr3 122168639 122168780 -37431003 - B1_Mus1 SINE Alu 0 148 1 3 1517 801 245 0 0 chr3 122170965 122171116 -37428667 + B3A SINE B2 1 151 -47 3 1517 806 145 26 70 chr3 122171301 122171457 -37428326 - B1_Mus1 SINE Alu -1 149 1 3 1517 288 0 0 0 chr3 122171614 122171646 -37428137 + (T)n Simple_repeat Simple_repeat 1 32 0 3 1517 1279 34 0 0 chr3 122171646 122171793 -37427990 - B1_Mus2 SINE Alu 0 147 1 3 1517 218 310 44 9 chr3 122171879 122171993 -37427790 + (TG)n Simple_repeat Simple_repeat 1 118 0 3 1517 633 115 0 0 chr3 122172020 122172116 -37427667 + (TG)n Simple_repeat Simple_repeat 2 97 0 3 1517 492 294 141 44 chr3 122172116 122172315 -37427468 - B4A SINE B4 -6 286 67 3 1517 1884 286 104 34 chr3 122172406 122173222 -37426561 - Charlie1a DNA MER1_type -150 1305 433 3 1517 476 316 25 25 chr3 122173305 122173503 -37426280 - Charlie1a DNA MER1_type -1199 256 59 3 1517 1034 286 69 7 chr3 122174606 122174895 -37424888 - MTE2a LTR MaLR 0 379 73 3 1517 870 246 18 28 chr3 122174895 122175112 -37424671 + B3 SINE B2 2 216 0 3 1517 1405 50 10 52 chr3 122175896 122176088 -37423695 + B2_Mm1a SINE B2 1 184 -9 3 1517 269 346 152 45 chr3 122176796 122177020 -37422763 - MLT1K LTR MaLR -174 421 174 3 1517 480 248 111 21 chr3 122178941 122179085 -37420698 + RSINE1 SINE B4 4 160 -5 3 1517 238 269 12 49 chr3 122180450 122180532 -37419251 - MIR SINE MIR -77 131 53 3 1517 246 276 22 54 chr3 122180916 122181008 -37418775 + Charlie4z DNA MER1_type 30 118 -49 3 1517 273 57 0 0 chr3 122181082 122181117 -37418666 + (TCC)n Simple_repeat Simple_repeat 3 37 0 3 1517 459 263 145 7 chr3 122181154 122181292 -37418491 - ID_B1 SINE B4 -65 159 3 3 1517 767 298 56 15 chr3 122182035 122182301 -37417482 - Tigger5 DNA MER2_type 0 2406 2130 3 1517 483 190 0 0 chr3 122182643 122182785 -37416998 + (TG)n Simple_repeat Simple_repeat 2 143 0 3 1517 792 151 0 0 chr3 122182808 122183015 -37416768 + (TG)n Simple_repeat Simple_repeat 1 207 0 3 1517 246 62 0 0 chr3 122185899 122185931 -37413852 + (TGG)n Simple_repeat Simple_repeat 1 32 0 3 1517 245 340 144 5 chr3 122190206 122190401 -37409382 - L2b LINE L2 -186 3189 2968 3 1517 1229 41 0 0 chr3 122190457 122190602 -37409181 + B1_Mus1 SINE Alu 1 145 -3 3 1517 180 111 0 0 chr3 122190607 122190634 -37409149 + (A)n Simple_repeat Simple_repeat 1 27 0 3 1517 231 61 0 0 chr3 122190711 122190744 -37409039 + (TCTG)n Simple_repeat Simple_repeat 2 34 0 3 1517 408 88 0 0 chr3 122191738 122191795 -37407988 + (TG)n Simple_repeat Simple_repeat 1 57 0 3 1517 276 345 17 26 chr3 122197023 122197139 -37402644 - MER91B DNA Tip100 0 190 76 3 1517 453 212 190 25 chr3 122197494 122197615 -37402168 - RSINE1 SINE B4 -9 156 16 3 1517 195 222 0 0 chr3 122198644 122198689 -37401094 + C-rich Low_complexity Low_complexity 3 47 0 3 1517 183 156 0 0 chr3 122198795 122198827 -37400956 + T-rich Low_complexity Low_complexity 2 33 0 3 1517 624 203 84 8 chr3 122199181 122199300 -37400483 + RSINE1 SINE B4 2 129 -36 3 1517 23 33 0 0 chr3 122199309 122199339 -37400444 + AT_rich Low_complexity Low_complexity 1 30 0 3 1517 378 0 0 0 chr3 122199651 122199693 -37400090 + (GGAA)n Simple_repeat Simple_repeat 1 42 0 3 1517 180 290 29 14 chr3 122199751 122199821 -37399962 - L2b LINE L2 -15 3360 3290 3 1517 273 289 67 40 chr3 122201645 122201791 -37397992 - MIR SINE MIR -81 187 31 3 1517 270 0 0 0 chr3 122201803 122201833 -37397950 + (TG)n Simple_repeat Simple_repeat 1 30 0 3 1517 441 275 99 29 chr3 122202674 122202846 -37396937 - MIR SINE MIR 0 262 79 3 1517 509 303 35 0 chr3 122202939 122203081 -37396702 + ID_B1 SINE B4 78 224 0 3 1517 889 197 23 142 chr3 122203552 122203691 -37396092 + Lx8 LINE L1 7016 7153 -320 3 1517 488 219 128 16 chr3 122203691 122203816 -37395967 + B1_Mur3 SINE Alu 2 140 -9 3 1517 889 197 23 142 chr3 122203816 122203936 -37395847 + Lx8 LINE L1 7154 7244 -229 3 1517 746 215 7 27 chr3 122204122 122204270 -37395513 + ID_B1 SINE B4 71 215 -9 3 1517 1223 56 0 0 chr3 122205024 122205166 -37394617 + B1_Mus1 SINE Alu 1 142 -6 3 1517 276 260 91 68 chr3 122205195 122205327 -37394456 - MLT1J LTR MaLR -121 391 257 3 1517 208 309 33 56 chr3 122205505 122205627 -37394156 - L2a LINE L2 -50 3376 3226 3 1517 652 203 29 29 chr3 122205791 122205928 -37393855 + B1F SINE Alu 2 138 -11 3 1517 243 234 195 18 chr3 122206407 122206520 -37393263 - Charlie10 DNA MER1_type 0 2822 2690 3 1517 490 250 0 53 chr3 122206573 122206687 -37393096 + PB1D10 SINE Alu 9 116 -1 3 1517 633 249 92 66 chr3 122206702 122206973 -37392810 + B4A SINE B4 3 280 -12 3 1517 933 240 34 0 chr3 122207040 122207248 -37392535 + B3 SINE B2 2 216 0 3 1517 1000 81 81 0 chr3 122208711 122208847 -37390936 + B1_Mus1 SINE Alu 2 148 0 3 1517 30 21 0 21 chr3 122208849 122208880 -37390903 + AT_rich Low_complexity Low_complexity 1 31 0 3 1517 607 246 119 7 chr3 122208880 122209023 -37390760 - RSINE1 SINE B4 -4 161 3 3 1517 30 21 0 21 chr3 122209023 122209039 -37390744 + AT_rich Low_complexity Low_complexity 1 16 0 3 1517 415 270 131 24 chr3 122209669 122209837 -37389946 - MIR SINE MIR -69 207 33 3 1517 251 349 137 21 chr3 122210178 122210367 -37389416 + L2a LINE L2 3096 3307 -119 3 1517 348 83 0 0 chr3 122210367 122210415 -37389368 + (CA)n Simple_repeat Simple_repeat 2 49 0 3 1517 251 349 137 21 chr3 122210415 122210509 -37389274 + L2a LINE L2 3308 3412 -14 3 1517 358 299 0 100 chr3 122210513 122210643 -37389140 - B1F1 SINE Alu 0 117 1 3 1517 437 221 83 160 chr3 122210711 122210867 -37388916 + B4 SINE B4 9 152 -140 3 1517 253 354 16 74 chr3 122211624 122211746 -37388037 + PB1D10 SINE Alu 1 115 -2 3 1517 224 258 69 40 chr3 122212644 122212745 -37387038 + MIRb SINE MIR 42 145 -123 3 1517 225 0 0 0 chr3 122213772 122213797 -37385986 + (T)n Simple_repeat Simple_repeat 1 25 0 3 1517 334 288 17 35 chr3 122214363 122214478 -37385305 - MIRb SINE MIR -30 238 126 3 1517 287 128 21 0 chr3 122216418 122216465 -37383318 + B3A SINE B2 1 48 -150 4 1517 1296 105 39 0 chr3 122216577 122216758 -37383025 + B2_Mm2 SINE B2 1 188 -7 4 1517 478 329 38 12 chr3 122216810 122216961 -37382822 + RSINE1 SINE B4 2 157 -8 4 1517 1389 61 0 0 chr3 122216961 122217141 -37382642 + (CA)n Simple_repeat Simple_repeat 1 180 0 4 1517 1202 180 15 0 chr3 122217175 122217381 -37382402 + B3 SINE B2 3 211 -5 4 1517 198 0 0 0 chr3 122217571 122217593 -37382190 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 4 1517 1098 97 52 0 chr3 122217593 122217747 -37382036 - B2_Mm2 SINE B2 -33 162 1 4 1517 273 294 133 29 chr3 122219253 122219424 -37380359 + MIRb SINE MIR 49 262 0 4 1517 225 0 0 0 chr3 122221362 122221387 -37378396 + (CA)n Simple_repeat Simple_repeat 2 26 0 4 1517 327 49 0 0 chr3 122221476 122221517 -37378266 + (CA)n Simple_repeat Simple_repeat 2 42 0 4 1517 261 0 0 0 chr3 122221672 122221701 -37378082 + (TG)n Simple_repeat Simple_repeat 2 30 0 4 1517 251 288 34 51 chr3 122221765 122221882 -37377901 - B1_Mur3 SINE Alu -34 115 1 4 1517 669 272 65 11 chr3 122221882 122221967 -37377816 - B4 SINE B4 -197 95 1 4 1517 544 257 148 7 chr3 122222695 122222928 -37376855 - MTE2a LTR MaLR -3 376 96 4 1517 293 148 33 0 chr3 122223206 122223267 -37376516 + CT-rich Low_complexity Low_complexity 3 65 0 4 1517 313 322 8 17 chr3 122223504 122223523 -37376260 + ID SINE ID 65 82 -142 4 1517 344 307 0 10 chr3 122223523 122223625 -37376158 + PB1D10 SINE Alu 3 103 -14 4 1517 284 283 94 34 chr3 122224740 122224857 -37374926 + PB1 SINE Alu 2 125 -2 4 1517 263 288 0 0 chr3 122224866 122224939 -37374844 + ID4_ SINE ID 2 74 -9 4 1517 354 45 0 0 chr3 122225076 122225120 -37374663 + (CA)n Simple_repeat Simple_repeat 2 45 0 4 1517 201 180 47 47 chr3 122225707 122225771 -37374012 + CT-rich Low_complexity Low_complexity 3 66 0 4 1517 943 187 111 24 chr3 122226678 122226886 -37372897 + URR1A DNA MER1_type 1 226 0 4 1517 714 279 55 15 chr3 122228598 122228798 -37370985 - B4 SINE B4 -1 291 84 4 1517 793 178 66 7 chr3 122228817 122228953 -37370830 + B1_Mur4 SINE Alu 1 144 -6 4 1517 327 299 20 81 chr3 122228991 122229140 -37370643 - B3A SINE B2 -16 182 43 4 1517 2077 292 78 26 chr3 122229282 122230151 -37369632 - Lx9 LINE L1 -149 7495 6582 4 1517 494 264 6 61 chr3 122230186 122230351 -37369432 - Lx9 LINE L1 -1171 6473 6318 4 1517 180 97 0 0 chr3 122230446 122230477 -37369306 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 4 1517 2131 196 68 24 chr3 122230596 122231186 -37368597 - Lx9 LINE L1 -398 5899 5255 4 1517 361 319 54 15 chr3 122231186 122231325 -37368458 - B4 SINE B4 -147 145 3 4 1517 225 0 0 0 chr3 122231622 122231647 -37368136 + (GTGTG)n Simple_repeat Simple_repeat 1 25 0 4 1517 872 241 49 5 chr3 122231828 122232032 -37367751 - ID_B1 SINE B4 -11 213 1 4 1517 287 262 66 7 chr3 122233467 122233563 -37366220 - ORR1E LTR MaLR -38 341 241 4 1517 265 279 139 0 chr3 122233566 122233652 -37366131 - B4A SINE B4 -191 101 4 4 1517 734 257 0 0 chr3 122233666 122233810 -37365973 - ID_B1 SINE B4 0 224 81 4 1517 919 273 139 57 chr3 122234162 122234624 -37365159 - MLT2B3 LTR ERVL -12 503 1 4 1517 7349 91 14 2 chr3 122234965 122236510 -37363273 + L1_Mus3 LINE L1 5072 6634 -4 4 1517 1108 141 37 11 chr3 122236602 122236789 -37362994 + B2_Mm2 SINE B2 4 195 0 4 1517 790 285 18 50 chr3 122236806 122236850 -37362933 - B3 SINE B2 -4 212 170 4 1517 192 77 0 0 chr3 122236850 122236876 -37362907 + (TG)n Simple_repeat Simple_repeat 1 26 0 4 1517 790 285 18 50 chr3 122236876 122237049 -37362734 - B3 SINE B2 -47 169 2 4 1517 925 124 25 106 chr3 122237172 122237371 -37362412 + B2_Mm2 SINE B2 3 185 -10 4 1517 423 330 184 16 chr3 122237406 122237738 -37362045 + MLT1F1 LTR MaLR 1 400 -169 4 1517 1293 201 138 18 chr3 122238137 122238471 -37361312 - ORR1D1 LTR MaLR 0 374 1 4 1517 1393 169 91 25 chr3 122240389 122240816 -37358967 + MT2A LTR ERVL 3 506 -27 4 1517 216 269 45 0 chr3 122245357 122245424 -37354359 - MIRc SINE MIR -31 237 168 4 1517 431 335 42 42 chr3 122245579 122245747 -37354036 + B4A SINE B4 123 290 -2 4 1517 216 0 0 0 chr3 122245808 122245832 -37353951 + (TG)n Simple_repeat Simple_repeat 1 24 0 4 1517 435 38 0 0 chr3 122245832 122245884 -37353899 + (GA)n Simple_repeat Simple_repeat 1 53 0 4 1517 424 286 57 0 chr3 122245885 122246025 -37353758 - RSINE1 SINE B4 -15 150 3 4 1517 2701 223 43 18 chr3 122246810 122247431 -37352352 + Lx5 LINE L1 6409 7045 -5 4 1517 180 0 0 0 chr3 122247431 122247451 -37352332 + (CAT)n Simple_repeat Simple_repeat 1 20 0 4 1517 206 226 0 0 chr3 122248965 122249018 -37350765 + T-rich Low_complexity Low_complexity 2 54 0 4 1517 825 137 71 7 chr3 122249487 122249627 -37350156 - B1_Mur4 SINE Alu 0 150 2 4 1517 364 190 25 33 chr3 122250362 122250458 -37349325 - PB1D10 SINE Alu 0 127 22 4 1517 185 269 0 19 chr3 122251262 122251315 -37348468 + MIRb SINE MIR 165 216 -52 4 1517 248 0 31 0 chr3 122251441 122251473 -37348310 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 4 1517 1276 142 54 5 chr3 122251651 122251856 -37347927 + B3 SINE B2 2 216 0 4 1517 277 237 25 38 chr3 122251899 122251914 -37347869 - ID2 SINE ID -4 79 2 4 1517 311 172 31 0 chr3 122251914 122251978 -37347805 - B4 SINE B4 -225 67 2 4 1517 210 330 69 69 chr3 122252807 122252926 -37346857 - B4 SINE B4 -16 276 88 4 1517 245 235 14 29 chr3 122252926 122252996 -37346787 - B1F1 SINE Alu -78 71 3 4 1517 265 255 120 20 chr3 122253105 122253211 -37346572 - B1F1 SINE Alu -3 114 6 4 1517 855 223 55 35 chr3 122253530 122253730 -37346053 - B3 SINE B2 -7 209 6 4 1517 28 0 0 0 chr3 122254771 122254799 -37344984 + AT_rich Low_complexity Low_complexity 1 28 0 4 1517 273 163 0 0 chr3 122255258 122255307 -37344476 + A-rich Low_complexity Low_complexity 1 49 0 4 1517 21 0 0 0 chr3 122255640 122255661 -37344122 + AT_rich Low_complexity Low_complexity 1 21 0 4 1517 254 269 12 25 chr3 122256061 122256141 -37343642 + ID2 SINE ID 5 83 0 4 1517 23 33 0 0 chr3 122256214 122256244 -37343539 + AT_rich Low_complexity Low_complexity 1 30 0 4 1517 278 350 0 12 chr3 122258302 122258383 -37341400 + ID4_ SINE ID 3 82 -1 4 1517 452 303 48 21 chr3 122258716 122258861 -37340922 - B1F1 SINE Alu 0 149 1 4 1517 30 0 0 0 chr3 122261080 122261110 -37338673 + AT_rich Low_complexity Low_complexity 1 30 0 4 1517 1816 150 64 30 chr3 122262866 122263251 -37336532 + ORR1B1 LTR MaLR 17 394 0 4 1517 588 202 8 26 chr3 122263611 122263728 -37336055 + PB1D9 SINE Alu 1 115 -5 4 1517 2093 135 9 6 chr3 122264319 122264640 -37335143 + ORR1A3 LTR MaLR 1 322 -4 4 1517 223 309 29 14 chr3 122264884 122264953 -37334830 - ID4_ SINE ID -11 72 3 4 1517 612 101 0 0 chr3 122264953 122265042 -37334741 + (TCTA)n Simple_repeat Simple_repeat 3 91 0 4 1517 399 268 80 16 chr3 122267316 122267441 -37332342 - B1F SINE Alu -13 136 4 4 1517 637 280 86 5 chr3 122267487 122267674 -37332109 + B3 SINE B2 12 213 -3 4 1517 273 304 63 28 chr3 122268115 122268257 -37331526 - HAL1 LINE L1 -906 1601 1455 4 1517 823 338 136 35 chr3 122268639 122269243 -37330540 - HAL1 LINE L1 -1307 1200 536 4 1517 357 238 54 54 chr3 122269510 122269621 -37330162 + MLT1L LTR MaLR 220 330 -280 4 1517 225 0 0 0 chr3 122270775 122270800 -37328983 + (CA)n Simple_repeat Simple_repeat 2 26 0 4 1517 21 0 0 0 chr3 122271898 122271919 -37327864 + AT_rich Low_complexity Low_complexity 1 21 0 4 1517 530 302 40 34 chr3 122272116 122272291 -37327492 - MER58B DNA MER1_type -165 176 1 4 1517 344 333 117 47 chr3 122274507 122274721 -37325062 + MIRb SINE MIR 27 255 -13 4 1517 352 326 81 74 chr3 122274837 122274986 -37324797 - B4A SINE B4 -140 152 3 4 1517 601 267 125 103 chr3 122275530 122275898 -37323885 - MTE2a LTR MaLR -2 377 2 4 1517 342 0 0 0 chr3 122276281 122276319 -37323464 + (CAAAA)n Simple_repeat Simple_repeat 2 39 0 4 1517 362 263 76 0 chr3 122276585 122276703 -37323080 + L1MB7 LINE L1 5939 6065 -119 4 1517 746 262 51 60 chr3 122276705 122276940 -37322843 + B4A SINE B4 2 234 -58 4 1517 367 133 0 24 chr3 122276937 122277016 -37322767 + B1F1 SINE Alu 33 133 -16 4 1517 432 0 0 0 chr3 122277016 122277064 -37322719 + (CA)n Simple_repeat Simple_repeat 1 48 0 4 1517 270 284 204 22 chr3 122277544 122277681 -37322102 + MLT1J2 LTR MaLR 254 415 -33 4 1517 832 208 27 45 chr3 122278096 122278371 -37321412 - ORR1D1 LTR MaLR 0 374 41 4 1517 7391 246 93 35 chr3 122278539 122281784 -37317999 + Lx7 LINE L1 3497 6927 -769 4 1517 225 272 53 0 chr3 122281787 122281901 -37317882 + (CATATA)n Simple_repeat Simple_repeat 3 122 0 4 1517 685 321 109 17 chr3 122281911 122282332 -37317451 + Lx7 LINE L1 6972 7431 -42 4 1517 565 290 68 5 chr3 122282374 122282596 -37317187 + L1MB3 LINE L1 5593 5828 -343 4 1517 1368 102 32 0 chr3 122283125 122283311 -37316472 - B2_Mm1a SINE B2 0 193 2 4 1517 884 250 95 16 chr3 122283445 122283762 -37316021 + L1MB3 LINE L1 5835 6176 -7 4 1517 1221 62 7 0 chr3 122284053 122284199 -37315584 - B1_Mus1 SINE Alu 0 148 2 4 1517 531 45 0 0 chr3 122285425 122285491 -37314292 + (GA)n Simple_repeat Simple_repeat 1 66 0 4 1517 216 97 0 0 chr3 122285613 122285644 -37314139 + (T)n Simple_repeat Simple_repeat 1 31 0 4 1517 5929 63 88 9 chr3 122285660 122287051 -37312732 + L1Md_F2 LINE L1 5103 6582 0 4 1517 495 214 19 19 chr3 122287073 122287178 -37312605 - PB1D9 SINE Alu -9 111 7 4 1517 229 253 0 142 chr3 122287098 122287204 -37312579 - MT2B LTR ERVL -360 241 151 5 1517 856 157 0 50 chr3 122287517 122287658 -37312125 + B1_Mur4 SINE Alu 1 134 -16 5 1517 220 238 0 23 chr3 122287956 122287999 -37311784 + B4 SINE B4 77 118 -174 5 1517 2345 161 9 52 chr3 122288819 122289244 -37310539 - MTB_Mm LTR MaLR 0 407 1 5 1517 309 317 107 27 chr3 122289403 122289419 -37310364 + B4 SINE B4 69 214 -78 5 1517 487 249 10 11 chr3 122289419 122289533 -37310250 + B1_Mur2 SINE Alu 3 108 -12 5 1517 234 62 0 0 chr3 122289533 122289565 -37310218 + (TAAA)n Simple_repeat Simple_repeat 2 33 0 5 1517 415 261 8 94 chr3 122289565 122289577 -37310206 + PB1D9 SINE Alu 109 118 -2 5 1517 241 305 61 40 chr3 122289696 122289795 -37309988 + PB1D10 SINE Alu 1 101 -16 5 1518 1180 192 34 0 chr3 122291286 122291494 -37308289 + B3 SINE B2 2 216 0 5 1518 309 266 31 21 chr3 122291988 122292084 -37307699 + B4 SINE B4 73 169 -123 5 1518 624 177 9 9 chr3 122292007 122292121 -37307662 + PB1D9 SINE Alu 7 120 0 5 1518 309 234 158 11 chr3 122293331 122293426 -37306357 + MLT2D LTR ERVL 402 510 -50 5 1518 266 318 0 0 chr3 122294056 122294144 -37305639 + MLT2D LTR ERVL 466 553 -2 5 1518 643 216 0 0 chr3 122294175 122294291 -37305492 + B3 SINE B2 15 130 -86 5 1518 251 256 81 11 chr3 122294345 122294432 -37305351 + MER57A-int LTR ERV1 5800 5892 -295 5 1518 785 282 112 62 chr3 122294778 122295484 -37304299 - Charlie7 DNA MER1_type -761 1851 1050 5 1518 264 224 0 0 chr3 122295528 122295577 -37304206 + PB1 SINE Alu 32 80 -47 5 1518 693 306 112 77 chr3 122295685 122296114 -37303669 + MER21B LTR ERV1 13 456 -407 5 1518 373 250 61 26 chr3 122296590 122296705 -37303078 + B1F SINE Alu 31 149 0 5 1518 27 29 0 0 chr3 122296881 122296915 -37302868 + AT_rich Low_complexity Low_complexity 1 34 0 5 1518 532 225 245 7 chr3 122297049 122297188 -37302595 - B3A SINE B2 -25 173 2 5 1518 264 346 75 0 chr3 122297237 122297344 -37302439 - B1F SINE Alu -1 148 34 5 1518 304 228 18 0 chr3 122297344 122297401 -37302382 - ID SINE ID -164 60 3 5 1518 578 269 0 28 chr3 122297514 122297659 -37302124 + RSINE1 SINE B4 25 165 0 5 1518 1226 96 0 0 chr3 122298612 122298779 -37301004 + B2_Mm2 SINE B2 2 168 -27 5 1518 183 42 0 0 chr3 122298779 122298803 -37300980 + (CAAAT)n Simple_repeat Simple_repeat 1 24 0 5 1518 404 360 103 46 chr3 122298847 122299581 -37300202 + L2 LINE L2 757 1532 -1887 5 1518 758 252 324 0 chr3 122300671 122300878 -37298905 - B4 SINE B4 -3 289 16 5 1518 312 256 25 37 chr3 122300811 122300892 -37298891 - ID2 SINE ID -3 80 1 5 1518 211 259 33 33 chr3 122300974 122301034 -37298749 - L2 LINE L2 -871 2548 2489 5 1518 497 200 111 17 chr3 122301702 122301812 -37297971 + PB1D10 SINE Alu 1 110 -38 5 1518 318 240 505 34 chr3 122301812 122302016 -37297767 + B4A SINE B4 1 291 -1 5 1518 1037 264 204 30 chr3 122302052 122302454 -37297329 - Tigger7 DNA MER2_type -2019 472 1 5 1518 1147 245 144 0 chr3 122303375 122303701 -37296082 - MTEa LTR MaLR -6 373 1 5 1518 486 204 254 35 chr3 122304465 122304638 -37295145 - B3 SINE B2 -4 212 2 5 1518 566 216 54 0 chr3 122305039 122305150 -37294633 + PB1D9 SINE Alu 2 118 -2 5 1518 244 337 134 70 chr3 122305268 122305469 -37294314 + ORR1E LTR MaLR 45 258 -101 5 1518 560 302 36 5 chr3 122305621 122305817 -37293966 + B4A SINE B4 13 214 -78 5 1518 267 286 169 16 chr3 122305883 122306132 -37293651 + L2 LINE L2 1652 1938 -1481 5 1518 948 282 139 3 chr3 122306163 122306487 -37293296 + ORR1D2 LTR MaLR 3 370 0 5 1518 618 287 158 26 chr3 122306529 122306908 -37292875 - L1MC4 LINE L1 -258 7784 7356 5 1518 750 289 83 69 chr3 122306945 122307383 -37292400 - L1MC4 LINE L1 -1109 6933 6461 5 1518 321 268 40 30 chr3 122308032 122308132 -37291651 + PB1D10 SINE Alu 7 107 -10 5 1518 465 235 0 0 chr3 122308157 122308238 -37291545 + ID4_ SINE ID 1 81 -2 5 1518 369 0 0 0 chr3 122309262 122309303 -37290480 + (TC)n Simple_repeat Simple_repeat 1 41 0 5 1518 300 27 0 0 chr3 122309303 122309339 -37290444 + (CA)n Simple_repeat Simple_repeat 1 37 0 5 1518 853 184 7 7 chr3 122309626 122309774 -37290009 + B1_Mur4 SINE Alu 2 149 -1 5 1518 257 253 93 0 chr3 122309992 122310067 -37289716 + LTR33 LTR ERVL 434 515 0 5 1518 890 214 119 10 chr3 122310118 122310312 -37289471 + B3 SINE B2 2 216 0 5 1518 202 128 0 60 chr3 122310628 122310645 -37289138 + A-rich Low_complexity Low_complexity 2 18 0 5 1518 1106 95 0 20 chr3 122310645 122310795 -37288988 + B1_Mus1 SINE Alu 1 147 -1 5 1518 202 128 0 60 chr3 122310795 122310827 -37288956 + A-rich Low_complexity Low_complexity 19 48 0 5 1518 892 237 71 0 chr3 122310957 122311126 -37288657 + B3 SINE B2 6 186 -30 5 1518 696 240 98 22 chr3 122311156 122311339 -37288444 + B3A SINE B2 2 198 0 5 1518 464 235 10 0 chr3 122311383 122311481 -37288302 + RSINE1 SINE B4 4 102 -63 5 1518 1146 268 101 44 chr3 122311507 122312011 -37287772 + L1MB8 LINE L1 5494 6026 -152 5 1518 252 200 36 0 chr3 122312099 122312154 -37287629 + GA-rich Low_complexity Low_complexity 1 57 0 5 1518 954 195 78 10 chr3 122312252 122312444 -37287339 + B3 SINE B2 10 214 -2 5 1518 492 260 46 13 chr3 122312550 122312702 -37287081 - MLT1A1 LTR MaLR -214 194 38 5 1518 985 230 150 11 chr3 122312711 122313072 -37286711 - L1M3 LINE L1 -558 5733 5323 5 1518 371 233 131 0 chr3 122313113 122313211 -37286572 - RSINE1 SINE B4 0 165 76 5 1518 679 194 43 6 chr3 122313495 122313656 -37286127 - L1M3 LINE L1 -1011 5129 4963 5 1518 225 0 0 0 chr3 122313662 122313687 -37286096 + (T)n Simple_repeat Simple_repeat 1 25 0 5 1518 1274 172 13 18 chr3 122313761 122313986 -37285797 + URR1B DNA MER1_type 2 225 0 5 1518 642 311 32 28 chr3 122314042 122314260 -37285523 + ID_B1 SINE B4 6 224 0 5 1518 1475 51 79 0 chr3 122314262 122314422 -37285361 + B2_Mm1a SINE B2 1 160 -33 5 1518 360 64 0 0 chr3 122314422 122314469 -37285314 + (TAAA)n Simple_repeat Simple_repeat 3 49 0 5 1518 1475 51 79 0 chr3 122314469 122314486 -37285297 + B2_Mm1a SINE B2 161 190 -3 5 1518 191 36 0 35 chr3 122314486 122314515 -37285268 + (GAAA)n Simple_repeat Simple_repeat 1 28 0 5 1518 745 336 47 47 chr3 122314716 122315078 -37284705 + ORR1D2 LTR MaLR 4 365 -5 5 1518 261 83 0 0 chr3 122315142 122315178 -37284605 + (A)n Simple_repeat Simple_repeat 1 36 0 5 1518 942 274 52 61 chr3 122315773 122316119 -37283664 - MER2 DNA MER2_type -1 344 2 5 1518 239 258 129 57 chr3 122316379 122316449 -37283334 - ID4_ SINE ID -8 75 1 5 1518 637 216 195 49 chr3 122317374 122317559 -37282224 + B3 SINE B2 5 216 0 5 1518 21 36 0 0 chr3 122317559 122317587 -37282196 + AT_rich Low_complexity Low_complexity 1 28 0 5 1518 1648 48 0 5 chr3 122317666 122317855 -37281928 - B2_Mm2 SINE B2 -7 188 1 5 1518 210 189 0 0 chr3 122318161 122318198 -37281585 - L2c LINE L2 -59 3328 3292 5 1518 1013 203 78 5 chr3 122318377 122318570 -37281213 + B3 SINE B2 6 212 -4 5 1518 289 332 101 35 chr3 122318769 122318979 -37280804 - B4A SINE B4 -58 234 7 5 1518 231 167 0 0 chr3 122319045 122319087 -37280696 + (CATATA)n Simple_repeat Simple_repeat 4 45 0 5 1518 938 210 59 15 chr3 122319244 122319447 -37280336 + B3 SINE B2 1 212 -4 5 1518 229 276 52 0 chr3 122319847 122319905 -37279878 + PB1D7 SINE Alu 59 119 -1 5 1518 338 302 50 16 chr3 122320053 122320174 -37279609 + B4 SINE B4 168 292 0 5 1518 745 265 23 23 chr3 122320457 122320631 -37279152 + B3A SINE B2 3 176 -22 5 1518 700 269 22 33 chr3 122320639 122320820 -37278963 + B3A SINE B2 19 197 -1 5 1518 289 161 191 16 chr3 122320820 122320883 -37278900 + ID4_ SINE ID 1 74 -9 5 1518 616 127 84 8 chr3 122320983 122321102 -37278681 + B1_Mur1 SINE Alu 22 149 0 5 1518 302 276 87 107 chr3 122320987 122321137 -37278646 + B4 SINE B4 111 257 -35 5 1518 213 254 158 66 chr3 122321181 122321333 -37278450 + L3 LINE CR1 4301 4466 -23 5 1518 188 111 28 0 chr3 122321721 122321757 -37278026 + (GA)n Simple_repeat Simple_repeat 2 38 0 5 1518 180 77 0 0 chr3 122321752 122321778 -37278005 + (CA)n Simple_repeat Simple_repeat 2 27 0 5 1518 524 15 15 0 chr3 122321778 122321843 -37277940 + (GA)n Simple_repeat Simple_repeat 1 66 0 5 1518 258 32 0 0 chr3 122322646 122322677 -37277106 + (GGGA)n Simple_repeat Simple_repeat 1 31 0 5 1518 27 49 0 0 chr3 122322738 122322779 -37277004 + GC_rich Low_complexity Low_complexity 1 41 0 5 1518 216 0 0 0 chr3 122323943 122323967 -37275816 + (T)n Simple_repeat Simple_repeat 1 24 0 5 1518 360 280 32 0 chr3 122323989 122324082 -37275701 + B1_Mur3 SINE Alu 1 96 -53 5 1518 568 111 70 10 chr3 122324378 122324478 -37275305 + B1_Mur2 SINE Alu 42 147 -2 5 1518 272 293 14 64 chr3 122324641 122324733 -37275050 + BC1_Mm scRNA scRNA 2 95 -57 5 1518 291 111 22 0 chr3 122324742 122324787 -37274996 + MT2A LTR ERVL 31 76 -457 5 1518 2162 154 21 3 chr3 122325115 122325454 -37274329 - ORR1A1 LTR MaLR 0 346 2 5 1518 282 293 82 57 chr3 122325454 122325613 -37274170 - RSINE1 SINE B4 0 165 3 5 1518 4565 79 21 5 chr3 122325625 122326200 -37273583 - MT2B2 LTR ERVL 0 584 1 5 1518 180 0 0 0 chr3 122326588 122326608 -37273175 + (TC)n Simple_repeat Simple_repeat 1 20 0 5 1518 509 266 57 0 chr3 122327423 122327547 -37272236 + ID_B1 SINE B4 88 218 -6 6 1518 273 118 56 56 chr3 122327502 122327556 -37272227 + PB1D7 SINE Alu 67 120 0 6 1518 505 188 12 213 chr3 122327994 122328163 -37271620 + B1F2 SINE Alu 15 149 0 6 1518 189 0 0 0 chr3 122328163 122328184 -37271599 + (A)n Simple_repeat Simple_repeat 1 21 0 6 1518 772 215 77 41 chr3 122328197 122328391 -37271392 + B3 SINE B2 15 215 -1 6 1518 836 264 5 33 chr3 122328522 122328737 -37271046 - B3 SINE B2 -7 209 1 6 1518 657 244 31 0 chr3 122328891 122329018 -37270765 + ID_B1 SINE B4 84 214 -10 6 1518 986 220 43 93 chr3 122329034 122329410 -37270373 - RLTR15 LTR ERVK -2 357 1 6 1518 573 268 0 26 chr3 122329434 122329587 -37270196 - B1F SINE Alu 0 149 1 6 1518 567 199 132 0 chr3 122329642 122329793 -37269990 - MLT-int LTR MaLR -8 1727 1557 6 1518 1276 145 0 83 chr3 122329842 122330082 -37269701 - URR1B DNA MER1_type 0 225 6 6 1518 508 256 32 17 chr3 122330139 122330307 -37269476 - B3A SINE B2 -3 190 16 6 1518 286 360 34 0 chr3 122330320 122330409 -37269374 - B1F1 SINE Alu -40 109 18 6 1518 359 366 23 11 chr3 122330454 122330631 -37269152 - MLT-int LTR MaLR -166 1569 1391 6 1518 821 199 12 36 chr3 122330691 122330858 -37268925 - RSINE1 SINE B4 0 165 3 6 1518 283 392 95 42 chr3 122330860 122331049 -37268734 - MLT-int LTR MaLR -352 1383 1185 6 1518 333 245 160 73 chr3 122331053 122331203 -37268580 - RMER15 LTR ERVL -7 568 406 6 1518 1104 314 55 70 chr3 122331488 122332015 -37267768 - MLT-int LTR MaLR -636 1099 581 6 1518 378 0 0 0 chr3 122332140 122332182 -37267601 + (CA)n Simple_repeat Simple_repeat 2 43 0 6 1518 344 255 109 194 chr3 122332223 122332398 -37267385 + RSINE1 SINE B4 6 165 0 6 1518 286 171 14 14 chr3 122332427 122332498 -37267285 + GA-rich Low_complexity Low_complexity 3 73 0 6 1518 362 208 67 109 chr3 122332871 122332990 -37266793 - PB1D9 SINE Alu -6 114 1 6 1518 448 329 0 27 chr3 122332991 122333138 -37266645 - MLT-int LTR MaLR -1208 527 385 6 1518 281 47 0 23 chr3 122333165 122333209 -37266574 + (TTTTTG)n Simple_repeat Simple_repeat 6 48 0 6 1518 1218 61 0 39 chr3 122333209 122333362 -37266421 - B1_Mm SINE Alu 0 147 1 6 1518 738 176 143 46 chr3 122333440 122333636 -37266147 - B3 SINE B2 -1 215 1 6 1518 621 287 128 7 chr3 122333640 122333921 -37265862 - MLT-int LTR MaLR -1419 316 2 6 1518 459 0 0 0 chr3 122334328 122334379 -37265404 + (TC)n Simple_repeat Simple_repeat 2 52 0 6 1518 297 0 0 0 chr3 122334379 122334411 -37265372 + (TG)n Simple_repeat Simple_repeat 2 34 0 6 1518 375 23 0 0 chr3 122334412 122334456 -37265327 + (GA)n Simple_repeat Simple_repeat 2 45 0 6 1518 210 147 29 0 chr3 122334468 122334502 -37265281 - PB1 SINE Alu -29 98 64 6 1518 488 261 169 22 chr3 122334636 122334820 -37264963 + B3 SINE B2 1 211 -5 6 1518 300 262 0 36 chr3 122335249 122335360 -37264423 + GA-rich Low_complexity Low_complexity 1 107 0 6 1518 249 179 60 0 chr3 122336807 122336874 -37262909 + MER53 DNA hAT 118 188 -5 6 1518 568 294 12 8 chr3 122336982 122337137 -37262646 - ID_B1 SINE B4 -57 235 81 6 1518 322 286 29 43 chr3 122337324 122337463 -37262320 + B1F SINE Alu 5 141 -8 6 1518 189 74 0 0 chr3 122337508 122337535 -37262248 + (GAAA)n Simple_repeat Simple_repeat 3 29 0 6 1518 305 340 104 0 chr3 122337538 122337682 -37262101 + HAL1-3A_ME LINE L1 2286 2444 -414 6 1518 198 0 0 0 chr3 122337977 122337999 -37261784 + (CAAA)n Simple_repeat Simple_repeat 1 22 0 6 1518 660 229 45 60 chr3 122338646 122338846 -37260937 + B3A SINE B2 2 198 0 6 1518 23 0 0 0 chr3 122338846 122338869 -37260914 + AT_rich Low_complexity Low_complexity 1 23 0 6 1518 403 326 10 0 chr3 122339287 122339385 -37260398 - PB1D10 SINE Alu -17 100 2 6 1518 229 155 0 33 chr3 122339389 122339449 -37260334 + (TA)n Simple_repeat Simple_repeat 1 58 0 6 1518 628 230 48 48 chr3 122339449 122339595 -37260188 - B3 SINE B2 -7 209 64 6 1518 273 242 16 0 chr3 122339640 122339702 -37260081 - B4A SINE B4 -18 274 212 6 1518 227 235 0 0 chr3 122339707 122339758 -37260025 - B3 SINE B2 -8 208 158 6 1518 235 262 280 45 chr3 122339887 122340019 -37259764 - RSINE1 SINE B4 0 165 3 6 1518 671 238 21 14 chr3 122340048 122340193 -37259590 + RSINE1 SINE B4 3 148 -17 6 1518 1631 32 16 11 chr3 122341098 122341288 -37258495 - B2_Mm1a SINE B2 0 193 3 6 1518 2324 125 21 107 chr3 122342932 122342995 -37256788 - ORR1B1 LTR MaLR 0 394 353 6 1518 1029 31 124 0 chr3 122342995 122343124 -37256659 - B1_Mus1 SINE Alu -1 147 3 6 1518 2324 125 21 107 chr3 122343124 122343490 -37256293 - ORR1B1 LTR MaLR -42 352 2 6 1518 4394 191 47 9 chr3 122344528 122345419 -37254364 + L1_Mur3 LINE L1 3490 4414 -1466 6 1518 2038 151 78 25 chr3 122345419 122345778 -37254005 + ORR1C1 LTR MaLR 1 378 0 6 1518 9867 137 61 2 chr3 122345784 122348188 -37251595 + L1VL2 LINE L1 578 3134 -2752 6 1518 207 0 0 0 chr3 122348188 122348211 -37251572 + (CAA)n Simple_repeat Simple_repeat 2 24 0 6 1518 9867 157 77 3 chr3 122348211 122348248 -37251535 + L1VL2 LINE L1 3135 3175 -2711 6 1518 1741 204 71 6 chr3 122348230 122348581 -37251202 + Lx7 LINE L1 6368 6741 -955 6 1518 1274 198 135 66 chr3 122348577 122348859 -37250924 + Lx7 LINE L1 7245 7555 -141 6 1518 189 0 0 0 chr3 122348859 122348880 -37250903 + (TTTA)n Simple_repeat Simple_repeat 4 24 0 6 1518 1274 198 135 66 chr3 122348880 122349020 -37250763 + Lx7 LINE L1 7556 7696 0 6 1518 266 187 13 13 chr3 122349035 122349111 -37250672 + (TG)n Simple_repeat Simple_repeat 2 77 0 6 1518 460 169 11 22 chr3 122349112 122349293 -37250490 + (TCTG)n Simple_repeat Simple_repeat 2 180 0 6 1518 205 152 0 0 chr3 122349298 122349331 -37250452 + CT-rich Low_complexity Low_complexity 2 34 0 6 1518 215 103 26 0 chr3 122349335 122349374 -37250409 + (TG)n Simple_repeat Simple_repeat 1 40 0 6 1518 3006 127 57 52 chr3 122349789 122350312 -37249471 + RLTR11A2 LTR ERVK 1 526 -1 6 1518 272 300 41 8 chr3 122351519 122351640 -37248143 + Charlie1a DNA MER1_type 1325 1449 -6 6 1518 1435 67 34 0 chr3 122351770 122351949 -37247834 - B2_Mm1t SINE B2 -8 185 1 6 1518 590 213 77 133 chr3 122352075 122352244 -37247539 - B3A SINE B2 -8 187 36 6 1518 1609 62 5 0 chr3 122352244 122352436 -37247347 - B2_Mm1a SINE B2 0 193 1 6 1518 590 208 85 130 chr3 122352436 122352469 -37247314 - B3A SINE B2 -163 35 8 6 1518 215 305 0 0 chr3 122352881 122352940 -37246843 + (TG)n Simple_repeat Simple_repeat 1 59 0 6 1518 459 306 86 75 chr3 122352985 122353253 -37246530 - B4 SINE B4 -17 275 5 6 1518 1435 45 57 6 chr3 122353744 122353921 -37245862 + B2_Mm2 SINE B2 1 186 -9 6 1518 1068 141 0 0 chr3 122354120 122354297 -37245486 + (TCTCC)n Simple_repeat Simple_repeat 4 180 0 6 1518 204 40 0 0 chr3 122354298 122354323 -37245460 + (TTTTC)n Simple_repeat Simple_repeat 3 27 0 6 1518 409 273 189 20 chr3 122354772 122354925 -37244858 - B3A SINE B2 -18 180 2 6 1518 407 321 54 37 chr3 122355617 122355911 -37243872 - Lx7 LINE L1 -1505 6191 5893 6 1518 766 277 61 58 chr3 122355970 122356296 -37243487 + L1M3 LINE L1 3640 3970 -2170 6 1518 1474 74 21 16 chr3 122356296 122356488 -37243295 + B2_Mm2 SINE B2 2 194 -1 6 1518 766 277 61 58 chr3 122356488 122356571 -37243212 + L1M3 LINE L1 3971 4050 -2090 6 1518 265 321 29 12 chr3 122356682 122356852 -37242931 + L1_Mur3 LINE L1 1476 1648 -4232 6 1518 350 303 99 0 chr3 122356863 122357015 -37242768 + L1M3 LINE L1 5041 5207 -936 6 1518 3176 33 190 2 chr3 122357140 122357540 -37242243 + IAPLTR2_Mm LTR ERVK 1 475 0 6 1518 1176 67 68 68 chr3 122357559 122357751 -37242032 + IAPEz-int LTR ERVK 4 195 -6286 6 1518 231 273 0 0 chr3 122357760 122357804 -37241979 + RLTR27 LTR ERVK 232 275 -34 6 1518 239 327 0 0 chr3 122357830 122357885 -37241898 + RLTR27 LTR ERVK 221 275 -34 6 1518 3716 74 20 39 chr3 122357885 122358538 -37241245 + IAPEz-int LTR ERVK 168 662 -5819 6 1518 2732 61 0 3 chr3 122358538 122358881 -37240902 + IAPEz-int LTR ERVK 1359 1700 -4781 6 1518 6409 56 12 19 chr3 122358874 122359709 -37240074 + IAPEz-int LTR ERVK 5651 6479 -2 6 1518 3190 30 190 2 chr3 122359711 122360111 -37239672 + IAPLTR2_Mm LTR ERVK 1 475 0 6 1518 785 244 26 26 chr3 122360116 122360347 -37239436 - RLTR15 LTR ERVK -128 231 1 6 1518 717 281 69 73 chr3 122360349 122360771 -37239012 + L1_Rod LINE L1 5140 5559 -288 6 1518 1472 60 11 21 chr3 122360905 122361093 -37238690 + B2_Mm1t SINE B2 3 188 -5 6 1518 240 250 0 0 chr3 122361124 122361172 -37238611 - MTC LTR MaLR -49 372 325 6 1518 1070 294 72 50 chr3 122361154 122361609 -37238174 + ORR1D-int LTR MaLR 354 818 -552 6 1518 1630 246 102 34 chr3 122362113 122362613 -37237170 + RMER5 LTR ERV1 1 534 0 6 1518 180 0 0 103 chr3 122363030 122363069 -37236714 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 6 1518 220 105 85 34 chr3 122363327 122363386 -37236397 + (TTAAA)n Simple_repeat Simple_repeat 3 64 0 6 1518 1457 233 73 19 chr3 122363640 122364012 -37235771 - Lx9 LINE L1 -594 7050 6659 6 1518 1399 297 94 11 chr3 122364013 122364728 -37235055 + L1MA4A LINE L1 5127 5937 -242 6 1518 203 133 22 0 chr3 122364765 122364810 -37234973 + (TG)n Simple_repeat Simple_repeat 1 46 0 6 1518 277 345 67 0 chr3 122365751 122365870 -37233913 - Charlie8 DNA MER1_type -2170 258 132 6 1518 3114 155 124 13 chr3 122366754 122367304 -37232479 + RMER19C LTR ERVK 1 611 0 6 1518 235 236 157 0 chr3 122367542 122367631 -37232152 - L1MA6 LINE L1 -20 6280 6178 6 1518 875 175 0 11 chr3 122368274 122368453 -37231330 + CT-rich Low_complexity Low_complexity 3 179 0 6 1518 846 229 105 30 chr3 122368529 122368583 -37231200 - L1MA6 LINE L1 -254 6046 5995 6 1518 2334 101 82 0 chr3 122368583 122368911 -37230872 + IAPEY2_LTR LTR ERVK 1 355 -2 6 1518 846 229 105 30 chr3 122368911 122369090 -37230693 - L1MA6 LINE L1 -306 5994 5793 6 1518 222 37 0 0 chr3 122369090 122369117 -37230666 + (CA)n Simple_repeat Simple_repeat 2 28 0 6 1518 846 229 105 30 chr3 122369117 122369215 -37230568 - L1MA6 LINE L1 -508 5792 5691 6 1518 209 135 19 0 chr3 122369481 122369533 -37230250 + A-rich Low_complexity Low_complexity 2 54 0 6 1518 254 348 70 11 chr3 122370176 122370362 -37229421 + L1MA5 LINE L1 1207 1403 -4444 6 1518 930 139 0 32 chr3 122370407 122370593 -37229190 + GA-rich Low_complexity Low_complexity 1 180 0 6 1518 1441 285 94 108 chr3 122370617 122371753 -37228030 + L1MA5 LINE L1 4830 6025 -275 6 1518 338 223 9 55 chr3 122371890 122371999 -37227784 - L1_Rod LINE L1 -431 5416 5313 6 1518 1617 292 202 48 chr3 122372007 122372996 -37226787 + Lx8 LINE L1 6258 7398 -75 6 1518 202 136 22 43 chr3 122373020 122373066 -37226717 + (TTAA)n Simple_repeat Simple_repeat 1 45 0 6 1518 313 281 85 68 chr3 122373126 122373302 -37226481 - MER46C DNA MER2_type -157 181 3 6 1518 21 36 0 0 chr3 122373438 122373466 -37226317 + AT_rich Low_complexity Low_complexity 1 28 0 6 1518 249 108 0 0 chr3 122373614 122373651 -37226132 + (A)n Simple_repeat Simple_repeat 1 37 0 6 1518 905 162 2 16 chr3 122373656 122373822 -37225961 + MTD LTR MaLR 1 149 -251 7 1518 289 185 101 0 chr3 122373824 122373943 -37225840 + (TAGTG)n Simple_repeat Simple_repeat 3 133 0 7 1518 889 234 154 0 chr3 122373984 122374229 -37225554 + MTD LTR MaLR 124 419 0 7 1518 321 26 0 0 chr3 122374276 122374314 -37225469 + (GA)n Simple_repeat Simple_repeat 2 39 0 7 1518 3930 51 31 0 chr3 122374536 122374989 -37224794 - L1_Mus1 LINE L1 0 6567 6101 7 1518 526 310 34 28 chr3 122375081 122375257 -37224526 + B3A SINE B2 2 178 -20 7 1518 7930 64 31 17 chr3 122376649 122377916 -37221867 - L1_Mus3 LINE L1 -1 6637 5346 7 1518 796 232 71 10 chr3 122378207 122378415 -37221368 - B3A SINE B2 -5 211 1 7 1518 27 29 0 0 chr3 122378456 122378490 -37221293 + AT_rich Low_complexity Low_complexity 1 34 0 7 1518 392 255 37 28 chr3 122378626 122378735 -37221048 + PB1D10 SINE Alu 1 110 -7 7 1518 231 156 22 22 chr3 122378737 122378783 -37221000 + GA-rich Low_complexity Low_complexity 5 50 0 7 1518 27 49 0 0 chr3 122378888 122378929 -37220854 + AT_rich Low_complexity Low_complexity 1 41 0 7 1518 249 33 0 0 chr3 122379776 122379806 -37219977 + (CAAA)n Simple_repeat Simple_repeat 4 33 0 7 1518 234 0 0 0 chr3 122380098 122380124 -37219659 + (TGGGGG)n Simple_repeat Simple_repeat 3 28 0 7 1518 1330 186 14 5 chr3 122380691 122380913 -37218870 - URR1B DNA MER1_type -1 224 1 7 1518 1032 255 52 40 chr3 122382090 122382707 -37217076 + L1_Mur3 LINE L1 901 1533 -4347 7 1518 1888 263 90 39 chr3 122382759 122383559 -37216224 + L1_Mur3 LINE L1 2804 3644 -2236 7 1518 378 0 0 0 chr3 122383559 122383601 -37216182 + (CAA)n Simple_repeat Simple_repeat 3 44 0 7 1518 3468 234 53 8 chr3 122383712 122384504 -37215279 + RMER1B Other Other 65 892 -174 7 1518 601 220 0 0 chr3 122384498 122384607 -37215176 + Lx7 LINE L1 5594 5702 -1994 7 1518 702 94 0 25 chr3 122385011 122385131 -37214652 + (GGA)n Simple_repeat Simple_repeat 2 118 0 7 1518 261 0 0 0 chr3 122386452 122386481 -37213302 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 7 1518 711 101 9 0 chr3 122386481 122386590 -37213193 + RMER1A Other Other 916 1025 -5 7 1518 309 206 44 0 chr3 122387130 122387198 -37212585 + RMER20A LTR ERVK 11 81 -435 7 1518 468 176 37 0 chr3 122387195 122387303 -37212480 + RMER20A LTR ERVK 230 341 -175 7 1518 498 111 0 0 chr3 122388293 122388374 -37211409 - Lx LINE L1 0 6654 6574 7 1518 22 0 0 0 chr3 122388973 122388995 -37210788 + AT_rich Low_complexity Low_complexity 1 22 0 7 1518 273 293 65 112 chr3 122389167 122389336 -37210447 - MER63B DNA AcHobo 0 436 276 7 1518 368 91 0 15 chr3 122389579 122389646 -37210137 + (TCTG)n Simple_repeat Simple_repeat 3 68 0 7 1518 186 43 0 0 chr3 122389652 122389675 -37210108 + (TCCC)n Simple_repeat Simple_repeat 2 24 0 7 1518 1366 217 213 58 chr3 122389802 122390266 -37209517 + Lx7 LINE L1 7161 7696 0 7 1518 247 229 16 0 chr3 122390279 122390338 -37209445 - Charlie1a DNA MER1_type -1126 329 270 7 1518 762 122 0 0 chr3 122390338 122390445 -37209338 + B2_Mm2 SINE B2 1 107 -88 7 1518 180 158 0 0 chr3 122390510 122390548 -37209235 + G-rich Low_complexity Low_complexity 1 38 0 7 1518 678 133 0 0 chr3 122390693 122390806 -37208977 + (GGA)n Simple_repeat Simple_repeat 3 115 0 7 1518 252 0 0 0 chr3 122391004 122391032 -37208751 + (T)n Simple_repeat Simple_repeat 1 28 0 7 1518 1291 54 0 0 chr3 122391032 122391179 -37208604 - B1_Mus1 SINE Alu 0 148 2 7 1518 277 321 51 51 chr3 122391742 122391880 -37207903 - LTR88b LTR Gypsy? -613 224 87 7 1518 451 286 87 87 chr3 122392366 122392642 -37207141 + B4 SINE B4 1 276 -16 7 1518 349 234 73 20 chr3 122392804 122392954 -37206829 + L1_Rod LINE L1 4869 5073 -1070 7 1518 2688 184 63 22 chr3 122393877 122394416 -37205367 - Lx5 LINE L1 0 7050 6490 7 1518 253 224 49 49 chr3 122394857 122394918 -37204865 + PB1D10 SINE Alu 6 66 -51 7 1518 292 261 129 11 chr3 122395078 122395171 -37204612 - MLT1J2 LTR MaLR -266 182 79 7 1518 455 252 35 26 chr3 122395527 122395641 -37204142 + PB1D10 SINE Alu 2 116 -1 7 1518 539 269 7 28 chr3 122395682 122395703 -37204080 + ID_B1 SINE B4 70 211 -13 7 1518 789 177 8 0 chr3 122395703 122395827 -37203956 + B1_Mus1 SINE Alu 11 135 -13 7 1518 219 36 0 0 chr3 122395829 122395857 -37203926 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 7 1518 200 143 24 0 chr3 122395867 122395909 -37203874 + (CCAA)n Simple_repeat Simple_repeat 2 44 0 7 1518 294 296 201 16 chr3 122396091 122396335 -37203448 + L2 LINE L2 2439 2727 -692 7 1518 579 92 0 0 chr3 122396351 122396438 -37203345 + (CA)n Simple_repeat Simple_repeat 2 88 0 7 1518 210 208 0 0 chr3 122396447 122396495 -37203288 + GA-rich Low_complexity Low_complexity 6 53 0 7 1518 24 85 0 0 chr3 122396533 122396592 -37203191 + AT_rich Low_complexity Low_complexity 1 59 0 7 1518 996 92 7 0 chr3 122396921 122397063 -37202720 + URR1B DNA MER1_type 83 225 0 7 1518 3181 68 5 25 chr3 122397238 122397642 -37202141 - MTA_Mm LTR MaLR 0 396 1 7 1518 1870 168 26 119 chr3 122397667 122397849 -37201934 - MTD LTR MaLR -38 381 207 7 1518 926 100 7 0 chr3 122397849 122397989 -37201794 + (TTTTC)n Simple_repeat Simple_repeat 3 143 0 7 1518 1870 168 26 119 chr3 122397989 122398018 -37201765 - MTD LTR MaLR -213 206 206 7 1518 1461 84 0 5 chr3 122398018 122398210 -37201573 - L1_Mus2 LINE L1 0 6566 6376 7 1518 1870 168 26 119 chr3 122398210 122398417 -37201366 - MTD LTR MaLR -213 206 1 7 1518 247 275 122 58 chr3 122398628 122398833 -37200950 + L1M4 LINE L1 4034 4251 -1895 7 1518 814 195 88 0 chr3 122398933 122399092 -37200691 + ORR1C2 LTR MaLR 5 177 -207 7 1518 326 61 20 0 chr3 122399093 122399142 -37200641 + (TCTCTG)n Simple_repeat Simple_repeat 4 53 0 7 1518 221 265 12 0 chr3 122399177 122399260 -37200523 + CT-rich Low_complexity Low_complexity 1 84 0 7 1518 946 178 113 0 chr3 122399271 122399456 -37200327 + ORR1C2 LTR MaLR 179 384 0 7 1518 582 259 43 12 chr3 122399456 122399620 -37200163 - RMER15 LTR ERVL -20 555 387 7 1518 745 335 42 31 chr3 122399885 122400365 -37199418 + L1M4 LINE L1 4290 4769 -1377 7 1518 342 261 42 48 chr3 122400380 122400398 -37199385 + CYRA11_Mm Unknown Y-chromosome 158 174 -443 7 1518 867 147 186 0 chr3 122400398 122400575 -37199208 - URR1B DNA MER1_type -3 222 13 7 1518 387 0 0 0 chr3 122401349 122401392 -37198391 + (CA)n Simple_repeat Simple_repeat 2 44 0 7 1518 1933 106 19 23 chr3 122401401 122401710 -37198073 - Lx2A LINE L1 -6 7002 6695 7 1518 2514 173 54 48 chr3 122402286 122402827 -37196956 - RLTR20B3 LTR ERVK -13 564 21 7 1518 1149 219 72 11 chr3 122403110 122403464 -37196319 - MTD LTR MaLR 0 419 2 7 1518 27 20 0 57 chr3 122403898 122403951 -37195832 + AT_rich Low_complexity Low_complexity 1 50 0 7 1518 405 0 0 0 chr3 122403954 122403999 -37195784 + (CA)n Simple_repeat Simple_repeat 2 46 0 7 1518 431 281 0 0 chr3 122404783 122404897 -37194886 - MER83B-int LTR ERV1 -3907 973 860 7 1518 960 129 11 11 chr3 122405260 122405272 -37194511 + polypurine Low_complexity Low_complexity 1 12 0 7 1518 1363 39 0 22 chr3 122405272 122405456 -37194327 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 7 1518 960 129 11 11 chr3 122405456 122405506 -37194277 + polypurine Low_complexity Low_complexity 13 64 0 7 1518 1268 72 0 11 chr3 122405506 122405688 -37194095 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 7 1518 960 129 11 11 chr3 122405688 122405804 -37193979 + polypurine Low_complexity Low_complexity 65 180 0 7 1518 293 103 0 0 chr3 122405804 122405843 -37193940 + (GGAA)n Simple_repeat Simple_repeat 1 39 0 7 1518 429 20 0 0 chr3 122405843 122405893 -37193890 + (GAGAA)n Simple_repeat Simple_repeat 1 50 0 7 1518 444 118 0 0 chr3 122406366 122406434 -37193349 + (TG)n Simple_repeat Simple_repeat 1 68 0 7 1518 424 309 62 56 chr3 122406436 122406580 -37193203 - B3A SINE B2 -52 146 2 7 1518 329 297 86 26 chr3 122406623 122406775 -37193008 + MLT1A1 LTR MaLR 248 408 0 7 1518 247 316 62 37 chr3 122408239 122408400 -37191383 - MIR SINE MIR -79 183 19 7 1518 2077 157 28 62 chr3 122408990 122409377 -37190406 + ORR1D1 LTR MaLR 1 374 0 7 1518 3076 191 35 0 chr3 122409709 122410226 -37189557 + Lx5 LINE L1 6441 6975 -75 7 1518 204 67 0 0 chr3 122410243 122410273 -37189510 + (TAAA)n Simple_repeat Simple_repeat 4 33 0 7 1518 2383 106 12 9 chr3 122410280 122410604 -37189179 + ORR1A2 LTR MaLR 1 325 -2 7 1518 297 0 0 0 chr3 122410604 122410637 -37189146 + (CAAT)n Simple_repeat Simple_repeat 1 33 0 7 1518 937 249 33 14 chr3 122411038 122411250 -37188533 + B3 SINE B2 1 216 0 7 1518 217 335 158 42 chr3 122411553 122411768 -37188015 - MIRb SINE MIR -6 262 23 7 1518 540 92 53 45 chr3 122412335 122412699 -37187084 + (CA)n Simple_repeat Simple_repeat 1 367 0 7 1518 664 77 45 34 chr3 122412717 122412893 -37186890 + (CA)n Simple_repeat Simple_repeat 2 179 0 7 1518 478 300 140 33 chr3 122412992 122413485 -37186298 - L1ME2 LINE L1 -180 5984 5418 7 1518 538 263 33 19 chr3 122413485 122413650 -37186133 + ID_B1 SINE B4 65 223 -1 7 1518 908 253 117 40 chr3 122413830 122414130 -37185653 + ORR1D2 LTR MaLR 1 323 -47 7 1518 466 319 12 24 chr3 122414302 122414469 -37185314 - Lx8 LINE L1 -559 6914 6750 7 1518 328 282 24 0 chr3 122414466 122414551 -37185232 - Lx8 LINE L1 -1189 6284 6198 7 1518 447 19 0 0 chr3 122414552 122414604 -37185179 + (TC)n Simple_repeat Simple_repeat 2 53 0 7 1518 267 31 0 0 chr3 122414604 122414635 -37185148 + (TG)n Simple_repeat Simple_repeat 1 32 0 7 1518 381 191 0 0 chr3 122415119 122415182 -37184601 - ORR1D1 LTR MaLR 0 374 312 7 1518 1856 147 138 0 chr3 122415183 122415544 -37184239 + Lx9 LINE L1 7232 7642 -2 7 1518 325 352 28 9 chr3 122415671 122415780 -37184003 - B1F1 SINE Alu -2 147 37 7 1518 1220 74 0 0 chr3 122416195 122416343 -37183440 + B1_Mus1 SINE Alu 1 148 0 7 1518 1787 123 45 75 chr3 122416371 122416704 -37183079 + ORR1A2 LTR MaLR 1 323 -4 7 1518 1027 281 104 13 chr3 122417626 122418001 -37181782 + L1MB7 LINE L1 5458 5866 -318 7 1518 650 309 185 9 chr3 122418003 122418225 -37181558 + B4 SINE B4 31 291 -1 8 1518 186 43 0 0 chr3 122418257 122418280 -37181503 + (TTTTA)n Simple_repeat Simple_repeat 4 26 0 8 1518 741 122 0 0 chr3 122418278 122418393 -37181390 + (TTTC)n Simple_repeat Simple_repeat 1 115 0 8 1518 1208 56 0 7 chr3 122418393 122418538 -37181245 - B1_Mus2 SINE Alu -2 145 2 8 1518 360 285 77 16 chr3 122418554 122418736 -37181047 + L1MB7 LINE L1 5879 6071 -107 7 1518 294 322 101 0 chr3 122418877 122419026 -37180757 + MIR SINE MIR 61 224 -38 8 1518 3766 118 25 10 chr3 122419237 122419759 -37180024 - Lx4A LINE L1 0 7058 6529 8 1518 1662 72 4 44 chr3 122419759 122420001 -37179782 + L1_Mur2 LINE L1 4611 4843 -1034 8 1518 498 353 53 87 chr3 122420456 122420869 -37178914 - MLT1G LTR MaLR -14 577 179 8 1519 2438 152 42 15 chr3 122421345 122421753 -37178030 + MTC LTR MaLR 1 419 -2 8 1519 3983 170 76 48 chr3 122422104 122422970 -37176813 - Lx9 LINE L1 0 7644 6755 8 1519 3523 176 161 27 chr3 122422968 122423827 -37175956 - L1_Rod LINE L1 -10 5837 4864 8 1519 793 229 44 26 chr3 122423824 122424097 -37175686 - L1_Rod LINE L1 -2553 3294 3017 8 1519 1548 204 117 20 chr3 122424092 122424501 -37175282 - Lx9 LINE L1 0 7644 7196 8 1519 1933 220 18 32 chr3 122424497 122425000 -37174783 - L1_Rod LINE L1 -2827 3020 2525 8 1519 785 179 251 18 chr3 122425585 122425756 -37174027 - B3 SINE B2 -5 211 1 8 1519 1102 174 96 10 chr3 122426102 122426300 -37173483 - B3 SINE B2 -1 215 1 8 1519 1190 173 46 14 chr3 122426306 122426523 -37173260 + URR1B DNA MER1_type 2 225 0 8 1519 386 332 70 26 chr3 122426879 122427108 -37172675 - L3b LINE CR1 -70 412 174 8 1519 246 160 0 0 chr3 122427459 122427509 -37172274 + (CAAG)n Simple_repeat Simple_repeat 2 51 0 8 1519 1257 244 47 66 chr3 122427878 122428300 -37171483 - L1_Rod LINE L1 -678 5169 4756 8 1519 538 274 47 37 chr3 122428306 122428542 -37171241 - L1M2 LINE L1 -2310 3836 3600 8 1519 270 0 0 0 chr3 122428542 122428572 -37171211 + (TTCC)n Simple_repeat Simple_repeat 4 33 0 8 1519 242 233 68 0 chr3 122428573 122428646 -37171137 - L1_Mur2 LINE L1 -2294 3583 3506 8 1519 257 229 16 0 chr3 122428649 122428710 -37171073 - L1_Rod LINE L1 -3640 2207 2146 8 1519 700 235 45 8 chr3 122428730 122428863 -37170920 + B1_Mur1 SINE Alu 1 138 -11 8 1519 245 29 29 0 chr3 122428864 122428898 -37170885 + (CAA)n Simple_repeat Simple_repeat 3 37 0 8 1519 312 27 0 0 chr3 122428956 122428993 -37170790 + (TG)n Simple_repeat Simple_repeat 2 38 0 8 1519 2204 244 100 23 chr3 122429000 122430067 -37169716 - L1_Rod LINE L1 -3784 2063 905 8 1519 1512 114 147 14 chr3 122430375 122430660 -37169123 - Lx LINE L1 -5 6649 6327 8 1519 1726 26 11 0 chr3 122430673 122430864 -37168919 - B2_Mm1a SINE B2 0 193 1 8 1519 247 115 5 9 chr3 122431126 122431184 -37168599 + MTC LTR MaLR 320 403 -18 8 1519 335 105 0 17 chr3 122434531 122434589 -37165194 + (TG)n Simple_repeat Simple_repeat 2 58 0 8 1519 294 282 25 37 chr3 122435347 122435428 -37164355 - ID SINE ID -141 83 4 8 1519 420 246 164 60 chr3 122435437 122435571 -37164212 - B1F1 SINE Alu -1 148 1 8 1519 238 381 41 0 chr3 122437266 122437363 -37162420 + LTR16D LTR ERVL 343 443 -208 8 1519 230 349 72 0 chr3 122437567 122437650 -37162133 - MLT1K LTR MaLR -331 264 176 8 1519 313 295 40 23 chr3 122437833 122437948 -37161835 - B1F SINE Alu -2 148 34 8 1519 272 248 58 19 chr3 122439033 122439136 -37160647 - MER20B DNA MER1_type -676 107 1 8 1519 26 0 0 0 chr3 122440516 122440542 -37159241 + AT_rich Low_complexity Low_complexity 1 26 0 8 1519 723 262 6 12 chr3 122440639 122440805 -37158978 - RSINE1 SINE B4 0 165 1 8 1519 305 266 58 95 chr3 122441510 122441600 -37158183 + B3 SINE B2 77 162 -54 8 1519 641 63 11 0 chr3 122441600 122441695 -37158088 + (TAGA)n Simple_repeat Simple_repeat 4 99 0 8 1519 305 266 58 95 chr3 122441695 122441741 -37158042 + B3 SINE B2 163 208 -8 8 1519 999 158 15 66 chr3 122441793 122441989 -37157794 + B2_Mm2 SINE B2 1 186 -9 8 1519 471 35 0 0 chr3 122442027 122442084 -37157699 + (TA)n Simple_repeat Simple_repeat 2 58 0 8 1519 1299 27 0 0 chr3 122442094 122442241 -37157542 - B1_Mus2 SINE Alu 0 147 1 8 1519 198 0 0 0 chr3 122442509 122442531 -37157252 + (CG)n Simple_repeat Simple_repeat 1 22 0 8 1519 396 0 0 0 chr3 122442531 122442574 -37157209 + (TG)n Simple_repeat Simple_repeat 2 45 0 8 1519 537 244 60 121 chr3 122442643 122442900 -37156883 + Lx7 LINE L1 7280 7521 -175 8 1519 357 93 0 0 chr3 122442900 122442954 -37156829 + (CAT)n Simple_repeat Simple_repeat 1 54 0 8 1519 537 244 60 121 chr3 122442954 122442998 -37156785 + Lx7 LINE L1 7522 7561 -135 8 1519 1551 85 15 0 chr3 122442998 122443198 -37156585 - L1_Mus1 LINE L1 0 6567 6365 8 1519 537 244 60 121 chr3 122443198 122443226 -37156557 + Lx7 LINE L1 7562 7590 -106 8 1519 627 51 0 0 chr3 122443226 122443305 -37156478 + (TC)n Simple_repeat Simple_repeat 2 80 0 8 1519 792 170 27 47 chr3 122443307 122443455 -37156328 - B1_Mur3 SINE Alu -4 145 1 8 1519 233 162 0 0 chr3 122443425 122443462 -37156321 - MT2B LTR ERVL -314 287 251 8 1519 21 36 0 0 chr3 122443469 122443497 -37156286 + AT_rich Low_complexity Low_complexity 1 28 0 8 1519 442 263 34 8 chr3 122443737 122443856 -37155927 - ID_B1 SINE B4 -5 219 98 8 1519 2014 197 14 19 chr3 122443878 122444298 -37155485 + MTD LTR MaLR 1 418 -1 8 1519 1877 142 88 12 chr3 122444738 122445079 -37154704 - ORR1B2 LTR MaLR 0 367 1 8 1519 395 306 114 38 chr3 122446377 122446720 -37153063 + Lx8 LINE L1 6896 7264 -209 8 1519 353 235 25 0 chr3 122446721 122446802 -37152981 + RMER15 LTR ERVL 403 485 -90 8 1519 794 243 52 29 chr3 122447197 122447371 -37152412 + B3 SINE B2 2 179 -37 8 1519 273 367 0 10 chr3 122447414 122447513 -37152270 - MIRb SINE MIR -121 147 50 8 1519 312 91 0 0 chr3 122447845 122447889 -37151894 - MER53 DNA hAT -8 185 142 8 1519 22 35 0 0 chr3 122448157 122448186 -37151597 + AT_rich Low_complexity Low_complexity 1 29 0 8 1519 1465 214 91 9 chr3 122448629 122448968 -37150815 + ORR1D1 LTR MaLR 6 372 -2 8 1519 3305 145 18 58 chr3 122448970 122449202 -37150581 + ORR1D1-int LTR MaLR 1 235 -1135 8 1519 3649 168 23 58 chr3 122449202 122449948 -37149835 - RMER6D LTR ERVK 0 720 1 8 1519 3305 145 18 58 chr3 122449948 122450321 -37149462 + ORR1D1-int LTR MaLR 236 582 -788 8 1519 224 288 51 0 chr3 122450370 122450429 -37149354 - ID4_ SINE ID -21 62 1 8 1519 234 91 0 0 chr3 122450651 122450684 -37149099 + (TG)n Simple_repeat Simple_repeat 2 34 0 8 1519 241 246 115 0 chr3 122451514 122451575 -37148208 + ID4_ SINE ID 4 71 -12 8 1519 722 81 0 9 chr3 122451954 122452066 -37147717 + (TTTC)n Simple_repeat Simple_repeat 2 112 0 8 1519 1240 294 183 63 chr3 122452210 122452649 -37147134 - L1M2 LINE L1 -474 6108 5689 8 1519 962 110 21 0 chr3 122452649 122452794 -37146989 - B1_Mus1 SINE Alu 0 148 1 8 1519 1399 290 99 51 chr3 122452794 122453972 -37145811 - L1M2 LINE L1 -894 5688 4309 8 1519 484 309 45 63 chr3 122453983 122454019 -37145764 - L1M2 LINE L1 -3271 3574 3541 8 1519 986 53 88 29 chr3 122454019 122454156 -37145627 - B1_Mus2 SINE Alu -2 145 1 8 1519 484 309 45 63 chr3 122454156 122454803 -37144980 - L1M2 LINE L1 -3305 3540 2903 8 1519 249 33 0 0 chr3 122454810 122454840 -37144943 + (TTTA)n Simple_repeat Simple_repeat 4 33 0 8 1519 1181 65 0 13 chr3 122454841 122454997 -37144786 - B2_Mm2 SINE B2 -41 154 1 8 1519 189 0 0 0 chr3 122455005 122455026 -37144757 + (T)n Simple_repeat Simple_repeat 1 21 0 8 1519 244 264 23 0 chr3 122455042 122455129 -37144654 - L1_Rod LINE L1 -3643 2204 2116 8 1519 599 328 47 15 chr3 122455259 122455732 -37144051 - L1M2 LINE L1 -4190 2659 2172 8 1519 364 325 70 37 chr3 122455874 122456150 -37143633 - L1M2 LINE L1 -5113 1738 1351 8 1519 654 270 14 54 chr3 122457013 122457236 -37142547 - B3 SINE B2 -2 214 1 8 1519 210 37 0 0 chr3 122457566 122457593 -37142190 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 8 1519 289 114 22 89 chr3 122458194 122458329 -37141454 + (CACCC)n Simple_repeat Simple_repeat 2 127 0 8 1519 228 273 146 53 chr3 122459059 122459210 -37140573 - Charlie14a DNA MER1_type -16 1148 984 8 1519 468 0 0 0 chr3 122460284 122460336 -37139447 + (TG)n Simple_repeat Simple_repeat 2 53 0 8 1519 614 260 47 0 chr3 122460338 122460465 -37139318 - RSINE1 SINE B4 -30 135 3 8 1519 346 280 63 0 chr3 122460640 122460783 -37139000 - L1MC4 LINE L1 -368 7674 7523 8 1519 280 361 84 11 chr3 122461727 122461906 -37137877 + MARNA DNA Mariner 239 430 -156 8 1519 540 243 105 26 chr3 122462341 122462493 -37137290 + B3A SINE B2 3 166 -32 8 1519 405 0 0 0 chr3 122462493 122462538 -37137245 + (CA)n Simple_repeat Simple_repeat 1 45 0 8 1519 1250 41 0 0 chr3 122464221 122464368 -37135415 - B1_Mm SINE Alu 0 147 1 8 1519 186 309 0 18 chr3 122464654 122464710 -37135073 + MER5B DNA MER1_type 7 61 -117 8 1519 1126 309 132 7 chr3 122464716 122465163 -37134620 - MLT2B2 LTR ERVL -6 509 7 8 1519 997 247 132 27 chr3 122465189 122465522 -37134261 - ORR1D2 LTR MaLR 0 370 3 8 1519 266 267 74 55 chr3 122466770 122466899 -37132884 + MIRb SINE MIR 47 179 -89 8 1519 396 0 0 0 chr3 122467499 122467543 -37132240 + (CA)n Simple_repeat Simple_repeat 2 45 0 8 1519 633 277 13 25 chr3 122467543 122467694 -37132089 - RSINE1 SINE B4 -13 152 3 8 1519 201 319 41 31 chr3 122468544 122468641 -37131142 + L2 LINE L2 1439 1536 -1883 8 1519 192 234 21 0 chr3 122468822 122468869 -37130914 + L2 LINE L2 1740 1787 -1632 8 1519 28 0 0 0 chr3 122469191 122469219 -37130564 + AT_rich Low_complexity Low_complexity 1 28 0 8 1519 186 320 112 10 chr3 122469394 122469492 -37130291 - MIRb SINE MIR -80 188 81 8 1519 409 279 0 0 chr3 122470621 122470707 -37129076 + PB1D10 SINE Alu 26 111 -6 8 1519 222 91 0 0 chr3 122470708 122470741 -37129042 + (TAA)n Simple_repeat Simple_repeat 3 35 0 8 1519 516 196 0 38 chr3 122472123 122472229 -37127554 - MTC LTR MaLR 0 421 320 8 1519 452 204 28 84 chr3 122472986 122473093 -37126690 + B1F SINE Alu 48 148 -1 8 1519 522 0 0 0 chr3 122473441 122473499 -37126284 + (CA)n Simple_repeat Simple_repeat 2 59 0 8 1519 1317 78 0 0 chr3 122473576 122473755 -37126028 + (TTC)n Simple_repeat Simple_repeat 1 179 0 8 1519 279 0 0 0 chr3 122473757 122473788 -37125995 + (TCCC)n Simple_repeat Simple_repeat 2 32 0 8 1519 655 254 0 0 chr3 122473813 122473947 -37125836 - B1F1 SINE Alu -7 142 9 8 1519 869 222 29 10 chr3 122473966 122474171 -37125612 - B3 SINE B2 -6 210 2 9 1519 993 284 62 10 chr3 122474406 122474712 -37125071 + MER2 DNA MER2_type 1 322 -23 9 1519 281 330 0 67 chr3 122475243 122475347 -37124436 + PB1D7 SINE Alu 14 110 -10 9 1519 189 0 0 0 chr3 122477175 122477196 -37122587 + (TG)n Simple_repeat Simple_repeat 2 22 0 9 1519 183 114 0 0 chr3 122479330 122479365 -37120418 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 9 1519 240 333 0 25 chr3 122480525 122480605 -37119178 + ID4_ SINE ID 5 82 -1 9 1519 2093 204 30 10 chr3 122481189 122481684 -37118099 - L1_Mur3 LINE L1 -1324 4556 4052 9 1519 630 302 118 10 chr3 122483640 122483933 -37115850 + B4 SINE B4 2 291 -1 9 1519 455 311 0 0 chr3 122483954 122484134 -37115649 + (CA)n Simple_repeat Simple_repeat 1 180 0 9 1519 378 0 0 0 chr3 122484336 122484378 -37115405 + (TG)n Simple_repeat Simple_repeat 1 42 0 9 1519 423 0 0 0 chr3 122484378 122484424 -37115359 + (GA)n Simple_repeat Simple_repeat 1 47 0 9 1519 6702 113 32 10 chr3 122485175 122487033 -37112750 - Lx LINE L1 0 6654 4761 9 1519 513 304 48 38 chr3 122488096 122488305 -37111478 + ID_B1 SINE B4 1 211 -13 9 1519 2937 89 7 21 chr3 122488826 122489249 -37110534 - Lx4A LINE L1 0 7058 6642 9 1519 554 328 90 40 chr3 122489646 122490046 -37109737 - LTR16B2 LTR ERVL -4 458 39 9 1519 22 0 0 0 chr3 122490409 122490431 -37109352 + AT_rich Low_complexity Low_complexity 1 22 0 9 1519 3408 74 0 25 chr3 122490450 122490922 -37108861 + L1Md_F2 LINE L1 6116 6575 -7 9 1519 770 308 42 1 chr3 122491837 122492159 -37107624 + Lx9 LINE L1 7029 7495 -149 9 1519 801 284 87 0 chr3 122493618 122493917 -37105866 - Lx8 LINE L1 0 7473 7149 9 1519 845 206 27 49 chr3 122493932 122494157 -37105626 + Lx8 LINE L1 6388 6607 -866 9 1519 587 288 31 23 chr3 122494187 122494443 -37105340 - Lx8 LINE L1 -327 7146 6889 9 1519 287 152 0 0 chr3 122494459 122494505 -37105278 - MTD LTR MaLR 0 419 374 9 1519 770 206 0 53 chr3 122494506 122494587 -37105196 - ORR1D1 LTR MaLR -214 160 81 9 1519 1247 176 4 18 chr3 122494587 122494813 -37104970 - URR1A DNA MER1_type -2 224 2 9 1519 770 206 0 53 chr3 122494813 122494900 -37104883 - ORR1D1 LTR MaLR -294 80 1 9 1519 1380 239 95 26 chr3 122494900 122495352 -37104431 - Lx8 LINE L1 -604 6869 6387 9 1519 21 36 0 0 chr3 122495426 122495454 -37104329 + AT_rich Low_complexity Low_complexity 1 28 0 9 1519 354 227 18 0 chr3 122495455 122495565 -37104218 - Lx9 LINE L1 -1 7643 7532 9 1519 474 18 0 0 chr3 122495577 122495632 -37104151 + (TG)n Simple_repeat Simple_repeat 1 55 0 9 1519 492 128 0 0 chr3 122495635 122495713 -37104070 + (GA)n Simple_repeat Simple_repeat 2 79 0 9 1519 3527 199 69 14 chr3 122495721 122495879 -37103904 - Lx9 LINE L1 -177 7467 7311 9 1519 387 0 0 0 chr3 122495879 122495922 -37103861 + (TG)n Simple_repeat Simple_repeat 2 44 0 9 1519 3527 199 69 14 chr3 122495922 122496562 -37103221 - Lx9 LINE L1 -334 7310 6625 9 1519 261 83 0 0 chr3 122496706 122496742 -37103041 + (CA)n Simple_repeat Simple_repeat 1 36 0 9 1519 909 157 128 11 chr3 122496790 122496970 -37102813 - URR1A DNA MER1_type -25 201 1 9 1519 703 225 63 0 chr3 122498505 122498647 -37101136 + RSINE1 SINE B4 3 153 -12 9 1519 234 270 190 0 chr3 122498785 122498885 -37100898 - L2a LINE L2 -1 3425 3307 9 1519 677 150 17 17 chr3 122499011 122499126 -37100657 + PB1D9 SINE Alu 3 117 -3 9 1519 285 336 23 15 chr3 122499206 122499339 -37100444 + MamRep605 Unknown Unknown 50 183 -693 9 1519 279 114 0 0 chr3 122499391 122499435 -37100348 + (TG)n Simple_repeat Simple_repeat 2 45 0 9 1519 423 170 82 33 chr3 122500347 122500461 -37099322 + B1_Mur2 SINE Alu 1 149 0 1 1519 252 125 77 15 chr3 122501190 122501255 -37098528 + (TTATA)n Simple_repeat Simple_repeat 1 69 0 2 1519 2112 302 104 7 chr3 122501260 122502074 -37097709 - Lx8 LINE L1 -311 7162 6270 3 1519 362 180 0 16 chr3 122502074 122502136 -37097647 + Lx9 LINE L1 5838 5898 -1746 4 1519 314 263 209 9 chr3 122502169 122502284 -37097499 - B1_Mur1 SINE Alu -10 139 2 5 1519 508 262 146 11 chr3 122502310 122502495 -37097288 - Lx8 LINE L1 -30 7443 7234 6 1519 239 272 12 24 chr3 122502641 122502724 -37097059 + Lx8 LINE L1 6196 6277 -1196 7 1519 270 312 67 30 chr3 122504054 122504219 -37095564 + Tigger12c DNA MER2_type 542 712 -22 8 1519 26 30 0 0 chr3 122506429 122506462 -37093321 + AT_rich Low_complexity Low_complexity 1 33 0 9 1519 22 70 0 0 chr3 122506651 122506694 -37093089 + AT_rich Low_complexity Low_complexity 1 43 0 1 1519 204 67 0 0 chr3 122507031 122507061 -37092722 + (CA)n Simple_repeat Simple_repeat 1 30 0 1 1519 2865 41 0 3 chr3 122507566 122507910 -37091873 - L1Md_T LINE L1 0 6582 6240 1 1519 296 224 153 46 chr3 122509552 122509683 -37090100 - B1F SINE Alu 0 149 5 1 1519 3562 18 2 0 chr3 122509703 122510098 -37089685 + MTA_Mm LTR MaLR 1 396 0 1 1519 233 89 22 0 chr3 122510961 122511006 -37088777 + (CAAA)n Simple_repeat Simple_repeat 2 47 0 1 1519 847 246 59 0 chr3 122511052 122511255 -37088528 + B3 SINE B2 2 216 0 1 1519 22 0 0 0 chr3 122511835 122511857 -37087926 + AT_rich Low_complexity Low_complexity 1 22 0 1 1519 605 93 0 20 chr3 122512636 122512735 -37087048 + (TATATG)n Simple_repeat Simple_repeat 2 98 0 1 1519 369 0 0 0 chr3 122513097 122513138 -37086645 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 1519 324 304 0 19 chr3 122513295 122513399 -37086384 - MER5A DNA MER1_type 0 189 88 2 1519 471 243 0 37 chr3 122513399 122513506 -37086277 - Lx6 LINE L1 -940 6520 6418 2 1519 2183 175 45 38 chr3 122513506 122513976 -37085807 + RLTR12B LTR ERVK 47 519 -9 2 1519 1346 146 86 82 chr3 122514021 122514312 -37085471 - L1_Mur3 LINE L1 -238 5642 5351 2 1519 8191 141 79 55 chr3 122514308 122514471 -37085312 - L1_Mur3 LINE L1 -2838 3042 2912 2 1519 1013 80 73 0 chr3 122514471 122514608 -37085175 - B1_Mus1 SINE Alu 0 148 2 2 1519 8191 141 79 55 chr3 122514608 122515458 -37084325 - L1_Mur3 LINE L1 -2969 2911 2045 2 1519 305 47 23 0 chr3 122515458 122515501 -37084282 + (TG)n Simple_repeat Simple_repeat 2 45 0 2 1519 8191 154 70 39 chr3 122515501 122517151 -37082632 - L1_Mur3 LINE L1 -3836 2044 301 2 1519 353 257 2 3 chr3 122518460 122518550 -37081233 + PB1D10 SINE Alu 4 92 -56 2 1519 180 0 0 0 chr3 122518914 122518934 -37080849 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 2 1519 270 0 0 0 chr3 122519009 122519039 -37080744 + (TTTG)n Simple_repeat Simple_repeat 3 32 0 2 1519 982 60 0 0 chr3 122519223 122519356 -37080427 + B1_Mus2 SINE Alu 15 147 0 2 1519 893 79 8 0 chr3 122519362 122519489 -37080294 + (GGAGA)n Simple_repeat Simple_repeat 3 130 0 3 1519 1426 17 0 22 chr3 122519492 122519675 -37080108 + (GGAAA)n Simple_repeat Simple_repeat 2 180 0 3 1519 1760 199 64 13 chr3 122520227 122520618 -37079165 + MTD LTR MaLR 1 411 -8 3 1519 437 0 19 0 chr3 122520994 122521047 -37078736 + (TC)n Simple_repeat Simple_repeat 2 55 0 3 1519 261 0 0 0 chr3 122521047 122521075 -37078708 + (TG)n Simple_repeat Simple_repeat 2 30 0 3 1519 30 59 0 0 chr3 122521774 122521825 -37077958 + AT_rich Low_complexity Low_complexity 1 51 0 3 1519 1151 77 24 0 chr3 122522272 122522442 -37077341 + B2_Mm2 SINE B2 15 188 -7 3 1519 210 143 29 0 chr3 122523155 122523190 -37076593 + G-rich Low_complexity Low_complexity 2 37 0 3 1519 207 204 0 0 chr3 122526158 122526202 -37073581 + T-rich Low_complexity Low_complexity 1 44 0 3 1519 1040 110 7 0 chr3 122526202 122526348 -37073435 - B1_Mm SINE Alu 0 147 1 3 1519 514 291 18 31 chr3 122527449 122527612 -37072171 - RSINE1 SINE B4 -3 162 2 4 1519 769 129 0 0 chr3 122528193 122528309 -37071474 + B1_Mur4 SINE Alu 22 137 -13 4 1519 195 42 0 0 chr3 122528313 122528337 -37071446 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 4 1519 257 0 30 0 chr3 122528340 122528373 -37071410 + (GGAA)n Simple_repeat Simple_repeat 4 37 0 4 1519 1187 94 0 6 chr3 122528373 122528554 -37071229 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 4 1519 206 309 108 54 chr3 122528706 122528836 -37070947 + MIRb SINE MIR 48 184 -84 4 1519 22 51 0 48 chr3 122529672 122529734 -37070049 + AT_rich Low_complexity Low_complexity 1 59 0 4 1519 536 276 97 20 chr3 122530479 122530675 -37069108 + ID_B1 SINE B4 3 213 -11 4 1519 561 68 0 0 chr3 122531943 122532017 -37067766 + (TCC)n Simple_repeat Simple_repeat 3 76 0 4 1519 228 250 44 0 chr3 122533175 122533243 -37066540 - PB1D7 SINE Alu -15 105 35 4 1519 18890 60 0 2 chr3 122533382 122535757 -37064026 + L1Md_F2 LINE L1 3217 5586 -297 5 1519 8645 27 4 0 chr3 122535758 122536746 -37063037 + L1Md_F2 LINE L1 5588 6579 -3 5 1519 809 73 11 58 chr3 122537741 122537930 -37061853 + (CA)n Simple_repeat Simple_repeat 1 180 0 5 1519 1094 123 0 11 chr3 122538867 122539048 -37060735 + (TTC)n Simple_repeat Simple_repeat 2 180 0 5 1519 233 186 33 17 chr3 122540029 122540089 -37059694 + tRNA-Ala-GCA tRNA tRNA 2 62 -13 5 1519 233 263 26 26 chr3 122540089 122540104 -37059679 + ID4 SINE ID 8 82 -1 5 1519 467 277 50 0 chr3 122540483 122540624 -37059159 + Tigger9a DNA Tigger 585 732 0 5 1519 438 288 0 8 chr3 122540710 122540836 -37058947 - ID_B1 SINE B4 -19 205 81 5 1519 21 0 0 0 chr3 122540943 122540964 -37058819 + AT_rich Low_complexity Low_complexity 1 21 0 5 1519 634 127 34 0 chr3 122541698 122541816 -37057967 - Lx9 LINE L1 -12 7632 7511 5 1519 333 0 0 0 chr3 122542992 122543029 -37056754 + (CA)n Simple_repeat Simple_repeat 2 38 0 5 1519 57 28 0 0 chr3 122543564 122543635 -37056148 + AT_rich Low_complexity Low_complexity 1 71 0 6 1519 224 293 0 89 chr3 122544460 122544561 -37055222 + PB1D10 SINE Alu 26 117 0 6 1519 545 281 72 15 chr3 122545227 122545422 -37054361 + ID_B1 SINE B4 2 207 -17 6 1519 242 289 13 0 chr3 122546317 122546393 -37053390 - ORR1D-int LTR MaLR -609 761 685 6 1519 4651 261 96 117 chr3 122546409 122547060 -37052723 - L1_Mur3 LINE L1 -1173 4707 4004 6 1519 3845 31 13 0 chr3 122547060 122547511 -37052272 + L1Md_F3 LINE L1 6128 6584 0 6 1519 4651 261 96 117 chr3 122547511 122548190 -37051593 - L1_Mur3 LINE L1 -1877 4003 3280 6 1519 785 239 48 0 chr3 122548190 122548378 -37051405 - B3 SINE B2 -7 209 13 6 1519 4651 261 96 117 chr3 122548378 122548534 -37051249 - L1_Mur3 LINE L1 -1877 3279 3112 6 1519 205 53 79 0 chr3 122548534 122548572 -37051211 + (CATTT)n Simple_repeat Simple_repeat 3 43 0 6 1519 4651 261 96 117 chr3 122548572 122549109 -37050674 - L1_Mur3 LINE L1 -2769 3111 2595 6 1519 2289 73 33 60 chr3 122549109 122549445 -37050338 - ORR1A2 LTR MaLR 0 327 1 6 1519 4651 261 96 117 chr3 122549445 122550083 -37049700 - L1_Mur3 LINE L1 -3286 2594 1919 6 1519 588 84 0 0 chr3 122550156 122550239 -37049544 + (TAGA)n Simple_repeat Simple_repeat 4 86 0 6 1519 377 231 125 0 chr3 122550364 122550468 -37049315 + B3A SINE B2 3 119 -79 7 1519 24 85 0 0 chr3 122550495 122550554 -37049229 + AT_rich Low_complexity Low_complexity 1 59 0 7 1519 35 24 0 0 chr3 122550678 122550720 -37049063 + AT_rich Low_complexity Low_complexity 1 42 0 7 1519 1703 182 168 87 chr3 122550751 122551202 -37048581 + MT2A LTR ERVL 1 488 -45 7 1519 459 0 0 0 chr3 122551202 122551253 -37048530 + (CA)n Simple_repeat Simple_repeat 2 52 0 7 1519 396 0 0 0 chr3 122551253 122551296 -37048487 + (TA)n Simple_repeat Simple_repeat 2 45 0 7 1519 1703 182 168 87 chr3 122551296 122551336 -37048447 + MT2A LTR ERVL 489 532 -1 7 189 5300 216 43 20 chr3 122551336 122552485 -37047298 + MERVL_2A-int LTR ERVL 1 1175 -4586 7 1520 748 152 0 0 chr3 122552520 122552632 -37047151 + B3 SINE B2 2 113 -103 7 1520 3378 164 16 2 chr3 122552687 122553244 -37046539 + MERVL_2A-int LTR ERVL 2780 3344 -2417 7 1520 1164 53 33 0 chr3 122553311 122553463 -37046320 + L1_Mus2 LINE L1 6410 6566 0 7 1520 254 227 122 32 chr3 122553495 122553618 -37046165 + L1MC5 LINE L1 7409 7542 -419 7 1520 1138 229 42 0 chr3 122553669 122553909 -37045874 + Lx9 LINE L1 7157 7406 -238 7 1520 340 0 0 0 chr3 122553904 122553941 -37045842 + L1_Mus1 LINE L1 6292 6328 -239 8 1520 387 0 0 0 chr3 122553959 122554002 -37045781 + (CA)n Simple_repeat Simple_repeat 1 43 0 8 1520 418 244 0 9 chr3 122554017 122554133 -37045650 + Lx9 LINE L1 7530 7644 0 7 1520 226 202 105 23 chr3 122554147 122554233 -37045550 + Lx8 LINE L1 7353 7445 -28 8 1520 234 269 57 19 chr3 122554700 122554806 -37044977 - PB1D10 SINE Alu -7 110 1 8 1520 257 219 14 0 chr3 122555287 122555360 -37044423 + (TA)n Simple_repeat Simple_repeat 2 75 0 8 1520 22 0 0 0 chr3 122555650 122555672 -37044111 + AT_rich Low_complexity Low_complexity 1 22 0 8 1520 1531 145 89 118 chr3 122556384 122556767 -37043016 - ORR1C1 LTR MaLR -3 375 4 8 1520 432 270 129 65 chr3 122557688 122557874 -37041909 - B3A SINE B2 0 198 1 8 1520 474 71 0 0 chr3 122559057 122559092 -37040691 - B1_Mus2 SINE Alu 0 147 113 8 1520 861 78 0 1 chr3 122559092 122559230 -37040553 + B1_Mus2 SINE Alu 3 139 -9 8 1520 279 0 0 0 chr3 122559230 122559261 -37040522 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 9 1520 21 0 0 0 chr3 122559269 122559290 -37040493 + AT_rich Low_complexity Low_complexity 1 21 0 9 1520 226 47 22 44 chr3 122559575 122559620 -37040163 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 9 1520 22 35 0 0 chr3 122560428 122560457 -37039326 + AT_rich Low_complexity Low_complexity 1 29 0 9 1520 189 0 0 0 chr3 122562836 122562857 -37036926 + (TTTG)n Simple_repeat Simple_repeat 4 24 0 9 1520 1317 193 35 7 chr3 122563670 122563952 -37035831 + MTD LTR MaLR 1 290 -129 9 1520 336 182 0 0 chr3 122564000 122564088 -37035695 + (CA)n Simple_repeat Simple_repeat 1 88 0 9 1520 585 0 0 0 chr3 122564090 122564155 -37035628 + (TC)n Simple_repeat Simple_repeat 1 65 0 9 1520 333 299 101 28 chr3 122564185 122564364 -37035419 + Lx8 LINE L1 7276 7467 -6 9 1520 489 161 0 0 chr3 122564836 122564923 -37034860 - MIRc SINE MIR -131 137 51 9 1520 195 69 0 0 chr3 122565012 122565041 -37034742 + (CAG)n Simple_repeat Simple_repeat 2 30 0 1 1520 241 239 0 0 chr3 122565113 122565180 -37034603 + (ATG)n Simple_repeat Simple_repeat 3 69 0 1 1520 409 290 11 0 chr3 122566142 122566235 -37033548 + PB1D10 SINE Alu 10 103 -14 1 1520 530 224 178 23 chr3 122566252 122566426 -37033357 + B3 SINE B2 1 201 -15 1 1520 915 43 121 0 chr3 122566673 122566813 -37032970 + L1_Mus3 LINE L1 6474 6630 -8 1 1520 201 158 0 0 chr3 122567605 122567643 -37032140 + T-rich Low_complexity Low_complexity 1 38 0 1 1520 500 136 18 138 chr3 122567643 122567829 -37031954 - B1_Mus2 SINE Alu 0 149 3 1 1520 231 36 0 0 chr3 122567859 122567887 -37031896 + (TG)n Simple_repeat Simple_repeat 2 29 0 1 1520 757 193 60 12 chr3 122568580 122568748 -37031035 - URR1A DNA MER1_type -38 188 13 1 1520 372 222 102 0 chr3 122568844 122568952 -37030831 - L1_Mur3 LINE L1 -2096 3784 3666 1 1520 263 179 0 43 chr3 122568974 122569044 -37030739 + Lx8 LINE L1 6131 6197 -1276 1 1520 561 198 0 0 chr3 122569045 122569136 -37030647 - 4.5SRNA scRNA scRNA -2 92 2 1 1520 314 200 0 57 chr3 122569137 122569243 -37030540 + Lx6 LINE L1 7335 7434 -26 1 1520 303 273 51 36 chr3 122569261 122569398 -37030385 + Lx8 LINE L1 6191 6329 -1144 1 1520 2037 310 87 52 chr3 122569422 122569522 -37030261 + Lx8 LINE L1 6392 6501 -972 1 1520 898 156 0 7 chr3 122569522 122569540 -37030243 - B1_Mus1 SINE Alu -7 141 124 1 1520 192 77 0 0 chr3 122569540 122569566 -37030217 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1 1520 898 156 0 7 chr3 122569566 122569689 -37030094 - B1_Mus1 SINE Alu -25 123 1 1 1520 2037 310 87 52 chr3 122569689 122570541 -37029242 + Lx8 LINE L1 6502 7377 -96 1 1520 865 268 138 33 chr3 122570662 122570967 -37028816 + MTD LTR MaLR 2 338 -81 1 1520 307 308 192 33 chr3 122571048 122571098 -37028685 + B3A SINE B2 19 80 -118 1 1520 468 0 0 0 chr3 122571098 122571150 -37028633 + (CA)n Simple_repeat Simple_repeat 1 52 0 1 1520 307 282 68 79 chr3 122571150 122571276 -37028507 + B3A SINE B2 79 193 -2 1 1520 718 212 147 0 chr3 122571302 122571486 -37028297 + MTE2b LTR MaLR 169 379 0 1 1520 43 0 0 0 chr3 122571493 122571536 -37028247 + AT_rich Low_complexity Low_complexity 1 43 0 1 1520 4073 252 26 23 chr3 122571536 122572565 -37027218 - Lx9 LINE L1 -126 7518 6487 1 1520 21 0 0 0 chr3 122572645 122572666 -37027117 + AT_rich Low_complexity Low_complexity 1 21 0 1 1520 279 0 0 0 chr3 122573577 122573608 -37026175 + (TG)n Simple_repeat Simple_repeat 1 31 0 1 1520 226 312 198 0 chr3 122573629 122573725 -37026058 + PB1D10 SINE Alu 3 117 0 1 1520 1303 182 113 51 chr3 122573881 122574217 -37025566 + ORR1D1 LTR MaLR 1 357 -17 1 1520 613 251 54 5 chr3 122575043 122575227 -37024556 - RMER5 LTR ERV1 -15 519 327 1 1520 313 257 0 14 chr3 122576290 122576361 -37023422 - L1MC2 LINE L1 -485 5859 5790 1 1520 716 323 37 16 chr3 122576385 122576706 -37023077 + RMER5 LTR ERV1 19 346 -188 1 1520 330 26 0 0 chr3 122576919 122576958 -37022825 + (TA)n Simple_repeat Simple_repeat 2 40 0 1 1520 702 134 117 39 chr3 122577730 122577909 -37021874 + RMER5 LTR ERV1 331 523 -11 1 1520 295 260 177 0 chr3 122578325 122578421 -37021362 - RSINE1 SINE B4 -41 124 12 1 1520 204 125 0 0 chr3 122578499 122578531 -37021252 + (CACCAT)n Simple_repeat Simple_repeat 5 36 0 1 1520 192 302 144 29 chr3 122579872 122580046 -37019737 - MIRb SINE MIR -61 207 14 1 1520 566 228 23 23 chr3 122580233 122580363 -37019420 + RSINE1 SINE B4 3 132 -33 1 1520 333 0 0 0 chr3 122580371 122580408 -37019375 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 1520 342 98 0 0 chr3 122580866 122580917 -37018866 + (CA)n Simple_repeat Simple_repeat 1 51 0 1 1520 21 82 0 0 chr3 122580959 122581008 -37018775 + AT_rich Low_complexity Low_complexity 1 49 0 1 1520 399 235 84 39 chr3 122581446 122581601 -37018182 - RSINE1 SINE B4 -2 163 2 1 1520 1112 83 0 0 chr3 122582277 122582421 -37017362 - B1_Mus1 SINE Alu 0 148 5 1 1520 305 230 0 39 chr3 122583293 122583370 -37016413 - URR1A DNA MER1_type -90 136 63 1 1520 472 227 27 9 chr3 122583399 122583510 -37016273 - MTD LTR MaLR -306 113 1 1 1520 318 324 29 0 chr3 122583510 122583611 -37016172 - MLT1A0 LTR MaLR -261 104 1 1 1520 262 370 17 0 chr3 122584557 122584676 -37015107 + ERVL-B4-int LTR ERVL 2290 2410 -3304 1 1520 215 224 41 0 chr3 122584918 122584967 -37014816 - B3A SINE B2 -66 132 82 1 1520 1511 274 30 81 chr3 122585248 122585454 -37014329 - Lx7 LINE L1 -1309 6387 6187 1 1520 3283 50 0 8 chr3 122585454 122585853 -37013930 - MTA_Mm LTR MaLR 0 396 1 1 1520 1511 274 30 81 chr3 122585853 122586325 -37013458 - Lx7 LINE L1 -1510 6186 5744 1 1520 261 194 43 238 chr3 122586347 122586557 -37013226 - RMER10A LTR ERVL -14 428 260 1 1520 351 65 0 0 chr3 122586557 122586603 -37013180 + (GA)n Simple_repeat Simple_repeat 2 47 0 1 1520 376 200 58 69 chr3 122586778 122586962 -37012821 - RMER10A LTR ERVL -218 180 1 1 1520 261 0 0 0 chr3 122588739 122588768 -37011015 + (TG)n Simple_repeat Simple_repeat 2 30 0 1 1520 796 138 70 28 chr3 122588768 122588900 -37010883 - B1_Mus1 SINE Alu -8 140 1 1 1520 260 328 79 97 chr3 122588965 122589255 -37010528 + B4 SINE B4 8 292 0 1 1520 383 165 0 25 chr3 122589846 122589927 -37009856 + (TATATG)n Simple_repeat Simple_repeat 4 82 0 1 1520 421 250 16 39 chr3 122589940 122590150 -37009633 + B4A SINE B4 1 241 -51 1 1520 1127 58 7 0 chr3 122590151 122590289 -37009494 + B1_Mus1 SINE Alu 1 139 -9 1 1520 267 38 37 37 chr3 122590289 122590343 -37009440 + (CAAA)n Simple_repeat Simple_repeat 2 55 0 1 1520 299 208 41 14 chr3 122590523 122590596 -37009187 - B1F1 SINE Alu -2 147 73 1 1520 218 220 0 39 chr3 122591948 122592052 -37007731 + (TA)n Simple_repeat Simple_repeat 2 101 0 1 1520 183 156 0 0 chr3 122593478 122593510 -37006273 + (CATATA)n Simple_repeat Simple_repeat 2 33 0 1 1520 275 71 24 0 chr3 122593970 122594012 -37005771 + (TAAAA)n Simple_repeat Simple_repeat 3 45 0 1 1520 223 325 67 31 chr3 122594095 122594336 -37005447 - MIRc SINE MIR -6 256 23 1 1520 369 0 0 0 chr3 122594421 122594462 -37005321 + (TAGA)n Simple_repeat Simple_repeat 1 41 0 1 1520 380 261 109 2 chr3 122594495 122594627 -37005156 - B3 SINE B2 -30 165 27 1 1520 804 197 14 0 chr3 122594657 122594799 -37004984 - B1_Mur1 SINE Alu -5 144 1 1 1520 452 234 254 14 chr3 122594857 122595074 -37004709 - Lx8 LINE L1 -2 7471 7203 1 1520 475 259 29 64 chr3 122595160 122595333 -37004450 + RMER30 DNA MER1_type 10 176 -26 1 1520 432 0 0 0 chr3 122596234 122596282 -37003501 + (CA)n Simple_repeat Simple_repeat 2 49 0 1 1520 1147 238 90 68 chr3 122596415 122596619 -37003164 - RMER4A LTR ERVK 0 466 253 1 1520 1013 100 6 17 chr3 122596619 122596792 -37002991 + (TTC)n Simple_repeat Simple_repeat 1 171 0 1 1520 1147 238 90 68 chr3 122596792 122597043 -37002740 - RMER4A LTR ERVK -214 252 1 1 1520 312 301 140 47 chr3 122597356 122597635 -37002148 + L1MB8 LINE L1 5799 6103 -75 1 1520 299 229 146 0 chr3 122597958 122598054 -37001729 - B1_Mus1 SINE Alu -37 111 2 1 1520 3339 60 18 5 chr3 122599851 122600286 -36999497 - Lx3_Mus LINE L1 0 7009 6569 1 1520 605 284 84 5 chr3 122600655 122600857 -36998926 + ID_B1 SINE B4 3 220 -4 1 1520 672 251 138 17 chr3 122601073 122601312 -36998471 - B4A SINE B4 -22 270 3 1 1520 453 221 0 0 chr3 122601798 122601902 -36997881 + (TA)n Simple_repeat Simple_repeat 2 105 0 1 1520 14677 77 12 65 chr3 122602693 122605829 -36993954 - Lx3A LINE L1 -1 6980 3900 1 1520 222 37 0 0 chr3 122605829 122605856 -36993927 + (TTTTC)n Simple_repeat Simple_repeat 4 30 0 1 1520 543 65 187 0 chr3 122605861 122605984 -36993799 - RMER17B LTR ERVK -498 460 315 1 1520 14677 73 5 81 chr3 122605984 122606099 -36993684 - Lx3A LINE L1 -1987 3894 3787 1 1520 234 274 47 23 chr3 122606174 122606260 -36993523 + MIR3 SINE MIR 91 178 -30 1 1520 775 287 38 28 chr3 122606624 122606911 -36992872 - B4A SINE B4 -2 290 1 1 1520 1072 89 8 13 chr3 122607914 122608310 -36991473 + (CA)n Simple_repeat Simple_repeat 1 394 0 1 1520 275 227 0 15 chr3 122608605 122608672 -36991111 - Lx7 LINE L1 -17 7679 7614 1 1520 388 111 50 0 chr3 122608822 122608921 -36990862 + (CA)n Simple_repeat Simple_repeat 2 105 0 1 1520 944 263 68 4 chr3 122608923 122609175 -36990608 - Lx7 LINE L1 -389 7307 7040 1 1520 203 109 0 61 chr3 122609175 122609224 -36990559 + T-rich Low_complexity Low_complexity 1 46 0 1 1520 738 220 0 13 chr3 122609376 122609528 -36990255 + B1_Mur4 SINE Alu 1 150 0 1 1520 462 320 77 39 chr3 122609546 122609728 -36990055 - Lx8 LINE L1 -148 7325 7137 1 1520 342 0 0 0 chr3 122609774 122609812 -36989971 + (AAATG)n Simple_repeat Simple_repeat 4 41 0 1 1520 351 357 51 43 chr3 122610192 122610426 -36989357 + Lx7 LINE L1 6878 7113 -583 1 1520 832 165 197 52 chr3 122610437 122610706 -36989077 + MTD LTR MaLR 111 418 -1 1 1520 5609 82 33 19 chr3 122611453 122611513 -36988270 + Lx LINE L1 543 602 -6055 1 1520 3245 39 15 3 chr3 122611513 122611904 -36987879 - MTA_Mm LTR MaLR 0 396 1 1 1520 25048 130 21 10 chr3 122611904 122614445 -36985338 + Lx LINE L1 603 3159 -2727 1 1520 252 0 0 0 chr3 122614445 122614473 -36985310 + (TA)n Simple_repeat Simple_repeat 2 29 0 1 1520 25048 141 21 6 chr3 122614473 122617903 -36981880 + Lx LINE L1 3160 6653 -1 1 1520 424 250 10 39 chr3 122617915 122618019 -36981764 - B1F SINE Alu -48 101 1 1 1520 395 330 47 9 chr3 122618551 122618658 -36981125 + RSINE1 SINE B4 45 155 -10 1 1520 450 65 0 0 chr3 122618672 122618734 -36981049 + (CA)n Simple_repeat Simple_repeat 2 63 0 1 1520 701 247 178 28 chr3 122618810 122619197 -36980586 - L1MB2 LINE L1 -48 6123 5679 1 1520 326 264 106 23 chr3 122619200 122619332 -36980451 - L1M4 LINE L1 -2455 3691 3549 1 1520 245 402 19 0 chr3 122619336 122619443 -36980340 + ID_B1 SINE B4 3 111 -113 1 1520 274 125 23 70 chr3 122619824 122619910 -36979873 + A-rich Low_complexity Low_complexity 5 86 0 1 1520 1305 67 56 0 chr3 122620563 122620741 -36979042 - B2_Mm2 SINE B2 -7 188 1 1 1520 302 372 7 27 chr3 122621434 122621583 -36978200 + RSINE1 SINE B4 3 148 -17 1 1520 230 225 24 0 chr3 122621965 122622025 -36977758 + PB1 SINE Alu 56 120 -7 1 1520 1108 95 0 13 chr3 122622027 122622177 -36977606 + B1_Mus1 SINE Alu 1 148 0 2 1520 243 242 31 10 chr3 122622177 122622273 -36977510 + A-rich Low_complexity Low_complexity 1 98 0 2 1520 700 203 58 0 chr3 122622879 122623017 -36976766 + ORR1C2 LTR MaLR 1 146 -232 2 1520 2411 225 29 49 chr3 122623019 122623607 -36976176 + RLTR18 LTR ERVK 32 607 -9 2 1520 749 237 50 50 chr3 122623618 122623836 -36975947 + ORR1C2 LTR MaLR 167 384 0 2 1520 569 275 35 14 chr3 122624073 122624217 -36975566 - RSINE1 SINE B4 -11 154 8 2 1520 1399 224 121 62 chr3 122624754 122625225 -36974558 + RLTR19 LTR ERVK 1 499 0 2 1520 1652 192 72 22 chr3 122625481 122625843 -36973940 - RMER5 LTR ERV1 0 534 155 2 1520 1119 177 97 172 chr3 122625929 122626394 -36973389 + RLTR23 LTR ERV1 1 430 0 2 1520 310 268 0 0 chr3 122626546 122626617 -36973166 + RMER30 DNA MER1_type 11 81 -121 2 1520 972 106 6 12 chr3 122626623 122626786 -36972997 + (GGAA)n Simple_repeat Simple_repeat 3 164 0 2 1520 210 24 22 67 chr3 122627230 122627275 -36972508 + (CGGGGG)n Simple_repeat Simple_repeat 5 47 0 2 1520 33 56 0 0 chr3 122627816 122627870 -36971913 + AT_rich Low_complexity Low_complexity 1 54 0 2 1520 21 0 0 0 chr3 122628595 122628616 -36971167 + AT_rich Low_complexity Low_complexity 1 21 0 2 1520 288 314 0 0 chr3 122628729 122628799 -36970984 + LTR82A LTR ERVL 123 192 -680 2 1520 228 315 207 12 chr3 122628799 122628893 -36970890 + LTR82B Low_complexity ERVL 135 330 -500 2 1520 278 312 167 37 chr3 122628949 122629165 -36970618 + LTR82A LTR ERVL 537 780 -92 2 1520 409 227 139 32 chr3 122629253 122629440 -36970343 + MLT2B2 LTR ERVL 1 207 -308 2 1520 349 118 14 29 chr3 122629919 122629989 -36969794 + (TAGA)n Simple_repeat Simple_repeat 1 69 0 2 1520 646 134 92 8 chr3 122630482 122630602 -36969181 - B1_Mur2 SINE Alu 0 149 20 2 1520 5355 57 8 47 chr3 122630717 122631112 -36968671 + L1Md_F2 LINE L1 4828 5200 -683 2 1520 1574 27 27 0 chr3 122631112 122631299 -36968484 - B2_Mm1t SINE B2 0 193 2 2 1520 5355 57 8 47 chr3 122631299 122631692 -36968091 + L1Md_F2 LINE L1 5201 5585 -298 2 1520 7839 53 13 3 chr3 122631693 122632671 -36967112 + L1Md_F2 LINE L1 5587 6574 -8 2 1520 25 65 0 0 chr3 122635125 122635171 -36964612 + AT_rich Low_complexity Low_complexity 1 46 0 2 1520 22 35 0 0 chr3 122635678 122635707 -36964076 + AT_rich Low_complexity Low_complexity 1 29 0 2 1520 23 0 0 0 chr3 122635983 122636006 -36963777 + AT_rich Low_complexity Low_complexity 1 23 0 2 1520 21 0 0 0 chr3 122637517 122637538 -36962245 + AT_rich Low_complexity Low_complexity 1 21 0 2 1520 249 300 14 0 chr3 122637768 122637838 -36961945 - ID4_ SINE ID -12 71 1 2 1520 423 262 24 16 chr3 122638528 122638652 -36961131 + Tigger7 DNA MER2_type 490 614 -1877 2 1520 239 273 82 104 chr3 122639189 122639324 -36960459 + MIRc SINE MIR 89 223 -45 2 1520 4569 144 45 28 chr3 122639412 122640298 -36959485 + RLTR13D6 LTR ERVK 1 856 -46 2 1520 220 260 49 49 chr3 122640365 122640446 -36959337 - BC1_Mm scRNA scRNA -67 85 5 2 1520 1206 62 0 6 chr3 122640681 122640843 -36958940 + RMER19A LTR ERVK 575 735 -2 2 1520 342 322 124 52 chr3 122640843 122641315 -36958468 + Charlie1a DNA MER1_type 926 1433 -22 2 1520 207 0 0 0 chr3 122641608 122641631 -36958152 + (TCTG)n Simple_repeat Simple_repeat 2 24 0 2 1520 21 82 0 0 chr3 122642826 122642875 -36956908 + AT_rich Low_complexity Low_complexity 1 49 0 2 1520 21 0 0 0 chr3 122643027 122643048 -36956735 + AT_rich Low_complexity Low_complexity 1 21 0 2 1520 373 206 21 0 chr3 122644273 122644370 -36955413 + GA-rich Low_complexity Low_complexity 3 101 0 2 1520 394 265 8 26 chr3 122644372 122644587 -36955196 + L1MB3 LINE L1 5602 5807 -361 2 1520 1538 190 35 51 chr3 122644566 122644960 -36954823 + Lx9 LINE L1 7256 7643 -1 2 1520 268 258 206 72 chr3 122644937 122645213 -36954570 + L1MB3 LINE L1 5799 6111 -72 2 1520 626 282 174 5 chr3 122646327 122646534 -36953249 + MTEa LTR MaLR 36 277 -102 2 1520 278 274 11 106 chr3 122646740 122646834 -36952949 + RLTR33 LTR ERVK 445 529 -149 2 1520 239 221 208 0 chr3 122647010 122647087 -36952696 + MTEa LTR MaLR 286 378 -1 2 1520 1566 277 92 76 chr3 122647611 122649425 -36950358 + L1_Mur3 LINE L1 1218 3051 -2796 2 1520 223 265 55 68 chr3 122649727 122649800 -36949983 - B1F SINE Alu -67 82 11 2 1520 1844 149 99 0 chr3 122649847 122650170 -36949613 + MTC LTR MaLR 1 355 -66 2 1520 212 261 123 0 chr3 122650497 122650562 -36949221 - B1_Mus1 SINE Alu -58 90 18 2 1520 836 191 76 15 chr3 122651241 122651438 -36948345 + B3 SINE B2 2 210 -6 2 1520 427 196 211 81 chr3 122651838 122651999 -36947784 + B3A SINE B2 1 182 -16 2 1520 490 255 0 68 chr3 122652870 122652988 -36946795 + PB1D10 SINE Alu 1 110 -7 2 1520 712 215 296 34 chr3 122653592 122653886 -36945897 + ORR1D1 LTR MaLR 1 371 -3 2 1520 2702 98 3 3 chr3 122654332 122654722 -36945061 + L1Md_F2 LINE L1 6192 6581 -1 2 1520 531 280 34 0 chr3 122654727 122654845 -36944938 + RSINE1 SINE B4 3 124 -41 2 1520 213 39 0 0 chr3 122654846 122654872 -36944911 + (CA)n Simple_repeat Simple_repeat 1 26 0 2 1520 582 60 0 0 chr3 122654872 122654954 -36944829 + (GA)n Simple_repeat Simple_repeat 2 84 0 2 1520 538 260 69 57 chr3 122656462 122656621 -36943162 + RSINE1 SINE B4 3 163 -2 2 1520 322 318 90 53 chr3 122656621 122656651 -36943132 + B3A SINE B2 2 197 -1 2 1520 214 318 143 0 chr3 122656722 122656785 -36942998 - B1F SINE Alu -75 74 3 2 1520 285 210 22 55 chr3 122656802 122656928 -36942855 + L1ME1 LINE L1 4826 4948 -1198 2 1520 759 206 7 0 chr3 122657098 122657239 -36942544 + B1_Mur1 SINE Alu 1 142 -7 2 1520 407 233 129 19 chr3 122657257 122657384 -36942399 + L1ME1 LINE L1 5236 5363 -801 2 1520 522 93 0 0 chr3 122657384 122657470 -36942313 + (CA)n Simple_repeat Simple_repeat 1 86 0 2 1520 484 276 214 29 chr3 122657470 122658063 -36941720 + L1ME1 LINE L1 5364 6057 -122 2 1520 252 0 0 0 chr3 122658476 122658504 -36941279 + (T)n Simple_repeat Simple_repeat 1 28 0 2 1520 405 323 54 16 chr3 122658616 122658931 -36940852 - L1ME1 LINE L1 -182 5997 5671 2 1520 1374 51 0 0 chr3 122658961 122659136 -36940647 + (CA)n Simple_repeat Simple_repeat 2 176 0 2 1520 415 348 7 0 chr3 122659192 122659333 -36940450 + B1F SINE Alu 1 142 -7 2 1520 404 172 115 0 chr3 122661141 122661228 -36938555 + B1_Mur4 SINE Alu 49 145 -5 2 1520 298 269 55 55 chr3 122661228 122661241 -36938542 + B4 SINE B4 133 232 -60 2 1520 836 226 24 11 chr3 122661241 122661423 -36938360 + B3 SINE B2 2 179 -16 2 1520 1271 27 0 0 chr3 122661423 122661569 -36938214 + B1_Mm SINE Alu 2 147 0 2 1520 563 256 50 71 chr3 122661569 122661584 -36938199 + B2_Mm2 SINE B2 180 194 -1 2 1520 390 294 37 0 chr3 122661647 122661756 -36938027 - PB1 SINE Alu 0 127 15 2 1520 462 174 0 73 chr3 122662273 122662465 -36937318 - RMER17C LTR ERVK -136 274 97 2 1520 250 308 37 37 chr3 122662500 122662608 -36937175 - PB1D10 SINE Alu -9 108 1 2 1520 228 35 0 0 chr3 122664365 122664394 -36935389 + (A)n Simple_repeat Simple_repeat 1 29 0 2 1520 1263 86 40 0 chr3 122664748 122664922 -36934861 - B2_Mm2 SINE B2 -14 181 1 2 1520 437 265 33 41 chr3 122664983 122665105 -36934678 - B4 SINE B4 0 292 172 2 1520 622 354 23 10 chr3 122665220 122665528 -36934255 + Lx8 LINE L1 7041 7352 -121 2 1520 23 78 0 0 chr3 122665537 122665588 -36934195 + AT_rich Low_complexity Low_complexity 1 51 0 2 1520 486 293 85 42 chr3 122666091 122666351 -36933432 + B4A SINE B4 2 272 -20 2 1520 184 333 48 0 chr3 122666451 122666535 -36933248 + L2a LINE L2 2924 3011 -364 2 1520 224 385 143 14 chr3 122666571 122666787 -36932996 + L2a LINE L2 3107 3350 -76 2 1520 212 163 0 0 chr3 122667481 122667524 -36932259 + A-rich Low_complexity Low_complexity 1 43 0 2 1520 241 299 30 0 chr3 122668268 122668335 -36931448 + MIR SINE MIR 6 74 -188 2 1520 215 349 24 0 chr3 122668388 122668471 -36931312 + MIR SINE MIR 174 258 -4 2 1520 436 291 137 38 chr3 122668694 122668987 -36930796 + L1MEc LINE L1 532 853 -5547 2 1520 609 190 34 17 chr3 122669176 122669294 -36930489 - B1_Mus2 SINE Alu -23 124 5 2 1520 205 200 0 0 chr3 122669380 122669420 -36930363 + A-rich Low_complexity Low_complexity 1 40 0 2 1520 358 258 33 22 chr3 122669661 122669752 -36930031 - ID_B1 SINE B4 -54 170 79 2 1520 389 274 43 0 chr3 122669760 122669877 -36929906 + L1MEc LINE L1 1683 1804 -4596 2 1520 423 193 25 42 chr3 122670701 122670820 -36928963 - Lx4B LINE L1 -1 7057 6941 2 1520 21 82 0 0 chr3 122670913 122670962 -36928821 + AT_rich Low_complexity Low_complexity 1 49 0 2 1520 22 35 0 0 chr3 122671014 122671043 -36928740 + AT_rich Low_complexity Low_complexity 1 29 0 2 1520 600 254 128 28 chr3 122671101 122671352 -36928431 + B4A SINE B4 5 280 -12 2 1520 262 356 122 5 chr3 122672820 122673009 -36926774 - L2a LINE L2 -269 3157 2947 2 1520 23 0 0 0 chr3 122673307 122673330 -36926453 + AT_rich Low_complexity Low_complexity 1 23 0 2 1520 903 200 23 6 chr3 122673484 122673639 -36926144 + ORR1D1 LTR MaLR 1 158 -216 2 1520 567 169 22 29 chr3 122673639 122673786 -36925997 + RLTR31A_Mm LTR ERVK 1 156 -405 2 1520 262 115 0 203 chr3 122673790 122673987 -36925796 + GA-rich Low_complexity Low_complexity 6 162 0 2 1520 1104 207 88 26 chr3 122674004 122674451 -36925332 + RLTR31B_Mm LTR ERVK 40 541 -43 2 1520 643 169 47 23 chr3 122674454 122674623 -36925160 + ORR1D1 LTR MaLR 206 374 0 2 1520 24 0 0 0 chr3 122674635 122674659 -36925124 + AT_rich Low_complexity Low_complexity 1 24 0 2 1520 652 285 74 63 chr3 122674696 122674966 -36924817 - B4 SINE B4 -18 274 2 2 1520 476 180 0 92 chr3 122675190 122675288 -36924495 + URR1B DNA MER1_type 1 89 -136 2 1520 547 205 98 0 chr3 122675644 122675756 -36924027 + B3 SINE B2 7 129 -87 2 1520 361 336 134 0 chr3 122676022 122676156 -36923627 + RSINE1 SINE B4 4 155 -10 2 1520 194 150 0 24 chr3 122676182 122676223 -36923560 + (TAAA)n Simple_repeat Simple_repeat 4 43 0 2 1520 1203 292 90 24 chr3 122676379 122676878 -36922905 + Lx8 LINE L1 6805 7336 -137 2 1520 24 0 0 0 chr3 122677374 122677398 -36922385 + AT_rich Low_complexity Low_complexity 1 24 0 2 1520 663 173 21 35 chr3 122677810 122677954 -36921829 + L1MB7 LINE L1 5703 5844 -340 2 1520 373 268 59 43 chr3 122678022 122678209 -36921574 + L1MB7 LINE L1 5978 6167 -11 2 1520 665 301 60 40 chr3 122678317 122678566 -36921217 + MER68 LTR ERVL 161 414 -149 3 1520 682 352 50 31 chr3 122678934 122679294 -36920489 + MER54A LTR ERVL 57 423 -478 3 1520 1062 296 117 25 chr3 122679305 122679700 -36920083 + MER54A LTR ERVL 461 891 -10 3 1520 258 247 53 27 chr3 122681288 122681363 -36918420 + MLT1E1 LTR MaLR 145 221 -406 3 1520 525 348 67 53 chr3 122681400 122681682 -36918101 + MLT1E1 LTR MaLR 368 653 -1 3 1520 243 237 216 0 chr3 122681702 122681799 -36917984 - L1ME1 LINE L1 -212 5967 5850 3 1520 347 270 158 42 chr3 122681866 122682003 -36917780 - L1ME1 LINE L1 -441 5738 5592 3 1520 180 0 0 0 chr3 122682003 122682023 -36917760 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 3 1520 347 270 158 42 chr3 122682023 122682221 -36917562 - L1ME1 LINE L1 -588 5591 5364 3 1520 1211 61 196 0 chr3 122682248 122682411 -36917372 + B2_Mm2 SINE B2 1 195 0 3 1520 789 292 156 0 chr3 122682575 122682832 -36916951 - MLT1A0 LTR MaLR -68 297 1 3 1520 277 293 115 60 chr3 122682848 122683178 -36916605 + L2a LINE L2 2931 3298 -128 3 1520 276 125 0 59 chr3 122683294 122683345 -36916438 + RMER30 DNA MER1_type 9 56 -146 3 1521 370 306 21 63 chr3 122683796 122683939 -36915844 + B1F SINE Alu 5 141 -8 3 1521 829 251 80 0 chr3 122684100 122684299 -36915484 + B3 SINE B2 1 215 -1 3 1521 342 0 0 0 chr3 122684522 122684560 -36915223 + (CA)n Simple_repeat Simple_repeat 2 39 0 3 1521 375 262 128 0 chr3 122684787 122684881 -36914902 + PB1D10 SINE Alu 17 122 -27 3 1521 1305 48 0 0 chr3 122685054 122685201 -36914582 + B1_Mus2 SINE Alu 1 147 0 3 1521 183 42 0 0 chr3 122685201 122685225 -36914558 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 3 1521 21 0 0 0 chr3 122686099 122686120 -36913663 + AT_rich Low_complexity Low_complexity 1 21 0 3 1521 198 103 0 0 chr3 122687470 122687499 -36912284 + (CCCCG)n Simple_repeat Simple_repeat 1 29 0 3 1521 678 222 18 67 chr3 122690073 122690237 -36909546 - RSINE1 SINE B4 -6 159 4 3 1521 213 329 24 12 chr3 122690326 122690409 -36909374 + L2 LINE L2 2822 2905 -514 3 1521 267 233 67 27 chr3 122690602 122690677 -36909106 + MER20 DNA MER1_type 113 190 -29 3 1521 207 0 0 0 chr3 122690744 122690767 -36909016 + (T)n Simple_repeat Simple_repeat 1 23 0 3 1521 375 23 0 0 chr3 122692286 122692330 -36907453 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 3 1521 1121 59 0 42 chr3 122692330 122692472 -36907311 - B1_Mm SINE Alu -11 136 1 3 1521 279 272 64 21 chr3 122692909 122693003 -36906780 + MIRb SINE MIR 46 143 -125 3 1521 430 225 188 9 chr3 122693733 122693845 -36905938 + B3 SINE B2 1 132 -84 3 1521 738 245 12 19 chr3 122693846 122694008 -36905775 + B3 SINE B2 37 197 -19 3 1521 3938 249 42 54 chr3 122694053 122695238 -36904545 + Lx9 LINE L1 6459 7629 -15 3 1521 4909 116 3 4 chr3 122695261 122695977 -36903806 - L1_Mur2 LINE L1 -919 4958 4244 3 1521 565 172 221 0 chr3 122696413 122696535 -36903248 - B1_Mur2 SINE Alu 0 149 1 3 1521 248 326 10 31 chr3 122697179 122697277 -36902506 - MLT1A1 LTR MaLR 0 408 313 3 1521 2085 107 6 59 chr3 122697463 122697802 -36901981 - ORR1A4 LTR MaLR -8 321 1 3 1521 207 0 0 0 chr3 122698321 122698344 -36901439 + (T)n Simple_repeat Simple_repeat 1 23 0 3 1521 1264 61 0 0 chr3 122698344 122698492 -36901291 - B1_Mus1 SINE Alu 0 148 1 3 1521 268 194 0 127 chr3 122698613 122698659 -36901124 - MTE2b LTR MaLR -2 377 341 3 1521 2185 226 239 104 chr3 122698659 122700030 -36899753 + RLTR22_Mus LTR ERVK 1 1556 -252 3 1521 1033 158 12 0 chr3 122700106 122700271 -36899512 - Lx4A LINE L1 -336 6722 6556 3 1521 2337 108 62 16 chr3 122700271 122700640 -36899143 + Lx4A LINE L1 6673 7058 0 3 1521 1245 257 29 29 chr3 122700658 122700974 -36898809 - MTE2b LTR MaLR -46 333 18 3 1521 304 265 15 0 chr3 122701204 122701272 -36898511 + ORR1D2 LTR MaLR 1 69 -290 3 1521 1163 259 94 12 chr3 122701278 122701618 -36898165 + MTE2b LTR MaLR 1 368 -11 3 1521 321 336 60 83 chr3 122701631 122701933 -36897850 + ORR1D2 LTR MaLR 68 362 -8 3 1521 192 125 0 0 chr3 122701937 122701969 -36897814 + (CAA)n Simple_repeat Simple_repeat 2 33 0 3 1521 1238 74 0 0 chr3 122702229 122702377 -36897406 + B1_Mus1 SINE Alu 1 148 0 3 1521 235 344 10 31 chr3 122702671 122702767 -36897016 + LTR16B LTR ERVL 370 463 0 3 1521 350 231 15 0 chr3 122703303 122703368 -36896415 + RSINE1 SINE B4 53 118 -47 3 1521 603 202 43 9 chr3 122703549 122703664 -36896119 - ID_B1 SINE B4 -18 206 88 3 1521 2112 279 89 12 chr3 122704452 122705338 -36894445 + Lx7 LINE L1 5502 6461 -1235 3 1521 685 276 26 35 chr3 122705338 122705567 -36894216 + Lx7 LINE L1 7091 7317 -156 3 1521 606 184 0 0 chr3 122705586 122705765 -36894018 + GA-rich Low_complexity Low_complexity 1 179 0 3 1521 224 148 16 0 chr3 122705774 122705835 -36893948 + (CAGAGA)n Simple_repeat Simple_repeat 3 64 0 3 1521 34 42 0 0 chr3 122707546 122707594 -36892189 + AT_rich Low_complexity Low_complexity 1 48 0 3 1521 576 118 21 21 chr3 122707683 122707778 -36892005 + B1_Mur4 SINE Alu 5 99 -51 3 1521 916 162 203 23 chr3 122708212 122708389 -36891394 - B3 SINE B2 -6 210 2 3 1521 925 71 2 15 chr3 122708479 122708613 -36891170 - B1_Mm SINE Alu 0 147 16 3 1521 508 183 0 25 chr3 122710057 122710175 -36889608 + Lx9 LINE L1 7529 7643 -1 3 1521 294 29 0 0 chr3 122710457 122710492 -36889291 + (CACG)n Simple_repeat Simple_repeat 1 35 0 3 1521 722 117 8 0 chr3 122710944 122711064 -36888719 + (GA)n Simple_repeat Simple_repeat 2 122 0 3 1521 6806 128 33 16 chr3 122711086 122712153 -36887630 + Lx2B LINE L1 5915 6999 -1 3 1521 518 108 12 0 chr3 122713427 122713510 -36886273 + (TC)n Simple_repeat Simple_repeat 1 84 0 3 1521 259 288 22 43 chr3 122713867 122714005 -36885778 - L1M5 LINE L1 -1825 4321 4187 3 1521 868 144 25 0 chr3 122714762 122714922 -36884861 + Lx LINE L1 6491 6654 0 3 1521 281 299 122 39 chr3 122714931 122715161 -36884622 + L1MB3 LINE L1 5892 6140 -43 3 1521 932 218 44 19 chr3 122715165 122715371 -36884412 + B3 SINE B2 1 211 -5 3 1521 661 132 110 28 chr3 122715415 122715524 -36884259 - PB1D9 SINE Alu -1 119 2 3 1521 570 241 14 41 chr3 122716062 122716209 -36883574 + RSINE1 SINE B4 5 147 -18 3 1521 193 75 24 24 chr3 122716894 122716935 -36882848 + (TTA)n Simple_repeat Simple_repeat 2 42 0 3 1521 7574 71 1 15 chr3 122717006 122717990 -36881793 - L1Md_F2 LINE L1 -7 6575 5606 3 1521 521 276 46 23 chr3 122717991 122718121 -36881662 + ETnERV2-int LTR ERVK 7070 7202 -204 3 1521 4843 55 3 0 chr3 122718492 122719088 -36880695 - L1_Mm LINE L1 -272 5611 5014 3 1521 255 306 0 0 chr3 122719184 122719256 -36880527 + RSINE1 SINE B4 91 162 -3 3 1521 186 103 0 0 chr3 122719765 122719794 -36879989 + (CAG)n Simple_repeat Simple_repeat 1 29 0 3 1521 192 150 50 0 chr3 122719801 122719841 -36879942 - L2a LINE L2 -11 3415 3374 3 1521 2460 311 82 24 chr3 122719992 122720966 -36878817 - Lx8 LINE L1 -6 7467 6436 3 1521 3329 26 0 43 chr3 122720966 122721361 -36878422 - L1Md_F2 LINE L1 -4 6578 6201 3 1521 2460 311 82 24 chr3 122721361 122721483 -36878300 - Lx8 LINE L1 -1038 6435 6307 3 1521 2045 228 44 49 chr3 122721763 122721990 -36877793 - Lx8 LINE L1 -160 5687 5462 3 1521 2218 134 22 17 chr3 122721990 122722347 -36877436 + RLTR15 LTR ERVK 1 359 0 3 1521 2022 228 44 49 chr3 122722347 122722692 -36877091 - Lx8 LINE L1 -386 5461 5118 3 1521 458 213 36 27 chr3 122722693 122722804 -36876979 + L1_Rod LINE L1 5707 5818 -29 3 1521 1187 71 81 12 chr3 122723172 122723344 -36876439 + B2_Mm2 SINE B2 2 185 -10 3 1521 881 178 10 56 chr3 122723353 122723549 -36876234 - B3A SINE B2 0 198 12 3 1521 709 216 67 0 chr3 122724111 122724245 -36875538 + B1_Mur2 SINE Alu 1 143 -6 3 1521 709 194 91 10 chr3 122725156 122725364 -36874419 - Lx9 LINE L1 -1 7643 7419 3 1521 392 132 0 0 chr3 122725339 122725415 -36874368 - Lx9 LINE L1 -127 7517 7442 3 1521 1066 57 69 19 chr3 122725415 122725575 -36874208 - B2_Mm2 SINE B2 -9 186 19 3 1521 521 135 22 0 chr3 122725575 122725664 -36874119 - Lx9 LINE L1 -189 7455 7365 3 1521 213 245 0 0 chr3 122725812 122725861 -36873922 + T-rich Low_complexity Low_complexity 1 49 0 3 1521 1113 75 0 33 chr3 122725906 122726057 -36873726 + B1_Mm SINE Alu 2 147 0 3 1521 242 29 29 0 chr3 122726321 122726356 -36873427 + (CAAAA)n Simple_repeat Simple_repeat 1 36 0 3 1521 198 325 91 0 chr3 122726866 122726943 -36872840 - L2a LINE L2 0 3426 3343 3 1521 1359 159 9 5 chr3 122727231 122727452 -36872331 + URR1B DNA MER1_type 3 224 -1 3 1521 751 201 15 0 chr3 122727977 122728111 -36871672 + B1_Mur1 SINE Alu 1 136 -13 3 1521 668 219 14 14 chr3 122728290 122728438 -36871345 - B1F2 SINE Alu -1 148 1 3 1521 287 121 17 0 chr3 122729846 122729904 -36869879 + (TCTA)n Simple_repeat Simple_repeat 4 62 0 3 1521 371 282 41 27 chr3 122729983 122730129 -36869654 + B1F SINE Alu 1 148 -1 3 1521 234 367 0 11 chr3 122730249 122730340 -36869443 - PB1D7 SINE Alu -26 94 5 3 1521 317 293 131 0 chr3 122731368 122731467 -36868316 + ID_B1 SINE B4 85 196 -28 3 1521 240 35 0 0 chr3 122731517 122731546 -36868237 + (CA)n Simple_repeat Simple_repeat 1 29 0 3 1521 261 232 61 31 chr3 122731613 122731711 -36868072 + PB1D10 SINE Alu 20 120 0 3 1521 775 186 7 14 chr3 122732837 122732979 -36866804 - B1_Mur1 SINE Alu 0 149 9 3 1521 472 259 32 97 chr3 122732846 122733000 -36866783 - B4 SINE B4 -73 219 76 3 1521 737 76 9 0 chr3 122734443 122734548 -36865235 + (TCTCCC)n Simple_repeat Simple_repeat 3 108 0 3 1521 423 0 0 0 chr3 122734549 122734596 -36865187 + (TG)n Simple_repeat Simple_repeat 2 48 0 3 1521 358 239 0 0 chr3 122734598 122734669 -36865114 - RSINE1 SINE B4 -54 111 41 3 1521 180 0 0 0 chr3 122735932 122735952 -36863831 + (A)n Simple_repeat Simple_repeat 1 20 0 3 1521 35 24 0 0 chr3 122736473 122736515 -36863268 + AT_rich Low_complexity Low_complexity 1 42 0 3 1521 766 189 19 25 chr3 122738226 122738383 -36861400 + B3A SINE B2 1 156 -42 3 1521 351 0 0 0 chr3 122738386 122738425 -36861358 + (CA)n Simple_repeat Simple_repeat 2 40 0 3 1521 236 402 26 0 chr3 122739290 122739407 -36860376 - MLT1J LTR MaLR -274 238 119 3 1521 252 0 0 0 chr3 122739490 122739518 -36860265 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 4 1521 338 209 12 0 chr3 122739664 122739750 -36860033 + ID_B1 SINE B4 135 221 -3 4 1521 373 257 0 0 chr3 122739901 122739975 -36859808 + ID4 SINE ID 4 77 -6 4 1521 219 152 0 0 chr3 122740002 122740048 -36859735 + (ACATG)n Simple_repeat Simple_repeat 3 48 0 4 1521 1070 49 0 123 chr3 122742491 122742654 -36857129 + B1_Mm SINE Alu 2 144 -3 4 1521 477 0 0 0 chr3 122743292 122743345 -36856438 + (TAA)n Simple_repeat Simple_repeat 2 54 0 4 1521 353 311 19 10 chr3 122743566 122743670 -36856113 + PB1D10 SINE Alu 1 105 -12 4 1521 377 335 29 53 chr3 122743709 122743879 -36855904 + B4A SINE B4 10 175 -117 4 1521 6426 91 28 1 chr3 122744151 122745049 -36854734 - Lx3A LINE L1 0 6981 6060 4 1521 1207 172 0 0 chr3 122745337 122745540 -36854243 - URR1B DNA MER1_type -22 203 1 4 1521 296 345 24 63 chr3 122745666 122745793 -36853990 + B4A SINE B4 54 175 -117 4 1521 288 154 0 0 chr3 122746673 122746725 -36853058 + (CA)n Simple_repeat Simple_repeat 1 52 0 4 1521 24 0 0 0 chr3 122746779 122746803 -36852980 + AT_rich Low_complexity Low_complexity 1 24 0 4 1521 355 325 8 16 chr3 122746877 122747002 -36852781 - ID_B1 SINE B4 -16 208 85 4 1521 447 52 0 0 chr3 122747163 122747221 -36852562 + (TTCC)n Simple_repeat Simple_repeat 2 59 0 4 1521 434 275 18 0 chr3 122747250 122747359 -36852424 - B1F SINE Alu -38 111 1 4 1521 454 246 26 9 chr3 122747759 122747874 -36851909 - PB1D7 SINE Alu -2 118 2 4 1521 270 240 35 167 chr3 122748678 122748815 -36850968 - Lx7 LINE L1 -1490 6206 6071 4 1521 242 271 0 0 chr3 122748816 122748864 -36850919 - Lx8 LINE L1 -575 6898 6851 4 1521 8774 257 56 57 chr3 122748869 122749460 -36850323 - Lx7 LINE L1 -1609 6087 5435 4 1521 426 39 0 0 chr3 122749460 122749512 -36850271 + (TTTTG)n Simple_repeat Simple_repeat 1 52 0 4 1521 8774 256 69 51 chr3 122749512 122750229 -36849554 - Lx7 LINE L1 -446 5434 4736 4 1521 185 0 40 0 chr3 122750229 122750254 -36849529 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 4 1521 1111 66 0 0 chr3 122750254 122750390 -36849393 - B1_Mm SINE Alu -11 136 1 4 1521 8774 256 69 51 chr3 122750390 122750505 -36849278 - Lx7 LINE L1 -1145 4735 4632 4 1521 551 15 15 0 chr3 122750505 122750573 -36849210 + (TC)n Simple_repeat Simple_repeat 2 70 0 4 1521 8774 256 69 51 chr3 122750573 122751327 -36848456 - Lx7 LINE L1 -1249 4631 3858 4 1521 960 151 0 0 chr3 122751327 122751473 -36848310 - B1_Mus1 SINE Alu 0 148 3 4 1521 8774 256 69 51 chr3 122751473 122752345 -36847438 - Lx7 LINE L1 -2023 3857 2990 4 1521 1871 166 49 33 chr3 122752345 122752713 -36847070 - ORR1D1 LTR MaLR 0 374 1 4 1521 8774 256 69 51 chr3 122752713 122753305 -36846478 - Lx7 LINE L1 -2891 2989 2395 4 1521 3107 215 25 30 chr3 122753989 122754804 -36844979 + Lx5 LINE L1 5531 6363 -687 4 1521 1546 275 52 16 chr3 122754830 122755365 -36844418 + Lx5 LINE L1 6506 7437 -23 4 1521 1663 153 26 98 chr3 122755427 122755804 -36843979 - ORR1C2 LTR MaLR 0 384 35 4 1521 518 212 83 25 chr3 122755812 122755933 -36843850 + B1_Mur1 SINE Alu 12 139 -10 4 1521 284 329 34 45 chr3 122757580 122757758 -36842025 + L2 LINE L2 1624 1799 -1620 4 1521 945 106 0 7 chr3 122757772 122757914 -36841869 + B2_Mm2 SINE B2 2 142 -53 4 1521 294 358 26 117 chr3 122757947 122758178 -36841605 + ID_B1 SINE B4 4 213 -11 4 1521 421 316 30 0 chr3 122758052 122758185 -36841598 + B1_Mur1 SINE Alu 9 145 -4 4 1521 1266 34 0 0 chr3 122758337 122758483 -36841300 + B1_Mus1 SINE Alu 2 147 -1 4 1521 602 104 10 0 chr3 122758488 122758584 -36841199 + (GAAAA)n Simple_repeat Simple_repeat 3 99 0 4 1521 862 9 19 0 chr3 122758640 122758747 -36841036 + (CA)n Simple_repeat Simple_repeat 2 110 0 4 1521 932 53 0 29 chr3 122758936 122758949 -36840834 - B1_Mus1 SINE Alu 0 148 139 4 1521 471 60 0 0 chr3 122758949 122759016 -36840767 + (TTTTG)n Simple_repeat Simple_repeat 2 68 0 4 1521 932 53 0 29 chr3 122759016 122759139 -36840644 - B1_Mus1 SINE Alu -10 138 16 4 1521 24 32 0 0 chr3 122759216 122759247 -36840536 + AT_rich Low_complexity Low_complexity 1 31 0 4 1521 360 250 58 79 chr3 122759267 122759406 -36840377 - ID_B1 SINE B4 -10 214 79 4 1521 230 281 12 0 chr3 122759726 122759808 -36839975 - B3A SINE B2 -109 89 7 4 1521 606 254 11 40 chr3 122759817 122759993 -36839790 - MTD LTR MaLR -231 188 18 4 1521 358 248 48 55 chr3 122760594 122760739 -36839044 - B1F SINE Alu -5 144 1 4 1521 306 0 0 0 chr3 122761424 122761458 -36838325 + (CTTG)n Simple_repeat Simple_repeat 2 35 0 4 1521 1146 56 0 0 chr3 122761458 122761601 -36838182 - B1_Mus1 SINE Alu -1 147 5 4 1521 327 258 110 24 chr3 122761942 122761967 -36837816 + ID SINE ID 54 89 -135 4 1521 280 329 83 49 chr3 122761967 122762111 -36837672 + B1F SINE Alu 1 149 0 4 1521 259 264 123 65 chr3 122762434 122762588 -36837195 + Lx9 LINE L1 6996 7158 -486 4 1521 472 245 9 0 chr3 122762631 122762737 -36837046 - ID_B1 SINE B4 -55 169 63 4 1521 2122 212 47 103 chr3 122762786 122763291 -36836492 - RLTR40 LTR ERVK -63 754 298 4 1521 423 0 0 0 chr3 122763291 122763338 -36836445 + (CA)n Simple_repeat Simple_repeat 2 48 0 4 1521 2122 212 47 103 chr3 122763338 122763578 -36836205 - RLTR40 LTR ERVK -520 297 53 4 1521 508 205 0 9 chr3 122763591 122763704 -36836079 + ID_B1 SINE B4 113 224 0 4 1521 262 260 0 0 chr3 122764076 122764149 -36835634 - B1_Mus1 SINE Alu -75 73 1 4 1521 274 337 20 10 chr3 122765728 122765830 -36833953 + L2c LINE L2 3284 3386 -1 4 1521 456 67 0 0 chr3 122766839 122766899 -36832884 + (TTTA)n Simple_repeat Simple_repeat 3 62 0 4 1521 22 35 0 0 chr3 122767504 122767533 -36832250 + AT_rich Low_complexity Low_complexity 1 29 0 4 1521 421 267 9 9 chr3 122768229 122768335 -36831448 + PB1D7 SINE Alu 6 111 -9 4 1521 438 20 0 0 chr3 122768360 122768411 -36831372 + (CA)n Simple_repeat Simple_repeat 1 51 0 4 1521 493 300 14 0 chr3 122769606 122769746 -36830037 + B1F2 SINE Alu 3 144 -5 4 1521 234 62 0 0 chr3 122769781 122769813 -36829970 + (A)n Simple_repeat Simple_repeat 1 32 0 4 1521 301 277 114 14 chr3 122770070 122770214 -36829569 + MIR SINE MIR 107 265 -3 4 1521 1191 244 39 13 chr3 122770621 122770933 -36828850 - Lx9 LINE L1 -715 6929 6610 4 1521 2474 62 6 39 chr3 122771248 122771586 -36828197 - ORR1A2 LTR MaLR 0 327 1 4 1521 192 294 105 29 chr3 122771706 122771811 -36827972 + L2a LINE L2 3313 3425 -1 4 1521 303 193 113 162 chr3 122772335 122772477 -36827306 - MTEb LTR MaLR -9 370 236 4 1521 22 35 0 0 chr3 122772490 122772519 -36827264 + AT_rich Low_complexity Low_complexity 1 29 0 4 1521 510 61 0 0 chr3 122772592 122772658 -36827125 + (TCC)n Simple_repeat Simple_repeat 2 67 0 4 1521 455 289 21 21 chr3 122772697 122772842 -36826941 + B1F SINE Alu 4 148 -1 4 1521 27 0 0 0 chr3 122774526 122774553 -36825230 + AT_rich Low_complexity Low_complexity 1 27 0 4 1521 304 113 70 0 chr3 122774563 122774634 -36825149 - Lx4A LINE L1 0 7058 6983 4 1521 724 104 0 0 chr3 122774636 122774732 -36825051 + Lx4B LINE L1 6723 6818 -240 4 1521 245 233 66 11 chr3 122775001 122775092 -36824691 + MER34 LTR ERV1 382 477 -65 4 1521 630 192 0 0 chr3 122775348 122775509 -36824274 + CT-rich Low_complexity Low_complexity 1 161 0 4 1521 394 319 7 49 chr3 122775511 122775653 -36824130 - ID_B1 SINE B4 -5 219 84 4 1521 325 232 14 0 chr3 122776800 122776869 -36822914 - ID4_ SINE ID -12 71 2 4 1521 2133 124 215 6 chr3 122777257 122777615 -36822168 - RLTR10C LTR ERVK -3 433 1 4 1521 498 238 149 139 chr3 122777715 122778090 -36821693 - MTE2b LTR MaLR 0 379 1 4 1521 1895 100 12 69 chr3 122778127 122778461 -36821322 + ORR1A2 LTR MaLR 6 320 -7 4 1521 550 208 0 9 chr3 122778461 122778568 -36821215 - PB1D10 SINE Alu -11 106 1 4 1521 827 303 94 23 chr3 122778644 122779080 -36820703 + MER31A LTR ERV1 6 472 -13 4 1521 1037 41 20 7 chr3 122779080 122779228 -36820555 + (GAAAA)n Simple_repeat Simple_repeat 3 152 0 4 1521 244 286 86 0 chr3 122780733 122780803 -36818980 - B1F SINE Alu -58 91 16 4 1521 505 269 14 7 chr3 122781753 122781899 -36817884 + B1F1 SINE Alu 3 149 0 4 1521 237 288 30 0 chr3 122782368 122782434 -36817349 - ID_B1 SINE B4 -71 153 86 4 1521 197 70 32 95 chr3 122783763 122783826 -36815957 + (TCTCTG)n Simple_repeat Simple_repeat 2 60 0 4 1521 294 272 56 37 chr3 122783862 122783969 -36815814 - PB1D7 SINE Alu -7 113 5 4 1521 278 50 0 24 chr3 122784282 122784323 -36815460 + (GAAA)n Simple_repeat Simple_repeat 1 40 0 4 1521 604 218 23 0 chr3 122784390 122784523 -36815260 + ID_B1 SINE B4 83 218 -6 4 1521 302 0 26 0 chr3 122784523 122784561 -36815222 + (GA)n Simple_repeat Simple_repeat 2 40 0 4 1521 21 0 0 0 chr3 122785200 122785221 -36814562 + AT_rich Low_complexity Low_complexity 1 21 0 4 1521 735 206 0 0 chr3 122785476 122785651 -36814132 + (CA)n Simple_repeat Simple_repeat 2 176 0 4 1521 193 122 39 39 chr3 122785665 122785716 -36814067 + (CATA)n Simple_repeat Simple_repeat 1 51 0 4 1521 889 164 17 45 chr3 122786019 122786198 -36813585 + B2_Mm2 SINE B2 5 178 -17 4 1521 428 274 62 50 chr3 122786768 122786929 -36812854 - RSINE1 SINE B4 0 165 3 4 1521 180 0 0 0 chr3 122787304 122787324 -36812459 + (T)n Simple_repeat Simple_repeat 1 20 0 4 1521 243 0 0 0 chr3 122787456 122787483 -36812300 + (TG)n Simple_repeat Simple_repeat 1 27 0 4 1521 659 140 0 7 chr3 122787483 122787627 -36812156 + (GA)n Simple_repeat Simple_repeat 2 144 0 4 1521 450 0 0 0 chr3 122787628 122787678 -36812105 + (TG)n Simple_repeat Simple_repeat 1 50 0 4 1521 992 52 15 0 chr3 122787678 122787812 -36811971 + B1_Mus2 SINE Alu 12 147 0 4 1521 333 14 86 14 chr3 122787813 122787883 -36811900 + (CAAA)n Simple_repeat Simple_repeat 2 76 0 4 1521 4389 16 24 6 chr3 122787913 122788413 -36811370 + L1Md_F2 LINE L1 6074 6582 0 4 1521 1320 233 70 3 chr3 122788420 122788751 -36811032 + MTD LTR MaLR 49 401 -18 5 1521 348 303 126 0 chr3 122789709 122789819 -36809964 - PB1D7 SINE Alu -4 123 1 5 1521 296 276 0 5 chr3 122790552 122790641 -36809142 - ID4 SINE ID -52 100 14 5 1521 235 279 83 31 chr3 122790642 122790659 -36809124 + PB1 SINE Alu 2 17 -110 5 1521 3192 71 16 20 chr3 122790659 122791105 -36808678 - Lx3_Mus LINE L1 0 7009 6566 5 1521 587 246 8 8 chr3 122791105 122791237 -36808546 + B1F1 SINE Alu 18 148 -1 5 1521 570 251 147 0 chr3 122791371 122791534 -36808249 + ID_B1 SINE B4 12 198 -26 5 1521 317 325 25 25 chr3 122792512 122792673 -36807110 + L2 LINE L2 2743 2903 -516 5 1521 228 67 0 0 chr3 122792865 122792895 -36806888 + (CCTG)n Simple_repeat Simple_repeat 2 31 0 5 1521 265 305 132 9 chr3 122793022 122793128 -36806655 + PB1D7 SINE Alu 2 120 0 5 1521 2056 158 50 48 chr3 122793638 122794056 -36805727 - MTD LTR MaLR 0 419 1 5 1521 776 242 56 14 chr3 122794228 122794442 -36805341 - ID_B1 SINE B4 0 224 2 5 1521 1179 54 7 0 chr3 122794638 122794785 -36804998 + B1_Mus1 SINE Alu 1 148 0 5 1521 717 170 54 7 chr3 122795013 122795161 -36804622 + MTD LTR MaLR 265 419 0 5 1521 272 48 24 0 chr3 122797368 122797410 -36802373 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 5 1521 266 90 66 22 chr3 122797621 122797669 -36802114 + A-rich Low_complexity Low_complexity 2 51 0 5 1521 3344 35 8 0 chr3 122797669 122798066 -36801717 + MTB LTR MaLR 1 400 0 5 1521 266 90 66 22 chr3 122798066 122798108 -36801675 + A-rich Low_complexity Low_complexity 52 96 0 5 1521 1539 178 103 34 chr3 122798197 122798547 -36801236 + ORR1D1 LTR MaLR 1 374 0 5 1521 2113 317 59 39 chr3 122798564 122798889 -36800894 + L1_Mur3 LINE L1 1426 1756 -4124 5 1521 1678 92 43 31 chr3 122798889 122799147 -36800636 + L1Md_F2 LINE L1 6310 6570 -12 5 1521 2113 291 54 166 chr3 122799147 122800701 -36799082 + L1_Mur3 LINE L1 1755 3011 -2866 5 1521 279 0 0 0 chr3 122800701 122800732 -36799051 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 5 1521 1126 58 0 0 chr3 122800732 122800869 -36798914 - B1_Mus2 SINE Alu -8 139 3 5 1521 1825 250 68 95 chr3 122800869 122801800 -36797983 + L1_Mur3 LINE L1 3012 3914 -1963 5 1521 866 276 137 90 chr3 122801828 122802594 -36797189 + Lx8 LINE L1 4582 5383 -464 5 1521 1708 211 31 46 chr3 122802600 122803017 -36796766 + MTD LTR MaLR 1 411 -8 5 1521 3427 293 76 33 chr3 122803054 122804606 -36795177 + Lx8 LINE L1 5429 7101 -372 5 1521 399 41 0 0 chr3 122804644 122804693 -36795090 + (T)n Simple_repeat Simple_repeat 1 49 0 5 1521 1474 209 70 17 chr3 122804706 122805061 -36794722 + ORR1D1 LTR MaLR 1 374 0 5 1521 870 150 20 13 chr3 122805084 122805233 -36794550 + B1_Mur4 SINE Alu 1 150 0 5 1521 223 204 55 18 chr3 122805620 122805675 -36794108 + B1F SINE Alu 3 59 -90 5 1521 624 27 0 0 chr3 122805718 122805792 -36793991 + (TC)n Simple_repeat Simple_repeat 2 75 0 5 1521 207 0 0 0 chr3 122806687 122806710 -36793073 + (G)n Simple_repeat Simple_repeat 1 23 0 5 1521 363 195 13 13 chr3 122806712 122806790 -36792993 - ID_B1 SINE B4 -22 202 125 5 1521 321 26 0 0 chr3 122807651 122807689 -36792094 + (TG)n Simple_repeat Simple_repeat 1 38 0 5 1521 2019 172 43 46 chr3 122808137 122808551 -36791232 + MTC LTR MaLR 1 413 -8 5 1521 304 188 0 59 chr3 122808973 122809041 -36790742 - ID4 SINE ID -18 65 2 5 1521 1203 77 10 20 chr3 122811564 122811762 -36788021 + URR1A DNA MER1_type 31 226 0 5 1521 348 241 8 97 chr3 122813109 122813233 -36786550 + MT2B LTR ERVL 152 264 -337 5 1521 882 144 7 0 chr3 122813128 122813267 -36786516 + B1_Mus2 SINE Alu 8 147 0 5 1521 325 160 40 40 chr3 122813267 122813391 -36786392 + A-rich Low_complexity Low_complexity 1 124 0 5 1521 192 40 0 0 chr3 122813456 122813481 -36786302 + (CA)n Simple_repeat Simple_repeat 2 26 0 5 1521 200 293 0 24 chr3 122814269 122814353 -36785430 + A-rich Low_complexity Low_complexity 4 85 0 5 1522 21 0 0 0 chr3 122815121 122815142 -36784641 + AT_rich Low_complexity Low_complexity 1 21 0 5 1522 180 0 0 0 chr3 122817336 122817356 -36782427 + (TCC)n Simple_repeat Simple_repeat 2 21 0 5 1522 499 260 41 0 chr3 122821845 122821968 -36777815 - B1F SINE Alu -7 142 15 5 1522 1102 82 0 13 chr3 122822404 122822553 -36777230 - B1_Mus1 SINE Alu 0 148 2 5 1522 645 243 64 5 chr3 122822714 122822917 -36776866 - B3 SINE B2 0 216 2 5 1522 501 156 0 0 chr3 122824319 122824415 -36775368 + (CA)n Simple_repeat Simple_repeat 1 96 0 5 1522 298 169 26 78 chr3 122824770 122824847 -36774936 + B1_Mur1 SINE Alu 76 148 -1 5 1522 318 26 0 0 chr3 122824876 122824915 -36774868 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 5 1522 492 335 97 65 chr3 122825179 122825489 -36774294 + LTR33 LTR ERVL 33 352 -163 5 1522 405 0 0 0 chr3 122826087 122826132 -36773651 + (TC)n Simple_repeat Simple_repeat 2 46 0 5 1522 447 19 0 0 chr3 122826378 122826430 -36773353 + (TG)n Simple_repeat Simple_repeat 1 52 0 5 1522 1179 68 0 0 chr3 122826513 122826675 -36773108 + (TCTA)n Simple_repeat Simple_repeat 4 165 0 5 1522 366 208 39 0 chr3 122826677 122826754 -36773029 - PB1D10 SINE Alu -11 106 27 5 1522 234 0 0 0 chr3 122827249 122827275 -36772508 + (CAG)n Simple_repeat Simple_repeat 1 26 0 5 1522 348 229 7 85 chr3 122827853 122827900 -36771883 - Lx6 LINE L1 0 7460 7420 5 1522 2384 82 28 16 chr3 122827900 122828223 -36771560 + ORR1A2 LTR MaLR 1 327 0 5 1522 348 229 7 85 chr3 122828223 122828328 -36771455 - Lx6 LINE L1 -41 7419 7320 5 1522 1195 27 7 0 chr3 122828330 122828478 -36771305 + L1Md_A LINE L1 6433 6581 -1 5 1522 1130 224 40 56 chr3 122828483 122828805 -36770978 - Lx7 LINE L1 -305 7391 7075 5 1522 429 275 107 0 chr3 122828855 122828986 -36770797 + Lx9 LINE L1 7270 7414 -230 5 1522 513 84 0 0 chr3 122828986 122829057 -36770726 + (CA)n Simple_repeat Simple_repeat 2 72 0 5 1522 24 0 0 0 chr3 122829185 122829209 -36770574 + AT_rich Low_complexity Low_complexity 1 24 0 5 1522 1913 82 55 7 chr3 122829247 122829317 -36770466 - L1_Mus3 LINE L1 -12 6626 6558 5 1522 198 0 0 0 chr3 122829317 122829339 -36770444 + (CCCCCT)n Simple_repeat Simple_repeat 2 23 0 5 1522 1913 82 55 7 chr3 122829339 122829540 -36770243 - L1_Mus3 LINE L1 -81 6557 6342 5 1522 247 319 72 18 chr3 122829540 122829706 -36770077 - Charlie1a DNA MER1_type -418 1037 863 5 1522 1064 114 57 6 chr3 122829706 122829882 -36769901 - Lx2 LINE L1 -38 6959 6775 5 1522 1723 65 74 0 chr3 122829880 122830111 -36769672 - Lx2 LINE L1 -352 6645 6398 5 1522 362 246 127 30 chr3 122830158 122830292 -36769491 + B1F SINE Alu 3 149 0 5 1522 23 33 0 0 chr3 122830368 122830398 -36769385 + AT_rich Low_complexity Low_complexity 1 30 0 5 1522 343 319 168 25 chr3 122830398 122830636 -36769147 - Charlie1a DNA MER1_type -676 779 508 5 1522 236 304 0 0 chr3 122830703 122830759 -36769024 - Charlie1a DNA MER1_type -1074 381 326 5 1522 488 307 17 11 chr3 122833087 122833265 -36766518 - B3A SINE B2 -18 180 2 5 1522 949 286 111 99 chr3 122834778 122835383 -36764400 + RLTR18 LTR ERVK 1 612 -4 5 1522 210 298 35 0 chr3 122835415 122835472 -36764311 + PB1D9 SINE Alu 47 105 -15 5 1522 562 143 33 0 chr3 122835477 122835568 -36764215 + B1_Mur2 SINE Alu 41 134 -15 5 1522 330 45 0 0 chr3 122835570 122835614 -36764169 + (CAAA)n Simple_repeat Simple_repeat 1 44 0 5 1522 625 288 319 7 chr3 122836342 122836637 -36763146 + Lx7 LINE L1 6780 7166 -530 5 1522 310 182 136 0 chr3 122836679 122836745 -36763038 + Lx7 LINE L1 7261 7335 -361 5 1522 1257 220 19 36 chr3 122837040 122837347 -36762436 + RLTR12B LTR ERVK 1 302 -226 5 1522 24 67 0 0 chr3 122837515 122837560 -36762223 + AT_rich Low_complexity Low_complexity 1 45 0 5 1522 502 300 8 0 chr3 122837577 122837707 -36762076 - ID_B1 SINE B4 -13 211 81 5 1522 4047 272 61 8 chr3 122838212 122839566 -36760217 - Lx7 LINE L1 -1782 5914 4484 5 1522 192 127 0 52 chr3 122839630 122839688 -36760095 + (TA)n Simple_repeat Simple_repeat 2 56 0 5 1522 736 314 16 20 chr3 122839802 122840049 -36759734 + B4A SINE B4 47 292 0 5 1522 981 288 55 33 chr3 122840104 122840560 -36759223 - L1MA6 LINE L1 -22 6278 5813 5 1522 384 262 22 63 chr3 122840549 122840710 -36759073 - L1M1 LINE L1 -693 5610 5452 5 1522 440 294 190 48 chr3 122842066 122842319 -36757464 + HAL1 LINE L1 1475 1790 -717 5 1522 384 22 0 0 chr3 122842319 122842364 -36757419 + (GA)n Simple_repeat Simple_repeat 1 45 0 5 1522 440 294 190 48 chr3 122842364 122842589 -36757194 + HAL1 LINE L1 1791 2021 -486 5 1522 342 0 0 0 chr3 122842994 122843032 -36756751 + (TG)n Simple_repeat Simple_repeat 1 38 0 5 1522 494 239 0 11 chr3 122843354 122843536 -36756247 + (TG)n Simple_repeat Simple_repeat 1 180 0 5 1522 719 160 11 33 chr3 122843544 122843725 -36756058 + (TATG)n Simple_repeat Simple_repeat 2 178 0 5 1522 266 228 0 25 chr3 122843709 122843790 -36755993 + (TATATG)n Simple_repeat Simple_repeat 1 79 0 5 1522 236 282 17 52 chr3 122844911 122845025 -36754758 - MIRm SINE MIR -139 137 21 5 1522 341 244 162 20 chr3 122846528 122846725 -36753058 + MamRep605 Unknown Unknown 127 351 -525 5 1522 2725 25 71 0 chr3 122847499 122847822 -36751961 - ORR1A1 LTR MaLR 0 346 1 5 1522 1474 145 14 174 chr3 122847896 122848263 -36751520 + ORR1C2 LTR MaLR 39 346 -38 5 1522 347 0 23 0 chr3 122848517 122848560 -36751223 + (GAAA)n Simple_repeat Simple_repeat 2 45 0 5 1522 241 262 22 67 chr3 122850044 122850134 -36749649 + RSINE1 SINE B4 5 90 -75 5 1522 514 276 41 7 chr3 122850167 122850313 -36749470 + RSINE1 SINE B4 1 151 -14 5 1522 210 211 0 37 chr3 122850338 122850392 -36749391 + GA-rich Low_complexity Low_complexity 4 55 0 5 1522 316 384 15 29 chr3 122850598 122850735 -36749048 + L2b LINE L2 3239 3373 -2 5 1522 562 164 14 8 chr3 122851616 122851727 -36748056 - B1_Mur3 SINE Alu -200 114 1 5 1522 423 0 0 0 chr3 122852073 122852120 -36747663 + (TCTA)n Simple_repeat Simple_repeat 3 49 0 5 1522 381 304 21 102 chr3 122853648 122853835 -36745948 + B4A SINE B4 2 173 -119 5 1522 310 159 15 31 chr3 122853874 122853939 -36745844 + HAL1-3A_ME LINE L1 1965 2028 -830 5 1522 246 62 0 0 chr3 122853939 122853971 -36745812 + (CA)n Simple_repeat Simple_repeat 2 33 0 6 1522 321 224 0 0 chr3 122855312 122855379 -36744404 + RMER30 DNA MER1_type 133 199 -3 6 1522 1122 177 0 24 chr3 122855549 122855757 -36744026 - B3 SINE B2 -6 210 8 6 1522 597 274 75 43 chr3 122856984 122857239 -36742544 + MTD LTR MaLR 10 272 -147 6 1522 2496 161 71 12 chr3 122857497 122858005 -36741778 + RMER1B Other Other 411 1066 0 6 1522 6150 83 16 14 chr3 122858006 122858880 -36740903 + Lx3_Mus LINE L1 6134 7009 0 6 1522 891 257 16 24 chr3 122858916 122859163 -36740620 - MTD LTR MaLR -161 258 14 6 1522 365 211 14 0 chr3 122859431 122859502 -36740281 - L1M2 LINE L1 -517 5780 5709 6 1522 721 282 88 12 chr3 122860212 122860463 -36739320 + B4 SINE B4 2 271 -21 6 1522 289 276 91 80 chr3 122860400 122860664 -36739119 + RMER12 LTR ERVK 696 962 -360 6 1522 320 338 0 0 chr3 122863079 122863153 -36736630 + ID4 SINE ID 8 81 -2 6 1522 414 0 0 0 chr3 122863443 122863489 -36736294 + (TC)n Simple_repeat Simple_repeat 1 46 0 6 1522 312 27 0 0 chr3 122863489 122863525 -36736258 + (CA)n Simple_repeat Simple_repeat 1 37 0 6 1522 359 336 67 47 chr3 122864638 122864788 -36734995 - RSINE1 SINE B4 -8 157 5 6 1522 589 237 37 0 chr3 122864881 122865016 -36734767 + B1F1 SINE Alu 3 142 -7 6 1522 195 125 0 0 chr3 122866750 122866790 -36732993 + (T)n Simple_repeat Simple_repeat 1 40 0 6 1522 302 339 0 18 chr3 122868114 122868228 -36731555 + G-rich Low_complexity Low_complexity 5 116 0 6 1522 259 248 131 19 chr3 122868717 122868824 -36730959 + B1F1 SINE Alu 2 89 -60 6 1522 360 0 0 0 chr3 122869800 122869840 -36729943 + (CA)n Simple_repeat Simple_repeat 1 40 0 6 1522 779 237 15 7 chr3 122870326 122870517 -36729266 + B3A SINE B2 1 195 -21 6 1522 360 0 0 0 chr3 122870897 122870937 -36728846 + (TG)n Simple_repeat Simple_repeat 1 40 0 6 1522 477 0 0 0 chr3 122870937 122870989 -36728794 + (GA)n Simple_repeat Simple_repeat 1 53 0 6 1522 285 286 70 26 chr3 122871522 122871637 -36728146 - MLT1C LTR MaLR -78 389 270 6 1522 1756 170 62 0 chr3 122872526 122872862 -36726921 - MTC LTR MaLR 0 421 65 6 1522 512 266 31 31 chr3 122873075 122873234 -36726549 + B4A SINE B4 126 284 -8 6 1522 234 167 0 69 chr3 122873206 122873264 -36726519 + RSINE1 SINE B4 112 165 0 6 1522 608 228 3 3 chr3 122873275 122873619 -36726164 + (CA)n Simple_repeat Simple_repeat 1 344 0 6 1522 242 185 28 84 chr3 122873640 122873711 -36726072 + ORR1C2 LTR MaLR 316 382 -2 6 1522 188 250 100 0 chr3 122875065 122875125 -36724658 - MIRb SINE MIR -169 99 34 6 1522 283 289 102 134 chr3 122875338 122875554 -36724229 - B4A SINE B4 -2 290 82 6 1522 1528 47 15 25 chr3 122875711 122875908 -36723875 - B2_Mm2 SINE B2 0 195 1 6 1522 325 250 112 0 chr3 122876210 122876326 -36723457 - ID_B1 SINE B4 -13 211 83 6 1522 353 252 56 9 chr3 122876372 122876480 -36723303 - PB1D7 SINE Alu -7 113 1 6 1522 227 269 115 0 chr3 122876480 122876584 -36723199 + MER74B LTR ERVL 73 188 -434 6 1522 557 270 40 6 chr3 122877155 122877330 -36722453 + MER74B LTR ERVL 442 622 0 6 1522 227 308 0 25 chr3 122877446 122877526 -36722257 - ID4 SINE ID 0 83 6 6 1522 270 0 0 0 chr3 122878119 122878149 -36721634 + (T)n Simple_repeat Simple_repeat 1 30 0 6 1522 264 331 88 59 chr3 122878720 122878890 -36720893 + MER5A DNA MER1_type 3 177 -12 6 1522 21 36 0 0 chr3 122879210 122879238 -36720545 + AT_rich Low_complexity Low_complexity 1 28 0 6 1522 872 121 7 0 chr3 122879358 122879499 -36720284 + (CA)n Simple_repeat Simple_repeat 1 142 0 6 1522 882 122 0 0 chr3 122880370 122880509 -36719274 + (TCCC)n Simple_repeat Simple_repeat 1 139 0 6 1522 378 74 0 0 chr3 122880526 122880580 -36719203 + (TG)n Simple_repeat Simple_repeat 1 54 0 6 1522 365 321 64 9 chr3 122880580 122880690 -36719093 - RSINE1 SINE B4 -47 118 3 6 1522 374 135 17 35 chr3 122881033 122881148 -36718635 + (TCTCTG)n Simple_repeat Simple_repeat 2 114 0 6 1522 195 204 0 0 chr3 122881168 122881212 -36718571 + CT-rich Low_complexity Low_complexity 2 45 0 6 1522 189 0 0 0 chr3 122881740 122881761 -36718022 + (TA)n Simple_repeat Simple_repeat 1 21 0 6 1522 278 312 25 0 chr3 122882165 122882245 -36717538 - MER81 DNA AcHobo -10 104 23 6 1522 732 185 34 0 chr3 122883582 122883728 -36716055 + B3A SINE B2 2 152 -46 6 1522 542 15 15 0 chr3 122883730 122883797 -36715986 + (CA)n Simple_repeat Simple_repeat 1 68 0 6 1522 287 319 122 25 chr3 122884204 122884400 -36715383 - MER20 DNA MER1_type -1 218 4 6 1522 267 272 135 1 chr3 122885093 122885197 -36714586 + MER74A LTR ERVL 248 423 -199 6 1522 303 28 0 0 chr3 122885197 122885233 -36714550 + (TG)n Simple_repeat Simple_repeat 1 36 0 6 1522 245 289 62 62 chr3 122885233 122885285 -36714498 + MER74A LTR ERVL 424 469 -153 6 1522 307 141 130 0 chr3 122886501 122886593 -36713190 - Lx9 LINE L1 0 7644 7541 6 1522 276 233 43 8 chr3 122886904 122887021 -36712762 + (TATAA)n Simple_repeat Simple_repeat 5 125 0 6 1522 675 117 0 0 chr3 122887930 122888033 -36711750 + (GGGA)n Simple_repeat Simple_repeat 4 106 0 6 1522 2591 265 88 24 chr3 122888121 122889005 -36710778 + RCHARR1 DNA MER1_type 4 944 -30 6 1522 1170 191 133 16 chr3 122889075 122889383 -36710400 + ORR1D1 LTR MaLR 1 344 -30 6 1522 195 129 0 0 chr3 122889383 122889414 -36710369 + (TC)n Simple_repeat Simple_repeat 1 31 0 6 1522 934 41 0 0 chr3 122889416 122889539 -36710244 - B1_Mus1 SINE Alu -7 141 19 6 1522 250 150 0 0 chr3 122889535 122889575 -36710208 + ORR1D1 LTR MaLR 345 384 0 6 1522 1473 39 0 0 chr3 122889985 122890165 -36709618 + (CA)n Simple_repeat Simple_repeat 1 180 0 6 1522 671 303 26 4 chr3 122892249 122892478 -36707305 + Lx9 LINE L1 7237 7470 -174 6 1522 324 48 0 0 chr3 122892480 122892522 -36707261 + (CA)n Simple_repeat Simple_repeat 2 43 0 6 1522 597 217 0 0 chr3 122894491 122894620 -36705163 + ORR1B1 LTR MaLR 1 129 -265 6 1522 228 295 24 55 chr3 122894650 122894815 -36704968 + L1_Mur3 LINE L1 444 603 -7109 6 1522 246 265 71 10 chr3 122895228 122895327 -36704456 - ORR1E LTR MaLR -254 105 1 6 1522 22 0 0 0 chr3 122896070 122896092 -36703691 + AT_rich Low_complexity Low_complexity 1 22 0 6 1522 237 321 0 24 chr3 122896228 122896311 -36703472 + ID4_ SINE ID 3 83 0 6 1522 36280 42 0 3 chr3 122897718 122902974 -36696809 + L1Md_T LINE L1 253 5589 -297 6 1522 8654 31 0 0 chr3 122902974 122903970 -36695813 + L1Md_T LINE L1 5590 6585 0 6 1522 520 266 7 86 chr3 122904163 122904303 -36695480 - RSINE1 SINE B4 -36 129 1 6 1522 508 130 30 0 chr3 122904456 122904587 -36695196 + (TCTG)n Simple_repeat Simple_repeat 2 136 0 6 1522 710 168 7 0 chr3 122905066 122905203 -36694580 + (TA)n Simple_repeat Simple_repeat 2 139 0 6 1522 251 284 40 0 chr3 122905515 122905589 -36694194 + ID2 SINE ID 1 77 -6 6 1522 504 0 0 0 chr3 122905744 122905800 -36693983 + (TG)n Simple_repeat Simple_repeat 1 56 0 6 1522 183 42 0 0 chr3 122906229 122906253 -36693530 + (TG)n Simple_repeat Simple_repeat 1 24 0 6 1522 463 292 56 49 chr3 122906257 122906419 -36693364 - RSINE1 SINE B4 0 165 3 6 1522 718 309 126 8 chr3 122907119 122907373 -36692410 - B4A SINE B4 -2 290 7 6 1522 331 303 66 29 chr3 122908128 122908264 -36691519 + B1F SINE Alu 1 141 -8 6 1522 303 331 136 11 chr3 122909251 122909523 -36690260 + L1M5 LINE L1 5264 5569 -604 6 1522 222 91 0 0 chr3 122910107 122910140 -36689643 + (TAA)n Simple_repeat Simple_repeat 2 34 0 6 1522 788 181 141 16 chr3 122910997 122911188 -36688595 - B3 SINE B2 0 216 2 6 1522 239 0 32 0 chr3 122912285 122912316 -36687467 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 6 1522 434 267 0 19 chr3 122912340 122912447 -36687336 - ID_B1 SINE B4 -40 184 80 6 1522 443 285 0 55 chr3 122912913 122913146 -36686637 + (TGGA)n Simple_repeat Simple_repeat 1 220 0 6 1522 294 291 69 6 chr3 122913974 122914133 -36685650 - L1MA4 LINE L1 -371 5929 5761 6 1522 1315 151 107 4 chr3 122914164 122914416 -36685367 - ORR1B2 LTR MaLR -89 278 1 6 1522 3794 87 45 109 chr3 122914790 122915573 -36684210 - RMER17A LTR ERVK -18 733 1 6 1522 271 300 0 0 chr3 122917058 122917128 -36682655 + CT-rich Low_complexity Low_complexity 1 70 0 6 1522 345 47 0 0 chr3 122917516 122917559 -36682224 + (GA)n Simple_repeat Simple_repeat 2 44 0 6 1522 524 239 21 14 chr3 122918070 122918210 -36681573 - RSINE1 SINE B4 0 165 25 6 1522 207 0 0 0 chr3 122918609 122918632 -36681151 + (TA)n Simple_repeat Simple_repeat 2 24 0 6 1522 333 0 0 0 chr3 122918632 122918668 -36681115 + (TG)n Simple_repeat Simple_repeat 2 38 0 6 1522 185 294 0 19 chr3 122918848 122918900 -36680883 - MIR3 SINE MIR -43 165 115 6 1522 496 235 0 42 chr3 122919123 122919243 -36680540 + RSINE1 SINE B4 3 117 -48 6 1522 315 0 0 0 chr3 122919244 122919279 -36680504 + (CA)n Simple_repeat Simple_repeat 2 36 0 6 1522 2040 105 54 3 chr3 122919414 122919710 -36680073 + RLTR10E LTR ERVK 1 311 0 6 1522 231 157 0 0 chr3 122920494 122920545 -36679238 + CT-rich Low_complexity Low_complexity 2 52 0 6 1522 279 71 0 0 chr3 122921445 122921487 -36678296 + (TCTG)n Simple_repeat Simple_repeat 2 43 0 6 1522 1859 131 49 101 chr3 122921630 122922037 -36677746 + ORR1B1 LTR MaLR 1 386 -8 6 1522 529 196 0 0 chr3 122922517 122922619 -36677164 + B1_Mur1 SINE Alu 17 118 -31 6 1522 403 341 22 71 chr3 122922634 122922817 -36676966 + B4A SINE B4 1 174 -118 6 1522 240 241 0 18 chr3 122922852 122922907 -36676876 + RSINE1 SINE B4 108 161 -4 6 1522 537 237 0 0 chr3 122922914 122923397 -36676386 + (CA)n Simple_repeat Simple_repeat 1 483 0 7 1522 474 229 0 0 chr3 122923454 122923607 -36676176 + (CA)n Simple_repeat Simple_repeat 2 154 0 7 1522 480 244 0 0 chr3 122923629 122923809 -36675974 + (CA)n Simple_repeat Simple_repeat 1 180 0 7 1522 426 269 0 0 chr3 122923863 122924144 -36675639 + (CA)n Simple_repeat Simple_repeat 1 281 0 7 1522 184 104 0 59 chr3 122924189 122924240 -36675543 + (TATAA)n Simple_repeat Simple_repeat 1 48 0 7 1522 38 22 0 0 chr3 122924282 122924327 -36675456 + AT_rich Low_complexity Low_complexity 1 45 0 7 1522 467 254 239 19 chr3 122924432 122924650 -36675133 + B4A SINE B4 1 266 -26 7 1522 474 96 0 0 chr3 122924651 122924724 -36675059 + (CA)n Simple_repeat Simple_repeat 2 74 0 7 1522 401 284 9 0 chr3 122924945 122925061 -36674722 + ID_B1 SINE B4 99 215 -9 7 1522 1613 128 125 21 chr3 122926134 122926462 -36673321 + ORR1B2 LTR MaLR 1 362 -5 7 1522 264 253 51 0 chr3 122926895 122926974 -36672809 + Charlie7 DNA MER1_type 759 841 -1771 7 1522 350 304 152 65 chr3 122926995 122927185 -36672598 + Charlie7 DNA MER1_type 926 1159 -1453 7 1522 489 292 54 0 chr3 122927185 122927315 -36672468 + B1F1 SINE Alu 1 137 -12 7 1522 270 0 0 0 chr3 122927321 122927351 -36672432 + (CAAA)n Simple_repeat Simple_repeat 1 30 0 7 1522 350 304 152 65 chr3 122927351 122927674 -36672109 + Charlie7 DNA MER1_type 1163 1491 -1121 7 1522 220 146 73 0 chr3 122927694 122927735 -36672048 - B1F SINE Alu -60 89 46 7 1522 213 132 0 0 chr3 122928053 122928091 -36671692 + (A)n Simple_repeat Simple_repeat 1 38 0 7 1522 225 331 123 6 chr3 122928285 122928455 -36671328 + Charlie7 DNA MER1_type 2094 2283 -329 7 1522 678 243 14 0 chr3 122928439 122928583 -36671200 + B3 SINE B2 60 205 -11 7 1522 325 168 19 38 chr3 122928730 122928835 -36670948 + (TATATG)n Simple_repeat Simple_repeat 4 106 0 7 1522 32 67 0 0 chr3 122928868 122928928 -36670855 + AT_rich Low_complexity Low_complexity 1 60 0 7 1522 677 150 13 13 chr3 122928941 122929090 -36670693 + (TA)n Simple_repeat Simple_repeat 2 150 0 7 1522 2172 135 38 21 chr3 122929136 122929508 -36670275 + ORR1C1 LTR MaLR 1 378 0 7 1522 198 0 0 0 chr3 122929633 122929655 -36670128 + (CA)n Simple_repeat Simple_repeat 2 23 0 7 1522 471 246 48 48 chr3 122929655 122929779 -36670004 + B3 SINE B2 81 204 -12 7 1522 296 358 0 9 chr3 122929848 122929955 -36669828 + ID_B1 SINE B4 109 214 -10 7 1522 291 299 26 77 chr3 122930011 122930167 -36669616 + B1F1 SINE Alu 2 149 0 7 1522 303 93 0 0 chr3 122930167 122930210 -36669573 + (GGAA)n Simple_repeat Simple_repeat 4 46 0 7 1522 452 204 220 20 chr3 122930260 122930410 -36669373 - MTC-int LTR MaLR -1078 180 1 7 1522 5828 200 45 60 chr3 122930442 122931424 -36668359 + Lx7 LINE L1 6325 7333 -363 7 1522 234 0 0 0 chr3 122931424 122931450 -36668333 + (TTTG)n Simple_repeat Simple_repeat 1 26 0 7 1522 5828 200 45 60 chr3 122931450 122931533 -36668250 + Lx7 LINE L1 7334 7399 -297 7 1522 294 29 0 0 chr3 122931533 122931568 -36668215 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 7 1522 897 87 95 0 chr3 122931568 122931694 -36668089 - B1_Mus2 SINE Alu -9 138 1 7 1522 5828 200 45 60 chr3 122931694 122932015 -36667768 + Lx7 LINE L1 7400 7690 -6 7 1522 723 242 22 33 chr3 122932339 122932523 -36667260 + B3A SINE B2 1 182 -16 7 1522 1551 57 0 5 chr3 122932602 122932795 -36666988 - B2_Mm2 SINE B2 -2 193 2 7 1522 854 144 0 0 chr3 122933023 122933162 -36666621 + B1_Mur3 SINE Alu 11 149 0 7 1522 286 274 0 0 chr3 122933181 122933243 -36666540 + ID4_ SINE ID 4 65 -18 7 1522 503 147 0 33 chr3 122933251 122933371 -36666412 + GA-rich Low_complexity Low_complexity 1 116 0 7 1522 353 159 112 0 chr3 122933380 122933487 -36666296 + L1M2 LINE L1 3064 3182 -2961 7 1522 1126 174 224 31 chr3 122933477 122933794 -36665989 - Lx6 LINE L1 -176 7284 6907 7 1522 223 204 0 22 chr3 122933890 122933935 -36665848 + (CATA)n Simple_repeat Simple_repeat 3 46 0 7 1522 180 0 0 0 chr3 122934116 122934136 -36665647 + (T)n Simple_repeat Simple_repeat 1 20 0 7 1522 1889 186 29 11 chr3 122934371 122934746 -36665037 - ORR1C2 LTR MaLR 0 384 3 7 1522 1385 70 10 41 chr3 122935162 122935356 -36664427 - B2_Mm1t SINE B2 -4 189 2 7 1522 381 202 53 0 chr3 122936151 122936245 -36663538 - ID_B1 SINE B4 -5 219 121 7 1522 22 35 0 0 chr3 122936472 122936501 -36663282 + AT_rich Low_complexity Low_complexity 1 29 0 7 1522 265 177 177 0 chr3 122936730 122936792 -36662991 - ID4_ SINE ID -10 73 1 7 1522 522 200 65 80 chr3 122938049 122938250 -36661533 + Lx9 LINE L1 7445 7642 -2 7 1522 278 290 121 21 chr3 122939713 122939903 -36659880 - Lx8 LINE L1 -77 7396 7188 7 1522 623 246 152 59 chr3 122940467 122940756 -36659027 + ORR1E LTR MaLR 36 351 -8 7 1522 555 282 208 19 chr3 122940840 122941142 -36658641 - ORR1E LTR MaLR 0 359 1 7 1522 565 222 35 0 chr3 122941154 122941298 -36658485 - MLT1B LTR MaLR -235 155 7 7 1522 480 256 82 18 chr3 122941315 122941486 -36658297 + B3A SINE B2 1 182 -16 7 1522 221 295 25 13 chr3 122941493 122941572 -36658211 + (CATA)n Simple_repeat Simple_repeat 3 82 0 7 1522 216 0 0 0 chr3 122941580 122941604 -36658179 + (CA)n Simple_repeat Simple_repeat 2 25 0 7 1522 456 344 61 9 chr3 122941687 122941916 -36657867 + MamGypLTR1a LTR Gypsy 5 245 -539 7 1522 992 251 111 49 chr3 122942196 122942540 -36657243 - MLT1A0 LTR MaLR 0 365 1 7 1522 306 345 28 7 chr3 122943037 122943180 -36656603 + Arthur1B DNA Tip100 1 146 -1079 7 1522 383 286 136 47 chr3 122943288 122943523 -36656260 + Arthur1B DNA Tip100 310 565 -660 7 1522 336 48 0 0 chr3 122944010 122944052 -36655731 + (CA)n Simple_repeat Simple_repeat 2 43 0 7 1522 3482 38 0 0 chr3 122944530 122944926 -36654857 - MTA_Mm LTR MaLR 0 396 1 7 190 9588 26 1 0 chr3 122944926 122946023 -36653760 - MTA_Mm-int LTR MaLR 0 1098 1 7 1523 3432 38 2 0 chr3 122946023 122946418 -36653365 - MTA_Mm LTR MaLR 0 396 1 7 1523 377 278 2 45 chr3 122947989 122948131 -36651652 + PB1D10 SINE Alu 10 139 -8 7 1523 967 260 24 58 chr3 122949333 122949627 -36650156 + B4A SINE B4 9 292 0 7 1523 441 0 0 0 chr3 122949855 122949904 -36649879 + (TC)n Simple_repeat Simple_repeat 2 50 0 7 1523 1159 70 0 0 chr3 122949904 122950047 -36649736 - B1_Mm SINE Alu -4 143 1 7 1523 607 275 35 85 chr3 122950090 122950258 -36649525 + B3 SINE B2 3 165 -33 7 1523 559 250 50 50 chr3 122950258 122950439 -36649344 + B3A SINE B2 1 181 -17 7 1523 478 275 35 85 chr3 122950439 122950469 -36649314 + B2_Mm2 SINE B2 164 191 -4 7 1523 895 139 20 14 chr3 122950690 122950836 -36648947 - B1_Mur3 SINE Alu -1 148 2 7 1523 308 248 28 28 chr3 122950837 122951018 -36648765 - B3 SINE B2 -2 214 2 7 1523 397 84 0 27 chr3 122951077 122951150 -36648633 + (TA)n Simple_repeat Simple_repeat 2 72 0 7 1523 959 316 25 27 chr3 122951155 122951600 -36648183 + L1_Mur3 LINE L1 3213 3656 -2224 7 1523 1836 241 38 55 chr3 122951595 122951881 -36647902 + L1_Mur3 LINE L1 4420 4696 -1184 7 1523 719 200 210 6 chr3 122951881 122952057 -36647726 - B3 SINE B2 0 216 5 7 1523 1836 241 38 55 chr3 122952057 122952196 -36647587 + L1_Mur3 LINE L1 4697 4820 -1060 7 1523 429 20 0 0 chr3 122952196 122952246 -36647537 + (TTTTA)n Simple_repeat Simple_repeat 2 51 0 7 1523 1836 241 38 55 chr3 122952246 122952378 -36647405 + L1_Mur3 LINE L1 4821 4967 -913 7 1523 344 254 86 27 chr3 122952381 122952468 -36647315 + L1_Mur3 LINE L1 5167 5252 -628 7 1523 2824 76 58 35 chr3 122952468 122952866 -36646917 + MTB_Mm LTR MaLR 1 407 0 7 1523 344 254 86 27 chr3 122952866 122952964 -36646819 + L1_Mur3 LINE L1 5253 5363 -517 7 1523 402 222 0 45 chr3 122953070 122953202 -36646581 + Lx9 LINE L1 7519 7644 0 7 1523 886 299 25 48 chr3 122953295 122953653 -36646130 + Lx8 LINE L1 6911 7260 -213 7 1523 203 340 19 19 chr3 122953733 122953841 -36645942 + G-rich Low_complexity Low_complexity 1 108 0 7 1523 788 298 68 78 chr3 122954191 122954573 -36645210 + MTE2a LTR MaLR 1 378 -1 7 1523 251 319 97 0 chr3 122954652 122954796 -36644987 + LTR50 LTR ERVL 1 158 -637 7 1523 5824 86 5 21 chr3 122955285 122955543 -36644240 + Lx LINE L1 5864 6118 -536 7 1523 429 70 0 0 chr3 122955543 122955600 -36644183 + (TG)n Simple_repeat Simple_repeat 2 58 0 7 1523 5824 86 5 21 chr3 122955600 122956140 -36643643 + Lx LINE L1 6119 6649 -5 7 1523 230 106 21 0 chr3 122956334 122956381 -36643402 + (TTTTTG)n Simple_repeat Simple_repeat 1 48 0 7 1523 2142 158 0 29 chr3 122956382 122956759 -36643024 - RLTR17 LTR ERVK -325 367 2 7 1523 8603 193 51 68 chr3 122956760 122959321 -36640462 - RMER3D-int LTR ERVK 0 2842 1 7 1523 2573 145 101 8 chr3 122959321 122959816 -36639967 - RLTR17 LTR ERVK 0 692 152 7 1523 286 237 0 0 chr3 122959817 122959876 -36639907 - B3 SINE B2 -156 60 2 7 1523 24 67 0 0 chr3 122959992 122960037 -36639746 + AT_rich Low_complexity Low_complexity 1 45 0 7 1523 1180 43 0 0 chr3 122960196 122960334 -36639449 - B1_Mm SINE Alu -9 138 1 7 1523 671 24 12 0 chr3 122960649 122960734 -36639049 + (GAGAA)n Simple_repeat Simple_repeat 5 90 0 7 1523 22 0 0 0 chr3 122960920 122960942 -36638841 + AT_rich Low_complexity Low_complexity 1 22 0 7 1523 248 340 84 36 chr3 122961110 122961360 -36638423 - BLACKJACK DNA AcHobo -1109 1835 1574 7 1523 480 304 103 18 chr3 122961364 122961645 -36638138 - BLACKJACK DNA AcHobo -1680 1264 960 7 1523 382 364 15 41 chr3 122961773 122961968 -36637815 - BLACKJACK DNA AcHobo -2307 637 448 7 1523 21 0 0 0 chr3 122963290 122963311 -36636472 + AT_rich Low_complexity Low_complexity 1 21 0 7 1523 225 308 98 16 chr3 122964071 122964193 -36635590 + ORR1E LTR MaLR 8 139 -220 7 1523 552 300 82 92 chr3 122964391 122964685 -36635098 + B4 SINE B4 2 292 0 7 1523 1278 219 83 88 chr3 122964791 122965010 -36634773 + RMER4A LTR ERVK 21 247 -219 7 1523 523 70 5 86 chr3 122965010 122965197 -36634586 + (CTG)n Simple_repeat Simple_repeat 1 172 0 7 1523 1278 219 83 88 chr3 122965197 122965422 -36634361 + RMER4A LTR ERVK 248 463 -3 7 1523 222 231 0 0 chr3 122965696 122965761 -36634022 + CT-rich Low_complexity Low_complexity 1 65 0 7 1523 1565 231 30 6 chr3 122965895 122966260 -36633523 + ORR1D1 LTR MaLR 1 374 0 7 1523 2910 196 34 25 chr3 122966260 122966905 -36632878 + ORR1D1-int LTR MaLR 1 651 -719 7 1523 666 162 226 7 chr3 122966914 122967069 -36632714 + B3 SINE B2 25 213 -3 7 1523 1878 213 46 27 chr3 122967080 122967557 -36632226 + RMER19C LTR ERVK 126 611 0 7 1523 394 58 0 104 chr3 122967611 122967707 -36632076 + (CATTC)n Simple_repeat Simple_repeat 4 89 0 7 1523 2742 178 130 10 chr3 122967707 122968315 -36631468 + ORR1D1-int LTR MaLR 687 1367 -3 7 1523 1494 208 64 9 chr3 122968320 122968549 -36631234 + ORR1D1 LTR MaLR 1 245 -129 7 1523 216 0 0 0 chr3 122968549 122968573 -36631210 + (CCTG)n Simple_repeat Simple_repeat 3 26 0 7 1523 1494 208 64 9 chr3 122968573 122968673 -36631110 + ORR1D1 LTR MaLR 246 348 -26 7 1523 1035 147 0 0 chr3 122968683 122968860 -36630923 + (GAA)n Simple_repeat Simple_repeat 1 177 0 7 1523 966 121 7 0 chr3 122969152 122969293 -36630490 + B1_Mus1 SINE Alu 5 146 -2 7 1523 1157 223 102 10 chr3 122969320 122969615 -36630168 + MTE2b LTR MaLR 47 368 -11 7 1523 27 87 0 0 chr3 122970318 122970387 -36629396 + GC_rich Low_complexity Low_complexity 1 69 0 7 1523 24 0 0 0 chr3 122970416 122970440 -36629343 + GC_rich Low_complexity Low_complexity 1 24 0 7 1523 914 126 15 0 chr3 122971542 122971677 -36628106 + B1_Mur3 SINE Alu 1 137 -12 7 1523 658 239 7 0 chr3 122973036 122973178 -36626605 + ID_B1 SINE B4 81 223 -1 7 1523 947 30 38 8 chr3 122973370 122973502 -36626281 - B1_Mus2 SINE Alu 0 147 12 8 1523 218 167 55 3 chr3 122974018 122974084 -36625699 + ID2 SINE ID 7 74 -9 8 1523 201 74 0 0 chr3 122974100 122974127 -36625656 + (CATA)n Simple_repeat Simple_repeat 4 30 0 8 1523 378 146 0 0 chr3 122974804 122974886 -36624897 + (GA)n Simple_repeat Simple_repeat 1 82 0 8 1523 344 316 16 49 chr3 122974895 122975018 -36624765 - MER20 DNA MER1_type -82 137 19 8 1523 535 202 0 0 chr3 122976458 122976562 -36623221 + MTD LTR MaLR 13 116 -303 8 1523 267 152 0 0 chr3 122976562 122976608 -36623175 + (CACCAT)n Simple_repeat Simple_repeat 5 50 0 8 1523 314 215 0 44 chr3 122976608 122976676 -36623107 + MTD LTR MaLR 125 189 -230 8 1523 1221 174 14 5 chr3 122977142 122977361 -36622422 + MTD LTR MaLR 192 412 -7 8 1523 511 240 84 0 chr3 122977812 122977966 -36621817 + L1MA6 LINE L1 5891 6057 -243 8 1523 251 191 16 16 chr3 122977996 122978060 -36621723 + (TA)n Simple_repeat Simple_repeat 1 64 0 8 1523 29 28 0 0 chr3 122978113 122978149 -36621634 + AT_rich Low_complexity Low_complexity 1 36 0 8 1523 251 360 31 16 chr3 122978244 122978371 -36621412 + B1F SINE Alu 21 149 0 8 1523 417 20 0 0 chr3 122978652 122978702 -36621081 + (TG)n Simple_repeat Simple_repeat 1 50 0 8 1523 192 192 181 60 chr3 122978850 122978933 -36620850 - MIRc SINE MIR -115 153 61 8 1523 1109 111 65 15 chr3 122979043 122979244 -36620539 + MTC LTR MaLR 1 211 -210 8 1523 5539 100 14 2 chr3 122979244 122980280 -36619503 - Lx LINE L1 -312 6342 5293 8 1523 3195 61 0 17 chr3 122980280 122980683 -36619100 - MTA_Mm LTR MaLR 0 396 1 8 1523 5043 121 3 7 chr3 122980683 122980827 -36618956 - Lx LINE L1 -591 5292 5153 8 1523 1800 115 43 33 chr3 122980827 122981132 -36618651 + Lx LINE L1 6346 6653 -1 8 1523 366 23 0 0 chr3 122981132 122981175 -36618608 + (GA)n Simple_repeat Simple_repeat 1 43 0 8 1523 1480 111 4 9 chr3 122981180 122981407 -36618376 + MTC LTR MaLR 196 421 0 8 1523 1423 52 17 0 chr3 122981821 122981993 -36617790 - B2_Mm2 SINE B2 -19 176 2 8 1523 1098 43 65 0 chr3 122982397 122982535 -36617248 + B1_Mm SINE Alu 1 147 0 8 1523 784 192 0 0 chr3 122982683 122982813 -36616970 + B1_Mur1 SINE Alu 3 132 -17 8 1523 469 276 34 8 chr3 122983745 122983862 -36615921 + B1F SINE Alu 30 149 0 8 1523 1216 282 59 145 chr3 122983864 122984884 -36614899 + Lx8 LINE L1 6534 7465 -8 8 1523 312 164 0 0 chr3 122984952 122985019 -36614764 + GA-rich Low_complexity Low_complexity 3 69 0 8 1523 348 83 0 0 chr3 122986378 122986426 -36613357 + (TC)n Simple_repeat Simple_repeat 2 49 0 8 1523 200 288 0 15 chr3 122986428 122986495 -36613288 + T-rich Low_complexity Low_complexity 2 67 0 8 1523 234 0 0 0 chr3 122986612 122986638 -36613145 + (TC)n Simple_repeat Simple_repeat 2 27 0 8 1523 2952 289 72 27 chr3 122986638 122987673 -36612110 - Lx8 LINE L1 -93 7380 6300 8 1523 1691 275 59 27 chr3 122987685 122988421 -36611362 + Lx8 LINE L1 5344 6152 -1321 8 1523 705 224 102 14 chr3 122988421 122988625 -36611158 - ORR1C2 LTR MaLR 0 384 154 8 1523 242 297 66 0 chr3 122988714 122988805 -36610978 - B1F1 SINE Alu -52 97 1 8 1523 754 252 90 10 chr3 122988945 122989145 -36610638 + B3 SINE B2 1 216 0 8 1523 876 203 30 65 chr3 122989147 122989336 -36610447 + B3A SINE B2 2 188 -10 8 1523 198 0 0 0 chr3 122989336 122989358 -36610425 + (CAT)n Simple_repeat Simple_repeat 2 23 0 8 1523 236 286 13 0 chr3 122989734 122989811 -36609972 - ID2 SINE ID 0 83 6 8 1523 334 202 91 50 chr3 122989849 122989948 -36609835 - B3A SINE B2 -95 103 1 8 1523 529 268 53 17 chr3 122990061 122990298 -36609485 - MLT1A1 LTR MaLR -5 403 112 8 1523 863 122 29 0 chr3 122990607 122990746 -36609037 - B1_Mus1 SINE Alu -1 147 5 8 1523 692 237 56 11 chr3 122991206 122991385 -36608398 - B3A SINE B2 -11 187 1 8 1523 267 31 0 0 chr3 122991410 122991442 -36608341 + (CAAAA)n Simple_repeat Simple_repeat 4 35 0 8 1523 23 0 0 0 chr3 122991529 122991552 -36608231 + AT_rich Low_complexity Low_complexity 1 23 0 8 1523 444 289 52 13 chr3 122991904 122992058 -36607725 + RSINE1 SINE B4 3 162 -3 8 1523 284 266 25 0 chr3 122993526 122993605 -36606178 - ID4 SINE ID -1 82 2 8 1523 1009 183 26 60 chr3 122994041 122994274 -36605509 + URR1B DNA MER1_type 1 225 0 8 1523 334 141 42 0 chr3 122994291 122994362 -36605421 + C-rich Low_complexity Low_complexity 6 79 0 8 1523 903 174 0 0 chr3 122994362 122994525 -36605258 - MTD LTR MaLR -14 405 252 8 1523 2741 217 52 27 chr3 122994523 122995266 -36604517 - MTD-int LTR MaLR -495 763 2 8 1523 1429 190 198 3 chr3 122995267 122995616 -36604167 - MTD LTR MaLR 0 419 3 8 1523 540 268 99 59 chr3 122996017 122996219 -36603564 + B3 SINE B2 1 210 -6 8 1523 252 167 0 0 chr3 122997024 122997072 -36602711 + T-rich Low_complexity Low_complexity 1 48 0 8 1523 238 318 11 11 chr3 122997374 122997463 -36602320 - MLT1H LTR MaLR -446 103 15 8 1523 249 291 187 0 chr3 122997588 122997720 -36602063 + ORR1E LTR MaLR 3 159 -200 8 1523 1364 255 14 32 chr3 122997720 122998089 -36601694 + ORR1D2 LTR MaLR 1 362 -8 8 1523 481 281 6 6 chr3 122998768 122998929 -36600854 + (TG)n Simple_repeat Simple_repeat 1 161 0 8 1523 644 223 0 6 chr3 122998930 122999106 -36600677 + (TA)n Simple_repeat Simple_repeat 2 176 0 8 1523 297 217 18 28 chr3 122999099 122999208 -36600575 + (TATG)n Simple_repeat Simple_repeat 1 108 0 8 1523 240 219 47 0 chr3 123002303 123002367 -36597416 + CT-rich Low_complexity Low_complexity 2 68 0 1 1523 309 193 18 0 chr3 123003046 123003103 -36596680 - HAL1-3A_ME LINE L1 -825 2033 1976 2 1523 547 236 11 11 chr3 123003121 123003297 -36596486 + (TATG)n Simple_repeat Simple_repeat 4 179 0 3 1523 232 329 175 34 chr3 123003474 123004148 -36595635 + L2 LINE L2 2173 2941 -478 4 1523 374 280 56 8 chr3 123004559 123004685 -36595098 + B1F SINE Alu 10 141 -8 5 1523 262 203 32 79 chr3 123004697 123004772 -36595011 + ID4 SINE ID 3 70 -13 6 1523 3832 241 78 25 chr3 123004839 123005945 -36593838 - Lx8 LINE L1 0 7473 6296 7 1523 1319 218 40 43 chr3 123006170 123006516 -36593267 - MTD LTR MaLR 0 419 75 8 1523 1592 249 96 79 chr3 123006548 123006739 -36593044 - Lx8 LINE L1 -1668 5976 5758 7 1523 1729 21 0 0 chr3 123006739 123006930 -36592853 - B2_Mm1a SINE B2 -2 191 1 9 1523 1592 246 118 83 chr3 123006930 123007824 -36591959 - Lx8 LINE L1 -91 5789 4855 7 1523 751 212 26 0 chr3 123008147 123008298 -36591485 + B3A SINE B2 3 157 -41 1 1523 737 189 155 6 chr3 123009879 123010060 -36589723 - B3 SINE B2 -8 208 1 1 1523 315 0 0 0 chr3 123010256 123010291 -36589492 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 1 1523 775 189 5 100 chr3 123010485 123010685 -36589098 + ORR1D1 LTR MaLR 1 181 -193 1 1523 471 142 0 0 chr3 123010685 123010791 -36588992 + (TC)n Simple_repeat Simple_repeat 1 106 0 1 1523 654 197 39 26 chr3 123010791 123010947 -36588836 + ORR1D1 LTR MaLR 174 331 -53 1 1523 483 333 106 47 chr3 123011004 123011448 -36588335 - L1ME2z LINE L1 -341 6103 5634 1 1523 24 0 0 0 chr3 123011642 123011666 -36588117 + AT_rich Low_complexity Low_complexity 1 24 0 1 1523 21 36 0 0 chr3 123011700 123011728 -36588055 + AT_rich Low_complexity Low_complexity 1 28 0 1 1523 291 143 117 0 chr3 123013281 123013358 -36586425 - MIRc SINE MIR -114 154 69 1 1523 320 111 19 0 chr3 123013397 123013451 -36586332 + (TCCC)n Simple_repeat Simple_repeat 3 57 0 1 1523 602 191 55 0 chr3 123013678 123013788 -36585995 - PB1D7 SINE Alu 0 120 5 2 1523 1231 185 0 9 chr3 123013824 123014042 -36585741 + B3 SINE B2 1 216 0 2 1523 1553 47 10 5 chr3 123015169 123015361 -36584422 - B2_Mm2 SINE B2 -2 193 1 2 1523 1004 146 6 0 chr3 123017422 123017600 -36582183 + CT-rich Low_complexity Low_complexity 2 180 0 2 1523 249 139 0 0 chr3 123017600 123017643 -36582140 + (TTC)n Simple_repeat Simple_repeat 3 45 0 2 1523 24 32 0 0 chr3 123017664 123017695 -36582088 + AT_rich Low_complexity Low_complexity 1 31 0 2 1523 1157 184 9 13 chr3 123017701 123017927 -36581856 - RMER1C Other Other -12 1330 1106 2 1523 291 252 47 37 chr3 123017863 123017970 -36581813 - Lx8 LINE L1 -194 7279 7172 2 1523 423 0 0 0 chr3 123018012 123018059 -36581724 + (TC)n Simple_repeat Simple_repeat 2 48 0 2 1523 279 0 0 0 chr3 123018059 123018089 -36581694 + (TG)n Simple_repeat Simple_repeat 2 32 0 2 1523 235 294 0 0 chr3 123018091 123018159 -36581624 - RSINE1 SINE B4 -94 71 4 3 1523 266 330 52 21 chr3 123018973 123019069 -36580714 - L1MC1 LINE L1 -13 6320 6222 3 1523 405 0 0 0 chr3 123019206 123019251 -36580532 + (TG)n Simple_repeat Simple_repeat 2 46 0 3 1523 21 36 0 0 chr3 123019867 123019895 -36579888 + AT_rich Low_complexity Low_complexity 1 28 0 3 1523 353 249 155 67 chr3 123020637 123020824 -36578959 - B3A SINE B2 -13 203 14 3 1523 216 0 0 0 chr3 123020824 123020848 -36578935 + (TC)n Simple_repeat Simple_repeat 1 24 0 3 1523 4059 126 77 22 chr3 123020849 123021563 -36578220 - Lx4A LINE L1 -2 7056 6304 3 1523 6539 117 23 4 chr3 123021563 123022895 -36576888 + Lx4A LINE L1 4921 6285 -773 3 1523 378 129 0 0 chr3 123023930 123023992 -36575791 + (TG)n Simple_repeat Simple_repeat 1 62 0 3 1523 206 159 45 0 chr3 123024020 123024064 -36575719 + G-rich Low_complexity Low_complexity 1 46 0 3 1523 350 205 12 12 chr3 123024065 123024149 -36575634 - Lx9 LINE L1 -340 7304 7221 3 1523 463 209 16 227 chr3 123024189 123024554 -36575229 + Lx9 LINE L1 7352 7639 -5 4 1523 33 0 0 0 chr3 123025089 123025122 -36574661 + AT_rich Low_complexity Low_complexity 1 33 0 4 1523 3516 246 71 63 chr3 123025973 123027207 -36572576 - Lx7 LINE L1 -1 7695 6302 4 1523 336 143 0 0 chr3 123027554 123027610 -36572173 + (CA)n Simple_repeat Simple_repeat 1 56 0 4 1523 200 116 0 65 chr3 123029326 123029372 -36570411 + T-rich Low_complexity Low_complexity 1 43 0 4 1523 21 71 0 0 chr3 123029687 123029729 -36570054 + AT_rich Low_complexity Low_complexity 1 42 0 4 1523 1188 181 24 0 chr3 123029732 123029942 -36569841 - B3 SINE B2 0 216 2 4 1523 475 89 14 5 chr3 123030592 123030676 -36569107 + B1_Mus2 SINE Alu 2 89 -60 4 1523 2222 75 40 6 chr3 123030777 123031098 -36568685 + Lx3A LINE L1 6634 6965 -16 4 1523 408 40 0 0 chr3 123031100 123031150 -36568633 + (TAGA)n Simple_repeat Simple_repeat 1 50 0 4 1523 718 318 27 19 chr3 123031305 123031565 -36568218 + B4 SINE B4 10 271 -21 5 1523 282 143 0 0 chr3 123031620 123031669 -36568114 + (CA)n Simple_repeat Simple_repeat 1 49 0 5 1523 207 0 0 0 chr3 123032163 123032186 -36567597 + (T)n Simple_repeat Simple_repeat 1 23 0 5 1523 395 53 35 0 chr3 123033567 123033624 -36566159 + (TTTG)n Simple_repeat Simple_repeat 1 59 0 5 1523 324 167 238 0 chr3 123033635 123033719 -36566064 - ID_B1 SINE B4 -7 217 114 5 1523 708 45 0 0 chr3 123034016 123034104 -36565679 + (TTCC)n Simple_repeat Simple_repeat 4 91 0 5 1523 215 214 0 0 chr3 123034976 123035018 -36564765 + (TATG)n Simple_repeat Simple_repeat 3 44 0 5 1523 736 12 23 74 chr3 123035228 123035403 -36564380 + (GAGAA)n Simple_repeat Simple_repeat 4 169 0 5 1523 907 174 0 13 chr3 123035821 123035972 -36563811 + B1_Mur2 SINE Alu 1 149 0 5 1523 351 44 0 0 chr3 123036006 123036051 -36563732 + (TG)n Simple_repeat Simple_repeat 1 45 0 5 1523 420 111 0 0 chr3 123036501 123036564 -36563219 + (CA)n Simple_repeat Simple_repeat 1 63 0 6 1523 946 199 9 32 chr3 123036579 123036797 -36562986 - L1_Mur3 LINE L1 -3449 2431 2219 6 1523 225 0 0 0 chr3 123036799 123036824 -36562959 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 6 1523 1182 130 10 5 chr3 123036901 123037094 -36562689 - URR1A DNA MER1_type 0 226 33 6 1523 893 273 71 33 chr3 123037095 123037489 -36562294 - L1_Mur3 LINE L1 -6477 1251 843 6 1523 21 36 0 0 chr3 123037712 123037740 -36562043 + GC_rich Low_complexity Low_complexity 1 28 0 6 1523 369 210 121 95 chr3 123038775 123038891 -36560892 + PB1D7 SINE Alu 1 119 -1 6 1523 243 0 0 0 chr3 123038913 123038940 -36560843 + (TA)n Simple_repeat Simple_repeat 2 28 0 6 1523 210 250 0 0 chr3 123039690 123039742 -36560041 + A-rich Low_complexity Low_complexity 3 54 0 6 1523 456 19 0 0 chr3 123039782 123039835 -36559948 + (TG)n Simple_repeat Simple_repeat 2 54 0 6 1523 25 0 0 0 chr3 123040286 123040311 -36559472 + AT_rich Low_complexity Low_complexity 1 25 0 6 1523 331 331 38 8 chr3 123041773 123041904 -36557879 + B4 SINE B4 158 292 0 7 1523 201 39 0 0 chr3 123042303 123042329 -36557454 + (T)n Simple_repeat Simple_repeat 1 26 0 7 1523 492 62 0 0 chr3 123042527 123042591 -36557192 + (TG)n Simple_repeat Simple_repeat 2 65 0 7 1523 365 267 183 0 chr3 123042833 123042964 -36556819 - MTEa LTR MaLR -42 337 183 7 1523 275 122 20 0 chr3 123042973 123043022 -36556761 + (CCCCCT)n Simple_repeat Simple_repeat 4 53 0 7 1523 695 224 40 43 chr3 123043024 123043204 -36556579 - B3A SINE B2 -15 178 3 7 1523 504 264 68 51 chr3 123043213 123043389 -36556394 - MTEa LTR MaLR -200 179 1 7 1523 465 208 30 6 chr3 123044111 123044280 -36555503 + (CA)n Simple_repeat Simple_repeat 1 173 0 7 1523 6361 36 0 8 chr3 123044306 123045066 -36554717 - L1Md_F2 LINE L1 0 6582 5829 7 1523 230 125 50 0 chr3 123045066 123045106 -36554677 - ID_B1 SINE B4 -7 217 176 7 1523 880 171 7 0 chr3 123045424 123045570 -36554213 + B1_Mur3 SINE Alu 3 149 0 7 1523 198 0 0 0 chr3 123045835 123045857 -36553926 + (CAAAA)n Simple_repeat Simple_repeat 3 24 0 8 1523 480 117 0 0 chr3 123046326 123046403 -36553380 + (GGAAA)n Simple_repeat Simple_repeat 1 77 0 8 1523 21 0 0 0 chr3 123048116 123048137 -36551646 + AT_rich Low_complexity Low_complexity 1 21 0 8 1523 2424 149 60 0 chr3 123048154 123048551 -36551232 - MTC LTR MaLR 0 421 1 8 1523 247 219 52 17 chr3 123049182 123049298 -36550485 + (TA)n Simple_repeat Simple_repeat 1 120 0 8 1523 907 176 134 0 chr3 123049629 123049816 -36549967 + B3 SINE B2 4 215 -1 8 1523 382 293 23 17 chr3 123050459 123050636 -36549147 + (TG)n Simple_repeat Simple_repeat 2 179 0 8 1523 317 321 29 91 chr3 123050641 123050949 -36548834 - B4A SINE B4 -3 289 1 8 1523 285 278 24 94 chr3 123051098 123051225 -36548558 - MIR SINE MIR -140 122 5 8 1523 478 266 105 45 chr3 123051653 123051926 -36547857 - L1MA4 LINE L1 -1499 5974 5703 8 1523 237 224 111 69 chr3 123052001 123052073 -36547710 - RLTR40 LTR ERVK -52 765 691 9 1523 253 285 53 50 chr3 123052587 123052756 -36547027 - L1MA4 LINE L1 -683 5617 5446 8 1523 28 71 0 0 chr3 123053506 123053562 -36546221 + AT_rich Low_complexity Low_complexity 1 56 0 9 1523 209 163 47 0 chr3 123053841 123053884 -36545899 + (TCTCTG)n Simple_repeat Simple_repeat 2 46 0 9 1523 282 281 10 166 chr3 123054049 123054254 -36545529 - B4 SINE B4 -118 174 2 9 1523 210 150 0 0 chr3 123055585 123055625 -36544158 + (TG)n Simple_repeat Simple_repeat 1 40 0 9 1523 889 254 57 0 chr3 123056917 123057161 -36542622 + Lx9 LINE L1 7360 7617 -27 9 1523 256 225 93 70 chr3 123057192 123057278 -36542505 - MLT1B LTR MaLR -295 95 8 9 1523 310 275 0 0 chr3 123059034 123059114 -36540669 - B1F1 SINE Alu -27 122 43 9 1523 881 250 71 0 chr3 123060549 123060745 -36539038 + B3 SINE B2 1 210 -6 9 1523 482 0 17 0 chr3 123061631 123061689 -36538094 + (CA)n Simple_repeat Simple_repeat 2 60 0 9 1523 3610 117 37 7 chr3 123062484 123063029 -36536754 - RLTR31_Mm LTR ERVK 0 561 1 1 1523 443 345 111 24 chr3 123063241 123063654 -36536129 + L2a LINE L2 2919 3367 -59 1 1523 314 196 18 0 chr3 123064131 123064187 -36535596 + B3A SINE B2 2 58 -140 1 1523 303 284 0 0 chr3 123064187 123064268 -36535515 + (CA)n Simple_repeat Simple_repeat 1 81 0 1 1523 258 56 0 0 chr3 123066481 123066517 -36533266 + (CTGGGG)n Simple_repeat Simple_repeat 3 38 0 1 1523 303 222 300 0 chr3 123067427 123067517 -36532266 + B3A SINE B2 2 118 -80 1 1523 684 24 0 0 chr3 123067517 123067599 -36532184 + (CA)n Simple_repeat Simple_repeat 2 83 0 1 1523 4190 95 5 5 chr3 123069519 123070103 -36529680 - L1_Mm LINE L1 -612 5271 4688 1 1523 3941 60 0 2 chr3 123070103 123070568 -36529215 + L1_Mus2 LINE L1 6099 6562 -4 1 1523 891 267 235 8 chr3 123073066 123073834 -36525949 + L1MA5 LINE L1 5346 6288 -12 1 1523 314 255 335 14 chr3 123073839 123074068 -36525715 + L1MC1 LINE L1 6008 6309 -24 1 1523 21 57 0 0 chr3 123075595 123075630 -36524153 + AT_rich Low_complexity Low_complexity 1 35 0 1 1523 2335 151 41 7 chr3 123075674 123076087 -36523696 + Lx LINE L1 6228 6654 0 1 190 242 199 29 64 chr3 123076448 123076620 -36523163 + (TATAA)n Simple_repeat Simple_repeat 4 169 0 1 1524 251 270 0 31 chr3 123077321 123077386 -36522397 + PB1 SINE Alu 13 75 -52 1 1524 29 70 0 0 chr3 123078091 123078148 -36521635 + AT_rich Low_complexity Low_complexity 1 57 0 1 1524 21 0 0 0 chr3 123078239 123078260 -36521523 + AT_rich Low_complexity Low_complexity 1 21 0 1 1524 434 300 12 68 chr3 123078376 123078537 -36521246 - RSINE1 SINE B4 -8 157 6 1 1524 968 224 5 15 chr3 123079348 123079547 -36520236 + B3A SINE B2 1 197 -1 1 1524 22 56 0 0 chr3 123079989 123080025 -36519758 + AT_rich Low_complexity Low_complexity 1 36 0 1 1524 597 253 20 33 chr3 123080139 123080290 -36519493 + B1F SINE Alu 1 149 0 1 1524 341 261 137 62 chr3 123080420 123080610 -36519173 + L1M4 LINE L1 5137 5340 -806 1 1524 1321 34 0 0 chr3 123080610 123080756 -36519027 - B1_Mm SINE Alu 0 147 2 1 1524 341 245 122 13 chr3 123080756 123080851 -36518932 + L1M4 LINE L1 5341 5445 -723 1 1524 1566 281 121 56 chr3 123081038 123081765 -36518018 + Lx9 LINE L1 6523 7296 -348 1 1524 943 190 52 33 chr3 123082005 123082217 -36517566 + B3 SINE B2 1 216 0 1 1524 1175 280 130 51 chr3 123082274 123082960 -36516823 + L1MB8 LINE L1 5423 6162 -16 1 1524 485 196 41 0 chr3 123083690 123083787 -36515996 + B1_Mus2 SINE Alu 6 106 -41 1 1524 257 271 31 0 chr3 123083787 123083823 -36515960 + (TA)n Simple_repeat Simple_repeat 2 38 0 1 1524 234 0 0 0 chr3 123083823 123083849 -36515934 + (CA)n Simple_repeat Simple_repeat 2 27 0 1 1524 257 271 31 0 chr3 123083849 123083908 -36515875 + (TA)n Simple_repeat Simple_repeat 1 61 0 1 1524 597 222 25 38 chr3 123083947 123084106 -36515677 - B3A SINE B2 -2 196 40 1 1524 1164 161 0 0 chr3 123084205 123084391 -36515392 + ORR1A1 LTR MaLR 1 186 -160 1 1524 1618 273 76 67 chr3 123084391 123085023 -36514760 + Lx8 LINE L1 6511 7148 -325 1 1524 239 276 81 54 chr3 123085023 123085134 -36514649 + RMER21B LTR ERV1 616 729 -113 1 1524 228 271 106 0 chr3 123085134 123085219 -36514564 + Lx8 LINE L1 7256 7349 -124 1 1524 327 237 39 13 chr3 123086343 123086420 -36513363 + PB1D10 SINE Alu 28 106 -11 1 1524 657 234 28 82 chr3 123088090 123088272 -36511511 + B3A SINE B2 23 194 -4 1 1524 270 0 0 0 chr3 123088589 123088619 -36511164 + (A)n Simple_repeat Simple_repeat 1 30 0 1 1524 281 219 94 0 chr3 123089267 123089331 -36510452 + PB1D7 SINE Alu 37 106 -14 1 1524 216 0 0 0 chr3 123089349 123089373 -36510410 + (TAAA)n Simple_repeat Simple_repeat 4 27 0 1 1524 300 215 44 207 chr3 123089390 123089468 -36510315 + B1F SINE Alu 37 101 -48 1 1524 264 59 0 0 chr3 123089468 123089502 -36510281 + (TAAA)n Simple_repeat Simple_repeat 4 37 0 1 1524 300 215 44 207 chr3 123089502 123089558 -36510225 + B1F SINE Alu 102 149 0 1 1524 584 162 12 24 chr3 123089600 123089764 -36510019 + (TAAA)n Simple_repeat Simple_repeat 4 165 0 1 1524 180 0 0 0 chr3 123089858 123089878 -36509905 + (TTCA)n Simple_repeat Simple_repeat 4 23 0 1 1524 342 0 0 0 chr3 123089878 123089916 -36509867 + (TAAA)n Simple_repeat Simple_repeat 4 41 0 1 1524 932 147 14 7 chr3 123089978 123090122 -36509661 + B1_Mur4 SINE Alu 4 148 -2 1 1524 190 261 43 0 chr3 123090281 123090327 -36509456 - L2b LINE L2 -19 3356 3309 1 1524 1014 301 85 27 chr3 123091190 123091600 -36508183 - Lx8 LINE L1 -145 7328 6895 1 1524 392 320 16 8 chr3 123091624 123091753 -36508030 + MLT1A1 LTR MaLR 73 202 -206 1 1524 1486 146 266 7 chr3 123091753 123092043 -36507740 + MTC LTR MaLR 3 367 0 1 1524 1640 160 27 57 chr3 123092043 123092127 -36507656 + MTC-int LTR MaLR 1 88 -1421 1 1524 2009 65 27 74 chr3 123092127 123092425 -36507358 + L1_Mus2 LINE L1 6283 6566 0 1 1524 1640 160 27 57 chr3 123092425 123092445 -36507338 + MTC-int LTR MaLR 89 93 -1416 1 1524 729 79 0 0 chr3 123092445 123092546 -36507237 + (GAAA)n Simple_repeat Simple_repeat 1 101 0 1 1524 1640 160 27 57 chr3 123092546 123092772 -36507011 + MTC-int LTR MaLR 94 321 -1188 1 1524 824 113 41 56 chr3 123092757 123092954 -36506829 + MTC-int LTR MaLR 1065 1258 0 1 1524 1990 177 81 20 chr3 123092954 123093351 -36506432 + MTC LTR MaLR 1 421 0 1 1524 364 237 66 32 chr3 123093352 123093500 -36506283 + MLT1A1 LTR MaLR 207 370 -38 1 1524 423 0 0 0 chr3 123093690 123093737 -36506046 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 1524 376 177 96 17 chr3 123093814 123093929 -36505854 - Lx4B LINE L1 -9 7049 6926 1 1524 418 214 48 0 chr3 123093927 123094030 -36505753 - Lx2B LINE L1 -309 6691 6584 1 1524 680 284 98 30 chr3 123095027 123095263 -36504520 - B4A SINE B4 0 292 41 1 1524 2932 296 37 19 chr3 123095263 123096233 -36503550 + Lx8 LINE L1 6480 7467 -6 1 1524 246 32 0 0 chr3 123096392 123096423 -36503360 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1 1524 301 291 68 38 chr3 123096610 123096742 -36503041 + MLT1B LTR MaLR 243 378 -12 1 1524 838 248 19 0 chr3 123097321 123097482 -36502301 + B3 SINE B2 1 164 -52 1 1524 315 49 0 0 chr3 123097483 123097524 -36502259 + (TG)n Simple_repeat Simple_repeat 1 41 0 1 1524 900 281 42 111 chr3 123097525 123097724 -36502059 + ORR1E LTR MaLR 1 202 -157 1 1524 2061 131 36 60 chr3 123097724 123098058 -36501725 + ORR1A3 LTR MaLR 1 326 0 1 1524 900 281 42 111 chr3 123098058 123098235 -36501548 + ORR1E LTR MaLR 203 351 -8 1 1524 281 233 108 14 chr3 123098248 123098322 -36501461 + ORR1E-int LTR MaLR 3 83 -1497 1 1524 637 195 24 0 chr3 123098323 123098404 -36501379 + B1_Mur2 SINE Alu 3 114 -35 1 1524 383 360 18 0 chr3 123098404 123098432 -36501351 + ORR1E-int LTR MaLR 42 69 -1511 1 1524 249 33 0 0 chr3 123098432 123098462 -36501321 + (CAA)n Simple_repeat Simple_repeat 2 31 0 1 1524 637 195 24 0 chr3 123098462 123098475 -36501308 + B1_Mur2 SINE Alu 115 127 -22 1 1524 383 360 18 0 chr3 123098475 123098597 -36501186 + ORR1E-int LTR MaLR 70 207 -1373 1 1524 258 292 0 15 chr3 123098621 123098687 -36501096 + ORR1D2-int LTR MaLR 201 265 -1315 1 1524 645 254 0 7 chr3 123098684 123098823 -36500960 - MTD LTR MaLR -269 150 13 1 1524 735 299 28 18 chr3 123098909 123098952 -36500831 - MTE-int LTR MaLR -510 1070 1032 1 1524 825 66 0 0 chr3 123098952 123099073 -36500710 + (TC)n Simple_repeat Simple_repeat 1 121 0 1 1524 735 299 28 18 chr3 123099073 123099247 -36500536 - MTE-int LTR MaLR -549 1031 852 1 1524 502 250 118 0 chr3 123099808 123099960 -36499823 + MTD LTR MaLR 250 419 0 1 1524 345 328 101 0 chr3 123099960 123100045 -36499738 + ORR1D2-int LTR MaLR 1150 1246 -334 1 1524 372 43 0 0 chr3 123100045 123100091 -36499692 + (TG)n Simple_repeat Simple_repeat 2 47 0 1 1524 569 270 604 0 chr3 123100091 123100281 -36499502 + ORR1D2-int LTR MaLR 1247 1550 -30 1 1524 770 318 44 74 chr3 123100265 123100632 -36499151 + ORR1D2 LTR MaLR 8 363 -7 1 1524 639 301 24 38 chr3 123101538 123101749 -36498034 - B4A SINE B4 -3 289 82 1 1524 835 144 13 0 chr3 123101750 123101903 -36497880 + CT-rich Low_complexity Low_complexity 2 156 0 1 1524 350 295 69 40 chr3 123102271 123102444 -36497339 + ORR1E LTR MaLR 6 183 -176 1 1524 540 250 52 72 chr3 123102442 123102636 -36497147 - MTD-int LTR MaLR -1068 190 1 1 1524 1446 226 128 0 chr3 123102650 123103009 -36496774 - MTD LTR MaLR -14 405 1 1 1524 296 321 76 8 chr3 123103009 123103141 -36496642 - L1MD LINE L1 -455 5787 5647 1 1524 675 296 48 22 chr3 123103157 123103427 -36496356 - L1MD LINE L1 -628 5614 5338 1 1524 848 234 96 5 chr3 123103443 123103641 -36496142 - B3 SINE B2 0 216 1 1 1524 301 270 80 0 chr3 123103716 123103816 -36495967 - MLT1J LTR MaLR -6 506 399 1 1524 201 358 97 35 chr3 123104679 123104905 -36494878 + L2 LINE L2 2822 3061 -358 1 1524 815 173 43 0 chr3 123105276 123105415 -36494368 - B1_Mur4 SINE Alu -5 145 1 1 1524 486 0 0 0 chr3 123105800 123105854 -36493929 + (CA)n Simple_repeat Simple_repeat 1 54 0 1 1524 3545 103 34 26 chr3 123106222 123106722 -36493061 + Lx2 LINE L1 6494 6997 0 1 1524 1495 184 160 3 chr3 123106723 123107055 -36492728 - ORR1B1 LTR MaLR -10 384 1 1 1524 852 204 7 39 chr3 123107117 123107270 -36492513 + B1_Mur1 SINE Alu 2 149 0 1 1524 2227 38 0 0 chr3 123107471 123107732 -36492051 - L1_Mus1 LINE L1 -499 6068 5808 1 1524 739 101 0 56 chr3 123107698 123107824 -36491959 + L1_Mus1 LINE L1 6060 6178 -389 1 1524 721 245 22 88 chr3 123108064 123108292 -36491491 + MTEa LTR MaLR 5 217 -162 1 1524 22 70 0 0 chr3 123109454 123109497 -36490286 + AT_rich Low_complexity Low_complexity 1 43 0 1 1524 1711 177 24 13 chr3 123110142 123110440 -36489343 + ORR1C1 LTR MaLR 78 378 0 1 1524 9167 5 0 0 chr3 123113059 123114472 -36485311 - L1Md_A LINE L1 0 6582 5170 1 1524 229 331 184 0 chr3 123115207 123115370 -36484413 - MIRb SINE MIR -25 243 51 1 1524 314 272 158 45 chr3 123115519 123115765 -36484018 + B4 SINE B4 1 274 -18 1 1524 224 274 96 0 chr3 123117417 123117490 -36482293 - ID4_ SINE ID 0 83 4 1 1524 75 39 0 0 chr3 123117563 123117666 -36482117 + AT_rich Low_complexity Low_complexity 1 103 0 1 1524 1234 161 248 13 chr3 123118255 123118558 -36481225 - ORR1D1 LTR MaLR 0 374 1 1 1524 783 214 106 3 chr3 123118924 123119122 -36480661 - MTD LTR MaLR -19 400 201 1 1524 261 0 0 0 chr3 123119130 123119159 -36480624 + (TG)n Simple_repeat Simple_repeat 2 30 0 1 1524 799 230 64 0 chr3 123119301 123119488 -36480295 - MTD LTR MaLR -209 210 12 1 1524 975 216 50 185 chr3 123119634 123119997 -36479786 + ORR1D2 LTR MaLR 4 317 -53 1 1524 444 121 81 0 chr3 123120122 123120221 -36479562 - Lx2A1 LINE L1 -5 7003 6897 1 1524 219 320 87 29 chr3 123120387 123120490 -36479293 + RSINE1 SINE B4 57 165 0 1 1524 444 301 14 14 chr3 123120943 123121081 -36478702 - ID_B1 SINE B4 0 224 87 1 1524 240 246 18 0 chr3 123122617 123122674 -36477109 + MER96 DNA hAT 14 71 -104 1 1524 4260 33 0 0 chr3 123123445 123123934 -36475849 - L1Md_T LINE L1 -2 6580 6092 2 1524 705 246 78 26 chr3 123123998 123124190 -36475593 - B3 SINE B2 -8 208 7 2 1524 375 339 50 87 chr3 123124403 123124645 -36475138 + B4 SINE B4 49 281 -11 2 1524 702 175 8 0 chr3 123124693 123124819 -36474964 + B1_Mur1 SINE Alu 6 132 -17 2 1524 180 0 0 0 chr3 123125157 123125177 -36474606 + (A)n Simple_repeat Simple_repeat 1 20 0 2 1524 396 0 0 0 chr3 123126313 123126357 -36473426 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 2 1524 1340 199 88 73 chr3 123126390 123126775 -36473008 - MTD LTR MaLR -8 411 21 2 1524 316 233 88 58 chr3 123126849 123126986 -36472797 - B1F SINE Alu -8 141 1 2 1524 998 119 48 0 chr3 123127063 123127095 -36472688 - L1_Mus4 LINE L1 -793 5843 5811 2 1524 4998 69 6 8 chr3 123127095 123127754 -36472029 - L1Md_F2 LINE L1 0 6582 5925 2 1524 1050 44 52 0 chr3 123127754 123127889 -36471894 - L1Md_F2 LINE L1 -773 5809 5668 2 1524 21 0 0 0 chr3 123128016 123128037 -36471746 + AT_rich Low_complexity Low_complexity 1 21 0 2 1524 249 306 94 75 chr3 123128039 123128145 -36471638 + PB1D10 SINE Alu 1 108 -9 2 1524 474 88 0 0 chr3 123128381 123128449 -36471334 + (CA)n Simple_repeat Simple_repeat 2 69 0 2 1524 431 245 129 27 chr3 123128918 123129065 -36470718 - L1MA8 LINE L1 -319 5972 5811 2 1524 247 167 37 0 chr3 123129398 123129452 -36470331 + RMER15 LTR ERVL 407 462 -113 2 1524 1015 65 0 0 chr3 123129690 123129828 -36469955 - B1_Mus1 SINE Alu -2 146 9 2 1524 838 148 163 37 chr3 123129999 123130189 -36469594 - B3 SINE B2 -2 214 1 2 1524 281 355 50 43 chr3 123130382 123130682 -36469101 - L1MC4 LINE L1 -146 7896 7595 2 1524 488 147 25 17 chr3 123130685 123130803 -36468980 + CT-rich Low_complexity Low_complexity 1 119 0 2 1524 246 204 19 0 chr3 123130875 123130929 -36468854 - L1MC4 LINE L1 -355 7527 7473 2 1524 323 267 22 11 chr3 123131122 123131213 -36468570 - ID_B1 SINE B4 -132 92 1 2 1524 295 246 43 0 chr3 123131856 123131925 -36467858 - L1MC4 LINE L1 -1210 6832 6761 2 1524 488 243 28 0 chr3 123131928 123132035 -36467748 + PB1D9 SINE Alu 11 120 0 2 1524 186 71 0 0 chr3 123132035 123132063 -36467720 + (CAAAAA)n Simple_repeat Simple_repeat 2 29 0 2 1524 596 228 0 29 chr3 123132308 123132448 -36467335 + B1_Mur1 SINE Alu 14 149 0 2 1524 23 0 0 0 chr3 123133509 123133532 -36466251 + AT_rich Low_complexity Low_complexity 1 23 0 2 1524 441 0 0 0 chr3 123136326 123136375 -36463408 + (TC)n Simple_repeat Simple_repeat 2 50 0 2 1524 622 265 31 0 chr3 123136675 123136837 -36462946 + B3A SINE B2 8 174 -24 2 1524 378 0 0 0 chr3 123136851 123136893 -36462890 + (CA)n Simple_repeat Simple_repeat 1 42 0 2 1524 192 70 45 23 chr3 123136958 123137002 -36462781 + (TTTG)n Simple_repeat Simple_repeat 4 48 0 2 1524 306 234 150 47 chr3 123137091 123137214 -36462569 - B1_Mur2 SINE Alu -1 148 2 2 1524 192 40 0 0 chr3 123137264 123137289 -36462494 + (GTTTG)n Simple_repeat Simple_repeat 5 29 0 2 1524 328 323 76 15 chr3 123137996 123138128 -36461655 + MTE-int LTR MaLR 939 1078 -502 2 1524 352 273 66 0 chr3 123138112 123138233 -36461550 + MTD LTR MaLR 276 404 -15 2 1524 1347 90 37 11 chr3 123139571 123139761 -36460022 - B2_Mm2 SINE B2 0 195 1 2 1524 288 70 0 0 chr3 123139962 123140005 -36459778 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 2 1524 314 232 0 0 chr3 123140422 123140491 -36459292 + Lx9 LINE L1 7350 7418 -226 2 1524 396 0 0 0 chr3 123140493 123140537 -36459246 + (TG)n Simple_repeat Simple_repeat 2 45 0 2 1524 592 263 7 0 chr3 123140856 123140993 -36458790 - B1F SINE Alu -2 147 10 2 1524 392 319 41 114 chr3 123141056 123141371 -36458412 - B4A SINE B4 0 292 1 2 1524 1163 261 243 22 chr3 123141405 123141899 -36457884 - Lx8 LINE L1 -1 7472 6870 2 1524 633 248 0 0 chr3 123142326 123142451 -36457332 - ID_B1 SINE B4 -7 217 93 2 1524 419 277 34 34 chr3 123142451 123142467 -36457316 - B1_Mus1 SINE Alu -2 141 1 2 1524 853 98 229 0 chr3 123142607 123142760 -36457023 - B2_Mm2 SINE B2 -6 189 2 2 1524 3148 35 0 0 chr3 123142938 123143306 -36456477 + L1Md_T LINE L1 6215 6582 0 2 1524 21 36 0 0 chr3 123145311 123145339 -36454444 + AT_rich Low_complexity Low_complexity 1 28 0 2 1524 266 255 22 7 chr3 123146643 123146781 -36453002 + (TG)n Simple_repeat Simple_repeat 1 140 0 2 1524 548 149 28 28 chr3 123146816 123146995 -36452788 + (TG)n Simple_repeat Simple_repeat 2 180 0 2 1524 213 323 97 30 chr3 123147097 123147231 -36452552 - B4A SINE B4 -59 233 91 2 1524 1156 99 22 0 chr3 123147765 123147934 -36451849 + B2_Mm2 SINE B2 2 173 -22 2 1524 6343 78 77 5 chr3 123147934 123148826 -36450957 + Lx3_Mus LINE L1 6053 7009 0 2 1524 1156 99 22 0 chr3 123148826 123148837 -36450946 + B2_Mm2 SINE B2 174 185 -10 2 1524 22 35 0 0 chr3 123150008 123150037 -36449746 + GC_rich Low_complexity Low_complexity 1 29 0 2 1524 513 0 0 0 chr3 123150834 123150891 -36448892 + (TG)n Simple_repeat Simple_repeat 1 57 0 2 1524 25 0 0 0 chr3 123151878 123151903 -36447880 + AT_rich Low_complexity Low_complexity 1 25 0 2 1524 252 143 0 0 chr3 123152644 123152686 -36447097 + (TG)n Simple_repeat Simple_repeat 1 42 0 2 1524 383 291 21 14 chr3 123152795 123152938 -36446845 - B4A SINE B4 -148 144 1 2 1524 183 80 0 0 chr3 123153402 123153427 -36446356 + (TTTTC)n Simple_repeat Simple_repeat 2 26 0 2 1524 563 308 0 76 chr3 123153764 123153922 -36445861 + RSINE1 SINE B4 3 148 -17 2 1524 635 176 80 7 chr3 123153939 123154076 -36445707 - ORR1C2 LTR MaLR -49 335 189 2 1524 2778 173 83 44 chr3 123154089 123154467 -36445316 - RMER6C LTR ERVK 0 690 325 2 1524 4733 44 2 5 chr3 123154467 123155042 -36444741 - L1Md_F2 LINE L1 0 6582 6010 2 1524 2778 173 83 44 chr3 123155042 123155316 -36444467 - RMER6C LTR ERVK -366 324 13 2 1524 297 0 0 0 chr3 123155316 123155349 -36444434 + (TC)n Simple_repeat Simple_repeat 2 34 0 2 1524 928 98 0 18 chr3 123155350 123155516 -36444267 + (TCTA)n Simple_repeat Simple_repeat 4 166 0 2 1524 1131 117 0 0 chr3 123155517 123155688 -36444095 - ORR1C2 LTR MaLR -213 171 1 2 1524 531 250 70 8 chr3 123156912 123157041 -36442742 + B1F SINE Alu 1 137 -12 2 1524 441 0 0 0 chr3 123157041 123157090 -36442693 + (GA)n Simple_repeat Simple_repeat 2 50 0 2 1524 182 118 29 0 chr3 123157099 123157133 -36442650 + (GAA)n Simple_repeat Simple_repeat 2 36 0 2 1524 371 258 162 16 chr3 123158854 123159039 -36440744 - MLT1C LTR MaLR -246 221 10 2 1524 27 49 0 0 chr3 123159173 123159214 -36440569 + AT_rich Low_complexity Low_complexity 1 41 0 2 1524 705 60 10 0 chr3 123160260 123160360 -36439423 - B1_Mm SINE Alu 0 147 47 2 1524 315 156 62 49 chr3 123160302 123160383 -36439400 - RLTR25B LTR ERVK -519 509 428 2 1524 1259 160 74 7 chr3 123161161 123161432 -36438351 - Lx9 LINE L1 -6 7638 7350 2 1524 180 0 0 0 chr3 123162040 123162060 -36437723 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 2 1524 491 264 24 55 chr3 123162064 123162228 -36437555 - B3 SINE B2 -17 199 41 2 1524 732 33 0 0 chr3 123162238 123162329 -36437454 + (TG)n Simple_repeat Simple_repeat 2 92 0 2 1524 1250 108 43 0 chr3 123162594 123162780 -36437003 + B2_Mm2 SINE B2 1 194 -1 2 1524 833 129 7 0 chr3 123162855 123162994 -36436789 + (TTCTC)n Simple_repeat Simple_repeat 4 143 0 2 1524 1135 95 0 0 chr3 123162994 123163142 -36436641 - B1_Mus1 SINE Alu 0 148 1 2 1524 454 310 28 42 chr3 123163694 123163906 -36435877 + B3 SINE B2 2 210 -6 2 1524 1016 251 64 70 chr3 123164653 123164736 -36435047 - ORR1E LTR MaLR -14 345 259 2 1524 4104 65 16 0 chr3 123164736 123165247 -36434536 - MURVY-LTR LTR ERV1 0 519 1 2 1524 1016 251 64 70 chr3 123165247 123165506 -36434277 - ORR1E LTR MaLR -101 258 5 2 1524 744 71 0 0 chr3 123165845 123165944 -36433839 + (CAAAA)n Simple_repeat Simple_repeat 2 100 0 2 1524 478 299 0 0 chr3 123166746 123166873 -36432910 - B1F2 SINE Alu 0 149 23 2 1524 957 145 0 7 chr3 123169594 123169740 -36430043 - B1_Mus1 SINE Alu -2 146 2 2 1524 3357 277 60 34 chr3 123169768 123170931 -36428852 - Lx9 LINE L1 0 7644 6452 2 1524 3408 43 2 0 chr3 123171341 123171736 -36428047 + MTA_Mm LTR MaLR 1 396 0 2 1524 381 259 8 43 chr3 123171972 123172089 -36427694 - ID_B1 SINE B4 -2 222 110 2 1524 339 253 105 40 chr3 123173527 123173679 -36426104 + MIR SINE MIR 67 228 -34 2 1524 215 244 0 0 chr3 123174363 123174408 -36425375 + (TATATG)n Simple_repeat Simple_repeat 3 47 0 2 1524 23 0 0 0 chr3 123174534 123174557 -36425226 + AT_rich Low_complexity Low_complexity 1 23 0 2 1524 3058 17 42 3 chr3 123174679 123175032 -36424751 - IAPLTR1_Mm LTR ERVK 0 367 1 2 1524 9579 24 2 6 chr3 123175032 123176118 -36423665 - IAPEz-int LTR ERVK 0 6481 5400 2 1524 21469 36 38 15 chr3 123176093 123178699 -36421084 - IAPEz-int LTR ERVK -3807 2674 8 2 1524 3058 17 42 3 chr3 123178699 123179052 -36420731 - IAPLTR1_Mm LTR ERVK 0 367 1 2 1524 200 79 0 50 chr3 123179722 123179762 -36420021 + (TCTCTG)n Simple_repeat Simple_repeat 4 41 0 2 1524 414 0 0 0 chr3 123179763 123179809 -36419974 + (CA)n Simple_repeat Simple_repeat 2 47 0 2 1524 496 296 8 0 chr3 123180216 123180348 -36419435 + B1F SINE Alu 11 143 -6 2 1524 348 217 122 0 chr3 123180477 123180592 -36419191 + L1MB3 LINE L1 6032 6160 -23 2 1524 818 188 0 6 chr3 123182273 123182444 -36417339 + CT-rich Low_complexity Low_complexity 4 173 0 2 1524 428 175 8 32 chr3 123182829 123182953 -36416830 + (CCTA)n Simple_repeat Simple_repeat 4 124 0 2 1524 241 26 53 0 chr3 123184878 123184916 -36414867 + (CAAAAA)n Simple_repeat Simple_repeat 2 41 0 2 1524 351 0 0 0 chr3 123186111 123186150 -36413633 + (CA)n Simple_repeat Simple_repeat 2 40 0 2 1524 704 249 69 10 chr3 123186204 123186407 -36413376 + B3 SINE B2 2 216 0 2 1524 238 226 109 73 chr3 123187428 123187538 -36412245 - MLT1B LTR MaLR -125 265 152 2 1524 282 56 0 0 chr3 123187650 123187686 -36412097 + (TCTG)n Simple_repeat Simple_repeat 3 38 0 2 1524 564 15 0 0 chr3 123188027 123188092 -36411691 + (TCCA)n Simple_repeat Simple_repeat 4 68 0 2 1524 412 262 58 58 chr3 123190416 123190554 -36409229 - B1F SINE Alu -8 141 4 2 1524 750 217 194 0 chr3 123190938 123191118 -36408665 + B3 SINE B2 2 216 0 3 1524 318 152 0 0 chr3 123191121 123191180 -36408603 + (TA)n Simple_repeat Simple_repeat 2 60 0 3 1524 230 204 19 0 chr3 123192045 123192099 -36407684 + (TA)n Simple_repeat Simple_repeat 1 55 0 3 1524 29 0 0 0 chr3 123192119 123192148 -36407635 + AT_rich Low_complexity Low_complexity 1 29 0 3 1524 706 197 50 25 chr3 123192886 123193047 -36406736 + RSINE1 SINE B4 1 165 0 3 1524 227 116 0 44 chr3 123193049 123193094 -36406689 + (CACG)n Simple_repeat Simple_repeat 1 43 0 3 1524 997 153 96 69 chr3 123193352 123193570 -36406213 + URR1B DNA MER1_type 1 224 -1 3 1524 1020 95 144 11 chr3 123193762 123193943 -36405840 - Lx3_Mus LINE L1 -1 7008 6804 3 1524 906 70 0 0 chr3 123193943 123194058 -36405725 - Lx3_Mus LINE L1 -298 6711 6597 3 1524 2827 133 11 20 chr3 123194716 123195170 -36404613 - RLTR11B LTR ERVK -1 452 3 3 1524 304 237 43 7 chr3 123195283 123195382 -36404401 + PB1D7 SINE Alu 41 137 -10 3 1524 1893 68 11 70 chr3 123195545 123195831 -36403952 + L1Md_F2 LINE L1 6314 6582 0 3 1524 243 0 0 0 chr3 123196553 123196580 -36403203 + (TTG)n Simple_repeat Simple_repeat 1 27 0 3 1524 674 252 0 20 chr3 123196720 123196870 -36402913 + B1_Mur1 SINE Alu 3 149 0 3 1524 1083 108 0 13 chr3 123197356 123197506 -36402277 + B1_Mur4 SINE Alu 2 149 -1 3 1524 181 322 206 0 chr3 123197927 123198073 -36401710 + L3 LINE CR1 3511 3686 -803 3 1524 216 317 0 0 chr3 123198572 123198632 -36401151 + (TG)n Simple_repeat Simple_repeat 1 60 0 3 1524 338 273 129 158 chr3 123198638 123198725 -36401058 - B4A SINE B4 -6 286 231 3 1524 719 243 97 0 chr3 123198725 123198910 -36400873 - B3 SINE B2 -12 204 2 3 1524 338 273 129 158 chr3 123198910 123199031 -36400752 - B4A SINE B4 -62 230 84 3 1524 778 237 52 56 chr3 123199115 123199347 -36400436 - MTE2a LTR MaLR 0 379 149 3 1524 276 200 0 0 chr3 123199380 123199430 -36400353 - MTE2a LTR MaLR -325 54 5 3 1524 28 0 0 0 chr3 123199447 123199475 -36400308 + AT_rich Low_complexity Low_complexity 1 28 0 3 1524 1072 108 0 0 chr3 123199490 123199638 -36400145 - B1_Mus1 SINE Alu 0 148 1 3 1524 752 32 11 0 chr3 123199789 123199884 -36399899 + (TC)n Simple_repeat Simple_repeat 2 97 0 3 1524 3102 172 40 26 chr3 123199885 123200535 -36399248 - Lx4A LINE L1 -8 7050 6392 3 1524 2123 183 32 48 chr3 123200535 123200977 -36398806 + Lx5 LINE L1 5910 6344 -706 3 1524 1927 164 36 25 chr3 123200987 123201349 -36398434 + RLTR30 LTR ERV1 13 378 -1 3 1524 300 159 216 0 chr3 123203125 123203213 -36396570 - B1_Mur1 SINE Alu -37 112 6 3 1524 393 266 109 67 chr3 123204558 123204723 -36395060 + B4 SINE B4 4 175 -117 3 1524 797 80 33 2 chr3 123204773 123204914 -36394869 + ORR1B1 LTR MaLR 5 159 -215 3 1524 673 244 21 26 chr3 123204914 123204974 -36394809 + L1_Mur1 LINE L1 5435 5526 -765 3 1524 1534 58 16 0 chr3 123204974 123205165 -36394618 + B2_Mm2 SINE B2 2 195 0 3 1524 673 229 6 25 chr3 123205165 123205281 -36394502 + L1_Mur1 LINE L1 5527 5641 -650 3 1524 465 19 0 0 chr3 123205281 123205335 -36394448 + (TA)n Simple_repeat Simple_repeat 2 55 0 3 1524 668 241 6 33 chr3 123205335 123205360 -36394423 + L1_Mur1 LINE L1 5642 5664 -639 3 1524 3328 21 39 0 chr3 123205442 123205823 -36393960 + MTA_Mm LTR MaLR 1 396 0 3 1524 454 139 51 0 chr3 123206173 123206252 -36393531 - B1_Mur2 SINE Alu 0 149 67 3 1524 23 68 0 0 chr3 123206296 123206340 -36393443 + AT_rich Low_complexity Low_complexity 1 44 0 3 1524 479 207 33 41 chr3 123206773 123206894 -36392889 - Lx5 LINE L1 -1 7049 6930 3 1524 273 306 0 75 chr3 123207039 123207159 -36392624 + PB1D7 SINE Alu 7 117 -3 3 1524 587 224 125 5 chr3 123207166 123207390 -36392393 + RCHARR1 DNA MER1_type 653 903 -71 3 1525 774 125 146 0 chr3 123208582 123208726 -36391057 + URR1B DNA MER1_type 59 223 -2 3 1525 26 50 0 0 chr3 123210488 123210528 -36389255 + AT_rich Low_complexity Low_complexity 1 40 0 3 1525 381 266 26 0 chr3 123213960 123214073 -36385710 + ID_B1 SINE B4 2 117 -107 3 1525 304 319 118 0 chr3 123214419 123214554 -36385229 + ID_B1 SINE B4 66 216 -8 3 1525 21 36 0 0 chr3 123214558 123214586 -36385197 + AT_rich Low_complexity Low_complexity 1 28 0 3 1525 386 256 12 0 chr3 123214598 123214680 -36385103 + ID4_ SINE ID 1 83 0 3 1525 898 86 0 0 chr3 123214804 123214932 -36384851 + B2_Mm2 SINE B2 2 129 -66 3 1525 212 86 29 0 chr3 123214949 123214984 -36384799 + (GAAAA)n Simple_repeat Simple_repeat 2 37 0 3 1525 1235 196 55 76 chr3 123214986 123215458 -36384325 - MTD LTR MaLR -2 419 1 3 1525 207 100 0 0 chr3 123216023 123216053 -36383730 + (T)n Simple_repeat Simple_repeat 1 30 0 3 1525 201 304 170 16 chr3 123217016 123217210 -36382573 - L2 LINE L2 -1218 2201 1978 3 1525 927 118 11 34 chr3 123217462 123217637 -36382146 + URR1A DNA MER1_type 55 225 -1 3 1525 383 157 0 25 chr3 123218963 123219081 -36380702 + A-rich Low_complexity Low_complexity 3 117 0 3 1525 715 241 6 44 chr3 123219122 123219304 -36380479 - B3A SINE B2 -5 193 19 3 1525 703 271 69 77 chr3 123219306 123219742 -36380041 - MT2B LTR ERVL -64 537 1 3 1525 510 17 0 0 chr3 123220309 123220368 -36379415 + (TC)n Simple_repeat Simple_repeat 2 60 0 3 1525 3275 42 22 0 chr3 123220372 123220775 -36379008 + L1Md_T LINE L1 6171 6582 0 3 1525 632 258 28 79 chr3 123220775 123220990 -36378793 - ID_B1 SINE B4 -13 211 8 3 1525 324 274 44 69 chr3 123221456 123221621 -36378162 + B3A SINE B2 1 159 -57 3 1525 369 75 0 0 chr3 123221625 123221678 -36378105 + (CA)n Simple_repeat Simple_repeat 1 53 0 3 1525 946 282 100 44 chr3 123222259 123222600 -36377183 + MTEa LTR MaLR 18 377 -2 3 1525 455 269 147 11 chr3 123224132 123224309 -36375474 - B3 SINE B2 -14 202 2 3 1525 2364 177 99 24 chr3 123225015 123225422 -36374361 + RLTR20A LTR ERVK 1 439 -102 3 1525 210 37 0 0 chr3 123225422 123225449 -36374334 + (TG)n Simple_repeat Simple_repeat 1 27 0 3 1525 2364 177 99 24 chr3 123225449 123225544 -36374239 + RLTR20A LTR ERVK 440 540 -1 3 1525 349 290 65 0 chr3 123225820 123225944 -36373839 + MLT2B2 LTR ERVL 4 135 -380 3 1525 239 93 23 0 chr3 123226098 123226141 -36373642 + (TG)n Simple_repeat Simple_repeat 1 44 0 3 1525 885 304 105 4 chr3 123226141 123226379 -36373404 - B4A SINE B4 -25 267 6 3 1525 1221 248 109 70 chr3 123226557 123227017 -36372766 - RMER5 LTR ERV1 -5 529 52 3 1525 453 256 30 15 chr3 123227627 123227762 -36372021 - ORR1D2 LTR MaLR 0 370 234 3 1525 366 23 0 0 chr3 123228298 123228341 -36371442 + (CA)n Simple_repeat Simple_repeat 1 43 0 3 1525 189 0 0 0 chr3 123228784 123228805 -36370978 + (TG)n Simple_repeat Simple_repeat 2 22 0 3 1525 744 208 250 0 chr3 123230723 123230891 -36368892 - B3 SINE B2 -6 210 1 3 1525 215 325 26 0 chr3 123233338 123233415 -36366368 - RSINE1 SINE B4 -7 158 80 3 1525 180 135 0 0 chr3 123233475 123233512 -36366271 + (TTTA)n Simple_repeat Simple_repeat 4 40 0 3 1525 435 38 0 0 chr3 123233905 123233958 -36365825 + (TTA)n Simple_repeat Simple_repeat 2 54 0 3 1525 700 239 0 0 chr3 123234663 123234793 -36364990 + B1F2 SINE Alu 2 131 -18 3 1525 342 0 0 0 chr3 123234795 123234833 -36364950 + (TC)n Simple_repeat Simple_repeat 1 38 0 3 1525 360 0 0 0 chr3 123234833 123234872 -36364911 + (CA)n Simple_repeat Simple_repeat 1 40 0 3 1525 279 0 0 0 chr3 123234872 123234902 -36364881 + (GA)n Simple_repeat Simple_repeat 2 32 0 3 1525 2117 159 10 60 chr3 123235417 123235831 -36363952 + MTB_Mm LTR MaLR 1 393 -14 3 1525 230 284 72 95 chr3 123235834 123236181 -36363602 + L1M4 LINE L1 4481 4819 -1327 3 1525 398 306 148 67 chr3 123236333 123236596 -36363187 + L1M4 LINE L1 4795 5053 -1093 3 1525 1061 244 4 31 chr3 123236596 123236824 -36362959 - ID_B1 SINE B4 0 224 3 3 1525 2224 82 68 7 chr3 123236827 123237033 -36362750 + L1_Mus3 LINE L1 6311 6537 -101 3 1525 180 111 0 0 chr3 123237033 123237060 -36362723 + (TGAG)n Simple_repeat Simple_repeat 2 28 0 3 1525 2224 82 68 7 chr3 123237060 123237161 -36362622 + L1_Mus3 LINE L1 6538 6637 -1 3 1525 398 306 148 67 chr3 123237161 123237338 -36362445 + L1M4 LINE L1 5054 5275 -871 3 1525 255 284 25 0 chr3 123237474 123237555 -36362228 + (TA)n Simple_repeat Simple_repeat 1 83 0 3 1525 867 155 0 0 chr3 123237566 123237708 -36362075 - B1_Mus1 SINE Alu 0 148 7 3 1525 405 226 8 102 chr3 123237600 123237728 -36362055 - MT2B LTR ERVL -336 265 150 3 1525 345 174 0 0 chr3 123237901 123237970 -36361813 + (TA)n Simple_repeat Simple_repeat 2 70 0 3 1525 315 49 0 0 chr3 123238822 123238863 -36360920 + (CA)n Simple_repeat Simple_repeat 2 42 0 3 1525 441 95 0 0 chr3 123239039 123239102 -36360681 + (CTA)n Simple_repeat Simple_repeat 3 65 0 3 1525 461 307 9 0 chr3 123239102 123239216 -36360567 - B1F SINE Alu -17 132 18 3 1525 450 302 87 39 chr3 123239242 123239583 -36360200 - L1M4 LINE L1 -528 5816 5463 3 1525 306 50 0 0 chr3 123239777 123239817 -36359966 + (CAAG)n Simple_repeat Simple_repeat 2 41 0 3 1525 315 0 0 0 chr3 123239984 123240019 -36359764 + (TA)n Simple_repeat Simple_repeat 2 36 0 3 1525 500 262 98 14 chr3 123240025 123240168 -36359615 - RSINE1 SINE B4 -8 157 3 3 1525 5640 232 62 61 chr3 123240405 123242810 -36356973 + Lx7 LINE L1 5287 7696 0 3 1525 10462 54 0 2 chr3 123243824 123245103 -36354680 + L1Md_F2 LINE L1 4310 5586 -297 3 1525 8863 33 3 1 chr3 123245103 123246097 -36353686 + L1Md_F2 LINE L1 5587 6582 0 3 1525 32 0 0 0 chr3 123247906 123247938 -36351845 + AT_rich Low_complexity Low_complexity 1 32 0 3 1525 1120 82 0 0 chr3 123247938 123248085 -36351698 - B1_Mus1 SINE Alu 0 148 2 3 1525 562 251 45 101 chr3 123248085 123248140 -36351643 - B4 SINE B4 -213 79 36 3 1525 1441 60 50 0 chr3 123248410 123248592 -36351191 + B2_Mm2 SINE B2 2 192 -3 3 1525 200 153 16 48 chr3 123248665 123248727 -36351056 + (CAAAC)n Simple_repeat Simple_repeat 3 62 0 3 1525 2498 132 38 12 chr3 123248981 123249381 -36350402 - MTC LTR MaLR -8 413 4 3 1525 305 245 83 28 chr3 123250145 123250254 -36349529 + PB1D10 SINE Alu 1 115 -2 4 1525 811 214 0 14 chr3 123250448 123250595 -36349188 + B1_Mus1 SINE Alu 3 147 -1 4 1525 936 242 0 15 chr3 123250618 123250819 -36348964 + B3A SINE B2 1 198 0 4 1525 537 219 9 9 chr3 123250846 123250952 -36348831 + PB1D7 SINE Alu 14 119 -1 4 1525 243 0 0 0 chr3 123252819 123252846 -36346937 + (TC)n Simple_repeat Simple_repeat 2 28 0 4 1525 876 214 29 81 chr3 123253227 123253436 -36346347 + B3A SINE B2 1 198 0 4 1525 758 194 21 7 chr3 123254031 123254171 -36345612 + ID_B1 SINE B4 82 223 -1 4 1525 250 303 144 11 chr3 123254538 123254628 -36345155 + MER58B DNA MER1_type 190 291 -50 4 1525 821 276 50 8 chr3 123254930 123255171 -36344612 + B4 SINE B4 1 251 -41 4 1525 778 69 38 0 chr3 123255183 123255314 -36344469 + (TC)n Simple_repeat Simple_repeat 2 137 0 4 1525 1537 70 16 0 chr3 123256338 123256525 -36343258 - B2_Mm1t SINE B2 -3 190 1 4 1525 22 0 0 0 chr3 123257488 123257510 -36342273 + AT_rich Low_complexity Low_complexity 1 22 0 4 1525 384 200 0 0 chr3 123257616 123257696 -36342087 + (TG)n Simple_repeat Simple_repeat 1 80 0 4 1525 373 299 45 45 chr3 123257708 123257862 -36341921 - B4A SINE B4 -12 280 127 4 1525 386 197 26 0 chr3 123258578 123258654 -36341129 - ID4_ SINE ID -4 79 2 4 1525 23 68 0 0 chr3 123259243 123259287 -36340496 + AT_rich Low_complexity Low_complexity 1 44 0 4 1525 885 264 104 10 chr3 123260221 123260520 -36339263 + Lx6 LINE L1 7133 7459 -1 4 1525 219 292 71 30 chr3 123261449 123261548 -36338235 - MER5A DNA MER1_type 0 189 87 4 1525 22 0 0 0 chr3 123262665 123262687 -36337096 + AT_rich Low_complexity Low_complexity 1 22 0 4 1525 23 0 0 0 chr3 123263086 123263109 -36336674 + AT_rich Low_complexity Low_complexity 1 23 0 4 1525 1043 141 214 11 chr3 123263532 123263719 -36336064 + URR1B DNA MER1_type 1 225 0 4 1525 375 78 0 0 chr3 123264432 123264483 -36335300 + (TG)n Simple_repeat Simple_repeat 2 52 0 4 1525 4853 19 0 0 chr3 123265311 123265833 -36333950 + L1Md_A LINE L1 6061 6582 0 4 1525 795 21 0 0 chr3 123266683 123266776 -36333007 + (TC)n Simple_repeat Simple_repeat 2 94 0 4 1525 3058 167 30 49 chr3 123266796 123267363 -36332420 - Lx5 LINE L1 -3 7047 6492 4 1525 324 261 141 0 chr3 123267590 123267682 -36332101 - PB1D10 SINE Alu -1 116 12 4 1525 659 306 30 71 chr3 123267769 123268036 -36331747 - B4 SINE B4 -2 290 35 4 1525 1330 247 77 6 chr3 123268439 123268765 -36331018 - MTD LTR MaLR -53 366 18 4 1525 405 0 0 0 chr3 123268766 123268811 -36330972 + (CAAAA)n Simple_repeat Simple_repeat 3 47 0 4 1525 3491 240 79 21 chr3 123269230 123270124 -36329659 + Lx9 LINE L1 6483 7428 -216 4 1525 434 307 63 48 chr3 123271060 123271330 -36328453 - B4A SINE B4 -18 274 1 4 1525 565 179 21 0 chr3 123271531 123271626 -36328157 - LSU-rRNA_Hsa rRNA rRNA -358 4677 4581 4 1525 235 282 0 37 chr3 123271627 123271708 -36328075 - MER33 DNA MER1_type -191 133 56 4 1525 262 228 18 0 chr3 123272125 123272182 -36327601 + Lx8 LINE L1 6480 6537 -936 4 1525 6637 37 11 7 chr3 123272434 123273191 -36326592 - L1Md_F2 LINE L1 -1 6581 5822 4 1525 11381 57 8 0 chr3 123273191 123274588 -36325195 + L1Md_F2 LINE L1 4441 5848 -35 4 1525 23 0 0 0 chr3 123275403 123275426 -36324357 + AT_rich Low_complexity Low_complexity 1 23 0 4 1525 428 249 259 39 chr3 123275723 123276087 -36323696 - L1M2 LINE L1 -556 5612 5165 4 1525 1250 308 34 8 chr3 123276375 123276761 -36323022 - Lx6 LINE L1 -19 7441 7046 4 1525 2086 138 135 0 chr3 123277017 123277350 -36322433 + ORR1C1 LTR MaLR 1 378 0 4 1525 1344 80 0 0 chr3 123277785 123278025 -36321758 + (CCA)n Simple_repeat Simple_repeat 1 240 0 4 1525 639 0 0 0 chr3 123278319 123278390 -36321393 + (TC)n Simple_repeat Simple_repeat 1 71 0 4 1525 387 0 0 0 chr3 123278390 123278432 -36321351 + (CA)n Simple_repeat Simple_repeat 1 43 0 4 1525 518 167 244 9 chr3 123278910 123279025 -36320758 - MTC LTR MaLR -3 418 277 4 1525 446 97 28 0 chr3 123279025 123279097 -36320686 + (TCTCC)n Simple_repeat Simple_repeat 3 76 0 4 1525 552 231 0 95 chr3 123279097 123279245 -36320538 - B1_Mur2 SINE Alu -5 144 11 4 1525 9840 106 16 23 chr3 123280260 123280614 -36319169 + Lx4A LINE L1 5311 5678 -1380 4 1525 1067 134 6 0 chr3 123280614 123280793 -36318990 + (TC)n Simple_repeat Simple_repeat 1 180 0 4 1525 558 0 0 0 chr3 123280793 123280855 -36318928 + (TTTC)n Simple_repeat Simple_repeat 3 64 0 4 1525 1105 37 0 99 chr3 123280855 123281006 -36318777 - B1_Mm SINE Alu -11 136 1 4 1525 9840 107 36 11 chr3 123281006 123282351 -36317432 + Lx4A LINE L1 5679 7056 -2 4 1525 622 210 48 8 chr3 123282368 123282493 -36317290 + B1_Mur2 SINE Alu 1 130 -19 4 1525 414 0 0 0 chr3 123282501 123282547 -36317236 + (CTCA)n Simple_repeat Simple_repeat 1 46 0 4 1525 3467 43 0 0 chr3 123283325 123283718 -36316065 - L1Md_T LINE L1 -1 6581 6189 4 1525 2242 154 80 3 chr3 123284051 123284416 -36315367 - ORR1B1 LTR MaLR 0 394 2 4 1525 348 83 0 0 chr3 123284803 123284851 -36314932 + (TA)n Simple_repeat Simple_repeat 2 49 0 4 1525 3520 108 29 8 chr3 123285487 123286007 -36313776 + Lx2 LINE L1 6466 6996 -1 4 1525 622 286 12 0 chr3 123287474 123287635 -36312148 - B3A SINE B2 -35 163 1 4 1525 2085 274 92 46 chr3 123288069 123288850 -36310933 + L1_Mur3 LINE L1 944 1741 -4139 4 1525 324 0 0 0 chr3 123288850 123288886 -36310897 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 4 1525 2085 261 94 56 chr3 123288886 123289450 -36310333 + L1_Mur3 LINE L1 1742 2338 -3542 4 1525 563 225 75 0 chr3 123289504 123289624 -36310159 - B3 SINE B2 -86 130 2 4 1525 808 245 15 25 chr3 123289626 123289827 -36309956 + L1_Mur3 LINE L1 2325 2523 -3357 4 1525 504 239 97 0 chr3 123289823 123289957 -36309826 + L1_Mur3 LINE L1 5193 5339 -541 4 1525 3269 57 3 0 chr3 123289978 123290364 -36309419 - L1_Mus2 LINE L1 -1 6565 6179 4 1525 348 296 12 0 chr3 123290387 123290468 -36309315 - B1_Mur2 SINE Alu -2 147 66 4 1525 243 236 18 0 chr3 123290468 123290523 -36309260 - L1_Mur3 LINE L1 -454 5426 5371 4 1525 253 265 0 0 chr3 123290552 123290601 -36309182 + B1_Mus2 SINE Alu 1 49 -98 4 1525 225 296 28 14 chr3 123290601 123290624 -36309159 + ID_B1 SINE B4 82 154 -70 4 1525 400 184 175 50 chr3 123290639 123290759 -36309024 + L1_Mur3 LINE L1 5473 5607 -273 4 1525 660 26 0 0 chr3 123290759 123290837 -36308946 + (CA)n Simple_repeat Simple_repeat 2 79 0 4 1525 396 0 0 0 chr3 123290858 123290902 -36308881 + (TC)n Simple_repeat Simple_repeat 1 44 0 4 1525 421 263 86 15 chr3 123290924 123291217 -36308566 - L1M4c LINE L1 -3871 2505 2194 4 1525 1146 321 92 56 chr3 123291688 123292184 -36307599 + MER44C DNA MER2_type 1 514 -219 4 1525 1801 59 4 82 chr3 123292184 123292441 -36307342 - L1_Mus2 LINE L1 -1 6565 6329 4 1525 1146 321 92 56 chr3 123292441 123292643 -36307140 + MER44C DNA MER2_type 515 724 -9 4 1525 247 257 55 35 chr3 123292667 123292812 -36306971 - L1M4c LINE L1 -4767 1536 1439 4 1525 299 315 0 11 chr3 123293161 123293251 -36306532 - B4A SINE B4 -2 290 202 4 1525 1824 198 22 115 chr3 123293263 123293725 -36306058 + RLTR25B LTR ERVK 43 461 -567 4 1525 22 0 0 0 chr3 123293743 123293765 -36306018 + AT_rich Low_complexity Low_complexity 1 22 0 4 1525 25 31 0 0 chr3 123294967 123294999 -36304784 + AT_rich Low_complexity Low_complexity 1 32 0 4 1525 324 0 0 0 chr3 123296544 123296580 -36303203 + (CA)n Simple_repeat Simple_repeat 1 36 0 4 1525 1393 64 14 42 chr3 123297963 123298175 -36301608 + L1_Mus3 LINE L1 6433 6638 0 4 1525 868 202 158 32 chr3 123298573 123298819 -36300964 + MTD LTR MaLR 107 383 -36 4 1525 310 265 0 176 chr3 123298835 123298954 -36300829 + MTC-int LTR MaLR 11 122 -1458 4 1525 980 284 115 28 chr3 123298960 123299430 -36300353 + MTC-int LTR MaLR 727 1237 -21 4 1525 291 122 0 0 chr3 123299489 123299538 -36300245 + (TG)n Simple_repeat Simple_repeat 2 50 0 4 1525 806 289 5 10 chr3 123299546 123299749 -36300034 + B3 SINE B2 13 214 -2 4 1525 762 181 21 14 chr3 123301521 123301661 -36298122 + B1_Mur1 SINE Alu 1 141 -8 4 1525 9977 89 18 2 chr3 123301662 123303228 -36296555 + Lx3_Mus LINE L1 5407 7001 -8 4 1525 427 264 35 12 chr3 123303970 123304139 -36295644 + GA-rich Low_complexity Low_complexity 1 173 0 4 1525 219 204 0 0 chr3 123304171 123304220 -36295563 + GA-rich Low_complexity Low_complexity 1 49 0 4 1525 474 65 0 0 chr3 123305879 123305941 -36293842 + (TG)n Simple_repeat Simple_repeat 2 63 0 4 1525 22 35 0 0 chr3 123305994 123306023 -36293760 + AT_rich Low_complexity Low_complexity 1 29 0 4 1525 22 0 0 0 chr3 123306261 123306283 -36293500 + AT_rich Low_complexity Low_complexity 1 22 0 4 1525 1601 136 70 202 chr3 123306575 123307016 -36292767 + RLTR9A2 LTR ERVK 1 383 0 4 1525 405 0 0 0 chr3 123307149 123307194 -36292589 + (TG)n Simple_repeat Simple_repeat 1 45 0 4 1525 231 103 0 0 chr3 123307865 123307904 -36291879 + (T)n Simple_repeat Simple_repeat 1 39 0 4 1525 1537 45 29 29 chr3 123307904 123308112 -36291671 + L1Md_F3 LINE L1 6377 6584 0 4 1525 411 260 0 55 chr3 123310011 123310121 -36289662 - PB1D9 SINE Alu -16 104 1 4 1525 21 0 0 0 chr3 123310215 123310236 -36289547 + AT_rich Low_complexity Low_complexity 1 21 0 4 1525 699 12 0 0 chr3 123310763 123310843 -36288940 + (CA)n Simple_repeat Simple_repeat 1 80 0 4 1525 769 248 7 0 chr3 123313260 123313401 -36286382 - B1_Mur3 SINE Alu -7 142 1 4 1525 525 257 269 0 chr3 123313428 123313611 -36286172 + Lx7 LINE L1 6555 6786 -910 4 1525 243 188 0 0 chr3 123314851 123314899 -36284884 + (CATATA)n Simple_repeat Simple_repeat 1 48 0 4 1525 333 272 0 24 chr3 123315392 123315475 -36284308 + PB1D10 SINE Alu 1 81 -36 4 1525 262 192 55 0 chr3 123316925 123316998 -36282785 + Lx9 LINE L1 7568 7644 0 4 1525 1249 75 0 0 chr3 123317247 123317394 -36282389 - B1_Mus2 SINE Alu 0 147 1 4 1525 219 367 22 0 chr3 123318450 123318540 -36281243 + MIRb SINE MIR 31 122 -146 4 1525 488 309 107 23 chr3 123318919 123319181 -36280602 + B4A SINE B4 3 286 -6 4 1525 523 251 6 11 chr3 123319196 123319377 -36280406 + (CA)n Simple_repeat Simple_repeat 1 180 0 5 1525 321 310 252 29 chr3 123319579 123319825 -36279958 + RMER15 LTR ERVL 275 575 0 5 1525 572 279 50 52 chr3 123320430 123320767 -36279016 - Lx8 LINE L1 -1592 6052 5713 5 1525 1900 303 116 7 chr3 123320765 123321437 -36278346 + Lx8 LINE L1 6530 7274 -199 5 1525 501 58 0 0 chr3 123321480 123321549 -36278234 + (CA)n Simple_repeat Simple_repeat 2 70 0 5 1525 2015 107 3 14 chr3 123321693 123321986 -36277797 + Lx2A1 LINE L1 6719 7008 0 5 1525 1251 104 37 32 chr3 123322988 123323177 -36276606 + B2_Mm2 SINE B2 1 190 -5 5 1525 293 299 75 0 chr3 123323946 123324053 -36275730 + MER74B LTR ERVL 454 568 -54 5 1525 35 54 0 0 chr3 123324897 123324953 -36274830 + AT_rich Low_complexity Low_complexity 1 56 0 5 1525 608 216 0 137 chr3 123325180 123325341 -36274442 + B1_Mur1 SINE Alu 2 140 -9 5 1525 25 51 0 0 chr3 123325663 123325702 -36274081 + AT_rich Low_complexity Low_complexity 1 39 0 5 1525 1176 156 136 0 chr3 123325811 123326010 -36273773 - URR1A DNA MER1_type 0 226 1 5 1525 10947 3 0 0 chr3 123326043 123327935 -36271848 - L1Md_A LINE L1 0 6582 4691 5 1525 194 239 43 43 chr3 123328728 123328798 -36270985 + MIRb SINE MIR 135 204 -64 5 1525 5430 140 51 2 chr3 123329098 123329915 -36269868 + Lx4A LINE L1 6199 7055 -3 5 1525 1253 94 43 24 chr3 123331116 123331580 -36268203 + (TCTA)n Simple_repeat Simple_repeat 1 473 0 5 1525 681 279 36 0 chr3 123331856 123332021 -36267762 - B3A SINE B2 -27 171 1 5 1525 725 85 118 171 chr3 123333047 123333087 -36266696 + B2_Mm2 SINE B2 1 37 -158 5 1525 1026 50 65 0 chr3 123333087 123333226 -36266557 + B1_Mus1 SINE Alu 1 148 0 5 1525 725 85 118 171 chr3 123333226 123333355 -36266428 + B2_Mm2 SINE B2 38 161 -34 5 1525 315 49 0 0 chr3 123333355 123333396 -36266387 + (TAAA)n Simple_repeat Simple_repeat 1 41 0 5 1525 932 255 5 9 chr3 123334020 123334230 -36265553 + B3 SINE B2 3 211 -5 5 1525 795 11 0 0 chr3 123334596 123334688 -36265095 + (CA)n Simple_repeat Simple_repeat 2 93 0 5 1525 365 253 102 39 chr3 123334869 123335079 -36264704 + ORR1E LTR MaLR 19 241 -133 5 1525 517 319 60 4 chr3 123335648 123335897 -36263886 - L1M5 LINE L1 -1361 4785 4523 5 1525 262 244 119 98 chr3 123336005 123336241 -36263542 + L1ME3A LINE L1 5065 5305 -841 5 1525 278 310 49 0 chr3 123336254 123336396 -36263387 + L1ME3A LINE L1 5351 5499 -674 5 1525 245 247 147 27 chr3 123336838 123336988 -36262795 + L1ME3A LINE L1 5994 6161 -12 5 1525 354 294 114 119 chr3 123337747 123338099 -36261684 + MTEb LTR MaLR 4 353 -26 5 1525 198 183 267 0 chr3 123338362 123338422 -36261361 - MIRm SINE MIR -124 152 77 5 1526 463 158 56 8 chr3 123339489 123339740 -36260043 + (TCTA)n Simple_repeat Simple_repeat 1 263 0 5 1526 252 0 0 0 chr3 123341829 123341857 -36257926 + (CAAA)n Simple_repeat Simple_repeat 3 30 0 5 1526 1057 222 190 0 chr3 123342403 123342755 -36257028 + MTD LTR MaLR 1 419 0 5 1526 420 111 0 0 chr3 123344023 123344086 -36255697 + (TCTA)n Simple_repeat Simple_repeat 2 64 0 5 1526 366 315 102 56 chr3 123344686 123344901 -36254882 + MLT2B4 LTR ERVL 72 296 -260 5 1526 852 310 102 2 chr3 123345135 123345546 -36254237 + L1MB5 LINE L1 5548 5999 -175 5 1526 1476 145 273 12 chr3 123345787 123346128 -36253655 + RLTR23 LTR ERV1 1 430 0 5 1526 361 260 19 0 chr3 123346475 123346579 -36253204 - L1MA9 LINE L1 -6 6306 6201 5 1526 264 316 167 39 chr3 123346879 123347238 -36252545 + MLT1A1 LTR MaLR 1 405 -3 5 1526 920 152 6 0 chr3 123347243 123347408 -36252375 + CT-rich Low_complexity Low_complexity 3 168 0 5 1526 1819 201 17 15 chr3 123347410 123347815 -36251968 - Lx2B LINE L1 -1 6999 6594 5 1526 749 192 101 34 chr3 123349486 123349664 -36250119 - ORR1D1 LTR MaLR -184 190 1 5 1526 236 275 139 20 chr3 123349852 123350044 -36249739 - B4A SINE B4 -52 240 2 5 1526 247 309 134 27 chr3 123351065 123351288 -36248495 + MLT-int LTR MaLR 2 248 -1487 5 1526 402 291 44 76 chr3 123351312 123351561 -36248222 + MTE-int LTR MaLR 260 500 -1080 5 1526 348 24 0 0 chr3 123351562 123351603 -36248180 + (TG)n Simple_repeat Simple_repeat 2 42 0 5 1526 21 0 0 0 chr3 123352656 123352677 -36247106 + AT_rich Low_complexity Low_complexity 1 21 0 5 1526 289 291 23 30 chr3 123353000 123353131 -36246652 - Tigger5 DNA MER2_type -114 2292 2163 5 1526 743 58 57 19 chr3 123354513 123354670 -36245113 + (TCTA)n Simple_repeat Simple_repeat 4 166 0 5 1526 220 310 0 0 chr3 123354736 123354807 -36244976 + ID4 SINE ID 13 83 0 5 1526 432 0 0 0 chr3 123355039 123355087 -36244696 + (CA)n Simple_repeat Simple_repeat 2 49 0 5 1526 513 301 109 18 chr3 123355322 123355596 -36244187 - Lx8 LINE L1 -346 7127 6829 5 1526 425 301 75 20 chr3 123356333 123356479 -36243304 + RSINE1 SINE B4 4 157 -8 5 1526 513 0 0 0 chr3 123356498 123356555 -36243228 + (TC)n Simple_repeat Simple_repeat 2 58 0 5 1526 180 0 0 0 chr3 123356555 123356574 -36243209 + (TG)n Simple_repeat Simple_repeat 1 20 0 5 1526 504 32 0 0 chr3 123356998 123357060 -36242723 + (CAAAC)n Simple_repeat Simple_repeat 2 63 0 5 1526 252 245 78 10 chr3 123357116 123357218 -36242565 + B1F SINE Alu 1 113 -36 5 1526 469 209 91 0 chr3 123357590 123357700 -36242083 + PB1D7 SINE Alu 1 120 0 5 1526 502 316 13 19 chr3 123357736 123357894 -36241889 + MTE2b LTR MaLR 42 198 -181 5 1526 368 221 143 9 chr3 123357897 123358002 -36241781 + MTC LTR MaLR 1 119 -300 5 1526 21 0 0 0 chr3 123358026 123358047 -36241736 + AT_rich Low_complexity Low_complexity 1 21 0 5 1526 798 226 11 6 chr3 123358149 123358327 -36241456 + MTC LTR MaLR 114 292 -129 5 1526 476 215 63 49 chr3 123358320 123358462 -36241321 + RMER15 LTR ERVL 432 575 0 5 1526 6297 70 27 1 chr3 123358532 123359347 -36240436 + L1_Mus1 LINE L1 5732 6567 0 5 1526 216 0 0 0 chr3 123359350 123359374 -36240409 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 5 1526 700 318 25 101 chr3 123359475 123359881 -36239902 - MTE2a LTR MaLR 0 379 5 5 1526 540 284 152 0 chr3 123360292 123360542 -36239241 + B4A SINE B4 3 290 -2 5 1526 215 250 19 0 chr3 123360546 123360598 -36239185 + (CA)n Simple_repeat Simple_repeat 1 53 0 5 1526 189 286 0 49 chr3 123360831 123360912 -36238871 - MIRb SINE MIR -5 263 187 5 1526 333 0 0 0 chr3 123361145 123361182 -36238601 + (TG)n Simple_repeat Simple_repeat 1 37 0 5 1526 523 223 107 0 chr3 123361185 123361297 -36238486 - RSINE1 SINE B4 -35 130 7 5 1526 284 243 0 51 chr3 123361446 123361524 -36238259 + LTR40b LTR ERVL 162 235 -227 5 1526 249 197 118 0 chr3 123361597 123361673 -36238110 + LTR40b LTR ERVL 368 452 -10 5 1526 186 250 38 19 chr3 123363036 123363089 -36236694 - MIRb SINE MIR -82 186 133 5 1526 269 363 38 17 chr3 123363622 123363860 -36235923 + L2 LINE L2 2239 2481 -938 5 1526 199 351 43 9 chr3 123363927 123364042 -36235741 - MIR SINE MIR -54 208 90 5 1526 242 221 25 38 chr3 123365566 123365646 -36234137 + Lx8 LINE L1 7394 7472 -1 5 1526 273 280 40 0 chr3 123366663 123366738 -36233045 - L2 LINE L2 -523 2896 2819 5 1526 486 245 38 0 chr3 123366823 123366929 -36232854 + RSINE1 SINE B4 13 122 -43 5 1526 8941 134 12 30 chr3 123367009 123368675 -36231108 + Lx2B LINE L1 5363 6995 -5 5 1526 4730 87 6 106 chr3 123368767 123369601 -36230182 - RMER17A LTR ERVK 0 751 1 5 1526 391 266 0 123 chr3 123370096 123370242 -36229541 + B4A SINE B4 165 292 0 5 1526 1420 263 71 8 chr3 123370912 123371306 -36228477 + MTD LTR MaLR 1 419 0 5 1526 1073 89 0 0 chr3 123371463 123371598 -36228185 + B1_Mus1 SINE Alu 1 135 -13 5 1526 351 0 0 0 chr3 123371598 123371637 -36228146 + (CAAA)n Simple_repeat Simple_repeat 1 39 0 5 1526 987 309 44 14 chr3 123371658 123372022 -36227761 + MTEa LTR MaLR 5 379 0 5 1526 364 320 10 0 chr3 123372671 123372774 -36227009 - PB1D10 SINE Alu -8 109 6 5 1526 30 59 0 0 chr3 123372885 123372936 -36226847 + AT_rich Low_complexity Low_complexity 1 51 0 5 1526 255 288 75 0 chr3 123373308 123373388 -36226395 - RSINE1 SINE B4 -29 136 51 5 1526 21 0 0 0 chr3 123376556 123376577 -36223206 + AT_rich Low_complexity Low_complexity 1 21 0 5 1526 428 0 19 0 chr3 123377225 123377277 -36222506 + (TAA)n Simple_repeat Simple_repeat 3 55 0 5 1526 263 261 223 16 chr3 123377282 123377403 -36222380 - B1F SINE Alu -2 147 2 5 1526 189 0 0 0 chr3 123378122 123378143 -36221640 + (A)n Simple_repeat Simple_repeat 1 21 0 5 1526 1981 145 82 9 chr3 123378705 123379047 -36220736 + ORR1B2 LTR MaLR 1 367 0 5 1526 480 18 0 0 chr3 123379334 123379391 -36220392 + (CAGG)n Simple_repeat Simple_repeat 2 58 0 5 1526 466 149 0 74 chr3 123379495 123379879 -36219904 + CT-rich Low_complexity Low_complexity 1 355 0 5 1526 574 144 0 74 chr3 123379892 123380840 -36218943 + CT-rich Low_complexity Low_complexity 1 878 0 5 1526 424 154 0 74 chr3 123380859 123381048 -36218735 + CT-rich Low_complexity Low_complexity 4 178 0 5 1526 529 126 0 74 chr3 123381067 123381256 -36218527 + CT-rich Low_complexity Low_complexity 4 178 0 5 1526 436 154 0 74 chr3 123381314 123381503 -36218280 + CT-rich Low_complexity Low_complexity 4 178 0 5 1526 520 154 0 72 chr3 123381518 123382035 -36217748 + CT-rich Low_complexity Low_complexity 1 479 0 5 1526 455 151 0 71 chr3 123382063 123382503 -36217280 + CT-rich Low_complexity Low_complexity 1 408 0 5 1526 508 150 0 71 chr3 123382522 123383035 -36216748 + CT-rich Low_complexity Low_complexity 1 476 0 5 1526 532 131 0 74 chr3 123383054 123383243 -36216540 + CT-rich Low_complexity Low_complexity 4 178 0 5 1526 607 141 0 71 chr3 123383275 123383866 -36215917 + CT-rich Low_complexity Low_complexity 1 549 0 5 1526 424 268 51 32 chr3 123384920 123385078 -36214705 - L1MA4 LINE L1 -363 5937 5777 5 1526 2599 184 27 42 chr3 123385194 123385818 -36213965 - RCHARR1 DNA MER1_type -26 948 334 5 1526 688 299 19 5 chr3 123385881 123386086 -36213697 - RCHARR1 DNA MER1_type -764 210 3 5 1526 222 37 0 0 chr3 123386214 123386241 -36213542 + (TG)n Simple_repeat Simple_repeat 1 27 0 5 1526 2172 200 21 73 chr3 123386610 123387170 -36212613 - RMER15 LTR ERVL 0 575 45 5 1526 1050 111 0 0 chr3 123387236 123387398 -36212385 + Lx LINE L1 6481 6642 -12 5 1526 378 0 0 0 chr3 123387398 123387440 -36212343 + (GA)n Simple_repeat Simple_repeat 1 42 0 5 1526 216 0 0 0 chr3 123388618 123388642 -36211141 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 5 1526 306 0 0 0 chr3 123388757 123388791 -36210992 + (TA)n Simple_repeat Simple_repeat 1 34 0 5 1526 211 328 201 10 chr3 123390045 123390239 -36209544 + MIR SINE MIR 32 262 0 5 1526 378 0 0 0 chr3 123390625 123390667 -36209116 + (TG)n Simple_repeat Simple_repeat 2 43 0 5 1526 1311 155 9 9 chr3 123390761 123390976 -36208807 + B3 SINE B2 2 216 0 6 1526 261 57 0 0 chr3 123393788 123393823 -36205960 + (CGGGG)n Simple_repeat Simple_repeat 4 38 0 6 1526 341 284 0 5 chr3 123394770 123394866 -36204917 - ID2 SINE ID -47 105 12 6 1526 1104 90 0 0 chr3 123394882 123395049 -36204734 + (TC)n Simple_repeat Simple_repeat 1 167 0 6 1526 287 182 111 49 chr3 123395088 123395169 -36204614 + RSINE1 SINE B4 11 96 -69 6 1526 2303 195 106 27 chr3 123395169 123395808 -36203975 + Lx7 LINE L1 7003 7692 -4 6 1526 29 28 0 0 chr3 123397491 123397527 -36202256 + AT_rich Low_complexity Low_complexity 1 36 0 6 1526 273 57 0 0 chr3 123397605 123397640 -36202143 + (TTA)n Simple_repeat Simple_repeat 2 36 0 6 1526 267 31 0 0 chr3 123398464 123398496 -36201287 + (A)n Simple_repeat Simple_repeat 1 32 0 6 1526 509 186 109 109 chr3 123399267 123399442 -36200341 - MTE2b LTR MaLR 0 379 205 6 1526 603 40 0 0 chr3 123400454 123400528 -36199255 + (CA)n Simple_repeat Simple_repeat 2 75 0 6 1526 405 0 0 0 chr3 123400658 123400703 -36199080 + (TA)n Simple_repeat Simple_repeat 1 45 0 6 1526 221 353 29 19 chr3 123400995 123401099 -36198684 + MIRb SINE MIR 17 121 -147 6 1526 600 172 0 0 chr3 123401229 123401345 -36198438 + (TA)n Simple_repeat Simple_repeat 2 117 0 6 1526 433 333 81 17 chr3 123401440 123401614 -36198169 - B3A SINE B2 -2 196 12 6 1526 2874 176 45 23 chr3 123401683 123402240 -36197543 - RLTR20B3 LTR ERVK 0 577 9 6 1526 620 309 17 32 chr3 123402756 123403065 -36196718 + RMER1C Other Other 375 758 -584 6 1526 350 252 134 126 chr3 123403089 123403343 -36196440 + RMER1C Other Other 1069 1324 -18 6 1526 2131 131 119 14 chr3 123403654 123404081 -36195702 - RMER6C LTR ERVK 0 690 219 6 1526 674 247 90 0 chr3 123404066 123404244 -36195539 - RMER5 LTR ERV1 -337 197 4 6 1526 429 20 0 0 chr3 123404527 123404577 -36195206 + (CA)n Simple_repeat Simple_repeat 2 51 0 6 1526 324 275 178 20 chr3 123404585 123404737 -36195046 - ORR1E LTR MaLR -176 183 8 6 1526 536 247 110 0 chr3 123404816 123404962 -36194821 + B3 SINE B2 47 208 -8 6 1526 276 100 0 0 chr3 123404968 123405008 -36194775 + (TGAA)n Simple_repeat Simple_repeat 3 42 0 6 1526 396 0 0 0 chr3 123406925 123406969 -36192814 + (TTTA)n Simple_repeat Simple_repeat 3 46 0 6 1526 1239 70 0 0 chr3 123406970 123407128 -36192655 - B2_Mm2 SINE B2 -37 158 1 6 1526 288 0 0 0 chr3 123408814 123408846 -36190937 + (TG)n Simple_repeat Simple_repeat 2 33 0 6 1526 216 0 0 0 chr3 123408875 123408899 -36190884 + (A)n Simple_repeat Simple_repeat 1 24 0 6 1526 316 267 37 28 chr3 123409298 123409406 -36190377 - RMER5 LTR ERV1 -7 527 419 6 1526 690 299 93 25 chr3 123409417 123409771 -36190012 - RMER5 LTR ERV1 -156 378 1 6 1526 3682 89 12 0 chr3 123410634 123411138 -36188645 + Lx LINE L1 6145 6654 0 6 1526 34 24 0 0 chr3 123411310 123411351 -36188432 + AT_rich Low_complexity Low_complexity 1 41 0 6 1526 242 267 32 32 chr3 123411670 123411763 -36188020 - L1M5 LINE L1 -500 5624 5532 6 1526 396 0 0 0 chr3 123412469 123412513 -36187270 + (CAAA)n Simple_repeat Simple_repeat 2 45 0 6 1526 3258 42 5 5 chr3 123412600 123413004 -36186779 + L1Md_F2 LINE L1 6170 6573 -9 6 1526 210 250 0 0 chr3 123413748 123413804 -36185979 + CT-rich Low_complexity Low_complexity 1 56 0 6 1526 241 308 135 97 chr3 123415195 123415454 -36184329 - MLT1C LTR MaLR -198 269 1 6 1526 197 65 0 31 chr3 123415761 123415793 -36183990 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 6 1526 5079 174 88 9 chr3 123416303 123417385 -36182398 - L1_Mur2 LINE L1 -175 5702 4536 6 1526 5805 101 3 1 chr3 123417385 123418237 -36181546 + L1_Mus1 LINE L1 5714 6567 0 6 1526 695 75 0 0 chr3 123418914 123419007 -36180776 + L1Md_F2 LINE L1 5494 5586 -297 6 1526 7809 52 14 4 chr3 123419007 123419993 -36179790 + L1Md_F2 LINE L1 5587 6582 0 6 1526 554 156 9 35 chr3 123419993 123420012 -36179771 + L1_Mur2 LINE L1 5581 5597 -280 6 1526 24 32 0 0 chr3 123420224 123420255 -36179528 + AT_rich Low_complexity Low_complexity 1 31 0 6 1526 327 78 0 0 chr3 123422279 123422330 -36177453 + (TG)n Simple_repeat Simple_repeat 2 52 0 6 1526 393 22 0 0 chr3 123423750 123423796 -36175987 + (TTA)n Simple_repeat Simple_repeat 3 48 0 6 1526 426 318 103 98 chr3 123424675 123425094 -36174689 + RMER10A LTR ERVL 13 433 -9 6 1526 232 48 48 0 chr3 123425253 123425295 -36174488 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 6 1526 2861 136 91 4 chr3 123426042 123426524 -36173259 + RLTR28 LTR ERVL 1 524 0 6 1526 250 307 95 17 chr3 123426616 123426732 -36173051 + Lx8 LINE L1 7019 7143 -330 6 1526 268 316 32 64 chr3 123426777 123426902 -36172881 + RMER15 LTR ERVL 359 479 -96 6 1526 842 199 0 0 chr3 123427094 123427235 -36172548 - B1_Mus2 SINE Alu -6 141 1 6 1526 525 266 46 66 chr3 123427588 123427785 -36171998 - MTEb LTR MaLR -5 374 182 6 1526 1690 176 53 3 chr3 123427826 123428145 -36171638 + ORR1D1 LTR MaLR 40 374 0 6 1526 413 279 23 105 chr3 123428745 123428917 -36170866 - RSINE1 SINE B4 0 165 8 6 1526 450 170 13 26 chr3 123428939 123429090 -36170693 + (CA)n Simple_repeat Simple_repeat 2 150 0 6 1526 682 109 0 16 chr3 123429120 123429241 -36170542 + (CA)n Simple_repeat Simple_repeat 1 119 0 6 1526 328 356 102 37 chr3 123429299 123429515 -36170268 + HAL1 LINE L1 345 574 -1933 6 1526 33781 68 3 3 chr3 123431354 123437539 -36162244 - L1Md_F2 LINE L1 -1 6584 304 6 1526 180 111 0 0 chr3 123439203 123439230 -36160553 + (T)n Simple_repeat Simple_repeat 1 27 0 6 1526 1239 165 29 53 chr3 123439497 123439740 -36160043 - RLTR25B LTR ERVK -733 295 59 6 1526 748 238 12 23 chr3 123439776 123439948 -36159835 - ORR1D1 LTR MaLR -204 170 1 6 1526 483 18 0 0 chr3 123440265 123440321 -36159462 + (TTCC)n Simple_repeat Simple_repeat 1 56 0 6 1526 540 89 0 0 chr3 123440321 123440400 -36159383 + (TC)n Simple_repeat Simple_repeat 2 80 0 6 1526 351 0 0 0 chr3 123440400 123440439 -36159344 + (CA)n Simple_repeat Simple_repeat 1 39 0 6 1526 276 53 0 0 chr3 123440599 123440637 -36159146 + (CAAAAA)n Simple_repeat Simple_repeat 2 39 0 6 1526 522 83 0 0 chr3 123440920 123440992 -36158791 + (TG)n Simple_repeat Simple_repeat 1 72 0 6 1526 22 80 0 0 chr3 123441645 123441695 -36158088 + AT_rich Low_complexity Low_complexity 1 50 0 6 1526 30079 4 0 0 chr3 123441699 123446214 -36153569 - L1Md_A LINE L1 -2 6580 2066 6 1526 967 9 0 0 chr3 123446214 123446321 -36153462 - U6 snRNA snRNA 0 107 1 6 1526 513 47 0 0 chr3 123446644 123446708 -36153075 + (TTCC)n Simple_repeat Simple_repeat 4 67 0 6 1526 6046 116 26 16 chr3 123446708 123447698 -36152085 - Lx LINE L1 0 6654 5655 6 1526 2594 129 2 0 chr3 123447694 123448104 -36151679 + Lx LINE L1 5246 5656 -227 6 1526 457 225 0 59 chr3 123448299 123448417 -36151366 + L1_Rod LINE L1 5465 5575 -272 6 1526 435 305 60 12 chr3 123448423 123448576 -36151207 + Lx8 LINE L1 6797 6966 -507 6 1526 552 291 14 7 chr3 123448737 123448879 -36150904 - ID_B1 SINE B4 -1 223 81 6 1526 285 279 108 42 chr3 123449046 123449427 -36150356 - L1MCa LINE L1 -4835 1549 1247 6 1526 405 0 0 0 chr3 123450101 123450146 -36149637 + (TG)n Simple_repeat Simple_repeat 1 45 0 6 1526 263 333 37 0 chr3 123450200 123450335 -36149448 - L1M LINE L1 -751 5417 5278 6 1526 581 293 51 20 chr3 123450431 123450783 -36149000 + L1M3 LINE L1 3717 4079 -2061 6 1526 25 31 0 0 chr3 123450798 123450830 -36148953 + AT_rich Low_complexity Low_complexity 1 32 0 6 1526 511 348 0 5 chr3 123450839 123451027 -36148756 - B3A SINE B2 -11 187 1 6 1526 409 320 14 65 chr3 123451413 123451627 -36148156 + L1M3 LINE L1 4082 4284 -1856 6 1526 439 20 0 0 chr3 123451617 123451668 -36148115 + L1Md_F2 LINE L1 5536 5586 -297 6 1526 8028 46 4 6 chr3 123451668 123452654 -36147129 + L1Md_F2 LINE L1 5587 6570 -12 6 1526 311 274 0 0 chr3 123452675 123452748 -36147035 + L1M3 LINE L1 4297 4369 -1774 6 1526 268 220 17 0 chr3 123453263 123453322 -36146461 + MLT1A0 LTR MaLR 65 124 -241 6 1526 434 264 25 75 chr3 123453337 123453497 -36146286 + MER77 LTR ERVL 448 599 -8 6 1526 253 377 157 12 chr3 123453523 123453765 -36146018 - MLT1J LTR MaLR -235 277 1 6 1526 450 0 0 0 chr3 123454310 123454360 -36145423 + (TC)n Simple_repeat Simple_repeat 1 50 0 6 1526 318 26 0 0 chr3 123454360 123454398 -36145385 + (CA)n Simple_repeat Simple_repeat 1 39 0 6 1526 2949 285 66 22 chr3 123454400 123455486 -36144297 - Lx9 LINE L1 -170 7474 6341 6 1526 1333 154 18 0 chr3 123455801 123456022 -36143761 + URR1A DNA MER1_type 2 226 0 6 1526 1733 202 64 15 chr3 123456120 123456446 -36143337 + Lx9 LINE L1 7149 7493 -151 6 1526 405 0 0 0 chr3 123456446 123456491 -36143292 + (CA)n Simple_repeat Simple_repeat 1 45 0 6 1526 1733 202 64 15 chr3 123456491 123456631 -36143152 + Lx9 LINE L1 7494 7638 -6 6 1526 193 109 43 0 chr3 123456850 123456896 -36142887 + (TTTG)n Simple_repeat Simple_repeat 2 49 0 6 1526 522 112 10 10 chr3 123457774 123457873 -36141910 + Lx4A LINE L1 6957 7055 -3 6 1526 450 0 0 0 chr3 123459520 123459570 -36140213 + (CA)n Simple_repeat Simple_repeat 2 51 0 6 1526 21 0 0 0 chr3 123460591 123460612 -36139171 + AT_rich Low_complexity Low_complexity 1 21 0 6 1526 23 68 0 0 chr3 123460649 123460693 -36139090 + AT_rich Low_complexity Low_complexity 1 44 0 6 1526 1327 310 75 14 chr3 123460789 123461362 -36138421 + Lx8 LINE L1 6112 6719 -754 6 1526 248 274 61 31 chr3 123461461 123461559 -36138224 - PB1D10 SINE Alu -12 105 5 6 1526 804 92 0 0 chr3 123461978 123462097 -36137686 + (TG)n Simple_repeat Simple_repeat 1 119 0 6 1526 428 0 19 0 chr3 123463288 123463340 -36136443 + (TC)n Simple_repeat Simple_repeat 1 53 0 6 1526 700 250 0 39 chr3 123466256 123466410 -36133373 + B3 SINE B2 8 155 -61 6 1526 347 298 40 32 chr3 123466388 123466513 -36133270 - MLT1A0 LTR MaLR -239 126 1 6 1526 249 313 149 48 chr3 123466563 123466751 -36133032 - MER20 DNA MER1_type -5 214 8 6 1526 331 301 105 40 chr3 123466876 123467153 -36132630 + L1ME1 LINE L1 5710 6004 -175 6 1526 1221 222 129 9 chr3 123467947 123468279 -36131504 - ORR1D1 LTR MaLR -1 373 2 7 1526 260 236 208 69 chr3 123468558 123468717 -36131066 - MLT1D LTR MaLR -290 215 35 7 1527 225 354 39 29 chr3 123470855 123470957 -36128826 - LTR16A1 LTR ERVL -319 137 35 7 1527 446 271 30 8 chr3 123471609 123471743 -36128040 - MER2 DNA MER2_type -122 223 87 7 1527 5666 169 87 12 chr3 123471814 123473473 -36126310 + Lx7 LINE L1 886 2670 -3210 7 1527 873 154 136 45 chr3 123473488 123473753 -36126030 + Lx3C LINE L1 5888 6176 -800 7 1527 13206 70 12 18 chr3 123473770 123475586 -36124197 - RLTR22_Mus LTR ERVK -4 1804 1 7 1527 3990 186 52 6 chr3 123475586 123476378 -36123405 + Lx2B LINE L1 6158 6985 -15 7 1527 549 125 0 0 chr3 123476400 123476488 -36123295 + (TA)n Simple_repeat Simple_repeat 2 89 0 7 1527 1819 139 34 0 chr3 123476564 123476888 -36122895 + Lx7 LINE L1 3565 3899 -1981 7 1527 7413 190 55 7 chr3 123476887 123479013 -36120770 + Lx7 LINE L1 4177 6415 -1281 7 1527 629 269 215 87 chr3 123479051 123479502 -36120281 - RMER4B LTR ERVK -18 567 59 7 1527 873 107 20 0 chr3 123479502 123479652 -36120131 + Lx3_Mus LINE L1 6856 7008 -1 7 1527 195 24 0 106 chr3 123479653 123479700 -36120083 + (TAAAAA)n Simple_repeat Simple_repeat 1 42 0 7 1527 2476 214 103 17 chr3 123479751 123480509 -36119274 + Lx7 LINE L1 6410 7254 -442 7 1527 9554 73 17 10 chr3 123480723 123482788 -36116995 - Lx3_Mus LINE L1 -8 7001 4921 7 1527 438 49 0 47 chr3 123482809 123482873 -36116910 + L1_Mur1 LINE L1 3909 3969 -1917 7 1527 1942 279 143 57 chr3 123482978 123484302 -36115481 + Lx6 LINE L1 5991 7427 -33 7 1527 518 293 97 81 chr3 123484334 123484654 -36115129 - Tigger1 DNA MER2_type -101 2317 1993 7 1527 276 316 77 82 chr3 123484662 123484980 -36114803 - MTEa LTR MaLR 0 379 52 7 1527 364 299 0 0 chr3 123485054 123485151 -36114632 + Tigger1 DNA MER2_type 1078 1174 -1244 7 1527 299 252 127 24 chr3 123485138 123485264 -36114519 - Tigger1 DNA MER2_type -450 1968 1830 7 1527 350 286 91 21 chr3 123485285 123485428 -36114355 - Tigger1 DNA MER2_type -676 1742 1590 7 1527 244 290 115 31 chr3 123485429 123485525 -36114258 - PB1D7 SINE Alu -7 113 10 7 1527 955 282 101 15 chr3 123485555 123485882 -36113901 - Tigger1 DNA MER2_type -851 1567 1212 7 1527 1258 281 96 0 chr3 123485882 123486235 -36113548 - MTD LTR MaLR 0 419 33 7 1527 584 313 82 0 chr3 123486250 123486319 -36113464 - Tigger1 DNA MER2_type -1196 1222 1141 7 1527 216 0 0 0 chr3 123486319 123486343 -36113440 + (TG)n Simple_repeat Simple_repeat 2 25 0 7 1527 584 313 82 0 chr3 123486343 123486506 -36113277 - Tigger1 DNA MER2_type -1278 1140 972 7 1527 747 295 5 20 chr3 123486508 123486705 -36113078 + B3 SINE B2 1 194 -22 7 1527 495 33 0 0 chr3 123486705 123486766 -36113017 + (TAAAA)n Simple_repeat Simple_repeat 5 65 0 7 1527 2440 292 49 30 chr3 123486828 123487672 -36112111 - Tigger1 DNA MER2_type -1501 917 58 7 1527 958 150 191 5 chr3 123488048 123488236 -36111547 - URR1A DNA MER1_type -3 223 1 7 1527 194 108 0 51 chr3 123488720 123488759 -36111024 + CT-rich Low_complexity Low_complexity 2 38 0 7 1527 564 89 30 0 chr3 123488804 123488905 -36110878 + (TG)n Simple_repeat Simple_repeat 1 104 0 7 1527 505 269 0 0 chr3 123488905 123489009 -36110774 - RSINE1 SINE B4 -59 106 3 7 1527 601 314 72 16 chr3 123489964 123490171 -36109612 + RMER15 LTR ERVL 308 527 -48 7 1527 369 0 0 0 chr3 123490171 123490212 -36109571 + (TG)n Simple_repeat Simple_repeat 1 41 0 7 1527 601 314 72 16 chr3 123490212 123490253 -36109530 + RMER15 LTR ERVL 528 570 -5 7 1527 421 349 88 40 chr3 123490261 123490779 -36109004 + L1MEf LINE L1 1185 1815 -4663 7 1527 676 256 0 0 chr3 123490791 123490920 -36108863 + RSINE1 SINE B4 4 132 -33 7 1527 523 239 11 12 chr3 123490920 123491086 -36108697 + L1MA4A LINE L1 5479 5626 -260 7 1527 279 208 108 59 chr3 123491201 123491303 -36108480 + L1MA4A LINE L1 5782 5888 -415 7 1527 33 25 0 0 chr3 123491312 123491352 -36108431 + AT_rich Low_complexity Low_complexity 1 40 0 7 1527 285 29 0 0 chr3 123491356 123491390 -36108393 + (TG)n Simple_repeat Simple_repeat 1 34 0 7 1527 342 0 0 0 chr3 123491390 123491427 -36108356 + (GA)n Simple_repeat Simple_repeat 1 38 0 7 1527 380 333 76 42 chr3 123491913 123492151 -36107632 - MIR SINE MIR 0 262 17 7 1527 3024 231 92 39 chr3 123492347 123493320 -36106463 - Lx9 LINE L1 0 7644 6620 7 1527 336 362 117 46 chr3 123494310 123494617 -36105166 + MLT2E LTR ERVL 1 329 -299 7 1527 25 65 0 0 chr3 123494637 123494683 -36105100 + AT_rich Low_complexity Low_complexity 1 46 0 7 1527 1011 276 143 18 chr3 123494733 123495026 -36104757 - MTD LTR MaLR 0 419 84 7 1527 2970 161 149 2 chr3 123495026 123495625 -36104158 - RMER6C LTR ERVK 0 690 4 7 1527 1011 276 143 18 chr3 123495625 123495667 -36104116 - MTD LTR MaLR -336 83 42 7 1527 607 224 51 11 chr3 123495771 123495947 -36103836 + Lx3C LINE L1 6780 6962 -14 7 1527 200 35 35 0 chr3 123495948 123495977 -36103806 + (TAA)n Simple_repeat Simple_repeat 2 31 0 7 1527 186 156 0 0 chr3 123496519 123496564 -36103219 + (CATA)n Simple_repeat Simple_repeat 2 46 0 7 1527 260 306 71 40 chr3 123496986 123497112 -36102671 + RMER20B LTR ERVK 234 363 -264 7 1527 272 262 55 55 chr3 123497159 123497268 -36102515 + RMER20B LTR ERVK 478 586 -41 7 1527 605 258 217 16 chr3 123497297 123497561 -36102222 + L1_Mur3 LINE L1 3127 3453 -2427 7 1527 387 60 0 0 chr3 123497561 123497611 -36102172 + (TAA)n Simple_repeat Simple_repeat 1 50 0 7 1527 605 258 217 16 chr3 123497611 123497728 -36102055 + L1_Mur3 LINE L1 3454 3584 -2296 7 1527 180 0 0 0 chr3 123497753 123497773 -36102010 + (TAAAAA)n Simple_repeat Simple_repeat 5 24 0 7 1527 1308 280 32 14 chr3 123497819 123498163 -36101620 + ORR1D2 LTR MaLR 21 370 0 7 1527 2398 241 35 41 chr3 123498163 123498800 -36100983 + ORR1D2-int LTR MaLR 1 633 -737 7 1527 445 215 113 106 chr3 123499849 123500000 -36099783 + MLT2C2 LTR ERVL 1 152 -312 7 1527 382 295 139 40 chr3 123500038 123500211 -36099572 + MLT2D LTR ERVL 161 350 -64 1 1527 194 262 0 47 chr3 123500546 123500610 -36099173 - L2a LINE L2 0 3426 3366 2 1527 480 168 0 0 chr3 123501412 123501537 -36098246 + GA-rich Low_complexity Low_complexity 2 126 0 3 1527 258 160 0 0 chr3 123501812 123501862 -36097921 + T-rich Low_complexity Low_complexity 1 50 0 4 1527 7269 101 9 1 chr3 123501905 123503262 -36096521 - L1_Mus4 LINE L1 0 6636 5270 5 1527 1227 35 7 0 chr3 123503283 123503428 -36096355 - B1_Mm SINE Alu 0 147 2 6 1527 9496 86 20 4 chr3 123503429 123504929 -36094854 - MusHAL1 LINE L1 -1188 1524 1 7 1527 1980 169 8 34 chr3 123504934 123505319 -36094464 + RLTR9E LTR ERVK 35 409 0 8 1527 1167 66 122 0 chr3 123505319 123505500 -36094283 - L1VL4 LINE L1 -5556 746 544 9 1527 657 186 135 109 chr3 123505500 123505693 -36094090 - RLTR17 LTR ERVK 0 692 495 1 1527 309 151 0 0 chr3 123506919 123506972 -36092811 + CT-rich Low_complexity Low_complexity 3 55 0 1 1527 633 249 22 128 chr3 123507274 123507500 -36092283 - MTD LTR MaLR -217 202 1 1 1527 2732 153 152 8 chr3 123507664 123508196 -36091587 + RMER19C LTR ERVK 3 611 0 1 1527 251 283 21 21 chr3 123508612 123508706 -36091077 + CT-rich Low_complexity Low_complexity 2 95 0 1 1527 24 91 0 0 chr3 123509283 123509349 -36090434 + AT_rich Low_complexity Low_complexity 1 66 0 1 1527 261 217 0 80 chr3 123509613 123509688 -36090095 - L1MA6 LINE L1 -10 6290 6222 1 1527 22 35 0 0 chr3 123509888 123509917 -36089866 + AT_rich Low_complexity Low_complexity 1 29 0 1 1527 2142 164 19 0 chr3 123509931 123510302 -36089481 + ORR1C1 LTR MaLR 1 378 0 1 1527 715 211 217 29 chr3 123511784 123512030 -36087753 - MTD LTR MaLR 0 419 123 1 1527 950 222 32 0 chr3 123514709 123514894 -36084889 + B3 SINE B2 20 210 -6 2 1527 1525 155 128 86 chr3 123515224 123515431 -36084352 - RMER10B LTR ERVL 0 398 194 2 1527 956 75 40 0 chr3 123515431 123515604 -36084179 + (GA)n Simple_repeat Simple_repeat 1 180 0 2 1527 1525 155 128 86 chr3 123515604 123515778 -36084005 - RMER10B LTR ERVL -205 193 1 2 1527 545 299 176 5 chr3 123516016 123516238 -36083545 + MTEa LTR MaLR 5 264 -115 2 1527 1263 199 37 4 chr3 123516299 123516541 -36083242 + ORR1D1 LTR MaLR 1 250 -124 2 1527 2170 200 130 4 chr3 123516541 123517042 -36082741 + RLTR12A LTR ERVK 1 564 -4 2 1527 776 196 8 0 chr3 123517041 123517174 -36082609 + ORR1D1 LTR MaLR 241 374 0 2 1527 414 262 74 0 chr3 123517722 123517844 -36081939 + MTEa LTR MaLR 247 377 -2 2 1527 11370 90 8 1 chr3 123518792 123520452 -36079331 + L1_Mm LINE L1 4030 5701 -182 2 1527 36882 17 22 7 chr3 123520450 123525644 -36074139 + L1_Mus1 LINE L1 411 5586 -297 2 1527 8713 21 0 0 chr3 123525644 123526639 -36073144 + L1Md_A LINE L1 5587 6581 -1 2 1527 36882 58 16 0 chr3 123526639 123527509 -36072274 + L1_Mus1 LINE L1 5587 6566 -1 2 1527 25 0 0 0 chr3 123527638 123527663 -36072120 + AT_rich Low_complexity Low_complexity 1 25 0 3 1527 1104 124 0 0 chr3 123528669 123528847 -36070936 + (TCC)n Simple_repeat Simple_repeat 3 180 0 3 1527 1439 22 0 16 chr3 123528932 123529114 -36070669 - L1Md_T LINE L1 0 6582 6404 3 1527 643 13 0 0 chr3 123529114 123529190 -36070593 + L1Md_T LINE L1 6317 6392 -190 3 1527 186 143 0 0 chr3 123529302 123529337 -36070446 + (CAA)n Simple_repeat Simple_repeat 2 36 0 3 1527 1380 236 71 88 chr3 123529454 123529735 -36070048 - MTD LTR MaLR 0 419 113 3 1527 776 91 21 14 chr3 123529735 123529880 -36069903 + L1_Mus3 LINE L1 6493 6638 0 3 1527 1380 236 71 88 chr3 123529880 123530021 -36069762 - MTD LTR MaLR -307 112 4 3 1527 22 0 0 0 chr3 123532584 123532606 -36067177 + AT_rich Low_complexity Low_complexity 1 22 0 3 1527 21 36 0 0 chr3 123533053 123533081 -36066702 + AT_rich Low_complexity Low_complexity 1 28 0 3 1527 705 272 60 20 chr3 123534570 123535066 -36064717 + L1_Mur3 LINE L1 869 1379 -4501 3 1527 1064 199 249 22 chr3 123535078 123535535 -36064248 + L1_Mur3 LINE L1 1447 2007 -3873 3 1527 249 196 20 0 chr3 123535554 123535605 -36064178 + CT-rich Low_complexity Low_complexity 3 54 0 3 1527 387 0 0 0 chr3 123535641 123535684 -36064099 + (TG)n Simple_repeat Simple_repeat 1 43 0 4 1527 572 67 11 0 chr3 123535684 123535774 -36064009 + (GA)n Simple_repeat Simple_repeat 2 92 0 4 1527 23 78 0 0 chr3 123535847 123535898 -36063885 + AT_rich Low_complexity Low_complexity 1 51 0 4 1527 195 42 0 0 chr3 123535991 123536015 -36063768 + (TTTTG)n Simple_repeat Simple_repeat 1 24 0 4 1527 2525 288 60 11 chr3 123536039 123536930 -36062853 - Lx7 LINE L1 -449 7247 6314 4 1527 288 161 12 24 chr3 123537034 123537117 -36062666 + CT-rich Low_complexity Low_complexity 3 84 0 4 1527 186 143 0 0 chr3 123537298 123537333 -36062450 + (CAA)n Simple_repeat Simple_repeat 2 36 0 4 1527 506 194 39 46 chr3 123537465 123537595 -36062188 - MTD LTR MaLR -20 399 271 4 1527 257 416 33 78 chr3 123537591 123537771 -36062012 - B4A SINE B4 -120 172 1 4 1527 23 33 0 0 chr3 123537914 123537944 -36061839 + AT_rich Low_complexity Low_complexity 1 30 0 4 1527 277 304 123 18 chr3 123538572 123538686 -36061097 - ID_B1 SINE B4 -9 215 90 5 1527 393 22 0 0 chr3 123539522 123539568 -36060215 + (TTTTA)n Simple_repeat Simple_repeat 2 47 0 5 1527 2236 188 31 6 chr3 123539740 123540221 -36059562 + RCHARR1 DNA MER1_type 390 882 -92 5 1527 238 258 65 0 chr3 123540700 123540762 -36059021 + B4 SINE B4 5 70 -222 5 1527 192 97 0 0 chr3 123540880 123540911 -36058872 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 5 1527 512 42 0 14 chr3 123540918 123540990 -36058793 + (CCAA)n Simple_repeat Simple_repeat 1 71 0 5 1527 351 0 0 0 chr3 123541077 123541116 -36058667 + (CA)n Simple_repeat Simple_repeat 2 40 0 5 1527 286 277 23 46 chr3 123541213 123541300 -36058483 + MER2 DNA MER2_type 207 291 -54 5 1527 277 292 33 22 chr3 123541296 123541387 -36058396 - RCHARR1 DNA MER1_type -15 959 868 5 1527 222 37 0 0 chr3 123541611 123541638 -36058145 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 5 1527 287 375 0 0 chr3 123542327 123542407 -36057376 - PB1D10 SINE Alu -35 82 3 6 1527 2073 213 78 2 chr3 123544570 123544993 -36054790 + MT2A LTR ERVL 1 455 -78 6 1527 25 0 0 0 chr3 123545114 123545139 -36054644 + AT_rich Low_complexity Low_complexity 1 25 0 6 1527 205 29 0 56 chr3 123545813 123545849 -36053934 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 6 1527 213 39 0 0 chr3 123545942 123545968 -36053815 + (CAA)n Simple_repeat Simple_repeat 2 27 0 6 1527 688 22 0 22 chr3 123548509 123548601 -36051182 + (TCCC)n Simple_repeat Simple_repeat 3 92 0 6 1527 910 259 5 5 chr3 123548661 123548867 -36050916 - ID_B1 SINE B4 -18 206 1 6 1527 1247 190 25 21 chr3 123548960 123549202 -36050581 + ORR1C2 LTR MaLR 87 329 -55 6 1527 733 274 73 64 chr3 123549325 123549733 -36050050 + MLT2B4 LTR ERVL 1 519 -37 6 1527 333 0 0 0 chr3 123549808 123549845 -36049938 + (TG)n Simple_repeat Simple_repeat 2 38 0 6 1527 1805 219 24 24 chr3 123549849 123550261 -36049522 - MTD LTR MaLR -7 412 1 7 1527 483 33 0 0 chr3 123550275 123550336 -36049447 + (TG)n Simple_repeat Simple_repeat 1 61 0 7 1527 279 0 0 0 chr3 123550336 123550366 -36049417 + (GA)n Simple_repeat Simple_repeat 1 31 0 7 1527 619 366 48 3 chr3 123551040 123551355 -36048428 - MER82 DNA MER2_type -324 329 1 7 1527 231 114 0 0 chr3 123552037 123552072 -36047711 + (A)n Simple_repeat Simple_repeat 1 35 0 7 1527 1892 182 72 16 chr3 123552274 123552340 -36047443 - ORR1B1 LTR MaLR 0 394 308 7 1527 1107 23 0 0 chr3 123552340 123552470 -36047313 + (TTCCC)n Simple_repeat Simple_repeat 4 133 0 7 1527 1976 48 0 35 chr3 123552470 123552729 -36047054 - L1_Mus1 LINE L1 -9 6558 6309 7 1527 1892 182 72 16 chr3 123552729 123553034 -36046749 - ORR1B1 LTR MaLR -87 307 2 7 1527 450 252 52 0 chr3 123553034 123553147 -36046636 - B1_Mur2 SINE Alu -26 123 5 7 1527 534 246 138 46 chr3 123553162 123553401 -36046382 - Lx LINE L1 -17 7041 6718 7 1527 644 210 51 0 chr3 123554111 123554249 -36045534 - B1_Mur2 SINE Alu -1 148 4 8 1527 254 50 25 0 chr3 123554579 123554619 -36045164 + (TTTTG)n Simple_repeat Simple_repeat 1 41 0 8 1527 4151 199 56 27 chr3 123554643 123555638 -36044145 - Lx5 LINE L1 -3 7047 6024 8 1527 1163 216 71 41 chr3 123555741 123556108 -36043675 - MTEb LTR MaLR -1 378 1 8 1527 488 299 23 138 chr3 123556415 123556632 -36043151 + B3 SINE B2 2 193 -23 8 1527 1385 164 19 4 chr3 123556787 123557044 -36042739 - Lx LINE L1 -6 6648 6388 7 1527 2409 95 6 0 chr3 123557667 123557992 -36041791 - ORR1A2 LTR MaLR 0 327 1 8 1527 2074 142 78 17 chr3 123558194 123558553 -36041230 + ORR1B1 LTR MaLR 14 394 0 8 1527 27 29 0 0 chr3 123558633 123558667 -36041116 + AT_rich Low_complexity Low_complexity 1 34 0 8 1527 256 197 12 84 chr3 123559650 123559733 -36040050 - RMER12 LTR ERVK -4 1318 1242 8 1527 188 163 23 0 chr3 123559752 123559795 -36039988 + T-rich Low_complexity Low_complexity 1 44 0 8 1527 804 238 3 161 chr3 123559910 123560221 -36039562 - RMER12 LTR ERVK -85 1237 976 8 1527 4249 156 32 17 chr3 123560215 123560996 -36038787 - RMER12 LTR ERVK -528 794 2 8 1527 1378 152 9 0 chr3 123561879 123562102 -36037681 + URR1A DNA MER1_type 2 226 0 9 1527 370 148 0 0 chr3 123562835 123562889 -36036894 - RMER6A LTR ERVK 0 756 703 9 1527 4447 149 37 33 chr3 123562892 123563347 -36036436 - Lx5 LINE L1 -578 6472 6007 9 1527 234 0 0 0 chr3 123563347 123563373 -36036410 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 9 1527 4447 158 22 56 chr3 123563373 123564249 -36035534 - Lx5 LINE L1 -1044 6006 5185 9 1527 1844 157 44 8 chr3 123564248 123564608 -36035175 + L1_Mur2 LINE L1 4119 4491 -1386 9 1527 195 100 0 0 chr3 123564793 123564823 -36034960 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 9 1527 503 336 87 36 chr3 123565095 123565543 -36034240 + Lx8 LINE L1 6871 7341 -132 9 1527 1373 277 43 29 chr3 123566191 123566782 -36033001 + Lx9 LINE L1 5544 6177 -1296 9 1527 420 82 0 0 chr3 123566782 123566843 -36032940 + (TCTA)n Simple_repeat Simple_repeat 3 63 0 9 1527 2613 269 119 48 chr3 123566843 123567876 -36031907 + Lx9 LINE L1 6178 7467 -177 9 1527 216 0 0 0 chr3 123567876 123567900 -36031883 + (CA)n Simple_repeat Simple_repeat 1 24 0 9 1527 2613 267 120 48 chr3 123567900 123568081 -36031702 + Lx9 LINE L1 7468 7625 -19 9 1527 25 0 0 0 chr3 123568142 123568167 -36031616 + AT_rich Low_complexity Low_complexity 1 25 0 1 1527 194 373 68 54 chr3 123568317 123568538 -36031245 + L4 LINE RTE 1517 1740 -289 1 1527 364 272 0 88 chr3 123568790 123568915 -36030868 + MTE2a LTR MaLR 4 117 -262 1 1527 1212 106 0 0 chr3 123568987 123569166 -36030617 + (TCTCC)n Simple_repeat Simple_repeat 1 179 0 1 1527 216 97 0 0 chr3 123569169 123569200 -36030583 + (TTCCC)n Simple_repeat Simple_repeat 2 32 0 1 1527 1508 263 38 20 chr3 123569200 123569596 -36030187 + MTD LTR MaLR 15 417 -2 1 1527 651 211 49 69 chr3 123569597 123569801 -36029982 + MTE2a LTR MaLR 152 351 -28 1 1527 207 0 0 0 chr3 123569849 123569872 -36029911 + (CAAA)n Simple_repeat Simple_repeat 4 26 0 1 1527 1964 299 151 35 chr3 123569877 123570787 -36028996 + MTE2a-int LTR MaLR 2 1280 -300 1 1527 213 39 0 0 chr3 123570787 123570813 -36028970 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 1 1527 1964 295 150 30 chr3 123570813 123570881 -36028902 + MTE2a-int LTR MaLR 1281 1349 -231 1 1527 447 19 0 0 chr3 123570881 123570933 -36028850 + (TTA)n Simple_repeat Simple_repeat 3 54 0 1 1527 1964 295 150 30 chr3 123570933 123571106 -36028677 + MTE2a-int LTR MaLR 1350 1579 -1 1 1527 304 319 14 48 chr3 123571106 123571251 -36028532 + MTE2a LTR MaLR 1 140 -239 1 1527 707 182 23 0 chr3 123571256 123571432 -36028351 - Lx2B LINE L1 -804 6196 6017 1 1527 824 37 19 0 chr3 123571448 123571555 -36028228 + (TTTC)n Simple_repeat Simple_repeat 2 110 0 1 1527 525 16 0 0 chr3 123571775 123571837 -36027946 + (TA)n Simple_repeat Simple_repeat 2 63 0 1 1527 996 139 155 0 chr3 123572485 123572679 -36027104 - URR1A DNA MER1_type -2 224 1 1 1527 285 51 0 0 chr3 123573317 123573356 -36026427 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 1 1527 1028 103 6 0 chr3 123573385 123573541 -36026242 + (TTCC)n Simple_repeat Simple_repeat 4 160 0 1 1527 282 56 0 0 chr3 123573541 123573577 -36026206 + (TC)n Simple_repeat Simple_repeat 2 37 0 1 1527 1189 186 14 0 chr3 123573844 123574065 -36025718 - URR1B DNA MER1_type -1 224 1 1 1527 6104 100 71 8 chr3 123574145 123574494 -36025289 + Lx3A LINE L1 5939 6296 -685 1 1527 342 0 0 0 chr3 123574494 123574532 -36025251 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 1 1527 6104 100 71 8 chr3 123574532 123575157 -36024626 + Lx3A LINE L1 6297 6973 -8 1 1527 22 0 0 0 chr3 123575158 123575180 -36024603 + AT_rich Low_complexity Low_complexity 1 22 0 1 1527 372 314 149 0 chr3 123576365 123576613 -36023170 - Lx8 LINE L1 -2 7471 7187 1 1527 881 321 55 11 chr3 123576807 123577260 -36022523 - Lx8 LINE L1 -356 7117 6645 1 1527 430 302 59 70 chr3 123577879 123578135 -36021648 - Lx8 LINE L1 -1089 6384 6132 1 1527 189 107 0 0 chr3 123578670 123578698 -36021085 + (GAAAA)n Simple_repeat Simple_repeat 1 28 0 1 1527 189 48 45 45 chr3 123579627 123579647 -36020136 + (TTTTG)n Simple_repeat Simple_repeat 2 20 0 1 1527 3319 25 12 42 chr3 123579647 123580071 -36019712 - IAPLTR2a LTR ERVK 0 411 1 1 1527 189 48 45 45 chr3 123580071 123580094 -36019689 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 1 1527 390 316 61 40 chr3 123580872 123581070 -36018713 + MER82 DNA MER2_type 1 202 -451 1 1527 3461 105 2 20 chr3 123581263 123581767 -36018016 + Lx2 LINE L1 6501 6995 -2 1 1527 467 326 93 32 chr3 123581874 123582121 -36017662 - RLTR18 LTR ERVK -322 294 33 1 1527 234 81 0 0 chr3 123582150 123582187 -36017596 + (T)n Simple_repeat Simple_repeat 1 37 0 1 1527 37400 29 6 6 chr3 123582190 123588343 -36011440 - L1Md_T LINE L1 0 6582 440 1 1527 447 233 68 0 chr3 123588818 123588921 -36010862 + MER82 DNA MER2_type 207 316 -337 1 1527 200 184 0 20 chr3 123589217 123589267 -36010516 + CT-rich Low_complexity Low_complexity 4 52 0 1 1527 1208 185 9 0 chr3 123590009 123590220 -36009563 - URR1B DNA MER1_type 0 225 13 1 1527 406 177 40 0 chr3 123590541 123590665 -36009118 + (TA)n Simple_repeat Simple_repeat 1 129 0 1 1527 211 226 27 54 chr3 123590834 123590946 -36008837 + (TTATA)n Simple_repeat Simple_repeat 2 110 0 1 1527 321 322 20 27 chr3 123590946 123591093 -36008690 - Lx9 LINE L1 -266 7378 7233 1 1527 1168 137 43 0 chr3 123591095 123591306 -36008477 + Lx9 LINE L1 6973 7192 -452 1 1527 690 147 17 0 chr3 123591335 123591451 -36008332 + L1_Mm LINE L1 5536 5653 -230 1 1527 22 35 0 0 chr3 123591482 123591511 -36008272 + AT_rich Low_complexity Low_complexity 1 29 0 1 1527 301 205 24 16 chr3 123591766 123591890 -36007893 + CT-rich Low_complexity Low_complexity 4 128 0 1 1527 339 258 52 41 chr3 123591910 123592007 -36007776 - B1F SINE Alu -27 122 25 1 1527 441 278 10 0 chr3 123592069 123592166 -36007617 - PB1 SINE Alu -11 116 19 1 1527 21 36 0 0 chr3 123592685 123592713 -36007070 + AT_rich Low_complexity Low_complexity 1 28 0 1 1527 959 148 57 6 chr3 123593025 123593202 -36006581 - Lx3_Mus LINE L1 -8 7001 6816 1 1527 527 295 76 7 chr3 123593207 123593634 -36006149 - L1MEc LINE L1 -529 5806 5355 1 1527 433 316 83 74 chr3 123593766 123594104 -36005679 - L1MEc LINE L1 -6039 361 21 1 1527 1372 233 73 104 chr3 123595192 123595723 -36004060 - RLTR20B1 LTR ERVK 0 563 49 1 1527 324 0 0 0 chr3 123596439 123596475 -36003308 + (TC)n Simple_repeat Simple_repeat 2 37 0 1 1527 772 288 21 46 chr3 123596814 123597098 -36002685 + RMER15 LTR ERVL 285 561 -14 1 1527 751 310 60 82 chr3 123597795 123598006 -36001777 - RMER5 LTR ERV1 -15 519 311 1 1527 3066 66 10 2 chr3 123598006 123598399 -36001384 - MTB LTR MaLR 0 400 5 1 1527 751 310 60 82 chr3 123598399 123598581 -36001202 - RMER5 LTR ERV1 -224 310 136 1 1527 2240 92 38 6 chr3 123598581 123598898 -36000885 + ORR1A2 LTR MaLR 1 327 0 1 1527 751 310 60 82 chr3 123598898 123598956 -36000827 - RMER5 LTR ERV1 -399 135 77 1 1527 213 132 0 0 chr3 123599392 123599430 -36000353 + (CAT)n Simple_repeat Simple_repeat 2 39 0 1 1527 705 350 26 37 chr3 123599453 123599726 -36000057 - MLT1E3 LTR MaLR -34 590 321 1 190 2952 82 12 14 chr3 123600550 123600972 -35998811 - BGLII LTR ERVK 0 421 1 1 1528 383 230 27 2 chr3 123600972 123601132 -35998651 - BGLII LTR ERVK -112 329 175 1 1528 684 138 9 0 chr3 123601992 123602101 -35997682 - BGLII LTR ERVK 0 421 312 1 1528 489 147 0 0 chr3 123602101 123602176 -35997607 - tRNA-Glu-GAG_ tRNA tRNA 0 75 1 1 1528 26 0 0 0 chr3 123603072 123603098 -35996685 + AT_rich Low_complexity Low_complexity 1 26 0 1 1528 199 360 90 12 chr3 123603396 123603562 -35996221 + MIR SINE MIR 34 212 -50 1 1528 22 0 0 0 chr3 123603812 123603834 -35995949 + AT_rich Low_complexity Low_complexity 1 22 0 1 1528 737 198 86 14 chr3 123603835 123604045 -35995738 - Lx9 LINE L1 -9 7635 7411 1 1528 565 261 62 58 chr3 123604479 123604922 -35994861 + RMER17C LTR ERVK 1 381 -29 1 1528 180 0 0 0 chr3 123605324 123605344 -35994439 + (TG)n Simple_repeat Simple_repeat 1 20 0 1 1528 311 200 130 0 chr3 123605791 123605888 -35993895 - PB1D9 SINE Alu 0 120 3 1 1528 314 318 45 0 chr3 123605941 123606051 -35993732 - B3 SINE B2 -1 215 101 1 1528 396 0 0 0 chr3 123606329 123606373 -35993410 + (TG)n Simple_repeat Simple_repeat 1 44 0 1 1528 1119 68 0 13 chr3 123607302 123607451 -35992332 - B1_Mus2 SINE Alu 0 147 1 1 1528 331 288 207 23 chr3 123607554 123607771 -35992012 - L1M2 LINE L1 -3016 3127 2871 1 1528 450 0 0 0 chr3 123609793 123609843 -35989940 + (CA)n Simple_repeat Simple_repeat 2 51 0 1 1528 183 129 0 0 chr3 123610086 123610117 -35989666 + (A)n Simple_repeat Simple_repeat 1 31 0 1 1528 364 340 6 70 chr3 123610335 123610493 -35989290 + B1F1 SINE Alu 1 148 -1 1 1528 338 236 83 0 chr3 123610640 123610712 -35989071 - B3A SINE B2 -120 78 1 1 1528 207 167 0 0 chr3 123610823 123610865 -35988918 + T-rich Low_complexity Low_complexity 1 42 0 1 1528 1497 300 76 42 chr3 123612408 123613103 -35986680 - Lx8 LINE L1 -2 7471 6753 1 1528 435 256 194 24 chr3 123613100 123613348 -35986435 + Lx6 LINE L1 4901 5190 -687 1 1528 490 73 0 0 chr3 123613406 123613474 -35986309 - L1_Mus3 LINE L1 -208 6430 6363 1 1528 1384 80 30 0 chr3 123613476 123613675 -35986108 + L1_Mus3 LINE L1 6434 6638 0 1 1528 915 303 58 22 chr3 123613682 123614232 -35985551 + Lx6 LINE L1 5284 5813 -67 1 1528 280 306 121 6 chr3 123614281 123614455 -35985328 - L1M2 LINE L1 -1220 4923 4730 1 1528 266 125 21 0 chr3 123614561 123614609 -35985174 + (TA)n Simple_repeat Simple_repeat 1 49 0 1 1528 551 253 91 13 chr3 123614704 123614936 -35984847 - L1_Mur3 LINE L1 -3106 2774 2525 1 1528 405 291 139 41 chr3 123614989 123615984 -35983799 - L1_Mur3 LINE L1 -3506 2374 1283 1 1528 626 206 80 10 chr3 123616137 123616338 -35983445 - Lx9 LINE L1 -4 7640 7426 1 1528 665 159 0 65 chr3 123616441 123616596 -35983187 - L1Md_A LINE L1 -1 6581 6437 1 1528 497 346 94 5 chr3 123617188 123617380 -35982403 + B4A SINE B4 2 210 -82 1 1528 432 0 0 0 chr3 123617458 123617506 -35982277 + (TG)n Simple_repeat Simple_repeat 1 48 0 1 1528 8487 167 63 2 chr3 123617556 123619270 -35980513 - Lx2B LINE L1 -103 5783 3966 1 1528 7536 134 11 10 chr3 123619272 123620469 -35979314 + Lx2B LINE L1 5798 6995 -5 1 1528 801 250 71 11 chr3 123620482 123620765 -35979018 + Lx6 LINE L1 5819 6118 -1342 1 1528 368 171 24 0 chr3 123620769 123620851 -35978932 + Lx6 LINE L1 6666 6749 -711 1 1528 189 0 0 0 chr3 123621492 123621513 -35978270 + (T)n Simple_repeat Simple_repeat 1 21 0 1 1528 288 0 0 0 chr3 123621912 123621944 -35977839 + (T)n Simple_repeat Simple_repeat 1 32 0 1 1528 533 288 50 0 chr3 123622613 123622752 -35977031 - RSINE1 SINE B4 0 165 20 1 1528 234 0 0 0 chr3 123622814 123622840 -35976943 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 1 1528 22 0 0 0 chr3 123624256 123624278 -35975505 + AT_rich Low_complexity Low_complexity 1 22 0 1 1528 25 75 0 0 chr3 123624916 123624969 -35974814 + AT_rich Low_complexity Low_complexity 1 53 0 1 1528 1527 221 121 3 chr3 123625043 123625375 -35974408 + MTD LTR MaLR 49 419 0 1 1528 180 125 0 0 chr3 123625927 123625959 -35973824 + (TTTTC)n Simple_repeat Simple_repeat 4 35 0 1 1528 328 282 72 27 chr3 123627331 123627663 -35972120 + L1_Mur3 LINE L1 1226 1572 -4308 1 1528 13527 13 0 0 chr3 123627672 123629982 -35969801 - L1Md_A LINE L1 0 6582 4272 1 1528 36297 30 1 0 chr3 123629982 123637116 -35962667 - L1Md_T LINE L1 0 6585 1 1 1528 25084 16 0 9 chr3 123637114 123640821 -35958962 - L1Md_A LINE L1 -1598 4285 621 1 1528 320 204 236 13 chr3 123640832 123640981 -35958802 + L1_Mur3 LINE L1 1598 1782 -4065 1 1528 1075 103 7 0 chr3 123641004 123641150 -35958633 - B1_Mus2 SINE Alu 0 147 1 1 1528 659 260 26 0 chr3 123641172 123641326 -35958457 - B3 SINE B2 -6 210 53 1 1528 2210 254 79 75 chr3 123641251 123642149 -35957634 - RMER17B LTR ERVK -56 902 1 1 1528 212 278 19 0 chr3 123642149 123642202 -35957581 - B3A SINE B2 -139 59 6 1 1528 3579 289 85 33 chr3 123642203 123644122 -35955661 + L1_Mur3 LINE L1 1797 3823 -2057 1 1528 735 44 0 0 chr3 123644122 123644213 -35955570 + (CA)n Simple_repeat Simple_repeat 2 92 0 1 1528 324 0 0 0 chr3 123644213 123644248 -35955535 + (GA)n Simple_repeat Simple_repeat 2 37 0 1 1528 3579 289 85 33 chr3 123644248 123644481 -35955302 + L1_Mur3 LINE L1 3824 4060 -1820 1 1528 33356 65 3 2 chr3 123644565 123650726 -35949057 - L1Md_F2 LINE L1 0 6582 413 1 1528 22 0 0 0 chr3 123651098 123651120 -35948663 + AT_rich Low_complexity Low_complexity 1 22 0 2 1528 453 90 0 0 chr3 123651426 123651493 -35948290 + (CA)n Simple_repeat Simple_repeat 1 67 0 2 1528 8504 1 0 0 chr3 123653942 123654874 -35944909 + L1Md_A LINE L1 5651 6582 0 2 1528 642 32 63 0 chr3 123655491 123655586 -35944197 + L1_Mus3 LINE L1 6533 6633 -5 2 1528 835 207 64 46 chr3 123655746 123655964 -35943819 + URR1A DNA MER1_type 5 226 0 2 1528 755 86 17 87 chr3 123656397 123656512 -35943271 - B1_Mus2 SINE Alu 0 150 43 2 1528 255 190 0 0 chr3 123656569 123656627 -35943156 + (TA)n Simple_repeat Simple_repeat 2 59 0 2 1528 211 392 31 0 chr3 123656715 123656812 -35942971 - MIRc SINE MIR -123 145 46 2 1528 297 226 0 0 chr3 123658318 123658402 -35941381 + (TG)n Simple_repeat Simple_repeat 2 85 0 2 1528 372 267 0 79 chr3 123658417 123658531 -35941252 - B4A SINE B4 -186 106 2 2 1528 802 186 25 72 chr3 123659108 123659345 -35940438 - Lx7 LINE L1 -6 7690 7465 2 1528 1463 73 0 0 chr3 123659340 123659544 -35940239 - L1_Mm LINE L1 -1553 4330 4127 2 1528 1012 40 0 0 chr3 123659544 123659668 -35940115 + L1Md_F2 LINE L1 5463 5586 -297 2 1528 8225 34 16 4 chr3 123659668 123660652 -35939131 + L1Md_F2 LINE L1 5587 6582 0 2 1528 1059 246 58 61 chr3 123660655 123661032 -35938751 - Lx7 LINE L1 -202 7494 7119 2 1528 236 396 43 5 chr3 123661351 123661539 -35938244 + Arthur1 DNA Tip100 3345 3539 -408 2 1528 2676 111 22 2 chr3 123661542 123661947 -35937836 + Lx LINE L1 6236 6648 -6 2 1528 1235 260 40 15 chr3 123662107 123662502 -35937281 - Lx8 LINE L1 -194 7279 6875 2 1528 4034 72 36 2 chr3 123662635 123663219 -35936564 + L1_Mus3 LINE L1 6012 6615 -23 2 1528 27294 80 7 3 chr3 123663221 123668412 -35931371 + L1Md_F2 LINE L1 370 5585 -298 2 1528 7423 74 2 6 chr3 123668413 123669401 -35930382 + L1Md_F2 LINE L1 5587 6570 -12 2 1528 4385 58 0 13 chr3 123670849 123671405 -35928378 + L1_Mus1 LINE L1 6019 6567 0 2 1528 402 57 0 0 chr3 123671414 123671467 -35928316 + (GAAA)n Simple_repeat Simple_repeat 3 55 0 2 1528 1344 153 0 73 chr3 123671510 123671770 -35928013 + RMER1B Other Other 743 983 -83 2 1528 443 310 62 39 chr3 123672312 123672490 -35927293 + B3A SINE B2 1 182 -16 2 1528 503 319 110 0 chr3 123672534 123672697 -35927086 - B3A SINE B2 -15 183 3 2 1528 23 0 0 0 chr3 123672850 123672873 -35926910 + AT_rich Low_complexity Low_complexity 1 23 0 2 1528 4768 27 5 3 chr3 123673170 123673735 -35926048 + L1Md_F3 LINE L1 6018 6583 -1 2 1528 27 0 0 0 chr3 123674091 123674118 -35925665 + AT_rich Low_complexity Low_complexity 1 27 0 2 1528 491 351 7 13 chr3 123674499 123674649 -35925134 + RSINE1 SINE B4 2 150 -15 2 1528 387 0 0 0 chr3 123674656 123674699 -35925084 + (TC)n Simple_repeat Simple_repeat 1 43 0 2 1528 342 45 0 0 chr3 123674699 123674742 -35925041 + (CA)n Simple_repeat Simple_repeat 1 44 0 2 1528 438 267 143 0 chr3 123675150 123675311 -35924472 - RMER5 LTR ERV1 0 534 351 2 1528 227 218 0 18 chr3 123675320 123675376 -35924407 - RMER19B LTR ERVK -7 895 841 2 1528 293 267 31 72 chr3 123675375 123675472 -35924311 - B3A SINE B2 -105 93 1 2 1528 333 0 0 0 chr3 123675812 123675849 -35923934 + (TC)n Simple_repeat Simple_repeat 2 38 0 2 1528 249 33 0 0 chr3 123675849 123675878 -35923905 + (TG)n Simple_repeat Simple_repeat 1 30 0 2 1528 574 280 8 0 chr3 123675894 123676019 -35923764 - RSINE1 SINE B4 -38 127 2 2 1528 292 202 110 22 chr3 123676209 123676300 -35923483 - Lx8 LINE L1 -4 7469 7371 2 1528 490 289 93 21 chr3 123677772 123677966 -35921817 + B3 SINE B2 3 210 -6 2 1528 265 57 0 86 chr3 123678437 123678495 -35921288 + (TTTTG)n Simple_repeat Simple_repeat 2 54 0 2 1528 1679 68 5 0 chr3 123678618 123678837 -35920946 - L1_Mus1 LINE L1 -4 6563 6344 2 1528 32 57 0 0 chr3 123679870 123679923 -35919860 + AT_rich Low_complexity Low_complexity 1 53 0 2 1528 263 121 0 17 chr3 123680030 123680089 -35919694 + (TTGG)n Simple_repeat Simple_repeat 2 59 0 2 1528 878 257 149 49 chr3 123680154 123680424 -35919359 - MTD LTR MaLR -14 405 128 2 1528 513 0 0 0 chr3 123680424 123680481 -35919302 + (TAAAA)n Simple_repeat Simple_repeat 3 59 0 2 1528 878 257 149 49 chr3 123680481 123680578 -35919205 - MTD LTR MaLR -292 127 3 2 1528 21 36 0 0 chr3 123680932 123680960 -35918823 + AT_rich Low_complexity Low_complexity 1 28 0 2 1528 632 286 41 26 chr3 123681075 123681106 -35918677 - B3A SINE B2 0 198 167 2 1528 339 25 0 0 chr3 123681106 123681146 -35918637 + (TG)n Simple_repeat Simple_repeat 1 40 0 2 1528 632 286 41 26 chr3 123681146 123681308 -35918475 - B3A SINE B2 -32 166 2 2 1528 339 312 24 80 chr3 123681493 123681734 -35918049 + L1MD LINE L1 4899 5131 -1015 2 1528 1346 88 10 0 chr3 123682499 123682692 -35917091 + L1_Mus1 LINE L1 6373 6567 0 2 1528 359 310 104 6 chr3 123682734 123682929 -35916854 + L1MD LINE L1 5562 5773 -406 2 1528 2093 212 35 14 chr3 123683057 123683573 -35916210 + RLTR11A2 LTR ERVK 1 527 0 2 1528 388 272 36 14 chr3 123684140 123684278 -35915505 + L1M2 LINE L1 5604 5744 -556 2 1528 218 194 14 29 chr3 123684284 123684353 -35915430 + (TATAA)n Simple_repeat Simple_repeat 2 69 0 2 1528 336 307 227 29 chr3 123684596 123684834 -35914949 + B4A SINE B4 2 286 -6 2 1528 213 218 55 0 chr3 123684906 123684961 -35914822 + CT-rich Low_complexity Low_complexity 2 59 0 2 1528 253 267 142 9 chr3 123686048 123686154 -35913629 - MIR SINE MIR -33 235 116 2 1528 441 0 0 0 chr3 123687648 123687697 -35912086 + (TC)n Simple_repeat Simple_repeat 1 49 0 2 1528 396 0 0 0 chr3 123688010 123688054 -35911729 + (CA)n Simple_repeat Simple_repeat 1 44 0 2 1528 13756 133 28 24 chr3 123688146 123691168 -35908615 + L1Md_F LINE L1 387 3426 -2457 2 1528 282 29 0 0 chr3 123691358 123691393 -35908390 + (TG)n Simple_repeat Simple_repeat 2 36 0 2 1528 1678 291 110 5 chr3 123691663 123692219 -35907564 - Lx5 LINE L1 -8 7042 6429 2 1528 691 112 8 8 chr3 123692220 123692337 -35907446 + (TCTCCC)n Simple_repeat Simple_repeat 1 117 0 2 1528 576 0 97 0 chr3 123692340 123692412 -35907371 + MTB LTR MaLR 322 400 0 2 1528 1599 209 78 17 chr3 123692641 123692987 -35906796 - ORR1B2 LTR MaLR 0 367 1 2 1528 305 364 39 0 chr3 123693136 123693265 -35906518 + MLT1A0 LTR MaLR 1 134 -231 2 1528 302 331 68 0 chr3 123693324 123693457 -35906326 + MLT1A0 LTR MaLR 264 405 -3 2 1528 250 246 29 14 chr3 123693461 123693531 -35906252 - Lx7 LINE L1 -1462 6234 6164 2 1528 227 342 16 58 chr3 123693507 123693628 -35906155 + Lx7 LINE L1 7064 7179 -517 2 1528 1073 88 0 0 chr3 123693691 123693828 -35905955 + B1_Mus1 SINE Alu 1 137 -11 2 1528 633 14 0 0 chr3 123693828 123693902 -35905881 + (GA)n Simple_repeat Simple_repeat 1 74 0 2 1528 543 31 0 0 chr3 123694154 123694219 -35905564 + (GA)n Simple_repeat Simple_repeat 2 66 0 2 1528 24 0 0 0 chr3 123694304 123694328 -35905455 + AT_rich Low_complexity Low_complexity 1 24 0 2 1528 233 348 43 17 chr3 123694347 123694464 -35905319 - MTD LTR MaLR -299 120 1 2 1528 22 35 0 0 chr3 123694549 123694578 -35905205 + AT_rich Low_complexity Low_complexity 1 29 0 2 1528 270 0 0 0 chr3 123694748 123694778 -35905005 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 2 1528 1038 161 22 57 chr3 123694956 123695186 -35904597 + L1VL4 LINE L1 465 686 -5616 2 1528 7356 154 17 9 chr3 123695185 123696531 -35903252 + L1_Mur2 LINE L1 3811 5167 -710 2 1528 5600 145 44 14 chr3 123696531 123697516 -35902267 + Lx2B LINE L1 5987 7000 0 2 1528 332 309 0 0 chr3 123697579 123697676 -35902107 + ID_B1 SINE B4 128 224 0 2 1528 294 321 9 90 chr3 123697831 123698020 -35901763 - RMER4B LTR ERVK -280 186 8 2 1528 24 53 0 0 chr3 123698408 123698446 -35901337 + AT_rich Low_complexity Low_complexity 1 38 0 2 1528 320 304 14 9 chr3 123698808 123698945 -35900838 - Lx9 LINE L1 -1720 5924 5751 2 1528 218 167 0 0 chr3 123698976 123699012 -35900771 + (TTG)n Simple_repeat Simple_repeat 1 36 0 2 1528 231 296 11 0 chr3 123699069 123699157 -35900626 - L1M5 LINE L1 -436 5726 5638 2 1528 427 284 39 0 chr3 123699943 123700045 -35899738 + B1F SINE Alu 1 106 -43 2 1528 21 0 0 0 chr3 123700054 123700075 -35899708 + AT_rich Low_complexity Low_complexity 1 21 0 2 1528 1356 218 37 12 chr3 123700075 123700400 -35899383 + Lx7 LINE L1 6064 6396 -1300 2 1528 775 90 19 37 chr3 123700509 123700671 -35899112 + (TCTCC)n Simple_repeat Simple_repeat 5 163 0 2 1528 1039 105 12 6 chr3 123700671 123700844 -35898939 + (TCCCC)n Simple_repeat Simple_repeat 4 177 0 2 1528 2507 48 3 0 chr3 123700850 123701160 -35898623 - L1_Mus1 LINE L1 -10 6557 6247 2 1528 616 140 10 0 chr3 123701164 123701264 -35898519 + L1_Mm LINE L1 4254 4354 -1529 2 1528 1834 186 105 18 chr3 123701287 123701725 -35898058 + Lx7 LINE L1 6397 6872 -824 2 1528 604 211 0 0 chr3 123701730 123701839 -35897944 + RLTR18B LTR ERVK 1 109 -403 2 1528 1437 268 17 11 chr3 123701842 123702189 -35897594 - Lx9 LINE L1 -908 6736 6388 2 1528 2159 209 116 12 chr3 123702183 123702750 -35897033 + Lx9 LINE L1 7018 7643 -1 2 1528 797 259 105 25 chr3 123702844 123703121 -35896662 - MTD LTR MaLR -5 414 116 2 1528 237 98 0 0 chr3 123703184 123703225 -35896558 + (TG)n Simple_repeat Simple_repeat 2 42 0 2 1528 715 296 105 29 chr3 123703739 123704083 -35895700 + ORR1D2 LTR MaLR 1 370 0 2 1528 686 246 0 0 chr3 123704346 123704484 -35895299 - B1_Mur1 SINE Alu -3 146 9 2 1528 495 349 74 28 chr3 123705691 123705974 -35893809 - MLT1A0 LTR MaLR -8 357 62 2 1528 238 257 115 65 chr3 123707887 123708087 -35891696 - L1MA9 LINE L1 0 6312 6103 2 1528 366 123 46 0 chr3 123708334 123708399 -35891384 + RMER1C Other Other 1274 1341 -1 2 1528 309 26 0 0 chr3 123708421 123708459 -35891324 + (TC)n Simple_repeat Simple_repeat 1 38 0 2 1528 420 281 144 29 chr3 123708468 123708816 -35890967 - L1MA9 LINE L1 -498 5793 5406 2 1528 519 13 25 37 chr3 123708824 123708905 -35890878 + (TTTA)n Simple_repeat Simple_repeat 1 80 0 2 1528 2465 78 20 9 chr3 123708905 123709252 -35890531 - L1Md_F2 LINE L1 -35 6547 6197 3 1528 26 0 0 0 chr3 123709603 123709629 -35890154 + AT_rich Low_complexity Low_complexity 1 26 0 3 1528 603 126 0 0 chr3 123710067 123710162 -35889621 + (CAA)n Simple_repeat Simple_repeat 2 96 0 3 1528 31 26 0 0 chr3 123710706 123710744 -35889039 + AT_rich Low_complexity Low_complexity 1 38 0 3 1528 31 26 0 0 chr3 123711078 123711116 -35888667 + AT_rich Low_complexity Low_complexity 1 38 0 3 1528 317 306 0 84 chr3 123711188 123711295 -35888488 - ID_B1 SINE B4 -19 205 108 3 1528 23 0 0 0 chr3 123711490 123711513 -35888270 + AT_rich Low_complexity Low_complexity 1 23 0 3 1528 295 160 27 0 chr3 123711611 123711686 -35888097 + GA-rich Low_complexity Low_complexity 1 77 0 3 1528 432 335 0 16 chr3 123711881 123712063 -35887720 - Lx8 LINE L1 -928 6545 6367 3 1528 1505 238 106 3 chr3 123712085 123712452 -35887331 + MTC LTR MaLR 9 413 -8 3 1528 426 287 16 79 chr3 123712474 123712663 -35887120 - Lx8 LINE L1 -1125 6348 6172 3 1528 261 274 0 0 chr3 123712665 123712760 -35887023 + (TA)n Simple_repeat Simple_repeat 1 95 0 3 1528 416 229 243 33 chr3 123712950 123713279 -35886504 - Lx8 LINE L1 -1553 5920 5520 3 1528 1893 158 2 158 chr3 123713510 123713953 -35885830 + ORR1C1 LTR MaLR 1 374 -4 3 1528 441 0 0 0 chr3 123713980 123714029 -35885754 + (CA)n Simple_repeat Simple_repeat 2 50 0 3 1528 285 327 10 0 chr3 123714064 123714168 -35885615 + Lx9 LINE L1 7309 7413 -231 3 1528 264 355 54 0 chr3 123714818 123715004 -35884779 + HERV16-int LTR ERVL 970 1165 -3831 3 1528 245 302 83 28 chr3 123716098 123716207 -35883576 - L2 LINE L2 -2352 1067 953 3 1528 277 241 26 35 chr3 123716970 123717086 -35882697 + (TA)n Simple_repeat Simple_repeat 1 115 0 3 1528 839 307 150 20 chr3 123717152 123718224 -35881559 - L1M2 LINE L1 -2120 4023 2813 3 1528 268 145 29 14 chr3 123718418 123718488 -35881295 + GA-rich Low_complexity Low_complexity 3 73 0 3 1528 398 318 75 30 chr3 123718510 123718805 -35880978 - L1M2 LINE L1 -3553 2590 2283 3 1528 323 177 16 0 chr3 123718867 123718929 -35880854 + ORR1D2 LTR MaLR 305 367 -3 3 1528 473 323 37 0 chr3 123719171 123719335 -35880448 - ORR1D2 LTR MaLR -99 271 102 3 1528 403 161 32 0 chr3 123720030 123720123 -35879660 + CT-rich Low_complexity Low_complexity 5 100 0 3 1528 775 262 118 76 chr3 123721160 123721515 -35878268 - ORR1D2 LTR MaLR 0 370 1 3 1528 366 271 39 5 chr3 123721596 123721699 -35878084 + MER67A LTR ERV1 204 311 -232 3 1528 465 76 0 0 chr3 123722040 123722106 -35877677 + (CA)n Simple_repeat Simple_repeat 2 67 0 3 1528 4084 63 0 8 chr3 123722217 123722730 -35877053 - L1Md_F2 LINE L1 -12 6570 6062 3 1528 305 345 43 17 chr3 123724696 123724811 -35874972 + MTD LTR MaLR 1 118 -301 3 1528 542 258 158 133 chr3 123725103 123725344 -35874439 - MTD LTR MaLR -51 368 122 3 1528 884 264 86 28 chr3 123725344 123725668 -35874115 - Lx7 LINE L1 -508 7188 6846 3 1528 848 281 31 41 chr3 123725640 123725930 -35873853 - Lx7 LINE L1 -1079 6617 6331 3 1528 1926 286 21 33 chr3 123725994 123726700 -35873083 - Lx7 LINE L1 -1338 6358 5661 3 1528 1116 249 69 4 chr3 123726705 123726967 -35872816 + MTD LTR MaLR 130 408 -11 3 1528 28 29 0 0 chr3 123726979 123727014 -35872769 + AT_rich Low_complexity Low_complexity 1 35 0 3 1528 1837 268 131 55 chr3 123727258 123728321 -35871462 - Lx9 LINE L1 -1 7643 6500 3 1528 225 94 0 0 chr3 123728416 123728448 -35871335 + (TG)n Simple_repeat Simple_repeat 1 32 0 3 1528 448 217 14 0 chr3 123729429 123729567 -35870216 + GA-rich Low_complexity Low_complexity 2 141 0 3 1528 1702 154 25 0 chr3 123729894 123730179 -35869604 + Lx3B LINE L1 6678 6969 -4 3 1528 180 0 26 79 chr3 123730201 123730239 -35869544 + (CAAAAA)n Simple_repeat Simple_repeat 2 37 0 3 1528 560 313 86 48 chr3 123731052 123731425 -35868358 + RMER5 LTR ERV1 148 534 0 3 1528 200 238 0 0 chr3 123731474 123731516 -35868267 + A-rich Low_complexity Low_complexity 1 42 0 3 23 1811 180 77 14 chr3 123731698 123732127 -35867656 + Lx LINE L1 6197 6652 -2 3 1529 810 102 0 0 chr3 123732387 123732505 -35867278 + (TTTC)n Simple_repeat Simple_repeat 3 120 0 3 1529 419 109 16 0 chr3 123732509 123732573 -35867210 - B1_Mur3 SINE Alu -83 66 2 3 1529 387 129 14 28 chr3 123732510 123732582 -35867201 - B4A SINE B4 -142 150 80 3 1529 205 171 0 0 chr3 123732772 123732807 -35866976 + (CACCAT)n Simple_repeat Simple_repeat 6 40 0 3 1529 518 167 9 0 chr3 123732809 123732917 -35866866 + CT-rich Low_complexity Low_complexity 4 112 0 3 1529 315 214 0 0 chr3 123733482 123733552 -35866231 + C-rich Low_complexity Low_complexity 1 70 0 3 1529 537 233 17 15 chr3 123734610 123734728 -35865055 + B1_Mur1 SINE Alu 2 140 -9 3 1529 414 0 0 0 chr3 123734728 123734774 -35865009 + (CAAG)n Simple_repeat Simple_repeat 2 47 0 3 1529 942 42 0 0 chr3 123734774 123734893 -35864890 + (CAAAC)n Simple_repeat Simple_repeat 1 119 0 3 1529 35304 9 19 1 chr3 123735167 123741052 -35858731 + L1Md_A LINE L1 1 5586 -297 3 1529 9063 3 0 0 chr3 123741052 123742100 -35857683 + L1Md_A LINE L1 5587 6582 0 3 1529 36216 19 3 7 chr3 123742109 123747677 -35852106 + L1Md_A LINE L1 47 5586 -297 3 1529 8600 22 1 0 chr3 123747677 123748669 -35851114 + L1Md_A LINE L1 5587 6579 -3 3 1529 668 163 15 7 chr3 123748686 123748822 -35850961 + URR1B DNA MER1_type 89 225 0 3 1529 644 0 13 0 chr3 123750699 123750775 -35849008 + (GA)n Simple_repeat Simple_repeat 2 78 0 3 1529 288 0 0 0 chr3 123751878 123751910 -35847873 + (TC)n Simple_repeat Simple_repeat 2 33 0 3 1529 198 0 0 0 chr3 123751910 123751931 -35847852 + (TG)n Simple_repeat Simple_repeat 1 22 0 3 1529 690 13 0 0 chr3 123751931 123752009 -35847774 + (GA)n Simple_repeat Simple_repeat 1 79 0 3 1529 810 81 0 0 chr3 123752326 123752437 -35847346 + (TTCC)n Simple_repeat Simple_repeat 2 112 0 3 1529 296 285 94 34 chr3 123752437 123752586 -35847197 - MT2A LTR ERVL -375 158 1 3 1529 217 307 19 65 chr3 123753812 123753920 -35845863 - RSINE1 SINE B4 -6 159 57 3 1529 699 241 0 0 chr3 123753988 123754121 -35845662 + B1_Mur1 SINE Alu 17 149 0 3 1529 1276 269 126 27 chr3 123754817 123755367 -35844416 - Lx8 LINE L1 -582 6891 6288 3 1529 354 45 0 0 chr3 123755533 123755577 -35844206 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 3 1529 360 0 0 0 chr3 123755779 123755819 -35843964 + (CA)n Simple_repeat Simple_repeat 2 41 0 3 1529 1382 88 5 5 chr3 123756107 123756312 -35843471 - L1Md_F2 LINE L1 -3 6579 6375 3 1529 2462 83 16 19 chr3 123756480 123756848 -35842935 - L1_Mus2 LINE L1 0 6566 6200 3 1529 921 209 240 58 chr3 123757414 123757739 -35842044 + ORR1C2 LTR MaLR 1 384 0 3 1529 22 0 0 0 chr3 123757905 123757927 -35841856 + AT_rich Low_complexity Low_complexity 1 22 0 3 1529 509 310 74 10 chr3 123758089 123758291 -35841492 - MLT2C2 LTR ERVL -244 220 6 3 1529 371 196 8 30 chr3 123758766 123758865 -35840918 + MTD LTR MaLR 237 419 0 3 1529 4342 86 14 3 chr3 123759607 123760200 -35839583 - Lx3_Mus LINE L1 -8 7001 6403 3 1529 385 136 0 0 chr3 123760200 123760259 -35839524 - Lx3_Mus LINE L1 -1196 5813 5755 3 1529 349 305 105 43 chr3 123760876 123761085 -35838698 - ID_B1 SINE B4 -1 223 2 3 1529 1972 178 58 70 chr3 123761284 123761823 -35837960 - Lx9 LINE L1 -3 7641 7110 3 1529 235 331 162 21 chr3 123762321 123762463 -35837320 - RSINE1 SINE B4 -2 163 2 3 1529 1026 295 119 9 chr3 123762791 123763119 -35836664 + MTD LTR MaLR 56 419 0 3 1529 293 274 0 23 chr3 123763122 123763208 -35836575 + CT-rich Low_complexity Low_complexity 4 87 0 3 1529 2641 164 80 12 chr3 123763227 123763714 -35836069 - RLTR12B LTR ERVK -7 521 2 3 1529 235 353 0 12 chr3 123764767 123764853 -35834930 - Tigger7 DNA MER2_type -16 2475 2391 3 1529 32 75 0 0 chr3 123765091 123765158 -35834625 + AT_rich Low_complexity Low_complexity 1 67 0 3 1529 2091 190 30 7 chr3 123765740 123766280 -35833503 + Lx6 LINE L1 2877 3428 -2452 3 1529 2135 141 55 9 chr3 123766282 123766415 -35833368 + Lx6 LINE L1 4146 4280 -1600 3 1529 371 21 0 20 chr3 123766415 123766464 -35833319 + (CAAAA)n Simple_repeat Simple_repeat 2 49 0 3 1529 2135 141 55 9 chr3 123766464 123766751 -35833032 + Lx6 LINE L1 4281 4583 -1297 3 1529 22 56 0 0 chr3 123766751 123766787 -35832996 + AT_rich Low_complexity Low_complexity 1 36 0 3 1529 5008 53 0 6 chr3 123766817 123767444 -35832339 - L1Md_F2 LINE L1 0 6582 5960 3 1529 3396 242 56 36 chr3 123767445 123768924 -35830859 + Lx6 LINE L1 5483 7031 -19 3 1529 557 286 43 49 chr3 123769241 123769425 -35830358 - B3A SINE B2 0 198 16 3 1529 266 319 32 57 chr3 123769978 123770101 -35829682 + ID_B1 SINE B4 84 203 -21 3 1529 346 300 161 27 chr3 123771941 123772239 -35827544 - L1MEg LINE L1 -4036 2048 1711 3 1529 225 0 0 0 chr3 123772523 123772548 -35827235 + (A)n Simple_repeat Simple_repeat 1 25 0 3 1529 2857 86 10 19 chr3 123772744 123773161 -35826622 + L1_Mus3 LINE L1 6221 6633 -5 3 1529 317 133 0 0 chr3 123773189 123773234 -35826549 + ORR1B1 LTR MaLR 340 384 -10 3 1529 207 0 0 0 chr3 123773234 123773257 -35826526 + (T)n Simple_repeat Simple_repeat 1 23 0 3 1529 3213 65 17 0 chr3 123773269 123773684 -35826099 - L1_Mus2 LINE L1 0 6566 6145 3 1529 501 212 0 0 chr3 123773708 123773821 -35825962 + A-rich Low_complexity Low_complexity 1 113 0 3 1529 247 351 125 0 chr3 123774142 123774310 -35825473 - L2a LINE L2 0 3426 3238 3 1529 270 247 20 30 chr3 123774352 123774452 -35825331 + L1_Rod LINE L1 1907 2005 -3842 3 1529 33 56 0 0 chr3 123775319 123775373 -35824410 + AT_rich Low_complexity Low_complexity 1 54 0 3 1529 553 267 95 29 chr3 123775625 123775868 -35823915 + RLTR15 LTR ERVK 1 259 -100 3 1529 3394 38 0 0 chr3 123775885 123776281 -35823502 + MTA_Mm LTR MaLR 1 396 0 3 1529 254 254 0 0 chr3 123777026 123777081 -35822702 + ID4_ SINE ID 1 55 -28 3 1529 663 152 256 14 chr3 123777600 123777807 -35821976 - Lx9 LINE L1 0 7644 7388 3 1529 592 109 0 21 chr3 123777917 123778011 -35821772 - Lx9 LINE L1 -251 7393 7302 3 1529 262 312 138 30 chr3 123779708 123780108 -35819675 + L1M5 LINE L1 5279 5721 -458 3 1529 540 0 0 0 chr3 123780442 123780502 -35819281 + (CA)n Simple_repeat Simple_repeat 2 61 0 3 1529 311 216 78 22 chr3 123780972 123781062 -35818721 - RMER1C Other Other -2 1340 1246 3 1529 437 279 116 33 chr3 123780991 123781206 -35818577 - Lx8 LINE L1 -5 7468 7236 3 1529 3537 259 75 20 chr3 123781202 123782630 -35817153 - L1_Mur3 LINE L1 -1319 4561 3056 4 1529 369 82 66 0 chr3 123784285 123784346 -35815437 + MERVL_2A-int LTR ERVL 5564 5628 -133 4 1529 354 178 13 40 chr3 123784347 123784423 -35815360 + ORR1A3-int LTR MaLR 567 640 -1323 4 1529 260 81 0 0 chr3 123784423 123784460 -35815323 + MERVL-int LTR ERVL 5448 5484 -1 4 1529 3007 107 12 43 chr3 123784461 123784951 -35814832 + MT2C_Mm LTR ERVL 1 475 0 4 1529 402 21 0 0 chr3 123785651 123785698 -35814085 + (TG)n Simple_repeat Simple_repeat 1 47 0 4 1529 1135 308 125 11 chr3 123785718 123786286 -35813497 + Lx8 LINE L1 6202 6834 -639 4 1529 189 0 0 0 chr3 123786799 123786820 -35812963 + (CA)n Simple_repeat Simple_repeat 2 22 0 4 1529 530 296 57 41 chr3 123787224 123787540 -35812243 + Lx4A LINE L1 5412 5743 -557 4 1529 324 0 0 0 chr3 123787540 123787576 -35812207 + (TG)n Simple_repeat Simple_repeat 2 37 0 4 1529 241 271 43 85 chr3 123787576 123787591 -35812192 + Lx4A LINE L1 5713 5725 -1333 4 1529 312 204 89 13 chr3 123787834 123787957 -35811826 - Lx3C LINE L1 0 6997 6857 4 1529 186 103 0 0 chr3 123788323 123788352 -35811431 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 4 1529 1371 215 129 3 chr3 123788651 123788977 -35810806 + ORR1B2 LTR MaLR 1 367 0 4 1529 471 18 0 0 chr3 123789591 123789647 -35810136 + (CA)n Simple_repeat Simple_repeat 2 57 0 4 1529 563 159 0 165 chr3 123789689 123789847 -35809936 + RLTR23 LTR ERV1 8 139 -291 4 1529 603 343 39 45 chr3 123789862 123790195 -35809588 + RLTR23 LTR ERV1 100 430 0 4 1529 2512 147 17 12 chr3 123791616 123792028 -35807755 + Lx LINE L1 6187 6600 -54 4 1529 303 140 0 0 chr3 123792601 123792651 -35807132 + (TCCC)n Simple_repeat Simple_repeat 4 53 0 4 1529 469 326 126 30 chr3 123793045 123793388 -35806395 - MLT1A1 LTR MaLR -12 396 21 4 1529 2670 60 5 52 chr3 123793556 123793942 -35805841 - L1_Mus2 LINE L1 0 6566 6199 4 1529 517 108 0 41 chr3 123796464 123796561 -35803222 + (TTTTC)n Simple_repeat Simple_repeat 1 93 0 4 1529 216 179 14 43 chr3 123796646 123796716 -35803067 + T-rich Low_complexity Low_complexity 1 68 0 4 1529 395 102 56 11 chr3 123796708 123796731 -35803052 + polypyrimidine Low_complexity Low_complexity 74 95 0 4 1529 1198 80 6 6 chr3 123796731 123796908 -35802875 + (TTTCC)n Simple_repeat Simple_repeat 4 180 0 4 1529 395 102 56 11 chr3 123796908 123796973 -35802810 + CT-rich Low_complexity Low_complexity 4 73 0 4 1529 445 188 0 0 chr3 123797019 123797104 -35802679 - Lx LINE L1 -353 6301 6217 4 1529 1959 121 48 3 chr3 123797124 123797438 -35802345 + Lx LINE L1 6327 6654 0 4 1529 1455 251 56 17 chr3 123797438 123797585 -35802198 + MTD LTR MaLR 50 198 -221 4 1529 183 42 0 0 chr3 123797585 123797609 -35802174 + (CA)n Simple_repeat Simple_repeat 2 25 0 4 1529 1455 251 56 17 chr3 123797609 123797817 -35801966 + MTD LTR MaLR 199 419 0 4 1529 236 284 15 15 chr3 123798020 123798088 -35801695 - B4A SINE B4 -215 77 10 4 1529 701 304 39 25 chr3 123799740 123800101 -35799682 + ORR1D2 LTR MaLR 5 370 0 4 1529 294 260 180 0 chr3 123800102 123800202 -35799581 + ORR1D2-int LTR MaLR 3 120 -1460 4 1529 228 100 0 0 chr3 123800679 123800719 -35799064 + (CA)n Simple_repeat Simple_repeat 2 41 0 4 1529 210 233 0 0 chr3 123800743 123800803 -35798980 + (CA)n Simple_repeat Simple_repeat 1 60 0 4 1529 312 27 0 0 chr3 123800905 123800942 -35798841 + (CA)n Simple_repeat Simple_repeat 1 37 0 4 1529 336 295 61 15 chr3 123801246 123801377 -35798406 - B1_Mur3 SINE Alu 0 149 13 4 1529 235 318 0 0 chr3 123801327 123801393 -35798390 - ID_B1 SINE B4 -81 143 78 4 1529 229 381 48 0 chr3 123802662 123802746 -35797037 - RSINE1 SINE B4 -74 91 4 4 1529 21 36 0 0 chr3 123802928 123802956 -35796827 + AT_rich Low_complexity Low_complexity 1 28 0 4 1529 324 0 0 0 chr3 123803371 123803407 -35796376 + (TG)n Simple_repeat Simple_repeat 1 36 0 4 1529 423 0 0 0 chr3 123803407 123803453 -35796330 + (GA)n Simple_repeat Simple_repeat 1 47 0 4 1529 1040 317 14 47 chr3 123803505 123803849 -35795934 + RMER15 LTR ERVL 225 557 -18 4 1529 21 0 0 0 chr3 123803951 123803972 -35795811 + AT_rich Low_complexity Low_complexity 1 21 0 4 1529 2099 211 5 184 chr3 123804122 123804866 -35794917 + RMER19C LTR ERVK 1 611 0 4 1529 189 0 0 0 chr3 123805355 123805376 -35794407 + (CA)n Simple_repeat Simple_repeat 2 22 0 4 1529 471 347 79 14 chr3 123805463 123805679 -35794104 + B4A SINE B4 8 237 -55 4 1529 216 135 0 0 chr3 123805707 123805744 -35794039 + (TG)n Simple_repeat Simple_repeat 2 38 0 4 1529 222 309 140 12 chr3 123805856 123805993 -35793790 - MIR SINE MIR -19 249 84 4 1529 453 19 0 0 chr3 123806647 123806701 -35793082 + (CAA)n Simple_repeat Simple_repeat 1 54 0 4 1529 309 26 0 0 chr3 123806982 123807020 -35792763 + (CTTG)n Simple_repeat Simple_repeat 1 38 0 4 1529 618 85 0 0 chr3 123807020 123807114 -35792669 + (TTCC)n Simple_repeat Simple_repeat 4 97 0 4 1529 588 65 0 0 chr3 123807105 123807182 -35792601 + (TC)n Simple_repeat Simple_repeat 2 78 0 4 1529 366 214 58 25 chr3 123807182 123807302 -35792481 - Lx3A LINE L1 0 6981 6858 4 1529 2144 121 38 3 chr3 123807299 123807646 -35792137 - Lx3_Mus LINE L1 -354 6655 6297 4 1529 8697 128 17 53 chr3 123807645 123809697 -35790086 + Lx3_Mus LINE L1 4027 5905 -1104 4 1529 261 0 0 0 chr3 123809697 123809726 -35790057 + (CAAA)n Simple_repeat Simple_repeat 4 32 0 4 1529 4221 120 35 12 chr3 123809726 123810100 -35789683 + Lx3_Mus LINE L1 5906 6287 -722 4 1529 22 0 0 0 chr3 123810689 123810711 -35789072 + AT_rich Low_complexity Low_complexity 1 22 0 4 1529 210 91 0 0 chr3 123812045 123812078 -35787705 + (CA)n Simple_repeat Simple_repeat 2 34 0 4 1529 10061 164 36 12 chr3 123812131 123815121 -35784662 - Lx2B LINE L1 -6 6994 3927 4 1529 1887 199 11 0 chr3 123815128 123815499 -35784284 - Lx LINE L1 -3 6651 6277 4 1529 708 74 0 0 chr3 123815520 123815615 -35784168 + (TC)n Simple_repeat Simple_repeat 2 96 0 4 1529 546 139 54 27 chr3 123815615 123815717 -35784066 - MusHAL1 LINE L1 -1049 1663 1556 4 1529 1461 178 20 0 chr3 123815713 123816016 -35783767 - MusHAL1 LINE L1 -2013 699 391 4 1529 496 317 84 71 chr3 123816872 123817239 -35782544 - MLT1E1A LTR MaLR -2 678 307 4 1529 224 100 25 0 chr3 123818028 123818068 -35781715 + (TG)n Simple_repeat Simple_repeat 2 42 0 4 1529 525 333 7 0 chr3 123818081 123818225 -35781558 - B3A SINE B2 -48 150 6 4 1529 235 146 36 18 chr3 123818225 123818281 -35781502 + (TTA)n Simple_repeat Simple_repeat 1 57 0 4 1529 25 0 0 0 chr3 123818283 123818308 -35781475 + AT_rich Low_complexity Low_complexity 1 25 0 4 1529 11737 72 4 1 chr3 123818417 123819992 -35779791 - L1_Mm LINE L1 -765 5118 3539 4 1529 5443 52 3 10 chr3 123819987 123820354 -35779429 + L1_Mm LINE L1 5093 5461 -422 4 1529 2558 87 81 3 chr3 123820354 123820735 -35779048 - RLTR10A LTR ERVK 0 411 1 4 1529 5443 52 3 10 chr3 123820735 123821062 -35778721 + L1_Mm LINE L1 5462 5782 -101 4 1529 3465 32 0 0 chr3 123821066 123821475 -35778308 - L1Md_T LINE L1 0 6582 6174 4 1529 6006 70 8 9 chr3 123821467 123822264 -35777519 + L1Md_F2 LINE L1 5775 6570 -12 4 1529 654 182 62 49 chr3 123822324 123822468 -35777315 + B1_Mus1 SINE Alu 3 148 0 4 1529 405 39 0 0 chr3 123823989 123824040 -35775743 + (CA)n Simple_repeat Simple_repeat 1 51 0 4 1529 1877 259 24 11 chr3 123824156 123824625 -35775158 + Lx7 LINE L1 6807 7281 -415 4 1529 187 31 30 30 chr3 123824673 123824706 -35775077 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 4 1529 295 263 13 0 chr3 123827120 123827196 -35772587 + L1MC1 LINE L1 6222 6298 -35 4 1529 244 345 96 7 chr3 123827349 123827495 -35772288 + MARNA DNA Mariner 385 543 -43 4 1529 263 161 18 0 chr3 123828120 123828176 -35771607 + (CTA)n Simple_repeat Simple_repeat 2 58 0 4 1529 255 318 49 70 chr3 123828232 123828276 -35771507 - Lx9 LINE L1 -101 7372 7329 4 1529 423 0 0 0 chr3 123828276 123828323 -35771460 + (CA)n Simple_repeat Simple_repeat 2 48 0 4 1529 304 299 11 11 chr3 123828323 123828423 -35771360 - Lx9 LINE L1 -187 7457 7360 4 1529 204 40 0 0 chr3 123828633 123828658 -35771125 + (TG)n Simple_repeat Simple_repeat 1 25 0 4 1529 23 54 0 0 chr3 123829784 123829821 -35769962 + AT_rich Low_complexity Low_complexity 1 37 0 4 1529 415 241 51 43 chr3 123829828 123829892 -35769891 + MTC LTR MaLR 300 367 -54 4 1529 938 142 0 28 chr3 123829892 123830073 -35769710 - L1Md_F3 LINE L1 0 6584 6409 4 1529 415 241 51 43 chr3 123830073 123830125 -35769658 + MTC LTR MaLR 368 417 -4 4 1529 491 326 51 4 chr3 123830602 123830866 -35768917 - MLT1A0 LTR MaLR 0 408 126 4 1529 22 0 0 0 chr3 123831069 123831091 -35768692 + AT_rich Low_complexity Low_complexity 1 22 0 4 1529 989 279 58 29 chr3 123831203 123831480 -35768303 + ORR1D2 LTR MaLR 1 285 -85 4 1529 227 325 24 0 chr3 123831519 123831602 -35768181 + MLT2B4 LTR ERVL 276 360 -196 4 1529 798 375 42 13 chr3 123831801 123832179 -35767604 - Zaphod DNA Tip100 -3391 640 252 4 1529 267 103 0 0 chr3 123833350 123833389 -35766394 + (TC)n Simple_repeat Simple_repeat 2 40 0 4 1529 3879 220 38 5 chr3 123833390 123834348 -35765435 - Lx4B LINE L1 -23 6977 5965 4 1529 5340 140 96 17 chr3 123834344 123834917 -35764866 + L1_Mur2 LINE L1 2840 3470 -2407 4 1529 256 48 23 23 chr3 123834917 123834960 -35764823 + (CAAA)n Simple_repeat Simple_repeat 1 43 0 4 1529 5340 140 96 17 chr3 123834960 123835519 -35764264 + L1_Mur2 LINE L1 3471 4062 -1815 4 1529 1067 220 14 27 chr3 123835790 123836010 -35763773 + URR1A DNA MER1_type 1 217 -9 4 1529 24 67 0 0 chr3 123836494 123836539 -35763244 + AT_rich Low_complexity Low_complexity 1 45 0 4 1529 2567 107 21 8 chr3 123837125 123837512 -35762271 + RLTR9E LTR ERVK 1 392 -17 4 1529 3921 92 19 20 chr3 123837512 123838184 -35761599 - RLTR1B-int LTR ERV1 -2310 1388 783 4 1529 1753 134 155 196 chr3 123838317 123839124 -35760659 - RLTR1B-int LTR ERV1 -2522 777 114 4 1529 1443 143 52 0 chr3 123839112 123839342 -35760441 - RLTR1B-int LTR ERV1 -3057 242 1 4 1529 4068 54 20 2 chr3 123839342 123839845 -35759938 - RLTR1B LTR ERV1 0 512 1 4 1529 25 0 0 0 chr3 123839876 123839901 -35759882 + AT_rich Low_complexity Low_complexity 1 25 0 4 1529 204 40 0 0 chr3 123839901 123839926 -35759857 + (CA)n Simple_repeat Simple_repeat 2 26 0 4 1529 202 211 0 0 chr3 123839928 123839966 -35759817 + (TATATG)n Simple_repeat Simple_repeat 5 42 0 4 1529 1599 242 92 3 chr3 123841096 123841465 -35758318 + MTD LTR MaLR 18 419 0 4 1529 509 281 109 14 chr3 123841966 123842145 -35757638 - B3 SINE B2 -1 215 27 4 1529 1042 38 0 0 chr3 123842147 123842280 -35757503 - L1_Mus1 LINE L1 0 6567 6435 4 1529 423 77 0 0 chr3 123842280 123842332 -35757451 + L1_Mus1 LINE L1 6172 6223 -344 5 1529 27 29 0 0 chr3 123842763 123842797 -35756986 + AT_rich Low_complexity Low_complexity 1 34 0 5 1529 271 357 22 97 chr3 123844317 123844584 -35755199 + RLTR18 LTR ERVK 33 279 -337 5 1529 230 115 0 19 chr3 123844879 123844932 -35754851 + (TTTTTG)n Simple_repeat Simple_repeat 3 54 0 5 1529 4493 107 24 21 chr3 123846050 123846728 -35753055 + Lx LINE L1 5968 6647 -7 5 1529 348 288 177 28 chr3 123847319 123847541 -35752242 - L1M2 LINE L1 -3162 2984 2734 5 1529 327 193 0 0 chr3 123848240 123848297 -35751486 - RMER30 DNA MER1_type -134 68 12 5 1529 22 0 0 0 chr3 123849325 123849347 -35750436 + AT_rich Low_complexity Low_complexity 1 22 0 5 1529 241 174 158 30 chr3 123849389 123849490 -35750293 - L1MA5 LINE L1 -72 6228 6115 5 1529 24 32 0 0 chr3 123849616 123849647 -35750136 + AT_rich Low_complexity Low_complexity 1 31 0 5 1529 271 376 55 0 chr3 123850545 123850654 -35749129 - B1F1 SINE Alu -32 117 3 5 1529 8770 181 96 20 chr3 123850797 123851758 -35748025 + Lx6 LINE L1 3626 4624 -1256 5 1529 905 113 6 0 chr3 123851758 123851926 -35747857 + (CA)n Simple_repeat Simple_repeat 2 170 0 5 1529 8770 181 96 20 chr3 123851926 123853014 -35746769 + Lx6 LINE L1 4625 5830 -50 5 1529 296 231 0 0 chr3 123853029 123853094 -35746689 - Lx4B LINE L1 -21 6617 6553 5 1529 6620 97 64 9 chr3 123853106 123854110 -35745673 - Lx LINE L1 0 6654 5596 5 1529 372 235 32 21 chr3 123854118 123854274 -35745509 - Lx4B LINE L1 -110 6948 6788 5 1529 3589 240 109 21 chr3 123854289 123855629 -35744154 + Lx6 LINE L1 5828 7317 -379 5 1529 712 215 3 33 chr3 123855634 123855813 -35743970 + RLTR18 LTR ERVK 8 183 -329 5 1529 330 123 69 17 chr3 123855812 123855870 -35743913 + RLTR18 LTR ERVK 147 207 -409 5 1529 600 285 115 32 chr3 123855883 123856195 -35743588 - RLTR15 LTR ERVK -21 338 1 5 1529 1832 179 64 71 chr3 123856195 123856547 -35743236 + RLTR18 LTR ERVK 205 566 -50 5 1529 1320 8 8 23 chr3 123856547 123856805 -35742978 + (TCTA)n Simple_repeat Simple_repeat 1 253 0 5 1529 1302 132 34 8 chr3 123856805 123857042 -35742741 - Lx3A LINE L1 -10 6971 6729 5 1529 1832 179 64 71 chr3 123857042 123857100 -35742683 + RLTR18 LTR ERVK 567 612 -4 5 1529 22 35 0 0 chr3 123857170 123857199 -35742584 + AT_rich Low_complexity Low_complexity 1 29 0 5 1529 414 0 0 0 chr3 123857199 123857245 -35742538 + (CA)n Simple_repeat Simple_repeat 2 47 0 5 1529 1002 212 108 53 chr3 123857249 123857404 -35742379 + Lx6 LINE L1 7356 7523 -173 5 1529 207 0 0 0 chr3 123857404 123857427 -35742356 + (TTTG)n Simple_repeat Simple_repeat 4 26 0 5 1529 1002 212 108 53 chr3 123857427 123857594 -35742189 + Lx6 LINE L1 7524 7695 -1 5 1529 26 64 0 0 chr3 123857609 123857656 -35742127 + AT_rich Low_complexity Low_complexity 1 47 0 5 1529 1645 243 35 8 chr3 123857956 123858329 -35741454 + MTD LTR MaLR 34 416 -3 5 1529 302 0 26 0 chr3 123858329 123858367 -35741416 + (CA)n Simple_repeat Simple_repeat 2 40 0 5 1529 22 0 0 0 chr3 123858540 123858562 -35741221 + AT_rich Low_complexity Low_complexity 1 22 0 5 1529 22 56 0 0 chr3 123858580 123858616 -35741167 + AT_rich Low_complexity Low_complexity 1 36 0 5 1529 27 0 0 0 chr3 123858633 123858660 -35741123 + AT_rich Low_complexity Low_complexity 1 27 0 5 1529 41 58 0 0 chr3 123859611 123859680 -35740103 + AT_rich Low_complexity Low_complexity 1 69 0 5 1529 287 299 18 41 chr3 123860162 123860333 -35739450 + ORR1B1-int LTR MaLR 588 754 -755 5 1529 1096 29 0 14 chr3 123860235 123860375 -35739408 + B1_Mus1 SINE Alu 11 148 0 5 1529 213 39 0 0 chr3 123860415 123860441 -35739342 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 5 1529 267 31 0 0 chr3 123861030 123861062 -35738721 + (TG)n Simple_repeat Simple_repeat 1 32 0 5 1529 551 314 30 45 chr3 123861321 123861521 -35738262 + B3A SINE B2 1 197 -1 5 1529 180 0 0 0 chr3 123862730 123862750 -35737033 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 5 1530 41157 5 0 0 chr3 123863467 123869626 -35730157 - L1Md_A LINE L1 -1 6581 422 5 1530 269 277 0 74 chr3 123870198 123870306 -35729477 + L1_Rod LINE L1 2384 2484 -3363 5 1530 3361 62 0 11 chr3 123870306 123870745 -35729038 - L1Md_F2 LINE L1 0 6582 6149 5 1530 688 259 35 57 chr3 123870751 123870980 -35728803 + RMER15 LTR ERVL 8 231 -344 5 1530 333 0 0 0 chr3 123871031 123871068 -35728715 + (CAAAA)n Simple_repeat Simple_repeat 4 40 0 5 1530 1533 258 15 0 chr3 123871075 123871409 -35728374 + RMER15 LTR ERVL 237 575 0 5 1530 814 277 42 57 chr3 123871411 123871654 -35728129 + L1_Rod LINE L1 2503 2735 -3112 5 1530 303 85 0 0 chr3 123871654 123871701 -35728082 + (CA)n Simple_repeat Simple_repeat 2 48 0 5 1530 814 277 42 57 chr3 123871701 123871985 -35727798 + L1_Rod LINE L1 2736 3022 -2825 5 1530 466 171 0 0 chr3 123871996 123872072 -35727711 - B3 SINE B2 -133 83 8 5 1530 5454 188 27 8 chr3 123872218 123872646 -35727137 + Lx2 LINE L1 4802 5228 -655 5 1530 3403 35 2 0 chr3 123872646 123873041 -35726742 + MTA_Mm LTR MaLR 1 396 0 5 1530 8608 139 32 8 chr3 123873041 123874773 -35725010 + Lx2 LINE L1 5229 6997 0 5 1530 1939 279 147 47 chr3 123874773 123876279 -35723504 + L1_Rod LINE L1 3197 4852 -995 5 1530 1108 204 124 36 chr3 123876277 123876633 -35723150 + L1_Rod LINE L1 5322 5708 -139 5 1530 416 324 148 20 chr3 123876740 123877067 -35722716 + ORR1D-int LTR MaLR 1041 1534 -46 5 1530 273 98 0 0 chr3 123878419 123878460 -35721323 + (TTTTA)n Simple_repeat Simple_repeat 1 41 0 5 1530 3560 131 36 9 chr3 123879104 123879682 -35720101 - Lx LINE L1 -8 6646 6053 5 1530 570 24 48 0 chr3 123879835 123879918 -35719865 + (TAGA)n Simple_repeat Simple_repeat 4 90 0 5 1530 710 125 28 0 chr3 123879930 123880074 -35719709 + GA-rich Low_complexity Low_complexity 1 148 0 5 1530 411 21 0 0 chr3 123880458 123880506 -35719277 + (TAGA)n Simple_repeat Simple_repeat 3 50 0 5 1530 302 125 50 0 chr3 123880518 123880598 -35719185 + GA-rich Low_complexity Low_complexity 1 84 0 5 1530 1239 149 165 0 chr3 123880723 123880978 -35718805 + ORR1A3-int LTR MaLR 6 302 -1661 5 1530 1163 188 27 14 chr3 123881212 123881433 -35718350 - URR1B DNA MER1_type -1 224 1 5 1530 441 0 0 0 chr3 123882158 123882207 -35717576 + (CA)n Simple_repeat Simple_repeat 2 50 0 5 1530 4389 99 3 0 chr3 123883102 123883719 -35716064 - L1_Mus1 LINE L1 0 6567 5949 5 1530 4033 73 0 2 chr3 123883719 123884254 -35715529 + L1_Mm LINE L1 4449 4982 -901 5 1530 21 0 0 0 chr3 123884490 123884511 -35715272 + AT_rich Low_complexity Low_complexity 1 21 0 5 1530 24558 83 9 7 chr3 123885634 123890716 -35709067 + L1Md_F2 LINE L1 487 5586 -297 5 1530 7516 73 5 5 chr3 123890717 123891702 -35708081 + L1Md_F2 LINE L1 5588 6572 -10 5 1530 342 0 0 0 chr3 123891765 123891803 -35707980 + (TA)n Simple_repeat Simple_repeat 2 39 0 5 1530 630 39 0 0 chr3 123892172 123892249 -35707534 + (GGA)n Simple_repeat Simple_repeat 3 79 0 5 1530 214 319 42 0 chr3 123892332 123892404 -35707379 + ID SINE ID 1 75 -149 5 1530 382 245 28 0 chr3 123892614 123892720 -35707063 - Lx6 LINE L1 -26 7434 7326 5 1530 225 0 0 0 chr3 123893006 123893031 -35706752 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 5 1530 1534 329 76 38 chr3 123893046 123893926 -35705857 - Lx8 LINE L1 -74 7399 6486 5 1530 234 321 103 60 chr3 123894013 123894129 -35705654 + PB1 SINE Alu 1 121 -6 5 1530 456 351 65 7 chr3 123894962 123895117 -35704666 + RSINE1 SINE B4 2 165 0 5 1530 763 179 47 165 chr3 123896402 123896743 -35703040 + RLTRETN_Mm LTR ERVK 9 400 -9 5 1530 19089 186 42 27 chr3 123896754 123900469 -35699314 + ETnERV2-int LTR ERVK 2 4193 -3213 5 1530 185 243 160 13 chr3 123900469 123900544 -35699239 + L4 LINE RTE 311 396 -1633 5 1530 19089 186 42 27 chr3 123900544 123903209 -35696574 + ETnERV2-int LTR ERVK 4194 7203 -203 5 1530 502 210 118 7 chr3 123903209 123903353 -35696430 + RLTR13B1 LTR ERVK 153 312 -581 5 1530 333 126 14 50 chr3 123903358 123903438 -35696345 + ETnERV-int LTR ERVK 3118 3181 -133 5 1530 228 233 0 0 chr3 123903438 123903481 -35696302 + RLTR13B1 LTR ERVK 495 537 -365 5 1530 413 120 25 74 chr3 123903482 123903563 -35696220 + ETnERV2-int LTR ERVK 7330 7406 0 5 1530 772 191 42 159 chr3 123903570 123903930 -35695853 + RLTRETN_Mm LTR ERVK 7 409 0 5 1530 337 353 119 23 chr3 123904255 123904516 -35695267 + MLT1E2 LTR MaLR 342 627 0 5 1530 268 211 101 8 chr3 123905046 123905175 -35694608 - Lx9 LINE L1 -1 7643 7503 5 1530 816 88 0 0 chr3 123905220 123905334 -35694449 + (TTCC)n Simple_repeat Simple_repeat 3 116 0 5 1530 1183 341 12 21 chr3 123905386 123905899 -35693884 - Lx9 LINE L1 -333 7311 6804 5 1530 243 214 112 0 chr3 123905923 123906012 -35693771 + Lx5 LINE L1 6952 7050 0 5 1530 291 252 70 26 chr3 123907916 123908030 -35691753 - PB1D9 SINE Alu 0 120 2 5 1530 594 28 0 0 chr3 123909797 123909869 -35689914 + (TC)n Simple_repeat Simple_repeat 2 73 0 5 1530 23 33 0 0 chr3 123909947 123909977 -35689806 + AT_rich Low_complexity Low_complexity 1 30 0 5 1530 22 35 0 0 chr3 123910396 123910425 -35689358 + AT_rich Low_complexity Low_complexity 1 29 0 5 1530 1302 290 63 59 chr3 123910830 123911318 -35688465 - RMER15 LTR ERVL 0 575 86 5 1530 254 307 0 39 chr3 123911385 123911463 -35688320 - RMER15 LTR ERVL -500 75 1 5 1530 29 28 0 0 chr3 123911935 123911971 -35687812 + AT_rich Low_complexity Low_complexity 1 36 0 5 1530 1100 95 62 0 chr3 123912015 123912194 -35687589 - Lx3_Mus LINE L1 0 7009 6820 5 1530 3678 143 12 19 chr3 123912230 123912880 -35686903 + Lx4A LINE L1 5767 6412 -646 5 1530 1041 32 0 0 chr3 123913216 123913341 -35686442 + (GAA)n Simple_repeat Simple_repeat 2 126 0 5 1530 993 61 0 15 chr3 123913460 123913594 -35686189 + B1_Mus2 SINE Alu 16 147 0 5 1530 377 129 0 14 chr3 123913594 123913665 -35686118 + (CAAAA)n Simple_repeat Simple_repeat 1 70 0 5 1530 259 333 8 0 chr3 123913670 123913796 -35685987 + L1M3 LINE L1 5328 5454 -726 5 1530 890 211 4 4 chr3 123913796 123914042 -35685741 + GA-rich Low_complexity Low_complexity 1 246 0 5 1530 282 180 0 0 chr3 123914053 123914114 -35685669 + GA-rich Low_complexity Low_complexity 3 63 0 5 1530 688 253 29 29 chr3 123914146 123914317 -35685466 + B3 SINE B2 1 171 -45 5 1530 23 0 0 0 chr3 123914411 123914434 -35685349 + AT_rich Low_complexity Low_complexity 1 23 0 5 1530 973 93 29 0 chr3 123914526 123914665 -35685118 - B1_Mus1 SINE Alu -5 143 1 5 1530 718 261 103 122 chr3 123914747 123915240 -35684543 - RLTR40 LTR ERVK -176 641 158 5 1530 3762 68 6 0 chr3 123915251 123915738 -35684045 - L1_Mus1 LINE L1 -2 6565 6076 5 1530 249 264 39 117 chr3 123915821 123915924 -35683859 - RLTR40 LTR ERVK -648 169 75 5 1530 1343 256 82 3 chr3 123915973 123916314 -35683469 + ORR1D1 LTR MaLR 2 369 -5 5 1530 342 221 43 9 chr3 123916449 123916559 -35683224 + B1_Mus1 SINE Alu 14 143 -6 5 1530 230 296 110 16 chr3 123916559 123916576 -35683207 + B4A SINE B4 99 237 -55 5 1530 210 111 22 22 chr3 123916784 123916830 -35682953 + T-rich Low_complexity Low_complexity 5 50 0 5 1530 278 309 111 60 chr3 123917028 123917262 -35682521 - MER67C LTR ERV1 -333 378 133 5 1530 444 225 89 9 chr3 123918518 123918630 -35681153 - MTEa LTR MaLR -258 121 1 5 1530 234 261 0 14 chr3 123918693 123918763 -35681020 + CT-rich Low_complexity Low_complexity 1 69 0 5 1530 270 0 0 0 chr3 123918825 123918855 -35680928 + (T)n Simple_repeat Simple_repeat 1 30 0 6 1530 252 278 19 0 chr3 123919304 123919358 -35680425 + ORR1E LTR MaLR 1 55 -304 6 1530 1623 197 34 42 chr3 123919962 123920384 -35679399 - ORR1B2 LTR MaLR -6 388 2 6 1530 34 42 0 0 chr3 123920565 123920613 -35679170 + AT_rich Low_complexity Low_complexity 1 48 0 6 1530 324 264 86 23 chr3 123921193 123921321 -35678462 - MTE-int LTR MaLR -2 1578 1443 6 1530 262 265 59 24 chr3 123921397 123921482 -35678301 + ID_B1 SINE B4 137 224 0 6 1530 268 233 105 40 chr3 123921407 123921483 -35678300 + B1_Mur1 SINE Alu 69 149 0 6 1530 435 374 54 18 chr3 123921479 123921702 -35678081 - MTE-int LTR MaLR -217 1363 1133 6 1530 736 297 65 56 chr3 123921811 123921899 -35677884 - MTE-int LTR MaLR -100 1480 1395 6 1530 3604 134 11 25 chr3 123921899 123921915 -35677868 - Lx3A LINE L1 0 6981 6967 6 1530 486 0 0 0 chr3 123921915 123921969 -35677814 + (TCTA)n Simple_repeat Simple_repeat 2 55 0 6 1530 3604 134 11 25 chr3 123921969 123922582 -35677201 - Lx3A LINE L1 -15 6966 6361 6 1530 736 297 65 56 chr3 123922582 123922817 -35676966 - MTE-int LTR MaLR -186 1394 1156 6 1530 397 255 92 32 chr3 123922802 123922945 -35676838 + B1_Mur2 SINE Alu 5 149 0 6 1530 396 360 60 37 chr3 123923066 123923282 -35676501 + MTE-int LTR MaLR 788 1008 -572 6 1530 28 48 0 0 chr3 123923389 123923431 -35676352 + AT_rich Low_complexity Low_complexity 1 42 0 6 1530 841 199 118 10 chr3 123923708 123923911 -35675872 + URR1A DNA MER1_type 2 226 0 6 1530 1042 299 96 6 chr3 123924279 123924592 -35675191 + MTE2b LTR MaLR 39 379 0 6 1530 622 264 39 49 chr3 123924592 123924707 -35675076 + MTE2b-int LTR MaLR 1 114 -1466 6 1530 711 69 0 8 chr3 123924707 123924824 -35674959 + L1Md_F2 LINE L1 6465 6580 -2 6 1530 622 264 39 49 chr3 123924824 123924911 -35674872 + MTE2b-int LTR MaLR 115 201 -1379 6 1530 4110 138 26 2 chr3 123925237 123925881 -35673902 - Lx3_Mus LINE L1 -57 6952 6293 6 1530 6760 91 14 19 chr3 123925892 123926886 -35672897 - L1_Mur1 LINE L1 0 5886 4898 6 1530 1270 269 71 10 chr3 123926887 123927282 -35672501 + MTD LTR MaLR 1 419 0 6 1530 216 221 30 40 chr3 123927407 123927506 -35672277 + A-rich Low_complexity Low_complexity 2 99 0 6 1530 231 36 0 0 chr3 123927664 123927692 -35672091 + (A)n Simple_repeat Simple_repeat 1 28 0 6 1530 1105 141 11 5 chr3 123928567 123928752 -35671031 + URR1A DNA MER1_type 40 225 -1 6 1530 861 202 44 10 chr3 123928986 123929191 -35670592 + B3 SINE B2 5 216 0 6 1530 198 0 0 0 chr3 123931700 123931722 -35668061 + (A)n Simple_repeat Simple_repeat 1 22 0 6 1530 205 211 0 17 chr3 123932149 123932207 -35667576 + (TATAA)n Simple_repeat Simple_repeat 1 57 0 6 1530 2292 194 7 20 chr3 123932532 123932979 -35666804 - Lx2B LINE L1 -2 6998 6558 6 1530 366 23 0 0 chr3 123933466 123933509 -35666274 + (TTA)n Simple_repeat Simple_repeat 3 45 0 6 1530 2671 220 91 26 chr3 123933511 123934212 -35665571 - Lx3_Mus LINE L1 -12 6997 6251 6 1530 298 286 83 6 chr3 123935024 123935193 -35664590 + L1M3 LINE L1 2698 2879 -3261 6 1530 446 104 13 0 chr3 123935235 123935312 -35664471 - L1Md_F2 LINE L1 -1 6581 6504 6 1530 417 156 0 0 chr3 123936695 123936772 -35663011 + CT-rich Low_complexity Low_complexity 2 78 0 6 1530 216 0 0 0 chr3 123936932 123936956 -35662827 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 6 1530 27 49 0 0 chr3 123937484 123937525 -35662258 + AT_rich Low_complexity Low_complexity 1 41 0 6 1530 1551 62 0 32 chr3 123938476 123938693 -35661090 - L1_Mus2 LINE L1 0 6566 6357 6 1530 1771 202 109 15 chr3 123938769 123939270 -35660513 - Lx3C LINE L1 -15 6982 6412 6 1530 1745 152 43 0 chr3 123939271 123939574 -35660209 + Lx3C LINE L1 5672 5987 -989 6 1530 21 57 0 0 chr3 123939644 123939679 -35660104 + AT_rich Low_complexity Low_complexity 1 35 0 6 1530 613 318 49 82 chr3 123940248 123940560 -35659223 + MTEb LTR MaLR 12 318 -61 6 1530 2943 26 9 0 chr3 123940560 123940903 -35658880 + ORR1A0 LTR MaLR 1 346 0 6 1530 14104 52 6 1 chr3 123940903 123942686 -35657097 + ORR1A0-int LTR MaLR 1 1792 0 6 1530 2997 18 9 0 chr3 123942686 123943029 -35656754 + ORR1A0 LTR MaLR 1 346 0 6 1530 613 318 49 82 chr3 123943029 123943080 -35656703 + MTEb LTR MaLR 319 363 -16 6 1530 1563 292 126 53 chr3 123943099 123943663 -35656120 - Lx8 LINE L1 -179 7294 6689 6 1530 2144 69 0 0 chr3 123943663 123943938 -35655845 + L1_Mus1 LINE L1 6292 6566 -1 6 1530 1563 292 126 53 chr3 123943938 123944159 -35655624 - Lx8 LINE L1 -785 6688 6452 6 1530 302 376 88 88 chr3 123945028 123945392 -35654391 + MLT1A LTR MaLR 5 368 -6 6 1530 7725 71 26 0 chr3 123945457 123946591 -35653192 + L1_Mus3 LINE L1 5525 6638 0 6 1530 341 359 53 32 chr3 123948165 123948355 -35651428 - RMER15 LTR ERVL -46 529 336 6 1530 2606 54 3 0 chr3 123948863 123949199 -35650584 - IAPLTR4 LTR ERVK -8 337 1 6 1530 2122 235 65 52 chr3 123949242 123949776 -35650007 + RLTR40 LTR ERVK 1 543 -274 6 1530 1419 50 0 0 chr3 123949776 123949956 -35649827 + (GA)n Simple_repeat Simple_repeat 1 180 0 6 1530 2122 235 65 52 chr3 123949956 123950062 -35649721 + RLTR40 LTR ERVK 544 650 -167 6 1530 255 336 25 0 chr3 123950219 123950341 -35649442 - L1MB4 LINE L1 -5937 670 546 6 1530 396 0 0 0 chr3 123951691 123951735 -35648048 + (TTA)n Simple_repeat Simple_repeat 2 45 0 6 1530 444 37 0 0 chr3 123951875 123951929 -35647854 + (GA)n Simple_repeat Simple_repeat 2 55 0 6 1530 264 30 0 0 chr3 123952653 123952686 -35647097 + (CA)n Simple_repeat Simple_repeat 2 34 0 6 1530 252 59 0 0 chr3 123952686 123952720 -35647063 + (GA)n Simple_repeat Simple_repeat 1 34 0 6 1530 22 70 0 0 chr3 123953038 123953081 -35646702 + AT_rich Low_complexity Low_complexity 1 43 0 6 1530 360 64 0 0 chr3 123953227 123953274 -35646509 + (TA)n Simple_repeat Simple_repeat 2 48 0 6 1530 4672 162 6 13 chr3 123953427 123954216 -35645567 + Lx2B LINE L1 6215 6998 -2 6 1530 818 250 74 77 chr3 123954382 123954626 -35645157 - Lx9 LINE L1 -1024 6620 6378 6 1530 189 0 0 0 chr3 123954626 123954647 -35645136 + (TGGG)n Simple_repeat Simple_repeat 3 23 0 6 1530 818 250 74 77 chr3 123954647 123954701 -35645082 - Lx9 LINE L1 -1267 6377 6323 6 1530 1484 238 178 42 chr3 123954779 123955675 -35644108 + Lx9 LINE L1 6628 7644 0 6 1530 25 0 0 0 chr3 123955675 123955700 -35644083 + AT_rich Low_complexity Low_complexity 1 25 0 6 1530 468 0 0 0 chr3 123955723 123955775 -35644008 + (TA)n Simple_repeat Simple_repeat 2 53 0 6 1530 895 133 0 7 chr3 123955968 123956104 -35643679 + B1_Mus1 SINE Alu 4 138 -10 6 1530 252 86 0 0 chr3 123956104 123956139 -35643644 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 6 1530 1678 70 13 0 chr3 123956297 123956524 -35643259 + L1Md_F2 LINE L1 6352 6581 -1 6 1530 7481 64 0 51 chr3 123956543 123957580 -35642203 - L1Md_F2 LINE L1 -12 6570 5587 6 1530 230 211 28 0 chr3 123957596 123957667 -35642116 - Lx9 LINE L1 -153 7491 7419 6 1530 241 226 0 0 chr3 123957667 123957720 -35642063 + (TG)n Simple_repeat Simple_repeat 1 53 0 6 1530 1016 312 18 57 chr3 123957720 123958212 -35641571 - Lx9 LINE L1 -213 7431 6959 6 1530 429 54 0 0 chr3 123958707 123958763 -35641020 + (TG)n Simple_repeat Simple_repeat 2 57 0 6 1530 4351 18 0 0 chr3 123958763 123959253 -35640530 + MT2_Mm LTR ERVL 4 493 0 6 1530 357 294 26 7 chr3 123959253 123959407 -35640376 + (TG)n Simple_repeat Simple_repeat 1 157 0 6 1530 341 316 142 64 chr3 123959427 123959660 -35640123 - B4A SINE B4 0 292 42 6 1530 2659 108 15 3 chr3 123959661 123960050 -35639733 + L1_Mus3 LINE L1 6239 6632 -6 6 1530 305 149 15 0 chr3 123960094 123960161 -35639622 + CT-rich Low_complexity Low_complexity 1 68 0 6 1530 255 316 59 42 chr3 123960201 123960320 -35639463 - RLTR11A2 LTR ERVK -406 121 1 6 1530 687 192 198 0 chr3 123960459 123960646 -35639137 + URR1A DNA MER1_type 1 224 -2 6 1530 477 0 0 0 chr3 123961407 123961460 -35638323 + (CATAC)n Simple_repeat Simple_repeat 2 54 0 6 1530 234 0 0 0 chr3 123962791 123962817 -35636966 + (TG)n Simple_repeat Simple_repeat 2 27 0 6 1530 21 57 0 0 chr3 123963167 123963202 -35636581 + AT_rich Low_complexity Low_complexity 1 35 0 6 1530 248 312 31 20 chr3 123963720 123963818 -35635965 + MER90 LTR ERV1 5 103 -472 6 1530 255 222 0 0 chr3 123964604 123964658 -35635125 + (CATATA)n Simple_repeat Simple_repeat 1 54 0 6 1530 22 0 0 0 chr3 123964968 123964990 -35634793 + AT_rich Low_complexity Low_complexity 1 22 0 6 1530 330 340 100 51 chr3 123965943 123966432 -35633351 + Lx8 LINE L1 6960 7472 -1 6 1530 25 65 0 0 chr3 123966621 123966667 -35633116 + AT_rich Low_complexity Low_complexity 1 46 0 6 1530 1059 279 128 81 chr3 123967298 123968055 -35631728 - Lx9 LINE L1 0 7644 6852 6 1530 1333 125 5 5 chr3 123968090 123968299 -35631484 + RMER6C LTR ERVK 482 690 0 6 1530 315 326 46 26 chr3 123968459 123968654 -35631129 + Lx8 LINE L1 7266 7464 -9 6 1530 207 0 0 0 chr3 123968666 123968689 -35631094 + (TA)n Simple_repeat Simple_repeat 1 23 0 6 1530 209 297 0 0 chr3 123968811 123968875 -35630908 + (TA)n Simple_repeat Simple_repeat 2 65 0 6 1530 822 251 45 32 chr3 123969060 123969373 -35630410 - RLTR15 LTR ERVK -40 319 3 6 1530 338 305 58 35 chr3 123969560 123969733 -35630050 + MER77 LTR ERVL 406 582 -25 6 1530 1054 83 14 7 chr3 123971231 123971377 -35628406 - B1_Mus1 SINE Alu 0 148 2 6 1530 30 0 0 0 chr3 123971384 123971414 -35628369 + AT_rich Low_complexity Low_complexity 1 30 0 6 1530 769 196 57 5 chr3 123971563 123971773 -35628010 + Lx9 LINE L1 7401 7621 -23 6 1530 253 316 51 34 chr3 123972380 123972498 -35627285 + PB1D7 SINE Alu 1 120 0 6 1530 582 249 72 2 chr3 123972817 123972995 -35626788 - B3 SINE B2 0 216 14 6 1530 207 0 0 0 chr3 123973101 123973124 -35626659 + (CA)n Simple_repeat Simple_repeat 2 24 0 6 1530 495 48 0 0 chr3 123973128 123973190 -35626593 + (TA)n Simple_repeat Simple_repeat 1 62 0 6 1530 26 30 0 0 chr3 123975246 123975279 -35624504 + AT_rich Low_complexity Low_complexity 1 33 0 6 1530 514 292 34 0 chr3 123975774 123975921 -35623862 + RSINE1 SINE B4 11 162 -3 6 1530 333 128 167 0 chr3 123975965 123976043 -35623740 - Lx7 LINE L1 -1 7695 7605 6 1530 458 283 52 29 chr3 123976062 123976316 -35623467 - L1MA9 LINE L1 -383 5929 5634 7 1530 314 188 68 19 chr3 123976619 123976722 -35623061 - Lx9 LINE L1 -4 7640 7533 7 1530 468 0 0 0 chr3 123976731 123976783 -35623000 + (TA)n Simple_repeat Simple_repeat 2 53 0 7 1530 924 305 80 24 chr3 123977060 123977399 -35622384 + MTEa LTR MaLR 1 358 -21 7 1530 2668 72 11 5 chr3 123978146 123978547 -35621236 - L1_Mus3 LINE L1 0 6638 6248 7 1530 238 213 16 32 chr3 123978886 123978949 -35620834 - Lx9 LINE L1 -1754 5890 5829 7 1530 207 0 0 0 chr3 123979144 123979167 -35620616 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 7 1530 474 288 31 59 chr3 123979858 123980020 -35619763 - B3A SINE B2 -13 203 45 7 1530 185 0 40 0 chr3 123980178 123980203 -35619580 + (TTTG)n Simple_repeat Simple_repeat 1 26 0 7 1530 360 0 0 0 chr3 123980221 123980261 -35619522 + (TTTA)n Simple_repeat Simple_repeat 1 40 0 7 1530 5228 142 21 10 chr3 123980261 123981127 -35618656 - Lx2 LINE L1 -27 6970 6096 7 1530 441 0 0 0 chr3 123981157 123981206 -35618577 + (TC)n Simple_repeat Simple_repeat 2 50 0 7 1530 315 0 0 0 chr3 123981206 123981240 -35618543 + (TG)n Simple_repeat Simple_repeat 2 36 0 7 1530 459 0 0 0 chr3 123981544 123981595 -35618188 + (TTTC)n Simple_repeat Simple_repeat 2 52 0 7 1530 597 258 112 5 chr3 123981595 123981782 -35618001 + MTD LTR MaLR 15 221 -198 7 1530 2631 260 78 39 chr3 123983463 123984385 -35615398 + Lx9 LINE L1 6660 7617 -27 7 1530 253 231 0 15 chr3 123984432 123984498 -35615285 + (TATG)n Simple_repeat Simple_repeat 2 66 0 7 1530 35289 45 0 3 chr3 123985112 123990322 -35609461 + L1Md_T LINE L1 298 5589 -297 7 1530 8379 36 0 0 chr3 123990322 123991318 -35608465 + L1Md_T LINE L1 5590 6585 0 7 1530 21 0 0 0 chr3 123991596 123991617 -35608166 + AT_rich Low_complexity Low_complexity 1 21 0 7 1530 659 167 18 6 chr3 123992612 123992775 -35607008 + (TA)n Simple_repeat Simple_repeat 1 165 0 7 1530 447 184 0 0 chr3 123992853 123992940 -35606843 + (CATA)n Simple_repeat Simple_repeat 2 88 0 7 1530 1100 239 152 42 chr3 123993176 123993530 -35606253 - MTB_Mm LTR MaLR 0 407 15 7 1530 28 0 0 0 chr3 123993683 123993711 -35606072 + AT_rich Low_complexity Low_complexity 1 28 0 7 1531 800 173 11 57 chr3 123994716 123994961 -35604822 + MTC LTR MaLR 1 212 -209 7 1531 219 36 0 0 chr3 123995460 123995488 -35604295 + (A)n Simple_repeat Simple_repeat 1 28 0 7 1531 851 177 7 0 chr3 123995490 123995631 -35604152 + MTC LTR MaLR 196 337 -84 7 1531 436 239 103 38 chr3 123995713 123995926 -35603857 + L1MB8 LINE L1 5763 5989 -189 7 1531 367 47 62 0 chr3 123996061 123996125 -35603658 + (CATA)n Simple_repeat Simple_repeat 2 69 0 7 1531 609 140 0 0 chr3 123996398 123996584 -35603199 + (TCTA)n Simple_repeat Simple_repeat 1 186 0 7 1531 1026 103 0 0 chr3 123996584 123996828 -35602955 + (TA)n Simple_repeat Simple_repeat 1 244 0 7 1531 7426 160 26 23 chr3 123996877 123999018 -35600765 - Lx2B LINE L1 -2 6998 4847 7 1531 4079 167 89 41 chr3 123999018 123999878 -35599905 - RMER19B LTR ERVK 0 902 1 7 1531 6240 157 24 23 chr3 123999878 123999991 -35599792 - Lx2B LINE L1 -1031 4846 4734 7 1531 225 94 0 0 chr3 124000000 124000032 -35599751 + (CATATA)n Simple_repeat Simple_repeat 5 36 0 1 1531 1855 133 17 0 chr3 124000032 124000325 -35599458 - L1_Mur1 LINE L1 -1153 4733 4436 2 1531 462 301 176 18 chr3 124001010 124001521 -35598262 - L1MA4 LINE L1 -229 6071 5464 3 1531 291 260 57 128 chr3 124001587 124001728 -35598055 + MLT1F LTR MaLR 30 160 -388 4 1531 3882 219 40 10 chr3 124001962 124002860 -35596923 + Lx5 LINE L1 6117 7041 -9 5 1531 490 345 23 28 chr3 124002872 124003055 -35596728 + B3 SINE B2 1 184 -32 6 1531 5685 116 54 11 chr3 124003055 124003970 -35595813 - RMER17B LTR ERVK -4 954 1 7 1531 490 345 23 28 chr3 124003970 124004001 -35595782 + B3 SINE B2 185 214 -2 6 1531 207 0 0 0 chr3 124004234 124004257 -35595526 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 8 1531 185 169 36 12 chr3 124004448 124004532 -35595251 + (TA)n Simple_repeat Simple_repeat 2 87 0 9 1531 389 211 0 14 chr3 124005026 124005098 -35594685 - 5S rRNA rRNA -31 90 20 1 1531 21 0 0 0 chr3 124005106 124005127 -35594656 + AT_rich Low_complexity Low_complexity 1 21 0 1 1531 2605 224 50 56 chr3 124005168 124005808 -35593975 - Lx5 LINE L1 -77 6973 6338 1 1531 585 0 0 0 chr3 124005870 124005935 -35593848 + (CTATT)n Simple_repeat Simple_repeat 3 67 0 1 1531 320 78 39 0 chr3 124005936 124005987 -35593796 + (TTTC)n Simple_repeat Simple_repeat 2 54 0 1 1531 514 129 24 0 chr3 124005988 124006073 -35593710 + RMER1C Other Other 1256 1342 0 1 1531 959 205 67 23 chr3 124006638 124006895 -35592888 - Lx4A LINE L1 -487 6510 6242 1 1531 495 148 45 36 chr3 124006895 124007007 -35592776 + Lx4A LINE L1 6943 7055 -3 1 1531 5149 111 54 18 chr3 124007535 124008390 -35591393 - Lx LINE L1 -1 6653 5768 1 1531 11316 151 18 5 chr3 124008391 124010311 -35589472 + Lx LINE L1 3810 5754 -129 1 1531 343 284 106 59 chr3 124010385 124010658 -35589125 - L1MC LINE L1 -2171 5614 5329 1 1531 206 245 0 0 chr3 124010861 124010914 -35588869 + T-rich Low_complexity Low_complexity 1 53 0 2 1531 667 296 34 10 chr3 124011091 124011296 -35588487 - B3 SINE B2 -6 210 1 2 1531 252 316 116 0 chr3 124011566 124011675 -35588108 + B1F2 SINE Alu 22 136 -14 2 1531 844 332 14 14 chr3 124013207 124013494 -35586289 - B4A SINE B4 -2 290 4 2 1531 186 128 0 0 chr3 124013924 124013963 -35585820 + (TAA)n Simple_repeat Simple_repeat 1 39 0 2 1531 791 231 42 31 chr3 124013963 124014155 -35585628 + B3 SINE B2 23 216 0 2 1531 610 335 94 40 chr3 124014487 124014838 -35584945 + MLT1D LTR MaLR 120 489 -16 2 1531 549 123 0 0 chr3 124015138 124015244 -35584539 + (TCTA)n Simple_repeat Simple_repeat 4 109 0 2 1531 372 94 0 0 chr3 124015244 124015297 -35584486 + (CA)n Simple_repeat Simple_repeat 2 54 0 2 1531 397 292 36 95 chr3 124015737 124016043 -35583740 + L1MB7 LINE L1 5875 6162 -22 2 1531 21 71 0 0 chr3 124016180 124016222 -35583561 + AT_rich Low_complexity Low_complexity 1 42 0 3 1531 21 0 0 0 chr3 124016370 124016391 -35583392 + AT_rich Low_complexity Low_complexity 1 21 0 3 1531 466 269 265 14 chr3 124016720 124017003 -35582780 - ORR1E LTR MaLR -4 355 2 3 1531 182 118 0 29 chr3 124017287 124017322 -35582461 + (TTTC)n Simple_repeat Simple_repeat 1 34 0 3 1531 228 254 37 15 chr3 124017337 124017473 -35582310 + (TA)n Simple_repeat Simple_repeat 1 139 0 3 1531 266 356 83 37 chr3 124017627 124017843 -35581940 - MLT1A1 LTR MaLR 0 408 183 3 1531 356 21 42 0 chr3 124018362 124018410 -35581373 + (CAGA)n Simple_repeat Simple_repeat 1 50 0 3 1531 285 294 88 0 chr3 124018517 124018585 -35581198 + RSINE1 SINE B4 92 165 0 3 1531 195 162 0 0 chr3 124019206 124019243 -35580540 + (CCTG)n Simple_repeat Simple_repeat 2 38 0 3 1531 403 151 21 0 chr3 124019278 124019371 -35580412 + (TATG)n Simple_repeat Simple_repeat 2 96 0 3 1531 340 296 77 49 chr3 124021396 124021627 -35578156 + MLT1G LTR MaLR 67 320 -275 4 1531 980 273 77 24 chr3 124022248 124022627 -35577156 - Lx6 LINE L1 -26 7434 7036 4 1531 540 0 0 0 chr3 124023627 124023687 -35576096 + (GA)n Simple_repeat Simple_repeat 1 60 0 4 1531 23 33 0 0 chr3 124025993 124026023 -35573760 + AT_rich Low_complexity Low_complexity 1 30 0 4 1531 25 0 0 0 chr3 124026062 124026087 -35573696 + AT_rich Low_complexity Low_complexity 1 25 0 4 1531 264 122 0 0 chr3 124026087 124026128 -35573655 + (TG)n Simple_repeat Simple_repeat 2 42 0 4 1531 243 0 0 0 chr3 124026615 124026642 -35573141 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 4 1531 190 264 68 14 chr3 124027296 124027369 -35572414 + L3 LINE CR1 2207 2283 -2206 4 1531 201 47 0 65 chr3 124027433 124027479 -35572304 + (CAAA)n Simple_repeat Simple_repeat 1 43 0 4 1531 381 22 0 0 chr3 124028223 124028269 -35571514 + (TG)n Simple_repeat Simple_repeat 2 47 0 4 1531 519 343 17 46 chr3 124028402 124028576 -35571207 - B4A SINE B4 -122 170 2 5 1531 221 191 48 0 chr3 124028725 124028788 -35570995 + GA-rich Low_complexity Low_complexity 2 67 0 5 1531 271 283 18 3 chr3 124030288 124030416 -35569367 - L1MC1 LINE L1 -161 6183 6050 5 1531 636 276 78 5 chr3 124031716 124031909 -35567874 + B3 SINE B2 1 207 -9 5 1531 790 260 20 15 chr3 124031927 124032130 -35567653 + B3 SINE B2 3 206 -10 5 1531 314 342 64 32 chr3 124032293 124032450 -35567333 + RSINE1 SINE B4 4 165 0 5 1531 366 42 0 0 chr3 124032645 124032693 -35567090 + (TG)n Simple_repeat Simple_repeat 2 49 0 5 1531 444 37 0 0 chr3 124033234 124033288 -35566495 + (TA)n Simple_repeat Simple_repeat 2 55 0 5 1531 1487 177 53 35 chr3 124033745 124034174 -35565609 + L1_Mur3 LINE L1 4194 4676 -1201 5 1531 768 304 131 82 chr3 124034206 124034740 -35565043 + RMER13A LTR ERVK 21 580 -280 5 1531 1992 165 23 0 chr3 124034881 124035227 -35564556 + L1_Mur3 LINE L1 4673 5026 -854 5 1531 2608 226 33 31 chr3 124035204 124035840 -35563943 + Lx7 LINE L1 6046 6682 -1014 6 1531 2284 239 38 112 chr3 124035820 124036293 -35563490 + Lx7 LINE L1 6909 7383 -313 6 1531 321 26 0 0 chr3 124036293 124036331 -35563452 + (CA)n Simple_repeat Simple_repeat 2 39 0 6 1531 2284 239 38 112 chr3 124036331 124036708 -35563075 + Lx7 LINE L1 7384 7696 0 6 1531 185 326 62 42 chr3 124037369 124037465 -35562318 - L2 LINE L2 -2060 1359 1262 6 1531 21 82 0 0 chr3 124037807 124037856 -35561927 + AT_rich Low_complexity Low_complexity 1 49 0 6 1531 533 295 141 44 chr3 124041284 124041624 -35558159 + Lx8 LINE L1 7095 7467 -6 6 1531 2527 166 31 12 chr3 124041668 124042185 -35557598 + RLTR11A2 LTR ERVK 1 527 0 6 1531 1220 82 35 0 chr3 124043104 124043275 -35556508 - B2_Mm2 SINE B2 -6 189 13 6 1531 506 250 16 16 chr3 124043295 124043417 -35556366 + Lx9 LINE L1 6499 6620 -1024 6 1531 359 280 0 0 chr3 124043419 124043512 -35556271 - Lx9 LINE L1 -912 6732 6640 6 1531 582 41 0 0 chr3 124043659 124043732 -35556051 + (GA)n Simple_repeat Simple_repeat 2 74 0 6 1531 1698 90 8 4 chr3 124044248 124044493 -35555290 + L1_Mus2 LINE L1 6320 6565 -1 7 1531 258 32 0 0 chr3 124044743 124044774 -35555009 + (CA)n Simple_repeat Simple_repeat 1 31 0 7 1531 836 254 62 31 chr3 124044819 124045111 -35554672 - Lx7 LINE L1 -335 7361 7061 7 1531 203 197 48 32 chr3 124045259 124045322 -35554461 + A-rich Low_complexity Low_complexity 1 64 0 7 1531 192 77 0 0 chr3 124046062 124046088 -35553695 + (TG)n Simple_repeat Simple_repeat 1 26 0 7 1531 183 100 0 0 chr3 124046210 124046240 -35553543 + (TG)n Simple_repeat Simple_repeat 2 31 0 7 1531 25 31 0 0 chr3 124046866 124046898 -35552885 + AT_rich Low_complexity Low_complexity 1 32 0 7 1531 230 336 148 7 chr3 124047070 124047205 -35552578 - RSINE1 SINE B4 0 165 12 7 1531 357 168 39 135 chr3 124047285 124047370 -35552413 + RMER17C LTR ERVK 91 179 -231 7 1531 980 69 28 17 chr3 124047370 124047548 -35552235 + (TTCTC)n Simple_repeat Simple_repeat 1 180 0 7 1531 357 168 39 135 chr3 124047548 124047669 -35552114 + RMER17C LTR ERVK 180 277 -133 7 1531 220 27 26 26 chr3 124047670 124047708 -35552075 + (GAAAA)n Simple_repeat Simple_repeat 2 39 0 8 1531 2092 241 144 33 chr3 124050518 124050612 -35549171 - RLTR40 LTR ERVK -53 764 643 8 1531 311 0 26 0 chr3 124050612 124050651 -35549132 + (TCTG)n Simple_repeat Simple_repeat 3 42 0 8 1531 2092 241 144 33 chr3 124050651 124051244 -35548539 - RLTR40 LTR ERVK -175 642 1 8 1531 971 302 68 65 chr3 124051606 124051946 -35547837 - ORR1D2 LTR MaLR -1 369 29 8 1531 191 114 29 0 chr3 124051954 124051989 -35547794 + (TAA)n Simple_repeat Simple_repeat 3 38 0 8 1531 258 32 0 0 chr3 124052494 124052525 -35547258 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 8 1531 949 174 32 5 chr3 124052996 124053188 -35546595 + B2_Mm2 SINE B2 2 216 0 8 1531 369 0 0 0 chr3 124053582 124053623 -35546160 + (TC)n Simple_repeat Simple_repeat 2 42 0 8 1531 21 0 0 0 chr3 124053866 124053887 -35545896 + AT_rich Low_complexity Low_complexity 1 21 0 8 1531 21 82 0 0 chr3 124053931 124053980 -35545803 + AT_rich Low_complexity Low_complexity 1 49 0 8 1531 736 164 8 8 chr3 124055257 124055386 -35544397 + RMER1C Other Other 111 239 -1103 9 1531 492 18 0 0 chr3 124055391 124055448 -35544335 + (CA)n Simple_repeat Simple_repeat 2 58 0 9 1531 419 70 28 0 chr3 124055449 124055520 -35544263 + (CAGAGA)n Simple_repeat Simple_repeat 2 74 0 9 1531 548 291 15 60 chr3 124055770 124055971 -35543812 + RMER1C Other Other 634 825 -517 9 1531 1459 123 23 83 chr3 124056099 124056364 -35543419 - RLTR22_Mur LTR ERVK -8 1840 1592 9 1531 4575 142 61 14 chr3 124056539 124057353 -35542430 - RLTR22_Mur LTR ERVK -995 853 1 9 1531 928 299 36 51 chr3 124057354 124057766 -35542017 - MTD LTR MaLR -13 406 1 9 1531 1936 256 34 46 chr3 124057773 124058599 -35541184 - L1_Mur3 LINE L1 -2693 3187 2372 9 1531 498 343 5 74 chr3 124059269 124059458 -35540325 - B3A SINE B2 -19 179 4 9 1531 528 16 0 0 chr3 124060923 124060984 -35538799 + (CA)n Simple_repeat Simple_repeat 2 62 0 9 1531 4251 73 0 9 chr3 124061149 124061715 -35538068 - L1Md_F2 LINE L1 -2 6580 6020 9 1531 8112 36 12 0 chr3 124061891 124063316 -35536467 - L1Md_T LINE L1 -1 6581 5146 1 1531 1111 71 0 0 chr3 124063400 124063540 -35536243 - B1_Mm SINE Alu -7 140 1 1 1531 1123 221 70 108 chr3 124063610 124064081 -35535702 + RLTR19-int LTR ERVK 3511 3963 -2174 1 1531 1751 69 4 0 chr3 124064145 124064376 -35535407 + L1Md_F2 LINE L1 6348 6579 -3 1 1531 1526 204 42 21 chr3 124064455 124064791 -35534992 + RLTR19-int LTR ERVK 4039 4381 -1756 1 1531 2016 188 31 8 chr3 124065423 124065815 -35533968 - Lx5 LINE L1 -632 6418 6018 1 1531 2966 230 21 10 chr3 124065806 124066426 -35533357 + Lx5 LINE L1 6424 7050 0 1 1531 259 330 0 41 chr3 124066489 124066587 -35533196 + RNERVK23-int LTR ERVK 7409 7502 -715 1 1531 2341 41 0 10 chr3 124066804 124067097 -35532686 + L1Md_F3 LINE L1 6281 6570 -14 1 1531 210 91 0 0 chr3 124067397 124067430 -35532353 + (TTTTG)n Simple_repeat Simple_repeat 5 37 0 1 1531 315 163 0 0 chr3 124067738 124067787 -35531996 - Lx9 LINE L1 -753 6891 6843 1 1531 27 0 0 0 chr3 124068113 124068140 -35531643 + AT_rich Low_complexity Low_complexity 1 27 0 1 1531 27 49 0 0 chr3 124068765 124068806 -35530977 + AT_rich Low_complexity Low_complexity 1 41 0 1 1531 22 0 0 0 chr3 124069518 124069540 -35530243 + AT_rich Low_complexity Low_complexity 1 22 0 1 1531 1378 190 41 4 chr3 124069646 124069915 -35529868 + RMER20A LTR ERVK 11 289 -227 1 1531 779 248 11 46 chr3 124069915 124070177 -35529606 - L1_Mur3 LINE L1 -6561 1151 899 1 1531 842 235 100 127 chr3 124070584 124070788 -35528995 - ORR1D1 LTR MaLR -45 329 124 1 1531 486 0 0 0 chr3 124070788 124070842 -35528941 + (TG)n Simple_repeat Simple_repeat 1 54 0 1 1531 656 12 12 0 chr3 124070842 124070922 -35528861 + (GA)n Simple_repeat Simple_repeat 1 82 0 1 1531 842 218 110 137 chr3 124070922 124071093 -35528690 - ORR1D1 LTR MaLR -209 165 5 1 1531 1134 278 24 17 chr3 124071098 124071511 -35528272 - L1_Rod LINE L1 -3122 2725 2310 1 1531 604 321 15 20 chr3 124072835 124073032 -35526751 - B3 SINE B2 0 216 21 1 1531 1081 93 0 0 chr3 124073938 124074078 -35525705 - B1_Mus1 SINE Alu -6 142 3 1 1531 816 285 31 22 chr3 124074919 124075185 -35524598 + RLTR17 LTR ERVK 249 619 -73 1 1531 21 36 0 0 chr3 124076768 124076796 -35522987 + AT_rich Low_complexity Low_complexity 1 28 0 1 1531 312 306 0 8 chr3 124076878 124077000 -35522783 + (CATA)n Simple_repeat Simple_repeat 2 122 0 1 1531 223 121 35 0 chr3 124077025 124077083 -35522700 + (CA)n Simple_repeat Simple_repeat 2 61 0 1 1531 21 0 0 0 chr3 124077448 124077469 -35522314 + AT_rich Low_complexity Low_complexity 1 21 0 1 1531 892 250 58 4 chr3 124077774 124078015 -35521768 - Lx6 LINE L1 -26 7434 7181 1 1531 592 281 51 20 chr3 124078091 124078287 -35521496 - B3 SINE B2 -13 203 2 1 1531 1394 238 63 14 chr3 124078793 124078992 -35520791 - ORR1C2 LTR MaLR 0 384 172 1 1531 729 0 0 0 chr3 124078992 124079073 -35520710 + (GA)n Simple_repeat Simple_repeat 2 82 0 1 1531 1394 238 63 14 chr3 124079073 124079236 -35520547 - ORR1C2 LTR MaLR -213 171 4 1 1531 554 335 34 83 chr3 124080105 124080261 -35519522 + B3A SINE B2 1 154 -44 1 1531 516 16 0 0 chr3 124080261 124080322 -35519461 + (CA)n Simple_repeat Simple_repeat 2 62 0 1 1531 278 335 34 83 chr3 124080322 124080370 -35519413 + B2_Mm2 SINE B2 147 195 0 1 1531 906 229 5 0 chr3 124080471 124080672 -35519111 - L1_Mur3 LINE L1 -6565 1147 946 1 1531 4386 169 26 11 chr3 124080667 124081625 -35518158 - L1VL4 LINE L1 -2525 1034 61 1 1531 1182 231 25 4 chr3 124081637 124081911 -35517872 - L1_Mur3 LINE L1 -7156 556 277 1 1531 216 0 0 0 chr3 124082481 124082505 -35517278 + (T)n Simple_repeat Simple_repeat 1 24 0 1 1531 563 248 133 25 chr3 124082576 124082770 -35517013 - ORR1D1 LTR MaLR -2 372 153 1 1531 747 247 66 6 chr3 124082790 124082973 -35516810 + ORR1D-int LTR MaLR 1 194 -1176 1 1531 386 248 30 15 chr3 124082977 124083108 -35516675 + L1_Rod LINE L1 1667 1799 -4048 1 1531 201 154 0 0 chr3 124083330 124083369 -35516414 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 1531 208 284 21 0 chr3 124085245 124085340 -35514443 + (TAGA)n Simple_repeat Simple_repeat 4 100 0 1 1531 1951 294 106 22 chr3 124085432 124086335 -35513448 + Lx8 LINE L1 6243 7221 -252 1 1531 533 256 129 42 chr3 124086560 124086939 -35512844 + L1MA4A LINE L1 5515 5926 -377 1 1531 390 21 0 0 chr3 124087504 124087551 -35512232 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 1531 232 339 6 30 chr3 124087792 124087959 -35511824 + (TG)n Simple_repeat Simple_repeat 1 163 0 1 1531 195 242 0 0 chr3 124088745 124088807 -35510976 + GA-rich Low_complexity Low_complexity 2 63 0 1 1531 243 0 0 0 chr3 124089592 124089619 -35510164 + (A)n Simple_repeat Simple_repeat 1 27 0 1 1531 186 43 0 0 chr3 124089652 124089675 -35510108 + (GAAAA)n Simple_repeat Simple_repeat 3 25 0 1 1531 9812 159 43 64 chr3 124089679 124090025 -35509758 + Lx2 LINE L1 3854 4215 -1662 1 1531 339 0 39 19 chr3 124090025 124090077 -35509706 + (CAAA)n Simple_repeat Simple_repeat 1 53 0 1 1531 9812 158 86 52 chr3 124090077 124092211 -35507572 + Lx2 LINE L1 4216 6396 -612 1 1531 262 268 72 12 chr3 124093151 124093234 -35506549 + B1F1 SINE Alu 1 88 -61 1 1531 580 231 0 28 chr3 124093578 124093871 -35505912 + (TG)n Simple_repeat Simple_repeat 1 284 0 1 1531 347 358 36 127 chr3 124094238 124094541 -35505242 + MTE-int LTR MaLR 42 336 -1244 1 1531 198 0 0 0 chr3 124094541 124094563 -35505220 + (CA)n Simple_repeat Simple_repeat 2 23 0 1 1531 347 358 36 127 chr3 124094563 124094618 -35505165 + MTE-int LTR MaLR 337 369 -1211 1 1531 383 313 60 16 chr3 124094618 124094800 -35504983 - B3A SINE B2 -6 192 3 1 1531 347 358 36 127 chr3 124094800 124094913 -35504870 + MTE-int LTR MaLR 370 471 -1109 1 1531 484 234 45 0 chr3 124095149 124095260 -35504523 + RMER1B Other Other 592 707 -359 1 1531 1650 285 208 18 chr3 124095403 124096287 -35503496 + RMER1C Other Other 30 1081 -261 1 1531 47 19 0 0 chr3 124096300 124096354 -35503429 + AT_rich Low_complexity Low_complexity 1 54 0 1 1531 303 128 168 69 chr3 124096354 124096455 -35503328 + RMER1C Other Other 1221 1331 -11 1 1531 326 344 21 47 chr3 124096495 124096687 -35503096 + MTE-int LTR MaLR 1338 1524 -56 1 1531 252 352 67 36 chr3 124096716 124096881 -35502902 + ORR1E LTR MaLR 41 210 -149 1 1531 849 107 0 0 chr3 124097327 124097449 -35502334 - B1_Mus1 SINE Alu 0 148 27 1 1531 285 128 0 0 chr3 124097585 124097632 -35502151 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 1531 246 32 0 0 chr3 124097727 124097758 -35502025 + (CA)n Simple_repeat Simple_repeat 2 32 0 1 1531 237 108 0 0 chr3 124097991 124098028 -35501755 + (ATG)n Simple_repeat Simple_repeat 1 37 0 1 1531 231 61 0 0 chr3 124098925 124098958 -35500825 + (T)n Simple_repeat Simple_repeat 1 33 0 1 1531 388 378 57 28 chr3 124099086 124099369 -35500414 + MTE2b LTR MaLR 69 359 -20 1 1531 295 315 15 30 chr3 124099691 124099822 -35499961 - MER44B DNA MER2_type -398 152 24 1 1531 636 303 87 58 chr3 124100066 124100444 -35499339 - Lx9 LINE L1 -845 6799 6411 1 1531 567 323 152 29 chr3 124100429 124101147 -35498636 + Lx9 LINE L1 6822 7627 -17 1 1531 8186 81 71 23 chr3 124101299 124102591 -35497192 + MusHAL1 LINE L1 624 1977 -735 1 1531 244 189 13 13 chr3 124102669 124102744 -35497039 + (TG)n Simple_repeat Simple_repeat 2 76 0 1 1531 555 365 59 14 chr3 124103204 124103493 -35496290 + MTE2b LTR MaLR 68 369 -10 1 1531 426 311 65 26 chr3 124103520 124103675 -35496108 + MTE2b-int LTR MaLR 15 175 -1405 1 1531 204 269 0 0 chr3 124104906 124104999 -35494784 + (TA)n Simple_repeat Simple_repeat 1 93 0 1 1531 210 37 0 0 chr3 124105675 124105702 -35494081 + (TG)n Simple_repeat Simple_repeat 2 28 0 1 1531 225 317 139 69 chr3 124105914 124106087 -35493696 + MTEa LTR MaLR 59 243 -136 1 1531 249 33 0 0 chr3 124106128 124106158 -35493625 + (T)n Simple_repeat Simple_repeat 1 30 0 1 1531 939 296 33 36 chr3 124106387 124106720 -35493063 + ORR1D2 LTR MaLR 39 370 0 1 1531 442 308 26 33 chr3 124106750 124106901 -35492882 + MTD LTR MaLR 37 186 -233 1 1531 1005 74 0 0 chr3 124106914 124107049 -35492734 + (TCTG)n Simple_repeat Simple_repeat 2 136 0 1 1531 355 264 0 0 chr3 124107049 124107155 -35492628 + (CATATA)n Simple_repeat Simple_repeat 2 107 0 1 1531 191 88 29 0 chr3 124107210 124107244 -35492539 + (GA)n Simple_repeat Simple_repeat 1 35 0 1 1531 560 310 60 15 chr3 124107244 124107444 -35492339 + MTD LTR MaLR 197 405 -14 1 1531 482 339 78 12 chr3 124108196 124108363 -35491420 + B3 SINE B2 14 191 -25 1 1531 462 83 0 0 chr3 124108466 124108538 -35491245 + (CA)n Simple_repeat Simple_repeat 2 73 0 1 1531 252 39 96 0 chr3 124108862 124108914 -35490869 + (CAAAAA)n Simple_repeat Simple_repeat 2 58 0 1 1531 522 61 0 35 chr3 124109568 124109653 -35490130 + L1Md_F2 LINE L1 6492 6573 -9 1 1531 532 305 55 70 chr3 124109701 124109902 -35489881 - B3 SINE B2 -16 200 3 1 1531 21 36 0 0 chr3 124109913 124109941 -35489842 + AT_rich Low_complexity Low_complexity 1 28 0 1 1531 380 320 0 5 chr3 124110220 124110343 -35489440 - B1F SINE Alu -29 120 2 1 1531 593 49 0 12 chr3 124111305 124111387 -35488396 + (TAGA)n Simple_repeat Simple_repeat 2 82 0 1 1531 666 132 0 28 chr3 124113573 124113682 -35486101 + U6 snRNA snRNA 2 107 0 1 1531 6635 118 25 12 chr3 124113682 124114832 -35484951 + Lx2 LINE L1 5479 6644 -353 1 1531 1060 135 88 5 chr3 124114822 124115015 -35484768 + Lx2 LINE L1 6765 6973 -24 1 1531 598 289 0 39 chr3 124115993 124116148 -35483635 + B1_Mur3 SINE Alu 1 149 0 1 1531 8340 101 39 21 chr3 124117967 124118146 -35481637 + Lx3_Mus LINE L1 5727 5906 -1103 1 1531 417 39 0 0 chr3 124118146 124118197 -35481586 + (GAAA)n Simple_repeat Simple_repeat 2 52 0 1 1531 8340 101 39 21 chr3 124118197 124119278 -35480505 + Lx3_Mus LINE L1 5907 7009 0 1 1531 6475 100 14 3 chr3 124119933 124120844 -35478939 + L1_Mus4 LINE L1 5632 6552 -84 1 1531 389 309 48 58 chr3 124120836 124121025 -35478758 + Lx9 LINE L1 7221 7407 -237 1 1531 604 258 49 25 chr3 124121128 124121331 -35478452 + Lx2B LINE L1 6788 6995 -5 1 1531 240 224 23 23 chr3 124123602 124123689 -35476094 + Lx9 LINE L1 7536 7622 -22 1 1532 665 293 40 5 chr3 124126263 124126462 -35473321 - B3 SINE B2 -6 210 5 1 1532 234 0 0 0 chr3 124126555 124126581 -35473202 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1 1532 217 328 80 48 chr3 124126847 124126972 -35472811 - L2 LINE L2 -1320 2099 1971 1 1532 190 176 132 38 chr3 124128433 124128486 -35471297 - L3 LINE CR1 -900 3589 3532 1 1532 244 241 0 0 chr3 124129128 124129186 -35470597 + (TA)n Simple_repeat Simple_repeat 1 58 0 1 1532 407 324 7 34 chr3 124129808 124129955 -35469828 + RSINE1 SINE B4 4 146 -19 1 1532 786 180 104 0 chr3 124130135 124130318 -35469465 - Lx2B LINE L1 -18 6982 6781 2 1532 721 304 71 13 chr3 124130344 124130737 -35469046 + Lx9 LINE L1 7205 7620 -24 2 1532 270 0 0 0 chr3 124131817 124131847 -35467936 + (TTTG)n Simple_repeat Simple_repeat 4 33 0 2 1532 477 0 0 0 chr3 124134249 124134302 -35465481 + (CA)n Simple_repeat Simple_repeat 1 53 0 2 1532 291 254 95 40 chr3 124135376 124135524 -35464259 + MTD-int LTR MaLR 1096 1251 -7 2 1532 538 214 0 28 chr3 124135534 124135640 -35464143 + MTD LTR MaLR 18 120 -299 2 1532 252 345 87 47 chr3 124135622 124135771 -35464012 - MTB_Mm LTR MaLR -172 235 81 2 1532 242 279 178 36 chr3 124135784 124136227 -35463556 + Arthur1 DNA Tip100 3408 3913 -34 2 1532 2044 148 0 3 chr3 124136429 124136741 -35463042 + RLTR10E LTR ERVK 1 311 0 2 1532 1391 268 35 37 chr3 124137044 124137508 -35462275 - L1_Mur3 LINE L1 -34 5846 5384 2 1532 233 215 15 15 chr3 124137639 124137705 -35462078 - L1M5 LINE L1 -2178 3968 3903 2 1532 274 345 0 0 chr3 124138635 124138722 -35461061 - PB1D7 SINE Alu -5 115 29 2 1532 334 306 9 0 chr3 124138757 124138865 -35460918 - PB1D10 SINE Alu -8 109 1 2 1532 555 277 40 7 chr3 124138927 124139076 -35460707 + RSINE1 SINE B4 12 165 0 2 1532 483 18 0 0 chr3 124139087 124139143 -35460640 + (GA)n Simple_repeat Simple_repeat 2 57 0 2 1532 1079 91 7 0 chr3 124139312 124139455 -35460328 - B1_Mus1 SINE Alu 0 148 5 2 1532 356 335 122 45 chr3 124140522 124140815 -35458968 + MTEa LTR MaLR 68 379 0 2 1532 400 292 132 25 chr3 124140916 124141113 -35458670 - Tigger7 DNA MER2_type -2090 401 184 2 1532 961 274 54 16 chr3 124141114 124141516 -35458267 - Lx6 LINE L1 -290 7170 6699 2 1532 826 200 10 53 chr3 124141528 124141639 -35458144 + Lx5 LINE L1 5819 5927 -1123 2 1532 1531 216 191 90 chr3 124141639 124142194 -35457589 - RMER19C LTR ERVK 0 611 1 2 1532 826 200 10 53 chr3 124142194 124142288 -35457495 + Lx5 LINE L1 5928 6015 -1035 2 1532 438 305 28 7 chr3 124142302 124142444 -35457339 - Lx8 LINE L1 -1037 6436 6292 2 1532 39 68 0 0 chr3 124142445 124142519 -35457264 + AT_rich Low_complexity Low_complexity 1 74 0 2 1532 367 58 0 19 chr3 124142937 124142990 -35456793 + RLTR21 LTR ERVK 987 1038 -534 2 1532 3732 142 10 75 chr3 124142991 124143685 -35456098 + Lx2 LINE L1 6320 6977 -20 2 1532 976 101 0 0 chr3 124143685 124143823 -35455960 + B1_Mm SINE Alu 1 138 -9 2 1532 3732 142 10 75 chr3 124143823 124143851 -35455932 + Lx2 LINE L1 6978 6995 -2 2 1532 432 0 0 0 chr3 124143905 124143953 -35455830 + (TG)n Simple_repeat Simple_repeat 2 49 0 2 1532 21 0 0 0 chr3 124144185 124144206 -35455577 + AT_rich Low_complexity Low_complexity 1 21 0 2 1532 392 250 27 55 chr3 124144702 124144812 -35454971 + PB1D7 SINE Alu 14 120 0 2 1532 241 279 77 58 chr3 124145434 124145590 -35454193 - RMER12 LTR ERVK -478 844 686 2 1532 21 57 0 0 chr3 124145670 124145705 -35454078 + AT_rich Low_complexity Low_complexity 1 35 0 2 1532 819 277 21 98 chr3 124146982 124147361 -35452422 - Lx7 LINE L1 0 7696 7354 2 1532 204 40 0 0 chr3 124147361 124147386 -35452397 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 2 1532 819 277 21 98 chr3 124147386 124147483 -35452300 - Lx7 LINE L1 -343 7353 7257 2 1532 1311 207 51 45 chr3 124147489 124147843 -35451940 + L1_Mur3 LINE L1 3349 3704 -2176 2 1532 23 33 0 0 chr3 124147856 124147886 -35451897 + AT_rich Low_complexity Low_complexity 1 30 0 2 1532 2481 130 25 2 chr3 124147887 124148280 -35451503 - Lx2B LINE L1 -24 6976 6575 2 1532 579 100 11 0 chr3 124148280 124148370 -35451413 + RLTR9A LTR ERVK 1 91 -277 2 1532 1600 76 0 0 chr3 124148370 124148580 -35451203 - Lx2 LINE L1 -150 6847 6638 2 1532 5823 200 88 45 chr3 124148580 124150096 -35449687 - RLTR22_Mur LTR ERVK -267 1581 1 2 1532 839 290 68 34 chr3 124151929 124152390 -35447393 + Lx6 LINE L1 6455 7250 -210 2 1532 1264 99 0 40 chr3 124152696 124152895 -35446888 - B2_Mm2 SINE B2 -4 191 1 2 1532 183 80 0 0 chr3 124153070 124153095 -35446688 + (TG)n Simple_repeat Simple_repeat 2 26 0 2 1532 389 344 94 17 chr3 124153095 124153382 -35446401 - MTE-int LTR MaLR -1243 337 29 2 1532 36 40 0 0 chr3 124153831 124153881 -35445902 + AT_rich Low_complexity Low_complexity 1 50 0 2 1532 234 270 5 0 chr3 124154654 124154712 -35445071 - B1F1 SINE Alu -45 72 13 2 1532 1005 115 0 26 chr3 124156558 124156710 -35443073 + B1_Mus1 SINE Alu 1 148 0 2 1532 216 0 0 0 chr3 124156710 124156734 -35443049 + (A)n Simple_repeat Simple_repeat 1 24 0 2 1532 543 85 0 0 chr3 124156807 124156889 -35442894 + (CA)n Simple_repeat Simple_repeat 2 83 0 2 1532 27 0 0 0 chr3 124157694 124157721 -35442062 + AT_rich Low_complexity Low_complexity 1 27 0 2 1532 1660 355 32 59 chr3 124157798 124158283 -35441500 - Lx8 LINE L1 -113 7360 6912 2 1532 3674 84 27 2 chr3 124158283 124158797 -35440986 - L1_Mus1 LINE L1 -1 6566 6040 2 1532 1660 355 32 59 chr3 124158797 124159403 -35440380 - Lx8 LINE L1 -562 6911 6298 2 1532 447 61 24 35 chr3 124159523 124159608 -35440175 + (TCTA)n Simple_repeat Simple_repeat 4 87 0 2 1532 234 346 0 0 chr3 124159669 124159773 -35440010 + (TA)n Simple_repeat Simple_repeat 1 104 0 2 1532 717 291 15 40 chr3 124160304 124160576 -35439207 - Lx8 LINE L1 -1518 5955 5691 2 1532 557 94 0 10 chr3 124160709 124160806 -35438977 + L1Md_F3 LINE L1 6489 6584 0 2 1532 28 0 0 0 chr3 124160830 124160858 -35438925 + AT_rich Low_complexity Low_complexity 1 28 0 2 1532 648 36 0 0 chr3 124160858 124160941 -35438842 + (CA)n Simple_repeat Simple_repeat 2 84 0 2 1532 538 311 55 0 chr3 124160952 124161135 -35438648 + Lx9 LINE L1 6349 6541 -1103 2 1532 418 235 25 0 chr3 124161315 124161396 -35438387 - B3 SINE B2 -133 83 1 2 1532 756 0 0 0 chr3 124162010 124162094 -35437689 + (TTTC)n Simple_repeat Simple_repeat 1 84 0 2 1532 247 250 12 12 chr3 124162104 124162185 -35437598 - L1_Rod LINE L1 -3918 1929 1849 2 1532 2446 172 44 94 chr3 124162188 124162336 -35437447 - Lx5 LINE L1 -672 6378 6267 2 1532 913 64 40 79 chr3 124162336 124162488 -35437295 + L1_Mus1 LINE L1 6422 6567 0 2 1532 2446 172 44 94 chr3 124162488 124162911 -35436872 - Lx5 LINE L1 -784 6266 5836 2 1532 209 169 25 38 chr3 124162916 124162996 -35436787 + (CAAA)n Simple_repeat Simple_repeat 3 81 0 2 1532 780 164 191 0 chr3 124163573 124163756 -35436027 - Lx LINE L1 -5 6649 6432 2 1532 302 216 42 74 chr3 124163864 124163959 -35435824 + 4.5SRNA scRNA scRNA 1 92 -2 2 1532 1441 230 21 40 chr3 124163959 124164662 -35435121 + L1_Mur3 LINE L1 260 1029 -6683 2 1532 439 225 23 188 chr3 124164852 124165023 -35434760 - B3A SINE B2 0 195 53 2 1532 3161 165 36 28 chr3 124167065 124167780 -35432003 - Lx2 LINE L1 -346 6651 6023 2 1532 266 195 13 0 chr3 124167805 124167882 -35431901 - Lx9 LINE L1 -1 7643 7566 2 1532 450 0 0 0 chr3 124167907 124167957 -35431826 + (CATA)n Simple_repeat Simple_repeat 2 51 0 2 1532 808 262 20 10 chr3 124167961 124168165 -35431618 + Lx9 LINE L1 7210 7415 -229 2 1532 743 330 130 19 chr3 124168182 124168719 -35431064 + Lx8 LINE L1 6816 7412 -61 2 1532 319 235 31 0 chr3 124169005 124169103 -35430680 + (TA)n Simple_repeat Simple_repeat 2 102 0 2 1532 546 257 52 19 chr3 124169126 124169281 -35430502 - B3 SINE B2 0 216 57 2 1532 402 353 25 50 chr3 124169948 124170148 -35429635 + B3A SINE B2 4 198 0 2 1532 403 309 134 32 chr3 124170248 124170562 -35429221 + L1M2 LINE L1 4236 4581 -1562 2 1532 440 341 99 0 chr3 124170628 124170810 -35428973 - B3 SINE B2 -12 204 5 2 1532 27 49 0 0 chr3 124171353 124171394 -35428389 + AT_rich Low_complexity Low_complexity 1 41 0 2 1532 31 44 0 0 chr3 124173132 124173177 -35426606 + AT_rich Low_complexity Low_complexity 1 45 0 2 1532 592 268 41 26 chr3 124174627 124174822 -35424961 + B3 SINE B2 2 199 -17 2 1532 369 0 0 0 chr3 124174825 124174866 -35424917 + (TAAA)n Simple_repeat Simple_repeat 1 41 0 2 1532 269 344 66 45 chr3 124175308 124175506 -35424277 - MLT1E2-int LTR MaLR -638 851 650 2 1532 284 304 85 31 chr3 124175653 124175782 -35424001 - MLT1E2 LTR MaLR -308 319 184 2 1532 1223 257 17 14 chr3 124176191 124176613 -35423170 + L1_Rod LINE L1 2315 2737 -3110 2 1532 623 264 90 42 chr3 124176679 124177129 -35422654 + L1_Rod LINE L1 3292 3755 -2385 2 1532 660 251 71 14 chr3 124177141 124177351 -35422432 - RLTR45 LTR ERVK 0 482 261 2 1532 1726 238 22 66 chr3 124177622 124178076 -35421707 - ETnERV2-int LTR ERVK -326 7080 6647 2 1532 792 255 100 69 chr3 124178089 124178409 -35421374 - ETnERV2-int LTR ERVK -584 6660 6331 2 1532 383 217 71 21 chr3 124178529 124178670 -35421113 + L1_Rod LINE L1 3750 3897 -1950 2 1532 1345 298 59 30 chr3 124178695 124179335 -35420448 - L1_Mur3 LINE L1 -3016 2864 2206 2 1532 728 264 90 24 chr3 124179366 124179788 -35419995 + MERVL_2A-int LTR ERVL 1703 2266 -3495 2 1532 4738 89 15 24 chr3 124179802 124180523 -35419260 - L1_Mur1 LINE L1 -928 4958 4244 2 1532 1715 116 38 0 chr3 124180524 124180791 -35418992 + Lx3_Mus LINE L1 6730 7006 -3 2 1532 401 279 142 0 chr3 124180800 124180990 -35418793 + MERVL_2A-int LTR ERVL 2399 2615 -3146 2 1532 364 353 5 124 chr3 124181059 124181178 -35418605 - 7SLRNA srpRNA srpRNA -129 185 91 2 1532 7230 34 0 1 chr3 124181178 124182038 -35417745 + L1Md_T LINE L1 5724 6582 0 2 1532 364 353 5 124 chr3 124182038 124182128 -35417655 - 7SLRNA srpRNA srpRNA -224 90 1 2 1532 1290 266 30 46 chr3 124182503 124182847 -35416936 - ORR1D2 LTR MaLR -6 364 23 2 1532 1750 190 40 32 chr3 124182847 124183222 -35416561 - ORR1C1 LTR MaLR 0 378 1 2 1532 1290 266 30 46 chr3 124183222 124183247 -35416536 - ORR1D2 LTR MaLR -348 22 1 2 1532 33071 74 30 12 chr3 124184344 124190375 -35409408 - L1Md_F3 LINE L1 -1 6583 441 2 1532 22 0 0 0 chr3 124190401 124190423 -35409360 + AT_rich Low_complexity Low_complexity 1 22 0 2 1532 1434 68 62 5 chr3 124190599 124190792 -35408991 - L1_Mus3 LINE L1 -268 6370 6167 2 1532 1649 117 23 63 chr3 124190792 124191093 -35408690 + L1_Mus3 LINE L1 6346 6634 -4 2 1532 2777 232 134 131 chr3 124192335 124192717 -35407066 + Lx7 LINE L1 6473 6901 -795 2 1532 230 314 14 54 chr3 124192717 124192791 -35406992 - LTR81C LTR ERV1? -827 326 256 2 1532 2777 232 134 131 chr3 124192791 124193232 -35406551 + Lx7 LINE L1 6902 7398 -298 2 1532 6934 61 9 53 chr3 124193232 124194167 -35405616 + RLTR13B1 LTR ERVK 1 893 0 2 1532 2777 231 88 89 chr3 124194167 124194501 -35405282 + Lx7 LINE L1 7314 7692 -4 2 1532 24 32 0 0 chr3 124194815 124194846 -35404937 + AT_rich Low_complexity Low_complexity 1 31 0 2 1532 220 283 21 42 chr3 124196310 124196406 -35403377 + (TATG)n Simple_repeat Simple_repeat 3 96 0 2 1532 261 0 0 0 chr3 124196517 124196546 -35403237 + (T)n Simple_repeat Simple_repeat 1 29 0 3 1532 1108 90 0 0 chr3 124196546 124196691 -35403092 - B1_Mus2 SINE Alu 0 147 3 3 1532 2654 72 3 0 chr3 124196731 124197079 -35402704 + L1_Mus2 LINE L1 6218 6566 0 3 1532 403 263 16 56 chr3 124197648 124197773 -35402010 - PB1D7 SINE Alu 0 120 1 3 1532 3734 160 78 10 chr3 124197987 124198695 -35401088 + RMER6A LTR ERVK 1 756 0 3 1532 629 242 9 79 chr3 124199079 124199097 -35400686 - B3 SINE B2 -11 205 188 3 1532 183 80 0 0 chr3 124199097 124199122 -35400661 + (TGGA)n Simple_repeat Simple_repeat 1 25 0 3 1532 629 242 9 79 chr3 124199122 124199318 -35400465 - B3 SINE B2 -29 187 6 3 1532 502 313 117 14 chr3 124199482 124199696 -35400087 + Lx8 LINE L1 6287 6522 -951 3 1532 551 341 100 47 chr3 124200235 124200805 -35398978 - L1MDa LINE L1 -4345 2288 1689 3 1532 240 111 0 0 chr3 124200902 124200938 -35398845 + (TTTA)n Simple_repeat Simple_repeat 1 36 0 3 1532 3482 137 85 35 chr3 124200938 124201588 -35398195 - Lx4A LINE L1 -1 7057 6376 3 1532 4617 116 26 4 chr3 124201588 124202675 -35397108 + Lx4A LINE L1 5178 6297 -761 3 1532 445 295 16 8 chr3 124202969 124203092 -35396691 + RSINE1 SINE B4 12 135 -30 3 1532 470 252 25 64 chr3 124203570 124203727 -35396056 - ID_B1 SINE B4 -69 155 5 3 1532 1865 196 93 3 chr3 124204705 124205093 -35394690 + RMER1B Other Other 643 1065 -1 3 1532 25 31 0 0 chr3 124205129 124205161 -35394622 + AT_rich Low_complexity Low_complexity 1 32 0 3 1532 432 37 0 0 chr3 124206300 124206354 -35393429 + (TA)n Simple_repeat Simple_repeat 1 54 0 3 1532 5467 57 0 6 chr3 124206372 124207064 -35392719 + L1Md_F2 LINE L1 5882 6569 -13 3 1532 31792 84 3 6 chr3 124207070 124211514 -35388269 + L1Md_F2 LINE L1 304 4733 -1150 3 1532 249 57 0 0 chr3 124211514 124211549 -35388234 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 3 1532 31792 80 2 2 chr3 124211549 124212400 -35387383 + L1Md_F2 LINE L1 4734 5584 -299 3 1532 8018 54 0 4 chr3 124212400 124213398 -35386385 + L1Md_F2 LINE L1 5587 6580 -2 3 1532 1093 292 18 0 chr3 124214276 124214560 -35385223 - RMER1B Other Other -768 298 10 3 1532 332 282 282 33 chr3 124214854 124215251 -35384532 - L1M2 LINE L1 -1671 4472 3977 3 1532 343 262 24 0 chr3 124215318 124215402 -35384381 + ID_B1 SINE B4 58 143 -81 3 1532 25 51 0 0 chr3 124215490 124215529 -35384254 + AT_rich Low_complexity Low_complexity 1 39 0 3 1532 247 286 0 38 chr3 124215936 124216016 -35383767 + CT-rich Low_complexity Low_complexity 3 79 0 3 1532 362 313 112 60 chr3 124216317 124216425 -35383358 + Lx9 LINE L1 5979 6075 -1569 3 1532 2356 112 3 0 chr3 124216425 124216747 -35383036 - ORR1A2 LTR MaLR -4 323 1 3 1532 362 313 112 60 chr3 124216747 124217022 -35382761 + Lx9 LINE L1 6076 6382 -1262 3 1532 1174 50 0 12 chr3 124217152 124217313 -35382470 + L1_Mus2 LINE L1 6408 6566 0 3 1532 3791 122 53 5 chr3 124217633 124218275 -35381508 - L1_Mus4 LINE L1 0 6636 5964 3 1532 6590 113 32 47 chr3 124218305 124219607 -35380176 - Lx LINE L1 -3 6651 5360 3 1532 2229 49 0 14 chr3 124219608 124219896 -35379887 - L1Md_T LINE L1 0 6582 6299 3 1532 233 310 28 0 chr3 124220190 124220261 -35379522 + LTR81B LTR ERV1? 259 331 -1062 3 1532 22 0 0 0 chr3 124222273 124222295 -35377488 + AT_rich Low_complexity Low_complexity 1 22 0 3 1532 22 0 0 0 chr3 124222484 124222506 -35377277 + AT_rich Low_complexity Low_complexity 1 22 0 3 1532 513 165 0 0 chr3 124222625 124222722 -35377061 + (TA)n Simple_repeat Simple_repeat 2 98 0 3 1532 22 0 0 0 chr3 124224209 124224231 -35375552 + AT_rich Low_complexity Low_complexity 1 22 0 3 1532 180 111 0 0 chr3 124224301 124224328 -35375455 + (CATATA)n Simple_repeat Simple_repeat 3 29 0 3 1532 253 393 18 0 chr3 124224443 124224542 -35375241 + B3A SINE B2 85 188 -28 3 1532 345 256 0 99 chr3 124224582 124224734 -35375049 - L1_Mur3 LINE L1 -373 5507 5371 3 1532 720 225 40 29 chr3 124224765 124224939 -35374844 + B2_Mm2 SINE B2 1 176 -19 3 1532 841 331 62 28 chr3 124224953 124225634 -35374149 - L1M2 LINE L1 -769 5374 4671 3 1532 229 386 18 0 chr3 124225657 124225820 -35373963 + L1_Mur3 LINE L1 2608 2773 -3107 3 1532 1016 292 51 47 chr3 124225894 124225998 -35373785 + L1M2 LINE L1 2931 3036 -3107 3 1532 312 27 0 0 chr3 124225998 124226035 -35373748 + (CAAAA)n Simple_repeat Simple_repeat 2 38 0 3 1532 1016 292 51 47 chr3 124226035 124226754 -35373029 + L1M2 LINE L1 3037 3757 -2386 3 1532 719 164 31 62 chr3 124227567 124227729 -35372054 - RMER6C LTR ERVK -522 168 12 3 1532 1445 72 0 0 chr3 124227840 124228035 -35371748 - L1Md_F3 LINE L1 -12 6572 6378 3 1532 301 297 177 0 chr3 124228240 124228415 -35371368 + B3 SINE B2 5 210 -6 3 1532 200 192 0 37 chr3 124228419 124228435 -35371348 + A-rich Low_complexity Low_complexity 1 16 0 3 1532 417 88 626 0 chr3 124228435 124228526 -35371257 + B1_Mus1 SINE Alu 1 148 0 3 1532 200 192 0 37 chr3 124228526 124228563 -35371220 + A-rich Low_complexity Low_complexity 17 52 0 3 1532 32 43 0 0 chr3 124228736 124228782 -35371001 + AT_rich Low_complexity Low_complexity 1 46 0 3 1532 329 296 123 23 chr3 124228784 124229092 -35370691 + L1M2 LINE L1 4911 5249 -891 3 1532 405 269 105 46 chr3 124229129 124229281 -35370502 - L1_Mur3 LINE L1 -229 5651 5491 3 1532 21 82 0 0 chr3 124229513 124229562 -35370221 + AT_rich Low_complexity Low_complexity 1 49 0 3 1532 4836 96 12 0 chr3 124229624 124230303 -35369480 - L1_Mus4 LINE L1 -357 6279 5593 3 1532 862 171 26 47 chr3 124230326 124230516 -35369267 - RLTR33 LTR ERVK -492 186 1 3 1532 4101 157 23 11 chr3 124230638 124231347 -35368436 + Lx2A1 LINE L1 6286 7002 -6 3 1532 1127 237 89 7 chr3 124231687 124231980 -35367803 - Lx5 LINE L1 0 7050 6734 3 1532 3206 208 89 6 chr3 124231975 124232681 -35367102 + Lx5 LINE L1 5981 6745 -305 3 1532 690 13 0 0 chr3 124233758 124233837 -35365946 + (TC)n Simple_repeat Simple_repeat 1 79 0 3 1532 346 366 81 0 chr3 124235495 124235618 -35364165 - RSINE1 SINE B4 -27 138 6 3 1532 226 26 25 50 chr3 124236514 124236554 -35363229 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 3 1532 688 218 7 0 chr3 124237419 124237566 -35362217 + Lx7 LINE L1 6663 6810 -886 3 1532 1537 239 25 54 chr3 124237569 124237895 -35361888 + Lx7 LINE L1 6931 7247 -449 3 1532 243 79 0 0 chr3 124237895 124237933 -35361850 + (GTTTG)n Simple_repeat Simple_repeat 2 39 0 3 1532 1131 69 0 0 chr3 124237933 124238077 -35361706 - B1_Mus2 SINE Alu -2 145 2 3 1532 1537 239 25 54 chr3 124238077 124238192 -35361591 + Lx7 LINE L1 7248 7359 -337 3 1532 262 224 33 71 chr3 124238206 124238389 -35361394 + RMER17A LTR ERVK 292 467 -284 3 1532 296 86 57 0 chr3 124238423 124238493 -35361290 + (TTTG)n Simple_repeat Simple_repeat 2 75 0 3 1532 235 128 0 21 chr3 124238499 124238547 -35361236 + Lx7 LINE L1 7647 7693 -3 3 1532 271 196 36 0 chr3 124238904 124238960 -35360823 - Lx7 LINE L1 -600 7096 7039 3 1532 441 296 68 104 chr3 124239428 124239843 -35359940 + RLTR11A2 LTR ERVK 103 502 -25 3 1532 37 0 0 0 chr3 124240233 124240270 -35359513 + AT_rich Low_complexity Low_complexity 1 37 0 3 1532 366 23 0 0 chr3 124240272 124240315 -35359468 + (CATA)n Simple_repeat Simple_repeat 2 44 0 3 1532 21 57 0 0 chr3 124240625 124240660 -35359123 + AT_rich Low_complexity Low_complexity 1 35 0 3 1532 611 372 49 30 chr3 124240721 124240984 -35358799 + B4A SINE B4 3 270 -22 3 1532 21 36 0 0 chr3 124241806 124241834 -35357949 + AT_rich Low_complexity Low_complexity 1 28 0 3 1532 25 31 0 0 chr3 124241964 124241996 -35357787 + AT_rich Low_complexity Low_complexity 1 32 0 3 1532 1033 119 0 0 chr3 124242019 124242162 -35357621 - B1_Mus1 SINE Alu -5 143 1 3 1532 380 248 33 8 chr3 124242186 124242308 -35357475 - Lx7 LINE L1 -13 7683 7559 3 1532 25 0 0 0 chr3 124242334 124242359 -35357424 + AT_rich Low_complexity Low_complexity 1 25 0 3 1532 283 337 97 11 chr3 124242473 124242566 -35357217 + B4A SINE B4 13 113 -179 3 1532 228 111 0 0 chr3 124242686 124242722 -35357061 + (CATA)n Simple_repeat Simple_repeat 3 38 0 3 1532 1001 140 0 19 chr3 124242897 124243057 -35356726 - B2_Mm2 SINE B2 -34 161 5 3 1532 283 227 23 30 chr3 124243139 124243271 -35356512 - Lx6 LINE L1 0 7460 7330 3 1532 1254 219 9 101 chr3 124243272 124243617 -35356166 - RMER19C LTR ERVK 0 611 299 3 1532 9154 108 7 15 chr3 124244416 124245909 -35353874 + Lx3A LINE L1 5501 6978 -3 3 1532 23 0 0 0 chr3 124245909 124245932 -35353851 + AT_rich Low_complexity Low_complexity 1 23 0 3 1532 453 291 72 7 chr3 124246170 124246322 -35353461 + MTD LTR MaLR 258 419 0 3 1532 1098 282 74 64 chr3 124246322 124246822 -35352961 + MTD-int LTR MaLR 1 505 -753 3 1532 228 206 145 14 chr3 124246822 124246891 -35352892 + MTE2a LTR MaLR 243 320 -59 3 1532 414 314 109 19 chr3 124246897 124247053 -35352730 - Lx8 LINE L1 -1059 6414 6245 3 1532 321 135 0 0 chr3 124248298 124248350 -35351433 + (CA)n Simple_repeat Simple_repeat 2 53 0 3 1532 445 308 27 20 chr3 124248805 124248951 -35350832 + B1F SINE Alu 1 147 -2 3 1532 1799 120 40 13 chr3 124249160 124249463 -35350320 + Lx LINE L1 6344 6654 0 3 1532 393 349 16 5 chr3 124249622 124249812 -35349971 + Lx8 LINE L1 7049 7240 -233 3 1532 231 103 0 0 chr3 124249818 124249857 -35349926 + (T)n Simple_repeat Simple_repeat 1 39 0 3 1532 438 292 42 30 chr3 124250105 124250271 -35349512 + Lx9 LINE L1 6707 6874 -770 3 1532 640 329 144 29 chr3 124250674 124250987 -35348796 + ORR1D2 LTR MaLR 22 370 0 3 1532 321 340 53 94 chr3 124250992 124251407 -35348376 + L1MC2 LINE L1 5922 6319 -25 3 1532 332 337 18 82 chr3 124251411 124251631 -35348152 + B3 SINE B2 5 210 -6 3 1532 22 56 0 0 chr3 124252173 124252209 -35347574 + AT_rich Low_complexity Low_complexity 1 36 0 3 1532 23 0 0 0 chr3 124252407 124252430 -35347353 + AT_rich Low_complexity Low_complexity 1 23 0 3 1532 865 245 79 7 chr3 124253657 124253937 -35345846 + Lx9 LINE L1 7344 7643 -1 3 1532 1100 109 0 0 chr3 124253969 124254116 -35345667 - B1_Mm SINE Alu 0 147 1 3 1532 283 391 26 9 chr3 124254145 124254261 -35345522 - RSINE1 SINE B4 -4 161 44 3 1532 252 137 0 0 chr3 124254413 124254464 -35345319 + (CA)n Simple_repeat Simple_repeat 2 52 0 3 1532 242 170 61 18 chr3 124254459 124254573 -35345210 + (CAGAGA)n Simple_repeat Simple_repeat 6 124 0 4 1532 370 272 21 96 chr3 124254628 124254815 -35344968 - MTE2a LTR MaLR -201 178 6 4 1532 212 209 0 23 chr3 124254818 124254862 -35344921 - B4A SINE B4 -249 43 1 4 1532 384 269 55 18 chr3 124254978 124255215 -35344568 - L1MA6 LINE L1 -48 6243 6003 4 1532 949 328 19 66 chr3 124255205 124255675 -35344108 + Lx8 LINE L1 6229 6676 -797 4 191 958 318 91 12 chr3 124255769 124256266 -35343517 + Lx9 LINE L1 6797 7332 -312 4 1533 3542 31 5 0 chr3 124256270 124256691 -35343092 + L1Md_F3 LINE L1 5851 6273 -311 4 1533 1593 180 63 90 chr3 124256852 124257218 -35342565 + ORR1B1 LTR MaLR 39 394 0 4 1533 1460 186 51 126 chr3 124260023 124260108 -35339675 - ORR1A2 LTR MaLR 0 346 295 4 1533 1059 108 0 0 chr3 124260108 124260256 -35339527 - B1_Mus1 SINE Alu 0 148 1 4 1533 1650 174 14 24 chr3 124260256 124260544 -35339239 - ORR1A2 LTR MaLR -42 285 1 4 1533 199 227 104 15 chr3 124260734 124260801 -35338982 + L4 LINE RTE 1705 1777 -252 4 1533 6848 204 56 11 chr3 124261693 124263115 -35336668 + Lx5 LINE L1 5587 7046 -4 4 1533 23 68 0 0 chr3 124263353 124263397 -35336386 + AT_rich Low_complexity Low_complexity 1 44 0 4 1533 522 185 9 53 chr3 124263711 124263825 -35335958 - RMER1A Other Other -11 1019 911 4 1533 519 45 0 0 chr3 124263990 124264056 -35335727 + (TG)n Simple_repeat Simple_repeat 2 67 0 4 1533 1542 275 61 36 chr3 124264172 124264879 -35334904 + Lx9 LINE L1 5310 6115 -1529 4 1533 3080 64 15 5 chr3 124264895 124265306 -35334477 + L1Md_F2 LINE L1 6168 6582 0 4 1533 965 325 53 7 chr3 124265335 124265784 -35333999 + Lx9 LINE L1 6324 6793 -851 4 1533 21 36 0 0 chr3 124266561 124266589 -35333194 + AT_rich Low_complexity Low_complexity 1 28 0 4 1533 486 281 271 22 chr3 124266768 124267045 -35332738 + ORR1E LTR MaLR 25 370 0 4 1533 306 336 17 17 chr3 124267046 124267161 -35332622 + ORR1E-int LTR MaLR 2 116 -1254 4 1533 555 261 184 20 chr3 124267170 124267420 -35332363 + ORR1E LTR MaLR 64 354 -5 4 1533 1025 338 86 32 chr3 124269567 124270397 -35329386 + Lx8 LINE L1 6067 6940 -533 4 1533 409 331 8 0 chr3 124270539 124270666 -35329117 + Lx8 LINE L1 7179 7306 -167 4 1533 485 172 231 14 chr3 124270965 124271112 -35328671 - L1_Mur3 LINE L1 -1628 4252 4074 4 1533 247 287 0 11 chr3 124271209 124271304 -35328479 - L1_Rod LINE L1 -20 5827 5734 4 1533 515 202 0 11 chr3 124272045 124272140 -35327643 + ORR1B1 LTR MaLR 1 94 -273 4 1533 787 126 47 0 chr3 124272150 124272277 -35327506 + ORR1B1 LTR MaLR 215 347 -47 4 1533 566 117 71 28 chr3 124272284 124272425 -35327358 + Lx LINE L1 6508 6654 0 4 1533 271 167 21 0 chr3 124272427 124272475 -35327308 + ORR1B1 LTR MaLR 312 360 -7 4 1533 607 258 82 143 chr3 124272823 124273066 -35326717 - MYSERV6-int LTR ERVK -3128 3009 2816 4 1533 3353 48 35 12 chr3 124273066 124273492 -35326291 - RLTR10C LTR ERVK 0 436 1 4 1533 668 259 81 140 chr3 124273492 124273782 -35326001 - MYSERV6-int LTR ERVK -1455 7504 7240 4 1533 3866 174 102 20 chr3 124274551 124275385 -35324398 + RLTR13D6 LTR ERVK 1 902 0 4 1533 361 314 44 28 chr3 124276100 124276280 -35323503 - RLTR28B LTR ERVL -42 439 257 4 1533 468 0 0 0 chr3 124276366 124276418 -35323365 + (TG)n Simple_repeat Simple_repeat 2 53 0 4 1533 278 287 92 34 chr3 124276666 124276785 -35322998 + RSINE1 SINE B4 40 165 0 4 1533 225 159 0 0 chr3 124276785 124276829 -35322954 + (CA)n Simple_repeat Simple_repeat 1 44 0 4 1533 1068 57 42 14 chr3 124277679 124277822 -35321961 + B1_Mm SINE Alu 1 147 0 4 1533 208 292 40 27 chr3 124278529 124278603 -35321180 + MIRm SINE MIR 87 161 -115 4 1533 513 173 0 0 chr3 124278723 124278750 -35321033 + A-rich Low_complexity Low_complexity 1 27 0 4 1533 1038 77 14 7 chr3 124278750 124278894 -35320889 + B1_Mm SINE Alu 3 147 0 4 1533 513 173 0 0 chr3 124278894 124279005 -35320778 + A-rich Low_complexity Low_complexity 28 138 0 4 1533 1554 100 0 0 chr3 124279097 124279317 -35320466 + L1Md_F2 LINE L1 6361 6580 -2 4 1533 328 285 111 14 chr3 124279608 124279825 -35319958 - L1M4 LINE L1 -402 5776 5539 4 1533 1125 107 23 0 chr3 124280147 124280324 -35319459 + L1_Mus3 LINE L1 6452 6632 -6 4 1533 483 18 0 0 chr3 124283010 124283066 -35316717 + (TG)n Simple_repeat Simple_repeat 2 57 0 4 1533 21 0 0 0 chr3 124283078 124283099 -35316684 + AT_rich Low_complexity Low_complexity 1 21 0 4 1533 23 33 0 0 chr3 124285028 124285058 -35314725 + AT_rich Low_complexity Low_complexity 1 30 0 4 1533 2163 129 6 6 chr3 124285722 124286049 -35313734 - ORR1A2 LTR MaLR 0 327 1 4 1533 1073 160 91 10 chr3 124286190 124286398 -35313385 - URR1B DNA MER1_type 0 225 1 4 1533 588 303 49 54 chr3 124287817 124288243 -35311540 + L1_Mur3 LINE L1 918 1341 -6387 4 1533 1635 269 57 23 chr3 124288248 124288861 -35310922 + L1_Mur3 LINE L1 2494 3127 -2753 4 1533 4549 44 0 14 chr3 124289322 124289898 -35309885 + L1Md_F3 LINE L1 6017 6584 0 4 1533 21 0 0 0 chr3 124290759 124290780 -35309003 + AT_rich Low_complexity Low_complexity 1 21 0 4 1533 290 195 0 12 chr3 124291443 124291526 -35308257 + CT-rich Low_complexity Low_complexity 2 83 0 4 1533 222 149 0 21 chr3 124292486 124292534 -35307249 + A-rich Low_complexity Low_complexity 4 50 0 4 1533 739 83 0 44 chr3 124293287 124293400 -35306383 + B1_Mus2 SINE Alu 12 119 -28 4 1533 213 39 0 0 chr3 124293698 124293724 -35306059 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 4 1533 556 363 42 20 chr3 124294014 124294371 -35305412 - Lx7 LINE L1 -573 6900 6528 4 1533 675 124 1 0 chr3 124294424 124294533 -35305250 + Lx LINE L1 5812 5931 -381 4 1533 3004 164 18 11 chr3 124294533 124295088 -35304695 + Lx LINE L1 6096 6654 0 4 1533 831 170 0 0 chr3 124295088 124295241 -35304542 + A-rich Low_complexity Low_complexity 1 153 0 4 1533 2020 103 3 23 chr3 124295270 124295577 -35304206 + ORR1A2 LTR MaLR 27 327 0 4 1533 321 315 22 65 chr3 124296190 124296329 -35303454 + ORR1E LTR MaLR 3 135 -224 4 1533 403 338 108 43 chr3 124298250 124298445 -35301338 + L1MCb LINE L1 617 840 -5205 4 1533 285 54 54 0 chr3 124298445 124298501 -35301282 + (CAA)n Simple_repeat Simple_repeat 2 60 0 4 1533 403 338 108 43 chr3 124298501 124298769 -35301014 + L1MCb LINE L1 841 1109 -4936 4 1533 217 364 66 29 chr3 124299761 124299897 -35299886 - B1_Mus1 SINE Alu -7 141 1 4 1533 254 320 155 33 chr3 124299967 124300329 -35299454 + L1MC2 LINE L1 5931 6336 -8 4 1533 288 0 0 0 chr3 124300508 124300540 -35299243 + (CA)n Simple_repeat Simple_repeat 1 32 0 4 1533 388 338 56 0 chr3 124300714 124300856 -35298927 - RMER15 LTR ERVL -22 553 404 4 1533 3390 35 2 0 chr3 124301292 124301687 -35298096 + MTA_Mm LTR MaLR 1 396 0 4 1533 182 119 0 45 chr3 124301902 124301946 -35297837 + (TAAA)n Simple_repeat Simple_repeat 2 43 0 4 1533 588 306 6 6 chr3 124302435 124302596 -35297187 + ID_B1 SINE B4 64 224 0 4 1533 300 259 0 12 chr3 124302602 124302684 -35297099 + GA-rich Low_complexity Low_complexity 4 84 0 4 1533 2998 33 0 11 chr3 124302773 124303142 -35296641 - L1Md_F2 LINE L1 -8 6574 6210 4 1533 1453 233 99 45 chr3 124303182 124303735 -35296048 + RMER6C LTR ERVK 1 583 -107 4 1533 3595 252 80 19 chr3 124303747 124304097 -35295686 + Lx5 LINE L1 6059 6440 -610 4 1533 2158 107 25 9 chr3 124304097 124304419 -35295364 + ORR1A2 LTR MaLR 1 327 0 4 1533 3595 252 80 19 chr3 124304419 124304989 -35294794 + Lx5 LINE L1 6441 7035 -15 4 1533 202 137 57 38 chr3 124305033 124305086 -35294697 + A-rich Low_complexity Low_complexity 4 57 0 4 1533 3048 20 0 0 chr3 124305711 124306057 -35293726 - ORR1A0 LTR MaLR 0 346 1 4 1533 1333 302 75 29 chr3 124306172 124306758 -35293025 - Cheshire DNA MER1_type -1221 1199 587 4 1533 23 78 0 0 chr3 124307030 124307081 -35292702 + AT_rich Low_complexity Low_complexity 1 51 0 4 1533 1381 143 118 67 chr3 124307097 124307300 -35292483 + RMER17C LTR ERVK 1 208 -202 4 1533 189 0 0 0 chr3 124307300 124307321 -35292462 + (TC)n Simple_repeat Simple_repeat 1 21 0 4 1533 1381 143 118 67 chr3 124307321 124307507 -35292276 + RMER17C LTR ERVK 209 410 0 4 1533 26 0 0 0 chr3 124307934 124307960 -35291823 + AT_rich Low_complexity Low_complexity 1 26 0 4 1533 239 227 0 0 chr3 124308809 124308853 -35290930 + (TG)n Simple_repeat Simple_repeat 1 44 0 4 1533 295 345 54 46 chr3 124309766 124310006 -35289777 + MLT1E1A LTR MaLR 409 650 -30 4 1533 373 292 11 0 chr3 124310063 124310152 -35289631 - Lx7 LINE L1 -983 6713 6624 4 1533 201 74 0 0 chr3 124310159 124310186 -35289597 + (TTTTC)n Simple_repeat Simple_repeat 3 29 0 4 1533 288 264 33 16 chr3 124310946 124311073 -35288710 - L1M2 LINE L1 -1691 4452 4288 4 1533 4704 122 14 6 chr3 124311578 124311890 -35287893 - Lx2 LINE L1 -3 6994 6676 4 1533 189 0 0 0 chr3 124311890 124311911 -35287872 + (TTGG)n Simple_repeat Simple_repeat 1 21 0 4 1533 4704 122 14 6 chr3 124311911 124312308 -35287475 - Lx2 LINE L1 -322 6675 6279 4 1533 4106 172 102 44 chr3 124312792 124313728 -35286055 - RLTR25A LTR ERVK -38 990 1 4 1533 33 25 0 0 chr3 124313730 124313770 -35286013 + AT_rich Low_complexity Low_complexity 1 40 0 4 1533 22 0 0 0 chr3 124313864 124313886 -35285897 + AT_rich Low_complexity Low_complexity 1 22 0 4 1533 237 65 0 0 chr3 124314031 124314062 -35285721 + (TG)n Simple_repeat Simple_repeat 1 31 0 4 1533 274 345 35 26 chr3 124314187 124314300 -35285483 - B4 SINE B4 -175 117 4 4 1533 184 59 0 56 chr3 124314392 124314428 -35285355 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 4 1533 1927 161 14 34 chr3 124315018 124315371 -35284412 + ORR1A1 LTR MaLR 1 346 0 4 1533 248 70 23 0 chr3 124315399 124315442 -35284341 + (TTTG)n Simple_repeat Simple_repeat 4 47 0 4 1533 396 290 30 61 chr3 124315458 124315590 -35284193 - ID_B1 SINE B4 -10 214 87 4 1533 25 0 0 0 chr3 124315762 124315787 -35283996 + AT_rich Low_complexity Low_complexity 1 25 0 4 1533 226 279 85 8 chr3 124315902 124316032 -35283751 + L1M LINE L1 5263 5402 -889 4 1533 641 284 103 31 chr3 124316038 124316358 -35283425 + RLTR15 LTR ERVK 1 343 -16 4 1533 795 113 105 0 chr3 124316904 124317028 -35282755 + B1_Mus1 SINE Alu 2 138 -10 4 1533 243 0 0 0 chr3 124317028 124317055 -35282728 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 4 1533 23 0 0 0 chr3 124317529 124317552 -35282231 + AT_rich Low_complexity Low_complexity 1 23 0 4 1533 1264 20 0 0 chr3 124317552 124317699 -35282084 - B1_Mm SINE Alu 0 147 1 4 1533 768 127 7 56 chr3 124317700 124317842 -35281941 + B1_Mur3 SINE Alu 13 147 -2 5 1533 1851 278 31 50 chr3 124317879 124318773 -35281010 + MYSERV16_I-int LTR ERVK 5 768 -1558 5 1533 468 303 45 17 chr3 124318777 124318955 -35280828 + RMER4A LTR ERVK 257 439 -27 5 1533 1356 175 81 51 chr3 124318958 124319446 -35280337 + MYSERV16_I-int LTR ERVK 7807 8204 -755 5 1533 749 127 12 37 chr3 124319481 124319645 -35280138 - Lx LINE L1 -17 6637 6478 5 1533 6248 169 102 13 chr3 124319650 124320320 -35279463 - L1_Mur1 LINE L1 -3162 2715 2050 5 1533 1249 25 13 0 chr3 124320320 124320477 -35279306 + (TC)n Simple_repeat Simple_repeat 2 160 0 5 1533 6248 195 125 18 chr3 124320477 124321663 -35278120 - L1_Mur1 LINE L1 -3828 2049 638 5 1533 32 75 0 0 chr3 124321961 124322028 -35277755 + AT_rich Low_complexity Low_complexity 1 67 0 5 1533 25 83 0 0 chr3 124322572 124322632 -35277151 + AT_rich Low_complexity Low_complexity 1 60 0 5 1533 354 80 0 0 chr3 124323991 124324041 -35275742 + (CA)n Simple_repeat Simple_repeat 1 50 0 5 1533 996 281 132 37 chr3 124324118 124324679 -35275104 + ORR1D2-int LTR MaLR 2 505 -1075 5 1533 324 0 0 0 chr3 124324679 124324715 -35275068 + (CAAAC)n Simple_repeat Simple_repeat 3 38 0 5 1533 754 315 113 65 chr3 124324715 124324841 -35274942 + ORR1D2-int LTR MaLR 506 625 -955 5 1533 26 0 0 0 chr3 124324924 124324950 -35274833 + AT_rich Low_complexity Low_complexity 1 26 0 5 1533 276 189 0 0 chr3 124325741 124325815 -35273968 + (TA)n Simple_repeat Simple_repeat 2 75 0 5 1533 433 346 29 68 chr3 124326635 124326840 -35272943 + B3A SINE B2 2 198 0 5 1533 258 154 45 15 chr3 124327060 124327126 -35272657 + (TA)n Simple_repeat Simple_repeat 1 68 0 5 1533 868 280 45 26 chr3 124327741 124328013 -35271770 + Lx9 LINE L1 7145 7417 -227 5 1533 773 30 10 0 chr3 124328013 124328113 -35271670 + (CA)n Simple_repeat Simple_repeat 2 102 0 5 1533 868 280 45 26 chr3 124328113 124328152 -35271631 + Lx9 LINE L1 7418 7461 -183 5 1533 923 89 89 0 chr3 124328692 124328827 -35270956 - B1_Mus2 SINE Alu 0 147 1 5 1533 402 410 14 9 chr3 124329585 124329804 -35269979 + MLT1G LTR MaLR 10 229 -362 5 1533 29 47 0 0 chr3 124331470 124331513 -35268270 + AT_rich Low_complexity Low_complexity 1 43 0 5 1533 779 324 5 0 chr3 124331541 124331748 -35268035 - B3 SINE B2 -1 215 8 5 1533 6834 123 31 8 chr3 124332834 124334240 -35265543 + Lx LINE L1 5198 6640 -14 5 1533 274 241 22 98 chr3 124334609 124334834 -35264949 + RMER17C LTR ERVK 69 276 -134 5 1533 2363 265 26 26 chr3 124335207 124335892 -35263891 - Lx9 LINE L1 -426 7218 6534 5 1533 34 24 0 0 chr3 124335984 124336025 -35263758 + AT_rich Low_complexity Low_complexity 1 41 0 5 1533 21 36 0 0 chr3 124336120 124336148 -35263635 + AT_rich Low_complexity Low_complexity 1 28 0 5 1533 21 0 0 0 chr3 124336631 124336652 -35263131 + AT_rich Low_complexity Low_complexity 1 21 0 5 1533 459 35 0 0 chr3 124336786 124336843 -35262940 + (CA)n Simple_repeat Simple_repeat 2 58 0 5 1533 26 0 0 0 chr3 124336844 124336870 -35262913 + AT_rich Low_complexity Low_complexity 1 26 0 5 1533 1663 206 47 44 chr3 124337001 124337553 -35262230 - RMER6C LTR ERVK -2 688 204 5 1533 736 277 50 37 chr3 124337595 124337612 -35262171 + Lx3A LINE L1 5587 5604 -560 5 1533 2346 109 26 3 chr3 124337612 124337961 -35261822 - Lx3_Mus LINE L1 -16 6993 6637 5 1533 2240 79 28 5 chr3 124337961 124338276 -35261507 + Lx3A LINE L1 5587 5913 -251 5 1533 339 260 31 20 chr3 124338276 124338374 -35261409 - RMER6C LTR ERVK -500 220 122 5 1533 28 71 0 0 chr3 124338830 124338886 -35260897 + AT_rich Low_complexity Low_complexity 1 56 0 5 1533 244 308 60 0 chr3 124339036 124339169 -35260614 + L1M2 LINE L1 5340 5480 -832 5 1533 21 71 0 0 chr3 124339875 124339917 -35259866 + AT_rich Low_complexity Low_complexity 1 42 0 5 1533 21 71 0 0 chr3 124340130 124340172 -35259611 + AT_rich Low_complexity Low_complexity 1 42 0 5 1533 469 47 0 0 chr3 124340376 124340481 -35259302 + L1_Mus2 LINE L1 6501 6566 0 5 1533 1122 90 7 0 chr3 124341093 124341238 -35258545 + B1_Mm SINE Alu 1 146 -1 5 1533 7321 151 31 72 chr3 124341549 124342068 -35257715 + Lx LINE L1 5159 5687 -196 5 1533 1961 84 7 4 chr3 124342068 124342341 -35257442 + L1_Mus2 LINE L1 6292 6565 -1 5 1533 7321 92 4 55 chr3 124342341 124343344 -35256439 + Lx LINE L1 5688 6650 -4 5 1533 21 0 0 0 chr3 124344512 124344533 -35255250 + AT_rich Low_complexity Low_complexity 1 21 0 5 1533 1732 188 23 8 chr3 124344638 124344992 -35254791 + RLTR15 LTR ERVK 1 359 0 5 1533 509 0 16 0 chr3 124345896 124345957 -35253826 + (CA)n Simple_repeat Simple_repeat 1 62 0 5 1533 873 313 46 96 chr3 124346072 124346616 -35253167 - RMER5 LTR ERV1 -12 522 6 5 1533 3023 148 109 16 chr3 124347473 124348104 -35251679 - RMER6C LTR ERVK 0 690 1 5 1533 2019 78 10 48 chr3 124348380 124348691 -35251092 - L1_Mus3 LINE L1 0 6638 6340 5 1533 1148 281 41 24 chr3 124348706 124348911 -35250872 + L1_Rod LINE L1 708 913 -6695 5 1533 207 0 0 0 chr3 124348911 124348934 -35250849 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 5 1533 1148 281 41 24 chr3 124348934 124349147 -35250636 + L1_Rod LINE L1 914 1132 -6476 5 1533 238 115 16 16 chr3 124349185 124349247 -35250536 + (CAAA)n Simple_repeat Simple_repeat 2 63 0 5 1533 7677 44 2 0 chr3 124349308 124350233 -35249550 + L1Md_F2 LINE L1 5644 6570 -12 5 1533 675 239 22 44 chr3 124350256 124350398 -35249385 + L1_Rod LINE L1 1108 1247 -6361 5 1533 1515 63 0 0 chr3 124350398 124350587 -35249196 + B2_Mm1t SINE B2 2 190 -3 5 1533 675 246 96 36 chr3 124350587 124350879 -35248904 + L1_Rod LINE L1 1248 1574 -4273 5 1533 1649 276 71 27 chr3 124350922 124351446 -35248337 - Lx6 LINE L1 -1 7459 6913 5 1533 1470 38 0 0 chr3 124351564 124351791 -35247992 + L1Md_A LINE L1 6399 6582 0 5 1533 932 283 49 20 chr3 124352898 124353305 -35246478 - MTD LTR MaLR 0 419 1 5 1533 227 254 15 15 chr3 124353948 124354016 -35245767 - MTE2b LTR MaLR -25 354 287 5 1533 1032 196 105 5 chr3 124354800 124355010 -35244773 - Lx5 LINE L1 0 7050 6820 5 1533 939 354 52 21 chr3 124355104 124355569 -35244214 - LTR16C LTR ERVL -10 479 1 5 1533 23 33 0 0 chr3 124355600 124355630 -35244153 + AT_rich Low_complexity Low_complexity 1 30 0 5 1533 577 237 253 77 chr3 124356284 124356537 -35243246 + RMER1C Other Other 947 1225 -117 5 1533 267 31 0 0 chr3 124356537 124356569 -35243214 + (TG)n Simple_repeat Simple_repeat 1 32 0 5 1533 577 211 49 134 chr3 124356569 124356676 -35243107 + RMER1C Other Other 1226 1342 0 5 1533 206 244 0 0 chr3 124356676 124356717 -35243066 + A-rich Low_complexity Low_complexity 1 41 0 5 1533 2245 261 73 7 chr3 124357145 124357721 -35242062 - Lx5 LINE L1 -21 7029 6416 5 1533 1003 262 56 35 chr3 124358005 124358380 -35241403 - L1M2 LINE L1 -564 5727 5345 5 1533 29 28 0 0 chr3 124358972 124359008 -35240775 + AT_rich Low_complexity Low_complexity 1 36 0 5 1533 515 311 12 18 chr3 124359881 124360051 -35239732 + B3 SINE B2 48 216 0 5 1533 2354 68 171 38 chr3 124360627 124361012 -35238771 + L1_Mus2 LINE L1 6131 6566 0 5 1533 800 55 0 18 chr3 124361410 124361521 -35238262 + (GAAA)n Simple_repeat Simple_repeat 1 109 0 5 1533 1070 280 61 36 chr3 124362360 124362637 -35237146 + Lx7 LINE L1 5451 5739 -552 5 1533 1876 180 258 32 chr3 124362637 124363200 -35236583 + RMER6C LTR ERVK 1 690 0 5 1533 1070 312 60 41 chr3 124363200 124363690 -35236093 + Lx7 LINE L1 5708 6212 -1484 5 1533 703 297 101 15 chr3 124363701 124364015 -35235768 - ORR1D2 LTR MaLR -1 418 24 5 1533 282 288 0 15 chr3 124364173 124364240 -35235543 + Lx7 LINE L1 6815 6880 -816 5 1533 377 358 38 49 chr3 124364364 124364549 -35235234 + Lx8 LINE L1 7074 7256 -217 5 1533 255 306 36 18 chr3 124364606 124364716 -35235067 - Lx7 LINE L1 -579 7117 7006 5 1533 244 298 0 0 chr3 124364731 124364778 -35235005 - ID SINE ID -151 73 27 5 1533 383 303 95 18 chr3 124364811 124365033 -35234750 - MER31-int LTR ERV1 -3972 964 726 5 1533 275 345 75 37 chr3 124365812 124365999 -35233784 - MER67C LTR ERV1 -313 398 205 5 1533 333 0 0 0 chr3 124366128 124366165 -35233618 + (CA)n Simple_repeat Simple_repeat 2 38 0 5 1533 423 0 0 0 chr3 124366165 124366211 -35233572 + (GA)n Simple_repeat Simple_repeat 2 48 0 5 1533 1095 30 0 0 chr3 124366360 124366491 -35233292 + (CA)n Simple_repeat Simple_repeat 1 131 0 5 1533 2179 336 40 29 chr3 124366496 124367589 -35232194 + Lx9 LINE L1 6355 7459 -185 5 1533 3479 28 0 0 chr3 124367599 124367995 -35231788 - MTA_Mm LTR MaLR 0 396 1 5 1533 243 246 16 0 chr3 124368010 124368071 -35231712 + (TG)n Simple_repeat Simple_repeat 2 63 0 5 1533 450 53 0 0 chr3 124368198 124368255 -35231528 + (TAA)n Simple_repeat Simple_repeat 1 57 0 5 1533 1392 65 0 21 chr3 124368365 124368554 -35231229 - B2_Mm1a SINE B2 -8 185 1 5 1533 184 323 0 16 chr3 124369040 124369103 -35230680 + MIRm SINE MIR 166 227 -49 5 1533 31 44 0 0 chr3 124370158 124370203 -35229580 + AT_rich Low_complexity Low_complexity 1 45 0 5 1533 521 294 57 38 chr3 124370349 124370561 -35229222 + B3 SINE B2 1 216 0 5 1533 21 36 0 0 chr3 124370561 124370589 -35229194 + AT_rich Low_complexity Low_complexity 1 28 0 5 1533 443 283 45 32 chr3 124370789 124370946 -35228837 + RSINE1 SINE B4 1 159 -6 5 1533 24 32 0 0 chr3 124371761 124371792 -35227991 + AT_rich Low_complexity Low_complexity 1 31 0 5 1533 3711 83 12 14 chr3 124372166 124372678 -35227105 - L1_Mus1 LINE L1 -2 6565 6055 5 1533 25 0 0 0 chr3 124372760 124372785 -35226998 + AT_rich Low_complexity Low_complexity 1 25 0 5 1533 340 222 189 0 chr3 124372794 124372884 -35226899 + ORR1D2 LTR MaLR 256 362 -8 5 1533 207 0 0 0 chr3 124373127 124373150 -35226633 + (CAAA)n Simple_repeat Simple_repeat 4 26 0 5 1533 305 174 0 14 chr3 124373258 124373328 -35226455 + (CAAA)n Simple_repeat Simple_repeat 2 70 0 5 1533 1443 72 0 5 chr3 124373488 124373708 -35226075 + L1_Mus1 LINE L1 6364 6567 0 5 1533 437 265 83 32 chr3 124373907 124374063 -35225720 + MER5A1 DNA MER1_type 1 164 -2 5 1533 207 0 0 0 chr3 124374301 124374324 -35225459 + (TC)n Simple_repeat Simple_repeat 2 24 0 5 1533 836 203 65 31 chr3 124374333 124374562 -35225221 - Lx4B LINE L1 0 7058 6822 5 1533 183 42 0 0 chr3 124374924 124374948 -35224835 + (CAAAAA)n Simple_repeat Simple_repeat 2 25 0 5 1533 24 0 0 0 chr3 124374951 124374975 -35224808 + AT_rich Low_complexity Low_complexity 1 24 0 5 1533 641 253 66 83 chr3 124375340 124375629 -35224154 - RLTR42-int LTR ERVK -2670 2852 2569 6 1533 2965 78 8 0 chr3 124375935 124376330 -35223453 - MTB LTR MaLR 0 400 3 6 1533 21 0 0 0 chr3 124376805 124376826 -35222957 + AT_rich Low_complexity Low_complexity 1 21 0 6 1533 1215 167 0 9 chr3 124377211 124377429 -35222354 - Lx2 LINE L1 0 6997 6782 6 1533 659 263 26 31 chr3 124377875 124378067 -35221716 + Lx8 LINE L1 6596 6786 -687 6 1533 2176 90 26 0 chr3 124378073 124378384 -35221399 - ORR1A2 LTR MaLR -8 319 1 6 1533 409 355 88 23 chr3 124378470 124378776 -35221007 + Lx8 LINE L1 6948 7273 -200 6 1533 303 316 109 26 chr3 124378832 124379024 -35220759 + B3 SINE B2 1 208 -8 6 1533 405 269 11 21 chr3 124379114 124379209 -35220574 + B3A SINE B2 4 97 -101 6 1533 867 89 0 0 chr3 124379464 124379599 -35220184 + (TG)n Simple_repeat Simple_repeat 2 136 0 6 1533 29 0 0 0 chr3 124380012 124380041 -35219742 + AT_rich Low_complexity Low_complexity 1 29 0 6 1533 361 368 7 14 chr3 124380641 124380779 -35219004 - B1F SINE Alu -3 146 10 6 1533 15290 50 5 1 chr3 124381084 124383007 -35216776 - L1_Mm LINE L1 -647 5236 3306 6 1533 1650 36 5 0 chr3 124383007 124383203 -35216580 + L1Md_F3 LINE L1 5389 5585 -298 6 1533 7623 55 11 3 chr3 124383204 124384180 -35215603 + L1Md_F3 LINE L1 5587 6570 -14 6 1533 21 36 0 0 chr3 124384907 124384935 -35214848 + AT_rich Low_complexity Low_complexity 1 28 0 6 1533 529 288 144 37 chr3 124385276 124385869 -35213914 + Lx8 LINE L1 5501 6148 -1325 6 1533 246 293 0 0 chr3 124385921 124386003 -35213780 + (TA)n Simple_repeat Simple_repeat 2 83 0 6 1533 1054 327 172 30 chr3 124386091 124386481 -35213302 + Lx8 LINE L1 6271 6660 -813 6 1533 2155 98 9 24 chr3 124386481 124386815 -35212968 + L1_Mus3 LINE L1 6304 6632 -6 6 1533 1054 327 172 30 chr3 124386815 124387291 -35212492 + Lx8 LINE L1 6661 7260 -213 6 1534 297 0 0 0 chr3 124388033 124388066 -35211717 + (TAAA)n Simple_repeat Simple_repeat 2 34 0 6 1534 342 175 111 12 chr3 124388279 124388360 -35211423 + MER67D LTR ERV1 50 138 -376 6 1534 314 300 128 24 chr3 124388508 124388798 -35210985 - L1M2 LINE L1 -950 5193 4874 6 1534 801 223 311 32 chr3 124388905 124389282 -35210501 + Lx6 LINE L1 6967 7448 -12 6 1534 7892 158 26 24 chr3 124389304 124390392 -35209391 + Lx2B LINE L1 4766 5851 -35 6 1534 2481 91 147 21 chr3 124390392 124390820 -35208963 + RLTR45 LTR ERVK 1 482 0 6 1534 7892 146 46 14 chr3 124390820 124391130 -35208653 + Lx2B LINE L1 5849 6158 -842 6 1534 396 0 0 0 chr3 124391130 124391174 -35208609 + (TG)n Simple_repeat Simple_repeat 2 45 0 6 1534 7892 146 46 14 chr3 124391174 124391958 -35207825 + Lx2B LINE L1 6159 6994 -6 6 1534 575 293 38 67 chr3 124391960 124392483 -35207300 + L1M1 LINE L1 5293 5800 -500 6 1534 3076 195 62 6 chr3 124392626 124393251 -35206532 - Lx2B LINE L1 -4 6996 6337 6 1534 1609 168 20 7 chr3 124393250 124393550 -35206233 + L1_Mur2 LINE L1 3985 4288 -1589 6 1534 883 259 20 12 chr3 124393812 124394058 -35205725 - Lx9 LINE L1 -281 7363 7116 6 1534 609 58 0 0 chr3 124394086 124394172 -35205611 + (TCTA)n Simple_repeat Simple_repeat 1 86 0 6 1534 527 256 39 57 chr3 124394639 124394822 -35204961 - B3 SINE B2 0 216 27 6 1534 1042 116 0 0 chr3 124394822 124394968 -35204815 - B1_Mus2 SINE Alu 0 147 2 6 1534 233 108 27 3 chr3 124394968 124395008 -35204775 - B3A SINE B2 -171 45 1 6 1534 615 222 17 0 chr3 124395015 124395132 -35204651 + B3A SINE B2 38 156 -42 6 1534 1827 63 0 0 chr3 124395274 124395496 -35204287 + L1Md_F2 LINE L1 5365 5586 -297 6 1534 7669 51 21 3 chr3 124395497 124396474 -35203309 + L1Md_F2 LINE L1 5588 6582 0 6 1534 26 64 0 0 chr3 124396497 124396544 -35203239 + AT_rich Low_complexity Low_complexity 1 47 0 6 1534 24 0 0 0 chr3 124396912 124396936 -35202847 + AT_rich Low_complexity Low_complexity 1 24 0 6 1534 957 190 0 35 chr3 124398483 124398685 -35201098 - Lx LINE L1 -2 6652 6458 6 1534 7908 169 28 5 chr3 124398688 124400217 -35199566 - L1_Mur2 LINE L1 -514 5363 3799 6 1534 401 318 43 27 chr3 124401546 124401780 -35198003 - Lx7 LINE L1 -575 6898 6658 6 1534 256 350 80 30 chr3 124401770 124402032 -35197751 + Lx8 LINE L1 7171 7445 -28 6 1534 335 307 68 40 chr3 124402282 124402530 -35197253 - L1MA8 LINE L1 -36 6255 6001 6 1534 1467 84 10 0 chr3 124402618 124402820 -35196963 + L1_Mus1 LINE L1 6363 6566 -1 6 1534 289 219 28 19 chr3 124402825 124402932 -35196851 + A-rich Low_complexity Low_complexity 2 109 0 6 1534 708 254 15 30 chr3 124402959 124403162 -35196621 - L1_Rod LINE L1 -219 5628 5429 6 1534 1727 134 40 20 chr3 124403395 124403692 -35196091 - L1_Mus4 LINE L1 -5 6631 6329 6 1534 1520 254 90 62 chr3 124404009 124404611 -35195172 + RLTR40 LTR ERVK 19 670 -147 6 1534 258 32 0 0 chr3 124404611 124404642 -35195141 + (CAGA)n Simple_repeat Simple_repeat 4 34 0 6 1534 303 243 37 46 chr3 124404642 124404724 -35195059 + RLTR40 LTR ERVK 671 754 -63 6 1534 504 0 0 0 chr3 124405297 124405353 -35194430 + (TA)n Simple_repeat Simple_repeat 2 57 0 6 1534 239 226 168 21 chr3 124405938 124406033 -35193750 + MER2 DNA MER2_type 153 261 -84 6 1534 205 354 21 0 chr3 124406141 124406237 -35193546 + CT-rich Low_complexity Low_complexity 2 99 0 6 1534 527 334 88 50 chr3 124406426 124406924 -35192859 + Tigger6a DNA MER2_type 203 719 -364 6 1534 192 77 0 0 chr3 124407704 124407730 -35192053 + (TC)n Simple_repeat Simple_repeat 1 26 0 6 1534 257 296 57 46 chr3 124408295 124408595 -35191188 - L1M5 LINE L1 -2183 3963 3665 6 1534 345 295 0 0 chr3 124408818 124408930 -35190853 + Lx7 LINE L1 5633 5744 -1952 6 1534 441 0 0 0 chr3 124409750 124409799 -35189984 + (CA)n Simple_repeat Simple_repeat 2 50 0 6 1534 23 0 0 0 chr3 124409799 124409822 -35189961 + AT_rich Low_complexity Low_complexity 1 23 0 6 1534 189 0 0 0 chr3 124410446 124410467 -35189316 + (TTAA)n Simple_repeat Simple_repeat 2 22 0 6 1534 244 355 19 9 chr3 124410467 124410575 -35189208 - B1F SINE Alu -8 141 33 6 1534 3080 106 7 2 chr3 124410651 124411107 -35188676 + Lx3A LINE L1 6515 6972 -9 6 1534 2904 91 0 0 chr3 124411152 124411550 -35188233 - L1_Mur1 LINE L1 -780 5106 4709 6 1534 3997 117 46 12 chr3 124411550 124412187 -35187596 + Lx3A LINE L1 6308 6966 -15 6 1534 216 0 0 0 chr3 124412187 124412211 -35187572 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 6 1534 550 59 9 47 chr3 124412277 124412383 -35187400 - Lx LINE L1 -6 6648 6547 6 1534 348 78 0 0 chr3 124412524 124412575 -35187208 - L1_Mus2 LINE L1 0 6566 6516 6 1534 22 80 0 0 chr3 124412618 124412668 -35187115 + AT_rich Low_complexity Low_complexity 1 50 0 6 1534 23 33 0 0 chr3 124413034 124413064 -35186719 + AT_rich Low_complexity Low_complexity 1 30 0 6 1534 500 361 16 16 chr3 124413161 124413344 -35186439 - ID_B1 SINE B4 -21 203 21 6 1534 2136 262 159 25 chr3 124413423 124414168 -35185615 + L1_Rod LINE L1 1569 2464 -3383 6 1534 998 30 15 7 chr3 124414168 124414304 -35185479 - L1Md_F3 LINE L1 -2 6582 6446 6 1534 2136 262 159 25 chr3 124414304 124414576 -35185207 + L1_Rod LINE L1 2465 2742 -3105 6 1534 333 93 0 0 chr3 124414576 124414630 -35185153 + (CA)n Simple_repeat Simple_repeat 2 55 0 6 1534 2136 262 159 25 chr3 124414630 124414837 -35184946 + L1_Rod LINE L1 2743 2958 -2889 6 1534 183 80 0 0 chr3 124416348 124416373 -35183410 + (TTTA)n Simple_repeat Simple_repeat 4 28 0 6 1534 6376 194 50 44 chr3 124416375 124417807 -35181976 - Lx5 LINE L1 -15 7035 5595 6 1534 14560 183 38 126 chr3 124417803 124420596 -35179187 - Lx5 LINE L1 -706 5171 2792 6 1534 234 0 0 0 chr3 124420596 124420622 -35179161 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 6 1534 14560 183 38 126 chr3 124420622 124421356 -35178427 - Lx5 LINE L1 -3086 2791 2052 6 1534 627 81 0 0 chr3 124421356 124421442 -35178341 + (TC)n Simple_repeat Simple_repeat 2 87 0 6 1534 423 0 0 0 chr3 124421442 124421488 -35178295 + (TG)n Simple_repeat Simple_repeat 2 48 0 6 1534 14560 194 48 103 chr3 124421488 124422525 -35177258 - Lx5 LINE L1 -3826 2051 919 6 1534 264 59 0 0 chr3 124422525 124422559 -35177224 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 6 1534 959 237 84 19 chr3 124422559 124422627 -35177156 - Lx5 LINE L1 -6168 918 847 6 1534 258 81 0 0 chr3 124423187 124423224 -35176559 + (CTA)n Simple_repeat Simple_repeat 2 38 0 6 1534 605 47 12 0 chr3 124424019 124424104 -35175679 + (CA)n Simple_repeat Simple_repeat 1 86 0 6 1534 823 86 121 7 chr3 124426472 124426533 -35173250 + L1_Mus3 LINE L1 6476 6538 -100 6 1534 189 0 0 0 chr3 124426533 124426554 -35173229 + (AGGGGG)n Simple_repeat Simple_repeat 1 21 0 6 1534 823 86 121 7 chr3 124426554 124426632 -35173151 + L1_Mus3 LINE L1 6539 6631 -7 6 1534 423 0 0 0 chr3 124427412 124427459 -35172324 + (CA)n Simple_repeat Simple_repeat 2 48 0 6 1534 3636 86 15 10 chr3 124427629 124428147 -35171636 - L1Md_F2 LINE L1 0 6582 6062 6 1534 2480 45 45 0 chr3 124428203 124428515 -35171268 - IAPLTR3 LTR ERVK 0 326 1 6 1534 1189 254 39 12 chr3 124428856 124429031 -35170752 - L1_Mur3 LINE L1 -1456 4424 4245 6 1534 222 37 0 0 chr3 124429031 124429058 -35170725 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 6 1534 1189 254 39 12 chr3 124429058 124429289 -35170494 - L1_Mur3 LINE L1 -1636 4244 4008 6 1534 306 73 0 0 chr3 124429347 124429388 -35170395 + (CA)n Simple_repeat Simple_repeat 2 42 0 6 1534 726 141 11 5 chr3 124429580 124429715 -35170068 + Lx4B LINE L1 5526 5657 -532 6 1534 3144 209 127 15 chr3 124429845 124430660 -35169123 + Lx4B LINE L1 5649 6555 -503 6 1534 210 37 0 0 chr3 124430660 124430687 -35169096 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 6 1534 1734 234 185 57 chr3 124430687 124431114 -35168669 + Lx4B LINE L1 6556 7036 -22 6 1534 198 0 0 0 chr3 124431119 124431141 -35168642 + (TTAA)n Simple_repeat Simple_repeat 2 23 0 6 1534 204 40 0 0 chr3 124432481 124432506 -35167277 + (TA)n Simple_repeat Simple_repeat 1 25 0 6 1534 224 0 0 61 chr3 124434059 124434092 -35165691 + (TTTTG)n Simple_repeat Simple_repeat 3 33 0 6 1534 297 162 0 0 chr3 124434129 124434197 -35165586 + (TG)n Simple_repeat Simple_repeat 2 69 0 6 1534 585 328 75 8 chr3 124434197 124434449 -35165334 - Lx9 LINE L1 -1049 6595 6327 6 1534 1282 45 11 0 chr3 124434450 124434628 -35165155 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 6 1534 236 328 80 70 chr3 124434676 124434876 -35164907 - B3 SINE B2 -13 203 2 6 1534 229 353 29 0 chr3 124435301 124435403 -35164380 + (CATG)n Simple_repeat Simple_repeat 3 107 0 6 1534 276 283 0 0 chr3 124435342 124435402 -35164381 + (CACG)n Simple_repeat Simple_repeat 4 63 0 6 1534 1472 196 77 19 chr3 124435482 124435840 -35163943 - ORR1B2 LTR MaLR 0 394 6 6 1534 270 0 0 0 chr3 124436142 124436172 -35163611 + (TTTG)n Simple_repeat Simple_repeat 1 30 0 6 1534 1099 67 0 0 chr3 124436172 124436306 -35163477 - B1_Mm SINE Alu -13 134 1 6 1534 387 271 45 30 chr3 124436426 124436559 -35163224 - ERVL-int LTR ERVL -943 4814 4680 6 1534 648 337 75 69 chr3 124436662 124437386 -35162397 - ERVL-int LTR ERVL -1112 4602 3875 6 1534 22 35 0 0 chr3 124437490 124437519 -35162264 + AT_rich Low_complexity Low_complexity 1 29 0 7 1534 279 310 114 23 chr3 124437582 124437757 -35162026 - ERVL-int LTR ERVL -2083 3674 3484 6 1534 402 39 0 0 chr3 124437790 124437842 -35161941 + (TG)n Simple_repeat Simple_repeat 2 53 0 7 1534 453 290 122 67 chr3 124437842 124438282 -35161501 + RLTR11B LTR ERVK 11 526 -2 7 1534 812 317 106 29 chr3 124438571 124439155 -35160628 - ERVL-int LTR ERVL -2409 3348 2720 6 1534 907 231 83 43 chr3 124439513 124439913 -35159870 + L1_Rod LINE L1 3046 3461 -2386 7 1534 423 0 0 0 chr3 124440014 124440061 -35159722 + (CA)n Simple_repeat Simple_repeat 2 48 0 7 1534 204 40 0 0 chr3 124440074 124440099 -35159684 + (GGA)n Simple_repeat Simple_repeat 1 25 0 7 1534 485 301 66 10 chr3 124440125 124440323 -35159460 - MTEb LTR MaLR -12 367 159 7 1534 32 26 0 0 chr3 124440943 124440982 -35158801 + AT_rich Low_complexity Low_complexity 1 39 0 7 1534 283 150 100 0 chr3 124441093 124441153 -35158630 + L1_Rod LINE L1 3475 3540 -2307 7 1534 1572 232 23 46 chr3 124441216 124441609 -35158174 - Lx5 LINE L1 -1 7049 6666 7 1534 2529 206 21 16 chr3 124441609 124442254 -35157529 + Lx5 LINE L1 5940 6650 -400 7 1534 890 252 58 11 chr3 124442254 124442531 -35157252 - Lx7 LINE L1 -7 7689 7400 7 1534 634 228 38 0 chr3 124442648 124442806 -35156977 + Lx7 LINE L1 7011 7174 -522 7 1534 452 232 20 10 chr3 124442829 124442929 -35156854 + Lx7 LINE L1 7161 7261 -435 7 1534 2755 65 3 0 chr3 124442955 124443309 -35156474 - L1_Mus1 LINE L1 0 6567 6213 7 1534 2787 79 5 0 chr3 124443309 124443678 -35156105 + L1_Mus1 LINE L1 5843 6213 -354 7 1534 1433 289 71 28 chr3 124443667 124444452 -35155331 + L1_Rod LINE L1 3535 4408 -1469 7 1534 241 274 127 27 chr3 124445711 124445861 -35153922 + L1M2 LINE L1 5208 5372 -771 7 1534 237 159 0 0 chr3 124445889 124445933 -35153850 + (ATGGTG)n Simple_repeat Simple_repeat 6 49 0 7 1534 3644 201 18 56 chr3 124445933 124446718 -35153065 - Lx4A LINE L1 -4 7054 6300 7 1534 215 29 88 0 chr3 124447376 124447410 -35152373 + (TATATG)n Simple_repeat Simple_repeat 2 38 0 7 1534 306 339 0 117 chr3 124447412 124447549 -35152234 + B1_Mur4 SINE Alu 10 130 -20 7 1534 1132 195 27 77 chr3 124447587 124447887 -35151896 - RLTR15 LTR ERVK -32 327 43 7 1534 308 370 52 7 chr3 124447896 124448051 -35151732 + B3 SINE B2 53 214 -2 7 1534 218 235 0 19 chr3 124448051 124448103 -35151680 + (TATATG)n Simple_repeat Simple_repeat 2 52 0 7 1534 235 193 17 34 chr3 124448271 124448291 -35151492 + (TG)n Simple_repeat Simple_repeat 1 20 0 7 1534 186 43 0 0 chr3 124448291 124448314 -35151469 + (CATA)n Simple_repeat Simple_repeat 3 25 0 7 1534 235 193 17 34 chr3 124448314 124448352 -35151431 + (TG)n Simple_repeat Simple_repeat 1 38 0 7 1534 980 34 8 0 chr3 124448803 124448920 -35150863 + L1Md_F2 LINE L1 5990 6107 -475 7 1534 1405 162 9 13 chr3 124448909 124449140 -35150643 - Lx LINE L1 -397 6257 6028 7 1534 2181 69 26 13 chr3 124449145 124449454 -35150329 + Lx LINE L1 5706 6018 -636 7 1534 255 308 0 71 chr3 124449674 124449786 -35149997 + L1_Rod LINE L1 1797 1900 -3947 7 1534 1374 319 65 28 chr3 124449801 124449978 -35149805 + Lx7 LINE L1 6588 6784 -912 7 1534 2395 97 78 10 chr3 124449978 124450363 -35149420 + IAPLTR2a LTR ERVK 1 411 0 7 1534 1374 319 65 28 chr3 124450363 124450872 -35148911 + Lx7 LINE L1 6785 7300 -396 7 1534 220 141 15 30 chr3 124450903 124450969 -35148814 + T-rich Low_complexity Low_complexity 1 65 0 7 1534 198 0 0 0 chr3 124451141 124451163 -35148620 + (TTTTA)n Simple_repeat Simple_repeat 2 23 0 7 1534 1051 102 0 0 chr3 124451163 124451300 -35148483 - B1_Mus2 SINE Alu -10 137 1 7 1534 1491 111 4 4 chr3 124451586 124451821 -35147962 + Lx2 LINE L1 6763 6997 0 7 1534 183 42 0 0 chr3 124452134 124452158 -35147625 + (TTG)n Simple_repeat Simple_repeat 2 25 0 7 1534 519 333 43 28 chr3 124452839 124453234 -35146549 - L1MA6 LINE L1 -257 6043 5643 7 1534 360 0 0 0 chr3 124453606 124453646 -35146137 + (CA)n Simple_repeat Simple_repeat 2 41 0 7 1534 630 230 157 95 chr3 124453646 124454035 -35145748 + Lx7 LINE L1 7258 7670 -26 7 1534 492 358 57 46 chr3 124454556 124454837 -35144946 + B4A SINE B4 1 284 -8 7 1534 21 0 0 0 chr3 124454900 124454921 -35144862 + AT_rich Low_complexity Low_complexity 1 21 0 7 1534 364 356 10 0 chr3 124456240 124456341 -35143442 + PB1D10 SINE Alu 10 111 -6 7 1534 35 78 0 0 chr3 124456374 124456451 -35143332 + AT_rich Low_complexity Low_complexity 1 77 0 7 1534 273 228 0 34 chr3 124456721 124456780 -35143003 - Lx6 LINE L1 -344 7116 7060 7 1534 345 241 25 0 chr3 124456814 124456893 -35142890 + 5S rRNA rRNA 11 91 -30 7 1534 464 241 29 36 chr3 124457161 124457299 -35142484 - L1_Rod LINE L1 -6540 632 496 7 1534 186 43 0 0 chr3 124457504 124457527 -35142256 + (TTCC)n Simple_repeat Simple_repeat 3 25 0 7 1534 535 218 82 0 chr3 124457529 124457639 -35142144 - B1_Mus2 SINE Alu 0 147 29 7 1534 36 0 0 0 chr3 124457909 124457945 -35141838 + AT_rich Low_complexity Low_complexity 1 36 0 7 1534 432 0 0 0 chr3 124458025 124458073 -35141710 + (CA)n Simple_repeat Simple_repeat 2 49 0 7 1534 207 146 0 0 chr3 124459448 124459489 -35140294 + (CA)n Simple_repeat Simple_repeat 1 41 0 7 1534 22 0 0 0 chr3 124459579 124459601 -35140182 + AT_rich Low_complexity Low_complexity 1 22 0 7 1534 289 347 108 7 chr3 124459639 124459787 -35139996 - RSINE1 SINE B4 0 165 3 7 1534 542 342 29 95 chr3 124460904 124461250 -35138533 - MTE2a LTR MaLR 0 379 57 7 1534 1294 105 16 10 chr3 124461437 124461629 -35138154 - B2_Mm2 SINE B2 -1 194 2 7 1534 260 228 37 149 chr3 124461677 124461811 -35137972 + RMER12 LTR ERVK 743 861 -461 7 1534 24 0 0 0 chr3 124461852 124461876 -35137907 + AT_rich Low_complexity Low_complexity 1 24 0 7 1534 25 0 0 0 chr3 124462256 124462281 -35137502 + AT_rich Low_complexity Low_complexity 1 25 0 7 1534 577 325 21 129 chr3 124462657 124462943 -35136840 - MTE2a LTR MaLR -122 257 3 7 1534 650 294 12 35 chr3 124463081 124463250 -35136533 + B3 SINE B2 52 216 0 7 1534 3177 187 5 13 chr3 124463270 124463871 -35135912 + ORR1A2-int LTR MaLR 45 640 -1323 7 1534 478 283 43 184 chr3 124463913 124464212 -35135571 + MT2B2 LTR ERVL 1 257 -327 7 1534 4532 196 67 103 chr3 124464097 124465382 -35134401 + ORR1A2-int LTR MaLR 711 1948 -15 7 1534 643 186 121 0 chr3 124465386 124465526 -35134257 + ORR1A2 LTR MaLR 98 254 -140 7 1534 650 120 20 0 chr3 124465524 124465624 -35134159 + ORR1A2 LTR MaLR 224 325 -2 7 1534 2006 77 28 16 chr3 124466663 124466981 -35132802 + RLTRETN_Mm LTR ERVK 1 322 0 7 1534 14504 131 22 14 chr3 124466981 124469557 -35130226 + ETnERV-int LTR ERVK 1 2479 -3688 7 1534 434 90 0 0 chr3 124469558 124469625 -35130158 - RLTRETN_Mm LTR ERVK -255 67 1 7 1534 504 0 0 0 chr3 124470291 124470347 -35129436 + (GAAA)n Simple_repeat Simple_repeat 4 59 0 7 1534 249 339 180 22 chr3 124470598 124470960 -35128823 - L2 LINE L2 -1522 1897 1479 7 1534 32 26 0 0 chr3 124471256 124471295 -35128488 + AT_rich Low_complexity Low_complexity 1 39 0 7 1534 25 0 0 0 chr3 124471525 124471550 -35128233 + AT_rich Low_complexity Low_complexity 1 25 0 7 1534 25 0 0 0 chr3 124471691 124471716 -35128067 + AT_rich Low_complexity Low_complexity 1 25 0 7 1534 301 337 117 20 chr3 124474165 124474362 -35125421 - B3 SINE B2 0 216 1 7 1534 222 91 0 0 chr3 124474452 124474485 -35125298 + (TG)n Simple_repeat Simple_repeat 2 34 0 7 1534 24 77 0 0 chr3 124474624 124474676 -35125107 + AT_rich Low_complexity Low_complexity 1 52 0 7 1534 28 71 0 0 chr3 124474921 124474977 -35124806 + AT_rich Low_complexity Low_complexity 1 56 0 7 1534 1186 254 108 87 chr3 124475339 124475903 -35123880 - Lx9 LINE L1 -23 7621 7046 7 1534 229 260 0 0 chr3 124476493 124476543 -35123240 + CT-rich Low_complexity Low_complexity 1 50 0 7 1534 200 111 0 27 chr3 124476547 124476584 -35123199 + (TCCCC)n Simple_repeat Simple_repeat 4 39 0 7 1534 702 356 16 16 chr3 124476660 124476908 -35122875 - B4 SINE B4 -6 286 39 7 1534 3994 134 52 14 chr3 124476914 124477179 -35122604 + Lx3A LINE L1 6262 6525 -456 7 1534 207 0 0 0 chr3 124477179 124477202 -35122581 + (CACCC)n Simple_repeat Simple_repeat 4 26 0 7 1534 3994 134 52 14 chr3 124477202 124477624 -35122159 + Lx3A LINE L1 6526 6975 -6 7 1534 206 91 0 83 chr3 124477632 124477680 -35122103 + A-rich Low_complexity Low_complexity 2 45 0 7 1534 183 193 16 66 chr3 124478291 124478352 -35121431 + L3 LINE CR1 1237 1294 -3195 7 1534 659 71 0 10 chr3 124478476 124478575 -35121208 + (CA)n Simple_repeat Simple_repeat 2 99 0 7 1534 1166 204 185 10 chr3 124478594 124478896 -35120887 + Lx6 LINE L1 6398 6752 -708 7 1534 866 179 0 6 chr3 124478896 124479070 -35120713 + GA-rich Low_complexity Low_complexity 1 173 0 7 1534 189 0 0 0 chr3 124479077 124479098 -35120685 + (GAAA)n Simple_repeat Simple_repeat 1 21 0 7 1534 979 250 53 15 chr3 124479098 124479354 -35120429 + Lx7 LINE L1 6761 7026 -670 7 1534 710 318 13 9 chr3 124479360 124479585 -35120198 - MTE-int LTR MaLR -1338 242 17 7 1534 699 252 116 0 chr3 124479592 124479790 -35119993 + URR1A DNA MER1_type 5 225 -1 7 1534 438 321 204 11 chr3 124479802 124480081 -35119702 - MTEb LTR MaLR -35 344 12 7 1534 929 285 16 8 chr3 124480081 124480325 -35119458 - MTD LTR MaLR 0 419 174 7 1534 257 118 38 38 chr3 124480415 124480468 -35119315 + L1_Rod LINE L1 1459 1511 -4336 7 1534 2743 251 78 5 chr3 124480469 124481253 -35118530 + Lx9 LINE L1 6798 7638 -6 7 1534 446 257 300 67 chr3 124481550 124481936 -35117847 - Lx9 LINE L1 -228 7416 6941 7 1534 233 274 53 30 chr3 124481920 124482052 -35117731 + Lx9 LINE L1 7510 7644 0 7 1534 260 198 162 0 chr3 124482331 124482442 -35117341 - L1MA8 LINE L1 -78 6213 6085 7 1534 388 104 0 49 chr3 124483980 124484061 -35115722 + Lx3_Mus LINE L1 6933 7009 0 7 1534 203 211 19 0 chr3 124485148 124485200 -35114583 + T-rich Low_complexity Low_complexity 5 57 0 7 1534 369 0 0 0 chr3 124485516 124485557 -35114226 + (TC)n Simple_repeat Simple_repeat 2 42 0 7 1534 444 19 0 0 chr3 124485557 124485609 -35114174 + (TG)n Simple_repeat Simple_repeat 2 54 0 7 1534 21 36 0 0 chr3 124485668 124485696 -35114087 + AT_rich Low_complexity Low_complexity 1 28 0 7 1534 324 120 0 0 chr3 124486370 124486420 -35113363 + (T)n Simple_repeat Simple_repeat 1 50 0 7 1534 294 125 0 0 chr3 124486711 124486759 -35113024 + (GAAA)n Simple_repeat Simple_repeat 2 49 0 7 1534 244 347 83 64 chr3 124486914 124487071 -35112712 + ORR1D2 LTR MaLR 206 365 -5 8 1534 25 0 0 0 chr3 124488856 124488881 -35110902 + AT_rich Low_complexity Low_complexity 1 25 0 8 1534 874 222 113 5 chr3 124490043 124490238 -35109545 + URR1A DNA MER1_type 2 217 -9 8 1534 649 28 54 27 chr3 124490239 124490350 -35109433 + L1Md_F3 LINE L1 6470 6583 -1 8 1534 22 0 0 0 chr3 124490683 124490705 -35109078 + AT_rich Low_complexity Low_complexity 1 22 0 8 1534 422 177 39 200 chr3 124491106 124491261 -35108522 + RLTR23 LTR ERV1 6 135 -295 8 1534 741 278 73 45 chr3 124491292 124491605 -35108178 + RLTR23 LTR ERV1 109 430 0 8 1534 474 18 0 0 chr3 124492559 124492614 -35107169 + (CA)n Simple_repeat Simple_repeat 2 56 0 8 1534 982 73 0 68 chr3 124493155 124493302 -35106481 + B1_Mus2 SINE Alu 2 138 -9 8 1534 180 0 0 0 chr3 124493321 124493341 -35106442 + (GA)n Simple_repeat Simple_repeat 2 21 0 8 1534 359 276 84 107 chr3 124493413 124493628 -35106155 + L1MD LINE L1 4067 4276 -1870 8 1534 185 198 33 11 chr3 124493714 124493806 -35105977 + (TA)n Simple_repeat Simple_repeat 1 94 0 8 1534 273 111 31 31 chr3 124493816 124493881 -35105902 + (TAGA)n Simple_repeat Simple_repeat 1 65 0 8 1534 5023 79 23 4 chr3 124494271 124494967 -35104816 - Lx3_Mus LINE L1 -2 7007 6299 8 1534 1206 118 5 0 chr3 124494970 124495156 -35104627 + Lx3_Mus LINE L1 6077 6263 -746 8 1534 282 291 214 36 chr3 124495754 124496035 -35103748 - Lx8 LINE L1 -33 7440 7110 8 1534 501 332 33 49 chr3 124496038 124496342 -35103441 - Lx8 LINE L1 -469 7004 6704 8 1534 299 78 0 19 chr3 124496345 124496397 -35103386 + (TTTG)n Simple_repeat Simple_repeat 2 52 0 8 1534 312 363 6 39 chr3 124496411 124496566 -35103217 - Lx8 LINE L1 -784 6689 6536 8 1534 556 321 60 9 chr3 124496606 124496823 -35102960 - Lx8 LINE L1 -1027 6446 6219 8 1534 27 62 0 0 chr3 124497043 124497091 -35102692 + AT_rich Low_complexity Low_complexity 1 48 0 8 1534 36 23 0 0 chr3 124497395 124497438 -35102345 + AT_rich Low_complexity Low_complexity 1 43 0 8 1534 2969 151 85 19 chr3 124497439 124498014 -35101769 - Lx3B LINE L1 -3 6970 6358 8 1534 735 221 7 0 chr3 124498012 124498152 -35101631 + Lx3B LINE L1 6219 6359 -614 8 1534 216 340 48 19 chr3 124498232 124498337 -35101446 + PB1D10 SINE Alu 1 108 -9 8 1534 394 296 45 45 chr3 124499289 124499487 -35100296 + L1M4c LINE L1 55 252 -6132 8 1534 1881 251 24 13 chr3 124500000 124500464 -35099319 + Lx9 LINE L1 6935 7403 -241 1 1534 392 243 96 65 chr3 124500939 124501144 -35098639 + L1_Mur2 LINE L1 5375 5572 -728 2 1534 414 0 0 0 chr3 124501173 124501219 -35098564 + (TA)n Simple_repeat Simple_repeat 2 47 0 3 1534 25 31 0 0 chr3 124501969 124502001 -35097782 + AT_rich Low_complexity Low_complexity 1 32 0 4 1534 295 307 116 41 chr3 124502005 124502151 -35097632 + RSINE1 SINE B4 4 160 -5 5 1534 1434 228 57 20 chr3 124502151 124502505 -35097278 + ORR1D1 LTR MaLR 3 369 -5 6 1534 198 0 0 0 chr3 124502506 124502528 -35097255 + (CA)n Simple_repeat Simple_repeat 1 22 0 7 1534 336 48 0 0 chr3 124502528 124502569 -35097214 + (GA)n Simple_repeat Simple_repeat 2 43 0 8 1534 243 45 0 62 chr3 124502640 124502688 -35097095 + (TTTTTG)n Simple_repeat Simple_repeat 3 47 0 9 1534 588 121 0 0 chr3 124503824 124503915 -35095868 + (TA)n Simple_repeat Simple_repeat 2 92 0 1 1534 7103 73 35 3 chr3 124505221 124506257 -35093526 - L1Md_F2 LINE L1 -17 6565 5509 1 1534 2631 79 0 5 chr3 124506232 124506599 -35093184 - L1Md_F2 LINE L1 -1361 4522 4158 1 1534 8050 75 3 16 chr3 124506601 124507728 -35092055 + L1_Mm LINE L1 4430 5570 -554 1 1534 2665 122 0 2 chr3 124508594 124509012 -35090771 + MusHAL1 LINE L1 1507 1923 -789 1 1534 366 288 119 15 chr3 124509163 124509364 -35090419 - MLT-int LTR MaLR -134 1601 1428 1 1534 582 28 0 0 chr3 124509402 124509474 -35090309 + (TA)n Simple_repeat Simple_repeat 2 73 0 1 1534 1145 272 72 18 chr3 124509865 124510198 -35089585 - ORR1D2 LTR MaLR -19 351 1 1 1534 1774 306 63 11 chr3 124510198 124510757 -35089026 - ORR1D2-int LTR MaLR 0 1370 783 1 1534 623 71 0 10 chr3 124511034 124511133 -35088650 + (TTTC)n Simple_repeat Simple_repeat 1 98 0 1 1534 279 326 21 11 chr3 124512180 124512273 -35087510 - RSINE1 SINE B4 -67 98 5 1 1534 315 0 0 0 chr3 124512381 124512416 -35087367 + (TG)n Simple_repeat Simple_repeat 2 36 0 1 1534 629 269 157 26 chr3 124512801 124513030 -35086753 + ORR1D1 LTR MaLR 3 261 -113 2 1534 309 368 42 17 chr3 124513350 124513469 -35086314 - RSINE1 SINE B4 -22 143 22 2 1534 399 21 0 0 chr3 124513480 124513528 -35086255 + (TG)n Simple_repeat Simple_repeat 1 48 0 2 1534 603 121 0 0 chr3 124513895 124513994 -35085789 + (TTTC)n Simple_repeat Simple_repeat 4 102 0 2 1534 312 27 0 0 chr3 124514001 124514038 -35085745 + (TCTG)n Simple_repeat Simple_repeat 2 38 0 2 1534 250 190 12 37 chr3 124515068 124515150 -35084633 + T-rich Low_complexity Low_complexity 3 82 0 2 1534 318 274 9 62 chr3 124515152 124515265 -35084518 - PB1D9 SINE Alu -1 119 13 2 1534 21 0 0 0 chr3 124515396 124515417 -35084366 + AT_rich Low_complexity Low_complexity 1 21 0 2 1534 312 125 0 0 chr3 124515921 124515985 -35083798 + (A)n Simple_repeat Simple_repeat 1 64 0 2 1534 22 0 0 0 chr3 124516191 124516213 -35083570 + AT_rich Low_complexity Low_complexity 1 22 0 2 1534 1076 89 0 7 chr3 124516220 124516367 -35083416 - B1_Mus1 SINE Alu -2 146 1 3 1534 536 0 16 0 chr3 124516514 124516578 -35083205 + (TC)n Simple_repeat Simple_repeat 2 66 0 3 1534 330 26 0 0 chr3 124516578 124516616 -35083167 + (TG)n Simple_repeat Simple_repeat 2 40 0 3 1534 328 320 39 26 chr3 124516620 124516774 -35083009 - RSINE1 SINE B4 -6 159 4 3 1534 296 285 49 78 chr3 124516774 124516946 -35082837 + B3A SINE B2 46 214 -2 3 191 1415 255 54 39 chr3 124518024 124519062 -35080721 + L1_Rod LINE L1 839 1871 -4009 3 1535 369 0 0 0 chr3 124519078 124519119 -35080664 + (TG)n Simple_repeat Simple_repeat 2 42 0 3 1535 473 273 121 30 chr3 124519134 124519542 -35080241 + L1_Rod LINE L1 4510 4915 -932 3 1535 1330 240 47 32 chr3 124519663 124520068 -35079715 + L1_Rod LINE L1 5401 5811 -36 3 1535 490 167 34 42 chr3 124520068 124520187 -35079596 + Lx3B LINE L1 6854 6971 -2 3 1535 565 307 113 16 chr3 124520248 124520629 -35079154 + L1M2 LINE L1 3740 4157 -1986 3 1535 219 114 0 0 chr3 124520738 124520773 -35079010 + (A)n Simple_repeat Simple_repeat 1 35 0 3 1535 380 352 22 25 chr3 124521289 124521563 -35078220 - L1MC LINE L1 -2016 5769 5497 4 1535 4636 182 68 22 chr3 124521593 124522257 -35077526 - L1_Mur3 LINE L1 -1337 4543 3850 4 1535 207 0 0 0 chr3 124522257 124522280 -35077503 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 4 1535 4636 182 68 22 chr3 124522280 124522672 -35077111 - L1_Mur3 LINE L1 -2031 3849 3439 4 1535 1529 237 26 12 chr3 124522676 124523099 -35076684 - L1_Mur3 LINE L1 -2953 2927 2499 4 1535 1473 304 57 35 chr3 124524426 124525025 -35074758 + Lx9 LINE L1 6364 6975 -669 4 1535 3165 258 60 9 chr3 124525046 124525856 -35073927 - Lx5 LINE L1 -188 6862 6011 4 1535 598 339 66 10 chr3 124525928 124526232 -35073551 + Lx8 LINE L1 6564 6884 -589 4 1535 45 79 0 0 chr3 124526711 124526812 -35072971 + AT_rich Low_complexity Low_complexity 1 101 0 4 1535 579 237 109 50 chr3 124526915 124527104 -35072679 - B3A SINE B2 -4 212 4 4 1535 1019 69 0 0 chr3 124527126 124527257 -35072526 + B1_Mus2 SINE Alu 17 147 0 4 1535 255 270 48 0 chr3 124527726 124527789 -35071994 - PB1D7 SINE Alu -22 98 33 4 1535 21 0 0 0 chr3 124527988 124528009 -35071774 + AT_rich Low_complexity Low_complexity 1 21 0 5 1535 882 335 86 25 chr3 124528009 124528581 -35071202 - Lx8 LINE L1 -5 7468 6862 5 1535 1184 54 0 26 chr3 124528813 124528965 -35070818 + B1_Mus1 SINE Alu 1 148 0 5 1535 247 18 52 52 chr3 124528965 124529023 -35070760 + (CAAAA)n Simple_repeat Simple_repeat 1 58 0 5 1535 2263 59 20 0 chr3 124529686 124529991 -35069792 - L1Md_F3 LINE L1 -14 6570 6260 5 1535 1465 18 0 0 chr3 124529994 124530160 -35069623 - L1Md_F3 LINE L1 -429 6155 5990 5 1535 9851 63 5 2 chr3 124530156 124531423 -35068360 - L1_Mm LINE L1 -57 5826 4556 5 1535 2904 84 80 22 chr3 124531423 124531872 -35067911 + IAPLTR2_Mm LTR ERVK 1 475 0 5 1535 3531 92 13 25 chr3 124531874 124532676 -35067107 + IAPEz-int LTR ERVK 3 662 -5819 5 1535 939 59 0 0 chr3 124532676 124532795 -35066988 + IAPEz-int LTR ERVK 1359 1477 -5004 5 1535 1837 100 12 0 chr3 124532790 124533041 -35066742 + IAPEz-int LTR ERVK 2244 2497 -5183 5 1535 14175 59 10 3 chr3 124533059 124534849 -35064934 + IAPEz-int LTR ERVK 4678 6479 -2 5 1535 2963 84 82 5 chr3 124534851 124535292 -35064491 + IAPLTR2_Mm LTR ERVK 1 475 0 5 1535 4451 57 0 0 chr3 124535292 124535868 -35063915 - L1_Mm LINE L1 -2057 3826 3251 5 1535 35821 65 2 8 chr3 124535876 124541869 -35057914 - L1Md_F3 LINE L1 -14 6570 447 5 1535 21 36 0 0 chr3 124543588 124543616 -35056167 + AT_rich Low_complexity Low_complexity 1 28 0 6 1535 1878 191 29 8 chr3 124543755 124544141 -35055642 + ORR1B1 LTR MaLR 1 394 0 6 1535 5432 153 16 5 chr3 124544326 124545219 -35054564 - Lx4A LINE L1 -1 7057 6155 6 1535 308 77 62 0 chr3 124545622 124545687 -35054096 + (TA)n Simple_repeat Simple_repeat 1 69 0 6 1535 221 254 152 0 chr3 124545896 124545955 -35053828 + RSINE1 SINE B4 34 101 -64 6 1535 550 292 115 48 chr3 124546659 124546720 -35053063 - Lx6 LINE L1 -5 7455 7371 6 1535 2063 68 68 0 chr3 124546720 124547016 -35052767 - L1Md_T LINE L1 0 6582 6267 6 1535 877 249 62 112 chr3 124547016 124547496 -35052287 - Lx7 LINE L1 -77 7619 7164 6 1535 493 211 25 34 chr3 124547490 124547608 -35052175 - Lx7 LINE L1 -746 6950 6834 6 1535 2546 289 76 21 chr3 124548261 124549263 -35050520 - Lx7 LINE L1 -390 7306 6250 6 1535 349 234 36 11 chr3 124549513 124549617 -35050166 - MTE2a LTR MaLR -15 404 311 6 1535 834 288 103 20 chr3 124550243 124550594 -35049189 - Lx8 LINE L1 -1 7472 7093 7 1535 596 284 12 135 chr3 124551467 124551719 -35048064 + 7SK RNA RNA 14 234 -97 7 1535 1306 52 0 0 chr3 124551760 124551914 -35047869 - L1Md_F2 LINE L1 -209 6373 6220 7 1535 1629 52 5 0 chr3 124551915 124552125 -35047658 + L1Md_F2 LINE L1 6370 6580 -2 7 1535 26 30 0 0 chr3 124552464 124552497 -35047286 + AT_rich Low_complexity Low_complexity 1 33 0 7 1535 216 0 0 0 chr3 124552872 124552896 -35046887 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 7 1535 545 134 24 0 chr3 124552906 124552988 -35046795 + Lx2B LINE L1 6522 6605 -395 7 1535 1769 180 18 12 chr3 124553002 124553333 -35046450 - MurERV4_19-int LTR ERVK -5447 333 1 7 1535 2762 189 91 122 chr3 124553333 124553360 -35046423 - RMER19A LTR ERVK 0 737 711 7 1535 5146 92 10 6 chr3 124553360 124554081 -35045702 - L1_Mus3 LINE L1 -5 6633 5910 7 1535 2762 189 91 122 chr3 124554081 124554486 -35045297 - RMER19A LTR ERVK -27 710 305 7 1535 5107 77 13 3 chr3 124554486 124555186 -35044597 + L1_Mus2 LINE L1 5860 6566 0 7 1535 2762 189 91 122 chr3 124555186 124555511 -35044272 - RMER19A LTR ERVK -433 304 5 7 1535 1166 68 0 7 chr3 124555762 124555911 -35043872 + B1_Mus1 SINE Alu 1 148 0 7 1535 184 68 0 102 chr3 124555912 124555961 -35043822 + A-rich Low_complexity Low_complexity 3 46 0 8 1535 23 54 0 0 chr3 124557699 124557736 -35042047 + AT_rich Low_complexity Low_complexity 1 37 0 8 1535 22 56 0 0 chr3 124558864 124558900 -35040883 + AT_rich Low_complexity Low_complexity 1 36 0 8 1535 686 282 159 29 chr3 124561424 124561738 -35038045 + Lx9 LINE L1 6518 6872 -772 8 1535 249 247 24 0 chr3 124561743 124561828 -35037955 - L1MD LINE L1 -1271 4875 4789 8 1535 251 279 89 0 chr3 124561939 124562018 -35037765 - L1MCa LINE L1 -1507 4814 4729 8 1535 297 0 0 0 chr3 124562289 124562322 -35037461 + (TTTA)n Simple_repeat Simple_repeat 4 36 0 8 1535 257 105 0 0 chr3 124562324 124562362 -35037421 - B1_Mus2 SINE Alu -6 141 104 8 1535 387 60 0 0 chr3 124562371 124562421 -35037362 + (TTTA)n Simple_repeat Simple_repeat 4 53 0 8 1535 1077 92 0 0 chr3 124562423 124562564 -35037219 - B1_Mus1 SINE Alu -6 142 2 8 1535 309 297 99 47 chr3 124562680 124563146 -35036637 - L1MCa LINE L1 -2169 4152 3663 8 1535 252 0 0 0 chr3 124563146 124563174 -35036609 + (TC)n Simple_repeat Simple_repeat 2 29 0 9 1535 415 182 0 16 chr3 124563174 124563297 -35036486 + (TA)n Simple_repeat Simple_repeat 1 121 0 9 1535 1512 318 72 16 chr3 124563349 124564407 -35035376 - L1MCa LINE L1 -2694 3627 2511 8 1535 235 309 58 14 chr3 124564464 124564533 -35035250 + MER58B DNA MER1_type 251 322 -19 9 1535 337 219 34 0 chr3 124564794 124564913 -35034870 + (TCTA)n Simple_repeat Simple_repeat 4 126 0 9 1535 449 346 60 47 chr3 124565006 124565627 -35034156 - L1MC1 LINE L1 -337 5996 5368 9 1535 250 365 51 15 chr3 124565694 124565889 -35033894 - L1MCa LINE L1 -5838 670 469 8 1535 384 320 107 22 chr3 124566861 124567085 -35032698 + L1MCa LINE L1 1 243 -6265 9 1535 239 331 32 39 chr3 124567289 124567443 -35032340 + L1MCa LINE L1 591 743 -5765 9 1535 33 25 0 0 chr3 124567868 124567908 -35031875 + AT_rich Low_complexity Low_complexity 1 40 0 9 1535 611 360 71 9 chr3 124568134 124568344 -35031439 - B4A SINE B4 -4 288 66 9 1535 1273 226 0 43 chr3 124568651 124568910 -35030873 + MTC LTR MaLR 1 247 -174 9 1535 2525 193 88 18 chr3 124568910 124569465 -35030318 - RLTR26 LTR ERVK 0 642 49 9 1535 429 292 85 43 chr3 124570676 124571137 -35028646 + L1MCa LINE L1 5000 5479 -842 9 1535 6641 171 41 52 chr3 124571498 124572163 -35027620 - Lx3C LINE L1 -2 6974 6273 1 1535 315 49 0 0 chr3 124572163 124572204 -35027579 + (TC)n Simple_repeat Simple_repeat 2 42 0 1 1535 6641 171 41 52 chr3 124572204 124572585 -35027198 - Lx3C LINE L1 -704 6272 5939 1 1535 1051 89 18 6 chr3 124572585 124572754 -35027029 - L1_Mus4 LINE L1 -6 6630 6460 1 1535 6641 160 47 9 chr3 124572754 124573235 -35026548 - Lx3C LINE L1 -1038 5938 5449 1 1535 39337 28 1 6 chr3 124573240 124579294 -35020489 - L1Md_T LINE L1 -2 6580 569 1 1535 4113 152 15 16 chr3 124579294 124580024 -35019759 - Lx3C LINE L1 -421 5465 4737 1 1535 525 289 11 22 chr3 124580334 124580518 -35019265 + B3A SINE B2 2 183 -15 1 1535 903 120 8 0 chr3 124580528 124580661 -35019122 - B1_Mus1 SINE Alu -13 135 2 1 1535 229 357 7 14 chr3 124581154 124581296 -35018487 + CT-rich Low_complexity Low_complexity 1 141 0 1 1535 213 151 0 0 chr3 124582302 124582355 -35017428 + A-rich Low_complexity Low_complexity 1 53 0 1 1535 4897 102 17 0 chr3 124582473 124583186 -35016597 - L1_Mus3 LINE L1 -3 6635 5911 1 1535 17337 153 15 21 chr3 124583187 124586899 -35012884 - L1VL4 LINE L1 -1541 4342 648 1 1535 21 0 0 0 chr3 124587233 124587254 -35012529 + AT_rich Low_complexity Low_complexity 1 21 0 1 1535 180 258 0 0 chr3 124587855 124587886 -35011897 - L2 LINE L2 -2058 1361 1331 1 1535 22 0 0 0 chr3 124588294 124588316 -35011467 + AT_rich Low_complexity Low_complexity 1 22 0 1 1535 1746 182 47 72 chr3 124588545 124588989 -35010794 + RMER17B LTR ERVK 2 434 -524 1 1535 2129 113 16 3 chr3 124588977 124589288 -35010495 - IAPEY2_LTR LTR ERVK -11 346 32 1 1535 5440 94 6 10 chr3 124589298 124590080 -35009703 - IAPEy-int LTR ERVK 0 7513 6735 1 1535 3425 84 2 2 chr3 124590070 124590524 -35009259 - IAPEy-int LTR ERVK -1367 6214 5761 1 1535 3005 111 20 16 chr3 124590515 124590953 -35008830 - IAPEy-int LTR ERVK -1939 5642 5203 1 1535 544 91 47 66 chr3 124591208 124591314 -35008469 - IAPEy-int LTR ERVK -2911 4670 4567 1 1535 424 86 0 0 chr3 124591311 124591369 -35008414 - IAPEy-int LTR ERVK -3782 3624 3567 1 1535 659 202 0 0 chr3 124591395 124591514 -35008269 - IAPEy-int LTR ERVK -4653 2753 2635 1 1535 421 223 98 0 chr3 124591630 124591742 -35008041 - RMER16-int LTR ERVK -5077 1060 938 1 1535 1602 186 107 48 chr3 124591747 124592228 -35007555 - RMER16-int LTR ERVK -4750 656 251 1 1535 294 165 0 108 chr3 124592340 124592442 -35007341 - IAPEy-int LTR ERVK -6629 952 862 1 1535 2743 177 82 81 chr3 124592464 124593228 -35006555 - IAPEy-int LTR ERVK -6748 765 1 1 1535 2459 93 26 3 chr3 124593233 124593579 -35006204 - IAPEY2_LTR LTR ERVK -3 354 1 1 1535 3106 167 81 28 chr3 124593579 124594233 -35005550 + RMER17B LTR ERVK 270 958 0 1 1535 21 57 0 0 chr3 124596014 124596049 -35003734 + AT_rich Low_complexity Low_complexity 1 35 0 1 1535 570 361 63 22 chr3 124598126 124598491 -35001292 - Lx9 LINE L1 -178 7466 7087 1 1535 1331 349 67 44 chr3 124598488 124599514 -35000269 + Lx8 LINE L1 6394 7443 -30 1 1535 222 37 0 0 chr3 124599814 124599841 -34999942 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 1 1535 4598 221 68 24 chr3 124599865 124600906 -34998877 - Lx5 LINE L1 -11 7039 5953 1 1535 309 352 22 22 chr3 124601388 124601568 -34998215 + Lx9 LINE L1 7158 7337 -307 1 1535 255 292 0 0 chr3 124601669 124601758 -34998025 + (TA)n Simple_repeat Simple_repeat 2 90 0 1 1535 480 35 0 0 chr3 124601809 124601867 -34997916 + (TA)n Simple_repeat Simple_repeat 2 59 0 1 1535 205 167 0 0 chr3 124602160 124602196 -34997587 + (TG)n Simple_repeat Simple_repeat 2 37 0 1 1535 237 180 20 0 chr3 124602432 124602482 -34997301 + (CATATA)n Simple_repeat Simple_repeat 3 53 0 1 1535 189 0 0 0 chr3 124603358 124603379 -34996404 + (TCTG)n Simple_repeat Simple_repeat 2 22 0 1 1535 21 0 0 0 chr3 124604192 124604213 -34995570 + AT_rich Low_complexity Low_complexity 1 21 0 1 1535 837 115 38 19 chr3 124604322 124604482 -34995301 - MusHAL1 LINE L1 -2082 630 468 1 1535 378 0 0 0 chr3 124604927 124604969 -34994814 + (CA)n Simple_repeat Simple_repeat 2 43 0 1 1535 387 0 0 0 chr3 124604993 124605036 -34994747 + (GA)n Simple_repeat Simple_repeat 1 43 0 1 1535 348 24 0 0 chr3 124605036 124605076 -34994707 + (TG)n Simple_repeat Simple_repeat 1 41 0 1 1535 26 64 0 0 chr3 124605688 124605735 -34994048 + AT_rich Low_complexity Low_complexity 1 47 0 1 1535 7376 73 7 3 chr3 124605800 124606921 -34992862 + L1_Mus2 LINE L1 5440 6565 -1 1 1535 25 31 0 0 chr3 124607038 124607070 -34992713 + AT_rich Low_complexity Low_complexity 1 32 0 1 1535 477 336 0 0 chr3 124607095 124607214 -34992569 - B3A SINE B2 -42 156 38 1 1535 461 188 0 12 chr3 124607214 124607300 -34992483 + MT2A LTR ERVL 1 85 -448 1 1535 255 21 0 78 chr3 124607622 124607673 -34992110 + (TTTTA)n Simple_repeat Simple_repeat 2 48 0 1 1535 329 303 26 68 chr3 124607939 124608130 -34991653 - L1MA7 LINE L1 -1 6290 6108 1 1535 24 32 0 0 chr3 124608448 124608479 -34991304 + AT_rich Low_complexity Low_complexity 1 31 0 1 1535 2481 227 28 47 chr3 124609138 124609388 -34990395 + Lx6 LINE L1 5560 5824 -1226 1 1535 414 0 0 0 chr3 124609388 124609434 -34990349 + (TG)n Simple_repeat Simple_repeat 1 46 0 1 1535 2481 272 122 108 chr3 124609434 124609639 -34990144 + Lx6 LINE L1 5825 6115 -935 1 1535 1089 50 0 0 chr3 124609639 124609779 -34990004 + (GA)n Simple_repeat Simple_repeat 2 141 0 1 1535 2591 263 82 34 chr3 124609779 124610703 -34989080 + Lx6 LINE L1 6116 7343 -117 1 1535 21 104 0 0 chr3 124610959 124611036 -34988747 + AT_rich Low_complexity Low_complexity 1 77 0 1 1535 23 0 0 0 chr3 124611146 124611169 -34988614 + AT_rich Low_complexity Low_complexity 1 23 0 1 1535 940 292 147 8 chr3 124612724 124613228 -34986555 - Lx8 LINE L1 0 7473 6900 1 1535 3562 278 59 17 chr3 124613274 124614565 -34985218 - RMER1A Other Other 0 1030 4 1 1535 432 352 22 16 chr3 124615266 124615448 -34984335 + B3 SINE B2 28 210 -6 1 1535 24 85 0 0 chr3 124615672 124615731 -34984052 + AT_rich Low_complexity Low_complexity 1 59 0 1 1535 297 0 0 0 chr3 124616032 124616065 -34983718 + (CA)n Simple_repeat Simple_repeat 2 34 0 1 1535 738 106 0 0 chr3 124616065 124616196 -34983587 + (GA)n Simple_repeat Simple_repeat 2 133 0 1 1535 24 53 0 0 chr3 124616819 124616857 -34982926 + AT_rich Low_complexity Low_complexity 1 38 0 1 1535 423 0 0 0 chr3 124617723 124617770 -34982013 + (TCTA)n Simple_repeat Simple_repeat 3 49 0 1 1535 213 204 17 69 chr3 124618699 124618757 -34981026 - B1_Mur3 SINE Alu -11 138 84 1 1535 609 228 29 58 chr3 124619506 124619678 -34980105 + Lx9 LINE L1 6998 7164 -480 1 1535 332 279 25 0 chr3 124619680 124619759 -34980024 + Lx7 LINE L1 5615 5695 -2001 1 1535 2174 92 12 6 chr3 124620290 124620618 -34979165 + L1_Mus3 LINE L1 6302 6631 -7 1 1535 570 344 0 13 chr3 124620630 124620783 -34979000 + RSINE1 SINE B4 6 156 -9 1 1535 201 185 0 18 chr3 124621338 124621393 -34978390 + (TTG)n Simple_repeat Simple_repeat 2 55 0 1 1535 414 39 0 0 chr3 124621486 124621538 -34978245 + (CA)n Simple_repeat Simple_repeat 1 52 0 1 1535 333 372 8 8 chr3 124622169 124622291 -34977492 + B4A SINE B4 165 286 -6 1 1535 21 36 0 0 chr3 124622365 124622393 -34977390 + AT_rich Low_complexity Low_complexity 1 28 0 1 1535 369 0 0 0 chr3 124622817 124622858 -34976925 + (TG)n Simple_repeat Simple_repeat 1 41 0 1 1535 285 29 0 0 chr3 124624793 124624827 -34974956 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 1 1535 1137 76 0 0 chr3 124624911 124625068 -34974715 + (TCTCCC)n Simple_repeat Simple_repeat 1 157 0 1 1535 1986 110 41 0 chr3 124625341 124625658 -34974125 - L1_Mus4 LINE L1 -2 6634 6305 1 1535 1379 119 0 5 chr3 124625658 124625861 -34973922 + L1_Mus4 LINE L1 6094 6295 -341 1 1535 666 332 114 3 chr3 124626293 124626625 -34973158 - MTEb LTR MaLR -8 371 3 1 1535 21 57 0 0 chr3 124626742 124626777 -34973006 + AT_rich Low_complexity Low_complexity 1 35 0 1 1535 21 89 0 0 chr3 124628124 124628180 -34971603 + AT_rich Low_complexity Low_complexity 1 56 0 1 1535 598 306 125 7 chr3 124628262 124628542 -34971241 - Lx9 LINE L1 -973 6671 6359 1 1535 363 44 0 0 chr3 124628555 124628600 -34971183 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 1535 640 271 208 12 chr3 124628683 124628933 -34970850 + Lx9 LINE L1 7099 7397 -247 1 1535 22 35 0 0 chr3 124629121 124629150 -34970633 + AT_rich Low_complexity Low_complexity 1 29 0 1 1535 1748 207 52 0 chr3 124630437 124630800 -34968983 + ORR1C2 LTR MaLR 1 382 -2 1 1535 246 105 0 0 chr3 124631003 124631041 -34968742 + (TATG)n Simple_repeat Simple_repeat 3 40 0 1 1535 25 31 0 0 chr3 124631041 124631073 -34968710 + AT_rich Low_complexity Low_complexity 1 32 0 1 1535 398 189 237 26 chr3 124631744 124631858 -34967925 + URR1A DNA MER1_type 2 139 -87 1 1535 25 0 0 0 chr3 124632480 124632505 -34967278 + AT_rich Low_complexity Low_complexity 1 25 0 1 1535 207 132 74 19 chr3 124634872 124634960 -34964823 + (CAGA)n Simple_repeat Simple_repeat 1 92 0 1 1535 663 240 20 7 chr3 124635131 124635282 -34964501 - RMER5 LTR ERV1 -31 503 351 1 1535 401 167 0 14 chr3 124635284 124635357 -34964426 - RMER17D2 LTR ERVK -737 72 1 1 1535 811 230 68 42 chr3 124635370 124635606 -34964177 - RMER5 LTR ERV1 -222 312 71 1 1535 1799 192 7 117 chr3 124637499 124637942 -34961841 + ORR1B1 LTR MaLR 1 394 0 1 1535 300 177 52 17 chr3 124638013 124638128 -34961655 + (TA)n Simple_repeat Simple_repeat 2 120 0 1 1535 24 77 0 0 chr3 124638400 124638452 -34961331 + AT_rich Low_complexity Low_complexity 1 52 0 1 1535 1124 239 57 25 chr3 124638616 124638930 -34960853 + Lx9 LINE L1 7135 7458 -186 1 1535 288 77 0 0 chr3 124638930 124638969 -34960814 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 1535 285 333 32 43 chr3 124639104 124639128 -34960655 - B2_Mm2 SINE B2 -9 186 165 1 1535 186 43 0 0 chr3 124639128 124639151 -34960632 + (TG)n Simple_repeat Simple_repeat 1 23 0 1 1535 358 333 32 43 chr3 124639151 124639314 -34960469 - B3A SINE B2 -28 170 1 1 1535 273 364 41 16 chr3 124639385 124639508 -34960275 + B1_Mus2 SINE Alu 2 127 -20 1 1535 597 299 68 80 chr3 124639565 124639816 -34959967 - ORR1D2 LTR MaLR -117 253 6 1 1535 257 280 9 0 chr3 124639857 124639964 -34959819 + (CA)n Simple_repeat Simple_repeat 2 109 0 1 1535 256 328 0 49 chr3 124640095 124640217 -34959566 + MLT1C LTR MaLR 352 467 0 1 1535 389 314 131 29 chr3 124640506 124640887 -34958896 + L1MC3 LINE L1 7047 7466 -319 1 1535 349 305 42 78 chr3 124642538 124642680 -34957103 + B4A SINE B4 134 270 -22 1 1535 242 125 21 0 chr3 124642708 124642756 -34957027 + (TA)n Simple_repeat Simple_repeat 2 50 0 1 1535 237 319 87 40 chr3 124642839 124642989 -34956794 + RLTR21 LTR ERVK 1085 1241 -331 1 1535 408 40 0 0 chr3 124643178 124643228 -34956555 + (CTA)n Simple_repeat Simple_repeat 1 50 0 1 1535 3791 77 21 2 chr3 124643745 124644265 -34955518 + L1_Mus2 LINE L1 6035 6564 -2 1 1535 28 48 0 0 chr3 124644884 124644926 -34954857 + AT_rich Low_complexity Low_complexity 1 42 0 1 1535 925 143 107 6 chr3 124645158 124645327 -34954456 - Lx3A LINE L1 -288 6693 6508 2 1535 612 139 150 12 chr3 124645324 124645484 -34954299 - Lx3A LINE L1 -810 6163 5982 2 1535 8801 122 1 126 chr3 124646154 124646959 -34952824 + L1_Mus3 LINE L1 4360 4997 -886 2 1535 4562 51 67 2 chr3 124646959 124647568 -34952215 - L1Md_F2 LINE L1 -2 6580 5932 2 1535 4791 31 2 10 chr3 124647567 124648153 -34951630 + L1Md_F3 LINE L1 5990 6570 -14 2 191 8801 108 3 60 chr3 124648153 124649856 -34949927 + L1_Mus3 LINE L1 4998 6635 -3 2 1536 26 0 0 0 chr3 124649878 124649904 -34949879 + AT_rich Low_complexity Low_complexity 1 26 0 2 1536 1591 273 115 65 chr3 124650192 124650803 -34948980 - Lx6 LINE L1 -73 7387 6747 2 1536 227 261 68 116 chr3 124651144 124651291 -34948492 + ORR1B1 LTR MaLR 186 325 -69 2 1536 2400 251 29 14 chr3 124651452 124652013 -34947770 - Lx5 LINE L1 0 7050 6482 2 1536 3984 157 624 26 chr3 124652005 124652159 -34947624 + L1_Mur2 LINE L1 4374 4621 -1256 2 1536 246 32 0 0 chr3 124652159 124652190 -34947593 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 2 1536 3984 190 24 48 chr3 124652190 124652982 -34946801 + L1_Mur2 LINE L1 4622 5392 -485 2 1536 218 195 0 0 chr3 124653005 124653046 -34946737 + T-rich Low_complexity Low_complexity 3 43 0 2 1536 3909 211 36 19 chr3 124653046 124653901 -34945882 - Lx3C LINE L1 0 6976 6107 2 1536 923 234 50 92 chr3 124654411 124654815 -34944968 - L1_Mur3 LINE L1 -3254 2626 2240 2 1536 361 298 99 0 chr3 124654809 124654940 -34944843 + Lx7 LINE L1 7146 7289 -407 2 1536 206 289 0 0 chr3 124657367 124657419 -34942364 + (CA)n Simple_repeat Simple_repeat 1 52 0 2 1536 21 57 0 0 chr3 124657433 124657468 -34942315 + AT_rich Low_complexity Low_complexity 1 35 0 2 1536 21 57 0 0 chr3 124658519 124658554 -34941229 + AT_rich Low_complexity Low_complexity 1 35 0 2 1536 188 173 39 0 chr3 124659339 124659391 -34940392 + (CATG)n Simple_repeat Simple_repeat 3 56 0 2 1536 266 305 144 84 chr3 124659434 124659649 -34940134 + B4A SINE B4 31 258 -34 2 1536 377 135 67 13 chr3 124659675 124659750 -34940033 + B1_Mur4 SINE Alu 72 150 0 2 1536 249 305 0 0 chr3 124659977 124660036 -34939747 + (CA)n Simple_repeat Simple_repeat 2 60 0 2 1536 1521 51 0 5 chr3 124660474 124660672 -34939111 + L1Md_F3 LINE L1 6374 6570 -14 2 1536 333 267 20 0 chr3 124660940 124661041 -34938742 - L1MA6 LINE L1 -344 5956 5854 2 1536 2543 202 58 3 chr3 124661130 124661696 -34938087 + Lx9 LINE L1 6961 7557 -87 2 1536 972 73 80 0 chr3 124662287 124662424 -34937359 - B1_Mus1 SINE Alu 0 148 1 2 1536 22 35 0 0 chr3 124662537 124662566 -34937217 + AT_rich Low_complexity Low_complexity 1 29 0 2 1536 2519 255 77 5 chr3 124662928 124663474 -34936309 - Lx6 LINE L1 -5 7455 6875 2 1536 437 34 0 17 chr3 124663474 124663534 -34936249 + (TG)n Simple_repeat Simple_repeat 2 60 0 2 1536 2519 255 77 5 chr3 124663534 124663653 -34936130 - Lx6 LINE L1 -586 6874 6743 2 1536 774 175 0 0 chr3 124663655 124663832 -34935951 + CT-rich Low_complexity Low_complexity 1 177 0 2 1536 5005 121 14 0 chr3 124663866 124664625 -34935158 + Lx2 LINE L1 6227 6996 -1 2 1536 375 405 69 20 chr3 124665151 124665501 -34934282 - LTR80A LTR ERVL -109 474 108 2 1536 24 53 0 0 chr3 124665593 124665631 -34934152 + AT_rich Low_complexity Low_complexity 1 38 0 2 1536 587 213 129 6 chr3 124665738 124665908 -34933875 + L1_Mur3 LINE L1 4927 5117 -763 2 1536 21 57 0 0 chr3 124666105 124666140 -34933643 + AT_rich Low_complexity Low_complexity 1 35 0 2 1536 347 305 42 0 chr3 124666677 124666795 -34932988 - MTEa LTR MaLR -4 375 253 2 1536 785 248 128 32 chr3 124666797 124667184 -34932599 - RMER20B LTR ERVK -25 602 124 2 1536 295 298 123 68 chr3 124667374 124667536 -34932247 - MTEa LTR MaLR -175 184 14 2 1536 34502 69 3 2 chr3 124668404 124673677 -34926106 + L1Md_F3 LINE L1 345 5586 -297 2 1536 8080 40 2 0 chr3 124673677 124674659 -34925124 + L1Md_F3 LINE L1 5587 6570 -14 2 1536 3849 97 0 0 chr3 124674808 124675335 -34924448 - L1_Mus1 LINE L1 0 6567 6041 2 1536 215 368 0 42 chr3 124675567 124675686 -34924097 - L2 LINE L2 -557 2862 2749 2 1536 453 36 0 0 chr3 124676153 124676208 -34923575 + (TA)n Simple_repeat Simple_repeat 2 56 0 2 1536 189 0 0 0 chr3 124676208 124676228 -34923555 + (TG)n Simple_repeat Simple_repeat 2 22 0 2 1536 24 0 0 0 chr3 124676602 124676626 -34923157 + AT_rich Low_complexity Low_complexity 1 24 0 2 1536 230 318 11 54 chr3 124676674 124676767 -34923016 + PB1D10 SINE Alu 19 107 -10 2 1536 520 253 201 11 chr3 124676990 124677174 -34922609 - RMER19B LTR ERVK 0 902 684 2 1536 1326 206 10 42 chr3 124677430 124677718 -34922065 + RMER19C LTR ERVK 1 279 -332 2 1536 217 118 19 19 chr3 124678354 124678406 -34921377 + T-rich Low_complexity Low_complexity 2 53 0 2 1536 384 152 0 0 chr3 124679127 124679193 -34920590 + (TGG)n Simple_repeat Simple_repeat 3 68 0 2 1536 634 33 44 0 chr3 124681321 124681412 -34918371 + (TAAAA)n Simple_repeat Simple_repeat 1 95 0 2 1536 28 0 0 0 chr3 124682068 124682096 -34917687 + AT_rich Low_complexity Low_complexity 1 28 0 2 1536 405 0 0 0 chr3 124682290 124682335 -34917448 + (TC)n Simple_repeat Simple_repeat 1 45 0 2 1536 25 65 0 0 chr3 124682632 124682678 -34917105 + AT_rich Low_complexity Low_complexity 1 46 0 2 1536 6206 203 36 22 chr3 124682915 124685274 -34914509 + Lx5 LINE L1 4608 7008 -42 2 1536 188 67 33 0 chr3 124685812 124685842 -34913941 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2 1536 1692 229 63 0 chr3 124685874 124686241 -34913542 + MTC LTR MaLR 1 390 -31 2 1536 1166 48 7 0 chr3 124686266 124686411 -34913372 - B1_Mm SINE Alu -1 146 1 2 1536 282 266 0 0 chr3 124687272 124687336 -34912447 - Lx9 LINE L1 -231 7413 7350 2 1536 620 298 65 12 chr3 124687377 124687547 -34912236 - B3A SINE B2 -18 180 2 2 1536 300 324 120 57 chr3 124687675 124687992 -34911791 + MLT1B LTR MaLR 54 390 0 2 1536 34 0 0 0 chr3 124690555 124690589 -34909194 + AT_rich Low_complexity Low_complexity 1 34 0 2 1536 610 300 117 85 chr3 124690753 124691165 -34908618 - Lx9 LINE L1 -213 7431 6999 2 1536 2094 228 70 24 chr3 124691165 124691749 -34908034 - RMER19C LTR ERVK 0 611 1 2 1536 610 300 117 85 chr3 124691749 124691781 -34908002 - Lx9 LINE L1 -646 6998 6973 2 1536 1679 323 55 50 chr3 124691780 124692702 -34907081 + Lx9 LINE L1 5785 6825 -819 2 1536 1192 213 212 87 chr3 124692702 124693174 -34906609 - MT2A LTR ERVL -2 531 1 2 1536 1679 321 54 44 chr3 124693174 124693362 -34906421 + Lx9 LINE L1 6826 7027 -617 2 1536 366 61 0 0 chr3 124693473 124693522 -34906261 + (CA)n Simple_repeat Simple_repeat 2 50 0 2 1536 285 51 0 0 chr3 124693891 124693930 -34905853 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 2 1536 5770 87 1 20 chr3 124694021 124694829 -34904954 - L1Md_F2 LINE L1 -13 6569 5777 2 1536 7981 71 0 13 chr3 124694829 124695891 -34903892 + L1Md_F2 LINE L1 4716 5763 -120 2 1536 36811 25 1 8 chr3 124695924 124701110 -34898673 + L1Md_T LINE L1 443 5586 -297 2 1536 8344 34 2 0 chr3 124701110 124702103 -34897680 + L1Md_T LINE L1 5587 6581 -1 2 1536 28 0 0 0 chr3 124702511 124702539 -34897244 + AT_rich Low_complexity Low_complexity 1 28 0 2 1536 500 135 29 2 chr3 124702608 124702704 -34897079 + B1_Mur4 SINE Alu 45 149 -1 2 1536 229 197 26 0 chr3 124703239 124703315 -34896468 + CT-rich Low_complexity Low_complexity 3 80 0 2 1536 414 0 0 0 chr3 124703329 124703375 -34896408 + (TG)n Simple_repeat Simple_repeat 2 47 0 2 1536 5141 151 9 0 chr3 124703536 124704353 -34895430 - Lx2 LINE L1 0 6997 6174 2 1536 1121 131 47 0 chr3 124704355 124704569 -34895214 + Lx2 LINE L1 5945 6168 -829 2 1536 2326 48 3 3 chr3 124704758 124705050 -34894733 - L1_Mus2 LINE L1 -1 6565 6274 2 1536 22 0 0 0 chr3 124705248 124705270 -34894513 + AT_rich Low_complexity Low_complexity 1 22 0 2 1536 3789 195 104 65 chr3 124705374 124706231 -34893552 - RMER19B LTR ERVK -12 890 1 2 1536 409 333 0 0 chr3 124706231 124706333 -34893450 - RSINE1 SINE B4 -31 134 33 2 1536 1059 101 0 0 chr3 124706546 124706685 -34893098 - B1_Mus1 SINE Alu -9 139 1 2 1536 466 40 26 26 chr3 124706933 124707010 -34892773 + (TCTCTG)n Simple_repeat Simple_repeat 2 78 0 2 1536 360 0 0 0 chr3 124707013 124707053 -34892730 + (TG)n Simple_repeat Simple_repeat 2 41 0 2 1536 296 327 19 19 chr3 124707512 124707618 -34892165 - B4A SINE B4 -10 282 177 2 1536 237 355 38 44 chr3 124708501 124708660 -34891123 - MER5A1 DNA MER1_type -8 158 1 2 1536 423 0 0 0 chr3 124709076 124709123 -34890660 + (TAG)n Simple_repeat Simple_repeat 1 47 0 2 1536 354 45 0 0 chr3 124709853 124709897 -34889886 + (CAAA)n Simple_repeat Simple_repeat 2 45 0 2 1536 189 147 0 0 chr3 124710091 124710125 -34889658 + (T)n Simple_repeat Simple_repeat 1 34 0 2 1536 2385 69 33 123 chr3 124710153 124710456 -34889327 - L1_Mus3 LINE L1 -3 6635 6371 2 1536 374 42 55 14 chr3 124710456 124710529 -34889254 + (TTTG)n Simple_repeat Simple_repeat 1 76 0 2 1536 2385 69 33 123 chr3 124710529 124710654 -34889129 - L1_Mus3 LINE L1 -268 6370 6246 2 1536 1509 237 91 38 chr3 124711467 124711630 -34888153 - RMER1C Other Other -1 1341 1192 2 1536 370 79 32 0 chr3 124711630 124711693 -34888090 + (CAA)n Simple_repeat Simple_repeat 2 66 0 2 1536 1509 237 91 38 chr3 124711693 124711981 -34887802 - RMER1C Other Other -151 1191 866 2 1536 29 47 0 0 chr3 124712090 124712133 -34887650 + AT_rich Low_complexity Low_complexity 1 43 0 2 1536 240 59 0 0 chr3 124712210 124712244 -34887539 + (TG)n Simple_repeat Simple_repeat 2 35 0 2 1536 360 275 62 27 chr3 124712245 124712391 -34887392 - L1MC1 LINE L1 -7 6326 6176 2 1536 943 138 13 13 chr3 124712958 124713112 -34886671 + B2_Mm2 SINE B2 1 154 -41 2 1536 1286 199 29 40 chr3 124713269 124713546 -34886237 + RLTR46 LTR ERVK 42 315 -5 2 1536 622 209 77 0 chr3 124713731 124713927 -34885856 + IAPEY3-int LTR ERVK 535 745 -6935 2 1536 509 192 13 33 chr3 124713938 124714089 -34885694 + GA-rich Low_complexity Low_complexity 2 149 0 2 1536 706 183 12 56 chr3 124714092 124714350 -34885433 + MMERVK10C-int LTR ERVK 74 503 -6039 2 1536 1122 97 6 3 chr3 124714350 124714537 -34885246 + MMERVK10C-int LTR ERVK 5460 5589 -1992 2 1536 3755 58 0 20 chr3 124714550 124715044 -34884739 - L1Md_F2 LINE L1 0 6582 6099 2 1536 917 92 0 0 chr3 124715044 124715164 -34884619 + L1Md_F2 LINE L1 5979 6098 -484 2 1536 875 94 0 0 chr3 124715164 124715281 -34884502 + MMERVK10C-int LTR ERVK 5583 5699 -1882 2 1536 3037 158 5 98 chr3 124715300 124715946 -34883837 + MMERVK10C-int LTR ERVK 6849 7434 -147 2 1536 2604 58 0 0 chr3 124715948 124716260 -34883523 + RLTR10-int LTR ERVK 1486 1797 -190 2 1536 684 123 0 0 chr3 124716285 124716391 -34883392 + MMERVK10C-int LTR ERVK 7474 7579 -2 2 1536 1285 178 33 43 chr3 124716402 124716678 -34883105 + RLTR46 LTR ERVK 43 315 -5 2 1536 612 327 12 18 chr3 124717017 124717185 -34882598 + B3A SINE B2 2 168 -30 2 1536 1370 204 43 227 chr3 124717265 124718013 -34881770 - RMER19C LTR ERVK -1 610 1 2 1536 365 0 48 32 chr3 124718108 124718170 -34881613 + (TTTG)n Simple_repeat Simple_repeat 2 64 0 3 1536 1030 84 21 0 chr3 124718170 124718313 -34881470 - B1_Mus1 SINE Alu -2 146 1 3 1536 270 345 39 45 chr3 124718325 124718480 -34881303 - B3 SINE B2 0 216 63 3 1536 215 228 11 0 chr3 124719473 124719565 -34880218 + CT-rich Low_complexity Low_complexity 5 97 0 3 1536 21 36 0 0 chr3 124721411 124721439 -34878344 + AT_rich Low_complexity Low_complexity 1 28 0 3 1536 2918 272 64 51 chr3 124722041 124724042 -34875741 - Lx9 LINE L1 -297 7347 5183 3 1536 6633 143 35 4 chr3 124724280 124726181 -34873602 + Lx LINE L1 4693 6654 0 3 1536 542 326 67 46 chr3 124726263 124726591 -34873192 - Lx9 LINE L1 -314 7330 6996 3 1536 467 303 34 11 chr3 124726604 124726781 -34873002 + Lx9 LINE L1 6760 6940 -704 3 1536 437 260 28 28 chr3 124727062 124727169 -34872614 - B1F SINE Alu -10 107 1 3 1536 273 307 0 26 chr3 124727110 124727187 -34872596 - B4 SINE B4 -148 144 70 3 1536 28 0 0 0 chr3 124727252 124727280 -34872503 + AT_rich Low_complexity Low_complexity 1 28 0 3 1536 1259 147 68 5 chr3 124727375 124727594 -34872189 - Lx2 LINE L1 -575 6422 6190 3 1536 3056 138 97 0 chr3 124727594 124728108 -34871675 + Lx2 LINE L1 6434 6997 0 3 1536 650 204 7 21 chr3 124728740 124728880 -34870903 + ORR1D1 LTR MaLR 1 138 -236 3 1536 4004 203 31 52 chr3 124728883 124730058 -34869725 + L1_Mur3 LINE L1 1077 2231 -3649 3 1536 878 252 125 57 chr3 124730085 124730526 -34869257 + RLTR12B LTR ERVK 11 481 -47 3 1536 3424 210 38 37 chr3 124730581 124731298 -34868485 + L1_Mur3 LINE L1 2296 2997 -2883 3 1536 492 18 0 0 chr3 124731298 124731355 -34868428 + (TAGA)n Simple_repeat Simple_repeat 4 60 0 3 1536 3424 210 38 37 chr3 124731355 124731636 -34868147 + L1_Mur3 LINE L1 2998 3295 -2585 3 1536 790 212 32 62 chr3 124731746 124732079 -34867704 - RMER2 LTR ERV1 -142 425 4 3 1536 1600 172 87 17 chr3 124732085 124732488 -34867295 + L1_Mur3 LINE L1 3303 3733 -2147 3 1536 859 148 0 0 chr3 124732486 124732628 -34867155 + Lx3C LINE L1 4861 5002 -884 3 1536 36433 31 8 8 chr3 124732629 124737776 -34862007 + L1Md_T LINE L1 440 5586 -297 3 1536 8344 37 1 0 chr3 124737777 124738769 -34861014 + L1Md_T LINE L1 5588 6580 -2 3 1536 6856 159 39 60 chr3 124738876 124739890 -34859893 + Lx3C LINE L1 5006 5995 -981 3 1536 1681 59 32 0 chr3 124739890 124740109 -34859674 + L1Md_F2 LINE L1 6356 6581 -1 3 1536 6856 191 20 21 chr3 124740109 124740888 -34858895 + Lx3C LINE L1 5996 6757 -219 3 1536 234 0 0 0 chr3 124740888 124740914 -34858869 + (TA)n Simple_repeat Simple_repeat 1 26 0 3 1536 6856 191 20 21 chr3 124740914 124741115 -34858668 + Lx3C LINE L1 6758 6974 -2 3 1536 3718 186 19 16 chr3 124741111 124741912 -34857871 + L1_Mur3 LINE L1 3741 4543 -1337 3 1536 793 229 41 15 chr3 124742258 124742453 -34857330 + Lx6 LINE L1 6597 6796 -664 3 1536 1379 271 25 59 chr3 124742457 124742864 -34856919 + Lx6 LINE L1 6913 7305 -155 3 1536 21 36 0 0 chr3 124743056 124743084 -34856699 + AT_rich Low_complexity Low_complexity 1 28 0 3 1536 203 237 0 0 chr3 124743244 124743281 -34856502 + T-rich Low_complexity Low_complexity 23 59 0 3 1536 811 79 167 0 chr3 124743281 124743407 -34856376 - B1_Mm SINE Alu 0 147 1 3 1536 203 237 0 0 chr3 124743407 124743428 -34856355 + T-rich Low_complexity Low_complexity 2 22 0 3 1536 24 0 0 0 chr3 124743500 124743524 -34856259 + AT_rich Low_complexity Low_complexity 1 24 0 3 1536 22 35 0 0 chr3 124743536 124743565 -34856218 + AT_rich Low_complexity Low_complexity 1 29 0 3 1536 509 260 38 43 chr3 124743571 124743756 -34856027 - B3A SINE B2 -11 187 4 3 1536 1201 98 0 11 chr3 124743865 124744051 -34855732 - L1Md_F2 LINE L1 -4 6578 6395 3 1536 429 20 0 0 chr3 124744174 124744224 -34855559 + (TA)n Simple_repeat Simple_repeat 2 51 0 3 1536 22 0 0 0 chr3 124744237 124744259 -34855524 + AT_rich Low_complexity Low_complexity 1 22 0 3 1536 275 318 9 18 chr3 124746287 124746399 -34853384 + (TG)n Simple_repeat Simple_repeat 2 112 0 3 1536 601 309 39 0 chr3 124747140 124747318 -34852465 + MTD LTR MaLR 6 190 -229 3 1536 198 143 0 0 chr3 124747773 124747808 -34851975 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 3 1536 838 209 0 0 chr3 124747819 124747958 -34851825 - B1_Mus2 SINE Alu -7 140 2 3 1536 180 163 0 0 chr3 124748347 124748390 -34851393 + (CA)n Simple_repeat Simple_repeat 1 43 0 3 1536 945 64 53 67 chr3 124748576 124748726 -34851057 + B1_Mus1 SINE Alu 1 148 0 3 1536 343 331 16 0 chr3 124748965 124749086 -34850697 - MIR3 SINE MIR -4 204 82 3 1536 224 170 19 0 chr3 124749717 124749770 -34850013 + (TA)n Simple_repeat Simple_repeat 1 54 0 3 1536 583 340 19 13 chr3 124749776 124749931 -34849852 - B3A SINE B2 -34 164 9 3 1536 25 65 0 0 chr3 124750587 124750633 -34849150 + AT_rich Low_complexity Low_complexity 1 46 0 3 1536 1855 281 70 73 chr3 124750741 124751504 -34848279 + Lx5 LINE L1 5925 6684 -366 3 1536 1078 8 0 15 chr3 124751826 124751959 -34847824 + (TATATG)n Simple_repeat Simple_repeat 3 133 0 3 1536 211 269 0 37 chr3 124753366 124753420 -34846363 + RSINE1 SINE B4 11 62 -103 3 1536 1214 248 120 30 chr3 124753582 124753948 -34845835 + MTD LTR MaLR 18 416 -3 3 1536 24 0 0 0 chr3 124755207 124755231 -34844552 + AT_rich Low_complexity Low_complexity 1 24 0 3 1536 1137 111 0 0 chr3 124756261 124756433 -34843350 + (TTTC)n Simple_repeat Simple_repeat 4 175 0 3 1536 400 284 123 0 chr3 124757685 124757840 -34841943 + MER5B DNA MER1_type 5 178 0 3 1536 22 56 0 0 chr3 124758331 124758367 -34841416 + AT_rich Low_complexity Low_complexity 1 36 0 3 1536 425 50 17 0 chr3 124758448 124758508 -34841275 + (TCTA)n Simple_repeat Simple_repeat 2 62 0 3 1536 450 94 0 0 chr3 124758531 124758595 -34841188 + (TA)n Simple_repeat Simple_repeat 2 65 0 3 1536 266 346 18 67 chr3 124758676 124758840 -34840943 - Ricksha_c DNA MuDR -1155 893 738 3 1536 503 303 22 22 chr3 124759008 124759187 -34840596 - Ricksha_c DNA MuDR -1517 531 353 3 1536 1071 314 84 19 chr3 124759430 124759952 -34839831 + Lx8 LINE L1 6503 7058 -415 3 1536 4471 56 9 0 chr3 124760193 124760749 -34839034 - L1Md_F2 LINE L1 -12 6570 6010 3 1536 214 68 68 0 chr3 124760822 124760866 -34838917 + (TTTTA)n Simple_repeat Simple_repeat 2 48 0 3 1536 251 323 0 46 chr3 124760907 124761037 -34838746 - Lx2B LINE L1 0 7000 6877 3 1536 8807 147 21 8 chr3 124761036 124762638 -34837145 + L1_Mur1 LINE L1 2837 4458 -1428 3 1536 30 27 0 0 chr3 124762639 124762676 -34837107 + AT_rich Low_complexity Low_complexity 1 37 0 3 1536 303 303 135 26 chr3 124762860 124763053 -34836730 - L2 LINE L2 -550 2869 2656 3 1536 234 0 0 0 chr3 124763241 124763267 -34836516 + (TAA)n Simple_repeat Simple_repeat 3 28 0 3 1536 1395 168 14 31 chr3 124763286 124763575 -34836208 - Lx3B LINE L1 -2 6971 6688 3 1536 6974 83 7 2 chr3 124763623 124764566 -34835217 + L1_Mus3 LINE L1 5691 6638 0 3 1536 807 11 0 0 chr3 124764639 124764731 -34835052 + (TTTCC)n Simple_repeat Simple_repeat 3 94 0 3 1536 349 207 19 124 chr3 124764865 124764970 -34834813 + MTC LTR MaLR 1 94 -327 3 1536 331 289 32 40 chr3 124765018 124765144 -34834639 - Lx7 LINE L1 -388 7308 7184 3 1536 2530 240 42 26 chr3 124765211 124765856 -34833927 - Lx6 LINE L1 -172 7288 6634 3 1536 1598 42 5 0 chr3 124766335 124766527 -34833256 + B2_Mm1t SINE B2 1 193 0 3 1536 218 325 52 0 chr3 124766648 124766725 -34833058 + B3 SINE B2 1 81 -135 3 1536 23 0 0 0 chr3 124766908 124766931 -34832852 + AT_rich Low_complexity Low_complexity 1 23 0 3 1536 269 51 26 0 chr3 124766931 124766970 -34832813 + (TG)n Simple_repeat Simple_repeat 2 41 0 3 1536 321 311 84 9 chr3 124766973 124767080 -34832703 - B3A SINE B2 -48 150 36 3 1536 930 48 0 0 chr3 124767162 124767286 -34832497 + (GA)n Simple_repeat Simple_repeat 1 124 0 3 1536 804 177 72 0 chr3 124767396 124767577 -34832206 - Lx2B LINE L1 -7 6993 6800 3 1536 370 374 6 17 chr3 124767586 124767763 -34832020 - MLT1B LTR MaLR -34 356 182 3 1536 236 284 0 13 chr3 124768065 124768140 -34831643 - L1MD3 LINE L1 -497 7498 7425 3 1536 306 317 113 22 chr3 124768306 124768757 -34831026 - L1MC LINE L1 -1902 4244 3753 3 1536 230 298 114 17 chr3 124768830 124769127 -34830656 - L1MC LINE L1 -2675 3471 3146 3 1536 1549 179 28 109 chr3 124769366 124769724 -34830059 - ORR1A4 LTR MaLR 0 329 1 3 1536 1272 325 42 38 chr3 124770037 124770615 -34829168 + Lx9 LINE L1 6702 7281 -363 3 1536 508 116 21 0 chr3 124771022 124771117 -34828666 + (TG)n Simple_repeat Simple_repeat 2 98 0 3 1536 513 395 30 0 chr3 124771130 124771363 -34828420 - B4A SINE B4 -48 244 5 3 1536 660 48 0 0 chr3 124773761 124773845 -34825938 + (CA)n Simple_repeat Simple_repeat 2 85 0 3 1536 23 0 0 0 chr3 124774551 124774574 -34825209 + AT_rich Low_complexity Low_complexity 1 23 0 3 1536 372 345 0 0 chr3 124775638 124775754 -34824029 + B3A SINE B2 1 116 -82 3 1536 1465 254 38 42 chr3 124775767 124776243 -34823540 + Lx9 LINE L1 7000 7473 -171 3 1536 28 29 0 0 chr3 124776309 124776344 -34823439 + AT_rich Low_complexity Low_complexity 1 35 0 3 1536 458 113 14 0 chr3 124777857 124777938 -34821845 - L1_Mus3 LINE L1 -571 6067 5982 3 1536 731 263 35 59 chr3 124777933 124778272 -34821511 + L1_Mur3 LINE L1 2556 2886 -2994 3 1536 195 203 0 0 chr3 124778277 124778336 -34821447 + (TTATA)n Simple_repeat Simple_repeat 5 63 0 3 1536 465 269 87 56 chr3 124778403 124778761 -34821022 + L1_Mur3 LINE L1 2896 3264 -2616 3 23 38446 6 0 0 chr3 124778787 124784362 -34815421 + L1Md_A LINE L1 12 5586 -297 3 1537 9029 2 0 0 chr3 124784362 124785358 -34814425 + L1Md_A LINE L1 5587 6582 0 3 1537 726 186 0 0 chr3 124785412 124785541 -34814242 - Lx2B LINE L1 -413 6587 6459 3 1537 236 127 55 0 chr3 124785541 124785596 -34814187 + L1_Mus3 LINE L1 6578 6635 -3 3 1537 32 57 0 0 chr3 124785629 124785682 -34814101 + AT_rich Low_complexity Low_complexity 1 53 0 3 1537 322 233 65 61 chr3 124785786 124786033 -34813750 + L1_Rod LINE L1 5175 5422 -425 3 1537 462 36 0 0 chr3 124786040 124786096 -34813687 + (GGGA)n Simple_repeat Simple_repeat 4 59 0 3 1537 26 0 0 0 chr3 124786166 124786192 -34813591 + AT_rich Low_complexity Low_complexity 1 26 0 3 1537 25 0 0 0 chr3 124786964 124786989 -34812794 + AT_rich Low_complexity Low_complexity 1 25 0 3 1537 21 36 0 0 chr3 124788165 124788193 -34811590 + AT_rich Low_complexity Low_complexity 1 28 0 3 1537 612 288 109 55 chr3 124788679 124788954 -34810829 - Lx8 LINE L1 -12 7461 7172 3 1537 356 204 47 14 chr3 124789037 124789148 -34810635 + Lx3C LINE L1 6879 7000 0 4 1537 305 264 0 27 chr3 124789190 124789264 -34810519 + Lx8 LINE L1 7078 7149 -324 4 1537 647 275 7 0 chr3 124790017 124790166 -34809617 + B3 SINE B2 67 216 0 4 1537 26 0 0 0 chr3 124790489 124790515 -34809268 + AT_rich Low_complexity Low_complexity 1 26 0 4 1537 956 199 45 0 chr3 124790524 124790725 -34809058 + B3 SINE B2 1 210 -6 4 1537 342 0 0 0 chr3 124790859 124790897 -34808886 + (TG)n Simple_repeat Simple_repeat 2 39 0 4 1537 780 316 57 41 chr3 124790941 124791486 -34808297 - Lx9 LINE L1 -366 7278 6691 4 1537 524 262 8 8 chr3 124791709 124791836 -34807947 - Lx9 LINE L1 -822 6822 6696 4 1537 226 194 43 43 chr3 124792734 124792804 -34806979 + Lx9 LINE L1 7404 7473 -171 4 1537 21 71 0 0 chr3 124792958 124793000 -34806783 + AT_rich Low_complexity Low_complexity 1 42 0 4 1537 2809 90 29 17 chr3 124794107 124794524 -34805259 + BGLII_Mus LTR ERVK 1 422 0 4 1537 31 44 0 0 chr3 124794943 124794988 -34804795 + AT_rich Low_complexity Low_complexity 1 45 0 4 1537 26 0 0 0 chr3 124795336 124795362 -34804421 + AT_rich Low_complexity Low_complexity 1 26 0 4 1537 1934 168 17 137 chr3 124797091 124797609 -34802174 - RMER6A LTR ERVK -81 675 220 4 1537 285 254 0 41 chr3 124797610 124797707 -34802076 + Lx8 LINE L1 5643 5749 -1947 4 1537 539 284 40 50 chr3 124798125 124798469 -34801314 + Lx8 LINE L1 5747 6093 -1603 4 1537 596 282 65 25 chr3 124798629 124798829 -34800954 + B3 SINE B2 9 216 0 4 1537 505 273 11 115 chr3 124799461 124799635 -34800148 + B4 SINE B4 2 157 -135 4 1537 392 296 29 29 chr3 124800091 124800230 -34799553 - B1F SINE Alu 0 149 11 4 1537 21 82 0 0 chr3 124800950 124800999 -34798784 + AT_rich Low_complexity Low_complexity 1 49 0 4 1537 429 20 0 0 chr3 124801279 124801329 -34798454 + (TG)n Simple_repeat Simple_repeat 2 51 0 4 1537 1211 41 7 0 chr3 124801608 124801754 -34798029 - B1_Mus2 SINE Alu 0 147 1 4 1537 1088 104 32 37 chr3 124801754 124801933 -34797850 - B2_Mm2 SINE B2 -14 181 1 4 1537 552 309 58 5 chr3 124802055 124802244 -34797539 - B3 SINE B2 -17 199 1 4 1537 2002 189 47 3 chr3 124803643 124804025 -34795758 - Lx9 LINE L1 -797 6847 6449 4 1537 1180 77 0 0 chr3 124804120 124804276 -34795507 + Lx3_Mus LINE L1 5691 5846 -1163 4 1537 4035 90 66 0 chr3 124804276 124804853 -34794930 + Lx3_Mus LINE L1 6395 7009 0 4 1537 545 229 130 0 chr3 124805745 124805876 -34793907 - B1_Mur1 SINE Alu -1 148 1 4 1537 730 316 70 25 chr3 124805914 124806265 -34793518 + Lx7 LINE L1 6739 7119 -354 4 1537 3628 48 35 4 chr3 124806265 124806437 -34793346 - MT2C_Mm LTR ERVL 0 475 304 4 1537 348 24 0 0 chr3 124806437 124806478 -34793305 + (GA)n Simple_repeat Simple_repeat 1 41 0 4 1537 3628 48 35 4 chr3 124806478 124806766 -34793017 - MT2C_Mm LTR ERVL -172 303 2 4 1537 633 347 57 24 chr3 124806766 124806833 -34792950 + Lx7 LINE L1 7120 7182 -291 4 1537 22 35 0 0 chr3 124807016 124807045 -34792738 + AT_rich Low_complexity Low_complexity 1 29 0 4 1537 21 0 0 0 chr3 124807233 124807254 -34792529 + AT_rich Low_complexity Low_complexity 1 21 0 4 1537 316 222 0 0 chr3 124808052 124808115 -34791668 - ORR1E LTR MaLR 0 359 297 4 1537 269 188 35 23 chr3 124808125 124808212 -34791571 + (TTATA)n Simple_repeat Simple_repeat 1 88 0 4 1537 697 319 71 9 chr3 124808263 124808475 -34791308 - ORR1E LTR MaLR -132 227 3 4 1537 408 399 38 34 chr3 124808572 124808863 -34790920 - LTR40a LTR ERVL -154 365 74 4 1537 234 125 0 0 chr3 124808914 124808962 -34790821 + (T)n Simple_repeat Simple_repeat 1 48 0 4 1537 3385 163 94 11 chr3 124809252 124809910 -34789873 + RMER6D LTR ERVK 3 715 -5 4 1537 2685 190 100 16 chr3 124809915 124810526 -34789257 + RMER6-int LTR ERVK 1 662 -2515 4 1537 1028 196 41 98 chr3 124810639 124810980 -34788803 - RLTRETN_Mm LTR ERVK 0 409 1 4 1537 333 0 0 0 chr3 124811139 124811176 -34788607 + (TTTAA)n Simple_repeat Simple_repeat 5 41 0 4 1537 902 139 207 18 chr3 124811189 124811358 -34788425 - B3 SINE B2 -15 201 1 4 1537 5129 163 27 38 chr3 124811620 124812252 -34787531 + RMER6-int LTR ERVK 650 1294 -1883 4 1537 1101 75 0 20 chr3 124812252 124812402 -34787381 + B1_Mus1 SINE Alu 2 148 0 4 1537 5129 163 27 38 chr3 124812402 124812766 -34787017 + RMER6-int LTR ERVK 1295 1635 -1542 4 1537 441 250 0 29 chr3 124812776 124812879 -34786904 + RMER6D LTR ERVK 621 720 0 4 1537 342 0 0 0 chr3 124813088 124813126 -34786657 + (TG)n Simple_repeat Simple_repeat 2 39 0 4 1537 506 119 0 12 chr3 124813432 124813517 -34786266 + (TTTC)n Simple_repeat Simple_repeat 1 84 0 4 1537 921 119 21 7 chr3 124813517 124813661 -34786122 - B1_Mus1 SINE Alu 0 148 3 4 1537 1448 181 21 25 chr3 124814314 124814598 -34785185 + RMER20B LTR ERVK 13 295 -332 4 1537 2703 230 72 5 chr3 124814614 124815225 -34784558 - Lx5 LINE L1 -6 7044 6393 4 1537 933 280 43 43 chr3 124815226 124815528 -34784255 + RMER20B LTR ERVK 282 583 -44 4 1537 24 0 0 0 chr3 124816054 124816078 -34783705 + AT_rich Low_complexity Low_complexity 1 24 0 4 1537 495 262 68 47 chr3 124817021 124817213 -34782570 - B3A SINE B2 0 198 3 4 1537 3068 63 2 8 chr3 124817596 124817994 -34781789 + MTA_Mm LTR MaLR 1 396 0 4 1537 594 273 91 0 chr3 124818070 124818257 -34781526 + B3 SINE B2 1 204 -12 4 1537 186 118 0 0 chr3 124819793 124819827 -34779956 + (TTGG)n Simple_repeat Simple_repeat 2 35 0 4 1537 21 0 0 0 chr3 124820369 124820390 -34779393 + AT_rich Low_complexity Low_complexity 1 21 0 4 1537 529 261 97 0 chr3 124820870 124821004 -34778779 + ID_B1 SINE B4 78 224 0 4 1537 1738 152 122 10 chr3 124822847 124823186 -34776597 + ORR1B1 LTR MaLR 17 386 -8 4 1537 4598 194 53 7 chr3 124823190 124823469 -34776314 + ORR1B1-int LTR MaLR 1 286 -1223 4 1537 703 0 11 11 chr3 124823469 124823557 -34776226 + (GAAA)n Simple_repeat Simple_repeat 2 89 0 4 1537 4598 194 53 7 chr3 124823557 124824284 -34775499 + ORR1B1-int LTR MaLR 287 1052 -457 4 1537 3945 161 27 7 chr3 124824290 124825038 -34774745 + L1_Mur2 LINE L1 4639 5439 -861 4 1537 250 383 0 9 chr3 124825176 124825292 -34774491 - Tigger1 DNA MER2_type -361 2057 1943 4 1537 707 109 8 25 chr3 124825491 124825613 -34774170 + RLTR15 LTR ERVK 2 121 -238 4 1537 4164 101 36 95 chr3 124825645 124826443 -34773340 + RMER17A LTR ERVK 1 751 0 4 1537 241 333 32 0 chr3 124827101 124827194 -34772589 + Lx7 LINE L1 7211 7306 -390 4 1537 211 225 0 0 chr3 124827204 124827244 -34772539 + (TG)n Simple_repeat Simple_repeat 1 40 0 4 1537 36 23 0 0 chr3 124827417 124827460 -34772323 + AT_rich Low_complexity Low_complexity 1 43 0 4 1537 483 301 90 35 chr3 124827473 124827728 -34772055 + RMER5 LTR ERV1 68 336 -198 4 1537 2168 266 15 60 chr3 124828085 124828698 -34771085 - Lx6 LINE L1 -983 6477 5893 4 1537 511 197 115 23 chr3 124828734 124828864 -34770919 + B1_Mur3 SINE Alu 1 142 -7 4 1537 306 0 0 0 chr3 124830290 124830324 -34769459 + (TC)n Simple_repeat Simple_repeat 1 34 0 4 1537 198 0 0 0 chr3 124830324 124830345 -34769438 + (CA)n Simple_repeat Simple_repeat 1 22 0 4 1537 4385 62 21 5 chr3 124832136 124832718 -34767065 - L1Md_F2 LINE L1 -12 6570 5980 4 1537 38 51 0 0 chr3 124832923 124832982 -34766801 + AT_rich Low_complexity Low_complexity 1 59 0 4 1537 180 200 0 0 chr3 124833067 124833107 -34766676 + CT-rich Low_complexity Low_complexity 1 40 0 4 1537 631 309 76 63 chr3 124833135 124833436 -34766347 - Lx7 LINE L1 -349 7347 7043 4 1537 542 87 0 12 chr3 124834245 124834327 -34765456 + (GAAA)n Simple_repeat Simple_repeat 3 83 0 4 1537 228 321 0 0 chr3 124834349 124834405 -34765378 - B4A SINE B4 -235 57 2 4 1537 424 316 84 16 chr3 124834598 124834788 -34764995 + B3 SINE B2 1 203 -13 4 1537 243 224 0 0 chr3 124835860 124835909 -34763874 + PB1D9 SINE Alu 10 58 -62 4 1537 1906 166 139 85 chr3 124835909 124836463 -34763320 + RLTR6_Mm LTR ERV1 1 584 -70 4 1537 379 238 12 0 chr3 124836463 124836543 -34763240 + B1_Mur1 SINE Alu 55 135 -14 4 1537 371 227 45 9 chr3 124837410 124837521 -34762262 + RLTR10A LTR ERVK 133 247 -164 4 1537 488 244 145 51 chr3 124837596 124837851 -34761932 - RLTR10A LTR ERVK 0 411 133 4 1537 253 342 155 19 chr3 124838120 124838267 -34761516 - MLT1C LTR MaLR -2 465 296 4 1537 2099 65 236 3 chr3 124838267 124838577 -34761206 - IAPEY_LTR LTR ERVK -3 382 1 4 1537 284 304 101 35 chr3 124839461 124839659 -34760124 + L2a LINE L2 3182 3392 -34 4 1537 257 287 55 94 chr3 124839991 124840118 -34759665 - B2_Mm2 SINE B2 -70 125 4 4 1537 740 275 35 35 chr3 124840122 124840322 -34759461 - B3 SINE B2 -14 202 3 4 1537 297 0 0 0 chr3 124841727 124841760 -34758023 + (TA)n Simple_repeat Simple_repeat 1 33 0 4 1537 5514 281 36 39 chr3 124841779 124843616 -34756167 - Lx6 LINE L1 -1 7459 5628 4 1537 1083 221 50 33 chr3 124843616 124844030 -34755753 + Lx6 LINE L1 5441 5953 -1105 4 1537 14069 176 48 63 chr3 124844056 124844525 -34755258 - L1_Mur3 LINE L1 -1207 4673 4175 4 1537 2954 65 19 2 chr3 124844525 124844939 -34754844 - BGLII LTR ERVK 0 421 1 4 1537 14069 176 48 63 chr3 124844939 124846228 -34753555 - L1_Mur3 LINE L1 -1706 4174 2999 4 1537 1104 70 0 0 chr3 124846228 124846370 -34753413 - B1_Mus2 SINE Alu -1 146 5 4 1537 14069 176 48 63 chr3 124846370 124846724 -34753059 - L1_Mur3 LINE L1 -2882 2998 2645 4 1537 267 31 0 0 chr3 124846724 124846756 -34753027 + (TG)n Simple_repeat Simple_repeat 2 33 0 4 1537 14069 176 48 63 chr3 124846756 124847015 -34752768 - L1_Mur3 LINE L1 -3236 2644 2379 4 1537 1551 188 12 61 chr3 124847015 124847361 -34752422 - ORR1A4 LTR MaLR 0 329 1 4 1537 14069 176 48 63 chr3 124847361 124847677 -34752106 - L1_Mur3 LINE L1 -3502 2378 2059 4 1537 480 18 0 0 chr3 124847677 124847734 -34752049 + (TG)n Simple_repeat Simple_repeat 2 58 0 4 1537 14069 188 47 45 chr3 124847734 124848903 -34750880 - L1_Mur3 LINE L1 -3822 2058 849 4 1537 977 322 69 3 chr3 124848941 124849330 -34750453 - L1_Mur3 LINE L1 -7198 530 116 4 1537 1380 207 38 54 chr3 124849499 124849943 -34749840 - RMER6A LTR ERVK -38 718 355 4 1537 27 0 0 0 chr3 124849950 124849977 -34749806 + AT_rich Low_complexity Low_complexity 1 27 0 4 1537 664 225 169 11 chr3 124851388 124851572 -34748211 - B3 SINE B2 -3 213 1 4 1537 624 177 33 5 chr3 124851781 124851962 -34747821 - MTB_Mm LTR MaLR 0 407 103 4 1537 635 174 11 16 chr3 124852301 124852466 -34747317 - MTB LTR MaLR -244 163 1 4 1537 273 297 59 10 chr3 124852602 124852704 -34747079 + Tigger7 DNA MER2_type 2146 2252 -239 4 1537 725 277 40 156 chr3 124852721 124852935 -34746848 + MTE2a LTR MaLR 6 183 -196 4 1537 2819 91 71 49 chr3 124852935 124853443 -34746340 - MURVY-LTR LTR ERV1 0 519 1 4 1537 725 277 40 156 chr3 124853443 124853651 -34746132 + MTE2a LTR MaLR 184 379 0 4 1537 347 236 7 0 chr3 124853922 124854062 -34745721 + (TG)n Simple_repeat Simple_repeat 1 141 0 4 1537 616 355 0 0 chr3 124854475 124854686 -34745097 - B3 SINE B2 -5 211 1 5 1537 421 146 20 50 chr3 124855395 124855496 -34744287 + HAL1-2a_MD LINE L1 2331 2428 -596 5 1537 1563 246 3 38 chr3 124855609 124855976 -34743807 + Lx7 LINE L1 6687 7040 -656 5 1537 1900 266 14 64 chr3 124855978 124856541 -34743242 + RMER19C LTR ERVK 77 611 0 5 1537 777 239 62 82 chr3 124856544 124856899 -34742884 + Lx7 LINE L1 7349 7696 0 5 1537 303 284 73 10 chr3 124856904 124857000 -34742783 - MTD LTR MaLR -44 375 274 5 1537 2142 154 20 84 chr3 124857000 124857488 -34742295 - RMER6B LTR ERVK -4 457 1 5 1537 13562 165 57 57 chr3 124857491 124860100 -34739683 - MYSERV6-int LTR ERVK -1195 7764 5051 5 1537 212 288 17 17 chr3 124860100 124860160 -34739623 - B1_Mus2 SINE Alu -78 69 10 5 1537 13562 165 57 57 chr3 124860160 124860200 -34739583 - MYSERV6-int LTR ERVK -3909 5050 5010 5 1537 270 196 196 0 chr3 124860200 124860256 -34739527 - B1_Mur4 SINE Alu -78 72 6 5 1537 13562 165 57 57 chr3 124860256 124860435 -34739348 - MYSERV6-int LTR ERVK -1195 5009 4820 5 1537 560 217 17 101 chr3 124860435 124860614 -34739169 + RMER10B LTR ERVL 179 342 -56 5 1537 238 93 51 39 chr3 124860614 124860692 -34739091 + (CAAA)n Simple_repeat Simple_repeat 2 80 0 5 1537 353 184 0 75 chr3 124860704 124860798 -34738985 - MYSERV6-int LTR ERVK -4202 4757 4671 5 1537 287 225 62 12 chr3 124860812 124860893 -34738890 - MYSERV6-int LTR ERVK -4262 4697 4613 5 1537 876 214 15 25 chr3 124860890 124861091 -34738692 - MurERV4-int LTR ERVK -2261 2999 2801 5 1537 180 286 0 0 chr3 124861166 124861215 -34738568 + L2 LINE L2 719 767 -2652 5 1537 31 44 0 0 chr3 124861731 124861776 -34738007 + AT_rich Low_complexity Low_complexity 1 45 0 5 1537 379 336 8 0 chr3 124861798 124861917 -34737866 - RSINE1 SINE B4 -42 123 4 5 1537 2435 209 18 107 chr3 124862072 124862247 -34737536 + RMER15 LTR ERVL 5 159 -416 5 1537 2456 58 0 0 chr3 124862247 124862556 -34737227 + L1Md_F2 LINE L1 6262 6570 -12 5 1537 2435 209 18 107 chr3 124862556 124863007 -34736776 + RMER15 LTR ERVL 160 575 0 5 1537 404 276 162 26 chr3 124863301 124863535 -34736248 - L1MC2 LINE L1 -209 6135 5870 5 1537 2196 250 48 75 chr3 124864489 124865246 -34734537 + RLTR40 LTR ERVK 8 743 -74 5 1537 543 272 48 91 chr3 124865348 124865534 -34734249 - B3 SINE B2 -9 186 9 5 1537 487 358 86 24 chr3 124865564 124865985 -34733798 - L1MC2 LINE L1 -2035 5750 5304 5 1537 226 310 17 0 chr3 124866152 124866210 -34733573 - ID SINE ID -158 66 8 5 1537 37 62 0 0 chr3 124866252 124866317 -34733466 + AT_rich Low_complexity Low_complexity 1 65 0 5 1537 279 0 0 0 chr3 124866354 124866385 -34733398 + (CA)n Simple_repeat Simple_repeat 2 32 0 5 1537 1038 243 145 39 chr3 124866621 124866959 -34732824 + ORR1D1 LTR MaLR 1 374 0 5 1537 180 0 0 0 chr3 124867886 124867906 -34731877 + (A)n Simple_repeat Simple_repeat 1 20 0 5 1537 366 290 18 14 chr3 124868267 124868394 -34731389 + B1F SINE Alu 1 118 -2 5 1537 1789 193 16 3 chr3 124868562 124868930 -34730853 + Lx LINE L1 6268 6640 -14 5 1537 975 278 66 21 chr3 124869089 124869376 -34730407 + MTE2b LTR MaLR 68 367 -12 5 1537 294 29 0 0 chr3 124869454 124869489 -34730294 + (TTA)n Simple_repeat Simple_repeat 2 36 0 5 1537 329 323 134 91 chr3 124869571 124869847 -34729936 + MTEb LTR MaLR 27 314 -65 5 1537 2763 95 10 0 chr3 124871714 124872105 -34727678 - Lx LINE L1 -521 6133 5739 5 1537 690 179 21 183 chr3 124872101 124872199 -34727584 - L1_Mm LINE L1 -853 5030 4935 5 1537 557 12 49 0 chr3 124872199 124872280 -34727503 + L1Md_F3 LINE L1 6499 6583 -1 5 1537 690 179 21 183 chr3 124872280 124872421 -34727362 - L1_Mm LINE L1 -949 4934 4830 5 1537 409 375 34 25 chr3 124872422 124872660 -34727123 - B4A SINE B4 -14 278 39 5 1537 342 0 0 0 chr3 124872832 124872870 -34726913 + (TG)n Simple_repeat Simple_repeat 2 39 0 5 1537 579 85 0 0 chr3 124874318 124874400 -34725383 + (TTTCC)n Simple_repeat Simple_repeat 5 86 0 5 1537 289 287 162 42 chr3 124874475 124874752 -34725031 + MLT1C LTR MaLR 53 465 -2 5 1537 22 35 0 0 chr3 124875728 124875757 -34724026 + AT_rich Low_complexity Low_complexity 1 29 0 5 1537 462 79 0 0 chr3 124875780 124875843 -34723940 + (TA)n Simple_repeat Simple_repeat 2 64 0 5 1537 798 9 147 0 chr3 124876408 124876517 -34723266 - L1Md_A LINE L1 0 6582 6458 5 1537 21 0 0 0 chr3 124877643 124877664 -34722119 + AT_rich Low_complexity Low_complexity 1 21 0 5 1537 550 318 58 35 chr3 124877699 124878009 -34721774 - Lx8 LINE L1 -1569 5904 5588 5 1537 1254 322 92 30 chr3 124878059 124879255 -34720528 + L1_Mur3 LINE L1 4360 5629 -251 5 1537 583 224 177 16 chr3 124880006 124880192 -34719591 + B3 SINE B2 1 216 0 5 1537 282 29 0 0 chr3 124880272 124880307 -34719476 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 5 1537 9750 102 10 10 chr3 124880309 124882242 -34717541 + Lx3_Mus LINE L1 5071 7001 -8 5 1537 198 167 0 0 chr3 124882281 124882317 -34717466 + A-rich Low_complexity Low_complexity 1 36 0 5 1537 5040 117 44 1 chr3 124882317 124883108 -34716675 + Lx LINE L1 5827 6651 -3 5 1537 23 54 0 0 chr3 124883354 124883391 -34716392 + AT_rich Low_complexity Low_complexity 1 37 0 5 1537 3434 221 130 29 chr3 124884274 124884994 -34714789 + RMER12 LTR ERVK 1 767 -555 5 1537 495 0 0 0 chr3 124884994 124885049 -34714734 + (TCCA)n Simple_repeat Simple_repeat 1 55 0 5 1537 3434 226 130 42 chr3 124885049 124885570 -34714213 + RMER12 LTR ERVK 768 1135 -187 5 1537 4125 99 29 89 chr3 124885570 124886369 -34713414 - RMER17A LTR ERVK 0 751 1 5 1537 180 0 0 0 chr3 124886490 124886510 -34713273 + (TC)n Simple_repeat Simple_repeat 2 21 0 5 1537 591 178 0 0 chr3 124886510 124886622 -34713161 + (TA)n Simple_repeat Simple_repeat 1 112 0 5 1537 220 39 0 0 chr3 124886622 124886648 -34713135 + (TG)n Simple_repeat Simple_repeat 2 27 0 5 1537 4970 234 64 40 chr3 124887423 124889127 -34710656 + Lx7 LINE L1 5254 7010 -686 5 1537 5177 50 2 0 chr3 124889127 124889765 -34710018 - L1Md_F2 LINE L1 0 5883 5245 5 1537 5137 63 28 9 chr3 124889765 124890452 -34709331 + L1Md_F2 LINE L1 5870 6569 -13 5 1537 1490 240 77 65 chr3 124890452 124891009 -34708774 + Lx7 LINE L1 7003 7566 -130 5 1537 4978 182 51 30 chr3 124891022 124892072 -34707711 - Lx4B LINE L1 -2 7056 5984 5 1537 412 231 8 8 chr3 124892094 124892212 -34707571 + Lx7 LINE L1 7577 7694 -2 5 1537 531 344 4 27 chr3 124892241 124892498 -34707285 + Lx7 LINE L1 7117 7367 -329 5 1537 38 51 0 0 chr3 124892673 124892732 -34707051 + AT_rich Low_complexity Low_complexity 1 59 0 5 1537 324 0 0 0 chr3 124892842 124892878 -34706905 + (CA)n Simple_repeat Simple_repeat 2 37 0 5 1537 23 33 0 0 chr3 124892927 124892957 -34706826 + AT_rich Low_complexity Low_complexity 1 30 0 5 1537 358 283 113 0 chr3 124893106 124893212 -34706571 - PB1 SINE Alu -3 124 7 5 1537 996 314 79 33 chr3 124895715 124896511 -34703272 + L1MA6 LINE L1 5367 6199 -101 5 1537 1025 38 0 0 chr3 124896703 124896836 -34702947 + L1Md_F2 LINE L1 6439 6571 -11 5 1537 812 273 40 5 chr3 124897397 124897596 -34702187 + B3 SINE B2 7 212 -4 5 1537 381 43 0 0 chr3 124897855 124897902 -34701881 + (TTTTA)n Simple_repeat Simple_repeat 3 49 0 5 1537 8661 133 43 29 chr3 124897902 124900211 -34699572 - Lx4A LINE L1 -7 7051 4697 5 1537 381 172 0 0 chr3 124900397 124900461 -34699322 + B2_Mm2 SINE B2 5 68 -127 5 1537 204 111 0 0 chr3 124901000 124901036 -34698747 + (TG)n Simple_repeat Simple_repeat 1 36 0 5 1537 638 272 117 77 chr3 124901891 124902067 -34697716 + MTD LTR MaLR 2 201 -218 5 1537 315 71 0 0 chr3 124902067 124902109 -34697674 + (TG)n Simple_repeat Simple_repeat 1 42 0 5 1537 638 272 117 77 chr3 124902109 124902334 -34697449 + MTD LTR MaLR 202 419 0 5 1537 203 0 37 0 chr3 124902518 124902545 -34697238 + (CA)n Simple_repeat Simple_repeat 1 28 0 5 1537 717 12 0 0 chr3 124902545 124902626 -34697157 + (GA)n Simple_repeat Simple_repeat 2 83 0 5 1537 261 57 0 0 chr3 124903104 124903139 -34696644 + (TCTCTG)n Simple_repeat Simple_repeat 2 36 0 5 1537 360 0 0 0 chr3 124903140 124903180 -34696603 + (TG)n Simple_repeat Simple_repeat 1 40 0 5 1537 592 200 78 136 chr3 124904640 124904831 -34694952 - B3A SINE B2 0 195 16 5 1537 2804 177 97 14 chr3 124904914 124905551 -34694232 + RMER6C LTR ERVK 1 690 0 5 1537 38 22 0 0 chr3 124906540 124906585 -34693198 + AT_rich Low_complexity Low_complexity 1 45 0 5 1537 23 54 0 0 chr3 124906972 124907009 -34692774 + AT_rich Low_complexity Low_complexity 1 37 0 5 1537 32 0 0 0 chr3 124907184 124907216 -34692567 + AT_rich Low_complexity Low_complexity 1 32 0 5 1537 342 240 10 30 chr3 124907378 124907477 -34692306 - Lx6 LINE L1 -6 7454 7358 5 1537 529 226 64 21 chr3 124907522 124907662 -34692121 - B1_Mur3 SINE Alu -3 146 1 5 1537 29 47 0 0 chr3 124908036 124908079 -34691704 + AT_rich Low_complexity Low_complexity 1 43 0 5 1537 1058 236 41 0 chr3 124908420 124908666 -34691117 - Lx6 LINE L1 -14 7446 7191 5 1537 799 197 241 72 chr3 124908666 124908931 -34690852 - RLTR24 LTR ERV1 -1 528 219 5 1537 277 354 57 24 chr3 124908952 124909198 -34690585 - RLTR15 LTR ERVK -8 351 98 5 1537 279 114 0 0 chr3 124909262 124909306 -34690477 + (TCCC)n Simple_repeat Simple_repeat 2 45 0 5 1537 238 217 93 19 chr3 124909306 124909414 -34690369 - RLTR15 LTR ERVK -221 138 23 5 1537 1154 140 17 0 chr3 124909424 124909602 -34690181 - RLTR24 LTR ERV1 -348 181 1 5 1537 1483 250 88 11 chr3 124909602 124909966 -34689817 - Lx6 LINE L1 -265 7195 6804 5 1537 660 263 60 25 chr3 124909967 124910166 -34689617 - L1_Mur3 LINE L1 -7171 541 336 5 1537 200 111 43 22 chr3 124911322 124911368 -34688415 + T-rich Low_complexity Low_complexity 5 51 0 5 192 41145 8 0 1 chr3 124911583 124918552 -34681231 - L1Md_A LINE L1 0 6582 1 5 1538 759 287 134 12 chr3 124918649 124918896 -34680887 + RMER1A Other Other 1 277 -753 5 1538 3378 239 21 10 chr3 124918897 124919704 -34680079 + RMER1A Other Other 276 1026 -4 5 1538 1389 87 0 0 chr3 124920257 124920441 -34679342 + Lx LINE L1 6098 6281 -373 5 1538 2137 108 54 6 chr3 124921099 124921452 -34678331 + Lx LINE L1 6273 6642 -12 5 1538 1362 325 99 64 chr3 124921701 124921978 -34677805 - ORR1D-int LTR MaLR -477 893 592 5 1538 3060 19 22 0 chr3 124921978 124922338 -34677445 + L1Md_A LINE L1 6215 6582 0 5 1538 1362 325 99 64 chr3 124922338 124922845 -34676938 - ORR1D-int LTR MaLR -779 591 81 5 1538 205 135 18 55 chr3 124922846 124922901 -34676882 + A-rich Low_complexity Low_complexity 2 54 0 5 1538 205 89 22 22 chr3 124922916 124922962 -34676821 + (CAA)n Simple_repeat Simple_repeat 2 47 0 5 1538 757 258 51 48 chr3 124923009 124923338 -34676445 - ORR1D2 LTR MaLR -1 378 1 5 1538 316 351 89 20 chr3 124923429 124923689 -34676094 - MLT2B1 LTR ERVL -227 293 15 5 1538 322 181 13 39 chr3 124923754 124923909 -34675874 + (TG)n Simple_repeat Simple_repeat 2 152 0 6 1538 184 223 16 64 chr3 124923984 124924171 -34675612 + (TATG)n Simple_repeat Simple_repeat 1 178 0 6 1538 24 0 0 0 chr3 124924654 124924678 -34675105 + AT_rich Low_complexity Low_complexity 1 24 0 6 1538 273 364 35 88 chr3 124925369 124925595 -34674188 + LTR68 LTR ERV1 41 254 -486 6 1538 27 0 0 0 chr3 124926459 124926486 -34673297 + AT_rich Low_complexity Low_complexity 1 27 0 6 1538 22 0 0 0 chr3 124926647 124926669 -34673114 + AT_rich Low_complexity Low_complexity 1 22 0 6 1538 360 0 0 0 chr3 124926785 124926825 -34672958 + (TAA)n Simple_repeat Simple_repeat 2 41 0 6 1538 796 268 13 13 chr3 124927165 124927396 -34672387 - L1_Mur3 LINE L1 -519 5361 5131 6 1538 1355 299 75 15 chr3 124927393 124927936 -34671847 - Lx7 LINE L1 -361 7335 6760 6 1538 917 267 9 22 chr3 124927938 124928168 -34671615 - Lx7 LINE L1 -1137 6559 6333 6 1538 637 217 14 55 chr3 124928169 124928315 -34671468 + B1_Mur4 SINE Alu 3 142 -8 6 1538 294 29 0 0 chr3 124928572 124928607 -34671176 + (TG)n Simple_repeat Simple_repeat 2 36 0 6 1538 2727 116 32 50 chr3 124928649 124929112 -34670671 - Lx3A LINE L1 -29 6952 6498 6 1538 4450 110 30 19 chr3 124929108 124929801 -34669982 + Lx3_Mus LINE L1 5822 6522 -487 6 1538 1689 279 41 72 chr3 124929826 124930791 -34668992 - Lx7 LINE L1 -1604 6092 5158 6 1538 1391 227 186 105 chr3 124930894 124931297 -34668486 - RMER6D LTR ERVK -4 716 355 6 1538 594 41 0 0 chr3 124931297 124931370 -34668413 + (GAATG)n Simple_repeat Simple_repeat 3 75 0 6 1538 1391 227 186 105 chr3 124931370 124931616 -34668167 - RMER6D LTR ERVK -366 354 14 6 1538 333 0 0 0 chr3 124931664 124931701 -34668082 + (TG)n Simple_repeat Simple_repeat 2 38 0 6 1538 2281 233 50 16 chr3 124931702 124932282 -34667501 + Lx9 LINE L1 6339 6938 -706 6 1538 292 368 52 36 chr3 124932351 124932599 -34667184 + MER67D LTR ERV1 235 486 -28 6 1538 198 195 37 0 chr3 124933483 124933565 -34666218 + GA-rich Low_complexity Low_complexity 2 86 0 6 1538 421 302 108 39 chr3 124934296 124934554 -34665229 + L1ME3A LINE L1 5652 5927 -246 6 1538 3966 113 17 3 chr3 124935161 124935737 -34664046 + MT2B2 LTR ERVL 1 584 0 6 1538 1669 197 45 58 chr3 124935813 124936191 -34663592 + ORR1C2 LTR MaLR 1 373 -11 6 1538 554 364 40 79 chr3 124936284 124936451 -34663332 + B4A SINE B4 1 167 -125 6 1538 1590 63 0 0 chr3 124936451 124936657 -34663126 - L1Md_F2 LINE L1 -12 6570 6365 6 1538 554 364 40 79 chr3 124936657 124936793 -34662990 + B4A SINE B4 168 292 0 6 1538 628 335 0 0 chr3 124937039 124937242 -34662541 + B3 SINE B2 5 207 -9 6 1538 243 0 0 0 chr3 124938461 124938488 -34661295 + (A)n Simple_repeat Simple_repeat 1 27 0 6 1538 273 359 8 8 chr3 124939251 124939369 -34660414 + Lx8 LINE L1 6480 6597 -876 6 1538 762 147 0 0 chr3 124939409 124939538 -34660245 + (TA)n Simple_repeat Simple_repeat 1 129 0 6 1538 542 287 61 56 chr3 124939797 124940011 -34659772 + B3 SINE B2 1 215 -1 6 1538 570 123 46 0 chr3 124940041 124940171 -34659612 + (TA)n Simple_repeat Simple_repeat 2 137 0 6 1538 278 61 0 0 chr3 124940225 124940274 -34659509 + L1Md_A LINE L1 6534 6582 0 6 1538 1402 154 15 4 chr3 124940280 124940540 -34659243 + BGLII LTR ERVK 159 421 0 6 1538 2245 241 47 80 chr3 124940545 124941283 -34658500 + RMER6D LTR ERVK 1 714 -6 6 1538 204 40 0 0 chr3 124941754 124941779 -34658004 + (CA)n Simple_repeat Simple_repeat 2 26 0 6 1538 24 0 0 0 chr3 124942035 124942059 -34657724 + AT_rich Low_complexity Low_complexity 1 24 0 6 1538 1207 345 52 29 chr3 124942619 124943248 -34656535 - Lx8 LINE L1 -181 7292 6649 6 1538 636 339 68 25 chr3 124943368 124943767 -34656016 + Lx8 LINE L1 6087 6502 -971 6 1538 340 351 104 35 chr3 124944020 124944280 -34655503 + B4A SINE B4 1 278 -14 6 1538 399 21 0 0 chr3 124944304 124944352 -34655431 + (CA)n Simple_repeat Simple_repeat 1 48 0 6 1538 549 0 0 0 chr3 124944352 124944412 -34655371 + (GA)n Simple_repeat Simple_repeat 2 62 0 6 1538 5203 215 43 10 chr3 124944771 124945942 -34653841 + Lx2B LINE L1 5787 6995 -5 6 1538 3023 69 10 2 chr3 124946156 124946549 -34653234 + MTA_Mm LTR MaLR 1 396 0 6 1538 5861 138 69 19 chr3 124946551 124947633 -34652150 + MTA_Mm-int LTR MaLR 5 1140 -118 6 1538 2560 114 103 0 chr3 124947640 124948068 -34651715 - L1_Mus3 LINE L1 -509 6491 5673 6 1538 2201 47 7 18 chr3 124948068 124948437 -34651346 + L1_Mus1 LINE L1 6281 6567 0 6 1538 354 59 20 0 chr3 124948437 124948488 -34651295 + MTA_Mm-int LTR MaLR 1047 1098 0 6 1538 2830 84 37 0 chr3 124948488 124948870 -34650913 + MTA_Mm LTR MaLR 1 396 0 6 1538 932 248 19 0 chr3 124950007 124950213 -34649570 - B3 SINE B2 -5 211 2 6 1538 517 332 85 14 chr3 124950536 124950747 -34649036 - Lx8 LINE L1 -334 7139 6914 6 1538 331 320 87 48 chr3 124950833 124950902 -34648881 - Lx8 LINE L1 -705 6768 6696 6 1538 362 21 0 21 chr3 124950902 124950950 -34648833 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 6 1538 331 320 87 48 chr3 124950950 124951087 -34648696 - Lx8 LINE L1 -778 6695 6554 6 1538 585 314 170 28 chr3 124951110 124951428 -34648355 - MTD LTR MaLR -39 380 18 6 1538 336 276 73 153 chr3 124951443 124951893 -34647890 - RMER10A LTR ERVL -28 414 1 6 1538 637 298 88 4 chr3 124951934 124952160 -34647623 - Lx8 LINE L1 -934 6539 6295 6 1538 31 26 0 0 chr3 124952273 124952311 -34647472 + AT_rich Low_complexity Low_complexity 1 38 0 6 1538 238 298 36 0 chr3 124952312 124952396 -34647387 + Lx8 LINE L1 6620 6706 -767 6 1538 216 0 0 0 chr3 124952624 124952648 -34647135 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 6 1538 249 299 11 62 chr3 124952749 124952789 -34646994 - Lx8 LINE L1 -6469 1139 1103 6 1538 261 0 0 0 chr3 124952789 124952818 -34646965 + (TTCA)n Simple_repeat Simple_repeat 2 30 0 6 1538 249 299 11 62 chr3 124952818 124952955 -34646828 - Lx8 LINE L1 -6506 1102 971 6 1538 3133 64 0 24 chr3 124952970 124953389 -34646394 - L1Md_F2 LINE L1 -8 6574 6166 6 1538 1294 98 0 0 chr3 124953389 124953563 -34646220 + L1Md_F2 LINE L1 5964 6137 -445 6 1538 22 35 0 0 chr3 124953738 124953767 -34646016 + AT_rich Low_complexity Low_complexity 1 29 0 6 1538 357 82 0 0 chr3 124953767 124953816 -34645967 + (TATG)n Simple_repeat Simple_repeat 4 52 0 6 1538 2296 211 146 29 chr3 124953860 124954519 -34645264 + RMER19A LTR ERVK 1 736 -1 6 1538 252 268 80 30 chr3 124954525 124954625 -34645158 - B3A SINE B2 -89 109 5 6 1538 21 0 0 0 chr3 124956003 124956024 -34643759 + AT_rich Low_complexity Low_complexity 1 21 0 6 1538 2061 118 21 6 chr3 124957483 124957816 -34641967 - Lx2 LINE L1 0 6997 6660 6 1538 21 36 0 0 chr3 124959112 124959140 -34640643 + AT_rich Low_complexity Low_complexity 1 28 0 6 1538 3433 80 4 0 chr3 124959144 124959605 -34640178 + L1_Mus2 LINE L1 6104 6566 0 6 1538 1465 275 30 5 chr3 124959733 124960164 -34639619 - Lx9 LINE L1 -169 7475 7034 6 1538 874 209 0 84 chr3 124960159 124960183 -34639600 + Lx9 LINE L1 6763 6777 -867 6 1538 3786 125 104 31 chr3 124960183 124960934 -34638849 - RMER17D2 LTR ERVK 0 809 4 6 1538 874 209 0 84 chr3 124960934 124961134 -34638649 + Lx9 LINE L1 6778 6968 -676 6 1538 495 307 131 72 chr3 124961407 124961780 -34638003 + Lx9 LINE L1 6993 7394 -250 6 1538 1828 254 22 36 chr3 124961780 124962363 -34637420 + RMER15 LTR ERVL 1 575 0 6 1538 495 307 131 72 chr3 124962363 124962600 -34637183 + Lx9 LINE L1 7395 7638 -6 6 1538 222 105 0 0 chr3 124963197 124963235 -34636548 + (TTTTG)n Simple_repeat Simple_repeat 3 40 0 6 1538 29 47 0 0 chr3 124963764 124963807 -34635976 + AT_rich Low_complexity Low_complexity 1 43 0 6 1538 21 36 0 0 chr3 124963817 124963845 -34635938 + AT_rich Low_complexity Low_complexity 1 28 0 6 1538 21 36 0 0 chr3 124964866 124964894 -34634889 + AT_rich Low_complexity Low_complexity 1 28 0 6 1538 227 281 58 77 chr3 124965174 124965278 -34634505 + PB1D7 SINE Alu 3 104 -16 6 1538 28 48 0 0 chr3 124965655 124965697 -34634086 + AT_rich Low_complexity Low_complexity 1 42 0 6 1538 25 31 0 0 chr3 124967152 124967184 -34632599 + AT_rich Low_complexity Low_complexity 1 32 0 6 1538 3529 54 67 4 chr3 124967850 124968313 -34631470 + L1Md_F2 LINE L1 6090 6581 -1 6 1538 803 147 218 47 chr3 124970251 124970444 -34629339 - URR1A DNA MER1_type 0 226 1 6 1538 195 42 0 0 chr3 124973105 124973129 -34626654 + (TTTG)n Simple_repeat Simple_repeat 3 26 0 6 1538 707 247 0 18 chr3 124973667 124973836 -34625947 - RLTR16 LTR ERVK -105 400 235 6 1538 198 0 0 0 chr3 124974415 124974437 -34625346 + (TG)n Simple_repeat Simple_repeat 1 22 0 6 1538 203 184 0 0 chr3 124975662 124975700 -34624083 + A-rich Low_complexity Low_complexity 1 38 0 6 1538 639 211 52 8 chr3 124976610 124976744 -34623039 + ORR1B1 LTR MaLR 255 394 0 6 1538 6676 221 59 76 chr3 124976744 124977503 -34622280 - Lx7 LINE L1 -1247 6449 5695 6 1538 315 0 0 0 chr3 124977503 124977538 -34622245 + (TTTCC)n Simple_repeat Simple_repeat 1 35 0 6 1538 1253 79 11 0 chr3 124977538 124977716 -34622067 + (TTCCC)n Simple_repeat Simple_repeat 1 180 0 6 1538 4059 86 16 2 chr3 124977716 124978285 -34621498 - L1_Mus3 LINE L1 -3 6635 6059 6 1538 6676 213 43 51 chr3 124978285 124979933 -34619850 - Lx7 LINE L1 -186 5694 4037 6 1538 992 172 70 1 chr3 124979954 124980174 -34619609 - Lx7 LINE L1 -2167 3710 3477 6 1538 3646 216 94 63 chr3 124980181 124980301 -34619482 - Lx7 LINE L1 -3165 2715 2574 6 1538 216 0 0 0 chr3 124980301 124980325 -34619458 + (TTTTG)n Simple_repeat Simple_repeat 1 24 0 6 1538 3646 216 94 63 chr3 124980325 124981162 -34618621 - Lx7 LINE L1 -3307 2573 1749 6 1538 479 17 17 0 chr3 124981162 124981222 -34618561 + (TA)n Simple_repeat Simple_repeat 2 62 0 6 1538 3646 216 94 63 chr3 124981222 124981547 -34618236 - Lx7 LINE L1 -4132 1748 1395 6 1538 1534 202 62 69 chr3 124981543 124981979 -34617804 - Lx7 LINE L1 -6692 1036 604 6 1538 611 269 9 52 chr3 124981946 124982158 -34617625 - Lx7 LINE L1 -7280 448 246 6 1538 650 303 58 22 chr3 124982563 124982789 -34616994 + Lx8 LINE L1 6354 6587 -886 6 1538 445 212 17 0 chr3 124982889 124983007 -34616776 - Lx9 LINE L1 -3 7641 7522 6 1538 272 333 19 39 chr3 124984613 124984716 -34615067 - PB1D10 SINE Alu -7 110 10 6 1538 719 276 11 17 chr3 124984625 124984802 -34614981 - ID_B1 SINE B4 -43 181 6 6 1538 207 69 0 0 chr3 124984994 124985023 -34614760 + (TTTTG)n Simple_repeat Simple_repeat 1 29 0 6 1538 1116 62 7 7 chr3 124985031 124985176 -34614607 - B1_Mus1 SINE Alu -2 146 2 6 1538 336 314 125 17 chr3 124985541 124985855 -34613928 - L1ME3B LINE L1 -335 5905 5550 6 1538 263 285 45 32 chr3 124986216 124986372 -34613411 - L1ME3B LINE L1 -1062 5084 4927 6 1538 321 265 76 38 chr3 124986577 124986734 -34613049 - ORR1E LTR MaLR -38 332 170 6 1538 768 172 21 0 chr3 124986782 124986927 -34612856 + URR1A DNA MER1_type 79 226 0 6 1538 398 279 62 78 chr3 124986927 124987059 -34612724 - ORR1E LTR MaLR -215 144 16 6 1538 264 77 0 0 chr3 124987666 124987705 -34612078 + (CA)n Simple_repeat Simple_repeat 2 40 0 6 1538 225 0 0 0 chr3 124988089 124988114 -34611669 + (A)n Simple_repeat Simple_repeat 1 25 0 6 1538 602 314 39 29 chr3 124988144 124988412 -34611371 + RMER15 LTR ERVL 253 523 -52 6 1538 293 100 20 0 chr3 124988412 124988462 -34611321 + (TG)n Simple_repeat Simple_repeat 1 51 0 6 1538 457 290 62 0 chr3 124989777 124989915 -34609868 + RCHARR1 DNA MER1_type 81 227 -747 7 1538 540 272 71 6 chr3 124989915 124990085 -34609698 + ORR1D1 LTR MaLR 1 181 -193 7 1538 390 220 12 4 chr3 124990085 124990315 -34609468 + CT-rich Low_complexity Low_complexity 1 231 0 7 1538 413 327 88 6 chr3 124990368 124990528 -34609255 - ORR1E-int LTR MaLR -638 732 560 6 1538 468 219 73 32 chr3 124990524 124990647 -34609136 + ORR1D1 LTR MaLR 243 370 -4 7 1538 386 147 80 0 chr3 124990651 124990726 -34609057 + ORR1D1-int LTR MaLR 1 81 -1289 7 1538 508 231 58 0 chr3 124990728 124990901 -34608882 + RCHARR1 DNA MER1_type 725 907 -67 7 1538 21 57 0 0 chr3 124991104 124991139 -34608644 + AT_rich Low_complexity Low_complexity 1 35 0 7 1538 1538 332 57 25 chr3 124991255 124991971 -34607812 - Lx8 LINE L1 -147 7326 6588 7 1538 36 23 0 0 chr3 124993569 124993612 -34606171 + AT_rich Low_complexity Low_complexity 1 43 0 7 1538 426 132 0 0 chr3 124994966 124995042 -34604741 + (GA)n Simple_repeat Simple_repeat 1 76 0 7 1538 331 347 38 70 chr3 124995171 124995329 -34604454 + RSINE1 SINE B4 5 157 -8 7 1538 24 53 0 0 chr3 124995351 124995389 -34604394 + AT_rich Low_complexity Low_complexity 1 38 0 7 1538 441 0 0 0 chr3 124996392 124996441 -34603342 + (TC)n Simple_repeat Simple_repeat 2 50 0 7 1538 393 22 0 0 chr3 124996441 124996486 -34603297 + (TG)n Simple_repeat Simple_repeat 1 46 0 7 1538 21 0 0 0 chr3 124996964 124996985 -34602798 + AT_rich Low_complexity Low_complexity 1 21 0 7 1538 294 29 0 0 chr3 124997129 124997164 -34602619 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 7 1538 1070 87 0 0 chr3 124997164 124997302 -34602481 - B1_Mus1 SINE Alu -9 139 2 7 1538 613 212 223 59 chr3 124997464 124997720 -34602063 - Lx9 LINE L1 -51 7593 7296 7 1538 2195 270 112 18 chr3 124997721 124998445 -34601338 + Lx9 LINE L1 6149 6940 -704 7 1538 634 298 5 25 chr3 124998857 124999060 -34600723 + B3 SINE B2 1 199 -17 7 1538 348 156 33 0 chr3 124999115 124999205 -34600578 + (TCTA)n Simple_repeat Simple_repeat 4 96 0 7 1538 539 112 35 0 chr3 124999248 124999364 -34600419 + (TCTA)n Simple_repeat Simple_repeat 4 123 0 7 1538 344 302 31 23 chr3 125000347 125000476 -34599307 + ID_B1 SINE B4 89 218 -6 1 1538 884 267 162 16 chr3 125000706 125001026 -34598757 - MTD LTR MaLR 0 419 53 2 1538 234 0 0 0 chr3 125001257 125001283 -34598500 + (TG)n Simple_repeat Simple_repeat 2 27 0 3 1538 369 0 0 0 chr3 125001283 125001323 -34598460 + (TA)n Simple_repeat Simple_repeat 2 42 0 4 1538 434 295 25 0 chr3 125001980 125002102 -34597681 - L3 LINE CR1 -519 3970 3846 5 1538 978 107 0 0 chr3 125002658 125002835 -34596948 + (TG)n Simple_repeat Simple_repeat 2 178 0 6 1538 339 44 0 0 chr3 125002858 125002903 -34596880 + (T)n Simple_repeat Simple_repeat 1 45 0 7 1538 358 355 0 32 chr3 125003640 125003765 -34596018 + RMER1B Other Other 19 139 -927 8 1538 499 257 146 35 chr3 125003969 125004195 -34595588 + RMER1C Other Other 578 828 -514 9 1538 524 240 145 59 chr3 125004297 125004518 -34595265 + RMER1C Other Other 1080 1319 -23 9 1538 271 310 24 69 chr3 125004583 125004680 -34595103 + B4A SINE B4 31 123 -169 1 1538 477 0 0 0 chr3 125004933 125004986 -34594797 + (GA)n Simple_repeat Simple_repeat 2 54 0 1 1538 21 57 0 0 chr3 125005034 125005069 -34594714 + AT_rich Low_complexity Low_complexity 1 35 0 1 1538 207 100 0 0 chr3 125005123 125005153 -34594630 + (CA)n Simple_repeat Simple_repeat 1 30 0 1 1538 314 202 101 39 chr3 125006246 125006375 -34593408 - Lx9 LINE L1 -37 7607 7471 1 1538 29 28 0 0 chr3 125006394 125006430 -34593353 + AT_rich Low_complexity Low_complexity 1 36 0 1 1538 792 281 20 5 chr3 125006444 125006644 -34593139 - B3 SINE B2 -8 208 6 1 1538 3425 53 0 11 chr3 125007106 125007542 -34592241 - L1Md_F2 LINE L1 -16 6566 6136 1 1538 1145 88 0 0 chr3 125008869 125009017 -34590766 + B1_Mus1 SINE Alu 1 148 0 1 1538 588 121 0 0 chr3 125009023 125009114 -34590669 + (GAAA)n Simple_repeat Simple_repeat 2 92 0 1 1538 1197 48 7 0 chr3 125009118 125009264 -34590519 + B1_Mm SINE Alu 1 147 0 2 1538 566 243 137 115 chr3 125009268 125009572 -34590211 + MTC LTR MaLR 80 411 -8 2 1538 398 218 109 95 chr3 125009615 125009649 -34590134 + RSINE1 SINE B4 27 55 -110 2 1538 2290 164 13 3 chr3 125009649 125010039 -34589744 + ORR1B1 LTR MaLR 1 394 0 2 1538 398 218 109 95 chr3 125010039 125010141 -34589642 + RSINE1 SINE B4 56 165 0 2 1538 409 165 0 20 chr3 125010160 125010259 -34589524 + (CA)n Simple_repeat Simple_repeat 2 98 0 2 1538 384 59 0 0 chr3 125011590 125011641 -34588142 + (TA)n Simple_repeat Simple_repeat 1 51 0 2 1538 729 329 111 54 chr3 125011941 125012535 -34587248 + L2 LINE L2 2280 2907 -512 2 1538 205 138 0 0 chr3 125012947 125012976 -34586807 + (TCTCTG)n Simple_repeat Simple_repeat 2 30 0 2 1538 1151 88 0 0 chr3 125014494 125014642 -34585141 + B1_Mus1 SINE Alu 1 148 0 2 1538 195 39 0 0 chr3 125014642 125014663 -34585120 + (A)n Simple_repeat Simple_repeat 1 21 0 2 1538 806 305 48 21 chr3 125014673 125014964 -34584819 - MTEa LTR MaLR -74 305 7 3 1538 267 312 24 36 chr3 125015048 125015131 -34584652 - RSINE1 SINE B4 -67 98 17 3 1538 639 296 161 16 chr3 125015213 125015467 -34584316 - ORR1E LTR MaLR -64 295 5 3 1538 235 226 153 12 chr3 125015774 125015859 -34583924 + L1MC5 LINE L1 7311 7407 -554 3 1538 457 289 89 39 chr3 125016341 125016521 -34583262 + B3A SINE B2 4 192 -6 3 1538 333 0 0 0 chr3 125016878 125016915 -34582868 + (TC)n Simple_repeat Simple_repeat 2 38 0 3 1538 565 106 18 0 chr3 125016915 125017027 -34582756 + (TA)n Simple_repeat Simple_repeat 2 116 0 3 1538 456 19 0 0 chr3 125018807 125018860 -34580923 + (CA)n Simple_repeat Simple_repeat 2 54 0 3 1538 396 0 0 0 chr3 125019703 125019747 -34580036 + (GA)n Simple_repeat Simple_repeat 1 44 0 3 1538 280 285 99 25 chr3 125020816 125020978 -34578805 + MER53 DNA hAT 16 189 -4 3 1538 1987 206 50 5 chr3 125021079 125021478 -34578305 - MTC LTR MaLR -4 417 1 4 1538 693 245 59 86 chr3 125021511 125021766 -34578017 - MTD LTR MaLR -161 258 11 4 1538 1071 276 85 85 chr3 125021775 125021933 -34577850 - MTD-int LTR MaLR -4 1254 1088 4 1538 1130 29 0 42 chr3 125021933 125022076 -34577707 + B1_Mm SINE Alu 5 141 -6 4 1538 324 0 0 0 chr3 125022079 125022115 -34577668 + (TAAA)n Simple_repeat Simple_repeat 2 37 0 4 1538 1071 276 85 85 chr3 125022115 125022514 -34577269 - MTD-int LTR MaLR -171 1087 695 4 1538 734 304 188 8 chr3 125022514 125022769 -34577014 + MTD LTR MaLR 1 301 -118 4 1538 1194 212 70 151 chr3 125022785 125022943 -34576840 - MTD LTR MaLR -10 409 276 4 1538 1871 158 3 6 chr3 125022943 125023256 -34576527 + Lx LINE L1 6337 6648 -6 4 1538 1194 212 70 151 chr3 125023256 125023267 -34576516 - MTD LTR MaLR -144 275 275 4 1538 284 0 0 27 chr3 125023267 125023304 -34576479 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 4 1538 1194 212 70 151 chr3 125023304 125023578 -34576205 - MTD LTR MaLR -144 275 1 4 1538 461 302 73 35 chr3 125024725 125025095 -34574688 - L1MA8 LINE L1 -43 6248 5865 4 1538 477 221 0 0 chr3 125025303 125025389 -34574394 + 4.5SRNA scRNA scRNA 7 92 -2 5 1538 254 327 39 19 chr3 125025389 125025404 -34574379 + PB1D9 SINE Alu 8 110 -10 5 1538 714 129 62 31 chr3 125026760 125026888 -34572895 + B1_Mur2 SINE Alu 18 149 0 5 1538 315 146 0 0 chr3 125026912 125026967 -34572816 + (TATG)n Simple_repeat Simple_repeat 2 56 0 5 1538 27 0 0 0 chr3 125027005 125027032 -34572751 + AT_rich Low_complexity Low_complexity 1 27 0 5 1538 1168 273 66 17 chr3 125027112 125027536 -34572247 - Lx6 LINE L1 -567 6893 6460 5 1538 1632 237 56 5 chr3 125027562 125027940 -34571843 + Lx6 LINE L1 7038 7434 -26 5 1538 7864 53 5 1 chr3 125028167 125029149 -34570634 - L1Md_F2 LINE L1 0 6582 5597 5 1538 211 395 35 0 chr3 125029897 125029983 -34569800 - L2a LINE L2 0 3426 3338 5 1538 855 172 161 0 chr3 125030475 125030667 -34569116 - URR1A DNA MER1_type -3 223 1 5 1538 244 384 88 0 chr3 125031526 125031651 -34568132 - L2a LINE L2 -628 2791 2656 5 1538 284 345 146 12 chr3 125031789 125032082 -34567701 + MLT1B LTR MaLR 4 383 -84 6 1538 213 121 0 0 chr3 125032971 125033004 -34566779 + (A)n Simple_repeat Simple_repeat 1 33 0 6 1538 913 219 76 31 chr3 125033382 125033670 -34566113 + Lx4B LINE L1 6753 7053 -5 6 1538 21 0 0 0 chr3 125033670 125033691 -34566092 + AT_rich Low_complexity Low_complexity 1 21 0 6 1538 392 284 8 49 chr3 125033779 125033901 -34565882 - RLTR23 LTR ERV1 0 430 314 6 1538 959 263 23 42 chr3 125034627 125034937 -34564846 + Lx6 LINE L1 7152 7455 -5 6 1538 651 67 0 0 chr3 125035629 125035718 -34564065 + (TTTTC)n Simple_repeat Simple_repeat 2 90 0 6 1538 2582 237 111 59 chr3 125035718 125036576 -34563207 - Lx7 LINE L1 -20 7676 6775 6 1538 2392 276 34 11 chr3 125036571 125037288 -34562495 - Lx7 LINE L1 -1027 6669 5937 6 1538 1752 206 11 3 chr3 125037283 125037639 -34562144 - Lx7 LINE L1 -95 5785 5427 6 1538 180 176 0 0 chr3 125039975 125040009 -34559774 + (TA)n Simple_repeat Simple_repeat 1 34 0 6 1538 25 31 0 0 chr3 125040030 125040062 -34559721 + AT_rich Low_complexity Low_complexity 1 32 0 6 1538 21 36 0 0 chr3 125040292 125040320 -34559463 + AT_rich Low_complexity Low_complexity 1 28 0 7 1538 567 277 51 0 chr3 125040487 125040624 -34559159 + B1_Mur1 SINE Alu 1 144 -5 7 1538 589 260 93 39 chr3 125042048 125042252 -34557531 + B3 SINE B2 1 215 -1 7 1539 26 50 0 0 chr3 125042726 125042766 -34557017 + AT_rich Low_complexity Low_complexity 1 40 0 7 1539 369 0 0 0 chr3 125042778 125042819 -34556964 + (TG)n Simple_repeat Simple_repeat 2 42 0 7 1539 207 0 0 0 chr3 125043410 125043433 -34556350 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 7 1539 29062 71 2 3 chr3 125043459 125048078 -34551705 - L1Md_F2 LINE L1 -2 6580 1969 7 1539 504 0 0 0 chr3 125049119 125049175 -34550608 + (TA)n Simple_repeat Simple_repeat 1 56 0 7 1539 584 279 88 8 chr3 125049930 125050169 -34549614 + RMER15 LTR ERVL 27 284 -291 7 1539 1010 294 63 17 chr3 125050179 125050529 -34549254 + RMER15 LTR ERVL 210 575 0 7 1539 971 286 42 44 chr3 125051369 125051779 -34548004 - Lx9 LINE L1 -173 7471 7063 8 1539 2768 96 19 5 chr3 125051781 125052191 -34547592 - MusHAL1 LINE L1 -731 1981 1566 8 1539 4841 72 45 0 chr3 125052190 125052831 -34546952 + L1_Mus4 LINE L1 5597 6266 -370 8 1539 781 109 36 7 chr3 125052831 125052969 -34546814 + L1_Mus4 LINE L1 6483 6624 -12 8 1539 782 325 112 11 chr3 125052997 125053379 -34546404 - Lx9 LINE L1 -671 6973 6622 8 1539 505 321 6 0 chr3 125053526 125053879 -34545904 + (CA)n Simple_repeat Simple_repeat 1 355 0 8 1539 204 358 13 0 chr3 125053783 125053934 -34545849 + (CATATA)n Simple_repeat Simple_repeat 2 154 0 8 1539 7981 142 16 18 chr3 125054384 125056518 -34543265 + Lx LINE L1 4524 6653 -1 8 1539 535 279 7 45 chr3 125056588 125056742 -34543041 + B1_Mur3 SINE Alu 2 149 0 8 1539 801 297 78 28 chr3 125057355 125057742 -34542041 + L1MA4 LINE L1 5604 6022 -278 8 1539 408 147 0 0 chr3 125058521 125058596 -34541187 + (TA)n Simple_repeat Simple_repeat 2 76 0 8 1539 334 296 83 0 chr3 125058638 125058746 -34541037 - B1F SINE Alu -23 126 10 8 1539 1122 200 71 163 chr3 125060752 125061158 -34538625 + ORR1D1 LTR MaLR 6 374 0 9 1539 3177 273 113 25 chr3 125061158 125062417 -34537366 + ORR1D1-int LTR MaLR 1 1370 0 9 1539 1069 268 48 103 chr3 125062417 125062609 -34537174 + ORR1D1 LTR MaLR 1 170 -214 9 1539 321 27 49 74 chr3 125062609 125062690 -34537093 + (TCTCTG)n Simple_repeat Simple_repeat 6 84 0 9 1539 1069 268 48 103 chr3 125062690 125062896 -34536887 + ORR1D1 LTR MaLR 171 377 -7 9 1539 1651 140 4 19 chr3 125062943 125063212 -34536571 + Lx3A LINE L1 6706 6970 -11 9 1539 24 77 0 0 chr3 125063212 125063264 -34536519 + AT_rich Low_complexity Low_complexity 1 52 0 9 1539 33 0 0 0 chr3 125064171 125064204 -34535579 + AT_rich Low_complexity Low_complexity 1 33 0 9 1539 34 42 0 0 chr3 125064612 125064660 -34535123 + AT_rich Low_complexity Low_complexity 1 48 0 9 1539 387 0 0 0 chr3 125064912 125064955 -34534828 + (TA)n Simple_repeat Simple_repeat 1 43 0 9 1539 261 227 78 22 chr3 125065240 125065330 -34534453 + L1MA4 LINE L1 6078 6172 -128 9 1539 438 386 37 5 chr3 125065412 125065602 -34534181 + B3A SINE B2 1 196 -2 9 1539 765 341 12 19 chr3 125065708 125066028 -34533755 - MLT1C LTR MaLR -149 318 1 9 1539 533 15 15 0 chr3 125066811 125066877 -34532906 + (TA)n Simple_repeat Simple_repeat 1 67 0 1 1539 240 35 0 0 chr3 125067566 125067595 -34532188 + (TTTTG)n Simple_repeat Simple_repeat 4 32 0 1 1539 297 0 0 0 chr3 125067773 125067806 -34531977 + (CA)n Simple_repeat Simple_repeat 2 34 0 1 1539 387 60 0 0 chr3 125067806 125067855 -34531928 + (TA)n Simple_repeat Simple_repeat 2 51 0 1 1539 1044 139 29 19 chr3 125068662 125068852 -34530931 + Lx2B LINE L1 5786 5979 -1021 1 1539 6936 194 42 9 chr3 125068904 125070584 -34529199 - Lx5 LINE L1 -4 7046 5306 1 1539 290 337 78 30 chr3 125070942 125071115 -34528668 + B4 SINE B4 89 270 -22 1 1539 1452 280 111 31 chr3 125071392 125071490 -34528293 + Lx6 LINE L1 6828 6927 -533 1 1539 1137 81 0 7 chr3 125071490 125071639 -34528144 + B1_Mus1 SINE Alu 1 148 0 1 1539 1452 280 111 31 chr3 125071639 125072089 -34527694 + Lx6 LINE L1 6928 7419 -41 1 1539 830 234 16 5 chr3 125072107 125072296 -34527487 + Lx7 LINE L1 6924 7114 -582 1 1539 495 0 0 0 chr3 125072417 125072472 -34527311 + (CA)n Simple_repeat Simple_repeat 2 56 0 1 1539 23 33 0 0 chr3 125073481 125073511 -34526272 + AT_rich Low_complexity Low_complexity 1 30 0 1 1539 21 0 0 0 chr3 125073712 125073733 -34526050 + AT_rich Low_complexity Low_complexity 1 21 0 1 1539 367 321 49 14 chr3 125073805 125074025 -34525758 + B4A SINE B4 2 292 0 1 1539 387 0 0 0 chr3 125074102 125074145 -34525638 + (CA)n Simple_repeat Simple_repeat 1 43 0 1 1539 22 0 0 0 chr3 125074220 125074242 -34525541 + AT_rich Low_complexity Low_complexity 1 22 0 1 1539 268 343 157 54 chr3 125074245 125074747 -34525036 + L2 LINE L2 2018 2571 -848 1 1539 249 352 14 21 chr3 125074961 125075103 -34524680 + Charlie2b DNA MER1_type 2631 2771 -11 1 1539 226 290 15 53 chr3 125076078 125076209 -34523574 - BLACKJACK DNA AcHobo -116 2828 2703 1 1539 284 327 11 51 chr3 125076511 125076688 -34523095 - BLACKJACK DNA AcHobo -313 2631 2462 1 1539 33520 81 13 9 chr3 125077302 125083276 -34516507 - L1Md_F2 LINE L1 -12 6570 575 1 1539 656 299 64 107 chr3 125083283 125083872 -34515911 - BLACKJACK DNA AcHobo -1190 1754 1189 1 1539 2813 64 0 0 chr3 125083872 125084218 -34515565 - ORR1A1 LTR MaLR 0 346 1 1 1539 656 299 64 107 chr3 125084218 125084332 -34515451 - BLACKJACK DNA AcHobo -1756 1188 1081 1 1539 240 350 79 106 chr3 125084628 125084855 -34514928 + B4A SINE B4 4 224 -68 1 1539 1137 76 0 0 chr3 125085516 125085661 -34514122 + B1_Mus2 SINE Alu 2 146 -1 1 1539 695 314 121 36 chr3 125085768 125086181 -34513602 + MT2A LTR ERVL 1 448 -85 1 1539 261 0 0 0 chr3 125086192 125086221 -34513562 + (CA)n Simple_repeat Simple_repeat 2 30 0 1 1539 270 0 0 0 chr3 125086221 125086250 -34513533 + (TA)n Simple_repeat Simple_repeat 2 31 0 1 1539 358 267 85 94 chr3 125086254 125086271 -34513512 - CYRA11_Mm Unknown Y-chromosome -232 385 244 1 1539 940 196 126 0 chr3 125086271 125086470 -34513313 + URR1B DNA MER1_type 2 225 0 1 1539 372 246 44 7 chr3 125087049 125087184 -34512599 + Lx9 LINE L1 7360 7499 -145 1 1539 22 35 0 0 chr3 125088143 125088172 -34511611 + AT_rich Low_complexity Low_complexity 1 29 0 1 1539 29 28 0 0 chr3 125088621 125088657 -34511126 + AT_rich Low_complexity Low_complexity 1 36 0 1 1539 7669 80 1 1 chr3 125088784 125090094 -34509689 + L1_Mus1 LINE L1 5252 6561 -6 1 1539 243 0 0 0 chr3 125090770 125090797 -34508986 + (TTTTTG)n Simple_repeat Simple_repeat 3 29 0 1 1539 377 284 100 43 chr3 125091404 125091544 -34508239 - B1F2 SINE Alu -1 148 1 1 1539 281 385 59 77 chr3 125091671 125091944 -34507839 - B4 SINE B4 -14 278 11 1 1539 609 189 25 117 chr3 125092483 125092645 -34507138 + MTD LTR MaLR 95 241 -178 1 1539 446 163 10 0 chr3 125092737 125092835 -34506948 + (TCTA)n Simple_repeat Simple_repeat 4 102 0 1 1539 30009 11 1 1 chr3 125093159 125096630 -34503153 + L1Md_A LINE L1 2119 5586 -297 1 1539 8626 22 0 0 chr3 125096630 125097625 -34502158 + L1Md_A LINE L1 5587 6581 -1 1 1539 243 133 0 0 chr3 125098100 125098145 -34501638 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 1539 1356 102 14 36 chr3 125099011 125099234 -34500549 + L1_Mus3 LINE L1 6421 6638 0 1 1539 1211 158 26 24 chr3 125099658 125099935 -34499848 - Lx LINE L1 -407 6247 6078 1 1539 363 105 0 0 chr3 125101441 125101498 -34498285 + (CA)n Simple_repeat Simple_repeat 2 58 0 1 1539 264 206 30 15 chr3 125101743 125101876 -34497907 + (CA)n Simple_repeat Simple_repeat 1 135 0 1 1539 304 308 18 36 chr3 125101890 125102055 -34497728 + (TATATG)n Simple_repeat Simple_repeat 6 167 0 1 1539 480 237 6 11 chr3 125102056 125102231 -34497552 + (TA)n Simple_repeat Simple_repeat 1 174 0 1 1539 326 252 18 18 chr3 125102237 125102350 -34497433 + (CATA)n Simple_repeat Simple_repeat 2 114 0 1 1539 372 178 0 0 chr3 125102361 125102434 -34497349 + (TATATG)n Simple_repeat Simple_repeat 2 74 0 1 1539 260 286 0 23 chr3 125102434 125102520 -34497263 + (CA)n Simple_repeat Simple_repeat 2 85 0 1 1539 349 264 12 25 chr3 125104183 125104215 -34495568 + B1_Mur1 SINE Alu 9 149 0 1 1539 324 214 35 35 chr3 125104215 125104302 -34495481 + ID_B1 SINE B4 137 223 -1 1 1539 22 0 0 0 chr3 125105281 125105303 -34494480 + AT_rich Low_complexity Low_complexity 1 22 0 1 1539 210 235 0 0 chr3 125105686 125105737 -34494046 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 1 1539 221 343 14 0 chr3 125105745 125105815 -34493968 + ID2 SINE ID 8 78 -5 1 1539 225 119 0 0 chr3 125106335 125106377 -34493406 + (TA)n Simple_repeat Simple_repeat 1 42 0 1 1539 276 30 0 0 chr3 125106963 125106996 -34492787 + (GGGA)n Simple_repeat Simple_repeat 4 36 0 1 1539 270 81 0 0 chr3 125108079 125108116 -34491667 + (CA)n Simple_repeat Simple_repeat 1 37 0 1 1539 26 0 0 0 chr3 125109000 125109026 -34490757 + AT_rich Low_complexity Low_complexity 1 26 0 1 1539 423 0 0 0 chr3 125111068 125111115 -34488668 + (CCTA)n Simple_repeat Simple_repeat 1 47 0 1 1539 351 0 0 0 chr3 125111115 125111154 -34488629 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 1 1539 26 50 0 0 chr3 125111878 125111918 -34487865 + AT_rich Low_complexity Low_complexity 1 40 0 1 1539 25 31 0 0 chr3 125114113 125114145 -34485638 + AT_rich Low_complexity Low_complexity 1 32 0 1 1539 791 181 29 24 chr3 125115161 125115331 -34484452 + Lx3B LINE L1 6792 6962 -11 1 1539 514 321 24 18 chr3 125115358 125115485 -34484298 + B3A SINE B2 27 153 -45 1 1539 477 0 0 0 chr3 125115485 125115538 -34484245 + (CA)n Simple_repeat Simple_repeat 2 54 0 1 1539 514 322 23 28 chr3 125115538 125115600 -34484183 + B3A SINE B2 152 211 -5 1 1539 5809 137 26 1 chr3 125117975 125118901 -34480882 + Lx2 LINE L1 6049 6997 0 1 1539 1130 82 7 0 chr3 125118910 125119056 -34480727 + B1_Mm SINE Alu 1 147 0 1 1539 201 143 0 45 chr3 125119056 125119091 -34480692 + A-rich Low_complexity Low_complexity 9 42 0 1 1539 7438 81 7 0 chr3 125119102 125120250 -34479533 - L1_Mus1 LINE L1 0 6567 5413 1 1539 1125 128 0 0 chr3 125120880 125121060 -34478723 + (TG)n Simple_repeat Simple_repeat 1 180 0 1 1539 526 284 16 0 chr3 125121107 125121234 -34478549 - RSINE1 SINE B4 -36 129 1 1 1539 1622 52 0 0 chr3 125121249 125121442 -34478341 - B2_Mm1t SINE B2 0 193 1 1 1539 7211 62 13 9 chr3 125122024 125122955 -34476828 + L1_Mus2 LINE L1 5632 6566 0 1 1539 481 288 145 52 chr3 125123113 125124154 -34475629 - L1MC1 LINE L1 -291 6042 4919 1 1539 722 111 0 0 chr3 125124154 125124280 -34475503 - L1_Mus4 LINE L1 -1 6635 6510 1 1539 391 274 110 95 chr3 125124280 125124479 -34475304 - L1MC1 LINE L1 -1228 4918 4697 1 1539 213 229 100 0 chr3 125124517 125124587 -34475196 - L2 LINE L2 -1347 2072 1996 1 1539 2803 35 3 0 chr3 125125649 125125987 -34473796 - L1Md_A LINE L1 -477 6105 5767 1 1539 3710 54 9 0 chr3 125125987 125126448 -34473335 + L1Md_F2 LINE L1 6102 6566 -16 1 1539 312 27 0 0 chr3 125126448 125126485 -34473298 + (TA)n Simple_repeat Simple_repeat 1 37 0 1 1539 984 137 0 0 chr3 125126679 125126825 -34472958 + B1_Mus2 SINE Alu 2 147 0 1 1539 324 0 0 0 chr3 125126825 125126861 -34472922 + (A)n Simple_repeat Simple_repeat 1 36 0 1 1539 261 0 0 0 chr3 125126947 125126976 -34472807 + (TG)n Simple_repeat Simple_repeat 2 30 0 1 1539 309 341 47 0 chr3 125127047 125127176 -34472607 - B1F SINE Alu -6 143 9 1 1539 282 284 21 59 chr3 125127202 125127331 -34472452 - ID4_ SINE ID -28 124 1 1 1539 689 172 7 0 chr3 125127365 125127516 -34472267 + CT-rich Low_complexity Low_complexity 1 152 0 1 1539 217 269 0 0 chr3 125128179 125128231 -34471552 + RSINE1 SINE B4 5 56 -109 1 1539 468 117 0 0 chr3 125128363 125128440 -34471343 + (CA)n Simple_repeat Simple_repeat 2 78 0 1 1539 22 56 0 0 chr3 125128615 125128651 -34471132 + AT_rich Low_complexity Low_complexity 1 36 0 1 1539 1141 62 7 0 chr3 125129964 125130108 -34469675 - B1_Mm SINE Alu -1 146 2 1 1539 216 0 0 0 chr3 125131311 125131335 -34468448 + (TG)n Simple_repeat Simple_repeat 1 24 0 1 1539 405 0 0 0 chr3 125131673 125131718 -34468065 + (TAAA)n Simple_repeat Simple_repeat 3 47 0 1 1539 1257 80 0 11 chr3 125131753 125131929 -34467854 + B2_Mm2 SINE B2 3 176 -19 1 1539 195 42 0 0 chr3 125131929 125131953 -34467830 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 1 1539 3234 111 13 44 chr3 125132081 125132608 -34467175 - Lx3B LINE L1 -756 6217 5707 1 1539 2714 135 32 22 chr3 125132595 125133058 -34466725 + Lx3B LINE L1 6222 6689 -284 1 1539 307 154 108 0 chr3 125133056 125133295 -34466488 + L1_Mus3 LINE L1 6552 6638 0 1 1539 1845 110 58 7 chr3 125133295 125133588 -34466195 + Lx3B LINE L1 6666 6973 0 1 1539 1073 70 6 12 chr3 125134345 125134505 -34465278 - L1Md_F2 LINE L1 0 6582 6424 1 1539 687 25 0 0 chr3 125134577 125134658 -34465125 + (GA)n Simple_repeat Simple_repeat 1 81 0 1 1539 3994 101 3 0 chr3 125135369 125135936 -34463847 + Lx3_Mus LINE L1 6441 7009 0 1 1539 21 0 0 0 chr3 125135936 125135957 -34463826 + AT_rich Low_complexity Low_complexity 1 21 0 1 1539 39 0 0 0 chr3 125136064 125136103 -34463680 + AT_rich Low_complexity Low_complexity 1 39 0 1 1539 23 0 0 0 chr3 125136528 125136551 -34463232 + AT_rich Low_complexity Low_complexity 1 23 0 1 1539 262 264 14 0 chr3 125137050 125137122 -34462661 + (CA)n Simple_repeat Simple_repeat 2 74 0 2 1539 4711 67 24 5 chr3 125138004 125138634 -34461149 + L1_Mus2 LINE L1 5925 6566 0 2 1539 1710 140 32 0 chr3 125138674 125138953 -34460830 + Lx LINE L1 6367 6654 0 2 1539 207 0 0 0 chr3 125139566 125139589 -34460194 + (CA)n Simple_repeat Simple_repeat 2 24 0 2 1539 336 133 0 0 chr3 125141795 125141855 -34457928 + (CA)n Simple_repeat Simple_repeat 2 61 0 2 1539 210 237 0 0 chr3 125141872 125141910 -34457873 + polypurine Low_complexity Low_complexity 5 42 0 2 1539 24 32 0 0 chr3 125142721 125142752 -34457031 + AT_rich Low_complexity Low_complexity 1 31 0 2 1539 201 121 0 0 chr3 125143086 125143119 -34456664 + (CATATA)n Simple_repeat Simple_repeat 4 36 0 2 1539 579 85 0 0 chr3 125143410 125143492 -34456291 + (TA)n Simple_repeat Simple_repeat 1 82 0 2 1539 1977 166 24 16 chr3 125143635 125144008 -34455775 - ORR1C1 LTR MaLR 0 378 3 2 1539 526 326 20 32 chr3 125144883 125145058 -34454725 + MER47A DNA MER2_type 97 268 -98 2 1539 1527 214 107 38 chr3 125145058 125145452 -34454331 - MTC LTR MaLR 0 421 1 2 1539 526 326 20 32 chr3 125145452 125145523 -34454260 + MER47A DNA MER2_type 269 340 -26 2 1539 277 239 0 0 chr3 125145571 125145642 -34454141 + A-rich Low_complexity Low_complexity 1 71 0 2 1539 29 28 0 0 chr3 125145704 125145740 -34454043 + AT_rich Low_complexity Low_complexity 1 36 0 2 1539 1006 106 0 0 chr3 125145812 125145954 -34453829 - B1_Mus1 SINE Alu 0 148 7 2 1539 404 232 0 104 chr3 125145847 125145972 -34453811 - MT2B LTR ERVL -337 264 153 2 1539 1475 318 54 77 chr3 125146628 125147793 -34451990 - Lx8 LINE L1 -820 6653 5489 2 1539 636 291 44 15 chr3 125147869 125148075 -34451708 - B3 SINE B2 -4 212 1 2 1539 502 254 150 37 chr3 125148361 125148618 -34451165 + L1MA5 LINE L1 5937 6220 -80 2 1539 441 0 0 0 chr3 125148618 125148667 -34451116 + (TA)n Simple_repeat Simple_repeat 1 49 0 2 1539 502 254 150 37 chr3 125148667 125148736 -34451047 + L1MA5 LINE L1 6221 6300 0 2 1539 180 77 0 0 chr3 125149219 125149245 -34450538 + (TTTTC)n Simple_repeat Simple_repeat 4 29 0 2 1539 2875 209 106 2 chr3 125149462 125150278 -34449505 - Lx5 LINE L1 -3 7047 6148 2 1539 566 90 90 0 chr3 125150280 125150369 -34449414 - MT2C_Mm LTR ERVL 0 475 379 2 1539 934 86 0 15 chr3 125150343 125150473 -34449310 + B1_Mm SINE Alu 10 137 -10 2 1539 473 243 207 33 chr3 125150509 125150722 -34449061 + RLTR18 LTR ERVK 366 615 -1 2 1539 924 170 6 0 chr3 125151369 125151528 -34448255 - Lx2B LINE L1 -435 6565 6406 2 1539 2385 169 20 16 chr3 125151528 125151967 -34447816 + Lx2B LINE L1 6560 7000 0 2 1539 249 33 0 0 chr3 125153196 125153226 -34446557 + (TTAA)n Simple_repeat Simple_repeat 4 33 0 2 1539 236 30 30 0 chr3 125153627 125153660 -34446123 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 2 1539 2383 193 32 12 chr3 125153680 125154184 -34445599 - RMER5 LTR ERV1 -8 526 13 2 1539 1171 48 0 7 chr3 125154848 125154995 -34444788 + B1_Mus2 SINE Alu 1 146 -1 2 1539 285 75 0 0 chr3 125155000 125155040 -34444743 + (CAAAAA)n Simple_repeat Simple_repeat 3 42 0 2 1539 235 263 91 13 chr3 125155124 125155201 -34444582 - B1_Mm SINE Alu 0 147 65 2 1539 754 259 105 5 chr3 125155387 125155577 -34444206 + B3 SINE B2 6 214 -2 2 1539 312 70 0 0 chr3 125156322 125156365 -34443418 + (TG)n Simple_repeat Simple_repeat 2 44 0 2 1539 241 228 105 38 chr3 125156509 125156614 -34443169 + L1MEg LINE L1 1122 1233 -4886 2 1539 227 114 23 0 chr3 125157791 125157835 -34441948 + (TTTTG)n Simple_repeat Simple_repeat 4 48 0 2 1539 483 63 0 0 chr3 125157857 125157920 -34441863 + (TTCC)n Simple_repeat Simple_repeat 3 65 0 2 1539 3186 8 0 0 chr3 125157923 125158284 -34441499 - L1Md_T LINE L1 0 6582 6222 2 1539 967 16 16 0 chr3 125158284 125158405 -34441378 + (TTTC)n Simple_repeat Simple_repeat 3 125 0 2 1539 24 85 0 0 chr3 125158594 125158653 -34441130 + AT_rich Low_complexity Low_complexity 1 59 0 2 1539 880 112 0 0 chr3 125158780 125158905 -34440878 + B1_Mus1 SINE Alu 3 127 -21 2 1539 300 316 66 0 chr3 125158910 125159046 -34440737 + L1MEg LINE L1 1968 2112 -4113 2 1539 216 149 0 0 chr3 125159350 125159397 -34440386 + (T)n Simple_repeat Simple_repeat 1 47 0 2 1539 13995 55 3 0 chr3 125159484 125161946 -34437837 - L1Md_F2 LINE L1 -12 6570 4105 2 1539 969 83 0 0 chr3 125162053 125162186 -34437597 - B1_Mm SINE Alu -7 140 8 2 1539 460 272 47 81 chr3 125162186 125162201 -34437582 - B4A SINE B4 -72 220 78 2 1539 223 192 19 19 chr3 125163088 125163141 -34436642 + (TG)n Simple_repeat Simple_repeat 1 53 0 2 1539 506 338 20 15 chr3 125163209 125163410 -34436373 - B4A SINE B4 -87 205 4 2 1539 2973 127 21 10 chr3 125163596 125164081 -34435702 + Lx3A LINE L1 6490 6979 -2 2 1539 772 98 0 9 chr3 125164111 125164224 -34435559 - Lx2B LINE L1 -283 6717 6606 2 1539 1168 228 0 59 chr3 125164223 125164530 -34435253 + Lx2B LINE L1 6708 6996 -4 2 1539 315 0 0 0 chr3 125165459 125165494 -34434289 + (TC)n Simple_repeat Simple_repeat 2 36 0 2 1539 207 0 0 0 chr3 125165496 125165519 -34434264 + (TG)n Simple_repeat Simple_repeat 2 24 0 2 1539 421 284 19 10 chr3 125166377 125166480 -34433303 + B4A SINE B4 171 274 -18 2 1539 543 16 0 0 chr3 125166495 125166559 -34433224 + (CA)n Simple_repeat Simple_repeat 2 65 0 2 1539 180 0 0 0 chr3 125167064 125167084 -34432699 + (TTG)n Simple_repeat Simple_repeat 2 21 0 2 1539 8311 36 1 1 chr3 125167093 125168273 -34431510 - L1Md_F2 LINE L1 -14 6568 5389 2 1539 495 0 0 0 chr3 125169249 125169304 -34430479 + (TG)n Simple_repeat Simple_repeat 2 56 0 2 1539 270 0 0 0 chr3 125169755 125169785 -34429998 + (CA)n Simple_repeat Simple_repeat 2 31 0 2 1539 209 157 38 38 chr3 125169786 125169839 -34429944 + (TATATG)n Simple_repeat Simple_repeat 2 54 0 2 1539 384 77 0 0 chr3 125169840 125169892 -34429891 + (TG)n Simple_repeat Simple_repeat 1 52 0 2 1539 547 175 32 0 chr3 125169914 125170068 -34429715 + GA-rich Low_complexity Low_complexity 2 160 0 2 1539 340 135 13 13 chr3 125170627 125170702 -34429081 + (TA)n Simple_repeat Simple_repeat 1 75 0 2 1539 27 0 0 0 chr3 125171467 125171494 -34428289 + AT_rich Low_complexity Low_complexity 1 27 0 2 1539 31 44 0 0 chr3 125172160 125172205 -34427578 + AT_rich Low_complexity Low_complexity 1 45 0 2 1540 457 316 166 15 chr3 125175135 125175611 -34424172 - Charlie2a DNA MER1_type -1875 986 439 2 1540 470 250 59 22 chr3 125176307 125176442 -34423341 + B1F SINE Alu 10 149 0 2 1540 872 278 153 32 chr3 125176829 125177175 -34422608 - MTD LTR MaLR -14 405 18 2 1540 1572 211 4 0 chr3 125177626 125177901 -34421882 + Lx5 LINE L1 6611 6886 -164 2 1540 813 156 7 14 chr3 125178204 125178347 -34421436 + B1_Mur3 SINE Alu 1 142 -7 2 1540 263 284 68 0 chr3 125178459 125178547 -34421236 - L1M5 LINE L1 -718 5522 5429 2 1540 21 0 0 0 chr3 125178685 125178706 -34421077 + AT_rich Low_complexity Low_complexity 1 21 0 2 1540 399 98 0 0 chr3 125178770 125178831 -34420952 + (TG)n Simple_repeat Simple_repeat 2 62 0 2 1540 642 203 42 0 chr3 125179122 125179265 -34420518 - URR1A DNA MER1_type 0 226 78 2 1540 259 170 0 0 chr3 125180249 125180296 -34419487 + U5 snRNA snRNA 2 48 -68 2 1540 1055 288 70 35 chr3 125180838 125181241 -34418542 - MTD LTR MaLR -2 417 1 2 1540 655 262 16 31 chr3 125181423 125181616 -34418167 - B3 SINE B2 -25 191 2 2 1540 232 260 27 91 chr3 125181930 125182040 -34417743 + Charlie13a DNA Charlie 205 307 -1207 2 1540 666 25 0 0 chr3 125182330 125182410 -34417373 + (TC)n Simple_repeat Simple_repeat 2 81 0 2 1540 386 247 175 0 chr3 125182527 125182681 -34417102 - L1MC5 LINE L1 -735 7226 7046 2 1540 264 316 51 26 chr3 125182874 125183030 -34416753 - L1MC5 LINE L1 -1131 6911 6752 2 1540 694 101 0 0 chr3 125183677 125183786 -34415997 - Lx LINE L1 -3 6651 6543 2 1540 1851 83 0 4 chr3 125183786 125184029 -34415754 - Lx LINE L1 -315 6339 6098 2 1540 262 423 0 16 chr3 125184029 125184154 -34415629 + RSINE1 SINE B4 25 147 -18 2 1540 561 55 0 0 chr3 125184154 125184227 -34415556 + (CA)n Simple_repeat Simple_repeat 1 73 0 2 1540 198 0 0 0 chr3 125184999 125185021 -34414762 + (TG)n Simple_repeat Simple_repeat 2 23 0 2 1540 6764 206 28 83 chr3 125185257 125187580 -34412203 - Lx5 LINE L1 -3 7047 4841 2 1540 246 224 106 53 chr3 125187614 125187727 -34412056 + Charlie10 DNA MER1_type 1094 1212 -1610 2 1540 1270 197 58 6 chr3 125187907 125188452 -34411331 - Lx5 LINE L1 -4403 1474 903 2 1540 380 331 7 42 chr3 125189879 125190021 -34409762 + ID_B1 SINE B4 86 222 -2 2 1540 353 264 65 21 chr3 125191074 125191167 -34408616 - RMER10A LTR ERVL -28 414 318 2 1540 266 328 69 23 chr3 125191988 125192119 -34407664 + MLT1B LTR MaLR 248 384 -6 2 1540 180 0 114 0 chr3 125193978 125194013 -34405770 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 2 1540 1451 327 62 18 chr3 125194256 125194928 -34404855 + Lx8 LINE L1 6628 7329 -144 2 1540 4520 108 7 36 chr3 125195118 125195821 -34403962 - Lx2 LINE L1 -1 6996 6314 2 1540 1351 157 0 0 chr3 125195824 125196047 -34403736 + L1_Mur2 LINE L1 5019 5241 -636 2 1540 557 264 130 19 chr3 125196396 125196666 -34403117 - L1MA4A LINE L1 -342 5961 5662 2 1540 372 257 35 28 chr3 125196656 125196800 -34402983 - L1P5 LINE L1 -691 5465 5321 2 1540 28 71 0 0 chr3 125196925 125196981 -34402802 + AT_rich Low_complexity Low_complexity 1 56 0 2 1540 1016 319 103 20 chr3 125197197 125198002 -34401781 - L1MA4A LINE L1 -942 5201 4330 2 1540 549 275 91 8 chr3 125198702 125198966 -34400817 - L1M2 LINE L1 -414 5775 5490 2 1540 287 282 77 60 chr3 125199098 125199215 -34400568 - B1_Mur1 SINE Alu -7 142 24 2 1540 239 309 70 39 chr3 125199137 125199265 -34400518 - MT2B LTR ERVL -337 264 133 2 1540 352 317 89 19 chr3 125199417 125199777 -34400006 - L1M2 LINE L1 -847 5296 4912 2 1540 16627 133 153 16 chr3 125199777 125202591 -34397192 - Lx4A LINE L1 -1100 5958 2580 2 1540 267 31 0 0 chr3 125202591 125202623 -34397160 + (TTA)n Simple_repeat Simple_repeat 2 33 0 2 1540 16627 134 176 17 chr3 125202623 125203233 -34396550 - Lx4A LINE L1 -3298 2579 1996 2 1540 998 177 10 15 chr3 125203241 125203436 -34396347 - Lx4A LINE L1 -6363 723 530 2 1540 1263 81 43 5 chr3 125203631 125203818 -34395965 + L1_Mus1 LINE L1 6374 6567 0 3 1540 275 308 97 53 chr3 125203974 125204026 -34395757 - LTR80A LTR ERVL -261 322 271 3 1540 3399 45 33 9 chr3 125204026 125204452 -34395331 - RLTR10C LTR ERVK 0 436 1 3 1540 275 308 97 53 chr3 125204452 125204646 -34395137 - LTR80A LTR ERVL -313 270 65 3 1540 512 367 60 16 chr3 125204794 125205110 -34394673 - ERVL-B4-int LTR ERVL -1949 3765 3436 3 1540 378 360 17 9 chr3 125205372 125205487 -34394296 - B4 SINE B4 -142 150 35 3 1540 1116 320 43 10 chr3 125205564 125205981 -34393802 - ERVL-B4-int LTR ERVL -2795 2919 2489 3 1540 855 323 73 98 chr3 125206133 125206655 -34393128 - MT2A LTR ERVL 0 533 25 3 1540 509 324 117 41 chr3 125206666 125207181 -34392602 - ERVL-B4-int LTR ERVL -3881 1833 1280 3 1540 252 200 0 0 chr3 125207598 125207658 -34392125 + GA-rich Low_complexity Low_complexity 1 60 0 3 1540 962 333 45 51 chr3 125207678 125208384 -34391399 - ERVL-B4-int LTR ERVL -5011 703 2 3 1540 318 255 18 64 chr3 125208457 125208566 -34391217 - MLT2B4 LTR ERVL -180 376 273 3 1540 354 221 116 0 chr3 125208643 125208738 -34391045 - MLT2B4 LTR ERVL -449 107 2 3 1540 510 276 32 13 chr3 125208738 125208896 -34390887 + Lx9 LINE L1 7308 7468 -176 3 1540 348 94 0 0 chr3 125208911 125208964 -34390819 + (TC)n Simple_repeat Simple_repeat 2 54 0 3 1540 321 26 0 0 chr3 125208993 125209031 -34390752 + (GGGAGA)n Simple_repeat Simple_repeat 5 42 0 3 1540 1131 197 128 18 chr3 125209048 125209322 -34390461 + RMER12 LTR ERVK 37 340 -982 3 1540 305 155 67 67 chr3 125209331 125209421 -34390362 - Lx9 LINE L1 -97 7547 7458 3 1540 3564 220 50 52 chr3 125209421 125210404 -34389379 + RMER12 LTR ERVK 307 1807 -41 3 1540 417 230 0 0 chr3 125210433 125210533 -34389250 + (TG)n Simple_repeat Simple_repeat 1 100 0 3 1540 3221 43 5 5 chr3 125210538 125210934 -34388849 + MTA_Mm LTR MaLR 1 396 0 3 1540 8683 51 13 0 chr3 125210934 125212018 -34387765 + MTA_Mm-int LTR MaLR 1 1098 0 3 1540 3072 36 8 3 chr3 125212018 125212405 -34387378 + MTA_Mm LTR MaLR 1 389 -7 3 1540 315 0 0 0 chr3 125212411 125212446 -34387337 + (CA)n Simple_repeat Simple_repeat 2 36 0 3 1540 207 0 0 0 chr3 125212452 125212475 -34387308 + (TG)n Simple_repeat Simple_repeat 2 24 0 3 1540 266 211 39 13 chr3 125212508 125212585 -34387198 + Lx9 LINE L1 7410 7488 -156 3 1540 378 179 36 0 chr3 125212609 125212693 -34387090 + Lx9 LINE L1 7548 7634 -10 3 1540 763 233 0 14 chr3 125213434 125213582 -34386201 + B1_Mur2 SINE Alu 1 146 -3 3 1540 5138 63 0 1 chr3 125213653 125214307 -34385476 + L1_Mus1 LINE L1 5915 6567 0 3 1540 26 0 0 0 chr3 125215204 125215230 -34384553 + AT_rich Low_complexity Low_complexity 1 26 0 3 1540 2735 64 0 40 chr3 125215304 125215680 -34384103 - L1_Mus2 LINE L1 0 6566 6206 3 1540 3065 56 8 3 chr3 125215680 125216061 -34383722 + L1_Mus2 LINE L1 5783 6166 -400 3 1540 22 0 0 0 chr3 125216068 125216090 -34383693 + AT_rich Low_complexity Low_complexity 1 22 0 3 1540 32 67 0 0 chr3 125216269 125216329 -34383454 + AT_rich Low_complexity Low_complexity 1 60 0 3 1540 243 0 0 0 chr3 125217609 125217636 -34382147 + (T)n Simple_repeat Simple_repeat 1 27 0 3 1540 3722 55 15 0 chr3 125217641 125218133 -34381650 + L1_Mus3 LINE L1 6153 6638 0 3 1540 26 0 0 0 chr3 125218227 125218253 -34381530 + AT_rich Low_complexity Low_complexity 1 26 0 3 1540 23 68 0 0 chr3 125218462 125218506 -34381277 + AT_rich Low_complexity Low_complexity 1 44 0 3 1540 965 124 0 6 chr3 125219951 125220113 -34379670 + (GAAA)n Simple_repeat Simple_repeat 2 162 0 3 1540 181 267 51 51 chr3 125220399 125220478 -34379305 + MIR SINE MIR 111 189 -73 3 1540 1186 27 13 0 chr3 125220884 125221034 -34378749 + (TAGA)n Simple_repeat Simple_repeat 1 152 0 3 1540 228 149 0 0 chr3 125222572 125222619 -34377164 + (TTTC)n Simple_repeat Simple_repeat 2 48 0 3 1540 23 0 0 0 chr3 125223997 125224020 -34375763 + AT_rich Low_complexity Low_complexity 1 23 0 3 1540 22 0 0 0 chr3 125224207 125224229 -34375554 + AT_rich Low_complexity Low_complexity 1 22 0 3 1540 192 402 46 0 chr3 125224292 125224379 -34375404 - L2a LINE L2 -36 3390 3300 3 1540 414 0 0 0 chr3 125225429 125225475 -34374308 + (TG)n Simple_repeat Simple_repeat 1 46 0 3 1540 1533 176 124 17 chr3 125225475 125225822 -34373961 + MTB_Mm LTR MaLR 24 407 0 3 1540 434 303 41 83 chr3 125225822 125225991 -34373792 - RSINE1 SINE B4 -1 164 3 3 1540 302 317 38 9 chr3 125226317 125226422 -34373361 + PB1D7 SINE Alu 1 108 -12 3 1540 452 181 39 8 chr3 125227483 125227611 -34372172 + Lx9 LINE L1 7513 7644 0 3 1540 1655 94 8 16 chr3 125227704 125227953 -34371830 - L1_Mus3 LINE L1 -5 6633 6387 3 1540 458 325 38 11 chr3 125227953 125228161 -34371622 - RLTR18B LTR ERVK -12 604 291 3 1540 321 240 10 40 chr3 125228165 125228265 -34371518 - RLTR9E LTR ERVK 0 409 313 3 1540 1427 200 40 117 chr3 125228682 125229084 -34370699 - ORR1B1 LTR MaLR -8 386 16 3 1540 212 338 0 12 chr3 125230948 125231029 -34368754 + GA-rich Low_complexity Low_complexity 2 81 0 3 1540 23 68 0 0 chr3 125231064 125231108 -34368675 + AT_rich Low_complexity Low_complexity 1 44 0 3 1540 34 42 0 0 chr3 125231271 125231319 -34368464 + AT_rich Low_complexity Low_complexity 1 48 0 3 1540 4958 55 8 12 chr3 125231378 125232023 -34367760 - L1Md_F2 LINE L1 -8 6574 5933 3 1540 933 293 33 73 chr3 125232631 125232999 -34366784 + ORR1E LTR MaLR 1 353 -6 3 1540 494 385 51 17 chr3 125233036 125233446 -34366337 + Charlie7 DNA MER1_type 40 463 -2149 3 1540 435 38 0 0 chr3 125234052 125234105 -34365678 + (CA)n Simple_repeat Simple_repeat 1 53 0 3 1540 180 111 0 0 chr3 125234116 125234143 -34365640 + (GGGAGA)n Simple_repeat Simple_repeat 5 31 0 3 1540 1189 297 29 63 chr3 125234302 125234984 -34364799 + L1MC2 LINE L1 5565 6223 -121 3 1540 744 12 0 0 chr3 125235039 125235124 -34364659 + (TC)n Simple_repeat Simple_repeat 2 86 0 3 1540 338 300 129 22 chr3 125235171 125235403 -34364380 + L1MC3 LINE L1 7485 7741 -44 3 1540 258 254 143 0 chr3 125235453 125235516 -34364267 + ID4_ SINE ID 10 81 -2 3 1540 200 35 35 0 chr3 125235586 125235615 -34364168 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 3 1540 432 0 0 0 chr3 125235841 125235889 -34363894 + (TA)n Simple_repeat Simple_repeat 2 49 0 3 1540 222 322 78 9 chr3 125237888 125238004 -34361779 + L2a LINE L2 3261 3384 -42 3 1540 22 70 0 0 chr3 125238073 125238116 -34361667 + AT_rich Low_complexity Low_complexity 1 43 0 3 1540 37 62 0 0 chr3 125238776 125238841 -34360942 + AT_rich Low_complexity Low_complexity 1 65 0 3 1540 677 30 10 0 chr3 125239270 125239370 -34360413 - L1Md_F3 LINE L1 -14 6570 6470 3 1540 251 271 149 25 chr3 125239603 125239724 -34360059 + B1F SINE Alu 13 148 -1 3 1540 240 318 15 0 chr3 125240569 125240635 -34359148 - B3A SINE B2 -122 76 10 3 1540 1079 75 0 0 chr3 125240751 125240885 -34358898 + B1_Mus1 SINE Alu 1 134 -14 3 1540 274 23 23 23 chr3 125240886 125240930 -34358853 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 3 1540 702 85 0 0 chr3 125241068 125241174 -34358609 - L1_Mus2 LINE L1 0 6566 6461 3 1540 202 115 75 19 chr3 125241308 125241361 -34358422 + T-rich Low_complexity Low_complexity 3 58 0 3 1540 269 254 81 73 chr3 125243706 125243829 -34355954 + ORR1D1 LTR MaLR 229 352 -22 3 1540 6947 82 27 1 chr3 125244008 125244972 -34354811 - L1_Mus3 LINE L1 -3 6635 5647 3 1540 1033 154 0 6 chr3 125244968 125245138 -34354645 + L1_Mm LINE L1 4790 4958 -925 3 1540 6802 116 22 5 chr3 125245131 125246219 -34353564 - L1_Mm LINE L1 -1077 4806 3700 3 1540 16873 71 59 4 chr3 125246214 125249346 -34350437 - L1Md_F2 LINE L1 -1 6581 3254 3 1540 3827 120 3 5 chr3 125249354 125249933 -34349850 - L1_Mus3 LINE L1 0 6638 6061 3 1540 3414 57 39 0 chr3 125249931 125250371 -34349412 + L1_Mus1 LINE L1 6111 6567 0 3 1540 246 234 0 0 chr3 125250374 125250438 -34349345 + A-rich Low_complexity Low_complexity 1 64 0 3 1540 225 329 14 0 chr3 125250899 125250969 -34348814 + PB1D10 SINE Alu 1 71 -46 3 1540 198 0 0 0 chr3 125251001 125251023 -34348760 + (TAAA)n Simple_repeat Simple_repeat 4 25 0 3 1540 259 184 0 0 chr3 125251030 125251079 -34348704 + Lx9 LINE L1 7330 7378 -266 3 1540 282 141 174 0 chr3 125251118 125251210 -34348573 + Lx9 LINE L1 7468 7575 -69 3 1540 376 250 120 0 chr3 125251292 125251400 -34348383 + Lx7 LINE L1 588 708 -7020 3 1540 10805 216 80 19 chr3 125251402 125254913 -34344870 + Lx7 LINE L1 2700 6426 -1270 3 1540 8153 49 0 1 chr3 125255673 125257117 -34342666 - L1Md_F2 LINE L1 -1 6581 5139 3 1540 200 34 0 33 chr3 125258560 125258590 -34341193 + (TTCTCC)n Simple_repeat Simple_repeat 6 34 0 3 1540 441 0 0 0 chr3 125258796 125258845 -34340938 + (TG)n Simple_repeat Simple_repeat 2 50 0 3 1540 13723 143 19 21 chr3 125258860 125261516 -34338267 - Lx2B LINE L1 0 7000 4381 3 1540 1534 46 0 0 chr3 125261516 125261710 -34338073 - L1Md_A LINE L1 0 6582 6389 3 1540 13723 159 15 40 chr3 125261710 125262885 -34336898 - Lx2B LINE L1 -1506 4380 3211 3 1540 546 227 62 26 chr3 125262970 125263083 -34336700 + B1_Mur4 SINE Alu 10 126 -24 3 1540 220 310 14 0 chr3 125263188 125263259 -34336524 + CT-rich Low_complexity Low_complexity 2 73 0 3 1540 1589 26 16 5 chr3 125265947 125266138 -34333645 - B2_Mm1a SINE B2 0 193 1 3 1540 1140 69 7 0 chr3 125266327 125266472 -34333311 + B1_Mus2 SINE Alu 1 146 -1 3 1540 344 329 52 47 chr3 125267638 125267853 -34331930 + MIR SINE MIR 5 217 -51 3 1540 39 0 0 0 chr3 125268191 125268230 -34331553 + AT_rich Low_complexity Low_complexity 1 39 0 3 1540 249 378 79 39 chr3 125269586 125269798 -34329985 - MIRb SINE MIR -24 244 19 3 1540 399 41 0 0 chr3 125270392 125270441 -34329342 + (TA)n Simple_repeat Simple_repeat 1 49 0 3 1540 288 0 0 0 chr3 125270441 125270472 -34329311 + (GA)n Simple_repeat Simple_repeat 2 33 0 3 1540 3942 89 16 2 chr3 125270746 125271306 -34328477 + L1_Mus2 LINE L1 5998 6565 -1 3 1540 5520 129 13 2 chr3 125271355 125271783 -34328000 - L1_Mm LINE L1 -212 5671 5245 3 1540 396 0 0 0 chr3 125271783 125271827 -34327956 + (TA)n Simple_repeat Simple_repeat 2 45 0 3 1540 5520 129 13 2 chr3 125271827 125272271 -34327512 - L1_Mm LINE L1 -639 5244 4791 3 1540 6014 81 93 50 chr3 125272267 125273217 -34326566 + L1_Mus3 LINE L1 5647 6637 -1 3 1540 827 93 7 0 chr3 125273317 125273457 -34326326 + (TA)n Simple_repeat Simple_repeat 1 141 0 3 1540 8871 15 0 0 chr3 125273865 125275276 -34324507 - L1Md_T LINE L1 0 6582 5172 3 1540 9870 23 0 0 chr3 125275267 125276424 -34323359 + L1Md_T LINE L1 3989 5145 -738 3 1540 866 131 0 7 chr3 125276742 125276888 -34322895 + (GGGA)n Simple_repeat Simple_repeat 4 148 0 3 1540 495 0 0 0 chr3 125277187 125277242 -34322541 + (TG)n Simple_repeat Simple_repeat 2 56 0 4 1540 982 282 50 34 chr3 125277246 125277569 -34322214 - Lx6 LINE L1 -48 7412 7085 4 1540 325 301 137 11 chr3 125277595 125277770 -34322013 + Cheshire DNA MER1_type 79 275 -2145 4 1540 954 26 0 0 chr3 125278327 125278440 -34321343 + (TC)n Simple_repeat Simple_repeat 1 113 0 4 1540 441 0 0 0 chr3 125278440 125278488 -34321295 + (CA)n Simple_repeat Simple_repeat 1 49 0 4 1540 184 262 0 0 chr3 125279449 125279491 -34320292 + MIR SINE MIR 94 135 -127 4 1540 203 304 14 14 chr3 125279558 125279628 -34320155 + MIR3 SINE MIR 129 198 -10 4 1540 640 296 70 11 chr3 125280975 125281248 -34318535 + B4A SINE B4 4 292 0 4 1540 396 0 0 0 chr3 125281268 125281312 -34318471 + (CA)n Simple_repeat Simple_repeat 2 45 0 4 1540 505 286 48 35 chr3 125281527 125281672 -34318111 + RSINE1 SINE B4 11 157 -8 4 1540 263 368 104 45 chr3 125282368 125282789 -34316994 - MLT1F2 LTR MaLR -59 501 56 4 1540 344 299 87 33 chr3 125283266 125283735 -34316048 - L1MB7 LINE L1 -218 6826 6317 4 1540 458 189 273 62 chr3 125283769 125283872 -34315911 - Lx9 LINE L1 -1 7643 7519 4 1540 207 69 0 0 chr3 125283872 125283901 -34315882 + (TG)n Simple_repeat Simple_repeat 2 30 0 4 1540 458 189 273 62 chr3 125283901 125284039 -34315744 - Lx9 LINE L1 -126 7518 7351 4 1540 646 322 82 11 chr3 125284223 125284603 -34315180 - L1MB7 LINE L1 -1957 5049 4643 4 1540 409 263 100 28 chr3 125284945 125285195 -34314588 - L1MB7 LINE L1 -2533 4473 4206 4 1540 21 0 0 0 chr3 125285204 125285225 -34314558 + AT_rich Low_complexity Low_complexity 1 21 0 4 1540 286 198 139 0 chr3 125285548 125285634 -34314149 - L1MB7 LINE L1 -3114 3892 3795 4 1540 1357 276 7 49 chr3 125285669 125286076 -34313707 - Lx5 LINE L1 -4 7046 6657 4 1540 260 268 117 7 chr3 125286098 125286252 -34313531 - L1MB7 LINE L1 -4204 3130 2960 4 1540 420 318 34 15 chr3 125286381 125286585 -34313198 - L1MB7 LINE L1 -4562 2772 2565 4 1540 526 314 122 49 chr3 125286636 125287767 -34312016 - L1MB7 LINE L1 -4585 2517 1191 4 1540 229 385 84 38 chr3 125287968 125288313 -34311470 - L1MB7 LINE L1 -6430 904 544 4 1540 248 342 66 16 chr3 125288391 125288513 -34311270 - L1MB7 LINE L1 -6968 366 239 4 1540 250 159 14 28 chr3 125290224 125290295 -34309488 + (TTATA)n Simple_repeat Simple_repeat 5 74 0 4 1540 802 176 0 14 chr3 125290309 125290453 -34309330 + B1_Mur4 SINE Alu 2 143 -7 4 1540 228 324 14 0 chr3 125290677 125290748 -34309035 + ID4 SINE ID 2 73 -10 4 1540 518 363 77 6 chr3 125292089 125292438 -34307345 - MTE2b LTR MaLR -2 377 4 4 1540 451 304 0 17 chr3 125292623 125292740 -34307043 + PB1D10 SINE Alu 1 115 -2 4 1540 967 153 9 86 chr3 125293148 125293369 -34306414 - Lx LINE L1 -10 6644 6441 4 1540 381 264 82 8 chr3 125293517 125293639 -34306144 + B1_Mur4 SINE Alu 5 135 -15 4 1540 345 100 0 0 chr3 125293664 125293714 -34306069 + (TGG)n Simple_repeat Simple_repeat 1 50 0 4 1540 180 0 0 0 chr3 125294769 125294789 -34304994 + (A)n Simple_repeat Simple_repeat 1 20 0 4 1540 877 278 47 47 chr3 125296497 125296795 -34302988 - MTD LTR MaLR -5 414 117 4 1540 2525 259 74 66 chr3 125296770 125297674 -34302109 - MTD-int LTR MaLR -347 911 1 4 1540 239 185 37 0 chr3 125297674 125297728 -34302055 - MTD LTR MaLR 0 419 364 4 1540 1088 68 0 52 chr3 125297729 125297884 -34301899 + B1_Mm SINE Alu 1 147 0 4 1540 279 71 0 0 chr3 125297884 125297926 -34301857 + (A)n Simple_repeat Simple_repeat 1 42 0 4 1540 605 208 114 42 chr3 125297929 125298095 -34301688 - MTD LTR MaLR -47 372 195 4 1540 1539 216 28 3 chr3 125298823 125299148 -34300635 + MTC LTR MaLR 1 333 -88 4 1540 304 258 250 30 chr3 125299383 125299515 -34300268 - B3A SINE B2 -35 163 3 4 1540 1770 172 35 41 chr3 125299765 125300134 -34299649 - ORR1B2 LTR MaLR 0 367 1 4 1540 4047 238 81 14 chr3 125300939 125301914 -34297869 - Lx5 LINE L1 -5 7045 6006 4 1540 2060 185 15 9 chr3 125301914 125302406 -34297377 + Lx5 LINE L1 5482 5987 -1063 4 1540 404 256 33 0 chr3 125302467 125302557 -34297226 + B3 SINE B2 6 98 -118 4 1540 576 29 0 0 chr3 125302981 125303051 -34296732 + (CA)n Simple_repeat Simple_repeat 2 71 0 4 1540 265 387 77 34 chr3 125303060 125303293 -34296490 + L2 LINE L2 2636 2878 -541 4 1540 486 108 0 0 chr3 125303491 125303574 -34296209 + (TTGG)n Simple_repeat Simple_repeat 4 86 0 4 1540 1013 110 0 0 chr3 125303574 125303720 -34296063 - B1_Mm SINE Alu -1 146 1 4 1540 408 245 163 14 chr3 125303819 125303960 -34295823 + L2a LINE L2 3211 3372 -54 4 1541 764 302 13 10 chr3 125305595 125305730 -34294053 - Lx9 LINE L1 -9 7635 7458 4 1541 609 27 0 0 chr3 125305730 125305805 -34293978 + (TAGA)n Simple_repeat Simple_repeat 2 76 0 4 1541 764 245 80 22 chr3 125305805 125306007 -34293776 - Lx9 LINE L1 -187 7457 7238 4 1541 762 250 101 24 chr3 125306027 125306314 -34293469 + Lx9 LINE L1 6139 6447 -1197 4 1541 22 0 0 0 chr3 125306444 125306466 -34293317 + AT_rich Low_complexity Low_complexity 1 22 0 4 1541 192 308 45 30 chr3 125306837 125306904 -34292879 - MIR SINE MIR -121 141 74 4 1541 309 362 51 0 chr3 125307587 125307725 -34292058 - B1F2 SINE Alu -2 147 3 4 1541 378 333 18 0 chr3 125307612 125307726 -34292057 - ID_B1 SINE B4 -26 198 83 4 1541 291 54 0 0 chr3 125307904 125307941 -34291842 + (TA)n Simple_repeat Simple_repeat 1 37 0 4 1541 30 0 0 0 chr3 125308007 125308037 -34291746 + AT_rich Low_complexity Low_complexity 1 30 0 4 1541 272 175 16 0 chr3 125310445 125310508 -34289275 + GA-rich Low_complexity Low_complexity 4 67 0 4 1541 254 274 103 59 chr3 125310988 125311124 -34288659 - RMER12 LTR ERVK -669 653 512 4 1541 498 33 0 0 chr3 125311542 125311602 -34288181 + (CA)n Simple_repeat Simple_repeat 2 61 0 4 1541 1247 118 0 14 chr3 125314614 125314821 -34284962 + L1Md_F2 LINE L1 6373 6576 -6 4 1541 395 258 161 0 chr3 125314831 125314955 -34284828 - B1F2 SINE Alu -5 144 1 4 1541 733 302 61 49 chr3 125315052 125315525 -34284258 - L1M3 LINE L1 -2097 4043 3565 4 1541 2924 220 76 22 chr3 125315586 125316353 -34283430 - Lx9 LINE L1 -6 7638 6831 4 1541 822 275 5 0 chr3 125316359 125316566 -34283217 - B3 SINE B2 -8 208 1 4 1541 619 286 107 27 chr3 125316566 125317041 -34282742 - L1M3 LINE L1 -2636 3504 2992 4 1541 1368 229 28 28 chr3 125318902 125319298 -34280485 + L1_Mur3 LINE L1 2462 2857 -3023 4 1541 782 234 12 99 chr3 125319581 125319823 -34279960 - Lx9 LINE L1 -389 7255 7035 4 1541 496 171 291 6 chr3 125319824 125320006 -34279777 + Lx9 LINE L1 7326 7559 -85 4 1541 26 0 0 0 chr3 125320014 125320040 -34279743 + AT_rich Low_complexity Low_complexity 1 26 0 4 1541 29 47 0 0 chr3 125320147 125320190 -34279593 + AT_rich Low_complexity Low_complexity 1 43 0 4 1541 765 104 42 0 chr3 125320192 125320336 -34279447 - L1_Mus4 LINE L1 -6 6630 6481 4 1541 718 256 74 21 chr3 125320375 125320692 -34279091 + L1_Mur3 LINE L1 3107 3434 -2446 4 1541 300 111 0 0 chr3 125320692 125320737 -34279046 + (TG)n Simple_repeat Simple_repeat 2 46 0 4 1541 460 279 59 112 chr3 125320737 125320891 -34278892 + L1_Mur3 LINE L1 3434 3556 -358 4 1541 540 312 19 63 chr3 125322015 125322220 -34277563 - B3A SINE B2 -1 197 2 4 1541 416 287 60 48 chr3 125326603 125326852 -34272931 + B4A SINE B4 40 291 -1 4 1541 603 27 0 0 chr3 125327457 125327530 -34272253 + (TG)n Simple_repeat Simple_repeat 2 74 0 4 1541 191 239 0 15 chr3 125328340 125328408 -34271375 + GA-rich Low_complexity Low_complexity 2 68 0 4 1541 23 33 0 0 chr3 125328708 125328738 -34271045 + AT_rich Low_complexity Low_complexity 1 30 0 4 1541 262 272 9 104 chr3 125330117 125330232 -34269551 + MT2B LTR ERVL 155 258 -343 4 1541 715 222 7 0 chr3 125330140 125330275 -34269508 + B1_Mus1 SINE Alu 13 148 0 4 1541 29 0 0 0 chr3 125330275 125330304 -34269479 + AT_rich Low_complexity Low_complexity 1 29 0 4 1541 953 227 9 18 chr3 125331314 125331538 -34268245 - L1_Rod LINE L1 -59 5788 5567 4 1541 745 274 149 24 chr3 125331901 125332230 -34267553 + ORR1D2 LTR MaLR 1 370 0 4 1541 289 151 10 41 chr3 125332967 125333010 -34266773 + polypyrimidine Low_complexity Low_complexity 58 96 0 4 1541 1022 73 0 43 chr3 125333010 125333196 -34266587 + (TTC)n Simple_repeat Simple_repeat 2 179 0 4 1541 289 151 10 41 chr3 125333196 125333249 -34266534 + CT-rich Low_complexity Low_complexity 4 57 0 4 1541 22 56 0 0 chr3 125333485 125333521 -34266262 + AT_rich Low_complexity Low_complexity 1 36 0 4 1541 195 42 0 0 chr3 125333650 125333674 -34266109 + (TC)n Simple_repeat Simple_repeat 1 24 0 4 1541 186 103 0 0 chr3 125333676 125333705 -34266078 + (TG)n Simple_repeat Simple_repeat 2 30 0 4 1541 339 25 0 0 chr3 125333706 125333746 -34266037 + (TA)n Simple_repeat Simple_repeat 2 41 0 4 1541 299 265 251 22 chr3 125333775 125334006 -34265777 - B4A SINE B4 -6 286 3 4 1541 26 30 0 0 chr3 125334199 125334232 -34265551 + AT_rich Low_complexity Low_complexity 1 33 0 4 1541 221 119 24 0 chr3 125334284 125334326 -34265457 + (GAAA)n Simple_repeat Simple_repeat 3 45 0 4 1541 1102 93 11 11 chr3 125334336 125334510 -34265273 + (GGGAA)n Simple_repeat Simple_repeat 3 176 0 4 1541 252 0 0 0 chr3 125334510 125334537 -34265246 + (GAAAA)n Simple_repeat Simple_repeat 1 28 0 4 1541 269 368 28 0 chr3 125334989 125335095 -34264688 + PB1D10 SINE Alu 1 109 -8 4 1541 303 323 30 10 chr3 125335022 125335122 -34264661 + ID_B1 SINE B4 116 217 -7 4 1541 7540 85 8 0 chr3 125335773 125337231 -34262552 + L1_Mus1 LINE L1 5093 6563 -4 4 1541 29 78 0 0 chr3 125337578 125337642 -34262141 + AT_rich Low_complexity Low_complexity 1 64 0 4 1541 8505 29 3 0 chr3 125337643 125338634 -34261149 - L1Md_F2 LINE L1 -2 6580 5587 4 1541 315 333 0 0 chr3 125338735 125338810 -34260973 + ID4_ SINE ID 6 80 -3 4 1541 23 33 0 0 chr3 125339614 125339644 -34260139 + AT_rich Low_complexity Low_complexity 1 30 0 4 1541 215 362 108 28 chr3 125340178 125340502 -34259281 - L2 LINE L2 -777 2642 2293 4 1541 279 354 122 7 chr3 125341808 125341956 -34257827 - RSINE1 SINE B4 0 165 1 4 1541 911 336 75 14 chr3 125342158 125342599 -34257184 - Lx8 LINE L1 -212 7261 6794 4 1541 288 253 21 10 chr3 125342595 125342691 -34257092 - L1_Mur3 LINE L1 -3515 2365 2269 4 1541 2390 275 58 48 chr3 125342691 125343574 -34256209 - ORR1D2-int LTR MaLR -520 850 3 4 1541 513 149 193 24 chr3 125343575 125343705 -34256078 - ORR1D2 LTR MaLR 0 374 204 4 1541 1071 268 60 39 chr3 125344291 125344676 -34255107 - Lx6 LINE L1 0 7460 7068 4 1541 245 254 0 82 chr3 125344654 125344727 -34255056 - Lx5 LINE L1 -505 6545 6479 4 1541 471 158 0 0 chr3 125344870 125344946 -34254837 + Lx4A LINE L1 6684 6759 -299 4 1541 21 0 0 0 chr3 125345878 125345899 -34253884 + AT_rich Low_complexity Low_complexity 1 21 0 4 1541 22 0 0 0 chr3 125346753 125346775 -34253008 + AT_rich Low_complexity Low_complexity 1 22 0 5 1541 22 0 0 0 chr3 125346836 125346858 -34252925 + AT_rich Low_complexity Low_complexity 1 22 0 5 1541 1121 94 6 0 chr3 125347046 125347205 -34252578 + B2_Mm1a SINE B2 1 160 -33 5 1541 186 43 0 0 chr3 125347205 125347228 -34252555 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 5 1541 903 240 84 108 chr3 125347323 125347702 -34252081 + ORR1D2 LTR MaLR 1 370 0 5 1541 3589 80 12 35 chr3 125348104 125348620 -34251163 - L1Md_F2 LINE L1 -2 6580 6077 5 1541 1353 53 0 0 chr3 125348621 125348791 -34250992 + L1Md_F2 LINE L1 5848 6017 -565 5 1541 438 321 45 10 chr3 125348944 125349142 -34250641 + ID_B1 SINE B4 5 209 -15 5 1541 412 325 40 16 chr3 125349191 125349316 -34250467 + RSINE1 SINE B4 36 163 -2 5 1541 575 27 14 0 chr3 125349339 125349412 -34250371 + (TAGA)n Simple_repeat Simple_repeat 1 74 0 5 1541 261 349 59 31 chr3 125349479 125349701 -34250082 + L1MCa LINE L1 33 260 -6248 5 1541 406 310 114 0 chr3 125349722 125349993 -34249790 - Tigger7 DNA MER2_type -24 2467 2166 5 1541 2644 264 62 8 chr3 125350208 125350971 -34248812 + RCHARR1 DNA MER1_type 169 972 -2 5 1541 405 359 72 0 chr3 125351000 125351167 -34248616 - Tigger7 DNA MER2_type -2302 189 11 5 1541 601 253 92 25 chr3 125351262 125351501 -34248282 + L1MCa LINE L1 323 577 -5931 5 1541 540 0 0 0 chr3 125351534 125351594 -34248189 + (TAGA)n Simple_repeat Simple_repeat 1 60 0 5 1541 255 133 0 0 chr3 125351624 125351669 -34248114 + (CAGA)n Simple_repeat Simple_repeat 2 46 0 5 1541 830 217 46 0 chr3 125351672 125351889 -34247894 + Lx4B LINE L1 6015 6241 -817 5 1541 917 83 0 8 chr3 125351890 125352023 -34247760 + (GGAA)n Simple_repeat Simple_repeat 4 135 0 5 1541 1399 318 74 32 chr3 125352124 125353154 -34246629 + L1MCa LINE L1 651 1723 -4785 5 1541 659 231 108 20 chr3 125353172 125353375 -34246408 + Lx7 LINE L1 7100 7320 -376 5 1541 788 283 41 14 chr3 125353624 125353918 -34245865 + L1MCa LINE L1 2616 2917 -3404 5 1541 2147 245 23 37 chr3 125354039 125354551 -34245232 - RLTR18B LTR ERVK -7 505 1 5 1541 213 39 0 0 chr3 125354709 125354735 -34245048 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 5 1541 1342 216 51 11 chr3 125354744 125355020 -34244763 - Lx9 LINE L1 -264 7380 7094 5 1541 789 250 0 0 chr3 125355018 125355182 -34244601 - Lx9 LINE L1 -892 6752 6589 5 1541 584 199 19 10 chr3 125355963 125356095 -34243688 + ORR1D2 LTR MaLR 253 378 -1 5 1541 200 35 35 0 chr3 125356789 125356818 -34242965 + (ATTG)n Simple_repeat Simple_repeat 3 32 0 5 1541 575 316 22 0 chr3 125356825 125356964 -34242819 - RSINE1 SINE B4 -23 142 1 5 1541 23 54 0 0 chr3 125357478 125357515 -34242268 + AT_rich Low_complexity Low_complexity 1 37 0 5 1541 429 20 0 0 chr3 125358354 125358404 -34241379 + (CAGAG)n Simple_repeat Simple_repeat 3 52 0 5 1541 246 320 58 10 chr3 125358844 125358948 -34240835 + MTEb LTR MaLR 247 355 -24 5 1541 6320 72 10 0 chr3 125359083 125359883 -34239900 - RLTR13C2 LTR ERVK 0 808 1 5 1541 335 211 40 100 chr3 125359885 125359985 -34239798 + PB1D9 SINE Alu 19 112 -8 5 1541 430 308 38 8 chr3 125360388 125360519 -34239264 + RLTR41 LTR ERV1 264 398 -48 5 1541 180 0 0 0 chr3 125360901 125360921 -34238862 + (A)n Simple_repeat Simple_repeat 1 20 0 5 1541 844 250 136 11 chr3 125361233 125361512 -34238271 + RMER21B LTR ERV1 254 567 -275 5 1541 1362 57 0 0 chr3 125362759 125363096 -34236687 + (GAAA)n Simple_repeat Simple_repeat 1 337 0 5 1541 1255 173 114 68 chr3 125363096 125363195 -34236588 - RMER17C LTR ERVK -26 384 287 5 1541 261 0 0 0 chr3 125363195 125363224 -34236559 + (TG)n Simple_repeat Simple_repeat 2 30 0 5 1541 1255 173 114 68 chr3 125363224 125363491 -34236292 - RMER17C LTR ERVK -124 286 1 5 1541 353 22 22 0 chr3 125363814 125363860 -34235923 + (CA)n Simple_repeat Simple_repeat 1 47 0 5 1541 229 276 91 70 chr3 125363881 125364027 -34235756 - MIRb SINE MIR -91 177 22 5 1541 638 314 65 47 chr3 125366406 125366683 -34233100 + B4 SINE B4 6 287 -5 5 1541 372 59 0 0 chr3 125367024 125367075 -34232708 + (CA)n Simple_repeat Simple_repeat 2 52 0 5 1541 243 146 0 0 chr3 125367118 125367159 -34232624 + (TC)n Simple_repeat Simple_repeat 2 42 0 5 1541 2469 300 72 52 chr3 125367184 125368996 -34230787 - Lx7 LINE L1 -526 7170 5334 5 1541 1066 237 69 23 chr3 125368995 125369149 -34230634 - L1_Rod LINE L1 -4275 1572 1423 5 1541 195 100 0 0 chr3 125369149 125369179 -34230604 + (TTG)n Simple_repeat Simple_repeat 2 31 0 5 1541 2684 249 72 44 chr3 125369179 125370118 -34229665 - L1_Rod LINE L1 -4425 1422 462 5 1541 743 196 200 6 chr3 125370305 125370485 -34229298 - B3 SINE B2 0 216 2 5 1541 339 306 126 0 chr3 125370525 125370724 -34229059 - L1MCa LINE L1 -4301 2207 1984 5 1541 22 0 0 0 chr3 125370736 125370758 -34229025 + AT_rich Low_complexity Low_complexity 1 22 0 5 1541 266 0 29 0 chr3 125370826 125370860 -34228923 + (TTTG)n Simple_repeat Simple_repeat 1 35 0 5 1541 1065 103 0 0 chr3 125370860 125371006 -34228777 + B1_Mus1 SINE Alu 1 146 -2 5 1541 302 123 0 30 chr3 125371106 125371173 -34228610 + (TCTCTG)n Simple_repeat Simple_repeat 2 66 0 5 1541 267 212 15 15 chr3 125371194 125371261 -34228522 - ID4_ SINE ID -9 74 8 5 1541 255 244 86 0 chr3 125371345 125371434 -34228349 - L1MA4A LINE L1 -380 5920 5823 5 1541 1980 308 42 44 chr3 125371422 125371643 -34228140 + Lx7 LINE L1 4563 4779 -1101 5 1541 2521 108 10 13 chr3 125371643 125372036 -34227747 + L1_Mus3 LINE L1 6247 6638 0 5 1541 1980 309 42 43 chr3 125372036 125372983 -34226800 + Lx7 LINE L1 4780 5735 -1961 5 1541 3185 169 61 95 chr3 125372987 125373367 -34226416 + RMER6D LTR ERVK 1 348 -372 5 1541 237 108 0 0 chr3 125373367 125373404 -34226379 + (CAGAA)n Simple_repeat Simple_repeat 3 39 0 5 1541 3185 169 61 95 chr3 125373404 125373760 -34226023 + RMER6D LTR ERVK 349 712 -8 5 1541 379 273 92 12 chr3 125373800 125373963 -34225820 - L1MCa LINE L1 -4871 1637 1462 5 1541 324 0 0 0 chr3 125374192 125374228 -34225555 + (TG)n Simple_repeat Simple_repeat 1 36 0 5 1541 363 202 11 22 chr3 125378031 125378122 -34221661 - MER44D DNA MER2_type -587 118 29 5 1541 186 306 48 0 chr3 125379424 125379486 -34220297 + MIRc SINE MIR 88 152 -116 5 1541 234 0 0 0 chr3 125380628 125380654 -34219129 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 5 1541 195 42 0 0 chr3 125382276 125382300 -34217483 + (CAT)n Simple_repeat Simple_repeat 1 24 0 5 1541 906 217 14 63 chr3 125383111 125383332 -34216451 + B3 SINE B2 7 216 0 5 1541 1189 218 167 66 chr3 125383673 125384188 -34215595 + RMER2 LTR ERV1 1 567 0 5 1541 364 302 48 27 chr3 125384201 125384388 -34215395 + MIR SINE MIR 47 237 -25 5 1541 216 158 0 0 chr3 125387416 125387454 -34212329 + (TA)n Simple_repeat Simple_repeat 1 38 0 5 1541 653 269 187 14 chr3 125387456 125387739 -34212044 - Lx6 LINE L1 -11 7449 7118 5 1541 321 291 57 44 chr3 125387992 125388150 -34211633 - RSINE1 SINE B4 -3 162 3 5 1541 893 143 4 126 chr3 125388310 125388549 -34211234 + Lx3B LINE L1 6761 6970 -3 5 1541 241 208 21 0 chr3 125388620 125388668 -34211115 + Lx4B LINE L1 6174 6222 -836 5 1541 21 0 0 0 chr3 125388688 125388709 -34211074 + AT_rich Low_complexity Low_complexity 1 21 0 5 1541 642 157 0 28 chr3 125388953 125389098 -34210685 + Lx2 LINE L1 6509 6646 -351 5 1541 974 138 101 10 chr3 125389098 125389296 -34210487 + Lx LINE L1 6437 6652 -2 5 1541 186 43 0 0 chr3 125389445 125389468 -34210315 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 5 1541 22 0 0 0 chr3 125389517 125389539 -34210244 + AT_rich Low_complexity Low_complexity 1 22 0 5 1541 324 0 0 0 chr3 125389564 125389600 -34210183 + (TAAAA)n Simple_repeat Simple_repeat 2 37 0 5 1541 186 315 37 0 chr3 125391153 125391207 -34208576 - MIR SINE MIR -116 92 37 5 1541 351 302 137 25 chr3 125393655 125393852 -34205931 + MIR SINE MIR 43 261 -1 5 1541 492 18 0 0 chr3 125394360 125394417 -34205366 + (TG)n Simple_repeat Simple_repeat 2 58 0 5 1541 443 343 28 14 chr3 125394422 125394567 -34205216 - RSINE1 SINE B4 -18 147 1 5 1541 241 290 42 28 chr3 125395111 125395182 -34204601 - RMER17B LTR ERVK -185 773 702 5 1541 271 314 57 19 chr3 125395507 125395666 -34204117 - MIR SINE MIR -16 246 82 5 1541 833 320 114 8 chr3 125396932 125397405 -34202378 + Lx8 LINE L1 6916 7438 -35 5 1541 1140 69 7 0 chr3 125398952 125399097 -34200686 + B1_Mus1 SINE Alu 3 148 0 5 1541 183 42 0 0 chr3 125399097 125399121 -34200662 + (TAAAAA)n Simple_repeat Simple_repeat 6 29 0 5 1541 189 0 0 0 chr3 125399884 125399905 -34199878 + (GAAAA)n Simple_repeat Simple_repeat 2 22 0 5 1541 333 321 0 13 chr3 125399919 125399998 -34199785 + PB1 SINE Alu 14 91 -36 5 1541 335 335 35 76 chr3 125400115 125400403 -34199380 + BLACKJACK DNA AcHobo 1999 2274 -670 5 1541 1200 102 0 0 chr3 125403915 125404123 -34195660 + (TTTC)n Simple_repeat Simple_repeat 1 208 0 5 1541 291 294 73 7 chr3 125404574 125404794 -34194989 - L1_Rod LINE L1 -3860 2020 1781 5 1541 478 212 111 55 chr3 125405023 125405226 -34194557 + L1_Mur3 LINE L1 2827 3074 -3069 5 1541 3846 188 93 38 chr3 125405227 125406025 -34193758 + RMER21B LTR ERV1 1 842 0 5 1541 931 293 84 40 chr3 125406087 125406338 -34193445 + L1_Mur3 LINE L1 3103 3381 -2499 5 1541 444 37 0 0 chr3 125406338 125406392 -34193391 + (CA)n Simple_repeat Simple_repeat 1 54 0 5 1541 931 293 84 40 chr3 125406392 125406841 -34192942 + L1_Mur3 LINE L1 3382 3834 -2046 5 1541 887 273 52 27 chr3 125406828 125407197 -34192586 + L1_Mur3 LINE L1 3974 4351 -1529 5 1541 1582 349 86 20 chr3 125407194 125408204 -34191579 + Lx8 LINE L1 5904 6980 -493 5 1541 252 0 93 0 chr3 125408408 125408451 -34191332 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 5 1541 494 143 0 11 chr3 125408889 125408981 -34190802 + GA-rich Low_complexity Low_complexity 3 93 0 5 1541 1245 243 105 20 chr3 125409043 125409396 -34190387 - MTD LTR MaLR -14 405 23 5 1541 406 315 109 55 chr3 125409996 125410271 -34189512 - RLTR26 LTR ERVK -184 458 169 5 1541 231 204 0 0 chr3 125413281 125413335 -34186448 + (TCCA)n Simple_repeat Simple_repeat 4 57 0 5 1541 633 14 0 0 chr3 125413773 125413847 -34185936 + (CA)n Simple_repeat Simple_repeat 2 75 0 5 1541 910 237 63 5 chr3 125413852 125414043 -34185740 - MTC LTR MaLR -203 218 17 5 1541 26 0 0 0 chr3 125414997 125415023 -34184760 + AT_rich Low_complexity Low_complexity 1 26 0 5 1541 432 0 0 0 chr3 125417187 125417235 -34182548 + (TC)n Simple_repeat Simple_repeat 1 48 0 5 1541 261 0 0 0 chr3 125417235 125417263 -34182520 + (CA)n Simple_repeat Simple_repeat 1 29 0 6 1541 181 293 47 47 chr3 125417426 125417512 -34182271 + L4 LINE RTE 202 287 -1742 6 1541 1290 244 72 157 chr3 125418008 125418606 -34181177 - RMER15 LTR ERVL 0 575 29 6 1541 1004 220 4 30 chr3 125418620 125418850 -34180933 + URR1B DNA MER1_type 1 224 -1 6 1541 1288 241 101 48 chr3 125419085 125419503 -34180280 - RMER19B LTR ERVK -2 900 461 6 1541 1024 235 35 103 chr3 125419541 125419831 -34179952 - RMER19B LTR ERVK -332 279 10 6 1541 486 325 103 46 chr3 125419848 125420091 -34179692 - MLT1G LTR MaLR -56 539 287 6 1541 256 328 146 47 chr3 125420124 125420316 -34179467 - MLT1G LTR MaLR -381 214 4 6 1541 616 241 69 17 chr3 125420389 125420562 -34179221 + Tigger15a DNA TcMar 131 312 -403 6 1541 405 0 0 0 chr3 125422316 125422361 -34177422 + (TG)n Simple_repeat Simple_repeat 1 45 0 6 1541 474 18 0 0 chr3 125423194 125423249 -34176534 + (TTTTA)n Simple_repeat Simple_repeat 2 56 0 6 1541 22 35 0 0 chr3 125423897 125423926 -34175857 + AT_rich Low_complexity Low_complexity 1 29 0 6 1541 886 266 142 44 chr3 125424094 125424552 -34175231 + RLTR28B LTR ERVL 1 504 -20 6 1541 1428 208 75 32 chr3 125425389 125425791 -34173992 - MTD LTR MaLR 0 419 1 6 1541 200 197 15 29 chr3 125425903 125425971 -34173812 + (TAA)n Simple_repeat Simple_repeat 2 68 0 6 1541 314 247 7 20 chr3 125426570 125426719 -34173064 + (TA)n Simple_repeat Simple_repeat 2 148 0 6 1541 276 276 0 101 chr3 125426862 125426971 -34172812 + B3A SINE B2 99 196 -2 6 1541 252 0 0 0 chr3 125428883 125428911 -34170872 + (TG)n Simple_repeat Simple_repeat 1 28 0 6 1541 378 0 0 0 chr3 125428911 125428952 -34170831 + (GA)n Simple_repeat Simple_repeat 1 42 0 6 1541 21 36 0 0 chr3 125429900 125429928 -34169855 + AT_rich Low_complexity Low_complexity 1 28 0 6 1541 184 211 67 50 chr3 125429966 125430026 -34169757 - L3 LINE CR1 -728 3761 3701 6 1541 459 0 0 0 chr3 125430165 125430216 -34169567 + (CA)n Simple_repeat Simple_repeat 1 51 0 6 1541 359 343 48 41 chr3 125430929 125431147 -34168636 + MIRb SINE MIR 29 248 -20 6 1541 30 27 0 0 chr3 125431691 125431728 -34168055 + AT_rich Low_complexity Low_complexity 1 37 0 6 1541 919 330 97 34 chr3 125431986 125432462 -34167321 - LTR53 LTR ERVL -11 508 3 6 1541 233 394 15 0 chr3 125434712 125434844 -34164939 + MIR SINE MIR 100 233 -29 6 1541 978 130 0 33 chr3 125435662 125435799 -34163984 + B1_Mm SINE Alu 2 138 -9 6 1541 423 52 0 0 chr3 125435799 125435857 -34163926 + (CAAA)n Simple_repeat Simple_repeat 2 59 0 6 1541 978 130 0 33 chr3 125435857 125435870 -34163913 + B1_Mm SINE Alu 139 147 0 6 1542 186 118 0 0 chr3 125435905 125435939 -34163844 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 6 1542 313 329 168 60 chr3 125436278 125436611 -34163172 - MLT1J-int LTR MaLR -36 1351 983 6 1542 257 238 0 12 chr3 125436916 125436997 -34162786 + CT-rich Low_complexity Low_complexity 1 80 0 6 1542 1556 160 18 11 chr3 125437511 125437789 -34161994 + ORR1B2 LTR MaLR 1 280 -87 6 1542 3789 55 4 0 chr3 125438181 125438657 -34161126 + L1Md_F2 LINE L1 6093 6570 -12 6 1542 267 323 92 8 chr3 125438735 125438866 -34160917 - Lx8 LINE L1 -866 6607 6466 6 1542 564 318 29 0 chr3 125438912 125439085 -34160698 - Lx8 LINE L1 -1083 6390 6213 6 1542 387 0 0 0 chr3 125439286 125439329 -34160454 + (CA)n Simple_repeat Simple_repeat 2 44 0 6 1542 872 297 72 16 chr3 125439423 125439809 -34159974 - Lx8 LINE L1 -27 5820 5413 6 1542 405 39 0 0 chr3 125439840 125439891 -34159892 + (TG)n Simple_repeat Simple_repeat 2 52 0 6 1542 3108 193 46 15 chr3 125440013 125440125 -34159658 - Lx2B LINE L1 -7 6993 6883 6 1542 189 0 0 0 chr3 125440125 125440146 -34159637 + (CCCA)n Simple_repeat Simple_repeat 1 21 0 6 1542 3108 193 46 15 chr3 125440146 125440639 -34159144 - Lx2B LINE L1 -118 6882 6371 6 1542 582 311 25 21 chr3 125440650 125440890 -34158893 - L1_Mur3 LINE L1 -1609 4271 4031 6 1542 318 273 43 43 chr3 125441430 125441568 -34158215 - Lx8 LINE L1 -1829 4057 3919 6 1542 1272 204 48 17 chr3 125441970 125442418 -34157365 + RMER15 LTR ERVL 30 553 -22 6 1542 515 236 6 6 chr3 125442437 125442606 -34157177 + RMER15-int LTR ERVL 1 233 -4766 6 1542 412 189 132 0 chr3 125442835 125442941 -34156842 + RMER15-int LTR ERVL 512 631 -4368 6 1542 3798 274 72 17 chr3 125442923 125444070 -34155713 + RMER15-int LTR ERVL 752 1961 -3038 6 1542 184 54 26 51 chr3 125444229 125444268 -34155515 + (TAAA)n Simple_repeat Simple_repeat 2 39 0 6 1542 1409 261 135 28 chr3 125444309 125444805 -34154978 + RMER15 LTR ERVL 27 575 0 6 1542 316 279 97 16 chr3 125446034 125446158 -34153625 + RMER15 LTR ERVL 427 560 -15 6 1542 525 230 0 0 chr3 125446509 125446635 -34153148 + A-rich Low_complexity Low_complexity 1 126 0 6 1542 620 50 29 20 chr3 125447081 125447183 -34152600 + (TAGA)n Simple_repeat Simple_repeat 3 105 0 6 1542 1149 320 124 43 chr3 125449202 125449763 -34150020 - Lx8 LINE L1 -12 7461 6850 6 1542 221 0 35 0 chr3 125449763 125449792 -34149991 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 6 1542 1149 320 124 43 chr3 125449792 125450173 -34149610 - Lx8 LINE L1 -624 6849 6443 6 1542 7277 59 10 3 chr3 125450463 125451788 -34147995 - L1Md_F2 LINE L1 0 6582 5245 6 1542 676 200 56 14 chr3 125451859 125452001 -34147782 - B1_Mus1 SINE Alu 0 148 1 6 1542 817 271 14 0 chr3 125452138 125452348 -34147435 - B3 SINE B2 -3 213 1 6 1542 622 243 132 206 chr3 125453099 125453335 -34146448 + MTE2b LTR MaLR 11 252 -127 6 1542 1483 36 0 5 chr3 125453335 125453528 -34146255 - L1Md_F3 LINE L1 -14 6570 6379 6 1542 622 243 132 206 chr3 125453528 125453685 -34146098 + MTE2b LTR MaLR 253 375 -4 6 1542 21 0 0 0 chr3 125453686 125453707 -34146076 + AT_rich Low_complexity Low_complexity 1 21 0 6 1542 492 327 13 25 chr3 125453750 125453907 -34145876 + MTE-int LTR MaLR 251 405 -1175 6 1542 1140 323 113 37 chr3 125453958 125454550 -34145233 + MTE-int LTR MaLR 611 1247 -333 6 1542 198 0 0 0 chr3 125454570 125454592 -34145191 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 6 1542 798 271 163 16 chr3 125454785 125455036 -34144747 + MTE2a LTR MaLR 80 367 -12 6 1542 649 283 53 19 chr3 125457776 125457985 -34141798 + MTEa LTR MaLR 156 371 -8 6 1542 3443 75 0 15 chr3 125458080 125458551 -34141232 - L1Md_F2 LINE L1 -2 6580 6117 6 1542 225 0 0 0 chr3 125458551 125458576 -34141207 + (A)n Simple_repeat Simple_repeat 1 25 0 6 1542 1918 139 95 67 chr3 125458925 125459387 -34140396 - IAPLTR2_Mm LTR ERVK 0 475 1 6 1542 267 54 0 0 chr3 125459403 125459440 -34140343 + (TTTTTG)n Simple_repeat Simple_repeat 6 42 0 6 1542 477 0 0 0 chr3 125459519 125459572 -34140211 + (TAAA)n Simple_repeat Simple_repeat 2 54 0 6 1542 255 215 0 0 chr3 125461331 125461396 -34138387 + (CA)n Simple_repeat Simple_repeat 2 66 0 6 1542 478 164 36 12 chr3 125461416 125461583 -34138200 + (CA)n Simple_repeat Simple_repeat 2 172 0 6 1542 695 176 13 7 chr3 125461633 125461939 -34137844 + (CA)n Simple_repeat Simple_repeat 1 307 0 6 1542 207 0 0 0 chr3 125463063 125463086 -34136697 + (CA)n Simple_repeat Simple_repeat 2 24 0 6 1542 531 0 0 0 chr3 125463086 125463144 -34136639 + (GA)n Simple_repeat Simple_repeat 2 60 0 6 1542 5073 106 6 13 chr3 125463972 125464772 -34135011 - L1_Mus3 LINE L1 -296 6680 5528 6 1542 2158 98 29 20 chr3 125464772 125465115 -34134668 + L1_Mus3 LINE L1 6292 6637 -1 6 1542 333 0 0 0 chr3 125465855 125465892 -34133891 + (CA)n Simple_repeat Simple_repeat 2 38 0 6 1542 848 119 42 7 chr3 125468511 125468655 -34131128 + RLTR13B1 LTR ERVK 745 893 0 6 1542 228 216 0 0 chr3 125468846 125468897 -34130886 + (TG)n Simple_repeat Simple_repeat 1 51 0 6 1542 21 0 0 0 chr3 125469176 125469197 -34130586 + AT_rich Low_complexity Low_complexity 1 21 0 6 1542 213 347 69 0 chr3 125469628 125469700 -34130083 + B4A SINE B4 81 157 -135 6 1542 354 230 0 13 chr3 125470280 125470355 -34129428 + MTD LTR MaLR 8 81 -338 6 1542 421 282 16 8 chr3 125470334 125470459 -34129324 - MTD LTR MaLR -293 126 1 6 1542 425 213 26 53 chr3 125470459 125470573 -34129210 - MTD-int LTR MaLR 0 1258 1148 6 1542 4594 68 2 11 chr3 125471038 125471649 -34128134 + L1Md_F2 LINE L1 5964 6568 -14 6 1542 201 94 0 0 chr3 125471649 125471681 -34128102 + (TAA)n Simple_repeat Simple_repeat 2 33 0 6 1542 356 296 22 22 chr3 125471722 125471812 -34127971 + B3A SINE B2 1 90 -108 6 1542 324 175 0 0 chr3 125472097 125472160 -34127623 + (CA)n Simple_repeat Simple_repeat 1 63 0 6 1542 302 297 84 23 chr3 125472350 125472481 -34127302 + L1MC LINE L1 3829 3967 -2179 6 1542 3260 124 0 31 chr3 125472548 125473071 -34126712 - Lx3A LINE L1 0 6981 6475 6 1542 33223 87 11 5 chr3 125473072 125478269 -34121514 - L1Md_A LINE L1 -30 5853 625 6 1542 659 164 0 8 chr3 125478449 125478578 -34121205 + (TGGA)n Simple_repeat Simple_repeat 4 131 0 6 1542 609 92 0 0 chr3 125478578 125478676 -34121107 + (CA)n Simple_repeat Simple_repeat 2 99 0 6 1542 404 254 74 34 chr3 125478685 125478860 -34120923 - L1MB7 LINE L1 -276 5908 5727 6 1542 2063 116 29 0 chr3 125478930 125479240 -34120543 - ORR1A2 LTR MaLR -8 319 1 6 1542 271 270 34 66 chr3 125479246 125479381 -34120402 - L1M4 LINE L1 -556 5606 5475 6 1542 37 39 0 0 chr3 125479382 125479433 -34120350 + AT_rich Low_complexity Low_complexity 1 51 0 6 1542 488 279 124 16 chr3 125479436 125479622 -34120161 - B3 SINE B2 -10 206 1 6 1542 258 56 0 0 chr3 125479765 125479801 -34119982 + (TG)n Simple_repeat Simple_repeat 1 36 0 6 1542 377 355 49 7 chr3 125479964 125480106 -34119677 - B4A SINE B4 -4 288 141 6 1542 309 348 36 36 chr3 125480566 125480706 -34119077 - B4A SINE B4 -151 141 2 6 1542 633 358 44 22 chr3 125480706 125480931 -34118852 - B4A SINE B4 -60 232 3 6 1542 778 292 43 20 chr3 125480933 125481366 -34118417 - L1M4 LINE L1 -813 5333 4831 6 1542 4769 145 73 31 chr3 125481380 125482291 -34117492 - RMER17B LTR ERVK -8 950 1 6 1542 1013 171 45 27 chr3 125482292 125482514 -34117269 + URR1A DNA MER1_type 1 226 0 6 1542 21 36 0 0 chr3 125483014 125483042 -34116741 + AT_rich Low_complexity Low_complexity 1 28 0 6 1542 213 211 0 0 chr3 125485552 125485609 -34114174 + (TCTCTG)n Simple_repeat Simple_repeat 4 60 0 6 1542 190 303 111 11 chr3 125486698 125486788 -34112995 - L2a LINE L2 -350 3076 2978 6 1542 362 372 37 37 chr3 125487231 125487530 -34112253 - MLT1B LTR MaLR -21 369 71 6 1542 243 0 0 0 chr3 125488309 125488336 -34111447 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 6 1542 21 36 0 0 chr3 125489298 125489326 -34110457 + AT_rich Low_complexity Low_complexity 1 28 0 6 1542 254 276 180 48 chr3 125489801 125490007 -34109776 + L3 LINE CR1 2286 2518 -1971 6 1542 3768 52 2 0 chr3 125490864 125491330 -34108453 + L1Md_F2 LINE L1 6113 6579 -3 6 1542 796 307 81 62 chr3 125492295 125492825 -34106958 - RMER13A LTR ERVK -337 571 2 6 1542 387 0 0 0 chr3 125493007 125493050 -34106733 + (CA)n Simple_repeat Simple_repeat 1 43 0 6 1542 290 302 23 0 chr3 125493429 125493515 -34106268 + RSINE1 SINE B4 7 94 -71 7 1542 353 363 43 150 chr3 125493682 125494009 -34105774 + B4 SINE B4 1 292 0 7 1542 22 0 0 0 chr3 125494719 125494741 -34105042 + AT_rich Low_complexity Low_complexity 1 22 0 7 1542 215 316 8 34 chr3 125496781 125496899 -34102884 + GA-rich Low_complexity Low_complexity 4 118 0 7 1542 3457 192 112 64 chr3 125497196 125498045 -34101738 + RMER19B LTR ERVK 1 890 -12 7 1542 2684 25 0 3 chr3 125498055 125498373 -34101410 + L1Md_F2 LINE L1 5270 5586 -297 7 1542 8027 48 1 3 chr3 125498374 125499412 -34100371 + L1Md_F2 LINE L1 5588 6582 0 7 1542 423 0 0 0 chr3 125500014 125500061 -34099722 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 1 1542 909 144 0 51 chr3 125500183 125500359 -34099424 - L1Md_F2 LINE L1 0 6582 6416 2 1542 369 133 0 0 chr3 125502110 125502185 -34097598 + (TC)n Simple_repeat Simple_repeat 1 75 0 3 1542 195 167 0 0 chr3 125502184 125502226 -34097557 + (CA)n Simple_repeat Simple_repeat 1 42 0 4 1542 932 274 132 31 chr3 125504006 125504323 -34095460 - ORR1D2 LTR MaLR 0 370 22 5 1542 1467 192 133 9 chr3 125504327 125504719 -34095064 - ORR1D2-int LTR MaLR -39 1541 981 5 1542 569 214 11 17 chr3 125504720 125504896 -34094887 + CT-rich Low_complexity Low_complexity 5 179 0 6 1542 515 320 120 34 chr3 125504920 125505211 -34094572 - MTE-int LTR MaLR -464 1116 801 7 1542 571 353 42 21 chr3 125505496 125505826 -34093957 + Lx9 LINE L1 7095 7431 -213 8 1542 369 0 0 0 chr3 125505854 125505895 -34093888 + (TG)n Simple_repeat Simple_repeat 2 42 0 9 1542 798 73 0 0 chr3 125507427 125507537 -34092246 + (CA)n Simple_repeat Simple_repeat 2 111 0 1 1542 487 244 29 6 chr3 125507551 125507724 -34092059 + (CA)n Simple_repeat Simple_repeat 2 178 0 1 1542 624 14 0 0 chr3 125508620 125508693 -34091090 + (TG)n Simple_repeat Simple_repeat 2 74 0 1 1542 1875 192 44 31 chr3 125509552 125510009 -34089774 - RMER6A LTR ERVK -12 744 282 1 1542 228 111 0 0 chr3 125510011 125510047 -34089736 + (CCCCCT)n Simple_repeat Simple_repeat 6 41 0 1 1542 621 181 31 0 chr3 125510257 125510384 -34089399 - RMER6A LTR ERVK -442 314 184 1 1542 4045 120 87 17 chr3 125510508 125511196 -34088587 + Lx LINE L1 5919 6654 0 1 1542 624 110 359 0 chr3 125511204 125511349 -34088434 - RMER6A LTR ERVK -523 197 1 1 1542 210 255 0 0 chr3 125511536 125511583 -34088200 + T-rich Low_complexity Low_complexity 3 49 0 1 1542 747 289 31 8 chr3 125511756 125512011 -34087772 - Lx8 LINE L1 -241 7232 6972 1 1542 294 233 40 14 chr3 125512004 125512078 -34087705 - Lx8 LINE L1 -956 6517 6442 1 1542 398 209 35 11 chr3 125512815 125512902 -34086881 - MER5A1 DNA MER1_type -30 136 48 1 1542 235 301 58 46 chr3 125513019 125513106 -34086677 - L2b LINE L2 0 3375 3288 1 1542 27 29 0 0 chr3 125514211 125514245 -34085538 + AT_rich Low_complexity Low_complexity 1 34 0 1 1542 180 53 79 0 chr3 125515122 125515160 -34084623 + (TTTTA)n Simple_repeat Simple_repeat 4 44 0 2 1542 238 317 157 11 chr3 125515607 125515705 -34084078 + B1F SINE Alu 3 111 -6 2 1542 200 338 122 49 chr3 125516243 125516529 -34083254 - L3 LINE CR1 -864 3625 3319 2 1542 278 330 0 18 chr3 125516537 125516648 -34083135 + A-rich Low_complexity Low_complexity 1 109 0 2 1542 189 389 45 8 chr3 125517196 125517328 -34082455 - L3 LINE CR1 -1579 2910 2774 2 1542 259 288 95 9 chr3 125517876 125517981 -34081802 + MLT1C LTR MaLR 9 122 -345 2 1542 22 0 0 0 chr3 125518385 125518407 -34081376 + AT_rich Low_complexity Low_complexity 1 22 0 2 1542 716 279 76 19 chr3 125518994 125519257 -34080526 - B4A SINE B4 -14 278 1 2 1542 186 267 16 32 chr3 125519505 125519567 -34080216 - L3 LINE CR1 -3544 945 885 2 1542 747 175 22 4 chr3 125519870 125520106 -34079677 + CT-rich Low_complexity Low_complexity 1 240 0 2 1542 260 375 7 22 chr3 125521257 125521396 -34078387 - MIRb SINE MIR -25 243 107 2 1542 23 33 0 0 chr3 125521913 125521943 -34077840 + AT_rich Low_complexity Low_complexity 1 30 0 2 1542 9938 88 6 0 chr3 125523664 125525027 -34074756 - L1_Mm LINE L1 -453 5430 4060 3 1542 318 73 0 0 chr3 125525026 125525067 -34074716 + L1_Mus1 LINE L1 6291 6331 -236 3 1542 5222 44 0 6 chr3 125525067 125525712 -34074071 + L1Md_F3 LINE L1 5930 6570 -14 3 1542 1732 70 24 12 chr3 125525717 125525964 -34073819 + L1_Mus1 LINE L1 6317 6566 -1 3 1542 191 327 0 0 chr3 125526658 125526713 -34073070 - L2b LINE L2 -65 3310 3256 3 1542 384 119 0 0 chr3 125528070 125528129 -34071654 + (TCTA)n Simple_repeat Simple_repeat 4 62 0 3 1542 366 61 0 0 chr3 125528201 125528250 -34071533 + (TTTTG)n Simple_repeat Simple_repeat 2 50 0 3 1542 630 268 137 29 chr3 125528934 125529276 -34070507 + MTEa LTR MaLR 1 379 0 3 1542 315 0 0 0 chr3 125530869 125530904 -34068879 + (TG)n Simple_repeat Simple_repeat 2 36 0 3 1542 233 299 0 61 chr3 125530958 125531040 -34068743 + B4 SINE B4 11 87 -205 3 1542 549 235 0 137 chr3 125531167 125531320 -34068463 + B1_Mur1 SINE Alu 1 132 -17 3 1542 557 260 8 16 chr3 125531330 125531455 -34068328 - B1_Mus2 SINE Alu -23 124 1 4 1542 450 0 0 0 chr3 125531985 125532035 -34067748 + (GA)n Simple_repeat Simple_repeat 1 50 0 4 1542 25 0 0 0 chr3 125532569 125532594 -34067189 + AT_rich Low_complexity Low_complexity 1 25 0 4 1542 215 155 55 27 chr3 125532822 125532895 -34066888 + (TTATA)n Simple_repeat Simple_repeat 4 78 0 4 1542 564 15 0 0 chr3 125533081 125533146 -34066637 + (CA)n Simple_repeat Simple_repeat 2 66 0 4 1542 504 0 0 0 chr3 125533146 125533201 -34066582 + (TA)n Simple_repeat Simple_repeat 2 57 0 4 1542 202 212 105 105 chr3 125533222 125533317 -34066466 - MIRb SINE MIR -118 150 56 4 1542 353 321 66 30 chr3 125533481 125533648 -34066135 + MLT1A0 LTR MaLR 66 238 -127 4 1542 333 0 0 0 chr3 125533747 125533784 -34065999 + (TG)n Simple_repeat Simple_repeat 2 38 0 4 1542 248 292 0 0 chr3 125534242 125534307 -34065476 + B4 SINE B4 222 286 -6 4 1542 373 36 36 0 chr3 125535302 125535357 -34064426 + (TAAA)n Simple_repeat Simple_repeat 3 59 0 5 1542 299 383 48 6 chr3 125537163 125537331 -34062452 - MLT1J-int LTR MaLR -1201 186 12 5 1542 1685 186 66 64 chr3 125537596 125538080 -34061703 + RMER6C LTR ERVK 119 603 -87 5 1542 396 335 23 29 chr3 125538459 125538631 -34061152 - MIR SINE MIR -72 190 20 5 1542 198 368 94 20 chr3 125539034 125539278 -34060505 + L2 LINE L2 428 689 -2730 5 1542 1192 211 193 76 chr3 125539696 125540172 -34059611 + MT2A LTR ERVL 1 532 -1 5 1542 257 305 55 104 chr3 125540466 125540649 -34059134 + MLT1E LTR MaLR 131 304 -349 5 1542 351 293 139 33 chr3 125540656 125540836 -34058947 + MLT1D LTR MaLR 132 330 -175 5 1542 741 289 141 34 chr3 125540845 125541020 -34058763 + B4A SINE B4 3 208 -84 5 1542 1084 97 0 0 chr3 125541020 125541165 -34058618 + B1_Mus1 SINE Alu 1 145 -3 5 1542 554 0 15 0 chr3 125541166 125541232 -34058551 + (GA)n Simple_repeat Simple_repeat 2 68 0 6 1542 741 289 141 34 chr3 125541232 125541316 -34058467 + B4A SINE B4 209 292 0 5 1542 240 35 0 0 chr3 125541355 125541384 -34058399 + (CA)n Simple_repeat Simple_repeat 2 30 0 6 1542 347 287 62 54 chr3 125541395 125541524 -34058259 + MLT1D LTR MaLR 343 472 -33 5 1542 1146 172 73 29 chr3 125541895 125542141 -34057642 - Lx5 LINE L1 -3 7047 6791 6 1542 723 261 115 0 chr3 125542794 125542959 -34056824 - B3 SINE B2 -32 184 1 6 1542 540 269 81 0 chr3 125544609 125544795 -34054988 - L1MC1 LINE L1 -287 6046 5846 6 1542 205 152 21 21 chr3 125544906 125544953 -34054830 + (TA)n Simple_repeat Simple_repeat 2 48 0 6 1542 579 88 0 11 chr3 125544991 125545083 -34054700 - L1_Mus2 LINE L1 0 6566 6476 6 1542 526 199 97 103 chr3 125545562 125545747 -34054036 + B4 SINE B4 38 221 -71 6 1542 1097 36 0 0 chr3 125545614 125545752 -34054031 + B1_Mus1 SINE Alu 11 148 0 6 1542 333 0 0 0 chr3 125545752 125545789 -34053994 + (A)n Simple_repeat Simple_repeat 1 37 0 6 1542 565 375 61 39 chr3 125546163 125546673 -34053110 - L4 LINE RTE -1232 797 277 7 1542 319 202 200 11 chr3 125546811 125546906 -34052877 + RSINE1 SINE B4 9 121 -44 7 1542 24 0 0 0 chr3 125547165 125547189 -34052594 + AT_rich Low_complexity Low_complexity 1 24 0 7 1542 225 167 0 0 chr3 125548326 125548380 -34051403 + CT-rich Low_complexity Low_complexity 1 54 0 7 1542 243 0 0 0 chr3 125548754 125548781 -34051002 + (CA)n Simple_repeat Simple_repeat 2 28 0 7 1542 23 54 0 0 chr3 125549389 125549426 -34050357 + AT_rich Low_complexity Low_complexity 1 37 0 7 1542 696 275 105 117 chr3 125550699 125550804 -34048979 + RLTR23 LTR ERV1 8 104 -326 7 1542 198 0 0 0 chr3 125550804 125550826 -34048957 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 7 1542 696 275 105 117 chr3 125550826 125551148 -34048635 + RLTR23 LTR ERV1 105 430 0 7 1542 407 99 48 19 chr3 125552531 125552634 -34047149 + (TA)n Simple_repeat Simple_repeat 1 106 0 7 1542 207 0 0 0 chr3 125553082 125553105 -34046678 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 7 1542 1232 250 162 8 chr3 125553620 125553983 -34045800 - MTD LTR MaLR 0 419 1 8 1542 414 0 0 0 chr3 125554728 125554774 -34045009 + (GA)n Simple_repeat Simple_repeat 1 46 0 8 1542 1564 62 9 23 chr3 125555138 125555352 -34044431 + L1_Mus1 LINE L1 6357 6567 0 8 1542 251 50 0 48 chr3 125556184 125556226 -34043557 + (TTTTTG)n Simple_repeat Simple_repeat 3 42 0 8 1542 231 271 29 167 chr3 125556843 125556945 -34042838 + RSINE1 SINE B4 78 165 0 8 1542 848 138 15 0 chr3 125559337 125559467 -34040316 + B1_Mur4 SINE Alu 10 141 -9 8 1542 525 58 0 0 chr3 125559475 125559544 -34040239 + (CA)n Simple_repeat Simple_repeat 2 70 0 8 1542 504 0 0 0 chr3 125559544 125559599 -34040184 + (GA)n Simple_repeat Simple_repeat 2 57 0 8 1542 351 0 0 0 chr3 125559673 125559712 -34040071 + (TTCC)n Simple_repeat Simple_repeat 1 39 0 8 1542 3666 73 2 2 chr3 125559712 125560369 -34039414 - L1_Mus1 LINE L1 0 6567 6082 8 1542 2319 57 0 0 chr3 125560369 125560665 -34039118 + L1_Mus1 LINE L1 5735 6030 -537 8 1542 380 284 40 72 chr3 125560665 125560790 -34038993 - RSINE1 SINE B4 -44 121 1 9 1542 241 294 47 12 chr3 125560796 125560882 -34038901 - PB1D10 SINE Alu -7 110 22 9 1542 779 264 36 15 chr3 125561012 125561208 -34038575 + ID_B1 SINE B4 5 204 -20 9 1542 251 325 191 41 chr3 125561641 125562010 -34037773 + L2a LINE L2 2954 3414 -12 9 1542 1646 201 9 9 chr3 125562947 125563273 -34036510 - Lx9 LINE L1 -666 6978 6653 9 1542 1263 257 14 5 chr3 125563272 125563639 -34036144 + Lx9 LINE L1 7014 7418 -226 9 1542 29 28 0 0 chr3 125563742 125563778 -34036005 + AT_rich Low_complexity Low_complexity 1 36 0 9 1542 1054 102 12 0 chr3 125564071 125564238 -34035545 + (GAAA)n Simple_repeat Simple_repeat 4 172 0 9 1542 180 218 0 83 chr3 125564265 125564325 -34035458 - L3 LINE CR1 -2543 1946 1892 9 1542 249 33 0 0 chr3 125564945 125564975 -34034808 + (CA)n Simple_repeat Simple_repeat 1 30 0 9 1542 22 70 0 0 chr3 125565772 125565815 -34033968 + AT_rich Low_complexity Low_complexity 1 43 0 9 1542 279 200 20 0 chr3 125565819 125565869 -34033914 - RMER15 LTR ERVL -13 562 512 1 192 278 135 0 0 chr3 125566930 125566982 -34032801 - L1_Mus3 LINE L1 -12 6626 6575 1 1543 288 0 0 0 chr3 125568139 125568171 -34031612 + (CAAAA)n Simple_repeat Simple_repeat 3 34 0 1 1543 212 131 21 21 chr3 125569648 125569695 -34030088 + A-rich Low_complexity Low_complexity 2 48 0 1 1543 1168 36 0 0 chr3 125571664 125571801 -34027982 + B1_Mus2 SINE Alu 1 137 -10 1 1543 297 51 0 0 chr3 125572755 125572794 -34026989 + (CCAA)n Simple_repeat Simple_repeat 2 40 0 1 1543 339 237 13 0 chr3 125572976 125573052 -34026731 + ID4_ SINE ID 2 78 -5 1 1543 259 318 41 12 chr3 125573702 125573839 -34025944 + MIRc SINE MIR 1 144 -64 1 1543 396 322 55 40 chr3 125573870 125574186 -34025597 + MTEa LTR MaLR 2 379 0 1 1543 243 0 0 0 chr3 125575432 125575459 -34024324 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 1 1543 283 288 45 119 chr3 125575994 125576141 -34023642 + ID_B1 SINE B4 9 155 -137 1 1543 235 0 28 28 chr3 125576174 125576210 -34023573 + (TAA)n Simple_repeat Simple_repeat 2 37 0 1 1543 30 45 0 0 chr3 125576308 125576352 -34023431 + AT_rich Low_complexity Low_complexity 1 44 0 1 1543 522 376 41 36 chr3 125578722 125578918 -34020865 + B3 SINE B2 1 197 -19 1 1543 24 0 0 0 chr3 125578964 125578988 -34020795 + AT_rich Low_complexity Low_complexity 1 24 0 1 1543 345 70 0 0 chr3 125579057 125579100 -34020683 + L1Md_T LINE L1 5544 5586 -297 1 1543 8421 33 0 0 chr3 125579101 125580096 -34019687 + L1Md_T LINE L1 5588 6582 0 1 1543 1124 58 0 0 chr3 125580622 125580761 -34019022 + B1_Mus1 SINE Alu 1 139 -9 1 1543 188 34 0 33 chr3 125580761 125580791 -34018992 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1 1543 1653 112 0 8 chr3 125581487 125581740 -34018043 + L1Md_F2 LINE L1 5769 6019 -635 1 1543 5309 100 12 28 chr3 125581714 125582997 -34016786 + L1Md_F2 LINE L1 5430 6654 0 1 1543 222 37 0 0 chr3 125583905 125583932 -34015851 + (T)n Simple_repeat Simple_repeat 1 27 0 1 1543 356 94 136 34 chr3 125584127 125584215 -34015568 - Lx2 LINE L1 0 6997 6901 1 1543 350 354 9 0 chr3 125584215 125584328 -34015455 - B1F SINE Alu -2 147 34 1 1543 207 0 0 0 chr3 125584389 125584412 -34015371 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 1 1543 1030 96 0 0 chr3 125584412 125584548 -34015235 - B1_Mus2 SINE Alu -10 137 2 1 1543 263 93 23 0 chr3 125585203 125585246 -34014537 + (TC)n Simple_repeat Simple_repeat 2 45 0 1 1543 23 54 0 0 chr3 125586435 125586472 -34013311 + AT_rich Low_complexity Low_complexity 1 37 0 1 1543 405 309 133 50 chr3 125586476 125586694 -34013089 + B4A SINE B4 2 237 -55 1 1543 371 21 21 0 chr3 125586724 125586772 -34013011 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 1543 184 297 269 15 chr3 125586817 125586947 -34012836 + MIRc SINE MIR 74 236 -32 1 1543 25 0 0 0 chr3 125588125 125588150 -34011633 + AT_rich Low_complexity Low_complexity 1 25 0 1 1543 339 25 0 0 chr3 125591623 125591663 -34008120 + (TC)n Simple_repeat Simple_repeat 1 40 0 1 1543 1043 182 60 37 chr3 125591664 125591881 -34007902 - MTC LTR MaLR -57 364 143 1 1543 222 37 0 0 chr3 125591881 125591908 -34007875 + (TTC)n Simple_repeat Simple_repeat 2 28 0 1 1543 507 121 0 11 chr3 125591913 125592005 -34007778 - L1_Mus3 LINE L1 -12 6626 6536 1 1543 225 0 0 0 chr3 125592043 125592068 -34007715 + (T)n Simple_repeat Simple_repeat 1 25 0 1 1543 298 275 139 44 chr3 125592716 125592906 -34006877 + B3 SINE B2 10 216 0 1 1543 297 348 25 67 chr3 125593259 125593379 -34006404 - PB1D10 SINE Alu 0 117 3 1 1543 4203 108 11 2 chr3 125593471 125594093 -34005690 + L1_Mus3 LINE L1 6005 6632 -6 1 1543 24 0 0 0 chr3 125594562 125594586 -34005197 + AT_rich Low_complexity Low_complexity 1 24 0 1 1543 239 71 24 0 chr3 125594625 125594667 -34005116 + (TTTTG)n Simple_repeat Simple_repeat 4 46 0 1 1543 730 104 0 0 chr3 125594667 125594773 -34005010 - B2_Mm2 SINE B2 -88 107 2 1 1543 21 0 0 0 chr3 125595087 125595108 -34004675 + AT_rich Low_complexity Low_complexity 1 21 0 1 1543 23 0 0 0 chr3 125595855 125595878 -34003905 + AT_rich Low_complexity Low_complexity 1 23 0 1 1543 2694 68 35 0 chr3 125596329 125596696 -34003087 - L1_Mus3 LINE L1 -5 6633 6254 1 1543 1305 87 0 0 chr3 125596696 125596869 -34002914 + L1_Mus3 LINE L1 6079 6251 -387 1 1543 27 0 0 0 chr3 125597421 125597448 -34002335 + AT_rich Low_complexity Low_complexity 1 27 0 1 1543 210 284 40 120 chr3 125597828 125597928 -34001855 + L2c LINE L2 3287 3378 -9 1 1543 904 207 32 69 chr3 125598427 125598878 -34000905 + RMER17C LTR ERVK 77 435 -523 1 1543 22 80 0 0 chr3 125599380 125599430 -34000353 + AT_rich Low_complexity Low_complexity 1 50 0 1 1543 494 222 205 0 chr3 125599708 125599879 -33999904 + B3 SINE B2 1 206 -10 1 1543 939 301 18 56 chr3 125600024 125600418 -33999365 + MTEa LTR MaLR 1 379 0 1 1543 21 36 0 0 chr3 125602749 125602777 -33997006 + AT_rich Low_complexity Low_complexity 1 28 0 1 1543 25 0 0 0 chr3 125602878 125602903 -33996880 + AT_rich Low_complexity Low_complexity 1 25 0 1 1543 448 290 33 22 chr3 125603237 125603265 -33996518 + CYRA11_Mm Unknown Y-chromosome 145 322 -291 1 1543 918 135 14 0 chr3 125603265 125603413 -33996370 - URR1A DNA MER1_type -1 225 76 1 1543 1163 243 41 22 chr3 125603436 125603849 -33995934 - L1_Rod LINE L1 -3014 2833 2413 1 1543 4909 54 0 5 chr3 125603869 125604487 -33995296 + L1Md_F2 LINE L1 5955 6569 -13 1 1543 30 77 0 0 chr3 125604487 125604552 -33995231 + AT_rich Low_complexity Low_complexity 1 65 0 1 1543 189 0 0 0 chr3 125604635 125604656 -33995127 + (CA)n Simple_repeat Simple_repeat 2 22 0 1 1543 353 308 58 0 chr3 125605169 125605273 -33994510 + B1F SINE Alu 1 110 -39 1 1543 35319 36 0 0 chr3 125605721 125610839 -33988944 + L1Md_T LINE L1 375 5589 -297 1 1543 8940 5 0 3 chr3 125610839 125611907 -33987876 + L1Md_T LINE L1 5590 6585 0 1 1543 310 231 0 84 chr3 125615609 125615680 -33984103 + B3 SINE B2 11 75 -141 1 1543 299 208 0 0 chr3 125615696 125615749 -33984034 + B3 SINE B2 155 207 -9 1 1543 684 56 0 0 chr3 125620174 125620263 -33979520 + (GGA)n Simple_repeat Simple_repeat 2 90 0 1 1543 330 45 0 0 chr3 125620531 125620575 -33979208 + (CA)n Simple_repeat Simple_repeat 2 45 0 1 1543 216 97 0 0 chr3 125620592 125620623 -33979160 + (GGGA)n Simple_repeat Simple_repeat 3 33 0 1 1543 405 0 0 0 chr3 125622278 125622323 -33977460 + (TTTTG)n Simple_repeat Simple_repeat 2 46 0 1 1543 2453 45 0 6 chr3 125622344 125622656 -33977127 - L1Md_F2 LINE L1 0 6582 6273 1 1543 333 0 0 0 chr3 125623145 125623182 -33976601 + (TA)n Simple_repeat Simple_repeat 2 38 0 1 1543 891 75 0 0 chr3 125624239 125624359 -33975424 + (TC)n Simple_repeat Simple_repeat 1 120 0 1 1543 216 0 0 0 chr3 125624359 125624382 -33975401 + (CA)n Simple_repeat Simple_repeat 1 24 0 1 1543 839 233 14 38 chr3 125624625 125624835 -33974948 + B3 SINE B2 2 206 -10 1 1543 28 0 0 0 chr3 125624835 125624863 -33974920 + AT_rich Low_complexity Low_complexity 1 28 0 1 1543 195 42 0 0 chr3 125625215 125625239 -33974544 + (T)n Simple_repeat Simple_repeat 1 24 0 1 1543 1084 76 14 0 chr3 125625239 125625384 -33974399 - B1_Mus1 SINE Alu 0 148 2 1 1543 235 348 11 32 chr3 125627270 125627365 -33972418 - MER5A1 DNA MER1_type -46 120 28 1 1543 627 185 100 0 chr3 125627742 125627872 -33971911 - B1_Mur3 SINE Alu -2 147 5 1 1543 259 73 0 52 chr3 125628111 125628169 -33971614 + L1Md_F2 LINE L1 6528 6582 0 1 1543 344 350 57 6 chr3 125628273 125628431 -33971352 - MER5A DNA MER1_type -23 166 1 1 1543 384 71 0 0 chr3 125628546 125628602 -33971181 + (CA)n Simple_repeat Simple_repeat 1 56 0 1 1543 414 0 0 0 chr3 125629101 125629147 -33970636 + (TCTA)n Simple_repeat Simple_repeat 1 46 0 1 1543 200 184 41 0 chr3 125629864 125629913 -33969870 + (TA)n Simple_repeat Simple_repeat 2 52 0 1 1543 284 48 24 0 chr3 125629917 125629959 -33969824 + (TATG)n Simple_repeat Simple_repeat 2 44 0 1 1543 2246 288 73 13 chr3 125630320 125631294 -33968489 - Lx8 LINE L1 -144 7329 6285 1 1543 225 211 0 0 chr3 125632296 125632334 -33967449 + ID4_ SINE ID 5 42 -41 1 1543 1005 102 0 0 chr3 125632351 125632508 -33967275 + (TC)n Simple_repeat Simple_repeat 2 158 0 1 1543 363 239 42 50 chr3 125633509 125633628 -33966155 + ID_B1 SINE B4 103 220 -4 1 1543 502 41 0 27 chr3 125634818 125634893 -33964890 + (TG)n Simple_repeat Simple_repeat 2 74 0 1 1543 374 307 62 185 chr3 125634903 125635211 -33964572 - B4 SINE B4 -18 274 5 1 1543 21 36 0 0 chr3 125636166 125636194 -33963589 + AT_rich Low_complexity Low_complexity 1 28 0 1 1543 239 258 75 85 chr3 125637002 125637108 -33962675 - MIR SINE MIR -38 224 120 1 1543 306 0 0 0 chr3 125638852 125638886 -33960897 + (A)n Simple_repeat Simple_repeat 1 34 0 1 1543 432 0 0 0 chr3 125639140 125639188 -33960595 + (CATA)n Simple_repeat Simple_repeat 4 51 0 1 1543 200 59 29 0 chr3 125640059 125640093 -33959690 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 1 1543 211 224 0 62 chr3 125640893 125640974 -33958809 + (CCCCG)n Simple_repeat Simple_repeat 3 78 0 1 1543 27 0 0 0 chr3 125641563 125641590 -33958193 + GC_rich Low_complexity Low_complexity 1 27 0 1 1543 211 254 0 0 chr3 125641623 125641682 -33958101 + C-rich Low_complexity Low_complexity 4 62 0 1 1543 492 62 0 0 chr3 125642325 125642389 -33957394 + (CATA)n Simple_repeat Simple_repeat 4 67 0 1 1543 245 51 0 25 chr3 125642532 125642572 -33957211 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 1 1543 23 33 0 0 chr3 125642719 125642749 -33957034 + AT_rich Low_complexity Low_complexity 1 30 0 1 1543 294 272 47 109 chr3 125643298 125643426 -33956357 - RMER10B LTR ERVL 0 398 279 1 1543 669 232 19 157 chr3 125643955 125644165 -33955618 + B3A SINE B2 2 197 -1 1 1543 373 225 0 0 chr3 125644345 125644416 -33955367 - ID4 SINE ID -10 73 3 2 1543 21 36 0 0 chr3 125644729 125644757 -33955026 + AT_rich Low_complexity Low_complexity 1 28 0 2 1543 360 155 0 0 chr3 125645315 125645373 -33954410 - B1_Mur4 SINE Alu -8 142 85 2 1543 495 279 43 48 chr3 125645375 125645582 -33954201 - B3 SINE B2 0 216 11 2 1543 519 123 0 0 chr3 125646008 125646089 -33953694 + (GA)n Simple_repeat Simple_repeat 2 82 0 2 1543 21 36 0 0 chr3 125647016 125647044 -33952739 + AT_rich Low_complexity Low_complexity 1 28 0 2 1543 514 344 5 25 chr3 125648451 125648648 -33951135 + B3A SINE B2 5 197 -1 2 1543 7799 165 15 25 chr3 125648871 125649179 -33950604 + L1_Mus4 LINE L1 4429 4733 -1150 2 1543 216 0 0 0 chr3 125649179 125649203 -33950580 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 2 1543 7799 137 16 13 chr3 125649203 125651101 -33948682 + L1_Mus4 LINE L1 4734 6635 -1 2 1543 213 39 0 0 chr3 125652901 125652927 -33946856 + (CA)n Simple_repeat Simple_repeat 1 26 0 2 1543 621 100 0 0 chr3 125652927 125653016 -33946767 + (TA)n Simple_repeat Simple_repeat 2 91 0 2 1543 374 289 48 53 chr3 125653354 125653562 -33946221 - RLTR42-int LTR ERVK -4150 1372 1166 2 1543 506 297 101 29 chr3 125653812 125654020 -33945763 + B4A SINE B4 4 226 -66 2 1543 207 0 0 0 chr3 125654213 125654236 -33945547 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 2 1543 195 129 0 0 chr3 125654990 125655021 -33944762 + (CAGA)n Simple_repeat Simple_repeat 2 32 0 2 1543 224 206 0 45 chr3 125655021 125655087 -33944696 + (TAGA)n Simple_repeat Simple_repeat 1 63 0 2 1543 264 59 0 0 chr3 125655088 125655122 -33944661 + (CATA)n Simple_repeat Simple_repeat 3 36 0 2 1543 374 173 36 24 chr3 125655550 125655633 -33944150 - MTD LTR MaLR 0 419 336 2 1543 590 276 18 18 chr3 125655634 125655800 -33943983 - MTD LTR MaLR -253 166 1 2 1543 557 301 88 25 chr3 125655807 125655967 -33943816 - B4 SINE B4 0 292 123 2 1543 405 70 0 0 chr3 125656522 125656579 -33943204 + (TAAA)n Simple_repeat Simple_repeat 3 59 0 2 1543 819 101 0 0 chr3 125656821 125656940 -33942843 + (TTCC)n Simple_repeat Simple_repeat 4 122 0 2 1543 414 0 0 0 chr3 125656940 125656986 -33942797 + (TC)n Simple_repeat Simple_repeat 2 47 0 2 1543 351 0 0 0 chr3 125657290 125657329 -33942454 + (CA)n Simple_repeat Simple_repeat 2 40 0 2 1543 447 19 0 0 chr3 125657329 125657380 -33942403 + (GA)n Simple_repeat Simple_repeat 2 53 0 2 1543 374 327 23 58 chr3 125657591 125657763 -33942020 - MLT2B3 LTR ERVL -385 169 4 2 1543 1317 137 98 8 chr3 125658286 125658522 -33941261 - Lx2 LINE L1 0 6997 6741 2 1543 478 167 0 12 chr3 125658530 125658615 -33941168 - MTC LTR MaLR -337 84 1 2 1543 2753 169 37 16 chr3 125658967 125659391 -33940392 + RLTR28 LTR ERVL 1 441 -83 2 1543 2427 68 68 0 chr3 125659391 125659715 -33940068 - ORR1A1 LTR MaLR 0 346 1 2 1543 2753 169 37 16 chr3 125659715 125659801 -33939982 + RLTR28 LTR ERVL 442 522 -2 2 1543 237 65 0 0 chr3 125662107 125662138 -33937645 + (T)n Simple_repeat Simple_repeat 1 31 0 2 1543 41113 6 0 1 chr3 125662162 125668950 -33930833 - L1Md_A LINE L1 0 6582 1 2 1543 421 277 0 35 chr3 125669471 125669587 -33930196 + PB1D9 SINE Alu 3 114 -6 2 1543 289 330 35 35 chr3 125670945 125671061 -33928722 - Cheshire DNA MER1_type -2303 117 2 2 1543 193 357 49 21 chr3 125671091 125671234 -33928549 - L2a LINE L2 -320 3106 2960 2 1543 542 267 178 29 chr3 125671681 125671805 -33927978 - Lx9 LINE L1 -7 7637 7515 2 1543 387 0 0 0 chr3 125671805 125671848 -33927935 + (TG)n Simple_repeat Simple_repeat 1 43 0 2 1543 542 267 178 29 chr3 125671848 125672032 -33927751 - Lx9 LINE L1 -130 7514 7285 2 1543 207 0 0 0 chr3 125672714 125672737 -33927046 + (CA)n Simple_repeat Simple_repeat 2 24 0 2 1543 21 0 0 0 chr3 125672907 125672928 -33926855 + AT_rich Low_complexity Low_complexity 1 21 0 2 1543 1314 279 10 13 chr3 125673920 125674229 -33925554 + MTEb LTR MaLR 69 376 -3 2 1543 743 309 90 28 chr3 125674235 125674667 -33925116 - L1MA9 LINE L1 -184 6128 5670 2 1543 217 266 59 50 chr3 125674673 125674792 -33924991 - PB1D7 SINE Alu 0 148 27 2 1543 626 249 52 36 chr3 125674901 125675151 -33924632 - L1MA9 LINE L1 -736 5555 5302 2 1543 219 69 0 0 chr3 125675171 125675200 -33924583 + (TG)n Simple_repeat Simple_repeat 2 30 0 2 1543 236 347 14 0 chr3 125675217 125675289 -33924494 - RSINE1 SINE B4 -8 157 85 2 1543 672 284 103 42 chr3 125675364 125675838 -33923945 - L1MA9 LINE L1 -2309 3831 3329 2 1543 549 324 45 0 chr3 125675838 125676014 -33923769 - B3 SINE B2 -4 212 29 2 1543 359 273 207 27 chr3 125676052 125676599 -33923184 - L1MA9 LINE L1 -2848 3295 2651 2 1543 6271 122 18 19 chr3 125676875 125678522 -33921261 - Lx LINE L1 -152 6502 4859 2 1543 651 66 0 71 chr3 125678667 125678765 -33921018 + L1_Mus2 LINE L1 5993 6083 -483 2 1543 210 37 0 0 chr3 125679295 125679322 -33920461 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2 1543 457 319 0 16 chr3 125680581 125680702 -33919081 - B3A SINE B2 0 198 80 2 1543 611 336 134 75 chr3 125680727 125681152 -33918631 + MER70A LTR ERVL 3 452 -20 2 1543 628 321 82 54 chr3 125682321 125682918 -33916865 + Lx8 LINE L1 6820 7464 -9 2 1543 21 71 0 0 chr3 125682919 125682961 -33916822 + AT_rich Low_complexity Low_complexity 1 42 0 2 1543 26 64 0 0 chr3 125683652 125683699 -33916084 + AT_rich Low_complexity Low_complexity 1 47 0 2 1543 560 285 15 0 chr3 125683755 125683885 -33915898 + RSINE1 SINE B4 3 134 -31 2 1543 215 173 19 0 chr3 125683887 125683939 -33915844 + (TAAA)n Simple_repeat Simple_repeat 1 53 0 2 1543 364 367 23 15 chr3 125684004 125684134 -33915649 + RSINE1 SINE B4 2 132 -33 2 1543 1375 192 151 18 chr3 125684232 125684630 -33915153 - Lx9 LINE L1 0 7644 7194 2 1543 2381 300 61 18 chr3 125684749 125685492 -33914291 - Lx7 LINE L1 -495 7201 6427 2 1543 23 33 0 0 chr3 125685974 125686004 -33913779 + AT_rich Low_complexity Low_complexity 1 30 0 2 1543 564 180 25 0 chr3 125686276 125686398 -33913385 + Lx2A1 LINE L1 6880 7004 -4 2 1543 840 361 46 35 chr3 125686429 125686883 -33912900 - MT2A LTR ERVL -74 459 1 2 1543 4222 287 82 43 chr3 125686885 125687839 -33911944 - MTEa-int LTR MaLR -2 1578 579 2 1543 1647 70 4 13 chr3 125687839 125688071 -33911712 + L1Md_F2 LINE L1 6353 6582 0 2 1543 4222 287 82 43 chr3 125688071 125688635 -33911148 - MTEa-int LTR MaLR -1002 578 1 2 1543 995 251 67 67 chr3 125688636 125689012 -33910771 - MTEa LTR MaLR -1 378 3 2 1543 718 242 50 20 chr3 125689343 125689545 -33910238 - RLTR11A2 LTR ERVK -301 226 19 2 1543 27 29 0 0 chr3 125691042 125691076 -33908707 + AT_rich Low_complexity Low_complexity 1 34 0 2 1543 22 35 0 0 chr3 125691434 125691463 -33908320 + AT_rich Low_complexity Low_complexity 1 29 0 2 1543 345 381 75 0 chr3 125691621 125691768 -33908015 - RSINE1 SINE B4 0 165 8 2 1543 746 298 100 74 chr3 125691842 125692222 -33907561 - MER73 LTR ERVL 0 644 255 2 1543 408 179 0 0 chr3 125692700 125692778 -33907005 + (TA)n Simple_repeat Simple_repeat 2 79 0 2 1543 682 278 5 30 chr3 125693755 125693955 -33905828 + B3A SINE B2 3 197 -1 2 1543 6572 92 3 102 chr3 125694434 125695593 -33904190 - L1_Mur1 LINE L1 -313 5573 4530 2 1543 4241 244 50 86 chr3 125695597 125695881 -33903902 + Lx9 LINE L1 4098 4372 -1475 2 1543 257 51 0 25 chr3 125695881 125695921 -33903862 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 2 1543 4241 244 50 86 chr3 125695921 125696872 -33902911 + Lx9 LINE L1 4373 5311 -536 2 1543 1616 20 0 15 chr3 125696872 125697073 -33902710 + L1Md_F3 LINE L1 6385 6582 -2 2 1543 4241 272 86 59 chr3 125697073 125697181 -33902602 + Lx9 LINE L1 5312 5427 -2217 2 1543 318 104 0 20 chr3 125697181 125697230 -33902553 + B1_Mur4 SINE Alu 103 150 0 2 192 4241 272 86 59 chr3 125697230 125698714 -33901069 + Lx9 LINE L1 5428 7026 -618 2 1544 522 0 0 0 chr3 125698714 125698772 -33901011 + (GA)n Simple_repeat Simple_repeat 2 59 0 2 1544 2944 284 183 57 chr3 125698772 125699169 -33900614 + Lx9 LINE L1 7027 7459 -185 2 1544 720 244 117 42 chr3 125699166 125699282 -33900501 - L1_Mur3 LINE L1 -490 5390 5273 2 1544 470 17 17 0 chr3 125699282 125699341 -33900442 + (TC)n Simple_repeat Simple_repeat 1 60 0 2 1544 279 0 0 0 chr3 125699341 125699371 -33900412 + (CA)n Simple_repeat Simple_repeat 1 31 0 2 1544 720 244 117 42 chr3 125699371 125699587 -33900196 - L1_Mur3 LINE L1 -608 5272 5033 2 1544 684 253 39 27 chr3 125699686 125699936 -33899847 - L1MA8 LINE L1 -203 6088 5831 2 1544 1392 269 54 8 chr3 125700189 125700575 -33899208 + MTD LTR MaLR 1 404 -15 2 1544 700 278 41 30 chr3 125700719 125700990 -33898793 + L1MC LINE L1 4523 4796 -1350 2 1544 454 306 82 41 chr3 125700986 125701303 -33898480 + L1MC LINE L1 5423 5752 -581 2 1544 1042 332 74 37 chr3 125701312 125701910 -33897873 + MER73 LTR ERVL 14 633 -11 2 1544 218 32 32 0 chr3 125701958 125701989 -33897794 + (CAA)n Simple_repeat Simple_repeat 2 33 0 2 1544 594 309 0 93 chr3 125702276 125702490 -33897293 + B3A SINE B2 3 196 -2 2 1544 32 43 0 0 chr3 125702490 125702536 -33897247 + AT_rich Low_complexity Low_complexity 1 46 0 2 1544 802 206 239 25 chr3 125702619 125702858 -33896925 + Lx5 LINE L1 6761 7050 0 2 1544 262 258 73 31 chr3 125703566 125703662 -33896121 + Tigger5 DNA MER2_type 2281 2380 -26 2 1544 3354 41 5 0 chr3 125704117 125704528 -33895255 + L1Md_F2 LINE L1 6170 6582 0 2 1544 1140 247 214 15 chr3 125704564 125705156 -33894627 + Lx6 LINE L1 6759 7452 -8 2 1544 28 29 0 0 chr3 125705442 125705477 -33894306 + AT_rich Low_complexity Low_complexity 1 35 0 2 1544 7027 103 22 19 chr3 125705487 125705604 -33894179 - Lx LINE L1 0 6654 6538 2 1544 243 0 0 0 chr3 125705604 125705631 -33894152 + (CCCA)n Simple_repeat Simple_repeat 3 29 0 2 1544 7027 106 24 21 chr3 125705631 125706629 -33893154 - Lx LINE L1 -117 6537 5519 2 1544 225 302 85 17 chr3 125706762 125706880 -33892903 - RLTR13C2 LTR ERVK -43 765 640 2 1544 22 80 0 0 chr3 125707157 125707207 -33892576 + AT_rich Low_complexity Low_complexity 1 50 0 2 1544 246 188 225 45 chr3 125707533 125707622 -33892161 - RLTR13D3 LTR ERVK -1009 105 1 2 1544 58 28 0 0 chr3 125710474 125710546 -33889237 + AT_rich Low_complexity Low_complexity 1 72 0 2 1544 666 172 0 22 chr3 125710568 125710752 -33889031 + (TAG)n Simple_repeat Simple_repeat 1 180 0 2 1544 528 375 10 15 chr3 125712120 125712315 -33887468 + ID_B1 SINE B4 2 195 -29 2 1544 441 0 0 0 chr3 125712315 125712364 -33887419 + (TAA)n Simple_repeat Simple_repeat 3 51 0 2 1544 340 224 40 0 chr3 125712950 125713026 -33886757 + B1F SINE Alu 51 129 -20 2 1544 189 0 0 0 chr3 125714002 125714023 -33885760 + (TG)n Simple_repeat Simple_repeat 2 22 0 3 1544 474 18 0 0 chr3 125714024 125714079 -33885704 + (GA)n Simple_repeat Simple_repeat 2 56 0 3 1544 262 318 47 0 chr3 125714118 125714203 -33885580 + MLT1D LTR MaLR 3 91 -414 3 1544 408 40 0 0 chr3 125714225 125714275 -33885508 + (TA)n Simple_repeat Simple_repeat 2 51 0 3 1544 1017 297 34 0 chr3 125714331 125714600 -33885183 + ORR1D2 LTR MaLR 24 301 -69 3 1544 186 43 0 0 chr3 125714894 125714917 -33884866 + (TTTG)n Simple_repeat Simple_repeat 1 23 0 3 1544 740 202 0 0 chr3 125714917 125715046 -33884737 - B1_Mus1 SINE Alu -13 135 7 3 1544 360 299 36 48 chr3 125715046 125715082 -33884701 - ID_B1 SINE B4 -13 211 49 3 1544 1692 269 58 61 chr3 125715129 125715866 -33883917 + RLTR40 LTR ERVK 1 735 -82 3 1544 281 236 0 0 chr3 125715871 125715926 -33883857 + B4 SINE B4 169 223 -69 3 1544 234 0 0 0 chr3 125715931 125715957 -33883826 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 3 1544 525 82 0 58 chr3 125716223 125716327 -33883456 + Lx2 LINE L1 6900 6997 0 3 1544 278 280 98 20 chr3 125716336 125716438 -33883345 + B2_Mm2 SINE B2 27 136 -59 3 1544 803 167 62 22 chr3 125716612 125716790 -33882993 + B2_Mm2 SINE B2 2 186 -9 3 1544 360 0 0 0 chr3 125717752 125717792 -33881991 + (TG)n Simple_repeat Simple_repeat 2 41 0 3 1544 880 266 19 0 chr3 125717852 125718059 -33881724 - Lx9 LINE L1 -195 7449 7239 3 1544 491 231 29 9 chr3 125718060 125718165 -33881618 + Lx9 LINE L1 6603 6709 -935 3 1544 477 217 31 25 chr3 125718158 125718319 -33881464 + Lx9 LINE L1 7483 7644 0 3 1544 2562 214 119 58 chr3 125718830 125719948 -33879835 + RLTR25B LTR ERVK 1 1103 0 3 1544 676 274 132 8 chr3 125720291 125720627 -33879156 + L1ME1 LINE L1 5514 5881 -281 3 1544 290 276 152 10 chr3 125721449 125721548 -33878235 - B1F1 SINE Alu -10 139 27 3 1544 549 291 30 69 chr3 125722368 125722571 -33877212 - Lx8 LINE L1 -146 7327 7133 3 1544 280 308 100 53 chr3 125722677 125722917 -33876866 + L1MEf LINE L1 800 1052 -5148 3 1544 444 67 0 0 chr3 125722917 125722977 -33876806 + (CA)n Simple_repeat Simple_repeat 1 60 0 3 1544 280 308 100 53 chr3 125722977 125723076 -33876707 + L1MEf LINE L1 1053 1155 -5045 3 1544 470 145 12 12 chr3 125723253 125723328 -33876455 + B1_Mus2 SINE Alu 63 138 -9 3 1544 184 54 26 51 chr3 125723328 125723367 -33876416 + (CAA)n Simple_repeat Simple_repeat 2 39 0 3 1544 411 38 0 0 chr3 125723379 125723432 -33876351 + (CAAAC)n Simple_repeat Simple_repeat 2 54 0 3 1544 502 331 13 26 chr3 125723657 125723809 -33875974 - B4 SINE B4 -4 288 139 3 1544 525 16 0 0 chr3 125723882 125723944 -33875839 + (CA)n Simple_repeat Simple_repeat 1 62 0 3 1544 4148 130 33 20 chr3 125724013 125724705 -33875078 - Lx LINE L1 -9 6645 5945 3 1544 5419 119 38 17 chr3 125724706 125726085 -33873698 - L1VL2 LINE L1 -2110 1505 88 3 1544 283 333 103 7 chr3 125726797 125726942 -33872841 + MER2 DNA MER2_type 186 344 -1 3 1544 618 307 7 0 chr3 125727207 125727347 -33872436 + RSINE1 SINE B4 10 150 -15 3 1544 27 29 0 0 chr3 125727360 125727394 -33872389 + AT_rich Low_complexity Low_complexity 1 34 0 3 1544 4849 109 21 12 chr3 125728020 125728747 -33871036 + Lx LINE L1 5914 6646 -8 3 1544 558 294 0 7 chr3 125728832 125728969 -33870814 - B1_Mur1 SINE Alu -1 148 13 3 1544 2674 223 63 123 chr3 125729175 125729933 -33869850 + RMER1B Other Other 5 717 -349 3 1544 797 200 82 0 chr3 125729936 125730106 -33869677 + RMER1A Other Other 842 1025 -5 3 1544 2472 183 29 118 chr3 125730185 125730940 -33868843 + RMER6C LTR ERVK 3 690 0 3 1544 1811 274 112 27 chr3 125731031 125731730 -33868053 - Lx9 LINE L1 -355 7289 6532 3 1544 235 375 0 0 chr3 125731739 125731843 -33867940 - PB1D7 SINE Alu -16 104 1 3 1544 249 329 92 8 chr3 125731844 125732083 -33867700 + L1M2 LINE L1 4097 4355 -1788 3 1544 675 345 43 38 chr3 125732096 125732466 -33867317 + Lx8 LINE L1 6889 7260 -213 3 1544 555 222 96 34 chr3 125732611 125732788 -33866995 + RLTR40 LTR ERVK 482 669 -148 3 1544 516 152 0 10 chr3 125732760 125732860 -33866923 + RLTR40 LTR ERVK 584 682 -135 3 1544 861 94 123 0 chr3 125732902 125733040 -33866743 - L1_Mus2 LINE L1 0 6566 6412 3 1544 2854 9 0 0 chr3 125733040 125733362 -33866421 + RLTRETN_Mm LTR ERVK 1 322 0 3 1544 42300 15 3 3 chr3 125733362 125738206 -33861577 + MMETn-int LTR ERVK 1 4844 0 3 1544 2856 12 0 0 chr3 125738206 125738528 -33861255 + RLTRETN_Mm LTR ERVK 1 322 0 3 1544 1771 81 52 4 chr3 125738528 125738777 -33861006 - L1_Mus2 LINE L1 -149 6417 6157 3 1544 514 176 10 19 chr3 125738784 125738888 -33860895 + RLTR40 LTR ERVK 708 810 -7 3 1544 260 370 30 10 chr3 125738963 125739064 -33860719 + ID_B1 SINE B4 91 193 -31 3 1544 387 0 0 0 chr3 125739479 125739522 -33860261 + (GA)n Simple_repeat Simple_repeat 2 44 0 3 1544 1130 223 0 9 chr3 125740483 125740696 -33859087 + MTC LTR MaLR 211 421 0 3 1544 746 259 96 0 chr3 125740918 125741115 -33858668 + B3 SINE B2 1 216 0 3 1544 853 333 101 16 chr3 125741278 125741705 -33858078 - MLT1C LTR MaLR -4 463 1 3 1544 237 389 26 0 chr3 125741709 125741822 -33857961 - MLT1E1A LTR MaLR -204 476 361 3 1544 253 234 16 0 chr3 125741959 125742023 -33857760 + MLT1C LTR MaLR 72 136 -331 3 1544 848 326 26 11 chr3 125742035 125742299 -33857484 + MLT1C LTR MaLR 200 467 0 3 1544 1375 170 163 72 chr3 125743075 125743436 -33856347 + ORR1B1 LTR MaLR 1 394 0 3 1544 383 333 16 8 chr3 125743438 125743562 -33856221 + LTR16A1 LTR ERVL 1 125 -331 3 1544 21 0 0 0 chr3 125743620 125743641 -33856142 + AT_rich Low_complexity Low_complexity 1 21 0 3 1544 944 282 4 27 chr3 125744307 125744566 -33855217 + RLTR18B LTR ERVK 259 511 -1 3 1544 558 75 0 0 chr3 125745939 125746019 -33853764 + (TG)n Simple_repeat Simple_repeat 2 81 0 3 1544 597 40 0 0 chr3 125746077 125746153 -33853630 + (TG)n Simple_repeat Simple_repeat 2 77 0 3 1544 276 30 0 0 chr3 125746630 125746663 -33853120 + (TG)n Simple_repeat Simple_repeat 2 34 0 3 1544 386 338 55 0 chr3 125746669 125746814 -33852969 - RSINE1 SINE B4 -8 157 5 3 1544 265 269 15 0 chr3 125746886 125746953 -33852830 - B1F2 SINE Alu -81 68 1 3 1544 437 0 0 19 chr3 125747117 125747171 -33852612 + (TG)n Simple_repeat Simple_repeat 1 53 0 3 1544 432 0 0 0 chr3 125747171 125747218 -33852565 + (GA)n Simple_repeat Simple_repeat 1 48 0 3 1544 656 194 76 35 chr3 125747311 125747455 -33852328 + B3A SINE B2 3 152 -46 3 1544 22 35 0 0 chr3 125748421 125748450 -33851333 + AT_rich Low_complexity Low_complexity 1 29 0 3 1544 528 245 117 25 chr3 125748459 125748656 -33851127 + Lx8 LINE L1 7259 7473 0 3 1544 383 319 40 103 chr3 125748904 125749205 -33850578 + MLT1F2 LTR MaLR 67 348 -212 3 1544 688 303 94 9 chr3 125749717 125749950 -33849833 - B4A SINE B4 -6 286 34 3 1544 533 271 45 50 chr3 125750921 125751119 -33848664 + MLT1A0 LTR MaLR 159 355 -10 3 1544 264 257 0 54 chr3 125751700 125751774 -33848009 + Charlie12 DNA MER1_type 2804 2873 0 3 1544 888 187 49 38 chr3 125751807 125752074 -33847709 - L1_Rod LINE L1 -4041 1806 1537 3 1544 489 180 82 90 chr3 125752074 125752208 -33847575 - RMER12 LTR ERVK -800 522 390 3 1544 1474 176 69 13 chr3 125752229 125752534 -33847249 - RMER12 LTR ERVK -1000 322 1 3 1544 556 195 78 8 chr3 125752961 125753090 -33846693 + RLTR11A2 LTR ERVK 390 527 0 3 1544 3013 60 0 3 chr3 125753113 125753498 -33846285 - L1_Mus1 LINE L1 -1 6566 6183 3 1544 4026 73 2 0 chr3 125753498 125754017 -33845766 + L1_Mm LINE L1 5268 5787 -96 3 1544 566 311 84 14 chr3 125755073 125755288 -33844495 - MLT1A1 LTR MaLR -58 350 121 3 1544 864 131 28 0 chr3 125755658 125755803 -33843980 + URR1A DNA MER1_type 78 226 0 3 1544 342 296 12 12 chr3 125756467 125756628 -33843155 + (CATA)n Simple_repeat Simple_repeat 2 162 0 3 1544 207 348 25 0 chr3 125756682 125756843 -33842940 + (CAGA)n Simple_repeat Simple_repeat 2 166 0 3 1544 275 269 13 0 chr3 125756686 125756764 -33843019 + (CA)n Simple_repeat Simple_repeat 2 80 0 3 1544 383 304 85 50 chr3 125757292 125757493 -33842290 - MER3 DNA MER1_type 0 209 2 3 1544 1279 67 9 0 chr3 125757968 125758189 -33841594 + (GGATG)n Simple_repeat Simple_repeat 1 222 0 3 1544 1050 116 0 0 chr3 125759757 125759903 -33839880 - B1_Mus2 SINE Alu -1 146 1 3 1544 325 288 104 61 chr3 125759942 125760105 -33839678 + MLT1E3 LTR MaLR 175 344 -280 3 1544 434 248 110 0 chr3 125760339 125760484 -33839299 - Charlie7 DNA MER1_type -271 2341 2181 3 1544 254 278 124 76 chr3 125761144 125761249 -33838534 + PB1D10 SINE Alu 1 110 -7 3 1544 387 335 57 17 chr3 125761701 125761877 -33837906 + Tigger16b DNA Tigger 152 334 -3 3 1544 459 0 0 0 chr3 125761981 125762032 -33837751 + (TAAA)n Simple_repeat Simple_repeat 2 52 0 3 1544 291 325 27 149 chr3 125762223 125762371 -33837412 + ID_B1 SINE B4 94 223 -1 3 1544 2127 162 8 20 chr3 125762382 125762779 -33837004 + ORR1B1 LTR MaLR 1 392 -2 3 1544 527 311 59 46 chr3 125763194 125763554 -33836229 - RLTR9E LTR ERVK 0 409 9 3 1544 40463 15 0 0 chr3 125763706 125769835 -33829948 - L1Md_A LINE L1 -1 6581 451 3 1544 414 273 73 63 chr3 125770891 125771208 -33828575 - Lx7 LINE L1 -3 7693 7374 3 1544 837 165 0 0 chr3 125771222 125771386 -33828397 + GA-rich Low_complexity Low_complexity 2 165 0 3 1544 1833 210 107 48 chr3 125771389 125771873 -33827910 - Lx7 LINE L1 -349 7347 6835 3 1544 21 0 0 0 chr3 125773552 125773573 -33826210 + AT_rich Low_complexity Low_complexity 1 21 0 3 1544 671 44 0 11 chr3 125773610 125773702 -33826081 + (TTTC)n Simple_repeat Simple_repeat 3 93 0 3 1544 221 404 36 40 chr3 125774339 125774561 -33825222 + L2a LINE L2 3043 3263 -163 3 1544 1103 79 0 0 chr3 125776425 125776565 -33823218 + B1_Mm SINE Alu 2 141 -6 3 1544 255 161 0 0 chr3 125776566 125776622 -33823161 + A-rich Low_complexity Low_complexity 1 56 0 3 1544 7426 96 5 21 chr3 125777551 125778770 -33821013 - L1_Mus3 LINE L1 -12 6626 5462 3 1544 898 62 130 15 chr3 125778770 125778901 -33820882 - B1_Mm SINE Alu -1 146 1 3 1544 4845 151 8 62 chr3 125778901 125779355 -33820428 - L1_Mus3 LINE L1 -422 5461 5004 3 1544 4381 40 34 14 chr3 125779372 125779929 -33819854 + L1Md_F2 LINE L1 6015 6582 0 3 1544 1310 186 137 43 chr3 125780825 125781399 -33818384 + RMER6C LTR ERVK 241 720 0 4 1544 228 236 0 0 chr3 125781466 125781521 -33818262 + T-rich Low_complexity Low_complexity 6 60 0 4 1544 186 125 31 0 chr3 125781695 125781727 -33818056 - L3 LINE CR1 -3327 1162 1130 4 1544 207 100 0 0 chr3 125782488 125782518 -33817265 + (TAAAA)n Simple_repeat Simple_repeat 2 31 0 4 1544 1674 159 9 38 chr3 125783070 125783390 -33816393 + RLTR28 LTR ERVL 214 524 0 4 1544 1213 247 93 26 chr3 125783548 125783860 -33815923 + ORR1D2 LTR MaLR 1 333 -37 4 1544 4922 55 0 3 chr3 125786280 125786898 -33812885 - L1Md_F2 LINE L1 0 6582 5967 4 1544 22 0 0 0 chr3 125787114 125787136 -33812647 + AT_rich Low_complexity Low_complexity 1 22 0 4 1544 1052 117 12 0 chr3 125787501 125787672 -33812111 + (TTCTCC)n Simple_repeat Simple_repeat 3 175 0 4 1544 1584 161 137 60 chr3 125787731 125788082 -33811701 + ORR1C1 LTR MaLR 1 378 0 4 1544 434 268 130 39 chr3 125788654 125789200 -33810583 + L1ME1 LINE L1 2805 3399 -2747 4 1544 778 20 0 0 chr3 125789782 125789883 -33809900 + L1Md_T LINE L1 6482 6582 0 4 1544 23 0 0 0 chr3 125789901 125789924 -33809859 + AT_rich Low_complexity Low_complexity 1 23 0 4 1544 414 0 0 0 chr3 125790334 125790380 -33809403 + (CAA)n Simple_repeat Simple_repeat 3 48 0 4 1544 253 305 138 0 chr3 125790510 125790713 -33809070 + L1ME1 LINE L1 4166 4396 -1750 4 1544 313 293 109 49 chr3 125790836 125791019 -33808764 - MLT1A LTR MaLR 0 374 181 4 1544 231 125 118 59 chr3 125791492 125791543 -33808240 - MLT1A LTR MaLR -410 57 4 4 1544 387 371 83 56 chr3 125791767 125792175 -33807608 + L1ME1 LINE L1 5740 6158 -21 4 1544 24 0 0 0 chr3 125792820 125792844 -33806939 + AT_rich Low_complexity Low_complexity 1 24 0 4 1544 21 0 0 0 chr3 125792943 125792964 -33806819 + AT_rich Low_complexity Low_complexity 1 21 0 4 1544 818 219 81 19 chr3 125792983 125793193 -33806590 - MTD LTR MaLR 0 419 197 4 1544 237 200 36 18 chr3 125794318 125794374 -33805409 - MLT1A LTR MaLR -46 328 272 4 1544 228 122 0 0 chr3 125795195 125795236 -33804547 + (CAAAA)n Simple_repeat Simple_repeat 2 42 0 4 1544 1210 220 88 27 chr3 125795450 125795824 -33803959 + Lx9 LINE L1 5311 5707 -140 4 1544 1246 231 167 78 chr3 125795826 125796058 -33803725 - RLTR21 LTR ERVK 0 1572 1306 4 1544 390 74 0 0 chr3 125796058 125796112 -33803671 + (CA)n Simple_repeat Simple_repeat 1 54 0 4 1544 3732 224 297 71 chr3 125796112 125796575 -33803208 - RLTR21 LTR ERVK -267 1305 756 4 1544 828 86 111 13 chr3 125796575 125796728 -33803055 + L1_Mus3 LINE L1 6469 6636 -2 4 1544 3732 185 89 32 chr3 125796728 125797422 -33802361 - RLTR21 LTR ERVK -817 755 17 4 1544 1772 277 88 62 chr3 125797437 125798346 -33801437 + Lx9 LINE L1 5741 6673 -971 4 1544 3469 190 62 24 chr3 125798341 125799166 -33800617 + Lx9 LINE L1 6778 7633 -11 4 1544 371 330 90 55 chr3 125799381 125799727 -33800056 + Lx8 LINE L1 7110 7467 -6 4 1544 288 0 0 0 chr3 125799746 125799778 -33800005 + (TAA)n Simple_repeat Simple_repeat 2 33 0 4 1544 942 244 26 0 chr3 125800640 125800833 -33798950 + B3 SINE B2 12 209 -7 4 1544 464 271 28 7 chr3 125800897 125800984 -33798799 + RMER30 DNA MER1_type 8 96 -106 4 1544 333 0 0 0 chr3 125800984 125801021 -33798762 + (CA)n Simple_repeat Simple_repeat 1 37 0 4 1544 464 271 28 7 chr3 125801021 125801074 -33798709 + RMER30 DNA MER1_type 97 150 -52 4 1544 25 0 0 0 chr3 125801124 125801149 -33798634 + AT_rich Low_complexity Low_complexity 1 25 0 4 1544 437 308 7 29 chr3 125803061 125803198 -33796585 - MLT1A1 LTR MaLR -4 404 271 4 1544 337 317 41 8 chr3 125803256 125803377 -33796406 - MLT1A1 LTR MaLR -281 127 3 4 1544 716 291 15 0 chr3 125803657 125803863 -33795920 - B3 SINE B2 -6 210 2 4 1544 354 61 0 0 chr3 125804447 125804496 -33795287 + (GA)n Simple_repeat Simple_repeat 2 50 0 4 1544 274 346 61 15 chr3 125804665 125804797 -33794986 + MIR SINE MIR 24 161 -101 4 1544 23 54 0 0 chr3 125805313 125805350 -33794433 + AT_rich Low_complexity Low_complexity 1 37 0 4 1544 803 120 20 7 chr3 125805872 125806023 -33793760 - L1_Mus3 LINE L1 0 6638 6486 4 1544 3994 60 0 23 chr3 125807572 125808087 -33791696 - RLTR1C LTR ERV1 0 503 1 4 1544 490 237 172 10 chr3 125809029 125809221 -33790562 + RMER5 LTR ERV1 50 272 -262 4 1544 440 236 48 8 chr3 125809278 125809402 -33790381 + Lx9 LINE L1 7259 7387 -257 4 1544 228 206 211 19 chr3 125809423 125809527 -33790256 + Lx9 LINE L1 7443 7566 -78 4 1544 517 270 91 36 chr3 125809574 125809765 -33790018 + B4 SINE B4 78 282 -10 4 1544 2072 283 54 43 chr3 125809771 125810305 -33789478 + Charlie12 DNA MER1_type 1738 2270 -603 4 1544 2704 25 27 3 chr3 125810305 125810633 -33789150 + L1Md_F3 LINE L1 6247 6582 -2 4 1544 186 43 0 0 chr3 125810637 125810660 -33789123 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 4 1544 2072 283 54 43 chr3 125810660 125810932 -33788851 + Charlie12 DNA MER1_type 2271 2554 -319 4 1544 426 85 0 0 chr3 125810950 125811009 -33788774 + (TG)n Simple_repeat Simple_repeat 2 60 0 4 1544 832 269 66 0 chr3 125811009 125811191 -33788592 - B3 SINE B2 -15 201 8 4 1544 447 292 64 23 chr3 125811230 125811402 -33788381 + Charlie12 DNA MER1_type 2690 2868 -5 4 1544 226 212 0 43 chr3 125811660 125811729 -33788054 - L1MEg LINE L1 -4929 1155 1090 4 1544 20944 100 17 7 chr3 125813156 125817046 -33782737 - Lx3_Mus LINE L1 -474 6535 1419 4 1544 6433 37 0 0 chr3 125817046 125817808 -33781975 + L1Md_T LINE L1 5821 6582 0 4 1544 20944 127 122 1 chr3 125817808 125818669 -33781114 - Lx3_Mus LINE L1 -4468 1418 435 4 1544 828 284 50 81 chr3 125818995 125819355 -33780428 + ORR1E LTR MaLR 4 352 -7 4 1544 332 309 129 8 chr3 125819358 125819482 -33780301 + MLT1E LTR MaLR 464 602 -51 4 1544 419 35 0 17 chr3 125819486 125819544 -33780239 + (TG)n Simple_repeat Simple_repeat 2 58 0 4 1544 515 323 18 18 chr3 125819549 125819713 -33780070 - B3A SINE B2 -32 166 3 4 1544 275 289 65 22 chr3 125819885 125819977 -33779806 + MLT1J LTR MaLR 61 156 -356 4 1544 375 261 53 84 chr3 125820208 125820434 -33779349 + L1ME1 LINE L1 5863 6081 -98 4 1544 24 32 0 0 chr3 125820721 125820752 -33779031 + AT_rich Low_complexity Low_complexity 1 31 0 4 1544 22 35 0 0 chr3 125821564 125821593 -33778190 + AT_rich Low_complexity Low_complexity 1 29 0 4 1544 3679 144 2 7 chr3 125822515 125823152 -33776631 - L1Md_A LINE L1 -5519 1205 607 4 1544 1587 30 0 19 chr3 125823156 125823361 -33776422 + L1Md_F3 LINE L1 6384 6584 0 4 1544 21 57 0 0 chr3 125823700 125823735 -33776048 + AT_rich Low_complexity Low_complexity 1 35 0 4 1544 475 270 34 22 chr3 125824300 125824478 -33775305 - L1MB4 LINE L1 -220 5960 5781 4 1544 778 207 22 0 chr3 125824492 125824769 -33775014 + GA-rich Low_complexity Low_complexity 1 283 0 4 1544 356 351 68 45 chr3 125826553 125826918 -33772865 + MLT1D LTR MaLR 50 480 -25 4 1544 252 0 0 0 chr3 125827339 125827367 -33772416 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 4 1544 1045 89 0 0 chr3 125827367 125827502 -33772281 - B1_Mus2 SINE Alu -12 135 1 4 1544 1067 117 17 0 chr3 125828171 125828351 -33771432 + L1_Mus4 LINE L1 6454 6636 0 4 1544 225 0 0 0 chr3 125828373 125828398 -33771385 + (GA)n Simple_repeat Simple_repeat 2 26 0 4 1544 3297 24 37 0 chr3 125828529 125828911 -33770872 - MTA_Mm LTR MaLR 0 396 1 4 1545 454 275 9 9 chr3 125829674 125829784 -33769999 - PB1D10 SINE Alu 0 117 8 4 1545 395 313 0 0 chr3 125829695 125829794 -33769989 - ID_B1 SINE B4 -47 177 79 4 1545 485 143 0 0 chr3 125830197 125830267 -33769516 + Lx9 LINE L1 7323 7392 -252 4 1545 2213 108 12 24 chr3 125830296 125830637 -33769146 + IAPLTR1a_Mm LTR ERVK 1 337 0 4 1545 20327 47 65 14 chr3 125830637 125833270 -33766513 + IAPEz-int LTR ERVK 8 2774 -3707 4 1545 2943 25 0 0 chr3 125833268 125833625 -33766158 + IAPEz-int LTR ERVK 4001 4357 -2124 4 1545 5828 52 12 12 chr3 125833616 125834387 -33765396 + IAPEz-int LTR ERVK 5709 6479 -2 4 1545 2230 108 12 24 chr3 125834389 125834730 -33765053 + IAPLTR1a_Mm LTR ERVK 1 337 0 4 1545 19322 49 65 14 chr3 125834730 125837363 -33762420 + IAPEz-int LTR ERVK 8 2774 -3707 4 1545 2943 25 0 0 chr3 125837361 125837718 -33762065 + IAPEz-int LTR ERVK 4001 4357 -2124 4 1545 5828 52 12 12 chr3 125837709 125838480 -33761303 + IAPEz-int LTR ERVK 5709 6479 -2 4 1545 2216 105 15 24 chr3 125838482 125838822 -33760961 + IAPLTR1a_Mm LTR ERVK 1 337 0 4 1545 704 138 142 11 chr3 125838822 125839012 -33760771 + Lx9 LINE L1 7428 7642 -2 4 1545 281 333 48 0 chr3 125839924 125840029 -33759754 - MER5A DNA MER1_type -5 184 75 4 1545 9757 75 11 3 chr3 125840036 125842092 -33757691 - L1Md_F2 LINE L1 -12 6570 4500 4 1545 3652 72 0 0 chr3 125842090 125842605 -33757178 + L1Md_F2 LINE L1 3934 4448 -1435 4 1545 6198 64 5 2 chr3 125842685 125843674 -33756109 - L1Md_A LINE L1 -4450 1433 441 4 1545 29 0 0 0 chr3 125843854 125843883 -33755900 + AT_rich Low_complexity Low_complexity 1 29 0 4 1545 27 0 0 0 chr3 125843926 125843953 -33755830 + AT_rich Low_complexity Low_complexity 1 27 0 4 1545 1808 71 19 19 chr3 125843977 125844234 -33755549 + L1_Mus2 LINE L1 6307 6563 -3 4 1545 2364 225 12 65 chr3 125844282 125844886 -33754897 - RMER15 LTR ERVL 0 575 4 4 1545 302 315 31 0 chr3 125845191 125845321 -33754462 + Lx9 LINE L1 7340 7473 -171 4 1545 21 57 0 0 chr3 125845512 125845547 -33754236 + AT_rich Low_complexity Low_complexity 1 35 0 4 1545 1016 144 12 0 chr3 125847120 125847287 -33752496 + URR1A DNA MER1_type 58 226 0 4 1545 348 275 92 134 chr3 125847288 125847546 -33752237 - Lx8 LINE L1 -1063 6410 6181 4 1545 936 172 194 0 chr3 125847546 125847726 -33752057 - B3 SINE B2 0 216 2 4 1545 348 275 92 134 chr3 125847726 125847878 -33751905 - Lx8 LINE L1 -1293 6180 6017 4 1545 7037 230 33 14 chr3 125847995 125849694 -33750089 - Lx7 LINE L1 -411 7285 5552 4 1545 1337 281 47 4 chr3 125849694 125850180 -33749603 - Lx7 LINE L1 -612 5268 4762 4 1545 1147 299 105 16 chr3 125850178 125850681 -33749102 + Lx8 LINE L1 6457 7004 -469 4 1545 293 324 114 23 chr3 125850686 125850948 -33748835 + Lx8 LINE L1 7188 7473 0 4 1545 48 53 0 0 chr3 125850948 125851024 -33748759 + AT_rich Low_complexity Low_complexity 1 76 0 4 1545 444 314 56 35 chr3 125851101 125851332 -33748451 + L1M5 LINE L1 4938 5173 -973 4 1545 231 184 26 26 chr3 125851351 125851429 -33748354 + GA-rich Low_complexity Low_complexity 3 80 0 4 1545 26 0 0 0 chr3 125851633 125851659 -33748124 + AT_rich Low_complexity Low_complexity 1 26 0 4 1545 1187 74 0 0 chr3 125852265 125852413 -33747370 - B1_Mus1 SINE Alu 0 148 1 4 1545 192 77 0 0 chr3 125852480 125852506 -33747277 + (CAA)n Simple_repeat Simple_repeat 2 27 0 4 1545 279 171 58 47 chr3 125852697 125852783 -33747000 + A-rich Low_complexity Low_complexity 4 90 0 4 1545 2610 210 14 23 chr3 125853489 125854046 -33745737 + RMER1B Other Other 506 1057 -9 4 1545 432 277 93 26 chr3 125854290 125854483 -33745300 - MER31B LTR ERV1 0 466 261 4 1545 952 333 144 25 chr3 125854964 125855450 -33744333 - MTE-int LTR MaLR -121 1459 916 4 1545 712 333 0 10 chr3 125855440 125855640 -33744143 - 7SK RNA RNA -93 238 41 4 1545 742 42 51 0 chr3 125855677 125855795 -33743988 + (TAGA)n Simple_repeat Simple_repeat 4 127 0 4 1545 342 337 83 80 chr3 125855841 125856141 -33743642 - MTE-int LTR MaLR -704 876 576 4 1545 3027 233 61 15 chr3 125856181 125856901 -33742882 - Lx6 LINE L1 -4 7456 6704 4 1545 2242 220 55 8 chr3 125856901 125857395 -33742388 + Lx6 LINE L1 6187 6703 -757 4 1545 269 263 72 21 chr3 125857459 125857556 -33742227 - MTEa LTR MaLR 0 379 278 4 1545 355 333 22 43 chr3 125858259 125858397 -33741386 - MTEa LTR MaLR -244 135 1 4 1545 264 308 40 122 chr3 125858432 125858580 -33741203 - MER31B LTR ERV1 -229 237 102 4 1545 540 269 54 0 chr3 125858688 125858818 -33740965 + B1_Mur3 SINE Alu 13 149 0 4 1545 22 35 0 0 chr3 125858947 125858976 -33740807 + AT_rich Low_complexity Low_complexity 1 29 0 5 1545 2443 172 192 13 chr3 125859299 125860295 -33739488 + Lx3C LINE L1 5793 6966 -10 5 1545 688 238 51 38 chr3 125860304 125860675 -33739108 + L1M3 LINE L1 4253 4628 -1512 5 1545 329 269 0 71 chr3 125861803 125861887 -33737896 + ID4_ SINE ID 2 79 -4 5 1545 1167 84 0 0 chr3 125861935 125862163 -33737620 + (TCTA)n Simple_repeat Simple_repeat 1 228 0 5 1545 3706 16 121 0 chr3 125862163 125862602 -33737181 + MT2_Mm LTR ERVL 2 493 0 5 1545 45794 15 0 0 chr3 125862602 125867961 -33731822 + MERVL-int LTR ERVL 1 5360 -125 5 1545 390 167 46 35 chr3 125867961 125868048 -33731735 + ORR1A3-int LTR MaLR 553 640 -1323 5 1545 302 0 0 0 chr3 125868048 125868086 -33731697 + MERVL-int LTR ERVL 5448 5485 0 5 1545 3783 7 121 0 chr3 125868086 125868526 -33731257 + MT2_Mm LTR ERVL 1 493 0 5 1545 995 81 6 0 chr3 125868526 125868686 -33731097 + (TCTA)n Simple_repeat Simple_repeat 3 163 0 5 1545 339 150 0 0 chr3 125869223 125869283 -33730500 + (TA)n Simple_repeat Simple_repeat 2 61 0 5 1545 837 145 49 54 chr3 125870101 125870305 -33729478 + Lx3C LINE L1 6772 6974 -2 5 1545 207 0 0 0 chr3 125870312 125870335 -33729448 + (GA)n Simple_repeat Simple_repeat 1 23 0 5 1545 551 112 0 11 chr3 125870335 125870425 -33729358 + (GGAA)n Simple_repeat Simple_repeat 4 92 0 5 1545 29 47 0 0 chr3 125870451 125870494 -33729289 + AT_rich Low_complexity Low_complexity 1 43 0 5 1545 1173 104 33 0 chr3 125870569 125870751 -33729032 - B2_Mm2 SINE B2 -6 189 2 5 1545 456 19 0 0 chr3 125870826 125870879 -33728904 + (GA)n Simple_repeat Simple_repeat 1 53 0 5 1545 434 194 61 10 chr3 125871058 125871157 -33728626 - B3 SINE B2 0 216 113 5 1545 763 278 65 0 chr3 125871152 125871321 -33728462 - B3 SINE B2 -32 184 5 5 1545 456 174 0 0 chr3 125871346 125871438 -33728345 + (TA)n Simple_repeat Simple_repeat 2 93 0 5 1545 584 62 12 0 chr3 125871438 125871519 -33728264 + (TAGA)n Simple_repeat Simple_repeat 4 85 0 5 1545 3631 193 24 3 chr3 125872646 125873328 -33726455 - Lx5 LINE L1 0 7050 6355 5 1545 529 294 72 6 chr3 125873328 125873509 -33726274 - B3 SINE B2 -20 196 4 5 1545 587 308 272 17 chr3 125874330 125874679 -33725104 - MTE-int LTR MaLR -533 1047 545 5 1545 2770 205 70 2 chr3 125874679 125875631 -33724152 - Lx5 LINE L1 -770 6288 5270 5 1545 17154 89 22 5 chr3 125875625 125878990 -33720793 - L1VL4 LINE L1 -4 3555 133 5 1545 668 124 8 8 chr3 125878987 125879109 -33720674 - Lx5 LINE L1 -578 5299 5178 5 1545 2404 217 86 23 chr3 125879102 125879757 -33720026 + Lx2B LINE L1 6305 7000 0 5 1545 432 0 0 0 chr3 125879815 125879863 -33719920 + (TAGA)n Simple_repeat Simple_repeat 1 48 0 5 1545 357 43 0 0 chr3 125880180 125880227 -33719556 + (GA)n Simple_repeat Simple_repeat 2 48 0 5 1545 1458 164 15 0 chr3 125880491 125880820 -33718963 - ORR1A0 LTR MaLR -1306 274 1 5 1545 2104 35 0 0 chr3 125880820 125881076 -33718707 - ORR1A0-int LTR MaLR 0 1792 1537 5 1545 1631 31 0 0 chr3 125881080 125881275 -33718508 - MT2_Mm LTR ERVL 0 493 299 5 1545 460 260 0 0 chr3 125881273 125881377 -33718406 - MTE2b-int LTR MaLR -1474 106 3 5 1545 895 279 138 29 chr3 125881376 125881716 -33718067 - MTE2b LTR MaLR -2 377 1 5 1545 230 262 38 53 chr3 125882366 125882499 -33717284 + Lx8 LINE L1 4615 4745 -1135 5 1545 576 186 0 14 chr3 125882502 125882644 -33717139 + (TA)n Simple_repeat Simple_repeat 2 141 0 5 1545 2555 298 105 34 chr3 125882676 125883754 -33716029 + Lx8 LINE L1 4768 5965 -1508 5 1545 1375 28 0 11 chr3 125883754 125883936 -33715847 + (TG)n Simple_repeat Simple_repeat 1 180 0 5 1545 2555 315 108 32 chr3 125883936 125884774 -33715009 + Lx8 LINE L1 5966 6886 -587 5 1545 2747 119 11 7 chr3 125884774 125885214 -33714569 - Lx LINE L1 0 6654 6213 5 1545 2555 315 108 32 chr3 125885214 125885744 -33714039 + Lx8 LINE L1 6887 7429 -44 5 1545 4900 206 62 19 chr3 125886759 125887944 -33711839 + Lx5 LINE L1 5815 7050 0 5 1545 559 319 91 99 chr3 125888129 125888183 -33711600 - ORR1D2 LTR MaLR 0 370 305 5 1545 456 51 0 0 chr3 125888183 125888242 -33711541 + (CA)n Simple_repeat Simple_repeat 2 60 0 5 1545 405 0 0 0 chr3 125888242 125888286 -33711497 + (GA)n Simple_repeat Simple_repeat 2 46 0 5 1545 559 319 91 99 chr3 125888286 125888603 -33711180 - ORR1D2 LTR MaLR -66 304 2 5 1545 967 246 52 48 chr3 125888642 125888933 -33710850 - MTE2a LTR MaLR -56 323 32 5 1545 225 182 0 0 chr3 125889183 125889238 -33710545 + T-rich Low_complexity Low_complexity 1 55 0 5 1545 7945 40 1 2 chr3 125889243 125890196 -33709587 - L1Md_F2 LINE L1 -14 6568 5617 5 1545 354 138 0 0 chr3 125890978 125891036 -33708747 + (GGGGA)n Simple_repeat Simple_repeat 4 61 0 5 1545 234 0 0 0 chr3 125891942 125891968 -33707815 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 5 1545 181 294 39 0 chr3 125892023 125892074 -33707709 - MER5B DNA MER1_type -27 151 99 5 1545 28 29 0 0 chr3 125892507 125892542 -33707241 + AT_rich Low_complexity Low_complexity 1 35 0 5 1545 1043 90 14 0 chr3 125892544 125892688 -33707095 + B1_Mus2 SINE Alu 2 147 0 5 1545 211 146 18 18 chr3 125892937 125892993 -33706790 + (TTTA)n Simple_repeat Simple_repeat 1 56 0 5 1545 862 378 11 9 chr3 125893316 125893751 -33706032 - Lx8 LINE L1 -230 7243 6808 5 1545 10045 43 0 0 chr3 125894045 125895293 -33704490 + L1Md_F3 LINE L1 2461 3708 -2175 5 1545 2129 47 0 0 chr3 125895296 125895554 -33704229 + L1Md_F3 LINE L1 5329 5586 -297 5 1545 7907 44 7 8 chr3 125895554 125896553 -33703230 + L1Md_F3 LINE L1 5587 6584 0 5 1545 193 286 95 0 chr3 125896589 125896652 -33703131 - L4 LINE RTE -633 1396 1328 5 1545 407 271 50 8 chr3 125896657 125896776 -33703007 - LTR52 LTR ERVL -59 362 239 5 1545 347 286 66 55 chr3 125896802 125896983 -33702800 - LTR52 LTR ERVL -238 183 1 5 1545 228 135 0 0 chr3 125898434 125898471 -33701312 + (T)n Simple_repeat Simple_repeat 1 37 0 5 1545 366 42 0 0 chr3 125898710 125898758 -33701025 + (TG)n Simple_repeat Simple_repeat 2 49 0 5 1545 287 308 29 43 chr3 125899428 125899567 -33700216 - L2a LINE L2 -273 3153 3017 5 1545 916 75 0 15 chr3 125899705 125899841 -33699942 + L1Md_F2 LINE L1 6437 6570 -12 5 1545 21 0 0 0 chr3 125900039 125900060 -33699723 + AT_rich Low_complexity Low_complexity 1 21 0 5 1545 1206 34 0 20 chr3 125900065 125900215 -33699568 + B1_Mus2 SINE Alu 1 147 0 5 1545 180 0 0 0 chr3 125900220 125900240 -33699543 + (CAA)n Simple_repeat Simple_repeat 2 21 0 5 1545 183 42 0 0 chr3 125900269 125900293 -33699490 + (TG)n Simple_repeat Simple_repeat 2 25 0 5 1545 228 254 31 31 chr3 125900326 125900391 -33699392 - B3A SINE B2 -114 84 20 5 1545 323 215 39 25 chr3 125900658 125900750 -33699033 + B1_Mus2 SINE Alu 2 107 -41 5 1545 326 80 20 0 chr3 125900754 125900804 -33698979 + (TGAA)n Simple_repeat Simple_repeat 3 53 0 5 1545 374 272 50 42 chr3 125901904 125902023 -33697760 - B3 SINE B2 -5 211 92 5 1545 244 316 64 87 chr3 125902525 125902680 -33697103 + MER76 LTR ERVL 433 583 -108 5 1545 2293 206 83 30 chr3 125902680 125903210 -33696573 + RMER15 LTR ERVL 1 558 -17 5 1545 2134 272 48 40 chr3 125903221 125903825 -33695958 + RMER15-int LTR ERVL 4 612 -4387 5 1545 455 248 9 0 chr3 125903832 125903937 -33695846 + RMER15-int LTR ERVL 758 863 -4136 5 1545 601 218 0 0 chr3 125903933 125904043 -33695740 + RMER15-int LTR ERVL 1406 1515 -3484 5 1545 1429 100 0 5 chr3 125904203 125904394 -33695389 - Lx LINE L1 -352 6302 6113 5 1545 1733 100 8 4 chr3 125904395 125904655 -33695128 + Lx LINE L1 6392 6652 -2 5 1545 1252 250 14 20 chr3 125904664 125904958 -33694825 + RMER15-int LTR ERVL 1727 2018 -2981 5 1545 708 281 27 44 chr3 125904959 125905253 -33694530 - L1MB7 LINE L1 -354 5830 5542 5 1545 215 295 52 93 chr3 125905964 125906061 -33693722 + B3A SINE B2 2 94 -104 5 1545 1069 149 17 0 chr3 125907067 125907241 -33692542 + URR1A DNA MER1_type 47 223 -3 5 1545 236 378 83 24 chr3 125907609 125907693 -33692090 + PB1D10 SINE Alu 1 89 -28 5 1545 23 0 0 0 chr3 125907758 125907781 -33692002 + AT_rich Low_complexity Low_complexity 1 23 0 5 1545 1155 69 6 11 chr3 125907860 125908037 -33691746 + (TAGA)n Simple_repeat Simple_repeat 2 177 0 5 1545 915 44 14 14 chr3 125908057 125908195 -33691588 + (TAGA)n Simple_repeat Simple_repeat 4 141 0 5 1545 450 0 0 0 chr3 125908816 125908866 -33690917 + (CA)n Simple_repeat Simple_repeat 2 51 0 5 1545 1638 340 113 4 chr3 125909067 125909819 -33689964 - Lx8 LINE L1 -381 7092 6259 5 1545 22 56 0 0 chr3 125911547 125911583 -33688200 + AT_rich Low_complexity Low_complexity 1 36 0 5 1545 253 329 72 40 chr3 125912004 125912226 -33687557 - L1M5 LINE L1 -488 5706 5478 5 1545 195 42 0 0 chr3 125913523 125913547 -33686236 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 5 1545 456 377 78 13 chr3 125913828 125914059 -33685724 + B4A SINE B4 1 246 -46 5 1545 23 33 0 0 chr3 125914584 125914614 -33685169 + AT_rich Low_complexity Low_complexity 1 30 0 5 1545 1061 235 118 42 chr3 125914741 125915096 -33684687 + ORR1C2 LTR MaLR 3 384 0 5 1545 1442 62 9 62 chr3 125915261 125915485 -33684298 + L1Md_F3 LINE L1 6372 6583 -1 5 1545 237 349 123 9 chr3 125915650 125915861 -33683922 + L2 LINE L2 2658 2892 -527 5 1545 404 318 156 32 chr3 125915876 125916256 -33683527 + L1MC3 LINE L1 6718 7144 -641 5 1545 275 265 96 11 chr3 125916361 125916480 -33683303 - MLT2B4 LTR ERVL -374 141 5 5 1545 381 229 39 59 chr3 125916645 125916798 -33682985 - ERVL-B4-int LTR ERVL -180 5534 5385 5 1545 753 268 81 19 chr3 125916847 125917106 -33682677 - ERVL-B4-int LTR ERVL -2113 3601 3327 5 1545 3288 73 1 0 chr3 125917106 125917623 -33682160 - Lx3_Mus LINE L1 -1019 5990 5474 5 1545 254 119 275 77 chr3 125917624 125917715 -33682068 + Lx3_Mus LINE L1 6018 6126 -883 5 1545 3019 153 71 35 chr3 125917715 125918484 -33681299 - RLTR13D3 LTR ERVK -252 771 1 5 1545 1855 132 16 16 chr3 125918484 125918806 -33680977 + Lx3_Mus LINE L1 6681 7002 -7 5 1545 3636 76 6 6 chr3 125918823 125919352 -33680431 - MusHAL1 LINE L1 -319 2393 1865 5 1545 9094 149 40 2 chr3 125919357 125921781 -33678002 + Lx LINE L1 4122 6652 -2 5 1545 829 258 66 11 chr3 125922113 125922387 -33677396 - ERVL-B4-int LTR ERVL -2710 3004 2716 5 1545 751 294 313 10 chr3 125922496 125922713 -33677070 + Lx7 LINE L1 6642 6923 -773 5 1545 2856 44 6 0 chr3 125922713 125923057 -33676726 + ORR1A0 LTR MaLR 1 346 0 5 1545 751 308 17 43 chr3 125923057 125923296 -33676487 + Lx7 LINE L1 6924 7157 -539 5 1545 375 23 0 0 chr3 125923376 125923420 -33676363 + (TG)n Simple_repeat Simple_repeat 1 44 0 5 1545 9454 93 17 19 chr3 125923478 125925523 -33674260 + L1Md_F3 LINE L1 413 2452 -3431 5 1545 18250 58 2 1 chr3 125925527 125927883 -33671900 + L1Md_F3 LINE L1 3229 5586 -297 5 1545 7803 47 27 1 chr3 125927883 125928855 -33670928 + L1Md_F3 LINE L1 5587 6583 -1 5 1545 21 0 0 0 chr3 125928954 125928975 -33670808 + AT_rich Low_complexity Low_complexity 1 21 0 5 1545 302 266 129 14 chr3 125929167 125929364 -33670419 - MTD LTR MaLR 0 419 169 5 1545 191 36 36 0 chr3 125929402 125929430 -33670353 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 5 1545 856 217 4 193 chr3 125929441 125929721 -33670062 + RMER19B LTR ERVK 1 227 -675 5 1545 2467 194 64 13 chr3 125929726 125930255 -33669528 + RMER19B LTR ERVK 340 895 -7 5 1545 489 299 7 15 chr3 125932350 125932486 -33667297 - ID_B1 SINE B4 -7 217 83 5 1545 271 217 40 68 chr3 125932518 125932592 -33667191 - RLTR25B LTR ERVK -516 512 441 5 1545 649 71 0 0 chr3 125932537 125932621 -33667162 - B1_Mus1 SINE Alu -53 95 12 5 1545 540 41 27 0 chr3 125932622 125932695 -33667088 + B1_Mm SINE Alu 73 147 0 6 1545 28381 103 62 32 chr3 125932698 125937925 -33661858 - L1_Mur1 LINE L1 -100 5786 65 6 1545 372 266 251 8 chr3 125938074 125938255 -33661528 - L1M4 LINE L1 -5112 2222 2005 6 1545 200 34 0 33 chr3 125938255 125938285 -33661498 + (TTTG)n Simple_repeat Simple_repeat 3 31 0 6 1545 728 266 251 8 chr3 125938285 125938474 -33661309 - L1M4 LINE L1 -5330 2004 1762 6 1545 6329 71 5 6 chr3 125938474 125939308 -33660475 + L1Md_F2 LINE L1 5750 6582 0 6 1545 728 313 124 70 chr3 125939308 125940164 -33659619 - L1M4 LINE L1 -5100 1804 896 6 1545 378 220 24 41 chr3 125940336 125940459 -33659324 - L1M4 LINE L1 -6384 520 400 6 1545 715 213 7 0 chr3 125940780 125940916 -33658867 + B1_Mus2 SINE Alu 2 138 -9 6 1545 2952 98 0 0 chr3 125941543 125941942 -33657841 - L1_Mus4 LINE L1 -425 6211 5813 6 1545 1303 61 15 10 chr3 125941942 125942141 -33657642 + L1_Mus3 LINE L1 6437 6636 -2 6 1545 1872 310 40 55 chr3 125942232 125942513 -33657270 + Lx8 LINE L1 6135 6406 -1067 6 1545 1512 98 5 0 chr3 125942513 125942728 -33657055 - L1_Mus2 LINE L1 -1 6565 6350 6 1545 1872 310 40 55 chr3 125942728 125943227 -33656556 + Lx8 LINE L1 6407 6903 -570 6 1545 400 311 124 31 chr3 125943231 125943832 -33655951 - L1MDa LINE L1 -3329 3208 2536 6 1545 354 331 34 61 chr3 125943982 125944130 -33655653 - RSINE1 SINE B4 0 165 22 6 1545 540 309 89 41 chr3 125944229 125944790 -33654993 - L1MDa LINE L1 -4607 2026 1439 6 1545 362 325 95 42 chr3 125945027 125945290 -33654493 - L1MDa LINE L1 -5425 1115 839 6 1545 807 126 0 0 chr3 125945902 125946029 -33653754 + (TTC)n Simple_repeat Simple_repeat 3 129 0 6 1545 3272 88 11 4 chr3 125946031 125946486 -33653297 - L1_Mus3 LINE L1 -15 6623 6166 6 1545 3834 136 16 5 chr3 125946486 125946539 -33653244 + L1_Mm LINE L1 4680 4732 -1151 6 1545 234 0 0 0 chr3 125946539 125946565 -33653218 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 6 1545 3834 136 16 5 chr3 125946565 125947178 -33652605 + L1_Mm LINE L1 4733 5352 -531 6 1545 7963 89 15 20 chr3 125947543 125948713 -33651070 + Lx3A LINE L1 5813 6977 -4 6 1545 268 268 128 104 chr3 125949531 125949656 -33650127 + RMER12 LTR ERVK 724 851 -471 6 1545 248 308 58 29 chr3 125949958 125950089 -33649694 - L1M4 LINE L1 -357 5885 5751 6 1545 804 96 0 0 chr3 125950089 125950204 -33649579 + (TG)n Simple_repeat Simple_repeat 2 116 0 6 1545 248 319 76 28 chr3 125950204 125950526 -33649257 - L1M4 LINE L1 -492 5750 5398 6 1545 661 232 7 0 chr3 125950529 125950667 -33649116 + B1_Mus1 SINE Alu 6 144 -4 6 1545 378 250 110 52 chr3 125950681 125950854 -33648929 - L1M4 LINE L1 -757 5389 5207 6 1545 372 223 0 0 chr3 125951024 125951127 -33648656 + GA-rich Low_complexity Low_complexity 1 103 0 6 1545 785 248 53 0 chr3 125951617 125951879 -33647904 + L1_Mur3 LINE L1 4856 5131 -749 6 1545 228 261 87 0 chr3 125952205 125952297 -33647486 + L1M2 LINE L1 5825 5924 -388 6 1545 1169 202 21 0 chr3 125952299 125952536 -33647247 - RLTR40 LTR ERVK -572 245 4 6 1545 797 187 111 89 chr3 125953407 125953677 -33646106 + RMER19C LTR ERVK 1 276 -335 6 1545 295 292 34 50 chr3 125953889 125954008 -33645775 - MTEb LTR MaLR -6 373 257 6 1545 2987 183 118 16 chr3 125954099 125954728 -33645055 - RMER13A LTR ERVK -165 695 3 6 1545 1366 308 76 27 chr3 125954804 125955512 -33644271 + Lx8 LINE L1 6552 7294 -179 6 1545 740 67 9 19 chr3 125955524 125955631 -33644152 - B2_Mm2 SINE B2 -46 149 44 6 1545 889 76 15 0 chr3 125955999 125956130 -33643653 + (TTCC)n Simple_repeat Simple_repeat 3 135 0 6 1545 270 364 30 10 chr3 125956135 125956235 -33643548 - PB1D10 SINE Alu -15 102 1 6 1545 352 365 83 6 chr3 125957649 125957817 -33641966 + MTE-int LTR MaLR 476 656 -924 6 1545 1579 298 86 55 chr3 125957833 125958472 -33641311 + MTE-int LTR MaLR 744 1402 -178 6 1545 647 168 296 12 chr3 125958461 125958630 -33641153 + RLTR42 LTR ERVK 23 239 0 6 1545 765 190 79 35 chr3 125958644 125958846 -33640937 + RLTR42-int LTR ERVK 15 225 -5297 6 1545 1098 246 7 35 chr3 125958912 125959202 -33640581 + Lx6 LINE L1 7173 7454 -6 6 1545 772 233 5 85 chr3 125959202 125959413 -33640370 + RLTR42-int LTR ERVK 338 531 -4991 6 1545 460 123 111 0 chr3 125959415 125959496 -33640287 - BC1_Mm scRNA scRNA -62 90 1 6 1545 352 232 12 0 chr3 125959507 125959589 -33640194 + RLTR42-int LTR ERVK 539 621 -4901 6 1545 828 210 57 36 chr3 125959587 125959780 -33640003 + RLTR42-int LTR ERVK 733 929 -4593 6 193 10230 153 127 18 chr3 125959786 125960918 -33638865 - Lx5 LINE L1 -1046 6004 4627 6 1546 7728 58 0 8 chr3 125960918 125961902 -33637881 + L1Md_F2 LINE L1 5588 6563 -19 6 1546 10230 177 197 25 chr3 125961902 125964151 -33635632 - Lx5 LINE L1 -1251 4626 2051 6 1546 600 111 0 0 chr3 125964151 125964241 -33635542 + (TG)n Simple_repeat Simple_repeat 2 91 0 6 1546 10230 177 197 25 chr3 125964241 125964259 -33635524 - Lx5 LINE L1 -3827 2050 2033 6 1546 464 223 94 83 chr3 125964723 125964904 -33634879 + RLTR42-int LTR ERVK 1613 1795 -3727 6 1546 2004 157 75 129 chr3 125965440 125965904 -33633879 + RLTR42-int LTR ERVK 1870 2301 -3221 6 1546 252 0 0 0 chr3 125965904 125965932 -33633851 + (TC)n Simple_repeat Simple_repeat 2 29 0 6 1546 441 0 0 0 chr3 125965932 125965980 -33633803 + (TA)n Simple_repeat Simple_repeat 2 50 0 6 1546 2004 157 75 129 chr3 125965980 125966158 -33633625 + RLTR42-int LTR ERVK 2302 2477 -3045 6 1546 269 0 0 53 chr3 125966158 125966196 -33633587 + (CAAAAA)n Simple_repeat Simple_repeat 6 41 0 6 1546 293 262 71 0 chr3 125966198 125966282 -33633501 + RLTR42-int LTR ERVK 2478 2567 -2955 6 1546 26544 5 0 0 chr3 125966282 125969418 -33630365 + L1Md_A LINE L1 2451 5586 -297 6 1546 9086 1 0 0 chr3 125969418 125970413 -33629370 + L1Md_A LINE L1 5587 6581 -1 6 1546 13062 161 52 49 chr3 125970477 125972757 -33627026 + RLTR42-int LTR ERVK 2589 4847 -675 6 1546 3352 70 5 2 chr3 125972757 125973317 -33626466 - L1_Mus1 LINE L1 0 6567 6129 6 1546 13062 161 52 49 chr3 125973317 125973960 -33625823 + RLTR42-int LTR ERVK 4848 5522 0 6 1546 1058 194 47 38 chr3 125973968 125974204 -33625579 + RLTR42 LTR ERVK 2 239 0 6 1546 300 246 96 103 chr3 125974240 125974376 -33625407 + ORR1E-int LTR MaLR 1416 1550 -30 6 1546 773 297 57 91 chr3 125974380 125974732 -33625051 + ORR1E LTR MaLR 15 354 -5 6 1546 820 301 82 8 chr3 125974757 125975025 -33624758 + MLT1A0 LTR MaLR 78 365 0 6 1546 314 308 128 50 chr3 125975026 125975199 -33624584 + LTR50 LTR ERVL 29 221 -574 6 1546 7720 44 14 1 chr3 125975199 125976150 -33623633 + L1Md_F2 LINE L1 5608 6570 -12 6 1546 314 308 128 50 chr3 125976150 125976195 -33623588 + LTR50 LTR ERVL 222 264 -531 6 1546 377 279 9 9 chr3 125977175 125977280 -33622503 + RLTR14-int LTR ERV1 5095 5199 -118 6 1546 335 70 0 50 chr3 125977625 125977685 -33622098 + (T)n Simple_repeat Simple_repeat 1 57 0 6 1546 698 0 0 0 chr3 125977694 125977779 -33622004 - L1Md_T LINE L1 0 6582 6498 6 1546 1372 6 0 0 chr3 125977779 125977939 -33621844 + L1Md_T LINE L1 6267 6426 -156 6 1546 448 281 31 38 chr3 125977939 125978098 -33621685 + RLTR14 LTR ERV1 225 382 0 6 1546 673 224 16 31 chr3 125978373 125978502 -33621281 + B1_Mur1 SINE Alu 15 141 -8 6 1546 186 43 0 0 chr3 125978510 125978533 -33621250 + (TAAG)n Simple_repeat Simple_repeat 1 23 0 6 1546 332 346 46 0 chr3 125978537 125978667 -33621116 + MIR SINE MIR 45 180 -82 6 1546 217 153 22 45 chr3 125979876 125979965 -33619818 + GA-rich Low_complexity Low_complexity 5 91 0 6 1546 626 275 117 15 chr3 125980119 125980315 -33619468 - B3 SINE B2 0 216 1 6 1546 341 296 15 7 chr3 125981884 125982020 -33617763 + G-rich Low_complexity Low_complexity 2 138 0 6 1546 377 319 117 65 chr3 125983036 125983060 -33616723 - RSINE1 SINE B4 -2 163 140 6 1546 303 28 0 0 chr3 125983060 125983096 -33616687 + (CA)n Simple_repeat Simple_repeat 1 36 0 6 1546 377 319 117 65 chr3 125983096 125983150 -33616633 - RSINE1 SINE B4 -26 139 83 6 1546 2068 131 99 11 chr3 125983150 125983512 -33616271 - ORR1B1 LTR MaLR 0 394 1 6 1546 377 319 117 65 chr3 125983512 125983586 -33616197 - RSINE1 SINE B4 -83 82 3 6 1546 4318 39 0 4 chr3 125983605 125984120 -33615663 - L1Md_F2 LINE L1 -8 6574 6062 6 1546 14411 61 6 0 chr3 125984120 125986234 -33613549 + L1Md_F2 LINE L1 3919 6045 -537 6 1546 1086 292 48 25 chr3 125986656 125987081 -33612702 - RMER1B Other Other -145 921 393 6 1546 2696 163 69 8 chr3 125989000 125989494 -33610289 - RLTR11A LTR ERVK -4 524 1 6 1546 324 0 0 0 chr3 125990192 125990228 -33609555 + (GA)n Simple_repeat Simple_repeat 2 37 0 6 1546 35 54 0 0 chr3 125990255 125990311 -33609472 + AT_rich Low_complexity Low_complexity 1 56 0 6 1546 1252 84 0 6 chr3 125990521 125990689 -33609094 + B2_Mm2 SINE B2 2 168 -27 6 1546 321 284 124 38 chr3 125990975 125991428 -33608355 + L1MA5 LINE L1 5799 6290 -10 6 1546 411 307 96 15 chr3 125991645 125991907 -33607876 + L1MEc LINE L1 1103 1384 -5016 6 1546 351 0 0 0 chr3 125991907 125991946 -33607837 + (CA)n Simple_repeat Simple_repeat 2 40 0 6 1546 411 307 96 15 chr3 125991946 125992143 -33607640 + L1MEc LINE L1 1385 1599 -4801 6 1546 868 18 18 0 chr3 125992365 125992475 -33607308 + (TAGA)n Simple_repeat Simple_repeat 2 113 0 6 1546 599 357 117 18 chr3 125993092 125993426 -33606357 - LTR40b LTR ERVL -2 460 94 6 1546 297 211 114 0 chr3 125993572 125993686 -33606097 - Lx9 LINE L1 -1 7643 7517 6 1546 408 20 0 0 chr3 125993689 125993738 -33606045 + (CA)n Simple_repeat Simple_repeat 2 50 0 6 1546 230 208 19 0 chr3 125993738 125993791 -33605992 - Lx9 LINE L1 -513 7131 7078 6 1546 363 237 15 21 chr3 125993794 125993808 -33605975 - B4A SINE B4 -108 184 127 6 1546 481 168 6 4 chr3 125993808 125993895 -33605888 - B1_Mus1 SINE Alu -32 88 1 6 1546 27 29 0 0 chr3 125993912 125993946 -33605837 + AT_rich Low_complexity Low_complexity 1 34 0 6 1546 941 269 30 24 chr3 125994116 125994444 -33605339 - Lx9 LINE L1 -1615 6029 5700 6 1546 618 329 80 69 chr3 125994624 125995117 -33604666 - MLT1B LTR MaLR -7 460 3 6 1546 254 301 119 24 chr3 125996630 125996756 -33603027 + MLT1A1 LTR MaLR 1 138 -270 6 1546 251 270 66 57 chr3 125996778 125996884 -33602899 + ORR1E LTR MaLR 90 196 -163 6 1546 458 359 70 32 chr3 125996913 125997100 -33602683 + B4A SINE B4 91 284 -8 6 1546 369 0 0 0 chr3 125997103 125997144 -33602639 + (CA)n Simple_repeat Simple_repeat 2 42 0 6 1546 3930 159 134 18 chr3 125997225 125997992 -33601791 + RMER13A LTR ERVK 1 856 -4 6 1546 396 255 28 0 chr3 125998019 125998125 -33601658 - HERVL40-int LTR ERVL -4525 1005 897 6 1546 980 290 64 39 chr3 125998640 125999028 -33600755 - MLT2D LTR ERVL -11 403 6 6 1546 2217 199 43 14 chr3 125999080 125999640 -33600143 - Lx7 LINE L1 -279 6021 5424 6 1546 1429 168 116 28 chr3 125999639 126000000 -33599783 - Lx7 LINE L1 -1311 4569 4177 6 1546 2107 138 59 8 chr3 126000000 126000373 -33599410 - L1_Mur3 LINE L1 -1704 4176 3785 1 1546 3121 142 59 68 chr3 126000381 126001062 -33598721 - L1_Mur3 LINE L1 -3770 2110 1436 1 1546 477 151 0 0 chr3 126001067 126001186 -33598597 + (TAGA)n Simple_repeat Simple_repeat 2 120 0 2 1546 3819 208 137 17 chr3 126001186 126002226 -33597557 - L1_Mur3 LINE L1 -4454 1426 275 1 1546 243 258 97 0 chr3 126002498 126002560 -33597223 - LTR40a LTR ERVL 0 519 452 3 1546 321 245 0 0 chr3 126004382 126004484 -33595299 + (TG)n Simple_repeat Simple_repeat 2 103 0 4 1546 296 206 43 29 chr3 126004484 126004554 -33595229 - ID4_ SINE ID -10 73 3 5 1546 544 284 5 75 chr3 126005904 126006117 -33593666 + B3A SINE B2 1 198 0 6 1546 483 276 124 16 chr3 126006527 126006656 -33593127 - B1_Mur1 SINE Alu -2 145 3 7 1546 2327 156 49 33 chr3 126007015 126007458 -33592325 - RMER6B LTR ERVK 0 461 11 8 1546 1505 127 196 0 chr3 126007458 126007733 -33592050 - ORR1A4 LTR MaLR 0 329 1 9 1546 342 322 85 28 chr3 126008073 126008249 -33591534 - B4 SINE B4 -105 187 2 1 1546 21 57 0 0 chr3 126008499 126008534 -33591249 + AT_rich Low_complexity Low_complexity 1 35 0 1 1546 255 152 0 0 chr3 126008741 126008787 -33590996 + CT-rich Low_complexity Low_complexity 1 46 0 1 1546 216 97 0 0 chr3 126008824 126008855 -33590928 + (TCTG)n Simple_repeat Simple_repeat 2 32 0 1 1546 315 0 0 0 chr3 126008855 126008889 -33590894 + (TCTA)n Simple_repeat Simple_repeat 2 36 0 1 1546 249 304 18 0 chr3 126008895 126008951 -33590832 - B1F1 SINE Alu -85 64 8 1 1546 2117 198 46 0 chr3 126010530 126010925 -33588858 + MTC LTR MaLR 1 413 -8 1 1546 3476 276 95 26 chr3 126012355 126012585 -33587198 + L1_Mur3 LINE L1 2744 3029 -2851 1 1546 1068 96 7 0 chr3 126012585 126012731 -33587052 + B1_Mus1 SINE Alu 1 147 -1 1 1546 3476 276 95 26 chr3 126012731 126013385 -33586398 + L1_Mur3 LINE L1 3030 3738 -2142 1 1546 3743 83 18 0 chr3 126013385 126013889 -33585894 + L1_Mus1 LINE L1 6055 6567 0 1 1546 3476 276 95 26 chr3 126013889 126014704 -33585079 + L1_Mur3 LINE L1 3739 4560 -1320 1 1546 594 97 32 0 chr3 126014699 126014792 -33584991 - L1_Mur1 LINE L1 -1400 4486 4391 2 1546 3726 71 0 21 chr3 126014788 126015319 -33584464 + L1_Mur1 LINE L1 3874 4393 -1493 2 1546 22 0 0 0 chr3 126015349 126015371 -33584412 + AT_rich Low_complexity Low_complexity 1 22 0 2 1546 226 173 0 0 chr3 126015380 126015432 -33584351 + Lx8 LINE L1 5166 5217 -630 2 1546 966 270 16 14 chr3 126015470 126015769 -33584014 + Lx8 LINE L1 5552 5880 -687 2 1546 588 50 0 0 chr3 126016398 126016478 -33583305 + (TG)n Simple_repeat Simple_repeat 2 81 0 2 1546 415 182 26 0 chr3 126018201 126018278 -33581505 - L1_Mur3 LINE L1 0 5880 5802 2 1546 835 246 45 9 chr3 126018274 126018495 -33581288 + Lx8 LINE L1 6301 6529 -944 2 1546 3150 271 65 57 chr3 126018528 126019076 -33580707 + MTC-int LTR MaLR 2 550 -708 2 1546 1828 193 99 0 chr3 126019076 126019459 -33580324 + MTC LTR MaLR 1 421 0 2 1546 3150 277 66 63 chr3 126019459 126020028 -33579755 + MTC-int LTR MaLR 544 1098 0 2 1546 1754 220 76 3 chr3 126020059 126020442 -33579341 + MTD LTR MaLR 9 419 0 2 1546 284 197 15 0 chr3 126020443 126020509 -33579274 + L1MB5 LINE L1 6102 6168 -6 2 1546 1908 82 7 4 chr3 126021087 126021356 -33578427 - L1_Mus3 LINE L1 -9 6629 6360 2 1546 639 100 0 0 chr3 126021356 126021446 -33578337 + L1_Mus3 LINE L1 6272 6361 -277 2 1546 458 276 146 40 chr3 126021630 126021939 -33577844 + L1_Mur3 LINE L1 985 1317 -6411 3 1546 6366 133 36 3 chr3 126021939 126022943 -33576840 - Lx2 LINE L1 -1 6996 5960 3 1546 458 243 237 24 chr3 126022943 126023242 -33576541 + L1_Mur3 LINE L1 1318 1673 -4207 3 1546 497 246 47 53 chr3 126023320 126023470 -33576313 - MTEb LTR MaLR -28 351 203 3 1546 201 159 0 0 chr3 126023470 126023514 -33576269 + (CAGA)n Simple_repeat Simple_repeat 1 44 0 3 1546 728 227 46 55 chr3 126023524 126023743 -33576040 - MTEb LTR MaLR -162 217 1 3 1546 248 299 123 64 chr3 126023777 126023940 -33575843 + L1ME3B LINE L1 5404 5578 -866 3 1546 660 23 0 0 chr3 126023940 126024026 -33575757 + L1Md_A LINE L1 6497 6582 0 3 1546 439 308 91 48 chr3 126024026 126024382 -33575401 + L1ME3B LINE L1 5579 5949 -291 3 1546 225 214 65 84 chr3 126024764 126024871 -33574912 + CR1_Mam LINE CR1 1280 1384 -820 3 1546 558 0 0 0 chr3 126026479 126026541 -33573242 + (CAAAA)n Simple_repeat Simple_repeat 2 63 0 3 1546 21 36 0 0 chr3 126028437 126028465 -33571318 + AT_rich Low_complexity Low_complexity 1 28 0 3 1546 1501 145 7 39 chr3 126029616 126029896 -33569887 + Lx3C LINE L1 6706 6976 0 3 1546 2257 42 93 10 chr3 126030537 126030850 -33568933 + ORR1A1 LTR MaLR 8 346 0 4 1546 3267 298 50 99 chr3 126030863 126034405 -33565378 - Lx8 LINE L1 -128 7345 4002 4 1546 347 229 69 51 chr3 126034528 126034703 -33565080 + Lx9 LINE L1 7464 7641 -3 4 1546 423 20 0 0 chr3 126035194 126035245 -33564538 + L1Md_F2 LINE L1 6513 6563 -19 4 1546 357 24 0 0 chr3 126035248 126035290 -33564493 + (TAAA)n Simple_repeat Simple_repeat 2 43 0 4 1546 852 237 9 14 chr3 126036976 126037190 -33562593 + B3 SINE B2 1 213 -3 4 1546 2137 148 70 10 chr3 126037441 126037824 -33561959 + RLTR31_Mm LTR ERVK 1 406 -155 4 1546 681 195 5 99 chr3 126037911 126038122 -33561661 + RLTR31_Mm LTR ERVK 371 561 0 4 1546 414 0 0 0 chr3 126039505 126039551 -33560232 + (TA)n Simple_repeat Simple_repeat 2 47 0 4 1546 785 121 17 6 chr3 126039569 126039744 -33560039 + (TAGA)n Simple_repeat Simple_repeat 1 177 0 4 1546 509 312 122 27 chr3 126040914 126041177 -33558606 - Lx8 LINE L1 -15 7458 7171 4 1546 248 329 14 0 chr3 126042765 126042838 -33556945 - ID4_ SINE ID -7 76 3 5 1546 344 368 9 86 chr3 126043503 126043723 -33556060 + MLT1E1 LTR MaLR 436 638 -16 5 1546 1709 259 213 0 chr3 126043927 126044397 -33555386 + RMER15 LTR ERVL 1 570 -5 5 1546 316 291 101 22 chr3 126044665 126044844 -33554939 + L1MCc LINE L1 27 219 -6204 5 1546 222 378 0 30 chr3 126045950 126046051 -33553732 - L2b LINE L2 -5 3370 3273 5 1546 207 304 0 12 chr3 126048431 126048504 -33551279 + (CATATA)n Simple_repeat Simple_repeat 6 77 0 5 1546 210 37 0 0 chr3 126048504 126048531 -33551252 + (CA)n Simple_repeat Simple_repeat 2 28 0 5 1546 207 304 0 12 chr3 126048531 126048537 -33551246 + (CATATA)n Simple_repeat Simple_repeat 6 11 0 5 1546 249 238 24 12 chr3 126048722 126048807 -33550976 + L1MEf LINE L1 864 949 -5251 5 1546 281 291 93 59 chr3 126048842 126049079 -33550704 + RLTR42-int LTR ERVK 1149 1393 -4129 5 1546 541 292 22 7 chr3 126049673 126049811 -33549972 + B3 SINE B2 2 141 -75 6 1546 576 12 0 36 chr3 126049915 126049999 -33549784 + (GTTTG)n Simple_repeat Simple_repeat 2 82 0 6 1546 375 23 0 0 chr3 126050428 126050472 -33549311 + (TG)n Simple_repeat Simple_repeat 1 44 0 6 1546 29 28 0 0 chr3 126050506 126050542 -33549241 + AT_rich Low_complexity Low_complexity 1 36 0 6 1546 712 340 87 24 chr3 126050611 126051117 -33548666 + L1MA5 LINE L1 5395 5932 -368 6 1546 341 279 237 33 chr3 126052051 126052296 -33547487 - MLT2B3 LTR ERVL -8 709 415 6 1546 522 46 0 0 chr3 126052479 126052544 -33547239 + (GA)n Simple_repeat Simple_repeat 2 66 0 6 1546 544 176 0 0 chr3 126052751 126052842 -33546941 - Lx9 LINE L1 -446 7198 7108 6 1546 4008 159 91 28 chr3 126052842 126053680 -33546103 + RLTR13D6 LTR ERVK 1 929 0 6 1546 910 198 95 22 chr3 126053684 126053916 -33545867 - Lx9 LINE L1 -535 7109 6861 6 1546 883 284 72 36 chr3 126053914 126053979 -33545804 + Lx9 LINE L1 7185 7252 -392 6 1546 4090 52 79 0 chr3 126053979 126054498 -33545285 - LTRIS2 LTR ERV1 0 564 5 7 1546 883 284 72 36 chr3 126054498 126054874 -33544909 + Lx9 LINE L1 7253 7642 -2 6 1546 850 230 69 11 chr3 126055002 126055191 -33544592 - B3 SINE B2 -15 201 2 7 1546 23 0 0 0 chr3 126055220 126055243 -33544540 + AT_rich Low_complexity Low_complexity 1 23 0 7 1546 21 0 0 0 chr3 126056813 126056834 -33542949 + AT_rich Low_complexity Low_complexity 1 21 0 7 1546 30 0 0 0 chr3 126056911 126056941 -33542842 + AT_rich Low_complexity Low_complexity 1 30 0 7 1546 1573 170 231 14 chr3 126057435 126057781 -33542002 + MTC LTR MaLR 1 421 0 7 1546 410 351 13 13 chr3 126058532 126058688 -33541095 - LTR78 LTR ERV1 -1145 159 4 7 1546 1214 156 52 28 chr3 126059129 126059379 -33540404 + Lx3A LINE L1 6670 6925 -56 7 1546 2151 91 3 0 chr3 126059380 126059689 -33540094 - BGLII LTR ERVK 0 421 112 7 1546 323 100 0 0 chr3 126059689 126059739 -33540044 + Lx3A LINE L1 6927 6976 -5 7 1546 22 0 0 0 chr3 126059740 126059762 -33540021 + AT_rich Low_complexity Low_complexity 1 22 0 7 1546 1909 160 86 3 chr3 126059797 126060136 -33539647 - ORR1B2 LTR MaLR 0 367 1 8 1546 401 0 20 0 chr3 126060257 126060306 -33539477 + (TTTTG)n Simple_repeat Simple_repeat 2 51 0 8 1546 340 200 0 15 chr3 126060659 126060725 -33539058 - MIR SINE MIR -100 162 98 8 1546 306 0 0 0 chr3 126060797 126060831 -33538952 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 8 1546 3760 120 10 7 chr3 126060832 126061411 -33538372 - Lx2 LINE L1 -6 6991 6411 8 1546 600 341 4 4 chr3 126062122 126062349 -33537434 - Lx5 LINE L1 -672 6378 6152 8 1546 249 339 148 66 chr3 126062620 126062952 -33536831 + ORR1E LTR MaLR 1 359 0 8 1546 210 71 0 0 chr3 126064108 126064136 -33535647 + (TCTCTG)n Simple_repeat Simple_repeat 3 30 0 8 1546 881 137 74 88 chr3 126064136 126064352 -33535431 + ORR1C2 LTR MaLR 172 384 0 8 1546 248 291 25 0 chr3 126065862 126065941 -33533842 + GA-rich Low_complexity Low_complexity 2 82 0 8 1546 329 312 113 69 chr3 126065981 126066050 -33533733 + ID SINE ID 3 59 -165 9 1546 396 0 0 0 chr3 126066050 126066094 -33533689 + (TG)n Simple_repeat Simple_repeat 2 45 0 9 1546 329 312 113 69 chr3 126066094 126066227 -33533556 + ID_B1 SINE B4 60 213 -11 9 1546 357 93 0 0 chr3 126068187 126068241 -33531542 + (TGAA)n Simple_repeat Simple_repeat 3 56 0 9 1546 795 197 0 0 chr3 126069170 126069307 -33530476 + B1_Mur1 SINE Alu 5 141 -8 9 1546 223 271 0 0 chr3 126069342 126069390 -33530393 + GA-rich Low_complexity Low_complexity 1 48 0 9 1546 219 36 0 0 chr3 126069848 126069876 -33529907 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 9 1546 284 284 57 29 chr3 126070562 126070667 -33529116 - MER5A DNA MER1_type -2 187 80 9 1546 222 301 70 46 chr3 126070741 126070865 -33528918 - MIRc SINE MIR -40 228 111 9 1546 555 273 89 32 chr3 126071140 126071517 -33528266 - L1ME3A LINE L1 -282 5891 5484 9 1546 455 252 0 90 chr3 126071963 126072085 -33527698 + RSINE1 SINE B4 46 156 -9 9 1546 315 245 224 41 chr3 126072141 126072337 -33527446 - L1ME3A LINE L1 -1244 4902 4671 9 1546 506 361 129 8 chr3 126072340 126072728 -33527055 - L2 LINE L2 -1794 1625 1191 1 1546 228 386 113 6 chr3 126073185 126073539 -33526244 - L2 LINE L2 -2821 598 207 1 1546 207 0 0 0 chr3 126073907 126073930 -33525853 + (CA)n Simple_repeat Simple_repeat 2 24 0 1 1546 504 0 0 0 chr3 126073930 126073985 -33525798 + (GA)n Simple_repeat Simple_repeat 2 57 0 1 1546 818 244 35 53 chr3 126074003 126074345 -33525438 - RLTR15 LTR ERVK -13 346 11 1 1546 642 47 0 0 chr3 126074345 126074431 -33525352 + (TC)n Simple_repeat Simple_repeat 1 86 0 1 1546 270 0 0 0 chr3 126074431 126074460 -33525323 + (CA)n Simple_repeat Simple_repeat 1 30 0 1 1546 21 0 0 0 chr3 126074935 126074956 -33524827 + AT_rich Low_complexity Low_complexity 1 21 0 1 1546 2146 64 7 0 chr3 126074956 126075237 -33524546 - L1_Mus1 LINE L1 -2 6565 6283 1 1546 234 0 0 0 chr3 126075328 126075354 -33524429 + (A)n Simple_repeat Simple_repeat 1 26 0 1 1546 23 33 0 0 chr3 126075754 126075784 -33523999 + AT_rich Low_complexity Low_complexity 1 30 0 1 1546 7386 234 73 22 chr3 126076463 126076734 -33523049 - Lx7 LINE L1 0 7696 7376 1 1546 288 0 0 0 chr3 126076734 126076766 -33523017 + (CA)n Simple_repeat Simple_repeat 1 32 0 1 1546 7386 221 76 34 chr3 126076766 126078765 -33521018 - Lx7 LINE L1 -321 7375 5279 1 1546 1542 82 73 0 chr3 126078765 126078984 -33520799 - L1Md_F2 LINE L1 0 6582 6348 1 1546 2932 186 85 67 chr3 126078984 126079258 -33520525 - Lx7 LINE L1 -602 5278 5054 1 1546 23 33 0 0 chr3 126079797 126079827 -33519956 + AT_rich Low_complexity Low_complexity 1 30 0 1 1546 367 218 0 13 chr3 126079850 126079999 -33519784 + (TA)n Simple_repeat Simple_repeat 1 147 0 1 1546 351 0 0 0 chr3 126080318 126080357 -33519426 + (CA)n Simple_repeat Simple_repeat 1 39 0 1 1546 351 284 27 9 chr3 126080703 126080813 -33518970 + PB1D10 SINE Alu 3 114 -3 1 1546 930 237 0 17 chr3 126081313 126081493 -33518290 - B3 SINE B2 -5 211 35 1 1546 495 67 22 11 chr3 126081608 126081698 -33518085 + (TG)n Simple_repeat Simple_repeat 2 92 0 1 1546 479 252 28 41 chr3 126082028 126082173 -33517610 - ID_B1 SINE B4 -1 223 81 1 1546 273 331 27 54 chr3 126082231 126082378 -33517405 - MER5A DNA MER1_type -29 160 18 1 1546 226 160 20 0 chr3 126083004 126083054 -33516729 + T-rich Low_complexity Low_complexity 2 52 0 1 1546 1054 69 21 0 chr3 126083732 126083876 -33515907 + B1_Mus2 SINE Alu 1 147 0 1 1546 1158 99 0 0 chr3 126083886 126084117 -33515666 + (GAA)n Simple_repeat Simple_repeat 1 231 0 1 1546 258 227 26 26 chr3 126084837 126084914 -33514869 + ORR1D1 LTR MaLR 6 82 -292 1 1546 23 0 0 0 chr3 126085729 126085752 -33514031 + AT_rich Low_complexity Low_complexity 1 23 0 1 1546 946 128 47 0 chr3 126087219 126087368 -33512415 - B2_Mm2 SINE B2 -37 158 3 1 1546 384 209 0 0 chr3 126088839 126088930 -33510853 + (TA)n Simple_repeat Simple_repeat 1 91 0 1 1546 326 109 0 0 chr3 126089073 126089119 -33510664 - ORR1B1 LTR MaLR -8 386 341 1 1546 2100 159 3 6 chr3 126089129 126089470 -33510313 - ORR1B1 LTR MaLR -8 386 47 1 1546 1716 190 58 8 chr3 126089607 126089968 -33509815 + RLTR30 LTR ERV1 1 379 0 1 1546 228 286 0 16 chr3 126089969 126090033 -33509750 + CT-rich Low_complexity Low_complexity 4 66 0 1 193 6421 97 24 19 chr3 126091111 126091558 -33508225 - L1Md_F2 LINE L1 -8 6574 6136 1 1547 3313 68 28 2 chr3 126091558 126091983 -33507800 - RLTR10C LTR ERVK 0 436 1 1 1547 32792 80 22 3 chr3 126091983 126097705 -33502078 - L1Md_F2 LINE L1 -447 6135 301 1 1547 414 0 0 0 chr3 126098028 126098074 -33501709 + (CA)n Simple_repeat Simple_repeat 2 47 0 1 1547 898 295 78 26 chr3 126098100 126098576 -33501207 - L1MA4A LINE L1 -386 5917 5411 1 1547 4226 100 3 0 chr3 126098576 126099156 -33500627 - MT2B2 LTR ERVL 0 584 3 1 1547 898 332 72 34 chr3 126099156 126099647 -33500136 - L1MA4A LINE L1 -893 5410 4873 1 1547 186 103 0 0 chr3 126099651 126099680 -33500103 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 1 1547 288 0 0 0 chr3 126099691 126099723 -33500060 + (TG)n Simple_repeat Simple_repeat 2 33 0 1 1547 27 0 0 0 chr3 126100099 126100126 -33499657 + AT_rich Low_complexity Low_complexity 1 27 0 1 1547 1118 81 0 13 chr3 126100130 126100280 -33499503 + B1_Mus1 SINE Alu 1 148 0 1 1547 210 71 0 0 chr3 126101502 126101530 -33498253 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 1 1547 1094 69 21 0 chr3 126101869 126102013 -33497770 + B1_Mus2 SINE Alu 1 147 0 1 1547 21 36 0 0 chr3 126106106 126106134 -33493649 + AT_rich Low_complexity Low_complexity 1 28 0 1 1547 224 373 0 0 chr3 126106835 126106910 -33492873 + L3 LINE CR1 3932 4006 -483 1 1547 315 307 7 73 chr3 126107091 126107242 -33492541 + B4A SINE B4 2 142 -150 1 1547 310 203 0 17 chr3 126107246 126107306 -33492477 - PB1D10 SINE Alu -27 90 32 1 1547 283 256 177 13 chr3 126107306 126107325 -33492458 - ID_B1 SINE B4 -53 171 80 1 1547 26 0 0 0 chr3 126107544 126107570 -33492213 + AT_rich Low_complexity Low_complexity 1 26 0 1 1547 459 259 61 83 chr3 126107762 126108040 -33491743 - RLTR15 LTR ERVK -16 343 72 1 1547 411 204 17 50 chr3 126108029 126108148 -33491635 - RLTR15 LTR ERVK -244 115 1 1 1547 198 171 0 0 chr3 126108766 126108807 -33490976 + A-rich Low_complexity Low_complexity 1 41 0 1 1547 264 292 155 26 chr3 126109244 126109476 -33490307 - LTR37B LTR ERV1 -9 459 198 1 1547 394 294 170 59 chr3 126110255 126110526 -33489257 + RMER15 LTR ERVL 275 575 0 1 1547 297 173 19 0 chr3 126110818 126110870 -33488913 + URR1B DNA MER1_type 172 224 -1 1 1547 310 322 176 33 chr3 126111382 126111809 -33487974 - L2 LINE L2 -1240 2179 1692 1 1547 501 17 0 0 chr3 126111880 126111938 -33487845 + (TG)n Simple_repeat Simple_repeat 1 58 0 1 1547 214 343 226 10 chr3 126111988 126112294 -33487489 - L2 LINE L2 -1738 1681 1310 1 1547 307 340 96 51 chr3 126112294 126112525 -33487258 - MLT1A1 LTR MaLR -42 366 126 1 1547 363 390 32 0 chr3 126113022 126113176 -33486607 - L2 LINE L2 -2738 681 523 1 1547 23 33 0 0 chr3 126113233 126113263 -33486520 + AT_rich Low_complexity Low_complexity 1 30 0 1 1547 516 322 56 30 chr3 126113593 126113859 -33485924 + B4A SINE B4 2 274 -18 1 1547 261 290 33 86 chr3 126115105 126115256 -33484527 - L1MA4A LINE L1 -314 5986 5844 1 1547 333 0 0 0 chr3 126115268 126115305 -33484478 + (TG)n Simple_repeat Simple_repeat 1 37 0 1 1547 999 46 0 0 chr3 126117565 126117696 -33482087 - L1_Mus2 LINE L1 0 6566 6436 1 1547 183 184 0 0 chr3 126117985 126118023 -33481760 + GA-rich Low_complexity Low_complexity 1 38 0 1 1547 5287 147 32 4 chr3 126118205 126119043 -33480740 - Lx4A LINE L1 -3 7055 6194 1 1547 361 298 136 6 chr3 126119494 126119656 -33480127 + MER3 DNA MER1_type 9 191 -18 1 1547 1195 287 34 15 chr3 126119741 126120067 -33479716 + MTE2b LTR MaLR 12 343 -36 1 1547 906 294 71 37 chr3 126120433 126120811 -33478972 - MLT2D LTR ERVL -3 411 21 1 1547 462 309 41 54 chr3 126122302 126122326 -33477457 - B1F1 SINE Alu -2 147 3 1 1547 583 325 0 0 chr3 126122326 126122449 -33477334 - ID_B1 SINE B4 -18 206 84 1 1547 459 0 0 0 chr3 126122507 126122558 -33477225 + (TC)n Simple_repeat Simple_repeat 2 52 0 1 1547 3966 49 0 20 chr3 126123005 126123504 -33476279 - L1Md_F2 LINE L1 0 6582 6094 1 1547 316 337 98 106 chr3 126123564 126123839 -33475944 - B4A SINE B4 -18 274 2 1 1547 23 0 0 0 chr3 126123991 126124014 -33475769 + AT_rich Low_complexity Low_complexity 1 23 0 1 1547 294 207 32 65 chr3 126124364 126124457 -33475326 + Lx5 LINE L1 6898 6987 -63 1 1547 272 278 70 38 chr3 126125620 126125727 -33474056 + RSINE1 SINE B4 4 120 -45 1 1547 423 0 0 0 chr3 126125727 126125774 -33474009 + (TC)n Simple_repeat Simple_repeat 1 47 0 1 1547 272 278 70 38 chr3 126125774 126125823 -33473960 + RSINE1 SINE B4 121 165 0 1 1547 601 89 0 51 chr3 126125830 126125982 -33473801 - L1Md_F2 LINE L1 0 6582 6471 1 1547 4322 8 0 0 chr3 126125985 126126462 -33473321 - L1Md_T LINE L1 0 6582 6106 1 1547 209 401 56 0 chr3 126127614 126127776 -33472007 - L4 LINE RTE -1306 723 553 1 1547 411 246 25 104 chr3 126129293 126129401 -33470382 + Lx9 LINE L1 7350 7453 -191 1 1547 261 0 0 0 chr3 126129401 126129430 -33470353 + (TA)n Simple_repeat Simple_repeat 2 30 0 1 1547 411 246 25 104 chr3 126129430 126129639 -33470144 + Lx9 LINE L1 7454 7642 -2 1 1547 788 277 0 104 chr3 126130466 126130792 -33468991 + B4A SINE B4 1 292 0 1 1547 21 0 0 0 chr3 126131077 126131098 -33468685 + AT_rich Low_complexity Low_complexity 1 21 0 1 1547 23 54 0 0 chr3 126131769 126131806 -33467977 + AT_rich Low_complexity Low_complexity 1 37 0 1 1547 2468 69 0 21 chr3 126133066 126133406 -33466377 - MTB_Mm LTR MaLR 0 407 75 1 1547 204 329 49 0 chr3 126133652 126133734 -33466049 + L2c LINE L2 3251 3336 -51 1 1547 380 138 0 0 chr3 126134500 126134558 -33465225 + Lx7 LINE L1 7250 7307 -389 1 1547 1233 203 32 39 chr3 126134585 126134867 -33464916 - Lx7 LINE L1 -839 6857 6578 1 1547 1255 58 64 0 chr3 126134880 126135052 -33464731 - L1_Mus1 LINE L1 0 6567 6385 1 1547 910 36 0 0 chr3 126135052 126135164 -33464619 + L1_Mus1 LINE L1 6266 6377 -190 1 1547 920 262 112 23 chr3 126135202 126135550 -33464233 - Lx7 LINE L1 -1123 6573 6195 1 1547 756 0 0 0 chr3 126135566 126135650 -33464133 + (TAGA)n Simple_repeat Simple_repeat 4 87 0 1 1547 349 274 46 35 chr3 126135651 126135825 -33463958 - Lx7 LINE L1 -1656 6040 5865 1 1547 2251 201 62 36 chr3 126135819 126136429 -33463354 - Lx7 LINE L1 -774 5106 4481 1 1547 22 56 0 0 chr3 126136840 126136876 -33462907 + AT_rich Low_complexity Low_complexity 1 36 0 1 1547 224 369 69 8 chr3 126138086 126138217 -33461566 + MIRc SINE MIR 113 251 -17 1 1547 319 296 120 17 chr3 126138334 126138451 -33461332 - MIRb SINE MIR -107 161 33 1 1547 184 185 37 0 chr3 126138773 126138827 -33460956 + CT-rich Low_complexity Low_complexity 1 56 0 1 1547 474 288 48 41 chr3 126139494 126139639 -33460144 - B4A SINE B4 -100 192 47 1 1547 45 45 0 0 chr3 126139654 126139720 -33460063 + AT_rich Low_complexity Low_complexity 1 66 0 1 1547 24 0 0 0 chr3 126140650 126140674 -33459109 + AT_rich Low_complexity Low_complexity 1 24 0 1 1547 21 0 0 0 chr3 126143003 126143024 -33456759 + AT_rich Low_complexity Low_complexity 1 21 0 1 1547 695 234 43 0 chr3 126144209 126144350 -33455433 + B1_Mur1 SINE Alu 3 149 0 1 1547 1728 189 42 14 chr3 126145935 126146295 -33453488 - ORR1D1 LTR MaLR -4 370 1 1 1547 2908 227 90 60 chr3 126146330 126147197 -33452586 + RMER13B LTR ERVK 5 897 -11 2 1547 321 280 80 0 chr3 126147206 126147281 -33452502 - B1F2 SINE Alu -68 81 1 2 1547 340 228 0 0 chr3 126147225 126147282 -33452501 - ID_B1 SINE B4 -87 137 81 2 1547 200 86 0 28 chr3 126147664 126147700 -33452083 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 2 1547 314 88 59 0 chr3 126148783 126148851 -33450932 + (TA)n Simple_repeat Simple_repeat 2 73 0 2 1547 24 0 0 0 chr3 126149145 126149169 -33450614 + AT_rich Low_complexity Low_complexity 1 24 0 2 1547 21 0 0 0 chr3 126150941 126150962 -33448821 + AT_rich Low_complexity Low_complexity 1 21 0 2 1547 395 230 10 39 chr3 126151009 126151113 -33448670 + PB1D10 SINE Alu 3 103 -14 2 1547 441 0 0 0 chr3 126151118 126151167 -33448616 + (GA)n Simple_repeat Simple_repeat 2 50 0 2 1547 494 155 10 0 chr3 126151163 126151260 -33448523 + GA-rich Low_complexity Low_complexity 2 99 0 2 1547 252 214 0 0 chr3 126152354 126152410 -33447373 + (CGTG)n Simple_repeat Simple_repeat 1 56 0 2 1547 493 320 146 39 chr3 126152413 126152667 -33447116 - B4A SINE B4 -1 291 11 2 1547 272 367 11 22 chr3 126152874 126153055 -33446728 + L1ME1 LINE L1 5966 6144 -35 2 1547 229 294 71 48 chr3 126153461 126153629 -33446154 + L1M5 LINE L1 5634 5805 -368 2 1547 1691 174 44 19 chr3 126153687 126154051 -33445732 + ORR1D1 LTR MaLR 1 373 -1 2 1547 359 364 17 11 chr3 126154496 126154674 -33445109 + Charlie13b DNA Charlie 327 505 -7 2 1547 810 203 0 0 chr3 126155360 126155508 -33444275 - B1_Mur4 SINE Alu -1 149 2 2 1547 21 36 0 0 chr3 126155515 126155543 -33444240 + AT_rich Low_complexity Low_complexity 1 28 0 2 1547 240 280 16 202 chr3 126155834 126156022 -33443761 + RSINE1 SINE B4 12 164 -1 2 1547 350 247 11 21 chr3 126157429 126157524 -33442259 - MTEa LTR MaLR -31 348 255 2 1547 1090 291 58 16 chr3 126157837 126158201 -33441582 + RMER20A LTR ERVK 133 511 -5 2 1547 285 75 0 0 chr3 126158201 126158241 -33441542 + (CA)n Simple_repeat Simple_repeat 1 40 0 2 1547 958 287 73 38 chr3 126158306 126158650 -33441133 - ORR1E LTR MaLR 0 359 4 2 1547 318 319 68 27 chr3 126158947 126159095 -33440688 + L3 LINE CR1 4211 4364 -125 2 1547 234 148 0 0 chr3 126159341 126159395 -33440388 + (CAAAA)n Simple_repeat Simple_repeat 2 55 0 2 1547 229 288 53 26 chr3 126159998 126160112 -33439671 + Lx7 LINE L1 7563 7679 -17 2 1547 398 269 151 0 chr3 126160476 126160595 -33439188 + B1F SINE Alu 3 139 -10 2 1547 5186 37 0 3 chr3 126160912 126161530 -33438253 + L1Md_F2 LINE L1 5965 6580 -2 2 1547 644 328 60 28 chr3 126162603 126162885 -33436898 + B4A SINE B4 2 292 0 2 1547 197 108 27 0 chr3 126162886 126162923 -33436860 + (CA)n Simple_repeat Simple_repeat 2 39 0 2 1547 3602 235 45 27 chr3 126163405 126164837 -33434946 - L1_Rod LINE L1 -3406 2441 986 2 1547 246 212 106 0 chr3 126164891 126164957 -33434826 - L1_Rod LINE L1 -6622 986 914 2 1547 309 252 48 0 chr3 126166275 126166378 -33433405 - L1_Rod LINE L1 -4019 1828 1721 2 1547 21 0 0 0 chr3 126167130 126167151 -33432632 + AT_rich Low_complexity Low_complexity 1 21 0 2 1547 410 287 25 27 chr3 126167270 126167425 -33432358 - MTE2b LTR MaLR -4 375 228 2 1547 691 138 43 0 chr3 126167438 126167554 -33432229 + RMER4B LTR ERVK 465 585 0 2 1547 26 0 0 0 chr3 126167714 126167740 -33432043 + AT_rich Low_complexity Low_complexity 1 26 0 2 1547 26 30 0 0 chr3 126168522 126168555 -33431228 + AT_rich Low_complexity Low_complexity 1 33 0 2 1547 183 400 29 0 chr3 126168855 126168925 -33430858 + L4 LINE RTE 1110 1181 -848 2 1547 2067 131 0 0 chr3 126169059 126169373 -33430410 - Lx2 LINE L1 -365 6632 6319 2 1547 1707 108 91 36 chr3 126169371 126169679 -33430104 + Lx2 LINE L1 6666 6990 -7 2 1547 21 36 0 0 chr3 126169679 126169707 -33430076 + AT_rich Low_complexity Low_complexity 1 28 0 2 1547 377 156 0 13 chr3 126170190 126170268 -33429515 + (CA)n Simple_repeat Simple_repeat 1 77 0 2 1547 549 0 0 0 chr3 126170268 126170329 -33429454 + (GA)n Simple_repeat Simple_repeat 2 62 0 2 1547 1444 176 15 200 chr3 126171233 126171688 -33428095 - ORR1D1 LTR MaLR 0 374 4 2 1547 236 278 93 56 chr3 126171701 126171827 -33427956 - MIRc SINE MIR -76 186 59 2 1547 2247 79 3 9 chr3 126172795 126173113 -33426670 - L1_Mus2 LINE L1 0 6566 6251 2 1547 510 17 0 0 chr3 126173283 126173342 -33426441 + (TC)n Simple_repeat Simple_repeat 2 60 0 2 1547 434 18 18 0 chr3 126173363 126173418 -33426365 + (CA)n Simple_repeat Simple_repeat 2 57 0 2 1547 536 251 176 23 chr3 126173454 126173760 -33426023 - L1MA4 LINE L1 -372 5928 5576 2 1547 21 57 0 0 chr3 126174175 126174210 -33425573 + AT_rich Low_complexity Low_complexity 1 35 0 2 1547 1382 79 11 0 chr3 126174230 126174420 -33425363 + B2_Mm1t SINE B2 2 193 0 2 1547 21 36 0 0 chr3 126174510 126174538 -33425245 + AT_rich Low_complexity Low_complexity 1 28 0 2 1547 1725 50 0 26 chr3 126174538 126174765 -33425018 - L1_Mus1 LINE L1 -1 6566 6346 2 1547 2047 118 3 9 chr3 126174817 126175133 -33424650 + L1_Mus4 LINE L1 6323 6636 0 2 1547 718 320 102 3 chr3 126175394 126175758 -33424025 + Lx8 LINE L1 6244 6643 -830 2 1547 23 78 0 0 chr3 126178526 126178577 -33421206 + AT_rich Low_complexity Low_complexity 1 51 0 2 1547 385 343 11 70 chr3 126178624 126178809 -33420974 - MIR SINE MIR -76 186 13 2 1547 182 194 13 40 chr3 126178843 126178918 -33420865 + (TA)n Simple_repeat Simple_repeat 1 73 0 2 1547 626 256 0 0 chr3 126179002 126179131 -33420652 - B1F1 SINE Alu 0 149 21 2 1547 486 33 0 0 chr3 126179220 126179280 -33420503 + (CA)n Simple_repeat Simple_repeat 1 60 0 2 1547 28 0 0 0 chr3 126180307 126180335 -33419448 + AT_rich Low_complexity Low_complexity 1 28 0 2 1547 432 278 70 54 chr3 126180734 126180884 -33418899 + ORR1E LTR MaLR 3 159 -200 2 1547 1107 199 199 31 chr3 126180884 126181041 -33418742 + ORR1C1 LTR MaLR 3 197 -181 2 1547 617 38 12 0 chr3 126181041 126181121 -33418662 + (TC)n Simple_repeat Simple_repeat 2 82 0 2 1547 1107 199 199 31 chr3 126181121 126181285 -33418498 + ORR1C1 LTR MaLR 198 377 -1 2 1547 432 278 70 54 chr3 126181285 126181320 -33418463 + ORR1E LTR MaLR 160 191 -168 2 1547 226 277 46 46 chr3 126181458 126181545 -33418238 + ORR1E LTR MaLR 321 407 0 2 1547 2332 324 168 30 chr3 126181548 126182887 -33416896 + ORR1E-int LTR MaLR 1 1551 -29 2 1547 22 35 0 0 chr3 126182988 126183017 -33416766 + AT_rich Low_complexity Low_complexity 1 29 0 2 1547 4168 200 69 57 chr3 126183088 126184732 -33415051 + Lx6 LINE L1 611 2293 -3587 2 1547 6838 178 4 38 chr3 126184728 126185498 -33414285 + Lx6 LINE L1 5064 5827 -1633 2 1547 221 53 53 0 chr3 126185498 126185536 -33414247 + (CAAA)n Simple_repeat Simple_repeat 2 41 0 2 1547 6838 211 42 37 chr3 126185536 126186971 -33412812 + Lx6 LINE L1 5828 7283 -177 2 1547 6482 109 47 4 chr3 126186960 126187984 -33411799 - Lx LINE L1 0 6654 5587 2 1547 4709 148 17 39 chr3 126187991 126188890 -33410893 + Lx LINE L1 4661 5539 -344 2 1547 556 264 8 0 chr3 126188893 126189022 -33410761 + Lx6 LINE L1 7270 7399 -61 2 1547 320 237 40 70 chr3 126189022 126189122 -33410661 - B3 SINE B2 -17 199 103 2 1547 8524 8 1 0 chr3 126189135 126190230 -33409553 - L1Md_T LINE L1 0 6582 5487 2 1547 1209 264 125 58 chr3 126190278 126191155 -33408628 + L1M2 LINE L1 4610 5545 -746 2 1547 233 194 22 49 chr3 126191245 126191429 -33408354 + (TA)n Simple_repeat Simple_repeat 2 180 0 2 1547 2704 43 0 0 chr3 126191543 126191870 -33407913 - L1Md_F2 LINE L1 0 6582 6256 2 1547 274 58 19 37 chr3 126193080 126193134 -33406649 + (TTTG)n Simple_repeat Simple_repeat 2 54 0 2 1547 698 229 94 10 chr3 126193144 126193347 -33406436 - ID_B1 SINE B4 -2 222 3 2 1547 185 396 51 25 chr3 126193994 126194191 -33405592 - L2 LINE L2 -557 2862 2661 2 1547 1618 183 61 42 chr3 126195196 126195556 -33404227 + ORR1B2 LTR MaLR 1 367 0 2 1547 194 211 0 81 chr3 126196162 126196224 -33403559 + L3 LINE CR1 1364 1420 -3069 2 1547 532 238 18 48 chr3 126197280 126197448 -33402335 + Lx4A LINE L1 6890 7052 -6 2 1547 3244 57 0 0 chr3 126198086 126198487 -33401296 - L1Md_F2 LINE L1 -14 6568 6168 2 1547 386 360 87 37 chr3 126198488 126198788 -33400995 + MLT1E2 LTR MaLR 164 478 -149 2 1547 230 228 70 0 chr3 126199328 126199385 -33400398 - MLT2B4 LTR ERVL -494 62 2 2 1547 1002 187 34 129 chr3 126199749 126200105 -33399678 - RLTRETN_Mm LTR ERVK 0 322 1 2 1547 240 35 0 0 chr3 126200879 126200908 -33398875 + (CA)n Simple_repeat Simple_repeat 2 30 0 2 1547 459 0 0 0 chr3 126200908 126200958 -33398825 + (GA)n Simple_repeat Simple_repeat 2 52 0 2 1547 319 402 147 25 chr3 126200962 126201358 -33398425 - LTR16E2 LTR ERVL -32 536 93 2 1547 262 362 0 0 chr3 126201818 126201898 -33397885 - ID4_ SINE ID -3 80 1 2 1547 22 35 0 0 chr3 126202610 126202639 -33397144 + AT_rich Low_complexity Low_complexity 1 29 0 2 1547 341 357 69 23 chr3 126202822 126202997 -33396786 - B3A SINE B2 -15 183 1 2 1547 192 111 0 0 chr3 126203969 126204005 -33395778 + (T)n Simple_repeat Simple_repeat 1 36 0 2 1547 261 57 0 0 chr3 126205043 126205078 -33394705 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 2 1547 1251 235 165 19 chr3 126205675 126206039 -33393744 - MTD LTR MaLR 0 419 3 2 1547 1306 266 75 80 chr3 126206134 126206706 -33393077 + RMER15 LTR ERVL 4 572 -3 2 1547 307 175 18 0 chr3 126207036 126207093 -33392690 - ORR1B2 LTR MaLR -8 386 329 2 1547 1096 210 71 62 chr3 126207094 126207550 -33392233 - RLTR20C LTR ERVK -4 574 1 2 1547 1419 139 153 8 chr3 126207550 126207817 -33391966 - ORR1B2 LTR MaLR -61 306 1 2 1547 1173 81 0 0 chr3 126207870 126208018 -33391765 + B1_Mus1 SINE Alu 1 148 0 2 1547 805 327 72 4 chr3 126208267 126208531 -33391252 + B4A SINE B4 8 289 -3 2 1547 26 30 0 0 chr3 126209300 126209333 -33390450 + AT_rich Low_complexity Low_complexity 1 33 0 2 1547 1564 171 39 127 chr3 126210032 126210441 -33389342 + L1_Mur2 LINE L1 334 706 -6006 2 1547 513 234 12 25 chr3 126210441 126210603 -33389180 + L1_Mur1 LINE L1 208 367 -6617 2 1547 4952 104 59 5 chr3 126210604 126212028 -33387755 + L1_Mur1 LINE L1 661 2065 -3821 2 1547 1013 124 104 0 chr3 126212026 126212228 -33387555 + Lx3_Mus LINE L1 5997 6219 -790 2 1547 3290 81 11 11 chr3 126212228 126212677 -33387106 - RLTR44B LTR ERVK 0 449 1 3 1547 15452 42 1 4 chr3 126212677 126214619 -33385164 - RLTR44-int LTR ERVK 0 2812 877 3 1547 344 161 136 0 chr3 126214629 126214710 -33385073 - RLTR44-int LTR ERVK -2720 92 1 3 1547 3324 88 9 7 chr3 126214710 126215158 -33384625 - RLTR44B LTR ERVK 0 449 1 3 1547 5459 93 26 8 chr3 126215158 126215929 -33383854 + Lx3_Mus LINE L1 6214 6998 -11 2 1547 329 141 0 0 chr3 126215933 126215997 -33383786 + L1_Mur2 LINE L1 687 750 -5962 3 1547 313 312 7 14 chr3 126216155 126216295 -33383488 + Lx6 LINE L1 7278 7416 -44 3 1547 1402 22 11 0 chr3 126216313 126216491 -33383292 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 3 1547 252 100 0 0 chr3 126216491 126216531 -33383252 + (CAGA)n Simple_repeat Simple_repeat 1 40 0 3 1547 290 324 53 90 chr3 126216862 126217159 -33382624 + MLT1G3 LTR MaLR 210 477 -114 3 1547 268 343 7 130 chr3 126217503 126217657 -33382126 - MLT1I LTR MaLR -256 155 21 3 1547 348 186 17 0 chr3 126217669 126217737 -33382046 - ID4 SINE ID -59 93 25 3 1547 582 181 23 23 chr3 126218027 126218202 -33381581 + CT-rich Low_complexity Low_complexity 3 177 0 3 1547 2114 172 49 10 chr3 126219074 126219479 -33380304 + MTC LTR MaLR 1 421 0 3 1547 210 337 29 19 chr3 126219947 126220050 -33379733 - MIR SINE MIR -71 191 88 3 1547 2032 177 38 23 chr3 126220491 126220884 -33378899 - RMER20B LTR ERVK -223 404 6 3 1547 441 0 0 0 chr3 126220953 126221002 -33378781 + (TG)n Simple_repeat Simple_repeat 1 49 0 3 1547 444 67 0 0 chr3 126221014 126221074 -33378709 + (TA)n Simple_repeat Simple_repeat 2 61 0 3 1547 226 341 72 39 chr3 126221470 126221567 -33378216 - RMER17D LTR ERVK -328 561 465 3 1547 1106 95 0 7 chr3 126221567 126221716 -33378067 + B1_Mus1 SINE Alu 1 148 0 3 1547 226 341 72 39 chr3 126221716 126221798 -33377985 - RMER17D LTR ERVK -425 464 377 3 193 2108 232 62 87 chr3 126221946 126222801 -33376982 + RLTR19-int LTR ERVK 3457 4290 -1847 3 1548 2156 42 8 0 chr3 126222808 126223073 -33376710 + L1Md_F2 LINE L1 6313 6579 -3 3 1548 1201 259 56 8 chr3 126223136 126223510 -33376273 - L1M2 LINE L1 -1080 5063 4672 3 1548 2427 17 0 0 chr3 126223506 126223796 -33375987 - L1Md_F2 LINE L1 -541 6041 5752 3 1548 3918 48 4 0 chr3 126223796 126224275 -33375508 + L1Md_F2 LINE L1 6087 6567 -15 3 1548 393 258 62 62 chr3 126224290 126224468 -33375315 - L1M2 LINE L1 -1455 4688 4511 3 1548 222 220 197 0 chr3 126224499 126224582 -33375201 + B4 SINE B4 2 99 -193 3 1548 603 218 52 12 chr3 126224588 126224825 -33374958 - RMER4B LTR ERVK 0 585 298 3 1548 942 149 19 0 chr3 126224821 126224982 -33374801 - RMER4B LTR ERVK -405 180 17 3 1548 291 202 0 0 chr3 126225116 126225200 -33374583 + CT-rich Low_complexity Low_complexity 2 85 0 3 1548 356 291 23 17 chr3 126225270 126225445 -33374338 - L1M2 LINE L1 -1689 4454 4279 3 1548 1639 146 88 10 chr3 126225589 126225894 -33373889 - ORR1A4 LTR MaLR 0 329 1 3 1548 494 314 57 7 chr3 126226982 126227123 -33372660 - RSINE1 SINE B4 -6 159 12 3 1548 3338 110 0 36 chr3 126227151 126227671 -33372112 - L1Md_F2 LINE L1 0 6582 6082 3 1548 727 216 129 0 chr3 126228585 126228756 -33371027 + MTD LTR MaLR 223 415 -4 3 1548 198 0 0 0 chr3 126229013 126229035 -33370748 + (TC)n Simple_repeat Simple_repeat 1 22 0 3 1548 267 350 142 12 chr3 126229189 126229359 -33370424 - ID_B1 SINE B4 -19 273 78 3 1548 387 0 0 0 chr3 126230093 126230136 -33369647 + (CA)n Simple_repeat Simple_repeat 2 44 0 3 1548 340 317 4 106 chr3 126230819 126230874 -33368909 + Lx5 LINE L1 901 955 -5702 3 1548 5053 152 51 7 chr3 126230874 126231731 -33368052 + Lx4A LINE L1 6161 7055 -3 3 1548 1690 158 34 3 chr3 126231731 126232280 -33367503 + Lx5 LINE L1 941 1556 -4321 3 1548 5908 149 10 19 chr3 126232286 126233409 -33366374 + Lx5 LINE L1 3298 4410 -1467 3 1548 231 119 0 106 chr3 126233411 126233458 -33366325 - RMER19C LTR ERVK -1 610 569 3 1548 815 77 0 0 chr3 126233484 126233588 -33366195 - B1_Mus2 SINE Alu -5 142 39 3 1548 1635 179 243 26 chr3 126233624 126234003 -33365780 - RMER19C LTR ERVK -150 461 1 3 1548 6462 170 63 25 chr3 126234003 126235294 -33364489 + Lx5 LINE L1 4406 5750 -127 3 1548 927 178 20 25 chr3 126235294 126235490 -33364293 + B2_Mm2 SINE B2 1 195 0 3 1548 6462 209 51 26 chr3 126235490 126236754 -33363029 + Lx5 LINE L1 5751 7044 -6 3 1548 26 0 0 0 chr3 126236902 126236928 -33362855 + AT_rich Low_complexity Low_complexity 1 26 0 3 1548 327 277 40 142 chr3 126237509 126237745 -33362038 - MIRc SINE MIR -41 227 11 3 1548 528 274 55 23 chr3 126239609 126239833 -33359950 - MIR SINE MIR -19 249 16 3 1548 595 289 42 10 chr3 126239940 126240132 -33359651 + B3 SINE B2 2 199 -17 3 1548 1054 64 0 47 chr3 126240218 126240366 -33359417 + B1_Mus1 SINE Alu 1 141 -7 3 1548 324 0 0 0 chr3 126240369 126240405 -33359378 + (GAA)n Simple_repeat Simple_repeat 1 36 0 3 1548 352 271 156 40 chr3 126240406 126240579 -33359204 + RMER30 DNA MER1_type 10 202 0 3 1548 495 73 0 0 chr3 126241014 126241082 -33358701 + (GGA)n Simple_repeat Simple_repeat 3 70 0 3 1548 387 312 125 14 chr3 126241730 126241938 -33357845 - MLT1A LTR MaLR -136 238 8 3 1548 310 320 6 44 chr3 126241941 126242101 -33357682 - MIR SINE MIR -37 225 72 3 1548 207 0 0 0 chr3 126242459 126242482 -33357301 + (CAA)n Simple_repeat Simple_repeat 2 24 0 3 1548 924 36 0 0 chr3 126244002 126244114 -33355669 + (TC)n Simple_repeat Simple_repeat 2 113 0 3 1548 256 292 14 14 chr3 126244527 126244600 -33355183 - ID4_ SINE ID -3 80 8 3 1548 2179 216 109 15 chr3 126244780 126245396 -33354387 - Lx9 LINE L1 -4 7640 6967 3 1548 4040 94 26 0 chr3 126245543 126246148 -33353635 - L1_Mm LINE L1 -1244 4639 4019 3 1548 5947 64 3 4 chr3 126246148 126246914 -33352869 + L1_Mus3 LINE L1 5874 6638 0 3 1548 382 285 113 78 chr3 126246928 126247069 -33352714 + B4 SINE B4 5 150 -142 3 1548 8829 120 29 6 chr3 126247117 126247305 -33352478 - Lx4A LINE L1 -3 7055 6870 3 1548 2894 86 39 0 chr3 126247305 126247690 -33352093 - MTB LTR MaLR 0 400 1 3 1548 8829 115 29 14 chr3 126247690 126249730 -33350053 - Lx4A LINE L1 -189 6869 4785 3 1548 885 143 168 5 chr3 126251263 126251453 -33348330 - URR1A DNA MER1_type -3 223 3 3 1548 542 314 33 110 chr3 126251565 126251709 -33348074 - MER34 LTR ERV1 -6 536 392 3 1548 774 261 15 10 chr3 126251709 126251910 -33347873 + B3 SINE B2 2 203 -13 3 1548 542 314 33 110 chr3 126251910 126252101 -33347682 - MER34 LTR ERV1 -151 391 227 3 1548 795 282 46 0 chr3 126252088 126252283 -33347500 - B3 SINE B2 -6 210 7 3 1548 368 340 36 32 chr3 126252348 126252567 -33347216 - MER34 LTR ERV1 -351 220 1 3 1548 637 287 21 7 chr3 126252806 126252950 -33346833 + RSINE1 SINE B4 3 148 -17 3 1548 411 21 0 0 chr3 126252953 126253001 -33346782 + (CA)n Simple_repeat Simple_repeat 1 48 0 3 1548 410 309 152 13 chr3 126253647 126253883 -33345900 - L1ME3A LINE L1 -45 6128 5860 3 1548 344 184 0 0 chr3 126253942 126254018 -33345765 - Lx9 LINE L1 -7 7637 7562 3 1548 226 194 83 0 chr3 126254040 126254112 -33345671 - Lx9 LINE L1 -61 7583 7506 3 1548 1965 112 3 14 chr3 126254113 126254404 -33345379 + ORR1A2 LTR MaLR 32 319 -8 3 1548 2202 146 44 18 chr3 126254581 126254965 -33344818 - ORR1B1 LTR MaLR 0 394 1 3 1548 314 321 146 37 chr3 126255048 126255294 -33344489 - L1ME3A LINE L1 -1350 4796 4524 3 1548 608 272 253 27 chr3 126255515 126255738 -33344045 + MTD LTR MaLR 12 302 -117 3 1548 918 211 338 30 chr3 126255738 126256069 -33343714 + RLTR20C LTR ERVK 1 443 -91 3 1548 432 0 0 0 chr3 126256069 126256117 -33343666 + (TG)n Simple_repeat Simple_repeat 1 48 0 3 1548 441 252 88 50 chr3 126256117 126256213 -33343570 + RLTR20C LTR ERVK 444 533 -1 3 1548 633 231 26 45 chr3 126256213 126256358 -33343425 + MTD LTR MaLR 277 417 -2 3 1548 417 54 0 0 chr3 126256764 126256820 -33342963 + (TA)n Simple_repeat Simple_repeat 2 57 0 3 1548 489 291 37 37 chr3 126257271 126257517 -33342266 + RLTR42-int LTR ERVK 1156 1401 -4121 3 1548 374 328 0 8 chr3 126257954 126258080 -33341703 - RMER15 LTR ERVL -57 518 394 3 1548 966 304 53 16 chr3 126258190 126258494 -33341289 + MTE2b LTR MaLR 59 373 -6 3 1548 534 16 0 0 chr3 126258577 126258640 -33341143 + (TG)n Simple_repeat Simple_repeat 1 63 0 3 1548 721 284 0 0 chr3 126259611 126259759 -33340024 + B1_Mur1 SINE Alu 1 148 -1 3 1548 304 306 0 0 chr3 126259836 126259908 -33339875 + B4 SINE B4 8 79 -213 3 1548 244 340 0 85 chr3 126259977 126260083 -33339700 + B4 SINE B4 196 292 0 3 1548 393 277 14 28 chr3 126260128 126260269 -33339514 + B1F2 SINE Alu 4 142 -7 3 1548 3196 84 19 9 chr3 126261669 126262102 -33337681 - RLTR9B LTR ERVK 0 437 1 3 1548 184 30 29 29 chr3 126262478 126262512 -33337271 + (TTTTTG)n Simple_repeat Simple_repeat 4 37 0 3 1548 1217 112 39 11 chr3 126263045 126263226 -33336557 + B2_Mm2 SINE B2 1 186 -9 3 1548 245 313 0 0 chr3 126264772 126264856 -33334927 - ID4_ SINE ID -59 93 10 3 1548 356 287 115 82 chr3 126265058 126265240 -33334543 - MLT1A1 LTR MaLR -205 203 16 3 1548 1640 198 112 3 chr3 126265759 126266098 -33333685 + ORR1C1 LTR MaLR 3 378 0 3 1548 221 0 0 33 chr3 126268741 126268771 -33331012 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 3 1548 204 97 0 0 chr3 126269106 126269137 -33330646 + (TG)n Simple_repeat Simple_repeat 1 31 0 3 1548 263 271 98 45 chr3 126269573 126269685 -33330098 - ID_B1 SINE B4 0 224 107 3 1548 1286 217 79 132 chr3 126269764 126270097 -33329686 + ORR1C2 LTR MaLR 3 310 -74 3 1548 2960 59 28 3 chr3 126270097 126270486 -33329297 + MTB LTR MaLR 2 400 0 3 1548 1286 217 79 132 chr3 126270486 126270497 -33329286 + ORR1C2 LTR MaLR 311 315 -69 3 1548 495 48 0 0 chr3 126270497 126270559 -33329224 + (TG)n Simple_repeat Simple_repeat 2 63 0 3 1548 1286 217 79 132 chr3 126270559 126270616 -33329167 + ORR1C2 LTR MaLR 316 383 -1 3 1548 4133 167 118 17 chr3 126271112 126271982 -33327801 + RMER17B LTR ERVK 1 958 0 3 1548 21 36 0 0 chr3 126273299 126273327 -33326456 + AT_rich Low_complexity Low_complexity 1 28 0 3 1548 978 224 45 5 chr3 126273328 126273530 -33326253 + B3 SINE B2 7 216 0 3 1548 1012 221 24 36 chr3 126274115 126274374 -33325409 - ORR1B1 LTR MaLR -8 411 156 3 1548 200 384 44 9 chr3 126274710 126274823 -33324960 + L2 LINE L2 1173 1289 -2130 3 1548 303 270 92 26 chr3 126275082 126275203 -33324580 - B4 SINE B4 -130 162 38 3 1548 1573 268 49 27 chr3 126275204 126275614 -33324169 + MTD LTR MaLR 1 419 0 3 1548 222 179 0 0 chr3 126275616 126275655 -33324128 - RSINE1 SINE B4 -124 41 3 3 1548 972 314 100 48 chr3 126277186 126277316 -33322467 + MT2A LTR ERVL 8 137 -396 3 1548 729 122 0 0 chr3 126277316 126277431 -33322352 + (TA)n Simple_repeat Simple_repeat 1 115 0 3 1548 972 314 100 48 chr3 126277431 126277798 -33321985 + MT2A LTR ERVL 138 531 -2 3 1548 877 208 0 7 chr3 126277860 126278010 -33321773 - B1_Mur4 SINE Alu -1 149 1 3 1548 21 36 0 0 chr3 126278010 126278038 -33321745 + AT_rich Low_complexity Low_complexity 1 28 0 3 1548 501 337 102 68 chr3 126278815 126278962 -33320821 - MER34A1 LTR ERV1 -77 510 379 4 1548 778 247 41 26 chr3 126278962 126279157 -33320626 - B3A SINE B2 0 198 1 4 1548 501 337 102 68 chr3 126279157 126279391 -33320392 - MER34A1 LTR ERV1 -209 378 116 4 1548 387 221 8 16 chr3 126279523 126279652 -33320131 + (TA)n Simple_repeat Simple_repeat 2 129 0 4 1548 272 284 8 33 chr3 126279662 126279782 -33320001 - MER53 DNA hAT -71 122 6 4 1548 321 181 0 46 chr3 126280556 126280605 -33319178 - BC1_Mm scRNA scRNA -30 122 76 4 1548 294 29 0 0 chr3 126280605 126280640 -33319143 + (TTG)n Simple_repeat Simple_repeat 2 36 0 4 1548 321 181 0 46 chr3 126280640 126280677 -33319106 - BC1_Mm scRNA scRNA -77 75 40 4 1548 309 51 0 0 chr3 126281098 126281137 -33318646 + (TAAAA)n Simple_repeat Simple_repeat 2 40 0 4 1548 217 128 0 41 chr3 126281149 126281198 -33318585 + (CTGGGG)n Simple_repeat Simple_repeat 3 49 0 4 1548 198 71 0 0 chr3 126281281 126281309 -33318474 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 4 1548 767 238 82 159 chr3 126282131 126282596 -33317187 - RMER10A LTR ERVL -13 429 1 4 1548 1098 80 0 0 chr3 126282651 126282801 -33316982 + (TAGA)n Simple_repeat Simple_repeat 4 153 0 4 1548 2008 232 12 10 chr3 126283402 126283812 -33315971 - MTD LTR MaLR -8 411 1 4 1548 260 263 74 0 chr3 126285181 126285276 -33314507 + MER21B LTR ERV1 614 715 -148 4 1548 1368 245 55 57 chr3 126286127 126286547 -33313236 + MTD LTR MaLR 1 419 0 4 1548 904 309 38 11 chr3 126286607 126286869 -33312914 + B4 SINE B4 1 269 -23 4 1548 282 125 0 0 chr3 126286871 126286919 -33312864 + (CA)n Simple_repeat Simple_repeat 2 49 0 4 1548 294 227 11 43 chr3 126286929 126287021 -33312762 + (TATG)n Simple_repeat Simple_repeat 2 90 0 4 1548 272 216 10 0 chr3 126287027 126287129 -33312654 + (CA)n Simple_repeat Simple_repeat 2 104 0 4 1548 272 269 63 56 chr3 126287596 126287620 -33312163 - MTEa LTR MaLR 0 370 349 4 1548 4088 39 4 0 chr3 126287620 126288080 -33311703 - L1Md_F3 LINE L1 -2 6582 6121 4 1548 400 214 25 50 chr3 126288080 126288197 -33311586 - MTEa LTR MaLR -22 348 228 4 1548 272 264 156 8 chr3 126288180 126288302 -33311481 - MLT2B5 LTR ERVL -349 252 113 4 1548 471 301 23 62 chr3 126288221 126288398 -33311385 - MTEa LTR MaLR -209 170 1 4 1548 479 239 0 0 chr3 126288890 126289024 -33310759 + (CATATA)n Simple_repeat Simple_repeat 3 136 0 4 1548 183 220 0 0 chr3 126289462 126289512 -33310271 + (TG)n Simple_repeat Simple_repeat 1 50 0 4 1548 475 322 57 34 chr3 126289518 126289695 -33310088 - B3A SINE B2 -16 182 2 4 1548 23 54 0 0 chr3 126289725 126289762 -33310021 + AT_rich Low_complexity Low_complexity 1 37 0 4 1548 372 285 93 41 chr3 126290620 126290814 -33308969 - MLT1J1 LTR MaLR -127 317 114 4 1548 734 283 64 131 chr3 126291175 126291626 -33308157 - MTC LTR MaLR 0 421 1 4 1548 726 226 150 36 chr3 126291700 126291893 -33307890 - B3 SINE B2 -1 215 1 4 1548 455 206 140 0 chr3 126292226 126292333 -33307450 + B1_Mur1 SINE Alu 28 149 0 4 1548 354 169 0 0 chr3 126293164 126293229 -33306554 + A-rich Low_complexity Low_complexity 1 65 0 4 1548 871 224 16 16 chr3 126293324 126293506 -33306277 + B3 SINE B2 3 184 -32 4 1548 363 256 0 53 chr3 126293724 126293819 -33305964 + RLTR18 LTR ERVK 1 90 -526 4 1548 239 38 56 37 chr3 126293835 126293889 -33305894 + (CAAA)n Simple_repeat Simple_repeat 3 57 0 4 1548 819 297 87 71 chr3 126293892 126294400 -33305383 + RLTR18 LTR ERVK 101 616 0 4 1548 198 128 0 0 chr3 126294400 126294439 -33305344 + (A)n Simple_repeat Simple_repeat 1 39 0 4 1548 445 291 150 3 chr3 126294440 126294807 -33304976 + L1M2 LINE L1 2176 2615 -3967 4 1548 1419 226 96 10 chr3 126294863 126295176 -33304607 - MTD LTR MaLR -77 342 3 4 1548 1597 312 96 36 chr3 126295176 126295977 -33303806 + Lx8 LINE L1 6625 7473 0 4 1548 1349 279 52 19 chr3 126296092 126296553 -33303230 + RMER5 LTR ERV1 51 526 -8 4 1548 266 278 124 59 chr3 126296705 126296858 -33302925 + MER31B LTR ERV1 290 452 -14 4 1548 1606 57 5 15 chr3 126296858 126297053 -33302730 - B2_Mm2 SINE B2 -1 194 2 4 1548 645 222 34 14 chr3 126297953 126298099 -33301684 + B1_Mur1 SINE Alu 1 149 0 4 1548 198 0 0 0 chr3 126301298 126301320 -33298463 + (TG)n Simple_repeat Simple_repeat 1 22 0 4 1548 345 100 0 0 chr3 126302767 126302817 -33296966 + (ATG)n Simple_repeat Simple_repeat 2 51 0 4 1548 22 56 0 0 chr3 126303798 126303834 -33295949 + AT_rich Low_complexity Low_complexity 1 36 0 4 1548 240 253 25 74 chr3 126303864 126303945 -33295838 - B3A SINE B2 -121 77 1 4 1548 431 292 67 40 chr3 126303985 126304209 -33295574 + MIRc SINE MIR 30 256 -6 4 1548 213 319 58 45 chr3 126304299 126304438 -33295345 + MIRm SINE MIR 35 176 -100 4 1548 780 244 73 24 chr3 126304836 126305042 -33294741 + B3 SINE B2 1 216 0 4 1548 28 29 0 0 chr3 126305125 126305160 -33294623 + AT_rich Low_complexity Low_complexity 1 35 0 4 1548 1236 117 19 118 chr3 126305160 126305431 -33294352 - Lx4A LINE L1 -1 7057 6814 4 1548 311 278 0 40 chr3 126305669 126305744 -33294039 - ID4_ SINE ID -10 73 2 4 1548 540 195 10 8 chr3 126307116 126307243 -33292540 - B3 SINE B2 -70 123 1 4 1548 1231 266 78 35 chr3 126307266 126307424 -33292359 - Lx7 LINE L1 -16 7680 7442 4 1548 444 19 0 0 chr3 126307424 126307477 -33292306 + (CA)n Simple_repeat Simple_repeat 1 53 0 4 1548 1231 259 80 30 chr3 126307477 126307886 -33291897 - Lx7 LINE L1 -255 7441 7035 4 1548 736 259 0 6 chr3 126308103 126308274 -33291509 + Lx7 LINE L1 7085 7254 -442 4 1548 25 65 0 0 chr3 126308392 126308438 -33291345 + AT_rich Low_complexity Low_complexity 1 46 0 4 1548 288 0 0 0 chr3 126308438 126308470 -33291313 + (TG)n Simple_repeat Simple_repeat 1 32 0 4 1548 510 17 0 0 chr3 126308470 126308528 -33291255 + (GA)n Simple_repeat Simple_repeat 1 59 0 4 1548 421 248 76 42 chr3 126308547 126308665 -33291118 - RSINE1 SINE B4 -33 132 11 4 1548 210 158 0 0 chr3 126309415 126309453 -33290330 + T-rich Low_complexity Low_complexity 3 40 0 4 1548 259 291 202 17 chr3 126309469 126309588 -33290195 - B1F1 SINE Alu -8 141 1 4 1548 227 272 11 69 chr3 126309598 126309685 -33290098 - ID4_ SINE ID 0 83 2 4 1548 630 225 129 31 chr3 126310044 126310227 -33289556 + ID_B1 SINE B4 42 246 -46 4 1548 470 32 32 0 chr3 126310227 126310290 -33289493 + (GGAAA)n Simple_repeat Simple_repeat 5 69 0 4 1548 189 0 0 0 chr3 126310775 126310796 -33288987 + (TTTG)n Simple_repeat Simple_repeat 4 24 0 4 1548 361 336 7 63 chr3 126311380 126311523 -33288260 + RSINE1 SINE B4 3 137 -28 4 1548 299 169 14 0 chr3 126311527 126311598 -33288185 + (CAA)n Simple_repeat Simple_repeat 3 74 0 4 1548 516 268 92 0 chr3 126311767 126311909 -33287874 + B3A SINE B2 2 156 -42 4 1548 454 31 31 0 chr3 126311911 126311975 -33287808 + (CA)n Simple_repeat Simple_repeat 1 66 0 4 1548 782 182 95 90 chr3 126312491 126312702 -33287081 - URR1B DNA MER1_type -13 212 1 4 1548 33 25 0 0 chr3 126313755 126313795 -33285988 + AT_rich Low_complexity Low_complexity 1 40 0 4 1548 283 280 224 15 chr3 126313795 126313929 -33285854 - RSINE1 SINE B4 -2 163 2 4 1548 237 33 0 0 chr3 126314792 126314822 -33284961 + (GGAA)n Simple_repeat Simple_repeat 1 30 0 4 1548 370 345 63 24 chr3 126315691 126315896 -33283887 - Lx6 LINE L1 -59 7401 7189 4 1548 631 232 70 0 chr3 126317629 126317771 -33282012 + MTD LTR MaLR 2 153 -266 4 1548 270 136 0 0 chr3 126318059 126318103 -33281680 + (T)n Simple_repeat Simple_repeat 1 44 0 4 1548 28 71 0 0 chr3 126318836 126318892 -33280891 + AT_rich Low_complexity Low_complexity 1 56 0 4 1548 181 296 36 18 chr3 126319089 126319144 -33280639 - L3 LINE CR1 -3520 969 914 4 1548 2004 98 30 136 chr3 126319468 126319835 -33279948 - ORR1A4 LTR MaLR -1 328 1 4 1548 257 306 134 29 chr3 126320257 126320496 -33279287 - L1M4 LINE L1 -281 5897 5634 4 1548 189 0 0 0 chr3 126320496 126320517 -33279266 + (GGGTG)n Simple_repeat Simple_repeat 3 23 0 4 1548 395 325 41 8 chr3 126320530 126320543 -33279240 + B4 SINE B4 73 89 -203 4 1548 586 271 0 0 chr3 126320543 126320661 -33279122 + B1F2 SINE Alu 1 118 -31 4 1548 414 0 0 0 chr3 126321900 126321946 -33277837 + (CA)n Simple_repeat Simple_repeat 2 47 0 4 1548 1333 240 86 0 chr3 126321956 126322294 -33277489 - ORR1D2 LTR MaLR 0 370 4 4 1548 1471 236 130 3 chr3 126322438 126322808 -33276975 - MTD LTR MaLR -2 417 1 4 1548 3290 246 120 69 chr3 126322808 126324005 -33275778 - MTD-int LTR MaLR 0 1258 1 4 1548 1690 192 105 19 chr3 126324009 126324381 -33275402 - MTD LTR MaLR -8 411 8 4 1548 189 107 0 0 chr3 126325055 126325083 -33274700 + (TG)n Simple_repeat Simple_repeat 1 28 0 4 1548 965 246 86 76 chr3 126325321 126325740 -33274043 - RLTR23 LTR ERV1 0 430 8 4 1548 375 41 0 0 chr3 126326011 126326060 -33273723 + (TG)n Simple_repeat Simple_repeat 1 49 0 4 1548 307 248 61 87 chr3 126326081 126326098 -33273685 - L1MB3 LINE L1 -30 6153 6139 4 1548 1268 48 0 0 chr3 126326098 126326243 -33273540 + B1_Mm SINE Alu 1 145 -2 4 1548 252 0 0 0 chr3 126326243 126326271 -33273512 + (CAAT)n Simple_repeat Simple_repeat 2 29 0 4 1548 307 248 61 87 chr3 126326271 126326367 -33273416 - L1MB3 LINE L1 -45 6138 6043 4 1548 1018 314 60 9 chr3 126331230 126331561 -33268222 - MLT1A0 LTR MaLR -12 353 6 4 1548 758 174 0 75 chr3 126331903 126332064 -33267719 + B1_Mur2 SINE Alu 1 149 0 4 1548 465 271 54 63 chr3 126332705 126332926 -33266857 - L1ME2 LINE L1 -1 6163 5945 4 1548 396 311 109 18 chr3 126333130 126333415 -33266368 - L1ME2 LINE L1 -495 5669 5359 4 1548 324 0 0 0 chr3 126333415 126333451 -33266332 + (TG)n Simple_repeat Simple_repeat 2 37 0 4 1548 371 386 44 14 chr3 126333563 126333857 -33265926 - L1ME2 LINE L1 -937 5209 4907 4 1548 1113 180 19 5 chr3 126336273 126336485 -33263298 - URR1A DNA MER1_type -2 224 10 4 1548 224 328 136 0 chr3 126336933 126337058 -33262725 - L2 LINE L2 -676 2743 2602 4 1548 428 77 15 0 chr3 126337346 126337411 -33262372 + (GA)n Simple_repeat Simple_repeat 2 67 0 4 1548 256 169 15 44 chr3 126337529 126337597 -33262186 - L1MA10 LINE L1 0 6334 6269 4 1548 1092 116 0 0 chr3 126337759 126337905 -33261878 + B1_Mus1 SINE Alu 2 147 -1 5 1548 462 36 0 0 chr3 126337908 126337964 -33261819 + (CA)n Simple_repeat Simple_repeat 2 57 0 5 1548 459 0 0 0 chr3 126338557 126338608 -33261175 + (TA)n Simple_repeat Simple_repeat 2 52 0 5 1548 875 245 39 35 chr3 126338608 126338811 -33260972 - ID_B1 SINE B4 -20 204 1 5 1548 234 254 0 16 chr3 126339537 126339601 -33260182 - Lx8 LINE L1 -8 7465 7403 5 1548 1734 70 0 1 chr3 126339684 126339917 -33259866 + L1Md_F2 LINE L1 5384 5615 -2170 5 1548 8467 53 0 15 chr3 126339917 126340928 -33258855 + L1Md_F2 LINE L1 5587 6582 0 5 1548 333 0 0 0 chr3 126341482 126341519 -33258264 + (TG)n Simple_repeat Simple_repeat 2 38 0 5 1548 220 353 82 30 chr3 126342992 126343223 -33256560 - L3b LINE CR1 -221 261 19 5 1548 180 125 0 0 chr3 126344185 126344217 -33255566 + (TG)n Simple_repeat Simple_repeat 1 32 0 5 1548 446 293 43 0 chr3 126344225 126344341 -33255442 - RSINE1 SINE B4 -41 124 4 5 1548 751 282 22 62 chr3 126344494 126344766 -33255017 - MTEa LTR MaLR 0 379 119 5 1548 1310 155 14 14 chr3 126344824 126345033 -33254750 - 7SLRNA srpRNA srpRNA -83 231 23 5 1548 2523 98 3 0 chr3 126345183 126345508 -33254275 + Lx3A LINE L1 6650 6975 -6 5 1548 613 283 68 81 chr3 126345739 126346062 -33253721 + MER33 DNA MER1_type 6 324 0 5 1548 189 196 0 0 chr3 126346886 126346937 -33252846 + CT-rich Low_complexity Low_complexity 2 52 0 5 1548 25 0 0 0 chr3 126347427 126347452 -33252331 + AT_rich Low_complexity Low_complexity 1 25 0 5 1548 383 198 22 34 chr3 126347595 126347684 -33252099 + B1_Mus2 SINE Alu 60 147 0 5 1548 580 316 105 55 chr3 126347861 126348336 -33251447 - L1ME1 LINE L1 -2 6177 5679 5 1548 652 205 8 0 chr3 126348405 126348532 -33251251 - B1_Mur2 SINE Alu -5 144 17 5 1548 24 32 0 0 chr3 126348954 126348985 -33250798 + AT_rich Low_complexity Low_complexity 1 31 0 5 1548 5537 83 29 4 chr3 126349066 126349782 -33250001 - Lx3A LINE L1 -1 6980 6247 5 1548 218 309 59 0 chr3 126351780 126351848 -33247935 - ID4 SINE ID -9 74 3 5 1548 704 196 54 7 chr3 126352030 126352117 -33247666 - RLTR20C LTR ERVK 0 578 490 5 1548 243 0 0 0 chr3 126352117 126352144 -33247639 + (CA)n Simple_repeat Simple_repeat 2 28 0 5 1548 704 196 54 7 chr3 126352144 126352205 -33247578 - RLTR20C LTR ERVK -89 489 424 5 1548 962 202 157 66 chr3 126352203 126352489 -33247294 - RLTR20C LTR ERVK -222 312 1 5 1548 351 367 51 21 chr3 126352532 126352561 -33247222 - L2a LINE L2 -197 3229 3201 5 1548 606 28 0 0 chr3 126352561 126352633 -33247150 + (TG)n Simple_repeat Simple_repeat 2 73 0 5 1548 351 367 51 21 chr3 126352633 126352837 -33246946 - L2a LINE L2 -226 3200 2989 5 1549 375 23 0 0 chr3 126354159 126354203 -33245580 + (TG)n Simple_repeat Simple_repeat 1 44 0 5 1549 298 325 94 50 chr3 126354267 126354467 -33245316 - B4A SINE B4 -81 211 1 5 1549 769 199 57 0 chr3 126355644 126355785 -33243998 - B1_Mur4 SINE Alu 0 150 2 5 1549 243 0 0 0 chr3 126355853 126355880 -33243903 + (TG)n Simple_repeat Simple_repeat 1 27 0 5 1549 348 290 27 36 chr3 126356981 126357092 -33242691 - L2a LINE L2 -21 3405 3296 5 1549 2926 92 17 22 chr3 126358466 126358878 -33240905 + Lx2 LINE L1 6587 6996 -1 5 1549 189 147 0 0 chr3 126359037 126359071 -33240712 + (C)n Simple_repeat Simple_repeat 1 34 0 5 1549 375 23 0 0 chr3 126359980 126360024 -33239759 + (TG)n Simple_repeat Simple_repeat 1 44 0 5 1549 211 320 108 31 chr3 126360279 126360408 -33239375 + B1_Mus1 SINE Alu 10 148 0 5 1549 618 134 30 62 chr3 126360415 126360706 -33239077 + GA-rich Low_complexity Low_complexity 1 281 0 5 1549 437 189 143 31 chr3 126360978 126361076 -33238707 - PB1D10 SINE Alu -8 109 1 5 1549 450 0 0 0 chr3 126362701 126362751 -33237032 + (TG)n Simple_repeat Simple_repeat 1 50 0 5 1549 255 61 0 0 chr3 126364766 126364799 -33234984 + (TG)n Simple_repeat Simple_repeat 1 33 0 5 1549 763 199 6 76 chr3 126365315 126365473 -33234310 - B1_Mur1 SINE Alu 0 149 3 5 1549 25 31 0 0 chr3 126365576 126365608 -33234175 + AT_rich Low_complexity Low_complexity 1 32 0 5 1549 185 86 57 0 chr3 126365691 126365726 -33234057 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 5 1549 218 304 0 37 chr3 126366290 126366372 -33233411 + MIR3 SINE MIR 92 170 -38 5 1549 186 304 0 55 chr3 126366574 126366647 -33233136 + L2 LINE L2 2836 2904 -515 5 1549 328 277 184 5 chr3 126367870 126368055 -33231728 + L1ME3A LINE L1 5920 6137 -36 5 1549 207 0 0 0 chr3 126368117 126368140 -33231643 + (TC)n Simple_repeat Simple_repeat 2 24 0 5 1549 714 43 0 0 chr3 126368140 126368233 -33231550 + (TG)n Simple_repeat Simple_repeat 1 94 0 5 1549 456 248 20 10 chr3 126368270 126368372 -33231411 - PB1D10 SINE Alu -2 115 13 5 1549 468 210 39 39 chr3 126368928 126369032 -33230751 - PB1D10 SINE Alu 0 120 17 5 1549 245 188 0 80 chr3 126369232 126369307 -33230476 - Lx9 LINE L1 -75 7569 7501 5 1549 272 326 23 0 chr3 126369367 126369453 -33230330 - Lx9 LINE L1 -324 7320 7233 5 1549 305 235 0 56 chr3 126369914 126369986 -33229797 + RMER30 DNA MER1_type 10 77 -125 5 1549 304 138 31 0 chr3 126370012 126370077 -33229706 + (CA)n Simple_repeat Simple_repeat 1 67 0 5 1549 315 164 0 0 chr3 126370166 126370227 -33229556 + (CA)n Simple_repeat Simple_repeat 2 62 0 5 1549 222 224 29 29 chr3 126370414 126370483 -33229300 - L2 LINE L2 -2523 896 828 5 1549 279 0 0 0 chr3 126372761 126372792 -33226991 + (TC)n Simple_repeat Simple_repeat 2 32 0 5 1549 393 22 0 0 chr3 126372792 126372837 -33226946 + (TG)n Simple_repeat Simple_repeat 1 46 0 5 1549 220 200 0 0 chr3 126372839 126372884 -33226899 + GA-rich Low_complexity Low_complexity 2 46 0 5 1549 406 306 8 24 chr3 126373122 126373249 -33226534 - MTE2b LTR MaLR -249 130 6 5 1549 21 0 0 0 chr3 126373767 126373788 -33225995 + AT_rich Low_complexity Low_complexity 1 21 0 5 1549 474 207 43 35 chr3 126373828 126373943 -33225840 - ID_B1 SINE B4 -1 223 108 5 1549 389 210 125 31 chr3 126373943 126373956 -33225827 - B1F SINE Alu 0 149 10 5 1549 495 339 118 33 chr3 126374107 126374437 -33225346 - Arthur1 DNA Tip100 -3559 388 31 5 1549 243 203 16 0 chr3 126375945 126376009 -33223774 + (CATATA)n Simple_repeat Simple_repeat 4 68 0 5 1549 3013 55 5 5 chr3 126376115 126376501 -33223282 - MTA_Mm LTR MaLR 0 396 11 5 1549 229 263 87 63 chr3 126376645 126376680 -33223103 + MT2B LTR ERVL 128 256 -345 5 1549 386 233 143 11 chr3 126376680 126376771 -33223012 + B1F1 SINE Alu 1 103 -46 5 1549 10430 56 68 1 chr3 126376863 126378225 -33221558 - L1Md_F2 LINE L1 -369 5514 4063 5 1549 620 67 0 0 chr3 126378220 126378295 -33221488 + L1Md_F2 LINE L1 5512 5586 -297 5 1549 8313 55 3 6 chr3 126378295 126379295 -33220488 + L1Md_F2 LINE L1 5587 6582 0 5 1549 570 254 108 17 chr3 126379948 126380180 -33219603 - L1MA5 LINE L1 0 6300 6048 5 1549 933 211 244 29 chr3 126381386 126381911 -33217872 - Lx9 LINE L1 0 7644 7007 5 1549 22 0 0 0 chr3 126382913 126382935 -33216848 + AT_rich Low_complexity Low_complexity 1 22 0 5 1549 976 132 0 14 chr3 126383086 126383224 -33216559 - B1_Mur4 SINE Alu -11 139 4 5 1549 278 26 26 0 chr3 126383279 126383318 -33216465 + (TTTTG)n Simple_repeat Simple_repeat 3 42 0 5 1549 799 282 33 5 chr3 126383537 126383747 -33216036 + ID_B1 SINE B4 7 222 -2 5 1549 251 250 107 86 chr3 126384458 126384598 -33215185 + MLT1E LTR MaLR 371 513 -140 5 1549 340 310 37 52 chr3 126385109 126385245 -33214538 - RLTR16 LTR ERVK -213 292 159 5 1549 201 47 22 44 chr3 126385250 126385295 -33214488 + (CAAAAA)n Simple_repeat Simple_repeat 2 45 0 5 1549 493 269 15 7 chr3 126385295 126385430 -33214353 - RLTR16 LTR ERVK -346 159 24 5 1549 673 318 34 48 chr3 126385446 126385714 -33214069 - MLT1B LTR MaLR -122 268 5 5 1549 326 282 8 149 chr3 126385745 126385866 -33213917 + B1F2 SINE Alu 9 112 -37 5 1549 391 288 66 99 chr3 126386421 126386633 -33213150 + Charlie1a DNA MER1_type 4 208 -1247 5 1549 257 244 223 43 chr3 126387142 126387236 -33212547 + PB1D7 SINE Alu 4 114 -6 5 1549 198 77 0 88 chr3 126388137 126388194 -33211589 + A-rich Low_complexity Low_complexity 3 54 0 5 1549 232 0 104 0 chr3 126388584 126388632 -33211151 + (GGGA)n Simple_repeat Simple_repeat 3 55 0 5 1549 499 174 121 10 chr3 126388902 126389001 -33210782 + PB1D9 SINE Alu 8 117 -3 5 1549 297 0 0 0 chr3 126389004 126389037 -33210746 + (TGAA)n Simple_repeat Simple_repeat 3 35 0 5 1549 681 47 0 0 chr3 126389282 126389367 -33210416 + (TTTC)n Simple_repeat Simple_repeat 2 86 0 5 1549 291 271 115 0 chr3 126389383 126389479 -33210304 - B1_Mus1 SINE Alu -31 117 11 5 1549 249 247 49 0 chr3 126390017 126390098 -33209685 - MER67B LTR ERV1 -3 658 574 5 1549 268 258 8 8 chr3 126391180 126391305 -33208478 + CT-rich Low_complexity Low_complexity 3 127 0 5 1549 461 229 10 10 chr3 126391570 126391667 -33208116 + PB1D10 SINE Alu 1 97 -20 5 1549 228 130 0 0 chr3 126391698 126391744 -33208039 + (A)n Simple_repeat Simple_repeat 1 46 0 5 1549 21 0 0 0 chr3 126392540 126392561 -33207222 + AT_rich Low_complexity Low_complexity 1 21 0 5 1549 267 31 0 0 chr3 126393890 126393922 -33205861 + (CA)n Simple_repeat Simple_repeat 2 33 0 5 1549 283 151 56 12 chr3 126394836 126394997 -33204786 + (TA)n Simple_repeat Simple_repeat 2 169 0 5 1549 234 320 48 0 chr3 126395544 126395647 -33204136 + L2a LINE L2 3256 3363 -63 5 1549 318 305 58 17 chr3 126396570 126396690 -33203093 - MER58B DNA MER1_type -101 240 116 5 1549 641 243 168 0 chr3 126396691 126396876 -33202907 + B3 SINE B2 1 216 0 5 1549 22 0 0 0 chr3 126396883 126396905 -33202878 + AT_rich Low_complexity Low_complexity 1 22 0 5 1549 501 244 42 49 chr3 126397460 126397602 -33202181 - B1_Mur1 SINE Alu -7 142 2 5 1549 377 151 0 11 chr3 126398196 126398283 -33201500 + GA-rich Low_complexity Low_complexity 2 87 0 5 1549 21 71 0 0 chr3 126399217 126399259 -33200524 + AT_rich Low_complexity Low_complexity 1 42 0 6 1549 272 386 20 10 chr3 126399527 126399629 -33200154 - MIRb SINE MIR -139 129 27 6 1549 285 155 0 0 chr3 126400485 126400543 -33199240 + T-rich Low_complexity Low_complexity 1 58 0 6 1549 1168 62 0 7 chr3 126400544 126400691 -33199092 - B1_Mus1 SINE Alu -1 147 2 6 1549 219 188 0 0 chr3 126402423 126402471 -33197312 + G-rich Low_complexity Low_complexity 3 50 0 6 1549 285 145 0 0 chr3 126403018 126403080 -33196703 + (TC)n Simple_repeat Simple_repeat 1 62 0 6 1549 1223 55 0 0 chr3 126403122 126403268 -33196515 + B1_Mm SINE Alu 2 147 0 6 1549 509 232 0 20 chr3 126403283 126403384 -33196399 - PB1D9 SINE Alu -13 107 9 6 1549 268 344 20 61 chr3 126403308 126403407 -33196376 - B4A SINE B4 -129 163 69 6 1549 359 266 176 79 chr3 126403859 126404177 -33195606 + MLT1A0 LTR MaLR 11 359 -6 6 1549 245 334 189 38 chr3 126404224 126404647 -33195136 - L2 LINE L2 -623 2796 2310 6 1549 270 116 0 0 chr3 126405309 126405352 -33194431 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 6 1549 727 257 21 27 chr3 126406656 126406844 -33192939 + B3 SINE B2 27 213 -3 6 1549 22 35 0 0 chr3 126406871 126406900 -33192883 + AT_rich Low_complexity Low_complexity 1 29 0 6 1549 183 129 0 0 chr3 126406923 126406954 -33192829 + (CATG)n Simple_repeat Simple_repeat 4 34 0 6 1549 445 248 177 0 chr3 126406962 126407075 -33192708 - RSINE1 SINE B4 -10 155 23 6 1549 490 29 29 0 chr3 126407084 126407152 -33192631 + (TATG)n Simple_repeat Simple_repeat 4 73 0 6 1549 1380 227 100 27 chr3 126407153 126407524 -33192259 + MTD LTR MaLR 22 419 0 6 1549 21 0 0 0 chr3 126407551 126407572 -33192211 + AT_rich Low_complexity Low_complexity 1 21 0 6 1549 192 135 0 0 chr3 126408135 126408172 -33191611 + (T)n Simple_repeat Simple_repeat 1 37 0 6 1549 414 57 0 0 chr3 126408968 126409021 -33190762 + (TG)n Simple_repeat Simple_repeat 1 53 0 6 1549 847 312 59 8 chr3 126409178 126409433 -33190350 + B4 SINE B4 5 272 -20 6 1549 1239 47 0 0 chr3 126409679 126409827 -33189956 - B1_Mus1 SINE Alu 0 148 1 6 1549 579 15 0 0 chr3 126410935 126411003 -33188780 + (TC)n Simple_repeat Simple_repeat 1 68 0 6 1549 912 260 75 8 chr3 126412475 126412693 -33187090 - MER82 DNA MER2_type -329 324 98 6 1549 455 0 18 0 chr3 126412693 126412748 -33187035 + (TG)n Simple_repeat Simple_repeat 2 57 0 6 1549 912 260 75 8 chr3 126412748 126412796 -33186987 - MER82 DNA MER2_type -556 97 41 6 1549 276 30 0 0 chr3 126414176 126414209 -33185574 + (TA)n Simple_repeat Simple_repeat 2 34 0 6 1549 267 197 29 29 chr3 126414276 126414344 -33185439 + RLTR19C LTR ERVK 30 97 -409 6 1549 569 115 10 0 chr3 126415300 126415396 -33184387 + (TTTC)n Simple_repeat Simple_repeat 4 100 0 6 1549 690 245 14 0 chr3 126415396 126415535 -33184248 - B1_Mur1 SINE Alu 0 149 9 6 1549 1216 240 112 0 chr3 126415788 126416075 -33183708 + MTD LTR MaLR 36 354 -65 6 1549 370 298 52 22 chr3 126416592 126416726 -33183057 - MER58C DNA MER1_type -35 180 43 6 1549 922 154 0 98 chr3 126416825 126417019 -33182764 + URR1A DNA MER1_type 52 226 0 6 1549 38 22 0 0 chr3 126417111 126417156 -33182627 + AT_rich Low_complexity Low_complexity 1 45 0 6 1549 211 286 0 0 chr3 126418432 126418481 -33181302 - PB1D9 SINE Alu -69 51 3 6 1549 1396 65 43 0 chr3 126418961 126419147 -33180636 - B2_Mm2 SINE B2 -1 194 1 6 1549 544 268 77 80 chr3 126419195 126419272 -33180511 - ORR1E LTR MaLR -3 356 270 6 1549 1194 156 60 14 chr3 126419272 126419487 -33180296 + URR1B DNA MER1_type 1 225 0 6 1549 544 268 77 80 chr3 126419487 126419758 -33180025 - ORR1E LTR MaLR -90 269 9 6 1549 306 174 56 84 chr3 126419777 126419884 -33179899 - MLT1A1 LTR MaLR -3 405 302 6 1549 279 0 0 0 chr3 126421498 126421529 -33178254 + (TG)n Simple_repeat Simple_repeat 1 31 0 6 1549 2103 171 51 15 chr3 126421529 126421912 -33177871 + MTC LTR MaLR 22 421 0 6 1549 528 315 75 107 chr3 126422183 126422246 -33177537 - B4 SINE B4 0 292 238 6 1549 1184 28 7 14 chr3 126422246 126422393 -33177390 - B1_Mm SINE Alu -1 146 1 6 1549 528 315 75 107 chr3 126422393 126422610 -33177173 - B4 SINE B4 -55 237 21 6 1549 1335 72 0 0 chr3 126423236 126423416 -33176367 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 6 1549 507 157 0 0 chr3 126423478 126423567 -33176216 + (TG)n Simple_repeat Simple_repeat 2 90 0 6 1549 653 206 0 32 chr3 126423614 126423800 -33175983 + (TA)n Simple_repeat Simple_repeat 1 180 0 6 1549 551 224 5 38 chr3 126423780 126423966 -33175817 + (TATG)n Simple_repeat Simple_repeat 1 180 0 6 1549 338 260 78 0 chr3 126424278 126424355 -33175428 - RLTR18 LTR ERVK 0 616 534 6 1549 931 36 0 0 chr3 126424355 126424467 -33175316 - L1_Mus1 LINE L1 -142 6425 6314 6 1549 728 105 16 0 chr3 126424467 126424591 -33175192 + L1_Mus1 LINE L1 6441 6566 -1 6 1549 2614 146 75 81 chr3 126424602 126425160 -33174623 - RLTR18 LTR ERVK -61 555 1 6 1549 24 32 0 0 chr3 126425343 126425374 -33174409 + AT_rich Low_complexity Low_complexity 1 31 0 6 1549 272 258 0 29 chr3 126425614 126425682 -33174101 + B1F SINE Alu 84 149 0 6 1549 876 301 136 9 chr3 126426449 126426868 -33172915 - MLT1H2 LTR MaLR -5 484 13 6 1549 22 35 0 0 chr3 126426940 126426969 -33172814 + AT_rich Low_complexity Low_complexity 1 29 0 6 1549 229 311 0 0 chr3 126427162 126427236 -33172547 - tRNA-Ala-GCG tRNA tRNA 0 75 2 6 1549 412 304 18 6 chr3 126427709 126427878 -33171905 + (CATA)n Simple_repeat Simple_repeat 4 174 0 6 1549 22 88 0 0 chr3 126428162 126428219 -33171564 + AT_rich Low_complexity Low_complexity 1 57 0 6 1549 696 179 138 26 chr3 126429149 126429338 -33170445 + Lx5 LINE L1 6838 7047 -3 6 1549 1451 203 156 16 chr3 126430828 126431194 -33168589 - MTD LTR MaLR 0 419 3 6 1549 1323 170 5 0 chr3 126431734 126431958 -33167825 + URR1B DNA MER1_type 1 225 0 6 1549 196 358 62 0 chr3 126432124 126432205 -33167578 - MIRb SINE MIR -159 109 24 6 1549 379 347 39 39 chr3 126432857 126433091 -33166692 + L1M5 LINE L1 5568 5801 -323 6 1549 1713 247 111 66 chr3 126434796 126435781 -33164002 - RMER1B Other Other -42 1024 1 6 1549 1344 205 99 20 chr3 126435751 126436095 -33163688 - RMER1B Other Other -651 415 45 6 1549 699 291 55 18 chr3 126436606 126436949 -33162834 + Lx9 LINE L1 7262 7617 -27 6 1549 517 316 131 70 chr3 126437940 126438481 -33161302 - L1MCa LINE L1 -5284 1224 651 6 1549 329 335 18 6 chr3 126438558 126438726 -33161057 - L1MCa LINE L1 -5977 531 362 6 1549 439 367 88 11 chr3 126439085 126439369 -33160414 - L1MCa LINE L1 -6144 364 59 6 1549 317 325 0 100 chr3 126440384 126440514 -33159269 - L2c LINE L2 0 3387 3271 6 1549 703 186 97 25 chr3 126440968 126441205 -33158578 - Lx7 LINE L1 0 7696 7443 6 1549 279 0 0 0 chr3 126441986 126442017 -33157766 + (TG)n Simple_repeat Simple_repeat 1 31 0 6 1549 243 0 0 0 chr3 126442017 126442043 -33157740 + (GA)n Simple_repeat Simple_repeat 1 27 0 6 1549 288 258 0 31 chr3 126442528 126442592 -33157191 + ID4 SINE ID 9 70 -13 6 1549 453 90 0 0 chr3 126442592 126442659 -33157124 + (CA)n Simple_repeat Simple_repeat 1 67 0 6 1549 2600 106 48 21 chr3 126443502 126443937 -33155846 + Lx4A LINE L1 6520 6966 -92 6 1549 195 129 0 0 chr3 126443990 126444021 -33155762 + (A)n Simple_repeat Simple_repeat 1 31 0 6 1549 1006 129 42 16 chr3 126444361 126444550 -33155233 - B2_Mm2 SINE B2 -1 194 1 6 1549 336 197 0 13 chr3 126445471 126445548 -33154235 - Lx7 LINE L1 -5 7691 7616 6 1549 251 308 218 32 chr3 126445622 126445810 -33153973 - MLT1K LTR MaLR -372 223 1 6 1549 1235 41 0 0 chr3 126446166 126446313 -33153470 + B1_Mus2 SINE Alu 1 147 0 6 1549 499 340 0 13 chr3 126446349 126446507 -33153276 - RSINE1 SINE B4 -6 159 4 6 1549 1775 180 15 77 chr3 126446550 126446953 -33152830 - ORR1C1 LTR MaLR 0 378 1 6 1549 1262 58 6 0 chr3 126449875 126450047 -33149736 + (TTTC)n Simple_repeat Simple_repeat 2 174 0 6 1549 838 47 0 0 chr3 126450061 126450167 -33149616 - B1_Mm SINE Alu 0 147 42 6 1549 543 258 14 77 chr3 126450228 126450371 -33149412 - RSINE1 SINE B4 -29 136 3 6 1549 1334 289 48 6 chr3 126451258 126451613 -33148170 - ORR1D2 LTR MaLR 0 370 1 6 1549 26 0 0 0 chr3 126451857 126451883 -33147900 + AT_rich Low_complexity Low_complexity 1 26 0 6 1549 577 242 0 16 chr3 126451939 126452065 -33147718 - RSINE1 SINE B4 -36 129 6 6 1549 21 36 0 0 chr3 126452368 126452396 -33147387 + AT_rich Low_complexity Low_complexity 1 28 0 6 1549 515 43 14 0 chr3 126452871 126452941 -33146842 + (TG)n Simple_repeat Simple_repeat 1 71 0 6 1549 195 285 140 44 chr3 126453294 126453430 -33146353 - L3 LINE CR1 -218 4271 4123 6 1549 744 216 50 7 chr3 126453791 126453978 -33145805 - B3 SINE B2 -1 197 10 6 1549 1188 92 0 33 chr3 126454133 126454313 -33145470 - L1_Mus1 LINE L1 0 6567 6394 6 1549 232 371 44 22 chr3 126454488 126454623 -33145160 - L2b LINE L2 -5 3370 3233 6 1549 356 233 58 0 chr3 126455418 126455504 -33144279 - L1_Mur3 LINE L1 -693 5187 5097 6 1549 538 306 29 39 chr3 126456560 126456767 -33143016 + B4A SINE B4 80 284 -8 6 1549 4699 36 11 0 chr3 126457001 126457560 -33142223 - L1Md_T LINE L1 -1 6581 6017 6 1549 180 0 0 0 chr3 126457909 126457929 -33141854 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 6 1549 815 272 16 98 chr3 126459489 126459501 -33140282 - B4A SINE B4 0 292 281 6 1549 1041 106 0 0 chr3 126459501 126459681 -33140102 + (TG)n Simple_repeat Simple_repeat 1 180 0 6 1549 815 272 16 98 chr3 126459681 126459986 -33139797 - B4A SINE B4 -12 280 1 6 1549 237 297 13 13 chr3 126460596 126460671 -33139112 - B4A SINE B4 -211 81 7 6 1549 685 266 21 0 chr3 126460852 126460995 -33138788 - RSINE1 SINE B4 -16 149 4 6 1549 797 231 14 46 chr3 126461311 126461529 -33138254 - Lx5 LINE L1 -74 6976 6766 6 1549 1171 289 85 25 chr3 126461864 126462496 -33137287 - L1MB3 LINE L1 -95 6088 5419 6 1549 277 250 40 0 chr3 126462587 126462663 -33137120 - ID4 SINE ID -2 81 3 7 1549 186 71 0 0 chr3 126462803 126462831 -33136952 + (TGAA)n Simple_repeat Simple_repeat 1 28 0 7 1549 696 258 22 22 chr3 126462855 126463037 -33136746 + B3A SINE B2 1 182 -16 7 1549 217 278 0 0 chr3 126463363 126463417 -33136366 + (CGTG)n Simple_repeat Simple_repeat 1 54 0 7 1549 257 254 0 31 chr3 126463446 126463511 -33136272 + B4A SINE B4 90 152 -140 7 1549 227 212 59 59 chr3 126463511 126463525 -33136258 + PB1D9 SINE Alu 22 85 -35 7 1549 464 318 58 23 chr3 126463812 126463986 -33135797 - B3A SINE B2 -16 182 3 7 1549 775 228 68 94 chr3 126464574 126464728 -33135055 - L1MA4 LINE L1 -377 5923 5781 7 1549 198 71 0 0 chr3 126464728 126464756 -33135027 + (TG)n Simple_repeat Simple_repeat 2 29 0 7 1549 775 228 68 94 chr3 126464756 126464984 -33134799 - L1MA4 LINE L1 -520 5780 5551 7 1549 2726 159 84 8 chr3 126465130 126465632 -33134151 + RLTR20A LTR ERVK 1 540 -1 7 1549 239 276 0 95 chr3 126465685 126465769 -33134014 - B4 SINE B4 -215 77 2 7 1549 651 282 171 60 chr3 126465833 126466820 -33132963 - L1MA4 LINE L1 -762 5381 4285 7 1549 276 372 37 50 chr3 126467499 126467717 -33132066 - MLT1A LTR MaLR -42 332 118 7 1549 792 249 23 51 chr3 126471826 126472042 -33127741 + B3 SINE B2 1 210 -6 7 1549 30 0 0 0 chr3 126472379 126472409 -33127374 + AT_rich Low_complexity Low_complexity 1 30 0 7 1549 190 0 67 0 chr3 126473581 126473611 -33126172 + (TTTTG)n Simple_repeat Simple_repeat 4 35 0 7 1549 21 0 0 0 chr3 126473620 126473641 -33126142 + AT_rich Low_complexity Low_complexity 1 21 0 7 1549 360 0 0 0 chr3 126475672 126475712 -33124071 + (TC)n Simple_repeat Simple_repeat 1 40 0 7 1549 300 27 0 0 chr3 126475712 126475748 -33124035 + (CA)n Simple_repeat Simple_repeat 1 37 0 7 1549 404 125 31 10 chr3 126477722 126477819 -33121964 + (TAGA)n Simple_repeat Simple_repeat 1 99 0 7 1549 23 0 0 0 chr3 126478600 126478623 -33121160 + AT_rich Low_complexity Low_complexity 1 23 0 7 1549 2069 169 13 5 chr3 126478734 126479109 -33120674 - ORR1C1 LTR MaLR 0 378 1 7 1549 750 279 51 46 chr3 126479139 126479376 -33120407 + B4A SINE B4 14 251 -41 7 1549 495 33 0 0 chr3 126479393 126479454 -33120329 + (CA)n Simple_repeat Simple_repeat 1 61 0 7 1549 225 0 0 0 chr3 126479559 126479584 -33120199 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 7 1549 192 97 0 0 chr3 126483093 126483124 -33116659 + (TCCCC)n Simple_repeat Simple_repeat 5 35 0 7 1549 422 143 13 0 chr3 126483187 126483264 -33116519 + CT-rich Low_complexity Low_complexity 2 79 0 7 1549 24 0 0 0 chr3 126483556 126483580 -33116203 + AT_rich Low_complexity Low_complexity 1 24 0 7 1549 288 0 0 0 chr3 126484168 126484200 -33115583 + (TG)n Simple_repeat Simple_repeat 2 33 0 7 193 402 328 1 19 chr3 126484437 126484559 -33115224 - PB1D10 SINE Alu -25 122 2 7 193 246 241 21 94 chr3 126484476 126484572 -33115211 - MT2B2 LTR ERVL -344 240 152 7 1550 213 163 0 23 chr3 126485237 126485281 -33114502 + A-rich Low_complexity Low_complexity 4 46 0 7 1550 183 42 0 0 chr3 126485356 126485380 -33114403 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 7 1550 2219 75 10 16 chr3 126485527 126485840 -33113943 - L1_Mus3 LINE L1 0 6638 6328 7 1550 465 19 0 0 chr3 126486634 126486688 -33113095 + (TG)n Simple_repeat Simple_repeat 1 54 0 7 1550 215 267 0 0 chr3 126486688 126486733 -33113050 + (CG)n Simple_repeat Simple_repeat 1 45 0 7 1550 599 313 72 57 chr3 126486997 126487346 -33112437 - MLT1A0 LTR MaLR 0 365 12 7 1550 195 312 75 0 chr3 126488253 126488333 -33111450 + MIRb SINE MIR 110 195 -73 7 1550 2069 161 8 3 chr3 126489995 126490351 -33109432 - RLTR15 LTR ERVK 0 359 2 7 1550 199 423 18 0 chr3 126491199 126491310 -33108473 + MER5A DNA MER1_type 3 115 -74 7 1550 542 286 91 12 chr3 126491310 126491633 -33108150 + L1MB2 LINE L1 5614 5964 -204 7 1550 4312 80 3 14 chr3 126492151 126492736 -33107047 - L1_Mus3 LINE L1 -4 6634 6056 7 1550 1527 111 0 0 chr3 126492736 126492970 -33106813 + L1_Mus3 LINE L1 5734 5967 -671 7 1550 446 312 91 69 chr3 126494137 126494512 -33105271 + L1MC5 LINE L1 6798 7180 -781 7 1550 445 279 44 18 chr3 126494598 126494711 -33105072 + MTE2b LTR MaLR 1 116 -263 7 1550 333 231 25 37 chr3 126494811 126494892 -33104891 + MTE2a LTR MaLR 40 119 -260 7 1550 194 289 115 0 chr3 126494945 126495049 -33104734 + MIR SINE MIR 95 210 -52 7 1550 696 304 120 4 chr3 126495373 126495631 -33104152 - RMER15 LTR ERVL -14 561 274 7 1550 410 258 8 55 chr3 126495645 126495772 -33104011 - RMER15 LTR ERVL -436 139 19 7 1550 21 0 0 0 chr3 126496362 126496383 -33103400 + AT_rich Low_complexity Low_complexity 1 21 0 7 1550 311 65 0 21 chr3 126496543 126496590 -33103193 + (GGA)n Simple_repeat Simple_repeat 1 46 0 7 1550 235 328 132 8 chr3 126497409 126497538 -33102245 + MER2 DNA MER2_type 25 169 -176 7 1550 312 263 0 38 chr3 126497577 126497656 -33102127 + MER2 DNA MER2_type 260 335 -10 7 1550 2569 244 130 9 chr3 126498562 126499241 -33100542 - MMAR1 DNA Mariner 0 1286 526 7 1550 432 51 0 0 chr3 126499515 126499574 -33100209 + (TG)n Simple_repeat Simple_repeat 2 60 0 7 1550 518 319 0 0 chr3 126499574 126499709 -33100074 - ID_B1 SINE B4 -9 215 81 7 1550 432 99 0 0 chr3 126501250 126501321 -33098462 + (TG)n Simple_repeat Simple_repeat 2 72 0 1 1550 744 194 23 0 chr3 126502051 126502180 -33097603 + B1_Mur1 SINE Alu 11 142 -7 2 1550 348 200 0 0 chr3 126502187 126502267 -33097516 + GA-rich Low_complexity Low_complexity 4 83 0 3 1550 183 42 0 0 chr3 126503043 126503067 -33096716 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 4 1550 273 149 0 0 chr3 126505753 126505820 -33093963 + (T)n Simple_repeat Simple_repeat 1 67 0 5 1550 2033 95 7 16 chr3 126507206 126507515 -33092268 + L1_Mus4 LINE L1 6326 6631 -5 6 1550 207 0 0 0 chr3 126508939 126508962 -33090821 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 7 1550 225 292 61 15 chr3 126509757 126509823 -33089960 + ID4 SINE ID 15 83 0 8 1550 329 103 18 0 chr3 126510113 126510175 -33089608 + B1_Mur4 SINE Alu 87 150 0 9 1550 195 42 0 0 chr3 126510583 126510607 -33089176 + (TTG)n Simple_repeat Simple_repeat 2 25 0 1 1550 231 36 0 0 chr3 126511359 126511387 -33088396 + (GA)n Simple_repeat Simple_repeat 1 28 0 1 1550 22 0 0 0 chr3 126513185 126513207 -33086576 + AT_rich Low_complexity Low_complexity 1 22 0 1 1550 22 35 0 0 chr3 126513879 126513908 -33085875 + AT_rich Low_complexity Low_complexity 1 29 0 1 1550 30 45 0 0 chr3 126514288 126514332 -33085451 + AT_rich Low_complexity Low_complexity 1 44 0 1 1550 249 57 0 0 chr3 126515017 126515052 -33084731 + (CAGA)n Simple_repeat Simple_repeat 2 36 0 1 1550 465 266 29 0 chr3 126515699 126515838 -33083945 + B1F1 SINE Alu 5 147 -2 1 1550 206 255 59 0 chr3 126517100 126517151 -33082632 - L2a LINE L2 -1 3425 3372 1 1550 266 83 0 59 chr3 126517352 126517403 -33082380 + (TTTTG)n Simple_repeat Simple_repeat 3 50 0 1 1550 315 301 9 17 chr3 126517419 126517534 -33082249 + PB1D10 SINE Alu 3 116 -1 1 1550 6467 56 0 6 chr3 126517988 126518833 -33080950 - L1_Mus1 LINE L1 -1 6566 5727 2 1550 392 330 39 50 chr3 126520549 126520731 -33079052 + MER2 DNA MER2_type 124 303 -42 2 1550 402 320 109 48 chr3 126521296 126521506 -33078277 + B4 SINE B4 48 270 -22 2 1550 1377 300 64 79 chr3 126521821 126522606 -33077177 - Lx9 LINE L1 -35 7609 6837 2 1550 291 114 0 0 chr3 126522697 126522741 -33077042 + (T)n Simple_repeat Simple_repeat 1 44 0 2 1550 241 340 53 0 chr3 126522773 126522867 -33076916 + MIRb SINE MIR 59 157 -111 2 1550 774 304 0 5 chr3 126522894 126523089 -33076694 + B3 SINE B2 23 216 0 2 1550 181 271 68 0 chr3 126523103 126523162 -33076621 + MIRb SINE MIR 178 240 -28 2 1550 204 67 0 0 chr3 126524030 126524060 -33075723 + (CAAGA)n Simple_repeat Simple_repeat 3 32 0 2 1550 2693 158 26 70 chr3 126524100 126524687 -33075096 - RLTR31_Mm LTR ERVK 0 561 1 2 1550 832 167 0 45 chr3 126524721 126524878 -33074905 - B1_Mur4 SINE Alu 0 150 1 2 1550 275 333 26 9 chr3 126525898 126526013 -33073770 + PB1D10 SINE Alu 1 117 0 3 1550 202 175 0 66 chr3 126526854 126526915 -33072868 + (TTTA)n Simple_repeat Simple_repeat 4 60 0 3 1550 680 23 12 0 chr3 126526915 126527001 -33072782 + (TC)n Simple_repeat Simple_repeat 2 88 0 3 1550 321 26 0 0 chr3 126527001 126527038 -33072745 + (TG)n Simple_repeat Simple_repeat 1 38 0 3 1550 490 296 16 16 chr3 126527069 126527196 -33072587 - RSINE1 SINE B4 -36 129 3 3 1550 233 270 12 108 chr3 126527472 126527555 -33072228 - ID4 SINE ID -6 77 3 3 1550 727 88 18 0 chr3 126527564 126527677 -33072106 + (TGG)n Simple_repeat Simple_repeat 1 115 0 3 1550 273 214 56 28 chr3 126527677 126527743 -33072040 - B1F SINE Alu -5 144 76 3 1550 303 122 0 0 chr3 126527855 126527904 -33071879 + (TCC)n Simple_repeat Simple_repeat 3 51 0 3 1550 782 187 15 0 chr3 126528206 126528340 -33071443 - B1_Mur2 SINE Alu -13 136 1 3 1550 24 0 0 0 chr3 126528604 126528628 -33071155 + AT_rich Low_complexity Low_complexity 1 24 0 4 1550 1020 233 0 0 chr3 126528674 126528876 -33070907 - B3 SINE B2 -14 202 1 4 1550 384 246 0 0 chr3 126531281 126531350 -33068433 - tRNA-Ala-GCY_ tRNA tRNA -6 69 1 4 1550 270 184 130 45 chr3 126531670 126531781 -33068002 - Lx9 LINE L1 -1 7643 7518 4 1550 245 29 29 0 chr3 126531781 126531815 -33067968 + (CA)n Simple_repeat Simple_repeat 2 36 0 4 1550 270 184 130 45 chr3 126531815 126531857 -33067926 - Lx9 LINE L1 -127 7517 7477 4 1550 770 239 4 45 chr3 126531868 126532113 -33067670 - Lx9 LINE L1 -127 7517 7283 4 1550 195 42 0 0 chr3 126532160 126532184 -33067599 + (TTTTTG)n Simple_repeat Simple_repeat 3 26 0 4 1550 216 86 0 0 chr3 126533765 126533800 -33065983 + (TTTG)n Simple_repeat Simple_repeat 4 38 0 4 1550 463 118 12 12 chr3 126534996 126535082 -33064701 + (TCC)n Simple_repeat Simple_repeat 3 88 0 4 1550 28 61 0 0 chr3 126536344 126536393 -33063390 + AT_rich Low_complexity Low_complexity 1 49 0 4 1550 359 293 57 0 chr3 126537225 126537348 -33062435 - MER5A1 DNA MER1_type -35 131 2 5 1550 242 220 0 48 chr3 126538596 126538658 -33061125 + MTEa LTR MaLR 273 331 -48 5 1550 949 87 29 0 chr3 126539443 126539615 -33060168 + (TAGA)n Simple_repeat Simple_repeat 4 180 0 5 1550 192 152 0 0 chr3 126546512 126546545 -33053238 + CT-rich Low_complexity Low_complexity 2 34 0 5 1550 24 0 0 0 chr3 126546696 126546720 -33053063 + AT_rich Low_complexity Low_complexity 1 24 0 5 1550 195 69 0 0 chr3 126547563 126547592 -33052191 + (T)n Simple_repeat Simple_repeat 1 29 0 5 1550 268 356 98 29 chr3 126548561 126548757 -33051026 + MIRb SINE MIR 13 228 -40 5 1550 21 57 0 0 chr3 126549272 126549307 -33050476 + AT_rich Low_complexity Low_complexity 1 35 0 5 1550 201 139 0 0 chr3 126549317 126549360 -33050423 + (TG)n Simple_repeat Simple_repeat 2 44 0 5 1550 689 344 22 18 chr3 126549530 126549758 -33050025 - B4A SINE B4 -62 230 2 5 1550 215 276 200 29 chr3 126549807 126549982 -33049801 + L2 LINE L2 1920 2124 -1295 6 1550 249 57 0 0 chr3 126550070 126550105 -33049678 + (A)n Simple_repeat Simple_repeat 1 35 0 6 1550 891 127 0 0 chr3 126550114 126550264 -33049519 + (TCC)n Simple_repeat Simple_repeat 2 151 0 6 1550 622 337 124 45 chr3 126550266 126550903 -33048880 + L2 LINE L2 2270 2956 -463 6 1550 318 206 0 0 chr3 126552303 126552376 -33047407 + GA-rich Low_complexity Low_complexity 4 76 0 6 1550 257 338 0 13 chr3 126552756 126552834 -33046949 - ID4_ SINE ID -4 79 3 6 1550 212 314 92 99 chr3 126552849 126552980 -33046803 - B1F1 SINE Alu -8 141 12 6 1550 646 229 57 0 chr3 126553466 126553606 -33046177 + B1_Mur1 SINE Alu 2 149 0 6 1550 1099 124 28 0 chr3 126554826 126555003 -33044780 + URR1A DNA MER1_type 45 226 0 6 1550 260 196 0 0 chr3 126555048 126555094 -33044689 - Lx9 LINE L1 -462 7182 7137 6 1550 1755 197 25 16 chr3 126555094 126555461 -33044322 + ORR1D1 LTR MaLR 1 370 -4 6 1550 25495 54 1 15 chr3 126555518 126559745 -33040038 - L1Md_F3 LINE L1 0 6584 2426 7 1550 255 152 0 0 chr3 126559748 126559794 -33039989 - L1Md_F3 LINE L1 -6020 704 659 7 1550 204 40 0 0 chr3 126559999 126560024 -33039759 + (TG)n Simple_repeat Simple_repeat 2 26 0 7 1550 6269 233 67 30 chr3 126560377 126562103 -33037680 + L1_Mur3 LINE L1 869 2712 -3168 7 1550 1780 188 58 16 chr3 126562103 126562481 -33037302 + ORR1B1 LTR MaLR 1 394 0 7 1550 6269 218 63 27 chr3 126562481 126563086 -33036697 + L1_Mur3 LINE L1 2713 3303 -2577 7 1550 4446 134 46 9 chr3 126563086 126563870 -33035913 + RLTR22_Mur LTR ERVK 1 813 -1035 7 1550 32231 92 9 4 chr3 126563911 126569826 -33029957 - L1Md_F2 LINE L1 -12 6570 621 7 1550 6292 91 7 12 chr3 126569882 126570832 -33028951 - L1_Mus3 LINE L1 -1 6637 5705 7 1550 225 288 88 56 chr3 126570896 126571021 -33028762 + RMER12 LTR ERVK 1133 1261 -61 7 1550 2061 206 186 31 chr3 126571054 126571767 -33028016 + L1_Mur3 LINE L1 3297 4120 -1760 7 1550 328 318 71 18 chr3 126571767 126571879 -33027904 + RSINE1 SINE B4 36 153 -12 7 1550 1780 208 13 24 chr3 126571879 126572254 -33027529 + ORR1D1 LTR MaLR 2 372 -2 7 1550 1647 32 0 0 chr3 126573326 126573515 -33026268 + B2_Mm1t SINE B2 1 189 -4 8 1550 198 0 0 0 chr3 126573539 126573561 -33026222 + (CA)n Simple_repeat Simple_repeat 1 22 0 8 1550 540 102 25 17 chr3 126573558 126573678 -33026105 + (CAGAGA)n Simple_repeat Simple_repeat 6 126 0 8 1550 687 318 108 30 chr3 126573955 126574224 -33025559 + B4A SINE B4 3 292 0 8 1550 465 272 178 9 chr3 126574965 126575291 -33024492 + L1MB8 LINE L1 5666 6046 -132 8 1550 372 319 35 0 chr3 126575700 126575844 -33023939 - B1F1 SINE Alu 0 149 1 8 1550 317 335 16 21 chr3 126576541 126576730 -33023053 + L1MC LINE L1 3297 3484 -2662 8 1550 1086 151 5 21 chr3 126576731 126576920 -33022863 + B2_Mm2 SINE B2 2 187 -8 8 1550 623 298 33 7 chr3 126576961 126577113 -33022670 + B3A SINE B2 1 156 -42 8 1550 540 0 0 0 chr3 126577116 126577176 -33022607 + (CA)n Simple_repeat Simple_repeat 2 61 0 8 1550 1405 271 58 6 chr3 126577246 126577591 -33022192 - MTD LTR MaLR -8 411 49 9 1550 13295 62 4 2 chr3 126577591 126579472 -33020311 - L1Md_F2 LINE L1 -642 5940 4057 9 1550 5230 41 3 3 chr3 126579472 126580110 -33019673 + L1Md_F2 LINE L1 5936 6573 -9 9 1550 467 109 0 0 chr3 126580137 126580201 -33019582 + B1_Mus1 SINE Alu 3 66 -82 9 1550 799 158 58 0 chr3 126580224 126580363 -33019420 + B1_Mus1 SINE Alu 2 148 0 9 1550 754 216 5 36 chr3 126580503 126580695 -33019088 - RLTR22_Mur LTR ERVK -37 1811 1626 9 1550 389 132 65 11 chr3 126580772 126580864 -33018919 - RLTR22_Mur LTR ERVK -830 1018 922 9 1550 324 70 0 0 chr3 126580906 126580949 -33018834 + (TA)n Simple_repeat Simple_repeat 1 43 0 9 1550 752 198 90 6 chr3 126580964 126581142 -33018641 - RLTR22_Mur LTR ERVK -1113 735 543 9 1550 1302 81 0 6 chr3 126581137 126581311 -33018472 - B2_Mm2 SINE B2 -21 174 2 9 1550 1290 189 118 7 chr3 126581312 126581616 -33018167 - RLTR22_Mur LTR ERVK -1293 555 218 9 1550 2726 144 9 0 chr3 126581616 126582074 -33017709 - L1_Mm LINE L1 -108 5775 5314 9 1550 288 87 109 0 chr3 126582063 126582109 -33017674 + L1_Mm LINE L1 4785 4835 -1048 9 1550 267 289 186 3 chr3 126582170 126582514 -33017269 + L1MC3 LINE L1 7366 7771 -14 1 1550 192 40 0 0 chr3 126582843 126582868 -33016915 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 1 1550 32 67 0 0 chr3 126583078 126583138 -33016645 + AT_rich Low_complexity Low_complexity 1 60 0 1 1550 294 338 25 0 chr3 126583541 126583621 -33016162 - MTD LTR MaLR -277 82 1 9 1550 476 296 3 0 chr3 126583901 126584018 -33015765 - B1F SINE Alu -30 119 1 1 1550 184 277 62 0 chr3 126584095 126584160 -33015623 - MER5A DNA MER1_type -44 145 77 1 1550 1841 136 77 3 chr3 126584161 126584471 -33015312 + RMER6C LTR ERVK 1 333 -357 1 1550 247 258 0 45 chr3 126584760 126584894 -33014889 - Lx9 LINE L1 -126 7518 7391 1 1550 495 87 0 0 chr3 126585640 126585709 -33014074 + (CGTG)n Simple_repeat Simple_repeat 2 70 0 1 1550 1888 139 38 171 chr3 126585797 126586293 -33013490 + RLTR23 LTR ERV1 1 430 0 1 1550 534 274 28 89 chr3 126586359 126586539 -33013244 - B4A SINE B4 -121 171 3 1 1550 30 0 0 0 chr3 126588448 126588478 -33011305 + AT_rich Low_complexity Low_complexity 1 30 0 1 1550 232 265 91 10 chr3 126588823 126588922 -33010861 + L2a LINE L2 3315 3421 -5 1 1550 22 0 0 0 chr3 126590067 126590089 -33009694 + AT_rich Low_complexity Low_complexity 1 22 0 1 1550 4332 119 49 0 chr3 126590159 126590807 -33008976 - Lx3C LINE L1 0 6976 6297 1 1550 585 229 144 0 chr3 126590971 126591124 -33008659 + Lx9 LINE L1 6318 6492 -1152 1 1550 318 256 156 7 chr3 126591153 126591388 -33008395 - L1M2 LINE L1 -537 5763 5473 1 1550 1554 225 32 17 chr3 126592402 126592699 -33007084 + ORR1C2 LTR MaLR 1 302 -82 1 1550 2000 175 11 33 chr3 126592699 126593066 -33006717 - ORR1B1 LTR MaLR 0 394 36 1 1550 484 167 0 12 chr3 126593062 126593147 -33006636 + ORR1C2 LTR MaLR 301 384 0 1 1550 321 344 50 18 chr3 126594329 126594439 -33005344 + L1_Rod LINE L1 523 632 -6976 1 1550 2203 175 15 15 chr3 126594439 126594846 -33004937 + MTB_Mm LTR MaLR 1 407 0 1 1550 321 344 50 18 chr3 126594846 126594954 -33004829 + L1_Rod LINE L1 633 748 -6860 1 1550 1926 220 152 11 chr3 126595031 126596619 -33003164 + L1_Rod LINE L1 749 2555 -3292 1 1550 28213 119 9 21 chr3 126596687 126601988 -32997795 + L1Md_F LINE L1 536 5787 -96 1 1550 4525 81 16 17 chr3 126601998 126602629 -32997154 + L1_Mus2 LINE L1 5936 6565 -1 1 1550 303 331 27 61 chr3 126603691 126603984 -32995799 + L1_Rod LINE L1 2200 2482 -3365 1 1550 2148 249 36 15 chr3 126604037 126604560 -32995223 - RLTR20C LTR ERVK 0 534 1 1 1550 682 316 85 34 chr3 126604596 126605162 -32994621 + L1M2 LINE L1 2575 3169 -2974 1 1550 202 121 30 0 chr3 126605385 126605418 -32994365 + GA-rich Low_complexity Low_complexity 2 35 0 1 1550 587 108 11 0 chr3 126605917 126606010 -32993773 + (TCTCCC)n Simple_repeat Simple_repeat 2 95 0 1 1550 227 31 31 0 chr3 126606012 126606044 -32993739 + (TG)n Simple_repeat Simple_repeat 1 33 0 1 1550 374 314 10 0 chr3 126606044 126606146 -32993637 - RSINE1 SINE B4 -40 125 23 1 1550 228 105 0 0 chr3 126606181 126606193 -32993590 + (A)n Simple_repeat Simple_repeat 1 12 0 1 1550 1195 28 28 0 chr3 126606193 126606336 -32993447 + B1_Mus2 SINE Alu 1 147 0 1 1550 228 105 0 0 chr3 126606336 126606361 -32993422 + (A)n Simple_repeat Simple_repeat 1 25 0 1 1550 315 0 0 0 chr3 126606458 126606493 -32993290 + (TG)n Simple_repeat Simple_repeat 2 36 0 1 1550 221 232 0 14 chr3 126607025 126607095 -32992688 + GA-rich Low_complexity Low_complexity 2 70 0 1 1550 3140 84 25 2 chr3 126607596 126608147 -32991636 - L1_Mus4 LINE L1 -711 5925 5360 1 1550 189 0 0 0 chr3 126608147 126608168 -32991615 + (TTG)n Simple_repeat Simple_repeat 1 21 0 1 1550 29443 41 33 13 chr3 126608186 126614183 -32985600 - L1Md_A LINE L1 -2 6580 509 1 1550 6056 122 23 16 chr3 126614182 126615213 -32984570 - L1VL2 LINE L1 -2514 1101 62 1 1550 649 162 0 22 chr3 126615368 126615507 -32984276 - Lx9 LINE L1 -6 7638 7503 1 1551 471 227 117 58 chr3 126615655 126615804 -32983979 + MLT2B4 LTR ERVL 327 487 -69 1 1551 192 40 0 0 chr3 126615804 126615829 -32983954 + (CAAAC)n Simple_repeat Simple_repeat 5 29 0 1 1551 471 227 117 58 chr3 126615829 126615885 -32983898 + MLT2B4 LTR ERVL 488 544 -12 1 1551 216 120 19 57 chr3 126615953 126616006 -32983777 + T-rich Low_complexity Low_complexity 2 52 0 1 1551 1297 212 125 37 chr3 126616006 126616038 -32983745 + MTD LTR MaLR 10 31 -388 1 1551 1239 170 4 9 chr3 126616038 126616264 -32983519 - URR1A DNA MER1_type 0 226 2 1 1551 1297 212 125 37 chr3 126616264 126616608 -32983175 + MTD LTR MaLR 32 419 0 1 1551 187 238 86 97 chr3 126616870 126616963 -32982820 + MIR SINE MIR 46 137 -125 1 1551 329 241 35 0 chr3 126617580 126617667 -32982116 + MLT1B LTR MaLR 5 94 -296 1 1551 8386 82 28 11 chr3 126618127 126619288 -32980495 + Lx3_Mus LINE L1 5830 7009 0 1 1551 202 61 0 57 chr3 126619289 126619324 -32980459 + (TAAAAA)n Simple_repeat Simple_repeat 3 35 0 1 1551 566 157 10 0 chr3 126619415 126619517 -32980266 - Lx4A LINE L1 -4 7054 6952 1 1551 3136 74 7 7 chr3 126619547 126619968 -32979815 + BGLII LTR ERVK 1 421 0 1 1551 546 253 59 84 chr3 126620190 126620393 -32979390 + MLT1B LTR MaLR 126 323 -67 1 1551 885 177 14 0 chr3 126620403 126620550 -32979233 + B1_Mur4 SINE Alu 2 150 0 1 1551 767 182 13 0 chr3 126620554 126620713 -32979070 + GA-rich Low_complexity Low_complexity 4 164 0 1 1551 783 62 0 116 chr3 126620701 126620739 -32979044 + polypurine Low_complexity Low_complexity 3 40 0 1 1551 1130 105 6 0 chr3 126620739 126620911 -32978872 + (GGAGA)n Simple_repeat Simple_repeat 3 175 0 1 1551 783 62 0 116 chr3 126620911 126621071 -32978712 + polypurine Low_complexity Low_complexity 41 178 0 1 1551 464 193 0 49 chr3 126621091 126621233 -32978550 + A-rich Low_complexity Low_complexity 2 136 0 1 1551 440 330 50 14 chr3 126621430 126621710 -32978073 + B4A SINE B4 1 290 -2 1 1551 224 303 0 38 chr3 126621710 126621841 -32977942 + (CATG)n Simple_repeat Simple_repeat 1 126 0 1 1551 357 24 0 0 chr3 126623859 126623901 -32975882 + (CA)n Simple_repeat Simple_repeat 2 43 0 1 1551 495 48 0 0 chr3 126623902 126623964 -32975819 + (GA)n Simple_repeat Simple_repeat 1 62 0 1 1551 22 0 0 0 chr3 126624730 126624752 -32975031 + AT_rich Low_complexity Low_complexity 1 22 0 1 1551 311 123 35 0 chr3 126625160 126625217 -32974566 + CT-rich Low_complexity Low_complexity 2 60 0 1 1551 414 0 0 0 chr3 126625591 126625637 -32974146 + (TG)n Simple_repeat Simple_repeat 1 46 0 1 1551 432 0 0 0 chr3 126625683 126625731 -32974052 + (GAAAA)n Simple_repeat Simple_repeat 2 49 0 1 1551 428 0 0 19 chr3 126627773 126627826 -32971957 + (TTA)n Simple_repeat Simple_repeat 1 52 0 1 1551 989 151 0 11 chr3 126628322 126628503 -32971280 + CT-rich Low_complexity Low_complexity 2 180 0 1 1551 24 0 0 0 chr3 126630176 126630200 -32969583 + AT_rich Low_complexity Low_complexity 1 24 0 1 1551 2466 61 6 3 chr3 126630715 126631029 -32968754 + L1_Mus3 LINE L1 6319 6633 -5 1 1551 407 277 49 14 chr3 126631091 126631234 -32968549 - B1F SINE Alu 0 149 2 1 1551 393 321 0 0 chr3 126633640 126633752 -32966031 - PB1D10 SINE Alu -5 112 1 1 1551 204 245 0 41 chr3 126634389 126634487 -32965296 + CT-rich Low_complexity Low_complexity 1 94 0 1 1551 326 302 28 28 chr3 126634489 126634598 -32965185 - PB1D10 SINE Alu -4 113 5 1 1551 441 0 0 0 chr3 126635312 126635361 -32964422 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 1551 1799 5 5 0 chr3 126638801 126639006 -32960777 - L1Md_A LINE L1 -1 6581 6376 1 1551 357 256 162 18 chr3 126639865 126640032 -32959751 - MER53 DNA hAT -1 192 2 1 1551 222 162 38 63 chr3 126640047 126640126 -32959657 + A-rich Low_complexity Low_complexity 4 80 0 1 1551 1216 34 0 39 chr3 126641037 126641190 -32958593 + B1_Mus2 SINE Alu 1 147 0 1 1551 265 0 75 0 chr3 126641280 126641320 -32958463 + (TAAAA)n Simple_repeat Simple_repeat 4 46 0 1 1551 601 273 45 0 chr3 126641522 126641654 -32958129 + B1_Mus2 SINE Alu 1 138 -9 1 1551 25 0 0 0 chr3 126642422 126642447 -32957336 + AT_rich Low_complexity Low_complexity 1 25 0 1 1551 429 285 80 0 chr3 126642582 126642719 -32957064 + B1F SINE Alu 2 149 0 1 1551 22 0 0 0 chr3 126642721 126642743 -32957040 + AT_rich Low_complexity Low_complexity 1 22 0 1 1551 303 122 0 0 chr3 126652175 126652224 -32947559 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 1551 22 35 0 0 chr3 126652224 126652253 -32947530 + AT_rich Low_complexity Low_complexity 1 29 0 1 1551 832 211 280 24 chr3 126652396 126652692 -32947091 + ORR1D1 LTR MaLR 3 374 0 1 1551 198 0 0 0 chr3 126654155 126654177 -32945606 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 1 1551 247 260 27 0 chr3 126654963 126655036 -32944747 - Charlie1 DNA MER1_type -2539 242 168 1 1551 515 234 110 42 chr3 126656407 126656644 -32943139 - L1MA9 LINE L1 -16 6296 6044 1 1551 276 240 277 0 chr3 126656654 126656895 -32942888 - L1MB4 LINE L1 -9 6171 5854 1 1551 622 279 104 26 chr3 126656921 126657190 -32942593 - L1MB3 LINE L1 -4 6179 5890 1 1551 378 0 0 0 chr3 126657469 126657511 -32942272 + (TC)n Simple_repeat Simple_repeat 1 42 0 1 1551 447 178 0 0 chr3 126657511 126657612 -32942171 + (CA)n Simple_repeat Simple_repeat 2 102 0 1 1551 31 44 0 0 chr3 126658551 126658596 -32941187 + AT_rich Low_complexity Low_complexity 1 45 0 1 1551 246 234 0 0 chr3 126659402 126659466 -32940317 + (TAAA)n Simple_repeat Simple_repeat 4 67 0 1 1551 280 292 0 0 chr3 126660401 126660466 -32939317 + ID2 SINE ID 9 73 -10 1 1551 1555 258 137 27 chr3 126660777 126661367 -32938416 + Lx8 LINE L1 6509 7163 -310 1 1551 296 158 34 34 chr3 126661366 126661425 -32938358 + Lx8 LINE L1 7271 7329 -144 1 1551 309 373 0 0 chr3 126661593 126661703 -32938080 - PB1D10 SINE Alu -7 110 1 1 1551 275 0 29 0 chr3 126662147 126662182 -32937601 + (TC)n Simple_repeat Simple_repeat 2 37 0 1 1551 261 0 0 0 chr3 126662182 126662210 -32937573 + (TA)n Simple_repeat Simple_repeat 2 30 0 1 1551 297 0 0 0 chr3 126662210 126662242 -32937541 + (TG)n Simple_repeat Simple_repeat 2 34 0 1 1551 240 35 0 0 chr3 126662281 126662310 -32937473 + (TG)n Simple_repeat Simple_repeat 1 29 0 1 1551 534 318 27 7 chr3 126662310 126662448 -32937335 - RSINE1 SINE B4 -16 149 8 2 1551 182 222 0 129 chr3 126668491 126668553 -32931230 - L3b LINE CR1 -13 469 416 2 1551 479 306 22 15 chr3 126669986 126670122 -32929661 - ID_B1 SINE B4 -5 219 83 2 1551 27 0 0 0 chr3 126671038 126671065 -32928718 + AT_rich Low_complexity Low_complexity 1 27 0 2 1551 439 31 31 0 chr3 126674972 126675037 -32924746 + (TG)n Simple_repeat Simple_repeat 1 67 0 2 1551 257 239 0 0 chr3 126675292 126675359 -32924424 + T-rich Low_complexity Low_complexity 1 67 0 2 1551 950 195 0 0 chr3 126675373 126675522 -32924261 - B1_Mur4 SINE Alu 0 150 2 2 1551 191 320 103 15 chr3 126676372 126676518 -32923265 - MIRb SINE MIR -93 175 15 2 1551 765 212 25 16 chr3 126676795 126676970 -32922813 - B3 SINE B2 -9 186 5 2 1551 270 240 0 0 chr3 126677084 126677134 -32922649 + polypyrimidine Low_complexity Low_complexity 1 50 0 2 1551 772 186 0 11 chr3 126677134 126677313 -32922470 + CT-rich Low_complexity Low_complexity 2 178 0 2 1551 181 0 69 0 chr3 126678254 126678283 -32921500 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2 1551 1094 51 0 0 chr3 126678285 126678422 -32921361 - B1_Mus1 SINE Alu 0 148 12 2 1551 217 250 0 62 chr3 126680301 126680365 -32919418 + polypyrimidine Low_complexity Low_complexity 3 62 0 2 1551 528 209 27 18 chr3 126680823 126680935 -32918848 - B1F SINE Alu 0 149 37 2 1551 303 239 0 14 chr3 126682045 126682117 -32917666 + HAL1-3A_ME LINE L1 1976 2046 -812 2 1551 28 0 0 0 chr3 126682518 126682546 -32917237 + AT_rich Low_complexity Low_complexity 1 28 0 2 1551 1122 188 53 28 chr3 126682641 126682888 -32916895 + Lx4B LINE L1 6802 7054 -4 2 1551 28 0 0 0 chr3 126684046 126684074 -32915709 + AT_rich Low_complexity Low_complexity 1 28 0 2 1551 215 323 64 56 chr3 126684232 126684376 -32915407 + MIRb SINE MIR 2 151 -125 2 1551 525 268 77 35 chr3 126684491 126684634 -32915149 + B1F SINE Alu 1 149 0 2 1551 189 264 0 0 chr3 126685314 126685424 -32914359 + (TG)n Simple_repeat Simple_repeat 1 110 0 2 1551 379 284 109 41 chr3 126685454 126685601 -32914182 - RSINE1 SINE B4 -2 163 7 2 1551 22 0 0 0 chr3 126686374 126686396 -32913387 + AT_rich Low_complexity Low_complexity 1 22 0 2 1551 1182 43 12 12 chr3 126687517 126687683 -32912100 + (TCTA)n Simple_repeat Simple_repeat 3 168 0 2 1551 561 229 196 6 chr3 126687684 126687842 -32911941 - B3 SINE B2 -18 198 11 2 1551 203 61 0 29 chr3 126688202 126688236 -32911547 + (TTG)n Simple_repeat Simple_repeat 2 34 0 2 1551 298 269 42 21 chr3 126688481 126688576 -32911207 + B3 SINE B2 114 210 -6 2 1551 687 225 7 35 chr3 126688765 126688908 -32910875 - B1_Mur2 SINE Alu -9 140 2 2 1551 295 310 4 14 chr3 126688915 126688998 -32910785 - AluF_3 SINE Alu -106 205 138 2 1551 21 0 0 0 chr3 126688998 126689019 -32910764 + AT_rich Low_complexity Low_complexity 1 21 0 2 1551 203 79 26 0 chr3 126689171 126689209 -32910574 + (CAAAAA)n Simple_repeat Simple_repeat 2 40 0 2 1551 216 0 0 0 chr3 126690102 126690126 -32909657 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2 1551 1271 133 108 5 chr3 126690300 126690504 -32909279 + URR1A DNA MER1_type 2 226 0 2 1551 243 273 188 0 chr3 126691789 126691917 -32907866 + MIR SINE MIR 73 224 -38 2 1551 677 288 40 86 chr3 126692089 126692339 -32907444 + L1MA8 LINE L1 5879 6106 -185 2 1551 652 308 32 41 chr3 126692339 126692559 -32907224 - ID_B1 SINE B4 -5 219 2 2 1551 677 288 40 86 chr3 126692559 126692737 -32907046 + L1MA8 LINE L1 6107 6287 -4 2 1551 1062 96 7 40 chr3 126693185 126693337 -32906446 + B1_Mus1 SINE Alu 2 148 0 2 1551 212 175 0 0 chr3 126693343 126693383 -32906400 + A-rich Low_complexity Low_complexity 1 40 0 2 1551 1230 113 33 22 chr3 126693383 126693564 -32906219 - B2_Mm2 SINE B2 -12 183 1 2 1551 182 37 37 0 chr3 126693952 126693979 -32905804 + (TA)n Simple_repeat Simple_repeat 1 28 0 2 1551 1032 279 38 35 chr3 126694453 126694743 -32905040 + B4A SINE B4 2 292 0 2 1551 1025 34 36 14 chr3 126694793 126694936 -32904847 + B1_Mus1 SINE Alu 11 219 -92 2 1551 413 183 0 0 chr3 126694972 126695043 -32904740 + B1F1 SINE Alu 68 138 -11 2 1551 291 297 102 19 chr3 126696188 126696394 -32903389 + Tigger13a DNA MER2_type 228 450 -321 2 1551 894 269 19 0 chr3 126696434 126696642 -32903141 - B3 SINE B2 -1 215 4 2 1551 403 200 0 0 chr3 126698025 126698095 -32901688 + B3 SINE B2 2 71 -145 2 1551 415 303 146 21 chr3 126698504 126698743 -32901040 - B4 SINE B4 -21 271 3 2 1551 25 0 0 0 chr3 126698886 126698911 -32900872 + AT_rich Low_complexity Low_complexity 1 25 0 2 1551 221 57 0 28 chr3 126699308 126699344 -32900439 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 2 1551 23 68 0 0 chr3 126699530 126699574 -32900209 + AT_rich Low_complexity Low_complexity 1 44 0 2 1551 221 83 28 0 chr3 126701728 126701764 -32898019 + (GGA)n Simple_repeat Simple_repeat 2 38 0 2 1551 574 178 0 53 chr3 126702457 126702570 -32897213 + B1_Mur3 SINE Alu 6 112 -37 2 1551 239 257 54 0 chr3 126702897 126702971 -32896812 - MIRb SINE MIR -99 169 92 2 1551 185 114 0 28 chr3 126705558 126705594 -32894189 - L4 LINE RTE -1805 224 190 2 1551 653 336 76 30 chr3 126705933 126706329 -32893454 + Lx8 LINE L1 6987 7400 -73 2 1551 301 182 54 0 chr3 126706359 126706507 -32893276 + (TA)n Simple_repeat Simple_repeat 1 156 0 2 1551 251 349 53 44 chr3 126707986 126708100 -32891683 - PB1 SINE Alu -2 125 11 2 1551 1295 263 122 3 chr3 126708840 126709445 -32890338 + RMER1A Other Other 15 517 -549 2 1551 561 197 143 58 chr3 126709430 126709619 -32890164 + RMER1B Other Other 861 1065 -1 2 1551 3268 259 88 34 chr3 126710208 126711328 -32888455 + Lx8 LINE L1 6291 7471 -2 2 1551 343 292 0 45 chr3 126711779 126711890 -32887893 + MLT1A1 LTR MaLR 268 373 -35 2 1551 819 86 8 0 chr3 126711890 126712007 -32887776 - Lx LINE L1 -599 6055 5938 2 1551 4238 101 46 10 chr3 126712007 126712598 -32887185 + Lx LINE L1 6039 6650 -4 2 1551 267 173 0 0 chr3 126713632 126713684 -32886099 + (CA)n Simple_repeat Simple_repeat 1 52 0 2 1551 245 189 13 51 chr3 126713998 126714076 -32885707 + (CA)n Simple_repeat Simple_repeat 2 76 0 2 1551 192 283 36 108 chr3 126714342 126714453 -32885330 - L3 LINE CR1 -293 4196 4094 2 1551 670 157 7 7 chr3 126715283 126715424 -32884359 + (TA)n Simple_repeat Simple_repeat 1 141 0 2 1551 31 58 0 0 chr3 126717340 126717392 -32882391 + AT_rich Low_complexity Low_complexity 1 52 0 2 1551 658 237 110 30 chr3 126718204 126718404 -32881379 - B3 SINE B2 0 216 1 2 1551 575 271 259 35 chr3 126718943 126719233 -32880550 + ORR1E LTR MaLR 5 359 0 2 1551 707 279 68 5 chr3 126720169 126720360 -32879423 - B3 SINE B2 -9 207 5 2 1551 279 0 0 0 chr3 126721746 126721777 -32878006 + (TTTG)n Simple_repeat Simple_repeat 1 31 0 2 1551 234 306 141 0 chr3 126724150 126724235 -32875548 + MTE2a LTR MaLR 6 102 -277 2 1551 304 288 12 12 chr3 126724248 126724329 -32875454 - ID SINE ID -138 86 6 2 1551 604 266 116 5 chr3 126724485 126724674 -32875109 - B3 SINE B2 -4 212 3 2 1551 410 299 110 98 chr3 126725776 126726102 -32873681 + MTEa LTR MaLR 48 377 -2 2 1551 26 88 0 0 chr3 126727705 126727773 -32872010 + AT_rich Low_complexity Low_complexity 1 68 0 2 1551 23 0 0 0 chr3 126727828 126727851 -32871932 + AT_rich Low_complexity Low_complexity 1 23 0 2 1551 26 0 0 0 chr3 126728138 126728164 -32871619 + AT_rich Low_complexity Low_complexity 1 26 0 2 1551 429 278 97 0 chr3 126728804 126728980 -32870803 + MER53 DNA hAT 1 193 0 2 1551 905 166 0 0 chr3 126729386 126729531 -32870252 + B1_Mus2 SINE Alu 3 147 0 2 1551 1109 111 0 3 chr3 126729906 126730188 -32869595 + (TG)n Simple_repeat Simple_repeat 1 281 0 2 1551 867 259 44 51 chr3 126730213 126730233 -32869550 - B4A SINE B4 0 292 273 2 1551 1371 41 0 0 chr3 126730233 126730455 -32869328 + (TG)n Simple_repeat Simple_repeat 1 222 0 2 1551 867 259 44 51 chr3 126730455 126730724 -32869059 - B4A SINE B4 -20 272 5 2 1551 204 40 0 0 chr3 126731708 126731733 -32868050 + (TG)n Simple_repeat Simple_repeat 1 25 0 2 1551 241 279 22 34 chr3 126731755 126731844 -32867939 - PB1D10 SINE Alu -28 89 2 2 1551 216 143 0 0 chr3 126732040 126732082 -32867701 + (CA)n Simple_repeat Simple_repeat 2 43 0 2 1551 677 317 33 19 chr3 126733845 126734057 -32865726 - ID_B1 SINE B4 -8 216 2 2 1551 608 215 41 0 chr3 126734622 126734743 -32865040 - B1_Mus2 SINE Alu -21 126 1 2 1551 2604 229 28 14 chr3 126736857 126737848 -32861935 + L1_Mur3 LINE L1 856 1860 -4020 2 1551 313 321 198 31 chr3 126738042 126738659 -32861124 - L2 LINE L2 -612 2807 2088 2 1551 468 0 0 0 chr3 126739315 126739367 -32860416 + (CA)n Simple_repeat Simple_repeat 2 53 0 2 1551 181 282 0 0 chr3 126739517 126739556 -32860227 + L2a LINE L2 3351 3389 -37 2 1551 243 0 0 0 chr3 126740045 126740072 -32859711 + (TTGG)n Simple_repeat Simple_repeat 2 28 0 2 1551 774 120 128 0 chr3 126740180 126740305 -32859478 + B1_Mus2 SINE Alu 1 141 -6 2 1551 564 15 0 0 chr3 126740311 126740376 -32859407 + (TCTA)n Simple_repeat Simple_repeat 2 66 0 2 1551 240 187 53 13 chr3 126740379 126740455 -32859328 + (TA)n Simple_repeat Simple_repeat 1 79 0 2 1551 381 93 0 0 chr3 126740637 126740691 -32859092 + (TG)n Simple_repeat Simple_repeat 2 55 0 2 1551 27 29 0 0 chr3 126740829 126740863 -32858920 + AT_rich Low_complexity Low_complexity 1 34 0 2 1551 296 157 22 0 chr3 126741931 126742020 -32857763 + (CAGAGA)n Simple_repeat Simple_repeat 6 96 0 2 1551 474 18 0 0 chr3 126742935 126742990 -32856793 + (TC)n Simple_repeat Simple_repeat 2 56 0 2 1551 1576 181 88 131 chr3 126742992 126743444 -32856339 - RMER16 LTR ERVK -81 452 20 3 1551 780 261 100 54 chr3 126743818 126744097 -32855686 - B4 SINE B4 0 292 1 3 1551 489 110 0 0 chr3 126744180 126744253 -32855530 + (CA)n Simple_repeat Simple_repeat 1 73 0 3 1551 338 29 86 29 chr3 126745821 126745891 -32853892 + (TCTCTG)n Simple_repeat Simple_repeat 2 75 0 3 1551 390 127 0 0 chr3 126745923 126745994 -32853789 + (TG)n Simple_repeat Simple_repeat 2 72 0 3 1552 201 158 0 0 chr3 126746932 126746970 -32852813 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 3 1552 1152 117 65 30 chr3 126747387 126747647 -32852136 - Lx3_Mus LINE L1 -4 6977 6707 3 1552 414 0 0 0 chr3 126747747 126747793 -32851990 + (CA)n Simple_repeat Simple_repeat 1 46 0 3 1552 401 345 26 13 chr3 126747822 126748051 -32851732 - Lx9 LINE L1 -216 7428 7197 3 1552 484 275 7 60 chr3 126748104 126748255 -32851528 - B1F SINE Alu 0 149 7 3 1552 1142 111 0 5 chr3 126748475 126748685 -32851098 + (TTTC)n Simple_repeat Simple_repeat 1 208 0 3 1552 256 320 54 99 chr3 126748692 126748803 -32850980 - B1F1 SINE Alu -43 106 1 3 1552 605 294 12 64 chr3 126748803 126748878 -32850905 - ID SINE ID -153 71 6 3 1552 197 276 240 41 chr3 126748908 126749029 -32850754 - MIRb SINE MIR -77 191 47 3 1552 491 295 21 7 chr3 126750204 126750344 -32849439 - B1F SINE Alu -7 142 1 3 1552 463 259 165 0 chr3 126750767 126750937 -32848846 - B3A SINE B2 0 198 1 3 1552 425 325 150 31 chr3 126751606 126751866 -32847917 - B4A SINE B4 0 292 2 3 1552 726 238 122 14 chr3 126752059 126752272 -32847511 + Lx6 LINE L1 7210 7445 -15 3 1552 981 145 30 18 chr3 126753075 126753244 -32846539 + RMER15 LTR ERVL 1 171 -404 3 1552 359 212 110 0 chr3 126753245 126753363 -32846420 + Lx4B LINE L1 6888 7018 -40 3 1552 41 0 0 0 chr3 126753487 126753528 -32846255 + AT_rich Low_complexity Low_complexity 1 41 0 3 1552 532 150 31 8 chr3 126753528 126753656 -32846127 + GA-rich Low_complexity Low_complexity 3 133 0 3 1552 1851 163 76 14 chr3 126753656 126754010 -32845773 + RMER15 LTR ERVL 200 575 0 3 1552 22 35 0 0 chr3 126754070 126754099 -32845684 + AT_rich Low_complexity Low_complexity 1 29 0 3 1552 23 0 0 0 chr3 126755406 126755429 -32844354 + AT_rich Low_complexity Low_complexity 1 23 0 3 1552 4603 33 5 2 chr3 126756720 126757273 -32842510 - L1Md_F3 LINE L1 -15 6569 6015 3 1552 369 0 0 0 chr3 126757959 126758000 -32841783 + (TG)n Simple_repeat Simple_repeat 2 42 0 3 1552 22 0 0 0 chr3 126758269 126758291 -32841492 + AT_rich Low_complexity Low_complexity 1 22 0 3 1552 1058 149 124 0 chr3 126760303 126760504 -32839279 + URR1A DNA MER1_type 1 226 0 3 1552 268 188 14 14 chr3 126760558 126760628 -32839155 + (TA)n Simple_repeat Simple_repeat 1 70 0 3 1552 2128 209 52 15 chr3 126761074 126761551 -32838232 - Lx5 LINE L1 0 7050 6556 3 1552 4409 81 57 2 chr3 126761843 126762458 -32837325 + L1_Mus2 LINE L1 5917 6565 -1 3 1552 422 316 68 94 chr3 126763424 126763763 -32836020 - ORR1E LTR MaLR -17 342 13 3 1552 486 284 84 76 chr3 126763895 126764158 -32835625 + MLT1D LTR MaLR 226 490 -15 3 1552 24 53 0 0 chr3 126764778 126764816 -32834967 + AT_rich Low_complexity Low_complexity 1 38 0 3 1552 345 236 0 0 chr3 126764945 126765017 -32834766 + B4A SINE B4 3 74 -218 3 1552 7104 60 2 3 chr3 126765082 126766057 -32833726 + L1_Mm LINE L1 3638 4611 -1272 3 1552 2567 71 21 21 chr3 126766057 126766429 -32833354 + L1Md_F2 LINE L1 6211 6582 0 3 1552 412 211 32 222 chr3 126767686 126767875 -32831908 + B4A SINE B4 138 290 -2 3 1552 530 319 188 19 chr3 126768006 126768418 -32831365 + MLT1F LTR MaLR 68 539 -9 3 1552 833 236 58 24 chr3 126770033 126770241 -32829542 + B3 SINE B2 2 216 0 3 1552 968 199 59 56 chr3 126770344 126770442 -32829341 - Lx9 LINE L1 -34 7610 7517 3 1552 225 0 0 0 chr3 126770442 126770467 -32829316 + (TG)n Simple_repeat Simple_repeat 2 26 0 3 1552 968 199 59 56 chr3 126770467 126770656 -32829127 - Lx9 LINE L1 -128 7516 7322 3 1552 4126 221 85 20 chr3 126770706 126771843 -32827940 + Lx9 LINE L1 6093 7303 -341 3 1552 340 316 50 43 chr3 126771911 126772050 -32827733 + RSINE1 SINE B4 8 147 -18 3 1552 200 86 29 0 chr3 126772435 126772470 -32827313 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 3 1552 357 24 0 0 chr3 126774785 126774827 -32824956 + (CA)n Simple_repeat Simple_repeat 2 43 0 3 1552 684 135 0 0 chr3 126775422 126775533 -32824250 + (GGGA)n Simple_repeat Simple_repeat 3 113 0 3 1552 512 310 120 34 chr3 126775924 126776191 -32823592 + B4A SINE B4 1 290 -2 3 1552 283 216 17 0 chr3 126776194 126776310 -32823473 + (CA)n Simple_repeat Simple_repeat 2 119 0 3 1552 263 93 23 0 chr3 126776318 126776361 -32823422 + (CAGA)n Simple_repeat Simple_repeat 1 44 0 3 1552 207 0 0 0 chr3 126776651 126776674 -32823109 + (CAA)n Simple_repeat Simple_repeat 2 24 0 3 1552 231 325 158 12 chr3 126776774 126776945 -32822838 - MIRb SINE MIR -14 254 56 3 1552 206 219 0 0 chr3 126777796 126777837 -32821946 + GA-rich Low_complexity Low_complexity 4 44 0 3 1552 248 244 198 0 chr3 126778959 126779045 -32820738 + MER5A DNA MER1_type 82 184 -5 3 1552 2198 68 3 7 chr3 126780722 126781019 -32818764 - L1_Mus2 LINE L1 0 6566 6271 3 1552 216 0 0 0 chr3 126781103 126781127 -32818656 + (TG)n Simple_repeat Simple_repeat 1 24 0 3 1552 449 244 229 6 chr3 126781252 126781409 -32818374 + B3A SINE B2 1 192 -6 3 1552 228 265 0 0 chr3 126781947 126781996 -32817787 + ID4_ SINE ID 25 73 -10 3 1552 249 33 0 0 chr3 126782351 126782381 -32817402 + (A)n Simple_repeat Simple_repeat 1 30 0 3 1552 180 0 0 0 chr3 126782919 126782939 -32816844 + (GAA)n Simple_repeat Simple_repeat 3 22 0 3 1552 22 0 0 0 chr3 126783045 126783067 -32816716 + AT_rich Low_complexity Low_complexity 1 22 0 3 1552 816 283 47 0 chr3 126783303 126783494 -32816289 + B3 SINE B2 6 205 -11 3 1552 2123 58 4 4 chr3 126783507 126783782 -32816001 - L1_Mus2 LINE L1 0 6566 6292 3 1552 24 32 0 0 chr3 126783783 126783814 -32815969 + AT_rich Low_complexity Low_complexity 1 31 0 3 1552 299 339 17 26 chr3 126783874 126783989 -32815794 + B4A SINE B4 169 282 -10 3 1552 1179 266 69 26 chr3 126784431 126785087 -32814696 + L1MA6 LINE L1 4570 5299 -844 3 1552 706 114 0 24 chr3 126785091 126785217 -32814566 + (GAAA)n Simple_repeat Simple_repeat 2 124 0 3 1552 1236 270 160 11 chr3 126785225 126785855 -32813928 + L1MA6 LINE L1 5318 6041 -259 3 1552 456 51 0 0 chr3 126785862 126785921 -32813862 + (GA)n Simple_repeat Simple_repeat 2 60 0 3 1552 507 240 28 6 chr3 126785929 126786105 -32813678 + L1MA6 LINE L1 6121 6300 0 3 1552 779 302 58 14 chr3 126786457 126786728 -32813055 + B4A SINE B4 26 292 0 3 1552 604 259 53 26 chr3 126787086 126787237 -32812546 + RSINE1 SINE B4 11 165 0 3 1552 694 185 25 0 chr3 126787237 126787394 -32812389 + (TATG)n Simple_repeat Simple_repeat 2 162 0 3 1552 345 365 160 16 chr3 126787742 126788054 -32811729 + L4 LINE RTE 1176 1532 -497 3 1552 1952 238 55 136 chr3 126789431 126789839 -32809944 + RLTR40 LTR ERVK 1 349 -468 3 1552 1616 110 0 24 chr3 126789839 126790091 -32809692 + L1Md_F2 LINE L1 6324 6569 -13 3 1552 1952 238 55 136 chr3 126790091 126790508 -32809275 + RLTR40 LTR ERVK 350 759 -58 3 1552 24 32 0 0 chr3 126790627 126790658 -32809125 + AT_rich Low_complexity Low_complexity 1 31 0 3 1552 559 218 89 110 chr3 126790659 126790850 -32808933 - B3A SINE B2 -11 187 1 3 1552 305 143 29 0 chr3 126791106 126791176 -32808607 + (CAGAGA)n Simple_repeat Simple_repeat 2 73 0 3 1552 1160 100 35 6 chr3 126793723 126793894 -32805889 - B2_Mm2 SINE B2 -17 178 3 3 1552 24 0 0 0 chr3 126794059 126794083 -32805700 + AT_rich Low_complexity Low_complexity 1 24 0 3 1552 1175 182 14 19 chr3 126794759 126794972 -32804811 + B3 SINE B2 1 212 -4 3 1552 507 33 0 0 chr3 126795694 126795755 -32804028 + (TC)n Simple_repeat Simple_repeat 1 61 0 3 1552 216 86 0 0 chr3 126795769 126795804 -32803979 + (GA)n Simple_repeat Simple_repeat 2 36 0 3 1552 1898 334 193 32 chr3 126796423 126798439 -32801344 + L2 LINE L2 235 2609 -810 3 1552 1832 192 108 80 chr3 126798439 126798937 -32800846 + RLTR18B LTR ERVK 1 512 0 3 1552 1898 334 193 32 chr3 126798937 126799339 -32800444 + L2 LINE L2 2610 3042 -377 3 1552 980 94 0 13 chr3 126799509 126799660 -32800123 + (TCC)n Simple_repeat Simple_repeat 2 150 0 3 1552 539 255 0 0 chr3 126799667 126799769 -32800014 - PB1D9 SINE Alu -18 102 1 3 1552 1287 230 109 15 chr3 126799800 126800131 -32799652 - ORR1D1 LTR MaLR -7 367 6 3 1552 1974 230 10 31 chr3 126800673 126801090 -32798693 + MTD LTR MaLR 5 412 -7 3 1552 751 172 20 46 chr3 126801860 126802012 -32797771 + B1_Mur4 SINE Alu 2 149 -1 3 1552 24 0 0 0 chr3 126802384 126802408 -32797375 + AT_rich Low_complexity Low_complexity 1 24 0 3 1552 198 361 27 18 chr3 126803326 126803436 -32796347 + MIRb SINE MIR 126 236 -32 3 1552 318 106 0 0 chr3 126804317 126804364 -32795419 + (CA)n Simple_repeat Simple_repeat 2 48 0 3 1552 220 70 47 0 chr3 126805219 126805262 -32794521 + (TA)n Simple_repeat Simple_repeat 1 45 0 3 1552 293 66 66 0 chr3 126805303 126805364 -32794419 + (TA)n Simple_repeat Simple_repeat 2 66 0 3 1552 354 123 0 0 chr3 126805390 126805447 -32794336 + (CA)n Simple_repeat Simple_repeat 2 58 0 3 1552 2083 243 133 46 chr3 126805457 126805672 -32794111 - RCHARR1 DNA MER1_type -101 873 669 3 1552 847 146 7 27 chr3 126805672 126805820 -32793963 - B1_Mur4 SINE Alu -5 145 1 3 1552 2083 243 133 46 chr3 126805820 126806403 -32793380 - RCHARR1 DNA MER1_type -306 668 6 3 1552 344 22 22 0 chr3 126806556 126806601 -32793182 + (CA)n Simple_repeat Simple_repeat 2 47 0 3 1552 419 179 0 13 chr3 126806852 126806931 -32792852 - ID_B1 SINE B4 -1 223 146 3 1552 3179 74 42 2 chr3 126807117 126807564 -32792219 + L1_Mus3 LINE L1 6169 6633 -5 3 1552 317 313 52 63 chr3 126808148 126808322 -32791461 - B4A SINE B4 -32 260 89 3 1552 904 178 6 49 chr3 126808355 126808538 -32791245 - Lx4A LINE L1 -3 7055 6881 3 1552 1214 146 14 0 chr3 126808538 126808751 -32791032 + L1_Mur2 LINE L1 4664 4879 -998 4 1552 657 162 0 0 chr3 126808911 126809065 -32790718 + GA-rich Low_complexity Low_complexity 3 156 0 4 1552 946 117 0 11 chr3 126809081 126809262 -32790521 + (GGA)n Simple_repeat Simple_repeat 2 180 0 4 1552 355 53 35 17 chr3 126809264 126809322 -32790461 + (GGAGAA)n Simple_repeat Simple_repeat 2 60 0 4 1552 870 82 0 15 chr3 126809704 126809841 -32789942 + Lx4A LINE L1 6921 7055 -3 4 1552 26 74 0 0 chr3 126810667 126810721 -32789062 + AT_rich Low_complexity Low_complexity 1 54 0 4 1552 22 0 0 0 chr3 126810732 126810754 -32789029 + AT_rich Low_complexity Low_complexity 1 22 0 4 1552 452 203 170 38 chr3 126811355 126811514 -32788269 + B3A SINE B2 3 182 -16 4 1552 311 238 25 0 chr3 126812144 126812224 -32787559 + HAL1-3A_ME LINE L1 1968 2049 -809 4 1552 455 235 0 16 chr3 126813011 126813193 -32786590 + (TG)n Simple_repeat Simple_repeat 2 180 0 4 1552 667 280 21 94 chr3 126814933 126815118 -32784665 - B3 SINE B2 0 216 34 4 1552 781 187 0 0 chr3 126815118 126815252 -32784531 + B1_Mur1 SINE Alu 1 134 -15 4 1552 667 280 21 94 chr3 126815252 126815299 -32784484 - B3 SINE B2 -183 33 1 4 1552 544 270 136 10 chr3 126815404 126815602 -32784181 - ID_B1 SINE B4 0 224 2 4 1552 406 49 82 0 chr3 126815796 126815857 -32783926 + B1_Mm SINE Alu 82 147 0 4 1552 315 0 0 0 chr3 126815913 126815948 -32783835 + (TAGA)n Simple_repeat Simple_repeat 2 36 0 4 1552 2788 205 82 22 chr3 126820527 126821239 -32778544 + Lx7 LINE L1 6067 6820 -876 4 1552 1503 87 39 0 chr3 126821239 126821445 -32778338 + MTB LTR MaLR 187 400 0 4 1552 532 175 8 34 chr3 126821445 126821563 -32778220 + Lx7 LINE L1 7564 7678 -18 4 1552 646 187 0 13 chr3 126821581 126821733 -32778050 + (TA)n Simple_repeat Simple_repeat 2 151 0 4 1552 641 295 133 51 chr3 126821781 126822159 -32777624 + MER57C2 LTR ERV1 7 411 0 4 1552 795 191 15 0 chr3 126823128 126823264 -32776519 - B1_Mur2 SINE Alu -10 139 2 4 1552 1037 253 116 3 chr3 126823383 126823712 -32776071 + ORR1D2 LTR MaLR 5 370 0 4 1552 214 320 0 74 chr3 126825206 126825287 -32774496 - L2b LINE L2 -2 3373 3299 4 1552 538 216 1 29 chr3 126825817 126825936 -32773847 + B1_Mur4 SINE Alu 19 136 -14 4 1552 206 246 25 76 chr3 126829330 126829409 -32770374 - MIR3 SINE MIR -5 203 129 4 1552 420 150 0 0 chr3 126831357 126831437 -32768346 + (TCTA)n Simple_repeat Simple_repeat 4 83 0 4 1552 501 248 134 0 chr3 126831971 126832128 -32767655 + B3A SINE B2 5 182 -16 4 1552 346 206 0 15 chr3 126832378 126832452 -32767331 + B4 SINE B4 7 79 -213 4 1552 662 258 5 96 chr3 126832520 126832647 -32767136 + B4 SINE B4 100 218 -74 4 1552 225 0 0 0 chr3 126832647 126832672 -32767111 + (CAAA)n Simple_repeat Simple_repeat 3 27 0 4 1552 662 258 5 96 chr3 126832672 126832727 -32767056 + B4 SINE B4 219 266 -26 4 1552 264 122 0 0 chr3 126832727 126832768 -32767015 + (CA)n Simple_repeat Simple_repeat 1 41 0 4 1552 662 258 5 96 chr3 126832768 126832781 -32767002 + B4 SINE B4 267 278 -14 4 1552 677 285 40 10 chr3 126832812 126833014 -32766769 + B3 SINE B2 1 208 -8 4 1552 333 0 0 0 chr3 126834588 126834625 -32765158 + (TTA)n Simple_repeat Simple_repeat 2 38 0 4 1552 278 301 0 52 chr3 126834738 126834815 -32764968 - B4A SINE B4 0 292 220 4 1552 23 0 0 0 chr3 126834815 126834838 -32764945 + AT_rich Low_complexity Low_complexity 1 23 0 4 1552 243 0 0 0 chr3 126834914 126834941 -32764842 + (GA)n Simple_repeat Simple_repeat 1 27 0 4 1552 257 16 15 88 chr3 126835327 126835395 -32764388 + (CAAA)n Simple_repeat Simple_repeat 2 64 0 4 1552 404 301 19 53 chr3 126835461 126835638 -32764145 - B4A SINE B4 -68 224 3 4 1552 180 233 93 0 chr3 126837681 126837724 -32762059 - L2a LINE L2 -1 3425 3379 4 1552 272 27 27 0 chr3 126838189 126838226 -32761557 + (CA)n Simple_repeat Simple_repeat 1 38 0 4 1552 441 0 0 0 chr3 126838226 126838274 -32761509 + (GA)n Simple_repeat Simple_repeat 2 50 0 4 1552 298 244 144 0 chr3 126838985 126839075 -32760708 - PB1D10 SINE Alu -14 103 1 4 1552 24 0 0 0 chr3 126839500 126839524 -32760259 + AT_rich Low_complexity Low_complexity 1 24 0 4 1552 21 0 0 0 chr3 126840260 126840281 -32759502 + AT_rich Low_complexity Low_complexity 1 21 0 4 1552 23 33 0 0 chr3 126841375 126841405 -32758378 + AT_rich Low_complexity Low_complexity 1 30 0 4 1552 927 236 14 24 chr3 126841408 126841530 -32758253 + B3 SINE B2 6 126 -90 4 1552 4216 19 4 0 chr3 126841530 126842010 -32757773 - LTRIS_Mm LTR ERV1 0 482 1 4 1552 927 236 14 24 chr3 126842010 126842100 -32757683 + B3 SINE B2 127 216 0 4 1552 459 125 0 0 chr3 126842143 126842215 -32757568 + (TA)n Simple_repeat Simple_repeat 2 73 0 4 1552 360 43 0 0 chr3 126843369 126843415 -32756368 + (A)n Simple_repeat Simple_repeat 1 46 0 4 1552 36725 6 0 0 chr3 126843790 126849145 -32750638 + L1Md_A LINE L1 231 5586 -297 4 1552 9057 3 0 0 chr3 126849145 126850141 -32749642 + L1Md_A LINE L1 5587 6582 0 4 1552 398 221 79 0 chr3 126850693 126850820 -32748963 - L1MC4a LINE L1 -1200 6842 6682 4 1552 303 28 0 0 chr3 126850824 126850860 -32748923 + (CA)n Simple_repeat Simple_repeat 2 37 0 4 1552 29 28 0 0 chr3 126850991 126851027 -32748756 + AT_rich Low_complexity Low_complexity 1 36 0 4 1552 487 180 9 9 chr3 126851090 126851202 -32748581 + (TA)n Simple_repeat Simple_repeat 2 113 0 4 1552 2018 171 62 13 chr3 126851203 126851577 -32748206 + ORR1B1 LTR MaLR 2 393 -1 4 1552 244 102 41 0 chr3 126851577 126851626 -32748157 + (TA)n Simple_repeat Simple_repeat 1 51 0 4 1552 198 67 0 62 chr3 126852056 126852104 -32747679 + (CAAAA)n Simple_repeat Simple_repeat 1 45 0 4 1552 450 0 0 0 chr3 126852141 126852191 -32747592 + (CA)n Simple_repeat Simple_repeat 1 50 0 4 1552 1133 246 64 6 chr3 126852229 126852572 -32747211 - Lx7 LINE L1 -375 7321 6959 4 1552 362 228 109 0 chr3 126852933 126853034 -32746749 - Lx7 LINE L1 -709 6987 6876 4 1552 331 209 104 0 chr3 126853343 126853410 -32746373 + ID4_ SINE ID 5 78 -5 4 1552 811 150 6 70 chr3 126853751 126853909 -32745874 + B1_Mur3 SINE Alu 2 149 0 4 1552 572 0 0 14 chr3 126853909 126853978 -32745805 + (TAGA)n Simple_repeat Simple_repeat 2 69 0 4 1552 988 279 58 4 chr3 126855532 126855791 -32743992 - B4A SINE B4 -5 287 15 4 1552 340 342 0 32 chr3 126856031 126856155 -32743628 + ID_B1 SINE B4 103 222 -2 4 1552 239 267 33 16 chr3 126856165 126856226 -32743557 + ID2 SINE ID 3 64 -19 4 1552 201 39 0 0 chr3 126856889 126856915 -32742868 + (A)n Simple_repeat Simple_repeat 1 26 0 4 1552 450 0 0 0 chr3 126857116 126857166 -32742617 + (TC)n Simple_repeat Simple_repeat 1 50 0 4 1552 429 20 0 0 chr3 126857166 126857215 -32742568 + (CA)n Simple_repeat Simple_repeat 1 50 0 4 1552 906 204 94 0 chr3 126857572 126857763 -32742020 + B3 SINE B2 2 210 -6 4 1552 642 58 0 0 chr3 126858618 126858705 -32741078 + (TATAG)n Simple_repeat Simple_repeat 5 91 0 4 1552 706 200 7 22 chr3 126858802 126858940 -32740843 + B1_Mur3 SINE Alu 1 136 -13 4 1552 489 250 109 30 chr3 126859283 126859448 -32740335 - Tigger7 DNA MER2_type -6 2485 2308 4 1552 409 302 74 21 chr3 126860273 126860465 -32739318 + MIRb SINE MIR 28 231 -31 4 1552 490 322 0 14 chr3 126860544 126860692 -32739091 + B1_Mur2 SINE Alu 3 148 -1 4 1552 556 317 93 50 chr3 126860833 126861092 -32738691 - B4A SINE B4 -22 270 1 4 1552 261 128 0 0 chr3 126861575 126861622 -32738161 + (TA)n Simple_repeat Simple_repeat 1 47 0 4 1552 249 58 38 19 chr3 126862573 126862626 -32737157 + (TTTTG)n Simple_repeat Simple_repeat 2 55 0 4 1552 27 0 0 0 chr3 126863523 126863550 -32736233 + AT_rich Low_complexity Low_complexity 1 27 0 4 1552 204 97 0 0 chr3 126865281 126865312 -32734471 + (CCG)n Simple_repeat Simple_repeat 3 33 0 4 1552 207 0 0 0 chr3 126866318 126866341 -32733442 + (GTTTG)n Simple_repeat Simple_repeat 2 24 0 4 1552 273 57 0 0 chr3 126868644 126868679 -32731104 + (ATG)n Simple_repeat Simple_repeat 3 37 0 4 1552 1295 37 12 0 chr3 126869464 126869628 -32730155 + (GGGAGA)n Simple_repeat Simple_repeat 4 169 0 4 1552 39 38 0 0 chr3 126869674 126869727 -32730056 + AT_rich Low_complexity Low_complexity 1 53 0 4 1552 547 256 32 8 chr3 126870281 126870407 -32729376 + RSINE1 SINE B4 1 129 -36 4 1552 593 277 174 0 chr3 126870406 126870601 -32729182 + B4 SINE B4 64 292 0 4 1552 22 56 0 0 chr3 126871523 126871559 -32728224 + AT_rich Low_complexity Low_complexity 1 36 0 4 1552 525 121 71 16 chr3 126871822 126871948 -32727835 + L1Md_T LINE L1 6438 6570 -12 4 1552 666 183 0 16 chr3 126871956 126872078 -32727705 - B3A SINE B2 -78 120 1 4 1552 500 365 75 11 chr3 126872855 126873215 -32726568 - LTR53 LTR ERVL -132 387 5 4 1552 566 312 6 0 chr3 126874258 126874418 -32725365 + RSINE1 SINE B4 3 163 -2 4 1552 227 337 82 39 chr3 126874482 126874738 -32725045 + Tigger13a DNA MER2_type 312 578 -193 4 1552 1019 249 9 0 chr3 126874845 126875062 -32724721 - ID_B1 SINE B4 -4 220 2 4 1552 26 50 0 0 chr3 126875064 126875104 -32724679 + AT_rich Low_complexity Low_complexity 1 40 0 4 1552 210 176 0 0 chr3 126875372 126875406 -32724377 + (TA)n Simple_repeat Simple_repeat 2 35 0 4 1552 231 133 0 0 chr3 126875408 126875453 -32724330 + (GA)n Simple_repeat Simple_repeat 2 46 0 4 1552 25 31 0 0 chr3 126876551 126876583 -32723200 + AT_rich Low_complexity Low_complexity 1 32 0 4 1553 465 34 0 0 chr3 126877844 126877903 -32721880 + (TC)n Simple_repeat Simple_repeat 1 59 0 4 1553 315 164 10 6 chr3 126879467 126879554 -32720229 + B1F SINE Alu 28 148 -1 4 1553 23 0 0 0 chr3 126879559 126879582 -32720201 + AT_rich Low_complexity Low_complexity 1 23 0 4 1553 506 16 16 0 chr3 126879596 126879659 -32720124 + (TAGA)n Simple_repeat Simple_repeat 4 67 0 4 1553 36 77 0 0 chr3 126879702 126879780 -32720003 + AT_rich Low_complexity Low_complexity 1 78 0 4 1553 234 272 86 0 chr3 126880115 126880196 -32719587 + L2 LINE L2 2037 2124 -1295 4 1553 365 0 22 0 chr3 126881180 126881225 -32718558 + (TAGA)n Simple_repeat Simple_repeat 4 49 0 4 1553 818 91 0 8 chr3 126881267 126881389 -32718394 + (CATATA)n Simple_repeat Simple_repeat 4 124 0 5 1553 1389 271 88 90 chr3 126881736 126881991 -32717792 - L1MC LINE L1 -2020 4126 3932 5 1553 438 20 0 0 chr3 126881991 126882042 -32717741 + (GA)n Simple_repeat Simple_repeat 2 52 0 5 1553 1389 271 88 90 chr3 126882042 126882919 -32716864 - L1MC LINE L1 -2215 3931 2996 5 1553 246 282 74 98 chr3 126883249 126883371 -32716412 + PB1D9 SINE Alu 1 119 -1 5 1553 1187 104 6 23 chr3 126883547 126883704 -32716079 + B2_Mm1t SINE B2 3 160 -33 5 1553 270 56 0 0 chr3 126883704 126883740 -32716043 + (TAAA)n Simple_repeat Simple_repeat 3 38 0 5 1553 1187 104 6 23 chr3 126883740 126883759 -32716024 + B2_Mm1t SINE B2 161 175 -18 5 1553 297 329 111 41 chr3 126884501 126884672 -32715111 + MLT1J LTR MaLR 184 366 -146 5 1553 211 325 0 25 chr3 126884919 126884998 -32714785 - B2_Mm2 SINE B2 -118 77 1 5 1553 261 339 90 111 chr3 126885568 126885900 -32713883 + MLT1A1 LTR MaLR 54 378 -30 5 1553 873 0 0 0 chr3 126886794 126886891 -32712892 + (GAAA)n Simple_repeat Simple_repeat 4 100 0 5 1553 296 214 39 39 chr3 126887382 126887484 -32712299 + L1MA10 LINE L1 6202 6303 -31 5 1553 700 228 30 87 chr3 126888229 126888460 -32711323 - ID_B1 SINE B4 -2 222 5 5 1553 411 241 44 22 chr3 126888636 126888772 -32711011 - B1F SINE Alu -6 143 5 5 1553 889 140 70 43 chr3 126889286 126889472 -32710311 - B2_Mm2 SINE B2 -3 192 2 5 1553 342 0 0 0 chr3 126889884 126889922 -32709861 + (TC)n Simple_repeat Simple_repeat 1 38 0 5 1553 324 0 0 0 chr3 126889922 126889957 -32709826 + (CA)n Simple_repeat Simple_repeat 1 36 0 5 1553 320 0 25 0 chr3 126890061 126890101 -32709682 + (CA)n Simple_repeat Simple_repeat 1 41 0 5 1553 225 0 0 0 chr3 126890455 126890480 -32709303 + (GA)n Simple_repeat Simple_repeat 2 26 0 5 1553 522 0 0 0 chr3 126890589 126890647 -32709136 + (TC)n Simple_repeat Simple_repeat 1 58 0 5 1553 27 62 0 0 chr3 126890933 126890981 -32708802 + AT_rich Low_complexity Low_complexity 1 48 0 5 1553 876 222 19 15 chr3 126891078 126891284 -32708499 + B3 SINE B2 5 211 -5 5 1553 311 254 0 69 chr3 126892240 126892371 -32707412 + BC1_Mm scRNA scRNA 1 122 -30 5 1553 192 77 0 0 chr3 126893170 126893196 -32706587 + (TCCA)n Simple_repeat Simple_repeat 4 29 0 5 1553 288 252 175 0 chr3 126893206 126893309 -32706474 - RSINE1 SINE B4 -36 129 9 5 1553 989 182 78 34 chr3 126894117 126894322 -32705461 + B3 SINE B2 1 214 -2 5 1553 24 77 0 0 chr3 126894934 126894986 -32704797 + AT_rich Low_complexity Low_complexity 1 52 0 5 1553 267 79 0 0 chr3 126895740 126895778 -32704005 + (TCC)n Simple_repeat Simple_repeat 1 38 0 5 1553 220 292 115 0 chr3 126895815 126895911 -32703872 - ID_B1 SINE B4 -48 176 70 5 1553 393 39 0 0 chr3 126896236 126896287 -32703496 + (CA)n Simple_repeat Simple_repeat 1 51 0 5 1553 2059 89 71 62 chr3 126896617 126896940 -32702843 - ORR1A2 LTR MaLR -1 326 1 5 1553 431 272 80 0 chr3 126897202 126897327 -32702456 - RSINE1 SINE B4 -29 136 2 5 1553 606 51 0 0 chr3 126897370 126897448 -32702335 + (TG)n Simple_repeat Simple_repeat 1 78 0 5 1553 189 0 0 0 chr3 126897866 126897887 -32701896 + (CCA)n Simple_repeat Simple_repeat 1 21 0 5 1553 1248 210 41 7 chr3 126898448 126898741 -32701042 + MTD LTR MaLR 2 304 -115 5 1553 277 289 24 81 chr3 126900206 126900330 -32699453 + PB1D10 SINE Alu 1 117 0 5 1553 402 74 0 0 chr3 126900738 126900792 -32698991 + (TG)n Simple_repeat Simple_repeat 1 54 0 5 1553 414 0 0 0 chr3 126900799 126900845 -32698938 + (CA)n Simple_repeat Simple_repeat 2 47 0 5 1553 438 299 72 7 chr3 126900853 126900991 -32698792 - B3A SINE B2 -45 153 7 5 1553 1207 101 28 0 chr3 126901413 126901591 -32698192 + B2_Mm2 SINE B2 2 184 -11 5 1553 198 71 0 0 chr3 126902712 126902740 -32697043 + (GTTTG)n Simple_repeat Simple_repeat 2 29 0 5 1553 394 297 18 9 chr3 126902740 126902852 -32696931 - PB1D7 SINE Alu -1 119 7 5 1553 222 105 0 0 chr3 126904310 126904348 -32695435 + (A)n Simple_repeat Simple_repeat 1 38 0 5 1553 699 131 70 122 chr3 126904352 126904508 -32695275 + B1_Mur4 SINE Alu 3 150 0 5 1553 517 233 142 38 chr3 126904801 126904984 -32694799 - B3 SINE B2 0 216 15 5 1553 1046 246 94 50 chr3 126905619 126905979 -32693804 - MTE2a LTR MaLR -3 376 1 5 1553 1100 278 96 24 chr3 126906301 126906677 -32693106 - MTD LTR MaLR -16 403 1 5 1553 225 0 0 0 chr3 126907762 126907787 -32691996 + (A)n Simple_repeat Simple_repeat 1 25 0 5 1553 228 67 0 0 chr3 126908055 126908085 -32691698 + (CAG)n Simple_repeat Simple_repeat 1 30 0 5 1553 1105 62 7 14 chr3 126908301 126908448 -32691335 + B1_Mus1 SINE Alu 2 147 -1 5 1553 793 268 5 20 chr3 126908510 126908712 -32691071 + ID_B1 SINE B4 17 215 -9 5 1553 279 0 0 0 chr3 126908720 126908751 -32691032 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 5 1553 266 145 129 70 chr3 126908755 126908855 -32690928 + PB1D10 SINE Alu 3 127 0 5 1553 673 211 21 21 chr3 126909319 126909464 -32690319 + RSINE1 SINE B4 3 147 -18 5 1553 208 221 39 0 chr3 126909559 126909636 -32690147 + (TA)n Simple_repeat Simple_repeat 1 80 0 5 1553 886 185 7 0 chr3 126909699 126909845 -32689938 + B1_Mur3 SINE Alu 3 149 0 5 1553 21 57 0 0 chr3 126909946 126909981 -32689802 + AT_rich Low_complexity Low_complexity 1 35 0 5 1553 686 209 14 7 chr3 126910005 126910145 -32689638 - B1F SINE Alu -7 142 2 5 1553 180 0 0 0 chr3 126910278 126910298 -32689485 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 5 1553 529 143 169 40 chr3 126910312 126910436 -32689347 - B2_Mm2 SINE B2 -55 140 1 5 1553 198 0 0 0 chr3 126910493 126910515 -32689268 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 5 1553 1036 45 0 0 chr3 126910519 126910652 -32689131 - B1_Mm SINE Alu -6 141 9 5 1553 223 241 68 0 chr3 126912885 126912951 -32686832 + MIR SINE MIR 97 177 -91 5 1553 1159 81 0 0 chr3 126913444 126913592 -32686191 - B1_Mus1 SINE Alu 0 148 1 5 1553 195 167 0 0 chr3 126915392 126915434 -32684349 + (CA)n Simple_repeat Simple_repeat 1 42 0 5 1553 641 315 80 5 chr3 126915651 126915852 -32683931 + ID_B1 SINE B4 2 217 -7 5 1553 270 0 0 0 chr3 126916461 126916491 -32683292 + (TTTTG)n Simple_repeat Simple_repeat 3 32 0 5 1553 1035 228 190 26 chr3 126916540 126916851 -32682932 - ORR1D2 LTR MaLR -4 366 5 5 1553 1254 34 0 0 chr3 126917546 126917692 -32682091 + B1_Mm SINE Alu 2 147 0 5 1553 216 0 0 0 chr3 126917692 126917716 -32682067 + (A)n Simple_repeat Simple_repeat 1 24 0 5 1553 466 175 5 19 chr3 126917822 126917939 -32681844 + B1F SINE Alu 6 149 0 5 1553 381 43 0 0 chr3 126918345 126918392 -32681391 + (TG)n Simple_repeat Simple_repeat 2 48 0 5 1553 459 286 25 0 chr3 126918392 126918511 -32681272 - RSINE1 SINE B4 -41 124 3 5 1553 277 229 28 9 chr3 126918695 126918801 -32680982 + (TA)n Simple_repeat Simple_repeat 2 109 0 5 1553 418 170 7 26 chr3 126918894 126919045 -32680738 + (TA)n Simple_repeat Simple_repeat 1 148 0 5 1553 26 0 0 0 chr3 126919128 126919154 -32680629 + AT_rich Low_complexity Low_complexity 1 26 0 5 1553 737 238 0 0 chr3 126919199 126919363 -32680420 + ID_B1 SINE B4 61 224 0 5 1553 27 0 0 0 chr3 126919494 126919521 -32680262 + AT_rich Low_complexity Low_complexity 1 27 0 5 1553 202 158 26 0 chr3 126919688 126919726 -32680057 + CT-rich Low_complexity Low_complexity 1 39 0 5 1553 744 243 0 0 chr3 126921031 126921179 -32678604 + B1_Mus1 SINE Alu 1 148 0 5 1553 498 297 7 13 chr3 126921236 126921386 -32678397 + B1_Mur1 SINE Alu 1 149 0 5 1553 242 94 0 54 chr3 126921404 126921460 -32678323 + (A)n Simple_repeat Simple_repeat 1 53 0 5 1553 534 31 0 0 chr3 126921586 126921650 -32678133 + (TG)n Simple_repeat Simple_repeat 2 65 0 5 1553 219 250 229 0 chr3 126922365 126922461 -32677322 - L3 LINE CR1 -57 4432 4315 5 1553 392 259 58 41 chr3 126922791 126922912 -32676871 + RSINE1 SINE B4 42 164 -1 5 1553 679 241 54 20 chr3 126923075 126923278 -32676505 - B3 SINE B2 -5 211 2 5 1553 575 253 54 13 chr3 126923929 126924153 -32675630 + MER90a LTR ERV1 87 319 -295 5 1553 258 32 0 0 chr3 126924176 126924207 -32675576 + (T)n Simple_repeat Simple_repeat 1 31 0 5 1553 1102 50 50 0 chr3 126924207 126924347 -32675436 - B1_Mm SINE Alu 0 147 1 5 1553 236 77 26 0 chr3 126924679 126924718 -32675065 + (TAAAAA)n Simple_repeat Simple_repeat 2 41 0 5 1553 644 300 61 81 chr3 126925234 126925531 -32674252 + B4 SINE B4 2 292 0 5 1553 1888 223 55 24 chr3 126925579 126925891 -32673892 + Lx5 LINE L1 6586 6897 -153 5 1553 504 0 0 0 chr3 126925891 126925947 -32673836 + (TG)n Simple_repeat Simple_repeat 2 57 0 5 1553 1888 223 55 24 chr3 126925947 126926085 -32673698 + Lx5 LINE L1 6898 7049 -1 5 1553 1476 53 15 45 chr3 126926103 126926301 -32673482 + B2_Mm2 SINE B2 1 192 -3 5 1553 240 35 0 0 chr3 126926301 126926330 -32673453 + (TAAA)n Simple_repeat Simple_repeat 1 29 0 5 1553 216 224 17 0 chr3 126927006 126927064 -32672719 + (TA)n Simple_repeat Simple_repeat 2 60 0 5 1553 396 0 0 0 chr3 126928239 126928283 -32671500 + (A)n Simple_repeat Simple_repeat 1 44 0 5 1553 326 185 12 0 chr3 126928566 126928647 -32671136 + (CA)n Simple_repeat Simple_repeat 1 82 0 5 1553 319 274 56 156 chr3 126931158 126931467 -32668316 - MLT1A1 LTR MaLR 0 408 83 5 1553 323 254 44 35 chr3 126931896 126932010 -32667773 + PB1D10 SINE Alu 1 115 -2 5 1553 339 228 0 0 chr3 126932020 126932099 -32667684 + PB1D10 SINE Alu 10 88 -29 5 1553 402 108 0 0 chr3 126932119 126932193 -32667590 + (CA)n Simple_repeat Simple_repeat 2 75 0 6 1553 408 181 0 23 chr3 126932215 126932329 -32667454 + B1_Mus2 SINE Alu 42 150 0 6 1553 234 0 0 0 chr3 126932420 126932446 -32667337 + (TTTTG)n Simple_repeat Simple_repeat 4 29 0 6 1553 261 289 40 0 chr3 126932750 126932826 -32666957 - MIR SINE MIR -109 153 75 6 1553 250 215 30 30 chr3 126933204 126933271 -32666512 + MamRep1161 DNA TcMar 32 98 -859 6 1553 243 339 68 71 chr3 126933484 126933764 -32666019 + MLT1C LTR MaLR 65 343 -124 6 1553 269 294 18 0 chr3 126933782 126933891 -32665892 + CT-rich Low_complexity Low_complexity 2 112 0 6 1553 765 251 67 20 chr3 126933893 126934088 -32665695 - ID_B1 SINE B4 -16 208 5 6 1553 497 55 14 0 chr3 126934906 126934979 -32664804 + (TG)n Simple_repeat Simple_repeat 2 75 0 6 1553 216 0 0 0 chr3 126934984 126935008 -32664775 + (CAGA)n Simple_repeat Simple_repeat 2 25 0 6 1553 378 0 0 0 chr3 126935008 126935050 -32664733 + (TGAA)n Simple_repeat Simple_repeat 1 42 0 6 1553 754 252 104 23 chr3 126935091 126935351 -32664432 - B4A SINE B4 -11 281 1 6 1553 988 256 38 92 chr3 126935351 126935721 -32664062 + MTEa LTR MaLR 27 376 -3 6 1553 252 0 0 0 chr3 126936413 126936441 -32663342 + (CA)n Simple_repeat Simple_repeat 1 28 0 6 1553 417 39 0 0 chr3 126936441 126936491 -32663292 + (GA)n Simple_repeat Simple_repeat 2 52 0 6 1553 403 312 59 60 chr3 126936813 126937175 -32662608 - MLT2B2 LTR ERVL -23 539 92 6 1553 312 213 107 0 chr3 126937360 126937435 -32662348 + MLT1A0 LTR MaLR 272 354 -11 6 1553 432 286 128 55 chr3 126937504 126937778 -32662005 + ORR1E LTR MaLR 61 354 -5 6 1553 212 191 0 21 chr3 126938420 126938455 -32661328 + (CTG)n Simple_repeat Simple_repeat 1 35 0 6 1553 828 71 0 0 chr3 126938455 126938567 -32661216 + (TTTC)n Simple_repeat Simple_repeat 2 113 0 6 1553 212 191 0 21 chr3 126938567 126938579 -32661204 + (CTG)n Simple_repeat Simple_repeat 1 12 0 6 1553 864 209 75 33 chr3 126939903 126940101 -32659682 + ID_B1 SINE B4 3 213 -11 6 1553 387 0 0 0 chr3 126940101 126940144 -32659639 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 6 1553 864 209 75 33 chr3 126940144 126940158 -32659625 + ID_B1 SINE B4 214 224 0 6 1553 1978 118 138 9 chr3 126940443 126940777 -32659006 - ORR1C1 LTR MaLR -1 377 1 6 1553 310 278 159 72 chr3 126940885 126941318 -32658465 - MLT1H1 LTR MaLR -8 547 53 6 1553 567 326 26 15 chr3 126941477 126941745 -32658038 + RMER15 LTR ERVL 292 562 -13 6 1553 641 260 28 0 chr3 126941930 126942107 -32657676 + B3A SINE B2 2 183 -15 6 1553 583 250 16 8 chr3 126942973 126943098 -32656685 - RSINE1 SINE B4 -19 146 21 6 1553 209 33 0 32 chr3 126943431 126943462 -32656321 + (TTTTTG)n Simple_repeat Simple_repeat 2 31 0 6 1553 209 0 71 24 chr3 126943501 126943543 -32656240 + (TTG)n Simple_repeat Simple_repeat 2 45 0 6 1553 211 267 0 0 chr3 126943976 126944021 -32655762 - L2c LINE L2 -49 3338 3294 6 1553 444 264 69 8 chr3 126945432 126945562 -32654221 - B3A SINE B2 -3 195 58 6 1553 504 0 0 0 chr3 126947982 126948038 -32651745 + (TG)n Simple_repeat Simple_repeat 1 56 0 6 1553 189 147 0 0 chr3 126948456 126948490 -32651293 + (TCTG)n Simple_repeat Simple_repeat 4 37 0 6 1553 511 256 25 0 chr3 126948742 126948879 -32650904 - B1F SINE Alu -9 140 1 6 1553 592 208 48 0 chr3 126951694 126951819 -32647964 - B1F SINE Alu -18 131 1 6 1553 341 289 57 36 chr3 126952203 126952220 -32647563 + B1F SINE Alu 6 144 -1 6 1553 510 235 8 0 chr3 126952220 126952339 -32647444 + ID_B1 SINE B4 104 223 -1 6 1553 1159 205 144 12 chr3 126953018 126953344 -32646439 - ORR1D2 LTR MaLR 0 370 2 6 1553 1156 203 54 186 chr3 126954678 126954885 -32644898 + ORR1C2 LTR MaLR 1 180 -204 6 1553 477 34 0 0 chr3 126954885 126954944 -32644839 + (TG)n Simple_repeat Simple_repeat 2 60 0 6 1553 1156 203 54 186 chr3 126954944 126955178 -32644605 + ORR1C2 LTR MaLR 181 384 0 6 1553 554 42 0 0 chr3 126955854 126955925 -32643858 - B1_Mur4 SINE Alu -9 141 71 6 1553 225 0 0 0 chr3 126956122 126956147 -32643636 + (CA)n Simple_repeat Simple_repeat 1 25 0 6 1553 399 41 0 0 chr3 126956902 126956951 -32642832 + (TG)n Simple_repeat Simple_repeat 1 49 0 6 1553 1575 125 39 196 chr3 126956982 126957421 -32642362 - ORR1C1 LTR MaLR -8 370 1 6 1553 225 255 147 11 chr3 126957643 126957738 -32642045 - PB1D10 SINE Alu 0 117 10 6 1553 452 281 0 79 chr3 126957884 126958023 -32641760 + ID_B1 SINE B4 84 211 -13 6 1553 477 136 0 0 chr3 126958094 126958197 -32641586 + (GA)n Simple_repeat Simple_repeat 2 104 0 6 1553 606 184 43 17 chr3 126958200 126958316 -32641467 - B1_Mus2 SINE Alu -15 132 14 6 1553 218 303 67 47 chr3 126959285 126959434 -32640349 + L2a LINE L2 3216 3367 -59 6 1553 287 274 0 23 chr3 126959740 126959826 -32639957 - ID_B1 SINE B4 -11 213 130 6 1553 1257 41 0 0 chr3 126960110 126960256 -32639527 + B1_Mm SINE Alu 1 146 -1 6 1553 261 0 0 0 chr3 126960258 126960287 -32639496 + (A)n Simple_repeat Simple_repeat 1 29 0 6 1553 408 267 69 57 chr3 126960994 126961153 -32638630 + RSINE1 SINE B4 5 165 0 6 1553 300 186 0 0 chr3 126961156 126961215 -32638568 + (CA)n Simple_repeat Simple_repeat 2 60 0 6 1553 336 102 0 0 chr3 126961214 126961263 -32638520 + (GA)n Simple_repeat Simple_repeat 2 50 0 6 1553 408 291 36 18 chr3 126961771 126961883 -32637900 - RSINE1 SINE B4 -14 151 38 6 1553 233 98 24 0 chr3 126961905 126961946 -32637837 + (CAAA)n Simple_repeat Simple_repeat 3 44 0 6 1553 25 51 0 0 chr3 126962314 126962353 -32637430 + AT_rich Low_complexity Low_complexity 1 39 0 6 1553 25 0 0 0 chr3 126962774 126962799 -32636984 + AT_rich Low_complexity Low_complexity 1 25 0 6 1553 210 87 65 0 chr3 126964482 126964528 -32635255 + A-rich Low_complexity Low_complexity 4 52 0 6 1553 351 113 0 0 chr3 126964523 126964576 -32635207 + (GGGA)n Simple_repeat Simple_repeat 4 56 0 6 1553 703 281 68 22 chr3 126964607 126964764 -32635019 + B4 SINE B4 47 214 -78 6 1553 716 86 0 9 chr3 126964764 126964870 -32634913 + (GAAA)n Simple_repeat Simple_repeat 4 108 0 6 1553 1279 67 6 6 chr3 126964870 126965050 -32634733 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 6 1553 703 281 68 22 chr3 126965050 126965113 -32634670 + B4 SINE B4 215 277 -15 6 1553 222 91 0 0 chr3 126965115 126965148 -32634635 + (CA)n Simple_repeat Simple_repeat 1 33 0 6 1553 411 269 19 0 chr3 126965503 126965607 -32634176 + PB1D10 SINE Alu 3 108 -9 6 1553 32 26 0 0 chr3 126965662 126965701 -32634082 + AT_rich Low_complexity Low_complexity 1 39 0 6 1553 274 182 13 25 chr3 126965836 126965915 -32633868 + (TTTG)n Simple_repeat Simple_repeat 3 80 0 6 1553 822 271 59 127 chr3 126966255 126966797 -32632986 + RLTR16 LTR ERVK 1 505 0 6 1553 1772 32 9 26 chr3 126966846 126967073 -32632710 + L1Md_F3 LINE L1 6361 6583 -1 6 1553 689 0 0 12 chr3 126967162 126967244 -32632539 + (GAAA)n Simple_repeat Simple_repeat 2 82 0 6 1553 499 200 0 79 chr3 126967302 126967416 -32632367 + ID_B1 SINE B4 104 208 -16 6 1553 238 323 31 0 chr3 126967587 126967652 -32632131 + ID4_ SINE ID 8 74 -9 6 1553 324 314 15 92 chr3 126967687 126967817 -32631966 + ID_B1 SINE B4 84 203 -21 6 1553 776 242 158 43 chr3 126968051 126968444 -32631339 - RMER10A LTR ERVL -4 438 1 6 1553 252 0 0 0 chr3 126969724 126969752 -32630031 + (GA)n Simple_repeat Simple_repeat 2 29 0 6 1553 254 221 13 90 chr3 126969772 126969801 -32629982 + MER34 LTR ERV1 1 25 -517 6 1553 923 182 0 0 chr3 126969801 126969949 -32629834 + B1_Mur2 SINE Alu 1 148 -1 6 1553 254 219 13 89 chr3 126969949 126970021 -32629762 + MER34 LTR ERV1 26 92 -450 6 1553 273 222 83 36 chr3 126970036 126970120 -32629663 + PB1 SINE Alu 25 112 -15 6 1553 207 100 0 0 chr3 126970121 126970151 -32629632 + (TGG)n Simple_repeat Simple_repeat 1 30 0 6 1553 269 318 50 38 chr3 126970178 126970338 -32629445 + MER34 LTR ERV1 76 237 -305 6 1553 273 239 21 14 chr3 126970416 126970495 -32629288 + B1_Mur1 SINE Alu 21 130 -19 6 1553 460 248 30 78 chr3 126971470 126971636 -32628147 - RSINE1 SINE B4 -6 159 2 6 1553 552 180 48 83 chr3 126972238 126972383 -32627400 - B1_Mur4 SINE Alu 0 150 11 6 1553 349 182 0 0 chr3 126972403 126972469 -32627314 - MTEb LTR MaLR -313 66 1 6 1553 336 299 60 34 chr3 126974565 126974714 -32625069 + MER34A LTR ERV1 49 201 -370 6 1553 316 277 75 0 chr3 126974874 126974968 -32624815 + MER34A LTR ERV1 466 566 -5 6 1553 201 39 0 0 chr3 126975103 126975129 -32624654 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 6 1553 392 278 0 0 chr3 126975166 126975263 -32624520 - ID_B1 SINE B4 -8 216 120 6 1553 574 312 89 31 chr3 126977544 126977868 -32621915 - L1ME1 LINE L1 -15 6164 5822 6 1553 212 184 0 0 chr3 126977981 126978019 -32621764 + A-rich Low_complexity Low_complexity 1 38 0 6 1553 262 292 0 30 chr3 126978160 126978227 -32621556 + PB1D10 SINE Alu 1 65 -52 6 1553 341 286 57 9 chr3 126978479 126978585 -32621198 + PB1D7 SINE Alu 7 117 -3 6 1553 368 302 118 0 chr3 126978577 126978696 -32621087 + RSINE1 SINE B4 27 159 -6 6 1553 479 60 0 15 chr3 126978696 126978764 -32621019 + (GA)n Simple_repeat Simple_repeat 1 67 0 6 1553 316 273 20 29 chr3 126979199 126979301 -32620482 + PB1D10 SINE Alu 9 109 -8 6 1553 497 274 8 8 chr3 126980091 126980358 -32619425 + GA-rich Low_complexity Low_complexity 1 267 0 6 1553 658 216 58 75 chr3 126980665 126980905 -32618878 - Lx8 LINE L1 -1 7472 7237 6 1553 1148 131 4 88 chr3 126980905 126981131 -32618652 - ORR1A4 LTR MaLR -122 207 1 6 1553 951 261 5 0 chr3 126981131 126981346 -32618437 - Lx8 LINE L1 -270 7203 6988 6 1553 2300 288 70 7 chr3 126981353 126982042 -32617741 + Lx8 LINE L1 4899 5622 -258 6 1553 243 0 0 0 chr3 126982042 126982069 -32617714 + (TA)n Simple_repeat Simple_repeat 2 28 0 6 1553 2300 288 70 7 chr3 126982069 126982202 -32617581 + Lx8 LINE L1 5623 5772 -108 6 1553 207 0 0 0 chr3 126982212 126982235 -32617548 + (TTTTTG)n Simple_repeat Simple_repeat 6 28 0 7 1553 949 32 8 0 chr3 126982235 126982360 -32617423 - B1_Mus1 SINE Alu 0 148 23 7 1553 840 59 0 0 chr3 126982368 126982487 -32617296 + (TG)n Simple_repeat Simple_repeat 2 120 0 7 1553 769 126 85 23 chr3 126982487 126982617 -32617166 - B1_Mur3 SINE Alu -9 140 3 7 1553 799 273 46 62 chr3 126982728 126983033 -32616750 + Lx8 LINE L1 6102 6401 -1072 6 1553 562 194 16 24 chr3 126983208 126983335 -32616448 - B1F SINE Alu -2 147 22 7 1553 520 244 89 84 chr3 126983366 126983545 -32616238 + B3A SINE B2 3 182 -16 7 1553 24 77 0 0 chr3 126983576 126983628 -32616155 + AT_rich Low_complexity Low_complexity 1 52 0 7 1553 861 241 11 0 chr3 126984137 126984324 -32615459 + ID_B1 SINE B4 2 190 -34 7 1553 396 0 0 0 chr3 126984572 126984616 -32615167 + (CA)n Simple_repeat Simple_repeat 1 44 0 7 1553 327 264 19 19 chr3 126984703 126984811 -32614972 + MLT1A1 LTR MaLR 301 408 0 7 1553 914 216 45 0 chr3 126985788 126985987 -32613796 + B3 SINE B2 6 213 -3 7 1553 1876 238 22 78 chr3 126985988 126986613 -32613170 + Lx7 LINE L1 7103 7692 -4 7 1553 5158 48 47 2 chr3 126988417 126989057 -32610726 - L1_Mus1 LINE L1 0 6567 5899 7 1553 727 210 217 43 chr3 126989200 126989384 -32610399 + B3 SINE B2 1 216 0 7 1553 277 319 61 61 chr3 126989695 126989925 -32609858 + L1MA6 LINE L1 6062 6291 -9 7 1553 307 222 0 0 chr3 126989935 126990007 -32609776 + L1MA7 LINE L1 6197 6268 -23 7 1553 351 65 0 0 chr3 126990093 126990139 -32609644 + (CAAG)n Simple_repeat Simple_repeat 2 47 0 7 1553 306 0 0 0 chr3 126990422 126990456 -32609327 + (TG)n Simple_repeat Simple_repeat 2 35 0 7 1553 468 0 0 0 chr3 126990692 126990744 -32609039 + (CA)n Simple_repeat Simple_repeat 1 52 0 7 1553 549 105 0 0 chr3 126990744 126990839 -32608944 + (GA)n Simple_repeat Simple_repeat 1 95 0 7 1553 302 61 0 20 chr3 126990839 126990889 -32608894 + (CA)n Simple_repeat Simple_repeat 2 50 0 7 1553 1171 190 23 0 chr3 126991415 126991636 -32608147 + URR1A DNA MER1_type 1 226 0 7 1553 602 126 10 0 chr3 126991664 126991767 -32608016 + (TC)n Simple_repeat Simple_repeat 1 104 0 7 1553 1038 262 48 38 chr3 126991897 126992294 -32607489 - RMER5 LTR ERV1 0 534 134 7 1553 420 350 13 26 chr3 126992303 126992532 -32607251 + B4A SINE B4 8 233 -59 7 1553 1302 60 0 0 chr3 126992553 126992721 -32607062 + (TC)n Simple_repeat Simple_repeat 2 169 0 7 1553 1335 214 50 64 chr3 126992747 126993106 -32606677 + ORR1E LTR MaLR 4 357 -2 7 1553 238 257 0 28 chr3 126993131 126993203 -32606580 + (CA)n Simple_repeat Simple_repeat 1 70 0 7 1553 228 266 63 0 chr3 126993210 126993289 -32606494 - RMER5 LTR ERV1 -403 131 48 7 1553 233 156 209 45 chr3 126993746 126993813 -32605970 + B1_Mur2 SINE Alu 72 149 0 7 1553 357 250 40 0 chr3 126993866 126993942 -32605841 + RSINE1 SINE B4 2 80 -85 7 1553 423 0 0 0 chr3 126994029 126994076 -32605707 + (TA)n Simple_repeat Simple_repeat 1 47 0 7 1553 2715 134 29 0 chr3 126994745 126995156 -32604627 + Lx4A LINE L1 6636 7058 0 7 1553 1018 126 4 8 chr3 126995469 126995712 -32604071 + (TTGG)n Simple_repeat Simple_repeat 1 242 0 7 1553 465 267 25 8 chr3 126995745 126995866 -32603917 - B1F1 SINE Alu -25 124 2 7 1553 184 356 58 0 chr3 126997088 126997175 -32602608 + L3 LINE CR1 3535 3626 -863 7 1553 366 217 16 57 chr3 126997649 126997771 -32602012 - B4A SINE B4 -59 233 117 7 1553 513 58 0 0 chr3 126998294 126998363 -32601420 + (GA)n Simple_repeat Simple_repeat 1 69 0 7 1553 324 253 58 64 chr3 126999281 126999437 -32600346 + L1MA5 LINE L1 5840 5994 -306 7 1553 687 84 0 0 chr3 126999449 126999544 -32600239 + (TTTTC)n Simple_repeat Simple_repeat 4 98 0 7 1553 1312 165 20 29 chr3 126999552 126999879 -32599904 - Lx LINE L1 -18 6990 6343 7 1553 465 157 164 19 chr3 126999895 126999999 -32599784 + MTC LTR MaLR 1 119 -302 7 1553 222 37 0 0 chr3 127000000 127000027 -32599756 + (TCTG)n Simple_repeat Simple_repeat 2 28 0 1 1553 420 204 239 44 chr3 127000083 127000196 -32599587 - B1_Mur3 SINE Alu -13 136 2 2 1553 252 156 92 15 chr3 127000199 127000264 -32599519 - Lx7 LINE L1 -377 7319 7250 3 1553 1317 179 160 0 chr3 127000311 127000579 -32599204 + MTC LTR MaLR 111 421 0 4 1553 777 298 48 24 chr3 127000587 127000879 -32598904 + L1MA6 LINE L1 6001 6299 -1 5 1553 333 100 0 0 chr3 127001092 127001142 -32598641 + (TA)n Simple_repeat Simple_repeat 2 51 0 6 1553 360 247 10 10 chr3 127001158 127001256 -32598527 - L1MA8 LINE L1 -56 6235 6138 7 1553 2016 118 28 22 chr3 127001372 127001692 -32598091 + RLTRETN_Mm LTR ERVK 1 322 0 8 1553 742 208 66 71 chr3 127001692 127001889 -32597894 - B3 SINE B2 -19 197 2 9 1553 1020 40 0 0 chr3 127001908 127002033 -32597750 + (TTTC)n Simple_repeat Simple_repeat 4 128 0 1 1553 1101 97 0 0 chr3 127002033 127002167 -32597616 - B1_Mus2 SINE Alu -12 135 2 1 1553 233 171 0 0 chr3 127002446 127002487 -32597296 + U2 snRNA snRNA 2 42 -146 1 1553 302 191 175 0 chr3 127002550 127002613 -32597170 + BC1_Mm scRNA scRNA 2 75 -77 1 1553 543 187 0 0 chr3 127002696 127002803 -32596980 + (TA)n Simple_repeat Simple_repeat 1 107 0 1 1553 344 291 0 0 chr3 127005037 127005116 -32594667 + B4 SINE B4 2 80 -212 1 1553 576 295 214 3 chr3 127005121 127005442 -32594341 - MTD LTR MaLR -14 405 17 1 1553 852 231 26 16 chr3 127005428 127005617 -32594166 + B4 SINE B4 98 288 -4 1 1553 245 293 0 0 chr3 127005635 127005710 -32594073 + (CA)n Simple_repeat Simple_repeat 2 76 0 1 1553 21 0 0 0 chr3 127007168 127007189 -32592594 + AT_rich Low_complexity Low_complexity 1 21 0 1 1553 1204 19 5 54 chr3 127007558 127007781 -32592002 + (TAGA)n Simple_repeat Simple_repeat 1 212 0 1 1553 586 300 7 21 chr3 127007829 127007972 -32591811 - RSINE1 SINE B4 -19 146 6 2 1553 267 206 175 58 chr3 127008216 127008319 -32591464 + PB1D10 SINE Alu 2 116 -1 2 194 1014 193 109 0 chr3 127008705 127008907 -32590876 + ID_B1 SINE B4 1 224 0 2 1554 424 264 9 45 chr3 127008932 127009043 -32590740 + PB1D10 SINE Alu 6 112 -5 2 1554 279 304 206 8 chr3 127009043 127009058 -32590725 + B4 SINE B4 91 241 -51 2 1554 1219 241 41 15 chr3 127009081 127009398 -32590385 + Lx9 LINE L1 7000 7458 -186 2 1554 579 53 0 0 chr3 127009398 127009473 -32590310 + (TG)n Simple_repeat Simple_repeat 2 76 0 2 1554 1219 215 62 8 chr3 127009473 127009599 -32590184 + Lx9 LINE L1 7330 7479 -165 2 1554 1442 90 27 0 chr3 127009605 127009793 -32589990 + B2_Mm2 SINE B2 1 193 -2 2 1554 758 278 6 6 chr3 127009805 127009982 -32589801 + B3 SINE B2 2 178 -38 2 1554 259 270 30 0 chr3 127010006 127010100 -32589683 + L1MA4 LINE L1 5844 5928 -372 2 1554 551 224 241 0 chr3 127011340 127011514 -32588269 + ID_B1 SINE B4 7 222 -2 3 1554 281 275 14 0 chr3 127011666 127011735 -32588048 - ID4 SINE ID -4 79 10 3 1554 281 368 64 88 chr3 127012024 127012397 -32587386 + MER63D DNA AcHobo 1 364 -697 3 1554 656 137 128 15 chr3 127012696 127012829 -32586954 + B1_Mur4 SINE Alu 3 150 0 3 1554 288 56 74 0 chr3 127012829 127012883 -32586900 + (CAAAAA)n Simple_repeat Simple_repeat 5 62 0 3 1554 182 31 0 111 chr3 127013044 127013080 -32586703 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 3 1554 503 289 37 37 chr3 127013294 127013456 -32586327 + RSINE1 SINE B4 2 163 -2 3 1554 568 311 0 0 chr3 127013685 127013817 -32585966 - ID_B1 SINE B4 -8 216 85 3 1554 821 205 96 45 chr3 127014051 127014250 -32585533 - B3 SINE B2 -5 211 3 3 1554 21 0 0 0 chr3 127015854 127015875 -32583908 + AT_rich Low_complexity Low_complexity 1 21 0 3 1554 507 262 151 11 chr3 127016514 127016755 -32583028 - RMER15 LTR ERVL 0 575 275 4 1554 252 286 52 0 chr3 127016947 127017024 -32582759 - ID2 SINE ID -2 81 1 4 1554 1060 130 0 7 chr3 127017823 127017970 -32581813 + B1_Mus2 SINE Alu 1 146 -1 4 1554 311 154 0 15 chr3 127017978 127018044 -32581739 + GA-rich Low_complexity Low_complexity 2 66 0 4 1554 253 373 25 0 chr3 127018260 127018378 -32581405 + MIRb SINE MIR 112 232 -36 4 1554 228 370 89 39 chr3 127019529 127019709 -32580074 + MLT1I LTR MaLR 108 296 -115 4 1554 542 309 0 7 chr3 127020260 127020397 -32579386 - ID_B1 SINE B4 -7 217 82 4 1554 310 291 11 11 chr3 127021285 127021372 -32578411 + ID_B1 SINE B4 137 223 -1 4 1554 826 158 20 46 chr3 127021439 127021592 -32578191 + B1_Mur3 SINE Alu 1 149 0 4 1554 547 252 0 17 chr3 127021694 127021811 -32577972 - PB1D7 SINE Alu 0 120 6 4 1554 714 140 21 56 chr3 127021878 127022022 -32577761 + B2_Mm2 SINE B2 43 181 -14 5 1554 584 144 209 35 chr3 127022132 127022247 -32577536 + B1_Mur4 SINE Alu 1 135 -15 5 1554 180 0 0 0 chr3 127022249 127022269 -32577514 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 5 1554 1543 77 0 10 chr3 127022404 127022600 -32577183 - B2_Mm2 SINE B2 0 195 2 5 1554 729 268 127 24 chr3 127022608 127022979 -32576804 - Lx9 LINE L1 -2 7642 7234 5 1554 795 167 28 35 chr3 127023046 127023189 -32576594 - B1_Mur4 SINE Alu 0 150 9 5 1554 3725 18 2 0 chr3 127024207 127024602 -32575181 - MTA_Mm LTR MaLR 0 396 1 5 1554 742 252 0 25 chr3 127024649 127024812 -32574971 + RSINE1 SINE B4 4 162 -3 5 1554 243 61 0 0 chr3 127025132 127025165 -32574618 + (CA)n Simple_repeat Simple_repeat 1 33 0 5 1554 23 54 0 0 chr3 127025413 127025450 -32574333 + AT_rich Low_complexity Low_complexity 1 37 0 5 1554 362 221 0 0 chr3 127025524 127025592 -32574191 - ID_B1 SINE B4 -1 223 156 6 1554 257 258 191 0 chr3 127025592 127025613 -32574170 - PB1D10 SINE Alu -1 116 11 6 1554 303 306 58 22 chr3 127026059 127026196 -32573587 - L1M5 LINE L1 -2939 3207 3066 6 1554 686 208 0 0 chr3 127026199 127026329 -32573454 - B1_Mur4 SINE Alu -4 146 17 6 1554 331 323 66 44 chr3 127026229 127026365 -32573418 - B4 SINE B4 -88 204 66 6 1554 1024 100 0 13 chr3 127026505 127026657 -32573126 - L1Md_F2 LINE L1 0 6582 6433 6 1554 311 326 31 0 chr3 127027703 127027801 -32571982 - MLT1B LTR MaLR -46 344 244 6 1554 1197 89 0 0 chr3 127027823 127027991 -32571792 + (TCTCC)n Simple_repeat Simple_repeat 3 170 0 6 1554 439 319 26 36 chr3 127027993 127028185 -32571598 - MLT1B LTR MaLR -200 190 1 6 1554 494 274 62 0 chr3 127028396 127028509 -32571274 + ID_B1 SINE B4 100 219 -5 6 1554 21 0 0 0 chr3 127028755 127028776 -32571007 + AT_rich Low_complexity Low_complexity 1 21 0 6 1554 406 261 29 98 chr3 127028777 127028951 -32570832 - RSINE1 SINE B4 -2 163 2 7 1554 276 130 0 0 chr3 127029307 127029353 -32570430 + (CACCAT)n Simple_repeat Simple_repeat 6 51 0 7 1554 340 263 317 18 chr3 127029719 127029940 -32569843 + MER47A DNA MER2_type 7 293 -73 7 1554 637 322 75 49 chr3 127029966 127030315 -32569468 + ORR1E LTR MaLR 2 359 0 7 1554 1050 156 61 79 chr3 127030352 127030581 -32569202 + URR1B DNA MER1_type 1 225 0 7 1554 234 293 33 33 chr3 127030880 127030940 -32568843 + ID4 SINE ID 1 60 -23 7 1554 541 243 289 7 chr3 127032167 127032472 -32567311 - MTD LTR MaLR -15 404 18 7 1554 253 325 13 13 chr3 127032807 127032885 -32566898 + B4A SINE B4 95 172 -120 7 1554 371 299 0 40 chr3 127032815 127032916 -32566867 + PB1D7 SINE Alu 18 114 -6 7 1554 405 0 0 0 chr3 127032919 127032964 -32566819 + (TG)n Simple_repeat Simple_repeat 1 45 0 7 1554 525 362 13 0 chr3 127032965 127033114 -32566669 - B3A SINE B2 -47 151 1 8 1554 438 281 87 27 chr3 127033687 127033837 -32565946 + RSINE1 SINE B4 3 161 -4 8 1554 393 117 0 0 chr3 127033851 127033911 -32565872 + (TAGA)n Simple_repeat Simple_repeat 3 62 0 8 1554 2128 164 33 8 chr3 127034323 127034691 -32565092 + MTC LTR MaLR 45 421 0 8 1554 223 392 48 0 chr3 127034952 127035118 -32564665 - MIR3 SINE MIR -34 174 1 8 1554 353 205 121 33 chr3 127035357 127035448 -32564335 + ID_B1 SINE B4 92 190 -34 8 1554 347 190 35 166 chr3 127035364 127035509 -32564274 + B1F1 SINE Alu 20 145 -4 8 1554 31 58 0 0 chr3 127035740 127035792 -32563991 + AT_rich Low_complexity Low_complexity 1 52 0 8 1554 360 0 0 0 chr3 127036161 127036201 -32563582 + (TG)n Simple_repeat Simple_repeat 2 41 0 8 1554 1883 148 54 54 chr3 127036372 127036721 -32563062 + ORR1B1 LTR MaLR 46 394 0 8 1554 250 261 0 80 chr3 127036783 127036858 -32562925 + PB1D7 SINE Alu 9 77 -43 9 1554 28 48 0 0 chr3 127036935 127036977 -32562806 + AT_rich Low_complexity Low_complexity 1 42 0 9 1554 498 232 0 0 chr3 127037021 127037116 -32562667 - PB1D10 SINE Alu -6 111 17 9 1554 22 0 0 0 chr3 127037133 127037155 -32562628 + AT_rich Low_complexity Low_complexity 1 22 0 9 1554 185 184 111 93 chr3 127038085 127038139 -32561644 - L4 LINE RTE -1888 141 87 9 1554 500 224 19 0 chr3 127038600 127038707 -32561076 + PB1D10 SINE Alu 1 109 -8 9 1554 269 222 0 0 chr3 127039645 127039699 -32560084 - B4A SINE B4 -238 54 1 9 1554 233 287 209 22 chr3 127043013 127043081 -32556702 - Lx8 LINE L1 -52 7421 7337 9 1554 423 0 0 0 chr3 127043081 127043128 -32556655 + (TTTTA)n Simple_repeat Simple_repeat 4 50 0 9 1554 233 287 209 22 chr3 127043128 127043198 -32556585 - Lx8 LINE L1 -137 7336 7258 9 1554 336 265 67 29 chr3 127043214 127043319 -32556464 - B4 SINE B4 -167 125 17 9 1554 689 219 58 189 chr3 127043422 127043544 -32556239 - URR1B DNA MER1_type 0 225 108 1 1554 1240 126 20 25 chr3 127043544 127043740 -32556043 + B2_Mm2 SINE B2 1 195 0 1 1554 689 219 58 189 chr3 127043740 127043876 -32555907 - URR1B DNA MER1_type -118 107 1 1 1554 270 313 73 15 chr3 127044576 127044712 -32555071 + MIRc SINE MIR 9 152 -116 1 1554 226 241 49 4 chr3 127044788 127044880 -32554903 - MIRc SINE MIR -13 249 155 1 1554 1931 138 0 63 chr3 127045121 127045454 -32554329 - ORR1A3 LTR MaLR 0 326 15 1 1554 442 364 57 37 chr3 127045678 127045923 -32553860 + LTR33 LTR ERVL 33 282 -233 1 1554 24 32 0 0 chr3 127046196 127046227 -32553556 + AT_rich Low_complexity Low_complexity 1 31 0 1 1554 802 218 338 7 chr3 127046624 127046905 -32552878 + ORR1D1 LTR MaLR 1 374 0 1 1554 378 121 0 29 chr3 127046917 127046985 -32552798 - Lx8 LINE L1 -5 7468 7403 1 1554 635 171 143 5 chr3 127047337 127047489 -32552294 - Lx3B LINE L1 -2 7007 6818 1 1554 1876 152 82 0 chr3 127047668 127048023 -32551760 + Lx9 LINE L1 7260 7643 -1 1 1554 407 328 47 47 chr3 127048140 127048268 -32551515 + MER5A DNA MER1_type 19 146 -43 1 1554 245 232 18 18 chr3 127049771 127049828 -32549955 + ID SINE ID 4 60 -164 1 1554 4188 138 64 15 chr3 127050037 127050384 -32549399 + RMER6D LTR ERVK 1 369 -351 1 1554 441 0 0 0 chr3 127050384 127050433 -32549350 + (TG)n Simple_repeat Simple_repeat 1 49 0 1 1554 4188 138 64 15 chr3 127050433 127050771 -32549012 + RMER6D LTR ERVK 370 720 0 1 1554 1117 197 209 65 chr3 127051494 127051867 -32547916 - MTD LTR MaLR 0 379 1 1 1554 266 295 114 0 chr3 127051986 127052091 -32547692 + MIRm SINE MIR 160 276 0 1 1554 401 333 110 34 chr3 127052394 127052658 -32547125 + B4A SINE B4 5 288 -4 1 1554 401 329 29 7 chr3 127052713 127052851 -32546932 + B4A SINE B4 91 231 -61 1 1554 388 315 54 54 chr3 127054000 127054295 -32545488 + L1MC3 LINE L1 7218 7512 -273 1 1554 337 316 84 42 chr3 127054352 127054471 -32545312 + RSINE1 SINE B4 34 157 -8 1 1554 1512 221 92 48 chr3 127054647 127055047 -32544736 - MTD LTR MaLR 0 419 2 1 1554 1135 180 0 4 chr3 127055852 127056092 -32543691 - MTC LTR MaLR -2 417 120 1 1554 1992 134 235 31 chr3 127056092 127056509 -32543274 + Lx3B LINE L1 6471 6972 -1 1 1554 7659 90 25 10 chr3 127056506 127057534 -32542249 + Lx LINE L1 5487 6518 -136 1 1554 186 43 0 0 chr3 127057534 127057557 -32542226 + (TGGG)n Simple_repeat Simple_repeat 3 25 0 1 1554 7659 83 26 11 chr3 127057557 127057671 -32542112 + Lx LINE L1 6519 6643 -11 1 1554 447 169 146 0 chr3 127057732 127057821 -32541962 - MTC LTR MaLR -301 120 19 1 1554 612 148 24 32 chr3 127057825 127057951 -32541832 - RLTR9C LTR ERVK 0 393 269 1 1554 523 248 78 0 chr3 127059090 127059231 -32540552 - RSINE1 SINE B4 -11 154 3 1 1554 1176 68 0 13 chr3 127060525 127060675 -32539108 + B1_Mus1 SINE Alu 1 148 0 1 1554 483 100 33 0 chr3 127060701 127060742 -32539041 + (GA)n Simple_repeat Simple_repeat 2 42 0 1 1554 1380 62 0 0 chr3 127060742 127060921 -32538862 + (GGAGA)n Simple_repeat Simple_repeat 2 180 0 1 1554 483 100 33 0 chr3 127060921 127060969 -32538814 + (GA)n Simple_repeat Simple_repeat 1 51 0 1 1554 338 325 180 17 chr3 127061038 127061210 -32538573 + B4A SINE B4 4 203 -89 1 1554 396 342 32 27 chr3 127061179 127061365 -32538418 + ID_B1 SINE B4 17 203 -21 1 1554 239 289 0 57 chr3 127061869 127061957 -32537826 - B3A SINE B2 0 198 116 1 1554 330 26 0 0 chr3 127062374 127062413 -32537370 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 1 1554 1141 69 7 0 chr3 127062417 127062562 -32537221 - B1_Mm SINE Alu 0 147 2 1 1554 442 175 27 72 chr3 127063170 127063281 -32536502 - B1_Mur2 SINE Alu -2 147 42 1 1554 366 127 0 0 chr3 127063369 127063424 -32536359 - PB1D9 SINE Alu -65 55 1 1 1554 1026 115 0 0 chr3 127063631 127063787 -32535996 + (GGAA)n Simple_repeat Simple_repeat 4 159 0 1 1554 921 134 10 38 chr3 127065232 127065259 -32534524 + B1_Mur4 SINE Alu 19 164 -147 1 1554 365 220 30 99 chr3 127065259 127065390 -32534393 + MT2B LTR ERVL 157 278 -323 1 1554 921 134 10 38 chr3 127065390 127065413 -32534370 + B1_Mur4 SINE Alu 165 303 -8 1 1554 1582 267 109 32 chr3 127065449 127066038 -32533745 + Lx8 LINE L1 6840 7473 0 1 1554 503 261 23 58 chr3 127067087 127067258 -32532525 + RSINE1 SINE B4 1 165 0 1 1554 535 130 20 0 chr3 127067260 127067360 -32532423 + (TA)n Simple_repeat Simple_repeat 2 103 0 1 1554 387 105 0 0 chr3 127067412 127067469 -32532314 + B1_Mus2 SINE Alu 59 115 -32 1 1554 650 232 81 35 chr3 127067689 127067886 -32531897 - B3 SINE B2 -6 210 5 1 1554 180 219 0 0 chr3 127068851 127068892 -32530891 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 1554 306 341 26 92 chr3 127069265 127069400 -32530383 - MLT1F LTR MaLR 0 548 429 1 1554 207 0 0 0 chr3 127069400 127069423 -32530360 + (GCTTG)n Simple_repeat Simple_repeat 4 26 0 1 1554 306 341 26 92 chr3 127069423 127069516 -32530267 - MLT1F LTR MaLR -120 428 335 1 1554 713 183 0 0 chr3 127069634 127069754 -32530029 + B1F SINE Alu 1 120 -29 1 1554 249 33 0 0 chr3 127069785 127069815 -32529968 + (TAA)n Simple_repeat Simple_repeat 2 31 0 1 1554 591 219 0 0 chr3 127070199 127070313 -32529470 + B3A SINE B2 3 116 -82 1 1554 387 0 0 0 chr3 127070361 127070404 -32529379 + (CA)n Simple_repeat Simple_repeat 1 43 0 1 1554 24 32 0 0 chr3 127070412 127070443 -32529340 + AT_rich Low_complexity Low_complexity 1 31 0 1 1554 259 307 59 34 chr3 127070775 127070893 -32528890 + B1F2 SINE Alu 1 121 -28 1 1554 281 340 67 80 chr3 127071103 127071253 -32528530 + B4 SINE B4 76 223 -69 1 1554 606 242 23 8 chr3 127071121 127071254 -32528529 + B1_Mur1 SINE Alu 13 147 -2 1 1554 620 243 112 21 chr3 127071491 127071812 -32527971 + L1M4 LINE L1 2705 3057 -3083 1 1554 195 259 0 0 chr3 127072227 127072285 -32527498 + A-rich Low_complexity Low_complexity 3 60 0 1 1554 674 296 78 21 chr3 127072397 127072855 -32526928 + L1M4 LINE L1 3256 3743 -2400 1 1554 244 294 38 29 chr3 127072925 127073030 -32526753 - Tigger5 DNA MER2_type -2272 134 29 1 1554 574 246 191 27 chr3 127073059 127073426 -32526357 + L1M4 LINE L1 3772 4198 -1948 1 1554 188 35 35 0 chr3 127073471 127073500 -32526283 + (TTTG)n Simple_repeat Simple_repeat 1 30 0 1 1554 1102 51 0 53 chr3 127073500 127073688 -32526095 + (GTTTG)n Simple_repeat Simple_repeat 1 178 0 1 1554 279 0 0 0 chr3 127073708 127073739 -32526044 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1 1554 436 130 109 0 chr3 127073744 127073836 -32525947 - B1_Mur4 SINE Alu -15 135 34 1 1554 359 310 18 9 chr3 127073857 127073971 -32525812 - PB1D7 SINE Alu -2 118 4 1 1554 615 218 24 0 chr3 127074306 127074430 -32525353 - B3 SINE B2 -10 206 80 1 1554 429 109 0 0 chr3 127074506 127074570 -32525213 + (TAAA)n Simple_repeat Simple_repeat 3 66 0 1 1554 900 196 10 21 chr3 127074587 127074780 -32525003 + B2_Mm2 SINE B2 5 195 0 1 1554 263 256 32 35 chr3 127074824 127074927 -32524856 - B3A SINE B2 -2 214 115 1 1554 677 234 23 40 chr3 127075099 127075273 -32524510 + B3A SINE B2 1 171 -27 1 1554 243 0 0 0 chr3 127075275 127075302 -32524481 + (CA)n Simple_repeat Simple_repeat 1 27 0 1 1554 27 29 0 0 chr3 127075369 127075403 -32524380 + AT_rich Low_complexity Low_complexity 1 34 0 1 1554 468 290 15 8 chr3 127075875 127076007 -32523776 - ID_B1 SINE B4 -8 216 84 1 1554 698 248 0 20 chr3 127076042 127076194 -32523589 + B1_Mur2 SINE Alu 1 149 0 1 1554 408 359 7 7 chr3 127076329 127076475 -32523308 + Lx8 LINE L1 6204 6349 -1124 1 1554 447 68 0 0 chr3 127076483 127076542 -32523241 + (TC)n Simple_repeat Simple_repeat 2 60 0 1 1554 513 0 0 0 chr3 127076542 127076599 -32523184 + (CA)n Simple_repeat Simple_repeat 1 57 0 1 1554 3284 263 92 20 chr3 127076615 127077529 -32522254 + Lx8 LINE L1 6349 7347 -126 1 1554 780 168 23 0 chr3 127077529 127077660 -32522123 + B1_Mur4 SINE Alu 1 134 -16 1 1554 702 0 0 0 chr3 127077660 127077738 -32522045 + (GGAA)n Simple_repeat Simple_repeat 1 78 0 1 1554 3284 263 92 20 chr3 127077738 127077871 -32521912 + Lx8 LINE L1 7348 7471 -2 1 1554 657 121 38 0 chr3 127077935 127078092 -32521691 + (TCTG)n Simple_repeat Simple_repeat 2 164 0 1 1554 255 277 10 21 chr3 127079606 127079702 -32520081 - MIR3 SINE MIR -21 187 93 1 1554 783 164 71 0 chr3 127080548 127080688 -32519095 + B1_Mur4 SINE Alu 1 150 0 1 1554 495 0 0 0 chr3 127080731 127080786 -32518997 + (TG)n Simple_repeat Simple_repeat 2 56 0 1 1554 368 312 12 124 chr3 127080802 127080963 -32518820 - RSINE1 SINE B4 -19 146 4 1 1554 287 312 129 41 chr3 127081026 127081220 -32518563 + LTR82B Low_complexity ERVL 598 808 -22 1 1554 577 245 42 61 chr3 127081803 127081968 -32517815 + B3A SINE B2 17 178 -20 1 1554 189 107 0 0 chr3 127082003 127082031 -32517752 + (TA)n Simple_repeat Simple_repeat 1 28 0 1 1554 264 30 0 0 chr3 127082031 127082063 -32517720 + (CA)n Simple_repeat Simple_repeat 2 34 0 1 1554 1754 164 8 77 chr3 127082411 127082793 -32516990 + ORR1B1 LTR MaLR 1 387 -7 1 1554 618 204 35 14 chr3 127082900 127083044 -32516739 + B1F1 SINE Alu 3 149 0 1 1554 216 0 0 0 chr3 127083044 127083068 -32516715 + (CAAAAA)n Simple_repeat Simple_repeat 6 29 0 1 1554 941 172 131 0 chr3 127083119 127083317 -32516466 - URR1A DNA MER1_type -1 225 2 1 1554 2825 76 47 3 chr3 127084300 127084683 -32515100 - MTB LTR MaLR 0 400 1 1 1554 2416 82 59 19 chr3 127084926 127085297 -32514486 + Lx LINE L1 6268 6653 -1 1 1554 1217 109 23 0 chr3 127085310 127085484 -32514299 + B2_Mm1t SINE B2 2 179 -14 1 1554 210 143 0 0 chr3 127085487 127085522 -32514261 + (TA)n Simple_repeat Simple_repeat 2 36 0 1 1554 239 79 26 0 chr3 127085524 127085562 -32514221 + (GAAAA)n Simple_repeat Simple_repeat 3 41 0 1 1554 321 187 0 0 chr3 127085777 127085852 -32513931 + T-rich Low_complexity Low_complexity 1 75 0 1 1554 916 153 14 14 chr3 127085855 127086001 -32513782 - B1_Mus2 SINE Alu -1 146 1 1 1554 1556 207 98 5 chr3 127086091 127086460 -32513323 + MTD LTR MaLR 3 405 -14 2 1554 562 231 37 0 chr3 127086644 127086752 -32513031 + PB1D9 SINE Alu 3 114 -6 2 1554 282 315 214 8 chr3 127086752 127086775 -32513008 + B4A SINE B4 88 245 -47 2 1554 967 109 6 6 chr3 127086804 127086961 -32512822 + (GAA)n Simple_repeat Simple_repeat 2 158 0 2 1554 737 204 13 13 chr3 127087935 127087946 -32511837 - B1_Mur3 SINE Alu 0 149 139 2 1554 293 0 0 26 chr3 127087946 127087984 -32511799 + (TTTTG)n Simple_repeat Simple_repeat 2 38 0 2 1554 737 204 13 13 chr3 127087984 127088121 -32511662 - B1_Mur3 SINE Alu -11 138 1 2 1554 1161 49 0 0 chr3 127088378 127088520 -32511263 + B1_Mus1 SINE Alu 2 143 -5 2 1554 828 57 0 0 chr3 127088522 127088628 -32511155 + (GGA)n Simple_repeat Simple_repeat 3 108 0 2 1554 1196 144 119 0 chr3 127088702 127088904 -32510879 - URR1A DNA MER1_type 0 226 1 2 1554 1058 294 31 87 chr3 127089005 127089546 -32510237 - MLT2B2 LTR ERVL -4 511 1 2 1554 180 0 0 0 chr3 127089816 127089836 -32509947 + (GA)n Simple_repeat Simple_repeat 1 20 0 2 1554 881 184 0 13 chr3 127090803 127090952 -32508831 + B1_Mur3 SINE Alu 3 149 0 2 1554 194 33 67 0 chr3 127090952 127090982 -32508801 + (CAAAAA)n Simple_repeat Simple_repeat 4 35 0 2 1554 345 236 0 0 chr3 127091088 127091160 -32508623 - PB1D10 SINE Alu -5 112 41 2 1554 529 315 0 12 chr3 127091204 127091371 -32508412 - RSINE1 SINE B4 0 165 1 2 1554 21 0 0 0 chr3 127091742 127091763 -32508020 + AT_rich Low_complexity Low_complexity 1 21 0 2 1554 541 257 68 148 chr3 127092244 127092279 -32507504 + ID SINE ID 6 36 -188 2 1554 2456 87 12 0 chr3 127092279 127092602 -32507181 - ORR1A2 LTR MaLR 0 327 1 2 1554 541 257 68 148 chr3 127092602 127092803 -32506980 + ID_B1 SINE B4 37 223 -1 2 1554 279 262 0 0 chr3 127092816 127092877 -32506906 + PB1D9 SINE Alu 1 61 -59 2 1554 186 43 0 0 chr3 127092955 127092978 -32506805 + (AGGGGG)n Simple_repeat Simple_repeat 5 27 0 2 1554 1995 164 73 8 chr3 127093326 127093708 -32506075 - MTB_Mm LTR MaLR 0 407 1 2 1554 729 226 0 0 chr3 127095099 127095236 -32504547 + B1_Mur2 SINE Alu 6 142 -7 2 1554 339 25 0 0 chr3 127096021 127096061 -32503722 + (TG)n Simple_repeat Simple_repeat 2 41 0 2 1554 1057 178 11 0 chr3 127096096 127096276 -32503507 + B3 SINE B2 2 183 -33 2 1554 414 0 0 0 chr3 127096463 127096509 -32503274 + (TG)n Simple_repeat Simple_repeat 2 47 0 2 1554 309 26 0 0 chr3 127096636 127096674 -32503109 + (CA)n Simple_repeat Simple_repeat 2 39 0 2 1554 1257 34 0 0 chr3 127096822 127096968 -32502815 - B1_Mm SINE Alu 0 147 2 2 1554 378 235 25 0 chr3 127097256 127097337 -32502446 + MLT1D LTR MaLR 20 102 -403 2 1554 302 258 0 0 chr3 127097530 127097627 -32502156 + T-rich Low_complexity Low_complexity 1 97 0 2 1554 519 270 0 33 chr3 127097628 127097781 -32502002 - B1_Mur2 SINE Alu -1 148 1 2 1554 303 49 0 0 chr3 127097817 127097858 -32501925 + (GA)n Simple_repeat Simple_repeat 1 41 0 2 1554 464 353 55 9 chr3 127097924 127098253 -32501530 + MT2A LTR ERVL 190 533 0 2 1554 22 0 0 0 chr3 127098510 127098532 -32501251 + AT_rich Low_complexity Low_complexity 1 22 0 2 1554 848 143 43 18 chr3 127099475 127099639 -32500144 + URR1A DNA MER1_type 59 226 0 2 1554 524 220 17 0 chr3 127099925 127100043 -32499740 + Lx9 LINE L1 7344 7463 -181 2 1554 22 35 0 0 chr3 127100137 127100166 -32499617 + AT_rich Low_complexity Low_complexity 1 29 0 2 1554 374 238 12 12 chr3 127100310 127100395 -32499388 - PB1D7 SINE Alu -7 113 29 2 1554 427 200 0 12 chr3 127100434 127100515 -32499268 + B3A SINE B2 1 80 -118 2 1554 22 35 0 0 chr3 127100532 127100561 -32499222 + AT_rich Low_complexity Low_complexity 1 29 0 2 1554 353 219 96 0 chr3 127100606 127100679 -32499104 - ID4_ SINE ID 0 83 4 2 1554 225 210 45 75 chr3 127101686 127101753 -32498030 - MamGypLTR3 LTR Gypsy -175 664 600 2 1554 1000 163 59 16 chr3 127101962 127102149 -32497634 + B3A SINE B2 1 195 -3 2 1554 595 256 38 22 chr3 127102226 127102410 -32497373 - B3 SINE B2 -2 214 28 2 1554 494 218 9 26 chr3 127102451 127102564 -32497219 + B1_Mur1 SINE Alu 33 143 -6 2 1554 551 182 46 51 chr3 127102694 127102859 -32496924 + ORR1B1 LTR MaLR 1 208 -186 2 1554 410 165 0 24 chr3 127102831 127102915 -32496868 + ORR1B1 LTR MaLR 92 236 -158 2 1554 319 21 42 0 chr3 127102952 127103000 -32496783 + (TTTTG)n Simple_repeat Simple_repeat 2 51 0 2 1554 1107 66 0 0 chr3 127103000 127103137 -32496646 - B1_Mus1 SINE Alu -10 138 2 2 1554 1061 122 17 0 chr3 127103137 127103309 -32496474 + ORR1A4 LTR MaLR 147 321 -8 2 1554 496 298 6 47 chr3 127103377 127103546 -32496237 + RSINE1 SINE B4 4 165 0 2 1554 486 0 0 0 chr3 127103558 127103612 -32496171 + (TAAA)n Simple_repeat Simple_repeat 3 56 0 2 1554 231 146 0 0 chr3 127103644 127103682 -32496101 + (CA)n Simple_repeat Simple_repeat 1 38 0 2 1554 414 0 0 0 chr3 127103682 127103728 -32496055 + (TAAA)n Simple_repeat Simple_repeat 3 48 0 2 1554 231 146 0 0 chr3 127103728 127103737 -32496046 + (CA)n Simple_repeat Simple_repeat 1 9 0 2 1554 207 88 0 0 chr3 127105287 127105321 -32494462 + (TTGG)n Simple_repeat Simple_repeat 2 35 0 2 1554 1140 58 0 0 chr3 127105326 127105465 -32494318 - B1_Mus2 SINE Alu -7 140 2 2 1554 361 172 0 0 chr3 127105474 127105538 -32494245 - PB1D10 SINE Alu -6 111 48 2 1554 929 149 0 7 chr3 127105598 127105740 -32494043 - B1_Mus2 SINE Alu -6 141 1 2 1554 195 42 0 0 chr3 127106501 127106525 -32493258 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 2 1554 1062 88 6 6 chr3 127106525 127106685 -32493098 - B2_Mm2 SINE B2 -33 162 3 2 1554 1142 107 0 6 chr3 127106886 127107064 -32492719 + (GGAA)n Simple_repeat Simple_repeat 3 179 0 2 1554 984 164 0 0 chr3 127107082 127107259 -32492524 + GA-rich Low_complexity Low_complexity 2 178 0 2 1554 500 165 0 76 chr3 127108253 127108371 -32491412 - B1_Mur1 SINE Alu 0 149 41 2 1554 219 203 266 0 chr3 127108408 127108472 -32491311 + ID4_ SINE ID 2 82 -1 2 1554 360 59 0 0 chr3 127108912 127108963 -32490820 + (TTTG)n Simple_repeat Simple_repeat 3 53 0 2 1554 801 113 104 8 chr3 127108964 127109098 -32490685 - B1_Mur3 SINE Alu -1 148 2 2 1554 214 191 24 0 chr3 127109100 127109142 -32490641 + CT-rich Low_complexity Low_complexity 1 43 0 2 1554 189 0 0 0 chr3 127109169 127109190 -32490593 + (T)n Simple_repeat Simple_repeat 1 21 0 2 1554 1123 82 7 0 chr3 127109190 127109336 -32490447 - B1_Mus1 SINE Alu 0 148 2 2 1554 576 242 0 80 chr3 127109760 127109922 -32489861 - B1_Mur1 SINE Alu 0 149 1 2 1554 378 0 0 0 chr3 127110265 127110307 -32489476 + (TA)n Simple_repeat Simple_repeat 2 43 0 2 1554 210 150 0 0 chr3 127112329 127112369 -32487414 + (TG)n Simple_repeat Simple_repeat 1 40 0 2 1554 346 271 79 0 chr3 127112683 127112823 -32486960 - B4A SINE B4 -141 151 1 2 1554 464 311 0 0 chr3 127112831 127112950 -32486833 - PB1D7 SINE Alu -1 119 1 2 1554 180 0 0 0 chr3 127113083 127113103 -32486680 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 2 1554 650 143 142 8 chr3 127113105 127113225 -32486558 - B1_Mur4 SINE Alu -13 137 2 2 1554 576 275 75 50 chr3 127113872 127114174 -32485609 + Lx7 LINE L1 5629 5903 -1793 2 1554 450 0 0 0 chr3 127114179 127114229 -32485554 + (TG)n Simple_repeat Simple_repeat 2 51 0 2 1554 25 31 0 0 chr3 127114444 127114476 -32485307 + AT_rich Low_complexity Low_complexity 1 32 0 2 1554 319 298 118 20 chr3 127114634 127114829 -32484954 + MER21B LTR ERV1 100 313 -550 2 1554 548 223 43 0 chr3 127114835 127114974 -32484809 + B1F SINE Alu 5 149 0 2 1554 180 0 0 0 chr3 127114978 127114998 -32484785 + (CAA)n Simple_repeat Simple_repeat 2 21 0 2 1554 512 13 52 0 chr3 127115144 127115221 -32484562 + (TG)n Simple_repeat Simple_repeat 1 81 0 2 1554 692 221 7 35 chr3 127115239 127115384 -32484399 - RSINE1 SINE B4 -24 141 1 2 1554 643 249 171 10 chr3 127115384 127115583 -32484200 - B4A SINE B4 -61 231 1 2 1554 676 331 54 29 chr3 127115586 127115866 -32483917 + MER21B LTR ERV1 464 750 -113 2 1554 227 181 42 17 chr3 127116096 127116214 -32483569 + (TA)n Simple_repeat Simple_repeat 2 122 0 2 1554 246 246 37 158 chr3 127116318 127116378 -32483405 - ID4_ SINE ID -1 82 32 2 1554 1359 97 16 0 chr3 127116378 127116564 -32483219 + B2_Mm2 SINE B2 2 190 -5 2 1554 246 246 37 158 chr3 127116564 127116585 -32483198 - ID4_ SINE ID -52 31 11 2 1554 979 217 29 0 chr3 127116620 127116827 -32482956 - B3 SINE B2 -3 213 1 2 1554 355 23 0 0 chr3 127117147 127117191 -32482592 + RMER1B Other Other 1011 1054 -12 2 1554 660 224 28 0 chr3 127117522 127117665 -32482118 - B3A SINE B2 -38 160 14 2 1554 24 0 0 0 chr3 127117679 127117703 -32482080 + AT_rich Low_complexity Low_complexity 1 24 0 2 1554 1840 118 146 18 chr3 127117871 127118206 -32481577 - ORR1C1 LTR MaLR 0 378 1 2 1554 2452 95 3 3 chr3 127118758 127119085 -32480698 - ORR1A2 LTR MaLR 0 327 1 2 1554 279 324 44 27 chr3 127119245 127119433 -32480350 + L1MC5 LINE L1 6706 6877 -1084 2 1554 561 259 111 44 chr3 127119659 127119930 -32479853 - B4A SINE B4 -2 290 2 2 1554 253 226 81 23 chr3 127120073 127120159 -32479624 - MLT1G1 LTR MaLR -488 91 1 2 1554 1480 63 0 21 chr3 127120460 127120654 -32479129 + B2_Mm2 SINE B2 3 192 -3 2 1554 722 268 35 25 chr3 127120936 127121139 -32478644 - B3 SINE B2 -11 205 1 2 1554 772 200 0 28 chr3 127121323 127121573 -32478210 + GA-rich Low_complexity Low_complexity 1 243 0 2 1554 2383 136 38 15 chr3 127121890 127122285 -32477498 - MTB_Mm LTR MaLR 0 407 4 2 1554 428 243 208 2 chr3 127122596 127122755 -32477028 + B3 SINE B2 6 198 0 3 1554 835 120 0 8 chr3 127122769 127122887 -32476896 + B1_Mus1 SINE Alu 23 140 -8 3 1554 186 103 0 0 chr3 127122887 127122916 -32476867 + (CAA)n Simple_repeat Simple_repeat 2 30 0 3 1554 182 337 0 11 chr3 127123962 127124052 -32475731 - L3 LINE CR1 -2275 2214 2126 3 1554 851 305 58 24 chr3 127124544 127124920 -32474863 + Lx9 LINE L1 6970 7358 -286 3 1554 1253 52 0 11 chr3 127125434 127125608 -32474175 + B2_Mm2 SINE B2 4 175 -20 3 1554 288 280 95 34 chr3 127125721 127125869 -32473914 - MLT1D LTR MaLR -325 180 24 3 1554 1635 32 0 16 chr3 127126188 127126381 -32473402 + B2_Mm1a SINE B2 4 193 0 3 1554 918 150 249 0 chr3 127126719 127126892 -32472891 + B3 SINE B2 1 216 0 3 1554 774 104 130 15 chr3 127126917 127127064 -32472719 + B2_Mm1t SINE B2 15 179 -14 3 1554 328 123 14 18 chr3 127127110 127127176 -32472607 + B2_Mm2 SINE B2 46 116 -82 3 1554 268 215 162 12 chr3 127127254 127127334 -32472449 + B1_Mur2 SINE Alu 8 99 -50 3 1554 2087 134 21 72 chr3 127127426 127127750 -32472033 + ORR1B2 LTR MaLR 1 321 -46 3 1554 1489 68 16 0 chr3 127127750 127127940 -32471843 + B2_Mm2 SINE B2 1 193 -2 3 1554 2087 134 21 72 chr3 127127940 127128002 -32471781 + ORR1B2 LTR MaLR 322 367 0 3 1554 1283 116 10 16 chr3 127128850 127129043 -32470740 + B2_Mm1t SINE B2 2 193 0 3 1554 519 189 27 7 chr3 127129050 127129199 -32470584 + RMER17B LTR ERVK 309 460 -498 3 1554 233 263 74 0 chr3 127129539 127129573 -32470210 - MER105 DNA DNA -8 196 161 3 1554 369 0 0 0 chr3 127129573 127129614 -32470169 + (TAA)n Simple_repeat Simple_repeat 2 42 0 3 1554 233 263 74 0 chr3 127129614 127129674 -32470109 - MER105 DNA DNA -44 160 97 3 1554 342 138 0 0 chr3 127130073 127130131 -32469652 + (TTTC)n Simple_repeat Simple_repeat 1 58 0 3 1554 777 148 31 11 chr3 127130182 127130359 -32469424 - B2_Mm2 SINE B2 -29 187 3 3 1554 1043 226 0 23 chr3 127130410 127130627 -32469156 - B3 SINE B2 0 216 5 3 1554 483 18 0 0 chr3 127130644 127130700 -32469083 + (CA)n Simple_repeat Simple_repeat 2 57 0 3 1554 494 227 0 68 chr3 127130717 127130835 -32468948 - B1_Mur1 SINE Alu -3 146 37 3 1554 691 220 90 28 chr3 127130829 127131007 -32468776 - MTC LTR MaLR -232 189 1 3 1554 330 309 36 0 chr3 127131067 127131177 -32468606 - B3A SINE B2 -76 122 9 3 1554 234 300 0 36 chr3 127131482 127131565 -32468218 + B1F SINE Alu 46 125 -24 3 1554 748 154 6 31 chr3 127131573 127131734 -32468049 + B2_Mm2 SINE B2 35 191 -4 3 1554 523 318 59 83 chr3 127131735 127131913 -32467870 + L1MB3 LINE L1 5592 5763 -420 3 1554 709 226 84 15 chr3 127131913 127132115 -32467668 + B3 SINE B2 1 216 0 3 1554 523 318 59 83 chr3 127132115 127132310 -32467473 + L1MB3 LINE L1 5764 5956 -227 3 1554 221 182 0 18 chr3 127132379 127132435 -32467348 + GA-rich Low_complexity Low_complexity 1 55 0 3 1554 266 347 31 0 chr3 127132699 127132797 -32466986 - MIRb SINE MIR -112 156 56 3 1554 1081 62 26 46 chr3 127133304 127133455 -32466328 + B1_Mus1 SINE Alu 1 148 0 3 1554 416 67 17 0 chr3 127133455 127133515 -32466268 + (GAAA)n Simple_repeat Simple_repeat 4 64 0 3 1554 1008 225 148 49 chr3 127133611 127133976 -32465807 - MTD LTR MaLR -12 407 7 3 1554 449 270 0 9 chr3 127134274 127134386 -32465397 + ID_B1 SINE B4 107 217 -7 3 1554 1158 68 0 0 chr3 127134517 127134664 -32465119 - B1_Mm SINE Alu 0 147 1 3 1554 476 242 0 55 chr3 127135049 127135157 -32464626 + B3 SINE B2 94 200 -16 3 1554 197 0 71 0 chr3 127135157 127135185 -32464598 + (TAAAA)n Simple_repeat Simple_repeat 5 34 0 3 1554 476 242 0 55 chr3 127135185 127135203 -32464580 + B3 SINE B2 201 213 -3 3 1554 180 0 0 0 chr3 127135885 127135905 -32463878 + (TA)n Simple_repeat Simple_repeat 2 21 0 3 1554 270 0 0 0 chr3 127135954 127135984 -32463799 + (TA)n Simple_repeat Simple_repeat 1 30 0 3 1554 492 313 32 32 chr3 127136216 127136401 -32463382 + Lx8 LINE L1 7157 7341 -132 3 1554 381 93 0 0 chr3 127136658 127136712 -32463071 + (TC)n Simple_repeat Simple_repeat 1 54 0 3 1554 324 234 214 45 chr3 127136876 127136988 -32462795 - ID_B1 SINE B4 0 224 94 3 1554 194 0 39 0 chr3 127137012 127137038 -32462745 + (TTTTG)n Simple_repeat Simple_repeat 4 30 0 3 1554 499 208 19 19 chr3 127137038 127137146 -32462637 - PB1D7 SINE Alu -12 108 1 3 1554 1407 55 28 0 chr3 127137499 127137681 -32462102 - B2_Mm1t SINE B2 -5 188 2 3 1554 198 0 0 0 chr3 127137990 127138012 -32461771 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 3 1554 1361 80 6 0 chr3 127138014 127138190 -32461593 - B2_Mm1a SINE B2 -15 178 2 3 1554 756 248 24 43 chr3 127138190 127138397 -32461386 + B3 SINE B2 14 216 0 3 1554 284 342 6 43 chr3 127138482 127138644 -32461139 - RSINE1 SINE B4 -9 156 1 3 1554 447 19 0 0 chr3 127138652 127138704 -32461079 + (TTA)n Simple_repeat Simple_repeat 3 54 0 3 1554 1176 76 0 0 chr3 127138704 127138862 -32460921 - B2_Mm1t SINE B2 -35 158 1 3 1554 527 301 0 44 chr3 127138893 127139053 -32460730 + B3A SINE B2 2 154 -44 3 1554 405 0 0 0 chr3 127139053 127139098 -32460685 + (CA)n Simple_repeat Simple_repeat 1 45 0 3 1554 222 150 0 0 chr3 127139104 127139144 -32460639 + (GGGAGA)n Simple_repeat Simple_repeat 1 40 0 3 1554 223 206 14 42 chr3 127139190 127139261 -32460522 + T-rich Low_complexity Low_complexity 1 69 0 3 1554 693 214 20 48 chr3 127139262 127139409 -32460374 - B1_Mur1 SINE Alu -1 148 6 3 1554 259 250 52 65 chr3 127139590 127139667 -32460116 + PB1D10 SINE Alu 31 106 -11 3 1554 323 211 0 11 chr3 127139737 127139828 -32459955 + G-rich Low_complexity Low_complexity 1 90 0 3 1555 248 200 36 0 chr3 127139878 127139933 -32459850 + B1_Mur4 SINE Alu 6 62 -88 3 1555 2952 243 60 45 chr3 127139969 127140800 -32458983 + Lx8 LINE L1 6120 6963 -510 3 1555 693 232 0 7 chr3 127140836 127140975 -32458808 + B1_Mur2 SINE Alu 2 139 -10 3 1555 651 330 122 7 chr3 127140985 127141287 -32458496 + Lx8 LINE L1 7118 7454 -19 3 1555 590 203 23 8 chr3 127141311 127141440 -32458343 + B1_Mur2 SINE Alu 5 135 -14 3 1555 459 0 0 0 chr3 127141469 127141520 -32458263 + (GGAA)n Simple_repeat Simple_repeat 2 52 0 3 1555 267 191 22 87 chr3 127141530 127141576 -32458207 + L1_Rod LINE L1 5549 5593 -254 3 1555 949 226 9 32 chr3 127141576 127141795 -32457988 - B3 SINE B2 -2 214 1 3 1555 267 191 22 87 chr3 127141795 127141840 -32457943 + L1_Rod LINE L1 5594 5634 -213 3 1555 325 317 47 23 chr3 127141831 127142002 -32457781 + Lx7 LINE L1 5742 5916 -1780 3 1555 1387 87 16 0 chr3 127142155 127142339 -32457444 + B2_Mm2 SINE B2 4 190 -5 3 1555 1592 47 0 10 chr3 127142344 127142536 -32457247 + B2_Mm1a SINE B2 2 191 -2 3 1555 1404 29 103 0 chr3 127142568 127142743 -32457040 + B2_Mm1t SINE B2 1 193 0 3 1555 1040 88 0 51 chr3 127142861 127143017 -32456766 + B1_Mus1 SINE Alu 1 148 0 3 1555 511 53 27 0 chr3 127143025 127143100 -32456683 + (GA)n Simple_repeat Simple_repeat 2 78 0 3 1555 847 209 90 138 chr3 127143545 127143901 -32455882 + ORR1C2 LTR MaLR 1 339 -45 3 1555 821 133 66 54 chr3 127143908 127144075 -32455708 + B2_Mm2 SINE B2 1 169 -26 3 1555 180 0 0 0 chr3 127144077 127144097 -32455686 + (GA)n Simple_repeat Simple_repeat 2 21 0 3 1555 325 80 0 57 chr3 127144097 127144150 -32455633 + ORR1C2 LTR MaLR 335 384 0 3 1555 13916 78 1 40 chr3 127144192 127145096 -32454687 + L1_Mus1 LINE L1 3993 4876 -1007 3 1555 1455 58 16 5 chr3 127145096 127145288 -32454495 - B2_Mm2 SINE B2 0 195 2 3 1555 13916 78 1 40 chr3 127145288 127145600 -32454183 + L1_Mus1 LINE L1 4877 5172 -711 3 1555 1710 26 0 0 chr3 127145600 127145793 -32453990 + B2_Mm1a SINE B2 1 193 0 3 1555 13916 65 1 20 chr3 127145793 127146667 -32453116 + L1_Mus1 LINE L1 5173 6008 -558 3 1555 1332 6 0 0 chr3 127146671 127146831 -32452952 + B2_Mm1a SINE B2 1 160 -33 3 1555 378 0 0 0 chr3 127146831 127146873 -32452910 + (TAAA)n Simple_repeat Simple_repeat 3 44 0 3 1555 4072 87 12 12 chr3 127146875 127147320 -32452463 + L1_Mus1 LINE L1 5998 6444 -123 3 1555 2722 31 0 6 chr3 127147320 127147644 -32452139 + RLTRETN_Mm LTR ERVK 1 322 0 3 1555 4072 87 12 12 chr3 127147644 127147768 -32452015 + L1_Mus1 LINE L1 6445 6567 0 3 1555 1551 28 23 0 chr3 127147911 127148088 -32451695 + B2_Mm1a SINE B2 2 182 -11 3 1555 207 0 0 0 chr3 127148088 127148111 -32451672 + (TAAAA)n Simple_repeat Simple_repeat 2 24 0 3 1555 639 250 20 13 chr3 127148125 127148275 -32451508 + B3 SINE B2 8 158 -58 3 1555 402 250 31 31 chr3 127148251 127148379 -32451404 + B3 SINE B2 84 211 -5 3 1555 1423 45 0 28 chr3 127148419 127148600 -32451183 + B2_Mm2 SINE B2 2 177 -18 3 1555 491 0 17 0 chr3 127148621 127148680 -32451103 + (TAAA)n Simple_repeat Simple_repeat 4 63 0 3 1555 1126 59 0 0 chr3 127148757 127148893 -32450890 + B1_Mus1 SINE Alu 2 137 -11 3 1555 225 0 0 0 chr3 127148893 127148918 -32450865 + (CAAAA)n Simple_repeat Simple_repeat 3 27 0 3 1555 1438 78 11 0 chr3 127149463 127149654 -32450129 + B2_Mm1t SINE B2 1 193 0 3 1555 748 222 112 10 chr3 127149757 127149953 -32449830 + B3 SINE B2 1 216 0 3 1555 837 98 16 0 chr3 127149964 127150087 -32449696 + B1_Mus2 SINE Alu 1 125 -22 3 1555 240 35 0 0 chr3 127150103 127150132 -32449651 + (TAAA)n Simple_repeat Simple_repeat 1 29 0 3 1555 30 0 0 0 chr3 127150218 127150248 -32449535 + AT_rich Low_complexity Low_complexity 1 30 0 3 1555 807 254 38 0 chr3 127150260 127150445 -32449338 - B3 SINE B2 -6 210 19 3 1555 843 158 7 7 chr3 127150444 127150584 -32449199 + B1_Mus2 SINE Alu 7 146 -1 3 1555 512 275 66 17 chr3 127150610 127150791 -32448992 + B3A SINE B2 7 196 -2 3 1555 1154 82 0 0 chr3 127150799 127150946 -32448837 + B1_Mm SINE Alu 1 147 0 3 1555 228 135 0 0 chr3 127150946 127150983 -32448800 + (TAAA)n Simple_repeat Simple_repeat 4 40 0 3 1555 1250 124 0 49 chr3 127151012 127151216 -32448567 + B2_Mm2 SINE B2 2 195 0 3 1555 870 145 51 73 chr3 127151229 127151407 -32448376 + B2_Mm2 SINE B2 3 176 -19 3 1555 304 125 0 0 chr3 127151674 127151722 -32448061 + B2_Mm1t SINE B2 106 153 -40 4 1555 1023 99 7 0 chr3 127151950 127152101 -32447682 + B2_Mm1t SINE B2 2 153 -40 4 1555 284 343 22 7 chr3 127152331 127152469 -32447314 + RMER15 LTR ERVL 422 561 -14 4 1555 485 32 0 0 chr3 127152521 127152584 -32447199 + L1Md_T LINE L1 6519 6581 -1 4 1555 604 203 14 2 chr3 127152755 127152899 -32446884 + B1_Mur4 SINE Alu 2 142 -5 4 1555 225 221 59 0 chr3 127153805 127153873 -32445910 + GA-rich Low_complexity Low_complexity 1 72 0 4 1555 392 290 102 54 chr3 127153972 127154158 -32445625 - MLT2B1 LTR ERVL -13 554 360 4 1555 304 269 39 0 chr3 127154738 127154816 -32444967 - ID4_ SINE ID -2 81 1 4 1555 756 191 80 35 chr3 127155241 127155442 -32444341 - B3 SINE B2 -5 211 2 4 1555 1193 55 0 0 chr3 127155467 127155612 -32444171 + B1_Mm SINE Alu 1 145 -2 4 1555 543 208 0 74 chr3 127156242 127156377 -32443406 + B1_Mur3 SINE Alu 2 126 -23 4 1555 1196 89 78 0 chr3 127156882 127157061 -32442722 + B2_Mm2 SINE B2 2 194 -1 4 1555 234 197 0 3 chr3 127157073 127157122 -32442661 + ID2 SINE ID 3 50 -102 4 1555 180 333 0 0 chr3 127157449 127157497 -32442286 + MIRc SINE MIR 104 151 -117 4 1555 453 50 0 0 chr3 127157912 127157972 -32441811 + (CA)n Simple_repeat Simple_repeat 2 61 0 4 1555 204 125 0 0 chr3 127158557 127158589 -32441194 + (TTC)n Simple_repeat Simple_repeat 2 33 0 4 1555 1211 54 0 0 chr3 127158591 127158738 -32441045 - B1_Mus2 SINE Alu 0 147 1 4 1555 522 188 0 89 chr3 127158932 127159055 -32440728 - B1_Mur2 SINE Alu -14 135 24 4 1555 339 276 177 36 chr3 127159111 127159291 -32440492 + ID_B1 SINE B4 3 211 -13 4 1555 1039 123 82 27 chr3 127159291 127159475 -32440308 + B2_Mm2 SINE B2 1 194 -1 4 1555 339 276 177 36 chr3 127159475 127159486 -32440297 + ID_B1 SINE B4 212 221 -3 4 1555 594 259 135 22 chr3 127159510 127159688 -32440095 + B3A SINE B2 1 198 0 4 1555 1836 0 0 0 chr3 127159713 127159919 -32439864 + L1Md_T LINE L1 6377 6582 0 4 1555 393 303 66 36 chr3 127159931 127160068 -32439715 + RSINE1 SINE B4 3 143 -22 4 1555 203 357 61 26 chr3 127160161 127160276 -32439507 + MIRb SINE MIR 33 151 -117 4 1555 246 105 0 0 chr3 127160517 127160555 -32439228 + (TTTTG)n Simple_repeat Simple_repeat 1 38 0 4 1555 590 177 30 68 chr3 127160556 127160689 -32439094 - B1F SINE Alu -1 148 21 4 1555 217 280 66 13 chr3 127160629 127160705 -32439078 - B4A SINE B4 -127 165 86 4 1555 1337 89 10 50 chr3 127160759 127160961 -32438822 + B2_Mm2 SINE B2 2 195 0 4 1555 463 261 31 173 chr3 127162187 127162447 -32437336 + ID_B1 SINE B4 2 224 0 4 1555 708 115 73 51 chr3 127162311 127162448 -32437335 + B1_Mur3 SINE Alu 10 149 0 4 1555 222 196 0 0 chr3 127163225 127163271 -32436512 + CT-rich Low_complexity Low_complexity 1 46 0 4 1555 189 0 0 0 chr3 127163351 127163372 -32436411 + (CA)n Simple_repeat Simple_repeat 2 22 0 4 1555 225 0 0 0 chr3 127163372 127163396 -32436387 + (GA)n Simple_repeat Simple_repeat 2 26 0 4 1555 780 176 7 0 chr3 127163452 127163594 -32436189 - B1_Mus1 SINE Alu 0 148 6 4 1555 291 28 0 0 chr3 127164243 127164279 -32435504 + (TG)n Simple_repeat Simple_repeat 2 37 0 4 1555 968 86 7 0 chr3 127164744 127164884 -32434899 + (GAAA)n Simple_repeat Simple_repeat 2 142 0 4 1555 261 279 15 0 chr3 127164896 127164964 -32434819 - ID4_ SINE ID -3 80 12 4 1555 22 0 0 0 chr3 127165660 127165682 -32434101 + AT_rich Low_complexity Low_complexity 1 22 0 4 1555 507 177 104 0 chr3 127165723 127165819 -32433964 - B1_Mus2 SINE Alu -1 146 41 4 1555 21 57 0 0 chr3 127167601 127167636 -32432147 + AT_rich Low_complexity Low_complexity 1 35 0 4 1555 1208 0 21 0 chr3 127168131 127168273 -32431510 + (GGAGA)n Simple_repeat Simple_repeat 2 146 0 4 1555 529 281 53 16 chr3 127168285 127168473 -32431310 + B3A SINE B2 1 195 -3 4 1555 218 242 0 70 chr3 127168588 127168659 -32431124 + PB1D10 SINE Alu 46 111 -6 4 1555 760 216 135 0 chr3 127168699 127168884 -32430899 + B3 SINE B2 4 213 -3 4 1555 355 183 43 16 chr3 127169226 127169326 -32430457 - PB1D10 SINE Alu -21 126 22 4 1555 257 211 175 21 chr3 127169603 127169700 -32430083 + L1M5 LINE L1 5550 5661 -463 4 1555 287 266 86 26 chr3 127169732 127169848 -32429935 + ID_B1 SINE B4 94 216 -8 4 1555 1089 35 7 0 chr3 127169863 127170004 -32429779 + B1_Mus1 SINE Alu 7 148 0 4 1555 189 74 0 0 chr3 127170008 127170035 -32429748 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 4 1555 266 262 34 45 chr3 127170096 127170184 -32429599 + B3A SINE B2 110 196 -2 4 1555 570 131 118 39 chr3 127170268 127170395 -32429388 + B1_Mur3 SINE Alu 13 149 0 4 1555 427 202 0 35 chr3 127170526 127170613 -32429170 + B1_Mur1 SINE Alu 65 148 -1 4 1555 222 329 11 58 chr3 127170640 127170727 -32429056 - ID4_ SINE ID 0 83 1 4 1555 446 248 54 18 chr3 127170765 127170876 -32428907 + PB1D10 SINE Alu 1 115 -2 4 1555 811 34 238 25 chr3 127170936 127171058 -32428725 - B1_Mus1 SINE Alu 0 148 1 4 1555 497 214 29 0 chr3 127171927 127172030 -32427753 - ID_B1 SINE B4 -34 190 85 4 1555 243 60 39 20 chr3 127172572 127172623 -32427160 + (TTTTTG)n Simple_repeat Simple_repeat 2 53 0 4 1555 306 0 0 0 chr3 127172775 127172809 -32426974 + (CA)n Simple_repeat Simple_repeat 2 35 0 4 1555 238 253 50 71 chr3 127172813 127172945 -32426838 - L2a LINE L2 -2 3424 3241 4 1555 202 29 57 0 chr3 127172992 127173027 -32426756 + (CAAAAA)n Simple_repeat Simple_repeat 6 42 0 4 1555 272 311 47 0 chr3 127173114 127173220 -32426563 + PB1D10 SINE Alu 4 114 -3 4 1555 967 285 99 110 chr3 127173374 127173643 -32426140 - Lx8 LINE L1 -958 6515 6197 4 1555 222 37 0 0 chr3 127173643 127173670 -32426113 + (TCC)n Simple_repeat Simple_repeat 2 28 0 4 1555 207 0 0 0 chr3 127173679 127173702 -32426081 + (TTG)n Simple_repeat Simple_repeat 2 24 0 4 1555 967 285 99 110 chr3 127173702 127173718 -32426065 - Lx8 LINE L1 -1283 6190 6176 4 1555 831 185 0 40 chr3 127173718 127173870 -32425913 - B1_Mur4 SINE Alu 0 150 5 4 1555 540 0 0 0 chr3 127173873 127173933 -32425850 + (TG)n Simple_repeat Simple_repeat 2 61 0 4 1555 943 125 0 0 chr3 127173942 127174070 -32425713 - B1_Mur3 SINE Alu -19 130 3 4 1555 967 267 65 74 chr3 127174070 127174494 -32425289 - Lx8 LINE L1 -1298 6175 5790 4 1555 737 252 39 39 chr3 127174557 127174763 -32425020 - ID_B1 SINE B4 -14 210 5 4 1555 1198 188 10 5 chr3 127174792 127175001 -32424782 - B3 SINE B2 -5 211 2 4 1555 242 330 41 0 chr3 127175061 127175158 -32424625 - L2 LINE L2 -1903 1516 1416 4 1555 234 308 87 11 chr3 127175208 127175300 -32424483 + MER5A DNA MER1_type 18 116 -73 4 1555 276 272 85 39 chr3 127175393 127175523 -32424260 + RSINE1 SINE B4 12 147 -18 4 1555 360 0 0 0 chr3 127175528 127175568 -32424215 + (CA)n Simple_repeat Simple_repeat 2 41 0 4 1555 257 288 0 0 chr3 127175691 127175764 -32424019 + ID4 SINE ID 5 77 -6 4 1555 234 0 0 0 chr3 127175767 127175793 -32423990 + (CA)n Simple_repeat Simple_repeat 1 26 0 4 1555 390 233 0 22 chr3 127175910 127176002 -32423781 - PB1D10 SINE Alu -6 111 22 4 1555 316 253 188 20 chr3 127175930 127176079 -32423704 - ID_B1 SINE B4 -50 174 1 4 1555 849 83 0 0 chr3 127176544 127176676 -32423107 + (TC)n Simple_repeat Simple_repeat 1 132 0 4 1555 286 308 21 32 chr3 127176810 127176904 -32422879 + RSINE1 SINE B4 60 152 -13 4 1555 29 28 0 0 chr3 127176920 127176956 -32422827 + AT_rich Low_complexity Low_complexity 1 36 0 4 1555 329 75 19 0 chr3 127177109 127177162 -32422621 + (TG)n Simple_repeat Simple_repeat 2 55 0 4 1555 244 320 86 102 chr3 127177447 127177760 -32422023 + MLT1G1 LTR MaLR 258 565 -14 4 1555 285 320 39 0 chr3 127177839 127177917 -32421866 - MER2 DNA MER2_type 0 345 265 4 1555 780 236 78 5 chr3 127178175 127178227 -32421556 - B3 SINE B2 -10 206 141 4 1555 549 0 0 0 chr3 127178227 127178288 -32421495 + (CTG)n Simple_repeat Simple_repeat 1 61 0 4 1555 780 236 78 5 chr3 127178288 127178427 -32421356 - B3 SINE B2 -76 140 1 4 1555 299 158 18 0 chr3 127178584 127178641 -32421142 - B4A SINE B4 -232 60 3 4 1555 401 300 28 7 chr3 127178701 127178842 -32420941 + RSINE1 SINE B4 3 146 -19 4 1555 212 0 36 0 chr3 127179061 127179089 -32420694 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 4 1555 375 286 20 79 chr3 127179116 127179268 -32420515 - B1F SINE Alu -6 143 1 4 1555 514 265 77 56 chr3 127179268 127179337 -32420446 - ID SINE ID -150 74 2 4 1555 598 275 19 12 chr3 127179448 127179610 -32420173 + B3 SINE B2 27 189 -27 4 1555 467 305 0 0 chr3 127179785 127179903 -32419880 - RSINE1 SINE B4 -45 120 3 4 1555 293 274 49 56 chr3 127179904 127180047 -32419736 + L1MB2 LINE L1 6030 6171 0 4 1555 893 330 11 0 chr3 127180054 127180315 -32419468 + B4 SINE B4 3 266 -26 4 1555 306 0 0 0 chr3 127180320 127180354 -32419429 + (CA)n Simple_repeat Simple_repeat 2 35 0 4 1555 708 168 253 18 chr3 127181030 127181200 -32418583 + B3 SINE B2 1 210 -6 4 1555 968 62 123 0 chr3 127181293 127181423 -32418360 - B1_Mm SINE Alu 0 147 2 4 1555 1002 158 14 93 chr3 127181663 127181879 -32417904 - ORR1A3 LTR MaLR -122 204 6 4 1555 236 273 88 35 chr3 127182198 127182312 -32417471 - ORR1E LTR MaLR -239 120 1 4 1555 899 71 7 21 chr3 127182543 127182687 -32417096 + (TTTC)n Simple_repeat Simple_repeat 2 143 0 4 1555 1191 76 6 6 chr3 127182760 127182925 -32416858 + B2_Mm2 SINE B2 1 166 -29 5 1555 285 0 43 22 chr3 127182925 127182971 -32416812 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 5 1555 3610 66 28 6 chr3 127183336 127183808 -32415975 + RLTR45 LTR ERVK 1 482 0 5 1555 666 0 0 0 chr3 127184089 127184163 -32415620 + (CAG)n Simple_repeat Simple_repeat 1 74 0 5 1555 728 112 0 0 chr3 127184468 127184575 -32415208 - B1_Mur3 SINE Alu -9 140 34 5 1555 23 0 0 0 chr3 127184599 127184622 -32415161 + AT_rich Low_complexity Low_complexity 1 23 0 5 1555 291 71 0 0 chr3 127185289 127185331 -32414452 + (T)n Simple_repeat Simple_repeat 1 42 0 5 1555 1290 27 0 0 chr3 127185331 127185478 -32414305 - B1_Mm SINE Alu 0 147 1 5 1555 766 169 77 0 chr3 127185518 127185648 -32414135 - B1_Mur4 SINE Alu -10 140 1 5 1555 242 322 21 11 chr3 127185648 127185742 -32414041 - RSINE1 SINE B4 -68 97 3 5 1555 400 250 111 43 chr3 127186777 127186894 -32412889 - ID_B1 SINE B4 -9 215 91 5 1555 254 257 0 14 chr3 127188446 127188517 -32411266 - ID4 SINE ID -11 72 3 5 1555 348 303 55 0 chr3 127188524 127188633 -32411150 - PB1D7 SINE Alu -5 115 1 5 1555 496 152 87 24 chr3 127188712 127188823 -32410960 - B1_Mus2 SINE Alu 0 120 10 5 1555 336 206 120 30 chr3 127188868 127188879 -32410904 - PB1D10 SINE Alu 0 117 107 5 1555 1154 55 7 0 chr3 127188879 127189024 -32410759 - B1_Mm SINE Alu 0 147 2 5 1555 337 206 120 30 chr3 127189024 127189112 -32410671 - B1F SINE Alu -11 106 9 5 1555 505 275 84 11 chr3 127189663 127189868 -32409915 - B3A SINE B2 0 216 1 5 1555 217 0 61 0 chr3 127190897 127190930 -32408853 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 5 1555 22 0 0 0 chr3 127191005 127191027 -32408756 + AT_rich Low_complexity Low_complexity 1 22 0 5 1555 819 196 0 0 chr3 127191366 127191514 -32408269 + B1_Mus1 SINE Alu 1 148 0 5 1555 21 0 0 0 chr3 127191657 127191678 -32408105 + AT_rich Low_complexity Low_complexity 1 21 0 5 1555 588 247 55 106 chr3 127192188 127192405 -32407378 + B3 SINE B2 6 211 -5 5 1555 212 244 28 162 chr3 127192426 127192568 -32407215 + RSINE1 SINE B4 2 124 -41 5 1555 640 212 0 17 chr3 127192880 127193000 -32406783 - PB1D9 SINE Alu -2 118 1 5 1555 1292 149 13 47 chr3 127193037 127193270 -32406513 + URR1B DNA MER1_type 1 225 0 5 1555 861 156 0 0 chr3 127193375 127193510 -32406273 + B1_Mus1 SINE Alu 6 140 -8 5 1555 423 0 0 0 chr3 127193514 127193561 -32406222 + (TAAAA)n Simple_repeat Simple_repeat 2 48 0 5 1555 588 29 0 0 chr3 127193675 127193745 -32406038 + (TCTA)n Simple_repeat Simple_repeat 4 73 0 5 1555 634 167 16 8 chr3 127193853 127193980 -32405803 - B3 SINE B2 -86 130 3 5 1555 423 161 308 17 chr3 127193981 127194101 -32405682 - ID_B1 SINE B4 -67 157 3 5 1555 218 239 0 101 chr3 127194198 127194277 -32405506 - ID4 SINE ID -1 82 12 5 1555 2330 78 18 59 chr3 127194584 127194925 -32404858 - ORR1A2 LTR MaLR 0 327 1 5 1555 281 361 62 0 chr3 127194931 127195075 -32404708 - MIR SINE MIR -102 160 8 5 1555 453 332 30 47 chr3 127195587 127195821 -32403962 + MLT1G1 LTR MaLR 45 274 -305 5 1555 370 270 89 30 chr3 127196068 127196236 -32403547 + MIR SINE MIR 45 222 -40 5 1555 231 327 37 9 chr3 127196402 127196510 -32403273 + MLT1G1 LTR MaLR 459 569 -10 5 1555 572 186 59 0 chr3 127196523 127196641 -32403142 - MTC-int LTR MaLR -628 630 506 5 1555 1208 68 0 0 chr3 127196653 127196800 -32402983 - B1_Mus2 SINE Alu 0 147 1 5 1555 500 125 12 0 chr3 127196800 127196880 -32402903 - MTC LTR MaLR -340 81 1 5 1555 732 287 58 18 chr3 127196881 127197195 -32402588 + L1MD1 LINE L1 5627 5948 -294 5 1555 218 240 20 0 chr3 127197201 127197251 -32402532 + BC1_Mm scRNA scRNA 33 83 -69 5 1555 304 83 50 0 chr3 127197256 127197316 -32402467 + (CAGAGA)n Simple_repeat Simple_repeat 2 64 0 5 1555 267 252 126 0 chr3 127197379 127197482 -32402301 + L1MD1 LINE L1 6037 6152 -27 5 1555 520 261 8 0 chr3 127197493 127197623 -32402160 + ID_B1 SINE B4 79 209 -15 5 1555 279 0 0 0 chr3 127197685 127197716 -32402067 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 5 1555 955 25 0 0 chr3 127197716 127197834 -32401949 - B1_Mm SINE Alu -8 139 22 5 1555 447 106 0 0 chr3 127197834 127197900 -32401883 + (CA)n Simple_repeat Simple_repeat 1 66 0 5 1555 449 255 81 136 chr3 127198279 127198515 -32401268 - ID_B1 SINE B4 -1 223 1 5 1555 290 276 65 13 chr3 127198519 127198596 -32401187 - PB1D10 SINE Alu -8 109 29 5 1555 826 120 0 0 chr3 127198688 127198813 -32400970 + B1_Mus1 SINE Alu 22 146 -2 5 1555 186 133 0 0 chr3 127198985 127199015 -32400768 + (TTTC)n Simple_repeat Simple_repeat 3 32 0 5 1555 534 175 66 73 chr3 127199015 127199151 -32400632 - B1_Mus2 SINE Alu 0 147 13 5 1555 525 218 0 19 chr3 127200800 127200943 -32398840 - B1_Mur2 SINE Alu -6 143 5 5 1555 898 274 9 0 chr3 127202696 127202915 -32396868 + ID_B1 SINE B4 2 222 -2 5 1555 262 344 91 30 chr3 127203946 127204078 -32395705 + ID_B1 SINE B4 84 223 -1 5 1555 277 295 61 83 chr3 127204112 127204293 -32395490 + L2 LINE L2 856 1032 -2387 5 1555 763 136 16 0 chr3 127204335 127204460 -32395323 - B1_Mur4 SINE Alu -13 137 11 5 1555 252 335 42 36 chr3 127204471 127204638 -32395145 + L2 LINE L2 1050 1217 -2202 5 1555 924 65 0 0 chr3 127204651 127204775 -32395008 + (TG)n Simple_repeat Simple_repeat 2 125 0 5 1555 335 189 149 0 chr3 127204775 127204849 -32394934 + B3A SINE B2 9 93 -105 5 1555 180 315 0 18 chr3 127204865 127204920 -32394863 + L2 LINE L2 1240 1293 -2126 5 1555 1381 239 195 49 chr3 127206317 127206892 -32392891 - Lx6 LINE L1 0 7460 6802 5 1555 308 297 0 0 chr3 127206921 127206995 -32392788 + Lx5 LINE L1 6258 6331 -719 5 1555 447 92 0 0 chr3 127207036 127207101 -32392682 + (TG)n Simple_repeat Simple_repeat 2 66 0 5 1555 388 282 41 21 chr3 127207109 127207254 -32392529 - RSINE1 SINE B4 -14 151 4 5 1555 536 273 111 25 chr3 127207264 127207463 -32392320 - ID_B1 SINE B4 -7 217 2 5 1555 854 64 110 16 chr3 127207791 127207918 -32391865 + B1_Mus1 SINE Alu 2 140 -8 5 1555 441 156 0 0 chr3 127207955 127208032 -32391751 + (TA)n Simple_repeat Simple_repeat 1 77 0 5 1555 1105 95 0 13 chr3 127208053 127208202 -32391581 - B1_Mm SINE Alu 0 147 1 5 1555 869 231 199 20 chr3 127208202 127208332 -32391451 + ORR1C2 LTR MaLR 30 171 -213 5 1555 456 19 0 0 chr3 127208332 127208385 -32391398 + (TC)n Simple_repeat Simple_repeat 2 54 0 5 1555 869 231 199 20 chr3 127208385 127208555 -32391228 + ORR1C2 LTR MaLR 172 383 -1 5 1555 579 316 15 0 chr3 127208560 127208756 -32391027 + B3 SINE B2 18 216 0 5 1555 27 0 0 0 chr3 127208758 127208785 -32390998 + AT_rich Low_complexity Low_complexity 1 27 0 5 1555 416 268 118 0 chr3 127208950 127209077 -32390706 + B1_Mur1 SINE Alu 2 143 -6 5 1555 457 266 28 0 chr3 127210299 127210408 -32389375 + PB1D10 SINE Alu 5 116 -1 5 1555 596 227 66 60 chr3 127210494 127210677 -32389106 + B3A SINE B2 15 198 0 5 1555 511 240 75 37 chr3 127211845 127211979 -32387804 + RSINE1 SINE B4 8 146 -19 5 1555 285 29 0 0 chr3 127211987 127212021 -32387762 + (CATA)n Simple_repeat Simple_repeat 2 35 0 5 1555 282 206 0 105 chr3 127212111 127212187 -32387596 + B1_Mur2 SINE Alu 32 99 -18 5 1555 222 104 63 0 chr3 127212210 127212259 -32387524 + PB1D9 SINE Alu 79 149 0 5 1555 482 0 17 0 chr3 127212259 127212317 -32387466 + (GA)n Simple_repeat Simple_repeat 1 59 0 5 1555 564 15 0 0 chr3 127212317 127212382 -32387401 + (GGAA)n Simple_repeat Simple_repeat 4 68 0 5 1555 460 243 18 18 chr3 127212389 127212498 -32387285 + B3A SINE B2 1 109 -89 5 1555 26 30 0 0 chr3 127212573 127212606 -32387177 + AT_rich Low_complexity Low_complexity 1 33 0 5 1555 879 125 14 27 chr3 127212616 127212764 -32387019 - B1_Mus1 SINE Alu -1 147 2 5 1555 686 254 77 0 chr3 127213310 127213519 -32386264 - B4A SINE B4 -60 232 8 5 1555 859 161 0 0 chr3 127213576 127213706 -32386077 - B3 SINE B2 -86 130 1 5 1555 1197 62 0 0 chr3 127213729 127213875 -32385908 - B1_Mus1 SINE Alu -1 147 2 5 1555 231 114 0 0 chr3 127214093 127214128 -32385655 + (TC)n Simple_repeat Simple_repeat 1 35 0 5 1555 486 0 0 0 chr3 127214147 127214201 -32385582 + (TG)n Simple_repeat Simple_repeat 1 54 0 5 1555 252 229 0 0 chr3 127214220 127214268 -32385515 + PB1 SINE Alu 7 54 -73 5 1555 506 281 101 0 chr3 127214355 127214533 -32385250 - L1MD1 LINE L1 -246 5996 5801 5 1555 429 109 0 0 chr3 127215768 127215832 -32383951 + (AGGGGG)n Simple_repeat Simple_repeat 5 68 0 5 1555 396 0 0 0 chr3 127216236 127216280 -32383503 + (GA)n Simple_repeat Simple_repeat 1 44 0 5 1555 319 257 23 64 chr3 127216374 127216512 -32383271 + B1_Mur1 SINE Alu 1 124 -25 5 1555 351 0 0 0 chr3 127216523 127216562 -32383221 + (TG)n Simple_repeat Simple_repeat 2 40 0 5 1555 246 261 14 14 chr3 127216574 127216644 -32383139 - ID4_ SINE ID 0 83 14 5 1555 298 104 0 0 chr3 127217462 127217510 -32382273 - MT2A LTR ERVL 0 533 486 5 1555 1554 225 53 99 chr3 127217694 127218199 -32381584 + Lx9 LINE L1 6975 7459 -185 5 1555 549 0 0 0 chr3 127218199 127218260 -32381523 + (TC)n Simple_repeat Simple_repeat 2 62 0 5 1555 1554 225 53 99 chr3 127218260 127218277 -32381506 + Lx9 LINE L1 7460 7473 -171 5 1555 555 199 147 21 chr3 127218456 127218646 -32381137 + MER33 DNA MER1_type 1 214 -110 5 1555 230 197 0 32 chr3 127218743 127218806 -32380977 + MER33 DNA MER1_type 233 293 -31 5 1555 1908 170 35 37 chr3 127218959 127219363 -32380420 - MTB_Mm LTR MaLR 0 407 5 5 1555 254 214 60 20 chr3 127220155 127220255 -32379528 - Lx9 LINE L1 -9 7635 7532 5 1555 288 226 43 17 chr3 127220304 127220421 -32379362 - Lx7 LINE L1 -4 7692 7573 5 1555 620 227 0 15 chr3 127220531 127220661 -32379122 - Lx9 LINE L1 -472 7172 7045 5 1555 700 202 36 177 chr3 127220724 127221001 -32378782 - Lx9 LINE L1 -611 7033 6796 5 1555 297 0 0 0 chr3 127221009 127221042 -32378741 + (TA)n Simple_repeat Simple_repeat 1 33 0 5 1555 585 287 40 60 chr3 127221097 127221297 -32378486 + ID_B1 SINE B4 24 219 -5 5 1555 316 323 16 79 chr3 127221499 127221751 -32378032 - L2a LINE L2 -229 3197 2962 6 1555 845 164 14 7 chr3 127222152 127222299 -32377484 - B1_Mus1 SINE Alu 0 148 1 6 1555 279 0 0 0 chr3 127222312 127222343 -32377440 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 6 1555 1204 69 7 0 chr3 127222343 127222487 -32377296 - B1_Mm SINE Alu -2 145 1 6 1555 621 102 4 12 chr3 127222507 127222615 -32377168 - B1_Mus2 SINE Alu -1 148 45 6 1555 900 195 101 43 chr3 127222733 127222942 -32376841 - ID_B1 SINE B4 -3 221 1 6 1555 739 112 91 130 chr3 127222977 127223131 -32376652 - B1_Mus1 SINE Alu 0 148 1 6 1555 720 215 0 0 chr3 127223209 127223339 -32376444 - B3 SINE B2 -86 130 1 6 1555 420 248 15 81 chr3 127223522 127223658 -32376125 - RSINE1 SINE B4 -36 129 3 6 1555 601 180 0 20 chr3 127223707 127223809 -32375974 + PB1 SINE Alu 28 127 0 6 1555 585 163 15 75 chr3 127223853 127223986 -32375797 - B1_Mus1 SINE Alu -23 125 1 6 1555 404 168 79 144 chr3 127223986 127224012 -32375771 - MT2B LTR ERVL -457 144 128 6 1555 214 304 0 18 chr3 127224620 127224677 -32375106 + MIRb SINE MIR 44 99 -169 6 1555 540 185 0 0 chr3 127224940 127225048 -32374735 + CT-rich Low_complexity Low_complexity 1 108 0 6 1555 823 135 79 8 chr3 127225069 127225196 -32374587 - B1_Mus1 SINE Alu -8 140 5 6 1555 1414 82 14 12 chr3 127225464 127225673 -32374110 + L1Md_A LINE L1 5403 5612 -2270 6 1555 9480 11 0 0 chr3 127225673 127226669 -32373114 + L1Md_A LINE L1 5587 6582 0 6 1555 216 0 0 0 chr3 127226678 127226702 -32373081 + (A)n Simple_repeat Simple_repeat 1 24 0 6 1555 438 69 0 0 chr3 127226780 127226838 -32372945 + (CA)n Simple_repeat Simple_repeat 1 58 0 6 1555 207 0 0 0 chr3 127226991 127227014 -32372769 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 6 1555 844 216 42 105 chr3 127227024 127227124 -32372659 - URR1B DNA MER1_type -1 224 123 6 1555 649 124 132 9 chr3 127227124 127227230 -32372553 - PB1D9 SINE Alu 0 120 2 6 1555 844 216 42 105 chr3 127227230 127227367 -32372416 - URR1B DNA MER1_type -103 122 2 6 1555 467 298 18 42 chr3 127227458 127227626 -32372157 + RSINE1 SINE B4 2 165 0 6 1555 760 242 73 0 chr3 127227868 127228033 -32371750 + B3 SINE B2 3 179 -37 6 1555 636 14 0 0 chr3 127228033 127228106 -32371677 + (TAGA)n Simple_repeat Simple_repeat 1 73 0 6 1555 642 229 0 0 chr3 127229196 127229349 -32370434 + T-rich Low_complexity Low_complexity 1 153 0 6 1555 267 146 0 0 chr3 127229367 127229401 -32370382 + (T)n Simple_repeat Simple_repeat 1 34 0 6 1555 1228 55 0 7 chr3 127229401 127229549 -32370234 - B1_Mm SINE Alu 0 147 1 6 1555 267 146 0 0 chr3 127229549 127229562 -32370221 + (T)n Simple_repeat Simple_repeat 1 13 0 6 1555 199 298 18 0 chr3 127229623 127229680 -32370103 + MER5A DNA MER1_type 46 103 -86 6 1555 260 278 19 0 chr3 127230094 127230148 -32369635 - tRNA-Ala-GCY_ tRNA tRNA -9 66 12 6 1555 237 108 0 0 chr3 127230154 127230191 -32369592 + (TG)n Simple_repeat Simple_repeat 2 38 0 6 1555 24 32 0 0 chr3 127231058 127231089 -32368694 + AT_rich Low_complexity Low_complexity 1 31 0 6 1555 863 142 0 34 chr3 127231110 127231256 -32368527 - B1_Mus2 SINE Alu 0 147 7 6 1555 495 213 0 122 chr3 127231146 127231285 -32368498 - MT2B LTR ERVL -333 268 147 6 1555 1256 61 0 13 chr3 127231333 127231483 -32368300 + B1_Mus1 SINE Alu 1 148 0 6 1555 189 0 0 0 chr3 127231483 127231504 -32368279 + (A)n Simple_repeat Simple_repeat 1 21 0 6 1555 1481 55 16 16 chr3 127231515 127231677 -32368106 + B2_Mm2 SINE B2 4 163 -32 6 1555 186 43 0 0 chr3 127231677 127231700 -32368083 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 6 1555 1481 55 16 16 chr3 127231700 127231721 -32368062 + B2_Mm2 SINE B2 164 187 -8 6 1555 488 228 106 47 chr3 127231729 127231899 -32367884 + B3 SINE B2 37 216 0 6 1555 866 177 7 20 chr3 127231917 127232067 -32367716 - B1_Mur1 SINE Alu -1 148 1 6 1555 213 39 0 0 chr3 127232519 127232545 -32367238 + (TA)n Simple_repeat Simple_repeat 1 26 0 6 1555 1015 163 0 28 chr3 127232556 127232889 -32366894 + (CA)n Simple_repeat Simple_repeat 1 323 0 6 1555 351 294 29 19 chr3 127232895 127232999 -32366784 - B3A SINE B2 -44 154 50 6 1555 357 192 0 0 chr3 127233805 127233825 -32365958 + A-rich Low_complexity Low_complexity 1 20 0 6 1555 1137 83 28 0 chr3 127233825 127233969 -32365814 + B1_Mus1 SINE Alu 1 148 0 6 1555 357 192 0 0 chr3 127233969 127234026 -32365757 + A-rich Low_complexity Low_complexity 21 77 0 6 1555 225 264 13 53 chr3 127234152 127234228 -32365555 - MamRep137 DNA TcMar? -236 208 136 6 1555 226 315 68 0 chr3 127234275 127234348 -32365435 + PB1D10 SINE Alu 40 117 0 6 1555 275 45 0 43 chr3 127234348 127234394 -32365389 + (CAGAGA)n Simple_repeat Simple_repeat 3 46 0 6 1555 1037 245 28 0 chr3 127234510 127234726 -32365057 + ID_B1 SINE B4 3 224 0 6 1555 489 138 0 0 chr3 127234941 127235021 -32364762 + (CTA)n Simple_repeat Simple_repeat 1 80 0 6 1555 806 181 15 8 chr3 127235021 127235155 -32364628 - B1_Mus1 SINE Alu -2 146 12 6 1555 195 42 0 0 chr3 127235804 127235828 -32363955 + (TG)n Simple_repeat Simple_repeat 1 24 0 6 1555 704 259 0 58 chr3 127235840 127236012 -32363771 - RSINE1 SINE B4 0 165 4 6 1555 947 57 153 0 chr3 127236381 127236505 -32363278 + B1_Mus1 SINE Alu 2 144 -4 6 1555 390 57 0 0 chr3 127236505 127236558 -32363225 + (CAAT)n Simple_repeat Simple_repeat 1 53 0 6 1555 666 252 44 0 chr3 127236627 127236762 -32363021 - B1_Mur1 SINE Alu -8 141 1 6 1555 270 0 0 0 chr3 127237226 127237256 -32362527 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 6 1555 1213 83 0 0 chr3 127237256 127237401 -32362382 - B1_Mus1 SINE Alu -3 145 1 6 1555 423 0 0 0 chr3 127237405 127237452 -32362331 + (TC)n Simple_repeat Simple_repeat 2 48 0 6 1555 201 147 0 0 chr3 127237468 127237502 -32362281 + (CG)n Simple_repeat Simple_repeat 2 35 0 6 1555 263 289 52 13 chr3 127237507 127237584 -32362199 - B3A SINE B2 -14 184 105 6 1555 380 312 87 8 chr3 127237582 127237708 -32362075 + RSINE1 SINE B4 28 163 -2 6 1555 343 266 123 0 chr3 127237936 127238039 -32361744 + PB1D9 SINE Alu 1 115 -34 6 1555 666 269 0 0 chr3 127238098 127238239 -32361544 - B1_Mur1 SINE Alu -8 141 1 6 1555 210 324 106 85 chr3 127238285 127238392 -32361391 - B3 SINE B2 -13 203 1 6 1555 320 259 33 76 chr3 127238392 127238484 -32361299 - RSINE1 SINE B4 -76 89 2 6 1555 479 189 50 22 chr3 127239141 127239320 -32360463 - RMER17C LTR ERVK -135 275 92 6 1555 432 55 0 0 chr3 127239483 127239538 -32360245 + (GGAA)n Simple_repeat Simple_repeat 2 56 0 6 1555 23 54 0 0 chr3 127239585 127239622 -32360161 + AT_rich Low_complexity Low_complexity 1 37 0 6 1555 577 216 54 9 chr3 127240411 127240523 -32359260 + PB1D9 SINE Alu 2 118 -2 6 1555 345 47 0 0 chr3 127240683 127240726 -32359057 + (TTA)n Simple_repeat Simple_repeat 3 45 0 6 1555 1143 135 38 27 chr3 127240727 127240910 -32358873 - B2_Mm2 SINE B2 -10 185 1 6 1555 811 211 7 0 chr3 127240912 127241059 -32358724 - B1_Mur3 SINE Alu 0 149 2 6 1555 339 280 0 0 chr3 127241070 127241145 -32358638 - B1F1 SINE Alu -1 148 74 6 1555 23 86 0 0 chr3 127241377 127241435 -32358348 + AT_rich Low_complexity Low_complexity 1 58 0 6 1555 234 280 160 11 chr3 127241502 127241596 -32358187 - PB1D7 SINE Alu -3 117 10 6 1555 307 304 0 12 chr3 127241643 127241723 -32358060 + ID_B1 SINE B4 136 214 -10 6 1555 401 248 87 60 chr3 127241929 127242079 -32357704 + RSINE1 SINE B4 4 157 -8 6 1555 22 35 0 0 chr3 127242081 127242110 -32357673 + AT_rich Low_complexity Low_complexity 1 29 0 6 1555 1757 31 0 5 chr3 127245277 127245471 -32354312 - B2_Mm2 SINE B2 -2 193 1 6 1555 382 141 31 0 chr3 127245522 127245586 -32354197 + B1_Mus2 SINE Alu 77 142 -5 6 1555 204 40 0 0 chr3 127246142 127246167 -32353616 + (CAG)n Simple_repeat Simple_repeat 1 25 0 6 1555 1225 74 0 0 chr3 127246351 127246499 -32353284 - B1_Mus1 SINE Alu 0 148 1 6 1555 1087 115 127 0 chr3 127246511 127246676 -32353107 - B2_Mm2 SINE B2 -7 188 3 6 1555 220 173 38 19 chr3 127249270 127249323 -32350460 + CT-rich Low_complexity Low_complexity 3 56 0 6 1555 1598 59 0 10 chr3 127250651 127250856 -32348927 + L1Md_F2 LINE L1 6380 6582 0 6 1555 731 64 0 63 chr3 127250933 127251062 -32348721 + B2_Mm2 SINE B2 53 175 -18 6 1555 249 342 0 41 chr3 127251310 127251432 -32348351 + L2 LINE L2 2350 2466 -953 6 1555 494 124 22 11 chr3 127251434 127251524 -32348259 + RLTR28 LTR ERVL 394 484 -40 6 1555 307 382 61 35 chr3 127251611 127251809 -32347974 + L2 LINE L2 2578 2780 -639 6 1555 275 279 151 0 chr3 127252115 127252201 -32347582 + PB1D9 SINE Alu 1 99 -21 6 1555 955 156 136 0 chr3 127252365 127252564 -32347219 + URR1A DNA MER1_type 1 226 0 6 1555 359 299 155 9 chr3 127252564 127252589 -32347194 - CYRA11_Mm Unknown Y-chromosome -227 388 132 6 1555 788 237 51 40 chr3 127253260 127253436 -32346347 + B3A SINE B2 5 182 -16 6 1555 423 83 0 0 chr3 127253447 127253507 -32346276 + (CA)n Simple_repeat Simple_repeat 2 61 0 6 1555 215 154 0 25 chr3 127253519 127253559 -32346224 + (CATA)n Simple_repeat Simple_repeat 2 40 0 6 1555 1438 67 50 0 chr3 127253579 127253759 -32346024 + B2_Mm2 SINE B2 3 191 -4 6 1555 1165 73 0 0 chr3 127253761 127253897 -32345886 + B1_Mm SINE Alu 1 136 -11 6 1555 230 21 62 21 chr3 127253938 127253986 -32345797 + (CAAAA)n Simple_repeat Simple_repeat 2 51 0 6 1555 710 180 41 0 chr3 127254361 127254483 -32345300 + B1_Mus1 SINE Alu 10 136 -12 6 1555 246 32 0 0 chr3 127254483 127254514 -32345269 + (CAAA)n Simple_repeat Simple_repeat 1 31 0 7 1555 1065 102 7 21 chr3 127254802 127254942 -32344841 - B1_Mus1 SINE Alu -8 140 3 7 1555 268 260 87 29 chr3 127255182 127255285 -32344498 - LTR37A LTR ERV1 -272 154 46 7 1555 25 0 0 0 chr3 127255304 127255329 -32344454 + AT_rich Low_complexity Low_complexity 1 25 0 7 1555 23 33 0 0 chr3 127255834 127255864 -32343919 + GC_rich Low_complexity Low_complexity 1 30 0 7 1555 182 381 24 12 chr3 127256808 127256893 -32342890 - MER5A DNA MER1_type -31 158 73 7 1555 213 273 0 68 chr3 127257094 127257153 -32342630 + PB1 SINE Alu 3 57 -70 7 1555 767 275 99 75 chr3 127257350 127257461 -32342322 + MER2 DNA MER2_type 2 121 -224 7 1555 559 228 19 70 chr3 127257461 127257617 -32342166 - B1_Mur2 SINE Alu -1 148 1 7 1555 767 275 99 75 chr3 127257617 127257839 -32341944 + MER2 DNA MER2_type 122 343 -2 7 1555 886 40 16 7 chr3 127258347 127258474 -32341309 - B1_Mus1 SINE Alu 0 148 21 7 1555 251 308 76 17 chr3 127258489 127258608 -32341175 - Charlie1b DNA MER1_type -258 265 140 7 1555 207 0 0 0 chr3 127258866 127258889 -32340894 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 7 1555 300 243 71 0 chr3 127258896 127258966 -32340817 - ID4_ SINE ID -1 82 8 7 1555 881 50 350 0 chr3 127259320 127259460 -32340323 + B2_Mm2 SINE B2 2 190 -5 7 1555 196 243 93 13 chr3 127259581 127259656 -32340127 - MIRb SINE MIR -89 179 99 7 1555 800 150 71 0 chr3 127259721 127259861 -32339922 - B1_Mur4 SINE Alu 0 150 1 7 1555 1182 122 21 16 chr3 127259872 127260064 -32339719 - B2_Mm2 SINE B2 0 195 3 7 1555 612 112 43 0 chr3 127260231 127260347 -32339436 - URR1B DNA MER1_type 0 225 105 7 1555 830 180 32 53 chr3 127260458 127260646 -32339137 - B2_Mm2 SINE B2 -10 185 2 7 1555 1162 95 0 0 chr3 127260701 127260848 -32338935 + B1_Mus1 SINE Alu 2 148 0 7 1555 1191 105 5 27 chr3 127260927 127261113 -32338670 - B2_Mm2 SINE B2 -5 190 9 7 1555 570 234 44 66 chr3 127261140 127261238 -32338545 - B3A SINE B2 -64 134 43 7 1555 910 180 31 31 chr3 127261238 127261433 -32338350 - B2_Mm2 SINE B2 0 195 1 7 1555 570 234 44 66 chr3 127261433 127261471 -32338312 - B3A SINE B2 -156 42 1 7 1555 197 33 33 0 chr3 127261488 127261518 -32338265 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 7 1555 1124 75 7 46 chr3 127261525 127261678 -32338105 - B1_Mm SINE Alu 0 147 1 7 1555 1742 26 0 5 chr3 127261697 127261891 -32337892 - B2_Mm1a SINE B2 0 193 1 7 1555 555 281 153 46 chr3 127262020 127262281 -32337502 - B4A SINE B4 -3 289 1 7 1555 267 333 0 0 chr3 127262869 127262947 -32336836 - ID4 SINE ID -3 80 3 7 1555 26 50 0 0 chr3 127263447 127263487 -32336296 + AT_rich Low_complexity Low_complexity 1 40 0 7 1555 25 65 0 0 chr3 127264151 127264197 -32335586 + AT_rich Low_complexity Low_complexity 1 46 0 7 1555 307 85 33 153 chr3 127264265 127264348 -32335435 + L1_Mus2 LINE L1 6506 6566 0 7 1555 416 289 30 20 chr3 127266699 127266798 -32332985 + ID_B1 SINE B4 90 189 -35 7 1555 747 159 71 0 chr3 127267456 127267582 -32332201 - B1_Mus2 SINE Alu -1 146 12 7 1555 475 230 82 7 chr3 127267583 127267748 -32332035 + B3A SINE B2 3 181 -14 7 1555 21 36 0 0 chr3 127267974 127268002 -32331781 + AT_rich Low_complexity Low_complexity 1 28 0 7 1555 1156 131 6 44 chr3 127268002 127268185 -32331598 + B2_Mm1t SINE B2 2 177 -16 7 1555 271 138 349 29 chr3 127268219 127268325 -32331458 + B2_Mm2 SINE B2 47 186 -9 7 1555 1049 138 77 6 chr3 127268326 127268494 -32331289 - B2_Mm2 SINE B2 -14 181 2 7 1555 260 118 22 56 chr3 127268515 127268528 -32331255 + A-rich Low_complexity Low_complexity 2 14 0 7 1555 1417 65 37 27 chr3 127268528 127268716 -32331067 - B2_Mm2 SINE B2 -5 190 1 7 1555 260 118 22 56 chr3 127268716 127268744 -32331039 + A-rich Low_complexity Low_complexity 15 39 0 7 1555 1274 61 0 0 chr3 127268744 127268891 -32330892 + B1_Mus2 SINE Alu 1 147 0 7 1555 260 118 22 56 chr3 127268891 127268938 -32330845 + A-rich Low_complexity Low_complexity 40 87 0 7 1555 834 297 189 3 chr3 127269103 127269478 -32330305 + MER82 DNA MER2_type 63 507 -146 7 1555 269 241 50 12 chr3 127269980 127270060 -32329723 + B3A SINE B2 2 84 -114 7 1555 711 234 39 0 chr3 127270147 127270275 -32329508 - B1_Mur4 SINE Alu -3 147 15 7 1555 541 269 29 22 chr3 127270153 127270290 -32329493 - ID_B1 SINE B4 -9 215 78 7 194 1359 158 82 82 chr3 127270788 127271106 -32328677 - MTC LTR MaLR 0 421 104 7 1556 659 154 176 16 chr3 127271131 127271256 -32328527 - MTC LTR MaLR -81 340 196 7 1556 722 135 82 8 chr3 127271250 127271384 -32328399 - B1_Mur4 SINE Alu -1 149 6 7 1556 666 239 28 14 chr3 127271385 127271516 -32328267 - MTC LTR MaLR -211 210 78 7 1556 1130 134 70 0 chr3 127271516 127271702 -32328081 - URR1B DNA MER1_type 0 225 27 7 1556 910 103 78 42 chr3 127271702 127271844 -32327939 + B1_Mus1 SINE Alu 2 148 0 7 1556 521 183 0 71 chr3 127271874 127271986 -32327797 - MTC LTR MaLR -317 104 1 7 1556 6190 158 59 19 chr3 127271986 127272158 -32327625 - MTC-int LTR MaLR 0 1258 1087 7 1556 1433 45 49 22 chr3 127272158 127272341 -32327442 - B2_Mm2 SINE B2 -5 190 3 7 1556 6190 158 59 19 chr3 127272341 127273332 -32326451 - MTC-int LTR MaLR -172 1086 49 7 1556 754 170 66 33 chr3 127273325 127273477 -32326306 - MTC LTR MaLR -264 157 1 7 1556 360 331 26 32 chr3 127273514 127273670 -32326113 - MER119 DNA MER1_type 0 583 429 7 1556 393 240 28 57 chr3 127273855 127273961 -32325822 + B1F2 SINE Alu 39 141 -8 7 1556 610 170 289 0 chr3 127273973 127274132 -32325651 + B3 SINE B2 3 207 -9 7 1556 810 61 282 17 chr3 127274146 127274263 -32325520 - B1_Mus1 SINE Alu 0 148 1 7 1556 22 0 0 0 chr3 127274271 127274293 -32325490 + AT_rich Low_complexity Low_complexity 1 22 0 7 1556 2218 24 4 0 chr3 127274297 127274544 -32325239 + L1Md_F2 LINE L1 6334 6581 -1 7 1556 461 278 113 0 chr3 127275118 127275233 -32324550 + B3 SINE B2 21 148 -68 7 1556 213 294 85 21 chr3 127275867 127275961 -32323822 - L2a LINE L2 -18 3408 3309 7 1556 1311 41 0 0 chr3 127276271 127276418 -32323365 - B1_Mus2 SINE Alu 0 147 1 7 1556 229 226 0 86 chr3 127276439 127276497 -32323286 - RSINE1 SINE B4 -3 162 110 7 1556 852 136 84 0 chr3 127276506 127276661 -32323122 - B2_Mm2 SINE B2 0 195 28 7 1556 216 0 0 0 chr3 127276664 127276688 -32323095 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 7 1556 449 204 14 4 chr3 127276688 127276786 -32322997 - B1_Mus2 SINE Alu -12 108 10 7 1556 275 250 13 40 chr3 127276729 127276804 -32322979 - B4A SINE B4 -140 152 80 7 1556 2190 215 109 23 chr3 127276828 127277343 -32322440 - Lx5 LINE L1 -15 7035 6477 7 1556 348 226 149 18 chr3 127277678 127277789 -32321994 + B1F SINE Alu 2 128 -21 7 1556 694 254 151 0 chr3 127278085 127278270 -32321513 + B3 SINE B2 1 213 -3 7 1556 1266 48 0 0 chr3 127278286 127278432 -32321351 + B1_Mus2 SINE Alu 2 147 0 7 1556 234 0 0 0 chr3 127278439 127278465 -32321318 + (A)n Simple_repeat Simple_repeat 1 26 0 7 1556 1324 113 11 16 chr3 127278491 127278680 -32321103 - B2_Mm2 SINE B2 -7 188 1 7 1556 275 267 45 34 chr3 127278774 127278863 -32320920 - BC1_Mm scRNA scRNA -54 98 9 7 1556 335 233 99 57 chr3 127278871 127279012 -32320771 - B1F1 SINE Alu 0 149 3 7 1556 1008 127 0 0 chr3 127279060 127279225 -32320558 + (TG)n Simple_repeat Simple_repeat 1 165 0 7 1556 677 235 78 7 chr3 127279225 127279379 -32320404 - B3 SINE B2 -50 166 2 7 1556 451 241 14 0 chr3 127279396 127279537 -32320246 + (TA)n Simple_repeat Simple_repeat 2 144 0 7 1556 702 205 25 0 chr3 127279544 127279666 -32320117 - B1_Mus1 SINE Alu -23 125 1 7 1556 325 263 8 116 chr3 127279666 127279696 -32320087 - MT2B LTR ERVL -447 154 139 7 1556 360 306 52 56 chr3 127279696 127279758 -32320025 - L1MA5 LINE L1 -28 6272 6210 7 1556 5117 42 17 0 chr3 127279758 127280335 -32319448 - LTRIS_Mus LTR ERV1 0 587 1 7 1556 360 306 52 56 chr3 127280335 127280402 -32319381 - L1MA5 LINE L1 -91 6209 6138 7 1556 246 32 0 0 chr3 127280402 127280433 -32319350 + (TTCA)n Simple_repeat Simple_repeat 3 33 0 7 1556 551 331 0 0 chr3 127280433 127280572 -32319211 - B1_Mur1 SINE Alu -9 140 2 7 1556 360 306 52 56 chr3 127280572 127280672 -32319111 - L1MA5 LINE L1 -163 6137 6044 7 1556 216 0 0 0 chr3 127280731 127280755 -32319028 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 7 1556 437 324 11 64 chr3 127280764 127280952 -32318831 - B3A SINE B2 -18 180 3 7 1556 246 81 0 0 chr3 127280974 127281011 -32318772 + (TAG)n Simple_repeat Simple_repeat 3 39 0 7 1556 459 286 9 35 chr3 127281016 127281132 -32318651 - B1F SINE Alu -36 113 1 7 1556 349 282 10 0 chr3 127281171 127281274 -32318509 - L1MA5 LINE L1 -835 5468 5365 7 1556 269 278 28 0 chr3 127281525 127281597 -32318186 - ID2 SINE ID 0 83 10 7 1556 378 261 51 46 chr3 127281597 127281814 -32317969 - L1MA5 LINE L1 -839 5304 5087 7 1556 368 330 0 0 chr3 127281873 127281985 -32317798 - L2 LINE L2 -1396 2023 1912 7 1556 261 300 22 22 chr3 127282034 127282056 -32317727 - ID_B1 SINE B4 -128 96 5 7 1556 296 271 14 0 chr3 127282056 127282126 -32317657 - ID2 SINE ID -8 75 5 7 1556 203 311 307 15 chr3 127282216 127282558 -32317225 - L2a LINE L2 -75 3351 2910 7 1556 614 237 142 19 chr3 127282731 127282886 -32316897 - B3 SINE B2 -42 174 1 7 1556 662 210 43 21 chr3 127282886 127283027 -32316756 - B1_Mur1 SINE Alu -2 147 4 7 1556 672 242 370 7 chr3 127283061 127283344 -32316439 + MTD LTR MaLR 36 419 0 7 1556 281 133 0 0 chr3 127283666 127283711 -32316072 - 5S rRNA rRNA -76 45 1 7 1556 275 146 21 0 chr3 127283715 127283763 -32316020 - 5S rRNA rRNA -72 49 1 7 1556 281 133 0 0 chr3 127283770 127283815 -32315968 - 5S rRNA rRNA -76 45 1 7 1556 283 125 21 0 chr3 127283819 127283867 -32315916 - 5S rRNA rRNA -72 49 1 7 1556 281 133 0 0 chr3 127283874 127283919 -32315864 - 5S rRNA rRNA -76 45 1 7 1556 281 133 0 0 chr3 127283926 127283971 -32315812 - 5S rRNA rRNA -76 45 1 7 1556 281 133 0 0 chr3 127283978 127284023 -32315760 - 5S rRNA rRNA -76 45 1 7 1556 281 133 0 0 chr3 127284030 127284075 -32315708 - 5S rRNA rRNA -76 45 1 7 1556 281 133 0 0 chr3 127284082 127284127 -32315656 - 5S rRNA rRNA -76 45 1 7 1556 1289 54 0 0 chr3 127284961 127285108 -32314675 + B1_Mus2 SINE Alu 1 147 0 7 1556 285 98 0 0 chr3 127285183 127285224 -32314559 + (A)n Simple_repeat Simple_repeat 1 41 0 7 1556 225 281 111 30 chr3 127285243 127285342 -32314441 + B4 SINE B4 77 183 -109 7 1556 316 153 121 51 chr3 127285264 127285348 -32314435 + PB1D10 SINE Alu 12 95 -22 8 1556 222 91 0 0 chr3 127285482 127285515 -32314268 + (GTTTG)n Simple_repeat Simple_repeat 2 34 0 8 1556 1318 35 0 0 chr3 127285535 127285680 -32314103 - B1_Mus1 SINE Alu 0 148 4 8 1556 264 131 97 32 chr3 127286121 127286183 -32313600 + MIRc SINE MIR 87 155 -113 8 1556 1320 88 0 6 chr3 127287965 127288147 -32311636 - B2_Mm2 SINE B2 -6 189 9 8 1556 213 39 0 0 chr3 127288508 127288534 -32311249 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 8 1556 676 292 63 19 chr3 127288587 127288793 -32310990 + B3 SINE B2 2 216 0 8 1556 1339 27 0 0 chr3 127290016 127290163 -32309620 - B1_Mm SINE Alu 0 147 1 8 1556 596 154 175 35 chr3 127290233 127290347 -32309436 - B3 SINE B2 -86 130 1 8 1556 967 285 9 0 chr3 127290373 127290587 -32309196 - B3 SINE B2 0 216 1 8 1556 738 101 0 0 chr3 127291342 127291451 -32308332 + (TTCC)n Simple_repeat Simple_repeat 4 112 0 8 1556 3133 132 131 68 chr3 127291744 127292393 -32307390 - RMER6C LTR ERVK 0 690 1 8 1556 609 275 84 0 chr3 127292676 127292843 -32306940 - B3A SINE B2 -17 181 1 8 1556 30 0 0 0 chr3 127293187 127293217 -32306566 + AT_rich Low_complexity Low_complexity 1 30 0 8 1556 234 277 165 19 chr3 127294062 127294165 -32305618 - PB1D9 SINE Alu -2 118 1 8 1556 282 294 148 10 chr3 127294178 127294381 -32305402 - L1M5 LINE L1 -1349 4797 4567 8 1556 559 274 149 34 chr3 127295239 127295534 -32304249 - RLTR15 LTR ERVK -30 329 1 8 1556 268 311 54 7 chr3 127295540 127295689 -32304094 - L1M5 LINE L1 -3222 2924 2769 8 1556 1319 89 39 0 chr3 127295690 127295869 -32303914 - B2_Mm1t SINE B2 -7 186 1 8 1556 319 265 139 30 chr3 127295901 127296002 -32303781 - PB1D10 SINE Alu -1 116 5 8 1556 183 129 0 0 chr3 127296397 127296428 -32303355 + (T)n Simple_repeat Simple_repeat 1 31 0 8 1556 1293 27 0 13 chr3 127296428 127296577 -32303206 - B1_Mm SINE Alu 0 147 1 8 1556 180 0 0 0 chr3 127296637 127296657 -32303126 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 8 1556 1108 110 0 0 chr3 127296657 127296802 -32302981 - B1_Mus1 SINE Alu -2 146 2 8 1556 861 201 0 14 chr3 127296901 127297047 -32302736 - B1_Mur1 SINE Alu 0 149 6 8 1556 237 368 85 8 chr3 127297074 127297089 -32302694 - RSINE1 SINE B4 -36 129 3 8 1556 369 293 0 39 chr3 127297089 127297192 -32302591 - B3 SINE B2 -116 100 2 8 1556 289 326 10 10 chr3 127297397 127297493 -32302290 - B4 SINE B4 -173 119 24 8 1556 656 200 42 28 chr3 127297508 127297652 -32302131 - B1_Mus1 SINE Alu -1 147 2 8 1556 635 243 85 0 chr3 127298452 127298629 -32301154 + L1MA9 LINE L1 6052 6243 -69 8 1556 1855 221 60 18 chr3 127299105 127299488 -32300295 - MTD LTR MaLR -13 406 8 8 1556 807 254 53 14 chr3 127299563 127299771 -32300012 + B3 SINE B2 1 216 0 8 1556 859 186 119 11 chr3 127300052 127300237 -32299546 - B3 SINE B2 -10 206 2 8 1556 489 211 0 0 chr3 127300446 127300569 -32299214 + CT-rich Low_complexity Low_complexity 4 126 0 8 1556 821 148 40 1 chr3 127300583 127300745 -32299038 - B2_Mm2 SINE B2 -33 183 1 8 1556 428 260 0 39 chr3 127300862 127300966 -32298817 - PB1D10 SINE Alu -1 116 17 8 1556 294 333 10 29 chr3 127300881 127300983 -32298800 - ID_B1 SINE B4 -45 179 80 8 1556 441 313 0 0 chr3 127301000 127301099 -32298684 - B1_Mur3 SINE Alu -50 99 1 8 1556 280 355 40 24 chr3 127301099 127301132 -32298651 - B4 SINE B4 -203 89 55 8 1556 1377 211 182 14 chr3 127301788 127302135 -32297648 - MTD LTR MaLR -14 405 1 8 1556 318 200 56 14 chr3 127302244 127302315 -32297468 + ID2 SINE ID 10 83 0 8 1556 917 188 58 42 chr3 127302517 127302706 -32297077 - B2_Mm2 SINE B2 -3 192 1 8 1556 829 236 35 20 chr3 127302737 127302940 -32296843 - B3 SINE B2 -10 206 1 8 1556 653 286 24 6 chr3 127303113 127303282 -32296501 + ID_B1 SINE B4 42 213 -11 8 1556 256 254 141 0 chr3 127303357 127303428 -32296355 - ID4_ SINE ID -2 81 1 8 1556 22 0 0 0 chr3 127303522 127303544 -32296239 + AT_rich Low_complexity Low_complexity 1 22 0 8 1556 285 303 105 8 chr3 127304204 127304337 -32295446 + MIR SINE MIR 12 157 -105 8 1556 806 78 9 0 chr3 127304375 127304490 -32295293 + (TCCC)n Simple_repeat Simple_repeat 2 117 0 8 1556 433 200 9 18 chr3 127304508 127304620 -32295163 + CT-rich Low_complexity Low_complexity 4 114 0 8 1556 1019 172 232 4 chr3 127304639 127304902 -32294881 - Lx5 LINE L1 0 7050 6728 8 1556 1118 114 7 0 chr3 127304906 127305055 -32294728 - B1_Mur4 SINE Alu 0 150 1 8 1556 350 276 37 73 chr3 127305763 127305920 -32293863 + LTR40c LTR ERVL 113 320 -199 8 1556 1073 62 90 0 chr3 127306011 127306155 -32293628 + B2_Mm2 SINE B2 2 158 -37 8 1556 192 77 0 0 chr3 127306156 127306182 -32293601 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 8 1556 1056 152 33 14 chr3 127306846 127307134 -32292649 - RMER6A LTR ERVK -412 344 6 8 1556 510 291 82 43 chr3 127307541 127307859 -32291924 - MTEa LTR MaLR -34 345 22 8 1556 1110 194 23 28 chr3 127308174 127308391 -32291392 - B3 SINE B2 0 216 1 8 1556 192 314 71 0 chr3 127308393 127308463 -32291320 + MIRc SINE MIR 74 148 -120 8 1556 1079 185 245 18 chr3 127308591 127308877 -32290906 + ORR1D2 LTR MaLR 20 370 0 8 1556 433 290 0 0 chr3 127309088 127309195 -32290588 + PB1D10 SINE Alu 3 109 -8 8 1556 7929 61 6 1 chr3 127309411 127310836 -32288947 - L1Md_F2 LINE L1 0 6582 5153 8 1556 292 331 57 88 chr3 127310973 127311132 -32288651 + B4 SINE B4 67 220 -72 8 1556 667 243 14 0 chr3 127310998 127311138 -32288645 + B1F2 SINE Alu 8 149 0 8 1556 743 128 125 71 chr3 127311142 127311310 -32288473 + B2_Mm2 SINE B2 2 178 -17 8 1556 1558 53 21 5 chr3 127312460 127312648 -32287135 + B2_Mm2 SINE B2 1 191 -4 8 1556 3739 62 9 4 chr3 127312815 127313352 -32286431 + L1_Mus2 LINE L1 5425 5964 -602 8 1556 23 0 0 0 chr3 127313604 127313627 -32286156 + AT_rich Low_complexity Low_complexity 1 23 0 8 1556 598 274 14 14 chr3 127313721 127313869 -32285914 + B1_Mur3 SINE Alu 2 149 0 8 1556 360 254 11 0 chr3 127314063 127314145 -32285638 - PB1D10 SINE Alu -17 103 17 8 1556 401 228 84 56 chr3 127314572 127314679 -32285104 + PB1D7 SINE Alu 3 112 -8 8 1556 547 215 52 25 chr3 127315668 127315861 -32283922 - B3A SINE B2 -2 193 3 8 1556 829 233 92 26 chr3 127315861 127316080 -32283703 - B4A SINE B4 -57 235 2 8 1556 43 47 0 0 chr3 127316685 127316749 -32283034 + AT_rich Low_complexity Low_complexity 1 64 0 8 1556 355 292 13 8 chr3 127316983 127317122 -32282661 - L1MA4 LINE L1 -199 5957 5814 8 1556 1511 69 0 11 chr3 127317164 127317355 -32282428 - B2_Mm2 SINE B2 -6 189 1 8 1556 251 167 56 0 chr3 127317356 127317410 -32282373 - L1_Rod LINE L1 -85 5762 5706 8 1556 498 194 256 30 chr3 127317415 127317548 -32282235 - RSINE1 SINE B4 0 165 3 8 1556 321 289 0 20 chr3 127317558 127317657 -32282126 - L1MB4 LINE L1 -127 6053 5957 8 1556 456 176 0 0 chr3 127317803 127317877 -32281906 - B1_Mus2 SINE Alu -65 82 9 8 1556 303 256 24 12 chr3 127317804 127317887 -32281896 - ID_B1 SINE B4 -63 161 78 8 1556 319 270 120 13 chr3 127320287 127320437 -32279346 - L1ME4a LINE L1 -7 6117 5952 8 1556 500 233 32 52 chr3 127320678 127320832 -32278951 + RSINE1 SINE B4 3 153 -12 8 1556 393 22 0 0 chr3 127320995 127321041 -32278742 + (TG)n Simple_repeat Simple_repeat 2 47 0 8 1556 1348 149 9 26 chr3 127321049 127321277 -32278506 - Lx4B LINE L1 -312 6746 6523 8 1556 665 164 186 12 chr3 127321272 127321433 -32278350 + Lx4B LINE L1 6083 6271 -787 8 1556 1077 118 0 0 chr3 127321436 127321588 -32278195 + Lx5 LINE L1 6354 6505 -545 8 1556 875 165 0 6 chr3 127321588 127321765 -32278018 + CT-rich Low_complexity Low_complexity 1 176 0 8 1556 663 115 9 9 chr3 127321817 127321829 -32277954 - B1_Mur4 SINE Alu 0 150 139 8 1556 246 32 0 0 chr3 127321829 127321860 -32277923 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 8 1556 663 115 9 9 chr3 127321860 127321952 -32277831 - B1_Mur4 SINE Alu -12 138 46 8 1556 269 191 124 52 chr3 127322096 127322214 -32277569 + B3 SINE B2 29 216 0 8 1556 1511 274 91 60 chr3 127322214 127322349 -32277434 + Lx8 LINE L1 4358 4540 -1603 8 1556 1100 64 185 0 chr3 127322349 127322506 -32277277 - B2_Mm1a SINE B2 -7 186 1 8 1556 1511 273 91 59 chr3 127322506 127322949 -32276834 + Lx8 LINE L1 4541 4994 -1149 8 1556 1092 113 44 33 chr3 127322949 127323132 -32276651 + B2_Mm2 SINE B2 2 186 -9 8 1556 1511 273 91 59 chr3 127323132 127323393 -32276390 + L1M2 LINE L1 4995 5283 -860 8 1556 360 228 263 0 chr3 127323393 127323507 -32276276 + RSINE1 SINE B4 5 148 -17 8 1556 1511 291 91 74 chr3 127323507 127323787 -32275996 + Lx8 LINE L1 5223 5458 -389 8 1556 854 128 20 41 chr3 127323787 127323934 -32275849 - B1_Mur3 SINE Alu -1 148 5 8 1556 1052 307 91 89 chr3 127323934 127323983 -32275800 + Lx8 LINE L1 5459 5507 -340 8 1556 1394 87 6 0 chr3 127323983 127324156 -32275627 + B2_Mm1t SINE B2 2 175 -18 8 1556 1052 309 94 84 chr3 127324156 127324494 -32275289 + Lx8 LINE L1 5508 5909 -1564 8 1556 1451 75 32 0 chr3 127324759 127324945 -32274838 + B2_Mm1t SINE B2 2 193 0 8 1556 631 90 10 10 chr3 127325963 127326064 -32273719 + (TCC)n Simple_repeat Simple_repeat 3 103 0 8 1556 1188 223 0 5 chr3 127326081 127326288 -32273495 + B3 SINE B2 1 206 -10 8 1556 1199 66 0 0 chr3 127326315 127326452 -32273331 + B1_Mm SINE Alu 2 138 -9 8 1556 266 278 19 0 chr3 127326893 127326947 -32272836 + ID4 SINE ID 15 69 -14 9 1556 601 192 0 27 chr3 127327025 127327145 -32272638 - PB1D9 SINE Alu -23 126 17 9 1556 240 176 0 89 chr3 127327100 127327156 -32272627 + YREP_Mm Unknown Unknown 256 306 -1506 9 1556 216 0 0 0 chr3 127328093 127328117 -32271666 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 9 1556 24 0 0 0 chr3 127329144 127329168 -32270615 + GC_rich Low_complexity Low_complexity 1 24 0 9 1556 326 162 14 0 chr3 127329378 127329452 -32270331 + (TA)n Simple_repeat Simple_repeat 2 76 0 9 1556 954 90 0 0 chr3 127332207 127332341 -32267442 + (TTTC)n Simple_repeat Simple_repeat 4 137 0 9 1556 810 102 0 0 chr3 127332343 127332461 -32267322 + (TTC)n Simple_repeat Simple_repeat 2 119 0 9 1556 656 245 14 7 chr3 127332525 127332665 -32267118 + B1_Mur1 SINE Alu 2 142 -7 9 1556 186 43 0 0 chr3 127332930 127332953 -32266830 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 9 1556 787 222 18 98 chr3 127333086 127333311 -32266472 - B3 SINE B2 -5 211 5 9 1556 236 53 26 0 chr3 127333609 127333647 -32266136 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 9 1556 273 29 0 0 chr3 127335078 127335112 -32264671 + (TTTTA)n Simple_repeat Simple_repeat 1 34 0 9 1556 263 335 0 58 chr3 127335802 127335992 -32263791 + G-rich Low_complexity Low_complexity 2 180 0 9 1556 25 0 0 0 chr3 127336562 127336587 -32263196 + GC_rich Low_complexity Low_complexity 1 25 0 9 1556 203 254 17 0 chr3 127337447 127337506 -32262277 + CT-rich Low_complexity Low_complexity 5 64 0 9 1556 507 165 51 10 chr3 127338792 127338890 -32260893 + B1_Mur1 SINE Alu 47 148 -1 9 1556 568 174 86 17 chr3 127339065 127339182 -32260601 + B1_Mur4 SINE Alu 6 130 -20 9 1556 812 137 0 7 chr3 127339204 127339344 -32260439 + (GAAA)n Simple_repeat Simple_repeat 1 139 0 9 1556 720 164 69 28 chr3 127339415 127339559 -32260224 - B1_Mur4 SINE Alu 0 150 1 9 1556 2438 78 3 0 chr3 127339588 127339910 -32259873 - L1_Mus2 LINE L1 0 6566 6244 9 1556 505 210 338 0 chr3 127340435 127340592 -32259191 - B3 SINE B2 -6 210 1 9 1556 242 317 0 0 chr3 127340702 127340784 -32258999 - ID4_ SINE ID 0 83 2 9 1556 420 228 142 51 chr3 127341382 127341558 -32258225 + B4A SINE B4 6 197 -95 9 1556 523 174 16 50 chr3 127341568 127341581 -32258202 - PB1D7 SINE Alu -2 118 106 9 1556 495 0 0 0 chr3 127341581 127341636 -32258147 + (TA)n Simple_repeat Simple_repeat 2 56 0 9 1556 622 142 10 3 chr3 127341636 127341743 -32258040 - B1_Mur4 SINE Alu -15 105 2 9 1556 833 198 118 25 chr3 127341747 127341938 -32257845 - Lx9 LINE L1 -12 7632 7419 9 1556 423 0 0 0 chr3 127341938 127341985 -32257798 + (TATG)n Simple_repeat Simple_repeat 4 50 0 9 1556 833 198 118 25 chr3 127341985 127342031 -32257752 - Lx9 LINE L1 -226 7418 7373 9 1556 478 274 0 0 chr3 127342031 127342144 -32257639 + Lx9 LINE L1 7201 7313 -331 9 1556 513 0 0 0 chr3 127342208 127342265 -32257518 + (TC)n Simple_repeat Simple_repeat 1 57 0 9 1556 522 91 0 0 chr3 127342265 127342341 -32257442 + (CA)n Simple_repeat Simple_repeat 1 77 0 9 1556 216 67 0 0 chr3 127344586 127344616 -32255167 + (T)n Simple_repeat Simple_repeat 1 30 0 9 1556 789 107 30 15 chr3 127344673 127344806 -32254977 + B1_Mus2 SINE Alu 12 146 -1 9 1556 423 0 0 0 chr3 127344812 127344859 -32254924 + (CAA)n Simple_repeat Simple_repeat 2 48 0 9 1556 216 0 0 0 chr3 127345960 127345984 -32253799 + (T)n Simple_repeat Simple_repeat 1 24 0 9 1556 267 176 0 0 chr3 127346886 127346937 -32252846 + B1F SINE Alu 99 149 0 9 1556 289 247 83 64 chr3 127347107 127347263 -32252520 - RSINE1 SINE B4 -4 161 3 9 1556 279 164 0 18 chr3 127347274 127347330 -32252453 + B3A SINE B2 2 56 -142 9 1556 627 261 19 48 chr3 127347359 127347594 -32252189 - L1MB2 LINE L1 -22 6149 5921 9 1556 228 111 0 0 chr3 127347702 127347738 -32252045 + (CACCC)n Simple_repeat Simple_repeat 5 40 0 9 1556 198 208 0 0 chr3 127348094 127348142 -32251641 + A-rich Low_complexity Low_complexity 1 48 0 9 1556 230 116 0 23 chr3 127348187 127348231 -32251552 + (TTTC)n Simple_repeat Simple_repeat 3 45 0 9 1556 404 236 0 22 chr3 127348638 127348729 -32251054 - B1_Mm SINE Alu -48 99 11 9 1556 302 232 0 136 chr3 127348654 127348764 -32251019 - MT2B LTR ERVL -361 240 146 9 1556 368 220 85 32 chr3 127348778 127348872 -32250911 + RSINE1 SINE B4 2 100 -65 9 1556 284 261 18 12 chr3 127350157 127350255 -32249528 + AluG_3 SINE Alu 138 220 -91 9 1556 1170 63 0 0 chr3 127350290 127350433 -32249350 + B1_Mus2 SINE Alu 2 144 -3 9 1556 972 169 0 0 chr3 127350438 127350616 -32249167 + GA-rich Low_complexity Low_complexity 3 180 0 9 1556 623 62 38 0 chr3 127350777 127350857 -32248926 + Lx LINE L1 6134 6216 -438 9 1556 562 119 11 21 chr3 127350858 127350952 -32248831 + B1_Mm SINE Alu 42 134 -13 9 1556 223 28 0 53 chr3 127350954 127350992 -32248791 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 9 1556 2886 267 138 32 chr3 127351060 127351313 -32248470 - Lx8 LINE L1 -2 7471 7144 9 1556 1620 42 5 0 chr3 127351313 127351504 -32248279 - B2_Mm1t SINE B2 0 193 2 9 1556 2886 267 138 32 chr3 127351504 127351676 -32248107 - Lx8 LINE L1 -330 7143 6952 9 1556 252 0 0 0 chr3 127351676 127351704 -32248079 + (TG)n Simple_repeat Simple_repeat 2 29 0 9 1556 2886 267 138 32 chr3 127351704 127352310 -32247473 - Lx8 LINE L1 -522 6951 6329 9 1556 42 0 0 0 chr3 127352333 127352375 -32247408 + AT_rich Low_complexity Low_complexity 1 42 0 9 1556 1154 81 0 0 chr3 127352380 127352528 -32247255 - B1_Mus1 SINE Alu 0 148 1 9 1556 1101 77 21 0 chr3 127352715 127352858 -32246925 - B1_Mm SINE Alu 0 147 2 9 1556 243 0 0 0 chr3 127353061 127353088 -32246695 + (TG)n Simple_repeat Simple_repeat 1 27 0 9 1556 473 300 99 52 chr3 127353133 127353186 -32246597 - L1MB4 LINE L1 0 6180 6134 9 1556 1214 177 64 0 chr3 127353186 127353389 -32246394 - B3 SINE B2 0 216 1 9 1556 473 300 99 52 chr3 127353389 127353659 -32246124 - L1MB4 LINE L1 -47 6133 5842 9 1556 320 215 15 0 chr3 127353662 127353727 -32246056 + RSINE1 SINE B4 11 76 -89 9 1556 348 43 0 0 chr3 127353767 127353813 -32245970 + (TC)n Simple_repeat Simple_repeat 2 47 0 9 1556 249 174 0 42 chr3 127354199 127354247 -32245536 + B4 SINE B4 34 79 -213 9 1556 208 290 14 14 chr3 127354419 127354489 -32245294 + (CATATA)n Simple_repeat Simple_repeat 3 72 0 9 1556 180 0 0 0 chr3 127354500 127354520 -32245263 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 9 1556 703 142 0 0 chr3 127354539 127354652 -32245131 + B1_Mur1 SINE Alu 25 137 -12 9 1556 261 139 0 0 chr3 127355026 127355069 -32244714 + (T)n Simple_repeat Simple_repeat 1 43 0 9 1556 249 310 0 0 chr3 127355295 127355366 -32244417 - L2b LINE L2 0 3375 3305 9 1556 280 320 0 0 chr3 127355636 127355733 -32244050 + GA-rich Low_complexity Low_complexity 1 97 0 9 1556 234 0 0 0 chr3 127355743 127355769 -32244014 + (GA)n Simple_repeat Simple_repeat 1 26 0 9 1556 260 250 0 86 chr3 127356016 127356121 -32243662 - RMER1C Other Other -5 1337 1242 9 1556 1880 314 111 52 chr3 127356055 127356497 -32243286 - Lx7 LINE L1 -29 7444 6952 9 1556 183 80 0 0 chr3 127356497 127356522 -32243261 + (TG)n Simple_repeat Simple_repeat 2 26 0 9 1556 1880 299 114 58 chr3 127356522 127357035 -32242748 - Lx7 LINE L1 -745 6951 6414 9 1556 3271 135 62 21 chr3 127357035 127357353 -32242430 - RMER4B LTR ERVK 0 585 241 9 1556 1545 53 16 0 chr3 127357353 127357541 -32242242 - B2_Mm2 SINE B2 -3 192 2 9 1556 3271 135 62 21 chr3 127357541 127357784 -32241999 - RMER4B LTR ERVK -345 240 1 9 1556 1880 299 114 58 chr3 127357784 127357912 -32241871 - Lx7 LINE L1 -1283 6413 6280 9 1556 2135 107 6 74 chr3 127357912 127358265 -32241518 + ORR1A4 LTR MaLR 1 329 0 9 1556 1880 299 114 58 chr3 127358265 127358384 -32241399 - Lx7 LINE L1 -1417 6279 6176 9 1556 32 86 0 0 chr3 127358385 127358466 -32241317 + AT_rich Low_complexity Low_complexity 1 81 0 9 1556 498 279 74 25 chr3 127358467 127358710 -32241073 - Lx7 LINE L1 -1505 6191 5937 9 1556 1828 167 142 28 chr3 127358762 127359186 -32240597 + RMER16 LTR ERVK 62 533 0 9 1556 343 176 0 21 chr3 127359221 127359314 -32240469 + (TTTA)n Simple_repeat Simple_repeat 3 93 0 9 1556 2148 271 53 158 chr3 127359314 127359710 -32240073 - Lx7 LINE L1 -11 5869 5429 9 1556 287 25 25 0 chr3 127359710 127359750 -32240033 + (TTG)n Simple_repeat Simple_repeat 2 42 0 9 1556 2148 271 53 158 chr3 127359750 127359948 -32239835 - Lx7 LINE L1 -452 5428 5253 9 1556 368 185 239 0 chr3 127359948 127360040 -32239743 - B3 SINE B2 -99 117 4 9 1556 2148 271 53 158 chr3 127360040 127360741 -32239042 - Lx7 LINE L1 -452 5252 4629 9 1556 272 250 50 50 chr3 127360870 127360950 -32238833 + ID4_ SINE ID 4 83 0 9 1556 1294 116 4 57 chr3 127361665 127361893 -32237890 - Lx2 LINE L1 0 6997 6782 9 1556 546 287 49 60 chr3 127362238 127362423 -32237360 + B3A SINE B2 15 197 -1 9 1556 420 20 0 0 chr3 127362926 127362975 -32236808 + (CA)n Simple_repeat Simple_repeat 2 50 0 9 1556 461 179 24 97 chr3 127362983 127363107 -32236676 - B1_Mus2 SINE Alu -19 128 14 9 1556 229 243 125 9 chr3 127366176 127366288 -32233495 + MLT1F1 LTR MaLR 102 226 -353 9 1556 759 52 0 0 chr3 127366338 127366434 -32233349 + (GGA)n Simple_repeat Simple_repeat 1 96 0 9 1556 304 324 39 45 chr3 127366434 127366612 -32233171 + MLT1F1 LTR MaLR 312 488 -81 9 1556 415 237 218 34 chr3 127367347 127367526 -32232257 - RMER15 LTR ERVL -17 558 347 9 1556 2971 322 56 65 chr3 127367877 127368552 -32231231 + ORR1D2-int LTR MaLR 150 788 -792 9 1556 2565 138 212 53 chr3 127368552 127369006 -32230777 - RMER19C LTR ERVK 0 611 84 9 1556 1173 74 0 0 chr3 127369006 127369147 -32230636 + B1_Mus1 SINE Alu 1 141 -7 9 1556 819 53 0 0 chr3 127369147 127369260 -32230523 + (CAAAC)n Simple_repeat Simple_repeat 2 114 0 9 1556 2565 138 212 53 chr3 127369266 127369338 -32230445 - RMER19C LTR ERVK -528 83 2 9 1556 2971 231 48 48 chr3 127369338 127369589 -32230194 + ORR1D2-int LTR MaLR 666 908 -462 9 1556 1525 249 11 11 chr3 127369589 127369954 -32229829 - ORR1D2 LTR MaLR -3 367 3 9 1556 2971 240 49 50 chr3 127369954 127370420 -32229363 + ORR1D2-int LTR MaLR 909 1527 -53 9 1556 362 350 65 0 chr3 127370420 127370498 -32229285 + ORR1D2 LTR MaLR 1 84 -286 9 1556 270 0 0 0 chr3 127370498 127370528 -32229255 + (TGG)n Simple_repeat Simple_repeat 2 31 0 9 1556 362 350 65 0 chr3 127370528 127370635 -32229148 + ORR1D2 LTR MaLR 85 197 -173 9 1556 441 0 0 0 chr3 127371348 127371397 -32228386 + (TC)n Simple_repeat Simple_repeat 2 50 0 9 1556 3383 88 8 22 chr3 127371753 127372250 -32227533 - Lx LINE L1 -5 6649 6160 9 1556 254 203 78 0 chr3 127372253 127372317 -32227466 + L1M1 LINE L1 5795 5863 -437 9 1556 582 279 0 0 chr3 127372865 127373005 -32226778 + MTE2b LTR MaLR 1 140 -239 9 1556 304 289 92 110 chr3 127373470 127373742 -32226041 - MLT1I LTR MaLR -31 380 114 9 1556 192 200 0 0 chr3 127374098 127374138 -32225645 + (CATA)n Simple_repeat Simple_repeat 4 43 0 9 1556 213 385 37 0 chr3 127374460 127374595 -32225188 - L2a LINE L2 -61 3365 3226 1 1556 483 237 109 15 chr3 127374838 127374975 -32224808 - B3A SINE B2 -48 150 1 1 1556 2142 182 33 35 chr3 127376471 127376898 -32222885 + Lx5 LINE L1 6625 7050 0 1 1556 1270 102 16 5 chr3 127376952 127377139 -32222644 + B2_Mm2 SINE B2 1 189 -6 1 1556 816 125 0 0 chr3 127378316 127378444 -32221339 + (TTCC)n Simple_repeat Simple_repeat 2 129 0 1 1556 877 190 5 32 chr3 127378927 127379117 -32220666 + ORR1C2 LTR MaLR 1 185 -199 1 1556 626 196 0 30 chr3 127379117 127379356 -32220427 + CT-rich Low_complexity Low_complexity 1 231 0 1 1556 801 24 48 0 chr3 127379408 127379532 -32220251 + (CCTG)n Simple_repeat Simple_repeat 4 133 0 1 1556 562 142 43 17 chr3 127379533 127379648 -32220135 + ORR1C2 LTR MaLR 266 383 -1 1 1556 318 282 174 14 chr3 127379648 127379787 -32219996 - MLT1C LTR MaLR -305 162 1 1 1556 262 284 92 55 chr3 127379793 127379957 -32219826 + MIR SINE MIR 66 235 -27 1 1556 333 68 0 0 chr3 127380080 127380124 -32219659 + (TTA)n Simple_repeat Simple_repeat 3 46 0 1 1556 1114 69 0 27 chr3 127380125 127380274 -32219509 - B1_Mus1 SINE Alu -2 146 2 1 1556 812 113 147 51 chr3 127381567 127381744 -32218039 + B2_Mm2 SINE B2 2 195 0 1 1556 324 0 0 0 chr3 127382035 127382071 -32217712 + (TAA)n Simple_repeat Simple_repeat 1 36 0 1 1556 822 165 22 0 chr3 127384442 127384671 -32215112 + CT-rich Low_complexity Low_complexity 1 233 0 1 1556 652 204 38 8 chr3 127384673 127384806 -32214977 - B1_Mus2 SINE Alu -8 139 3 1 1556 183 122 61 0 chr3 127385368 127385417 -32214366 + (CAA)n Simple_repeat Simple_repeat 2 53 0 1 1556 275 215 108 0 chr3 127385662 127385727 -32214056 - MER2 DNA MER2_type -47 298 227 1 1556 240 243 53 26 chr3 127385749 127385825 -32213958 - MER2 DNA MER2_type -182 163 86 1 1556 778 229 22 0 chr3 127385914 127386093 -32213690 - B3A SINE B2 -15 183 1 1 1556 474 273 14 92 chr3 127386758 127386899 -32212884 - B4A SINE B4 -87 137 8 1 1556 682 136 168 0 chr3 127388460 127388585 -32211198 - MTC LTR MaLR 0 421 276 1 1556 405 58 0 0 chr3 127388593 127388645 -32211138 + (CA)n Simple_repeat Simple_repeat 1 52 0 1 1556 266 297 58 25 chr3 127388886 127389007 -32210776 - PB1 SINE Alu -2 125 1 1 1556 267 176 29 29 chr3 127390062 127390132 -32209651 + (TG)n Simple_repeat Simple_repeat 1 70 0 1 1556 441 54 0 0 chr3 127390149 127390205 -32209578 + (TATG)n Simple_repeat Simple_repeat 4 59 0 1 1556 726 34 0 0 chr3 127390801 127390890 -32208893 + (CA)n Simple_repeat Simple_repeat 1 89 0 1 1556 969 172 0 0 chr3 127391055 127391235 -32208548 + CT-rich Low_complexity Low_complexity 1 180 0 1 1556 238 167 62 0 chr3 127391629 127391677 -32208106 - URR1B DNA MER1_type 0 225 175 1 1556 561 105 127 34 chr3 127391862 127391980 -32207803 - URR1B DNA MER1_type -38 187 59 1 1556 523 260 142 74 chr3 127391998 127392160 -32207623 + B3A SINE B2 23 195 0 1 1556 270 240 86 9 chr3 127392448 127392553 -32207230 - L1MEe LINE L1 -4574 280 168 1 1556 1475 28 0 6 chr3 127392559 127392740 -32207043 + (TTC)n Simple_repeat Simple_repeat 1 180 0 1 1556 989 153 14 11 chr3 127392740 127393022 -32206761 + CT-rich Low_complexity Low_complexity 1 283 0 1 1556 335 194 33 56 chr3 127393055 127393076 -32206707 + polypyrimidine Low_complexity Low_complexity 158 177 0 1 1556 1180 51 17 11 chr3 127393076 127393255 -32206528 + (TTC)n Simple_repeat Simple_repeat 1 180 0 1 1556 335 194 33 56 chr3 127393255 127393413 -32206370 + CT-rich Low_complexity Low_complexity 2 157 0 1 1556 659 234 14 14 chr3 127393464 127393607 -32206176 - B1_Mur1 SINE Alu -3 146 4 1 1556 887 231 6 0 chr3 127393674 127393843 -32205940 - B3A SINE B2 -27 171 2 1 1556 268 56 0 0 chr3 127394725 127394761 -32205022 - URR1B DNA MER1_type 0 225 190 1 1556 921 97 14 7 chr3 127395464 127395609 -32204174 - URR1B DNA MER1_type -23 202 57 1 1556 642 169 0 0 chr3 127396078 127396196 -32203587 + CT-rich Low_complexity Low_complexity 4 121 0 1 1556 222 118 0 0 chr3 127396355 127396389 -32203394 + (CACCAT)n Simple_repeat Simple_repeat 3 36 0 1 1556 208 241 0 0 chr3 127397083 127397141 -32202642 + A-rich Low_complexity Low_complexity 1 58 0 1 1556 297 0 0 0 chr3 127399275 127399308 -32200475 + (CA)n Simple_repeat Simple_repeat 2 34 0 1 1556 360 0 0 0 chr3 127399308 127399347 -32200436 + (GA)n Simple_repeat Simple_repeat 2 41 0 1 1556 788 281 300 12 chr3 127399347 127399834 -32199949 - Lx8 LINE L1 -17 7456 6830 1 1556 282 301 14 0 chr3 127399918 127399991 -32199792 - PB1D10 SINE Alu -39 78 5 1 1556 266 329 0 0 chr3 127399923 127399999 -32199784 - ID_B1 SINE B4 -71 153 78 1 1556 344 264 317 0 chr3 127400153 127400317 -32199466 + ID_B1 SINE B4 9 224 0 1 1556 432 204 36 80 chr3 127400377 127400488 -32199295 + URR1B DNA MER1_type 1 106 -119 1 1556 1336 77 0 0 chr3 127400488 127400671 -32199112 + ORR1A2 LTR MaLR 1 183 -144 1 1556 465 192 77 0 chr3 127400692 127400796 -32198987 + URR1B DNA MER1_type 113 224 -1 1 1556 293 223 115 0 chr3 127401474 127401631 -32198152 + (TTAGGG)n Simple_repeat Simple_repeat 3 177 0 1 194 1645 106 48 29 chr3 127401807 127402079 -32197704 - Lx LINE L1 -35 6619 6343 1 1557 189 0 0 0 chr3 127402780 127402801 -32196982 + (TA)n Simple_repeat Simple_repeat 1 21 0 1 1557 529 215 109 65 chr3 127402906 127402993 -32196790 + B3A SINE B2 2 87 -111 1 1557 3280 48 10 0 chr3 127402993 127403385 -32196398 - MTA_Mm LTR MaLR 0 396 1 1 1557 529 215 109 65 chr3 127403385 127403467 -32196316 + B3A SINE B2 88 182 -16 1 1557 251 93 23 0 chr3 127403467 127403510 -32196273 + (CA)n Simple_repeat Simple_repeat 1 44 0 1 1557 529 215 109 65 chr3 127403510 127403523 -32196260 + B3A SINE B2 183 193 -5 1 1557 326 84 0 66 chr3 127404195 127404271 -32195512 + CT-rich Low_complexity Low_complexity 3 73 0 1 1557 265 342 135 45 chr3 127404557 127404891 -32194892 + LTR79 LTR ERVL 71 434 -93 1 1557 814 271 13 47 chr3 127404897 127405133 -32194650 + B4A SINE B4 6 233 -59 1 1557 384 103 0 0 chr3 127405519 127405577 -32194206 + (TG)n Simple_repeat Simple_repeat 1 58 0 1 1557 561 243 58 21 chr3 127405577 127405753 -32194030 - B3A SINE B2 -36 180 1 1 1557 268 73 18 35 chr3 127406493 127406550 -32193233 + (TTTTG)n Simple_repeat Simple_repeat 2 57 0 1 1557 475 354 83 14 chr3 127406717 127407006 -32192777 - L1MB2 LINE L1 -189 5982 5674 1 1557 905 242 10 63 chr3 127407051 127407330 -32192453 - B4A SINE B4 -10 282 49 1 1557 1124 75 0 0 chr3 127407725 127407863 -32191920 + B1_Mus1 SINE Alu 1 138 -10 1 1557 212 0 36 0 chr3 127407863 127407891 -32191892 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1 1557 225 0 0 0 chr3 127408194 127408219 -32191564 + (CCAA)n Simple_repeat Simple_repeat 2 26 0 1 1557 315 0 0 0 chr3 127409485 127409520 -32190263 + (CA)n Simple_repeat Simple_repeat 2 36 0 1 1557 6828 105 6 18 chr3 127410727 127411758 -32188025 + L1_Mm LINE L1 3390 4407 -1476 1 1557 947 218 90 45 chr3 127413568 127413921 -32185862 + MTD LTR MaLR 5 401 -18 1 1557 265 217 0 16 chr3 127414351 127414412 -32185371 + B3 SINE B2 153 212 -4 1 1557 231 277 138 28 chr3 127414864 127415009 -32184774 + Charlie7 DNA MER1_type 2179 2339 -273 1 1557 368 208 10 0 chr3 127415396 127415492 -32184291 + (CA)n Simple_repeat Simple_repeat 1 97 0 1 1557 216 0 0 0 chr3 127416667 127416691 -32183092 + (TG)n Simple_repeat Simple_repeat 2 25 0 1 1557 201 130 58 0 chr3 127416983 127417052 -32182731 + (CAAA)n Simple_repeat Simple_repeat 4 76 0 1 1557 1405 69 26 21 chr3 127417210 127417403 -32182380 - B2_Mm2 SINE B2 -1 194 1 1 1557 327 104 0 0 chr3 127418162 127418210 -32181573 + (TTCA)n Simple_repeat Simple_repeat 1 48 0 1 1557 361 261 68 0 chr3 127418225 127418313 -32181470 + RSINE1 SINE B4 4 97 -68 1 1557 378 267 96 80 chr3 127418881 127419222 -32180561 + MLT1A1 LTR MaLR 1 408 0 1 1557 940 260 70 101 chr3 127419550 127419851 -32179932 + MT2B LTR ERVL 3 377 -224 1 1557 1402 163 35 135 chr3 127419851 127420304 -32179479 + RMER17C LTR ERVK 3 410 0 1 1557 940 244 44 93 chr3 127420304 127420543 -32179240 + MT2B LTR ERVL 378 599 -2 1 1557 279 269 0 51 chr3 127420573 127420671 -32179112 - BC1_Mm scRNA scRNA -57 95 3 1 1557 599 161 39 24 chr3 127421141 127421268 -32178515 - B3 SINE B2 -87 129 1 1 1557 441 0 0 0 chr3 127421708 127421757 -32178026 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 1557 263 260 13 27 chr3 127423552 127423627 -32176156 + G-rich Low_complexity Low_complexity 5 78 0 1 1557 220 239 38 86 chr3 127424669 127424774 -32175009 - MER5A DNA MER1_type -85 104 5 1 1557 438 305 26 0 chr3 127424966 127425117 -32174666 - MER3 DNA MER1_type -50 159 5 1 1557 1575 53 0 16 chr3 127425286 127425479 -32174304 - B2_Mm1t SINE B2 -2 191 2 1 1557 354 235 32 11 chr3 127425574 127425675 -32174108 + PB1D10 SINE Alu 6 115 -34 1 1557 1025 213 24 5 chr3 127426038 127426250 -32173533 + B3 SINE B2 1 216 0 1 1557 1161 104 122 19 chr3 127426541 127426746 -32173037 - URR1A DNA MER1_type 0 226 1 1 1557 225 94 0 0 chr3 127426918 127426950 -32172833 + (TTG)n Simple_repeat Simple_repeat 2 33 0 1 1557 702 53 0 0 chr3 127428269 127428364 -32171419 + (TC)n Simple_repeat Simple_repeat 1 95 0 1 1557 2477 167 42 46 chr3 127428394 127428920 -32170863 - RLTR28 LTR ERVL 0 524 1 1 1557 24 53 0 0 chr3 127429175 127429213 -32170570 + AT_rich Low_complexity Low_complexity 1 38 0 1 1557 302 198 209 0 chr3 127430207 127430293 -32169490 - PB1D7 SINE Alu -15 105 2 1 1557 24 0 0 0 chr3 127431692 127431716 -32168067 + AT_rich Low_complexity Low_complexity 1 24 0 1 1557 232 25 49 24 chr3 127433294 127433335 -32166448 + (GTTTG)n Simple_repeat Simple_repeat 2 43 0 1 1557 1179 58 0 0 chr3 127433335 127433474 -32166309 - B1_Mus1 SINE Alu -9 139 1 1 1557 305 186 29 0 chr3 127434537 127434607 -32165176 + 5S rRNA rRNA 47 118 -3 1 1557 192 125 0 0 chr3 127434719 127434751 -32165032 + (CCA)n Simple_repeat Simple_repeat 3 34 0 1 1557 498 129 0 0 chr3 127435394 127435479 -32164304 + (GGGAGA)n Simple_repeat Simple_repeat 2 86 0 1 1557 5126 190 76 25 chr3 127435674 127436755 -32163028 + Lx5 LINE L1 5904 7050 0 1 1557 446 256 0 13 chr3 127436760 127436914 -32162869 + GA-rich Low_complexity Low_complexity 2 153 0 1 1557 612 40 0 0 chr3 127436928 127437003 -32162780 + (CTA)n Simple_repeat Simple_repeat 2 76 0 1 1557 292 299 53 5 chr3 127437021 127437209 -32162574 + MusHAL1 LINE L1 377 573 -2139 1 1557 267 300 0 43 chr3 127437349 127437443 -32162340 - RSINE1 SINE B4 -71 94 5 1 1557 857 319 41 16 chr3 127437443 127437806 -32161977 + L1MA8 LINE L1 5786 6157 -134 1 1557 788 218 91 10 chr3 127437891 127438090 -32161693 + B3 SINE B2 1 215 -1 1 1557 595 204 63 121 chr3 127438385 127438608 -32161175 + B3 SINE B2 1 210 -6 1 1557 408 91 0 0 chr3 127438767 127438833 -32160950 + (GA)n Simple_repeat Simple_repeat 2 67 0 1 1557 282 309 64 0 chr3 127438898 127438992 -32160791 + B4 SINE B4 2 101 -191 1 1557 232 284 40 0 chr3 127439046 127439120 -32160663 + B4A SINE B4 15 91 -201 1 1557 266 245 9 113 chr3 127439177 127439283 -32160500 + RSINE1 SINE B4 71 165 0 1 1557 240 59 0 0 chr3 127439298 127439332 -32160451 + (CA)n Simple_repeat Simple_repeat 2 35 0 1 1557 740 183 89 61 chr3 127439532 127439712 -32160071 + B3 SINE B2 1 185 -10 1 1557 212 139 47 0 chr3 127439918 127439961 -32159822 + (TCTA)n Simple_repeat Simple_repeat 1 45 0 1 1557 343 200 0 13 chr3 127440091 127440167 -32159616 + L1M5 LINE L1 4537 4611 -1535 1 1557 262 293 146 21 chr3 127440639 127440831 -32158952 - L1MB5 LINE L1 -9 6165 5950 1 1557 496 256 110 13 chr3 127440832 127440986 -32158797 - ID_B1 SINE B4 -54 170 2 1 1557 225 0 0 0 chr3 127441306 127441331 -32158452 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 1 1557 652 220 15 0 chr3 127441331 127441463 -32158320 - B1_Mur1 SINE Alu -10 139 6 1 1557 1220 61 0 0 chr3 127442242 127442390 -32157393 + B1_Mus1 SINE Alu 1 148 0 1 1557 3760 44 2 2 chr3 127442661 127443112 -32156671 + L1Md_F2 LINE L1 6131 6581 -1 1 1557 198 0 0 0 chr3 127443179 127443201 -32156582 + (TAAA)n Simple_repeat Simple_repeat 1 22 0 1 1557 361 231 25 13 chr3 127444547 127444626 -32155157 - B3 SINE B2 -38 178 99 1 1557 201 147 0 0 chr3 127444860 127444894 -32154889 + (CA)n Simple_repeat Simple_repeat 1 34 0 1 1557 565 250 132 13 chr3 127444894 127445129 -32154654 - B4A SINE B4 -26 266 4 1 1557 351 0 0 0 chr3 127445503 127445542 -32154241 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 1 1557 863 104 0 0 chr3 127445542 127445667 -32154116 - B1_Mus2 SINE Alu -10 137 13 1 1557 324 283 217 12 chr3 127446150 127446319 -32153464 + B3A SINE B2 1 185 -31 1 1557 270 0 0 0 chr3 127446331 127446361 -32153422 + (CA)n Simple_repeat Simple_repeat 1 30 0 1 1557 23 54 0 0 chr3 127447191 127447228 -32152555 + AT_rich Low_complexity Low_complexity 1 37 0 1 1557 389 210 49 0 chr3 127447258 127447339 -32152444 - B4A SINE B4 -196 96 12 1 1557 341 225 73 26 chr3 127448115 127448250 -32151533 - MIRc SINE MIR -90 178 34 1 1557 258 351 15 22 chr3 127450006 127450143 -32149640 + MIR SINE MIR 39 174 -88 1 1557 1145 122 77 0 chr3 127450337 127450518 -32149265 - B2_Mm2 SINE B2 0 195 1 1 1557 31 58 0 0 chr3 127451013 127451065 -32148718 + AT_rich Low_complexity Low_complexity 1 52 0 1 1557 306 0 0 0 chr3 127452351 127452385 -32147398 + (CA)n Simple_repeat Simple_repeat 2 35 0 1 1557 24 32 0 0 chr3 127452853 127452884 -32146899 + AT_rich Low_complexity Low_complexity 1 31 0 1 1557 358 229 231 22 chr3 127453888 127454022 -32145761 + RSINE1 SINE B4 4 165 0 1 1557 577 145 19 40 chr3 127454034 127454360 -32145423 + (CA)n Simple_repeat Simple_repeat 1 318 0 1 1557 196 149 21 21 chr3 127454411 127454459 -32145324 + (CA)n Simple_repeat Simple_repeat 1 48 0 1 1557 185 205 43 43 chr3 127454766 127454812 -32144971 + L4 LINE RTE 1793 1838 -191 1 1557 579 153 12 53 chr3 127454951 127455113 -32144670 + B1_Mur4 SINE Alu 2 147 -1 1 1557 540 259 72 24 chr3 127456175 127456341 -32143442 + ID_B1 SINE B4 36 209 -15 1 1557 993 280 91 15 chr3 127456573 127456914 -32142869 - MTE2a LTR MaLR -10 369 3 1 1557 240 281 0 0 chr3 127457003 127457060 -32142723 + (CA)n Simple_repeat Simple_repeat 2 58 0 1 1557 253 229 0 0 chr3 127457313 127457361 -32142422 + ERVL-E-int LTR ERVL 1481 1528 -4139 1 1557 528 59 0 0 chr3 127459263 127459331 -32140452 + (CA)n Simple_repeat Simple_repeat 2 69 0 1 1557 667 272 38 51 chr3 127459732 127459968 -32139815 - B4A SINE B4 -59 233 1 1 1557 451 271 60 91 chr3 127460406 127460605 -32139178 - B3A SINE B2 -5 193 1 1 1557 614 162 8 0 chr3 127462099 127462216 -32137567 + CT-rich Low_complexity Low_complexity 2 119 0 1 1557 762 202 0 0 chr3 127463356 127463524 -32136259 + (TA)n Simple_repeat Simple_repeat 1 168 0 1 1557 1184 244 48 10 chr3 127464177 127464467 -32135316 + MTD LTR MaLR 119 419 0 1 1557 333 0 0 0 chr3 127464578 127464615 -32135168 + (TG)n Simple_repeat Simple_repeat 1 37 0 1 1557 351 0 0 0 chr3 127464615 127464653 -32135130 + (GA)n Simple_repeat Simple_repeat 1 39 0 1 1557 712 168 69 0 chr3 127464653 127464784 -32134999 - B1_Mur4 SINE Alu -9 141 2 1 1557 501 47 0 0 chr3 127465890 127465954 -32133829 + (TC)n Simple_repeat Simple_repeat 1 64 0 1 1557 264 111 0 0 chr3 127465956 127466001 -32133782 + (CAGA)n Simple_repeat Simple_repeat 4 48 0 1 1557 1059 41 0 20 chr3 127466310 127466458 -32133325 + (TAGA)n Simple_repeat Simple_repeat 2 146 0 1 1557 1059 119 43 48 chr3 127467327 127467513 -32132270 - B2_Mm2 SINE B2 -10 185 1 1 1557 277 299 13 13 chr3 127468079 127468157 -32131626 - ID2 SINE ID 0 83 6 1 1557 25 51 0 0 chr3 127468839 127468878 -32130905 + AT_rich Low_complexity Low_complexity 1 39 0 1 1557 276 260 0 0 chr3 127468918 127468995 -32130788 + L1M3 LINE L1 4673 4749 -1397 1 1557 750 235 20 20 chr3 127468995 127469195 -32130588 + B3 SINE B2 2 201 -15 1 1557 396 0 0 0 chr3 127469196 127469240 -32130543 + (TAAA)n Simple_repeat Simple_repeat 1 44 0 1 1557 886 258 223 24 chr3 127469240 127470092 -32129691 + L1M3 LINE L1 4732 5780 -391 1 1557 498 33 0 0 chr3 127470092 127470152 -32129631 + (CATA)n Simple_repeat Simple_repeat 3 62 0 1 1557 742 169 0 0 chr3 127470396 127470520 -32129263 - B1_Mur2 SINE Alu -20 129 6 1 1557 212 258 48 0 chr3 127470546 127470608 -32129175 + L2 LINE L2 2327 2391 -1028 1 1557 659 192 180 33 chr3 127470619 127470802 -32128981 - B3 SINE B2 -6 210 1 1 1557 784 230 53 24 chr3 127471344 127471553 -32128230 + B3 SINE B2 2 216 0 1 1557 525 44 0 0 chr3 127471916 127471984 -32127799 + (CA)n Simple_repeat Simple_repeat 2 69 0 1 1557 340 346 69 32 chr3 127472436 127472624 -32127159 + MER44D DNA MER2_type 9 203 -502 1 1557 1135 108 0 6 chr3 127472953 127473121 -32126662 + B2_Mm2 SINE B2 5 171 -24 1 1557 39071 15 1 8 chr3 127474515 127480797 -32118986 + L1Md_A LINE L1 1 5586 -297 1 1557 8977 15 0 0 chr3 127480797 127481793 -32117990 + L1Md_A LINE L1 5587 6582 0 1 1557 382 280 50 0 chr3 127481852 127481952 -32117831 - RSINE1 SINE B4 -25 140 36 1 1557 334 276 45 57 chr3 127483620 127483797 -32115986 + Charlie2a DNA MER1_type 1616 1790 -1071 1 1557 477 133 0 72 chr3 127483875 127483972 -32115811 - B3 SINE B2 -122 94 5 1 1557 312 295 37 15 chr3 127484007 127484141 -32115642 + Charlie2a DNA MER1_type 1820 1956 -905 1 1557 840 209 14 0 chr3 127484219 127484367 -32115416 + B1_Mur4 SINE Alu 1 150 0 1 1557 21 57 0 0 chr3 127484610 127484645 -32115138 + AT_rich Low_complexity Low_complexity 1 35 0 1 1557 29 0 0 0 chr3 127484715 127484744 -32115039 + AT_rich Low_complexity Low_complexity 1 29 0 1 1557 612 211 53 30 chr3 127484956 127485088 -32114695 + B1_Mur2 SINE Alu 5 139 -10 1 1557 959 118 7 0 chr3 127485105 127485258 -32114525 + (GGAA)n Simple_repeat Simple_repeat 4 157 0 1 1557 26 0 0 0 chr3 127485302 127485328 -32114455 + AT_rich Low_complexity Low_complexity 1 26 0 1 1557 3096 107 16 9 chr3 127485413 127485866 -32113917 + Lx4A LINE L1 6601 7056 -2 1 1557 2451 68 30 126 chr3 127486547 127486951 -32112832 + RLTR10B2 LTR ERVK 1 365 0 1 1557 265 197 26 0 chr3 127487278 127487354 -32112429 + CT-rich Low_complexity Low_complexity 2 79 0 1 1557 654 194 68 48 chr3 127488263 127488409 -32111374 + B1_Mur2 SINE Alu 1 149 0 1 1557 2085 144 35 106 chr3 127488450 127488855 -32110928 - ORR1C1 LTR MaLR -2 376 1 1 1557 2578 207 52 16 chr3 127488855 127489488 -32110295 - ORR1C1-int LTR MaLR 0 1509 854 1 1557 293 239 0 0 chr3 127490138 127490205 -32109578 + PB1D7 SINE Alu 33 99 -21 1 1557 215 239 0 15 chr3 127490243 127490311 -32109472 + GA-rich Low_complexity Low_complexity 3 69 0 1 1557 1227 83 0 0 chr3 127490542 127490711 -32109072 + (GGAGAA)n Simple_repeat Simple_repeat 6 174 0 1 1557 662 163 24 0 chr3 127490757 127490880 -32108903 + RMER6A LTR ERVK 631 756 0 1 1557 319 231 0 0 chr3 127491673 127491738 -32108045 + PB1D10 SINE Alu 48 112 -5 1 1557 612 106 0 0 chr3 127493143 127493237 -32106546 + (TC)n Simple_repeat Simple_repeat 1 94 0 1 1557 405 0 0 0 chr3 127494523 127494568 -32105215 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 1557 1221 48 0 0 chr3 127495819 127495966 -32103817 - B1_Mus2 SINE Alu 0 147 1 1 1557 241 330 21 11 chr3 127495966 127496061 -32103722 - RSINE1 SINE B4 -67 98 3 1 1557 264 252 3 0 chr3 127496148 127496216 -32103567 - B4 SINE B4 -223 69 1 1 1557 1181 68 0 0 chr3 127496273 127496420 -32103363 - B1_Mm SINE Alu 0 147 1 1 1557 1092 51 0 35 chr3 127496838 127496981 -32102802 + B1_Mm SINE Alu 1 138 -9 1 1557 216 0 0 0 chr3 127496981 127497005 -32102778 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1 1557 1231 226 75 11 chr3 127497184 127497533 -32102250 - ORR1D1 LTR MaLR -1 373 3 1 1557 761 178 0 8 chr3 127497754 127497884 -32101899 + B3 SINE B2 1 129 -87 1 1557 297 167 0 0 chr3 127498206 127498260 -32101523 + (TG)n Simple_repeat Simple_repeat 2 55 0 1 1557 183 100 0 0 chr3 127498659 127498689 -32101094 + (TTTAA)n Simple_repeat Simple_repeat 5 34 0 1 1557 55 29 0 0 chr3 127498710 127498779 -32101004 + AT_rich Low_complexity Low_complexity 1 69 0 1 1557 1109 175 33 24 chr3 127498784 127498995 -32100788 - B3 SINE B2 -2 214 2 1 1557 315 197 83 14 chr3 127499128 127499200 -32100583 - PB1D10 SINE Alu -1 116 40 1 1557 216 0 0 0 chr3 127501121 127501145 -32098638 + (TTTTTG)n Simple_repeat Simple_repeat 6 29 0 1 1557 329 244 0 34 chr3 127501145 127501234 -32098549 - PB1D10 SINE Alu 0 117 32 2 1557 1704 192 96 8 chr3 127501494 127501587 -32098196 - RLTR16 LTR ERVK 0 505 404 3 1557 477 0 0 0 chr3 127501587 127501640 -32098143 + (CA)n Simple_repeat Simple_repeat 2 54 0 4 1557 1704 192 96 8 chr3 127501640 127501944 -32097839 - RLTR16 LTR ERVK -102 403 74 3 1557 1544 217 34 55 chr3 127502384 127502764 -32097019 - ORR1D1 LTR MaLR 0 374 3 5 1557 281 325 35 17 chr3 127502773 127502889 -32096894 - Tigger15a DNA TcMar -393 322 205 6 1557 22 0 0 0 chr3 127503629 127503651 -32096132 + AT_rich Low_complexity Low_complexity 1 22 0 7 1557 478 252 0 43 chr3 127503683 127503799 -32095984 - B3A SINE B2 -87 111 1 8 1557 226 196 0 0 chr3 127503863 127503909 -32095874 - RSINE1 SINE B4 -37 128 83 9 1557 423 0 0 0 chr3 127505145 127505192 -32094591 + (TC)n Simple_repeat Simple_repeat 1 47 0 1 1557 558 0 0 0 chr3 127505192 127505253 -32094530 + (CA)n Simple_repeat Simple_repeat 1 62 0 1 1557 1309 253 83 27 chr3 127505264 127505710 -32094073 - RMER5 LTR ERV1 -28 506 36 1 1557 268 267 143 0 chr3 127506399 127506504 -32093279 - RMER5 LTR ERV1 -375 159 40 1 1557 725 170 216 28 chr3 127506814 127506995 -32092788 - B3 SINE B2 0 216 2 1 1557 1131 289 40 3 chr3 127507468 127507818 -32091965 + MTE2b LTR MaLR 8 370 -9 1 1557 699 198 407 7 chr3 127508966 127509240 -32090543 + ORR1D1 LTR MaLR 1 384 0 1 1557 1627 206 96 18 chr3 127509240 127509680 -32090103 + ORR1D1-int LTR MaLR 1 474 -896 1 1557 536 199 29 14 chr3 127509682 127509820 -32089963 + RMER10A LTR ERVL 1 140 -302 1 1557 273 57 0 0 chr3 127510891 127510926 -32088857 + (TG)n Simple_repeat Simple_repeat 2 36 0 1 1557 874 164 0 20 chr3 127511741 127511890 -32087893 + B1_Mus2 SINE Alu 1 146 -1 1 1557 399 242 215 32 chr3 127512929 127513087 -32086696 + B4A SINE B4 3 189 -103 2 1557 274 98 19 19 chr3 127513135 127513187 -32086596 + (CA)n Simple_repeat Simple_repeat 1 52 0 2 1557 1467 77 5 0 chr3 127513812 127514006 -32085777 + B2_Mm2 SINE B2 1 195 0 2 1557 433 287 78 26 chr3 127514649 127514803 -32084980 + RSINE1 SINE B4 4 165 0 2 1557 290 26 26 0 chr3 127514810 127514849 -32084934 + (TC)n Simple_repeat Simple_repeat 1 40 0 2 1557 678 213 44 0 chr3 127514878 127515014 -32084769 + B1_Mur3 SINE Alu 1 142 -7 2 1557 462 36 0 0 chr3 127515993 127516049 -32083734 + (CA)n Simple_repeat Simple_repeat 1 56 0 2 1557 1579 99 14 0 chr3 127516915 127517136 -32082647 - URR1A DNA MER1_type 0 226 3 2 1557 1142 112 0 6 chr3 127517319 127517498 -32082285 + (GGGA)n Simple_repeat Simple_repeat 3 180 0 2 1557 206 156 0 22 chr3 127517488 127517510 -32082273 + polypurine Low_complexity Low_complexity 5 26 0 2 1557 1172 106 6 0 chr3 127517510 127517689 -32082094 + (GA)n Simple_repeat Simple_repeat 1 180 0 3 1557 206 156 0 22 chr3 127517689 127517712 -32082071 + polypurine Low_complexity Low_complexity 27 49 0 3 1557 475 257 36 14 chr3 127519257 127519395 -32080388 - B1F SINE Alu -8 141 1 3 1557 237 196 107 0 chr3 127521186 127521242 -32078541 - tRNA-Ala-GCY_ tRNA tRNA -6 69 8 3 1557 369 0 0 0 chr3 127521307 127521348 -32078435 + (CA)n Simple_repeat Simple_repeat 2 42 0 3 1557 354 211 0 0 chr3 127521514 127521628 -32078155 + A-rich Low_complexity Low_complexity 1 114 0 3 1557 477 231 27 34 chr3 127521649 127521797 -32077986 - Lx7 LINE L1 -393 7303 7157 3 1557 480 18 0 0 chr3 127522124 127522181 -32077602 + (CA)n Simple_repeat Simple_repeat 2 58 0 3 1557 248 290 16 0 chr3 127522258 127522320 -32077463 - ID4_ SINE ID -18 65 3 3 1557 1277 181 5 0 chr3 127522591 127522796 -32076987 - B3 SINE B2 -9 207 2 3 1557 21 0 0 0 chr3 127522872 127522893 -32076890 + AT_rich Low_complexity Low_complexity 1 21 0 4 1557 225 239 53 64 chr3 127523154 127523248 -32076535 + MT-int LTR MaLR 23 115 -983 4 1557 1443 134 197 0 chr3 127523249 127523554 -32076229 + RMER15 LTR ERVL 35 399 -176 4 1557 289 170 38 0 chr3 127523555 127523608 -32076175 + RMER15 LTR ERVL 521 575 0 4 1557 231 143 20 0 chr3 127523616 127523665 -32076118 + T-rich Low_complexity Low_complexity 3 52 0 4 1557 528 275 19 58 chr3 127524620 127524825 -32074958 + B3A SINE B2 1 197 -1 4 1557 246 62 0 0 chr3 127525718 127525750 -32074033 + (TC)n Simple_repeat Simple_repeat 1 32 0 4 1557 297 0 0 0 chr3 127525750 127525783 -32074000 + (TA)n Simple_repeat Simple_repeat 2 34 0 4 1557 525 216 32 8 chr3 127525822 127525948 -32073835 + B1F SINE Alu 13 141 -8 4 1557 21 57 0 0 chr3 127526381 127526416 -32073367 + AT_rich Low_complexity Low_complexity 1 35 0 4 1557 292 137 20 0 chr3 127527449 127527500 -32072283 + MTEa LTR MaLR 1 52 -327 4 1557 751 288 78 45 chr3 127527544 127527906 -32071877 - MTE2a LTR MaLR -14 405 28 5 1557 310 250 127 16 chr3 127528851 127528977 -32070806 + Zaphod DNA Tip100 3713 3852 -179 5 1557 2190 166 59 19 chr3 127529189 127529613 -32070170 - RMER1B Other Other -5 1061 621 5 1557 394 256 38 30 chr3 127529610 127529743 -32070040 + RMER1B Other Other 405 538 -528 5 1557 288 233 215 8 chr3 127532171 127532292 -32067491 + MER33 DNA MER1_type 1 146 -178 5 1558 278 293 176 11 chr3 127533645 127533821 -32065962 + L1M5 LINE L1 5505 5709 -531 5 1558 297 0 0 0 chr3 127534338 127534371 -32065412 + (TG)n Simple_repeat Simple_repeat 1 33 0 5 1558 1048 69 7 34 chr3 127534499 127534648 -32065135 + B1_Mus1 SINE Alu 2 146 -2 5 1558 207 0 0 0 chr3 127534648 127534671 -32065112 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 5 1558 278 190 129 12 chr3 127535544 127535629 -32064154 + MLT2B1 LTR ERVL 400 494 -73 5 1558 255 61 0 0 chr3 127535865 127535898 -32063885 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 6 1558 189 299 102 10 chr3 127537528 127537626 -32062157 + MIR SINE MIR 148 254 -8 6 1558 31 76 0 0 chr3 127540355 127540421 -32059362 + GC_rich Low_complexity Low_complexity 1 66 0 6 1558 216 0 0 0 chr3 127540588 127540612 -32059171 + (TC)n Simple_repeat Simple_repeat 2 25 0 6 1558 240 35 0 0 chr3 127540836 127540865 -32058918 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 6 1558 440 263 34 8 chr3 127541009 127541128 -32058655 + ID_B1 SINE B4 88 209 -15 6 1558 29 0 0 0 chr3 127541128 127541157 -32058626 + AT_rich Low_complexity Low_complexity 1 29 0 6 1558 420 213 0 11 chr3 127541346 127541441 -32058342 + B1F2 SINE Alu 43 136 -13 6 1558 261 273 69 29 chr3 127542035 127542137 -32057646 + L1MD1 LINE L1 6044 6149 -93 6 1558 360 0 0 0 chr3 127542201 127542241 -32057542 + (TG)n Simple_repeat Simple_repeat 1 40 0 6 1558 360 325 52 9 chr3 127542253 127542368 -32057415 - B3A SINE B2 -32 166 47 7 1558 617 225 35 7 chr3 127542451 127542594 -32057189 + B1_Mur1 SINE Alu 2 148 -1 7 1558 239 234 114 61 chr3 127543101 127543215 -32056568 - PB1 SINE Alu -1 126 7 7 1558 797 162 36 14 chr3 127544207 127544345 -32055438 + B1_Mur2 SINE Alu 1 141 -8 7 1558 24 0 0 0 chr3 127547343 127547367 -32052416 + AT_rich Low_complexity Low_complexity 1 24 0 7 1558 372 297 7 61 chr3 127547861 127548008 -32051775 - ID_B1 SINE B4 0 224 86 7 1558 227 188 43 129 chr3 127548034 127548150 -32051633 + L1MEg LINE L1 1102 1207 -4877 7 1558 212 158 0 0 chr3 127548482 127548520 -32051263 + A-rich Low_complexity Low_complexity 3 40 0 7 1558 1215 110 64 56 chr3 127548688 127549084 -32050699 + RLTR41 LTR ERV1 2 357 -89 7 1558 2052 165 11 11 chr3 127549095 127549475 -32050308 + RMER6D LTR ERVK 341 720 0 7 1558 1272 84 0 0 chr3 127549551 127549730 -32050053 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 8 1558 256 308 25 93 chr3 127549744 127549862 -32049921 - B1F SINE Alu -10 110 1 8 1558 210 277 72 0 chr3 127550300 127550383 -32049400 - MER5B DNA MER1_type -89 89 1 8 1558 215 325 70 47 chr3 127550996 127551125 -32048658 + MIRm SINE MIR 142 273 -3 8 1558 279 93 0 0 chr3 127551592 127551635 -32048148 + (TC)n Simple_repeat Simple_repeat 1 43 0 8 1558 284 180 0 90 chr3 127551687 127551754 -32048029 - tRNA-Ala-GCA tRNA tRNA -13 62 2 8 1558 261 331 85 0 chr3 127551959 127552089 -32047694 + MIR SINE MIR 68 208 -54 8 1558 485 294 20 0 chr3 127552429 127552575 -32047208 + RSINE1 SINE B4 1 149 -16 8 1558 1053 286 150 44 chr3 127552820 127553269 -32046514 - Lx8 LINE L1 -25 7448 6947 8 1558 1607 32 0 16 chr3 127553269 127553461 -32046322 - B2_Mm1a SINE B2 0 193 5 8 1558 1053 286 150 44 chr3 127553461 127553584 -32046199 - Lx8 LINE L1 -527 6946 6815 8 1558 231 60 60 0 chr3 127553764 127553814 -32045969 + (TG)n Simple_repeat Simple_repeat 1 53 0 9 1558 2556 98 44 5 chr3 127553992 127554380 -32045403 - RLTR9D LTR ERVK 0 403 1 9 1558 2330 83 48 3 chr3 127554724 127555037 -32044746 + ORR1A2 LTR MaLR 1 327 0 9 1558 282 343 64 23 chr3 127555588 127555761 -32044022 + MER58B DNA MER1_type 143 322 -19 9 1558 443 246 16 41 chr3 127555986 127556109 -32043674 + RSINE1 SINE B4 2 121 -44 9 1558 429 36 0 0 chr3 127556138 127556193 -32043590 + (CA)n Simple_repeat Simple_repeat 1 55 0 9 1558 23 0 0 0 chr3 127556233 127556256 -32043527 + AT_rich Low_complexity Low_complexity 1 23 0 9 1558 367 280 76 49 chr3 127556654 127556838 -32042945 - L1M2 LINE L1 -1115 5028 4840 9 1558 291 175 0 0 chr3 127557278 127557335 -32042448 + CT-rich Low_complexity Low_complexity 2 58 0 9 1558 3758 154 60 8 chr3 127557404 127558125 -32041658 - L1_Mur3 LINE L1 -2585 3295 2538 9 1558 362 307 20 0 chr3 127558122 127558223 -32041560 - Lx8 LINE L1 -181 7292 7190 1 1558 243 0 0 0 chr3 127558428 127558455 -32041328 + (TCTA)n Simple_repeat Simple_repeat 4 30 0 1 1558 366 23 0 0 chr3 127558473 127558516 -32041267 + (TATG)n Simple_repeat Simple_repeat 2 44 0 1 1558 2469 85 87 104 chr3 127558698 127558903 -32040880 + Lx LINE L1 6177 6389 -265 1 1558 1170 68 0 20 chr3 127558903 127559053 -32040730 + B1_Mus2 SINE Alu 1 147 0 1 1558 2469 85 87 104 chr3 127559053 127559318 -32040465 + Lx LINE L1 6390 6639 -15 1 1558 234 0 0 0 chr3 127559625 127559651 -32040132 + (CCA)n Simple_repeat Simple_repeat 3 28 0 1 1558 393 70 55 14 chr3 127559681 127559754 -32040029 + (TTCC)n Simple_repeat Simple_repeat 4 79 0 1 1558 976 136 0 0 chr3 127559775 127559922 -32039861 - B1_Mus1 SINE Alu -1 147 1 1 1558 234 0 0 0 chr3 127560711 127560737 -32039046 + (TA)n Simple_repeat Simple_repeat 1 26 0 1 1558 677 274 69 87 chr3 127561321 127561395 -32038388 - L1MC3 LINE L1 -835 6950 6871 1 1558 279 0 0 0 chr3 127561395 127561426 -32038357 + (TG)n Simple_repeat Simple_repeat 2 32 0 1 1558 441 0 0 0 chr3 127561427 127561476 -32038307 + (GA)n Simple_repeat Simple_repeat 2 50 0 1 1558 677 274 69 87 chr3 127561476 127561731 -32038052 - L1MC3 LINE L1 -915 6870 6625 1 1558 1133 190 61 70 chr3 127561733 127562075 -32037708 - ORR1E LTR MaLR 0 421 25 1 1558 1630 178 54 82 chr3 127562081 127562473 -32037310 + ORR1C2 LTR MaLR 4 384 0 1 1558 1985 194 23 5 chr3 127562474 127562863 -32036920 + MERVL_2A-int LTR ERVL 5227 5622 -139 1 1558 282 213 0 39 chr3 127562870 127562948 -32036835 + ORR1C2-int LTR MaLR 565 639 -1324 1 1558 313 167 0 0 chr3 127562948 127563002 -32036781 + MERVL_2A-int LTR ERVL 5706 5759 -2 1 1558 1209 195 56 105 chr3 127563004 127563435 -32036348 + MT2A LTR ERVL 1 543 -58 1 1558 341 299 11 0 chr3 127564061 127564148 -32035635 + CT-rich Low_complexity Low_complexity 3 90 0 1 1558 23 33 0 0 chr3 127564741 127564771 -32035012 + AT_rich Low_complexity Low_complexity 1 30 0 1 1558 1556 163 51 38 chr3 127564833 127565228 -32034555 - RMER17C LTR ERVK 0 410 11 1 1558 22 35 0 0 chr3 127565946 127565975 -32033808 + AT_rich Low_complexity Low_complexity 1 29 0 1 1558 408 88 0 0 chr3 127566072 127566129 -32033654 + (TTTC)n Simple_repeat Simple_repeat 2 58 0 1 1558 438 36 0 0 chr3 127566602 127566658 -32033125 + (T)n Simple_repeat Simple_repeat 1 56 0 1 1558 301 191 15 60 chr3 127567043 127567110 -32032673 - B1_Mus2 SINE Alu -61 86 23 1 1558 290 265 69 0 chr3 127567417 127567519 -32032264 + LTR16A LTR ERVL 337 445 -6 1 1558 1264 143 296 19 chr3 127569099 127569420 -32030363 + RMER17C LTR ERVK 1 410 0 1 1558 300 331 52 22 chr3 127569594 127569730 -32030053 - L2a LINE L2 0 3426 3287 1 1558 1185 0 0 20 chr3 127570448 127570596 -32029187 + (CAAG)n Simple_repeat Simple_repeat 2 146 0 1 1558 580 216 129 13 chr3 127571293 127571448 -32028335 - MER63A DNA AcHobo -25 185 13 1 1558 21 36 0 0 chr3 127572785 127572813 -32026970 + AT_rich Low_complexity Low_complexity 1 28 0 1 1558 229 262 139 23 chr3 127575434 127575520 -32024263 + LTR50 LTR ERVL 83 178 -617 1 1558 24 32 0 0 chr3 127575738 127575769 -32024014 + AT_rich Low_complexity Low_complexity 1 31 0 1 1558 249 33 0 0 chr3 127576145 127576175 -32023608 + (TTATA)n Simple_repeat Simple_repeat 5 34 0 1 1558 26 93 0 0 chr3 127576201 127576276 -32023507 + AT_rich Low_complexity Low_complexity 1 75 0 1 1558 327 25 0 0 chr3 127577533 127577573 -32022210 + (TG)n Simple_repeat Simple_repeat 2 41 0 1 1558 279 374 0 41 chr3 127577607 127577752 -32022031 - RSINE1 SINE B4 -25 140 2 1 1558 22 0 0 0 chr3 127577780 127577802 -32021981 + AT_rich Low_complexity Low_complexity 1 22 0 1 1558 257 248 133 25 chr3 127578148 127578268 -32021515 - L1MEc LINE L1 -4839 1561 1429 1 1558 2176 209 20 159 chr3 127578469 127579179 -32020604 + RMER19C LTR ERVK 1 611 0 1 1558 282 217 0 0 chr3 127579374 127579443 -32020340 + CT-rich Low_complexity Low_complexity 2 70 0 1 1558 477 245 0 14 chr3 127579443 127579584 -32020199 - Lx6 LINE L1 -27 7433 7295 1 1558 222 150 0 0 chr3 127579599 127579639 -32020144 + (CA)n Simple_repeat Simple_repeat 1 40 0 1 1558 720 230 91 29 chr3 127579779 127579989 -32019794 - Lx6 LINE L1 -174 7286 7064 1 1558 180 0 0 0 chr3 127580009 127580029 -32019754 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 1 1558 493 202 0 11 chr3 127580034 127580124 -32019659 - B1_Mur4 SINE Alu -47 103 15 1 1558 1217 41 7 0 chr3 127581124 127581270 -32018513 - B1_Mus1 SINE Alu -1 147 1 1 1558 207 100 0 0 chr3 127581705 127581735 -32018048 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 1 1558 228 86 0 0 chr3 127582899 127582934 -32016849 + (TCTG)n Simple_repeat Simple_repeat 4 38 0 1 1558 381 295 98 121 chr3 127582938 127583235 -32016548 - B4A SINE B4 -1 291 2 1 1558 21 0 0 0 chr3 127583440 127583461 -32016322 + AT_rich Low_complexity Low_complexity 1 21 0 1 1558 186 43 0 0 chr3 127584950 127584973 -32014810 + (AGGGGG)n Simple_repeat Simple_repeat 2 24 0 1 1558 331 298 69 12 chr3 127586149 127586446 -32013337 + L1_Rod LINE L1 1347 1680 -4167 1 1558 540 191 0 9 chr3 127586457 127586563 -32013220 + B3A SINE B2 1 105 -93 1 1558 236 254 16 0 chr3 127586604 127586667 -32013116 + RLTR19C LTR ERVK 34 97 -409 1 1558 630 337 43 39 chr3 127586980 127587492 -32012291 + L1M2 LINE L1 2305 2818 -3325 1 1558 622 285 80 33 chr3 127587517 127587793 -32011990 + B4 SINE B4 3 291 -1 1 1558 450 0 0 0 chr3 127587822 127587872 -32011911 + (CA)n Simple_repeat Simple_repeat 2 51 0 1 1558 269 223 145 108 chr3 127587882 127588014 -32011769 + L1M2 LINE L1 2840 2979 -3164 1 1558 982 49 7 20 chr3 127588014 127588161 -32011622 - L1Md_F3 LINE L1 -14 6570 6426 1 1558 269 223 145 108 chr3 127588161 127588194 -32011589 + L1M2 LINE L1 2980 3011 -3132 1 1558 342 281 73 5 chr3 127588239 127588443 -32011340 + Lx8 LINE L1 5182 5399 -481 1 1558 367 269 44 22 chr3 127588430 127588567 -32011216 + Lx8 LINE L1 5782 5921 -1552 1 1558 663 193 14 43 chr3 127589703 127589844 -32009939 - ID_B1 SINE B4 -6 218 82 1 1558 436 234 138 94 chr3 127590377 127590580 -32009203 - B3 SINE B2 -3 213 2 1 1558 204 246 33 0 chr3 127590583 127590644 -32009139 + GA-rich Low_complexity Low_complexity 3 65 0 1 1558 362 256 15 81 chr3 127590667 127590803 -32008980 + RSINE1 SINE B4 2 128 -37 1 1558 250 218 271 68 chr3 127593092 127593210 -32006573 - MIRb SINE MIR -7 261 120 1 1558 1425 33 0 11 chr3 127593615 127593798 -32005985 - L1Md_F3 LINE L1 -2 6582 6402 1 1558 285 271 104 37 chr3 127593827 127593961 -32005822 - MTEb LTR MaLR -1 378 236 1 1558 307 234 0 45 chr3 127594119 127594186 -32005597 - B1F SINE Alu -10 139 76 1 1558 389 309 58 19 chr3 127594266 127594421 -32005362 - MER20 DNA MER1_type -57 162 2 1 1558 186 146 68 68 chr3 127594590 127594649 -32005134 + MIRb SINE MIR 26 84 -184 1 1558 323 295 27 61 chr3 127595104 127595252 -32004531 - MIR SINE MIR -31 231 89 1 1558 436 182 30 10 chr3 127595486 127595586 -32004197 + B1_Mur1 SINE Alu 48 149 0 1 1558 315 186 90 35 chr3 127595864 127596009 -32003774 - Lx6 LINE L1 0 7460 7308 1 1558 207 0 0 0 chr3 127597524 127597547 -32002236 + (A)n Simple_repeat Simple_repeat 1 23 0 1 1558 21 0 0 0 chr3 127598428 127598449 -32001334 + AT_rich Low_complexity Low_complexity 1 21 0 1 1558 238 269 40 20 chr3 127598887 127599084 -32000699 + (CCCG)n Simple_repeat Simple_repeat 1 200 0 1 1558 186 103 0 0 chr3 127599270 127599299 -32000484 + (CGGGGG)n Simple_repeat Simple_repeat 1 29 0 1 1558 339 25 0 0 chr3 127599543 127599583 -32000200 + (TG)n Simple_repeat Simple_repeat 2 41 0 1 1558 225 0 0 0 chr3 127599790 127599815 -31999968 + (TG)n Simple_repeat Simple_repeat 1 25 0 1 1558 228 67 0 0 chr3 127599815 127599845 -31999938 + (GA)n Simple_repeat Simple_repeat 2 31 0 1 1558 1044 173 16 5 chr3 127600712 127600904 -31998879 + B2_Mm2 SINE B2 1 194 -1 1 1558 1255 7 0 0 chr3 127601576 127601716 -31998067 + B1_Mm SINE Alu 2 141 -6 1 1558 648 38 0 0 chr3 127601718 127601797 -31997986 + (GAAA)n Simple_repeat Simple_repeat 2 80 0 1 1558 1191 244 98 11 chr3 127602931 127603288 -31996495 + MTD LTR MaLR 18 405 -14 1 1558 370 215 9 9 chr3 127603520 127603589 -31996194 + polypurine Low_complexity Low_complexity 3 71 0 1 1558 1284 89 0 0 chr3 127603589 127603769 -31996014 + (GGAGA)n Simple_repeat Simple_repeat 1 180 0 1 1558 370 215 9 9 chr3 127603769 127603807 -31995976 + polypurine Low_complexity Low_complexity 72 109 0 1 1558 398 268 59 68 chr3 127603912 127604197 -31995586 + L1MA7 LINE L1 6017 6291 0 1 1558 249 261 41 52 chr3 127604289 127604386 -31995397 + B1F SINE Alu 47 142 -7 1 1558 218 315 62 18 chr3 127604849 127604962 -31994821 - L3 LINE CR1 -11 4478 4361 1 1558 1794 203 40 14 chr3 127604962 127605364 -31994419 + MTD LTR MaLR 1 403 -16 1 1558 604 240 0 0 chr3 127605530 127605655 -31994128 - RSINE1 SINE B4 -40 125 1 1 1558 1058 62 13 52 chr3 127605765 127605918 -31993865 + B1_Mus1 SINE Alu 2 148 0 1 1558 228 88 50 50 chr3 127605918 127605978 -31993805 + (CAAAC)n Simple_repeat Simple_repeat 5 64 0 1 1558 365 0 22 0 chr3 127606017 127606062 -31993721 + (TG)n Simple_repeat Simple_repeat 2 47 0 1 1558 277 245 192 58 chr3 127606264 127606420 -31993363 + RLTR15 LTR ERVK 21 197 -308 1 1558 61 27 0 0 chr3 127606590 127606665 -31993118 + AT_rich Low_complexity Low_complexity 1 75 0 1 1558 890 78 0 8 chr3 127607547 127607676 -31992107 + (TTCC)n Simple_repeat Simple_repeat 3 130 0 1 1558 556 157 118 0 chr3 127607680 127607782 -31992001 - PB1D9 SINE Alu -5 115 2 1 1558 824 183 82 25 chr3 127609100 127609296 -31990487 + B3 SINE B2 5 211 -5 1 1558 284 197 92 0 chr3 127610517 127610593 -31989190 - B3 SINE B2 -3 213 131 1 1558 1149 57 7 0 chr3 127610639 127610779 -31989004 + B1_Mus1 SINE Alu 1 141 -7 1 1558 366 183 0 0 chr3 127610791 127610862 -31988921 + GA-rich Low_complexity Low_complexity 3 73 0 1 1558 340 294 78 78 chr3 127611324 127611542 -31988241 + MLT1A0 LTR MaLR 9 226 -139 2 1558 285 79 0 0 chr3 127611544 127611582 -31988201 + RMER6A LTR ERVK 1 38 -682 2 1558 493 189 0 131 chr3 127611593 127611688 -31988095 + MT2B LTR ERVL 181 259 -342 2 1558 250 217 0 0 chr3 127611688 127611734 -31988049 + B1_Mus2 SINE Alu 3 48 -99 2 1558 1945 114 9 12 chr3 127611815 127612135 -31987648 + RMER6A LTR ERVK 414 732 -24 2 1558 937 168 79 35 chr3 127612136 127612339 -31987444 - B3 SINE B2 -3 213 2 2 1558 404 282 23 68 chr3 127612371 127612385 -31987398 - B4 SINE B4 -114 178 149 2 1558 503 128 0 0 chr3 127612385 127612463 -31987320 - B1_Mus1 SINE Alu -70 78 1 2 1558 404 282 23 68 chr3 127612463 127612504 -31987279 - B4 SINE B4 -114 148 52 2 1558 225 250 0 0 chr3 127612498 127612554 -31987229 + Tigger15a DNA TcMar 553 608 -107 2 1558 1257 34 0 0 chr3 127613448 127613595 -31986188 + B1_Mm SINE Alu 1 147 0 2 1558 21 0 0 0 chr3 127613595 127613616 -31986167 + AT_rich Low_complexity Low_complexity 1 21 0 2 1558 189 0 0 0 chr3 127613663 127613684 -31986099 + (CAT)n Simple_repeat Simple_repeat 3 23 0 2 1558 302 213 93 0 chr3 127614292 127614367 -31985416 + ID4_ SINE ID 2 83 0 2 1558 635 267 72 75 chr3 127614552 127614844 -31984939 + B4A SINE B4 1 291 -1 2 1558 560 198 50 0 chr3 127615866 127615987 -31983796 + RSINE1 SINE B4 1 127 -38 2 1558 203 152 22 0 chr3 127615987 127616033 -31983750 + GA-rich Low_complexity Low_complexity 3 49 0 2 1558 350 197 26 0 chr3 127616483 127616559 -31983224 - BC1_Mm scRNA scRNA -66 86 9 2 1558 22 35 0 0 chr3 127616590 127616619 -31983164 + AT_rich Low_complexity Low_complexity 1 29 0 2 1558 499 245 73 12 chr3 127618371 127618536 -31981247 - L1MB7 LINE L1 -185 5999 5825 2 1558 2724 64 0 20 chr3 127618945 127619298 -31980485 + ORR1A1 LTR MaLR 1 346 0 2 1558 1131 86 0 0 chr3 127619300 127619439 -31980344 - B1_Mus1 SINE Alu -8 140 2 2 1558 505 246 26 0 chr3 127619676 127619790 -31979993 + PB1D10 SINE Alu 1 117 0 2 1558 493 288 81 49 chr3 127619827 127620050 -31979733 - MER2 DNA MER2_type -93 252 23 2 1558 523 276 106 29 chr3 127620050 127620296 -31979487 - L1MB7 LINE L1 -382 5802 5538 2 1558 337 221 87 0 chr3 127620368 127620472 -31979311 - L1MB7 LINE L1 -846 5300 5188 2 1558 1094 270 56 32 chr3 127620552 127620983 -31978800 - L1MB7 LINE L1 -969 5177 4762 2 1558 1482 206 107 12 chr3 127620983 127621321 -31978462 + ORR1D2 LTR MaLR 1 370 0 2 1558 720 306 38 105 chr3 127621321 127621482 -31978301 - L1MB7 LINE L1 -1360 4786 4625 2 1558 243 0 0 0 chr3 127621587 127621614 -31978169 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 2 1558 519 246 21 50 chr3 127621614 127621755 -31978028 - B1_Mur2 SINE Alu -11 138 2 2 1558 2452 145 5 10 chr3 127622206 127622590 -31977193 + RLTR14 LTR ERV1 1 382 0 2 1558 300 314 23 39 chr3 127622593 127622722 -31977061 + LTR41B LTR ERVL 432 558 -200 2 1558 2517 92 36 6 chr3 127623375 127623736 -31976047 - Lx2 LINE L1 0 6997 6626 2 1558 225 138 190 0 chr3 127623765 127623823 -31975960 + 4.5SRNA scRNA scRNA 5 73 -21 2 1558 363 290 71 47 chr3 127624019 127624189 -31975594 + MER5A DNA MER1_type 10 183 -6 2 1558 962 72 7 0 chr3 127624312 127624450 -31975333 + B1_Mus2 SINE Alu 9 147 0 2 1558 261 0 0 0 chr3 127624464 127624493 -31975290 + (CAAAC)n Simple_repeat Simple_repeat 2 30 0 2 1558 684 61 0 0 chr3 127625432 127625530 -31974253 + (CAAAA)n Simple_repeat Simple_repeat 3 100 0 2 1558 634 242 0 125 chr3 127625601 127625809 -31973974 + B3A SINE B2 1 182 -16 2 1558 231 36 0 0 chr3 127625813 127625841 -31973942 + (CAAT)n Simple_repeat Simple_repeat 3 30 0 2 1558 633 61 0 0 chr3 127627023 127627105 -31972678 + (TA)n Simple_repeat Simple_repeat 2 83 0 2 1558 36 40 0 0 chr3 127627117 127627167 -31972616 + AT_rich Low_complexity Low_complexity 1 50 0 2 1558 809 176 0 0 chr3 127627220 127627356 -31972427 + B3 SINE B2 1 136 -80 2 1558 896 283 45 25 chr3 127627437 127627723 -31972060 + MLT1A0 LTR MaLR 74 365 0 2 1558 875 314 80 22 chr3 127627778 127628279 -31971504 - MT2A LTR ERVL 0 533 4 2 1558 399 355 44 73 chr3 127628615 127628819 -31970964 + B3A SINE B2 1 198 0 2 1558 541 173 47 32 chr3 127629383 127629569 -31970214 - RMER17B LTR ERVK -396 510 301 2 1558 592 267 55 86 chr3 127629797 127630145 -31969638 - ORR1E LTR MaLR -15 344 8 2 1558 635 75 0 21 chr3 127630593 127630688 -31969095 + (TCCC)n Simple_repeat Simple_repeat 1 93 0 2 1558 540 284 126 22 chr3 127630689 127630961 -31968822 - B4 SINE B4 -18 274 2 2 1558 1673 37 0 0 chr3 127631801 127631992 -31967791 - B2_Mm1t SINE B2 -1 192 2 2 1558 2145 137 41 33 chr3 127632074 127632466 -31967317 + RMER10B LTR ERVL 1 395 -3 2 1558 1252 41 11 17 chr3 127632586 127632816 -31966967 - L1Md_F2 LINE L1 0 6582 6410 2 1558 221 133 13 39 chr3 127632816 127632837 -31966946 + T-rich Low_complexity Low_complexity 2 23 0 2 1558 225 65 0 0 chr3 127633205 127633236 -31966547 + (CAAAAA)n Simple_repeat Simple_repeat 5 35 0 2 1558 333 47 0 0 chr3 127634087 127634130 -31965653 + (CA)n Simple_repeat Simple_repeat 1 43 0 2 1558 356 283 87 32 chr3 127634213 127634432 -31965351 - L1MA4 LINE L1 -253 6047 5817 2 1558 241 250 12 23 chr3 127634866 127634952 -31964831 + (TCTA)n Simple_repeat Simple_repeat 4 88 0 2 1558 233 212 34 91 chr3 127635146 127635234 -31964549 + L1ME3A LINE L1 6018 6100 -73 2 1558 6764 65 45 2 chr3 127636391 127637280 -31962503 - L1_Mus3 LINE L1 -6 6632 5706 2 1558 756 220 226 114 chr3 127637482 127638000 -31961783 - RMER4B LTR ERVK -9 576 1 2 1558 3675 184 54 94 chr3 127638000 127638815 -31960968 - MYSERV6-int LTR ERVK 0 8959 8174 2 1558 564 15 0 0 chr3 127638815 127638880 -31960903 + (TCTA)n Simple_repeat Simple_repeat 3 67 0 2 1558 3675 184 54 94 chr3 127638880 127639021 -31960762 - MYSERV6-int LTR ERVK -786 8173 8043 2 1558 1455 206 49 82 chr3 127639129 127639520 -31960263 + RLTR1B LTR ERV1 135 512 0 2 1558 750 191 31 26 chr3 127639520 127639714 -31960069 - MYSERV-int LTR ERVK -977 5573 5379 2 1558 482 209 0 0 chr3 127639771 127639862 -31959921 - MurERV4-int LTR ERVK -3792 1468 1378 2 1558 1014 224 51 0 chr3 127640108 127640322 -31959461 - URR1A DNA MER1_type -1 225 1 2 1558 1242 34 0 7 chr3 127641436 127641584 -31958199 + B1_Mus1 SINE Alu 2 148 0 2 1558 393 75 0 0 chr3 127641584 127641637 -31958146 + (A)n Simple_repeat Simple_repeat 1 53 0 2 1558 4826 165 84 25 chr3 127641757 127642673 -31957110 - RMER1A Other Other -6 1024 55 2 1558 1060 268 167 3 chr3 127642674 127643052 -31956731 - RMER1A Other Other -656 374 1 2 1558 1506 287 14 7 chr3 127643030 127643451 -31956332 - RMER1B Other Other -642 424 1 2 1558 1733 126 112 3 chr3 127643605 127643908 -31955875 - ORR1A1 LTR MaLR -8 338 3 2 1558 572 322 44 66 chr3 127644022 127644388 -31955395 - MLT1G3 LTR MaLR -47 548 191 2 1558 615 139 0 0 chr3 127644482 127644611 -31955172 + (CAT)n Simple_repeat Simple_repeat 3 131 0 2 1558 198 0 0 0 chr3 127644611 127644633 -31955150 + (CAG)n Simple_repeat Simple_repeat 3 24 0 2 1558 218 269 0 56 chr3 127644659 127644730 -31955053 + ID2 SINE ID 17 83 0 2 1558 189 107 0 0 chr3 127645078 127645106 -31954677 + (T)n Simple_repeat Simple_repeat 1 28 0 2 1558 1241 34 0 0 chr3 127645106 127645253 -31954530 - B1_Mus2 SINE Alu 0 147 1 2 1558 1626 186 17 31 chr3 127646542 127646891 -31952892 - Lx5 LINE L1 0 7050 6707 2 1558 286 284 23 108 chr3 127646911 127646943 -31952840 + MT2B LTR ERVL 139 159 -442 2 1558 639 201 90 0 chr3 127646943 127647077 -31952706 + B1_Mur3 SINE Alu 3 148 -1 2 1558 293 313 0 0 chr3 127647493 127647576 -31952207 - PB1D10 SINE Alu -14 103 21 2 1558 707 76 95 0 chr3 127648157 127648262 -31951521 - L1_Mus3 LINE L1 -518 6120 6006 2 1558 3411 86 25 55 chr3 127648263 127648791 -31950992 + L1_Mus3 LINE L1 6120 6631 -7 2 1558 387 0 0 0 chr3 127649236 127649279 -31950504 + (TG)n Simple_repeat Simple_repeat 1 43 0 2 1558 243 284 25 35 chr3 127649402 127649551 -31950232 - MIRm SINE MIR -26 242 94 2 1558 357 207 0 0 chr3 127649864 127649946 -31949837 + (TG)n Simple_repeat Simple_repeat 1 82 0 2 1558 25 0 0 0 chr3 127650382 127650407 -31949376 + AT_rich Low_complexity Low_complexity 1 25 0 2 1558 648 0 0 0 chr3 127650788 127650860 -31948923 + (TTTC)n Simple_repeat Simple_repeat 2 73 0 2 1558 1444 142 201 7 chr3 127651644 127651948 -31947835 - Lx9 LINE L1 -2 7642 7280 2 1558 684 0 0 0 chr3 127652068 127652144 -31947639 + (GA)n Simple_repeat Simple_repeat 1 76 0 2 1558 441 0 0 0 chr3 127652980 127653029 -31946754 + (TTTTA)n Simple_repeat Simple_repeat 2 50 0 2 1558 252 0 0 0 chr3 127653192 127653220 -31946563 + (T)n Simple_repeat Simple_repeat 1 28 0 2 1558 311 257 0 0 chr3 127653287 127653357 -31946426 - 5S rRNA rRNA -31 90 21 2 1558 1116 245 101 3 chr3 127654339 127654556 -31945227 - MTE2b LTR MaLR -2 377 145 2 1558 490 161 0 0 chr3 127654556 127654637 -31945146 - ID2 SINE ID 0 83 3 2 1558 1116 245 101 3 chr3 127654637 127654747 -31945036 - MTE2b LTR MaLR -235 144 19 2 1558 2057 86 12 60 chr3 127654822 127655157 -31944626 - ORR1A2 LTR MaLR -8 319 1 2 1558 3012 148 24 63 chr3 127655619 127656208 -31943575 - RMER15 LTR ERVL 0 575 10 2 1558 1759 276 110 24 chr3 127656497 127657224 -31942559 + Lx8 LINE L1 5378 6171 -1302 2 1558 479 60 15 0 chr3 127657224 127657291 -31942492 + (TCTA)n Simple_repeat Simple_repeat 2 69 0 2 1558 1759 301 86 39 chr3 127657291 127657813 -31941970 + Lx8 LINE L1 6172 6713 -760 2 1558 288 0 0 0 chr3 127658146 127658178 -31941605 + (TTTA)n Simple_repeat Simple_repeat 3 34 0 2 1558 570 318 91 21 chr3 127658441 127658706 -31941077 + B4 SINE B4 6 289 -3 2 1558 491 319 72 40 chr3 127659420 127659890 -31939893 - L1MB2 LINE L1 -12 6159 5675 2 1558 642 26 0 0 chr3 127659943 127660019 -31939764 + (TG)n Simple_repeat Simple_repeat 1 76 0 2 1558 651 245 6 43 chr3 127660024 127660186 -31939597 - RSINE1 SINE B4 -1 164 9 2 1558 763 316 87 9 chr3 127661813 127662145 -31937638 - MLT1A0 LTR MaLR -2 363 6 2 1558 528 16 0 0 chr3 127662744 127662805 -31936978 + (TG)n Simple_repeat Simple_repeat 1 61 0 3 1558 1748 173 113 5 chr3 127662805 127663194 -31936589 - RMER20A LTR ERVK -75 441 11 3 194 1462 237 76 0 chr3 127664024 127664404 -31935379 + MTD LTR MaLR 3 411 -8 3 1559 399 263 75 5 chr3 127664900 127665020 -31934763 + B1F SINE Alu 12 136 -13 3 1559 191 114 0 28 chr3 127665032 127665068 -31934715 + (TTTTC)n Simple_repeat Simple_repeat 1 35 0 3 1559 687 84 0 0 chr3 127665076 127665171 -31934612 + (TCCC)n Simple_repeat Simple_repeat 4 98 0 3 1559 904 147 7 7 chr3 127665172 127665316 -31934467 - B1_Mus1 SINE Alu -4 144 1 3 1559 287 206 9 149 chr3 127665382 127665496 -31934287 - L1VL1 LINE L1 -6072 350 253 3 1559 4846 72 6 2 chr3 127665501 127666125 -31933658 + L1_Mus1 LINE L1 5941 6567 0 3 1559 476 433 53 15 chr3 127666813 127667078 -31932705 + MER45C DNA Tip100 321 595 -358 3 1559 259 171 18 45 chr3 127667206 127667316 -31932467 + (TAAA)n Simple_repeat Simple_repeat 2 108 0 3 1559 1886 122 151 48 chr3 127668056 127668258 -31931525 + RMER17C LTR ERVK 1 211 -199 3 1559 654 85 0 0 chr3 127668258 127668352 -31931431 + (TC)n Simple_repeat Simple_repeat 2 95 0 3 1559 1886 122 151 48 chr3 127668352 127668521 -31931262 + RMER17C LTR ERVK 212 410 0 3 1559 280 245 65 13 chr3 127669848 127670001 -31929782 + (CTATA)n Simple_repeat Simple_repeat 2 162 0 3 1559 4636 136 99 7 chr3 127670020 127670835 -31928948 - RMER19B LTR ERVK -12 890 1 3 1559 378 0 0 0 chr3 127670910 127670952 -31928831 + (TA)n Simple_repeat Simple_repeat 2 43 0 3 1559 262 271 69 6 chr3 127671002 127671162 -31928621 + (CTATA)n Simple_repeat Simple_repeat 3 172 0 3 1559 257 252 58 26 chr3 127671179 127671334 -31928449 + (TACTG)n Simple_repeat Simple_repeat 3 162 0 3 1559 478 202 0 0 chr3 127671685 127671774 -31928009 + B3 SINE B2 127 215 -1 3 1559 520 267 42 96 chr3 127671798 127672069 -31927714 - MTEa LTR MaLR -107 272 1 3 1559 351 278 51 36 chr3 127672075 127672213 -31927570 + MER2 DNA MER2_type 80 219 -126 3 1559 816 154 15 0 chr3 127672220 127672350 -31927433 + B1F SINE Alu 13 144 -5 3 1559 232 287 58 83 chr3 127672350 127672369 -31927414 - YREP_Mm Unknown Unknown -1499 279 162 3 1559 753 0 0 106 chr3 127673292 127673490 -31926293 + (TTC)n Simple_repeat Simple_repeat 1 177 0 3 1559 300 132 0 0 chr3 127673492 127673505 -31926278 + (TCC)n Simple_repeat Simple_repeat 3 15 0 3 1559 1458 11 0 16 chr3 127673505 127673688 -31926095 + (TTC)n Simple_repeat Simple_repeat 1 180 0 3 1559 300 132 0 0 chr3 127673688 127673727 -31926056 + (TCC)n Simple_repeat Simple_repeat 3 41 0 3 1559 806 96 314 7 chr3 127673728 127673865 -31925918 - B2_Mm2 SINE B2 -15 180 2 3 1559 893 258 18 40 chr3 127674631 127674857 -31924926 - ID_B1 SINE B4 -1 223 3 3 1559 1168 267 245 33 chr3 127674905 127675385 -31924398 + Lx6 LINE L1 6853 7434 -26 3 1559 976 209 44 15 chr3 127675957 127676161 -31923622 - B3 SINE B2 -6 210 1 3 1559 250 190 48 65 chr3 127676553 127676615 -31923168 - PB1D10 SINE Alu -24 93 33 3 1559 1866 190 54 22 chr3 127677051 127677422 -31922361 - MTD LTR MaLR -17 402 20 3 1559 581 139 0 9 chr3 127677425 127677534 -31922249 + (TAGA)n Simple_repeat Simple_repeat 1 108 0 3 1559 239 268 110 0 chr3 127677564 127677646 -31922137 + RSINE1 SINE B4 53 143 -22 3 1559 312 91 0 0 chr3 127677647 127677691 -31922092 + (CAA)n Simple_repeat Simple_repeat 1 44 0 3 1559 441 0 0 0 chr3 127677691 127677740 -31922043 + (CA)n Simple_repeat Simple_repeat 2 50 0 3 1559 791 240 136 38 chr3 127678150 127678414 -31921369 + B4A SINE B4 1 290 -2 3 1559 411 335 71 13 chr3 127678733 127678957 -31920826 + Tigger5 DNA MER2_type 6 242 -2164 3 1559 21 0 0 0 chr3 127679514 127679535 -31920248 + AT_rich Low_complexity Low_complexity 1 21 0 3 1559 681 244 147 53 chr3 127679578 127679768 -31920015 + B3 SINE B2 2 209 -7 3 1559 200 61 61 0 chr3 127680168 127680201 -31919582 + (TTTC)n Simple_repeat Simple_repeat 2 36 0 3 1559 26 30 0 0 chr3 127680768 127680801 -31918982 + AT_rich Low_complexity Low_complexity 1 33 0 3 1559 240 328 25 8 chr3 127681379 127681499 -31918284 - L1MA4A LINE L1 -106 6197 6076 3 1559 582 212 0 0 chr3 127681609 127681779 -31918004 + (TG)n Simple_repeat Simple_repeat 1 170 0 3 1559 329 268 24 35 chr3 127681779 127681864 -31917919 - RSINE1 SINE B4 0 165 82 3 1559 1170 66 0 0 chr3 127682027 127682163 -31917620 + B1_Mus2 SINE Alu 2 137 -10 3 1559 324 0 0 0 chr3 127682163 127682199 -31917584 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 3 1559 579 29 0 0 chr3 127682258 127682327 -31917456 + (TCTA)n Simple_repeat Simple_repeat 2 70 0 3 1559 1219 308 69 15 chr3 127682561 127683095 -31916688 + L1MD1 LINE L1 5488 6050 -192 3 1559 21 0 0 0 chr3 127683221 127683242 -31916541 + AT_rich Low_complexity Low_complexity 1 21 0 3 1559 249 208 0 0 chr3 127683242 127683290 -31916493 + B1F SINE Alu 1 48 -101 3 1559 261 264 40 90 chr3 127683399 127683499 -31916284 - Lx8 LINE L1 -173 7300 7206 3 1559 502 194 0 48 chr3 127683660 127683763 -31916020 + B1F2 SINE Alu 50 147 -2 3 1559 230 296 24 12 chr3 127683789 127683871 -31915912 + PB1D10 SINE Alu 27 109 -8 3 1559 278 267 126 25 chr3 127685200 127685378 -31914405 - L1ME3B LINE L1 -8 6232 5954 3 1559 2431 61 7 0 chr3 127685901 127686194 -31913589 - L1_Mus1 LINE L1 -3 6564 6270 3 1559 3426 61 0 0 chr3 127686213 127686620 -31913163 - L1Md_T LINE L1 0 6582 6176 3 1559 1771 71 0 0 chr3 127686620 127686844 -31912939 + L1Md_F2 LINE L1 5955 6178 -404 3 1559 529 300 40 119 chr3 127687395 127687747 -31912036 - ORR1E LTR MaLR -5 354 31 3 1559 2671 150 96 4 chr3 127687895 127688363 -31911420 + RLTR11A LTR ERVK 18 528 0 3 1559 334 278 10 40 chr3 127688795 127688896 -31910887 + MTEa LTR MaLR 273 370 -9 3 1559 300 332 116 18 chr3 127689091 127689315 -31910468 - L1M5 LINE L1 -1172 4974 4729 3 1559 318 80 0 0 chr3 127689366 127689416 -31910367 + (A)n Simple_repeat Simple_repeat 1 50 0 3 1559 685 265 22 7 chr3 127689551 127689688 -31910095 + B1_Mur4 SINE Alu 3 141 -9 3 1559 314 270 78 28 chr3 127689733 127689874 -31909909 - B1F SINE Alu 0 149 2 3 1559 420 348 79 12 chr3 127689908 127690251 -31909532 - L1M5 LINE L1 -3365 2781 2416 3 1559 689 237 121 105 chr3 127690368 127690740 -31909043 - MLT1A1 LTR MaLR -4 404 27 3 1559 919 240 70 0 chr3 127691313 127691513 -31908270 - B3 SINE B2 0 216 3 3 1559 1015 120 21 14 chr3 127691559 127691703 -31908080 + B1_Mur4 SINE Alu 5 149 -1 3 1559 201 175 0 0 chr3 127691874 127691914 -31907869 + (TGG)n Simple_repeat Simple_repeat 3 42 0 3 1559 421 343 110 13 chr3 127692436 127692672 -31907111 - MER2 DNA MER2_type 0 345 87 3 1559 1242 253 111 33 chr3 127693095 127693484 -31906299 - MTD LTR MaLR 0 419 1 3 1559 399 193 0 0 chr3 127693666 127693749 -31906034 + (TATG)n Simple_repeat Simple_repeat 2 84 0 3 1559 24 0 0 0 chr3 127693976 127694000 -31905783 + AT_rich Low_complexity Low_complexity 1 24 0 3 1559 27 29 0 0 chr3 127694054 127694088 -31905695 + AT_rich Low_complexity Low_complexity 1 34 0 3 1559 23 0 0 0 chr3 127694244 127694267 -31905516 + AT_rich Low_complexity Low_complexity 1 23 0 3 1559 851 223 17 0 chr3 127694313 127694488 -31905295 + Lx6 LINE L1 7110 7287 -173 3 1559 1307 96 11 6 chr3 127694529 127694707 -31905076 + B2_Mm1t SINE B2 1 179 -14 3 1559 182 162 221 0 chr3 127694778 127694846 -31904937 - L3 LINE CR1 -240 4249 4167 3 1559 264 287 123 32 chr3 127695829 127695984 -31903799 - MIR SINE MIR -16 246 78 3 1559 203 194 56 0 chr3 127696042 127696114 -31903669 + (TA)n Simple_repeat Simple_repeat 1 76 0 3 1559 248 354 112 22 chr3 127696583 127696762 -31903021 + MIRc SINE MIR 11 205 -63 3 1559 518 0 0 16 chr3 127697615 127697678 -31902105 + (CA)n Simple_repeat Simple_repeat 1 62 0 3 1559 261 0 0 0 chr3 127697678 127697706 -31902077 + (GA)n Simple_repeat Simple_repeat 2 30 0 3 1559 694 252 73 13 chr3 127699301 127699482 -31900301 - B3A SINE B2 -9 186 6 3 1559 315 261 25 90 chr3 127699515 127699637 -31900146 - L1M2 LINE L1 -2425 3718 3605 3 1559 475 177 9 26 chr3 127699639 127699755 -31900028 + C-rich Low_complexity Low_complexity 5 118 0 3 1559 209 39 0 0 chr3 127699756 127699782 -31900001 + (TTCC)n Simple_repeat Simple_repeat 3 28 0 3 1559 3721 273 117 21 chr3 127699811 127701412 -31898371 - L1_Rod LINE L1 -2296 3551 1798 3 1559 315 0 0 0 chr3 127701636 127701671 -31898112 + (T)n Simple_repeat Simple_repeat 1 35 0 3 1559 1352 187 243 13 chr3 127702686 127702814 -31896969 + ORR1D1 LTR MaLR 1 136 -238 3 1559 1119 49 0 0 chr3 127702814 127702956 -31896827 + (TCTCCC)n Simple_repeat Simple_repeat 1 142 0 3 1559 1352 187 243 13 chr3 127702956 127703131 -31896652 + ORR1D1 LTR MaLR 137 373 -1 3 1559 573 230 72 22 chr3 127703308 127703446 -31896337 - B1F1 SINE Alu -1 148 4 3 1559 1015 139 17 17 chr3 127703596 127703947 -31895836 + (TATG)n Simple_repeat Simple_repeat 1 351 0 3 1559 2895 211 23 47 chr3 127703972 127704634 -31895149 - Lx6 LINE L1 -333 7127 6482 3 1559 228 135 0 0 chr3 127705096 127705133 -31894650 + (CAA)n Simple_repeat Simple_repeat 3 39 0 3 1559 213 39 0 0 chr3 127705985 127706011 -31893772 + (CGAG)n Simple_repeat Simple_repeat 4 29 0 3 1559 25 0 0 0 chr3 127706212 127706237 -31893546 + AT_rich Low_complexity Low_complexity 1 25 0 3 1559 450 0 0 0 chr3 127706925 127706975 -31892808 + (TTTA)n Simple_repeat Simple_repeat 4 53 0 3 1559 878 214 64 39 chr3 127707045 127707249 -31892534 - B3 SINE B2 -6 210 2 3 1559 347 259 62 36 chr3 127707362 127707474 -31892309 + PB1D10 SINE Alu 2 116 -34 4 1559 426 353 54 63 chr3 127707733 127707954 -31891829 - MLT1J LTR MaLR -70 442 224 4 1559 216 249 11 53 chr3 127707962 127708149 -31891634 + (TG)n Simple_repeat Simple_repeat 2 180 0 4 1559 217 246 0 0 chr3 127709583 127709640 -31890143 + T-rich Low_complexity Low_complexity 3 59 0 4 1559 7173 39 6 1 chr3 127709650 127710513 -31889270 - L1Md_F3 LINE L1 -1 6583 5717 4 1559 345 82 0 0 chr3 127710555 127710604 -31889179 + (TCCA)n Simple_repeat Simple_repeat 1 49 0 4 1559 211 311 130 12 chr3 127710768 127710937 -31888846 + L2 LINE L2 2772 2960 -459 4 1559 246 300 42 62 chr3 127711545 127711641 -31888142 - MamGypLTR2c LTR Gypsy -21 1047 954 4 1559 307 343 142 33 chr3 127712048 127712259 -31887524 - MamGypLTR2c LTR Gypsy -522 546 313 4 1559 1108 193 29 15 chr3 127712642 127712847 -31886936 - B3 SINE B2 -8 208 1 4 1559 387 0 0 0 chr3 127713056 127713099 -31886684 + (CAAT)n Simple_repeat Simple_repeat 3 45 0 4 1559 2849 108 63 26 chr3 127713142 127713315 -31886468 + RLTR21 LTR ERVK 1 168 -1404 4 1559 1450 101 0 5 chr3 127713315 127713505 -31886278 - B2_Mm2 SINE B2 -6 189 1 4 1559 2849 108 63 26 chr3 127713505 127713788 -31885995 + RLTR21 LTR ERVK 169 474 -1098 4 1559 3620 33 2 0 chr3 127713788 127714211 -31885572 - L1Md_F3 LINE L1 -320 5563 5140 4 1559 7760 28 25 0 chr3 127714211 127715082 -31884701 + L1Md_F3 LINE L1 5692 6584 0 4 1559 4359 161 40 151 chr3 127715082 127716304 -31883479 + RLTR21 LTR ERVK 461 1546 -26 4 1559 623 304 114 81 chr3 127717673 127718144 -31881639 + MLT1E LTR MaLR 22 615 -38 4 1559 7953 57 3 3 chr3 127718646 127719704 -31880079 - L1Md_F2 LINE L1 -1 6581 5526 4 1559 1558 230 96 13 chr3 127719755 127720142 -31879641 - MTD LTR MaLR 0 419 1 4 1559 1070 231 157 25 chr3 127720174 127720498 -31879285 + Lx8 LINE L1 7010 7376 -97 4 1559 22 0 0 0 chr3 127720540 127720562 -31879221 + AT_rich Low_complexity Low_complexity 1 22 0 4 1559 226 164 0 76 chr3 127720907 127720986 -31878797 + A-rich Low_complexity Low_complexity 2 74 0 4 1559 418 284 9 0 chr3 127722277 127722393 -31877390 + L1MC LINE L1 5325 5441 -903 4 1559 309 288 112 28 chr3 127722610 127722753 -31877030 + HAL1-3A_ME LINE L1 1964 2118 -740 4 1559 1190 100 0 6 chr3 127722758 127722939 -31876844 + (GA)n Simple_repeat Simple_repeat 1 180 0 4 1559 1342 228 144 31 chr3 127722976 127723532 -31876251 - Charlie1a DNA MER1_type -22 1433 815 4 1559 548 53 13 0 chr3 127723553 127723629 -31876154 + (TCTA)n Simple_repeat Simple_repeat 4 80 0 4 1559 1206 93 17 20 chr3 127723646 127724231 -31875552 + (TCTA)n Simple_repeat Simple_repeat 1 582 0 4 1559 3190 85 0 135 chr3 127724231 127724735 -31875048 + RLTR10C LTR ERVK 1 436 0 4 1559 970 16 8 16 chr3 127724736 127724861 -31874922 + (TCTA)n Simple_repeat Simple_repeat 3 126 0 4 1559 357 264 126 100 chr3 127725220 127725451 -31874332 + MT2A LTR ERVL 297 533 0 4 1559 916 296 118 26 chr3 127725466 127725965 -31873818 - Charlie1a DNA MER1_type -859 596 52 4 1559 364 338 93 0 chr3 127726720 127726871 -31872912 - MER58A DNA MER1_type 0 224 60 4 1559 265 296 84 92 chr3 127729153 127729361 -31870422 - MIRb SINE MIR -45 223 15 4 1559 501 17 0 0 chr3 127730162 127730220 -31869563 + (TC)n Simple_repeat Simple_repeat 2 59 0 4 1559 459 236 28 9 chr3 127730248 127730355 -31869428 - PB1D10 SINE Alu -7 110 2 4 1559 270 259 0 0 chr3 127730887 127730972 -31868811 + (CTG)n Simple_repeat Simple_repeat 3 87 0 4 1559 459 0 0 0 chr3 127731726 127731777 -31868006 + (GA)n Simple_repeat Simple_repeat 1 51 0 4 1559 264 59 0 0 chr3 127733172 127733206 -31866577 + (GA)n Simple_repeat Simple_repeat 1 34 0 4 1559 2341 114 97 0 chr3 127733579 127733920 -31865863 - ORR1C1 LTR MaLR -4 374 1 4 1559 1104 114 0 0 chr3 127735339 127735506 -31864277 + (TTC)n Simple_repeat Simple_repeat 1 167 0 4 1559 603 40 0 0 chr3 127735558 127735632 -31864151 + (TCC)n Simple_repeat Simple_repeat 2 75 0 4 1559 6563 95 17 20 chr3 127735806 127736691 -31863092 - Lx LINE L1 -4 6650 5769 4 1559 703 287 46 0 chr3 127736711 127736885 -31862898 - B3A SINE B2 -14 184 3 4 1559 341 233 9 143 chr3 127736997 127737102 -31862681 - RSINE1 SINE B4 -69 96 6 4 1559 449 34 17 0 chr3 127738037 127738096 -31861687 + (TCTA)n Simple_repeat Simple_repeat 2 61 0 4 1559 1269 282 55 85 chr3 127738163 127738787 -31860996 - Lx9 LINE L1 -183 7461 6857 4 1559 955 234 52 24 chr3 127740107 127740317 -31859466 - B3 SINE B2 0 216 1 4 1559 1114 276 45 3 chr3 127740561 127740848 -31858935 + ORR1E LTR MaLR 2 300 -59 4 1559 266 50 25 0 chr3 127742241 127742281 -31857502 + (TC)n Simple_repeat Simple_repeat 1 41 0 4 1559 21 0 0 0 chr3 127742771 127742792 -31856991 + AT_rich Low_complexity Low_complexity 1 21 0 4 1559 478 358 96 50 chr3 127743427 127743845 -31855938 - MLT1L LTR MaLR -21 589 153 4 1559 407 305 11 74 chr3 127744174 127744392 -31855391 + MIR SINE MIR 34 225 -37 4 1559 237 314 0 0 chr3 127744576 127744627 -31855156 + ID4_ SINE ID 20 70 -13 4 1559 423 0 0 0 chr3 127744628 127744675 -31855108 + (CA)n Simple_repeat Simple_repeat 1 47 0 4 1559 550 271 191 39 chr3 127744864 127745221 -31854562 - LTR52 LTR ERVL -6 415 5 4 1559 22 0 0 0 chr3 127745341 127745363 -31854420 + AT_rich Low_complexity Low_complexity 1 22 0 4 1559 197 119 24 0 chr3 127745812 127745854 -31853929 + (TTATA)n Simple_repeat Simple_repeat 3 45 0 4 1559 1921 217 77 0 chr3 127746982 127747462 -31852321 - Lx9 LINE L1 -2 7642 7126 4 1559 309 156 0 0 chr3 127747452 127747497 -31852286 - Lx9 LINE L1 -824 6820 6776 4 1559 2039 175 44 19 chr3 127747692 127748053 -31851730 + ORR1D1 LTR MaLR 5 374 0 4 1559 1365 299 30 5 chr3 127748485 127748647 -31851136 - MTEb LTR MaLR 0 379 210 4 1559 3190 41 3 0 chr3 127748647 127749013 -31850770 + L1Md_F2 LINE L1 6204 6570 -12 4 1559 1365 299 30 5 chr3 127749013 127749217 -31850566 - MTEb LTR MaLR -170 209 6 4 1559 273 272 80 14 chr3 127749218 127749330 -31850453 + L2a LINE L2 3248 3413 -13 4 1559 4098 39 0 13 chr3 127749938 127750409 -31849374 + L1Md_F3 LINE L1 6106 6570 -14 4 1559 990 163 14 0 chr3 127750924 127751071 -31848712 + B1_Mur2 SINE Alu 1 149 0 4 1559 22 0 0 0 chr3 127752021 127752043 -31847740 + AT_rich Low_complexity Low_complexity 1 22 0 4 1559 275 375 49 24 chr3 127752984 127753148 -31846635 + MIRb SINE MIR 22 189 -79 4 1559 362 311 73 6 chr3 127753300 127753465 -31846318 + MER5B DNA MER1_type 1 176 -2 4 1559 1113 109 10 107 chr3 127754099 127754304 -31845479 - B2_Mm2 SINE B2 -10 185 1 4 1559 1041 84 7 0 chr3 127754738 127754881 -31844902 + B2_Mm2 SINE B2 1 144 -51 4 1559 1306 80 149 0 chr3 127754892 127755080 -31844703 - L1Md_F3 LINE L1 -11 6571 6356 4 1559 1209 75 6 39 chr3 127755077 127755257 -31844526 + L1Md_F2 LINE L1 6409 6582 0 4 1559 6448 35 1 0 chr3 127755257 127756009 -31843774 - L1Md_F3 LINE L1 -226 6358 5606 4 1559 503 62 8 207 chr3 127756009 127756130 -31843653 + B2_Mm1t SINE B2 96 192 -1 4 1559 300 297 159 21 chr3 127756207 127756457 -31843326 - L1MA5 LINE L1 -1 6299 6018 4 1559 468 0 0 0 chr3 127756568 127756620 -31843163 + (TCTA)n Simple_repeat Simple_repeat 4 55 0 4 1559 31 0 0 0 chr3 127756620 127756651 -31843132 + AT_rich Low_complexity Low_complexity 1 31 0 4 1559 229 284 75 0 chr3 127756655 127756722 -31843061 - ID4 SINE ID -10 73 2 4 1559 22 94 0 0 chr3 127756748 127756812 -31842971 + AT_rich Low_complexity Low_complexity 1 64 0 4 1559 287 320 67 0 chr3 127757649 127757660 -31842123 - ID_B1 SINE B4 -54 170 91 4 1559 316 266 0 0 chr3 127757660 127757724 -31842059 - PB1D10 SINE Alu -44 73 10 4 1559 297 109 0 0 chr3 127758093 127758139 -31841644 + (CA)n Simple_repeat Simple_repeat 2 47 0 4 1559 760 191 6 6 chr3 127758154 127758333 -31841450 + (CA)n Simple_repeat Simple_repeat 2 180 0 4 1559 1218 230 180 6 chr3 127758419 127758760 -31841023 + MTD LTR MaLR 1 401 -18 4 1559 2068 239 154 65 chr3 127758760 127759482 -31840301 + MTD-int LTR MaLR 1 786 -472 4 1559 419 292 0 48 chr3 127759600 127759726 -31840057 - Lx8 LINE L1 -384 7089 6970 4 1559 274 292 140 9 chr3 127759728 127759835 -31839948 - Lx8 LINE L1 -785 6688 6568 4 1559 658 341 114 47 chr3 127759837 127760609 -31839174 - Lx8 LINE L1 -1063 6410 5587 4 1559 546 16 0 0 chr3 127760621 127760684 -31839099 + (TCTA)n Simple_repeat Simple_repeat 4 66 0 4 1559 5144 72 17 0 chr3 127760688 127761323 -31838460 - L1_Mus4 LINE L1 -7 6629 5984 4 1559 4118 96 22 1 chr3 127761324 127762056 -31837727 + L1_Mus4 LINE L1 5225 5968 -668 4 1559 626 150 243 0 chr3 127762051 127762191 -31837592 - L1M1 LINE L1 -688 5615 5442 4 1559 262 77 77 0 chr3 127762300 127762339 -31837444 - ORR1B1 LTR MaLR -8 386 345 4 1559 1251 124 34 30 chr3 127762332 127762565 -31837218 - ORR1B1 LTR MaLR -160 234 1 4 1559 327 225 78 42 chr3 127762738 127762882 -31836901 - Lx6 LINE L1 -469 5702 5569 4 1559 351 0 0 0 chr3 127762986 127763025 -31836758 + (CA)n Simple_repeat Simple_repeat 2 40 0 4 1559 909 58 0 0 chr3 127763664 127763784 -31835999 + (GA)n Simple_repeat Simple_repeat 1 120 0 4 1559 270 287 45 41 chr3 127763913 127764048 -31835735 - RSINE1 SINE B4 -153 139 5 4 1559 256 200 27 0 chr3 127764085 127764160 -31835623 + (TATATG)n Simple_repeat Simple_repeat 1 77 0 4 1559 487 349 39 39 chr3 127764160 127764342 -31835441 - B3A SINE B2 -16 182 1 4 1559 21 0 0 0 chr3 127764345 127764366 -31835417 + AT_rich Low_complexity Low_complexity 1 21 0 4 1559 669 139 48 32 chr3 127764377 127764503 -31835280 + B1_Mur2 SINE Alu 14 141 -8 4 1559 21 36 0 0 chr3 127765223 127765251 -31834532 + AT_rich Low_complexity Low_complexity 1 28 0 4 1559 512 312 82 6 chr3 127765394 127765565 -31834218 - MER20 DNA MER1_type -5 214 31 4 1559 234 333 36 0 chr3 127765652 127765736 -31834047 + MIRb SINE MIR 20 106 -162 4 1559 2244 238 44 19 chr3 127766418 127766958 -31832825 + RMER15 LTR ERVL 22 575 0 4 1559 327 271 17 50 chr3 127767958 127768030 -31831753 - RMER17C LTR ERVK -116 294 225 4 1559 252 0 0 0 chr3 127768030 127768058 -31831725 + (GA)n Simple_repeat Simple_repeat 2 29 0 4 1559 824 149 1 66 chr3 127768058 127768248 -31831535 - RMER17C LTR ERVK -239 171 1 4 1559 378 0 0 0 chr3 127768375 127768417 -31831366 + (TTTA)n Simple_repeat Simple_repeat 4 45 0 4 1559 831 214 118 0 chr3 127768421 127768608 -31831175 - B3 SINE B2 -6 210 2 4 1559 737 275 227 25 chr3 127769174 127769416 -31830367 + B4 SINE B4 2 292 0 4 1559 432 104 0 0 chr3 127769476 127769543 -31830240 + (CA)n Simple_repeat Simple_repeat 1 67 0 4 1559 322 321 28 0 chr3 127769707 127769816 -31829967 - L2a LINE L2 -19 3407 3296 5 1559 978 256 77 6 chr3 127770077 127770400 -31829383 + ERVL-B4-int LTR ERVL 5369 5714 0 5 1559 623 302 102 37 chr3 127770400 127770782 -31829001 + Ricksha_c DNA MuDR 348 735 -1313 5 1559 1462 308 57 25 chr3 127770893 127771578 -31828205 - L2a LINE L2 -468 2951 2245 5 1559 231 146 0 0 chr3 127771831 127771886 -31827897 + (T)n Simple_repeat Simple_repeat 1 55 0 5 1559 916 102 3 0 chr3 127772683 127772828 -31826955 - B1_Mm SINE Alu 0 149 1 5 1559 305 240 16 23 chr3 127772721 127772849 -31826934 - ORR1B2-int LTR MaLR -755 754 628 5 1559 1397 76 54 0 chr3 127772875 127773059 -31826724 - B2_Mm2 SINE B2 -1 194 1 5 1559 250 299 26 0 chr3 127773395 127773472 -31826311 - MLT1F LTR MaLR -434 114 36 5 1559 234 329 51 90 chr3 127773808 127773985 -31825798 - B4 SINE B4 -48 244 75 5 1559 1371 214 82 32 chr3 127774208 127774550 -31825233 - ORR1B2 LTR MaLR -8 359 1 5 1559 296 349 94 69 chr3 127774626 127774903 -31824880 - L2a LINE L2 -26 3400 3117 5 1559 233 266 83 68 chr3 127774903 127775036 -31824747 - L2a LINE L2 -2290 1129 995 5 1559 251 296 45 0 chr3 127775730 127775818 -31823965 + MER5A1 DNA MER1_type 56 147 -19 5 1559 347 335 10 181 chr3 127775969 127776162 -31823621 + RSINE1 SINE B4 2 161 -4 5 1559 4076 48 2 2 chr3 127776203 127776680 -31823103 + L1Md_F2 LINE L1 6106 6582 0 5 1559 975 117 0 0 chr3 127777531 127777711 -31822072 + (CA)n Simple_repeat Simple_repeat 1 180 0 5 1559 30 0 0 0 chr3 127778090 127778120 -31821663 + AT_rich Low_complexity Low_complexity 1 30 0 5 1559 1052 283 24 14 chr3 127778150 127778437 -31821346 + B4A SINE B4 1 290 -2 5 1559 405 235 57 25 chr3 127778447 127778604 -31821179 + (CATATA)n Simple_repeat Simple_repeat 3 164 0 5 1559 258 333 83 0 chr3 127778701 127778773 -31821010 - ID4_ SINE ID 0 83 6 5 1559 318 98 0 19 chr3 127779139 127779191 -31820592 + Lx5 LINE L1 6296 6346 -704 5 1559 3506 148 179 22 chr3 127779192 127779362 -31820421 - RLTR25B LTR ERVK -2 1101 809 5 1559 306 0 0 0 chr3 127779362 127779396 -31820387 + (TCTG)n Simple_repeat Simple_repeat 3 36 0 5 1559 3506 194 72 35 chr3 127779396 127780051 -31819732 - RLTR25B LTR ERVK -220 808 125 5 1559 513 0 0 0 chr3 127780051 127780108 -31819675 + (CA)n Simple_repeat Simple_repeat 2 58 0 5 1559 3506 194 72 35 chr3 127780108 127780232 -31819551 - RLTR25B LTR ERVK -904 124 4 5 1559 3793 160 59 3 chr3 127780242 127780906 -31818877 + Lx5 LINE L1 6349 7049 -1 5 1559 260 266 0 0 chr3 127780994 127781058 -31818725 - MYSERV6-int LTR ERVK -7655 1304 1241 5 1559 414 181 0 57 chr3 127781065 127781153 -31818630 + BGLII LTR ERVK 339 421 0 5 1559 2784 180 19 4 chr3 127781277 127781795 -31817988 + RLTR11A LTR ERVK 1 526 -2 5 1559 27 49 0 0 chr3 127782337 127782378 -31817405 + AT_rich Low_complexity Low_complexity 1 41 0 5 1559 21 36 0 0 chr3 127783088 127783116 -31816667 + AT_rich Low_complexity Low_complexity 1 28 0 5 1559 229 234 91 0 chr3 127783827 127783904 -31815879 - RSINE1 SINE B4 -1 164 81 5 1559 1188 75 0 0 chr3 127786238 127786385 -31813398 - B1_Mus2 SINE Alu 0 147 1 5 1559 25 31 0 0 chr3 127786573 127786605 -31813178 + AT_rich Low_complexity Low_complexity 1 32 0 5 1559 414 0 0 0 chr3 127786839 127786885 -31812898 + (TG)n Simple_repeat Simple_repeat 1 46 0 5 1559 817 271 140 0 chr3 127786994 127787230 -31812553 + B4 SINE B4 2 270 -22 5 1559 582 114 0 0 chr3 127787230 127787318 -31812465 + (CA)n Simple_repeat Simple_repeat 1 88 0 5 1559 459 0 0 0 chr3 127787318 127787368 -31812415 + (GA)n Simple_repeat Simple_repeat 2 52 0 5 1559 483 323 76 0 chr3 127787391 127787549 -31812234 + B3A SINE B2 7 176 -22 5 1559 22 0 0 0 chr3 127787766 127787788 -31811995 + AT_rich Low_complexity Low_complexity 1 22 0 5 1559 789 336 94 29 chr3 127787971 127788416 -31811367 - MER21B LTR ERV1 -38 825 352 5 1559 432 0 0 0 chr3 127788594 127788642 -31811141 + (TTTC)n Simple_repeat Simple_repeat 3 50 0 5 1559 28 0 0 0 chr3 127788643 127788671 -31811112 + AT_rich Low_complexity Low_complexity 1 28 0 5 1559 674 55 11 0 chr3 127788889 127788980 -31810803 + (TTC)n Simple_repeat Simple_repeat 2 93 0 5 1559 877 109 27 0 chr3 127788962 127789109 -31810674 + (TCCC)n Simple_repeat Simple_repeat 3 153 0 5 1559 513 0 0 0 chr3 127789109 127789166 -31810617 + (TTTC)n Simple_repeat Simple_repeat 4 60 0 5 1559 419 91 346 48 chr3 127789166 127789270 -31810513 - B2_Mm2 SINE B2 -14 181 47 5 1559 829 163 7 13 chr3 127789336 127789485 -31810298 - B2_Mm1t SINE B2 -14 179 32 5 1559 317 275 8 84 chr3 127790067 127790186 -31809597 - RSINE1 SINE B4 0 165 56 5 1559 591 92 10 0 chr3 127790952 127791050 -31808733 + L1_Mus2 LINE L1 6465 6563 -3 5 1559 297 0 0 0 chr3 127791102 127791135 -31808648 + (CA)n Simple_repeat Simple_repeat 2 34 0 5 1559 322 296 87 47 chr3 127792493 127792558 -31807225 - HAL1-3A_ME LINE L1 -728 2130 2055 5 1559 814 238 48 14 chr3 127792558 127792767 -31807016 - B3 SINE B2 0 216 1 5 1559 322 296 87 47 chr3 127792767 127792850 -31806933 - HAL1-3A_ME LINE L1 -804 2054 1977 5 1559 2853 297 58 48 chr3 127792966 127794943 -31804840 + Lx7 LINE L1 5293 7290 -406 5 1560 495 276 51 29 chr3 127795649 127795787 -31803996 - B1F SINE Alu -1 148 8 5 1560 22 0 0 0 chr3 127798314 127798336 -31801447 + AT_rich Low_complexity Low_complexity 1 22 0 5 1560 436 310 34 8 chr3 127798352 127798469 -31801314 - RSINE1 SINE B4 -17 148 29 5 1560 189 0 0 0 chr3 127798587 127798608 -31801175 + (T)n Simple_repeat Simple_repeat 1 21 0 5 1560 200 100 25 0 chr3 127798846 127798886 -31800897 + (TTTTTG)n Simple_repeat Simple_repeat 2 42 0 5 1560 256 143 0 35 chr3 127798897 127798955 -31800828 + CT-rich Low_complexity Low_complexity 1 56 0 5 1560 764 231 32 136 chr3 127798970 127799280 -31800503 - Lx5 LINE L1 -5 7045 6768 5 1560 226 289 119 34 chr3 127801197 127801315 -31798468 + MIRb SINE MIR 98 225 -43 5 1560 1452 182 80 3 chr3 127802480 127802767 -31797016 - RLTR27 LTR ERVK 0 309 1 5 1560 180 0 0 0 chr3 127803426 127803446 -31796337 + (A)n Simple_repeat Simple_repeat 1 20 0 5 1560 1295 63 6 0 chr3 127804245 127804419 -31795364 + (TCC)n Simple_repeat Simple_repeat 3 177 0 5 1560 22 56 0 0 chr3 127805062 127805098 -31794685 + AT_rich Low_complexity Low_complexity 1 36 0 5 1560 642 246 35 12 chr3 127805117 127805290 -31794493 - B3A SINE B2 -18 180 4 5 1560 525 32 0 0 chr3 127805375 127805438 -31794345 + (TTCC)n Simple_repeat Simple_repeat 3 65 0 5 1560 324 0 0 0 chr3 127805458 127805494 -31794289 + (T)n Simple_repeat Simple_repeat 1 36 0 5 1560 366 165 30 40 chr3 127805751 127805852 -31793931 - L1Md_F2 LINE L1 -1 6581 6482 5 1560 1314 144 375 59 chr3 127806682 127807021 -31792762 + RLTR41 LTR ERV1 1 446 0 5 1560 271 320 123 46 chr3 127808061 127808280 -31791503 + MIRb SINE MIR 19 254 -14 5 1560 530 288 8 8 chr3 127809121 127809240 -31790543 + B1F SINE Alu 1 119 -30 5 1560 900 74 0 0 chr3 127809240 127809361 -31790422 + (GAA)n Simple_repeat Simple_repeat 3 123 0 5 1560 186 133 0 0 chr3 127810301 127810331 -31789452 + (TTTTC)n Simple_repeat Simple_repeat 1 30 0 5 1560 831 170 0 0 chr3 127810425 127810578 -31789205 + CT-rich Low_complexity Low_complexity 4 156 0 5 1560 588 65 0 0 chr3 127810579 127810656 -31789127 + (TTCTC)n Simple_repeat Simple_repeat 4 80 0 5 1560 575 252 55 0 chr3 127810659 127810786 -31788997 - B1_Mur1 SINE Alu -15 134 1 5 1560 191 204 20 0 chr3 127811235 127811284 -31788499 + CT-rich Low_complexity Low_complexity 3 52 0 5 1560 352 221 48 0 chr3 127813071 127813175 -31786608 - Lx9 LINE L1 -1 7643 7535 5 1560 486 0 0 0 chr3 127813175 127813229 -31786554 + (CA)n Simple_repeat Simple_repeat 2 55 0 5 1560 248 75 50 0 chr3 127813244 127813284 -31786499 - Lx9 LINE L1 -180 7464 7423 5 1560 618 294 134 60 chr3 127813466 127813734 -31786049 + B4A SINE B4 5 292 0 5 1560 2326 163 10 12 chr3 127813870 127814273 -31785510 - MTB_Mm LTR MaLR -5 402 1 5 1560 744 146 151 36 chr3 127814273 127814465 -31785318 - MTB_Mm-int LTR MaLR 0 1258 1045 5 1560 1801 205 166 13 chr3 127814491 127814960 -31784823 - RMER1B Other Other -33 1033 493 5 1560 1026 218 119 45 chr3 127814964 127815233 -31784550 - RMER1B Other Other -733 333 45 5 1560 927 187 59 87 chr3 127815285 127815571 -31784212 - MTB_Mm-int LTR MaLR -197 1061 815 5 1560 364 321 9 0 chr3 127815497 127815606 -31784177 + MLT1C LTR MaLR 37 146 -321 5 1560 3381 201 42 86 chr3 127815741 127816743 -31783040 + RMER17B LTR ERVK 1 958 0 5 1560 253 319 139 17 chr3 127817651 127817766 -31782017 + MIRb SINE MIR 4 132 -136 5 1560 450 0 0 0 chr3 127818120 127818170 -31781613 + (CAA)n Simple_repeat Simple_repeat 2 51 0 5 1560 254 303 90 10 chr3 127818224 127818324 -31781459 + PB1D7 SINE Alu 2 109 -11 5 1560 246 426 7 14 chr3 127819721 127819859 -31779924 + MIRb SINE MIR 47 183 -85 5 1560 531 0 0 0 chr3 127821513 127821572 -31778211 + (GA)n Simple_repeat Simple_repeat 1 59 0 5 1560 406 333 0 35 chr3 127822046 127822161 -31777622 - PB1D7 SINE Alu 0 120 10 5 1560 268 325 88 0 chr3 127822562 127822676 -31777107 - Arthur1B DNA Tip100 -1101 124 1 5 1560 240 268 18 0 chr3 127825886 127825942 -31773841 - MIRm SINE MIR -17 259 203 5 1560 200 298 75 66 chr3 127825972 127826160 -31773623 + MIR SINE MIR 7 204 -64 5 1560 31 26 0 0 chr3 127826248 127826286 -31773497 + AT_rich Low_complexity Low_complexity 1 38 0 5 1560 575 305 53 8 chr3 127826447 127826711 -31773072 - B4A SINE B4 -13 279 4 5 1560 266 308 13 0 chr3 127826734 127826812 -31772971 + ID4_ SINE ID 1 79 -4 5 1560 725 210 0 34 chr3 127828621 127828769 -31771014 + B1_Mur1 SINE Alu 6 148 -1 5 1560 411 209 155 25 chr3 127828823 127828977 -31770806 - L1MC1 LINE L1 -347 5997 5812 5 1560 237 65 0 0 chr3 127828977 127829008 -31770775 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 5 1560 411 206 160 29 chr3 127829008 127829062 -31770721 - L1MC1 LINE L1 -522 5811 5762 5 1560 386 241 7 189 chr3 127829069 127829212 -31770571 + MTE2b LTR MaLR 1 117 -262 5 1560 272 318 23 0 chr3 127829246 127829334 -31770449 + ID_B1 SINE B4 135 224 0 5 1560 182 143 0 20 chr3 127829334 127829384 -31770399 + A-rich Low_complexity Low_complexity 6 54 0 6 1560 342 0 0 0 chr3 127829407 127829445 -31770338 + (CAA)n Simple_repeat Simple_repeat 2 39 0 6 1560 297 0 0 0 chr3 127830248 127830281 -31769502 + (TG)n Simple_repeat Simple_repeat 2 34 0 6 1560 276 255 65 9 chr3 127830299 127830406 -31769377 + Lx9 LINE L1 5892 6004 -1640 6 1560 1235 293 78 32 chr3 127830432 127831054 -31768729 + Lx9 LINE L1 6089 6871 -773 6 1560 25 65 0 0 chr3 127832033 127832079 -31767704 + AT_rich Low_complexity Low_complexity 1 46 0 6 1560 362 327 105 23 chr3 127832337 127832556 -31767227 - MLT1K LTR MaLR 0 595 359 6 1560 260 279 54 78 chr3 127832733 127832900 -31766883 + L1MEg LINE L1 1130 1292 -4950 6 1560 234 216 22 33 chr3 127832978 127833069 -31766714 + A-rich Low_complexity Low_complexity 5 94 0 6 1560 333 376 25 15 chr3 127833171 127833371 -31766412 + L1MEg LINE L1 1502 1703 -4539 6 1560 327 221 59 0 chr3 127833644 127833712 -31766071 + ID4_ SINE ID 2 73 -10 6 1560 349 200 108 69 chr3 127833731 127833833 -31765950 + PB1D9 SINE Alu 1 106 -14 6 1560 539 63 25 0 chr3 127833833 127833912 -31765871 + (CAAT)n Simple_repeat Simple_repeat 4 84 0 6 1560 524 219 101 0 chr3 127833957 127834076 -31765707 + B3 SINE B2 79 209 -7 6 1560 315 301 29 22 chr3 127834082 127834218 -31765565 + L1MEg LINE L1 3283 3419 -2727 6 1560 1047 219 24 14 chr3 127834373 127834581 -31765202 - B3 SINE B2 0 216 7 6 1560 868 110 14 29 chr3 127834760 127834900 -31764883 - B1_Mus2 SINE Alu 0 147 10 6 1560 295 295 74 85 chr3 127835011 127835179 -31764604 + MER5A1 DNA MER1_type 1 166 0 6 1560 568 329 79 58 chr3 127835438 127835767 -31764016 - MLT1E3 LTR MaLR -3 621 286 6 1560 356 313 7 64 chr3 127835774 127835914 -31763869 - MLT1E3 LTR MaLR -488 139 8 6 1560 989 142 165 5 chr3 127836406 127836612 -31763171 + RMER4B LTR ERVK 17 255 -330 6 1560 825 30 0 0 chr3 127836692 127836792 -31762991 + (GAA)n Simple_repeat Simple_repeat 3 102 0 6 1560 572 0 0 82 chr3 127836792 127836877 -31762906 + (CAA)n Simple_repeat Simple_repeat 1 78 0 6 1560 747 231 157 60 chr3 127836901 127837168 -31762615 + RMER4B LTR ERVK 279 571 -14 6 1560 277 303 0 15 chr3 127837983 127838050 -31761733 - B3A SINE B2 -18 180 115 6 1560 516 296 85 42 chr3 127837995 127838231 -31761552 - B4A SINE B4 -2 290 45 6 1560 221 236 140 131 chr3 127838143 127838250 -31761533 - B3A SINE B2 -77 121 14 6 1560 288 0 0 0 chr3 127838255 127838287 -31761496 + (TA)n Simple_repeat Simple_repeat 2 33 0 6 1560 24 0 0 0 chr3 127839261 127839285 -31760498 + AT_rich Low_complexity Low_complexity 1 24 0 6 1560 875 115 7 0 chr3 127839582 127839721 -31760062 + (TTTC)n Simple_repeat Simple_repeat 2 141 0 6 1560 198 0 0 0 chr3 127840003 127840025 -31759758 + (T)n Simple_repeat Simple_repeat 1 22 0 6 1560 200 97 32 0 chr3 127840475 127840506 -31759277 + (GGAGA)n Simple_repeat Simple_repeat 4 35 0 6 1560 25 0 0 0 chr3 127840713 127840738 -31759045 + AT_rich Low_complexity Low_complexity 1 25 0 6 1560 33896 34 0 0 chr3 127840910 127846547 -31753236 + L1Md_T LINE L1 1 5589 -297 6 1560 8988 8 0 0 chr3 127846547 127847570 -31752213 + L1Md_T LINE L1 5590 6585 0 6 1560 186 50 49 24 chr3 127849166 127849207 -31750576 + (TTTG)n Simple_repeat Simple_repeat 3 44 0 6 1560 191 36 0 35 chr3 127849207 127849236 -31750547 + (TTA)n Simple_repeat Simple_repeat 3 30 0 6 1560 472 219 92 19 chr3 127849663 127849838 -31749945 - MER33 DNA MER1_type -133 191 1 6 1560 27 49 0 0 chr3 127851057 127851098 -31748685 + AT_rich Low_complexity Low_complexity 1 41 0 6 1560 252 0 0 0 chr3 127851691 127851719 -31748064 + (T)n Simple_repeat Simple_repeat 1 28 0 6 1560 288 0 0 0 chr3 127853115 127853147 -31746636 + (TTCA)n Simple_repeat Simple_repeat 4 35 0 6 1560 963 209 10 36 chr3 127853609 127853803 -31745980 - B3 SINE B2 -27 189 1 6 1560 234 0 0 0 chr3 127853806 127853832 -31745951 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 6 1560 291 377 44 31 chr3 127854697 127854856 -31744927 + MER63A DNA AcHobo 47 207 -3 6 1560 198 103 0 0 chr3 127856356 127856385 -31743398 + (CCCCG)n Simple_repeat Simple_repeat 1 29 0 6 1560 450 127 0 0 chr3 127856779 127856850 -31742933 + (CA)n Simple_repeat Simple_repeat 2 72 0 6 1560 421 314 34 0 chr3 127857081 127857199 -31742584 - MLT1A0 LTR MaLR -52 313 192 6 1560 195 42 0 0 chr3 127857273 127857297 -31742486 + (CA)n Simple_repeat Simple_repeat 2 25 0 6 1560 364 325 74 56 chr3 127857936 127858206 -31741577 + L2a LINE L2 3057 3331 -95 6 1560 246 318 35 78 chr3 127858323 127858439 -31741344 + MTEb LTR MaLR 90 200 -159 6 1560 262 250 0 0 chr3 127858517 127858573 -31741210 + MTEb LTR MaLR 296 351 -28 6 1560 470 168 0 9 chr3 127858573 127858687 -31741096 + (TG)n Simple_repeat Simple_repeat 1 113 0 6 1560 243 170 0 36 chr3 127858687 127858742 -31741041 - B4 SINE B4 0 292 240 6 1560 252 77 0 0 chr3 127859146 127859185 -31740598 + (TCTG)n Simple_repeat Simple_repeat 1 39 0 6 1560 339 242 25 16 chr3 127859374 127859496 -31740287 + L1M4 LINE L1 5325 5447 -731 6 1560 212 346 0 25 chr3 127859593 127859673 -31740110 - MIRb SINE MIR -3 265 188 6 1560 282 297 0 13 chr3 127859686 127859761 -31740022 + ID4_ SINE ID 2 75 -8 6 1560 21 0 0 0 chr3 127859814 127859835 -31739948 + AT_rich Low_complexity Low_complexity 1 21 0 6 1560 392 264 28 9 chr3 127859847 127859954 -31739829 + PB1D10 SINE Alu 1 109 -8 6 1560 1086 159 3 3 chr3 127860003 127860362 -31739421 + (CCAA)n Simple_repeat Simple_repeat 1 359 0 6 1560 581 290 58 11 chr3 127860388 127860576 -31739207 - B3A SINE B2 -1 197 1 6 1560 22 0 0 0 chr3 127860810 127860832 -31738951 + AT_rich Low_complexity Low_complexity 1 22 0 6 1560 21 36 0 0 chr3 127861678 127861706 -31738077 + AT_rich Low_complexity Low_complexity 1 28 0 6 1560 212 140 0 39 chr3 127861872 127861924 -31737859 + (TATATG)n Simple_repeat Simple_repeat 4 53 0 6 1560 983 212 36 15 chr3 127864330 127864526 -31735257 - B3 SINE B2 0 216 17 6 1560 588 214 0 52 chr3 127864679 127864832 -31734951 - B1F SINE Alu 0 149 5 6 1560 756 0 0 0 chr3 127866112 127866196 -31733587 + (TTC)n Simple_repeat Simple_repeat 2 85 0 6 1560 1180 49 0 0 chr3 127867929 127868071 -31731712 - B1_Mus1 SINE Alu -5 143 2 6 1560 1599 247 87 3 chr3 127868397 127868775 -31731008 - MTD LTR MaLR -7 412 3 6 1560 34 0 0 0 chr3 127869519 127869553 -31730230 + AT_rich Low_complexity Low_complexity 1 34 0 6 1560 720 328 28 0 chr3 127869589 127869766 -31730017 + B3A SINE B2 1 182 -16 6 1560 2769 73 31 19 chr3 127869810 127870209 -31729574 - L1Md_F2 LINE L1 -146 6436 6029 6 1560 686 85 8 57 chr3 127870209 127870333 -31729450 + L1Md_F2 LINE L1 6453 6570 -12 6 1560 2769 73 31 19 chr3 127870333 127870349 -31729434 - L1Md_F2 LINE L1 -554 6028 6016 6 1560 3430 61 2 9 chr3 127870349 127870794 -31728989 + L1_Mus1 LINE L1 6125 6566 -1 6 1560 483 271 188 0 chr3 127870948 127871118 -31728665 - Tigger7 DNA MER2_type -1 2490 2293 6 1560 264 339 62 0 chr3 127871285 127871397 -31728386 - Tigger7 DNA MER2_type -1907 584 466 6 1560 241 236 68 14 chr3 127871385 127871458 -31728325 - RSINE1 SINE B4 -62 103 27 6 1560 938 34 8 0 chr3 127871527 127871645 -31728138 + (TC)n Simple_repeat Simple_repeat 1 119 0 6 1560 341 264 84 16 chr3 127871685 127871892 -31727891 - L1MA4 LINE L1 -414 5883 5662 6 1560 1045 270 86 10 chr3 127871927 127872230 -31727553 - MTD LTR MaLR -13 406 81 6 1560 462 288 129 41 chr3 127872245 127872335 -31727448 - L1MA4 LINE L1 -2060 4083 4003 6 1560 1440 242 90 10 chr3 127872335 127872723 -31727060 + MTD LTR MaLR 1 419 0 6 1560 462 288 129 41 chr3 127872723 127873073 -31726710 - L1MA4 LINE L1 -2141 4002 3604 6 1560 6106 67 33 8 chr3 127875721 127876569 -31723214 + Lx3_Mus LINE L1 6141 7009 0 6 1560 23 0 0 0 chr3 127877163 127877186 -31722597 + AT_rich Low_complexity Low_complexity 1 23 0 6 1560 292 223 32 11 chr3 127877202 127877297 -31722486 + (TG)n Simple_repeat Simple_repeat 1 97 0 6 1560 572 296 61 6 chr3 127877420 127877583 -31722200 - B3A SINE B2 -22 176 5 6 1560 495 33 0 0 chr3 127878068 127878129 -31721654 + (CAAAC)n Simple_repeat Simple_repeat 4 64 0 6 1560 344 330 10 0 chr3 127878171 127878271 -31721512 + PB1D7 SINE Alu 10 110 -10 6 1560 29 60 0 0 chr3 127878310 127878360 -31721423 + AT_rich Low_complexity Low_complexity 1 50 0 6 1560 233 295 67 11 chr3 127878438 127878527 -31721256 + MER72B LTR ERV1 124 217 -551 6 1560 200 119 48 48 chr3 127878689 127878751 -31721032 + (TA)n Simple_repeat Simple_repeat 2 63 0 6 1560 486 297 30 30 chr3 127878794 127878926 -31720857 - RSINE1 SINE B4 -31 134 3 6 1560 223 312 0 0 chr3 127879575 127879655 -31720128 + (TCTG)n Simple_repeat Simple_repeat 4 83 0 6 1560 253 158 34 34 chr3 127879580 127879639 -31720144 + (TCTCTG)n Simple_repeat Simple_repeat 2 60 0 6 1560 407 294 80 104 chr3 127879674 127880001 -31719782 + ORR1E LTR MaLR 3 321 -38 6 1560 528 312 23 0 chr3 127880259 127880477 -31719306 - L1M3 LINE L1 -744 5568 5346 6 1560 640 219 66 0 chr3 127880488 127880625 -31719158 + B1_Mm SINE Alu 1 146 -1 6 1560 545 285 93 47 chr3 127880669 127881219 -31718564 - L1M3 LINE L1 -796 5350 4765 6 1560 519 45 0 0 chr3 127881434 127881500 -31718283 + (TG)n Simple_repeat Simple_repeat 1 66 0 6 1560 857 318 97 8 chr3 127881500 127881747 -31718036 - B4A SINE B4 -23 269 1 6 1560 438 171 0 0 chr3 127882101 127882224 -31717559 + (TCTG)n Simple_repeat Simple_repeat 4 126 0 6 1560 540 0 0 0 chr3 127882224 127882284 -31717499 + (GA)n Simple_repeat Simple_repeat 1 60 0 6 1560 592 264 0 8 chr3 127882911 127883041 -31716742 + RSINE1 SINE B4 4 132 -33 6 1560 438 329 51 0 chr3 127883065 127883202 -31716581 + B3A SINE B2 3 146 -52 6 1560 468 0 0 0 chr3 127884693 127884745 -31715038 + (TG)n Simple_repeat Simple_repeat 1 52 0 6 1560 394 263 21 0 chr3 127884759 127884854 -31714929 - B3 SINE B2 -47 169 73 6 1560 276 304 74 86 chr3 127884857 127885019 -31714764 + B4 SINE B4 109 268 -24 6 1560 213 250 39 0 chr3 127885028 127885080 -31714703 + (CATG)n Simple_repeat Simple_repeat 1 54 0 6 1560 573 135 0 0 chr3 127885081 127885207 -31714576 + (CA)n Simple_repeat Simple_repeat 2 127 0 6 1560 314 45 0 22 chr3 127885468 127885513 -31714270 + (TG)n Simple_repeat Simple_repeat 2 45 0 6 1560 262 331 54 101 chr3 127885523 127885671 -31714112 + MamGypLTR1d LTR Gypsy 69 209 -604 6 1560 1058 302 31 56 chr3 127885909 127886267 -31713516 - ORR1E LTR MaLR -10 349 1 6 1560 402 254 79 35 chr3 127886346 127886460 -31713323 + RSINE1 SINE B4 4 122 -43 7 1560 603 27 0 0 chr3 127886461 127886534 -31713249 + (CA)n Simple_repeat Simple_repeat 1 73 0 7 1560 465 19 0 0 chr3 127887371 127887425 -31712358 + (GGA)n Simple_repeat Simple_repeat 3 56 0 7 1560 306 0 0 0 chr3 127887858 127887892 -31711891 + (TA)n Simple_repeat Simple_repeat 2 35 0 7 1560 332 336 35 14 chr3 127888502 127888644 -31711139 - MER3 DNA MER1_type -63 146 2 7 1560 45 45 0 0 chr3 127889155 127889221 -31710562 + AT_rich Low_complexity Low_complexity 1 66 0 7 1560 315 0 0 0 chr3 127889671 127889706 -31710077 + (T)n Simple_repeat Simple_repeat 1 35 0 7 1560 719 246 92 5 chr3 127891321 127891505 -31708278 + B3 SINE B2 1 200 -16 7 1560 405 0 0 0 chr3 127891505 127891550 -31708233 + (TAAAA)n Simple_repeat Simple_repeat 5 49 0 7 1560 274 193 0 0 chr3 127893353 127893410 -31706373 - URR1B DNA MER1_type 0 225 169 7 1560 31 0 0 0 chr3 127893605 127893636 -31706147 + AT_rich Low_complexity Low_complexity 1 31 0 7 1560 423 242 0 0 chr3 127893760 127893880 -31705903 + (TA)n Simple_repeat Simple_repeat 2 121 0 7 1560 222 37 0 0 chr3 127893880 127893907 -31705876 + (CA)n Simple_repeat Simple_repeat 2 28 0 7 1560 413 308 5 81 chr3 127897546 127897744 -31702039 - MIR SINE MIR 0 262 80 7 1560 925 330 0 21 chr3 127900502 127900790 -31698993 + B4A SINE B4 11 292 0 7 1560 743 220 126 0 chr3 127905251 127905442 -31694341 - B3 SINE B2 -1 215 1 7 1560 2008 113 174 0 chr3 127905906 127906251 -31693532 - RLTR44A LTR ERVK 0 405 1 7 1560 8487 8 0 0 chr3 127906446 127907878 -31691905 - L1Md_A LINE L1 0 6582 5151 7 1560 468 72 0 0 chr3 127907925 127907994 -31691789 + (TG)n Simple_repeat Simple_repeat 2 70 0 7 1560 355 183 33 16 chr3 127907995 127908056 -31691727 - ID4 SINE ID -11 72 11 7 1560 551 316 89 75 chr3 127908068 127908797 -31690986 - L1MB4 LINE L1 -46 6134 5396 7 1560 184 371 0 33 chr3 127909029 127909121 -31690662 + L2b LINE L2 3287 3375 0 7 1560 542 87 0 12 chr3 127910133 127910215 -31689568 + (TTTTC)n Simple_repeat Simple_repeat 3 83 0 7 1560 306 0 0 0 chr3 127910490 127910524 -31689259 + (GA)n Simple_repeat Simple_repeat 1 34 0 7 1560 372 317 19 0 chr3 127910826 127910930 -31688853 + MER45A DNA Tip100 42 147 -31 7 1560 384 77 0 0 chr3 127911205 127911257 -31688526 + (CCCTAG)n Simple_repeat Simple_repeat 2 53 0 7 1560 410 198 16 16 chr3 127911656 127911779 -31688004 + Lx3A LINE L1 6856 6978 -3 7 1560 738 0 0 0 chr3 127912957 127913039 -31686744 + (TTAGGG)n Simple_repeat Simple_repeat 5 86 0 7 1560 1232 212 20 17 chr3 127913080 127913373 -31686410 - Lx9 LINE L1 -260 7384 7091 7 1560 936 172 18 64 chr3 127913377 127913595 -31686188 + Lx9 LINE L1 6905 7112 -532 7 1560 414 278 14 76 chr3 127913661 127913805 -31685978 - MTD LTR MaLR -15 404 270 7 1560 24 32 0 0 chr3 127914740 127914771 -31685012 + AT_rich Low_complexity Low_complexity 1 31 0 7 1560 354 107 0 0 chr3 127915736 127915792 -31683991 + (TG)n Simple_repeat Simple_repeat 2 57 0 7 1560 362 370 83 32 chr3 127915796 127915872 -31683911 - B4A SINE B4 -3 289 219 7 1560 531 0 0 0 chr3 127915872 127915931 -31683852 + (TTTTG)n Simple_repeat Simple_repeat 2 60 0 7 1560 362 370 83 32 chr3 127915931 127916072 -31683711 - B4A SINE B4 -74 218 62 7 1560 24 0 0 0 chr3 127917354 127917378 -31682405 + AT_rich Low_complexity Low_complexity 1 24 0 7 1560 2615 98 71 0 chr3 127917378 127917785 -31681998 - Lx2 LINE L1 -1 6996 6561 7 1560 1153 136 0 5 chr3 127917785 127917984 -31681799 + L1_Mur1 LINE L1 4537 4734 -1152 7 1560 6760 92 47 1 chr3 127918001 127919006 -31680777 + L1_Mus3 LINE L1 5588 6638 0 7 1560 295 161 0 0 chr3 127919015 127919071 -31680712 + L1_Mur1 LINE L1 4735 4790 -1096 7 1560 404 273 103 40 chr3 127919124 127919250 -31680533 + B3A SINE B2 20 153 -45 7 1560 839 288 57 60 chr3 127919708 127920059 -31679724 - MLT1E3 LTR MaLR -272 352 3 7 1560 22 80 0 0 chr3 127920223 127920273 -31679510 + AT_rich Low_complexity Low_complexity 1 50 0 7 1560 2163 207 27 5 chr3 127921456 127921863 -31677920 - MTC LTR MaLR -5 416 1 7 1560 3779 64 0 0 chr3 127922683 127923155 -31676628 - L1_Mus1 LINE L1 -9 6558 6087 7 1560 397 316 70 42 chr3 127923328 127923470 -31676313 - B1F SINE Alu -1 148 3 7 1560 369 0 0 0 chr3 127923488 127923529 -31676254 + (CAAA)n Simple_repeat Simple_repeat 2 42 0 7 1560 357 82 0 0 chr3 127923571 127923620 -31676163 + (CATA)n Simple_repeat Simple_repeat 2 50 0 7 1560 1169 205 4 15 chr3 127924499 127924761 -31675022 - RMER1C Other Other 0 1342 1084 7 1560 259 351 36 9 chr3 127925810 127925922 -31673861 - PB1D10 SINE Alu -2 115 1 7 1561 258 358 14 7 chr3 127926673 127926811 -31672972 - Lx7 LINE L1 -167 7306 7168 7 1561 1070 253 94 7 chr3 127926892 127927383 -31672400 - Lx7 LINE L1 -1686 6010 5483 7 1561 337 310 8 17 chr3 127927387 127927505 -31672278 + L1_Mur3 LINE L1 4785 4901 -979 7 1561 1180 266 46 3 chr3 127927533 127927921 -31671862 + L1_Mur3 LINE L1 5025 5429 -451 7 1561 3778 33 0 9 chr3 127928301 127928762 -31671021 + L1Md_F3 LINE L1 6128 6584 0 7 1561 2356 35 0 3 chr3 127928766 127929051 -31670732 + L1Md_A LINE L1 6299 6582 0 7 1561 207 0 0 0 chr3 127930112 127930135 -31669648 + (T)n Simple_repeat Simple_repeat 1 23 0 7 1561 292 202 99 20 chr3 127931102 127931203 -31668580 - Lx4B LINE L1 -5 7053 6945 7 1561 803 116 75 7 chr3 127931263 127931410 -31668373 - URR1A DNA MER1_type 0 226 70 7 1561 450 0 0 0 chr3 127932716 127932766 -31667017 + (CA)n Simple_repeat Simple_repeat 2 51 0 7 1561 186 43 0 0 chr3 127934688 127934711 -31665072 + (CA)n Simple_repeat Simple_repeat 2 24 0 7 1561 382 303 15 105 chr3 127935999 127936132 -31663651 + RSINE1 SINE B4 9 129 -36 7 1561 285 355 21 14 chr3 127939480 127939623 -31660160 - MIRc SINE MIR -120 148 5 7 1561 6501 57 2 6 chr3 127939765 127940595 -31659188 + L1Md_F2 LINE L1 5743 6569 -13 7 1561 22 56 0 0 chr3 127940997 127941033 -31658750 + AT_rich Low_complexity Low_complexity 1 36 0 7 1561 2056 36 0 4 chr3 127944102 127944355 -31655428 - L1Md_F2 LINE L1 -1 6581 6330 7 1561 206 391 8 65 chr3 127944734 127944857 -31654926 + L2a LINE L2 3308 3423 -3 7 1561 232 250 0 35 chr3 127946760 127946818 -31652965 - L2 LINE L2 -561 2858 2803 7 1561 386 329 30 61 chr3 127948256 127948421 -31651362 + B3A SINE B2 1 160 -38 7 1561 327 49 0 0 chr3 127948428 127948469 -31651314 + (CAA)n Simple_repeat Simple_repeat 1 41 0 7 1561 686 291 14 54 chr3 127949123 127949345 -31650438 - L3 LINE CR1 -2248 2241 2029 7 1561 282 116 0 0 chr3 127950637 127950680 -31649103 + (AGGGGG)n Simple_repeat Simple_repeat 3 45 0 7 1561 261 217 31 52 chr3 127950741 127950838 -31648945 - L1MA7 LINE L1 -10 6281 6187 7 1561 435 208 208 29 chr3 127950864 127951037 -31648746 - B3 SINE B2 -11 205 2 7 1561 377 253 81 0 chr3 127951077 127951164 -31648619 - B1F SINE Alu -7 142 49 7 1561 470 324 150 9 chr3 127951189 127952128 -31647655 - L1MA7 LINE L1 -136 6155 5068 7 1561 301 234 47 53 chr3 127952125 127952296 -31647487 - L1MA7 LINE L1 -1304 4839 4670 7 1561 215 258 42 73 chr3 127952396 127952492 -31647291 - MIR SINE MIR -127 135 43 7 1561 3096 27 5 31 chr3 127952966 127953353 -31646430 + L1Md_F2 LINE L1 6202 6578 -4 7 1561 249 299 12 38 chr3 127954408 127954488 -31645295 + ID4_ SINE ID 35 112 -40 7 1561 594 293 36 0 chr3 127954512 127954652 -31645131 + B1F SINE Alu 5 149 0 7 1561 740 290 124 24 chr3 127955917 127956327 -31643456 + Charlie7 DNA MER1_type 1639 2089 -523 7 1561 21 71 0 0 chr3 127956575 127956617 -31643166 + AT_rich Low_complexity Low_complexity 1 42 0 7 1561 303 93 0 0 chr3 127956645 127956688 -31643095 + (TG)n Simple_repeat Simple_repeat 2 44 0 7 1561 366 286 36 67 chr3 127956996 127957191 -31642592 - L1MB5 LINE L1 -185 5989 5801 7 1561 291 54 0 0 chr3 127957199 127957236 -31642547 + (CA)n Simple_repeat Simple_repeat 1 37 0 7 1561 2389 204 85 30 chr3 127957243 127957818 -31641965 + RMER19C LTR ERVK 5 611 0 7 1561 655 160 29 0 chr3 127957834 127958009 -31641774 + (CA)n Simple_repeat Simple_repeat 1 180 0 7 1561 259 247 172 0 chr3 127958073 127958166 -31641617 - L1MB5 LINE L1 -428 5746 5638 7 1561 499 241 55 68 chr3 127959201 127959356 -31640427 + L1_Rod LINE L1 5110 5270 -577 7 1561 1123 97 0 0 chr3 127959356 127959501 -31640282 + B1_Mm SINE Alu 1 145 -2 7 1561 499 241 55 68 chr3 127959501 127959581 -31640202 + L1_Rod LINE L1 5271 5342 -505 7 1561 3307 46 7 0 chr3 127959574 127960005 -31639778 + L1Md_F3 LINE L1 5152 5585 -298 7 1561 8485 27 2 2 chr3 127960006 127961004 -31638779 + L1Md_F3 LINE L1 5587 6584 0 7 1561 180 0 0 0 chr3 127961030 127961050 -31638733 + (A)n Simple_repeat Simple_repeat 1 20 0 7 1561 1408 263 66 19 chr3 127961050 127961577 -31638206 + L1_Rod LINE L1 5294 5845 -2 7 1561 3605 16 136 0 chr3 127961993 127962427 -31637356 - MT2_Mm LTR ERVL 0 493 1 7 1561 226 98 19 19 chr3 127962434 127962486 -31637297 + (CAAAA)n Simple_repeat Simple_repeat 2 53 0 7 1561 671 145 0 53 chr3 127963049 127963238 -31636545 + GA-rich Low_complexity Low_complexity 1 179 0 7 1561 243 0 0 0 chr3 127964704 127964731 -31635052 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 7 1561 41 0 0 0 chr3 127965128 127965169 -31634614 + AT_rich Low_complexity Low_complexity 1 41 0 7 1561 354 107 0 0 chr3 127966639 127966695 -31633088 + (TG)n Simple_repeat Simple_repeat 1 56 0 7 1561 632 279 39 0 chr3 127966697 127966851 -31632932 - B3A SINE B2 -38 160 1 7 1561 275 304 89 85 chr3 127967096 127967366 -31632417 - ORR1D2 LTR MaLR -2 368 98 7 1561 242 355 145 33 chr3 127967547 127967684 -31632099 - Cheshire DNA MER1_type -2140 280 136 7 1561 2973 88 0 5 chr3 127967684 127968086 -31631697 - MTB LTR MaLR 0 400 1 7 1561 242 355 145 33 chr3 127968086 127968190 -31631593 - Cheshire DNA MER1_type -2285 135 12 7 1561 2891 57 5 3 chr3 127968235 127968603 -31631180 - L1_Mus1 LINE L1 0 6567 6199 7 1561 2127 68 0 0 chr3 127968603 127968884 -31630899 + L1_Mus1 LINE L1 5929 6209 -358 7 1561 1035 250 112 3 chr3 127968909 127969238 -31630545 - ORR1D2 LTR MaLR -4 366 2 7 1561 252 0 0 0 chr3 127970335 127970363 -31629420 + (CA)n Simple_repeat Simple_repeat 1 28 0 7 1561 211 167 16 48 chr3 127970497 127970560 -31629223 + T-rich Low_complexity Low_complexity 1 61 0 8 1561 225 221 9 152 chr3 127972213 127972325 -31627458 - MER110A LTR ERV1 -332 136 41 8 1561 200 343 45 18 chr3 127972860 127972970 -31626813 + MIRb SINE MIR 100 212 -56 8 1561 343 38 38 0 chr3 127974099 127974152 -31625631 + (TA)n Simple_repeat Simple_repeat 2 56 0 8 1561 1020 185 41 23 chr3 127974664 127974706 -31625077 + URR1A DNA MER1_type 1 39 -187 8 1561 279 0 0 0 chr3 127974706 127974737 -31625046 + (TG)n Simple_repeat Simple_repeat 2 32 0 8 1561 1020 185 41 23 chr3 127974737 127974915 -31624868 + URR1A DNA MER1_type 40 225 -1 8 1561 1213 56 25 0 chr3 127975015 127975176 -31624607 - L1_Mus1 LINE L1 -1 6566 6402 8 1561 1559 58 0 0 chr3 127975176 127975381 -31624402 + L1_Mus1 LINE L1 6201 6405 -162 8 1561 385 59 46 23 chr3 127975570 127975657 -31624126 + (TTTTG)n Simple_repeat Simple_repeat 1 89 0 8 1561 560 80 0 0 chr3 127975658 127975733 -31624050 - B1_Mm SINE Alu 0 147 73 8 1561 216 0 0 0 chr3 127976108 127976132 -31623651 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 8 1561 342 0 0 0 chr3 127976533 127976571 -31623212 + (TG)n Simple_repeat Simple_repeat 1 38 0 8 1561 261 0 0 0 chr3 127976571 127976600 -31623183 + (GA)n Simple_repeat Simple_repeat 1 29 0 8 1561 3538 164 40 24 chr3 127977381 127978061 -31621722 - Lx5 LINE L1 -89 6961 6271 8 1561 1341 186 30 62 chr3 127978058 127978431 -31621352 + Lx5 LINE L1 5896 6256 -794 8 1561 22 0 0 0 chr3 127979001 127979023 -31620760 + AT_rich Low_complexity Low_complexity 1 22 0 8 1561 263 197 14 14 chr3 127979262 127979334 -31620449 + (CAGA)n Simple_repeat Simple_repeat 2 73 0 8 1561 516 68 0 0 chr3 127979419 127979492 -31620291 + (TG)n Simple_repeat Simple_repeat 1 73 0 8 1561 449 293 75 0 chr3 127979496 127979629 -31620154 - RSINE1 SINE B4 -12 153 11 8 1561 301 275 61 81 chr3 127980385 127980484 -31619299 - PB1 SINE Alu -214 100 4 8 1561 1032 230 18 18 chr3 127982261 127982482 -31617301 - URR1B DNA MER1_type -2 223 3 8 1561 23 0 0 0 chr3 127983361 127983384 -31616399 + AT_rich Low_complexity Low_complexity 1 23 0 8 1561 794 168 36 21 chr3 127984480 127984620 -31615163 - B1_Mur4 SINE Alu -8 142 1 8 1561 334 346 36 43 chr3 127984504 127984643 -31615140 - B4 SINE B4 -88 204 67 8 1561 478 334 159 68 chr3 127985240 127985931 -31613852 - Arthur1 DNA Tip100 -2937 1010 257 8 1561 375 338 13 19 chr3 127985956 127986113 -31613670 + B4A SINE B4 5 160 -132 8 1561 206 216 0 0 chr3 127986408 127986445 -31613338 + C-rich Low_complexity Low_complexity 2 38 0 8 1561 252 0 0 0 chr3 127986447 127986475 -31613308 + (CA)n Simple_repeat Simple_repeat 1 28 0 8 1561 445 278 91 26 chr3 127986638 127986962 -31612821 + L1MA6 LINE L1 5945 6274 -26 8 1561 414 288 37 27 chr3 127987071 127987248 -31612535 - B3 SINE B2 -1 192 12 8 1561 892 322 45 4 chr3 127988975 127989240 -31610543 + B4A SINE B4 1 276 -16 8 1561 1090 314 50 3 chr3 127989762 127990104 -31609679 + MTE2b LTR MaLR 22 379 0 8 1561 1062 83 0 53 chr3 127990414 127990566 -31609217 + B1_Mm SINE Alu 2 145 -2 8 1561 363 44 0 0 chr3 127991133 127991178 -31608605 + (CA)n Simple_repeat Simple_repeat 2 46 0 8 1561 447 19 0 0 chr3 127991324 127991376 -31608407 + (TG)n Simple_repeat Simple_repeat 1 52 0 8 1561 478 331 56 60 chr3 127991408 127991681 -31608102 - B4A SINE B4 -18 274 2 8 1561 302 294 45 45 chr3 127992577 127992755 -31607028 + C-rich Low_complexity Low_complexity 2 179 0 8 1561 572 262 0 12 chr3 127992785 127992927 -31606856 + B1_Mur1 SINE Alu 1 134 -13 8 1561 333 283 18 9 chr3 127992953 127993067 -31606716 - PB1D10 SINE Alu -2 115 1 8 1561 284 250 14 14 chr3 127993116 127993185 -31606598 - MTEb LTR MaLR -24 355 287 8 1561 448 71 14 0 chr3 127993660 127993730 -31606053 - L1_Mus2 LINE L1 -1 6565 6495 8 1561 331 340 99 8 chr3 127994068 127994255 -31605528 + MIR SINE MIR 1 207 -61 8 1561 5216 58 4 15 chr3 127994365 127995050 -31604733 + L1Md_F2 LINE L1 5893 6570 -12 8 1561 357 332 185 35 chr3 127995227 127995514 -31604269 - LTR16B LTR ERVL -133 330 1 8 1561 268 345 40 12 chr3 127995695 127995868 -31603915 - Lx8 LINE L1 -195 7278 7101 8 1561 416 343 29 24 chr3 127997682 127997891 -31601892 + Lx8 LINE L1 7037 7246 -227 8 1561 338 326 15 15 chr3 127997908 127998045 -31601738 + RMER15 LTR ERVL 426 562 -13 8 1561 1298 236 124 32 chr3 127998389 127998830 -31600953 + ORR1C2-int LTR MaLR 505 1130 -379 8 1561 1278 85 16 33 chr3 127998830 127999012 -31600771 + B2_Mm2 SINE B2 2 180 -15 8 1561 222 37 0 0 chr3 127999013 127999040 -31600743 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 8 1561 1807 126 98 16 chr3 127999044 127999359 -31600424 + ORR1C2 LTR MaLR 44 384 0 8 1561 21 36 0 0 chr3 127999692 127999720 -31600063 + AT_rich Low_complexity Low_complexity 1 28 0 8 1561 243 0 0 0 chr3 127999729 127999756 -31600027 + (T)n Simple_repeat Simple_repeat 1 27 0 8 1561 189 0 0 0 chr3 127999800 127999821 -31599962 + (T)n Simple_repeat Simple_repeat 1 21 0 8 1561 360 0 0 0 chr3 128000332 128000372 -31599411 + (TG)n Simple_repeat Simple_repeat 1 40 0 1 1561 231 61 0 0 chr3 128000463 128000496 -31599287 + (CAGAGA)n Simple_repeat Simple_repeat 2 34 0 2 1561 348 24 0 0 chr3 128002117 128002158 -31597625 + (TCC)n Simple_repeat Simple_repeat 1 41 0 3 1561 1921 68 4 0 chr3 128002567 128002815 -31596968 - L1_Mus1 LINE L1 0 6567 6319 4 1561 2240 61 0 7 chr3 128002816 128003113 -31596670 + L1_Mus1 LINE L1 6038 6332 -235 4 1561 751 301 64 43 chr3 128003488 128003769 -31596014 + B4A SINE B4 3 289 -3 5 1561 336 273 101 8 chr3 128003826 128003955 -31595828 + B1F SINE Alu 1 141 -8 6 1561 420 161 16 8 chr3 128004859 128004984 -31594799 + (CATA)n Simple_repeat Simple_repeat 3 128 0 7 1561 255 130 0 0 chr3 128005049 128005103 -31594680 + (TC)n Simple_repeat Simple_repeat 1 54 0 8 1561 342 0 0 0 chr3 128005103 128005141 -31594642 + (TG)n Simple_repeat Simple_repeat 2 39 0 9 1561 725 320 62 4 chr3 128005152 128005412 -31594371 - B4A SINE B4 -17 275 1 1 1561 756 226 0 14 chr3 128005646 128005794 -31593989 - B1_Mur2 SINE Alu -1 148 3 1 1561 830 213 15 94 chr3 128006329 128006531 -31593252 + B3A SINE B2 1 186 -9 1 1561 204 305 73 0 chr3 128006886 128006968 -31592815 + L2b LINE L2 3267 3354 -21 1 1561 654 201 72 0 chr3 128007693 128007832 -31591951 + B1_Mur2 SINE Alu 1 149 0 1 1561 333 0 0 0 chr3 128009742 128009779 -31590004 + (TTTTG)n Simple_repeat Simple_repeat 2 38 0 1 1561 283 330 22 0 chr3 128010464 128010555 -31589228 - ID_B1 SINE B4 -10 214 122 1 1561 700 119 78 23 chr3 128010806 128010935 -31588848 + B1_Mur4 SINE Alu 1 136 -14 1 1561 253 326 152 34 chr3 128011267 128011445 -31588338 - MLT1H2 LTR MaLR -8 481 283 1 1561 809 302 63 53 chr3 128012045 128012710 -31587073 - L1MA6 LINE L1 -362 5938 5267 1 1561 1007 294 75 33 chr3 128012727 128013464 -31586319 - L1MA6 LINE L1 -980 5163 4396 1 1561 716 187 137 0 chr3 128013473 128013714 -31586069 + Lx9 LINE L1 7325 7598 -46 2 1561 1263 100 0 0 chr3 128016052 128016341 -31583442 + (TG)n Simple_repeat Simple_repeat 1 289 0 2 1561 397 240 127 37 chr3 128016589 128016723 -31583060 + MER3 DNA MER1_type 63 208 -1 2 1561 429 20 0 0 chr3 128017058 128017108 -31582675 + (TA)n Simple_repeat Simple_repeat 2 51 0 2 1561 535 257 142 35 chr3 128017673 128017927 -31581856 + B4A SINE B4 2 282 -10 2 1561 183 139 0 0 chr3 128017993 128018029 -31581754 + (TC)n Simple_repeat Simple_repeat 1 36 0 2 1561 21 36 0 0 chr3 128018150 128018178 -31581605 + AT_rich Low_complexity Low_complexity 1 28 0 2 1561 546 57 0 0 chr3 128018680 128018750 -31581033 + (GAAA)n Simple_repeat Simple_repeat 4 73 0 2 1561 240 220 0 0 chr3 128018826 128018876 -31580907 + MIR SINE MIR 81 130 -132 2 1561 2397 268 88 54 chr3 128021530 128022624 -31577159 - Lx9 LINE L1 -15 7629 6499 2 1561 763 275 65 13 chr3 128022644 128022689 -31577094 + Lx9 LINE L1 5647 5691 -1953 3 1561 243 0 0 0 chr3 128022689 128022716 -31577067 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3 1561 763 275 65 13 chr3 128022716 128022976 -31576807 + Lx9 LINE L1 5692 5967 -1677 3 1561 22 56 0 0 chr3 128023592 128023628 -31576155 + AT_rich Low_complexity Low_complexity 1 36 0 3 1561 454 321 142 40 chr3 128023666 128024165 -31575618 - Lx8 LINE L1 0 7473 6924 3 1561 201 268 37 110 chr3 128024648 128024757 -31575026 - MIRb SINE MIR -11 257 157 3 1561 435 280 97 7 chr3 128027158 128027302 -31572481 + B3A SINE B2 1 157 -41 3 1561 245 371 0 0 chr3 128027541 128027611 -31572172 - ID4 SINE ID -10 73 4 3 1561 183 139 0 0 chr3 128027777 128027813 -31571970 + (CTAA)n Simple_repeat Simple_repeat 2 37 0 3 1561 277 266 8 34 chr3 128028305 128028422 -31571361 + (CATATA)n Simple_repeat Simple_repeat 4 117 0 3 1561 444 19 0 0 chr3 128029325 128029378 -31570405 + (CAGAGA)n Simple_repeat Simple_repeat 2 54 0 3 1561 768 81 34 7 chr3 128030342 128030491 -31569292 + (TCTA)n Simple_repeat Simple_repeat 1 153 0 4 1561 226 244 0 0 chr3 128033529 128033574 -31566209 + CT-rich Low_complexity Low_complexity 3 47 0 4 1561 211 365 103 0 chr3 128034652 128034759 -31565024 - MIRc SINE MIR -135 133 16 4 1561 769 258 55 10 chr3 128035533 128035733 -31564050 + B3 SINE B2 2 210 -6 4 1561 220 136 23 0 chr3 128035981 128036025 -31563758 + (TA)n Simple_repeat Simple_repeat 2 46 0 4 1561 220 314 104 9 chr3 128036796 128036902 -31562881 + MIR SINE MIR 111 226 -36 4 1561 423 318 49 71 chr3 128037115 128037485 -31562298 - MTEa LTR MaLR 0 379 6 4 1561 432 0 0 0 chr3 128037742 128037790 -31561993 + (TA)n Simple_repeat Simple_repeat 2 49 0 4 1561 372 233 133 19 chr3 128038749 128038854 -31560929 + PB1D10 SINE Alu 1 117 0 4 1561 186 103 0 0 chr3 128039816 128039845 -31559938 + (TG)n Simple_repeat Simple_repeat 2 30 0 4 1561 661 164 13 18 chr3 128040550 128040775 -31559008 + (TG)n Simple_repeat Simple_repeat 1 224 0 5 1561 203 211 19 0 chr3 128040835 128040887 -31558896 + T-rich Low_complexity Low_complexity 3 55 0 5 1561 308 227 78 26 chr3 128042437 128042514 -31557269 - B4A SINE B4 -14 278 198 5 1561 333 123 0 0 chr3 128042539 128042604 -31557179 + (TCTCTG)n Simple_repeat Simple_repeat 2 66 0 5 1561 522 0 0 0 chr3 128042606 128042664 -31557119 + (CA)n Simple_repeat Simple_repeat 2 59 0 5 1561 302 363 77 12 chr3 128042666 128042836 -31556947 - B4A SINE B4 -111 181 1 5 1561 719 11 11 0 chr3 128044200 128044288 -31555495 + (TG)n Simple_repeat Simple_repeat 2 90 0 5 1561 623 252 0 37 chr3 128044314 128044450 -31555333 - B3A SINE B2 -66 132 2 5 1561 228 307 66 47 chr3 128049181 128049287 -31550496 - ORSL DNA Tip100 -139 136 29 5 1561 477 0 0 0 chr3 128050194 128050247 -31549536 + (CA)n Simple_repeat Simple_repeat 1 53 0 5 1561 901 164 153 5 chr3 128050270 128050466 -31549317 + URR1B DNA MER1_type 1 225 0 6 1561 2114 43 64 0 chr3 128052287 128052567 -31547216 + L1Md_F3 LINE L1 6287 6584 0 6 1561 1861 155 53 8 chr3 128052577 128052954 -31546829 - Lx4A LINE L1 -608 6450 6057 6 1561 2681 153 111 43 chr3 128052946 128053521 -31546262 + Lx4A LINE L1 6443 7056 -2 6 1561 537 213 82 108 chr3 128054641 128054836 -31544947 + B3A SINE B2 1 190 -8 6 1561 235 151 37 19 chr3 128054913 128054967 -31544816 + (TA)n Simple_repeat Simple_repeat 2 56 0 6 1561 449 100 11 32 chr3 128056666 128056759 -31543024 + (TA)n Simple_repeat Simple_repeat 1 91 0 6 1562 453 19 0 0 chr3 128057854 128057908 -31541875 + (CA)n Simple_repeat Simple_repeat 2 55 0 6 1562 236 313 0 43 chr3 128058149 128058219 -31541564 - L2b LINE L2 -203 3172 3106 6 1562 22 0 0 0 chr3 128059046 128059068 -31540715 + AT_rich Low_complexity Low_complexity 1 22 0 6 1562 287 314 216 11 chr3 128059160 128059350 -31540433 - B4A SINE B4 -10 282 54 6 1562 207 213 0 21 chr3 128059451 128059499 -31540284 + T-rich Low_complexity Low_complexity 4 50 0 7 1562 307 125 31 0 chr3 128059845 128059909 -31539874 + L1Md_F3 LINE L1 6505 6570 -14 7 1562 264 76 29 57 chr3 128062042 128062112 -31537671 + (TCTCTG)n Simple_repeat Simple_repeat 3 70 0 7 1562 335 260 0 0 chr3 128062112 128062189 -31537594 - B4A SINE B4 0 292 216 7 1562 7651 63 8 2 chr3 128062195 128063818 -31535965 - L1_Mus1 LINE L1 -2 6565 4936 7 1562 808 335 9 9 chr3 128063821 128064050 -31535733 - B4A SINE B4 -60 232 4 7 1562 339 208 0 0 chr3 128064188 128064265 -31535518 - L1MA6 LINE L1 0 6300 6224 7 1562 25 0 0 0 chr3 128064329 128064354 -31535429 + AT_rich Low_complexity Low_complexity 1 25 0 7 1562 188 277 69 69 chr3 128064878 128064979 -31534804 - MIR SINE MIR -66 142 42 7 1562 366 307 22 6 chr3 128066293 128066477 -31533306 + L1MC1 LINE L1 5789 5979 -365 7 1562 681 175 0 0 chr3 128067519 128067685 -31532098 + (TGGA)n Simple_repeat Simple_repeat 3 168 0 7 1562 297 204 73 129 chr3 128068325 128068449 -31531334 + PB1D9 SINE Alu 2 118 -2 8 1562 740 111 8 0 chr3 128068449 128068566 -31531217 + (GGA)n Simple_repeat Simple_repeat 1 118 0 8 1562 309 26 0 0 chr3 128068563 128068601 -31531182 + (GA)n Simple_repeat Simple_repeat 1 38 0 8 1562 524 305 153 7 chr3 128068712 128069012 -31530771 - MT2A LTR ERVL 0 533 190 8 1562 401 108 0 51 chr3 128069050 128069128 -31530655 - L1Md_F2 LINE L1 -12 6570 6497 8 1562 297 0 0 0 chr3 128069913 128069946 -31529837 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 8 1562 314 327 116 33 chr3 128070004 128070219 -31529564 + MLT1G3 LTR MaLR 268 500 -95 8 1562 468 0 0 0 chr3 128070235 128070287 -31529496 + (TG)n Simple_repeat Simple_repeat 1 52 0 8 1562 531 0 0 0 chr3 128070287 128070345 -31529438 + (GA)n Simple_repeat Simple_repeat 1 59 0 8 1562 505 351 17 98 chr3 128071744 128072031 -31527752 + B4A SINE B4 6 269 -23 8 1562 351 0 0 0 chr3 128072031 128072070 -31527713 + (CA)n Simple_repeat Simple_repeat 1 39 0 9 1562 357 75 0 0 chr3 128072088 128072141 -31527642 + (TC)n Simple_repeat Simple_repeat 2 54 0 9 1562 328 297 103 0 chr3 128072287 128072432 -31527351 - MER5A1 DNA MER1_type 0 166 7 9 1562 210 284 30 0 chr3 128072950 128073017 -31526766 + CT-rich Low_complexity Low_complexity 4 72 0 9 1562 576 282 6 6 chr3 128073339 128073503 -31526280 - RSINE1 SINE B4 0 165 2 9 1562 580 290 32 56 chr3 128075136 128075234 -31524549 + L1_Mur3 LINE L1 1205 1292 -4588 9 1562 207 0 0 0 chr3 128075234 128075257 -31524526 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 9 1562 580 291 33 56 chr3 128075257 128075654 -31524129 + L1_Mur3 LINE L1 1293 1674 -2240 9 1562 301 294 50 8 chr3 128075776 128075896 -31523887 - L1MC1 LINE L1 -20 6313 6189 9 1562 423 0 0 0 chr3 128076170 128076217 -31523566 + (CA)n Simple_repeat Simple_repeat 2 48 0 9 1562 769 136 24 12 chr3 128076869 128077033 -31522750 + CT-rich Low_complexity Low_complexity 3 168 0 9 1562 680 311 33 112 chr3 128077084 128077610 -31522173 - Lx8 LINE L1 -181 7292 6781 1 1562 1162 75 0 0 chr3 128077610 128077756 -31522027 + B1_Mus1 SINE Alu 3 148 0 1 1562 680 311 33 112 chr3 128077756 128077865 -31521918 - Lx8 LINE L1 -693 6780 6707 1 1562 22 35 0 0 chr3 128079047 128079076 -31520707 + AT_rich Low_complexity Low_complexity 1 29 0 1 1562 195 129 0 0 chr3 128079610 128079641 -31520142 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 1 1562 679 273 21 0 chr3 128081248 128081391 -31518392 - RSINE1 SINE B4 -7 158 13 1 1562 249 57 0 0 chr3 128081941 128081976 -31517807 + (T)n Simple_repeat Simple_repeat 1 35 0 1 1562 513 55 0 53 chr3 128083125 128083201 -31516582 + B1_Mus2 SINE Alu 76 147 0 1 1562 39 50 0 0 chr3 128083350 128083410 -31516373 + AT_rich Low_complexity Low_complexity 1 60 0 1 1562 400 229 131 7 chr3 128083410 128083555 -31516228 - Lx5 LINE L1 0 7050 6888 1 1562 1699 139 109 33 chr3 128084352 128084656 -31515127 + ORR1A2 LTR MaLR 1 327 0 1 1562 2594 179 110 10 chr3 128084894 128085518 -31514265 - Lx5 LINE L1 -707 6343 5657 1 1562 3133 218 58 7 chr3 128085520 128086208 -31513575 + Lx5 LINE L1 6323 7045 -5 1 1562 258 229 260 0 chr3 128086594 128086690 -31513093 + MLT1A0 LTR MaLR 8 128 -237 1 1562 489 128 35 0 chr3 128086874 128086960 -31512823 + ORR1A3 LTR MaLR 1 89 -237 1 1562 6149 118 53 1 chr3 128086980 128088214 -31511569 + Lx2 LINE L1 5346 6643 -354 1 1562 1417 116 5 0 chr3 128088214 128088430 -31511353 + Lx2 LINE L1 6775 6991 -6 1 1562 1493 94 44 18 chr3 128088477 128088704 -31511079 + ORR1A3 LTR MaLR 94 326 0 1 1562 495 298 4 73 chr3 128088755 128088987 -31510796 + Lx9 LINE L1 6936 7151 -493 1 1562 441 0 0 0 chr3 128089042 128089091 -31510692 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 1562 191 0 0 94 chr3 128089251 128089283 -31510500 + (TTTTA)n Simple_repeat Simple_repeat 3 31 0 1 1562 4034 174 34 19 chr3 128089284 128090128 -31509655 - Lx2B LINE L1 -27 6973 6117 1 1562 216 0 0 0 chr3 128091713 128091737 -31508046 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 1 1562 5296 119 21 1 chr3 128091754 128092559 -31507224 - Lx3A LINE L1 -9 6972 6152 1 1562 2454 103 2 25 chr3 128092559 128092967 -31506816 + Lx3B LINE L1 5747 6145 -828 1 1562 531 0 0 0 chr3 128092967 128093026 -31506757 + (CTTA)n Simple_repeat Simple_repeat 3 61 0 1 1562 215 42 19 77 chr3 128093353 128093405 -31506378 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 1 1562 324 0 0 0 chr3 128093713 128093749 -31506034 + (TG)n Simple_repeat Simple_repeat 2 37 0 1 1562 441 0 0 0 chr3 128093784 128093833 -31505950 + (TAG)n Simple_repeat Simple_repeat 1 49 0 1 1562 441 0 0 0 chr3 128093833 128093882 -31505901 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 1562 378 0 0 0 chr3 128094089 128094131 -31505652 + (CA)n Simple_repeat Simple_repeat 2 43 0 1 1562 225 388 48 40 chr3 128094326 128094452 -31505331 - RMER13A LTR ERVK -37 823 697 1 1562 227 295 0 0 chr3 128095064 128095142 -31504641 + L1M5 LINE L1 2456 2533 -3613 1 1562 414 0 0 0 chr3 128095225 128095271 -31504512 + (CACAT)n Simple_repeat Simple_repeat 5 50 0 1 1562 981 306 76 22 chr3 128095304 128095979 -31503804 - L1MA5 LINE L1 -398 5902 5184 1 1562 2312 192 135 10 chr3 128095981 128096471 -31503312 - RMER15 LTR ERVL -22 553 3 1 1562 343 311 66 27 chr3 128096484 128096742 -31503041 - L1MA5 LINE L1 -2481 3659 3392 1 1562 859 175 126 20 chr3 128096742 128096940 -31502843 + MTD LTR MaLR 79 297 -122 1 1562 645 14 0 0 chr3 128097076 128097150 -31502633 + (TC)n Simple_repeat Simple_repeat 1 74 0 1 1562 288 297 95 56 chr3 128097157 128097514 -31502269 - L1MA5 LINE L1 -2931 3212 2842 1 1562 320 303 114 0 chr3 128097602 128097734 -31502049 - L1MA5 LINE L1 -3422 2721 2575 1 1562 1161 244 123 16 chr3 128097744 128098119 -31501664 + MTD LTR MaLR 5 419 0 1 1562 575 284 87 26 chr3 128098579 128098843 -31500940 + B4A SINE B4 3 282 -10 1 1562 273 310 79 22 chr3 128099041 128099130 -31500653 + B3 SINE B2 1 94 -122 1 1562 227 355 57 11 chr3 128099557 128099822 -31499961 + L1ME2z LINE L1 5362 5638 -806 1 1562 246 299 161 37 chr3 128099889 128100188 -31499595 + L1ME2z LINE L1 5757 6092 -352 1 1562 327 49 0 0 chr3 128100531 128100572 -31499211 + (TC)n Simple_repeat Simple_repeat 2 42 0 1 1562 25 0 0 0 chr3 128100577 128100602 -31499181 + AT_rich Low_complexity Low_complexity 1 25 0 1 1562 3724 83 6 4 chr3 128100606 128101115 -31498668 - L1_Mus3 LINE L1 -7 6631 6122 1 1562 825 314 97 31 chr3 128103191 128103310 -31496473 - L1MA5 LINE L1 -291 6009 5880 1 1562 2836 79 7 64 chr3 128103310 128103730 -31496053 - MTA_Mm LTR MaLR 0 396 1 1 1562 825 314 97 31 chr3 128103730 128103978 -31495805 - L1MA5 LINE L1 -421 5879 5608 1 1562 1660 33 74 0 chr3 128103978 128104193 -31495590 - L1Md_F2 LINE L1 0 6582 6352 1 1562 825 314 97 31 chr3 128104193 128104409 -31495374 - L1MA5 LINE L1 -693 5607 5386 1 1562 943 272 96 21 chr3 128104994 128105380 -31494403 - Lx8 LINE L1 -61 7412 6998 1 1562 272 220 150 0 chr3 128106169 128106269 -31493514 - Lx4B LINE L1 0 7058 6944 1 1562 555 15 0 0 chr3 128107874 128107921 -31491862 + (TG)n Simple_repeat Simple_repeat 1 47 0 1 1562 792 122 0 0 chr3 128107921 128108044 -31491739 + (TA)n Simple_repeat Simple_repeat 2 124 0 1 1562 555 15 0 0 chr3 128108044 128108062 -31491721 + (TG)n Simple_repeat Simple_repeat 1 18 0 1 1562 1017 249 78 127 chr3 128109030 128109285 -31490498 - ORR1D2 LTR MaLR -2 368 110 1 1562 2689 84 5 21 chr3 128109285 128109663 -31490120 - L1_Mus3 LINE L1 -1 6637 6266 1 1562 1017 249 78 127 chr3 128109663 128109794 -31489989 - ORR1D2 LTR MaLR -261 109 1 1 1562 182 182 70 35 chr3 128109885 128109942 -31489841 - L2 LINE L2 -1878 1541 1483 1 1562 1202 284 58 14 chr3 128109970 128110316 -31489467 - MTEa LTR MaLR -18 361 1 1 1562 216 178 222 0 chr3 128111372 128111417 -31488366 + B3 SINE B2 3 57 -159 1 1562 648 259 37 6 chr3 128111956 128112119 -31487664 + B3 SINE B2 49 216 0 1 1562 1436 211 80 11 chr3 128113096 128113446 -31486337 - ORR1D1 LTR MaLR 0 374 1 1 1562 843 251 46 5 chr3 128113988 128114204 -31485579 - ORR1D2 LTR MaLR 0 370 146 1 1562 219 167 76 38 chr3 128114353 128114484 -31485299 + (TA)n Simple_repeat Simple_repeat 2 137 0 1 1562 199 322 139 8 chr3 128114485 128114607 -31485176 - MIRb SINE MIR -30 238 101 1 1562 454 261 45 23 chr3 128115527 128115660 -31484123 - MER121 Unknown Unknown -212 200 65 1 1562 25 0 0 0 chr3 128115788 128115813 -31483970 + AT_rich Low_complexity Low_complexity 1 25 0 1 1562 209 260 0 13 chr3 128117099 128117177 -31482606 + (TA)n Simple_repeat Simple_repeat 1 77 0 1 1562 380 71 18 0 chr3 128118936 128118992 -31480791 + (TG)n Simple_repeat Simple_repeat 1 57 0 1 1562 180 111 0 0 chr3 128119293 128119320 -31480463 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 1 1562 294 293 79 62 chr3 128120260 128120438 -31479345 + MER20 DNA MER1_type 34 214 -5 1 1562 2198 91 19 0 chr3 128120537 128120857 -31478926 - IAPEY2_LTR LTR ERVK 0 357 32 1 1562 881 268 41 39 chr3 128120869 128121223 -31478560 - MTE2b LTR MaLR -21 358 1 1 1562 246 191 0 0 chr3 128122289 128122336 -31477447 - B1F1 SINE Alu -8 141 95 1 1562 247 278 0 0 chr3 128122344 128122416 -31477367 + A-rich Low_complexity Low_complexity 3 74 0 1 1562 32 26 0 0 chr3 128122864 128122903 -31476880 + AT_rich Low_complexity Low_complexity 1 39 0 1 1562 1300 237 36 86 chr3 128122969 128123462 -31476321 + RMER19C LTR ERVK 1 460 -277 1 1562 1843 208 87 55 chr3 128124165 128124783 -31475000 - RMER6C LTR ERVK -14 676 1 1 1562 257 267 43 64 chr3 128126461 128126601 -31473182 + L1MA6 LINE L1 5947 6083 -217 1 1562 731 254 141 32 chr3 128126602 128126832 -31472951 + ORR1D2 LTR MaLR 41 283 -87 1 1562 369 0 0 0 chr3 128126832 128126873 -31472910 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 1562 731 229 162 18 chr3 128126873 128126943 -31472840 + ORR1D2 LTR MaLR 284 369 -1 1 1562 773 238 86 45 chr3 128127403 128127623 -31472160 + ORR1D1 LTR MaLR 1 229 -145 1 1562 3234 62 12 0 chr3 128127649 128128072 -31471711 - L1_Mus3 LINE L1 -560 6078 5651 1 1562 4024 77 11 0 chr3 128128072 128128606 -31471177 + L1_Mus3 LINE L1 6086 6625 -13 1 1562 505 180 32 5 chr3 128128642 128128761 -31471022 + ORR1D1 LTR MaLR 271 419 0 1 1562 730 281 83 50 chr3 128128855 128129132 -31470651 - B4 SINE B4 -6 286 1 1 1562 25 0 0 0 chr3 128129648 128129673 -31470110 + AT_rich Low_complexity Low_complexity 1 25 0 1 1562 867 311 39 32 chr3 128129937 128130219 -31469564 + B4A SINE B4 3 286 -6 1 1562 801 138 5 0 chr3 128130272 128130490 -31469293 + (TC)n Simple_repeat Simple_repeat 1 219 0 1 1562 234 0 0 0 chr3 128130491 128130517 -31469266 + (CA)n Simple_repeat Simple_repeat 1 26 0 1 1562 192 97 0 0 chr3 128132079 128132110 -31467673 + (CAAAAA)n Simple_repeat Simple_repeat 2 32 0 1 1562 21 0 0 0 chr3 128133170 128133191 -31466592 + AT_rich Low_complexity Low_complexity 1 21 0 1 1562 22 88 0 0 chr3 128133534 128133591 -31466192 + AT_rich Low_complexity Low_complexity 1 57 0 1 1562 258 32 0 0 chr3 128133619 128133650 -31466133 + (CAAA)n Simple_repeat Simple_repeat 3 33 0 1 1562 587 60 0 24 chr3 128133656 128133741 -31466042 + Lx3_Mus LINE L1 6607 6689 -320 1 1562 283 339 85 60 chr3 128134017 128134152 -31465631 - L3 LINE CR1 -460 4029 3881 1 1562 413 36 18 0 chr3 128134152 128134207 -31465576 + (TTA)n Simple_repeat Simple_repeat 2 57 0 1 1562 283 339 85 60 chr3 128134207 128134306 -31465477 - L3 LINE CR1 -609 3880 3790 1 1562 405 0 0 0 chr3 128134995 128135040 -31464743 + (A)n Simple_repeat Simple_repeat 1 45 0 1 1562 42 0 0 0 chr3 128135480 128135522 -31464261 + AT_rich Low_complexity Low_complexity 1 42 0 1 1562 3940 105 15 10 chr3 128135524 128136110 -31463673 - Lx2 LINE L1 0 6997 6409 1 1562 307 162 13 26 chr3 128136638 128136714 -31463069 + GA-rich Low_complexity Low_complexity 2 76 0 1 1562 311 297 42 8 chr3 128136995 128137115 -31462668 - MLT1A1 LTR MaLR -5 403 244 1 1562 226 402 27 0 chr3 128137287 128137399 -31462384 + PB1D10 SINE Alu 2 116 -1 1 1562 388 178 31 94 chr3 128137496 128137688 -31462095 + (TATAG)n Simple_repeat Simple_repeat 1 180 0 1 1562 207 0 0 0 chr3 128137965 128137988 -31461795 + (CA)n Simple_repeat Simple_repeat 2 24 0 1 1562 696 296 24 112 chr3 128138091 128138422 -31461361 - Lx8 LINE L1 -776 6697 6396 1 1562 4098 99 14 25 chr3 128138964 128139596 -31460187 - L1_Mus3 LINE L1 0 6638 6014 1 1562 7270 106 3 2 chr3 128139596 128140667 -31459116 + L1_Mm LINE L1 2011 3082 -2801 1 1562 24 32 0 0 chr3 128140722 128140753 -31459030 + AT_rich Low_complexity Low_complexity 1 31 0 1 1562 229 139 0 0 chr3 128140944 128140980 -31458803 + MTC LTR MaLR 20 55 -366 1 1562 1062 292 88 20 chr3 128142217 128142883 -31456900 - L1M2 LINE L1 -758 5554 4826 2 1562 801 49 0 0 chr3 128142883 128142985 -31456798 + (TCTA)n Simple_repeat Simple_repeat 4 105 0 2 1562 1062 289 91 21 chr3 128142985 128143039 -31456744 - L1M2 LINE L1 -1318 4825 4778 2 1562 38162 41 0 3 chr3 128143063 128149397 -31450386 - L1Md_T LINE L1 0 6585 171 2 1562 24 0 0 0 chr3 128149420 128149444 -31450339 + AT_rich Low_complexity Low_complexity 1 24 0 2 1562 405 0 0 0 chr3 128149551 128149596 -31450187 + (TC)n Simple_repeat Simple_repeat 2 46 0 2 1562 324 0 0 0 chr3 128149596 128149631 -31450152 + (TG)n Simple_repeat Simple_repeat 1 36 0 2 1562 302 360 59 0 chr3 128149634 128149770 -31450013 - RSINE1 SINE B4 -18 147 4 2 1562 1236 296 102 22 chr3 128149773 128150786 -31448997 - L1M2 LINE L1 -1488 4655 3281 2 1562 209 176 0 0 chr3 128150789 128150823 -31448960 + CT-rich Low_complexity Low_complexity 1 34 0 2 1562 941 259 5 5 chr3 128151090 128151284 -31448499 - B3 SINE B2 -5 211 18 2 1562 1848 258 105 12 chr3 128151293 128152026 -31447757 - L1M2 LINE L1 -3081 3062 2262 2 1562 303 146 0 0 chr3 128154689 128154744 -31445039 + (TG)n Simple_repeat Simple_repeat 2 56 0 2 1562 207 0 0 0 chr3 128157572 128157595 -31442188 + (TCTCTG)n Simple_repeat Simple_repeat 2 24 0 2 1562 310 268 99 61 chr3 128157919 128158050 -31441733 + MLT1C LTR MaLR 325 460 -7 2 1562 342 0 0 0 chr3 128158338 128158376 -31441407 + (TAA)n Simple_repeat Simple_repeat 2 39 0 2 1562 267 122 0 0 chr3 128159552 128159601 -31440182 + (TTTTG)n Simple_repeat Simple_repeat 2 50 0 2 1562 512 269 52 43 chr3 128160498 128160708 -31439075 + B3 SINE B2 4 215 -1 2 1562 207 0 0 0 chr3 128161002 128161025 -31438758 + (A)n Simple_repeat Simple_repeat 1 23 0 2 1562 1663 39 0 0 chr3 128161849 128162057 -31437726 + L1Md_F2 LINE L1 6363 6570 -12 2 1562 23 0 0 0 chr3 128162139 128162162 -31437621 + AT_rich Low_complexity Low_complexity 1 23 0 2 1562 268 305 67 48 chr3 128162255 128162465 -31437318 - MIR SINE MIR -44 224 11 2 1562 22 35 0 0 chr3 128162961 128162990 -31436793 + AT_rich Low_complexity Low_complexity 1 29 0 2 1562 321 264 13 53 chr3 128163519 128163595 -31436188 - RSINE1 SINE B4 0 165 93 2 1562 186 43 0 0 chr3 128163595 128163618 -31436165 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2 1562 3001 42 0 0 chr3 128163623 128163981 -31435802 - L1_Mus1 LINE L1 0 6567 6210 2 1562 1998 45 12 0 chr3 128163981 128164226 -31435557 + L1_Mus1 LINE L1 5939 6186 -381 2 1562 354 267 58 0 chr3 128164226 128164312 -31435471 - RSINE1 SINE B4 -58 107 17 2 1562 428 350 63 78 chr3 128165320 128165652 -31434131 + ORR1E LTR MaLR 1 327 -32 2 1562 180 111 0 0 chr3 128165968 128165995 -31433788 + (TCTA)n Simple_repeat Simple_repeat 4 30 0 2 1562 6062 108 16 14 chr3 128166000 128166942 -31432841 - Lx3A LINE L1 -11 6970 6027 2 1562 243 0 0 0 chr3 128167790 128167817 -31431966 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2 1562 5012 74 1 1 chr3 128168234 128168909 -31430874 - L1_Mm LINE L1 -1482 4401 3727 2 1562 5766 46 19 23 chr3 128168922 128169673 -31430110 + L1_Mus1 LINE L1 5587 6334 -233 2 1562 2075 0 0 0 chr3 128169671 128169898 -31429885 + L1_Mm LINE L1 5360 5586 -297 2 1562 8970 6 0 0 chr3 128169898 128170894 -31428889 + L1Md_A LINE L1 5587 6582 0 2 1562 1800 346 45 35 chr3 128171062 128172073 -31427710 + Lx8 LINE L1 6453 7473 0 2 1562 22 0 0 0 chr3 128172331 128172353 -31427430 + AT_rich Low_complexity Low_complexity 1 22 0 2 1562 1482 262 43 15 chr3 128173134 128173533 -31426250 + MTD LTR MaLR 8 417 -2 2 1562 309 26 0 0 chr3 128173663 128173701 -31426082 + (CAA)n Simple_repeat Simple_repeat 2 39 0 2 1562 261 0 0 0 chr3 128174979 128175008 -31424775 + (TG)n Simple_repeat Simple_repeat 1 29 0 2 1562 423 0 0 0 chr3 128175008 128175054 -31424729 + (GA)n Simple_repeat Simple_repeat 1 47 0 2 1562 1241 250 56 24 chr3 128175543 128175756 -31424027 - Lx7 LINE L1 -317 7379 7153 2 1562 306 0 0 0 chr3 128175756 128175790 -31423993 + (TG)n Simple_repeat Simple_repeat 2 35 0 2 1562 1241 250 56 24 chr3 128175790 128175953 -31423830 - Lx7 LINE L1 -544 7152 6992 2 1562 626 254 97 22 chr3 128176777 128176962 -31422821 + B3 SINE B2 3 201 -15 2 1562 419 168 11 0 chr3 128176976 128177071 -31422712 + (CA)n Simple_repeat Simple_repeat 2 97 0 2 1562 7203 154 31 7 chr3 128177256 128178670 -31421113 + Lx3C LINE L1 5482 7050 -8 2 1562 459 0 0 0 chr3 128178697 128178748 -31421035 + (GA)n Simple_repeat Simple_repeat 2 52 0 2 1562 531 0 0 0 chr3 128179586 128179645 -31420138 + (CA)n Simple_repeat Simple_repeat 2 60 0 2 1562 687 12 0 0 chr3 128179646 128179726 -31420057 + (GA)n Simple_repeat Simple_repeat 1 80 0 2 1562 554 253 55 6 chr3 128179972 128180135 -31419648 - B3 SINE B2 0 216 46 2 1562 455 305 13 7 chr3 128180136 128180291 -31419492 + Lx7 LINE L1 7153 7308 -388 2 1562 183 378 44 11 chr3 128181514 128181605 -31418178 + MIRm SINE MIR 171 264 -12 2 1562 458 357 81 44 chr3 128181680 128181976 -31417807 - LTR41 LTR ERVL -26 742 436 2 1562 200 286 18 0 chr3 128182103 128182159 -31417624 + GA-rich Low_complexity Low_complexity 2 58 0 2 1562 405 339 27 49 chr3 128182183 128182366 -31417417 - LTR41 LTR ERVL -587 181 3 2 1562 516 360 77 16 chr3 128182742 128183053 -31416730 + MLT1E LTR MaLR 7 336 -317 2 1562 556 313 39 9 chr3 128183065 128183294 -31416489 + MLT1E LTR MaLR 399 634 -19 2 1562 2015 145 55 24 chr3 128183485 128183867 -31415916 + ORR1B1 LTR MaLR 1 394 0 2 1562 208 50 48 48 chr3 128184106 128184148 -31415635 + (TTAA)n Simple_repeat Simple_repeat 3 44 0 2 1562 3713 218 67 7 chr3 128184148 128184967 -31414816 - Lx5 LINE L1 -8 7042 6175 2 1562 3117 141 21 0 chr3 128184970 128185488 -31414295 - L1_Mur2 LINE L1 -339 5538 5010 2 1562 4302 132 99 71 chr3 128185467 128185600 -31414183 + L1_Mur2 LINE L1 4049 4202 -1675 2 1562 636 14 0 0 chr3 128185600 128185673 -31414110 + (TA)n Simple_repeat Simple_repeat 2 74 0 2 1562 198 0 0 0 chr3 128185673 128185694 -31414089 + (TG)n Simple_repeat Simple_repeat 1 22 0 2 1562 4302 132 99 71 chr3 128185694 128185884 -31413899 + L1_Mur2 LINE L1 4203 4354 -1523 2 1562 847 68 0 0 chr3 128185884 128186001 -31413782 - L1_Mus2 LINE L1 -2 6564 6448 2 1562 4302 132 99 71 chr3 128186001 128186595 -31413188 + L1_Mur2 LINE L1 4355 4993 -884 2 1562 199 300 25 91 chr3 128187154 128187275 -31412508 + L3 LINE CR1 3542 3654 -835 2 195 5854 132 76 16 chr3 128187610 128188642 -31411141 - Lx3C LINE L1 0 6976 5884 2 1563 7328 117 12 9 chr3 128188642 128189783 -31410000 + Lx8 LINE L1 4794 5931 -1542 2 1563 356 306 94 77 chr3 128189811 128189981 -31409802 - B3A SINE B2 -18 180 8 2 1563 180 0 0 0 chr3 128190630 128190650 -31409133 + (TTATA)n Simple_repeat Simple_repeat 3 22 0 2 1563 8645 49 0 0 chr3 128191117 128192177 -31407606 + L1_Mm LINE L1 4589 5648 -235 2 1563 346 346 28 9 chr3 128192532 128192640 -31407143 - PB1D10 SINE Alu 0 117 8 2 1563 2469 112 11 3 chr3 128192780 128193155 -31406628 + L1_Mus4 LINE L1 6253 6630 -6 2 1563 628 293 49 0 chr3 128193218 128193423 -31406360 - B3 SINE B2 0 216 2 2 1563 365 58 0 19 chr3 128193978 128194031 -31405752 + (CAAAC)n Simple_repeat Simple_repeat 2 53 0 2 1563 522 0 0 0 chr3 128194099 128194157 -31405626 + (TCC)n Simple_repeat Simple_repeat 1 58 0 2 1563 21 58 0 19 chr3 128194683 128194710 -31405073 + AT_rich Low_complexity Low_complexity 1 27 0 2 1563 234 0 0 0 chr3 128194710 128194736 -31405047 + (TATAA)n Simple_repeat Simple_repeat 4 29 0 2 1563 21 58 0 19 chr3 128194736 128194761 -31405022 + AT_rich Low_complexity Low_complexity 1 25 0 2 1563 434 18 18 0 chr3 128195463 128195518 -31404265 + (TA)n Simple_repeat Simple_repeat 2 57 0 2 1563 1415 210 72 18 chr3 128196155 128196489 -31403294 - ORR1D1 LTR MaLR -10 364 13 2 1563 1407 204 47 0 chr3 128196858 128197202 -31402581 - Lx9 LINE L1 -8 7636 7277 2 1563 345 206 161 11 chr3 128197334 128197427 -31402356 - Lx4A LINE L1 -109 6899 6793 2 1563 6339 150 35 26 chr3 128197413 128199485 -31400298 - Lx4A LINE L1 -446 6612 4419 2 1563 1654 157 112 5 chr3 128199482 128199855 -31399928 + Lx4A LINE L1 6646 7058 0 2 1563 796 116 29 0 chr3 128199994 128200132 -31399651 + (TTTC)n Simple_repeat Simple_repeat 3 144 0 2 1563 280 167 0 0 chr3 128200132 128200174 -31399609 + polypyrimidine Low_complexity Low_complexity 3 44 0 2 1563 446 317 38 27 chr3 128200175 128200360 -31399423 + RMER30 DNA MER1_type 15 201 -1 2 1563 306 0 0 0 chr3 128202707 128202741 -31397042 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 2 1563 853 283 76 76 chr3 128204298 128204562 -31395221 + B4 SINE B4 2 274 -18 2 1563 536 0 16 0 chr3 128204562 128204626 -31395157 + (TAGA)n Simple_repeat Simple_repeat 4 68 0 2 1563 853 283 76 76 chr3 128204626 128204652 -31395131 + B4 SINE B4 275 292 0 2 1563 397 207 0 26 chr3 128204652 128204766 -31395017 + (TATATG)n Simple_repeat Simple_repeat 4 114 0 2 1563 242 287 11 11 chr3 128204778 128204866 -31394917 + (CATATA)n Simple_repeat Simple_repeat 1 88 0 2 1563 232 365 46 97 chr3 128204910 128205147 -31394636 + LTR78 LTR ERV1 735 959 -345 2 1563 314 284 25 0 chr3 128205408 128205489 -31394294 + ID2 SINE ID 1 83 0 2 1563 21 36 0 0 chr3 128205492 128205520 -31394263 + AT_rich Low_complexity Low_complexity 1 28 0 2 1563 2658 98 8 0 chr3 128205726 128206104 -31393679 - L1_Mm LINE L1 -1067 4816 4436 2 1563 5132 69 6 1 chr3 128206104 128206770 -31393013 + L1_Mus2 LINE L1 5898 6566 0 2 1563 26 30 0 0 chr3 128206804 128206837 -31392946 + AT_rich Low_complexity Low_complexity 1 33 0 2 1563 1692 195 2 68 chr3 128207242 128207671 -31392112 - RMER17C LTR ERVK -9 401 1 2 1563 474 313 81 33 chr3 128207808 128208201 -31391582 - L1MC1 LINE L1 -367 5966 5555 2 1563 21 0 0 0 chr3 128208698 128208719 -31391064 + AT_rich Low_complexity Low_complexity 1 21 0 2 1563 23 54 0 0 chr3 128209295 128209332 -31390451 + AT_rich Low_complexity Low_complexity 1 37 0 2 1563 215 156 22 0 chr3 128210739 128210784 -31388999 + A-rich Low_complexity Low_complexity 1 46 0 2 1563 3271 35 117 2 chr3 128210918 128211344 -31388439 + IAPLTR2_Mm LTR ERVK 1 475 0 2 1563 622 292 10 35 chr3 128211446 128211645 -31388138 - B3 SINE B2 0 216 23 2 1563 246 361 0 0 chr3 128212359 128212478 -31387305 + L1M1 LINE L1 5799 5917 -386 2 1563 218 222 0 40 chr3 128212529 128212604 -31387179 + (CA)n Simple_repeat Simple_repeat 1 72 0 2 1563 294 29 0 0 chr3 128213066 128213101 -31386682 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 3 1563 796 196 155 0 chr3 128213214 128213408 -31386375 + URR1A DNA MER1_type 1 224 -2 3 1563 352 297 113 42 chr3 128213408 128213463 -31386320 - CYRA11_Mm Unknown Y-chromosome -425 192 121 3 1563 279 270 95 0 chr3 128213429 128213555 -31386228 + MER33 DNA MER1_type 78 215 -109 3 1563 260 278 0 40 chr3 128214021 128214122 -31385661 + Lx4B LINE L1 6958 7054 -4 3 1563 459 0 0 0 chr3 128214135 128214186 -31385597 + (TAGA)n Simple_repeat Simple_repeat 1 51 0 3 1563 1188 152 0 5 chr3 128214257 128214468 -31385315 - Lx LINE L1 -2 6652 6443 3 1563 225 128 0 0 chr3 128216097 128216144 -31383639 + (TCTG)n Simple_repeat Simple_repeat 4 50 0 3 1563 351 0 0 0 chr3 128216144 128216183 -31383600 + (GA)n Simple_repeat Simple_repeat 1 39 0 3 1563 745 181 175 5 chr3 128216611 128216800 -31382983 + Lx3C LINE L1 6741 6961 -15 3 1563 261 0 0 0 chr3 128216800 128216829 -31382954 + (TTAA)n Simple_repeat Simple_repeat 3 31 0 3 1563 37 62 0 0 chr3 128216968 128217033 -31382750 + AT_rich Low_complexity Low_complexity 1 65 0 3 1563 288 244 35 0 chr3 128217038 128217124 -31382659 + (TA)n Simple_repeat Simple_repeat 1 89 0 3 1563 4893 182 39 19 chr3 128217513 128218493 -31381290 - Lx4B LINE L1 -6 7052 6054 3 1563 392 160 120 0 chr3 128218493 128218568 -31381215 + Lx4B LINE L1 4865 4948 -929 3 1563 4446 132 27 3 chr3 128218566 128219477 -31380306 + Lx4B LINE L1 5102 6046 -1012 3 1563 1613 35 0 0 chr3 128220224 128220422 -31379361 - L1Md_F3 LINE L1 -3 6581 6384 3 1563 2950 18 0 0 chr3 128220422 128220755 -31379028 + L1Md_F3 LINE L1 6052 6384 -200 3 1563 2232 70 12 28 chr3 128221068 128221390 -31378393 + Lx3_Mus LINE L1 6693 7009 0 3 1563 814 98 30 0 chr3 128221398 128221531 -31378252 + (GAAA)n Simple_repeat Simple_repeat 2 138 0 3 1563 195 129 0 0 chr3 128223270 128223301 -31376482 + (A)n Simple_repeat Simple_repeat 1 31 0 3 1563 441 0 0 0 chr3 128224238 128224287 -31375496 + (TG)n Simple_repeat Simple_repeat 2 50 0 3 1563 2636 71 29 18 chr3 128224644 128225030 -31374753 + L1_Mus4 LINE L1 6247 6636 0 3 1563 858 126 0 0 chr3 128225280 128225447 -31374336 + (CA)n Simple_repeat Simple_repeat 1 167 0 3 1563 1181 204 144 9 chr3 128225531 128225857 -31373926 + ORR1D1 LTR MaLR 1 370 -4 3 1563 474 65 0 0 chr3 128227109 128227171 -31372612 + (TG)n Simple_repeat Simple_repeat 1 62 0 3 1563 180 254 90 98 chr3 128230377 128230499 -31369284 + L4 LINE RTE 681 801 -1228 3 1563 22 35 0 0 chr3 128230925 128230954 -31368829 + AT_rich Low_complexity Low_complexity 1 29 0 3 1563 655 168 12 0 chr3 128231009 128231176 -31368607 + GA-rich Low_complexity Low_complexity 1 169 0 3 1563 863 284 21 29 chr3 128234974 128235253 -31364530 - Lx9 LINE L1 -736 6908 6632 3 1563 180 0 0 0 chr3 128235330 128235350 -31364433 + (A)n Simple_repeat Simple_repeat 1 20 0 3 1563 885 288 72 49 chr3 128235355 128235702 -31364081 + Lx9 LINE L1 7030 7384 -260 3 1563 414 0 0 0 chr3 128235717 128235763 -31364020 + (TG)n Simple_repeat Simple_repeat 2 47 0 3 1563 24 53 0 0 chr3 128235849 128235887 -31363896 + AT_rich Low_complexity Low_complexity 1 38 0 3 1563 957 64 0 0 chr3 128236334 128236459 -31363324 + (TA)n Simple_repeat Simple_repeat 2 126 0 3 1563 258 95 0 0 chr3 128237034 128237076 -31362707 + (TG)n Simple_repeat Simple_repeat 2 43 0 3 1563 22 0 0 0 chr3 128237228 128237250 -31362533 + AT_rich Low_complexity Low_complexity 1 22 0 3 1563 315 248 71 0 chr3 128237250 128237363 -31362420 - Lx9 LINE L1 -2 7642 7522 3 1563 1562 207 28 46 chr3 128237532 128238097 -31361686 - Lx9 LINE L1 -1554 6090 5508 3 1563 1591 259 61 30 chr3 128238108 128238680 -31361103 + L1_Rod LINE L1 4547 5136 -711 3 1563 1041 348 33 41 chr3 128239775 128240408 -31359375 + Lx8 LINE L1 6728 7355 -118 3 1563 24 0 0 0 chr3 128240757 128240781 -31359002 + AT_rich Low_complexity Low_complexity 1 24 0 3 1563 383 348 14 7 chr3 128241929 128242071 -31357712 - B1F SINE Alu -6 143 1 3 1563 4754 87 14 0 chr3 128242209 128242854 -31356929 + L1Md_F2 LINE L1 5917 6570 -12 3 1563 30 45 0 0 chr3 128243536 128243580 -31356203 + AT_rich Low_complexity Low_complexity 1 44 0 3 1563 1455 256 39 22 chr3 128245285 128245648 -31354135 + MTE2a LTR MaLR 9 377 -2 3 1563 205 321 35 12 chr3 128245819 128245904 -31353879 + MIR SINE MIR 150 236 -26 3 1563 2022 44 0 0 chr3 128246031 128246280 -31353503 - L1_Mm LINE L1 -1097 4786 4538 3 1563 5010 16 0 5 chr3 128246280 128246857 -31352926 + L1Md_T LINE L1 6009 6582 0 3 1563 885 28 0 0 chr3 128247314 128247422 -31352361 + (TC)n Simple_repeat Simple_repeat 2 109 0 3 1563 731 73 0 0 chr3 128247426 128247522 -31352261 - B1_Mus2 SINE Alu -5 142 47 3 1563 878 70 0 0 chr3 128247522 128247637 -31352146 - B1_Mus1 SINE Alu -33 115 1 3 1563 704 298 76 35 chr3 128248395 128248684 -31351099 - Lx8 LINE L1 -31 7442 7142 3 1563 551 268 13 29 chr3 128248700 128248907 -31350876 + Lx8 LINE L1 6935 7127 -569 3 1563 669 58 0 0 chr3 128249758 128249844 -31349939 + (TC)n Simple_repeat Simple_repeat 1 86 0 3 1563 405 0 0 0 chr3 128249845 128249890 -31349893 + (TG)n Simple_repeat Simple_repeat 2 46 0 3 1563 450 124 209 0 chr3 128250490 128250595 -31349188 + Lx3C LINE L1 6817 6943 -33 3 1563 926 198 12 6 chr3 128250595 128250763 -31349020 - URR1B DNA MER1_type -54 171 3 3 1563 854 74 16 0 chr3 128251021 128251143 -31348640 + (GAAA)n Simple_repeat Simple_repeat 3 126 0 3 1563 206 136 23 0 chr3 128251167 128251211 -31348572 + (TA)n Simple_repeat Simple_repeat 2 46 0 3 1563 1607 181 49 3 chr3 128251228 128251555 -31348228 + Lx3C LINE L1 6632 6973 -3 3 1563 276 53 0 0 chr3 128251635 128251673 -31348110 + (CA)n Simple_repeat Simple_repeat 2 39 0 3 1563 180 0 0 0 chr3 128252013 128252033 -31347750 + (TG)n Simple_repeat Simple_repeat 1 20 0 3 1563 3412 101 10 2 chr3 128252033 128252529 -31347254 + Lx3_Mus LINE L1 5873 6372 -637 3 1563 864 199 39 16 chr3 128252556 128252792 -31346991 + L1_Rod LINE L1 5434 5645 -202 3 1563 3418 37 2 0 chr3 128253536 128253944 -31345839 + L1Md_F2 LINE L1 5178 5586 -297 3 1563 8305 27 7 1 chr3 128253944 128254934 -31344849 + L1Md_F2 LINE L1 5587 6582 0 3 1563 286 333 208 0 chr3 128255143 128255287 -31344496 + MER58A DNA MER1_type 50 223 -1 3 1563 21 36 0 0 chr3 128255761 128255789 -31343994 + AT_rich Low_complexity Low_complexity 1 28 0 3 1563 333 292 213 51 chr3 128256217 128256513 -31343270 - MLT1A0 LTR MaLR -21 344 1 3 1563 352 291 61 81 chr3 128257115 128257313 -31342470 - B3A SINE B2 -4 194 1 3 1563 2995 74 8 2 chr3 128257398 128257792 -31341991 - MTA_Mm LTR MaLR 0 396 1 3 1563 285 75 0 0 chr3 128258441 128258481 -31341302 + (CAAA)n Simple_repeat Simple_repeat 1 40 0 3 1563 501 264 39 28 chr3 128258549 128258728 -31341055 - Lx9 LINE L1 -253 7391 7211 3 1563 452 265 92 7 chr3 128258768 128258920 -31340863 - Lx9 LINE L1 -402 7242 7078 3 1563 472 274 93 8 chr3 128259820 128259938 -31339845 + RSINE1 SINE B4 18 145 -20 3 1563 22 0 0 0 chr3 128260116 128260138 -31339645 + AT_rich Low_complexity Low_complexity 1 22 0 3 1563 556 78 422 0 chr3 128260145 128260247 -31339536 + B1_Mus1 SINE Alu 4 148 0 3 1563 620 292 49 98 chr3 128260443 128260616 -31339167 + B3 SINE B2 1 170 -46 3 1563 4902 70 71 3 chr3 128260616 128261292 -31338491 + L1_Mus1 LINE L1 5843 6564 -3 3 1563 404 292 49 98 chr3 128261292 128261323 -31338460 + B2_Mm2 SINE B2 162 194 -1 3 1563 1250 89 0 6 chr3 128263285 128263455 -31336328 + B2_Mm2 SINE B2 1 169 -26 3 1563 353 224 106 87 chr3 128264327 128264488 -31335295 - RSINE1 SINE B4 0 165 2 3 1563 6937 33 0 0 chr3 128264943 128265768 -31334015 + L1Md_F2 LINE L1 4762 5586 -297 3 1563 8229 37 3 0 chr3 128265768 128266758 -31333025 + L1Md_F2 LINE L1 5587 6579 -3 3 1563 1004 102 0 19 chr3 128269089 128269301 -31330482 + (TG)n Simple_repeat Simple_repeat 1 207 0 3 1563 1576 25 0 0 chr3 128269301 128269499 -31330284 - RLTRETN_Mm LTR ERVK -124 198 1 3 1563 2282 4 19 0 chr3 128269499 128269758 -31330025 - MMETn-int LTR ERVK 0 4844 4581 3 1563 937 112 0 22 chr3 128269764 128269947 -31329836 + (TG)n Simple_repeat Simple_repeat 1 179 0 3 1563 236 20 75 38 chr3 128270078 128270131 -31329652 + (TTTTG)n Simple_repeat Simple_repeat 1 55 0 3 1563 920 120 38 0 chr3 128270890 128271048 -31328735 - L1_Mus3 LINE L1 -7 6631 6468 3 1563 351 0 0 0 chr3 128271090 128271129 -31328654 + (T)n Simple_repeat Simple_repeat 1 39 0 3 1563 1164 74 0 0 chr3 128271129 128271277 -31328506 - B1_Mus1 SINE Alu 0 148 1 3 1563 214 242 19 39 chr3 128271376 128271479 -31328304 + T-rich Low_complexity Low_complexity 5 105 0 3 1563 596 276 13 19 chr3 128271697 128271856 -31327927 - Lx7 LINE L1 -927 6769 6612 3 1563 1055 217 91 26 chr3 128271856 128272163 -31327620 + Lx7 LINE L1 6767 7093 -603 3 1563 474 18 0 0 chr3 128272258 128272313 -31327470 + (TA)n Simple_repeat Simple_repeat 1 55 0 3 1563 724 205 19 0 chr3 128272343 128272504 -31327279 + Lx4B LINE L1 5117 5280 -597 3 1563 5638 205 89 19 chr3 128272497 128273838 -31325945 + Lx4B LINE L1 5619 7052 -6 3 1563 3862 68 0 10 chr3 128273848 128274357 -31325426 - L1Md_F2 LINE L1 0 6582 6079 3 1563 2049 312 62 31 chr3 128274592 128275452 -31324331 - Lx8 LINE L1 -196 7277 6392 3 1563 1830 274 73 38 chr3 128275586 128276804 -31322979 - Lx7 LINE L1 -1798 5898 4473 3 1563 776 65 9 0 chr3 128276885 128276992 -31322791 + (TC)n Simple_repeat Simple_repeat 2 109 0 3 1563 37 39 0 0 chr3 128277181 128277232 -31322551 + AT_rich Low_complexity Low_complexity 1 51 0 3 1563 803 88 7 7 chr3 128277637 128277774 -31322009 + L1_Mus4 LINE L1 6500 6636 0 3 1563 438 309 90 123 chr3 128279171 128279339 -31320444 + ORR1E LTR MaLR 3 139 -220 3 1563 441 0 0 0 chr3 128279339 128279388 -31320395 + (TG)n Simple_repeat Simple_repeat 2 50 0 3 1563 438 309 90 123 chr3 128279388 128279551 -31320232 + ORR1E LTR MaLR 140 323 -36 3 1563 541 265 85 5 chr3 128279555 128279756 -31320027 - L1M2 LINE L1 -1022 5560 5344 3 1563 244 269 0 0 chr3 128279778 128279856 -31319927 + CT-rich Low_complexity Low_complexity 1 78 0 3 1563 612 62 0 0 chr3 128279856 128279937 -31319846 + (TG)n Simple_repeat Simple_repeat 2 82 0 3 1563 395 303 0 39 chr3 128279938 128280120 -31319663 - L1M3 LINE L1 -1752 4388 4214 3 1563 3271 304 90 32 chr3 128280135 128282519 -31317264 - L1M2 LINE L1 -1865 4717 2145 3 1563 3661 51 2 0 chr3 128282519 128282970 -31316813 - L1_Mus1 LINE L1 0 6567 6116 3 1563 310 323 61 89 chr3 128282970 128283021 -31316762 - L1M2 LINE L1 -4705 2144 2094 3 1563 2281 188 29 13 chr3 128283336 128283783 -31316000 - Lx3C LINE L1 -4 6972 6519 4 1563 2208 190 2 21 chr3 128283795 128284215 -31315568 + Lx3C LINE L1 6104 6515 -461 4 1563 228 183 24 24 chr3 128284350 128284434 -31315349 + CT-rich Low_complexity Low_complexity 1 84 0 4 1563 258 292 38 0 chr3 128284495 128284628 -31315155 + L1_Mur3 LINE L1 2067 2210 -3637 4 1563 297 0 0 0 chr3 128284629 128284662 -31315121 + (CA)n Simple_repeat Simple_repeat 2 34 0 4 1563 3411 100 14 4 chr3 128286494 128286978 -31312805 - Lx3A LINE L1 -1 6980 6492 4 1563 14895 60 2 2 chr3 128287831 128289750 -31310033 + L1Md_F2 LINE L1 3667 5585 -298 4 1563 7437 62 12 7 chr3 128289751 128290737 -31309046 + L1Md_F2 LINE L1 5587 6577 -5 4 1563 4647 52 0 7 chr3 128290751 128291333 -31308450 + L1Md_F2 LINE L1 6005 6582 0 4 1563 378 0 0 0 chr3 128291549 128291591 -31308192 + (TG)n Simple_repeat Simple_repeat 2 43 0 4 1563 445 333 57 25 chr3 128291884 128292041 -31307742 - B3A SINE B2 -36 162 1 4 1563 22 0 0 0 chr3 128292046 128292068 -31307715 + AT_rich Low_complexity Low_complexity 1 22 0 4 1563 466 291 28 0 chr3 128292074 128292215 -31307568 + B1_Mur2 SINE Alu 3 147 -2 4 1563 230 200 0 18 chr3 128292215 128292271 -31307512 + (TAA)n Simple_repeat Simple_repeat 1 55 0 4 1563 446 203 2 38 chr3 128292711 128292828 -31306955 + L1_Mur3 LINE L1 5046 5175 -968 4 1563 292 320 68 0 chr3 128292827 128292930 -31306853 + Lx6 LINE L1 7297 7406 -54 4 1563 49 32 0 0 chr3 128292936 128292999 -31306784 + AT_rich Low_complexity Low_complexity 1 63 0 4 1563 309 289 88 0 chr3 128293347 128293506 -31306277 + L1MEc LINE L1 1702 1874 -4526 4 1563 539 297 24 10 chr3 128293617 128293836 -31305947 + Lx8 LINE L1 6921 7162 -311 4 1563 187 152 21 21 chr3 128293856 128293903 -31305880 + GA-rich Low_complexity Low_complexity 2 48 0 4 1563 243 235 40 30 chr3 128294068 128294169 -31305614 + L1_Mur3 LINE L1 5255 5356 -823 4 1563 600 81 0 0 chr3 128294396 128294483 -31305300 + (GA)n Simple_repeat Simple_repeat 2 88 0 4 1563 521 368 23 23 chr3 128294584 128294748 -31305035 - Ricksha DNA MuDR -815 2431 2265 4 1563 3226 78 0 0 chr3 128294748 128295181 -31304602 + L1Md_T LINE L1 6150 6582 0 4 1563 521 368 23 23 chr3 128295181 128295405 -31304378 - Ricksha DNA MuDR -982 2264 2044 4 1563 326 217 107 54 chr3 128295640 128295752 -31304031 - Ricksha DNA MuDR -1630 1616 1499 4 1563 23 86 0 0 chr3 128296041 128296099 -31303684 + AT_rich Low_complexity Low_complexity 1 58 0 4 1563 247 300 118 24 chr3 128296244 128296456 -31303327 + L1M5 LINE L1 3632 3863 -2283 4 1563 543 300 77 43 chr3 128296463 128296892 -31302891 + LTR40a LTR ERVL 12 506 -13 4 1563 436 321 53 92 chr3 128296915 128297261 -31302522 + L1M5 LINE L1 3894 4251 -1895 4 1563 1102 89 7 0 chr3 128297261 128297407 -31302376 + B1_Mus2 SINE Alu 1 147 0 4 1563 436 321 53 92 chr3 128297407 128297571 -31302212 + L1M5 LINE L1 4252 4384 -1762 4 1563 437 340 15 15 chr3 128297642 128297848 -31301935 + Lx9 LINE L1 7213 7418 -226 4 1563 827 176 14 35 chr3 128297850 128298025 -31301758 + RMER19C LTR ERVK 374 667 -70 4 1563 431 72 0 0 chr3 128298025 128298094 -31301689 + Lx2B LINE L1 6932 7000 0 4 1563 198 0 0 0 chr3 128298898 128298920 -31300863 + (TG)n Simple_repeat Simple_repeat 2 23 0 4 1563 23 0 0 0 chr3 128300045 128300068 -31299715 + AT_rich Low_complexity Low_complexity 1 23 0 4 1563 264 211 0 0 chr3 128300351 128300403 -31299380 - 5S rRNA rRNA -31 90 39 4 1563 628 282 30 50 chr3 128300743 128300941 -31298842 - B3A SINE B2 -1 197 4 4 1563 985 172 32 36 chr3 128302099 128302346 -31297437 + Lx7 LINE L1 7451 7696 0 4 1563 896 0 10 0 chr3 128303225 128303329 -31296454 + (CA)n Simple_repeat Simple_repeat 1 105 0 4 1563 243 0 0 0 chr3 128305404 128305431 -31294352 + (T)n Simple_repeat Simple_repeat 1 27 0 4 1563 1115 42 0 0 chr3 128305431 128305573 -31294210 - B1_Mm SINE Alu 0 147 6 4 1563 705 93 23 0 chr3 128306196 128306325 -31293458 + (GA)n Simple_repeat Simple_repeat 1 132 0 4 1563 203 0 37 0 chr3 128306539 128306566 -31293217 + (TTC)n Simple_repeat Simple_repeat 2 29 0 4 1563 570 128 0 0 chr3 128306752 128306846 -31292937 + (GA)n Simple_repeat Simple_repeat 1 94 0 4 1563 5487 13 0 0 chr3 128307355 128307975 -31291808 - L1Md_A LINE L1 0 6582 5963 4 1563 189 338 14 0 chr3 128308553 128308624 -31291159 - L2a LINE L2 0 3426 3355 4 1563 581 81 0 29 chr3 128309329 128309431 -31290352 + (TA)n Simple_repeat Simple_repeat 2 100 0 4 1563 186 133 0 0 chr3 128309689 128309719 -31290064 + (T)n Simple_repeat Simple_repeat 1 30 0 4 1563 301 375 80 134 chr3 128309799 128310098 -31289685 - B4A SINE B4 -8 284 2 4 1563 369 250 0 0 chr3 128312183 128312255 -31287528 - BC1_Mm scRNA scRNA -66 86 15 4 1563 208 385 63 13 chr3 128312277 128312435 -31287348 + L2 LINE L2 2688 2853 -566 4 1563 186 43 0 0 chr3 128312774 128312797 -31286986 + (T)n Simple_repeat Simple_repeat 1 23 0 4 1563 251 333 70 53 chr3 128313029 128313216 -31286567 - MIR SINE MIR -70 192 3 4 1563 1086 130 0 0 chr3 128313484 128313661 -31286122 + (TTCC)n Simple_repeat Simple_repeat 2 178 0 4 1563 194 91 0 29 chr3 128313662 128313696 -31286087 + (TCCC)n Simple_repeat Simple_repeat 4 36 0 4 1563 342 0 0 0 chr3 128315155 128315193 -31284590 + (TTA)n Simple_repeat Simple_repeat 3 40 0 4 1563 213 39 0 0 chr3 128317136 128317162 -31282621 + (T)n Simple_repeat Simple_repeat 1 26 0 4 1563 242 56 28 0 chr3 128318172 128318208 -31281575 + (TAAA)n Simple_repeat Simple_repeat 1 37 0 4 1563 281 329 175 0 chr3 128318328 128318465 -31281318 + MIR SINE MIR 27 187 -75 4 1563 279 289 111 40 chr3 128318926 128319052 -31280731 + MIRb SINE MIR 35 169 -99 4 1564 441 309 102 65 chr3 128319548 128320206 -31279577 - L1ME3 LINE L1 -60 6102 5421 4 1564 2408 109 36 18 chr3 128321240 128321633 -31278150 + Lx LINE L1 6243 6642 -12 4 1564 4705 118 1 6 chr3 128323202 128323909 -31275874 - L1_Mm LINE L1 -357 5526 4823 4 1564 4864 92 13 13 chr3 128323909 128324616 -31275167 + L1_Mus4 LINE L1 5918 6624 -12 4 1564 670 332 49 19 chr3 128324638 128324963 -31274820 - Lx8 LINE L1 -312 7161 6827 4 1564 29903 24 0 1 chr3 128325069 128329334 -31270449 - L1Md_T LINE L1 0 6582 2321 4 1564 433 200 116 0 chr3 128329477 128329572 -31270211 - B1_Mm SINE Alu -9 138 33 4 1564 261 276 107 48 chr3 128329509 128329612 -31270171 - MT2B LTR ERVL -351 250 142 4 1564 989 263 55 70 chr3 128331299 128331683 -31268100 - Lx9 LINE L1 -504 7140 6763 4 1564 1211 48 0 0 chr3 128331696 128331843 -31267940 + B1_Mus2 SINE Alu 1 147 0 4 1564 357 24 0 0 chr3 128331843 128331885 -31267898 + (A)n Simple_repeat Simple_repeat 1 42 0 4 1564 655 305 43 0 chr3 128331973 128332206 -31267577 + Lx9 LINE L1 7197 7439 -205 4 1564 2133 249 58 9 chr3 128332235 128332791 -31266992 + RMER1C Other Other 551 1133 -209 4 1564 932 250 81 34 chr3 128332846 128333231 -31266552 - L1MC1 LINE L1 -482 5851 5449 4 1564 1925 203 71 21 chr3 128333268 128333705 -31266078 + MT2A LTR ERVL 1 459 -74 4 1564 264 169 39 13 chr3 128333716 128333794 -31265989 + (TTATA)n Simple_repeat Simple_repeat 5 84 0 4 1564 465 0 120 0 chr3 128333797 128333872 -31265911 + (CATATA)n Simple_repeat Simple_repeat 5 88 0 4 1564 695 331 52 22 chr3 128334137 128334409 -31265374 - B4A SINE B4 -12 280 1 4 1564 335 263 53 0 chr3 128334521 128334616 -31265167 - L1MC1 LINE L1 -981 5165 5066 4 1564 421 319 89 40 chr3 128335561 128335888 -31263895 + Lx8 LINE L1 7118 7460 -13 4 1564 224 77 0 25 chr3 128336659 128336699 -31263084 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 4 1564 354 325 66 6 chr3 128337412 128337579 -31262204 + MLT1A1 LTR MaLR 196 372 -36 4 1564 500 205 30 45 chr3 128337634 128337767 -31262016 - RCHARR1 DNA MER1_type -4 970 840 4 1564 1607 253 59 90 chr3 128337839 128338416 -31261367 - RCHARR1 DNA MER1_type -332 642 84 4 1564 933 236 10 0 chr3 128338819 128339022 -31260761 + B3 SINE B2 5 209 -7 4 1564 3649 123 22 2 chr3 128340742 128341329 -31258454 - Lx LINE L1 -1 6653 6055 4 1564 210 114 0 54 chr3 128341475 128341512 -31258271 + (CTG)n Simple_repeat Simple_repeat 3 37 0 4 1564 1084 139 70 0 chr3 128341564 128341736 -31258047 + Lx LINE L1 6297 6480 -174 4 1564 33 56 0 0 chr3 128341742 128341796 -31257987 + AT_rich Low_complexity Low_complexity 1 54 0 4 1564 1063 29 14 7 chr3 128341799 128341938 -31257845 + (CATATA)n Simple_repeat Simple_repeat 3 142 0 4 1564 655 160 103 32 chr3 128342130 128342165 -31257618 + Lx LINE L1 6483 6518 -136 4 1564 180 0 0 0 chr3 128342165 128342185 -31257598 + (TGGG)n Simple_repeat Simple_repeat 2 21 0 4 1564 655 160 103 32 chr3 128342185 128342304 -31257479 + Lx LINE L1 6519 6646 -8 4 1564 3925 207 42 68 chr3 128342591 128343554 -31256229 - MTC-int LTR MaLR -319 939 2 4 1564 1790 184 59 76 chr3 128343557 128343980 -31255803 - MTC LTR MaLR -5 416 1 4 1564 803 333 104 15 chr3 128343998 128344153 -31255630 - L1M2 LINE L1 -1173 4970 4809 4 1564 504 59 0 0 chr3 128344153 128344221 -31255562 + (CCTAT)n Simple_repeat Simple_repeat 3 70 0 4 1564 803 333 104 15 chr3 128344221 128344866 -31254917 - L1M2 LINE L1 -1335 4808 4100 4 1564 708 193 11 17 chr3 128345004 128345183 -31254600 + GA-rich Low_complexity Low_complexity 3 180 0 4 1564 240 59 0 0 chr3 128345249 128345283 -31254500 + (CAAT)n Simple_repeat Simple_repeat 2 35 0 4 1564 871 92 25 112 chr3 128345392 128345552 -31254231 - B1_Mus1 SINE Alu -2 146 1 4 1564 466 355 62 15 chr3 128345830 128346102 -31253681 - Lx7 LINE L1 -876 6820 6536 4 1564 879 304 89 26 chr3 128346108 128346337 -31253446 + Lx8 LINE L1 6852 7106 -367 4 1564 216 0 0 0 chr3 128346337 128346361 -31253422 + (TA)n Simple_repeat Simple_repeat 2 25 0 4 1564 879 304 89 26 chr3 128346361 128346513 -31253270 + Lx8 LINE L1 7107 7257 -216 4 1564 391 267 51 51 chr3 128346537 128346695 -31253088 - Lx7 LINE L1 -887 6809 6652 4 1564 863 235 9 56 chr3 128346781 128346997 -31252786 + B3 SINE B2 1 206 -10 4 1564 2496 94 35 195 chr3 128347350 128347930 -31251853 + RMER17A LTR ERVK 1 487 -402 4 1564 5211 56 9 0 chr3 128347930 128348594 -31251189 - L1Md_F2 LINE L1 -2 6580 5911 4 1564 7511 43 2 0 chr3 128348594 128349567 -31250216 + L1Md_F2 LINE L1 4954 5929 -653 4 1564 2006 92 28 12 chr3 128349567 128349886 -31249897 + RMER17A LTR ERVK 426 749 -2 4 1564 225 143 0 0 chr3 128350626 128350661 -31249122 - MIRb SINE MIR -100 168 134 4 1564 271 134 36 24 chr3 128350915 128350999 -31248784 + (TCTA)n Simple_repeat Simple_repeat 4 88 0 4 1564 26 30 0 0 chr3 128351712 128351745 -31248038 + AT_rich Low_complexity Low_complexity 1 33 0 4 1564 303 52 17 33 chr3 128351752 128351812 -31247971 + (TTTTTG)n Simple_repeat Simple_repeat 2 60 0 5 1564 232 350 129 43 chr3 128353254 128353487 -31246296 + MLT1H LTR MaLR 72 324 -225 5 1564 2867 43 3 0 chr3 128353705 128354050 -31245733 + ORR1A0 LTR MaLR 1 346 0 5 1564 358 345 117 44 chr3 128354059 128354487 -31245296 + MLT1H-int LTR MaLR 37 495 -914 5 1564 271 225 35 70 chr3 128354507 128354593 -31245190 - MER76 LTR ERVL -11 680 598 5 1564 508 195 84 23 chr3 128354805 128354936 -31244847 + MTD LTR MaLR 11 149 -270 5 1564 485 244 16 16 chr3 128354930 128355059 -31244724 + MTD LTR MaLR 274 402 -17 5 1564 330 288 58 105 chr3 128355073 128355244 -31244539 - MER76 LTR ERVL -498 193 31 5 1564 3520 196 23 24 chr3 128355406 128356157 -31243626 - Lx2B LINE L1 0 7000 6251 5 1564 302 133 0 0 chr3 128356163 128356208 -31243575 + Lx2B LINE L1 6218 6262 -738 5 1564 26 30 0 0 chr3 128357062 128357095 -31242688 + AT_rich Low_complexity Low_complexity 1 33 0 5 1564 720 258 71 63 chr3 128357344 128357769 -31242014 - L1MA4 LINE L1 -259 6041 5604 5 1564 675 0 0 0 chr3 128357769 128357844 -31241939 + (TTTC)n Simple_repeat Simple_repeat 2 76 0 5 1564 720 258 71 63 chr3 128357844 128357894 -31241889 - L1MA4 LINE L1 -697 5603 5562 5 1564 656 56 11 0 chr3 128358004 128358093 -31241690 + (TC)n Simple_repeat Simple_repeat 1 90 0 5 1564 707 328 79 16 chr3 128358584 128358900 -31240883 + MLT1A0 LTR MaLR 28 363 -2 5 1564 268 377 44 34 chr3 128359194 128359400 -31240383 - L4 LINE RTE -201 1828 1621 5 1564 197 180 0 20 chr3 128360064 128360115 -31239668 + (TA)n Simple_repeat Simple_repeat 2 51 0 5 1564 180 0 0 0 chr3 128361023 128361043 -31238740 + (A)n Simple_repeat Simple_repeat 1 20 0 5 1564 1329 236 85 18 chr3 128361286 128361674 -31238109 + MTD LTR MaLR 5 418 -1 5 1564 329 210 0 0 chr3 128362905 128362967 -31236816 + MLT1H2 LTR MaLR 367 428 -61 5 1564 407 328 67 50 chr3 128363254 128363536 -31236247 - B4A SINE B4 -1 291 5 5 1564 311 375 59 53 chr3 128364339 128364677 -31235106 + L1MC4a LINE L1 5530 5869 -2013 5 1564 477 211 0 0 chr3 128365834 128365924 -31233859 - MTC LTR MaLR -331 90 1 5 1564 921 285 69 21 chr3 128366246 128366622 -31233161 - Lx6 LINE L1 -63 7397 7004 5 1564 25 0 0 0 chr3 128367678 128367703 -31232080 + AT_rich Low_complexity Low_complexity 1 25 0 5 1564 31 44 0 0 chr3 128369263 128369308 -31230475 + AT_rich Low_complexity Low_complexity 1 45 0 5 1564 22 0 0 0 chr3 128369505 128369527 -31230256 + AT_rich Low_complexity Low_complexity 1 22 0 5 1564 247 314 59 44 chr3 128369693 128369896 -31229887 - L2a LINE L2 -2 3424 3219 5 1564 1199 236 52 45 chr3 128370112 128370493 -31229290 - Lx2B LINE L1 -10 6990 6607 5 1564 518 98 0 12 chr3 128370633 128370716 -31229067 + (CAAAA)n Simple_repeat Simple_repeat 2 83 0 5 1564 189 0 0 0 chr3 128370764 128370785 -31228998 + (TG)n Simple_repeat Simple_repeat 2 22 0 5 1564 255 125 0 0 chr3 128372731 128372771 -31227012 + (A)n Simple_repeat Simple_repeat 1 40 0 5 1564 228 376 20 0 chr3 128375431 128375532 -31224251 + MIRb SINE MIR 93 195 -73 5 1564 1109 57 17 6 chr3 128376462 128376638 -31223145 + (TAGA)n Simple_repeat Simple_repeat 1 178 0 5 1564 650 76 19 0 chr3 128376662 128376767 -31223016 + (TAGA)n Simple_repeat Simple_repeat 4 110 0 5 1564 1643 157 8 138 chr3 128376768 128377137 -31222646 + ORR1A3 LTR MaLR 1 321 -5 5 1564 476 59 15 0 chr3 128377137 128377205 -31222578 + (TAGA)n Simple_repeat Simple_repeat 2 70 0 5 1564 212 337 129 0 chr3 128379250 128379351 -31220432 - MIRb SINE MIR -108 160 47 5 1564 217 186 0 55 chr3 128379360 128379451 -31220332 + T-rich Low_complexity Low_complexity 5 90 0 5 1564 2003 204 88 60 chr3 128379976 128380156 -31219627 - Lx6 LINE L1 -417 7043 6879 5 1564 723 24 0 0 chr3 128380156 128380241 -31219542 + (TCTA)n Simple_repeat Simple_repeat 4 88 0 5 1564 2003 204 88 60 chr3 128380241 128380561 -31219222 - Lx6 LINE L1 -582 6878 6529 5 1564 7601 65 4 4 chr3 128383972 128385488 -31214295 - L1Md_F2 LINE L1 -12 6570 5057 5 1564 2814 160 37 17 chr3 128385496 128386012 -31213771 - RLTR11A2 LTR ERVK -1 526 1 5 1564 471 337 74 17 chr3 128386088 128386384 -31213399 - L1MEb LINE L1 -5442 628 316 5 1564 187 331 108 39 chr3 128386928 128387057 -31212726 + MIRc SINE MIR 23 160 -108 5 1564 29 0 0 0 chr3 128387835 128387864 -31211919 + AT_rich Low_complexity Low_complexity 1 29 0 5 1564 348 414 50 25 chr3 128387921 128388201 -31211582 + B4A SINE B4 2 288 -4 5 1564 1068 283 73 14 chr3 128388422 128388712 -31211071 - MTEb LTR MaLR 0 379 74 5 1564 306 0 0 0 chr3 128388712 128388746 -31211037 + (CA)n Simple_repeat Simple_repeat 1 34 0 5 1564 1068 283 73 14 chr3 128388746 128388813 -31210970 - MTEb LTR MaLR -306 73 2 5 1564 207 0 0 0 chr3 128388885 128388908 -31210875 + (GA)n Simple_repeat Simple_repeat 2 24 0 5 1564 484 70 0 104 chr3 128389754 128389850 -31209933 - L1_Mm LINE L1 -293 5590 5508 5 1564 28 0 0 0 chr3 128389856 128389884 -31209899 + AT_rich Low_complexity Low_complexity 1 28 0 5 1564 764 271 42 5 chr3 128391313 128391502 -31208281 - B3 SINE B2 -15 201 6 5 1564 427 349 40 10 chr3 128391959 128392159 -31207624 - L1M2 LINE L1 -2956 3187 2982 5 1564 1153 82 0 0 chr3 128392164 128392310 -31207473 + B1_Mus2 SINE Alu 2 147 0 5 1564 180 0 0 0 chr3 128392310 128392330 -31207453 + (A)n Simple_repeat Simple_repeat 1 20 0 5 1564 4955 182 60 15 chr3 128392655 128393680 -31206103 - Lx5 LINE L1 -197 6853 5782 5 1564 37305 60 1 23 chr3 128393693 128400572 -31199211 - L1Md_T LINE L1 0 6582 99 5 1564 2343 135 28 10 chr3 128400573 128400963 -31198820 - L1_Mur2 LINE L1 -89 5788 5392 5 1564 1653 226 66 0 chr3 128401128 128401521 -31198262 + MTD LTR MaLR 1 419 0 5 1564 415 286 43 90 chr3 128402399 128402587 -31197196 - MLT1A LTR MaLR 0 374 196 5 1564 343 221 0 69 chr3 128403274 128403376 -31196407 + RMER21A LTR ERV1 400 494 -453 5 1564 707 271 62 0 chr3 128403336 128403513 -31196270 - MTEa-int LTR MaLR -1384 196 9 5 1564 841 314 43 125 chr3 128403533 128403822 -31195961 - MTEa LTR MaLR -18 361 94 5 1564 519 269 27 34 chr3 128403822 128403968 -31195815 + B1_Mur1 SINE Alu 1 145 -4 5 1564 841 314 43 125 chr3 128403968 128404071 -31195712 - MTEa LTR MaLR -286 93 1 5 1564 931 270 67 10 chr3 128404081 128404590 -31195193 + L1MC LINE L1 2736 3273 -2873 5 1564 1508 217 48 17 chr3 128404653 128405065 -31194718 + RCHARR1 DNA MER1_type 399 823 -151 5 1564 540 126 0 0 chr3 128405065 128405152 -31194631 + (TA)n Simple_repeat Simple_repeat 2 88 0 5 1564 366 232 20 0 chr3 128405155 128405254 -31194529 + RCHARR1 DNA MER1_type 816 916 -58 5 1564 370 330 123 63 chr3 128405579 128405944 -31193839 + L1MCb LINE L1 576 962 -5083 5 1564 324 306 38 0 chr3 128405984 128406141 -31193642 + L1MCb LINE L1 1088 1250 -5501 5 1564 289 215 11 0 chr3 128406266 128406359 -31193424 + L1MB5 LINE L1 5207 5300 -840 5 1564 422 309 65 19 chr3 128406407 128406562 -31193221 + RSINE1 SINE B4 4 165 0 5 1564 1451 212 18 30 chr3 128406618 128406949 -31192834 + RLTR11A LTR ERVK 202 528 0 5 1564 314 305 46 69 chr3 128406999 128407436 -31192347 + L1MB5 LINE L1 5458 5886 -298 5 1564 2771 156 106 47 chr3 128407502 128408080 -31191703 - RMER20B LTR ERVK -13 614 3 5 1564 308 322 7 0 chr3 128408279 128408425 -31191358 + L1MCb LINE L1 1263 1409 -5342 5 1564 300 325 64 29 chr3 128408622 128408936 -31190847 + L1MCb LINE L1 1649 1973 -4778 5 1564 379 258 57 72 chr3 128408952 128409161 -31190622 + B3A SINE B2 4 209 -7 5 1564 380 222 0 43 chr3 128410742 128410930 -31188853 + (CA)n Simple_repeat Simple_repeat 1 180 0 5 1564 599 201 6 0 chr3 128410943 128411112 -31188671 + (CA)n Simple_repeat Simple_repeat 2 171 0 5 1564 4245 50 0 9 chr3 128411176 128411706 -31188077 - L1Md_F3 LINE L1 -14 6570 6046 5 1564 1471 249 21 47 chr3 128412248 128412763 -31187020 - Lx9 LINE L1 -6 7638 7137 5 1564 229 135 39 0 chr3 128413060 128413112 -31186671 + (TA)n Simple_repeat Simple_repeat 1 54 0 5 1564 24 0 0 0 chr3 128413325 128413349 -31186434 + AT_rich Low_complexity Low_complexity 1 24 0 5 1564 25 83 0 0 chr3 128413913 128413973 -31185810 + AT_rich Low_complexity Low_complexity 1 60 0 5 1564 401 289 39 15 chr3 128414638 128414768 -31185015 - MLT1D LTR MaLR -67 438 306 5 1564 453 332 43 34 chr3 128414826 128415036 -31184747 - MLT1D LTR MaLR -415 212 3 5 1564 358 133 61 9 chr3 128415073 128415187 -31184596 + (CACTA)n Simple_repeat Simple_repeat 4 123 0 5 1564 914 72 6 44 chr3 128415201 128415361 -31184422 + (CTATA)n Simple_repeat Simple_repeat 5 158 0 5 1564 261 0 0 0 chr3 128415365 128415394 -31184389 + (CA)n Simple_repeat Simple_repeat 2 30 0 5 1564 346 355 58 10 chr3 128415871 128416076 -31183707 + ID_B1 SINE B4 2 216 -8 5 1564 276 302 61 20 chr3 128417422 128417520 -31182263 + MLT1F2 LTR MaLR 99 200 -360 5 1564 294 331 71 0 chr3 128417671 128417798 -31181985 + MLT1F2 LTR MaLR 420 555 -5 5 1564 1029 56 0 0 chr3 128417804 128417945 -31181838 + L1Md_F2 LINE L1 5462 5616 -626 5 1564 7519 77 3 4 chr3 128417946 128418941 -31180842 + L1Md_F2 LINE L1 5589 6582 0 5 1564 720 185 86 0 chr3 128419539 128419701 -31180082 - Lx9 LINE L1 -187 7457 7282 5 1564 305 24 24 0 chr3 128420504 128420546 -31179237 + (TG)n Simple_repeat Simple_repeat 2 44 0 5 1564 552 30 0 0 chr3 128420547 128420613 -31179170 + (GA)n Simple_repeat Simple_repeat 2 67 0 5 1564 324 319 0 0 chr3 128420617 128420686 -31179097 - RSINE1 SINE B4 -19 146 78 5 1564 198 330 87 10 chr3 128420971 128421075 -31178708 + L2a LINE L2 3282 3393 -33 5 1564 1128 82 7 0 chr3 128421221 128421368 -31178415 + B1_Mus1 SINE Alu 1 148 0 5 1564 1200 165 4 86 chr3 128424443 128424688 -31175095 - URR1B DNA MER1_type 0 225 1 5 1564 380 168 74 9 chr3 128424933 128425041 -31174742 - Lx9 LINE L1 -10 7634 7520 5 1564 198 103 0 0 chr3 128426449 128426478 -31173305 + (A)n Simple_repeat Simple_repeat 1 29 0 5 1564 243 146 0 0 chr3 128426512 128426553 -31173230 + (A)n Simple_repeat Simple_repeat 1 41 0 5 1564 246 265 29 14 chr3 128427898 128427967 -31171816 - MTE2a LTR MaLR -13 366 297 5 1564 303 340 134 12 chr3 128428248 128428495 -31171288 - L1MC3 LINE L1 -1285 6500 6224 5 1564 2163 146 6 6 chr3 128428615 128428953 -31170830 + ORR1A1 LTR MaLR 1 338 -8 5 1564 379 257 88 18 chr3 128428958 128429128 -31170655 - L1MEf LINE L1 -2425 3721 3540 5 1564 249 286 153 71 chr3 128429212 128429408 -31170375 - MLT1A1 LTR MaLR -196 212 1 5 1564 489 182 0 0 chr3 128429464 128429563 -31170220 + (TG)n Simple_repeat Simple_repeat 2 100 0 5 1564 525 323 126 53 chr3 128429567 128430143 -31169640 - L1MEf LINE L1 -3221 2925 2314 5 1564 1718 249 112 8 chr3 128430484 128431072 -31168711 - Lx9 LINE L1 -6 7638 6990 5 1564 280 278 0 107 chr3 128431111 128431232 -31168551 - Lx9 LINE L1 -532 7112 7005 5 1564 241 318 110 18 chr3 128431352 128431461 -31168322 - PB1D7 SINE Alu -1 119 1 5 1564 1155 56 0 27 chr3 128431981 128432128 -31167655 - B1_Mm SINE Alu -4 143 1 5 1564 1657 325 43 24 chr3 128432144 128433421 -31166362 - L1_Mur3 LINE L1 -47 5833 4532 6 1564 851 251 260 0 chr3 128433536 128433851 -31165932 - MTD LTR MaLR -2 417 21 6 1564 1012 300 51 82 chr3 128433928 128434059 -31165724 - L1_Mur3 LINE L1 -2663 3217 3101 6 1564 727 284 16 10 chr3 128434059 128434251 -31165532 - B3A SINE B2 -5 193 1 6 1564 1012 300 51 82 chr3 128434251 128435190 -31164593 - L1_Mur3 LINE L1 -2780 3100 2180 6 1564 250 267 47 0 chr3 128435336 128435422 -31164361 - L1MEf LINE L1 -3994 2248 2159 5 1564 2211 171 56 19 chr3 128435597 128436061 -31163722 - Lx5 LINE L1 -541 6509 6029 6 1564 723 206 0 8 chr3 128436062 128436194 -31163589 + B1_Mus2 SINE Alu 17 147 0 6 1564 300 53 0 0 chr3 128436194 128436232 -31163551 + (GGA)n Simple_repeat Simple_repeat 3 40 0 6 1564 1095 69 0 0 chr3 128436232 128436377 -31163406 + (GAGAA)n Simple_repeat Simple_repeat 3 147 0 6 1564 904 174 29 6 chr3 128436517 128436690 -31163093 - Lx3B LINE L1 -4 6969 6793 6 1564 335 209 8 25 chr3 128436690 128436808 -31162975 - L1_Rod LINE L1 -2366 3481 3366 6 1564 892 213 17 47 chr3 128436912 128437144 -31162639 - RMER1B Other Other -2 1064 840 6 1564 715 157 0 61 chr3 128437146 128437309 -31162474 - L1Md_F2 LINE L1 -1 6581 6429 6 1564 1486 118 20 0 chr3 128437313 128437558 -31162225 - L1_Mus3 LINE L1 -30 6608 6359 6 1564 442 43 29 0 chr3 128437560 128437629 -31162154 + (TTG)n Simple_repeat Simple_repeat 2 72 0 6 1564 560 47 0 44 chr3 128437630 128437720 -31162063 - L1_Mus3 LINE L1 -255 6383 6298 6 1564 1729 273 62 77 chr3 128437714 128438917 -31160866 - RMER1B Other Other -218 848 110 6 1564 2029 225 34 2 chr3 128439055 128439528 -31160255 + Lx9 LINE L1 6511 6998 -646 6 1564 3987 126 34 19 chr3 128439529 128440175 -31159608 + Lx4A LINE L1 6403 7058 0 6 1564 23 68 0 0 chr3 128440176 128440220 -31159563 + AT_rich Low_complexity Low_complexity 1 44 0 6 1564 1378 248 85 54 chr3 128440223 128440268 -31159515 + Lx9 LINE L1 6976 7019 -625 6 1564 230 0 33 0 chr3 128440268 128440298 -31159485 + (CAAA)n Simple_repeat Simple_repeat 4 34 0 6 1564 1378 248 85 54 chr3 128440298 128440862 -31158921 + Lx9 LINE L1 7020 7603 -41 6 1564 27 29 0 0 chr3 128440868 128440902 -31158881 + AT_rich Low_complexity Low_complexity 1 34 0 6 1564 246 317 43 6 chr3 128440975 128441137 -31158646 - L1_Mur3 LINE L1 -4073 1807 1640 6 1564 1472 222 6 48 chr3 128441157 128441469 -31158314 - MTC LTR MaLR -8 413 115 6 1564 3314 15 0 0 chr3 128441469 128441863 -31157920 + L1Md_A LINE L1 5193 5586 -297 6 1564 8586 27 0 0 chr3 128441863 128442859 -31156924 + L1Md_A LINE L1 5587 6582 0 6 1564 685 178 8 0 chr3 128442859 128442977 -31156806 - MTC LTR MaLR -302 119 1 6 1564 817 44 18 9 chr3 128443484 128443598 -31156185 + (TTTC)n Simple_repeat Simple_repeat 4 118 0 6 1564 357 24 0 0 chr3 128444786 128444828 -31154955 + (A)n Simple_repeat Simple_repeat 1 42 0 6 1564 228 314 78 0 chr3 128445037 128445190 -31154593 + L1_Rod LINE L1 746 910 -6262 6 1564 2000 306 105 39 chr3 128445268 128446370 -31153413 + L1_Mur3 LINE L1 1465 2674 -3206 6 1564 2175 122 21 9 chr3 128446370 128446708 -31153075 + Lx3A LINE L1 6634 6975 -6 6 1564 2000 306 105 39 chr3 128446708 128446841 -31152942 + L1_Mur3 LINE L1 2675 2793 -3087 6 1564 396 0 0 0 chr3 128446841 128446885 -31152898 + (TA)n Simple_repeat Simple_repeat 2 45 0 6 1564 2000 306 105 39 chr3 128446885 128447310 -31152473 + L1_Mur3 LINE L1 2794 3235 -2645 6 1564 1616 258 79 45 chr3 128447331 128447977 -31151806 + L1_Mur3 LINE L1 4186 4853 -1027 6 1564 1035 184 180 0 chr3 128447975 128448203 -31151580 - Lx9 LINE L1 -1064 6580 6312 6 1564 1495 172 32 21 chr3 128448242 128448527 -31151256 + L1_Rod LINE L1 5337 5624 -223 6 1564 255 125 0 0 chr3 128448529 128448569 -31151214 + (GGA)n Simple_repeat Simple_repeat 2 41 0 6 1564 477 295 99 37 chr3 128448577 128448739 -31151044 + B4 SINE B4 121 292 0 6 1564 2849 129 95 2 chr3 128448872 128449355 -31150428 - Lx3B LINE L1 -3 6970 6443 6 1564 1338 87 60 0 chr3 128449357 128449541 -31150242 + Lx3B LINE L1 6244 6438 -535 6 1565 228 35 0 0 chr3 128451970 128451999 -31147784 + (CA)n Simple_repeat Simple_repeat 2 30 0 6 1565 228 318 47 0 chr3 128452281 128452366 -31147417 + ID2 SINE ID 1 89 -63 6 1565 266 204 0 0 chr3 128453068 128453117 -31146666 - L1MD LINE L1 -2418 5577 5529 6 1565 544 288 231 8 chr3 128453260 128453737 -31146046 - L1MCa LINE L1 -895 5426 4844 6 1565 339 198 172 0 chr3 128453751 128453867 -31145916 - L1MCa LINE L1 -1550 4771 4636 6 1565 535 231 30 25 chr3 128453914 128454114 -31145669 - L1MCa LINE L1 -2231 4090 3890 6 1565 447 52 0 0 chr3 128454139 128454197 -31145586 + (TG)n Simple_repeat Simple_repeat 1 58 0 6 1565 4691 193 33 91 chr3 128454305 128454814 -31144969 + Lx7 LINE L1 5247 5774 -1922 6 1565 503 31 15 0 chr3 128454814 128454879 -31144904 + (GAAA)n Simple_repeat Simple_repeat 4 69 0 6 1565 4691 237 173 49 chr3 128454879 128454907 -31144876 + Lx7 LINE L1 5775 5775 -1921 6 1565 1169 101 0 11 chr3 128454907 128455087 -31144696 + (GAAA)n Simple_repeat Simple_repeat 3 180 0 6 1565 4691 237 173 49 chr3 128455087 128455101 -31144682 + Lx7 LINE L1 5775 5777 -1919 6 1565 1063 113 11 11 chr3 128455101 128455280 -31144503 + (GGGAA)n Simple_repeat Simple_repeat 2 180 0 6 1565 4691 237 173 49 chr3 128455280 128456534 -31143249 + Lx7 LINE L1 5778 7259 -437 6 1565 4863 142 60 19 chr3 128456610 128457463 -31142320 - Lx4B LINE L1 -83 6975 6088 6 1565 346 197 0 0 chr3 128457464 128457530 -31142253 + Lx7 LINE L1 7247 7312 -384 6 1565 407 334 92 24 chr3 128457597 128458011 -31141772 - L1MCa LINE L1 -3198 3123 2682 6 1565 335 157 0 0 chr3 128458069 128458120 -31141663 + B1_Mur4 SINE Alu 4 54 -96 6 1565 2277 281 119 44 chr3 128458200 128460050 -31139733 - L1MCa LINE L1 -3763 2558 558 6 1565 268 310 52 58 chr3 128460172 128460326 -31139457 - MER5B DNA MER1_type -5 173 21 6 1565 2570 195 72 84 chr3 128460560 128461310 -31138473 + Lx9 LINE L1 6884 7624 -20 6 1565 1657 94 19 23 chr3 128461320 128461580 -31138203 + L1_Mus3 LINE L1 6374 6632 -6 6 1565 392 202 36 9 chr3 128461594 128461704 -31138079 - L1MA7 LINE L1 -6 6285 6173 6 1565 554 323 78 100 chr3 128461967 128462428 -31137355 + MLT2B2 LTR ERVL 14 464 -51 6 1565 444 118 0 0 chr3 128462820 128462888 -31136895 + (ATG)n Simple_repeat Simple_repeat 2 69 0 6 1565 21 0 0 0 chr3 128463852 128463873 -31135910 + AT_rich Low_complexity Low_complexity 1 21 0 6 1565 978 34 0 0 chr3 128464013 128464131 -31135652 + (TCC)n Simple_repeat Simple_repeat 3 120 0 6 1565 1230 103 11 11 chr3 128464131 128464317 -31135466 - B2_Mm2 SINE B2 -8 187 2 6 1565 25 65 0 0 chr3 128464608 128464654 -31135129 + AT_rich Low_complexity Low_complexity 1 46 0 6 1565 189 74 0 0 chr3 128465070 128465097 -31134686 + (TA)n Simple_repeat Simple_repeat 2 28 0 6 1565 387 0 0 0 chr3 128465364 128465407 -31134376 + (TA)n Simple_repeat Simple_repeat 2 44 0 6 1565 299 365 139 5 chr3 128465647 128465834 -31133949 + MLT1I LTR MaLR 106 317 -94 6 1565 1945 171 67 6 chr3 128466378 128466724 -31133059 - ORR1B2 LTR MaLR 0 367 1 6 1565 1223 232 167 6 chr3 128467104 128467416 -31132367 + Lx6 LINE L1 7091 7452 -8 6 1565 324 356 27 7 chr3 128468189 128468339 -31131444 + MER5B DNA MER1_type 2 154 -24 6 1565 189 284 0 86 chr3 128470520 128470601 -31129182 - MIR SINE MIR -104 158 85 6 1565 288 257 14 28 chr3 128470606 128470678 -31129105 + RSINE1 SINE B4 8 78 -87 6 1565 254 379 52 15 chr3 128470720 128470854 -31128929 + B4A SINE B4 148 286 -6 6 1565 545 72 0 12 chr3 128470893 128470977 -31128806 + (CA)n Simple_repeat Simple_repeat 2 84 0 6 1565 1222 129 87 22 chr3 128471077 128471306 -31128477 - Lx LINE L1 -6 6648 6405 6 1565 238 266 15 30 chr3 128471306 128471372 -31128411 - RSINE1 SINE B4 -93 72 8 6 1565 954 101 118 6 chr3 128471453 128471614 -31128169 - Lx LINE L1 -256 6398 6237 6 1565 334 286 0 0 chr3 128472100 128472170 -31127613 + ID4 SINE ID 14 83 0 6 1565 180 77 0 0 chr3 128472941 128472967 -31126816 + (A)n Simple_repeat Simple_repeat 1 26 0 6 1565 23523 93 7 20 chr3 128473266 128477463 -31122320 + L1Md_A LINE L1 325 4464 -1419 6 1565 3148 35 5 0 chr3 128477462 128477838 -31121945 - L1Md_F2 LINE L1 -597 5985 5608 6 1565 21 0 0 0 chr3 128478127 128478148 -31121635 + AT_rich Low_complexity Low_complexity 1 21 0 6 1565 414 0 0 0 chr3 128478610 128478656 -31121127 + (TG)n Simple_repeat Simple_repeat 1 46 0 6 1565 405 0 0 0 chr3 128478656 128478700 -31121083 + (GA)n Simple_repeat Simple_repeat 1 45 0 6 1565 3156 97 16 2 chr3 128478945 128479389 -31120394 - L1_Mus4 LINE L1 -2 6634 6185 6 1565 24 32 0 0 chr3 128479486 128479517 -31120266 + AT_rich Low_complexity Low_complexity 1 31 0 6 1565 1005 258 88 24 chr3 128479530 128479940 -31119843 - Lx9 LINE L1 0 7644 7209 6 1565 29665 60 1 0 chr3 128479958 128484456 -31115327 - L1Md_F2 LINE L1 -12 6573 2077 6 1565 7717 9 0 0 chr3 128484449 128485313 -31114470 - L1Md_A LINE L1 0 6582 5719 6 1565 5314 10 0 3 chr3 128485312 128485917 -31113866 + L1Md_A LINE L1 5081 5683 -200 6 1565 6236 79 5 1 chr3 128485903 128486896 -31112887 - L1Md_F2 LINE L1 -3791 2095 1003 6 1565 1517 58 5 5 chr3 128486896 128487105 -31112678 - L1Md_F2 LINE L1 -2 6580 6372 6 1565 3805 95 19 5 chr3 128487105 128487536 -31112247 - L1Md_F2 LINE L1 -5520 1002 565 6 1565 256 128 0 0 chr3 128487529 128487568 -31112215 - L1Md_F2 LINE L1 -6282 337 299 6 1565 32 26 0 0 chr3 128487615 128487654 -31112129 + AT_rich Low_complexity Low_complexity 1 39 0 6 1565 360 0 0 0 chr3 128487802 128487842 -31111941 + (TA)n Simple_repeat Simple_repeat 2 41 0 6 1565 1110 182 51 0 chr3 128488348 128488562 -31111221 + URR1B DNA MER1_type 1 225 0 6 1565 391 263 119 19 chr3 128488654 128488813 -31110970 - MER44B DNA MER2_type -48 502 328 6 1565 1099 187 85 13 chr3 128488819 128489117 -31110666 - ORR1D1 LTR MaLR -11 348 1 6 1565 300 330 10 0 chr3 128489122 128489222 -31110561 - MER44B DNA MER2_type -435 115 15 6 1565 713 235 68 47 chr3 128489532 128489724 -31110059 + B3A SINE B2 2 197 -1 6 1565 25 65 0 0 chr3 128490364 128490410 -31109373 + AT_rich Low_complexity Low_complexity 1 46 0 6 1565 187 329 93 25 chr3 128491072 128491234 -31108549 - L2a LINE L2 -44 3382 3210 6 1565 212 100 0 24 chr3 128491615 128491656 -31108127 + (TTA)n Simple_repeat Simple_repeat 3 42 0 6 1565 4756 93 4 16 chr3 128491684 128492371 -31107412 - L1_Mus4 LINE L1 -8 6628 5950 6 1565 4299 129 67 11 chr3 128492392 128493099 -31106684 - Lx3B LINE L1 0 6973 6228 6 1565 806 172 0 11 chr3 128496438 128496620 -31103163 + (TG)n Simple_repeat Simple_repeat 1 180 0 6 1565 291 224 13 26 chr3 128496620 128496698 -31103085 + (TATATG)n Simple_repeat Simple_repeat 2 78 0 6 1565 648 239 0 4 chr3 128496698 128497168 -31102615 + (TG)n Simple_repeat Simple_repeat 1 467 0 6 1565 228 233 9 28 chr3 128497154 128497260 -31102523 + (TATG)n Simple_repeat Simple_repeat 3 106 0 6 1565 564 228 0 22 chr3 128497250 128497434 -31102349 + (TG)n Simple_repeat Simple_repeat 1 180 0 6 1565 22 56 0 0 chr3 128498526 128498562 -31101221 + AT_rich Low_complexity Low_complexity 1 36 0 6 1565 272 296 116 53 chr3 128499609 128499816 -31099967 + L3 LINE CR1 3980 4199 -290 6 1565 423 0 0 0 chr3 128501012 128501059 -31098724 + (CA)n Simple_repeat Simple_repeat 1 47 0 1 1565 182 0 107 0 chr3 128502172 128502200 -31097583 + (TTTTG)n Simple_repeat Simple_repeat 5 35 0 2 1565 579 273 14 27 chr3 128502201 128502348 -31097435 - ID_B1 SINE B4 0 224 80 3 1565 493 310 37 25 chr3 128502872 128503034 -31096749 + RSINE1 SINE B4 2 165 0 4 1565 25 0 0 0 chr3 128503056 128503081 -31096702 + AT_rich Low_complexity Low_complexity 1 25 0 5 1565 4811 55 3 0 chr3 128503495 128504095 -31095688 + L1Md_F2 LINE L1 5969 6570 -12 6 1565 459 0 0 0 chr3 128504217 128504268 -31095515 + (CA)n Simple_repeat Simple_repeat 2 52 0 7 1565 38764 14 0 0 chr3 128505187 128511305 -31088478 - L1Md_A LINE L1 -1 6581 464 8 1565 854 118 0 11 chr3 128511840 128512020 -31087763 + (TCTCCC)n Simple_repeat Simple_repeat 1 178 0 9 1565 1125 224 50 0 chr3 128512097 128512418 -31087365 - Lx9 LINE L1 -3 7641 7305 1 1565 593 219 98 59 chr3 128512421 128512625 -31087158 + Lx9 LINE L1 6935 7146 -498 1 1565 582 267 88 27 chr3 128512625 128512808 -31086975 + B3 SINE B2 4 198 0 1 1565 343 254 132 0 chr3 128512828 128512942 -31086841 + Lx9 LINE L1 7162 7290 -354 1 1565 1085 90 7 0 chr3 128513520 128513665 -31086118 + B1_Mm SINE Alu 2 147 0 1 1565 24 32 0 0 chr3 128513760 128513791 -31085992 + AT_rich Low_complexity Low_complexity 1 31 0 1 1565 264 122 0 0 chr3 128513797 128513838 -31085945 + (TA)n Simple_repeat Simple_repeat 2 42 0 1 1565 216 306 166 0 chr3 128513870 128513961 -31085822 + MIRb SINE MIR 8 117 -151 1 1565 428 366 45 19 chr3 128514109 128514265 -31085518 - RSINE1 SINE B4 -2 163 4 1 1565 935 102 0 9 chr3 128514322 128514541 -31085242 + (TC)n Simple_repeat Simple_repeat 1 216 0 1 1565 351 0 0 0 chr3 128514541 128514579 -31085204 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 1565 475 285 32 8 chr3 128514580 128514704 -31085079 - B3 SINE B2 -89 127 1 1 1565 391 291 152 17 chr3 128514712 128514890 -31084893 - MIR SINE MIR -46 216 15 2 1565 1174 270 112 38 chr3 128515791 128516954 -31082829 - L1MA6 LINE L1 -21 6279 5028 2 1565 237 354 14 0 chr3 128517077 128517221 -31082562 + L1MB5 LINE L1 5915 6060 -114 2 1565 334 354 54 42 chr3 128517460 128517720 -31082063 - MLT1H-int LTR MaLR -898 511 249 2 1565 2863 166 26 55 chr3 128517816 128518508 -31081275 + L1VL4 LINE L1 799 1498 -2414 2 1565 1125 96 0 17 chr3 128518508 128518689 -31081094 + (GGAGAA)n Simple_repeat Simple_repeat 3 180 0 2 1565 2863 148 27 122 chr3 128518689 128519194 -31080589 + L1VL4 LINE L1 1499 1931 -1981 2 1565 9835 171 48 3 chr3 128519197 128522109 -31077674 + Lx3C LINE L1 3944 6972 -4 2 1565 1541 112 64 0 chr3 128522113 128522363 -31077420 - Lx LINE L1 -1 6653 6388 2 1565 777 295 5 5 chr3 128523591 128523785 -31075998 + B4 SINE B4 87 280 -12 2 1565 26 64 0 0 chr3 128523887 128523934 -31075849 + AT_rich Low_complexity Low_complexity 1 47 0 2 1565 311 274 46 22 chr3 128524096 128524233 -31075550 - Lx9 LINE L1 -238 7406 7161 3 1565 254 95 0 23 chr3 128524259 128524302 -31075481 + (TCCCC)n Simple_repeat Simple_repeat 3 44 0 3 1565 1052 119 0 6 chr3 128524305 128524474 -31075309 + (TTC)n Simple_repeat Simple_repeat 2 169 0 3 1565 1629 267 8 28 chr3 128524489 128524889 -31074894 + MTD LTR MaLR 20 411 -8 3 1565 887 297 14 43 chr3 128524928 128525280 -31074503 - Lx9 LINE L1 -516 7128 6787 3 1565 188 341 23 12 chr3 128526239 128526325 -31073458 + MIRb SINE MIR 182 268 0 3 1565 22 0 0 0 chr3 128526493 128526515 -31073268 + AT_rich Low_complexity Low_complexity 1 22 0 3 1565 522 0 0 0 chr3 128527183 128527241 -31072542 + (TA)n Simple_repeat Simple_repeat 2 59 0 3 1565 372 103 0 0 chr3 128527679 128527737 -31072046 + (TA)n Simple_repeat Simple_repeat 1 58 0 3 1565 21 0 0 0 chr3 128528421 128528442 -31071341 + AT_rich Low_complexity Low_complexity 1 21 0 3 1565 189 175 0 0 chr3 128528637 128528677 -31071106 + T-rich Low_complexity Low_complexity 1 40 0 3 1565 806 228 10 25 chr3 128528852 128529050 -31070733 - B3A SINE B2 -3 195 1 4 1565 1369 194 139 153 chr3 128533652 128534193 -31065590 - MT2A LTR ERVL 0 533 1 4 1565 2778 3 0 0 chr3 128535744 128536091 -31063692 + L1Md_T LINE L1 6275 6582 0 4 1565 450 344 35 39 chr3 128536671 128536901 -31062882 + B4A SINE B4 45 273 -19 4 1565 219 88 0 0 chr3 128536919 128536953 -31062830 + (CA)n Simple_repeat Simple_repeat 1 34 0 4 1565 230 148 19 0 chr3 128537013 128537067 -31062716 + (CAGA)n Simple_repeat Simple_repeat 2 56 0 4 1565 480 359 35 35 chr3 128537458 128537712 -31062071 + MLT2B2 LTR ERVL 3 256 -259 4 1565 1213 241 70 17 chr3 128537853 128538211 -31061572 - Lx8 LINE L1 -359 7114 6738 4 1565 1066 255 48 46 chr3 128538256 128538650 -31061133 - Lx8 LINE L1 -823 6650 6256 4 1565 23 33 0 0 chr3 128539249 128539279 -31060504 + AT_rich Low_complexity Low_complexity 1 30 0 4 1565 556 308 40 32 chr3 128539784 128540032 -31059751 - L1MB7 LINE L1 -18 6166 5917 4 1565 669 288 71 92 chr3 128540034 128540341 -31059442 + MLT1B LTR MaLR 1 320 -70 5 1565 682 262 23 37 chr3 128540341 128540559 -31059224 + B3 SINE B2 2 216 0 5 1565 669 288 71 92 chr3 128540559 128540633 -31059150 + MLT1B LTR MaLR 321 374 -16 5 1565 246 204 0 0 chr3 128540737 128540786 -31058997 + RLTR40 LTR ERVK 5 53 -764 5 1565 306 361 9 9 chr3 128540906 128541016 -31058767 + PB1D10 SINE Alu 1 110 -10 5 1565 24 0 0 0 chr3 128542080 128542104 -31057679 + AT_rich Low_complexity Low_complexity 1 24 0 5 1565 255 267 16 99 chr3 128542181 128542372 -31057411 + L1MA4 LINE L1 6032 6206 -94 5 1565 1128 107 0 0 chr3 128543495 128543673 -31056110 - MusHAL1 LINE L1 -619 2093 1916 5 1565 5647 69 30 0 chr3 128543668 128544630 -31055153 + L1_Mus1 LINE L1 5389 6378 -189 5 1565 304 193 24 0 chr3 128545318 128545401 -31054382 + (TA)n Simple_repeat Simple_repeat 1 85 0 5 1565 207 162 0 0 chr3 128545546 128545583 -31054200 + CT-rich Low_complexity Low_complexity 3 39 0 5 1565 216 0 0 0 chr3 128545704 128545728 -31054055 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 6 1565 1064 75 0 0 chr3 128545728 128545861 -31053922 - B1_Mus2 SINE Alu -10 137 5 6 1565 278 286 48 0 chr3 128545897 128545981 -31053802 + B4A SINE B4 1 88 -204 6 1565 301 296 45 84 chr3 128545993 128546148 -31053635 + B4A SINE B4 136 284 -8 6 1565 270 0 0 0 chr3 128546666 128546696 -31053087 + (T)n Simple_repeat Simple_repeat 1 30 0 6 1565 253 162 26 26 chr3 128547364 128547440 -31052343 + (TATAA)n Simple_repeat Simple_repeat 2 77 0 6 1565 198 0 0 0 chr3 128547726 128547748 -31052035 + (A)n Simple_repeat Simple_repeat 1 22 0 6 1565 311 382 25 10 chr3 128548013 128548214 -31051569 + MIR SINE MIR 13 216 -46 6 1565 331 305 92 8 chr3 128548247 128548366 -31051417 + MER2B DNA MER2_type 2 130 -206 6 1565 363 262 38 0 chr3 128548595 128548675 -31051108 + MER2B DNA MER2_type 220 302 -34 6 1565 214 319 56 14 chr3 128548819 128548962 -31050821 + MIRb SINE MIR 99 247 -21 6 1565 1982 188 112 46 chr3 128549893 128550072 -31049711 + Lx9 LINE L1 6856 7037 -607 6 1565 267 31 0 0 chr3 128550072 128550104 -31049679 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 7 1565 1982 189 225 45 chr3 128550104 128550592 -31049191 + Lx9 LINE L1 7038 7622 -22 6 1565 687 275 6 6 chr3 128551194 128551377 -31048406 - B3A SINE B2 -38 178 1 7 1565 545 288 122 12 chr3 128551408 128551580 -31048203 + B3 SINE B2 6 196 -2 7 1565 28 48 0 0 chr3 128552180 128552222 -31047561 + AT_rich Low_complexity Low_complexity 1 42 0 7 1565 200 227 0 0 chr3 128555571 128555615 -31044168 + T-rich Low_complexity Low_complexity 1 44 0 7 1565 275 152 0 33 chr3 128557151 128557212 -31042571 + T-rich Low_complexity Low_complexity 1 59 0 7 1565 618 82 0 0 chr3 128557284 128557369 -31042414 + (GAAA)n Simple_repeat Simple_repeat 2 86 0 7 1565 294 180 0 0 chr3 128558466 128558527 -31041256 + GA-rich Low_complexity Low_complexity 2 62 0 7 1565 288 0 0 0 chr3 128558970 128559002 -31040781 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 7 1565 441 54 0 0 chr3 128559324 128559380 -31040403 + (TG)n Simple_repeat Simple_repeat 1 56 0 7 1565 212 179 0 51 chr3 128560469 128560528 -31039255 + A-rich Low_complexity Low_complexity 2 57 0 8 1565 3094 159 7 9 chr3 128562046 128562603 -31037180 - L1_Mur2 LINE L1 -394 5483 4928 8 1565 963 111 116 12 chr3 128562624 128562797 -31036986 - B2_Mm2 SINE B2 -4 191 1 8 1565 206 320 0 49 chr3 128562883 128562965 -31036818 + L2a LINE L2 3262 3339 -87 8 1565 582 335 58 36 chr3 128563054 128563330 -31036453 + B4A SINE B4 1 282 -10 8 1565 275 324 157 35 chr3 128563599 128564031 -31035752 + L2 LINE L2 1630 2114 -1305 8 1565 463 273 35 14 chr3 128564032 128564173 -31035610 + B1F1 SINE Alu 1 144 -5 8 1565 193 340 158 79 chr3 128564295 128564800 -31034983 + L2 LINE L2 2204 2748 -671 8 1565 184 262 0 45 chr3 128565149 128565193 -31034590 + L2a LINE L2 3302 3343 -83 8 1565 271 136 17 17 chr3 128565247 128565307 -31034476 + GA-rich Low_complexity Low_complexity 3 62 0 8 1565 196 214 28 14 chr3 128565355 128565426 -31034357 + GA-rich Low_complexity Low_complexity 2 73 0 8 1565 552 15 0 0 chr3 128566500 128566565 -31033218 + (TG)n Simple_repeat Simple_repeat 2 66 0 8 1565 198 191 0 0 chr3 128567211 128567253 -31032530 + (TTG)n Simple_repeat Simple_repeat 3 44 0 9 1565 731 340 51 4 chr3 128568342 128568578 -31031205 + B4A SINE B4 28 274 -18 9 1565 31 44 0 0 chr3 128569533 128569578 -31030205 + AT_rich Low_complexity Low_complexity 1 45 0 9 1565 480 101 22 51 chr3 128569636 128569730 -31030053 - PB1D9 SINE Alu -7 142 42 9 1565 256 259 0 79 chr3 128569812 128569875 -31029908 - B1_Mus2 SINE Alu -88 59 2 9 1565 602 316 23 0 chr3 128570982 128571156 -31028627 + B3 SINE B2 1 178 -38 9 1565 344 282 0 14 chr3 128571199 128571271 -31028512 + ID4 SINE ID 9 79 -4 9 1565 1121 61 0 20 chr3 128571395 128571545 -31028238 + B1_Mus1 SINE Alu 2 148 0 9 1565 962 140 0 6 chr3 128571564 128571744 -31028039 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 9 1565 1715 120 52 4 chr3 128572350 128572618 -31027165 - Lx2 LINE L1 0 6997 6717 9 1565 505 317 69 12 chr3 128573102 128573380 -31026403 - L1MA4 LINE L1 -1788 5908 5617 1 1565 828 274 28 0 chr3 128575281 128575493 -31024290 - ID_B1 SINE B4 -6 218 1 1 1565 670 322 5 104 chr3 128576668 128576890 -31022893 + ID_B1 SINE B4 18 217 -7 1 1565 219 233 26 13 chr3 128577258 128577410 -31022373 + (TA)n Simple_repeat Simple_repeat 1 154 0 1 1565 1527 37 0 0 chr3 128577655 128577844 -31021939 + L1Md_A LINE L1 6394 6582 0 1 1565 286 285 189 18 chr3 128578004 128578279 -31021504 + L1MA5 LINE L1 5969 6290 -10 1 1565 244 293 75 57 chr3 128578800 128578959 -31020824 - L1M5 LINE L1 -643 5597 5436 1 1565 556 298 5 48 chr3 128579040 128579229 -31020554 - B3A SINE B2 0 216 36 1 1565 2188 103 146 0 chr3 128579235 128579820 -31019963 + L1_Mus4 LINE L1 6237 6636 0 1 1565 318 357 83 36 chr3 128579824 128580184 -31019599 - L1M5 LINE L1 -783 5363 4987 1 1565 441 54 0 0 chr3 128580702 128580758 -31019025 + (CA)n Simple_repeat Simple_repeat 2 57 0 1 1565 318 132 0 0 chr3 128580866 128580919 -31018864 + (TTGG)n Simple_repeat Simple_repeat 2 54 0 1 1565 21 57 0 0 chr3 128581351 128581386 -31018397 + AT_rich Low_complexity Low_complexity 1 35 0 1 1566 30 77 0 0 chr3 128584553 128584618 -31015165 + AT_rich Low_complexity Low_complexity 1 65 0 1 1566 24 32 0 0 chr3 128585741 128585772 -31014011 + AT_rich Low_complexity Low_complexity 1 31 0 1 1566 198 71 0 0 chr3 128586610 128586638 -31013145 + (TTG)n Simple_repeat Simple_repeat 3 30 0 1 1566 315 0 0 0 chr3 128587848 128587883 -31011900 + (TG)n Simple_repeat Simple_repeat 2 36 0 1 1566 21 0 0 0 chr3 128593086 128593107 -31006676 + AT_rich Low_complexity Low_complexity 1 21 0 1 1566 225 65 0 0 chr3 128593391 128593422 -31006361 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 1 1566 484 106 0 21 chr3 128593601 128593697 -31006086 - L1_Mus3 LINE L1 -2 6636 6543 1 1566 242 318 16 16 chr3 128594446 128594574 -31005209 + (TAGA)n Simple_repeat Simple_repeat 3 130 0 1 1566 446 320 8 45 chr3 128595861 128595995 -31003788 + RSINE1 SINE B4 1 129 -36 1 1566 297 151 0 0 chr3 128596030 128596083 -31003700 + (CAA)n Simple_repeat Simple_repeat 2 54 0 1 1566 746 183 0 37 chr3 128596093 128596229 -31003554 - B1_Mur4 SINE Alu -10 140 10 1 1566 259 360 0 35 chr3 128596598 128596713 -31003070 + ORR1D1 LTR MaLR 1 111 -263 1 1566 851 31 0 0 chr3 128596713 128596810 -31002973 + L1Md_F2 LINE L1 6275 6371 -211 1 1566 779 44 9 0 chr3 128596810 128596923 -31002860 + L1Md_F2 LINE L1 6469 6582 0 1 1566 250 206 0 113 chr3 128597116 128597187 -31002596 + ORR1D1 LTR MaLR 280 342 -37 1 1566 260 292 0 0 chr3 128597219 128597284 -31002499 + GA-rich Low_complexity Low_complexity 2 66 0 1 1566 418 279 0 85 chr3 128597388 128597541 -31002242 + L1MD2 LINE L1 5894 6033 -209 1 1566 307 267 32 32 chr3 128597619 128597712 -31002071 + MTD LTR MaLR 6 98 -321 1 1566 182 222 0 53 chr3 128598051 128598108 -31001675 - L3 LINE CR1 -278 4211 4158 1 1566 1332 265 11 21 chr3 128598108 128598490 -31001293 + MTE2b LTR MaLR 1 378 -1 1 1566 21 36 0 0 chr3 128598639 128598667 -31001116 + AT_rich Low_complexity Low_complexity 1 28 0 1 1566 1133 54 0 20 chr3 128598739 128598889 -31000894 + B1_Mus1 SINE Alu 2 148 0 1 1566 259 356 47 19 chr3 128599143 128599249 -31000534 - PB1D10 SINE Alu -6 111 3 1 1566 842 302 71 45 chr3 128599562 128599866 -30999917 + Lx9 LINE L1 6530 6845 -799 1 1566 1140 268 64 3 chr3 128599866 128600211 -30999572 + ORR1D1 LTR MaLR 5 370 -4 1 1566 842 302 71 45 chr3 128600211 128600287 -30999496 + Lx9 LINE L1 6846 6920 -724 1 1566 519 218 7 13 chr3 128600312 128600461 -30999322 + (CATATA)n Simple_repeat Simple_repeat 2 149 0 1 1566 618 349 12 33 chr3 128600461 128600796 -30998987 + Lx8 LINE L1 6795 7122 -351 1 1566 1296 7 0 0 chr3 128602026 128602173 -30997610 + B1_Mm SINE Alu 1 147 0 1 1566 222 291 0 75 chr3 128602617 128602710 -30997073 + MIR3 SINE MIR 114 199 -9 1 1566 294 248 128 0 chr3 128602716 128602812 -30996971 + PB1D10 SINE Alu 13 120 0 1 1566 1125 95 0 0 chr3 128603269 128603417 -30996366 + B1_Mus1 SINE Alu 1 148 0 1 1566 4511 60 17 2 chr3 128603872 128604455 -30995328 - L1_Mus3 LINE L1 -437 6201 5610 1 1566 347 93 0 0 chr3 128604455 128604498 -30995285 + L1_Mus3 LINE L1 5535 5577 -306 1 1566 566 250 20 41 chr3 128604536 128604732 -30995051 - Lx9 LINE L1 -178 7466 7275 1 1566 656 259 10 58 chr3 128604788 128604993 -30994790 - Lx9 LINE L1 -512 7132 6938 1 1566 182 65 65 0 chr3 128606029 128606060 -30993723 + (GAAAA)n Simple_repeat Simple_repeat 2 34 0 1 1566 842 256 44 0 chr3 128606344 128606547 -30993236 + B3 SINE B2 1 212 -4 1 1566 202 316 12 25 chr3 128606548 128606629 -30993154 + MIRb SINE MIR 187 266 -2 1 1566 360 0 0 0 chr3 128608205 128608245 -30991538 + (TG)n Simple_repeat Simple_repeat 2 41 0 1 1566 5097 58 2 0 chr3 128608569 128609208 -30990575 + L1Md_F2 LINE L1 5931 6570 -12 1 1566 241 312 54 31 chr3 128609412 128609541 -30990242 + L2 LINE L2 2631 2762 -657 1 1566 333 386 54 33 chr3 128609567 128609808 -30989975 - MER45C DNA Tip100 -7 946 701 1 1566 3973 92 34 3 chr3 128610251 128610840 -30988943 + Lx3_Mus LINE L1 5735 6341 -668 1 1566 636 275 0 40 chr3 128610893 128611041 -30988742 + B4 SINE B4 45 186 -106 1 1566 323 282 19 0 chr3 128611834 128611960 -30987823 + L1MA5A LINE L1 5736 5866 -431 1 1566 1428 217 44 151 chr3 128611969 128612137 -30987646 - MTB_Mm LTR MaLR -4 403 273 1 1566 8104 45 2 3 chr3 128612137 128613134 -30986649 + L1Md_F2 LINE L1 5587 6582 0 1 1566 1428 217 44 151 chr3 128613134 128613416 -30986367 - MTB_Mm LTR MaLR -135 272 1 1 1566 361 219 124 71 chr3 128615270 128615383 -30984400 + PB1 SINE Alu 9 127 0 1 1566 217 328 0 0 chr3 128615480 128615547 -30984236 + (TG)n Simple_repeat Simple_repeat 2 68 0 1 1566 424 352 50 13 chr3 128616334 128616633 -30983150 - L2 LINE L2 -706 2713 2404 1 1566 326 218 51 13 chr3 128617698 128617777 -30982006 + HAL1-3A_ME LINE L1 1973 2054 -804 1 1566 2977 54 3 0 chr3 128617847 128618220 -30981563 - L1Md_F2 LINE L1 -12 6570 6197 1 1566 414 57 0 0 chr3 128618220 128618273 -30981510 + L1Md_F2 LINE L1 6051 6103 -479 1 1566 509 325 68 44 chr3 128618577 128618783 -30981000 - B3 SINE B2 0 216 6 1 1566 497 261 21 63 chr3 128619540 128619683 -30980100 + B1_Mur2 SINE Alu 1 137 -12 1 1566 1415 71 47 14 chr3 128620036 128620249 -30979534 - L1Md_F2 LINE L1 0 6582 6363 1 1566 2847 65 5 0 chr3 128620249 128620633 -30979150 + L1Md_F2 LINE L1 5837 6222 -360 1 1566 201 39 0 0 chr3 128620643 128620669 -30979114 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1 1566 5175 51 0 0 chr3 128620688 128621319 -30978464 - L1Md_F2 LINE L1 -14 6568 5938 1 1566 221 297 32 98 chr3 128621625 128621748 -30978035 - MamSINE1 SINE tRNA -160 130 16 1 1566 517 331 0 14 chr3 128622757 128622895 -30976888 + RSINE1 SINE B4 3 138 -27 1 1566 255 31 0 0 chr3 128622919 128622951 -30976832 + (CA)n Simple_repeat Simple_repeat 2 33 0 1 1566 476 346 31 28 chr3 128623183 128623426 -30976357 + B4A SINE B4 2 250 -42 1 1566 375 291 54 81 chr3 128623863 128624084 -30975699 + MLT1B-int LTR MaLR 18 232 -1177 1 1566 504 267 116 67 chr3 128624166 128624485 -30975298 + MLT1B LTR MaLR 63 467 0 1 1566 492 32 0 0 chr3 128624792 128624854 -30974929 + (TG)n Simple_repeat Simple_repeat 2 63 0 1 1566 226 302 36 54 chr3 128625259 128625371 -30974412 - MIR SINE MIR -146 116 7 1 1566 352 247 37 0 chr3 128626269 128626350 -30973433 + PB1D7 SINE Alu 1 84 -36 1 1566 448 221 31 21 chr3 128626502 128626599 -30973184 - B3A SINE B2 -100 98 1 1 1566 256 358 56 84 chr3 128627220 128627613 -30972170 + L2a LINE L2 3019 3400 -26 1 1566 504 0 0 0 chr3 128628038 128628094 -30971689 + (TG)n Simple_repeat Simple_repeat 2 57 0 1 1566 2215 59 9 50 chr3 128628317 128628636 -30971147 - L1_Mus2 LINE L1 0 6566 6261 1 1566 384 77 0 0 chr3 128629471 128629523 -30970260 + (CA)n Simple_repeat Simple_repeat 1 52 0 1 1566 241 136 30 0 chr3 128631255 128631321 -30968462 + A-rich Low_complexity Low_complexity 2 69 0 1 1566 379 268 163 53 chr3 128631376 128631585 -30968198 - Charlie1a DNA MER1_type -1196 259 28 1 1566 816 322 24 30 chr3 128631626 128631959 -30967824 + Charlie1a DNA MER1_type 452 782 -673 1 1566 399 359 82 21 chr3 128631990 128632272 -30967511 + MLT1E1A LTR MaLR 294 592 -88 1 1566 315 0 0 0 chr3 128632570 128632605 -30967178 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1 1566 426 211 0 26 chr3 128632605 128632683 -30967100 - B1_Mus2 SINE Alu -10 137 62 1 1566 542 288 15 8 chr3 128633038 128633171 -30966612 - B1F SINE Alu -3 146 13 1 1566 246 264 47 134 chr3 128633076 128633203 -30966580 - MT2B2 LTR ERVL -324 260 145 1 1566 1102 79 33 33 chr3 128633442 128633625 -30966158 - L1_Mus3 LINE L1 -6 6632 6450 1 1566 317 26 0 0 chr3 128633683 128633721 -30966062 + tRNA-Gly-GGA tRNA tRNA 1 38 -37 1 1566 322 328 51 8 chr3 128634491 128634608 -30965175 - B4A SINE B4 -7 285 164 1 1566 315 0 0 0 chr3 128634755 128634790 -30964993 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1 1566 408 164 0 0 chr3 128635078 128635188 -30964595 + (CTG)n Simple_repeat Simple_repeat 1 110 0 1 1566 201 245 0 19 chr3 128635190 128635244 -30964539 + (ATGGTG)n Simple_repeat Simple_repeat 6 58 0 1 1566 340 263 20 125 chr3 128636088 128636240 -30963543 + MIR SINE MIR 101 236 -26 1 1566 484 291 87 39 chr3 128636265 128636519 -30963264 + MIRb SINE MIR 1 266 -2 1 1566 7913 145 50 11 chr3 128636557 128637965 -30961818 - Lx4A LINE L1 0 7058 5596 1 1566 4197 130 3 4 chr3 128637955 128638651 -30961132 + Lx4A LINE L1 4883 5577 -300 1 1566 513 0 0 0 chr3 128638926 128638983 -30960800 + (TC)n Simple_repeat Simple_repeat 1 57 0 1 1566 801 40 0 0 chr3 128639625 128639726 -30960057 + (TTAGGG)n Simple_repeat Simple_repeat 1 101 0 1 1566 287 255 127 68 chr3 128639726 128639844 -30959939 + B1F SINE Alu 22 146 -3 1 1566 279 167 0 0 chr3 128639895 128639961 -30959822 + (TGG)n Simple_repeat Simple_repeat 1 66 0 1 1566 325 0 44 0 chr3 128640937 128640982 -30958801 + (CAAAAA)n Simple_repeat Simple_repeat 2 48 0 1 1566 23 0 0 0 chr3 128641876 128641899 -30957884 + AT_rich Low_complexity Low_complexity 1 23 0 2 1566 348 325 34 8 chr3 128643163 128643281 -30956502 - B4A SINE B4 -171 121 1 2 1566 207 267 0 0 chr3 128644016 128644091 -30955692 + (TATG)n Simple_repeat Simple_repeat 4 78 0 2 1566 1024 296 24 21 chr3 128644100 128644126 -30955657 - B4A SINE B4 0 292 268 2 1566 396 0 0 0 chr3 128644126 128644170 -30955613 + (TG)n Simple_repeat Simple_repeat 2 45 0 2 1566 1024 296 24 21 chr3 128644170 128644433 -30955350 - B4A SINE B4 -25 267 2 2 1566 21 36 0 0 chr3 128645073 128645101 -30954682 + AT_rich Low_complexity Low_complexity 1 28 0 2 1566 1060 92 0 0 chr3 128645198 128645340 -30954443 + B1_Mus2 SINE Alu 1 142 -5 2 1566 1137 128 0 0 chr3 128645375 128645555 -30954228 + (TTC)n Simple_repeat Simple_repeat 1 180 0 2 1566 305 250 275 18 chr3 128646342 128646509 -30953274 + MIR SINE MIR 7 216 -46 2 1566 726 96 0 0 chr3 128648404 128648508 -30951275 + (GAAAA)n Simple_repeat Simple_repeat 2 105 0 2 1566 306 0 0 0 chr3 128649169 128649203 -30950580 + (CACAG)n Simple_repeat Simple_repeat 5 38 0 2 1566 248 310 0 35 chr3 128650067 128650154 -30949629 + GA-rich Low_complexity Low_complexity 1 84 0 2 1566 215 329 40 0 chr3 128650348 128650424 -30949359 + MER5B DNA MER1_type 32 110 -68 2 1566 12510 68 7 5 chr3 128650594 128650955 -30948828 + L1Md_F2 LINE L1 3834 4195 -1688 2 1566 180 0 0 0 chr3 128650955 128650975 -30948808 + (TA)n Simple_repeat Simple_repeat 2 21 0 2 1566 12510 68 7 5 chr3 128650975 128652363 -30947420 + L1Md_F2 LINE L1 4196 5584 -299 2 1566 7713 61 5 15 chr3 128652363 128653367 -30946416 + L1Md_F2 LINE L1 5587 6580 -2 2 1566 550 311 27 114 chr3 128654336 128654712 -30945071 + MLT1A LTR MaLR 11 398 -10 2 1566 26 30 0 0 chr3 128655726 128655759 -30944024 + AT_rich Low_complexity Low_complexity 1 33 0 2 1566 266 309 10 41 chr3 128655772 128655870 -30943913 - MIR SINE MIR -96 166 72 2 1566 351 190 13 0 chr3 128656036 128656115 -30943668 + Lx4A LINE L1 6978 7057 -1 2 1566 25 0 0 0 chr3 128656291 128656316 -30943467 + AT_rich Low_complexity Low_complexity 1 25 0 2 1566 1225 34 7 7 chr3 128658187 128658335 -30941448 + B1_Mus1 SINE Alu 1 148 0 2 1566 33 25 0 0 chr3 128659148 128659188 -30940595 + AT_rich Low_complexity Low_complexity 1 40 0 2 1566 378 316 8 64 chr3 128659190 128659315 -30940468 - MER5A DNA MER1_type -59 130 13 2 1566 183 324 18 81 chr3 128659321 128659432 -30940351 + L2 LINE L2 2226 2329 -1090 2 1566 378 307 29 19 chr3 128659860 128659963 -30939820 - Charlie17a DNA MER1_type 0 219 116 2 1566 1163 307 84 47 chr3 128660669 128661421 -30938362 - Lx8 LINE L1 -1 7472 6693 2 1566 733 84 15 8 chr3 128662145 128662277 -30937506 + (TTTTG)n Simple_repeat Simple_repeat 3 135 0 2 1566 1013 30 86 29 chr3 128662295 128662434 -30937349 - B1_Mm SINE Alu 0 147 1 2 1566 207 0 0 0 chr3 128662574 128662597 -30937186 + (T)n Simple_repeat Simple_repeat 1 23 0 2 1566 26 50 0 0 chr3 128663117 128663157 -30936626 + AT_rich Low_complexity Low_complexity 1 40 0 2 1566 31648 11 2 6 chr3 128663513 128669710 -30930073 - L1Md_A LINE L1 -4 6578 412 2 1566 2217 317 68 20 chr3 128670091 128671027 -30928756 + Lx8 LINE L1 6355 7335 -138 2 1566 228 67 0 0 chr3 128671242 128671272 -30928511 + (CTG)n Simple_repeat Simple_repeat 3 32 0 2 1566 558 79 0 0 chr3 128672863 128672939 -30926844 + (GGA)n Simple_repeat Simple_repeat 3 78 0 2 1566 1040 222 14 0 chr3 128673578 128673785 -30925998 - B3 SINE B2 -5 211 2 2 1566 1593 200 45 45 chr3 128674154 128674531 -30925252 - ORR1C2 LTR MaLR -7 377 1 2 1566 448 309 131 50 chr3 128676571 128676731 -30923052 + B3A SINE B2 2 174 -24 2 1566 577 83 31 0 chr3 128676732 128676828 -30922955 + (GGGA)n Simple_repeat Simple_repeat 3 101 0 2 1566 440 294 33 16 chr3 128677123 128677244 -30922539 + RSINE1 SINE B4 3 125 -40 2 1566 821 197 196 0 chr3 128677385 128677564 -30922219 - B3 SINE B2 -1 215 2 2 1566 259 174 0 0 chr3 128677823 128677869 -30921914 + LTR88b LTR Gypsy? 14 59 -778 2 1566 249 140 59 20 chr3 128678162 128678213 -30921570 - RSINE1 SINE B4 -40 125 73 2 1566 261 319 11 11 chr3 128678232 128678327 -30921456 + MIRc SINE MIR 64 158 -110 2 1566 183 80 0 0 chr3 128678414 128678439 -30921344 + (TTA)n Simple_repeat Simple_repeat 3 27 0 2 1566 226 257 14 28 chr3 128678445 128678517 -30921266 + (TG)n Simple_repeat Simple_repeat 2 72 0 2 1566 814 260 105 8 chr3 128678536 128678784 -30920999 - B4A SINE B4 -20 272 1 2 1566 226 280 39 39 chr3 128679516 128679594 -30920189 - MamGypLTR3 LTR Gypsy -12 827 750 2 1566 409 226 157 0 chr3 128680000 128680102 -30919681 + B3A SINE B2 1 118 -80 2 1566 2118 251 93 46 chr3 128680100 128680726 -30919057 + MTE-int LTR MaLR 863 1517 -63 2 1566 745 306 74 74 chr3 128680717 128681056 -30918727 + ORR1D2 LTR MaLR 14 352 -18 2 1566 2328 153 45 15 chr3 128681034 128681433 -30918350 - MTC LTR MaLR -8 413 3 2 1566 279 0 0 0 chr3 128681433 128681464 -30918319 + (CACCAT)n Simple_repeat Simple_repeat 4 34 0 2 1566 399 68 0 0 chr3 128681596 128681655 -30918128 + (T)n Simple_repeat Simple_repeat 1 59 0 2 1566 1196 76 14 0 chr3 128681655 128681800 -30917983 - B1_Mus2 SINE Alu 0 147 1 2 1566 1426 180 50 19 chr3 128682895 128683217 -30916566 - Lx9 LINE L1 -1 7643 7312 2 1566 189 0 0 0 chr3 128683592 128683613 -30916170 + (TTTG)n Simple_repeat Simple_repeat 3 23 0 2 1566 549 0 0 0 chr3 128683877 128683938 -30915845 + (TAGA)n Simple_repeat Simple_repeat 2 62 0 2 1566 240 320 68 7 chr3 128684093 128684241 -30915542 - MER53 DNA hAT -26 167 11 2 1566 215 292 181 10 chr3 128684546 128684676 -30915107 - MIR SINE MIR -118 158 8 2 1566 1854 108 46 23 chr3 128684999 128685302 -30914481 - Lx LINE L1 -1 6653 6344 2 1566 251 381 11 101 chr3 128685335 128685513 -30914270 - RSINE1 SINE B4 -1 164 3 2 1566 227 54 0 26 chr3 128685522 128685560 -30914223 + (TTTA)n Simple_repeat Simple_repeat 3 39 0 2 1566 21 0 0 0 chr3 128685566 128685587 -30914196 + AT_rich Low_complexity Low_complexity 1 21 0 2 1566 230 353 87 35 chr3 128685759 128685932 -30913851 - MIRb SINE MIR -40 228 47 2 1566 189 0 0 0 chr3 128686614 128686635 -30913148 + (TTTTG)n Simple_repeat Simple_repeat 5 25 0 2 1566 270 0 0 0 chr3 128686669 128686699 -30913084 + (TG)n Simple_repeat Simple_repeat 1 30 0 2 1566 789 213 0 0 chr3 128686863 128687037 -30912746 + GA-rich Low_complexity Low_complexity 2 175 0 2 1566 307 315 0 35 chr3 128688284 128688399 -30911384 - MIR SINE MIR -36 226 116 2 1566 453 224 70 189 chr3 128688687 128688712 -30911071 + MTEa LTR MaLR 1 25 -354 2 1566 2451 73 32 0 chr3 128688712 128689026 -30910757 - L1_Mus1 LINE L1 0 6567 6244 2 1566 453 224 70 189 chr3 128689026 128689259 -30910524 + MTEa LTR MaLR 26 228 -151 2 1566 384 293 57 85 chr3 128689077 128689308 -30910475 + MLT2B5 LTR ERVL 67 291 -310 2 1566 471 18 0 0 chr3 128689308 128689364 -30910419 + (TG)n Simple_repeat Simple_repeat 2 57 0 2 1566 384 293 57 85 chr3 128689364 128689378 -30910405 + MLT2B5 LTR ERVL 292 305 -296 2 1566 413 321 43 0 chr3 128689703 128689865 -30909918 - MER5A DNA MER1_type -18 171 3 2 1566 521 278 138 6 chr3 128690684 128690858 -30908925 - MIR SINE MIR -4 258 62 2 1566 300 303 48 85 chr3 128691245 128691469 -30908314 + RSINE1 SINE B4 8 220 -72 2 1566 262 272 61 12 chr3 128691435 128691517 -30908266 + RSINE1 SINE B4 76 161 -4 2 1566 342 67 0 0 chr3 128693336 128693381 -30906402 + (CA)n Simple_repeat Simple_repeat 1 45 0 2 1566 333 82 0 0 chr3 128693953 128694002 -30905781 + (TC)n Simple_repeat Simple_repeat 2 50 0 2 1566 216 327 135 30 chr3 128695340 128695548 -30904235 - MIR SINE MIR -9 253 30 2 1566 405 0 0 0 chr3 128695569 128695614 -30904169 + (TC)n Simple_repeat Simple_repeat 1 45 0 2 1566 2903 88 21 43 chr3 128698636 128699054 -30900729 + L1Md_F2 LINE L1 6162 6570 -12 2 1566 277 362 24 48 chr3 128699203 128699371 -30900412 + MLT1I LTR MaLR 77 240 -171 2 1566 21 0 0 0 chr3 128699609 128699630 -30900153 + AT_rich Low_complexity Low_complexity 1 21 0 2 1566 225 352 36 18 chr3 128699665 128699830 -30899953 - MIR SINE MIR -15 247 80 2 1566 228 310 71 12 chr3 128699841 128699926 -30899857 - ORR1E LTR MaLR -1 358 269 2 1566 634 297 46 57 chr3 128700018 128700300 -30899483 + B4A SINE B4 2 280 -12 2 1566 6389 69 82 11 chr3 128700428 128701326 -30898457 - L1_Mus3 LINE L1 0 6638 5683 2 1566 3138 270 109 31 chr3 128701586 128702633 -30897150 - Lx8 LINE L1 -2 7471 6343 2 1566 2359 69 0 23 chr3 128702801 128703111 -30896672 + L1_Mus4 LINE L1 6326 6628 -8 2 1566 441 0 0 0 chr3 128703148 128703197 -30896586 + (TAA)n Simple_repeat Simple_repeat 3 51 0 2 1566 196 330 0 34 chr3 128703649 128703743 -30896040 - MIRc SINE MIR -38 170 81 2 1566 240 35 0 0 chr3 128704484 128704513 -30895270 + (TGG)n Simple_repeat Simple_repeat 3 31 0 2 1566 344 88 0 17 chr3 128704519 128704577 -30895206 + (TTG)n Simple_repeat Simple_repeat 2 58 0 2 1566 899 207 48 19 chr3 128706566 128706773 -30893010 - B3 SINE B2 0 216 4 2 1566 367 370 75 46 chr3 128707603 128707991 -30891792 - LTR16E2 LTR ERVL -13 555 157 2 1566 1455 227 32 15 chr3 128708615 128708939 -30890844 + MTD LTR MaLR 40 400 -19 2 1566 378 0 0 0 chr3 128710598 128710640 -30889143 + (CA)n Simple_repeat Simple_repeat 1 42 0 2 1566 262 344 0 20 chr3 128710644 128710742 -30889041 + CT-rich Low_complexity Low_complexity 5 100 0 2 1566 531 0 0 0 chr3 128710760 128710819 -30888964 + (TG)n Simple_repeat Simple_repeat 2 60 0 2 1566 23 54 0 0 chr3 128711155 128711192 -30888591 + AT_rich Low_complexity Low_complexity 1 37 0 2 1566 1252 55 0 0 chr3 128711803 128711949 -30887834 + B1_Mus2 SINE Alu 2 147 0 3 1566 360 111 0 0 chr3 128711949 128712003 -30887780 + (A)n Simple_repeat Simple_repeat 1 54 0 3 1566 704 271 169 8 chr3 128712134 128712376 -30887407 - B4 SINE B4 -11 281 1 3 1567 463 269 138 0 chr3 128712838 128712994 -30886789 + MTEb LTR MaLR 1 176 -203 3 1567 459 167 0 0 chr3 128712996 128713110 -30886673 + GA-rich Low_complexity Low_complexity 1 114 0 3 1567 849 223 31 26 chr3 128713110 128713303 -30886480 + MTEb LTR MaLR 186 379 0 3 1567 758 138 8 8 chr3 128713343 128713474 -30886309 + Lx2 LINE L1 6867 6997 0 3 1567 429 307 49 28 chr3 128713890 128714034 -30885749 - RSINE1 SINE B4 -15 150 4 3 1567 438 69 0 0 chr3 128714231 128714289 -30885494 + (ATTG)n Simple_repeat Simple_repeat 2 59 0 3 1567 2178 279 35 25 chr3 128714291 128714332 -30885451 - Lx5 LINE L1 -20 7030 6990 3 1567 369 0 0 0 chr3 128714332 128714373 -30885410 + (CA)n Simple_repeat Simple_repeat 1 41 0 3 1567 2178 251 34 16 chr3 128714373 128715000 -30884783 - Lx5 LINE L1 -61 6989 6456 3 1567 284 159 0 0 chr3 128715002 128715046 -30884737 + Lx5 LINE L1 6374 6417 -633 3 1567 3348 151 62 9 chr3 128715846 128716270 -30883513 + RMER1A Other Other 430 877 -153 3 1567 243 0 0 0 chr3 128716270 128716297 -30883486 + (TTG)n Simple_repeat Simple_repeat 3 29 0 3 1567 3348 151 62 9 chr3 128716297 128716441 -30883342 + RMER1A Other Other 878 1027 -3 3 1567 2244 200 64 27 chr3 128717778 128718293 -30881490 + Lx6 LINE L1 6746 7547 -149 3 1567 310 288 65 35 chr3 128718344 128718513 -30881270 + Lx7 LINE L1 7193 7366 -330 3 1567 43 47 0 0 chr3 128718645 128718709 -30881074 + AT_rich Low_complexity Low_complexity 1 64 0 3 1567 319 352 33 22 chr3 128719026 128719206 -30880577 - MIRb SINE MIR -27 241 60 3 1567 2166 104 22 0 chr3 128719297 128719615 -30880168 - IAPEY2_LTR LTR ERVK 0 357 33 3 1567 454 138 18 27 chr3 128719650 128719762 -30880021 + (TAGA)n Simple_repeat Simple_repeat 4 114 0 3 1567 424 287 46 8 chr3 128719861 128719991 -30879792 - MER115 DNA Tip100 -17 676 542 3 1567 301 27 0 0 chr3 128719987 128720024 -30879759 - tRNA-Gln-CAA tRNA tRNA -37 38 2 3 1567 228 238 0 0 chr3 128720024 128720087 -30879696 + (CA)n Simple_repeat Simple_repeat 2 64 0 3 1567 841 196 0 0 chr3 128720298 128720436 -30879347 + B1_Mur2 SINE Alu 1 138 -11 3 1567 5415 58 0 0 chr3 128720518 128721150 -30878633 + L1Md_T LINE L1 5950 6581 -1 3 1567 241 200 100 0 chr3 128721163 128721223 -30878560 + Lx8 LINE L1 7404 7469 -4 3 1567 201 39 0 0 chr3 128721545 128721571 -30878212 + (CAAAAA)n Simple_repeat Simple_repeat 3 28 0 3 1567 32199 75 28 2 chr3 128721620 128724557 -30875226 + L1Md_F2 LINE L1 546 3597 -2286 3 1567 3658 33 0 0 chr3 128724557 128724953 -30874830 - MTA_Mm LTR MaLR 0 396 1 3 1567 32199 73 20 3 chr3 128724953 128726942 -30872841 + L1Md_F2 LINE L1 3598 5586 -297 3 1567 8250 60 1 3 chr3 128726942 128727921 -30871862 + L1Md_F2 LINE L1 5587 6563 -19 3 1567 36064 57 1 4 chr3 128727960 128734047 -30865736 + L1Md_T LINE L1 1 5589 -297 3 1567 9137 27 0 0 chr3 128734047 128735043 -30864740 + L1Md_T LINE L1 5590 6585 0 3 1567 1691 108 73 69 chr3 128738287 128738604 -30861179 + ORR1A3 LTR MaLR 1 318 -8 3 1567 337 379 57 84 chr3 128738649 128738832 -30860951 + B4A SINE B4 27 194 -98 3 1567 225 0 0 0 chr3 128738832 128738857 -30860926 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 3 1567 337 319 10 50 chr3 128738857 128738968 -30860815 + B4A SINE B4 78 281 -11 3 1567 1189 82 7 0 chr3 128739541 128739687 -30860096 + B1_Mus1 SINE Alu 2 148 0 3 1567 463 299 10 0 chr3 128740575 128740672 -30859111 + RSINE1 SINE B4 56 153 -12 3 1567 806 272 33 47 chr3 128742759 128743060 -30856723 + L1M3 LINE L1 3875 4171 -1969 3 1567 289 254 74 67 chr3 128743064 128743199 -30856584 + Lx9 LINE L1 7304 7439 -205 3 1567 525 323 99 19 chr3 128743355 128743730 -30856053 + Lx8 LINE L1 6933 7337 -136 3 1567 812 142 7 29 chr3 128744084 128744222 -30855561 - Lx7 LINE L1 0 7696 7562 3 1567 4631 41 5 27 chr3 128744210 128744765 -30855018 + L1Md_F2 LINE L1 6028 6570 -12 3 1567 25 51 0 0 chr3 128744882 128744921 -30854862 + AT_rich Low_complexity Low_complexity 1 39 0 3 1567 868 216 180 39 chr3 128744921 128745254 -30854529 - Lx7 LINE L1 -122 7574 7195 3 1567 1657 192 81 31 chr3 128745266 128745686 -30854097 - Lx7 LINE L1 -1561 6135 5695 3 1567 2785 157 91 115 chr3 128745912 128746618 -30853165 + RMER6C LTR ERVK 2 690 0 3 1567 590 257 0 46 chr3 128746620 128746771 -30853012 - B4A SINE B4 -148 144 1 3 1567 800 291 14 14 chr3 128748088 128748304 -30851479 + B3 SINE B2 1 216 0 3 1567 995 0 9 0 chr3 128748305 128748420 -30851363 + (TAGA)n Simple_repeat Simple_repeat 3 118 0 3 1567 198 0 0 0 chr3 128749046 128749068 -30850715 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 3 1567 482 247 78 73 chr3 128749410 128749432 -30850351 - B2_Mm2 SINE B2 -1 194 173 3 1567 324 83 0 0 chr3 128749432 128749480 -30850303 + (TTCA)n Simple_repeat Simple_repeat 1 48 0 3 1567 504 0 0 0 chr3 128749480 128749536 -30850247 + (TG)n Simple_repeat Simple_repeat 2 57 0 3 1567 732 221 60 30 chr3 128749536 128749704 -30850079 - B3A SINE B2 -24 174 2 3 1567 429 278 17 25 chr3 128749973 128750091 -30849692 + PB1D10 SINE Alu 1 117 0 3 1567 205 179 0 25 chr3 128750283 128750323 -30849460 + GA-rich Low_complexity Low_complexity 1 39 0 3 1567 1146 112 0 0 chr3 128750607 128750785 -30848998 + (TTGG)n Simple_repeat Simple_repeat 3 180 0 3 1567 242 267 115 39 chr3 128750796 128750874 -30848909 - ID_B1 SINE B4 -9 215 132 3 1567 26 98 0 0 chr3 128751470 128751552 -30848231 + AT_rich Low_complexity Low_complexity 1 82 0 3 1567 21 71 0 0 chr3 128751587 128751629 -30848154 + AT_rich Low_complexity Low_complexity 1 42 0 3 1567 2886 204 30 44 chr3 128751815 128752474 -30847309 - L1_Mur2 LINE L1 -5873 858 221 3 1567 400 238 31 50 chr3 128752485 128752644 -30847139 - CYRA11_Mm Unknown Y-chromosome -290 327 172 3 1567 809 140 0 29 chr3 128752505 128752645 -30847138 + URR1B DNA MER1_type 90 225 0 3 1567 1513 231 18 84 chr3 128753685 128753876 -30845907 + ORR1D2 LTR MaLR 1 183 -187 3 1567 850 121 0 20 chr3 128753876 128754028 -30845755 - L1_Mus4 LINE L1 0 6636 6488 3 1567 1513 231 18 84 chr3 128754028 128754219 -30845564 + ORR1D2 LTR MaLR 184 358 -12 3 1567 1686 198 96 3 chr3 128754224 128754589 -30845194 + ORR1D2-int LTR MaLR 2 400 -970 3 1567 1374 212 19 56 chr3 128754586 128754663 -30845120 + ORR1D2-int LTR MaLR 1059 1131 -239 3 1567 2577 134 62 10 chr3 128754663 128755063 -30844720 + MTC LTR MaLR 1 421 0 3 1567 1374 212 19 56 chr3 128755063 128755309 -30844474 + ORR1D2-int LTR MaLR 1132 1370 0 3 1567 1325 199 179 6 chr3 128755309 128755628 -30844155 + ORR1D2 LTR MaLR 1 374 0 3 1567 263 203 169 15 chr3 128756216 128756281 -30843502 - MLT1M LTR MaLR -487 185 111 3 1567 277 330 254 10 chr3 128756413 128756618 -30843165 - MIRb SINE MIR -10 258 1 3 1567 459 0 0 0 chr3 128757857 128757908 -30841875 + (TA)n Simple_repeat Simple_repeat 2 52 0 3 1567 252 265 0 0 chr3 128757947 128757996 -30841787 - ID4_ SINE ID -1 82 34 3 1567 423 0 0 0 chr3 128758603 128758650 -30841133 + (TG)n Simple_repeat Simple_repeat 2 48 0 3 1567 843 310 50 25 chr3 128758678 128758956 -30840827 - B4A SINE B4 -2 290 6 3 1567 205 182 0 0 chr3 128759625 128759658 -30840125 + (TTG)n Simple_repeat Simple_repeat 1 33 0 3 1567 3208 29 0 0 chr3 128759992 128760338 -30839445 + ORR1A0 LTR MaLR 1 346 0 3 1567 14898 53 10 1 chr3 128760338 128762113 -30837670 + ORR1A0-int LTR MaLR 1 1792 0 3 1567 3233 23 0 0 chr3 128762113 128762459 -30837324 + ORR1A0 LTR MaLR 1 346 0 3 1567 213 231 0 0 chr3 128763477 128763516 -30836267 + polypurine Low_complexity Low_complexity 4 42 0 3 1567 984 164 0 0 chr3 128763517 128763694 -30836089 + GA-rich Low_complexity Low_complexity 4 180 0 3 1567 237 128 0 0 chr3 128763720 128763767 -30836016 + (TCTG)n Simple_repeat Simple_repeat 4 50 0 3 1567 337 270 41 41 chr3 128763807 128763966 -30835817 - L1MC4 LINE L1 -105 7890 7709 3 1567 405 0 0 0 chr3 128763966 128764011 -30835772 + (TG)n Simple_repeat Simple_repeat 2 46 0 3 1567 230 216 323 60 chr3 128764020 128764046 -30835737 - B4A SINE B4 -123 169 2 3 1567 563 142 168 9 chr3 128764046 128764153 -30835630 - B3A SINE B2 -73 125 2 3 1567 270 0 0 0 chr3 128764378 128764408 -30835375 + (CAAA)n Simple_repeat Simple_repeat 3 32 0 3 1567 710 271 50 112 chr3 128764438 128764684 -30835099 + B4 SINE B4 32 267 -25 3 1567 324 0 0 0 chr3 128764684 128764720 -30835063 + (CA)n Simple_repeat Simple_repeat 1 36 0 3 1567 710 271 50 112 chr3 128764720 128764751 -30835032 + B4 SINE B4 268 292 0 3 1567 254 29 29 0 chr3 128764760 128764795 -30834988 + (CAAAA)n Simple_repeat Simple_repeat 4 39 0 3 1567 203 313 14 29 chr3 128764885 128764954 -30834829 + L2b LINE L2 2967 3034 -341 3 1567 247 365 34 17 chr3 128765267 128765384 -30834399 + B1F SINE Alu 7 125 -24 3 1567 360 0 0 0 chr3 128765385 128765425 -30834358 + (TC)n Simple_repeat Simple_repeat 1 40 0 3 1567 512 291 32 64 chr3 128765476 128765663 -30834120 - B3A SINE B2 -16 182 2 3 1567 465 266 6 54 chr3 128765691 128765858 -30833925 - L1MB3 LINE L1 -43 6140 5982 3 1567 231 272 24 12 chr3 128766058 128766140 -30833643 + CT-rich Low_complexity Low_complexity 2 84 0 3 1567 531 56 0 0 chr3 128766161 128766232 -30833551 + (TC)n Simple_repeat Simple_repeat 2 72 0 3 1567 900 192 77 47 chr3 128766277 128766512 -30833271 - L1MB3 LINE L1 -486 5685 5444 3 1567 477 0 0 0 chr3 128770024 128770077 -30829706 + (TG)n Simple_repeat Simple_repeat 2 54 0 3 1567 413 233 9 0 chr3 128770616 128770732 -30829051 + (TA)n Simple_repeat Simple_repeat 2 118 0 3 1567 394 184 0 75 chr3 128773502 128773596 -30826187 + LFSINE_Vert SINE SINE 199 285 -174 3 1567 270 0 0 0 chr3 128773777 128773807 -30825976 + (TGGGGG)n Simple_repeat Simple_repeat 1 30 0 3 1567 1422 33 0 0 chr3 128774400 128774580 -30825203 + (GGAGA)n Simple_repeat Simple_repeat 1 180 0 3 1567 702 0 0 0 chr3 128774581 128774659 -30825124 + (CAGAG)n Simple_repeat Simple_repeat 1 78 0 3 1567 369 361 26 6 chr3 128776380 128776536 -30823247 - MIR3 SINE MIR -1 207 49 3 1567 216 0 0 0 chr3 128776682 128776706 -30823077 + (TAAA)n Simple_repeat Simple_repeat 3 26 0 3 1567 2199 158 38 8 chr3 128776974 128777370 -30822413 - MTC LTR MaLR -8 413 6 3 1567 321 211 178 0 chr3 128777485 128777575 -30822208 + B1_Mur2 SINE Alu 43 148 -1 3 1567 243 234 47 0 chr3 128777583 128777647 -30822136 + GA-rich Low_complexity Low_complexity 3 69 0 3 1567 245 307 39 109 chr3 128777658 128777786 -30821997 + MER20 DNA MER1_type 58 176 -43 3 1567 273 128 0 0 chr3 128777787 128777826 -30821957 + U2 snRNA snRNA 1 39 -149 3 1567 263 360 94 50 chr3 128778345 128778526 -30821257 - MER5A DNA MER1_type 0 189 1 4 1567 206 317 0 0 chr3 128778531 128778591 -30821192 - MER5B DNA MER1_type -24 154 95 4 1567 225 281 204 28 chr3 128778707 128778883 -30820900 + L2c LINE L2 2936 3142 -245 4 1567 372 183 24 0 chr3 128780127 128780209 -30819574 + Lx2B LINE L1 6914 6997 -3 4 1567 348 24 0 0 chr3 128780623 128780664 -30819119 + (CAA)n Simple_repeat Simple_repeat 2 42 0 4 1567 23 54 0 0 chr3 128780883 128780920 -30818863 + AT_rich Low_complexity Low_complexity 1 37 0 4 1567 748 282 107 4 chr3 128782541 128782822 -30816961 + Lx7 LINE L1 6636 6945 -751 4 1567 360 308 55 20 chr3 128783579 128783725 -30816058 + L1M5 LINE L1 4979 5129 -1017 4 1567 607 224 0 58 chr3 128783812 128783968 -30815815 + B1_Mur4 SINE Alu 4 150 0 4 1567 2129 108 9 69 chr3 128784369 128784716 -30815067 + ORR1A3 LTR MaLR 1 326 0 4 1567 706 318 35 28 chr3 128784892 128785180 -30814603 + B4A SINE B4 3 292 0 4 1567 274 230 0 29 chr3 128785181 128785284 -30814499 + (CATA)n Simple_repeat Simple_repeat 4 103 0 4 1567 289 179 65 9 chr3 128785292 128785399 -30814384 + (TA)n Simple_repeat Simple_repeat 2 114 0 4 1567 501 356 75 81 chr3 128786025 128786383 -30813400 + ORR1E LTR MaLR 4 359 0 4 1567 1867 177 78 25 chr3 128787154 128787554 -30812229 - MTC LTR MaLR 0 421 1 4 1567 494 235 125 135 chr3 128787633 128787825 -30811958 + B3 SINE B2 1 190 -5 4 1567 210 37 0 0 chr3 128788335 128788362 -30811421 + (TAAA)n Simple_repeat Simple_repeat 1 27 0 4 1567 285 237 20 88 chr3 128789907 128790009 -30809774 - MLT1B LTR MaLR 0 467 373 4 1567 923 126 0 0 chr3 128789970 128790105 -30809678 + B1_Mur3 SINE Alu 13 147 -2 4 1567 244 188 0 30 chr3 128790141 128790207 -30809576 + GA-rich Low_complexity Low_complexity 3 66 0 4 1567 538 272 144 91 chr3 128790210 128790529 -30809254 - MLT1B LTR MaLR -54 336 1 4 1567 402 266 10 30 chr3 128790573 128790692 -30809091 + B1F1 SINE Alu 3 119 -1 4 1567 506 223 0 19 chr3 128790745 128790850 -30808933 + ORR1D2 LTR MaLR 7 109 -310 4 1567 21 0 0 0 chr3 128790937 128790958 -30808825 + AT_rich Low_complexity Low_complexity 1 21 0 4 1567 213 39 0 0 chr3 128793220 128793246 -30806537 + (T)n Simple_repeat Simple_repeat 1 26 0 4 1567 1223 34 0 7 chr3 128793248 128793395 -30806388 - B1_Mm SINE Alu -1 146 1 4 1567 1429 59 5 0 chr3 128793752 128793938 -30805845 - L1_Mus1 LINE L1 0 6567 6381 4 1567 181 244 24 0 chr3 128793938 128793979 -30805804 - MIRm SINE MIR -142 134 93 4 1567 256 194 45 0 chr3 128793991 128794058 -30805725 + RMER17C LTR ERVK 206 275 -135 4 1567 27 0 0 0 chr3 128794058 128794085 -30805698 + AT_rich Low_complexity Low_complexity 1 27 0 4 1567 919 228 92 9 chr3 128794085 128794302 -30805481 + ORR1D2 LTR MaLR 136 370 0 4 1567 283 349 24 0 chr3 128794368 128794451 -30805332 + MER45C DNA Tip100 13 97 -856 4 1567 28 48 0 0 chr3 128795143 128795185 -30804598 + AT_rich Low_complexity Low_complexity 1 42 0 4 1567 344 361 23 8 chr3 128795936 128796067 -30803716 - RSINE1 SINE B4 -31 134 2 4 1567 1409 66 0 0 chr3 128796067 128796240 -30803543 - BGLII_Mus LTR ERVK -249 173 1 4 1567 924 138 7 0 chr3 128797244 128797389 -30802394 - B1_Mus1 SINE Alu 0 148 3 4 1567 237 301 57 28 chr3 128797709 128797815 -30801968 - L1M5 LINE L1 -1253 4893 4785 4 1567 257 280 26 17 chr3 128797925 128798042 -30801741 - L1MC LINE L1 -1529 4611 4494 4 1567 718 299 69 23 chr3 128798522 128798871 -30800912 - MLT1A0 LTR MaLR 0 365 1 4 1567 601 173 29 0 chr3 128799682 128799786 -30799997 + B1_Mur2 SINE Alu 30 136 -13 4 1567 396 88 0 0 chr3 128799786 128799843 -30799940 + (CAA)n Simple_repeat Simple_repeat 1 57 0 4 1567 2465 184 29 131 chr3 128800020 128800700 -30799083 - RMER19C LTR ERVK 0 611 1 4 1567 22 0 0 0 chr3 128800778 128800800 -30798983 + AT_rich Low_complexity Low_complexity 1 22 0 4 1567 1219 49 0 0 chr3 128801462 128801605 -30798178 + B1_Mus1 SINE Alu 1 143 -5 4 1567 493 228 27 72 chr3 128801855 128802118 -30797665 - RMER4B LTR ERVK 0 585 333 4 1567 327 255 0 0 chr3 128802137 128802243 -30797540 + GA-rich Low_complexity Low_complexity 2 107 0 4 1567 610 203 145 132 chr3 128802279 128802506 -30797277 - RMER4B LTR ERVK -339 246 17 4 1567 527 273 186 0 chr3 128802550 128802744 -30797039 + L2a LINE L2 3196 3425 -1 4 1567 288 284 30 0 chr3 128803540 128803607 -30796176 + MIRb SINE MIR 9 77 -191 4 1567 240 290 139 23 chr3 128803702 128803835 -30795948 - MIRc SINE MIR -106 162 6 4 1567 902 107 11 112 chr3 128805270 128805449 -30794334 + Lx4A LINE L1 6785 6945 -113 4 1567 266 289 26 26 chr3 128805811 128805889 -30793894 + ID2 SINE ID 3 80 -3 4 1567 813 87 0 0 chr3 128805891 128806006 -30793777 + (GGAGA)n Simple_repeat Simple_repeat 3 117 0 4 1567 213 39 0 0 chr3 128807477 128807503 -30792280 + (C)n Simple_repeat Simple_repeat 1 26 0 4 1567 278 318 81 81 chr3 128808989 128809150 -30790633 + MTEb LTR MaLR 36 196 -163 4 1567 192 97 0 0 chr3 128809159 128809190 -30790593 + (TCTCTG)n Simple_repeat Simple_repeat 2 32 0 4 1567 304 245 21 21 chr3 128809192 128809288 -30790495 + (CA)n Simple_repeat Simple_repeat 2 97 0 4 1567 311 221 28 104 chr3 128809380 128809486 -30790297 + MTEb LTR MaLR 282 379 0 4 1567 2004 219 41 20 chr3 128809757 128810246 -30789537 + Lx7 LINE L1 6868 7366 -330 4 1567 275 200 15 0 chr3 128810350 128810415 -30789368 + Lx7 LINE L1 7615 7680 -16 4 1567 626 202 0 0 chr3 128810661 128810765 -30789018 + B1_Mur4 SINE Alu 45 148 -2 4 1567 435 83 0 0 chr3 128810766 128810826 -30788957 + (ATG)n Simple_repeat Simple_repeat 2 61 0 4 1567 745 297 151 17 chr3 128810828 128811411 -30788372 + L1MC LINE L1 3258 3918 -2228 4 1567 1294 151 19 14 chr3 128811416 128811625 -30788158 + B3 SINE B2 1 210 -6 4 1567 413 265 63 49 chr3 128811698 128811841 -30787942 + RSINE1 SINE B4 21 165 0 4 1567 289 261 0 137 chr3 128811872 128811891 -30787892 + MT2B LTR ERVL 153 157 -444 4 1567 613 252 0 0 chr3 128811891 128812006 -30787777 + B1_Mur2 SINE Alu 3 117 -32 4 1567 398 333 5 70 chr3 128811964 128812151 -30787632 - B4A SINE B4 -117 175 1 4 1567 314 312 60 83 chr3 128812974 128813142 -30786641 + RSINE1 SINE B4 2 165 0 4 1567 270 73 0 0 chr3 128813148 128813189 -30786594 + (CATA)n Simple_repeat Simple_repeat 2 42 0 4 1567 1254 45 0 0 chr3 128813205 128813362 -30786421 + (GAAA)n Simple_repeat Simple_repeat 3 159 0 4 1567 585 288 140 14 chr3 128814831 128815053 -30784730 + RMER15 LTR ERVL 292 541 -34 4 1567 604 179 13 0 chr3 128815053 128815209 -30784574 + (TG)n Simple_repeat Simple_repeat 2 159 0 4 1567 709 278 105 73 chr3 128815222 128815549 -30784234 + MLT1A0 LTR MaLR 35 365 0 4 1567 799 35 259 0 chr3 128817138 128817254 -30782529 + B1_Mm SINE Alu 2 147 0 4 1567 491 358 50 28 chr3 128817585 128817867 -30781916 - MLT1J LTR MaLR -2 510 223 4 1567 432 0 0 0 chr3 128817984 128818032 -30781751 + (CA)n Simple_repeat Simple_repeat 1 48 0 4 1567 839 118 7 0 chr3 128818131 128818266 -30781517 + (GA)n Simple_repeat Simple_repeat 1 136 0 4 1567 440 35 17 0 chr3 128819257 128819315 -30780468 + (TG)n Simple_repeat Simple_repeat 1 59 0 4 1567 595 321 53 11 chr3 128820071 128820442 -30779341 + Lx7 LINE L1 6546 6940 -533 4 1567 278 301 44 97 chr3 128821100 128821214 -30778569 + MTEb LTR MaLR 1 108 -271 4 1567 1011 308 83 36 chr3 128821212 128821708 -30778075 - MT2A LTR ERVL -11 522 4 4 1567 533 253 130 123 chr3 128821712 128821973 -30777810 + MTEb LTR MaLR 115 377 -2 4 1567 837 269 124 8 chr3 128821991 128822257 -30777526 - MTD LTR MaLR -19 400 104 4 1567 285 383 12 0 chr3 128822262 128822424 -30777359 + Lx7 LINE L1 7164 7327 -146 4 1567 381 58 0 0 chr3 128822424 128822476 -30777307 + (TG)n Simple_repeat Simple_repeat 2 53 0 4 1567 1038 60 0 0 chr3 128822493 128822627 -30777156 + (TCTCCC)n Simple_repeat Simple_repeat 6 139 0 4 1567 671 234 102 11 chr3 128822831 128823095 -30776688 + L1M2 LINE L1 5521 5808 -492 4 1567 1634 93 16 0 chr3 128823098 128823345 -30776438 + Lx4A LINE L1 6535 6785 -273 4 1567 29 0 0 0 chr3 128823354 128823383 -30776400 + AT_rich Low_complexity Low_complexity 1 29 0 4 1567 28161 67 3 3 chr3 128823385 128827092 -30772691 + L1Md_F2 LINE L1 1672 5386 -497 4 1567 1994 101 12 51 chr3 128827092 128827427 -30772356 - RLTRETN_Mm LTR ERVK 0 322 1 4 1567 28161 67 3 3 chr3 128827427 128827633 -30772150 + L1Md_F2 LINE L1 5387 5586 -297 4 1567 7844 62 0 2 chr3 128827634 128828630 -30771153 + L1Md_F2 LINE L1 5588 6581 -1 4 1567 1307 67 17 0 chr3 128828825 128829004 -30770779 + L1Md_F2 LINE L1 6400 6581 -1 4 1567 4825 55 14 14 chr3 128828990 128829617 -30770166 + L1_Mus1 LINE L1 5940 6566 -1 4 1567 21 0 0 0 chr3 128830154 128830175 -30769608 + AT_rich Low_complexity Low_complexity 1 21 0 4 1567 1116 102 0 0 chr3 128830176 128830323 -30769460 + B1_Mm SINE Alu 1 147 0 4 1567 743 123 8 0 chr3 128830323 128830445 -30769338 + (GGAA)n Simple_repeat Simple_repeat 2 124 0 4 1567 33 73 0 0 chr3 128830937 128831005 -30768778 + AT_rich Low_complexity Low_complexity 1 68 0 4 1567 571 281 42 21 chr3 128831038 128831180 -30768603 - RSINE1 SINE B4 -19 146 2 4 1567 370 294 0 10 chr3 128831269 128831372 -30768411 - L3 LINE CR1 -624 3865 3764 4 1567 556 223 151 0 chr3 128832015 128832154 -30767629 + RSINE1 SINE B4 3 162 -3 4 1567 396 0 0 0 chr3 128832215 128832259 -30767524 + (GGAA)n Simple_repeat Simple_repeat 3 46 0 4 1567 287 306 38 75 chr3 128832791 128832897 -30766886 + B4A SINE B4 186 287 -5 4 1567 600 228 29 14 chr3 128833706 128833844 -30765939 + B1F SINE Alu 4 143 -6 4 1567 189 0 0 0 chr3 128834348 128834369 -30765414 + (T)n Simple_repeat Simple_repeat 1 21 0 4 1567 507 33 0 0 chr3 128834727 128834788 -30764995 + (TA)n Simple_repeat Simple_repeat 1 61 0 4 1567 278 235 25 0 chr3 128835733 128835814 -30763969 + MER63D DNA AcHobo 85 167 -894 4 1567 405 267 29 0 chr3 128835893 128835998 -30763785 - PB1D10 SINE Alu -7 110 3 5 1567 414 245 72 117 chr3 128836504 128836684 -30763099 + L1MC3 LINE L1 6763 6934 -851 5 1567 213 39 0 0 chr3 128836686 128836712 -30763071 + (TAA)n Simple_repeat Simple_repeat 2 27 0 5 1567 225 321 27 27 chr3 128836825 128836937 -30762846 + L1MC3 LINE L1 7114 7225 -560 5 1567 393 299 78 39 chr3 128837090 128837295 -30762488 - MLT1A0 LTR MaLR -2 363 151 5 1567 251 304 26 46 chr3 128837444 128837596 -30762187 + L1MD3 LINE L1 7833 7981 -14 5 1567 390 285 59 29 chr3 128839304 128839474 -30760309 - Lx8 LINE L1 -514 6959 6785 5 1567 416 321 35 14 chr3 128839497 128839639 -30760144 + MTE2b LTR MaLR 1 145 -234 5 1567 315 203 0 0 chr3 128839626 128839690 -30760093 + MTE2b LTR MaLR 311 374 -5 5 1567 499 202 92 0 chr3 128839696 128839815 -30759968 + B1_Mur4 SINE Alu 21 150 0 5 1567 226 73 0 47 chr3 128839815 128839858 -30759925 + (TAAA)n Simple_repeat Simple_repeat 1 41 0 5 1567 260 295 42 51 chr3 128839871 128839989 -30759794 + MT2A LTR ERVL 1 117 -416 5 1567 769 223 168 21 chr3 128839890 128840128 -30759655 + MTD LTR MaLR 18 290 -129 5 1567 307 311 52 7 chr3 128840218 128840354 -30759429 + MTD LTR MaLR 276 417 -2 5 1567 227 288 0 0 chr3 128841520 128841579 -30758204 - ZP3AR Satellite Satellite -131 81 23 5 1567 804 200 14 0 chr3 128842377 128842522 -30757261 + B1_Mus1 SINE Alu 1 147 -1 5 1567 968 146 0 6 chr3 128842522 128842701 -30757082 + GA-rich Low_complexity Low_complexity 3 180 0 5 1567 453 76 0 0 chr3 128842709 128842775 -30757008 + (GGAA)n Simple_repeat Simple_repeat 1 66 0 5 1567 963 144 0 0 chr3 128842795 128842962 -30756821 + (GGAA)n Simple_repeat Simple_repeat 2 168 0 5 1567 315 281 57 84 chr3 128843589 128843753 -30756030 - B3A SINE B2 -6 210 53 5 1568 248 356 56 22 chr3 128845405 128845583 -30754200 - MER20 DNA MER1_type -14 205 22 5 1568 239 271 118 59 chr3 128846061 128846265 -30753518 - L2a LINE L2 -14 3412 3197 5 1568 704 252 7 0 chr3 128846414 128846561 -30753222 - RSINE1 SINE B4 -2 163 16 5 1568 232 300 44 4 chr3 128846919 128847031 -30752752 - B1F SINE Alu 0 120 4 5 1568 1437 249 41 9 chr3 128847479 128847543 -30752240 - Lx6 LINE L1 0 7460 7390 5 1568 240 35 0 0 chr3 128847543 128847572 -30752211 + (CACCC)n Simple_repeat Simple_repeat 3 31 0 5 1568 1437 249 41 9 chr3 128847572 128847852 -30751931 - Lx6 LINE L1 -71 7389 7106 5 1568 21 0 0 0 chr3 128847877 128847898 -30751885 + AT_rich Low_complexity Low_complexity 1 21 0 5 1568 543 277 110 38 chr3 128847977 128848332 -30751451 - L1MA7 LINE L1 -280 6011 5583 5 1568 28 0 0 0 chr3 128848372 128848400 -30751383 + AT_rich Low_complexity Low_complexity 1 28 0 5 1568 1847 151 16 3 chr3 128848400 128848706 -30751077 - Lx LINE L1 -10 6644 6335 5 1568 22 0 0 0 chr3 128849024 128849046 -30750737 + AT_rich Low_complexity Low_complexity 1 22 0 5 1568 233 327 90 9 chr3 128849052 128849163 -30750620 + PB1D7 SINE Alu 1 120 0 5 1568 297 289 0 0 chr3 128849202 128849278 -30750505 + PB1D10 SINE Alu 1 76 -41 5 1568 586 235 174 27 chr3 128849278 128849462 -30750321 + B3 SINE B2 1 211 -5 5 1568 225 65 0 0 chr3 128849544 128849575 -30750208 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 5 1568 329 328 80 6 chr3 128849760 128849935 -30749848 - MER21B LTR ERV1 -72 791 604 5 1568 1254 27 7 0 chr3 128850116 128850262 -30749521 + B1_Mm SINE Alu 1 147 0 5 1568 294 95 0 0 chr3 128850390 128850432 -30749351 + (A)n Simple_repeat Simple_repeat 1 42 0 5 1568 441 0 0 0 chr3 128851294 128851343 -30748440 + (TG)n Simple_repeat Simple_repeat 2 50 0 5 1568 294 173 0 0 chr3 128852464 128852539 -30747244 + (CAGAGA)n Simple_repeat Simple_repeat 4 78 0 5 1568 221 83 0 27 chr3 128852633 128852670 -30747113 + (TTTC)n Simple_repeat Simple_repeat 1 36 0 5 1568 359 246 52 52 chr3 128852670 128852786 -30746997 - PB1D10 SINE Alu -1 116 1 5 1568 320 317 89 48 chr3 128852929 128853075 -30746708 - LTR33A_ LTR ERVL -347 184 33 5 1568 515 29 0 14 chr3 128855693 128855763 -30744020 + (TTGG)n Simple_repeat Simple_repeat 3 71 0 5 1568 228 67 0 0 chr3 128856776 128856806 -30742977 + (A)n Simple_repeat Simple_repeat 1 30 0 5 1568 423 204 22 11 chr3 128858544 128858633 -30741150 + B4A SINE B4 9 98 -194 5 1568 1945 264 23 10 chr3 128858635 128859152 -30740631 + Lx8 LINE L1 6581 7104 -369 5 1568 332 228 120 33 chr3 128859363 128859513 -30740270 - RLTR15 LTR ERVK -196 163 1 5 1568 442 176 62 44 chr3 128859530 128859643 -30740140 + Lx8 LINE L1 7353 7467 -6 5 1568 535 283 69 0 chr3 128859690 128859774 -30740009 + B4A SINE B4 130 223 -69 5 1568 396 0 0 0 chr3 128859774 128859818 -30739965 + (TAA)n Simple_repeat Simple_repeat 2 45 0 5 1568 535 283 69 0 chr3 128859818 128859878 -30739905 + B4A SINE B4 224 283 -9 5 1568 453 50 0 0 chr3 128860006 128860066 -30739717 + (TTG)n Simple_repeat Simple_repeat 3 62 0 5 1568 405 283 0 0 chr3 128860770 128860876 -30738907 + Lx8 LINE L1 6751 6856 -617 5 1568 654 230 37 7 chr3 128863278 128863414 -30736369 + RSINE1 SINE B4 22 161 -4 5 1568 487 305 70 14 chr3 128864491 128864704 -30735079 - MIRb SINE MIR -8 260 36 5 1568 331 264 91 21 chr3 128864877 128865020 -30734763 - MIR SINE MIR 0 262 110 5 1568 281 309 23 54 chr3 128865123 128865254 -30734529 - MIRb SINE MIR -8 260 130 5 1568 23 0 0 0 chr3 128865594 128865617 -30734166 + AT_rich Low_complexity Low_complexity 1 23 0 5 1568 879 209 211 32 chr3 128865628 128865875 -30733908 + B4 SINE B4 2 292 0 5 1568 752 165 6 0 chr3 128865876 128866034 -30733749 + (CA)n Simple_repeat Simple_repeat 2 160 0 5 1568 697 180 12 0 chr3 128866078 128866245 -30733538 + (CA)n Simple_repeat Simple_repeat 2 170 0 5 1568 276 238 0 0 chr3 128866257 128866341 -30733442 + (CA)n Simple_repeat Simple_repeat 1 84 0 5 1568 198 103 0 0 chr3 128868350 128868379 -30731404 + (T)n Simple_repeat Simple_repeat 1 29 0 5 1568 294 306 0 34 chr3 128869999 128870087 -30729696 + C-rich Low_complexity Low_complexity 2 86 0 5 1568 560 70 12 0 chr3 128870094 128870180 -30729603 + (TC)n Simple_repeat Simple_repeat 1 87 0 5 1568 283 169 97 83 chr3 128870867 128870999 -30728784 + MER5A1 DNA MER1_type 19 148 -18 5 1568 306 245 92 55 chr3 128871804 128871943 -30727840 + B4A SINE B4 36 177 -115 5 1568 357 182 66 21 chr3 128871864 128871960 -30727823 + PB1D10 SINE Alu 5 104 -16 5 1568 272 317 67 9 chr3 128872251 128872356 -30727427 - MamRep38 DNA hAT -182 113 3 5 1568 246 125 0 0 chr3 128872376 128872424 -30727359 + (A)n Simple_repeat Simple_repeat 1 48 0 5 1568 675 326 46 21 chr3 128872434 128872716 -30727067 + B4A SINE B4 2 290 -2 5 1568 285 319 124 0 chr3 128872790 128872903 -30726880 - B4A SINE B4 -165 127 1 5 1568 3651 72 37 0 chr3 128874185 128874672 -30725111 - L1_Mus3 LINE L1 0 6638 6134 5 1568 2240 247 69 57 chr3 128874773 128875499 -30724284 + Lx7 LINE L1 6629 7363 -333 5 1568 275 267 68 19 chr3 128875741 128875844 -30723939 - PB1D9 SINE Alu -2 118 11 5 1568 966 169 0 0 chr3 128876233 128876381 -30723402 - B1_Mur4 SINE Alu -2 148 1 5 1568 387 0 0 0 chr3 128876387 128876430 -30723353 + (TC)n Simple_repeat Simple_repeat 1 43 0 5 1568 276 273 45 103 chr3 128876599 128876754 -30723029 - Lx9 LINE L1 -290 7354 7209 5 1568 490 234 162 0 chr3 128876754 128876908 -30722875 + Lx9 LINE L1 7357 7535 -109 5 1568 507 33 0 0 chr3 128877341 128877402 -30722381 + (CA)n Simple_repeat Simple_repeat 1 61 0 5 1568 438 363 11 0 chr3 128878011 128878193 -30721590 - MLT1J LTR MaLR -293 219 36 5 1568 1225 203 0 0 chr3 128878954 128879166 -30720617 + B3 SINE B2 2 213 -3 5 1568 709 112 5 48 chr3 128879571 128879759 -30720024 + (TG)n Simple_repeat Simple_repeat 1 180 0 5 1568 460 158 22 15 chr3 128879777 128879912 -30719871 + (TG)n Simple_repeat Simple_repeat 2 137 0 5 1568 3483 33 0 0 chr3 128879983 128880379 -30719404 - MTA_Mm LTR MaLR 0 396 1 5 1568 690 75 0 0 chr3 128880777 128880870 -30718913 + (GAAA)n Simple_repeat Simple_repeat 3 95 0 5 1568 926 158 20 3 chr3 128880870 128881222 -30718561 + GA-rich Low_complexity Low_complexity 1 358 0 5 1568 287 252 25 50 chr3 128882301 128882378 -30717405 + L1MA5 LINE L1 6103 6178 -122 5 1568 2532 139 42 2 chr3 128882378 128882783 -30717000 + MTC LTR MaLR 1 421 0 5 1568 287 239 32 49 chr3 128882783 128882848 -30716935 + L1MA5 LINE L1 6179 6244 -53 5 1568 261 0 0 0 chr3 128882863 128882892 -30716891 + (TC)n Simple_repeat Simple_repeat 1 29 0 5 1568 504 0 0 0 chr3 128882892 128882947 -30716836 + (CA)n Simple_repeat Simple_repeat 1 56 0 5 1568 1114 216 14 23 chr3 128882993 128883211 -30716572 - B3 SINE B2 0 216 1 5 1568 22 0 0 0 chr3 128883215 128883237 -30716546 + AT_rich Low_complexity Low_complexity 1 22 0 5 1568 420 280 31 13 chr3 128883434 128883593 -30716190 - MIR SINE MIR -4 258 97 5 1568 627 14 0 0 chr3 128884310 128884382 -30715401 + (TC)n Simple_repeat Simple_repeat 1 72 0 5 1568 729 314 17 56 chr3 128885465 128885667 -30714116 + B4A SINE B4 14 206 -86 5 1568 414 0 0 0 chr3 128885667 128885713 -30714070 + (TC)n Simple_repeat Simple_repeat 2 47 0 5 1568 729 305 22 35 chr3 128885713 128885799 -30713984 + B4A SINE B4 207 289 -3 5 1568 207 271 17 0 chr3 128885804 128885863 -30713920 + (CA)n Simple_repeat Simple_repeat 1 60 0 5 1568 914 153 0 11 chr3 128886605 128886783 -30713000 + GA-rich Low_complexity Low_complexity 3 178 0 5 1568 517 284 0 0 chr3 128886962 128887103 -30712680 - B3 SINE B2 -13 203 63 5 1568 485 306 8 0 chr3 128887115 128887239 -30712544 + RSINE1 SINE B4 2 126 -39 5 1568 249 33 0 0 chr3 128887256 128887286 -30712497 + (GA)n Simple_repeat Simple_repeat 1 30 0 5 1568 246 176 0 0 chr3 128888057 128888108 -30711675 + (TA)n Simple_repeat Simple_repeat 1 51 0 5 1568 405 0 0 0 chr3 128888174 128888219 -30711564 + (GA)n Simple_repeat Simple_repeat 2 46 0 5 1568 872 253 0 0 chr3 128888735 128888917 -30710866 + B3 SINE B2 35 216 0 5 1568 26 0 0 0 chr3 128889423 128889449 -30710334 + AT_rich Low_complexity Low_complexity 1 26 0 5 1568 1113 68 0 58 chr3 128890009 128890165 -30709618 + B1_Mus2 SINE Alu 1 147 0 5 1568 240 111 0 0 chr3 128890171 128890216 -30709567 + (A)n Simple_repeat Simple_repeat 1 45 0 5 1568 288 0 0 0 chr3 128890277 128890309 -30709474 + (CA)n Simple_repeat Simple_repeat 2 33 0 5 1568 442 174 16 14 chr3 128890424 128890513 -30709270 + B1_Mus1 SINE Alu 11 104 -43 5 1568 657 212 6 11 chr3 128890516 128890697 -30709086 + GA-rich Low_complexity Low_complexity 1 180 0 6 1568 373 221 76 81 chr3 128890712 128890909 -30708874 - L1MA8 LINE L1 -191 6100 5905 6 1568 783 248 12 0 chr3 128890925 128891086 -30708697 + RSINE1 SINE B4 3 165 0 6 1568 417 39 0 0 chr3 128891104 128891155 -30708628 + (CATA)n Simple_repeat Simple_repeat 1 51 0 6 1568 283 288 0 0 chr3 128891174 128891233 -30708550 + MTE2b LTR MaLR 40 98 -281 6 1568 1167 273 56 16 chr3 128891233 128891538 -30708245 + MTE2b LTR MaLR 58 374 -5 6 1568 402 225 0 12 chr3 128891587 128891656 -30708127 + B1_Mur2 SINE Alu 70 138 -11 6 1568 204 67 0 0 chr3 128891656 128891686 -30708097 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 6 1568 402 225 0 12 chr3 128891686 128891697 -30708086 + B1_Mur2 SINE Alu 139 149 0 6 1568 1195 68 0 0 chr3 128892826 128892974 -30706809 + B1_Mus1 SINE Alu 1 148 0 6 1568 228 67 0 0 chr3 128893375 128893405 -30706378 + (CACCC)n Simple_repeat Simple_repeat 3 32 0 6 1568 459 0 0 0 chr3 128893712 128893763 -30706020 + (TC)n Simple_repeat Simple_repeat 1 51 0 6 1568 184 93 70 0 chr3 128894166 128894209 -30705574 + CT-rich Low_complexity Low_complexity 3 48 0 6 1568 229 302 62 52 chr3 128894327 128894424 -30705359 + MIRc SINE MIR 28 127 -141 6 1568 203 211 123 0 chr3 128895549 128895606 -30704177 - L4 LINE RTE -307 1722 1659 6 1568 613 275 122 15 chr3 128895895 128896157 -30703626 + B4 SINE B4 1 290 -2 6 1568 201 133 0 0 chr3 128896445 128896475 -30703308 + (TC)n Simple_repeat Simple_repeat 2 31 0 6 1568 527 328 29 59 chr3 128896537 128896698 -30703085 + B3A SINE B2 1 158 -40 6 1568 405 0 0 0 chr3 128896698 128896743 -30703040 + (TC)n Simple_repeat Simple_repeat 1 45 0 6 1568 527 328 29 59 chr3 128896743 128896785 -30702998 + B3A SINE B2 159 198 0 6 1568 483 18 0 0 chr3 128896833 128896889 -30702894 + (TC)n Simple_repeat Simple_repeat 1 56 0 6 1568 585 42 0 0 chr3 128896979 128897051 -30702732 + (TC)n Simple_repeat Simple_repeat 1 72 0 6 1568 453 36 0 0 chr3 128897051 128897106 -30702677 + (TCC)n Simple_repeat Simple_repeat 1 55 0 6 1568 198 0 0 0 chr3 128899702 128899724 -30700059 + (A)n Simple_repeat Simple_repeat 1 22 0 6 1568 713 114 0 9 chr3 128901834 128901949 -30697834 + (TCC)n Simple_repeat Simple_repeat 3 116 0 6 1568 185 154 26 0 chr3 128901961 128902000 -30697783 + CT-rich Low_complexity Low_complexity 1 40 0 6 1568 258 149 29 43 chr3 128902809 128902879 -30696904 + GA-rich Low_complexity Low_complexity 5 73 0 6 1568 342 0 0 0 chr3 128904059 128904097 -30695686 + (TTG)n Simple_repeat Simple_repeat 2 39 0 6 1568 21 0 0 0 chr3 128905249 128905270 -30694513 + AT_rich Low_complexity Low_complexity 1 21 0 6 1568 360 0 0 0 chr3 128909337 128909377 -30690406 + (TG)n Simple_repeat Simple_repeat 2 41 0 6 1568 510 170 0 0 chr3 128909390 128909484 -30690299 + (TAA)n Simple_repeat Simple_repeat 2 95 0 6 1568 226 250 0 0 chr3 128911525 128911569 -30688214 + (CA)n Simple_repeat Simple_repeat 1 44 0 6 1568 570 41 0 0 chr3 128912099 128912172 -30687611 + (TC)n Simple_repeat Simple_repeat 2 74 0 6 1568 206 0 0 65 chr3 128912544 128912575 -30687208 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 6 1568 459 0 0 0 chr3 128912741 128912792 -30686991 + (CA)n Simple_repeat Simple_repeat 2 52 0 6 1568 503 31 15 0 chr3 128913289 128913354 -30686429 + (TC)n Simple_repeat Simple_repeat 1 66 0 6 1568 180 357 14 14 chr3 128914021 128914092 -30685691 + L3 LINE CR1 4412 4482 -7 6 1568 642 26 0 0 chr3 128914104 128914180 -30685603 + (GAGAA)n Simple_repeat Simple_repeat 4 79 0 6 1568 234 0 0 0 chr3 128915371 128915397 -30684386 + (TG)n Simple_repeat Simple_repeat 2 27 0 6 1568 441 0 0 0 chr3 128923597 128923646 -30676137 + (CA)n Simple_repeat Simple_repeat 2 50 0 6 1568 221 234 52 0 chr3 128924543 128924620 -30675163 + C-rich Low_complexity Low_complexity 2 82 0 6 1568 229 175 0 0 chr3 128925274 128925314 -30674469 + C-rich Low_complexity Low_complexity 1 40 0 6 1568 205 200 0 0 chr3 128927392 128927432 -30672351 + A-rich Low_complexity Low_complexity 2 41 0 6 1568 202 216 0 19 chr3 128928863 128928915 -30670868 + C-rich Low_complexity Low_complexity 3 53 0 6 1568 557 28 14 0 chr3 128930801 128930872 -30668911 + (TC)n Simple_repeat Simple_repeat 1 72 0 6 1568 24 32 0 0 chr3 128931256 128931287 -30668496 + AT_rich Low_complexity Low_complexity 1 31 0 6 1568 254 85 68 0 chr3 128931296 128931355 -30668428 + (CATGT)n Simple_repeat Simple_repeat 1 63 0 6 1568 239 235 87 14 chr3 128931358 128931427 -30668356 - RSINE1 SINE B4 -36 129 56 6 1568 414 230 40 0 chr3 128931428 128931528 -30668255 - B4 SINE B4 -188 104 1 6 1568 201 357 0 18 chr3 128932066 128932123 -30667660 + MIRm SINE MIR 220 275 -1 6 1568 285 286 82 12 chr3 128932442 128932540 -30667243 + PB1D7 SINE Alu 10 112 -8 6 1568 1369 98 0 5 chr3 128932820 128933014 -30666769 - B2_Mm2 SINE B2 0 195 3 6 1568 947 158 46 52 chr3 128933015 128933209 -30666574 - B2_Mm2 SINE B2 -1 194 2 6 1568 430 70 28 0 chr3 128933460 128933531 -30666252 + (TC)n Simple_repeat Simple_repeat 2 74 0 6 1568 855 94 0 0 chr3 128933534 128933661 -30666122 + (TCTA)n Simple_repeat Simple_repeat 2 128 0 6 1568 1457 75 0 5 chr3 128934123 128934312 -30665471 - B2_Mm2 SINE B2 -7 188 1 6 1568 452 18 18 0 chr3 128934389 128934446 -30665337 + (TCTA)n Simple_repeat Simple_repeat 4 61 0 6 1568 781 269 177 81 chr3 128934692 128934878 -30664905 - MTE2a LTR MaLR -2 377 189 6 1568 2268 204 8 175 chr3 128934878 128935609 -30664174 - RMER19C LTR ERVK -2 609 1 6 1568 781 269 177 81 chr3 128935609 128935766 -30664017 - MTE2a LTR MaLR -191 188 1 6 1568 1416 77 6 0 chr3 128935792 128935974 -30663809 - B2_Mm1t SINE B2 -10 183 1 6 1568 415 272 131 13 chr3 128936125 128936278 -30663505 + RMER15 LTR ERVL 402 572 -3 6 1568 1620 256 155 11 chr3 128936414 128936970 -30662813 + Lx8 LINE L1 6621 7256 -217 6 1568 230 300 0 16 chr3 128936975 128937036 -30662747 + RMER15 LTR ERVL 408 467 -108 6 1568 449 265 14 56 chr3 128937264 128937408 -30662375 + ID_B1 SINE B4 85 222 -2 6 1568 225 279 0 0 chr3 128937438 128937481 -30662302 + ID2 SINE ID 25 67 -16 6 1568 624 98 0 0 chr3 128937483 128937585 -30662198 + (CA)n Simple_repeat Simple_repeat 2 103 0 6 1568 1189 105 6 12 chr3 128937769 128937926 -30661857 + B2_Mm2 SINE B2 1 156 -39 6 1568 396 0 0 0 chr3 128937926 128937970 -30661813 + (TAAA)n Simple_repeat Simple_repeat 2 45 0 6 1568 1189 105 6 12 chr3 128937970 128937985 -30661798 + B2_Mm2 SINE B2 157 172 -23 6 1568 551 209 38 124 chr3 128938178 128938364 -30661419 - Lx4B LINE L1 0 7058 6889 6 1568 2274 161 274 6 chr3 128938384 128938865 -30660918 - Lx2B LINE L1 -1 6999 6390 6 1568 3716 127 7 7 chr3 128938866 128939435 -30660348 + Lx2 LINE L1 5819 6387 -610 6 1568 1199 6 2 65 chr3 128939836 128940408 -30659375 + (GAA)n Simple_repeat Simple_repeat 1 536 0 6 1568 435 119 0 0 chr3 128940623 128940690 -30659093 + (TG)n Simple_repeat Simple_repeat 2 68 0 6 1568 252 0 0 0 chr3 128940928 128940956 -30658827 + (CA)n Simple_repeat Simple_repeat 1 28 0 6 1568 482 225 18 0 chr3 128940982 128941209 -30658574 + (CA)n Simple_repeat Simple_repeat 1 231 0 6 1568 311 247 144 0 chr3 128942199 128942296 -30657487 + RSINE1 SINE B4 1 111 -54 6 1568 445 291 104 0 chr3 128942333 128942467 -30657316 - B1F1 SINE Alu -1 148 1 6 1568 798 234 31 215 chr3 128942526 128942749 -30657034 + B3 SINE B2 14 210 -6 6 1568 671 208 16 0 chr3 128942886 128943011 -30656772 - B1_Mur3 SINE Alu -1 148 22 6 1568 440 268 35 9 chr3 128943116 128943229 -30656554 - PB1D10 SINE Alu 0 117 2 6 1568 345 339 116 6 chr3 128943234 128943406 -30656377 - MIRb SINE MIR -52 216 26 6 1568 240 35 0 0 chr3 128943654 128943683 -30656100 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 6 1568 7425 33 1 2 chr3 128943687 128944513 -30655270 + L1Md_F2 LINE L1 5739 6563 -19 6 1568 360 0 0 0 chr3 128944515 128944555 -30655228 + (GA)n Simple_repeat Simple_repeat 2 41 0 6 1568 2078 66 11 4 chr3 128945298 128945572 -30654211 + L1_Mus3 LINE L1 6363 6638 0 6 1568 669 149 0 0 chr3 128945705 128945866 -30653917 + (GA)n Simple_repeat Simple_repeat 2 162 0 6 1568 211 318 91 27 chr3 128946320 128946354 -30653429 - B3 SINE B2 -98 118 2 6 1568 428 171 13 0 chr3 128946354 128946430 -30653353 - B4A SINE B4 -214 78 2 6 1568 329 310 135 26 chr3 128946473 128946665 -30653118 - B3 SINE B2 -2 214 2 6 1568 661 138 315 30 chr3 128946765 128946930 -30652853 + B3 SINE B2 1 212 -4 6 1568 235 339 15 61 chr3 128947366 128947432 -30652351 + RSINE1 SINE B4 100 162 -3 6 1568 306 0 0 0 chr3 128947436 128947470 -30652313 + (CA)n Simple_repeat Simple_repeat 2 35 0 6 1568 281 328 16 0 chr3 128947976 128948037 -30651746 + tRNA-Ala-GCY_ tRNA tRNA 6 67 -8 6 1568 481 298 42 83 chr3 128948052 128948268 -30651515 + MLT1F1 LTR MaLR 110 316 -232 6 1568 421 115 0 0 chr3 128948263 128948324 -30651459 + MT2B2 LTR ERVL 1 61 -523 6 1568 1018 217 42 7 chr3 128948324 128948602 -30651181 + ORR1B1 LTR MaLR 96 771 -1192 6 1568 581 324 85 9 chr3 128948604 128948828 -30650955 + MLT1F1 LTR MaLR 327 567 -2 6 1568 225 317 61 45 chr3 128948828 128948954 -30650829 + MLT1F1-int LTR MaLR 11 138 -1351 6 1568 346 319 43 0 chr3 128949086 128949180 -30650603 + PB1D10 SINE Alu 12 109 -8 6 1568 1211 45 0 13 chr3 128949252 128949408 -30650375 + B2_Mm2 SINE B2 1 154 -41 6 1568 287 0 53 0 chr3 128949409 128949447 -30650336 + (TAAA)n Simple_repeat Simple_repeat 4 43 0 6 1568 252 244 33 152 chr3 128949460 128949552 -30650231 + ID4 SINE ID 3 83 0 6 1568 799 309 25 46 chr3 128949554 128949638 -30650145 + MLT1F1-int LTR MaLR 310 360 -1129 6 1568 522 0 0 0 chr3 128949638 128949696 -30650087 + (TC)n Simple_repeat Simple_repeat 1 58 0 6 1568 799 305 20 40 chr3 128949696 128949940 -30649843 + MLT1F1-int LTR MaLR 361 607 -882 6 1568 491 313 165 39 chr3 128949975 128950036 -30649747 + MLT1F1-int LTR MaLR 733 799 -690 6 1568 653 0 13 0 chr3 128950036 128950113 -30649670 + (TCCC)n Simple_repeat Simple_repeat 4 81 0 6 1568 491 305 194 33 chr3 128950113 128950604 -30649179 + MLT1F1-int LTR MaLR 800 1311 -178 6 1568 431 316 57 45 chr3 128950775 128950951 -30648832 + MLT1F1 LTR MaLR 17 194 -354 6 1568 1153 277 114 19 chr3 128951033 128951394 -30648389 - MLT1F LTR MaLR 0 548 154 6 1568 661 286 65 43 chr3 128951529 128951759 -30648024 + Tigger5 DNA MER2_type 8 242 -2164 6 1568 9584 48 4 3 chr3 128951800 128953677 -30646106 - L1Md_F2 LINE L1 -1 6581 4703 7 1568 214 51 24 49 chr3 128954417 128954458 -30645325 + (CAAA)n Simple_repeat Simple_repeat 1 40 0 7 1568 1557 28 57 0 chr3 128954978 128955155 -30644628 - B2_Mm1t SINE B2 -6 187 1 7 1568 1046 159 21 26 chr3 128955455 128955649 -30644134 - B2_Mm2 SINE B2 0 195 3 7 1568 456 19 0 0 chr3 128955896 128955949 -30643834 + (TG)n Simple_repeat Simple_repeat 2 54 0 7 1568 333 0 0 0 chr3 128956376 128956413 -30643370 + (TC)n Simple_repeat Simple_repeat 2 38 0 7 1568 279 0 0 0 chr3 128956413 128956443 -30643340 + (TG)n Simple_repeat Simple_repeat 2 32 0 7 1568 809 208 7 0 chr3 128956697 128956841 -30642942 + B1_Mus2 SINE Alu 2 146 -1 7 1568 1176 49 0 27 chr3 128958146 128958283 -30641500 + B1_Mus1 SINE Alu 2 135 -13 7 1568 306 0 0 0 chr3 128958283 128958317 -30641466 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 7 1568 30 27 0 0 chr3 128958687 128958724 -30641059 + AT_rich Low_complexity Low_complexity 1 37 0 7 1568 225 221 13 13 chr3 128958925 128959003 -30640780 + (TAA)n Simple_repeat Simple_repeat 3 80 0 7 1568 226 234 31 15 chr3 128960105 128960154 -30639629 + polypyrimidine Low_complexity Low_complexity 17 67 0 7 1568 1089 95 14 0 chr3 128960154 128960301 -30639482 - B1_Mur4 SINE Alu -1 149 1 7 1568 226 234 31 15 chr3 128960301 128960316 -30639467 + polypyrimidine Low_complexity Low_complexity 2 16 0 7 1568 207 211 0 19 chr3 128960854 128960907 -30638876 + T-rich Low_complexity Low_complexity 2 53 0 7 1568 811 207 138 0 chr3 128960913 128961087 -30638696 - B3 SINE B2 -6 210 13 7 1568 400 173 96 24 chr3 128961226 128961309 -30638474 + B1_Mur3 SINE Alu 61 149 0 7 1568 591 305 31 45 chr3 128961625 128961917 -30637866 - B4A SINE B4 -4 288 1 7 1568 250 290 41 41 chr3 128962551 128962648 -30637135 + MTEa LTR MaLR 273 369 -10 7 1568 796 320 11 35 chr3 128962728 128963010 -30636773 + MTE-int LTR MaLR 72 346 -1234 7 1568 613 238 61 8 chr3 128963022 128963153 -30636630 + B1_Mur2 SINE Alu 7 144 -5 7 1568 408 81 27 13 chr3 128963153 128963228 -30636555 + (GA)n Simple_repeat Simple_repeat 2 77 0 7 1568 1527 327 150 65 chr3 128963250 128963737 -30636046 + MTE-int LTR MaLR 353 874 -706 7 1568 184 30 61 0 chr3 128963737 128963770 -30636013 + (TTG)n Simple_repeat Simple_repeat 2 36 0 7 1568 1203 36 7 0 chr3 128963770 128963908 -30635875 - B1_Mus1 SINE Alu -8 140 2 7 1568 1527 327 150 65 chr3 128963908 128964524 -30635259 + MTE-int LTR MaLR 875 1550 -30 7 1568 288 298 0 23 chr3 128964690 128964776 -30635007 + MTEb LTR MaLR 279 362 -17 7 1568 289 310 19 84 chr3 128965180 128965335 -30634448 + L4 LINE RTE 94 238 -1791 7 1568 184 364 149 0 chr3 128966088 128966209 -30633574 - L2 LINE L2 -1413 2006 1868 7 1568 351 0 0 0 chr3 128967690 128967729 -30632054 + (TG)n Simple_repeat Simple_repeat 2 40 0 7 1568 242 285 85 62 chr3 128967929 128968008 -30631775 - L1M4 LINE L1 -415 5763 5682 7 1568 1043 103 7 40 chr3 128968008 128968160 -30631623 + B1_Mur4 SINE Alu 2 148 -2 7 1568 242 285 85 62 chr3 128968160 128968256 -30631527 - L1M4 LINE L1 -497 5681 5584 7 1568 5712 86 33 13 chr3 128968330 128968531 -30631252 + Lx2 LINE L1 6228 6444 -553 7 1568 4944 94 115 84 chr3 128968531 128969391 -30630392 - RMER17D LTR ERVK -2 887 1 7 1568 5712 86 33 13 chr3 128969391 128969944 -30629839 + Lx2 LINE L1 6445 6997 0 7 1568 28 29 0 0 chr3 128970258 128970293 -30629490 + AT_rich Low_complexity Low_complexity 1 35 0 7 1568 949 282 28 103 chr3 128970338 128970734 -30629049 - ORR1D2 LTR MaLR -4 366 1 7 1568 22 35 0 0 chr3 128971853 128971882 -30627901 + AT_rich Low_complexity Low_complexity 1 29 0 7 1568 213 232 0 0 chr3 128971905 128971974 -30627809 + (CA)n Simple_repeat Simple_repeat 1 69 0 7 1568 369 301 0 0 chr3 128971985 128972078 -30627705 - RSINE1 SINE B4 -24 141 49 7 1568 31 0 0 0 chr3 128972542 128972573 -30627210 + AT_rich Low_complexity Low_complexity 1 31 0 7 1568 219 307 0 0 chr3 128974413 128974550 -30625233 + (TG)n Simple_repeat Simple_repeat 1 137 0 7 1568 509 229 6 0 chr3 128974567 128974724 -30625059 + (TG)n Simple_repeat Simple_repeat 2 159 0 7 1568 300 333 42 67 chr3 128974766 128974840 -30624943 + RSINE1 SINE B4 12 80 -85 7 24 2050 132 50 3 chr3 128974840 128975137 -30624646 + RLTR10E LTR ERVK 1 311 0 7 1569 300 333 42 67 chr3 128975137 128975181 -30624602 + RSINE1 SINE B4 81 127 -38 7 1569 471 255 47 87 chr3 128975344 128975494 -30624289 + B4A SINE B4 78 221 -71 7 1569 1094 72 0 0 chr3 128975361 128975500 -30624283 + B1_Mm SINE Alu 9 147 0 7 1569 930 159 0 0 chr3 128975556 128975701 -30624082 + B1_Mur4 SINE Alu 6 150 0 7 1569 267 103 0 0 chr3 128975724 128975763 -30624020 + (GGGA)n Simple_repeat Simple_repeat 4 42 0 7 1569 699 90 0 0 chr3 128975763 128975863 -30623920 + (TAGA)n Simple_repeat Simple_repeat 2 101 0 7 1569 188 373 65 43 chr3 128976013 128976198 -30623585 + L2b LINE L2 2697 2885 -534 7 1569 237 398 29 19 chr3 128976466 128976571 -30623212 + L2b LINE L2 3244 3349 -26 7 1569 1217 219 5 36 chr3 128976618 128976841 -30622942 + B3 SINE B2 1 216 0 7 1569 236 88 52 17 chr3 128978647 128978705 -30621078 + (CA)n Simple_repeat Simple_repeat 1 60 0 7 1569 980 175 205 0 chr3 128978982 128979153 -30620630 - B3 SINE B2 -10 206 1 7 1569 262 105 0 0 chr3 128979262 128979300 -30620483 - L1_Mus1 LINE L1 -683 5884 5847 7 1569 522 56 14 0 chr3 128979300 128979371 -30620412 + L1_Mus2 LINE L1 6495 6566 0 7 1569 1455 95 37 100 chr3 128979880 128980149 -30619634 - Lx3_Mus LINE L1 0 7009 6758 7 1569 1432 56 62 0 chr3 128980179 128980358 -30619425 + B2_Mm2 SINE B2 2 191 -4 7 1569 229 294 44 0 chr3 128981083 128981151 -30618632 + ORR1E LTR MaLR 1 71 -288 7 1569 337 285 57 127 chr3 128981248 128981493 -30618290 + ORR1E LTR MaLR 132 359 0 7 1569 940 170 142 11 chr3 128982763 128982953 -30616830 - B3 SINE B2 -1 215 1 7 1569 971 84 14 0 chr3 128983073 128983215 -30616568 + (GAAA)n Simple_repeat Simple_repeat 4 147 0 7 1569 732 265 42 21 chr3 128984741 128984934 -30614849 + B3A SINE B2 1 197 -1 7 1569 342 338 52 0 chr3 128985168 128985304 -30614479 + Lx8 LINE L1 6852 6994 -479 7 1569 553 315 7 0 chr3 128986323 128986466 -30613317 - RSINE1 SINE B4 -19 146 3 7 1569 504 264 8 46 chr3 128987574 128987705 -30612078 + PB1 SINE Alu 1 126 -1 7 1569 343 215 0 0 chr3 128987715 128987780 -30612003 + ID4 SINE ID 5 69 -14 7 1569 572 283 48 12 chr3 128989888 128990084 -30609699 + MIRb SINE MIR 3 213 -55 7 1569 235 264 26 77 chr3 128990274 128990352 -30609431 - MIR SINE MIR -106 156 83 7 1569 515 223 17 59 chr3 128990538 128990657 -30609126 + PB1D10 SINE Alu 3 116 -1 7 1569 638 279 111 58 chr3 128990968 128991211 -30608572 + B4A SINE B4 2 257 -35 7 1569 273 340 53 0 chr3 128991310 128991404 -30608379 + PB1 SINE Alu 12 110 -17 7 1569 456 299 65 7 chr3 128991588 128991726 -30608057 - B1F SINE Alu 0 149 4 7 1569 225 0 0 0 chr3 128992768 128992793 -30606990 + (TTTTG)n Simple_repeat Simple_repeat 3 27 0 7 1569 700 278 47 19 chr3 128993400 128993613 -30606170 + ID_B1 SINE B4 2 220 -4 7 1569 334 294 69 34 chr3 128994548 128994752 -30605031 + L1MB8 LINE L1 5781 5991 -187 7 1569 268 359 30 23 chr3 128994854 128994985 -30604798 - B1_Mus2 SINE Alu -15 132 1 7 1569 842 289 0 16 chr3 128994985 128995065 -30604718 - ID SINE ID -146 78 2 7 1569 198 257 92 26 chr3 128995311 128995387 -30604396 - L2c LINE L2 -54 3333 3253 7 1569 561 125 0 0 chr3 128995387 128995475 -30604308 + (GA)n Simple_repeat Simple_repeat 1 88 0 7 1569 213 261 43 0 chr3 128995768 128995837 -30603946 + GA-rich Low_complexity Low_complexity 3 74 0 7 1569 381 276 31 0 chr3 128996853 128996951 -30602832 - B1F SINE Alu -1 148 48 7 1569 321 346 0 0 chr3 128999134 128999238 -30600545 + MIR SINE MIR 31 134 -128 7 1569 829 199 13 20 chr3 128999468 128999617 -30600166 - B1_Mus1 SINE Alu 0 148 1 7 1569 396 342 79 54 chr3 129000702 129000980 -30598803 - B4A SINE B4 0 292 8 1 1569 372 22 0 0 chr3 129002173 129002218 -30597565 + (CA)n Simple_repeat Simple_repeat 1 45 0 2 1569 246 32 0 0 chr3 129003153 129003184 -30596599 + (TTTTG)n Simple_repeat Simple_repeat 1 31 0 3 1569 260 235 0 29 chr3 129003189 129003259 -30596524 - PB1D7 SINE Alu 0 120 53 4 1569 342 0 0 0 chr3 129003264 129003302 -30596481 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 5 1569 749 146 7 0 chr3 129003506 129003643 -30596140 + CT-rich Low_complexity Low_complexity 1 138 0 6 1569 773 181 19 77 chr3 129004793 129004949 -30594834 - B1_Mur1 SINE Alu 0 149 3 7 1569 24 0 0 0 chr3 129004951 129004975 -30594808 + AT_rich Low_complexity Low_complexity 1 24 0 8 1569 631 287 99 8 chr3 129005986 129006239 -30593544 + MLT1A LTR MaLR 81 356 -18 9 1569 570 79 0 0 chr3 129006839 129006928 -30592855 + (CA)n Simple_repeat Simple_repeat 2 90 0 1 1569 357 62 0 0 chr3 129007985 129008033 -30591750 + (TC)n Simple_repeat Simple_repeat 1 48 0 1 1569 375 233 0 0 chr3 129009741 129009814 -30589969 - ID4_ SINE ID -8 75 3 1 1569 427 287 0 0 chr3 129009814 129009929 -30589854 - PB1D10 SINE Alu -2 115 1 1 1569 240 240 160 15 chr3 129010168 129010299 -30589484 + MER20 DNA MER1_type 70 219 0 1 1569 383 197 14 0 chr3 129010406 129010477 -30589306 + B1_Mur3 SINE Alu 4 75 -74 1 1569 525 251 32 64 chr3 129010567 129010754 -30589029 + Lx8 LINE L1 7119 7299 -174 1 1569 1333 149 9 5 chr3 129012295 129012517 -30587266 - URR1B DNA MER1_type -2 223 1 1 1569 225 0 0 0 chr3 129013764 129013789 -30585994 + (TA)n Simple_repeat Simple_repeat 2 26 0 1 1569 349 20 40 0 chr3 129014105 129014155 -30585628 + (GA)n Simple_repeat Simple_repeat 1 52 0 1 1569 666 167 0 0 chr3 129014435 129014615 -30585168 + CT-rich Low_complexity Low_complexity 1 180 0 2 1569 201 39 0 0 chr3 129014617 129014643 -30585140 + (TC)n Simple_repeat Simple_repeat 1 26 0 2 1569 827 159 22 0 chr3 129014643 129014781 -30585002 - B1_Mus1 SINE Alu -5 143 3 2 1569 1071 149 193 0 chr3 129015938 129016119 -30583664 + B3 SINE B2 1 216 0 2 1569 24 0 0 0 chr3 129016480 129016504 -30583279 + AT_rich Low_complexity Low_complexity 1 24 0 2 1569 955 177 82 20 chr3 129017459 129017655 -30582128 - B3 SINE B2 -8 208 1 2 1569 314 299 37 9 chr3 129017989 129018097 -30581686 + MER46C DNA MER2_type 5 115 -223 2 1569 207 69 0 0 chr3 129018137 129018166 -30581617 + (CA)n Simple_repeat Simple_repeat 2 30 0 2 1569 758 311 4 22 chr3 129018462 129018735 -30581048 + Lx7 LINE L1 7147 7414 -282 2 1569 623 184 7 0 chr3 129018760 129018896 -30580887 + (TAGA)n Simple_repeat Simple_repeat 4 140 0 2 1569 592 200 19 45 chr3 129018997 129019141 -30580642 + B1_Mur4 SINE Alu 3 140 -10 3 1569 38 0 0 0 chr3 129019266 129019304 -30580479 + AT_rich Low_complexity Low_complexity 1 38 0 3 1569 259 285 81 8 chr3 129021154 129021278 -30578505 + MIRb SINE MIR 36 168 -100 3 1569 899 235 0 0 chr3 129021311 129021490 -30578293 - B3 SINE B2 -36 180 2 3 1569 449 304 29 7 chr3 129021560 129021699 -30578084 + RSINE1 SINE B4 3 144 -21 3 1569 232 149 0 41 chr3 129021833 129021882 -30577901 + T-rich Low_complexity Low_complexity 1 47 0 3 1569 220 340 0 0 chr3 129024850 129024903 -30574880 + ID4 SINE ID 2 54 -29 3 1569 324 0 0 0 chr3 129025047 129025083 -30574700 + (TG)n Simple_repeat Simple_repeat 2 37 0 3 1569 396 250 101 9 chr3 129025245 129025354 -30574429 + PB1D7 SINE Alu 1 119 -1 3 1569 198 91 0 0 chr3 129025383 129025416 -30574367 + (GA)n Simple_repeat Simple_repeat 2 34 0 3 1569 282 95 0 0 chr3 129025420 129025462 -30574321 + (CCA)n Simple_repeat Simple_repeat 3 44 0 4 1569 386 235 0 0 chr3 129025588 129025669 -30574114 + L1MC4 LINE L1 6748 6828 -1054 4 1569 687 178 29 22 chr3 129025679 129025817 -30573966 + B1_Mus1 SINE Alu 10 148 0 4 1569 424 307 53 5 chr3 129025818 129026008 -30573775 + L1MC4 LINE L1 6859 7057 -985 4 1569 678 25 0 0 chr3 129026014 129026094 -30573689 + (TCC)n Simple_repeat Simple_repeat 3 82 0 4 1569 387 239 152 0 chr3 129026143 129026235 -30573548 - RSINE1 SINE B4 -18 147 42 4 1569 1336 213 146 0 chr3 129026261 129026623 -30573160 + MTD LTR MaLR 5 419 0 4 1569 240 367 0 0 chr3 129026691 129026770 -30573013 - ID4_ SINE ID -3 80 2 4 1569 976 92 7 0 chr3 129026829 129026971 -30572812 + B2_Mm1t SINE B2 37 179 -14 4 1569 575 184 19 58 chr3 129027107 129027268 -30572515 + B1_Mur4 SINE Alu 10 149 -1 4 1569 253 348 42 56 chr3 129027320 129027533 -30572250 + L1MC4 LINE L1 7410 7619 -423 4 1569 683 54 0 11 chr3 129027976 129028069 -30571714 + (TTTTG)n Simple_repeat Simple_repeat 2 93 0 4 1569 454 163 65 0 chr3 129028069 129028161 -30571622 - B1_Mur2 SINE Alu -10 139 42 5 1569 596 6 0 134 chr3 129028177 129028378 -30571405 + (TCTCCC)n Simple_repeat Simple_repeat 4 177 0 5 1569 183 42 0 0 chr3 129028405 129028429 -30571354 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 5 1569 799 74 30 0 chr3 129028644 129028779 -30571004 + (CAGA)n Simple_repeat Simple_repeat 2 140 0 5 1569 430 287 0 0 chr3 129029476 129029575 -30570208 - PB1D10 SINE Alu -1 116 18 5 1569 980 181 46 5 chr3 129029575 129029791 -30569992 + RLTR24 LTR ERV1 1 225 -304 5 1569 216 0 0 0 chr3 129029845 129029869 -30569914 + (CATAT)n Simple_repeat Simple_repeat 2 25 0 5 1569 732 149 39 45 chr3 129029873 129030028 -30569755 + RLTR24 LTR ERV1 192 345 -184 5 1569 880 186 119 0 chr3 129030145 129030381 -30569402 - RMER10B LTR ERVL -133 265 2 5 1569 707 218 99 6 chr3 129030381 129030551 -30569232 + RLTR24 LTR ERV1 344 529 0 5 1569 792 188 0 0 chr3 129030724 129030862 -30568921 + B1_Mur2 SINE Alu 9 146 -3 5 1569 183 42 0 0 chr3 129032698 129032722 -30567061 + (TTG)n Simple_repeat Simple_repeat 2 25 0 5 1569 21 0 0 0 chr3 129033063 129033084 -30566699 + AT_rich Low_complexity Low_complexity 1 21 0 6 1569 31 44 0 0 chr3 129033708 129033753 -30566030 + AT_rich Low_complexity Low_complexity 1 45 0 6 1569 458 226 48 0 chr3 129034484 129034630 -30565153 + (CACAG)n Simple_repeat Simple_repeat 4 156 0 6 1569 414 94 0 0 chr3 129034630 129034694 -30565089 + (CACAA)n Simple_repeat Simple_repeat 5 68 0 6 1569 240 215 31 0 chr3 129034711 129034776 -30565007 + (CACAG)n Simple_repeat Simple_repeat 3 69 0 6 1569 218 227 0 0 chr3 129035966 129036010 -30563773 + T-rich Low_complexity Low_complexity 1 44 0 6 1569 621 280 97 61 chr3 129036775 129036852 -30562931 + B4 SINE B4 5 83 -209 6 1569 219 88 0 0 chr3 129036852 129036886 -30562897 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 6 1569 621 280 97 61 chr3 129036886 129037086 -30562697 + B4 SINE B4 84 291 -1 6 1569 1254 160 19 5 chr3 129037302 129037509 -30562274 - B3 SINE B2 -6 210 1 6 1569 327 65 0 0 chr3 129038244 129038290 -30561493 + (TG)n Simple_repeat Simple_repeat 2 47 0 6 1569 1206 48 0 0 chr3 129038845 129038990 -30560793 - B1_Mus2 SINE Alu -1 146 2 7 1569 225 154 0 0 chr3 129040068 129040107 -30559676 + (TTCA)n Simple_repeat Simple_repeat 1 39 0 7 1569 286 250 14 143 chr3 129040414 129040554 -30559229 + RSINE1 SINE B4 4 125 -40 7 1569 305 206 55 31 chr3 129040750 129040847 -30558936 + B1F1 SINE Alu 14 112 -8 7 1569 302 100 17 0 chr3 129041126 129041186 -30558597 + (CAAA)n Simple_repeat Simple_repeat 2 62 0 7 1569 279 269 164 20 chr3 129041758 129041959 -30557824 + ORR1E LTR MaLR 4 233 -126 7 1569 331 373 43 48 chr3 129042134 129042551 -30557232 + MLT1D LTR MaLR 39 453 -52 7 1569 491 309 43 19 chr3 129042559 129042770 -30557013 - B3 SINE B2 0 216 1 7 1569 1445 201 74 76 chr3 129042832 129043225 -30556558 - ORR1B1 LTR MaLR -2 392 1 7 1569 225 0 0 0 chr3 129043626 129043651 -30556132 + (A)n Simple_repeat Simple_repeat 1 25 0 7 1569 1857 130 100 70 chr3 129043810 129043987 -30555796 - ORR1C2 LTR MaLR -2 382 175 8 1569 306 67 0 0 chr3 129043987 129044032 -30555751 + (CAGAGA)n Simple_repeat Simple_repeat 2 46 0 8 1569 1857 130 100 70 chr3 129044032 129044225 -30555558 - ORR1C2 LTR MaLR -210 174 1 8 1569 1353 202 183 93 chr3 129044621 129045042 -30554741 + MT2A LTR ERVL 1 459 -74 8 1569 183 229 0 0 chr3 129045056 129045117 -30554666 + (TA)n Simple_repeat Simple_repeat 2 62 0 8 1569 229 156 0 0 chr3 129045167 129045212 -30554571 + MT2A LTR ERVL 489 533 0 8 1569 1969 174 16 62 chr3 129045848 129046233 -30553550 + ORR1B2 LTR MaLR 1 367 0 8 1569 3374 111 14 16 chr3 129046855 129047352 -30552431 + Lx4A LINE L1 6563 7058 0 8 1569 180 0 0 0 chr3 129047382 129047402 -30552381 + (CAA)n Simple_repeat Simple_repeat 2 21 0 8 1569 1072 219 27 0 chr3 129047691 129047915 -30551868 + ORR1D2 LTR MaLR 5 234 -136 8 1569 396 0 0 0 chr3 129047967 129048011 -30551772 + (TC)n Simple_repeat Simple_repeat 2 45 0 8 1569 266 295 43 57 chr3 129048550 129048780 -30551003 - MER33 DNA MER1_type -1 323 97 8 1569 2601 294 40 12 chr3 129048828 129049670 -30550113 + Lx8 LINE L1 6218 7083 -390 9 1569 1468 177 58 47 chr3 129049671 129049924 -30549859 + RLTR20B1 LTR ERVK 216 472 -91 9 1569 477 0 0 0 chr3 129049924 129049977 -30549806 + (TG)n Simple_repeat Simple_repeat 2 54 0 9 1569 1468 177 58 47 chr3 129049977 129050067 -30549716 + RLTR20B1 LTR ERVK 473 563 0 9 1569 261 315 25 59 chr3 129050067 129050185 -30549598 + Lx8 LINE L1 7170 7283 -190 9 1569 373 240 37 28 chr3 129050948 129051045 -30548738 + RSINE1 SINE B4 2 99 -66 9 1569 1465 273 54 14 chr3 129051045 129051546 -30548237 - RMER5 LTR ERV1 -1 533 13 9 1569 499 194 10 92 chr3 129051651 129051819 -30547964 + PB1D9 SINE Alu 2 144 -5 9 1569 551 258 25 38 chr3 129051978 129052143 -30547640 - ID_B1 SINE B4 -41 251 84 9 1569 336 83 0 0 chr3 129052226 129052274 -30547509 - RMER10B LTR ERVL 0 398 351 9 1569 279 0 0 0 chr3 129052274 129052305 -30547478 + (TG)n Simple_repeat Simple_repeat 2 32 0 9 1569 377 288 89 22 chr3 129052332 129052467 -30547316 - RSINE1 SINE B4 -20 145 2 9 1569 1382 161 30 97 chr3 129052512 129052883 -30546900 - RMER10B LTR ERVL -52 346 1 9 1569 827 142 95 0 chr3 129054901 129055070 -30544713 + ORR1D1 LTR MaLR 190 374 0 1 1569 935 159 143 5 chr3 129055074 129055166 -30544617 - RLTR20D LTR ERVK 0 568 477 1 1569 378 94 0 0 chr3 129055166 129055230 -30544553 + (CA)n Simple_repeat Simple_repeat 2 65 0 1 1569 1904 152 34 11 chr3 129055230 129055622 -30544161 - RLTR20D LTR ERVK -92 476 1 1 1569 653 311 86 35 chr3 129055639 129056012 -30543771 + MT2A LTR ERVL 142 533 0 1 1569 260 195 112 26 chr3 129056012 129056038 -30543745 - RMER17C LTR ERVK -132 278 240 1 1569 1105 111 0 16 chr3 129056038 129056221 -30543562 + (GGGAGA)n Simple_repeat Simple_repeat 1 180 0 1 1569 260 195 112 26 chr3 129056221 129056283 -30543500 - RMER17C LTR ERVK -171 239 181 1 1569 670 178 45 37 chr3 129057105 129057239 -30542544 - B1_Mur1 SINE Alu 0 149 15 1 1569 6323 61 28 2 chr3 129057239 129058027 -30541756 - RLTR13C2 LTR ERVK 0 808 1 1 1569 1753 189 46 9 chr3 129058027 129058374 -30541409 + ORR1D1 LTR MaLR 12 371 -3 1 1569 671 272 131 0 chr3 129058403 129058671 -30541112 + L1MC2 LINE L1 5896 6198 -146 1 1569 249 272 13 45 chr3 129058731 129058823 -30540960 - ID2 SINE ID -64 88 2 1 1569 593 276 28 7 chr3 129058832 129058974 -30540809 - ID_B1 SINE B4 -2 222 78 1 1569 261 217 0 0 chr3 129059520 129059603 -30540180 + (CA)n Simple_repeat Simple_repeat 1 83 0 1 1569 261 289 0 0 chr3 129059866 129060025 -30539758 + (CA)n Simple_repeat Simple_repeat 2 160 0 1 1569 209 171 0 0 chr3 129060110 129060145 -30539638 + C-rich Low_complexity Low_complexity 1 35 0 1 1569 342 260 0 103 chr3 129060217 129060324 -30539459 + PB1D7 SINE Alu 24 119 -1 1 1569 274 252 191 9 chr3 129060841 129060946 -30538837 + B1F SINE Alu 24 147 -2 1 1569 189 107 0 0 chr3 129060946 129060974 -30538809 + (CAAG)n Simple_repeat Simple_repeat 4 31 0 1 1569 732 186 0 0 chr3 129061605 129061782 -30538001 + (TG)n Simple_repeat Simple_repeat 1 177 0 1 1569 782 302 31 18 chr3 129061804 129062090 -30537693 - B4A SINE B4 -2 290 1 1 1569 567 0 0 0 chr3 129062420 129062483 -30537300 + (CA)n Simple_repeat Simple_repeat 1 63 0 1 1569 1198 68 0 0 chr3 129062605 129062751 -30537032 + B1_Mus2 SINE Alu 2 147 0 1 1569 597 196 0 0 chr3 129062766 129062868 -30536915 + B1_Mur1 SINE Alu 19 120 -29 1 1569 414 268 0 49 chr3 129063630 129063732 -30536051 - PB1D10 SINE Alu -2 115 19 1 1569 564 9 86 0 chr3 129063748 129063853 -30535930 + (CA)n Simple_repeat Simple_repeat 2 115 0 1 1569 233 81 15 46 chr3 129063855 129063920 -30535863 + (TTTTTG)n Simple_repeat Simple_repeat 2 64 0 1 1569 954 129 13 20 chr3 129063922 129064072 -30535711 - B1_Mur3 SINE Alu 0 149 1 1 1569 336 287 23 0 chr3 129064110 129064197 -30535586 - RSINE1 SINE B4 -29 136 48 1 1569 1137 128 83 0 chr3 129064556 129064736 -30535047 - B2_Mm2 SINE B2 0 195 1 1 1569 6453 64 10 10 chr3 129065303 129066111 -30533672 + RLTR13C2 LTR ERVK 1 808 0 1 1569 24 67 0 0 chr3 129066132 129066177 -30533606 + AT_rich Low_complexity Low_complexity 1 45 0 1 1569 263 233 113 28 chr3 129066798 129066904 -30532879 + MIR SINE MIR 30 144 -118 1 1569 322 239 0 0 chr3 129067290 129067357 -30532426 - MTD LTR MaLR 0 419 353 1 1569 2411 231 16 114 chr3 129067354 129068208 -30531575 - RMER17B LTR ERVK -187 771 1 1 1569 1057 268 81 19 chr3 129068208 129068511 -30531272 - MTD LTR MaLR -92 327 5 1 1569 2290 141 21 11 chr3 129069706 129070086 -30529697 - ORR1C2 LTR MaLR 0 384 1 1 1569 472 169 0 0 chr3 129070685 129070756 -30529027 + RLTR40 LTR ERVK 2 72 -745 1 1569 514 109 116 32 chr3 129070740 129070835 -30528948 - MTC LTR MaLR -318 103 1 1 1569 338 314 117 15 chr3 129070936 129071133 -30528650 + MIR SINE MIR 43 259 -3 1 1569 2250 200 44 86 chr3 129071512 129072108 -30527675 - RMER20B LTR ERVK -13 614 44 1 1569 235 301 14 14 chr3 129073166 129073240 -30526543 - ID_B1 SINE B4 -72 152 79 1 1569 675 279 11 22 chr3 129073315 129073498 -30526285 + B3A SINE B2 2 182 -16 1 1569 249 257 65 39 chr3 129074249 129074326 -30525457 - ORR1E LTR MaLR -275 84 6 1 1569 257 357 14 28 chr3 129074682 129074898 -30524885 - B3 SINE B2 0 216 4 1 1569 3174 63 41 10 chr3 129075052 129075469 -30524314 - L1Md_F2 LINE L1 0 6582 6153 1 1569 551 27 0 0 chr3 129075469 129075543 -30524240 + L1_Mm LINE L1 1669 1742 -4141 1 1569 245 347 0 48 chr3 129075653 129075756 -30524027 - MIRb SINE MIR -74 194 97 1 1569 704 167 41 8 chr3 129076527 129076648 -30523135 - B1_Mur2 SINE Alu -18 131 7 1 1569 475 266 9 27 chr3 129077597 129077709 -30522074 - ORR1E LTR MaLR -243 116 7 1 1569 21 0 0 0 chr3 129078624 129078645 -30521138 + AT_rich Low_complexity Low_complexity 1 21 0 1 1569 957 103 52 0 chr3 129078853 129078989 -30520794 + B1_Mus1 SINE Alu 6 148 0 1 1569 537 58 0 0 chr3 129079020 129079089 -30520694 + (GGAA)n Simple_repeat Simple_repeat 4 72 0 1 1569 343 324 59 0 chr3 129079236 129079338 -30520445 + B1F1 SINE Alu 3 110 -39 1 1569 247 322 31 118 chr3 129079244 129079473 -30520310 + MT2B LTR ERVL 175 383 -218 1 1569 324 336 54 39 chr3 129079338 129079366 -30520417 + ID_B1 SINE B4 84 215 -9 1 1569 771 259 176 9 chr3 129079412 129079737 -30520046 + MTEb LTR MaLR 1 379 0 1 1569 619 141 0 0 chr3 129079752 129079844 -30519939 - MTC LTR MaLR 0 421 330 1 1569 1296 81 23 0 chr3 129080324 129080497 -30519286 - B2_Mm2 SINE B2 -14 181 5 1 1569 1968 178 101 0 chr3 129080547 129080912 -30518871 - MTC LTR MaLR -19 402 1 1 1569 417 293 63 29 chr3 129080954 129081193 -30518590 - RMER17C LTR ERVK -68 342 96 1 1569 251 50 0 48 chr3 129081224 129081266 -30518517 + (CAGAGA)n Simple_repeat Simple_repeat 2 41 0 1 1569 372 232 87 72 chr3 129081272 129081537 -30518246 - RMER17C LTR ERVK -141 269 1 1 1569 560 274 25 25 chr3 129081537 129081697 -30518086 + MLT1E2 LTR MaLR 363 522 -105 1 1569 426 352 24 12 chr3 129081698 129081862 -30517921 + MER2B DNA MER2_type 171 336 0 1 1569 631 298 77 19 chr3 129082441 129082650 -30517133 + B4A SINE B4 4 224 -68 1 1569 318 132 0 0 chr3 129082660 129082713 -30517070 + (AGGGGG)n Simple_repeat Simple_repeat 3 55 0 1 1569 334 312 0 11 chr3 129082758 129082852 -30516931 + (CA)n Simple_repeat Simple_repeat 2 94 0 1 1569 394 235 217 0 chr3 129082871 129082986 -30516797 + B1F SINE Alu 9 148 -1 1 1569 477 0 0 0 chr3 129083000 129083053 -30516730 + (TG)n Simple_repeat Simple_repeat 2 54 0 1 1569 280 304 11 21 chr3 129083993 129084087 -30515696 + MLT1J LTR MaLR 416 508 -4 1 1569 371 339 39 8 chr3 129085335 129085463 -30514320 - RSINE1 SINE B4 -25 140 9 1 1569 331 253 205 60 chr3 129085466 129085651 -30514132 - L1MEc LINE L1 -4748 1652 1441 1 1569 1239 71 0 0 chr3 129085654 129086169 -30513614 + (TCC)n Simple_repeat Simple_repeat 1 515 0 1 1569 243 0 0 0 chr3 129086170 129086197 -30513586 + (CAT)n Simple_repeat Simple_repeat 2 28 0 1 1569 226 271 68 54 chr3 129086231 129086305 -30513478 - ID4_ SINE ID -6 77 3 1 1569 2291 190 12 7 chr3 129086348 129086767 -30513016 - MTC LTR MaLR 0 421 1 1 1569 3630 204 44 90 chr3 129087180 129087830 -30511953 + RMER13A LTR ERVK 2 635 -225 1 1569 2248 86 83 3 chr3 129087830 129088157 -30511626 + IAPEY2_LTR LTR ERVK 1 353 -4 1 1569 3630 204 44 90 chr3 129088157 129088406 -30511377 + RMER13A LTR ERVK 636 860 0 1 1569 3334 160 111 66 chr3 129088542 129089410 -30510373 + RMER1B Other Other 5 1060 -6 1 1569 259 269 43 69 chr3 129089749 129089865 -30509918 - MIRc SINE MIR -66 202 90 1 1569 366 340 112 36 chr3 129089943 129090043 -30509740 - MT2A LTR ERVL -286 247 149 1 1569 635 229 108 119 chr3 129090043 129090414 -30509369 + RLTR9A LTR ERVK 2 368 0 1 1569 366 340 112 36 chr3 129090414 129090472 -30509311 - MT2A LTR ERVL -385 148 67 1 1569 2047 119 6 89 chr3 129090472 129090831 -30508952 + ORR1A4 LTR MaLR 1 329 0 1 1569 366 340 112 36 chr3 129090831 129090894 -30508889 - MT2A LTR ERVL -467 66 9 1 1569 306 360 46 7 chr3 129090939 129091090 -30508693 + L1M5 LINE L1 5216 5372 -774 1 1569 210 71 0 0 chr3 129092577 129092605 -30507178 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 1 1569 3304 208 159 123 chr3 129092727 129093184 -30506599 + Lx6 LINE L1 6109 6621 -839 1 1569 437 176 253 0 chr3 129093184 129093275 -30506508 + URR1B DNA MER1_type 1 114 -111 1 1569 3304 208 159 123 chr3 129093275 129093872 -30505911 + Lx6 LINE L1 6622 7294 -166 1 1569 705 56 0 0 chr3 129093872 129093962 -30505821 + (GA)n Simple_repeat Simple_repeat 1 90 0 1 1569 1368 142 18 18 chr3 129094326 129094549 -30505234 - URR1A DNA MER1_type -2 224 2 1 1569 286 227 13 108 chr3 129094695 129094853 -30504930 + RMER17C LTR ERVK 180 322 -88 1 1569 3688 137 63 26 chr3 129095760 129096560 -30503223 + RMER17A2 LTR ERVK 1 906 0 1 1569 336 304 112 35 chr3 129096585 129096737 -30503046 + MIRb SINE MIR 2 156 -112 1 1569 3385 41 10 0 chr3 129096737 129097129 -30502654 - MTA_Mm LTR MaLR 0 396 1 1 1569 281 328 124 36 chr3 129097129 129097196 -30502587 + MIR SINE MIR 155 229 -33 1 1569 1260 88 21 32 chr3 129097301 129097488 -30502295 + B2_Mm2 SINE B2 2 186 -9 1 1569 568 31 0 0 chr3 129097620 129097684 -30502099 + L1Md_T LINE L1 5523 5586 -297 1 1569 8556 38 1 0 chr3 129097684 129098679 -30501104 + L1Md_T LINE L1 5587 6582 0 1 1569 216 0 0 0 chr3 129098736 129098760 -30501023 + (A)n Simple_repeat Simple_repeat 1 24 0 1 1569 1081 73 0 7 chr3 129098770 129098908 -30500875 + B1_Mm SINE Alu 1 137 -10 1 1569 402 21 0 0 chr3 129098909 129098956 -30500827 + (CAAAA)n Simple_repeat Simple_repeat 5 51 0 1 1569 270 328 44 15 chr3 129099155 129099291 -30500492 + CYRA11_Mm Unknown Y-chromosome 168 307 -310 1 1569 731 154 23 0 chr3 129099170 129099300 -30500483 - URR1B DNA MER1_type -12 213 81 1 1569 218 229 21 0 chr3 129099634 129099682 -30500101 - ID4_ SINE ID -27 56 8 1 1569 2383 153 67 8 chr3 129099797 129100199 -30499584 + RLTR28B LTR ERVL 1 426 -55 2 1569 4248 102 34 52 chr3 129100861 129101537 -30498246 + Lx2 LINE L1 6334 6997 0 2 1569 3407 56 25 0 chr3 129101869 129102300 -30497483 - L1Md_F2 LINE L1 0 6582 6141 2 1569 1500 63 16 0 chr3 129102628 129102818 -30496965 - B2_Mm2 SINE B2 -1 194 2 2 1569 463 223 0 11 chr3 129102922 129103017 -30496766 - RMER15 LTR ERVL 0 575 482 2 1569 1332 160 132 18 chr3 129103021 129103301 -30496482 - ORR1A4 LTR MaLR -16 313 2 2 1569 198 0 0 0 chr3 129103333 129103355 -30496428 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 2 1569 547 168 59 171 chr3 129103355 129103542 -30496241 - Lx4B LINE L1 -12 7046 6881 2 1569 2008 211 109 17 chr3 129103542 129104020 -30495763 - RMER15 LTR ERVL -53 522 1 2 1569 849 172 14 14 chr3 129105106 129105253 -30494530 + B1_Mur3 SINE Alu 2 148 -1 2 1569 505 264 183 21 chr3 129105325 129105511 -30494272 - B3 SINE B2 0 216 1 2 1569 183 395 0 0 chr3 129105754 129105840 -30493943 - L2 LINE L2 -535 2884 2799 2 196 370 321 63 119 chr3 129105849 129106046 -30493737 + B4A SINE B4 4 189 -103 2 1570 4336 63 50 30 chr3 129106046 129106621 -30493162 - LTRIS_Mus LTR ERV1 0 587 1 2 1570 370 321 63 119 chr3 129106621 129106709 -30493074 + B4A SINE B4 190 273 -19 2 1570 229 340 9 45 chr3 129106845 129106956 -30492827 + B4A SINE B4 81 187 -105 2 1570 198 281 31 0 chr3 129107049 129107113 -30492670 + MIR SINE MIR 166 231 -31 2 1570 524 332 146 14 chr3 129107181 129107468 -30492315 + MLT2D LTR ERVL 42 366 -48 2 1570 210 37 0 0 chr3 129107888 129107915 -30491868 + (TG)n Simple_repeat Simple_repeat 1 27 0 2 1570 203 103 51 0 chr3 129107924 129107963 -30491820 + (CA)n Simple_repeat Simple_repeat 2 42 0 2 1570 299 306 0 0 chr3 129108523 129108595 -30491188 + PB1D10 SINE Alu 1 72 -45 2 1570 461 263 25 38 chr3 129108664 129108822 -30490961 + B4 SINE B4 6 161 -131 2 1570 282 270 0 26 chr3 129109508 129109584 -30490199 + MER45A DNA Tip100 58 131 -47 2 1570 241 325 13 0 chr3 129109562 129109639 -30490144 - ID4 SINE ID -1 82 5 2 1570 2589 71 3 0 chr3 129109639 129109965 -30489818 + ORR1A2 LTR MaLR 1 327 0 2 1570 180 0 0 0 chr3 129110410 129110430 -30489353 + (TTAGG)n Simple_repeat Simple_repeat 4 23 0 2 1570 758 309 21 0 chr3 129110657 129110845 -30488938 + MTE2b LTR MaLR 1 192 -187 2 1570 911 139 0 0 chr3 129110833 129110970 -30488813 + B1_Mur4 SINE Alu 13 149 -1 2 1570 195 204 0 0 chr3 129110970 129111014 -30488769 + GA-rich Low_complexity Low_complexity 2 45 0 2 1570 464 273 80 29 chr3 129111014 129111158 -30488625 + MTE2b LTR MaLR 163 313 -66 2 1570 327 327 111 25 chr3 129111235 129111470 -30488313 + L1ME2 LINE L1 5791 6045 -119 2 1570 183 156 0 0 chr3 129111605 129111637 -30488146 + G-rich Low_complexity Low_complexity 1 32 0 2 1570 456 19 0 0 chr3 129112112 129112165 -30487618 + (TTCC)n Simple_repeat Simple_repeat 4 56 0 2 1570 252 0 0 0 chr3 129112165 129112193 -30487590 + (TC)n Simple_repeat Simple_repeat 2 29 0 2 1570 596 174 26 17 chr3 129112254 129112371 -30487412 - PB1D9 SINE Alu -1 119 2 2 1570 921 210 28 23 chr3 129113116 129113331 -30486452 - B3 SINE B2 0 216 1 2 1570 448 293 39 86 chr3 129113514 129113794 -30485989 - MTC-int LTR MaLR -987 271 5 2 1570 473 353 21 5 chr3 129113855 129114043 -30485740 - MT2A LTR ERVL -135 398 208 2 1570 21 0 0 0 chr3 129114191 129114212 -30485571 + AT_rich Low_complexity Low_complexity 1 21 0 2 1570 992 187 24 19 chr3 129114216 129114429 -30485354 - B3 SINE B2 -2 214 1 2 1570 578 89 0 11 chr3 129114973 129115064 -30484719 + (TAGA)n Simple_repeat Simple_repeat 4 93 0 2 1570 365 288 0 27 chr3 129115359 129115509 -30484274 + C-rich Low_complexity Low_complexity 2 147 0 2 1570 473 333 6 0 chr3 129115865 129116030 -30483753 + L1MD LINE L1 5552 5717 -642 2 1570 180 0 0 0 chr3 129116338 129116358 -30483425 + (CA)n Simple_repeat Simple_repeat 2 21 0 2 1570 403 240 86 9 chr3 129116364 129116469 -30483314 - B3 SINE B2 0 216 104 2 1570 251 257 8 92 chr3 129116516 129116600 -30483183 + L1MC4a LINE L1 7742 7817 -65 2 1570 2385 68 11 69 chr3 129116600 129116947 -30482836 + ORR1A2 LTR MaLR 1 327 0 2 1570 251 257 8 92 chr3 129116947 129116982 -30482801 + L1MC4a LINE L1 7818 7850 -32 2 1570 180 0 0 0 chr3 129117013 129117033 -30482750 + (GAAA)n Simple_repeat Simple_repeat 1 20 0 2 1570 331 215 38 0 chr3 129117422 129117501 -30482282 + PB1D10 SINE Alu 21 102 -15 2 1570 259 245 6 37 chr3 129117505 129117666 -30482117 + GA-rich Low_complexity Low_complexity 1 156 0 2 1570 454 273 30 24 chr3 129117932 129118097 -30481686 - Tigger5 DNA MER2_type -92 2314 2149 2 1570 692 273 58 39 chr3 129118086 129118110 -30481673 - Tigger5 DNA MER2_type -2142 264 241 2 1570 3441 134 51 39 chr3 129118110 129118701 -30481082 - MT2B LTR ERVL 0 601 4 2 1570 701 273 58 39 chr3 129118701 129118935 -30480848 - Tigger5 DNA MER2_type -2166 240 1 2 1570 19100 71 14 6 chr3 129119651 129123951 -30475832 - L1Md_F2 LINE L1 -11 6571 480 2 1570 527 90 39 0 chr3 129123951 129124029 -30475754 - L1VL1 LINE L1 -6156 266 186 2 1570 297 0 0 0 chr3 129124099 129124132 -30475651 + (TG)n Simple_repeat Simple_repeat 1 33 0 2 1570 513 32 0 0 chr3 129124132 129124194 -30475589 + (GA)n Simple_repeat Simple_repeat 1 63 0 2 1570 546 223 40 51 chr3 129124196 129124371 -30475412 - B3 SINE B2 -43 173 1 2 1570 288 0 0 0 chr3 129124547 129124579 -30475204 + (T)n Simple_repeat Simple_repeat 1 32 0 2 1570 1276 34 0 0 chr3 129124579 129124726 -30475057 - B1_Mm SINE Alu 0 147 1 2 1570 181 360 0 11 chr3 129125558 129125645 -30474138 - L2a LINE L2 -5 3421 3336 2 1570 3011 85 0 34 chr3 129125794 129126208 -30473575 + MTB LTR MaLR 1 400 0 2 1570 607 312 26 116 chr3 129126226 129126650 -30473133 + MLT1C LTR MaLR 13 398 -69 2 1570 619 192 23 6 chr3 129127238 129127411 -30472372 + CT-rich Low_complexity Low_complexity 3 178 0 2 1570 823 164 128 31 chr3 129127575 129127770 -30472013 - B3 SINE B2 0 216 3 2 1570 180 0 0 0 chr3 129127781 129127801 -30471982 + (A)n Simple_repeat Simple_repeat 1 20 0 2 1570 873 129 13 39 chr3 129127819 129127972 -30471811 + B1_Mur4 SINE Alu 1 149 -1 2 1570 738 190 7 14 chr3 129128202 129128346 -30471437 - Lx8 LINE L1 -268 7205 7063 2 1570 313 274 27 0 chr3 129128399 129128472 -30471311 + PB1D7 SINE Alu 41 115 -5 2 1570 240 253 11 46 chr3 129128481 129128568 -30471215 + GA-rich Low_complexity Low_complexity 4 87 0 2 1570 193 227 8 40 chr3 129128705 129128829 -30470954 + A-rich Low_complexity Low_complexity 3 122 0 2 1570 726 236 0 0 chr3 129129179 129129323 -30470460 + B1_Mur2 SINE Alu 5 148 -1 2 1570 349 239 91 33 chr3 129129526 129129647 -30470136 - B1F SINE Alu 0 149 22 2 1570 793 129 14 0 chr3 129129691 129129830 -30469953 + (GGA)n Simple_repeat Simple_repeat 3 143 0 2 1570 566 304 6 17 chr3 129129832 129130009 -30469774 - B4 SINE B4 -117 175 1 2 1570 280 274 16 117 chr3 129130586 129130714 -30469069 - MER33 DNA MER1_type -56 153 2 2 1570 371 302 17 0 chr3 129130771 129130887 -30468896 + ID_B1 SINE B4 82 199 -25 2 1570 817 277 35 39 chr3 129131149 129131247 -30468536 + B4 SINE B4 2 94 -198 2 1570 703 114 22 15 chr3 129131247 129131381 -30468402 - Lx LINE L1 0 6654 6520 2 1570 817 277 35 39 chr3 129131381 129131511 -30468272 + B4 SINE B4 95 229 -63 2 1570 775 119 16 43 chr3 129131596 129131781 -30468002 + GA-rich Low_complexity Low_complexity 1 180 0 2 1570 207 88 0 0 chr3 129132565 129132599 -30467184 + (A)n Simple_repeat Simple_repeat 1 34 0 2 1570 21 0 0 0 chr3 129132687 129132708 -30467075 + AT_rich Low_complexity Low_complexity 1 21 0 2 1570 884 171 20 0 chr3 129132709 129132855 -30466928 - B1_Mur4 SINE Alu -1 149 1 2 1570 284 229 24 0 chr3 129132967 129133050 -30466733 - Lx6 LINE L1 -7 7453 7369 2 1570 567 244 39 0 chr3 129133134 129133261 -30466522 + ID_B1 SINE B4 86 217 -7 2 1570 1028 91 0 7 chr3 129133267 129133422 -30466361 + (GGGAGA)n Simple_repeat Simple_repeat 3 156 0 2 1570 582 156 108 29 chr3 129134000 129134139 -30465644 + Lx5 LINE L1 6901 7050 0 2 1570 329 286 50 33 chr3 129134336 129134460 -30465323 - L1M4c LINE L1 -2639 4206 4079 2 1570 1900 115 82 3 chr3 129134460 129134765 -30465018 + ORR1A4 LTR MaLR 1 329 0 2 1570 329 286 50 33 chr3 129134765 129134821 -30464962 - L1M4c LINE L1 -2767 4078 4023 2 1570 1112 308 82 21 chr3 129134901 129135426 -30464357 - L1M4c LINE L1 -3271 3574 3018 2 1570 576 254 6 1 chr3 129135429 129135567 -30464216 - B1_Mur1 SINE Alu -5 144 2 2 1570 312 261 36 24 chr3 129135576 129135741 -30464042 - L1M4c LINE L1 -3911 2934 2757 2 1570 698 260 66 42 chr3 129135892 129136196 -30463587 - Lx8 LINE L1 -1714 5982 5630 2 1570 198 0 0 0 chr3 129136196 129136218 -30463565 + (TG)n Simple_repeat Simple_repeat 2 23 0 2 1570 698 292 112 49 chr3 129136218 129136503 -30463280 - Lx8 LINE L1 -218 5629 5328 2 1570 367 235 0 73 chr3 129137890 129138000 -30461783 - L1M2 LINE L1 -896 5395 5294 2 1570 4322 71 12 12 chr3 129138006 129138592 -30461191 - L1_Mus3 LINE L1 0 6638 6053 2 1570 660 313 93 37 chr3 129138592 129139053 -30460730 - L1M2 LINE L1 -943 5200 4714 2 1570 958 71 14 0 chr3 129139765 129139905 -30459878 + (TCC)n Simple_repeat Simple_repeat 1 142 0 2 1570 381 22 0 0 chr3 129139926 129139972 -30459811 + (TTTTG)n Simple_repeat Simple_repeat 2 47 0 2 1570 507 92 0 0 chr3 129139975 129140051 -30459732 - B1_Mur4 SINE Alu -13 137 62 2 1570 22 35 0 0 chr3 129140395 129140424 -30459359 + AT_rich Low_complexity Low_complexity 1 29 0 2 1570 1277 272 44 32 chr3 129141322 129141850 -30457933 + RMER5 LTR ERV1 1 534 0 2 1570 352 202 13 36 chr3 129141859 129141953 -30457830 - ORR1E LTR MaLR -28 351 264 2 1570 363 188 45 38 chr3 129142030 129142129 -30457654 - ORR1E LTR MaLR -277 97 1 2 1570 245 350 20 20 chr3 129142131 129142233 -30457550 - ORR1E LTR MaLR -214 145 44 2 1570 483 296 86 65 chr3 129142914 129143253 -30456530 + MLT2B4 LTR ERVL 1 346 -210 2 1570 458 251 68 21 chr3 129143580 129143771 -30456012 + RMER15 LTR ERVL 363 562 -13 2 1570 442 70 28 0 chr3 129143807 129143878 -30455905 + (CA)n Simple_repeat Simple_repeat 1 73 0 2 1570 1586 215 59 8 chr3 129144670 129145026 -30454757 + ORR1D1 LTR MaLR 1 374 0 3 1570 180 176 0 0 chr3 129145115 129145149 -30454634 + (CATATA)n Simple_repeat Simple_repeat 3 36 0 3 1570 956 107 67 0 chr3 129145199 129145349 -30454434 + B2_Mm2 SINE B2 2 161 -34 3 1570 387 0 0 0 chr3 129145349 129145392 -30454391 + (TAAA)n Simple_repeat Simple_repeat 3 45 0 3 1570 952 260 93 69 chr3 129146455 129146905 -30452878 - L1MC1 LINE L1 -179 6154 5694 3 1570 276 309 18 0 chr3 129146918 129147028 -30452755 - L1MC1 LINE L1 -758 5575 5464 3 1570 243 0 0 0 chr3 129149353 129149380 -30450403 + (A)n Simple_repeat Simple_repeat 1 27 0 3 1570 735 144 67 67 chr3 129150346 129150495 -30449288 + B1_Mur3 SINE Alu 1 149 0 3 1570 638 52 25 33 chr3 129150518 129150638 -30449145 + (GAGAA)n Simple_repeat Simple_repeat 2 120 0 3 1570 359 0 43 0 chr3 129150806 129150852 -30448931 + (CAAAA)n Simple_repeat Simple_repeat 2 49 0 3 1570 441 36 0 0 chr3 129151069 129151124 -30448659 + (TG)n Simple_repeat Simple_repeat 2 56 0 3 1570 3523 106 2 40 chr3 129152014 129152594 -30447189 + RMER2 LTR ERV1 10 567 0 3 1570 386 299 74 82 chr3 129152719 129152963 -30446820 + MTEa LTR MaLR 107 348 -31 3 1570 745 250 94 5 chr3 129153089 129153290 -30446493 + ID_B1 SINE B4 1 219 -5 3 1570 840 179 0 27 chr3 129153337 129153486 -30446297 + B1_Mus2 SINE Alu 2 146 -1 3 1570 262 333 193 12 chr3 129154388 129154637 -30445146 + MER74A LTR ERVL 139 432 -126 3 1570 515 253 92 46 chr3 129154989 129155018 -30444765 + B3A SINE B2 1 27 -171 3 1570 210 37 0 0 chr3 129155018 129155045 -30444738 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3 1570 515 253 92 46 chr3 129155045 129155189 -30444594 + B3A SINE B2 28 182 -16 3 1570 323 44 22 0 chr3 129155206 129155251 -30444532 + (TA)n Simple_repeat Simple_repeat 2 47 0 3 1570 699 319 45 15 chr3 129155251 129155518 -30444265 + MTE2b LTR MaLR 44 318 -61 3 1570 651 254 22 92 chr3 129155518 129155852 -30443931 + ORR1D1 LTR MaLR 1 298 -72 3 1570 545 111 15 146 chr3 129156342 129156479 -30443304 - B1_Mur3 SINE Alu 0 149 31 3 1570 594 238 16 8 chr3 129156677 129156800 -30442983 + B1_Mur1 SINE Alu 21 144 -5 3 1570 920 135 0 22 chr3 129156800 129156952 -30442831 + GA-rich Low_complexity Low_complexity 3 150 0 3 1570 1540 0 0 11 chr3 129156952 129157134 -30442649 + (GAA)n Simple_repeat Simple_repeat 1 180 0 3 1570 920 135 0 22 chr3 129157134 129157163 -30442620 + polypurine Low_complexity Low_complexity 151 179 0 3 1570 228 167 0 0 chr3 129157198 129157246 -30442537 + (CGAA)n Simple_repeat Simple_repeat 2 49 0 3 1570 3876 54 19 0 chr3 129157903 129158368 -30441415 + MT2C_Mm LTR ERVL 1 474 -1 3 1570 935 222 24 10 chr3 129158373 129158578 -30441205 + MERVL_2A-int LTR ERVL 5 212 -5549 3 1570 36797 108 33 2 chr3 129158699 129163758 -30436025 + MERVL_2A-int LTR ERVL 413 5629 -132 3 1570 320 119 0 33 chr3 129163758 129163819 -30435964 + ORR1A3-int LTR MaLR 567 625 -1338 3 1570 543 31 0 0 chr3 129163820 129163885 -30435898 + MERVL-int LTR ERVL 5421 5485 0 3 1570 3916 49 19 0 chr3 129163885 129164351 -30435432 + MT2C_Mm LTR ERVL 1 475 0 3 1570 186 43 0 0 chr3 129165707 129165730 -30434053 + (A)n Simple_repeat Simple_repeat 1 23 0 3 1570 239 302 111 30 chr3 129165742 129165841 -30433942 + B1F2 SINE Alu 2 108 -41 3 1570 974 55 20 46 chr3 129165863 129165881 -30433902 + B1_Mus1 SINE Alu 1 18 -130 3 1570 2093 142 3 0 chr3 129165881 129166191 -30433592 + RLTR10E LTR ERVK 1 311 0 3 1570 974 55 20 46 chr3 129166191 129166324 -30433459 + B1_Mus1 SINE Alu 19 148 0 3 1570 216 0 0 0 chr3 129166338 129166362 -30433421 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 3 1570 2754 73 10 25 chr3 129167791 129168197 -30431586 + MTB_Mm LTR MaLR 8 407 0 3 1570 1380 40 0 70 chr3 129168255 129168442 -30431341 + B2_Mm1a SINE B2 1 174 -19 3 1570 339 236 146 0 chr3 129168593 129168682 -30431101 + PB1D7 SINE Alu 11 112 -8 3 1570 217 377 0 0 chr3 129168686 129168763 -30431020 + ID2 SINE ID 2 78 -5 3 1570 681 148 78 0 chr3 129168807 129168922 -30430861 - B3 SINE B2 -92 124 1 3 1570 258 32 0 0 chr3 129169475 129169506 -30430277 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 3 1570 222 37 0 0 chr3 129169598 129169625 -30430158 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 3 1570 880 48 39 8 chr3 129170053 129170180 -30429603 - B1_Mus2 SINE Alu -14 133 3 3 1570 3751 21 19 5 chr3 129170611 129171041 -30428742 + RLTR10C LTR ERVK 1 436 0 3 1570 3324 160 29 44 chr3 129171102 129171716 -30428067 - RLTR1D LTR ERV1 0 605 1 3 1570 609 239 36 22 chr3 129171717 129171854 -30427929 + B1F1 SINE Alu 1 139 -10 3 1570 3126 78 4 36 chr3 129171950 129172428 -30427355 + RMER16 LTR ERVK 71 533 0 3 1570 244 241 150 12 chr3 129172678 129172758 -30427025 - B4A SINE B4 -18 274 184 3 1570 508 266 20 50 chr3 129172792 129172990 -30426793 - RLTR23 LTR ERV1 0 430 239 3 1570 458 179 111 19 chr3 129173155 129173263 -30426520 - RLTR23 LTR ERV1 -305 125 8 3 1570 312 340 0 9 chr3 129173308 129173418 -30426365 - B4A SINE B4 -183 109 1 3 1570 1424 65 22 0 chr3 129173441 129173625 -30426158 + B2_Mm2 SINE B2 2 189 -6 3 1570 345 125 0 0 chr3 129174006 129174062 -30425721 + (CA)n Simple_repeat Simple_repeat 2 57 0 3 1570 519 134 25 0 chr3 129174199 129174318 -30425465 + CT-rich Low_complexity Low_complexity 1 122 0 3 1570 559 239 0 0 chr3 129174643 129174752 -30425031 - RSINE1 SINE B4 -52 113 5 3 1570 2415 75 25 0 chr3 129175643 129175961 -30423822 - ORR1A2 LTR MaLR -1 326 1 3 1570 266 261 44 22 chr3 129175990 129176080 -30423703 - B1F SINE Alu -21 128 37 3 1570 341 325 61 65 chr3 129176108 129176355 -30423428 - MLT1F LTR MaLR -99 449 204 3 1570 769 239 6 18 chr3 129176983 129177149 -30422634 + B3 SINE B2 1 164 -52 3 1570 396 349 6 34 chr3 129177328 129177503 -30422280 - MT2A LTR ERVL -153 380 211 3 1570 2602 157 37 25 chr3 129177533 129178048 -30421735 + RLTR17 LTR ERVK 98 618 -74 3 1570 369 284 18 44 chr3 129178253 129178367 -30421416 + PB1D10 SINE Alu 1 111 -6 3 1570 2687 153 22 24 chr3 129178402 129178585 -30421198 + RLTR19 LTR ERVK 5 185 -314 3 1570 230 0 0 32 chr3 129178585 129178616 -30421167 + (TTAA)n Simple_repeat Simple_repeat 1 30 0 3 1570 2687 153 22 24 chr3 129178616 129178928 -30420855 + RLTR19 LTR ERVK 186 499 0 3 1570 282 160 0 0 chr3 129178928 129178978 -30420805 + (ATG)n Simple_repeat Simple_repeat 2 51 0 3 1570 313 263 0 40 chr3 129179193 129179292 -30420491 - B1F1 SINE Alu 0 149 55 3 1570 225 178 0 0 chr3 129179408 129179453 -30420330 + (TCCA)n Simple_repeat Simple_repeat 1 45 0 3 1570 1731 149 144 9 chr3 129179550 129179751 -30420032 - ORR1B1 LTR MaLR 0 394 184 3 1570 225 0 0 0 chr3 129179751 129179776 -30420007 + (TG)n Simple_repeat Simple_repeat 2 26 0 3 1570 1731 149 144 9 chr3 129179776 129179920 -30419863 - ORR1B1 LTR MaLR -211 183 3 3 1570 350 301 31 31 chr3 129179940 129180067 -30419716 - B1F2 SINE Alu -8 141 15 3 1570 900 174 0 20 chr3 129180195 129180347 -30419436 + B1_Mur3 SINE Alu 1 149 0 3 1570 309 328 39 19 chr3 129180453 129180658 -30419125 - L1MEf LINE L1 -4309 1891 1683 3 1570 21 0 0 0 chr3 129180750 129180771 -30419012 + AT_rich Low_complexity Low_complexity 1 21 0 3 1570 671 181 26 0 chr3 129181690 129181806 -30417977 - B1_Mur1 SINE Alu -14 135 17 3 1570 250 310 94 8 chr3 129181710 129181827 -30417956 - B4A SINE B4 -87 205 79 3 1570 488 239 0 134 chr3 129182010 129182174 -30417609 + B3 SINE B2 64 205 -11 3 1570 259 258 108 43 chr3 129182209 129182302 -30417481 + PB1D10 SINE Alu 17 115 -2 3 1570 180 111 0 0 chr3 129182304 129182331 -30417452 + (GGAGAA)n Simple_repeat Simple_repeat 6 32 0 3 1570 313 244 54 22 chr3 129182430 129182522 -30417261 + MER57F LTR ERV1 335 429 -7 3 1570 1033 209 257 18 chr3 129183604 129183931 -30415852 - MTD LTR MaLR -14 405 1 3 1570 35 54 0 0 chr3 129184091 129184147 -30415636 + AT_rich Low_complexity Low_complexity 1 56 0 3 1570 384 207 33 75 chr3 129184464 129184584 -30415199 - PB1D10 SINE Alu -1 116 2 3 1570 375 237 0 0 chr3 129185543 129185720 -30414063 + (TG)n Simple_repeat Simple_repeat 2 178 0 3 1570 261 118 0 0 chr3 129185717 129185768 -30414015 + (TCTCTG)n Simple_repeat Simple_repeat 6 56 0 3 1570 252 353 73 19 chr3 129186491 129186696 -30413087 + L2c LINE L2 2970 3185 -202 3 1570 22 0 0 0 chr3 129186863 129186885 -30412898 + AT_rich Low_complexity Low_complexity 1 22 0 3 1570 789 163 21 7 chr3 129186900 129187042 -30412741 - B1_Mur4 SINE Alu -3 147 4 3 1570 27 0 0 0 chr3 129187129 129187156 -30412627 + AT_rich Low_complexity Low_complexity 1 27 0 3 1570 1135 274 59 18 chr3 129187174 129187512 -30412271 - Lx7 LINE L1 -288 7408 7057 3 1570 1772 184 60 66 chr3 129187514 129187984 -30411799 + Lx8 LINE L1 5028 5494 -386 3 1570 731 245 28 38 chr3 129188015 129188304 -30411479 + RLTR15 LTR ERVK 1 286 -73 3 1570 868 226 103 48 chr3 129188367 129188663 -30411120 + Lx8 LINE L1 5531 5855 -1618 3 1570 205 170 43 0 chr3 129188962 129189009 -30410774 + T-rich Low_complexity Low_complexity 5 53 0 3 1570 570 259 0 0 chr3 129189024 129189140 -30410643 - PB1D7 SINE Alu -4 116 1 3 1570 1255 88 21 27 chr3 129189195 129189223 -30410560 - B2_Mm2 SINE B2 -9 186 159 3 1570 282 56 0 0 chr3 129189223 129189259 -30410524 + (ATTG)n Simple_repeat Simple_repeat 2 37 0 3 1570 1255 88 21 27 chr3 129189259 129189417 -30410366 - B2_Mm2 SINE B2 -37 158 1 3 1570 1288 96 11 0 chr3 129189715 129189892 -30409891 + B2_Mm1t SINE B2 1 179 -14 3 1570 278 142 330 36 chr3 129189977 129190086 -30409697 + B2_Mm2 SINE B2 47 187 -8 3 1570 713 247 7 0 chr3 129190174 129190320 -30409463 - B1_Mur1 SINE Alu 0 149 3 3 1570 1378 291 40 32 chr3 129190350 129190875 -30408908 - Lx8 LINE L1 -141 7332 6804 3 1570 270 328 149 45 chr3 129190878 129191389 -30408394 - L1M2c LINE L1 -4825 1964 1401 3 1570 3377 64 8 106 chr3 129192319 129192544 -30407239 - MT2C_Mm LTR ERVL 0 475 286 3 1570 252 0 0 0 chr3 129192544 129192572 -30407211 + (TG)n Simple_repeat Simple_repeat 2 29 0 3 1570 3377 64 8 106 chr3 129192572 129192873 -30406910 - MT2C_Mm LTR ERVL -190 285 1 3 1570 807 261 2 7 chr3 129193142 129193330 -30406453 + B3 SINE B2 7 195 -3 4 1570 344 131 0 14 chr3 129193432 129193502 -30406281 + (TTTA)n Simple_repeat Simple_repeat 1 69 0 4 1570 400 139 42 0 chr3 129193579 129193651 -30406132 + B1_Mus2 SINE Alu 71 145 -2 4 1570 1131 101 0 0 chr3 129193662 129193810 -30405973 + B1_Mus1 SINE Alu 1 148 0 4 1570 567 78 0 0 chr3 129193817 129193894 -30405889 + (CAA)n Simple_repeat Simple_repeat 2 78 0 4 1570 1028 192 103 0 chr3 129193904 129194107 -30405676 - URR1A DNA MER1_type 0 226 3 4 1570 465 325 91 60 chr3 129194123 129194509 -30405274 + MT2A LTR ERVL 2 399 -134 4 1570 1119 37 0 0 chr3 129194534 129194670 -30405113 + (GGGAGA)n Simple_repeat Simple_repeat 6 141 0 4 1570 8066 52 0 2 chr3 129194805 129195844 -30403939 - L1Md_F2 LINE L1 -12 6570 5535 4 1570 1108 299 54 45 chr3 129195912 129196427 -30403356 - RMER5 LTR ERV1 0 534 15 4 1570 235 292 27 27 chr3 129196624 129196698 -30403085 + B1F1 SINE Alu 21 94 -55 4 1570 483 18 0 0 chr3 129196707 129196763 -30403020 + (GGAA)n Simple_repeat Simple_repeat 4 59 0 4 1570 466 69 0 0 chr3 129196763 129196821 -30402962 + (GA)n Simple_repeat Simple_repeat 1 58 0 4 1570 891 152 6 17 chr3 129196821 129197001 -30402782 + GA-rich Low_complexity Low_complexity 2 179 0 4 1570 323 297 62 8 chr3 129197205 129197334 -30402449 + ID_B1 SINE B4 89 224 0 4 1570 231 299 63 56 chr3 129197625 129197767 -30402016 - MER57F LTR ERV1 -18 418 276 4 1570 439 289 14 22 chr3 129197783 129197921 -30401862 + B1F SINE Alu 10 146 -3 4 1570 29 28 0 0 chr3 129198101 129198137 -30401646 + AT_rich Low_complexity Low_complexity 1 36 0 4 1570 1243 62 11 0 chr3 129198239 129198417 -30401366 + (TTGG)n Simple_repeat Simple_repeat 1 180 0 4 1570 239 241 0 0 chr3 129198479 129198533 -30401250 + B1F SINE Alu 67 120 -29 4 1570 460 14 27 53 chr3 129198610 129198685 -30401098 + L1Md_F3 LINE L1 6512 6584 0 4 1570 216 0 0 0 chr3 129198940 129198964 -30400819 + (TTTTTG)n Simple_repeat Simple_repeat 2 25 0 4 1570 1910 150 79 9 chr3 129199806 129200149 -30399634 - ORR1B2 LTR MaLR 0 367 1 4 1570 460 16 31 15 chr3 129200563 129200628 -30399155 + (CAAAA)n Simple_repeat Simple_repeat 2 67 0 4 1570 495 278 59 22 chr3 129201400 129201536 -30398247 + RSINE1 SINE B4 1 141 -24 4 1570 378 91 0 0 chr3 129201540 129201595 -30398188 + (CA)n Simple_repeat Simple_repeat 1 55 0 4 1570 609 83 0 0 chr3 129201595 129201679 -30398104 + (GA)n Simple_repeat Simple_repeat 1 84 0 4 1570 328 287 46 8 chr3 129201855 129201985 -30397798 + MER2 DNA MER2_type 109 243 -102 4 1570 404 288 18 0 chr3 129202055 129202166 -30397617 + PB1D10 SINE Alu 4 116 -1 4 1570 327 49 0 0 chr3 129202965 129203006 -30396777 + (GA)n Simple_repeat Simple_repeat 2 42 0 4 1570 414 0 0 0 chr3 129203006 129203052 -30396731 + (CATA)n Simple_repeat Simple_repeat 2 47 0 4 1570 398 180 169 0 chr3 129203078 129203167 -30396616 + B1_Mur4 SINE Alu 10 113 -37 4 1570 560 136 8 0 chr3 129203547 129203672 -30396111 + (TC)n Simple_repeat Simple_repeat 2 127 0 4 1570 435 241 6 10 chr3 129203672 129203775 -30396008 - PB1D10 SINE Alu -14 103 2 4 1570 545 221 68 99 chr3 129203795 129203986 -30395797 - MTD LTR MaLR -234 185 1 4 1570 623 277 92 54 chr3 129203986 129204390 -30395393 - L1M2 LINE L1 -924 5219 4805 4 1570 815 159 7 0 chr3 129204390 129204541 -30395242 + GA-rich Low_complexity Low_complexity 2 153 0 4 1570 268 284 80 0 chr3 129204935 129205023 -30394760 - MTEa LTR MaLR -4 375 281 4 1570 1346 96 32 0 chr3 129205202 129205389 -30394394 - B2_Mm1t SINE B2 0 193 1 4 1570 1538 260 56 27 chr3 129205722 129206240 -30393543 + MT2A LTR ERVL 1 533 0 4 1570 250 351 9 0 chr3 129206888 129207002 -30392781 - RLTR14-int LTR ERV1 -3145 2172 2058 4 1570 327 25 0 0 chr3 129207664 129207704 -30392079 + (TG)n Simple_repeat Simple_repeat 2 41 0 4 1570 600 14 0 0 chr3 129207789 129207858 -30391925 + (TTC)n Simple_repeat Simple_repeat 2 70 0 4 1570 330 45 0 0 chr3 129208690 129208734 -30391049 + (TA)n Simple_repeat Simple_repeat 2 45 0 4 1570 789 41 0 0 chr3 129209791 129209888 -30389895 + (GA)n Simple_repeat Simple_repeat 2 98 0 4 1570 448 213 29 41 chr3 129210883 129211054 -30388729 + G-rich Low_complexity Low_complexity 5 173 0 4 1570 200 121 114 0 chr3 129211055 129211204 -30388579 + (TGGA)n Simple_repeat Simple_repeat 2 167 0 4 1570 184 116 93 0 chr3 129211243 129211329 -30388454 + (TGGA)n Simple_repeat Simple_repeat 2 95 0 4 1570 201 186 48 29 chr3 129211338 129211443 -30388340 + (TGG)n Simple_repeat Simple_repeat 2 108 0 4 1570 429 205 53 29 chr3 129211398 129211612 -30388171 + G-rich Low_complexity Low_complexity 1 219 0 4 1570 722 173 237 23 chr3 129211958 129212135 -30387648 + B3 SINE B2 2 216 0 4 1570 1525 44 16 5 chr3 129212175 129212359 -30387424 + B2_Mm2 SINE B2 2 187 -8 4 1570 243 61 0 0 chr3 129212380 129212413 -30387370 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 4 1570 1136 58 0 0 chr3 129212415 129212552 -30387231 - B1_Mus1 SINE Alu -11 137 1 4 1570 430 258 11 0 chr3 129213593 129213682 -30386101 + RSINE1 SINE B4 32 121 -44 4 1570 659 98 0 0 chr3 129213683 129213775 -30386008 + 4.5SRNA scRNA scRNA 1 92 -2 4 1570 1097 35 6 70 chr3 129213776 129213932 -30385851 + B1_Mus1 SINE Alu 3 148 0 4 1570 261 0 0 0 chr3 129214029 129214058 -30385725 + (CA)n Simple_repeat Simple_repeat 2 30 0 4 1570 288 0 0 0 chr3 129214058 129214089 -30385694 + (GA)n Simple_repeat Simple_repeat 2 33 0 4 1570 402 283 19 88 chr3 129214093 129214252 -30385531 + B4A SINE B4 145 292 0 4 1570 787 75 8 8 chr3 129214361 129214482 -30385301 + (GA)n Simple_repeat Simple_repeat 2 122 0 4 1570 1226 14 14 0 chr3 129214991 129215137 -30384646 + B1_Mus1 SINE Alu 1 148 0 4 1570 311 22 65 0 chr3 129215137 129215183 -30384600 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 4 1570 286 282 24 0 chr3 129215559 129215644 -30384139 + (TCTA)n Simple_repeat Simple_repeat 2 88 0 4 1570 2377 180 114 62 chr3 129216160 129216740 -30383043 + RMER19C LTR ERVK 1 610 -1 4 1570 606 246 96 30 chr3 129216788 129216985 -30382798 - B3 SINE B2 -4 212 3 4 1570 1063 97 7 0 chr3 129217126 129217270 -30382513 + B1_Mus2 SINE Alu 1 145 -2 4 1570 296 48 24 0 chr3 129217270 129217312 -30382471 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 4 1570 757 56 0 0 chr3 129217618 129217725 -30382058 - B2_Mm1a SINE B2 -1 192 86 4 1570 501 97 0 0 chr3 129218375 129218447 -30381336 + (GA)n Simple_repeat Simple_repeat 1 72 0 4 1570 460 261 90 23 chr3 129218464 129218597 -30381186 - RSINE1 SINE B4 -22 143 2 4 1570 199 348 90 48 chr3 129218645 129218811 -30380972 - MIR SINE MIR -26 242 63 4 1570 706 252 47 43 chr3 129219303 129219514 -30380269 - B3 SINE B2 -1 215 4 4 1570 1313 107 16 0 chr3 129219556 129219743 -30380040 + B2_Mm2 SINE B2 2 191 -4 4 1570 349 230 0 0 chr3 129219764 129219838 -30379945 - ID4 SINE ID -1 82 9 4 1570 404 335 42 42 chr3 129219919 129220087 -30379696 - ID_B1 SINE B4 -56 168 1 4 1570 195 297 135 0 chr3 129220191 129220296 -30379487 + MIR SINE MIR 77 209 -59 4 1570 496 266 26 9 chr3 129220875 129220989 -30378794 + PB1D10 SINE Alu 1 116 -1 4 1570 632 234 62 42 chr3 129221584 129221776 -30378007 - B3A SINE B2 -2 196 1 4 1570 195 42 0 0 chr3 129221912 129221936 -30377847 + (CATA)n Simple_repeat Simple_repeat 1 24 0 4 1570 768 314 73 24 chr3 129221939 129222392 -30377391 - L1M2 LINE L1 -3289 2854 2380 4 1570 231 36 0 0 chr3 129222446 129222474 -30377309 + (TG)n Simple_repeat Simple_repeat 1 28 0 4 1570 322 229 0 0 chr3 129222546 129222607 -30377176 - RSINE1 SINE B4 -103 62 2 4 1570 711 258 7 0 chr3 129222726 129222877 -30376906 - RSINE1 SINE B4 -12 153 2 4 1570 383 100 14 0 chr3 129223003 129223073 -30376710 + (GA)n Simple_repeat Simple_repeat 2 72 0 4 1570 361 306 60 101 chr3 129223128 129223426 -30376357 - B4A SINE B4 -6 286 1 4 1570 565 194 0 10 chr3 129223678 129223782 -30376001 - B1_Mur4 SINE Alu -47 103 1 4 1570 289 221 71 0 chr3 129223875 129223967 -30375816 + MTEb LTR MaLR 256 373 -6 4 1570 604 283 0 52 chr3 129224199 129224393 -30375390 - ID_B1 SINE B4 -1 223 40 4 1570 229 143 24 0 chr3 129224396 129224438 -30375345 - ORR1D2 LTR MaLR 0 370 328 4 1570 825 127 11 4 chr3 129224449 129224594 -30375189 - B2_Mm2 SINE B2 -61 155 3 4 1570 1995 227 147 19 chr3 129224633 129225274 -30374509 - Lx5 LINE L1 -740 6720 5783 4 1570 1266 84 28 6 chr3 129225285 129225464 -30374319 - B2_Mm1a SINE B2 -10 183 1 4 1570 5376 184 104 48 chr3 129225499 129226803 -30372980 + Lx LINE L1 4340 5723 -931 4 1570 708 244 27 85 chr3 129227216 129227440 -30372343 + B3 SINE B2 1 211 -5 4 1570 189 0 0 0 chr3 129227450 129227471 -30372312 + (TTTA)n Simple_repeat Simple_repeat 3 23 0 4 1570 1190 36 0 0 chr3 129227473 129227613 -30372170 - B1_Mm SINE Alu -6 141 2 4 1570 747 150 16 0 chr3 129227793 129227920 -30371863 - B1_Mur4 SINE Alu 0 150 22 4 1570 186 43 0 0 chr3 129227920 129227943 -30371840 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 4 1570 858 81 169 0 chr3 129227943 129228067 -30371716 - B1_Mus1 SINE Alu -3 145 1 4 1570 549 133 291 34 chr3 129228320 129228437 -30371346 + B1_Mus2 SINE Alu 1 147 0 4 1570 247 244 216 16 chr3 129228975 129229100 -30370683 + MLT1C LTR MaLR 241 390 -77 4 1570 410 293 0 31 chr3 129230055 129230182 -30369601 + RSINE1 SINE B4 3 125 -40 5 1570 652 66 36 21 chr3 129230182 129230322 -30369461 + (CA)n Simple_repeat Simple_repeat 1 142 0 5 1570 703 196 7 40 chr3 129230597 129230746 -30369037 + B1_Mm SINE Alu 3 146 -1 5 1570 409 288 18 0 chr3 129231034 129231145 -30368638 - ID_B1 SINE B4 -28 196 84 5 1570 411 259 27 48 chr3 129231200 129231346 -30368437 - B1F1 SINE Alu -5 144 2 5 1570 297 312 0 0 chr3 129231384 129231448 -30368335 + PB1 SINE Alu 1 64 -63 5 1570 721 146 7 53 chr3 129231401 129231553 -30368230 - B2_Mm1a SINE B2 -47 146 2 5 1570 195 42 0 0 chr3 129231557 129231581 -30368202 + (T)n Simple_repeat Simple_repeat 1 24 0 5 1570 712 176 85 35 chr3 129231581 129231722 -30368061 - B1_Mus1 SINE Alu 0 148 1 5 1570 1213 54 0 0 chr3 129231785 129231932 -30367851 - B1_Mus1 SINE Alu -1 147 1 5 1570 833 148 0 32 chr3 129231971 129232125 -30367658 + B1_Mur4 SINE Alu 1 149 -1 5 1570 490 259 41 4 chr3 129232343 129232497 -30367286 - ORR1D2 LTR MaLR -228 166 3 5 1570 215 276 86 0 chr3 129232497 129232588 -30367195 - B1_Mur3 SINE Alu -39 110 13 5 1570 546 43 0 0 chr3 129232947 129233016 -30366767 + (TG)n Simple_repeat Simple_repeat 2 70 0 5 1570 644 242 0 0 chr3 129233041 129233165 -30366618 - ID_B1 SINE B4 -13 211 88 5 1570 496 301 5 40 chr3 129233238 129233298 -30366485 - B4A SINE B4 -13 279 86 5 1570 535 201 57 50 chr3 129233298 129233439 -30366344 - B1_Mur2 SINE Alu -7 142 1 5 1570 427 192 77 91 chr3 129233581 129233724 -30366059 + B1_Mur3 SINE Alu 9 149 0 5 1570 535 240 16 16 chr3 129233772 129233895 -30365888 - B1_Mur1 SINE Alu -16 133 11 5 1570 795 163 7 26 chr3 129234161 129234312 -30365471 + B1_Mus1 SINE Alu 1 148 0 5 1571 279 0 0 0 chr3 129239184 129239215 -30360568 + (CCTG)n Simple_repeat Simple_repeat 3 33 0 5 1571 212 0 36 0 chr3 129240317 129240345 -30359438 + (TTTTG)n Simple_repeat Simple_repeat 3 31 0 5 1571 614 189 103 93 chr3 129241316 129241520 -30358263 - B3 SINE B2 -10 206 1 5 1571 365 305 49 7 chr3 129241545 129241687 -30358096 - B3 SINE B2 0 216 69 5 1571 304 26 0 0 chr3 129241755 129241794 -30357989 + PB1D9 SINE Alu 1 39 -81 5 1571 650 114 0 37 chr3 129241800 129241909 -30357874 - B1_Mus1 SINE Alu -43 105 1 5 1571 539 180 18 0 chr3 129243033 129243144 -30356639 - B1_Mur4 SINE Alu 0 150 38 5 1571 732 252 28 28 chr3 129243225 129243441 -30356342 - B3 SINE B2 0 216 1 5 1571 619 168 133 8 chr3 129243930 129244050 -30355733 + B1_Mur2 SINE Alu 2 136 -13 5 1571 697 115 107 0 chr3 129244375 129244497 -30355286 - RLTR27 LTR ERVK 0 309 175 5 1571 1789 81 4 0 chr3 129244481 129244741 -30355042 - RLTR10A LTR ERVK -150 261 1 5 1571 1130 68 7 0 chr3 129244859 129245005 -30354778 - B1_Mus2 SINE Alu 0 147 1 5 1571 1771 177 247 39 chr3 129246300 129246871 -30352912 + RMER6C LTR ERVK 1 690 0 5 1571 339 103 0 8 chr3 129247088 129247156 -30352627 - B1_Mur3 SINE Alu -3 144 79 5 1571 1114 43 50 0 chr3 129247982 129248122 -30351661 + B1_Mus2 SINE Alu 1 147 0 5 1571 225 0 0 0 chr3 129248122 129248147 -30351636 + (A)n Simple_repeat Simple_repeat 1 25 0 5 1571 611 257 35 0 chr3 129248240 129248384 -30351399 - B1_Mur3 SINE Alu 0 149 1 5 1571 669 210 4 2 chr3 129249969 129250115 -30349668 - B1_Mus2 SINE Alu 0 149 1 5 1571 1237 163 196 7 chr3 129250129 129250425 -30349358 - Lx9 LINE L1 -7 7637 7286 5 1571 186 43 0 0 chr3 129250709 129250732 -30349051 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 5 1571 556 204 130 31 chr3 129251541 129251703 -30348080 - B3 SINE B2 -6 210 33 5 1571 212 260 0 0 chr3 129252032 129252082 -30347701 + A-rich Low_complexity Low_complexity 1 50 0 5 1571 350 156 26 0 chr3 129252221 129252298 -30347485 + GA-rich Low_complexity Low_complexity 2 80 0 5 1571 348 202 122 28 chr3 129252418 129252525 -30347258 + ID_B1 SINE B4 108 224 0 5 1571 283 273 82 8 chr3 129252695 129252811 -30346972 - B1_Mus2 SINE Alu -23 126 2 5 1571 277 169 0 125 chr3 129252816 129252840 -30346943 - ID_B1 SINE B4 -69 155 98 5 1571 309 193 0 17 chr3 129252840 129252898 -30346885 - B1_Mus2 SINE Alu -88 59 3 5 1571 22 0 0 0 chr3 129253297 129253319 -30346464 + AT_rich Low_complexity Low_complexity 1 22 0 5 1571 986 103 7 0 chr3 129253750 129253896 -30345887 - B2_Mm1a SINE B2 -46 147 1 5 1571 378 42 0 0 chr3 129254007 129254055 -30345728 + (TG)n Simple_repeat Simple_repeat 1 48 0 5 1571 508 281 0 49 chr3 129254057 129254199 -30345584 - RSINE1 SINE B4 -29 136 2 5 1571 1779 153 126 11 chr3 129254907 129255263 -30344520 + RMER10B LTR ERVL 1 397 -1 5 1571 31 26 0 0 chr3 129255711 129255749 -30344034 + AT_rich Low_complexity Low_complexity 1 38 0 5 1571 198 0 0 0 chr3 129255855 129255877 -30343906 + (TCCC)n Simple_repeat Simple_repeat 3 24 0 5 1571 301 177 0 16 chr3 129255878 129255941 -30343842 - ID2 SINE ID -10 73 12 5 1571 534 247 126 49 chr3 129256075 129256258 -30343525 - B3A SINE B2 -1 197 1 5 1571 350 296 56 0 chr3 129256310 129256435 -30343348 - B4 SINE B4 -160 132 1 5 1571 545 129 11 0 chr3 129256437 129256530 -30343253 + (TTCTC)n Simple_repeat Simple_repeat 4 97 0 5 1571 287 324 26 35 chr3 129257052 129257167 -30342616 - PB1D10 SINE Alu -2 115 2 5 1571 621 239 44 0 chr3 129257686 129257845 -30341938 + MER82 DNA MER2_type 64 229 -424 5 1571 1209 54 0 7 chr3 129258157 129258306 -30341477 - B1_Mus1 SINE Alu 0 148 1 5 1571 1252 116 16 16 chr3 129259112 129259305 -30340478 - B2_Mm2 SINE B2 -1 194 2 5 1571 874 152 25 92 chr3 129262815 129263011 -30336772 + URR1A DNA MER1_type 1 183 -43 5 1571 265 156 33 111 chr3 129263452 129263632 -30336151 + (TTGTG)n Simple_repeat Simple_repeat 5 170 0 5 1571 1020 60 52 0 chr3 129263881 129264015 -30335768 - B1_Mm SINE Alu -5 142 2 5 1571 522 312 131 68 chr3 129264793 129264839 -30334944 + MER82 DNA MER2_type 96 139 -514 5 1571 631 255 143 5 chr3 129264839 129265028 -30334755 - B3 SINE B2 0 216 2 5 1571 522 312 131 68 chr3 129265028 129265438 -30334345 + MER82 DNA MER2_type 140 581 -72 5 1571 403 147 2 134 chr3 129265455 129265573 -30334210 + B1_Mm SINE Alu 1 105 -44 5 1571 318 26 0 0 chr3 129266054 129266093 -30333690 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 5 1571 1283 192 106 12 chr3 129266835 129267173 -30332610 - ORR1D1 LTR MaLR -8 371 2 5 1571 297 0 0 0 chr3 129267173 129267206 -30332577 + (CTA)n Simple_repeat Simple_repeat 3 35 0 5 1571 921 67 0 0 chr3 129267208 129267342 -30332441 + (TTC)n Simple_repeat Simple_repeat 3 136 0 5 1571 234 0 0 0 chr3 129267342 129267367 -30332416 + (TTTG)n Simple_repeat Simple_repeat 1 26 0 5 1571 1123 60 0 0 chr3 129267367 129267500 -30332283 - B1_Mm SINE Alu -13 134 2 5 1571 195 42 0 0 chr3 129267509 129267533 -30332250 + (TTC)n Simple_repeat Simple_repeat 2 25 0 5 1571 1365 88 0 6 chr3 129267534 129267716 -30332067 - B2_Mm2 SINE B2 -14 181 1 5 1571 1248 144 71 5 chr3 129268059 129268269 -30331514 + URR1A DNA MER1_type 1 224 -2 5 1571 319 264 40 64 chr3 129268596 129268798 -30330985 + B4A SINE B4 1 278 -14 5 1571 666 206 78 0 chr3 129269942 129270083 -30329700 - RSINE1 SINE B4 -10 155 4 5 1571 421 264 38 10 chr3 129271177 129271329 -30328454 - MTEa LTR MaLR -1 378 227 5 1571 247 176 88 0 chr3 129271364 129271432 -30328351 - PB1D10 SINE Alu -52 97 24 5 1571 1959 64 16 0 chr3 129271815 129272065 -30327718 - L1_Mus1 LINE L1 0 6567 6314 5 1571 487 255 27 34 chr3 129272412 129272558 -30327225 + B1_Mur3 SINE Alu 5 149 0 5 1571 466 149 217 50 chr3 129272648 129272768 -30327015 + B1_Mur3 SINE Alu 9 148 -1 5 1571 216 372 12 0 chr3 129273804 129273890 -30325893 - PB1D10 SINE Alu -30 87 1 5 1571 715 294 51 55 chr3 129274857 129275139 -30324644 + B4 SINE B4 2 282 -10 5 1571 345 24 0 0 chr3 129275139 129275181 -30324602 + (TG)n Simple_repeat Simple_repeat 1 42 0 5 1571 1083 227 148 18 chr3 129276904 129277241 -30322542 - MTD LTR MaLR -20 399 19 5 1571 1148 75 0 7 chr3 129277607 129277754 -30322029 + B1_Mus2 SINE Alu 1 146 -1 5 1571 2073 87 14 118 chr3 129277923 129278287 -30321496 - ORR1A3 LTR MaLR 0 326 1 5 1571 359 246 71 169 chr3 129278756 129278981 -30320802 + ID_B1 SINE B4 22 224 0 5 1571 664 206 47 62 chr3 129279716 129279908 -30319875 + B3 SINE B2 27 215 -1 5 1571 1689 31 0 0 chr3 129279910 129280101 -30319682 - B2_Mm1a SINE B2 -1 192 2 5 1571 2557 128 5 22 chr3 129280306 129280720 -30319063 + MTB_Mm LTR MaLR 1 407 0 5 1571 378 0 0 0 chr3 129281067 129281109 -30318674 + (TG)n Simple_repeat Simple_repeat 2 43 0 5 1571 464 276 308 27 chr3 129282619 129282842 -30316941 + B4A SINE B4 1 286 -6 5 1571 399 287 16 0 chr3 129284133 129284255 -30315528 - RMER15 LTR ERVL -40 535 412 5 1571 1571 176 148 37 chr3 129284609 129285063 -30314720 + RLTR11A2 LTR ERVK 1 504 -23 5 1571 611 177 67 30 chr3 129286921 129287055 -30312728 - B1_Mur2 SINE Alu -9 140 2 5 1571 291 54 0 0 chr3 129287081 129287118 -30312665 + (TG)n Simple_repeat Simple_repeat 1 37 0 5 1571 604 142 64 28 chr3 129287942 129288051 -30311732 - PB1D9 SINE Alu -3 117 5 6 1571 207 0 0 0 chr3 129288147 129288170 -30311613 + (TG)n Simple_repeat Simple_repeat 2 24 0 6 1571 606 172 62 8 chr3 129288532 129288661 -30311122 - B1_Mus1 SINE Alu 0 148 13 6 1571 276 53 0 0 chr3 129289151 129289189 -30310594 + (TG)n Simple_repeat Simple_repeat 1 38 0 6 1571 492 289 12 56 chr3 129289198 129289359 -30310424 - B3A SINE B2 -27 171 18 6 1571 29 0 0 0 chr3 129290464 129290493 -30309290 + AT_rich Low_complexity Low_complexity 1 29 0 6 1571 333 0 0 0 chr3 129291542 129291579 -30308204 + (TG)n Simple_repeat Simple_repeat 1 37 0 6 1571 978 142 45 6 chr3 129293185 129293362 -30306421 - ORR1B2 LTR MaLR 0 367 184 6 1571 532 234 153 32 chr3 129293611 129293801 -30305982 + B4A SINE B4 2 214 -78 6 1571 493 264 107 40 chr3 129294274 129294499 -30305284 + B4A SINE B4 7 246 -46 6 1571 1152 54 7 26 chr3 129295299 129295450 -30304333 - B1_Mus1 SINE Alu 0 148 1 6 1571 351 0 0 0 chr3 129295926 129295965 -30303818 + (CA)n Simple_repeat Simple_repeat 2 40 0 6 1571 497 240 8 32 chr3 129296570 129296695 -30303088 - B1_Mus2 SINE Alu -8 139 18 6 1571 378 0 0 0 chr3 129297276 129297318 -30302465 + (TG)n Simple_repeat Simple_repeat 2 43 0 6 1571 836 36 0 18 chr3 129297357 129297471 -30302312 - B1_Mus1 SINE Alu 0 148 37 6 1571 297 309 140 10 chr3 129297497 129297690 -30302093 - B4A SINE B4 -72 220 3 6 1571 425 319 99 20 chr3 129299757 129300010 -30299773 + MLT1D LTR MaLR 150 422 -83 6 1571 454 265 88 61 chr3 129300966 129301147 -30298636 - B3A SINE B2 -10 188 3 6 1571 319 221 0 29 chr3 129301153 129301223 -30298560 - B1_Mur3 SINE Alu -80 69 2 6 1571 385 269 82 37 chr3 129301343 129301478 -30298305 - B4 SINE B4 -5 287 147 6 1571 684 182 103 0 chr3 129302391 129302517 -30297266 - B1_Mur3 SINE Alu -6 143 5 6 1571 1547 11 61 0 chr3 129302549 129302729 -30297054 - B2_Mm1t SINE B2 -1 192 2 6 1571 263 181 0 14 chr3 129302738 129302811 -30296972 + (TA)n Simple_repeat Simple_repeat 2 73 0 6 1571 261 0 0 0 chr3 129302885 129302914 -30296869 + (TTTA)n Simple_repeat Simple_repeat 4 32 0 6 1571 373 293 138 13 chr3 129303576 129303728 -30296055 - B4A SINE B4 -72 220 50 6 1571 240 35 0 0 chr3 129304385 129304414 -30295369 + (TCC)n Simple_repeat Simple_repeat 1 29 0 6 1571 294 308 8 8 chr3 129304436 129304557 -30295226 - L1MA4A LINE L1 -370 5933 5813 6 1571 289 311 124 16 chr3 129304930 129305051 -30294732 - ID_B1 SINE B4 -6 218 85 6 1571 468 240 19 0 chr3 129305223 129305327 -30294456 + B3A SINE B2 1 106 -92 6 1571 414 0 0 0 chr3 129305874 129305920 -30293863 + (TTTC)n Simple_repeat Simple_repeat 4 49 0 6 1571 1164 55 0 33 chr3 129307279 129307429 -30292354 + B1_Mus2 SINE Alu 1 145 -2 6 1571 333 96 58 0 chr3 129309863 129309915 -30289868 - B1_Mur4 SINE Alu -10 140 86 6 1571 1187 61 0 7 chr3 129310098 129310246 -30289537 - B1_Mus1 SINE Alu 0 148 2 6 1571 606 91 620 6 chr3 129310334 129310489 -30289294 - ORR1B2 LTR MaLR 0 367 118 6 1571 273 119 0 0 chr3 129311857 129311899 -30287884 + (CGTG)n Simple_repeat Simple_repeat 2 43 0 6 1571 211 180 0 47 chr3 129312362 129312426 -30287357 + (TGGA)n Simple_repeat Simple_repeat 2 62 0 6 1571 22 0 0 0 chr3 129313135 129313157 -30286626 + AT_rich Low_complexity Low_complexity 1 22 0 6 1571 219 103 0 0 chr3 129313268 129313307 -30286476 + (TTGG)n Simple_repeat Simple_repeat 2 40 0 6 1571 180 0 0 0 chr3 129313388 129313408 -30286375 + (GA)n Simple_repeat Simple_repeat 1 20 0 6 1571 414 0 0 0 chr3 129313408 129313454 -30286329 + (TG)n Simple_repeat Simple_repeat 1 46 0 6 1571 410 160 131 12 chr3 129314023 129314136 -30285647 + B1_Mus1 SINE Alu 10 148 0 6 1571 277 286 69 30 chr3 129315126 129315227 -30284556 + B3 SINE B2 111 215 -1 6 1571 180 0 0 0 chr3 129315313 129315333 -30284450 + (CAGA)n Simple_repeat Simple_repeat 2 21 0 6 1571 246 184 0 9 chr3 129315450 129315514 -30284269 + PB1 SINE Alu 49 120 -7 6 1571 24 67 0 0 chr3 129315514 129315559 -30284224 + AT_rich Low_complexity Low_complexity 1 45 0 6 1571 220 272 18 62 chr3 129316529 129316639 -30283144 + PB1D10 SINE Alu 9 119 -30 6 1571 447 19 0 0 chr3 129317597 129317649 -30282134 + (TATG)n Simple_repeat Simple_repeat 2 53 0 6 1571 360 0 0 0 chr3 129317757 129317797 -30281986 + (TA)n Simple_repeat Simple_repeat 1 40 0 6 1571 547 14 28 0 chr3 129318178 129318250 -30281533 + (TG)n Simple_repeat Simple_repeat 2 75 0 6 1571 226 178 22 0 chr3 129318564 129318609 -30281174 + (ATG)n Simple_repeat Simple_repeat 1 46 0 6 1571 654 79 0 0 chr3 129319215 129319304 -30280479 + (TTCC)n Simple_repeat Simple_repeat 2 90 0 6 1571 1063 284 67 78 chr3 129319340 129319956 -30279827 - L1MB2 LINE L1 -80 6091 5483 6 1571 669 196 48 14 chr3 129320718 129320863 -30278920 - B3 SINE B2 -64 152 3 6 1571 1056 267 142 11 chr3 129321162 129321529 -30278254 - MTD LTR MaLR -2 417 3 6 1571 309 155 0 0 chr3 129322398 129322456 -30277327 + CT-rich Low_complexity Low_complexity 2 59 0 6 1571 221 0 35 0 chr3 129322722 129322751 -30277032 + (GTTTG)n Simple_repeat Simple_repeat 2 31 0 6 1571 326 191 14 29 chr3 129325000 129325070 -30274713 + B3 SINE B2 3 71 -145 6 1571 883 73 32 0 chr3 129325088 129325212 -30274571 - B1_Mus1 SINE Alu -10 138 11 6 1571 455 214 26 9 chr3 129325214 129325327 -30274456 + B3 SINE B2 102 216 0 6 1571 201 98 48 32 chr3 129325537 129325600 -30274183 + T-rich Low_complexity Low_complexity 3 66 0 6 1571 429 54 0 0 chr3 129325957 129326013 -30273770 + (TG)n Simple_repeat Simple_repeat 2 57 0 6 1571 1381 89 21 0 chr3 129326769 129326959 -30272824 + B2_Mm2 SINE B2 2 195 0 6 1571 1092 52 0 0 chr3 129328013 129328148 -30271635 + B1_Mus1 SINE Alu 1 135 -13 6 1571 183 42 0 0 chr3 129328148 129328172 -30271611 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 6 1571 625 274 13 13 chr3 129330788 129330947 -30268836 - ORR1E LTR MaLR -194 165 7 6 1571 917 70 0 0 chr3 129330949 129331078 -30268705 + B2_Mm2 SINE B2 2 130 -65 6 1571 207 0 0 0 chr3 129331371 129331394 -30268389 + (CACCC)n Simple_repeat Simple_repeat 4 26 0 6 1571 505 207 18 9 chr3 129333029 129333141 -30266642 + B1_Mus1 SINE Alu 5 117 -31 6 1571 249 239 112 11 chr3 129333182 129333271 -30266512 - B4 SINE B4 -152 140 43 6 1571 279 0 0 0 chr3 129333774 129333805 -30265978 + (CA)n Simple_repeat Simple_repeat 1 31 0 6 1571 306 0 0 0 chr3 129336779 129336813 -30262970 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 6 1571 393 22 0 0 chr3 129336855 129336901 -30262882 + (CA)n Simple_repeat Simple_repeat 1 46 0 6 1571 745 0 42 0 chr3 129337870 129337965 -30261818 + (GAAA)n Simple_repeat Simple_repeat 1 99 0 6 1571 25 31 0 0 chr3 129338282 129338314 -30261469 + AT_rich Low_complexity Low_complexity 1 32 0 6 1571 1278 63 92 0 chr3 129341822 129341996 -30257787 + B2_Mm2 SINE B2 1 190 -5 6 1571 22 35 0 0 chr3 129343101 129343130 -30256653 + AT_rich Low_complexity Low_complexity 1 29 0 6 1571 218 204 0 22 chr3 129344303 129344348 -30255435 + (CA)n Simple_repeat Simple_repeat 2 45 0 6 1571 334 290 186 32 chr3 129344769 129345022 -30254761 - B4A SINE B4 0 292 1 6 1571 195 42 0 0 chr3 129345785 129345809 -30253974 + (A)n Simple_repeat Simple_repeat 1 24 0 6 1571 498 17 0 0 chr3 129346086 129346145 -30253638 + (GA)n Simple_repeat Simple_repeat 2 60 0 6 1571 236 125 50 0 chr3 129347535 129347575 -30252208 + B3 SINE B2 1 42 -174 6 1571 1176 75 0 0 chr3 129347577 129347724 -30252059 + B1_Mus1 SINE Alu 1 147 -1 6 1571 219 36 0 0 chr3 129347764 129347792 -30251991 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 6 1571 242 320 9 83 chr3 129347794 129347903 -30251880 + B4A SINE B4 27 127 -165 6 1571 288 247 0 131 chr3 129347819 129347926 -30251857 + B3A SINE B2 49 141 -57 6 1571 201 121 0 0 chr3 129347926 129347959 -30251824 + (CA)n Simple_repeat Simple_repeat 2 34 0 6 1571 26 50 0 0 chr3 129348047 129348087 -30251696 + AT_rich Low_complexity Low_complexity 1 40 0 6 1571 365 288 24 71 chr3 129348109 129348236 -30251547 + ID_B1 SINE B4 87 207 -17 6 1571 237 350 53 58 chr3 129350739 129350945 -30248838 - B4A SINE B4 -41 251 47 6 1571 32 26 0 0 chr3 129351051 129351090 -30248693 + AT_rich Low_complexity Low_complexity 1 39 0 6 1571 1204 197 33 4 chr3 129351112 129351357 -30248426 - Lx2B LINE L1 -179 6821 6570 6 1571 936 163 152 10 chr3 129351904 129352102 -30247681 + URR1A DNA MER1_type 1 226 0 6 1571 2518 170 94 112 chr3 129353336 129354179 -30245604 + RLTR25B LTR ERVK 2 829 -199 6 1571 425 286 103 0 chr3 129354202 129354328 -30245455 - MTD LTR MaLR -261 158 20 6 1571 1152 75 0 7 chr3 129354340 129354488 -30245295 + B1_Mus1 SINE Alu 2 148 0 6 1571 612 299 126 23 chr3 129354641 129354942 -30244841 - MLT1K LTR MaLR -141 454 123 6 1571 182 316 83 10 chr3 129355237 129355333 -30244450 - MIR SINE MIR -130 132 30 6 1571 1356 141 319 0 chr3 129355428 129355726 -30244057 + ORR1B1 LTR MaLR 1 393 -1 6 1571 292 250 28 0 chr3 129356220 129356292 -30243491 + B4A SINE B4 5 78 -214 6 1571 328 268 23 11 chr3 129356295 129356382 -30243401 + B4A SINE B4 204 291 -1 6 1571 4294 49 55 13 chr3 129356528 129357069 -30242714 + LTRIS2 LTR ERV1 1 564 0 6 1571 438 204 32 0 chr3 129357248 129357341 -30242442 + ORR1B1 LTR MaLR 113 208 -186 6 1571 422 255 49 6 chr3 129357396 129357558 -30242225 + L1ME2z LINE L1 6267 6435 -9 7 1571 575 343 17 21 chr3 129357614 129357852 -30241931 + MTD LTR MaLR 11 247 -172 7 1571 320 266 79 44 chr3 129357935 129358049 -30241734 + MTD LTR MaLR 282 399 -20 7 1571 214 384 10 0 chr3 129358059 129358158 -30241625 + PB1D10 SINE Alu 18 117 0 7 1571 507 251 47 157 chr3 129359073 129359328 -30240455 + B4A SINE B4 3 229 -63 7 1571 2607 214 156 31 chr3 129359328 129360076 -30239707 + RMER1B Other Other 211 1052 -14 7 1571 273 329 109 0 chr3 129361605 129361742 -30238041 + MER5A1 DNA MER1_type 6 157 -9 7 1571 1641 31 0 20 chr3 129362138 129362335 -30237448 - B2_Mm1a SINE B2 0 193 1 7 1571 745 164 44 7 chr3 129362343 129362478 -30237305 - B1_Mm SINE Alu -7 140 1 7 1571 258 312 10 30 chr3 129362530 129362629 -30237154 + L3 LINE CR1 3969 4065 -424 7 1571 229 242 10 50 chr3 129362928 129363028 -30236755 + T-rich Low_complexity Low_complexity 1 96 0 7 1571 242 87 22 0 chr3 129363504 129363550 -30236233 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 7 1571 257 248 67 92 chr3 129363765 129363794 -30235989 + ID_B1 SINE B4 107 223 -1 7 1571 511 77 165 0 chr3 129363794 129363885 -30235898 + B1_Mus2 SINE Alu 41 146 -1 7 1571 274 194 0 61 chr3 129365029 129365095 -30234688 - B4 SINE B4 -58 234 173 7 1571 288 50 0 0 chr3 129365128 129365155 -30234628 + (A)n Simple_repeat Simple_repeat 1 27 0 7 1571 1132 68 0 33 chr3 129365155 129365307 -30234476 + B1_Mm SINE Alu 1 147 0 7 1571 288 50 0 0 chr3 129365307 129365319 -30234464 + (A)n Simple_repeat Simple_repeat 1 12 0 7 1571 463 285 206 20 chr3 129365424 129365628 -30234155 + Lx8 LINE L1 7094 7335 -138 7 1571 493 172 0 11 chr3 129365649 129365737 -30234046 - B4 SINE B4 -203 89 3 7 1571 888 242 32 0 chr3 129365787 129365973 -30233810 + B3 SINE B2 1 192 -24 7 1571 2578 56 22 12 chr3 129366022 129366346 -30233437 - ORR1A2 LTR MaLR 0 327 1 7 1571 1706 200 50 8 chr3 129366358 129366716 -30233067 + ORR1D1 LTR MaLR 2 374 0 7 1571 526 311 136 38 chr3 129366747 129367138 -30232645 - L1ME3B LINE L1 -406 5834 5406 7 1571 504 0 0 0 chr3 129367153 129367209 -30232574 + (TC)n Simple_repeat Simple_repeat 1 56 0 7 1571 348 24 0 0 chr3 129367209 129367250 -30232533 + (TG)n Simple_repeat Simple_repeat 1 41 0 7 1571 631 227 50 0 chr3 129367490 129367631 -30232152 + B1F2 SINE Alu 1 148 -1 7 1571 273 167 111 0 chr3 129367652 129367706 -30232077 + Lx8 LINE L1 6772 6831 -642 7 1571 480 239 138 62 chr3 129367725 129367935 -30231848 + Lx8 LINE L1 6886 7111 -362 7 196 241 303 72 18 chr3 129367966 129368077 -30231706 + Lx8 LINE L1 7245 7361 -112 7 1572 257 341 19 52 chr3 129368077 129368290 -30231493 - L1ME3B LINE L1 -1071 5075 4870 7 1572 1969 102 39 60 chr3 129368560 129368894 -30230889 + ORR1A2 LTR MaLR 1 327 0 7 1572 3515 82 19 4 chr3 129369000 129369475 -30230308 + RLTR45 LTR ERVK 1 482 0 7 1572 4533 62 107 20 chr3 129369475 129370112 -30229671 + RLTR45-int LTR ERVK 1 692 -6552 7 1572 1157 51 0 0 chr3 129370410 129370548 -30229235 + RLTR45-int LTR ERVK 681 818 -6426 7 1572 273 238 91 45 chr3 129370947 129371035 -30228748 + MMTV-int LTR ERVK 2413 2504 -4749 7 1572 11811 42 16 9 chr3 129371330 129373145 -30226638 + RLTR45-int LTR ERVK 1322 3212 -4032 7 1572 3952 85 29 39 chr3 129373115 129373728 -30226055 + RLTR45-int LTR ERVK 3380 3986 -3258 7 1572 8507 38 3 5 chr3 129373721 129374730 -30225053 + RLTR45-int LTR ERVK 5065 6071 -1173 7 1572 1914 101 13 3 chr3 129374753 129375052 -30224731 + RLTR13B1 LTR ERVK 207 508 -385 7 1572 7919 43 0 3 chr3 129375052 129375967 -30223816 + RLTR45-int LTR ERVK 6333 7244 0 7 1572 3533 82 19 2 chr3 129375967 129376441 -30223342 + RLTR45 LTR ERVK 1 482 0 7 1572 404 241 37 9 chr3 129376498 129376607 -30223176 - RSINE1 SINE B4 -17 148 37 7 1572 22 56 0 0 chr3 129376736 129376772 -30223011 + AT_rich Low_complexity Low_complexity 1 36 0 7 1572 263 164 0 62 chr3 129376861 129376926 -30222857 + B1_Mus2 SINE Alu 1 61 -86 7 1572 883 304 50 37 chr3 129376926 129377360 -30222423 + Lx9 LINE L1 7037 7473 -171 7 1572 396 285 50 12 chr3 129377329 129377517 -30222266 - L1ME3B LINE L1 -2021 4125 3937 7 1572 406 295 87 10 chr3 129377851 129378046 -30221737 - LTR33C LTR ERVL 0 629 420 7 1572 603 224 16 0 chr3 129378194 129378319 -30221464 + RMER1B Other Other 381 507 -559 7 1572 2362 198 77 19 chr3 129378333 129378700 -30221083 + RMER1B Other Other 555 956 -110 7 1572 1386 67 45 0 chr3 129378700 129378879 -30220904 - B2_Mm2 SINE B2 -8 187 1 7 1572 207 0 0 0 chr3 129378884 129378907 -30220876 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 7 1572 2362 198 77 19 chr3 129378907 129379011 -30220772 + RMER1B Other Other 960 1060 -6 7 1572 231 304 33 0 chr3 129381493 129381585 -30218198 + GA-rich Low_complexity Low_complexity 4 98 0 7 1572 222 62 0 0 chr3 129381683 129381715 -30218068 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 7 1572 1142 97 97 0 chr3 129381715 129381880 -30217903 - B2_Mm2 SINE B2 -14 181 1 7 1572 189 0 0 0 chr3 129382138 129382159 -30217624 + (TG)n Simple_repeat Simple_repeat 2 22 0 7 1572 1035 93 0 0 chr3 129382159 129382298 -30217485 - B1_Mus1 SINE Alu -9 139 1 7 1572 460 244 8 0 chr3 129382514 129382633 -30217150 - URR1B DNA MER1_type -5 220 101 7 1572 1105 68 0 39 chr3 129383825 129383979 -30215804 - B1_Mus1 SINE Alu 0 148 1 7 1572 843 205 11 43 chr3 129384295 129384479 -30215304 - B3 SINE B2 -13 203 26 7 1572 245 41 20 0 chr3 129384480 129384529 -30215254 + B2_Mm1t SINE B2 143 192 -1 7 1572 33 0 0 0 chr3 129385689 129385722 -30214061 + AT_rich Low_complexity Low_complexity 1 33 0 7 1572 358 266 202 55 chr3 129386542 129386705 -30213078 - B4A SINE B4 -2 290 104 7 1572 1326 104 0 0 chr3 129386726 129387159 -30212624 + (TATTG)n Simple_repeat Simple_repeat 1 433 0 7 1572 371 228 16 2 chr3 129387159 129387238 -30212545 - B4A SINE B4 -210 82 3 7 1572 372 257 40 0 chr3 129387341 129387442 -30212341 + PB1D10 SINE Alu 13 117 0 7 1572 273 210 0 0 chr3 129387559 129387621 -30212162 + (TATG)n Simple_repeat Simple_repeat 3 64 0 7 1572 555 155 63 9 chr3 129387622 129387733 -30212050 - B1_Mur3 SINE Alu -30 119 3 7 1572 184 311 146 30 chr3 129388024 129388223 -30211560 - MIR SINE MIR -36 226 5 7 1572 1014 8 0 15 chr3 129389549 129389679 -30210104 - B1_Mus1 SINE Alu 0 148 21 7 1572 374 174 0 115 chr3 129389586 129389690 -30210093 - MT2B LTR ERVL -337 264 173 7 1572 281 280 88 0 chr3 129390446 129390583 -30209200 - MIRc SINE MIR -116 152 3 7 1572 336 247 144 0 chr3 129391489 129391586 -30208197 - ID_B1 SINE B4 -13 211 101 7 1572 228 282 172 31 chr3 129391586 129391607 -30208176 - B1F2 SINE Alu -3 104 1 7 1572 1667 42 0 0 chr3 129392401 129392594 -30207189 - B2_Mm1a SINE B2 0 193 1 7 1572 486 299 8 0 chr3 129392610 129392744 -30207039 - RSINE1 SINE B4 -4 161 27 7 1572 603 259 12 0 chr3 129392800 129392966 -30206817 - B4A SINE B4 -123 169 2 7 1572 1194 55 7 0 chr3 129393199 129393345 -30206438 + B1_Mm SINE Alu 1 147 0 7 1572 413 238 0 29 chr3 129394293 129394397 -30205386 - B1F SINE Alu -43 106 6 7 1572 441 0 0 0 chr3 129394418 129394467 -30205316 + (TTTA)n Simple_repeat Simple_repeat 3 51 0 7 1572 1243 25 0 6 chr3 129394467 129394627 -30205156 - B2_Mm1a SINE B2 -33 160 2 7 1572 621 179 18 0 chr3 129394909 129395021 -30204762 + PB1D9 SINE Alu 1 114 -6 7 1572 246 261 0 0 chr3 129395148 129395213 -30204570 + MER33 DNA MER1_type 63 127 -197 7 1572 22 0 0 0 chr3 129395258 129395280 -30204503 + AT_rich Low_complexity Low_complexity 1 22 0 7 1572 713 197 73 0 chr3 129395287 129395424 -30204359 - B1_Mus2 SINE Alu 0 147 1 7 1572 225 83 0 0 chr3 129395614 129395650 -30204133 + (CAT)n Simple_repeat Simple_repeat 2 37 0 7 1572 894 152 0 0 chr3 129396333 129396465 -30203318 + B1_Mus2 SINE Alu 4 135 -12 7 1572 409 272 75 21 chr3 129396738 129396926 -30202857 + MER33 DNA MER1_type 1 198 -126 7 1572 222 355 9 45 chr3 129397458 129397570 -30202213 + L2b LINE L2 3059 3166 -209 7 1572 731 154 0 0 chr3 129398013 129398143 -30201640 + B1_Mur3 SINE Alu 19 148 -1 7 1572 443 130 13 0 chr3 129398172 129398249 -30201534 + (GAAA)n Simple_repeat Simple_repeat 3 80 0 7 1572 378 293 81 0 chr3 129398340 129398439 -30201344 - RSINE1 SINE B4 -54 111 5 7 1572 522 162 0 17 chr3 129398488 129398596 -30201187 + MTC LTR MaLR 1 101 -295 7 1572 582 128 510 0 chr3 129399860 129400009 -30199774 + URR1A DNA MER1_type 2 226 0 7 1572 1008 274 56 24 chr3 129401211 129401619 -30198164 - BGLII_B LTR ERVK -4 437 18 7 1572 706 50 0 20 chr3 129402277 129402378 -30197405 + (TTTC)n Simple_repeat Simple_repeat 2 100 0 7 1572 1004 96 29 0 chr3 129402380 129402516 -30197267 - B1_Mus1 SINE Alu -6 142 3 7 1572 701 220 140 6 chr3 129403003 129403181 -30196602 + B3 SINE B2 2 203 -13 7 1572 225 243 157 0 chr3 129403241 129403311 -30196472 + ID4 SINE ID 2 82 -1 7 1572 318 115 0 0 chr3 129403861 129403913 -30195870 + (TG)n Simple_repeat Simple_repeat 1 52 0 7 1572 737 259 31 95 chr3 129403922 129404216 -30195567 - B4A SINE B4 -15 277 3 7 1572 540 170 0 0 chr3 129404663 129404769 -30195014 + (TA)n Simple_repeat Simple_repeat 2 107 0 7 1572 1380 74 21 0 chr3 129405739 129405928 -30193855 + B2_Mm1t SINE B2 1 193 0 7 1572 9095 91 64 30 chr3 129406342 129408074 -30191709 + Lx3B LINE L1 5168 6972 -1 7 1572 306 0 0 0 chr3 129408080 129408114 -30191669 + (TAA)n Simple_repeat Simple_repeat 3 36 0 7 1572 348 254 109 8 chr3 129408117 129408236 -30191547 + Charlie1 DNA MER1_type 2644 2774 -7 7 1572 279 0 0 0 chr3 129408253 129408284 -30191499 + (TAA)n Simple_repeat Simple_repeat 2 32 0 7 1572 763 29 20 0 chr3 129409675 129409777 -30190006 + (TCTA)n Simple_repeat Simple_repeat 1 104 0 7 1572 441 0 0 0 chr3 129410550 129410599 -30189184 + (TC)n Simple_repeat Simple_repeat 2 50 0 7 1572 1227 61 0 0 chr3 129410603 129410750 -30189033 - B1_Mus2 SINE Alu 0 147 1 7 1572 647 257 173 25 chr3 129411480 129411763 -30188020 - L1MB2 LINE L1 0 6171 5847 7 1572 710 230 32 12 chr3 129411906 129412095 -30187688 + B3 SINE B2 11 198 0 7 1572 799 257 41 23 chr3 129412260 129412479 -30187304 + ID_B1 SINE B4 2 224 0 7 1572 329 109 16 0 chr3 129413226 129413290 -30186493 + (TG)n Simple_repeat Simple_repeat 2 66 0 7 1572 633 237 21 7 chr3 129413291 129413431 -30186352 - B3A SINE B2 -56 142 1 7 1572 276 175 0 0 chr3 129413593 129413656 -30186127 + A-rich Low_complexity Low_complexity 1 63 0 8 1572 608 287 5 22 chr3 129413910 129414095 -30185688 + B3A SINE B2 1 182 -16 8 1572 1093 194 9 36 chr3 129415405 129415624 -30184159 - B3 SINE B2 -3 213 1 8 1572 402 120 0 0 chr3 129416060 129416135 -30183648 + (TC)n Simple_repeat Simple_repeat 2 76 0 8 1572 270 0 0 0 chr3 129416135 129416165 -30183618 + (CA)n Simple_repeat Simple_repeat 1 30 0 8 1572 1072 108 0 0 chr3 129416203 129416351 -30183432 + B1_Mus1 SINE Alu 1 148 0 8 1572 1613 122 62 141 chr3 129419879 129420224 -30179559 + ORR1B2 LTR MaLR 1 326 -41 8 1572 1333 55 31 57 chr3 129420224 129420416 -30179367 + B2_Mm1a SINE B2 2 188 -5 8 1572 1613 122 62 141 chr3 129420416 129420460 -30179323 + ORR1B2 LTR MaLR 327 359 -8 8 1572 213 39 0 0 chr3 129420469 129420495 -30179288 + (TCTCTG)n Simple_repeat Simple_repeat 5 30 0 8 1572 1224 54 0 7 chr3 129422586 129422735 -30177048 - B1_Mus1 SINE Alu 0 148 1 8 1572 1459 55 11 0 chr3 129423565 129423747 -30176036 - B2_Mm1t SINE B2 -8 185 2 8 1572 266 282 27 18 chr3 129423986 129424098 -30175685 + PB1D10 SINE Alu 1 113 -4 8 1572 266 320 38 25 chr3 129424799 129424959 -30174824 + L1MC5 LINE L1 7048 7209 -752 8 1572 1348 97 11 0 chr3 129425316 129425501 -30174282 - B2_Mm1t SINE B2 -6 187 1 8 1572 241 197 116 93 chr3 129425685 129425814 -30173969 + L1MC5 LINE L1 7616 7747 -214 8 1572 428 281 9 17 chr3 129425921 129426037 -30173746 - PB1D10 SINE Alu -2 115 1 8 1572 1107 67 157 6 chr3 129426564 129426730 -30173053 + B2_Mm2 SINE B2 1 191 -4 8 1572 278 275 0 92 chr3 129426765 129426841 -30172942 - ID4_ SINE ID -2 81 13 8 1572 315 188 62 0 chr3 129426863 129426943 -30172840 - B1F SINE Alu -9 140 56 8 1572 284 188 16 0 chr3 129427364 129427428 -30172355 + GA-rich Low_complexity Low_complexity 1 65 0 8 1572 941 170 41 91 chr3 129427471 129427691 -30172092 + B3 SINE B2 4 212 -4 8 1572 237 209 0 0 chr3 129427849 129427892 -30171891 + GA-rich Low_complexity Low_complexity 3 45 0 8 1572 715 272 45 40 chr3 129430012 129430234 -30169549 + ID_B1 SINE B4 1 223 -1 8 1572 393 141 0 0 chr3 129430236 129430307 -30169476 + (GGA)n Simple_repeat Simple_repeat 2 72 0 8 1572 320 213 16 0 chr3 129430763 129430824 -30168959 - ID4 SINE ID -17 66 5 8 1572 423 245 48 10 chr3 129430842 129430945 -30168838 - PB1D7 SINE Alu -13 107 1 8 1572 216 0 0 0 chr3 129432039 129432063 -30167720 + (T)n Simple_repeat Simple_repeat 1 24 0 8 1572 278 321 31 6 chr3 129433152 129433312 -30166471 + L1MC5 LINE L1 6980 7143 -818 8 1572 227 133 0 22 chr3 129435474 129435520 -30164263 + G-rich Low_complexity Low_complexity 4 48 0 8 1572 268 77 39 0 chr3 129439026 129439078 -30160705 + (TTTG)n Simple_repeat Simple_repeat 3 56 0 8 1572 369 0 0 0 chr3 129440261 129440302 -30159481 + (CAAAA)n Simple_repeat Simple_repeat 2 42 0 8 1572 436 278 63 0 chr3 129440918 129441092 -30158691 - ID_B1 SINE B4 -9 215 1 8 1572 267 226 83 0 chr3 129441755 129441839 -30157944 - MER113 DNA MER1_type -298 223 133 8 1572 309 317 46 151 chr3 129442164 129442383 -30157400 - MER20 DNA MER1_type 0 219 24 8 1572 488 289 137 16 chr3 129443355 129443663 -30156120 - ORR1E LTR MaLR -35 335 1 8 1572 201 250 0 0 chr3 129444416 129444476 -30155307 + (TATG)n Simple_repeat Simple_repeat 1 60 0 8 1572 241 245 92 28 chr3 129444527 129444636 -30155147 + MER53 DNA hAT 77 192 -1 8 1572 207 100 0 0 chr3 129446342 129446372 -30153411 + (TTAA)n Simple_repeat Simple_repeat 1 30 0 8 1572 1030 159 80 20 chr3 129446378 129446561 -30153222 + B3 SINE B2 1 198 -18 8 1572 306 0 0 0 chr3 129446561 129446595 -30153188 + (CA)n Simple_repeat Simple_repeat 1 34 0 8 1572 1030 159 80 20 chr3 129446595 129446610 -30153173 + B3 SINE B2 199 211 -5 8 1572 1303 71 66 6 chr3 129446629 129446812 -30152971 + B2_Mm2 SINE B2 1 194 -1 8 1572 634 249 38 11 chr3 129447016 129447201 -30152582 + MTD LTR MaLR 6 195 -212 8 1572 704 116 68 61 chr3 129447202 129447349 -30152434 + B1_Mur2 SINE Alu 1 148 -1 8 1572 270 115 0 0 chr3 129447353 129447405 -30152378 + (A)n Simple_repeat Simple_repeat 1 52 0 8 1572 2638 173 101 21 chr3 129448626 129448779 -30151004 + RMER12 LTR ERVK 1 172 -1232 8 1572 1358 188 81 48 chr3 129448779 129449176 -30150607 + RMER17C LTR ERVK 1 410 0 8 1572 3334 122 33 20 chr3 129449176 129449836 -30149947 + RMER12 LTR ERVK 173 765 -557 8 1572 569 234 169 47 chr3 129449821 129449844 -30149939 + RMER12 LTR ERVK 958 983 -339 8 1572 429 66 0 0 chr3 129449844 129449905 -30149878 + (TCTG)n Simple_repeat Simple_repeat 2 62 0 8 1572 569 234 169 47 chr3 129449905 129450159 -30149624 + RMER12 LTR ERVK 984 1269 -53 8 1572 381 250 0 50 chr3 129450229 129450330 -30149453 + PB1D10 SINE Alu 1 96 -21 8 1572 1180 61 0 0 chr3 129450357 129450504 -30149279 + B1_Mus1 SINE Alu 1 147 -1 8 1572 327 179 0 0 chr3 129450512 129450579 -30149204 + GA-rich Low_complexity Low_complexity 1 67 0 8 1572 489 281 56 72 chr3 129450867 129451047 -30148736 + B3A SINE B2 6 182 -16 8 1572 180 217 0 0 chr3 129451049 129451095 -30148688 + (CA)n Simple_repeat Simple_repeat 1 46 0 8 1572 949 272 117 46 chr3 129451241 129451853 -30147930 - L1MD LINE L1 -760 5419 4771 8 1572 389 316 28 22 chr3 129452069 129452212 -30147571 + B4A SINE B4 2 131 -93 8 1572 389 188 11 59 chr3 129452298 129452485 -30147298 + (CA)n Simple_repeat Simple_repeat 2 179 0 8 1572 21 0 0 0 chr3 129453314 129453335 -30146448 + AT_rich Low_complexity Low_complexity 1 21 0 8 1572 523 226 0 9 chr3 129453335 129453442 -30146341 - PB1D9 SINE Alu -8 112 7 8 1572 234 0 0 0 chr3 129454411 129454437 -30145346 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 8 1572 258 105 0 0 chr3 129456735 129456773 -30143010 + (CTTG)n Simple_repeat Simple_repeat 2 39 0 8 1572 247 227 144 0 chr3 129456824 129456921 -30142862 + PB1D7 SINE Alu 8 118 -2 8 1572 262 98 19 19 chr3 129457013 129457065 -30142718 + (CCCCCA)n Simple_repeat Simple_repeat 3 54 0 8 1572 634 266 0 53 chr3 129459736 129459907 -30139876 + RSINE1 SINE B4 4 165 0 8 1572 359 107 18 0 chr3 129460385 129460441 -30139342 + RMER16-int LTR ERVK 5350 5406 0 8 1572 2181 168 115 42 chr3 129460441 129460880 -30138903 + RMER16 LTR ERVK 1 464 -69 8 1572 225 0 0 0 chr3 129460880 129460905 -30138878 + (TC)n Simple_repeat Simple_repeat 2 26 0 8 1572 2181 168 115 42 chr3 129460905 129460962 -30138821 + RMER16 LTR ERVK 465 532 -1 8 1572 773 254 47 16 chr3 129460962 129461154 -30138629 + RMER16-int LTR ERVK 1 198 -5208 8 1572 387 296 19 8 chr3 129461169 129461353 -30138430 + RMER16-int LTR ERVK 194 466 -7751 8 1572 16044 154 18 26 chr3 129461566 129464600 -30135183 + RMER16-int LTR ERVK 1513 5306 -861 8 1572 8147 109 4 10 chr3 129465079 129466247 -30133536 + RMER16-int LTR ERVK 4137 5297 -109 8 1572 535 138 0 11 chr3 129466324 129466412 -30133371 + RMER16-int LTR ERVK 5318 5404 -2 8 1572 2079 178 128 31 chr3 129466412 129466898 -30132885 + RMER16 LTR ERVK 1 533 0 8 1572 233 242 176 29 chr3 129466902 129467004 -30132779 - L1M5 LINE L1 -1566 4580 4464 8 1572 352 265 72 0 chr3 129467531 129467614 -30132169 - PB1D10 SINE Alu -10 107 19 8 1572 239 276 45 11 chr3 129468783 129468871 -30130912 - L1M1 LINE L1 -425 5875 5785 8 1572 1682 16 0 0 chr3 129469315 129469500 -30130283 - B2_Mm1a SINE B2 -7 186 2 8 1572 1433 151 0 22 chr3 129470787 129471017 -30128766 + URR1B DNA MER1_type 1 225 0 8 1572 2756 98 30 23 chr3 129471188 129471585 -30128198 + MTB LTR MaLR 1 400 0 8 1572 854 307 145 0 chr3 129472923 129473275 -30126508 + Lx8 LINE L1 6628 7030 -443 8 1572 402 271 105 12 chr3 129473339 129473511 -30126272 + Lx8 LINE L1 7284 7471 -2 8 1572 29 47 0 0 chr3 129473546 129473589 -30126194 + AT_rich Low_complexity Low_complexity 1 43 0 8 1572 321 287 0 32 chr3 129473714 129473840 -30125943 + L1M3e LINE L1 56 177 -6853 8 1572 691 306 31 14 chr3 129473855 129474077 -30125706 + B4 SINE B4 33 258 -34 8 1572 1004 175 10 29 chr3 129474226 129474432 -30125351 + URR1B DNA MER1_type 1 202 -23 8 1572 1020 53 0 0 chr3 129474428 129474560 -30125223 - B2_Mm2 SINE B2 -62 133 2 8 1572 376 277 27 35 chr3 129475011 129475140 -30124643 - B1F SINE Alu -5 144 16 8 1572 24 0 0 0 chr3 129475173 129475197 -30124586 + AT_rich Low_complexity Low_complexity 1 24 0 8 1572 1184 68 0 0 chr3 129475198 129475344 -30124439 - B1_Mus1 SINE Alu -1 147 2 8 1572 1022 176 52 33 chr3 129475392 129475510 -30124273 - B3 SINE B2 0 216 94 8 1572 2637 110 94 10 chr3 129475510 129475913 -30123870 + RLTR9B LTR ERVK 1 437 0 8 1572 1022 176 52 33 chr3 129475913 129476006 -30123777 - B3 SINE B2 -123 93 1 8 1572 227 233 70 0 chr3 129476687 129476773 -30123010 - L1M3 LINE L1 -3304 2836 2745 8 1572 28 48 0 0 chr3 129476861 129476903 -30122880 + AT_rich Low_complexity Low_complexity 1 42 0 8 1572 269 289 0 0 chr3 129477792 129477868 -30121915 + PB1D10 SINE Alu 40 115 -2 8 1572 6074 64 100 9 chr3 129478012 129479471 -30120312 - L1VL2 LINE L1 -1789 1826 212 8 1572 2983 60 42 3 chr3 129479807 129480192 -30119591 - MTB LTR MaLR 0 400 1 8 1572 339 25 0 0 chr3 129481115 129481155 -30118628 + (CATA)n Simple_repeat Simple_repeat 4 43 0 8 1572 609 52 0 0 chr3 129481640 129481717 -30118066 + (CTG)n Simple_repeat Simple_repeat 1 77 0 8 1572 302 352 25 37 chr3 129481813 129481975 -30117808 + L1MDa LINE L1 332 491 -6142 8 1572 524 353 55 58 chr3 129482045 129482337 -30117446 + B4A SINE B4 2 292 0 8 1572 303 307 0 56 chr3 129482371 129482478 -30117305 + PB1D10 SINE Alu 17 117 0 8 1572 305 88 35 0 chr3 129482478 129482535 -30117248 + (TAAA)n Simple_repeat Simple_repeat 2 60 0 8 1572 391 342 92 53 chr3 129482538 129483440 -30116343 - L1MC4a LINE L1 -1573 6309 5373 8 1572 459 254 210 22 chr3 129484346 129484527 -30115256 + Lx8 LINE L1 6694 6908 -565 8 1572 447 224 0 10 chr3 129484907 129485006 -30114777 + PB1D10 SINE Alu 20 117 0 8 1572 183 205 0 0 chr3 129485267 129485306 -30114477 + (TG)n Simple_repeat Simple_repeat 1 39 0 8 1572 338 323 71 47 chr3 129485369 129485580 -30114203 - B4A SINE B4 -66 226 11 8 1572 1041 179 71 0 chr3 129485743 129485939 -30113844 + B3 SINE B2 4 213 -3 8 1572 360 0 0 0 chr3 129486074 129486114 -30113669 + (TG)n Simple_repeat Simple_repeat 2 41 0 8 1572 358 312 13 78 chr3 129486122 129486275 -30113508 - RSINE1 SINE B4 -15 150 8 8 1572 463 179 13 39 chr3 129487068 129487300 -30112483 + GA-rich Low_complexity Low_complexity 1 225 0 8 1572 802 121 0 31 chr3 129487303 129487465 -30112318 + G-rich Low_complexity Low_complexity 2 158 0 9 1572 200 197 31 62 chr3 129487466 129487531 -30112252 + GA-rich Low_complexity Low_complexity 3 65 0 9 1572 741 254 72 18 chr3 129488888 129489165 -30110618 - LTR69 LTR ERVL -113 475 184 9 1572 697 247 20 31 chr3 129489463 129489491 -30110292 - L1_Rod LINE L1 -1998 3849 3822 9 1572 2105 189 58 0 chr3 129489491 129489887 -30109896 + MTC LTR MaLR 1 419 -2 9 1572 697 247 20 31 chr3 129489887 129490054 -30109729 - L1_Rod LINE L1 -2026 3821 3656 9 1572 266 282 13 0 chr3 129490099 129490177 -30109606 - L1M3 LINE L1 -2452 3688 3610 9 1572 194 62 31 0 chr3 129490180 129490212 -30109571 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 9 1572 244 106 20 78 chr3 129490212 129490263 -30109520 - L1_Rod LINE L1 -2947 2900 2853 9 1572 473 237 0 26 chr3 129490263 129490380 -30109403 + B3 SINE B2 103 216 0 9 1572 1668 32 0 0 chr3 129492621 129492810 -30106973 + B2_Mm1a SINE B2 1 189 -4 9 1572 1269 27 0 0 chr3 129493643 129493790 -30105993 + B1_Mm SINE Alu 1 147 0 9 1572 369 202 12 37 chr3 129493908 129493990 -30105793 + ID4 SINE ID 4 83 0 9 1572 2160 151 47 7 chr3 129494657 129495065 -30104718 + RLTR20B1 LTR ERVK 5 428 -135 9 1572 480 207 0 0 chr3 129495081 129495192 -30104591 + (TG)n Simple_repeat Simple_repeat 2 112 0 9 1572 3170 54 2 8 chr3 129495194 129495589 -30104194 + MTA_Mm LTR MaLR 4 396 0 9 1572 362 239 11 11 chr3 129495589 129495678 -30104105 + RLTR20B1 LTR ERVK 453 541 -19 9 1572 216 0 0 0 chr3 129495680 129495704 -30104079 + (TTAA)n Simple_repeat Simple_repeat 4 27 0 9 1572 240 232 18 0 chr3 129495747 129495803 -30103980 - MIR SINE MIR -131 131 75 9 1572 432 55 0 0 chr3 129495817 129495872 -30103911 + (TG)n Simple_repeat Simple_repeat 2 56 0 9 1572 244 128 21 0 chr3 129495873 129495920 -30103863 - Lx4A LINE L1 -2 7056 7009 9 1572 325 318 40 29 chr3 129496295 129496470 -30103313 + MLT1F-int LTR MaLR 163 339 -1150 9 1572 790 173 22 15 chr3 129497996 129498131 -30101652 + B1_Mur1 SINE Alu 2 137 -12 9 1572 361 77 0 0 chr3 129498164 129498216 -30101567 + URR1B DNA MER1_type 174 225 0 9 1572 791 288 53 8 chr3 129498243 129498734 -30101049 + L1M2 LINE L1 4972 5489 -811 9 1572 928 189 6 0 chr3 129498861 129499030 -30100753 + ORR1B1 LTR MaLR 4 173 -221 9 1573 237 292 55 14 chr3 129499203 129499276 -30100507 + MER81 DNA AcHobo 22 97 -17 9 1573 327 305 29 46 chr3 129499329 129499504 -30100279 - LTR40a LTR ERVL -314 205 34 9 1573 345 84 24 145 chr3 129499613 129499696 -30100087 + B1_Mus2 SINE Alu 1 73 -74 9 1573 306 237 85 34 chr3 129499796 129499914 -30099869 - L1M5 LINE L1 -498 5666 5543 9 1573 362 296 52 45 chr3 129501180 129501449 -30098334 + L1M5 LINE L1 5398 5668 -776 1 1573 450 78 0 0 chr3 129502717 129502781 -30097002 - B1_Mus2 SINE Alu 0 147 84 2 1573 423 0 0 0 chr3 129503146 129503193 -30096590 + (CA)n Simple_repeat Simple_repeat 2 48 0 3 1573 337 103 319 9 chr3 129503823 129503936 -30095847 - B2_Mm2 SINE B2 -1 194 47 4 1573 1215 114 11 0 chr3 129503968 129504143 -30095640 - B2_Mm1t SINE B2 -14 179 3 5 1573 270 136 0 0 chr3 129504229 129504273 -30095510 + (CCA)n Simple_repeat Simple_repeat 1 44 0 6 1573 239 222 41 14 chr3 129504311 129504384 -30095399 - MADE2 DNA Mariner 0 80 6 7 1573 567 259 88 0 chr3 129504806 129505011 -30094772 + ID_B1 SINE B4 1 223 -1 8 1573 341 158 0 26 chr3 129505867 129505945 -30093838 + (CACCAT)n Simple_repeat Simple_repeat 4 79 0 9 1573 643 285 35 5 chr3 129507696 129507897 -30091886 + ID_B1 SINE B4 5 211 -13 1 1573 504 216 108 0 chr3 129507996 129508098 -30091685 - PB1D9 SINE Alu -7 113 1 1 1573 207 363 51 42 chr3 129508180 129508298 -30091485 - L2c LINE L2 0 3387 3269 1 1573 992 102 0 34 chr3 129508425 129508787 -30090996 + (TG)n Simple_repeat Simple_repeat 1 349 0 1 1573 691 302 27 0 chr3 129509831 129510053 -30089730 + MTE2b LTR MaLR 16 243 -136 1 1573 337 245 107 10 chr3 129510691 129510794 -30088989 + PB1D7 SINE Alu 3 115 -5 1 1573 210 294 82 25 chr3 129510907 129511029 -30088754 - L2a LINE L2 -25 3401 3273 1 1573 632 169 75 23 chr3 129511050 129511183 -30088600 + B3 SINE B2 1 140 -76 1 1573 189 0 0 0 chr3 129511184 129511205 -30088578 + (CAGG)n Simple_repeat Simple_repeat 4 24 0 1 1573 408 71 0 0 chr3 129511205 129511261 -30088522 + (CA)n Simple_repeat Simple_repeat 1 56 0 1 1573 22 0 0 0 chr3 129511498 129511520 -30088263 + AT_rich Low_complexity Low_complexity 1 22 0 2 1573 1806 198 117 3 chr3 129512955 129513330 -30086453 + MTD LTR MaLR 1 418 -1 2 1573 549 273 38 0 chr3 129514843 129514975 -30084808 + MER58A DNA MER1_type 5 141 -83 2 1573 637 191 35 92 chr3 129516347 129516520 -30083263 - RSINE1 SINE B4 0 165 3 2 1573 1276 261 169 37 chr3 129516581 129517066 -30082717 + Lx8 LINE L1 6599 7147 -326 2 1573 554 28 14 0 chr3 129517292 129517364 -30082419 + (TAGA)n Simple_repeat Simple_repeat 2 74 0 2 1573 534 103 0 0 chr3 129517494 129517572 -30082211 + (GGGA)n Simple_repeat Simple_repeat 1 78 0 2 1573 843 220 22 6 chr3 129518068 129518251 -30081532 + B3 SINE B2 1 186 -30 2 1573 273 340 13 26 chr3 129518251 129518405 -30081378 - B4A SINE B4 -140 152 1 2 1573 2249 145 62 18 chr3 129519090 129519491 -30080292 - MTC LTR MaLR -1 420 2 2 1573 257 127 36 0 chr3 129519664 129519719 -30080064 + (TCTCTG)n Simple_repeat Simple_repeat 2 58 0 3 1573 8416 36 1 4 chr3 129520062 129521126 -30078657 - L1Md_F3 LINE L1 -14 6570 5510 3 1573 1307 95 21 16 chr3 129522356 129522548 -30077235 - B2_Mm2 SINE B2 0 195 3 3 1573 197 259 74 0 chr3 129522831 129522885 -30076898 + L2 LINE L2 2803 2860 -559 3 1573 694 232 0 32 chr3 129523217 129523373 -30076410 + B3A SINE B2 2 152 -46 3 1573 324 0 0 0 chr3 129523387 129523423 -30076360 + (TC)n Simple_repeat Simple_repeat 1 36 0 3 1573 426 20 0 0 chr3 129523423 129523473 -30076310 + (CA)n Simple_repeat Simple_repeat 1 51 0 3 1573 417 216 0 98 chr3 129523501 129523624 -30076159 + PB1D10 SINE Alu 1 111 -6 3 1573 274 267 44 11 chr3 129524162 129524253 -30075530 - PB1D7 SINE Alu -1 119 26 3 1573 315 0 0 0 chr3 129525840 129525875 -30073908 + (TG)n Simple_repeat Simple_repeat 1 35 0 3 1573 412 238 163 26 chr3 129526889 129527079 -30072704 + ORR1D1 LTR MaLR 8 223 -151 4 1573 25 0 0 0 chr3 129527839 129527864 -30071919 + AT_rich Low_complexity Low_complexity 1 25 0 4 1573 24 0 0 0 chr3 129528130 129528154 -30071629 + AT_rich Low_complexity Low_complexity 1 24 0 4 1573 219 226 0 0 chr3 129528472 129528525 -30071258 + CT-rich Low_complexity Low_complexity 2 54 0 4 1573 748 163 56 7 chr3 129528925 129529067 -30070716 + B1_Mur4 SINE Alu 2 150 0 4 1573 251 250 0 0 chr3 129529740 129529816 -30069967 + CT-rich Low_complexity Low_complexity 2 77 0 4 1573 293 325 86 35 chr3 129529944 129530134 -30069649 + MIR SINE MIR 44 255 -13 4 1573 309 230 76 54 chr3 129531430 129531522 -30068261 - B1F SINE Alu -34 115 22 4 1573 325 300 20 79 chr3 129531533 129531556 -30068227 + ID_B1 SINE B4 65 207 -17 4 1573 380 286 31 23 chr3 129531556 129531685 -30068098 + B1F1 SINE Alu 3 132 -17 4 1573 316 284 49 98 chr3 129533023 129533187 -30066596 - RMER30 DNA MER1_type -4 198 43 5 1573 258 148 0 0 chr3 129533609 129533663 -30066120 + (CCG)n Simple_repeat Simple_repeat 2 55 0 5 1573 268 231 56 7 chr3 129535168 129535307 -30064476 + (TA)n Simple_repeat Simple_repeat 2 147 0 5 1573 225 0 0 0 chr3 129535307 129535332 -30064451 + (CA)n Simple_repeat Simple_repeat 2 26 0 5 1573 319 187 132 0 chr3 129535982 129536073 -30063710 - L1MB3 LINE L1 0 6183 6081 5 1573 332 347 8 8 chr3 129536120 129536239 -30063544 + B4A SINE B4 1 119 -173 5 1573 202 309 0 0 chr3 129536338 129536419 -30063364 + T-rich Low_complexity Low_complexity 3 83 0 5 1573 864 231 54 0 chr3 129536447 129536633 -30063150 + B3A SINE B2 3 198 0 5 1573 899 167 0 0 chr3 129536646 129536790 -30062993 - B1_Mus1 SINE Alu -2 146 3 5 1573 484 262 8 15 chr3 129537158 129537290 -30062493 + MTD LTR MaLR 1 131 -288 5 1573 2460 131 2 31 chr3 129537290 129537709 -30062074 - RMER4B LTR ERVK 0 585 179 6 1573 498 298 38 59 chr3 129538011 129538250 -30061533 + ERVL-E-int LTR ERVL 4598 4831 -836 6 1573 618 228 7 52 chr3 129538264 129538417 -30061366 + B1F2 SINE Alu 1 146 -3 6 1573 342 0 0 0 chr3 129539513 129539551 -30060232 + (T)n Simple_repeat Simple_repeat 1 38 0 6 1573 295 269 143 57 chr3 129540258 129540467 -30059316 - Tigger5 DNA MER2_type -15 2391 2165 6 1573 252 316 175 7 chr3 129540545 129540682 -30059101 - Tigger5 DNA MER2_type -2201 205 46 6 1573 228 297 11 42 chr3 129543218 129543313 -30056470 - B4 SINE B4 -195 97 6 6 1573 232 311 0 13 chr3 129543598 129543673 -30056110 + tRNA-Ala-GCY_ tRNA tRNA 2 75 0 6 1573 2442 146 23 5 chr3 129544835 129545222 -30054561 + ORR1B1 LTR MaLR 1 394 0 6 1573 810 234 71 0 chr3 129545248 129545432 -30054351 + B3A SINE B2 2 198 0 6 1573 3191 49 13 8 chr3 129545564 129545958 -30053825 + MTA_Mm LTR MaLR 1 396 0 6 1573 824 243 182 10 chr3 129546209 129546516 -30053267 + MTD LTR MaLR 51 410 -9 7 1573 1210 41 7 0 chr3 129546520 129546667 -30053116 + B1_Mus1 SINE Alu 1 148 0 7 1573 711 90 0 0 chr3 129546675 129546775 -30053008 + (GAAA)n Simple_repeat Simple_repeat 1 100 0 7 1573 707 244 4 114 chr3 129546933 129546978 -30052805 - ORR1D2 LTR MaLR -1 369 329 7 1573 823 196 0 0 chr3 129546978 129547111 -30052672 + B1_Mur2 SINE Alu 5 137 -12 7 1573 246 62 0 0 chr3 129547111 129547143 -30052640 + (CAAA)n Simple_repeat Simple_repeat 4 35 0 7 1573 707 244 4 114 chr3 129547143 129547323 -30052460 - ORR1D2 LTR MaLR -42 328 169 7 1573 478 43 29 0 chr3 129547695 129547764 -30052019 + (TTC)n Simple_repeat Simple_repeat 2 72 0 7 1573 22 35 0 0 chr3 129547867 129547896 -30051887 + AT_rich Low_complexity Low_complexity 1 29 0 7 1573 315 0 0 0 chr3 129548280 129548315 -30051468 + (TCC)n Simple_repeat Simple_repeat 3 37 0 7 1573 2968 60 49 13 chr3 129548327 129548713 -30051070 - MTB LTR MaLR 0 400 1 7 1573 252 149 0 0 chr3 129548921 129548968 -30050815 - MLT1H2 LTR MaLR -367 122 76 8 1573 1021 213 42 27 chr3 129549762 129550023 -30049760 + RMER15 LTR ERVL 311 575 0 8 1573 22 35 0 0 chr3 129550197 129550226 -30049557 + AT_rich Low_complexity Low_complexity 1 29 0 8 1573 1015 122 0 13 chr3 129550310 129550459 -30049324 - B1_Mur4 SINE Alu -2 148 2 8 1573 1387 213 96 41 chr3 129551867 129552303 -30047480 - RCHARR1 DNA MER1_type -388 586 127 8 1573 333 201 66 27 chr3 129552300 129552413 -30047370 - B1_Mur3 SINE Alu 0 120 1 8 1573 25 31 0 0 chr3 129552422 129552454 -30047329 + AT_rich Low_complexity Low_complexity 1 32 0 8 1573 1242 34 0 0 chr3 129552454 129552601 -30047182 - B1_Mm SINE Alu 0 147 1 8 1573 268 205 157 0 chr3 129552601 129552684 -30047099 - RCHARR1 DNA MER1_type -851 123 28 8 1573 391 263 8 48 chr3 129552872 129552996 -30046787 + B3A SINE B2 1 119 -79 8 1573 1176 36 0 0 chr3 129552996 129553134 -30046649 + B1_Mus1 SINE Alu 1 138 -10 8 1573 254 0 83 0 chr3 129553134 129553170 -30046613 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 9 1573 243 0 0 0 chr3 129553215 129553242 -30046541 + (CA)n Simple_repeat Simple_repeat 2 28 0 9 1573 762 11 0 0 chr3 129553242 129553328 -30046455 + (GA)n Simple_repeat Simple_repeat 2 88 0 9 1573 474 88 0 0 chr3 129554059 129554127 -30045656 + (TC)n Simple_repeat Simple_repeat 1 68 0 9 1573 239 330 22 27 chr3 129554284 129554468 -30045315 - L1M5 LINE L1 -3051 3095 2913 9 1573 22 56 0 0 chr3 129554613 129554649 -30045134 + AT_rich Low_complexity Low_complexity 1 36 0 9 1573 522 83 0 0 chr3 129554739 129554811 -30044972 + (TTTCC)n Simple_repeat Simple_repeat 3 74 0 9 1573 980 246 96 101 chr3 129554830 129554928 -30044855 - Lx8 LINE L1 -4 7469 7346 9 1573 549 0 0 0 chr3 129554928 129554989 -30044794 + (TTTTC)n Simple_repeat Simple_repeat 5 65 0 9 1573 980 246 96 101 chr3 129554989 129555288 -30044495 - Lx8 LINE L1 -128 7345 7074 9 1573 851 233 24 5 chr3 129555486 129555697 -30044086 - ID_B1 SINE B4 -9 215 1 9 1573 297 0 0 0 chr3 129555775 129555808 -30043975 + (T)n Simple_repeat Simple_repeat 1 33 0 1 1573 287 354 59 40 chr3 129556116 129556369 -30043414 - ORR1E LTR MaLR 0 359 102 1 1573 264 277 79 69 chr3 129556439 129556540 -30043243 - ORR1E LTR MaLR -271 108 7 1 1573 4903 110 23 7 chr3 129556663 129557371 -30042412 - Lx2 LINE L1 0 6997 6279 1 1573 30 45 0 0 chr3 129558729 129558773 -30041010 + AT_rich Low_complexity Low_complexity 1 44 0 1 1573 728 201 0 45 chr3 129558831 129558987 -30040796 - B1_Mur2 SINE Alu 0 149 1 1 1573 1446 71 0 5 chr3 129559079 129559263 -30040520 + B2_Mm2 SINE B2 2 184 -11 1 1573 677 45 0 11 chr3 129559263 129559353 -30040430 + (GGA)n Simple_repeat Simple_repeat 3 91 0 1 1573 1453 251 79 23 chr3 129559369 129559801 -30039982 - Lx8 LINE L1 -271 7202 6747 1 1573 2098 165 40 5 chr3 129559802 129559993 -30039790 - ORR1C2 LTR MaLR 0 384 189 1 1573 225 0 0 0 chr3 129559993 129560018 -30039765 + (CAGA)n Simple_repeat Simple_repeat 2 26 0 1 1573 5442 93 61 15 chr3 129560022 129560870 -30038913 + RMER17D LTR ERVK 1 887 -2 1 1573 2098 165 40 5 chr3 129560870 129561044 -30038739 - ORR1C2 LTR MaLR -196 188 7 1 1573 406 265 0 20 chr3 129561055 129561155 -30038628 - PB1D10 SINE Alu -15 102 5 1 1573 351 137 78 52 chr3 129561501 129561578 -30038205 - ID4_ SINE ID -4 79 1 1 1573 1287 121 5 0 chr3 129561917 129562107 -30037676 + B2_Mm1t SINE B2 1 191 -2 1 1573 771 211 67 13 chr3 129562117 129562266 -30037517 + RSINE1 SINE B4 3 159 -6 1 1573 1453 62 17 0 chr3 129562315 129562492 -30037291 + B2_Mm2 SINE B2 2 181 -14 1 1573 1205 249 30 118 chr3 129562644 129563041 -30036742 + MTE2a LTR MaLR 11 372 -7 1 1573 28 29 0 0 chr3 129563237 129563272 -30036511 + AT_rich Low_complexity Low_complexity 1 35 0 1 1573 2819 148 140 41 chr3 129563334 129563372 -30036411 - RMER19C LTR ERVK 0 611 585 1 1573 1366 87 16 5 chr3 129563372 129563558 -30036225 - B2_Mm2 SINE B2 -6 189 2 1 1573 2819 148 140 41 chr3 129563558 129564075 -30035708 - RMER19C LTR ERVK -27 584 1 1 1573 21 57 0 0 chr3 129564366 129564401 -30035382 + AT_rich Low_complexity Low_complexity 1 35 0 1 1573 723 237 80 70 chr3 129564522 129564735 -30035048 - MTD LTR MaLR 0 419 205 1 1573 21 0 0 0 chr3 129564830 129564851 -30034932 + AT_rich Low_complexity Low_complexity 1 21 0 1 1573 2045 105 6 112 chr3 129565383 129565440 -30034343 - ORR1A3 LTR MaLR 0 326 287 1 1573 598 12 12 0 chr3 129565440 129565521 -30034262 - L1Md_F2 LINE L1 0 6582 6501 1 1573 2045 105 6 112 chr3 129565521 129565828 -30033955 - ORR1A3 LTR MaLR -40 286 1 1 1573 235 401 97 19 chr3 129565975 129566181 -30033602 - LTR85c LTR Gypsy? -37 786 565 1 1573 259 343 14 27 chr3 129566967 129567114 -30032669 - L1M5 LINE L1 -850 5296 5152 1 1573 402 329 31 12 chr3 129567114 129567274 -30032509 + RSINE1 SINE B4 3 165 0 1 1573 255 369 128 19 chr3 129568936 129569248 -30030535 - LTR83 LTR ERVL 0 780 435 1 1573 369 43 0 0 chr3 129569492 129569539 -30030244 + (CA)n Simple_repeat Simple_repeat 1 47 0 1 1573 3189 83 6 100 chr3 129569657 129569727 -30030056 - RMER16 LTR ERVK 0 533 480 1 1573 1187 63 0 0 chr3 129569727 129569870 -30029913 + B1_Mm SINE Alu 2 144 -3 1 1573 3189 83 6 100 chr3 129569870 129570318 -30029465 - RMER16 LTR ERVK -54 479 64 1 1573 1015 209 40 22 chr3 129570614 129570839 -30028944 + B4A SINE B4 42 270 -22 1 1573 213 121 0 0 chr3 129570891 129570924 -30028859 + (CA)n Simple_repeat Simple_repeat 1 33 0 1 1573 461 191 9 0 chr3 129570928 129571033 -30028750 + (CAGA)n Simple_repeat Simple_repeat 2 107 0 1 1573 1920 126 26 68 chr3 129572092 129572432 -30027351 - ORR1A3 LTR MaLR 0 326 1 1 1573 616 281 144 38 chr3 129572564 129572856 -30026927 - MLT1B LTR MaLR -29 361 39 1 1573 329 386 42 18 chr3 129572992 129573158 -30026625 - MIRb SINE MIR -16 252 83 1 1573 260 294 66 42 chr3 129573294 129573461 -30026322 + L2a LINE L2 2090 2260 -1159 1 1573 1145 248 46 35 chr3 129573604 129573888 -30025895 + B4 SINE B4 2 288 -4 1 1573 306 159 0 0 chr3 129573976 129574045 -30025738 + GA-rich Low_complexity Low_complexity 2 70 0 1 1573 220 247 40 27 chr3 129574812 129574887 -30024896 + L2a LINE L2 3338 3413 -13 1 1573 2173 58 123 3 chr3 129575341 129575633 -30024150 - ORR1A2 LTR MaLR 0 327 1 1 1573 1114 87 11 28 chr3 129576212 129576390 -30023393 + L1Md_F2 LINE L1 6407 6581 -1 1 1573 432 301 96 89 chr3 129576415 129576572 -30023211 + ID_B1 SINE B4 10 167 -57 1 1573 271 218 238 25 chr3 129576506 129576586 -30023197 + PB1D10 SINE Alu 9 105 -12 1 1573 1344 75 40 0 chr3 129577555 129577728 -30022055 - B2_Mm2 SINE B2 -14 181 2 1 1573 201 154 0 0 chr3 129578259 129578298 -30021485 + (TTTG)n Simple_repeat Simple_repeat 4 42 0 1 1573 377 333 12 90 chr3 129578498 129578742 -30021041 - RMER15 LTR ERVL -16 559 335 1 1573 2065 113 128 14 chr3 129578793 129579161 -30020622 + RMER17C LTR ERVK 1 410 0 1 1573 1173 193 10 88 chr3 129579448 129579743 -30020040 + RLTR9A LTR ERVK 96 367 -1 1 1573 382 265 126 17 chr3 129579771 129579890 -30019893 - RSINE1 SINE B4 -31 134 3 1 1573 333 169 0 97 chr3 129579890 129579947 -30019836 + MTE2a LTR MaLR 330 379 0 1 1573 352 264 58 0 chr3 129580625 129580712 -30019071 + PB1D7 SINE Alu 28 119 -1 1 1573 768 63 176 30 chr3 129581183 129581314 -30018469 + B1_Mur4 SINE Alu 1 150 0 1 1573 24 53 0 0 chr3 129581596 129581634 -30018149 + GC_rich Low_complexity Low_complexity 1 38 0 1 1573 24 32 0 0 chr3 129581645 129581676 -30018107 + GC_rich Low_complexity Low_complexity 1 31 0 1 1573 539 232 64 0 chr3 129582732 129582857 -30016926 - ID_B1 SINE B4 -7 217 85 1 1573 459 0 0 0 chr3 129583073 129583124 -30016659 + (TG)n Simple_repeat Simple_repeat 2 52 0 1 1573 2813 69 24 5 chr3 129583559 129583939 -30015844 - L1_Mus3 LINE L1 -4 6634 6248 1 1573 214 300 102 55 chr3 129583968 129584095 -30015688 - L2a LINE L2 -7 3419 3287 1 1573 1382 81 11 5 chr3 129584675 129584861 -30014922 - B2_Mm2 SINE B2 -8 187 1 1 1573 217 103 51 0 chr3 129584871 129584910 -30014873 + T-rich Low_complexity Low_complexity 1 41 0 1 1573 1188 74 0 0 chr3 129584912 129585060 -30014723 - B1_Mus1 SINE Alu 0 148 1 1 1573 318 80 0 0 chr3 129585107 129585157 -30014626 + (TC)n Simple_repeat Simple_repeat 2 51 0 1 1573 603 341 106 24 chr3 129585205 129585460 -30014323 - B4A SINE B4 -8 284 9 1 1573 1072 108 0 150 chr3 129585693 129585855 -30013928 + B2_Mm2 SINE B2 2 156 -39 1 1573 216 0 0 0 chr3 129585855 129585879 -30013904 + (CAAT)n Simple_repeat Simple_repeat 2 25 0 1 1573 1072 108 0 150 chr3 129585879 129585923 -30013860 + B2_Mm2 SINE B2 157 177 -18 1 1573 302 323 169 14 chr3 129586052 129586336 -30013447 - L2a LINE L2 -1672 1747 1417 1 1573 1338 68 189 0 chr3 129586336 129586526 -30013257 + URR1A DNA MER1_type 1 226 0 1 1573 246 161 0 35 chr3 129587108 129587166 -30012617 + B3 SINE B2 155 210 -6 1 1573 455 279 15 30 chr3 129587401 129587534 -30012249 - RSINE1 SINE B4 -20 145 15 1 1573 234 263 18 0 chr3 129587702 129587759 -30012024 - L2a LINE L2 -19 3407 3350 1 1573 942 160 55 51 chr3 129588032 129588249 -30011534 - Lx5 LINE L1 0 7050 6833 1 1573 243 0 0 0 chr3 129588818 129588845 -30010938 + (TAA)n Simple_repeat Simple_repeat 2 28 0 1 1573 1002 196 93 0 chr3 129589030 129589234 -30010549 - URR1A DNA MER1_type -3 223 1 1 1573 436 173 147 52 chr3 129589358 129589474 -30010309 + MLT1A1 LTR MaLR 1 127 -281 1 1573 346 182 24 61 chr3 129589727 129589809 -30009974 + ID4_ SINE ID 2 80 -3 1 1573 234 174 0 0 chr3 129590211 129590257 -30009526 + (TATATG)n Simple_repeat Simple_repeat 3 48 0 1 1573 866 167 14 7 chr3 129590257 129590402 -30009381 - B1_Mus2 SINE Alu -1 146 1 1 1573 382 311 58 32 chr3 129590569 129590725 -30009058 - RSINE1 SINE B4 -2 163 4 1 1573 958 301 38 8 chr3 129592552 129592813 -30006970 + B4A SINE B4 3 271 -21 1 1573 387 0 0 0 chr3 129592830 129592873 -30006910 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 1573 220 300 56 14 chr3 129593854 129593925 -30005858 - ID2 SINE ID 0 83 10 1 1573 481 291 7 22 chr3 129593939 129594076 -30005707 - MLT1A0 LTR MaLR -219 146 12 1 1573 338 295 216 17 chr3 129594184 129594360 -30005423 - RMER15 LTR ERVL -15 560 350 1 1573 1879 120 6 107 chr3 129594391 129594462 -30005321 - ORR1A4 LTR MaLR 0 329 264 1 1573 3404 50 0 0 chr3 129594462 129594858 -30004925 - MTA_Mm LTR MaLR 0 396 1 1 1573 1879 120 6 107 chr3 129594858 129595150 -30004633 - ORR1A4 LTR MaLR -66 263 3 1 1573 1051 287 99 93 chr3 129595381 129596029 -30003754 - RMER15-int LTR ERVL -3 4996 4345 1 1573 304 302 158 20 chr3 129596089 129596241 -30003542 - RMER15 LTR ERVL -86 489 317 1 1573 394 287 86 13 chr3 129597205 129597262 -30002521 - RSINE1 SINE B4 -2 163 106 1 1573 369 0 0 0 chr3 129597262 129597303 -30002480 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 1573 394 287 86 13 chr3 129597303 129597397 -30002386 - RSINE1 SINE B4 -60 105 1 1 1573 186 133 0 0 chr3 129597598 129597628 -30002155 + (CA)n Simple_repeat Simple_repeat 1 30 0 1 1573 255 133 0 0 chr3 129599346 129599391 -30000392 + (TA)n Simple_repeat Simple_repeat 2 46 0 1 1573 596 203 207 11 chr3 129599391 129599565 -30000218 + B3 SINE B2 3 210 -6 1 1573 1544 179 160 8 chr3 129599602 129599984 -29999799 - RMER10A LTR ERVL 0 442 3 1 1573 747 50 0 0 chr3 129600061 129600161 -29999622 + (TATG)n Simple_repeat Simple_repeat 4 103 0 1 1573 808 221 41 21 chr3 129600161 129600355 -29999428 - B3 SINE B2 -18 198 1 1 1573 236 30 30 0 chr3 129601029 129601062 -29998721 + (TTTTTG)n Simple_repeat Simple_repeat 2 35 0 1 1573 472 268 85 43 chr3 129601223 129601387 -29998396 + ORR1E LTR MaLR 1 171 -188 1 1573 338 93 37 0 chr3 129601599 129601653 -29998130 - ORR1B2 LTR MaLR 0 367 312 1 1573 504 159 12 72 chr3 129601659 129601770 -29998013 - B1_Mur4 SINE Alu -1 149 44 1 1573 1990 175 14 14 chr3 129601774 129602128 -29997655 - ORR1B1 LTR MaLR -40 354 1 1 1573 405 191 78 11 chr3 129602301 129602391 -29997392 + PB1D7 SINE Alu 23 118 -2 2 1573 359 240 231 38 chr3 129602452 129602601 -29997182 + B3 SINE B2 1 183 -33 2 1573 188 35 35 0 chr3 129602601 129602630 -29997153 + (TG)n Simple_repeat Simple_repeat 2 31 0 2 1573 466 272 10 0 chr3 129602648 129602751 -29997032 + PB1D10 SINE Alu 6 109 -8 2 1573 23 33 0 0 chr3 129603039 129603069 -29996714 + AT_rich Low_complexity Low_complexity 1 30 0 2 1573 221 146 0 20 chr3 129603511 129603560 -29996223 + (CA)n Simple_repeat Simple_repeat 2 49 0 2 1573 244 171 345 18 chr3 129603805 129603918 -29995865 + ID_B1 SINE B4 20 169 -55 2 1573 183 129 0 0 chr3 129604015 129604046 -29995737 + (CAA)n Simple_repeat Simple_repeat 2 32 0 2 1573 2403 133 59 17 chr3 129605902 129606306 -29993477 + MTC LTR MaLR 1 421 0 2 1573 260 236 18 0 chr3 129606371 129606426 -29993357 + RSINE1 SINE B4 5 60 -105 2 1573 997 89 153 12 chr3 129607265 129607435 -29992348 - B2_Mm2 SINE B2 0 195 2 2 1573 279 303 0 48 chr3 129607468 129607572 -29992211 + PB1 SINE Alu 1 99 -28 2 1573 384 339 15 0 chr3 129607585 129607715 -29992068 - MER3 DNA MER1_type -76 133 2 2 1573 899 161 7 0 chr3 129608201 129608344 -29991439 + B1_Mur1 SINE Alu 6 149 0 2 1573 816 212 20 89 chr3 129608553 129608755 -29991028 + URR1B DNA MER1_type 3 190 -35 2 1573 808 293 66 10 chr3 129610080 129610476 -29989307 - L1MA4 LINE L1 -379 5921 5504 2 1573 249 305 0 0 chr3 129610476 129610650 -29989133 + C-rich Low_complexity Low_complexity 3 176 0 2 1573 395 312 6 34 chr3 129610652 129610831 -29988952 + CT-rich Low_complexity Low_complexity 1 174 0 2 1573 313 278 71 31 chr3 129610855 129610997 -29988786 - L1MA4 LINE L1 -805 5492 5326 2 1573 979 153 0 0 chr3 129610997 129611147 -29988636 - B1_Mur4 SINE Alu 0 150 1 2 1573 397 299 18 102 chr3 129611147 129611457 -29988326 - L1MA4 LINE L1 -561 5325 5064 2 1573 387 280 136 0 chr3 129611505 129611637 -29988146 - RSINE1 SINE B4 -5 160 11 2 1573 1382 274 168 55 chr3 129611696 129612303 -29987480 - L1MA4 LINE L1 -1200 4943 4223 2 1573 607 213 177 17 chr3 129612303 129612484 -29987299 - B3 SINE B2 -3 213 4 2 1573 1382 274 168 55 chr3 129612484 129613021 -29986762 - L1MA4 LINE L1 -1921 4222 3670 2 1573 241 208 227 10 chr3 129613114 129613211 -29986572 + PB1D7 SINE Alu 1 118 -2 2 1573 191 232 155 28 chr3 129613530 129613601 -29986182 - MIRm SINE MIR -143 133 54 2 1573 311 157 319 92 chr3 129613780 129613899 -29985884 + B1_Mus1 SINE Alu 1 146 -2 2 1573 391 209 278 35 chr3 129614455 129614599 -29985184 + B3A SINE B2 4 182 -16 2 1573 280 179 10 192 chr3 129615593 129615697 -29984086 - RLTR21 LTR ERVK 0 1572 1488 2 1573 2089 113 3 12 chr3 129615721 129616051 -29983732 - RMER12 LTR ERVK -995 327 1 2 1573 468 221 118 37 chr3 129618264 129618400 -29981383 - B1_Mur2 SINE Alu -2 147 1 2 1573 1709 183 85 30 chr3 129619171 129619570 -29980213 + MTC LTR MaLR 1 421 0 2 1573 1230 150 56 5 chr3 129619599 129619813 -29979970 - URR1B DNA MER1_type 0 225 1 2 1573 753 152 65 0 chr3 129620281 129620419 -29979364 + B1_Mus2 SINE Alu 1 147 0 2 1573 499 256 22 15 chr3 129620578 129620713 -29979070 - B1_Mur2 SINE Alu -11 138 3 2 1573 409 124 60 30 chr3 129620853 129620953 -29978830 - Lx2B LINE L1 -4 6996 6894 2 1573 249 33 0 0 chr3 129621033 129621063 -29978720 + (CAAT)n Simple_repeat Simple_repeat 3 32 0 2 1573 305 304 62 9 chr3 129622149 129622262 -29977521 + L1M2 LINE L1 2347 2465 -3678 2 1573 405 136 0 0 chr3 129622262 129622328 -29977455 + (TA)n Simple_repeat Simple_repeat 2 67 0 2 1573 301 237 57 35 chr3 129622381 129622488 -29977295 + B1F1 SINE Alu 35 143 -6 2 1573 380 82 16 0 chr3 129622536 129622597 -29977186 + (TG)n Simple_repeat Simple_repeat 1 62 0 2 1573 245 333 17 119 chr3 129622685 129622978 -29976805 + L1_Mur2 LINE L1 2614 2876 -3001 2 1573 230 293 0 42 chr3 129623091 129623187 -29976596 - L1M2 LINE L1 -2662 3481 3390 2 1573 1231 298 108 50 chr3 129623193 129623626 -29976157 + L1M2 LINE L1 3080 3549 -2594 2 1573 1509 77 0 5 chr3 129623626 129623821 -29975962 - B2_Mm2 SINE B2 -1 194 1 2 1573 1231 298 108 50 chr3 129623821 129624333 -29975450 + L1M2 LINE L1 3550 4080 -2063 2 1573 236 260 47 19 chr3 129625313 129625419 -29974364 + L1M2 LINE L1 1895 2003 -4846 2 1573 747 247 78 48 chr3 129625456 129625686 -29974097 + MTD LTR MaLR 23 259 -160 2 1573 384 237 11 21 chr3 129625882 129625977 -29973806 - L1M3 LINE L1 -1421 4719 4626 2 1573 759 202 202 0 chr3 129625990 129626043 -29973740 - B3 SINE B2 -2 214 157 2 1573 306 0 0 0 chr3 129626043 129626077 -29973706 + (TG)n Simple_repeat Simple_repeat 2 35 0 2 1573 759 202 202 0 chr3 129626077 129626201 -29973582 - B3 SINE B2 -60 156 2 2 1573 261 0 0 0 chr3 129626215 129626244 -29973539 + (T)n Simple_repeat Simple_repeat 1 29 0 2 1573 1156 68 0 7 chr3 129626251 129626398 -29973385 - B1_Mus2 SINE Alu -1 146 1 2 1573 1213 179 114 4 chr3 129627164 129627445 -29972338 - MTD LTR MaLR 0 419 108 2 1573 532 284 70 27 chr3 129627541 129627841 -29971942 + L1MCa LINE L1 907 1219 -5289 2 1573 2442 82 9 0 chr3 129628144 129628463 -29971320 + ORR1A2 LTR MaLR 2 323 -4 2 1573 663 78 0 0 chr3 129628491 129628581 -29971202 + (TA)n Simple_repeat Simple_repeat 1 90 0 2 1573 369 255 40 10 chr3 129628782 129628881 -29970902 + L1MCa LINE L1 1 102 -6406 2 1573 364 229 12 0 chr3 129628895 129628978 -29970805 + 5S rRNA rRNA 7 90 -31 2 1573 349 326 63 28 chr3 129629094 129629236 -29970547 + L1MCa LINE L1 357 503 -6005 2 1573 1296 84 0 0 chr3 129630006 129630185 -29969598 + (TTCTC)n Simple_repeat Simple_repeat 2 180 0 2 1574 1110 248 125 16 chr3 129630214 129630499 -29969284 - MTD LTR MaLR -4 415 100 2 1574 1514 211 50 22 chr3 129630499 129630857 -29968926 - ORR1D1 LTR MaLR -2 372 5 2 1574 1110 248 125 16 chr3 129630857 129630940 -29968843 - MTD LTR MaLR -320 99 7 2 1574 261 0 0 0 chr3 129630944 129630973 -29968810 + (CAA)n Simple_repeat Simple_repeat 2 30 0 2 1574 336 284 0 0 chr3 129630990 129631071 -29968712 - ID_B1 SINE B4 -15 209 129 2 1574 560 14 14 0 chr3 129631427 129631496 -29968287 + (TAGA)n Simple_repeat Simple_repeat 2 71 0 2 1574 589 227 68 0 chr3 129631598 129631730 -29968053 + B1_Mur1 SINE Alu 1 141 -8 2 1574 1517 6 11 0 chr3 129632750 129632927 -29966856 + (TATATG)n Simple_repeat Simple_repeat 2 180 0 2 1574 544 142 22 43 chr3 129632936 129633120 -29966663 + (TA)n Simple_repeat Simple_repeat 1 180 0 2 1574 285 128 0 0 chr3 129633652 129633699 -29966084 + (A)n Simple_repeat Simple_repeat 1 47 0 2 1574 273 181 0 194 chr3 129634344 129634550 -29965233 + polypyrimidine Low_complexity Low_complexity 4 169 0 2 1574 425 291 89 15 chr3 129635181 129635383 -29964400 + L2a LINE L2 3210 3426 0 2 1574 352 208 120 19 chr3 129635486 129635594 -29964189 - B3 SINE B2 0 216 98 2 1574 452 283 9 0 chr3 129636217 129636323 -29963460 - PB1D10 SINE Alu -10 107 1 2 1574 35 0 0 0 chr3 129636385 129636420 -29963363 + AT_rich Low_complexity Low_complexity 1 35 0 2 1574 723 237 100 0 chr3 129636756 129636946 -29962837 + B3 SINE B2 2 210 -6 2 1574 596 214 35 14 chr3 129637134 129637276 -29962507 + B1_Mur2 SINE Alu 5 149 0 2 1574 275 0 19 74 chr3 129637481 129637535 -29962248 + (CAAAAA)n Simple_repeat Simple_repeat 3 53 0 2 1574 570 199 14 56 chr3 129637726 129637886 -29961897 + ORR1D1 LTR MaLR 1 146 -248 2 1574 1233 185 82 13 chr3 129637914 129638090 -29961693 + ORR1C2 LTR MaLR 41 251 -133 2 1574 267 31 0 0 chr3 129638090 129638122 -29961661 + (CCTG)n Simple_repeat Simple_repeat 3 34 0 2 1574 1233 179 81 11 chr3 129638122 129638252 -29961531 + ORR1C2 LTR MaLR 252 384 0 2 1574 733 237 0 0 chr3 129638402 129638541 -29961242 - B1_Mm SINE Alu -8 139 1 2 1574 836 256 12 24 chr3 129638999 129639207 -29960576 - B3 SINE B2 -1 215 1 2 1574 22 88 0 0 chr3 129639277 129639334 -29960449 + AT_rich Low_complexity Low_complexity 1 57 0 2 1574 291 244 11 109 chr3 129639978 129640070 -29959713 + ID4_ SINE ID 1 83 0 2 1574 181 57 0 54 chr3 129641452 129641489 -29958294 + (TA)n Simple_repeat Simple_repeat 1 35 0 2 1574 255 305 100 41 chr3 129641507 129641777 -29958006 + L1ME3A LINE L1 5702 5987 -186 2 1574 1194 68 0 0 chr3 129642365 129642511 -29957272 + B1_Mm SINE Alu 2 147 0 2 1574 241 111 0 45 chr3 129642513 129642579 -29957204 + A-rich Low_complexity Low_complexity 3 65 0 2 1574 23 54 0 0 chr3 129642584 129642621 -29957162 + AT_rich Low_complexity Low_complexity 1 37 0 2 1574 1094 7 28 0 chr3 129642701 129642844 -29956939 + (TG)n Simple_repeat Simple_repeat 2 148 0 2 1574 427 226 9 56 chr3 129642885 129642993 -29956790 - MER44D DNA MER2_type -567 138 36 2 1574 226 294 71 52 chr3 129644015 129644169 -29955614 + YREP_Mm Unknown Unknown 156 312 -1500 2 1574 673 254 7 0 chr3 129644032 129644170 -29955613 - ID_B1 SINE B4 -2 222 84 2 1574 197 318 47 0 chr3 129645105 129645190 -29954593 + MIRb SINE MIR 130 218 -50 2 1574 1388 182 64 11 chr3 129645304 129645587 -29954196 + ORR1C2 LTR MaLR 87 384 0 2 1574 239 360 52 9 chr3 129645698 129645813 -29953970 + B1F2 SINE Alu 30 149 0 2 1574 661 239 0 7 chr3 129645838 129645973 -29953810 + B1_Mur2 SINE Alu 14 147 -2 2 1574 234 239 0 0 chr3 129646050 129646096 -29953687 - LTR16E1 LTR ERVL -2 536 491 2 1574 274 198 24 47 chr3 129646096 129646181 -29953602 + B1_Mur1 SINE Alu 66 148 -1 2 1574 612 282 23 34 chr3 129646392 129646606 -29953177 - ID_B1 SINE B4 -2 290 80 2 1574 201 121 0 0 chr3 129646805 129646838 -29952945 + (CA)n Simple_repeat Simple_repeat 2 34 0 2 1574 3383 183 149 36 chr3 129648036 129648053 -29951730 - Lx7 LINE L1 0 7696 7686 2 1574 2552 74 6 15 chr3 129648053 129648396 -29951387 + L1_Mus3 LINE L1 6298 6637 -1 2 1574 3383 183 149 36 chr3 129648396 129648569 -29951214 - Lx7 LINE L1 -11 7685 7449 2 1574 330 67 0 0 chr3 129648569 129648614 -29951169 + (CA)n Simple_repeat Simple_repeat 1 45 0 2 1574 3383 183 149 36 chr3 129648614 129649236 -29950547 - Lx7 LINE L1 -248 7448 6791 2 1574 525 255 52 68 chr3 129649395 129649647 -29950136 - MLT2F LTR ERVL -11 652 405 2 1574 455 285 87 35 chr3 129649652 129649982 -29949801 - MLT1A0 LTR MaLR -5 369 1 3 1574 1039 92 28 14 chr3 129650102 129650246 -29949537 + B1_Mus1 SINE Alu 2 147 -1 3 1574 238 271 51 0 chr3 129650301 129650360 -29949423 - ID_B1 SINE B4 -6 218 157 3 1574 425 309 21 27 chr3 129650598 129650784 -29948999 + L1MD2 LINE L1 6151 6335 -24 3 1574 588 79 0 0 chr3 129651815 129651904 -29947879 + L1_Mus3 LINE L1 6548 6636 -2 3 1574 336 270 108 0 chr3 129651973 129652084 -29947699 + L1MA8 LINE L1 6138 6260 -31 3 1574 401 325 126 43 chr3 129652363 129652688 -29947095 + MLT1A LTR MaLR 1 352 -22 3 1574 261 0 0 0 chr3 129653105 129653134 -29946649 + (TG)n Simple_repeat Simple_repeat 1 29 0 3 1574 774 131 21 0 chr3 129653134 129653279 -29946504 + GA-rich Low_complexity Low_complexity 2 149 0 3 1574 26 0 0 0 chr3 129653344 129653370 -29946413 + AT_rich Low_complexity Low_complexity 1 26 0 3 1574 352 273 112 28 chr3 129653819 129653962 -29945821 + B4 SINE B4 16 170 -122 3 1574 383 206 0 0 chr3 129654147 129654220 -29945563 + B3 SINE B2 5 77 -139 3 1574 697 185 0 0 chr3 129654433 129654552 -29945231 - B1_Mm SINE Alu -28 119 1 3 1574 1021 170 48 0 chr3 129654793 129654999 -29944784 - MTD LTR MaLR -5 414 199 3 1574 261 111 84 24 chr3 129654999 129655082 -29944701 + (TA)n Simple_repeat Simple_repeat 2 89 0 3 1574 259 279 16 0 chr3 129655094 129655155 -29944628 - MTD LTR MaLR -255 166 105 3 1574 471 259 0 41 chr3 129655157 129655278 -29944505 + B3A SINE B2 3 118 -80 3 1574 886 116 7 7 chr3 129655278 129655426 -29944357 + (GGAA)n Simple_repeat Simple_repeat 4 151 0 3 1574 415 250 9 28 chr3 129655429 129655536 -29944247 - MTD LTR MaLR -302 119 15 3 1574 873 242 93 77 chr3 129656299 129656612 -29943171 + ORR1E LTR MaLR 1 318 -41 3 1574 1078 61 0 13 chr3 129657401 129657551 -29942232 + B1_Mus1 SINE Alu 1 148 0 3 1574 21 23 0 64 chr3 129657589 129657636 -29942147 + AT_rich Low_complexity Low_complexity 1 44 0 3 1574 370 277 79 55 chr3 129658596 129658760 -29941023 + LTR41 LTR ERVL 22 189 -579 3 1574 217 219 15 30 chr3 129660106 129660172 -29939611 + (TTG)n Simple_repeat Simple_repeat 2 66 0 3 1574 1126 129 42 9 chr3 129660183 129660412 -29939371 + ORR1C2 LTR MaLR 1 250 -109 3 1574 207 0 0 0 chr3 129660423 129660446 -29939337 + (C)n Simple_repeat Simple_repeat 1 23 0 3 1574 753 106 0 0 chr3 129660847 129660960 -29938823 + (TC)n Simple_repeat Simple_repeat 1 113 0 3 1574 1081 61 0 0 chr3 129660964 129661095 -29938688 - B1_Mus1 SINE Alu -15 133 3 3 1574 219 254 30 0 chr3 129662544 129662611 -29937172 + B1F2 SINE Alu 3 71 -78 3 1574 390 255 10 20 chr3 129662827 129662927 -29936856 - PB1D10 SINE Alu -3 114 16 3 1574 493 264 58 0 chr3 129663725 129663846 -29935937 + RSINE1 SINE B4 3 130 -35 3 1574 417 270 143 0 chr3 129663883 129664009 -29935774 + B1F2 SINE Alu 3 146 -3 3 1574 593 261 138 5 chr3 129664201 129664390 -29935393 + ID_B1 SINE B4 1 214 -10 3 1574 416 254 121 14 chr3 129664517 129664657 -29935126 + B3A SINE B2 14 168 -30 3 1574 294 316 0 39 chr3 129664876 129664978 -29934805 + B3A SINE B2 5 102 -96 3 1574 256 327 0 65 chr3 129665791 129665808 -29933975 + B4 SINE B4 69 78 -214 3 1574 302 259 138 0 chr3 129665808 129665924 -29933859 + PB1 SINE Alu 1 132 -17 3 1574 652 169 80 8 chr3 129666637 129666762 -29933021 + B1_Mur2 SINE Alu 1 134 -15 3 1574 354 138 0 0 chr3 129666770 129666828 -29932955 + (TAA)n Simple_repeat Simple_repeat 3 60 0 3 1574 313 264 120 62 chr3 129666978 129667253 -29932530 + B4 SINE B4 2 292 0 3 1574 355 149 40 24 chr3 129667254 129667378 -29932405 + (CA)n Simple_repeat Simple_repeat 1 126 0 3 1574 1415 62 23 0 chr3 129668224 129668400 -29931383 + B2_Mm2 SINE B2 2 181 -14 3 1574 406 64 330 9 chr3 129668445 129668554 -29931229 + B2_Mm2 SINE B2 49 192 -3 3 1574 311 123 35 0 chr3 129668605 129668662 -29931121 + GA-rich Low_complexity Low_complexity 1 59 0 3 1574 282 116 0 0 chr3 129668941 129668984 -29930799 + (A)n Simple_repeat Simple_repeat 1 43 0 3 1574 881 208 115 0 chr3 129668991 129669174 -29930609 + B3 SINE B2 8 211 -5 3 1574 1168 62 0 0 chr3 129670266 129670410 -29929373 - B1_Mm SINE Alu 0 147 4 3 1574 262 328 56 0 chr3 129673294 129673419 -29926364 + ID_B1 SINE B4 83 214 -10 3 1574 609 235 7 36 chr3 129674362 129674499 -29925284 + B1_Mur1 SINE Alu 9 141 -8 3 1574 2327 148 18 101 chr3 129674535 129674873 -29924910 - MTC LTR MaLR -2 419 113 3 1574 947 55 148 0 chr3 129674873 129675001 -29924782 + B1_Mm SINE Alu 1 147 0 3 1574 2327 148 18 101 chr3 129675001 129675119 -29924664 - MTC LTR MaLR -309 112 1 3 1574 16980 140 30 13 chr3 129675590 129676719 -29923064 - L1_Mm LINE L1 -291 5592 4460 3 1574 359 0 43 0 chr3 129676719 129676765 -29923018 + (TTTA)n Simple_repeat Simple_repeat 1 48 0 3 1574 1107 71 7 0 chr3 129676767 129676907 -29922876 - B1_Mm SINE Alu -6 141 1 3 1574 16980 140 30 13 chr3 129676907 129678656 -29921127 - L1_Mm LINE L1 -1424 4459 2663 3 1574 348 257 12 176 chr3 129678705 129678875 -29920908 - ID_B1 SINE B4 -2 222 81 3 1574 1908 158 70 3 chr3 129678943 129679287 -29920496 + ORR1B2 LTR MaLR 1 367 0 3 1574 1690 140 6 51 chr3 129679659 129679990 -29919793 - ORR1A4 LTR MaLR -8 321 6 3 1574 672 77 0 0 chr3 129680026 129680117 -29919666 + (TTCC)n Simple_repeat Simple_repeat 2 92 0 3 1574 1074 72 25 12 chr3 129680141 129680465 -29919318 + (TTTC)n Simple_repeat Simple_repeat 1 328 0 3 1574 328 222 0 0 chr3 129681032 129681095 -29918688 + tRNA-Ala-GCY_ tRNA tRNA 4 66 -9 3 1574 507 60 0 0 chr3 129681098 129681165 -29918618 + (GGAA)n Simple_repeat Simple_repeat 4 70 0 3 1574 1620 32 5 0 chr3 129681430 129681616 -29918167 - B2_Mm1t SINE B2 -5 188 2 3 1574 493 197 101 50 chr3 129682156 129682295 -29917488 - B1_Mur1 SINE Alu -1 148 3 3 1574 480 18 0 0 chr3 129682329 129682386 -29917397 + (TG)n Simple_repeat Simple_repeat 1 57 0 3 1574 478 205 114 8 chr3 129682590 129682713 -29917070 + RSINE1 SINE B4 2 137 -28 3 1574 236 250 26 26 chr3 129682787 129682865 -29916918 - MTD LTR MaLR -1 420 343 3 1574 548 258 103 42 chr3 129682877 129683140 -29916643 - MTD LTR MaLR -140 279 1 3 1574 472 190 90 0 chr3 129683502 129683602 -29916181 - RSINE1 SINE B4 -55 110 2 3 1574 605 272 52 28 chr3 129683834 129684046 -29915737 + ID_B1 SINE B4 5 221 -3 3 1574 1114 45 0 0 chr3 129684287 129684420 -29915363 - B1_Mus1 SINE Alu -14 134 2 3 1574 551 279 8 0 chr3 129684426 129684555 -29915228 - ID_B1 SINE B4 0 224 95 3 1574 280 253 53 0 chr3 129685023 129685098 -29914685 + RSINE1 SINE B4 83 161 -4 3 1574 193 270 52 39 chr3 129685218 129685295 -29914488 + MIR SINE MIR 30 107 -101 3 1574 1202 48 0 7 chr3 129687450 129687598 -29912185 - B1_Mm SINE Alu 0 147 1 3 1574 858 55 8 1 chr3 129687618 129687741 -29912042 + B1_Mus1 SINE Alu 27 148 0 3 1574 982 194 47 24 chr3 129688143 129688354 -29911429 + B3 SINE B2 1 216 0 3 1574 1034 161 57 0 chr3 129688411 129688603 -29911180 - B3 SINE B2 -13 203 1 3 1574 493 275 30 22 chr3 129688693 129688827 -29910956 - B1_Mur1 SINE Alu -7 142 8 3 1574 333 280 93 0 chr3 129688860 129688967 -29910816 - PB1D10 SINE Alu 0 117 1 3 1574 198 0 0 0 chr3 129689056 129689078 -29910705 + (T)n Simple_repeat Simple_repeat 1 22 0 3 1574 1256 7 0 20 chr3 129689078 129689228 -29910555 - B1_Mm SINE Alu 0 147 1 3 1574 287 282 158 13 chr3 129689555 129689713 -29910070 + L1MB7 LINE L1 5895 6075 -109 3 1574 286 211 62 95 chr3 129689833 129689948 -29909835 + B1_Mur4 SINE Alu 2 137 -13 3 1574 204 40 0 0 chr3 129689948 129689973 -29909810 + (CAA)n Simple_repeat Simple_repeat 1 25 0 3 1574 286 209 10 104 chr3 129689973 129689995 -29909788 + B1_Mur4 SINE Alu 138 150 0 3 1574 248 325 67 19 chr3 129690382 129690592 -29909191 + RMER15 LTR ERVL 356 575 0 3 1574 881 229 34 10 chr3 129690922 129691129 -29908654 + B3 SINE B2 1 212 -4 3 1574 352 253 36 96 chr3 129691138 129691304 -29908479 - B3 SINE B2 0 216 61 3 1574 226 200 20 20 chr3 129693148 129693199 -29906584 + GA-rich Low_complexity Low_complexity 2 52 0 3 1574 939 257 9 0 chr3 129694599 129694813 -29904970 + B3 SINE B2 1 216 0 3 1574 279 173 0 0 chr3 129694913 129694965 -29904818 + (TA)n Simple_repeat Simple_repeat 1 52 0 3 1574 594 263 24 67 chr3 129694967 129695175 -29904608 - B3 SINE B2 -13 203 5 3 1574 630 250 22 0 chr3 129695304 129695440 -29904343 + RSINE1 SINE B4 5 143 -22 3 1574 591 289 22 11 chr3 129695511 129695693 -29904090 + B3 SINE B2 3 186 -30 3 1574 1941 144 16 6 chr3 129698051 129698372 -29901411 + Lx LINE L1 6325 6648 -6 3 1574 1302 134 18 5 chr3 129700001 129700219 -29899564 - URR1A DNA MER1_type -5 221 1 3 1574 298 283 37 19 chr3 129700233 129700341 -29899442 - PB1D10 SINE Alu -2 115 6 3 1574 551 273 32 0 chr3 129700828 129700982 -29898801 + B3 SINE B2 12 170 -46 3 1574 225 0 0 0 chr3 129702731 129702756 -29897027 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 3 1574 22 70 0 0 chr3 129702827 129702870 -29896913 + AT_rich Low_complexity Low_complexity 1 43 0 3 1574 810 238 69 5 chr3 129702894 129703097 -29896686 - B3 SINE B2 0 216 1 3 1574 32 34 0 33 chr3 129703103 129703128 -29896655 + AT_rich Low_complexity Low_complexity 1 24 0 3 1574 315 279 25 12 chr3 129703128 129703208 -29896575 - ID4_ SINE ID -2 81 1 3 1574 32 34 0 33 chr3 129703208 129703243 -29896540 + AT_rich Low_complexity Low_complexity 1 35 0 3 1574 1405 90 0 5 chr3 129703246 129703435 -29896348 + B2_Mm2 SINE B2 2 189 -6 4 1574 247 149 29 29 chr3 129703772 129703841 -29895942 + (TATG)n Simple_repeat Simple_repeat 3 71 0 4 1574 200 191 0 0 chr3 129703865 129703907 -29895876 + (TG)n Simple_repeat Simple_repeat 2 43 0 4 1574 426 281 46 46 chr3 129703951 129704126 -29895657 - B4A SINE B4 -117 175 1 4 1574 293 207 0 17 chr3 129704320 129704379 -29895404 - ID4 SINE ID -10 73 16 4 1574 456 235 16 73 chr3 129706715 129706839 -29892944 + PB1D9 SINE Alu 4 120 0 4 1574 31 0 0 0 chr3 129707094 129707125 -29892658 + AT_rich Low_complexity Low_complexity 1 31 0 4 1574 390 276 0 0 chr3 129707696 129707794 -29891989 - RSINE1 SINE B4 -6 159 62 4 1574 441 250 92 33 chr3 129709846 129709999 -29889784 + B4A SINE B4 5 166 -126 4 1574 205 164 54 18 chr3 129710111 129710167 -29889616 + (CA)n Simple_repeat Simple_repeat 1 58 0 4 1574 998 146 127 29 chr3 129710802 129711007 -29888776 - URR1B DNA MER1_type 0 225 1 4 1574 966 230 61 0 chr3 129711488 129711684 -29888099 - B3 SINE B2 -5 211 4 4 1574 23 33 0 0 chr3 129711736 129711766 -29888017 + AT_rich Low_complexity Low_complexity 1 30 0 4 1574 218 311 99 26 chr3 129712245 129712397 -29887386 + B3 SINE B2 23 185 -31 4 1574 259 239 185 0 chr3 129714112 129714204 -29885579 + B3 SINE B2 29 137 -79 4 1574 21 0 0 0 chr3 129715159 129715180 -29884603 + AT_rich Low_complexity Low_complexity 1 21 0 4 1574 674 215 79 6 chr3 129715358 129715536 -29884247 + B3 SINE B2 1 191 -25 4 1574 242 235 56 45 chr3 129716134 129716223 -29883560 - Lx9 LINE L1 -1752 5892 5803 4 1574 220 227 29 57 chr3 129716778 129716848 -29882935 + B1F SINE Alu 82 149 0 4 1574 224 250 30 45 chr3 129716857 129716924 -29882859 + B4A SINE B4 80 145 -147 4 1574 339 252 16 116 chr3 129716870 129716991 -29882792 + PB1D10 SINE Alu 6 114 -3 4 1574 725 312 39 48 chr3 129717014 129717344 -29882439 + L1MB5 LINE L1 5738 6064 -110 4 1574 569 298 131 14 chr3 129717482 129717958 -29881825 + L1MB7 LINE L1 5381 5897 -277 4 1574 525 196 0 0 chr3 129718152 129718244 -29881539 + B1_Mur1 SINE Alu 53 144 -5 4 1574 418 171 171 0 chr3 129718320 129718425 -29881358 + B1_Mur1 SINE Alu 21 143 -6 4 1574 863 222 103 0 chr3 129718457 129718642 -29881141 + B3 SINE B2 1 204 -12 4 1574 641 201 28 14 chr3 129718649 129718790 -29880993 + B3 SINE B2 1 143 -73 4 1574 496 246 7 29 chr3 129718798 129718936 -29880847 + RSINE1 SINE B4 31 165 0 4 1574 21 36 0 0 chr3 129718963 129718991 -29880792 + AT_rich Low_complexity Low_complexity 1 28 0 4 1574 315 336 37 0 chr3 129719088 129719222 -29880561 + Lx7 LINE L1 7160 7298 -398 4 1574 322 278 30 194 chr3 129721363 129721595 -29878188 + B3A SINE B2 1 194 -4 4 1574 242 299 41 10 chr3 129721600 129721698 -29878085 + L1MC4 LINE L1 7260 7360 -682 4 1574 360 295 61 15 chr3 129721784 129721915 -29877868 + ID_B1 SINE B4 81 217 -7 4 1574 803 299 113 34 chr3 129722066 129722454 -29877329 + RMER5 LTR ERV1 77 495 -39 4 1574 463 234 71 18 chr3 129724711 129724824 -29874959 - PB1D7 SINE Alu 0 120 2 4 1574 339 164 0 0 chr3 129725267 129725328 -29874455 + (TA)n Simple_repeat Simple_repeat 1 61 0 4 1574 225 0 0 0 chr3 129726258 129726283 -29873500 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 4 1574 237 94 107 54 chr3 129727201 129727257 -29872526 + Charlie2b DNA MER1_type 577 635 -2147 4 1574 557 207 0 26 chr3 129727265 129727379 -29872404 + B1_Mur1 SINE Alu 39 149 0 4 1574 270 190 84 22 chr3 129730450 129730563 -29869220 - MurERV4-int LTR ERVK -3231 2175 2094 4 1574 493 267 108 16 chr3 129730979 129731173 -29868610 - MurERV4-int LTR ERVK -2373 2887 2676 4 1574 211 286 159 36 chr3 129734037 129734175 -29865608 + MIR SINE MIR 105 259 -3 4 1574 267 299 39 0 chr3 129734202 129734279 -29865504 - ID_B1 SINE B4 -3 221 142 4 1574 789 256 45 42 chr3 129734581 129734870 -29864913 + B4A SINE B4 3 292 0 4 1574 572 275 120 6 chr3 129734972 129735155 -29864628 - MER2 DNA MER2_type -54 291 88 4 1574 333 345 132 11 chr3 129735546 129735728 -29864055 + MIRb SINE MIR 55 258 -10 4 1574 832 196 71 104 chr3 129737272 129737540 -29862243 - MLT1B LTR MaLR -131 259 1 4 1574 779 254 142 79 chr3 129738530 129739014 -29860769 - RMER13A LTR ERVK -82 545 30 4 1574 1985 218 162 67 chr3 129739138 129739840 -29859943 + RMER12B LTR ERVK 427 1195 -209 4 1574 189 0 0 0 chr3 129739840 129739861 -29859922 + (TG)n Simple_repeat Simple_repeat 1 21 0 4 1574 378 0 0 0 chr3 129739861 129739902 -29859881 + (GA)n Simple_repeat Simple_repeat 1 42 0 4 1574 8370 44 0 4 chr3 129739913 129740897 -29858886 - L1_Mus1 LINE L1 0 6567 5588 4 1574 3506 68 13 7 chr3 129740913 129741373 -29858410 + L1_Mus1 LINE L1 5131 5593 -290 4 1574 301 204 39 119 chr3 129741494 129741614 -29858169 + RMER12B LTR ERVK 1309 1404 0 4 1574 377 336 72 51 chr3 129741791 129742026 -29857757 - L1M5 LINE L1 -926 5220 4981 4 1574 267 353 53 105 chr3 129742048 129742295 -29857488 + L2b LINE L2 3102 3335 -40 4 1574 833 179 0 7 chr3 129742710 129742856 -29856927 - B1_Mus1 SINE Alu -1 147 3 4 1574 426 20 0 0 chr3 129743712 129743763 -29856020 + (CTG)n Simple_repeat Simple_repeat 1 51 0 4 1574 763 216 0 7 chr3 129744875 129745015 -29854768 + B3 SINE B2 1 139 -77 4 1574 318 261 45 0 chr3 129745011 129745099 -29854684 + PB1D10 SINE Alu 21 112 -5 4 1574 1970 280 86 66 chr3 129745100 129745777 -29854006 + Lx8 LINE L1 6062 6768 -705 4 1574 454 189 213 0 chr3 129745777 129745899 -29853884 - B1_Mur1 SINE Alu -1 148 1 4 1574 278 230 149 60 chr3 129745899 129746032 -29853751 - B1F2 SINE Alu -2 147 2 4 1574 1970 279 74 69 chr3 129746032 129746281 -29853502 + Lx8 LINE L1 6769 7012 -461 4 1574 427 227 89 144 chr3 129746284 129746464 -29853319 + B3 SINE B2 2 171 -45 4 1574 4469 8 0 0 chr3 129746620 129747102 -29852681 + LTRIS_Mm LTR ERV1 1 482 0 4 1574 35217 50 11 22 chr3 129747102 129750789 -29848994 + MuRRS-int LTR ERV1 1 3830 -860 4 1574 1692 31 0 0 chr3 129750789 129750981 -29848802 + B2_Mm1a SINE B2 2 193 0 4 1574 35217 49 11 23 chr3 129750981 129751881 -29847902 + MuRRS-int LTR ERV1 3831 4690 0 4 1574 4495 6 0 0 chr3 129751881 129752363 -29847420 + LTRIS_Mm LTR ERV1 1 482 0 4 1574 327 219 15 15 chr3 129752457 129752522 -29847261 + tRNA-Ala-GCY_ tRNA tRNA 3 67 -8 4 1574 1630 32 0 5 chr3 129752759 129752947 -29846836 + B2_Mm2 SINE B2 1 187 -8 4 1574 490 202 32 0 chr3 129753104 129753198 -29846585 + PB1D10 SINE Alu 21 117 0 4 1574 21 0 0 0 chr3 129753339 129753360 -29846423 + AT_rich Low_complexity Low_complexity 1 21 0 4 1574 997 211 50 0 chr3 129753363 129753562 -29846221 - B3 SINE B2 -6 210 2 4 1574 257 264 141 2 chr3 129753630 129753730 -29846053 - B1F1 SINE Alu -42 107 3 4 1574 413 70 0 0 chr3 129753750 129753807 -29845976 + (TTC)n Simple_repeat Simple_repeat 3 59 0 4 1574 621 90 0 0 chr3 129753807 129753896 -29845887 + (TC)n Simple_repeat Simple_repeat 2 90 0 4 1574 911 235 6 0 chr3 129754067 129754246 -29845537 + B3 SINE B2 36 215 -1 4 1574 283 250 18 0 chr3 129754489 129754545 -29845238 - ID4 SINE ID -25 58 2 4 1574 449 202 0 21 chr3 129755377 129755473 -29844310 + B1_Mur4 SINE Alu 50 143 -7 4 1574 522 296 26 7 chr3 129755680 129755833 -29843950 + RSINE1 SINE B4 2 157 -8 4 1574 727 236 154 25 chr3 129755932 129756189 -29843594 + MLT1D LTR MaLR 206 613 -11 4 1574 184 318 113 30 chr3 129756598 129756731 -29843052 + L2c LINE L2 3017 3160 -227 4 1574 261 246 61 15 chr3 129756774 129756840 -29842943 - MLT1D LTR MaLR -158 347 279 4 1574 257 304 98 60 chr3 129757028 129757161 -29842622 - MLT1D LTR MaLR -72 433 296 4 1574 709 172 0 2 chr3 129757304 129757431 -29842352 - B1_Mur2 SINE Alu -24 125 1 4 1574 404 226 105 70 chr3 129757492 129757635 -29842148 - B1F2 SINE Alu -1 148 1 4 1574 423 0 0 0 chr3 129758681 129758728 -29841055 + (CA)n Simple_repeat Simple_repeat 1 47 0 4 1574 181 227 0 43 chr3 129759138 129759184 -29840599 - L3 LINE CR1 -1969 2520 2477 4 1574 917 141 14 14 chr3 129759352 129759496 -29840287 + B1_Mur3 SINE Alu 1 144 -5 4 1574 286 229 39 52 chr3 129759735 129759828 -29839955 + PB1D10 SINE Alu 17 112 -8 4 1574 288 349 0 0 chr3 129759859 129759945 -29839838 - L2a LINE L2 -6 3420 3335 4 1574 794 244 10 91 chr3 129760156 129760354 -29839429 - B3 SINE B2 -22 194 13 4 1574 210 91 0 0 chr3 129760361 129760394 -29839389 - B3 SINE B2 -182 34 2 4 1574 269 254 301 19 chr3 129760440 129760649 -29839134 - MER21B LTR ERV1 -51 812 545 4 1574 295 228 49 25 chr3 129760734 129760815 -29838968 + PB1D10 SINE Alu 33 115 -2 4 1574 280 287 84 102 chr3 129760988 129761155 -29838628 - MER21B LTR ERV1 -659 204 41 4 1575 370 307 69 17 chr3 129762076 129762192 -29837591 + RSINE1 SINE B4 44 165 0 4 1575 22 35 0 0 chr3 129763268 129763297 -29836486 + GC_rich Low_complexity Low_complexity 1 29 0 4 1575 207 146 0 0 chr3 129763410 129763451 -29836332 + (CCCG)n Simple_repeat Simple_repeat 3 43 0 4 1575 2007 140 81 6 chr3 129765173 129765532 -29834251 + ORR1B1 LTR MaLR 1 386 -8 4 1575 386 176 10 68 chr3 129766049 129766147 -29833636 - PB1D10 SINE Alu 0 149 45 4 1575 778 191 129 16 chr3 129766202 129766388 -29833395 + RMER13A LTR ERVK 1 207 -653 4 1575 457 330 48 57 chr3 129766402 129766616 -29833167 + RMER13A LTR ERVK 679 887 -21 4 1575 3550 113 74 11 chr3 129766615 129767170 -29832613 - MT2B LTR ERVL -6 595 6 4 1575 306 172 108 15 chr3 129767749 129767814 -29831969 + B4 SINE B4 1 71 -221 4 1575 9189 176 88 45 chr3 129767814 129768798 -29830985 + L1_Mur3 LINE L1 326 1415 -4465 4 1575 360 64 0 0 chr3 129768798 129768845 -29830938 + (TG)n Simple_repeat Simple_repeat 2 48 0 5 1575 9189 151 30 42 chr3 129768845 129770467 -29829316 + L1_Mur3 LINE L1 1416 3009 -2871 4 1575 2664 185 34 72 chr3 129770477 129771000 -29828783 + L1_Mur3 LINE L1 4671 5182 -698 4 1575 1177 126 33 11 chr3 129771000 129771184 -29828599 - B2_Mm1t SINE B2 -4 189 2 5 1575 2664 185 34 72 chr3 129771184 129771308 -29828475 + L1_Mur3 LINE L1 5183 5293 -587 4 1575 2237 178 75 13 chr3 129771904 129772371 -29827412 + L1_Mur3 LINE L1 5229 5724 -156 5 1575 3621 186 27 133 chr3 129772362 129772917 -29826866 + Lx7 LINE L1 6829 7353 -343 5 1575 760 206 7 34 chr3 129772917 129773063 -29826720 - B1_Mur2 SINE Alu -6 143 2 5 1575 3621 186 27 133 chr3 129773063 129773474 -29826309 + Lx7 LINE L1 7354 7692 -4 5 1575 462 18 0 0 chr3 129773479 129773534 -29826249 + (GA)n Simple_repeat Simple_repeat 1 55 0 5 1575 587 271 38 25 chr3 129773534 129773687 -29826096 + B4 SINE B4 88 243 -49 5 1575 1992 103 6 52 chr3 129774150 129774497 -29825286 - BGLII_B LTR ERVK -3 438 108 5 1575 700 134 18 0 chr3 129774503 129774615 -29825168 + B2_Mm2 SINE B2 2 115 -80 5 1575 348 55 357 31 chr3 129774642 129774740 -29825043 + B2_Mm2 SINE B2 47 176 -19 5 1575 862 120 0 0 chr3 129774736 129774861 -29824922 - BGLII_A LTR ERVK -320 125 1 5 1575 270 0 0 0 chr3 129775143 129775173 -29824610 + (TC)n Simple_repeat Simple_repeat 2 31 0 5 1575 1168 68 0 0 chr3 129775186 129775332 -29824451 - B1_Mus2 SINE Alu 0 147 2 5 1575 502 211 109 0 chr3 129775844 129775972 -29823811 - B1_Mur1 SINE Alu -7 142 1 5 1575 188 284 26 51 chr3 129776002 129776080 -29823703 - MIR3 SINE MIR -36 172 97 5 1575 229 246 0 90 chr3 129776661 129776728 -29823055 - LTR81B LTR ERV1? -885 508 448 5 1575 244 269 0 0 chr3 129776743 129776795 -29822988 - MER5A1 DNA MER1_type -14 152 101 5 1575 376 259 34 51 chr3 129776830 129776948 -29822835 - PB1 SINE Alu 0 127 12 5 1575 300 70 0 0 chr3 129776987 129777030 -29822753 + (ATG)n Simple_repeat Simple_repeat 2 44 0 5 1575 476 228 94 0 chr3 129777040 129777167 -29822616 - B1F SINE Alu -10 139 1 5 1575 243 297 47 0 chr3 129777169 129777233 -29822550 - MER5A1 DNA MER1_type -92 74 8 5 1575 215 152 22 0 chr3 129777254 129777300 -29822483 + GA-rich Low_complexity Low_complexity 1 47 0 5 1575 291 244 67 34 chr3 129777374 129777463 -29822320 + RMER5 LTR ERV1 112 203 -331 5 1575 829 163 0 52 chr3 129777469 129777624 -29822159 + B1_Mus2 SINE Alu 1 147 0 5 1575 327 224 157 9 chr3 129777669 129777777 -29822006 + B3 SINE B2 1 124 -92 5 1575 405 177 25 0 chr3 129778057 129778136 -29821647 - B1F1 SINE Alu -2 147 67 5 1575 935 177 93 10 chr3 129778460 129778654 -29821129 + B3 SINE B2 2 211 -5 5 1575 218 156 0 0 chr3 129778730 129778762 -29821021 + (CCCGAA)n Simple_repeat Simple_repeat 1 32 0 5 1575 213 151 0 0 chr3 129778762 129778815 -29820968 + A-rich Low_complexity Low_complexity 43 95 0 5 1575 351 281 0 30 chr3 129779017 129779116 -29820667 + PB1D10 SINE Alu 1 96 -21 5 1575 563 257 106 27 chr3 129779135 129779323 -29820460 + B3 SINE B2 3 205 -11 5 1575 434 200 165 18 chr3 129779392 129779519 -29820264 - B3 SINE B2 -51 165 21 5 1575 255 307 0 26 chr3 129779655 129779732 -29820051 - B1F SINE Alu -74 75 1 5 1575 1069 43 63 28 chr3 129779743 129779886 -29819897 - B1_Mus1 SINE Alu 0 148 1 5 1575 308 169 65 0 chr3 129779923 129780000 -29819783 - L1MA5 LINE L1 -10 6290 6209 5 1575 331 180 0 0 chr3 129780009 129780070 -29819713 - L1MA5 LINE L1 -10 6290 6230 5 1575 27 73 0 0 chr3 129780862 129780917 -29818866 + AT_rich Low_complexity Low_complexity 1 55 0 5 1575 1449 73 10 5 chr3 129780992 129781185 -29818598 - B2_Mm2 SINE B2 0 195 2 5 1575 527 250 94 0 chr3 129781197 129781325 -29818458 - B1_Mur2 SINE Alu -9 140 1 5 1575 9624 91 27 10 chr3 129781349 129782850 -29816933 - Lx2 LINE L1 -16 6981 5459 5 1575 22 35 0 0 chr3 129783035 129783064 -29816719 + AT_rich Low_complexity Low_complexity 1 29 0 5 1575 1261 41 0 0 chr3 129783286 129783433 -29816350 + B1_Mus2 SINE Alu 1 147 0 5 1575 198 0 0 0 chr3 129783433 129783455 -29816328 + (A)n Simple_repeat Simple_repeat 1 22 0 5 1575 29 0 0 0 chr3 129784277 129784306 -29815477 + AT_rich Low_complexity Low_complexity 1 29 0 5 1575 623 332 96 17 chr3 129784435 129784843 -29814940 - Lx8 LINE L1 -54 7419 6980 5 1575 288 224 119 0 chr3 129784876 129784943 -29814840 - ID_B1 SINE B4 -30 194 120 5 1575 264 59 0 0 chr3 129785210 129785244 -29814539 + (CAAA)n Simple_repeat Simple_repeat 1 34 0 5 1575 540 212 58 17 chr3 129785426 129785546 -29814237 + B1F2 SINE Alu 11 135 -14 5 1575 578 253 17 69 chr3 129785948 129786122 -29813661 + RSINE1 SINE B4 1 165 0 5 1575 279 173 0 0 chr3 129786124 129786176 -29813607 + (CA)n Simple_repeat Simple_repeat 1 52 0 5 1575 607 272 44 0 chr3 129786650 129786830 -29812953 - B3A SINE B2 -6 192 5 5 1575 521 187 28 0 chr3 129786904 129787011 -29812772 - B1F SINE Alu -21 128 19 5 1575 285 146 0 0 chr3 129787107 129787155 -29812628 + (A)n Simple_repeat Simple_repeat 1 48 0 5 1575 642 184 0 0 chr3 129787494 129787619 -29812164 + CT-rich Low_complexity Low_complexity 3 127 0 5 1575 955 96 64 6 chr3 129787635 129787792 -29811991 - B2_Mm2 SINE B2 -28 167 2 5 1575 487 180 95 32 chr3 129787992 129788118 -29811665 + B1F SINE Alu 1 134 -15 5 1575 275 285 41 68 chr3 129788121 129788268 -29811515 + RMER15 LTR ERVL 18 160 -415 5 1575 254 358 0 0 chr3 129788362 129788471 -29811312 + RMER15 LTR ERVL 424 532 -43 5 1575 392 232 0 0 chr3 129788854 129788947 -29810836 - ID2 SINE ID -54 98 6 5 1575 245 29 29 0 chr3 129788999 129789033 -29810750 + (TTTTC)n Simple_repeat Simple_repeat 5 39 0 5 1575 1429 88 16 0 chr3 129789034 129789226 -29810557 - B2_Mm2 SINE B2 0 195 1 5 1575 243 204 0 0 chr3 129789246 129789300 -29810483 + CT-rich Low_complexity Low_complexity 1 54 0 5 1575 306 125 0 0 chr3 129790056 129790104 -29809679 + (TTCTCC)n Simple_repeat Simple_repeat 5 52 0 5 1575 221 308 0 0 chr3 129792023 129792088 -29807695 - ID4 SINE ID -10 73 9 5 1575 273 167 0 0 chr3 129792173 129792227 -29807556 + (TA)n Simple_repeat Simple_repeat 2 55 0 5 1575 581 283 155 0 chr3 129792276 129792463 -29807320 - ID_B1 SINE B4 -4 220 5 5 1575 553 259 23 0 chr3 129792667 129792798 -29806985 - L1MA4 LINE L1 -365 5935 5802 5 1575 826 124 8 23 chr3 129793996 129794128 -29805655 - B1_Mur3 SINE Alu -18 131 2 5 1575 638 193 41 0 chr3 129794783 129794928 -29804855 + ORR1E LTR MaLR 1 151 -208 5 1575 3809 255 73 64 chr3 129794950 129796153 -29803630 - Lx8 LINE L1 -2 7471 6236 5 1575 2587 55 3 61 chr3 129796153 129796499 -29803284 - ORR1A2 LTR MaLR -1 326 1 5 1575 3809 255 73 64 chr3 129796499 129796615 -29803168 - Lx8 LINE L1 -1238 6235 6140 5 1575 475 315 32 37 chr3 129796615 129796803 -29802980 + ORR1E LTR MaLR 171 357 -2 5 1575 1333 115 16 5 chr3 129796811 129797003 -29802780 - B2_Mm2 SINE B2 0 195 2 5 1575 718 267 0 0 chr3 129797746 129797907 -29801876 - RSINE1 SINE B4 -3 162 2 5 1575 468 269 62 0 chr3 129798020 129798150 -29801633 + B1F SINE Alu 1 138 -11 5 1575 486 0 0 0 chr3 129798151 129798205 -29801578 + (CAAAC)n Simple_repeat Simple_repeat 5 58 0 5 1575 2285 120 20 6 chr3 129798346 129798699 -29801084 - Lx LINE L1 0 6654 6297 5 1575 2160 133 3 3 chr3 129798854 129799200 -29800583 + ORR1A1 LTR MaLR 1 346 0 5 1575 576 293 0 0 chr3 129799326 129799459 -29800324 + B1F SINE Alu 5 137 -12 5 1575 207 0 0 0 chr3 129799726 129799749 -29800034 + (TG)n Simple_repeat Simple_repeat 1 23 0 5 1575 7861 60 17 0 chr3 129800347 129801523 -29798260 - L1_Mus1 LINE L1 0 6567 5372 5 1575 2560 110 25 8 chr3 129801522 129801554 -29798229 + L1_Mur2 LINE L1 3440 3471 -2406 5 1575 225 0 0 0 chr3 129801554 129801579 -29798204 + (CAAA)n Simple_repeat Simple_repeat 3 27 0 5 1575 2560 110 25 8 chr3 129801579 129801940 -29797843 + L1_Mur2 LINE L1 3472 3838 -2039 5 1575 360 0 0 0 chr3 129801973 129802013 -29797770 + (TG)n Simple_repeat Simple_repeat 1 40 0 5 1575 315 0 0 0 chr3 129802013 129802047 -29797736 + (GA)n Simple_repeat Simple_repeat 1 35 0 5 1575 691 287 162 8 chr3 129802057 129802310 -29797473 - B4 SINE B4 0 292 1 5 1575 279 0 0 0 chr3 129802319 129802350 -29797433 + (TTTTA)n Simple_repeat Simple_repeat 2 32 0 5 1575 1377 75 32 0 chr3 129802861 129803048 -29796735 + B2_Mm1a SINE B2 1 193 0 5 1575 450 0 0 0 chr3 129803296 129803346 -29796437 + (TG)n Simple_repeat Simple_repeat 2 51 0 5 1575 243 0 0 0 chr3 129803455 129803482 -29796301 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 5 1575 4409 35 0 0 chr3 129803655 129804163 -29795620 - L1Md_T LINE L1 0 6582 6075 5 1575 1524 229 80 9 chr3 129804287 129804301 -29795482 - Lx7 LINE L1 -350 7346 7331 5 1575 234 0 0 0 chr3 129804301 129804327 -29795456 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 5 1575 1524 229 80 9 chr3 129804327 129804735 -29795048 - Lx7 LINE L1 -366 7330 6894 5 1575 931 216 10 25 chr3 129805258 129805462 -29794321 + B3 SINE B2 3 203 -13 5 1575 25 0 0 0 chr3 129805469 129805494 -29794289 + AT_rich Low_complexity Low_complexity 1 25 0 5 1575 312 70 0 0 chr3 129806210 129806253 -29793530 + (TG)n Simple_repeat Simple_repeat 1 43 0 5 1575 321 311 0 36 chr3 129806275 129806385 -29793398 - B3A SINE B2 -90 108 3 5 1575 234 0 0 0 chr3 129806490 129806516 -29793267 + (CAA)n Simple_repeat Simple_repeat 2 27 0 5 1575 500 221 66 13 chr3 129806532 129806683 -29793100 - B3 SINE B2 -11 205 47 5 1575 245 278 111 0 chr3 129806695 129806803 -29792980 - PB1D7 SINE Alu 0 120 1 5 1575 180 0 0 0 chr3 129806803 129806823 -29792960 + (TC)n Simple_repeat Simple_repeat 1 20 0 5 1575 713 238 37 11 chr3 129807102 129807293 -29792490 + B3A SINE B2 2 197 -1 5 1575 299 185 62 42 chr3 129807386 129807482 -29792301 - HAL1 LINE L1 -1803 704 607 5 1575 257 143 0 39 chr3 129807794 129807845 -29791938 - HAL1 LINE L1 -2337 170 122 5 1575 503 235 8 17 chr3 129807975 129808092 -29791691 - PB1D10 SINE Alu -1 116 1 6 1575 247 284 0 0 chr3 129808112 129808179 -29791604 - tRNA-Leu-CTG tRNA tRNA -15 71 5 6 1575 662 291 102 32 chr3 129808770 129809054 -29790729 - MTD LTR MaLR -13 406 103 6 1575 558 43 0 0 chr3 129809087 129809156 -29790627 + (TCTA)n Simple_repeat Simple_repeat 4 72 0 6 1575 1165 77 0 0 chr3 129809160 129809316 -29790467 - B2_Mm2 SINE B2 -39 156 1 6 1575 423 0 0 0 chr3 129809458 129809505 -29790278 + (CA)n Simple_repeat Simple_repeat 2 48 0 6 1575 867 204 0 34 chr3 129809543 129809721 -29790062 + B3 SINE B2 45 216 0 6 1575 425 291 18 0 chr3 129809761 129809871 -29789912 - ID_B1 SINE B4 -8 216 105 6 1575 753 299 28 14 chr3 129809880 129810168 -29789615 + L1MA5A LINE L1 4603 4894 -1249 6 1575 503 298 102 45 chr3 129810168 129810344 -29789439 + B3A SINE B2 1 186 -30 6 1575 1753 225 17 31 chr3 129810345 129810767 -29789016 - MTD LTR MaLR 0 419 4 6 1575 807 257 90 64 chr3 129810852 129811276 -29788507 + L1MA5A LINE L1 4899 5333 -810 6 1575 1048 246 53 48 chr3 129811371 129811819 -29787964 + L1MA5A LINE L1 5554 5998 -302 6 1575 522 181 88 29 chr3 129811899 129812036 -29787747 + B1_Mur4 SINE Alu 6 150 0 6 1575 38 0 0 0 chr3 129812130 129812168 -29787615 + AT_rich Low_complexity Low_complexity 1 38 0 6 1575 732 216 57 25 chr3 129812206 129812363 -29787420 - RSINE1 SINE B4 0 165 4 6 1575 333 291 67 67 chr3 129812502 129812697 -29787086 - ORR1E LTR MaLR -162 197 3 6 1575 390 231 142 76 chr3 129812737 129812962 -29786821 + L1MA5A LINE L1 6061 6300 0 6 1575 1028 191 39 0 chr3 129812966 129813170 -29786613 + B3 SINE B2 1 212 -4 6 1575 380 250 6 106 chr3 129813173 129813343 -29786440 + L1M4 LINE L1 5188 5340 -806 6 1575 1503 156 47 14 chr3 129813537 129813816 -29785967 - Lx3A LINE L1 0 6981 6694 6 1575 945 244 30 0 chr3 129814053 129814250 -29785533 + B3 SINE B2 2 204 -12 6 1575 291 341 29 7 chr3 129814344 129814483 -29785300 + L1ME3 LINE L1 6010 6151 -11 6 1575 215 188 0 20 chr3 129814513 129814562 -29785221 + RSINE1 SINE B4 3 50 -115 6 1575 1121 236 52 34 chr3 129814618 129814943 -29784840 - Lx9 LINE L1 -435 7209 6879 6 1575 596 87 0 11 chr3 129814947 129815040 -29784743 + (TTCC)n Simple_repeat Simple_repeat 3 94 0 6 1575 713 149 100 43 chr3 129815044 129815184 -29784599 - B1_Mus1 SINE Alu 0 148 1 6 1575 22 88 0 0 chr3 129815560 129815617 -29784166 + AT_rich Low_complexity Low_complexity 1 57 0 6 1575 399 202 0 0 chr3 129815620 129815739 -29784044 + (TG)n Simple_repeat Simple_repeat 1 119 0 6 1575 413 239 149 0 chr3 129815743 129815877 -29783906 - RSINE1 SINE B4 0 165 12 6 1575 261 190 0 0 chr3 129815900 129815912 -29783871 + polypyrimidine Low_complexity Low_complexity 48 59 0 6 1575 1105 106 0 16 chr3 129815912 129816094 -29783689 + (TCC)n Simple_repeat Simple_repeat 2 180 0 6 1575 261 223 0 0 chr3 129816094 129816189 -29783594 + CT-rich Low_complexity Low_complexity 1 95 0 6 1575 1488 283 37 88 chr3 129816254 129817016 -29782767 + L1MA5 LINE L1 5532 6254 -46 6 1575 1324 58 0 0 chr3 129817232 129817403 -29782380 - L1Md_A LINE L1 0 6582 6412 6 1575 12382 21 0 0 chr3 129817403 129819344 -29780439 + L1Md_T LINE L1 4487 6427 -155 6 1575 338 292 144 23 chr3 129819421 129819677 -29780106 - Lx8 LINE L1 -50 7423 7137 6 1575 180 77 0 0 chr3 129819692 129819718 -29780065 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 6 1575 763 272 20 0 chr3 129819721 129819923 -29779860 - B3 SINE B2 -9 207 2 6 1575 442 320 38 59 chr3 129820929 129821115 -29778668 - B3A SINE B2 -2 196 15 6 1575 428 282 142 14 chr3 129821126 129821345 -29778438 - L1MB2 LINE L1 -116 6055 5809 6 1575 291 54 0 0 chr3 129821403 129821440 -29778343 + (TC)n Simple_repeat Simple_repeat 2 38 0 6 1575 340 324 0 0 chr3 129821540 129821642 -29778141 - MIR SINE MIR -70 192 91 6 1575 342 45 0 0 chr3 129821733 129821777 -29778006 + (CAT)n Simple_repeat Simple_repeat 1 44 0 6 1575 306 0 0 0 chr3 129821914 129821948 -29777835 + (T)n Simple_repeat Simple_repeat 1 34 0 6 1575 575 280 19 0 chr3 129822160 129822317 -29777466 + B3A SINE B2 1 160 -38 6 1575 288 0 0 0 chr3 129822318 129822350 -29777433 + (CA)n Simple_repeat Simple_repeat 2 33 0 6 1575 306 349 74 17 chr3 129823332 129823507 -29776276 - MTE-int LTR MaLR -362 1218 1034 6 1575 450 0 0 0 chr3 129823525 129823575 -29776208 + (CA)n Simple_repeat Simple_repeat 2 51 0 6 1575 274 324 92 49 chr3 129823578 129823905 -29775878 - MLT2B3 LTR ERVL -75 642 259 6 1575 283 213 16 0 chr3 129823905 129823966 -29775817 - MTEa LTR MaLR -220 159 98 6 1575 274 324 92 49 chr3 129823966 129824085 -29775698 - MLT2B3 LTR ERVL -75 258 117 6 1575 629 270 203 18 chr3 129824085 129824613 -29775170 - L1M2 LINE L1 -852 5445 4805 6 1575 284 306 10 0 chr3 129824728 129824826 -29774957 - L1MC4 LINE L1 -146 7896 7798 6 1575 236 241 143 44 chr3 129824949 129825040 -29774743 - L1MC4 LINE L1 -421 7621 7522 6 1575 678 216 0 0 chr3 129825121 129825297 -29774486 + (TG)n Simple_repeat Simple_repeat 1 176 0 6 1575 679 249 90 83 chr3 129825297 129825586 -29774197 - B4A SINE B4 0 292 2 6 1575 243 0 0 0 chr3 129825849 129825876 -29773907 + (A)n Simple_repeat Simple_repeat 1 27 0 6 1575 365 58 19 0 chr3 129826143 129826195 -29773588 + (TG)n Simple_repeat Simple_repeat 1 53 0 6 1575 859 309 9 22 chr3 129826201 129826423 -29773360 - B4A SINE B4 -14 278 60 6 1575 2337 212 89 0 chr3 129826424 129826977 -29772806 + Lx9 LINE L1 7035 7636 -8 6 1575 587 207 266 23 chr3 129827000 129827173 -29772610 + B3 SINE B2 2 216 0 6 1575 1113 145 0 0 chr3 129827272 129827695 -29772088 + (CA)n Simple_repeat Simple_repeat 1 423 0 6 1575 352 218 25 13 chr3 129827695 129827774 -29772009 - B4 SINE B4 -212 80 1 6 1575 340 324 0 26 chr3 129827774 129827888 -29771895 - PB1D10 SINE Alu -3 114 4 6 1575 198 0 0 0 chr3 129828194 129828216 -29771567 + (TG)n Simple_repeat Simple_repeat 2 23 0 6 1575 607 239 7 7 chr3 129828216 129828355 -29771428 - RSINE1 SINE B4 -25 140 2 6 1575 930 215 123 11 chr3 129828866 129829143 -29770640 + RMER13B LTR ERVK 525 832 -76 6 1575 1135 88 0 0 chr3 129829143 129829290 -29770493 - B1_Mus1 SINE Alu 0 148 2 6 1575 355 195 0 61 chr3 129829317 129829399 -29770384 - B1_Mur4 SINE Alu -56 94 18 6 1575 346 257 35 95 chr3 129830137 129830253 -29769530 + PB1D10 SINE Alu 1 109 -40 6 1575 444 82 0 0 chr3 129830360 129830421 -29769362 + (CA)n Simple_repeat Simple_repeat 2 62 0 6 1575 303 320 95 58 chr3 129832261 129832503 -29767280 + B4A SINE B4 1 251 -41 6 1575 378 0 0 0 chr3 129832515 129832557 -29767226 + (CA)n Simple_repeat Simple_repeat 2 43 0 6 1575 290 284 172 39 chr3 129832622 129832750 -29767033 - ID_B1 SINE B4 -66 158 14 6 1575 738 239 6 6 chr3 129833267 129833423 -29766360 - B3 SINE B2 -56 160 5 6 1575 438 292 95 0 chr3 129833560 129833697 -29766086 - MER63B DNA AcHobo -11 425 276 6 1575 202 279 122 25 chr3 129834059 129834223 -29765560 - MIRc SINE MIR -25 243 57 6 1575 202 245 161 93 chr3 129835722 129835884 -29763899 + L3 LINE CR1 3491 3663 -826 6 1575 312 332 144 49 chr3 129836050 129836521 -29763262 + L2 LINE L2 1212 1727 -1692 6 1575 271 266 147 38 chr3 129836759 129836997 -29762786 - L1MEc LINE L1 -6100 300 37 6 1575 351 0 0 0 chr3 129837172 129837211 -29762572 + (TTAA)n Simple_repeat Simple_repeat 4 42 0 6 1575 283 351 43 30 chr3 129837258 129837493 -29762290 - Lx8 LINE L1 -2 7471 7234 6 1575 34 24 0 0 chr3 129837593 129837634 -29762149 + AT_rich Low_complexity Low_complexity 1 41 0 6 1575 481 122 98 0 chr3 129837634 129837716 -29762067 - B1_Mur3 SINE Alu -20 129 40 6 1575 457 231 0 27 chr3 129837738 129837849 -29761934 + PB1D9 SINE Alu 13 120 0 6 1575 281 340 49 15 chr3 129837868 129838071 -29761712 + L2 LINE L2 2635 2844 -575 6 1575 28 0 0 0 chr3 129838524 129838552 -29761231 + AT_rich Low_complexity Low_complexity 1 28 0 6 1575 464 264 0 0 chr3 129838555 129838665 -29761118 - B1F1 SINE Alu 0 149 40 6 1575 191 333 110 45 chr3 129838672 129838826 -29760957 - MIR SINE MIR -54 208 45 6 1575 638 258 57 21 chr3 129839141 129839335 -29760448 - RMER30 DNA MER1_type 0 202 2 6 1575 817 253 47 0 chr3 129839694 129839884 -29759899 - ID_B1 SINE B4 -25 199 1 6 1575 360 190 0 0 chr3 129840857 129840936 -29758847 + CT-rich Low_complexity Low_complexity 3 81 0 6 1575 233 273 117 74 chr3 129840936 129840971 -29758812 - B4A SINE B4 -46 246 116 6 1575 442 259 8 59 chr3 129840971 129841090 -29758693 - PB1D10 SINE Alu -4 113 1 6 1575 239 393 16 24 chr3 129841098 129841223 -29758560 + Charlie10a DNA MER1_type 127 250 -30 6 1575 204 40 0 0 chr3 129841499 129841524 -29758259 + (TCC)n Simple_repeat Simple_repeat 1 25 0 6 1575 1122 316 64 7 chr3 129841943 129842351 -29757432 - Lx8 LINE L1 -606 6867 6437 6 1575 722 224 7 0 chr3 129842373 129842520 -29757263 - B1_Mur3 SINE Alu 0 149 2 6 1575 9197 2 0 0 chr3 129843732 129844779 -29755004 - L1Md_A LINE L1 0 6582 5536 6 1575 378 0 0 0 chr3 129845025 129845067 -29754716 + (GA)n Simple_repeat Simple_repeat 1 42 0 6 1575 2433 98 0 15 chr3 129845250 129845582 -29754201 - ORR1A2 LTR MaLR 0 327 1 6 1575 234 0 0 0 chr3 129845633 129845659 -29754124 + (T)n Simple_repeat Simple_repeat 1 26 0 6 1575 441 127 0 0 chr3 129845719 129845798 -29753985 + (TC)n Simple_repeat Simple_repeat 2 80 0 6 1575 1013 182 81 0 chr3 129845820 129846018 -29753765 - B3 SINE B2 0 216 3 6 1575 360 111 0 0 chr3 129846141 129846195 -29753588 + (TG)n Simple_repeat Simple_repeat 2 55 0 6 1575 520 220 21 28 chr3 129846549 129846694 -29753089 + RLTR23 LTR ERV1 287 430 0 6 1575 780 205 51 26 chr3 129846737 129846932 -29752851 - L1MA4 LINE L1 -382 5918 5719 7 1575 183 42 0 0 chr3 129846979 129847003 -29752780 + (C)n Simple_repeat Simple_repeat 1 24 0 7 1575 283 180 121 77 chr3 129847010 129847133 -29752650 - MTEb LTR MaLR -24 355 240 7 1575 334 345 45 49 chr3 129847668 129847933 -29751850 - RMER15 LTR ERVL -13 562 299 7 1575 342 0 0 0 chr3 129850288 129850326 -29749457 + (CA)n Simple_repeat Simple_repeat 2 39 0 7 1575 719 220 35 29 chr3 129850383 129850556 -29749227 + B3A SINE B2 4 177 -21 7 1575 219 175 17 34 chr3 129850596 129850655 -29749128 + A-rich Low_complexity Low_complexity 4 61 0 7 1575 396 138 0 0 chr3 129851354 129851419 -29748364 + (CGTG)n Simple_repeat Simple_repeat 1 65 0 7 1575 583 262 60 0 chr3 129851717 129851900 -29747883 + RCHARR1 DNA MER1_type 106 299 -675 7 1575 694 235 47 26 chr3 129851966 129852158 -29747625 + B3 SINE B2 16 211 -5 7 1575 213 39 0 0 chr3 129852164 129852190 -29747593 + (CAA)n Simple_repeat Simple_repeat 2 27 0 7 1575 225 155 0 0 chr3 129852298 129852356 -29747427 + A-rich Low_complexity Low_complexity 4 61 0 7 1575 195 42 0 0 chr3 129852501 129852525 -29747258 + (A)n Simple_repeat Simple_repeat 1 24 0 7 1575 3620 130 80 33 chr3 129852709 129853344 -29746439 - Lx LINE L1 0 6654 5990 7 1575 1618 161 72 33 chr3 129853936 129854295 -29745488 - RLTR12A LTR ERVK -8 560 188 7 1575 567 221 177 76 chr3 129854351 129854679 -29745104 - L1_Rod LINE L1 -2884 2963 2603 7 1575 975 182 65 5 chr3 129854812 129855011 -29744772 + B3 SINE B2 1 211 -5 7 1575 1617 167 109 35 chr3 129855095 129855442 -29744341 - MTC LTR MaLR -2 419 47 7 1575 488 122 12 0 chr3 129855994 129856076 -29743707 + (AGGGGG)n Simple_repeat Simple_repeat 4 86 0 7 1575 228 246 35 0 chr3 129856555 129856612 -29743171 - MLT2B2 LTR ERVL -7 552 494 7 1575 743 273 31 14 chr3 129856725 129856948 -29742835 - Tigger5 DNA MER2_type -2179 227 1 7 1575 552 232 16 23 chr3 129856955 129857083 -29742700 + B1_Mur4 SINE Alu 16 142 -8 7 1575 324 120 0 0 chr3 129857086 129857136 -29742647 + (GGAA)n Simple_repeat Simple_repeat 3 52 0 7 1575 923 259 87 80 chr3 129857156 129857571 -29742212 - MLT2B2 LTR ERVL -72 443 26 7 1575 785 254 199 39 chr3 129857585 129857946 -29741837 - MTD LTR MaLR 0 419 1 7 1575 402 321 9 0 chr3 129857976 129858088 -29741695 - MER81 DNA AcHobo 0 114 2 7 1575 389 242 81 0 chr3 129858445 129858544 -29741239 + RSINE1 SINE B4 18 124 -41 7 1575 459 0 0 0 chr3 129858544 129858595 -29741188 + (CA)n Simple_repeat Simple_repeat 2 52 0 7 1575 217 247 10 10 chr3 129858642 129858740 -29741043 + GA-rich Low_complexity Low_complexity 3 100 0 7 1575 1005 124 0 0 chr3 129858756 129858917 -29740866 + (GGA)n Simple_repeat Simple_repeat 2 162 0 7 1575 292 273 79 20 chr3 129859273 129859374 -29740409 + PB1D10 SINE Alu 9 115 -2 7 1575 297 51 0 0 chr3 129859393 129859432 -29740351 + (TGG)n Simple_repeat Simple_repeat 1 39 0 7 1575 3552 13 5 0 chr3 129859500 129859894 -29739889 + MTA_Mm LTR MaLR 1 396 0 7 1575 279 198 41 62 chr3 129860048 129860145 -29739638 - ORR1E LTR MaLR -235 124 30 7 1575 414 57 0 0 chr3 129861158 129861211 -29738572 + (TC)n Simple_repeat Simple_repeat 2 54 0 7 1575 985 129 12 0 chr3 129861215 129861386 -29738397 + (GGGAGA)n Simple_repeat Simple_repeat 3 175 0 7 1575 335 23 0 22 chr3 129861574 129861619 -29738164 + (TTA)n Simple_repeat Simple_repeat 2 45 0 7 1575 289 243 74 9 chr3 129861622 129861730 -29738053 - MIR SINE MIR -127 135 21 7 1575 203 138 0 0 chr3 129863544 129863573 -29736210 + (TCCC)n Simple_repeat Simple_repeat 4 32 0 7 1575 692 172 85 15 chr3 129863574 129863704 -29736079 - B1_Mur2 SINE Alu -7 142 4 7 1575 210 246 0 0 chr3 129865076 129865137 -29734646 + (CATA)n Simple_repeat Simple_repeat 4 64 0 7 1575 1049 105 0 6 chr3 129865817 129865980 -29733803 + (GAA)n Simple_repeat Simple_repeat 1 162 0 7 1575 342 183 17 111 chr3 129866912 129867029 -29732754 + MLT1A1 LTR MaLR 301 406 -2 7 1575 1174 127 5 41 chr3 129867619 129867840 -29731943 - Lx LINE L1 -49 6605 6393 7 1575 372 234 43 16 chr3 129868603 129868720 -29731063 - MLT1A LTR MaLR -240 125 1 7 1575 206 371 0 10 chr3 129868724 129868822 -29730961 - MIRb SINE MIR -1 267 171 7 1575 479 266 9 9 chr3 129868888 129868998 -29730785 - PB1D10 SINE Alu -5 112 3 7 1575 543 305 64 52 chr3 129869894 129870143 -29729640 - MER102c DNA MER1_type -79 252 1 7 1575 437 229 27 9 chr3 129870262 129870372 -29729411 - PB1D9 SINE Alu -1 119 8 7 1575 255 225 32 53 chr3 129870289 129870383 -29729400 - ID_B1 SINE B4 -54 170 79 7 1575 244 392 71 43 chr3 129871108 129871292 -29728491 + MER115 DNA Tip100 111 299 -394 7 1575 425 34 17 0 chr3 129871313 129871372 -29728411 + (TG)n Simple_repeat Simple_repeat 2 61 0 7 1575 1418 268 79 32 chr3 129872192 129872759 -29727024 - L1MB5 LINE L1 -2 6172 5579 7 1575 900 283 113 33 chr3 129872866 129873326 -29726457 - L1MB7 LINE L1 -56 6128 5632 7 1575 1418 128 15 25 chr3 129873337 129873622 -29726161 + RMER6C LTR ERVK 1 359 -331 7 1575 1263 100 5 0 chr3 129873671 129873861 -29725922 + RMER6C LTR ERVK 500 690 0 7 1575 404 281 35 14 chr3 129873877 129874018 -29725765 + MLT1A0 LTR MaLR 61 204 -161 7 1575 1035 257 0 0 chr3 129874264 129874470 -29725313 - B3 SINE B2 -10 206 1 7 1575 607 337 20 20 chr3 129874522 129874725 -29725058 - B3 SINE B2 -13 203 1 7 1575 1001 227 74 50 chr3 129874735 129875115 -29724668 - L1MB7 LINE L1 -847 5299 4911 7 1575 614 317 123 43 chr3 129875938 129876413 -29723370 - MLT1F-int LTR MaLR -358 1131 506 7 1575 347 270 100 1 chr3 129876488 129876598 -29723185 - PB1 SINE Alu -2 125 1 7 1575 342 0 0 0 chr3 129876617 129876655 -29723128 + (TG)n Simple_repeat Simple_repeat 2 39 0 7 1575 340 207 163 57 chr3 129876655 129876778 -29723005 - B1_Mur4 SINE Alu -10 140 5 7 1575 399 41 0 0 chr3 129876792 129876841 -29722942 + (TTTTA)n Simple_repeat Simple_repeat 2 50 0 7 1575 1065 53 15 0 chr3 129876841 129876972 -29722811 - B1_Mus1 SINE Alu -12 136 4 7 1575 879 264 156 21 chr3 129877439 129877772 -29722011 + MTD LTR MaLR 42 419 0 7 1575 492 313 63 67 chr3 129877871 129878347 -29721436 - L1M5 LINE L1 -743 5403 4930 7 1575 344 316 26 0 chr3 129878792 129878909 -29720874 + L1ME3 LINE L1 5848 5967 -195 7 1575 461 265 87 37 chr3 129879157 129879318 -29720465 - MIR SINE MIR -33 229 61 7 1575 419 251 80 3 chr3 129880877 129881043 -29718740 - MLT1D LTR MaLR -15 612 305 7 1575 414 0 0 0 chr3 129881248 129881294 -29718489 + (TG)n Simple_repeat Simple_repeat 2 47 0 7 1575 351 0 0 0 chr3 129882399 129882438 -29717345 + (CA)n Simple_repeat Simple_repeat 2 40 0 7 1575 343 269 84 66 chr3 129882447 129882690 -29717093 - Lx8 LINE L1 -195 7449 7054 7 1575 189 0 0 0 chr3 129885270 129885291 -29714492 + (TTTA)n Simple_repeat Simple_repeat 1 21 0 7 1575 421 323 47 0 chr3 129887080 129887207 -29712576 - RSINE1 SINE B4 -13 152 20 7 1575 356 250 0 43 chr3 129887364 129887456 -29712327 + PB1D10 SINE Alu 22 109 -8 7 1575 313 265 0 3 chr3 129887490 129887574 -29712209 + ID4 SINE ID 10 92 -60 7 1575 261 0 0 0 chr3 129888111 129888140 -29711643 + (T)n Simple_repeat Simple_repeat 1 29 0 7 1575 423 302 164 18 chr3 129888377 129888596 -29711187 + LFSINE_Vert SINE SINE 6 256 -203 7 1575 188 328 16 56 chr3 129889059 129889185 -29710598 + MIRb SINE MIR 27 147 -121 7 1575 216 200 0 0 chr3 129890876 129890921 -29708862 + G-rich Low_complexity Low_complexity 3 47 0 7 1575 261 0 0 0 chr3 129891945 129891974 -29707809 + (TC)n Simple_repeat Simple_repeat 2 30 0 7 196 4761 80 28 0 chr3 129891976 129892580 -29707203 - L1_Mus3 LINE L1 -5 6633 6013 7 1576 504 304 143 25 chr3 129892657 129892853 -29706930 - ID_B1 SINE B4 -5 219 1 7 1576 615 319 0 47 chr3 129893470 129893661 -29706122 - B3A SINE B2 -16 182 1 7 1576 879 207 201 0 chr3 129893907 129894086 -29705697 + B3 SINE B2 1 215 -1 7 1576 207 227 0 0 chr3 129895594 129895660 -29704123 + G-rich Low_complexity Low_complexity 2 67 0 7 1576 807 242 18 0 chr3 129895663 129895828 -29703955 - B3A SINE B2 -30 168 1 7 1576 631 320 89 47 chr3 129895971 129896374 -29703409 - LTR37A LTR ERV1 -6 420 1 7 1576 1056 163 114 25 chr3 129897486 129897687 -29702096 - URR1A DNA MER1_type 0 226 8 7 1576 754 215 35 0 chr3 129898970 129899114 -29700669 - B1_Mur3 SINE Alu 0 149 1 7 1576 279 305 0 128 chr3 129899418 129899512 -29700271 + RSINE1 SINE B4 84 165 0 7 1576 296 353 32 6 chr3 129900761 129900918 -29698865 + MLT1A1 LTR MaLR 1 161 -247 7 1576 264 30 0 0 chr3 129901682 129901715 -29698068 + (CAAAC)n Simple_repeat Simple_repeat 1 33 0 7 1576 1189 68 0 0 chr3 129901768 129901914 -29697869 - L1_Mus1 LINE L1 -375 6192 6047 7 1576 1050 51 36 21 chr3 129901914 129902054 -29697729 + L1_Mus1 LINE L1 6426 6567 0 7 1576 538 217 40 92 chr3 129902333 129902485 -29697298 + B4 SINE B4 81 224 -68 7 1576 1093 58 0 0 chr3 129902349 129902487 -29697296 + B1_Mus1 SINE Alu 11 148 0 7 1576 195 274 39 0 chr3 129902873 129902924 -29696859 + L3 LINE CR1 4009 4061 -428 7 1576 252 176 0 0 chr3 129903012 129903042 -29696741 + (CAG)n Simple_repeat Simple_repeat 3 32 0 7 1576 270 0 0 0 chr3 129903042 129903072 -29696711 + (GGA)n Simple_repeat Simple_repeat 2 31 0 7 1576 252 176 0 0 chr3 129903072 129903092 -29696691 + (CAG)n Simple_repeat Simple_repeat 3 22 0 7 1576 324 0 0 0 chr3 129904228 129904264 -29695519 + (T)n Simple_repeat Simple_repeat 1 36 0 8 1576 23 0 0 0 chr3 129904449 129904472 -29695311 + AT_rich Low_complexity Low_complexity 1 23 0 8 1576 338 286 76 104 chr3 129905042 129905106 -29694677 - L1MA6 LINE L1 -123 6177 6113 8 1576 1246 54 0 0 chr3 129905106 129905253 -29694530 + B1_Mus1 SINE Alu 2 148 0 8 1576 338 286 76 104 chr3 129905253 129905399 -29694384 - L1MA6 LINE L1 -188 6112 5973 8 1576 459 35 0 0 chr3 129905422 129905479 -29694304 + (TCTA)n Simple_repeat Simple_repeat 3 59 0 8 1576 2404 174 45 3 chr3 129905479 129905919 -29693864 - Lx5 LINE L1 -22 7028 6590 8 1576 224 317 133 7 chr3 129907594 129907737 -29692046 + L2c LINE L2 2975 3135 -252 8 1576 613 275 7 7 chr3 129908152 129908291 -29691492 - ID_B1 SINE B4 -6 218 80 8 1576 1055 0 0 0 chr3 129908382 129908489 -29691294 + U6 snRNA snRNA 1 107 0 8 1576 31894 4 0 0 chr3 129908489 129912010 -29687773 + L1Md_A LINE L1 2066 5586 -297 8 1576 9617 3 0 0 chr3 129912010 129913006 -29686777 + L1Md_A LINE L1 5587 6582 0 8 1576 520 62 308 34 chr3 129913580 129913697 -29686086 - B2_Mm2 SINE B2 0 195 47 8 1576 1301 103 11 0 chr3 129913763 129913938 -29685845 - B2_Mm1t SINE B2 -16 177 1 8 1576 300 218 52 112 chr3 129914143 129914277 -29685506 - Lx7 LINE L1 -776 6920 6795 8 1576 1011 206 75 5 chr3 129915548 129915748 -29684035 - B3 SINE B2 0 216 3 8 1576 289 347 0 76 chr3 129915825 129915956 -29683827 - PB1 SINE Alu -6 121 1 8 1576 543 328 23 8 chr3 129915985 129916193 -29683590 - B3A SINE B2 -6 210 1 8 1576 257 296 42 0 chr3 129916682 129916753 -29683030 + BC1_Mm scRNA scRNA 15 88 -64 8 1576 449 110 0 14 chr3 129916859 129916933 -29682850 + (TCCC)n Simple_repeat Simple_repeat 4 76 0 8 1576 714 159 51 43 chr3 129916936 129917074 -29682709 - B1_Mur2 SINE Alu -6 143 5 8 1576 199 270 66 26 chr3 129918336 129918412 -29681371 + L2 LINE L2 2746 2824 -595 8 1576 362 164 15 0 chr3 129918518 129918585 -29681198 - MTE2a LTR MaLR 0 379 312 8 1576 256 241 0 0 chr3 129920136 129920194 -29679589 + B4 SINE B4 7 64 -228 8 1576 689 285 21 75 chr3 129920247 129920486 -29679297 + B4 SINE B4 67 292 0 8 1576 200 278 42 0 chr3 129921051 129921123 -29678660 - MIR SINE MIR -92 170 96 8 1576 495 195 14 77 chr3 129921623 129921780 -29678003 - PB1D7 SINE Alu -1 148 5 8 1576 996 68 8 8 chr3 129922115 129922248 -29677535 - B1_Mus2 SINE Alu -5 142 10 8 1576 229 254 14 0 chr3 129922892 129922963 -29676820 - L1MA8 LINE L1 -4 6287 6216 8 1576 449 212 144 0 chr3 129922971 129923089 -29676694 - L1MA8 LINE L1 -27 6264 6130 8 1576 384 22 0 0 chr3 129923482 129923527 -29676256 + (GA)n Simple_repeat Simple_repeat 2 46 0 8 1576 541 187 0 5 chr3 129923854 129923965 -29675818 - ORR1C1 LTR MaLR -263 111 5 8 1576 186 43 0 0 chr3 129925042 129925065 -29674718 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 8 1576 199 324 33 72 chr3 129925303 129925456 -29674327 + MIRc SINE MIR 75 221 -47 8 1576 431 266 9 27 chr3 129925637 129925749 -29674034 + PB1D10 SINE Alu 2 111 -6 8 1576 613 319 139 40 chr3 129925906 129926281 -29673502 + MLT2B1 LTR ERVL 14 425 -95 8 1576 347 281 91 0 chr3 129926495 129926616 -29673167 + ERVL-B4-int LTR ERVL 3501 3632 -2082 8 1576 590 185 0 68 chr3 129926694 129926885 -29672898 + (TA)n Simple_repeat Simple_repeat 2 179 0 8 1576 4955 261 86 84 chr3 129926928 129928633 -29671150 + ERVL-B4-int LTR ERVL 3699 5379 -335 8 1576 1157 222 14 0 chr3 129928633 129928845 -29670938 - B3 SINE B2 0 216 2 8 1576 4955 261 86 84 chr3 129928845 129929128 -29670655 + ERVL-B4-int LTR ERVL 5380 5691 -23 8 1576 619 272 198 118 chr3 129929132 129929641 -29670142 + MLT2B4 LTR ERVL 3 552 -4 8 1576 622 188 17 12 chr3 129929917 129930089 -29669694 + CT-rich Low_complexity Low_complexity 3 175 0 8 1576 225 407 0 18 chr3 129930816 129930926 -29668857 - L2c LINE L2 -160 3227 3120 8 1576 180 310 34 11 chr3 129931915 129932003 -29667780 + L2 LINE L2 2068 2157 -1262 8 1576 1725 76 17 21 chr3 129932689 129932930 -29666853 - L1_Mus3 LINE L1 -5 6633 6394 8 1576 2912 70 5 0 chr3 129932930 129933304 -29666479 + L1_Mus3 LINE L1 6019 6394 -244 8 1576 1170 69 7 0 chr3 129933321 129933466 -29666317 - B1_Mus1 SINE Alu 0 148 3 8 1576 228 135 0 0 chr3 129934209 129934246 -29665537 + (TG)n Simple_repeat Simple_repeat 2 38 0 8 1576 410 303 72 7 chr3 129934364 129934517 -29665266 - Lx8 LINE L1 -161 7312 7150 8 1576 853 262 80 0 chr3 129936968 129937231 -29662552 - L3b LINE CR1 -169 313 30 8 1576 1225 170 4 43 chr3 129937665 129937899 -29661884 - URR1B DNA MER1_type 0 225 1 8 1576 1282 211 132 26 chr3 129938110 129938456 -29661327 + MTD LTR MaLR 1 405 -14 8 1576 204 346 19 19 chr3 129940298 129940401 -29659382 - MIRb SINE MIR -70 198 96 8 1576 398 254 0 91 chr3 129941393 129941475 -29658308 - B4A SINE B4 -1 291 218 8 1576 2761 62 6 0 chr3 129941475 129941800 -29657983 + ORR1A2 LTR MaLR 1 327 0 8 1576 398 254 0 91 chr3 129941800 129941838 -29657945 - B4A SINE B4 -75 217 182 8 1576 277 300 20 20 chr3 129941802 129941904 -29657879 - PB1D10 SINE Alu -10 107 6 8 1576 289 257 16 99 chr3 129941875 129941996 -29657787 - B3 SINE B2 -87 111 1 8 1576 1376 298 80 72 chr3 129942496 129942541 -29657242 - L1M4 LINE L1 -5671 871 846 8 1576 1447 78 0 164 chr3 129942541 129942803 -29656980 - Lx3_Mus LINE L1 0 7009 6791 8 1576 1376 298 80 72 chr3 129942803 129943595 -29656188 - L1M4 LINE L1 -5697 845 27 8 1576 834 86 0 0 chr3 129944682 129944798 -29654985 + (TTCC)n Simple_repeat Simple_repeat 3 118 0 8 1576 1347 90 17 0 chr3 129944798 129944976 -29654807 - B2_Mm2 SINE B2 -14 181 1 8 1576 815 206 0 0 chr3 129945231 129945372 -29654411 + B1_Mur1 SINE Alu 1 141 -8 8 1576 706 184 13 26 chr3 129947413 129947564 -29652219 - L1Md_F3 LINE L1 -1 6583 6435 8 1576 32 0 0 0 chr3 129947571 129947603 -29652180 + AT_rich Low_complexity Low_complexity 1 32 0 8 1576 795 237 93 0 chr3 129947605 129947799 -29651984 - B3 SINE B2 -3 213 2 8 1576 1031 328 58 51 chr3 129948238 129948541 -29651242 - MER82 DNA MER2_type -10 643 322 8 1576 237 33 0 0 chr3 129948541 129948571 -29651212 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 8 1576 1153 22 0 0 chr3 129948572 129948706 -29651077 - B1_Mm SINE Alu -12 135 2 8 1576 1031 328 58 51 chr3 129948706 129948972 -29650811 - MER82 DNA MER2_type -332 321 68 8 1576 988 304 14 64 chr3 129949653 129950095 -29649688 + MTC LTR MaLR 2 407 -14 8 1576 803 247 24 0 chr3 129950478 129950648 -29649135 - B3 SINE B2 -42 174 1 8 1576 24 53 0 0 chr3 129950648 129950686 -29649097 + AT_rich Low_complexity Low_complexity 1 38 0 8 1576 3567 264 69 11 chr3 129950772 129951785 -29647998 - Lx8 LINE L1 -50 7423 6352 8 1576 695 243 132 5 chr3 129952447 129952637 -29647146 + B3 SINE B2 3 216 0 8 1576 696 215 52 0 chr3 129952658 129952793 -29646990 + B1_Mur4 SINE Alu 2 143 -7 8 1576 34 42 0 0 chr3 129952794 129952842 -29646941 + AT_rich Low_complexity Low_complexity 1 48 0 8 1576 500 268 12 18 chr3 129952892 129953034 -29646749 + B1_Mus1 SINE Alu 15 149 0 8 1576 4500 38 2 2 chr3 129955967 129956496 -29643287 - L1Md_F2 LINE L1 -4 6578 6050 8 1576 779 56 9 10 chr3 129956496 129956599 -29643184 + L1Md_F2 LINE L1 5951 6051 -531 8 1576 333 0 0 0 chr3 129956882 129956919 -29642864 + (TCTA)n Simple_repeat Simple_repeat 2 38 0 8 1576 581 283 76 22 chr3 129958059 129958524 -29641259 - L1M4 LINE L1 -789 5389 4837 8 1576 484 264 107 48 chr3 129958656 129958843 -29640940 - B3A SINE B2 0 198 1 8 1576 27 0 0 0 chr3 129959075 129959102 -29640681 + AT_rich Low_complexity Low_complexity 1 27 0 8 1576 428 51 17 0 chr3 129960172 129960231 -29639552 + (TC)n Simple_repeat Simple_repeat 1 60 0 8 1576 212 284 120 8 chr3 129960293 129960410 -29639373 - B3 SINE B2 0 216 87 8 1576 189 51 77 0 chr3 129960442 129960481 -29639302 + (TA)n Simple_repeat Simple_repeat 2 43 0 8 1576 724 273 43 0 chr3 129960734 129960943 -29638840 - L1MA4 LINE L1 -406 5894 5677 8 1576 860 74 8 0 chr3 129961042 129961163 -29638620 + (TCCC)n Simple_repeat Simple_repeat 4 125 0 8 1576 726 221 21 0 chr3 129961202 129961342 -29638441 - B1_Mus1 SINE Alu -1 147 5 8 1576 1020 293 137 34 chr3 129961454 129961837 -29637946 - L1MA4 LINE L1 -1104 5039 4640 8 1576 532 235 141 21 chr3 129961837 129962028 -29637755 - B3 SINE B2 -2 214 1 8 1576 1020 293 137 34 chr3 129962028 129962219 -29637564 - L1MA4 LINE L1 -1504 4639 4410 8 1576 336 48 0 0 chr3 129962219 129962261 -29637522 + (TG)n Simple_repeat Simple_repeat 2 43 0 8 1576 1020 293 137 34 chr3 129962261 129962576 -29637207 - L1MA4 LINE L1 -1734 4409 4058 8 1576 23 0 0 0 chr3 129962582 129962605 -29637178 + AT_rich Low_complexity Low_complexity 1 23 0 8 1576 955 211 73 136 chr3 129962736 129963119 -29636664 + ORR1E LTR MaLR 1 359 0 8 1576 234 308 33 41 chr3 129963121 129963243 -29636540 + MLT1F LTR MaLR 75 195 -354 8 1576 241 278 112 41 chr3 129963297 129963466 -29636317 + MLT1F LTR MaLR 195 375 -173 8 1576 1100 68 0 27 chr3 129963785 129963935 -29635848 - B1_Mus1 SINE Alu -1 147 2 8 1576 277 233 115 10 chr3 129964637 129964741 -29635042 + LTR78 LTR ERV1 1125 1239 -65 8 1576 3579 94 11 15 chr3 129965052 129965572 -29634211 + L1_Mus3 LINE L1 6117 6634 -4 8 1576 378 61 0 0 chr3 129966917 129966966 -29632817 + (TTTA)n Simple_repeat Simple_repeat 2 50 0 8 1576 249 33 0 0 chr3 129968883 129968913 -29630870 + (TTTTTG)n Simple_repeat Simple_repeat 2 31 0 8 1576 220 289 11 53 chr3 129969149 129969244 -29630539 - MIRc SINE MIR -42 226 136 8 1576 210 255 0 0 chr3 129969244 129969291 -29630492 + GA-rich Low_complexity Low_complexity 1 47 0 8 1576 1245 119 119 0 chr3 129970346 129970547 -29629236 - URR1B DNA MER1_type 0 225 1 8 1576 390 69 0 0 chr3 129971896 129971954 -29627829 + (TG)n Simple_repeat Simple_repeat 2 59 0 8 1576 527 384 43 18 chr3 129972119 129972514 -29627269 - MLT1I LTR MaLR 0 411 7 8 1576 2287 81 62 3 chr3 129974310 129974619 -29625164 + ORR1A2 LTR MaLR 1 327 0 8 1576 2825 290 81 44 chr3 129974719 129975841 -29623942 - Lx8 LINE L1 -224 7249 6086 8 1576 394 245 92 33 chr3 129975988 129976140 -29623643 - L1_Mur3 LINE L1 -727 5153 4993 8 1576 1164 199 9 0 chr3 129976162 129976378 -29623405 + URR1B DNA MER1_type 8 225 0 8 1576 617 265 0 0 chr3 129976381 129976532 -29623251 - L1_Mur3 LINE L1 -874 5006 4856 8 1576 234 91 0 0 chr3 129976603 129976636 -29623147 + (TG)n Simple_repeat Simple_repeat 2 34 0 9 1576 219 114 0 0 chr3 129977854 129977889 -29621894 + (GGAGA)n Simple_repeat Simple_repeat 2 36 0 9 1576 1415 98 0 5 chr3 129977903 129978098 -29621685 + B2_Mm2 SINE B2 1 194 -1 9 1576 227 284 64 72 chr3 129979518 129979643 -29620140 - LTR48B LTR ERV1 -519 125 2 9 1576 480 35 0 0 chr3 129979846 129979904 -29619879 + (CA)n Simple_repeat Simple_repeat 1 58 0 9 1576 631 271 70 112 chr3 129980068 129980451 -29619332 - MLT1B LTR MaLR -10 380 14 9 1576 369 277 257 46 chr3 129982217 129982262 -29617521 + MER2 DNA MER2_type 8 56 -289 9 1576 3549 48 0 5 chr3 129982262 129982700 -29617083 + L1Md_F2 LINE L1 6146 6581 -1 9 1576 369 277 257 46 chr3 129982700 129982915 -29616868 + MER2 DNA MER2_type 57 322 -23 9 1576 252 218 0 0 chr3 129982974 129983061 -29616722 + (TCTG)n Simple_repeat Simple_repeat 4 90 0 9 1576 297 0 0 0 chr3 129983195 129983228 -29616555 + (CA)n Simple_repeat Simple_repeat 2 34 0 9 1576 441 0 0 0 chr3 129983997 129984046 -29615737 + (TC)n Simple_repeat Simple_repeat 1 49 0 9 1576 342 0 0 0 chr3 129984046 129984083 -29615700 + (CA)n Simple_repeat Simple_repeat 1 38 0 9 1576 853 208 93 5 chr3 129984156 129984349 -29615434 - B3 SINE B2 -6 210 1 9 1576 247 257 55 37 chr3 129984731 129984840 -29614943 - MLT1B LTR MaLR -41 349 239 9 1576 202 370 83 0 chr3 129985107 129985215 -29614568 + MIRb SINE MIR 38 154 -114 9 1576 224 385 95 12 chr3 129985585 129985827 -29613956 + L3 LINE CR1 4208 4469 -20 9 1576 204 40 0 0 chr3 129987045 129987070 -29612713 + (CAGG)n Simple_repeat Simple_repeat 2 26 0 9 1576 193 28 0 100 chr3 129987954 129987994 -29611789 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 9 1576 264 56 36 36 chr3 129988314 129988370 -29611413 + (CAAA)n Simple_repeat Simple_repeat 1 56 0 9 1576 1112 66 0 0 chr3 129988553 129988690 -29611093 - B1_Mus1 SINE Alu -8 140 4 9 1576 984 269 167 34 chr3 129988781 129989423 -29610360 + L1MA8 LINE L1 5538 6264 -27 9 1576 332 169 0 27 chr3 129989424 129989497 -29610286 + (CATATA)n Simple_repeat Simple_repeat 2 72 0 9 1576 229 333 11 0 chr3 129989761 129989848 -29609935 + Charlie4z DNA MER1_type 48 135 -32 9 1576 665 284 58 54 chr3 129990274 129990516 -29609267 - B4 SINE B4 -11 281 39 9 1576 208 298 0 113 chr3 129990662 129990768 -29609015 - MIR SINE MIR -77 185 92 9 1576 315 0 0 0 chr3 129990795 129990830 -29608953 + (TAAA)n Simple_repeat Simple_repeat 3 37 0 9 1576 269 289 0 25 chr3 129992100 129992179 -29607604 - ID2 SINE ID -73 79 3 9 1576 229 214 43 97 chr3 129994051 129994144 -29605639 - MLT1C LTR MaLR -313 154 67 9 1576 368 298 139 40 chr3 129994475 129994727 -29605056 - LTR53 LTR ERVL -65 454 178 9 1576 330 248 168 45 chr3 129994967 129995185 -29604598 - MTEa LTR MaLR -8 371 118 9 1576 297 128 0 0 chr3 129995460 129995507 -29604276 + (T)n Simple_repeat Simple_repeat 1 47 0 9 1576 23 0 0 0 chr3 129995597 129995620 -29604163 + AT_rich Low_complexity Low_complexity 1 23 0 9 1576 315 0 0 0 chr3 129996826 129996861 -29602922 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 9 1576 242 309 10 40 chr3 129996887 129996988 -29602795 - MLT1A0 LTR MaLR -19 389 292 9 1576 339 230 21 113 chr3 129998080 129998222 -29601561 - MLT1A0 LTR MaLR -238 136 8 9 1576 212 311 0 0 chr3 130000110 130000171 -29599612 + GA-rich Low_complexity Low_complexity 2 62 0 1 1576 234 329 0 71 chr3 130000180 130000265 -29599518 - L2c LINE L2 -55 3332 3254 2 1576 348 304 95 9 chr3 130002733 130002849 -29596934 + MER2 DNA MER2_type 2 127 -218 3 1576 35 24 0 0 chr3 130002851 130002893 -29596890 + AT_rich Low_complexity Low_complexity 1 42 0 4 1576 622 275 30 0 chr3 130002911 130003042 -29596741 - RSINE1 SINE B4 -29 136 2 5 1576 596 260 84 24 chr3 130003042 130003252 -29596531 + MER2 DNA MER2_type 122 344 -1 3 1576 4802 54 4 7 chr3 130004892 130005453 -29594330 - L1_Mus1 LINE L1 0 6567 6009 6 1576 216 289 10 67 chr3 130007199 130007303 -29592480 + (TA)n Simple_repeat Simple_repeat 1 98 0 7 1576 822 280 62 40 chr3 130007318 130007590 -29592193 - B4 SINE B4 -14 278 1 8 1576 519 273 45 19 chr3 130008298 130008455 -29591328 - MER2B DNA MER2_type 0 336 176 9 1576 207 0 0 0 chr3 130009550 130009573 -29590210 + (T)n Simple_repeat Simple_repeat 1 23 0 1 1576 312 143 0 0 chr3 130009871 130009927 -29589856 + (TG)n Simple_repeat Simple_repeat 1 56 0 1 1576 1828 181 99 6 chr3 130010165 130010499 -29589284 - ORR1B2 LTR MaLR -2 365 1 1 1576 334 283 35 9 chr3 130010597 130010711 -29589072 - Lx8 LINE L1 -945 6528 6412 1 1576 224 205 0 0 chr3 130011586 130011625 -29588158 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 1576 222 37 0 0 chr3 130012758 130012785 -29586998 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 1576 22 0 0 0 chr3 130014682 130014704 -29585079 + AT_rich Low_complexity Low_complexity 1 22 0 1 1576 387 0 0 0 chr3 130015561 130015604 -29584179 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 1576 26 30 0 0 chr3 130018251 130018284 -29581499 + AT_rich Low_complexity Low_complexity 1 33 0 1 1576 276 30 0 0 chr3 130020664 130020697 -29579086 + (CA)n Simple_repeat Simple_repeat 2 34 0 1 1576 917 292 88 32 chr3 130020990 130021829 -29577954 - L1MB1 LINE L1 -148 6152 5242 2 1576 43 0 0 0 chr3 130021896 130021939 -29577844 + AT_rich Low_complexity Low_complexity 1 43 0 2 1576 913 288 126 18 chr3 130021947 130022013 -29577770 - L1MB1 LINE L1 -1131 5012 4935 2 1576 459 0 0 0 chr3 130022013 130022064 -29577719 + (TC)n Simple_repeat Simple_repeat 2 52 0 2 1576 330 26 0 0 chr3 130022064 130022102 -29577681 + (TG)n Simple_repeat Simple_repeat 2 40 0 2 1576 913 288 126 18 chr3 130022102 130022533 -29577250 - L1MB1 LINE L1 -1209 4934 4461 2 1576 682 245 22 0 chr3 130022679 130022818 -29576965 + B1_Mur1 SINE Alu 1 142 -7 2 1576 581 259 27 20 chr3 130022829 130022963 -29576820 + B1_Mus1 SINE Alu 2 139 -9 2 1576 333 0 0 0 chr3 130022963 130023000 -29576783 + (CA)n Simple_repeat Simple_repeat 2 38 0 2 1576 581 259 27 20 chr3 130023000 130023011 -29576772 + B1_Mus1 SINE Alu 140 147 -1 2 1576 396 285 25 7 chr3 130023199 130023368 -29576415 + L1M2 LINE L1 4559 4727 -1413 2 1577 279 284 104 44 chr3 130023499 130023689 -29576094 - MLT1F2 LTR MaLR -96 452 277 2 1577 265 239 31 93 chr3 130024326 130024455 -29575328 + MT2A LTR ERVL 1 121 -412 2 1577 760 231 154 20 chr3 130024349 130024596 -29575187 + MTD LTR MaLR 31 310 -109 3 1577 23 0 0 0 chr3 130025146 130025169 -29574614 + AT_rich Low_complexity Low_complexity 1 23 0 3 1577 896 134 44 15 chr3 130025251 130025387 -29574396 - B1_Mus2 SINE Alu -6 141 2 3 1577 215 206 0 29 chr3 130026336 130026406 -29573377 + CT-rich Low_complexity Low_complexity 1 68 0 3 1577 479 298 65 0 chr3 130026406 130026530 -29573253 - B1F2 SINE Alu -1 148 17 3 1577 207 0 0 0 chr3 130027162 130027185 -29572598 + (T)n Simple_repeat Simple_repeat 1 23 0 3 1577 960 215 62 43 chr3 130027677 130027886 -29571897 + B3 SINE B2 1 213 -3 3 1577 534 297 68 12 chr3 130028294 130028543 -29571240 + Lx8 LINE L1 5286 5548 -332 3 1577 339 191 0 0 chr3 130028553 130028621 -29571162 + CT-rich Low_complexity Low_complexity 3 70 0 3 1577 1001 216 36 18 chr3 130028733 130028955 -29570828 - RMER19C LTR ERVK 0 611 386 3 1577 962 237 84 4 chr3 130028984 130029274 -29570509 + Lx8 LINE L1 5575 5920 -1553 3 1577 456 271 125 23 chr3 130029464 130029728 -29570055 + B4 SINE B4 1 291 -1 4 1577 351 273 0 0 chr3 130029730 130029971 -29569812 + (CA)n Simple_repeat Simple_repeat 1 241 0 4 1577 333 278 0 0 chr3 130029983 130030073 -29569710 + (CA)n Simple_repeat Simple_repeat 1 90 0 4 1577 1515 54 54 0 chr3 130032194 130032379 -29567404 - B2_Mm2 SINE B2 0 195 1 4 1577 292 224 0 15 chr3 130032579 130032647 -29567136 - MTC LTR MaLR -354 67 1 4 1577 442 292 147 20 chr3 130033371 130033616 -29566167 + B4 SINE B4 1 276 -16 4 1577 240 35 0 0 chr3 130033625 130033654 -29566129 + (TG)n Simple_repeat Simple_repeat 1 29 0 4 1577 1625 49 0 0 chr3 130034370 130034554 -29565229 + B2_Mm1a SINE B2 1 184 -9 4 1577 21 57 0 0 chr3 130036680 130036715 -29563068 + AT_rich Low_complexity Low_complexity 1 35 0 4 1577 207 0 0 0 chr3 130036725 130036748 -29563035 + (T)n Simple_repeat Simple_repeat 1 23 0 4 1577 862 279 130 46 chr3 130037067 130037650 -29562133 - L1MC1 LINE L1 -352 5981 5350 4 1577 816 252 181 31 chr3 130037740 130037994 -29561789 - B4 SINE B4 0 292 1 5 1577 422 243 195 53 chr3 130037994 130038221 -29561562 - L1MC1 LINE L1 -2454 5331 5072 4 1577 237 259 88 158 chr3 130038232 130038349 -29561434 - L1MC1 LINE L1 -1597 4549 4437 4 1577 799 286 5 5 chr3 130038349 130038556 -29561227 - B3 SINE B2 -9 207 1 5 1577 237 259 88 158 chr3 130038556 130038768 -29561015 - L1MC1 LINE L1 -1710 4436 4243 4 1577 297 89 0 0 chr3 130038804 130038849 -29560934 + (CA)n Simple_repeat Simple_repeat 2 46 0 5 1577 196 300 99 12 chr3 130039585 130039666 -29560117 + L2c LINE L2 3070 3157 -230 5 1577 966 101 58 0 chr3 130042009 130042148 -29557635 - B1_Mus1 SINE Alu 0 148 2 5 1577 468 0 0 0 chr3 130044138 130044190 -29555593 + (TG)n Simple_repeat Simple_repeat 2 53 0 5 1577 220 281 30 30 chr3 130044190 130044249 -29555534 - RSINE1 SINE B4 -53 112 53 5 1577 1983 169 21 0 chr3 130044241 130044566 -29555217 - MTC LTR MaLR -89 332 1 5 1577 189 100 39 20 chr3 130045507 130045558 -29554225 + (TTATA)n Simple_repeat Simple_repeat 1 52 0 5 1577 2866 136 2 7 chr3 130045620 130046056 -29553727 + Lx2A1 LINE L1 6564 6997 -11 5 1577 287 212 14 43 chr3 130046574 130046643 -29553140 + MER57A-int LTR ERV1 5798 5864 -323 6 1577 3941 151 68 26 chr3 130046694 130047025 -29552758 - RMER6D LTR ERVK -4 716 370 6 1577 468 51 0 0 chr3 130047025 130047084 -29552699 + (CA)n Simple_repeat Simple_repeat 1 59 0 6 1577 3941 151 68 26 chr3 130047084 130047439 -29552344 - RMER6D LTR ERVK -351 369 1 6 1577 413 229 90 165 chr3 130047520 130047708 -29552075 - MTEa LTR MaLR -3 376 203 6 1577 1298 307 75 50 chr3 130047728 130048772 -29551011 - Lx8 LINE L1 -955 6518 5397 6 1577 243 0 0 0 chr3 130050491 130050518 -29549265 + (T)n Simple_repeat Simple_repeat 1 27 0 6 1577 262 329 113 73 chr3 130050673 130050824 -29548959 + B4 SINE B4 2 158 -134 6 1577 1033 221 10 10 chr3 130051069 130051275 -29548508 - B3 SINE B2 -1 215 10 6 1577 354 274 0 35 chr3 130051712 130051799 -29547984 - LFSINE_Vert SINE SINE -375 84 1 6 1577 245 296 0 0 chr3 130052794 130052848 -29546935 + (TG)n Simple_repeat Simple_repeat 1 54 0 6 1577 1231 56 0 0 chr3 130052928 130053071 -29546712 - B1_Mm SINE Alu -1 146 4 7 1577 473 0 18 0 chr3 130053133 130053190 -29546593 + (GA)n Simple_repeat Simple_repeat 1 58 0 7 1577 338 237 63 21 chr3 130053748 130053843 -29545940 - PB1D10 SINE Alu 0 117 19 7 1577 319 295 8 30 chr3 130054166 130054299 -29545484 + CT-rich Low_complexity Low_complexity 3 132 0 7 1577 291 267 0 0 chr3 130054300 130054360 -29545423 - ID4 SINE ID -14 69 10 7 1577 323 134 30 0 chr3 130054363 130054430 -29545353 + (TATG)n Simple_repeat Simple_repeat 2 70 0 7 1577 22 0 0 0 chr3 130054595 130054617 -29545166 + AT_rich Low_complexity Low_complexity 1 22 0 7 1577 438 69 0 0 chr3 130055513 130055571 -29544212 + (TG)n Simple_repeat Simple_repeat 1 58 0 7 1577 259 236 125 0 chr3 130057970 130058042 -29541741 - L2a LINE L2 0 3426 3346 7 1577 462 36 0 0 chr3 130058570 130058626 -29541157 + (TC)n Simple_repeat Simple_repeat 1 56 0 7 1577 465 19 0 0 chr3 130058626 130058679 -29541104 + (CA)n Simple_repeat Simple_repeat 1 54 0 8 1577 239 336 74 96 chr3 130058862 130058997 -29540786 - B4A SINE B4 -128 164 33 8 1577 22 0 0 0 chr3 130060100 130060122 -29539661 + AT_rich Low_complexity Low_complexity 1 22 0 8 1577 202 255 0 56 chr3 130060137 130060191 -29539592 - L2a LINE L2 -66 3321 3271 7 1577 26 50 0 0 chr3 130060388 130060428 -29539355 + AT_rich Low_complexity Low_complexity 1 40 0 8 1577 198 0 0 0 chr3 130061233 130061255 -29538528 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 8 1577 342 0 0 0 chr3 130062186 130062224 -29537559 + (CA)n Simple_repeat Simple_repeat 2 39 0 8 1577 740 290 82 0 chr3 130062225 130062470 -29537313 - B4A SINE B4 -12 280 16 8 1577 444 212 118 8 chr3 130062471 130062590 -29537193 + B3 SINE B2 68 199 -17 8 1577 322 272 120 62 chr3 130064581 130065068 -29534715 - L1MA8 LINE L1 -27 6273 5781 8 1577 326 95 0 31 chr3 130066363 130066428 -29533355 + (TCTCTG)n Simple_repeat Simple_repeat 6 68 0 8 1577 193 154 19 37 chr3 130070090 130070144 -29529639 + CT-rich Low_complexity Low_complexity 1 53 0 9 1577 509 137 51 31 chr3 130071082 130071123 -29528660 + B1_Mur3 SINE Alu 9 50 -99 9 1577 351 0 0 0 chr3 130071123 130071162 -29528621 + (CA)n Simple_repeat Simple_repeat 2 40 0 9 1577 486 0 0 0 chr3 130071162 130071215 -29528568 + (GA)n Simple_repeat Simple_repeat 2 55 0 9 1577 509 142 95 39 chr3 130071215 130071297 -29528486 + B1_Mur3 SINE Alu 51 148 -1 9 1577 28 29 0 0 chr3 130072024 130072059 -29527724 + AT_rich Low_complexity Low_complexity 1 35 0 9 1577 209 125 25 0 chr3 130074101 130074141 -29525642 + (TTTTG)n Simple_repeat Simple_repeat 2 42 0 9 1577 804 193 0 20 chr3 130074144 130074292 -29525491 - B1_Mur2 SINE Alu -1 148 4 9 1577 182 247 78 56 chr3 130074652 130074742 -29525041 - L2c LINE L2 -50 3337 3246 9 1577 482 285 142 22 chr3 130075147 130075330 -29524453 + B4 SINE B4 70 274 -18 9 1577 354 23 0 0 chr3 130075335 130075378 -29524405 + (CA)n Simple_repeat Simple_repeat 2 44 0 9 1577 261 0 0 0 chr3 130078772 130078801 -29520982 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 1 1577 867 155 0 0 chr3 130079559 130079733 -29520050 + (TG)n Simple_repeat Simple_repeat 2 175 0 1 1577 759 173 0 0 chr3 130079718 130079886 -29519897 + (TATG)n Simple_repeat Simple_repeat 3 170 0 1 1577 232 152 33 17 chr3 130080514 130080574 -29519209 + A-rich Low_complexity Low_complexity 4 64 0 1 1577 393 299 75 0 chr3 130080873 130081007 -29518776 + B1F SINE Alu 1 144 -5 1 1577 399 182 0 0 chr3 130082834 130082911 -29516872 + (TA)n Simple_repeat Simple_repeat 1 77 0 1 1577 1211 68 0 0 chr3 130083158 130083306 -29516477 - B1_Mus1 SINE Alu 0 148 1 1 1577 1651 161 82 6 chr3 130083306 130083625 -29516158 - MTC LTR MaLR -5 416 74 1 1577 1282 88 28 0 chr3 130084321 130084502 -29515281 + B2_Mm2 SINE B2 2 187 -8 1 1577 3131 257 72 49 chr3 130084612 130085641 -29514142 - Lx8 LINE L1 -143 7330 6278 1 1577 1155 309 67 58 chr3 130085642 130086029 -29513754 + Lx9 LINE L1 4922 5308 -572 1 1577 219 36 0 0 chr3 130086029 130086057 -29513726 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 1 1577 1155 313 65 58 chr3 130086057 130086708 -29513075 + Lx9 LINE L1 5309 5972 -1672 1 1577 252 59 0 0 chr3 130086725 130086759 -29513024 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 1 1577 276 102 0 0 chr3 130087242 130087291 -29512492 + (TC)n Simple_repeat Simple_repeat 2 50 0 1 1577 424 172 228 20 chr3 130087292 130087393 -29512390 - B1_Mur2 SINE Alu -17 132 11 1 1577 23 0 0 0 chr3 130087972 130087995 -29511788 + AT_rich Low_complexity Low_complexity 1 23 0 1 1577 192 77 0 0 chr3 130088305 130088331 -29511452 + (TTC)n Simple_repeat Simple_repeat 2 27 0 1 1577 216 0 0 0 chr3 130088687 130088711 -29511072 + (TTTA)n Simple_repeat Simple_repeat 4 27 0 1 1577 240 111 0 0 chr3 130089159 130089195 -29510588 + (T)n Simple_repeat Simple_repeat 1 36 0 1 1577 318 106 0 0 chr3 130091708 130091755 -29508028 + (TGG)n Simple_repeat Simple_repeat 3 49 0 1 1577 526 198 18 0 chr3 130093701 130093812 -29505971 + ORR1D2 LTR MaLR 1 113 -257 1 1577 353 202 219 9 chr3 130093823 130093928 -29505855 + ORR1D2 LTR MaLR 238 364 -6 1 1577 586 249 134 87 chr3 130095359 130095636 -29504147 - B4A SINE B4 -2 290 1 1 1577 323 328 15 23 chr3 130096286 130096417 -29503366 - MIRb SINE MIR -117 151 22 1 1577 649 245 315 55 chr3 130096804 130097103 -29502680 - MTE2b LTR MaLR -1 378 2 1 1577 1042 171 41 5 chr3 130097322 130097516 -29502267 - MTD LTR MaLR 0 419 219 1 1577 21 0 0 0 chr3 130097579 130097600 -29502183 + AT_rich Low_complexity Low_complexity 1 21 0 1 1577 1437 144 75 54 chr3 130097600 130097879 -29501904 - Lx4A LINE L1 -1 7057 6773 1 1577 972 66 20 68 chr3 130097870 130098016 -29501767 + Lx4A LINE L1 6240 6378 -680 1 1577 405 0 0 0 chr3 130098105 130098150 -29501633 + (CA)n Simple_repeat Simple_repeat 1 45 0 1 1577 1141 262 140 3 chr3 130099614 130099935 -29499848 + MTEa LTR MaLR 1 365 -14 1 1577 487 282 50 44 chr3 130100005 130100187 -29499596 - MTD LTR MaLR -196 183 1 1 1577 2672 81 3 0 chr3 130100467 130100813 -29498970 - L1_Mus2 LINE L1 -236 5647 5301 1 1577 5268 49 0 3 chr3 130100814 130101449 -29498334 + L1_Mus2 LINE L1 5653 6285 -281 1 1577 1130 112 16 11 chr3 130101449 130101638 -29498145 - RLTR13A3 LTR ERVK 0 978 789 1 1577 1875 81 21 39 chr3 130101638 130101921 -29497862 + L1_Mus2 LINE L1 6289 6566 0 1 1577 696 309 52 106 chr3 130102088 130102330 -29497453 - MLT2C2 LTR ERVL -8 456 243 1 1577 993 87 0 0 chr3 130102330 130102468 -29497315 - L1_Mus1 LINE L1 -3 6564 6427 1 1577 696 309 52 106 chr3 130102468 130102706 -29497077 - MLT2C2 LTR ERVL -222 242 2 1 1577 881 311 70 22 chr3 130102972 130103331 -29496452 - Lx8 LINE L1 -612 6861 6486 1 1577 226 244 0 0 chr3 130103903 130103948 -29495835 + A-rich Low_complexity Low_complexity 4 48 0 1 1577 27 62 0 0 chr3 130105990 130106038 -29493745 + AT_rich Low_complexity Low_complexity 1 48 0 1 1577 2533 94 8 3 chr3 130106428 130106781 -29493002 - L1_Mus4 LINE L1 -5 6631 6277 1 1577 479 95 0 13 chr3 130110006 130110081 -29489702 + (CA)n Simple_repeat Simple_repeat 2 75 0 1 1577 180 244 67 0 chr3 130110611 130110656 -29489127 + MIRm SINE MIR 209 256 -20 1 1577 981 270 162 10 chr3 130111613 130111916 -29487867 + MTE2a LTR MaLR 19 367 -12 1 1577 24 0 0 0 chr3 130113424 130113448 -29486335 + AT_rich Low_complexity Low_complexity 1 24 0 1 1577 317 323 102 0 chr3 130113517 130113644 -29486139 - HAL1-3A_ME LINE L1 -435 2423 2284 1 1577 224 233 0 14 chr3 130113644 130113718 -29486065 + CT-rich Low_complexity Low_complexity 2 74 0 1 1577 798 94 0 0 chr3 130114296 130114413 -29485370 + (TC)n Simple_repeat Simple_repeat 2 118 0 1 1577 842 248 64 11 chr3 130114414 130114661 -29485122 - MTD LTR MaLR -61 358 39 1 1577 219 103 0 0 chr3 130115995 130116034 -29483749 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 1 1577 21 0 0 0 chr3 130116083 130116104 -29483679 + AT_rich Low_complexity Low_complexity 1 21 0 1 1577 243 0 0 0 chr3 130117030 130117057 -29482726 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 1577 391 177 145 8 chr3 130117064 130117080 -29482703 - RMER17B LTR ERVK -511 447 432 1 1577 621 0 0 0 chr3 130117080 130117149 -29482634 + (GA)n Simple_repeat Simple_repeat 2 70 0 1 1577 391 177 145 8 chr3 130117149 130117263 -29482520 - RMER17B LTR ERVK -527 431 299 1 1577 620 286 38 6 chr3 130117271 130117454 -29482329 + B3 SINE B2 28 216 0 1 1577 540 343 32 5 chr3 130118087 130118456 -29481327 - L1_Rod LINE L1 -3378 2469 2091 1 1577 435 38 0 0 chr3 130118799 130118852 -29480931 + (CCTA)n Simple_repeat Simple_repeat 2 54 0 1 1577 1294 291 56 10 chr3 130118984 130119397 -29480386 - Lx8 LINE L1 -493 6980 6549 1 1577 656 280 5 21 chr3 130119427 130119613 -29480170 - B3A SINE B2 -15 183 1 1 1577 204 40 0 0 chr3 130120666 130120691 -29479092 + (CCCCCA)n Simple_repeat Simple_repeat 4 28 0 1 1577 655 105 16 0 chr3 130122931 130123055 -29476728 + (TG)n Simple_repeat Simple_repeat 2 127 0 1 1577 284 393 50 57 chr3 130123226 130123523 -29476260 - LTR16E2 LTR ERVL 0 568 274 1 1577 28 48 0 0 chr3 130123714 130123756 -29476027 + AT_rich Low_complexity Low_complexity 1 42 0 1 1577 609 269 58 39 chr3 130123931 130124190 -29475593 - L1MA7 LINE L1 -318 5973 5710 1 1577 672 212 90 94 chr3 130124189 130124322 -29475461 - L1MA6 LINE L1 -366 5934 5797 1 1577 357 125 0 0 chr3 130124322 130124378 -29475405 + (TA)n Simple_repeat Simple_repeat 1 56 0 1 1577 318 26 0 0 chr3 130124378 130124416 -29475367 + (GA)n Simple_repeat Simple_repeat 2 40 0 1 1577 672 229 256 58 chr3 130124416 130124734 -29475049 - L1MA6 LINE L1 -504 5796 5421 1 1577 637 197 8 25 chr3 130125737 130125857 -29473926 - B3 SINE B2 -4 212 95 1 1577 2411 180 69 37 chr3 130125874 130126383 -29473400 - RLTR12B LTR ERVK -3 525 1 1 1577 421 141 0 15 chr3 130126401 130126466 -29473317 - B3 SINE B2 -150 66 3 1 1577 308 288 0 0 chr3 130128011 130128084 -29471699 - ID2 SINE ID -10 73 1 1 1577 312 268 83 10 chr3 130128204 130128340 -29471443 + MIR SINE MIR 8 153 -115 1 1577 211 288 99 16 chr3 130129020 130129146 -29470637 - MIRc SINE MIR -83 179 40 1 1577 200 310 0 0 chr3 130129340 130129398 -29470385 + (CGTG)n Simple_repeat Simple_repeat 2 59 0 1 1577 282 290 16 0 chr3 130129787 130129849 -29469934 + PB1D10 SINE Alu 1 63 -54 1 1577 376 326 0 10 chr3 130130703 130130799 -29468984 - PB1 SINE Alu -20 107 13 1 1577 27 0 0 0 chr3 130132019 130132046 -29467737 + AT_rich Low_complexity Low_complexity 1 27 0 1 1577 487 177 8 30 chr3 130132360 130132494 -29467289 + GA-rich Low_complexity Low_complexity 1 131 0 1 1577 226 307 37 59 chr3 130133883 130134019 -29465764 - MIRc SINE MIR -98 170 33 1 1577 251 265 10 0 chr3 130134481 130134583 -29465200 + (TA)n Simple_repeat Simple_repeat 1 103 0 1 1577 872 127 18 6 chr3 130135253 130135419 -29464364 + CT-rich Low_complexity Low_complexity 4 171 0 1 1577 202 219 13 27 chr3 130135439 130135514 -29464269 + CT-rich Low_complexity Low_complexity 5 78 0 1 1577 414 175 0 0 chr3 130136620 130136700 -29463083 + CT-rich Low_complexity Low_complexity 2 81 0 1 1577 219 69 0 0 chr3 130136986 130137015 -29462768 + (CA)n Simple_repeat Simple_repeat 2 30 0 1 1577 1232 119 118 5 chr3 130137094 130137297 -29462486 + URR1A DNA MER1_type 1 226 0 1 1577 516 254 254 0 chr3 130137625 130137794 -29461989 + B3 SINE B2 1 212 -4 1 1577 187 302 129 7 chr3 130139295 130139435 -29460348 + MIRb SINE MIR 38 194 -74 1 1577 302 327 70 32 chr3 130139562 130139720 -29460063 + L1M5 LINE L1 4967 5130 -1016 1 1577 308 358 51 6 chr3 130140048 130140225 -29459558 + L1M5 LINE L1 4838 5022 -1124 1 1577 321 263 13 0 chr3 130140365 130140441 -29459342 + ID4 SINE ID 1 77 -6 1 1577 228 314 29 0 chr3 130140466 130140568 -29459215 + L1M5 LINE L1 5171 5275 -871 1 1577 1661 264 49 6 chr3 130140757 130141244 -29458539 - RLTR12B LTR ERVK -20 508 1 1 1577 323 307 143 30 chr3 130141253 130141582 -29458201 + L1M5 LINE L1 5408 5773 -400 1 1577 252 0 0 0 chr3 130145249 130145277 -29454506 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 1 1577 301 250 0 0 chr3 130145464 130145532 -29454251 + ID_B1 SINE B4 153 220 -4 1 1577 389 99 37 12 chr3 130146039 130146121 -29453662 + (CA)n Simple_repeat Simple_repeat 1 84 0 1 1577 705 88 50 6 chr3 130146149 130146309 -29453474 + (CA)n Simple_repeat Simple_repeat 1 167 0 1 1577 1047 112 6 17 chr3 130146452 130146633 -29453150 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 1 1577 859 259 176 17 chr3 130148117 130148412 -29451371 + MTEa LTR MaLR 38 379 0 1 1577 293 317 117 25 chr3 130148815 130148952 -29450831 - MIR SINE MIR -80 188 36 1 1577 244 270 0 60 chr3 130149556 130149623 -29450160 - ID4 SINE ID -9 74 12 1 1577 224 274 0 99 chr3 130149623 130149637 -29450146 - ID SINE ID -149 75 3 1 1577 8801 23 0 0 chr3 130149983 130151073 -29448710 - L1_Mm LINE L1 -2443 3440 2351 1 1577 689 263 100 23 chr3 130152273 130152534 -29447249 + B4A SINE B4 1 281 -11 1 197 5565 81 55 4 chr3 130154339 130155780 -29444003 + L1VL2 LINE L1 305 1826 -1789 1 1578 336 303 0 0 chr3 130155919 130156008 -29443775 - PB1D10 SINE Alu -2 115 27 1 1578 243 0 0 0 chr3 130156648 130156675 -29443108 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 1578 3928 15 0 0 chr3 130157874 130158343 -29441440 - L1Md_T LINE L1 -233 5650 5182 1 1578 7417 59 0 0 chr3 130158343 130159270 -29440513 + L1Md_T LINE L1 5644 6570 -12 1 1578 315 71 0 0 chr3 130159577 130159619 -29440164 + (TA)n Simple_repeat Simple_repeat 2 43 0 2 1578 333 239 0 0 chr3 130160029 130160096 -29439687 - RSINE1 SINE B4 -95 70 4 2 1578 326 130 0 0 chr3 130160257 130160303 -29439480 + (TCCC)n Simple_repeat Simple_repeat 3 48 0 2 1578 755 102 17 0 chr3 130160303 130160421 -29439362 + (TTTC)n Simple_repeat Simple_repeat 2 121 0 2 1578 300 270 90 0 chr3 130162641 130162730 -29437053 + ID_B1 SINE B4 80 176 -48 2 1578 535 155 0 0 chr3 130162661 130162745 -29437038 + PB1D10 SINE Alu 27 110 -7 2 1578 329 283 156 21 chr3 130164144 130164163 -29435620 - B4 SINE B4 -49 243 133 2 1578 545 267 0 0 chr3 130164163 130164279 -29435504 - PB1D7 SINE Alu -1 119 4 2 1578 21 0 0 0 chr3 130165302 130165323 -29434460 + AT_rich Low_complexity Low_complexity 1 21 0 2 1578 271 272 155 31 chr3 130165679 130165808 -29433975 + RSINE1 SINE B4 4 148 -17 2 1578 183 286 0 67 chr3 130165809 130165869 -29433914 + L2c LINE L2 3331 3386 -1 2 1578 276 294 8 70 chr3 130166155 130166220 -29433563 - Lx7 LINE L1 -402 7294 7235 2 1578 2573 161 7 2 chr3 130166220 130166637 -29433146 - MTC LTR MaLR -2 419 1 2 1578 276 294 8 70 chr3 130166637 130166699 -29433084 - Lx7 LINE L1 -462 7234 7175 2 1578 849 213 111 39 chr3 130166711 130166945 -29432838 - Lx7 LINE L1 -883 6813 6563 2 1578 207 162 0 0 chr3 130167721 130167758 -29432025 + G-rich Low_complexity Low_complexity 4 40 0 2 1578 253 297 0 30 chr3 130167767 130167833 -29431950 - ID4 SINE ID -19 64 1 2 1578 465 171 13 0 chr3 130168892 130168968 -29430815 - B3 SINE B2 -139 77 1 2 1578 320 320 100 84 chr3 130169353 130169674 -29430109 - MER46C DNA MER2_type -3 335 10 2 1578 234 0 0 0 chr3 130170542 130170568 -29429215 + (TGG)n Simple_repeat Simple_repeat 1 26 0 2 1578 438 20 0 0 chr3 130170568 130170619 -29429164 + (TG)n Simple_repeat Simple_repeat 1 51 0 2 1578 369 0 0 0 chr3 130170619 130170659 -29429124 + (GA)n Simple_repeat Simple_repeat 1 41 0 2 1578 243 0 0 0 chr3 130171206 130171233 -29428550 + (TGAA)n Simple_repeat Simple_repeat 4 30 0 2 1578 489 209 8 94 chr3 130173605 130173732 -29426051 - PB1D10 SINE Alu -1 116 1 2 1578 205 89 44 0 chr3 130174799 130174844 -29424939 + (CAAAAA)n Simple_repeat Simple_repeat 3 49 0 2 1578 2283 99 16 15 chr3 130174899 130175350 -29424433 - L1_Mus4 LINE L1 -4 6632 6063 2 1578 31 92 0 0 chr3 130175378 130175465 -29424318 + AT_rich Low_complexity Low_complexity 1 87 0 2 1578 1292 55 0 0 chr3 130175699 130175845 -29423938 - B1_Mm SINE Alu 0 147 2 2 1578 325 231 77 0 chr3 130180534 130180612 -29419171 - B4A SINE B4 -208 84 1 2 1578 1296 132 16 21 chr3 130180716 130180909 -29418874 - B2_Mm2 SINE B2 -2 193 2 2 1578 762 204 22 7 chr3 130181008 130181143 -29418640 - B3 SINE B2 -11 205 69 2 1578 578 228 197 16 chr3 130181143 130181326 -29418457 + B3 SINE B2 1 216 0 2 1578 1868 126 95 0 chr3 130182119 130182444 -29417339 - ORR1C1 LTR MaLR -22 356 1 2 1578 226 246 152 88 chr3 130182641 130182766 -29417017 + MLT2F LTR ERVL 254 386 -277 2 1578 214 348 58 0 chr3 130183563 130183632 -29416151 - ID4 SINE ID -2 81 9 2 1578 651 60 0 0 chr3 130183760 130183844 -29415939 + (TTTC)n Simple_repeat Simple_repeat 3 86 0 2 1578 1143 60 8 0 chr3 130183844 130183977 -29415806 - B1_Mus1 SINE Alu -13 135 2 2 1578 374 305 79 0 chr3 130184264 130184428 -29415355 - L1ME2 LINE L1 -138 6024 5848 2 1578 375 272 127 18 chr3 130184550 130184715 -29415068 + MIRc SINE MIR 86 268 0 2 1578 434 280 67 15 chr3 130185045 130185179 -29414604 - B1F SINE Alu -7 142 2 2 1578 510 83 0 0 chr3 130185216 130185288 -29414495 + (TG)n Simple_repeat Simple_repeat 2 73 0 2 1578 1468 206 85 30 chr3 130186459 130186825 -29412958 + MTD LTR MaLR 19 404 -15 2 1578 248 376 68 68 chr3 130188075 130188369 -29411414 - MER115 DNA Tip100 -79 614 321 2 1578 459 261 182 28 chr3 130188532 130188591 -29411192 + MTEa LTR MaLR 170 245 -134 2 1578 540 0 0 0 chr3 130188591 130188651 -29411132 + (TC)n Simple_repeat Simple_repeat 1 60 0 2 1578 351 0 0 0 chr3 130188651 130188689 -29411094 + (CA)n Simple_repeat Simple_repeat 1 39 0 2 1578 459 261 182 28 chr3 130188689 130188809 -29410974 + MTEa LTR MaLR 246 377 -2 2 1578 315 122 0 0 chr3 130190199 130190248 -29409535 + (T)n Simple_repeat Simple_repeat 1 49 0 2 1578 340 331 173 8 chr3 130192635 130193000 -29406783 + L2a LINE L2 3002 3426 0 2 1578 230 0 0 32 chr3 130193918 130193949 -29405834 + (TATATG)n Simple_repeat Simple_repeat 1 30 0 2 1578 512 319 18 42 chr3 130194375 130194542 -29405241 + RSINE1 SINE B4 3 165 0 2 1578 252 233 33 0 chr3 130194860 130194920 -29404863 + (TATG)n Simple_repeat Simple_repeat 4 65 0 2 1578 233 317 114 36 chr3 130195673 130195840 -29403943 - L2 LINE L2 -1614 1805 1626 2 1578 255 125 0 0 chr3 130198442 130198482 -29401301 + (TATATG)n Simple_repeat Simple_repeat 2 41 0 2 1578 606 99 0 0 chr3 130199854 130199945 -29399838 + (TG)n Simple_repeat Simple_repeat 1 91 0 2 1578 3270 40 3 13 chr3 130201903 130202288 -29397495 + L1Md_F2 LINE L1 6202 6582 0 2 1578 245 311 0 0 chr3 130203763 130203853 -29395930 + (TA)n Simple_repeat Simple_repeat 2 91 0 2 1578 284 343 46 0 chr3 130206160 130206268 -29393515 - MIR SINE MIR -45 217 105 2 1578 293 185 15 0 chr3 130206759 130206824 -29392959 + (TA)n Simple_repeat Simple_repeat 2 67 0 2 1578 1302 35 0 0 chr3 130206852 130206997 -29392786 + B1_Mus2 SINE Alu 3 147 0 2 1578 180 0 0 0 chr3 130206997 130207017 -29392766 + (CAAAAA)n Simple_repeat Simple_repeat 5 24 0 2 1578 1044 157 144 20 chr3 130207093 130207294 -29392489 - URR1A DNA MER1_type 0 226 1 2 1578 1908 122 96 24 chr3 130208266 130208329 -29391454 - ORR1B2 LTR MaLR -8 359 296 2 1578 4304 42 0 0 chr3 130208329 130208811 -29390972 - L1Md_T LINE L1 0 6582 6101 2 1578 1908 122 96 24 chr3 130208811 130209082 -29390701 - ORR1B2 LTR MaLR -72 295 2 2 1578 207 0 0 0 chr3 130211227 130211250 -29388533 + (CA)n Simple_repeat Simple_repeat 1 23 0 2 1578 688 241 65 70 chr3 130211341 130211555 -29388228 + B3 SINE B2 1 213 -3 2 1578 39545 3 0 0 chr3 130211700 130217081 -29382702 + L1Md_A LINE L1 205 5586 -297 2 1578 9633 2 0 0 chr3 130217081 130218077 -29381706 + L1Md_A LINE L1 5587 6582 0 2 1578 243 0 0 0 chr3 130219121 130219148 -29380635 + (CA)n Simple_repeat Simple_repeat 1 27 0 2 1578 539 273 0 61 chr3 130219364 130219528 -29380255 + RSINE1 SINE B4 12 165 0 2 1578 212 59 0 29 chr3 130220084 130220119 -29379664 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 2 1578 218 180 344 0 chr3 130220892 130220953 -29378830 + B4 SINE B4 1 82 -210 2 1578 264 338 0 0 chr3 130220905 130220973 -29378810 + B3 SINE B2 35 102 -114 2 1578 226 322 0 0 chr3 130222782 130222841 -29376942 + (TGGG)n Simple_repeat Simple_repeat 2 60 0 2 1578 429 140 202 42 chr3 130224442 130224586 -29375197 + ORR1B1 LTR MaLR 1 181 -213 2 1578 1200 123 56 42 chr3 130224586 130224799 -29374984 - L1_Mus4 LINE L1 -68 6568 6353 2 1578 746 305 53 4 chr3 130226651 130226914 -29372869 - MER58B DNA MER1_type 0 341 66 2 1578 231 88 0 0 chr3 130227330 130227364 -29372419 + (TTTTC)n Simple_repeat Simple_repeat 2 35 0 2 1578 252 0 0 0 chr3 130227692 130227720 -29372063 + (T)n Simple_repeat Simple_repeat 1 28 0 2 1578 635 269 80 162 chr3 130228630 130229043 -29370740 - MTE2b LTR MaLR 0 379 1 2 1578 310 264 133 55 chr3 130229043 130229171 -29370612 - MTE2b-int LTR MaLR -16 1564 1427 2 1578 668 189 0 9 chr3 130229346 130229453 -29370330 + PB1D9 SINE Alu 2 107 -13 2 1578 1665 86 32 24 chr3 130230052 130230301 -29369482 - Lx3_Mus LINE L1 -8 7001 6751 2 1578 2000 132 56 51 chr3 130231624 130231998 -29367785 + RMER5 LTR ERV1 133 508 -26 2 1578 1044 81 0 0 chr3 130234450 130234598 -29365185 + (TCC)n Simple_repeat Simple_repeat 1 148 0 2 1578 237 320 87 0 chr3 130234849 130234952 -29364831 + PB1D10 SINE Alu 1 112 -5 2 1578 579 186 42 17 chr3 130234956 130235076 -29364707 + RSINE1 SINE B4 2 124 -41 2 1578 441 0 0 0 chr3 130235076 130235125 -29364658 + (CA)n Simple_repeat Simple_repeat 2 50 0 2 1578 406 269 12 60 chr3 130237236 130237402 -29362381 + RSINE1 SINE B4 3 160 -5 2 1578 180 0 0 0 chr3 130238943 130238963 -29360820 + (TTAA)n Simple_repeat Simple_repeat 1 20 0 2 1578 440 171 21 79 chr3 130238978 130239118 -29360665 - Lx5 LINE L1 -42 7008 6877 2 1578 33 0 0 0 chr3 130239121 130239154 -29360629 + AT_rich Low_complexity Low_complexity 1 33 0 2 1578 226 242 2 16 chr3 130241443 130241506 -29358277 + MIRm SINE MIR 69 139 -137 2 1578 291 54 0 0 chr3 130241552 130241589 -29358194 + (TGAA)n Simple_repeat Simple_repeat 2 38 0 2 1578 5206 244 53 50 chr3 130241779 130242995 -29356788 - L1_Mur3 LINE L1 -25 5855 4659 2 1578 225 0 0 0 chr3 130242995 130243020 -29356763 + (TTG)n Simple_repeat Simple_repeat 1 25 0 2 1578 5206 244 53 50 chr3 130243020 130243406 -29356377 - L1_Mur3 LINE L1 -1222 4658 4249 2 1578 200 118 0 29 chr3 130244090 130244125 -29355658 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 2 1578 183 188 0 0 chr3 130244730 130244778 -29355005 + CT-rich Low_complexity Low_complexity 1 48 0 2 1578 660 255 94 71 chr3 130245432 130245782 -29354001 - Charlie1a DNA MER1_type -181 1274 917 2 1578 228 152 0 70 chr3 130247452 130247523 -29352260 + T-rich Low_complexity Low_complexity 5 70 0 2 1578 999 189 119 5 chr3 130247646 130247848 -29351935 - URR1A DNA MER1_type 0 226 2 2 1578 357 339 172 65 chr3 130247854 130248192 -29351591 - MER21B LTR ERV1 -294 569 196 2 1578 479 338 23 28 chr3 130248555 130248771 -29351012 - MLT1F2 LTR MaLR -49 511 297 2 1578 271 351 71 77 chr3 130248786 130248968 -29350815 - MLT1F2 LTR MaLR -320 228 48 2 1578 34 0 0 0 chr3 130251211 130251245 -29348538 + AT_rich Low_complexity Low_complexity 1 34 0 2 1578 634 246 138 44 chr3 130251448 130251673 -29348110 - MLT2B5 LTR ERVL -52 503 258 2 1578 244 0 27 27 chr3 130253211 130253248 -29346535 + (TG)n Simple_repeat Simple_repeat 1 37 0 3 1578 703 243 29 0 chr3 130253248 130253384 -29346399 - RSINE1 SINE B4 -24 141 2 3 1578 430 275 140 51 chr3 130253563 130253820 -29345963 + B4 SINE B4 2 281 -11 3 1578 228 250 16 16 chr3 130254303 130254364 -29345419 + GA-rich Low_complexity Low_complexity 1 61 0 3 1578 1475 207 89 12 chr3 130255926 130256263 -29343520 - ORR1D2 LTR MaLR -7 363 1 3 1578 379 328 28 33 chr3 130256502 130256682 -29343101 + MIR SINE MIR 35 213 -49 3 1578 207 0 0 0 chr3 130258320 130258343 -29341440 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 3 1578 276 234 31 15 chr3 130258621 130258686 -29341097 - ORR1E LTR MaLR -113 266 201 3 1578 901 283 17 8 chr3 130258669 130258908 -29340875 - ORR1E LTR MaLR -113 246 6 3 1578 227 289 65 13 chr3 130259061 130259138 -29340645 + MIR SINE MIR 65 145 -117 3 1578 1251 283 21 70 chr3 130260483 130261000 -29338783 - Lx9 LINE L1 -184 7460 6969 3 1578 24 0 0 0 chr3 130261436 130261460 -29338323 + AT_rich Low_complexity Low_complexity 1 24 0 3 1578 32 56 0 53 chr3 130262497 130262591 -29337192 + AT_rich Low_complexity Low_complexity 1 89 0 3 1578 882 180 0 0 chr3 130263061 130263189 -29336594 + B1_Mur2 SINE Alu 5 132 -17 3 1578 357 116 0 0 chr3 130263189 130263258 -29336525 + (TTTCG)n Simple_repeat Simple_repeat 2 70 0 3 1578 666 185 0 0 chr3 130263250 130263380 -29336403 + CT-rich Low_complexity Low_complexity 3 132 0 3 1578 203 295 141 42 chr3 130265251 130265442 -29334341 - L2c LINE L2 -92 3295 3086 3 1578 216 67 0 0 chr3 130267376 130267406 -29332377 + (TTGG)n Simple_repeat Simple_repeat 4 33 0 3 1578 186 43 0 0 chr3 130267409 130267432 -29332351 + (TTG)n Simple_repeat Simple_repeat 2 24 0 3 1578 525 256 189 0 chr3 130267958 130268122 -29331661 + B3A SINE B2 2 196 -2 3 1578 200 246 84 28 chr3 130268812 130268883 -29330900 + MIRc SINE MIR 124 198 -70 3 1578 224 263 158 0 chr3 130269948 130270005 -29329778 - ID4_ SINE ID -16 67 2 3 1578 183 100 0 0 chr3 130277062 130277092 -29322691 + (A)n Simple_repeat Simple_repeat 1 30 0 3 1578 35 24 0 0 chr3 130277256 130277298 -29322485 + AT_rich Low_complexity Low_complexity 1 42 0 3 1578 1100 82 0 13 chr3 130279347 130279496 -29320287 + B1_Mus1 SINE Alu 1 147 -1 3 1578 636 260 38 24 chr3 130279683 130279896 -29319887 + B3 SINE B2 1 216 0 3 1578 347 0 23 0 chr3 130281007 130281050 -29318733 + (TG)n Simple_repeat Simple_repeat 2 45 0 3 1578 2383 236 60 8 chr3 130281489 130282018 -29317765 - Lx6 LINE L1 0 7460 6904 3 1578 836 121 14 0 chr3 130282060 130282200 -29317583 + (GAAA)n Simple_repeat Simple_repeat 3 144 0 3 1578 290 87 22 0 chr3 130283840 130283886 -29315897 + (CA)n Simple_repeat Simple_repeat 2 48 0 3 1578 575 51 0 12 chr3 130284487 130284567 -29315216 + (CA)n Simple_repeat Simple_repeat 2 80 0 3 1578 2182 130 97 16 chr3 130284752 130285135 -29314648 - Lx3B LINE L1 -3 6970 6557 3 1579 21 0 0 0 chr3 130288065 130288086 -29311697 + AT_rich Low_complexity Low_complexity 1 21 0 3 1579 569 284 68 10 chr3 130288150 130288342 -29311441 - MIRb SINE MIR -6 262 60 3 1579 282 114 76 0 chr3 130289424 130289503 -29310280 + CT-rich Low_complexity Low_complexity 2 86 0 3 1579 332 203 14 14 chr3 130290205 130290275 -29309508 + ID4_ SINE ID 14 83 0 3 1579 204 167 24 0 chr3 130292097 130292139 -29307644 + (CAAT)n Simple_repeat Simple_repeat 3 45 0 3 1579 453 62 0 0 chr3 130295001 130295066 -29304717 + (TC)n Simple_repeat Simple_repeat 1 65 0 3 1579 271 317 263 13 chr3 130296654 130296878 -29302905 - Lx8 LINE L1 -8 7465 7186 3 1579 823 137 0 0 chr3 130296922 130297053 -29302730 - B1_Mur4 SINE Alu -19 131 1 3 1579 608 180 54 0 chr3 130297241 130297352 -29302431 + PB1D9 SINE Alu 3 119 -1 3 1579 24 53 0 0 chr3 130302230 130302268 -29297515 + AT_rich Low_complexity Low_complexity 1 38 0 3 1579 482 46 15 0 chr3 130303266 130303331 -29296452 + (TTA)n Simple_repeat Simple_repeat 3 68 0 3 1579 6723 102 8 21 chr3 130303334 130304341 -29295442 - Lx3B LINE L1 -1 6972 5979 3 1579 454 245 97 14 chr3 130304891 130305036 -29294747 + RSINE1 SINE B4 3 159 -6 3 1579 199 255 39 0 chr3 130305084 130305135 -29294648 - L4 LINE RTE -470 1559 1507 3 1579 738 202 30 60 chr3 130306704 130306904 -29292879 + B3A SINE B2 1 194 -4 3 1579 205 288 0 17 chr3 130307082 130307142 -29292641 - MIR SINE MIR -158 104 46 3 1579 456 164 0 0 chr3 130307586 130307659 -29292124 + B3A SINE B2 13 85 -113 3 1579 2027 126 3 0 chr3 130307668 130307985 -29291798 - ORR1A3 LTR MaLR -8 318 1 3 1579 198 103 0 0 chr3 130308039 130308068 -29291715 + (CA)n Simple_repeat Simple_repeat 1 29 0 3 1579 398 286 107 25 chr3 130308265 130308387 -29291396 + ID_B1 SINE B4 80 211 -13 3 1579 324 0 0 0 chr3 130308390 130308426 -29291357 + (TG)n Simple_repeat Simple_repeat 2 37 0 3 1579 523 181 28 9 chr3 130308458 130308564 -29291219 - MT2A LTR ERVL -425 108 1 3 1579 296 224 142 2 chr3 130308639 130308759 -29291024 + ORR1D1 LTR MaLR 1 125 -269 3 1579 1215 221 41 32 chr3 130308749 130309073 -29290710 + ORR1D1 LTR MaLR 76 372 -22 3 1579 235 299 0 29 chr3 130309875 130309944 -29289839 + ID4_ SINE ID 2 68 -15 3 1579 423 0 0 0 chr3 130310744 130310791 -29288992 + (TG)n Simple_repeat Simple_repeat 2 48 0 3 1579 819 278 5 5 chr3 130310814 130311009 -29288774 - B4 SINE B4 -4 288 94 3 1579 21 36 0 0 chr3 130311283 130311311 -29288472 + AT_rich Low_complexity Low_complexity 1 28 0 3 1579 25 31 0 0 chr3 130311435 130311467 -29288316 + AT_rich Low_complexity Low_complexity 1 32 0 3 1579 1468 224 71 23 chr3 130313039 130313391 -29286392 - ORR1D2 LTR MaLR -1 369 1 3 1579 380 265 41 0 chr3 130313666 130313764 -29286019 + B1F SINE Alu 46 147 -2 3 1579 1620 191 93 31 chr3 130314025 130314413 -29285370 - MTC LTR MaLR -3 418 7 3 1579 377 372 83 0 chr3 130314671 130314889 -29284894 + Tigger5 DNA MER2_type 8 243 -2163 3 1579 321 265 98 0 chr3 130314884 130314986 -29284797 + Tigger5 DNA MER2_type 2291 2402 -4 3 1579 260 220 0 0 chr3 130314985 130315044 -29284739 - MLT1B LTR MaLR -314 76 18 3 1579 181 220 39 20 chr3 130315092 130315143 -29284640 + MIRb SINE MIR 204 255 -13 3 1579 311 274 0 21 chr3 130315376 130315473 -29284310 - MER58B DNA MER1_type -73 268 174 3 1579 354 252 39 10 chr3 130315595 130315699 -29284084 - MER34A LTR ERV1 -6 565 459 3 1579 232 295 119 88 chr3 130315822 130316015 -29283768 - MER34A LTR ERV1 -347 224 26 3 1579 2755 107 59 2 chr3 130316194 130316599 -29283184 + Lx4A LINE L1 6627 7054 -4 3 1579 281 292 90 0 chr3 130316879 130316968 -29282815 + MTEa LTR MaLR 254 350 -29 3 1579 22 0 0 0 chr3 130318594 130318616 -29281167 + AT_rich Low_complexity Low_complexity 1 22 0 3 1579 491 45 15 0 chr3 130319883 130319949 -29279834 + (CA)n Simple_repeat Simple_repeat 1 67 0 3 1579 216 0 0 0 chr3 130321045 130321069 -29278714 + (TA)n Simple_repeat Simple_repeat 2 25 0 3 1579 913 161 166 0 chr3 130322139 130322332 -29277451 - URR1A DNA MER1_type 0 226 2 3 1579 807 151 26 58 chr3 130322385 130322540 -29277243 + B1_Mur4 SINE Alu 1 150 0 3 1579 251 361 38 8 chr3 130324585 130324716 -29275067 + MIRb SINE MIR 59 193 -75 3 1579 845 310 133 14 chr3 130325924 130326353 -29273430 - MLT1D LTR MaLR -3 502 23 3 1579 254 299 94 18 chr3 130326836 130327006 -29272777 - MER33 DNA MER1_type -133 191 9 3 1579 353 206 127 28 chr3 130327799 130327909 -29271874 + PB1 SINE Alu 1 110 -7 3 1579 284 246 86 14 chr3 130327913 130327983 -29271800 + RSINE1 SINE B4 4 78 -87 3 1579 809 201 39 69 chr3 130331126 130331329 -29268454 + B3A SINE B2 2 198 0 3 1579 1004 208 69 0 chr3 130331364 130331566 -29268217 + B3 SINE B2 1 216 0 3 1579 462 204 23 0 chr3 130335038 130335126 -29264657 - PB1D10 SINE Alu 0 117 28 3 1579 1210 200 5 0 chr3 130335960 130336175 -29263608 + B3 SINE B2 1 216 0 3 1579 22 0 0 0 chr3 130338632 130338654 -29261129 + AT_rich Low_complexity Low_complexity 1 22 0 3 1579 278 298 57 44 chr3 130338655 130338813 -29260970 - MERVL-int LTR ERVL -1098 4387 4228 3 1579 702 267 41 5 chr3 130339537 130339608 -29260175 + B4A SINE B4 7 81 -211 3 1579 363 23 0 0 chr3 130339608 130339652 -29260131 + (CATA)n Simple_repeat Simple_repeat 3 46 0 3 1579 702 267 41 5 chr3 130339652 130339776 -29260007 + B4A SINE B4 82 209 -83 3 1579 609 200 45 58 chr3 130339771 130339925 -29259858 + B3 SINE B2 52 203 -13 3 1579 248 321 50 0 chr3 130340401 130340560 -29259223 - L1MEg LINE L1 -3579 2567 2401 3 1579 266 200 173 39 chr3 130340566 130340670 -29259113 - L1MEg LINE L1 -3890 2256 2139 3 1579 225 261 78 21 chr3 130340953 130341094 -29258689 - L1MEg LINE L1 -4478 1764 1616 3 1579 15720 47 1 14 chr3 130341844 130343814 -29255969 + L1_Mm LINE L1 3413 5357 -526 3 1579 688 208 7 7 chr3 130343889 130344034 -29255749 + B1_Mur4 SINE Alu 5 149 -1 3 1579 2257 226 40 35 chr3 130344046 130344614 -29255169 + Lx7 LINE L1 6731 7301 -395 3 1579 188 86 0 28 chr3 130344669 130344705 -29255078 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 3 1579 686 324 102 76 chr3 130344964 130345819 -29253964 + ERVL-E-int LTR ERVL 4036 4912 -755 3 1579 841 294 7 40 chr3 130345843 130346141 -29253642 + MTEa-int LTR MaLR 1271 1558 -22 3 1579 992 303 52 41 chr3 130346140 130346508 -29253275 + MTEa LTR MaLR 8 379 0 3 1579 239 266 0 72 chr3 130346636 130346705 -29253078 + L1M5 LINE L1 4773 4836 -1310 3 1579 328 338 67 7 chr3 130347921 130348070 -29251713 - MLT1A LTR MaLR -213 161 4 3 1579 1467 49 0 5 chr3 130348530 130348737 -29251046 + L1_Mus1 LINE L1 6373 6567 0 3 1579 276 312 26 43 chr3 130349418 130349585 -29250198 - LTR16E1 LTR ERVL -6 562 368 3 1579 429 280 113 5 chr3 130350383 130350577 -29249206 - ID_B1 SINE B4 -2 222 8 3 1579 970 151 0 0 chr3 130350793 130350939 -29248844 + B1_Mus1 SINE Alu 3 148 0 4 1579 507 45 0 0 chr3 130351043 130351109 -29248674 + (CTG)n Simple_repeat Simple_repeat 1 66 0 4 1579 300 111 0 0 chr3 130351112 130351157 -29248626 + (ATGGTG)n Simple_repeat Simple_repeat 4 48 0 4 1579 1377 266 80 11 chr3 130351877 130352341 -29247442 - MLT1D LTR MaLR -9 496 1 4 1579 663 298 87 24 chr3 130354281 130354570 -29245213 + Lx8 LINE L1 7167 7473 0 4 1579 897 210 80 0 chr3 130354594 130354794 -29244989 + B3 SINE B2 1 216 0 4 1579 231 231 0 0 chr3 130355022 130355074 -29244709 + A-rich Low_complexity Low_complexity 1 52 0 4 1579 189 74 0 0 chr3 130355091 130355118 -29244665 + (CAGA)n Simple_repeat Simple_repeat 2 28 0 4 1579 275 268 14 40 chr3 130355122 130355196 -29244587 - ID4_ SINE ID -4 79 8 4 1579 2424 178 14 1 chr3 130356966 130357653 -29242130 + L1_Mur1 LINE L1 865 1563 -2349 4 1579 9447 141 183 11 chr3 130357639 130360452 -29239331 + Lx2B LINE L1 3683 6999 -1 4 1579 706 145 23 31 chr3 130360519 130360647 -29239136 - Lx2 LINE L1 -249 6748 6622 4 1579 1339 122 55 21 chr3 130360647 130360882 -29238901 + Lx2 LINE L1 6755 6997 0 4 1579 267 275 96 55 chr3 130360882 130360914 -29238869 - Lx3A LINE L1 -362 6619 6585 4 1579 1281 97 11 0 chr3 130360973 130361148 -29238635 + B2_Mm1t SINE B2 1 177 -16 4 1579 270 116 417 10 chr3 130361187 130361283 -29238500 + B2_Mm2 SINE B2 47 181 -14 4 1579 303 263 26 13 chr3 130362159 130362236 -29237547 - ID4 SINE ID -3 80 3 4 1579 444 279 219 0 chr3 130362245 130362482 -29237301 - L1M5 LINE L1 -1099 5047 4759 4 1579 667 279 29 84 chr3 130363385 130363694 -29236089 - B4A SINE B4 0 292 1 4 1579 1098 72 0 0 chr3 130364435 130364573 -29235210 + B1_Mm SINE Alu 1 138 -9 4 1579 213 39 0 0 chr3 130364573 130364599 -29235184 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 4 1579 678 196 22 7 chr3 130364747 130364875 -29234908 + B1_Mur4 SINE Alu 10 140 -10 4 1579 198 0 0 0 chr3 130364875 130364897 -29234886 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 4 1579 858 195 121 0 chr3 130365094 130365284 -29234499 + B3 SINE B2 1 213 -3 4 1579 2468 218 26 28 chr3 130365440 130366010 -29233773 + Lx5 LINE L1 6509 7048 -2 4 1579 576 250 0 0 chr3 130366551 130366679 -29233104 + B1F1 SINE Alu 22 149 0 4 1579 35303 63 3 5 chr3 130367033 130372214 -29227569 + L1Md_F3 LINE L1 418 5585 -298 4 1579 8185 35 19 0 chr3 130372215 130373193 -29226590 + L1Md_F3 LINE L1 5587 6583 -1 4 1579 249 33 0 0 chr3 130373208 130373238 -29226545 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 4 1579 24 67 0 0 chr3 130373269 130373314 -29226469 + AT_rich Low_complexity Low_complexity 1 45 0 4 1579 766 135 14 0 chr3 130373702 130373843 -29225940 + (GA)n Simple_repeat Simple_repeat 2 144 0 4 1579 1856 186 69 3 chr3 130374790 130375168 -29224615 - MTC LTR MaLR -17 404 2 4 1579 2826 182 141 75 chr3 130375175 130375359 -29224424 - MTC-int LTR MaLR -6 1252 1069 4 1579 993 169 158 0 chr3 130375359 130375536 -29224247 + B3 SINE B2 2 206 -10 4 1579 2826 182 141 75 chr3 130375536 130375592 -29224191 - MTC-int LTR MaLR -190 1068 1058 4 1579 1386 81 16 16 chr3 130375592 130375781 -29224002 + B2_Mm2 SINE B2 2 190 -5 4 1579 2826 182 141 75 chr3 130375781 130375882 -29223901 - MTC-int LTR MaLR -201 1057 944 4 1579 216 0 0 0 chr3 130375882 130375906 -29223877 + (CAAAT)n Simple_repeat Simple_repeat 1 24 0 4 1579 2826 191 140 96 chr3 130375906 130376655 -29223128 - MTC-int LTR MaLR -315 943 1 4 1579 2506 129 82 3 chr3 130376658 130377047 -29222736 - MTC LTR MaLR -1 420 1 4 1579 405 0 0 0 chr3 130377126 130377171 -29222612 + (TG)n Simple_repeat Simple_repeat 2 46 0 4 1579 188 34 0 33 chr3 130377999 130378029 -29221754 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 4 1579 396 0 0 0 chr3 130378244 130378288 -29221495 + (TG)n Simple_repeat Simple_repeat 2 45 0 4 1579 472 351 18 12 chr3 130378289 130378456 -29221327 - B3A SINE B2 -30 168 1 4 1579 663 137 0 0 chr3 130379076 130379200 -29220583 + (TG)n Simple_repeat Simple_repeat 2 125 0 4 1579 207 0 0 0 chr3 130379291 130379314 -29220469 + (TC)n Simple_repeat Simple_repeat 1 23 0 4 1579 959 68 0 0 chr3 130379321 130379453 -29220330 - B1_Mus2 SINE Alu -2 145 14 4 1579 230 250 50 0 chr3 130379359 130379479 -29220304 - MTEa-int LTR MaLR -755 754 629 4 1579 2533 42 3 9 chr3 130379640 130379955 -29219828 + L1Md_F2 LINE L1 6270 6582 0 4 1579 365 241 24 18 chr3 130380001 130380170 -29219613 + CT-rich Low_complexity Low_complexity 5 174 0 4 1579 22 0 0 0 chr3 130380331 130380353 -29219430 + AT_rich Low_complexity Low_complexity 1 22 0 4 1579 414 274 79 87 chr3 130380554 130380928 -29218855 - MTEa LTR MaLR 0 379 3 4 1579 198 218 55 0 chr3 130381158 130381213 -29218570 + MIRb SINE MIR 203 260 -8 4 1579 297 0 0 0 chr3 130382036 130382069 -29217714 + (TC)n Simple_repeat Simple_repeat 2 34 0 4 1579 193 350 24 36 chr3 130382389 130382555 -29217228 + L2a LINE L2 1436 1599 -1820 4 1579 369 328 106 24 chr3 130382584 130382999 -29216784 + L2a LINE L2 1740 2188 -1231 4 1579 202 343 120 21 chr3 130383097 130383380 -29216403 + L2a LINE L2 2752 3062 -357 4 1579 823 248 68 19 chr3 130383669 130383932 -29215851 - B4 SINE B4 -15 277 2 4 1579 231 36 0 0 chr3 130383953 130383981 -29215802 + (TG)n Simple_repeat Simple_repeat 1 28 0 4 1579 447 19 0 0 chr3 130385877 130385929 -29213854 + (TG)n Simple_repeat Simple_repeat 2 53 0 4 1579 229 330 88 0 chr3 130386593 130386684 -29213099 + L2a LINE L2 3288 3386 -40 4 1579 2860 75 19 17 chr3 130386897 130387307 -29212476 + RLTR9F LTR ERVK 1 411 -4 4 1579 583 262 152 61 chr3 130387512 130387874 -29211909 + LTR40b LTR ERVL 37 431 -31 4 1579 468 0 0 0 chr3 130389634 130389686 -29210097 + (TG)n Simple_repeat Simple_repeat 2 53 0 4 1579 793 90 153 16 chr3 130389888 130390012 -29209771 + B1_Mus1 SINE Alu 2 142 -6 4 1579 513 71 0 0 chr3 130390014 130390084 -29209699 + (TAGA)n Simple_repeat Simple_repeat 1 70 0 4 1579 839 170 7 7 chr3 130390094 130390242 -29209541 + B1_Mur2 SINE Alu 1 148 -1 4 1579 206 324 204 5 chr3 130390325 130390536 -29209247 + MIR SINE MIR 10 262 0 4 1579 1980 144 3 44 chr3 130390556 130390638 -29209145 + MTC LTR MaLR 1 77 -344 4 1579 1444 56 17 0 chr3 130390638 130390816 -29208967 + B2_Mm2 SINE B2 1 181 -14 4 1579 912 67 0 0 chr3 130390816 130390936 -29208847 + (GAAAA)n Simple_repeat Simple_repeat 2 121 0 4 1579 1980 158 5 86 chr3 130390936 130391335 -29208448 + MTC LTR MaLR 78 397 -3 4 1579 1339 129 10 0 chr3 130391841 130392034 -29207749 + B2_Mm2 SINE B2 1 195 0 4 1579 209 234 21 0 chr3 130393030 130393077 -29206706 + (CATATA)n Simple_repeat Simple_repeat 3 50 0 4 1579 968 126 63 37 chr3 130393712 130393902 -29205881 + B2_Mm2 SINE B2 1 195 0 4 1579 292 344 112 13 chr3 130393940 130394173 -29205610 - MLT1G3-int LTR MaLR -1019 390 135 4 1579 409 340 86 65 chr3 130394333 130394832 -29204951 - MLT1G3 LTR MaLR -21 528 16 4 1579 776 156 0 33 chr3 130395323 130395475 -29204308 - URR1B DNA MER1_type 0 225 79 4 1579 398 312 18 0 chr3 130395493 130395605 -29204178 - MIRb SINE MIR -99 169 56 4 1579 511 86 0 0 chr3 130395689 130395759 -29204024 + B3 SINE B2 1 70 -146 4 1579 467 218 26 60 chr3 130396169 130396286 -29203497 - PB1D10 SINE Alu -4 113 1 4 1579 421 268 128 0 chr3 130396331 130396495 -29203288 + MTE2b LTR MaLR 5 189 -190 4 1579 29 28 0 0 chr3 130397010 130397046 -29202737 + AT_rich Low_complexity Low_complexity 1 36 0 4 1579 290 167 0 29 chr3 130398122 130398138 -29201645 + polypurine Low_complexity Low_complexity 3 16 0 4 1579 1259 34 0 0 chr3 130398138 130398286 -29201497 + B1_Mus1 SINE Alu 1 148 0 4 1579 290 167 0 29 chr3 130398286 130398337 -29201446 + polypurine Low_complexity Low_complexity 17 67 0 4 1579 674 167 72 7 chr3 130398671 130398810 -29200973 + B1_Mur1 SINE Alu 2 149 0 4 1579 882 215 54 20 chr3 130400816 130401020 -29198763 + B3 SINE B2 1 211 -5 4 1579 413 299 63 25 chr3 130401241 130401399 -29198384 + RSINE1 SINE B4 2 165 0 4 1579 323 177 37 25 chr3 130401575 130401656 -29198127 + ID4 SINE ID 2 83 0 4 1579 370 320 67 0 chr3 130401711 130401861 -29197922 - RSINE1 SINE B4 -3 162 3 4 1579 268 226 245 0 chr3 130403082 130403184 -29196599 - B1F2 SINE Alu -6 143 17 4 1579 464 218 391 0 chr3 130403560 130403826 -29195957 + ORR1D2 LTR MaLR 1 370 0 4 1579 1263 183 135 7 chr3 130404073 130404370 -29195413 + Lx6 LINE L1 7125 7459 -1 4 1579 1431 214 68 32 chr3 130404406 130404744 -29195039 + Lx5 LINE L1 6695 7044 -6 4 1579 594 157 70 16 chr3 130404767 130404896 -29194887 + B1_Mur4 SINE Alu 15 150 0 4 1579 1643 192 83 18 chr3 130405256 130405643 -29194140 + MTC LTR MaLR 1 412 -9 4 1579 279 281 73 16 chr3 130406596 130406719 -29193064 - L2a LINE L2 -2 3424 3295 4 1579 1245 102 48 5 chr3 130406890 130407077 -29192706 + B2_Mm2 SINE B2 1 195 0 4 1579 267 283 152 0 chr3 130407089 130407181 -29192602 + PB1D9 SINE Alu 2 107 -13 4 1579 250 312 26 0 chr3 130407470 130407547 -29192236 - RSINE1 SINE B4 -84 81 3 4 1579 23 0 0 0 chr3 130407681 130407704 -29192079 + AT_rich Low_complexity Low_complexity 1 23 0 4 1579 501 258 24 0 chr3 130407752 130407876 -29191907 + RSINE1 SINE B4 2 128 -37 4 1579 258 32 0 0 chr3 130407893 130407924 -29191859 + (CA)n Simple_repeat Simple_repeat 2 32 0 4 1579 1354 69 17 0 chr3 130409074 130409249 -29190534 + B2_Mm1t SINE B2 2 179 -14 4 1579 207 0 0 0 chr3 130409349 130409372 -29190411 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 4 1579 1128 75 0 7 chr3 130409382 130409530 -29190253 + B1_Mus1 SINE Alu 2 148 0 4 1579 2140 149 19 21 chr3 130409610 130409987 -29189796 + ORR1B1 LTR MaLR 1 376 -18 4 1579 645 178 16 0 chr3 130410060 130410189 -29189594 + RCHARR1 DNA MER1_type 675 805 -169 4 1579 760 195 25 19 chr3 130410198 130410360 -29189423 + B2_Mm2 SINE B2 1 163 -32 4 1579 418 307 12 12 chr3 130410377 130410542 -29189241 + RCHARR1 DNA MER1_type 810 974 0 4 1579 349 131 38 56 chr3 130410864 130410956 -29188827 + ORR1B1 LTR MaLR 135 286 -108 4 1579 28 29 0 0 chr3 130412451 130412486 -29187297 + AT_rich Low_complexity Low_complexity 1 35 0 4 1579 26 30 0 0 chr3 130412838 130412871 -29186912 + AT_rich Low_complexity Low_complexity 1 33 0 4 1579 197 261 22 0 chr3 130412953 130412999 -29186784 + L2 LINE L2 2537 2583 -836 5 1579 757 329 24 30 chr3 130413044 130413414 -29186369 + ERVL-E-int LTR ERVL 4847 5214 -453 5 1579 1143 83 0 0 chr3 130413513 130413657 -29186126 + B1_Mus1 SINE Alu 2 145 -3 5 1579 23 0 0 0 chr3 130413657 130413680 -29186103 + AT_rich Low_complexity Low_complexity 1 23 0 5 1579 294 29 0 0 chr3 130414341 130414376 -29185407 + (TATAG)n Simple_repeat Simple_repeat 1 35 0 5 1579 228 135 0 0 chr3 130415294 130415331 -29184452 + (TTG)n Simple_repeat Simple_repeat 2 38 0 5 1579 324 59 57 34 chr3 130415376 130415390 -29184393 + (TTTTTG)n Simple_repeat Simple_repeat 5 18 0 5 1579 270 0 0 0 chr3 130415390 130415420 -29184363 + (TGG)n Simple_repeat Simple_repeat 3 32 0 5 1579 324 59 57 34 chr3 130415420 130415493 -29184290 + (TTTTTG)n Simple_repeat Simple_repeat 2 76 0 5 1579 469 150 298 9 chr3 130415493 130415607 -29184176 - B1_Mm SINE Alu 0 147 1 5 1579 198 0 0 0 chr3 130415621 130415643 -29184140 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 5 1579 21 0 0 0 chr3 130416260 130416281 -29183502 + AT_rich Low_complexity Low_complexity 1 21 0 5 1579 438 219 160 16 chr3 130416281 130416406 -29183377 + B1_Mus1 SINE Alu 6 148 0 5 197 1222 41 7 0 chr3 130416498 130416644 -29183139 + B1_Mm SINE Alu 1 147 0 5 1580 1087 68 154 0 chr3 130416672 130416834 -29182949 + B2_Mm2 SINE B2 2 188 -7 5 1580 222 208 38 0 chr3 130416852 130416905 -29182878 + (TA)n Simple_repeat Simple_repeat 1 55 0 5 1580 1103 115 63 6 chr3 130417175 130417350 -29182433 - B2_Mm2 SINE B2 -9 186 2 5 1580 397 261 96 0 chr3 130417384 130417499 -29182284 - B3 SINE B2 -90 126 1 5 1580 282 340 9 46 chr3 130417510 130417618 -29182165 - PB1D10 SINE Alu -7 110 7 5 1580 223 191 0 0 chr3 130417629 130417671 -29182112 + A-rich Low_complexity Low_complexity 1 42 0 5 1580 953 130 14 0 chr3 130417756 130417902 -29181881 - B1_Mur4 SINE Alu 0 150 3 5 1580 405 260 0 50 chr3 130418792 130418893 -29180890 + RSINE1 SINE B4 70 165 0 5 1580 405 0 0 0 chr3 130419719 130419764 -29180019 + (TG)n Simple_repeat Simple_repeat 2 46 0 5 1580 960 137 7 14 chr3 130420146 130420294 -29179489 - B1_Mus2 SINE Alu 0 147 1 5 1580 348 234 0 0 chr3 130420740 130420834 -29178949 + CT-rich Low_complexity Low_complexity 1 94 0 5 1580 1444 55 49 0 chr3 130420925 130420944 -29178839 - B2_Mm1a SINE B2 -1 192 174 5 1580 270 0 0 0 chr3 130420944 130420974 -29178809 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 5 1580 1444 55 49 0 chr3 130420974 130421137 -29178646 - B2_Mm1a SINE B2 -20 173 2 5 1580 401 274 179 0 chr3 130421312 130421429 -29178354 - B3 SINE B2 -8 208 71 5 1580 200 295 16 0 chr3 130421992 130422053 -29177730 + L2b LINE L2 3312 3373 -2 5 1580 182 258 101 0 chr3 130422916 130423005 -29176778 - MIRm SINE MIR -164 112 15 5 1580 196 304 110 45 chr3 130424181 130424336 -29175447 + L2a LINE L2 3218 3382 -44 5 1580 1054 130 192 0 chr3 130424787 130424964 -29174819 + B3 SINE B2 4 214 -2 5 1580 1396 71 16 5 chr3 130424987 130425171 -29174612 + B2_Mm2 SINE B2 1 186 -9 5 1580 263 281 32 40 chr3 130425194 130425320 -29174463 + Charlie2b DNA MER1_type 2648 2772 -10 5 1580 598 277 50 0 chr3 130425534 130425693 -29174090 + MER58A DNA MER1_type 4 170 -54 5 1580 183 156 0 0 chr3 130426361 130426393 -29173390 + (TG)n Simple_repeat Simple_repeat 1 32 0 5 1580 241 316 70 9 chr3 130426629 130426744 -29173039 + MLT1A0 LTR MaLR 4 125 -240 5 1580 421 284 47 47 chr3 130427044 130427192 -29172591 + B1_Mur1 SINE Alu 1 148 -1 5 1580 21 0 0 0 chr3 130428351 130428372 -29171411 + AT_rich Low_complexity Low_complexity 1 21 0 5 1580 271 288 219 0 chr3 130428806 130428966 -29170817 - B4A SINE B4 -55 237 43 5 1580 213 290 157 20 chr3 130429062 130429164 -29170619 + PB1D10 SINE Alu 1 116 -1 5 1580 664 189 240 18 chr3 130430066 130430370 -29169413 + MTD LTR MaLR 1 412 -7 5 1580 739 56 0 61 chr3 130430557 130430672 -29169111 - B1_Mm SINE Alu 0 147 40 5 1580 189 209 91 7 chr3 130433664 130433733 -29166050 + MIR SINE MIR 21 105 -163 5 1580 1241 27 0 26 chr3 130434305 130434457 -29165326 + B1_Mus1 SINE Alu 1 148 0 5 1580 357 62 0 0 chr3 130434457 130434505 -29165278 + (A)n Simple_repeat Simple_repeat 1 48 0 5 1580 221 167 0 0 chr3 130434900 130434936 -29164847 + B1F SINE Alu 58 93 -56 5 1580 560 161 237 0 chr3 130434983 130435101 -29164682 + B1_Mur4 SINE Alu 5 150 0 5 1580 21 36 0 0 chr3 130435107 130435135 -29164648 + AT_rich Low_complexity Low_complexity 1 28 0 5 1580 568 235 173 0 chr3 130435395 130435574 -29164209 + B3 SINE B2 2 211 -5 5 1580 244 250 80 0 chr3 130435591 130435691 -29164092 + L1M5 LINE L1 4243 4350 -1796 5 1580 533 80 295 0 chr3 130435738 130435850 -29163933 + URR1A DNA MER1_type 82 226 0 5 1580 370 361 26 56 chr3 130435860 130436092 -29163691 + L1M5 LINE L1 4379 4603 -1543 5 1580 1031 90 13 34 chr3 130436100 130436249 -29163534 + B1_Mus2 SINE Alu 2 147 0 5 1580 198 0 0 0 chr3 130436249 130436271 -29163512 + (A)n Simple_repeat Simple_repeat 1 22 0 5 1580 512 267 0 17 chr3 130436671 130436789 -29162994 - PB1D10 SINE Alu 0 117 2 5 1580 502 274 40 93 chr3 130436789 130436860 -29162923 + L1MA4A LINE L1 5723 5782 -521 5 1580 243 0 0 0 chr3 130436860 130436887 -29162896 + (CA)n Simple_repeat Simple_repeat 1 27 0 5 1580 502 274 40 93 chr3 130436887 130437033 -29162750 + L1MA4A LINE L1 5783 5930 -373 5 1580 713 163 7 0 chr3 130437345 130437480 -29162303 + CT-rich Low_complexity Low_complexity 1 136 0 5 1580 1210 68 0 0 chr3 130437480 130437628 -29162155 - B1_Mus1 SINE Alu 0 148 1 5 1580 1153 289 80 16 chr3 130437678 130438166 -29161617 - RMER5 LTR ERV1 0 534 16 5 1580 728 189 7 34 chr3 130438188 130438336 -29161447 + B1_Mur3 SINE Alu 1 144 -5 5 1580 648 0 0 0 chr3 130438342 130438414 -29161369 + (GGAA)n Simple_repeat Simple_repeat 3 74 0 5 1580 1389 58 6 0 chr3 130438414 130438586 -29161197 + B2_Mm1a SINE B2 2 174 -19 5 1580 279 0 0 0 chr3 130438601 130438632 -29161151 + (GGAA)n Simple_repeat Simple_repeat 3 33 0 5 1580 201 231 0 0 chr3 130439126 130439165 -29160618 + G-rich Low_complexity Low_complexity 2 40 0 5 1580 318 244 0 0 chr3 130439325 130439407 -29160376 + (TA)n Simple_repeat Simple_repeat 1 82 0 5 1580 183 271 201 28 chr3 130439738 130439882 -29159901 + MIRb SINE MIR 78 246 -22 5 1580 24 0 0 0 chr3 130440829 130440853 -29158930 + AT_rich Low_complexity Low_complexity 1 24 0 5 1580 1374 242 56 18 chr3 130441758 130441844 -29157939 + MTD LTR MaLR 1 86 -333 5 1580 3525 31 2 5 chr3 130441844 130442265 -29157518 + L1Md_F2 LINE L1 6163 6582 0 5 1580 1374 242 56 18 chr3 130442265 130442372 -29157411 + MTD LTR MaLR 87 198 -221 5 1580 306 0 0 0 chr3 130442372 130442406 -29157377 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 5 1580 1374 242 56 18 chr3 130442406 130442607 -29157176 + MTD LTR MaLR 199 410 -9 5 1580 721 276 26 22 chr3 130442611 130442841 -29156942 - MTE2b LTR MaLR -133 246 16 5 1580 493 42 0 27 chr3 130442879 130442953 -29156830 + (TAGA)n Simple_repeat Simple_repeat 2 73 0 5 1580 429 20 0 0 chr3 130442979 130443029 -29156754 + (CA)n Simple_repeat Simple_repeat 2 51 0 5 1580 848 98 0 0 chr3 130443029 130443152 -29156631 - B2_Mm2 SINE B2 -71 124 2 5 1580 22 0 0 54 chr3 130443152 130443169 -29156614 + AT_rich Low_complexity Low_complexity 1 17 0 5 1580 1169 75 0 7 chr3 130443169 130443316 -29156467 + B1_Mus2 SINE Alu 1 146 -1 5 1580 22 0 0 54 chr3 130443316 130443335 -29156448 + AT_rich Low_complexity Low_complexity 1 18 0 5 1580 325 243 43 0 chr3 130443349 130443419 -29156364 - RSINE1 SINE B4 -35 130 58 5 1580 950 167 7 0 chr3 130443646 130443790 -29155993 - B1_Mur1 SINE Alu 0 149 5 5 1580 330 179 115 62 chr3 130443818 130443931 -29155852 + ID_B1 SINE B4 80 198 -26 5 1580 529 76 0 140 chr3 130443832 130443939 -29155844 + B1_Mur4 SINE Alu 9 100 -50 5 1580 330 223 105 11 chr3 130444643 130444738 -29155045 - B1F SINE Alu -11 138 35 5 1580 578 169 24 41 chr3 130444796 130444919 -29154864 - RLTR19 LTR ERVK -1 498 378 5 1580 380 213 23 76 chr3 130445170 130445302 -29154481 - B1F SINE Alu -20 129 5 5 1580 315 241 262 0 chr3 130445322 130445509 -29154274 - HAL1 LINE L1 -823 1684 1449 5 1580 418 327 103 30 chr3 130445566 130445992 -29153791 - HAL1 LINE L1 -1400 1107 651 5 1580 3366 136 57 29 chr3 130445993 130446658 -29153125 + RLTR22_Mur LTR ERVK 1 684 -1164 5 1580 200 34 0 33 chr3 130446663 130446693 -29153090 + (AGGGGG)n Simple_repeat Simple_repeat 5 33 0 5 1580 686 12 0 12 chr3 130446696 130446780 -29153003 + (GGAGA)n Simple_repeat Simple_repeat 4 86 0 5 1580 3759 135 101 64 chr3 130446902 130447099 -29152684 + RLTR22_Mur LTR ERVK 1017 1244 -604 5 1580 1330 96 37 0 chr3 130447099 130447287 -29152496 - B2_Mm2 SINE B2 0 195 1 5 1580 3759 135 101 64 chr3 130447287 130447614 -29152169 + RLTR22_Mur LTR ERVK 1245 1562 -286 5 1580 1126 74 0 7 chr3 130447614 130447763 -29152020 + B1_Mus1 SINE Alu 1 148 0 5 1580 3759 135 101 64 chr3 130447763 130448036 -29151747 + RLTR22_Mur LTR ERVK 1563 1845 -3 5 1580 243 358 72 41 chr3 130448041 130448236 -29151547 - HAL1 LINE L1 -1860 647 447 5 1580 861 273 130 0 chr3 130448726 130449026 -29150757 + MTE2b LTR MaLR 2 340 -39 5 1580 502 239 152 127 chr3 130451005 130451072 -29148711 - B4 SINE B4 0 292 219 5 1580 653 24 12 0 chr3 130451072 130451155 -29148628 + (TTCC)n Simple_repeat Simple_repeat 1 84 0 5 1580 686 190 34 34 chr3 130451156 130451168 -29148615 - B1F2 SINE Alu -1 148 140 5 1580 195 42 0 0 chr3 130451168 130451192 -29148591 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 5 1580 686 190 34 34 chr3 130451192 130451326 -29148457 - B1F2 SINE Alu -10 139 2 5 1580 502 239 152 127 chr3 130451326 130451539 -29148244 - B4 SINE B4 -74 218 3 5 1580 1172 88 0 0 chr3 130451676 130451824 -29147959 - B1_Mus1 SINE Alu 0 148 1 5 1580 25 0 0 0 chr3 130451828 130451853 -29147930 + AT_rich Low_complexity Low_complexity 1 25 0 5 1580 7305 103 12 13 chr3 130452671 130453787 -29145996 - RLTR13D3 LTR ERVK 0 1114 1 5 1580 618 151 78 23 chr3 130454012 130454141 -29145642 + ORR1D1 LTR MaLR 1 136 -238 5 1580 1276 165 4 43 chr3 130455032 130455266 -29144517 + URR1B DNA MER1_type 1 225 0 6 1580 1180 41 0 7 chr3 130455276 130455424 -29144359 - B1_Mus1 SINE Alu 0 148 2 6 1580 369 319 91 11 chr3 130455435 130455622 -29144161 + MLT1D LTR MaLR 304 505 0 6 1580 214 387 43 7 chr3 130455869 130456007 -29143776 - MIR SINE MIR -112 150 8 6 1580 294 50 0 0 chr3 130456718 130456758 -29143025 + (CAA)n Simple_repeat Simple_repeat 1 40 0 6 1580 394 258 0 0 chr3 130457107 130457204 -29142579 + PB1D10 SINE Alu 1 97 -20 6 1580 249 208 0 19 chr3 130457207 130457261 -29142522 + GA-rich Low_complexity Low_complexity 2 54 0 6 1580 213 39 0 0 chr3 130457404 130457430 -29142353 + (TA)n Simple_repeat Simple_repeat 1 26 0 6 1580 651 183 0 91 chr3 130458545 130458659 -29141124 - B1F2 SINE Alu -29 120 18 6 1580 2119 198 10 216 chr3 130458659 130459426 -29140357 + RMER19C LTR ERVK 1 609 -2 6 1580 651 183 0 91 chr3 130459426 130459443 -29140340 - B1F2 SINE Alu -132 17 1 6 1580 192 97 0 0 chr3 130460173 130460204 -29139579 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 6 1580 180 0 0 0 chr3 130462337 130462357 -29137426 + (GGA)n Simple_repeat Simple_repeat 1 20 0 6 1580 338 339 60 16 chr3 130462493 130462676 -29137107 + Charlie5 DNA MER1_type 9 199 -2425 6 1580 387 312 50 23 chr3 130462677 130462897 -29136886 + Charlie5 DNA MER1_type 2355 2580 -44 6 1580 229 237 119 116 chr3 130462901 130463008 -29136775 + B1F SINE Alu 6 114 -6 6 1580 261 109 0 0 chr3 130463110 130463156 -29136627 + (TTTA)n Simple_repeat Simple_repeat 3 48 0 6 1580 578 80 389 7 chr3 130463157 130463296 -29136487 - B2_Mm2 SINE B2 -2 193 2 6 1580 183 184 0 0 chr3 130463925 130463963 -29135820 + A-rich Low_complexity Low_complexity 1 38 0 6 1580 189 94 0 0 chr3 130465019 130465051 -29134732 + (A)n Simple_repeat Simple_repeat 1 32 0 6 1580 564 291 152 27 chr3 130465724 130465810 -29133973 - L1MC1 LINE L1 0 6333 6241 6 1580 261 0 0 0 chr3 130465810 130465839 -29133944 + (CA)n Simple_repeat Simple_repeat 2 30 0 6 1580 564 291 152 27 chr3 130465839 130466126 -29133657 - L1MC1 LINE L1 -93 6240 5914 6 1580 2903 314 72 33 chr3 130466194 130467551 -29132232 + Lx8 LINE L1 6052 7461 -12 6 1580 365 216 125 0 chr3 130467746 130467834 -29131949 - PB1 SINE Alu -2 125 27 6 1580 444 19 0 0 chr3 130468369 130468422 -29131361 + (TG)n Simple_repeat Simple_repeat 2 54 0 6 1580 533 250 114 0 chr3 130468435 130468567 -29131216 - RSINE1 SINE B4 -15 150 4 6 1580 474 259 0 9 chr3 130468916 130469029 -29130754 + PB1D10 SINE Alu 1 112 -5 6 1580 271 382 22 0 chr3 130469199 130469335 -29130448 - MIR SINE MIR -3 259 121 6 1580 10254 69 19 18 chr3 130469337 130470836 -29128947 + Lx3_Mus LINE L1 5511 7009 0 6 1580 271 279 35 11 chr3 130471246 130471333 -29128450 + MTE2b LTR MaLR 6 94 -285 6 1580 746 85 68 0 chr3 130471424 130471476 -29128307 + RMER6A LTR ERVK 1 53 -703 6 1580 279 0 0 0 chr3 130471476 130471507 -29128276 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 6 1580 746 85 68 0 chr3 130471507 130471572 -29128211 + RMER6A LTR ERVK 54 125 -631 6 1580 1185 131 44 0 chr3 130471568 130471774 -29128009 + RMER6A LTR ERVK 542 756 0 6 1580 756 266 45 5 chr3 130471779 130471979 -29127804 + MTE2b LTR MaLR 172 379 0 6 1580 277 298 123 8 chr3 130472450 130472572 -29127211 + LFSINE_Vert SINE SINE 48 183 -276 6 1580 383 263 39 71 chr3 130472785 130472870 -29126913 + B1F SINE Alu 11 96 -53 6 1580 2559 173 23 143 chr3 130472870 130473564 -29126219 + RMER19C LTR ERVK 1 611 0 6 1580 383 263 39 71 chr3 130473564 130473605 -29126178 + B1F SINE Alu 97 133 -16 6 1580 280 333 37 19 chr3 130474238 130474400 -29125383 + MIRb SINE MIR 36 200 -68 6 1580 5062 107 28 1 chr3 130474635 130475353 -29124430 + RMER19A LTR ERVK 1 737 0 6 1580 212 86 29 0 chr3 130475354 130475389 -29124394 + (TTCC)n Simple_repeat Simple_repeat 4 39 0 6 1580 216 130 0 0 chr3 130475411 130475457 -29124326 + (TC)n Simple_repeat Simple_repeat 1 46 0 6 1580 431 207 14 32 chr3 130475988 130476108 -29123675 - B1_Mus2 SINE Alu -1 146 9 6 1580 372 94 0 0 chr3 130476134 130476187 -29123596 + (TCTA)n Simple_repeat Simple_repeat 1 53 0 6 1580 713 79 10 0 chr3 130476211 130476312 -29123471 - B2_Mm1t SINE B2 -91 102 1 6 1580 36198 34 0 0 chr3 130477228 130482655 -29117128 + L1Md_T LINE L1 66 5589 -297 6 1580 9194 4 0 0 chr3 130482655 130483651 -29116132 + L1Md_T LINE L1 5590 6585 0 6 1580 970 103 58 6 chr3 130484458 130484614 -29115169 - B2_Mm2 SINE B2 -30 165 2 6 1580 317 222 0 0 chr3 130484738 130484801 -29114982 + ID2 SINE ID 11 73 -10 6 1580 634 218 0 29 chr3 130485104 130485241 -29114542 + B1_Mur1 SINE Alu 1 133 -16 6 1580 277 309 100 0 chr3 130486838 130486948 -29112835 - MER104 DNA Tc2 -21 160 40 6 1580 803 206 71 52 chr3 130487152 130487362 -29112421 + B3 SINE B2 2 215 -1 6 1580 318 81 31 31 chr3 130488113 130488177 -29111606 + (GGAGA)n Simple_repeat Simple_repeat 5 68 0 6 1580 235 158 49 0 chr3 130488175 130488257 -29111526 + (CAGA)n Simple_repeat Simple_repeat 3 88 0 6 1580 5215 185 67 44 chr3 130488419 130489522 -29110261 - Lx7 LINE L1 0 7696 6569 6 1580 518 43 14 0 chr3 130489522 130489591 -29110192 + (CA)n Simple_repeat Simple_repeat 2 71 0 6 1580 417 261 15 31 chr3 130489662 130489806 -29109977 + L1ME1 LINE L1 6041 6184 0 6 1580 1596 52 5 0 chr3 130490551 130490762 -29109021 + MTB LTR MaLR 189 400 0 6 1580 246 205 0 35 chr3 130490765 130490851 -29108932 + (TATATG)n Simple_repeat Simple_repeat 3 85 0 6 1580 229 160 40 0 chr3 130491183 130491233 -29108550 + (TTG)n Simple_repeat Simple_repeat 2 53 0 6 1580 246 62 0 0 chr3 130491238 130491270 -29108513 + (T)n Simple_repeat Simple_repeat 1 32 0 6 1580 549 272 52 6 chr3 130491388 130491562 -29108221 + MER31B LTR ERV1 1 182 -284 6 1580 901 142 177 24 chr3 130492141 130492350 -29107433 - ORR1D2 LTR MaLR -2 368 128 6 1580 1572 163 19 138 chr3 130492350 130492830 -29106953 + ORR1B2 LTR MaLR 1 378 0 6 1580 615 207 28 21 chr3 130492830 130492954 -29106829 - ORR1D2 LTR MaLR -244 126 2 6 1580 769 203 0 0 chr3 130493364 130493502 -29106281 - B1_Mur2 SINE Alu -7 142 5 6 1580 238 318 82 0 chr3 130493904 130493989 -29105794 + MLT1H1 LTR MaLR 37 128 -427 6 1580 1371 85 21 0 chr3 130494486 130494675 -29105108 - B2_Mm2 SINE B2 -2 193 1 6 1580 36 62 0 0 chr3 130494803 130494867 -29104916 + AT_rich Low_complexity Low_complexity 1 64 0 6 1580 841 193 0 14 chr3 130494871 130495018 -29104765 - B1_Mur4 SINE Alu -5 145 1 6 1580 637 294 69 10 chr3 130495019 130495222 -29104561 - ID_B1 SINE B4 -1 223 9 6 1580 189 139 0 0 chr3 130497089 130497132 -29102651 + (G)n Simple_repeat Simple_repeat 1 43 0 6 1580 925 119 27 54 chr3 130497144 130497330 -29102453 + B2_Mm2 SINE B2 6 186 -9 6 1580 222 268 18 0 chr3 130497348 130497404 -29102379 + G-rich Low_complexity Low_complexity 3 59 0 6 1580 289 269 47 51 chr3 130497436 130497737 -29102046 - RLTR11A LTR ERVK -45 314 48 6 1580 813 107 76 70 chr3 130498067 130498238 -29101545 + URR1A DNA MER1_type 54 225 -1 6 1580 2147 151 8 145 chr3 130498260 130498757 -29101026 + RLTR23 LTR ERV1 2 430 0 6 1580 405 208 0 0 chr3 130500002 130500079 -29099704 - ID_B1 SINE B4 -56 168 92 1 1580 256 306 265 3 chr3 130500305 130500633 -29099150 + Kanga1 DNA Tc2 1143 1556 -189 2 1580 641 243 81 27 chr3 130500774 130500960 -29098823 - B3 SINE B2 0 216 21 3 1580 276 239 40 53 chr3 130500946 130501021 -29098762 - B3A SINE B2 -124 74 1 4 1580 2221 88 69 0 chr3 130501043 130501349 -29098434 + ORR1A2 LTR MaLR 1 327 0 5 1580 581 133 90 45 chr3 130501893 130502027 -29097756 + URR1B DNA MER1_type 86 225 0 6 1580 21 0 0 0 chr3 130503312 130503333 -29096450 + AT_rich Low_complexity Low_complexity 1 21 0 7 1580 660 188 0 0 chr3 130503459 130503800 -29095983 + GA-rich Low_complexity Low_complexity 1 341 0 8 1580 1302 95 122 24 chr3 130503981 130504186 -29095597 + URR1A DNA MER1_type 2 226 0 9 1580 714 226 158 47 chr3 130504534 130504724 -29095059 - B3 SINE B2 -5 211 1 1 1580 384 315 18 9 chr3 130504833 130504942 -29094841 + PB1D7 SINE Alu 11 120 0 1 1580 1913 140 21 36 chr3 130504947 130505280 -29094503 + ORR1A4 LTR MaLR 1 328 -1 1 1580 217 322 0 0 chr3 130505403 130505462 -29094321 - BC1_Mm scRNA scRNA -86 66 8 1 1580 334 213 28 77 chr3 130508465 130508613 -29091170 + ID_B1 SINE B4 1 181 -43 1 1580 5213 184 35 130 chr3 130508614 130508640 -29091143 - L1_Mur3 LINE L1 -3201 2676 2640 1 1580 558 79 0 0 chr3 130508640 130508716 -29091067 + (TCTA)n Simple_repeat Simple_repeat 4 79 0 1 1580 5213 184 35 130 chr3 130508716 130509387 -29090396 - L1_Mur3 LINE L1 -3238 2639 2080 1 1580 386 81 0 46 chr3 130509387 130509452 -29090331 - B1_Mur4 SINE Alu -1 149 88 1 1580 351 0 0 0 chr3 130509454 130509493 -29090290 + (TG)n Simple_repeat Simple_repeat 1 39 0 1 1580 5213 184 35 130 chr3 130509493 130509924 -29089859 - L1_Mur3 LINE L1 -3800 2077 1648 1 1580 189 0 0 0 chr3 130509924 130509945 -29089838 + (TG)n Simple_repeat Simple_repeat 2 22 0 1 1580 5213 191 27 91 chr3 130509945 130510701 -29089082 - L1_Mur3 LINE L1 -4230 1647 889 1 1580 323 216 34 95 chr3 130511488 130511636 -29088147 - Lx8 LINE L1 0 7473 7335 2 1580 656 185 42 0 chr3 130511666 130511785 -29087998 - B1_Mur4 SINE Alu -12 138 15 2 1580 775 282 70 9 chr3 130511874 130512103 -29087680 - Lx8 LINE L1 -182 7291 7049 2 1580 1484 28 45 0 chr3 130512354 130512531 -29087252 + B2_Mm2 SINE B2 2 186 -9 2 1580 708 196 83 0 chr3 130514166 130514299 -29085484 - B1_Mus2 SINE Alu -1 146 3 2 1580 233 317 19 70 chr3 130514609 130514650 -29085133 - L1MA4A LINE L1 -396 5963 5929 2 1580 387 56 0 0 chr3 130514650 130514704 -29085079 + (CA)n Simple_repeat Simple_repeat 1 54 0 2 1580 808 221 16 1 chr3 130514704 130514888 -29084895 - L1MA4A LINE L1 -371 5932 5748 2 1580 481 235 256 12 chr3 130514877 130515041 -29084742 + L1M3 LINE L1 5562 5765 -403 2 1580 225 277 15 0 chr3 130515340 130515405 -29084378 + CT-rich Low_complexity Low_complexity 1 66 0 2 1580 384 258 56 8 chr3 130515405 130515530 -29084253 - B1F SINE Alu -7 142 12 2 1580 1206 29 0 0 chr3 130515729 130515866 -29083917 - B1_Mm SINE Alu -9 138 2 2 1580 395 110 0 35 chr3 130516362 130516447 -29083336 + (A)n Simple_repeat Simple_repeat 1 82 0 3 1580 261 0 0 0 chr3 130516811 130516840 -29082943 + (CA)n Simple_repeat Simple_repeat 2 30 0 3 1580 426 85 0 0 chr3 130518461 130518520 -29081263 + (CA)n Simple_repeat Simple_repeat 2 60 0 3 1580 2011 138 26 12 chr3 130518534 130518878 -29080905 - ORR1B2 LTR MaLR 0 367 19 3 1580 926 230 43 14 chr3 130519184 130519391 -29080392 + B3 SINE B2 4 216 0 3 1580 351 0 0 0 chr3 130519987 130520026 -29079757 + (T)n Simple_repeat Simple_repeat 1 39 0 3 1580 349 273 0 0 chr3 130520223 130520300 -29079483 + PB1D10 SINE Alu 21 97 -20 3 1580 245 273 129 20 chr3 130520519 130520620 -29079163 - PB1D10 SINE Alu -2 115 4 3 1580 31 0 0 0 chr3 130521243 130521274 -29078509 + AT_rich Low_complexity Low_complexity 1 31 0 3 1580 607 206 79 0 chr3 130521298 130521313 -29078470 - RSINE1 SINE B4 0 165 151 3 1580 501 32 0 0 chr3 130521313 130521376 -29078407 + (GA)n Simple_repeat Simple_repeat 1 63 0 4 1580 607 206 79 0 chr3 130521376 130521486 -29078297 - RSINE1 SINE B4 -15 150 31 3 1580 447 234 58 4 chr3 130523553 130523694 -29076089 - MLT1F1 LTR MaLR -203 345 200 4 1580 294 310 11 11 chr3 130523755 130523843 -29075940 + PB1 SINE Alu 29 116 -11 4 1580 443 191 173 15 chr3 130524077 130524210 -29075573 + URR1A DNA MER1_type 1 154 -72 4 1580 369 120 164 5 chr3 130524207 130524312 -29075471 - B2_Mm2 SINE B2 -9 186 46 4 1580 1035 82 132 6 chr3 130524358 130524517 -29075266 - B2_Mm1t SINE B2 -14 179 1 4 1580 532 82 0 12 chr3 130524520 130524606 -29075177 + URR1A DNA MER1_type 140 224 -2 4 1580 987 122 59 35 chr3 130524623 130524793 -29074990 - B2_Mm2 SINE B2 -19 176 3 4 1580 333 290 30 10 chr3 130524800 130524901 -29074882 - PB1D7 SINE Alu -16 104 2 4 1580 1670 239 114 18 chr3 130525121 130525744 -29074039 + RCHARR1 DNA MER1_type 196 878 -96 4 1580 198 103 0 0 chr3 130525745 130525774 -29074009 + (TGAG)n Simple_repeat Simple_repeat 4 32 0 4 1580 333 0 0 0 chr3 130525776 130525813 -29073970 + (CAGA)n Simple_repeat Simple_repeat 2 38 0 5 1580 229 114 0 0 chr3 130525854 130525889 -29073894 - ORR1C2 LTR MaLR 0 384 350 5 1580 2005 144 118 3 chr3 130525893 130526241 -29073542 - ORR1B1 LTR MaLR -4 390 3 5 1580 3267 227 78 24 chr3 130526243 130527494 -29072289 - ORR1B1-int LTR MaLR 0 1370 1 5 1580 1964 173 77 3 chr3 130527494 130527859 -29071924 - ORR1B1 LTR MaLR -2 392 1 5 1580 955 186 32 5 chr3 130527859 130528048 -29071735 - ORR1C2 LTR MaLR -31 353 160 5 1580 468 156 0 0 chr3 130528048 130528157 -29071626 + GA-rich Low_complexity Low_complexity 1 109 0 5 1580 534 133 0 0 chr3 130528142 130528232 -29071551 + (GGA)n Simple_repeat Simple_repeat 2 91 0 5 1580 737 172 7 7 chr3 130528232 130528367 -29071416 - ORR1C2 LTR MaLR -197 187 53 5 1580 266 311 73 0 chr3 130528367 130528518 -29071265 - MER33 DNA MER1_type -137 187 26 5 1580 408 221 7 122 chr3 130528704 130528731 -29071052 + MT2B LTR ERVL 142 152 -449 5 1580 918 65 0 0 chr3 130528731 130528854 -29070929 + B1_Mm SINE Alu 1 123 -24 5 1580 281 47 0 23 chr3 130528854 130528898 -29070885 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 5 1580 322 21 0 41 chr3 130529007 130529056 -29070727 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 5 1580 234 331 47 8 chr3 130530519 130530647 -29069136 + MIRb SINE MIR 104 236 -32 6 1580 339 25 0 0 chr3 130531169 130531209 -29068574 + (TTTTA)n Simple_repeat Simple_repeat 3 42 0 6 1580 416 19 0 19 chr3 130531605 130531659 -29068124 + (TTTTG)n Simple_repeat Simple_repeat 2 54 0 6 1580 974 251 76 8 chr3 130531734 130531983 -29067800 + B4 SINE B4 9 274 -18 6 1580 260 214 13 91 chr3 130531949 130532026 -29067757 + RSINE1 SINE B4 95 165 0 6 1580 22 0 0 0 chr3 130532310 130532332 -29067451 + AT_rich Low_complexity Low_complexity 1 22 0 6 1580 182 250 0 0 chr3 130532980 130533028 -29066755 + L2a LINE L2 3378 3425 -1 6 1580 279 79 0 0 chr3 130533994 130534032 -29065751 + (TG)n Simple_repeat Simple_repeat 2 39 0 6 1580 292 200 189 0 chr3 130534123 130534213 -29065570 - PB1D10 SINE Alu 0 117 11 6 1580 299 209 32 75 chr3 130534164 130534257 -29065526 - B4A SINE B4 -144 148 60 6 1580 837 257 17 6 chr3 130534349 130534529 -29065254 + B3A SINE B2 1 182 -16 7 1580 333 0 0 0 chr3 130535477 130535514 -29064269 + (ATTG)n Simple_repeat Simple_repeat 4 40 0 7 1580 926 148 0 0 chr3 130535514 130535649 -29064134 - B1_Mur2 SINE Alu -14 135 1 7 1580 333 47 0 0 chr3 130537467 130537510 -29062273 + (CAGA)n Simple_repeat Simple_repeat 2 44 0 7 1580 577 335 83 52 chr3 130537550 130537899 -29061884 - MLT2B2 LTR ERVL -153 362 3 7 1580 301 298 32 0 chr3 130538360 130538454 -29061329 + PB1D10 SINE Alu 21 117 0 7 1580 428 320 112 21 chr3 130539604 130539837 -29059946 - LTR53 LTR ERVL -77 442 189 7 1580 354 45 0 0 chr3 130540214 130540258 -29059525 + (CAT)n Simple_repeat Simple_repeat 3 46 0 7 1580 234 62 0 0 chr3 130543043 130543075 -29056708 + (T)n Simple_repeat Simple_repeat 1 32 0 7 1580 512 254 139 21 chr3 130543708 130543945 -29055838 - B4A SINE B4 -2 290 26 7 1580 21 0 0 0 chr3 130544109 130544130 -29055653 + AT_rich Low_complexity Low_complexity 1 21 0 8 1580 3586 15 2 0 chr3 130544139 130544534 -29055249 - MTA_Mm LTR MaLR 0 396 1 8 1580 212 287 161 8 chr3 130544649 130544779 -29055004 - MIR3 SINE MIR -24 184 35 8 1580 191 316 82 21 chr3 130545065 130545162 -29054621 + MIRb SINE MIR 2 104 -164 8 1580 274 265 29 0 chr3 130545508 130545576 -29054207 - ID4_ SINE ID -11 72 3 8 1580 420 71 0 0 chr3 130546408 130546464 -29053319 + (GGA)n Simple_repeat Simple_repeat 3 58 0 8 1580 2439 78 16 0 chr3 130546740 130547061 -29052722 + ORR1A2 LTR MaLR 1 326 -1 8 1580 252 100 0 0 chr3 130547455 130547495 -29052288 + (T)n Simple_repeat Simple_repeat 1 40 0 8 197 3687 58 89 6 chr3 130547498 130547982 -29051801 - L1Md_F3 LINE L1 -12 6572 6049 8 1581 1832 49 4 0 chr3 130547982 130548207 -29051576 + L1Md_F3 LINE L1 5865 6090 -492 8 1581 372 43 0 0 chr3 130548588 130548634 -29051149 + (TG)n Simple_repeat Simple_repeat 2 47 0 8 1581 370 270 97 26 chr3 130548732 130548846 -29050937 - ID_B1 SINE B4 -6 218 97 9 1581 722 93 0 9 chr3 130550361 130550470 -29049313 + (TTTTC)n Simple_repeat Simple_repeat 2 109 0 9 1581 1291 203 123 6 chr3 130550471 130550789 -29048994 - ORR1D1 LTR MaLR -19 355 1 9 1581 408 88 0 0 chr3 130551011 130551068 -29048715 + (TG)n Simple_repeat Simple_repeat 1 57 0 9 1581 233 164 54 18 chr3 130551359 130551415 -29048368 + (TCTA)n Simple_repeat Simple_repeat 4 61 0 9 1581 21 0 0 0 chr3 130551929 130551950 -29047833 + AT_rich Low_complexity Low_complexity 1 21 0 9 1581 3155 14 0 0 chr3 130552509 130552855 -29046928 - ORR1A0 LTR MaLR 0 346 1 9 1581 692 23 0 0 chr3 130552855 130552941 -29046842 - ORR1A0-int LTR MaLR 0 1792 1707 9 1581 493 35 276 0 chr3 130552938 130553025 -29046758 - MT2C_Mm LTR ERVL -217 258 148 9 1581 944 93 7 0 chr3 130554201 130554351 -29045432 + (TC)n Simple_repeat Simple_repeat 2 152 0 9 1581 321 141 0 0 chr3 130554417 130554488 -29045295 + (TCTG)n Simple_repeat Simple_repeat 2 72 0 9 1581 2133 98 3 0 chr3 130554557 130554875 -29044908 + ORR1A2 LTR MaLR 1 319 -8 1 1581 264 222 292 0 chr3 130554878 130555022 -29044761 - L1MC1 LINE L1 -25 6308 6123 1 1581 383 272 86 8 chr3 130555038 130555170 -29044613 - B3A SINE B2 0 216 77 1 1581 405 272 101 7 chr3 130555190 130555338 -29044445 - L1MC LINE L1 -1809 4337 4176 1 1581 465 66 0 0 chr3 130555351 130555412 -29044371 + (TC)n Simple_repeat Simple_repeat 2 62 0 1 1581 863 81 8 0 chr3 130555414 130555537 -29044246 - B2_Mm2 SINE B2 -71 124 1 1 1581 322 257 116 19 chr3 130555545 130555700 -29044083 - L1MC LINE L1 -1983 4163 3994 1 1581 819 283 20 53 chr3 130556139 130556441 -29043342 + B4A SINE B4 1 292 0 1 1581 22 0 0 0 chr3 130556580 130556602 -29043181 + AT_rich Low_complexity Low_complexity 1 22 0 1 1581 447 202 35 17 chr3 130556656 130556772 -29043011 - L1MC LINE L1 -2901 3245 3128 1 1581 241 284 23 0 chr3 130556777 130556865 -29042918 - L1MC LINE L1 -3317 2829 2740 1 1581 225 226 313 0 chr3 130557794 130557909 -29041874 - L1MC1 LINE L1 -27 6306 6156 1 1581 247 297 0 51 chr3 130557950 130558028 -29041755 - B3A SINE B2 -5 193 120 1 1581 562 256 0 0 chr3 130558069 130558194 -29041589 + B3A SINE B2 1 125 -73 1 1581 232 211 0 37 chr3 130559415 130559469 -29040314 + Lx6 LINE L1 5845 5896 -1564 1 1581 299 235 15 0 chr3 130559640 130559708 -29040075 + ID SINE ID 18 86 -138 1 1581 636 184 35 0 chr3 130559744 130559885 -29039898 + URR1A DNA MER1_type 81 226 0 1 1581 228 35 0 0 chr3 130559966 130559995 -29039788 + (CA)n Simple_repeat Simple_repeat 2 30 0 1 1581 419 303 136 11 chr3 130560073 130560250 -29039533 + Lx8 LINE L1 6874 7072 -401 1 1581 183 100 0 0 chr3 130560491 130560521 -29039262 + (GGGGA)n Simple_repeat Simple_repeat 2 31 0 1 1581 677 269 75 32 chr3 130560811 130561106 -29038677 + MTEa LTR MaLR 62 372 -7 1 1581 252 132 0 0 chr3 130563694 130563732 -29036051 - MTC LTR MaLR -4 417 380 1 1581 1773 137 116 99 chr3 130563732 130563956 -29035827 - MTC LTR MaLR -8 413 211 1 1581 2479 77 0 3 chr3 130563956 130564280 -29035503 - L1_Mus4 LINE L1 -9 6627 6305 1 1581 1773 137 116 99 chr3 130564280 130564459 -29035324 - MTC LTR MaLR -211 210 3 1 1581 457 45 302 67 chr3 130565227 130565346 -29034437 - B2_Mm2 SINE B2 -2 193 47 1 1581 1358 73 11 0 chr3 130565358 130565536 -29034247 - B2_Mm1t SINE B2 -13 180 1 1 1581 1376 166 0 18 chr3 130566861 130567088 -29032695 + URR1B DNA MER1_type 2 224 -1 1 1581 2846 207 29 34 chr3 130567172 130567305 -29032478 - RMER1B Other Other -7 1059 927 1 1581 332 94 0 19 chr3 130567305 130567359 -29032424 + (TAA)n Simple_repeat Simple_repeat 2 54 0 1 1581 2846 207 29 34 chr3 130567359 130567844 -29031939 - RMER1B Other Other -140 926 445 1 1581 846 276 19 0 chr3 130568436 130568646 -29031137 - ID_B1 SINE B4 -1 223 10 1 1581 516 254 124 0 chr3 130568694 130568863 -29030920 - MTEa LTR MaLR 0 379 190 1 1581 644 175 28 28 chr3 130568861 130569002 -29030781 + B1_Mur4 SINE Alu 10 150 0 1 1581 427 81 22 34 chr3 130569002 130569091 -29030692 + (GGA)n Simple_repeat Simple_repeat 2 89 0 1 1581 576 256 78 49 chr3 130569092 130569297 -29030486 - MTEa LTR MaLR -168 211 1 1 1581 377 39 0 19 chr3 130570623 130570675 -29029108 + (TC)n Simple_repeat Simple_repeat 1 51 0 1 1581 29 28 0 0 chr3 130570773 130570809 -29028974 + AT_rich Low_complexity Low_complexity 1 36 0 1 1581 520 246 222 6 chr3 130571158 130571469 -29028314 + Charlie5 DNA MER1_type 2238 2615 -9 1 1581 248 301 55 39 chr3 130572973 130573101 -29026682 - MIR SINE MIR -47 215 86 1 1581 455 313 75 0 chr3 130573446 130573593 -29026190 + B3A SINE B2 12 169 -29 1 1581 351 0 0 0 chr3 130573603 130573642 -29026141 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 1581 387 324 10 0 chr3 130573661 130573763 -29026020 + PB1D9 SINE Alu 1 103 -17 1 1581 31 58 0 0 chr3 130573763 130573815 -29025968 + AT_rich Low_complexity Low_complexity 1 52 0 1 1581 583 306 47 8 chr3 130574119 130574376 -29025407 - L3 LINE CR1 -257 4232 3966 1 1581 1767 125 30 60 chr3 130575652 130575984 -29023799 - RLTRETN_Mm LTR ERVK 0 322 1 1 1581 600 175 355 7 chr3 130577609 130577764 -29022019 + B3 SINE B2 5 213 -3 1 1581 207 307 0 51 chr3 130577945 130578024 -29021759 - MIRb SINE MIR -148 120 46 1 1581 1036 225 85 20 chr3 130578134 130578429 -29021354 - MER2 DNA MER2_type 0 345 32 1 1581 957 41 0 0 chr3 130579717 130579840 -29019943 + B1_Mus2 SINE Alu 12 134 -13 1 1581 366 23 0 0 chr3 130580123 130580166 -29019617 + (TG)n Simple_repeat Simple_repeat 1 43 0 1 1581 441 106 35 12 chr3 130580597 130580683 -29019100 + C-rich Low_complexity Low_complexity 6 93 0 1 1581 291 237 182 20 chr3 130580866 130580965 -29018818 + ID_B1 SINE B4 1 115 -109 1 1581 582 15 0 0 chr3 130581310 130581377 -29018406 + (CAAAC)n Simple_repeat Simple_repeat 2 68 0 1 1581 208 320 72 0 chr3 130581539 130581636 -29018147 - MIR SINE MIR -102 160 57 1 1581 216 0 0 0 chr3 130582881 130582905 -29016878 + (TA)n Simple_repeat Simple_repeat 2 25 0 1 1581 1372 87 27 0 chr3 130582912 130583095 -29016688 - B2_Mm1t SINE B2 -4 189 2 1 1581 187 281 18 0 chr3 130583404 130583461 -29016322 - L2b LINE L2 -71 3304 3247 1 1581 756 0 0 0 chr3 130584168 130584252 -29015531 + (TC)n Simple_repeat Simple_repeat 2 85 0 1 1581 855 130 78 24 chr3 130584801 130584817 -29014966 - B2_Mm2 SINE B2 -19 176 160 1 1581 423 0 0 0 chr3 130584817 130584864 -29014919 + (TTTA)n Simple_repeat Simple_repeat 3 49 0 1 1581 855 130 78 24 chr3 130584864 130585013 -29014770 - B2_Mm2 SINE B2 -36 159 2 1 1581 815 298 60 33 chr3 130585692 130585729 -29014054 + Lx8 LINE L1 6976 7007 -466 1 1581 2681 74 0 47 chr3 130585729 130586111 -29013672 + L1_Mus1 LINE L1 6202 6565 -2 1 1581 972 105 0 0 chr3 130586114 130586257 -29013526 + (GAAAA)n Simple_repeat Simple_repeat 4 146 0 1 1581 815 298 60 33 chr3 130586257 130586548 -29013235 + Lx8 LINE L1 7008 7314 -159 1 1581 201 129 0 0 chr3 130586550 130586581 -29013202 + (TG)n Simple_repeat Simple_repeat 1 31 0 1 1581 189 0 0 0 chr3 130587198 130587219 -29012564 + (CA)n Simple_repeat Simple_repeat 1 21 0 1 1581 370 318 28 34 chr3 130587760 130587939 -29011844 - MER105 DNA DNA -21 183 6 1 1581 23 0 0 0 chr3 130588477 130588500 -29011283 + AT_rich Low_complexity Low_complexity 1 23 0 1 1581 288 77 0 0 chr3 130589579 130589618 -29010165 + (TCC)n Simple_repeat Simple_repeat 2 40 0 1 1581 1468 78 16 10 chr3 130589618 130589811 -29009972 - B2_Mm2 SINE B2 -1 194 1 1 1581 397 361 46 53 chr3 130589817 130590230 -29009553 - L1MC3 LINE L1 -285 7500 7091 1 1581 219 263 0 123 chr3 130590253 130590318 -29009465 + B4A SINE B4 1 57 -235 1 1581 700 322 52 28 chr3 130590363 130590820 -29008963 - L1MC3 LINE L1 -1637 6148 5681 1 1581 712 171 96 0 chr3 130590967 130591113 -29008670 - B3A SINE B2 -38 160 1 1 1581 282 285 197 16 chr3 130591131 130591430 -29008353 - L1MC3 LINE L1 -2338 5657 5294 1 1581 233 182 0 18 chr3 130591474 130591530 -29008253 + CT-rich Low_complexity Low_complexity 4 58 0 1 1581 283 174 0 0 chr3 130591549 130591595 -29008188 - B1F2 SINE Alu -93 56 11 1 1581 1203 124 0 33 chr3 130591636 130591819 -29007964 + B2_Mm2 SINE B2 5 181 -14 1 1581 828 318 64 58 chr3 130591849 130592534 -29007249 - L1MC3 LINE L1 -983 5163 4475 1 1581 420 20 0 0 chr3 130592545 130592594 -29007189 + (CA)n Simple_repeat Simple_repeat 1 49 0 1 1581 765 274 33 19 chr3 130592596 130592808 -29006975 - ID_B1 SINE B4 -8 216 2 1 1581 630 316 59 22 chr3 130592902 130593222 -29006561 - MER2 DNA MER2_type -1 344 13 1 1581 531 208 242 12 chr3 130593251 130593412 -29006371 + B3A SINE B2 1 198 0 1 1581 213 178 0 0 chr3 130593502 130593547 -29006236 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 1581 1062 287 22 0 chr3 130593572 130593840 -29005943 - B4A SINE B4 -14 278 5 1 1581 359 208 165 110 chr3 130593892 130593963 -29005820 - L1MD LINE L1 -1874 4272 4199 1 1581 615 62 0 0 chr3 130593963 130594043 -29005740 + (TTTC)n Simple_repeat Simple_repeat 2 81 0 1 1581 2187 91 0 0 chr3 130594050 130594337 -29005446 - L1_Mus1 LINE L1 -2 6565 6279 1 1581 359 208 165 110 chr3 130594337 130594457 -29005326 - L1MD LINE L1 -1953 4193 4062 1 1581 699 99 0 0 chr3 130595739 130595840 -29003943 + (GGAA)n Simple_repeat Simple_repeat 4 104 0 1 1581 408 71 0 0 chr3 130595950 130596006 -29003777 + (TG)n Simple_repeat Simple_repeat 1 56 0 1 1581 280 296 149 31 chr3 130596014 130596209 -29003574 - B4A SINE B4 0 292 75 1 1581 253 338 57 14 chr3 130596262 130596403 -29003380 - MIR SINE MIR -45 217 71 1 1581 545 190 0 41 chr3 130596956 130597077 -29002706 + RSINE1 SINE B4 11 126 -39 1 1581 654 281 15 15 chr3 130597625 130597827 -29001956 - MIRc SINE MIR -3 265 64 1 1581 342 67 0 0 chr3 130598016 130598061 -29001722 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 1581 214 258 0 29 chr3 130598425 130598493 -29001290 + (TAAA)n Simple_repeat Simple_repeat 1 66 0 1 1581 609 255 26 13 chr3 130598572 130598727 -29001056 + B3A SINE B2 1 157 -41 1 1581 399 41 0 0 chr3 130598730 130598779 -29001004 + (CA)n Simple_repeat Simple_repeat 1 49 0 1 1581 21 0 0 0 chr3 130599022 130599043 -29000740 + AT_rich Low_complexity Low_complexity 1 21 0 1 1581 517 318 112 8 chr3 130599192 130599452 -29000331 + B4A SINE B4 2 288 -4 1 1581 717 127 31 25 chr3 130599463 130599625 -29000158 + G-rich Low_complexity Low_complexity 1 163 0 1 1581 323 272 120 0 chr3 130599689 130599700 -29000083 + B1F SINE Alu 7 144 -3 1 1581 610 161 80 0 chr3 130599700 130599812 -28999971 + ID_B1 SINE B4 100 220 -4 1 1581 773 247 27 36 chr3 130600148 130600371 -28999412 + B4 SINE B4 3 223 -69 1 1581 180 77 0 0 chr3 130600435 130600461 -28999322 + (CA)n Simple_repeat Simple_repeat 1 26 0 1 1581 848 129 0 7 chr3 130601073 130601214 -28998569 + B1_Mus1 SINE Alu 8 147 -1 1 1581 353 75 19 0 chr3 130601513 130601566 -28998217 + (TAAA)n Simple_repeat Simple_repeat 2 55 0 1 1581 441 84 0 0 chr3 130601824 130601895 -28997888 + (TC)n Simple_repeat Simple_repeat 2 72 0 1 1581 261 0 0 0 chr3 130601895 130601924 -28997859 + (CA)n Simple_repeat Simple_repeat 1 29 0 1 1581 287 270 62 20 chr3 130602533 130602670 -28997113 - MIR SINE MIR -46 216 81 2 1581 245 197 60 15 chr3 130605023 130605090 -28994693 + (TATATG)n Simple_repeat Simple_repeat 3 72 0 2 1581 285 268 71 10 chr3 130607906 130608004 -28991779 - MLT1E LTR MaLR -2 651 548 2 1581 279 0 0 0 chr3 130608058 130608089 -28991694 + (GGGGA)n Simple_repeat Simple_repeat 1 31 0 2 1581 1304 282 53 41 chr3 130608333 130608898 -28990885 - L1MDa LINE L1 -2157 4380 3809 2 1581 389 297 53 31 chr3 130609140 130609366 -28990417 - L1MDa LINE L1 -4823 1810 1580 2 1581 634 246 59 21 chr3 130609487 130609512 -28990271 - B3A SINE B2 -4 194 170 2 1581 555 56 0 0 chr3 130609512 130609583 -28990200 + (TATG)n Simple_repeat Simple_repeat 4 74 0 2 1581 708 206 43 6 chr3 130609583 130609744 -28990039 - B3 SINE B2 -49 167 1 2 1581 501 17 0 0 chr3 130609850 130609908 -28989875 + (TC)n Simple_repeat Simple_repeat 1 58 0 2 1581 644 180 7 59 chr3 130609924 130610060 -28989723 - B1_Mur4 SINE Alu -21 129 1 2 1581 282 218 10 155 chr3 130609973 130610076 -28989707 - MT2B LTR ERVL -361 240 153 2 1581 676 213 176 56 chr3 130610078 130610362 -28989421 - L1MDa LINE L1 -5392 1241 924 2 1581 240 296 134 16 chr3 130610536 130610663 -28989120 - L1MDa LINE L1 -6097 536 395 2 1581 1141 128 47 0 chr3 130611255 130611427 -28988356 + B2_Mm2 SINE B2 2 181 -14 2 1581 299 144 16 35 chr3 130611477 130611545 -28988238 + B2_Mm2 SINE B2 45 116 -82 2 1581 375 145 0 0 chr3 130611611 130611680 -28988103 + (TG)n Simple_repeat Simple_repeat 2 70 0 2 1581 863 90 7 0 chr3 130612751 130612895 -28986888 + (TC)n Simple_repeat Simple_repeat 1 145 0 2 1581 246 62 0 0 chr3 130613594 130613626 -28986157 + (T)n Simple_repeat Simple_repeat 1 32 0 2 1581 1170 61 0 57 chr3 130613626 130613783 -28986000 - B1_Mus1 SINE Alu 0 148 1 2 1581 943 279 0 76 chr3 130613876 130614167 -28985616 + B4A SINE B4 5 273 -19 2 1581 402 113 155 0 chr3 130614188 130614259 -28985524 + B1_Mur4 SINE Alu 48 129 -21 2 1581 710 165 311 0 chr3 130614367 130614531 -28985252 + B3 SINE B2 2 216 0 2 1581 1054 71 7 0 chr3 130614554 130614695 -28985088 - B1_Mus2 SINE Alu 0 147 6 2 1581 248 364 88 46 chr3 130617091 130617330 -28982453 + MER102c DNA MER1_type 74 322 -9 2 1581 339 25 0 0 chr3 130617420 130617460 -28982323 + (TG)n Simple_repeat Simple_repeat 2 41 0 2 1581 376 304 17 9 chr3 130618414 130618530 -28981253 - L2a LINE L2 -6 3420 3304 2 1581 187 340 53 102 chr3 130619823 130620029 -28979754 - MIRb SINE MIR -31 237 42 2 1581 1090 258 113 20 chr3 130620170 130620514 -28979269 - MTEb LTR MaLR 0 379 4 2 1581 2362 87 123 0 chr3 130621023 130621389 -28978394 + IAPLTR2a LTR ERVK 1 411 0 2 1581 1030 89 94 12 chr3 130621390 130621561 -28978222 + IAPEz-int LTR ERVK 9 193 -6288 2 1581 234 327 0 0 chr3 130621561 130621616 -28978167 + RLTR27 LTR ERVK 221 275 -34 2 1581 3997 51 2 18 chr3 130621616 130622119 -28977664 + IAPEz-int LTR ERVK 168 662 -5819 2 1581 2193 83 0 0 chr3 130622119 130622397 -28977386 + IAPEz-int LTR ERVK 1359 1636 -4845 2 1581 6323 43 4 0 chr3 130622396 130623139 -28976644 + IAPEz-int LTR ERVK 5736 6481 0 2 1581 2362 87 123 0 chr3 130623139 130623505 -28976278 + IAPLTR2a LTR ERVK 1 411 0 2 1581 783 216 0 0 chr3 130623733 130624082 -28975701 + (TG)n Simple_repeat Simple_repeat 1 349 0 2 1581 922 157 6 6 chr3 130624094 130624273 -28975510 + (TG)n Simple_repeat Simple_repeat 2 180 0 2 1581 575 254 26 35 chr3 130625177 130625369 -28974414 + B3A SINE B2 32 215 -1 2 1581 295 23 45 0 chr3 130627156 130627200 -28972583 + (CAAA)n Simple_repeat Simple_repeat 2 47 0 2 1581 967 158 4 9 chr3 130628745 130628975 -28970808 + GA-rich Low_complexity Low_complexity 1 228 0 2 1581 531 0 0 0 chr3 130628975 130629034 -28970749 + (GAA)n Simple_repeat Simple_repeat 2 60 0 2 1581 378 278 235 0 chr3 130629310 130629472 -28970311 - B3 SINE B2 -11 205 6 2 1581 795 297 18 11 chr3 130629723 130629995 -28969788 + B4A SINE B4 2 275 -17 2 1581 522 46 0 0 chr3 130630036 130630101 -28969682 + (TC)n Simple_repeat Simple_repeat 1 65 0 2 1581 223 251 98 122 chr3 130630268 130630465 -28969318 + L2a LINE L2 3211 3413 -13 2 1581 363 301 87 58 chr3 130630954 130631127 -28968656 + MIR SINE MIR 45 222 -40 2 1581 180 0 0 0 chr3 130631948 130631968 -28967815 + (T)n Simple_repeat Simple_repeat 1 20 0 2 1581 942 174 0 0 chr3 130633771 130634029 -28965754 + (CA)n Simple_repeat Simple_repeat 1 258 0 2 1581 320 114 0 0 chr3 130634029 130634073 -28965710 + HAL1-3A_ME LINE L1 1975 2018 -840 2 1581 24 32 0 0 chr3 130634628 130634659 -28965124 + AT_rich Low_complexity Low_complexity 1 31 0 2 1581 242 269 25 37 chr3 130634945 130635026 -28964757 - YREP_Mm Unknown Unknown -1482 330 251 2 1581 363 270 19 39 chr3 130634980 130635084 -28964699 + PB1 SINE Alu 21 122 -5 2 1581 360 0 0 0 chr3 130635116 130635156 -28964627 + (TG)n Simple_repeat Simple_repeat 2 41 0 2 1581 912 245 42 83 chr3 130635173 130635462 -28964321 - B4 SINE B4 -14 278 2 2 1581 2369 157 13 76 chr3 130637306 130637755 -28962028 + MTC LTR MaLR 1 421 0 2 1581 512 15 15 0 chr3 130639794 130639859 -28959924 + (TTTTG)n Simple_repeat Simple_repeat 5 70 0 2 1581 289 250 13 32 chr3 130640262 130640352 -28959431 + MIRc SINE MIR 80 161 -107 2 1581 334 236 76 82 chr3 130640919 130641090 -28958693 + L1ME4a LINE L1 5843 6012 -112 2 1581 767 156 30 6 chr3 130641095 130641263 -28958520 + G-rich Low_complexity Low_complexity 5 176 0 2 1581 324 277 16 89 chr3 130641723 130641846 -28957937 + B3 SINE B2 103 216 0 2 1581 553 244 29 15 chr3 130641913 130642050 -28957733 - B4A SINE B4 -4 288 150 2 1581 747 87 0 0 chr3 130642098 130642202 -28957581 + (TTTC)n Simple_repeat Simple_repeat 4 107 0 2 1581 1072 119 0 11 chr3 130642227 130642406 -28957377 + (TTC)n Simple_repeat Simple_repeat 3 179 0 2 1581 754 181 72 0 chr3 130642407 130642545 -28957238 - B1_Mur4 SINE Alu -2 148 1 2 1581 996 169 143 0 chr3 130642599 130642788 -28956995 + B3 SINE B2 1 216 0 2 1581 323 260 39 0 chr3 130642812 130642889 -28956894 + B4A SINE B4 8 87 -205 2 1581 266 210 31 31 chr3 130644528 130644592 -28955191 + MLT1J1 LTR MaLR 3 66 -378 2 1581 200 269 39 0 chr3 130644745 130644797 -28954986 + (CATG)n Simple_repeat Simple_repeat 4 57 0 2 1581 272 137 20 0 chr3 130644800 130644851 -28954932 + (CA)n Simple_repeat Simple_repeat 1 52 0 2 1581 201 311 83 122 chr3 130644939 130645144 -28954639 - MIRc SINE MIR -18 250 54 2 1581 181 256 0 0 chr3 130645903 130645946 -28953837 + L3 LINE CR1 1089 1131 -3358 2 1581 883 154 0 26 chr3 130646875 130647028 -28952755 + B1_Mur4 SINE Alu 2 150 0 2 1581 189 0 0 0 chr3 130647992 130648013 -28951770 + (TTCA)n Simple_repeat Simple_repeat 1 21 0 2 1581 205 51 51 0 chr3 130648268 130648307 -28951476 + (CAAAA)n Simple_repeat Simple_repeat 2 42 0 2 1581 279 79 0 0 chr3 130649125 130649163 -28950620 + (CTCG)n Simple_repeat Simple_repeat 1 38 0 2 1581 567 0 0 0 chr3 130649437 130649500 -28950283 + (TTTC)n Simple_repeat Simple_repeat 2 64 0 2 1581 740 253 37 5 chr3 130650919 130651110 -28948673 - B3A SINE B2 0 198 2 2 1581 183 156 0 0 chr3 130651147 130651179 -28948604 + T-rich Low_complexity Low_complexity 4 35 0 2 1581 1291 27 0 0 chr3 130651179 130651326 -28948457 - B1_Mus2 SINE Alu 0 147 1 2 1581 225 24 71 0 chr3 130651328 130651370 -28948413 + (TTTTTG)n Simple_repeat Simple_repeat 1 45 0 2 1581 1140 241 29 38 chr3 130652262 130652607 -28947176 + RLTR15 LTR ERVK 2 343 -16 2 1581 807 229 38 5 chr3 130653202 130653386 -28946397 + B3A SINE B2 1 190 -8 2 1581 744 261 98 35 chr3 130653440 130653694 -28946089 + B4A SINE B4 1 270 -22 2 1581 225 331 76 15 chr3 130654000 130654132 -28945651 + MIRc SINE MIR 90 229 -39 2 1581 513 47 0 0 chr3 130654809 130654873 -28944910 + (TCTCCC)n Simple_repeat Simple_repeat 1 64 0 2 1581 397 287 0 42 chr3 130655110 130655230 -28944553 - PB1D10 SINE Alu 0 117 3 2 1581 1535 221 136 21 chr3 130656278 130656652 -28943131 + MTD LTR MaLR 3 419 0 2 1581 1715 234 79 10 chr3 130657266 130657658 -28942125 + MTD LTR MaLR 1 419 0 2 1581 2138 191 108 51 chr3 130657659 130658194 -28941589 + MTD-int LTR MaLR 2 553 -705 2 1581 396 0 0 0 chr3 130658796 130658840 -28940943 + (A)n Simple_repeat Simple_repeat 1 44 0 2 1581 356 319 81 40 chr3 130658866 130659088 -28940695 - LTR81A LTR ERV1? -1116 234 4 2 1581 233 259 59 108 chr3 130659707 130659893 -28939890 + YREP_Mm Unknown Unknown 121 297 -1515 2 1581 681 196 75 0 chr3 130659771 130659904 -28939879 - B1F SINE Alu 0 149 7 2 1581 199 311 108 0 chr3 130659915 130659989 -28939794 - MIR SINE MIR -105 157 76 2 1581 303 49 0 0 chr3 130660103 130660144 -28939639 + (TCC)n Simple_repeat Simple_repeat 1 41 0 2 1581 340 138 17 0 chr3 130660144 130660202 -28939581 - B1F2 SINE Alu -90 59 1 2 1581 225 0 0 0 chr3 130660824 130660849 -28938934 + (TAA)n Simple_repeat Simple_repeat 3 27 0 2 1581 180 237 0 0 chr3 130660924 130660962 -28938821 - MIRb SINE MIR -16 252 215 2 1581 29 28 0 0 chr3 130661397 130661433 -28938350 + AT_rich Low_complexity Low_complexity 1 36 0 2 1581 1101 173 5 34 chr3 130661945 130662149 -28937634 + URR1A DNA MER1_type 1 198 -28 2 1581 307 343 134 61 chr3 130663481 130663823 -28935960 + L1ME3B LINE L1 5572 5938 -302 2 1581 364 217 64 21 chr3 130664273 130664367 -28935416 - PB1D10 SINE Alu -19 98 1 2 1581 207 146 0 77 chr3 130664731 130664783 -28935000 + C-rich Low_complexity Low_complexity 4 51 0 2 1581 342 0 0 0 chr3 130666276 130666314 -28933469 + (TG)n Simple_repeat Simple_repeat 2 39 0 2 1581 277 141 62 0 chr3 130667053 130667117 -28932666 + GA-rich Low_complexity Low_complexity 3 70 0 2 1581 414 225 33 11 chr3 130668509 130668590 -28931193 - B1F SINE Alu -41 108 25 2 1581 225 0 0 0 chr3 130668590 130668615 -28931168 + (TTTA)n Simple_repeat Simple_repeat 1 25 0 2 1581 750 176 0 34 chr3 130668625 130668772 -28931011 + B1_Mur4 SINE Alu 8 149 -1 2 1581 319 281 62 73 chr3 130668797 130668893 -28930890 - RSINE1 SINE B4 0 165 71 2 1581 547 252 80 25 chr3 130670003 130670166 -28929617 + B4A SINE B4 99 270 -22 2 1581 364 53 35 0 chr3 130670174 130670231 -28929552 - HAL1-3A_ME LINE L1 -824 2034 1976 3 1581 553 86 9 19 chr3 130670231 130670338 -28929445 + (TCTG)n Simple_repeat Simple_repeat 2 107 0 3 1581 235 333 78 39 chr3 130670358 130670378 -28929405 + MLT1F2 LTR MaLR 29 48 -521 3 1581 192 40 0 0 chr3 130670378 130670403 -28929380 + (CA)n Simple_repeat Simple_repeat 2 26 0 3 1581 251 323 57 33 chr3 130670403 130670606 -28929177 + MLT1F2 LTR MaLR 418 552 -8 3 1581 338 320 144 0 chr3 130672875 130673069 -28926714 - L2a LINE L2 0 3426 3205 3 1581 575 304 23 42 chr3 130674671 130674887 -28924896 + ID_B1 SINE B4 1 212 -12 3 1581 315 242 0 0 chr3 130674852 130674914 -28924869 - ID_B1 SINE B4 -61 163 102 3 1581 337 224 40 0 chr3 130675035 130675111 -28924672 + ORR1D1 LTR MaLR 5 83 -291 3 1581 722 231 17 0 chr3 130675112 130675285 -28924498 - ORR1D1 LTR MaLR -10 364 189 3 1581 569 142 97 0 chr3 130675284 130675397 -28924386 + ORR1D1-int LTR MaLR 1243 1366 -4 3 1581 834 149 552 0 chr3 130675401 130675642 -28924141 + ORR1D1 LTR MaLR 1 374 0 3 1581 1145 257 68 4 chr3 130676920 130677278 -28922505 + MTEb LTR MaLR 10 379 0 3 1581 325 264 83 0 chr3 130677596 130677717 -28922066 - L1MC1 LINE L1 -51 6282 6152 3 1582 1320 253 41 53 chr3 130679051 130679519 -28920264 + RMER5 LTR ERV1 68 529 -5 3 1582 291 323 66 25 chr3 130679903 130680100 -28919683 + Kanga2_a DNA Tc2 75 279 -609 3 1582 351 0 0 0 chr3 130680272 130680311 -28919472 + (TG)n Simple_repeat Simple_repeat 1 39 0 3 1582 505 284 57 19 chr3 130680314 130680472 -28919311 - B3A SINE B2 -34 164 1 3 1582 267 207 46 0 chr3 130680527 130680614 -28919169 + Kanga2_a DNA Tc2 596 686 -202 3 1582 215 148 241 0 chr3 130681968 130682022 -28917761 - B1_Mur2 SINE Alu 0 149 83 3 1582 324 0 0 0 chr3 130682766 130682802 -28916981 + (T)n Simple_repeat Simple_repeat 1 36 0 3 1582 1052 193 82 0 chr3 130683368 130683575 -28916208 + URR1A DNA MER1_type 1 224 -2 3 1582 24 32 0 0 chr3 130683610 130683641 -28916142 + AT_rich Low_complexity Low_complexity 1 31 0 3 1582 315 167 0 0 chr3 130683688 130683754 -28916029 + C-rich Low_complexity Low_complexity 6 71 0 3 1582 243 159 43 14 chr3 130683917 130683987 -28915796 + CT-rich Low_complexity Low_complexity 3 74 0 3 1582 362 289 35 0 chr3 130683999 130684113 -28915670 - ID_B1 SINE B4 -15 209 92 3 1582 277 264 58 88 chr3 130684113 130684126 -28915657 - B1F SINE Alu -15 84 2 3 1582 390 254 101 23 chr3 130684649 130684778 -28915005 + MER96 DNA hAT 20 158 -17 3 1582 1053 48 43 13 chr3 130684896 130685126 -28914657 + (TAGA)n Simple_repeat Simple_repeat 1 236 0 3 1582 1211 68 0 0 chr3 130685354 130685502 -28914281 + B1_Mus1 SINE Alu 1 148 0 3 1582 341 227 9 0 chr3 130685544 130685654 -28914129 + (CA)n Simple_repeat Simple_repeat 1 111 0 3 1582 222 118 0 0 chr3 130686460 130686494 -28913289 + (TCCC)n Simple_repeat Simple_repeat 2 35 0 3 1582 595 182 180 14 chr3 130687238 130687377 -28912406 + B3A SINE B2 1 162 -36 3 1582 321 26 0 0 chr3 130687407 130687445 -28912338 + (TG)n Simple_repeat Simple_repeat 1 38 0 3 1582 333 0 0 0 chr3 130687445 130687481 -28912302 + (GA)n Simple_repeat Simple_repeat 1 37 0 3 1582 261 245 128 16 chr3 130687492 130687662 -28912121 + MTE2b LTR MaLR 185 371 -8 3 1582 410 299 0 0 chr3 130687894 130688001 -28911782 + B1F SINE Alu 28 134 -15 3 1582 183 42 0 0 chr3 130688005 130688029 -28911754 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 3 1582 653 169 91 49 chr3 130688111 130688254 -28911529 + B1_Mur4 SINE Alu 2 150 0 3 1582 245 335 104 38 chr3 130689469 130689680 -28910103 + Charlie4a DNA MER1_type 123 347 -161 3 1582 237 272 63 16 chr3 130691000 130691127 -28908656 - RMER15 LTR ERVL -96 479 347 3 1582 786 37 19 0 chr3 130691247 130691354 -28908429 - B1_Mus1 SINE Alu 0 148 40 3 1582 1276 165 203 29 chr3 130691387 130691736 -28908047 - RMER17C LTR ERVK 0 410 1 3 1582 232 256 229 8 chr3 130691961 130692083 -28907700 - MIR SINE MIR -60 202 54 3 1582 352 205 11 108 chr3 130692493 130692586 -28907197 + PB1D10 SINE Alu 27 110 -7 3 1582 353 376 16 20 chr3 130692899 130693146 -28906637 + Lx8 LINE L1 7107 7352 -121 3 1582 1166 185 69 8 chr3 130693158 130693403 -28906380 + ORR1D1 LTR MaLR 1 260 -114 3 1582 189 322 57 41 chr3 130693874 130693997 -28905786 - MIRb SINE MIR -111 157 33 3 1582 420 272 9 17 chr3 130694704 130694820 -28904963 + B1F SINE Alu 1 115 -34 3 1582 306 0 0 0 chr3 130694863 130694897 -28904886 + (CAAAA)n Simple_repeat Simple_repeat 5 38 0 3 1582 722 280 96 7 chr3 130695599 130695869 -28903914 - MER2 DNA MER2_type -51 294 1 3 1582 1186 138 111 19 chr3 130696071 130696278 -28903505 + URR1A DNA MER1_type 1 226 0 3 1582 312 240 19 0 chr3 130696604 130696687 -28903096 + PB1D10 SINE Alu 12 98 -51 3 1582 680 222 17 12 chr3 130697253 130697426 -28902357 + L1_Mur2 LINE L1 4787 4960 -917 3 1582 342 278 0 0 chr3 130697953 130698025 -28901758 - ID4 SINE ID -10 73 2 3 1582 186 341 0 89 chr3 130698351 130698441 -28901342 + L2b LINE L2 3294 3375 0 3 1582 576 315 51 5 chr3 130698785 130699002 -28900781 + MIRc SINE MIR 29 255 -13 3 1582 301 337 0 0 chr3 130700142 130700237 -28899546 + MER5A DNA MER1_type 91 185 -4 3 1582 1190 82 0 0 chr3 130700246 130700393 -28899390 + B1_Mus1 SINE Alu 2 148 0 3 1582 235 62 0 77 chr3 130701247 130701299 -28898484 + (TTTTTG)n Simple_repeat Simple_repeat 4 51 0 3 1582 201 39 0 0 chr3 130701438 130701464 -28898319 + (C)n Simple_repeat Simple_repeat 1 26 0 3 1582 377 246 0 8 chr3 130702287 130702406 -28897377 + (CA)n Simple_repeat Simple_repeat 2 119 0 3 1582 22 0 0 0 chr3 130703275 130703297 -28896486 + AT_rich Low_complexity Low_complexity 1 22 0 3 1582 548 250 64 0 chr3 130704472 130704628 -28895155 + MER5A1 DNA MER1_type 1 166 0 3 1582 446 267 0 0 chr3 130705484 130705574 -28894209 - 5S rRNA rRNA -31 90 1 3 1582 1190 68 0 0 chr3 130705653 130705799 -28893984 + B1_Mus2 SINE Alu 2 147 0 3 1582 189 0 0 0 chr3 130705802 130705823 -28893960 + (CAAAA)n Simple_repeat Simple_repeat 5 25 0 3 1582 1632 178 97 3 chr3 130707625 130707974 -28891809 - MTD LTR MaLR -26 393 12 3 1582 359 45 32 63 chr3 130707988 130708083 -28891700 + (CAAA)n Simple_repeat Simple_repeat 2 93 0 3 1582 335 326 42 14 chr3 130708304 130708447 -28891336 - L1MC5 LINE L1 -1135 6826 6680 3 1582 592 307 0 26 chr3 130708535 130708689 -28891094 + RSINE1 SINE B4 3 152 -13 3 1582 368 323 6 12 chr3 130708927 130709096 -28890687 + L1MC3 LINE L1 7409 7576 -209 3 1582 590 246 0 31 chr3 130709104 130709234 -28890549 + RSINE1 SINE B4 3 128 -37 3 1582 25 31 0 0 chr3 130709289 130709321 -28890462 + AT_rich Low_complexity Low_complexity 1 32 0 3 1582 22 56 0 0 chr3 130709340 130709376 -28890407 + AT_rich Low_complexity Low_complexity 1 36 0 3 1582 681 217 75 32 chr3 130709377 130709563 -28890220 - B3A SINE B2 -1 197 4 3 1582 332 242 14 90 chr3 130709590 130709735 -28890048 + L1MC3 LINE L1 7637 7770 -15 3 1582 599 214 50 0 chr3 130709781 130709921 -28889862 + L1M2 LINE L1 5489 5635 -665 3 1582 399 221 48 0 chr3 130709923 130710017 -28889766 + ORR1C2 LTR MaLR 3 101 -277 3 1582 2391 184 59 179 chr3 130710017 130710835 -28888948 + RMER6C LTR ERVK 1 720 0 3 1582 1259 195 47 25 chr3 130710845 130711063 -28888720 + ORR1C2 LTR MaLR 100 326 -58 3 1582 3493 33 2 0 chr3 130711063 130711458 -28888325 + MTA_Mm LTR MaLR 1 396 0 3 1582 1259 195 47 25 chr3 130711458 130711518 -28888265 + ORR1C2 LTR MaLR 327 384 0 3 1582 1056 243 121 15 chr3 130711525 130711855 -28887928 + Lx7 LINE L1 5608 5972 -1724 3 1582 251 303 68 8 chr3 130712729 130712862 -28886921 + L1MB1 LINE L1 5999 6139 -29 3 1582 213 65 0 0 chr3 130713530 130713561 -28886222 + (T)n Simple_repeat Simple_repeat 1 31 0 3 1582 690 148 0 0 chr3 130714671 130714786 -28884997 - RLTR11B LTR ERVK -338 115 1 3 1582 921 147 0 85 chr3 130714884 130715048 -28884735 + B1_Mur4 SINE Alu 1 150 0 3 1582 198 0 0 0 chr3 130715197 130715219 -28884564 + (T)n Simple_repeat Simple_repeat 1 22 0 3 1582 236 309 0 24 chr3 130715219 130715302 -28884481 - ID4 SINE ID 0 83 3 3 1582 204 97 0 0 chr3 130715714 130715745 -28884038 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 3 1582 372 181 142 9 chr3 130715822 130715928 -28883855 + B3 SINE B2 97 216 0 3 1582 1179 85 90 0 chr3 130717885 130718062 -28881721 + B2_Mm2 SINE B2 1 193 -2 3 1582 1169 36 0 0 chr3 130718064 130718201 -28881582 + B1_Mus2 SINE Alu 1 137 -10 3 1582 210 301 21 31 chr3 130718531 130718627 -28881156 + MIRb SINE MIR 116 210 -58 3 1582 597 256 126 32 chr3 130719784 130719974 -28879809 + ID_B1 SINE B4 10 217 -7 3 1582 783 160 15 0 chr3 130720054 130720185 -28879598 + B1_Mur4 SINE Alu 6 138 -12 3 1582 297 0 0 0 chr3 130720185 130720218 -28879565 + (TAAA)n Simple_repeat Simple_repeat 3 35 0 3 1582 194 0 39 0 chr3 130720226 130720252 -28879531 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 3 1582 216 0 0 0 chr3 130724504 130724528 -28875255 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 3 1582 348 24 0 0 chr3 130725200 130725241 -28874542 + (CA)n Simple_repeat Simple_repeat 2 42 0 3 1582 1390 95 5 0 chr3 130725486 130725675 -28874108 + B2_Mm1a SINE B2 2 191 -2 3 1582 1158 123 12 4 chr3 130726438 130726682 -28873101 + (CA)n Simple_repeat Simple_repeat 1 245 0 3 1582 191 36 36 0 chr3 130726681 130726709 -28873074 + (GGGA)n Simple_repeat Simple_repeat 4 32 0 3 1582 450 309 156 53 chr3 130726790 130727053 -28872730 + B4A SINE B4 2 291 -1 3 1582 198 71 0 0 chr3 130727075 130727103 -28872680 + (CA)n Simple_repeat Simple_repeat 1 28 0 3 1582 672 282 117 40 chr3 130727990 130728341 -28871442 + MTEa LTR MaLR 2 379 0 4 1582 358 284 8 33 chr3 130728698 130728818 -28870965 + MT2A LTR ERVL 234 350 -183 4 1582 425 133 0 13 chr3 130728929 130729005 -28870778 + (TATG)n Simple_repeat Simple_repeat 1 75 0 4 1582 234 192 96 0 chr3 130729005 130729057 -28870726 + MLT2B1 LTR ERVL 511 567 0 4 1582 246 186 0 92 chr3 130729129 130729194 -28870589 - B1_Mur4 SINE Alu -91 59 1 4 1582 1275 184 43 18 chr3 130729588 130729865 -28869918 + RLTR22_Mur LTR ERVK 1294 1577 -271 4 1582 1191 49 0 0 chr3 130729865 130730007 -28869776 + B1_Mus1 SINE Alu 1 142 -6 4 1582 189 0 0 0 chr3 130730009 130730030 -28869753 + (GAAAA)n Simple_repeat Simple_repeat 2 22 0 4 1582 1158 283 83 45 chr3 130730032 130730635 -28869148 + L1_Mur3 LINE L1 4195 4820 -1060 4 1582 447 269 33 44 chr3 130730800 130730983 -28868800 + Lx9 LINE L1 5796 5976 -1668 4 1582 317 364 0 0 chr3 130731059 130731177 -28868606 + G-rich Low_complexity Low_complexity 1 118 0 4 1582 1681 284 29 16 chr3 130731212 130731702 -28868081 + Lx8 LINE L1 6263 6758 -715 4 1582 1261 259 141 36 chr3 130731712 130732181 -28867602 + Lx8 LINE L1 6955 7472 -1 4 1582 1369 92 16 0 chr3 130732195 130732379 -28867404 + B2_Mm2 SINE B2 2 188 -7 4 1582 491 80 13 0 chr3 130732467 130732542 -28867241 + B1_Mus2 SINE Alu 72 147 0 4 1582 228 145 35 52 chr3 130732581 130732639 -28867144 - Lx8 LINE L1 -32 7441 7385 4 1582 396 0 0 0 chr3 130732645 130732689 -28867094 + (CA)n Simple_repeat Simple_repeat 2 45 0 4 1582 410 267 20 10 chr3 130732689 130732791 -28866992 - Lx7 LINE L1 -388 7308 7206 4 1582 884 309 15 4 chr3 130732832 130733095 -28866688 + Lx7 LINE L1 6926 7191 -505 4 1582 419 52 17 0 chr3 130733247 130733305 -28866478 + (TC)n Simple_repeat Simple_repeat 2 60 0 4 1582 261 0 0 0 chr3 130733305 130733334 -28866449 + (CA)n Simple_repeat Simple_repeat 1 29 0 4 1582 208 70 23 23 chr3 130733420 130733464 -28866319 + (TTG)n Simple_repeat Simple_repeat 2 45 0 4 1582 801 209 7 26 chr3 130733470 130733622 -28866161 - B1_Mur3 SINE Alu 0 149 1 4 1582 887 312 116 16 chr3 130733645 130734153 -28865630 - MER63C DNA AcHobo -1 929 371 4 1582 347 259 173 20 chr3 130734268 130734418 -28865365 - MER63C DNA AcHobo -757 173 1 4 1582 470 304 131 32 chr3 130735826 130736139 -28863644 + MLT1K LTR MaLR 121 464 -131 4 1582 1308 99 5 25 chr3 130736160 130736357 -28863426 + B2_Mm2 SINE B2 1 193 -2 4 1582 966 116 0 0 chr3 130736364 130736511 -28863272 + (GGGA)n Simple_repeat Simple_repeat 4 150 0 4 1582 1894 111 39 62 chr3 130736711 130737048 -28862735 - ORR1A4 LTR MaLR 0 329 1 4 1582 324 0 0 0 chr3 130737611 130737647 -28862136 + (TG)n Simple_repeat Simple_repeat 1 36 0 4 1582 1281 274 89 63 chr3 130738379 130739015 -28860768 + L1_Rod LINE L1 5097 5771 -76 4 1582 1237 34 7 0 chr3 130739015 130739161 -28860622 + B1_Mm SINE Alu 1 147 0 4 1582 1281 274 89 63 chr3 130739161 130739182 -28860601 + L1_Rod LINE L1 5772 5779 -68 4 1582 1336 78 44 0 chr3 130739182 130739362 -28860421 + B2_Mm2 SINE B2 1 188 -7 4 1582 1281 274 89 63 chr3 130739362 130739434 -28860349 + L1_Rod LINE L1 5780 5846 -1 4 1582 306 98 0 0 chr3 130739907 130739958 -28859825 + (GA)n Simple_repeat Simple_repeat 2 52 0 4 1582 598 250 30 6 chr3 130739958 130740127 -28859656 - B3A SINE B2 -25 173 1 4 1582 248 261 0 14 chr3 130740712 130740782 -28859001 + (TATATG)n Simple_repeat Simple_repeat 2 70 0 4 1582 303 257 17 52 chr3 130740830 130740945 -28858838 + (TATATG)n Simple_repeat Simple_repeat 2 112 0 4 1582 412 337 64 0 chr3 130740953 130741125 -28858658 - B4A SINE B4 -4 288 106 4 1582 665 294 0 19 chr3 130741127 130741283 -28858500 - B4A SINE B4 -104 188 36 4 1582 579 224 100 13 chr3 130742455 130742684 -28857099 + MTEa LTR MaLR 99 369 -10 4 1582 369 218 125 25 chr3 130743002 130743162 -28856621 - L1ME1 LINE L1 -110 6069 5894 4 1582 277 331 29 7 chr3 130743642 130743779 -28856004 + B1F1 SINE Alu 1 140 -9 4 1582 477 297 99 78 chr3 130743940 130744386 -28855397 - L1MEc LINE L1 -5097 1303 849 4 1582 287 256 0 137 chr3 130744394 130744489 -28855294 - B4A SINE B4 -3 289 208 4 1582 5141 94 16 34 chr3 130744540 130745297 -28854486 + Lx LINE L1 5873 6615 -39 4 1582 5222 122 26 3 chr3 130745299 130746078 -28853705 - L1_Mm LINE L1 -36 5847 5051 4 1582 225 209 0 0 chr3 130746608 130746651 -28853132 + B4A SINE B4 207 249 -43 4 1582 369 0 0 0 chr3 130747472 130747513 -28852270 + (TG)n Simple_repeat Simple_repeat 2 42 0 4 1582 933 71 0 0 chr3 130747912 130748038 -28851745 + B1_Mus1 SINE Alu 21 146 -2 4 1582 186 71 0 0 chr3 130748039 130748067 -28851716 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 4 1582 334 247 67 21 chr3 130748483 130748577 -28851206 - L1ME3 LINE L1 -161 6012 5907 4 1582 344 291 76 76 chr3 130748582 130748753 -28851030 - MLT1H LTR MaLR -10 539 314 4 1582 222 267 17 0 chr3 130749877 130749937 -28849846 + (CA)n Simple_repeat Simple_repeat 2 62 0 4 1582 527 236 16 13 chr3 130749944 130750265 -28849518 + (CATATA)n Simple_repeat Simple_repeat 1 322 0 4 1582 320 314 0 0 chr3 130750272 130750358 -28849425 + (CA)n Simple_repeat Simple_repeat 1 86 0 4 1582 974 136 209 0 chr3 130750491 130750668 -28849115 + B3 SINE B2 2 215 -1 4 1582 1212 211 57 7 chr3 130751157 130751457 -28848326 + ORR1D2 LTR MaLR 54 368 -2 4 1582 778 175 0 21 chr3 130752271 130752411 -28847372 + B1_Mur2 SINE Alu 12 148 -1 4 1582 829 146 238 6 chr3 130752710 130752882 -28846901 - B3 SINE B2 -3 213 2 4 1582 1189 261 74 12 chr3 130752980 130753317 -28846466 - ORR1E LTR MaLR 0 359 2 4 1582 1265 225 33 143 chr3 130755975 130756401 -28843382 - MTE2b LTR MaLR 0 379 1 4 1582 489 302 0 0 chr3 130756429 130756548 -28843235 + PB1 SINE Alu 1 119 -8 4 1582 634 320 22 43 chr3 130756563 130756841 -28842942 + B4A SINE B4 1 272 -20 4 1582 233 326 124 35 chr3 130757555 130757781 -28842002 + L2 LINE L2 1270 1515 -1904 4 1582 37 0 0 0 chr3 130757874 130757911 -28841872 + AT_rich Low_complexity Low_complexity 1 37 0 4 1582 363 241 24 0 chr3 130758440 130758523 -28841260 - MTD LTR MaLR -24 395 311 4 1582 198 0 0 0 chr3 130758696 130758718 -28841065 + (TG)n Simple_repeat Simple_repeat 1 22 0 4 1582 526 302 46 13 chr3 130758724 130758875 -28840908 - RSINE1 SINE B4 -2 163 8 4 1582 869 149 6 45 chr3 130759508 130759684 -28840099 - URR1A DNA MER1_type 0 226 58 4 1582 216 67 0 0 chr3 130760218 130760248 -28839535 + (TTGG)n Simple_repeat Simple_repeat 2 31 0 4 1582 1669 152 10 13 chr3 130760284 130760590 -28839193 + ORR1B2 LTR MaLR 63 367 0 4 1582 27 49 0 0 chr3 130761638 130761679 -28838104 + AT_rich Low_complexity Low_complexity 1 41 0 4 1582 342 0 0 0 chr3 130761679 130761717 -28838066 + (TG)n Simple_repeat Simple_repeat 1 38 0 4 1582 1124 191 5 0 chr3 130761720 130761929 -28837854 + B3 SINE B2 6 215 -1 4 1582 577 225 30 53 chr3 130761951 130762120 -28837663 - RSINE1 SINE B4 0 165 1 4 1582 1028 189 51 19 chr3 130762125 130762341 -28837442 - URR1B DNA MER1_type 0 225 3 4 1582 200 59 0 29 chr3 130762433 130762468 -28837315 + (CAAAAA)n Simple_repeat Simple_repeat 2 35 0 4 1582 374 0 0 21 chr3 130763348 130763395 -28836388 + (CA)n Simple_repeat Simple_repeat 2 47 0 4 1582 601 290 0 0 chr3 130763431 130763569 -28836214 - ID_B1 SINE B4 -9 215 78 4 1582 529 322 29 5 chr3 130764082 130764288 -28835495 + MLT2C1 LTR ERVL 1 211 -186 4 1582 846 242 13 83 chr3 130765077 130765307 -28834476 + B3 SINE B2 3 216 0 4 1582 1549 42 10 5 chr3 130765345 130765537 -28834246 + B2_Mm1t SINE B2 1 193 0 4 1582 26 0 0 0 chr3 130765597 130765623 -28834160 + AT_rich Low_complexity Low_complexity 1 26 0 4 1582 357 296 106 45 chr3 130765639 130765837 -28833946 - MIR SINE MIR -30 232 23 4 1582 845 249 150 20 chr3 130765943 130766189 -28833594 + B4A SINE B4 3 280 -12 4 1582 1096 212 165 56 chr3 130766568 130766918 -28832865 - RMER15 LTR ERVL -113 462 64 4 1582 1353 229 35 85 chr3 130766918 130767105 -28832678 + ORR1C2 LTR MaLR 4 166 -218 4 1582 1229 85 6 0 chr3 130767105 130767281 -28832502 + (TC)n Simple_repeat Simple_repeat 2 178 0 4 1582 1353 229 35 85 chr3 130767281 130767494 -28832289 + ORR1C2 LTR MaLR 167 384 0 4 1582 1096 212 165 56 chr3 130767494 130767537 -28832246 - RMER15 LTR ERVL -512 63 26 4 1582 330 26 0 0 chr3 130767608 130767647 -28832136 + (CA)n Simple_repeat Simple_repeat 2 40 0 4 1582 431 221 35 0 chr3 130767670 130767756 -28832027 + PB1D10 SINE Alu 15 103 -14 4 1582 876 20 0 0 chr3 130767763 130767865 -28831918 + (GGAGA)n Simple_repeat Simple_repeat 3 104 0 4 1582 926 84 130 0 chr3 130768425 130768556 -28831227 + B1_Mus1 SINE Alu 1 148 0 4 1582 35 54 0 0 chr3 130768603 130768659 -28831124 + AT_rich Low_complexity Low_complexity 1 56 0 4 1582 264 328 0 9 chr3 130768693 130768807 -28830976 + MER63B DNA AcHobo 136 248 -188 4 1582 255 364 27 0 chr3 130768847 130768957 -28830826 + MER63B DNA AcHobo 324 436 0 4 1582 203 171 0 24 chr3 130769873 130769915 -28829868 + CT-rich Low_complexity Low_complexity 2 42 0 4 1582 1084 95 10 0 chr3 130769959 130770256 -28829527 + (TG)n Simple_repeat Simple_repeat 1 300 0 4 1582 619 274 5 24 chr3 130770303 130770509 -28829274 - B4A SINE B4 -90 202 1 4 1582 189 0 0 0 chr3 130771965 130771986 -28827797 + (A)n Simple_repeat Simple_repeat 1 21 0 4 1582 1117 68 7 7 chr3 130771986 130772133 -28827650 + B1_Mus1 SINE Alu 1 147 -1 4 1582 498 33 0 0 chr3 130773013 130773073 -28826710 + (TG)n Simple_repeat Simple_repeat 1 60 0 4 1582 232 315 0 0 chr3 130773884 130773938 -28825845 - MIRm SINE MIR -116 160 107 4 1582 1049 82 0 0 chr3 130773942 130774076 -28825707 + B1_Mus1 SINE Alu 3 136 -12 4 1582 1116 116 0 0 chr3 130774076 130774248 -28825535 + (GAA)n Simple_repeat Simple_repeat 1 172 0 4 1582 817 121 242 0 chr3 130774248 130774405 -28825378 + URR1A DNA MER1_type 1 195 -31 5 1582 588 84 0 0 chr3 130774545 130774628 -28825155 + (TA)n Simple_repeat Simple_repeat 2 84 0 5 1582 245 322 126 0 chr3 130774961 130775048 -28824735 + PB1D7 SINE Alu 22 119 -1 5 1582 435 36 0 0 chr3 130775078 130775133 -28824650 + L1Md_F3 LINE L1 6510 6564 -20 5 1582 834 11 0 0 chr3 130775133 130775228 -28824555 + (GAA)n Simple_repeat Simple_repeat 2 96 0 5 1582 315 85 0 0 chr3 130776541 130776588 -28823195 + (CAAAAA)n Simple_repeat Simple_repeat 2 48 0 5 1582 518 275 56 6 chr3 130776646 130776825 -28822958 + B3A SINE B2 9 196 -2 5 1582 216 271 34 0 chr3 130776854 130776913 -28822870 + PB1 SINE Alu 18 78 -49 5 1582 180 0 0 0 chr3 130776924 130776944 -28822839 + (TAA)n Simple_repeat Simple_repeat 1 20 0 5 1582 443 242 70 0 chr3 130777062 130777190 -28822593 + RSINE1 SINE B4 16 152 -13 5 1582 1820 211 49 20 chr3 130777193 130777599 -28822184 + MTD LTR MaLR 1 418 -1 5 1582 909 128 0 13 chr3 130777723 130777873 -28821910 - L1Md_F2 LINE L1 -12 6570 6423 5 1582 432 0 0 0 chr3 130777910 130777958 -28821825 + (CA)n Simple_repeat Simple_repeat 2 49 0 5 1582 906 232 36 55 chr3 130778010 130778229 -28821554 + B3 SINE B2 2 216 0 5 1582 446 0 19 0 chr3 130778389 130778443 -28821340 + (TAGA)n Simple_repeat Simple_repeat 3 57 0 5 1582 521 346 32 5 chr3 130778629 130778815 -28820968 + MER82 DNA MER2_type 48 238 -415 5 1582 349 171 90 110 chr3 130779640 130779785 -28819998 - RLTR15 LTR ERVK -1 358 217 5 1582 1397 75 27 0 chr3 130779803 130779991 -28819792 + B2_Mm1a SINE B2 1 193 0 5 1582 28 0 0 0 chr3 130780007 130780035 -28819748 + AT_rich Low_complexity Low_complexity 1 28 0 5 1582 547 273 34 34 chr3 130780039 130780244 -28819539 - RLTR15 LTR ERVK -154 205 1 5 1582 929 211 36 10 chr3 130782765 130782961 -28816822 + B3 SINE B2 1 201 -15 5 1582 626 48 18 37 chr3 130782996 130783105 -28816678 + (GGAA)n Simple_repeat Simple_repeat 4 110 0 5 1582 446 33 17 0 chr3 130783141 130783201 -28816582 + (GAAAA)n Simple_repeat Simple_repeat 4 64 0 5 1582 942 77 58 0 chr3 130783201 130783357 -28816426 + (GGGGA)n Simple_repeat Simple_repeat 2 166 0 5 1582 917 225 31 5 chr3 130783368 130783560 -28816223 + B3 SINE B2 5 201 -15 5 1582 1476 65 16 0 chr3 130783635 130783820 -28815963 + B2_Mm2 SINE B2 1 188 -7 5 1582 266 0 29 0 chr3 130783837 130783871 -28815912 + (CAAA)n Simple_repeat Simple_repeat 4 38 0 5 1582 288 0 0 0 chr3 130784161 130784193 -28815590 + (TG)n Simple_repeat Simple_repeat 1 32 0 5 1582 295 303 78 28 chr3 130784530 130784675 -28815108 - MIRm SINE MIR -103 165 14 5 1582 562 160 24 72 chr3 130784765 130784890 -28814893 - B1F2 SINE Alu 0 149 25 5 1582 1486 55 16 0 chr3 130784942 130785125 -28814658 + B2_Mm2 SINE B2 2 187 -8 5 1582 396 59 0 0 chr3 130785183 130785234 -28814549 + (CA)n Simple_repeat Simple_repeat 1 51 0 5 1582 186 43 0 0 chr3 130785799 130785822 -28813961 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 5 1582 1054 82 0 70 chr3 130785824 130785982 -28813801 + B1_Mus1 SINE Alu 2 148 0 5 1582 739 171 57 0 chr3 130786190 130786330 -28813453 - B1_Mur3 SINE Alu -1 148 1 5 1582 1301 20 0 0 chr3 130786347 130786494 -28813289 - B1_Mus2 SINE Alu 0 147 1 5 1582 344 325 158 10 chr3 130786513 130786715 -28813068 + L1MC LINE L1 5318 5549 -2333 5 1582 252 0 0 0 chr3 130787245 130787273 -28812510 + (TG)n Simple_repeat Simple_repeat 1 28 0 5 1582 304 213 8 8 chr3 130787317 130787440 -28812343 + (TG)n Simple_repeat Simple_repeat 2 124 0 5 1582 228 135 0 0 chr3 130788680 130788717 -28811066 + (T)n Simple_repeat Simple_repeat 1 37 0 5 1582 342 0 0 0 chr3 130789587 130789625 -28810158 + (CA)n Simple_repeat Simple_repeat 1 38 0 5 1582 324 0 0 0 chr3 130789674 130789710 -28810073 + (TG)n Simple_repeat Simple_repeat 2 37 0 5 1582 261 83 0 0 chr3 130790039 130790075 -28809708 + (CA)n Simple_repeat Simple_repeat 1 36 0 5 1582 402 21 0 0 chr3 130790889 130790936 -28808847 + (TTAG)n Simple_repeat Simple_repeat 3 49 0 5 1582 2431 77 49 0 chr3 130791482 130791840 -28807943 - L1_Mus3 LINE L1 -638 5928 5555 5 1582 3155 74 75 43 chr3 130791847 130792573 -28807210 + L1_Mus3 LINE L1 5915 6566 0 5 1582 236 330 0 50 chr3 130792676 130792775 -28807008 - MER113 DNA MER1_type -395 126 33 5 1582 477 208 39 55 chr3 130792925 130793052 -28806731 + B1F SINE Alu 7 131 -18 5 1582 297 339 67 17 chr3 130793162 130793282 -28806501 - B1_Mm SINE Alu -21 126 1 5 1582 706 284 70 16 chr3 130793282 130793364 -28806419 - B4 SINE B4 -198 94 3 5 1582 213 229 15 76 chr3 130793528 130793594 -28806189 - B4 SINE B4 -214 78 17 5 1582 854 170 7 7 chr3 130793642 130793784 -28805999 + B1_Mus1 SINE Alu 1 142 -6 5 1582 714 229 43 48 chr3 130793840 130794028 -28805755 - B3A SINE B2 -11 187 1 5 1582 1119 169 134 18 chr3 130794050 130794334 -28805449 - Lx9 LINE L1 -7 7637 7321 5 1582 402 321 101 74 chr3 130794511 130794958 -28804825 - L2a LINE L2 -10 3416 2958 5 1582 274 321 202 22 chr3 130794981 130795338 -28804445 - L2a LINE L2 -550 2869 2449 5 1582 377 293 0 20 chr3 130795346 130795447 -28804336 - PB1D10 SINE Alu -12 105 7 5 1582 220 266 432 10 chr3 130795454 130795743 -28804040 - L2a LINE L2 -950 2469 2059 5 1582 31 0 0 0 chr3 130795906 130795937 -28803846 + GC_rich Low_complexity Low_complexity 1 31 0 5 1582 306 0 0 0 chr3 130796023 130796057 -28803726 + (CAGT)n Simple_repeat Simple_repeat 2 35 0 5 1582 535 92 23 0 chr3 130796096 130796183 -28803600 + (TA)n Simple_repeat Simple_repeat 2 90 0 5 1582 1121 52 0 0 chr3 130796199 130796334 -28803449 - B1_Mus1 SINE Alu -13 135 1 5 1582 1280 106 32 5 chr3 130796527 130796716 -28803067 - B2_Mm2 SINE B2 0 195 2 5 1582 321 26 0 0 chr3 130798246 130798284 -28801499 + (TG)n Simple_repeat Simple_repeat 2 39 0 5 1582 1083 82 0 52 chr3 130798292 130798446 -28801337 - B1_Mus1 SINE Alu -2 146 1 5 1582 221 0 0 33 chr3 130799515 130799545 -28800238 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 5 1582 1208 29 0 0 chr3 130799545 130799682 -28800101 - B1_Mm SINE Alu -10 137 1 5 1582 344 231 15 0 chr3 130799702 130799767 -28800016 - B4A SINE B4 -196 96 31 5 1582 21 36 0 0 chr3 130799798 130799826 -28799957 + AT_rich Low_complexity Low_complexity 1 28 0 5 1582 1066 234 149 6 chr3 130799829 130800152 -28799631 + ORR1D2 LTR MaLR 1 369 -1 5 1582 203 188 21 0 chr3 130800340 130800388 -28799395 + CT-rich Low_complexity Low_complexity 6 54 0 5 1582 272 276 13 0 chr3 130800408 130800484 -28799299 - PB1D10 SINE Alu -39 78 2 5 1582 221 95 0 45 chr3 130800522 130800550 -28799233 + (TTTTC)n Simple_repeat Simple_repeat 1 28 0 5 1582 1236 47 0 0 chr3 130800550 130800698 -28799085 - B1_Mus1 SINE Alu 0 148 1 5 1582 221 95 0 45 chr3 130800698 130800713 -28799070 + (TTTTC)n Simple_repeat Simple_repeat 3 15 0 5 1582 401 301 35 26 chr3 130801176 130801292 -28798491 + PB1D10 SINE Alu 1 117 0 5 1582 344 211 53 0 chr3 130801414 130801490 -28798293 + MER2 DNA MER2_type 86 165 -180 5 1582 690 289 44 31 chr3 130801539 130801857 -28797926 + L1_Rod LINE L1 3852 4173 -1674 5 1582 3213 38 30 0 chr3 130801858 130802252 -28797531 - RLTR10C LTR ERVK -30 406 1 5 1582 231 276 148 8 chr3 130802334 130802462 -28797321 + L1MA4A LINE L1 4291 4436 -1707 5 1582 1128 52 0 0 chr3 130802465 130802600 -28797183 + B1_Mus1 SINE Alu 2 136 -12 5 1582 920 128 0 14 chr3 130802660 130802803 -28796980 - B1_Mur4 SINE Alu -8 142 2 5 1582 715 292 122 39 chr3 130802823 130803743 -28796040 + L1MA4A LINE L1 5021 6021 -279 5 1582 1641 152 94 0 chr3 130803897 130804226 -28795557 + RMER10A LTR ERVL 1 360 -82 5 1582 1260 27 0 7 chr3 130804247 130804395 -28795388 + B1_Mus1 SINE Alu 2 148 0 5 1582 471 78 0 0 chr3 130804429 130804493 -28795290 + (TC)n Simple_repeat Simple_repeat 1 64 0 5 1582 1031 144 66 0 chr3 130804892 130805059 -28794724 + URR1B DNA MER1_type 48 225 0 5 1582 261 0 0 0 chr3 130805515 130805544 -28794239 + (T)n Simple_repeat Simple_repeat 1 29 0 5 1582 219 114 0 0 chr3 130807437 130807472 -28792311 + (T)n Simple_repeat Simple_repeat 1 35 0 5 1582 1384 91 11 0 chr3 130807497 130807684 -28792099 - B2_Mm1t SINE B2 -3 190 2 5 1582 1178 68 0 0 chr3 130807687 130807833 -28791950 - B1_Mm SINE Alu 0 147 2 5 1582 25 51 0 0 chr3 130809026 130809065 -28790718 + GC_rich Low_complexity Low_complexity 1 39 0 5 1583 383 68 0 17 chr3 130811715 130811775 -28788008 + (TA)n Simple_repeat Simple_repeat 2 60 0 5 1583 360 43 0 0 chr3 130813498 130813544 -28786239 + (TG)n Simple_repeat Simple_repeat 2 47 0 5 1583 180 0 0 0 chr3 130813899 130813919 -28785864 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 5 1583 258 314 0 0 chr3 130817284 130817370 -28782413 + (CA)n Simple_repeat Simple_repeat 1 86 0 5 1583 33 0 0 0 chr3 130818736 130818769 -28781014 + AT_rich Low_complexity Low_complexity 1 33 0 5 1583 219 218 0 0 chr3 130820357 130820412 -28779371 + (TG)n Simple_repeat Simple_repeat 1 55 0 5 1583 533 137 83 10 chr3 130822951 130823047 -28776736 - PB1D9 SINE Alu 0 120 18 5 1583 1260 41 0 0 chr3 130823174 130823320 -28776463 - B1_Mus2 SINE Alu 0 147 2 5 1583 427 220 29 25 chr3 130823705 130823809 -28775974 + PB1 SINE Alu 3 106 -21 5 1583 432 0 0 0 chr3 130823813 130823861 -28775922 + (TG)n Simple_repeat Simple_repeat 2 49 0 5 1583 21 0 0 0 chr3 130823905 130823926 -28775857 + AT_rich Low_complexity Low_complexity 1 21 0 5 1583 593 221 29 58 chr3 130823974 130824113 -28775670 - RSINE1 SINE B4 -28 137 3 5 1583 368 248 66 33 chr3 130824808 130824929 -28774854 + PB1 SINE Alu 1 125 -2 5 1583 289 219 55 0 chr3 130824941 130825014 -28774769 + ID4_ SINE ID 2 78 -5 5 1583 588 259 33 40 chr3 130825187 130825406 -28774377 - B3A SINE B2 -23 193 4 6 1583 207 0 0 0 chr3 130826516 130826539 -28773244 + (A)n Simple_repeat Simple_repeat 1 23 0 6 1583 247 282 0 0 chr3 130826815 130826886 -28772897 + A-rich Low_complexity Low_complexity 1 71 0 6 1583 256 119 14 29 chr3 130827377 130827446 -28772337 + T-rich Low_complexity Low_complexity 2 69 0 6 1583 189 269 0 0 chr3 130828049 130828127 -28771656 + (TATATG)n Simple_repeat Simple_repeat 5 82 0 6 1583 801 261 24 6 chr3 130828135 130828301 -28771482 - B3A SINE B2 -13 185 17 6 1583 523 45 0 0 chr3 130829129 130829195 -28770588 - B1_Mus2 SINE Alu -81 66 1 6 1583 1149 98 92 0 chr3 130829203 130829377 -28770406 - B2_Mm2 SINE B2 -5 190 1 6 1583 320 347 24 18 chr3 130829643 130829813 -28769970 - MIRb SINE MIR -51 217 47 6 1583 21 0 0 0 chr3 130830093 130830114 -28769669 + AT_rich Low_complexity Low_complexity 1 21 0 6 1583 1234 47 0 0 chr3 130830124 130830272 -28769511 - B1_Mus1 SINE Alu 0 148 1 6 1583 217 196 19 19 chr3 130830688 130830740 -28769043 + CT-rich Low_complexity Low_complexity 3 54 0 6 1583 324 0 0 0 chr3 130830762 130830798 -28768985 + (CA)n Simple_repeat Simple_repeat 2 37 0 6 1583 260 268 37 62 chr3 130831215 130831335 -28768448 - PB1D10 SINE Alu 0 127 4 6 1583 1171 62 0 0 chr3 130831944 130832090 -28767693 - B1_Mm SINE Alu -1 146 1 6 1583 198 103 0 0 chr3 130832158 130832187 -28767596 + (CTG)n Simple_repeat Simple_repeat 1 29 0 6 1583 794 208 86 16 chr3 130832200 130832386 -28767397 + B3 SINE B2 1 199 -17 6 1583 297 0 0 0 chr3 130832516 130832549 -28767234 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 6 1583 207 182 0 0 chr3 130832837 130832870 -28766913 + A-rich Low_complexity Low_complexity 3 35 0 6 1583 886 206 108 0 chr3 130833008 130833202 -28766581 + B3 SINE B2 2 216 0 6 1583 1373 38 16 42 chr3 130833548 130833559 -28766224 - B2_Mm2 SINE B2 -9 186 174 6 1583 692 54 11 0 chr3 130833559 130833652 -28766131 + (TTTC)n Simple_repeat Simple_repeat 3 96 0 6 1583 1070 75 7 27 chr3 130833653 130833803 -28765980 - B1_Mus1 SINE Alu -1 147 1 6 1583 666 0 0 0 chr3 130833809 130833883 -28765900 + (TTCCC)n Simple_repeat Simple_repeat 2 75 0 6 1583 1373 38 16 42 chr3 130833883 130834053 -28765730 - B2_Mm2 SINE B2 -26 169 1 6 1583 218 274 24 0 chr3 130834439 130834607 -28765176 + (CCTAA)n Simple_repeat Simple_repeat 2 173 0 6 1583 207 71 71 0 chr3 130835034 130835076 -28764707 + (TTTG)n Simple_repeat Simple_repeat 1 45 0 6 1583 990 57 0 0 chr3 130835077 130835201 -28764582 - B1_Mus1 SINE Alu 0 148 25 6 1583 180 0 0 0 chr3 130835839 130835859 -28763924 + (TTG)n Simple_repeat Simple_repeat 2 21 0 6 1583 432 0 0 0 chr3 130836337 130836385 -28763398 + (TCCC)n Simple_repeat Simple_repeat 2 49 0 6 1583 517 292 38 19 chr3 130836388 130836601 -28763182 - L1MA4A LINE L1 -325 5978 5762 6 1583 769 136 0 15 chr3 130836754 130836888 -28762895 + RMER17C LTR ERVK 1 132 -278 6 1583 220 330 121 35 chr3 130837206 130837438 -28762345 + L3b LINE CR1 110 361 -121 6 1583 204 125 0 0 chr3 130837505 130837537 -28762246 + (C)n Simple_repeat Simple_repeat 1 32 0 6 1583 510 17 0 0 chr3 130837697 130837756 -28762027 + (CA)n Simple_repeat Simple_repeat 1 59 0 6 1583 224 163 20 0 chr3 130838978 130839027 -28760756 + T-rich Low_complexity Low_complexity 1 50 0 6 1583 356 287 0 79 chr3 130839038 130839178 -28760605 + RMER1C Other Other 1199 1327 -15 6 1583 351 0 0 0 chr3 130839877 130839916 -28759867 + (TC)n Simple_repeat Simple_repeat 2 40 0 6 1583 28 0 0 0 chr3 130841087 130841115 -28758668 + AT_rich Low_complexity Low_complexity 1 28 0 6 1583 1020 80 51 0 chr3 130843347 130843484 -28756299 + B1_Mm SINE Alu 2 145 -2 6 1583 243 0 0 0 chr3 130843536 130843563 -28756220 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 6 1583 1222 87 0 0 chr3 130843564 130843725 -28756058 - B2_Mm2 SINE B2 -34 161 1 6 1583 616 232 34 27 chr3 130843822 130843968 -28755815 - B3 SINE B2 -41 175 29 6 1583 570 29 0 0 chr3 130844751 130844819 -28754964 + (TCCC)n Simple_repeat Simple_repeat 3 70 0 6 1583 369 0 0 0 chr3 130844819 130844860 -28754923 + (TTTC)n Simple_repeat Simple_repeat 3 43 0 6 1583 311 353 117 10 chr3 130846948 130847154 -28752629 + MIRb SINE MIR 7 234 -34 6 1583 315 0 0 0 chr3 130847565 130847600 -28752183 + (TG)n Simple_repeat Simple_repeat 2 36 0 6 1583 1261 41 0 0 chr3 130848472 130848619 -28751164 + B1_Mm SINE Alu 1 147 0 6 1583 400 92 53 35 chr3 130849199 130849312 -28750471 + (TCTCTG)n Simple_repeat Simple_repeat 2 116 0 6 1583 459 0 0 0 chr3 130849315 130849366 -28750417 + (TG)n Simple_repeat Simple_repeat 2 52 0 6 1583 456 246 99 60 chr3 130849373 130849524 -28750259 - B4 SINE B4 -134 158 2 6 1583 904 151 191 21 chr3 130852592 130852781 -28747002 - URR1B DNA MER1_type 0 225 5 6 1583 376 218 0 171 chr3 130852990 130853095 -28746688 - RSINE1 SINE B4 0 165 79 6 1583 1047 29 88 0 chr3 130853937 130854073 -28745710 + B1_Mus1 SINE Alu 1 148 0 6 1583 244 250 29 14 chr3 130855648 130855717 -28744066 + L1M5 LINE L1 2732 2801 -3345 6 1583 605 155 0 8 chr3 130856215 130856345 -28743438 + (TG)n Simple_repeat Simple_repeat 1 129 0 6 1583 703 311 119 31 chr3 130856472 130856791 -28742992 + Charlie1a DNA MER1_type 5 351 -1104 6 1583 21 0 0 0 chr3 130857273 130857294 -28742489 + GC_rich Low_complexity Low_complexity 1 21 0 6 1583 756 99 0 0 chr3 130857872 130857983 -28741800 + (TTGG)n Simple_repeat Simple_repeat 2 112 0 6 1583 221 356 94 69 chr3 130858192 130858352 -28741431 + MIRm SINE MIR 4 167 -109 6 1583 342 0 0 0 chr3 130859854 130859892 -28739891 + (TTTA)n Simple_repeat Simple_repeat 1 38 0 6 1583 1547 212 80 68 chr3 130861536 130861950 -28737833 - MTD LTR MaLR 0 419 1 6 1583 678 215 21 7 chr3 130862037 130862182 -28737601 - B1_Mur1 SINE Alu -2 147 1 6 1583 421 204 15 0 chr3 130862670 130862807 -28736976 + (CA)n Simple_repeat Simple_repeat 2 140 0 6 1583 234 0 0 0 chr3 130863182 130863208 -28736575 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 6 1583 224 254 127 0 chr3 130865152 130865215 -28734568 + PB1D10 SINE Alu 1 71 -46 6 1583 385 235 151 18 chr3 130866409 130866587 -28733196 - L1MB5 LINE L1 -345 5967 5769 6 1583 886 157 15 22 chr3 130866632 130866826 -28732957 - B3 SINE B2 -5 190 1 6 1583 576 186 69 8 chr3 130866826 130866956 -28732827 - L1MB5 LINE L1 -477 5707 5570 6 1583 21 0 0 0 chr3 130867200 130867221 -28732562 + AT_rich Low_complexity Low_complexity 1 21 0 6 1583 579 29 0 0 chr3 130867327 130867396 -28732387 + (TC)n Simple_repeat Simple_repeat 1 69 0 6 1583 1239 77 0 6 chr3 130867397 130867567 -28732216 - B2_Mm2 SINE B2 -26 169 1 6 1583 481 271 72 68 chr3 130867976 130868213 -28731570 - RMER15 LTR ERVL 0 575 338 6 1583 237 299 90 58 chr3 130868273 130868429 -28731354 - RMER15 LTR ERVL -414 161 1 6 1583 227 302 126 21 chr3 130869826 130869958 -28729825 - MIRc SINE MIR -39 229 86 6 1583 422 193 67 11 chr3 130870483 130870572 -28729211 - B4A SINE B4 -3 289 196 6 1583 245 229 16 16 chr3 130870654 130870716 -28729067 - B4A SINE B4 -216 76 15 6 1583 918 213 10 47 chr3 130870788 130870980 -28728803 + B3 SINE B2 5 189 -27 6 1583 540 0 0 0 chr3 130870980 130871040 -28728743 + (TG)n Simple_repeat Simple_repeat 2 61 0 6 1583 291 378 40 47 chr3 130871053 130871203 -28728580 - RSINE1 SINE B4 -13 152 4 6 1583 205 184 26 0 chr3 130872668 130872706 -28727077 + CT-rich Low_complexity Low_complexity 5 43 0 6 1583 306 261 17 51 chr3 130872773 130872890 -28726893 - PB1D10 SINE Alu -3 114 2 6 1583 685 210 23 22 chr3 130873355 130873515 -28726268 - B3 SINE B2 -14 202 1 6 1583 247 282 28 0 chr3 130873808 130873879 -28725904 + ID4_ SINE ID 4 76 -7 6 1583 180 0 0 0 chr3 130874558 130874578 -28725205 + (C)n Simple_repeat Simple_repeat 1 20 0 6 1583 342 0 0 0 chr3 130874862 130874900 -28724883 + (TTG)n Simple_repeat Simple_repeat 2 39 0 6 1583 668 195 281 21 chr3 130875179 130875404 -28724379 - MTD LTR MaLR -14 405 108 6 1583 387 0 0 0 chr3 130876396 130876439 -28723344 + (CA)n Simple_repeat Simple_repeat 1 43 0 6 1583 1093 123 158 5 chr3 130876996 130877192 -28722591 - URR1A DNA MER1_type 0 226 1 6 1583 333 0 0 0 chr3 130877372 130877409 -28722374 + (TG)n Simple_repeat Simple_repeat 1 37 0 6 1583 338 297 202 8 chr3 130877764 130878002 -28721781 - B4A SINE B4 -4 288 5 6 1583 268 323 204 25 chr3 130878095 130878257 -28721526 + MLT1E2 LTR MaLR 220 410 -217 6 1583 246 321 75 9 chr3 130878268 130878375 -28721408 + MLT1E2 LTR MaLR 492 605 -49 6 1583 724 274 234 25 chr3 130879005 130879734 -28720049 + Charlie1a DNA MER1_type 512 1393 -62 6 1583 206 118 0 0 chr3 130879744 130879778 -28720005 + (T)n Simple_repeat Simple_repeat 1 34 0 6 1583 180 326 118 56 chr3 130880196 130880391 -28719392 - MIRb SINE MIR -22 246 40 6 1583 584 104 88 81 chr3 130882534 130882670 -28717113 - B1_Mur3 SINE Alu 0 149 13 6 1583 324 0 0 0 chr3 130882853 130882889 -28716894 + (TA)n Simple_repeat Simple_repeat 1 36 0 6 1583 405 0 0 0 chr3 130883688 130883733 -28716050 + (TG)n Simple_repeat Simple_repeat 2 46 0 6 1583 267 250 0 0 chr3 130885195 130885251 -28714532 - MamRep434 DNA TcMar 0 426 371 6 1583 262 143 0 0 chr3 130885516 130885558 -28714225 - L1MA8 LINE L1 -76 6215 6174 6 1583 660 45 0 0 chr3 130885724 130885812 -28713971 + (CA)n Simple_repeat Simple_repeat 2 89 0 6 1583 30 0 0 0 chr3 130885924 130885954 -28713829 + AT_rich Low_complexity Low_complexity 1 30 0 6 1583 183 42 0 0 chr3 130885954 130885978 -28713805 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 6 1583 1197 68 0 0 chr3 130885978 130886124 -28713659 - B1_Mus1 SINE Alu -2 146 1 6 1583 548 222 31 94 chr3 130886128 130886287 -28713496 - B1_Mur1 SINE Alu 0 149 1 7 1583 275 171 9 54 chr3 130886392 130886503 -28713280 + (TA)n Simple_repeat Simple_repeat 1 106 0 7 1583 457 308 121 53 chr3 130886524 130886730 -28713053 - B4A SINE B4 -71 221 2 7 1583 388 267 0 19 chr3 130886749 130886856 -28712927 - PB1D10 SINE Alu -1 116 12 7 1583 1096 319 83 40 chr3 130888096 130888651 -28711132 - Tigger7 DNA MER2_type -1879 612 34 7 1583 1396 68 5 35 chr3 130888708 130888906 -28710877 - B2_Mm2 SINE B2 -3 192 1 7 1583 433 244 0 0 chr3 130888926 130889008 -28710775 - ID4 SINE ID -1 82 1 7 1583 462 36 0 0 chr3 130889016 130889072 -28710711 + (CA)n Simple_repeat Simple_repeat 2 57 0 7 1583 458 149 229 21 chr3 130891276 130891372 -28708411 - URR1A DNA MER1_type -110 116 1 7 1583 186 43 0 0 chr3 130892169 130892192 -28707591 + (T)n Simple_repeat Simple_repeat 1 23 0 7 1583 213 121 0 0 chr3 130892677 130892710 -28707073 + (T)n Simple_repeat Simple_repeat 1 33 0 7 1583 1005 33 0 0 chr3 130894718 130894839 -28704944 + (TTTTC)n Simple_repeat Simple_repeat 2 122 0 7 1583 216 0 0 0 chr3 130894932 130894956 -28704827 + (CA)n Simple_repeat Simple_repeat 1 24 0 7 1583 1412 65 38 5 chr3 130896581 130896766 -28703017 + B2_Mm2 SINE B2 2 192 -3 7 1583 614 255 35 41 chr3 130896895 130897067 -28702716 + B4A SINE B4 2 172 -120 7 1583 198 0 0 0 chr3 130897148 130897170 -28702613 + (CA)n Simple_repeat Simple_repeat 1 22 0 7 1583 204 273 0 0 chr3 130897479 130897523 -28702260 + C-rich Low_complexity Low_complexity 1 44 0 7 1583 236 77 26 0 chr3 130897802 130897841 -28701942 + (TG)n Simple_repeat Simple_repeat 1 40 0 7 1583 186 315 154 18 chr3 130897978 130898088 -28701695 - L2a LINE L2 -18 3408 3284 7 1583 1020 52 82 7 chr3 130898768 130898903 -28700880 + B1_Mus2 SINE Alu 2 146 -1 7 1583 25 51 0 0 chr3 130900153 130900192 -28699591 + AT_rich Low_complexity Low_complexity 1 39 0 7 1583 330 224 0 0 chr3 130900780 130900865 -28698918 + (TATATG)n Simple_repeat Simple_repeat 2 86 0 7 1583 322 27 0 0 chr3 130900866 130900903 -28698880 - HAL1-3A_ME LINE L1 -847 2011 1975 7 1583 180 97 0 0 chr3 130901024 130901055 -28698728 + (TTA)n Simple_repeat Simple_repeat 2 32 0 7 1583 659 281 29 0 chr3 130901079 130901218 -28698565 + RSINE1 SINE B4 8 150 -15 7 1583 369 0 0 0 chr3 130901220 130901261 -28698522 + (CA)n Simple_repeat Simple_repeat 2 42 0 7 1583 27 0 0 0 chr3 130901261 130901288 -28698495 + AT_rich Low_complexity Low_complexity 1 27 0 7 1583 1539 60 0 0 chr3 130901291 130901476 -28698307 - B2_Mm1a SINE B2 -8 185 1 7 1583 22 0 0 0 chr3 130902194 130902216 -28697567 + AT_rich Low_complexity Low_complexity 1 22 0 7 1583 1676 26 0 0 chr3 130902314 130902505 -28697278 + B2_Mm1a SINE B2 2 192 -1 7 1583 221 0 0 33 chr3 130904142 130904172 -28695611 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 7 1583 1155 52 0 0 chr3 130904346 130904482 -28695301 + B1_Mus2 SINE Alu 1 136 -11 7 1583 236 325 12 24 chr3 130904609 130904694 -28695089 - MLT1A1 LTR MaLR -44 364 281 7 1583 216 200 0 0 chr3 130906605 130906655 -28693128 + GA-rich Low_complexity Low_complexity 1 50 0 7 1583 210 356 46 0 chr3 130908755 130908842 -28690941 + L2 LINE L2 2763 2853 -566 7 1583 315 281 31 4 chr3 130909369 130909472 -28690311 - L1MEg LINE L1 -4131 2502 2395 7 1583 308 315 19 39 chr3 130909764 130909919 -28689864 + YREP_Mm Unknown Unknown 141 292 -1520 7 1583 877 165 25 12 chr3 130909800 130909960 -28689823 - ID_B1 SINE B4 0 224 63 7 1583 495 0 0 0 chr3 130910697 130910752 -28689031 + (TC)n Simple_repeat Simple_repeat 1 55 0 7 1583 190 0 0 62 chr3 130910784 130910816 -28688967 + (CCA)n Simple_repeat Simple_repeat 3 32 0 7 1583 727 93 178 0 chr3 130911132 130911250 -28688533 + B1_Mus1 SINE Alu 1 139 -9 7 1583 969 147 167 5 chr3 130911804 130911996 -28687787 + URR1B DNA MER1_type 3 225 0 7 1583 887 175 11 0 chr3 130912271 130912448 -28687335 + CT-rich Low_complexity Low_complexity 2 180 0 7 1583 8775 2 0 0 chr3 130912457 130913872 -28685911 - L1Md_A LINE L1 0 6582 5168 7 1583 694 303 105 55 chr3 130914130 130914517 -28685266 - L1MA5 LINE L1 -279 6021 5609 7 1583 1152 61 7 39 chr3 130914517 130914670 -28685113 - B1_Mus1 SINE Alu 0 148 1 7 1583 694 303 105 55 chr3 130914670 130914883 -28684900 - L1MA5 LINE L1 -692 5608 5391 7 1583 570 15 0 0 chr3 130914883 130914950 -28684833 + (TTTC)n Simple_repeat Simple_repeat 2 68 0 7 1583 1450 67 0 0 chr3 130914950 130915129 -28684654 - B2_Mm1t SINE B2 -12 181 3 7 1583 555 314 133 49 chr3 130915129 130915204 -28684579 - L1MA5 LINE L1 -923 5374 5290 7 1583 525 261 17 0 chr3 130915280 130915399 -28684384 - B3A SINE B2 -30 168 48 7 1583 489 295 202 2 chr3 130915440 130915841 -28683942 - L1MA5 LINE L1 -868 5275 4795 7 1583 1104 224 217 3 chr3 130918413 130918717 -28681066 - ORR1D2 LTR MaLR -1 369 1 7 1583 228 135 0 0 chr3 130918829 130918866 -28680917 + MER2B DNA MER2_type 76 112 -224 7 1583 488 313 18 18 chr3 130918978 130919147 -28680636 + MER2 DNA MER2_type 97 265 -80 7 1583 618 210 89 36 chr3 130919343 130919511 -28680272 + B3 SINE B2 35 211 -5 7 1583 233 293 11 99 chr3 130919766 130919822 -28679961 - ID4_ SINE ID 0 83 31 7 1583 1403 201 186 17 chr3 130919822 130920177 -28679606 + MTD LTR MaLR 5 419 0 7 1583 233 293 11 99 chr3 130920177 130920211 -28679572 - ID4_ SINE ID -53 30 1 7 1583 635 251 108 36 chr3 130920251 130920445 -28679338 + B3 SINE B2 1 208 -8 7 1583 1303 156 9 22 chr3 130921746 130921975 -28677808 + URR1A DNA MER1_type 1 226 0 7 1583 226 215 12 25 chr3 130926543 130926624 -28673159 + T-rich Low_complexity Low_complexity 2 81 0 7 1583 276 149 0 0 chr3 130926704 130926751 -28673032 + (T)n Simple_repeat Simple_repeat 1 47 0 7 1583 21 0 0 0 chr3 130927101 130927122 -28672661 + AT_rich Low_complexity Low_complexity 1 21 0 7 1583 639 250 177 26 chr3 130927747 130927973 -28671810 - L3b LINE CR1 -218 264 5 7 1583 561 242 64 25 chr3 130929596 130929753 -28670030 - RSINE1 SINE B4 0 165 3 7 1583 484 194 11 21 chr3 130929761 130929856 -28669927 - PB1D10 SINE Alu -4 113 20 7 1583 3008 35 32 13 chr3 130930045 130930420 -28669363 + L1Md_F2 LINE L1 6201 6582 0 7 1583 913 234 10 30 chr3 130930647 130930850 -28668933 - B3 SINE B2 -14 202 4 7 1583 555 203 127 13 chr3 130931151 130931301 -28668482 - B3A SINE B2 -18 180 14 7 1583 219 36 0 0 chr3 130931301 130931329 -28668454 + (TCTCTG)n Simple_repeat Simple_repeat 2 29 0 7 1583 372 43 0 0 chr3 130931336 130931382 -28668401 + (TCCC)n Simple_repeat Simple_repeat 3 48 0 7 1583 365 286 10 0 chr3 130931399 130931412 -28668371 - RSINE1 SINE B4 -65 100 2 7 1583 668 59 0 0 chr3 130931412 130931497 -28668286 - B2_Mm2 SINE B2 -110 85 1 7 1583 231 245 104 58 chr3 130931546 130931719 -28668064 + RMER17C LTR ERVK 132 312 -98 7 1583 418 266 109 0 chr3 130931937 130932065 -28667718 + B1F2 SINE Alu 1 142 -7 7 1583 1317 101 32 0 chr3 130932407 130932596 -28667187 - B2_Mm2 SINE B2 0 195 1 7 1583 474 251 117 46 chr3 130933070 130933266 -28666517 + B3 SINE B2 7 216 0 7 1583 1181 61 0 26 chr3 130933904 130934056 -28665727 + B1_Mus1 SINE Alu 1 148 0 7 1583 372 290 272 16 chr3 130934103 130934268 -28665515 + ID_B1 SINE B4 6 212 -12 7 1583 432 283 28 19 chr3 130934663 130934771 -28665012 - PB1D10 SINE Alu -8 109 1 7 1583 216 300 29 0 chr3 130935918 130935988 -28663795 + MIRb SINE MIR 51 122 -146 7 1583 477 0 0 0 chr3 130936211 130936264 -28663519 + (CA)n Simple_repeat Simple_repeat 1 53 0 7 1583 283 273 45 11 chr3 130937726 130937815 -28661968 + L1MD1 LINE L1 6081 6172 -70 7 1583 233 296 76 46 chr3 130937928 130938059 -28661724 + MLT1A1 LTR MaLR 1 135 -273 7 1583 283 303 0 76 chr3 130938218 130938336 -28661447 + MLT1A1 LTR MaLR 297 405 -3 7 1583 447 230 0 36 chr3 130938947 130939114 -28660669 + (CATA)n Simple_repeat Simple_repeat 4 164 0 7 1583 306 0 0 0 chr3 130939346 130939380 -28660403 + (TAAA)n Simple_repeat Simple_repeat 4 37 0 7 1583 304 270 0 0 chr3 130939513 130939576 -28660207 - ID4 SINE ID -7 76 14 7 1583 335 0 0 68 chr3 130940716 130940775 -28659008 + (CAAAA)n Simple_repeat Simple_repeat 2 56 0 7 1584 290 26 26 0 chr3 130942454 130942493 -28657290 + (GGGA)n Simple_repeat Simple_repeat 4 43 0 7 1584 353 311 11 101 chr3 130942960 130943139 -28656644 + RSINE1 SINE B4 3 165 0 7 1584 520 148 19 0 chr3 130943139 130943247 -28656536 + (CA)n Simple_repeat Simple_repeat 1 110 0 7 1584 360 0 0 0 chr3 130943424 130943464 -28656319 + (TG)n Simple_repeat Simple_repeat 2 41 0 7 1584 284 281 22 33 chr3 130943492 130943584 -28656199 - B3 SINE B2 -123 93 3 7 1584 209 128 26 0 chr3 130944483 130944522 -28655261 + A-rich Low_complexity Low_complexity 1 40 0 7 1584 333 0 0 0 chr3 130944632 130944669 -28655114 + (CAAAA)n Simple_repeat Simple_repeat 2 38 0 7 1584 180 250 66 53 chr3 130945949 130946025 -28653758 + MIRm SINE MIR 28 104 -172 7 1584 22 35 0 0 chr3 130946582 130946611 -28653172 + AT_rich Low_complexity Low_complexity 1 29 0 7 1584 751 201 172 0 chr3 130946903 130947077 -28652706 - B3 SINE B2 -11 205 2 7 1584 219 36 0 0 chr3 130947889 130947917 -28651866 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 7 1584 297 0 0 0 chr3 130948598 130948631 -28651152 + (CA)n Simple_repeat Simple_repeat 2 34 0 7 1584 292 247 95 36 chr3 130949038 130949122 -28650661 + PB1D7 SINE Alu 19 107 -13 7 1584 1489 53 5 26 chr3 130950117 130950312 -28649471 + B2_Mm1a SINE B2 1 191 -2 7 1584 305 296 137 88 chr3 130950523 130950749 -28649034 + RMER20B LTR ERVK 99 335 -292 7 1584 1750 182 61 9 chr3 130950879 130951222 -28648561 + ORR1B2 LTR MaLR 7 367 0 8 1584 2473 170 114 73 chr3 130952022 130952612 -28647171 + RLTR18 LTR ERVK 3 616 0 8 1584 21 0 0 0 chr3 130952850 130952871 -28646912 + AT_rich Low_complexity Low_complexity 1 21 0 8 1584 434 314 17 0 chr3 130954082 130954200 -28645583 + MER68 LTR ERVL 2 121 -442 8 1584 508 326 85 24 chr3 130954288 130954536 -28645247 + MER68 LTR ERVL 244 506 -57 8 1584 2534 172 30 165 chr3 130956476 130957137 -28642646 + RMER15 LTR ERVL 4 575 0 8 1584 753 233 147 6 chr3 130957222 130957399 -28642384 + B4A SINE B4 20 221 -71 8 1584 203 222 0 22 chr3 130957445 130957491 -28642292 + MER5A DNA MER1_type 144 188 -1 8 1584 342 164 18 0 chr3 130958246 130958301 -28641482 + B3A SINE B2 2 57 -141 8 1584 986 279 67 0 chr3 130958432 130958686 -28641097 - MTE2b LTR MaLR -108 271 1 8 1584 1330 244 80 31 chr3 130958730 130958909 -28640874 - ORR1D2 LTR MaLR -27 343 145 8 1584 1388 161 9 4 chr3 130958909 130959134 -28640649 + URR1A DNA MER1_type 1 226 0 8 1584 1330 244 80 31 chr3 130959134 130959279 -28640504 - ORR1D2 LTR MaLR -226 144 3 8 1584 333 0 0 0 chr3 130959991 130960028 -28639755 + (CA)n Simple_repeat Simple_repeat 2 38 0 8 1584 498 17 0 0 chr3 130960028 130960086 -28639697 + (GA)n Simple_repeat Simple_repeat 2 60 0 8 1584 464 231 0 8 chr3 130960093 130960211 -28639572 + Tigger2b DNA MER2_type 110 226 -500 8 1584 263 224 78 144 chr3 130960224 130960391 -28639392 + RMER15 LTR ERVL 6 161 -414 8 1584 591 288 114 36 chr3 130960644 130960976 -28638807 + Lx8 LINE L1 7114 7471 -2 8 1584 922 114 99 33 chr3 130961007 130961179 -28638604 + B2_Mm2 SINE B2 3 188 -7 8 1584 185 0 40 0 chr3 130961179 130961204 -28638579 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 8 1584 697 254 215 8 chr3 130961226 130961579 -28638204 + Tigger2b DNA MER2_type 231 656 -70 8 1584 277 254 63 0 chr3 130961593 130961656 -28638127 + tRNA-Ala-GCA tRNA tRNA 2 68 -7 8 1584 205 161 0 0 chr3 130961665 130961696 -28638087 + (TG)n Simple_repeat Simple_repeat 1 31 0 8 1584 361 179 0 0 chr3 130961759 130961815 -28637968 + B3A SINE B2 1 56 -142 8 1584 363 316 208 19 chr3 130963194 130963410 -28636373 - B4A SINE B4 -7 285 29 8 1584 4204 128 42 53 chr3 130963410 130964169 -28635614 + RMER6A LTR ERVK 6 756 0 8 1584 2208 139 94 41 chr3 130964565 130965001 -28634782 + RMER6B LTR ERVK 1 459 -2 8 1584 1416 76 33 0 chr3 130965009 130965193 -28634590 + B2_Mm2 SINE B2 2 191 -4 8 1584 213 23 0 102 chr3 130965459 130965508 -28634275 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 8 1584 600 230 0 3 chr3 130966020 130966147 -28633636 - B3A SINE B2 -72 123 1 8 1584 1252 85 108 0 chr3 130966430 130966606 -28633177 + B2_Mm2 SINE B2 1 195 0 8 1584 3306 270 99 30 chr3 130967391 130968320 -28631463 + Lx8 LINE L1 5957 6962 -511 8 1584 189 0 0 0 chr3 130968320 130968341 -28631442 + (CA)n Simple_repeat Simple_repeat 2 22 0 8 1584 3306 270 99 30 chr3 130968341 130968722 -28631061 + Lx8 LINE L1 6963 7357 -116 8 1584 390 284 56 0 chr3 130968819 130968981 -28630802 + L1M2 LINE L1 5494 5664 -627 8 1584 620 305 7 13 chr3 130969096 130969249 -28630534 + RSINE1 SINE B4 13 164 -1 8 1584 263 130 19 0 chr3 130969255 130969309 -28630474 + (CA)n Simple_repeat Simple_repeat 2 56 0 8 1584 471 63 0 0 chr3 130969610 130969673 -28630110 + (CA)n Simple_repeat Simple_repeat 2 64 0 8 1584 279 0 0 0 chr3 130970167 130970198 -28629585 + (TG)n Simple_repeat Simple_repeat 2 32 0 8 1584 521 299 8 16 chr3 130970652 130970781 -28629002 + B1_Mur1 SINE Alu 2 129 -20 8 1584 547 119 0 38 chr3 130970782 130970887 -28628896 + GA-rich Low_complexity Low_complexity 4 104 0 8 1584 326 281 106 33 chr3 130971336 130971501 -28628282 - RSINE1 SINE B4 0 292 71 8 1584 214 191 21 0 chr3 130971556 130971603 -28628180 + (CA)n Simple_repeat Simple_repeat 2 49 0 8 1584 668 180 0 43 chr3 130972864 130972980 -28626803 + B3 SINE B2 3 113 -103 8 1584 972 131 6 11 chr3 130972985 130973162 -28626621 + (GAAA)n Simple_repeat Simple_repeat 3 178 0 8 1584 182 91 30 0 chr3 130974462 130974495 -28625288 + (GAAA)n Simple_repeat Simple_repeat 2 35 0 8 1584 507 354 71 33 chr3 130975518 130975616 -28624167 + RMER5 LTR ERV1 152 263 -271 8 1584 261 57 0 0 chr3 130975616 130975651 -28624132 + (CAA)n Simple_repeat Simple_repeat 2 36 0 8 1584 507 354 71 33 chr3 130975651 130975920 -28623863 + RMER5 LTR ERV1 264 533 -1 8 1584 301 299 147 15 chr3 130976263 130976399 -28623384 - HAL1-3A_ME LINE L1 -413 2445 2292 8 1584 1001 198 19 28 chr3 130976401 130976619 -28623164 - B3 SINE B2 0 195 2 8 1584 301 309 21 11 chr3 130976774 130976869 -28622914 - MLT1A0 LTR MaLR -80 328 233 8 1584 1099 274 35 67 chr3 130976882 130977362 -28622421 + MT2A LTR ERVL 1 465 -68 8 1584 848 88 32 8 chr3 130977443 130977569 -28622214 + URR1B DNA MER1_type 97 225 0 8 1584 401 260 94 20 chr3 130977569 130977583 -28622200 - CYRA11_Mm Unknown Y-chromosome -305 258 153 8 1584 302 264 118 21 chr3 130977613 130977706 -28622077 - MLT1A0 LTR MaLR -263 102 1 8 1584 419 138 0 0 chr3 130977768 130977833 -28621950 + PB1D10 SINE Alu 48 112 -5 8 1584 755 261 16 78 chr3 130978007 130978264 -28621519 + B4A SINE B4 1 241 -51 8 1584 2973 33 0 118 chr3 130978277 130978691 -28621092 + RLTR10B2 LTR ERVK 1 365 0 8 1584 2360 67 19 0 chr3 130979127 130979440 -28620343 + ORR1A2 LTR MaLR 1 319 -8 8 1584 440 326 85 0 chr3 130980418 130980559 -28619224 - RSINE1 SINE B4 -8 157 5 8 1584 222 365 21 10 chr3 130980597 130980694 -28619089 - MIR SINE MIR -6 256 159 8 1584 195 42 0 0 chr3 130980696 130980720 -28619063 + (T)n Simple_repeat Simple_repeat 1 24 0 8 1584 218 313 163 30 chr3 130981421 130981556 -28618227 - MIRc SINE MIR -113 155 3 8 1584 3622 93 25 9 chr3 130981735 130982606 -28617177 - RLTR13C1 LTR ERVK 0 983 1 8 1584 344 162 138 0 chr3 130983156 130983236 -28616547 - RLTR42-int LTR ERVK -2559 2963 2873 8 1584 297 0 0 0 chr3 130983542 130983575 -28616208 + (T)n Simple_repeat Simple_repeat 1 33 0 8 1584 186 71 0 0 chr3 130983576 130983604 -28616179 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 8 1584 257 136 23 0 chr3 130984302 130984346 -28615437 - ORR1D2 LTR MaLR -9 361 317 8 1584 280 293 10 20 chr3 130984355 130984456 -28615327 - ID_B1 SINE B4 -55 169 70 8 1584 1142 205 204 33 chr3 130984455 130984661 -28615122 - MTC LTR MaLR -14 407 141 8 1584 1765 129 66 117 chr3 130984661 130985055 -28614728 - ORR1D1 LTR MaLR 0 374 1 8 1584 1142 205 204 33 chr3 130985055 130985181 -28614602 - MTC LTR MaLR -281 140 18 8 1584 207 0 0 0 chr3 130985182 130985205 -28614578 + (CTAA)n Simple_repeat Simple_repeat 3 25 0 8 1584 272 282 154 0 chr3 130985205 130985283 -28614500 - ID_B1 SINE B4 -129 95 6 8 1584 453 122 0 0 chr3 130985690 130985764 -28614019 + (CA)n Simple_repeat Simple_repeat 1 74 0 8 1584 514 252 32 9 chr3 130985818 130985950 -28613833 - PB1D10 SINE Alu 0 148 6 8 1584 307 271 90 30 chr3 130985976 130986109 -28613674 - L1MC4 LINE L1 -122 7920 7780 8 1584 381 366 18 12 chr3 130986244 130986410 -28613373 - MLT1F LTR MaLR -316 232 66 8 1584 1322 52 11 0 chr3 130986550 130986724 -28613059 + (TTTC)n Simple_repeat Simple_repeat 3 178 0 8 1584 1179 102 0 0 chr3 130987714 130987871 -28611912 + B2_Mm2 SINE B2 1 157 -38 8 1584 434 16 0 73 chr3 130987873 130987941 -28611842 + (TAAA)n Simple_repeat Simple_repeat 3 65 0 8 1584 264 376 8 17 chr3 130988193 130988312 -28611471 - MER5B DNA MER1_type -56 122 5 8 1584 417 54 0 0 chr3 130988530 130988586 -28611197 + (TG)n Simple_repeat Simple_repeat 2 57 0 8 1584 701 51 10 0 chr3 130989053 130989151 -28610632 + (TC)n Simple_repeat Simple_repeat 1 99 0 8 1584 580 202 15 46 chr3 130989321 130989451 -28610332 - RSINE1 SINE B4 -35 130 5 8 1584 366 23 0 0 chr3 130989524 130989567 -28610216 + (CA)n Simple_repeat Simple_repeat 1 43 0 8 1584 254 238 44 56 chr3 130989943 130990103 -28609680 + (GGATG)n Simple_repeat Simple_repeat 4 161 0 8 1584 451 298 11 22 chr3 130990047 130990229 -28609554 + GA-rich Low_complexity Low_complexity 1 180 0 8 1584 286 297 178 8 chr3 130990616 130990745 -28609038 - LTR48B LTR ERV1 -354 290 140 8 1584 945 210 39 0 chr3 130990916 130991097 -28608686 + B3 SINE B2 18 205 -11 8 1584 1165 56 7 0 chr3 130991930 130992073 -28607710 + B1_Mus2 SINE Alu 4 147 0 8 1584 291 51 0 0 chr3 130992073 130992093 -28607690 + (A)n Simple_repeat Simple_repeat 1 20 0 8 1584 1200 48 7 0 chr3 130992093 130992239 -28607544 + B1_Mus2 SINE Alu 1 147 0 8 1584 291 51 0 0 chr3 130992239 130992257 -28607526 + (A)n Simple_repeat Simple_repeat 1 18 0 8 1584 182 267 22 0 chr3 130993095 130993140 -28606643 + L2 LINE L2 64 109 -3310 8 1584 302 349 28 73 chr3 130993461 130993640 -28606143 + L1MEe LINE L1 927 1097 -3757 8 1584 531 0 0 0 chr3 130994553 130994612 -28605171 + (GA)n Simple_repeat Simple_repeat 1 59 0 8 1584 365 211 28 0 chr3 130994666 130994737 -28605046 + RSINE1 SINE B4 30 102 -63 8 1584 345 47 0 0 chr3 130994798 130994841 -28604942 + (CA)n Simple_repeat Simple_repeat 1 43 0 8 1584 3962 198 43 103 chr3 130994880 130995986 -28603797 + RMER12 LTR ERVK 1 1040 -282 8 1584 220 207 69 0 chr3 130996116 130996174 -28603609 - B4 SINE B4 -200 92 31 8 1584 22 0 0 0 chr3 130996210 130996232 -28603551 + AT_rich Low_complexity Low_complexity 1 22 0 8 1584 288 0 0 0 chr3 130996358 130996390 -28603393 + (CA)n Simple_repeat Simple_repeat 2 33 0 8 1584 1453 138 142 0 chr3 130996935 130997210 -28602573 - MTC LTR MaLR 0 421 108 8 1584 876 28 0 0 chr3 130997211 130997317 -28602466 + B1_Mus1 SINE Alu 2 107 -41 8 1584 642 224 62 62 chr3 130997271 130997466 -28602317 + URR1A DNA MER1_type 32 226 0 8 1584 731 150 0 0 chr3 130997466 130997577 -28602206 - MTC LTR MaLR -310 111 1 8 1584 238 279 23 23 chr3 130999082 130999170 -28600613 + MLT1F1 LTR MaLR 478 565 -4 8 1584 279 0 0 0 chr3 130999318 130999349 -28600434 + (CA)n Simple_repeat Simple_repeat 2 32 0 9 1584 718 255 121 24 chr3 131000002 131000251 -28599532 + MLT1D LTR MaLR 202 474 -31 1 1584 576 299 64 25 chr3 131002164 131002366 -28597417 - ORR1E LTR MaLR -145 214 5 2 1584 1205 54 0 13 chr3 131002428 131002578 -28597205 + B1_Mus1 SINE Alu 1 148 0 3 1584 218 213 0 0 chr3 131002583 131002630 -28597153 + A-rich Low_complexity Low_complexity 1 47 0 4 1584 298 172 14 111 chr3 131002684 131002756 -28597027 + tRNA-Ala-GCY_ tRNA tRNA 2 66 -9 5 1584 308 358 61 28 chr3 131002845 131003092 -28596691 - L1M5 LINE L1 -599 5641 5387 6 1584 764 222 32 43 chr3 131003298 131003486 -28596297 - B3A SINE B2 -11 187 2 7 1584 365 271 105 12 chr3 131003505 131003610 -28596173 - PB1D7 SINE Alu -5 115 1 8 1584 1040 236 0 23 chr3 131003737 131003756 -28596027 - B3 SINE B2 0 216 198 9 1584 1250 113 0 26 chr3 131003756 131003947 -28595836 - B2_Mm2 SINE B2 -9 186 1 1 1584 1040 236 0 23 chr3 131003947 131004148 -28595635 - B3 SINE B2 -19 197 1 9 1584 291 275 112 22 chr3 131004276 131004410 -28595373 - B4A SINE B4 -13 279 134 1 1584 548 223 18 0 chr3 131005105 131005217 -28594566 - ORR1E-int LTR MaLR -1011 359 246 2 1584 315 0 0 0 chr3 131006292 131006327 -28593456 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1 1584 205 120 0 57 chr3 131006623 131006676 -28593107 + T-rich Low_complexity Low_complexity 4 53 0 1 1584 446 284 18 0 chr3 131006680 131006789 -28592994 - B1_Mur1 SINE Alu -36 113 3 1 1584 332 357 145 13 chr3 131006789 131006838 -28592945 - B4 SINE B4 -89 202 24 1 1584 470 245 9 0 chr3 131007527 131007633 -28592150 - ORR1E-int LTR MaLR -1018 352 246 2 1584 714 232 213 79 chr3 131008083 131008411 -28591372 + MLT1B LTR MaLR 16 387 -3 1 1584 3421 154 30 0 chr3 131008545 131009103 -28590680 - RMER15 LTR ERVL 0 575 1 1 1584 604 269 0 0 chr3 131009658 131009807 -28589976 - B1_Mur1 SINE Alu 0 149 1 1 1584 318 26 0 0 chr3 131010089 131010128 -28589655 + (TTTTG)n Simple_repeat Simple_repeat 1 39 0 1 1584 1114 67 0 0 chr3 131010128 131010263 -28589520 - B1_Mus1 SINE Alu -13 135 1 2 1584 336 318 135 52 chr3 131010263 131010611 -28589172 + RLTR12B LTR ERVK 97 473 -55 2 1584 474 249 35 41 chr3 131010977 131011149 -28588634 + L1ME2 LINE L1 5806 5976 -188 2 1584 685 36 36 0 chr3 131011198 131011281 -28588502 - Lx LINE L1 -654 6000 5915 2 1584 737 261 13 13 chr3 131011332 131011557 -28588226 - RLTR6-int LTR ERV1 -828 6950 6726 2 1584 234 0 0 0 chr3 131012090 131012116 -28587667 + (G)n Simple_repeat Simple_repeat 1 26 0 2 1584 1144 204 34 22 chr3 131012142 131012418 -28587365 - RLTR6-int LTR ERV1 -7517 261 3 2 1584 553 263 82 57 chr3 131012427 131012701 -28587082 - LTRIS4 LTR ERV1 -7 512 235 2 1584 3118 117 0 7 chr3 131012803 131013258 -28586525 - L1_Mm LINE L1 -300 5583 5132 2 1584 559 317 83 104 chr3 131013533 131014040 -28585743 + RLTR18B LTR ERVK 2 497 -15 2 1584 474 354 53 58 chr3 131014120 131014345 -28585438 - MER58A DNA MER1_type 0 224 1 2 1584 261 0 0 0 chr3 131014348 131014377 -28585406 + (CA)n Simple_repeat Simple_repeat 2 30 0 3 1584 423 259 146 19 chr3 131014530 131014919 -28584864 - L1M4 LINE L1 -747 5421 4976 3 1584 246 265 59 0 chr3 131014927 131014938 -28584845 + CYRA11_Mm Unknown Y-chromosome 160 174 -443 3 1584 490 77 0 0 chr3 131014938 131015003 -28584780 - URR1B DNA MER1_type 0 225 161 3 1584 422 267 79 13 chr3 131015193 131015345 -28584438 - RSINE1 SINE B4 -2 163 2 3 1584 909 134 69 53 chr3 131015652 131015841 -28583942 - B2_Mm2 SINE B2 -2 193 2 3 1584 636 274 78 132 chr3 131016541 131016987 -28582796 + RLTR23 LTR ERV1 5 426 -4 3 1584 2215 85 42 0 chr3 131017017 131017323 -28582460 - ORR1A2 LTR MaLR -8 319 1 3 1584 434 284 37 69 chr3 131017566 131017755 -28582028 - LTR40b LTR ERVL -84 378 196 3 1584 1592 204 68 6 chr3 131017931 131018271 -28581512 - ORR1D2 LTR MaLR 0 370 10 3 1584 571 169 0 0 chr3 131019821 131019910 -28579873 - B3 SINE B2 -125 91 3 4 1584 933 176 65 16 chr3 131020207 131020392 -28579391 + RMER4B LTR ERVK 62 255 -330 4 1584 1118 89 4 7 chr3 131020392 131020664 -28579119 + (TCC)n Simple_repeat Simple_repeat 1 271 0 4 1584 700 143 0 11 chr3 131020666 131020716 -28579067 + polypyrimidine Low_complexity Low_complexity 127 175 0 4 1584 1031 94 0 6 chr3 131020716 131020897 -28578886 + (TCC)n Simple_repeat Simple_repeat 1 180 0 4 1584 700 143 0 11 chr3 131020897 131020923 -28578860 + polypyrimidine Low_complexity Low_complexity 101 126 0 4 1584 990 112 0 0 chr3 131020923 131021101 -28578682 + (TCC)n Simple_repeat Simple_repeat 1 178 0 4 1584 700 143 0 11 chr3 131021101 131021200 -28578583 + polypyrimidine Low_complexity Low_complexity 2 100 0 4 1584 323 215 8 0 chr3 131021200 131021321 -28578462 + CT-rich Low_complexity Low_complexity 1 122 0 4 1584 475 183 309 22 chr3 131021342 131021517 -28578266 + RMER4B LTR ERVK 343 568 -17 4 1584 610 238 13 44 chr3 131021665 131021823 -28577960 + RSINE1 SINE B4 11 163 -2 4 1584 946 117 0 76 chr3 131022588 131022734 -28577049 + B1_Mus1 SINE Alu 2 135 -13 5 1584 279 0 0 0 chr3 131022734 131022765 -28577018 + (CAAA)n Simple_repeat Simple_repeat 1 31 0 5 1584 412 248 46 28 chr3 131023675 131023783 -28576000 + PB1D7 SINE Alu 6 115 -5 5 1584 21 0 0 0 chr3 131025386 131025407 -28574376 + AT_rich Low_complexity Low_complexity 1 21 0 5 1584 530 91 0 13 chr3 131025407 131025485 -28574298 + B1_Mus2 SINE Alu 71 147 0 5 1584 1332 74 0 0 chr3 131026699 131027031 -28572752 + (CCA)n Simple_repeat Simple_repeat 1 332 0 5 1584 945 98 0 0 chr3 131027186 131027329 -28572454 + (TG)n Simple_repeat Simple_repeat 1 143 0 5 1584 285 29 0 0 chr3 131027329 131027362 -28572421 + (GA)n Simple_repeat Simple_repeat 1 34 0 5 1584 396 0 0 0 chr3 131027743 131027787 -28571996 + (CA)n Simple_repeat Simple_repeat 2 45 0 5 1584 261 139 0 0 chr3 131028060 131028103 -28571680 + (CGGA)n Simple_repeat Simple_repeat 3 45 0 5 1584 333 234 16 0 chr3 131028107 131028171 -28571612 - ID4 SINE ID -9 74 10 6 1584 2945 120 7 15 chr3 131029064 131029521 -28570262 - RLTR11B LTR ERVK 0 453 1 6 1584 198 0 0 0 chr3 131030055 131030077 -28569706 + (T)n Simple_repeat Simple_repeat 1 22 0 6 1584 492 228 0 0 chr3 131030084 131030176 -28569607 - PB1D10 SINE Alu -1 116 25 6 1584 423 0 0 0 chr3 131031020 131031067 -28568716 + (TC)n Simple_repeat Simple_repeat 2 48 0 6 1584 402 274 36 54 chr3 131031097 131031207 -28568576 - B4A SINE B4 -2 290 183 6 1584 2052 141 21 9 chr3 131031207 131031536 -28568247 + ORR1B1 LTR MaLR 1 333 -61 6 1584 1738 169 59 22 chr3 131032042 131032399 -28567384 + ORR1D1 LTR MaLR 5 374 0 6 1584 646 190 17 0 chr3 131032678 131032794 -28566989 - B1_Mur1 SINE Alu -25 124 7 6 1584 423 159 86 86 chr3 131032717 131032834 -28566949 - MT2B2 LTR ERVL -344 240 124 6 1584 287 167 0 100 chr3 131034397 131034457 -28565326 + B1_Mus2 SINE Alu 16 69 -78 7 1584 304 280 69 10 chr3 131034977 131035078 -28564705 + Tigger7 DNA MER2_type 8 114 -2377 7 1584 484 246 39 189 chr3 131035092 131035352 -28564431 + Tigger7 DNA MER2_type 2271 2491 0 7 1584 249 33 0 0 chr3 131035455 131035485 -28564298 + (TG)n Simple_repeat Simple_repeat 1 30 0 7 1584 423 52 0 0 chr3 131035485 131035543 -28564240 + (GA)n Simple_repeat Simple_repeat 2 59 0 7 1584 352 306 60 75 chr3 131035549 131035683 -28564100 - RSINE1 SINE B4 -31 134 3 7 1584 3071 184 80 116 chr3 131036135 131036990 -28562793 + Lx7 LINE L1 6873 7696 0 7 1584 318 26 0 0 chr3 131037256 131037295 -28562488 + (TG)n Simple_repeat Simple_repeat 2 40 0 7 1584 318 236 91 36 chr3 131039258 131039368 -28560415 - PB1D7 SINE Alu -2 118 3 7 1584 705 318 64 36 chr3 131040045 131040512 -28559271 + L1MA6 LINE L1 5699 6178 -122 7 1584 932 190 97 5 chr3 131040513 131040709 -28559074 + B3 SINE B2 3 216 0 7 1584 2816 73 141 139 chr3 131040751 131041262 -28558521 + RLTR1B LTR ERV1 1 512 0 8 1584 463 283 210 11 chr3 131041380 131041566 -28558217 + ID_B1 SINE B4 2 224 0 8 1584 239 167 125 0 chr3 131042584 131042632 -28557151 + ID SINE ID 23 76 -148 8 1584 253 287 62 36 chr3 131042862 131042974 -28556809 - L1MA5 LINE L1 0 6300 6186 8 1584 405 222 12 12 chr3 131042993 131043075 -28556708 - ID4_ SINE ID 0 83 2 8 1584 643 188 16 0 chr3 131044256 131044384 -28555399 - B1_Mur2 SINE Alu -1 148 19 8 1584 574 269 14 14 chr3 131045778 131045925 -28553858 + B1F SINE Alu 2 148 -1 8 1584 939 206 61 75 chr3 131046828 131047106 -28552677 + B4A SINE B4 1 274 -18 8 1584 480 18 0 0 chr3 131047135 131047192 -28552591 + (TG)n Simple_repeat Simple_repeat 1 57 0 8 1584 935 248 9 19 chr3 131048509 131048723 -28551060 - B3 SINE B2 -4 212 1 8 1584 651 276 76 0 chr3 131048758 131048943 -28550840 + B3 SINE B2 6 204 -12 9 1584 1898 147 13 88 chr3 131049241 131049514 -28550269 - MTC LTR MaLR -62 359 109 9 1584 1052 99 134 6 chr3 131049514 131049686 -28550097 + B2_Mm2 SINE B2 2 195 0 9 1584 1898 147 13 88 chr3 131049686 131049800 -28549983 - MTC LTR MaLR -313 108 1 9 1584 451 258 28 15 chr3 131050851 131051016 -28548767 - B3A SINE B2 -29 187 8 9 1584 234 287 131 62 chr3 131051805 131051950 -28547833 - MIRb SINE MIR -26 242 88 9 1584 298 288 0 0 chr3 131052320 131052400 -28547383 + ID4_ SINE ID 1 80 -3 9 1584 458 33 17 0 chr3 131052402 131052462 -28547321 + (CA)n Simple_repeat Simple_repeat 2 62 0 9 1584 710 290 5 5 chr3 131052793 131052977 -28546806 + ID_B1 SINE B4 32 215 -9 9 1584 620 218 49 0 chr3 131053131 131053273 -28546510 - B1F1 SINE Alu 0 149 1 9 1584 334 293 45 6 chr3 131053603 131053783 -28546000 + L1MB7 LINE L1 5994 6177 -1 9 1584 1219 42 0 0 chr3 131053792 131053934 -28545849 + B1_Mus2 SINE Alu 2 143 -4 1 1584 459 125 0 0 chr3 131054326 131054398 -28545385 + (CAT)n Simple_repeat Simple_repeat 2 73 0 1 1584 738 213 0 0 chr3 131054913 131055222 -28544561 + (TG)n Simple_repeat Simple_repeat 1 309 0 1 1584 32 43 0 0 chr3 131056042 131056088 -28543695 + AT_rich Low_complexity Low_complexity 1 46 0 1 1584 338 305 202 17 chr3 131056269 131056506 -28543277 + RMER15 LTR ERVL 295 575 0 1 1584 2303 149 52 12 chr3 131057195 131057597 -28542186 + MTC LTR MaLR 1 418 -3 1 1584 290 256 49 0 chr3 131057771 131057853 -28541930 - Lx9 LINE L1 -195 7449 7364 1 1584 909 241 160 30 chr3 131059103 131059496 -28540287 - RMER6B LTR ERVK -15 446 3 1 1584 231 197 0 40 chr3 131059687 131059761 -28540022 + (CAGAGA)n Simple_repeat Simple_repeat 3 73 0 1 1584 815 62 18 0 chr3 131060041 131060154 -28539629 + (TTTC)n Simple_repeat Simple_repeat 2 116 0 1 1584 1456 29 40 0 chr3 131060154 131060327 -28539456 - B2_Mm2 SINE B2 -15 180 1 1 1584 504 151 57 0 chr3 131060801 131060907 -28538876 + PB1D7 SINE Alu 2 113 -7 1 1584 215 152 22 0 chr3 131061253 131061299 -28538484 + (CAAAC)n Simple_repeat Simple_repeat 2 48 0 1 1584 297 0 0 0 chr3 131061689 131061722 -28538061 + (TG)n Simple_repeat Simple_repeat 2 34 0 1 1584 503 292 44 40 chr3 131061792 131062020 -28537763 - B4A SINE B4 -63 229 1 1 1584 449 290 8 24 chr3 131062063 131062190 -28537593 - PB1 SINE Alu -2 125 1 1 1584 289 236 77 22 chr3 131062259 131062350 -28537433 - ID_B1 SINE B4 -3 221 126 1 1584 648 242 6 58 chr3 131062536 131062707 -28537076 - RSINE1 SINE B4 0 165 4 1 1584 26 30 0 0 chr3 131064211 131064244 -28535539 + AT_rich Low_complexity Low_complexity 1 33 0 1 1584 459 0 0 0 chr3 131064373 131064424 -28535359 + (GA)n Simple_repeat Simple_repeat 2 52 0 1 1584 1242 100 0 0 chr3 131064452 131064632 -28535151 + (GGAGAA)n Simple_repeat Simple_repeat 1 180 0 1 1584 594 0 0 0 chr3 131064643 131064709 -28535074 + (GGAAA)n Simple_repeat Simple_repeat 4 69 0 1 1584 581 213 210 18 chr3 131065209 131065355 -28534428 + B3 SINE B2 4 181 -35 1 1584 333 0 0 0 chr3 131065355 131065392 -28534391 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 1584 581 213 210 18 chr3 131065392 131065412 -28534371 + B3 SINE B2 182 201 -15 1 1584 267 239 0 40 chr3 131065644 131065718 -28534065 - BC1_Mm scRNA scRNA -74 78 8 1 1584 242 259 46 9 chr3 131065937 131066046 -28533737 + (TA)n Simple_repeat Simple_repeat 1 113 0 1 1584 362 234 31 21 chr3 131066119 131066215 -28533568 + PB1D10 SINE Alu 21 117 0 1 1584 201 170 0 86 chr3 131068769 131068827 -28530956 + T-rich Low_complexity Low_complexity 4 56 0 1 1584 247 211 20 40 chr3 131069135 131069203 -28530580 - Lx9 LINE L1 -60 7584 7517 1 1584 207 0 0 0 chr3 131069203 131069226 -28530557 + (CA)n Simple_repeat Simple_repeat 2 24 0 1 1584 247 211 20 40 chr3 131069226 131069256 -28530527 - Lx9 LINE L1 -128 7516 7489 1 1584 318 359 116 14 chr3 131069982 131070197 -28529586 - L2b LINE L2 -173 3202 2966 1 1584 186 347 27 0 chr3 131070552 131070627 -28529156 + MIR SINE MIR 154 230 -32 1 1584 718 261 180 40 chr3 131070649 131070976 -28528807 + MTEa LTR MaLR 5 377 -2 1 1584 257 275 29 14 chr3 131071101 131071171 -28528612 + ID4_ SINE ID 2 72 -11 1 1584 842 208 37 27 chr3 131071234 131071422 -28528361 - B3 SINE B2 0 216 27 1 1584 21 0 0 0 chr3 131071422 131071443 -28528340 + AT_rich Low_complexity Low_complexity 1 21 0 1 1584 1280 92 54 0 chr3 131071446 131071631 -28528152 - B2_Mm2 SINE B2 0 195 1 1 1584 214 184 0 0 chr3 131071631 131071669 -28528114 - B3 SINE B2 -177 39 2 1 1584 1257 188 9 0 chr3 131071684 131071908 -28527875 - URR1A DNA MER1_type 0 226 1 1 1585 368 312 7 7 chr3 131072554 131072699 -28527084 - MER68 LTR ERVL -2 561 417 1 1585 497 273 75 23 chr3 131072780 131072975 -28526808 - MER68 LTR ERVL -286 277 73 1 1585 1194 206 145 84 chr3 131072975 131073320 -28526463 + ORR1D2 LTR MaLR 1 366 -4 1 1585 1377 73 23 0 chr3 131073320 131073497 -28526286 + B2_Mm2 SINE B2 1 181 -14 1 1585 497 273 75 23 chr3 131073497 131073514 -28526269 - MER68 LTR ERVL -491 72 54 1 1585 400 47 380 0 chr3 131073565 131073667 -28526116 + B2_Mm2 SINE B2 47 192 -3 1 1585 340 192 14 14 chr3 131073679 131073753 -28526030 - MER68 LTR ERVL -478 85 12 1 1585 554 222 0 0 chr3 131073903 131074011 -28525772 + B1_Mur1 SINE Alu 30 137 -12 1 1585 948 236 20 0 chr3 131074244 131074443 -28525340 + B3 SINE B2 7 209 -7 1 1585 569 257 57 72 chr3 131074506 131074699 -28525084 + B3A SINE B2 1 190 -8 1 1585 308 191 313 20 chr3 131076286 131076436 -28523347 + MTD LTR MaLR 7 200 -219 1 1585 780 193 115 40 chr3 131127297 131127497 -28472286 - B3 SINE B2 -1 215 1 1 1585 365 305 96 30 chr3 131128049 131128184 -28471599 + ID_B1 SINE B4 79 222 -2 1 1585 656 208 63 48 chr3 131129841 131130048 -28469735 + B3 SINE B2 1 210 -6 1 1585 630 99 0 0 chr3 131130526 131130617 -28469166 + (TCTA)n Simple_repeat Simple_repeat 2 92 0 1 1585 444 272 56 12 chr3 131131975 131132135 -28467648 + L1MC LINE L1 5053 5219 -927 1 1585 896 233 58 5 chr3 131132201 131132391 -28467392 + B3 SINE B2 17 216 0 1 1585 267 233 33 0 chr3 131132501 131132561 -28467222 - ID4_ SINE ID -13 70 9 1 1585 389 191 0 0 chr3 131132583 131132651 -28467132 + RSINE1 SINE B4 1 68 -97 1 1585 1311 64 40 6 chr3 131133318 131133492 -28466291 - B2_Mm2 SINE B2 -14 181 2 1 1585 612 181 29 43 chr3 131134595 131134734 -28465049 + B1_Mur2 SINE Alu 1 137 -12 1 1585 748 214 40 76 chr3 131134972 131135195 -28464588 + B3 SINE B2 1 215 -1 1 1585 550 192 0 28 chr3 131135508 131135615 -28464168 - PB1D10 SINE Alu -11 106 3 1 1585 268 303 24 139 chr3 131135615 131135699 -28464084 - MT2B2 LTR ERVL -425 159 95 1 1585 253 200 0 0 chr3 131136836 131136891 -28462892 + G-rich Low_complexity Low_complexity 1 55 0 1 1585 468 263 26 26 chr3 131136974 131137091 -28462692 + PB1D10 SINE Alu 1 117 0 1 1585 252 309 48 0 chr3 131137601 131137685 -28462098 + L2 LINE L2 2013 2100 -1319 1 1585 9070 11 0 3 chr3 131137914 131139021 -28460762 - L1Md_T LINE L1 0 6582 5479 1 1585 257 174 14 0 chr3 131139356 131139425 -28460358 + (TAA)n Simple_repeat Simple_repeat 2 71 0 1 1585 223 308 90 41 chr3 131139809 131139846 -28459937 + ID_B1 SINE B4 59 186 -38 1 1585 264 235 153 0 chr3 131139846 131139931 -28459852 + B1F2 SINE Alu 11 108 -41 1 1585 220 200 39 20 chr3 131139944 131139995 -28459788 + ID SINE ID 3 54 -170 1 1585 361 268 40 40 chr3 131140382 131140483 -28459300 + PB1D10 SINE Alu 12 112 -5 1 1585 317 270 105 33 chr3 131141024 131141177 -28458606 + Charlie5 DNA MER1_type 2431 2594 -30 1 1585 773 232 0 0 chr3 131141351 131141489 -28458294 + B1_Mur1 SINE Alu 1 138 -11 1 1585 186 43 0 0 chr3 131141489 131141512 -28458271 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 1585 275 307 11 11 chr3 131141917 131142006 -28457777 + MTEb LTR MaLR 284 372 -7 1 1585 860 294 15 38 chr3 131142184 131142449 -28457334 + B4A SINE B4 14 272 -20 1 1585 369 0 0 0 chr3 131142450 131142491 -28457292 + (CAGA)n Simple_repeat Simple_repeat 2 42 0 1 1585 693 179 220 0 chr3 131142881 131143054 -28456729 + B3 SINE B2 1 211 -5 1 1585 490 307 109 41 chr3 131143103 131143324 -28456459 - MLT1D LTR MaLR 0 505 270 1 1585 346 250 74 82 chr3 131143440 131143562 -28456221 + RSINE1 SINE B4 41 161 -4 1 1585 1110 168 66 0 chr3 131143713 131143909 -28455874 + B3 SINE B2 2 210 -6 1 1585 228 253 63 51 chr3 131144275 131144354 -28455429 + ID2 SINE ID 1 80 -3 1 1585 2715 58 0 3 chr3 131144408 131144736 -28455047 + ORR1A2 LTR MaLR 1 327 0 1 1585 213 289 39 0 chr3 131144763 131144815 -28454968 + BC1_Mm scRNA scRNA 2 55 -97 1 1585 205 368 21 0 chr3 131145705 131145800 -28453983 - MIR SINE MIR -40 222 126 1 1585 247 234 71 126 chr3 131145827 131145862 -28453921 + MT2B LTR ERVL 138 165 -436 1 1585 754 116 82 37 chr3 131145862 131145996 -28453787 + B1_Mur4 SINE Alu 4 143 -7 1 1585 284 236 112 140 chr3 131145868 131146011 -28453772 + B4 SINE B4 94 232 -60 1 1585 201 147 0 0 chr3 131146014 131146048 -28453735 + (GAAAA)n Simple_repeat Simple_repeat 5 38 0 1 1585 1244 28 7 0 chr3 131147062 131147207 -28452576 + B1_Mm SINE Alu 2 147 0 1 1585 186 118 0 0 chr3 131147210 131147244 -28452539 + (A)n Simple_repeat Simple_repeat 1 34 0 1 1585 494 145 0 36 chr3 131147263 131147356 -28452427 + B1_Mur3 SINE Alu 60 149 0 1 1585 794 165 23 0 chr3 131147408 131147541 -28452242 + B1_Mur4 SINE Alu 2 137 -13 1 1585 213 0 26 51 chr3 131147542 131147581 -28452202 + (TTTTG)n Simple_repeat Simple_repeat 2 39 0 1 1585 1104 67 0 0 chr3 131147582 131147716 -28452067 - B1_Mus1 SINE Alu -13 135 2 1 1585 1092 139 32 0 chr3 131147748 131147935 -28451848 + B2_Mm2 SINE B2 2 194 -1 1 1585 838 239 67 0 chr3 131147980 131148160 -28451623 + B3A SINE B2 1 192 -6 1 1585 341 234 312 18 chr3 131148483 131148592 -28451191 - B1_Mur1 SINE Alu -6 143 3 1 1585 898 152 20 14 chr3 131148840 131148987 -28450796 + B1_Mur3 SINE Alu 2 149 0 1 1585 21 0 0 0 chr3 131149050 131149071 -28450712 + AT_rich Low_complexity Low_complexity 1 21 0 1 1585 606 169 152 99 chr3 131149632 131149823 -28449960 + B3 SINE B2 15 215 -1 1 1585 867 211 20 15 chr3 131150080 131150282 -28449501 + B3 SINE B2 4 206 -10 1 1585 271 337 119 0 chr3 131150804 131150905 -28448878 + L2c LINE L2 3275 3387 0 1 1585 440 211 67 0 chr3 131151025 131151115 -28448668 + PB1D10 SINE Alu 1 96 -21 2 1585 380 260 77 0 chr3 131151115 131151128 -28448655 + ID_B1 SINE B4 82 192 -32 2 1585 1145 52 0 0 chr3 131151273 131151409 -28448374 + B1_Mus2 SINE Alu 2 137 -10 2 1585 221 0 0 33 chr3 131151409 131151439 -28448344 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 2 1585 735 12 0 0 chr3 131151828 131151912 -28447871 + (GGAGA)n Simple_repeat Simple_repeat 5 88 0 2 1585 30 89 0 0 chr3 131153183 131153262 -28446521 + GC_rich Low_complexity Low_complexity 1 79 0 2 1585 451 268 45 90 chr3 131155167 131155323 -28444460 + B1F2 SINE Alu 1 149 0 2 1585 752 243 65 38 chr3 131155416 131155600 -28444183 + B3 SINE B2 28 216 0 2 1585 504 0 0 0 chr3 131155659 131155715 -28444068 + (TTTC)n Simple_repeat Simple_repeat 4 59 0 2 1585 999 151 34 17 chr3 131155772 131155947 -28443836 + B3 SINE B2 2 179 -37 2 1585 241 302 62 10 chr3 131156100 131156197 -28443586 + PB1D10 SINE Alu 3 104 -13 2 1585 478 191 8 17 chr3 131156511 131156628 -28443155 + CT-rich Low_complexity Low_complexity 3 118 0 2 1585 519 254 111 0 chr3 131156899 131157025 -28442758 + RSINE1 SINE B4 3 142 -23 2 1585 198 0 0 0 chr3 131157065 131157087 -28442696 + (GGA)n Simple_repeat Simple_repeat 1 22 0 2 1585 1944 290 88 12 chr3 131157304 131157950 -28441833 + Lx8 LINE L1 6203 6897 -576 2 1585 252 0 0 0 chr3 131158081 131158109 -28441674 + (CCA)n Simple_repeat Simple_repeat 2 29 0 2 1585 5063 193 26 73 chr3 131158192 131159307 -28440476 + RMER1B Other Other 2 1064 -2 2 1585 252 86 0 0 chr3 131159353 131159388 -28440395 + (CAAAG)n Simple_repeat Simple_repeat 5 39 0 2 1585 189 0 0 0 chr3 131160176 131160197 -28439586 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 2 1585 725 210 7 28 chr3 131160228 131160370 -28439413 + RSINE1 SINE B4 2 140 -25 2 1585 435 19 0 0 chr3 131160379 131160431 -28439352 + (CA)n Simple_repeat Simple_repeat 1 52 0 2 1585 447 19 0 0 chr3 131160431 131160482 -28439301 + (GA)n Simple_repeat Simple_repeat 2 53 0 2 1585 241 289 100 117 chr3 131160482 131160509 -28439274 + B2_Mm2 SINE B2 157 176 -19 2 1585 738 136 0 96 chr3 131160520 131160630 -28439153 + B2_Mm2 SINE B2 55 161 -34 2 1585 360 0 0 0 chr3 131160630 131160670 -28439113 + (TAAA)n Simple_repeat Simple_repeat 2 41 0 2 1585 738 136 0 96 chr3 131160670 131160705 -28439078 + B2_Mm2 SINE B2 162 186 -9 2 1585 273 211 73 0 chr3 131161900 131161966 -28437817 + L1MB8 LINE L1 6001 6072 -102 2 1585 307 196 0 51 chr3 131161971 131162030 -28437753 + ID SINE ID 16 71 -153 2 1585 1767 100 143 0 chr3 131162028 131162307 -28437476 - ORR1A4 LTR MaLR -10 319 1 2 1585 465 227 64 48 chr3 131162307 131162428 -28437355 + ID_B1 SINE B4 101 223 -1 2 1585 225 234 153 41 chr3 131162629 131162727 -28437056 - Tigger5 DNA MER2_type -4 2402 2294 2 1585 600 344 31 4 chr3 131162734 131162962 -28436821 - Tigger5 DNA MER2_type -2172 234 1 2 1585 466 256 51 58 chr3 131163282 131163419 -28436364 - MTE2b LTR MaLR -1 378 243 2 1585 2176 147 73 25 chr3 131163541 131163940 -28435843 + MTC LTR MaLR 4 421 0 2 1585 974 245 42 31 chr3 131164272 131164559 -28435224 - B4 SINE B4 -1 291 2 2 1585 22 35 0 0 chr3 131165520 131165549 -28434234 + AT_rich Low_complexity Low_complexity 1 29 0 2 1585 3147 56 5 10 chr3 131165560 131165958 -28433825 + MTA_Mm LTR MaLR 1 396 0 2 1585 269 187 45 68 chr3 131166019 131166151 -28433632 + (TATATG)n Simple_repeat Simple_repeat 2 130 0 2 1585 230 268 0 67 chr3 131166154 131166214 -28433569 - RSINE1 SINE B4 0 165 110 2 1585 253 275 63 55 chr3 131166289 131166416 -28433367 - B4 SINE B4 -141 151 24 2 1585 510 303 44 19 chr3 131166458 131166616 -28433167 + MER5B DNA MER1_type 15 176 -2 2 1585 287 262 149 0 chr3 131167111 131167218 -28432565 + PB1 SINE Alu 3 125 -2 2 1585 345 305 94 0 chr3 131168049 131168177 -28431606 + ID_B1 SINE B4 84 223 -1 2 1585 592 290 125 96 chr3 131169058 131169466 -28430317 - MLT1C LTR MaLR -47 420 1 2 1585 602 225 221 19 chr3 131170082 131170295 -28429488 + B4 SINE B4 15 270 -22 2 1585 318 98 0 0 chr3 131170295 131170346 -28429437 + (CA)n Simple_repeat Simple_repeat 1 51 0 2 1585 700 177 86 25 chr3 131170374 131170536 -28429247 + B3 SINE B2 28 199 -17 2 1585 217 178 65 32 chr3 131170538 131170631 -28429152 + (TATAA)n Simple_repeat Simple_repeat 5 100 0 2 1585 23 0 0 0 chr3 131171512 131171535 -28428248 + AT_rich Low_complexity Low_complexity 1 23 0 2 1585 1193 96 0 6 chr3 131171625 131171804 -28427979 + (TTCCC)n Simple_repeat Simple_repeat 3 180 0 2 1585 882 129 0 0 chr3 131171804 131171944 -28427839 + (TTTC)n Simple_repeat Simple_repeat 1 140 0 2 1585 288 0 0 0 chr3 131172080 131172112 -28427671 + (TG)n Simple_repeat Simple_repeat 1 32 0 2 1585 418 281 0 10 chr3 131172121 131172218 -28427565 - RSINE1 SINE B4 -41 124 29 2 1585 2402 172 30 0 chr3 131172448 131172854 -28426929 + MTC LTR MaLR 1 418 -3 2 1585 244 269 0 29 chr3 131173312 131173381 -28426402 + GA-rich Low_complexity Low_complexity 2 68 0 2 1585 495 246 76 45 chr3 131173396 131173528 -28426255 + B1_Mur1 SINE Alu 9 144 -5 2 1585 469 203 6 6 chr3 131173528 131173706 -28426077 + GA-rich Low_complexity Low_complexity 1 178 0 2 1585 193 348 0 29 chr3 131174014 131174082 -28425701 + MIRm SINE MIR 207 272 -4 2 1585 435 232 18 18 chr3 131175434 131175548 -28424235 - B1_Mus2 SINE Alu -5 142 29 2 1585 1412 116 4 18 chr3 131175536 131175765 -28424018 + RLTR17 LTR ERVK 467 692 0 2 1585 1803 148 81 3 chr3 131176104 131176437 -28423346 + RLTR15 LTR ERVK 1 359 0 2 1585 189 0 0 0 chr3 131176935 131176956 -28422827 + (TTA)n Simple_repeat Simple_repeat 1 21 0 2 1585 1871 45 0 0 chr3 131176956 131177179 -28422604 - L1Md_F2 LINE L1 -23 6559 6337 2 1585 6117 38 15 0 chr3 131177177 131177893 -28421890 + L1Md_F2 LINE L1 5630 6356 -226 2 1585 1470 39 0 27 chr3 131178036 131178221 -28421562 - B2_Mm2 SINE B2 -14 181 2 2 1585 4299 111 98 35 chr3 131178222 131178913 -28420870 - RMER19A LTR ERVK -2 735 1 2 1585 1321 157 37 0 chr3 131179044 131179261 -28420522 - URR1A DNA MER1_type -1 225 1 2 1585 740 239 23 23 chr3 131179902 131180073 -28419710 + B4A SINE B4 2 172 -120 2 1585 508 289 69 44 chr3 131180109 131180312 -28419471 + B3 SINE B2 3 210 -6 2 1585 258 105 0 0 chr3 131180320 131180358 -28419425 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 2 1585 283 216 15 146 chr3 131181091 131181221 -28418562 + MT2B LTR ERVL 152 264 -337 2 1585 741 197 7 0 chr3 131181109 131181246 -28418537 + B1_Mus1 SINE Alu 1 138 -10 2 1585 775 201 0 0 chr3 131182112 131182251 -28417532 - B1F2 SINE Alu -5 144 6 2 1585 371 280 67 8 chr3 131182148 131182267 -28417516 - B4 SINE B4 -95 197 72 2 1585 252 354 10 0 chr3 131183185 131183284 -28416499 - MIRm SINE MIR -4 272 173 2 1585 929 97 0 29 chr3 131184048 131184186 -28415597 + B1_Mus1 SINE Alu 2 135 -13 2 1585 450 0 0 0 chr3 131184186 131184236 -28415547 + (CAAA)n Simple_repeat Simple_repeat 1 50 0 2 1585 478 254 0 33 chr3 131184354 131184476 -28415307 - ID_B1 SINE B4 -11 213 96 2 1585 324 0 0 0 chr3 131184478 131184514 -28415269 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 2 1585 783 116 0 30 chr3 131184514 131184647 -28415136 - B1_Mus1 SINE Alu -13 135 7 2 1585 281 315 0 0 chr3 131184664 131184737 -28415046 - ID2 SINE ID -10 73 1 2 1585 441 0 0 0 chr3 131184776 131184825 -28414958 + (TG)n Simple_repeat Simple_repeat 1 49 0 2 1585 317 286 8 153 chr3 131184827 131184951 -28414832 - RSINE1 SINE B4 -16 149 44 2 1585 667 204 42 7 chr3 131186068 131186211 -28413572 - B1_Mur1 SINE Alu -1 148 1 2 1585 720 239 18 35 chr3 131186234 131186460 -28413323 - B4A SINE B4 -68 224 3 2 1585 221 271 0 20 chr3 131186604 131186653 -28413130 - MIRm SINE MIR -73 203 156 2 1585 411 311 28 28 chr3 131187104 131187285 -28412498 + B4A SINE B4 3 182 -110 2 1585 268 267 108 10 chr3 131187196 131187298 -28412485 + PB1D10 SINE Alu 6 117 0 2 1585 493 213 115 0 chr3 131188225 131188347 -28411436 - B1F2 SINE Alu -1 148 13 2 1585 527 237 106 58 chr3 131188353 131188407 -28411376 - B3A SINE B2 -1 197 149 2 1585 2501 63 38 0 chr3 131188407 131188722 -28411061 + ORR1A2 LTR MaLR 1 327 0 2 1585 527 237 106 58 chr3 131188722 131188855 -28410928 - B3A SINE B2 -50 148 1 2 1585 458 339 15 0 chr3 131189006 131189136 -28410647 + ID_B1 SINE B4 1 132 -92 2 1585 910 131 0 10 chr3 131189132 131189302 -28410481 - ORR1B2 LTR MaLR -58 320 156 2 1585 1124 48 14 7 chr3 131189509 131189655 -28410128 + B1_Mus2 SINE Alu 1 147 0 2 1585 357 250 134 0 chr3 131190684 131190796 -28408987 - B3A SINE B2 -48 150 24 2 1585 598 248 27 7 chr3 131190829 131190975 -28408808 - B1_Mur1 SINE Alu 0 149 1 2 1585 233 287 19 47 chr3 131191332 131191438 -28408345 + CT-rich Low_complexity Low_complexity 3 105 0 2 1585 1392 86 5 0 chr3 131191525 131191711 -28408072 - B2_Mm1t SINE B2 -5 188 2 2 1585 33 66 0 0 chr3 131191815 131191876 -28407907 + AT_rich Low_complexity Low_complexity 1 61 0 2 1585 721 212 22 7 chr3 131191959 131192097 -28407686 + B1_Mur2 SINE Alu 2 141 -8 2 1585 267 265 65 49 chr3 131192144 131192267 -28407516 - MIRb SINE MIR -31 237 113 2 1585 483 18 0 0 chr3 131192313 131192369 -28407414 + (TG)n Simple_repeat Simple_repeat 2 57 0 2 1585 384 88 0 0 chr3 131193020 131193077 -28406706 + (TG)n Simple_repeat Simple_repeat 2 58 0 2 1585 430 202 20 20 chr3 131194315 131194416 -28405367 - L1MCa LINE L1 -1495 4826 4726 2 1585 1181 55 7 0 chr3 131194426 131194571 -28405212 - B1_Mus2 SINE Alu -1 146 1 2 1585 512 29 29 0 chr3 131194615 131194684 -28405099 + (TATG)n Simple_repeat Simple_repeat 2 72 0 3 1585 2617 179 44 0 chr3 131194688 131195167 -28404616 - Lx5 LINE L1 -16 7034 6535 3 1585 781 235 122 45 chr3 131195167 131195479 -28404304 - L1MCa LINE L1 -1598 4723 4388 2 1585 266 231 62 25 chr3 131195496 131195576 -28404207 - L1MCa LINE L1 -6287 221 139 2 1585 4146 117 6 12 chr3 131195577 131196269 -28403514 - RMER6A LTR ERVK 0 756 69 3 1585 261 57 0 0 chr3 131196269 131196304 -28403479 + (TATG)n Simple_repeat Simple_repeat 2 36 0 3 1585 245 171 182 0 chr3 131196308 131196396 -28403387 - Lx5 LINE L1 -16 7034 6931 3 1585 397 102 0 0 chr3 131196403 131196462 -28403321 - RMER6A LTR ERVK -402 59 1 3 1585 404 254 0 119 chr3 131196480 131196614 -28403169 - L1MCa LINE L1 -6384 124 7 2 1585 191 286 20 0 chr3 131197492 131197541 -28402242 - MIRb SINE MIR -193 75 26 2 1585 257 273 88 35 chr3 131197688 131197802 -28401981 + MER20 DNA MER1_type 5 124 -95 3 1585 1358 243 75 0 chr3 131197832 131197940 -28401843 - Lx5 LINE L1 -598 6862 6739 3 1585 306 0 0 0 chr3 131197940 131197974 -28401809 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 3 1585 3231 196 65 79 chr3 131197974 131199007 -28400776 - Lx5 LINE L1 -722 6738 5460 3 1585 277 133 0 0 chr3 131199008 131199053 -28400730 - L1_Mur2 LINE L1 -386 5494 5450 3 1585 816 69 0 0 chr3 131199078 131199194 -28400589 - B1_Mus1 SINE Alu 0 148 33 3 1585 654 158 0 0 chr3 131199194 131199295 -28400488 - L1_Mur2 LINE L1 -438 5439 5339 3 1585 22 0 0 0 chr3 131199351 131199373 -28400410 + AT_rich Low_complexity Low_complexity 1 22 0 3 1585 735 143 110 22 chr3 131199393 131199529 -28400254 + B1_Mur4 SINE Alu 3 150 0 3 1585 669 231 7 7 chr3 131200088 131200168 -28399615 + ID SINE ID 2 81 -143 3 1585 255 292 14 0 chr3 131200168 131200240 -28399543 + PB1D10 SINE Alu 1 73 -44 3 1585 2788 276 142 16 chr3 131200248 131201383 -28398400 + Lx7 LINE L1 6060 7353 -343 3 1585 324 48 0 0 chr3 131201390 131201432 -28398351 + (TG)n Simple_repeat Simple_repeat 2 43 0 3 1585 23 33 0 0 chr3 131201586 131201616 -28398167 + AT_rich Low_complexity Low_complexity 1 30 0 3 1585 298 277 129 35 chr3 131201681 131201797 -28397986 + B1F SINE Alu 10 136 -13 3 1585 527 122 0 11 chr3 131202410 131202501 -28397282 + (TC)n Simple_repeat Simple_repeat 1 90 0 3 1585 222 116 0 0 chr3 131202502 131202545 -28397238 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 198 4619 125 21 10 chr3 131202954 131203747 -28396036 + RMER12 LTR ERVK 1 802 -520 3 1586 344 252 163 25 chr3 131203750 131203953 -28395830 + RLTR21 LTR ERVK 1341 1571 -1 3 1586 275 331 37 55 chr3 131204436 131204599 -28395184 + RMER15 LTR ERVL 409 568 -7 3 1586 234 235 81 12 chr3 131204659 131204745 -28395038 - MIR SINE MIR -85 177 86 3 1586 1101 54 47 7 chr3 131204843 131205274 -28394509 + (CA)n Simple_repeat Simple_repeat 1 448 0 3 1586 279 283 0 71 chr3 131205282 131205317 -28394466 - B4A SINE B4 -115 177 86 3 1586 325 250 0 0 chr3 131205317 131205381 -28394402 - PB1D7 SINE Alu -56 64 1 3 1586 234 300 33 0 chr3 131205646 131205736 -28394047 + MTEb LTR MaLR 279 371 -8 3 1586 2272 61 39 60 chr3 131205738 131206070 -28393713 - ORR1A4 LTR MaLR 0 329 5 3 1586 24 0 0 0 chr3 131206405 131206429 -28393354 + AT_rich Low_complexity Low_complexity 1 24 0 3 1586 339 148 344 22 chr3 131206537 131206627 -28393156 + PB1D9 SINE Alu 2 120 0 3 1586 1653 196 36 9 chr3 131206708 131207043 -28392740 - Lx6 LINE L1 -28 7432 7089 3 1586 681 249 37 21 chr3 131207053 131207206 -28392577 + Lx5 LINE L1 6517 6666 -794 3 1586 2532 80 61 13 chr3 131207206 131207598 -28392185 + IAPLTR2a LTR ERVK 1 411 0 3 1586 681 249 37 21 chr3 131207598 131207633 -28392150 + Lx5 LINE L1 6667 6707 -753 3 1586 3663 62 3 13 chr3 131207635 131208324 -28391459 + IAPEz-int LTR ERVK 17 662 -5819 3 1586 929 76 0 0 chr3 131208324 131208443 -28391340 + IAPEz-int LTR ERVK 1359 1477 -5004 3 1586 1891 93 0 0 chr3 131208444 131208690 -28391093 + IAPEz-int LTR ERVK 2252 2497 -5183 3 1586 15526 36 3 3 chr3 131208708 131210511 -28389272 + IAPEz-int LTR ERVK 4678 6481 0 3 1586 2521 106 32 22 chr3 131210511 131210918 -28388865 + IAPLTR2a LTR ERVK 1 411 0 3 1586 315 222 0 0 chr3 131210919 131210982 -28388801 + Lx7 LINE L1 6673 6735 -961 3 1586 492 187 140 0 chr3 131210982 131211089 -28388694 + IAPEY3_LTR LTR ERVK 1 122 -210 3 1586 1549 41 3 191 chr3 131211089 131211419 -28388364 + RLTR10 LTR ERVK 121 388 -2 3 1586 822 240 46 15 chr3 131211420 131211696 -28388087 + Lx5 LINE L1 6456 6899 -561 3 1586 7808 151 38 15 chr3 131211718 131214169 -28385614 - Lx5 LINE L1 0 7050 4528 3 1586 1895 106 63 0 chr3 131214171 131214473 -28385310 + ORR1A4 LTR MaLR 1 321 -8 3 1586 1745 131 48 0 chr3 131214475 131214765 -28385018 + ORR1A4-int LTR MaLR 12 315 -1648 3 1586 449 86 14 0 chr3 131214756 131214826 -28384957 - ORR1A2 LTR MaLR -24 303 233 3 1586 327 280 10 29 chr3 131214963 131215066 -28384717 - PB1D10 SINE Alu -1 116 16 3 1586 455 288 0 23 chr3 131215391 131215519 -28384264 + B1F1 SINE Alu 3 127 -22 3 1586 253 209 0 107 chr3 131215494 131215569 -28384214 + B1F SINE Alu 77 143 -6 3 1586 293 325 9 17 chr3 131215870 131215986 -28383797 + CT-rich Low_complexity Low_complexity 4 118 0 3 1586 296 284 73 9 chr3 131216000 131216110 -28383673 - PB1D10 SINE Alu 0 117 1 3 1586 869 292 64 25 chr3 131216339 131216620 -28383163 - B4A SINE B4 0 292 1 3 1586 213 260 0 0 chr3 131217357 131217434 -28382349 + (TG)n Simple_repeat Simple_repeat 1 77 0 3 1586 336 111 0 0 chr3 131217451 131217514 -28382269 + (CA)n Simple_repeat Simple_repeat 2 64 0 3 1586 499 289 13 0 chr3 131217545 131217694 -28382089 - B3A SINE B2 -46 152 2 3 1586 5050 182 19 25 chr3 131217745 131218679 -28381104 + Lx9 LINE L1 6548 7476 -168 3 1586 270 0 0 0 chr3 131218679 131218709 -28381074 + (CA)n Simple_repeat Simple_repeat 2 31 0 3 1586 2005 96 18 66 chr3 131218771 131219105 -28380678 + ORR1A4 LTR MaLR 1 318 -8 3 1586 11644 132 5 84 chr3 131219109 131221241 -28378542 + ORR1A4-int LTR MaLR 1 1963 0 3 1586 2101 116 28 21 chr3 131221241 131221568 -28378215 + ORR1A4 LTR MaLR 1 329 0 3 1586 556 225 46 92 chr3 131221659 131221855 -28377928 - B3A SINE B2 -1 197 11 3 1586 2817 89 40 5 chr3 131222049 131222446 -28377337 - RLTR9F LTR ERVK -4 411 1 3 1586 441 0 0 0 chr3 131222467 131222516 -28377267 + (TA)n Simple_repeat Simple_repeat 2 50 0 3 1586 256 317 121 6 chr3 131222654 131222819 -28376964 - L1MC3 LINE L1 -559 7226 7043 3 1586 410 224 129 0 chr3 131222849 131222965 -28376818 - L1MC3 LINE L1 -779 7006 6876 3 1586 3156 65 5 2 chr3 131222977 131223376 -28376407 + MTB LTR MaLR 1 400 0 3 1586 534 291 17 41 chr3 131223436 131223608 -28376175 - ID_B1 SINE B4 0 224 57 3 1586 457 232 40 8 chr3 131223637 131223763 -28376020 - L1MC3 LINE L1 -932 6853 6724 3 1586 245 313 45 0 chr3 131224065 131224132 -28375651 - B1_Mur1 SINE Alu -1 148 79 3 1586 282 87 0 0 chr3 131224697 131224743 -28375040 + (A)n Simple_repeat Simple_repeat 1 46 0 3 1586 184 280 161 39 chr3 131225340 131225470 -28374313 + L3 LINE CR1 3693 3838 -651 3 1586 248 298 67 9 chr3 131225980 131226085 -28373698 + L1MC5 LINE L1 6658 6768 -1193 3 1586 855 168 0 0 chr3 131226354 131226491 -28373292 + B1_Mus2 SINE Alu 11 147 0 3 1586 345 47 0 0 chr3 131226502 131226545 -28373238 + (GAAA)n Simple_repeat Simple_repeat 4 46 0 3 1586 244 111 37 0 chr3 131226669 131226723 -28373060 + (TG)n Simple_repeat Simple_repeat 1 56 0 3 1586 360 0 0 0 chr3 131226859 131226899 -28372884 + (TG)n Simple_repeat Simple_repeat 1 40 0 3 1586 26 30 0 0 chr3 131228026 131228059 -28371724 + GC_rich Low_complexity Low_complexity 1 33 0 3 1586 262 318 72 41 chr3 131228770 131228953 -28370830 + MIRb SINE MIR 16 214 -54 3 1586 721 187 115 21 chr3 131229103 131229294 -28370489 - B3 SINE B2 -4 212 4 3 1586 240 195 53 25 chr3 131230200 131230275 -28369508 - MIRm SINE MIR -92 184 102 3 1586 2370 8 0 0 chr3 131230276 131230532 -28369251 + MERVL-int LTR ERVL 1675 1930 -3555 3 1586 441 18 0 0 chr3 131230532 131230587 -28369196 + MT-int LTR MaLR 676 730 -368 3 1586 5812 11 0 0 chr3 131230587 131231232 -28368551 - MERVL-int LTR ERVL -3939 1546 902 3 1586 23 0 0 0 chr3 131231842 131231865 -28367918 + AT_rich Low_complexity Low_complexity 1 23 0 3 1586 250 365 46 9 chr3 131232992 131233100 -28366683 + MIRc SINE MIR 45 156 -112 3 1586 425 258 88 31 chr3 131233617 131233777 -28366006 + ORR1E LTR MaLR 4 172 -187 3 1586 256 289 0 50 chr3 131233933 131233957 -28365826 + MER3 DNA MER1_type 27 46 -163 3 1586 323 250 229 0 chr3 131233957 131234053 -28365730 - MER3 DNA MER1_type 0 209 92 3 1586 1160 27 0 13 chr3 131234435 131234514 -28365269 + (TTC)n Simple_repeat Simple_repeat 1 78 0 3 1586 1284 84 0 0 chr3 131234514 131234693 -28365090 + (TCC)n Simple_repeat Simple_repeat 2 180 0 3 1586 1160 27 0 13 chr3 131234693 131234762 -28365021 + (TTC)n Simple_repeat Simple_repeat 1 69 0 3 1586 417 298 40 8 chr3 131234805 131234930 -28364853 + MER20 DNA MER1_type 83 211 -8 3 1586 251 324 137 23 chr3 131235642 131235898 -28363885 - L1M2b LINE L1 -6722 487 203 3 1586 461 296 28 14 chr3 131236164 131236308 -28363475 - ID_B1 SINE B4 0 224 79 3 1586 364 299 122 63 chr3 131237040 131237261 -28362522 - Charlie2a DNA MER1_type -2549 312 79 3 1586 894 219 32 11 chr3 131237271 131237460 -28362323 + B3A SINE B2 3 195 -3 3 1586 519 312 11 12 chr3 131237466 131237635 -28362148 + ID_B1 SINE B4 83 250 -42 3 1586 474 298 91 9 chr3 131237635 131237865 -28361918 + L1M3e LINE L1 7 255 -6775 3 1586 246 318 71 0 chr3 131238123 131238249 -28361534 + L1_Mur3 LINE L1 2416 2550 -3330 3 1586 355 270 166 5 chr3 131238262 131238467 -28361316 + L1M3e LINE L1 4387 4624 -2476 3 1586 701 234 119 18 chr3 131238479 131238738 -28361045 - RLTR12B LTR ERVK 0 568 293 3 1586 1166 190 242 6 chr3 131238818 131239152 -28360631 - MTD LTR MaLR -6 413 1 3 1586 480 48 0 0 chr3 131239212 131239275 -28360508 + (TG)n Simple_repeat Simple_repeat 1 63 0 3 1586 523 229 0 24 chr3 131239278 131239403 -28360380 + L1MA5 LINE L1 5709 5830 -470 3 1586 8298 66 5 2 chr3 131239396 131240443 -28359340 + L1_Mus3 LINE L1 5589 6638 0 3 1586 300 282 39 0 chr3 131240446 131240549 -28359234 + Lx8 LINE L1 5780 5886 -1587 3 1586 414 0 0 0 chr3 131240597 131240643 -28359140 + (CA)n Simple_repeat Simple_repeat 1 46 0 3 1586 348 24 0 0 chr3 131240849 131240890 -28358893 + (TG)n Simple_repeat Simple_repeat 1 41 0 3 1586 2077 128 13 76 chr3 131240930 131241310 -28358473 - ORR1B1 LTR MaLR 0 394 39 3 1586 745 293 104 33 chr3 131241375 131241710 -28358073 + L1M3e LINE L1 5547 5905 -1198 3 1586 263 320 67 73 chr3 131241961 131242126 -28357657 + MIR SINE MIR 59 222 -40 4 1586 255 224 35 0 chr3 131242440 131242498 -28357285 + PB1D10 SINE Alu 56 115 -2 4 1586 296 322 26 83 chr3 131243914 131243943 -28355840 + ID_B1 SINE B4 78 221 0 4 1586 448 331 0 0 chr3 131243943 131244067 -28355716 + B1F SINE Alu 26 149 0 4 1586 387 137 0 0 chr3 131245843 131245916 -28353867 + (CA)n Simple_repeat Simple_repeat 2 74 0 4 1586 507 112 0 0 chr3 131246295 131246375 -28353408 + (TG)n Simple_repeat Simple_repeat 1 80 0 4 1586 426 252 252 0 chr3 131246375 131246498 -28353285 - B3A SINE B2 -44 154 1 4 1586 473 223 125 0 chr3 131247495 131247607 -28352176 - RSINE1 SINE B4 -28 137 12 4 1586 468 244 24 32 chr3 131247718 131247841 -28351942 - MER82 DNA MER2_type -531 122 1 4 1586 480 141 0 59 chr3 131249005 131249127 -28350656 - B1_Mur3 SINE Alu -2 147 41 4 1586 619 168 116 16 chr3 131249492 131249613 -28350170 - B1F2 SINE Alu -5 144 12 4 1586 634 243 71 7 chr3 131249910 131250051 -28349732 + B3 SINE B2 61 210 -6 4 1586 223 133 22 22 chr3 131250082 131250128 -28349655 + (CAAA)n Simple_repeat Simple_repeat 2 47 0 4 1586 243 0 0 0 chr3 131250454 131250481 -28349302 + (TTTA)n Simple_repeat Simple_repeat 3 29 0 4 1586 288 91 0 0 chr3 131250481 131250524 -28349259 + (TG)n Simple_repeat Simple_repeat 1 44 0 4 1586 486 264 62 0 chr3 131250524 131250653 -28349130 - RSINE1 SINE B4 -24 141 5 4 1586 513 309 62 24 chr3 131250683 131250892 -28348891 - ID_B1 SINE B4 -2 222 6 4 1586 254 326 49 93 chr3 131250955 131251117 -28348666 - RMER30 DNA MER1_type -43 159 5 4 1586 297 0 0 0 chr3 131251919 131251952 -28347831 + (TTA)n Simple_repeat Simple_repeat 2 34 0 4 1586 862 196 90 35 chr3 131252412 131252613 -28347170 - B3 SINE B2 -4 212 1 4 1586 226 270 53 26 chr3 131253809 131253885 -28345898 - MER21B LTR ERV1 -505 358 281 4 1586 419 304 88 20 chr3 131253952 131254100 -28345683 - MER21B LTR ERV1 -692 171 14 4 1586 209 33 33 0 chr3 131254367 131254397 -28345386 + (TG)n Simple_repeat Simple_repeat 2 32 0 4 1586 273 300 28 14 chr3 131254399 131254470 -28345313 - B3A SINE B2 -110 88 17 4 1586 642 198 81 16 chr3 131254493 131254616 -28345167 - B1_Mur1 SINE Alu -1 148 18 4 1586 352 231 83 0 chr3 131254697 131254818 -28344965 + (CAGG)n Simple_repeat Simple_repeat 3 133 0 4 1586 348 351 65 18 chr3 131255255 131255423 -28344360 - MER21B LTR ERV1 -396 467 292 4 1586 539 303 84 35 chr3 131255446 131255648 -28344135 - MER21B LTR ERV1 -647 216 5 4 1586 846 128 0 85 chr3 131255830 131255983 -28343800 - B1_Mur4 SINE Alu -6 144 5 4 1586 198 0 0 0 chr3 131257113 131257135 -28342648 + (TTTG)n Simple_repeat Simple_repeat 1 22 0 4 1586 22 0 0 0 chr3 131257388 131257410 -28342373 + AT_rich Low_complexity Low_complexity 1 22 0 4 1586 1235 163 0 0 chr3 131257410 131257612 -28342171 - B3 SINE B2 -13 203 2 4 1586 1300 112 11 0 chr3 131257935 131258123 -28341660 - B2_Mm1t SINE B2 0 193 4 4 1586 232 321 81 97 chr3 131259371 131259557 -28340226 + MIR SINE MIR 50 232 -30 4 1586 181 354 25 42 chr3 131259639 131259757 -28340026 + MIR SINE MIR 105 220 -42 4 1586 1290 81 0 40 chr3 131260702 131261262 -28338521 + (CA)n Simple_repeat Simple_repeat 1 537 0 4 1586 252 274 0 75 chr3 131261263 131261330 -28338453 + B4A SINE B4 227 288 -4 4 1586 253 277 0 46 chr3 131261480 131261567 -28338216 - L1MC LINE L1 -422 5911 5829 4 1586 315 172 78 0 chr3 131261701 131261765 -28338018 - L1MC LINE L1 -2382 5403 5335 4 1586 349 233 130 26 chr3 131261795 131261949 -28337834 - L1M3 LINE L1 -1499 4641 4472 4 1586 299 231 42 8 chr3 131261918 131262036 -28337747 - L1MC LINE L1 -843 5303 5182 4 1586 330 309 195 4 chr3 131262038 131262269 -28337514 + Kanga2_a DNA Tc2 122 396 -492 4 1586 406 245 65 9 chr3 131264520 131264627 -28335156 - B1_Mur1 SINE Alu -1 148 36 4 1586 197 328 0 15 chr3 131264645 131264713 -28335070 + MER5A DNA MER1_type 123 189 0 4 1586 24 0 0 0 chr3 131265635 131265659 -28334124 + AT_rich Low_complexity Low_complexity 1 24 0 4 1586 225 0 0 0 chr3 131265707 131265732 -28334051 + (CA)n Simple_repeat Simple_repeat 2 26 0 4 1586 456 266 42 35 chr3 131265735 131265879 -28333904 + B1_Mur2 SINE Alu 5 149 0 4 1586 642 277 60 32 chr3 131266087 131266370 -28333413 + B4A SINE B4 2 292 0 4 1586 815 40 0 0 chr3 131266551 131266651 -28333132 - B1_Mus2 SINE Alu 0 147 48 4 1586 299 173 10 156 chr3 131266586 131266682 -28333101 - RLTR25B LTR ERVK -520 508 427 4 1586 7811 93 12 7 chr3 131266752 131268124 -28331659 - Lx LINE L1 0 6654 5275 4 1586 859 135 50 0 chr3 131268130 131268271 -28331512 - B1_Mur4 SINE Alu -2 148 1 4 1586 458 310 21 0 chr3 131268288 131268433 -28331350 + CT-rich Low_complexity Low_complexity 3 150 0 4 1586 227 306 64 96 chr3 131268513 131268543 -28331240 - B2_Mm2 SINE B2 -12 183 2 4 1586 567 316 32 0 chr3 131268543 131268701 -28331082 - RSINE1 SINE B4 0 165 3 4 1586 241 277 0 0 chr3 131269205 131269252 -28330531 - tRNA-Ala-GCY_ tRNA tRNA -7 68 22 4 1586 977 148 7 7 chr3 131269367 131269517 -28330266 - B1_Mur4 SINE Alu 0 150 1 4 1586 193 207 77 108 chr3 131270811 131270876 -28328907 - L2c LINE L2 -13 3374 3312 4 1586 225 260 62 80 chr3 131271379 131271492 -28328291 + ORR1A1-int LTR MaLR 1505 1615 -177 4 1586 906 25 25 0 chr3 131271550 131271671 -28328112 + (TCTCCC)n Simple_repeat Simple_repeat 5 128 0 4 1586 213 65 0 0 chr3 131271690 131271721 -28328062 + (TCTG)n Simple_repeat Simple_repeat 2 32 0 4 1586 692 144 19 0 chr3 131271721 131271825 -28327958 - B1_Mur1 SINE Alu -10 139 34 4 1586 588 203 130 7 chr3 131272263 131272314 -28327469 - MT2A LTR ERVL 0 533 467 4 1586 189 0 0 0 chr3 131272314 131272335 -28327448 + (TCTA)n Simple_repeat Simple_repeat 2 22 0 4 1586 588 233 119 14 chr3 131272335 131272494 -28327289 - MT2A LTR ERVL -53 548 362 4 1586 369 62 0 0 chr3 131272980 131273028 -28326755 + (TCCCC)n Simple_repeat Simple_repeat 3 50 0 4 1586 492 32 0 0 chr3 131274178 131274240 -28325543 + (TTCC)n Simple_repeat Simple_repeat 2 63 0 4 1586 401 287 46 0 chr3 131274241 131274349 -28325434 - PB1D7 SINE Alu -6 114 2 4 1586 429 131 0 0 chr3 131275053 131275137 -28324646 + (TTCA)n Simple_repeat Simple_repeat 2 85 0 4 1586 369 326 88 83 chr3 131277324 131277732 -28322051 - L1MC5 LINE L1 -45 7916 7507 4 1586 25 53 0 18 chr3 131277741 131277780 -28322003 + AT_rich Low_complexity Low_complexity 1 39 0 4 1586 6257 133 27 59 chr3 131277780 131278423 -28321360 - Lx2B LINE L1 -4 6996 6349 4 1586 180 0 0 0 chr3 131278423 131278443 -28321340 + (TAAAA)n Simple_repeat Simple_repeat 2 21 0 4 1586 6257 133 27 59 chr3 131278443 131278923 -28320860 - Lx2B LINE L1 -652 6348 5909 4 1586 25 53 0 18 chr3 131278923 131278940 -28320843 + AT_rich Low_complexity Low_complexity 1 17 0 4 1586 1250 48 0 0 chr3 131279318 131279465 -28320318 - B1_Mus2 SINE Alu 0 147 1 4 1586 253 243 43 0 chr3 131279478 131279548 -28320235 - ID4_ SINE ID -10 73 1 4 1586 377 385 57 32 chr3 131279591 131279905 -28319878 + MER2 DNA MER2_type 3 324 -21 4 1586 486 0 0 0 chr3 131279930 131279984 -28319799 + (TC)n Simple_repeat Simple_repeat 1 54 0 4 1586 256 314 44 38 chr3 131279984 131280136 -28319647 - L1MC5 LINE L1 -1239 6643 6490 4 1586 739 208 82 18 chr3 131280932 131281103 -28318680 + B3A SINE B2 1 182 -16 4 1586 17736 48 1 2 chr3 131282563 131285439 -28314344 - L1Md_F2 LINE L1 0 6582 3709 4 1586 511 249 26 78 chr3 131285987 131286179 -28313604 - B3A SINE B2 -16 182 1 4 1586 1546 163 183 0 chr3 131287413 131287763 -28312020 + MTD LTR MaLR 1 414 -5 4 1586 411 248 81 24 chr3 131287992 131288116 -28311667 - ID_B1 SINE B4 -8 216 86 4 1586 404 256 68 59 chr3 131288257 131288441 -28311342 + B4A SINE B4 81 271 -21 4 1586 277 227 0 0 chr3 131288486 131288561 -28311222 + (CA)n Simple_repeat Simple_repeat 2 76 0 4 1586 761 252 162 37 chr3 131288565 131288948 -28310835 + BGLII_B LTR ERVK 1 431 -10 4 1586 321 82 0 0 chr3 131288963 131289012 -28310771 + (CA)n Simple_repeat Simple_repeat 2 50 0 4 1586 345 283 156 27 chr3 131290219 131290444 -28309339 - LTR16A LTR ERVL -192 259 6 4 1586 588 237 141 0 chr3 131290977 131291133 -28308650 - B3 SINE B2 -38 178 1 4 1586 421 283 150 10 chr3 131291145 131291345 -28308438 - MIR SINE MIR -14 248 21 4 1586 180 0 0 0 chr3 131291628 131291648 -28308135 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 4 1586 685 167 21 64 chr3 131291649 131291790 -28307993 - B1_Mur1 SINE Alu -13 136 2 4 1586 273 296 69 112 chr3 131292341 131292501 -28307282 - MER31A LTR ERV1 -79 406 254 4 1586 405 276 118 0 chr3 131293146 131293273 -28306510 - B1F SINE Alu -5 144 3 4 1586 412 264 0 68 chr3 131294965 131295083 -28304700 + B1_Mur1 SINE Alu 1 110 -39 4 1586 414 57 0 0 chr3 131295094 131295147 -28304636 + (CATA)n Simple_repeat Simple_repeat 4 56 0 4 1586 296 289 88 0 chr3 131295264 131295378 -28304405 + PB1 SINE Alu 2 125 -2 4 1586 200 152 43 0 chr3 131295465 131295511 -28304272 + (CATA)n Simple_repeat Simple_repeat 4 51 0 4 1586 558 256 30 0 chr3 131295795 131295928 -28303855 - B1_Mur1 SINE Alu -2 147 11 4 1586 246 296 19 75 chr3 131295839 131295945 -28303838 - B4A SINE B4 -115 177 78 4 1586 553 214 34 41 chr3 131296291 131296437 -28303346 + ID_B1 SINE B4 79 223 -1 4 1586 207 100 0 0 chr3 131296550 131296580 -28303203 + (CATG)n Simple_repeat Simple_repeat 1 30 0 4 1586 310 277 11 11 chr3 131297110 131297207 -28302576 + B4A SINE B4 2 98 -194 4 1586 641 243 27 48 chr3 131297207 131297393 -28302390 + B3A SINE B2 1 182 -16 4 1586 345 289 154 7 chr3 131297472 131297608 -28302175 + B4 SINE B4 131 286 -6 4 1586 423 0 0 0 chr3 131297691 131297738 -28302045 + (CA)n Simple_repeat Simple_repeat 1 47 0 4 1586 186 133 0 0 chr3 131298543 131298573 -28301210 + (TTTTC)n Simple_repeat Simple_repeat 4 33 0 5 1586 26 0 0 0 chr3 131299708 131299734 -28300049 + AT_rich Low_complexity Low_complexity 1 26 0 5 1586 809 168 30 0 chr3 131299804 131299935 -28299848 + B1_Mur2 SINE Alu 5 139 -10 5 1586 216 67 0 0 chr3 131299990 131300020 -28299763 + (TG)n Simple_repeat Simple_repeat 1 30 0 5 1586 336 339 142 35 chr3 131300059 131300313 -28299470 - B4A SINE B4 -11 281 1 5 1586 25 51 0 0 chr3 131300533 131300572 -28299211 + AT_rich Low_complexity Low_complexity 1 39 0 5 1586 1040 192 20 20 chr3 131302536 131302738 -28297045 - B3 SINE B2 -14 202 1 5 1586 355 217 24 0 chr3 131304126 131304209 -28295574 - PB1D7 SINE Alu -1 119 35 5 1586 577 237 89 21 chr3 131304560 131304750 -28295033 - MLT1A LTR MaLR -169 205 3 5 1586 618 235 104 26 chr3 131305217 131305409 -28294374 + B3 SINE B2 2 208 -8 5 1586 218 330 98 54 chr3 131307581 131307693 -28292090 + PB1 SINE Alu 3 119 -8 5 1586 359 237 154 26 chr3 131307954 131308071 -28291712 + B1F2 SINE Alu 18 149 0 5 1586 799 92 0 15 chr3 131308073 131308206 -28291577 + (GGA)n Simple_repeat Simple_repeat 2 132 0 5 1586 21 0 0 0 chr3 131308991 131309012 -28290771 + AT_rich Low_complexity Low_complexity 1 21 0 5 1586 253 302 31 20 chr3 131309760 131309858 -28289925 - MER34A LTR ERV1 -468 103 5 5 1586 1041 169 94 0 chr3 131310069 131310270 -28289513 - URR1A DNA MER1_type -2 224 5 5 1586 295 296 31 0 chr3 131310365 131310463 -28289320 + MER58B DNA MER1_type 240 340 -1 5 1586 719 259 45 10 chr3 131311441 131311640 -28288143 - B3 SINE B2 -4 212 7 5 1586 23 33 0 0 chr3 131311671 131311701 -28288082 + AT_rich Low_complexity Low_complexity 1 30 0 5 1586 896 165 86 91 chr3 131311908 131312128 -28287655 - MTC LTR MaLR 0 421 203 5 1586 3759 63 0 14 chr3 131312367 131312849 -28286934 + L1Md_F2 LINE L1 6096 6570 -12 5 1586 326 303 71 0 chr3 131315744 131315843 -28283940 - PB1D7 SINE Alu 0 120 15 5 1586 397 247 77 36 chr3 131316200 131316368 -28283415 - L1ME3B LINE L1 -236 6004 5830 5 1586 651 199 0 18 chr3 131316625 131316759 -28283024 - B1_Mur2 SINE Alu 0 120 1 5 1586 234 0 0 0 chr3 131316790 131316816 -28282967 + (TG)n Simple_repeat Simple_repeat 2 27 0 5 1586 739 329 105 28 chr3 131319078 131319619 -28280164 + Zaphod DNA Tip100 149 731 -3300 5 1586 386 0 41 0 chr3 131319996 131320045 -28279738 + (TTTA)n Simple_repeat Simple_repeat 2 52 0 5 1586 541 129 19 29 chr3 131320048 131320152 -28279631 - B1_Mur4 SINE Alu -7 143 41 5 1586 236 391 26 32 chr3 131320246 131320402 -28279381 + Zaphod DNA Tip100 3742 3896 -135 5 1586 649 169 25 0 chr3 131320607 131320721 -28279062 + MTC LTR MaLR 1 117 -304 5 1586 1128 104 11 16 chr3 131320721 131320906 -28278877 - RLTR15 LTR ERVK 0 359 176 5 1586 412 97 0 16 chr3 131320911 131320974 -28278809 - MYSERV6-int LTR ERVK -2362 6597 6536 5 1586 25 51 0 0 chr3 131321001 131321040 -28278743 + AT_rich Low_complexity Low_complexity 1 39 0 5 1586 1568 227 78 21 chr3 131321288 131321773 -28278010 + RLTR11A2 LTR ERVK 1 513 -14 5 1586 317 104 0 0 chr3 131321820 131321868 -28277915 + MTC LTR MaLR 112 159 -262 5 1586 899 100 94 56 chr3 131321873 131322053 -28277730 + RMER6B LTR ERVK 275 461 0 5 1586 230 224 50 33 chr3 131322162 131322222 -28277561 - ID4_ SINE ID -21 62 2 5 1586 22 0 0 0 chr3 131323419 131323441 -28276342 + AT_rich Low_complexity Low_complexity 1 22 0 5 1586 23 0 0 0 chr3 131323881 131323904 -28275879 + AT_rich Low_complexity Low_complexity 1 23 0 5 1586 423 0 0 0 chr3 131324762 131324809 -28274974 + (TG)n Simple_repeat Simple_repeat 1 47 0 5 1586 305 276 20 0 chr3 131325115 131325213 -28274570 + MER3 DNA MER1_type 99 198 -11 5 1586 242 271 61 30 chr3 131325280 131325379 -28274404 - MLT1H2 LTR MaLR -3 486 385 5 1586 435 38 0 0 chr3 131326250 131326303 -28273480 + (TG)n Simple_repeat Simple_repeat 1 53 0 5 1586 473 264 94 34 chr3 131326406 131326555 -28273228 - RSINE1 SINE B4 -6 159 2 5 1586 2796 81 8 10 chr3 131327821 131328207 -28271576 + L1_Mus3 LINE L1 6253 6637 -1 5 1586 1998 196 40 130 chr3 131328518 131329117 -28270666 - RMER1B Other Other -371 695 151 5 1586 723 275 0 6 chr3 131329117 131329278 -28270505 - RMER1B Other Other -714 352 193 5 1586 23 33 0 0 chr3 131330847 131330877 -28268906 + AT_rich Low_complexity Low_complexity 1 30 0 5 1586 398 277 26 18 chr3 131330901 131331015 -28268768 - B1F SINE Alu -1 148 34 5 1586 874 238 0 43 chr3 131331535 131331746 -28268037 - Lx6 LINE L1 -26 7434 7233 5 1586 246 32 0 0 chr3 131331923 131331954 -28267829 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 5 1586 770 154 13 9 chr3 131332558 131332710 -28267073 + B2_Mm2 SINE B2 2 159 -34 5 1586 198 0 0 0 chr3 131332710 131332732 -28267051 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 5 1586 628 220 53 35 chr3 131332732 131332749 -28267034 + B2_Mm1t SINE B2 160 174 -19 5 1586 237 303 0 38 chr3 131332831 131332910 -28266873 + L1MC4 LINE L1 630 705 -5510 5 1586 593 262 53 12 chr3 131333083 131333253 -28266530 + B3A SINE B2 3 179 -19 5 1586 204 125 0 0 chr3 131333762 131333794 -28265989 + (A)n Simple_repeat Simple_repeat 1 32 0 5 198 422 387 56 30 chr3 131333974 131334578 -28265205 + L1MC4 LINE L1 2708 3327 -2887 5 1587 1195 35 14 0 chr3 131334847 131334992 -28264791 + B1_Mm SINE Alu 1 147 0 5 1587 26 0 0 0 chr3 131335008 131335034 -28264749 + AT_rich Low_complexity Low_complexity 1 26 0 5 1587 620 269 97 17 chr3 131336077 131336315 -28263468 + MER121 Unknown Unknown 56 312 -100 5 1587 242 309 38 68 chr3 131337222 131337354 -28262429 - MLT2B4 LTR ERVL -79 477 350 5 1587 257 350 89 30 chr3 131337422 131337590 -28262193 + MER5A DNA MER1_type 12 189 0 5 1587 260 321 129 45 chr3 131337956 131338158 -28261625 + B4A SINE B4 18 236 -56 5 1587 420 20 0 0 chr3 131338216 131338265 -28261518 + (CA)n Simple_repeat Simple_repeat 1 49 0 5 1587 218 356 18 71 chr3 131338408 131338520 -28261263 + MIR SINE MIR 29 134 -128 5 1587 272 267 17 0 chr3 131338522 131338582 -28261201 + MTE2a LTR MaLR 9 69 -310 5 1587 2971 143 46 2 chr3 131338582 131339085 -28260698 + RMER1B Other Other 529 1053 -13 5 1587 21 0 0 0 chr3 131339382 131339403 -28260380 + AT_rich Low_complexity Low_complexity 1 21 0 5 1587 455 338 23 0 chr3 131340577 131340710 -28259073 + RSINE1 SINE B4 2 137 -28 5 1587 351 65 0 0 chr3 131340743 131340789 -28258994 + (TAAG)n Simple_repeat Simple_repeat 1 46 0 5 1587 550 266 30 129 chr3 131341283 131341423 -28258360 - L1MA4 LINE L1 -49 6251 6140 5 1587 996 225 14 9 chr3 131341423 131341634 -28258149 - B3 SINE B2 -2 214 3 5 1587 550 266 30 129 chr3 131341634 131341856 -28257927 - L1MA4 LINE L1 -161 6139 5925 5 1587 1244 98 0 6 chr3 131341858 131342032 -28257751 + B2_Mm2 SINE B2 14 186 -9 5 1587 732 266 23 43 chr3 131342052 131342354 -28257429 - L1MA4 LINE L1 -394 5906 5611 5 1587 2306 279 30 11 chr3 131343171 131343897 -28255886 - Lx7 LINE L1 -384 7312 6573 5 1587 293 276 172 0 chr3 131343896 131343983 -28255800 + Lx7 LINE L1 6424 6525 -1171 5 1587 261 308 71 78 chr3 131344000 131344141 -28255642 - MIRb SINE MIR -116 152 13 5 1587 2160 204 0 28 chr3 131344169 131344550 -28255233 - RMER6D LTR ERVK 0 720 351 5 1587 700 31 0 21 chr3 131344550 131344647 -28255136 + (TTC)n Simple_repeat Simple_repeat 3 97 0 5 1587 2160 204 0 28 chr3 131344647 131344698 -28255085 - RMER6D LTR ERVK -370 350 300 5 1587 1068 167 39 0 chr3 131344694 131344874 -28254909 - RMER6D LTR ERVK -503 187 1 5 1587 428 298 129 12 chr3 131345138 131345301 -28254482 - B3A SINE B2 -16 182 1 5 1587 221 30 61 0 chr3 131346573 131346606 -28253177 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 5 1587 753 275 14 50 chr3 131346724 131346942 -28252841 - ID_B1 SINE B4 -4 220 11 5 1587 187 335 86 13 chr3 131347404 131347555 -28252228 + L2a LINE L2 2957 3118 -308 5 1587 1017 166 80 5 chr3 131347585 131347773 -28252010 + URR1A DNA MER1_type 20 221 -5 5 1587 259 376 26 20 chr3 131347851 131348003 -28251780 + L2a LINE L2 3267 3419 -7 5 1587 410 114 14 0 chr3 131348204 131348274 -28251509 + (CA)n Simple_repeat Simple_repeat 2 72 0 5 1587 1386 84 11 0 chr3 131350442 131350632 -28249151 - B2_Mm1a SINE B2 -1 192 1 5 1587 1978 152 19 60 chr3 131351888 131352266 -28247517 - ORR1B2 LTR MaLR -28 339 1 5 1587 248 375 24 40 chr3 131353805 131353930 -28245853 - MLT1K LTR MaLR -310 285 163 5 1587 24 0 0 0 chr3 131354004 131354028 -28245755 + AT_rich Low_complexity Low_complexity 1 24 0 5 1587 626 265 170 15 chr3 131354058 131354399 -28245384 - L1MA6 LINE L1 -24 6276 5883 5 1587 361 318 9 18 chr3 131354528 131354640 -28245143 - PB1D10 SINE Alu -1 116 6 5 1587 840 232 56 0 chr3 131355247 131355445 -28244338 - B3 SINE B2 -6 210 2 5 1587 258 256 17 25 chr3 131355447 131355567 -28244216 - Lx9 LINE L1 -5 7639 7521 5 1587 1335 313 48 41 chr3 131355721 131357030 -28242753 - L1_Mur3 LINE L1 -324 5556 4255 5 1587 1904 304 25 40 chr3 131357060 131357633 -28242150 - MTEa-int LTR MaLR -979 601 38 5 1587 2707 134 61 8 chr3 131357633 131358012 -28241771 - RLTR19 LTR ERVK 0 499 96 5 1587 288 0 0 0 chr3 131358012 131358044 -28241739 + (TG)n Simple_repeat Simple_repeat 1 32 0 5 1587 2707 134 61 8 chr3 131358044 131358138 -28241645 - RLTR19 LTR ERVK -404 95 2 5 1587 1904 304 25 40 chr3 131358138 131358164 -28241619 - MTEa-int LTR MaLR -1543 37 11 5 1587 642 276 115 90 chr3 131358172 131358538 -28241245 - MTEa LTR MaLR -4 375 1 5 1587 25 65 0 0 chr3 131359015 131359061 -28240722 + AT_rich Low_complexity Low_complexity 1 46 0 5 1587 1845 174 117 5 chr3 131359134 131359509 -28240274 + MTC LTR MaLR 1 417 -4 5 1587 1054 223 36 194 chr3 131360171 131360610 -28239173 + ORR1D1 LTR MaLR 5 374 0 5 1587 185 298 228 24 chr3 131361256 131361383 -28238400 - MIRm SINE MIR -122 154 2 5 1587 522 352 31 0 chr3 131362421 131362617 -28237166 - MIR SINE MIR -28 234 33 5 1587 297 0 0 0 chr3 131362857 131362890 -28236893 + (TC)n Simple_repeat Simple_repeat 1 33 0 5 1587 415 374 56 45 chr3 131363090 131363446 -28236337 - MLT1A1 LTR MaLR -38 370 11 5 1587 200 300 58 39 chr3 131363537 131363641 -28236142 - MIR3 SINE MIR -14 194 89 5 1587 301 250 31 0 chr3 131363657 131363721 -28236062 - ID4 SINE ID -16 67 2 6 1587 432 97 0 0 chr3 131363725 131363787 -28235996 + (TTA)n Simple_repeat Simple_repeat 2 63 0 6 1587 1103 80 0 0 chr3 131363787 131363924 -28235859 - B1_Mus2 SINE Alu -10 137 1 6 1587 285 321 28 9 chr3 131363950 131364057 -28235726 - PB1D10 SINE Alu -8 109 1 6 1587 940 154 148 5 chr3 131365179 131365368 -28234415 - B3 SINE B2 0 216 1 6 1587 3268 68 0 21 chr3 131365401 131365833 -28233950 - L1_Mus2 LINE L1 0 6566 6144 6 1587 455 90 0 0 chr3 131366374 131366441 -28233342 + L1_Mur1 LINE L1 4771 4837 -1049 6 1587 279 104 0 0 chr3 131366459 131366507 -28233276 + (CAAA)n Simple_repeat Simple_repeat 1 48 0 6 1587 1029 324 48 79 chr3 131366813 131367423 -28232360 + RLTR18 LTR ERVK 2 592 -24 6 1587 222 289 0 0 chr3 131368357 131368409 -28231374 + CT-rich Low_complexity Low_complexity 2 53 0 6 1587 470 314 126 57 chr3 131368952 131369286 -28230497 + MTEa LTR MaLR 6 362 -17 6 1587 33557 43 0 13 chr3 131369620 131374905 -28224878 + L1Md_T LINE L1 278 5589 -297 6 1587 8587 28 0 0 chr3 131374905 131375901 -28223882 + L1Md_T LINE L1 5590 6585 0 6 1587 357 62 0 0 chr3 131376343 131376391 -28223392 + (CAAA)n Simple_repeat Simple_repeat 2 49 0 6 1587 426 69 0 0 chr3 131377136 131377194 -28222589 + (TG)n Simple_repeat Simple_repeat 2 59 0 6 1587 509 264 112 90 chr3 131377201 131377434 -28222349 - B4 SINE B4 -12 280 43 6 1587 258 32 0 0 chr3 131377581 131377612 -28222171 + (TG)n Simple_repeat Simple_repeat 1 31 0 6 1587 261 0 0 0 chr3 131377954 131377983 -28221800 + (CAAA)n Simple_repeat Simple_repeat 3 31 0 6 1587 189 317 60 24 chr3 131378363 131378447 -28221336 + L2b LINE L2 3288 3374 -1 6 1587 479 318 171 0 chr3 131378531 131378748 -28221035 - MLT1C LTR MaLR -6 461 208 6 1587 14233 11 0 0 chr3 131379097 131380792 -28218991 + L1Md_A LINE L1 3892 5586 -297 6 1587 8752 18 0 0 chr3 131380792 131381788 -28217995 + L1Md_A LINE L1 5587 6582 0 6 1587 1381 227 117 17 chr3 131383148 131383506 -28216277 + MTD LTR MaLR 26 419 0 6 1587 250 227 33 33 chr3 131383551 131383642 -28216141 + Charlie7a DNA MER1_type 147 237 -35 6 1587 561 30 0 0 chr3 131384231 131384298 -28215485 + (TA)n Simple_repeat Simple_repeat 1 67 0 6 1587 917 277 28 49 chr3 131384344 131384629 -28215154 + B4 SINE B4 9 287 -5 6 1587 22 35 0 0 chr3 131384755 131384784 -28214999 + AT_rich Low_complexity Low_complexity 1 29 0 6 1587 224 288 14 0 chr3 131384792 131384865 -28214918 + CT-rich Low_complexity Low_complexity 3 76 0 6 1587 229 288 73 73 chr3 131384951 131385101 -28214682 - MIRm SINE MIR 0 276 127 6 1587 10132 72 22 26 chr3 131385424 131387952 -28211831 - Lx3_Mus LINE L1 -54 6955 4430 6 1587 1604 296 81 50 chr3 131387964 131389663 -28210120 - L1_Mur3 LINE L1 -2687 3193 1538 6 1587 621 72 0 0 chr3 131389812 131389895 -28209888 + (TA)n Simple_repeat Simple_repeat 2 84 0 6 1587 1095 288 22 9 chr3 131389908 131390223 -28209560 - Lx8 LINE L1 -189 7284 6966 6 1587 1147 180 24 5 chr3 131390312 131390519 -28209264 - B3 SINE B2 -5 211 1 6 1587 267 250 47 8 chr3 131390724 131390853 -28208930 - L1_Rod LINE L1 -6293 879 746 6 1587 346 294 8 8 chr3 131391599 131391719 -28208064 + GA-rich Low_complexity Low_complexity 1 120 0 6 1587 255 61 0 0 chr3 131392002 131392035 -28207748 + (TTTG)n Simple_repeat Simple_repeat 1 33 0 6 1587 228 260 179 52 chr3 131393568 131393702 -28206081 + MLT1A LTR MaLR 35 185 -189 6 1587 1288 100 6 0 chr3 131393786 131393966 -28205817 - B2_Mm2 SINE B2 -14 181 1 6 1587 192 125 0 0 chr3 131394614 131394646 -28205137 + (GGGGA)n Simple_repeat Simple_repeat 2 33 0 6 1587 385 215 0 0 chr3 131394940 131395005 -28204778 + ID4_ SINE ID 2 66 -17 6 1587 609 14 0 0 chr3 131395009 131395079 -28204704 + (TAAAA)n Simple_repeat Simple_repeat 1 70 0 6 1587 900 28 0 0 chr3 131395170 131395277 -28204506 + (TCTCC)n Simple_repeat Simple_repeat 4 110 0 6 1587 363 307 23 0 chr3 131395290 131395378 -28204405 + C-rich Low_complexity Low_complexity 2 91 0 6 1587 668 159 51 0 chr3 131395380 131395537 -28204246 + CT-rich Low_complexity Low_complexity 1 165 0 6 1587 364 306 0 30 chr3 131395537 131395638 -28204145 + polypyrimidine Low_complexity Low_complexity 2 99 0 6 1587 513 22 0 172 chr3 131395640 131395855 -28203928 + CT-rich Low_complexity Low_complexity 3 180 0 6 1587 294 156 0 0 chr3 131395851 131395915 -28203868 + (CTTTG)n Simple_repeat Simple_repeat 2 65 0 6 1587 781 148 0 16 chr3 131395920 131396044 -28203739 - B1_Mus2 SINE Alu -8 139 18 6 1587 198 0 0 0 chr3 131396044 131396066 -28203717 + (CCA)n Simple_repeat Simple_repeat 2 23 0 6 1587 226 312 31 0 chr3 131396099 131396195 -28203588 - Lx7 LINE L1 -19 7677 7579 6 1587 321 26 0 0 chr3 131396195 131396233 -28203550 + (CAAAA)n Simple_repeat Simple_repeat 1 38 0 6 1587 521 282 43 5 chr3 131396278 131396488 -28203295 - Lx7 LINE L1 -333 7363 7146 6 1587 26 50 0 0 chr3 131396653 131396693 -28203090 + AT_rich Low_complexity Low_complexity 1 40 0 6 1587 900 229 39 24 chr3 131396785 131396991 -28202792 + B3 SINE B2 2 210 -6 6 1587 584 252 15 0 chr3 131397237 131397372 -28202411 - ID_B1 SINE B4 -12 212 76 6 1587 498 266 9 0 chr3 131397531 131397640 -28202143 - PB1D10 SINE Alu -7 110 1 6 1587 630 262 24 0 chr3 131397847 131397973 -28201810 + B1F1 SINE Alu 1 129 -20 6 1587 279 0 0 0 chr3 131397977 131398008 -28201775 + (GA)n Simple_repeat Simple_repeat 2 32 0 6 1587 363 229 0 0 chr3 131398009 131398079 -28201704 + ID2 SINE ID 3 72 -11 6 1587 241 226 0 19 chr3 131398128 131398182 -28201601 + G-rich Low_complexity Low_complexity 3 55 0 6 1587 307 259 42 85 chr3 131398734 131398970 -28200813 - RMER17D LTR ERVK -492 397 172 6 1587 204 337 11 0 chr3 131399996 131400088 -28199695 + GA-rich Low_complexity Low_complexity 3 95 0 6 1587 239 286 137 43 chr3 131400451 131400568 -28199215 - MIRc SINE MIR -101 167 40 6 1587 342 0 0 0 chr3 131402890 131402928 -28196855 + (TC)n Simple_repeat Simple_repeat 2 39 0 6 1587 992 154 0 6 chr3 131403907 131404077 -28195706 + ORR1A1 LTR MaLR 1 169 -177 6 1587 289 244 1 16 chr3 131404095 131404176 -28195607 + L1M2 LINE L1 5149 5283 -860 6 1587 876 281 42 35 chr3 131404176 131404464 -28195319 + B4 SINE B4 2 291 -1 6 1587 397 276 16 134 chr3 131404464 131404861 -28194922 + L1M2 LINE L1 5227 5607 -684 6 1587 721 317 4 84 chr3 131404875 131405031 -28194752 + ORR1E LTR MaLR 105 244 -115 6 1587 225 0 0 0 chr3 131405031 131405056 -28194727 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 6 1587 721 317 4 84 chr3 131405056 131405174 -28194609 + ORR1E LTR MaLR 245 357 -2 6 1587 244 254 83 17 chr3 131405184 131405304 -28194479 + MER33 DNA MER1_type 175 302 -22 6 1587 1054 298 73 45 chr3 131406367 131406487 -28193296 + MLT1A0 LTR MaLR 1 116 -249 6 1587 3114 131 90 43 chr3 131406487 131406849 -28192934 + RMER6C LTR ERVK 4 373 -317 6 1587 516 56 0 0 chr3 131406849 131406921 -28192862 + (GA)n Simple_repeat Simple_repeat 1 72 0 6 1587 3114 131 90 43 chr3 131406921 131407214 -28192569 + RMER6C LTR ERVK 374 690 0 6 1587 1054 298 73 45 chr3 131407214 131407448 -28192335 + MLT1A0 LTR MaLR 117 365 0 6 1587 2185 163 47 20 chr3 131408863 131409269 -28190514 - Lx2B LINE L1 -1 6999 6583 6 1587 392 305 58 48 chr3 131409427 131409720 -28190063 - L1MA7 LINE L1 -325 5966 5671 6 1587 502 234 69 52 chr3 131409690 131409978 -28189805 - L1MA7 LINE L1 -734 5566 5274 6 1587 22 35 0 0 chr3 131410121 131410150 -28189633 + AT_rich Low_complexity Low_complexity 1 29 0 6 1587 371 306 29 12 chr3 131410277 131410456 -28189327 - Lx7 LINE L1 -2 7694 7532 6 1587 461 211 31 8 chr3 131410473 131410602 -28189181 - Lx7 LINE L1 0 7696 7565 6 1587 225 254 0 0 chr3 131410715 131410786 -28188997 + (CA)n Simple_repeat Simple_repeat 1 71 0 6 1587 827 222 24 10 chr3 131410803 131411008 -28188775 - Lx7 LINE L1 -292 7404 7197 6 1587 21 57 0 0 chr3 131411254 131411289 -28188494 + AT_rich Low_complexity Low_complexity 1 35 0 6 1587 1698 206 82 14 chr3 131412425 131412790 -28186993 - MTC LTR MaLR -8 413 24 6 1587 311 322 31 49 chr3 131413189 131413352 -28186431 - L1M5 LINE L1 -872 5274 5115 6 1587 491 295 110 25 chr3 131413754 131414109 -28185674 - L1MA5 LINE L1 -9 6291 5907 6 1587 1485 224 95 8 chr3 131414727 131415096 -28184687 + MTD LTR MaLR 5 405 -14 6 1587 3782 145 143 86 chr3 131416249 131417096 -28182687 + RMER19B LTR ERVK 1 895 -7 6 1587 714 281 196 22 chr3 131417303 131417620 -28182163 - ORR1D1 LTR MaLR 0 374 3 6 1587 313 210 118 82 chr3 131417780 131417915 -28181868 - RLTR42-int LTR ERVK -4155 1367 1228 6 1587 23 54 0 0 chr3 131419708 131419745 -28180038 + AT_rich Low_complexity Low_complexity 1 37 0 6 1587 351 0 0 0 chr3 131420402 131420441 -28179342 + (TGG)n Simple_repeat Simple_repeat 3 41 0 6 1587 661 295 145 30 chr3 131420493 131420565 -28179218 - B4 SINE B4 0 292 209 6 1587 468 0 0 0 chr3 131420565 131420617 -28179166 + (TC)n Simple_repeat Simple_repeat 1 52 0 6 1587 661 295 145 30 chr3 131420617 131420806 -28178977 - B4 SINE B4 -84 208 2 6 1587 417 379 118 6 chr3 131420880 131421050 -28178733 + LTR16B LTR ERVL 11 199 -264 6 1587 1298 267 49 9 chr3 131421779 131422136 -28177647 + MTD LTR MaLR 44 405 -14 6 1587 2102 245 77 38 chr3 131422140 131422807 -28176976 + MTD-int LTR MaLR 1 693 -565 6 1587 1528 188 96 8 chr3 131422776 131423151 -28176632 + MTD-int LTR MaLR 851 1258 0 6 1587 1360 271 62 16 chr3 131423151 131423523 -28176260 + MTD LTR MaLR 1 389 -30 6 1587 582 383 102 25 chr3 131423527 131423931 -28175852 - MLT1F2 LTR MaLR -120 440 6 6 1587 486 305 137 48 chr3 131424162 131424475 -28175308 - MER57D LTR ERV1 -59 352 12 6 1587 723 44 0 0 chr3 131426127 131426218 -28173565 + (GA)n Simple_repeat Simple_repeat 2 92 0 6 1587 219 211 0 53 chr3 131426568 131426643 -28173140 + CT-rich Low_complexity Low_complexity 3 73 0 6 1587 3968 42 4 0 chr3 131426660 131427137 -28172646 + L1_Mus1 LINE L1 6088 6566 -1 6 1587 243 309 135 26 chr3 131427235 131427391 -28172392 + MLT1A0 LTR MaLR 185 357 -8 6 1587 23 0 0 0 chr3 131427392 131427415 -28172368 + AT_rich Low_complexity Low_complexity 1 23 0 6 1587 239 342 14 0 chr3 131427415 131427488 -28172295 - Lx5 LINE L1 -108 6942 6869 6 1587 323 304 125 0 chr3 131427550 131427662 -28172121 - MER20 DNA MER1_type -40 179 54 6 1587 1297 25 0 12 chr3 131427666 131427828 -28171955 - L1Md_F2 LINE L1 -826 5756 5597 7 1587 6984 39 0 1 chr3 131427829 131428659 -28171124 + L1Md_F2 LINE L1 5748 6576 -6 7 1587 650 150 19 7 chr3 131428741 131428895 -28170888 + (TA)n Simple_repeat Simple_repeat 1 156 0 7 1587 245 100 98 22 chr3 131428941 131429033 -28170750 + (TA)n Simple_repeat Simple_repeat 1 99 0 7 1587 23 33 0 0 chr3 131429171 131429201 -28170582 + AT_rich Low_complexity Low_complexity 1 30 0 7 1587 253 329 12 35 chr3 131429229 131429314 -28170469 - B1F SINE Alu -66 83 1 7 1587 585 312 80 25 chr3 131429607 131429883 -28169900 - B4A SINE B4 0 292 2 7 1587 1973 167 3 11 chr3 131430154 131430341 -28169442 - L1_Mm LINE L1 -728 5155 4971 7 1587 180 0 0 0 chr3 131430341 131430361 -28169422 + (GAAA)n Simple_repeat Simple_repeat 1 20 0 7 1587 1973 167 3 11 chr3 131430361 131430554 -28169229 - L1_Mm LINE L1 -913 4970 4778 7 1587 7465 91 12 2 chr3 131430590 131432067 -28167716 + L1_Mus4 LINE L1 5176 6636 0 7 1587 456 328 57 28 chr3 131432448 131432624 -28167159 - B3A SINE B2 -16 182 2 7 1587 471 161 0 0 chr3 131434309 131434402 -28165381 - Lx5 LINE L1 -3 7047 6955 7 1587 394 141 0 34 chr3 131434491 131434579 -28165204 + C-rich Low_complexity Low_complexity 2 86 0 7 1587 381 227 133 22 chr3 131434720 131434855 -28164928 + MER2 DNA MER2_type 32 181 -164 7 1587 191 354 58 58 chr3 131436145 131436283 -28163500 + MIRm SINE MIR 1 138 -138 7 1587 1976 35 93 0 chr3 131437066 131437325 -28162458 - RLTR10B LTR ERVK 0 292 10 7 1587 900 303 28 22 chr3 131437350 131437705 -28162078 - ORR1E LTR MaLR -2 357 1 7 1587 830 273 36 50 chr3 131437963 131438325 -28161458 + RLTR15 LTR ERVK 3 359 0 7 1587 254 301 8 42 chr3 131438695 131438813 -28160970 + CT-rich Low_complexity Low_complexity 4 117 0 7 1587 282 288 473 60 chr3 131439157 131439362 -28160421 - B4A SINE B4 0 292 3 7 1587 300 171 161 110 chr3 131440568 131440686 -28159097 + B1F2 SINE Alu 1 124 -25 7 1587 216 0 0 0 chr3 131440687 131440711 -28159072 + (CA)n Simple_repeat Simple_repeat 2 25 0 7 1587 561 250 0 0 chr3 131441071 131441243 -28158540 + (TG)n Simple_repeat Simple_repeat 1 172 0 7 1587 1157 148 113 0 chr3 131441484 131441687 -28158096 + URR1A DNA MER1_type 1 226 0 7 1587 288 274 68 0 chr3 131441886 131441959 -28157824 - ID4_ SINE ID 0 83 6 7 1587 231 157 0 0 chr3 131443289 131443340 -28156443 + T-rich Low_complexity Low_complexity 1 51 0 7 1587 684 130 0 0 chr3 131443656 131443771 -28156012 + (TC)n Simple_repeat Simple_repeat 2 116 0 7 1587 785 342 47 70 chr3 131443808 131444107 -28155676 - B4 SINE B4 0 292 1 7 1587 328 0 42 21 chr3 131444123 131444171 -28155612 + (TTTTG)n Simple_repeat Simple_repeat 5 53 0 7 1587 551 302 37 67 chr3 131444330 131444442 -28155341 + MER33 DNA MER1_type 2 111 -213 7 1587 1259 34 0 0 chr3 131444442 131444588 -28155195 - B1_Mm SINE Alu 0 147 2 7 1587 551 302 37 67 chr3 131444588 131444802 -28154981 + MER33 DNA MER1_type 112 318 -6 7 1587 261 335 129 16 chr3 131445053 131445356 -28154427 - L2 LINE L2 -339 3080 2744 7 1587 630 264 112 19 chr3 131445361 131445566 -28154217 - MLT1C LTR MaLR -9 458 235 7 1587 205 352 98 79 chr3 131445781 131446086 -28153697 - L2 LINE L2 -687 2732 2422 7 1587 664 212 61 68 chr3 131446825 131447088 -28152695 - RLTR15 LTR ERVK -66 293 33 7 1587 351 340 75 32 chr3 131447945 131448076 -28151707 - L2 LINE L2 -398 3021 2881 7 1587 366 229 211 0 chr3 131448076 131448185 -28151598 + B1F2 SINE Alu 1 132 -17 7 1587 345 75 0 0 chr3 131448185 131448238 -28151545 + (CAAA)n Simple_repeat Simple_repeat 2 54 0 7 1587 351 340 75 32 chr3 131448238 131448385 -28151398 - L2 LINE L2 -539 2880 2731 7 1587 269 343 14 21 chr3 131448438 131448578 -28151205 - L2 LINE L2 -818 2601 2463 7 1587 754 306 73 26 chr3 131449659 131450041 -28149742 - Looper DNA PiggyBac -366 1192 793 7 1587 413 271 127 22 chr3 131450043 131450224 -28149559 - MIR SINE MIR -40 222 23 7 1587 2247 138 33 51 chr3 131450883 131450983 -28148800 + RMER10A LTR ERVL 1 99 -343 7 1587 3231 47 2 7 chr3 131450983 131451388 -28148395 - L1Md_F2 LINE L1 -2 6580 6178 7 1587 2247 138 33 51 chr3 131451388 131451737 -28148046 + RMER10A LTR ERVL 100 441 -1 7 1587 289 210 0 0 chr3 131451933 131451995 -28147788 - L1MA5 LINE L1 -17 6283 6222 7 1587 922 332 3 27 chr3 131453785 131454085 -28145698 - MTE2b LTR MaLR -52 327 35 7 1587 252 286 56 71 chr3 131454403 131454599 -28145184 - L1MEc LINE L1 -3642 3692 3500 7 1587 275 172 0 0 chr3 131454748 131454806 -28144977 - L1MEc LINE L1 -4037 3050 2993 7 1587 364 312 89 25 chr3 131455011 131455406 -28144377 - L1MEc LINE L1 -4259 2828 2413 7 1587 350 324 119 70 chr3 131455612 131456216 -28143567 - L1MEc LINE L1 -5070 2017 1384 7 1587 639 260 43 101 chr3 131456248 131456436 -28143347 - B3 SINE B2 -8 208 32 7 1587 1599 232 82 13 chr3 131456760 131457140 -28142643 + MTD LTR MaLR 1 406 -13 7 1587 391 281 27 61 chr3 131461102 131461250 -28138533 + B4A SINE B4 78 220 -72 7 1587 917 147 15 0 chr3 131461119 131461255 -28138528 + B1_Mus1 SINE Alu 11 148 0 7 1587 280 330 146 36 chr3 131462802 131463022 -28136761 - MLT1B LTR MaLR -179 310 67 7 1587 1174 253 10 37 chr3 131463464 131463760 -28136023 + B4 SINE B4 1 288 -4 7 1587 432 123 0 0 chr3 131463779 131463852 -28135931 + (CA)n Simple_repeat Simple_repeat 2 74 0 7 1587 327 132 0 19 chr3 131463879 131463933 -28135850 + HAL1-3A_ME LINE L1 1976 2028 -830 7 1587 608 210 0 6 chr3 131463955 131464123 -28135660 + (CA)n Simple_repeat Simple_repeat 2 168 0 7 1588 855 254 73 19 chr3 131465865 131466238 -28133545 + MER44B DNA MER2_type 32 459 -91 7 1588 367 301 101 71 chr3 131466926 131467094 -28132689 - MLT1B-int LTR MaLR -788 599 427 7 1588 362 363 79 32 chr3 131467113 131467392 -28132391 + MLT1J-int LTR MaLR 632 923 -464 7 1588 905 299 53 76 chr3 131467432 131467906 -28131877 - ERVL-int LTR ERVL -4779 978 516 7 1588 26 74 0 0 chr3 131467908 131467962 -28131821 + AT_rich Low_complexity Low_complexity 1 54 0 7 1588 492 246 135 32 chr3 131468029 131468263 -28131520 - MIRb SINE MIR -2 266 1 7 1588 238 348 59 25 chr3 131469132 131469250 -28130533 + LTR78 LTR ERV1 834 955 -349 7 1588 325 219 109 0 chr3 131469312 131469376 -28130407 + B4A SINE B4 218 288 -4 7 1588 276 30 0 0 chr3 131469422 131469455 -28130328 + (CA)n Simple_repeat Simple_repeat 2 34 0 7 1588 349 322 41 14 chr3 131469924 131470069 -28129714 - MLT1B LTR MaLR -79 311 163 7 1588 389 283 28 19 chr3 131470078 131470186 -28129597 + PB1D10 SINE Alu 1 109 -8 7 1588 303 255 9 113 chr3 131470273 131470388 -28129395 - MLT1B LTR MaLR -239 151 49 7 1588 693 238 37 31 chr3 131472408 131472599 -28127184 - MER121 Unknown Unknown -163 249 58 7 1588 275 47 0 65 chr3 131472608 131472654 -28127129 + (TTTTC)n Simple_repeat Simple_repeat 3 45 0 7 1588 394 262 0 8 chr3 131473645 131473772 -28126011 + Lx6 LINE L1 7309 7434 -26 7 1588 279 300 46 37 chr3 131473994 131474212 -28125571 - RMER17A2 LTR ERVK -492 414 195 7 1588 1048 277 17 14 chr3 131474781 131475070 -28124713 - B4A SINE B4 -2 290 1 7 1588 359 310 83 47 chr3 131475221 131475414 -28124369 - MLT1F1 LTR MaLR -1 568 369 7 1588 387 0 0 0 chr3 131475502 131475545 -28124238 + (GA)n Simple_repeat Simple_repeat 2 44 0 7 1588 241 282 28 0 chr3 131475550 131475621 -28124162 - MLT1F1 LTR MaLR -359 201 129 7 1588 376 297 96 51 chr3 131475785 131475941 -28123842 - RSINE1 SINE B4 0 165 3 7 1588 192 327 0 0 chr3 131476408 131476460 -28123323 - L2c LINE L2 -75 3312 3261 7 1588 5857 202 77 54 chr3 131476616 131476777 -28123006 - Lx7 LINE L1 -5 7691 7530 7 1588 252 0 0 0 chr3 131476777 131476805 -28122978 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 7 1588 5857 202 77 54 chr3 131476805 131478086 -28121697 - Lx7 LINE L1 -167 7529 6220 7 1588 1163 43 0 7 chr3 131478086 131478226 -28121557 - B1_Mus2 SINE Alu -7 140 2 7 1588 5857 202 77 54 chr3 131478226 131478386 -28121397 - Lx7 LINE L1 -1477 6219 6053 7 1588 186 236 109 0 chr3 131479265 131479320 -28120463 + MIRm SINE MIR 30 90 -186 7 1588 225 225 118 43 chr3 131479413 131479506 -28120277 - L1MC4a LINE L1 -977 6905 6806 7 1588 919 297 48 28 chr3 131479900 131480361 -28119422 - L1MC1 LINE L1 -479 5854 5385 7 1588 654 306 54 9 chr3 131480466 131480687 -28119096 - B4A SINE B4 -60 232 2 7 1588 417 303 31 25 chr3 131480693 131480852 -28118931 - L1MC1 LINE L1 -759 5387 5228 7 1588 560 368 50 34 chr3 131481076 131481374 -28118409 - MLT1A LTR MaLR -40 334 32 7 1588 788 287 94 47 chr3 131484418 131485058 -28114725 - L1M2 LINE L1 -1045 5098 4429 7 1588 332 343 0 0 chr3 131485473 131485610 -28114173 - L1_Mur3 LINE L1 -1538 4342 4206 7 1588 2173 196 60 95 chr3 131485766 131486398 -28113385 - RMER19C LTR ERVK -1 610 1 7 1588 371 266 123 15 chr3 131487012 131487142 -28112641 + MER3 DNA MER1_type 13 156 -53 7 1588 2943 202 113 10 chr3 131487142 131487968 -28111815 + Lx7 LINE L1 6402 7312 -384 7 1588 189 0 0 0 chr3 131488003 131488024 -28111759 + (CTG)n Simple_repeat Simple_repeat 2 22 0 7 1588 627 102 0 30 chr3 131488024 131488057 -28111726 + (TCC)n Simple_repeat Simple_repeat 2 33 0 7 1588 1164 111 0 0 chr3 131488057 131488237 -28111546 + (TTC)n Simple_repeat Simple_repeat 1 180 0 7 1588 627 102 0 30 chr3 131488237 131488304 -28111479 + (TCC)n Simple_repeat Simple_repeat 2 67 0 7 1588 1473 97 0 9 chr3 131488304 131488845 -28110938 + (TTC)n Simple_repeat Simple_repeat 1 536 0 7 1588 351 244 0 0 chr3 131488841 131488956 -28110827 + C-rich Low_complexity Low_complexity 2 116 0 7 1588 911 144 0 11 chr3 131488941 131489123 -28110660 + CT-rich Low_complexity Low_complexity 1 180 0 7 1588 1280 73 6 0 chr3 131489123 131489300 -28110483 + (TTC)n Simple_repeat Simple_repeat 3 180 0 7 1588 1124 104 0 11 chr3 131489311 131489486 -28110297 + (TTC)n Simple_repeat Simple_repeat 1 173 0 7 1588 1131 102 0 0 chr3 131489493 131489670 -28110113 + (TCC)n Simple_repeat Simple_repeat 3 179 0 7 1588 453 180 0 0 chr3 131489670 131489759 -28110024 + CT-rich Low_complexity Low_complexity 1 89 0 7 1588 1259 162 16 102 chr3 131489790 131490154 -28109629 + Lx7 LINE L1 7356 7688 -8 7 1588 24 32 0 0 chr3 131490170 131490201 -28109582 + AT_rich Low_complexity Low_complexity 1 31 0 7 1588 243 254 0 17 chr3 131490205 131490265 -28109518 + MER3 DNA MER1_type 151 209 0 7 1588 621 312 78 7 chr3 131491694 131491965 -28107818 + B4A SINE B4 1 290 -2 7 1588 1291 60 15 0 chr3 131491967 131492236 -28107547 + (TC)n Simple_repeat Simple_repeat 1 273 0 7 1588 306 0 0 0 chr3 131492236 131492269 -28107514 + (CA)n Simple_repeat Simple_repeat 1 34 0 7 1588 1541 78 32 9 chr3 131492512 131492732 -28107051 - L1Md_F2 LINE L1 -10 6572 6348 7 1588 1395 74 26 0 chr3 131493271 131493461 -28106322 + B2_Mm2 SINE B2 1 195 0 7 1588 4513 66 33 12 chr3 131494572 131495174 -28104609 + L1Md_F2 LINE L1 5968 6582 0 7 1588 315 288 76 49 chr3 131496446 131496669 -28103114 - MT2A LTR ERVL 0 533 305 7 1588 268 376 39 28 chr3 131496762 131496940 -28102843 - MLT2B5 LTR ERVL -383 334 155 8 1588 4374 78 3 10 chr3 131497785 131498378 -28101405 + L1_Mus3 LINE L1 6050 6638 0 8 1588 378 259 82 0 chr3 131499165 131499250 -28100533 - B3 SINE B2 -124 92 1 8 1588 2028 117 58 0 chr3 131499570 131499878 -28099905 - ORR1A3 LTR MaLR 0 326 1 8 1588 234 230 252 0 chr3 131500071 131500206 -28099577 - L1M5 LINE L1 -378 5801 5633 1 1588 24 0 0 0 chr3 131500257 131500281 -28099502 + AT_rich Low_complexity Low_complexity 1 24 0 2 1588 2537 200 53 25 chr3 131500287 131500893 -28098890 - RMER1C Other Other -4 1338 716 3 1588 197 140 60 0 chr3 131500958 131501008 -28098775 + (TATATG)n Simple_repeat Simple_repeat 1 53 0 4 1588 704 339 21 5 chr3 131501047 131501074 -28098709 - B3A SINE B2 -2 196 166 5 1588 639 39 0 0 chr3 131501074 131501152 -28098631 + (TG)n Simple_repeat Simple_repeat 1 78 0 6 1588 704 339 21 5 chr3 131501152 131501317 -28098466 - B3A SINE B2 -33 165 1 5 1588 638 220 75 45 chr3 131501414 131501614 -28098169 - MTD LTR MaLR -1 418 213 7 1588 499 359 110 47 chr3 131501690 131502050 -28097733 - L1MD LINE L1 -805 5341 4929 8 1588 570 13 38 0 chr3 131502050 131502129 -28097654 + (TCTA)n Simple_repeat Simple_repeat 3 84 0 9 1588 499 359 110 47 chr3 131502129 131502210 -28097573 - L1MD LINE L1 -1218 4928 4861 8 1588 850 234 73 24 chr3 131502210 131502416 -28097367 + B3 SINE B2 1 216 0 1 1588 499 359 110 47 chr3 131502416 131502634 -28097149 - L1MD LINE L1 -1286 4860 4640 8 1588 351 325 6 64 chr3 131507025 131507196 -28092587 + RSINE1 SINE B4 1 161 -4 1 1588 183 130 36 18 chr3 131507907 131507962 -28091821 + (TG)n Simple_repeat Simple_repeat 2 57 0 1 1588 390 178 32 32 chr3 131507974 131508131 -28091652 + (TATG)n Simple_repeat Simple_repeat 4 160 0 1 1588 871 246 86 43 chr3 131508158 131508582 -28091201 - RMER20B LTR ERVK -1 626 129 1 1588 829 126 17 11 chr3 131508738 131508915 -28090868 + (TG)n Simple_repeat Simple_repeat 1 178 0 1 1588 478 273 42 11 chr3 131509698 131509887 -28089896 + L1MC1 LINE L1 5796 5990 -343 1 1588 279 314 48 72 chr3 131510048 131510340 -28089443 + L1MC1 LINE L1 6048 6332 -12 1 1588 1136 83 0 0 chr3 131510675 131510820 -28088963 + B1_Mus2 SINE Alu 2 146 -1 1 1588 622 194 257 0 chr3 131512385 131512548 -28087235 + B3 SINE B2 2 206 -10 1 1588 678 58 0 0 chr3 131512662 131512749 -28087034 + (TTCTC)n Simple_repeat Simple_repeat 2 88 0 1 1588 195 42 0 0 chr3 131512750 131512774 -28087009 + (TCCCC)n Simple_repeat Simple_repeat 5 28 0 2 1588 701 169 0 7 chr3 131512776 131512913 -28086870 + CT-rich Low_complexity Low_complexity 4 139 0 2 1588 370 328 18 9 chr3 131512953 131513067 -28086716 - ID_B1 SINE B4 -2 222 108 2 1588 225 224 0 15 chr3 131513305 131513373 -28086410 + Lx6 LINE L1 7368 7434 -26 2 1588 261 180 0 0 chr3 131513494 131513544 -28086239 + (TA)n Simple_repeat Simple_repeat 2 51 0 2 1588 242 266 25 25 chr3 131513897 131513978 -28085805 - ID4_ SINE ID -1 82 2 2 1588 232 315 80 32 chr3 131513989 131514238 -28085545 - HAL1b LINE L1 -672 1337 1077 2 1588 242 357 61 18 chr3 131515367 131515481 -28084302 + MLT1H LTR MaLR 1 119 -430 2 1588 1470 71 52 5 chr3 131515754 131515966 -28083817 - L1_Mus1 LINE L1 0 6567 6346 2 1588 488 277 89 89 chr3 131515989 131516179 -28083604 + B3A SINE B2 9 198 0 2 1588 229 356 150 53 chr3 131516176 131516422 -28083361 + ORR1E LTR MaLR 90 359 0 3 1588 550 313 25 87 chr3 131518397 131518593 -28081190 - B4A SINE B4 -106 186 3 3 1588 245 307 0 26 chr3 131518948 131519025 -28080758 - RMER15 LTR ERVL -98 477 403 3 1588 2843 189 36 16 chr3 131519042 131519914 -28079869 - Lx2B LINE L1 -47 6607 5698 3 1588 759 267 66 27 chr3 131519900 131520158 -28079625 - Lx8 LINE L1 -793 6680 6413 3 1588 2138 244 69 20 chr3 131520264 131520737 -28079046 + RLTR20A2 LTR ERVK 3 488 -90 3 1588 270 0 0 0 chr3 131520737 131520767 -28079016 + (TG)n Simple_repeat Simple_repeat 2 31 0 3 1588 2138 244 69 20 chr3 131520767 131520842 -28078941 + RLTR20A2 LTR ERVK 489 577 -1 3 1588 282 349 54 54 chr3 131521019 131521243 -28078540 + MIR SINE MIR 12 235 -27 3 1588 402 139 0 0 chr3 131522603 131522675 -28077108 + (TG)n Simple_repeat Simple_repeat 1 72 0 3 1588 409 280 92 99 chr3 131522675 131522968 -28076815 - B4A SINE B4 0 292 2 3 1588 1577 251 46 43 chr3 131524968 131525384 -28074399 + MTD LTR MaLR 2 418 -1 4 1588 2759 109 24 2 chr3 131525868 131526290 -28073493 - L1_Mus3 LINE L1 0 6638 6208 4 1588 646 226 196 0 chr3 131526297 131526501 -28073282 + Lx8 LINE L1 7169 7412 -61 4 1588 681 91 0 47 chr3 131526503 131526630 -28073153 + (GGGA)n Simple_repeat Simple_repeat 3 123 0 4 1588 233 296 16 73 chr3 131526630 131526754 -28073029 + Lx8 LINE L1 7346 7462 -11 4 1588 2357 145 128 130 chr3 131526857 131527427 -28072356 - RMER4B LTR ERVK 0 585 17 4 1588 315 237 0 0 chr3 131527706 131527765 -28072018 + ID4 SINE ID 14 72 -11 4 1588 342 0 0 0 chr3 131528113 131528151 -28071632 + (CA)n Simple_repeat Simple_repeat 2 39 0 4 1588 562 257 22 0 chr3 131528173 131528309 -28071474 + MTD LTR MaLR 1 139 -280 4 1588 567 234 99 0 chr3 131528308 131528449 -28071334 + MTD LTR MaLR 265 419 0 4 1588 1635 325 13 42 chr3 131528455 131529217 -28070566 - Lx9 LINE L1 -174 7470 6731 4 1588 452 229 132 33 chr3 131529222 131529389 -28070394 - ORR1D1 LTR MaLR 0 419 246 5 1588 33 25 0 0 chr3 131529721 131529761 -28070022 + AT_rich Low_complexity Low_complexity 1 40 0 5 1588 1211 81 6 0 chr3 131530110 131530283 -28069500 + (TTTC)n Simple_repeat Simple_repeat 1 174 0 5 1588 228 128 0 49 chr3 131532759 131532800 -28066983 - MER20 DNA MER1_type -148 71 33 5 1588 523 295 0 39 chr3 131532873 131533028 -28066755 + MTE2b LTR MaLR 28 176 -203 5 1588 201 250 0 0 chr3 131533656 131533700 -28066083 + (CA)n Simple_repeat Simple_repeat 1 44 0 5 1588 274 282 56 14 chr3 131533703 131533847 -28065936 - Lx9 LINE L1 -144 7500 7351 5 1588 1781 256 48 42 chr3 131533929 131534532 -28065251 - Lx9 LINE L1 -450 7194 6588 5 1588 3184 262 58 29 chr3 131534627 131535968 -28063815 - Lx9 LINE L1 -1597 6047 4617 5 1588 507 222 34 0 chr3 131535990 131536107 -28063676 - Lx9 LINE L1 -6488 1120 1000 5 1588 3776 12 0 0 chr3 131537939 131538364 -28061419 + L1Md_A LINE L1 6158 6582 0 5 1588 33657 57 2 2 chr3 131538375 131543566 -28056217 + L1Md_F3 LINE L1 228 5586 -297 5 1588 7997 45 1 2 chr3 131543567 131544551 -28055232 + L1Md_F3 LINE L1 5588 6570 -14 5 1588 689 251 54 57 chr3 131544554 131544908 -28054875 - Lx7 LINE L1 -26 7670 7318 5 1588 685 199 48 12 chr3 131544933 131545101 -28054682 - Lx7 LINE L1 -333 7363 7190 6 1588 4478 221 24 8 chr3 131545092 131546070 -28053713 + Lx7 LINE L1 6192 7184 -512 6 1588 559 341 65 80 chr3 131546397 131546735 -28053048 + ORR1E LTR MaLR 8 340 -19 6 1588 405 306 80 25 chr3 131547592 131547793 -28051990 - RMER15 LTR ERVL -12 563 352 6 1588 923 176 55 32 chr3 131547859 131548076 -28051707 + URR1A DNA MER1_type 5 226 0 6 1588 193 0 94 0 chr3 131548454 131548486 -28051297 + (TTTTTA)n Simple_repeat Simple_repeat 1 35 0 6 1588 357 283 47 0 chr3 131548486 131548592 -28051191 - PB1D10 SINE Alu -6 111 1 6 1588 378 74 0 0 chr3 131548980 131549034 -28050749 + (TTG)n Simple_repeat Simple_repeat 3 56 0 6 1588 564 294 28 155 chr3 131549262 131549417 -28050366 + B3A SINE B2 28 177 -21 6 1588 270 116 0 0 chr3 131549417 131549460 -28050323 + (CA)n Simple_repeat Simple_repeat 1 43 0 6 1588 246 294 28 155 chr3 131549460 131549485 -28050298 + B2_Mm2 SINE B2 162 185 -10 6 1588 561 314 11 44 chr3 131549496 131549676 -28050107 + B3A SINE B2 1 174 -24 6 1588 267 263 0 0 chr3 131549672 131549729 -28050054 + PB1D10 SINE Alu 16 72 -45 7 1588 668 207 28 61 chr3 131550330 131550510 -28049273 - MER106A DNA MER1_type -5 231 58 7 1588 216 342 16 16 chr3 131550662 131550784 -28048999 + MIRb SINE MIR 94 215 -53 7 1588 266 212 20 20 chr3 131551077 131551178 -28048605 + CT-rich Low_complexity Low_complexity 2 102 0 7 1588 2366 102 27 24 chr3 131551444 131551816 -28047967 - L1Md_F2 LINE L1 -2 6580 6208 7 1588 1709 265 79 14 chr3 131551920 131552491 -28047292 - Lx8 LINE L1 -59 7414 6807 7 1588 478 311 119 18 chr3 131552512 131552797 -28046986 + Lx8 LINE L1 6503 6816 -657 7 1588 405 250 40 40 chr3 131553220 131553320 -28046463 + ORR1E LTR MaLR 8 107 -252 7 1588 465 19 0 0 chr3 131553322 131553376 -28046407 + (GGAGAA)n Simple_repeat Simple_repeat 3 56 0 7 1588 1490 17 6 0 chr3 131553376 131553553 -28046230 + (GAA)n Simple_repeat Simple_repeat 3 180 0 7 1588 377 291 3 64 chr3 131553642 131553796 -28045987 + ORR1E LTR MaLR 158 327 -52 7 1588 264 30 0 0 chr3 131554306 131554339 -28045444 + (TTTTA)n Simple_repeat Simple_repeat 2 34 0 8 1588 543 259 7 29 chr3 131554346 131554485 -28045298 - B1F SINE Alu -13 136 1 8 1588 205 256 0 0 chr3 131554506 131554549 -28045234 + (TG)n Simple_repeat Simple_repeat 2 44 0 8 1588 460 281 32 64 chr3 131554552 131554772 -28045011 + L1_Rod LINE L1 3343 3555 -2292 8 1588 227 320 90 52 chr3 131555073 131555228 -28044555 + L2c LINE L2 3165 3325 -62 8 1588 243 232 0 0 chr3 131557203 131557259 -28042524 + (TG)n Simple_repeat Simple_repeat 1 56 0 8 1588 845 296 46 43 chr3 131557287 131557569 -28042214 - B4A SINE B4 -8 284 2 8 1588 1086 287 191 26 chr3 131557785 131558283 -28041500 - MLT2F LTR ERVL -81 582 3 8 1588 432 311 45 11 chr3 131558706 131558885 -28040898 - ERVL-E-int LTR ERVL -3717 1950 1766 8 1588 843 273 49 7 chr3 131558906 131559190 -28040593 - L1M2 LINE L1 -1828 4312 4017 8 1588 477 0 0 0 chr3 131559199 131559252 -28040531 + (TG)n Simple_repeat Simple_repeat 1 53 0 9 1588 810 129 0 0 chr3 131559252 131559509 -28040274 + (GA)n Simple_repeat Simple_repeat 1 257 0 9 1588 855 274 121 18 chr3 131559510 131559626 -28040157 - L1M2 LINE L1 -2143 4000 3843 8 1588 405 0 0 0 chr3 131559626 131559671 -28040112 + (TA)n Simple_repeat Simple_repeat 1 45 0 9 1588 855 274 121 18 chr3 131559671 131559952 -28039831 - L1M2 LINE L1 -2301 3842 3563 8 1588 267 145 46 46 chr3 131560032 131560097 -28039686 - RLTR42 LTR ERVK -28 211 147 9 1588 538 219 16 47 chr3 131560180 131560309 -28039474 - RLTR42 LTR ERVK -113 126 2 9 1588 486 0 0 0 chr3 131560630 131560684 -28039099 + (TTA)n Simple_repeat Simple_repeat 1 54 0 9 1588 243 197 73 57 chr3 131560689 131560788 -28038995 + L1MEf LINE L1 2293 2396 -4004 9 1588 208 305 0 0 chr3 131560835 131560894 -28038889 + GA-rich Low_complexity Low_complexity 4 62 0 9 1588 24 0 0 0 chr3 131562641 131562665 -28037118 + AT_rich Low_complexity Low_complexity 1 24 0 9 1588 240 281 0 0 chr3 131563183 131563240 -28036543 + (ATG)n Simple_repeat Simple_repeat 3 59 0 9 1588 636 167 88 0 chr3 131563343 131563457 -28036326 - B1_Mur2 SINE Alu -4 145 22 9 1588 207 294 19 10 chr3 131563569 131563672 -28036111 + (TA)n Simple_repeat Simple_repeat 2 105 0 1 1588 342 67 0 0 chr3 131564896 131564941 -28034842 + (T)n Simple_repeat Simple_repeat 1 45 0 1 1588 4125 49 19 0 chr3 131565498 131565964 -28033819 - MT2C_Mm LTR ERVL 0 475 1 1 1588 33 25 0 0 chr3 131566850 131566890 -28032893 + AT_rich Low_complexity Low_complexity 1 40 0 1 1588 4564 17 0 0 chr3 131566991 131567473 -28032310 - LTRIS_Mm LTR ERV1 0 482 1 1 1588 256 218 44 0 chr3 131567991 131568053 -28031730 + B1F SINE Alu 1 66 -51 1 1588 366 23 0 0 chr3 131569341 131569384 -28030399 + (CA)n Simple_repeat Simple_repeat 1 43 0 1 1588 28 0 0 0 chr3 131569384 131569412 -28030371 + AT_rich Low_complexity Low_complexity 1 28 0 1 1588 216 0 0 0 chr3 131569965 131569989 -28029794 + (CAAAA)n Simple_repeat Simple_repeat 4 27 0 1 1588 214 298 148 0 chr3 131570317 131570419 -28029364 + L2a LINE L2 3253 3382 -44 1 1588 2210 97 6 59 chr3 131570568 131570908 -28028875 - ORR1A2 LTR MaLR 0 327 6 1 1588 254 351 67 86 chr3 131571024 131571233 -28028550 + L2 LINE L2 1508 1712 -1707 1 1588 242 417 0 8 chr3 131571235 131571368 -28028415 + L2 LINE L2 2142 2273 -1146 1 1588 348 24 0 0 chr3 131572024 131572065 -28027718 + (CGTG)n Simple_repeat Simple_repeat 1 41 0 1 1588 30 0 0 0 chr3 131572928 131572958 -28026825 + AT_rich Low_complexity Low_complexity 1 30 0 1 1588 468 274 20 0 chr3 131573025 131573127 -28026656 + RSINE1 SINE B4 62 165 0 1 1588 201 39 0 0 chr3 131573130 131573156 -28026627 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 1 1588 287 275 50 0 chr3 131575312 131575392 -28024391 - B1F SINE Alu -59 90 7 1 1588 582 229 33 53 chr3 131575842 131575994 -28023789 + RSINE1 SINE B4 4 152 -13 1 1588 1148 89 14 0 chr3 131576926 131577072 -28022711 + B1_Mus1 SINE Alu 1 148 0 1 1588 248 235 0 0 chr3 131577101 131577152 -28022631 - MIR SINE MIR -163 99 49 1 1588 297 0 0 0 chr3 131577789 131577822 -28021961 + (TA)n Simple_repeat Simple_repeat 2 34 0 1 1588 531 294 20 7 chr3 131578625 131578772 -28021011 - B1F1 SINE Alu 0 149 1 1 1588 3045 79 20 10 chr3 131579254 131579650 -28020133 + MTB LTR MaLR 1 400 0 1 1588 426 244 7 102 chr3 131580317 131580454 -28019329 + B1F SINE Alu 1 124 -25 1 1588 425 208 82 10 chr3 131581219 131581316 -28018467 + U6 snRNA snRNA 2 105 -2 1 1588 2212 180 82 8 chr3 131581321 131581713 -28018070 + Lx6 LINE L1 7035 7455 -5 1 1588 26 0 0 0 chr3 131581717 131581743 -28018040 + AT_rich Low_complexity Low_complexity 1 26 0 1 1588 701 336 4 11 chr3 131581845 131582110 -28017673 - Lx9 LINE L1 -315 7329 7067 1 1588 324 0 0 0 chr3 131583573 131583609 -28016174 + (TC)n Simple_repeat Simple_repeat 1 36 0 1 1588 396 0 0 0 chr3 131583609 131583652 -28016131 + (CA)n Simple_repeat Simple_repeat 1 44 0 1 1588 530 195 44 111 chr3 131583751 131583778 -28016005 + B4 SINE B4 70 172 -120 1 1588 1150 35 0 0 chr3 131583778 131583920 -28015863 + B1_Mus1 SINE Alu 7 148 0 1 1588 530 195 44 111 chr3 131583920 131583937 -28015846 + B4 SINE B4 173 246 -46 1 1588 852 218 96 5 chr3 131584200 131584398 -28015385 + B3 SINE B2 1 216 0 1 1588 959 58 0 0 chr3 131584407 131584528 -28015255 - B1_Mm SINE Alu -15 132 12 1 1588 5580 67 1 3 chr3 131584528 131585202 -28014581 + L1_Mus1 LINE L1 5893 6565 -2 1 1588 311 245 54 54 chr3 131585846 131585958 -28013825 - Lx8 LINE L1 -341 7132 7021 1 1588 569 291 184 25 chr3 131585982 131586501 -28013282 - Lx8 LINE L1 -523 6950 6350 1 1588 558 279 63 42 chr3 131586882 131587073 -28012710 + B3A SINE B2 3 197 -1 1 1588 832 209 4 79 chr3 131587074 131587302 -28012481 + Lx5 LINE L1 6839 7049 -1 1 1588 279 342 34 51 chr3 131587551 131587668 -28012115 + MTC LTR MaLR 256 370 -51 1 1588 378 275 74 8 chr3 131587729 131587850 -28011933 + RMER15 LTR ERVL 1 129 -446 1 1588 396 304 11 0 chr3 131587886 131587978 -28011805 + RMER15 LTR ERVL 276 368 -207 1 1588 342 115 0 0 chr3 131587983 131588035 -28011748 + (TCCCC)n Simple_repeat Simple_repeat 2 53 0 1 1588 609 281 50 30 chr3 131588057 131588259 -28011524 + RMER15 LTR ERVL 370 575 0 1 1588 707 226 34 0 chr3 131588398 131588544 -28011239 - ID_B1 SINE B4 0 224 74 1 1588 909 138 29 139 chr3 131588622 131589207 -28010576 - RMER17C LTR ERVK -9 401 3 1 1588 480 35 0 0 chr3 131589681 131589739 -28010044 + (GA)n Simple_repeat Simple_repeat 1 58 0 1 1588 404 37 19 0 chr3 131591450 131591504 -28008279 + (CCAA)n Simple_repeat Simple_repeat 2 56 0 1 1588 4774 10 0 0 chr3 131591517 131592010 -28007773 - MT2_Mm LTR ERVL 0 493 1 1 1588 322 0 0 0 chr3 131592010 131592048 -28007735 - MERVL-int LTR ERVL 0 5485 5448 1 1588 368 179 46 35 chr3 131592048 131592135 -28007648 - ORR1A3-int LTR MaLR -1323 640 553 1 198 48404 14 6 0 chr3 131592135 131597461 -28002322 - MERVL-int LTR ERVL -125 5360 1 1 1589 4774 10 0 0 chr3 131597461 131597954 -28001829 - MT2_Mm LTR ERVL 0 493 1 1 1589 198 222 0 0 chr3 131598604 131598658 -28001125 + C-rich Low_complexity Low_complexity 5 58 0 1 1589 1145 111 0 11 chr3 131598658 131598840 -28000943 + (TCC)n Simple_repeat Simple_repeat 1 180 0 1 1589 1426 28 0 11 chr3 131598849 131599030 -28000753 + (TTC)n Simple_repeat Simple_repeat 1 179 0 1 1589 897 148 11 6 chr3 131599031 131599207 -28000576 + CT-rich Low_complexity Low_complexity 3 179 0 1 1589 24 53 0 0 chr3 131604568 131604606 -27995177 + AT_rich Low_complexity Low_complexity 1 38 0 1 1589 528 297 58 0 chr3 131604613 131604768 -27995015 + ID_B1 SINE B4 24 187 -37 1 1589 278 283 68 107 chr3 131604687 131604790 -27994993 + PB1D10 SINE Alu 19 117 0 1 1589 204 67 0 0 chr3 131604794 131604824 -27994959 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 1 1589 31904 25 0 0 chr3 131608211 131614816 -27984967 - L1Md_T LINE L1 0 6585 1 1 1589 309 145 0 0 chr3 131615051 131615113 -27984670 + (CA)n Simple_repeat Simple_repeat 2 63 0 1 1589 226 205 0 0 chr3 131615183 131615222 -27984561 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 1589 180 0 0 0 chr3 131615441 131615461 -27984322 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1 1589 348 88 0 0 chr3 131616076 131616133 -27983650 + (GTTTG)n Simple_repeat Simple_repeat 3 59 0 1 1589 808 263 226 9 chr3 131616371 131616590 -27983193 - Lx8 LINE L1 -674 6799 6501 1 1589 3314 150 10 35 chr3 131616590 131617186 -27982597 + Lx2B LINE L1 6414 6994 -6 1 1589 808 263 226 9 chr3 131617186 131617408 -27982375 - Lx8 LINE L1 -973 6500 6263 1 1589 295 338 57 29 chr3 131617496 131617636 -27982147 + B3A SINE B2 1 144 -54 1 1589 268 260 52 52 chr3 131617631 131617708 -27982075 + B3A SINE B2 105 181 -17 1 1589 1164 62 14 0 chr3 131618313 131618458 -27981325 - B1_Mm SINE Alu 0 147 1 1 1589 260 0 57 0 chr3 131619372 131619407 -27980376 + (CAAAAA)n Simple_repeat Simple_repeat 3 39 0 1 1589 189 74 0 0 chr3 131619404 131619431 -27980352 + (CCAA)n Simple_repeat Simple_repeat 1 27 0 1 1589 254 356 21 29 chr3 131619745 131619985 -27979798 - Lx9 LINE L1 -179 7465 7228 1 1589 521 325 38 0 chr3 131620240 131620477 -27979306 + Lx9 LINE L1 6304 6549 -1095 1 1589 1810 290 18 47 chr3 131621517 131622179 -27977604 - Lx8 LINE L1 -8 7465 6823 1 1589 2036 135 9 12 chr3 131622305 131622635 -27977148 - ORR1A4 LTR MaLR 0 329 1 1 1589 6300 139 38 88 chr3 131622635 131623948 -27975835 - ORR1A4-int LTR MaLR 0 1963 717 1 1589 445 161 0 230 chr3 131623904 131624017 -27975766 - MT2B LTR ERVL -309 292 206 1 1589 288 51 0 0 chr3 131624013 131624052 -27975731 - ORR1A4-int LTR MaLR -1470 39 1 1 1589 1798 158 32 0 chr3 131624056 131624367 -27975416 - ORR1A4 LTR MaLR -8 321 1 1 1589 1677 277 44 41 chr3 131624394 131625003 -27974780 - Lx8 LINE L1 -667 6806 6196 1 1589 378 0 0 0 chr3 131625309 131625351 -27974432 + (CA)n Simple_repeat Simple_repeat 2 43 0 1 1589 247 61 61 0 chr3 131625352 131625401 -27974382 + (CAAAAA)n Simple_repeat Simple_repeat 4 55 0 1 1589 194 267 0 22 chr3 131625838 131625884 -27973899 + L2c LINE L2 3274 3318 -69 1 1589 1345 226 137 30 chr3 131626821 131627186 -27972597 + MTD LTR MaLR 3 406 -13 1 1589 274 98 19 19 chr3 131627188 131627240 -27972543 + (CAA)n Simple_repeat Simple_repeat 1 52 0 1 1589 1204 61 0 0 chr3 131631656 131631803 -27967980 + B1_Mus1 SINE Alu 2 148 0 1 1589 237 33 0 0 chr3 131631803 131631833 -27967950 + (CAAAAA)n Simple_repeat Simple_repeat 6 35 0 1 1589 283 195 8 50 chr3 131631886 131632005 -27967778 + (TTTA)n Simple_repeat Simple_repeat 3 116 0 1 1589 435 83 0 0 chr3 131632803 131632863 -27966920 + (TTTA)n Simple_repeat Simple_repeat 2 61 0 1 1589 1455 319 30 28 chr3 131632872 131633600 -27966183 - Lx8 LINE L1 -152 7321 6592 1 1589 532 343 121 26 chr3 131633697 131634163 -27965620 + MLT1H LTR MaLR 6 540 -9 1 1589 182 410 60 0 chr3 131634221 131634304 -27965479 - MIRm SINE MIR -22 254 167 1 1589 1003 285 0 84 chr3 131635125 131635470 -27964313 - ORR1E-int LTR MaLR -735 635 321 1 1589 383 0 21 0 chr3 131635470 131635517 -27964266 + (TTTTA)n Simple_repeat Simple_repeat 2 49 0 1 1589 916 91 0 0 chr3 131635519 131635640 -27964143 - B1_Mm SINE Alu -6 141 21 1 1589 858 296 40 53 chr3 131635643 131635943 -27963840 - ORR1E-int LTR MaLR -1073 297 2 1 1589 857 287 83 39 chr3 131635937 131636274 -27963509 - ORR1E LTR MaLR -3 356 5 1 1589 504 0 0 0 chr3 131636373 131636429 -27963354 + (TA)n Simple_repeat Simple_repeat 2 57 0 1 1589 272 233 0 0 chr3 131637039 131637099 -27962684 + MIRc SINE MIR 66 125 -143 1 1589 770 268 96 5 chr3 131637633 131637832 -27961951 + B4 SINE B4 68 284 -8 1 1589 387 0 0 0 chr3 131638819 131638862 -27960921 + (CA)n Simple_repeat Simple_repeat 1 43 0 1 1589 211 341 104 17 chr3 131640378 131640551 -27959232 + L3 LINE CR1 3977 4164 -325 1 1589 252 0 0 0 chr3 131641535 131641563 -27958220 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 1 1589 319 339 141 46 chr3 131642882 131643237 -27956546 - MLT1H-int LTR MaLR 0 1489 1037 1 1589 266 318 119 9 chr3 131643555 131643774 -27956009 - Lx8 LINE L1 -5 7468 7226 1 1589 1399 192 84 21 chr3 131643981 131644022 -27955761 - ORR1B2 LTR MaLR -2 365 308 1 1589 2619 149 50 0 chr3 131644022 131644459 -27955324 - Lx LINE L1 0 6654 6196 1 1589 1399 192 84 21 chr3 131644459 131644704 -27955079 - ORR1B2 LTR MaLR -60 307 61 1 1589 651 174 53 0 chr3 131644760 131644892 -27954891 + Lx5 LINE L1 6258 6396 -654 1 1589 1319 298 9 27 chr3 131644963 131645401 -27954382 - Lx8 LINE L1 -595 6878 6449 1 1589 255 150 0 0 chr3 131645409 131645449 -27954334 - Lx8 LINE L1 -985 6488 6449 1 1589 2113 110 81 79 chr3 131645490 131645935 -27953848 - RLTR44E LTR ERVK -5 447 2 1 1589 768 286 93 15 chr3 131645952 131646286 -27953497 - Lx8 LINE L1 -985 6488 6129 1 1589 37 52 0 0 chr3 131646295 131646353 -27953430 + AT_rich Low_complexity Low_complexity 1 58 0 2 1589 986 295 55 25 chr3 131646358 131646869 -27952914 - Lx7 LINE L1 -1563 6133 5608 2 1589 207 85 64 0 chr3 131647067 131647114 -27952669 + (TCCC)n Simple_repeat Simple_repeat 4 53 0 2 1589 417 340 53 33 chr3 131648000 131648152 -27951631 + RSINE1 SINE B4 11 165 0 2 1589 471 130 0 0 chr3 131648159 131648236 -27951547 + (CA)n Simple_repeat Simple_repeat 2 78 0 2 1589 504 0 0 0 chr3 131648776 131648832 -27950951 + (TCCC)n Simple_repeat Simple_repeat 3 58 0 2 1589 1808 170 33 69 chr3 131649720 131650112 -27949671 - ORR1C1 LTR MaLR 0 378 1 2 1589 207 0 0 0 chr3 131650971 131650994 -27948789 + (CA)n Simple_repeat Simple_repeat 1 23 0 2 1589 298 280 120 1 chr3 131651798 131651909 -27947874 - MTD LTR MaLR -8 411 248 2 1589 1347 128 20 0 chr3 131654358 131654562 -27945221 + URR1B DNA MER1_type 18 225 0 2 1589 313 294 58 71 chr3 131655319 131655473 -27944310 - L1MCa LINE L1 -3723 2598 2447 2 1589 333 172 0 0 chr3 131655473 131655537 -27944246 + CT-rich Low_complexity Low_complexity 4 67 0 2 1589 634 269 83 59 chr3 131656005 131656463 -27943320 - L1MCa LINE L1 -4627 1881 1413 2 1589 327 373 19 19 chr3 131657218 131657379 -27942404 - RSINE1 SINE B4 0 165 5 2 1589 647 256 72 39 chr3 131657425 131657525 -27942258 + B3 SINE B2 3 109 -107 2 1589 1273 171 9 5 chr3 131657525 131657748 -27942035 + URR1A DNA MER1_type 2 225 -1 2 1589 647 256 72 39 chr3 131657748 131657854 -27941929 + B3 SINE B2 110 216 0 2 1589 21 0 0 0 chr3 131657854 131657875 -27941908 + AT_rich Low_complexity Low_complexity 1 21 0 2 1589 558 273 174 38 chr3 131658649 131659121 -27940662 + Zaphod2 DNA Tip100 2963 3498 -26 2 1589 650 337 30 15 chr3 131659130 131659329 -27940454 + ID_B1 SINE B4 22 223 -1 2 1589 1088 81 0 0 chr3 131659446 131659582 -27940201 - B1_Mm SINE Alu -10 137 2 2 1589 406 310 139 87 chr3 131663042 131663423 -27936360 + LTR50 LTR ERVL 16 416 -379 2 1589 502 280 43 70 chr3 131663478 131663708 -27936075 - RMER15 LTR ERVL -16 559 336 2 1589 575 230 0 69 chr3 131664166 131664325 -27935458 + MMAR1 DNA Mariner 1 148 -1138 2 1589 183 129 0 0 chr3 131664762 131664793 -27934990 + (CAGAGA)n Simple_repeat Simple_repeat 6 36 0 2 1589 262 156 0 30 chr3 131664969 131665035 -27934748 + (TA)n Simple_repeat Simple_repeat 2 65 0 2 1589 22 0 0 0 chr3 131665092 131665114 -27934669 + AT_rich Low_complexity Low_complexity 1 22 0 2 1589 226 319 0 14 chr3 131665246 131665319 -27934464 + T-rich Low_complexity Low_complexity 5 76 0 2 1589 243 0 0 0 chr3 131665327 131665354 -27934429 + (TTCC)n Simple_repeat Simple_repeat 2 28 0 2 1589 405 0 0 0 chr3 131666457 131666502 -27933281 + (TG)n Simple_repeat Simple_repeat 1 45 0 2 1589 243 0 0 0 chr3 131666502 131666528 -27933255 + (GA)n Simple_repeat Simple_repeat 1 27 0 2 1589 297 296 66 36 chr3 131666624 131666761 -27933022 + AmnSINE1 SINE SINE 370 510 -65 2 1589 780 93 0 8 chr3 131667811 131667970 -27931813 - L1_Mus1 LINE L1 0 6567 6444 2 1589 213 222 0 0 chr3 131668836 131668899 -27930884 + (CA)n Simple_repeat Simple_repeat 2 64 0 2 1589 312 247 0 0 chr3 131668898 131668983 -27930800 + (TA)n Simple_repeat Simple_repeat 1 85 0 2 1589 1248 366 98 28 chr3 131670039 131670995 -27928788 - L4 LINE RTE -341 1688 666 2 1589 34 65 0 0 chr3 131671325 131671387 -27928396 + AT_rich Low_complexity Low_complexity 1 62 0 2 1589 9204 119 12 8 chr3 131671751 131673195 -27926588 + Lx4A LINE L1 5606 7055 -3 2 1589 216 0 0 0 chr3 131673717 131673741 -27926042 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2 1589 2811 59 3 0 chr3 131673799 131674155 -27925628 - L1Md_F2 LINE L1 -11 6571 6215 2 1589 1211 260 65 103 chr3 131674698 131675007 -27924776 + Lx7 LINE L1 6940 7247 -449 2 1589 2514 23 40 0 chr3 131675007 131675311 -27924472 - L1Md_F3 LINE L1 -14 6570 6255 2 1589 1211 260 65 103 chr3 131675311 131675787 -27923996 + Lx7 LINE L1 7248 7695 -1 2 1589 214 308 14 122 chr3 131676504 131676578 -27923205 - B3 SINE B2 -51 165 100 2 1589 252 342 38 0 chr3 131676919 131676998 -27922785 - ID4 SINE ID 0 83 2 2 1589 29 28 0 0 chr3 131678891 131678927 -27920856 + AT_rich Low_complexity Low_complexity 1 36 0 2 1589 849 110 0 0 chr3 131679691 131679818 -27919965 + (TTTC)n Simple_repeat Simple_repeat 2 128 0 2 1589 258 312 75 67 chr3 131681090 131681108 -27918675 - MT2B LTR ERVL -354 247 220 2 1589 300 231 0 0 chr3 131681108 131681160 -27918623 - PB1D9 SINE Alu -52 68 17 2 1589 258 312 75 67 chr3 131681160 131681224 -27918559 - MT2B LTR ERVL -354 219 113 2 1589 595 306 26 19 chr3 131681224 131681534 -27918249 - L1M3 LINE L1 -1584 4556 4245 2 1589 259 110 105 40 chr3 131682712 131682788 -27916995 - Lx8 LINE L1 -31 7442 7362 2 1589 565 272 28 108 chr3 131682874 131683088 -27916695 - B3A SINE B2 0 198 2 2 1589 22 0 0 0 chr3 131684197 131684219 -27915564 + AT_rich Low_complexity Low_complexity 1 22 0 2 1589 429 261 134 52 chr3 131684460 131684654 -27915129 + B3 SINE B2 1 210 -6 2 1589 465 341 38 24 chr3 131686637 131686850 -27912933 + MIRb SINE MIR 9 224 -44 2 1589 441 310 42 26 chr3 131688180 131688236 -27911547 - MT2A LTR ERVL -338 195 1 2 1589 477 294 29 0 chr3 131688236 131688372 -27911411 - MTEa LTR MaLR -239 140 1 2 1589 258 349 18 35 chr3 131688519 131688632 -27911151 - L2c LINE L2 -228 3159 3049 2 1589 208 135 0 0 chr3 131688707 131688744 -27911039 + (A)n Simple_repeat Simple_repeat 1 37 0 2 1589 3050 165 68 59 chr3 131689160 131689919 -27909864 - RMER17B LTR ERVK -16 793 1 2 1589 256 245 128 39 chr3 131690815 131690826 -27908957 + CYRA11_Mm Unknown Y-chromosome 161 180 -437 2 1589 821 210 159 0 chr3 131690826 131691021 -27908762 - URR1A DNA MER1_type 0 226 1 2 1589 2013 164 8 53 chr3 131691103 131691477 -27908306 - ORR1B2 LTR MaLR -10 357 1 2 1589 317 60 0 57 chr3 131692488 131692541 -27907242 + (T)n Simple_repeat Simple_repeat 1 50 0 2 1589 1235 41 0 0 chr3 131692541 131692687 -27907096 - B1_Mm SINE Alu 0 147 2 2 1589 642 26 0 0 chr3 131693868 131693944 -27905839 + (TG)n Simple_repeat Simple_repeat 2 77 0 2 1589 523 283 14 48 chr3 131693947 131694092 -27905691 - RSINE1 SINE B4 -24 141 2 2 1589 475 339 38 31 chr3 131694162 131694451 -27905332 - L1M5 LINE L1 -351 5773 5483 2 1589 735 264 64 148 chr3 131694673 131694984 -27904799 - B4A SINE B4 0 292 8 2 1589 308 188 101 30 chr3 131698761 131698860 -27900923 + L1MC LINE L1 5706 5811 -2071 2 1589 270 0 0 0 chr3 131699155 131699185 -27900598 + (TG)n Simple_repeat Simple_repeat 2 31 0 2 1589 829 292 57 4 chr3 131699192 131699436 -27900347 - B4 SINE B4 -34 258 2 2 1589 22 70 0 0 chr3 131701689 131701732 -27898051 + AT_rich Low_complexity Low_complexity 1 43 0 2 1589 1056 96 0 0 chr3 131701811 131701988 -27897795 + (TC)n Simple_repeat Simple_repeat 2 178 0 2 1589 275 325 167 0 chr3 131702007 131702121 -27897662 - B1_Mur1 SINE Alu -16 133 1 2 1589 1345 290 123 114 chr3 131702263 131704270 -27895513 - L1MC3 LINE L1 -145 7640 5615 2 1589 993 283 96 52 chr3 131704277 131705096 -27894687 - L1MC3 LINE L1 -2372 5413 4540 2 1589 318 310 22 37 chr3 131705165 131705299 -27894484 - RMER12 LTR ERVK -458 864 733 2 1589 423 289 27 18 chr3 131705367 131705589 -27894194 - L1MC3 LINE L1 -1887 4259 4036 2 1589 2887 49 5 8 chr3 131705593 131705963 -27893820 + L1Md_F2 LINE L1 6214 6582 0 2 1589 1578 279 45 8 chr3 131705995 131706482 -27893301 + Lx8 LINE L1 6778 7282 -191 2 1589 824 182 7 26 chr3 131706581 131706733 -27893050 + B1_Mur3 SINE Alu 1 149 0 2 1589 4670 161 33 7 chr3 131707516 131708356 -27891427 - Lx4A LINE L1 -338 6720 5859 2 1589 1860 180 46 3 chr3 131708379 131708703 -27891080 - ORR1B2 LTR MaLR 0 367 30 2 1589 2944 69 8 0 chr3 131708777 131709153 -27890630 - L1_Mus1 LINE L1 0 6567 6189 2 1589 2738 68 0 3 chr3 131709153 131709521 -27890262 + L1_Mus1 LINE L1 5799 6165 -402 2 1589 3968 83 2 4 chr3 131710649 131711178 -27888605 - L1_Mus1 LINE L1 0 6567 6040 2 1589 2823 42 0 0 chr3 131711178 131711538 -27888245 + L1_Mus1 LINE L1 5680 6039 -527 2 1589 510 46 0 0 chr3 131711775 131711840 -27887943 + (CA)n Simple_repeat Simple_repeat 2 66 0 2 1589 1969 124 3 86 chr3 131712059 131712421 -27887362 + IAPLTR1a_Mm LTR ERVK 1 332 -5 2 1589 1251 225 108 3 chr3 131712904 131713220 -27886563 + ORR1D1 LTR MaLR 4 352 -22 2 1589 1838 169 149 11 chr3 131713220 131713590 -27886193 - MTC LTR MaLR 0 421 1 2 1589 1125 80 0 0 chr3 131713643 131713781 -27886002 - B1_Mm SINE Alu -9 138 1 2 1589 1840 194 154 48 chr3 131713784 131714305 -27885478 - RMER19B LTR ERVK -19 883 308 2 1589 340 392 23 76 chr3 131714490 131714661 -27885122 - RSINE1 SINE B4 0 165 4 2 1589 1489 306 62 6 chr3 131714663 131715134 -27884649 - RCHARR1 DNA MER1_type -477 497 1 2 1589 2318 108 6 0 chr3 131715260 131715584 -27884199 - ORR1A2 LTR MaLR -1 326 1 2 1589 258 302 47 16 chr3 131715694 131715822 -27883961 + MLT1L LTR MaLR 352 483 -127 2 1589 431 324 59 14 chr3 131716355 131716574 -27883209 + L1MEd LINE L1 551 779 -5340 2 1589 303 49 0 0 chr3 131717061 131717102 -27882681 + (CAA)n Simple_repeat Simple_repeat 2 42 0 2 1589 886 299 5 0 chr3 131718516 131718737 -27881046 + B4 SINE B4 2 223 -69 2 1589 357 330 99 99 chr3 131719076 131719429 -27880354 - MLT1A1 LTR MaLR -12 353 1 2 1589 810 241 58 15 chr3 131719711 131719917 -27879866 - B3 SINE B2 0 216 2 2 1589 703 236 85 0 chr3 131720022 131720187 -27879596 + B3 SINE B2 1 179 -37 2 1589 192 77 0 0 chr3 131720836 131720862 -27878921 + (TGG)n Simple_repeat Simple_repeat 3 28 0 2 1589 354 345 67 0 chr3 131720876 131720995 -27878788 - RSINE1 SINE B4 -36 129 3 2 1589 196 100 0 48 chr3 131721362 131721404 -27878379 + (GGGTG)n Simple_repeat Simple_repeat 4 43 0 2 1589 844 234 30 54 chr3 131722843 131723046 -27876737 - B3A SINE B2 -18 198 1 3 1589 30 69 0 0 chr3 131723658 131723716 -27876067 + AT_rich Low_complexity Low_complexity 1 58 0 3 1589 475 255 10 0 chr3 131723723 131723821 -27875962 - B1F SINE Alu -8 141 43 3 1589 39 22 0 0 chr3 131723857 131723903 -27875880 + AT_rich Low_complexity Low_complexity 1 46 0 3 1589 2791 141 57 2 chr3 131724812 131725282 -27874501 + Lx2 LINE L1 6501 6996 -1 3 1589 3071 192 74 90 chr3 131725396 131726300 -27873483 - RLTR13D6 LTR ERVK -12 890 1 3 1590 28 48 0 0 chr3 131729589 131729631 -27870152 + AT_rich Low_complexity Low_complexity 1 42 0 3 1590 1595 241 44 68 chr3 131730428 131730882 -27868901 + RMER19C LTR ERVK 169 611 0 3 1590 402 21 0 0 chr3 131731978 131732025 -27867758 + (TA)n Simple_repeat Simple_repeat 1 47 0 3 1590 207 188 0 0 chr3 131732230 131732278 -27867505 + (TTTA)n Simple_repeat Simple_repeat 2 49 0 3 1590 342 193 0 0 chr3 131732292 131732349 -27867434 - RSINE1 SINE B4 -104 61 5 3 1590 521 82 41 0 chr3 131732561 131732658 -27867125 + (TCTA)n Simple_repeat Simple_repeat 4 104 0 3 1590 2813 93 29 2 chr3 131733609 131734028 -27865755 - L1_Mus3 LINE L1 -1 6637 6208 3 1590 757 249 24 19 chr3 131734028 131734237 -27865546 - B3 SINE B2 -6 210 1 3 1590 225 0 0 0 chr3 131734258 131734283 -27865500 + (CAAAA)n Simple_repeat Simple_repeat 3 27 0 3 1590 1028 227 5 9 chr3 131735115 131735333 -27864450 + ID_B1 SINE B4 2 218 -6 3 1590 4445 92 41 14 chr3 131735452 131736083 -27863700 - Lx LINE L1 -9 6645 5998 3 1590 222 37 0 0 chr3 131736214 131736241 -27863542 + (T)n Simple_repeat Simple_repeat 1 27 0 3 1590 1763 39 13 4 chr3 131736267 131736498 -27863285 - L1Md_F3 LINE L1 -30 6554 6322 3 1590 4158 42 0 0 chr3 131736492 131737018 -27862765 + L1Md_T LINE L1 5795 6320 -262 3 1590 545 62 38 0 chr3 131737017 131737097 -27862686 - Lx LINE L1 -643 6011 5929 3 1590 285 333 0 45 chr3 131738166 131738276 -27861507 - B4A SINE B4 -179 113 9 3 1590 180 0 0 0 chr3 131739971 131739991 -27859792 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 3 1590 410 333 0 0 chr3 131740486 131740618 -27859165 + B1F1 SINE Alu 5 136 -13 3 1590 31 44 0 0 chr3 131740641 131740686 -27859097 + AT_rich Low_complexity Low_complexity 1 45 0 3 1590 366 310 80 33 chr3 131741630 131741780 -27858003 + MLT1B LTR MaLR 1 157 -233 3 1590 351 288 83 17 chr3 131741793 131741913 -27857870 + MLT1B LTR MaLR 340 467 0 3 1590 515 107 0 12 chr3 131742704 131742789 -27856994 + (TCCC)n Simple_repeat Simple_repeat 3 86 0 3 1590 367 227 78 43 chr3 131743126 131743241 -27856542 + ID_B1 SINE B4 102 220 -4 3 1590 880 48 0 0 chr3 131745251 131745356 -27854427 - U6 snRNA snRNA -2 105 1 3 1590 457 206 137 0 chr3 131745390 131745492 -27854291 - PB1D9 SINE Alu -2 118 3 3 1590 383 342 10 10 chr3 131746119 131746320 -27853463 - L1MB1 LINE L1 -2 6166 5966 3 1590 216 0 0 0 chr3 131746454 131746478 -27853305 + (GGA)n Simple_repeat Simple_repeat 2 25 0 3 1590 299 25 25 0 chr3 131746588 131746628 -27853155 + (CAAT)n Simple_repeat Simple_repeat 2 42 0 3 1590 185 94 31 0 chr3 131747318 131747350 -27852433 + (TGGGGG)n Simple_repeat Simple_repeat 4 36 0 3 1590 233 290 14 0 chr3 131748496 131748565 -27851218 + GA-rich Low_complexity Low_complexity 2 71 0 3 1590 186 250 233 0 chr3 131749580 131749640 -27850143 - MIR SINE MIR -31 231 158 3 1590 504 117 0 0 chr3 131750438 131750515 -27849268 + (TG)n Simple_repeat Simple_repeat 1 77 0 3 1590 300 53 0 0 chr3 131750667 131750705 -27849078 + (CATA)n Simple_repeat Simple_repeat 3 40 0 3 1590 585 42 0 0 chr3 131752701 131752773 -27847010 + (TA)n Simple_repeat Simple_repeat 2 73 0 3 1590 29 28 0 0 chr3 131754298 131754334 -27845449 + AT_rich Low_complexity Low_complexity 1 36 0 3 1590 25 51 0 0 chr3 131755198 131755237 -27844546 + AT_rich Low_complexity Low_complexity 1 39 0 3 1590 183 100 0 0 chr3 131755249 131755279 -27844504 + (TATAA)n Simple_repeat Simple_repeat 1 30 0 3 1590 196 308 14 0 chr3 131755641 131755719 -27844064 - MIR SINE MIR -6 262 180 3 1590 1111 82 0 27 chr3 131755829 131755979 -27843804 + B1_Mus1 SINE Alu 3 148 0 3 1590 371 50 0 48 chr3 131755979 131756042 -27843741 + (CAAAA)n Simple_repeat Simple_repeat 1 60 0 3 1590 413 353 7 22 chr3 131756045 131756181 -27843602 + B3A SINE B2 27 160 -38 3 1590 210 91 0 0 chr3 131756185 131756218 -27843565 + (CA)n Simple_repeat Simple_repeat 2 34 0 3 1590 335 105 0 17 chr3 131756584 131756642 -27843141 + (CA)n Simple_repeat Simple_repeat 1 57 0 3 1590 211 306 52 61 chr3 131756924 131757039 -27842744 + MIRc SINE MIR 52 165 -103 3 1590 261 0 0 0 chr3 131758475 131758504 -27841279 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 3 1590 423 0 0 0 chr3 131758861 131758908 -27840875 + (CA)n Simple_repeat Simple_repeat 2 48 0 3 1590 278 203 136 0 chr3 131759542 131759601 -27840182 - MER112 DNA MER1_type 0 261 195 3 1590 356 279 0 0 chr3 131762179 131762258 -27837525 + ID4_ SINE ID 3 81 -2 3 1590 270 0 0 0 chr3 131762766 131762796 -27836987 + (A)n Simple_repeat Simple_repeat 1 30 0 3 1590 234 0 0 0 chr3 131763737 131763763 -27836020 + (A)n Simple_repeat Simple_repeat 1 26 0 3 1590 252 0 0 0 chr3 131764476 131764504 -27835279 + (TAAA)n Simple_repeat Simple_repeat 1 28 0 3 1590 246 62 0 0 chr3 131767025 131767057 -27832726 + (TG)n Simple_repeat Simple_repeat 1 32 0 3 1590 234 357 23 45 chr3 131767082 131767170 -27832613 - LTR81A LTR ERV1? -873 477 392 3 1590 1473 114 14 61 chr3 131767436 131767716 -27832067 + Lx2 LINE L1 6731 6997 0 3 1590 359 342 67 65 chr3 131769345 131769803 -27829980 + L1ME3B LINE L1 5366 5832 -408 3 1590 504 32 0 0 chr3 131770075 131770137 -27829646 + (GA)n Simple_repeat Simple_repeat 2 63 0 3 1590 475 314 50 0 chr3 131770864 131771004 -27828779 + Charlie1a DNA MER1_type 486 632 -823 3 1590 490 254 17 0 chr3 131771262 131771380 -27828403 + B1_Mur1 SINE Alu 30 149 0 3 1590 234 0 0 0 chr3 131771525 131771551 -27828232 + (ATTG)n Simple_repeat Simple_repeat 4 29 0 3 1590 556 148 19 0 chr3 131771767 131771875 -27827908 + (TA)n Simple_repeat Simple_repeat 1 110 0 3 1590 300 53 0 0 chr3 131772693 131772731 -27827052 + (TG)n Simple_repeat Simple_repeat 1 38 0 3 1590 481 0 31 15 chr3 131772888 131772953 -27826830 + (TTTA)n Simple_repeat Simple_repeat 3 68 0 3 1590 435 113 0 0 chr3 131773802 131773873 -27825910 + (TG)n Simple_repeat Simple_repeat 2 72 0 3 1590 23 0 0 0 chr3 131775306 131775329 -27824454 + AT_rich Low_complexity Low_complexity 1 23 0 3 1590 233 146 0 20 chr3 131775688 131775737 -27824046 + (TA)n Simple_repeat Simple_repeat 1 48 0 3 1590 4937 184 39 14 chr3 131775778 131776802 -27822981 - Lx3C LINE L1 -2 6974 5925 3 1590 607 341 84 15 chr3 131777602 131777876 -27821907 - MLT1E2 LTR MaLR -332 295 3 3 1590 431 305 57 6 chr3 131778091 131778266 -27821517 + LSU-rRNA_Hsa rRNA rRNA 1493 1676 -3359 3 1590 277 368 87 24 chr3 131778266 131778472 -27821311 + MLT1C LTR MaLR 197 415 -52 3 1590 261 188 12 24 chr3 131778877 131778959 -27820824 + CT-rich Low_complexity Low_complexity 4 84 0 3 1590 207 0 0 0 chr3 131780109 131780132 -27819651 + (TA)n Simple_repeat Simple_repeat 1 23 0 3 1590 227 284 0 15 chr3 131780443 131780511 -27819272 + GA-rich Low_complexity Low_complexity 2 68 0 3 1590 211 93 0 44 chr3 131780512 131780557 -27819226 + (GGAGA)n Simple_repeat Simple_repeat 3 45 0 3 1590 1049 106 0 6 chr3 131780565 131780746 -27819037 + (GA)n Simple_repeat Simple_repeat 1 180 0 3 1590 338 0 24 0 chr3 131782422 131782464 -27817319 + (TATG)n Simple_repeat Simple_repeat 2 44 0 3 1590 259 333 23 11 chr3 131782518 131782606 -27817177 - PB1D10 SINE Alu -1 116 28 3 1590 463 242 90 8 chr3 131782980 131783113 -27816670 - B1_Mur1 SINE Alu -4 145 2 3 1590 926 126 6 0 chr3 131783267 131783434 -27816349 + (CA)n Simple_repeat Simple_repeat 1 168 0 3 1590 229 268 28 0 chr3 131783449 131783520 -27816263 - Lx9 LINE L1 -184 7460 7388 3 1590 228 242 15 0 chr3 131783558 131783624 -27816159 + (TCTG)n Simple_repeat Simple_repeat 2 68 0 3 1590 333 0 0 0 chr3 131783625 131783662 -27816121 + (CA)n Simple_repeat Simple_repeat 2 38 0 3 1590 235 340 10 0 chr3 131783662 131783759 -27816024 - Lx9 LINE L1 -307 7337 7240 3 1590 233 343 0 15 chr3 131785183 131785251 -27814532 - L2b LINE L2 0 3375 3309 3 1590 402 311 0 19 chr3 131786890 131786995 -27812788 - PB1D10 SINE Alu 0 117 15 3 1590 22 56 0 0 chr3 131786995 131787031 -27812752 + AT_rich Low_complexity Low_complexity 1 36 0 3 1590 228 83 62 0 chr3 131787087 131787135 -27812648 + (TA)n Simple_repeat Simple_repeat 2 52 0 3 1590 2196 61 0 0 chr3 131787507 131787786 -27811997 - L1Md_A LINE L1 0 6582 6304 3 1590 914 122 0 6 chr3 131788046 131788227 -27811556 + (GA)n Simple_repeat Simple_repeat 1 180 0 3 1590 264 110 26 52 chr3 131788238 131788315 -27811468 + (CAGAGA)n Simple_repeat Simple_repeat 2 76 0 3 1590 314 307 79 0 chr3 131789638 131789765 -27810018 - MER103 DNA DNA -23 143 7 3 1590 180 0 0 0 chr3 131792270 131792290 -27807493 + (CAGA)n Simple_repeat Simple_repeat 4 23 0 3 1590 813 54 0 0 chr3 131792303 131792414 -27807369 + (CA)n Simple_repeat Simple_repeat 2 112 0 3 1590 424 279 62 50 chr3 131792721 131792893 -27806890 - MIRb SINE MIR -93 183 9 3 1590 261 0 0 0 chr3 131795813 131795842 -27803941 + (TTCA)n Simple_repeat Simple_repeat 2 30 0 3 1590 300 265 157 0 chr3 131795867 131796014 -27803769 - L1MD1 LINE L1 -15 6227 6058 3 1590 1858 125 68 62 chr3 131796223 131796548 -27803235 + ORR1A2 LTR MaLR 1 327 0 3 1590 527 57 11 33 chr3 131796915 131797006 -27802777 + (TTTC)n Simple_repeat Simple_repeat 1 89 0 3 1590 188 67 0 32 chr3 131797055 131797086 -27802697 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 4 1590 383 244 22 29 chr3 131797860 131797999 -27801784 - Lx6 LINE L1 -4 7456 7319 4 1590 237 300 0 24 chr3 131798060 131798142 -27801641 - Lx7 LINE L1 -472 7224 7145 4 1590 269 376 10 0 chr3 131798420 131798521 -27801262 - Tigger5 DNA MER2_type -14 2392 2291 4 1590 190 265 0 20 chr3 131798868 131798918 -27800865 + MIR SINE MIR 136 184 -78 4 1590 234 340 205 0 chr3 131799751 131799907 -27799876 + MIRb SINE MIR 23 210 -58 4 1590 258 283 232 0 chr3 131800355 131800454 -27799329 + L3b LINE CR1 198 319 -163 4 1590 365 164 14 0 chr3 131800480 131800553 -27799230 + CT-rich Low_complexity Low_complexity 3 76 0 4 1590 690 230 32 31 chr3 131801721 131801908 -27797875 + B3 SINE B2 10 186 -9 4 1590 234 81 0 0 chr3 131802740 131802777 -27797006 + (CA)n Simple_repeat Simple_repeat 1 37 0 4 1590 396 321 115 10 chr3 131802837 131803029 -27796754 - MIR SINE MIR -34 228 17 4 1590 498 239 9 9 chr3 131803066 131803176 -27796607 + PB1D10 SINE Alu 1 110 -7 4 1590 276 130 0 0 chr3 131803296 131803342 -27796441 + (GGGA)n Simple_repeat Simple_repeat 4 49 0 4 1590 995 70 13 0 chr3 131803344 131803501 -27796282 + (CAGAGA)n Simple_repeat Simple_repeat 4 162 0 4 1590 204 359 0 0 chr3 131804960 131805024 -27794759 + CT-rich Low_complexity Low_complexity 1 64 0 4 1590 1984 248 34 30 chr3 131806776 131807367 -27792416 - Lx7 LINE L1 -128 7568 6976 4 1590 210 237 0 0 chr3 131807377 131807453 -27792330 + CT-rich Low_complexity Low_complexity 2 77 0 4 1590 491 222 6 12 chr3 131807471 131807790 -27791993 + CT-rich Low_complexity Low_complexity 1 317 0 4 1590 1404 174 40 17 chr3 131807791 131808090 -27791693 - Lx7 LINE L1 -684 7012 6707 4 1590 303 338 26 46 chr3 131808560 131808712 -27791071 + L1M5 LINE L1 2375 2523 -3623 4 1590 182 333 0 16 chr3 131809152 131809216 -27790567 - MIR SINE MIR -141 121 59 4 1590 21 0 0 0 chr3 131809701 131809722 -27790061 + AT_rich Low_complexity Low_complexity 1 21 0 4 1590 21 0 0 0 chr3 131810815 131810836 -27788947 + AT_rich Low_complexity Low_complexity 1 21 0 4 1590 959 324 21 11 chr3 131811482 131811763 -27788020 - B4A SINE B4 -8 284 1 4 1590 714 96 0 0 chr3 131812764 131812868 -27786915 + (GA)n Simple_repeat Simple_repeat 2 105 0 4 1590 492 18 0 0 chr3 131812868 131812924 -27786859 + (GGAA)n Simple_repeat Simple_repeat 1 57 0 4 1590 1152 276 54 16 chr3 131812927 131813240 -27786543 - MTE2b LTR MaLR -40 339 15 4 1590 1899 85 10 28 chr3 131814242 131814533 -27785250 - L1_Mus3 LINE L1 -3 6635 6350 4 1590 427 312 119 8 chr3 131815119 131815245 -27784538 + B1F1 SINE Alu 10 149 0 4 1590 21 36 0 0 chr3 131815452 131815480 -27784303 + AT_rich Low_complexity Low_complexity 1 28 0 4 1590 270 0 0 0 chr3 131817854 131817884 -27781899 + (T)n Simple_repeat Simple_repeat 1 30 0 4 1590 212 59 0 29 chr3 131818754 131818789 -27780994 + (TAAAAA)n Simple_repeat Simple_repeat 2 35 0 4 1590 289 357 61 15 chr3 131818937 131819068 -27780715 + MER5A DNA MER1_type 49 185 -4 4 1590 271 232 20 50 chr3 131819250 131819350 -27780433 + L1MB5 LINE L1 6070 6166 -8 4 1590 297 222 10 20 chr3 131819490 131819591 -27780192 + CT-rich Low_complexity Low_complexity 6 105 0 4 1590 414 0 0 0 chr3 131820042 131820088 -27779695 + (TC)n Simple_repeat Simple_repeat 1 46 0 4 1590 216 206 0 56 chr3 131820093 131820165 -27779618 + (TCTCTG)n Simple_repeat Simple_repeat 1 68 0 4 1590 451 300 25 8 chr3 131820165 131820298 -27779485 - B1F SINE Alu -8 141 7 4 1590 25 0 0 0 chr3 131821638 131821663 -27778120 + AT_rich Low_complexity Low_complexity 1 25 0 4 1590 1138 139 39 0 chr3 131822759 131822939 -27776844 + B2_Mm2 SINE B2 1 187 -8 4 1590 378 0 0 0 chr3 131823921 131823963 -27775820 + (TTTA)n Simple_repeat Simple_repeat 1 42 0 4 1590 1047 64 0 0 chr3 131825626 131825767 -27774016 + L1Md_T LINE L1 6442 6582 0 4 1590 180 0 0 0 chr3 131826745 131826765 -27773018 + (TG)n Simple_repeat Simple_repeat 1 20 0 4 1590 703 179 199 14 chr3 131827774 131827995 -27771788 + Lx9 LINE L1 7307 7568 -76 4 1590 29 47 0 0 chr3 131828835 131828878 -27770905 + AT_rich Low_complexity Low_complexity 1 43 0 4 1590 416 270 38 45 chr3 131828930 131829062 -27770721 + RSINE1 SINE B4 4 134 -31 4 1590 1499 200 113 3 chr3 131829180 131829561 -27770222 - Lx9 LINE L1 -23 7621 7199 4 1590 1107 175 11 80 chr3 131829565 131829839 -27769944 + Lx9 LINE L1 6952 7206 -438 4 1590 367 296 77 17 chr3 131830045 131830162 -27769621 - B1F SINE Alu -15 134 11 4 1590 531 107 0 0 chr3 131830237 131830321 -27769462 + (TCTA)n Simple_repeat Simple_repeat 3 86 0 4 1590 471 233 91 8 chr3 131830364 131830485 -27769298 - RSINE1 SINE B4 -31 134 4 4 1590 1092 88 7 7 chr3 131830694 131830842 -27768941 + B1_Mus1 SINE Alu 1 148 0 4 1590 207 0 0 0 chr3 131830844 131830867 -27768916 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 4 1590 953 140 6 0 chr3 131832310 131832474 -27767309 + (TTCC)n Simple_repeat Simple_repeat 4 168 0 4 1590 295 196 191 26 chr3 131832476 131832591 -27767192 - Lx4B LINE L1 -8 7050 6917 4 1590 441 0 0 0 chr3 131832684 131832733 -27767050 + (TC)n Simple_repeat Simple_repeat 2 50 0 4 1590 450 0 0 0 chr3 131832733 131832782 -27767001 + (TG)n Simple_repeat Simple_repeat 1 50 0 4 1590 228 111 0 0 chr3 131833557 131833593 -27766190 + (CAA)n Simple_repeat Simple_repeat 3 38 0 4 1590 356 264 111 8 chr3 131834651 131834777 -27765006 - MER121 Unknown Unknown -164 248 110 4 1590 579 191 0 0 chr3 131835145 131835378 -27764405 + GA-rich Low_complexity Low_complexity 1 233 0 4 1590 500 299 35 50 chr3 131835628 131835769 -27764014 + B1F SINE Alu 6 144 -5 4 1590 525 71 0 0 chr3 131839488 131839558 -27760225 + (CGTG)n Simple_repeat Simple_repeat 1 70 0 4 1590 646 325 54 29 chr3 131840200 131840476 -27759307 + B4A SINE B4 6 288 -4 4 1590 241 282 14 0 chr3 131840486 131840557 -27759226 + (CA)n Simple_repeat Simple_repeat 1 72 0 4 1590 249 132 0 0 chr3 131841689 131841727 -27758056 + tRNA-Ser-TCY tRNA tRNA 1 38 -47 4 1590 929 146 0 11 chr3 131842583 131842763 -27757020 + GA-rich Low_complexity Low_complexity 1 178 0 4 1590 22 35 0 0 chr3 131843088 131843117 -27756666 + AT_rich Low_complexity Low_complexity 1 29 0 4 1590 22 35 0 0 chr3 131843221 131843250 -27756533 + AT_rich Low_complexity Low_complexity 1 29 0 4 1590 202 362 68 8 chr3 131843406 131843523 -27756260 - L3 LINE CR1 -140 4349 4226 4 1590 806 172 49 31 chr3 131843686 131844008 -27755775 + RMER10A LTR ERVL 1 418 -24 4 1590 198 0 0 0 chr3 131844011 131844033 -27755750 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 4 1590 1480 98 51 0 chr3 131844894 131845128 -27754655 - L1_Mus3 LINE L1 -8 6630 6385 4 1590 3847 114 161 11 chr3 131845330 131845970 -27753813 - RMER19A LTR ERVK -1 736 1 4 1590 616 129 10 0 chr3 131846118 131846219 -27753564 - BC1_Mm scRNA scRNA -50 102 1 4 1590 631 215 19 181 chr3 131847200 131847466 -27752317 - Lx9 LINE L1 -8 7636 7429 4 1590 468 0 0 0 chr3 131847466 131847518 -27752265 + (TA)n Simple_repeat Simple_repeat 1 52 0 4 1590 631 215 19 181 chr3 131847518 131847626 -27752157 - Lx9 LINE L1 -216 7428 7323 4 1590 1549 230 3 12 chr3 131847625 131847960 -27751823 + Lx9 LINE L1 6581 6912 -732 4 1590 1393 56 0 0 chr3 131849411 131849591 -27750192 + L1_Mus1 LINE L1 6387 6566 -1 4 1590 2301 107 3 58 chr3 131851386 131851732 -27748051 + ORR1A2 LTR MaLR 1 327 0 4 1590 255 23 68 0 chr3 131852265 131852309 -27747474 + (TTTTTG)n Simple_repeat Simple_repeat 2 48 0 4 1590 588 325 15 20 chr3 131853012 131853210 -27746573 + B3A SINE B2 1 197 -1 4 1590 895 311 44 29 chr3 131853329 131853644 -27746139 - Lx6 LINE L1 -84 7376 7057 4 1590 216 182 45 0 chr3 131854544 131854588 -27745195 + A-rich Low_complexity Low_complexity 2 47 0 4 1590 1017 120 72 0 chr3 131857020 131857187 -27742596 + B2_Mm1t SINE B2 3 181 -12 4 1590 379 110 161 49 chr3 131857198 131857306 -27742477 + B2_Mm2 SINE B2 47 182 -11 4 1590 357 62 0 0 chr3 131857323 131857371 -27742412 + (TG)n Simple_repeat Simple_repeat 1 48 0 4 1590 734 305 5 10 chr3 131857371 131857556 -27742227 - B3 SINE B2 -31 185 1 4 1590 362 195 96 8 chr3 131857594 131857767 -27742016 - Lx7 LINE L1 -1621 6075 5937 4 1590 623 176 92 0 chr3 131857773 131857904 -27741879 + Lx9 LINE L1 7261 7403 -241 4 1590 495 0 0 0 chr3 131857931 131857986 -27741797 + (TA)n Simple_repeat Simple_repeat 2 56 0 4 1590 493 148 30 52 chr3 131857988 131858123 -27741660 + Lx9 LINE L1 7513 7644 0 4 198 8772 156 36 10 chr3 131858291 131860753 -27739030 - Lx4B LINE L1 -286 6772 4285 4 1591 288 250 0 0 chr3 131860855 131860915 -27738868 + B3A SINE B2 3 62 -136 4 1591 191 325 13 13 chr3 131860927 131861005 -27738778 + L4 LINE RTE 1759 1836 -193 4 1591 478 298 50 58 chr3 131861018 131861296 -27738487 + B4A SINE B4 1 276 -16 4 1591 450 0 0 0 chr3 131861375 131861425 -27738358 + (TAA)n Simple_repeat Simple_repeat 2 51 0 4 1591 747 303 5 10 chr3 131863139 131863336 -27736447 + B3 SINE B2 1 196 -20 4 1591 1148 66 0 0 chr3 131863423 131863560 -27736223 - B1_Mm SINE Alu -10 137 1 4 1591 963 252 55 26 chr3 131863644 131864064 -27735719 - Lx9 LINE L1 -43 7601 7170 4 1591 21 0 0 0 chr3 131864239 131864260 -27735523 + AT_rich Low_complexity Low_complexity 1 21 0 4 1591 2478 152 49 0 chr3 131864260 131864669 -27735114 - Lx4A LINE L1 0 7058 6630 4 1591 813 316 35 98 chr3 131867159 131867386 -27732397 - Lx8 LINE L1 -1050 6423 6201 4 1591 479 54 27 0 chr3 131867386 131867460 -27732323 + (TCTG)n Simple_repeat Simple_repeat 2 77 0 4 1591 813 316 35 98 chr3 131867460 131867912 -27731871 - Lx8 LINE L1 -1273 6200 5787 4 1591 772 221 7 7 chr3 131868525 131868675 -27731108 - RSINE1 SINE B4 -15 150 1 4 1591 321 153 0 0 chr3 131869544 131869616 -27730167 + (TA)n Simple_repeat Simple_repeat 1 72 0 5 1591 3088 33 0 0 chr3 131869616 131869979 -27729804 - L1Md_F2 LINE L1 -8 6574 6212 5 1591 255 61 0 0 chr3 131871254 131871287 -27728496 + (TG)n Simple_repeat Simple_repeat 2 34 0 5 1591 318 278 284 0 chr3 131871287 131871420 -27728363 - B3A SINE B2 -48 168 1 5 1591 699 94 0 0 chr3 131871622 131871728 -27728055 - L1_Mus1 LINE L1 -3 6564 6459 5 1591 558 118 0 0 chr3 131871911 131872004 -27727779 + (CA)n Simple_repeat Simple_repeat 1 93 0 5 1591 460 249 60 30 chr3 131872012 131872178 -27727605 - L1MA4A LINE L1 -367 5936 5766 5 1591 1360 255 86 16 chr3 131872196 131872698 -27727085 + Lx9 LINE L1 7107 7643 -1 5 1591 1374 64 10 26 chr3 131873001 131873194 -27726589 - B2_Mm2 SINE B2 -3 192 3 5 1591 1319 315 42 8 chr3 131873225 131873731 -27726052 + RMER15-int LTR ERVL 4167 4689 -310 5 1591 361 242 0 29 chr3 131873751 131873853 -27725930 - RMER12 LTR ERVK -453 869 771 5 1591 579 29 0 0 chr3 131873868 131873937 -27725846 + (CA)n Simple_repeat Simple_repeat 2 70 0 5 1591 2013 196 39 76 chr3 131873939 131874397 -27725386 - MT2A LTR ERVL -92 441 1 5 1591 575 289 44 40 chr3 131874397 131874624 -27725159 + RMER15 LTR ERVL 345 572 -3 5 1591 460 189 13 0 chr3 131874627 131874716 -27725067 + MTEa LTR MaLR 287 376 -3 5 1591 522 203 17 22 chr3 131874855 131874869 -27724914 + (TA)n Simple_repeat Simple_repeat 1 14 0 5 1591 411 21 0 0 chr3 131874869 131874917 -27724866 + (TG)n Simple_repeat Simple_repeat 1 48 0 5 1591 522 203 17 22 chr3 131874917 131875083 -27724700 + (TA)n Simple_repeat Simple_repeat 1 166 0 5 1591 1734 279 72 68 chr3 131875661 131875790 -27723993 - RMER1C Other Other -169 1173 1040 5 1591 1390 49 43 0 chr3 131875790 131875818 -27723965 - B2_Mm1a SINE B2 0 193 162 5 1591 342 0 0 0 chr3 131875818 131875856 -27723927 + (TTTA)n Simple_repeat Simple_repeat 3 40 0 5 1591 1390 49 43 0 chr3 131875856 131876012 -27723771 - B2_Mm1a SINE B2 -32 161 2 5 1591 1734 271 72 68 chr3 131876012 131876793 -27722990 - RMER1C Other Other -303 1039 43 5 1591 456 356 137 38 chr3 131877017 131877332 -27722451 - ORR1E LTR MaLR 0 359 14 5 1591 430 296 83 10 chr3 131877417 131877719 -27722064 + MER33 DNA MER1_type 6 324 0 5 1591 282 381 118 30 chr3 131878354 131878557 -27721226 + MIRb SINE MIR 34 254 -14 5 1591 736 238 54 5 chr3 131879339 131879525 -27720258 + B3 SINE B2 16 210 -6 5 1591 515 332 68 0 chr3 131879534 131879739 -27720044 - Lx9 LINE L1 -1099 6545 6327 5 1591 254 340 0 11 chr3 131879922 131880017 -27719766 - Lx9 LINE L1 -1670 5974 5881 5 1591 440 271 40 17 chr3 131880024 131880197 -27719586 + Lx9 LINE L1 7315 7491 -153 5 1591 285 175 0 16 chr3 131880592 131880656 -27719127 - Lx7 LINE L1 0 7696 7634 5 1591 204 158 0 0 chr3 131880656 131880694 -27719089 + (TA)n Simple_repeat Simple_repeat 2 39 0 5 1591 285 197 0 0 chr3 131881052 131881113 -27718670 + (ATG)n Simple_repeat Simple_repeat 1 61 0 5 1591 29 47 0 0 chr3 131881230 131881273 -27718510 + AT_rich Low_complexity Low_complexity 1 43 0 5 1591 340 318 122 13 chr3 131881273 131881429 -27718354 - B3A SINE B2 -16 182 10 5 1591 936 138 88 10 chr3 131881515 131881720 -27718063 - Lx9 LINE L1 -135 7509 7289 5 1591 440 216 7 0 chr3 131881866 131882019 -27717764 + GA-rich Low_complexity Low_complexity 2 155 0 5 1591 497 323 76 68 chr3 131882242 131882597 -27717186 - ORR1E LTR MaLR 0 359 2 5 1591 228 167 42 62 chr3 131885723 131885819 -27713964 + A-rich Low_complexity Low_complexity 4 97 0 5 1591 714 117 0 0 chr3 131886313 131886424 -27713359 + (TC)n Simple_repeat Simple_repeat 1 111 0 5 1591 297 174 58 11 chr3 131886971 131887058 -27712725 - L1MEc LINE L1 -4045 2355 2265 5 1591 839 226 95 30 chr3 131887434 131887804 -27711979 - Lx9 LINE L1 -7 7637 7244 5 1591 841 254 9 28 chr3 131887811 131888026 -27711757 - B3 SINE B2 -2 214 4 5 1591 6525 59 5 0 chr3 131888664 131889496 -27710287 + L1Md_F2 LINE L1 5735 6570 -12 5 1591 3399 290 85 31 chr3 131889581 131891144 -27708639 + Lx9 LINE L1 5859 7640 -4 5 1591 568 174 0 0 chr3 131891279 131891371 -27708412 + Lx9 LINE L1 7171 7262 -382 5 1591 324 197 16 16 chr3 131892011 131892073 -27707710 + ID4 SINE ID 12 73 -10 5 1591 25 51 0 0 chr3 131892327 131892366 -27707417 + AT_rich Low_complexity Low_complexity 1 39 0 5 1591 1907 157 0 87 chr3 131892804 131893182 -27706601 + Lx3A LINE L1 6626 6970 -11 5 1591 456 19 0 0 chr3 131893182 131893235 -27706548 + (TAAAA)n Simple_repeat Simple_repeat 2 54 0 5 1591 235 380 0 44 chr3 131893410 131893545 -27706238 + MIR SINE MIR 110 238 -24 5 1591 1243 193 5 0 chr3 131893759 131893982 -27705801 - URR1B DNA MER1_type -1 224 1 5 1591 208 0 62 0 chr3 131894394 131894426 -27705357 + (TTTTTG)n Simple_repeat Simple_repeat 3 36 0 5 1591 533 283 142 28 chr3 131894582 131894829 -27704954 + RMER15 LTR ERVL 288 562 -13 5 1591 2171 117 13 3 chr3 131894867 131895185 -27704598 - ORR1A2 LTR MaLR -6 321 1 5 1591 23 0 0 0 chr3 131895275 131895298 -27704485 + AT_rich Low_complexity Low_complexity 1 23 0 5 1591 219 36 0 0 chr3 131895413 131895441 -27704342 + (TTTTA)n Simple_repeat Simple_repeat 2 29 0 5 1591 568 269 30 115 chr3 131896403 131896638 -27703145 - B3 SINE B2 -1 215 1 5 1591 581 104 145 29 chr3 131897163 131897301 -27702482 + Lx3_Mus LINE L1 6856 7009 0 5 1591 26 0 0 0 chr3 131897342 131897368 -27702415 + AT_rich Low_complexity Low_complexity 1 26 0 5 1591 1220 240 26 14 chr3 131897385 131897736 -27702047 + Lx9 LINE L1 7093 7447 -197 5 1591 522 0 0 0 chr3 131897736 131897794 -27701989 + (TC)n Simple_repeat Simple_repeat 2 59 0 5 1591 243 0 0 0 chr3 131897794 131897820 -27701963 + (TG)n Simple_repeat Simple_repeat 2 28 0 5 1591 305 231 65 11 chr3 131897829 131897921 -27701862 + Lx9 LINE L1 7526 7622 -22 5 1591 25 0 0 0 chr3 131897951 131897976 -27701807 + AT_rich Low_complexity Low_complexity 1 25 0 5 1591 262 340 51 10 chr3 131898218 131898405 -27701378 - B2_Mm2 SINE B2 -1 197 2 5 1591 516 193 0 28 chr3 131898483 131898568 -27701215 + polypyrimidine Low_complexity Low_complexity 59 141 0 5 1591 1263 94 0 0 chr3 131898568 131898748 -27701035 + (TTCTCC)n Simple_repeat Simple_repeat 1 180 0 5 1591 516 193 0 28 chr3 131898748 131898806 -27700977 + polypyrimidine Low_complexity Low_complexity 3 58 0 5 1591 309 292 30 40 chr3 131899402 131899502 -27700281 + B1F1 SINE Alu 46 144 -5 5 1591 435 348 133 2 chr3 131900290 131900697 -27699086 - MLT1C LTR MaLR -8 459 1 5 1591 257 362 68 36 chr3 131900989 131901181 -27698602 + ORR1E LTR MaLR 10 207 -152 5 1591 2284 180 35 8 chr3 131901757 131902155 -27697628 + MTC LTR MaLR 13 421 0 5 1591 508 320 75 10 chr3 131902201 131902507 -27697276 + L1M1 LINE L1 5346 5671 -518 5 1591 250 302 71 20 chr3 131902513 131902611 -27697172 + RMER12 LTR ERVK 750 852 -470 5 1591 791 282 122 58 chr3 131903086 131903429 -27696354 - MTEa LTR MaLR -11 368 4 5 1591 421 292 34 27 chr3 131903717 131903865 -27695918 - L2 LINE L2 -987 2432 2284 5 1591 286 152 0 0 chr3 131904843 131904889 -27694894 - L1_Mur3 LINE L1 -1086 4794 4749 5 1591 2723 142 26 32 chr3 131904909 131905404 -27694379 - Lx3C LINE L1 -3 6973 6482 5 1591 3712 115 38 3 chr3 131905411 131905995 -27693788 + Lx3B LINE L1 5799 6402 -571 5 1591 1185 88 6 6 chr3 131906054 131906226 -27693557 - L1_Mus1 LINE L1 0 6567 6396 5 1591 411 258 194 91 chr3 131906536 131906711 -27693072 + B4A SINE B4 100 292 0 5 1591 590 218 60 32 chr3 131906765 131906950 -27692833 + Lx7 LINE L1 6859 7048 -648 5 1591 7179 170 62 13 chr3 131906943 131908395 -27691388 + Lx4B LINE L1 5525 7045 -13 5 1591 375 152 0 0 chr3 131908395 131908474 -27691309 + GA-rich Low_complexity Low_complexity 1 79 0 5 1591 772 249 36 36 chr3 131908503 131908728 -27691055 + Lx7 LINE L1 7062 7286 -410 5 1591 261 217 8 73 chr3 131908742 131908866 -27690917 + T-rich Low_complexity Low_complexity 5 120 0 5 1591 314 366 108 17 chr3 131908982 131909279 -27690504 - Charlie13a DNA Charlie -920 594 271 5 1591 470 246 16 16 chr3 131909287 131909411 -27690372 + BC1_Mm scRNA scRNA 1 124 -28 5 1591 503 295 73 71 chr3 131910312 131910637 -27689146 - MLT1B LTR MaLR 0 408 68 5 1591 563 208 146 28 chr3 131911251 131911464 -27688319 - Lx9 LINE L1 -27 7617 7380 5 1591 300 27 0 0 chr3 131911465 131911502 -27688281 + (CA)n Simple_repeat Simple_repeat 2 38 0 5 1591 413 321 54 54 chr3 131913035 131913239 -27686544 + Lx8 LINE L1 6916 7119 -354 5 1591 456 309 30 4 chr3 131913485 131913722 -27686061 + L1MB5 LINE L1 5602 5844 -330 5 1591 2663 259 52 22 chr3 131915846 131916702 -27683081 - RCHARR1 DNA MER1_type -58 916 10 5 1591 1414 218 146 31 chr3 131917000 131917384 -27682399 - RMER19B LTR ERVK 0 902 475 5 1591 307 321 71 27 chr3 131917445 131917557 -27682226 + B4 SINE B4 14 130 -162 5 1591 314 260 27 0 chr3 131917552 131917625 -27682158 + ID_B1 SINE B4 135 209 -15 5 1591 293 355 115 16 chr3 131918510 131918693 -27681090 - MLT1B LTR MaLR 0 390 190 5 1591 207 0 0 0 chr3 131919345 131919368 -27680415 + (TC)n Simple_repeat Simple_repeat 2 24 0 5 1591 369 95 0 0 chr3 131919370 131919433 -27680350 + (TAGA)n Simple_repeat Simple_repeat 4 66 0 5 1591 590 231 90 80 chr3 131920018 131920206 -27679577 - B3A SINE B2 -2 196 7 5 1591 261 83 0 0 chr3 131920208 131920244 -27679539 + (TTTG)n Simple_repeat Simple_repeat 3 38 0 5 1591 248 321 12 0 chr3 131920255 131920336 -27679447 + L1MC4 LINE L1 7592 7673 -369 5 1591 4391 183 34 73 chr3 131920971 131921896 -27677887 + RMER19B LTR ERVK 1 888 -14 5 1591 543 329 46 36 chr3 131921925 131922228 -27677555 - RLTR23 LTR ERV1 -21 409 104 5 1591 441 0 0 0 chr3 131922302 131922351 -27677432 + (TTTTG)n Simple_repeat Simple_repeat 2 50 0 6 1591 336 235 93 12 chr3 131922360 131922446 -27677337 - RLTR23 LTR ERV1 -330 100 8 5 1591 27 0 0 0 chr3 131923270 131923297 -27676486 + AT_rich Low_complexity Low_complexity 1 27 0 6 1591 756 177 0 65 chr3 131924476 131924645 -27675138 + Lx4A LINE L1 6894 7051 -7 6 1591 2796 132 40 8 chr3 131924647 131925121 -27674662 + Lx3B LINE L1 6482 6970 -3 6 1591 504 0 0 0 chr3 131925140 131925196 -27674587 + (CA)n Simple_repeat Simple_repeat 1 56 0 6 1591 23 33 0 0 chr3 131925975 131926005 -27673778 + AT_rich Low_complexity Low_complexity 1 30 0 6 1591 1834 232 23 2 chr3 131926067 131926460 -27673323 - MTD LTR MaLR 0 419 19 6 1591 288 0 0 0 chr3 131927505 131927537 -27672246 + (CA)n Simple_repeat Simple_repeat 2 33 0 6 1591 210 191 0 0 chr3 131928129 131928171 -27671612 + T-rich Low_complexity Low_complexity 1 42 0 6 1591 852 111 0 0 chr3 131928850 131929003 -27670780 + (TC)n Simple_repeat Simple_repeat 2 154 0 6 1591 425 308 73 106 chr3 131929279 131929837 -27669946 + LTR48 LTR ERV1 109 785 -2 6 1591 21 0 0 0 chr3 131930146 131930167 -27669616 + AT_rich Low_complexity Low_complexity 1 21 0 6 1591 913 261 5 9 chr3 131930167 131930384 -27669399 - B3 SINE B2 0 216 1 6 1591 484 293 39 20 chr3 131930938 131931091 -27668692 + RSINE1 SINE B4 10 165 0 6 1591 36 0 0 0 chr3 131931109 131931145 -27668638 + AT_rich Low_complexity Low_complexity 1 36 0 6 1591 1321 169 76 0 chr3 131931475 131931711 -27668072 + Lx5 LINE L1 6372 6625 -425 6 1591 2010 210 20 7 chr3 131932034 131932442 -27667341 + Lx4B LINE L1 6646 7058 0 6 1591 487 317 0 0 chr3 131932471 131932591 -27667192 + PB1 SINE Alu 1 120 -7 6 1591 302 360 95 0 chr3 131932591 131932791 -27666992 + L1M5 LINE L1 5418 5636 -604 6 1591 4867 181 63 5 chr3 131933677 131934678 -27665105 + Lx3C LINE L1 5916 6974 -2 6 1591 587 233 52 0 chr3 131934825 131934941 -27664842 + B1_Mur1 SINE Alu 6 127 -22 6 1591 321 135 0 0 chr3 131934948 131935000 -27664783 + (CAA)n Simple_repeat Simple_repeat 1 52 0 6 1591 212 171 0 68 chr3 131935000 131935044 -27664739 + polypurine Low_complexity Low_complexity 2 42 0 6 1591 1117 284 18 44 chr3 131935390 131935733 -27664050 - Lx8 LINE L1 -15 7458 7125 6 1591 203 171 0 0 chr3 131935758 131935799 -27663984 + A-rich Low_complexity Low_complexity 2 42 0 6 1591 342 0 0 0 chr3 131936100 131936138 -27663645 + (A)n Simple_repeat Simple_repeat 1 38 0 6 1591 589 252 26 26 chr3 131936547 131936702 -27663081 - RSINE1 SINE B4 -8 157 3 6 1591 247 276 138 15 chr3 131939235 131939430 -27660353 + L1MD3 LINE L1 7763 7981 -14 6 1591 556 313 118 45 chr3 131940640 131940962 -27658821 - LTR40c LTR ERVL -134 328 1 6 1591 1353 168 0 5 chr3 131941168 131941390 -27658393 - URR1B DNA MER1_type 0 225 5 6 1591 336 354 30 6 chr3 131941506 131941671 -27658112 + RMER15 LTR ERVL 402 570 -5 6 1591 261 368 36 22 chr3 131942585 131942623 -27657160 + RLTR19-int LTR ERVK 4330 4466 -1667 6 1591 287 281 31 10 chr3 131942623 131942720 -27657063 + MER52-int LTR ERV1 6301 6399 -692 6 1591 3652 255 79 54 chr3 131943839 131945087 -27654696 - MMAR1 DNA Mariner -6 1280 1 6 1591 643 267 113 35 chr3 131946211 131946645 -27653138 + L1M2 LINE L1 3308 3775 -2368 6 1591 25 0 0 0 chr3 131946772 131946797 -27652986 + AT_rich Low_complexity Low_complexity 1 25 0 6 1591 423 0 0 0 chr3 131947004 131947051 -27652732 + (CA)n Simple_repeat Simple_repeat 2 48 0 6 1591 23 0 0 0 chr3 131947648 131947671 -27652112 + AT_rich Low_complexity Low_complexity 1 23 0 6 1591 4494 139 41 4 chr3 131947772 131948504 -27651279 - Lx2 LINE L1 -270 6727 5969 6 1591 4198 147 41 6 chr3 131948731 131949702 -27650081 - Lx2B LINE L1 -653 6347 5351 6 1591 2800 212 70 19 chr3 131949703 131950320 -27649463 + Lx2B LINE L1 6346 6993 -7 6 1591 1368 67 0 0 chr3 131951079 131951259 -27648524 + (TATG)n Simple_repeat Simple_repeat 1 180 0 6 1591 980 139 12 0 chr3 131951261 131951317 -27648466 + (TATATG)n Simple_repeat Simple_repeat 5 60 0 6 1591 1275 89 0 0 chr3 131951317 131951496 -27648287 + (TATG)n Simple_repeat Simple_repeat 2 180 0 6 1591 980 153 8 0 chr3 131951496 131951661 -27648122 + (TATATG)n Simple_repeat Simple_repeat 1 166 0 6 1591 207 0 0 0 chr3 131952026 131952049 -27647734 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 6 1591 984 73 7 14 chr3 131952060 131952199 -27647584 - B1_Mm SINE Alu 0 147 10 6 1591 622 328 55 30 chr3 131952746 131952982 -27646801 - MTEa LTR MaLR -15 364 123 6 1591 2291 293 39 17 chr3 131953073 131953788 -27645995 - ORR1E-int LTR MaLR 0 1580 850 6 1591 2916 161 85 45 chr3 131953794 131954359 -27645424 - RMER19C LTR ERVK 0 611 19 6 1591 180 0 0 0 chr3 131954359 131954379 -27645404 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 6 1591 2916 161 85 45 chr3 131954379 131954391 -27645392 - RMER19C LTR ERVK -593 18 11 6 1591 459 153 0 0 chr3 131954392 131954464 -27645319 - RLTR20D LTR ERVK -496 72 1 6 1591 264 318 12 12 chr3 131954528 131954614 -27645169 - ORR1E-int LTR MaLR -1493 87 2 6 1591 287 282 43 101 chr3 131954633 131954771 -27645012 - ORR1E LTR MaLR -15 344 215 6 1591 21 0 0 0 chr3 131954963 131954984 -27644799 + AT_rich Low_complexity Low_complexity 1 21 0 6 1591 2303 57 13 0 chr3 131955472 131955773 -27644010 - L1Md_F2 LINE L1 -1 6581 6277 6 1591 500 250 9 18 chr3 131956532 131956646 -27643137 - PB1D9 SINE Alu -6 114 2 6 1591 3067 50 10 0 chr3 131957497 131957881 -27641902 - RLTR10 LTR ERVK -2 388 1 6 1591 664 277 51 20 chr3 131957995 131958290 -27641493 - L1M4c LINE L1 -1426 4950 4647 6 1591 328 298 41 6 chr3 131958269 131958438 -27641345 - L1M4c LINE L1 -4285 2099 1925 6 1591 599 311 58 27 chr3 131958459 131958753 -27641030 - L1M4c LINE L1 -4805 1579 1277 6 1591 6770 34 0 0 chr3 131959039 131959845 -27639938 - L1Md_F3 LINE L1 -1 6583 5778 6 1591 1601 6 0 0 chr3 131959854 131960033 -27639750 + L1Md_F3 LINE L1 5589 5767 -817 6 1591 21 0 0 0 chr3 131960381 131960402 -27639381 + AT_rich Low_complexity Low_complexity 1 21 0 6 1591 180 0 0 0 chr3 131960682 131960702 -27639081 + (TTAA)n Simple_repeat Simple_repeat 3 22 0 6 1591 3698 93 155 2 chr3 131960702 131961282 -27638501 - Lx3_Mus LINE L1 -18 6991 6323 6 1591 46 19 0 0 chr3 131961408 131961461 -27638322 + AT_rich Low_complexity Low_complexity 1 53 0 6 1591 1265 240 108 8 chr3 131961687 131962057 -27637726 + MTD LTR MaLR 13 419 0 6 1591 33317 72 5 16 chr3 131962691 131967875 -27631908 + L1Md_F2 LINE L1 465 5586 -297 6 1591 7910 49 9 1 chr3 131967875 131968908 -27630875 + L1Md_F2 LINE L1 5587 6582 0 6 1591 3443 171 72 18 chr3 131969050 131970140 -27629643 + L1_Mur3 LINE L1 552 1720 -4160 6 1591 265 280 107 0 chr3 131970280 131970355 -27629428 + PB1D10 SINE Alu 2 84 -33 6 1591 1050 181 27 44 chr3 131970428 131970653 -27629130 + URR1B DNA MER1_type 1 221 -4 6 1591 569 185 148 12 chr3 131970813 131970974 -27628809 + B3 SINE B2 1 167 -26 6 1591 766 214 86 6 chr3 131971005 131971179 -27628604 + B3 SINE B2 29 216 0 6 1591 7962 168 31 44 chr3 131971197 131972917 -27626866 + L1_Mur3 LINE L1 1707 3404 -2476 6 1591 1001 122 42 55 chr3 131972918 131973083 -27626700 + B2_Mm2 SINE B2 2 164 -31 6 1591 1963 142 114 14 chr3 131973432 131973790 -27625993 + ORR1B1 LTR MaLR 1 394 0 6 1591 434 266 15 15 chr3 131974373 131974503 -27625280 + Lx7 LINE L1 6094 6223 -1473 6 1591 2214 250 66 20 chr3 131974515 131975148 -27624635 + Lx7 LINE L1 6637 7298 -398 6 1591 213 233 13 40 chr3 131975163 131975239 -27624544 + T-rich Low_complexity Low_complexity 2 75 0 6 1591 22 35 0 0 chr3 131975472 131975501 -27624282 + AT_rich Low_complexity Low_complexity 1 29 0 6 1591 385 335 26 6 chr3 131975574 131975730 -27624053 - MIR SINE MIR -22 240 82 6 1591 243 364 80 32 chr3 131976025 131976150 -27623633 + RSINE1 SINE B4 3 133 -32 6 1591 25 0 0 0 chr3 131976168 131976193 -27623590 + AT_rich Low_complexity Low_complexity 1 25 0 6 1591 2627 86 3 0 chr3 131977614 131977973 -27621810 + Lx3_Mus LINE L1 6650 7009 0 6 1591 921 305 106 0 chr3 131978364 131978705 -27621078 - MTE2b LTR MaLR -2 377 1 6 1591 1131 82 0 0 chr3 131978841 131978987 -27620796 + B1_Mus2 SINE Alu 2 147 0 6 1591 1790 204 41 34 chr3 131979048 131979464 -27620319 + MTD LTR MaLR 1 419 0 6 1591 4780 140 36 13 chr3 131980045 131980883 -27618900 + L1_Mur2 LINE L1 4223 5079 -798 6 1591 405 207 25 17 chr3 131980898 131981016 -27618767 + Lx2B LINE L1 6879 6997 -3 6 1591 4021 188 76 7 chr3 131981016 131981827 -27617956 + Lx5 LINE L1 5788 6654 -396 6 1591 290 321 100 21 chr3 131982173 131982504 -27617279 + Lx7 LINE L1 5831 6187 -1509 6 1591 2136 108 3 0 chr3 131982543 131982857 -27616926 + ORR1A2 LTR MaLR 10 324 -3 6 1591 906 310 22 16 chr3 131982882 131983200 -27616583 + Lx8 LINE L1 6224 6543 -930 6 1591 546 315 144 17 chr3 131983192 131983483 -27616300 - Lx8 LINE L1 -225 7248 6921 6 1591 287 303 0 0 chr3 131985260 131985336 -27614447 - L1M2 LINE L1 -3411 2732 2657 6 1591 333 252 162 19 chr3 131985348 131985453 -27614330 + MTD LTR MaLR 1 120 -299 6 1591 1342 344 26 10 chr3 131985453 131986035 -27613748 - Lx8 LINE L1 -566 6907 6317 6 1591 806 69 0 71 chr3 131986070 131986211 -27613572 - Lx LINE L1 -7 6647 6517 6 1591 526 325 42 12 chr3 131986311 131986476 -27613307 + B3A SINE B2 29 198 0 6 1591 705 127 0 0 chr3 131986744 131986878 -27612905 + (GA)n Simple_repeat Simple_repeat 1 134 0 6 1591 277 131 0 21 chr3 131987690 131987737 -27612046 - L1_Mur2 LINE L1 -280 5597 5552 6 1591 1468 108 78 131 chr3 131987791 131988004 -27611779 - L1_Mur2 LINE L1 -321 5556 5321 6 1591 3251 149 18 2 chr3 131988004 131988563 -27611220 + Lx3B LINE L1 6403 6970 -3 6 1591 1468 108 78 131 chr3 131988563 131988669 -27611114 - L1_Mur2 LINE L1 -557 5320 5254 6 1591 4504 119 12 7 chr3 131988679 131989363 -27610420 + Lx4A LINE L1 5609 6295 -763 6 198 1195 181 6 158 chr3 131989350 131989711 -27610072 + Lx4A LINE L1 6749 7054 -4 6 1592 2531 200 78 22 chr3 131990601 131991180 -27608603 + RMER19C LTR ERVK 1 611 0 6 1592 438 281 44 44 chr3 131991658 131991818 -27607965 + RSINE1 SINE B4 3 162 -3 6 1592 761 208 6 0 chr3 131992258 131992436 -27607347 + (TA)n Simple_repeat Simple_repeat 2 180 0 6 1592 196 301 40 14 chr3 131992771 131992845 -27606938 - MIRc SINE MIR -177 91 16 6 1592 1870 182 42 8 chr3 131993024 131993379 -27606404 + MTD LTR MaLR 45 411 -8 6 1592 226 250 193 9 chr3 131995490 131995599 -27604184 + L1MC3 LINE L1 7637 7765 -20 7 1592 1176 73 17 0 chr3 131995789 131995966 -27603817 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 7 1592 1096 95 0 0 chr3 131996146 131996293 -27603490 - B1_Mus1 SINE Alu 0 148 2 7 1592 277 429 65 5 chr3 131996846 131997031 -27602752 + MLT1K LTR MaLR 344 539 -56 7 1592 347 301 215 16 chr3 131997333 131997640 -27602143 - L2a LINE L2 -4 3422 3055 7 1592 280 336 43 8 chr3 131997754 131997871 -27601912 - L2a LINE L2 -819 2600 2480 7 1592 375 291 56 60 chr3 131997989 131998205 -27601578 + L1MC3 LINE L1 7132 7346 -439 7 1592 278 327 10 10 chr3 131998260 131998362 -27601421 - PB1D9 SINE Alu -18 102 1 7 1592 1051 282 66 3 chr3 131998434 131998811 -27600972 + L1MC3 LINE L1 7375 7775 -10 7 1592 410 167 32 24 chr3 131998981 131999235 -27600548 + (TCTA)n Simple_repeat Simple_repeat 1 256 0 7 1592 332 343 69 25 chr3 131999235 131999438 -27600345 - MLT1D LTR MaLR -263 242 31 7 1592 292 329 76 13 chr3 131999513 131999670 -27600113 - L2a LINE L2 -1387 2032 1866 7 1592 277 315 63 57 chr3 131999680 131999855 -27599928 - MLT2D LTR ERVL -10 550 375 7 1592 258 349 24 0 chr3 131999874 132000000 -27599783 - L2a LINE L2 -2406 1013 885 7 1592 534 314 87 0 chr3 132000095 132000267 -27599516 + B3 SINE B2 30 216 0 1 1592 201 74 0 0 chr3 132000272 132000299 -27599484 + (CAGA)n Simple_repeat Simple_repeat 4 30 0 2 1592 365 343 114 17 chr3 132000453 132000690 -27599093 - MER90a LTR ERV1 -174 440 181 3 1592 220 231 30 30 chr3 132000747 132000814 -27598969 + (TATG)n Simple_repeat Simple_repeat 1 67 0 4 1592 188 333 26 43 chr3 132001028 132001144 -27598639 - L2 LINE L2 -2893 526 413 5 1592 281 310 149 23 chr3 132001730 132001905 -27597878 + MIR SINE MIR 36 232 -30 6 1592 1396 210 51 66 chr3 132002354 132002580 -27597203 - ORR1B2 LTR MaLR 0 367 152 7 1592 1506 12 0 0 chr3 132002580 132002752 -27597031 + (GGGAGA)n Simple_repeat Simple_repeat 1 172 0 8 1592 1396 210 51 66 chr3 132002752 132002857 -27596926 - ORR1B2 LTR MaLR -216 151 41 7 1592 183 80 0 0 chr3 132002978 132003003 -27596780 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 9 1592 1031 298 59 14 chr3 132003357 132003715 -27596068 + RCHARR1 DNA MER1_type 55 428 -546 1 1592 230 348 62 0 chr3 132003764 132003876 -27595907 + Lx8 LINE L1 7095 7213 -260 1 1592 790 93 28 14 chr3 132003894 132004036 -27595747 - L1_Mus3 LINE L1 -5 6633 6490 1 1592 270 0 0 0 chr3 132004154 132004184 -27595599 + (CA)n Simple_repeat Simple_repeat 1 30 0 1 1592 423 0 0 0 chr3 132004184 132004230 -27595553 + (GA)n Simple_repeat Simple_repeat 2 48 0 1 1592 1242 216 75 70 chr3 132004380 132004809 -27594974 + RCHARR1 DNA MER1_type 479 909 -65 1 1592 1274 189 29 8 chr3 132004837 132005077 -27594706 + RMER19C LTR ERVK 367 611 0 1 1592 444 282 184 11 chr3 132005948 132006127 -27593656 + B3 SINE B2 7 216 0 1 1592 777 51 0 0 chr3 132007254 132007352 -27592431 + (GGA)n Simple_repeat Simple_repeat 3 100 0 1 1592 1305 83 0 0 chr3 132007355 132007535 -27592248 + (GAA)n Simple_repeat Simple_repeat 1 180 0 1 1592 750 198 0 0 chr3 132007694 132007871 -27591912 + (TG)n Simple_repeat Simple_repeat 2 178 0 1 1592 641 266 59 89 chr3 132008368 132008570 -27591213 + B3A SINE B2 1 196 -2 2 1592 748 92 17 0 chr3 132009638 132009757 -27590026 + (TC)n Simple_repeat Simple_repeat 2 122 0 2 1592 9593 84 11 15 chr3 132010134 132012583 -27587200 + Lx3A LINE L1 4524 6966 -15 2 1592 387 0 0 0 chr3 132012583 132012626 -27587157 + (TAAA)n Simple_repeat Simple_repeat 1 43 0 2 1592 1595 320 108 39 chr3 132013130 132014636 -27585147 + Lx9 LINE L1 5851 7460 -184 2 1592 283 160 20 0 chr3 132015375 132015425 -27584358 - 4.5SRNA scRNA scRNA -26 68 18 2 1592 785 182 35 0 chr3 132015572 132015715 -27584068 + B1F SINE Alu 2 149 0 2 1592 591 277 14 0 chr3 132015802 132015950 -27583833 + RSINE1 SINE B4 2 151 -14 2 1592 21 0 0 0 chr3 132015956 132015977 -27583806 + AT_rich Low_complexity Low_complexity 1 21 0 2 1592 434 266 9 18 chr3 132016085 132016196 -27583587 - PB1D10 SINE Alu -7 110 1 2 1592 22 0 0 0 chr3 132016849 132016871 -27582912 + AT_rich Low_complexity Low_complexity 1 22 0 3 1592 375 301 31 27 chr3 132017001 132017226 -27582557 + L1ME1 LINE L1 3351 3576 -2570 3 1592 6181 131 33 12 chr3 132017397 132018400 -27581383 + Lx2 LINE L1 5974 6997 0 3 1592 23 0 0 0 chr3 132018563 132018586 -27581197 + AT_rich Low_complexity Low_complexity 1 23 0 3 1592 284 314 29 0 chr3 132018650 132018752 -27581031 + PB1D10 SINE Alu 3 107 -10 3 1592 324 304 105 10 chr3 132018828 132019037 -27580746 + L1ME1 LINE L1 4138 4366 -1780 3 1592 5075 65 51 15 chr3 132019178 132019994 -27579789 - Lx3_Mus LINE L1 -668 6341 5522 3 1592 4760 95 7 1 chr3 132019994 132020671 -27579112 + Lx3_Mus LINE L1 6329 7009 0 3 1592 180 0 0 0 chr3 132020680 132020700 -27579083 + (TAAAA)n Simple_repeat Simple_repeat 2 21 0 3 1592 216 0 0 0 chr3 132021180 132021204 -27578579 + (CG)n Simple_repeat Simple_repeat 1 24 0 3 1592 432 55 0 0 chr3 132021204 132021258 -27578525 + (TG)n Simple_repeat Simple_repeat 1 55 0 3 1592 1009 265 141 14 chr3 132021375 132021703 -27578080 + Lx8 LINE L1 6976 7340 -133 3 1592 934 29 45 45 chr3 132021703 132021882 -27577901 + (CAGAGA)n Simple_repeat Simple_repeat 2 180 0 4 1592 1009 265 141 14 chr3 132021882 132021993 -27577790 + Lx8 LINE L1 7341 7470 -3 3 1592 834 245 0 0 chr3 132022233 132022384 -27577399 + B3A SINE B2 1 151 -47 4 1592 276 100 0 0 chr3 132022395 132022435 -27577348 + (CA)n Simple_repeat Simple_repeat 2 41 0 4 1592 324 354 29 17 chr3 132022461 132022702 -27577081 + L1ME1 LINE L1 5466 5709 -470 3 1592 337 359 0 0 chr3 132022956 132023084 -27576699 + L1ME1 LINE L1 6015 6142 -37 3 1592 189 342 14 0 chr3 132026271 132026326 -27573457 - MIRb SINE MIR -135 133 78 4 1592 185 329 81 12 chr3 132026326 132026412 -27573371 - MER5A DNA MER1_type -2 187 96 4 1592 198 0 0 0 chr3 132026416 132026438 -27573345 + (CCCTAA)n Simple_repeat Simple_repeat 2 23 0 4 1592 214 362 14 44 chr3 132026492 132026634 -27573149 - L2c LINE L2 -181 3194 3061 4 1592 434 268 65 7 chr3 132027772 132027911 -27571872 + B1_Mur4 SINE Alu 3 149 -1 4 1592 242 318 47 0 chr3 132028479 132028586 -27571197 + L1MC3 LINE L1 6037 6148 -1637 4 1592 1579 48 0 0 chr3 132028749 132028937 -27570846 + B2_Mm1t SINE B2 2 189 -4 4 1592 250 206 29 29 chr3 132029022 132029092 -27570691 + L1MC3 LINE L1 6415 6484 -1301 4 1592 401 296 0 0 chr3 132029240 132029328 -27570455 + B1_Mur1 SINE Alu 40 127 -22 5 1592 240 302 0 0 chr3 132029332 132029385 -27570398 + B1F SINE Alu 74 126 -23 5 1592 238 329 0 12 chr3 132029355 132029435 -27570348 + ID_B1 SINE B4 146 224 0 5 1592 845 153 23 0 chr3 132029435 132029611 -27570172 + GA-rich Low_complexity Low_complexity 1 180 0 5 1592 1691 187 57 9 chr3 132030190 132030540 -27569243 - ORR1B2 LTR MaLR 0 367 1 5 1592 3786 180 28 7 chr3 132033585 132034302 -27565481 - Lx3C LINE L1 -7 6969 6238 5 1592 390 297 11 0 chr3 132034660 132034751 -27565032 - PB1D10 SINE Alu -21 96 5 5 1592 936 139 0 0 chr3 132034763 132034935 -27564848 + (TG)n Simple_repeat Simple_repeat 1 172 0 5 1592 306 0 0 0 chr3 132034935 132034968 -27564815 + (GA)n Simple_repeat Simple_repeat 1 34 0 5 1592 236 325 62 54 chr3 132036117 132036247 -27563536 + B3A SINE B2 2 132 -66 5 1592 504 68 0 0 chr3 132036265 132036338 -27563445 + (GA)n Simple_repeat Simple_repeat 2 74 0 6 1592 28 29 0 0 chr3 132036446 132036481 -27563302 + AT_rich Low_complexity Low_complexity 1 35 0 6 1592 414 261 97 14 chr3 132036599 132036743 -27563040 + L1MEc LINE L1 2199 2354 -4046 6 1592 240 230 24 98 chr3 132037501 132037583 -27562200 - ORR1E LTR MaLR -186 173 98 6 1592 2188 124 9 0 chr3 132037824 132038139 -27561644 + ORR1A3 LTR MaLR 1 318 -8 6 1592 410 254 171 0 chr3 132039749 132039954 -27559829 + L1MB2 LINE L1 5762 6001 -170 6 1592 180 0 0 0 chr3 132039975 132039995 -27559788 + (TTG)n Simple_repeat Simple_repeat 2 21 0 6 1592 382 326 71 74 chr3 132040079 132040339 -27559444 - L1M5 LINE L1 -1577 4569 4303 6 1592 2903 65 47 0 chr3 132040339 132040721 -27559062 - MTB LTR MaLR 0 400 1 6 1592 382 326 71 74 chr3 132040721 132040811 -27558972 - L1M5 LINE L1 -1844 4302 4220 6 1592 260 189 149 0 chr3 132040860 132040934 -27558849 - Lx9 LINE L1 -6 7638 7554 6 1592 423 0 0 0 chr3 132040940 132040987 -27558796 + (CA)n Simple_repeat Simple_repeat 2 48 0 7 1592 941 267 44 44 chr3 132040987 132041351 -27558432 - Lx9 LINE L1 -167 7477 7114 6 1592 2356 63 28 21 chr3 132043279 132043604 -27556179 + IAPLTR2b LTR ERVK 1 327 0 7 1592 192 40 0 0 chr3 132044165 132044190 -27555593 + (CA)n Simple_repeat Simple_repeat 2 26 0 7 1592 724 21 21 0 chr3 132044206 132044300 -27555483 + (TAGA)n Simple_repeat Simple_repeat 1 96 0 7 1592 23 54 0 0 chr3 132045133 132045170 -27554613 + AT_rich Low_complexity Low_complexity 1 37 0 7 1592 482 0 17 0 chr3 132046073 132046131 -27553652 + (CAAAA)n Simple_repeat Simple_repeat 2 60 0 7 1592 267 294 142 103 chr3 132046139 132046469 -27553314 + Lx8 LINE L1 7131 7473 0 7 1592 24 77 0 0 chr3 132047362 132047414 -27552369 + AT_rich Low_complexity Low_complexity 1 52 0 7 1592 6818 76 31 2 chr3 132047414 132048433 -27551350 - L1Md_F2 LINE L1 0 6582 5535 7 1592 5850 70 0 70 chr3 132048491 132049412 -27550371 + L1_Mm LINE L1 4324 5180 -703 7 1592 1571 195 89 0 chr3 132049747 132050096 -27549687 - ORR1C2 LTR MaLR -4 380 1 8 1592 237 289 100 0 chr3 132050877 132050967 -27548816 - Lx7 LINE L1 -362 7334 7236 8 1592 1190 219 111 11 chr3 132050970 132051321 -27548462 + Lx9 LINE L1 7106 7491 -153 8 1592 250 235 23 34 chr3 132051336 132051424 -27548359 + Lx9 LINE L1 7552 7638 -6 8 1592 306 0 0 0 chr3 132051435 132051469 -27548314 + (TATG)n Simple_repeat Simple_repeat 2 35 0 8 1592 1143 71 0 0 chr3 132051469 132051609 -27548174 - B1_Mus1 SINE Alu -8 140 1 8 1592 956 108 0 7 chr3 132051819 132051968 -27547815 + (GAA)n Simple_repeat Simple_repeat 3 150 0 8 1592 299 258 28 64 chr3 132051981 132052122 -27547661 + L1_Mur3 LINE L1 4655 4790 -1090 8 1592 696 297 124 21 chr3 132052124 132052496 -27547287 + Lx8 LINE L1 6742 7151 -322 8 1592 21 57 0 0 chr3 132052770 132052805 -27546978 + AT_rich Low_complexity Low_complexity 1 35 0 8 1592 938 261 91 11 chr3 132052805 132053177 -27546606 + L1_Mur3 LINE L1 4777 5178 -702 8 1592 284 207 78 55 chr3 132053757 132053885 -27545898 + L1MC LINE L1 3166 3296 -2850 8 1592 249 302 41 49 chr3 132053902 132054024 -27545759 + B3A SINE B2 2 122 -76 9 1592 452 296 156 44 chr3 132053920 132054125 -27545658 + B4A SINE B4 19 246 -46 9 1592 459 0 0 0 chr3 132054143 132054194 -27545589 + (GA)n Simple_repeat Simple_repeat 1 51 0 9 1592 806 0 11 0 chr3 132054194 132054288 -27545495 + (GAA)n Simple_repeat Simple_repeat 3 97 0 9 1592 559 238 0 0 chr3 132054389 132054494 -27545289 + B1F2 SINE Alu 28 132 -17 9 1592 327 105 0 0 chr3 132054504 132054561 -27545222 + (CAGAGA)n Simple_repeat Simple_repeat 3 59 0 9 1592 201 217 48 32 chr3 132054571 132054633 -27545150 + GA-rich Low_complexity Low_complexity 2 64 0 9 1592 289 318 26 53 chr3 132054641 132054754 -27545029 + PB1D10 SINE Alu 2 111 -6 9 1592 198 0 0 0 chr3 132054758 132054780 -27545003 + (TTTTG)n Simple_repeat Simple_repeat 4 25 0 9 1592 976 16 16 0 chr3 132054783 132054905 -27544878 + (TG)n Simple_repeat Simple_repeat 2 125 0 9 1592 21 0 0 0 chr3 132055153 132055174 -27544609 + AT_rich Low_complexity Low_complexity 1 21 0 1 1592 758 311 197 37 chr3 132055185 132055637 -27544146 + L1M5 LINE L1 4416 4940 -1206 1 1592 180 0 0 0 chr3 132055637 132055657 -27544126 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 1 1592 758 314 121 25 chr3 132055657 132055944 -27543839 + L1M5 LINE L1 4941 5272 -874 1 1592 252 299 199 20 chr3 132055955 132056443 -27543340 + L1M5 LINE L1 5316 5890 -289 1 1592 849 49 0 8 chr3 132056629 132056752 -27543031 - L1Md_F2 LINE L1 -1 6581 6460 1 1592 259 360 67 34 chr3 132058298 132058476 -27541307 + MLT1B-int LTR MaLR 253 436 -951 1 1592 285 250 0 0 chr3 132058486 132058550 -27541233 - Lx5 LINE L1 -820 6230 6167 1 1592 546 264 28 84 chr3 132058916 132059094 -27540689 - RLTR9B LTR ERVK 0 437 270 1 1592 779 133 0 26 chr3 132059198 132059314 -27540469 + B1_Mur3 SINE Alu 26 138 -11 1 1592 207 0 0 0 chr3 132059314 132059337 -27540446 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 1 1592 666 100 0 0 chr3 132059404 132059504 -27540279 + (TG)n Simple_repeat Simple_repeat 2 101 0 1 1592 1001 242 17 55 chr3 132059651 132059944 -27539839 + MLT1B LTR MaLR 93 374 -16 1 1592 533 248 53 0 chr3 132060566 132060694 -27539089 + B1_Mus2 SINE Alu 1 135 -12 1 1592 201 74 0 0 chr3 132060694 132060721 -27539062 + (TTAA)n Simple_repeat Simple_repeat 3 29 0 1 1592 1117 63 7 0 chr3 132060886 132061028 -27538755 + B1_Mus2 SINE Alu 5 147 0 1 1592 216 97 0 0 chr3 132061028 132061059 -27538724 + (A)n Simple_repeat Simple_repeat 1 31 0 1 1592 235 345 148 47 chr3 132061722 132061884 -27537899 - MLT1B LTR MaLR -4 361 176 1 1592 189 0 0 0 chr3 132061884 132061905 -27537878 + (TG)n Simple_repeat Simple_repeat 1 21 0 1 1592 273 229 193 27 chr3 132061905 132062060 -27537723 - MLT1B LTR MaLR -190 175 3 1 1592 469 291 81 74 chr3 132062857 132063128 -27536655 + B4A SINE B4 2 274 -18 1 1592 336 138 0 0 chr3 132063144 132063209 -27536574 + (CA)n Simple_repeat Simple_repeat 1 65 0 1 1592 346 348 14 14 chr3 132064344 132064487 -27535296 + MIR SINE MIR 116 258 -4 1 1592 583 124 50 0 chr3 132064636 132064757 -27535026 - Lx9 LINE L1 -1 7643 7517 1 1592 562 332 81 44 chr3 132064757 132065236 -27534547 + RLTR11A2 LTR ERVK 1 497 -30 1 1592 911 201 71 24 chr3 132065300 132065555 -27534228 - Lx9 LINE L1 -157 7487 7221 1 1592 545 314 134 0 chr3 132066970 132067142 -27532641 + MER21B LTR ERV1 138 332 -531 1 1592 855 245 109 72 chr3 132067212 132067333 -27532450 + ORR1B1 LTR MaLR 45 151 -243 1 1592 195 129 0 0 chr3 132067333 132067364 -27532419 + (TAGA)n Simple_repeat Simple_repeat 2 32 0 1 1592 189 0 0 0 chr3 132067365 132067386 -27532397 + (ATTG)n Simple_repeat Simple_repeat 2 22 0 1 1592 855 232 121 13 chr3 132067386 132067568 -27532215 + ORR1B1 LTR MaLR 152 361 -33 1 1592 1269 223 26 43 chr3 132067654 132068005 -27531778 + Lx2B LINE L1 6648 6992 -8 1 1592 801 272 70 29 chr3 132068157 132068430 -27531353 + MLT1C LTR MaLR 184 467 0 1 1592 191 285 208 24 chr3 132068605 132068822 -27530961 + MIR3 SINE MIR 1 257 -11 1 1592 37306 60 1 23 chr3 132068955 132075839 -27523944 - L1Md_T LINE L1 0 6582 99 1 1592 188 234 239 45 chr3 132076101 132076168 -27523615 - MIR3 SINE MIR -43 165 86 1 1592 207 354 50 30 chr3 132076168 132076267 -27523516 + L2b LINE L2 3261 3361 -14 1 1592 3767 164 49 50 chr3 132076556 132077356 -27522427 + Lx3C LINE L1 6167 6965 -11 1 1592 26 0 0 0 chr3 132077356 132077382 -27522401 + AT_rich Low_complexity Low_complexity 1 26 0 1 1592 1167 75 0 0 chr3 132077486 132077632 -27522151 + B1_Mm SINE Alu 2 147 0 1 1592 21 0 0 0 chr3 132077632 132077653 -27522130 + AT_rich Low_complexity Low_complexity 1 21 0 1 1592 378 0 0 0 chr3 132077953 132077995 -27521788 + (TAGA)n Simple_repeat Simple_repeat 1 42 0 1 1592 23 0 0 0 chr3 132077995 132078018 -27521765 + AT_rich Low_complexity Low_complexity 1 23 0 1 1592 360 168 101 0 chr3 132078324 132078508 -27521275 - Lx9 LINE L1 -4 7640 7405 1 1592 243 0 0 0 chr3 132079176 132079203 -27520580 + (T)n Simple_repeat Simple_repeat 1 27 0 1 1592 28 0 0 0 chr3 132079539 132079567 -27520216 + AT_rich Low_complexity Low_complexity 1 28 0 1 1592 270 0 0 0 chr3 132080086 132080116 -27519667 + (TG)n Simple_repeat Simple_repeat 2 31 0 1 1592 206 172 30 30 chr3 132080118 132080184 -27519599 + (TATAA)n Simple_repeat Simple_repeat 4 69 0 1 1592 216 97 0 0 chr3 132080197 132080228 -27519555 + (CA)n Simple_repeat Simple_repeat 1 31 0 1 1592 486 287 96 0 chr3 132080310 132080446 -27519337 + B3A SINE B2 2 150 -48 1 1592 627 39 0 0 chr3 132080449 132080527 -27519256 + (CA)n Simple_repeat Simple_repeat 2 79 0 1 1592 23 54 0 0 chr3 132080529 132080566 -27519217 + AT_rich Low_complexity Low_complexity 1 37 0 1 1592 1177 131 66 0 chr3 132081940 132082138 -27517645 - Lx2 LINE L1 -10 6987 6777 1 1592 592 102 133 0 chr3 132082140 132082238 -27517545 - Lx2 LINE L1 -354 6643 6533 1 1592 524 295 168 58 chr3 132082987 132083380 -27516403 + MLT1K LTR MaLR 151 586 -9 1 1592 340 95 11 45 chr3 132083662 132083750 -27516033 + (TAAA)n Simple_repeat Simple_repeat 4 88 0 1 1592 1158 60 0 0 chr3 132084830 132084981 -27514802 + (TGG)n Simple_repeat Simple_repeat 2 152 0 1 1592 465 323 25 19 chr3 132085664 132085825 -27513958 + RSINE1 SINE B4 2 163 -2 1 1592 653 289 0 44 chr3 132086428 132086631 -27513152 - B3A SINE B2 -4 194 1 1 1592 236 333 98 16 chr3 132087356 132087478 -27512305 - MIRc SINE MIR -128 140 9 1 1592 339 25 0 0 chr3 132088201 132088241 -27511542 + (CA)n Simple_repeat Simple_repeat 2 41 0 1 1592 333 0 0 0 chr3 132088797 132088834 -27510949 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 1592 486 0 0 0 chr3 132088834 132088887 -27510896 + (GA)n Simple_repeat Simple_repeat 2 55 0 1 1592 225 0 0 0 chr3 132090419 132090444 -27509339 + (CAG)n Simple_repeat Simple_repeat 2 26 0 1 1592 534 212 26 9 chr3 132090683 132090797 -27508986 + B1F SINE Alu 34 149 0 1 1592 848 212 20 31 chr3 132091575 132091770 -27508013 + B3A SINE B2 2 194 -4 1 1592 422 193 14 21 chr3 132091905 132091999 -27507784 - B2_Mm2 SINE B2 -87 111 17 1 1592 917 129 13 20 chr3 132091971 132092121 -27507662 + ORR1A2-int LTR MaLR 1815 1963 0 1 1592 1764 117 17 59 chr3 132092121 132092411 -27507372 + ORR1A2 LTR MaLR 1 278 -49 1 1592 861 269 73 33 chr3 132092835 132093261 -27506522 - Lx9 LINE L1 -2 7642 7200 1 1592 1556 260 39 30 chr3 132093256 132093724 -27506059 + Lx9 LINE L1 6713 7184 -460 1 1592 755 306 36 11 chr3 132094218 132094499 -27505284 + B4 SINE B4 1 288 -4 1 1592 311 345 74 0 chr3 132094522 132094670 -27505113 - MLT2C2 LTR ERVL -210 254 96 1 1592 204 40 0 0 chr3 132094671 132094696 -27505087 + (CAAA)n Simple_repeat Simple_repeat 3 27 0 1 1592 856 260 81 48 chr3 132094784 132095055 -27504728 - B4A SINE B4 -12 280 1 1 1592 21 0 0 0 chr3 132095055 132095076 -27504707 + AT_rich Low_complexity Low_complexity 1 21 0 1 1592 23 0 0 0 chr3 132095474 132095497 -27504286 + AT_rich Low_complexity Low_complexity 1 23 0 1 1592 336 289 77 157 chr3 132096176 132096553 -27503230 - ORR1D2 LTR MaLR 0 370 24 1 1592 411 319 80 46 chr3 132097903 132098166 -27501617 + LFSINE_Vert SINE SINE 145 416 -43 1 1592 710 360 69 33 chr3 132100207 132100598 -27499185 - MLT1A1 LTR MaLR 0 408 4 1 1592 675 171 222 6 chr3 132103646 132103817 -27495966 + URR1B DNA MER1_type 7 214 -11 1 1592 555 258 56 67 chr3 132105573 132105768 -27494015 + B3A SINE B2 1 193 -5 1 1592 29 47 0 0 chr3 132106450 132106493 -27493290 + AT_rich Low_complexity Low_complexity 1 43 0 1 1592 518 261 119 27 chr3 132107246 132107431 -27492352 - B3 SINE B2 -1 215 14 1 1592 676 185 13 0 chr3 132107546 132107703 -27492080 + (TA)n Simple_repeat Simple_repeat 1 159 0 1 1592 192 322 14 136 chr3 132109668 132109808 -27489975 + L2c LINE L2 3247 3369 -18 1 1592 219 328 16 0 chr3 132110470 132110531 -27489252 + ID4_ SINE ID 3 64 -19 1 1592 465 314 86 83 chr3 132110611 132110810 -27488973 + B4A SINE B4 5 190 -102 1 1592 1680 189 42 40 chr3 132110810 132111190 -27488593 - ORR1C2 LTR MaLR -3 381 1 1 1592 465 314 86 83 chr3 132111190 132111268 -27488515 + B4A SINE B4 191 283 -9 1 1592 7506 59 11 11 chr3 132111428 132113057 -27486726 - L1Md_F2 LINE L1 0 6582 4955 1 1592 299 0 0 0 chr3 132113053 132113087 -27486696 - L1Md_F2 LINE L1 -1516 4367 4334 1 1592 9183 56 10 3 chr3 132113086 132114278 -27485505 + L1_Mm LINE L1 3325 4524 -1359 1 1592 490 318 108 0 chr3 132114801 132114996 -27484787 + B3 SINE B2 1 216 0 1 1592 249 191 64 0 chr3 132115460 132115507 -27484276 + ID4_ SINE ID 31 80 -3 1 1592 280 328 132 11 chr3 132116047 132116229 -27483554 - MIR SINE MIR -7 255 52 1 1592 300 291 81 19 chr3 132116387 132116548 -27483235 - MamRep1161 DNA TcMar -690 267 97 1 1592 205 177 25 0 chr3 132116747 132116826 -27482957 + (TA)n Simple_repeat Simple_repeat 1 81 0 1 1592 1242 250 69 29 chr3 132116944 132117290 -27482493 + MTE2a LTR MaLR 18 377 -2 1 1592 332 133 0 16 chr3 132117389 132117450 -27482333 + (GGA)n Simple_repeat Simple_repeat 1 60 0 1 1592 824 69 9 0 chr3 132117498 132117614 -27482169 + (AGGGGG)n Simple_repeat Simple_repeat 3 119 0 1 1592 1774 165 60 25 chr3 132117792 132118159 -27481624 - Lx4B LINE L1 -3 7055 6676 1 1592 794 312 73 33 chr3 132118552 132118824 -27480959 - B4A SINE B4 -9 283 1 1 1592 410 234 8 75 chr3 132118875 132119009 -27480774 - L1_Rod LINE L1 -1925 3922 3798 1 1592 202 250 26 0 chr3 132119009 132119085 -27480698 + (TAAA)n Simple_repeat Simple_repeat 3 80 0 1 1592 543 303 88 42 chr3 132119473 132119609 -27480174 - L1MC1 LINE L1 -106 6227 6072 1 1592 3455 20 2 0 chr3 132119609 132120004 -27479779 - MTA_Mm LTR MaLR 0 396 1 1 1592 543 303 88 42 chr3 132120004 132120198 -27479585 - L1MC1 LINE L1 -262 6071 5882 1 1593 950 216 67 165 chr3 132121188 132121424 -27478359 - MTE2a LTR MaLR -9 370 153 1 1593 3344 30 5 0 chr3 132121424 132121817 -27477966 + MTA_Mm LTR MaLR 1 395 -1 1 1593 950 216 67 165 chr3 132121817 132121985 -27477798 - MTE2a LTR MaLR -227 152 6 1 1593 347 337 100 15 chr3 132122163 132122422 -27477361 + L1M2c LINE L1 1758 2038 -5130 1 1593 537 287 106 46 chr3 132122509 132123459 -27476324 + L1M2c LINE L1 2176 3208 -3960 1 1593 1851 159 96 11 chr3 132123462 132123825 -27475958 - ORR1B1 LTR MaLR 0 394 1 2 1593 22 35 0 0 chr3 132123915 132123944 -27475839 + AT_rich Low_complexity Low_complexity 1 29 0 2 1593 550 354 29 12 chr3 132123974 132124214 -27475569 + B4A SINE B4 42 285 -7 2 1593 582 54 0 0 chr3 132124217 132124291 -27475492 + (CA)n Simple_repeat Simple_repeat 1 74 0 2 1593 192 152 0 0 chr3 132124312 132124345 -27475438 + (CAA)n Simple_repeat Simple_repeat 1 33 0 2 1593 324 196 122 10 chr3 132124351 132124449 -27475334 + L1M2c LINE L1 3345 3453 -3711 1 1593 314 278 79 0 chr3 132124449 132124575 -27475208 + L1M2c LINE L1 3403 3538 -3626 1 1593 241 290 0 0 chr3 132124619 132124688 -27475095 + L1_Mur3 LINE L1 2549 2617 -3263 2 1593 579 255 45 7 chr3 132124731 132124878 -27474905 - MTD-int LTR MaLR -1087 171 19 2 1593 1288 247 95 21 chr3 132124878 132125245 -27474538 - MTD LTR MaLR 0 419 21 2 1593 279 0 0 0 chr3 132125245 132125276 -27474507 + (TAAA)n Simple_repeat Simple_repeat 4 34 0 2 1593 1288 247 95 21 chr3 132125276 132125296 -27474487 - MTD LTR MaLR -399 20 3 2 1593 313 229 60 12 chr3 132125308 132125392 -27474391 + L1M2c LINE L1 3790 3877 -3287 1 1593 234 0 0 0 chr3 132126240 132126266 -27473517 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 2 1593 448 304 90 123 chr3 132126808 132127175 -27472608 - L1MEg LINE L1 -1263 4883 4529 2 1593 397 263 93 0 chr3 132127176 132127329 -27472454 - MLT1H2 LTR MaLR -25 524 364 2 1593 294 213 0 0 chr3 132127513 132127574 -27472209 - ID4 SINE ID -15 68 8 2 1593 197 65 0 31 chr3 132127611 132127643 -27472140 + (TTTCC)n Simple_repeat Simple_repeat 1 31 0 2 1593 422 236 101 0 chr3 132127643 132127732 -27472051 - B3 SINE B2 -6 210 113 2 1593 21 36 0 0 chr3 132127732 132127760 -27472023 + AT_rich Low_complexity Low_complexity 1 28 0 2 1593 507 60 0 0 chr3 132127760 132127827 -27471956 + (TG)n Simple_repeat Simple_repeat 2 68 0 2 1593 234 310 112 69 chr3 132129078 132129514 -27470269 - L1MEg LINE L1 -5064 1178 724 2 1593 1430 115 30 229 chr3 132129568 132129975 -27469808 - ORR1A4 LTR MaLR 0 329 4 2 1593 1674 175 58 3 chr3 132131184 132131476 -27468307 - MTC LTR MaLR 0 421 114 2 1593 1467 17 0 0 chr3 132131477 132131653 -27468130 + L1Md_A LINE L1 6407 6582 0 2 1593 204 40 0 0 chr3 132131686 132131711 -27468072 + (A)n Simple_repeat Simple_repeat 1 25 0 2 1593 273 262 0 87 chr3 132131712 132131804 -27467979 - MTC LTR MaLR -322 99 16 2 1593 290 365 0 9 chr3 132131954 132132062 -27467721 - B1F SINE Alu -29 120 14 2 1593 396 0 0 0 chr3 132132414 132132458 -27467325 + (TTA)n Simple_repeat Simple_repeat 3 46 0 2 1593 402 17 69 0 chr3 132133050 132133152 -27466631 + L1Md_F3 LINE L1 6504 6584 0 2 1593 233 247 96 0 chr3 132133419 132133492 -27466291 + L1MCa LINE L1 224 303 -6099 2 1593 643 281 30 25 chr3 132133516 132133713 -27466070 + B3A SINE B2 1 198 0 2 1593 378 304 95 29 chr3 132134115 132134325 -27465458 + RMER20B LTR ERVK 141 364 -263 2 1593 328 269 152 47 chr3 132134525 132134716 -27465067 + L1MCa LINE L1 615 825 -5683 2 1593 213 328 119 0 chr3 132134716 132134783 -27465000 + B4A SINE B4 1 75 -217 2 1593 465 104 0 0 chr3 132134784 132134861 -27464922 + (CA)n Simple_repeat Simple_repeat 2 78 0 2 1593 316 215 12 12 chr3 132134863 132134943 -27464840 + L1MCa LINE L1 1016 1095 -5413 2 1593 322 236 22 86 chr3 132135070 132135209 -27464574 + L1MCa LINE L1 1105 1234 -5274 2 1593 297 347 66 40 chr3 132135221 132135324 -27464459 - Lx9 LINE L1 -28 7445 7337 2 1593 240 35 0 0 chr3 132135324 132135353 -27464430 + (CA)n Simple_repeat Simple_repeat 2 30 0 2 1593 376 251 52 26 chr3 132135353 132135477 -27464306 - Lx9 LINE L1 -184 7460 7341 2 1593 5788 158 59 15 chr3 132135501 132136566 -27463217 + Lx4B LINE L1 5933 7044 -14 2 1593 195 42 0 0 chr3 132136566 132136590 -27463193 + (TTAA)n Simple_repeat Simple_repeat 3 26 0 2 1593 400 246 289 6 chr3 132136686 132136866 -27462917 + Lx8 LINE L1 6875 7105 -368 2 1593 356 238 180 16 chr3 132136939 132137067 -27462716 - ORR1B2 LTR MaLR -218 149 1 2 1593 216 97 0 0 chr3 132137227 132137258 -27462525 + (CA)n Simple_repeat Simple_repeat 2 32 0 2 1593 268 244 0 0 chr3 132137316 132137398 -27462385 + L1MCa LINE L1 1802 1883 -4625 2 1593 614 203 90 0 chr3 132137398 132137531 -27462252 + B1_Mm SINE Alu 1 145 -2 2 1593 180 77 0 0 chr3 132137533 132137559 -27462224 + (CAA)n Simple_repeat Simple_repeat 2 27 0 2 1593 198 103 0 0 chr3 132137607 132137636 -27462147 + (TATG)n Simple_repeat Simple_repeat 1 29 0 2 1593 476 267 77 55 chr3 132137731 132138004 -27461779 + L1MCa LINE L1 2098 2376 -4132 2 1593 247 259 73 65 chr3 132138034 132138158 -27461625 + L1MA9 LINE L1 5889 6013 -299 2 1593 1295 265 88 115 chr3 132138346 132138884 -27460899 + L1MCa LINE L1 2543 3128 -3193 2 1593 659 226 66 11 chr3 132138884 132139067 -27460716 + B3A SINE B2 4 196 -2 2 1593 1295 265 88 115 chr3 132139067 132139593 -27460190 + L1MCa LINE L1 3129 3579 -2742 2 1593 207 100 0 0 chr3 132139598 132139628 -27460155 + (T)n Simple_repeat Simple_repeat 1 30 0 2 1593 1154 68 0 0 chr3 132139628 132139775 -27460008 - B1_Mm SINE Alu 0 147 1 2 1593 1046 260 88 66 chr3 132139851 132140247 -27459536 + MTD LTR MaLR 21 383 -36 2 1593 589 261 72 18 chr3 132140297 132140574 -27459209 + L1MCa LINE L1 3661 3952 -2369 2 1593 24 32 0 0 chr3 132140640 132140671 -27459112 + AT_rich Low_complexity Low_complexity 1 31 0 2 1593 303 260 44 127 chr3 132140677 132140906 -27458877 + L1MCa LINE L1 3958 4167 -2154 2 1593 377 187 0 0 chr3 132140925 132141000 -27458783 + B3A SINE B2 14 88 -110 2 1593 21 0 0 0 chr3 132141067 132141088 -27458695 + AT_rich Low_complexity Low_complexity 1 21 0 2 1593 432 0 0 0 chr3 132141259 132141307 -27458476 + (TG)n Simple_repeat Simple_repeat 1 48 0 2 1593 444 309 39 131 chr3 132141316 132141621 -27458162 - B4 SINE B4 -14 278 2 2 1593 2529 257 91 23 chr3 132142628 132143112 -27456671 + Lx6 LINE L1 6687 7192 -268 2 1593 362 0 62 0 chr3 132143112 132143160 -27456623 + (TTTTG)n Simple_repeat Simple_repeat 2 52 0 2 1593 2529 257 91 23 chr3 132143160 132143400 -27456383 + Lx6 LINE L1 7193 7460 0 2 1593 1695 84 19 42 chr3 132143615 132143850 -27455933 - Lx3_Mus LINE L1 -986 6023 5791 2 1593 568 0 28 0 chr3 132143850 132143922 -27455861 + (TTTTG)n Simple_repeat Simple_repeat 2 75 0 2 1593 1150 58 0 0 chr3 132143922 132144061 -27455722 - B1_Mus1 SINE Alu -9 139 1 2 1593 1695 84 19 42 chr3 132144061 132144086 -27455697 - Lx3_Mus LINE L1 -1219 5790 5769 2 1593 767 50 79 0 chr3 132144085 132144186 -27455597 + L1_Mur1 LINE L1 4465 4573 -1313 2 1593 550 185 10 33 chr3 132144623 132144778 -27455005 + Lx4B LINE L1 6689 6896 -154 2 1593 591 53 0 0 chr3 132144779 132144854 -27454929 + (TTTTC)n Simple_repeat Simple_repeat 3 77 0 2 1593 10194 89 4 16 chr3 132144878 132147118 -27452665 - L1_Mus1 LINE L1 -1 6566 4360 2 1593 219 316 0 0 chr3 132148077 132148134 -27451649 + GA-rich Low_complexity Low_complexity 2 58 0 2 1593 1323 65 0 0 chr3 132148960 132149130 -27450653 - B2_Mm2 SINE B2 -25 170 1 2 1593 246 267 0 16 chr3 132149365 132149426 -27450357 + B3 SINE B2 90 149 -67 2 1593 408 97 0 0 chr3 132149438 132149500 -27450283 + (CA)n Simple_repeat Simple_repeat 2 63 0 2 1593 1818 168 5 79 chr3 132149723 132150164 -27449619 + RMER17C LTR ERVK 3 410 0 2 1593 225 305 34 0 chr3 132150230 132150289 -27449494 - Lx6 LINE L1 -1024 6436 6376 2 1593 276 30 0 0 chr3 132151051 132151084 -27448699 + (TTTG)n Simple_repeat Simple_repeat 1 33 0 2 1593 333 271 171 8 chr3 132151710 132151833 -27447950 + RMER15 LTR ERVL 419 561 -14 2 1593 21 57 0 0 chr3 132151857 132151892 -27447891 + AT_rich Low_complexity Low_complexity 1 35 0 2 1593 1235 267 30 24 chr3 132151966 132152417 -27447366 - Lx5 LINE L1 -574 6886 6455 2 1593 225 0 0 0 chr3 132152694 132152719 -27447064 + (TTTG)n Simple_repeat Simple_repeat 3 27 0 2 1593 438 20 0 0 chr3 132152738 132152789 -27446994 + (TC)n Simple_repeat Simple_repeat 2 52 0 2 1593 232 279 16 16 chr3 132152887 132152949 -27446834 + Lx6 LINE L1 6185 6246 -1214 2 1593 388 292 55 30 chr3 132154059 132154260 -27445523 - HAL1b LINE L1 -711 1298 1093 2 1593 424 329 32 5 chr3 132154309 132154529 -27445254 - HAL1b LINE L1 -723 1286 1061 2 1593 22 0 0 0 chr3 132154852 132154874 -27444909 + AT_rich Low_complexity Low_complexity 1 22 0 2 1593 618 237 28 35 chr3 132154880 132155024 -27444759 - B1F SINE Alu -4 145 3 2 1593 207 0 0 0 chr3 132155237 132155260 -27444523 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2 1593 1055 72 0 0 chr3 132155260 132155398 -27444385 - B1_Mm SINE Alu -9 138 1 2 1593 366 115 0 0 chr3 132155604 132155665 -27444118 + (TGG)n Simple_repeat Simple_repeat 3 63 0 2 1593 639 244 14 43 chr3 132155682 132155790 -27443993 - B1_Mur2 SINE Alu -12 137 33 2 1593 2196 132 3 0 chr3 132155790 132156116 -27443667 + ORR1A2 LTR MaLR 1 327 0 2 1593 639 244 14 43 chr3 132156116 132156148 -27443635 - B1_Mur2 SINE Alu -117 32 1 2 1593 22 80 0 0 chr3 132157988 132158038 -27441745 + AT_rich Low_complexity Low_complexity 1 50 0 2 1593 1913 137 13 13 chr3 132158706 132159024 -27440759 + Lx2B LINE L1 6682 6999 -1 2 1593 33 80 0 0 chr3 132159273 132159348 -27440435 + AT_rich Low_complexity Low_complexity 1 75 0 2 1593 300 224 6 81 chr3 132159423 132159583 -27440200 + A-rich Low_complexity Low_complexity 5 152 0 2 1593 283 315 37 0 chr3 132159587 132159695 -27440088 - Lx7 LINE L1 -388 7308 7197 2 1593 380 192 60 10 chr3 132159787 132159887 -27439896 - Lx6 LINE L1 -182 7278 7174 2 1593 324 339 106 43 chr3 132160722 132160910 -27438873 - MLT1J LTR MaLR -31 481 282 2 1593 572 384 112 31 chr3 132161021 132161212 -27438571 + MLT1E2 LTR MaLR 1 200 -427 2 1593 576 29 0 0 chr3 132161212 132161282 -27438501 + (GA)n Simple_repeat Simple_repeat 2 71 0 2 1593 572 384 112 31 chr3 132161282 132161453 -27438330 + MLT1E2 LTR MaLR 201 388 -239 2 1593 253 0 54 0 chr3 132161453 132161490 -27438293 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 2 1593 572 384 112 31 chr3 132161490 132161704 -27438079 + MLT1E2 LTR MaLR 389 623 -4 2 1593 295 202 74 11 chr3 132162118 132162213 -27437570 - Tigger13a DNA MER2_type -431 340 240 2 1593 695 116 0 9 chr3 132162358 132162471 -27437312 + (TA)n Simple_repeat Simple_repeat 1 112 0 2 1593 3053 82 2 0 chr3 132162909 132163338 -27436445 - L1_Mm LINE L1 -1803 4080 3651 2 1593 7888 56 0 3 chr3 132163337 132164311 -27435472 + L1_Mus1 LINE L1 5597 6567 0 2 1593 968 111 7 0 chr3 132164328 132164481 -27435302 + (GAGAA)n Simple_repeat Simple_repeat 2 155 0 2 1593 1553 317 89 15 chr3 132164824 132165564 -27434219 - Lx8 LINE L1 -59 7414 6620 2 1593 780 336 49 38 chr3 132165568 132165695 -27434088 - Lx8 LINE L1 -119 7354 7232 2 1593 645 14 0 0 chr3 132165695 132165769 -27434014 + (TC)n Simple_repeat Simple_repeat 1 74 0 2 1593 780 336 49 38 chr3 132165769 132166092 -27433691 - Lx8 LINE L1 -242 7231 6901 2 1593 1187 322 48 76 chr3 132166097 132166297 -27433486 - L1_Mur3 LINE L1 -582 5298 5131 2 1593 801 123 135 6 chr3 132166297 132166453 -27433330 + B2_Mm2 SINE B2 1 176 -19 2 1593 1187 322 48 76 chr3 132166453 132167150 -27432633 - L1_Mur3 LINE L1 -750 5130 4426 2 1593 1096 273 50 34 chr3 132167164 132167702 -27432081 + L1_Mur3 LINE L1 3351 3897 -1983 2 1593 246 128 0 0 chr3 132167711 132167750 -27432033 + (GGA)n Simple_repeat Simple_repeat 2 40 0 3 1593 667 215 6 6 chr3 132168378 132168551 -27431232 + GA-rich Low_complexity Low_complexity 1 173 0 3 1593 207 0 0 0 chr3 132169006 132169029 -27430754 + (TG)n Simple_repeat Simple_repeat 2 24 0 3 1593 290 369 195 28 chr3 132170713 132171686 -27428097 - L2a LINE L2 -256 3170 2039 3 1593 200 167 0 20 chr3 132171687 132171699 -27428084 + polypyrimidine Low_complexity Low_complexity 38 49 0 3 1593 1265 6 34 6 chr3 132171699 132171874 -27427909 + (TTC)n Simple_repeat Simple_repeat 1 180 0 3 1593 200 167 0 20 chr3 132171874 132171910 -27427873 + CT-rich Low_complexity Low_complexity 2 37 0 3 1593 568 191 36 79 chr3 132171910 132172075 -27427708 + RMER10B LTR ERVL 195 352 -46 3 1593 195 355 151 17 chr3 132172192 132172424 -27427359 - L2a LINE L2 -1488 1931 1669 3 1593 392 0 0 20 chr3 132172557 132172606 -27427177 + (TC)n Simple_repeat Simple_repeat 2 49 0 3 1593 414 0 0 0 chr3 132172606 132172651 -27427132 + (TA)n Simple_repeat Simple_repeat 1 46 0 3 1593 3378 193 55 29 chr3 132172832 132173613 -27426170 + Lx2B LINE L1 6180 6980 -20 3 1593 375 217 54 16 chr3 132173641 132173754 -27426029 + PB1D7 SINE Alu 6 120 0 3 1593 25 0 0 0 chr3 132174533 132174558 -27425225 + AT_rich Low_complexity Low_complexity 1 25 0 3 1593 25 0 0 0 chr3 132174790 132174815 -27424968 + AT_rich Low_complexity Low_complexity 1 25 0 3 1593 608 121 118 139 chr3 132176182 132176326 -27423457 - B1_Mus1 SINE Alu -7 141 1 3 1593 550 349 76 44 chr3 132176435 132176750 -27423033 - MLT1B LTR MaLR -65 325 1 3 1593 202 234 0 15 chr3 132176915 132176980 -27422803 + (TTAA)n Simple_repeat Simple_repeat 3 66 0 3 1593 3506 59 15 9 chr3 132177434 132177920 -27421863 + L1Md_F2 LINE L1 6102 6582 0 3 1593 1365 65 43 0 chr3 132177926 132178110 -27421673 + B2_Mm2 SINE B2 3 194 -1 3 1593 190 180 0 32 chr3 132178497 132178560 -27421223 + GA-rich Low_complexity Low_complexity 1 61 0 3 1593 4498 145 36 8 chr3 132178565 132179321 -27420462 + Lx LINE L1 5867 6643 -11 3 1593 252 100 0 0 chr3 132179321 132179361 -27420422 + (TA)n Simple_repeat Simple_repeat 2 41 0 3 1593 510 131 8 34 chr3 132179361 132179480 -27420303 + (TG)n Simple_repeat Simple_repeat 2 117 0 3 1593 207 0 0 0 chr3 132179584 132179607 -27420176 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 3 1593 659 241 155 0 chr3 132179814 132179988 -27419795 + B3 SINE B2 5 205 -11 3 1593 29 28 0 0 chr3 132181236 132181272 -27418511 + AT_rich Low_complexity Low_complexity 1 36 0 3 1593 308 265 0 0 chr3 132181548 132181631 -27418152 + (CA)n Simple_repeat Simple_repeat 2 84 0 3 1593 417 115 0 0 chr3 132181669 132181747 -27418036 + (TG)n Simple_repeat Simple_repeat 2 79 0 3 1593 231 36 0 0 chr3 132181748 132181776 -27418007 + (GA)n Simple_repeat Simple_repeat 2 29 0 3 1593 517 258 158 11 chr3 132181854 132182038 -27417745 - B4A SINE B4 0 292 82 3 1593 2975 43 0 21 chr3 132182153 132182532 -27417251 - L1Md_F2 LINE L1 -12 6570 6200 3 1593 3391 39 0 130 chr3 132182532 132183033 -27416750 - RLTR10C LTR ERVK 0 436 1 3 1593 7477 34 3 22 chr3 132183033 132183987 -27415796 - MMERVK10C-int LTR ERVK 0 7581 6646 3 1593 5652 32 38 3 chr3 132183973 132184960 -27414823 - MMERVK10C-int LTR ERVK -1771 5810 4790 3 1593 1874 44 0 2 chr3 132184953 132185388 -27414395 - MMERVK10C-int LTR ERVK -1100 887 652 3 1593 339 67 0 0 chr3 132185391 132185436 -27414347 - MMERVK10C-int LTR ERVK -6405 137 93 3 1593 257 152 37 37 chr3 132185436 132185518 -27414265 + T-rich Low_complexity Low_complexity 3 84 0 3 1593 402 0 0 0 chr3 132185600 132185646 -27414137 - MMERVK10C-int LTR ERVK -7314 267 222 3 1593 245 191 0 0 chr3 132185646 132185688 -27414095 - RLTR27 LTR ERVK -37 272 231 3 1593 1451 33 0 0 chr3 132185688 132185868 -27413915 - MMERVK10C-int LTR ERVK -7401 180 1 3 1593 3729 37 5 0 chr3 132185868 132186302 -27413481 - RLTR10C LTR ERVK 0 436 1 3 1593 1246 82 0 0 chr3 132186304 132186474 -27413309 - L1Md_F2 LINE L1 -379 6203 6034 3 1593 271 277 24 0 chr3 132186474 132186557 -27413226 - B4A SINE B4 -205 87 3 3 1593 286 329 93 12 chr3 132186569 132186741 -27413042 - L2a LINE L2 -20 3406 3221 3 1593 234 174 0 0 chr3 132187214 132187260 -27412523 + A-rich Low_complexity Low_complexity 1 46 0 3 1593 535 287 21 29 chr3 132188496 132188636 -27411147 - RSINE1 SINE B4 -22 143 5 3 1593 212 131 0 21 chr3 132189507 132189554 -27410229 + (CTTG)n Simple_repeat Simple_repeat 2 47 0 3 1593 1146 258 92 14 chr3 132190106 132190401 -27409382 + ORR1D2 LTR MaLR 50 367 -3 3 1593 192 242 31 31 chr3 132190428 132190492 -27409291 + L2b LINE L2 3016 3079 -296 3 1593 21 0 0 0 chr3 132190631 132190652 -27409131 + AT_rich Low_complexity Low_complexity 1 21 0 3 1593 488 250 73 67 chr3 132190696 132190846 -27408937 + RSINE1 SINE B4 15 165 0 3 1593 377 352 83 63 chr3 132191406 132191542 -27408241 - L2a LINE L2 -35 3391 3253 3 1593 1084 54 0 13 chr3 132191542 132191692 -27408091 + (TA)n Simple_repeat Simple_repeat 2 149 0 3 1593 377 352 83 63 chr3 132191692 132191952 -27407831 - L2a LINE L2 -174 3252 2987 3 1593 706 251 254 51 chr3 132191957 132192357 -27407426 + RMER13A LTR ERVK 2 482 -378 3 1593 260 275 105 72 chr3 132192433 132192586 -27407197 + RMER13A LTR ERVK 741 898 -10 3 1593 475 311 118 52 chr3 132193432 132193796 -27405987 - L1ME1 LINE L1 -77 6102 5709 3 1593 777 207 0 0 chr3 132194582 132194717 -27405066 + B1_Mur4 SINE Alu 3 137 -13 3 1593 242 204 45 0 chr3 132194726 132194814 -27404969 + GA-rich Low_complexity Low_complexity 3 94 0 3 1593 756 223 0 0 chr3 132194845 132195020 -27404763 + GA-rich Low_complexity Low_complexity 3 177 0 3 1593 281 238 327 0 chr3 132196962 132197081 -27402702 + RSINE1 SINE B4 7 164 -1 3 1593 213 39 0 0 chr3 132197083 132197109 -27402674 + (CCA)n Simple_repeat Simple_repeat 1 26 0 3 1593 21 0 0 0 chr3 132197110 132197131 -27402652 + AT_rich Low_complexity Low_complexity 1 21 0 3 1593 277 165 21 0 chr3 132197681 132197778 -27402005 + GA-rich Low_complexity Low_complexity 1 99 0 3 1593 760 270 104 15 chr3 132197813 132198073 -27401710 + B4A SINE B4 4 286 -6 3 1593 447 52 0 0 chr3 132198084 132198142 -27401641 + (CA)n Simple_repeat Simple_repeat 2 59 0 3 1593 566 259 0 7 chr3 132198363 132198499 -27401284 - B1F2 SINE Alu -14 135 1 3 1593 216 86 0 0 chr3 132199442 132199477 -27400306 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 3 1593 1097 63 21 0 chr3 132199479 132199622 -27400161 - B1_Mm SINE Alu 0 147 2 3 1593 1195 91 63 0 chr3 132200309 132200484 -27399299 - B2_Mm2 SINE B2 -5 190 5 3 1593 432 255 10 0 chr3 132200526 132200628 -27399155 - U6 snRNA snRNA -3 104 2 3 1593 698 212 14 7 chr3 132200666 132200804 -27398979 - B1_Mm SINE Alu 0 147 9 3 1593 485 258 44 72 chr3 132200947 132200977 -27398806 + CYRA11_Mm Unknown Y-chromosome 141 163 -454 3 1593 1314 170 5 0 chr3 132200977 132201200 -27398583 - URR1A DNA MER1_type -2 224 1 3 1593 509 302 150 18 chr3 132201386 132201713 -27398070 + Charlie1 DNA MER1_type 1792 2161 -620 3 1593 330 317 107 79 chr3 132203237 132203453 -27396330 + MIRb SINE MIR 28 249 -19 3 1593 14300 158 31 14 chr3 132203636 132205821 -27393962 - Lx4B LINE L1 0 7058 4749 3 1593 2349 83 3 6 chr3 132205821 132206147 -27393636 - L1_Mus2 LINE L1 0 6566 6242 3 1593 14300 142 11 25 chr3 132206147 132206475 -27393308 - Lx4B LINE L1 -1129 4748 4435 3 1593 3276 45 22 0 chr3 132206475 132206877 -27392906 - IAPLTR2a LTR ERVK 0 411 1 3 1593 14300 142 11 25 chr3 132206877 132207856 -27391927 - Lx4B LINE L1 -1443 4434 3471 3 1593 513 0 0 0 chr3 132207856 132207913 -27391870 + (TTC)n Simple_repeat Simple_repeat 1 57 0 3 1593 14300 142 11 25 chr3 132207913 132208072 -27391711 - Lx4B LINE L1 -2407 3470 3312 3 1593 259 237 52 13 chr3 132208431 132208508 -27391275 + ORR1E LTR MaLR 14 93 -266 3 1593 3485 193 31 1 chr3 132209217 132209898 -27389885 + Lx4B LINE L1 6235 6935 -123 3 1593 204 97 0 0 chr3 132209945 132209976 -27389807 + (CAAT)n Simple_repeat Simple_repeat 2 32 0 3 1593 1707 252 45 36 chr3 132211330 132211885 -27387898 - MER68 LTR ERVL -1 562 3 3 1593 290 296 176 18 chr3 132212167 132212332 -27387451 + MER3 DNA MER1_type 17 207 -2 3 1593 358 79 32 0 chr3 132212582 132212645 -27387138 + (TG)n Simple_repeat Simple_repeat 2 66 0 3 1593 472 229 111 104 chr3 132212685 132213127 -27386656 + RLTR11B LTR ERVK 6 568 0 3 1593 490 165 28 0 chr3 132213893 132214002 -27385781 - Lx9 LINE L1 -36 7608 7497 3 1593 628 350 49 13 chr3 132214515 132214822 -27384961 + MER2 DNA MER2_type 11 328 -17 3 1593 236 377 74 51 chr3 132214812 132215027 -27384756 + MLT1J1 LTR MaLR 81 300 -144 3 1593 189 0 0 0 chr3 132215522 132215543 -27384240 + (TTTG)n Simple_repeat Simple_repeat 3 23 0 3 1593 419 296 25 42 chr3 132215623 132215743 -27384040 + B1F SINE Alu 1 118 -31 3 1593 297 0 0 0 chr3 132215760 132215793 -27383990 + (TAAA)n Simple_repeat Simple_repeat 1 33 0 3 1593 309 252 0 20 chr3 132215970 132216071 -27383712 + L1MD2 LINE L1 2719 2817 -3329 3 1593 297 0 0 0 chr3 132216072 132216105 -27383678 + (TA)n Simple_repeat Simple_repeat 1 33 0 3 1593 398 261 142 40 chr3 132216107 132216433 -27383350 + L1MD2 LINE L1 2934 3283 -2863 3 1593 375 87 29 14 chr3 132216433 132216503 -27383280 + (CA)n Simple_repeat Simple_repeat 2 72 0 3 1593 398 261 142 40 chr3 132216503 132216599 -27383184 + L1MD2 LINE L1 3284 3398 -2748 3 1593 204 222 22 0 chr3 132216691 132216736 -27383047 + CT-rich Low_complexity Low_complexity 2 47 0 3 1593 1086 303 80 55 chr3 132216786 132218111 -27381672 + L1MD2 LINE L1 4788 6159 -200 3 1593 338 344 40 0 chr3 132218154 132218279 -27381504 + L1MD2 LINE L1 6135 6264 -95 3 1593 183 80 0 0 chr3 132218733 132218758 -27381025 + (GAAAA)n Simple_repeat Simple_repeat 5 29 0 3 1593 805 229 68 32 chr3 132219498 132219656 -27380127 - RMER17C LTR ERVK -4 406 246 3 1593 822 85 0 0 chr3 132219656 132219785 -27379998 + (GGGGA)n Simple_repeat Simple_repeat 3 131 0 3 1593 1007 166 31 1 chr3 132219785 132219990 -27379793 - RMER17C LTR ERVK -165 245 1 3 1593 385 224 35 12 chr3 132220208 132220294 -27379489 - PB1D7 SINE Alu -29 91 4 3 1593 868 248 5 39 chr3 132220423 132220629 -27379154 - B3 SINE B2 0 216 18 3 1593 515 284 175 0 chr3 132221182 132221365 -27378418 + B3 SINE B2 2 216 0 3 1593 437 291 39 33 chr3 132221502 132221683 -27378100 + B3A SINE B2 1 182 -16 3 1593 275 340 81 34 chr3 132221777 132221926 -27377857 + MIRb SINE MIR 97 252 -10 3 1593 213 295 26 0 chr3 132222424 132222502 -27377281 + GA-rich Low_complexity Low_complexity 1 80 0 3 1593 799 37 19 0 chr3 132222698 132222805 -27376978 + (GGGA)n Simple_repeat Simple_repeat 4 112 0 3 1593 357 62 0 0 chr3 132222821 132222869 -27376914 + (TG)n Simple_repeat Simple_repeat 2 49 0 3 1593 450 228 39 10 chr3 132222892 132222994 -27376789 - B3A SINE B2 -84 114 10 3 1593 384 22 0 0 chr3 132223009 132223054 -27376729 + (CA)n Simple_repeat Simple_repeat 1 45 0 3 1593 1934 124 86 29 chr3 132226875 132227065 -27372718 - RMER17C LTR ERVK 0 410 214 4 1593 351 0 0 0 chr3 132227065 132227104 -27372679 + (GA)n Simple_repeat Simple_repeat 2 40 0 4 1593 1934 124 86 29 chr3 132227104 132227296 -27372487 - RMER17C LTR ERVK -197 213 6 4 1593 1421 161 4 4 chr3 132227353 132227578 -27372205 - URR1B DNA MER1_type 0 225 1 4 1593 29 0 0 0 chr3 132228576 132228605 -27371178 + AT_rich Low_complexity Low_complexity 1 29 0 4 1593 300 27 0 0 chr3 132231185 132231222 -27368561 + (TTTTG)n Simple_repeat Simple_repeat 3 39 0 4 1593 240 111 0 0 chr3 132231335 132231371 -27368412 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 4 1593 1118 119 6 0 chr3 132231517 132231685 -27368098 + URR1A DNA MER1_type 58 226 0 4 1593 681 268 23 6 chr3 132231753 132231776 -27368007 - B3 SINE B2 -26 190 165 4 1593 414 0 0 0 chr3 132231776 132231822 -27367961 + (TG)n Simple_repeat Simple_repeat 2 47 0 4 1593 681 268 23 6 chr3 132231822 132231971 -27367812 - B3 SINE B2 -52 164 16 4 1593 445 328 111 17 chr3 132232448 132232628 -27367155 + MER20 DNA MER1_type 23 219 0 4 1593 1771 159 17 3 chr3 132232642 132232944 -27366839 - RMER1A Other Other -1 1029 724 4 1593 658 327 56 30 chr3 132233737 132234074 -27365709 + ORR1E LTR MaLR 14 359 0 4 1593 2108 146 6 6 chr3 132234839 132235150 -27364633 - RLTR10E LTR ERVK 0 311 1 4 1593 4221 141 19 13 chr3 132235150 132235838 -27363945 - IAPEY3-int LTR ERVK 0 7680 6989 4 1593 1550 89 112 0 chr3 132235835 132236059 -27363724 - IAP-d-int LTR ERVK -1287 5255 5007 4 1593 357 175 0 0 chr3 132236059 132236116 -27363667 - IAP-d-int LTR ERVK -6039 503 447 4 1593 566 306 38 38 chr3 132236133 132236503 -27363280 - RLTR10-int LTR ERVK -6015 1566 1197 4 1593 3345 72 26 0 chr3 132236544 132236972 -27362811 - RLTR10-int LTR ERVK -983 1004 566 4 1593 454 112 46 39 chr3 132236972 132237102 -27362681 + CT-rich Low_complexity Low_complexity 3 133 0 4 1593 1381 51 6 17 chr3 132237199 132237379 -27362404 - RLTR10-int LTR ERVK -7403 178 1 4 1593 347 254 143 11 chr3 132237750 132237925 -27361858 - MER34A1 LTR ERV1 -71 516 319 4 1593 421 282 95 40 chr3 132237985 132238133 -27361650 - MER34A1 LTR ERV1 -385 202 47 4 1593 356 293 99 57 chr3 132238438 132238630 -27361153 + MLT1C LTR MaLR 227 426 -41 4 1593 750 184 0 16 chr3 132239869 132240051 -27359732 + CT-rich Low_complexity Low_complexity 2 180 0 4 1593 977 97 18 6 chr3 132241139 132241305 -27358478 + (GGGAGA)n Simple_repeat Simple_repeat 3 170 0 4 1593 716 95 77 31 chr3 132242388 132242518 -27357265 - B2_Mm2 SINE B2 -7 188 53 4 1593 249 320 136 0 chr3 132242524 132242627 -27357156 + Lx8 LINE L1 7216 7332 -141 4 1593 493 252 65 9 chr3 132242643 132242751 -27357032 + B1_Mur2 SINE Alu 3 116 -33 4 1593 4048 54 26 0 chr3 132242751 132243251 -27356532 + L1Md_F2 LINE L1 5074 5586 -297 4 1593 8569 42 10 1 chr3 132243251 132244238 -27355545 + L1Md_F2 LINE L1 5587 6582 0 4 1593 339 266 12 12 chr3 132244608 132244688 -27355095 + ID4 SINE ID 4 83 0 4 1593 504 176 11 0 chr3 132244816 132244907 -27354876 + L1M2 LINE L1 5694 5785 -515 4 1593 246 293 142 68 chr3 132244913 132244968 -27354815 + Lx9 LINE L1 6127 6180 -1293 4 1593 393 75 0 0 chr3 132244968 132245021 -27354762 + (TG)n Simple_repeat Simple_repeat 2 54 0 4 1593 2115 109 68 16 chr3 132245021 132245328 -27354455 - ORR1A3 LTR MaLR -3 323 1 4 1593 277 253 116 35 chr3 132245328 132245447 -27354336 + Lx9 LINE L1 6365 6426 -1218 4 1593 1292 213 86 99 chr3 132245449 132245744 -27354039 + RLTR41 LTR ERV1 10 302 -144 4 1593 3357 75 64 4 chr3 132245744 132246199 -27353584 + RLTR45 LTR ERVK 1 482 0 4 1593 1292 213 86 99 chr3 132246199 132246346 -27353437 + RLTR41 LTR ERV1 303 446 0 4 1593 24 0 0 0 chr3 132246417 132246441 -27353342 + AT_rich Low_complexity Low_complexity 1 24 0 4 1593 1887 309 78 30 chr3 132246446 132247293 -27352490 + Lx9 LINE L1 6730 7617 -27 4 1593 476 208 99 0 chr3 132249333 132249434 -27350349 - PB1D10 SINE Alu -6 111 1 4 1593 292 305 0 12 chr3 132249455 132249538 -27350245 + B4 SINE B4 2 83 -209 4 1593 291 54 0 0 chr3 132249543 132249580 -27350203 + (CA)n Simple_repeat Simple_repeat 2 38 0 4 1593 621 114 0 0 chr3 132249580 132249694 -27350089 + (GA)n Simple_repeat Simple_repeat 1 114 0 4 1593 1156 109 35 0 chr3 132249875 132250049 -27349734 + B2_Mm2 SINE B2 15 194 -1 4 1593 310 297 138 45 chr3 132250104 132250211 -27349572 - L2a LINE L2 -96 3330 3219 4 1593 669 236 27 20 chr3 132250211 132250358 -27349425 + B1_Mur1 SINE Alu 1 148 -1 4 1593 310 299 138 43 chr3 132250358 132250526 -27349257 - L2a LINE L2 -208 3218 3029 4 1593 1067 214 29 0 chr3 132250526 132250678 -27349105 + B3 SINE B2 1 152 -64 4 1593 266 73 24 0 chr3 132250678 132250719 -27349064 + (CA)n Simple_repeat Simple_repeat 2 43 0 4 1593 1067 214 29 0 chr3 132250719 132250776 -27349007 + B3 SINE B2 153 215 -1 4 1593 279 0 0 0 chr3 132250784 132250815 -27348968 + (GAAAA)n Simple_repeat Simple_repeat 4 34 0 4 1593 315 373 53 60 chr3 132250992 132251311 -27348472 - L2a LINE L2 -518 2901 2585 4 1593 36 23 0 0 chr3 132251566 132251609 -27348174 + AT_rich Low_complexity Low_complexity 1 43 0 4 1594 604 256 0 0 chr3 132252069 132252194 -27347589 - ORR1D1 LTR MaLR -249 125 1 4 1594 355 336 72 72 chr3 132252541 132252817 -27346966 + MER21B LTR ERV1 270 545 -318 4 1594 440 309 97 67 chr3 132252818 132253085 -27346698 + B4 SINE B4 3 277 -15 4 1594 744 315 50 43 chr3 132253183 132253505 -27346278 + MER21B LTR ERV1 529 852 -11 4 1594 227 351 61 8 chr3 132254314 132254446 -27345337 + L3b LINE CR1 157 295 -187 4 1594 557 306 78 86 chr3 132255042 132255403 -27344380 + ORR1D2 LTR MaLR 10 367 -3 4 1594 232 219 0 0 chr3 132255522 132255563 -27344220 - ID4 SINE ID -23 60 20 4 1594 676 283 6 12 chr3 132255953 132256114 -27343669 - RSINE1 SINE B4 -2 163 4 4 1594 22 35 0 0 chr3 132256173 132256202 -27343581 + AT_rich Low_complexity Low_complexity 1 29 0 4 1594 3262 222 51 18 chr3 132256400 132257281 -27342502 - Lx7 LINE L1 -1771 5925 5008 4 1594 1904 274 81 44 chr3 132257293 132257973 -27341810 + Lx7 LINE L1 5929 6633 -1063 4 1594 27 73 0 0 chr3 132257975 132258030 -27341753 + AT_rich Low_complexity Low_complexity 1 55 0 4 1594 21 57 0 0 chr3 132258219 132258254 -27341529 + AT_rich Low_complexity Low_complexity 1 35 0 4 1594 9692 83 19 13 chr3 132258512 132260674 -27339109 - L1VL2 LINE L1 -1274 2341 174 4 1594 341 230 14 0 chr3 132260695 132260769 -27339014 - B2_Mm2 SINE B2 -119 76 2 4 1594 1638 298 94 25 chr3 132260771 132261264 -27338519 + Lx7 LINE L1 6619 7161 -535 4 1594 3220 79 8 0 chr3 132261264 132261657 -27338126 + MTA_Mm LTR MaLR 1 396 0 4 1594 1638 298 94 25 chr3 132261657 132261847 -27337936 + Lx7 LINE L1 7162 7349 -347 4 1594 270 81 0 0 chr3 132261866 132261903 -27337880 + (T)n Simple_repeat Simple_repeat 1 37 0 4 1594 841 87 19 51 chr3 132262016 132262174 -27337609 + L1_Mur1 LINE L1 5144 5296 -590 4 1594 33518 76 13 1 chr3 132262204 132267398 -27332385 + L1Md_F2 LINE L1 331 5586 -297 4 1594 8215 49 23 10 chr3 132267398 132268380 -27331403 + L1Md_F2 LINE L1 5587 6581 -1 4 1594 425 295 66 19 chr3 132268391 132268602 -27331181 + L1M4c LINE L1 817 1037 -5347 4 1594 21 0 0 0 chr3 132268602 132268623 -27331160 + AT_rich Low_complexity Low_complexity 1 21 0 4 1594 614 268 49 14 chr3 132268629 132268773 -27331010 + B1F SINE Alu 1 149 0 4 1594 1436 167 24 63 chr3 132268801 132269133 -27330650 - MTC-int LTR MaLR -924 334 16 4 1594 2157 168 96 13 chr3 132269133 132269520 -27330263 - MTC LTR MaLR -2 419 1 4 1594 1705 233 79 79 chr3 132269801 132270332 -27329451 - RMER15 LTR ERVL 0 575 45 4 1594 272 237 17 0 chr3 132270381 132270440 -27329343 - RMER15 LTR ERVL -515 60 1 4 1594 380 242 252 50 chr3 132270577 132270799 -27328984 + L1M4c LINE L1 1083 1349 -5035 4 1594 305 333 9 9 chr3 132271031 132271146 -27328637 + L1MB2 LINE L1 5662 5776 -395 4 1594 226 288 186 5 chr3 132271255 132271454 -27328329 + L1MB2 LINE L1 5864 6098 -73 4 1594 460 0 0 0 chr3 132271573 132271631 -27328152 + L1_Mus3 LINE L1 6575 6632 -6 4 1594 207 0 0 0 chr3 132271709 132271732 -27328051 + (CAA)n Simple_repeat Simple_repeat 2 24 0 4 1594 3673 52 0 5 chr3 132273282 132273711 -27326072 + L1Md_F2 LINE L1 6152 6578 -4 4 1594 333 0 0 0 chr3 132274270 132274307 -27325476 + (CA)n Simple_repeat Simple_repeat 2 38 0 4 1594 267 250 17 0 chr3 132274307 132274367 -27325416 + GA-rich Low_complexity Low_complexity 2 62 0 4 1594 335 333 16 23 chr3 132275030 132275159 -27324624 - MIR3 SINE MIR -24 184 57 4 1594 481 241 9 27 chr3 132275289 132275400 -27324383 + PB1D10 SINE Alu 2 110 -7 4 1594 186 71 0 0 chr3 132275486 132275514 -27324269 + (CAAAAA)n Simple_repeat Simple_repeat 4 31 0 4 1594 244 255 159 85 chr3 132277256 132277432 -27322351 - MLT1F2 LTR MaLR 0 560 372 4 1594 14853 61 1 0 chr3 132277732 132279710 -27320073 + L1Md_F2 LINE L1 3608 5586 -297 4 1594 8150 41 3 2 chr3 132279710 132280704 -27319079 + L1Md_F2 LINE L1 5587 6581 -1 4 1594 252 291 45 9 chr3 132281083 132281194 -27318589 - Lx7 LINE L1 0 7696 7582 4 1594 301 131 0 32 chr3 132281194 132281239 -27318544 + polypyrimidine Low_complexity Low_complexity 21 64 0 4 1594 1077 140 0 0 chr3 132281239 132281417 -27318366 + (TTC)n Simple_repeat Simple_repeat 3 180 0 4 1594 301 131 0 32 chr3 132281417 132281434 -27318349 + polypyrimidine Low_complexity Low_complexity 4 20 0 4 1594 183 139 0 0 chr3 132281429 132281465 -27318318 + (TC)n Simple_repeat Simple_repeat 1 36 0 4 1594 1748 232 70 10 chr3 132281475 132281975 -27317808 - Lx7 LINE L1 -166 7530 7001 4 1594 997 305 72 25 chr3 132282283 132283389 -27316394 - L1MB7 LINE L1 -62 6122 4954 4 1594 403 103 23 11 chr3 132283449 132283537 -27316246 + (TTGG)n Simple_repeat Simple_repeat 2 90 0 4 1594 548 221 65 22 chr3 132283554 132283693 -27316090 - B1_Mur1 SINE Alu 0 149 5 4 1594 369 0 0 0 chr3 132283708 132283749 -27316034 + (TTG)n Simple_repeat Simple_repeat 1 41 0 4 1594 585 0 0 0 chr3 132283749 132283814 -27315969 + (TTC)n Simple_repeat Simple_repeat 2 66 0 4 1594 1356 69 0 0 chr3 132284615 132285110 -27314673 + (TCC)n Simple_repeat Simple_repeat 1 495 0 4 1594 212 152 0 42 chr3 132285710 132285758 -27314025 + T-rich Low_complexity Low_complexity 3 48 0 4 1594 1340 83 33 0 chr3 132285907 132286087 -27313696 + B2_Mm2 SINE B2 1 186 -9 4 1594 223 284 122 36 chr3 132287417 132287484 -27312299 + MIR SINE MIR 112 194 -68 4 1594 186 43 0 0 chr3 132287484 132287507 -27312276 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 4 1594 223 284 122 36 chr3 132287507 132287578 -27312205 + MIR SINE MIR 195 261 -1 4 1594 468 0 0 0 chr3 132287823 132287875 -27311908 + (TC)n Simple_repeat Simple_repeat 1 52 0 4 1594 433 364 129 23 chr3 132288377 132288571 -27311212 + B4 SINE B4 1 216 -76 4 1594 7364 29 0 0 chr3 132288571 132289432 -27310351 + L1Md_T LINE L1 5722 6582 0 4 1594 433 364 129 23 chr3 132289432 132289501 -27310282 + B4 SINE B4 217 291 -1 4 1594 26 50 0 0 chr3 132289561 132289601 -27310182 + AT_rich Low_complexity Low_complexity 1 40 0 4 1594 1239 177 5 19 chr3 132290557 132290770 -27309013 - URR1B DNA MER1_type -15 210 1 4 1594 10115 165 42 19 chr3 132293197 132295364 -27304419 - L1_Mur2 LINE L1 -1388 4489 2271 4 1594 4049 171 104 1 chr3 132295363 132296247 -27303536 + L1_Mur2 LINE L1 4484 5458 -419 4 1594 23 0 0 0 chr3 132296285 132296308 -27303475 + AT_rich Low_complexity Low_complexity 1 23 0 4 1594 377 298 86 9 chr3 132296321 132296426 -27303357 + B1F SINE Alu 5 117 -32 4 1594 319 366 114 0 chr3 132296426 132296440 -27303343 + ID_B1 SINE B4 86 218 -6 4 1594 1076 217 0 15 chr3 132296449 132296655 -27303128 + B3 SINE B2 4 206 -10 5 1594 888 295 77 56 chr3 132297054 132297256 -27302527 + MER2 DNA MER2_type 1 214 -131 5 1594 1153 151 97 0 chr3 132297256 132297462 -27302321 + URR1A DNA MER1_type 1 226 0 5 1594 888 295 77 56 chr3 132297462 132297597 -27302186 + MER2 DNA MER2_type 215 345 0 5 1594 890 158 24 12 chr3 132298260 132298426 -27301357 - URR1A DNA MER1_type 0 226 59 5 1594 282 275 0 14 chr3 132298574 132298644 -27301139 + MER5A DNA MER1_type 6 74 -115 5 1594 873 55 0 0 chr3 132301173 132301283 -27298500 - MTB LTR MaLR 0 396 287 5 1594 2722 45 0 0 chr3 132301283 132301617 -27298166 - IAPEY2_LTR LTR ERVK 0 357 24 5 1594 2208 51 17 3 chr3 132301609 132301904 -27297879 - MTB LTR MaLR -101 299 1 5 1594 212 319 81 32 chr3 132302001 132302124 -27297659 + MIRb SINE MIR 1 129 -139 5 1594 323 365 0 34 chr3 132302284 132302403 -27297380 + MIR3 SINE MIR 58 172 -36 5 1594 324 0 0 0 chr3 132302504 132302540 -27297243 + (CA)n Simple_repeat Simple_repeat 2 37 0 5 1594 4113 52 14 8 chr3 132303578 132304097 -27295686 + L1Md_F2 LINE L1 6049 6570 -12 5 1594 284 274 122 113 chr3 132304201 132304316 -27295467 - RSINE1 SINE B4 -1 164 49 5 1594 220 254 18 35 chr3 132304888 132304945 -27294838 - RSINE1 SINE B4 -104 61 6 5 1594 701 318 77 21 chr3 132304962 132305287 -27294496 - MLT1B LTR MaLR -45 345 3 5 1594 356 243 67 19 chr3 132306081 132306186 -27293597 + PB1D9 SINE Alu 2 111 -9 5 1594 189 0 0 0 chr3 132307266 132307287 -27292496 + (T)n Simple_repeat Simple_repeat 1 21 0 5 1594 698 303 79 42 chr3 132307775 132308229 -27291554 + L1ME3A LINE L1 5628 6098 -75 5 1594 343 237 50 30 chr3 132309103 132309267 -27290516 - L1MA5 LINE L1 -8 6292 6125 5 1594 864 29 0 0 chr3 132309553 132309656 -27290127 + (TTTC)n Simple_repeat Simple_repeat 2 104 0 5 1594 1294 276 54 42 chr3 132311085 132311581 -27288202 - RMER5 LTR ERV1 0 534 33 5 1594 1098 207 14 0 chr3 132311658 132311871 -27287912 - B3 SINE B2 0 216 1 5 1594 497 234 351 2 chr3 132313835 132314045 -27285738 - MTC LTR MaLR -128 293 13 5 1594 234 273 0 0 chr3 132314057 132314112 -27285671 - MTC-int LTR MaLR 0 1258 1204 5 1594 817 211 320 4 chr3 132314112 132314269 -27285514 - ORR1D1 LTR MaLR 0 374 176 5 1594 834 95 0 0 chr3 132314269 132314395 -27285388 + (GGGA)n Simple_repeat Simple_repeat 3 128 0 5 1594 817 211 320 4 chr3 132314395 132314484 -27285299 - ORR1D1 LTR MaLR -199 175 50 5 1594 4401 221 105 29 chr3 132314510 132315782 -27284001 - ORR1D1-int LTR MaLR -2 1368 1 5 1594 1157 206 69 44 chr3 132315796 132316107 -27283676 - ORR1D1 LTR MaLR -2 357 1 5 1594 3656 203 146 67 chr3 132316107 132316806 -27282977 - MTC-int LTR MaLR -49 1209 395 5 1594 360 0 0 0 chr3 132316806 132316846 -27282937 + (TC)n Simple_repeat Simple_repeat 2 41 0 5 1594 3656 203 146 67 chr3 132316846 132316872 -27282911 - MTC-int LTR MaLR -864 394 394 5 1594 1218 54 0 0 chr3 132316872 132317019 -27282764 - B1_Mus1 SINE Alu 0 148 2 5 1594 1255 113 0 16 chr3 132317029 132317217 -27282566 - B2_Mm2 SINE B2 -8 187 3 5 1594 3656 203 146 67 chr3 132317217 132317599 -27282184 - MTC-int LTR MaLR -864 394 1 5 1594 604 215 202 11 chr3 132317602 132317807 -27281976 - MTC LTR MaLR -19 402 159 5 1594 358 147 162 0 chr3 132317807 132317875 -27281908 + MT2A LTR ERVL 1 79 -454 5 1594 1147 100 0 16 chr3 132317881 132318064 -27281719 + (TTTTC)n Simple_repeat Simple_repeat 1 180 0 5 1594 336 143 0 0 chr3 132318064 132318120 -27281663 + (TCTCC)n Simple_repeat Simple_repeat 5 60 0 5 1594 994 201 59 70 chr3 132318821 132319147 -27280636 + MT2A LTR ERVL 116 601 0 5 1594 790 228 18 5 chr3 132319147 132319306 -27280477 - MTD LTR MaLR -247 174 18 5 1594 249 33 0 0 chr3 132319306 132319336 -27280447 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 5 1594 518 225 137 48 chr3 132319627 132319795 -27279988 + B3A SINE B2 2 184 -14 5 1594 2375 185 33 18 chr3 132319907 132320359 -27279424 + RMER20B LTR ERVK 10 468 -159 5 1594 7401 54 3 7 chr3 132320590 132321567 -27278216 - L1Md_F2 LINE L1 0 6582 5610 5 1594 362 304 103 7 chr3 132321770 132321911 -27277872 - MTE-int LTR MaLR -42 1538 1384 5 1594 2683 177 37 20 chr3 132321911 132322447 -27277336 - RLTR17 LTR ERVK 0 692 148 5 1594 264 234 13 4 chr3 132322431 132322501 -27277282 - BGLII_Mus LTR ERVK -356 89 18 5 1594 411 181 4 48 chr3 132322517 132322658 -27277125 - RMER3D-int LTR ERVK -2481 361 282 5 1594 909 302 52 44 chr3 132323022 132323365 -27276418 - MTE-int LTR MaLR -1234 346 1 5 1594 225 235 147 0 chr3 132323949 132324017 -27275766 - ID SINE ID -146 78 1 5 1594 423 0 0 0 chr3 132324582 132324629 -27275154 + (CA)n Simple_repeat Simple_repeat 2 48 0 5 1594 2022 263 132 17 chr3 132325086 132325834 -27273949 + Tigger1 DNA MER2_type 876 1709 -709 5 1594 798 314 58 30 chr3 132325947 132326186 -27273597 + Tigger1 DNA MER2_type 2048 2297 -121 5 1594 322 205 190 74 chr3 132326186 132326307 -27273476 - B1_Mur1 SINE Alu -13 136 2 5 1594 798 314 58 30 chr3 132326307 132326428 -27273355 + Tigger1 DNA MER2_type 2298 2418 0 5 1594 312 351 43 26 chr3 132326620 132326737 -27273046 + RSINE1 SINE B4 47 165 0 5 1594 449 216 108 76 chr3 132327082 132327267 -27272516 + B3A SINE B2 1 191 -7 5 1594 2360 104 3 0 chr3 132328223 132328549 -27271234 + ORR1A2 LTR MaLR 1 327 0 5 1594 435 68 0 0 chr3 132329218 132329277 -27270506 + (TAGA)n Simple_repeat Simple_repeat 4 62 0 5 1594 342 219 0 0 chr3 132329886 132329950 -27269833 + B1F SINE Alu 1 64 -85 5 1594 510 252 105 70 chr3 132330798 132330969 -27268814 - B3 SINE B2 -14 202 26 5 1594 672 168 34 20 chr3 132332001 132332147 -27267636 + B1_Mus1 SINE Alu 1 148 0 5 1594 391 292 0 24 chr3 132332187 132332310 -27267473 + PB1D9 SINE Alu 1 120 0 5 1594 288 296 192 8 chr3 132332400 132332655 -27267128 + L2a LINE L2 2780 3081 -338 5 1594 1165 43 0 0 chr3 132332835 132332973 -27266810 + B1_Mus1 SINE Alu 2 139 -9 5 1594 207 0 0 0 chr3 132332973 132332996 -27266787 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 5 1594 194 296 0 0 chr3 132333111 132333165 -27266618 + L2a LINE L2 3360 3413 -13 5 1594 207 100 0 0 chr3 132334499 132334529 -27265254 + (T)n Simple_repeat Simple_repeat 1 30 0 5 1594 1131 61 0 13 chr3 132334529 132334678 -27265105 - B1_Mus2 SINE Alu 0 147 1 5 1594 183 100 0 0 chr3 132335184 132335214 -27264569 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 5 1594 21 0 0 0 chr3 132335313 132335334 -27264449 + AT_rich Low_complexity Low_complexity 1 21 0 5 1594 236 275 12 0 chr3 132335335 132335415 -27264368 + MER44B DNA MER2_type 348 428 -122 5 1594 302 290 43 0 chr3 132335718 132335811 -27263972 - MER3 DNA MER1_type -106 103 7 5 1594 1179 68 0 0 chr3 132336042 132336190 -27263593 + B1_Mus1 SINE Alu 1 148 0 5 1594 628 282 113 8 chr3 132338223 132338480 -27261303 - B4A SINE B4 -8 284 1 5 1594 233 298 131 50 chr3 132338552 132338651 -27261132 + MER20B DNA MER1_type 34 140 -643 5 1594 751 223 106 5 chr3 132339239 132339428 -27260355 + MTD LTR MaLR 5 212 -207 5 1594 273 24 0 0 chr3 132339428 132339469 -27260314 + L1Md_T LINE L1 6542 6582 0 5 1594 306 276 13 1 chr3 132339506 132339597 -27260186 + Lx5 LINE L1 6774 6855 -195 5 1594 24 0 0 0 chr3 132339612 132339636 -27260147 + AT_rich Low_complexity Low_complexity 1 24 0 5 1594 672 189 189 0 chr3 132339649 132339797 -27259986 + MTD LTR MaLR 224 399 -20 5 1594 22 35 0 0 chr3 132340858 132340887 -27258896 + AT_rich Low_complexity Low_complexity 1 29 0 5 1594 237 290 39 20 chr3 132341831 132341933 -27257850 + ORR1E LTR MaLR 171 274 -145 5 1594 249 269 15 0 chr3 132341949 132342016 -27257767 + ORR1E LTR MaLR 292 359 0 5 1594 710 215 68 31 chr3 132342656 132342819 -27256964 + B3 SINE B2 46 214 -2 5 1594 197 295 16 32 chr3 132343000 132343063 -27256720 - MIRb SINE MIR -178 90 29 5 1594 1159 228 93 40 chr3 132344041 132344419 -27255364 + MT2A LTR ERVL 8 537 -64 5 1594 230 351 75 15 chr3 132344602 132344735 -27255048 - Kanga1c DNA Tc2 -558 171 31 5 1594 346 309 116 29 chr3 132345615 132345788 -27253995 + L2 LINE L2 2682 2869 -550 5 1594 491 286 38 9 chr3 132346104 132346292 -27253491 + B3A SINE B2 19 211 -5 5 1594 203 306 0 16 chr3 132347569 132347632 -27252151 + CT-rich Low_complexity Low_complexity 2 63 0 5 1594 254 247 41 0 chr3 132349139 132349236 -27250547 + PB1D10 SINE Alu 2 102 -15 5 1594 189 0 0 0 chr3 132349494 132349515 -27250268 + (T)n Simple_repeat Simple_repeat 1 21 0 5 1594 1214 21 14 0 chr3 132349515 132349660 -27250123 - B1_Mus1 SINE Alu 0 148 2 5 1594 378 181 24 0 chr3 132350490 132350573 -27249210 - URR1B DNA MER1_type -58 167 83 5 1594 208 329 14 0 chr3 132350638 132350711 -27249072 - MIR SINE MIR -76 186 113 5 1594 2023 116 0 3 chr3 132351055 132351358 -27248425 + MT2B2 LTR ERVL 1 302 -282 5 1594 563 56 0 0 chr3 132351348 132351420 -27248363 - ORR1A2 LTR MaLR -255 72 1 5 1594 853 170 14 0 chr3 132353238 132353379 -27246404 + B1_Mus1 SINE Alu 1 143 -5 5 1594 347 217 9 0 chr3 132353382 132353488 -27246295 + GA-rich Low_complexity Low_complexity 2 108 0 5 1594 33 25 0 0 chr3 132354000 132354040 -27245743 + AT_rich Low_complexity Low_complexity 1 40 0 5 1594 367 264 110 52 chr3 132354102 132354238 -27245545 - RSINE1 SINE B4 -20 145 2 5 1594 25 31 0 0 chr3 132354474 132354506 -27245277 + AT_rich Low_complexity Low_complexity 1 32 0 5 1594 545 284 12 36 chr3 132354506 132354674 -27245109 - B3A SINE B2 -32 166 3 5 1594 2269 74 128 8 chr3 132355197 132355563 -27244220 - BGLII LTR ERVK -11 410 1 5 1594 1103 191 109 5 chr3 132355563 132355931 -27243852 - MYSERV16_I-int LTR ERVK 0 2326 1921 5 1594 589 264 18 48 chr3 132355965 132356132 -27243651 + RSINE1 SINE B4 4 165 0 5 1594 820 177 0 20 chr3 132356188 132356338 -27243445 + B1_Mur4 SINE Alu 1 147 -3 5 1594 312 230 97 69 chr3 132356751 132356896 -27242887 - B1F SINE Alu 0 149 1 5 1594 22 80 0 0 chr3 132357929 132357979 -27241804 + AT_rich Low_complexity Low_complexity 1 50 0 5 1594 198 167 0 0 chr3 132358326 132358362 -27241421 + GA-rich Low_complexity Low_complexity 3 38 0 5 1594 582 325 55 52 chr3 132359345 132359747 -27240036 - L1M5 LINE L1 -1745 4401 3999 5 1594 21 0 0 0 chr3 132359795 132359816 -27239967 + AT_rich Low_complexity Low_complexity 1 21 0 5 1594 1111 41 13 46 chr3 132359849 132360001 -27239782 - B1_Mm SINE Alu 0 147 1 5 1594 539 309 62 10 chr3 132360758 132360951 -27238832 + B3A SINE B2 2 204 -12 5 1594 242 288 0 0 chr3 132361434 132361500 -27238283 + L2 LINE L2 2302 2367 -1052 5 1594 655 277 115 33 chr3 132361577 132361820 -27237963 + MTE2a LTR MaLR 6 268 -111 6 1594 226 276 0 17 chr3 132361936 132361995 -27237788 - ORR1E LTR MaLR -267 92 35 6 1594 2606 295 106 65 chr3 132362047 132363167 -27236616 - MTEa-int LTR MaLR -159 1421 256 6 1594 1398 156 5 0 chr3 132363167 132363391 -27236392 - URR1B DNA MER1_type 0 225 1 6 1594 719 286 98 4 chr3 132363391 132363626 -27236157 - MTEa-int LTR MaLR -1317 263 7 6 1594 402 306 61 30 chr3 132363631 132363796 -27235987 - MTEa LTR MaLR 0 379 210 6 1594 701 258 0 55 chr3 132364043 132364207 -27235576 - RSINE1 SINE B4 0 165 11 6 1594 267 93 0 0 chr3 132364586 132364629 -27235154 + (TG)n Simple_repeat Simple_repeat 1 43 0 6 1594 243 0 0 0 chr3 132364629 132364655 -27235128 + (GA)n Simple_repeat Simple_repeat 1 27 0 6 1594 23 0 0 0 chr3 132364742 132364765 -27235018 + AT_rich Low_complexity Low_complexity 1 23 0 6 1594 1844 276 116 26 chr3 132364854 132365896 -27233887 - Lx9 LINE L1 -149 7495 6361 6 1594 334 273 179 5 chr3 132366016 132366200 -27233583 - L1ME1 LINE L1 -2 6177 5962 6 1594 3316 170 62 62 chr3 132366335 132366658 -27233125 + RLTR25A LTR ERVK 5 334 -769 6 1594 1221 102 45 0 chr3 132366658 132366835 -27232948 + B2_Mm2 SINE B2 1 185 -10 6 1594 3316 192 109 58 chr3 132366835 132367401 -27232382 + RLTR25A LTR ERVK 333 1027 -1 6 1594 775 184 0 47 chr3 132367487 132367635 -27232148 + B1_Mur4 SINE Alu 10 150 0 6 1594 22 0 0 0 chr3 132367763 132367785 -27231998 + AT_rich Low_complexity Low_complexity 1 22 0 6 1594 1109 75 14 0 chr3 132369283 132369429 -27230354 + B1_Mus1 SINE Alu 1 148 0 6 1594 646 248 27 41 chr3 132370047 132370266 -27229517 - B3 SINE B2 0 216 1 6 1594 666 279 10 31 chr3 132370439 132370631 -27229152 + B3A SINE B2 5 192 -6 6 1594 180 111 0 0 chr3 132371961 132371988 -27227795 + (T)n Simple_repeat Simple_repeat 1 27 0 6 1594 687 227 0 28 chr3 132371990 132372135 -27227648 - B1_Mur2 SINE Alu -7 142 2 6 1594 255 158 0 0 chr3 132372183 132372221 -27227562 - B1F SINE Alu -34 115 78 6 1594 23 0 0 0 chr3 132372459 132372482 -27227301 + AT_rich Low_complexity Low_complexity 1 23 0 6 1594 7370 83 16 13 chr3 132372581 132373881 -27225902 - L1_Mus3 LINE L1 0 6638 5367 6 1594 1147 69 7 0 chr3 132373881 132374026 -27225757 - B1_Mm SINE Alu 0 147 2 6 1594 6495 109 71 23 chr3 132374026 132374598 -27225185 - L1_Mus3 LINE L1 -517 5366 4720 6 1594 7379 82 3 2 chr3 132374598 132376238 -27223545 + L1_Mus1 LINE L1 4925 6567 0 6 1594 25 0 0 0 chr3 132376238 132376263 -27223520 + AT_rich Low_complexity Low_complexity 1 25 0 6 1594 1621 108 229 0 chr3 132376263 132376569 -27223214 - L1_Mus3 LINE L1 -1350 4533 4158 6 1594 707 119 0 0 chr3 132376616 132376717 -27223066 + B1_Mus2 SINE Alu 47 147 0 6 1594 240 35 0 0 chr3 132376717 132376746 -27223037 + (A)n Simple_repeat Simple_repeat 1 29 0 6 1594 639 197 27 33 chr3 132378201 132378385 -27221398 - Lx9 LINE L1 -22 7622 7440 6 1594 795 82 197 0 chr3 132379822 132379944 -27219839 - B1_Mm SINE Alu 0 147 2 6 1594 23 33 0 0 chr3 132380221 132380251 -27219532 + AT_rich Low_complexity Low_complexity 1 30 0 6 1594 5211 30 3 9 chr3 132381704 132382337 -27217446 + L1Md_F3 LINE L1 5953 6581 -3 6 1595 1184 61 0 0 chr3 132382972 132383119 -27216664 - B1_Mus2 SINE Alu 0 147 1 6 1595 21 0 0 0 chr3 132383174 132383195 -27216588 + AT_rich Low_complexity Low_complexity 1 21 0 6 1595 457 264 15 23 chr3 132383553 132383685 -27216098 - MLT1A1 LTR MaLR -7 401 271 6 1595 626 267 138 34 chr3 132383821 132384334 -27215449 - Lx8 LINE L1 0 7473 6742 6 1595 27 29 0 0 chr3 132384521 132384555 -27215228 + AT_rich Low_complexity Low_complexity 1 34 0 6 1595 4417 88 13 8 chr3 132384556 132385171 -27214612 - Lx LINE L1 -3 6651 6034 6 1595 22 56 0 0 chr3 132385202 132385238 -27214545 + AT_rich Low_complexity Low_complexity 1 36 0 6 1595 2972 151 19 46 chr3 132385982 132386550 -27213233 + RLTR31_Mur LTR ERVK 1 553 0 6 1595 287 266 155 21 chr3 132387011 132387153 -27212630 + L1MCa LINE L1 583 743 -5765 6 1595 747 297 116 40 chr3 132387164 132387637 -27212146 - L1MCa LINE L1 -5992 516 8 6 1595 1134 168 47 5 chr3 132388037 132388252 -27211531 - URR1B DNA MER1_type 0 225 2 6 1595 467 262 98 0 chr3 132388373 132388495 -27211288 - ID_B1 SINE B4 -3 221 88 6 1595 24 77 0 0 chr3 132388977 132389029 -27210754 + AT_rich Low_complexity Low_complexity 1 52 0 6 1595 21 36 0 0 chr3 132389266 132389294 -27210489 + AT_rich Low_complexity Low_complexity 1 28 0 6 1595 26 0 0 0 chr3 132389313 132389339 -27210444 + AT_rich Low_complexity Low_complexity 1 26 0 6 1595 1218 62 28 6 chr3 132389778 132389955 -27209828 + L1_Mus3 LINE L1 6455 6635 -3 6 1595 23 33 0 0 chr3 132391022 132391052 -27208731 + AT_rich Low_complexity Low_complexity 1 30 0 6 1595 216 0 0 0 chr3 132391065 132391089 -27208694 + (TGG)n Simple_repeat Simple_repeat 3 26 0 6 1595 265 298 212 44 chr3 132391108 132391245 -27208538 - RSINE1 SINE B4 -4 161 2 6 1595 851 281 51 69 chr3 132391298 132391966 -27207817 - L1MA6 LINE L1 -28 6272 5617 6 1595 282 361 142 18 chr3 132391971 132392140 -27207643 + ORR1E LTR MaLR 1 190 -169 6 1595 1121 265 134 64 chr3 132392221 132392765 -27207018 - L1MA6 LINE L1 -688 5612 5054 6 1595 4953 136 35 6 chr3 132392765 132393593 -27206190 - Lx2 LINE L1 -3 6994 6143 6 1595 1121 262 156 84 chr3 132393593 132394161 -27205622 - L1MA6 LINE L1 -1090 5053 4460 6 1595 478 246 17 17 chr3 132394161 132394277 -27205506 - PB1D10 SINE Alu 0 117 2 6 1595 1121 262 156 84 chr3 132394277 132395090 -27204693 - L1MA6 LINE L1 -1684 4459 3548 6 1595 256 352 57 0 chr3 132395295 132395400 -27204383 + PB1D10 SINE Alu 3 113 -4 6 1595 29 94 0 0 chr3 132395437 132395522 -27204261 + AT_rich Low_complexity Low_complexity 1 85 0 6 1595 23 54 0 0 chr3 132395953 132395990 -27203793 + AT_rich Low_complexity Low_complexity 1 37 0 6 1595 314 252 188 20 chr3 132396826 132396927 -27202856 - PB1D9 SINE Alu 0 120 3 6 1595 224 298 122 9 chr3 132398497 132398612 -27201171 - MIR SINE MIR -64 144 17 6 1595 394 157 92 46 chr3 132399726 132399813 -27199970 + BC1_Mm scRNA scRNA 1 91 -61 6 1595 26 30 0 0 chr3 132402045 132402078 -27197705 + AT_rich Low_complexity Low_complexity 1 33 0 6 1595 726 288 44 0 chr3 132402118 132402323 -27197460 + B3 SINE B2 1 214 -2 6 1595 3827 55 40 0 chr3 132403390 132403864 -27195919 - L1Md_F2 LINE L1 -12 6570 6078 6 1595 198 0 0 0 chr3 132404147 132404169 -27195614 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 6 1595 1122 80 0 0 chr3 132404169 132404306 -27195477 - B1_Mus2 SINE Alu -9 138 2 6 1595 360 0 0 0 chr3 132404494 132404534 -27195249 + (TG)n Simple_repeat Simple_repeat 2 41 0 6 1595 632 287 81 99 chr3 132404535 132405077 -27194706 - RLTR18B LTR ERVK 0 616 95 6 1595 414 0 0 0 chr3 132405118 132405164 -27194619 + (TG)n Simple_repeat Simple_repeat 1 46 0 6 1595 459 271 219 5 chr3 132405175 132405410 -27194373 - B4A SINE B4 -8 284 1 6 1595 234 0 0 0 chr3 132406584 132406610 -27193173 + (T)n Simple_repeat Simple_repeat 1 26 0 6 1595 265 244 95 22 chr3 132406917 132407155 -27192628 + Lx9 LINE L1 7316 7596 -48 6 1595 212 309 0 0 chr3 132408248 132408316 -27191467 + PB1D10 SINE Alu 39 106 -11 6 1595 869 246 104 40 chr3 132408510 132408807 -27190976 - Charlie1a DNA MER1_type -490 965 650 6 1595 271 330 136 31 chr3 132408778 132409006 -27190777 + B4 SINE B4 40 291 -1 6 1595 684 298 37 0 chr3 132409076 132409267 -27190516 - B3A SINE B2 0 198 1 6 1595 556 252 65 26 chr3 132409299 132409454 -27190329 - Charlie1a DNA MER1_type -859 596 436 6 1595 232 291 165 0 chr3 132409580 132409659 -27190124 - Charlie1a DNA MER1_type -1253 202 111 6 1595 307 290 101 25 chr3 132409890 132410049 -27189734 - Looper DNA PiggyBac -1188 370 200 6 1595 288 344 31 15 chr3 132410486 132410616 -27189167 + ID_B1 SINE B4 84 215 -9 6 1595 298 242 19 142 chr3 132410515 132410621 -27189162 + PB1 SINE Alu 32 124 -3 6 1595 198 0 0 0 chr3 132410706 132410728 -27189055 + (GGAA)n Simple_repeat Simple_repeat 3 24 0 6 1595 448 194 148 21 chr3 132411246 132411388 -27188395 + B3A SINE B2 1 160 -38 6 1595 296 344 114 66 chr3 132411691 132412718 -27187065 - L2 LINE L2 -352 3067 1992 6 1595 418 361 65 78 chr3 132413509 132413818 -27185965 - MLT2B1 LTR ERVL -215 305 1 6 1595 1766 62 0 0 chr3 132414254 132414479 -27185304 + L1_Mus1 LINE L1 6343 6567 0 6 1595 343 333 8 57 chr3 132415178 132415302 -27184481 + B3A SINE B2 2 119 -79 6 1595 860 245 54 5 chr3 132416283 132416488 -27183295 + B3 SINE B2 2 216 0 6 1595 6072 159 113 8 chr3 132416513 132418057 -27181726 - Lx5 LINE L1 0 7050 5340 6 1595 216 135 0 0 chr3 132419531 132419568 -27180215 + (TTA)n Simple_repeat Simple_repeat 3 39 0 6 1595 182 261 44 44 chr3 132419788 132419856 -27179927 + MIRb SINE MIR 31 98 -170 6 1595 1595 186 34 25 chr3 132419956 132420282 -27179501 + MTC LTR MaLR 14 342 -79 6 1595 4304 97 23 29 chr3 132420393 132420699 -27179084 - Lx2 LINE L1 -3 6994 6690 6 1595 3356 43 2 0 chr3 132420699 132421094 -27178689 - MTA_Mm LTR MaLR 0 396 1 6 1595 4304 97 23 29 chr3 132421094 132421438 -27178345 - Lx2 LINE L1 -308 6689 6348 6 1595 3118 114 12 0 chr3 132421438 132421937 -27177846 + L1_Mur2 LINE L1 4332 4836 -1041 6 1595 1374 87 11 0 chr3 132422184 132422367 -27177416 - B2_Mm2 SINE B2 -9 186 2 6 1595 384 292 10 0 chr3 132422370 132422466 -27177317 - RSINE1 SINE B4 -67 98 2 6 1595 256 195 37 49 chr3 132422938 132423019 -27176764 + MER53 DNA hAT 31 110 -83 6 1595 7170 50 15 0 chr3 132423046 132423986 -27175797 - L1Md_F3 LINE L1 -14 6570 5617 6 1595 535 221 13 111 chr3 132424089 132424242 -27175541 + RSINE1 SINE B4 28 165 0 6 1595 207 0 0 0 chr3 132424420 132424443 -27175340 + (TA)n Simple_repeat Simple_repeat 1 23 0 6 1595 1359 218 63 0 chr3 132425437 132425785 -27173998 - ORR1D2 LTR MaLR 0 370 1 6 1595 244 267 17 0 chr3 132425893 132425953 -27173830 + ID4 SINE ID 5 65 -18 6 1595 842 271 59 0 chr3 132426560 132426763 -27173020 - ID_B1 SINE B4 -4 220 6 7 1595 398 296 103 43 chr3 132427938 132428122 -27171661 + B4 SINE B4 1 195 -97 7 1595 744 252 14 59 chr3 132428588 132428807 -27170976 + B3 SINE B2 2 210 -6 7 1595 192 77 0 0 chr3 132429021 132429047 -27170736 + (CG)n Simple_repeat Simple_repeat 2 27 0 7 1595 180 0 0 0 chr3 132429047 132429066 -27170717 + (CA)n Simple_repeat Simple_repeat 1 20 0 7 1595 405 0 0 0 chr3 132430196 132430241 -27169542 + (TG)n Simple_repeat Simple_repeat 1 45 0 7 1595 250 247 89 11 chr3 132430321 132430411 -27169372 - L1MCa LINE L1 -5985 523 427 7 1595 21 0 0 0 chr3 132431361 132431382 -27168401 + AT_rich Low_complexity Low_complexity 1 21 0 7 1595 1044 184 61 0 chr3 132431394 132431606 -27168177 - URR1B DNA MER1_type 0 225 1 7 1595 628 299 22 47 chr3 132431876 132432156 -27167627 + Lx7 LINE L1 7052 7345 -128 7 1595 423 0 0 0 chr3 132432156 132432203 -27167580 + (GTTTG)n Simple_repeat Simple_repeat 3 49 0 7 1595 465 330 60 55 chr3 132432203 132432328 -27167455 + Lx7 LINE L1 7346 7471 -2 7 1595 686 206 126 32 chr3 132432429 132432619 -27167164 + B3 SINE B2 2 209 -7 7 1595 234 336 47 0 chr3 132432770 132432877 -27166906 - L1ME2 LINE L1 -28 6136 6025 7 1595 465 338 200 9 chr3 132433027 132433447 -27166336 - MER76 LTR ERVL -6 685 185 7 1595 440 77 15 0 chr3 132434300 132434365 -27165418 + (TTA)n Simple_repeat Simple_repeat 3 68 0 7 1595 304 365 154 42 chr3 132434454 132434791 -27164992 + HAL1 LINE L1 1529 1903 -604 7 1595 211 276 97 69 chr3 132435916 132436060 -27163723 + MIR SINE MIR 109 256 -6 7 1595 1081 214 10 0 chr3 132438555 132438761 -27161022 - B3 SINE B2 -8 208 1 7 1595 21 0 0 0 chr3 132438815 132438836 -27160947 + AT_rich Low_complexity Low_complexity 1 21 0 7 1595 451 231 48 0 chr3 132438965 132439069 -27160714 - PB1D9 SINE Alu -11 109 1 7 1595 276 293 129 127 chr3 132439226 132439597 -27160186 - MTEa LTR MaLR -7 372 1 7 1595 301 212 82 20 chr3 132441385 132441531 -27158252 - L1M2a LINE L1 -3952 3212 3052 7 1595 399 145 43 0 chr3 132441543 132441612 -27158171 - HAL1-3A_ME LINE L1 -812 2046 1975 7 1595 206 256 0 0 chr3 132441612 132441655 -27158128 + (TATG)n Simple_repeat Simple_repeat 2 44 0 7 1595 311 292 60 32 chr3 132441702 132441950 -27157833 - L1M2a LINE L1 -4965 2203 1949 7 1595 394 264 46 20 chr3 132443166 132443317 -27156466 - L1_Mm LINE L1 -4011 1872 1718 7 1595 507 17 0 0 chr3 132446822 132446882 -27152901 + (TG)n Simple_repeat Simple_repeat 1 60 0 7 1595 351 0 0 0 chr3 132446882 132446920 -27152863 + (GA)n Simple_repeat Simple_repeat 1 39 0 7 1595 1489 80 16 16 chr3 132447006 132447196 -27152587 - B2_Mm2 SINE B2 -5 190 1 7 1595 300 326 81 13 chr3 132447656 132447805 -27151978 - RSINE1 SINE B4 -2 163 5 7 1595 219 69 0 0 chr3 132447897 132447926 -27151857 + (T)n Simple_repeat Simple_repeat 1 29 0 7 1595 808 148 174 0 chr3 132448047 132448202 -27151581 - MTC LTR MaLR -55 366 185 7 1595 522 235 21 42 chr3 132448204 132448346 -27151437 - L1_Mur3 LINE L1 -1898 3982 3844 7 1595 3574 191 38 153 chr3 132448610 132449753 -27150030 - RMER1B Other Other -11 1055 45 7 1595 694 318 90 21 chr3 132450482 132451048 -27148735 - L1MA7 LINE L1 0 6291 5687 7 1595 1236 75 20 46 chr3 132451053 132451103 -27148680 - B2_Mm1t SINE B2 -3 190 146 7 1595 5024 94 45 15 chr3 132451103 132451829 -27147954 - RMER17A LTR ERVK -3 748 1 7 1595 1236 75 20 46 chr3 132451829 132451973 -27147810 - B2_Mm1t SINE B2 -48 145 1 7 1595 624 270 89 8 chr3 132451980 132452215 -27147568 - L1M1 LINE L1 -618 5682 5429 7 1595 358 267 17 110 chr3 132452222 132452340 -27147443 - PB1D10 SINE Alu -2 115 9 7 1595 213 214 34 51 chr3 132452295 132452354 -27147429 - B4A SINE B4 -152 140 83 7 1595 244 306 37 96 chr3 132452386 132452574 -27147209 - L1M2c LINE L1 -1233 5549 5373 7 1595 1368 296 109 29 chr3 132452578 132453183 -27146600 - L1M2c LINE L1 -2313 4472 3825 7 1595 298 250 109 10 chr3 132453183 132453284 -27146499 + PB1D10 SINE Alu 5 115 -2 7 1595 1368 296 109 29 chr3 132453284 132453598 -27146185 - L1M2c LINE L1 -2961 3824 3480 7 1595 216 0 0 0 chr3 132453649 132453673 -27146110 + (GTTTG)n Simple_repeat Simple_repeat 2 25 0 7 1595 1120 63 88 0 chr3 132453673 132453832 -27145951 - B2_Mm2 SINE B2 -14 181 9 7 1595 960 173 0 20 chr3 132453875 132454028 -27145755 + B1_Mur4 SINE Alu 1 150 0 7 1595 239 295 0 13 chr3 132454239 132454318 -27145465 - ORR1A4 LTR MaLR -249 80 3 7 1595 235 304 0 68 chr3 132454449 132454523 -27145260 - L1M2c LINE L1 -3416 3369 3301 7 1595 383 284 112 26 chr3 132454574 132454726 -27145057 + B4 SINE B4 126 290 -2 7 1595 794 299 88 55 chr3 132454848 132455497 -27144286 - L1M2c LINE L1 -4674 2115 1446 7 1595 1217 255 26 21 chr3 132457636 132457928 -27141855 - MTD LTR MaLR -88 291 3 7 1595 242 381 45 0 chr3 132458805 132458939 -27140844 - MIR3 SINE MIR -5 203 64 7 1595 279 0 0 0 chr3 132460108 132460139 -27139644 + (TG)n Simple_repeat Simple_repeat 1 31 0 7 1595 258 156 0 0 chr3 132460166 132460211 -27139572 + (CATATA)n Simple_repeat Simple_repeat 2 46 0 7 1595 278 360 22 0 chr3 132460529 132460618 -27139165 + PB1D10 SINE Alu 3 93 -24 7 1595 418 282 72 11 chr3 132460641 132460865 -27138918 + B4 SINE B4 1 291 -1 7 1595 880 155 28 0 chr3 132461430 132461572 -27138211 + B1_Mur3 SINE Alu 4 149 0 7 1595 1249 226 40 32 chr3 132461576 132461947 -27137836 + RMER1B Other Other 475 815 -251 7 1595 225 174 0 80 chr3 132462391 132462441 -27137342 + RMER1A Other Other 708 753 -277 7 1595 225 174 0 80 chr3 132462641 132462691 -27137092 + RMER1A Other Other 708 753 -277 7 1595 244 152 0 80 chr3 132462791 132462841 -27136942 + RMER1B Other Other 770 815 -251 7 1595 244 152 0 80 chr3 132462891 132462941 -27136842 + RMER1B Other Other 770 815 -251 7 1595 1267 158 69 59 chr3 132462941 132463231 -27136552 + RMER1B Other Other 770 1062 -4 7 1595 315 274 96 0 chr3 132463978 132464051 -27135732 - ID4_ SINE ID -1 82 3 7 1595 501 115 0 0 chr3 132464869 132464947 -27134836 + (TG)n Simple_repeat Simple_repeat 1 78 0 7 1595 541 262 34 14 chr3 132465032 132465205 -27134578 - B3 SINE B2 -9 184 2 7 1595 711 234 27 14 chr3 132465565 132465712 -27134071 - B1_Mur1 SINE Alu 0 149 1 7 1595 826 246 32 108 chr3 132466003 132466317 -27133466 + B4A SINE B4 3 292 0 7 1595 342 0 0 0 chr3 132466326 132466364 -27133419 + (CAGA)n Simple_repeat Simple_repeat 4 41 0 7 1595 599 324 59 5 chr3 132466625 132466811 -27132972 - B3A SINE B2 -2 196 1 7 1595 306 301 52 17 chr3 132466867 132466982 -27132801 - PB1D9 SINE Alu -1 119 1 7 1595 291 238 0 0 chr3 132468094 132468157 -27131626 - PB1D9 SINE Alu -56 64 2 7 1595 280 352 49 8 chr3 132468157 132468280 -27131503 - L2a LINE L2 -342 3084 2957 7 1595 28 48 0 0 chr3 132468897 132468939 -27130844 + AT_rich Low_complexity Low_complexity 1 42 0 7 1595 713 232 28 14 chr3 132469116 132469260 -27130523 - RSINE1 SINE B4 -17 148 3 7 1595 5699 117 64 16 chr3 132469967 132470882 -27128901 - Lx LINE L1 -1 6653 5716 7 1595 1126 106 0 16 chr3 132472422 132472605 -27127178 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 7 1595 290 178 41 0 chr3 132472627 132472700 -27127083 + (ATGGTG)n Simple_repeat Simple_repeat 1 76 0 7 1595 231 206 65 28 chr3 132473238 132473315 -27126468 + B1F SINE Alu 11 93 -56 7 1595 1186 120 17 33 chr3 132473900 132474081 -27125702 + B2_Mm2 SINE B2 2 179 -16 7 1595 291 210 0 16 chr3 132474308 132474371 -27125412 - MTEa LTR MaLR -1 378 317 7 1595 219 329 0 0 chr3 132474709 132474782 -27125001 + (TA)n Simple_repeat Simple_repeat 2 74 0 7 1595 1002 281 56 97 chr3 132474800 132475190 -27124593 + MTE2b LTR MaLR 6 379 0 7 1595 423 0 0 0 chr3 132477580 132477627 -27122156 + (TG)n Simple_repeat Simple_repeat 1 47 0 7 1595 534 103 0 0 chr3 132479165 132479243 -27120540 + (GA)n Simple_repeat Simple_repeat 1 78 0 7 1595 627 206 71 0 chr3 132479272 132479398 -27120385 + B1_Mur2 SINE Alu 10 144 -5 7 1595 486 145 5 158 chr3 132479446 132479667 -27120116 + RMER17C LTR ERVK 91 277 -133 7 1595 563 233 60 0 chr3 132480111 132480227 -27119556 + RSINE1 SINE B4 4 126 -39 7 1595 479 45 15 0 chr3 132480227 132480293 -27119490 + (TG)n Simple_repeat Simple_repeat 1 67 0 7 1595 414 184 148 52 chr3 132480401 132480516 -27119267 + MTE2b LTR MaLR 237 362 -17 7 1595 2814 72 9 3 chr3 132480517 132480899 -27118884 + L1_Mus1 LINE L1 6209 6567 0 7 1595 194 23 22 65 chr3 132481634 132481680 -27118103 + (TAA)n Simple_repeat Simple_repeat 3 46 0 7 1595 240 336 95 38 chr3 132482258 132482416 -27117367 + MIRb SINE MIR 49 215 -53 7 1595 963 259 75 11 chr3 132482710 132483070 -27116713 + L1M2 LINE L1 2593 2975 -3168 7 1595 351 272 307 13 chr3 132483091 132483550 -27116233 + L1M2 LINE L1 3813 4406 -1737 7 1595 855 288 47 18 chr3 132483553 132483832 -27115951 + B4A SINE B4 2 288 -4 7 1595 820 261 229 32 chr3 132483841 132484379 -27115404 + L1MA6 LINE L1 5651 6294 -6 7 1595 584 279 112 28 chr3 132484376 132484784 -27114999 + L1M2 LINE L1 4374 4811 -1332 7 1595 291 286 64 64 chr3 132484954 132485126 -27114657 - CYRA11_Mm Unknown Y-chromosome -274 343 172 7 1595 777 183 7 0 chr3 132484985 132485127 -27114656 + URR1B DNA MER1_type 83 225 0 7 1595 38829 30 0 0 chr3 132485322 132491971 -27107812 - L1Md_T LINE L1 0 6585 1 7 1595 252 200 0 0 chr3 132492057 132492122 -27107661 + (CA)n Simple_repeat Simple_repeat 2 66 0 7 1595 561 188 97 18 chr3 132493112 132493226 -27106557 + B1_Mur4 SINE Alu 3 125 -25 7 1595 324 0 0 0 chr3 132493231 132493267 -27106516 + (CA)n Simple_repeat Simple_repeat 2 37 0 7 1595 285 29 0 0 chr3 132493268 132493302 -27106481 + (GA)n Simple_repeat Simple_repeat 1 34 0 7 1595 657 251 11 60 chr3 132493304 132493486 -27106297 - MLT1A0 LTR MaLR -62 303 131 7 1595 328 265 0 0 chr3 132493486 132493554 -27106229 + ID4 SINE ID 3 70 -13 7 1595 405 0 0 0 chr3 132495520 132495565 -27104218 + (TG)n Simple_repeat Simple_repeat 1 45 0 8 1595 221 304 75 21 chr3 132495581 132495675 -27104108 - PB1D10 SINE Alu -6 111 13 8 1595 1559 72 0 5 chr3 132496823 132497018 -27102765 - B2_Mm2 SINE B2 0 195 2 8 1595 482 291 152 37 chr3 132497450 132497746 -27102037 - MTEb LTR MaLR -49 330 1 8 1595 286 295 52 44 chr3 132498790 132498925 -27100858 - MER5B DNA MER1_type -3 175 40 8 1595 1157 239 93 13 chr3 132501754 132502140 -27097643 + Lx7 LINE L1 7078 7494 -202 1 1595 261 75 0 0 chr3 132502220 132502260 -27097523 + (T)n Simple_repeat Simple_repeat 1 40 0 2 1595 1239 28 0 0 chr3 132502260 132502405 -27097378 - B1_Mm SINE Alu 0 147 3 3 1595 242 218 0 65 chr3 132502464 132502557 -27097226 + GA-rich Low_complexity Low_complexity 4 90 0 4 1595 616 214 39 13 chr3 132503222 132503378 -27096405 - B4 SINE B4 -129 163 4 5 1595 392 266 84 28 chr3 132503395 132503538 -27096245 - L1MB7 LINE L1 -26 6158 6008 6 1595 274 254 30 0 chr3 132503561 132503628 -27096155 - L1M3 LINE L1 -1152 4988 4920 7 1595 1300 276 33 3 chr3 132504153 132504513 -27095270 + MTE2b LTR MaLR 1 371 -8 8 1595 249 327 8 15 chr3 132506043 132506214 -27093569 + GA-rich Low_complexity Low_complexity 1 169 0 9 1595 489 34 0 0 chr3 132507320 132507379 -27092404 + (TC)n Simple_repeat Simple_repeat 1 59 0 1 1595 1033 122 73 0 chr3 132507543 132507707 -27092076 + B2_Mm2 SINE B2 1 176 -19 1 1595 678 13 0 0 chr3 132507947 132508026 -27091757 + (GGAA)n Simple_repeat Simple_repeat 1 79 0 1 1595 4188 48 9 19 chr3 132508336 132508865 -27090918 - L1Md_F3 LINE L1 -12 6572 6049 1 1595 438 329 34 0 chr3 132509863 132510012 -27089771 + MER63B DNA AcHobo 279 432 -4 1 1595 1361 235 52 36 chr3 132510927 132511289 -27088494 - ORR1D2 LTR MaLR 0 370 3 1 1595 632 216 152 90 chr3 132511377 132511687 -27088096 + L1MA4 LINE L1 5546 5874 -426 1 1595 24 0 0 0 chr3 132512994 132513018 -27086765 + AT_rich Low_complexity Low_complexity 1 24 0 1 1595 293 297 0 13 chr3 132513102 132513177 -27086606 - RSINE1 SINE B4 -87 78 5 1 1596 180 0 0 0 chr3 132513809 132513829 -27085954 + (CAA)n Simple_repeat Simple_repeat 2 21 0 1 1596 209 305 0 50 chr3 132514578 132514678 -27085105 + G-rich Low_complexity Low_complexity 5 99 0 2 1596 196 278 42 0 chr3 132515164 132515236 -27084547 + MIRb SINE MIR 123 197 -71 2 1596 505 177 0 17 chr3 132516327 132516442 -27083341 + T-rich Low_complexity Low_complexity 2 114 0 2 1596 496 246 17 9 chr3 132516449 132516564 -27083219 - B1_Mur1 SINE Alu -32 117 2 2 1596 306 255 0 102 chr3 132516462 132516580 -27083203 - MT2B LTR ERVL -344 257 152 2 1596 199 316 13 0 chr3 132516694 132516773 -27083010 + MIRb SINE MIR 63 142 -126 2 1596 342 0 0 0 chr3 132518915 132518953 -27080830 + (TG)n Simple_repeat Simple_repeat 1 38 0 2 1596 334 267 34 25 chr3 132520240 132520359 -27079424 + MER53 DNA hAT 73 192 -1 2 1596 213 121 0 0 chr3 132520501 132520534 -27079249 + (CTCA)n Simple_repeat Simple_repeat 1 33 0 2 1596 432 0 0 0 chr3 132521318 132521366 -27078417 + (TAAAAA)n Simple_repeat Simple_repeat 4 51 0 2 1596 1213 54 24 0 chr3 132521368 132521535 -27078248 + B2_Mm2 SINE B2 2 172 -23 3 1596 187 286 71 12 chr3 132524021 132524106 -27075677 + MIRc SINE MIR 30 119 -149 3 1596 210 292 134 34 chr3 132526953 132527102 -27072681 + MIRb SINE MIR 88 251 -17 3 1596 976 120 8 13 chr3 132529092 132529327 -27070456 + (TATG)n Simple_repeat Simple_repeat 1 233 0 3 1596 285 146 0 0 chr3 132532994 132533042 -27066741 + (A)n Simple_repeat Simple_repeat 1 48 0 3 1596 672 176 264 23 chr3 132535367 132535541 -27064242 + B3 SINE B2 1 216 0 3 1596 544 234 8 31 chr3 132535713 132535825 -27063958 + B4 SINE B4 157 269 -23 3 1596 375 41 0 0 chr3 132535825 132535874 -27063909 + (CA)n Simple_repeat Simple_repeat 2 50 0 3 1596 544 234 8 31 chr3 132535874 132535889 -27063894 + B4 SINE B4 270 281 -11 3 1596 24 0 0 0 chr3 132536624 132536648 -27063135 + AT_rich Low_complexity Low_complexity 1 24 0 3 1596 239 290 81 130 chr3 132537054 132537339 -27062444 + MLT1E1 LTR MaLR 359 629 -25 3 1596 754 185 0 0 chr3 132537340 132537470 -27062313 + B1_Mur1 SINE Alu 20 149 0 4 1596 281 271 74 117 chr3 132537506 132537637 -27062146 + B4A SINE B4 94 217 -75 4 1596 279 0 0 0 chr3 132537637 132537668 -27062115 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 4 1596 281 271 74 117 chr3 132537668 132537699 -27062084 + B4A SINE B4 218 249 -43 4 1596 418 294 25 8 chr3 132537689 132537809 -27061974 + RSINE1 SINE B4 24 145 -20 4 1596 441 76 0 0 chr3 132537815 132537881 -27061902 + (CAGA)n Simple_repeat Simple_repeat 1 66 0 4 1596 810 149 168 74 chr3 132538286 132538489 -27061294 + URR1B DNA MER1_type 1 222 -3 4 1596 216 0 0 0 chr3 132540262 132540286 -27059497 + (CA)n Simple_repeat Simple_repeat 2 25 0 4 1596 204 241 157 0 chr3 132541412 132541495 -27058288 - MER5A DNA MER1_type -56 133 38 4 1596 270 0 0 0 chr3 132541848 132541878 -27057905 + (CTAA)n Simple_repeat Simple_repeat 3 32 0 4 1596 288 154 0 0 chr3 132542974 132543026 -27056757 + CT-rich Low_complexity Low_complexity 5 56 0 4 1596 278 301 24 81 chr3 132543058 132543181 -27056602 - PB1D10 SINE Alu -1 116 1 5 1596 297 284 0 33 chr3 132543402 132543493 -27056290 + MER5A1 DNA MER1_type 1 88 -78 5 1596 363 201 0 29 chr3 132545665 132545806 -27053977 + GA-rich Low_complexity Low_complexity 1 136 0 5 1596 670 267 18 9 chr3 132545883 132546102 -27053681 - L3b LINE CR1 -229 253 33 5 1596 30 0 0 0 chr3 132548175 132548205 -27051578 + AT_rich Low_complexity Low_complexity 1 30 0 5 1596 180 0 0 0 chr3 132549549 132549569 -27050214 + (A)n Simple_repeat Simple_repeat 1 20 0 5 1596 198 0 0 0 chr3 132549779 132549801 -27049982 + (CACCAT)n Simple_repeat Simple_repeat 1 22 0 5 1596 233 0 62 0 chr3 132550058 132550090 -27049693 + (TAAAA)n Simple_repeat Simple_repeat 2 35 0 5 1596 189 0 0 0 chr3 132551545 132551566 -27048217 + (TTTTG)n Simple_repeat Simple_repeat 4 24 0 5 1596 724 187 7 7 chr3 132552454 132552589 -27047194 - B1_Mus1 SINE Alu -8 140 6 5 1596 22 0 0 0 chr3 132552704 132552726 -27047057 + AT_rich Low_complexity Low_complexity 1 22 0 6 1596 180 0 0 0 chr3 132554475 132554495 -27045288 + (TTGG)n Simple_repeat Simple_repeat 1 20 0 6 1596 601 297 23 6 chr3 132554714 132554890 -27044893 + B4A SINE B4 54 232 -60 6 1596 207 264 0 19 chr3 132554908 132554962 -27044821 + (CTG)n Simple_repeat Simple_repeat 1 53 0 6 1596 260 49 49 0 chr3 132555141 132555182 -27044601 + (CAAAA)n Simple_repeat Simple_repeat 2 44 0 6 1596 245 278 27 27 chr3 132555191 132555265 -27044518 + B4A SINE B4 217 290 -2 6 1596 218 143 20 0 chr3 132555271 132555320 -27044463 + (CA)n Simple_repeat Simple_repeat 1 50 0 6 1596 378 0 0 0 chr3 132555898 132555940 -27043843 + (CA)n Simple_repeat Simple_repeat 1 42 0 6 1596 417 263 43 36 chr3 132556407 132556545 -27043238 - LTR83 LTR ERVL -6 774 636 6 1596 546 16 0 0 chr3 132556698 132556761 -27043022 + (CA)n Simple_repeat Simple_repeat 1 63 0 6 1596 303 301 148 0 chr3 132556831 132557034 -27042749 - LTR83 LTR ERVL -418 362 130 6 1596 645 207 7 0 chr3 132558922 132559057 -27040726 + B1_Mur1 SINE Alu 6 141 -8 6 1596 528 122 0 0 chr3 132559092 132559174 -27040609 + (TGGA)n Simple_repeat Simple_repeat 4 85 0 7 1596 349 326 51 0 chr3 132561917 132562055 -27037728 + MER5A1 DNA MER1_type 1 145 -21 7 1596 979 138 175 5 chr3 132563518 132563707 -27036076 + URR1B DNA MER1_type 5 225 0 7 1596 739 249 122 53 chr3 132566016 132566279 -27033504 + B4 SINE B4 1 281 -11 7 1596 348 83 0 0 chr3 132566302 132566350 -27033433 + (CA)n Simple_repeat Simple_repeat 1 48 0 7 1596 671 227 129 5 chr3 132567395 132567581 -27032202 + B3 SINE B2 3 211 -5 7 1596 763 197 120 21 chr3 132570237 132570429 -27029354 - B3 SINE B2 -5 211 1 7 1596 250 374 23 0 chr3 132570576 132570707 -27029076 + L2b LINE L2 3240 3373 -2 7 1596 192 328 16 70 chr3 132570788 132570916 -27028867 - MIRb SINE MIR -110 158 38 7 1596 707 237 142 0 chr3 132572107 132572250 -27027533 + ID_B1 SINE B4 2 162 -62 7 1596 918 52 0 0 chr3 132572250 132572366 -27027417 + (TA)n Simple_repeat Simple_repeat 2 117 0 8 1596 707 237 142 0 chr3 132572366 132572412 -27027371 + ID_B1 SINE B4 163 217 -7 7 1596 261 0 0 0 chr3 132573518 132573547 -27026236 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 8 1596 1212 153 94 108 chr3 132575057 132575364 -27024419 + RMER1C Other Other 1039 1341 -1 8 1596 197 270 111 0 chr3 132579749 132579812 -27019971 + MIRc SINE MIR 80 149 -119 8 1596 372 94 0 0 chr3 132579926 132579979 -27019804 + (TATG)n Simple_repeat Simple_repeat 2 54 0 8 1596 503 313 7 33 chr3 132580024 132580176 -27019607 - RSINE1 SINE B4 -15 150 3 8 1596 420 37 0 0 chr3 132581576 132581630 -27018153 + (TG)n Simple_repeat Simple_repeat 2 55 0 8 1596 777 269 6 6 chr3 132581635 132581803 -27017980 - B3A SINE B2 -30 168 1 8 1596 675 293 13 0 chr3 132582850 132583007 -27016776 + RSINE1 SINE B4 6 164 -1 8 1596 227 338 0 24 chr3 132584139 132584221 -27015562 + MLT1J LTR MaLR 101 180 -332 8 1596 432 0 0 0 chr3 132584263 132584311 -27015472 + (CAAAAA)n Simple_repeat Simple_repeat 3 50 0 9 1596 935 107 67 1 chr3 132586941 132587110 -27012673 + B2_Mm2 SINE B2 2 182 -11 9 1596 228 361 14 36 chr3 132587379 132587517 -27012266 + L1MC4 LINE L1 6894 7028 -1014 9 1596 531 74 0 0 chr3 132587855 132587936 -27011847 + (GA)n Simple_repeat Simple_repeat 2 82 0 9 1596 258 32 0 0 chr3 132588836 132588867 -27010916 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 9 1596 279 0 0 0 chr3 132589683 132589714 -27010069 + (CAGA)n Simple_repeat Simple_repeat 2 32 0 9 1596 360 0 0 0 chr3 132589714 132589754 -27010029 + (TA)n Simple_repeat Simple_repeat 2 41 0 9 1596 2148 37 0 69 chr3 132589937 132590228 -27009555 - L1_Mus2 LINE L1 0 6566 6296 9 1596 403 266 26 17 chr3 132590231 132590346 -27009437 - PB1D9 SINE Alu -2 118 3 9 1596 238 314 9 38 chr3 132591330 132591436 -27008347 - MIRb SINE MIR -32 236 134 9 1596 181 273 0 52 chr3 132592710 132592768 -27007015 + L2c LINE L2 3289 3343 -44 1 1596 881 249 186 3 chr3 132593143 132593470 -27006313 + Lx9 LINE L1 7256 7642 -2 1 1596 353 309 22 93 chr3 132593487 132593626 -27006157 + B1F SINE Alu 2 130 -19 1 1596 727 66 19 0 chr3 132593677 132593783 -27006000 + (GAGAA)n Simple_repeat Simple_repeat 3 110 0 1 1596 596 265 13 64 chr3 132594882 132595039 -27004744 - RSINE1 SINE B4 0 165 17 1 1596 224 204 18 36 chr3 132595808 132595864 -27003919 + (CATG)n Simple_repeat Simple_repeat 4 58 0 1 1596 643 293 65 40 chr3 132595866 132596143 -27003640 - B4A SINE B4 -7 285 2 1 1596 435 331 6 71 chr3 132597249 132597431 -27002352 + ID_B1 SINE B4 7 176 -48 1 1596 369 0 0 0 chr3 132598282 132598323 -27001460 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 1596 1095 224 0 0 chr3 132598585 132598790 -27000993 + B3 SINE B2 1 205 -11 1 1596 31 44 0 0 chr3 132598792 132598837 -27000946 + AT_rich Low_complexity Low_complexity 1 45 0 1 1596 313 202 56 0 chr3 132598857 132598946 -27000837 + Lx7 LINE L1 7602 7695 -1 1 1596 551 222 36 15 chr3 132599106 132599243 -27000540 - B1_Mur4 SINE Alu 0 150 11 1 1596 186 43 0 0 chr3 132600447 132600470 -26999313 + (GGGA)n Simple_repeat Simple_repeat 2 24 0 1 1596 482 231 0 19 chr3 132602836 132602942 -26996841 + U6 snRNA snRNA 4 107 0 1 1596 297 0 0 0 chr3 132603796 132603829 -26995954 + (TG)n Simple_repeat Simple_repeat 1 33 0 1 1596 2726 149 87 2 chr3 132604238 132604742 -26995041 + RLTR12A LTR ERVK 1 547 -21 1 1596 241 270 0 0 chr3 132604856 132604919 -26994864 + BC1_Mm scRNA scRNA 16 78 -74 1 1596 2857 59 0 16 chr3 132604965 132605344 -26994439 - L1Md_F2 LINE L1 0 6582 6210 1 1596 2334 45 3 0 chr3 132606251 132606537 -26993246 - L1_Mus1 LINE L1 0 6567 6281 1 1596 338 337 26 1 chr3 132608210 132608354 -26991429 - MIR SINE MIR -117 151 3 1 1596 1385 89 16 5 chr3 132609959 132610152 -26989631 + B2_Mm2 SINE B2 1 195 0 1 1596 279 128 0 0 chr3 132610155 132610194 -26989589 + (GA)n Simple_repeat Simple_repeat 2 40 0 1 1596 1017 153 0 0 chr3 132610194 132610370 -26989413 + GA-rich Low_complexity Low_complexity 3 178 0 1 1596 279 128 0 0 chr3 132610370 132610377 -26989406 + (GA)n Simple_repeat Simple_repeat 1 7 0 1 1596 795 150 187 11 chr3 132610580 132610762 -26989021 + B3 SINE B2 1 214 -2 1 1596 351 0 0 0 chr3 132610938 132610977 -26988806 + (CA)n Simple_repeat Simple_repeat 1 39 0 1 1596 21 0 0 0 chr3 132611124 132611145 -26988638 + AT_rich Low_complexity Low_complexity 1 21 0 1 1596 186 43 0 0 chr3 132611632 132611655 -26988128 + (TCC)n Simple_repeat Simple_repeat 1 23 0 1 1596 340 111 0 0 chr3 132611879 132611933 -26987850 - HAL1-3A_ME LINE L1 -829 2029 1976 1 1596 243 0 0 0 chr3 132611961 132611988 -26987795 + (TG)n Simple_repeat Simple_repeat 2 28 0 1 1596 339 25 0 0 chr3 132612564 132612604 -26987179 + (CA)n Simple_repeat Simple_repeat 2 41 0 1 1596 39 104 0 0 chr3 132613189 132613333 -26986450 + GC_rich Low_complexity Low_complexity 1 144 0 1 1596 282 282 189 13 chr3 132614210 132614361 -26985422 + L2a LINE L2 3216 3417 -9 1 1596 195 69 0 0 chr3 132614927 132614956 -26984827 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1 1596 1505 204 202 23 chr3 132615377 132615858 -26983925 - RMER2 LTR ERV1 0 567 1 1 1596 391 219 0 14 chr3 132615925 132615999 -26983784 - ID4_ SINE ID -10 73 1 1 1596 681 297 75 37 chr3 132616473 132616795 -26982988 - MLT1J-int LTR MaLR -555 832 499 1 1596 247 337 84 6 chr3 132616808 132616987 -26982796 - MLT1J-int LTR MaLR -969 418 226 1 1596 1105 93 91 23 chr3 132617243 132617419 -26982364 - B2_Mm2 SINE B2 -7 188 1 1 1596 413 296 169 4 chr3 132617470 132617718 -26982065 - LTR87 LTR ERVL? -13 611 323 1 1596 446 325 7 7 chr3 132617814 132617969 -26981814 - LTR87 LTR ERVL? -457 167 13 1 1596 2146 161 23 42 chr3 132618228 132618691 -26981092 - RLTR11A2 LTR ERVK 0 527 1 1 1596 519 249 45 95 chr3 132618741 132618914 -26980869 + B3A SINE B2 1 170 -28 1 1596 420 20 0 0 chr3 132618914 132618963 -26980820 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 1596 338 249 45 95 chr3 132618963 132618989 -26980794 + B2_Mm2 SINE B2 166 190 -5 1 1596 320 345 17 17 chr3 132619012 132619127 -26980656 + PB1 SINE Alu 13 127 0 1 1596 1337 256 14 33 chr3 132619824 132620184 -26979599 + MTE2b LTR MaLR 18 370 -9 1 1596 841 215 64 20 chr3 132621372 132621576 -26978207 - B3 SINE B2 -3 213 1 1 1596 21 36 0 0 chr3 132621790 132621818 -26977965 + AT_rich Low_complexity Low_complexity 1 28 0 1 1596 542 239 8 23 chr3 132621841 132621974 -26977809 - RSINE1 SINE B4 -31 134 4 1 1596 292 309 21 0 chr3 132622131 132622225 -26977558 + PB1 SINE Alu 1 96 -31 1 1596 307 272 22 67 chr3 132623262 132623396 -26976387 - MIRb SINE MIR -126 142 15 1 1596 222 276 17 0 chr3 132624077 132624135 -26975648 + (CA)n Simple_repeat Simple_repeat 2 60 0 1 1596 1267 146 43 22 chr3 132624135 132624413 -26975370 + ORR1A4 LTR MaLR 3 329 0 1 1596 648 299 5 53 chr3 132625016 132625224 -26974559 - ID_B1 SINE B4 -18 206 9 1 1596 385 283 45 70 chr3 132625282 132625438 -26974345 - RSINE1 SINE B4 -6 159 8 1 1596 307 281 9 37 chr3 132626312 132626419 -26973364 + PB1D10 SINE Alu 12 115 -2 1 1596 917 226 33 24 chr3 132626622 132626835 -26972948 - B3 SINE B2 0 216 2 1 1596 287 250 69 0 chr3 132626887 132626959 -26972824 + B3 SINE B2 1 77 -139 1 1596 234 0 0 0 chr3 132626962 132626988 -26972795 + (TC)n Simple_repeat Simple_repeat 1 26 0 1 1596 279 0 0 0 chr3 132626988 132627018 -26972765 + (CA)n Simple_repeat Simple_repeat 1 31 0 1 1596 711 160 0 0 chr3 132627464 132627620 -26972163 + (TA)n Simple_repeat Simple_repeat 2 157 0 1 1596 198 312 60 48 chr3 132628688 132628772 -26971011 - L2b LINE L2 -18 3357 3273 1 1596 297 0 0 0 chr3 132628980 132629013 -26970770 + (TG)n Simple_repeat Simple_repeat 1 33 0 1 1596 1727 175 55 0 chr3 132629284 132629632 -26970151 - ORR1C1 LTR MaLR -11 367 1 1 1596 6756 66 0 2 chr3 132629970 132630821 -26968962 - Lx3_Mus LINE L1 0 7009 6161 1 1596 230 255 94 21 chr3 132631506 132631602 -26968181 + ORR1E LTR MaLR 235 337 -22 1 1596 2156 124 35 0 chr3 132632311 132632625 -26967158 + ORR1A2 LTR MaLR 3 327 0 1 1596 221 264 19 0 chr3 132633259 132633312 -26966471 + CT-rich Low_complexity Low_complexity 4 57 0 1 1596 344 245 50 83 chr3 132633324 132633444 -26966339 - PB1 SINE Alu -7 120 5 1 1596 708 275 178 60 chr3 132633590 132633787 -26965996 - MTD LTR MaLR -13 406 180 1 1596 5457 114 38 5 chr3 132633787 132634613 -26965170 - Lx4A LINE L1 -1 7057 6205 1 1596 708 275 178 60 chr3 132634613 132634763 -26965020 - MTD LTR MaLR -240 179 18 1 1596 285 29 0 0 chr3 132634829 132634863 -26964920 + (TG)n Simple_repeat Simple_repeat 2 35 0 1 1596 346 273 58 109 chr3 132635515 132635671 -26964112 + RSINE1 SINE B4 3 150 -15 1 1596 248 204 20 0 chr3 132636241 132636290 -26963493 + ID4 SINE ID 24 73 -10 1 1596 763 213 0 7 chr3 132638285 132638427 -26961356 + B1_Mur3 SINE Alu 1 141 -8 1 1596 288 0 0 0 chr3 132638471 132638503 -26961280 + (CA)n Simple_repeat Simple_repeat 2 33 0 1 1596 501 239 50 36 chr3 132638750 132638889 -26960894 - B1_Mur2 SINE Alu -6 143 3 1 1596 933 180 144 12 chr3 132638894 132639170 -26960613 - ORR1D1 LTR MaLR -5 379 9 1 1596 4711 67 63 3 chr3 132639209 132639842 -26959941 + Lx3_Mus LINE L1 6339 7009 0 1 1596 243 0 0 0 chr3 132640174 132640201 -26959582 + (A)n Simple_repeat Simple_repeat 1 27 0 1 1596 638 250 121 6 chr3 132640455 132640612 -26959171 + B3 SINE B2 3 177 -39 1 1596 2097 143 128 54 chr3 132640717 132640906 -26958877 + RMER6C LTR ERVK 112 332 -358 1 1596 888 98 0 0 chr3 132640906 132641039 -26958744 + (GGGAGA)n Simple_repeat Simple_repeat 2 134 0 1 1596 2097 143 128 54 chr3 132641039 132641388 -26958395 + RMER6C LTR ERVK 333 690 0 1 1596 32 67 0 0 chr3 132641462 132641522 -26958261 + AT_rich Low_complexity Low_complexity 1 60 0 1 1596 1066 64 50 0 chr3 132641635 132641776 -26958007 - B1_Mus1 SINE Alu 0 148 1 1 1596 724 271 87 16 chr3 132641915 132642161 -26957622 + MTE-int LTR MaLR 800 1056 -524 1 1596 260 241 0 0 chr3 132642152 132642206 -26957577 + MTD LTR MaLR 312 365 -54 1 1596 2075 219 166 103 chr3 132642229 132643071 -26956712 + MTC-int LTR MaLR 246 1140 -118 1 1596 243 236 0 0 chr3 132643072 132643127 -26956656 + MMSAT4 Satellite Satellite 114 168 0 1 1596 505 225 48 92 chr3 132643140 132643346 -26956437 - B3A SINE B2 -1 197 1 1 1596 1855 224 125 2 chr3 132643858 132644354 -26955429 + Lx7 LINE L1 6808 7364 -332 1 1596 213 150 0 24 chr3 132644354 132644395 -26955388 + CT-rich Low_complexity Low_complexity 1 40 0 1 1596 313 191 191 0 chr3 132644410 132644494 -26955289 - Lx9 LINE L1 -8 7636 7537 1 1596 265 291 13 0 chr3 132644687 132644766 -26955017 + Lx7 LINE L1 7617 7696 0 1 1597 1765 47 0 0 chr3 132647493 132647707 -26952076 - L1Md_T LINE L1 0 6582 6369 1 1597 318 330 121 14 chr3 132648392 132648607 -26951176 - MamRep137 DNA TcMar? -109 335 98 1 1597 243 0 0 0 chr3 132649622 132649649 -26950134 + (TCTG)n Simple_repeat Simple_repeat 2 28 0 1 1597 1196 68 0 0 chr3 132649668 132649815 -26949968 - B1_Mus1 SINE Alu -1 147 1 1 1597 1301 179 350 14 chr3 132650049 132650343 -26949440 + ORR1B2 LTR MaLR 1 393 -1 1 1597 267 103 0 0 chr3 132650793 132650832 -26948951 + (TTTC)n Simple_repeat Simple_repeat 2 40 0 1 1597 37217 66 11 3 chr3 132651860 132657988 -26941795 + L1Md_F2 LINE L1 382 6559 -23 1 1597 324 0 0 0 chr3 132657988 132658024 -26941759 + (TAA)n Simple_repeat Simple_repeat 1 36 0 1 1597 438 247 20 5 chr3 132658965 132659088 -26940695 + B1F SINE Alu 5 126 -22 2 1597 638 320 79 21 chr3 132659448 132659828 -26939955 - MER74A LTR ERVL -49 509 108 2 1597 486 0 0 0 chr3 132660405 132660459 -26939324 + (TCTA)n Simple_repeat Simple_repeat 3 56 0 2 1597 23 0 0 0 chr3 132660832 132660855 -26938928 + AT_rich Low_complexity Low_complexity 1 23 0 2 1597 592 211 24 0 chr3 132660868 132660991 -26938792 - B1_Mur3 SINE Alu -13 136 11 2 1597 282 263 40 59 chr3 132661088 132661189 -26938594 - PB1D10 SINE Alu -2 115 17 2 1597 324 0 0 0 chr3 132661216 132661252 -26938531 + (TA)n Simple_repeat Simple_repeat 2 37 0 2 1597 252 0 0 0 chr3 132661547 132661575 -26938208 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 2 1597 551 278 8 0 chr3 132661575 132661708 -26938075 - B1_Mus2 SINE Alu -13 134 1 2 1597 228 276 51 73 chr3 132662008 132662145 -26937638 + L1MC5 LINE L1 6771 6904 -1057 2 1597 551 311 182 15 chr3 132662581 132663089 -26936694 + MLT1E2 LTR MaLR 17 616 -8 2 1597 502 242 108 8 chr3 132663735 132663864 -26935919 + ID_B1 SINE B4 82 223 -1 2 1597 1129 283 104 21 chr3 132663966 132664493 -26935290 + Lx9 LINE L1 7006 7576 -68 2 1597 426 324 64 32 chr3 132664815 132665035 -26934748 + Tigger5 DNA MER2_type 1 227 -2179 2 1597 291 257 69 10 chr3 132665047 132665149 -26934634 + Tigger5 DNA MER2_type 2294 2401 -5 2 1597 718 178 216 0 chr3 132667653 132667838 -26931945 - URR1B DNA MER1_type 0 225 1 2 1597 360 118 0 0 chr3 132667961 132668029 -26931754 + (TA)n Simple_repeat Simple_repeat 1 68 0 2 1597 1071 261 38 38 chr3 132668841 132669159 -26930624 + ORR1E LTR MaLR 40 357 -2 2 1597 21 0 0 0 chr3 132671594 132671615 -26928168 + AT_rich Low_complexity Low_complexity 1 21 0 2 1597 414 0 0 0 chr3 132671960 132672006 -26927777 + (CCAA)n Simple_repeat Simple_repeat 2 47 0 2 1597 199 306 32 0 chr3 132673091 132673153 -26926630 - L2c LINE L2 -48 3339 3276 2 1597 2407 145 56 0 chr3 132674738 132675111 -26924672 - ORR1B1 LTR MaLR 0 394 1 2 1597 590 238 68 26 chr3 132675867 132675914 -26923869 - B3A SINE B2 0 198 149 2 1597 369 0 0 0 chr3 132675914 132675955 -26923828 + (TG)n Simple_repeat Simple_repeat 2 42 0 2 1597 590 238 68 26 chr3 132675955 132676097 -26923686 - B3A SINE B2 -50 148 1 2 1597 344 242 156 10 chr3 132676326 132676422 -26923361 - PB1D10 SINE Alu -6 111 2 2 1597 766 269 41 0 chr3 132676696 132676893 -26922890 + B3 SINE B2 3 207 -9 2 1597 949 320 35 80 chr3 132676983 132677061 -26922722 + MER44B DNA MER2_type 12 83 -467 2 1597 5351 161 12 8 chr3 132677061 132677969 -26921814 + Lx2 LINE L1 6084 6995 -2 2 1597 949 320 35 80 chr3 132677969 132678288 -26921495 + MER44B DNA MER2_type 84 391 -159 2 1597 1764 148 69 3 chr3 132678296 132678602 -26921181 + ORR1A3 LTR MaLR 1 326 0 2 1597 3876 200 137 11 chr3 132678686 132679649 -26920134 + Lx7 LINE L1 6173 7256 -440 2 1597 1945 22 0 0 chr3 132679650 132679880 -26919903 + MERVL-int LTR ERVL 3463 3692 -1793 2 1597 438 229 224 25 chr3 132679932 132680218 -26919565 + Lx7 LINE L1 7354 7696 0 2 1597 22 56 0 0 chr3 132680296 132680332 -26919451 + AT_rich Low_complexity Low_complexity 1 36 0 2 1597 1170 156 0 8 chr3 132680381 132680620 -26919163 + L1Md_F3 LINE L1 630 866 -5858 2 1597 31994 53 3 0 chr3 132680619 132684895 -26914888 + L1Md_F3 LINE L1 1296 5583 -300 2 1597 8291 33 11 0 chr3 132684898 132685885 -26913898 + L1Md_F3 LINE L1 5587 6584 0 2 1597 1380 48 5 16 chr3 132685898 132686088 -26913695 - L1_Mus4 LINE L1 -830 5806 5619 2 1597 741 94 120 7 chr3 132686095 132686245 -26913538 + Lx2 LINE L1 6831 6997 0 2 1597 2137 163 31 45 chr3 132687064 132687482 -26912301 + MTC LTR MaLR 1 412 -9 2 1597 185 420 17 0 chr3 132687774 132687893 -26911890 - L2 LINE L2 -438 2981 2861 2 1597 1248 278 270 40 chr3 132687955 132688181 -26911602 + ORR1A3-int LTR MaLR 88 373 -997 2 1597 900 248 9 0 chr3 132688181 132688391 -26911392 + B3 SINE B2 1 212 -4 2 1597 1248 280 255 40 chr3 132688391 132688981 -26910802 + ORR1A3-int LTR MaLR 374 1028 -342 2 1597 196 261 22 0 chr3 132689301 132689347 -26910436 - MIR3 SINE MIR -28 180 134 2 1597 252 114 0 0 chr3 132690675 132690710 -26909073 - U2 snRNA snRNA -153 35 1 2 1597 254 271 41 10 chr3 132690717 132690814 -26908969 - MER20B DNA MER1_type -31 752 653 2 1597 22 0 0 0 chr3 132691246 132691268 -26908515 + AT_rich Low_complexity Low_complexity 1 22 0 2 1597 245 330 129 99 chr3 132691918 132692120 -26907663 + ID_B1 SINE B4 17 224 0 2 1597 2455 132 65 7 chr3 132693424 132693472 -26906311 - RLTR16 LTR ERVK -43 462 415 2 1597 477 0 0 0 chr3 132693472 132693525 -26906258 + (CA)n Simple_repeat Simple_repeat 2 54 0 2 1597 2455 132 65 7 chr3 132693525 132693910 -26905873 - RLTR16 LTR ERVK -91 414 5 2 1597 619 229 297 5 chr3 132694300 132694519 -26905264 + B4A SINE B4 2 284 -8 2 1597 369 0 0 0 chr3 132694533 132694574 -26905209 + (CA)n Simple_repeat Simple_repeat 2 42 0 2 1597 658 242 36 3 chr3 132697185 132697350 -26902433 - ORR1C2 LTR MaLR -50 334 158 2 1597 265 111 18 36 chr3 132697367 132697423 -26902360 + GA-rich Low_complexity Low_complexity 2 56 0 2 1597 555 189 111 70 chr3 132697437 132697608 -26902175 - ORR1C2 LTR MaLR -190 194 17 2 1597 404 228 71 184 chr3 132697600 132697840 -26901943 + ORR1D2 LTR MaLR 160 374 0 2 1597 675 281 173 77 chr3 132698040 132698507 -26901276 + MLT1F2 LTR MaLR 48 559 -1 2 1597 542 280 113 7 chr3 132699126 132699277 -26900506 - B4A SINE B4 -125 167 1 2 1597 256 281 118 18 chr3 132699278 132699448 -26900335 - L1M2 LINE L1 -1375 4768 4582 2 1597 250 293 19 41 chr3 132699525 132699680 -26900103 + Lx7 LINE L1 4764 4912 -1231 2 1597 482 267 34 36 chr3 132699685 132699910 -26899873 + Lx7 LINE L1 5567 5793 -507 2 1597 679 155 6 6 chr3 132699910 132700066 -26899717 + (CA)n Simple_repeat Simple_repeat 1 156 0 2 1597 534 260 72 25 chr3 132700179 132700498 -26899285 + L1MC4 LINE L1 6895 7228 -814 2 1597 11324 109 10 16 chr3 132700530 132703192 -26896591 + L1_Mus4 LINE L1 3980 6634 -2 2 1597 4888 117 14 0 chr3 132703362 132704095 -26895688 + Lx2 LINE L1 6255 6997 0 2 1597 207 104 39 59 chr3 132704181 132704232 -26895551 + (TTTAA)n Simple_repeat Simple_repeat 1 50 0 2 1597 362 336 62 53 chr3 132704236 132704462 -26895321 + L1MC4 LINE L1 7586 7813 -229 2 1597 207 0 0 0 chr3 132705345 132705368 -26894415 + (T)n Simple_repeat Simple_repeat 1 23 0 2 1597 606 228 217 23 chr3 132706461 132706636 -26893147 + B3 SINE B2 2 210 -6 2 1597 627 94 0 0 chr3 132706951 132707047 -26892736 + (TC)n Simple_repeat Simple_repeat 1 96 0 2 1597 513 281 101 51 chr3 132707073 132707369 -26892414 + MLT1B LTR MaLR 78 388 -2 2 1597 876 234 9 53 chr3 132707660 132707886 -26891897 + B3 SINE B2 1 216 0 2 1597 2274 54 76 0 chr3 132709880 132710196 -26889587 - Lx LINE L1 -670 5984 5645 2 1597 4274 86 54 14 chr3 132710197 132710825 -26888958 + Lx LINE L1 6002 6654 0 2 1597 518 194 0 21 chr3 132711565 132711660 -26888123 + B1_Mm SINE Alu 55 147 0 2 1597 3186 68 23 14 chr3 132712181 132712615 -26887168 - L1Md_F2 LINE L1 -12 6570 6133 2 1597 459 186 18 11 chr3 132713037 132713146 -26886637 + B1_Mur1 SINE Alu 9 146 -1 2 1597 243 0 0 0 chr3 132714285 132714312 -26885471 + (TG)n Simple_repeat Simple_repeat 1 27 0 2 1597 519 17 0 0 chr3 132714312 132714371 -26885412 + (GA)n Simple_repeat Simple_repeat 1 60 0 2 1597 1002 142 20 59 chr3 132714537 132714739 -26885044 - B2_Mm2 SINE B2 0 195 2 2 1597 240 109 0 80 chr3 132716702 132716752 -26883031 + PB1D9 SINE Alu 14 59 -61 2 1597 575 178 20 0 chr3 132716809 132716910 -26882873 + B1_Mur1 SINE Alu 41 143 -6 2 1597 484 169 144 0 chr3 132716973 132717091 -26882692 + L1_Mur3 LINE L1 2825 2959 -2921 2 1597 413 198 62 31 chr3 132717077 132717207 -26882576 + L1_Mur1 LINE L1 4922 5055 -831 2 1597 1301 229 88 8 chr3 132717213 132717609 -26882174 + L1_Mur3 LINE L1 5227 5654 -226 2 1597 1416 278 243 18 chr3 132717614 132718574 -26881209 + Lx7 LINE L1 6119 7294 -402 2 1597 226 320 21 0 chr3 132718673 132718770 -26881013 + Lx7 LINE L1 7580 7678 -18 2 1597 30 27 0 0 chr3 132718770 132718807 -26880976 + AT_rich Low_complexity Low_complexity 1 37 0 2 1597 243 282 0 27 chr3 132718807 132718880 -26880903 - L1MD LINE L1 -767 5592 5522 2 1597 24 0 0 0 chr3 132719095 132719119 -26880664 + AT_rich Low_complexity Low_complexity 1 24 0 2 1597 2740 90 44 3 chr3 132719241 132719630 -26880153 - L1_Mus1 LINE L1 0 6567 6163 2 1597 196 271 51 0 chr3 132719914 132719973 -26879810 + MER5A DNA MER1_type 125 186 -3 2 1597 694 253 35 17 chr3 132721919 132722092 -26877691 + B4A SINE B4 1 176 -116 2 1597 333 253 84 0 chr3 132722140 132722223 -26877560 + B4A SINE B4 162 251 -41 2 1597 387 0 0 0 chr3 132722236 132722279 -26877504 + (CA)n Simple_repeat Simple_repeat 2 44 0 2 1597 312 364 86 0 chr3 132722291 132722431 -26877352 + RSINE1 SINE B4 3 154 -11 2 1597 399 289 77 50 chr3 132722520 132722742 -26877041 - MIR SINE MIR -1 261 34 2 1597 732 260 35 15 chr3 132723240 132723443 -26876340 - Lx8 LINE L1 -998 6475 6269 2 1597 432 252 150 0 chr3 132723522 132723649 -26876134 + B3 SINE B2 26 171 -45 2 1597 878 293 139 24 chr3 132723774 132724313 -26875470 + Lx8 LINE L1 6867 7467 -6 2 1597 344 353 70 56 chr3 132724762 132725104 -26874679 + L1MEd LINE L1 543 889 -5230 2 1597 803 270 29 0 chr3 132725872 132726076 -26873707 + B3 SINE B2 1 210 -6 2 1597 23 68 0 0 chr3 132726101 132726145 -26873638 + AT_rich Low_complexity Low_complexity 1 44 0 2 1597 36286 12 0 8 chr3 132726342 132731532 -26868251 + L1Md_A LINE L1 443 5586 -297 2 1597 8825 14 0 0 chr3 132731532 132732528 -26867255 + L1Md_A LINE L1 5587 6582 0 2 1597 325 330 36 0 chr3 132732572 132732684 -26867099 + PB1D10 SINE Alu 1 116 -1 2 1597 273 310 20 29 chr3 132732861 132732973 -26866810 + PB1 SINE Alu 1 103 -46 2 1597 1099 298 127 28 chr3 132733368 132734264 -26865519 + Lx8 LINE L1 6326 7332 -141 2 1597 291 114 0 0 chr3 132734264 132734308 -26865475 + (TG)n Simple_repeat Simple_repeat 1 44 0 2 1597 1099 321 161 25 chr3 132734308 132734348 -26865435 + Lx8 LINE L1 7333 7388 -85 2 1597 279 0 0 0 chr3 132734348 132734379 -26865404 + (CA)n Simple_repeat Simple_repeat 2 32 0 2 1597 1099 321 161 25 chr3 132734379 132734447 -26865336 + Lx8 LINE L1 7389 7467 -6 2 1597 243 262 12 0 chr3 132734455 132734539 -26865244 + L1M1 LINE L1 5814 5898 -405 2 1597 28 0 0 0 chr3 132734646 132734674 -26865109 + AT_rich Low_complexity Low_complexity 1 28 0 2 1597 257 276 0 30 chr3 132735187 132735288 -26864495 - L1MB8 LINE L1 -28 6150 6053 2 1597 386 267 59 144 chr3 132735742 132735895 -26863888 - RSINE1 SINE B4 -24 141 2 3 1597 328 272 190 6 chr3 132735895 132736058 -26863725 - L1MD LINE L1 -721 5521 5329 3 1597 1372 264 198 36 chr3 132736075 132736760 -26863023 + Lx7 LINE L1 6392 7187 -509 3 1597 494 251 89 5 chr3 132737041 132737265 -26862518 + L1MC LINE L1 5284 5526 -818 3 1597 47 19 0 0 chr3 132737887 132737941 -26861842 + AT_rich Low_complexity Low_complexity 1 54 0 3 1597 273 303 118 39 chr3 132737986 132738113 -26861670 + Tigger7 DNA MER2_type 12 148 -2343 3 1597 692 306 100 22 chr3 132738622 132738893 -26860890 + B4A SINE B4 1 292 0 3 1597 261 0 0 0 chr3 132738922 132738951 -26860832 + (CA)n Simple_repeat Simple_repeat 1 29 0 3 1597 225 83 0 0 chr3 132738976 132739012 -26860771 + (C)n Simple_repeat Simple_repeat 1 36 0 3 1597 315 306 66 91 chr3 132739326 132739567 -26860216 + L1MDa LINE L1 1749 1983 -4650 3 1597 342 308 87 58 chr3 132739869 132740954 -26858829 + L1M2 LINE L1 2208 3380 -2763 3 1597 340 274 89 87 chr3 132740954 132741114 -26858669 + B3A SINE B2 45 213 -3 3 1597 686 249 35 24 chr3 132742706 132742786 -26856997 + ID SINE ID 2 83 -141 3 1597 423 263 8 42 chr3 132742786 132742905 -26856878 + PB1D10 SINE Alu 3 117 0 3 1597 494 277 11 102 chr3 132742978 132743155 -26856628 - RSINE1 SINE B4 -1 164 4 3 1597 419 330 48 5 chr3 132743436 132743625 -26856158 + L2a LINE L2 3225 3421 -5 3 1597 27 49 0 0 chr3 132744414 132744455 -26855328 + AT_rich Low_complexity Low_complexity 1 41 0 3 1597 260 309 84 28 chr3 132744659 132744872 -26854911 - ORR1E LTR MaLR -110 249 25 3 1597 527 153 102 0 chr3 132745679 132745777 -26854006 + ORR1D1 LTR MaLR 2 109 -265 3 1597 5215 205 102 27 chr3 132745751 132747017 -26852766 + ORR1D1-int LTR MaLR 10 1370 0 3 1597 899 231 28 5 chr3 132747021 132747234 -26852549 + ORR1D1 LTR MaLR 15 232 -142 3 1597 26 0 0 0 chr3 132747347 132747373 -26852410 + AT_rich Low_complexity Low_complexity 1 26 0 3 1597 288 374 85 18 chr3 132748396 132748619 -26851164 + L2a LINE L2 2842 3079 -340 3 1597 182 280 235 28 chr3 132748637 132748854 -26850929 + L2a LINE L2 3165 3426 0 3 1597 22 35 0 0 chr3 132749385 132749414 -26850369 + AT_rich Low_complexity Low_complexity 1 29 0 3 1597 442 210 0 7 chr3 132750066 132750182 -26849601 + PB1D9 SINE Alu 2 115 -34 3 1597 264 59 0 0 chr3 132750182 132750216 -26849567 + (GGGA)n Simple_repeat Simple_repeat 4 37 0 3 1597 21 0 0 0 chr3 132750216 132750237 -26849546 + AT_rich Low_complexity Low_complexity 1 21 0 3 1597 784 44 257 0 chr3 132750260 132750373 -26849410 - B1_Mus1 SINE Alu -6 142 1 3 1597 655 182 106 0 chr3 132750568 132750700 -26849083 + B1_Mur4 SINE Alu 1 146 -4 3 1597 485 216 10 10 chr3 132750773 132750876 -26848907 + ID_B1 SINE B4 115 217 -7 3 1597 1189 61 0 0 chr3 132751000 132751147 -26848636 + B1_Mus1 SINE Alu 2 148 0 3 1597 290 250 50 0 chr3 132751322 132751382 -26848401 + B1F SINE Alu 52 114 -35 3 1597 22 0 0 0 chr3 132751446 132751468 -26848315 + AT_rich Low_complexity Low_complexity 1 22 0 3 1597 243 202 198 23 chr3 132751652 132751738 -26848045 + L2 LINE L2 2298 2398 -1021 3 1597 277 162 58 14 chr3 132751910 132751979 -26847804 + Lx5 LINE L1 6874 6945 -105 3 1597 183 42 0 0 chr3 132751980 132752004 -26847779 + (GGGGA)n Simple_repeat Simple_repeat 5 28 0 3 1597 255 169 154 0 chr3 132752005 132752070 -26847713 + Lx5 LINE L1 6976 7050 0 3 1597 252 292 14 0 chr3 132752220 132752292 -26847491 - ID4 SINE ID -10 73 1 3 1597 192 77 0 0 chr3 132753985 132754011 -26845772 + (T)n Simple_repeat Simple_repeat 1 26 0 3 1597 22 0 0 0 chr3 132757214 132757236 -26842547 + AT_rich Low_complexity Low_complexity 1 22 0 3 1597 408 118 0 0 chr3 132758439 132758507 -26841276 + (TG)n Simple_repeat Simple_repeat 2 69 0 3 1597 314 283 60 10 chr3 132759410 132759510 -26840273 + PB1D10 SINE Alu 6 110 -7 3 1597 1061 178 114 0 chr3 132760053 132760255 -26839528 + URR1B DNA MER1_type 1 225 0 3 1597 199 326 81 0 chr3 132760512 132760598 -26839185 + MIRb SINE MIR 3 95 -173 3 1597 182 200 37 74 chr3 132760687 132760741 -26839042 - MIRb SINE MIR -90 178 127 3 1597 517 292 39 13 chr3 132762146 132762302 -26837481 - RSINE1 SINE B4 -2 163 4 3 1597 335 369 62 6 chr3 132762501 132762662 -26837121 - L1M5 LINE L1 -549 5691 5522 3 1597 379 323 26 76 chr3 132762916 132763148 -26836635 - B4A SINE B4 0 292 3 3 1597 27 0 0 0 chr3 132763339 132763366 -26836417 + AT_rich Low_complexity Low_complexity 1 27 0 3 1597 267 328 66 22 chr3 132764801 132764938 -26834845 - B1F SINE Alu -6 143 1 3 1597 26 30 0 0 chr3 132766034 132766067 -26833716 + AT_rich Low_complexity Low_complexity 1 33 0 3 1597 515 178 172 9 chr3 132766372 132766519 -26833264 - L1_Mus2 LINE L1 -2 6580 6416 3 1597 400 153 0 0 chr3 132766516 132766588 -26833195 + L1_Mm LINE L1 4879 4950 -933 3 1597 573 257 118 26 chr3 132766734 132766962 -26832821 - RMER15 LTR ERVL -33 542 294 3 1597 21 0 0 0 chr3 132767250 132767271 -26832512 + AT_rich Low_complexity Low_complexity 1 21 0 3 1597 672 24 0 0 chr3 132767761 132767843 -26831940 + (CA)n Simple_repeat Simple_repeat 2 83 0 3 1597 839 241 14 28 chr3 132767843 132768061 -26831722 - MTD LTR MaLR -202 217 3 3 1597 223 265 0 0 chr3 132768080 132768129 -26831654 - ID4 SINE ID -2 81 33 3 1597 397 297 122 16 chr3 132768762 132768950 -26830833 + MER2 DNA MER2_type 17 224 -121 3 1597 261 231 61 15 chr3 132768968 132769043 -26830740 - ID4_ SINE ID -68 84 7 3 1597 223 149 43 0 chr3 132769090 132769137 -26830646 + (CAGAGA)n Simple_repeat Simple_repeat 6 54 0 3 1597 449 194 101 10 chr3 132769288 132769387 -26830396 - B1_Mur2 SINE Alu -2 147 40 3 1597 266 297 76 23 chr3 132769394 132769525 -26830258 - B1F SINE Alu -9 140 3 3 1597 347 316 10 39 chr3 132769525 132769627 -26830156 + MER2 DNA MER2_type 247 345 0 3 1597 30 45 0 0 chr3 132769841 132769885 -26829898 + AT_rich Low_complexity Low_complexity 1 44 0 3 1597 287 274 66 94 chr3 132771443 132771624 -26828159 - MARNA DNA Mariner -314 272 97 3 1597 22 0 0 0 chr3 132771775 132771797 -26827986 + AT_rich Low_complexity Low_complexity 1 22 0 3 1597 200 35 35 0 chr3 132772426 132772455 -26827328 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 3 1597 186 43 0 0 chr3 132774340 132774363 -26825420 + (TG)n Simple_repeat Simple_repeat 2 24 0 3 1597 27 29 0 0 chr3 132774393 132774427 -26825356 + AT_rich Low_complexity Low_complexity 1 34 0 3 1597 1130 237 60 34 chr3 132774640 132774990 -26824793 - ORR1E LTR MaLR 0 359 1 3 1597 439 378 120 0 chr3 132775231 132775464 -26824319 + Tigger5 DNA MER2_type 1 261 -2145 3 1598 26 0 0 0 chr3 132776706 132776732 -26823051 + AT_rich Low_complexity Low_complexity 1 26 0 3 1598 24 32 0 0 chr3 132777726 132777757 -26822026 + AT_rich Low_complexity Low_complexity 1 31 0 3 1598 242 303 79 0 chr3 132778676 132778752 -26821031 + MIR SINE MIR 5 86 -176 3 1598 1501 89 0 5 chr3 132779882 132780075 -26819708 + B2_Mm2 SINE B2 1 192 -3 3 1598 26 50 0 0 chr3 132780261 132780301 -26819482 + AT_rich Low_complexity Low_complexity 1 40 0 3 1598 556 272 25 55 chr3 132780301 132780503 -26819280 + B3A SINE B2 3 198 0 3 1598 21 36 0 0 chr3 132780649 132780677 -26819106 + AT_rich Low_complexity Low_complexity 1 28 0 3 1598 775 210 22 7 chr3 132781634 132781773 -26818010 - B1_Mur1 SINE Alu -6 143 3 3 1598 6058 58 0 11 chr3 132781872 132782598 -26817185 - L1Md_F2 LINE L1 -1 6581 5864 3 1598 405 0 0 0 chr3 132783521 132783566 -26816217 + (TA)n Simple_repeat Simple_repeat 2 46 0 3 1598 664 180 166 0 chr3 132784149 132784288 -26815495 + ORR1D1 LTR MaLR 1 162 -212 3 1598 3389 56 2 8 chr3 132784298 132784696 -26815087 + MTA_Mm LTR MaLR 1 396 0 3 1598 612 171 18 0 chr3 132784696 132784807 -26814976 + ORR1D1 LTR MaLR 262 374 0 3 1598 1080 304 79 34 chr3 132785832 132786417 -26813366 + L1MB8 LINE L1 5568 6178 0 3 1598 3027 14 60 14 chr3 132786626 132786977 -26812806 + IAPLTR1_Mm LTR ERVK 1 367 0 3 1598 56649 20 19 1 chr3 132786977 132793339 -26806444 + IAPEz-int LTR ERVK 8 6481 0 3 1598 3027 14 60 14 chr3 132793339 132793690 -26806093 + IAPLTR1_Mm LTR ERVK 1 367 0 3 1598 1294 168 22 18 chr3 132794302 132794526 -26805257 - URR1B DNA MER1_type 0 225 1 3 1598 374 57 19 0 chr3 132794746 132794799 -26804984 + (TCCCC)n Simple_repeat Simple_repeat 5 58 0 3 1598 503 261 18 54 chr3 132795808 132795954 -26803829 + RSINE1 SINE B4 2 144 -21 3 1598 270 0 0 0 chr3 132795954 132795984 -26803799 + (TG)n Simple_repeat Simple_repeat 2 31 0 3 1598 503 261 18 54 chr3 132795984 132796003 -26803780 + RSINE1 SINE B4 145 161 -4 3 1598 286 326 60 30 chr3 132796322 132796455 -26803328 - L2a LINE L2 -10 3416 3280 3 1598 3731 288 63 22 chr3 132797383 132798476 -26801307 + Lx8 LINE L1 6088 7224 -249 3 1598 333 47 0 0 chr3 132798476 132798519 -26801264 + (GA)n Simple_repeat Simple_repeat 1 43 0 3 1598 3731 288 63 22 chr3 132798519 132798610 -26801173 + Lx8 LINE L1 7225 7320 -153 3 1598 194 0 0 37 chr3 132798714 132798741 -26801042 + (TAA)n Simple_repeat Simple_repeat 2 27 0 3 1598 191 114 0 28 chr3 132798742 132798778 -26801005 + (GGAGAA)n Simple_repeat Simple_repeat 5 39 0 3 1598 261 301 147 5 chr3 132798778 132798790 -26800993 + HAL1 LINE L1 1721 1732 -775 3 1598 1277 78 6 0 chr3 132798790 132798969 -26800814 + (GAA)n Simple_repeat Simple_repeat 1 180 0 3 1598 261 301 147 5 chr3 132798969 132799140 -26800643 + HAL1 LINE L1 1733 1929 -578 3 1598 297 0 0 0 chr3 132799141 132799174 -26800609 + (TG)n Simple_repeat Simple_repeat 1 33 0 3 1598 690 89 0 0 chr3 132799174 132799285 -26800498 + (GA)n Simple_repeat Simple_repeat 1 112 0 3 1598 819 267 81 4 chr3 132799339 132799587 -26800196 - B4A SINE B4 -19 273 7 3 1598 307 250 97 29 chr3 132799800 132799903 -26799880 + L1MD2 LINE L1 6233 6342 -17 3 1598 184 121 0 29 chr3 132801979 132802013 -26797770 + L3b LINE CR1 295 327 -155 3 1598 485 328 52 0 chr3 132802357 132802491 -26797292 - RSINE1 SINE B4 -22 143 3 3 1598 387 0 0 0 chr3 132802519 132802562 -26797221 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 1598 432 227 0 0 chr3 132802563 132802638 -26797145 + MTE2b LTR MaLR 5 79 -300 3 1598 405 173 133 0 chr3 132802643 132802718 -26797065 + B1_Mur2 SINE Alu 14 98 -51 4 1598 273 200 0 104 chr3 132803188 132803255 -26796528 + ID4_ SINE ID 2 61 -22 4 1598 831 137 0 0 chr3 132803568 132803729 -26796054 + (TG)n Simple_repeat Simple_repeat 2 162 0 4 1598 387 0 0 0 chr3 132805572 132805615 -26794168 + (TG)n Simple_repeat Simple_repeat 1 43 0 4 1598 570 317 105 19 chr3 132805655 132805864 -26793919 - B4A SINE B4 -27 265 39 4 1598 533 299 54 43 chr3 132805897 132806082 -26793701 - B3A SINE B2 -10 188 2 4 1598 243 0 0 0 chr3 132806575 132806602 -26793181 + (TG)n Simple_repeat Simple_repeat 1 27 0 4 1598 357 320 26 32 chr3 132807112 132807267 -26792516 - MIRb SINE MIR 0 268 115 4 1598 276 336 46 31 chr3 132807276 132807447 -26792336 + MLT1J LTR MaLR 37 183 -329 4 1598 324 48 0 0 chr3 132807679 132807721 -26792062 + (CTGTG)n Simple_repeat Simple_repeat 1 42 0 4 1598 460 233 106 24 chr3 132810225 132810348 -26789435 + B1F SINE Alu 1 133 -16 4 1598 305 183 34 9 chr3 132810348 132810428 -26789355 + B1F SINE Alu 64 133 -16 4 1598 339 189 38 63 chr3 132810430 132810509 -26789274 + B1F SINE Alu 73 149 0 4 1598 3295 71 10 0 chr3 132810914 132811310 -26788473 - MTB LTR MaLR 0 400 1 4 1598 262 239 0 56 chr3 132811461 132811532 -26788251 - B1F SINE Alu -10 139 73 4 1598 238 228 0 0 chr3 132811504 132811561 -26788222 - B1F1 SINE Alu -20 129 73 4 1598 239 261 21 64 chr3 132811562 132811656 -26788127 - B1F1 SINE Alu -20 129 40 4 1598 241 262 0 14 chr3 132811649 132811743 -26788040 - B1F1 SINE Alu -20 129 40 4 1598 292 190 35 0 chr3 132813393 132813451 -26786332 - MIR3 SINE MIR -30 178 119 4 1598 1606 207 72 18 chr3 132815746 132816081 -26783702 - Lx5 LINE L1 0 7050 6698 4 1598 180 0 0 0 chr3 132816121 132816141 -26783642 + (CAA)n Simple_repeat Simple_repeat 2 21 0 4 1598 757 271 88 16 chr3 132816280 132816587 -26783196 + RLTR15 LTR ERVK 1 329 -30 4 1598 561 315 162 13 chr3 132816598 132817071 -26782712 + Lx8 LINE L1 6929 7472 -1 4 1598 359 331 52 0 chr3 132817525 132817661 -26782122 - B1F2 SINE Alu -6 143 1 4 1598 557 351 65 18 chr3 132817721 132818047 -26781736 + L2a LINE L2 2847 3187 -239 4 1598 420 151 29 7 chr3 132818052 132818192 -26781591 + (TCTCTG)n Simple_repeat Simple_repeat 4 146 0 4 1598 315 333 145 5 chr3 132818192 132818385 -26781398 + L2a LINE L2 3198 3417 -9 4 1598 22 0 0 0 chr3 132818558 132818580 -26781203 + AT_rich Low_complexity Low_complexity 1 22 0 4 1598 678 213 81 0 chr3 132818620 132818756 -26781027 - B1_Mur3 SINE Alu -1 148 2 4 1598 28 61 0 0 chr3 132819167 132819216 -26780567 + AT_rich Low_complexity Low_complexity 1 49 0 4 1598 1033 208 10 29 chr3 132820539 132820747 -26779036 - B3 SINE B2 -6 210 7 4 1598 233 250 0 30 chr3 132823981 132824047 -26775736 + CT-rich Low_complexity Low_complexity 2 65 0 4 1598 206 372 87 18 chr3 132824100 132824319 -26775464 + MIR SINE MIR 17 250 -12 4 1598 750 257 69 10 chr3 132824457 132824631 -26775152 + B3A SINE B2 3 185 -10 4 1598 477 34 0 0 chr3 132825442 132825501 -26774282 + (GA)n Simple_repeat Simple_repeat 2 60 0 4 1598 221 200 33 0 chr3 132825889 132825949 -26773834 + GA-rich Low_complexity Low_complexity 3 64 0 4 1598 236 355 0 11 chr3 132827730 132827821 -26771962 + Lx8 LINE L1 7172 7261 -212 4 1598 210 71 0 0 chr3 132828626 132828654 -26771129 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 4 1598 25 0 0 0 chr3 132828669 132828694 -26771089 + AT_rich Low_complexity Low_complexity 1 25 0 4 1598 1838 92 80 24 chr3 132828701 132828989 -26770794 - Lx LINE L1 -2 6995 6692 4 1598 2670 153 65 0 chr3 132829864 132830307 -26769476 - Lx LINE L1 0 6654 6183 4 1598 188 301 110 0 chr3 132830343 132830416 -26769367 - L2a LINE L2 -52 3374 3294 4 1598 222 194 0 31 chr3 132830681 132830745 -26769038 + A-rich Low_complexity Low_complexity 3 64 0 4 1598 600 14 0 0 chr3 132830746 132830815 -26768968 + (GA)n Simple_repeat Simple_repeat 1 69 0 4 1598 282 288 38 0 chr3 132831747 132831827 -26767956 + (TATATG)n Simple_repeat Simple_repeat 4 86 0 4 1598 474 18 0 0 chr3 132831832 132831887 -26767896 + (TC)n Simple_repeat Simple_repeat 1 55 0 4 1598 369 324 43 7 chr3 132832426 132832566 -26767217 - MIRb SINE MIR -65 203 59 4 1598 261 0 0 0 chr3 132833270 132833299 -26766484 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 4 1598 735 151 109 16 chr3 132833299 132833427 -26766356 - B1_Mur4 SINE Alu -10 140 1 4 1598 5122 3 0 0 chr3 132834048 132834612 -26765171 + L1Md_A LINE L1 6019 6582 0 4 1598 392 252 138 45 chr3 132834689 132835159 -26764624 - L1MC4a LINE L1 -380 7502 6989 4 1598 390 151 0 0 chr3 132835213 132835286 -26764497 + (TG)n Simple_repeat Simple_repeat 2 74 0 4 1598 583 299 42 59 chr3 132835305 132835593 -26764190 - B4A SINE B4 0 292 10 4 1598 1634 324 95 62 chr3 132835610 132835928 -26763855 - BLACKJACK DNA AcHobo -478 2466 2138 4 1598 482 252 8 16 chr3 132835928 132836049 -26763734 + PB1D7 SINE Alu 1 120 0 4 1598 1634 324 95 62 chr3 132836049 132836755 -26763028 - BLACKJACK DNA AcHobo -807 2137 1396 4 1598 665 257 72 11 chr3 132836755 132836936 -26762847 - B3A SINE B2 -6 192 1 4 1598 1634 324 95 62 chr3 132836936 132837457 -26762326 - BLACKJACK DNA AcHobo -1549 1395 869 4 1598 21 36 0 0 chr3 132837563 132837591 -26762192 + AT_rich Low_complexity Low_complexity 1 28 0 4 1598 2846 124 24 9 chr3 132837626 132838081 -26761702 - Lx2 LINE L1 -1 6996 6535 4 1598 564 174 0 0 chr3 132838354 132838475 -26761308 + (TG)n Simple_repeat Simple_repeat 1 121 0 4 1598 26 0 0 0 chr3 132838928 132838954 -26760829 + AT_rich Low_complexity Low_complexity 1 26 0 4 1598 1064 204 11 0 chr3 132839794 132839985 -26759798 + B3A SINE B2 2 194 -4 4 1598 321 93 0 0 chr3 132840625 132840679 -26759104 + (GA)n Simple_repeat Simple_repeat 1 54 0 4 1598 875 294 24 72 chr3 132840734 132840938 -26758845 + B4A SINE B4 1 201 -91 4 1598 1231 158 13 9 chr3 132840938 132841162 -26758621 - URR1B DNA MER1_type 0 225 1 4 1598 875 294 24 72 chr3 132841162 132841250 -26758533 + B4A SINE B4 202 279 -13 4 1598 180 152 0 0 chr3 132841266 132841299 -26758484 + (CA)n Simple_repeat Simple_repeat 2 34 0 4 1598 194 0 0 37 chr3 132841912 132841939 -26757844 + (TTG)n Simple_repeat Simple_repeat 2 27 0 4 1598 510 151 65 144 chr3 132841939 132842078 -26757705 - B1_Mur2 SINE Alu -11 138 11 4 1598 295 321 0 13 chr3 132842104 132842183 -26757600 + ID4 SINE ID 5 82 -1 4 1598 24 0 0 0 chr3 132842365 132842389 -26757394 + AT_rich Low_complexity Low_complexity 1 24 0 4 1598 21 36 0 0 chr3 132842430 132842458 -26757325 + AT_rich Low_complexity Low_complexity 1 28 0 4 1598 1272 112 18 61 chr3 132843614 132843843 -26755940 - L1_Mus3 LINE L1 -9 6629 6411 4 1598 7945 120 9 2 chr3 132843843 132845240 -26754543 + L1_Mus3 LINE L1 4543 5952 -686 4 1598 309 293 8 0 chr3 132845257 132845380 -26754403 - L1M2 LINE L1 -1439 4704 4581 4 1598 307 301 241 0 chr3 132845506 132845742 -26754041 + L1MA8 LINE L1 4725 5017 -1126 4 1598 908 280 162 19 chr3 132845749 132846587 -26753196 + L1MA8 LINE L1 5318 6291 0 4 1598 272 314 9 62 chr3 132847001 132847090 -26752693 + MLT1A LTR MaLR 1 83 -282 4 1598 1041 253 119 50 chr3 132847090 132847410 -26752373 + ORR1D2 LTR MaLR 1 342 -28 4 1598 189 94 0 0 chr3 132847458 132847490 -26752293 + (TTTTTG)n Simple_repeat Simple_repeat 5 36 0 4 1598 262 100 25 0 chr3 132847573 132847613 -26752170 + ORR1D2 LTR MaLR 324 364 -6 4 1598 625 289 40 77 chr3 132847638 132847885 -26751898 + MLT1A LTR MaLR 113 350 -24 4 1598 3964 155 69 6 chr3 132847909 132848602 -26751181 + RMER19A LTR ERVK 1 737 0 4 1598 360 271 8 25 chr3 132849305 132849461 -26750322 - L1MA5 LINE L1 -377 5923 5771 4 1598 295 187 79 13 chr3 132849507 132849583 -26750200 + MTEa LTR MaLR 299 379 0 4 1598 791 251 79 16 chr3 132849655 132850124 -26749659 - L1MA5 LINE L1 -632 5668 5169 4 1598 558 332 39 74 chr3 132851253 132851536 -26748247 + B4A SINE B4 2 274 -18 4 1598 348 282 367 64 chr3 132852861 132853145 -26746638 - MLT1A1 LTR MaLR -16 392 23 4 1598 534 335 106 6 chr3 132853163 132853284 -26746499 - L2 LINE L2 -928 2491 2366 4 1598 2318 117 23 3 chr3 132853284 132853634 -26746149 + IAPEY2_LTR LTR ERVK 1 357 0 4 1598 534 335 106 6 chr3 132853634 132853872 -26745911 - L2 LINE L2 -1054 2365 2097 4 1598 23 0 0 0 chr3 132854328 132854351 -26745432 + AT_rich Low_complexity Low_complexity 1 23 0 4 1598 18456 122 10 9 chr3 132854438 132855293 -26744490 + L1_Mus3 LINE L1 2802 3658 -2225 4 1598 3686 34 14 66 chr3 132855293 132855794 -26743989 + IAPLTR2_Mm LTR ERVK 1 475 0 4 1598 18456 104 20 7 chr3 132855794 132858733 -26741050 + L1_Mus3 LINE L1 3659 6637 -1 4 1598 3494 69 0 39 chr3 132858762 132859247 -26740536 + L1Md_F2 LINE L1 6105 6570 -12 4 1598 237 367 0 0 chr3 132859283 132859311 -26740472 - BC1_Mm scRNA scRNA -54 98 9 4 1598 258 323 0 0 chr3 132859311 132859373 -26740410 - tRNA-Ala-GCY_ tRNA tRNA -11 64 3 4 1598 294 307 123 23 chr3 132859378 132859508 -26740275 - B1F SINE Alu -3 146 4 4 1598 22 0 0 0 chr3 132860379 132860401 -26739382 + AT_rich Low_complexity Low_complexity 1 22 0 4 1598 540 73 0 0 chr3 132860418 132860500 -26739283 + (TCTCTG)n Simple_repeat Simple_repeat 4 85 0 4 1598 525 267 102 86 chr3 132860505 132860765 -26739018 - B4 SINE B4 -12 280 33 4 1598 1049 224 15 5 chr3 132860888 132861094 -26738689 + B3 SINE B2 1 208 -8 4 1598 271 192 27 0 chr3 132861177 132861250 -26738533 + (TCTG)n Simple_repeat Simple_repeat 1 75 0 4 1598 211 339 36 0 chr3 132861307 132861363 -26738420 - B1F SINE Alu -89 60 3 4 1598 376 282 16 0 chr3 132862212 132862336 -26737447 - L1MD1 LINE L1 -2 6240 6115 4 1598 259 319 48 81 chr3 132862372 132862582 -26737201 - RLTR25A LTR ERVK 0 1103 849 4 1598 250 361 49 73 chr3 132863404 132863649 -26736134 - RLTR25A LTR ERVK -789 314 76 4 1598 297 336 27 71 chr3 132863667 132863779 -26736004 - RLTR25A LTR ERVK -996 107 1 4 1598 216 0 0 0 chr3 132865109 132865133 -26734650 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 4 1598 1111 142 32 37 chr3 132865158 132865227 -26734556 - URR1B DNA MER1_type 0 225 163 4 1598 2277 119 14 36 chr3 132865227 132865592 -26734191 + IAPEY2_LTR LTR ERVK 1 357 0 4 1598 1111 142 32 37 chr3 132865592 132865712 -26734071 - URR1B DNA MER1_type -63 162 37 4 1598 408 20 0 0 chr3 132866355 132866404 -26733379 + (CA)n Simple_repeat Simple_repeat 2 50 0 5 1598 381 259 148 41 chr3 132867136 132867305 -26732478 + B4A SINE B4 106 292 0 5 1598 378 0 0 0 chr3 132867327 132867369 -26732414 + (CA)n Simple_repeat Simple_repeat 2 43 0 5 1598 234 105 0 0 chr3 132867534 132867572 -26732211 + (CAAAA)n Simple_repeat Simple_repeat 3 40 0 5 1598 537 194 37 0 chr3 132867853 132867961 -26731822 - B1_Mur1 SINE Alu -8 141 30 5 1598 230 193 48 56 chr3 132868169 132868295 -26731488 - RLTR40 LTR ERVK -127 690 566 5 1598 243 255 0 0 chr3 132868295 132868444 -26731339 + (TG)n Simple_repeat Simple_repeat 1 149 0 5 1598 278 235 0 11 chr3 132868522 132868703 -26731080 + (TG)n Simple_repeat Simple_repeat 2 180 0 5 1598 241 206 0 31 chr3 132868703 132868768 -26731015 + (TCTG)n Simple_repeat Simple_repeat 1 63 0 5 1598 199 0 65 0 chr3 132869564 132869595 -26730188 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 5 1598 351 0 0 0 chr3 132870888 132870927 -26728856 + (TG)n Simple_repeat Simple_repeat 1 39 0 5 1598 406 361 47 47 chr3 132871509 132871762 -26728021 + LTR83 LTR ERVL 182 434 -346 5 1598 647 319 23 46 chr3 132871805 132871979 -26727804 - ID_B1 SINE B4 -29 195 26 5 1598 225 0 0 0 chr3 132871987 132872012 -26727771 + (CAG)n Simple_repeat Simple_repeat 2 26 0 5 1598 309 163 96 0 chr3 132872041 132872176 -26727607 + (TA)n Simple_repeat Simple_repeat 2 149 0 5 1598 184 82 108 14 chr3 132872201 132872275 -26727508 + (CATATA)n Simple_repeat Simple_repeat 4 84 0 5 1598 418 176 64 25 chr3 132872283 132872440 -26727343 + (TATAA)n Simple_repeat Simple_repeat 1 163 0 5 1598 1685 170 9 18 chr3 132872830 132872849 -26726934 - Lx3_Mus LINE L1 -1089 5920 5906 5 1598 3041 141 35 9 chr3 132872849 132873387 -26726396 - Lx LINE L1 -7 6647 6096 5 1598 4084 134 12 34 chr3 132873387 132874002 -26725781 - Lx3_Mus LINE L1 -1104 5905 5288 5 1598 1061 84 21 0 chr3 132874002 132874145 -26725638 - B1_Mus2 SINE Alu 0 147 2 5 1598 4084 132 12 35 chr3 132874145 132874275 -26725508 - Lx3_Mus LINE L1 -596 5287 5176 5 1598 502 346 68 0 chr3 132875161 132875398 -26724385 + Tigger5 DNA MER2_type 2152 2404 -2 5 1598 437 329 69 49 chr3 132875835 132876081 -26723702 + MIR SINE MIR 10 260 -2 5 1598 307 0 0 0 chr3 132876275 132876319 -26723464 - L1Md_T LINE L1 -1 6581 6538 5 1598 464 266 62 8 chr3 132876449 132876578 -26723205 - RSINE1 SINE B4 -28 137 2 5 1598 201 195 0 0 chr3 132876708 132876749 -26723034 + (TG)n Simple_repeat Simple_repeat 1 41 0 5 1598 262 238 157 30 chr3 132877738 132877872 -26721911 + Lx8 LINE L1 7038 7188 -285 5 1598 502 174 13 3 chr3 132878333 132878435 -26721348 - MTC LTR MaLR -6 415 300 5 1598 532 297 178 18 chr3 132878436 132878892 -26720891 + Lx8 LINE L1 6939 7467 -6 5 1598 3327 64 9 5 chr3 132878898 132879335 -26720448 + L1_Mus1 LINE L1 6129 6567 0 5 1598 24 0 0 0 chr3 132879335 132879359 -26720424 + AT_rich Low_complexity Low_complexity 1 24 0 5 1598 444 276 53 12 chr3 132879380 132879549 -26720234 + L1MB3 LINE L1 1930 2105 -4279 5 1598 702 284 124 66 chr3 132879528 132880748 -26719035 + L1MB3 LINE L1 4914 6209 -210 5 1598 232 261 174 0 chr3 132880749 132880818 -26718965 + PB1D9 SINE Alu 39 119 -1 5 1598 836 250 17 0 chr3 132880898 132881078 -26718705 - B3A SINE B2 -3 195 13 5 1598 1020 285 78 5 chr3 132882056 132882441 -26717342 - L1MB3 LINE L1 -4 6179 5767 5 1598 276 347 81 12 chr3 132882576 132882748 -26717035 - MIRb SINE MIR -61 207 24 5 1598 417 272 91 18 chr3 132883149 132883314 -26716469 + RMER20B LTR ERVK 180 356 -271 5 1598 262 314 31 47 chr3 132883395 132883522 -26716261 + RMER20B LTR ERVK 483 607 -20 5 1598 250 303 80 68 chr3 132883535 132883698 -26716085 - MIRc SINE MIR -101 167 3 5 1598 610 347 73 10 chr3 132884783 132885086 -26714697 + Tigger13a DNA MER2_type 146 467 -304 5 1598 735 244 53 29 chr3 132886247 132886454 -26713329 + B3 SINE B2 3 214 -2 5 1598 476 351 33 42 chr3 132887423 132887637 -26712146 + MER20 DNA MER1_type 2 213 -6 5 1598 915 140 11 17 chr3 132887943 132887963 -26711820 + polypyrimidine Low_complexity Low_complexity 162 180 0 5 1598 753 93 0 0 chr3 132887963 132888070 -26711713 + (TTCC)n Simple_repeat Simple_repeat 1 107 0 5 1598 915 182 8 12 chr3 132888070 132888287 -26711496 + CT-rich Low_complexity Low_complexity 1 216 0 5 1598 426 20 0 0 chr3 132888487 132888538 -26711245 + (TC)n Simple_repeat Simple_repeat 2 52 0 5 1598 495 48 0 0 chr3 132888538 132888600 -26711183 + (TCC)n Simple_repeat Simple_repeat 3 64 0 5 1598 252 0 0 0 chr3 132888679 132888707 -26711076 + (TCTG)n Simple_repeat Simple_repeat 1 28 0 5 1598 522 329 0 0 chr3 132888795 132888959 -26710824 - Lx8 LINE L1 -292 7181 7018 5 1598 267 333 13 0 chr3 132889005 132889083 -26710700 - ID4_ SINE ID -2 81 3 5 1598 331 233 96 0 chr3 132889541 132889614 -26710169 + ID4 SINE ID 2 81 -2 5 1598 356 145 217 0 chr3 132889826 132889895 -26709888 - BC1_Mm scRNA scRNA -67 85 2 5 1598 423 304 52 12 chr3 132890732 132890905 -26708878 - L1MB3 LINE L1 0 6183 6004 5 1598 221 75 0 24 chr3 132891848 132891889 -26707894 + (TTTTTG)n Simple_repeat Simple_repeat 4 43 0 5 1598 3113 36 39 0 chr3 132891931 132892290 -26707493 - L1Md_F2 LINE L1 -3 6579 6207 5 1598 375 23 0 0 chr3 132892399 132892443 -26707340 + (TC)n Simple_repeat Simple_repeat 1 44 0 5 1598 930 270 78 16 chr3 132893476 132893785 -26705998 - MLT1A0 LTR MaLR -11 354 27 5 1598 380 38 38 0 chr3 132893966 132894019 -26705764 + (CATA)n Simple_repeat Simple_repeat 2 56 0 5 1598 23 0 0 0 chr3 132895044 132895067 -26704716 + AT_rich Low_complexity Low_complexity 1 23 0 5 1598 438 360 82 13 chr3 132896130 132896361 -26703422 - MIRb SINE MIR -15 253 7 5 1598 367 167 36 44 chr3 132897240 132897334 -26702449 + B1_Mm SINE Alu 40 137 -12 5 1598 247 25 24 24 chr3 132897334 132897375 -26702408 + (CAAAA)n Simple_repeat Simple_repeat 3 43 0 5 1598 202 220 0 0 chr3 132899411 132899461 -26700322 + A-rich Low_complexity Low_complexity 1 50 0 5 1598 291 295 26 92 chr3 132899609 132899762 -26700021 - B4A SINE B4 -13 279 137 5 1598 326 187 13 39 chr3 132899760 132899838 -26699945 - B3A SINE B2 -121 77 2 5 1598 257 262 77 77 chr3 132899858 132899949 -26699834 - B1F2 SINE Alu -3 146 56 5 1598 495 0 0 0 chr3 132899951 132900006 -26699777 + (TC)n Simple_repeat Simple_repeat 2 56 0 5 1598 256 333 72 41 chr3 132900081 132900178 -26699605 - B1F1 SINE Alu -38 111 12 5 1598 736 347 58 42 chr3 132900191 132900591 -26699192 - Tigger9b DNA MER2_type -199 425 20 5 1598 22 56 0 0 chr3 132900722 132900758 -26699025 + AT_rich Low_complexity Low_complexity 1 36 0 5 1598 605 280 7 27 chr3 132900758 132900905 -26698878 - RSINE1 SINE B4 -19 146 3 5 1598 336 281 70 104 chr3 132901122 132901392 -26698391 + ORR1E LTR MaLR 98 358 -1 5 1598 287 319 61 20 chr3 132902320 132902467 -26697316 + MLT1I LTR MaLR 6 158 -253 5 1598 2740 150 41 26 chr3 132902611 132903077 -26696706 + Lx2B LINE L1 6528 7000 0 5 1598 516 295 50 0 chr3 132903091 132903230 -26696553 - B1F1 SINE Alu -2 147 2 5 1598 212 321 0 0 chr3 132904174 132904230 -26695553 + B1F SINE Alu 6 61 -88 5 1598 452 109 238 7 chr3 132904234 132904339 -26695444 - L1_Mus1 LINE L1 -13 6571 6450 5 1598 357 82 0 0 chr3 132904336 132904385 -26695398 + L1_Mus3 LINE L1 5853 5901 -737 5 1598 324 205 115 0 chr3 132904385 132904463 -26695320 + ID_B1 SINE B4 137 223 -1 5 1598 276 286 0 0 chr3 132904673 132904736 -26695047 - RSINE1 SINE B4 -69 96 34 5 1598 201 352 0 14 chr3 132904799 132904871 -26694912 - MIRb SINE MIR -173 95 25 5 1599 794 201 8 0 chr3 132907774 132907908 -26691875 + B1_Mur1 SINE Alu 5 139 -10 5 1599 189 0 0 0 chr3 132908127 132908148 -26691635 + (TG)n Simple_repeat Simple_repeat 2 22 0 5 1599 826 302 80 110 chr3 132908166 132908765 -26691018 + RLTR18 LTR ERVK 31 611 -5 5 1599 616 239 143 50 chr3 132908782 132909020 -26690763 - B4A SINE B4 -16 276 17 5 1599 311 282 120 4 chr3 132909194 132909312 -26690471 - PB1D7 SINE Alu 0 147 16 5 1599 897 127 0 0 chr3 132909923 132910057 -26689726 + B1_Mus2 SINE Alu 9 142 -5 5 1599 690 169 16 33 chr3 132910205 132910327 -26689456 + PB1D9 SINE Alu 1 120 0 5 1599 501 219 61 23 chr3 132911296 132911427 -26688356 + B1_Mur2 SINE Alu 5 140 -9 5 1599 26 0 0 0 chr3 132911827 132911853 -26687930 + AT_rich Low_complexity Low_complexity 1 26 0 5 1599 401 273 127 0 chr3 132911892 132912002 -26687781 + MTD LTR MaLR 1 124 -295 5 1599 26679 27 3 0 chr3 132912009 132915789 -26683994 - L1Md_T LINE L1 0 6582 2790 5 1599 1129 272 49 15 chr3 132915789 132916114 -26683669 + MTD LTR MaLR 84 419 0 5 1599 1214 184 9 0 chr3 132916322 132916539 -26683244 + URR1B DNA MER1_type 7 225 0 5 1599 566 265 21 35 chr3 132916545 132916686 -26683097 + RSINE1 SINE B4 3 141 -24 5 1599 423 0 0 0 chr3 132916780 132916827 -26682956 + (CA)n Simple_repeat Simple_repeat 1 47 0 5 1599 1630 251 31 48 chr3 132916890 132917371 -26682412 + RMER19C LTR ERVK 138 610 -1 5 1599 348 80 52 26 chr3 132917375 132917452 -26682331 + (CAGAGA)n Simple_repeat Simple_repeat 2 80 0 5 1599 24 0 0 0 chr3 132918147 132918171 -26681612 + AT_rich Low_complexity Low_complexity 1 24 0 5 1599 2483 103 11 0 chr3 132918194 132918554 -26681229 + ORR1B1 LTR MaLR 1 364 -30 5 1599 696 309 29 19 chr3 132918557 132918864 -26680919 - L1MA6 LINE L1 -99 6201 5892 5 1599 831 98 73 0 chr3 132919566 132919689 -26680094 - B1_Mus1 SINE Alu 0 148 17 5 1599 418 276 88 88 chr3 132919568 132919727 -26680056 - B4 SINE B4 -69 223 65 5 1599 234 306 130 0 chr3 132919729 132919837 -26679946 - L1MA9 LINE L1 -339 5973 5852 6 1599 402 298 38 0 chr3 132920004 132920135 -26679648 - MLT1F-int LTR MaLR -572 917 782 6 1599 243 320 47 37 chr3 132920231 132920338 -26679445 - MLT1F-int LTR MaLR -906 583 476 6 1599 25 0 0 0 chr3 132920453 132920478 -26679305 + AT_rich Low_complexity Low_complexity 1 25 0 6 1599 332 288 22 15 chr3 132920593 132920727 -26679056 - L1M5 LINE L1 -443 5681 5547 6 1599 351 44 0 0 chr3 132920958 132921003 -26678780 + (TG)n Simple_repeat Simple_repeat 1 45 0 6 1599 582 250 46 0 chr3 132921008 132921160 -26678623 - B3A SINE B2 -38 160 2 6 1599 673 291 15 31 chr3 132921430 132921625 -26678158 - B4A SINE B4 -2 290 99 6 1599 411 264 0 8 chr3 132921681 132922175 -26677608 + (TGAG)n Simple_repeat Simple_repeat 1 489 0 6 1599 233 222 0 16 chr3 132922180 132922244 -26677539 + (TG)n Simple_repeat Simple_repeat 1 63 0 6 1599 538 285 85 13 chr3 132922663 132922816 -26676967 + RSINE1 SINE B4 2 165 0 6 1599 22 56 0 0 chr3 132922942 132922978 -26676805 + AT_rich Low_complexity Low_complexity 1 36 0 6 1599 230 182 0 0 chr3 132923149 132923193 -26676590 - Lx7 LINE L1 -397 7299 7256 6 1599 739 331 111 26 chr3 132923827 132924358 -26675425 + L2 LINE L2 992 1567 -1852 6 1599 308 230 27 13 chr3 132924450 132924600 -26675183 + (CATA)n Simple_repeat Simple_repeat 4 155 0 6 1599 259 341 8 15 chr3 132924605 132924736 -26675047 + (CA)n Simple_repeat Simple_repeat 1 130 0 6 1599 309 236 35 141 chr3 132924751 132924978 -26674805 + Lx8 LINE L1 4305 4507 -1636 6 1599 861 311 70 32 chr3 132924957 132925781 -26674002 + Lx8 LINE L1 4858 5726 -574 6 1599 301 227 0 15 chr3 132925816 132925883 -26673900 + L1P5 LINE L1 5718 5783 -373 6 1599 383 190 38 12 chr3 132925911 132925991 -26673792 + B1F2 SINE Alu 44 125 -24 6 1599 1681 219 64 5 chr3 132926006 132926382 -26673401 - MTD LTR MaLR -21 398 1 6 1599 228 292 154 0 chr3 132926423 132926488 -26673295 + RSINE1 SINE B4 87 161 -4 6 1599 23 33 0 0 chr3 132926551 132926581 -26673202 + AT_rich Low_complexity Low_complexity 1 30 0 6 1599 1138 96 0 14 chr3 132926809 132926946 -26672837 + B1_Mm SINE Alu 2 138 -9 6 1599 234 0 0 0 chr3 132926946 132926972 -26672811 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 6 1599 35129 73 5 7 chr3 132927039 132932421 -26667362 + L1Md_F3 LINE L1 214 5586 -297 6 1599 8900 35 2 1 chr3 132932421 132933416 -26666367 + L1Md_F3 LINE L1 5587 6582 -2 6 1599 548 106 81 0 chr3 132934673 132934796 -26664987 + G-rich Low_complexity Low_complexity 1 133 0 6 1599 1015 139 0 11 chr3 132934796 132934978 -26664805 + (GAGAA)n Simple_repeat Simple_repeat 1 180 0 6 1599 22 0 0 0 chr3 132935450 132935472 -26664311 + AT_rich Low_complexity Low_complexity 1 22 0 6 1599 258 309 32 54 chr3 132935863 132936048 -26663735 + L1MC LINE L1 5622 5802 -2080 6 1599 5701 82 38 1 chr3 132936657 132937386 -26662397 - Lx LINE L1 0 6654 5899 6 1599 1880 189 51 3 chr3 132937386 132937756 -26662027 + MTD LTR MaLR 26 405 -14 6 1599 1349 231 32 0 chr3 132938941 132939218 -26660565 - MTE2b LTR MaLR -31 348 63 6 1599 339 202 0 0 chr3 132939484 132939568 -26660215 + (CAGAGA)n Simple_repeat Simple_repeat 3 86 0 6 1599 324 259 131 30 chr3 132939717 132939916 -26659867 + MER33 DNA MER1_type 34 252 -72 6 1599 195 42 0 0 chr3 132939937 132939961 -26659822 + (TTATA)n Simple_repeat Simple_repeat 3 26 0 6 1599 720 149 0 0 chr3 132940014 132940128 -26659655 + B3 SINE B2 3 116 -100 6 1599 441 54 0 0 chr3 132940284 132940340 -26659443 + (TAGA)n Simple_repeat Simple_repeat 1 56 0 6 1599 192 364 72 9 chr3 132940861 132940972 -26658811 - L2c LINE L2 -194 3193 3076 6 1599 535 266 74 25 chr3 132940972 132941134 -26658649 + B4A SINE B4 123 292 0 6 1599 457 180 0 15 chr3 132941134 132941264 -26658519 + (CA)n Simple_repeat Simple_repeat 1 128 0 6 1599 579 29 0 0 chr3 132941862 132941931 -26657852 + (CA)n Simple_repeat Simple_repeat 2 70 0 6 1599 338 61 20 0 chr3 132942650 132942699 -26657084 + (TTTA)n Simple_repeat Simple_repeat 2 51 0 6 1599 1160 84 0 0 chr3 132942701 132942843 -26656940 - B1_Mus1 SINE Alu -6 142 1 6 1599 332 259 0 107 chr3 132943529 132943650 -26656133 + PB1D9 SINE Alu 5 112 -8 6 1599 1201 67 0 37 chr3 132943665 132943852 -26655931 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 6 1599 390 321 152 29 chr3 132944359 132944773 -26655010 - L1MD LINE L1 -1192 4954 4490 6 1599 3045 170 81 4 chr3 132944789 132945345 -26654438 + RMER1A Other Other 427 1025 -5 6 1599 320 270 194 33 chr3 132945418 132945530 -26654253 - L1M5 LINE L1 -1755 4391 4253 6 1599 324 0 0 0 chr3 132945530 132945566 -26654217 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 6 1599 320 270 194 33 chr3 132945566 132945664 -26654119 - L1M5 LINE L1 -1894 4252 4147 6 1599 512 272 37 0 chr3 132945768 132945904 -26653879 - ID_B1 SINE B4 0 224 84 6 1599 842 134 7 7 chr3 132946021 132946156 -26653627 + B1_Mur4 SINE Alu 12 146 -4 6 1599 2508 118 46 5 chr3 132946266 132946542 -26653241 + Lx2 LINE L1 6590 6866 -131 6 1599 243 0 0 0 chr3 132946542 132946569 -26653214 + (TGGG)n Simple_repeat Simple_repeat 3 29 0 6 1599 2508 118 46 5 chr3 132946569 132946684 -26653099 + Lx2 LINE L1 6867 6996 -1 6 1599 2209 203 118 18 chr3 132947018 132947537 -26652246 + Lx9 LINE L1 6275 6807 -837 6 1599 447 68 0 0 chr3 132948772 132948831 -26650952 + (TATAG)n Simple_repeat Simple_repeat 2 60 0 6 1599 450 94 0 0 chr3 132949235 132949299 -26650484 + (A)n Simple_repeat Simple_repeat 1 64 0 6 1599 297 75 0 0 chr3 132949321 132949361 -26650422 + (TTG)n Simple_repeat Simple_repeat 2 41 0 6 1599 180 0 0 0 chr3 132949530 132949550 -26650233 + (CAA)n Simple_repeat Simple_repeat 2 21 0 6 1599 26 0 0 0 chr3 132949875 132949901 -26649882 + AT_rich Low_complexity Low_complexity 1 26 0 6 1599 723 176 0 0 chr3 132949901 132950020 -26649763 - PB1D9 SINE Alu 0 120 2 6 1599 463 315 0 15 chr3 132950595 132950727 -26649056 - RSINE1 SINE B4 -34 131 2 6 1599 225 132 0 0 chr3 132951313 132951351 -26648432 + (CAT)n Simple_repeat Simple_repeat 1 38 0 6 1599 657 298 110 62 chr3 132951624 132951869 -26647914 + B4A SINE B4 8 269 -23 6 1599 243 0 0 0 chr3 132951869 132951896 -26647887 + (CA)n Simple_repeat Simple_repeat 2 28 0 6 1599 657 298 110 62 chr3 132951896 132951922 -26647861 + B4A SINE B4 270 292 0 6 1599 476 265 75 8 chr3 132952147 132952280 -26647503 + Lx8 LINE L1 6491 6632 -841 6 1599 2089 170 15 41 chr3 132952292 132952704 -26647079 - MTD LTR MaLR -14 405 5 6 1599 2401 258 67 66 chr3 132952704 132952941 -26646842 + Lx8 LINE L1 6623 6850 -623 6 1599 180 0 0 0 chr3 132952941 132952961 -26646822 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 6 1599 2401 258 67 66 chr3 132952961 132953452 -26646331 + Lx8 LINE L1 6851 7352 -121 6 1599 361 279 20 83 chr3 132953469 132953658 -26646125 - RLTR11B LTR ERVK -37 491 313 6 1599 1608 215 36 188 chr3 132953658 132954378 -26645405 + RMER19C LTR ERVK 1 611 0 6 1599 917 243 13 60 chr3 132954378 132954734 -26645049 - RLTR11B LTR ERVK -204 324 1 6 1599 1663 191 5 101 chr3 132954734 132955148 -26644635 - MYSERV6-int LTR ERVK 0 6550 6177 6 1599 11886 224 50 42 chr3 132955151 132959282 -26640501 - MYSERV6-int LTR ERVK -574 5976 307 6 1599 27 0 0 0 chr3 132959933 132959960 -26639823 + AT_rich Low_complexity Low_complexity 1 27 0 6 1599 2195 137 42 57 chr3 132960689 132961163 -26638620 + IAPLTR2_Mm LTR ERVK 1 467 -8 6 1599 4736 50 68 25 chr3 132961164 132961799 -26637984 + IAPEz-int LTR ERVK 1 662 -5819 6 1599 454 66 0 32 chr3 132961799 132961862 -26637921 + IAPEz-int LTR ERVK 1359 1419 -5062 6 1599 1869 111 4 4 chr3 132961851 132962113 -26637670 + IAPEz-int LTR ERVK 2236 2497 -5183 6 1599 953 80 24 0 chr3 132962108 132962233 -26637550 + IAPEz-int LTR ERVK 4783 4910 -2770 6 1599 21092 20 3 2 chr3 132962235 132964592 -26635191 + IAPEz-int LTR ERVK 4123 6481 0 6 1599 2373 145 42 52 chr3 132964592 132965072 -26634711 + IAPLTR2_Mm LTR ERVK 1 475 0 6 1599 2409 121 57 14 chr3 132965477 132965898 -26633885 + RLTR20A1 LTR ERVK 1 439 -112 6 1599 572 0 0 0 chr3 132965897 132965968 -26633815 + B1_Mm SINE Alu 33 103 -44 6 1599 307 219 31 0 chr3 132965967 132966031 -26633752 + RLTR20A1 LTR ERVK 455 520 -31 6 1599 21 57 0 0 chr3 132966731 132966766 -26633017 + AT_rich Low_complexity Low_complexity 1 35 0 6 1599 23 33 0 0 chr3 132967231 132967261 -26632522 + AT_rich Low_complexity Low_complexity 1 30 0 6 1599 279 278 88 20 chr3 132967951 132968098 -26631685 + Charlie4a DNA MER1_type 48 204 -304 6 1599 8400 32 16 2 chr3 132968159 132969388 -26630395 - L1Md_F2 LINE L1 0 6582 5337 6 1599 1475 54 3 13 chr3 132969753 132970149 -26629634 + (TTC)n Simple_repeat Simple_repeat 1 392 0 6 1599 724 141 0 15 chr3 132970149 132970286 -26629497 + CT-rich Low_complexity Low_complexity 1 135 0 6 1599 309 283 45 36 chr3 132970286 132970396 -26629387 - MTEa LTR MaLR -266 113 3 6 1599 1336 267 78 32 chr3 132970397 132970861 -26628922 - MTEa-int LTR MaLR -2 1578 1094 6 1599 2257 123 100 6 chr3 132971297 132971657 -26628126 - ORR1B1 LTR MaLR 0 394 1 6 1599 336 143 0 0 chr3 132972691 132972747 -26627036 + (TG)n Simple_repeat Simple_repeat 2 57 0 6 1599 22 35 0 0 chr3 132973150 132973179 -26626604 + GC_rich Low_complexity Low_complexity 1 29 0 6 1599 21 36 0 0 chr3 132973264 132973292 -26626491 + GC_rich Low_complexity Low_complexity 1 28 0 6 1599 189 121 0 0 chr3 132973292 132973325 -26626458 + (CCCTG)n Simple_repeat Simple_repeat 4 36 0 6 1599 363 229 75 19 chr3 132974310 132974417 -26625366 - PB1D9 SINE Alu 0 120 8 6 1599 902 267 39 21 chr3 132974954 132975227 -26624556 - B4 SINE B4 -10 282 2 6 1599 324 267 54 30 chr3 132976625 132976791 -26622992 + (CATG)n Simple_repeat Simple_repeat 3 172 0 6 1599 23 0 0 0 chr3 132977446 132977469 -26622314 + AT_rich Low_complexity Low_complexity 1 23 0 6 1599 33 0 0 0 chr3 132977824 132977857 -26621926 + AT_rich Low_complexity Low_complexity 1 33 0 6 1599 1150 146 136 0 chr3 132978499 132978698 -26621085 + URR1A DNA MER1_type 1 226 0 6 1599 1412 229 49 26 chr3 132979009 132979399 -26620384 - Lx8 LINE L1 -949 6524 6126 6 1599 814 260 141 3 chr3 132979733 132980038 -26619745 + L1M2 LINE L1 4407 4753 -1390 6 1599 250 222 178 14 chr3 132980861 132980934 -26618849 - MER58B DNA MER1_type -2 339 255 6 1599 984 173 16 16 chr3 132981303 132981497 -26618286 - B2_Mm2 SINE B2 -1 194 1 6 1599 196 274 91 66 chr3 132981498 132981619 -26618164 + L2a LINE L2 2624 2747 -672 6 1599 217 265 205 0 chr3 132982010 132982093 -26617690 + L2a LINE L2 3285 3384 -42 6 1599 533 257 145 45 chr3 132982221 132982400 -26617383 + B3A SINE B2 1 197 -1 6 1599 504 234 50 188 chr3 132982450 132982866 -26616917 + RLTR15 LTR ERVK 1 359 0 6 1599 203 306 68 34 chr3 132982951 132983039 -26616744 - L2a LINE L2 -2 3424 3334 6 1599 202 196 43 0 chr3 132984373 132984419 -26615364 - MIRm SINE MIR -185 91 44 6 1599 454 239 84 67 chr3 132985633 132985812 -26613971 - B3 SINE B2 -33 183 2 7 1599 22 0 0 0 chr3 132987482 132987504 -26612279 + AT_rich Low_complexity Low_complexity 1 22 0 7 1599 181 264 38 0 chr3 132987714 132987767 -26612016 + MER5B DNA MER1_type 123 177 -1 7 1599 1794 226 92 42 chr3 132987890 132988059 -26611724 - Lx9 LINE L1 0 7644 7466 7 1599 213 39 0 0 chr3 132988059 132988085 -26611698 + (TATG)n Simple_repeat Simple_repeat 2 27 0 7 1599 1794 226 92 42 chr3 132988085 132988279 -26611504 - Lx9 LINE L1 -179 7465 7283 7 1599 186 43 0 0 chr3 132988279 132988302 -26611481 + (CACCC)n Simple_repeat Simple_repeat 4 26 0 7 1599 1794 226 92 42 chr3 132988302 132988527 -26611256 - Lx9 LINE L1 -362 7282 7026 7 1599 691 230 7 8 chr3 132989122 132989269 -26610514 + B1_Mur1 SINE Alu 2 141 -8 7 1599 231 36 0 0 chr3 132989573 132989601 -26610182 + (TTC)n Simple_repeat Simple_repeat 2 29 0 7 1599 340 282 148 93 chr3 132990563 132990887 -26608896 - L1M3 LINE L1 -519 5778 5437 7 1599 519 17 0 0 chr3 132990940 132991000 -26608783 + (TG)n Simple_repeat Simple_repeat 1 60 0 7 1599 248 279 94 19 chr3 132991008 132991114 -26608669 - RSINE1 SINE B4 -50 115 2 7 1599 501 300 73 50 chr3 132991114 132991828 -26607955 - L1M3 LINE L1 -859 5441 4657 7 1599 198 0 0 0 chr3 132991828 132991850 -26607933 + (TG)n Simple_repeat Simple_repeat 2 23 0 7 1599 517 304 86 64 chr3 132991850 132992515 -26607268 - L1M3 LINE L1 -1487 4656 4041 7 1599 544 150 114 38 chr3 132992784 132992916 -26606867 - URR1B DNA MER1_type -16 209 68 7 1599 816 108 277 0 chr3 132994912 132995078 -26604705 - URR1A DNA MER1_type -14 212 1 7 1599 353 303 0 27 chr3 132995229 132995341 -26604442 + PB1D7 SINE Alu 1 109 -11 7 1599 189 107 0 0 chr3 132995479 132995507 -26604276 + (T)n Simple_repeat Simple_repeat 1 28 0 7 1599 845 163 0 0 chr3 132995700 132995835 -26603948 + B1_Mur3 SINE Alu 2 136 -13 7 1599 3009 36 3 3 chr3 132995951 132996338 -26603445 - MTA_Mm LTR MaLR -5 391 5 7 1599 960 164 76 15 chr3 132996602 132996800 -26602983 + B3 SINE B2 1 210 -6 7 1599 186 43 0 0 chr3 132998633 132998656 -26601127 + (T)n Simple_repeat Simple_repeat 1 23 0 7 1599 1422 85 21 0 chr3 132999114 132999303 -26600480 - B2_Mm2 SINE B2 -2 193 1 7 1599 236 30 30 0 chr3 132999667 132999700 -26600083 + (GTTTG)n Simple_repeat Simple_repeat 2 35 0 7 1599 1109 29 0 7 chr3 132999700 132999839 -26599944 - B1_Mus2 SINE Alu -9 138 1 7 1599 948 236 34 5 chr3 133000124 133000333 -26599450 + B3 SINE B2 2 216 0 1 1599 360 0 0 0 chr3 133001022 133001062 -26598721 + (TG)n Simple_repeat Simple_repeat 2 41 0 2 1599 570 261 20 60 chr3 133002772 133002972 -26596811 + B4 SINE B4 95 286 -6 3 1599 414 0 0 0 chr3 133003020 133003066 -26596717 + (CA)n Simple_repeat Simple_repeat 2 47 0 4 1599 47 19 0 0 chr3 133005047 133005101 -26594682 + AT_rich Low_complexity Low_complexity 1 54 0 5 1599 3788 90 4 2 chr3 133005101 133005613 -26594170 - Lx3A LINE L1 -57 6924 6412 6 1599 698 43 11 0 chr3 133006076 133006170 -26593613 + (TG)n Simple_repeat Simple_repeat 2 96 0 7 1599 524 155 68 0 chr3 133006186 133006289 -26593494 - B1_Mur4 SINE Alu -5 145 36 8 1599 24 0 0 0 chr3 133006377 133006401 -26593382 + AT_rich Low_complexity Low_complexity 1 24 0 9 1599 1769 124 9 45 chr3 133006488 133006818 -26592965 + ORR1A3 LTR MaLR 1 318 -8 1 1599 4988 169 62 9 chr3 133008854 133009776 -26590007 + Lx3C LINE L1 5961 6931 -45 1 1599 31 0 0 0 chr3 133009789 133009820 -26589963 + AT_rich Low_complexity Low_complexity 1 31 0 1 1599 669 245 59 55 chr3 133009973 133010262 -26589521 - B4 SINE B4 -2 290 1 1 1599 225 196 0 0 chr3 133011449 133011495 -26588288 + C-rich Low_complexity Low_complexity 3 48 0 1 1599 375 259 52 42 chr3 133011752 133011945 -26587838 - RMER15 LTR ERVL -21 554 360 1 1599 2838 225 67 38 chr3 133012272 133013039 -26586744 - Lx8 LINE L1 -353 7120 6332 1 1599 350 277 68 47 chr3 133013047 133013195 -26586588 - RMER13A LTR ERVK -12 848 698 1 1599 548 252 29 47 chr3 133013298 133013507 -26586276 - RMER13A LTR ERVK -387 521 309 1 1599 1327 190 100 30 chr3 133013507 133013838 -26585945 - RMER13A LTR ERVK -506 354 1 1 1599 285 261 93 52 chr3 133013840 133013937 -26585846 - Lx8 LINE L1 -1151 6322 6222 1 1599 491 244 115 14 chr3 133016693 133016942 -26582841 - Lx8 LINE L1 -1668 5976 5670 1 1599 402 253 149 12 chr3 133016945 133017113 -26582670 - B4A SINE B4 -90 202 12 1 1599 354 162 46 31 chr3 133017117 133017214 -26582569 - L1_Mm LINE L1 -758 5426 5342 1 1599 1143 119 0 0 chr3 133017278 133017454 -26582329 + (TA)n Simple_repeat Simple_repeat 2 177 0 2 1599 370 193 211 75 chr3 133017465 133017678 -26582105 - Lx9 LINE L1 -6 7638 7397 2 1599 411 273 18 0 chr3 133018152 133018262 -26581521 + PB1D7 SINE Alu 1 112 -8 2 1599 4315 95 0 23 chr3 133018960 133019572 -26580211 - L1_Mus4 LINE L1 0 6636 6039 2 1599 768 78 21 117 chr3 133019572 133019717 -26580066 + L1_Mus4 LINE L1 5931 6061 -575 2 1599 860 127 6 0 chr3 133020003 133020168 -26579615 + (GGGA)n Simple_repeat Simple_repeat 4 169 0 2 1599 1236 41 0 0 chr3 133021952 133022098 -26577685 + B1_Mus1 SINE Alu 3 148 0 2 1599 224 290 199 26 chr3 133022794 133022985 -26576798 + L2c LINE L2 3107 3330 -57 2 1599 760 239 58 24 chr3 133022993 133023199 -26576584 - ID_B1 SINE B4 -10 214 2 2 1599 230 311 162 0 chr3 133023691 133023839 -26575944 - L1MD LINE L1 -2309 5686 5515 2 1599 459 275 69 65 chr3 133023911 133024156 -26575627 - L1MEf LINE L1 -4532 1668 1423 2 1599 214 265 0 0 chr3 133024169 133024218 -26575565 + CT-rich Low_complexity Low_complexity 2 50 0 3 1599 699 175 16 0 chr3 133024283 133024409 -26575374 + B1_Mur3 SINE Alu 22 149 0 3 1599 531 254 67 0 chr3 133024467 133024601 -26575182 + B1_Mur2 SINE Alu 6 148 -1 3 1599 4130 170 111 22 chr3 133024682 133025409 -26574374 - Lx7 LINE L1 -1656 6040 5246 3 1599 2136 8 0 0 chr3 133025409 133025645 -26574138 - L1Md_A LINE L1 0 6582 6347 3 1599 4130 167 130 22 chr3 133025645 133026010 -26573773 - Lx7 LINE L1 -635 5245 4847 3 1599 715 73 10 0 chr3 133026023 133026119 -26573664 - Lx7 LINE L1 -1349 4531 4435 3 1599 291 247 0 0 chr3 133026138 133026215 -26573568 + CT-rich Low_complexity Low_complexity 1 77 0 3 1599 772 163 47 47 chr3 133026228 133026376 -26573407 - B1_Mur2 SINE Alu 0 149 2 3 1599 911 197 93 0 chr3 133026736 133026929 -26572854 + B3 SINE B2 1 211 -5 3 1599 369 316 62 40 chr3 133027051 133027278 -26572505 - Tigger13a DNA MER2_type -386 385 154 3 1599 1089 35 35 14 chr3 133028939 133029083 -26570700 + B1_Mus2 SINE Alu 1 147 0 3 1599 204 40 0 0 chr3 133029083 133029108 -26570675 + (A)n Simple_repeat Simple_repeat 1 25 0 4 1599 633 181 94 0 chr3 133030378 133030505 -26569278 + B1_Mm SINE Alu 1 139 -8 4 1599 432 0 0 0 chr3 133030505 133030553 -26569230 + (CAAAC)n Simple_repeat Simple_repeat 2 49 0 4 1599 450 0 0 0 chr3 133031730 133031780 -26568003 + (CA)n Simple_repeat Simple_repeat 1 50 0 4 1599 596 246 20 94 chr3 133032412 133032614 -26567169 + B3A SINE B2 5 191 -7 4 1599 387 0 0 0 chr3 133032963 133033006 -26566777 + (CA)n Simple_repeat Simple_repeat 2 44 0 4 1599 337 315 9 36 chr3 133033887 133033999 -26565784 + RSINE1 SINE B4 44 152 -13 4 1599 246 62 0 0 chr3 133034656 133034688 -26565095 + (CA)n Simple_repeat Simple_repeat 2 33 0 4 1599 331 272 0 112 chr3 133034928 133035044 -26564739 - PB1 SINE Alu -2 125 23 4 1599 1106 168 104 0 chr3 133035217 133035419 -26564364 + URR1B DNA MER1_type 1 223 -2 4 1599 23 0 0 0 chr3 133035543 133035566 -26564217 + AT_rich Low_complexity Low_complexity 1 23 0 5 1599 1102 158 34 15 chr3 133036030 133036236 -26563547 - B3 SINE B2 -4 212 3 5 1599 235 305 56 61 chr3 133037434 133037647 -26562136 - L2a LINE L2 -78 3348 3137 5 1599 259 293 0 0 chr3 133037750 133037808 -26561975 + B1F SINE Alu 55 112 -37 5 1599 247 296 36 24 chr3 133037885 133037968 -26561815 + L1MC LINE L1 5447 5530 -2352 5 1600 615 100 30 10 chr3 133038574 133038675 -26561108 - B1_Mur4 SINE Alu -21 129 27 5 1600 453 19 0 0 chr3 133038786 133038840 -26560943 + (TC)n Simple_repeat Simple_repeat 2 55 0 5 1600 377 297 40 0 chr3 133039621 133039722 -26560061 - RSINE1 SINE B4 -60 105 1 5 1600 1326 52 0 0 chr3 133041506 133041818 -26557965 + (CA)n Simple_repeat Simple_repeat 1 312 0 5 1600 301 254 0 0 chr3 133042327 133042398 -26557385 - MIRb SINE MIR -139 129 59 5 1600 850 263 67 30 chr3 133042548 133042815 -26556968 - B4 SINE B4 -14 278 2 6 1600 258 32 0 0 chr3 133042945 133042976 -26556807 + (TTGG)n Simple_repeat Simple_repeat 2 32 0 6 1600 948 210 229 12 chr3 133042978 133043306 -26556477 + MTD LTR MaLR 18 416 -3 6 1600 4662 56 35 5 chr3 133043355 133043951 -26555832 + L1_Mus1 LINE L1 5953 6566 -1 6 1600 183 171 76 0 chr3 133043981 133044139 -26555644 + (TA)n Simple_repeat Simple_repeat 1 170 0 6 1600 884 115 31 0 chr3 133045938 133046068 -26553715 + B1_Mus1 SINE Alu 1 134 -14 6 1600 246 62 0 0 chr3 133046535 133046567 -26553216 + (TTG)n Simple_repeat Simple_repeat 2 33 0 6 1600 225 154 73 55 chr3 133048012 133048067 -26551716 - PB1D10 SINE Alu 0 117 62 6 1600 482 269 34 54 chr3 133048022 133048171 -26551612 - ID_B1 SINE B4 -7 217 72 6 1600 235 391 109 0 chr3 133048515 133048625 -26551158 + B1F2 SINE Alu 2 123 -26 6 1600 348 287 21 11 chr3 133048631 133048726 -26551057 + PB1D10 SINE Alu 1 96 -21 7 1600 498 79 0 0 chr3 133049042 133049118 -26550665 + (GGTTG)n Simple_repeat Simple_repeat 2 77 0 7 1600 910 222 57 75 chr3 133049837 133050119 -26549664 + Lx8 LINE L1 6994 7270 -203 7 1600 1097 138 29 0 chr3 133050846 133051020 -26548763 + B2_Mm1t SINE B2 1 179 -14 7 1600 330 80 313 35 chr3 133051071 133051186 -26548597 + B2_Mm2 SINE B2 47 193 -2 7 1600 186 43 0 0 chr3 133051326 133051349 -26548434 + (T)n Simple_repeat Simple_repeat 1 23 0 7 1600 1205 56 0 0 chr3 133051349 133051493 -26548290 - B1_Mus1 SINE Alu 0 148 5 7 1600 212 0 36 0 chr3 133052517 133052545 -26547238 + (TTG)n Simple_repeat Simple_repeat 2 30 0 7 1600 1389 57 40 0 chr3 133053724 133053900 -26545883 - B2_Mm1a SINE B2 -9 184 2 7 1600 3157 64 7 10 chr3 133054008 133054416 -26545367 + MTB_Mm LTR MaLR 1 407 0 7 1600 1448 180 38 22 chr3 133055693 133056011 -26543772 - ORR1A2 LTR MaLR 0 327 16 8 1600 2257 210 74 39 chr3 133056222 133056716 -26543067 - Lx5 LINE L1 -560 6490 5971 8 1600 1263 68 0 0 chr3 133056716 133056864 -26542919 - B1_Mus1 SINE Alu 0 148 1 8 1600 2244 210 74 39 chr3 133056864 133056910 -26542873 - Lx5 LINE L1 -1080 5970 5931 8 1600 2669 130 6 3 chr3 133056909 133057397 -26542386 + Lx5 LINE L1 5462 5958 -1092 8 1600 1302 247 32 7 chr3 133057487 133057768 -26542015 + ORR1E LTR MaLR 9 296 -63 8 1600 2718 221 25 11 chr3 133057950 133058475 -26541308 + Lx5 LINE L1 6514 7045 -5 8 1600 648 325 0 12 chr3 133058506 133058664 -26541119 + ID_B1 SINE B4 3 158 -66 8 1600 2246 161 38 8 chr3 133058664 133058677 -26541106 - MTB_Mm LTR MaLR 0 407 397 8 1600 2677 101 11 0 chr3 133058677 133059034 -26540749 - Lx2 LINE L1 0 6997 6637 8 1600 2246 161 38 8 chr3 133059034 133059415 -26540368 - MTB_Mm LTR MaLR -11 396 2 8 1600 4453 152 105 13 chr3 133059415 133060253 -26539530 - MTB_Mm-int LTR MaLR 0 1258 344 8 1600 1010 144 109 31 chr3 133060265 133060458 -26539325 - ORR1B1 LTR MaLR -186 208 1 8 1600 326 280 0 0 chr3 133060458 133060529 -26539254 + ID_B1 SINE B4 154 224 0 8 1600 424 279 22 52 chr3 133060622 133060730 -26539053 - MER5A1 DNA MER1_type -7 159 53 8 1600 194 0 39 0 chr3 133060730 133060756 -26539027 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 8 1600 424 279 22 52 chr3 133060756 133060783 -26539000 - MER5A1 DNA MER1_type -114 52 28 8 1600 2699 34 12 0 chr3 133061564 133061891 -26537892 - IAPEY_LTR LTR ERVK 0 385 55 9 1600 352 311 72 108 chr3 133061958 133062236 -26537547 + ORR1E LTR MaLR 6 273 -86 9 1600 1145 76 7 27 chr3 133062407 133062556 -26537227 + B1_Mus1 SINE Alu 1 146 -2 9 1600 658 303 25 15 chr3 133062562 133062760 -26537023 + RMER30 DNA MER1_type 3 202 0 9 1600 981 256 177 3 chr3 133063210 133063532 -26536251 - MTEb LTR MaLR 0 379 2 9 1600 224 189 0 0 chr3 133063836 133063873 -26535910 + polypyrimidine Low_complexity Low_complexity 3 39 0 9 1600 3799 10 2 0 chr3 133064130 133064525 -26535258 + MTA_Mm LTR MaLR 1 396 0 9 1600 10323 15 0 0 chr3 133064525 133065623 -26534160 + MTA_Mm-int LTR MaLR 1 1098 0 9 1600 3799 10 2 0 chr3 133065623 133066018 -26533765 + MTA_Mm LTR MaLR 1 396 0 9 1600 195 100 0 0 chr3 133066060 133066090 -26533693 + (TG)n Simple_repeat Simple_repeat 1 30 0 9 1600 682 311 16 53 chr3 133066090 133066280 -26533503 - B3 SINE B2 -32 184 2 9 1600 246 269 20 61 chr3 133066302 133066401 -26533382 - L1M5 LINE L1 -445 5679 5585 9 1600 425 50 0 16 chr3 133068077 133068138 -26531645 + (TA)n Simple_repeat Simple_repeat 1 60 0 1 1600 2050 135 6 102 chr3 133068527 133068889 -26530894 - ORR1A4 LTR MaLR 0 329 3 1 1600 435 276 8 57 chr3 133069117 133069240 -26530543 - PB1D10 SINE Alu 0 117 1 1 1600 679 299 151 4 chr3 133069299 133069531 -26530252 - B4A SINE B4 -2 290 25 1 1600 1149 222 14 5 chr3 133069672 133069885 -26529898 + B3 SINE B2 1 215 -1 1 1600 28 29 0 0 chr3 133069891 133069926 -26529857 + AT_rich Low_complexity Low_complexity 1 35 0 1 1600 255 125 0 0 chr3 133069983 133070023 -26529760 + (TA)n Simple_repeat Simple_repeat 1 40 0 1 1600 360 59 0 0 chr3 133070024 133070075 -26529708 + (CAGA)n Simple_repeat Simple_repeat 2 52 0 1 1600 302 285 108 48 chr3 133070083 133070249 -26529534 + MLT2C1 LTR ERVL 30 205 -192 1 1600 642 314 98 77 chr3 133070105 133070613 -26529170 + MLT1E2 LTR MaLR 75 595 -32 1 1600 21 0 0 0 chr3 133070797 133070818 -26528965 + AT_rich Low_complexity Low_complexity 1 21 0 1 1600 324 314 49 33 chr3 133070881 133071003 -26528780 - MIRb SINE MIR -8 260 137 1 1600 604 212 44 0 chr3 133071082 133071195 -26528588 - PB1 SINE Alu -9 118 1 1 1600 413 307 9 9 chr3 133071731 133071846 -26527937 + PB1D9 SINE Alu 1 115 -5 1 1600 566 319 65 73 chr3 133072017 133072399 -26527384 - RLTR26 LTR ERVK -167 475 97 1 1600 435 266 171 7 chr3 133073065 133073205 -26526578 - RSINE1 SINE B4 0 165 3 1 1600 455 276 8 33 chr3 133073673 133073793 -26525990 + PB1D10 SINE Alu 1 117 0 1 1600 440 291 93 13 chr3 133074416 133074566 -26525217 + MER2 DNA MER2_type 170 331 -14 1 1600 4861 70 32 11 chr3 133075771 133076388 -26523395 + L1Md_F2 LINE L1 5944 6573 -9 1 1600 189 0 0 0 chr3 133076390 133076411 -26523372 + (T)n Simple_repeat Simple_repeat 1 21 0 1 1600 1146 29 0 0 chr3 133076411 133076550 -26523233 - B1_Mus1 SINE Alu 0 148 10 1 1600 210 152 14 70 chr3 133077024 133077095 -26522688 + A-rich Low_complexity Low_complexity 4 70 0 1 1600 314 270 50 0 chr3 133077750 133077850 -26521933 + BC1_Mm scRNA scRNA 1 105 -47 1 1600 3946 43 10 0 chr3 133078069 133078620 -26521163 + L1_Mus1 LINE L1 5499 6054 -513 1 1600 2551 79 9 0 chr3 133078620 133078938 -26520845 + L1_Mus1 LINE L1 6247 6567 0 1 1600 207 0 0 0 chr3 133079067 133079090 -26520693 + (TTA)n Simple_repeat Simple_repeat 2 24 0 1 1600 5351 215 69 6 chr3 133079091 133080189 -26519594 - Lx6 LINE L1 -37 7423 6256 1 1600 3504 136 27 48 chr3 133080190 133080854 -26518929 - L1_Mur3 LINE L1 -330 5550 4901 1 1600 2260 128 6 9 chr3 133080854 133081184 -26518599 - RMER13A LTR ERVK -531 329 1 1 1600 410 218 0 0 chr3 133081184 133081271 -26518512 - L1_Mur3 LINE L1 -1200 4680 4594 1 1600 1190 51 0 0 chr3 133081271 133081408 -26518375 + B1_Mus2 SINE Alu 1 137 -10 1 1600 293 0 27 0 chr3 133081408 133081445 -26518338 + (CAAAA)n Simple_repeat Simple_repeat 2 39 0 1 1600 1026 234 116 37 chr3 133083189 133083544 -26516239 + Lx8 LINE L1 7091 7473 0 1 1600 5929 116 20 33 chr3 133083695 133084629 -26515154 + MurERV4_19-int LTR ERVK 2394 3315 -2465 1 1600 1887 179 29 31 chr3 133084629 133085070 -26514713 + RMER19B LTR ERVK 130 664 -238 1 1600 609 298 5 5 chr3 133085109 133085318 -26514465 - L1_Mur3 LINE L1 -1146 4734 4526 1 1600 348 300 10 0 chr3 133085319 133085419 -26514364 + L1_Mur3 LINE L1 5049 5149 -731 1 1600 273 284 39 10 chr3 133085422 133085525 -26514258 + L1M3 LINE L1 3416 3521 -2622 1 1600 521 281 98 92 chr3 133085535 133085719 -26514064 + B3A SINE B2 12 196 -2 1 1600 971 270 256 30 chr3 133085746 133086640 -26513143 + L1M3 LINE L1 3514 4609 -1531 1 1600 5898 243 93 28 chr3 133086657 133088148 -26511635 - Lx6 LINE L1 -1306 6167 4594 1 1600 1402 104 16 0 chr3 133088148 133088330 -26511453 + B2_Mm2 SINE B2 3 187 -8 1 1600 5898 229 78 22 chr3 133088330 133088821 -26510962 - Lx6 LINE L1 -1287 4593 4040 1 1600 459 256 17 0 chr3 133088873 133088990 -26510793 - Lx6 LINE L1 -3280 2600 2482 1 1600 811 190 0 7 chr3 133088990 133089133 -26510650 - B1_Mur1 SINE Alu 0 149 8 1 1600 319 263 23 92 chr3 133089020 133089150 -26510633 - MT2B LTR ERVL -325 276 156 1 1600 712 209 44 17 chr3 133089156 133089336 -26510447 - Lx6 LINE L1 -3407 2473 2289 1 1600 1717 209 19 48 chr3 133089361 133089678 -26510105 - ORR1D1 LTR MaLR -13 361 55 1 1600 1953 118 16 128 chr3 133089678 133090046 -26509737 + ORR1A4 LTR MaLR 3 329 0 1 1600 1717 209 19 48 chr3 133090046 133090100 -26509683 - ORR1D1 LTR MaLR -320 54 1 1 1600 1486 282 33 24 chr3 133090101 133090678 -26509105 - Lx6 LINE L1 -3603 2277 1696 1 1600 1001 258 53 0 chr3 133090670 133090992 -26508791 + L1MA4 LINE L1 5586 5924 -376 1 1600 189 0 0 0 chr3 133091226 133091247 -26508536 + (T)n Simple_repeat Simple_repeat 1 21 0 1 1600 212 167 0 0 chr3 133091378 133091420 -26508363 + A-rich Low_complexity Low_complexity 1 42 0 1 1600 1662 169 19 122 chr3 133091434 133091534 -26508249 - RMER6B LTR ERVK -85 376 308 1 1600 243 0 0 0 chr3 133091534 133091561 -26508222 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 1 1600 1662 169 19 122 chr3 133091561 133091879 -26507904 - RMER6B LTR ERVK -154 307 1 1 1600 477 0 0 0 chr3 133092619 133092672 -26507111 + (TC)n Simple_repeat Simple_repeat 2 54 0 1 1600 432 0 0 0 chr3 133092672 133092719 -26507064 + (TG)n Simple_repeat Simple_repeat 1 48 0 1 1600 367 208 42 0 chr3 133093176 133093248 -26506535 - Tigger5 DNA MER2_type -21 2385 2311 1 1600 267 343 106 92 chr3 133093252 133093452 -26506331 - Tigger5 DNA MER2_type -2164 242 35 1 1600 2816 34 71 0 chr3 133093452 133093775 -26506008 + ORR1A1 LTR MaLR 1 346 0 1 1600 267 343 106 92 chr3 133093775 133093792 -26505991 - Tigger5 DNA MER2_type -2372 34 22 1 1600 597 256 0 131 chr3 133094438 133094553 -26505230 + RMER19B LTR ERVK 1 90 -647 1 1600 4526 23 12 0 chr3 133094553 133095040 -26504743 - MT2_Mm LTR ERVL 0 493 1 1 1600 597 256 0 131 chr3 133095040 133095122 -26504661 + RMER19B LTR ERVK 91 172 -565 1 1600 11723 50 8 1 chr3 133095122 133096795 -26502988 - L1Md_F3 LINE L1 -496 6088 4411 1 1600 4320 41 2 4 chr3 133096795 133097283 -26502500 + L1Md_F3 LINE L1 6084 6570 -14 1 1600 22 0 0 0 chr3 133097287 133097309 -26502474 + AT_rich Low_complexity Low_complexity 1 22 0 1 1600 3555 200 80 11 chr3 133097309 133098018 -26501765 + RMER19B LTR ERVK 131 888 -14 1 1600 300 195 39 0 chr3 133098030 133098107 -26501676 - MER45B DNA Tip100 -149 891 812 1 1600 274 359 34 17 chr3 133098402 133098521 -26501262 - MER45C DNA Tip100 -335 618 498 1 1600 459 371 6 18 chr3 133098640 133098669 -26501114 + ID SINE ID 53 79 -145 1 1600 481 319 28 7 chr3 133098669 133098811 -26500972 + B1F SINE Alu 1 145 -4 1 1600 1030 174 113 0 chr3 133099340 133099535 -26500248 - URR1A DNA MER1_type 0 226 10 1 1600 271 288 12 12 chr3 133100829 133100910 -26498873 + ID4_ SINE ID 3 83 0 1 1600 6785 55 6 37 chr3 133100926 133101774 -26498009 - RLTR13B2 LTR ERVK 0 822 1 1 1600 194 0 0 37 chr3 133101971 133101998 -26497785 + (TAA)n Simple_repeat Simple_repeat 3 28 0 1 1600 442 287 19 0 chr3 133102442 133102550 -26497233 - PB1D10 SINE Alu -7 110 1 1 1600 198 91 0 0 chr3 133102596 133102629 -26497154 + (T)n Simple_repeat Simple_repeat 1 33 0 1 1600 588 250 143 29 chr3 133102906 133103368 -26496415 - L1M3 LINE L1 -2251 3889 3325 1 1600 255 309 52 0 chr3 133103360 133103457 -26496326 - L1MC1 LINE L1 -1 6332 6231 1 1600 360 64 0 0 chr3 133103458 133103505 -26496278 + (TTA)n Simple_repeat Simple_repeat 1 47 0 1 1600 3320 230 86 70 chr3 133103907 133104056 -26495727 - Lx7 LINE L1 0 7696 7552 1 1600 270 0 0 0 chr3 133104056 133104086 -26495697 + (TAAAA)n Simple_repeat Simple_repeat 2 31 0 1 1600 3320 230 86 70 chr3 133104086 133105031 -26494752 - Lx7 LINE L1 -145 7551 6585 1 1600 1506 206 26 7 chr3 133105034 133105341 -26494442 - Lx7 LINE L1 -1732 5964 5652 1 1600 748 74 18 27 chr3 133105339 133105450 -26494333 - L1_Mur3 LINE L1 -3367 2513 2404 1 1600 2781 119 15 2 chr3 133105441 133105845 -26493938 - L1_Mur2 LINE L1 -85 5792 5384 1 1600 272 103 0 0 chr3 133105846 133105885 -26493898 + Lx5 LINE L1 6382 6420 -630 1 1600 328 261 0 0 chr3 133105953 133106022 -26493761 - ID4_ SINE ID -10 73 5 1 1600 1092 277 125 22 chr3 133106022 133106558 -26493225 - L1MB4 LINE L1 -289 5891 5301 1 1600 2675 291 69 99 chr3 133106824 133107649 -26492134 - Lx8 LINE L1 -5 7468 6639 1 1600 961 214 38 14 chr3 133107649 133107858 -26491925 - B3 SINE B2 -2 214 1 1 1600 2675 291 69 99 chr3 133107858 133107911 -26491872 - Lx8 LINE L1 -835 6638 6585 1 1600 288 180 16 16 chr3 133107911 133107973 -26491810 - B3 SINE B2 -6 210 149 1 1600 2675 291 69 99 chr3 133107973 133108422 -26491361 - Lx8 LINE L1 -835 6584 6121 1 1600 510 17 0 0 chr3 133108504 133108563 -26491220 + (GA)n Simple_repeat Simple_repeat 1 59 0 1 1600 247 290 28 48 chr3 133108778 133108923 -26490860 - L1MB4 LINE L1 -6414 193 52 1 1600 29 0 0 0 chr3 133109015 133109044 -26490739 + AT_rich Low_complexity Low_complexity 1 29 0 1 1600 27231 98 29 18 chr3 133109044 133115337 -26484446 - L1Md_F2 LINE L1 -5 6577 238 1 1600 903 158 29 0 chr3 133115651 133115790 -26483993 + B1_Mur4 SINE Alu 1 143 -7 1 1600 225 0 0 0 chr3 133115790 133115815 -26483968 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 1 1600 263 328 66 115 chr3 133116095 133116381 -26483402 - L1ME3A LINE L1 -51 6122 5851 1 1600 381 239 65 11 chr3 133117637 133117730 -26482053 + PB1D10 SINE Alu 1 98 -19 1 1600 189 0 0 0 chr3 133117785 133117806 -26481977 + (CG)n Simple_repeat Simple_repeat 1 21 0 1 1600 330 26 0 0 chr3 133117806 133117844 -26481939 + (TG)n Simple_repeat Simple_repeat 1 39 0 1 1600 351 65 0 0 chr3 133118154 133118200 -26481583 + (TC)n Simple_repeat Simple_repeat 1 46 0 1 1600 486 0 0 0 chr3 133118200 133118254 -26481529 + (TG)n Simple_repeat Simple_repeat 1 54 0 1 1600 220 228 105 0 chr3 133118299 133118356 -26481427 - RSINE1 SINE B4 -30 135 73 1 1600 23 54 0 0 chr3 133118485 133118522 -26481261 + AT_rich Low_complexity Low_complexity 1 37 0 1 1600 906 200 97 26 chr3 133118532 133118727 -26481056 - B3 SINE B2 -6 210 2 1 1600 350 269 55 129 chr3 133118731 133118987 -26480796 - L1M3 LINE L1 -1127 5016 4780 1 1600 702 221 7 22 chr3 133119111 133119250 -26480533 + B1_Mur3 SINE Alu 13 149 0 1 1600 1297 319 102 51 chr3 133119273 133120564 -26479219 - L1M3 LINE L1 -1503 4637 3257 1 1600 198 0 0 0 chr3 133120564 133120586 -26479197 + (TTTG)n Simple_repeat Simple_repeat 3 24 0 1 1600 1297 319 102 51 chr3 133120586 133120660 -26479123 - L1M3 LINE L1 -2884 3256 3202 1 1600 361 200 10 40 chr3 133120647 133120746 -26479037 + Lx9 LINE L1 7548 7643 -1 1 1600 348 289 49 65 chr3 133120755 133120817 -26478966 - L1M3 LINE L1 -2934 3209 3147 1 1600 775 139 118 24 chr3 133120817 133120987 -26478796 - B2_Mm2 SINE B2 -8 187 2 1 1600 348 289 49 65 chr3 133120987 133121109 -26478674 - L1M3 LINE L1 -2997 3146 3028 1 1600 503 177 20 20 chr3 133121128 133121226 -26478557 + B1_Mus1 SINE Alu 1 98 -50 1 1600 627 14 0 0 chr3 133121226 133121298 -26478485 + (TC)n Simple_repeat Simple_repeat 1 72 0 1 1600 934 273 0 5 chr3 133121301 133121500 -26478283 - B3 SINE B2 -18 198 1 2 1600 367 225 32 98 chr3 133121500 133121520 -26478263 + PB1D9 SINE Alu 99 115 -5 2 1600 420 268 57 89 chr3 133121611 133121926 -26477857 - L1_Mur3 LINE L1 -2873 3007 2703 2 1600 1503 78 11 0 chr3 133122627 133122818 -26476965 - B2_Mm1t SINE B2 0 193 1 2 1600 327 202 14 44 chr3 133122966 133123060 -26476723 - B1_Mus1 SINE Alu -63 86 1 2 1600 242 221 138 128 chr3 133123060 133123091 -26476692 - MT2B LTR ERVL -449 152 121 2 1600 1085 48 14 0 chr3 133123195 133123340 -26476443 - B1_Mus1 SINE Alu 0 148 2 2 1600 480 18 0 0 chr3 133123696 133123753 -26476030 + (TGG)n Simple_repeat Simple_repeat 2 58 0 2 1600 250 311 0 13 chr3 133123899 133123974 -26475809 - ORR1D1 LTR MaLR -292 82 9 2 1600 526 252 111 13 chr3 133124270 133124423 -26475360 + B3 SINE B2 1 168 -48 2 1600 704 248 0 21 chr3 133124520 133124664 -26475119 + B1_Mus2 SINE Alu 2 142 -5 2 1600 295 176 207 69 chr3 133126054 133126170 -26473613 + B1_Mus1 SINE Alu 16 147 -1 2 1600 28 0 0 0 chr3 133126648 133126676 -26473107 + AT_rich Low_complexity Low_complexity 1 28 0 2 1600 201 108 0 0 chr3 133126873 133126910 -26472873 + (A)n Simple_repeat Simple_repeat 1 37 0 2 1600 270 0 0 0 chr3 133127322 133127352 -26472431 + (TG)n Simple_repeat Simple_repeat 1 30 0 2 1600 186 43 0 0 chr3 133127910 133127933 -26471850 + (A)n Simple_repeat Simple_repeat 1 23 0 2 1600 289 62 42 0 chr3 133128114 133128162 -26471621 + (TA)n Simple_repeat Simple_repeat 2 51 0 2 1600 183 80 0 0 chr3 133133039 133133064 -26466719 + (A)n Simple_repeat Simple_repeat 1 25 0 2 1600 663 254 149 14 chr3 133133639 133133847 -26465936 - B4A SINE B4 -53 239 4 2 1600 325 258 63 69 chr3 133133857 133134006 -26465777 - B3A SINE B2 -3 192 45 2 1600 341 111 14 0 chr3 133134594 133134666 -26465117 - Lx9 LINE L1 -33 7611 7539 2 1600 279 321 44 7 chr3 133134919 133135054 -26464729 + L1M2 LINE L1 5128 5267 -876 2 1600 346 245 215 9 chr3 133135640 133135747 -26464036 + B3A SINE B2 3 131 -67 2 1600 4177 57 45 4 chr3 133135838 133136347 -26463436 + L1Md_F2 LINE L1 6051 6580 -2 2 1600 294 174 167 71 chr3 133136386 133136499 -26463284 + B1_Mus2 SINE Alu 2 147 0 2 1600 336 313 141 13 chr3 133137271 133137420 -26462363 + B3A SINE B2 1 168 -30 2 1600 351 292 122 56 chr3 133137396 133137592 -26462191 + B4A SINE B4 27 235 -57 2 1600 822 81 184 8 chr3 133137703 133137828 -26461955 + B1_Mus1 SINE Alu 2 148 0 2 1600 492 128 0 0 chr3 133137828 133137906 -26461877 + (GAAA)n Simple_repeat Simple_repeat 2 79 0 2 1600 29 28 0 0 chr3 133137920 133137956 -26461827 + AT_rich Low_complexity Low_complexity 1 36 0 2 1600 834 141 0 23 chr3 133138462 133138593 -26461190 - B3 SINE B2 -88 128 1 2 1600 217 219 0 7 chr3 133138842 133138894 -26460889 - PB1D7 SINE Alu -5 144 74 2 1600 727 203 283 6 chr3 133138929 133139251 -26460532 + MTD LTR MaLR 1 413 -6 2 1600 28 48 0 0 chr3 133139283 133139325 -26460458 + AT_rich Low_complexity Low_complexity 1 42 0 2 1600 341 226 225 6 chr3 133139901 133140061 -26459722 + L1_Mur3 LINE L1 3579 3773 -2107 2 1600 429 258 162 29 chr3 133140314 133140450 -26459333 + B3A SINE B2 42 195 -3 2 1600 459 226 332 8 chr3 133140604 133140892 -26458891 + L1M2 LINE L1 4567 4963 -1180 2 1600 477 195 33 25 chr3 133140957 133141078 -26458705 - MTE2b LTR MaLR -242 137 16 2 1600 482 271 117 72 chr3 133141124 133141532 -26458251 + L1_Mur3 LINE L1 5182 5645 -655 2 1600 1188 85 85 0 chr3 133142526 133142690 -26457093 + B2_Mm1t SINE B2 2 179 -14 2 1600 419 76 312 10 chr3 133142719 133142823 -26456960 + B2_Mm2 SINE B2 49 187 -8 2 1600 851 148 0 28 chr3 133143479 133143660 -26456123 + GA-rich Low_complexity Low_complexity 3 178 0 2 1600 186 43 0 0 chr3 133143671 133143694 -26456089 + (GGAA)n Simple_repeat Simple_repeat 4 26 0 2 1600 765 209 232 16 chr3 133143900 133144085 -26455698 - URR1B DNA MER1_type 0 225 1 2 1600 1617 53 16 0 chr3 133144522 133144711 -26455072 + B2_Mm2 SINE B2 1 192 -3 2 1600 684 150 0 59 chr3 133145336 133145471 -26454312 - B1_Mus1 SINE Alu -21 127 1 2 1600 771 141 73 12 chr3 133146545 133146710 -26453073 - L1_Mur1 LINE L1 -2393 3493 3319 2 1600 6285 145 144 21 chr3 133146687 133148253 -26451530 + Lx3B LINE L1 4761 6552 -457 2 1600 189 0 0 0 chr3 133149538 133149559 -26450224 + (CTG)n Simple_repeat Simple_repeat 1 21 0 2 1600 530 280 45 26 chr3 133152354 133152492 -26447291 + RSINE1 SINE B4 5 146 -19 2 1600 465 19 0 0 chr3 133152492 133152546 -26447237 + (TATG)n Simple_repeat Simple_repeat 2 55 0 2 1600 530 280 45 26 chr3 133152546 133152561 -26447222 + RSINE1 SINE B4 147 161 -4 2 1600 519 60 0 0 chr3 133152713 133152780 -26447003 + (CA)n Simple_repeat Simple_repeat 1 67 0 2 1600 474 171 88 3 chr3 133153007 133153125 -26446658 + B1F2 SINE Alu 5 139 -10 2 1600 351 0 0 0 chr3 133153871 133153910 -26445873 + (CA)n Simple_repeat Simple_repeat 2 40 0 2 1600 495 178 22 0 chr3 133154797 133154887 -26444896 + B3 SINE B2 2 93 -123 2 1600 8493 19 1 0 chr3 133154887 133156140 -26443643 - L1Md_A LINE L1 -17 6565 5311 2 1600 312 79 0 0 chr3 133156309 133156347 -26443436 + L1Md_F2 LINE L1 5549 5586 -297 2 1600 8702 32 4 6 chr3 133156347 133157319 -26442464 + L1Md_F2 LINE L1 5587 6559 -23 2 1600 231 61 0 0 chr3 133157319 133157352 -26442431 + (TTAA)n Simple_repeat Simple_repeat 3 35 0 2 1600 8702 32 4 6 chr3 133157352 133157364 -26442419 + L1Md_F2 LINE L1 6560 6569 -13 2 1600 4183 94 80 109 chr3 133157601 133157726 -26442057 + L1M2 LINE L1 1466 1593 -4293 2 1600 1238 57 0 0 chr3 133157726 133157867 -26441916 + B1_Mus1 SINE Alu 1 141 -7 2 1600 4183 83 81 117 chr3 133157867 133158664 -26441119 + L1M2 LINE L1 1578 2383 -3760 2 1600 1506 265 41 106 chr3 133158739 133159219 -26440564 - L1_Rod LINE L1 -1222 4625 4170 2 1600 1801 16 0 0 chr3 133159219 133159410 -26440373 + B2_Mm1a SINE B2 1 191 -2 2 1600 1506 265 41 106 chr3 133159410 133159815 -26439968 - L1_Rod LINE L1 -1678 4169 3798 2 1600 423 0 0 0 chr3 133160379 133160426 -26439357 + (CA)n Simple_repeat Simple_repeat 2 48 0 2 1600 180 0 0 0 chr3 133160426 133160445 -26439338 + (GA)n Simple_repeat Simple_repeat 2 21 0 2 1600 850 139 80 0 chr3 133160633 133160770 -26439013 - B1_Mus1 SINE Alu 0 148 1 2 1600 293 82 20 0 chr3 133161153 133161202 -26438581 + (TCCA)n Simple_repeat Simple_repeat 3 52 0 2 1600 420 301 129 22 chr3 133161205 133161344 -26438439 - B4A SINE B4 -35 257 104 2 1600 223 211 228 38 chr3 133161387 133161466 -26438317 - B3A SINE B2 -103 95 2 2 1600 963 191 83 29 chr3 133161703 133161908 -26437875 + B3 SINE B2 1 216 0 2 1600 592 206 77 49 chr3 133161925 133162068 -26437715 + B1_Mur4 SINE Alu 1 147 -3 2 1600 504 32 0 0 chr3 133162178 133162240 -26437543 + (CA)n Simple_repeat Simple_repeat 1 62 0 2 1600 312 27 0 0 chr3 133162721 133162758 -26437025 + (CAATT)n Simple_repeat Simple_repeat 4 40 0 2 1600 969 221 98 15 chr3 133162776 133163042 -26436741 + L1VL2 LINE L1 65 352 -5983 2 1600 7282 142 40 32 chr3 133163033 133164367 -26435416 + L1_Mm LINE L1 4479 5823 -60 2 1600 666 277 33 55 chr3 133164775 133164958 -26434825 + B3A SINE B2 10 188 -10 2 1600 1156 81 13 7 chr3 133164994 133165143 -26434640 + B1_Mur4 SINE Alu 1 150 0 2 1600 960 196 116 5 chr3 133165260 133165450 -26434333 + B3 SINE B2 1 211 -5 2 1600 1530 87 14 0 chr3 133165530 133165737 -26434046 + Lx LINE L1 5887 6096 -558 2 1600 253 278 42 0 chr3 133166034 133166106 -26433677 - B3 SINE B2 -77 139 65 2 1600 278 234 104 13 chr3 133166272 133166372 -26433411 - B1_Mur2 SINE Alu -10 139 22 2 1600 261 295 143 0 chr3 133166382 133166487 -26433296 - ID_B1 SINE B4 -26 198 79 2 1600 180 0 0 0 chr3 133166625 133166645 -26433138 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 2 1600 421 169 62 10 chr3 133166764 133166860 -26432923 - B1_Mur3 SINE Alu -2 147 47 2 1600 216 0 0 93 chr3 133166886 133166929 -26432854 + (TTTTG)n Simple_repeat Simple_repeat 1 39 0 2 1600 441 246 36 18 chr3 133167003 133167115 -26432668 - MTD LTR MaLR -222 197 84 2 1600 189 0 0 0 chr3 133167166 133167187 -26432596 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 2 1600 6592 83 17 19 chr3 133167775 133169145 -26430638 + Lx3A LINE L1 5169 6526 -455 2 1601 269 241 34 57 chr3 133169184 133169272 -26430511 - PB1D7 SINE Alu -29 91 6 2 1601 422 338 117 80 chr3 133169272 133169761 -26430022 - MER21B LTR ERV1 -151 712 206 2 1601 203 309 0 10 chr3 133170073 133170171 -26429612 + (CA)n Simple_repeat Simple_repeat 1 97 0 2 1601 21 0 0 0 chr3 133170192 133170213 -26429570 + AT_rich Low_complexity Low_complexity 1 21 0 2 1601 4123 101 82 0 chr3 133170248 133170855 -26428928 + Lx3B LINE L1 6317 6973 0 2 1601 231 213 0 0 chr3 133170984 133171031 -26428752 - B1F1 SINE Alu -96 53 7 2 1601 229 167 0 45 chr3 133170995 133171039 -26428744 - B4A SINE B4 -165 127 86 2 1601 225 94 0 0 chr3 133171053 133171085 -26428698 + (TTG)n Simple_repeat Simple_repeat 2 33 0 2 1601 1151 50 0 0 chr3 133171085 133171224 -26428559 - B1_Mus1 SINE Alu -9 139 1 2 1601 377 131 214 28 chr3 133171269 133171370 -26428413 + B1_Mur1 SINE Alu 6 134 -15 2 1601 569 252 107 25 chr3 133171987 133172231 -26427552 + Lx9 LINE L1 5813 6076 -1568 2 1601 790 289 25 0 chr3 133172246 133172447 -26427336 + B3 SINE B2 1 206 -10 2 1601 290 231 0 30 chr3 133172447 133172514 -26427269 - L1MD LINE L1 -2288 5707 5643 2 1601 429 20 0 0 chr3 133174015 133174065 -26425718 + (TAGA)n Simple_repeat Simple_repeat 3 52 0 2 1601 520 246 60 60 chr3 133175104 133175255 -26424528 + RSINE1 SINE B4 15 165 0 3 1601 183 100 0 0 chr3 133175267 133175297 -26424486 + (GGGAGA)n Simple_repeat Simple_repeat 1 30 0 3 1601 515 320 7 0 chr3 133175316 133175441 -26424342 + RSINE1 SINE B4 12 137 -28 3 1601 291 55 36 18 chr3 133175441 133175496 -26424287 + (CA)n Simple_repeat Simple_repeat 1 56 0 3 1601 2617 58 61 0 chr3 133175506 133175832 -26423951 - ORR1A1 LTR MaLR 0 346 1 3 1601 515 320 7 0 chr3 133175832 133175848 -26423935 + RSINE1 SINE B4 148 163 -2 3 1601 709 105 36 16 chr3 133175848 133176102 -26423681 + (CA)n Simple_repeat Simple_repeat 1 259 0 3 1601 787 102 16 28 chr3 133176116 133176298 -26423485 + (CA)n Simple_repeat Simple_repeat 1 180 0 3 1601 31 26 0 0 chr3 133176340 133176378 -26423405 + AT_rich Low_complexity Low_complexity 1 38 0 3 1601 413 82 159 14 chr3 133177682 133177786 -26421997 - B2_Mm2 SINE B2 -13 182 46 3 1601 1329 80 11 0 chr3 133177801 133177976 -26421807 - B2_Mm2 SINE B2 -17 178 2 3 1601 267 289 12 12 chr3 133178122 133178206 -26421577 - L1M4 LINE L1 -651 5527 5444 3 1601 2309 86 9 58 chr3 133178648 133178992 -26420791 + ORR1A2 LTR MaLR 1 327 0 3 1601 471 78 0 0 chr3 133179851 133179915 -26419868 + (TG)n Simple_repeat Simple_repeat 2 65 0 3 1601 242 283 131 0 chr3 133179928 133180027 -26419756 - B4A SINE B4 -50 242 131 3 1601 557 224 81 15 chr3 133180236 133180372 -26419411 - B1F SINE Alu -2 147 3 3 1601 797 151 29 0 chr3 133181562 133181701 -26418082 + B1_Mur3 SINE Alu 1 143 -6 3 1601 929 212 201 22 chr3 133181829 133182143 -26417640 + ORR1D2 LTR MaLR 1 370 0 3 1601 1412 80 5 5 chr3 133182189 133182378 -26417405 + B2_Mm2 SINE B2 2 190 -5 3 1601 1246 41 0 0 chr3 133182465 133182612 -26417171 + B1_Mus1 SINE Alu 2 148 0 3 1601 334 130 0 0 chr3 133182665 133182719 -26417064 - B1_Mus2 SINE Alu -27 120 67 3 1601 793 201 75 11 chr3 133182744 133182930 -26416853 - URR1B DNA MER1_type -27 198 1 3 1601 459 279 0 24 chr3 133182980 133183105 -26416678 + B1F2 SINE Alu 1 122 -27 3 1601 780 276 42 14 chr3 133183220 133183390 -26416393 - ID_B1 SINE B4 -5 219 49 3 1601 351 0 0 0 chr3 133183390 133183429 -26416354 + (TG)n Simple_repeat Simple_repeat 2 40 0 3 1601 780 276 42 14 chr3 133183429 133183471 -26416312 - ID SINE ID -176 48 2 3 1601 233 265 56 78 chr3 133184102 133184192 -26415591 + B3A SINE B2 3 90 -108 3 1601 257 266 50 92 chr3 133184344 133184464 -26415319 - PB1D10 SINE Alu 0 117 3 3 1601 1193 36 0 0 chr3 133184501 133184640 -26415143 + B1_Mus1 SINE Alu 1 139 -9 3 1601 247 279 33 0 chr3 133184767 133184828 -26414955 + B1F SINE Alu 8 70 -79 3 1601 191 114 29 0 chr3 133184924 133184959 -26414824 + (TTA)n Simple_repeat Simple_repeat 2 37 0 3 1601 654 221 16 0 chr3 133184963 133185090 -26414693 - B1F2 SINE Alu -16 133 5 3 1601 207 0 0 0 chr3 133185915 133185938 -26413845 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 3 1601 233 263 15 20 chr3 133186198 133186284 -26413499 - B3 SINE B2 -89 109 25 3 1601 455 314 21 21 chr3 133186308 133186448 -26413335 + RSINE1 SINE B4 13 152 -13 3 1601 612 168 0 0 chr3 133186463 133186570 -26413213 - Lx3C LINE L1 -2 6974 6868 3 1601 1503 68 16 0 chr3 133186739 133186931 -26412852 + B2_Mm2 SINE B2 1 195 0 3 1601 301 274 0 0 chr3 133187237 133187299 -26412484 + B1F SINE Alu 21 82 -67 3 1601 612 280 154 26 chr3 133187910 133188299 -26411484 - L1MCa LINE L1 -5154 1354 916 3 1601 227 281 73 0 chr3 133188333 133188415 -26411368 + RSINE1 SINE B4 41 128 -37 3 1601 369 0 0 0 chr3 133188422 133188463 -26411320 + (TG)n Simple_repeat Simple_repeat 1 41 0 3 1601 735 169 88 0 chr3 133188483 133188619 -26411164 + B1_Mus1 SINE Alu 1 148 0 3 1601 244 277 74 11 chr3 133188707 133188802 -26410981 - L1MCa LINE L1 -5682 826 726 3 1601 324 274 22 29 chr3 133188829 133188968 -26410815 - L1MCa LINE L1 -5830 678 541 3 1601 686 300 119 26 chr3 133189114 133189576 -26410207 - L1MCa LINE L1 -6002 506 2 3 1601 530 246 7 22 chr3 133189702 133189839 -26409944 - B1_Mur1 SINE Alu -13 136 2 3 1601 568 211 0 34 chr3 133189929 133190047 -26409736 + B1_Mur1 SINE Alu 35 148 -1 3 1601 1163 197 14 0 chr3 133190063 133190271 -26409512 + B3 SINE B2 1 211 -5 3 1601 1143 82 0 0 chr3 133190302 133190448 -26409335 + B1_Mus1 SINE Alu 3 148 0 3 1601 202 109 43 21 chr3 133190450 133190497 -26409286 + A-rich Low_complexity Low_complexity 2 49 0 3 1601 508 222 9 87 chr3 133190530 133190696 -26409087 - B3 SINE B2 -17 178 29 3 1601 588 156 90 38 chr3 133190739 133190872 -26408911 - B1_Mur2 SINE Alu 0 149 10 3 1601 1476 84 16 13 chr3 133191055 133191273 -26408510 - L1Md_T LINE L1 -937 5206 4966 3 1601 3543 36 2 0 chr3 133191266 133191681 -26408102 + L1Md_T LINE L1 5171 5586 -297 3 1601 8544 35 1 0 chr3 133191681 133192676 -26407107 + L1Md_T LINE L1 5587 6582 0 3 1601 1012 66 0 7 chr3 133193053 133193191 -26406592 + B1_Mm SINE Alu 11 147 0 3 1601 376 288 27 0 chr3 133193394 133193505 -26406278 + PB1D10 SINE Alu 3 116 -1 3 1601 333 0 0 0 chr3 133194069 133194106 -26405677 + (TG)n Simple_repeat Simple_repeat 2 38 0 3 1601 381 239 11 11 chr3 133194305 133194394 -26405389 - B1F SINE Alu -41 108 20 3 1601 227 237 49 62 chr3 133196143 133196224 -26403559 + B1_Mur2 SINE Alu 64 143 -6 3 1601 222 91 0 0 chr3 133196246 133196279 -26403504 + (TG)n Simple_repeat Simple_repeat 2 34 0 3 1601 1178 62 0 0 chr3 133196298 133196443 -26403340 - B1_Mus2 SINE Alu -2 145 1 3 1601 360 145 13 38 chr3 133196911 133196990 -26402793 - Lx7 LINE L1 0 7696 7620 3 1601 709 257 54 5 chr3 133197527 133197711 -26402072 + B3 SINE B2 1 193 -23 3 1601 361 70 48 0 chr3 133197759 133197818 -26401965 - B2_Mm2 SINE B2 -86 112 46 3 1601 300 190 59 10 chr3 133197880 133197981 -26401802 + (TTATA)n Simple_repeat Simple_repeat 2 107 0 3 1601 1196 116 12 0 chr3 133197981 133198153 -26401630 - B2_Mm1t SINE B2 -18 175 2 3 1601 584 214 234 11 chr3 133198196 133198371 -26401412 + B3 SINE B2 2 215 -1 3 1601 32 26 0 0 chr3 133198372 133198411 -26401372 + AT_rich Low_complexity Low_complexity 1 39 0 3 1601 325 113 19 0 chr3 133198534 133198587 -26401196 + B1_Mus1 SINE Alu 1 54 -94 3 1601 279 0 0 0 chr3 133199029 133199060 -26400723 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 3 1601 908 144 7 33 chr3 133199439 133199590 -26400193 + B1_Mus2 SINE Alu 1 147 0 3 1601 1317 81 17 0 chr3 133199600 133199772 -26400011 + B2_Mm2 SINE B2 2 176 -19 3 1601 363 23 0 0 chr3 133199776 133199820 -26399963 + (GAAA)n Simple_repeat Simple_repeat 3 46 0 3 1601 270 146 309 37 chr3 133200051 133200163 -26399620 + B1_Mur1 SINE Alu 1 146 -3 3 1601 228 289 143 10 chr3 133200543 133200641 -26399142 + PB1D10 SINE Alu 1 111 -6 3 1601 305 324 27 9 chr3 133200650 133200762 -26399021 + PB1D7 SINE Alu 5 118 -2 3 1601 333 0 0 0 chr3 133200831 133200868 -26398915 + (CA)n Simple_repeat Simple_repeat 2 38 0 3 1601 411 285 89 0 chr3 133200878 133201036 -26398747 + L1MD2 LINE L1 6185 6356 -3 3 1601 1203 122 16 16 chr3 133201047 133201231 -26398552 + B2_Mm2 SINE B2 2 185 -10 3 1601 1235 35 0 0 chr3 133201431 133201576 -26398207 + B1_Mm SINE Alu 3 147 0 3 1601 450 75 0 0 chr3 133201576 133201643 -26398140 + (A)n Simple_repeat Simple_repeat 1 67 0 3 1601 235 340 80 0 chr3 133201882 133201982 -26397801 + B1_Mur3 SINE Alu 33 140 -9 3 1601 566 185 185 58 chr3 133201987 133202176 -26397607 + B3 SINE B2 4 216 0 3 1601 878 81 280 7 chr3 133202298 133202448 -26397335 - B2_Mm2 SINE B2 -4 191 1 3 1601 297 0 0 0 chr3 133202488 133202521 -26397262 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 3 1601 706 246 0 0 chr3 133202521 133202659 -26397124 - B1_Mur4 SINE Alu -11 139 2 3 1601 499 325 19 19 chr3 133202667 133202821 -26396962 - B3A SINE B2 -44 154 1 3 1601 746 249 44 10 chr3 133203496 133203699 -26396084 + B3 SINE B2 1 210 -6 3 1601 279 0 0 0 chr3 133203802 133203833 -26395950 + (TTTG)n Simple_repeat Simple_repeat 1 31 0 3 1601 232 308 64 0 chr3 133203843 133203921 -26395862 - PB1 SINE Alu -30 97 15 3 1601 787 93 0 8 chr3 133204452 133204571 -26395212 - B1_Mm SINE Alu 0 147 30 3 1601 33 43 0 0 chr3 133205430 133205477 -26394306 + AT_rich Low_complexity Low_complexity 1 47 0 3 1601 186 71 0 0 chr3 133205837 133205865 -26393918 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 3 1601 211 194 0 0 chr3 133206491 133206527 -26393256 + GA-rich Low_complexity Low_complexity 2 37 0 3 1601 202 114 29 0 chr3 133207106 133207141 -26392642 + (GA)n Simple_repeat Simple_repeat 2 37 0 3 1601 375 41 0 0 chr3 133208617 133208666 -26391117 + (TC)n Simple_repeat Simple_repeat 1 49 0 3 1601 297 0 0 0 chr3 133208666 133208698 -26391085 + (CA)n Simple_repeat Simple_repeat 1 33 0 3 1601 249 287 42 11 chr3 133208722 133208817 -26390966 + PB1D7 SINE Alu 18 115 -5 3 1601 445 158 0 31 chr3 133208817 133208915 -26390868 + GA-rich Low_complexity Low_complexity 3 97 0 3 1601 371 198 49 59 chr3 133209198 133209275 -26390508 - B1_Mur1 SINE Alu 0 149 71 3 1601 3287 56 2 2 chr3 133209275 133209671 -26390112 - MTA_Mm LTR MaLR 0 396 1 3 1601 371 198 49 59 chr3 133209671 133209695 -26390088 - B1_Mur1 SINE Alu -79 70 49 3 1601 21 36 0 0 chr3 133209717 133209745 -26390038 + AT_rich Low_complexity Low_complexity 1 28 0 3 1601 775 190 111 26 chr3 133209745 133209934 -26389849 - B3 SINE B2 -7 209 5 3 1601 361 242 97 32 chr3 133210226 133210350 -26389433 + ID_B1 SINE B4 89 220 -4 3 1601 457 328 7 21 chr3 133210621 133210761 -26389022 + RSINE1 SINE B4 28 165 0 3 1601 1082 89 12 18 chr3 133210795 133210966 -26388817 + B2_Mm1t SINE B2 2 171 -22 3 1601 378 144 321 9 chr3 133211019 133211131 -26388652 + B2_Mm2 SINE B2 47 193 -2 3 1601 182 350 100 0 chr3 133211664 133211764 -26388019 + MIRb SINE MIR 27 136 -132 4 1601 693 229 35 52 chr3 133211969 133212181 -26387602 - B3A SINE B2 -8 208 1 4 1601 345 264 28 0 chr3 133212224 133212296 -26387487 - B1_Mur1 SINE Alu -23 126 53 4 1601 186 103 0 0 chr3 133212589 133212618 -26387165 + (T)n Simple_repeat Simple_repeat 1 29 0 4 1601 206 32 0 31 chr3 133213108 133213140 -26386643 + (TTTTG)n Simple_repeat Simple_repeat 5 35 0 4 1601 310 266 131 15 chr3 133213817 133213947 -26385836 - ID_B1 SINE B4 0 224 80 4 1601 509 44 15 0 chr3 133213948 133214016 -26385767 + (TC)n Simple_repeat Simple_repeat 2 70 0 4 1601 471 211 91 9 chr3 133214026 133214136 -26385647 - B1_Mur2 SINE Alu -26 123 5 4 1601 444 316 7 54 chr3 133214136 133214283 -26385500 - B1F2 SINE Alu -7 142 3 4 1601 244 359 39 0 chr3 133214708 133214786 -26384997 - PB1D10 SINE Alu -34 83 3 4 1601 490 287 42 7 chr3 133215418 133215562 -26384221 + B1F SINE Alu 1 149 0 4 1601 248 297 70 28 chr3 133215910 133216052 -26383731 - RSINE1 SINE B4 0 165 18 4 1601 501 203 88 16 chr3 133216305 133216430 -26383353 + B1F SINE Alu 11 144 -5 4 1601 434 303 51 36 chr3 133216432 133216569 -26383214 + B1F SINE Alu 4 143 -6 4 1601 442 274 67 27 chr3 133216572 133216722 -26383061 + RSINE1 SINE B4 5 160 -5 4 1601 258 321 60 22 chr3 133216898 133217032 -26382751 - RSINE1 SINE B4 -17 148 10 4 1601 574 299 0 0 chr3 133217055 133217199 -26382584 + RSINE1 SINE B4 3 146 -19 4 1601 234 0 0 0 chr3 133217209 133217235 -26382548 + (CA)n Simple_repeat Simple_repeat 2 27 0 4 1601 387 244 126 0 chr3 133218024 133218143 -26381640 + B1_Mur1 SINE Alu 3 136 -13 4 1601 277 254 0 0 chr3 133218173 133218228 -26381555 + PB1D9 SINE Alu 17 71 -49 4 1601 302 61 20 0 chr3 133218228 133218277 -26381506 + (TTTTTG)n Simple_repeat Simple_repeat 5 54 0 4 1601 1173 61 0 0 chr3 133218277 133218424 -26381359 - B1_Mus2 SINE Alu 0 147 1 4 1601 364 305 0 0 chr3 133218424 133218506 -26381277 + B1_Mur1 SINE Alu 61 142 -7 4 1601 454 290 127 42 chr3 133218526 133218785 -26380998 + B4A SINE B4 12 292 0 4 1601 400 313 47 24 chr3 133218948 133219118 -26380665 + B4A SINE B4 1 174 -118 4 1601 613 268 185 129 chr3 133219179 133219467 -26380316 + MTE2b LTR MaLR 1 324 -55 4 1601 574 158 36 163 chr3 133219467 133219633 -26380150 - B1_Mur4 SINE Alu -5 145 1 4 1601 499 268 185 129 chr3 133219633 133219700 -26380083 + MTE2b LTR MaLR 315 376 -3 4 1601 217 132 111 19 chr3 133220346 133220400 -26379383 + B1_Mur4 SINE Alu 2 60 -90 4 1601 273 205 62 37 chr3 133220424 133220505 -26379278 + RLTR25B LTR ERVK 427 509 -519 4 1601 776 46 0 18 chr3 133220438 133220548 -26379235 + B1_Mus2 SINE Alu 40 147 0 4 1601 207 0 0 0 chr3 133220548 133220571 -26379212 + (A)n Simple_repeat Simple_repeat 1 23 0 4 1601 517 199 219 38 chr3 133221005 133221188 -26378595 - B3 SINE B2 0 216 1 4 1601 183 307 109 48 chr3 133221589 133221736 -26378047 - MIRb SINE MIR -62 206 51 4 1601 198 0 0 0 chr3 133222153 133222175 -26377608 + (A)n Simple_repeat Simple_repeat 1 22 0 4 1601 619 235 8 46 chr3 133222890 133223153 -26376630 + RMER17C LTR ERVK 1 253 -157 4 1601 224 317 0 0 chr3 133223153 133223213 -26376570 + CT-rich Low_complexity Low_complexity 4 63 0 4 1601 860 274 108 11 chr3 133223371 133223640 -26376143 + MER21B LTR ERV1 450 744 -119 4 1601 252 0 0 0 chr3 133223665 133223693 -26376090 + (TG)n Simple_repeat Simple_repeat 2 29 0 4 1601 570 306 75 22 chr3 133223793 133224060 -26375723 + MER21-int LTR ERV1 14 294 -3897 4 1601 478 243 52 85 chr3 133224080 133224233 -26375550 - RSINE1 SINE B4 -2 163 16 4 1601 7085 44 0 0 chr3 133224256 133225095 -26374688 + L1Md_F2 LINE L1 5744 6582 0 4 1601 1008 58 0 55 chr3 133225108 133225254 -26374529 + B1_Mm SINE Alu 1 138 -9 4 1601 207 0 0 0 chr3 133225254 133225277 -26374506 + (CAAAC)n Simple_repeat Simple_repeat 2 24 0 4 1601 641 203 8 8 chr3 133225362 133225491 -26374292 - RSINE1 SINE B4 -35 130 2 4 1601 337 258 194 46 chr3 133225491 133225632 -26374151 + MER4B-int LTR ERV1 3304 3465 -3293 4 1601 1334 98 16 0 chr3 133225632 133225816 -26373967 + B2_Mm2 SINE B2 2 188 -7 4 1601 337 258 194 46 chr3 133225816 133225849 -26373934 + MER4B-int LTR ERV1 3466 3504 -3254 4 1601 728 303 52 52 chr3 133225872 133226335 -26373448 + RLTR12B LTR ERVK 17 479 -49 4 1601 306 308 19 0 chr3 133226364 133226471 -26373312 + MER4B-int LTR ERV1 3693 3801 -2957 4 1601 441 36 0 0 chr3 133226532 133226587 -26373196 + (TG)n Simple_repeat Simple_repeat 2 56 0 4 1601 1761 301 107 7 chr3 133226994 133227814 -26371969 + MER21-int LTR ERV1 2500 3401 -790 4 1601 314 232 24 89 chr3 133227861 133227984 -26371799 + MER21-int LTR ERV1 3481 3595 -596 4 1601 1399 68 21 16 chr3 133228221 133228414 -26371369 + B2_Mm2 SINE B2 1 194 -1 4 1601 233 29 29 0 chr3 133228523 133228557 -26371226 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 4 1601 1140 69 0 7 chr3 133228559 133228705 -26371078 - B1_Mm SINE Alu -2 145 1 4 1601 16600 56 1 1 chr3 133228731 133231496 -26368287 - L1Md_F2 LINE L1 -2 6580 3816 4 1601 10755 61 0 3 chr3 133231494 133233418 -26366365 + L1Md_Gf LINE L1 625 2639 -3247 4 1601 266 297 0 71 chr3 133233431 133233529 -26366254 - ORR1D2 LTR MaLR -144 226 136 4 1601 394 169 0 0 chr3 133233546 133233617 -26366166 - RSINE1 SINE B4 -93 72 2 4 1601 441 256 112 2 chr3 133233620 133233820 -26365963 + L1MA4 LINE L1 5742 5966 -1678 4 1601 778 70 0 255 chr3 133233822 133234007 -26365776 + B1_Mus1 SINE Alu 1 137 -11 4 1601 522 0 0 0 chr3 133234007 133234065 -26365718 + (CAAAC)n Simple_repeat Simple_repeat 2 59 0 4 1601 1400 65 33 0 chr3 133234271 133234455 -26365328 + B2_Mm2 SINE B2 2 191 -4 4 1601 414 266 18 0 chr3 133235385 133235494 -26364289 + PB1D10 SINE Alu 2 112 -5 4 1601 23 0 0 0 chr3 133235578 133235601 -26364182 + AT_rich Low_complexity Low_complexity 1 23 0 4 1601 208 231 0 71 chr3 133235737 133235807 -26363976 + A-rich Low_complexity Low_complexity 1 65 0 4 1601 195 42 0 0 chr3 133235823 133235847 -26363936 + (CA)n Simple_repeat Simple_repeat 1 24 0 4 1601 477 105 32 0 chr3 133236063 133236158 -26363625 + (GA)n Simple_repeat Simple_repeat 1 98 0 4 1601 233 284 65 43 chr3 133236185 133236277 -26363506 - B1F SINE Alu -55 94 1 4 1601 691 189 23 0 chr3 133236390 133236522 -26363261 + B1_Mur1 SINE Alu 2 136 -13 4 1601 635 75 0 11 chr3 133236523 133236618 -26363165 + (CCAA)n Simple_repeat Simple_repeat 2 95 0 4 1601 385 259 25 49 chr3 133236626 133236748 -26363035 - ID_B1 SINE B4 -21 203 85 4 1601 339 164 0 0 chr3 133236774 133236835 -26362948 + CT-rich Low_complexity Low_complexity 4 64 0 4 1601 233 329 25 0 chr3 133236848 133236927 -26362856 - ID4_ SINE ID -1 82 2 4 1601 257 275 0 55 chr3 133236961 133237034 -26362749 - ID4_ SINE ID -4 79 11 4 1601 438 370 107 33 chr3 133237688 133238174 -26361609 - MLT1H1 LTR MaLR -2 553 32 4 1601 595 162 5 32 chr3 133238841 133238948 -26360835 + (TCTA)n Simple_repeat Simple_repeat 4 108 0 4 1601 384 22 0 0 chr3 133238948 133238993 -26360790 + (TATG)n Simple_repeat Simple_repeat 2 46 0 4 1601 285 51 0 0 chr3 133238993 133239031 -26360752 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 4 1601 1127 65 0 0 chr3 133239031 133239169 -26360614 - B1_Mus1 SINE Alu -9 139 2 4 1601 595 156 11 20 chr3 133239169 133239294 -26360489 + (TCTA)n Simple_repeat Simple_repeat 1 123 0 4 1601 422 331 51 44 chr3 133239303 133239461 -26360322 - RSINE1 SINE B4 -2 163 5 4 1601 445 243 139 28 chr3 133239632 133239776 -26360007 + RSINE1 SINE B4 6 165 0 4 1601 212 59 0 29 chr3 133239881 133239916 -26359867 + (TTAA)n Simple_repeat Simple_repeat 1 34 0 4 1601 1085 226 0 0 chr3 133239916 133240120 -26359663 - B3 SINE B2 -12 204 1 4 1601 28 0 0 0 chr3 133240205 133240233 -26359550 + AT_rich Low_complexity Low_complexity 1 28 0 4 1601 228 24 73 0 chr3 133240483 133240524 -26359259 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 4 1601 615 130 0 0 chr3 133240667 133240767 -26359016 + (GA)n Simple_repeat Simple_repeat 2 101 0 4 1601 1086 68 0 0 chr3 133240931 133241063 -26358720 + B1_Mus1 SINE Alu 5 136 -12 4 1601 688 116 0 35 chr3 133241096 133241212 -26358571 + B1_Mur4 SINE Alu 38 149 -1 4 1601 768 210 122 11 chr3 133241362 133241550 -26358233 - B3 SINE B2 -5 211 3 4 1601 1446 64 37 0 chr3 133241734 133241921 -26357862 - B2_Mm2 SINE B2 -1 194 1 4 1601 3742 104 90 0 chr3 133243055 133243632 -26356151 + L1_Mus3 LINE L1 6010 6638 0 4 1601 587 188 0 43 chr3 133243770 133243887 -26355896 - B3 SINE B2 -103 113 2 4 1601 684 218 100 11 chr3 133243953 133244143 -26355640 - B3 SINE B2 0 216 10 4 1601 252 122 0 0 chr3 133246143 133246184 -26353599 + (T)n Simple_repeat Simple_repeat 1 41 0 4 1601 787 189 20 27 chr3 133246502 133246649 -26353134 - B1_Mur1 SINE Alu -2 147 2 4 1601 304 284 0 0 chr3 133246685 133246773 -26353010 - PB1D10 SINE Alu 0 117 30 4 1601 458 291 70 27 chr3 133246834 133246846 -26352937 - B3A SINE B2 -2 196 185 4 1601 267 54 0 0 chr3 133246846 133246883 -26352900 + (TG)n Simple_repeat Simple_repeat 1 37 0 4 1601 458 291 70 27 chr3 133246883 133247057 -26352726 - B3A SINE B2 -14 184 2 4 1601 312 211 0 0 chr3 133247280 133247351 -26352432 + (CATATA)n Simple_repeat Simple_repeat 2 72 0 4 1601 21 36 0 0 chr3 133247772 133247800 -26351983 + AT_rich Low_complexity Low_complexity 1 28 0 4 1601 359 294 51 152 chr3 133247862 133248099 -26351684 + B3 SINE B2 4 216 0 4 1601 980 214 0 35 chr3 133248372 133248575 -26351208 - B3 SINE B2 -7 209 14 4 1601 881 223 19 33 chr3 133248726 133248895 -26350888 + B3 SINE B2 1 167 -49 4 1601 324 0 0 0 chr3 133248895 133248931 -26350852 + (CA)n Simple_repeat Simple_repeat 2 37 0 5 1601 881 223 19 33 chr3 133248931 133248974 -26350809 + B3 SINE B2 168 210 -6 4 1601 1354 97 22 0 chr3 133249024 133249209 -26350574 - B2_Mm2 SINE B2 -6 189 1 5 1601 1131 75 0 7 chr3 133249229 133249377 -26350406 - B1_Mus2 SINE Alu 0 147 1 5 1601 3059 232 91 70 chr3 133249379 133250388 -26349395 - RMER1A Other Other 0 1030 1 5 1601 1569 234 120 14 chr3 133250392 133250920 -26348863 - RMER1B Other Other -618 448 1 5 1601 870 88 0 0 chr3 133251544 133251669 -26348114 + (GA)n Simple_repeat Simple_repeat 2 126 0 5 1601 1140 82 0 0 chr3 133251815 133251961 -26347822 - B1_Mus2 SINE Alu 0 147 2 5 1601 832 277 5 5 chr3 133252486 133252689 -26347094 - B3 SINE B2 -11 205 3 5 1601 278 160 0 0 chr3 133253941 133253991 -26345792 - ID_B1 SINE B4 0 224 175 5 1601 362 278 130 0 chr3 133254030 133254199 -26345584 - L1M4 LINE L1 -355 5824 5634 5 1601 232 325 0 8 chr3 133254277 133254395 -26345388 - L1M4 LINE L1 -2754 3392 3276 5 1601 387 250 154 0 chr3 133254560 133254664 -26345119 - ID_B1 SINE B4 -19 205 86 5 1601 336 48 0 0 chr3 133254671 133254713 -26345070 + (TTA)n Simple_repeat Simple_repeat 1 42 0 5 1601 1294 268 69 23 chr3 133254728 133255248 -26344535 + Lx9 LINE L1 7101 7644 0 5 1601 456 185 81 27 chr3 133255272 133255399 -26344384 - B1_Mur1 SINE Alu -5 144 17 5 1601 3264 41 8 2 chr3 133255450 133255844 -26343939 + MTA_Mm LTR MaLR 1 396 0 5 1601 461 235 42 42 chr3 133255876 133255978 -26343805 - B3A SINE B2 -56 142 41 5 1601 1430 79 16 0 chr3 133255978 133256168 -26343615 - B2_Mm1t SINE B2 0 193 1 5 1601 461 235 42 42 chr3 133256168 133256207 -26343576 - B3A SINE B2 -158 40 1 5 1601 234 0 0 0 chr3 133256255 133256281 -26343502 + (TTTTA)n Simple_repeat Simple_repeat 1 26 0 5 1601 848 246 44 0 chr3 133256578 133256781 -26343002 + B3 SINE B2 5 216 0 5 1601 270 314 0 11 chr3 133257014 133257101 -26342682 + B4A SINE B4 4 89 -203 5 1601 324 235 11 86 chr3 133257062 133257155 -26342628 - B1_Mur3 SINE Alu -62 87 2 5 1601 441 0 0 0 chr3 133257369 133257418 -26342365 + (GA)n Simple_repeat Simple_repeat 1 49 0 5 1601 650 289 16 0 chr3 133257513 133257707 -26342076 + L1M2 LINE L1 4048 4244 -1636 5 1601 979 159 22 74 chr3 133257712 133257943 -26341840 + URR1B DNA MER1_type 7 225 0 5 1601 666 199 50 9 chr3 133257946 133258139 -26341644 + L1M2 LINE L1 4240 4440 -1703 5 1601 1498 68 16 0 chr3 133258806 133258997 -26340786 + B2_Mm2 SINE B2 2 195 0 5 1601 4700 126 31 16 chr3 133259232 133259547 -26340236 + RMER6A LTR ERVK 1 331 -425 5 1601 423 0 0 0 chr3 133259547 133259594 -26340189 + (GA)n Simple_repeat Simple_repeat 1 47 0 5 1601 4700 126 31 16 chr3 133259594 133260021 -26339762 + RMER6A LTR ERVK 332 754 -2 5 1601 1077 105 0 0 chr3 133260057 133260219 -26339564 + B2_Mm1t SINE B2 32 193 0 5 1601 525 193 9 35 chr3 133260287 133260400 -26339383 - PB1D7 SINE Alu -10 110 1 5 1601 397 245 44 26 chr3 133260403 133260516 -26339267 - PB1D7 SINE Alu 0 120 3 5 1601 1305 226 23 111 chr3 133260747 133261180 -26338603 + RMER19C LTR ERVK 217 611 0 5 1601 296 246 115 31 chr3 133261649 133261779 -26338004 - B1F SINE Alu -5 144 4 5 1601 258 305 46 92 chr3 133261779 133261842 -26337941 - ID_B1 SINE B4 -3 219 36 5 1601 367 143 16 0 chr3 133261859 133261922 -26337861 - B1_Mus2 SINE Alu -7 140 77 5 1601 785 168 0 14 chr3 133261940 133262079 -26337704 - B1_Mur3 SINE Alu -1 148 12 5 1601 424 317 0 140 chr3 133262079 133262175 -26337608 - ID_B1 SINE B4 0 224 23 5 1601 278 50 25 0 chr3 133262194 133262234 -26337549 + (TTTTC)n Simple_repeat Simple_repeat 2 42 0 5 1601 416 237 21 0 chr3 133262240 133262333 -26337450 - ID_B1 SINE B4 -3 221 127 5 1601 213 94 0 0 chr3 133262356 133262388 -26337395 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 5 1601 488 236 9 26 chr3 133262392 133262505 -26337278 - PB1D10 SINE Alu 0 117 7 5 1601 1467 71 16 0 chr3 133262578 133262762 -26337021 - B2_Mm2 SINE B2 -8 187 1 5 1601 740 153 0 94 chr3 133264503 133264662 -26335121 - B1_Mur3 SINE Alu -5 144 1 5 1601 264 59 0 0 chr3 133264938 133264972 -26334811 + (CAT)n Simple_repeat Simple_repeat 2 35 0 5 1601 258 32 0 0 chr3 133265362 133265393 -26334390 + (TG)n Simple_repeat Simple_repeat 2 32 0 5 1601 790 271 60 60 chr3 133265401 133265668 -26334115 - B4 SINE B4 -23 269 3 5 1601 1869 208 30 21 chr3 133265782 133266328 -26333455 + RLTR20B3 LTR ERVK 21 560 0 5 1601 2379 153 24 7 chr3 133266414 133266823 -26332960 - MTC LTR MaLR 0 421 6 5 1601 405 271 48 20 chr3 133267616 133267763 -26332020 + RMER15 LTR ERVL 423 573 -2 5 1601 1206 71 18 0 chr3 133268074 133268242 -26331541 - B2_Mm2 SINE B2 -5 190 20 5 1601 2812 49 3 69 chr3 133268772 133269163 -26330620 - RLTR10B2 LTR ERVK 0 365 1 5 1601 477 0 0 0 chr3 133269810 133269863 -26329920 + (TC)n Simple_repeat Simple_repeat 2 54 0 5 1601 363 244 22 11 chr3 133269920 133270011 -26329772 + MLT1A1 LTR MaLR 300 391 -17 5 1601 213 154 0 0 chr3 133270201 133270240 -26329543 + (TG)n Simple_repeat Simple_repeat 2 40 0 5 1601 593 240 50 62 chr3 133270241 133270401 -26329382 - RSINE1 SINE B4 0 165 8 5 1601 275 321 8 82 chr3 133270599 133270721 -26329062 - MER63A DNA AcHobo -52 158 46 5 1601 1224 91 6 28 chr3 133271340 133271520 -26328263 - B2_Mm2 SINE B2 -17 178 3 5 1601 235 318 15 0 chr3 133271551 133271617 -26328166 - tRNA-Ala-GCY_ tRNA tRNA -4 71 5 5 1601 354 328 83 6 chr3 133272017 133272198 -26327585 - MLT2E LTR ERVL -410 218 24 5 1601 285 118 0 0 chr3 133272341 133272392 -26327391 + (TC)n Simple_repeat Simple_repeat 2 52 0 5 1601 285 183 0 0 chr3 133272966 133273026 -26326757 + (TG)n Simple_repeat Simple_repeat 2 61 0 5 1601 1901 304 58 3 chr3 133273027 133273591 -26326192 - Lx8 LINE L1 -147 7326 6732 5 1601 475 295 92 26 chr3 133273639 133273792 -26325991 - RSINE1 SINE B4 0 165 3 5 1601 480 157 46 16 chr3 133273796 133273919 -26325864 - L1_Rod LINE L1 -863 5280 5130 5 1601 2083 163 65 23 chr3 133273944 133274372 -26325411 + RMER4A LTR ERVK 19 464 -2 5 1601 4356 126 13 6 chr3 133274372 133275077 -26324706 - L1_Mur2 LINE L1 -1394 4483 3774 5 1601 991 274 9 0 chr3 133275074 133275286 -26324497 + Lx5 LINE L1 6610 6823 -227 5 1601 282 226 65 2 chr3 133275282 133275374 -26324409 - L1_Mur3 LINE L1 -2180 3966 3836 5 1601 288 38 75 0 chr3 133275415 133275468 -26324315 + (TTTA)n Simple_repeat Simple_repeat 3 59 0 5 1601 1096 106 0 0 chr3 133275468 133275610 -26324173 - B1_Mus1 SINE Alu -5 143 2 5 1601 727 273 33 5 chr3 133275841 133276051 -26323732 - B3 SINE B2 0 216 1 5 1601 956 55 0 8 chr3 133276063 133276191 -26323592 + (TTTC)n Simple_repeat Simple_repeat 2 128 0 5 1601 522 265 7 0 chr3 133276191 133276338 -26323445 - L1M4 LINE L1 -2465 3681 3534 5 1601 22 35 0 0 chr3 133276444 133276473 -26323310 + AT_rich Low_complexity Low_complexity 1 29 0 5 1601 370 298 27 34 chr3 133276474 133276620 -26323163 - ID_B1 SINE B4 0 224 80 5 1601 25 0 0 0 chr3 133276959 133276984 -26322799 + AT_rich Low_complexity Low_complexity 1 25 0 5 1601 243 0 0 0 chr3 133278092 133278119 -26321664 + (CAAAA)n Simple_repeat Simple_repeat 3 29 0 5 1601 354 350 139 10 chr3 133278510 133278718 -26321065 - MIRb SINE MIR -7 261 27 5 1601 7711 137 45 20 chr3 133278969 133280367 -26319416 + Lx3C LINE L1 5541 6974 -2 5 1601 229 301 52 31 chr3 133280415 133280511 -26319272 - B1F1 SINE Alu 0 149 52 5 1601 981 32 0 0 chr3 133280914 133281039 -26318744 - B1_Mm SINE Alu 0 147 23 5 1601 237 271 86 0 chr3 133281088 133281158 -26318625 + MIR SINE MIR 61 136 -132 5 1601 233 350 134 14 chr3 133281687 133281829 -26317954 + LTR16B1 LTR ERVL 320 478 -2 5 1601 199 320 51 10 chr3 133283922 133284020 -26315763 + MIR3 SINE MIR 96 197 -11 5 1601 225 0 0 0 chr3 133284028 133284053 -26315730 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 5 1601 1152 58 0 0 chr3 133284053 133284191 -26315592 - B1_Mus2 SINE Alu -9 138 1 5 1601 227 279 12 48 chr3 133284264 133284347 -26315436 - L1M2 LINE L1 -1196 4947 4868 5 1601 240 231 19 0 chr3 133284344 133284396 -26315387 + L1M2 LINE L1 4707 4759 -1384 5 1601 2454 183 0 5 chr3 133284926 133285349 -26314434 - MTC LTR MaLR 0 421 1 5 1601 1260 98 5 21 chr3 133285661 133285849 -26313934 - B2_Mm1a SINE B2 -8 185 1 5 1601 22 0 0 0 chr3 133286952 133286974 -26312809 + AT_rich Low_complexity Low_complexity 1 22 0 5 1601 387 244 135 45 chr3 133287854 133287987 -26311796 - B1_Mur1 SINE Alu 0 149 5 5 1601 1169 70 0 0 chr3 133288764 133288907 -26310876 + B1_Mus1 SINE Alu 1 143 -5 5 1601 180 0 0 0 chr3 133289637 133289657 -26310126 + (T)n Simple_repeat Simple_repeat 1 20 0 5 1601 1510 230 93 5 chr3 133290366 133290751 -26309032 - MTD LTR MaLR 0 419 1 5 1601 13870 49 3 4 chr3 133290986 133293410 -26306373 - L1Md_F2 LINE L1 -11 6571 4151 5 1601 551 192 30 12 chr3 133293414 133293583 -26306200 + CT-rich Low_complexity Low_complexity 6 177 0 5 1601 311 203 0 13 chr3 133293612 133293687 -26306096 + CT-rich Low_complexity Low_complexity 4 77 0 5 1601 1077 140 0 0 chr3 133293694 133293872 -26305911 + (TC)n Simple_repeat Simple_repeat 2 179 0 5 1601 198 0 0 0 chr3 133293872 133293893 -26305890 + (TTTC)n Simple_repeat Simple_repeat 3 24 0 5 1601 1106 57 0 21 chr3 133293893 133294029 -26305754 - B1_Mus1 SINE Alu -12 136 3 5 1601 476 310 140 14 chr3 133294051 133294384 -26305399 - Lx9 LINE L1 -19 7625 7150 5 1601 609 264 5 75 chr3 133294385 133294598 -26305185 + Lx9 LINE L1 7014 7211 -433 5 1601 7909 44 8 1 chr3 133294712 133295775 -26304008 + MTA_Mm-int LTR MaLR 29 1098 0 5 1601 3425 40 2 0 chr3 133295775 133296170 -26303613 + MTA_Mm LTR MaLR 1 396 0 5 1601 522 0 0 0 chr3 133296245 133296303 -26303480 + (TTTC)n Simple_repeat Simple_repeat 3 60 0 5 1601 21 57 0 0 chr3 133296314 133296349 -26303434 + AT_rich Low_complexity Low_complexity 1 35 0 6 1601 1112 87 12 0 chr3 133296414 133296575 -26303208 - L1_Mus1 LINE L1 0 6567 6405 6 1601 314 340 9 9 chr3 133297518 133297628 -26302155 - PB1D10 SINE Alu -7 110 1 6 1601 382 327 9 0 chr3 133297665 133297772 -26302011 - PB1D10 SINE Alu -1 116 9 6 1601 290 281 64 48 chr3 133297985 133298172 -26301611 - L1MEg LINE L1 -3789 2357 2168 6 1601 511 244 86 29 chr3 133298296 133298435 -26301348 - B1_Mur1 SINE Alu -1 148 2 6 1601 256 290 141 6 chr3 133298741 133298897 -26300886 - L1MEg LINE L1 -4650 1592 1416 6 200 38747 30 1 1 chr3 133298903 133305753 -26294030 - L1Md_T LINE L1 0 6585 1 6 1602 433 269 17 0 chr3 133306007 133306126 -26293657 + Lx9 LINE L1 7227 7347 -297 6 1602 212 167 0 0 chr3 133306285 133306327 -26293456 + A-rich Low_complexity Low_complexity 1 42 0 6 1602 255 176 116 14 chr3 133306376 133306445 -26293338 - L1MEg LINE L1 -4957 1285 1210 6 1602 1428 71 6 0 chr3 133306446 133306628 -26293155 + B2_Mm1t SINE B2 2 184 -9 6 1602 191 36 0 35 chr3 133306787 133306816 -26292967 + (TA)n Simple_repeat Simple_repeat 2 29 0 6 1602 369 239 21 11 chr3 133307123 133307216 -26292567 + B3 SINE B2 122 215 -1 6 1602 451 364 7 0 chr3 133307231 133307374 -26292409 + RSINE1 SINE B4 1 144 -21 6 1602 225 159 0 0 chr3 133307391 133307435 -26292348 + CT-rich Low_complexity Low_complexity 1 44 0 6 1602 414 0 0 0 chr3 133307435 133307481 -26292302 + (CA)n Simple_repeat Simple_repeat 1 46 0 6 1602 1379 66 27 16 chr3 133308206 133308391 -26291392 - B2_Mm2 SINE B2 -7 188 2 6 1602 726 176 0 0 chr3 133308533 133308658 -26291125 - B3 SINE B2 -86 130 6 6 1602 985 275 99 37 chr3 133308774 133309148 -26290635 + MTD LTR MaLR 1 397 -22 6 1602 21 36 0 0 chr3 133309222 133309250 -26290533 + AT_rich Low_complexity Low_complexity 1 28 0 6 1602 252 0 0 0 chr3 133309628 133309656 -26290127 + (T)n Simple_repeat Simple_repeat 1 28 0 6 1602 279 0 0 0 chr3 133310905 133310936 -26288847 + (TG)n Simple_repeat Simple_repeat 2 32 0 6 1602 468 0 0 0 chr3 133310936 133310988 -26288795 + (GA)n Simple_repeat Simple_repeat 2 53 0 6 1602 834 175 67 11 chr3 133311571 133311750 -26288033 + B3 SINE B2 25 213 -3 6 1602 333 192 8 15 chr3 133312330 133312462 -26287321 + (TG)n Simple_repeat Simple_repeat 2 132 0 6 1602 233 38 17 86 chr3 133313085 133313143 -26286640 + (CAAAA)n Simple_repeat Simple_repeat 2 55 0 6 1602 237 206 29 29 chr3 133313288 133313358 -26286425 + L1MEd LINE L1 1144 1213 -4906 6 1602 22 80 0 0 chr3 133314362 133314412 -26285371 + AT_rich Low_complexity Low_complexity 1 50 0 6 1602 219 184 52 52 chr3 133314436 133314551 -26285232 + (TATAA)n Simple_repeat Simple_repeat 5 119 0 6 1602 672 299 84 8 chr3 133314584 133314847 -26284936 - Lx7 LINE L1 -350 7346 7064 6 1602 2099 87 4 0 chr3 133315283 133315558 -26284225 + L1_Mus1 LINE L1 6292 6567 0 6 1602 666 95 0 0 chr3 133315585 133315680 -26284103 + (GAA)n Simple_repeat Simple_repeat 1 95 0 6 1602 410 302 24 0 chr3 133315793 133315919 -26283864 + Lx8 LINE L1 6818 6946 -527 6 1602 1991 136 46 92 chr3 133315919 133316117 -26283666 + ORR1B1 LTR MaLR 1 177 -217 6 1602 3125 56 10 5 chr3 133316117 133316515 -26283268 - MTB LTR MaLR 0 400 1 6 1602 1991 136 46 92 chr3 133316515 133316729 -26283054 + ORR1B1 LTR MaLR 178 394 0 6 1602 917 286 64 3 chr3 133316729 133316975 -26282808 + Lx8 LINE L1 6942 7201 -272 6 1602 324 0 0 0 chr3 133316975 133317011 -26282772 + (TG)n Simple_repeat Simple_repeat 2 37 0 6 1602 917 286 64 3 chr3 133317011 133317059 -26282724 + Lx8 LINE L1 7202 7253 -220 6 1602 2613 113 0 5 chr3 133317059 133317441 -26282342 + L1_Mm LINE L1 4843 5222 -661 6 1602 6603 61 10 0 chr3 133317442 133318261 -26281522 + L1_Mus1 LINE L1 5741 6567 0 6 1602 336 259 27 86 chr3 133318272 133318492 -26281291 + Lx8 LINE L1 7239 7445 -28 6 1602 663 13 0 0 chr3 133318962 133319038 -26280745 + (GA)n Simple_repeat Simple_repeat 1 76 0 6 1602 922 205 31 5 chr3 133319167 133319358 -26280425 + B3 SINE B2 9 204 -12 6 1602 658 262 28 0 chr3 133319715 133319860 -26279923 + B3A SINE B2 2 150 -48 6 1602 478 173 55 0 chr3 133320029 133320139 -26279644 + PB1D9 SINE Alu 2 117 -3 6 1602 1319 107 15 5 chr3 133320139 133320345 -26279438 + Lx2 LINE L1 6790 6997 0 6 1602 255 61 0 0 chr3 133320554 133320587 -26279196 + (TA)n Simple_repeat Simple_repeat 2 34 0 6 1602 195 204 0 0 chr3 133320742 133320786 -26278997 + CT-rich Low_complexity Low_complexity 5 48 0 6 1602 744 119 0 0 chr3 133320800 133320918 -26278865 + (TTCC)n Simple_repeat Simple_repeat 3 120 0 6 1602 491 195 107 61 chr3 133320921 133321052 -26278731 - B1_Mur1 SINE Alu -12 137 1 6 1602 987 56 21 0 chr3 133321561 133321704 -26278079 + (TCTA)n Simple_repeat Simple_repeat 4 149 0 6 1602 1096 78 0 0 chr3 133321705 133321858 -26277925 - B2_Mm2 SINE B2 -41 154 2 6 1602 801 327 73 29 chr3 133323394 133323775 -26276008 + MT2A LTR ERVL 134 531 -2 6 1602 632 296 6 6 chr3 133323814 133323977 -26275806 - B4A SINE B4 -129 163 1 6 1602 569 248 21 28 chr3 133323992 133324137 -26275646 - B1F1 SINE Alu -5 144 1 6 1602 1010 297 59 35 chr3 133324143 133324604 -26275179 - MER68 LTR ERVL -50 513 42 6 1602 270 0 0 0 chr3 133324634 133324664 -26275119 + (TG)n Simple_repeat Simple_repeat 1 30 0 6 1602 24 0 0 0 chr3 133324974 133324998 -26274785 + AT_rich Low_complexity Low_complexity 1 24 0 6 1602 440 236 0 11 chr3 133325643 133325737 -26274046 + B1F SINE Alu 7 99 -50 6 1602 1003 102 0 11 chr3 133325747 133325926 -26273857 + (GGGA)n Simple_repeat Simple_repeat 4 180 0 6 1602 438 278 60 56 chr3 133326018 133326269 -26273514 - RLTR12B LTR ERVK -47 481 230 6 1602 709 236 63 51 chr3 133326292 133326546 -26273237 - RLTR12B LTR ERVK -240 288 32 6 1602 1520 267 122 24 chr3 133326798 133327331 -26272452 - Lx8 LINE L1 -2 7471 6887 6 1602 348 83 0 0 chr3 133327422 133327470 -26272313 + (CA)n Simple_repeat Simple_repeat 1 48 0 6 1602 437 248 73 52 chr3 133327589 133327725 -26272058 - B1_Mur4 SINE Alu -6 144 6 6 1602 779 175 0 21 chr3 133329997 133330137 -26269646 - B1_Mur2 SINE Alu 0 149 13 6 1602 280 266 64 89 chr3 133330007 133330164 -26269619 - B4A SINE B4 -72 220 68 6 1602 228 305 0 35 chr3 133330246 133330331 -26269452 - MLT1A0 LTR MaLR -36 372 291 6 1602 301 281 37 52 chr3 133330548 133330683 -26269100 - MLT1A0 LTR MaLR -232 133 1 6 1602 2249 66 3 51 chr3 133331425 133331760 -26268023 - ORR1A2 LTR MaLR -8 319 1 6 1602 242 276 79 30 chr3 133331814 133331915 -26267868 + MIRb SINE MIR 56 161 -107 6 1602 2317 141 36 11 chr3 133332137 133332495 -26267288 - ORR1B2 LTR MaLR 0 367 1 6 1602 213 365 0 0 chr3 133332502 133332576 -26267207 - FLAM_A SINE Alu -220 75 2 6 1602 1175 49 0 7 chr3 133332646 133332789 -26266994 - B1_Mm SINE Alu -1 146 5 6 1602 467 289 53 66 chr3 133332808 133333034 -26266749 - Lx8 LINE L1 -1 7472 7250 6 1602 288 109 0 0 chr3 133333127 133333182 -26266601 + RMER17C LTR ERVK 338 392 -18 6 1602 1522 53 19 10 chr3 133333182 133333390 -26266393 - L1Md_F3 LINE L1 -1 6583 6374 6 1602 326 23 23 0 chr3 133333576 133333619 -26266164 + (GA)n Simple_repeat Simple_repeat 2 45 0 6 1602 767 277 90 54 chr3 133333894 133334226 -26265557 - Lx8 LINE L1 -5 7468 7125 6 1602 29 84 0 0 chr3 133335461 133335532 -26264251 + AT_rich Low_complexity Low_complexity 1 71 0 6 1602 446 281 191 19 chr3 133336223 133336433 -26263350 - LTR33B LTR ERVL -172 331 86 6 1602 726 117 0 0 chr3 133336564 133336675 -26263108 + (CA)n Simple_repeat Simple_repeat 2 112 0 6 1602 516 237 127 0 chr3 133336698 133336816 -26262967 - B1_Mur1 SINE Alu -16 133 1 6 1602 24 32 0 0 chr3 133336955 133336986 -26262797 + AT_rich Low_complexity Low_complexity 1 31 0 6 1602 5065 78 77 4 chr3 133337061 133337772 -26262011 - L1Md_F2 LINE L1 0 6582 5820 6 1602 2624 44 9 0 chr3 133337772 133338111 -26261672 + L1Md_F2 LINE L1 5244 5585 -298 6 1602 8226 38 3 1 chr3 133338112 133339095 -26260688 + L1Md_F2 LINE L1 5587 6571 -11 6 1602 430 280 37 0 chr3 133339134 133339241 -26260542 - B3A SINE B2 -86 112 2 6 1602 231 307 88 10 chr3 133339254 133339356 -26260427 - PB1D10 SINE Alu -6 111 2 6 1602 443 223 141 25 chr3 133339868 133340066 -26259717 + L1MA4 LINE L1 5709 5929 -371 6 1602 670 168 187 0 chr3 133340347 133340502 -26259281 - Lx5 LINE L1 0 7050 6867 6 1602 872 0 23 30 chr3 133340654 133340786 -26258997 + (TTCTC)n Simple_repeat Simple_repeat 5 135 0 6 1602 1026 199 14 19 chr3 133341010 133341220 -26258563 - B3 SINE B2 -6 210 2 6 1602 1641 298 33 15 chr3 133341361 133341968 -26257815 - Lx8 LINE L1 0 7473 6856 6 1602 858 299 43 3 chr3 133342358 133342660 -26257123 - Lx8 LINE L1 -556 6917 6604 6 1602 1799 223 43 70 chr3 133342660 133343528 -26256255 + Lx7 LINE L1 5262 6098 -1598 6 1602 989 258 0 48 chr3 133343600 133343869 -26255914 - Lx8 LINE L1 -956 6517 6262 6 1602 373 309 43 32 chr3 133343889 133344076 -26255707 + Lx8 LINE L1 7113 7301 -172 6 1602 238 290 20 70 chr3 133344629 133344729 -26255054 - MIRb SINE MIR -88 180 86 6 1602 429 277 102 0 chr3 133345473 133345610 -26254173 - MER5B DNA MER1_type -19 159 9 6 1602 212 0 36 0 chr3 133346736 133346764 -26253019 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 6 1602 322 224 9 67 chr3 133346764 133346861 -26252922 - PB1D10 SINE Alu -24 93 1 6 1602 183 277 72 0 chr3 133348695 133348778 -26251005 - L2 LINE L2 -521 2898 2810 6 1602 426 301 38 0 chr3 133349091 133349224 -26250559 - L1_Mur3 LINE L1 -638 5242 5105 6 1602 1404 289 58 28 chr3 133349224 133349832 -26249951 + Lx8 LINE L1 6843 7468 -5 6 1602 1774 172 8 57 chr3 133349955 133350307 -26249476 - Lx4B LINE L1 -1 7057 6723 6 1602 207 69 0 0 chr3 133350425 133350454 -26249329 + (TG)n Simple_repeat Simple_repeat 2 30 0 6 1602 423 52 0 0 chr3 133350456 133350514 -26249269 + (GA)n Simple_repeat Simple_repeat 1 58 0 7 1602 699 264 0 28 chr3 133350551 133350695 -26249088 - RSINE1 SINE B4 -22 143 4 7 1602 307 121 0 43 chr3 133350941 133351010 -26248773 + T-rich Low_complexity Low_complexity 1 66 0 7 1602 588 259 44 44 chr3 133351273 133351455 -26248328 - B3A SINE B2 -16 182 1 7 1602 5428 65 24 17 chr3 133351469 133352279 -26247504 - MusHAL1 LINE L1 -2 2710 1896 7 1602 407 19 19 0 chr3 133352352 133352404 -26247379 + (TC)n Simple_repeat Simple_repeat 1 53 0 7 1602 8300 186 43 47 chr3 133352868 133355279 -26244504 + Lx7 LINE L1 5297 7696 0 7 1602 237 108 0 0 chr3 133356353 133356390 -26243393 + (TTTTG)n Simple_repeat Simple_repeat 2 38 0 7 1602 256 246 152 33 chr3 133356869 133356957 -26242826 - PB1D7 SINE Alu -40 109 15 7 1602 224 222 0 36 chr3 133358604 133358660 -26241123 + (TATG)n Simple_repeat Simple_repeat 3 56 0 7 1602 284 318 103 120 chr3 133358662 133358682 -26241101 - B3A SINE B2 -16 182 11 7 1602 592 291 26 45 chr3 133358682 133358837 -26240946 - RSINE1 SINE B4 -2 163 12 7 1602 638 360 47 5 chr3 133358852 133359067 -26240716 - B4A SINE B4 -67 225 2 7 1602 968 239 34 0 chr3 133359198 133359407 -26240376 - B3 SINE B2 0 216 1 7 1602 1356 270 81 5 chr3 133360221 133360656 -26239127 + Lx8 LINE L1 6863 7330 -143 7 1602 309 355 9 36 chr3 133360901 133361012 -26238771 - PB1D10 SINE Alu -8 109 2 7 1602 789 247 225 42 chr3 133362363 133362857 -26236926 + L1M2 LINE L1 4689 5272 -871 7 1602 2412 218 10 26 chr3 133362856 133363459 -26236324 + L1VL4 LINE L1 176 768 -5534 7 1602 414 184 9 173 chr3 133363465 133363626 -26236157 + L1VL1 LINE L1 22 126 -6296 7 1602 354 246 57 16 chr3 133363713 133363837 -26235946 + L1_Mus4 LINE L1 675 803 -5813 7 1602 28001 115 21 11 chr3 133363845 133369716 -26230067 + L1_Mus4 LINE L1 725 6630 -6 7 1602 239 269 64 0 chr3 133369730 133369808 -26229975 + RSINE1 SINE B4 54 136 -29 7 1602 233 287 19 19 chr3 133370013 133370116 -26229667 + (TA)n Simple_repeat Simple_repeat 2 104 0 7 1602 22 56 0 0 chr3 133370224 133370260 -26229523 + AT_rich Low_complexity Low_complexity 1 36 0 7 1602 219 233 215 37 chr3 133370369 133370476 -26229307 - MIRb SINE MIR -68 200 75 7 1602 278 318 23 0 chr3 133370676 133370764 -26229019 + (CATATA)n Simple_repeat Simple_repeat 3 92 0 7 1602 340 104 0 0 chr3 133370765 133370813 -26228970 + HAL1-3A_ME LINE L1 1976 2023 -835 7 1602 1624 130 0 0 chr3 133372112 133372359 -26227424 + Lx3A LINE L1 6511 6757 -224 7 1602 1512 242 89 14 chr3 133372359 133372728 -26227055 - MTD LTR MaLR -22 397 1 7 1602 256 305 84 50 chr3 133373130 133373510 -26226273 + L1M2 LINE L1 3243 3635 -2508 7 1602 266 208 0 36 chr3 133373514 133373569 -26226214 - B1_Mur4 SINE Alu -93 57 5 7 1602 1214 225 101 29 chr3 133373718 133374034 -26225749 - RMER15 LTR ERVL 0 575 237 7 1602 501 327 60 38 chr3 133374211 133374513 -26225270 - RMER20B LTR ERVK -208 419 100 7 1602 428 237 61 20 chr3 133374623 133374722 -26225061 - RMER15 LTR ERVL -446 129 27 7 1602 219 191 0 21 chr3 133374878 133374927 -26224856 + GA-rich Low_complexity Low_complexity 1 47 0 7 1602 483 18 0 0 chr3 133374927 133374983 -26224800 + (GA)n Simple_repeat Simple_repeat 1 56 0 7 1602 205 291 0 60 chr3 133374983 133375050 -26224733 + polypurine Low_complexity Low_complexity 51 112 0 7 1602 480 271 150 75 chr3 133375412 133375648 -26224135 + MLT1A0 LTR MaLR 110 408 0 7 1602 444 313 0 0 chr3 133376906 133377005 -26222778 - PB1D7 SINE Alu -21 99 1 7 1602 341 256 77 11 chr3 133377283 133377374 -26222409 + MTD LTR MaLR 1 97 -322 7 1602 980 203 35 0 chr3 133377396 133377593 -26222190 - B3 SINE B2 -8 208 5 7 1602 690 213 67 28 chr3 133377593 133377772 -26222011 + MTD LTR MaLR 234 419 0 7 1602 181 375 85 19 chr3 133378552 133378658 -26221125 + MIRm SINE MIR 159 271 -5 7 1602 240 164 121 0 chr3 133378709 133378775 -26221008 + B1F2 SINE Alu 1 86 -63 7 1602 13147 81 21 12 chr3 133379348 133379729 -26220054 - L1VL2 LINE L1 -632 2983 2567 7 1602 804 115 0 0 chr3 133379729 133379851 -26219932 + (TTTC)n Simple_repeat Simple_repeat 3 124 0 7 1602 13147 86 17 18 chr3 133379851 133382269 -26217514 - L1VL2 LINE L1 -1049 2566 186 7 1602 38 0 0 0 chr3 133382272 133382310 -26217473 + AT_rich Low_complexity Low_complexity 1 38 0 7 1602 1004 227 40 0 chr3 133382389 133382587 -26217196 + B3 SINE B2 2 207 -9 7 1602 1837 307 109 19 chr3 133382974 133383859 -26215924 - Lx8 LINE L1 -182 7291 6328 7 1602 414 300 74 8 chr3 133383997 133384118 -26215665 - B1F SINE Alu -3 146 18 7 1602 397 356 39 32 chr3 133383999 133384153 -26215630 - ID_B1 SINE B4 -5 219 65 7 1602 2184 224 43 18 chr3 133384315 133384869 -26214914 - RMER1C Other Other -31 1311 744 7 1602 248 274 118 50 chr3 133384870 133384908 -26214875 - ID_B1 SINE B4 -16 208 82 7 1602 369 272 25 0 chr3 133384908 133384989 -26214794 - B1_Mur3 SINE Alu -66 83 1 7 1602 227 350 115 34 chr3 133385229 133385377 -26214406 - MLT2F LTR ERVL -131 532 373 7 1602 267 286 57 67 chr3 133385674 133385779 -26214004 - MIRc SINE MIR -149 119 14 7 1602 274 355 81 0 chr3 133386223 133386347 -26213436 - MLT1A0 LTR MaLR -8 400 267 7 1602 304 318 63 77 chr3 133386495 133386638 -26213145 - MLT1A0 LTR MaLR -215 150 10 7 1602 342 0 0 0 chr3 133387859 133387897 -26211886 + (CA)n Simple_repeat Simple_repeat 1 38 0 7 1602 276 189 0 0 chr3 133387897 133387950 -26211833 - Lx9 LINE L1 -167 7477 7425 7 1602 399 168 137 0 chr3 133387958 133388053 -26211730 + Lx9 LINE L1 7519 7626 -18 7 1602 184 202 12 23 chr3 133388551 133388637 -26211146 + A-rich Low_complexity Low_complexity 1 85 0 7 1602 845 276 10 0 chr3 133388890 133389093 -26210690 - B3 SINE B2 -10 206 2 7 1602 562 282 64 5 chr3 133389936 133390139 -26209644 + B3 SINE B2 2 216 0 7 1602 38 22 0 0 chr3 133391030 133391075 -26208708 + AT_rich Low_complexity Low_complexity 1 45 0 7 1602 1927 213 42 50 chr3 133391113 133391691 -26208092 - Lx9 LINE L1 0 7644 7072 7 1602 3222 39 0 0 chr3 133392154 133392540 -26207243 + L1Md_T LINE L1 6196 6581 -1 7 1602 21 0 0 0 chr3 133393324 133393345 -26206438 + AT_rich Low_complexity Low_complexity 1 21 0 7 1602 619 146 33 27 chr3 133393642 133393983 -26205800 + (TG)n Simple_repeat Simple_repeat 1 343 0 7 1602 952 81 28 17 chr3 133394015 133394192 -26205591 + (TG)n Simple_repeat Simple_repeat 2 180 0 7 1602 270 0 0 0 chr3 133394570 133394600 -26205183 + (TTA)n Simple_repeat Simple_repeat 1 30 0 7 1602 713 288 35 15 chr3 133394689 133394890 -26204893 - B3 SINE B2 -11 205 1 7 1602 297 229 29 0 chr3 133394993 133395063 -26204720 + ID2 SINE ID 1 72 -11 7 1602 1067 86 0 0 chr3 133395158 133395298 -26204485 - B1_Mus1 SINE Alu -7 141 2 7 1602 1100 293 28 19 chr3 133395372 133395835 -26203948 - L1M2 LINE L1 -1697 4885 4419 7 1602 587 231 69 80 chr3 133395864 133396052 -26203731 - B3 SINE B2 -30 186 1 7 1602 443 287 170 21 chr3 133396071 133396698 -26203085 - L1M2 LINE L1 -2408 4440 3698 7 1602 634 295 104 58 chr3 133396763 133397673 -26202110 - L1M2 LINE L1 -3205 3344 2310 7 1602 265 316 24 37 chr3 133397693 133397857 -26201926 - L1M2 LINE L1 -4605 2244 2083 7 1602 23 0 0 0 chr3 133397998 133398021 -26201762 + AT_rich Low_complexity Low_complexity 1 23 0 7 1602 972 143 27 44 chr3 133399141 133399324 -26200459 - Lx5 LINE L1 -218 6832 6653 7 1602 354 45 0 0 chr3 133399837 133399881 -26199902 + (TG)n Simple_repeat Simple_repeat 2 45 0 7 1602 36 23 0 0 chr3 133400466 133400509 -26199274 + AT_rich Low_complexity Low_complexity 1 43 0 7 1602 378 0 0 0 chr3 133401303 133401345 -26198438 + (CA)n Simple_repeat Simple_repeat 2 43 0 7 1602 287 372 31 62 chr3 133401361 133401556 -26198227 + MLT1A0 LTR MaLR 10 198 -167 7 1602 241 49 24 0 chr3 133401583 133401624 -26198159 + Lx2A LINE L1 6961 7002 -6 7 1602 1907 204 5 13 chr3 133402576 133402963 -26196820 + ORR1C2 LTR MaLR 1 384 0 7 1602 381 200 39 135 chr3 133403126 133403230 -26196553 - PB1D9 SINE Alu 0 120 27 7 1602 292 331 24 16 chr3 133403232 133403355 -26196428 + MIRb SINE MIR 88 211 -57 7 1602 180 0 0 0 chr3 133403483 133403503 -26196280 + (TTTTG)n Simple_repeat Simple_repeat 3 22 0 7 1602 645 212 62 0 chr3 133404997 133405190 -26194593 + Lx9 LINE L1 7313 7517 -127 7 1602 297 0 0 0 chr3 133405200 133405233 -26194550 + (TG)n Simple_repeat Simple_repeat 2 34 0 7 1602 567 220 11 6 chr3 133405734 133405908 -26193875 + CT-rich Low_complexity Low_complexity 1 175 0 7 1602 1214 111 11 11 chr3 133406268 133406451 -26193332 + B2_Mm1t SINE B2 2 184 -9 7 1602 881 258 9 5 chr3 133406508 133406718 -26193065 + B3 SINE B2 2 212 -4 7 1602 513 302 62 45 chr3 133407247 133407359 -26192424 + B4A SINE B4 102 222 -70 7 1602 186 43 0 0 chr3 133407359 133407382 -26192401 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 7 1602 513 302 62 45 chr3 133407382 133407446 -26192337 + B4A SINE B4 223 280 -12 7 1602 405 0 0 0 chr3 133407505 133407550 -26192233 + (TC)n Simple_repeat Simple_repeat 2 46 0 7 1602 492 32 0 0 chr3 133407550 133407612 -26192171 + (CA)n Simple_repeat Simple_repeat 1 62 0 7 1602 527 258 81 0 chr3 133409018 133409142 -26190641 - ID_B1 SINE B4 0 224 91 7 1602 1245 209 0 0 chr3 133409183 133409394 -26190389 + B3 SINE B2 5 215 -1 7 1602 423 272 50 41 chr3 133409739 133409756 -26190027 + B1_Mur1 SINE Alu 1 66 -81 7 1602 560 259 0 8 chr3 133409756 133409873 -26189910 + ID_B1 SINE B4 96 211 -13 7 1602 423 272 50 41 chr3 133409873 133409891 -26189892 + B1_Mur1 SINE Alu 67 147 0 7 1602 392 224 13 0 chr3 133410138 133410214 -26189569 - ID4 SINE ID -5 78 2 7 1602 697 243 72 46 chr3 133410391 133410585 -26189198 + B3 SINE B2 7 205 -11 7 1602 5297 34 0 0 chr3 133410590 133411211 -26188572 + L1Md_T LINE L1 5961 6581 -1 7 1602 21 36 0 0 chr3 133411299 133411327 -26188456 + AT_rich Low_complexity Low_complexity 1 28 0 7 1602 516 310 103 17 chr3 133412473 133412647 -26187136 - MLT1I LTR MaLR -189 222 34 7 1602 399 21 0 0 chr3 133412688 133412736 -26187047 + (TG)n Simple_repeat Simple_repeat 2 49 0 7 1602 252 333 12 58 chr3 133413561 133413647 -26186136 + ID4 SINE ID 1 82 -1 8 1602 570 98 0 0 chr3 133413930 133414012 -26185771 + (GAAA)n Simple_repeat Simple_repeat 2 83 0 8 1602 183 300 33 130 chr3 133415168 133415260 -26184523 + L2c LINE L2 3284 3366 -21 8 1602 181 333 11 44 chr3 133415262 133415353 -26184430 + L2a LINE L2 2769 2856 -563 8 1602 220 331 88 88 chr3 133415395 133415862 -26183921 + L2a LINE L2 2960 3426 0 8 1602 387 0 0 0 chr3 133416739 133416782 -26183001 + (TG)n Simple_repeat Simple_repeat 1 43 0 8 1602 249 33 0 0 chr3 133416790 133416820 -26182963 + (CA)n Simple_repeat Simple_repeat 1 30 0 8 1602 372 128 0 0 chr3 133418397 133418475 -26181308 + (A)n Simple_repeat Simple_repeat 1 78 0 8 1602 257 296 24 12 chr3 133418874 133418956 -26180827 - MER58B DNA MER1_type 0 341 259 8 1602 240 35 0 0 chr3 133419671 133419700 -26180083 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 8 1602 360 0 0 0 chr3 133420081 133420121 -26179662 + (TTCA)n Simple_repeat Simple_repeat 1 40 0 8 1602 1066 139 282 19 chr3 133421689 133421951 -26177832 + RMER1C Other Other 881 1211 -131 8 1602 267 173 0 0 chr3 133421953 133422005 -26177778 + CT-rich Low_complexity Low_complexity 1 52 0 8 1602 443 304 132 14 chr3 133422180 133422400 -26177383 + FordPrefect DNA Tip100 1438 1683 0 8 1602 477 0 0 0 chr3 133423140 133423193 -26176590 + (TG)n Simple_repeat Simple_repeat 1 53 0 8 1602 23 33 0 0 chr3 133423826 133423856 -26175927 + AT_rich Low_complexity Low_complexity 1 30 0 8 1602 3738 149 37 5 chr3 133423949 133424575 -26175208 - Lx4A LINE L1 -41 7017 6372 8 1602 228 333 62 69 chr3 133425046 133425191 -26174592 + L2 LINE L2 2720 2863 -556 8 1602 245 323 24 16 chr3 133425248 133425374 -26174409 + L1MD3 LINE L1 7296 7422 -573 8 1602 881 298 84 5 chr3 133425438 133425806 -26173977 - Lx8 LINE L1 -493 6980 6584 8 1602 1211 54 0 0 chr3 133425821 133425968 -26173815 - B1_Mus2 SINE Alu 0 147 1 8 1602 1173 48 0 7 chr3 133426079 133426227 -26173556 - B1_Mus2 SINE Alu 0 147 1 8 1602 252 0 0 0 chr3 133427721 133427749 -26172034 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 8 1602 213 164 345 0 chr3 133429375 133429430 -26170353 - B1F SINE Alu -8 141 68 8 1602 272 305 24 0 chr3 133429863 133429945 -26169838 + U6 snRNA snRNA 1 84 -23 8 200 359 294 64 31 chr3 133431172 133431587 -26168196 + L1M2 LINE L1 2472 2904 -3945 8 1603 646 294 50 18 chr3 133431604 133431826 -26167957 - B4A SINE B4 -62 230 2 8 1603 316 319 11 0 chr3 133431833 133431927 -26167856 + L2 LINE L2 785 879 -2540 8 1603 25 0 0 0 chr3 133432571 133432596 -26167187 + AT_rich Low_complexity Low_complexity 1 25 0 8 1603 801 296 80 45 chr3 133432712 133433448 -26166335 + L1M2 LINE L1 3049 3810 -3035 8 1603 269 358 25 0 chr3 133434396 133434477 -26165306 + ID4 SINE ID 1 83 0 8 1603 5999 85 1 17 chr3 133435197 133436022 -26163761 - L1Md_F2 LINE L1 -1 6581 5770 8 1603 411 36 0 0 chr3 133436022 133436077 -26163706 + L1Md_F2 LINE L1 5735 5789 -793 8 1603 395 201 21 7 chr3 133437800 133437940 -26161843 + (TA)n Simple_repeat Simple_repeat 2 143 0 8 1603 237 266 48 8 chr3 133438072 133438197 -26161586 - L1ME1 LINE L1 -209 5970 5841 8 1603 923 154 6 0 chr3 133438227 133438396 -26161387 + (TA)n Simple_repeat Simple_repeat 1 170 0 8 1603 411 308 85 63 chr3 133438410 133438823 -26160960 - L1ME1 LINE L1 -407 5772 5351 8 1603 330 26 0 0 chr3 133438849 133438888 -26160895 + (CA)n Simple_repeat Simple_repeat 1 39 0 8 1603 297 0 0 0 chr3 133439049 133439082 -26160701 + (C)n Simple_repeat Simple_repeat 1 33 0 8 1603 234 0 0 0 chr3 133439942 133439968 -26159815 + (TG)n Simple_repeat Simple_repeat 2 27 0 8 1603 1275 297 30 9 chr3 133440022 133440355 -26159428 - MT2A LTR ERVL -100 433 94 8 1603 1381 164 20 81 chr3 133440356 133440686 -26159097 + Lx7 LINE L1 7372 7682 -14 8 1603 180 0 0 0 chr3 133440686 133440706 -26159077 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 8 1603 1381 164 20 81 chr3 133440706 133440721 -26159062 + Lx7 LINE L1 7683 7696 0 8 1603 290 231 128 0 chr3 133440769 133440847 -26158936 - MT2A LTR ERVL -445 88 1 8 1603 837 265 76 22 chr3 133440847 133441069 -26158714 - B4 SINE B4 -56 236 3 8 1603 200 163 23 0 chr3 133441736 133441779 -26158004 + (TA)n Simple_repeat Simple_repeat 2 45 0 8 1603 25 65 0 0 chr3 133441804 133441850 -26157933 + AT_rich Low_complexity Low_complexity 1 46 0 8 1603 1817 155 80 17 chr3 133442408 133442757 -26157026 + ORR1C2 LTR MaLR 1 371 -13 8 1603 563 270 32 0 chr3 133442873 133442999 -26156784 + B3A SINE B2 2 131 -67 8 1603 376 272 15 113 chr3 133443000 133443227 -26156556 + L1VL1 LINE L1 207 391 -6027 8 1603 2684 66 0 0 chr3 133443240 133443572 -26156211 - IAPEY3_LTR LTR ERVK 0 332 1 8 1603 412 255 48 7 chr3 133443673 133443819 -26155964 + L1VL4 LINE L1 664 815 -5801 8 1603 5102 109 6 5 chr3 133443837 133445078 -26154705 + L1VL4 LINE L1 757 2000 -3883 8 1603 529 324 122 43 chr3 133445358 133445752 -26154031 - MLT1D LTR MaLR 0 505 81 8 1603 21 0 0 0 chr3 133445879 133445900 -26153883 + AT_rich Low_complexity Low_complexity 1 21 0 8 1603 217 395 54 0 chr3 133446662 133446791 -26152992 + L2b LINE L2 3230 3365 -10 8 1603 8533 128 10 13 chr3 133447905 133449496 -26150287 + Lx2 LINE L1 5067 6673 -324 8 1603 991 95 0 7 chr3 133449496 133449634 -26150149 + B1_Mm SINE Alu 1 137 -10 8 1603 396 0 0 0 chr3 133449634 133449678 -26150105 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 8 1603 8533 122 15 18 chr3 133449678 133450018 -26149765 + Lx2 LINE L1 6674 6995 -2 8 1603 3432 66 2 2 chr3 133450064 133450504 -26149279 - L1_Mus2 LINE L1 0 6566 6127 8 1603 1984 73 0 4 chr3 133450504 133450779 -26149004 + L1_Mus2 LINE L1 5867 6140 -426 8 1603 468 0 0 0 chr3 133451659 133451711 -26148072 + (TA)n Simple_repeat Simple_repeat 2 53 0 8 1603 281 135 96 0 chr3 133451712 133451764 -26148019 + Lx4A LINE L1 6355 6411 -647 8 1603 1812 190 49 5 chr3 133451764 133452134 -26147649 + Lx4A LINE L1 6672 7057 -1 8 1603 423 98 0 0 chr3 133452556 133452617 -26147166 + (TCC)n Simple_repeat Simple_repeat 3 63 0 8 1603 420 20 0 0 chr3 133452615 133452664 -26147119 + (CTA)n Simple_repeat Simple_repeat 3 51 0 8 1603 870 10 0 0 chr3 133454630 133454729 -26145054 + (TC)n Simple_repeat Simple_repeat 2 100 0 8 1603 2659 118 14 5 chr3 133454815 133455231 -26144552 - L1_Mus3 LINE L1 -7 6631 6212 8 1603 3055 106 5 7 chr3 133455231 133455667 -26144116 + RLTR9B LTR ERVK 3 437 0 8 1603 332 287 49 72 chr3 133455669 133455932 -26143851 + ETnERV2-int LTR ERVK 4 260 -3054 8 1603 36 23 0 0 chr3 133455977 133456020 -26143763 + AT_rich Low_complexity Low_complexity 1 43 0 8 1603 9340 150 48 46 chr3 133456054 133457874 -26141909 + ETnERV2-int LTR ERVK 1066 2897 -4509 8 1603 1557 76 32 44 chr3 133457874 133458123 -26141660 - L1_Mus2 LINE L1 0 6566 6321 8 1603 9340 150 48 46 chr3 133458123 133458311 -26141472 + ETnERV2-int LTR ERVK 2898 3078 -4328 8 1603 478 118 26 0 chr3 133458347 133458423 -26141360 + L1Md_F2 LINE L1 380 457 -6159 8 1603 11487 82 2 1 chr3 133458422 133460085 -26139698 + L1Md_F2 LINE L1 2773 4436 -1447 8 1603 30132 82 5 11 chr3 133460086 133465566 -26134217 + L1Md_T LINE L1 135 5585 -298 8 1603 8100 48 1 1 chr3 133465567 133466563 -26133220 + L1Md_T LINE L1 5587 6582 0 8 1603 6081 58 23 0 chr3 133466558 133467339 -26132444 + L1Md_F2 LINE L1 5783 6581 -1 8 1603 7965 77 12 9 chr3 133467339 133467398 -26132385 + L1Md_F2 LINE L1 4432 4490 -1393 8 1603 1687 78 197 91 chr3 133467398 133467707 -26132076 + ORR1A1 LTR MaLR 1 342 -4 8 1603 7965 77 12 9 chr3 133467707 133468456 -26131327 + L1Md_F2 LINE L1 4491 5234 -649 8 1603 336 24 0 0 chr3 133468456 133468497 -26131286 + (TA)n Simple_repeat Simple_repeat 1 41 0 8 1603 7965 77 12 9 chr3 133468497 133468839 -26130944 + L1Md_F2 LINE L1 5235 5585 -298 8 1603 7128 82 23 1 chr3 133468840 133469812 -26129971 + L1Md_F2 LINE L1 5588 6580 -2 8 1603 6340 214 79 78 chr3 133469813 133470473 -26129310 + RMER16-int LTR ERVK 2045 2749 -2657 8 1603 378 0 0 0 chr3 133470473 133470515 -26129268 + (TA)n Simple_repeat Simple_repeat 2 43 0 8 1603 6340 214 79 78 chr3 133470515 133470712 -26129071 + RMER16-int LTR ERVK 2750 2873 -2533 8 1603 441 0 0 0 chr3 133470712 133470761 -26129022 + (TA)n Simple_repeat Simple_repeat 2 50 0 8 1603 6340 222 66 69 chr3 133470761 133472423 -26127360 + RMER16-int LTR ERVK 2696 4175 -1231 8 1603 306 132 0 36 chr3 133472635 133472690 -26127093 + RMER16-int LTR ERVK 7331 7383 -23 8 1603 3083 102 7 7 chr3 133472710 133473145 -26126638 + RLTR9B LTR ERVK 1 435 -2 8 1603 2198 115 16 16 chr3 133473153 133473524 -26126259 - L1_Mus3 LINE L1 -440 6198 5828 8 1603 2515 98 2 18 chr3 133473526 133473833 -26125950 - L1_Mus3 LINE L1 -330 5553 5250 8 1603 308 35 16 49 chr3 133473833 133473894 -26125889 + (TTTG)n Simple_repeat Simple_repeat 2 60 0 8 1603 1171 49 0 0 chr3 133473894 133474032 -26125751 - B1_Mm SINE Alu -4 143 6 8 1603 2515 98 2 18 chr3 133474032 133474122 -26125661 - L1_Mus3 LINE L1 -634 5249 5166 8 1603 4589 139 19 29 chr3 133474115 133475733 -26124050 - L1VL1 LINE L1 -1897 1801 205 8 1603 530 43 0 0 chr3 133475732 133475801 -26123982 - L1Md_F2 LINE L1 -420 6162 6094 8 1603 2600 75 3 6 chr3 133475801 133476162 -26123621 + L1Md_F2 LINE L1 6223 6582 0 8 1603 1056 98 21 0 chr3 133476494 133476637 -26123146 + B1_Mus2 SINE Alu 2 147 0 8 1603 204 67 0 0 chr3 133476640 133476670 -26123113 + (CAAAA)n Simple_repeat Simple_repeat 4 33 0 8 1603 1792 186 9 9 chr3 133476723 133477071 -26122712 + Lx2 LINE L1 6649 6996 -1 8 1603 194 0 39 0 chr3 133477472 133477498 -26122285 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 8 1603 1016 113 0 0 chr3 133477504 133477645 -26122138 - B1_Mus1 SINE Alu -6 142 2 8 1603 2335 172 35 7 chr3 133477890 133478341 -26121442 + Lx4A LINE L1 6355 6818 -240 8 1603 2282 197 38 4 chr3 133478341 133478814 -26120969 + Lx4A LINE L1 6569 7057 -1 8 1603 315 0 0 0 chr3 133479243 133479278 -26120505 + (TTC)n Simple_repeat Simple_repeat 2 36 0 8 1603 414 0 0 0 chr3 133479278 133479324 -26120459 + (CTA)n Simple_repeat Simple_repeat 3 48 0 8 1603 229 306 0 0 chr3 133479440 133479489 -26120294 + PB1D10 SINE Alu 22 70 -47 8 1603 38 39 0 0 chr3 133479733 133479785 -26119998 + AT_rich Low_complexity Low_complexity 1 52 0 8 1603 276 30 0 0 chr3 133480505 133480538 -26119245 + (TG)n Simple_repeat Simple_repeat 1 33 0 8 1603 30 59 0 0 chr3 133481167 133481218 -26118565 + AT_rich Low_complexity Low_complexity 1 51 0 8 1603 268 280 37 74 chr3 133482652 133482760 -26117023 - MLT1E2 LTR MaLR -443 184 81 8 1603 283 186 35 0 chr3 133482872 133482958 -26116825 + CT-rich Low_complexity Low_complexity 4 92 0 8 1603 6545 114 5 4 chr3 133482990 133484315 -26115468 - L1_Mus3 LINE L1 0 6638 5309 8 1603 27257 115 9 5 chr3 133484331 133487551 -26112232 - L1_Mus2 LINE L1 -141 6425 3179 8 1603 318 26 0 0 chr3 133487551 133487590 -26112193 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 8 1603 27257 133 9 20 chr3 133487590 133490409 -26109374 - L1_Mus2 LINE L1 -2705 3178 409 8 1603 602 39 0 0 chr3 133490449 133490527 -26109256 - L1Md_F2 LINE L1 -411 6171 6094 8 1603 2705 61 3 11 chr3 133490527 133490890 -26108893 + L1Md_F2 LINE L1 6223 6582 0 8 1603 1003 105 0 0 chr3 133491222 133491355 -26108428 + B1_Mus2 SINE Alu 2 134 -13 8 1603 456 35 0 0 chr3 133491355 133491413 -26108370 + (CAAAA)n Simple_repeat Simple_repeat 1 58 0 8 1603 192 40 0 0 chr3 133491413 133491438 -26108345 + (CAAA)n Simple_repeat Simple_repeat 1 25 0 8 1603 1800 187 11 0 chr3 133491467 133491814 -26107969 + Lx2 LINE L1 6646 6996 -1 8 1603 270 0 0 0 chr3 133492222 133492252 -26107531 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 8 1603 1069 92 0 0 chr3 133492256 133492397 -26107386 - B1_Mus1 SINE Alu -6 142 2 9 1603 2233 180 42 7 chr3 133492642 133493090 -26106693 + Lx4A LINE L1 6355 6818 -240 9 1603 2313 193 38 4 chr3 133493090 133493563 -26106220 + Lx4A LINE L1 6569 7057 -1 9 1603 555 16 0 0 chr3 133493992 133494056 -26105727 + (TTC)n Simple_repeat Simple_repeat 3 66 0 9 1603 261 0 0 0 chr3 133494056 133494085 -26105698 + (CTA)n Simple_repeat Simple_repeat 3 31 0 9 1603 229 308 0 0 chr3 133494189 133494250 -26105533 + PB1D10 SINE Alu 10 70 -47 9 1603 38 39 0 0 chr3 133494484 133494536 -26105247 + AT_rich Low_complexity Low_complexity 1 52 0 9 1603 315 0 0 0 chr3 133495259 133495294 -26104489 + (TG)n Simple_repeat Simple_repeat 1 35 0 9 1603 36 40 0 0 chr3 133495913 133495963 -26103820 + AT_rich Low_complexity Low_complexity 1 50 0 9 1603 215 224 34 17 chr3 133497039 133497098 -26102685 + CT-rich Low_complexity Low_complexity 3 62 0 9 1603 333 327 99 45 chr3 133497497 133497718 -26102065 - RLTR21 LTR ERVK 0 1572 1340 9 1603 182 33 0 62 chr3 133497718 133497750 -26102033 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 9 1603 912 18 9 0 chr3 133497753 133497865 -26101918 - B1_Mm SINE Alu 0 147 35 9 1603 618 0 37 0 chr3 133497871 133497953 -26101830 + (TCTA)n Simple_repeat Simple_repeat 2 86 0 9 1603 5745 86 7 36 chr3 133497953 133498793 -26100990 - Lx3A LINE L1 -13 6968 6153 9 1603 668 12 0 0 chr3 133499918 133500000 -26099783 + L1_Mm LINE L1 3620 3701 -2182 9 1603 15617 16 1 0 chr3 133500000 133501884 -26097899 + L1Md_T LINE L1 3702 5586 -297 1 1603 8025 40 27 0 chr3 133501884 133502854 -26096929 + L1Md_T LINE L1 5587 6582 0 1 1603 563 233 103 10 chr3 133503072 133503276 -26096507 - Lx LINE L1 -3 6997 6775 2 1603 2423 224 88 5 chr3 133503280 133504054 -26095729 - Lx4B LINE L1 -34 7024 6019 3 1603 27 62 0 0 chr3 133504913 133504961 -26094822 + AT_rich Low_complexity Low_complexity 1 48 0 4 1603 20637 161 19 12 chr3 133505305 133508054 -26091729 - Lx LINE L1 -7 6647 3833 2 1603 252 86 0 0 chr3 133508054 133508089 -26091694 + (TA)n Simple_repeat Simple_repeat 1 35 0 5 1603 20637 161 15 16 chr3 133508089 133510131 -26089652 - Lx LINE L1 -2051 3832 1829 2 1603 6661 38 0 2 chr3 133510129 133510955 -26088828 - L1Md_F2 LINE L1 -110 6472 5649 6 1603 3723 82 0 16 chr3 133510947 133511527 -26088256 - MusHAL1 LINE L1 -2075 637 67 7 1603 3197 73 6 0 chr3 133511521 133512002 -26087781 - MusHAL1 LINE L1 -2196 1157 674 8 1603 2437 129 41 0 chr3 133512007 133512395 -26087388 - MusHAL1 LINE L1 -2945 409 6 8 1603 715 279 17 6 chr3 133512618 133512791 -26086992 - B3 SINE B2 -41 175 1 9 1603 383 243 0 51 chr3 133512961 133513039 -26086744 + ID4 SINE ID 5 78 -5 1 1603 416 292 49 35 chr3 133513289 133513431 -26086352 - B1_Mur1 SINE Alu -5 144 1 1 1603 550 292 22 27 chr3 133513431 133513445 -26086338 - ID_B1 SINE B4 -63 179 69 1 1603 1095 245 0 0 chr3 133513769 133513977 -26085806 - B3 SINE B2 -7 209 2 1 1603 512 293 81 0 chr3 133514010 133514133 -26085650 + ID_B1 SINE B4 84 216 -8 1 1603 827 153 6 58 chr3 133514479 133514652 -26085131 + Lx2 LINE L1 6834 6997 0 1 1603 8474 86 30 3 chr3 133515142 133517088 -26082695 - L1_Mus1 LINE L1 -4 6632 4601 1 1603 35973 45 1 3 chr3 133517105 133523439 -26076344 - L1Md_T LINE L1 0 6585 162 1 1603 20130 94 38 3 chr3 133523440 133527274 -26072509 - L1_Mus1 LINE L1 -1269 4614 639 1 1603 444 147 0 0 chr3 133527272 133527347 -26072436 - L1_Mus1 LINE L1 -6325 313 239 1 1603 2094 176 2 12 chr3 133527352 133527766 -26072017 - Lx LINE L1 -23 6631 6222 1 1603 6056 103 5 25 chr3 133527764 133528711 -26071072 + Lx LINE L1 5725 6652 -2 1 1603 1313 122 5 0 chr3 133529215 133529420 -26070363 - Lx2 LINE L1 -2 6995 6790 2 1603 31 0 0 0 chr3 133529466 133529497 -26070286 + AT_rich Low_complexity Low_complexity 1 31 0 2 1603 354 286 34 40 chr3 133529499 133529674 -26070109 + MuRRS4-int LTR ERV1 525 698 -6858 2 1603 1203 334 70 58 chr3 133530154 133531360 -26068423 + MuRRS4-int LTR ERV1 1051 2417 -5139 2 1603 1387 322 58 33 chr3 133531480 133532746 -26067037 + MuRRS4-int LTR ERV1 3533 5308 -2298 2 1603 268 341 33 16 chr3 133532867 133533049 -26066734 + MMERGLN-int LTR ERV1 5363 5547 -2009 2 1603 225 108 0 0 chr3 133533355 133533392 -26066391 + (G)n Simple_repeat Simple_repeat 1 37 0 2 1603 395 342 19 19 chr3 133533615 133533886 -26065897 + MuRRS4-int LTR ERV1 4663 4933 -130 2 1603 2105 98 182 0 chr3 133533983 133534362 -26065421 + RLTR47_MM LTR ERV1 1 448 -84 2 1603 3983 140 3 45 chr3 133534368 133534431 -26065352 + Lx LINE L1 5167 5214 -669 2 1603 1539 61 0 0 chr3 133534431 133534629 -26065154 + L1_Mus2 LINE L1 6367 6564 -2 2 1603 5308 130 20 22 chr3 133534629 133535897 -26063886 + Lx LINE L1 5215 6485 -169 2 1603 198 0 0 0 chr3 133535908 133535930 -26063853 + (CATA)n Simple_repeat Simple_repeat 2 23 0 2 1603 750 214 0 0 chr3 133537102 133537242 -26062541 - B1_Mur2 SINE Alu -8 141 2 2 1603 1209 167 9 23 chr3 133538759 133538974 -26060809 + URR1A DNA MER1_type 14 225 -1 3 1603 203 138 0 0 chr3 133540200 133540229 -26059554 + (GAAA)n Simple_repeat Simple_repeat 4 32 0 3 1603 477 0 0 0 chr3 133540255 133540308 -26059475 + (CA)n Simple_repeat Simple_repeat 2 54 0 3 1603 182 83 56 0 chr3 133540748 133540784 -26058999 + (TTTG)n Simple_repeat Simple_repeat 3 40 0 3 1603 190 426 21 21 chr3 133541255 133541351 -26058432 - L2b LINE L2 -21 3354 3259 3 1603 818 113 19 39 chr3 133542254 133542410 -26057373 + Lx4B LINE L1 6906 7058 0 3 1603 1057 275 132 33 chr3 133542595 133543147 -26056636 + Lx8 LINE L1 6720 7326 -147 3 1603 245 263 18 0 chr3 133543219 133543276 -26056507 + GA-rich Low_complexity Low_complexity 3 60 0 3 1603 324 0 0 0 chr3 133543302 133543338 -26056445 + (TG)n Simple_repeat Simple_repeat 2 37 0 3 1603 468 0 0 0 chr3 133543544 133543596 -26056187 + (GA)n Simple_repeat Simple_repeat 1 52 0 3 1603 333 0 0 0 chr3 133543984 133544021 -26055762 + (CA)n Simple_repeat Simple_repeat 2 38 0 4 1603 228 308 90 0 chr3 133544661 133544739 -26055044 - B1F SINE Alu -32 117 33 4 1603 1018 181 41 14 chr3 133545498 133545717 -26054066 - URR1A DNA MER1_type 0 226 2 4 1603 186 103 0 0 chr3 133545731 133545760 -26054023 + (TG)n Simple_repeat Simple_repeat 2 30 0 4 1603 234 338 54 83 chr3 133545984 133546226 -26053557 + ORR1D2 LTR MaLR 88 322 -48 4 1603 865 201 0 0 chr3 133546348 133546492 -26053291 + B1_Mur4 SINE Alu 2 145 -5 4 1603 502 277 22 0 chr3 133546669 133546806 -26052977 + B1_Mur2 SINE Alu 1 140 -9 4 1603 558 313 92 0 chr3 133546822 133546985 -26052798 + ID_B1 SINE B4 35 212 -12 4 1603 239 186 68 0 chr3 133547219 133547278 -26052505 + L1MA9 LINE L1 6212 6274 -38 4 1603 315 305 71 29 chr3 133547314 133547625 -26052158 + L1M4b LINE L1 1745 2068 -5034 4 1603 432 309 35 42 chr3 133547633 133547775 -26052008 + B1F2 SINE Alu 1 141 -8 5 1603 320 337 66 24 chr3 133547854 133548021 -26051762 + L1M4b LINE L1 2053 2226 -5108 4 1603 32630 71 13 1 chr3 133548029 133554092 -26045691 + L1Md_F2 LINE L1 410 6548 -34 5 1603 408 343 68 24 chr3 133554648 133554854 -26044929 - LTR16B LTR ERVL -217 246 32 5 1603 259 304 0 0 chr3 133555265 133555321 -26044462 + PB1D7 SINE Alu 65 120 0 5 1603 4252 71 2 9 chr3 133555527 133556093 -26043690 - L1Md_F2 LINE L1 -2 6580 6019 5 1603 5270 60 10 3 chr3 133556097 133556798 -26042985 - L1_Mm LINE L1 -112 5771 5066 5 1603 10211 11 0 0 chr3 133556799 133558700 -26041083 - L1Md_A LINE L1 0 6582 4682 5 1603 4616 77 1 3 chr3 133558700 133559351 -26040432 - L1_Mm LINE L1 -801 5082 4433 5 1603 364 344 86 27 chr3 133559369 133560172 -26039611 + L1M4b LINE L1 3190 4039 -2964 4 1603 311 366 18 18 chr3 133560258 133560422 -26039361 + L1MCb LINE L1 36 199 -5846 5 1603 530 279 23 0 chr3 133560456 133560585 -26039198 - RCHARR1 DNA MER1_type -646 328 197 5 1603 1127 62 0 7 chr3 133561234 133561380 -26038403 - B1_Mus1 SINE Alu 0 148 4 5 1603 238 278 37 15 chr3 133561692 133561827 -26037956 + L1MCb LINE L1 3559 3696 -2868 5 200 675 322 66 47 chr3 133561833 133562534 -26037249 - L1M2 LINE L1 -2784 3359 2643 6 1604 540 0 0 0 chr3 133562534 133562594 -26037189 + (TCTA)n Simple_repeat Simple_repeat 3 62 0 6 1604 675 322 66 47 chr3 133562594 133562710 -26037073 - L1M2 LINE L1 -3501 2642 2526 6 1604 489 17 0 0 chr3 133562757 133562815 -26036968 + (TG)n Simple_repeat Simple_repeat 1 58 0 6 1604 28 0 0 0 chr3 133562913 133562941 -26036842 + AT_rich Low_complexity Low_complexity 1 28 0 6 1604 493 335 21 0 chr3 133563230 133563421 -26036362 + Lx8 LINE L1 7080 7274 -199 6 1604 1209 276 102 30 chr3 133563508 133564248 -26035535 + Lx7 LINE L1 5080 5903 -1793 6 1604 941 252 5 28 chr3 133564541 133564757 -26035026 + B3 SINE B2 1 211 -5 6 1604 306 286 0 0 chr3 133565730 133565856 -26033927 + (TG)n Simple_repeat Simple_repeat 1 126 0 6 1604 393 291 0 0 chr3 133565872 133566037 -26033746 + (TG)n Simple_repeat Simple_repeat 2 166 0 6 1604 267 83 0 0 chr3 133567182 133567218 -26032565 + ORR1C2 LTR MaLR 42 77 -307 6 1604 2035 48 12 0 chr3 133567226 133567478 -26032305 + L1_Mus1 LINE L1 6312 6566 -1 6 1604 1310 187 174 21 chr3 133567581 133567914 -26031869 + ORR1C2 LTR MaLR 1 384 0 7 1604 950 285 25 40 chr3 133568202 133568435 -26031348 + B4A SINE B4 3 233 -59 7 1604 903 185 149 0 chr3 133568435 133568630 -26031153 + URR1B DNA MER1_type 1 224 -1 7 1604 950 285 25 40 chr3 133568630 133568674 -26031109 + B4A SINE B4 234 276 -16 7 1604 220 292 0 15 chr3 133568695 133568761 -26031022 + (CATA)n Simple_repeat Simple_repeat 3 67 0 7 1604 777 283 33 38 chr3 133568879 133569272 -26030511 - L1M2 LINE L1 -2362 3781 3391 7 1604 182 159 0 43 chr3 133569278 133569324 -26030459 + (TATG)n Simple_repeat Simple_repeat 2 45 0 7 1604 7304 118 21 6 chr3 133569686 133571206 -26028577 - Lx LINE L1 -4 6650 5117 7 1604 2404 83 43 34 chr3 133571206 133571556 -26028227 - L1Md_F2 LINE L1 -17 6565 6213 7 1604 7304 153 16 8 chr3 133571556 133572108 -26027675 - Lx LINE L1 -767 5116 4548 7 1604 203 188 0 20 chr3 133572312 133572361 -26027422 + (CATA)n Simple_repeat Simple_repeat 1 48 0 7 1604 929 307 46 79 chr3 133574718 133575131 -26024652 - MTE2b LTR MaLR -14 405 18 7 1604 183 42 0 0 chr3 133575404 133575428 -26024355 + (CAA)n Simple_repeat Simple_repeat 1 24 0 8 1604 881 304 14 0 chr3 133575443 133575660 -26024123 + ID_B1 SINE B4 3 222 -2 8 1604 935 260 205 3 chr3 133575763 133576060 -26023723 - ORR1D2 LTR MaLR -12 358 2 8 1604 450 0 0 0 chr3 133576375 133576425 -26023358 + (TTC)n Simple_repeat Simple_repeat 2 51 0 8 1604 369 0 0 0 chr3 133577089 133577130 -26022653 + (CAAAA)n Simple_repeat Simple_repeat 3 43 0 8 1604 4775 108 5 21 chr3 133577506 133578925 -26020858 + L1VL4 LINE L1 194 1585 -1974 8 1604 432 0 0 0 chr3 133579004 133579052 -26020731 + (TA)n Simple_repeat Simple_repeat 2 49 0 8 1604 4424 133 40 21 chr3 133579318 133580041 -26019742 + RMER19A LTR ERVK 1 737 0 8 1604 32 26 0 0 chr3 133580297 133580336 -26019447 + AT_rich Low_complexity Low_complexity 1 39 0 8 1604 624 127 0 0 chr3 133580838 133580938 -26018845 + (TC)n Simple_repeat Simple_repeat 1 100 0 8 1604 192 40 0 0 chr3 133580938 133580963 -26018820 + (TG)n Simple_repeat Simple_repeat 2 26 0 9 1604 624 127 0 0 chr3 133580963 133580988 -26018795 + (TC)n Simple_repeat Simple_repeat 2 26 0 9 1604 2372 199 136 22 chr3 133581015 133581662 -26018121 - Lx5 LINE L1 -338 6712 5992 9 1604 215 103 0 25 chr3 133582076 133582116 -26017667 + (TTA)n Simple_repeat Simple_repeat 3 41 0 9 1604 259 174 29 14 chr3 133582548 133582618 -26017165 + (TTTA)n Simple_repeat Simple_repeat 4 74 0 9 1604 730 261 31 5 chr3 133582643 133582836 -26016947 - B3 SINE B2 -14 202 5 9 1604 1590 252 60 18 chr3 133582890 133583500 -26016283 + RMER1A Other Other 16 452 -578 9 1604 1992 198 83 2 chr3 133583592 133584037 -26015746 + RMER1B Other Other 583 1063 -3 9 1604 1049 72 14 0 chr3 133584136 133584274 -26015509 + B1_Mm SINE Alu 2 141 -6 9 1604 1222 284 97 19 chr3 133584336 133585247 -26014536 - L1M2 LINE L1 -721 5458 4477 9 1604 245 235 29 29 chr3 133585306 133585376 -26014407 - RLTR28B LTR ERVL -21 503 434 9 1604 883 232 201 31 chr3 133585405 133585699 -26014084 - RLTR28B LTR ERVL -137 344 1 9 1604 279 79 0 0 chr3 133586590 133586628 -26013155 + (TCTCC)n Simple_repeat Simple_repeat 3 40 0 1 1604 8499 208 50 18 chr3 133586894 133589278 -26010505 - Lx7 LINE L1 -16 7680 5207 1 1604 2627 50 0 43 chr3 133590436 133590788 -26008995 - L1Md_F3 LINE L1 -13 6571 6235 1 1604 2705 48 3 6 chr3 133590788 133591143 -26008640 + L1Md_F3 LINE L1 5892 6245 -337 1 1604 518 275 23 10 chr3 133591702 133591848 -26007935 - MLT1A1 LTR MaLR 0 408 230 1 1604 26 30 0 0 chr3 133591918 133591951 -26007832 + AT_rich Low_complexity Low_complexity 1 33 0 1 1604 354 244 47 0 chr3 133592168 133592254 -26007529 - MLT1A1 LTR MaLR -301 107 18 1 1604 204 40 0 0 chr3 133592438 133592463 -26007320 + (TTATA)n Simple_repeat Simple_repeat 4 28 0 1 1604 219 361 44 58 chr3 133592483 133592689 -26007094 + L3b LINE CR1 186 388 -94 1 1604 552 318 17 78 chr3 133593258 133593603 -26006180 - Lx9 LINE L1 -361 7283 6960 1 1604 1297 301 54 50 chr3 133593928 133594574 -26005209 - Lx8 LINE L1 -121 7352 6704 1 1604 572 297 0 7 chr3 133594588 133594737 -26005046 - Lx8 LINE L1 -874 6599 6452 1 1604 299 367 58 5 chr3 133594739 133594928 -26004855 - Charlie7 DNA MER1_type -2009 603 405 1 1604 287 189 132 11 chr3 133594943 133595034 -26004749 - Lx9 LINE L1 -7 7637 7536 1 1604 23 0 0 0 chr3 133595276 133595299 -26004484 + AT_rich Low_complexity Low_complexity 1 23 0 1 1604 272 389 35 0 chr3 133595560 133595673 -26004110 + PB1D9 SINE Alu 1 117 -3 1 1604 348 303 124 0 chr3 133595737 133595882 -26003901 + U1 snRNA snRNA 1 163 -2 1 1604 439 328 1 38 chr3 133595950 133596139 -26003644 + Lx7 LINE L1 6427 6614 -859 1 1604 1337 288 37 29 chr3 133596138 133596624 -26003159 + Lx7 LINE L1 6822 7311 -385 1 1604 38 75 0 18 chr3 133596717 133596747 -26003036 + AT_rich Low_complexity Low_complexity 1 30 0 1 1604 8041 29 3 1 chr3 133596747 133597690 -26002093 + L1Md_F2 LINE L1 5638 6582 0 1 1604 38 75 0 18 chr3 133597690 133597768 -26002015 + AT_rich Low_complexity Low_complexity 1 77 0 1 1604 659 365 90 21 chr3 133598207 133598641 -26001142 - LTR16B1 LTR ERVL -15 465 2 1 1604 1167 117 11 16 chr3 133598738 133598921 -26000862 + B2_Mm1t SINE B2 2 183 -10 1 1604 439 294 128 10 chr3 133599971 133600167 -25999616 - Lx8 LINE L1 -78 7395 7177 1 1604 450 281 68 25 chr3 133600184 133600421 -25999362 + L1_Mur3 LINE L1 1501 1747 -4133 1 1604 366 23 0 0 chr3 133600792 133600835 -25998948 + (TC)n Simple_repeat Simple_repeat 2 44 0 1 1604 234 0 0 0 chr3 133601146 133601172 -25998611 + (T)n Simple_repeat Simple_repeat 1 26 0 1 1604 396 128 127 9 chr3 133601943 133602053 -25997730 - Lx3_Mus LINE L1 -1 7008 6886 1 1604 255 101 58 0 chr3 133602057 133602126 -25997657 + T-rich Low_complexity Low_complexity 5 77 0 1 1604 1246 48 0 0 chr3 133602126 133602273 -25997510 - B1_Mm SINE Alu 0 147 1 1 1604 759 72 0 0 chr3 133602460 133602557 -25997226 - B1_Mm SINE Alu -50 97 1 1 1604 419 248 0 110 chr3 133602557 133602578 -25997205 - MT2B LTR ERVL -349 252 148 1 1604 209 83 28 0 chr3 133603023 133603059 -25996724 + (TTCC)n Simple_repeat Simple_repeat 1 37 0 1 1604 938 167 0 6 chr3 133603059 133603147 -25996636 + polypyrimidine Low_complexity Low_complexity 93 180 0 1 1604 1242 100 0 0 chr3 133603147 133603327 -25996456 + (TCCC)n Simple_repeat Simple_repeat 1 180 0 1 1604 938 167 0 6 chr3 133603327 133603419 -25996364 + polypyrimidine Low_complexity Low_complexity 1 92 0 1 1604 413 315 0 0 chr3 133603457 133603565 -25996218 - PB1D10 SINE Alu -7 110 3 1 1604 361 293 156 25 chr3 133604073 133604311 -25995472 + L1M4 LINE L1 3337 3605 -2541 1 1604 581 324 0 27 chr3 133604587 133604733 -25995050 - B1F2 SINE Alu -6 143 2 1 1604 340 362 31 6 chr3 133605200 133605361 -25994422 - MER5B DNA MER1_type -9 169 5 1 1604 1989 138 28 3 chr3 133606304 133606623 -25993160 - ORR1A2 LTR MaLR 0 327 1 1 1604 324 0 0 0 chr3 133606847 133606883 -25992900 + (TTTTG)n Simple_repeat Simple_repeat 2 37 0 1 1604 332 353 53 99 chr3 133606885 133607168 -25992615 - ORR1E LTR MaLR 0 359 90 1 1604 1144 356 129 19 chr3 133607288 133607924 -25991859 - MTE-int LTR MaLR -28 1552 847 1 1604 990 320 110 41 chr3 133607951 133608515 -25991268 - MTE-int LTR MaLR -963 617 15 1 1604 1279 165 49 8 chr3 133609020 133609264 -25990519 - Lx4B LINE L1 -213 6845 6592 1 1604 13684 56 2 0 chr3 133609264 133611232 -25988551 + L1Md_F2 LINE L1 4048 6018 -564 1 1604 34867 31 2 7 chr3 133611233 133616460 -25983323 + L1Md_A LINE L1 391 5586 -297 1 1604 8145 39 6 0 chr3 133616460 133617448 -25982335 + L1Md_A LINE L1 5587 6580 -2 1 1604 200 75 0 91 chr3 133617464 133617487 -25982296 + A-rich Low_complexity Low_complexity 1 23 0 1 1604 4523 59 7 2 chr3 133617487 133618082 -25981701 + L1Md_F2 LINE L1 6005 6582 0 1 1604 622 139 59 0 chr3 133618082 133618183 -25981600 - Lx4B LINE L1 -451 6607 6501 1 1604 731 197 120 0 chr3 133618179 133618362 -25981421 + Lx4B LINE L1 6850 7054 -4 1 1604 23 0 0 0 chr3 133618381 133618404 -25981379 + AT_rich Low_complexity Low_complexity 1 23 0 1 1604 360 303 35 84 chr3 133618922 133619149 -25980634 + LTR52 LTR ERVL 25 240 -181 1 1604 28 61 0 0 chr3 133620378 133620427 -25979356 + AT_rich Low_complexity Low_complexity 1 49 0 1 1604 938 116 0 13 chr3 133621324 133621481 -25978302 + (TCTA)n Simple_repeat Simple_repeat 1 155 0 1 1604 228 178 192 0 chr3 133621636 133621709 -25978074 + L1MA9 LINE L1 6160 6246 -66 1 1604 24 67 0 0 chr3 133621789 133621834 -25977949 + AT_rich Low_complexity Low_complexity 1 45 0 1 1604 998 287 121 34 chr3 133621848 133622462 -25977321 - Lx9 LINE L1 -21 7623 6957 1 1604 186 257 280 13 chr3 133622500 133622575 -25977208 + L2c LINE L2 3272 3366 -21 1 1604 276 189 41 21 chr3 133623019 133623116 -25976667 + CT-rich Low_complexity Low_complexity 3 101 0 1 1604 183 80 0 0 chr3 133623117 133623142 -25976641 + (CA)n Simple_repeat Simple_repeat 1 25 0 1 1604 293 264 23 11 chr3 133623359 133623447 -25976336 - Lx8 LINE L1 -683 6790 6702 1 1604 355 235 24 0 chr3 133623451 133623536 -25976247 - Lx8 LINE L1 -1198 6275 6189 1 1604 549 0 0 0 chr3 133624862 133624923 -25974860 + (TCC)n Simple_repeat Simple_repeat 3 63 0 1 1604 398 249 109 39 chr3 133624924 133625058 -25974725 - RSINE1 SINE B4 -29 136 2 1 1604 429 20 0 0 chr3 133625059 133625109 -25974674 + (TC)n Simple_repeat Simple_repeat 1 50 0 1 1604 342 0 0 0 chr3 133625943 133625981 -25973802 + (TTTA)n Simple_repeat Simple_repeat 3 40 0 1 1604 812 286 47 13 chr3 133626059 133626293 -25973490 - MTE2b LTR MaLR -12 367 126 1 1604 231 88 0 0 chr3 133626307 133626341 -25973442 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 1 1604 330 250 69 23 chr3 133626379 133626510 -25973273 + L1M2 LINE L1 5625 5761 -530 1 1604 411 73 0 0 chr3 133626657 133626712 -25973071 + (GGA)n Simple_repeat Simple_repeat 2 56 0 1 1604 312 186 129 0 chr3 133626790 133626860 -25972923 - MTE2b LTR MaLR -300 79 1 1 1604 24 53 0 0 chr3 133627641 133627679 -25972104 + AT_rich Low_complexity Low_complexity 1 38 0 1 1604 1274 174 183 127 chr3 133627765 133628192 -25971591 + RMER6B LTR ERVK 1 451 -10 1 1604 495 118 0 0 chr3 133629628 133629704 -25970079 + (CAG)n Simple_repeat Simple_repeat 2 77 0 1 1604 181 260 59 20 chr3 133631071 133631122 -25968661 - L3 LINE CR1 -3603 886 834 1 1604 531 289 153 19 chr3 133633187 133633531 -25966252 + LTR84a LTR ERVL 8 399 -362 1 1604 248 377 43 43 chr3 133633534 133633695 -25966088 - LTR16D LTR ERVL -10 641 481 1 1604 1223 173 27 0 chr3 133633873 133634093 -25965690 - URR1A DNA MER1_type 0 226 1 1 1604 431 340 85 16 chr3 133636613 133636801 -25962982 + B3 SINE B2 3 203 -13 1 1604 2341 89 67 3 chr3 133637096 133637455 -25962328 - L1_Mus3 LINE L1 -2 6636 6255 1 1604 1329 199 265 12 chr3 133637462 133637798 -25961985 - MTC LTR MaLR 0 421 1 1 1604 7255 76 1 6 chr3 133638110 133639391 -25960392 - L1Md_F2 LINE L1 -2 6580 5306 1 1604 593 250 186 38 chr3 133639391 133639628 -25960155 - RLTR10A LTR ERVK 0 411 140 1 1604 1728 289 52 44 chr3 133639669 133642193 -25957590 - RLTR45-int LTR ERVK -202 7042 3208 1 1604 736 285 58 47 chr3 133642194 133642728 -25957055 - RLTR45-int LTR ERVK -3870 2672 2133 1 1604 265 211 55 55 chr3 133643416 133643526 -25956257 - RLTR10-int LTR ERVK -1559 428 319 1 1604 617 232 183 50 chr3 133643529 133643769 -25956014 - RLTR10A LTR ERVK 0 411 140 1 1604 27511 114 22 22 chr3 133643821 133648891 -25950892 - L1Md_F LINE L1 -572 5311 240 1 1604 1614 246 79 3 chr3 133649006 133649360 -25950423 - MTD LTR MaLR -5 414 34 1 1604 210 143 0 0 chr3 133649884 133649919 -25949864 + (CATATA)n Simple_repeat Simple_repeat 6 40 0 1 1604 321 279 0 0 chr3 133650145 133650213 -25949570 + L2b LINE L2 3308 3375 0 1 1604 274 344 20 15 chr3 133650495 133650693 -25949090 - L1ME1 LINE L1 -124 6055 5857 1 1604 400 228 61 30 chr3 133650788 133650919 -25948864 + ORR1E LTR MaLR 4 138 -221 1 1604 321 68 0 0 chr3 133651304 133651348 -25948435 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 1 1604 1162 68 7 0 chr3 133651351 133651497 -25948286 - B1_Mm SINE Alu 0 147 1 1 1604 823 269 22 0 chr3 133652050 133652232 -25947551 - B3 SINE B2 -7 209 24 1 1604 825 284 31 104 chr3 133652397 133652876 -25946907 - Lx8 LINE L1 -154 7319 6876 1 1604 226 255 0 56 chr3 133653824 133653878 -25945905 - 5S rRNA rRNA -70 51 1 1 1604 310 147 101 25 chr3 133654096 133654127 -25945656 + RMER17D LTR ERVK 246 285 -604 1 1604 1062 112 6 11 chr3 133654127 133654307 -25945476 + (TTCC)n Simple_repeat Simple_repeat 2 180 0 1 1604 310 147 101 25 chr3 133654307 133654394 -25945389 + RMER17D LTR ERVK 286 373 -516 1 1604 1509 189 28 14 chr3 133654416 133654701 -25945082 - ORR1C1-int LTR MaLR -1220 289 1 1 1604 1390 202 106 73 chr3 133654701 133655059 -25944724 - ORR1C1 LTR MaLR 0 378 9 1 1604 573 15 0 0 chr3 133655109 133655175 -25944608 + (GA)n Simple_repeat Simple_repeat 1 66 0 1 1604 212 162 0 26 chr3 133655989 133656027 -25943756 + MIR3 SINE MIR 125 161 -47 1 1604 1051 282 66 63 chr3 133656187 133656565 -25943218 - MTEa LTR MaLR 0 379 1 1 1604 447 269 55 41 chr3 133656761 133656918 -25942865 - MIRb SINE MIR -94 174 16 1 1604 385 284 17 105 chr3 133659009 133659190 -25940593 + URR1B DNA MER1_type 61 225 0 1 1604 231 203 102 0 chr3 133659551 133659610 -25940173 - MER20B DNA MER1_type -271 512 448 1 1604 346 292 119 38 chr3 133659801 133659961 -25939822 - MER20B DNA MER1_type -580 203 31 1 1604 240 35 0 0 chr3 133660279 133660308 -25939475 + (T)n Simple_repeat Simple_repeat 1 29 0 1 1604 245 208 75 0 chr3 133660898 133660951 -25938832 + L2a LINE L2 3343 3399 -27 1 1604 765 156 39 0 chr3 133662129 133662257 -25937526 - B1_Mur3 SINE Alu -14 135 3 2 1604 180 250 37 37 chr3 133663087 133663141 -25936642 + MIRb SINE MIR 42 95 -173 2 1604 21 36 0 0 chr3 133663611 133663639 -25936144 + AT_rich Low_complexity Low_complexity 1 28 0 2 1604 181 302 0 31 chr3 133664601 133664666 -25935117 - L2a LINE L2 -26 3400 3338 2 1604 222 330 144 25 chr3 133664750 133664868 -25934915 - L2a LINE L2 -384 3035 2904 2 1604 24 0 0 0 chr3 133665268 133665292 -25934491 + AT_rich Low_complexity Low_complexity 1 24 0 2 1604 739 273 0 53 chr3 133665302 133665530 -25934253 - B3 SINE B2 0 216 1 2 1604 519 318 94 86 chr3 133665785 133666136 -25933647 - ORR1E LTR MaLR -5 354 1 2 1604 203 349 197 5 chr3 133666389 133666582 -25933201 - MIRc SINE MIR -22 246 17 2 1604 4360 52 6 0 chr3 133666695 133667229 -25932554 - L1_Mus1 LINE L1 0 6567 6031 2 1604 1968 107 7 0 chr3 133667229 133667528 -25932255 + L1Md_F LINE L1 589 889 -5630 2 1604 180 205 26 0 chr3 133667700 133667739 -25932044 + MIRc SINE MIR 107 146 -122 2 1604 830 337 32 51 chr3 133668084 133668456 -25931327 - MLT1A0 LTR MaLR 0 365 1 2 1604 23 33 0 0 chr3 133669358 133669388 -25930395 + AT_rich Low_complexity Low_complexity 1 30 0 2 1604 3996 121 53 24 chr3 133669678 133670397 -25929386 + Lx LINE L1 5855 6594 -60 2 1604 4441 14 0 0 chr3 133670404 133670897 -25928886 + MT2_Mm LTR ERVL 1 493 0 2 1604 45330 14 8 0 chr3 133670897 133676217 -25923566 + MERVL-int LTR ERVL 1 5360 -125 2 1604 390 167 46 35 chr3 133676217 133676304 -25923479 + ORR1A3-int LTR MaLR 553 640 -1323 2 1604 302 0 0 0 chr3 133676304 133676342 -25923441 + MERVL-int LTR ERVL 5448 5485 0 2 1604 4441 14 0 0 chr3 133676342 133676835 -25922948 + MT2_Mm LTR ERVL 1 493 0 2 1604 292 105 0 0 chr3 133676838 133676895 -25922888 + Lx LINE L1 6598 6654 0 2 1604 308 270 59 34 chr3 133677048 133677167 -25922616 - MTEb LTR MaLR 0 379 258 2 1604 36 23 0 0 chr3 133681518 133681561 -25918222 + AT_rich Low_complexity Low_complexity 1 43 0 2 1604 267 299 60 30 chr3 133682462 133682562 -25917221 - MER115 DNA Tip100 -88 605 503 2 1604 341 298 26 9 chr3 133682673 133682788 -25916995 - ORR1D1 LTR MaLR 0 374 258 2 1604 6716 113 10 31 chr3 133682949 133684084 -25915699 - Lx LINE L1 -1 6653 5540 2 1604 3900 232 56 24 chr3 133684211 133685234 -25914549 + Lx5 LINE L1 5996 7050 0 2 1604 440 316 0 0 chr3 133685277 133685394 -25914389 + MLT1B LTR MaLR 271 387 -3 2 1604 580 376 65 47 chr3 133685570 133685908 -25913875 + MLT1E3 LTR MaLR 270 613 -11 2 1604 233 140 60 0 chr3 133686925 133686975 -25912808 + CT-rich Low_complexity Low_complexity 3 55 0 2 1604 311 340 52 0 chr3 133687010 133687107 -25912676 - RSINE1 SINE B4 0 165 64 2 1604 34602 51 3 1 chr3 133687247 133692579 -25907204 - L1Md_F3 LINE L1 0 6584 1242 2 1604 536 202 28 0 chr3 133692578 133692687 -25907096 - Lx6 LINE L1 -213 7247 7136 2 1604 2546 211 28 45 chr3 133692691 133693331 -25906452 + RMER1B Other Other 438 1066 0 2 200 2302 219 68 2 chr3 133693429 133693960 -25905823 - Lx6 LINE L1 -311 7149 6584 2 1605 251 330 58 50 chr3 133694383 133694504 -25905279 - L2c LINE L2 -15 3372 3251 2 1605 240 333 42 75 chr3 133694652 133694772 -25905011 - ORR1E LTR MaLR -243 116 1 2 1605 7085 92 11 0 chr3 133695387 133696571 -25903212 - L1_Mus3 LINE L1 -20 6618 5423 2 1605 369 0 0 0 chr3 133696970 133697011 -25902772 + (CA)n Simple_repeat Simple_repeat 1 41 0 2 1605 3085 109 18 2 chr3 133698875 133699324 -25900459 - Lx LINE L1 -4 6650 6195 2 1605 452 282 64 35 chr3 133699378 133699572 -25900211 + L2c LINE L2 3215 3426 0 2 1605 283 357 20 0 chr3 133700916 133701014 -25898769 - B1F1 SINE Alu -32 117 18 2 1605 3476 304 86 23 chr3 133702732 133705673 -25894110 + L1_Mur3 LINE L1 1243 4368 -1512 2 1605 911 275 51 14 chr3 133705855 133706206 -25893577 + L1_Rod LINE L1 4829 5192 -655 2 1605 384 77 0 0 chr3 133706327 133706379 -25893404 + (GGGGA)n Simple_repeat Simple_repeat 2 53 0 2 1605 383 325 37 6 chr3 133706430 133706594 -25893189 - Lx8 LINE L1 -723 6750 6582 2 1605 232 281 85 20 chr3 133706650 133706850 -25892933 - L1MD LINE L1 -2820 3326 3114 2 1605 380 111 16 0 chr3 133707746 133707809 -25891974 + (TATG)n Simple_repeat Simple_repeat 3 66 0 2 1605 311 185 58 58 chr3 133707855 133707924 -25891859 - B4 SINE B4 -22 270 202 2 1605 327 25 0 0 chr3 133708045 133708085 -25891698 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 2 1605 1829 296 119 55 chr3 133708140 133708987 -25890796 - Lx8 LINE L1 -110 7363 6425 2 1605 1095 51 0 0 chr3 133708987 133709125 -25890658 + (GGAA)n Simple_repeat Simple_repeat 3 140 0 2 1605 1829 296 119 55 chr3 133709125 133709380 -25890403 - Lx8 LINE L1 -1049 6424 6191 2 1605 568 309 83 10 chr3 133710422 133710863 -25888920 - L1MA4 LINE L1 -257 6046 5579 2 1605 282 296 58 58 chr3 133712088 133712242 -25887541 + L3 LINE CR1 3896 4049 -440 2 1605 4041 64 4 2 chr3 133712390 133712954 -25886829 - L1_Mus1 LINE L1 0 6567 6049 2 1605 22 0 0 0 chr3 133714360 133714382 -25885401 + AT_rich Low_complexity Low_complexity 1 22 0 2 1605 243 291 97 64 chr3 133715804 133716146 -25883637 + L1_Mur3 LINE L1 906 1258 -6454 2 1605 284 275 10 99 chr3 133716379 133716480 -25883303 + ORR1E LTR MaLR 1 92 -282 2 1605 257 299 109 33 chr3 133716559 133716742 -25883041 + ORR1E LTR MaLR 90 286 -88 2 1605 9152 79 32 17 chr3 133717126 133718589 -25881194 + Lx3_Mus LINE L1 5532 7009 0 2 1605 21 57 0 0 chr3 133718589 133718624 -25881159 + AT_rich Low_complexity Low_complexity 1 35 0 2 1605 680 283 46 70 chr3 133719027 133719415 -25880368 - MTE2a LTR MaLR 0 379 1 2 1605 21 0 0 0 chr3 133719964 133719985 -25879798 + AT_rich Low_complexity Low_complexity 1 21 0 2 1605 462 49 0 0 chr3 133719986 133720047 -25879736 + (TG)n Simple_repeat Simple_repeat 2 62 0 2 1605 498 320 32 32 chr3 133720052 133720207 -25879576 - B3A SINE B2 -41 157 3 2 1605 389 294 37 30 chr3 133720221 133720458 -25879325 - L1M2 LINE L1 -381 5808 5590 2 1605 2198 67 0 0 chr3 133720531 133720815 -25878968 + L1Md_F2 LINE L1 6299 6582 0 2 1605 518 79 13 0 chr3 133720860 133720936 -25878847 + (TTCTC)n Simple_repeat Simple_repeat 2 78 0 2 1605 15986 131 4 119 chr3 133721023 133723368 -25876415 - L1Md_F3 LINE L1 -14 6570 4320 2 1605 198 0 0 0 chr3 133723368 133723390 -25876393 + (TAAAA)n Simple_repeat Simple_repeat 2 23 0 2 1605 15986 178 6 203 chr3 133723390 133723566 -25876217 - L1Md_F3 LINE L1 -1567 4319 4197 2 1605 399 38 0 0 chr3 133723566 133723619 -25876164 + RLTR1 LTR ERV1 1 53 -571 2 1605 15986 178 6 203 chr3 133723619 133726799 -25872984 - L1Md_F3 LINE L1 -1567 4196 1964 2 1605 234 0 0 0 chr3 133726799 133726825 -25872958 + (TTG)n Simple_repeat Simple_repeat 2 27 0 2 1605 15986 146 36 113 chr3 133726825 133728311 -25871472 - L1Md_F3 LINE L1 -3923 1963 447 2 1605 335 140 20 61 chr3 133728311 133728410 -25871373 - L1Md_A LINE L1 0 6582 6488 2 1605 4596 116 65 27 chr3 133728410 133728465 -25871318 - L1Md_F3 LINE L1 -6170 446 392 2 1605 358 272 41 45 chr3 133728530 133728776 -25871007 - L1M2 LINE L1 -764 5379 5135 2 1605 219 226 0 0 chr3 133728796 133728849 -25870934 + CT-rich Low_complexity Low_complexity 2 54 0 2 1605 280 289 53 0 chr3 133729948 133730024 -25869759 - B3 SINE B2 -12 204 125 2 1605 799 200 28 0 chr3 133730392 133730537 -25869246 - B1_Mur3 SINE Alu 0 149 1 2 1605 841 247 113 23 chr3 133730888 133731201 -25868582 + L1M2 LINE L1 2791 3129 -3014 2 1605 215 61 30 0 chr3 133731201 133731234 -25868549 + (TAA)n Simple_repeat Simple_repeat 2 35 0 2 1605 841 247 113 23 chr3 133731234 133731309 -25868474 + L1M2 LINE L1 3130 3214 -2929 2 1605 489 281 11 7 chr3 133731797 133731985 -25867798 + L1_Mur1 LINE L1 3460 3646 -2231 2 1605 307 212 0 28 chr3 133732113 133732191 -25867592 + B1F SINE Alu 75 142 -7 2 1605 425 263 107 49 chr3 133732204 133732320 -25867463 + L1M2 LINE L1 3700 3829 -2314 2 1605 1613 141 153 14 chr3 133732320 133732607 -25867176 + ORR1A2 LTR MaLR 1 327 0 2 1605 425 263 107 49 chr3 133732607 133732714 -25867069 + L1M2 LINE L1 3830 3936 -2207 2 1605 356 228 64 93 chr3 133732715 133732855 -25866928 + MT2B LTR ERVL 143 278 -323 2 1605 824 72 9 0 chr3 133732770 133732881 -25866902 + B1_Mus2 SINE Alu 36 147 0 2 1605 327 0 36 54 chr3 133732883 133732939 -25866844 + (CAAAA)n Simple_repeat Simple_repeat 2 56 0 2 1605 727 248 156 45 chr3 133733037 133733260 -25866523 + MTEb LTR MaLR 31 278 -101 2 1605 933 259 44 131 chr3 133733260 133733673 -25866110 - MTE2a LTR MaLR -2 377 1 2 1605 354 229 83 0 chr3 133733680 133733776 -25866007 + MTEb LTR MaLR 276 379 0 2 1605 1599 89 100 4 chr3 133733805 133734064 -25865719 - L1_Mus3 LINE L1 -527 6111 5828 2 1605 3944 78 6 4 chr3 133734064 133734588 -25865195 + L1_Mus3 LINE L1 6111 6635 -3 2 1605 6283 52 4 0 chr3 133734739 133735522 -25864261 + L1Md_F2 LINE L1 5785 6570 -12 2 1605 827 289 139 64 chr3 133735591 133735735 -25864048 + MTD LTR MaLR 5 171 -248 2 1605 4750 139 9 24 chr3 133735735 133736486 -25863297 + Lx4A LINE L1 6319 7058 0 2 1605 827 289 139 64 chr3 133736486 133736714 -25863069 + MTD LTR MaLR 172 405 -14 2 1605 306 357 18 18 chr3 133737691 133737805 -25861978 - B4 SINE B4 -169 123 10 2 1605 324 298 86 41 chr3 133738011 133738350 -25861433 - L1M5 LINE L1 -515 5609 5256 2 1605 31 26 0 0 chr3 133738428 133738466 -25861317 + AT_rich Low_complexity Low_complexity 1 38 0 2 1605 400 375 34 27 chr3 133739221 133739369 -25860414 + RSINE1 SINE B4 9 157 -8 2 1605 263 268 24 12 chr3 133739849 133739932 -25859851 - MLT1J2 LTR MaLR -11 437 354 2 1605 779 311 52 5 chr3 133740989 133741202 -25858581 - B4A SINE B4 -69 223 1 2 1605 552 68 0 0 chr3 133742068 133742141 -25857642 + (TA)n Simple_repeat Simple_repeat 1 73 0 2 1605 963 97 14 0 chr3 133743759 133743903 -25855880 - URR1A DNA MER1_type 0 226 81 2 1605 479 217 29 65 chr3 133743959 133744097 -25855686 + RMER15 LTR ERVL 27 159 -416 2 1605 256 273 13 0 chr3 133744096 133744173 -25855610 + RMER15 LTR ERVL 462 539 -36 2 1605 240 111 0 0 chr3 133744693 133744729 -25855054 + (T)n Simple_repeat Simple_repeat 1 36 0 2 1605 4489 147 37 5 chr3 133748813 133749606 -25850177 + L1Md_F2 LINE L1 278 1095 -5521 2 1605 2665 39 21 148 chr3 133749606 133750084 -25849699 + IAPLTR2_Mm LTR ERVK 1 417 -58 2 1605 1573 44 99 22 chr3 133750085 133750317 -25849466 + IAPLTR2_Mm LTR ERVK 226 475 0 2 1605 1005 176 0 34 chr3 133750317 133750378 -25849405 + MusHAL1 LINE L1 530 590 -2764 2 1605 264 30 0 0 chr3 133750378 133750411 -25849372 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 2 1605 30036 82 1 4 chr3 133750411 133754865 -25844918 + L1Md_F2 LINE L1 1143 5585 -298 2 1605 7090 82 9 20 chr3 133754866 133755871 -25843912 + L1Md_F2 LINE L1 5587 6580 -2 2 1605 481 268 24 8 chr3 133755987 133756111 -25843672 - ORR1E LTR MaLR -233 126 1 2 1605 335 347 40 0 chr3 133756543 133756667 -25843116 - B1F SINE Alu -3 146 18 2 1605 23 0 0 0 chr3 133756896 133756919 -25842864 + AT_rich Low_complexity Low_complexity 1 23 0 3 1605 6158 106 47 14 chr3 133757032 133757974 -25841809 - Lx3_Mus LINE L1 0 7009 6052 3 1605 456 19 0 0 chr3 133757974 133758027 -25841756 + (TCCC)n Simple_repeat Simple_repeat 1 53 0 3 1605 6158 106 47 14 chr3 133758027 133758045 -25841738 - Lx3_Mus LINE L1 -958 6051 6019 3 1605 2371 68 0 0 chr3 133758045 133758367 -25841416 + Lx3_Mus LINE L1 5669 5990 -1019 3 1605 282 298 94 24 chr3 133758369 133758496 -25841287 - B3A SINE B2 -59 136 1 3 1605 30 45 0 0 chr3 133758553 133758597 -25841186 + AT_rich Low_complexity Low_complexity 1 44 0 3 1605 1014 317 71 3 chr3 133759567 133759877 -25839906 + MTE2b LTR MaLR 12 342 -37 3 1605 1364 310 62 27 chr3 133759883 133760480 -25839303 + MTE-int LTR MaLR 1 618 -962 3 1605 909 271 123 18 chr3 133761069 133761411 -25838372 - MTEa LTR MaLR -1 378 1 3 1605 456 342 103 67 chr3 133761414 133762145 -25837638 + L3 LINE CR1 2805 3561 -928 3 1605 259 351 148 25 chr3 133762783 133763020 -25836763 + MLT1K LTR MaLR 164 429 -166 3 1605 1260 67 0 0 chr3 133763669 133763849 -25835934 + (TATG)n Simple_repeat Simple_repeat 1 180 0 3 1605 189 200 89 0 chr3 133764096 133764141 -25835642 - L2b LINE L2 -19 3356 3308 3 1605 361 382 129 17 chr3 133766422 133766832 -25832951 - L2 LINE L2 -1811 1608 1153 3 1605 21 0 0 0 chr3 133767904 133767925 -25831858 + AT_rich Low_complexity Low_complexity 1 21 0 3 1605 1026 301 34 0 chr3 133769525 133769847 -25829936 - Lx8 LINE L1 -292 7181 6849 3 1605 549 0 0 0 chr3 133769847 133769908 -25829875 + (GAA)n Simple_repeat Simple_repeat 2 62 0 3 1605 1119 97 0 0 chr3 133769908 133770084 -25829699 + (GGA)n Simple_repeat Simple_repeat 3 178 0 3 1605 1777 332 39 51 chr3 133770102 133771243 -25828540 - Lx8 LINE L1 -636 6837 5710 3 1605 31 26 0 0 chr3 133771886 133771924 -25827859 + AT_rich Low_complexity Low_complexity 1 38 0 3 1605 2160 56 4 0 chr3 133771928 133772197 -25827586 + L1Md_F2 LINE L1 6305 6574 -8 3 1605 1404 273 65 66 chr3 133772677 133773234 -25826549 - RMER15 LTR ERVL 0 575 20 3 1605 3700 52 19 0 chr3 133773870 133774332 -25825451 - L1Md_F3 LINE L1 -14 6570 6100 3 1605 451 259 81 85 chr3 133775709 133775945 -25823838 + LTR90A LTR LTR 131 365 -611 3 1605 201 74 0 0 chr3 133776037 133776064 -25823719 + (TATG)n Simple_repeat Simple_repeat 2 28 0 3 1605 632 310 58 10 chr3 133778168 133778373 -25821410 - B4A SINE B4 -75 217 3 3 1605 2144 81 17 78 chr3 133780090 133780450 -25819333 + L1Md_F2 LINE L1 6244 6581 -1 3 1605 243 221 242 0 chr3 133780457 133780552 -25819231 - L1MB1 LINE L1 -43 6146 6029 3 1605 255 269 70 70 chr3 133780659 133780787 -25818996 - L2 LINE L2 -964 2455 2328 3 1605 224 322 0 84 chr3 133780738 133780833 -25818950 + MIR SINE MIR 30 116 -92 3 1605 287 312 158 54 chr3 133781276 133781479 -25818304 + B4 SINE B4 2 225 -67 3 1605 2260 274 61 29 chr3 133781973 133782726 -25817057 + Lx8 LINE L1 6413 7189 -284 3 1605 609 254 69 47 chr3 133782788 133783065 -25816718 - RLTR15 LTR ERVK -76 283 1 3 1605 4093 164 9 9 chr3 133783099 133783843 -25815940 - Lx3C LINE L1 -2 6974 6231 3 1605 540 248 7 15 chr3 133783848 133783983 -25815800 + Lx8 LINE L1 7199 7332 -141 3 1605 29 0 0 0 chr3 133784087 133784116 -25815667 + AT_rich Low_complexity Low_complexity 1 29 0 3 1605 23 0 0 0 chr3 133784815 133784838 -25814945 + AT_rich Low_complexity Low_complexity 1 23 0 3 1605 1137 88 0 0 chr3 133785098 133785245 -25814538 - B1_Mus1 SINE Alu 0 148 2 3 1605 223 217 41 55 chr3 133785833 133785906 -25813877 + MIRc SINE MIR 7 78 -190 3 1605 1447 89 30 0 chr3 133786359 133786562 -25813221 + RMER17B LTR ERVK 1 209 -749 3 1605 2143 143 2 84 chr3 133786579 133786968 -25812815 + RMER17B LTR ERVK 566 933 -25 3 1605 3017 63 0 3 chr3 133786968 133787352 -25812431 - L1_Mus2 LINE L1 0 6566 6184 3 1605 2143 143 2 84 chr3 133787352 133787390 -25812393 + RMER17B LTR ERVK 934 958 0 3 1605 22 35 0 0 chr3 133788899 133788928 -25810855 + AT_rich Low_complexity Low_complexity 1 29 0 3 1605 207 69 0 0 chr3 133788988 133789017 -25810766 + (CA)n Simple_repeat Simple_repeat 2 30 0 3 1605 953 260 4 18 chr3 133789101 133789328 -25810455 - Lx9 LINE L1 -339 7305 7082 3 1605 294 381 14 28 chr3 133789481 133789624 -25810159 + B1F2 SINE Alu 1 141 -8 3 1605 1057 176 13 52 chr3 133790071 133790304 -25809479 + Lx2 LINE L1 6773 6996 -1 3 1605 1724 70 0 0 chr3 133790573 133790801 -25808982 + L1_Mus1 LINE L1 6340 6567 0 3 1605 34 24 0 0 chr3 133791789 133791830 -25807953 + AT_rich Low_complexity Low_complexity 1 41 0 3 1605 626 371 113 26 chr3 133791955 133792484 -25807299 - MamGypLTR1d LTR Gypsy -199 614 40 3 1605 219 167 30 15 chr3 133792848 133792915 -25806868 + (CATATA)n Simple_repeat Simple_repeat 4 71 0 3 1605 553 38 25 0 chr3 133792968 133793048 -25806735 + (TAGA)n Simple_repeat Simple_repeat 3 84 0 3 1605 22 0 0 0 chr3 133793184 133793206 -25806577 + AT_rich Low_complexity Low_complexity 1 22 0 3 1605 1169 310 77 46 chr3 133793338 133793835 -25805948 + MLT2B1 LTR ERVL 1 512 -8 3 1605 22 35 0 0 chr3 133793922 133793951 -25805832 + AT_rich Low_complexity Low_complexity 1 29 0 3 1605 421 360 53 68 chr3 133794240 133794634 -25805149 - MLT1B LTR MaLR -2 388 1 3 1605 713 136 93 0 chr3 133796313 133796431 -25803352 + B2_Mm2 SINE B2 2 130 -65 3 1605 306 122 0 0 chr3 133796731 133796772 -25803011 - HAL1-3A_ME LINE L1 -843 2015 1975 3 1605 336 228 8 30 chr3 133796792 133796923 -25802860 + (TATG)n Simple_repeat Simple_repeat 3 130 0 3 1605 277 288 30 0 chr3 133798167 133798233 -25801550 + PB1D10 SINE Alu 7 74 -43 3 1605 734 300 19 10 chr3 133798234 133798443 -25801340 + B3 SINE B2 1 211 -5 3 1605 25 65 0 0 chr3 133798444 133798490 -25801293 + AT_rich Low_complexity Low_complexity 1 46 0 3 1605 461 167 26 0 chr3 133798492 133798570 -25801213 + ID_B1 SINE B4 145 224 0 3 1605 25 0 0 0 chr3 133798736 133798761 -25801022 + AT_rich Low_complexity Low_complexity 1 25 0 3 1605 246 306 8 40 chr3 133798820 133798946 -25800837 + (CATATA)n Simple_repeat Simple_repeat 2 123 0 3 1605 267 374 18 171 chr3 133799776 133800115 -25799668 + MLT1N2 LTR MaLR 255 541 -21 3 1605 824 200 12 6 chr3 133800934 133801095 -25798688 - ORR1D-int LTR MaLR -1036 334 173 3 1605 4203 246 41 71 chr3 133801201 133803078 -25796705 + MYSERV16_I-int LTR ERVK 3 1324 -1002 3 1605 2399 223 71 26 chr3 133803080 133803770 -25796013 + MYSERV16_I-int LTR ERVK 5828 6548 -2 3 1605 2057 135 145 69 chr3 133803772 133804193 -25795590 + RLTR11B LTR ERVK 1 453 0 3 1605 463 246 16 16 chr3 133804790 133804907 -25794876 + B4A SINE B4 2 119 -46 3 1605 585 28 0 0 chr3 133804907 133804978 -25794805 + (CA)n Simple_repeat Simple_repeat 2 72 0 3 1605 423 0 0 0 chr3 133804978 133805024 -25794759 + (GA)n Simple_repeat Simple_repeat 2 48 0 3 1605 351 331 37 37 chr3 133805024 133805068 -25794715 + RSINE1 SINE B4 120 164 -1 3 1605 248 172 17 0 chr3 133805483 133805541 -25794242 + (CATATA)n Simple_repeat Simple_repeat 6 64 0 3 1605 396 138 0 0 chr3 133807224 133807289 -25792494 + (ATG)n Simple_repeat Simple_repeat 2 66 0 3 1605 588 315 34 0 chr3 133807294 133807440 -25792343 + RSINE1 SINE B4 8 158 -7 3 1605 667 233 12 6 chr3 133807516 133807680 -25792103 - HAL1-2a_MD LINE L1 -517 2507 2343 3 1605 186 103 0 0 chr3 133807690 133807719 -25792064 + (ATGGTG)n Simple_repeat Simple_repeat 6 34 0 3 1605 540 0 0 0 chr3 133809986 133810046 -25789737 + (CTG)n Simple_repeat Simple_repeat 1 60 0 3 1605 202 322 0 84 chr3 133810773 133810868 -25788915 + MIR SINE MIR 175 261 -1 3 1605 508 262 19 0 chr3 133811061 133811168 -25788615 + RSINE1 SINE B4 23 131 -34 3 1605 5232 109 18 1 chr3 133812191 133813402 -25786381 - Lx LINE L1 -319 6335 5106 3 1605 6192 113 22 6 chr3 133813396 133815166 -25784617 - L1VL4 LINE L1 -1738 1821 21 3 1605 278 319 59 55 chr3 133815287 133815506 -25784277 + HAL1 LINE L1 1579 1798 -709 3 1605 22 0 0 0 chr3 133815688 133815710 -25784073 + AT_rich Low_complexity Low_complexity 1 22 0 3 1605 28 71 0 0 chr3 133816396 133816452 -25783331 + AT_rich Low_complexity Low_complexity 1 56 0 3 1605 426 322 116 29 chr3 133816625 133816900 -25782883 + ORR1E LTR MaLR 41 339 -20 3 1605 1236 281 120 24 chr3 133816988 133817065 -25782718 - L1MA6 LINE L1 -144 7177 7101 3 1605 7136 41 1 1 chr3 133817065 133817936 -25781847 + L1Md_F3 LINE L1 5713 6583 -1 3 1605 1236 281 120 24 chr3 133817936 133818624 -25781159 - L1MA6 LINE L1 -221 7100 6338 3 1605 1232 266 101 14 chr3 133818660 133819286 -25780497 - L1MA6 LINE L1 -1402 5762 5083 3 1605 1186 154 40 0 chr3 133819287 133819488 -25780295 - URR1B DNA MER1_type 0 225 17 3 1605 1155 181 46 95 chr3 133819624 133819929 -25779854 - Lx9 LINE L1 -431 7213 6924 3 1605 1434 302 116 50 chr3 133819941 133820778 -25779005 - L1MA6 LINE L1 -2227 4937 4037 3 1605 2214 114 23 12 chr3 133820778 133821123 -25778660 - Lx3A LINE L1 0 6981 6633 3 1605 1434 302 116 50 chr3 133821123 133821197 -25778586 - L1MA6 LINE L1 -3128 4036 3985 3 1605 351 0 0 0 chr3 133821197 133821236 -25778547 + (TAGA)n Simple_repeat Simple_repeat 4 42 0 3 1605 1434 294 125 43 chr3 133821236 133822045 -25777738 - L1MA6 LINE L1 -3180 3984 3102 3 1605 229 245 0 18 chr3 133822110 133822177 -25777606 + Lx9 LINE L1 7105 7159 -485 3 1605 283 309 117 0 chr3 133822231 133822393 -25777390 - L1MA6 LINE L1 -4258 2910 2730 3 1605 210 143 0 0 chr3 133822393 133822442 -25777341 + (GTTTG)n Simple_repeat Simple_repeat 2 50 0 3 1605 318 338 35 69 chr3 133822500 133822789 -25776994 - L1MA6 LINE L1 -4488 2680 2402 3 1605 324 209 0 0 chr3 133822993 133823079 -25776704 + (CATA)n Simple_repeat Simple_repeat 3 88 0 3 1605 367 234 172 0 chr3 133823086 133823280 -25776503 - L1MA6 LINE L1 -4894 2274 2027 3 1605 278 127 0 18 chr3 133823282 133823333 -25776450 + (TTTC)n Simple_repeat Simple_repeat 3 52 0 3 1605 958 100 50 0 chr3 133823333 133823473 -25776310 - B1_Mus1 SINE Alu 0 148 2 3 1606 2031 127 33 31 chr3 133825220 133825579 -25774204 - Lx LINE L1 -9 6645 6286 3 1606 839 296 0 23 chr3 133826882 133827103 -25772680 + B4A SINE B4 17 232 -60 3 1606 585 358 46 5 chr3 133827104 133827298 -25772485 + B3 SINE B2 3 204 -12 3 1606 352 215 0 0 chr3 133827476 133827541 -25772242 + B3 SINE B2 66 130 -86 3 1606 6148 39 11 0 chr3 133828294 133829036 -25770747 + L1Md_T LINE L1 5833 6582 0 3 1606 297 306 9 53 chr3 133829116 133829165 -25770618 + ID_B1 SINE B4 116 164 -60 3 1606 1601 213 57 0 chr3 133829165 133829517 -25770266 + ORR1D1 LTR MaLR 1 372 -2 3 1606 297 306 9 53 chr3 133829517 133829581 -25770202 + ID_B1 SINE B4 165 224 0 3 1606 2665 75 5 21 chr3 133829703 133830082 -25769701 - L1_Mus3 LINE L1 -5 6633 6261 3 1606 242 297 35 83 chr3 133830552 133830721 -25769062 - MER5A1 DNA MER1_type -2 164 4 4 1606 491 79 0 0 chr3 133831251 133831327 -25768456 - L1_Mus3 LINE L1 -2 6636 6561 4 1606 242 209 72 21 chr3 133831327 133831420 -25768363 - PB1 SINE Alu -11 109 10 4 1606 228 288 87 63 chr3 133831430 133831556 -25768227 + MIR SINE MIR 43 171 -91 4 1606 2116 162 5 65 chr3 133831558 133831960 -25767823 - ORR1C1 LTR MaLR 0 378 1 4 1606 231 373 16 170 chr3 133833142 133833336 -25766447 - LTR33A_ LTR ERVL -284 247 84 4 1606 232 318 70 12 chr3 133833723 133833871 -25765912 - MIRb SINE MIR -87 181 19 4 1606 234 119 88 10 chr3 133834166 133834268 -25765515 + (TAGA)n Simple_repeat Simple_repeat 1 110 0 4 1606 781 122 37 0 chr3 133834297 133834461 -25765322 + (TAGA)n Simple_repeat Simple_repeat 3 172 0 4 1606 189 74 0 0 chr3 133834762 133834789 -25764994 + (TTTTTA)n Simple_repeat Simple_repeat 2 28 0 4 1606 486 0 0 0 chr3 133835149 133835203 -25764580 + (TC)n Simple_repeat Simple_repeat 1 54 0 4 1606 32 67 0 0 chr3 133835215 133835275 -25764508 + AT_rich Low_complexity Low_complexity 1 60 0 4 1606 1614 210 66 22 chr3 133835888 133836253 -25763530 + MTD LTR MaLR 12 392 -27 4 1606 224 367 24 24 chr3 133836743 133836866 -25762917 + L3 LINE CR1 3503 3625 -864 4 1606 3165 126 20 18 chr3 133837279 133837790 -25761993 + Lx2 LINE L1 6486 6997 0 4 1606 24 0 0 0 chr3 133838450 133838474 -25761309 + AT_rich Low_complexity Low_complexity 1 24 0 4 1606 489 17 0 0 chr3 133838912 133838970 -25760813 + (CA)n Simple_repeat Simple_repeat 2 59 0 4 1606 1106 174 142 11 chr3 133839026 133839353 -25760430 + Lx2B LINE L1 6606 6986 -11 4 1606 23 33 0 0 chr3 133839528 133839558 -25760225 + AT_rich Low_complexity Low_complexity 1 30 0 4 1606 582 305 76 15 chr3 133839687 133840017 -25759766 - L1MA5 LINE L1 -297 6003 5654 4 1606 378 294 100 8 chr3 133840029 133840149 -25759634 + B1F SINE Alu 10 140 -9 4 1606 453 296 79 26 chr3 133840348 133840688 -25759095 - L1MA5 LINE L1 -755 5388 5031 4 1606 327 335 62 12 chr3 133841119 133841279 -25758504 + MIR SINE MIR 34 201 -61 4 1606 671 274 37 37 chr3 133842542 133842743 -25757040 + B3A SINE B2 8 216 0 4 1606 413 277 164 72 chr3 133843165 133843357 -25756426 + B3A SINE B2 8 203 -13 4 1606 527 126 21 21 chr3 133844502 133844599 -25755184 - ORR1B1 LTR MaLR -257 137 41 4 1606 480 111 0 0 chr3 133844642 133844714 -25755069 + (TTCTC)n Simple_repeat Simple_repeat 4 75 0 4 1606 478 315 101 22 chr3 133846320 133846430 -25753353 + L2a LINE L2 3114 3228 -198 4 1606 335 21 0 0 chr3 133846430 133846478 -25753305 - L1Md_T LINE L1 0 6582 6535 4 1606 478 315 101 22 chr3 133846478 133846643 -25753140 + L2a LINE L2 3229 3411 -15 4 1606 303 263 31 10 chr3 133846891 133846987 -25752796 - PB1D10 SINE Alu -18 99 2 4 1606 551 266 87 6 chr3 133847151 133847350 -25752433 + MLT1G3-int LTR MaLR 1194 1485 -4 4 1606 233 339 186 0 chr3 133847373 133847497 -25752286 + MLT1G3 LTR MaLR 9 155 -440 4 1606 374 266 71 127 chr3 133847714 133848036 -25751747 - ORR1E LTR MaLR -3 376 36 4 1606 368 252 108 23 chr3 133848286 133848416 -25751367 - MLT1A1 LTR MaLR -3 405 265 4 1606 423 0 31 31 chr3 133849217 133849281 -25750502 + (TTTTG)n Simple_repeat Simple_repeat 2 65 0 4 1606 1603 251 59 22 chr3 133850318 133850722 -25749061 + MTD LTR MaLR 1 419 0 4 1606 386 268 12 0 chr3 133850765 133850847 -25748936 + B3 SINE B2 48 130 -86 4 1606 208 376 53 11 chr3 133851003 133851097 -25748686 - L3 LINE CR1 -896 3593 3496 4 1606 414 0 0 0 chr3 133852132 133852178 -25747605 + (TC)n Simple_repeat Simple_repeat 1 46 0 4 1606 360 0 0 0 chr3 133852180 133852220 -25747563 + (CA)n Simple_repeat Simple_repeat 2 41 0 4 1606 374 0 65 16 chr3 133852905 133852967 -25746816 + (TTTTG)n Simple_repeat Simple_repeat 2 66 0 4 1606 1251 108 16 0 chr3 133854252 133854437 -25745346 - B2_Mm1t SINE B2 -4 189 2 4 1606 22 0 0 0 chr3 133854445 133854467 -25745316 + AT_rich Low_complexity Low_complexity 1 22 0 4 1606 584 289 135 15 chr3 133854481 133854808 -25744975 - Lx8 LINE L1 -30 7443 7078 4 1606 297 68 0 0 chr3 133855516 133855560 -25744223 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 4 1606 308 306 100 19 chr3 133855899 133856059 -25743724 + MIRc SINE MIR 80 252 -16 4 1606 231 211 117 13 chr3 133856492 133856569 -25743214 + L1M6 LINE L1 1698 1782 -4714 4 1606 235 298 18 0 chr3 133856600 133856657 -25743126 + ID4 SINE ID 1 58 -25 4 1606 324 0 0 0 chr3 133856807 133856843 -25742940 + (TA)n Simple_repeat Simple_repeat 2 37 0 4 1606 414 0 0 0 chr3 133857573 133857619 -25742164 + (TTTG)n Simple_repeat Simple_repeat 3 48 0 4 1606 507 296 108 58 chr3 133857850 133858108 -25741675 - Tigger13a DNA MER2_type -357 414 144 4 1606 203 179 0 0 chr3 133858678 133858717 -25741066 + T-rich Low_complexity Low_complexity 1 39 0 4 1606 1136 74 0 20 chr3 133858718 133858869 -25740914 - B1_Mus1 SINE Alu 0 148 1 4 1606 1363 104 0 5 chr3 133859906 133860099 -25739684 + B2_Mm2 SINE B2 2 193 -2 4 1606 335 314 87 62 chr3 133860315 133860590 -25739193 + B4A SINE B4 3 284 -8 4 1606 21 0 0 0 chr3 133860663 133860684 -25739099 + AT_rich Low_complexity Low_complexity 1 21 0 4 1606 24 67 0 0 chr3 133861049 133861094 -25738689 + AT_rich Low_complexity Low_complexity 1 45 0 4 1606 359 311 40 13 chr3 133861317 133861467 -25738316 - Lx8 LINE L1 -130 7343 7190 4 1606 267 31 0 0 chr3 133861841 133861873 -25737910 + (TAA)n Simple_repeat Simple_repeat 3 34 0 4 1606 1075 75 13 27 chr3 133861996 133862146 -25737637 - B1_Mur4 SINE Alu -1 149 2 4 1606 186 43 0 0 chr3 133862453 133862476 -25737307 + (GAAAA)n Simple_repeat Simple_repeat 2 24 0 4 1606 6760 52 16 2 chr3 133866296 133867194 -25732589 - L1Md_F2 LINE L1 -1 6581 5672 4 1606 2963 61 0 8 chr3 133867182 133867578 -25732205 + L1Md_F2 LINE L1 5291 5683 -200 4 1606 2482 161 155 29 chr3 133867635 133868248 -25731535 - RMER6C LTR ERVK 0 690 1 4 1606 201 377 42 35 chr3 133870383 133870526 -25729257 + MIRb SINE MIR 24 167 -101 4 1606 1052 80 13 0 chr3 133870778 133870929 -25728854 + (CATATA)n Simple_repeat Simple_repeat 4 156 0 4 1606 1200 48 7 0 chr3 133872590 133872737 -25727046 - B1_Mus1 SINE Alu 0 148 1 4 1606 273 275 29 14 chr3 133873028 133873098 -25726685 + B1F SINE Alu 70 140 -9 4 1606 689 53 0 11 chr3 133873101 133873196 -25726587 + (GAAA)n Simple_repeat Simple_repeat 2 95 0 4 1606 738 141 0 0 chr3 133873902 133874030 -25725753 + (TG)n Simple_repeat Simple_repeat 2 129 0 4 1606 432 0 0 0 chr3 133875579 133875627 -25724156 + (TC)n Simple_repeat Simple_repeat 1 48 0 4 1606 198 0 0 0 chr3 133875630 133875652 -25724131 + (CA)n Simple_repeat Simple_repeat 1 22 0 4 1606 775 333 24 12 chr3 133876284 133876539 -25723244 + B4 SINE B4 15 272 -20 4 1606 8705 89 42 10 chr3 133876882 133878234 -25721549 + Lx3_Mus LINE L1 5614 7009 0 4 1606 836 46 0 9 chr3 133879183 133879293 -25720490 + (TTCC)n Simple_repeat Simple_repeat 4 112 0 4 1606 360 0 0 0 chr3 133879293 133879333 -25720450 + (TC)n Simple_repeat Simple_repeat 2 41 0 4 1606 829 170 205 0 chr3 133879344 133879515 -25720268 - B3 SINE B2 -1 215 10 4 1606 21 71 0 0 chr3 133882536 133882578 -25717205 + AT_rich Low_complexity Low_complexity 1 42 0 4 1606 437 310 115 35 chr3 133882619 133882793 -25716990 - MLT2B1 LTR ERVL 0 567 380 4 1606 2224 92 16 0 chr3 133882840 133883154 -25716629 - ORR1A2 LTR MaLR -8 319 1 4 1606 479 306 96 40 chr3 133883154 133883371 -25716412 - MLT2B1 LTR ERVL -314 240 1 4 1606 231 318 249 17 chr3 133883376 133883673 -25716110 - L2 LINE L2 -838 2581 2216 4 1606 419 342 162 46 chr3 133884603 133885344 -25714439 - L2 LINE L2 -2431 988 162 4 1606 423 0 0 0 chr3 133886412 133886459 -25713324 + (TG)n Simple_repeat Simple_repeat 1 47 0 4 1606 6550 53 1 2 chr3 133887565 133888417 -25711366 - L1Md_F2 LINE L1 0 6582 5732 4 1606 4412 55 2 0 chr3 133888417 133888999 -25710784 + L1Md_F2 LINE L1 4987 5569 -314 4 1606 389 344 132 57 chr3 133889161 133889639 -25710144 + MLT1L LTR MaLR 2 515 -95 4 1606 1282 25 6 0 chr3 133889863 133890022 -25709761 - L1_Mus1 LINE L1 -633 5934 5775 4 1606 4522 72 17 7 chr3 133890022 133890621 -25709162 + L1_Mus1 LINE L1 5963 6567 0 4 1606 276 176 0 0 chr3 133890694 133890762 -25709021 + T-rich Low_complexity Low_complexity 1 68 0 4 1606 1170 81 0 0 chr3 133890765 133890913 -25708870 - B1_Mus1 SINE Alu 0 148 1 4 1606 236 228 104 82 chr3 133892105 133892239 -25707544 - MIR SINE MIR -40 222 86 4 1606 10402 60 30 3 chr3 133893000 133894438 -25705345 + L1Md_F2 LINE L1 4109 5585 -298 4 1606 8314 32 4 4 chr3 133894439 133895433 -25704350 + L1Md_F2 LINE L1 5587 6580 -2 4 1606 465 19 0 0 chr3 133895441 133895495 -25704288 + (GAAA)n Simple_repeat Simple_repeat 3 56 0 4 1606 244 241 57 102 chr3 133897222 133897310 -25702473 + MIRb SINE MIR 180 263 -5 4 1606 346 295 105 0 chr3 133897348 133897453 -25702330 + PB1D10 SINE Alu 1 116 -1 4 1606 494 305 0 21 chr3 133898070 133898214 -25701569 + B1F SINE Alu 1 141 -8 4 1606 285 29 0 0 chr3 133899050 133899084 -25700699 + (A)n Simple_repeat Simple_repeat 1 34 0 4 1606 211 200 0 58 chr3 133899262 133899331 -25700452 + C-rich Low_complexity Low_complexity 6 70 0 4 1606 417 54 0 0 chr3 133899371 133899427 -25700356 + (GA)n Simple_repeat Simple_repeat 1 56 0 4 1606 207 296 0 30 chr3 133899519 133899620 -25700163 + C-rich Low_complexity Low_complexity 4 101 0 4 1606 223 250 0 15 chr3 133899553 133899618 -25700165 + CT-rich Low_complexity Low_complexity 2 65 0 4 1606 432 0 0 0 chr3 133901509 133901557 -25698226 + (CCTA)n Simple_repeat Simple_repeat 4 51 0 4 1606 22 0 0 0 chr3 133902307 133902329 -25697454 + AT_rich Low_complexity Low_complexity 1 22 0 4 1606 334 245 118 129 chr3 133902476 133902654 -25697129 + L1MDb LINE L1 581 756 -5653 4 1606 183 42 0 0 chr3 133902844 133902868 -25696915 + (CCG)n Simple_repeat Simple_repeat 3 26 0 4 1606 222 160 0 0 chr3 133902935 133902985 -25696798 + (CGG)n Simple_repeat Simple_repeat 2 51 0 4 1606 217 132 0 0 chr3 133902998 133903036 -25696747 + (TCC)n Simple_repeat Simple_repeat 2 39 0 4 1606 459 78 0 0 chr3 133903054 133903118 -25696665 + (CGG)n Simple_repeat Simple_repeat 1 64 0 5 1606 315 0 0 0 chr3 133904165 133904200 -25695583 + (TG)n Simple_repeat Simple_repeat 2 36 0 5 1606 231 229 13 67 chr3 133907750 133907825 -25691958 - Lx4A LINE L1 -107 6951 6881 5 1606 22 56 0 0 chr3 133909837 133909873 -25689910 + AT_rich Low_complexity Low_complexity 1 36 0 5 1606 669 110 0 0 chr3 133909903 133910003 -25689780 + (TTCC)n Simple_repeat Simple_repeat 3 102 0 5 1606 27 29 0 0 chr3 133913111 133913145 -25686638 + AT_rich Low_complexity Low_complexity 1 34 0 5 1606 672 54 0 0 chr3 133913244 133913337 -25686446 + (GA)n Simple_repeat Simple_repeat 2 94 0 5 1606 633 90 0 0 chr3 133913968 133914057 -25685726 + (GA)n Simple_repeat Simple_repeat 2 90 0 5 1606 260 258 254 16 chr3 133914200 133914322 -25685461 - ID_B1 SINE B4 -1 223 73 5 1606 546 89 0 0 chr3 133915173 133915263 -25684520 + (TA)n Simple_repeat Simple_repeat 2 91 0 5 1606 263 284 147 0 chr3 133915320 133915422 -25684361 + PB1D10 SINE Alu 1 117 0 5 1606 2441 70 3 6 chr3 133917966 133918284 -25681499 - L1_Mus1 LINE L1 -2 6565 6249 5 1606 1366 100 10 5 chr3 133918332 133918533 -25681250 - L1_Mus3 LINE L1 -12 6626 6425 5 1606 219 286 0 0 chr3 133919318 133919395 -25680388 + (TG)n Simple_repeat Simple_repeat 2 78 0 5 1606 31 68 0 0 chr3 133920192 133920251 -25679532 + AT_rich Low_complexity Low_complexity 1 59 0 5 1606 24 0 0 0 chr3 133920831 133920855 -25678928 + AT_rich Low_complexity Low_complexity 1 24 0 5 1606 220 270 0 0 chr3 133921195 133921269 -25678514 + A-rich Low_complexity Low_complexity 1 74 0 5 1606 22 0 0 0 chr3 133921381 133921403 -25678380 + AT_rich Low_complexity Low_complexity 1 22 0 5 1606 213 39 0 0 chr3 133923190 133923216 -25676567 + (TCTG)n Simple_repeat Simple_repeat 2 27 0 5 1606 22 56 0 0 chr3 133923222 133923258 -25676525 + AT_rich Low_complexity Low_complexity 1 36 0 5 1606 189 0 0 0 chr3 133923464 133923485 -25676298 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 5 1606 237 191 78 11 chr3 133925170 133925260 -25674523 + (TCTA)n Simple_repeat Simple_repeat 4 99 0 5 1606 735 86 0 0 chr3 133926219 133926336 -25673447 + (TG)n Simple_repeat Simple_repeat 1 117 0 5 1606 24 32 0 0 chr3 133926500 133926531 -25673252 + AT_rich Low_complexity Low_complexity 1 31 0 5 1606 28 29 0 0 chr3 133926879 133926914 -25672869 + AT_rich Low_complexity Low_complexity 1 35 0 5 1606 393 39 0 0 chr3 133927016 133927067 -25672716 + (TG)n Simple_repeat Simple_repeat 2 52 0 5 1606 396 0 0 0 chr3 133933954 133933998 -25665785 + (TG)n Simple_repeat Simple_repeat 2 45 0 5 1606 2100 116 151 8 chr3 133934621 133935012 -25664771 - Lx3A LINE L1 -27 6954 6508 5 1606 1233 97 0 21 chr3 133935568 133935758 -25664025 - Lx3A LINE L1 -132 6849 6664 5 1606 2960 94 15 11 chr3 133935755 133936217 -25663566 + Lx3A LINE L1 6201 6664 -317 5 1606 644 0 13 0 chr3 133938158 133938234 -25661549 + (TC)n Simple_repeat Simple_repeat 2 78 0 5 1606 1145 69 0 0 chr3 133938234 133938378 -25661405 - B1_Mm SINE Alu -3 144 1 5 1606 21 36 0 0 chr3 133939868 133939896 -25659887 + AT_rich Low_complexity Low_complexity 1 28 0 5 1606 282 286 30 10 chr3 133940065 133940164 -25659619 + CT-rich Low_complexity Low_complexity 2 102 0 5 1606 802 109 26 19 chr3 133940215 133940486 -25659297 + (TCTA)n Simple_repeat Simple_repeat 1 273 0 5 1606 21 0 0 0 chr3 133942124 133942145 -25657638 + AT_rich Low_complexity Low_complexity 1 21 0 5 1606 6429 127 28 56 chr3 133942428 133943553 -25656230 + Lx3B LINE L1 5873 6966 -7 5 1606 252 0 0 0 chr3 133943553 133943581 -25656202 + (TA)n Simple_repeat Simple_repeat 2 29 0 5 1606 243 0 0 0 chr3 133943581 133943607 -25656176 + (TG)n Simple_repeat Simple_repeat 2 28 0 5 1606 24 0 0 0 chr3 133943640 133943664 -25656119 + AT_rich Low_complexity Low_complexity 1 24 0 5 1606 1530 142 187 9 chr3 133943714 133944062 -25655721 + RMER17C LTR ERVK 1 410 0 5 1606 252 253 45 112 chr3 133945816 133945905 -25653878 - PB1 SINE Alu -6 121 39 5 1606 1454 260 62 16 chr3 133946278 133946665 -25653118 + MTD LTR MaLR 1 405 -14 5 1606 1011 95 0 20 chr3 133946861 133946998 -25652785 + B1_Mus1 SINE Alu 2 138 -10 5 1606 391 18 0 35 chr3 133946998 133947056 -25652727 + (CAA)n Simple_repeat Simple_repeat 2 57 0 5 1606 1011 95 0 20 chr3 133947056 133947068 -25652715 + B1_Mus1 SINE Alu 139 148 0 5 1606 324 188 0 0 chr3 133947990 133948059 -25651724 + (TA)n Simple_repeat Simple_repeat 2 70 0 5 1606 188 333 31 47 chr3 133948737 133948866 -25650917 - L2 LINE L2 -1897 1522 1396 5 1606 24 0 0 0 chr3 133949695 133949719 -25650064 + AT_rich Low_complexity Low_complexity 1 24 0 5 1606 232 260 182 0 chr3 133949989 133950066 -25649717 - MER91A DNA Tip100 0 196 106 5 1606 261 173 19 0 chr3 133950292 133950344 -25649439 - MIRc SINE MIR -147 121 69 5 1606 335 89 18 0 chr3 133950614 133950670 -25649113 + (TC)n Simple_repeat Simple_repeat 1 57 0 5 1606 269 304 71 0 chr3 133950763 133950875 -25648908 - L1MA6 LINE L1 -48 6243 6124 5 1606 368 377 6 59 chr3 133950882 133951051 -25648732 + RSINE1 SINE B4 4 163 -2 5 1606 27 0 0 0 chr3 133951100 133951127 -25648656 + AT_rich Low_complexity Low_complexity 1 27 0 5 1606 676 276 86 37 chr3 133951128 133951621 -25648162 - L1MA6 LINE L1 -187 6104 5606 5 1606 315 280 83 45 chr3 133951632 133951789 -25647994 - L1MA6 LINE L1 -762 5381 5219 5 1606 21 0 0 0 chr3 133951828 133951849 -25647934 + AT_rich Low_complexity Low_complexity 1 21 0 5 1606 29 47 0 0 chr3 133951954 133951997 -25647786 + AT_rich Low_complexity Low_complexity 1 43 0 5 1606 252 0 0 0 chr3 133953002 133953030 -25646753 + (TG)n Simple_repeat Simple_repeat 1 28 0 5 1606 504 0 0 0 chr3 133953030 133953085 -25646698 + (GA)n Simple_repeat Simple_repeat 1 56 0 5 1606 1455 187 24 39 chr3 133953634 133953951 -25645832 + ORR1C2 LTR MaLR 56 372 -12 5 1606 410 354 18 30 chr3 133954259 133954425 -25645358 + RSINE1 SINE B4 2 165 0 5 1606 4513 117 50 29 chr3 133954440 133954601 -25645182 + RMER17D2 LTR ERVK 1 162 -647 5 1606 399 41 0 0 chr3 133954601 133954650 -25645133 + (CA)n Simple_repeat Simple_repeat 2 50 0 5 1606 4513 117 50 29 chr3 133954650 133955280 -25644503 + RMER17D2 LTR ERVK 163 808 -1 5 1606 897 262 69 0 chr3 133955322 133955524 -25644259 + ID_B1 SINE B4 2 217 -7 5 1607 2900 157 7 7 chr3 133956096 133956647 -25643136 - L1_Mur2 LINE L1 -861 5016 4466 5 1607 1246 186 24 36 chr3 133956647 133956977 -25642806 + L1_Mur2 LINE L1 4982 5307 -570 5 1607 1998 231 48 24 chr3 133956972 133957509 -25642274 + Lx5 LINE L1 6495 7044 -6 5 1607 301 343 46 59 chr3 133957824 133957976 -25641807 - RSINE1 SINE B4 0 165 16 5 1607 182 91 30 0 chr3 133958174 133958207 -25641576 + (TTTC)n Simple_repeat Simple_repeat 3 36 0 5 1607 405 0 0 0 chr3 133959176 133959221 -25640562 + (TC)n Simple_repeat Simple_repeat 1 45 0 5 1607 4012 78 62 5 chr3 133959869 133960450 -25639333 - Lx3_Mus LINE L1 0 7009 6396 5 1607 331 247 0 0 chr3 133960450 133960543 -25639240 - L1_Mur1 LINE L1 -6669 313 221 5 1607 28 29 0 0 chr3 133961112 133961147 -25638636 + AT_rich Low_complexity Low_complexity 1 35 0 5 1607 389 331 41 51 chr3 133961641 133961838 -25637945 + LTR33A_ LTR ERVL 18 212 -319 5 1607 848 181 0 6 chr3 133962935 133963107 -25636676 + (TA)n Simple_repeat Simple_repeat 1 171 0 5 1607 571 268 39 19 chr3 133963311 133963467 -25636316 + B3A SINE B2 3 161 -37 5 1607 249 83 0 0 chr3 133963470 133963506 -25636277 + (CA)n Simple_repeat Simple_repeat 1 36 0 5 1607 318 304 0 0 chr3 133963522 133963591 -25636192 + RSINE1 SINE B4 8 76 -89 5 1607 354 127 0 0 chr3 133964357 133964428 -25635355 + (TA)n Simple_repeat Simple_repeat 1 71 0 5 1607 468 0 0 0 chr3 133967072 133967124 -25632659 + (GA)n Simple_repeat Simple_repeat 1 52 0 5 1607 477 97 0 0 chr3 133967495 133967567 -25632216 + (TG)n Simple_repeat Simple_repeat 2 73 0 5 1607 473 283 171 16 chr3 133971617 133971804 -25627979 - B3 SINE B2 0 216 1 5 1607 474 18 0 0 chr3 133971945 133972000 -25627783 + (TTTTA)n Simple_repeat Simple_repeat 3 57 0 5 1607 319 353 121 8 chr3 133972945 133973185 -25626598 - MIRb SINE MIR 0 268 2 5 1607 354 286 29 68 chr3 133973780 133973946 -25625837 + MIR SINE MIR 39 196 -66 5 1607 2900 87 0 0 chr3 133973953 133974356 -25625427 - L1_Mur1 LINE L1 -28 5858 5456 5 1607 1977 290 61 25 chr3 133975026 133975689 -25624094 + Lx7 LINE L1 6526 7222 -474 5 1607 2357 66 119 11 chr3 133975689 133976041 -25623742 - RLTR10 LTR ERVK 0 390 1 5 1607 1977 290 61 25 chr3 133976041 133976144 -25623639 + Lx7 LINE L1 7223 7320 -376 5 1607 503 31 0 15 chr3 133976162 133976228 -25623555 + (TTTCC)n Simple_repeat Simple_repeat 1 65 0 5 1607 1620 0 0 0 chr3 133976228 133976408 -25623375 + (TTCCC)n Simple_repeat Simple_repeat 1 180 0 5 1607 912 44 0 0 chr3 133976431 133976544 -25623239 + (TCTCCC)n Simple_repeat Simple_repeat 6 118 0 5 1607 381 372 98 36 chr3 133977213 133977662 -25622121 + L2 LINE L2 2584 3060 -359 5 1607 314 217 32 65 chr3 133977820 133977943 -25621840 + Lx8 LINE L1 7355 7473 0 5 1607 280 255 56 56 chr3 133978051 133978194 -25621589 + L2a LINE L2 3263 3387 0 5 1607 22 56 0 0 chr3 133981066 133981102 -25618681 + AT_rich Low_complexity Low_complexity 1 36 0 5 1607 22 0 0 0 chr3 133982329 133982351 -25617432 + AT_rich Low_complexity Low_complexity 1 22 0 5 1607 23 54 0 0 chr3 133984062 133984099 -25615684 + AT_rich Low_complexity Low_complexity 1 37 0 5 1607 540 296 92 7 chr3 133984534 133984827 -25614956 + L1MC2 LINE L1 4457 4774 -1372 5 1607 374 235 186 0 chr3 133984837 133984939 -25614844 + B1F SINE Alu 28 148 -1 5 1607 320 313 112 22 chr3 133984970 133985525 -25614258 + L1MC2 LINE L1 4762 5383 -763 5 1607 258 32 0 0 chr3 133985555 133985586 -25614197 + (CA)n Simple_repeat Simple_repeat 2 32 0 5 1607 242 220 229 0 chr3 133985629 133985738 -25614045 + L1MC2 LINE L1 5480 5613 -2172 5 1607 424 289 84 33 chr3 133986048 133986323 -25613460 + L1MC2 LINE L1 5989 6277 -67 5 1607 286 43 42 21 chr3 133986340 133986388 -25613395 + (CAAA)n Simple_repeat Simple_repeat 2 50 0 5 1607 604 287 181 11 chr3 133986412 133986952 -25612831 - L1MC LINE L1 -896 5250 4620 5 1607 31 26 0 0 chr3 133987243 133987281 -25612502 + AT_rich Low_complexity Low_complexity 1 38 0 5 1607 29 60 0 0 chr3 133987596 133987646 -25612137 + AT_rich Low_complexity Low_complexity 1 50 0 6 1607 1429 219 36 13 chr3 133987972 133988277 -25611506 - MTD LTR MaLR 0 419 108 6 1607 415 260 33 27 chr3 133988277 133988427 -25611356 - Lx7 LINE L1 -1715 5981 5831 6 1607 314 319 14 29 chr3 133988438 133988577 -25611206 + Lx7 LINE L1 7160 7296 -400 6 1607 1101 100 0 0 chr3 133988593 133988934 -25610849 + (TG)n Simple_repeat Simple_repeat 1 341 0 6 1607 302 276 143 0 chr3 133989076 133989181 -25610602 - MTD LTR MaLR -299 120 1 6 1607 1050 89 0 0 chr3 133989224 133989393 -25610390 + (GA)n Simple_repeat Simple_repeat 1 169 0 6 1607 1360 161 43 80 chr3 133989422 133989772 -25610011 + RMER1C Other Other 1006 1342 0 6 1607 270 0 0 0 chr3 133989900 133989930 -25609853 + (TTAA)n Simple_repeat Simple_repeat 3 32 0 6 1607 6033 99 21 19 chr3 133989930 133990829 -25608954 - Lx3A LINE L1 -8 6973 6073 6 1607 225 244 11 55 chr3 133990922 133990991 -25608792 + (TATATG)n Simple_repeat Simple_repeat 2 66 0 6 1607 1597 184 106 0 chr3 133990991 133991322 -25608461 - ORR1B2 LTR MaLR -1 366 1 6 1607 225 244 11 55 chr3 133991322 133991343 -25608440 + (TATATG)n Simple_repeat Simple_repeat 4 25 0 6 1607 1225 78 6 6 chr3 133991706 133991886 -25607897 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 6 1607 509 144 0 10 chr3 133991886 133991978 -25607805 + CT-rich Low_complexity Low_complexity 2 92 0 6 1607 1561 96 50 0 chr3 133992716 133992955 -25606828 - Lx2 LINE L1 0 6997 6747 6 1607 315 71 0 0 chr3 133993553 133993595 -25606188 + (TTTTC)n Simple_repeat Simple_repeat 3 44 0 6 1607 661 53 21 0 chr3 133993599 133993693 -25606090 + (TC)n Simple_repeat Simple_repeat 1 96 0 6 1607 585 0 0 0 chr3 133995306 133995371 -25604412 + (TCCC)n Simple_repeat Simple_repeat 4 68 0 6 1607 818 54 18 0 chr3 133995371 133995481 -25604302 + (TTTC)n Simple_repeat Simple_repeat 3 115 0 6 1607 250 286 18 0 chr3 133995485 133995541 -25604242 - ID4 SINE ID -10 73 17 6 1607 546 330 64 55 chr3 133995571 133995879 -25603904 + B4 SINE B4 2 292 0 6 1607 2620 154 79 47 chr3 133995925 133996505 -25603278 - RMER6A LTR ERVK -49 707 109 6 1607 486 75 0 0 chr3 133996518 133996585 -25603198 + (CA)n Simple_repeat Simple_repeat 2 68 0 6 1607 1145 75 0 13 chr3 133997403 133997552 -25602231 + B1_Mus1 SINE Alu 1 147 -1 6 1607 7006 101 25 3 chr3 133998055 133998842 -25600941 + Lx LINE L1 5541 6341 -313 6 1607 243 0 0 0 chr3 133998842 133998869 -25600914 + (C)n Simple_repeat Simple_repeat 1 27 0 6 1607 7006 97 24 3 chr3 133998869 133999169 -25600614 + Lx LINE L1 6342 6649 -5 6 1607 2434 239 18 28 chr3 134000288 134000834 -25598949 + Lx6 LINE L1 6744 7284 -176 1 1607 252 86 0 0 chr3 134000852 134000887 -25598896 + (TGAA)n Simple_repeat Simple_repeat 3 37 0 2 1607 252 246 14 58 chr3 134001026 134001164 -25598619 + T-rich Low_complexity Low_complexity 1 132 0 3 1607 30 59 0 0 chr3 134001276 134001327 -25598456 + AT_rich Low_complexity Low_complexity 1 51 0 4 1607 261 218 0 83 chr3 134001490 134001550 -25598233 + ID4 SINE ID 16 70 -13 5 1607 349 218 66 44 chr3 134002048 134002139 -25597644 + ORR1E LTR MaLR 99 191 -168 6 1607 586 254 44 84 chr3 134002592 134002841 -25596942 + ORR1D2 LTR MaLR 132 370 0 7 1607 270 301 11 54 chr3 134003197 134003383 -25596400 + L1M5 LINE L1 5123 5300 -846 8 1607 31 0 0 0 chr3 134003843 134003874 -25595909 + AT_rich Low_complexity Low_complexity 1 31 0 9 1607 340 318 84 84 chr3 134004050 134004393 -25595390 + MLT1A LTR MaLR 3 345 -29 1 1607 1560 200 35 113 chr3 134004549 134005000 -25594783 - RMER1C Other Other -1 1341 926 1 1607 456 19 0 0 chr3 134005049 134005102 -25594681 + (CA)n Simple_repeat Simple_repeat 2 54 0 1 1607 231 36 0 0 chr3 134005892 134005920 -25593863 + (TG)n Simple_repeat Simple_repeat 1 28 0 1 1607 1286 61 28 6 chr3 134006077 134006259 -25593524 - L1_Mus2 LINE L1 0 6566 6381 1 1607 397 326 37 15 chr3 134006687 134006821 -25592962 - ID_B1 SINE B4 -4 220 84 1 1607 706 255 14 63 chr3 134006851 134006884 -25592899 - B3 SINE B2 -4 212 179 1 1607 330 115 0 0 chr3 134006884 134006936 -25592847 + (TG)n Simple_repeat Simple_repeat 1 52 0 1 1607 706 255 14 63 chr3 134006936 134007124 -25592659 - B3 SINE B2 -38 178 2 1 1607 216 0 0 0 chr3 134007148 134007172 -25592611 + (T)n Simple_repeat Simple_repeat 1 24 0 1 1607 268 32 44 73 chr3 134008019 134008087 -25591696 + (CAAAA)n Simple_repeat Simple_repeat 2 67 0 1 1607 250 235 0 0 chr3 134008574 134008625 -25591158 + CT-rich Low_complexity Low_complexity 3 53 0 2 1607 3991 154 53 19 chr3 134009637 134010371 -25589412 + Lx4A LINE L1 6299 7057 -1 2 1607 207 0 0 0 chr3 134011141 134011164 -25588619 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2 1607 261 0 0 0 chr3 134011284 134011313 -25588470 + (TG)n Simple_repeat Simple_repeat 2 30 0 2 1607 1903 154 78 6 chr3 134011407 134011741 -25588042 + ORR1B2 LTR MaLR 2 359 -8 2 1607 398 364 25 18 chr3 134012009 134012294 -25587489 - L1MA7 LINE L1 -466 5825 5539 2 1607 291 320 0 161 chr3 134013050 134013199 -25586584 + RSINE1 SINE B4 41 165 0 2 1607 387 182 0 0 chr3 134013199 134013276 -25586507 + (CA)n Simple_repeat Simple_repeat 1 77 0 2 1607 21 0 0 0 chr3 134014345 134014366 -25585417 + AT_rich Low_complexity Low_complexity 1 21 0 2 1607 1815 127 32 74 chr3 134016632 134016971 -25582812 + ORR1A4 LTR MaLR 1 325 -4 2 1607 378 256 11 11 chr3 134017196 134017287 -25582496 - Charlie5 DNA MER1_type -1 2623 2533 3 1607 928 246 110 85 chr3 134017309 134017745 -25582038 + Lx9 LINE L1 759 1205 -6403 3 1607 1005 180 20 50 chr3 134017745 134017944 -25581839 - ORR1C2 LTR MaLR 0 384 192 3 1607 513 0 0 0 chr3 134017944 134018001 -25581782 + (GA)n Simple_repeat Simple_repeat 1 57 0 3 1607 2191 250 83 15 chr3 134018001 134018819 -25580964 + Lx9 LINE L1 5112 6028 -1616 3 1607 243 262 137 24 chr3 134019570 134019738 -25580045 - L1M5 LINE L1 -979 5167 4981 3 1607 2210 91 0 44 chr3 134019777 134020121 -25579662 - L1_Mus1 LINE L1 0 6567 6239 3 1607 380 303 128 37 chr3 134020143 134020255 -25579528 - L1M5 LINE L1 -1347 4799 4671 3 1607 2793 12 3 0 chr3 134020255 134020576 -25579207 + RLTRETN_Mm LTR ERVK 1 322 0 3 1607 380 303 128 37 chr3 134020576 134020816 -25578967 - L1M5 LINE L1 -1476 4670 4415 3 1607 460 344 47 12 chr3 134020913 134021153 -25578630 + MLT1F2 LTR MaLR 305 554 -15 3 1607 452 283 53 85 chr3 134021294 134021576 -25578207 - Charlie5 DNA MER1_type -2344 280 8 3 1607 288 0 0 0 chr3 134021809 134021841 -25577942 + (A)n Simple_repeat Simple_repeat 1 32 0 3 1607 6025 88 12 1 chr3 134022286 134023788 -25575995 + L1VL2 LINE L1 306 1826 -1789 3 1607 272 271 43 0 chr3 134023932 134024002 -25575781 - PB1D10 SINE Alu -2 115 43 4 1607 25 65 0 0 chr3 134024850 134024896 -25574887 + AT_rich Low_complexity Low_complexity 1 46 0 4 1607 22 0 0 0 chr3 134025088 134025110 -25574673 + AT_rich Low_complexity Low_complexity 1 22 0 4 1607 22 0 0 0 chr3 134025186 134025208 -25574575 + AT_rich Low_complexity Low_complexity 1 22 0 4 1607 595 284 8 0 chr3 134027182 134027316 -25572467 + RSINE1 SINE B4 2 136 -29 4 1607 274 207 103 0 chr3 134028242 134028358 -25571425 + Lx7 LINE L1 7447 7574 -122 4 1607 637 179 15 0 chr3 134029099 134029233 -25570550 + Lx7 LINE L1 7561 7696 0 4 1607 578 122 0 9 chr3 134029497 134029605 -25570178 + (CA)n Simple_repeat Simple_repeat 1 107 0 4 1607 588 261 125 0 chr3 134030617 134030793 -25568990 + Lx6 LINE L1 7195 7392 -68 4 1607 839 121 7 0 chr3 134030905 134031045 -25568738 + (TCCC)n Simple_repeat Simple_repeat 4 144 0 4 1607 369 215 36 48 chr3 134031062 134031145 -25568638 - ID4_ SINE ID -1 82 1 4 1607 21 71 0 0 chr3 134031256 134031298 -25568485 + AT_rich Low_complexity Low_complexity 1 42 0 5 1607 650 331 104 35 chr3 134032138 134032454 -25567329 + LTR16A LTR ERVL 6 343 -108 5 1607 544 373 36 25 chr3 134033225 134033703 -25566080 - Kanga11a DNA Tc2 -457 513 31 5 1607 3734 98 24 9 chr3 134034765 134035309 -25564474 - Lx3_Mus LINE L1 0 7009 6458 5 1607 732 71 0 0 chr3 134035327 134035425 -25564358 + Lx3_Mus LINE L1 5923 6020 -989 5 1607 26 0 0 0 chr3 134035451 134035477 -25564306 + AT_rich Low_complexity Low_complexity 1 26 0 5 1607 534 320 29 43 chr3 134035818 134036189 -25563594 - L1MA4 LINE L1 -296 6001 5640 5 1607 414 0 0 0 chr3 134037019 134037065 -25562718 + (TA)n Simple_repeat Simple_repeat 2 47 0 5 1607 279 291 94 28 chr3 134037126 134037412 -25562371 - L1MD LINE L1 -792 5567 5263 5 1607 694 269 131 89 chr3 134037615 134038120 -25561663 + L1MC3 LINE L1 7258 7783 -2 5 1607 378 0 0 0 chr3 134039636 134039678 -25560105 + (CA)n Simple_repeat Simple_repeat 1 42 0 6 1607 26 74 0 0 chr3 134040198 134040252 -25559531 + AT_rich Low_complexity Low_complexity 1 54 0 6 1607 505 268 115 5 chr3 134040369 134040418 -25559365 - B3 SINE B2 -3 213 155 6 1607 390 85 0 0 chr3 134040418 134040477 -25559306 + (TG)n Simple_repeat Simple_repeat 2 60 0 6 1607 505 268 115 5 chr3 134040477 134040618 -25559165 - B3 SINE B2 -62 154 3 6 1607 1221 193 0 0 chr3 134041016 134041239 -25558544 - URR1A DNA MER1_type -3 223 1 6 1607 268 321 152 34 chr3 134041279 134041291 -25558492 - L1MB4 LINE L1 -6165 442 431 6 1607 585 28 0 0 chr3 134041291 134041362 -25558421 + (TC)n Simple_repeat Simple_repeat 1 71 0 6 1607 268 321 152 34 chr3 134041362 134041730 -25558053 - L1MB4 LINE L1 -6177 430 17 6 1607 605 241 189 21 chr3 134041762 134041936 -25557847 + Lx9 LINE L1 7313 7513 -131 6 1607 210 37 0 0 chr3 134041936 134041963 -25557820 + (TCTG)n Simple_repeat Simple_repeat 2 28 0 6 1607 369 0 0 0 chr3 134041965 134042006 -25557777 + (CA)n Simple_repeat Simple_repeat 1 41 0 6 1607 605 241 189 21 chr3 134042006 134042108 -25557675 + Lx9 LINE L1 7514 7639 -5 6 1607 210 71 0 0 chr3 134042127 134042155 -25557628 + (TA)n Simple_repeat Simple_repeat 2 29 0 7 1607 437 355 79 0 chr3 134042533 134042722 -25557061 + Tigger5 DNA MER2_type 9 212 -2194 7 1607 287 252 86 17 chr3 134042758 134042875 -25556908 + Tigger5 DNA MER2_type 2281 2405 -1 7 1607 180 0 0 0 chr3 134043744 134043764 -25556019 + (TAGTG)n Simple_repeat Simple_repeat 3 22 0 7 1607 180 0 0 0 chr3 134044024 134044044 -25555739 + (TTTTTA)n Simple_repeat Simple_repeat 2 21 0 7 1607 656 312 124 35 chr3 134044081 134044743 -25555040 - Lx9 LINE L1 -10 7634 6914 7 1607 368 135 0 0 chr3 134044732 134044784 -25554999 + Lx9 LINE L1 6638 6689 -955 7 1607 566 131 0 0 chr3 134044784 134044868 -25554915 + MTC LTR MaLR 1 84 -337 7 1607 463 213 216 7 chr3 134044853 134044995 -25554788 + MTC LTR MaLR 225 421 0 7 1607 669 229 29 0 chr3 134044995 134045135 -25554648 + Lx9 LINE L1 6685 6828 -816 7 1607 252 193 361 0 chr3 134045139 134045222 -25554561 - L1MC3 LINE L1 -228 7557 7445 7 1607 443 203 30 8 chr3 134045240 134045374 -25554409 - Lx9 LINE L1 -1 7643 7507 7 1607 280 200 187 0 chr3 134045375 134045450 -25554333 + Lx9 LINE L1 7110 7198 -446 7 1607 243 88 0 0 chr3 134045461 134045495 -25554288 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 7 1607 968 118 20 14 chr3 134045498 134045644 -25554139 - B1_Mus1 SINE Alu -1 147 1 8 1607 291 330 75 45 chr3 134045645 134045845 -25553938 - L1MC3 LINE L1 -332 7453 7248 8 1607 2153 189 40 2 chr3 134045851 134046249 -25553534 - MTC LTR MaLR -8 413 1 8 1607 227 261 203 65 chr3 134046258 134046381 -25553402 - L1MC3 LINE L1 -547 7238 7099 8 1607 8361 39 1 1 chr3 134047512 134048995 -25550788 - L1Md_F2 LINE L1 0 6582 5100 8 1607 1021 215 36 47 chr3 134049011 134049393 -25550390 + RMER6A LTR ERVK 398 720 0 8 1607 1201 249 83 31 chr3 134049395 134049523 -25550260 + Lx6 LINE L1 7091 7231 -229 8 1607 1946 113 9 53 chr3 134049523 134049860 -25549923 - RLTRETN_Mm LTR ERVK 0 322 1 8 1607 1201 249 83 31 chr3 134049860 134050080 -25549703 + Lx6 LINE L1 7232 7457 -3 8 1607 25 51 0 0 chr3 134050131 134050170 -25549613 + AT_rich Low_complexity Low_complexity 1 39 0 8 1607 1840 77 15 8 chr3 134050393 134050656 -25549127 - L1_Mus3 LINE L1 -7 6631 6367 8 1607 556 323 15 35 chr3 134050961 134051163 -25548620 + B3A SINE B2 1 198 0 8 1607 485 323 53 141 chr3 134051201 134051428 -25548355 + ID_B1 SINE B4 10 216 -8 9 1607 683 242 87 6 chr3 134051477 134051660 -25548123 + B3A SINE B2 1 198 0 9 1607 1060 25 0 0 chr3 134051694 134051816 -25547967 + L1Md_T LINE L1 5465 5586 -297 9 1607 8377 34 1 0 chr3 134051816 134052811 -25546972 + L1Md_T LINE L1 5587 6582 0 9 1607 657 131 0 0 chr3 134053231 134053338 -25546445 + (TC)n Simple_repeat Simple_repeat 2 108 0 9 1607 207 65 65 0 chr3 134053420 134053466 -25546317 + (CAA)n Simple_repeat Simple_repeat 3 51 0 9 1607 1010 279 121 0 chr3 134053553 134053858 -25545925 + Lx7 LINE L1 6805 7146 -550 9 1607 1738 331 61 60 chr3 134053912 134054765 -25545018 + MTE-int LTR MaLR 674 1527 -53 9 1607 347 333 102 54 chr3 134054765 134055060 -25544723 + ORR1E LTR MaLR 1 309 -50 9 1607 477 0 0 0 chr3 134055111 134055164 -25544619 + (GAAA)n Simple_repeat Simple_repeat 4 56 0 9 1607 1064 30 8 0 chr3 134055165 134055297 -25544486 + (GGAAA)n Simple_repeat Simple_repeat 4 136 0 9 1607 208 229 131 0 chr3 134056242 134056303 -25543480 - L2c LINE L2 -6 3381 3313 1 1607 207 0 0 0 chr3 134056527 134056550 -25543233 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 1607 21 57 0 0 chr3 134058565 134058600 -25541183 + AT_rich Low_complexity Low_complexity 1 35 0 1 1607 24 0 0 0 chr3 134058613 134058637 -25541146 + AT_rich Low_complexity Low_complexity 1 24 0 1 1607 362 305 203 9 chr3 134058886 134059098 -25540685 + L1MB7 LINE L1 5829 6081 -103 1 1607 1842 128 10 0 chr3 134059099 134059387 -25540396 + RLTR31A_Mm LTR ERVK 3 293 -291 1 1607 279 146 0 0 chr3 134059401 134059442 -25540341 + RLTR31A_Mm LTR ERVK 544 584 0 1 1607 278 217 0 57 chr3 134059459 134059547 -25540236 + L1MB7 LINE L1 6094 6176 -8 1 1607 196 351 50 28 chr3 134060331 134060510 -25539273 - L2 LINE L2 -1811 1608 1426 1 1607 399 218 248 0 chr3 134061379 134061480 -25538303 - B3 SINE B2 -90 126 1 1 1607 249 160 20 20 chr3 134061491 134061542 -25538241 + MTE2b LTR MaLR 329 379 0 1 1607 4612 100 0 26 chr3 134061651 134062346 -25537437 + L1_Mur1 LINE L1 4658 5334 -552 1 1607 1548 140 3 100 chr3 134062346 134062638 -25537145 + Lx3A LINE L1 6699 6966 -15 1 1607 219 69 0 0 chr3 134062638 134062667 -25537116 + (TAAA)n Simple_repeat Simple_repeat 1 29 0 1 1607 1548 140 3 100 chr3 134062667 134062683 -25537100 + Lx3A LINE L1 6967 6977 -4 1 1607 321 148 36 36 chr3 134065394 134065478 -25534305 + Lx6 LINE L1 7311 7394 -66 1 1607 258 370 11 0 chr3 134065988 134066080 -25533703 + B4 SINE B4 1 93 -199 1 1607 1228 218 69 45 chr3 134066334 134066387 -25533396 + L1_Mur3 LINE L1 4320 4370 -1510 1 1607 243 0 0 0 chr3 134066387 134066414 -25533369 + (TAAAA)n Simple_repeat Simple_repeat 4 30 0 1 1607 1228 218 69 45 chr3 134066414 134066783 -25533000 + L1_Mur3 LINE L1 4371 4752 -1128 1 1607 435 38 0 0 chr3 134066788 134066841 -25532942 + (TA)n Simple_repeat Simple_repeat 1 53 0 1 1607 25 51 0 0 chr3 134066956 134066995 -25532788 + AT_rich Low_complexity Low_complexity 1 39 0 1 1607 351 236 61 9 chr3 134069895 134070012 -25529771 + L1M4c LINE L1 2345 2471 -3913 1 1607 1133 263 141 17 chr3 134070005 134070481 -25529302 + Lx9 LINE L1 7078 7612 -32 1 1607 242 256 127 8 chr3 134070533 134070667 -25529116 + L1M4c LINE L1 2468 2617 -3762 1 1607 680 293 58 35 chr3 134071275 134071533 -25528250 - L1MC1 LINE L1 -15 6318 6055 1 1607 395 269 77 18 chr3 134071684 134071904 -25527879 - L1MA5 LINE L1 0 6300 6068 1 1607 2054 184 26 21 chr3 134071906 134072290 -25527493 - ORR1B1 LTR MaLR -8 386 1 1 1607 26 64 0 0 chr3 134072711 134072758 -25527025 + AT_rich Low_complexity Low_complexity 1 47 0 1 1607 252 0 0 0 chr3 134072799 134072827 -25526956 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 1 1607 1098 52 0 0 chr3 134072827 134072962 -25526821 - B1_Mus1 SINE Alu -13 135 1 1 1607 22 0 0 0 chr3 134073876 134073898 -25525885 + AT_rich Low_complexity Low_complexity 1 22 0 1 1607 354 143 0 0 chr3 134074250 134074313 -25525470 + (TG)n Simple_repeat Simple_repeat 2 64 0 1 1607 198 118 0 0 chr3 134075447 134075481 -25524302 + (TA)n Simple_repeat Simple_repeat 2 35 0 1 1607 1067 45 22 0 chr3 134075702 134075836 -25523947 - B1_Mus1 SINE Alu -10 138 2 1 1607 954 283 44 41 chr3 134076638 134077051 -25522732 + BGLII_B LTR ERVK 1 414 -27 1 1607 203 156 0 43 chr3 134077104 134077151 -25522632 + (TATG)n Simple_repeat Simple_repeat 4 48 0 1 1607 651 325 62 36 chr3 134077168 134077443 -25522340 + B4A SINE B4 5 286 -6 1 1607 603 112 0 0 chr3 134077493 134077600 -25522183 + (GA)n Simple_repeat Simple_repeat 1 107 0 1 1607 491 283 21 28 chr3 134077610 134077752 -25522031 + B1F2 SINE Alu 1 141 -8 1 1607 314 294 97 69 chr3 134078251 134078426 -25521357 - MIRb SINE MIR -42 226 47 1 1607 944 330 49 29 chr3 134079959 134080461 -25519322 - L3b LINE CR1 -5 4503 3979 1 1607 351 0 0 0 chr3 134080493 134080532 -25519251 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 1 1607 450 0 0 0 chr3 134081787 134081837 -25517946 + (TG)n Simple_repeat Simple_repeat 1 50 0 1 1607 6030 35 1 0 chr3 134084069 134084790 -25514993 + L1Md_T LINE L1 5861 6582 0 1 1607 352 337 164 10 chr3 134084979 134085186 -25514597 + Tigger5 DNA MER2_type 21 259 -2147 1 1607 543 302 109 13 chr3 134085245 134085483 -25514300 - Lx8 LINE L1 -2 7471 7211 1 1607 585 316 96 103 chr3 134085495 134086043 -25513740 - RLTR18 LTR ERVK -4 612 72 1 1607 180 0 0 0 chr3 134086043 134086063 -25513720 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 1 1607 585 316 96 103 chr3 134086063 134086106 -25513677 - RLTR18 LTR ERVK -545 71 25 1 200 1507 294 112 16 chr3 134086118 134086753 -25513030 - Lx8 LINE L1 -284 7189 6494 1 1608 214 133 22 22 chr3 134086972 134087018 -25512765 + (CAA)n Simple_repeat Simple_repeat 2 47 0 1 1608 1446 278 34 17 chr3 134087088 134087220 -25512563 + Lx8 LINE L1 6052 6192 -1281 1 1608 411 21 0 0 chr3 134087220 134087268 -25512515 + (CA)n Simple_repeat Simple_repeat 2 49 0 1 1608 1446 278 34 17 chr3 134087268 134087552 -25512231 + Lx8 LINE L1 6193 6475 -998 1 1608 243 284 24 12 chr3 134087552 134087634 -25512149 + Tigger5 DNA MER2_type 2324 2406 0 1 1608 243 188 0 0 chr3 134087931 134087979 -25511804 + (TG)n Simple_repeat Simple_repeat 2 49 0 1 1608 243 61 0 0 chr3 134088255 134088288 -25511495 + (TCTG)n Simple_repeat Simple_repeat 2 34 0 1 1608 235 341 145 38 chr3 134088886 134089203 -25510580 - L2 LINE L2 -363 3056 2706 1 1608 2787 64 0 6 chr3 134089765 134090127 -25509656 + L1_Mus1 LINE L1 6207 6566 -1 1 1608 686 320 35 15 chr3 134090157 134090417 -25509366 + MER2 DNA MER2_type 72 336 -9 1 1608 243 381 29 22 chr3 134092486 134092623 -25507160 - L2a LINE L2 -10 3416 3279 1 1608 226 393 80 61 chr3 134093195 134093458 -25506325 - MLT1K LTR MaLR -148 447 180 1 1608 2598 73 6 22 chr3 134093551 134093916 -25505867 - L1_Mus2 LINE L1 0 6566 6208 1 1608 194 156 22 0 chr3 134093982 134094027 -25505756 + CT-rich Low_complexity Low_complexity 2 47 0 1 1608 4656 69 7 2 chr3 134094741 134095351 -25504432 - L1Md_F2 LINE L1 0 6582 5970 1 1608 5102 67 0 0 chr3 134095351 134096020 -25503763 + L1_Mm LINE L1 3967 4635 -1248 1 1608 32 26 0 0 chr3 134096020 134096059 -25503724 + AT_rich Low_complexity Low_complexity 1 39 0 1 1608 347 332 55 40 chr3 134096505 134096778 -25503005 + L1MB4 LINE L1 5837 6113 -67 1 1608 26 30 0 0 chr3 134096859 134096892 -25502891 + AT_rich Low_complexity Low_complexity 1 33 0 1 1608 8535 127 19 16 chr3 134097031 134098380 -25501403 - Lx2 LINE L1 0 6997 5645 1 1608 1299 226 96 0 chr3 134098738 134099115 -25500668 + Lx9 LINE L1 7225 7637 -7 1 1608 3987 47 0 2 chr3 134099134 134099622 -25500161 - L1Md_F2 LINE L1 -73 5810 5324 1 1608 6440 32 5 10 chr3 134099622 134100410 -25499373 + L1Md_F2 LINE L1 5799 6582 0 1 1608 34129 87 9 6 chr3 134101994 134108166 -25491617 - L1Md_F2 LINE L1 -5 6577 382 1 1608 23 97 0 0 chr3 134109336 134109408 -25490375 + AT_rich Low_complexity Low_complexity 1 72 0 1 1608 1843 192 30 16 chr3 134109770 134110135 -25489648 - ORR1C1 LTR MaLR -6 372 3 1 1608 294 200 0 0 chr3 134110285 134110345 -25489438 + T-rich Low_complexity Low_complexity 1 60 0 1 1608 261 83 0 0 chr3 134110618 134110654 -25489129 + (T)n Simple_repeat Simple_repeat 1 36 0 1 1608 5399 86 22 23 chr3 134110705 134111480 -25488303 - Lx3_Mus LINE L1 -8 7001 6228 1 1608 264 244 12 0 chr3 134111615 134111701 -25488082 - Lx5 LINE L1 0 7050 6964 1 1608 1153 185 9 0 chr3 134111699 134111921 -25487862 - L1_Mur2 LINE L1 -1183 4694 4471 1 1608 2153 156 14 0 chr3 134111929 134112295 -25487488 + Lx5 LINE L1 5655 6025 -1025 1 1608 36455 51 12 4 chr3 134112293 134117766 -25482017 + L1Md_T LINE L1 104 5586 -297 1 1608 7939 57 0 1 chr3 134117766 134118763 -25481020 + L1Md_T LINE L1 5587 6582 0 1 1608 30 27 0 0 chr3 134118763 134118800 -25480983 + AT_rich Low_complexity Low_complexity 1 37 0 1 1608 4440 226 37 40 chr3 134118800 134119848 -25479935 + Lx5 LINE L1 5998 7042 -8 1 1608 2265 39 0 7 chr3 134120525 134120808 -25478975 + L1Md_F2 LINE L1 6294 6574 -8 1 1608 206 392 0 18 chr3 134121671 134121780 -25478003 - L2b LINE L2 -364 3062 2956 1 1608 1100 231 107 8 chr3 134121941 134122203 -25477580 - ORR1C2 LTR MaLR 0 384 97 1 1608 240 130 0 80 chr3 134122195 134122245 -25477538 + ORR1C2 LTR MaLR 276 321 -57 1 1608 950 87 0 0 chr3 134122260 134122386 -25477397 - B1_Mus2 SINE Alu -21 126 1 1 1608 413 84 42 14 chr3 134122386 134122451 -25477332 + ORR1C2 LTR MaLR 314 380 -4 1 1608 3070 54 23 0 chr3 134122661 134123048 -25476735 - MTA_Mm LTR MaLR 0 396 1 1 1608 7464 70 21 72 chr3 134123048 134124205 -25475578 - MTA_Mm-int LTR MaLR 0 1098 1 1 1608 3226 51 5 0 chr3 134124205 134124599 -25475184 - MTA_Mm LTR MaLR 0 396 1 1 1608 682 309 75 11 chr3 134124631 134124899 -25474884 + MLT1A0 LTR MaLR 79 363 -2 1 1608 244 260 24 94 chr3 134125041 134125126 -25474657 - MLT1J LTR MaLR -335 177 99 1 1608 181 313 36 12 chr3 134125299 134125383 -25474400 - L2b LINE L2 -1262 2157 2072 1 1608 521 283 65 68 chr3 134125891 134126097 -25473686 + Lx8 LINE L1 7173 7364 -109 1 1608 2937 40 0 0 chr3 134126097 134126443 -25473340 - ORR1A0 LTR MaLR 0 346 1 1 1608 521 283 65 68 chr3 134126443 134126528 -25473255 + Lx8 LINE L1 7365 7463 -10 1 1608 541 302 12 25 chr3 134126607 134126770 -25473013 + RSINE1 SINE B4 2 162 -3 1 1608 303 140 0 0 chr3 134127400 134127450 -25472333 + (TG)n Simple_repeat Simple_repeat 1 50 0 1 1608 666 208 103 7 chr3 134127451 134127596 -25472187 + MTD LTR MaLR 10 168 -253 1 1608 780 310 122 40 chr3 134127603 134128003 -25471780 + Lx9 LINE L1 7003 7435 -209 1 1608 237 132 0 0 chr3 134128040 134128078 -25471705 + (TG)n Simple_repeat Simple_repeat 1 38 0 1 1608 1070 201 24 19 chr3 134128302 134128510 -25471273 + MTD LTR MaLR 196 404 -15 1 1608 30 69 0 0 chr3 134128524 134128582 -25471201 + AT_rich Low_complexity Low_complexity 1 58 0 1 1608 440 207 23 171 chr3 134130355 134130571 -25469212 + MER53 DNA hAT 5 188 -5 1 1608 310 258 155 0 chr3 134131219 134131316 -25468467 + MamRep488 DNA hAT 108 219 0 1 1608 195 100 0 0 chr3 134131503 134131533 -25468250 + (T)n Simple_repeat Simple_repeat 1 30 0 1 1608 3683 145 103 14 chr3 134131578 134132230 -25467553 + RMER19A LTR ERVK 28 737 0 1 1608 2227 284 16 19 chr3 134132240 134132876 -25466907 - Lx8 LINE L1 -519 6954 6321 1 1608 1190 286 72 40 chr3 134132851 134133703 -25466080 - Lx8 LINE L1 -1513 6183 5268 1 1608 257 332 43 0 chr3 134133893 134134080 -25465703 - L1M2 LINE L1 -1768 4375 4181 1 1608 392 279 76 96 chr3 134134080 134134191 -25465592 - B3A SINE B2 0 198 95 1 1608 4976 74 33 0 chr3 134134191 134134854 -25464929 - L1_Mus1 LINE L1 0 6567 5883 1 1608 392 279 76 96 chr3 134134854 134134940 -25464843 - B3A SINE B2 -104 94 5 1 1608 1475 292 99 16 chr3 134134943 134135834 -25463949 - L1M2 LINE L1 -1958 4185 3221 1 1608 554 157 0 0 chr3 134135924 134136007 -25463776 - B1F2 SINE Alu -25 124 42 2 1608 369 331 7 0 chr3 134136079 134136215 -25463568 - L1M2 LINE L1 -2992 3151 3015 1 1608 26 50 0 0 chr3 134136876 134136916 -25462867 + AT_rich Low_complexity Low_complexity 1 40 0 2 1608 323 294 139 29 chr3 134137003 134137248 -25462535 - L1M5 LINE L1 -405 5768 5497 2 1608 315 321 37 19 chr3 134137416 134137524 -25462259 - PB1D7 SINE Alu -1 119 10 2 1608 30 83 0 0 chr3 134137692 134137764 -25462019 + AT_rich Low_complexity Low_complexity 1 72 0 2 1608 239 309 88 0 chr3 134138662 134138730 -25461053 - ID4_ SINE ID -8 75 2 2 1608 2221 183 39 5 chr3 134138832 134139238 -25460545 + MTC LTR MaLR 1 420 -1 2 1608 26 0 0 0 chr3 134139406 134139432 -25460351 + AT_rich Low_complexity Low_complexity 1 26 0 2 1608 2967 164 72 21 chr3 134140279 134140889 -25458894 + RMER6C LTR ERVK 1 641 -49 2 1608 424 339 55 90 chr3 134140947 134141236 -25458547 + B4 SINE B4 3 281 -11 2 1608 361 325 131 23 chr3 134141543 134141893 -25457890 + L1MD1 LINE L1 5773 6160 -82 2 1608 549 24 11 23 chr3 134142473 134142560 -25457223 + L1Md_F3 LINE L1 6485 6570 -14 2 1608 792 302 118 41 chr3 134142986 134144072 -25455711 + L1M2 LINE L1 2504 3672 -2471 2 1608 296 278 50 21 chr3 134144289 134144428 -25455355 - MLT1A LTR MaLR -262 146 1 2 1608 506 330 25 25 chr3 134144650 134144849 -25454934 + RMER15 LTR ERVL 279 477 -98 2 1608 202 75 27 95 chr3 134144873 134144947 -25454836 + T-rich Low_complexity Low_complexity 3 71 0 2 1608 1218 304 98 12 chr3 134146066 134146424 -25453359 + L1_Mur2 LINE L1 3066 3440 -2703 2 1608 360 0 0 0 chr3 134146424 134146464 -25453319 + (CA)n Simple_repeat Simple_repeat 2 41 0 2 1608 351 0 0 0 chr3 134146464 134146503 -25453280 + (TG)n Simple_repeat Simple_repeat 1 39 0 2 1608 1218 306 158 15 chr3 134146503 134147240 -25452543 + L1_Mur2 LINE L1 3433 4291 -1586 2 1608 664 214 6 6 chr3 134147375 134147549 -25452234 + (TA)n Simple_repeat Simple_repeat 2 175 0 2 1608 984 271 38 17 chr3 134147631 134148080 -25451703 + L1M2 LINE L1 4531 5048 -1095 2 1608 470 123 231 13 chr3 134148080 134148153 -25451630 - RMER17A LTR ERVK -287 464 366 2 1608 969 105 12 6 chr3 134148153 134148316 -25451467 + (GGGGA)n Simple_repeat Simple_repeat 4 167 0 2 1608 470 145 192 23 chr3 134148316 134148435 -25451348 - RMER17A LTR ERVK -452 454 276 2 1608 1038 314 42 25 chr3 134148435 134149140 -25450643 + L1_Mur2 LINE L1 5053 5793 -507 2 1608 271 275 7 7 chr3 134149142 134149285 -25450498 + (TA)n Simple_repeat Simple_repeat 2 144 0 2 1608 22 56 0 0 chr3 134149441 134149477 -25450306 + AT_rich Low_complexity Low_complexity 1 36 0 2 1608 21 0 0 0 chr3 134150550 134150571 -25449212 + AT_rich Low_complexity Low_complexity 1 21 0 2 1608 853 306 137 28 chr3 134151626 134152013 -25447770 + MER57D LTR ERV1 4 432 -2 2 1608 279 194 14 14 chr3 134152802 134152875 -25446908 - Lx9 LINE L1 -80 7564 7492 2 1608 444 211 0 0 chr3 134152874 134152964 -25446819 + Lx9 LINE L1 7316 7405 -239 2 1608 1648 287 94 8 chr3 134153685 134154334 -25445449 - Lx8 LINE L1 -2 7471 6767 2 1608 927 236 61 23 chr3 134154337 134154601 -25445182 - Lx8 LINE L1 -937 6536 6263 2 1608 614 117 0 43 chr3 134154607 134154723 -25445060 - Lx2B LINE L1 -2 6998 6888 2 1608 342 276 0 33 chr3 134155323 134155443 -25444340 - Lx8 LINE L1 -52 5795 5680 2 1608 21 0 0 0 chr3 134155555 134155576 -25444207 + AT_rich Low_complexity Low_complexity 1 21 0 2 1608 313 315 73 82 chr3 134155776 134156091 -25443692 - B4 SINE B4 -2 290 2 2 1608 916 347 47 11 chr3 134156886 134157250 -25442533 + MTE2b LTR MaLR 3 379 0 2 1608 529 192 14 1 chr3 134157330 134157444 -25442339 + MTB LTR MaLR 249 374 -45 2 1608 1285 87 11 5 chr3 134158230 134158415 -25441368 - B2_Mm2 SINE B2 -9 186 1 2 1608 3038 71 32 32 chr3 134158435 134158871 -25440912 - RLTR1B LTR ERV1 -76 436 1 2 1608 4006 48 135 51 chr3 134158871 134159484 -25440299 - RLTR1B-int LTR ERV1 0 3299 2635 2 1608 13548 67 40 8 chr3 134159481 134160417 -25439366 - RLTR1B-int LTR ERV1 -1190 2109 1165 2 1608 279 0 0 0 chr3 134160417 134160448 -25439335 + (TC)n Simple_repeat Simple_repeat 1 31 0 2 1608 13548 67 40 8 chr3 134160448 134161300 -25438483 - RLTR1B-int LTR ERV1 -2135 1164 266 2 1608 725 216 140 31 chr3 134161271 134161500 -25438283 - MMERGLN-int LTR ERV1 -7178 378 125 2 1608 1565 145 7 76 chr3 134161473 134161814 -25437969 - RLTR1B-int LTR ERV1 -3019 280 1 2 1608 1095 114 0 6 chr3 134161814 134161973 -25437810 - RLTR1B LTR ERV1 0 512 355 2 1608 237 214 24 67 chr3 134162052 134162217 -25437566 + (TATAA)n Simple_repeat Simple_repeat 4 161 0 2 1608 229 274 26 17 chr3 134162236 134162351 -25437432 + (TA)n Simple_repeat Simple_repeat 2 117 0 2 1608 7568 58 17 6 chr3 134162723 134164370 -25435413 - L1Md_F2 LINE L1 0 6582 4924 2 1608 674 65 0 0 chr3 134164502 134164595 -25435188 - L1_Mus1 LINE L1 0 6567 6475 2 1608 2465 48 0 0 chr3 134164597 134164892 -25434891 + L1_Mus1 LINE L1 6137 6431 -136 2 1608 266 348 343 31 chr3 134164893 134165216 -25434567 - Lx8 LINE L1 -1 7472 7049 2 1608 322 343 19 0 chr3 134165238 134165346 -25434437 - B3 SINE B2 0 216 107 2 1608 210 365 102 9 chr3 134165520 134165628 -25434155 + RSINE1 SINE B4 43 160 -5 2 1608 303 267 29 29 chr3 134166027 134166131 -25433652 + L1MEg LINE L1 1824 1927 -4157 2 1608 327 197 44 29 chr3 134166156 134166224 -25433559 - B3 SINE B2 -140 76 8 2 1608 286 284 0 0 chr3 134166248 134166322 -25433461 - Lx8 LINE L1 -437 7036 6963 2 1608 2143 235 103 54 chr3 134166416 134167116 -25432667 - RMER1B Other Other -1 1065 178 2 1608 369 263 103 17 chr3 134167092 134167208 -25432575 + RMER1A Other Other 217 342 -688 2 1608 214 306 0 14 chr3 134168161 134168234 -25431549 + CT-rich Low_complexity Low_complexity 1 72 0 2 1608 195 42 0 0 chr3 134168525 134168549 -25431234 + (CA)n Simple_repeat Simple_repeat 2 25 0 2 1608 56 71 0 0 chr3 134168549 134168661 -25431122 + AT_rich Low_complexity Low_complexity 1 112 0 2 1608 3418 156 87 6 chr3 134168769 134169094 -25430689 + RMER6C LTR ERVK 3 352 -338 2 1608 836 99 7 0 chr3 134169094 134169245 -25430538 + (GA)n Simple_repeat Simple_repeat 2 153 0 2 1608 3418 156 87 6 chr3 134169245 134169552 -25430231 + RMER6C LTR ERVK 353 685 -5 2 1608 4510 79 18 2 chr3 134170408 134171019 -25428764 - L1_Mus1 LINE L1 0 6567 5947 2 1608 1362 30 0 0 chr3 134171011 134171179 -25428604 - L1Md_F2 LINE L1 0 6582 6415 2 1608 544 56 0 0 chr3 134171179 134171251 -25428532 + L1_Mm LINE L1 5179 5250 -633 2 1608 1654 26 0 0 chr3 134171249 134171443 -25428340 - L1_Mus1 LINE L1 -606 5961 5768 2 1608 276 30 0 0 chr3 134171493 134171526 -25428257 + (TA)n Simple_repeat Simple_repeat 1 33 0 2 1608 587 343 29 81 chr3 134172133 134172441 -25427342 - B4A SINE B4 0 292 1 2 1608 2466 173 138 63 chr3 134172636 134173365 -25426418 + RMER6C LTR ERVK 8 716 -4 2 1608 2125 73 0 7 chr3 134174715 134175004 -25424779 - L1Md_F2 LINE L1 -2 6580 6294 2 1608 470 265 0 0 chr3 134177657 134177755 -25422028 - B1_Mur2 SINE Alu -10 139 42 2 1608 395 0 0 163 chr3 134177764 134177979 -25421804 + (CTCTG)n Simple_repeat Simple_repeat 1 180 0 2 1608 315 172 0 49 chr3 134177981 134178042 -25421741 - B1_Mus2 SINE Alu -88 59 2 2 1608 648 257 23 0 chr3 134178517 134178688 -25421095 - Lx9 LINE L1 -273 7371 7197 2 1608 426 69 0 0 chr3 134180499 134180557 -25419226 + (TAGA)n Simple_repeat Simple_repeat 3 60 0 2 1608 22 0 0 0 chr3 134180638 134180660 -25419123 + AT_rich Low_complexity Low_complexity 1 22 0 2 1608 642 254 102 15 chr3 134182443 134182639 -25417144 + B3 SINE B2 4 216 0 2 1608 967 245 67 51 chr3 134182659 134183033 -25416750 + Lx9 LINE L1 7265 7644 0 2 1608 332 296 16 20 chr3 134183355 134183610 -25416173 + L1_Rod LINE L1 1433 1687 -4160 2 1608 180 125 0 0 chr3 134183636 134183668 -25416115 + (CAA)n Simple_repeat Simple_repeat 2 33 0 2 1608 834 271 35 0 chr3 134183747 134183950 -25415833 + B3 SINE B2 4 213 -3 2 1608 940 305 116 25 chr3 134183999 134184844 -25414939 + L1_Rod LINE L1 1788 2709 -3138 2 1608 32 75 0 0 chr3 134185094 134185161 -25414622 + AT_rich Low_complexity Low_complexity 1 67 0 2 1608 379 231 54 0 chr3 134185222 134185351 -25414432 + L1MA7 LINE L1 5852 5993 -319 2 1608 269 302 0 8 chr3 134185563 134185680 -25414103 + (TA)n Simple_repeat Simple_repeat 2 117 0 2 1608 423 160 0 0 chr3 134185680 134185755 -25414028 + (CAGAGA)n Simple_repeat Simple_repeat 2 76 0 2 1608 1613 169 41 18 chr3 134186866 134187209 -25412574 - L1_Mur3 LINE L1 -477 5403 5053 2 1608 7800 96 3 16 chr3 134187262 134188591 -25411192 + Lx3B LINE L1 4741 6040 -933 2 1608 3442 116 27 27 chr3 134188591 134189175 -25410608 + Lx3B LINE L1 6385 6968 -5 2 1608 30 27 0 0 chr3 134189185 134189222 -25410561 + AT_rich Low_complexity Low_complexity 1 37 0 2 1608 36 87 0 0 chr3 134189581 134189673 -25410110 + AT_rich Low_complexity Low_complexity 1 92 0 2 1608 257 253 279 51 chr3 134189926 134190318 -25409465 + Zaphod2 DNA Tip100 2110 2590 -934 2 1608 1532 260 49 73 chr3 134190332 134190963 -25408820 + L1MC2 LINE L1 5347 5962 -382 2 1608 1517 248 55 81 chr3 134191290 134191961 -25407822 + L1MA6 LINE L1 5303 5956 -344 2 1608 22 56 0 0 chr3 134192267 134192303 -25407480 + AT_rich Low_complexity Low_complexity 1 36 0 2 1608 34775 65 5 0 chr3 134192363 134196799 -25402984 - L1Md_F2 LINE L1 -7 6575 2123 2 1608 6893 23 0 0 chr3 134196799 134197596 -25402187 + L1Md_A LINE L1 5785 6581 -1 2 1608 34775 92 3 47 chr3 134197596 134199281 -25400502 - L1Md_F2 LINE L1 -3761 2122 511 2 1608 4524 55 0 0 chr3 134199796 134200362 -25399421 + L1Md_F2 LINE L1 6005 6570 -12 2 1608 4495 39 0 0 chr3 134201038 134201571 -25398212 - L1Md_F2 LINE L1 -14 6568 6036 2 1608 5586 42 5 9 chr3 134201571 134202450 -25397333 + L1Md_F2 LINE L1 5173 6040 -542 2 1608 16010 107 9 28 chr3 134202481 134205904 -25393879 + L1VL4 LINE L1 735 4098 -1785 2 1608 216 135 0 0 chr3 134205926 134205963 -25393820 + (A)n Simple_repeat Simple_repeat 1 37 0 2 1608 325 350 17 0 chr3 134205963 134206080 -25393703 - L1M4 LINE L1 -895 5251 5133 2 1608 516 101 0 0 chr3 134206400 134206489 -25393294 + (GA)n Simple_repeat Simple_repeat 2 90 0 2 1608 467 132 26 9 chr3 134207402 134207517 -25392266 + (TAGA)n Simple_repeat Simple_repeat 1 117 0 2 1608 3031 71 8 2 chr3 134207772 134208170 -25391613 - MTB LTR MaLR 0 400 1 2 1608 263 175 0 17 chr3 134208255 134208313 -25391470 + CT-rich Low_complexity Low_complexity 2 58 0 2 1608 23 33 0 0 chr3 134208558 134208588 -25391195 + AT_rich Low_complexity Low_complexity 1 30 0 2 1608 38553 4 0 0 chr3 134208735 134214123 -25385660 + L1Md_A LINE L1 198 5586 -297 2 1608 9004 3 0 0 chr3 134214123 134215118 -25384665 + L1Md_A LINE L1 5587 6581 -1 2 1608 2683 151 6 21 chr3 134215245 134215711 -25384072 + RMER6B LTR ERVK 1 459 -2 2 1608 24 32 0 0 chr3 134215746 134215777 -25384006 + AT_rich Low_complexity Low_complexity 1 31 0 2 1608 2956 183 42 18 chr3 134215777 134216344 -25383439 - Lx2 LINE L1 -6 6991 6411 2 1608 1901 96 8 0 chr3 134216544 134216804 -25382979 - L1_Mus2 LINE L1 -1 6565 6304 3 1608 333 210 37 0 chr3 134216967 134217048 -25382735 + Lx9 LINE L1 7554 7637 -7 3 1609 1357 78 6 0 chr3 134218032 134218212 -25381571 + B2_Mm2 SINE B2 1 181 -14 3 1609 23 86 0 0 chr3 134218731 134218789 -25380994 + AT_rich Low_complexity Low_complexity 1 58 0 3 1609 245 288 41 0 chr3 134219018 134219091 -25380692 - Lx7 LINE L1 -411 7285 7210 3 1609 273 57 0 0 chr3 134219154 134219189 -25380594 + (TTCA)n Simple_repeat Simple_repeat 4 38 0 3 1609 1953 259 13 18 chr3 134219197 134219649 -25380134 - Lx6 LINE L1 -169 7291 6842 3 1609 7988 52 2 0 chr3 134219843 134221404 -25378379 - L1Md_F2 LINE L1 -1 6581 5018 3 1609 4200 43 0 0 chr3 134221404 134221916 -25377867 + L1Md_F2 LINE L1 4523 5034 -849 3 1609 445 301 91 67 chr3 134221962 134222247 -25377536 - Lx8 LINE L1 0 7473 7182 3 1609 27 73 0 0 chr3 134222556 134222611 -25377172 + AT_rich Low_complexity Low_complexity 1 55 0 3 1609 1015 118 12 0 chr3 134224105 134224266 -25375517 + L1_Mus3 LINE L1 6473 6635 -3 3 1609 3224 196 74 7 chr3 134224844 134225218 -25374565 + Lx5 LINE L1 6189 6601 -449 3 1609 3209 38 10 0 chr3 134225218 134225613 -25374170 - L1Md_F3 LINE L1 -1 6583 6185 3 1609 3224 235 302 7 chr3 134225613 134225961 -25373822 + Lx5 LINE L1 6602 7038 -12 3 1609 21 36 0 0 chr3 134225961 134225989 -25373794 + AT_rich Low_complexity Low_complexity 1 28 0 3 1609 321 200 0 0 chr3 134226104 134226164 -25373619 + Lx9 LINE L1 7409 7468 -176 3 1609 965 136 9 0 chr3 134226170 134226398 -25373385 + (TG)n Simple_repeat Simple_repeat 1 230 0 3 1609 367 287 70 0 chr3 134227036 134227151 -25372632 + B1F2 SINE Alu 14 136 -13 3 1609 911 183 118 20 chr3 134230441 134230636 -25369147 - URR1B DNA MER1_type -4 221 8 3 1609 8147 56 0 0 chr3 134230636 134231761 -25368022 + L1_Mus1 LINE L1 5443 6567 0 3 1609 23 0 0 0 chr3 134231761 134231784 -25367999 + AT_rich Low_complexity Low_complexity 1 23 0 3 1609 3090 99 11 0 chr3 134232129 134232571 -25367212 + L1_Mus4 LINE L1 5927 6373 -263 3 1609 1256 279 32 12 chr3 134234246 134234590 -25365193 - MTEb-int LTR MaLR -1229 351 1 3 1609 1188 258 29 41 chr3 134234590 134234905 -25364878 - MTEb LTR MaLR 0 379 69 3 1609 387 0 0 0 chr3 134234936 134234979 -25364804 + (CAGA)n Simple_repeat Simple_repeat 2 44 0 3 1609 408 20 0 0 chr3 134235834 134235883 -25363900 + (TC)n Simple_repeat Simple_repeat 1 49 0 3 1609 882 276 76 54 chr3 134236152 134236466 -25363317 - Lx7 LINE L1 -300 7396 7076 3 1609 180 0 0 0 chr3 134236560 134236580 -25363203 + (T)n Simple_repeat Simple_repeat 1 20 0 3 1609 1610 56 42 0 chr3 134236708 134236921 -25362862 - ORR1A2 LTR MaLR 0 327 106 3 1609 6218 57 0 0 chr3 134236921 134237692 -25362091 + L1Md_F2 LINE L1 4816 5586 -297 3 1609 8018 51 1 0 chr3 134237692 134238675 -25361108 + L1Md_F2 LINE L1 5587 6570 -12 3 1609 904 155 7 0 chr3 134238688 134238830 -25360953 - ORR1A2 LTR MaLR -184 143 1 3 1609 466 238 184 13 chr3 134239502 134239736 -25360047 + L1MC3 LINE L1 7505 7778 -7 3 1609 4691 147 24 21 chr3 134240092 134240893 -25358890 + Lx4A LINE L1 6255 7057 -1 3 1609 27 0 0 0 chr3 134240893 134240920 -25358863 + AT_rich Low_complexity Low_complexity 1 27 0 3 1609 732 104 34 23 chr3 134241416 134241593 -25358190 + (TG)n Simple_repeat Simple_repeat 2 180 0 3 1609 812 106 35 6 chr3 134241638 134241809 -25357974 + (TG)n Simple_repeat Simple_repeat 2 177 0 3 1609 397 262 132 31 chr3 134241914 134242098 -25357685 - B4A SINE B4 -31 193 1 3 1609 252 214 14 51 chr3 134242263 134242401 -25357382 + (TTATA)n Simple_repeat Simple_repeat 5 137 0 3 1609 397 255 108 0 chr3 134243120 134243222 -25356561 + PB1D7 SINE Alu 1 113 -7 3 1609 3393 207 21 33 chr3 134243265 134244081 -25355702 + RMER1B Other Other 164 1051 -15 3 1609 3857 77 0 11 chr3 134244081 134244608 -25355175 + L1Md_F2 LINE L1 6062 6582 0 3 1609 319 239 0 15 chr3 134244695 134244763 -25355020 + PB1D7 SINE Alu 47 113 -7 3 1609 27 0 0 0 chr3 134244805 134244832 -25354951 + AT_rich Low_complexity Low_complexity 1 27 0 3 1609 526 219 197 0 chr3 134244832 134244969 -25354814 - MTD LTR MaLR -53 366 203 3 1609 413 294 9 9 chr3 134245400 134245510 -25354273 + MTE2b LTR MaLR 9 118 -261 3 1609 723 132 0 0 chr3 134245525 134245639 -25354144 - Lx5 LINE L1 -592 6458 6345 3 1609 490 262 40 0 chr3 134245684 134245810 -25353973 + MTE2b LTR MaLR 176 306 -73 3 1609 2080 334 81 56 chr3 134245859 134247041 -25352742 + MTE2b-int LTR MaLR 1 1336 -244 3 1609 2010 178 19 0 chr3 134247041 134247418 -25352365 + ORR1C2 LTR MaLR 1 384 0 3 1609 1503 294 66 9 chr3 134247418 134247595 -25352188 + MTE2b-int LTR MaLR 1206 1365 -5 3 1609 1082 280 52 41 chr3 134247595 134247960 -25351823 + MTE2b LTR MaLR 1 369 -10 3 1609 262 318 129 17 chr3 134247977 134248217 -25351566 + Kanga1 DNA Tc2 1462 1728 -17 3 1609 195 69 0 0 chr3 134249731 134249760 -25350023 + (CA)n Simple_repeat Simple_repeat 2 30 0 3 1609 261 118 43 14 chr3 134251091 134251160 -25348623 + A-rich Low_complexity Low_complexity 2 72 0 3 1609 309 68 0 0 chr3 134253004 134253048 -25346735 + (TAG)n Simple_repeat Simple_repeat 1 44 0 3 1609 32 67 0 0 chr3 134253048 134253108 -25346675 + AT_rich Low_complexity Low_complexity 1 60 0 3 1609 21 0 0 0 chr3 134253179 134253200 -25346583 + AT_rich Low_complexity Low_complexity 1 21 0 3 1609 444 73 37 0 chr3 134253412 134253494 -25346289 + (TAGA)n Simple_repeat Simple_repeat 2 86 0 3 1609 542 54 14 0 chr3 134253547 134253621 -25346162 + (CATA)n Simple_repeat Simple_repeat 2 76 0 3 1609 566 82 12 0 chr3 134253623 134253708 -25346075 + (TAGA)n Simple_repeat Simple_repeat 3 88 0 3 1609 527 214 65 25 chr3 134254454 134254655 -25345128 - RMER17C LTR ERVK -136 274 66 3 1609 21 0 0 0 chr3 134255028 134255049 -25344734 + AT_rich Low_complexity Low_complexity 1 21 0 3 1609 1601 77 0 0 chr3 134255146 134255413 -25344370 + L1Md_F2 LINE L1 6358 6582 0 3 1609 684 163 0 0 chr3 134255539 134255668 -25344115 + (CA)n Simple_repeat Simple_repeat 1 129 0 3 1609 473 264 60 12 chr3 134255668 134255873 -25343910 - Lx8 LINE L1 -1548 5925 5675 3 1609 219 167 0 0 chr3 134255992 134256034 -25343749 + (TTTA)n Simple_repeat Simple_repeat 2 43 0 3 1609 906 162 7 0 chr3 134256038 134256180 -25343603 - B1_Mus1 SINE Alu -5 143 1 3 1609 460 315 15 23 chr3 134256479 134256609 -25343174 - RSINE1 SINE B4 -35 130 2 3 1609 33121 100 21 19 chr3 134256612 134262852 -25336931 - L1Md_F2 LINE L1 -5 6580 318 3 1609 27 49 0 0 chr3 134262924 134262965 -25336818 + AT_rich Low_complexity Low_complexity 1 41 0 3 1609 992 233 19 28 chr3 134262980 134263196 -25336587 - B3 SINE B2 0 216 3 3 1609 326 250 34 0 chr3 134263841 134263929 -25335854 - Lx9 LINE L1 -341 7303 7213 3 1609 2652 37 65 0 chr3 134263969 134264294 -25335489 + ORR1A0 LTR MaLR 1 346 0 3 1609 1764 60 92 42 chr3 134266345 134266607 -25333176 - L1Md_F2 LINE L1 -11 6571 6297 3 1609 792 159 0 29 chr3 134266604 134266779 -25333004 - Lx2A1 LINE L1 -12 6996 6827 3 1609 419 297 0 35 chr3 134267765 134267880 -25331903 + PB1D10 SINE Alu 6 116 -1 3 1609 36 53 0 0 chr3 134268966 134269023 -25330760 + AT_rich Low_complexity Low_complexity 1 57 0 3 1609 201 108 0 0 chr3 134270303 134270340 -25329443 + (CAAA)n Simple_repeat Simple_repeat 4 40 0 3 1609 21 36 0 0 chr3 134270597 134270625 -25329158 + AT_rich Low_complexity Low_complexity 1 28 0 3 1609 243 0 0 0 chr3 134270694 134270721 -25329062 + (TC)n Simple_repeat Simple_repeat 2 28 0 3 1609 267 39 57 38 chr3 134270723 134270776 -25329007 + (TATG)n Simple_repeat Simple_repeat 2 55 0 3 1609 677 291 67 0 chr3 134271497 134271676 -25328107 - B3 SINE B2 -25 191 1 3 1609 21 36 0 0 chr3 134271975 134272003 -25327780 + AT_rich Low_complexity Low_complexity 1 28 0 3 1609 267 103 0 0 chr3 134272130 134272169 -25327614 + (TTCC)n Simple_repeat Simple_repeat 2 40 0 3 1609 636 14 0 0 chr3 134272172 134272245 -25327538 + (TC)n Simple_repeat Simple_repeat 2 74 0 3 1609 363 44 0 0 chr3 134274669 134274714 -25325069 + (CA)n Simple_repeat Simple_repeat 2 46 0 3 1609 401 359 42 12 chr3 134275572 134275709 -25324074 + Charlie26a DNA MER1_type 69 208 -117 3 1609 213 39 0 0 chr3 134275709 134275735 -25324048 + (TG)n Simple_repeat Simple_repeat 2 27 0 3 1609 401 359 42 12 chr3 134275735 134275837 -25323946 + Charlie26a DNA MER1_type 209 315 -10 3 1609 809 20 10 0 chr3 134277908 134278007 -25321776 + (TCTCCC)n Simple_repeat Simple_repeat 3 102 0 3 1609 281 325 59 62 chr3 134278305 134278561 -25321222 - Lx8 LINE L1 -4 7469 7215 3 1609 5296 141 6 10 chr3 134278594 134279473 -25320310 - Lx LINE L1 0 6654 5780 3 1609 358 138 0 0 chr3 134279476 134279534 -25320249 + 4.5SRNA scRNA scRNA 2 59 -35 3 1609 831 330 66 95 chr3 134279537 134280127 -25319656 - Lx8 LINE L1 -349 7124 6552 3 1609 1505 195 123 9 chr3 134280329 134280496 -25319287 + ORR1C2 LTR MaLR 1 175 -209 3 1609 576 0 0 0 chr3 134280496 134280560 -25319223 + (TC)n Simple_repeat Simple_repeat 1 64 0 3 1609 1505 195 123 9 chr3 134280560 134280734 -25319049 + ORR1C2 LTR MaLR 176 380 -4 3 1609 21 57 0 0 chr3 134280749 134280784 -25318999 + AT_rich Low_complexity Low_complexity 1 35 0 3 1609 882 332 77 29 chr3 134281057 134281501 -25318282 + MER31B LTR ERV1 1 465 -1 3 1609 798 62 0 0 chr3 134282038 134282151 -25317632 + (CAGAGA)n Simple_repeat Simple_repeat 2 114 0 3 1609 814 268 29 5 chr3 134282450 134282656 -25317127 - B3 SINE B2 0 216 6 3 1609 28 48 0 0 chr3 134282900 134282942 -25316841 + AT_rich Low_complexity Low_complexity 1 42 0 3 1609 286 214 14 28 chr3 134283345 134283417 -25316366 + MLT1B LTR MaLR 28 98 -292 3 1609 1059 321 50 92 chr3 134283445 134283964 -25315819 - MTE-int LTR MaLR -528 1052 556 3 1609 410 221 66 19 chr3 134286823 134286929 -25312854 - LTR40b LTR ERVL -8 454 344 3 1609 629 275 25 40 chr3 134286929 134287130 -25312653 + B3A SINE B2 1 198 0 3 1609 524 296 28 0 chr3 134287138 134287280 -25312503 + B1_Mur1 SINE Alu 3 148 -1 3 1609 648 117 40 17 chr3 134287284 134287458 -25312325 + (TAGA)n Simple_repeat Simple_repeat 1 178 0 3 1609 331 368 99 67 chr3 134287513 134287915 -25311868 - LTR40a LTR ERVL -104 415 1 3 1609 2910 65 26 5 chr3 134288121 134288509 -25311274 - MTA_Mm LTR MaLR 0 396 1 3 1609 1085 172 81 121 chr3 134288879 134289186 -25310597 + MTC-int LTR MaLR 639 940 -318 4 1609 1684 186 91 3 chr3 134289190 134289530 -25310253 + MTC LTR MaLR 52 421 0 4 1609 1315 106 0 5 chr3 134289614 134289803 -25309980 - Lx LINE L1 -680 5974 5787 4 1609 402 39 0 0 chr3 134290948 134291000 -25308783 + (TC)n Simple_repeat Simple_repeat 1 52 0 4 1609 245 318 0 23 chr3 134291353 134291440 -25308343 + GA-rich Low_complexity Low_complexity 5 89 0 4 1609 255 31 0 0 chr3 134291810 134291842 -25307941 + (TG)n Simple_repeat Simple_repeat 2 33 0 4 1609 774 32 0 0 chr3 134292446 134292539 -25307244 + (GA)n Simple_repeat Simple_repeat 2 94 0 4 1609 340 208 17 149 chr3 134293215 134293390 -25306393 - Lx9 LINE L1 -264 7380 7229 4 1609 200 146 55 22 chr3 134293820 134293911 -25305872 + (TG)n Simple_repeat Simple_repeat 1 94 0 4 1609 311 235 73 13 chr3 134293922 134294073 -25305710 + (TG)n Simple_repeat Simple_repeat 1 160 0 4 1609 262 323 140 10 chr3 134294080 134294280 -25305503 - B4A SINE B4 0 292 67 4 1609 228 135 0 0 chr3 134294677 134294714 -25305069 + (GAAA)n Simple_repeat Simple_repeat 1 37 0 4 1609 3155 97 32 2 chr3 134294780 134295244 -25304539 - Lx3_Mus LINE L1 -8 7001 6524 4 1609 780 42 0 0 chr3 134295246 134295342 -25304441 + (TC)n Simple_repeat Simple_repeat 1 96 0 4 1609 306 0 0 0 chr3 134295360 134295394 -25304389 + (CA)n Simple_repeat Simple_repeat 2 35 0 4 1609 4609 211 55 56 chr3 134295448 134296537 -25303246 + Lx6 LINE L1 6204 7291 -169 4 1609 378 0 0 0 chr3 134296733 134296775 -25303008 + (TG)n Simple_repeat Simple_repeat 2 43 0 4 1609 30 59 0 0 chr3 134296963 134297014 -25302769 + AT_rich Low_complexity Low_complexity 1 51 0 4 1609 432 224 47 0 chr3 134297314 134297399 -25302384 - BC1_Mm scRNA scRNA -63 89 1 4 1609 371 238 0 6 chr3 134298006 134298179 -25301604 + (TG)n Simple_repeat Simple_repeat 2 173 0 4 1609 186 128 0 0 chr3 134298182 134298221 -25301562 + (TCTG)n Simple_repeat Simple_repeat 2 40 0 4 1609 351 0 0 0 chr3 134298232 134298271 -25301512 + (TG)n Simple_repeat Simple_repeat 2 40 0 4 1609 28 0 0 0 chr3 134298860 134298888 -25300895 + AT_rich Low_complexity Low_complexity 1 28 0 4 1609 23 0 0 0 chr3 134298972 134298995 -25300788 + AT_rich Low_complexity Low_complexity 1 23 0 4 1609 1967 45 0 8 chr3 134299719 134299968 -25299815 - L1Md_F3 LINE L1 -1 6583 6337 4 1609 225 114 0 0 chr3 134299968 134300003 -25299780 + L1Md_F3 LINE L1 6308 6342 -242 4 1609 357 309 36 22 chr3 134300096 134300235 -25299548 - B1F1 SINE Alu -7 142 2 4 1609 1097 177 26 10 chr3 134301049 134301243 -25298540 + ORR1B2 LTR MaLR 1 197 -170 4 1609 474 33 0 0 chr3 134301886 134301946 -25297837 + (TA)n Simple_repeat Simple_repeat 1 60 0 4 1609 537 80 0 0 chr3 134302001 134302076 -25297707 + (TA)n Simple_repeat Simple_repeat 2 76 0 4 1609 6574 103 19 22 chr3 134302504 134303490 -25296293 + RLTR13C1 LTR ERVK 1 983 0 4 1609 574 320 77 18 chr3 134304443 134304729 -25295054 - Lx8 LINE L1 -2 7471 7169 4 1609 251 70 0 122 chr3 134304732 134304760 -25295023 + MT2B LTR ERVL 1 24 -577 4 1609 3717 169 14 35 chr3 134304760 134305496 -25294287 - RMER6D LTR ERVK 0 720 1 4 1609 251 70 0 122 chr3 134305496 134305516 -25294267 + MT2B LTR ERVL 25 43 -558 4 1609 572 126 10 21 chr3 134305534 134305631 -25294152 - RLTR12A LTR ERVK -4 564 469 4 1609 32 26 0 0 chr3 134305631 134305670 -25294113 + AT_rich Low_complexity Low_complexity 1 39 0 4 1609 180 0 0 0 chr3 134305716 134305736 -25294047 + (TG)n Simple_repeat Simple_repeat 2 21 0 4 1609 228 140 77 39 chr3 134305896 134305948 -25293835 + MT2B LTR ERVL 548 601 0 4 1609 409 291 95 0 chr3 134305969 134306127 -25293656 - Lx8 LINE L1 -319 7154 6982 4 1609 563 51 0 12 chr3 134306336 134306416 -25293367 + (TA)n Simple_repeat Simple_repeat 1 79 0 4 1609 493 353 29 53 chr3 134307860 134308141 -25291642 + MT2A LTR ERVL 159 432 -101 4 1609 221 128 21 0 chr3 134308451 134308498 -25291285 + (GA)n Simple_repeat Simple_repeat 1 48 0 4 1609 1578 156 115 48 chr3 134308607 134308938 -25290845 - RLTR15 LTR ERVK -1 358 6 4 1609 721 210 102 10 chr3 134309202 134309399 -25290384 - B3 SINE B2 0 216 2 4 1609 1024 209 24 5 chr3 134309654 134309865 -25289918 + B3 SINE B2 2 216 0 4 1609 2035 178 5 8 chr3 134310231 134310599 -25289184 - ORR1B2 LTR MaLR 0 367 1 4 1609 2158 148 68 28 chr3 134311116 134311513 -25288270 + MTC LTR MaLR 1 413 -8 4 1609 360 164 0 0 chr3 134312099 134312166 -25287617 + (TA)n Simple_repeat Simple_repeat 1 67 0 4 1609 300 27 0 0 chr3 134312166 134312203 -25287580 + (TG)n Simple_repeat Simple_repeat 2 38 0 4 1609 1950 170 42 8 chr3 134312399 134312754 -25287029 + ORR1B2 LTR MaLR 1 367 0 4 1609 3109 44 23 3 chr3 134313273 134313661 -25286122 + MTA_Mm LTR MaLR 1 396 0 4 1609 1688 132 164 3 chr3 134314647 134314959 -25284824 - ORR1B2 LTR MaLR 0 367 6 4 1609 2227 187 2 20 chr3 134315172 134315575 -25284208 - MTB_Mm LTR MaLR -11 396 1 4 1609 320 285 44 7 chr3 134317268 134317470 -25282313 + L1M4 LINE L1 2299 2507 -3639 4 1609 21 0 0 0 chr3 134317518 134317539 -25282244 + AT_rich Low_complexity Low_complexity 1 21 0 4 1609 254 261 69 119 chr3 134318726 134318850 -25280933 + L1M4c LINE L1 1889 2015 -5076 4 1609 1011 62 19 30 chr3 134318850 134319214 -25280569 + (CA)n Simple_repeat Simple_repeat 1 359 0 4 1609 254 254 62 142 chr3 134319214 134319318 -25280465 + L1M4c LINE L1 2016 2123 -4968 4 1609 927 284 153 113 chr3 134319667 134319813 -25279970 - Lx9 LINE L1 -20 7624 7496 4 1609 192 111 0 0 chr3 134319813 134319849 -25279934 + (CA)n Simple_repeat Simple_repeat 1 36 0 4 1609 927 284 153 113 chr3 134319849 134319864 -25279919 - Lx9 LINE L1 -149 7495 7420 4 1609 453 36 0 0 chr3 134319864 134319919 -25279864 + (TC)n Simple_repeat Simple_repeat 2 56 0 4 1609 375 78 0 0 chr3 134319919 134319969 -25279814 + (TG)n Simple_repeat Simple_repeat 2 52 0 4 1609 927 284 153 113 chr3 134319969 134320146 -25279637 - Lx9 LINE L1 -225 7419 7237 4 1609 522 0 0 0 chr3 134320146 134320204 -25279579 + (TA)n Simple_repeat Simple_repeat 1 58 0 4 1609 927 284 153 113 chr3 134320204 134320655 -25279128 - Lx9 LINE L1 -408 7236 6804 4 1609 828 202 71 49 chr3 134320664 134320930 -25278853 + L1_Rod LINE L1 3081 3352 -2495 4 1609 650 62 0 0 chr3 134320926 134321007 -25278776 - L1Md_F2 LINE L1 -458 6126 6046 4 1609 3581 73 0 2 chr3 134321007 134321472 -25278311 + L1Md_F2 LINE L1 6106 6569 -13 4 1609 395 200 28 28 chr3 134321473 134321581 -25278202 + L1_Rod LINE L1 3337 3444 -2403 4 1609 1041 120 0 0 chr3 134321596 134321738 -25278045 - B1_Mus1 SINE Alu -5 143 2 4 1609 271 196 0 0 chr3 134321869 134321925 -25277858 + L1M4c LINE L1 2210 2265 -4904 4 1609 324 295 137 9 chr3 134322176 134322395 -25277388 - L1M4 LINE L1 -4860 1786 1540 4 1609 525 138 0 0 chr3 134322423 134322517 -25277266 + (CA)n Simple_repeat Simple_repeat 1 94 0 4 1609 347 343 43 82 chr3 134322544 134322801 -25276982 - L1M4 LINE L1 -5076 1466 1220 4 1609 510 211 104 9 chr3 134322904 134323019 -25276764 + MTC LTR MaLR 9 134 -287 4 1609 1319 232 132 0 chr3 134323019 134323329 -25276454 - Lx5 LINE L1 -9 7041 6691 4 1609 243 196 64 147 chr3 134323329 134323485 -25276298 - RMER6A LTR ERVK -127 629 487 4 1609 1848 169 41 6 chr3 134323485 134323801 -25275982 - Lx5 LINE L1 -516 6534 6208 4 1609 2491 162 74 16 chr3 134323814 134323874 -25275909 + Lx5 LINE L1 5587 5647 -1403 4 1609 2970 44 12 72 chr3 134323874 134324289 -25275494 - RLTR10 LTR ERVK 0 390 1 4 1609 2491 162 74 16 chr3 134324289 134324725 -25275058 + Lx5 LINE L1 5648 6112 -938 4 1609 1675 186 26 19 chr3 134324725 134325032 -25274751 + MTC LTR MaLR 104 412 -9 4 1609 283 271 31 47 chr3 134325045 134325173 -25274610 - L1M4 LINE L1 -5500 1042 917 4 1609 3023 75 20 12 chr3 134325186 134325590 -25274193 + MTB_Mm LTR MaLR 1 407 0 4 1609 290 319 119 13 chr3 134326678 134326837 -25272946 - MER44B DNA MER2_type -213 337 162 4 1609 1024 262 130 34 chr3 134326838 134327252 -25272531 + Lx9 LINE L1 7015 7468 -176 4 1609 524 289 52 12 chr3 134327458 134327707 -25272076 + L1M2 LINE L1 5357 5615 -685 4 1609 217 290 0 0 chr3 134327732 134327794 -25271989 + ID4 SINE ID 2 63 -20 4 1609 258 350 0 30 chr3 134327816 134327916 -25271867 - MER47A DNA MER2_type -268 98 2 4 1609 1532 192 52 0 chr3 134327990 134328281 -25271502 + MTD LTR MaLR 113 418 -1 4 1609 464 302 87 90 chr3 134328499 134329052 -25270731 + L1M5 LINE L1 4029 4579 -1567 4 1609 314 264 11 44 chr3 134329157 134329248 -25270535 - MLT1A1 LTR MaLR -168 240 153 4 1609 1910 210 15 10 chr3 134329264 134329664 -25270119 - MTB_Mm LTR MaLR -1 406 5 4 1609 604 199 169 34 chr3 134330220 134330397 -25269386 + MTC LTR MaLR 173 373 -48 4 1609 543 96 39 0 chr3 134330511 134330615 -25269168 + (CATA)n Simple_repeat Simple_repeat 1 108 0 4 1609 1623 234 80 5 chr3 134330780 134331170 -25268613 - MTD LTR MaLR 0 419 1 4 1609 21 0 0 0 chr3 134332243 134332264 -25267519 + AT_rich Low_complexity Low_complexity 1 21 0 4 1609 198 0 0 0 chr3 134332335 134332357 -25267426 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 4 1609 1180 86 11 0 chr3 134332646 134332821 -25266962 + (TTTCC)n Simple_repeat Simple_repeat 3 179 0 4 1609 234 181 105 53 chr3 134332962 134333038 -25266745 - RMER17A LTR ERVK -576 175 96 4 1609 336 218 0 0 chr3 134334100 134334187 -25265596 + (TA)n Simple_repeat Simple_repeat 2 88 0 4 1609 523 258 200 38 chr3 134334420 134334722 -25265061 + MTE2a LTR MaLR 5 386 -14 4 1609 286 323 11 0 chr3 134335108 134335201 -25264582 + BC1_Mm scRNA scRNA 2 95 -57 4 1609 399 279 39 50 chr3 134335411 134335592 -25264191 + B3A SINE B2 1 179 -19 4 1609 565 116 0 9 chr3 134335617 134335730 -25264053 + L1_Mus4 LINE L1 6490 6601 -35 4 1609 7187 62 5 3 chr3 134335732 134337140 -25262643 - L1Md_F2 LINE L1 -14 6568 5156 4 1609 14388 79 2 3 chr3 134337138 134339206 -25260577 + L1_Mm LINE L1 3341 5405 -478 4 1609 21 0 0 0 chr3 134340212 134340233 -25259550 + AT_rich Low_complexity Low_complexity 1 21 0 4 1609 2717 91 0 13 chr3 134340929 134341318 -25258465 - L1Md_F2 LINE L1 -7 6575 6192 4 1609 240 35 0 0 chr3 134341649 134341678 -25258105 + (TTA)n Simple_repeat Simple_repeat 2 30 0 4 1609 3560 307 157 42 chr3 134341804 134341938 -25257845 + Tigger1 DNA MER2_type 28 198 -2220 4 1609 387 0 0 0 chr3 134341938 134341981 -25257802 + (TTA)n Simple_repeat Simple_repeat 2 44 0 4 1609 3560 307 157 42 chr3 134341981 134343987 -25255796 + Tigger1 DNA MER2_type 199 2413 -5 4 1609 2175 177 51 0 chr3 134344525 134344959 -25254824 - Lx9 LINE L1 -8 7636 7181 4 1609 300 308 134 17 chr3 134344959 134345131 -25254652 - L1ME1 LINE L1 -229 5950 5759 4 1609 4444 171 59 29 chr3 134345442 134346731 -25253052 - Lx3C LINE L1 0 6981 5691 4 1609 4728 145 26 4 chr3 134346731 134347508 -25252275 + Lx LINE L1 5861 6654 0 4 1609 386 103 0 0 chr3 134347508 134347566 -25252217 + Lx3C LINE L1 5785 5842 -1134 4 201 35533 21 5 7 chr3 134347565 134352756 -25247027 + L1Md_A LINE L1 413 5586 -297 5 1610 8373 36 0 0 chr3 134352756 134353750 -25246033 + L1Md_A LINE L1 5587 6580 -2 5 1610 909 112 7 0 chr3 134353751 134353894 -25245889 + Lx3C LINE L1 5827 5970 -1006 4 1610 333 100 0 0 chr3 134353980 134354030 -25245753 + (ATTG)n Simple_repeat Simple_repeat 2 51 0 5 1610 838 287 80 7 chr3 134354351 134354625 -25245158 + MTD LTR MaLR 24 317 -102 5 1610 728 40 10 0 chr3 134354643 134354743 -25245040 + (TG)n Simple_repeat Simple_repeat 2 102 0 5 1610 538 191 0 14 chr3 134354757 134354900 -25244883 + (TA)n Simple_repeat Simple_repeat 1 141 0 5 1610 213 65 0 0 chr3 134354902 134354933 -25244850 + (TG)n Simple_repeat Simple_repeat 2 32 0 5 1610 298 120 0 57 chr3 134354938 134354991 -25244792 + MTD LTR MaLR 329 378 -41 5 1610 4506 203 29 75 chr3 134355002 134356695 -25243088 + Lx6 LINE L1 5051 6670 -790 5 1610 1799 267 59 65 chr3 134356693 134357266 -25242517 + Lx6 LINE L1 6804 7373 -87 5 1610 3900 55 4 30 chr3 134357282 134357790 -25241993 + L1Md_F2 LINE L1 6076 6570 -12 5 1610 243 0 0 0 chr3 134358441 134358468 -25241315 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 5 1610 7320 72 1 3 chr3 134359213 134360477 -25239306 + L1_Mus1 LINE L1 5306 6565 -2 5 1610 22 35 0 0 chr3 134360477 134360506 -25239277 + AT_rich Low_complexity Low_complexity 1 29 0 5 1610 395 270 98 33 chr3 134360603 134360756 -25239027 - RSINE1 SINE B4 0 165 3 5 1610 420 313 80 0 chr3 134361214 134361364 -25238419 + ID_B1 SINE B4 3 164 -60 5 1610 32 26 0 0 chr3 134361463 134361502 -25238281 + AT_rich Low_complexity Low_complexity 1 39 0 5 1610 523 299 8 17 chr3 134361837 134362072 -25237711 - L1M2 LINE L1 -837 5306 5074 5 1610 27 73 0 0 chr3 134362092 134362147 -25237636 + AT_rich Low_complexity Low_complexity 1 55 0 5 1610 1194 62 0 0 chr3 134362166 134362312 -25237471 + B1_Mus2 SINE Alu 1 146 -1 5 1610 415 270 8 0 chr3 134362612 134362753 -25237030 + L1MA4 LINE L1 5788 5929 -374 5 1610 4161 33 0 2 chr3 134362843 134363330 -25236453 + L1Md_F2 LINE L1 6095 6580 -2 5 1610 25 65 0 0 chr3 134364144 134364190 -25235593 + AT_rich Low_complexity Low_complexity 1 46 0 5 1610 22 0 0 0 chr3 134364453 134364475 -25235308 + AT_rich Low_complexity Low_complexity 1 22 0 5 1610 180 200 0 0 chr3 134364512 134364552 -25235231 + CT-rich Low_complexity Low_complexity 1 40 0 5 1610 1308 91 0 0 chr3 134364596 134364918 -25234865 + (TTC)n Simple_repeat Simple_repeat 1 322 0 5 1610 872 187 4 4 chr3 134364919 134365145 -25234638 + CT-rich Low_complexity Low_complexity 1 226 0 5 1610 1888 210 5 15 chr3 134365523 134365914 -25233869 + Lx5 LINE L1 6459 6845 -205 5 1610 541 331 83 12 chr3 134365916 134366349 -25233434 - L1M2 LINE L1 -2641 3502 3030 5 1610 742 306 83 51 chr3 134366427 134367129 -25232654 + L1MA7 LINE L1 5255 5978 -313 5 1610 899 143 12 0 chr3 134367328 134367489 -25232294 + GA-rich Low_complexity Low_complexity 2 164 0 5 1610 229 308 0 0 chr3 134368251 134368316 -25231467 - MIRm SINE MIR -98 178 114 5 1610 401 113 0 0 chr3 134368790 134368861 -25230922 - L1Md_F2 LINE L1 -4 6578 6508 5 1610 443 54 0 0 chr3 134368861 134368917 -25230866 + L1_Mus1 LINE L1 5856 5911 -656 5 1610 201 268 91 23 chr3 134369640 134369728 -25230055 + L2a LINE L2 3056 3149 -277 5 1610 471 107 0 0 chr3 134369760 134369835 -25229948 + (CA)n Simple_repeat Simple_repeat 1 75 0 5 1610 2527 160 25 4 chr3 134370900 134371612 -25228171 + L1_Mur1 LINE L1 687 1530 -4356 5 1610 357 294 66 9 chr3 134372911 134373052 -25226731 + MLT1F2 LTR MaLR 397 557 -3 5 1610 297 363 44 13 chr3 134373603 134373762 -25226021 - MIR SINE MIR -2 260 97 5 1610 609 247 77 0 chr3 134373943 134374125 -25225658 + Lx8 LINE L1 6874 7069 -404 5 1610 2073 86 33 7 chr3 134374441 134374744 -25225039 - L1Md_F2 LINE L1 0 6582 6272 5 1610 1520 274 54 7 chr3 134375309 134375824 -25223959 - Lx6 LINE L1 -31 7429 6512 5 1610 741 287 63 13 chr3 134375819 134376227 -25223556 + Lx5 LINE L1 6045 6715 -745 5 1610 469 130 27 61 chr3 134377996 134378108 -25221675 + GA-rich Low_complexity Low_complexity 3 113 0 5 1610 1329 33 0 32 chr3 134378108 134378294 -25221489 + (GGGAGA)n Simple_repeat Simple_repeat 1 180 0 5 1610 469 130 27 61 chr3 134378294 134378328 -25221455 + polypurine Low_complexity Low_complexity 114 144 0 5 1610 862 155 30 139 chr3 134378455 134378657 -25221126 - MT2A LTR ERVL -353 180 1 5 1610 3217 204 35 0 chr3 134378825 134379501 -25220282 + Lx9 LINE L1 6652 7351 -293 5 1610 1826 185 57 51 chr3 134379505 134380080 -25219703 - RLTR33 LTR ERVK -5 673 2 5 1610 2081 237 36 70 chr3 134380412 134381002 -25218781 + RLTR18 LTR ERVK 43 612 -4 5 1610 359 242 16 24 chr3 134381577 134381700 -25218083 + Lx2B LINE L1 6879 7000 0 5 1610 645 293 37 0 chr3 134381714 134381878 -25217905 - B3A SINE B2 -2 196 27 5 1610 32051 67 4 2 chr3 134381896 134384262 -25215521 - L1Md_F2 LINE L1 0 6582 4209 5 1610 306 0 0 0 chr3 134384262 134384296 -25215487 + (CA)n Simple_repeat Simple_repeat 1 34 0 5 1610 32051 81 7 3 chr3 134384296 134388135 -25211648 - L1Md_F2 LINE L1 -1675 4208 357 5 1610 339 291 29 29 chr3 134388520 134388658 -25211125 - MIR SINE MIR -55 207 70 5 1610 296 319 88 13 chr3 134388665 134388903 -25210880 + Charlie4a DNA MER1_type 159 414 -94 5 1610 299 262 12 12 chr3 134390382 134390467 -25209316 - ORR1D2 LTR MaLR 0 370 286 5 1610 971 257 41 4 chr3 134390629 134390875 -25208908 + RCHARR1 DNA MER1_type 258 512 -462 5 1610 5602 94 21 8 chr3 134390876 134391676 -25208107 - Lx LINE L1 -1 6653 5843 5 1610 24 0 0 0 chr3 134391760 134391784 -25207999 + AT_rich Low_complexity Low_complexity 1 24 0 5 1610 3227 118 4 26 chr3 134391806 134392156 -25207627 - L1_Mur1 LINE L1 -606 5280 4942 5 1610 3740 53 0 0 chr3 134392156 134392608 -25207175 + L1_Mus1 LINE L1 6114 6565 -2 5 1610 3227 118 4 26 chr3 134392608 134392790 -25206993 - L1_Mur1 LINE L1 -945 4941 4760 5 1610 3529 105 98 5 chr3 134392788 134393352 -25206431 + L1_Mur1 LINE L1 5253 5868 -18 5 1610 4511 178 27 17 chr3 134393352 134394217 -25205566 + Lx3C LINE L1 6099 6971 -5 5 1610 356 261 54 0 chr3 134394249 134394360 -25205423 + RCHARR1 DNA MER1_type 711 827 -147 5 1610 617 258 28 66 chr3 134394547 134394759 -25205024 - B3 SINE B2 -11 205 2 5 1610 674 285 16 11 chr3 134395949 134396137 -25203646 - B3 SINE B2 -27 189 1 5 1610 325 370 0 29 chr3 134396447 134396550 -25203233 - B1F1 SINE Alu -46 103 4 5 1610 229 344 0 30 chr3 134396493 134396559 -25203224 - B4A SINE B4 -147 145 82 5 1610 1025 154 77 24 chr3 134396613 134396859 -25202924 + Lx9 LINE L1 7386 7644 0 5 1610 474 215 37 0 chr3 134397045 134397152 -25202631 - Lx9 LINE L1 -601 7043 6933 5 1610 280 299 106 46 chr3 134397154 134397305 -25202478 - RMER15 LTR ERVL -120 455 296 5 1610 221 0 0 33 chr3 134397359 134397389 -25202394 + (TTG)n Simple_repeat Simple_repeat 2 30 0 5 1610 1187 244 127 25 chr3 134397406 134397532 -25202251 + MTD LTR MaLR 63 200 -219 5 1610 1594 39 0 10 chr3 134397532 134397741 -25202042 + L1Md_F3 LINE L1 6378 6584 0 5 1610 1187 244 127 25 chr3 134397741 134397870 -25201913 + MTD LTR MaLR 201 345 -74 5 1610 180 0 0 0 chr3 134397870 134397890 -25201893 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 5 1610 1187 244 127 25 chr3 134397890 134397957 -25201826 + MTD LTR MaLR 346 418 -1 5 1610 297 0 0 0 chr3 134399459 134399492 -25200291 + (CA)n Simple_repeat Simple_repeat 2 34 0 5 1610 396 0 0 0 chr3 134399492 134399535 -25200248 + (TA)n Simple_repeat Simple_repeat 2 45 0 5 1610 280 368 25 44 chr3 134400348 134400507 -25199276 - ORR1E LTR MaLR -125 234 79 5 1610 1457 191 111 23 chr3 134400685 134400807 -25198976 - ORR1D1 LTR MaLR -1 373 224 5 1610 183 80 0 0 chr3 134400807 134400832 -25198951 + (CAGA)n Simple_repeat Simple_repeat 1 25 0 5 1610 1457 191 111 23 chr3 134400832 134400903 -25198880 - ORR1D1 LTR MaLR -151 223 159 5 1610 252 0 0 0 chr3 134400903 134400931 -25198852 + (GCATG)n Simple_repeat Simple_repeat 1 28 0 5 1610 1457 191 111 23 chr3 134400931 134401079 -25198704 - ORR1D1 LTR MaLR -216 158 3 5 1610 729 243 110 31 chr3 134401175 134401430 -25198353 + RLTR16 LTR ERVK 24 298 -207 5 1610 23 54 0 0 chr3 134402055 134402092 -25197691 + AT_rich Low_complexity Low_complexity 1 37 0 5 1610 1394 225 94 27 chr3 134402335 134402704 -25197079 + RMER19B LTR ERVK 71 653 -249 5 1610 505 191 86 99 chr3 134402704 134402855 -25196928 + ORR1D1 LTR MaLR 1 149 -225 5 1610 2021 185 98 91 chr3 134402870 134403586 -25196197 + RMER6C LTR ERVK 1 708 -12 5 1610 477 201 73 22 chr3 134403604 134403741 -25196042 + ORR1D1 LTR MaLR 154 297 -77 5 1610 315 161 0 0 chr3 134404228 134404284 -25195499 + (TG)n Simple_repeat Simple_repeat 1 56 0 5 1610 425 286 21 73 chr3 134404286 134404478 -25195305 - B3A SINE B2 -16 182 1 5 1610 240 351 0 13 chr3 134404590 134404665 -25195118 + B4 SINE B4 10 83 -209 5 1610 33 25 0 0 chr3 134404941 134404981 -25194802 + AT_rich Low_complexity Low_complexity 1 40 0 5 1610 1975 254 92 51 chr3 134405244 134405535 -25194248 + RLTR40 LTR ERVK 1 291 -526 5 1610 489 99 0 0 chr3 134405535 134405616 -25194167 + (TG)n Simple_repeat Simple_repeat 2 82 0 5 1610 1975 254 92 51 chr3 134405616 134405793 -25193990 + RLTR40 LTR ERVK 292 490 -327 5 1610 444 19 0 0 chr3 134405793 134405846 -25193937 + (CAAAA)n Simple_repeat Simple_repeat 3 55 0 5 1610 1975 254 92 51 chr3 134405846 134405995 -25193788 + RLTR40 LTR ERVK 491 652 -165 5 1610 384 22 0 0 chr3 134405995 134406040 -25193743 + (CA)n Simple_repeat Simple_repeat 2 46 0 5 1610 1975 254 92 51 chr3 134406040 134406201 -25193582 + RLTR40 LTR ERVK 653 812 -5 5 1610 267 31 0 0 chr3 134406374 134406406 -25193377 + (CA)n Simple_repeat Simple_repeat 1 32 0 5 1610 538 275 0 0 chr3 134406573 134406693 -25193090 + PB1D9 SINE Alu 1 120 0 5 1610 879 171 0 14 chr3 134407198 134407340 -25192443 + B1_Mus1 SINE Alu 3 142 -6 5 1610 824 10 20 0 chr3 134407371 134407471 -25192312 + (GAGAA)n Simple_repeat Simple_repeat 4 105 0 5 1610 2201 66 6 29 chr3 134407550 134407861 -25191922 + L1_Mus3 LINE L1 6335 6638 0 5 1610 24 32 0 0 chr3 134407863 134407894 -25191889 + AT_rich Low_complexity Low_complexity 1 31 0 5 1610 303 160 25 62 chr3 134408101 134408181 -25191602 + RLTR25B LTR ERVK 426 502 -526 5 1610 762 109 0 0 chr3 134408115 134408225 -25191558 + B1_Mus1 SINE Alu 39 148 0 5 1610 218 274 50 40 chr3 134408401 134408500 -25191283 + MIR SINE MIR 153 252 -10 5 1610 1632 212 26 31 chr3 134408523 134408874 -25190909 - ORR1D1 LTR MaLR -1 373 25 5 1610 907 187 0 0 chr3 134408878 134409033 -25190750 + ORR1B1 LTR MaLR 1 155 -239 6 1610 33430 91 5 5 chr3 134409046 134415236 -25184547 - L1Md_F2 LINE L1 -19 6563 380 6 1610 1372 180 4 21 chr3 134415252 134415531 -25184252 + ORR1B1 LTR MaLR 129 394 0 6 1610 3607 68 12 62 chr3 134415591 134416110 -25183673 + MT2_Mm LTR ERVL 1 493 0 6 1610 4463 174 51 5 chr3 134416371 134417208 -25182575 - Lx4B LINE L1 -6 7052 6177 6 1610 22 0 0 0 chr3 134417752 134417774 -25182009 + AT_rich Low_complexity Low_complexity 1 22 0 6 1610 569 98 0 32 chr3 134418047 134418142 -25181641 + (TC)n Simple_repeat Simple_repeat 1 92 0 6 1610 1588 317 55 35 chr3 134418468 134418607 -25181176 - MERVL_2A-int LTR ERVL -1294 4467 4332 6 1610 1099 83 0 14 chr3 134418607 134418754 -25181029 + B1_Mm SINE Alu 3 147 0 6 1610 1588 317 55 35 chr3 134418754 134419377 -25180406 - MERVL_2A-int LTR ERVL -1430 4331 3690 6 1610 1309 335 29 56 chr3 134419351 134419507 -25180276 - ERVL-B4-int LTR ERVL -4940 774 645 6 1610 1026 44 88 0 chr3 134419507 134419643 -25180140 + B1_Mus1 SINE Alu 1 148 0 6 1610 1309 335 29 56 chr3 134419643 134420271 -25179512 - ERVL-B4-int LTR ERVL -5070 644 11 6 1610 260 283 87 149 chr3 134420281 134420522 -25179261 - MLT2B1 LTR ERVL 0 567 342 6 1610 795 297 135 7 chr3 134420537 134420825 -25178958 - MTEb LTR MaLR -49 330 6 6 1610 2086 307 62 27 chr3 134420829 134421528 -25178255 - MTEb-int LTR MaLR -2 1578 856 6 1610 1204 283 57 15 chr3 134421525 134421859 -25177924 - MTEb-int LTR MaLR -1215 365 18 6 1610 606 230 44 0 chr3 134421883 134422018 -25177765 - MTEb LTR MaLR -7 372 232 6 1610 21 0 0 0 chr3 134422742 134422763 -25177020 + AT_rich Low_complexity Low_complexity 1 21 0 6 1610 190 287 92 92 chr3 134423302 134423421 -25176362 + L2b LINE L2 3257 3375 0 6 1610 240 322 0 0 chr3 134424100 134424159 -25175624 + B4A SINE B4 2 60 -232 6 1610 225 178 0 0 chr3 134424159 134424204 -25175579 + (TA)n Simple_repeat Simple_repeat 1 45 0 6 1610 222 148 0 0 chr3 134424290 134424344 -25175439 + (TTTTTG)n Simple_repeat Simple_repeat 1 54 0 6 1610 1835 144 101 3 chr3 134424761 134425088 -25174695 - ORR1B2 LTR MaLR 0 367 9 6 1610 238 270 0 13 chr3 134425872 134425947 -25173836 - Lx7 LINE L1 -2 7694 7621 6 1610 256 254 42 0 chr3 134426200 134426271 -25173512 - L1MA9 LINE L1 -401 5911 5838 6 1610 3068 176 41 42 chr3 134426291 134426845 -25172938 - RMER6C LTR ERVK 0 690 136 6 1610 4022 113 16 8 chr3 134426845 134427463 -25172320 + Lx LINE L1 6029 6651 -3 6 1610 3068 176 41 42 chr3 134427463 134427597 -25172186 - RMER6C LTR ERVK -555 135 3 6 1610 879 321 41 34 chr3 134427599 134427804 -25171979 - L1M2 LINE L1 -477 5823 5616 6 1610 1871 101 10 29 chr3 134427804 134428110 -25171673 + L1Md_F2 LINE L1 6283 6582 0 6 1610 879 321 41 34 chr3 134428110 134428465 -25171318 - L1M2 LINE L1 -685 5615 5259 6 1610 6238 76 16 5 chr3 134428467 134429315 -25170468 - L1Md_F2 LINE L1 -1 6581 5724 6 1610 1844 58 0 0 chr3 134429300 134429526 -25170257 + L1Md_F2 LINE L1 5527 5752 -131 6 1610 259 244 116 22 chr3 134429523 134429661 -25170122 - L1M2 LINE L1 -878 5265 5115 6 1610 563 230 39 92 chr3 134429829 134430235 -25169548 - L1M2 LINE L1 -1325 4815 4457 6 1610 370 254 55 48 chr3 134430261 134430453 -25169330 - ORR1D1 LTR MaLR 0 374 143 6 1610 5213 54 0 3 chr3 134430453 134431100 -25168683 + L1Md_F2 LINE L1 5926 6570 -12 6 1610 307 265 67 91 chr3 134431100 134431111 -25168672 - ORR1D1 LTR MaLR -187 142 132 6 1610 495 142 0 150 chr3 134431111 134431244 -25168539 + BC1_Mm scRNA scRNA 1 113 -39 6 1610 1724 232 93 43 chr3 134431384 134431867 -25167916 - Lx9 LINE L1 -326 7318 6812 6 1610 1183 159 127 0 chr3 134431867 134432150 -25167633 + Lx9 LINE L1 7326 7644 0 6 1610 7773 77 3 1 chr3 134434114 134435675 -25164108 - L1_Mus2 LINE L1 0 6566 5000 6 1610 494 246 32 84 chr3 134435675 134435830 -25163953 + MT2B LTR ERVL 111 257 -344 6 1610 977 99 7 7 chr3 134435732 134435874 -25163909 + B1_Mus1 SINE Alu 6 147 -1 6 1610 1453 220 128 128 chr3 134436490 134437038 -25162745 - RMER15 LTR ERVL -1 574 27 6 1610 396 82 0 0 chr3 134437200 134437261 -25162522 + (TG)n Simple_repeat Simple_repeat 2 62 0 6 1610 425 206 95 0 chr3 134437294 134437420 -25162363 - Lx9 LINE L1 -8 7636 7499 6 1610 945 282 34 0 chr3 134437417 134437679 -25162104 + Lx9 LINE L1 7186 7456 -188 6 1610 30 0 0 0 chr3 134438709 134438739 -25161044 + AT_rich Low_complexity Low_complexity 1 30 0 6 1610 2280 184 76 38 chr3 134438764 134439032 -25160751 - RLTR12B LTR ERVK -2 526 273 6 1610 726 12 0 0 chr3 134439032 134439115 -25160668 + (TTCTC)n Simple_repeat Simple_repeat 5 87 0 6 1610 2280 184 76 38 chr3 134439115 134439348 -25160435 - RLTR12B LTR ERVK -256 272 6 6 1610 1830 139 56 78 chr3 134439411 134439771 -25160012 - ORR1B1 LTR MaLR 0 394 43 6 1610 315 146 0 0 chr3 134439786 134439841 -25159942 + (TATG)n Simple_repeat Simple_repeat 1 55 0 6 1610 459 0 0 0 chr3 134439877 134439928 -25159855 + (TG)n Simple_repeat Simple_repeat 2 52 0 6 1610 261 299 55 44 chr3 134439945 134440036 -25159747 + RMER12B LTR ERVK 1438 1529 -43 6 1610 355 196 0 42 chr3 134440043 134440120 -25159663 + RMER12B LTR ERVK 1341 1404 0 6 1610 344 309 68 47 chr3 134440129 134440218 -25159565 - L1_Rod LINE L1 -574 5726 5636 6 1610 6167 55 32 3 chr3 134440218 134441001 -25158782 - RLTR13C2 LTR ERVK -2 806 1 6 1610 344 309 68 47 chr3 134441001 134441037 -25158746 - L1_Rod LINE L1 -665 5635 5594 6 1610 1153 50 0 18 chr3 134441037 134441200 -25158583 + (TTC)n Simple_repeat Simple_repeat 3 162 0 6 1610 344 261 68 40 chr3 134441200 134441322 -25158461 - L1_Rod LINE L1 -707 5593 5411 6 1610 942 314 100 48 chr3 134441324 134441903 -25157880 + RLTR18 LTR ERVK 6 614 -2 6 1610 181 286 0 41 chr3 134442341 134442414 -25157369 + MIRb SINE MIR 119 188 -80 6 1610 23 54 0 0 chr3 134442674 134442711 -25157072 + AT_rich Low_complexity Low_complexity 1 37 0 6 1610 183 80 0 0 chr3 134442982 134443007 -25156776 + (TAA)n Simple_repeat Simple_repeat 2 26 0 6 1610 460 282 50 39 chr3 134443016 134443197 -25156586 + B3A SINE B2 1 183 -15 6 1610 687 320 92 12 chr3 134443473 134443811 -25155972 + Lx8 LINE L1 7106 7470 -3 6 1610 1368 246 90 87 chr3 134443920 134444463 -25155320 + RMER2 LTR ERV1 1 545 -22 6 1610 186 43 0 0 chr3 134444677 134444700 -25155083 + (TTTTC)n Simple_repeat Simple_repeat 2 24 0 6 1610 2144 102 19 9 chr3 134444703 134445019 -25154764 - Lx3_Mus LINE L1 -9 7000 6682 6 1610 4600 129 42 9 chr3 134445360 134446121 -25153662 + L1_Mus4 LINE L1 5851 6636 0 6 1610 207 162 0 0 chr3 134447686 134447723 -25152060 + (TA)n Simple_repeat Simple_repeat 1 37 0 6 1610 684 101 0 0 chr3 134447887 134447986 -25151797 + L1Md_F2 LINE L1 409 507 -6131 6 1610 28727 91 6 6 chr3 134447982 134452927 -25146856 + L1Md_F2 LINE L1 639 5584 -299 6 1610 7166 84 11 1 chr3 134452930 134453904 -25145879 + L1Md_F2 LINE L1 5588 6571 -11 6 1610 24 67 0 0 chr3 134453917 134453962 -25145821 + AT_rich Low_complexity Low_complexity 1 45 0 6 1610 3170 60 49 0 chr3 134454938 134455389 -25144394 - L1_Mus4 LINE L1 -558 6078 5606 6 1610 3822 116 0 2 chr3 134455389 134455935 -25143848 + L1_Mus4 LINE L1 6089 6633 -3 6 1610 29822 94 12 2 chr3 134456095 134461267 -25138516 + L1Md_F2 LINE L1 357 5583 -300 6 1610 7380 73 19 7 chr3 134461267 134462251 -25137532 + L1Md_F2 LINE L1 5587 6582 0 6 1610 289 336 21 7 chr3 134462260 134462401 -25137382 + MER2 DNA MER2_type 148 290 -55 6 1610 673 250 7 0 chr3 134462456 134462596 -25137187 + B1_Mus2 SINE Alu 7 147 0 6 1610 24 0 0 0 chr3 134462957 134462981 -25136802 + AT_rich Low_complexity Low_complexity 1 24 0 6 1610 251 225 24 24 chr3 134463086 134463168 -25136615 + (TCTCTG)n Simple_repeat Simple_repeat 3 84 0 6 1610 1206 78 0 0 chr3 134463168 134463348 -25136435 + (TC)n Simple_repeat Simple_repeat 1 180 0 6 1610 411 346 6 25 chr3 134463350 134463513 -25136270 - Lx8 LINE L1 -144 7329 7170 6 1610 1594 232 55 45 chr3 134463523 134463924 -25135859 + MTD LTR MaLR 1 405 -14 6 1610 1058 331 60 6 chr3 134463936 134464449 -25135334 - Lx8 LINE L1 -316 7157 6617 6 1610 200 200 0 0 chr3 134464532 134464577 -25135206 + T-rich Low_complexity Low_complexity 1 45 0 6 1610 1986 140 50 53 chr3 134467213 134467591 -25132192 - ORR1C1 LTR MaLR 0 378 2 6 1610 744 224 0 0 chr3 134468040 134468183 -25131600 + B1_Mur2 SINE Alu 1 143 -6 6 1610 324 48 0 0 chr3 134468185 134468227 -25131556 + (CAAA)n Simple_repeat Simple_repeat 2 43 0 6 1610 232 247 24 12 chr3 134468833 134468915 -25130868 + (TG)n Simple_repeat Simple_repeat 2 84 0 6 1610 302 362 6 136 chr3 134469149 134469325 -25130458 - MTEa LTR MaLR -226 153 1 6 1610 22 0 0 0 chr3 134470196 134470218 -25129565 + AT_rich Low_complexity Low_complexity 1 22 0 6 1610 27 29 0 0 chr3 134470522 134470556 -25129227 + AT_rich Low_complexity Low_complexity 1 34 0 6 1610 360 189 0 0 chr3 134471211 134471285 -25128498 + (TA)n Simple_repeat Simple_repeat 2 75 0 6 1610 726 198 0 0 chr3 134472234 134472391 -25127392 + GA-rich Low_complexity Low_complexity 1 157 0 6 1610 274 250 0 35 chr3 134472533 134472620 -25127163 + MLT1A1 LTR MaLR 323 406 -2 6 1610 740 351 38 118 chr3 134473902 134474335 -25125448 + MLT1-int LTR MaLR 898 1293 -78 6 1610 1430 70 0 11 chr3 134474335 134474524 -25125259 + B2_Mm2 SINE B2 3 189 -6 6 1610 740 351 38 118 chr3 134474524 134474590 -25125193 + MLT1-int LTR MaLR 1294 1357 -14 6 1610 23294 62 7 3 chr3 134474653 134478266 -25121517 + L1Md_F2 LINE L1 716 4439 -1447 6 201 33733 37 2 0 chr3 134478307 134483746 -25116037 + L1Md_T LINE L1 43 5589 -297 6 1611 8956 9 0 0 chr3 134483746 134484742 -25115041 + L1Md_T LINE L1 5590 6585 0 6 1611 8431 70 2 2 chr3 134484748 134485910 -25113873 + L1Md_F2 LINE L1 4427 5588 -298 6 1611 6797 78 46 12 chr3 134485911 134486873 -25112910 + L1Md_F2 LINE L1 5590 6583 -2 6 1611 1477 199 30 40 chr3 134487070 134487473 -25112310 - Lx7 LINE L1 0 7696 7298 6 1611 1019 204 21 117 chr3 134487516 134487849 -25111934 - Lx4B LINE L1 -43 7015 6715 6 1611 3881 197 78 32 chr3 134487849 134488465 -25111318 - Lx7 LINE L1 -925 6771 6172 6 1611 1380 77 11 0 chr3 134488465 134488647 -25111136 - B2_Mm1t SINE B2 -8 185 2 6 1611 3881 197 78 32 chr3 134488647 134488965 -25110818 - Lx7 LINE L1 -1525 6171 5794 6 1611 1407 247 26 12 chr3 134489045 134489389 -25110394 - ORR1D2 LTR MaLR 0 370 22 6 1611 806 52 9 0 chr3 134490319 134490435 -25109348 + (CA)n Simple_repeat Simple_repeat 2 118 0 6 1611 1184 34 0 14 chr3 134491065 134491213 -25108570 + B1_Mus2 SINE Alu 2 147 0 6 1611 207 0 0 0 chr3 134491213 134491236 -25108547 + (A)n Simple_repeat Simple_repeat 1 23 0 6 1611 1102 76 0 0 chr3 134491281 134491417 -25108366 + B1_Mus1 SINE Alu 4 139 -9 6 1611 207 0 0 0 chr3 134491417 134491440 -25108343 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 6 1611 377 229 9 0 chr3 134493371 134493476 -25106307 + (TG)n Simple_repeat Simple_repeat 2 107 0 6 1611 225 108 0 0 chr3 134493476 134493513 -25106270 + (CA)n Simple_repeat Simple_repeat 2 38 0 6 1611 21 36 0 0 chr3 134495356 134495384 -25104399 + AT_rich Low_complexity Low_complexity 1 28 0 6 1611 240 303 0 0 chr3 134495407 134495473 -25104310 - RMER30 DNA MER1_type -3 199 134 6 1611 384 168 0 39 chr3 134497318 134497473 -25102310 + (TG)n Simple_repeat Simple_repeat 2 150 0 6 1611 246 235 60 41 chr3 134497494 134497599 -25102184 - B3A SINE B2 -13 203 105 6 1611 26 0 0 0 chr3 134497971 134497997 -25101786 + AT_rich Low_complexity Low_complexity 1 26 0 6 1611 603 0 0 0 chr3 134498319 134498386 -25101397 + (TTTC)n Simple_repeat Simple_repeat 2 68 0 6 1611 22 35 0 0 chr3 134498521 134498550 -25101233 + AT_rich Low_complexity Low_complexity 1 29 0 6 1611 447 137 0 0 chr3 134498574 134498647 -25101136 + (TA)n Simple_repeat Simple_repeat 2 74 0 6 1611 5056 141 12 6 chr3 134498927 134499742 -25100041 + Lx2 LINE L1 6171 6990 -7 7 1611 204 179 0 0 chr3 134500185 134500224 -25099559 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 1611 527 317 110 29 chr3 134500455 134500838 -25098945 + Lx8 LINE L1 6879 7292 -181 2 1611 2591 250 95 23 chr3 134500856 134501881 -25097902 - L1_Mur3 LINE L1 -889 4991 3894 3 1611 993 147 0 0 chr3 134502540 134502710 -25097073 + (CCA)n Simple_repeat Simple_repeat 1 170 0 4 1611 402 331 114 17 chr3 134503129 134503479 -25096304 - L1MD1 LINE L1 -106 6073 5695 5 1611 353 330 54 30 chr3 134503686 134503889 -25095894 - L1MD1 LINE L1 -1538 4608 4401 5 1611 207 0 0 0 chr3 134503904 134503927 -25095856 + (CA)n Simple_repeat Simple_repeat 2 24 0 6 1611 355 204 0 64 chr3 134503937 134504047 -25095736 - Lx3C LINE L1 -5 6971 6869 7 1611 416 229 46 0 chr3 134504243 134504374 -25095409 - L1M4b LINE L1 -4870 2464 2328 8 1611 562 274 199 9 chr3 134504389 134504459 -25095324 - L1MD LINE L1 -1120 5026 4945 9 1611 225 0 0 0 chr3 134504459 134504484 -25095299 + (TA)n Simple_repeat Simple_repeat 2 26 0 1 1611 562 274 199 9 chr3 134504484 134504729 -25095054 - L1MD LINE L1 -1202 4944 4659 9 1611 570 29 0 0 chr3 134504729 134504797 -25094986 + (TC)n Simple_repeat Simple_repeat 1 68 0 1 1611 562 274 199 9 chr3 134504797 134505122 -25094661 - L1MD LINE L1 -1488 4658 4266 9 1611 315 354 72 14 chr3 134505233 134505442 -25094341 - L1MD1 LINE L1 -2025 4121 3901 5 1611 311 220 48 63 chr3 134505485 134505516 -25094267 - MER5C DNA MER1_type -134 179 148 1 1611 1623 278 43 6 chr3 134505516 134506030 -25093753 - MT2A LTR ERVL 0 533 1 1 1611 311 220 48 63 chr3 134506030 134506124 -25093659 - MER5C DNA MER1_type -166 147 56 1 1611 288 72 0 3 chr3 134506333 134506390 -25093393 + Lx2 LINE L1 6950 6997 0 1 1611 297 0 0 0 chr3 134507174 134507207 -25092576 + (CAGA)n Simple_repeat Simple_repeat 4 36 0 1 1611 248 281 34 0 chr3 134507239 134507328 -25092455 - L1MD LINE L1 -2415 3731 3640 1 1611 344 343 36 0 chr3 134507838 134507975 -25091808 + MLT1E1A LTR MaLR 535 676 -4 1 1611 327 65 0 0 chr3 134508578 134508624 -25091159 + (CA)n Simple_repeat Simple_repeat 1 46 0 1 1611 369 0 0 0 chr3 134508624 134508664 -25091119 + (GA)n Simple_repeat Simple_repeat 2 42 0 1 1611 2793 27 0 12 chr3 134508718 134509060 -25090723 + ORR1A0 LTR MaLR 1 338 -8 2 1611 2316 68 0 0 chr3 134510444 134510737 -25089046 - L1_Mus1 LINE L1 0 6567 6275 2 1611 1303 76 11 31 chr3 134511790 134511981 -25087802 + B2_Mm1t SINE B2 2 188 -5 2 1611 492 48 0 0 chr3 134512792 134512855 -25086928 + (TG)n Simple_repeat Simple_repeat 2 64 0 2 1611 450 0 0 0 chr3 134513029 134513079 -25086704 + (CA)n Simple_repeat Simple_repeat 1 50 0 2 1611 391 40 0 0 chr3 134513079 134513129 -25086654 - Lx3C LINE L1 -398 6578 6529 2 1611 2926 112 22 56 chr3 134513128 134513667 -25086116 + Lx3C LINE L1 5990 6510 -466 2 1611 40 0 0 0 chr3 134514967 134515007 -25084776 + AT_rich Low_complexity Low_complexity 1 40 0 2 1611 501 228 171 70 chr3 134515986 134516372 -25083411 - L1MA10 LINE L1 -3 6331 5907 2 1611 24 32 0 0 chr3 134516725 134516756 -25083027 + AT_rich Low_complexity Low_complexity 1 31 0 2 1611 238 280 80 0 chr3 134517231 134517306 -25082477 + ID2 SINE ID 3 83 0 2 1611 243 114 0 0 chr3 134517315 134517359 -25082424 + (GA)n Simple_repeat Simple_repeat 1 44 0 3 1611 299 343 13 59 chr3 134517427 134517579 -25082204 - MIRb SINE MIR -14 254 110 3 1611 2887 71 39 3 chr3 134518076 134518458 -25081325 - MTA_Mm LTR MaLR 0 396 1 3 1611 7380 77 4 88 chr3 134518458 134519268 -25080515 - MTA_Mm-int LTR MaLR 0 1098 387 3 1611 3759 51 2 8 chr3 134519268 134519739 -25080044 - L1Md_F2 LINE L1 0 6582 6115 3 1611 7380 77 4 88 chr3 134519739 134520124 -25079659 - MTA_Mm-int LTR MaLR -712 386 3 3 1611 3136 58 2 5 chr3 134520126 134520523 -25079260 - MTA_Mm LTR MaLR 0 396 1 3 1611 470 222 93 0 chr3 134521067 134521175 -25078608 - PB1D9 SINE Alu -1 119 2 3 1611 1138 255 36 18 chr3 134521227 134521463 -25078320 - RMER5 LTR ERV1 -14 520 280 3 1611 922 137 14 0 chr3 134521463 134521609 -25078174 + RMER6A LTR ERVK 1 148 -608 3 1611 24 32 0 0 chr3 134521609 134521640 -25078143 + AT_rich Low_complexity Low_complexity 1 31 0 3 1611 369 109 0 0 chr3 134521971 134522026 -25077757 + (TA)n Simple_repeat Simple_repeat 2 56 0 3 1611 2116 98 63 0 chr3 134522077 134522392 -25077391 - L1_Mus3 LINE L1 0 6638 6304 3 1611 2207 154 19 6 chr3 134522392 134522757 -25077026 + RMER6A LTR ERVK 387 756 0 3 1611 1144 234 71 24 chr3 134522757 134523020 -25076763 - RMER5 LTR ERV1 -254 280 4 4 1611 22 35 0 0 chr3 134523791 134523820 -25075963 + AT_rich Low_complexity Low_complexity 1 29 0 4 1611 224 167 51 20 chr3 134524674 134524772 -25075011 + CT-rich Low_complexity Low_complexity 1 101 0 4 1611 323 252 22 52 chr3 134524785 134524919 -25074864 + CT-rich Low_complexity Low_complexity 5 134 0 4 1611 1712 73 0 0 chr3 134524975 134525194 -25074589 - MTB LTR MaLR 0 400 182 4 1611 252 0 0 0 chr3 134525210 134525238 -25074545 + (TTG)n Simple_repeat Simple_repeat 3 30 0 4 1611 37286 34 1 7 chr3 134525402 134531561 -25068222 - L1Md_T LINE L1 -2 6580 467 4 1611 417 144 22 66 chr3 134531561 134531637 -25068146 - MTB LTR MaLR -198 223 151 4 1611 366 113 16 31 chr3 134531637 134531701 -25068082 + RMER17A2 LTR ERVK 2 64 -842 4 1611 1345 156 112 19 chr3 134532082 134532495 -25067288 + Lx9 LINE L1 7193 7643 -1 4 1611 285 270 0 33 chr3 134532758 134532850 -25066933 + (TATG)n Simple_repeat Simple_repeat 4 92 0 4 1611 930 108 127 0 chr3 134534148 134534314 -25065469 - B2_Mm2 SINE B2 -1 194 8 4 1611 366 23 0 0 chr3 134534470 134534513 -25065270 + (TTTA)n Simple_repeat Simple_repeat 3 45 0 5 1611 24 32 0 0 chr3 134535115 134535146 -25064637 + AT_rich Low_complexity Low_complexity 1 31 0 5 1611 1062 144 0 0 chr3 134535819 134535999 -25063784 + (TTC)n Simple_repeat Simple_repeat 1 180 0 5 1611 24 0 0 0 chr3 134537429 134537453 -25062330 + AT_rich Low_complexity Low_complexity 1 24 0 5 1611 601 100 9 9 chr3 134537473 134537584 -25062199 - L1_Mus4 LINE L1 -2 6634 6524 5 1611 596 243 0 9 chr3 134539017 134539125 -25060658 - PB1D9 SINE Alu -1 119 13 5 1611 613 201 0 7 chr3 134539814 134539947 -25059836 - Lx9 LINE L1 -1 7643 7511 5 1611 450 0 0 0 chr3 134539947 134539997 -25059786 + (TG)n Simple_repeat Simple_repeat 2 51 0 5 1611 613 141 36 0 chr3 134539997 134540081 -25059702 - Lx9 LINE L1 -134 7510 7388 5 1611 1738 279 116 36 chr3 134540470 134541358 -25058425 - Lx8 LINE L1 -40 7433 6475 5 1611 1082 187 126 17 chr3 134541360 134541599 -25058184 + ORR1B1 LTR MaLR 3 267 -127 5 1611 269 195 76 54 chr3 134541679 134541771 -25058012 + RLTR25B LTR ERVK 409 502 -526 6 1611 702 167 8 0 chr3 134541694 134541814 -25057969 + B1_Mur4 SINE Alu 30 150 0 6 1611 496 274 195 6 chr3 134541830 134541999 -25057784 + B3 SINE B2 1 201 -15 6 1611 312 94 0 0 chr3 134542040 134542093 -25057690 + (TCTG)n Simple_repeat Simple_repeat 2 54 0 6 1611 1856 114 40 22 chr3 134542093 134542411 -25057372 - IAPEY_LTR LTR ERVK -1 384 60 6 1611 477 0 0 0 chr3 134542411 134542464 -25057319 + (TG)n Simple_repeat Simple_repeat 1 53 0 6 1611 335 311 0 86 chr3 134542512 134542628 -25057155 - B3 SINE B2 -72 144 39 6 1611 339 25 0 0 chr3 134542633 134542673 -25057110 + (TC)n Simple_repeat Simple_repeat 2 41 0 6 1611 999 221 128 7 chr3 134542678 134542960 -25056823 - Lx6 LINE L1 -9 7451 7136 6 1611 40 59 0 0 chr3 134543049 134543117 -25056666 + AT_rich Low_complexity Low_complexity 1 68 0 6 1611 945 76 83 0 chr3 134543128 134543273 -25056510 - L1_Mus2 LINE L1 -5 6561 6405 7 1611 1139 84 0 0 chr3 134543752 134543895 -25055888 + B1_Mus1 SINE Alu 1 143 -5 7 1611 33802 35 1 0 chr3 134543901 134550391 -25049392 + L1Md_T LINE L1 1 5589 -297 7 1611 9005 6 0 0 chr3 134550391 134551387 -25048396 + L1Md_T LINE L1 5590 6585 0 7 1611 518 89 11 0 chr3 134551390 134551480 -25048303 + (CAAAA)n Simple_repeat Simple_repeat 2 92 0 7 1611 236 310 0 45 chr3 134551503 134551591 -25048192 - MIRc SINE MIR -71 197 114 7 1611 1783 190 67 56 chr3 134551706 134552096 -25047687 + ORR1B1 LTR MaLR 1 394 0 7 1611 1030 269 93 12 chr3 134552111 134552607 -25047176 - L1MA7 LINE L1 -57 6234 5699 7 1611 186 275 0 0 chr3 134552646 134552715 -25047068 + (TG)n Simple_repeat Simple_repeat 2 70 0 7 1611 811 172 79 22 chr3 134553090 134553268 -25046515 - Lx2 LINE L1 -97 6900 6713 7 1611 203 156 0 0 chr3 134553316 134553348 -25046435 + (CA)n Simple_repeat Simple_repeat 2 33 0 7 1611 366 180 20 0 chr3 134553401 134553501 -25046282 + Lx2B LINE L1 6896 6997 -3 8 1611 303 271 49 144 chr3 134553530 134553857 -25045926 + L1M3 LINE L1 4878 5173 -967 8 1611 191 215 0 15 chr3 134554092 134554158 -25045625 + GA-rich Low_complexity Low_complexity 2 66 0 8 1611 1786 205 105 84 chr3 134555304 134555980 -25043803 - RMER6C LTR ERVK 0 690 1 8 1611 4207 185 35 4 chr3 134556150 134556969 -25042814 - Lx2B LINE L1 -13 6987 6143 8 1611 524 250 77 82 chr3 134556994 134557177 -25042606 + B3A SINE B2 1 182 -16 8 1611 856 227 43 0 chr3 134557208 134557415 -25042368 + B3 SINE B2 1 216 0 8 1611 28 0 0 0 chr3 134557436 134557464 -25042319 + AT_rich Low_complexity Low_complexity 1 28 0 8 1611 391 63 0 0 chr3 134557747 134557810 -25041973 - Lx LINE L1 0 6654 6592 8 1611 333 298 125 35 chr3 134558008 134558276 -25041507 - B4A SINE B4 -11 281 10 8 1611 31725 89 7 4 chr3 134558882 134563862 -25035921 + L1Md_F2 LINE L1 590 5585 -298 9 1611 7684 62 3 9 chr3 134563863 134564445 -25035338 + L1Md_F2 LINE L1 5587 6170 -412 9 1611 4417 14 0 0 chr3 134564445 134564938 -25034845 + MT2_Mm LTR ERVL 1 493 0 9 1611 7684 62 3 9 chr3 134564938 134565348 -25034435 + L1Md_F2 LINE L1 6171 6573 -9 9 1611 402 21 0 0 chr3 134566973 134567020 -25032763 + (TG)n Simple_repeat Simple_repeat 2 48 0 9 1611 514 28 14 14 chr3 134567047 134567120 -25032663 + (TAGA)n Simple_repeat Simple_repeat 2 74 0 9 1611 664 275 86 31 chr3 134567169 134567462 -25032321 - MER2 DNA MER2_type -1 344 24 9 1611 317 24 0 23 chr3 134567496 134567539 -25032244 + (TA)n Simple_repeat Simple_repeat 2 43 0 9 1611 213 65 0 0 chr3 134567598 134567629 -25032154 + (ATTG)n Simple_repeat Simple_repeat 3 33 0 9 1611 538 336 23 27 chr3 134567631 134567891 -25031892 - MER2 DNA MER2_type -5 340 82 9 1611 390 321 190 0 chr3 134568506 134568643 -25031140 + B3A SINE B2 20 182 -16 9 1611 315 0 0 0 chr3 134568704 134568739 -25031044 + (TTTTTG)n Simple_repeat Simple_repeat 6 40 0 9 1611 1198 74 0 0 chr3 134568739 134568887 -25030896 - B1_Mus1 SINE Alu 0 148 1 9 1611 223 345 88 110 chr3 134570147 134570694 -25029089 + L2 LINE L2 2276 2810 -609 1 1611 24 0 0 0 chr3 134571045 134571069 -25028714 + AT_rich Low_complexity Low_complexity 1 24 0 1 1611 258 333 0 32 chr3 134571490 134571583 -25028200 - L2c LINE L2 -5 3382 3293 1 1611 512 309 129 18 chr3 134571675 134572032 -25027751 + L1_Mur2 LINE L1 5386 5789 -88 1 1611 819 299 82 30 chr3 134572164 134572605 -25027178 - Lx8 LINE L1 -5 7468 7005 1 1611 305 290 65 9 chr3 134572616 134572724 -25027059 + Lx7 LINE L1 6802 6915 -781 1 1611 789 221 71 15 chr3 134572725 134572923 -25026860 + B3 SINE B2 3 211 -5 1 1611 2474 265 92 62 chr3 134573559 134574020 -25025763 - Lx9 LINE L1 -124 7520 7030 1 1611 336 127 0 0 chr3 134574020 134574075 -25025708 + (TG)n Simple_repeat Simple_repeat 2 56 0 1 1611 2474 265 92 62 chr3 134574075 134574760 -25025023 - Lx9 LINE L1 -615 7029 6339 1 1611 3136 308 99 27 chr3 134574783 134577194 -25022589 - L1M2 LINE L1 -1092 5051 2467 1 1611 304 148 115 0 chr3 134577197 134577258 -25022525 + B1_Mur1 SINE Alu 81 148 -1 1 1611 356 332 132 14 chr3 134577258 134577452 -25022331 - L1_Rod LINE L1 -3371 2476 2240 1 1611 3352 169 40 7 chr3 134577452 134578058 -25021725 - Lx2B LINE L1 -13 6987 6362 1 1611 356 332 132 14 chr3 134578058 134578220 -25021563 - L1_Rod LINE L1 -3608 2239 2079 1 1611 336 318 122 27 chr3 134578339 134578750 -25021033 - L1_Mur3 LINE L1 -3890 1990 1541 1 1611 807 363 82 9 chr3 134579465 134579902 -25019881 + Lx8 LINE L1 6826 7294 -179 1 1611 180 273 0 0 chr3 134580829 134580895 -25018888 + (CATATA)n Simple_repeat Simple_repeat 2 67 0 1 1611 834 290 66 25 chr3 134581110 134581428 -25018355 + RMER15 LTR ERVL 211 541 -34 1 1611 261 204 19 0 chr3 134581466 134581520 -25018263 + RMER15 LTR ERVL 521 575 0 1 1611 346 318 11 0 chr3 134581521 134581633 -25018150 - MLT1B-int LTR MaLR -207 1528 1437 1 1611 854 320 77 40 chr3 134582133 134582638 -25017145 - MLT1B-int LTR MaLR -847 524 1 1 1611 556 314 88 38 chr3 134582648 134582989 -25016794 - MLT1B LTR MaLR -8 382 25 1 1611 632 285 20 1 chr3 134584155 134584315 -25015468 + RSINE1 SINE B4 2 165 0 1 1611 1097 58 23 0 chr3 134584326 134584497 -25015286 + (TAGA)n Simple_repeat Simple_repeat 4 178 0 1 1611 401 187 28 9 chr3 134584681 134584789 -25014994 - Lx9 LINE L1 -54 7590 7481 1 1611 587 262 25 0 chr3 134584925 134585047 -25014736 + RSINE1 SINE B4 8 132 -33 1 1611 387 0 0 0 chr3 134585049 134585092 -25014691 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 1611 204 411 21 14 chr3 134586101 134586244 -25013539 - L2a LINE L2 -282 3144 3001 1 1611 236 30 30 0 chr3 134586663 134586696 -25013087 + (TTAA)n Simple_repeat Simple_repeat 3 36 0 1 1611 764 279 68 39 chr3 134587481 134587761 -25012022 - RMER15 LTR ERVL -5 570 283 1 1611 567 239 26 0 chr3 134587936 134588049 -25011734 - RMER15-int LTR ERVL -2 4997 4882 1 1611 218 164 0 40 chr3 134588056 134588112 -25011671 - B3A SINE B2 -108 87 36 1 1611 4233 96 70 0 chr3 134588223 134588322 -25011461 - Lx2 LINE L1 -6 6991 6886 1 1611 414 0 0 0 chr3 134588322 134588368 -25011415 + (CA)n Simple_repeat Simple_repeat 2 47 0 1 1611 4233 96 70 0 chr3 134588368 134588881 -25010902 - Lx2 LINE L1 -112 6885 6337 1 1611 980 329 49 14 chr3 134588881 134589229 -25010554 - RMER15-int LTR ERVL -1735 3264 2905 1 1611 1450 319 73 17 chr3 134589290 134589932 -25009851 - RMER15-int LTR ERVL -2200 2799 2122 1 1611 331 220 30 113 chr3 134590074 134590207 -25009576 - RMER15-int LTR ERVL -3156 1843 1722 1 1611 243 0 0 0 chr3 134590553 134590580 -25009203 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 1611 215 152 0 33 chr3 134590622 134590683 -25009100 + (TTTG)n Simple_repeat Simple_repeat 2 60 0 1 1611 654 355 82 43 chr3 134590821 134591380 -25008403 - RMER15-int LTR ERVL -4415 584 4 1 1611 520 285 102 20 chr3 134591383 134591580 -25008203 - RMER15 LTR ERVL 0 575 363 1 1611 266 239 40 71 chr3 134591766 134591865 -25007918 - RMER15 LTR ERVL -479 96 1 1 1611 257 172 16 0 chr3 134592582 134592646 -25007137 + (TA)n Simple_repeat Simple_repeat 2 66 0 1 1611 240 111 0 0 chr3 134592646 134592682 -25007101 + (TTAG)n Simple_repeat Simple_repeat 1 36 0 1 1611 393 326 34 63 chr3 134593198 134593225 -25006558 + CYRA11_Mm Unknown Y-chromosome 154 384 -232 1 1611 1235 144 28 9 chr3 134593225 134593436 -25006347 - URR1B DNA MER1_type -8 217 3 1 1611 337 200 51 39 chr3 134593714 134593792 -25005991 + PB1D10 SINE Alu 37 115 -2 1 1611 290 111 0 0 chr3 134594511 134594556 -25005227 - Lx4A LINE L1 -1110 5948 5904 1 1611 1505 171 14 196 chr3 134594554 134595049 -25004734 + Lx4A LINE L1 6605 7009 -49 1 1611 5132 146 18 18 chr3 134600185 134601086 -24998697 + Lx4B LINE L1 6152 7052 -6 1 1611 520 287 72 59 chr3 134601086 134601390 -24998393 + L1MB8 LINE L1 5830 6137 -41 1 1611 481 305 79 0 chr3 134601721 134601885 -24997898 + B3A SINE B2 3 179 -19 1 1611 341 368 112 52 chr3 134601923 134602407 -24997376 - MLT1N2 LTR MaLR -9 553 41 1 1611 227 174 99 28 chr3 134603080 134603151 -24996632 + L1MA7 LINE L1 6211 6286 -5 1 1611 1916 43 0 0 chr3 134603152 134603384 -24996399 + L1Md_T LINE L1 6351 6582 0 1 1611 286 48 0 45 chr3 134603387 134603431 -24996352 + B1_Mur4 SINE Alu 108 149 -1 1 1611 28 29 0 0 chr3 134603516 134603551 -24996232 + AT_rich Low_complexity Low_complexity 1 35 0 1 1611 4120 163 63 4 chr3 134604017 134604763 -24995020 - Lx2B LINE L1 -4 6996 6207 1 1611 1097 88 0 0 chr3 134604892 134605040 -24994743 + B1_Mus1 SINE Alu 1 148 0 1 1611 800 169 219 42 chr3 134606533 134606725 -24993058 + URR1A DNA MER1_type 1 226 0 1 1611 720 126 0 0 chr3 134607362 134607481 -24992302 + (TGGA)n Simple_repeat Simple_repeat 3 121 0 1 1611 270 0 0 0 chr3 134607839 134607869 -24991914 + (CA)n Simple_repeat Simple_repeat 1 30 0 1 1611 729 148 209 0 chr3 134608420 134608630 -24991153 - Lx9 LINE L1 -1 7643 7390 1 1611 228 67 0 0 chr3 134608961 134608991 -24990792 + (TTTTA)n Simple_repeat Simple_repeat 1 30 0 1 1611 198 376 0 0 chr3 134609823 134609908 -24989875 - MIR SINE MIR -16 246 162 1 1611 183 284 95 0 chr3 134609883 134609957 -24989826 - L3 LINE CR1 -72 4417 4337 1 1612 828 228 5 5 chr3 134611038 134611223 -24988560 + L1VL4 LINE L1 544 728 -5574 1 1612 1576 87 0 14 chr3 134611230 134611451 -24988332 - L1_Mus1 LINE L1 -2 6565 6348 1 1612 730 303 114 41 chr3 134611469 134611985 -24987798 + L1MC1 LINE L1 5693 6246 -87 1 1612 495 277 20 21 chr3 134612279 134612446 -24987337 - Lx5 LINE L1 -452 6598 6455 1 1612 1228 287 35 12 chr3 134612598 134612940 -24986843 - MTD LTR MaLR -31 388 39 1 1612 707 336 20 20 chr3 134612947 134613196 -24986587 + MTEa LTR MaLR 124 372 -7 1 1612 1370 330 56 75 chr3 134613213 134613836 -24985947 + MTE-int LTR MaLR 962 1572 -8 1 1612 288 232 0 0 chr3 134614203 134614302 -24985481 + (TA)n Simple_repeat Simple_repeat 1 99 0 1 1612 29108 80 5 1 chr3 134614631 134618651 -24981132 + L1Md_F2 LINE L1 1548 5584 -299 1 1612 7035 91 0 30 chr3 134618654 134619669 -24980114 + L1Md_F2 LINE L1 5588 6571 -11 1 1612 25168 139 23 6 chr3 134619703 134624867 -24974916 + L1_Mus4 LINE L1 1386 6629 -7 1 1612 1472 188 46 107 chr3 134624886 134625344 -24974439 + Lx9 LINE L1 7214 7643 -1 1 1612 1239 276 63 14 chr3 134625416 134625861 -24973922 + Lx8 LINE L1 6952 7418 -55 1 1612 23 33 0 0 chr3 134625953 134625983 -24973800 + AT_rich Low_complexity Low_complexity 1 30 0 1 1612 23 86 0 0 chr3 134628379 134628437 -24971346 + AT_rich Low_complexity Low_complexity 1 58 0 1 1612 704 161 8 0 chr3 134628678 134628796 -24970987 + ORR1A2 LTR MaLR 122 240 -87 1 1612 6049 87 45 39 chr3 134628842 134629765 -24970018 + RLTR13B3 LTR ERVK 1 929 0 1 1612 306 0 0 0 chr3 134631557 134631591 -24968192 + (TG)n Simple_repeat Simple_repeat 1 34 0 1 1612 242 261 15 0 chr3 134631820 134631885 -24967898 - tRNA-Ala-GCA tRNA tRNA -9 66 1 1 1612 400 258 0 11 chr3 134632149 134632243 -24967540 + Lx7 LINE L1 5896 5988 -1708 1 1612 306 164 0 0 chr3 134632353 134632408 -24967375 + (ATG)n Simple_repeat Simple_repeat 2 56 0 1 1612 729 289 63 30 chr3 134632418 134632689 -24967094 - B4A SINE B4 -12 280 1 1 1612 516 314 22 0 chr3 134633919 134634104 -24965679 + L1M3 LINE L1 5497 5685 -504 1 1612 243 188 0 0 chr3 134634145 134634193 -24965590 + T-rich Low_complexity Low_complexity 1 48 0 1 1612 252 240 70 31 chr3 134634193 134634322 -24965461 - L1M4 LINE L1 -2451 3695 3562 1 1612 297 172 17 0 chr3 134634317 134634375 -24965408 + L1_Rod LINE L1 5158 5216 -631 1 1612 7922 49 12 1 chr3 134635556 134636541 -24963242 + L1Md_F2 LINE L1 5587 6582 0 1 1612 7522 16 0 0 chr3 134637410 134638266 -24961517 - L1Md_A LINE L1 0 6582 5727 1 1612 232 313 123 66 chr3 134638724 134638936 -24960847 + ORR1E LTR MaLR 14 237 -122 1 1612 1247 247 13 48 chr3 134639335 134639727 -24960056 - MTE2a LTR MaLR 0 379 2 1 1612 231 250 36 14 chr3 134639743 134639852 -24959931 + L1MA5 LINE L1 6168 6281 -19 1 1612 243 333 0 0 chr3 134640518 134640584 -24959199 - ID4 SINE ID -16 67 2 1 1612 912 286 28 18 chr3 134641898 134642183 -24957600 + B4A SINE B4 1 288 -4 1 1612 180 111 0 0 chr3 134642759 134642786 -24956997 + (CACG)n Simple_repeat Simple_repeat 1 27 0 1 1612 288 0 0 0 chr3 134643573 134643605 -24956178 + (CAAT)n Simple_repeat Simple_repeat 1 32 0 1 1612 578 263 53 36 chr3 134645253 134645478 -24954305 - MER67C LTR ERV1 -347 364 136 1 1612 852 196 77 49 chr3 134645503 134645703 -24954080 - Lx9 LINE L1 -2 7642 7425 1 1612 1557 198 111 14 chr3 134645703 134646062 -24953721 - ORR1B1 LTR MaLR 0 394 1 1 1612 852 196 77 49 chr3 134646062 134646146 -24953637 - Lx9 LINE L1 -220 7424 7350 1 1612 459 305 19 25 chr3 134646777 134646935 -24952848 - RSINE1 SINE B4 -8 157 1 1 1612 186 191 0 0 chr3 134647395 134647437 -24952346 + C-rich Low_complexity Low_complexity 2 43 0 1 1612 1303 297 36 31 chr3 134647971 134648392 -24951391 + MER31A LTR ERV1 17 439 -46 1 1612 21 0 0 0 chr3 134648685 134648706 -24951077 + AT_rich Low_complexity Low_complexity 1 21 0 1 1612 351 136 0 0 chr3 134648751 134648810 -24950973 + (TA)n Simple_repeat Simple_repeat 1 59 0 1 1612 221 0 0 33 chr3 134649906 134649936 -24949847 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1 1612 454 292 104 104 chr3 134650025 134650334 -24949449 + MLT1A LTR MaLR 4 312 -62 1 1612 593 294 44 83 chr3 134650394 134650625 -24949158 + MLT1D LTR MaLR 162 497 -8 1 1612 464 273 112 0 chr3 134650732 134650919 -24948864 + L1MA7 LINE L1 5615 5822 -490 1 1612 273 302 57 34 chr3 134650951 134651126 -24948657 - RLTR12B LTR ERVK -34 494 316 2 1612 781 272 30 60 chr3 134651211 134651477 -24948306 - RLTR11B LTR ERVK -195 258 1 2 1612 684 285 95 7 chr3 134651482 134651786 -24947997 + L1MA7 LINE L1 5830 6160 -131 1 1612 685 227 60 35 chr3 134652028 134652229 -24947554 + B3 SINE B2 4 209 -7 2 1612 6142 155 44 17 chr3 134652253 134653391 -24946392 - Lx3C LINE L1 -2 6974 5806 2 1612 262 314 76 99 chr3 134653727 134653989 -24945794 - Lx8 LINE L1 -248 7225 6970 2 1612 257 297 29 10 chr3 134654063 134654165 -24945618 + L1_Rod LINE L1 5046 5149 -698 2 1612 1234 109 11 5 chr3 134654334 134654518 -24945265 - B2_Mm2 SINE B2 -10 185 1 2 1612 254 322 160 29 chr3 134654691 134654972 -24944811 + L2a LINE L2 3061 3378 -48 2 1612 537 66 33 0 chr3 134655673 134655764 -24944019 + (TAGA)n Simple_repeat Simple_repeat 4 97 0 2 1612 1764 228 67 31 chr3 134655975 134656364 -24943419 + MTD LTR MaLR 3 405 -14 2 1612 660 103 27 7 chr3 134657679 134657825 -24941958 + (TCTCTG)n Simple_repeat Simple_repeat 2 150 0 2 1612 26 0 0 0 chr3 134659196 134659222 -24940561 + AT_rich Low_complexity Low_complexity 1 26 0 2 1612 262 326 72 39 chr3 134659501 134659654 -24940129 - RMER20B LTR ERVK 0 516 359 2 1612 543 243 24 84 chr3 134659778 134659944 -24939839 - RMER20B LTR ERVK -471 156 1 2 1612 471 285 50 0 chr3 134661387 134661524 -24938259 + B1F SINE Alu 1 143 -6 2 1612 663 300 82 11 chr3 134661534 134661716 -24938067 + B4 SINE B4 30 224 -68 2 1612 192 40 0 0 chr3 134661939 134661964 -24937819 + (T)n Simple_repeat Simple_repeat 1 25 0 2 1612 3026 200 55 3 chr3 134662415 134662982 -24936801 - RMER1B Other Other -15 1051 456 2 1612 6499 41 16 1 chr3 134663119 134663922 -24935861 + L1Md_F2 LINE L1 5766 6580 -2 2 1612 661 362 76 18 chr3 134664658 134665527 -24934256 + L1MA4 LINE L1 2129 3047 -3096 2 1612 3364 10 0 15 chr3 134665524 134665918 -24933865 + L1Md_A LINE L1 5199 5586 -297 2 1612 8837 12 0 0 chr3 134665918 134666956 -24932827 + L1Md_A LINE L1 5587 6582 0 2 1612 412 239 65 0 chr3 134666966 134667154 -24932629 + L1MA4 LINE L1 3042 3241 -2905 2 1612 260 283 0 35 chr3 134667209 134667319 -24932464 + L1MA4 LINE L1 4665 4772 -1371 2 1612 715 293 26 55 chr3 134667384 134667727 -24932056 + L1MA4 LINE L1 4787 5119 -1024 2 1612 285 217 37 9 chr3 134667867 134667974 -24931809 + L1M5 LINE L1 5322 5431 -733 2 1612 452 235 35 0 chr3 134667982 134668067 -24931716 + B3A SINE B2 1 88 -110 2 1612 542 316 13 22 chr3 134668259 134668693 -24931090 + L1MA4 LINE L1 5479 5907 -393 2 1612 180 362 85 23 chr3 134669033 134669163 -24930620 - L2 LINE L2 -955 2464 2327 2 1612 522 30 0 0 chr3 134669599 134669666 -24930117 + L1_Mus2 LINE L1 6500 6566 0 2 1612 1149 139 119 0 chr3 134669751 134669953 -24929830 - URR1A DNA MER1_type 0 226 1 2 1612 297 0 0 0 chr3 134670416 134670449 -24929334 + (TC)n Simple_repeat Simple_repeat 2 34 0 2 1612 360 64 0 0 chr3 134670449 134670495 -24929288 + (TG)n Simple_repeat Simple_repeat 2 48 0 2 1612 295 258 190 8 chr3 134670498 134670619 -24929164 + L2a LINE L2 3282 3424 -2 2 1612 1512 210 29 37 chr3 134670835 134671186 -24928597 + MTE2b LTR MaLR 32 379 0 2 1612 25 0 0 0 chr3 134671331 134671356 -24928427 + AT_rich Low_complexity Low_complexity 1 25 0 2 1612 966 258 64 45 chr3 134671818 134672131 -24927652 - RMER15 LTR ERVL -12 563 245 2 1612 183 184 0 0 chr3 134672766 134672804 -24926979 + (TG)n Simple_repeat Simple_repeat 1 38 0 2 1612 618 316 72 9 chr3 134672814 134673233 -24926550 + L1MB1 LINE L1 5445 5889 -300 2 1612 186 43 0 0 chr3 134673234 134673257 -24926526 + (TG)n Simple_repeat Simple_repeat 2 24 0 2 1612 657 0 0 0 chr3 134673472 134673545 -24926238 + (GTTTG)n Simple_repeat Simple_repeat 2 74 0 2 1612 958 239 25 0 chr3 134673575 134673772 -24926011 + B3 SINE B2 10 211 -5 2 1612 28 71 0 0 chr3 134673772 134673828 -24925955 + AT_rich Low_complexity Low_complexity 1 56 0 2 1612 3876 111 97 8 chr3 134673856 134674463 -24925320 + Lx4B LINE L1 6391 7051 -7 2 1612 22 56 0 0 chr3 134674661 134674697 -24925086 + AT_rich Low_complexity Low_complexity 1 36 0 2 1612 8332 14 2 0 chr3 134675213 134676249 -24923534 - L1Md_A LINE L1 0 6582 5544 2 1612 372 342 64 6 chr3 134676516 134676672 -24923111 - MIR SINE MIR -90 172 8 2 1612 1087 163 113 5 chr3 134676687 134676890 -24922893 + URR1A DNA MER1_type 1 225 -1 2 1612 184 302 57 0 chr3 134677445 134677498 -24922285 - MIRb SINE MIR -34 234 179 2 1612 305 88 14 56 chr3 134678497 134678569 -24921214 - L1Md_F2 LINE L1 -1 6581 6513 2 1612 287 338 67 8 chr3 134678626 134678760 -24921023 + MIR3 SINE MIR 62 203 -5 2 1612 518 0 16 0 chr3 134679450 134679512 -24920271 + (TG)n Simple_repeat Simple_repeat 2 64 0 2 1612 306 0 0 0 chr3 134679514 134679548 -24920235 + (GA)n Simple_repeat Simple_repeat 1 34 0 2 1612 308 224 72 18 chr3 134679888 134679995 -24919788 + B3A SINE B2 1 121 -72 2 1612 4687 129 58 12 chr3 134680373 134681152 -24918631 + Lx LINE L1 5835 6649 -5 2 1612 2234 132 11 6 chr3 134681293 134681650 -24918133 + RLTR15 LTR ERVK 1 359 0 2 1612 1371 253 62 24 chr3 134681821 134682157 -24917626 - ORR1E LTR MaLR -7 352 4 2 1612 254 31 109 0 chr3 134683520 134683584 -24916199 + (TTTC)n Simple_repeat Simple_repeat 2 72 0 2 1612 660 238 40 6 chr3 134683863 134684036 -24915747 + B3A SINE B2 2 180 -18 2 1612 712 274 24 48 chr3 134684082 134684289 -24915494 - RMER12 LTR ERVK 0 1322 1121 2 1612 450 294 31 51 chr3 134684598 134684774 -24915009 - RLTR22_Mur LTR ERVK -126 1196 1040 2 1612 7602 73 14 0 chr3 134684787 134686549 -24913234 - L1_Mus1 LINE L1 -1 6566 4774 2 1612 1549 253 50 75 chr3 134686549 134686726 -24913057 - RLTR22_Mur LTR ERVK -329 1519 1338 2 1612 315 0 0 0 chr3 134686726 134686761 -24913022 + (CA)n Simple_repeat Simple_repeat 1 35 0 2 1612 1549 253 50 75 chr3 134686761 134686792 -24912991 - RLTR22_Mur LTR ERVK -511 1337 1307 2 1612 447 19 0 0 chr3 134686792 134686844 -24912939 + (TA)n Simple_repeat Simple_repeat 1 52 0 2 1612 369 0 0 0 chr3 134686844 134686884 -24912899 + (GA)n Simple_repeat Simple_repeat 2 42 0 2 1612 2296 235 55 98 chr3 134686884 134688012 -24911771 - RLTR22_Mur LTR ERVK -542 1306 1 2 1612 351 0 0 0 chr3 134688100 134688139 -24911644 + (TG)n Simple_repeat Simple_repeat 1 39 0 2 1612 27 0 0 0 chr3 134688782 134688809 -24910974 + AT_rich Low_complexity Low_complexity 1 27 0 2 1612 634 284 53 4 chr3 134689794 134690041 -24909742 - Lx7 LINE L1 -1827 5869 5611 2 1612 347 288 27 12 chr3 134690307 134690495 -24909288 - Lx7 LINE L1 -694 5618 5399 2 1612 23 0 0 0 chr3 134690495 134690518 -24909265 + AT_rich Low_complexity Low_complexity 1 23 0 2 1612 189 0 0 0 chr3 134690601 134690622 -24909161 + (A)n Simple_repeat Simple_repeat 1 21 0 2 1612 276 30 0 0 chr3 134691044 134691077 -24908706 + (T)n Simple_repeat Simple_repeat 1 33 0 2 1612 252 298 0 23 chr3 134691227 134691313 -24908470 + L1M3 LINE L1 4643 4726 -1417 2 1612 743 263 59 52 chr3 134691437 134691564 -24908219 - RMER13A LTR ERVK -406 454 326 2 1612 4029 74 20 11 chr3 134691564 134692125 -24907658 + L1_Mus3 LINE L1 6073 6638 0 2 1612 743 263 59 52 chr3 134692125 134692286 -24907497 - RMER13A LTR ERVK -535 325 164 2 1612 568 298 141 28 chr3 134692384 134692896 -24906887 + L1M3 LINE L1 4666 5223 -917 2 1612 275 98 0 0 chr3 134693230 134693271 -24906512 + B1_Mur2 SINE Alu 105 145 -4 2 1612 257 122 0 68 chr3 134693294 134693338 -24906445 + tRNA-Lys-AAG tRNA tRNA 2 42 -34 2 1612 1368 157 7 97 chr3 134694522 134694832 -24904951 - RLTR28 LTR ERVL 0 524 243 2 1612 210 37 0 0 chr3 134694843 134694870 -24904913 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2 1612 420 175 0 0 chr3 134694893 134694956 -24904827 - B1_Mur4 SINE Alu -87 63 1 2 1612 1393 152 33 84 chr3 134694956 134695229 -24904554 - RLTR28 LTR ERVL -265 259 1 2 1612 754 232 129 53 chr3 134695648 134695877 -24903906 + RMER15 LTR ERVL 292 534 -41 2 1612 378 0 0 0 chr3 134695877 134695919 -24903864 + (TC)n Simple_repeat Simple_repeat 2 43 0 2 1612 462 18 0 0 chr3 134695919 134695973 -24903810 + (TG)n Simple_repeat Simple_repeat 2 56 0 2 1612 754 232 129 53 chr3 134695973 134696006 -24903777 + RMER15 LTR ERVL 535 574 -1 2 1612 287 36 0 68 chr3 134697145 134697204 -24902579 - L1_Mus2 LINE L1 -2 6580 6523 2 1612 582 72 24 0 chr3 134697204 134697287 -24902496 + L1_Mm LINE L1 5293 5377 -506 2 1612 632 13 13 0 chr3 134698094 134698171 -24901612 + (GA)n Simple_repeat Simple_repeat 1 78 0 2 1612 2108 208 211 7 chr3 134698903 134699513 -24900270 + RMER19A LTR ERVK 1 735 -2 2 1612 403 250 17 35 chr3 134699675 134699791 -24899992 - PB1D7 SINE Alu -5 115 2 2 1612 288 308 38 25 chr3 134699879 134699959 -24899824 + ID4 SINE ID 1 81 -2 2 1612 473 0 18 0 chr3 134700644 134700701 -24899082 + (TG)n Simple_repeat Simple_repeat 2 59 0 2 1612 651 242 82 35 chr3 134700701 134700872 -24898911 + B3A SINE B2 5 183 -15 2 1612 298 339 0 92 chr3 134700918 134701038 -24898745 + RSINE1 SINE B4 57 165 0 2 1612 207 0 0 0 chr3 134701044 134701067 -24898716 + (CA)n Simple_repeat Simple_repeat 1 23 0 2 1612 1065 51 66 0 chr3 134702411 134702548 -24897235 + B1_Mm SINE Alu 2 147 0 2 1612 22 0 0 30 chr3 134702548 134702566 -24897217 + AT_rich Low_complexity Low_complexity 1 18 0 2 1612 198 0 0 0 chr3 134702566 134702588 -24897195 + (TTAA)n Simple_repeat Simple_repeat 3 24 0 2 1612 22 0 0 30 chr3 134702588 134702602 -24897181 + AT_rich Low_complexity Low_complexity 1 14 0 2 1612 553 337 72 42 chr3 134704449 134704808 -24894975 - MTEa LTR MaLR -9 370 1 2 1612 332 297 228 21 chr3 134705003 134705192 -24894591 - RMER15 LTR ERVL -12 563 336 2 1612 369 0 0 0 chr3 134706833 134706874 -24892909 + (CA)n Simple_repeat Simple_repeat 1 41 0 2 1612 468 0 0 0 chr3 134707944 134707996 -24891787 + (AGTAG)n Simple_repeat Simple_repeat 2 53 0 2 1612 1107 298 33 50 chr3 134707996 134708417 -24891366 + BGLII_B LTR ERVK 1 414 -27 2 1612 315 0 0 0 chr3 134708581 134708616 -24891167 + (A)n Simple_repeat Simple_repeat 1 35 0 2 1612 311 305 189 57 chr3 134708947 134709100 -24890683 + MLT1A LTR MaLR 25 168 -206 2 1612 432 0 0 0 chr3 134709100 134709148 -24890635 + (CA)n Simple_repeat Simple_repeat 1 48 0 2 1612 311 305 189 57 chr3 134709148 134709290 -24890493 + MLT1A LTR MaLR 169 359 -15 2 1612 468 0 0 0 chr3 134709383 134709435 -24890348 + (TG)n Simple_repeat Simple_repeat 2 53 0 2 1612 236 306 110 14 chr3 134710241 134710387 -24889396 - L1MA5 LINE L1 0 6300 6141 2 1612 3191 164 63 23 chr3 134710866 134711527 -24888256 - RMER6C LTR ERVK 0 690 3 3 1612 5291 161 21 71 chr3 134711529 134713086 -24886697 + Lx5 LINE L1 4682 6150 -900 3 1612 376 259 101 29 chr3 134713092 134713231 -24886552 + RLTR16 LTR ERVK 1 149 -356 3 1612 228 287 95 38 chr3 134713320 134713425 -24886358 + RLTR17 LTR ERVK 337 447 -245 3 1612 3841 172 95 14 chr3 134713524 134714321 -24885462 + Lx5 LINE L1 6143 7004 -46 3 1612 32 26 0 0 chr3 134714334 134714373 -24885410 + AT_rich Low_complexity Low_complexity 1 39 0 3 1612 232 120 20 20 chr3 134714536 134714587 -24885196 + GA-rich Low_complexity Low_complexity 2 52 0 3 1612 599 309 76 55 chr3 134715214 134715649 -24884134 + Lx8 LINE L1 6999 7442 -31 3 1612 26 30 0 0 chr3 134715657 134715690 -24884093 + AT_rich Low_complexity Low_complexity 1 33 0 3 1612 201 94 0 0 chr3 134716659 134716691 -24883092 + (TG)n Simple_repeat Simple_repeat 1 32 0 3 1612 376 276 13 0 chr3 134716739 134716815 -24882968 - RSINE1 SINE B4 -83 82 6 3 1612 1031 153 179 31 chr3 134717098 134717294 -24882489 + URR1B DNA MER1_type 1 225 0 3 1612 1388 272 21 49 chr3 134717321 134717753 -24882030 - Lx8 LINE L1 -355 7118 6699 3 1612 441 0 0 0 chr3 134717843 134717892 -24881891 + (TG)n Simple_repeat Simple_repeat 2 50 0 3 1612 3005 201 80 11 chr3 134717968 134718670 -24881113 - RMER1A Other Other -2 1028 349 3 1612 290 192 125 107 chr3 134718793 134718900 -24880883 - Lx8 LINE L1 -376 5936 5812 3 1612 279 0 0 0 chr3 134718900 134718931 -24880852 + (TGG)n Simple_repeat Simple_repeat 1 31 0 3 1612 324 64 0 0 chr3 134718932 134718979 -24880804 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 3 1612 1200 29 0 0 chr3 134718979 134719117 -24880666 - B1_Mm SINE Alu -8 139 2 3 1612 238 191 124 124 chr3 134719117 134719183 -24880600 - Lx8 LINE L1 -459 5853 5777 3 1612 3312 171 3 5 chr3 134719209 134719836 -24879947 + L1Md_F LINE L1 311 936 -5680 3 1612 472 202 0 116 chr3 134719836 134719854 -24879929 + MT2B LTR ERVL 151 153 -448 3 1612 965 73 0 0 chr3 134719854 134719978 -24879805 + B1_Mm SINE Alu 2 125 -22 3 1612 3143 8 3 0 chr3 134719982 134720348 -24879435 - MT2_Mm LTR ERVL -126 367 1 3 1612 240 224 95 95 chr3 134720348 134720404 -24879379 - ORR1A3-int LTR MaLR -1350 613 558 3 1612 390 167 46 35 chr3 134720386 134720473 -24879310 - ORR1A3-int LTR MaLR -1323 640 553 3 1612 26530 81 7 3 chr3 134720523 134725148 -24874635 + L1Md_F LINE L1 964 5587 -296 3 1612 6702 91 34 11 chr3 134725148 134726109 -24873674 + L1Md_F2 LINE L1 5588 6570 -12 3 1612 1265 188 187 3 chr3 134726333 134726643 -24873140 - ORR1D1 LTR MaLR -7 367 1 3 1612 567 43 0 0 chr3 134726683 134726753 -24873030 + (TTG)n Simple_repeat Simple_repeat 2 71 0 3 1612 1376 204 96 102 chr3 134726792 134727261 -24872522 + RMER4A LTR ERVK 1 466 0 3 1612 769 110 16 0 chr3 134727296 134727423 -24872360 + BC1_Mm scRNA scRNA 1 129 -23 3 1612 456 104 0 0 chr3 134727423 134727490 -24872293 + (A)n Simple_repeat Simple_repeat 1 67 0 3 1612 619 316 7 0 chr3 134727491 134727630 -24872153 - ID_B1 SINE B4 -76 148 9 3 1612 483 350 84 75 chr3 134727860 134728127 -24871656 + MLT1C LTR MaLR 111 388 -79 3 1612 1134 188 9 9 chr3 134728127 134728352 -24871431 - URR1A DNA MER1_type 0 226 2 3 1612 483 350 84 75 chr3 134728352 134728430 -24871353 + MLT1C LTR MaLR 389 459 -8 3 1612 1427 261 32 29 chr3 134729878 134729994 -24869789 - L1_Mur3 LINE L1 -2283 3597 3473 3 1612 446 0 19 0 chr3 134729994 134730048 -24869735 + (TTTTG)n Simple_repeat Simple_repeat 4 58 0 3 1612 1427 261 32 29 chr3 134730048 134730370 -24869413 - L1_Mur3 LINE L1 -2408 3472 3151 3 1612 752 145 27 61 chr3 134730370 134730517 -24869266 - B1_Mur4 SINE Alu -8 142 1 3 1612 1427 261 32 29 chr3 134730517 134730725 -24869058 - L1_Mur3 LINE L1 -2730 3150 2948 3 1612 858 220 0 0 chr3 134730783 134730924 -24868859 + B1_Mur2 SINE Alu 1 141 -8 3 1612 1954 226 43 5 chr3 134730929 134731465 -24868318 + Lx7 LINE L1 5357 5909 -1787 3 1612 1773 144 111 12 chr3 134731608 134731952 -24867831 - ORR1C2 LTR MaLR 0 384 7 3 1612 1265 315 53 31 chr3 134731959 134732641 -24867142 + Lx7 LINE L1 6091 6787 -909 3 1612 13702 181 30 100 chr3 134732664 134738379 -24861404 - L1VL2 LINE L1 -2 5881 578 3 1612 843 308 72 10 chr3 134738382 134738909 -24860874 - L1M2 LINE L1 -814 5489 4875 3 1612 326 113 29 101 chr3 134739806 134739832 -24859951 + B1_Mur4 SINE Alu 44 68 -82 3 1612 432 0 0 0 chr3 134739832 134739880 -24859903 + (TG)n Simple_repeat Simple_repeat 2 49 0 3 1612 338 71 0 0 chr3 134739880 134739922 -24859861 + B1_Mus2 SINE Alu 63 104 -43 3 1612 180 0 0 0 chr3 134739926 134739946 -24859837 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 3 1612 366 284 0 40 chr3 134740060 134740159 -24859624 + PB1D10 SINE Alu 10 104 -13 3 1612 477 0 0 0 chr3 134740159 134740212 -24859571 + (ATG)n Simple_repeat Simple_repeat 1 53 0 3 1612 253 313 14 78 chr3 134740671 134740813 -24858970 + L2a LINE L2 3247 3379 -47 3 1612 510 284 110 42 chr3 134741102 134741293 -24858490 + MLT2B2 LTR ERVL 6 209 -306 3 1613 5628 108 62 43 chr3 134742039 134742816 -24856967 + RMER17B LTR ERVK 1 787 -171 3 1613 264 59 0 0 chr3 134742816 134742850 -24856933 + (CCA)n Simple_repeat Simple_repeat 2 35 0 3 1613 5628 108 62 43 chr3 134742850 134743010 -24856773 + RMER17B LTR ERVK 788 955 -3 3 1613 190 318 178 0 chr3 134743175 134743304 -24856479 + L2b LINE L2 3000 3151 -224 3 1613 21 0 0 0 chr3 134743779 134743800 -24855983 + AT_rich Low_complexity Low_complexity 1 21 0 3 1613 328 308 11 11 chr3 134744568 134744660 -24855123 + B4A SINE B4 3 94 -198 3 1613 515 156 15 0 chr3 134744730 134744865 -24854918 + (CAGAGA)n Simple_repeat Simple_repeat 4 140 0 3 1613 262 344 10 30 chr3 134744865 134744964 -24854819 + ID_B1 SINE B4 121 217 -7 3 1613 2290 113 23 11 chr3 134745878 134746228 -24853555 + ORR1B1 LTR MaLR 41 394 0 3 1613 204 125 0 0 chr3 134746909 134746941 -24852842 + (GAA)n Simple_repeat Simple_repeat 2 33 0 3 1613 274 278 20 10 chr3 134747657 134747755 -24852028 + L1M3e LINE L1 48 146 -6884 3 1613 418 125 42 0 chr3 134748588 134748660 -24851123 - RLTR25B LTR ERVK 0 1028 954 3 1613 213 167 0 59 chr3 134748635 134748686 -24851097 - B2_Mm2 SINE B2 -145 50 3 3 1613 2373 98 14 32 chr3 134748686 134749056 -24850727 + Lx LINE L1 6280 6642 -12 3 1613 4532 140 143 2 chr3 134749349 134750180 -24849603 - RLTR25B LTR ERVK -57 971 24 3 1613 4224 189 33 89 chr3 134750181 134750923 -24848860 - RMER13A LTR ERVK 0 860 162 3 1613 3507 18 2 0 chr3 134750923 134751318 -24848465 + MTA_Mm LTR MaLR 1 396 0 3 1613 9257 24 11 3 chr3 134751318 134752407 -24847376 + MTA_Mm-int LTR MaLR 1 1098 0 3 1613 3479 23 2 0 chr3 134752407 134752802 -24846981 + MTA_Mm LTR MaLR 1 396 0 3 1613 4224 189 33 89 chr3 134752802 134752968 -24846815 - RMER13A LTR ERVK -699 161 3 3 1613 2236 261 87 22 chr3 134753342 134753811 -24845972 + Lx8 LINE L1 6229 6697 -776 3 1613 360 0 0 0 chr3 134753811 134753851 -24845932 + (TAA)n Simple_repeat Simple_repeat 3 42 0 3 1613 2236 261 87 22 chr3 134753851 134754166 -24845617 + Lx8 LINE L1 6698 7064 -409 3 1613 614 13 13 0 chr3 134754206 134754281 -24845502 + (TG)n Simple_repeat Simple_repeat 1 76 0 3 1613 4362 43 2 0 chr3 134755812 134756327 -24843456 + MURVY-LTR LTR ERV1 4 519 0 3 1613 1358 273 132 41 chr3 134756340 134756825 -24842958 - RMER15 LTR ERVL -18 557 29 3 1613 452 298 26 13 chr3 134757728 134757881 -24841902 - ID_B1 SINE B4 0 224 70 3 1613 22 88 0 0 chr3 134757914 134757971 -24841812 + AT_rich Low_complexity Low_complexity 1 57 0 3 1613 1786 83 12 4 chr3 134758091 134758344 -24841439 - L1_Mus3 LINE L1 -3 6635 6381 3 1613 2598 102 202 23 chr3 134758631 134759071 -24840712 - MURVY-LTR LTR ERV1 0 519 1 3 1613 20371 4 0 0 chr3 134759437 134761837 -24837946 + L1Md_A LINE L1 3187 5586 -297 3 1613 9093 1 0 0 chr3 134761837 134762833 -24836950 + L1Md_A LINE L1 5587 6582 0 3 1613 21 36 0 0 chr3 134763663 134763691 -24836092 + AT_rich Low_complexity Low_complexity 1 28 0 3 1613 24 32 0 0 chr3 134763809 134763840 -24835943 + AT_rich Low_complexity Low_complexity 1 31 0 3 1613 201 185 19 0 chr3 134764166 134764220 -24835563 + T-rich Low_complexity Low_complexity 6 60 0 3 1613 373 246 257 40 chr3 134764231 134764379 -24835404 - B3A SINE B2 -14 184 5 3 1613 300 291 0 132 chr3 134764867 134765049 -24834734 + MLT1J LTR MaLR 228 385 -127 3 1613 686 291 79 26 chr3 134765098 134765327 -24834456 + MTE2a LTR MaLR 139 379 0 3 1613 287 321 91 124 chr3 134765327 134765534 -24834249 + B4 SINE B4 94 292 0 3 1613 543 162 0 0 chr3 134765534 134765633 -24834150 + (CA)n Simple_repeat Simple_repeat 1 99 0 3 1613 27 29 0 0 chr3 134765636 134765670 -24834113 + AT_rich Low_complexity Low_complexity 1 34 0 3 1613 459 152 0 0 chr3 134766388 134766467 -24833316 + CT-rich Low_complexity Low_complexity 3 81 0 3 1613 545 113 58 18 chr3 134766956 134767127 -24832656 + (TATG)n Simple_repeat Simple_repeat 3 180 0 3 1613 5450 79 42 8 chr3 134768359 134769138 -24830645 - RLTR13D1 LTR ERVK 0 806 1 3 1613 189 0 0 0 chr3 134769310 134769331 -24830452 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 3 1613 208 301 97 0 chr3 134770038 134770141 -24829642 - MIR SINE MIR -32 230 118 3 1613 2150 65 7 27 chr3 134770646 134770946 -24828837 - L1_Mus3 LINE L1 0 6638 6345 3 1613 1768 139 130 0 chr3 134771079 134771417 -24828366 + ORR1C2 LTR MaLR 3 384 0 3 1613 1071 162 107 5 chr3 134771514 134771719 -24828064 + URR1A DNA MER1_type 1 226 0 3 1613 514 251 53 23 chr3 134771568 134771739 -24828044 - CYRA11_Mm Unknown Y-chromosome -295 322 147 3 1613 418 236 152 37 chr3 134771897 134772045 -24827738 - MTD LTR MaLR -258 161 1 3 1613 2457 40 0 3 chr3 134772241 134772543 -24827240 - L1Md_F3 LINE L1 -4 6580 6280 3 1613 667 266 125 89 chr3 134772683 134772964 -24826819 + B4 SINE B4 2 292 0 3 1613 975 296 64 35 chr3 134773216 134773825 -24825958 + L1_Mur3 LINE L1 3191 3817 -2063 3 1613 16014 77 30 5 chr3 134773866 134777274 -24822509 - Lx3_Mus LINE L1 -10 6999 3522 3 1613 367 241 95 42 chr3 134777277 134777582 -24822201 + L1M2 LINE L1 3819 4146 -1994 3 1613 270 0 0 0 chr3 134777582 134777612 -24822171 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 3 1613 367 285 73 62 chr3 134777612 134777680 -24822103 + L1M2 LINE L1 4147 4232 -1908 3 1613 5082 124 49 6 chr3 134777906 134778717 -24821066 + Lx2 LINE L1 6152 6997 0 3 1613 26 0 0 0 chr3 134778771 134778797 -24820986 + AT_rich Low_complexity Low_complexity 1 26 0 3 1613 1091 307 31 45 chr3 134778860 134779467 -24820316 + L1M2 LINE L1 4565 5163 -980 3 1613 470 300 8 16 chr3 134779467 134779589 -24820194 + ID_B1 SINE B4 91 211 -13 3 1613 1208 105 12 0 chr3 134779604 134779775 -24820008 + B2_Mm2 SINE B2 5 177 -18 4 1613 1042 282 63 39 chr3 134779821 134780239 -24819544 + MTD LTR MaLR 1 404 -15 4 1613 443 299 48 51 chr3 134780252 134780362 -24819421 + L1M2 LINE L1 5254 5369 -931 3 1613 1095 52 7 0 chr3 134780362 134780497 -24819286 + B1_Mus2 SINE Alu 1 136 -11 4 1613 974 107 0 7 chr3 134780498 134780649 -24819134 + (GAAA)n Simple_repeat Simple_repeat 3 152 0 4 1613 443 299 48 51 chr3 134780649 134780761 -24819022 + L1M2 LINE L1 5370 5481 -819 3 1613 330 87 0 0 chr3 134780761 134780807 -24818976 + (CA)n Simple_repeat Simple_repeat 1 46 0 4 1613 443 299 48 51 chr3 134780807 134780954 -24818829 + L1M2 LINE L1 5482 5624 -676 3 1613 280 288 98 18 chr3 134780961 134781124 -24818659 + Lx7 LINE L1 5696 5871 -1825 4 1613 1454 223 40 12 chr3 134781623 134781945 -24817838 + ORR1E LTR MaLR 1 331 -28 4 1613 252 0 0 0 chr3 134782079 134782107 -24817676 + (GA)n Simple_repeat Simple_repeat 1 28 0 4 1613 455 243 33 59 chr3 134782252 134782438 -24817345 + MTEa LTR MaLR 198 379 0 4 1613 566 257 38 32 chr3 134783374 134783531 -24816252 + RSINE1 SINE B4 4 161 -4 4 1613 247 322 35 12 chr3 134783533 134783706 -24816077 + (CATATA)n Simple_repeat Simple_repeat 1 177 0 4 1613 980 74 82 0 chr3 134783919 134784054 -24815729 + B1_Mus1 SINE Alu 3 148 0 4 1613 380 245 88 59 chr3 134784185 134784287 -24815496 + PB1D7 SINE Alu 18 120 -7 4 1613 35 24 0 0 chr3 134784380 134784422 -24815361 + AT_rich Low_complexity Low_complexity 1 42 0 4 1613 1035 56 0 0 chr3 134784497 134784640 -24815143 + (CTTTG)n Simple_repeat Simple_repeat 2 144 0 4 1613 633 191 9 0 chr3 134784640 134784750 -24815033 - PB1D9 SINE Alu -9 111 1 4 1613 3299 70 4 4 chr3 134785811 134786267 -24813516 + L1Md_F2 LINE L1 6047 6502 -80 4 1613 715 242 7 7 chr3 134786446 134786596 -24813187 + RSINE1 SINE B4 3 152 -13 4 1613 234 0 0 0 chr3 134787137 134787163 -24812620 + (TTTA)n Simple_repeat Simple_repeat 4 29 0 4 1613 700 294 130 0 chr3 134788058 134788289 -24811494 + MTE2b LTR MaLR 3 263 -116 4 1613 1323 241 112 11 chr3 134788362 134788727 -24811056 - MTD LTR MaLR 0 419 18 4 1613 477 214 68 4 chr3 134788728 134788857 -24810926 + MTE2b LTR MaLR 257 414 -5 4 1613 1890 264 94 11 chr3 134788860 134789404 -24810379 + MTE2b-int LTR MaLR 2 590 -990 4 1613 390 277 62 85 chr3 134789404 134789534 -24810249 + B1F SINE Alu 4 130 -19 4 1613 238 315 22 11 chr3 134789563 134789653 -24810130 + ID_B1 SINE B4 132 222 -2 4 1613 2031 283 109 4 chr3 134789662 134790201 -24809582 + MTE2b-int LTR MaLR 580 1175 -405 4 1613 339 25 0 0 chr3 134790220 134790260 -24809523 + (CA)n Simple_repeat Simple_repeat 2 41 0 4 1613 446 304 43 17 chr3 134790316 134790517 -24809266 + MLT1D LTR MaLR 11 223 -404 4 1613 25 31 0 0 chr3 134790575 134790607 -24809176 + AT_rich Low_complexity Low_complexity 1 32 0 4 1613 478 296 150 33 chr3 134790808 134791021 -24808762 - MLT1A0 LTR MaLR -6 359 122 4 1613 1575 219 66 13 chr3 134791521 134791900 -24807883 + RMER5 LTR ERV1 1 399 -135 4 1613 757 160 80 0 chr3 134791901 134792026 -24807757 + B1_Mus1 SINE Alu 2 136 -12 4 1613 690 13 0 0 chr3 134792026 134792105 -24807678 + (TAGA)n Simple_repeat Simple_repeat 2 80 0 4 1613 528 204 0 0 chr3 134792109 134792202 -24807581 + RMER5 LTR ERV1 437 529 -5 4 1613 197 277 0 0 chr3 134792559 134792606 -24807177 + L2 LINE L2 1286 1332 -2087 4 1613 1561 266 87 12 chr3 134792634 134792645 -24807138 - RMER5 LTR ERV1 0 534 524 4 1613 270 0 0 0 chr3 134792645 134792675 -24807108 + (CA)n Simple_repeat Simple_repeat 2 31 0 4 1613 1561 266 87 12 chr3 134792675 134793158 -24806625 - RMER5 LTR ERV1 -11 523 4 4 1613 1065 283 88 57 chr3 134793244 134793858 -24805925 - MER97c DNA MER1_type? -405 685 53 4 1613 225 0 0 0 chr3 134793858 134793883 -24805900 + (T)n Simple_repeat Simple_repeat 1 25 0 4 1613 241 250 231 8 chr3 134794218 134794335 -24805448 + L1_Rod LINE L1 5081 5223 -624 4 1613 498 75 0 0 chr3 134794389 134794456 -24805327 + (TC)n Simple_repeat Simple_repeat 1 67 0 4 1613 686 23 11 0 chr3 134794464 134794552 -24805231 + (TG)n Simple_repeat Simple_repeat 2 90 0 4 1613 2943 169 38 18 chr3 134794552 134795153 -24804630 - RMER6A LTR ERVK -5 751 139 4 1613 295 313 170 33 chr3 134795683 134796170 -24803613 + MT2A LTR ERVL 1 512 -42 4 1613 218 370 65 7 chr3 134796195 134796334 -24803449 + L2 LINE L2 2497 2643 -776 4 1613 904 256 10 0 chr3 134796342 134796541 -24803242 + B3 SINE B2 2 202 -14 4 1613 288 0 0 0 chr3 134796541 134796573 -24803210 + (TAAA)n Simple_repeat Simple_repeat 1 32 0 4 1613 866 60 0 0 chr3 134796615 134796731 -24803052 + B1_Mus1 SINE Alu 33 148 0 4 1613 247 366 58 93 chr3 134796768 134797166 -24802617 + L2 LINE L2 2694 3077 -342 4 1613 1753 228 80 82 chr3 134797575 134798079 -24801704 + RMER19C LTR ERVK 74 577 -34 4 1613 1159 82 0 0 chr3 134798079 134798225 -24801558 + B1_Mus2 SINE Alu 2 147 0 4 1613 1753 228 80 82 chr3 134798225 134798259 -24801524 + RMER19C LTR ERVK 578 611 0 4 1613 3324 108 32 25 chr3 134799347 134800029 -24799754 - L1_Mur1 LINE L1 -4417 1469 777 4 1613 1576 222 21 35 chr3 134800076 134800450 -24799333 - ORR1D2 LTR MaLR -1 369 1 4 1613 433 219 18 37 chr3 134801090 134801186 -24798597 + MER5A1 DNA MER1_type 30 123 -43 4 1613 460 333 58 43 chr3 134801186 134801393 -24798390 + MER63A DNA AcHobo 1 210 0 4 1613 297 0 0 0 chr3 134801791 134801824 -24797959 + (TTA)n Simple_repeat Simple_repeat 1 33 0 4 1613 270 0 0 0 chr3 134802444 134802474 -24797309 + (TG)n Simple_repeat Simple_repeat 2 31 0 4 1613 305 206 31 16 chr3 134803070 134803134 -24796649 + MER5A1 DNA MER1_type 102 166 0 4 1613 3731 119 45 23 chr3 134803575 134803623 -24796160 + Lx5 LINE L1 5219 5262 -615 4 1613 2341 200 57 56 chr3 134803623 134804233 -24795550 + RMER19C LTR ERVK 1 611 0 4 1613 5854 159 49 71 chr3 134804233 134805085 -24794698 + Lx5 LINE L1 5263 6116 -934 4 1613 296 211 0 71 chr3 134805085 134805141 -24794642 - RSINE1 SINE B4 -88 77 26 4 1613 5854 159 49 71 chr3 134805141 134806068 -24793715 + Lx5 LINE L1 6117 7047 -3 4 1613 2446 57 3 19 chr3 134806356 134806563 -24793220 + L1_Mus2 LINE L1 6250 6452 -114 4 1613 3643 70 5 88 chr3 134806563 134807129 -24792654 - MURVY-LTR LTR ERV1 0 519 1 4 1613 2446 57 3 19 chr3 134807129 134807243 -24792540 + L1_Mus2 LINE L1 6453 6566 0 4 1613 360 302 66 0 chr3 134807274 134807380 -24792403 + RSINE1 SINE B4 47 159 -6 4 1613 288 274 48 0 chr3 134807482 134807544 -24792239 + RSINE1 SINE B4 5 69 -96 4 1613 356 321 187 25 chr3 134807703 134807901 -24791882 + LTR16B1 LTR ERVL 42 271 -209 4 1613 1125 291 81 15 chr3 134808015 134808350 -24791433 + ORR1E LTR MaLR 3 359 0 4 1613 255 333 0 0 chr3 134808350 134808414 -24791369 + LTR16B1 LTR ERVL 417 480 0 4 1613 593 333 18 40 chr3 134808679 134808792 -24790991 - MER115 DNA Tip100 0 693 584 4 1613 1213 138 113 0 chr3 134808792 134808995 -24790788 + URR1A DNA MER1_type 1 226 0 4 1613 593 333 18 40 chr3 134808995 134809103 -24790680 - MER115 DNA Tip100 -110 583 477 4 1613 755 239 57 6 chr3 134809465 134809642 -24790141 - MLT1B LTR MaLR -2 388 203 4 1613 433 296 77 22 chr3 134810216 134810399 -24789384 - MLT1B LTR MaLR -194 196 4 4 1613 212 178 22 0 chr3 134810424 134810469 -24789314 + B4 SINE B4 2 47 -245 4 1613 1294 288 74 28 chr3 134810691 134811162 -24788621 + RMER5 LTR ERV1 33 525 -9 4 1613 8024 27 1 0 chr3 134811190 134812323 -24787460 - L1Md_A LINE L1 -1 6581 5448 4 1613 1827 130 16 118 chr3 134812394 134812760 -24787023 + ORR1A4 LTR MaLR 1 329 0 4 1613 772 306 71 73 chr3 134813249 134813784 -24785999 + L3 LINE CR1 3473 4006 -483 4 1613 252 325 96 16 chr3 134813969 134814094 -24785689 + ORR1E LTR MaLR 4 138 -221 4 1613 3575 158 32 17 chr3 134814566 134815228 -24784555 + RMER6C LTR ERVK 19 690 0 4 1613 328 339 55 38 chr3 134815229 134815572 -24784211 + L1M3b LINE L1 67 415 -5866 4 1613 635 242 16 8 chr3 134815863 134815992 -24783791 + B1F SINE Alu 10 139 -10 4 1613 988 131 6 6 chr3 134815992 134816168 -24783615 + (GAGAA)n Simple_repeat Simple_repeat 4 179 0 4 1613 369 289 93 43 chr3 134816516 134816738 -24783045 + MLT1A LTR MaLR 160 390 0 4 1613 1290 231 158 8 chr3 134816820 134817174 -24782609 - MTD LTR MaLR 0 419 13 4 1613 475 282 32 0 chr3 134817906 134818030 -24781753 - MIRb SINE MIR -121 147 20 4 1613 365 0 22 0 chr3 134819078 134819123 -24780660 + (CA)n Simple_repeat Simple_repeat 1 46 0 4 1613 257 301 41 95 chr3 134819165 134819334 -24780449 + RMER10A LTR ERVL 253 412 -30 4 1613 37284 40 12 13 chr3 134819689 134826017 -24773766 - L1Md_A LINE L1 -1 6581 263 4 1613 269 245 143 54 chr3 134826035 134826082 -24773701 - MLT1A0 LTR MaLR -87 287 226 4 1613 838 136 43 0 chr3 134826082 134826244 -24773539 - L1_Mus3 LINE L1 0 6638 6470 4 1613 288 245 143 54 chr3 134826244 134826343 -24773440 - MLT1A0 LTR MaLR -149 225 116 4 1613 452 273 57 24 chr3 134826352 134826476 -24773307 + B1_Mur1 SINE Alu 1 128 -21 4 1613 291 71 0 0 chr3 134826611 134826653 -24773130 + (CA)n Simple_repeat Simple_repeat 1 42 0 4 1613 811 175 28 7 chr3 134826721 134826865 -24772918 - B1_Mm SINE Alu 0 147 1 4 1613 224 390 42 12 chr3 134827055 134827221 -24772562 - L2a LINE L2 -294 3132 2962 4 1613 619 301 26 17 chr3 134827524 134827754 -24772029 - MLT2D LTR ERVL -182 232 1 4 1613 343 332 71 0 chr3 134827863 134828059 -24771724 - L1M5 LINE L1 -492 5748 5539 4 1613 207 0 0 0 chr3 134828286 134828309 -24771474 + (A)n Simple_repeat Simple_repeat 1 23 0 4 1613 5228 94 11 69 chr3 134828416 134829269 -24770514 + RLTR13B4 LTR ERVK 1 803 0 4 1613 663 323 20 72 chr3 134829288 134829502 -24770281 + B4A SINE B4 5 209 -83 4 1613 198 0 0 0 chr3 134829502 134829524 -24770259 + (TTAA)n Simple_repeat Simple_repeat 1 22 0 4 1613 663 323 20 72 chr3 134829524 134829613 -24770170 + B4A SINE B4 210 292 0 4 1613 478 358 78 15 chr3 134829823 134830027 -24769756 + Tigger5 DNA MER2_type 1 217 -2189 4 1613 34 0 0 0 chr3 134830263 134830297 -24769486 + AT_rich Low_complexity Low_complexity 1 34 0 4 1613 186 133 0 0 chr3 134830390 134830420 -24769363 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 4 1613 532 229 35 0 chr3 134830422 134830542 -24769241 - B1_Mur4 SINE Alu -8 142 17 4 1613 484 221 68 6 chr3 134830549 134830726 -24769057 + L1MA5 LINE L1 6113 6300 0 4 1613 2159 136 57 6 chr3 134831145 134831499 -24768284 - ORR1B1 LTR MaLR -20 374 3 4 1613 330 241 58 167 chr3 134831648 134831822 -24767961 + RMER15 LTR ERVL 1 155 -420 4 1613 441 0 0 0 chr3 134831823 134831872 -24767911 + (GA)n Simple_repeat Simple_repeat 2 50 0 4 1613 683 313 45 45 chr3 134831874 134832165 -24767618 + RMER15 LTR ERVL 283 573 -2 4 1613 291 250 47 0 chr3 134832466 134832530 -24767253 + MTE2a LTR MaLR 20 86 -293 4 1613 225 0 0 0 chr3 134832983 134833008 -24766775 + (TTCA)n Simple_repeat Simple_repeat 4 28 0 5 1613 450 268 222 0 chr3 134834680 134835000 -24764783 + ERVL-int LTR ERVL 292 682 -5032 5 1613 634 274 90 13 chr3 134835147 134835380 -24764403 + ERVL-int LTR ERVL 2623 2873 -2884 5 1613 188 362 25 0 chr3 134835458 134835538 -24764245 - L2a LINE L2 -14 3412 3331 5 1613 372 22 0 0 chr3 134836225 134836270 -24763513 + (TG)n Simple_repeat Simple_repeat 2 46 0 5 1613 857 326 20 0 chr3 134836332 134836577 -24763206 - B4A SINE B4 -41 251 2 5 1613 1945 149 40 34 chr3 134837024 134837378 -24762405 + Lx2 LINE L1 6622 6977 -20 5 1613 1237 43 43 0 chr3 134837378 134837539 -24762244 + B2_Mm2 SINE B2 2 169 -26 5 1613 395 109 296 19 chr3 134837555 134837659 -24762124 + B2_Mm2 SINE B2 46 183 -12 5 1613 206 252 50 0 chr3 134837682 134837781 -24762002 + A-rich Low_complexity Low_complexity 6 109 0 5 1613 26 50 0 0 chr3 134837847 134837887 -24761896 + AT_rich Low_complexity Low_complexity 1 40 0 5 1613 2121 230 67 85 chr3 134837914 134838688 -24761095 - RLTR40 LTR ERVK -39 778 19 5 1613 25 51 0 0 chr3 134838835 134838874 -24760909 + AT_rich Low_complexity Low_complexity 1 39 0 5 1613 349 307 49 102 chr3 134838974 134839271 -24760512 - B4A SINE B4 -10 282 8 5 1613 505 350 80 51 chr3 134839320 134839868 -24759915 + L1M5 LINE L1 3369 3932 -2214 5 1613 315 259 9 4 chr3 134840333 134840443 -24759340 + B1F2 SINE Alu 1 111 -6 5 1613 618 14 0 0 chr3 134841017 134841088 -24758695 + (TG)n Simple_repeat Simple_repeat 2 72 0 5 1613 279 256 146 49 chr3 134841505 134841649 -24758134 + L3 LINE CR1 847 1004 -3485 5 1613 839 171 7 41 chr3 134842921 134843067 -24756716 - B1_Mur4 SINE Alu -9 141 1 5 1613 823 154 27 34 chr3 134843402 134843550 -24756233 - B1_Mus1 SINE Alu 0 148 2 5 1613 227 299 32 71 chr3 134843677 134843803 -24755980 - L1MC4a LINE L1 -895 7066 6946 5 1613 278 294 128 25 chr3 134843902 134844071 -24755712 - L1MC4a LINE L1 -1209 6833 6688 5 1613 467 289 8 16 chr3 134844089 134844212 -24755571 + B3A SINE B2 3 125 -70 5 1613 327 85 0 0 chr3 134844231 134844278 -24755505 + (CA)n Simple_repeat Simple_repeat 1 47 0 5 1613 302 228 0 0 chr3 134844731 134844788 -24754995 + MER20 DNA MER1_type 1 57 -162 5 1613 2152 120 272 2 chr3 134844974 134845382 -24754401 - MT2B2 LTR ERVL -43 541 24 5 1613 1840 58 5 0 chr3 134845534 134845757 -24754026 - L1_Mus1 LINE L1 0 6567 6344 5 1613 320 151 0 0 chr3 134845757 134845810 -24753973 - MT2B2 LTR ERVL -548 53 1 5 1613 234 230 22 54 chr3 134845848 134845913 -24753870 - ORR1A3-int LTR MaLR -1323 640 577 5 1613 4740 66 0 56 chr3 134845913 134846535 -24753248 + LTRIS_Mus LTR ERV1 1 587 0 5 1613 234 230 22 54 chr3 134846535 134846561 -24753222 - ORR1A3-int LTR MaLR -1387 576 553 5 1613 370 115 216 11 chr3 134846568 134846656 -24753127 - MERVL_2A-int LTR ERVL -153 5608 5503 5 1613 354 347 83 78 chr3 134846700 134846850 -24752933 - L1MC4a LINE L1 -1960 5922 5763 5 1613 492 18 0 0 chr3 134846850 134846907 -24752876 + (GTTTG)n Simple_repeat Simple_repeat 2 58 0 5 1613 591 217 117 0 chr3 134846911 134847031 -24752752 - B1_Mur4 SINE Alu -13 137 4 5 1613 354 347 83 78 chr3 134847031 134847416 -24752367 - L1MC4a LINE L1 -2120 5762 5379 5 1613 386 293 32 16 chr3 134847645 134847770 -24752013 - B1F SINE Alu -19 130 4 5 1613 234 0 0 0 chr3 134847829 134847855 -24751928 + (TTG)n Simple_repeat Simple_repeat 2 27 0 5 1613 306 21 42 0 chr3 134847891 134847939 -24751844 + B1_Mus2 SINE Alu 98 147 0 5 1613 234 128 0 0 chr3 134847939 134847978 -24751805 + (A)n Simple_repeat Simple_repeat 1 39 0 5 1613 8021 50 12 3 chr3 134848155 134849510 -24750273 - L1Md_F3 LINE L1 0 6584 5218 5 1613 2749 132 115 23 chr3 134849802 134850376 -24749407 - RMER17A LTR ERVK 0 751 125 5 1613 851 94 54 15 chr3 134850523 134850653 -24749130 - RMER17A LTR ERVK -616 135 1 5 1613 4028 176 15 5 chr3 134851184 134852139 -24747644 + Lx5 LINE L1 985 1949 -3928 5 1613 235 111 0 0 chr3 134852135 134852171 -24747612 + Lx5 LINE L1 4486 4521 -1359 5 1613 1450 167 101 4 chr3 134852204 134852481 -24747302 - RMER12 LTR ERVK -1014 308 5 5 1613 3181 158 42 21 chr3 134852484 134853215 -24746568 + Lx5 LINE L1 4921 6255 -795 5 1613 407 22 0 0 chr3 134853220 134853265 -24746518 + Lx5 LINE L1 6427 6471 -579 5 1613 4503 41 2 2 chr3 134853287 134853796 -24745987 - L1Md_F2 LINE L1 -3 6579 6071 5 1613 6822 34 1 0 chr3 134853796 134854784 -24744999 + L1Md_F2 LINE L1 5057 6045 -537 5 1613 227 97 0 0 chr3 134854779 134854810 -24744973 + Lx5 LINE L1 6459 6489 -561 5 1613 708 331 50 4 chr3 134855700 134855958 -24743825 + MER58B DNA MER1_type 15 284 -57 5 1613 4712 14 0 0 chr3 134855960 134856453 -24743330 + MT2_Mm LTR ERVL 1 493 0 5 1613 339 263 10 50 chr3 134856490 134856590 -24743193 + PB1D10 SINE Alu 16 111 -6 5 1613 232 226 19 0 chr3 134857213 134857266 -24742517 + (TA)n Simple_repeat Simple_repeat 1 54 0 5 1613 963 89 0 0 chr3 134857269 134857404 -24742379 + (TG)n Simple_repeat Simple_repeat 1 135 0 5 1613 26096 61 0 1 chr3 134857754 134861751 -24738032 - L1Md_F2 LINE L1 -4 6578 2583 5 1613 1291 96 0 26 chr3 134861756 134861948 -24737835 - L1Md_F2 LINE L1 -6129 487 301 5 1613 189 74 0 0 chr3 134862343 134862370 -24737413 + (CAAAAA)n Simple_repeat Simple_repeat 4 30 0 5 1613 24 77 0 0 chr3 134862655 134862707 -24737076 + AT_rich Low_complexity Low_complexity 1 52 0 5 1613 248 0 31 0 chr3 134863350 134863382 -24736401 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 5 1613 2274 76 3 59 chr3 134864851 134865188 -24734595 - ORR1A2 LTR MaLR -9 318 1 5 1613 256 255 30 50 chr3 134865398 134865497 -24734286 - MTEa LTR MaLR -5 374 278 5 1613 230 327 0 113 chr3 134865756 134865880 -24733903 - MTEa LTR MaLR -269 110 1 5 1613 447 326 56 21 chr3 134866229 134866261 -24733522 + ID_B1 SINE B4 50 198 -26 5 1613 641 214 71 0 chr3 134866261 134866373 -24733410 + B1_Mur2 SINE Alu 1 120 -29 5 1613 327 25 0 0 chr3 134866399 134866439 -24733344 + (TTTTG)n Simple_repeat Simple_repeat 2 41 0 5 1613 29 0 0 0 chr3 134866515 134866544 -24733239 + AT_rich Low_complexity Low_complexity 1 29 0 5 1613 1019 255 90 30 chr3 134866573 134866840 -24732943 - B4 SINE B4 -2 290 8 5 1613 1018 328 45 37 chr3 134866843 134867223 -24732560 - Tigger7 DNA MER2_type -2108 383 1 5 1613 4504 146 158 39 chr3 134867501 134867641 -24732142 - MTC-int LTR MaLR 0 1258 1120 5 1613 1232 35 7 20 chr3 134867641 134867788 -24731995 + B1_Mm SINE Alu 3 147 0 5 1613 4504 146 158 39 chr3 134867788 134868646 -24731137 - MTC-int LTR MaLR -139 1119 141 5 1613 1200 109 38 5 chr3 134868632 134868817 -24730966 - B2_Mm2 SINE B2 -4 191 1 5 1613 1522 211 77 41 chr3 134868836 134869201 -24730582 - Lx6 LINE L1 -160 7300 6923 5 1613 876 164 47 35 chr3 134869202 134869392 -24730391 - MTC-int LTR MaLR -1347 233 18 5 1613 188 263 51 26 chr3 134869857 134869935 -24729848 + MIRb SINE MIR 93 172 -96 5 1613 530 150 24 32 chr3 134870221 134870345 -24729438 + Lx6 LINE L1 7334 7456 -4 5 1613 235 293 208 68 chr3 134870994 134871039 -24728744 - L2 LINE L2 -410 3009 2970 5 1613 245 218 34 124 chr3 134871039 134871128 -24728655 + ID4_ SINE ID 2 82 -1 5 1613 235 293 208 68 chr3 134871128 134871554 -24728229 - L2 LINE L2 -450 2969 2472 5 1613 603 341 44 47 chr3 134871567 134871908 -24727875 + ORR1E LTR MaLR 9 348 -11 5 1613 852 181 0 0 chr3 134872393 134872526 -24727257 - B1_Mur3 SINE Alu -14 135 3 5 1613 530 248 0 63 chr3 134872526 134872668 -24727115 - B1_Mur3 SINE Alu -15 134 2 5 1613 1283 41 0 0 chr3 134872694 134872841 -24726942 + B1_Mm SINE Alu 1 147 0 5 201 3148 57 26 10 chr3 134872966 134873356 -24726427 - MTA_Mm LTR MaLR 0 396 1 5 1614 1917 129 253 16 chr3 134873824 134874195 -24725588 + RMER6B LTR ERVK 1 459 -2 5 1614 475 219 103 17 chr3 134874738 134874854 -24724929 + RSINE1 SINE B4 1 126 -39 5 1614 365 273 9 43 chr3 134874856 134874971 -24724812 + Lx9 LINE L1 6515 6625 -1019 5 1614 404 267 52 0 chr3 134874964 134875080 -24724703 - Lx9 LINE L1 -1156 6488 6367 5 1614 801 278 82 82 chr3 134876053 134876468 -24723315 + MTD LTR MaLR 5 419 0 5 1614 320 279 38 84 chr3 134876663 134876725 -24723058 + MT2B LTR ERVL 110 160 -424 5 1614 613 193 93 29 chr3 134876725 134876864 -24722919 + B1_Mur1 SINE Alu 2 149 0 5 1614 227 261 71 71 chr3 134876964 134877063 -24722720 - RMER30 DNA MER1_type -26 176 78 5 1614 987 150 0 7 chr3 134877126 134877267 -24722516 - B1_Mur4 SINE Alu -8 142 3 5 1614 183 80 0 0 chr3 134877612 134877637 -24722146 + (CAAAC)n Simple_repeat Simple_repeat 2 26 0 5 1614 198 0 0 0 chr3 134877638 134877660 -24722123 + (A)n Simple_repeat Simple_repeat 1 22 0 5 1614 295 298 65 2 chr3 134878186 134878307 -24721476 + PB1D10 SINE Alu 1 132 -17 5 1614 207 0 0 0 chr3 134878828 134878851 -24720932 + (T)n Simple_repeat Simple_repeat 1 23 0 5 1614 1497 85 5 0 chr3 134881092 134881281 -24718502 - B2_Mm1a SINE B2 -3 190 1 5 1614 219 383 25 0 chr3 134882041 134882065 -24717718 - ID4 SINE ID 0 83 22 5 1614 225 274 20 0 chr3 134882065 134882116 -24717667 - tRNA-Ala-GCY_ tRNA tRNA -23 52 1 5 1614 432 264 37 52 chr3 134882349 134882485 -24717298 - B1F SINE Alu -1 148 15 5 1614 224 220 0 20 chr3 134884187 134884238 -24715545 + PB1D7 SINE Alu 14 63 -57 5 1614 501 265 8 8 chr3 134885776 134885894 -24713889 - RSINE1 SINE B4 -44 121 4 5 1614 27 0 0 0 chr3 134886046 134886073 -24713710 + AT_rich Low_complexity Low_complexity 1 27 0 5 1614 303 312 100 50 chr3 134886406 134886706 -24713077 - MER113 DNA MER1_type -6 515 201 5 1614 274 311 60 106 chr3 134886783 134886934 -24712849 + ID_B1 SINE B4 1 144 -80 5 1614 281 391 0 18 chr3 134886986 134887098 -24712685 + B1_Mus1 SINE Alu 39 148 0 5 1614 268 268 31 54 chr3 134887221 134887351 -24712432 + B3A SINE B2 1 127 -71 5 1614 278 197 32 16 chr3 134888210 134888272 -24711511 + ID4 SINE ID 21 83 0 5 1614 256 369 9 9 chr3 134888382 134888494 -24711289 + ID_B1 SINE B4 88 199 -25 5 1614 9038 69 4 5 chr3 134889038 134890871 -24708912 - L1Md_F2 LINE L1 -9 6573 4747 5 1614 5439 55 7 6 chr3 134890869 134891561 -24708222 + L1Md_F2 LINE L1 4057 4749 -1134 5 1614 31 76 0 0 chr3 134891561 134891627 -24708156 + AT_rich Low_complexity Low_complexity 1 66 0 5 1614 22 35 0 0 chr3 134892897 134892926 -24706857 + AT_rich Low_complexity Low_complexity 1 29 0 5 1614 345 306 54 0 chr3 134893334 134893445 -24706338 + PB1D10 SINE Alu 1 117 0 5 1614 21 0 0 0 chr3 134893733 134893754 -24706029 + AT_rich Low_complexity Low_complexity 1 21 0 6 1614 3085 54 23 8 chr3 134893754 134894144 -24705639 - L1_Mus1 LINE L1 -2 6565 6170 6 1614 639 270 25 0 chr3 134894497 134894660 -24705123 - B3 SINE B2 -9 207 41 6 1614 760 226 55 15 chr3 134895149 134895351 -24704432 + B3 SINE B2 2 211 -5 6 1614 588 237 103 29 chr3 134896318 134896492 -24703291 - B3A SINE B2 -11 187 1 6 1614 195 220 0 0 chr3 134896592 134896642 -24703141 + T-rich Low_complexity Low_complexity 5 54 0 6 1614 418 169 17 0 chr3 134897299 134897417 -24702366 + (TTGG)n Simple_repeat Simple_repeat 2 121 0 6 1614 668 240 14 0 chr3 134897423 134897569 -24702214 - B1_Mur1 SINE Alu -1 148 1 6 1614 248 286 65 0 chr3 134898928 134899005 -24700778 + Lx8 LINE L1 6925 7006 -467 6 1614 487 215 30 37 chr3 134899024 134899159 -24700624 + B3 SINE B2 77 210 -6 6 1614 189 293 35 0 chr3 134899305 134899363 -24700420 - MIRb SINE MIR -20 248 189 6 1614 898 193 38 24 chr3 134899370 134899582 -24700201 + URR1A DNA MER1_type 12 226 0 6 1614 693 161 0 0 chr3 134899984 134900102 -24699681 + B1_Mur4 SINE Alu 31 148 -2 6 1614 252 270 32 0 chr3 134900285 134900348 -24699435 + ID4_ SINE ID 15 79 -4 6 1614 306 50 0 0 chr3 134900807 134900847 -24698936 + (TG)n Simple_repeat Simple_repeat 1 40 0 6 1614 399 171 194 8 chr3 134901474 134901598 -24698185 + MTD LTR MaLR 273 419 0 6 1614 602 265 86 23 chr3 134901942 134902162 -24697621 - MTEb LTR MaLR -1 378 145 6 1614 356 367 17 11 chr3 134902447 134902626 -24697157 + MIR SINE MIR 19 198 -64 6 1614 377 286 95 30 chr3 134903064 134903295 -24696488 - L1M5 LINE L1 -566 5613 5368 6 1614 483 244 129 8 chr3 134904195 134904327 -24695456 + B1F SINE Alu 1 148 -1 6 1614 476 171 0 0 chr3 134904556 134904638 -24695145 - B1_Mur2 SINE Alu -6 143 62 6 1614 485 235 67 15 chr3 134905720 134905854 -24693929 + ID_B1 SINE B4 84 224 0 6 1614 250 164 16 32 chr3 134906847 134906910 -24692873 + (TTTG)n Simple_repeat Simple_repeat 2 63 0 6 1614 1071 94 0 0 chr3 134906931 134907069 -24692714 - B1_Mus1 SINE Alu -10 138 1 6 1614 305 282 58 0 chr3 134907071 134907174 -24692609 - PB1D10 SINE Alu 0 117 9 6 1614 383 200 394 0 chr3 134907853 134908008 -24691775 - B3 SINE B2 0 216 1 6 1614 708 208 208 0 chr3 134908525 134908693 -24691090 + B3 SINE B2 1 203 -13 6 1614 1163 175 0 5 chr3 134909003 134909193 -24690590 - Lx9 LINE L1 -691 6953 6765 6 1614 225 237 13 101 chr3 134912084 134912177 -24687606 + RSINE1 SINE B4 12 95 -70 6 1614 217 105 10 122 chr3 134912203 134912301 -24687482 + GA-rich Low_complexity Low_complexity 1 87 0 6 1614 425 244 52 3 chr3 134912880 134913022 -24686761 + L1M5 LINE L1 5630 5779 -399 6 1614 476 80 40 0 chr3 134913082 134913182 -24686601 + (TG)n Simple_repeat Simple_repeat 1 104 0 6 1614 280 178 0 0 chr3 134913195 134913240 -24686543 + B1_Mus1 SINE Alu 1 45 -103 6 1614 263 49 24 0 chr3 134913250 134913291 -24686492 + (TG)n Simple_repeat Simple_repeat 1 42 0 6 1614 851 167 21 0 chr3 134913302 134913446 -24686337 + B1_Mus1 SINE Alu 1 147 -1 6 1614 338 244 151 75 chr3 134914105 134914304 -24685479 + B3 SINE B2 2 215 -1 6 1614 444 118 0 0 chr3 134914719 134914787 -24684996 + (TCTCCC)n Simple_repeat Simple_repeat 3 70 0 6 1614 186 118 0 0 chr3 134914788 134914822 -24684961 + (TCTG)n Simple_repeat Simple_repeat 1 34 0 6 1614 218 286 36 0 chr3 134914822 134914878 -24684905 - B3 SINE B2 -67 149 92 6 1614 357 174 0 0 chr3 134915527 134915596 -24684187 + (TATATG)n Simple_repeat Simple_repeat 4 72 0 6 1614 21 89 0 0 chr3 134916432 134916488 -24683295 + AT_rich Low_complexity Low_complexity 1 56 0 6 1614 296 303 0 0 chr3 134917333 134917422 -24682361 + PB1D10 SINE Alu 27 115 -2 6 1614 908 110 80 17 chr3 134917566 134917742 -24682041 - MusHAL1 LINE L1 -1789 923 737 6 1614 34 0 0 0 chr3 134919146 134919180 -24680603 + GC_rich Low_complexity Low_complexity 1 34 0 6 1614 397 258 109 87 chr3 134919881 134920110 -24679673 - RMER15 LTR ERVL -36 539 306 6 1614 920 256 101 0 chr3 134920822 134921080 -24678703 + B4A SINE B4 9 292 0 6 1614 369 283 62 67 chr3 134921458 134921651 -24678132 + B3A SINE B2 2 193 -5 6 1614 660 236 107 25 chr3 134921722 134921918 -24677865 + B3 SINE B2 2 213 -3 6 1614 316 267 131 12 chr3 134923593 134923727 -24676056 - L1MC2 LINE L1 -23 6321 6171 6 1614 969 226 10 0 chr3 134923898 134924102 -24675681 + B3 SINE B2 1 206 -10 6 1614 1778 106 4 4 chr3 134924796 134925072 -24674711 - RLTR19 LTR ERVK -223 276 1 6 1614 470 198 0 0 chr3 134925072 134925158 -24674625 - B1_Mus2 SINE Alu -12 135 50 6 1614 339 169 59 69 chr3 134925537 134925639 -24674144 - B3A SINE B2 -97 101 1 6 1614 257 274 144 31 chr3 134926349 134926676 -24673107 + L1MC LINE L1 5002 5365 -781 6 1614 293 266 22 108 chr3 134926840 134926979 -24672804 - B3 SINE B2 -75 141 15 6 1614 34 0 0 0 chr3 134927480 134927514 -24672269 + AT_rich Low_complexity Low_complexity 1 34 0 6 1614 472 175 49 0 chr3 134928222 134928336 -24671447 - B1_Mur3 SINE Alu -8 141 13 6 1614 553 276 13 6 chr3 134928995 134929152 -24670631 - HAL1-2a_MD LINE L1 -522 2502 2345 6 1614 854 220 77 34 chr3 134929160 134929367 -24670416 - Lx6 LINE L1 -37 7423 7208 6 1614 514 174 49 77 chr3 134929368 134929448 -24670335 - L1_Mur3 LINE L1 -451 5429 5355 6 1614 933 128 202 0 chr3 134929448 134929636 -24670147 + URR1A DNA MER1_type 1 226 0 6 1614 514 174 49 77 chr3 134929636 134929698 -24670085 - L1_Mur3 LINE L1 -526 5354 5291 6 1614 748 163 7 7 chr3 134929750 134929886 -24669897 - B3 SINE B2 -80 136 1 6 1614 4156 208 150 26 chr3 134929886 134931168 -24668615 - L1_Mur3 LINE L1 -582 5298 3858 6 1614 240 216 49 49 chr3 134931741 134931843 -24667940 + PB1D10 SINE Alu 2 103 -14 6 1614 430 174 24 73 chr3 134932108 134932232 -24667551 + PB1D9 SINE Alu 3 120 0 6 1614 405 272 129 30 chr3 134932457 134932658 -24667125 - B4A SINE B4 -14 278 58 6 1614 241 308 26 0 chr3 134932912 134932990 -24666793 + ID4_ SINE ID 2 81 -2 6 1614 225 333 57 11 chr3 134934246 134934334 -24665449 - Tigger7 DNA MER2_type -4 2487 2396 6 1614 233 291 154 0 chr3 134934359 134934469 -24665314 - Tigger7 DNA MER2_type -2082 409 283 6 1614 1231 21 7 0 chr3 134934596 134934741 -24665042 + B1_Mus2 SINE Alu 2 147 0 6 1614 387 197 227 0 chr3 134934757 134934889 -24664894 + B3 SINE B2 49 210 -6 6 1614 195 146 0 0 chr3 134935048 134935089 -24664694 + (CA)n Simple_repeat Simple_repeat 1 41 0 6 1614 210 37 0 0 chr3 134935094 134935121 -24664662 + (TC)n Simple_repeat Simple_repeat 1 27 0 6 1614 1509 262 64 43 chr3 134935201 134935826 -24663957 - Lx9 LINE L1 -405 7239 6602 6 1614 560 158 0 0 chr3 134936586 134936681 -24663102 - RMER15 LTR ERVL 0 575 481 6 1614 5353 21 6 26 chr3 134936794 134937437 -24662346 - L1Md_F2 LINE L1 0 6582 5953 6 1614 797 222 123 53 chr3 134937482 134937725 -24662058 - RMER15-int LTR ERVL -593 4406 4147 6 1614 502 243 122 26 chr3 134937822 134937978 -24661805 - RMER15-int LTR ERVL -2611 2388 2218 6 1614 297 183 17 0 chr3 134938090 134938150 -24661633 - URR1B DNA MER1_type 0 225 165 6 1614 851 145 63 0 chr3 134938157 134938316 -24661467 - URR1B DNA MER1_type 0 225 57 6 1614 592 212 119 0 chr3 134938337 134938488 -24661295 - RMER15-int LTR ERVL -3394 1605 1437 6 1614 3700 256 133 33 chr3 134938622 134939607 -24660176 - RMER15-int LTR ERVL -3512 1487 383 6 1614 376 159 707 8 chr3 134939607 134939740 -24660043 + URR1A DNA MER1_type 1 226 0 6 1614 3700 256 133 33 chr3 134939740 134939947 -24659836 - RMER15-int LTR ERVL -4617 382 163 6 1614 2447 146 68 58 chr3 134939947 134940465 -24659318 + RLTR28 LTR ERVL 2 524 0 6 1614 3700 256 133 33 chr3 134940465 134940622 -24659161 - RMER15-int LTR ERVL -4837 162 1 6 1614 734 97 0 9 chr3 134940782 134940896 -24658887 + (TTCC)n Simple_repeat Simple_repeat 2 114 0 6 1614 2527 73 39 6 chr3 134940896 134941252 -24658531 - L1_Mus4 LINE L1 -1 6635 6268 6 1614 2511 178 24 112 chr3 134941603 134942191 -24657592 - RMER15 LTR ERVL -39 536 1 6 1614 694 279 60 35 chr3 134942246 134942528 -24657255 + B4 SINE B4 2 290 -2 6 1614 310 254 107 0 chr3 134942640 134942738 -24657045 - PB1D10 SINE Alu 0 117 14 6 1614 259 284 246 0 chr3 134943156 134943290 -24656493 - ID_B1 SINE B4 -8 216 50 6 1614 189 94 0 0 chr3 134944708 134944740 -24655043 + (A)n Simple_repeat Simple_repeat 1 32 0 6 1614 994 144 168 16 chr3 134944883 134945073 -24654710 + URR1A DNA MER1_type 5 223 -3 6 1614 607 225 8 0 chr3 134946165 134946294 -24653489 + B3 SINE B2 1 130 -86 6 1614 1625 166 155 33 chr3 134946644 134947012 -24652771 + MTC LTR MaLR 1 413 -8 6 1614 1061 87 0 0 chr3 134947634 134947772 -24652011 + B1_Mus2 SINE Alu 1 138 -9 6 1614 245 27 54 0 chr3 134947772 134947809 -24651974 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 6 1614 463 242 6 6 chr3 134948755 134948913 -24650870 + CT-rich Low_complexity Low_complexity 6 163 0 6 1614 318 288 0 12 chr3 134948914 134948995 -24650788 - ID4_ SINE ID 0 83 4 6 1614 434 239 6 0 chr3 134949054 134949182 -24650601 + (TG)n Simple_repeat Simple_repeat 2 130 0 6 1614 511 81 11 22 chr3 134949182 134949271 -24650512 - L1Md_F2 LINE L1 -12 6570 6483 6 1614 796 188 1 9 chr3 134949271 134949489 -24650294 + (TG)n Simple_repeat Simple_repeat 1 216 0 6 1614 494 256 11 96 chr3 134949489 134949666 -24650117 - RSINE1 SINE B4 -1 164 3 6 1614 519 189 69 38 chr3 134950066 134950225 -24649558 + RSINE1 SINE B4 2 165 0 6 1614 264 30 0 0 chr3 134950324 134950357 -24649426 + (TTTG)n Simple_repeat Simple_repeat 3 35 0 6 1614 457 234 71 16 chr3 134950361 134950487 -24649296 - B1_Mur2 SINE Alu -16 133 1 6 1614 799 208 180 0 chr3 134950539 134950722 -24649061 - B3 SINE B2 0 216 1 6 1614 736 109 50 0 chr3 134950737 134950856 -24648927 - B1_Mur3 SINE Alu 0 149 25 6 1614 1112 62 7 7 chr3 134950960 134951106 -24648677 + B1_Mus2 SINE Alu 2 147 0 6 1614 666 238 151 0 chr3 134951897 134952082 -24647701 - B3 SINE B2 -3 213 1 7 1614 476 226 23 124 chr3 134952146 134952323 -24647460 - B3A SINE B2 -6 189 31 7 1614 182 62 31 0 chr3 134953192 134953224 -24646559 + (TTTTG)n Simple_repeat Simple_repeat 3 35 0 7 1614 413 165 118 0 chr3 134953536 134953621 -24646162 - RSINE1 SINE B4 -40 125 31 7 1614 628 197 8 8 chr3 134953637 134953765 -24646018 - B1_Mur1 SINE Alu 0 149 22 7 1614 400 300 63 78 chr3 134953642 134953767 -24646016 - ID_B1 SINE B4 -4 220 103 7 1614 414 0 0 0 chr3 134953767 134953813 -24645970 + (TG)n Simple_repeat Simple_repeat 1 46 0 7 1614 222 37 0 0 chr3 134953813 134953839 -24645944 + (CCG)n Simple_repeat Simple_repeat 2 28 0 7 1614 400 300 63 78 chr3 134953839 134953918 -24645865 - ID_B1 SINE B4 -122 102 19 7 1614 327 49 0 0 chr3 134954723 134954764 -24645019 + (TTA)n Simple_repeat Simple_repeat 2 42 0 7 1614 545 164 485 0 chr3 134954764 134954898 -24644885 - B3 SINE B2 -17 199 1 7 1614 479 209 26 60 chr3 134954904 134955021 -24644762 - PB1D9 SINE Alu -6 114 2 7 1614 925 181 0 0 chr3 134955215 134955364 -24644419 - B1_Mur2 SINE Alu 0 149 1 7 1614 452 259 137 19 chr3 134955464 134955625 -24644158 + B3A SINE B2 3 182 -16 7 1614 462 238 48 16 chr3 134957093 134957217 -24642566 - B1_Mur1 SINE Alu 0 149 22 7 1614 853 169 7 0 chr3 134957282 134957430 -24642353 + B1_Mur3 SINE Alu 1 149 0 7 1614 401 238 50 0 chr3 134957975 134958076 -24641707 + PB1D10 SINE Alu 6 111 -6 7 1614 941 128 0 6 chr3 134958291 134958472 -24641311 + (CA)n Simple_repeat Simple_repeat 1 180 0 7 1614 240 279 50 75 chr3 134958883 134959003 -24640780 - B1F1 SINE Alu -32 117 1 7 1614 297 0 0 0 chr3 134959189 134959222 -24640561 + (TG)n Simple_repeat Simple_repeat 1 33 0 7 1614 315 0 0 0 chr3 134959222 134959256 -24640527 + (GA)n Simple_repeat Simple_repeat 1 35 0 7 1614 1086 63 7 7 chr3 134960107 134960250 -24639533 + B1_Mus1 SINE Alu 1 143 -5 7 1614 390 294 9 0 chr3 134960743 134960852 -24638931 - B1_Mur1 SINE Alu -38 111 2 7 1614 244 102 41 0 chr3 134961022 134961071 -24638712 + (TTTG)n Simple_repeat Simple_repeat 2 52 0 7 1614 938 162 0 0 chr3 134961109 134961257 -24638526 - B1_Mur4 SINE Alu -2 148 1 7 1614 351 0 0 0 chr3 134962084 134962123 -24637660 + (TG)n Simple_repeat Simple_repeat 1 39 0 7 1614 825 40 0 0 chr3 134962341 134962442 -24637341 + (TCTCCC)n Simple_repeat Simple_repeat 2 102 0 7 1614 253 171 43 0 chr3 134962460 134962530 -24637253 + RMER17C LTR ERVK 202 274 -136 7 1614 288 0 0 0 chr3 134962736 134962768 -24637015 + (ATTG)n Simple_repeat Simple_repeat 2 33 0 7 1614 388 86 17 0 chr3 134962785 134962850 -24636933 - B2_Mm2 SINE B2 -82 116 46 7 1614 1374 64 40 0 chr3 134962892 134963065 -24636718 - B2_Mm2 SINE B2 -14 181 2 7 1614 471 18 0 0 chr3 134963425 134963481 -24636302 + (TG)n Simple_repeat Simple_repeat 2 57 0 7 1614 25 0 0 0 chr3 134963738 134963763 -24636020 + AT_rich Low_complexity Low_complexity 1 25 0 7 1614 387 228 67 56 chr3 134963804 134963999 -24635784 + L1MB2 LINE L1 5952 6148 -23 7 1614 677 225 7 0 chr3 134964173 134964315 -24635468 - B1_Mus1 SINE Alu 0 148 6 7 1614 512 292 20 13 chr3 134964936 134965085 -24634698 + RSINE1 SINE B4 3 152 -13 7 1614 261 0 0 0 chr3 134965086 134965115 -24634668 + (CA)n Simple_repeat Simple_repeat 1 29 0 7 1614 916 294 61 57 chr3 134966044 134966469 -24633314 - Lx8 LINE L1 0 7473 7047 7 1614 315 0 0 0 chr3 134966969 134967004 -24632779 + (TTTG)n Simple_repeat Simple_repeat 3 37 0 7 1614 1341 86 21 0 chr3 134967397 134967584 -24632199 - B2_Mm2 SINE B2 -4 191 1 7 1614 474 276 100 20 chr3 134967753 134967953 -24631830 - MLT1A1 LTR MaLR -168 240 25 7 1614 335 270 8 50 chr3 134968862 134968983 -24630800 - PB1D10 SINE Alu -1 116 1 7 1614 22 0 0 0 chr3 134969046 134969068 -24630715 + AT_rich Low_complexity Low_complexity 1 22 0 7 1614 2787 134 106 6 chr3 134969123 134969596 -24630187 - RLTR28 LTR ERVL -4 520 1 7 1614 273 128 0 0 chr3 134970567 134970614 -24629169 + (CCCCG)n Simple_repeat Simple_repeat 5 51 0 7 1614 405 0 0 0 chr3 134970792 134970837 -24628946 + (TG)n Simple_repeat Simple_repeat 2 46 0 7 1614 1425 221 95 8 chr3 134971377 134971747 -24628036 - MTD LTR MaLR -17 402 1 7 1614 754 68 178 0 chr3 134971867 134971985 -24627798 + B2_Mm2 SINE B2 2 140 -55 7 1614 657 38 0 0 chr3 134971990 134972070 -24627713 + (GAAA)n Simple_repeat Simple_repeat 2 81 0 7 1614 869 189 0 7 chr3 134972074 134972213 -24627570 + B1_Mur2 SINE Alu 1 139 -10 7 1614 993 122 0 32 chr3 134972213 134972399 -24627384 + GA-rich Low_complexity Low_complexity 1 180 0 7 1614 352 258 38 47 chr3 134972715 134972821 -24626962 + PB1D10 SINE Alu 5 109 -8 7 1614 1426 207 59 56 chr3 134972843 134973079 -24626704 - ORR1D1 LTR MaLR 0 374 139 7 1614 1354 79 17 0 chr3 134973079 134973256 -24626527 + B2_Mm2 SINE B2 3 182 -13 7 1614 1426 207 59 56 chr3 134973256 134973392 -24626391 - ORR1D1 LTR MaLR -236 138 1 7 1614 615 259 58 16 chr3 134975306 134975494 -24624289 - MLT1A1 LTR MaLR -4 404 209 7 1614 432 0 0 0 chr3 134975567 134975615 -24624168 + (CA)n Simple_repeat Simple_repeat 2 49 0 7 1614 571 207 74 0 chr3 134975619 134975740 -24624043 - B1_Mur2 SINE Alu -2 147 18 7 1614 805 174 23 0 chr3 134975744 134975876 -24623907 + B1_Mur3 SINE Alu 1 135 -14 7 1614 216 97 0 0 chr3 134975877 134975908 -24623875 + (CAAG)n Simple_repeat Simple_repeat 1 31 0 7 1614 297 0 0 0 chr3 134976712 134976745 -24623038 + (TC)n Simple_repeat Simple_repeat 2 34 0 7 1614 279 0 0 0 chr3 134976745 134976775 -24623008 + (TG)n Simple_repeat Simple_repeat 2 32 0 7 1614 2554 163 69 38 chr3 134977197 134977746 -24622037 - RLTR12A LTR ERVK -2 566 1 7 1614 491 243 59 101 chr3 134978423 134978455 -24621328 + B3A SINE B2 36 58 -140 7 1614 1749 201 33 11 chr3 134978455 134978818 -24620965 + ORR1D1 LTR MaLR 1 371 -3 7 1614 491 243 59 101 chr3 134978818 134978954 -24620829 + B3A SINE B2 59 197 -1 7 1614 349 290 0 9 chr3 134980289 134980386 -24619397 + PB1D10 SINE Alu 11 107 -10 7 1614 239 54 27 0 chr3 134980386 134980423 -24619360 + (TAAA)n Simple_repeat Simple_repeat 2 39 0 7 1614 408 277 28 51 chr3 134980550 134980593 -24619190 + CYRA11_Mm Unknown Y-chromosome 132 169 -448 7 1614 1269 141 0 26 chr3 134980593 134980819 -24618964 - URR1B DNA MER1_type 0 225 6 7 1614 217 292 0 0 chr3 134980847 134980895 -24618888 + polypyrimidine Low_complexity Low_complexity 6 53 0 7 1614 254 216 132 26 chr3 134982289 134982303 -24617480 - PB1D10 SINE Alu 0 117 105 7 1614 276 53 0 0 chr3 134982303 134982341 -24617442 + (TTTTG)n Simple_repeat Simple_repeat 3 40 0 7 1614 254 216 132 26 chr3 134982341 134982402 -24617381 - PB1D10 SINE Alu -13 104 34 7 1614 327 49 0 0 chr3 134982828 134982869 -24616914 + (TG)n Simple_repeat Simple_repeat 2 42 0 7 1614 197 65 32 0 chr3 134984423 134984454 -24615329 + (CA)n Simple_repeat Simple_repeat 2 33 0 7 1614 734 187 7 22 chr3 134984457 134984594 -24615189 - B1_Mur3 SINE Alu -13 136 2 7 1614 317 310 54 8 chr3 134984480 134984610 -24615173 - B4 SINE B4 -87 205 70 7 1614 237 83 0 0 chr3 134984786 134984822 -24614961 + (TTTG)n Simple_repeat Simple_repeat 3 38 0 7 1614 908 168 7 7 chr3 134985166 134985177 -24614606 - B1_Mur4 SINE Alu 0 150 140 7 1614 324 64 0 0 chr3 134985177 134985224 -24614559 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 7 1614 908 168 7 7 chr3 134985224 134985362 -24614421 - B1_Mur4 SINE Alu -11 139 1 7 1614 1090 127 188 0 chr3 134986190 134986371 -24613412 - B3 SINE B2 0 216 2 7 1614 217 350 50 0 chr3 134987158 134987258 -24612525 + MIR SINE MIR 16 120 -142 7 1614 199 281 0 0 chr3 134988150 134988207 -24611576 + MIR SINE MIR 155 211 -51 7 1614 279 165 51 0 chr3 134988412 134988491 -24611292 + (TATATG)n Simple_repeat Simple_repeat 2 84 0 7 1614 1200 78 0 62 chr3 134988493 134988685 -24611098 - B2_Mm2 SINE B2 -9 186 7 7 1614 204 125 0 0 chr3 134988687 134988719 -24611064 + (TATATG)n Simple_repeat Simple_repeat 2 33 0 7 1614 249 339 51 68 chr3 134989756 134989873 -24609910 + MER5B DNA MER1_type 1 115 -63 7 1614 665 221 0 14 chr3 134990214 134990352 -24609431 - B1_Mus2 SINE Alu -10 137 2 7 1614 680 177 229 0 chr3 134990665 134990840 -24608943 + B3 SINE B2 2 216 0 7 1614 669 167 79 7 chr3 134991390 134991529 -24608254 - B1_Mur3 SINE Alu 0 149 1 7 1614 1099 156 35 10 chr3 134991617 134991818 -24607965 + B3 SINE B2 1 206 -10 7 1614 209 200 0 0 chr3 134992531 134992571 -24607212 + (CATATA)n Simple_repeat Simple_repeat 2 41 0 7 1614 253 102 17 17 chr3 134992974 134993034 -24606749 + (TTTG)n Simple_repeat Simple_repeat 2 61 0 7 1614 640 194 69 35 chr3 134993041 134993185 -24606598 - B1_Mur3 SINE Alu 0 149 1 7 1614 286 298 21 11 chr3 134993296 134993391 -24606392 - ID_B1 SINE B4 0 224 129 7 1614 237 246 98 0 chr3 134993344 134993405 -24606378 - PB1D10 SINE Alu -23 94 28 7 1614 296 311 89 78 chr3 134994230 134994512 -24605271 - B4 SINE B4 -7 285 1 7 1614 1029 90 169 0 chr3 134994600 134994766 -24605017 - B2_Mm2 SINE B2 -1 194 1 7 1614 1187 159 87 0 chr3 134994798 134995006 -24604777 - URR1A DNA MER1_type 0 226 1 7 1614 247 254 17 0 chr3 134995855 134995914 -24603869 + GA-rich Low_complexity Low_complexity 3 62 0 7 1614 331 111 187 40 chr3 134996041 134996116 -24603667 - B1_Mus2 SINE Alu 0 147 62 7 1614 1004 312 34 54 chr3 134996170 134996617 -24603166 + Tigger7 DNA MER2_type 7 444 -2047 7 1614 405 258 99 40 chr3 134996683 134997006 -24602777 - RMER17C LTR ERVK -68 342 1 7 1614 22 0 0 0 chr3 134997690 134997712 -24602071 + AT_rich Low_complexity Low_complexity 1 22 0 7 1614 208 204 23 0 chr3 134997713 134997757 -24602026 + (TA)n Simple_repeat Simple_repeat 1 45 0 8 1614 1317 144 49 33 chr3 134997758 134998002 -24601781 - L1_Mur2 LINE L1 -1661 4216 3969 8 1614 684 205 0 0 chr3 134998025 134998176 -24601607 + (TA)n Simple_repeat Simple_repeat 1 151 0 8 1614 498 278 105 0 chr3 134998212 134998421 -24601362 - MER2 DNA MER2_type 0 345 115 8 1614 230 189 19 0 chr3 134998876 134998929 -24600854 - U2 snRNA snRNA -124 64 11 8 1614 443 296 9 0 chr3 134999748 134999856 -24599927 - PB1D10 SINE Alu 0 117 9 8 1614 589 239 14 27 chr3 135000061 135000207 -24599576 + B1F SINE Alu 3 146 -3 1 1614 779 272 53 89 chr3 135000211 135000514 -24599269 + B4A SINE B4 1 292 0 2 1614 618 210 0 0 chr3 135000517 135000752 -24599031 + (CA)n Simple_repeat Simple_repeat 1 235 0 3 1614 339 25 0 0 chr3 135002140 135002180 -24597603 + (TG)n Simple_repeat Simple_repeat 2 41 0 4 1614 1736 166 104 22 chr3 135002312 135002768 -24597015 - RLTR25B LTR ERVK 0 1028 480 5 1614 7611 82 21 9 chr3 135002771 135003909 -24595874 - L1_Mus4 LINE L1 0 6636 5484 6 201 2221 183 40 67 chr3 135003909 135004389 -24595394 - RLTR25B LTR ERVK -561 467 1 5 1615 537 275 17 70 chr3 135004916 135005088 -24594695 + RSINE1 SINE B4 3 165 0 7 1615 201 121 0 0 chr3 135005662 135005695 -24594088 + (T)n Simple_repeat Simple_repeat 1 33 0 8 1615 1275 75 0 0 chr3 135005804 135006175 -24593608 + (CA)n Simple_repeat Simple_repeat 1 371 0 9 1615 23 0 0 0 chr3 135006190 135006213 -24593570 + AT_rich Low_complexity Low_complexity 1 23 0 1 1615 221 277 102 65 chr3 135006919 135007027 -24592756 + B1F SINE Alu 38 149 0 1 1615 692 282 165 51 chr3 135007220 135007721 -24592062 + L1MC LINE L1 5258 5822 -357 1 1615 219 114 0 0 chr3 135007758 135007793 -24591990 + (CAGA)n Simple_repeat Simple_repeat 2 36 0 1 1615 225 226 19 0 chr3 135007809 135007862 -24591921 + ID SINE ID 1 54 -170 1 1615 255 254 14 27 chr3 135007889 135007962 -24591821 + L1_Mur3 LINE L1 3658 3729 -2151 1 1615 727 221 8 0 chr3 135008227 135008358 -24591425 - B1_Mur1 SINE Alu -14 135 4 1 1615 252 308 32 42 chr3 135008640 135008735 -24591048 - L2c LINE L2 -9 3378 3285 1 1615 23 68 0 0 chr3 135008950 135008994 -24590789 + AT_rich Low_complexity Low_complexity 1 44 0 1 1615 1368 90 39 6 chr3 135009982 135010161 -24589622 + B2_Mm2 SINE B2 3 187 -8 1 1615 251 236 18 0 chr3 135010723 135010778 -24589005 + PB1D10 SINE Alu 10 65 -52 2 1615 504 312 148 34 chr3 135012037 135012237 -24587546 + B4A SINE B4 1 224 -68 2 1615 214 290 0 46 chr3 135012237 135012302 -24587481 + B4A SINE B4 4 65 -227 2 1615 458 182 20 0 chr3 135012394 135012493 -24587290 + (TATG)n Simple_repeat Simple_repeat 3 103 0 2 1615 1112 192 5 24 chr3 135012536 135012749 -24587034 + Lx9 LINE L1 6412 6620 -1024 2 1615 832 140 12 47 chr3 135012749 135012921 -24586862 + L1_Rod LINE L1 5308 5473 -374 2 1615 1795 192 107 37 chr3 135012919 135013380 -24586403 - L1_Rod LINE L1 -538 5309 4811 2 1615 3394 45 5 12 chr3 135013380 135013783 -24586000 - MTB LTR MaLR 0 400 1 2 1615 1795 192 107 37 chr3 135013783 135013834 -24585949 - L1_Rod LINE L1 -1037 4810 4761 2 1615 246 252 76 93 chr3 135013848 135013966 -24585817 + B3 SINE B2 101 216 0 2 1615 3119 148 39 4 chr3 135013988 135014498 -24585285 - RLTR11A LTR ERVK 0 528 1 2 1615 3382 219 88 44 chr3 135014499 135015463 -24584320 - MYSERV16_I-int LTR ERVK -1 2325 1319 2 1615 1290 140 75 15 chr3 135015463 135015728 -24584055 - RLTR11A LTR ERVK -80 448 146 3 1615 1046 277 110 43 chr3 135015741 135016062 -24583721 - L1M2 LINE L1 -4037 2812 2477 3 1615 568 230 26 17 chr3 135016062 135016177 -24583606 - PB1D10 SINE Alu -1 116 1 3 1615 1046 277 110 43 chr3 135016177 135016390 -24583393 - L1M2 LINE L1 -4373 2476 2242 3 1615 604 226 57 0 chr3 135017389 135017513 -24582270 + RSINE1 SINE B4 2 132 -33 3 1615 22 35 0 0 chr3 135017518 135017547 -24582236 + AT_rich Low_complexity Low_complexity 1 29 0 3 1615 270 179 0 0 chr3 135017600 135017656 -24582127 + CT-rich Low_complexity Low_complexity 2 57 0 3 1615 306 0 0 0 chr3 135017659 135017693 -24582090 + (TG)n Simple_repeat Simple_repeat 2 35 0 3 1615 472 279 36 9 chr3 135017707 135017819 -24581964 - RSINE1 SINE B4 -46 119 5 3 1615 437 291 106 51 chr3 135018083 135018358 -24581425 + B4A SINE B4 2 291 -1 3 1615 355 242 72 62 chr3 135018451 135018548 -24581235 + PB1D7 SINE Alu 14 111 -9 3 1615 588 184 17 0 chr3 135019316 135019555 -24580228 + (TCCA)n Simple_repeat Simple_repeat 1 243 0 4 1615 1351 78 55 11 chr3 135020023 135020205 -24579578 - B2_Mm2 SINE B2 -4 191 2 4 1615 417 17 17 0 chr3 135020321 135020380 -24579403 - L1Md_F2 LINE L1 -1 6581 6522 4 1615 341 375 0 0 chr3 135020506 135020666 -24579117 + GA-rich Low_complexity Low_complexity 3 162 0 4 1615 8121 151 37 25 chr3 135021804 135023332 -24576451 - Lx5 LINE L1 0 7050 5495 4 1615 3457 163 36 33 chr3 135023330 135024004 -24575779 + L1_Mur2 LINE L1 3221 3896 -1981 4 1615 469 276 40 0 chr3 135024098 135024242 -24575541 + L1M4 LINE L1 3705 3883 -2263 4 1615 641 208 39 59 chr3 135024646 135024799 -24574984 + B1_Mur4 SINE Alu 1 150 0 4 1615 205 75 0 70 chr3 135024802 135024845 -24574938 + (CAAAAA)n Simple_repeat Simple_repeat 4 43 0 4 1615 442 314 196 0 chr3 135025608 135025828 -24573955 + L1MCa LINE L1 2 264 -6244 4 1615 829 75 22 0 chr3 135026407 135026432 -24573351 - B1_Mus2 SINE Alu 0 150 3 5 1615 468 222 8 93 chr3 135026432 135026537 -24573246 - MT2B LTR ERVL -338 263 167 5 1615 5076 65 8 5 chr3 135026537 135027157 -24572626 - L1_Mus2 LINE L1 -18 6548 5927 5 1615 468 222 8 93 chr3 135027157 135027180 -24572603 - MT2B LTR ERVL -435 166 146 5 1615 524 298 117 131 chr3 135027210 135027661 -24572122 + L1MCa LINE L1 877 1354 -5154 4 1615 337 208 14 0 chr3 135027661 135027733 -24572050 + PB1D9 SINE Alu 22 94 -26 5 1615 524 298 117 131 chr3 135027733 135028227 -24571556 + L1MCa LINE L1 1355 1879 -4629 4 1615 261 215 88 44 chr3 135028526 135028594 -24571189 - ORR1D2 LTR MaLR -72 298 228 5 1615 831 298 87 31 chr3 135028598 135029062 -24570721 + L1M2 LINE L1 4815 5288 -592 5 1615 672 86 25 17 chr3 135029062 135029180 -24570603 + (GAAA)n Simple_repeat Simple_repeat 2 120 0 5 1615 604 274 7 14 chr3 135029207 135029355 -24570428 + RSINE1 SINE B4 3 149 -16 5 1615 374 61 0 0 chr3 135029586 135029635 -24570148 + B1_Mus2 SINE Alu 81 129 -18 5 1615 1490 91 0 5 chr3 135030281 135030469 -24569314 + B2_Mm2 SINE B2 2 188 -7 5 1615 435 271 10 0 chr3 135030478 135030628 -24569155 + L1M2 LINE L1 5298 5451 -705 5 1615 733 230 135 3 chr3 135030626 135030966 -24568817 + L1MCa LINE L1 2934 3318 -3003 4 1615 490 252 54 4 chr3 135031128 135031318 -24568465 - L1MA4A LINE L1 -461 5842 5627 6 1615 3504 46 5 5 chr3 135031323 135031719 -24568064 + MTA_Mm LTR MaLR 1 396 0 6 1615 3534 40 5 2 chr3 135031719 135032164 -24567619 + MTA_Mm-int LTR MaLR 1 446 -652 6 1615 739 44 0 0 chr3 135032162 135032253 -24567530 + MTA_Mm LTR MaLR 306 396 0 6 1615 712 294 8 13 chr3 135032253 135032491 -24567292 - L1MA4A LINE L1 -677 5623 5387 6 1615 288 242 96 29 chr3 135032521 135032657 -24567126 - L1MA4A LINE L1 -1697 4446 4302 6 1615 1299 64 98 6 chr3 135032952 135033125 -24566658 - B2_Mm2 SINE B2 -6 189 1 6 1615 260 167 55 18 chr3 135033334 135033389 -24566394 - RSINE1 SINE B4 -41 124 68 6 1615 189 0 0 0 chr3 135033406 135033427 -24566356 + (CACTG)n Simple_repeat Simple_repeat 1 21 0 6 1615 409 273 32 115 chr3 135033446 135033603 -24566180 - B4 SINE B4 -147 145 2 6 1615 384 22 0 0 chr3 135033733 135033778 -24566005 + (CA)n Simple_repeat Simple_repeat 2 46 0 6 1615 904 140 41 20 chr3 135033778 135033924 -24565859 + B1_Mur4 SINE Alu 2 150 0 6 1615 343 370 7 68 chr3 135034440 135034588 -24565195 - RSINE1 SINE B4 -2 163 25 6 1615 25 0 0 0 chr3 135035045 135035070 -24564713 + AT_rich Low_complexity Low_complexity 1 25 0 7 1615 228 123 0 76 chr3 135035858 135035937 -24563846 + (CACCG)n Simple_repeat Simple_repeat 2 74 0 7 1615 1215 56 0 7 chr3 135037509 135037653 -24562130 + B1_Mm SINE Alu 5 147 0 7 1615 215 223 196 78 chr3 135037713 135037815 -24561968 + PB1D7 SINE Alu 2 115 -5 7 1615 354 276 18 66 chr3 135038231 135038398 -24561385 - RMER12 LTR ERVK -394 928 770 7 1615 294 314 0 0 chr3 135038404 135038474 -24561309 - ID4 SINE ID -10 73 4 7 1615 250 202 64 53 chr3 135038729 135038823 -24560960 - L1M5 LINE L1 -812 5367 5273 7 1615 1168 204 14 5 chr3 135038824 135039031 -24560752 - B3 SINE B2 -6 210 2 7 1615 910 272 65 50 chr3 135039133 135039473 -24560310 - MLT1B LTR MaLR -45 345 1 7 1615 237 308 63 38 chr3 135039886 135040020 -24559763 - MIRc SINE MIR -93 183 45 7 1615 548 186 137 15 chr3 135040238 135040369 -24559414 - B1_Mus1 SINE Alu -1 147 1 8 1615 471 264 74 68 chr3 135040980 135041288 -24558495 - L1M5 LINE L1 -1449 4697 4377 7 1615 189 0 0 0 chr3 135041288 135041309 -24558474 + (TTTA)n Simple_repeat Simple_repeat 3 23 0 8 1615 784 209 0 20 chr3 135041317 135041468 -24558315 - B1_Mur3 SINE Alu 0 149 2 8 1615 471 264 74 68 chr3 135041468 135041516 -24558267 - L1M5 LINE L1 -1777 4369 4330 7 1615 382 127 113 0 chr3 135041582 135041653 -24558130 - B3 SINE B2 0 216 138 8 1615 1748 205 58 37 chr3 135041917 135042327 -24557456 + MTD LTR MaLR 1 419 0 8 1615 3636 239 86 31 chr3 135042327 135043382 -24556401 + MTD-int LTR MaLR 1 1113 -145 8 1615 916 181 14 0 chr3 135043395 135043539 -24556244 - B1_Mus2 SINE Alu 0 147 2 8 1615 463 246 86 26 chr3 135043559 135043676 -24556107 - B1_Mur1 SINE Alu -3 146 23 8 1615 577 212 29 0 chr3 135043671 135043808 -24555975 + MTD-int LTR MaLR 1116 1256 -2 8 1615 386 257 9 51 chr3 135043814 135043935 -24555848 + MTD LTR MaLR 3 116 -305 8 1615 1292 61 0 0 chr3 135044164 135044312 -24555471 + B1_Mus1 SINE Alu 1 148 0 8 1615 1492 61 39 0 chr3 135044376 135044556 -24555227 + B2_Mm2 SINE B2 1 187 -8 8 1615 227 236 36 18 chr3 135044664 135044720 -24555063 + PB1D9 SINE Alu 1 57 -63 8 1615 256 217 184 61 chr3 135044748 135044833 -24554950 + L1M4 LINE L1 5224 5304 -842 9 1615 466 324 0 0 chr3 135044833 135044941 -24554842 + PB1D7 SINE Alu 1 108 -12 9 1615 518 0 16 0 chr3 135044948 135045010 -24554773 + (TG)n Simple_repeat Simple_repeat 1 63 0 9 1615 429 241 185 31 chr3 135045010 135045214 -24554569 + L1M4 LINE L1 5310 5573 -610 9 1615 236 302 208 0 chr3 135047462 135047558 -24552225 + PB1 SINE Alu 1 116 -11 9 1615 1110 253 66 15 chr3 135047724 135047997 -24551786 - B4A SINE B4 -4 288 2 9 1615 300 242 15 0 chr3 135048444 135048510 -24551273 - RSINE1 SINE B4 -12 153 87 9 1615 316 261 32 32 chr3 135048704 135048799 -24550984 - RSINE1 SINE B4 -68 97 3 9 1615 1116 209 19 0 chr3 135048826 135049037 -24550746 - B3 SINE B2 0 216 2 9 1615 21 36 0 0 chr3 135049328 135049356 -24550427 + AT_rich Low_complexity Low_complexity 1 28 0 9 1615 723 182 21 7 chr3 135049421 135049565 -24550218 - B1F SINE Alu 0 149 4 9 1615 421 279 79 24 chr3 135049636 135049801 -24549982 + L1M3 LINE L1 5041 5214 -926 9 1615 506 276 98 26 chr3 135050498 135050890 -24548893 - L1M3 LINE L1 -1488 4655 4230 1 1615 338 281 57 105 chr3 135050901 135051171 -24548612 - B4 SINE B4 -11 281 56 1 1615 306 0 0 0 chr3 135051185 135051219 -24548564 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 1 1615 1160 83 0 0 chr3 135051220 135051377 -24548406 - B2_Mm2 SINE B2 -37 158 2 1 1615 340 164 29 15 chr3 135051378 135051446 -24548337 - B4A SINE B4 -223 69 1 1 1615 1698 243 92 81 chr3 135051450 135051863 -24547920 - L1M3 LINE L1 -1901 4239 3822 1 1615 696 294 44 10 chr3 135051863 135052066 -24547717 + B3 SINE B2 1 210 -6 1 1615 1698 243 92 81 chr3 135052066 135052345 -24547438 - L1M3 LINE L1 -2319 3821 3539 1 1615 334 312 0 43 chr3 135054074 135054448 -24545335 + (CCCA)n Simple_repeat Simple_repeat 1 357 0 1 1615 229 229 0 176 chr3 135054651 135054725 -24545058 - B1F1 SINE Alu -14 103 43 1 1615 385 298 123 0 chr3 135055734 135055848 -24543935 - RSINE1 SINE B4 -35 130 3 1 1615 207 231 0 0 chr3 135055978 135056017 -24543766 + (TA)n Simple_repeat Simple_repeat 2 40 0 1 1615 249 300 30 10 chr3 135056030 135056131 -24543652 - L1MC LINE L1 -2166 5716 5614 1 1615 1241 117 31 26 chr3 135056586 135056779 -24543004 - B2_Mm2 SINE B2 -1 194 1 1 1615 267 248 190 78 chr3 135057386 135057644 -24542139 + B4 SINE B4 1 287 -5 1 1615 21 57 0 0 chr3 135057667 135057702 -24542081 + AT_rich Low_complexity Low_complexity 1 35 0 1 1615 451 306 70 46 chr3 135058085 135058369 -24541414 + B4A SINE B4 2 292 0 1 1615 257 234 141 27 chr3 135058382 135058531 -24541252 - RLTR21 LTR ERVK -317 1255 1090 1 1615 755 203 14 7 chr3 135058639 135058783 -24541000 + B1_Mur2 SINE Alu 5 149 0 1 1615 26 64 0 0 chr3 135058785 135058832 -24540951 + AT_rich Low_complexity Low_complexity 1 47 0 1 1615 1768 168 149 32 chr3 135059058 135059433 -24540350 - MTD LTR MaLR 0 419 1 1 1615 231 333 65 32 chr3 135059684 135059870 -24539913 + MIRb SINE MIR 47 238 -30 1 1615 291 250 17 0 chr3 135060220 135060280 -24539503 - ID4 SINE ID -20 63 3 1 1615 608 178 135 30 chr3 135061159 135061292 -24538491 + B1_Mur1 SINE Alu 2 148 -1 1 1615 240 340 27 40 chr3 135061319 135061469 -24538314 - RLTR17 LTR ERVK -266 426 279 1 1615 408 257 8 34 chr3 135061511 135061628 -24538155 - RLTR16 LTR ERVK -368 137 24 1 1615 474 227 103 29 chr3 135061680 135061816 -24537967 + B1F1 SINE Alu 1 146 -3 1 1615 459 328 156 0 chr3 135061890 135062076 -24537707 + ID_B1 SINE B4 1 215 -9 1 1615 622 279 24 48 chr3 135062106 135062313 -24537470 + B3 SINE B2 1 202 -14 1 1615 892 286 9 5 chr3 135062335 135062549 -24537234 + ID_B1 SINE B4 5 219 -5 1 1615 602 224 151 11 chr3 135062579 135062764 -24537019 + B4 SINE B4 70 280 -12 1 1615 252 0 0 0 chr3 135062837 135062865 -24536918 + (CA)n Simple_repeat Simple_repeat 2 29 0 1 1615 475 304 75 30 chr3 135062909 135063174 -24536609 + L1MB3 LINE L1 5603 5879 -304 1 1615 340 163 438 39 chr3 135063330 135063483 -24536300 + B3 SINE B2 1 214 -2 1 1615 333 304 29 76 chr3 135063488 135063659 -24536124 + RSINE1 SINE B4 3 165 0 1 1615 785 127 8 0 chr3 135063791 135063909 -24535874 - B1_Mus2 SINE Alu -27 120 2 1 1615 417 254 61 9 chr3 135063956 135064071 -24535712 + RSINE1 SINE B4 24 144 -21 1 1615 698 187 14 35 chr3 135064489 135064633 -24535150 - B1_Mur1 SINE Alu -6 143 3 1 1615 362 291 19 10 chr3 135064665 135064769 -24535014 + RSINE1 SINE B4 2 106 -59 1 1615 1120 216 63 38 chr3 135065627 135065944 -24533839 - RLTR11A2 LTR ERVK -202 325 1 1 1615 374 250 12 0 chr3 135065944 135066027 -24533756 + RSINE1 SINE B4 31 114 -51 1 1615 1307 41 0 0 chr3 135066561 135066707 -24533076 + B1_Mus2 SINE Alu 2 147 0 1 1615 1338 80 51 0 chr3 135066940 135067116 -24532667 - B2_Mm1t SINE B2 -6 187 3 1 1615 790 125 0 0 chr3 135067142 135067262 -24532521 - B2_Mm2 SINE B2 -7 188 69 1 1615 203 309 18 0 chr3 135068666 135068721 -24531062 + MIRb SINE MIR 213 268 0 1 1615 356 252 48 10 chr3 135068824 135068925 -24530858 + B4A SINE B4 99 203 -89 1 1615 2233 119 3 3 chr3 135068925 135069263 -24530520 + ORR1A1 LTR MaLR 1 338 -8 1 1615 273 217 14 14 chr3 135069557 135069627 -24530156 + ID4 SINE ID 5 74 -9 1 1615 957 204 17 6 chr3 135069742 135069906 -24529877 + B3 SINE B2 2 167 -49 1 1615 204 97 0 0 chr3 135069906 135069937 -24529846 + (CAGA)n Simple_repeat Simple_repeat 4 34 0 1 1615 957 204 17 6 chr3 135069937 135069949 -24529834 + B3 SINE B2 168 179 -37 1 1615 327 174 0 0 chr3 135071056 135071142 -24528641 + (CA)n Simple_repeat Simple_repeat 1 86 0 1 1615 299 268 0 35 chr3 135072013 135072098 -24527685 + MT2B LTR ERVL 169 250 -351 1 1615 355 157 50 0 chr3 135072032 135072107 -24527676 + B1_Mur3 SINE Alu 29 109 -11 1 1615 1320 120 38 0 chr3 135072306 135072490 -24527293 - B2_Mm2 SINE B2 -4 191 1 1 1615 595 251 166 17 chr3 135072648 135072883 -24526900 - B4A SINE B4 -18 274 5 1 1615 416 165 24 0 chr3 135072888 135072973 -24526810 + CT-rich Low_complexity Low_complexity 3 89 0 1 1615 270 339 36 0 chr3 135073393 135073505 -24526278 + B1_Mur1 SINE Alu 18 133 -16 1 1615 333 77 39 0 chr3 135074633 135074685 -24525098 - Lx6 LINE L1 -6 7454 7401 1 1615 593 268 17 56 chr3 135075445 135075623 -24524160 - B4A SINE B4 -1 291 121 1 1615 396 164 0 0 chr3 135075627 135075688 -24524095 - B3 SINE B2 -155 61 1 1 1615 199 284 21 83 chr3 135075731 135075827 -24523956 + L2a LINE L2 3299 3388 -38 1 1615 413 336 35 14 chr3 135076101 135076246 -24523537 - RSINE1 SINE B4 -16 149 2 1 1615 465 261 8 98 chr3 135076279 135076402 -24523381 + B4 SINE B4 3 114 -178 1 1615 404 258 41 10 chr3 135076415 135076513 -24523270 + B4 SINE B4 181 281 -11 1 1615 241 200 162 0 chr3 135078109 135078189 -24521594 + B1_Mur3 SINE Alu 9 101 -48 1 1615 222 37 0 0 chr3 135078191 135078218 -24521565 + (TAAA)n Simple_repeat Simple_repeat 3 29 0 1 1615 7422 6 0 1 chr3 135078374 135079152 -24520631 + L1Md_T LINE L1 5806 6582 0 1 1615 285 253 112 12 chr3 135079170 135079250 -24520533 - B1F SINE Alu -16 133 46 1 1615 192 40 0 0 chr3 135079905 135079930 -24519853 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 1 1615 262 279 36 48 chr3 135080342 135080425 -24519358 - ID4_ SINE ID 0 83 2 1 1615 203 237 0 0 chr3 135080476 135080514 -24519269 + (TG)n Simple_repeat Simple_repeat 1 38 0 1 1615 651 239 109 6 chr3 135080525 135080681 -24519102 - ID_B1 SINE B4 -51 173 2 1 1615 278 235 72 14 chr3 135081547 135081616 -24518167 + B1F SINE Alu 48 120 -29 1 1615 900 244 35 20 chr3 135081638 135081839 -24517944 + B3 SINE B2 2 205 -11 1 1615 202 329 13 0 chr3 135082141 135082217 -24517566 + L2a LINE L2 3349 3425 -1 1 1615 192 77 0 0 chr3 135082294 135082320 -24517463 + (CATA)n Simple_repeat Simple_repeat 2 27 0 1 1615 780 123 65 16 chr3 135082332 135082456 -24517327 - B3 SINE B2 -86 130 1 1 1615 482 291 105 29 chr3 135082850 135083059 -24516724 - L1ME2 LINE L1 -280 5884 5660 1 1615 846 186 14 0 chr3 135083161 135083301 -24516482 - B1_Mus2 SINE Alu 0 147 6 1 1615 336 235 163 0 chr3 135084145 135084243 -24515540 + ID_B1 SINE B4 102 215 -9 1 1615 22 70 0 0 chr3 135086066 135086109 -24513674 + GC_rich Low_complexity Low_complexity 1 43 0 1 1615 198 91 0 0 chr3 135086127 135086160 -24513623 + (CCCCG)n Simple_repeat Simple_repeat 4 36 0 1 1615 22 80 0 0 chr3 135086378 135086428 -24513355 + GC_rich Low_complexity Low_complexity 1 50 0 1 1615 572 60 0 57 chr3 135087623 135087711 -24512072 + L1Md_F2 LINE L1 6500 6582 0 1 1615 243 0 0 0 chr3 135088562 135088589 -24511194 + (TG)n Simple_repeat Simple_repeat 1 27 0 1 1615 180 0 0 0 chr3 135088589 135088608 -24511175 + (GA)n Simple_repeat Simple_repeat 1 20 0 1 1615 963 242 24 5 chr3 135088812 135089020 -24510763 - B3 SINE B2 -4 212 1 1 1615 1024 235 85 96 chr3 135089109 135089542 -24510241 + MT2A LTR ERVL 1 560 -41 1 1615 186 209 0 0 chr3 135089569 135089612 -24510171 + (TAGA)n Simple_repeat Simple_repeat 4 46 0 1 1615 1359 107 37 0 chr3 135089892 135090079 -24509704 + B2_Mm2 SINE B2 2 195 0 1 1615 440 258 34 0 chr3 135090101 135090190 -24509593 - PB1D10 SINE Alu -13 104 13 1 1615 485 270 109 30 chr3 135090520 135090822 -24508961 - L1ME3A LINE L1 -198 5975 5650 1 1615 270 0 0 0 chr3 135091027 135091057 -24508726 + (TG)n Simple_repeat Simple_repeat 2 31 0 1 1615 618 248 99 0 chr3 135091061 135091222 -24508561 - B4A SINE B4 -8 284 108 1 1615 417 200 0 48 chr3 135091667 135091751 -24508032 + PB1D9 SINE Alu 1 80 -70 1 1615 1196 41 13 40 chr3 135091751 135091902 -24507881 + B1_Mus2 SINE Alu 1 147 0 1 1615 272 304 19 29 chr3 135092080 135092185 -24507598 + MIRc SINE MIR 39 142 -126 1 1615 269 329 116 29 chr3 135092854 135093026 -24506757 - MLT1H1 LTR MaLR -70 485 299 1 1615 246 359 39 0 chr3 135093089 135093167 -24506616 - MLT1H1 LTR MaLR -417 178 98 1 1615 336 268 62 23 chr3 135093324 135093454 -24506329 + MLT1A1 LTR MaLR 3 137 -271 1 1615 608 176 89 44 chr3 135093899 135094049 -24505734 - ID_B1 SINE B4 -56 236 78 1 1615 460 315 0 59 chr3 135094476 135094611 -24505172 + RSINE1 SINE B4 9 135 -30 1 1615 283 273 0 0 chr3 135094618 135094692 -24505091 + A-rich Low_complexity Low_complexity 1 74 0 1 1615 1155 85 0 0 chr3 135094692 135094833 -24504950 + B1_Mus1 SINE Alu 2 142 -6 1 1615 283 273 0 0 chr3 135094833 135094857 -24504926 + A-rich Low_complexity Low_complexity 75 98 0 2 1615 1318 85 10 36 chr3 135094942 135095138 -24504645 + B2_Mm2 SINE B2 5 195 0 2 1615 348 241 15 42 chr3 135095351 135095480 -24504303 - MTE2a LTR MaLR -32 387 266 2 1615 543 219 58 16 chr3 135095870 135095991 -24503792 + B1_Mur2 SINE Alu 24 149 0 2 1615 476 282 48 21 chr3 135096053 135096198 -24503585 + B1F2 SINE Alu 1 149 0 2 1615 1044 220 15 5 chr3 135096353 135096554 -24503229 - B3 SINE B2 -4 212 10 2 1615 891 320 81 52 chr3 135096813 135097221 -24502562 - MLT2B2 LTR ERVL -74 441 22 2 1615 254 245 189 11 chr3 135097565 135097660 -24502123 - ID_B1 SINE B4 -22 202 91 2 1615 326 217 170 21 chr3 135097575 135097669 -24502114 - B1F1 SINE Alu -40 109 2 2 1615 231 203 95 0 chr3 135097726 135097800 -24501983 - L1MD LINE L1 -607 5752 5672 2 1615 270 241 92 0 chr3 135097921 135098008 -24501775 - PB1D7 SINE Alu -24 96 2 2 1615 244 263 210 8 chr3 135098218 135098263 -24501520 - ID_B1 SINE B4 0 224 171 2 1615 1074 191 34 29 chr3 135098263 135098289 -24501494 - B3 SINE B2 -10 206 180 2 1615 249 33 0 0 chr3 135098289 135098319 -24501464 + (TG)n Simple_repeat Simple_repeat 2 31 0 2 1615 1074 191 34 29 chr3 135098319 135098497 -24501286 - B3 SINE B2 -37 179 1 2 1615 244 263 210 8 chr3 135098497 135098570 -24501213 - ID_B1 SINE B4 -54 170 83 2 1615 247 271 174 68 chr3 135098570 135098777 -24501006 + Charlie4a DNA MER1_type 64 300 -208 2 1615 583 301 61 14 chr3 135098777 135098989 -24500794 - ID_B1 SINE B4 -1 223 2 2 1615 247 271 174 68 chr3 135098989 135099149 -24500634 + Charlie4a DNA MER1_type 301 470 -38 2 1615 331 266 82 9 chr3 135099470 135099580 -24500203 + MIR SINE MIR 23 140 -122 2 1615 267 360 87 18 chr3 135099809 135100038 -24499745 - MIRc SINE MIR -18 250 6 2 1615 275 175 35 17 chr3 135100185 135100243 -24499540 + MER5A1 DNA MER1_type 84 142 -24 2 1615 24 32 0 0 chr3 135101868 135101899 -24497884 + GC_rich Low_complexity Low_complexity 1 31 0 2 1615 22 35 0 0 chr3 135101953 135101982 -24497801 + GC_rich Low_complexity Low_complexity 1 29 0 2 1615 217 192 0 37 chr3 135102024 135102078 -24497705 + (CGGG)n Simple_repeat Simple_repeat 3 54 0 2 1615 207 245 0 0 chr3 135102330 135102379 -24497404 + C-rich Low_complexity Low_complexity 4 52 0 2 1615 366 23 0 0 chr3 135103801 135103844 -24495939 + (TG)n Simple_repeat Simple_repeat 2 44 0 2 1615 21 0 0 0 chr3 135105405 135105426 -24494357 + AT_rich Low_complexity Low_complexity 1 21 0 2 1615 187 265 57 75 chr3 135105446 135105499 -24494284 - MIRm SINE MIR -196 80 23 2 1615 407 264 61 46 chr3 135106313 135106444 -24493339 - RSINE1 SINE B4 -29 136 4 2 1615 268 262 81 36 chr3 135106569 135106680 -24493103 - PB1D10 SINE Alu -1 116 1 2 1615 704 140 161 8 chr3 135106887 135107017 -24492766 + B1_Mur4 SINE Alu 1 150 0 2 1615 679 224 124 17 chr3 135109393 135109570 -24490213 + B3A SINE B2 2 197 -1 2 1615 774 208 56 0 chr3 135110152 135110296 -24489487 + B3 SINE B2 38 189 -27 2 1615 234 304 165 0 chr3 135111519 135111598 -24488185 - B4A SINE B4 -192 100 9 2 1615 1220 82 0 0 chr3 135111927 135112074 -24487709 + B1_Mm SINE Alu 1 147 0 2 1615 443 255 80 87 chr3 135112445 135112595 -24487188 - B1_Mur3 SINE Alu 0 149 1 2 1615 433 218 0 33 chr3 135113038 135113128 -24486655 - B3A SINE B2 -48 150 64 2 1615 1398 49 91 5 chr3 135113241 135113427 -24486356 + L1Md_F2 LINE L1 6377 6578 -4 2 1615 968 109 73 0 chr3 135114139 135114276 -24485507 + B1_Mus2 SINE Alu 1 147 0 2 1615 266 247 137 0 chr3 135114344 135114417 -24485366 + PB1 SINE Alu 23 105 -22 2 1615 343 250 97 11 chr3 135114473 135114566 -24485217 + B3A SINE B2 1 101 -97 2 1615 1454 53 21 31 chr3 135114856 135115049 -24484734 - B2_Mm1t SINE B2 0 193 3 2 1615 521 284 92 29 chr3 135115126 135115300 -24484483 + B3A SINE B2 9 193 -5 2 1615 222 271 0 114 chr3 135115343 135115422 -24484361 + ID SINE ID 2 71 -153 2 1615 326 92 28 0 chr3 135115925 135115985 -24483798 - B1_Mus1 SINE Alu -37 83 18 2 1615 243 0 0 0 chr3 135116362 135116389 -24483394 + (TC)n Simple_repeat Simple_repeat 2 28 0 2 1615 423 0 0 0 chr3 135116389 135116435 -24483348 + (TG)n Simple_repeat Simple_repeat 2 48 0 2 1615 1390 83 0 37 chr3 135117276 135117464 -24482319 + B2_Mm2 SINE B2 1 181 -14 2 1615 1148 108 0 0 chr3 135117741 135117889 -24481894 + B1_Mus1 SINE Alu 1 148 0 2 1615 371 283 38 84 chr3 135119147 135119278 -24480505 - RSINE1 SINE B4 -40 125 1 2 1615 253 346 0 12 chr3 135119449 135119531 -24480252 - B1F SINE Alu -58 91 11 2 1615 484 307 0 73 chr3 135120818 135120969 -24478814 - B1F SINE Alu -8 141 2 2 1615 372 276 144 36 chr3 135121572 135121711 -24478072 - RSINE1 SINE B4 -1 164 11 2 1615 213 264 57 0 chr3 135122308 135122361 -24477422 + PB1D10 SINE Alu 19 74 -43 2 1615 1578 53 11 5 chr3 135123123 135123312 -24476471 + B2_Mm1t SINE B2 2 191 -2 2 1615 498 244 91 130 chr3 135123323 135123554 -24476229 + ID_B1 SINE B4 3 224 0 2 1615 353 271 122 99 chr3 135123799 135123971 -24475812 - B4A SINE B4 -116 176 1 2 1615 534 302 34 34 chr3 135124010 135124185 -24475598 - B3A SINE B2 -15 183 9 2 1615 186 43 0 0 chr3 135124767 135124790 -24474993 + (CACAC)n Simple_repeat Simple_repeat 3 25 0 2 1615 1129 51 58 0 chr3 135125017 135125155 -24474628 - B1_Mus1 SINE Alu -1 147 2 2 1615 233 250 44 59 chr3 135126161 135126229 -24473554 + B1F SINE Alu 80 146 -3 2 1615 1079 113 0 0 chr3 135126382 135126532 -24473251 + B2_Mm2 SINE B2 2 151 -44 2 1615 212 59 0 29 chr3 135126532 135126567 -24473216 + (TA)n Simple_repeat Simple_repeat 1 34 0 2 1615 26 50 0 0 chr3 135128098 135128138 -24471645 + AT_rich Low_complexity Low_complexity 1 40 0 2 1615 373 211 109 55 chr3 135132072 135132182 -24467601 - B1_Mm SINE Alu 0 120 5 2 1615 579 288 171 3 chr3 135132693 135132979 -24466804 - RCHARR1 DNA MER1_type -240 734 401 2 1615 381 295 0 11 chr3 135133426 135133515 -24466268 + PB1D10 SINE Alu 12 99 -18 2 1615 321 318 54 18 chr3 135133515 135133538 -24466245 + ID_B1 SINE B4 93 208 -16 2 1615 195 42 0 0 chr3 135134148 135134172 -24465611 + (GAAAA)n Simple_repeat Simple_repeat 3 26 0 2 1615 318 221 144 21 chr3 135134172 135134269 -24465514 + L1MB5 LINE L1 5363 5471 -707 2 1615 417 244 166 17 chr3 135134269 135134444 -24465339 + B3 SINE B2 1 201 -15 2 1615 1098 83 14 20 chr3 135134447 135134595 -24465188 - B1_Mus1 SINE Alu 0 148 2 2 1615 504 0 0 0 chr3 135134598 135134654 -24465129 + (TTTA)n Simple_repeat Simple_repeat 2 57 0 2 1615 296 306 122 23 chr3 135134654 135134762 -24465021 + L1MB5 LINE L1 5472 5589 -591 2 1615 375 283 170 18 chr3 135135008 135135231 -24464552 + L1MB5 LINE L1 5917 6173 -1 2 1616 898 219 85 20 chr3 135135328 135135528 -24464255 - B3 SINE B2 -2 214 2 2 1616 632 229 258 43 chr3 135135736 135135969 -24463814 + B4 SINE B4 2 284 -8 2 1616 552 169 2 17 chr3 135136279 135136396 -24463387 - B1_Mur2 SINE Alu -2 147 34 2 1616 1264 87 0 0 chr3 135136521 135136693 -24463090 + B2_Mm2 SINE B2 2 173 -22 2 1616 195 69 0 0 chr3 135137125 135137154 -24462629 + (TTTTG)n Simple_repeat Simple_repeat 3 31 0 2 1616 250 270 158 38 chr3 135137194 135137352 -24462431 + LTR41B LTR ERVL 576 752 -6 2 1616 21 57 0 0 chr3 135137409 135137444 -24462339 + AT_rich Low_complexity Low_complexity 1 35 0 2 1616 875 250 45 157 chr3 135137766 135138227 -24461556 + RMER20B LTR ERVK 207 618 -9 2 1616 249 385 10 0 chr3 135138194 135138290 -24461493 + RMER20B LTR ERVK 504 600 -27 2 1616 728 216 97 5 chr3 135138404 135138580 -24461203 + B3 SINE B2 2 194 -22 2 1616 825 11 0 0 chr3 135138580 135138674 -24461109 + (TG)n Simple_repeat Simple_repeat 2 95 0 2 1616 728 216 97 5 chr3 135138674 135138692 -24461091 + B3 SINE B2 195 213 -3 2 1616 21 0 0 0 chr3 135138819 135138840 -24460943 + AT_rich Low_complexity Low_complexity 1 21 0 2 1616 531 288 137 25 chr3 135139183 135139801 -24459982 + L1MC4a LINE L1 7180 7983 -12 2 1616 231 278 110 9 chr3 135140096 135140205 -24459578 - L1MCa LINE L1 -4849 1659 1540 2 1616 1176 155 98 5 chr3 135140293 135140507 -24459276 + ORR1A2 LTR MaLR 1 234 -93 2 1616 196 93 70 0 chr3 135140520 135140563 -24459220 + (TTTG)n Simple_repeat Simple_repeat 1 46 0 2 1616 253 133 41 853 chr3 135140569 135140593 -24459190 + ORR1A2 LTR MaLR 277 306 -40 2 1616 1190 82 0 7 chr3 135140593 135140741 -24459042 - B1_Mm SINE Alu 0 147 1 2 1616 253 119 0 23 chr3 135140741 135140773 -24459010 + ORR1A2 LTR MaLR 287 318 -8 2 1616 1570 35 40 0 chr3 135140808 135141010 -24458773 + MTB LTR MaLR 187 396 -4 2 1616 1381 108 5 0 chr3 135141011 135141196 -24458587 + B2_Mm1t SINE B2 3 188 -5 2 1616 422 265 37 0 chr3 135141259 135141395 -24458388 - L1MCa LINE L1 -5115 1393 1253 2 1616 285 224 40 30 chr3 135141488 135141589 -24458194 - L1MCa LINE L1 -5311 1197 1096 2 1616 444 37 0 0 chr3 135141645 135141699 -24458084 + (TG)n Simple_repeat Simple_repeat 2 55 0 2 1616 571 285 16 0 chr3 135141701 135141824 -24457959 - RSINE1 SINE B4 -25 140 16 2 1616 375 267 75 15 chr3 135141824 135141957 -24457826 + MTEb LTR MaLR 26 166 -213 2 1616 294 125 0 0 chr3 135141957 135142005 -24457778 + (ATGGTG)n Simple_repeat Simple_repeat 5 52 0 2 1616 643 250 37 88 chr3 135142068 135142283 -24457500 - B3 SINE B2 -5 211 8 2 1616 998 41 0 0 chr3 135142302 135142425 -24457358 - B1_Mus2 SINE Alu 0 147 25 2 1616 273 274 172 71 chr3 135142408 135142577 -24457206 + MTEb LTR MaLR 184 369 -10 2 1616 46 45 0 0 chr3 135142629 135142696 -24457087 + AT_rich Low_complexity Low_complexity 1 67 0 2 1616 1141 181 23 41 chr3 135142703 135142922 -24456861 - B3 SINE B2 0 216 2 2 1616 472 231 7 71 chr3 135143065 135143205 -24456578 - ID_B1 SINE B4 0 224 94 2 1616 778 182 28 42 chr3 135143244 135143387 -24456396 - B1_Mur2 SINE Alu -8 141 1 2 1616 1065 279 91 6 chr3 135143465 135143797 -24455986 + MTE2b LTR MaLR 17 376 -3 2 1616 283 346 92 38 chr3 135143933 135144173 -24455610 - LTR83 LTR ERVL -333 447 195 3 1616 336 143 0 0 chr3 135144258 135144314 -24455469 + (TTCC)n Simple_repeat Simple_repeat 4 59 0 3 1616 972 145 21 0 chr3 135144314 135144459 -24455324 - B1_Mur3 SINE Alu 0 149 2 3 1616 1607 212 44 25 chr3 135144498 135144897 -24454886 - MTD LTR MaLR -22 397 6 3 1616 207 69 0 0 chr3 135145365 135145394 -24454389 + (TCTA)n Simple_repeat Simple_repeat 2 30 0 3 1616 396 0 0 0 chr3 135145394 135145437 -24454346 + (TG)n Simple_repeat Simple_repeat 1 44 0 3 1616 515 16 16 0 chr3 135145437 135145500 -24454283 + (GA)n Simple_repeat Simple_repeat 1 65 0 3 1616 5817 64 1 1 chr3 135145532 135146222 -24453561 - L1_Mus1 LINE L1 0 6567 5878 3 1616 23 54 0 0 chr3 135146358 135146395 -24453388 + AT_rich Low_complexity Low_complexity 1 37 0 3 1616 630 289 50 6 chr3 135146399 135146580 -24453203 - B3 SINE B2 -3 213 25 3 1616 248 0 31 0 chr3 135146973 135147005 -24452778 + (CAAA)n Simple_repeat Simple_repeat 3 35 0 3 1616 314 223 0 113 chr3 135147043 135147060 -24452723 - PB1D10 SINE Alu -2 115 22 3 1616 396 270 0 0 chr3 135147060 135147149 -24452634 - ID_B1 SINE B4 -33 191 103 3 1616 180 0 0 0 chr3 135147375 135147395 -24452388 + (TA)n Simple_repeat Simple_repeat 2 21 0 3 1616 391 265 214 0 chr3 135147424 135147541 -24452242 + RSINE1 SINE B4 2 143 -22 3 1616 1266 47 0 7 chr3 135147665 135147814 -24451969 - B1_Mus1 SINE Alu 0 148 1 3 1616 1055 109 0 7 chr3 135147837 135147984 -24451799 - B1_Mus2 SINE Alu 0 147 2 3 1616 353 58 19 0 chr3 135149266 135149318 -24450465 + (TG)n Simple_repeat Simple_repeat 1 53 0 3 1616 288 0 0 0 chr3 135149318 135149349 -24450434 + (GA)n Simple_repeat Simple_repeat 1 32 0 3 1616 726 214 7 35 chr3 135149738 135149883 -24449900 - ID_B1 SINE B4 0 224 84 3 1616 432 0 0 0 chr3 135149912 135149960 -24449823 + (TG)n Simple_repeat Simple_repeat 1 48 0 3 1616 364 305 69 21 chr3 135149960 135150104 -24449679 - Lx7 LINE L1 -1953 5743 5593 3 1616 244 281 256 0 chr3 135150195 135150210 -24449573 - B4A SINE B4 -46 246 95 3 1616 504 168 94 47 chr3 135150210 135150316 -24449467 - PB1D9 SINE Alu 0 120 10 3 1616 396 0 0 0 chr3 135150390 135150434 -24449349 + (TG)n Simple_repeat Simple_repeat 1 44 0 3 1616 409 255 331 0 chr3 135150436 135150633 -24449150 - B4A SINE B4 -26 266 5 3 1616 1070 203 161 10 chr3 135150668 135150974 -24448809 - RMER16 LTR ERVK 0 533 5 3 1616 230 280 15 113 chr3 135151050 135151183 -24448600 - RLTR25B LTR ERVK -473 555 436 3 1616 748 160 8 0 chr3 135151072 135151197 -24448586 - B1_Mur4 SINE Alu -2 148 23 3 1616 671 128 17 0 chr3 135151325 135151442 -24448341 + (TTCC)n Simple_repeat Simple_repeat 3 121 0 3 1616 413 313 12 159 chr3 135151445 135151625 -24448158 - ID_B1 SINE B4 -10 214 66 3 1616 738 34 0 0 chr3 135151625 135151714 -24448069 + (TC)n Simple_repeat Simple_repeat 1 89 0 3 1616 413 313 12 159 chr3 135151714 135151784 -24447999 - ID SINE ID -159 65 1 3 1616 183 204 0 0 chr3 135151784 135151828 -24447955 + (CA)n Simple_repeat Simple_repeat 1 44 0 3 1616 370 296 35 14 chr3 135152166 135152310 -24447473 + GA-rich Low_complexity Low_complexity 2 148 0 3 1616 270 73 0 0 chr3 135152500 135152541 -24447242 + (TG)n Simple_repeat Simple_repeat 2 42 0 3 1616 375 23 0 0 chr3 135152541 135152584 -24447199 + (TA)n Simple_repeat Simple_repeat 1 44 0 3 1616 180 0 0 0 chr3 135152584 135152603 -24447180 + (GA)n Simple_repeat Simple_repeat 2 21 0 3 1616 205 327 113 19 chr3 135152985 135153091 -24446692 - L2a LINE L2 -38 3388 3273 3 1616 2072 172 73 3 chr3 135153446 135153814 -24445969 + ORR1B1 LTR MaLR 1 394 0 3 1616 201 39 0 0 chr3 135153981 135154007 -24445776 + (TG)n Simple_repeat Simple_repeat 2 27 0 3 1616 497 333 45 6 chr3 135154012 135154169 -24445614 - RSINE1 SINE B4 0 165 3 3 1616 246 291 28 55 chr3 135154171 135154280 -24445503 - PB1 SINE Alu -21 106 1 3 1616 289 267 132 11 chr3 135154572 135154663 -24445120 - RSINE1 SINE B4 -61 104 3 3 1616 1957 151 33 7 chr3 135155104 135155404 -24444379 - RLTR10E LTR ERVK -3 308 1 3 1616 20826 86 5 16 chr3 135155404 135157309 -24442474 - MMERVK10C-int LTR ERVK 0 7680 5773 3 1616 1243 56 0 0 chr3 135157309 135157451 -24442332 + B1_Mus2 SINE Alu 1 142 -5 3 1616 20826 72 1 15 chr3 135157451 135158615 -24441168 - MMERVK10C-int LTR ERVK -1809 5772 4623 3 1616 878 68 36 50 chr3 135159283 135159423 -24440360 - MMERVK10C-int LTR ERVK -2911 4670 4533 3 1616 482 217 12 17 chr3 135159440 135159575 -24440208 - MMETn-int LTR ERVK -2369 2475 2367 3 1616 1784 153 28 3 chr3 135159576 135159864 -24439919 - MMERVK10C-int LTR ERVK -3139 4267 3973 3 1616 463 123 0 14 chr3 135159835 135159909 -24439874 - MMETn-int LTR ERVK -2538 2306 2234 3 1616 954 17 0 8 chr3 135159922 135160041 -24439742 - B1_Mm SINE Alu -9 138 21 3 1616 1557 132 79 4 chr3 135160051 135160318 -24439465 - MMERVK10C-int LTR ERVK -3551 3855 3569 3 1616 1191 246 61 24 chr3 135160344 135160639 -24439144 - MMERVK10C-int LTR ERVK -4653 2753 2448 3 1616 402 165 78 148 chr3 135160639 135160732 -24439051 - RLTR19-int LTR ERVK -5081 1056 962 3 1616 1762 26 0 20 chr3 135160732 135160929 -24438854 - B2_Mm1t SINE B2 0 193 1 3 1616 402 165 78 148 chr3 135160929 135160963 -24438820 - RLTR19-int LTR ERVK -5176 961 938 3 1616 325 259 41 41 chr3 135160968 135161089 -24438694 - RLTR19-int LTR ERVK -4587 819 699 3 1616 1070 119 6 25 chr3 135161109 135161272 -24438511 - B3A SINE B2 -38 160 1 3 1616 402 115 0 0 chr3 135161508 135161569 -24438214 + (TG)n Simple_repeat Simple_repeat 1 61 0 3 1616 477 258 89 0 chr3 135161658 135161782 -24438001 - B1F SINE Alu -14 135 1 3 1616 180 0 0 0 chr3 135161809 135161829 -24437954 + (CA)n Simple_repeat Simple_repeat 1 20 0 3 1616 426 243 105 19 chr3 135161832 135161937 -24437846 - B1F SINE Alu -18 131 18 3 1616 1472 68 10 40 chr3 135162575 135162774 -24437009 - B2_Mm2 SINE B2 -1 194 2 3 1616 263 222 12 0 chr3 135162859 135162940 -24436843 + (TA)n Simple_repeat Simple_repeat 1 82 0 3 1616 468 77 0 0 chr3 135163135 135163200 -24436583 + (TG)n Simple_repeat Simple_repeat 2 66 0 3 1616 599 232 26 19 chr3 135163203 135163357 -24436426 - RSINE1 SINE B4 -10 155 1 3 1616 621 0 0 0 chr3 135163426 135163495 -24436288 + (CA)n Simple_repeat Simple_repeat 2 70 0 3 1616 556 274 117 24 chr3 135163641 135163889 -24435894 - L1MA4 LINE L1 -1553 5920 5651 3 1616 289 207 12 12 chr3 135164096 135164179 -24435604 + GA-rich Low_complexity Low_complexity 2 84 0 3 1616 481 272 71 29 chr3 135164193 135164333 -24435450 - RSINE1 SINE B4 -12 153 8 3 1616 260 262 137 17 chr3 135164333 135164586 -24435197 - L1MA4 LINE L1 -467 5380 5153 3 1616 401 280 44 98 chr3 135164650 135164982 -24434801 - MTEa LTR MaLR -8 351 55 3 1616 185 0 40 0 chr3 135165474 135165499 -24434284 + (TTG)n Simple_repeat Simple_repeat 2 27 0 3 1616 650 277 7 0 chr3 135165519 135165660 -24434123 + RSINE1 SINE B4 3 144 -21 3 1616 1787 197 39 25 chr3 135166437 135166796 -24432987 - MTC LTR MaLR -8 413 50 3 1616 194 59 0 81 chr3 135166801 135166812 -24432971 + (TTTTA)n Simple_repeat Simple_repeat 4 14 0 3 1616 201 74 0 0 chr3 135166812 135166839 -24432944 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 3 1616 1209 69 0 0 chr3 135166839 135166983 -24432800 - B1_Mus1 SINE Alu -2 146 3 3 1616 194 59 0 81 chr3 135166983 135167007 -24432776 + (TTTTA)n Simple_repeat Simple_repeat 2 23 0 3 1616 1634 32 0 0 chr3 135167007 135167196 -24432587 - B2_Mm1a SINE B2 -3 190 2 3 1616 664 179 64 7 chr3 135167198 135167339 -24432444 - B1_Mur2 SINE Alu 0 149 1 3 1616 420 82 16 0 chr3 135167339 135167400 -24432383 - MTC LTR MaLR -359 62 1 3 1616 1067 221 8 24 chr3 135167423 135167669 -24432114 - MTD LTR MaLR -150 269 28 3 1616 588 225 127 0 chr3 135167666 135167808 -24431975 - B3A SINE B2 -16 182 23 3 1616 627 12 12 0 chr3 135167808 135167890 -24431893 + B1_Mur4 SINE Alu 68 150 0 3 1616 740 225 137 42 chr3 135168131 135168321 -24431462 - B3 SINE B2 -4 212 5 3 1616 233 345 12 0 chr3 135168338 135168422 -24431361 - B4A SINE B4 -207 85 1 3 1616 473 277 8 8 chr3 135168840 135168971 -24430812 + RSINE1 SINE B4 11 141 -24 3 1616 1963 200 48 34 chr3 135168978 135169476 -24430307 + RMER20A LTR ERVK 11 515 -1 3 1616 246 104 63 56 chr3 135169984 135170093 -24429690 + (CTATA)n Simple_repeat Simple_repeat 2 110 0 3 1616 1259 91 40 0 chr3 135170093 135170268 -24429515 + B2_Mm1a SINE B2 2 183 -10 3 1616 246 104 63 56 chr3 135170268 135170300 -24429483 + (CTATA)n Simple_repeat Simple_repeat 1 34 0 3 1616 291 114 0 0 chr3 135170607 135170651 -24429132 + (TG)n Simple_repeat Simple_repeat 1 44 0 3 1616 684 295 61 38 chr3 135170651 135170912 -24428871 - B4A SINE B4 -25 267 1 3 1616 1200 26 19 0 chr3 135170930 135171086 -24428697 + (TG)n Simple_repeat Simple_repeat 2 160 0 3 1616 246 333 0 0 chr3 135171691 135171748 -24428035 + ID4_ SINE ID 23 79 -4 3 1616 271 231 31 0 chr3 135171879 135171944 -24427839 + ID_B1 SINE B4 158 224 0 3 1616 279 121 83 33 chr3 135171886 135171946 -24427837 + B1F SINE Alu 87 149 0 3 1616 352 246 35 17 chr3 135172541 135172657 -24427126 - L1MB7 LINE L1 -1 6183 6066 3 1616 249 227 45 0 chr3 135172685 135172751 -24427032 + MTD LTR MaLR 3 71 -350 3 1616 192 125 0 0 chr3 135172757 135172789 -24426994 + (TTTC)n Simple_repeat Simple_repeat 1 32 0 3 1616 692 169 29 29 chr3 135172789 135172929 -24426854 - B1_Mur4 SINE Alu -1 149 10 3 1616 651 189 94 41 chr3 135172986 135173157 -24426626 + MTD LTR MaLR 235 414 -5 3 1616 279 0 0 0 chr3 135175086 135175117 -24424666 + (CA)n Simple_repeat Simple_repeat 1 31 0 3 1616 288 309 155 0 chr3 135175139 135175236 -24424547 - B1F SINE Alu -29 120 9 3 1616 24 0 0 0 chr3 135175236 135175260 -24424523 + AT_rich Low_complexity Low_complexity 1 24 0 3 1616 704 271 18 61 chr3 135175295 135175523 -24424260 - ID_B1 SINE B4 -5 219 2 3 1616 839 164 7 15 chr3 135175628 135175764 -24424019 + B1_Mur3 SINE Alu 1 135 -14 3 1616 237 119 0 0 chr3 135175783 135175825 -24423958 + (A)n Simple_repeat Simple_repeat 1 42 0 3 1616 696 174 0 0 chr3 135176019 135176134 -24423649 - B1F2 SINE Alu -6 143 29 3 1616 23 33 0 0 chr3 135176184 135176214 -24423569 + GC_rich Low_complexity Low_complexity 1 30 0 4 1616 267 271 14 0 chr3 135177104 135177174 -24422609 - ID4 SINE ID -9 74 4 4 1616 1687 180 27 9 chr3 135177339 135177670 -24422113 - MTC LTR MaLR 0 421 85 4 1616 207 0 0 0 chr3 135177670 135177693 -24422090 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 4 1616 1102 58 7 0 chr3 135177693 135177830 -24421953 - B1_Mus1 SINE Alu -9 139 2 4 1616 918 283 114 25 chr3 135177840 135178278 -24421505 - Lx9 LINE L1 -206 7438 6962 4 1616 306 123 0 0 chr3 135179039 135179096 -24420687 + (TC)n Simple_repeat Simple_repeat 2 58 0 4 1616 379 280 82 20 chr3 135179111 135179125 -24420658 - ID_B1 SINE B4 0 224 159 4 1616 527 250 35 0 chr3 135179125 135179241 -24420542 - B1_Mur4 SINE Alu -23 127 8 4 1616 379 280 82 20 chr3 135179241 135179257 -24420526 - ID_B1 SINE B4 0 158 70 4 1616 324 0 0 0 chr3 135179424 135179460 -24420323 + (GA)n Simple_repeat Simple_repeat 2 37 0 4 1616 542 300 146 16 chr3 135179828 135180136 -24419647 - MLT1F2 LTR MaLR -172 388 41 4 1616 360 0 0 0 chr3 135180153 135180193 -24419590 + (CA)n Simple_repeat Simple_repeat 1 40 0 4 1616 350 291 22 73 chr3 135180216 135180353 -24419430 + MLT1B LTR MaLR 2 131 -259 4 1616 1396 88 5 10 chr3 135180576 135180770 -24419013 - B2_Mm1t SINE B2 0 193 1 4 1616 1120 90 0 0 chr3 135181258 135181403 -24418380 + B1_Mus1 SINE Alu 2 146 -2 4 1616 813 95 0 0 chr3 135181403 135181519 -24418264 + (GAAA)n Simple_repeat Simple_repeat 2 117 0 4 1616 637 244 155 31 chr3 135181755 135182013 -24417770 - B4A SINE B4 0 292 3 4 1616 1286 34 0 0 chr3 135182271 135182418 -24417365 + B1_Mus2 SINE Alu 1 147 0 4 1616 269 325 131 48 chr3 135183134 135183386 -24416397 - B4 SINE B4 -19 273 1 4 1616 450 225 0 0 chr3 135183405 135183494 -24416289 - B1_Mur2 SINE Alu -54 95 7 4 1616 552 269 79 21 chr3 135183527 135183567 -24416216 - B3 SINE B2 -14 202 156 4 1616 2714 79 75 21 chr3 135183567 135183953 -24415830 + MTB_Mm LTR MaLR 1 407 0 4 1616 552 269 79 21 chr3 135183953 135184102 -24415681 - B3 SINE B2 -61 155 2 4 1616 411 275 38 57 chr3 135184188 135184346 -24415437 - RSINE1 SINE B4 0 165 11 4 1616 744 105 0 39 chr3 135184468 135184597 -24415186 - B1_Mur4 SINE Alu 0 150 27 4 1616 434 218 72 144 chr3 135184597 135184669 -24415114 - ID_B1 SINE B4 0 224 50 4 1616 540 30 0 0 chr3 135184669 135184735 -24415048 + (CA)n Simple_repeat Simple_repeat 1 66 0 4 1616 434 218 72 144 chr3 135184735 135184769 -24415014 - ID SINE ID -175 49 7 4 1616 333 183 43 0 chr3 135184910 135185003 -24414780 + CT-rich Low_complexity Low_complexity 3 99 0 4 1616 414 0 0 0 chr3 135185398 135185444 -24414339 + (GA)n Simple_repeat Simple_repeat 1 46 0 4 1616 216 0 0 0 chr3 135186354 135186378 -24413405 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 4 1616 291 214 126 79 chr3 135186380 135186507 -24413276 - B1F2 SINE Alu -15 134 2 4 1616 889 228 109 0 chr3 135187087 135187289 -24412494 + ID_B1 SINE B4 1 224 0 4 1616 222 171 0 0 chr3 135187807 135187848 -24411935 + T-rich Low_complexity Low_complexity 1 41 0 4 1616 1390 82 5 20 chr3 135189866 135190064 -24409719 - B2_Mm2 SINE B2 0 195 1 4 1616 1054 70 0 0 chr3 135190215 135190358 -24409425 + B1_Mus1 SINE Alu 6 148 0 4 1616 252 77 0 0 chr3 135190358 135190397 -24409386 + (A)n Simple_repeat Simple_repeat 1 39 0 4 1616 482 227 10 0 chr3 135191280 135191377 -24408406 + PB1D10 SINE Alu 1 98 -19 4 1616 250 88 0 66 chr3 135192165 135192226 -24407557 + T-rich Low_complexity Low_complexity 6 62 0 4 1616 1242 20 7 7 chr3 135192226 135192373 -24407410 - B1_Mm SINE Alu 0 147 1 4 1616 265 329 51 28 chr3 135192892 135193143 -24406640 - MLT1B LTR MaLR 0 467 205 4 1616 364 134 2 2 chr3 135193183 135193249 -24406534 - B1F SINE Alu 0 149 52 4 1616 756 0 0 0 chr3 135193387 135193471 -24406312 + (TTTC)n Simple_repeat Simple_repeat 2 85 0 4 1616 1020 63 17 27 chr3 135193471 135193642 -24406141 - B2_Mm2 SINE B2 -42 153 1 4 1616 275 256 141 33 chr3 135193660 135193781 -24406002 - MLT1B LTR MaLR -243 147 14 4 1616 1296 79 79 0 chr3 135194051 135194229 -24405554 - B2_Mm1t SINE B2 -1 192 1 4 1616 654 243 60 22 chr3 135194407 135194592 -24405191 - B3A SINE B2 -6 192 1 4 1616 441 231 77 0 chr3 135194711 135194841 -24404942 + B4 SINE B4 1 140 -152 4 1616 327 25 0 0 chr3 135195592 135195632 -24404151 + (TC)n Simple_repeat Simple_repeat 1 40 0 4 1616 405 0 0 0 chr3 135195881 135195926 -24403857 + (CA)n Simple_repeat Simple_repeat 2 46 0 4 1616 639 220 123 10 chr3 135195953 135196160 -24403623 + ORR1D2 LTR MaLR 4 234 -136 4 1616 1127 52 0 0 chr3 135196303 135196439 -24403344 + B1_Mm SINE Alu 2 137 -10 4 1616 221 0 0 33 chr3 135196439 135196469 -24403314 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 4 1616 1170 41 14 14 chr3 135196959 135197107 -24402676 + B1_Mus1 SINE Alu 1 148 0 4 1616 240 111 0 0 chr3 135197107 135197143 -24402640 + (A)n Simple_repeat Simple_repeat 1 36 0 4 1616 559 230 0 56 chr3 135197381 135197524 -24402259 + ID_B1 SINE B4 89 223 -1 4 1616 638 132 19 9 chr3 135197595 135197702 -24402081 + PB1D9 SINE Alu 2 109 -11 4 1616 369 0 0 0 chr3 135197703 135197744 -24402039 + (CAAAA)n Simple_repeat Simple_repeat 2 42 0 4 1616 719 193 91 27 chr3 135197829 135198015 -24401768 + B3A SINE B2 1 198 0 4 1616 1316 97 16 21 chr3 135198062 135198252 -24401531 - B2_Mm2 SINE B2 -5 190 2 4 1616 966 126 157 5 chr3 135198566 135198757 -24401026 - URR1B DNA MER1_type -4 221 2 4 1616 25 31 0 0 chr3 135198838 135198870 -24400913 + AT_rich Low_complexity Low_complexity 1 32 0 4 1616 295 332 98 49 chr3 135198907 135199335 -24400448 - Charlie1 DNA MER1_type -6 2775 2327 4 1616 1342 331 89 56 chr3 135199537 135199834 -24399949 - Charlie1 DNA MER1_type -473 2308 1992 4 1616 303 104 0 0 chr3 135199834 135199882 -24399901 + (TA)n Simple_repeat Simple_repeat 1 48 0 4 1616 1342 331 89 56 chr3 135199882 135199977 -24399806 - Charlie1 DNA MER1_type -790 1991 1934 4 1616 1251 41 0 0 chr3 135199977 135200124 -24399659 - B1_Mm SINE Alu 0 147 1 4 1616 1342 331 89 56 chr3 135200124 135200407 -24399376 - Charlie1 DNA MER1_type -848 1933 1646 4 1616 797 220 97 141 chr3 135200407 135200602 -24399181 - ORR1D1 LTR MaLR 0 374 179 4 1616 1315 101 11 0 chr3 135200602 135200790 -24398993 + B2_Mm1t SINE B2 2 191 -2 4 1616 1108 76 7 0 chr3 135200794 135200939 -24398844 + B1_Mus1 SINE Alu 2 147 -1 4 1616 797 220 97 141 chr3 135200939 135201028 -24398755 - ORR1D1 LTR MaLR -196 178 115 4 1616 399 21 0 0 chr3 135201028 135201076 -24398707 + (TAGA)n Simple_repeat Simple_repeat 2 49 0 4 1616 797 220 97 141 chr3 135201076 135201176 -24398607 - ORR1D1 LTR MaLR -260 114 1 4 1616 1342 331 89 56 chr3 135201176 135201902 -24397881 - Charlie1 DNA MER1_type -1136 1645 865 4 1616 324 0 0 0 chr3 135201934 135201970 -24397813 + (TG)n Simple_repeat Simple_repeat 1 36 0 4 1616 650 264 93 108 chr3 135201990 135202249 -24397534 - B4A SINE B4 -14 278 24 4 1616 390 140 11 23 chr3 135202268 135202356 -24397427 + (TCTA)n Simple_repeat Simple_repeat 1 87 0 4 1616 392 238 39 23 chr3 135202417 135202546 -24397237 - Charlie1 DNA MER1_type -1910 871 741 4 1616 652 307 21 5 chr3 135202610 135202803 -24396980 - ID_B1 SINE B4 -26 198 3 4 1616 340 319 21 7 chr3 135202934 135203076 -24396707 - Charlie1 DNA MER1_type -2353 428 285 4 1616 508 241 0 0 chr3 135203081 135203197 -24396586 - PB1D10 SINE Alu 0 117 2 4 1616 520 242 117 0 chr3 135203223 135203351 -24396432 - B1_Mur1 SINE Alu -5 144 2 4 1616 235 252 67 67 chr3 135203257 135203376 -24396407 - MT2B LTR ERVL -338 263 145 4 1616 752 211 28 0 chr3 135203383 135203525 -24396258 + B1_Mur1 SINE Alu 3 148 -1 4 1616 328 285 100 6 chr3 135203594 135203774 -24396009 - Charlie1 DNA MER1_type -2518 263 67 4 1616 1117 192 9 18 chr3 135203816 135204033 -24395750 + B3 SINE B2 1 215 -1 4 1616 22 0 0 0 chr3 135204223 135204245 -24395538 + AT_rich Low_complexity Low_complexity 1 22 0 4 1616 216 0 0 0 chr3 135204363 135204387 -24395396 + (TG)n Simple_repeat Simple_repeat 1 24 0 4 1616 601 190 8 8 chr3 135204391 135204513 -24395270 - RSINE1 SINE B4 -34 131 10 4 1616 435 52 0 0 chr3 135204704 135204762 -24395021 + (CA)n Simple_repeat Simple_repeat 1 58 0 4 1616 201 273 0 0 chr3 135204762 135204806 -24394977 + GA-rich Low_complexity Low_complexity 1 44 0 4 1616 423 0 0 0 chr3 135204877 135204924 -24394859 + (TG)n Simple_repeat Simple_repeat 1 47 0 4 1616 840 276 40 28 chr3 135204932 135205182 -24394601 - B4A SINE B4 0 292 40 4 1616 49 66 0 0 chr3 135205832 135205923 -24393860 + AT_rich Low_complexity Low_complexity 1 91 0 4 1616 2156 161 34 3 chr3 135206033 135206420 -24393363 - MTC LTR MaLR -22 399 1 4 1616 469 266 141 50 chr3 135206420 135206660 -24393123 - B4A SINE B4 -29 263 2 4 1616 391 271 18 53 chr3 135207136 135207249 -24392534 - B4A SINE B4 -5 287 179 4 1616 366 183 0 0 chr3 135207542 135207613 -24392170 + (TTCG)n Simple_repeat Simple_repeat 2 72 0 4 1616 200 111 28 0 chr3 135208369 135208405 -24391378 + (CA)n Simple_repeat Simple_repeat 2 38 0 4 1616 562 230 122 39 chr3 135208425 135208606 -24391177 - B3 SINE B2 -18 198 3 4 1616 378 0 0 0 chr3 135208686 135208728 -24391055 + (TC)n Simple_repeat Simple_repeat 2 43 0 4 1616 4129 179 98 22 chr3 135209329 135210284 -24389499 - RLTR25B LTR ERVK 0 1028 1 4 1616 5534 38 1 13 chr3 135210616 135211288 -24388495 - L1Md_F2 LINE L1 0 6582 5919 4 1616 375 310 104 18 chr3 135211410 135211689 -24388094 + L2 LINE L2 2274 2576 -843 4 1616 672 293 30 20 chr3 135211783 135211985 -24387798 - B4A SINE B4 -86 206 3 4 1616 221 257 55 41 chr3 135212416 135212489 -24387294 - PB1D9 SINE Alu 0 120 47 4 1616 513 189 4 1 chr3 135212521 135212632 -24387151 - B1_Mur4 SINE Alu -35 114 2 4 1616 684 93 0 0 chr3 135212633 135212730 -24387053 + (TTTC)n Simple_repeat Simple_repeat 2 98 0 4 1616 5018 106 38 7 chr3 135212851 135213688 -24386095 - RMER17D LTR ERVK -2 887 25 4 1616 22 70 0 0 chr3 135213841 135213884 -24385899 + AT_rich Low_complexity Low_complexity 1 43 0 4 1616 610 73 8 68 chr3 135213884 135214001 -24385782 - L1Md_F2 LINE L1 0 6582 6473 4 1616 374 36 0 35 chr3 135214448 135214505 -24385278 + (TTTA)n Simple_repeat Simple_repeat 1 55 0 5 1616 722 97 0 0 chr3 135214514 135214617 -24385166 - B2_Mm2 SINE B2 -91 104 2 5 1616 1165 74 0 0 chr3 135214734 135214882 -24384901 - B1_Mus1 SINE Alu 0 148 1 5 1616 572 140 9 0 chr3 135214929 135215036 -24384747 + (TCTA)n Simple_repeat Simple_repeat 1 108 0 5 1616 379 294 71 8 chr3 135215050 135215177 -24384606 - RSINE1 SINE B4 -30 135 1 5 1616 330 194 0 0 chr3 135215336 135215403 -24384380 + CT-rich Low_complexity Low_complexity 3 69 0 5 1616 528 315 43 22 chr3 135215457 135215970 -24383813 - L1MB8 LINE L1 -8 6170 5607 5 1616 180 0 0 0 chr3 135215986 135216006 -24383777 + (T)n Simple_repeat Simple_repeat 1 20 0 5 1616 276 77 0 0 chr3 135216088 135216127 -24383656 + (T)n Simple_repeat Simple_repeat 1 39 0 5 1616 228 269 47 28 chr3 135216150 135216257 -24383526 - L1MB8 LINE L1 -758 5426 5318 5 1616 23 33 0 0 chr3 135216306 135216336 -24383447 + AT_rich Low_complexity Low_complexity 1 30 0 5 1616 725 173 45 0 chr3 135216336 135216469 -24383314 - URR1B DNA MER1_type -86 139 1 5 1616 2903 85 24 123 chr3 135216808 135217343 -24382440 - RLTR45 LTR ERVK 0 482 1 5 1616 487 84 0 0 chr3 135217504 135217575 -24382208 + B2_Mm2 SINE B2 1 71 -124 5 1616 239 288 41 90 chr3 135218439 135218542 -24381241 + L1M4 LINE L1 5065 5163 -983 5 1616 1591 37 0 21 chr3 135218542 135218736 -24381047 - B2_Mm1a SINE B2 -2 191 2 5 1616 239 271 23 76 chr3 135218736 135218820 -24380963 + L1M4 LINE L1 5164 5245 -901 5 1616 509 306 104 8 chr3 135220200 135220533 -24379250 - Lx2 LINE L1 -412 5750 5401 5 1616 1151 179 56 0 chr3 135220542 135220737 -24379046 + B3 SINE B2 4 209 -7 5 1616 684 187 58 0 chr3 135220778 135220917 -24378866 - B1_Mus1 SINE Alu 0 148 2 5 1616 269 103 35 0 chr3 135221111 135221169 -24378614 + (TCTG)n Simple_repeat Simple_repeat 4 63 0 5 1616 499 286 65 19 chr3 135221412 135221672 -24378111 + L1M4 LINE L1 3205 3476 -2670 5 1616 287 334 51 70 chr3 135221766 135222081 -24377702 - Lx2 LINE L1 -1734 4412 4104 5 1616 868 263 63 87 chr3 135222100 135222195 -24377588 - MTD LTR MaLR -16 403 317 5 1616 180 0 0 0 chr3 135222204 135222224 -24377559 + (TTG)n Simple_repeat Simple_repeat 2 21 0 5 1616 1148 68 0 14 chr3 135222224 135222362 -24377421 - B1_Mus2 SINE Alu -8 139 2 5 1616 1021 263 63 87 chr3 135222362 135222679 -24377104 - MTD LTR MaLR -103 316 1 5 1616 440 358 20 7 chr3 135222777 135222929 -24376854 - Tigger5 DNA MER2_type -2252 154 1 5 1616 418 309 28 98 chr3 135223037 135223252 -24376531 + L1M4 LINE L1 4520 4719 -1427 5 1616 280 189 0 0 chr3 135223275 135223328 -24376455 - L1MA7 LINE L1 -1 6290 6238 5 1616 359 296 20 0 chr3 135223341 135223439 -24376344 + MTE2b LTR MaLR 1 100 -279 5 1616 576 181 175 1 chr3 135223444 135223621 -24376162 - L1MA7 LINE L1 -196 6095 5883 5 1616 1076 213 38 0 chr3 135223622 135223833 -24375950 - MTD LTR MaLR 0 419 201 5 1616 941 196 50 11 chr3 135223942 135224123 -24375660 - MTD LTR MaLR -231 188 1 5 1616 619 269 105 65 chr3 135224123 135224288 -24375495 - L1MA7 LINE L1 -405 5886 5703 5 1616 1231 89 49 16 chr3 135224288 135224471 -24375312 + B2_Mm2 SINE B2 2 190 -5 5 1616 619 269 105 65 chr3 135224471 135224611 -24375172 - L1MA7 LINE L1 -589 5702 5569 5 1616 389 239 27 68 chr3 135224663 135224811 -24374972 + L1M4 LINE L1 4886 5027 -1119 5 1616 1182 70 0 0 chr3 135224812 135224954 -24374829 + B1_Mus1 SINE Alu 1 142 -6 5 1616 22 35 0 0 chr3 135225940 135225969 -24373814 + AT_rich Low_complexity Low_complexity 1 29 0 5 1616 309 26 0 0 chr3 135226019 135226057 -24373726 + (CAAAA)n Simple_repeat Simple_repeat 2 39 0 5 1616 663 263 142 63 chr3 135226563 135226802 -24372981 - B4A SINE B4 -15 277 20 5 1616 1222 29 0 0 chr3 135227417 135227555 -24372228 + B1_Mus2 SINE Alu 1 138 -9 5 1616 366 61 0 0 chr3 135227555 135227604 -24372179 + (CAAA)n Simple_repeat Simple_repeat 2 50 0 5 1616 185 219 24 0 chr3 135227745 135227786 -24371997 - L2b LINE L2 -23 3352 3311 5 1616 183 311 0 134 chr3 135227822 135227941 -24371842 + L2 LINE L2 89 191 -3228 5 1616 1463 241 46 29 chr3 135228310 135228661 -24371122 + ORR1E LTR MaLR 1 357 -2 5 1616 405 0 0 0 chr3 135229394 135229439 -24370344 + (TC)n Simple_repeat Simple_repeat 1 45 0 5 1616 336 333 137 6 chr3 135229779 135229954 -24369829 + MIRc SINE MIR 70 267 -1 5 1616 230 360 120 0 chr3 135230971 135231146 -24368637 - MIR SINE MIR -37 225 30 5 1616 966 281 128 10 chr3 135231611 135231923 -24367860 + ORR1D2 LTR MaLR 19 367 -3 5 1616 992 271 39 19 chr3 135232020 135232280 -24367503 + B4A SINE B4 6 270 -22 5 1616 304 301 64 11 chr3 135233966 135233986 -24365797 + PB1D10 SINE Alu 2 62 -87 5 1616 320 234 16 0 chr3 135233986 135234050 -24365733 + ID_B1 SINE B4 105 169 -55 5 1616 22 0 0 0 chr3 135234259 135234281 -24365502 + AT_rich Low_complexity Low_complexity 1 22 0 5 1616 1180 230 121 62 chr3 135234592 135235078 -24364705 + RLTR17 LTR ERVK 82 596 -96 5 1616 642 272 51 66 chr3 135235499 135235696 -24364087 + B3A SINE B2 2 195 -3 5 1616 204 40 0 0 chr3 135236060 135236085 -24363698 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 5 1616 495 0 0 0 chr3 135238010 135238065 -24361718 + (CA)n Simple_repeat Simple_repeat 2 56 0 5 1616 917 198 45 10 chr3 135238428 135238627 -24361156 + B3 SINE B2 1 206 -10 5 1616 292 212 0 108 chr3 135239001 135239075 -24360708 - B4A SINE B4 0 292 227 5 1616 1108 228 97 72 chr3 135239075 135239297 -24360486 - RMER16 LTR ERVK 0 533 312 5 1616 2222 128 24 27 chr3 135239297 135239708 -24360075 + RMER17C LTR ERVK 1 410 0 5 1616 1108 202 64 68 chr3 135239708 135239886 -24359897 - RMER16 LTR ERVK -222 311 1 5 1616 761 268 42 18 chr3 135239886 135240103 -24359680 - B4A SINE B4 -60 232 11 5 1616 981 123 3 13 chr3 135240103 135240701 -24359082 + (TCTCTG)n Simple_repeat Simple_repeat 1 591 0 5 1616 246 148 0 47 chr3 135240783 135240847 -24358936 + (TTA)n Simple_repeat Simple_repeat 2 62 0 5 1616 207 0 0 0 chr3 135241743 135241766 -24358017 + (A)n Simple_repeat Simple_repeat 1 23 0 5 1616 184 247 0 23 chr3 135242076 135242163 -24357620 + GA-rich Low_complexity Low_complexity 1 85 0 5 1616 271 268 24 12 chr3 135242185 135242268 -24357515 + GA-rich Low_complexity Low_complexity 6 89 0 5 1616 270 0 0 0 chr3 135242439 135242469 -24357314 + (TG)n Simple_repeat Simple_repeat 2 31 0 5 1616 382 284 8 39 chr3 135242469 135242597 -24357186 - RSINE1 SINE B4 -41 124 1 5 1616 778 131 115 0 chr3 135243232 135243362 -24356421 - B1_Mus1 SINE Alu -2 146 2 5 1616 225 0 0 0 chr3 135244036 135244061 -24355722 + (TG)n Simple_repeat Simple_repeat 1 25 0 5 1616 231 229 0 0 chr3 135244165 135244226 -24355557 + (CAT)n Simple_repeat Simple_repeat 2 62 0 5 1616 544 188 12 10 chr3 135244226 135244348 -24355435 - B1F1 SINE Alu -2 118 1 5 1616 794 299 165 9 chr3 135245235 135245569 -24354214 - MLT1G1 LTR MaLR -30 549 164 5 1616 27 81 0 0 chr3 135246040 135246102 -24353681 + AT_rich Low_complexity Low_complexity 1 62 0 5 1616 1061 188 29 34 chr3 135246579 135246788 -24352995 - B3 SINE B2 -4 212 5 5 1616 230 269 45 0 chr3 135247085 135247152 -24352631 - Lx8 LINE L1 -151 7322 7253 5 1616 255 31 0 0 chr3 135247205 135247237 -24352546 + (TG)n Simple_repeat Simple_repeat 2 33 0 5 1616 653 243 179 40 chr3 135248564 135248860 -24350923 + MTD LTR MaLR 18 354 -65 5 1616 225 65 0 0 chr3 135249170 135249201 -24350582 + (T)n Simple_repeat Simple_repeat 1 31 0 5 1616 469 319 30 46 chr3 135249628 135249825 -24349958 + ORR1E LTR MaLR 1 194 -165 5 1616 209 152 21 21 chr3 135250784 135250831 -24348952 + GA-rich Low_complexity Low_complexity 1 47 0 5 1616 268 252 8 8 chr3 135252648 135252772 -24347011 + GA-rich Low_complexity Low_complexity 6 129 0 5 1616 245 245 29 39 chr3 135254840 135254942 -24344841 + Lx4B LINE L1 6957 7057 -1 5 1616 523 261 42 0 chr3 135255740 135255859 -24343924 - B1F1 SINE Alu -10 139 16 5 1616 387 0 0 0 chr3 135257543 135257586 -24342197 + (CA)n Simple_repeat Simple_repeat 1 43 0 5 1616 204 40 0 0 chr3 135259176 135259201 -24340582 + (TTCA)n Simple_repeat Simple_repeat 2 26 0 5 1616 363 330 34 8 chr3 135259201 135259320 -24340463 - PB1 SINE Alu -5 122 1 5 1616 1024 235 52 25 chr3 135259725 135260057 -24339726 - RMER1A Other Other -488 578 188 5 1616 450 256 79 21 chr3 135260454 135260594 -24339189 - B1F1 SINE Alu -1 148 1 5 1616 541 329 14 0 chr3 135260663 135260809 -24338974 - B1F SINE Alu 0 149 2 5 1616 1184 135 35 10 chr3 135261181 135261383 -24338400 + RMER1A Other Other 782 988 -42 5 1616 506 71 0 0 chr3 135261383 135261453 -24338330 + B1_Mus2 SINE Alu 78 147 0 5 1616 234 0 0 0 chr3 135261453 135261479 -24338304 + (A)n Simple_repeat Simple_repeat 1 26 0 5 1616 238 122 0 0 chr3 135261479 135261520 -24338263 + RMER1A Other Other 986 1026 -4 5 1616 26 82 0 0 chr3 135261870 135261931 -24337852 + AT_rich Low_complexity Low_complexity 1 61 0 5 1616 333 185 0 0 chr3 135261965 135262030 -24337753 + CT-rich Low_complexity Low_complexity 4 68 0 5 1616 300 319 53 0 chr3 135262208 135262302 -24337481 - B4A SINE B4 -184 108 10 5 1616 24 32 0 0 chr3 135262324 135262355 -24337428 + AT_rich Low_complexity Low_complexity 1 31 0 5 1616 258 235 86 67 chr3 135262369 135262474 -24337309 + PB1D10 SINE Alu 14 121 -27 5 1616 468 195 0 0 chr3 135262490 135262644 -24337139 + GA-rich Low_complexity Low_complexity 1 154 0 5 1616 322 189 18 136 chr3 135262652 135262762 -24337021 + HAL1-3A_ME LINE L1 1968 2064 -794 5 1616 180 0 0 0 chr3 135262882 135262902 -24336881 + (CAAA)n Simple_repeat Simple_repeat 4 23 0 5 1616 4281 76 0 0 chr3 135263510 135264052 -24335731 - L1_Mus1 LINE L1 0 6567 6026 5 1617 255 354 99 22 chr3 135267244 135267426 -24332357 + MER58C DNA MER1_type 1 196 -19 5 1617 396 177 279 0 chr3 135268378 135268457 -24331326 - PB1D9 SINE Alu -7 113 13 5 1617 198 0 0 0 chr3 135268596 135268618 -24331165 + (TC)n Simple_repeat Simple_repeat 1 22 0 5 1617 539 252 239 26 chr3 135270652 135270915 -24328868 - MER44A DNA MER2_type -14 325 7 5 1617 702 215 44 15 chr3 135271588 135271725 -24328058 - B1_Mur2 SINE Alu -8 141 1 5 1617 246 267 27 0 chr3 135271778 135271853 -24327930 - L2c LINE L2 -17 3370 3294 5 1617 282 329 0 24 chr3 135274736 135274820 -24324963 + ID4 SINE ID 2 83 0 6 1617 280 322 104 0 chr3 135275025 135275140 -24324643 - RSINE1 SINE B4 -37 128 2 6 1617 304 232 48 10 chr3 135276199 135276308 -24323475 - L1_Mur2 LINE L1 -302 5822 5690 6 1617 210 71 0 0 chr3 135277307 135277335 -24322448 + (TA)n Simple_repeat Simple_repeat 2 29 0 6 1617 351 0 0 0 chr3 135277337 135277376 -24322407 + (CA)n Simple_repeat Simple_repeat 2 40 0 6 1617 299 268 43 113 chr3 135278737 135278834 -24320949 - Lx7 LINE L1 -390 5910 5827 6 1617 1361 75 10 31 chr3 135278834 135279028 -24320755 - B2_Mm2 SINE B2 -4 191 2 6 1617 320 259 46 83 chr3 135279028 135279300 -24320483 - Lx7 LINE L1 -473 5827 5567 6 1617 426 272 47 16 chr3 135279321 135279448 -24320335 - RSINE1 SINE B4 -23 142 12 6 1617 321 267 0 0 chr3 135279493 135279568 -24320215 - ID SINE ID -137 87 13 6 1617 1234 303 93 53 chr3 135279634 135280861 -24318922 - Lx7 LINE L1 -758 5416 4139 6 1617 519 60 0 0 chr3 135280895 135280962 -24318821 + (TTTTC)n Simple_repeat Simple_repeat 4 70 0 6 1617 959 291 74 12 chr3 135280965 135281368 -24318415 - L1_Mur3 LINE L1 -2245 3635 3208 6 1617 287 292 44 0 chr3 135282061 135282174 -24317609 - MER46C DNA MER2_type -52 286 169 6 1617 530 281 0 0 chr3 135282831 135282945 -24316838 + RSINE1 SINE B4 4 117 -48 6 1617 405 0 0 0 chr3 135282959 135283004 -24316779 + (CA)n Simple_repeat Simple_repeat 2 46 0 6 1617 369 0 0 0 chr3 135283004 135283044 -24316739 + (GA)n Simple_repeat Simple_repeat 2 42 0 6 1617 447 19 0 0 chr3 135283073 135283125 -24316658 + (CA)n Simple_repeat Simple_repeat 2 53 0 6 1617 263 303 164 9 chr3 135283700 135283920 -24315863 + L1MEc LINE L1 49 302 -6098 6 1617 239 333 71 20 chr3 135284176 135284430 -24315353 + L1MEc LINE L1 1309 1575 -4825 6 1617 254 286 38 9 chr3 135284453 135284559 -24315224 + L1MEc LINE L1 1648 1756 -4644 6 1617 240 348 87 0 chr3 135284700 135284792 -24314991 + MER5A DNA MER1_type 7 106 -83 6 1617 1124 165 92 0 chr3 135285310 135285516 -24314267 - URR1B DNA MER1_type 0 225 1 6 1617 240 273 171 20 chr3 135287713 135287859 -24311924 - B4A SINE B4 -41 251 84 6 1617 686 128 145 0 chr3 135287869 135287986 -24311797 - B1_Mus2 SINE Alu -12 135 2 6 1617 439 245 0 0 chr3 135288027 135288121 -24311662 - B4A SINE B4 -197 95 2 6 1617 33 43 0 0 chr3 135288133 135288180 -24311603 + AT_rich Low_complexity Low_complexity 1 47 0 6 1617 583 288 27 0 chr3 135288184 135288330 -24311453 - RSINE1 SINE B4 -5 160 11 6 1617 397 257 8 68 chr3 135289063 135289180 -24310603 + PB1D7 SINE Alu 11 120 0 6 1617 207 0 0 0 chr3 135292979 135293002 -24306781 + (T)n Simple_repeat Simple_repeat 1 23 0 6 1617 210 320 32 75 chr3 135294207 135294393 -24305390 - MIRb SINE MIR -79 189 12 6 1617 273 57 0 0 chr3 135294651 135294686 -24305097 + (GGGA)n Simple_repeat Simple_repeat 3 37 0 6 1617 184 333 47 23 chr3 135295032 135295118 -24304665 - MIRc SINE MIR -68 200 113 6 1617 456 137 38 54 chr3 135295529 135295714 -24304069 + RMER17C LTR ERVK 90 271 -139 6 1617 369 0 0 0 chr3 135295714 135295755 -24304028 + (CA)n Simple_repeat Simple_repeat 2 42 0 6 1617 572 40 13 0 chr3 135295755 135295830 -24303953 + (GAGAA)n Simple_repeat Simple_repeat 4 79 0 6 1617 190 310 105 12 chr3 135296710 135296926 -24302857 + L2a LINE L2 2996 3235 -191 6 1617 1417 123 18 5 chr3 135297610 135297830 -24301953 + URR1A DNA MER1_type 1 223 -3 6 1617 269 295 33 34 chr3 135297943 135298074 -24301709 + MIRb SINE MIR 26 159 -117 6 1617 425 282 43 43 chr3 135298981 135299144 -24300639 + B3A SINE B2 3 165 -33 6 1617 1225 54 0 0 chr3 135299327 135299474 -24300309 - B1_Mus2 SINE Alu 0 147 1 6 1617 207 0 0 0 chr3 135299988 135300011 -24299772 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 6 1617 21 0 0 0 chr3 135301225 135301246 -24298537 + GC_rich Low_complexity Low_complexity 1 21 0 6 1617 579 29 0 0 chr3 135301635 135301704 -24298079 + (TA)n Simple_repeat Simple_repeat 1 69 0 6 1617 819 228 33 38 chr3 135302525 135302735 -24297048 - B3 SINE B2 -3 213 5 6 1617 966 206 0 40 chr3 135302890 135303092 -24296691 - B3A SINE B2 -3 195 2 6 1617 316 306 132 48 chr3 135304201 135304534 -24295249 - L3 LINE CR1 -486 4003 3643 6 1617 296 309 35 128 chr3 135306020 135306161 -24293622 - B4A SINE B4 -141 151 24 6 1617 533 304 154 10 chr3 135306417 135306723 -24293060 - L2 LINE L2 -720 2699 2350 6 1617 346 296 3 99 chr3 135307320 135307469 -24292314 + B4A SINE B4 35 174 -118 6 1617 474 129 0 0 chr3 135307629 135307714 -24292069 + (GGAA)n Simple_repeat Simple_repeat 4 88 0 6 1617 624 250 0 14 chr3 135307829 135307967 -24291816 + B1_Mur1 SINE Alu 2 137 -12 6 1617 216 0 0 0 chr3 135307967 135307991 -24291792 + (CAAAA)n Simple_repeat Simple_repeat 4 27 0 6 1617 1002 161 113 5 chr3 135308023 135308217 -24291566 + B3 SINE B2 2 216 0 6 1617 353 311 89 12 chr3 135308457 135308626 -24291157 - MIR SINE MIR -65 197 16 6 1617 267 31 0 0 chr3 135310475 135310507 -24289276 + (TTTA)n Simple_repeat Simple_repeat 3 34 0 6 1617 862 319 37 22 chr3 135310867 135311274 -24288509 + MLT1C LTR MaLR 55 467 0 6 1617 183 42 0 0 chr3 135312731 135312755 -24287028 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 6 1617 372 202 35 23 chr3 135313229 135313315 -24286468 + PB1D10 SINE Alu 17 103 -14 6 1617 264 30 0 0 chr3 135313546 135313579 -24286204 + (TG)n Simple_repeat Simple_repeat 2 34 0 6 1617 246 81 0 0 chr3 135314917 135314954 -24284829 + (GA)n Simple_repeat Simple_repeat 2 38 0 6 1617 264 327 10 0 chr3 135315118 135315219 -24284564 + L1_Mur3 LINE L1 1956 2057 -3823 6 1617 431 301 34 20 chr3 135318021 135318167 -24281616 - B1F SINE Alu -1 148 1 6 1617 374 244 101 0 chr3 135318939 135319058 -24280725 - Lx3C LINE L1 -43 6933 6803 6 1617 416 218 19 47 chr3 135319303 135319409 -24280374 + PB1D9 SINE Alu 13 115 -5 6 1617 231 36 0 0 chr3 135319424 135319452 -24280331 + (CACAA)n Simple_repeat Simple_repeat 5 32 0 6 1617 367 301 0 0 chr3 135319835 135319928 -24279855 + PB1D7 SINE Alu 1 93 -27 6 1617 234 0 0 0 chr3 135320327 135320353 -24279430 + (CA)n Simple_repeat Simple_repeat 2 27 0 6 1617 597 224 40 0 chr3 135320420 135320545 -24279238 + B3 SINE B2 1 130 -86 6 1617 32 0 0 0 chr3 135320559 135320591 -24279192 + AT_rich Low_complexity Low_complexity 1 32 0 6 1617 486 75 0 0 chr3 135320837 135320904 -24278879 + (TG)n Simple_repeat Simple_repeat 2 68 0 6 1617 206 95 24 0 chr3 135321457 135321499 -24278284 + (CAAAAA)n Simple_repeat Simple_repeat 6 48 0 6 1617 22 0 0 0 chr3 135322198 135322220 -24277563 + AT_rich Low_complexity Low_complexity 1 22 0 6 1617 679 242 19 5 chr3 135322220 135322406 -24277377 - B3 SINE B2 -3 195 1 6 1617 723 176 88 0 chr3 135322861 135322997 -24276786 - B1_Mur1 SINE Alu 0 149 2 6 1617 21 57 0 0 chr3 135323196 135323231 -24276552 + AT_rich Low_complexity Low_complexity 1 35 0 6 1617 385 221 0 0 chr3 135325674 135325751 -24274032 + B3A SINE B2 3 79 -119 6 1617 748 278 49 0 chr3 135326318 135326541 -24273242 + B4A SINE B4 1 234 -58 6 1617 207 0 0 0 chr3 135326786 135326809 -24272974 + (TCG)n Simple_repeat Simple_repeat 2 24 0 6 1617 435 38 0 0 chr3 135326809 135326862 -24272921 + (TTTC)n Simple_repeat Simple_repeat 3 55 0 6 1617 1158 58 0 0 chr3 135326863 135327001 -24272782 - B1_Mus1 SINE Alu -10 138 1 6 1617 354 278 45 83 chr3 135327044 135327201 -24272582 + MLT1D LTR MaLR 4 154 -351 6 1617 266 237 281 0 chr3 135327360 135327474 -24272309 + MLT1D LTR MaLR 356 501 -4 6 1617 180 111 0 0 chr3 135327713 135327740 -24272043 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 6 1617 452 237 3 37 chr3 135327885 135328211 -24271572 + (TG)n Simple_repeat Simple_repeat 1 314 0 6 1617 362 293 46 60 chr3 135330093 135330423 -24269360 + MLT1C LTR MaLR 67 461 -6 6 1617 1208 105 35 0 chr3 135331410 135331582 -24268201 + B2_Mm1t SINE B2 2 179 -14 6 1617 433 57 321 62 chr3 135331614 135331726 -24268057 + B2_Mm2 SINE B2 47 187 -8 6 1617 680 225 104 6 chr3 135332171 135332354 -24267429 + B3 SINE B2 4 204 -12 6 1617 736 175 87 7 chr3 135332383 135332521 -24267262 + B1_Mur2 SINE Alu 1 149 0 6 1617 184 217 65 0 chr3 135332646 135332692 -24267091 + MIRm SINE MIR 70 118 -158 6 1617 858 192 199 30 chr3 135332861 135333200 -24266583 + Lx9 LINE L1 7242 7637 -7 6 1617 1855 151 38 6 chr3 135335439 135335785 -24263998 + ORR1C2 LTR MaLR 28 384 0 6 1617 851 227 19 37 chr3 135336430 135336645 -24263138 - B3 SINE B2 -3 213 3 6 1617 735 44 0 0 chr3 135337250 135337341 -24262442 + (GA)n Simple_repeat Simple_repeat 2 92 0 6 1617 240 32 0 0 chr3 135337385 135337402 -24262381 + (TG)n Simple_repeat Simple_repeat 2 18 0 6 1617 384 22 0 0 chr3 135337402 135337447 -24262336 + (GA)n Simple_repeat Simple_repeat 1 45 0 6 1617 240 32 0 0 chr3 135337447 135337460 -24262323 + (TG)n Simple_repeat Simple_repeat 1 13 0 6 1617 256 323 138 26 chr3 135337728 135337960 -24261823 + MLT1H LTR MaLR 108 365 -184 6 1617 28 0 0 0 chr3 135338272 135338300 -24261483 + AT_rich Low_complexity Low_complexity 1 28 0 6 1617 26 0 0 0 chr3 135338805 135338831 -24260952 + AT_rich Low_complexity Low_complexity 1 26 0 6 1617 542 281 12 75 chr3 135338906 135339079 -24260704 + RSINE1 SINE B4 4 165 0 6 1617 408 345 13 75 chr3 135339367 135339674 -24260109 + L1MB5 LINE L1 5852 6139 -35 6 1617 1056 103 14 0 chr3 135339684 135339829 -24259954 + B1_Mus1 SINE Alu 1 147 -1 6 1617 370 306 77 0 chr3 135340485 135340655 -24259128 + L1MEf LINE L1 1522 1704 -4538 6 1617 233 314 54 40 chr3 135341032 135341254 -24258529 + L1MEf LINE L1 2203 2427 -3719 6 1617 433 252 0 25 chr3 135341267 135341385 -24258398 - PB1D9 SINE Alu 0 120 6 6 1617 369 296 0 42 chr3 135341409 135341529 -24258254 + L1M5 LINE L1 2450 2564 -3582 7 1617 497 252 137 78 chr3 135341551 135341844 -24257939 - MLT1A0 LTR MaLR 0 365 56 7 1617 228 321 13 13 chr3 135343177 135343256 -24256527 - ID2 SINE ID -3 80 2 7 1617 510 128 0 0 chr3 135344997 135345091 -24254692 + (TC)n Simple_repeat Simple_repeat 1 94 0 7 1617 204 196 0 35 chr3 135346937 135346995 -24252788 + T-rich Low_complexity Low_complexity 6 61 0 7 1617 606 228 0 8 chr3 135347209 135347333 -24252450 + RSINE1 SINE B4 4 126 -39 7 1617 5911 63 52 0 chr3 135347554 135348320 -24251463 + L1_Mus1 LINE L1 5762 6567 0 7 1617 204 254 0 16 chr3 135349152 135349216 -24250567 + (TA)n Simple_repeat Simple_repeat 2 64 0 7 1617 189 0 0 0 chr3 135349780 135349801 -24249982 + (CA)n Simple_repeat Simple_repeat 2 22 0 7 1617 25 0 0 0 chr3 135349876 135349901 -24249882 + AT_rich Low_complexity Low_complexity 1 25 0 7 1617 234 128 0 0 chr3 135350875 135350914 -24248869 + (TCCC)n Simple_repeat Simple_repeat 2 40 0 7 1617 180 0 0 0 chr3 135354173 135354193 -24245590 + (CGGG)n Simple_repeat Simple_repeat 4 23 0 7 1617 209 169 16 33 chr3 135354197 135354258 -24245525 + (CGCGG)n Simple_repeat Simple_repeat 5 64 0 7 1617 243 0 0 0 chr3 135354306 135354333 -24245450 + (CGG)n Simple_repeat Simple_repeat 2 28 0 7 1617 24 53 0 0 chr3 135354607 135354645 -24245138 + GC_rich Low_complexity Low_complexity 1 38 0 7 1617 195 204 0 0 chr3 135355649 135355698 -24244085 + GA-rich Low_complexity Low_complexity 3 51 0 7 1617 447 35 0 0 chr3 135356355 135356412 -24243371 + (TG)n Simple_repeat Simple_repeat 2 58 0 7 1617 208 305 55 0 chr3 135356576 135356740 -24243043 + (TG)n Simple_repeat Simple_repeat 1 173 0 7 1617 478 325 30 6 chr3 135356882 135357046 -24242737 - B3A SINE B2 -29 169 2 7 1617 345 24 0 0 chr3 135357902 135357944 -24241839 + (CA)n Simple_repeat Simple_repeat 2 43 0 7 1617 23 0 0 0 chr3 135358033 135358056 -24241727 + AT_rich Low_complexity Low_complexity 1 23 0 7 1617 230 281 18 0 chr3 135359160 135359217 -24240566 + ID4_ SINE ID 23 80 -3 7 1617 578 183 133 0 chr3 135360006 135360126 -24239657 + B1_Mur1 SINE Alu 2 137 -12 7 1617 303 93 0 0 chr3 135360126 135360169 -24239614 + (CAAG)n Simple_repeat Simple_repeat 1 43 0 7 1617 251 148 32 32 chr3 135360495 135360558 -24239225 + (TTTG)n Simple_repeat Simple_repeat 2 64 0 7 1617 808 73 48 0 chr3 135360558 135360672 -24239111 - B1_Mus2 SINE Alu 0 147 28 7 1617 227 33 0 0 chr3 135360672 135360702 -24239081 + PB1D9 SINE Alu 2 31 -89 7 1617 287 275 190 31 chr3 135362883 135363078 -24236705 - L1ME1 LINE L1 -52 6127 5902 7 1617 488 304 70 20 chr3 135363720 135364063 -24235720 - L1ME1 LINE L1 -1455 4691 4332 7 1617 244 361 42 0 chr3 135364204 135364323 -24235460 - Tigger5 DNA MER2_type -2207 199 76 7 1617 294 284 27 0 chr3 135364320 135364394 -24235389 + PB1D7 SINE Alu 36 111 -9 7 1617 380 333 66 36 chr3 135364486 135364897 -24234886 - L1ME1 LINE L1 -1812 4334 3912 7 1617 811 253 143 13 chr3 135365174 135365480 -24234303 + MTEa LTR MaLR 3 349 -30 7 1617 272 214 32 43 chr3 135365488 135365581 -24234202 - L1MD LINE L1 -2724 3422 3331 7 1617 947 268 23 19 chr3 135365579 135365845 -24233938 - L1MD1 LINE L1 0 6242 5976 7 1617 565 294 116 42 chr3 135366026 135366285 -24233498 - B4 SINE B4 0 292 15 7 1617 734 245 39 0 chr3 135366308 135366516 -24233267 - L1MD1 LINE L1 -434 5808 5593 7 1617 1124 298 65 47 chr3 135366544 135367079 -24232704 - Lx8 LINE L1 -2 7471 6927 7 1617 542 289 20 51 chr3 135367099 135367296 -24232487 - Lx8 LINE L1 -608 6865 6675 7 1617 306 222 44 27 chr3 135367367 135367475 -24232308 + B4 SINE B4 78 274 -18 7 1617 405 116 0 0 chr3 135367499 135367568 -24232215 + (CA)n Simple_repeat Simple_repeat 2 70 0 7 1617 415 261 212 5 chr3 135368174 135368363 -24231420 - MLT2B4 LTR ERVL -321 235 8 7 1617 207 337 0 30 chr3 135368426 135368527 -24231256 + GA-rich Low_complexity Low_complexity 3 100 0 7 1617 198 128 0 0 chr3 135368936 135368975 -24230808 + (CA)n Simple_repeat Simple_repeat 1 39 0 7 1617 365 246 116 29 chr3 135369893 135370031 -24229752 + MER2 DNA MER2_type 74 223 -122 7 1617 456 272 185 28 chr3 135370032 135370210 -24229573 + ID_B1 SINE B4 2 207 -17 7 1617 1021 128 6 11 chr3 135370213 135370394 -24229389 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 7 1617 360 128 0 37 chr3 135370401 135370482 -24229301 + GA-rich Low_complexity Low_complexity 4 81 0 7 1617 438 189 78 43 chr3 135370721 135370837 -24228946 + ID_B1 SINE B4 105 224 0 7 1617 10717 2 0 0 chr3 135370872 135372737 -24227046 - L1Md_A LINE L1 0 6582 4718 7 1617 1470 161 63 18 chr3 135375177 135375462 -24224321 - MTC LTR MaLR -123 298 1 7 1617 930 179 6 11 chr3 135375529 135375710 -24224073 - B3 SINE B2 0 216 37 7 1617 1285 91 11 6 chr3 135375718 135375895 -24223888 + B2_Mm1t SINE B2 2 179 -14 7 1617 292 126 0 25 chr3 135375970 135376076 -24223707 + B2_Mm2 SINE B2 47 193 -2 7 1617 759 78 0 0 chr3 135376466 135376569 -24223214 + (TCCC)n Simple_repeat Simple_repeat 3 105 0 7 1617 1026 100 0 0 chr3 135376933 135377113 -24222670 + (GA)n Simple_repeat Simple_repeat 1 180 0 7 1617 1010 343 68 0 chr3 135377809 135378191 -24221592 + Lx8 LINE L1 6749 7156 -317 7 1617 689 320 42 68 chr3 135378212 135378621 -24221162 + Lx8 LINE L1 7071 7468 -5 7 1617 354 184 85 6 chr3 135378622 135378843 -24220940 + (TA)n Simple_repeat Simple_repeat 1 238 0 7 1617 312 228 37 37 chr3 135378759 135378983 -24220800 + (TATAA)n Simple_repeat Simple_repeat 1 224 0 7 1617 242 231 28 19 chr3 135379047 135379153 -24220630 + (TA)n Simple_repeat Simple_repeat 1 107 0 7 1617 7452 105 20 12 chr3 135379153 135380782 -24219001 - Lx LINE L1 -1 6653 5011 7 1617 2183 191 90 44 chr3 135381100 135381620 -24218163 + Lx5 LINE L1 6507 7050 0 7 1617 572 282 86 71 chr3 135382676 135382943 -24216840 - B4A SINE B4 0 292 22 7 1617 1243 279 15 35 chr3 135383185 135383638 -24216145 - L1MA4A LINE L1 -377 5926 5515 7 1617 494 223 55 41 chr3 135384330 135384475 -24215308 + B1F2 SINE Alu 3 149 0 7 1617 270 56 0 0 chr3 135384489 135384525 -24215258 + (CAA)n Simple_repeat Simple_repeat 1 36 0 7 1617 218 343 0 45 chr3 135384743 135384853 -24214930 + MIR SINE MIR 18 122 -140 7 1617 552 15 0 0 chr3 135385075 135385140 -24214643 + (CA)n Simple_repeat Simple_repeat 2 66 0 7 1617 4978 101 30 1 chr3 135385668 135386390 -24213393 + Lx2 LINE L1 6255 6997 0 7 1617 485 265 75 27 chr3 135386775 135386961 -24212822 + MER31B LTR ERV1 262 456 -10 7 1617 214 73 0 47 chr3 135386993 135387036 -24212747 + (GGA)n Simple_repeat Simple_repeat 1 41 0 7 1617 4741 35 28 12 chr3 135387177 135387753 -24212030 - L1Md_F3 LINE L1 0 6584 6000 7 1617 472 219 42 0 chr3 135387958 135388054 -24211729 + B1_Mur1 SINE Alu 47 146 -3 7 1617 516 332 56 20 chr3 135388367 135388564 -24211219 + Lx9 LINE L1 6358 6561 -1083 7 1617 285 98 0 0 chr3 135389586 135389627 -24210156 + (CAT)n Simple_repeat Simple_repeat 3 43 0 7 1617 573 150 0 0 chr3 135390158 135390258 -24209525 + (GGGGA)n Simple_repeat Simple_repeat 5 104 0 7 1617 1001 260 33 81 chr3 135390720 135391113 -24208670 + MTE2b LTR MaLR 2 375 -4 7 1617 377 231 38 54 chr3 135391141 135391299 -24208484 - RSINE1 SINE B4 -137 155 1 7 1617 313 302 9 19 chr3 135392506 135392614 -24207169 + CT-rich Low_complexity Low_complexity 2 108 0 7 1617 386 121 15 0 chr3 135393568 135393634 -24206149 + (TCCC)n Simple_repeat Simple_repeat 4 70 0 7 1617 248 20 60 20 chr3 135394176 135394226 -24205557 + (TAAAAA)n Simple_repeat Simple_repeat 3 54 0 7 1617 282 127 14 125 chr3 135394320 135394392 -24205391 - B1_Mus2 SINE Alu 0 147 84 7 1617 225 338 90 0 chr3 135395201 135395262 -24204521 + RSINE1 SINE B4 12 80 -85 7 1617 498 17 0 0 chr3 135395262 135395321 -24204462 + (CA)n Simple_repeat Simple_repeat 1 59 0 7 1617 225 338 90 0 chr3 135395321 135395392 -24204391 + RSINE1 SINE B4 81 155 -10 7 1617 2022 180 11 11 chr3 135395644 135396010 -24203773 + ORR1B2 LTR MaLR 2 367 0 7 1617 23 0 0 0 chr3 135396707 135396730 -24203053 + AT_rich Low_complexity Low_complexity 1 23 0 7 1618 427 343 117 44 chr3 135397819 135398090 -24201693 - L4 LINE RTE -854 1175 873 7 1618 4897 45 3 3 chr3 135398090 135398677 -24201106 - LTRIS_Mus LTR ERV1 0 587 1 7 1618 495 0 0 0 chr3 135398677 135398732 -24201051 + (TCTA)n Simple_repeat Simple_repeat 1 55 0 7 1618 427 343 117 44 chr3 135398732 135398871 -24200912 - L4 LINE RTE -1157 872 735 7 1618 394 331 8 53 chr3 135399385 135399516 -24200267 + RSINE1 SINE B4 1 125 -40 7 1618 546 54 0 0 chr3 135399659 135399733 -24200050 + (TG)n Simple_repeat Simple_repeat 1 74 0 7 1618 360 304 51 15 chr3 135400076 135400213 -24199570 - MLT1A0 LTR MaLR -7 358 217 7 1618 219 69 0 0 chr3 135400817 135400846 -24198937 + (GA)n Simple_repeat Simple_repeat 2 30 0 7 1618 233 318 58 12 chr3 135400869 135400955 -24198828 - L4 LINE RTE -1861 168 79 7 1618 270 116 0 0 chr3 135401025 135401068 -24198715 + (CCA)n Simple_repeat Simple_repeat 1 43 0 7 1618 303 28 0 0 chr3 135402046 135402082 -24197701 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 7 1618 663 164 15 23 chr3 135402082 135402213 -24197570 - B1_Mus2 SINE Alu -9 138 9 7 1618 192 77 0 0 chr3 135404001 135404027 -24195756 + (CAACC)n Simple_repeat Simple_repeat 2 27 0 7 1618 865 122 0 13 chr3 135404383 135404541 -24195242 + (TCCA)n Simple_repeat Simple_repeat 3 158 0 7 1618 381 252 26 35 chr3 135404804 135404919 -24194864 - PB1D10 SINE Alu -3 114 1 7 1618 651 153 104 8 chr3 135405106 135405231 -24194552 - B1_Mus1 SINE Alu 0 148 12 7 1618 488 16 0 16 chr3 135405249 135405311 -24194472 + (TCTA)n Simple_repeat Simple_repeat 1 61 0 7 1618 245 215 335 71 chr3 135406020 135406190 -24193593 + MLT1J LTR MaLR 165 379 -133 7 1618 513 265 61 12 chr3 135406475 135406639 -24193144 + B4A SINE B4 2 173 -119 7 1618 266 323 0 0 chr3 135406722 135406784 -24192999 + (TG)n Simple_repeat Simple_repeat 1 62 0 8 1618 222 360 14 35 chr3 135407052 135407193 -24192590 - MIR SINE MIR -113 149 12 8 1618 270 73 0 0 chr3 135407371 135407412 -24192371 + (CAAAA)n Simple_repeat Simple_repeat 3 43 0 8 1618 237 202 137 11 chr3 135407617 135407712 -24192071 - MLT1B LTR MaLR -132 258 152 8 1618 926 99 7 72 chr3 135408215 135408368 -24191415 - B1_Mur4 SINE Alu -7 143 1 8 1618 801 0 0 0 chr3 135409509 135409598 -24190185 + (TTC)n Simple_repeat Simple_repeat 3 91 0 8 1618 1506 295 81 66 chr3 135410501 135411559 -24188224 - Lx8 LINE L1 -1521 6175 5058 8 1618 432 0 0 0 chr3 135411559 135411607 -24188176 + (TG)n Simple_repeat Simple_repeat 1 48 0 8 1618 1506 291 92 78 chr3 135411607 135411849 -24187934 - Lx8 LINE L1 -790 5057 4827 8 1618 684 285 47 72 chr3 135412510 135412831 -24186952 - L1ME1 LINE L1 -33 6146 5834 8 1618 467 171 40 20 chr3 135412850 135412999 -24186784 + (TA)n Simple_repeat Simple_repeat 2 153 0 8 1618 1950 116 13 78 chr3 135413292 135413666 -24186117 + ORR1B1 LTR MaLR 41 390 -4 8 1618 776 161 0 11 chr3 135414880 135415062 -24184721 + (TG)n Simple_repeat Simple_repeat 1 180 0 8 1618 1574 231 51 123 chr3 135416991 135417545 -24182238 - RMER1B Other Other -546 520 15 8 1618 453 19 0 0 chr3 135417718 135417772 -24182011 + (TC)n Simple_repeat Simple_repeat 2 55 0 8 1618 216 0 0 0 chr3 135417772 135417795 -24181988 + (TG)n Simple_repeat Simple_repeat 1 24 0 8 1618 306 0 0 0 chr3 135417795 135417828 -24181955 + (GA)n Simple_repeat Simple_repeat 1 34 0 8 1618 397 342 92 32 chr3 135418363 135418693 -24181090 + MLT2D LTR ERVL 1 413 -1 8 1618 232 292 31 0 chr3 135419016 135419081 -24180702 - Lx8 LINE L1 -360 7113 7047 8 1618 301 123 70 0 chr3 135419515 135419572 -24180211 - Lx9 LINE L1 -1 7643 7583 8 1618 453 36 0 0 chr3 135419574 135419629 -24180154 + (CA)n Simple_repeat Simple_repeat 2 56 0 8 1618 1214 288 63 30 chr3 135420332 135420826 -24178957 + RMER5 LTR ERV1 1 510 -24 8 1618 428 255 39 58 chr3 135421130 135421284 -24178499 + RLTR14 LTR ERV1 224 374 -8 8 1618 225 65 0 0 chr3 135421874 135421905 -24177878 + (TTTTTG)n Simple_repeat Simple_repeat 2 32 0 8 1618 1098 68 7 14 chr3 135421911 135422059 -24177724 - B1_Mus2 SINE Alu 0 147 1 8 1618 247 321 202 6 chr3 135422159 135422322 -24177461 + Zaphod DNA Tip100 258 452 -3579 8 1618 931 65 8 0 chr3 135422594 135422717 -24177066 - Lx4A LINE L1 -432 6626 6503 8 1618 1007 108 31 6 chr3 135422716 135422875 -24176908 - Lx4A LINE L1 -1182 5876 5714 8 1618 1066 101 82 6 chr3 135422874 135423044 -24176739 - Lx4A LINE L1 -562 5315 5133 8 1618 2657 161 7 5 chr3 135423044 135423486 -24176297 + Lx4A LINE L1 6613 7055 -3 8 1618 27 0 0 0 chr3 135423488 135423515 -24176268 + AT_rich Low_complexity Low_complexity 1 27 0 8 1618 8180 72 6 8 chr3 135423549 135425299 -24174484 + L1VL2 LINE L1 285 2029 -1586 8 1618 1624 264 24 116 chr3 135425431 135426266 -24173517 - L1_Rod LINE L1 -1289 4558 3801 8 1618 264 339 109 32 chr3 135426398 135426681 -24173102 + Zaphod DNA Tip100 3726 4030 -1 8 1618 2993 226 34 14 chr3 135426748 135426863 -24172920 - RMER1B Other Other -3 1063 946 8 1618 489 17 0 0 chr3 135426863 135426921 -24172862 + (CA)n Simple_repeat Simple_repeat 1 58 0 8 1618 3516 133 19 4 chr3 135426921 135427455 -24172328 - RMER1A Other Other -121 945 339 8 1618 419 277 21 42 chr3 135427620 135427763 -24172020 - B1F1 SINE Alu 0 149 10 8 1618 28 48 0 0 chr3 135428156 135428198 -24171585 + AT_rich Low_complexity Low_complexity 1 42 0 8 1618 333 322 118 20 chr3 135428324 135428673 -24171110 - L1ME2z LINE L1 -21 6423 6041 8 1618 649 277 67 59 chr3 135428837 135428878 -24170905 - L1ME2z LINE L1 -453 5991 5955 8 1618 4660 130 42 44 chr3 135428878 135429769 -24170014 - RMER17D LTR ERVK 0 889 1 8 1618 649 277 67 59 chr3 135429769 135430115 -24169668 - L1ME2z LINE L1 -490 5954 5601 8 1618 456 275 27 27 chr3 135430691 135430837 -24168946 + B1F SINE Alu 4 149 0 8 1618 26 30 0 0 chr3 135430837 135430870 -24168913 + AT_rich Low_complexity Low_complexity 1 33 0 8 1618 509 0 16 0 chr3 135431257 135431318 -24168465 + (TCTA)n Simple_repeat Simple_repeat 4 65 0 8 1618 528 68 0 0 chr3 135431340 135431413 -24168370 + (CA)n Simple_repeat Simple_repeat 2 74 0 8 1618 918 105 95 45 chr3 135431445 135431624 -24168159 + B2_Mm2 SINE B2 2 189 -6 8 1618 1947 105 28 19 chr3 135432516 135432835 -24166948 - RLTRETN_Mm LTR ERVK 0 322 1 8 1618 40633 21 10 5 chr3 135432835 135437801 -24161982 - MMETn-int LTR ERVK 0 4844 1 8 1618 1959 102 28 19 chr3 135437801 135438120 -24161663 - RLTRETN_Mm LTR ERVK 0 322 1 8 1618 259 304 12 0 chr3 135438136 135438232 -24161551 - ID4 SINE ID -50 102 6 8 1618 253 311 66 36 chr3 135439482 135439649 -24160134 + MER5C1 DNA MER1_type 11 182 -81 8 1618 281 342 123 12 chr3 135439769 135439932 -24159851 + Lx8 LINE L1 7041 7221 -252 8 1618 261 287 88 14 chr3 135440481 135440702 -24159081 + L1MA5 LINE L1 6039 6271 -29 8 1618 353 196 87 0 chr3 135441257 135441349 -24158434 + MYSERV16_I-int LTR ERVK 821 920 -1406 8 1618 236 188 105 86 chr3 135441357 135441462 -24158321 + RMER4A LTR ERVK 323 429 -37 8 1618 5993 160 76 12 chr3 135441462 135442674 -24157109 + MYSERV16_I-int LTR ERVK 1037 2326 0 8 1618 2829 126 2 13 chr3 135442674 135443124 -24156659 + BGLII_A LTR ERVK 1 445 0 8 1618 295 331 65 14 chr3 135443553 135443691 -24156092 + B1F2 SINE Alu 5 149 0 8 1618 8394 35 8 2 chr3 135443792 135444835 -24154948 - L1Md_F2 LINE L1 -2 6580 5532 8 1618 23 33 0 0 chr3 135444924 135444954 -24154829 + AT_rich Low_complexity Low_complexity 1 30 0 8 1618 3135 72 12 7 chr3 135445096 135445515 -24154268 - BGLII LTR ERVK 0 421 1 8 1618 198 0 0 0 chr3 135445651 135445673 -24154110 + (TG)n Simple_repeat Simple_repeat 2 23 0 8 1618 28 0 0 0 chr3 135446236 135446264 -24153519 + AT_rich Low_complexity Low_complexity 1 28 0 8 1618 1993 241 13 28 chr3 135448775 135449244 -24150539 + Lx9 LINE L1 706 1167 -6441 8 1618 1567 243 86 34 chr3 135449259 135449457 -24150326 + Lx9 LINE L1 2694 2886 -2961 8 1618 365 0 22 0 chr3 135449457 135449502 -24150281 + (GAAA)n Simple_repeat Simple_repeat 2 47 0 8 1618 1567 243 86 34 chr3 135449502 135449836 -24149947 + Lx9 LINE L1 2887 3253 -2594 8 1618 8487 36 1 5 chr3 135449837 135450990 -24148793 - L1Md_F2 LINE L1 0 6582 5435 8 1618 2913 221 62 38 chr3 135451040 135451496 -24148287 + Lx9 LINE L1 4786 5370 -477 8 1618 1362 42 0 0 chr3 135451496 135451662 -24148121 - L1_Mus2 LINE L1 0 6566 6401 8 1618 5825 243 82 19 chr3 135451662 135453507 -24146276 + Lx9 LINE L1 5371 7521 -123 8 1618 230 81 27 0 chr3 135453507 135453544 -24146239 + (CA)n Simple_repeat Simple_repeat 2 39 0 8 1618 5825 193 102 9 chr3 135453544 135453664 -24146119 + Lx9 LINE L1 7522 7637 -7 8 1618 340 263 67 49 chr3 135453680 135453844 -24145939 + MLT1F LTR MaLR 261 427 -121 8 1618 337 266 38 0 chr3 135454153 135454232 -24145551 - PB1D10 SINE Alu -34 83 2 8 1618 248 295 75 107 chr3 135454239 135454520 -24145263 - L1MC2 LINE L1 -180 6164 5893 8 1618 278 205 0 16 chr3 135454538 135454667 -24145116 + (TCTG)n Simple_repeat Simple_repeat 4 130 0 8 1618 788 228 19 0 chr3 135454670 135454832 -24144951 - RSINE1 SINE B4 0 165 1 8 1618 465 244 171 23 chr3 135454832 135455008 -24144775 - L1MC2 LINE L1 -438 5906 5705 8 1618 527 173 9 0 chr3 135455193 135455303 -24144480 + (TCTA)n Simple_repeat Simple_repeat 2 112 0 8 1618 273 202 29 39 chr3 135455314 135455417 -24144366 - L1ME4a LINE L1 -157 5967 5866 8 1618 264 301 72 16 chr3 135455529 135455654 -24144129 + L2a LINE L2 3293 3424 -2 8 1618 926 89 75 12 chr3 135456557 135456717 -24143066 + L1Md_F2 LINE L1 6413 6582 0 8 1618 284 229 59 24 chr3 135457507 135457592 -24142191 + B3A SINE B2 3 90 -108 8 1618 513 0 0 0 chr3 135457637 135457694 -24142089 + (GA)n Simple_repeat Simple_repeat 1 57 0 8 1618 391 307 36 32 chr3 135458065 135458284 -24141499 - MLT1C LTR MaLR -142 325 106 8 1618 1636 207 11 52 chr3 135458659 135459041 -24140742 + ORR1D1 LTR MaLR 9 374 0 8 1618 421 324 52 0 chr3 135459067 135459203 -24140580 + ID_B1 SINE B4 2 144 -80 8 1618 325 313 17 17 chr3 135459417 135459534 -24140249 - PB1D9 SINE Alu -1 119 3 8 1618 369 0 0 0 chr3 135459569 135459610 -24140173 + (TG)n Simple_repeat Simple_repeat 2 42 0 8 1618 2010 193 36 24 chr3 135459695 135460109 -24139674 - MTD LTR MaLR 0 419 1 8 1618 1805 210 70 35 chr3 135460324 135460732 -24139051 + RLTR20C LTR ERVK 20 442 -92 8 1618 384 22 0 0 chr3 135460732 135460777 -24139006 + (TG)n Simple_repeat Simple_repeat 2 46 0 8 1618 1805 210 70 35 chr3 135460777 135460857 -24138926 + RLTR20C LTR ERVK 443 524 -10 8 1618 369 220 66 25 chr3 135460975 135461096 -24138687 + BC1_Mm scRNA scRNA 2 127 -25 8 1618 342 0 0 0 chr3 135461153 135461191 -24138592 + (CA)n Simple_repeat Simple_repeat 2 39 0 8 1618 207 175 0 0 chr3 135461193 135461250 -24138533 + GA-rich Low_complexity Low_complexity 2 58 0 8 1618 1056 145 5 123 chr3 135462429 135462649 -24137134 + B2_Mm2 SINE B2 2 195 0 8 1618 8372 29 3 2 chr3 135463071 135464506 -24135277 - L1Md_F2 LINE L1 -2 6580 5146 8 1618 9181 11 0 3 chr3 135464514 135465994 -24133789 - L1Md_T LINE L1 0 6582 5111 8 1618 3565 249 79 94 chr3 135466768 135468315 -24131468 + Lx9 LINE L1 6121 7643 -1 8 1618 29317 104 37 1 chr3 135468497 135474253 -24125530 - L1_Mus1 LINE L1 0 6567 591 8 1618 259 135 19 0 chr3 135475629 135475671 -24124112 - MT2A LTR ERVL 0 475 433 8 1618 342 0 0 0 chr3 135475671 135475709 -24124074 + (TC)n Simple_repeat Simple_repeat 1 38 0 8 1618 194 134 60 0 chr3 135475725 135475792 -24123991 + (TA)n Simple_repeat Simple_repeat 1 71 0 8 1618 1194 212 162 96 chr3 135475801 135476239 -24123544 - MT2A LTR ERVL -65 468 2 8 1618 1157 201 183 25 chr3 135476673 135476990 -24122793 - ORR1B2 LTR MaLR 0 367 1 8 1618 1660 224 164 41 chr3 135477222 135477836 -24121947 - RMER1C Other Other -11 1331 642 8 1618 314 298 8 31 chr3 135478163 135478291 -24121492 + (TATG)n Simple_repeat Simple_repeat 4 128 0 8 1618 183 42 0 0 chr3 135478360 135478384 -24121399 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 8 1618 731 212 15 0 chr3 135478384 135478521 -24121262 - B1_Mur4 SINE Alu -11 139 1 8 1618 753 279 45 5 chr3 135478524 135478744 -24121039 - B4A SINE B4 -62 230 2 8 1618 2653 84 139 7 chr3 135479012 135479421 -24120362 - Lx LINE L1 -1 6653 6191 8 1618 328 175 48 0 chr3 135480318 135480381 -24119402 + B1F2 SINE Alu 28 93 -56 8 1618 531 0 0 0 chr3 135480400 135480459 -24119324 + (TC)n Simple_repeat Simple_repeat 2 60 0 8 1618 372 22 0 0 chr3 135480459 135480503 -24119280 + (TG)n Simple_repeat Simple_repeat 2 46 0 8 1618 359 289 193 24 chr3 135481769 135482194 -24117589 + RMER5 LTR ERV1 20 516 -18 8 1618 313 219 0 59 chr3 135482710 135482778 -24117005 - tRNA-Ala-GCY_ tRNA tRNA -8 67 4 9 1618 196 299 33 33 chr3 135483853 135483943 -24115840 + MIR3 SINE MIR 97 186 -22 9 1618 223 311 37 46 chr3 135484124 135484232 -24115551 - MIRc SINE MIR -50 218 112 9 1618 449 204 23 0 chr3 135484381 135484469 -24115314 - ID_B1 SINE B4 -52 172 83 9 1618 880 126 228 5 chr3 135485342 135485465 -24114318 + URR1B DNA MER1_type 1 156 -69 9 1618 261 0 0 0 chr3 135485465 135485494 -24114289 + (TG)n Simple_repeat Simple_repeat 1 29 0 9 1618 880 126 228 5 chr3 135485494 135485554 -24114229 + URR1B DNA MER1_type 157 224 -1 9 1618 279 0 0 0 chr3 135485568 135485599 -24114184 + (T)n Simple_repeat Simple_repeat 1 31 0 9 1618 1117 29 58 0 chr3 135485599 135485737 -24114046 - B1_Mm SINE Alu 0 147 2 9 1618 945 232 56 14 chr3 135485864 135486078 -24113705 + ID_B1 SINE B4 2 224 0 9 1618 1073 144 69 14 chr3 135486935 135487153 -24112630 - Lx2 LINE L1 0 6997 6768 9 1618 441 0 0 0 chr3 135487742 135487791 -24111992 + (CA)n Simple_repeat Simple_repeat 1 49 0 9 1618 597 28 0 0 chr3 135487800 135487871 -24111912 + (GA)n Simple_repeat Simple_repeat 1 71 0 9 1618 626 47 12 0 chr3 135488630 135488716 -24111067 + (GA)n Simple_repeat Simple_repeat 2 88 0 9 1618 287 235 87 58 chr3 135494068 135494172 -24105611 - PB1D10 SINE Alu 0 117 11 9 1618 207 311 110 19 chr3 135495352 135495506 -24104277 - MIR SINE MIR -32 230 63 9 1618 445 323 61 18 chr3 135495705 135495869 -24103914 - B4 SINE B4 0 292 122 9 1618 219 218 0 0 chr3 135495870 135495925 -24103858 + CT-rich Low_complexity Low_complexity 3 57 0 9 1618 429 309 20 26 chr3 135496060 135496213 -24103570 + RSINE1 SINE B4 3 154 -11 9 1618 212 356 21 57 chr3 135498123 135498263 -24101520 + MIR SINE MIR 1 135 -127 9 1618 188 328 0 0 chr3 135499467 135499525 -24100258 - MIR SINE MIR 0 262 205 9 1618 1748 141 58 30 chr3 135499667 135499997 -24099786 + MTC LTR MaLR 1 339 -82 9 1618 354 322 111 37 chr3 135500072 135500288 -24099495 - Charlie1b DNA MER1_type -287 236 5 1 1618 4557 51 0 4 chr3 135500726 135501258 -24098525 + L1Md_F2 LINE L1 6047 6576 -6 2 1618 4235 71 28 11 chr3 135501338 135501879 -24097904 - L1_Mus3 LINE L1 0 6638 6089 3 1618 300 188 0 0 chr3 135502160 135502224 -24097559 + (TATG)n Simple_repeat Simple_repeat 4 67 0 4 1618 296 216 10 0 chr3 135502272 135502369 -24097414 + (TG)n Simple_repeat Simple_repeat 2 99 0 5 1618 257 0 0 29 chr3 135503031 135503065 -24096718 + (TTTTA)n Simple_repeat Simple_repeat 3 35 0 6 1618 273 57 0 0 chr3 135503237 135503272 -24096511 + (TTACG)n Simple_repeat Simple_repeat 5 39 0 7 1618 216 256 0 0 chr3 135503489 135503532 -24096251 + MIRc SINE MIR 110 152 -116 8 1618 3242 171 169 108 chr3 135503847 135503978 -24095805 - RLTR25B LTR ERVK 0 1028 898 9 1618 333 62 0 0 chr3 135503978 135504026 -24095757 + (TCTG)n Simple_repeat Simple_repeat 2 49 0 1 1618 3242 171 169 108 chr3 135504026 135504863 -24094920 - RLTR25B LTR ERVK -131 897 1 9 1618 338 238 36 0 chr3 135504864 135504948 -24094835 - RLTR25A LTR ERVK -1016 87 1 1 1618 352 266 73 20 chr3 135506027 135506146 -24093637 + B1F SINE Alu 1 120 0 1 1618 191 36 36 0 chr3 135506627 135506655 -24093128 + (TTTTG)n Simple_repeat Simple_repeat 1 29 0 1 1618 309 280 48 29 chr3 135506655 135506758 -24093025 - PB1D10 SINE Alu -13 107 3 1 1618 359 112 0 48 chr3 135507586 135507670 -24092113 + GA-rich Low_complexity Low_complexity 3 82 0 1 1618 388 268 135 40 chr3 135507694 135507842 -24091941 - MLT2B2 LTR ERVL -102 413 252 1 1618 270 258 15 0 chr3 135507913 135507979 -24091804 - MLT2B2 LTR ERVL -376 139 73 1 1618 405 310 157 61 chr3 135508022 135508366 -24091417 - MER31B LTR ERV1 -106 379 3 1 1618 365 182 108 9 chr3 135510107 135510218 -24089565 + Lx9 LINE L1 7521 7642 -2 1 1618 605 265 53 19 chr3 135510457 135510665 -24089118 - B3 SINE B2 -1 215 1 1 1618 494 237 108 16 chr3 135510719 135511008 -24088775 - MLT1A LTR MaLR -16 374 1 2 1618 250 231 98 49 chr3 135511596 135511678 -24088105 - ID SINE ID -137 87 2 2 1618 1086 150 145 0 chr3 135512564 135512757 -24087026 - URR1A DNA MER1_type -1 225 5 2 1618 1336 105 17 0 chr3 135513101 135513282 -24086501 - B2_Mm2 SINE B2 -10 185 2 2 1618 21 0 0 0 chr3 135513315 135513336 -24086447 + AT_rich Low_complexity Low_complexity 1 21 0 2 1618 206 253 242 0 chr3 135513426 135513521 -24086262 + MIR SINE MIR 113 230 -32 2 1618 562 243 0 0 chr3 135513598 135513701 -24086082 + PB1D7 SINE Alu 3 105 -15 2 1618 259 330 8 89 chr3 135513701 135513716 -24086067 + MT2B2 LTR ERVL 167 274 -310 2 1618 959 44 44 0 chr3 135513742 135513900 -24085883 + (TAGA)n Simple_repeat Simple_repeat 3 167 0 2 1618 553 96 61 29 chr3 135514114 135514466 -24085317 + (TAGA)n Simple_repeat Simple_repeat 1 363 0 2 1618 270 0 0 0 chr3 135514530 135514560 -24085223 + (TG)n Simple_repeat Simple_repeat 2 31 0 3 1618 507 14 42 0 chr3 135514562 135514634 -24085149 + (GA)n Simple_repeat Simple_repeat 1 75 0 3 1618 302 362 14 7 chr3 135514910 135515049 -24084734 + MIR SINE MIR 79 218 -44 3 1618 515 313 129 27 chr3 135515155 135515411 -24084372 - B4A SINE B4 -10 282 1 3 1618 456 19 0 0 chr3 135516064 135516117 -24083666 + (CA)n Simple_repeat Simple_repeat 1 53 0 3 1618 365 58 19 19 chr3 135516177 135516230 -24083553 + HAL1-3A_ME LINE L1 1976 2028 -830 3 1618 246 62 0 0 chr3 135516564 135516596 -24083187 + (TCTG)n Simple_repeat Simple_repeat 3 34 0 3 1618 810 295 10 5 chr3 135516816 135517024 -24082759 - B3 SINE B2 -6 210 2 3 1618 372 253 219 33 chr3 135517069 135517220 -24082563 - B3 SINE B2 -15 201 23 3 1618 198 348 64 14 chr3 135517234 135517374 -24082409 + MIRb SINE MIR 85 231 -37 3 1618 582 152 0 185 chr3 135518080 135518242 -24081541 - B1_Mur4 SINE Alu 0 150 19 4 1618 969 274 9 5 chr3 135518437 135518657 -24081126 - ID_B1 SINE B4 -3 221 1 4 1618 719 242 17 6 chr3 135521878 135522057 -24077726 + HAL1-2a_MD LINE L1 2345 2525 -499 4 1618 401 302 70 0 chr3 135523507 135523636 -24076147 + B1F SINE Alu 3 140 -9 4 1618 1030 148 0 7 chr3 135523935 135524085 -24075698 + B1_Mur4 SINE Alu 1 149 -1 4 1618 498 254 82 0 chr3 135524110 135524220 -24075563 - RSINE1 SINE B4 -45 120 2 4 1618 809 332 116 24 chr3 135525008 135525790 -24073993 + Zaphod DNA Tip100 3116 3969 -62 4 1618 212 321 12 58 chr3 135526336 135526422 -24073361 - L2c LINE L2 -6 3381 3300 4 1618 336 24 0 0 chr3 135526519 135526560 -24073223 + (TC)n Simple_repeat Simple_repeat 1 41 0 4 1618 299 200 170 43 chr3 135526998 135527092 -24072691 - PB1D10 SINE Alu -7 110 5 4 1618 366 258 190 54 chr3 135527266 135527487 -24072296 - Lx9 LINE L1 -9 7635 7385 5 1618 353 228 79 24 chr3 135528034 135528160 -24071623 + MamRep434 DNA TcMar 293 425 -1 5 1619 1168 84 6 6 chr3 135528509 135528689 -24071094 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 5 1619 588 163 27 0 chr3 135528697 135528844 -24070939 + CT-rich Low_complexity Low_complexity 3 153 0 5 1619 803 266 142 45 chr3 135529628 135530009 -24069774 + Lx8 LINE L1 6021 6438 -1035 5 1619 507 209 0 0 chr3 135530628 135530738 -24069045 + (CAA)n Simple_repeat Simple_repeat 2 111 0 5 1619 24 0 0 0 chr3 135530871 135530895 -24068888 + AT_rich Low_complexity Low_complexity 1 24 0 5 1619 1227 55 0 0 chr3 135530949 135531095 -24068688 - B1_Mus2 SINE Alu 0 147 2 5 1619 195 305 156 10 chr3 135531643 135531739 -24068044 - MIRm SINE MIR 0 276 167 5 1619 228 336 154 15 chr3 135531743 135531879 -24067904 + MIR SINE MIR 36 190 -72 5 1619 234 0 0 0 chr3 135532373 135532399 -24067384 + (CAAT)n Simple_repeat Simple_repeat 1 26 0 6 1619 1227 49 0 27 chr3 135532638 135532786 -24066997 - B1_Mus2 SINE Alu -2 145 2 6 1619 319 315 148 44 chr3 135533856 135534085 -24065698 - LTR33 LTR ERVL -248 267 15 6 1619 2134 248 175 20 chr3 135534836 135535656 -24064127 - RCHARR1 DNA MER1_type -25 949 3 6 1619 436 200 28 7 chr3 135535714 135535855 -24063928 + (TA)n Simple_repeat Simple_repeat 2 145 0 6 1619 252 0 0 0 chr3 135535855 135535883 -24063900 + (CA)n Simple_repeat Simple_repeat 2 29 0 6 1619 350 311 80 20 chr3 135536352 135536552 -24063231 - ERVL-E-int LTR ERVL -1534 4133 3922 6 1619 204 122 0 0 chr3 135537689 135537730 -24062053 + (CAAAAA)n Simple_repeat Simple_repeat 2 42 0 6 1619 229 48 47 23 chr3 135538423 135538466 -24061317 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 6 1619 911 188 0 0 chr3 135538466 135538615 -24061168 - B1_Mur1 SINE Alu 0 149 1 6 1619 345 109 0 0 chr3 135539275 135539330 -24060453 + (TATG)n Simple_repeat Simple_repeat 2 56 0 7 1619 219 279 41 35 chr3 135539531 135539702 -24060081 + CT-rich Low_complexity Low_complexity 1 172 0 7 1619 916 50 17 0 chr3 135539762 135539882 -24059901 - B1_Mus2 SINE Alu -1 146 25 7 1619 1911 241 40 26 chr3 135540040 135540492 -24059291 + Lx6 LINE L1 6995 7452 -8 7 1619 240 307 75 57 chr3 135541537 135541696 -24058087 + MIR SINE MIR 77 238 -24 7 1619 1004 157 56 6 chr3 135541778 135541957 -24057826 + URR1B DNA MER1_type 1 188 -37 7 1619 4713 86 16 16 chr3 135541962 135542601 -24057182 - L1_Mus4 LINE L1 0 6636 5998 7 1619 6982 61 8 22 chr3 135542622 135543537 -24056246 - L1_Mus1 LINE L1 -1 6566 5665 7 1619 4387 95 23 0 chr3 135543537 135544366 -24055417 - L1_Mus4 LINE L1 -625 6011 5169 7 1619 8120 137 1 12 chr3 135544369 135545639 -24054144 + L1_Mus4 LINE L1 3902 5157 -726 7 1619 242 353 40 40 chr3 135545688 135545915 -24053868 + MARNA DNA Mariner 294 520 -66 7 1619 1359 86 21 0 chr3 135546732 135546919 -24052864 + L1_Mus1 LINE L1 6377 6567 0 7 1619 405 0 0 0 chr3 135547474 135547519 -24052264 + (TTA)n Simple_repeat Simple_repeat 2 46 0 8 1619 333 0 0 0 chr3 135548252 135548289 -24051494 + (TG)n Simple_repeat Simple_repeat 2 38 0 8 1619 226 200 0 167 chr3 135549222 135549318 -24050465 + ID_B1 SINE B4 125 204 -20 8 1619 333 0 0 0 chr3 135549397 135549434 -24050349 + (TATAG)n Simple_repeat Simple_repeat 4 40 0 8 1619 345 24 0 0 chr3 135550307 135550349 -24049434 + (CAA)n Simple_repeat Simple_repeat 2 43 0 8 1619 1311 109 57 0 chr3 135551586 135551761 -24048022 + B2_Mm2 SINE B2 2 186 -9 8 1619 466 297 159 0 chr3 135552074 135552219 -24047564 - MTD LTR MaLR -53 366 199 8 1619 652 209 122 0 chr3 135552222 135552370 -24047413 + Lx9 LINE L1 6776 6941 -703 8 1619 316 341 39 134 chr3 135553666 135554055 -24045728 - MLT1J LTR MaLR -127 385 34 8 1619 1085 238 36 22 chr3 135554129 135554404 -24045379 - B4A SINE B4 -12 280 2 8 1619 414 0 0 0 chr3 135554519 135554565 -24045218 + (TC)n Simple_repeat Simple_repeat 2 47 0 9 1619 342 0 0 0 chr3 135554585 135554623 -24045160 + (CA)n Simple_repeat Simple_repeat 1 38 0 9 1619 309 330 0 0 chr3 135554721 135554821 -24044962 - RMER15 LTR ERVL -105 470 371 9 1619 30 69 0 0 chr3 135555235 135555293 -24044490 + AT_rich Low_complexity Low_complexity 1 58 0 9 1619 360 291 63 52 chr3 135555657 135555831 -24043952 - LTR41B LTR ERVL -582 176 1 9 1619 7736 99 9 4 chr3 135555939 135557247 -24042536 - Lx LINE L1 -5 6649 5333 9 1619 4489 145 36 36 chr3 135557246 135557352 -24042431 + L1_Mm LINE L1 4538 4637 -1246 9 1619 302 0 26 0 chr3 135557352 135557390 -24042393 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 9 1619 4489 145 36 36 chr3 135557390 135558089 -24041694 + L1_Mm LINE L1 4638 5343 -540 9 1619 1134 289 93 23 chr3 135558291 135558901 -24040882 + L1MA5 LINE L1 5647 6299 -1 9 1619 3314 130 182 15 chr3 135559552 135560145 -24039638 + RLTR17 LTR ERVK 1 692 0 9 1619 1132 115 81 14 chr3 135560461 135560672 -24039111 + Lx LINE L1 6430 6654 0 1 1619 303 140 0 0 chr3 135560674 135560724 -24039059 + (GAAA)n Simple_repeat Simple_repeat 2 51 0 1 1619 710 271 160 24 chr3 135560725 135561013 -24038770 - ORR1D2 LTR MaLR -43 327 1 1 1619 441 0 0 0 chr3 135561565 135561614 -24038169 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 1619 956 275 16 112 chr3 135561745 135562068 -24037715 - B4A SINE B4 0 292 1 1 1619 432 0 0 0 chr3 135563053 135563101 -24036682 + (TG)n Simple_repeat Simple_repeat 1 48 0 1 1619 219 69 0 0 chr3 135563103 135563132 -24036651 + (GA)n Simple_repeat Simple_repeat 2 30 0 1 1619 1409 213 116 3 chr3 135563681 135564010 -24035773 - ORR1D1 LTR MaLR -8 366 1 1 1619 229 295 89 62 chr3 135566102 135566214 -24033569 + MIRb SINE MIR 114 228 -40 1 1619 250 26 51 0 chr3 135566325 135566364 -24033419 + (TTTAA)n Simple_repeat Simple_repeat 3 43 0 1 1619 495 0 0 0 chr3 135566422 135566477 -24033306 + (TCTA)n Simple_repeat Simple_repeat 2 56 0 1 1619 851 105 53 59 chr3 135566478 135566630 -24033153 - B2_Mm2 SINE B2 -43 152 2 1 1619 297 293 46 103 chr3 135567214 135567389 -24032394 - RSINE1 SINE B4 0 165 1 1 1619 384 22 0 0 chr3 135568196 135568241 -24031542 + (TG)n Simple_repeat Simple_repeat 1 45 0 1 1619 878 198 94 0 chr3 135568512 135568704 -24031079 - B3 SINE B2 0 216 7 1 1619 364 295 182 66 chr3 135569123 135569381 -24030402 - B4A SINE B4 -2 290 3 1 1619 747 219 21 63 chr3 135571048 135571238 -24028545 - B3A SINE B2 -6 192 11 1 1619 1081 253 109 19 chr3 135571300 135571622 -24028161 - MER58D DNA MER1_type -17 369 19 1 1619 442 273 69 32 chr3 135571952 135572141 -24027642 - Lx7 LINE L1 -28 7668 7473 1 1619 22 0 0 0 chr3 135572142 135572164 -24027619 + AT_rich Low_complexity Low_complexity 1 22 0 1 1619 23 0 0 0 chr3 135572305 135572328 -24027455 + AT_rich Low_complexity Low_complexity 1 23 0 1 1619 294 275 96 88 chr3 135572361 135572612 -24027171 + L1M5 LINE L1 5565 5817 -307 1 1619 937 162 0 21 chr3 135573849 135574083 -24025700 + CT-rich Low_complexity Low_complexity 1 228 0 1 1619 207 0 0 0 chr3 135574083 135574106 -24025677 + (TTCC)n Simple_repeat Simple_repeat 2 24 0 1 1619 387 0 0 0 chr3 135574106 135574149 -24025634 + (TC)n Simple_repeat Simple_repeat 1 43 0 1 1619 284 229 10 129 chr3 135574159 135574269 -24025514 - PB1 SINE Alu -51 98 1 1 1619 262 260 167 20 chr3 135574423 135574525 -24025258 + B1F SINE Alu 28 144 -5 1 1619 248 290 14 0 chr3 135574537 135574606 -24025177 + ID4_ SINE ID 3 72 -11 1 1619 499 200 32 32 chr3 135574879 135575003 -24024780 - B1_Mus1 SINE Alu -24 124 1 1 1619 495 101 0 0 chr3 135575095 135575174 -24024609 + (TATG)n Simple_repeat Simple_repeat 2 80 0 1 1619 266 174 65 0 chr3 135575195 135575241 -24024542 - ID2 SINE ID -17 66 18 1 1619 305 248 59 25 chr3 135575243 135575349 -24024434 - B1F SINE Alu -32 115 3 1 1619 272 279 0 32 chr3 135575298 135575361 -24024422 - B4A SINE B4 -154 138 78 1 1619 180 284 56 69 chr3 135575602 135575674 -24024109 - L3b LINE CR1 -104 378 308 1 1619 233 229 16 16 chr3 135575801 135575863 -24023920 - MER34A LTR ERV1 -13 529 468 1 1619 369 0 0 0 chr3 135575990 135576031 -24023752 + (TTTA)n Simple_repeat Simple_repeat 2 42 0 1 1619 1126 73 0 0 chr3 135576031 135576167 -24023616 - B1_Mus1 SINE Alu -12 136 1 1 1619 3936 47 2 2 chr3 135576240 135576691 -24023092 - L1_Mus1 LINE L1 0 6567 6117 1 1619 291 79 0 0 chr3 135576691 135576729 -24023054 + L1_Mm LINE L1 5169 5206 -677 1 1619 3920 127 7 2 chr3 135576740 135577292 -24022491 - Lx2 LINE L1 -1 6996 6442 1 1619 329 247 140 0 chr3 135577297 135577390 -24022393 - MER34A LTR ERV1 -452 119 14 1 1619 194 0 39 0 chr3 135578530 135578556 -24021227 + (TTATA)n Simple_repeat Simple_repeat 5 31 0 1 1619 939 223 69 0 chr3 135579031 135579233 -24020550 - B3 SINE B2 0 216 1 1 1619 215 300 24 36 chr3 135579253 135579336 -24020447 + L2a LINE L2 2798 2879 -540 1 1619 432 319 10 106 chr3 135579354 135579561 -24020222 + B4A SINE B4 1 187 -105 1 1619 578 141 11 33 chr3 135579592 135579776 -24020007 + (CA)n Simple_repeat Simple_repeat 1 180 0 1 1619 244 208 9 9 chr3 135579808 135579915 -24019868 + (CA)n Simple_repeat Simple_repeat 1 107 0 1 1619 373 155 23 15 chr3 135579933 135580064 -24019719 + (CA)n Simple_repeat Simple_repeat 1 132 0 1 1619 297 0 0 0 chr3 135580115 135580148 -24019635 + (CA)n Simple_repeat Simple_repeat 2 34 0 1 1619 333 0 0 0 chr3 135580148 135580184 -24019599 + (GA)n Simple_repeat Simple_repeat 2 38 0 1 1619 26 0 0 0 chr3 135580186 135580212 -24019571 + AT_rich Low_complexity Low_complexity 1 26 0 1 1619 206 341 179 0 chr3 135580303 135580532 -24019251 + L2a LINE L2 3027 3296 -130 1 1619 841 262 69 37 chr3 135582155 135582401 -24017382 - ORR1D2 LTR MaLR 0 370 117 1 1619 834 184 0 20 chr3 135582477 135582627 -24017156 - ORR1C1 LTR MaLR 0 378 232 1 1619 309 51 0 0 chr3 135582631 135582670 -24017113 + (TG)n Simple_repeat Simple_repeat 1 39 0 1 1619 555 16 0 0 chr3 135582670 135582733 -24017050 + (GA)n Simple_repeat Simple_repeat 1 64 0 1 1619 7972 66 5 0 chr3 135582773 135583919 -24015864 - L1_Mus1 LINE L1 0 6567 5416 1 1619 3066 197 109 106 chr3 135583993 135584361 -24015422 + RMER17B LTR ERVK 1 441 -517 1 1619 530 29 0 14 chr3 135584361 135584430 -24015353 + (TC)n Simple_repeat Simple_repeat 1 68 0 1 1619 3066 197 109 106 chr3 135584430 135585016 -24014767 + RMER17B LTR ERVK 442 958 0 1 1619 3103 237 42 58 chr3 135585334 135586323 -24013460 - RCHARR1 DNA MER1_type -1 973 1 1 1619 252 130 0 0 chr3 135586567 135586613 -24013170 + (TG)n Simple_repeat Simple_repeat 2 47 0 1 1619 232 328 61 68 chr3 135588278 135588425 -24011358 - ORR1C1 LTR MaLR -118 241 96 1 1619 302 354 16 8 chr3 135588673 135588801 -24010982 - MT2A LTR ERVL -72 461 333 1 1619 324 265 58 40 chr3 135589546 135589719 -24010064 + L1MA8 LINE L1 6091 6266 -25 1 1619 1015 154 139 31 chr3 135589783 135589977 -24009806 - B3 SINE B2 0 216 2 1 1619 769 332 78 9 chr3 135592007 135592353 -24007430 - MTE2b LTR MaLR -4 375 6 1 1619 234 0 0 0 chr3 135592537 135592563 -24007220 + (CA)n Simple_repeat Simple_repeat 1 26 0 1 1619 419 263 25 50 chr3 135592569 135592689 -24007094 - MER58B DNA MER1_type -15 326 210 1 1619 1749 72 5 9 chr3 135592857 135593081 -24006702 + L1Md_F2 LINE L1 6355 6577 -5 1 1619 895 173 0 13 chr3 135593141 135593293 -24006490 - B1_Mur4 SINE Alu 0 150 1 1 1619 984 233 23 32 chr3 135593780 135593997 -24005786 - B3 SINE B2 0 216 2 1 1619 223 361 0 27 chr3 135594556 135594630 -24005153 - ID4_ SINE ID -1 82 11 1 1619 495 274 65 49 chr3 135595148 135595336 -24004447 + MER58A DNA MER1_type 26 220 -4 1 1619 1213 71 0 0 chr3 135596464 135596605 -24003178 + B1_Mm SINE Alu 1 141 -6 1 1619 305 24 0 23 chr3 135596608 135596651 -24003132 + (CAAA)n Simple_repeat Simple_repeat 2 43 0 1 1619 223 163 0 0 chr3 135596651 135596694 -24003089 + A-rich Low_complexity Low_complexity 1 43 0 1 1619 346 263 162 0 chr3 135596942 135597041 -24002742 + PB1D10 SINE Alu 3 117 0 1 1619 366 123 0 0 chr3 135597667 135597724 -24002059 + (TG)n Simple_repeat Simple_repeat 1 57 0 1 1619 862 283 15 0 chr3 135597779 135597984 -24001799 - B4A SINE B4 -84 208 1 1 1619 24 53 0 0 chr3 135597991 135598029 -24001754 + AT_rich Low_complexity Low_complexity 1 38 0 1 1619 265 273 0 0 chr3 135598317 135598383 -24001400 + B4A SINE B4 2 67 -225 1 1619 1579 195 82 9 chr3 135598429 135598770 -24001013 - ORR1D1 LTR MaLR -8 366 1 1 1619 1689 219 34 26 chr3 135598780 135598926 -24000857 + ORR1D1 LTR MaLR 21 164 -210 1 1619 3442 47 3 0 chr3 135598926 135599310 -24000473 - IAPEY_LTR LTR ERVK 0 385 1 1 1619 1689 219 34 26 chr3 135599310 135599514 -24000269 + ORR1D1 LTR MaLR 165 374 0 1 1619 297 0 0 0 chr3 135599594 135599627 -24000156 + (TG)n Simple_repeat Simple_repeat 2 34 0 1 1619 2854 165 43 8 chr3 135599659 135600167 -23999616 - RLTR11A2 LTR ERVK -1 526 1 1 1619 411 294 148 48 chr3 135600181 135600410 -23999373 + MLT1A LTR MaLR 123 374 0 1 1619 255 320 139 26 chr3 135600595 135600790 -23998993 - L2b LINE L2 -98 3289 3071 1 1619 1623 313 57 26 chr3 135601666 135602248 -23997535 + RMER15-int LTR ERVL 184 774 -4225 1 1619 189 0 0 0 chr3 135602248 135602269 -23997514 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 1 1619 1623 313 57 26 chr3 135602269 135602405 -23997378 + RMER15-int LTR ERVL 775 924 -4075 1 1619 261 308 0 0 chr3 135602460 135602525 -23997258 + RMER15-int LTR ERVL 989 1053 -3946 1 1619 1493 318 64 9 chr3 135602794 135603340 -23996443 + RMER15-int LTR ERVL 1988 2563 -2436 1 1619 850 296 105 16 chr3 135603412 135603908 -23995875 + RMER15-int LTR ERVL 4181 4720 -279 1 1619 21 0 0 0 chr3 135604063 135604084 -23995699 + AT_rich Low_complexity Low_complexity 1 21 0 1 1619 690 185 0 0 chr3 135604084 135604219 -23995564 + (CA)n Simple_repeat Simple_repeat 2 136 0 1 1619 380 241 126 40 chr3 135604223 135604302 -23995481 + Lx8 LINE L1 6962 7053 -420 1 1619 1665 224 58 0 chr3 135604302 135604650 -23995133 + ORR1D2 LTR MaLR 1 368 -2 1 1619 380 241 126 40 chr3 135604650 135604721 -23995062 + Lx8 LINE L1 7054 7125 -348 1 1619 240 330 102 0 chr3 135604902 135605020 -23994763 + RMER15 LTR ERVL 432 561 -14 1 1619 914 221 6 6 chr3 135605065 135605229 -23994554 + RSINE1 SINE B4 2 165 0 1 1619 414 0 0 0 chr3 135605354 135605400 -23994383 + (TC)n Simple_repeat Simple_repeat 1 46 0 1 1619 1047 266 104 58 chr3 135605633 135606112 -23993671 - MLT1D LTR MaLR -2 503 3 1 1619 405 276 9 28 chr3 135606490 135606598 -23993185 - B1F SINE Alu -1 148 43 1 1619 4926 111 35 11 chr3 135606634 135606657 -23993126 - Lx LINE L1 0 6654 6623 1 1619 180 0 0 0 chr3 135606657 135606677 -23993106 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 1 1619 4926 111 35 11 chr3 135606677 135607371 -23992412 - Lx LINE L1 -32 6622 5921 1 1619 326 322 57 47 chr3 135607391 135607583 -23992200 + L2 LINE L2 2344 2537 -882 1 1619 180 97 0 0 chr3 135609985 135610016 -23989767 + (TAA)n Simple_repeat Simple_repeat 1 31 0 1 1619 275 321 119 21 chr3 135610982 135611125 -23988658 - L2a LINE L2 -251 3175 3019 1 1619 272 320 52 63 chr3 135611326 135611477 -23988306 - L2a LINE L2 -667 2752 2592 1 1619 1218 62 17 0 chr3 135611477 135611654 -23988129 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 1 1619 285 320 52 63 chr3 135611654 135611772 -23988011 - L2a LINE L2 -828 2591 2486 1 1619 1365 225 147 17 chr3 135611944 135612305 -23987478 + MTD LTR MaLR 10 417 -2 1 1619 408 229 80 17 chr3 135612307 135612440 -23987343 + MTD-int LTR MaLR 1 133 -965 1 1619 1292 244 56 91 chr3 135612473 135613060 -23986723 + MTD-int LTR MaLR 76 626 -632 1 1619 421 335 6 30 chr3 135613294 135613463 -23986320 + MER5B DNA MER1_type 7 171 -7 1 1619 697 220 64 0 chr3 135613731 135613904 -23985879 + Lx5 LINE L1 6856 7039 -11 2 1619 347 202 10 0 chr3 135614779 135614878 -23984905 + (TG)n Simple_repeat Simple_repeat 1 100 0 2 1619 324 203 15 15 chr3 135614893 135614958 -23984825 - B4A SINE B4 -13 279 215 2 1619 482 292 44 75 chr3 135614981 135615140 -23984643 - RSINE1 SINE B4 0 165 12 2 1619 631 260 0 16 chr3 135615207 135615336 -23984447 - B1_Mur1 SINE Alu -20 129 3 2 1619 823 303 18 13 chr3 135615339 135615563 -23984220 - B4A SINE B4 -65 227 3 2 1619 570 269 98 15 chr3 135616211 135616415 -23983368 - ID_B1 SINE B4 -2 222 2 2 1619 1727 153 128 106 chr3 135616487 135616939 -23982844 + RMER4A LTR ERVK 5 466 0 2 1619 774 140 98 0 chr3 135616941 135617084 -23982699 + RMER4A LTR ERVK 308 464 -2 2 1619 182 118 0 29 chr3 135617264 135617277 -23982506 + (CATATA)n Simple_repeat Simple_repeat 6 18 0 2 1619 387 60 0 0 chr3 135617277 135617327 -23982456 + (TG)n Simple_repeat Simple_repeat 1 50 0 2 1619 182 118 0 29 chr3 135617327 135617348 -23982435 + (CATATA)n Simple_repeat Simple_repeat 1 21 0 2 1619 285 317 113 66 chr3 135617541 135617963 -23981820 + LTR33C LTR ERVL 7 447 -216 2 1619 248 291 63 0 chr3 135617965 135618044 -23981739 + MTC LTR MaLR 338 421 0 2 1619 289 286 71 0 chr3 135618423 135618507 -23981276 + ERVL-E-int LTR ERVL 734 823 -4844 2 1619 14533 8 0 0 chr3 135618872 135620589 -23979194 + L1Md_A LINE L1 3870 5586 -297 2 1619 8771 18 0 0 chr3 135620589 135621585 -23978198 + L1Md_A LINE L1 5587 6582 0 2 1619 471 48 0 0 chr3 135621689 135621751 -23978032 + (CA)n Simple_repeat Simple_repeat 2 63 0 2 1619 260 65 0 42 chr3 135623112 135623160 -23976623 + (TTTTTG)n Simple_repeat Simple_repeat 2 47 0 2 1619 8372 46 9 1 chr3 135623983 135625765 -23974018 - L1Md_F3 LINE L1 -14 6570 4773 2 1619 444 37 0 0 chr3 135626099 135626153 -23973630 + (TA)n Simple_repeat Simple_repeat 2 55 0 2 1619 180 0 0 0 chr3 135626793 135626813 -23972970 + (TTTTTG)n Simple_repeat Simple_repeat 2 21 0 2 1619 22 0 0 0 chr3 135626897 135626919 -23972864 + AT_rich Low_complexity Low_complexity 1 22 0 2 1619 450 310 149 39 chr3 135627262 135627517 -23972266 - L2 LINE L2 -384 3035 2746 2 1619 2526 51 3 0 chr3 135627517 135627833 -23971950 + L1Md_F2 LINE L1 6254 6570 -12 2 1619 450 310 149 39 chr3 135627833 135627886 -23971897 - L2 LINE L2 -674 2745 2693 2 1619 607 306 0 0 chr3 135628031 135628178 -23971605 - B3 SINE B2 -69 147 1 2 1619 6701 116 20 14 chr3 135628314 135629423 -23970360 - Lx3_Mus LINE L1 -24 6985 5870 2 1619 1463 73 19 0 chr3 135629419 135629625 -23970158 + Lx3_Mus LINE L1 5675 5884 -1125 2 1619 297 393 0 0 chr3 135629641 135629730 -23970053 - ID_B1 SINE B4 -52 172 84 2 1619 418 324 162 67 chr3 135629736 135630435 -23969348 - L1ME1 LINE L1 -2 6177 5413 2 1619 268 290 51 51 chr3 135630663 135630761 -23969022 - MIRc SINE MIR -124 144 47 2 1619 495 229 54 16 chr3 135630870 135631007 -23968776 + B1F SINE Alu 1 147 -2 2 1619 29 0 0 0 chr3 135631455 135631484 -23968299 + AT_rich Low_complexity Low_complexity 1 29 0 2 1619 5514 103 25 32 chr3 135631485 135632356 -23967427 - Lx3C LINE L1 -3 6973 6109 2 1619 229 314 42 28 chr3 135632873 135632887 -23966896 + ID4_ SINE ID 2 74 -9 2 1619 271 293 17 0 chr3 135632887 135632945 -23966838 + tRNA-Ala-GCY_ tRNA tRNA 10 68 -7 2 1619 279 0 0 0 chr3 135632945 135632976 -23966807 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 2 1619 306 333 35 21 chr3 135633430 135633571 -23966212 - MIR SINE MIR -58 204 62 2 1619 189 0 0 0 chr3 135633576 135633597 -23966186 + (TTTTG)n Simple_repeat Simple_repeat 1 21 0 2 1619 240 125 0 24 chr3 135633863 135633904 -23965879 - MER66C LTR ERV1 -62 493 454 2 1619 325 337 70 103 chr3 135634736 135635123 -23964660 + LTR81C LTR ERV1? 780 1153 0 2 1619 1407 210 88 93 chr3 135635985 135636044 -23963739 - MTB_Mm LTR MaLR -2 405 340 2 1619 234 0 0 0 chr3 135636044 135636070 -23963713 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 2 1619 1407 210 88 93 chr3 135636070 135636398 -23963385 - MTB_Mm LTR MaLR -68 339 20 2 1619 393 342 77 0 chr3 135636575 135636692 -23963091 + RSINE1 SINE B4 15 140 -25 2 1619 438 36 0 0 chr3 135636692 135636748 -23963035 + (CA)n Simple_repeat Simple_repeat 2 57 0 2 1619 285 304 130 5 chr3 135636904 135637119 -23962664 - L1ME1 LINE L1 -10 6169 5928 2 1619 382 351 35 12 chr3 135637694 135637742 -23962041 + MLT1J LTR MaLR 119 169 -343 2 1619 1360 252 75 28 chr3 135637742 135638142 -23961641 + MTD LTR MaLR 1 419 0 2 1619 382 351 35 12 chr3 135638142 135638266 -23961517 + MLT1J LTR MaLR 170 295 -217 2 1619 1056 116 0 0 chr3 135638829 135638975 -23960808 + B1_Mus1 SINE Alu 1 146 -2 2 1619 210 237 17 0 chr3 135638977 135639036 -23960747 + (CAAA)n Simple_repeat Simple_repeat 3 62 0 2 1619 920 139 6 0 chr3 135639142 135639300 -23960483 + (TC)n Simple_repeat Simple_repeat 2 160 0 2 1619 715 336 24 28 chr3 135639720 135639968 -23959815 - MLT1A0 LTR MaLR -22 343 97 2 1619 7540 54 6 4 chr3 135640008 135641139 -23958644 - L1Md_F2 LINE L1 -3 6579 5447 2 1619 3240 45 2 8 chr3 135642199 135642597 -23957186 + MTA_Mm LTR MaLR 1 396 0 2 1619 402 21 0 0 chr3 135642698 135642745 -23957038 + (TC)n Simple_repeat Simple_repeat 2 48 0 2 1619 297 0 0 0 chr3 135642745 135642777 -23957006 + (TG)n Simple_repeat Simple_repeat 2 34 0 2 1619 32419 50 2 20 chr3 135642900 135645392 -23954391 - L1Md_A LINE L1 0 6585 4230 2 1619 805 110 134 0 chr3 135645392 135645519 -23954264 - B1_Mus2 SINE Alu -1 146 3 2 1619 32419 79 3 29 chr3 135645519 135649165 -23950618 - L1Md_A LINE L1 -1657 4229 610 2 1619 543 189 202 91 chr3 135649166 135649364 -23950419 - URR1B DNA MER1_type -5 220 1 2 1619 285 300 26 43 chr3 135649430 135649545 -23950238 + RMER5 LTR ERV1 115 227 -307 2 1619 1232 248 22 7 chr3 135649755 135650031 -23949752 - ORR1D2 LTR MaLR 0 370 91 2 1619 921 240 106 86 chr3 135650053 135650498 -23949285 - RMER4B LTR ERVK -27 584 16 2 1619 372 171 156 13 chr3 135650510 135650587 -23949196 - ORR1D2 LTR MaLR -282 88 1 2 1619 301 189 0 0 chr3 135650589 135650642 -23949141 + RMER5 LTR ERV1 430 482 -52 2 1619 293 0 0 26 chr3 135651021 135651059 -23948724 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 2 1619 864 167 7 0 chr3 135651063 135651201 -23948582 - B1_Mur4 SINE Alu -11 139 1 2 1619 271 259 35 0 chr3 135651679 135651737 -23948046 + ID4_ SINE ID 21 80 -3 2 1619 351 113 0 0 chr3 135652657 135652710 -23947073 + (TATG)n Simple_repeat Simple_repeat 2 54 0 2 1619 610 158 101 0 chr3 135652710 135652849 -23946934 - Lx2 LINE L1 -7 6990 6838 2 1619 702 184 6 18 chr3 135654675 135654841 -23944942 + GA-rich Low_complexity Low_complexity 3 166 0 2 1619 182 234 75 45 chr3 135655490 135655557 -23944226 - L2a LINE L2 -6 3420 3352 2 1619 1482 175 118 5 chr3 135655761 135655885 -23943898 - Lx9 LINE L1 -1 7643 7519 2 1619 405 0 0 0 chr3 135655885 135655930 -23943853 + (TA)n Simple_repeat Simple_repeat 2 46 0 2 1619 1482 175 118 5 chr3 135655930 135656178 -23943605 - Lx9 LINE L1 -126 7518 7229 2 1619 249 222 0 0 chr3 135656282 135656345 -23943438 + GA-rich Low_complexity Low_complexity 2 64 0 2 1619 711 30 40 0 chr3 135656346 135656447 -23943336 + (TAGA)n Simple_repeat Simple_repeat 3 107 0 2 1619 1635 85 0 98 chr3 135657101 135657375 -23942408 - L1_Mus2 LINE L1 0 6566 6320 2 1619 739 251 111 26 chr3 135658585 135658962 -23940821 - L1MA4 LINE L1 -123 6177 5769 2 1619 308 281 0 19 chr3 135659343 135659448 -23940335 - L1MA6 LINE L1 -384 5919 5817 2 1620 345 268 83 67 chr3 135659582 135659702 -23940081 - RSINE1 SINE B4 -31 134 13 2 1620 508 312 62 25 chr3 135659712 135660080 -23939703 - L1MA6 LINE L1 -472 5828 5447 2 1620 553 299 107 10 chr3 135660086 135660282 -23939501 - ORR1E LTR MaLR -144 215 1 2 1620 4304 304 74 29 chr3 135660282 135661741 -23938042 - MTEa-int LTR MaLR -53 1527 3 2 1620 427 174 70 20 chr3 135661742 135661842 -23937941 - MTEa LTR MaLR 0 379 275 2 1620 288 262 74 80 chr3 135661843 135662005 -23937778 + RLTR15 LTR ERVK 3 163 -196 2 1620 302 335 11 5 chr3 135662136 135662322 -23937461 - L1_Mur3 LINE L1 -2481 3399 3213 2 1620 34 65 0 0 chr3 135662528 135662590 -23937193 + AT_rich Low_complexity Low_complexity 1 62 0 2 1620 2854 73 3 0 chr3 135665202 135665572 -23934211 + L1_Mus1 LINE L1 6197 6567 0 2 1620 231 33 0 0 chr3 135665816 135665824 -23933959 + (TA)n Simple_repeat Simple_repeat 2 9 0 2 1620 438 108 0 0 chr3 135665824 135665889 -23933894 + (CA)n Simple_repeat Simple_repeat 2 66 0 2 1620 231 33 0 0 chr3 135665889 135665910 -23933873 + (TA)n Simple_repeat Simple_repeat 1 21 0 2 1620 372 312 99 61 chr3 135666239 135666451 -23933332 - MIRb SINE MIR -15 253 34 2 1620 277 57 94 0 chr3 135666485 135666538 -23933245 + T-rich Low_complexity Low_complexity 3 60 0 2 1620 1668 174 43 33 chr3 135666608 135666976 -23932807 + ORR1D1 LTR MaLR 1 372 -2 2 1620 193 315 200 7 chr3 135667197 135667347 -23932436 - MIRc SINE MIR -51 217 39 2 1620 226 74 35 69 chr3 135668114 135668172 -23931611 + (TTTA)n Simple_repeat Simple_repeat 1 56 0 2 1620 21 0 0 0 chr3 135668172 135668193 -23931590 + AT_rich Low_complexity Low_complexity 1 21 0 2 1620 2139 220 55 39 chr3 135668532 135669094 -23930689 - RMER15 LTR ERVL -1 574 4 2 1620 21 0 0 0 chr3 135669308 135669329 -23930454 + AT_rich Low_complexity Low_complexity 1 21 0 2 1620 737 146 0 7 chr3 135670077 135670215 -23929568 + (CTGGGG)n Simple_repeat Simple_repeat 6 142 0 2 1620 556 295 16 0 chr3 135671510 135671633 -23928150 - B4A SINE B4 0 292 168 2 1620 956 176 98 0 chr3 135671633 135671826 -23927957 - URR1B DNA MER1_type 0 225 14 2 1620 451 344 74 0 chr3 135671855 135672018 -23927765 - B4A SINE B4 -117 175 1 2 1620 180 0 0 0 chr3 135672438 135672458 -23927325 + (TTAA)n Simple_repeat Simple_repeat 2 21 0 2 1620 390 248 9 87 chr3 135674120 135674235 -23925548 - PB1D9 SINE Alu 0 120 15 2 1620 658 276 96 147 chr3 135674442 135674871 -23924912 - MTD LTR MaLR 0 419 13 2 1620 1142 262 11 7 chr3 135674930 135675207 -23924576 - MERVL_2A-int LTR ERVL -921 4840 4563 2 1620 333 0 0 0 chr3 135675432 135675469 -23924314 + (TG)n Simple_repeat Simple_repeat 1 37 0 2 1620 568 301 68 17 chr3 135675469 135675638 -23924145 - B3A SINE B2 -18 180 2 3 1620 292 267 0 75 chr3 135675714 135675807 -23923976 - ORR1D1 LTR MaLR 0 374 289 3 1620 330 328 80 0 chr3 135675811 135676012 -23923771 - L2 LINE L2 -1385 2034 1818 3 1620 5166 76 11 12 chr3 135676069 135676787 -23922996 - L1_Mus4 LINE L1 0 6636 5920 3 1620 717 12 0 0 chr3 135677158 135677240 -23922543 + (TTTC)n Simple_repeat Simple_repeat 3 84 0 3 1620 566 93 0 53 chr3 135677641 135677754 -23922029 - L1_Mus3 LINE L1 -1 6637 6531 3 1620 894 277 144 49 chr3 135677802 135678315 -23921468 - Lx8 LINE L1 -9 7464 6903 3 1620 367 313 18 32 chr3 135678433 135678654 -23921129 - HAL1 LINE L1 -940 1567 1350 3 1620 29 0 0 0 chr3 135680818 135680847 -23918936 + AT_rich Low_complexity Low_complexity 1 29 0 3 1620 734 242 6 30 chr3 135680952 135681118 -23918665 - B3 SINE B2 -54 162 1 3 1620 278 348 26 26 chr3 135681118 135681222 -23918561 - MER3 DNA MER1_type -97 112 9 3 1620 206 306 141 0 chr3 135681318 135681403 -23918380 + L2a LINE L2 3323 3419 -7 3 1620 2951 36 3 8 chr3 135681705 135682066 -23917717 - L1Md_F3 LINE L1 0 6584 6226 3 1620 753 42 0 0 chr3 135682151 135682247 -23917536 - L1Md_T LINE L1 -1440 4443 4348 3 1620 9526 19 0 0 chr3 135682246 135683392 -23916391 + L1Md_T LINE L1 4441 5586 -297 3 1620 8468 34 0 0 chr3 135683392 135684388 -23915395 + L1Md_T LINE L1 5587 6582 0 3 1620 189 0 0 0 chr3 135684423 135684444 -23915339 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 3 1620 257 325 39 0 chr3 135685063 135685140 -23914643 - ID4_ SINE ID -3 80 1 3 1620 198 0 0 0 chr3 135685152 135685174 -23914609 + (TTAA)n Simple_repeat Simple_repeat 1 22 0 3 1620 229 333 58 54 chr3 135685174 135685440 -23914343 - Lx8 LINE L1 -13 7460 7194 3 1620 304 275 54 199 chr3 135686238 135686424 -23913359 + MTE2a LTR MaLR 207 365 -14 3 1620 374 57 0 19 chr3 135686700 135686754 -23913029 + (TA)n Simple_repeat Simple_repeat 1 53 0 3 1620 636 202 9 168 chr3 135687630 135687844 -23911939 + MTEb LTR MaLR 198 377 -2 3 1620 852 287 45 11 chr3 135687844 135688224 -23911559 - L1MCa LINE L1 -2401 3920 3528 3 1620 267 330 0 69 chr3 135688380 135688481 -23911302 - RSINE1 SINE B4 -68 97 4 3 1620 257 211 0 0 chr3 135688489 135688546 -23911237 - L1MCa LINE L1 -3114 3207 3151 3 1620 181 395 0 0 chr3 135688596 135688677 -23911106 - L2 LINE L2 -337 3082 3002 3 1620 1613 286 133 71 chr3 135689024 135690458 -23909325 - L1MCa LINE L1 -4719 1789 285 3 1620 1919 172 95 15 chr3 135690458 135690848 -23908935 + MTC LTR MaLR 1 421 0 3 1620 1613 286 133 71 chr3 135690848 135691098 -23908685 - L1MCa LINE L1 -6224 284 1 3 1620 39 0 0 0 chr3 135691830 135691869 -23907914 + AT_rich Low_complexity Low_complexity 1 39 0 3 1620 3198 305 93 33 chr3 135692569 135693727 -23906056 - Lx8 LINE L1 -40 7433 6183 3 1620 858 126 0 0 chr3 135693727 135693862 -23905921 + (TA)n Simple_repeat Simple_repeat 2 136 0 3 1620 3198 286 66 25 chr3 135693862 135694499 -23905284 - Lx8 LINE L1 -1291 6182 5504 3 1620 3458 51 7 11 chr3 135694676 135695132 -23904651 - L1Md_F2 LINE L1 0 6582 6129 3 1620 33 0 0 0 chr3 135695248 135695281 -23904502 + AT_rich Low_complexity Low_complexity 1 33 0 3 1620 29 0 0 0 chr3 135695535 135695564 -23904219 + AT_rich Low_complexity Low_complexity 1 29 0 3 1620 575 365 97 11 chr3 135696270 135696630 -23903153 - L1ME1 LINE L1 -55 6124 5734 3 1620 255 358 0 12 chr3 135696635 135696717 -23903066 - ID4 SINE ID 0 83 3 3 1620 309 248 137 15 chr3 135696781 135696912 -23902871 - L1ME1 LINE L1 -504 5675 5529 3 1620 315 268 122 43 chr3 135696948 135697112 -23902671 - L1ME1 LINE L1 -706 5473 5297 3 1620 391 344 45 23 chr3 135697191 135697411 -23902372 - L1ME1 LINE L1 -1035 5111 4887 3 1620 534 82 0 0 chr3 135697415 135697500 -23902283 + (TCTTG)n Simple_repeat Simple_repeat 1 85 0 3 1620 1359 52 0 0 chr3 135697501 135697673 -23902110 + (TTCCC)n Simple_repeat Simple_repeat 5 176 0 3 1620 465 103 0 0 chr3 135697673 135697741 -23902042 + (TTTC)n Simple_repeat Simple_repeat 2 69 0 3 1620 280 317 18 6 chr3 135697810 135697978 -23901805 - L1M2 LINE L1 -1281 4862 4693 3 1620 194 0 39 0 chr3 135700123 135700149 -23899634 + (TTG)n Simple_repeat Simple_repeat 1 27 0 3 1620 573 373 39 33 chr3 135701274 135701609 -23898174 - LTR16B1 LTR ERVL -51 429 93 3 1620 408 342 78 10 chr3 135701711 135701903 -23897880 - MLT1A0 LTR MaLR -11 354 150 3 1620 261 189 0 0 chr3 135703156 135703209 -23896574 + L1MA5A LINE L1 5871 5923 -374 3 1620 487 181 32 0 chr3 135704122 135704216 -23895567 + Lx8 LINE L1 6379 6475 -998 3 1620 22 0 0 0 chr3 135704220 135704242 -23895541 + AT_rich Low_complexity Low_complexity 1 22 0 3 1620 332 292 0 0 chr3 135704938 135705027 -23894756 + PB1D10 SINE Alu 27 115 -2 3 1620 5649 82 43 18 chr3 135705171 135706824 -23892959 - L1VL2 LINE L1 -1789 1826 126 3 1620 1024 323 126 41 chr3 135706802 135707487 -23892296 + Lx8 LINE L1 6443 7185 -288 3 1620 854 268 61 85 chr3 135709395 135709758 -23890025 - ORR1E LTR MaLR -5 354 1 3 1620 280 308 102 48 chr3 135710301 135710468 -23889315 - MLT1B LTR MaLR -244 223 48 3 1620 1012 210 31 0 chr3 135710798 135710993 -23888790 + URR1A DNA MER1_type 2 202 -24 3 1620 207 88 0 0 chr3 135712376 135712410 -23887373 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 3 1620 3651 93 60 4 chr3 135714795 135715325 -23884458 - L1_Mus4 LINE L1 -6 6630 6071 3 1620 228 167 0 0 chr3 135717840 135717888 -23881895 + (TA)n Simple_repeat Simple_repeat 2 49 0 3 1620 253 376 74 18 chr3 135718095 135718312 -23881471 + Charlie20a DNA Charlie 216 444 -363 3 1620 589 291 58 31 chr3 135719574 135719996 -23879787 + L1_Mur3 LINE L1 2091 2546 -3594 3 1620 226 242 112 73 chr3 135720786 135720964 -23878819 - MLT1F-int LTR MaLR -898 591 407 3 1620 632 188 24 48 chr3 135721018 135721186 -23878597 - RMER10B LTR ERVL -46 352 189 3 1620 207 0 0 0 chr3 135721296 135721319 -23878464 + (T)n Simple_repeat Simple_repeat 1 23 0 3 1620 361 302 127 47 chr3 135721601 135721900 -23877883 - L1MC4a LINE L1 -1115 6767 6445 3 1620 348 369 75 11 chr3 135722689 135722955 -23876828 - L1M4b LINE L1 -3735 3271 2989 3 1620 472 257 68 79 chr3 135723114 135723304 -23876479 - B3A SINE B2 -1 197 10 3 1620 392 353 71 23 chr3 135723546 135724040 -23875743 - L1M4b LINE L1 -4474 2628 2049 3 1620 23 0 0 0 chr3 135724103 135724126 -23875657 + AT_rich Low_complexity Low_complexity 1 23 0 3 1620 939 18 0 0 chr3 135724674 135724783 -23875000 + (TC)n Simple_repeat Simple_repeat 2 110 0 3 1620 23 54 0 0 chr3 135725387 135725424 -23874359 + AT_rich Low_complexity Low_complexity 1 37 0 3 1620 6051 38 1 0 chr3 135725425 135726144 -23873639 - L1Md_T LINE L1 0 6582 5863 3 1620 239 318 184 17 chr3 135727295 135727474 -23872309 - MIRc SINE MIR -49 219 11 3 1620 326 324 0 54 chr3 135729606 135729717 -23870066 - PB1D10 SINE Alu 0 117 13 3 1620 252 0 0 0 chr3 135729848 135729876 -23869907 + (TG)n Simple_repeat Simple_repeat 1 28 0 3 1620 504 0 0 0 chr3 135729876 135729931 -23869852 + (GA)n Simple_repeat Simple_repeat 1 56 0 3 1620 307 259 128 16 chr3 135730634 135730822 -23868961 + L1MA5 LINE L1 4450 4658 -1485 3 1620 432 275 128 43 chr3 135730838 135731229 -23868554 + L1MA5 LINE L1 5858 6281 -19 3 1620 200 184 0 0 chr3 135731691 135731729 -23868054 + G-rich Low_complexity Low_complexity 1 38 0 3 1620 250 300 12 59 chr3 135732842 135732927 -23866856 + RSINE1 SINE B4 2 82 -83 3 1620 246 200 9 87 chr3 135733105 135733220 -23866563 - RMER17A2 LTR ERVK -539 367 262 3 1620 272 306 27 9 chr3 135734160 135734272 -23865511 + CT-rich Low_complexity Low_complexity 2 115 0 3 1620 672 291 82 49 chr3 135734299 135734566 -23865217 - B4A SINE B4 -14 278 3 3 1620 22 0 0 0 chr3 135735387 135735409 -23864374 + AT_rich Low_complexity Low_complexity 1 22 0 3 1620 1733 130 7 3 chr3 135735422 135735716 -23864067 - Lx5 LINE L1 -1064 5986 5692 3 1620 456 286 64 34 chr3 135735726 135735961 -23863822 + Lx5 LINE L1 5989 6230 -820 3 1620 3212 185 9 18 chr3 135735962 135736535 -23863248 + RLTR20D LTR ERVK 1 568 0 3 1620 3226 230 31 8 chr3 135736535 135737238 -23862545 + Lx5 LINE L1 6226 6944 -106 3 1620 32 43 0 0 chr3 135737374 135737420 -23862363 + AT_rich Low_complexity Low_complexity 1 46 0 3 1620 23 0 0 0 chr3 135737607 135737630 -23862153 + AT_rich Low_complexity Low_complexity 1 23 0 3 1620 299 241 38 12 chr3 135737733 135737813 -23861970 + CT-rich Low_complexity Low_complexity 4 85 0 3 1620 725 258 54 129 chr3 135737889 135738299 -23861484 + MTE2a LTR MaLR 1 379 0 3 1620 6962 62 0 0 chr3 135738513 135739387 -23860396 + L1Md_T LINE L1 5709 6582 0 3 1620 21 0 0 0 chr3 135739887 135739908 -23859875 + AT_rich Low_complexity Low_complexity 1 21 0 3 1620 413 265 141 32 chr3 135742065 135742340 -23857443 + MTEb LTR MaLR 13 379 0 3 1620 25 0 0 0 chr3 135742378 135742403 -23857380 + AT_rich Low_complexity Low_complexity 1 25 0 3 1620 207 0 0 0 chr3 135742639 135742662 -23857121 + (T)n Simple_repeat Simple_repeat 1 23 0 3 1620 311 346 36 65 chr3 135743048 135743187 -23856596 - ORR1E LTR MaLR -171 188 54 3 1620 3143 287 162 22 chr3 135743238 135744548 -23855235 - ORR1E-int LTR MaLR -82 1498 6 3 1620 421 304 128 79 chr3 135744555 135744859 -23854924 - ORR1E LTR MaLR 0 359 41 3 1620 327 25 0 0 chr3 135745264 135745304 -23854479 + (TG)n Simple_repeat Simple_repeat 2 41 0 3 1620 240 337 67 56 chr3 135746989 135747168 -23852615 - MIR3 SINE MIR -8 200 20 3 1620 306 73 0 0 chr3 135751430 135751471 -23848312 + (TG)n Simple_repeat Simple_repeat 1 41 0 3 1620 470 348 30 65 chr3 135751543 135751743 -23848040 - MER20 DNA MER1_type 0 219 27 3 1620 381 22 0 0 chr3 135752496 135752542 -23847241 + (CA)n Simple_repeat Simple_repeat 2 47 0 3 1620 199 304 0 28 chr3 135753703 135753774 -23846009 + MIRb SINE MIR 118 186 -82 3 1620 240 353 106 0 chr3 135754251 135754336 -23845447 - B4A SINE B4 -172 120 27 3 1620 21 71 0 0 chr3 135754474 135754516 -23845267 + AT_rich Low_complexity Low_complexity 1 42 0 3 1620 2564 274 121 20 chr3 135754710 135755773 -23844010 + Lx8 LINE L1 6182 7352 -121 3 1620 955 284 0 0 chr3 135756012 135756206 -23843577 + B3 SINE B2 13 206 -10 3 1620 201 300 14 0 chr3 135756421 135756491 -23843292 + CT-rich Low_complexity Low_complexity 5 75 0 3 1620 198 0 0 0 chr3 135757507 135757529 -23842254 + (T)n Simple_repeat Simple_repeat 1 22 0 3 1620 7662 90 56 9 chr3 135758075 135759235 -23840548 + Lx3_Mus LINE L1 5784 6997 -12 4 1620 341 329 81 37 chr3 135759607 135759768 -23840015 + B3A SINE B2 27 194 -4 4 1620 6826 127 20 58 chr3 135759930 135760470 -23839313 + L1_Mus2 LINE L1 4874 5426 -1140 4 1620 832 70 12 10 chr3 135760470 135760605 -23839178 + B1_Mm SINE Alu 17 147 0 4 1620 6826 127 20 58 chr3 135760605 135761715 -23838068 + L1_Mus2 LINE L1 5427 6564 -2 4 1620 21 36 0 0 chr3 135761811 135761839 -23837944 + AT_rich Low_complexity Low_complexity 1 28 0 4 1620 23 0 0 0 chr3 135761854 135761877 -23837906 + AT_rich Low_complexity Low_complexity 1 23 0 4 1620 21 36 0 0 chr3 135762094 135762122 -23837661 + AT_rich Low_complexity Low_complexity 1 28 0 4 1620 222 333 29 0 chr3 135762193 135762262 -23837521 + L2b LINE L2 3298 3368 -7 4 1620 907 235 34 0 chr3 135762412 135762616 -23837167 - B3 SINE B2 -5 211 1 4 1620 24 53 0 0 chr3 135763008 135763046 -23836737 + AT_rich Low_complexity Low_complexity 1 38 0 4 1620 180 171 60 12 chr3 135764496 135764579 -23835204 + (TG)n Simple_repeat Simple_repeat 2 88 0 4 1620 417 101 61 0 chr3 135764648 135764747 -23835036 + (TG)n Simple_repeat Simple_repeat 1 105 0 4 1620 222 37 0 0 chr3 135765695 135765722 -23834061 + (CAAAA)n Simple_repeat Simple_repeat 3 29 0 4 1620 398 337 25 35 chr3 135765869 135766072 -23833711 - L2 LINE L2 -731 2688 2488 4 1620 1105 108 0 11 chr3 135766127 135766305 -23833478 + (GGA)n Simple_repeat Simple_repeat 1 176 0 4 1620 270 0 0 0 chr3 135766489 135766519 -23833264 + (A)n Simple_repeat Simple_repeat 1 30 0 4 1620 426 69 0 0 chr3 135767368 135767426 -23832357 + (TTTA)n Simple_repeat Simple_repeat 1 58 0 4 1620 232 254 14 29 chr3 135767428 135767497 -23832286 - ID4_ SINE ID -11 72 5 4 1620 27 29 0 0 chr3 135769050 135769084 -23830699 + AT_rich Low_complexity Low_complexity 1 34 0 4 1620 273 214 14 14 chr3 135769126 135769197 -23830586 + L1_Mur3 LINE L1 2490 2560 -3320 4 1620 298 317 122 29 chr3 135771152 135771357 -23828426 + MIRb SINE MIR 45 268 0 4 1620 1281 135 5 9 chr3 135771541 135771758 -23828025 + Lx LINE L1 6437 6652 -2 4 1620 383 289 43 31 chr3 135774755 135774916 -23824867 - MIR SINE MIR -25 237 75 4 1620 459 0 0 0 chr3 135775616 135775667 -23824116 + (CA)n Simple_repeat Simple_repeat 2 52 0 4 1620 337 297 34 74 chr3 135776199 135776348 -23823435 + B1F SINE Alu 7 149 0 4 1620 510 204 18 23 chr3 135776459 135776630 -23823153 + GA-rich Low_complexity Low_complexity 2 171 0 4 1620 914 145 0 6 chr3 135776659 135776826 -23822957 + GA-rich Low_complexity Low_complexity 2 167 0 4 1620 224 271 0 116 chr3 135778721 135778842 -23820941 + MIR SINE MIR 101 207 -55 4 1620 398 298 119 10 chr3 135780102 135780295 -23819488 - L2a LINE L2 -1 3425 3212 4 1620 25 51 0 0 chr3 135780355 135780394 -23819389 + AT_rich Low_complexity Low_complexity 1 39 0 4 1620 569 357 121 40 chr3 135780435 135780914 -23818869 + MLT1G1 LTR MaLR 37 554 -25 4 1620 2101 135 7 85 chr3 135781187 135781633 -23818150 + IAPLTR2a LTR ERVK 1 411 0 4 1620 347 127 0 0 chr3 135781635 135781690 -23818093 + IAPEz-int LTR ERVK 3 57 -1930 4 1620 4171 56 68 23 chr3 135781671 135782289 -23817494 + IAPEz-int LTR ERVK 17 662 -5819 4 1620 424 38 0 0 chr3 135782289 135782342 -23817441 + IAPEz-int LTR ERVK 1359 1411 -5070 4 1620 1716 123 4 4 chr3 135782341 135782603 -23817180 + IAPEz-int LTR ERVK 2236 2497 -5183 4 1620 886 73 24 0 chr3 135782600 135782723 -23817060 + IAPEz-int LTR ERVK 4785 4910 -2770 4 1620 19962 16 2 2 chr3 135782725 135785085 -23814698 + IAPEz-int LTR ERVK 4123 6481 0 4 1620 2257 132 63 59 chr3 135785085 135785558 -23814225 + IAPLTR2_Mm LTR ERVK 1 475 0 4 1620 216 0 0 0 chr3 135785595 135785619 -23814164 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 4 1620 1589 260 71 71 chr3 135785637 135786465 -23813318 + L1_Rod LINE L1 3798 4625 -1222 4 1620 7245 86 24 14 chr3 135786563 135788120 -23811663 - L1VL2 LINE L1 -1586 2029 452 4 1620 223 320 79 39 chr3 135788389 135788516 -23811267 - MIR SINE MIR -122 140 9 4 1620 195 42 0 0 chr3 135789180 135789204 -23810579 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 4 1620 1165 275 15 102 chr3 135789491 135789892 -23809891 + MTEa LTR MaLR 1 366 -13 4 1620 212 0 36 0 chr3 135789919 135789947 -23809836 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 4 1621 230 288 0 0 chr3 135790743 135790809 -23808974 + L1M5 LINE L1 4096 4161 -1985 4 1621 24 0 0 0 chr3 135790858 135790882 -23808901 + AT_rich Low_complexity Low_complexity 1 24 0 4 1621 242 331 71 49 chr3 135790900 135791084 -23808699 + MLT1D LTR MaLR 176 363 -142 4 1621 359 270 50 10 chr3 135791214 135791358 -23808425 + L1MB1 LINE L1 5326 5474 -694 4 1621 304 200 318 0 chr3 135791483 135791593 -23808190 - B3 SINE B2 0 216 72 4 1621 656 270 80 19 chr3 135791632 135791956 -23807827 + L1MB1 LINE L1 5678 6021 -168 4 1621 3063 66 2 8 chr3 135792359 135792757 -23807026 + MTA_Mm LTR MaLR 1 396 0 4 1621 23 68 0 0 chr3 135793175 135793219 -23806564 + AT_rich Low_complexity Low_complexity 1 44 0 4 1621 1345 199 79 87 chr3 135794376 135794535 -23805248 + ORR1C1 LTR MaLR 1 163 -215 4 1621 540 0 0 0 chr3 135794535 135794595 -23805188 + (TC)n Simple_repeat Simple_repeat 1 60 0 4 1621 1345 199 79 87 chr3 135794595 135794814 -23804969 + ORR1C1 LTR MaLR 164 375 -3 4 1621 974 118 6 0 chr3 135795401 135795571 -23804212 + (TC)n Simple_repeat Simple_repeat 2 172 0 4 1621 180 179 0 0 chr3 135796820 135796859 -23802924 + A-rich Low_complexity Low_complexity 2 40 0 4 1621 220 222 78 65 chr3 135797424 135797501 -23802282 + MIRb SINE MIR 18 95 -173 4 1621 223 333 137 0 chr3 135797704 135797806 -23801977 - MIR SINE MIR -82 180 65 4 1621 4397 30 11 2 chr3 135798387 135798916 -23800867 + L1Md_F3 LINE L1 6051 6584 0 4 1621 22 0 0 0 chr3 135799448 135799470 -23800313 + AT_rich Low_complexity Low_complexity 1 22 0 4 1621 23 33 0 0 chr3 135799492 135799522 -23800261 + AT_rich Low_complexity Low_complexity 1 30 0 4 1621 957 264 21 30 chr3 135800367 135800800 -23798983 - Lx7 LINE L1 -1662 5982 5587 4 1621 240 111 0 0 chr3 135800962 135800998 -23798785 + (CA)n Simple_repeat Simple_repeat 1 36 0 4 1621 361 324 28 14 chr3 135801117 135801261 -23798522 + Tigger5 DNA MER2_type 1 146 -2260 4 1621 460 329 14 0 chr3 135802560 135802703 -23797080 + MER5B DNA MER1_type 5 149 -29 4 1621 638 270 111 0 chr3 135804279 135804468 -23795315 - B3 SINE B2 -6 210 1 4 1621 2262 91 3 6 chr3 135804525 135804845 -23794938 - L1_Mus4 LINE L1 -1 6635 6317 4 1621 229 316 32 34 chr3 135804937 135805084 -23794699 + MIR SINE MIR 37 179 -89 4 1621 204 318 24 0 chr3 135805616 135805701 -23794082 - MIRb SINE MIR -68 200 114 4 1621 216 159 45 0 chr3 135805927 135805971 -23793812 + CT-rich Low_complexity Low_complexity 2 47 0 4 1621 1014 121 0 0 chr3 135805971 135806128 -23793655 + (TCCC)n Simple_repeat Simple_repeat 4 160 0 4 1621 385 316 83 51 chr3 135808100 135808317 -23791466 - MIR SINE MIR -32 230 7 4 1621 473 94 0 0 chr3 135808411 135808475 -23791308 - B1_Mus1 SINE Alu -83 65 2 4 1621 22 0 0 0 chr3 135808835 135808857 -23790926 + AT_rich Low_complexity Low_complexity 1 22 0 4 1621 1301 82 0 32 chr3 135809552 135809742 -23790041 + L1_Mus1 LINE L1 6384 6567 0 4 1621 234 255 116 11 chr3 135810206 135810301 -23789482 + IAPLTR2a LTR ERVK 145 249 -162 4 1621 237 281 24 24 chr3 135810401 135810485 -23789298 + MTE2a LTR MaLR 294 377 -2 4 1621 558 0 0 0 chr3 135811424 135811486 -23788297 + (TCTA)n Simple_repeat Simple_repeat 1 62 0 4 1621 3894 91 16 5 chr3 135811863 135812414 -23787369 + Lx3_Mus LINE L1 6453 7009 0 4 1621 356 299 135 15 chr3 135815640 135815840 -23783943 - MIR SINE MIR -27 235 12 4 1621 357 221 0 25 chr3 135816366 135816445 -23783338 - Lx9 LINE L1 -436 7208 7132 4 1621 365 16 48 16 chr3 135816542 135816605 -23783178 + (TCTA)n Simple_repeat Simple_repeat 2 66 0 4 1621 777 315 11 0 chr3 135816637 135816818 -23782965 - B3 SINE B2 -27 189 7 4 1621 1096 246 56 4 chr3 135816931 135817180 -23782603 + MTD LTR MaLR 13 274 -145 4 1621 321 124 51 10 chr3 135817281 135817379 -23782404 + (TA)n Simple_repeat Simple_repeat 1 102 0 4 1621 407 68 17 0 chr3 135817386 135817445 -23782338 + (TTTC)n Simple_repeat Simple_repeat 1 60 0 4 1621 1338 83 0 27 chr3 135819060 135819245 -23780538 + B2_Mm2 SINE B2 2 181 -14 4 1621 221 306 81 43 chr3 135819485 135819625 -23780158 + MIR SINE MIR 116 267 -1 4 1621 676 158 0 12 chr3 135820146 135820319 -23779464 + (CAA)n Simple_repeat Simple_repeat 2 172 0 4 1621 343 300 48 32 chr3 135820378 135820389 -23779394 - ID_B1 SINE B4 -20 204 83 4 1621 618 184 28 0 chr3 135820389 135820498 -23779285 - B1_Mus1 SINE Alu -36 112 1 4 1621 252 133 0 48 chr3 135820572 135820635 -23779148 + GA-rich Low_complexity Low_complexity 2 61 0 4 1621 24 0 0 0 chr3 135820715 135820739 -23779044 + AT_rich Low_complexity Low_complexity 1 24 0 4 1621 21 57 0 0 chr3 135821794 135821829 -23777954 + AT_rich Low_complexity Low_complexity 1 35 0 4 1621 183 227 182 26 chr3 135822139 135822216 -23777567 - L3 LINE CR1 -3379 1110 1022 4 1621 183 232 0 0 chr3 135822982 135823038 -23776745 + GA-rich Low_complexity Low_complexity 3 58 0 4 1621 217 291 16 86 chr3 135823360 135823435 -23776348 + RSINE1 SINE B4 12 86 -79 4 1621 1638 201 39 6 chr3 135823435 135823790 -23775993 + ORR1B2 LTR MaLR 1 367 0 4 1621 217 291 16 86 chr3 135823790 135823842 -23775941 + RSINE1 SINE B4 87 130 -35 4 1621 3788 58 0 0 chr3 135824685 135825151 -23774632 - L1_Mus1 LINE L1 0 6567 6102 4 1621 1151 244 97 49 chr3 135826016 135826347 -23773436 + MTD LTR MaLR 18 371 -48 4 1621 3157 73 7 0 chr3 135826347 135826759 -23773024 - L1_Mus3 LINE L1 -4 6634 6220 4 1621 1151 244 97 49 chr3 135826759 135826797 -23772986 + MTD LTR MaLR 372 405 -14 4 1621 377 39 20 0 chr3 135828905 135828956 -23770827 + (GA)n Simple_repeat Simple_repeat 2 53 0 4 1621 334 297 49 35 chr3 135829025 135829168 -23770615 - MLT1A0 LTR MaLR 0 365 221 4 1621 268 348 62 0 chr3 135829234 135829346 -23770437 - MLT1A0 LTR MaLR -269 139 21 4 1621 252 0 0 0 chr3 135830131 135830159 -23769624 + (A)n Simple_repeat Simple_repeat 1 28 0 4 1621 36 40 0 0 chr3 135830499 135830549 -23769234 + AT_rich Low_complexity Low_complexity 1 50 0 4 1621 273 337 20 60 chr3 135830595 135830794 -23768989 - Lx8 LINE L1 -150 7323 7133 4 1621 29 78 0 0 chr3 135831383 135831447 -23768336 + AT_rich Low_complexity Low_complexity 1 64 0 5 1621 424 308 42 68 chr3 135833132 135833449 -23766334 + MLT1C LTR MaLR 15 369 -98 5 1621 372 255 0 0 chr3 135833704 135833806 -23765977 + (TA)n Simple_repeat Simple_repeat 2 103 0 5 1621 409 295 72 0 chr3 135834741 135834880 -23764903 - Lx8 LINE L1 -144 7329 7181 5 1621 22 0 0 0 chr3 135835537 135835559 -23764224 + AT_rich Low_complexity Low_complexity 1 22 0 5 1621 369 0 0 0 chr3 135835742 135835783 -23764000 + (CA)n Simple_repeat Simple_repeat 2 42 0 5 1621 32 67 0 0 chr3 135836138 135836198 -23763585 + AT_rich Low_complexity Low_complexity 1 60 0 5 1621 245 237 156 42 chr3 135836362 135836529 -23763254 - L1MD3 LINE L1 -269 7726 7541 5 1621 2016 117 12 15 chr3 135836742 135837080 -23762703 + IAPLTR1a_Mm LTR ERVK 1 337 0 5 1621 52520 30 9 2 chr3 135837080 135843505 -23756278 + IAPEz-int LTR ERVK 8 6478 -3 5 1621 2016 117 12 15 chr3 135843509 135843847 -23755936 + IAPLTR1a_Mm LTR ERVK 1 337 0 5 1621 223 26 24 49 chr3 135844090 135844131 -23755652 + (CAAAA)n Simple_repeat Simple_repeat 1 40 0 5 1621 461 351 31 26 chr3 135844176 135844404 -23755379 + MER96B DNA hAT 2 230 -187 5 1621 451 122 22 0 chr3 135845763 135845853 -23753930 + (CA)n Simple_repeat Simple_repeat 2 93 0 5 1621 207 171 0 0 chr3 135846258 135846293 -23753490 + (TG)n Simple_repeat Simple_repeat 2 36 0 5 1621 185 348 44 11 chr3 135847299 135847389 -23752394 + MIR SINE MIR 160 252 -10 5 1621 293 250 0 0 chr3 135847431 135847499 -23752284 + (TG)n Simple_repeat Simple_repeat 2 69 0 5 1621 426 165 0 0 chr3 135847601 135847680 -23752103 + CT-rich Low_complexity Low_complexity 1 79 0 5 1621 23 0 0 0 chr3 135848244 135848267 -23751516 + AT_rich Low_complexity Low_complexity 1 23 0 5 1621 858 78 21 14 chr3 135850077 135850220 -23749563 + L1_Mus3 LINE L1 6495 6638 0 5 1621 1069 82 0 0 chr3 135850234 135850368 -23749415 + B1_Mus1 SINE Alu 2 135 -13 5 1621 306 53 35 17 chr3 135850369 135850427 -23749356 + (CAAA)n Simple_repeat Simple_repeat 2 60 0 5 1621 350 274 39 19 chr3 135850611 135850715 -23749068 + PB1D10 SINE Alu 12 117 0 5 1621 237 299 45 0 chr3 135850733 135850800 -23748983 - MTEa LTR MaLR -235 144 75 5 1621 821 215 125 0 chr3 135851314 135851514 -23748269 - URR1A DNA MER1_type 0 226 2 5 1621 227 79 26 0 chr3 135851730 135851768 -23748015 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 5 1621 304 319 14 0 chr3 135854064 135854136 -23745647 - ID4_ SINE ID -3 80 8 5 1621 180 111 0 0 chr3 135854173 135854200 -23745583 + (CAA)n Simple_repeat Simple_repeat 2 28 0 5 1621 495 48 0 0 chr3 135855928 135855990 -23743793 + (TG)n Simple_repeat Simple_repeat 2 63 0 5 1621 336 48 0 0 chr3 135856529 135856571 -23743212 + (TTTA)n Simple_repeat Simple_repeat 2 43 0 5 1621 237 218 0 0 chr3 135857576 135857631 -23742152 + T-rich Low_complexity Low_complexity 4 58 0 5 1621 532 317 0 0 chr3 135857687 135857810 -23741973 + RSINE1 SINE B4 14 136 -29 5 1621 318 26 0 0 chr3 135857837 135857876 -23741907 + (CA)n Simple_repeat Simple_repeat 1 39 0 5 1621 269 214 10 30 chr3 135859030 135859131 -23740652 + (CATATA)n Simple_repeat Simple_repeat 6 104 0 5 1621 377 20 20 0 chr3 135859131 135859181 -23740602 + (TCTA)n Simple_repeat Simple_repeat 4 54 0 5 1621 777 73 0 0 chr3 135859294 135859403 -23740380 + (TC)n Simple_repeat Simple_repeat 1 109 0 5 1621 339 257 56 49 chr3 135859527 135859670 -23740113 - Lx9 LINE L1 -425 7219 7076 5 1621 320 381 29 18 chr3 135860215 135860386 -23739397 - MLT2B4 LTR ERVL -263 293 121 5 1621 825 117 25 38 chr3 135860387 135860547 -23739236 + Lx3_Mus LINE L1 6847 7004 -5 5 1621 402 21 0 0 chr3 135860582 135860629 -23739154 + (TC)n Simple_repeat Simple_repeat 2 48 0 5 1621 285 29 0 0 chr3 135860629 135860662 -23739121 + (TG)n Simple_repeat Simple_repeat 1 34 0 5 1621 504 45 0 0 chr3 135860662 135860728 -23739055 + (GA)n Simple_repeat Simple_repeat 1 67 0 5 1621 27 29 0 0 chr3 135861139 135861173 -23738610 + AT_rich Low_complexity Low_complexity 1 34 0 5 1621 351 0 0 0 chr3 135861646 135861685 -23738098 + (TG)n Simple_repeat Simple_repeat 2 40 0 5 1621 549 0 0 0 chr3 135862619 135862680 -23737103 + (TC)n Simple_repeat Simple_repeat 1 61 0 5 1621 198 0 0 0 chr3 135862680 135862701 -23737082 + (CA)n Simple_repeat Simple_repeat 1 22 0 5 1621 260 65 0 42 chr3 135862709 135862757 -23737026 + (CAGAGA)n Simple_repeat Simple_repeat 2 47 0 5 1621 325 62 88 0 chr3 135863272 135863352 -23736431 + (TTTTG)n Simple_repeat Simple_repeat 3 89 0 5 1621 2336 189 10 7 chr3 135863359 135863769 -23736014 + MTC LTR MaLR 3 413 -8 5 1621 189 0 0 0 chr3 135864066 135864087 -23735696 + (CAA)n Simple_repeat Simple_repeat 1 21 0 5 1621 599 0 14 0 chr3 135864359 135864430 -23735353 + (TC)n Simple_repeat Simple_repeat 2 73 0 5 1621 890 92 12 124 chr3 135864432 135864593 -23735190 - B1_Mur3 SINE Alu -6 143 1 5 1621 14822 11 1 0 chr3 135864699 135867162 -23732621 - L1Md_A LINE L1 0 6582 4117 5 1621 6714 10 2 0 chr3 135867160 135867976 -23731807 + L1_Mm LINE L1 3079 3896 -1987 5 1621 242 261 133 18 chr3 135867996 135868109 -23731674 + LTR73 LTR ERV1 184 309 -263 5 1621 371 174 0 11 chr3 135868857 135868944 -23730839 + (TA)n Simple_repeat Simple_repeat 2 87 0 5 1621 1989 182 14 53 chr3 135869086 135869522 -23730261 + MTC LTR MaLR 3 421 0 5 1621 3347 58 2 7 chr3 135870245 135870679 -23729104 - L1Md_F2 LINE L1 -1 6581 6150 5 1621 365 41 0 0 chr3 135870680 135870729 -23729054 + L1Md_T LINE L1 6103 6151 -431 5 1621 301 225 259 7 chr3 135871695 135871834 -23727949 - Lx8 LINE L1 -17 7456 7283 5 1621 694 303 27 102 chr3 135871943 135872277 -23727506 + MTE2a LTR MaLR 69 377 -2 5 1621 4086 152 8 31 chr3 135872401 135873162 -23726621 - Lx2 LINE L1 -503 6494 5752 5 1621 2621 175 60 10 chr3 135873162 135873648 -23726135 + Lx2B LINE L1 6474 6986 -14 5 1621 303 28 0 0 chr3 135873648 135873684 -23726099 + (TAA)n Simple_repeat Simple_repeat 1 36 0 5 1621 408 55 0 0 chr3 135874760 135874815 -23724968 + (CAAAA)n Simple_repeat Simple_repeat 1 55 0 5 1621 2176 210 12 5 chr3 135877919 135878325 -23721458 + MTC LTR MaLR 5 413 -8 5 1621 195 42 0 0 chr3 135879135 135879159 -23720624 + (TCTG)n Simple_repeat Simple_repeat 4 27 0 5 1621 2582 152 11 2 chr3 135879159 135879593 -23720190 + BGLII_B LTR ERVK 4 441 0 5 1621 206 125 36 48 chr3 135879599 135879683 -23720100 + (TCTA)n Simple_repeat Simple_repeat 3 85 0 5 1621 483 100 0 0 chr3 135879709 135879779 -23720004 + (TCTA)n Simple_repeat Simple_repeat 4 73 0 5 1621 534 289 22 0 chr3 135879786 135879921 -23719862 - B1F2 SINE Alu -10 139 2 5 1621 1924 185 14 30 chr3 135880661 135881028 -23718755 - ORR1C1 LTR MaLR 0 378 18 5 1621 5520 125 15 6 chr3 135881342 135882186 -23717597 + Lx3C LINE L1 6117 6968 -8 5 1621 1545 254 134 50 chr3 135882255 135882505 -23717278 + Lx9 LINE L1 6852 7145 -499 5 1621 1873 158 3 6 chr3 135882505 135882817 -23716966 - RLTR10E LTR ERVK 0 311 1 5 1621 1545 254 134 50 chr3 135882817 135883283 -23716500 + Lx9 LINE L1 7146 7628 -16 5 1621 1094 166 38 34 chr3 135883285 135883522 -23716261 + Lx3B LINE L1 6733 6970 -3 5 1621 459 318 0 0 chr3 135883568 135883697 -23716086 + ID_B1 SINE B4 95 223 -1 5 1621 23 54 0 0 chr3 135883845 135883882 -23715901 + AT_rich Low_complexity Low_complexity 1 37 0 5 1621 289 388 74 5 chr3 135884582 135884771 -23715012 + MIR3 SINE MIR 3 204 -4 5 1621 387 239 0 64 chr3 135884829 135884923 -23714860 + B4A SINE B4 1 88 -204 5 1621 259 317 8 38 chr3 135884923 135884960 -23714823 + BC1_Mm scRNA scRNA 1 127 -25 5 1621 298 304 22 13 chr3 135885029 135885120 -23714663 + B4A SINE B4 97 192 -100 5 1621 208 121 0 0 chr3 135885141 135885174 -23714609 + (TC)n Simple_repeat Simple_repeat 2 34 0 5 1621 282 116 0 0 chr3 135885175 135885218 -23714565 + (TATG)n Simple_repeat Simple_repeat 4 46 0 5 1621 548 305 85 28 chr3 135885360 135885758 -23714025 + Lx9 LINE L1 6926 7346 -298 5 1621 247 317 24 0 chr3 135886683 135886765 -23713018 + RSINE1 SINE B4 75 158 -7 5 1621 3089 149 76 69 chr3 135886922 135887605 -23712178 + RMER6C LTR ERVK 3 690 0 5 1621 190 143 41 0 chr3 135887647 135887696 -23712087 + (TCTA)n Simple_repeat Simple_repeat 4 54 0 5 1621 732 109 38 6 chr3 135887712 135887869 -23711914 + (TCTA)n Simple_repeat Simple_repeat 4 165 0 5 1621 5740 137 20 26 chr3 135890526 135891523 -23708260 + Lx3A LINE L1 5989 6979 -2 5 1621 743 241 201 37 chr3 135891559 135892016 -23707767 + RMER4B LTR ERVK 47 578 -7 5 1621 27 0 0 0 chr3 135892722 135892749 -23707034 + AT_rich Low_complexity Low_complexity 1 27 0 5 1621 1278 208 191 6 chr3 135894375 135894700 -23705083 - MTD LTR MaLR -15 404 20 5 1621 185 176 148 56 chr3 135895920 135895974 -23703809 + L4 LINE RTE 1755 1813 -216 5 1621 379 346 69 38 chr3 135896621 135896780 -23703003 + RSINE1 SINE B4 2 165 0 5 1621 417 312 64 13 chr3 135897213 135897369 -23702414 + RSINE1 SINE B4 2 165 0 5 1621 469 216 138 0 chr3 135897721 135897837 -23701946 + Lx8 LINE L1 7257 7388 -85 5 1621 1131 288 120 10 chr3 135897981 135898374 -23701409 + Lx8 LINE L1 6804 7239 -234 5 1621 467 291 31 0 chr3 135898582 135898709 -23701074 + Lx8 LINE L1 6821 6951 -522 5 1621 237 102 286 0 chr3 135898717 135898766 -23701017 + MTC LTR MaLR 1 63 -358 5 1621 308 172 16 0 chr3 135898753 135898817 -23700966 + URR1B DNA MER1_type 160 224 -1 5 1621 204 97 0 0 chr3 135898832 135898863 -23700920 + (TC)n Simple_repeat Simple_repeat 2 32 0 5 1621 809 74 22 54 chr3 135898866 135899051 -23700732 + (TCTCTG)n Simple_repeat Simple_repeat 2 180 0 5 1621 190 367 90 60 chr3 135900761 135900961 -23698822 - L2b LINE L2 -213 3162 2957 5 1621 445 287 0 34 chr3 135901063 135901182 -23698601 - B4A SINE B4 -4 288 174 5 1621 36 0 0 0 chr3 135901189 135901225 -23698558 + AT_rich Low_complexity Low_complexity 1 36 0 6 1621 197 338 0 15 chr3 135901632 135901698 -23698085 - MIR3 SINE MIR -4 204 140 6 1621 602 128 0 11 chr3 135905223 135905318 -23694465 - B1_Mur3 SINE Alu -21 128 35 6 1621 292 152 109 89 chr3 135905237 135905338 -23694445 - MT2B LTR ERVL -337 264 162 6 1621 495 105 48 0 chr3 135906235 135906359 -23693424 + CT-rich Low_complexity Low_complexity 3 132 0 6 1621 240 212 0 0 chr3 135906365 135906431 -23693352 + (TCCA)n Simple_repeat Simple_repeat 3 68 0 6 1621 399 284 193 21 chr3 135907806 135908337 -23691446 - L1MA6 LINE L1 -351 5961 5322 6 1621 269 361 39 11 chr3 135908348 135908530 -23691253 - Lx7 LINE L1 -20 7676 7490 6 1621 342 0 0 0 chr3 135908538 135908576 -23691207 + (CA)n Simple_repeat Simple_repeat 2 39 0 6 1621 474 199 71 8 chr3 135908593 135908720 -23691063 - L1MA6 LINE L1 -852 5291 5157 6 1621 396 312 84 21 chr3 135908767 135908957 -23690826 - L1MA6 LINE L1 -957 5186 4985 6 1621 642 197 0 0 chr3 135909208 135909340 -23690443 + (TA)n Simple_repeat Simple_repeat 2 133 0 6 1621 264 30 0 0 chr3 135909340 135909373 -23690410 + (GA)n Simple_repeat Simple_repeat 2 34 0 6 1621 456 332 15 35 chr3 135909717 135909914 -23689869 - B3A SINE B2 -2 196 4 6 1621 1186 48 0 0 chr3 135910837 135910982 -23688801 + B1_Mus2 SINE Alu 1 145 -2 6 1621 351 0 0 0 chr3 135911329 135911368 -23688415 + (TC)n Simple_repeat Simple_repeat 2 40 0 6 1621 360 0 0 0 chr3 135911368 135911407 -23688376 + (TG)n Simple_repeat Simple_repeat 1 40 0 6 1621 444 307 6 6 chr3 135911770 135912109 -23687674 + (CA)n Simple_repeat Simple_repeat 1 339 0 6 1621 209 83 0 27 chr3 135912107 135912144 -23687639 + (CATG)n Simple_repeat Simple_repeat 1 36 0 6 1621 445 308 104 30 chr3 135913107 135913271 -23686512 + MER45A DNA Tip100 3 178 0 6 1621 875 127 6 65 chr3 135913537 135913706 -23686077 - L1Md_F2 LINE L1 0 6582 6424 6 1621 406 314 116 63 chr3 135914786 135914993 -23684790 - MER20 DNA MER1_type 0 219 2 6 1621 929 227 61 6 chr3 135915289 135915540 -23684243 + Lx3C LINE L1 6716 6995 -5 6 1621 262 309 0 17 chr3 135917683 135917769 -23682014 - L2a LINE L2 -24 3402 3286 6 1621 641 226 19 82 chr3 135918404 135918563 -23681220 + B3A SINE B2 49 197 -1 6 1621 6489 114 15 8 chr3 135919121 135920382 -23679401 + L1_Mus3 LINE L1 4772 6043 -595 6 1621 2428 124 48 15 chr3 135920385 135920660 -23679123 + L1_Mus3 LINE L1 6243 6536 -118 6 1621 279 0 0 0 chr3 135920660 135920691 -23679092 + (TGGG)n Simple_repeat Simple_repeat 3 33 0 6 1621 2428 124 48 15 chr3 135920691 135920808 -23678975 + L1_Mus3 LINE L1 6537 6647 -7 6 1621 1195 193 5 0 chr3 135921277 135921500 -23678283 - URR1B DNA MER1_type 0 225 2 6 1622 6477 67 20 8 chr3 135921783 135922645 -23677138 + L1_Mus2 LINE L1 5695 6566 0 6 1622 348 307 68 4 chr3 135922938 135923089 -23676694 + ID_B1 SINE B4 14 198 -26 6 1622 844 64 0 39 chr3 135923591 135923721 -23676062 - L1_Mus2 LINE L1 0 6566 6442 6 1622 21 57 0 0 chr3 135923992 135924027 -23675756 + AT_rich Low_complexity Low_complexity 1 35 0 6 1622 621 353 134 0 chr3 135924491 135924783 -23675000 + MER2 DNA MER2_type 6 336 -9 6 1622 1714 159 3 106 chr3 135925401 135925759 -23674024 - ORR1A4 LTR MaLR -8 321 1 6 1622 574 37 25 0 chr3 135926425 135926506 -23673277 + (TCTA)n Simple_repeat Simple_repeat 4 86 0 6 1622 654 280 142 29 chr3 135926546 135926991 -23672792 - L1M5 LINE L1 -394 5785 5291 6 1622 2483 68 102 3 chr3 135927646 135927999 -23671784 + L1_Mus3 LINE L1 6244 6631 -7 6 1622 776 322 54 42 chr3 135928218 135928604 -23671179 + Charlie1a DNA MER1_type 489 879 -576 6 1622 373 277 85 0 chr3 135928723 135928864 -23670919 + Charlie1a DNA MER1_type 1113 1265 -190 6 1622 3182 73 5 7 chr3 135928883 135929310 -23670473 - L1_Mus1 LINE L1 0 6567 6142 6 1622 321 98 0 0 chr3 135929310 135929351 -23670432 + L1_Mus1 LINE L1 6134 6174 -393 6 1622 24 0 0 0 chr3 135929551 135929575 -23670208 + AT_rich Low_complexity Low_complexity 1 24 0 6 1622 532 287 23 92 chr3 135929596 135929769 -23670014 - RSINE1 SINE B4 0 165 5 6 1622 296 142 37 9 chr3 135930243 135930350 -23669433 + (CAAA)n Simple_repeat Simple_repeat 4 113 0 6 1622 216 273 0 0 chr3 135930478 135930533 -23669250 + (CATATA)n Simple_repeat Simple_repeat 6 60 0 6 1622 469 314 18 66 chr3 135930557 135930724 -23669059 - RSINE1 SINE B4 0 165 7 6 1622 182 118 29 0 chr3 135932283 135932317 -23667466 + (TTTTC)n Simple_repeat Simple_repeat 1 35 0 6 1622 713 242 27 0 chr3 135932932 135933081 -23666702 - MTD LTR MaLR 0 419 267 6 1622 339 262 39 70 chr3 135933122 135933143 -23666640 - CYRA11_Mm Unknown Y-chromosome -295 322 172 6 1622 715 187 0 7 chr3 135933143 135933278 -23666505 + URR1B DNA MER1_type 91 224 -1 6 1622 329 246 75 50 chr3 135933278 135933385 -23666398 - MTD LTR MaLR -311 110 1 6 1622 22 35 0 0 chr3 135934253 135934282 -23665501 + AT_rich Low_complexity Low_complexity 1 29 0 6 1622 300 340 70 6 chr3 135934318 135934475 -23665308 + L1M4 LINE L1 2667 2833 -3313 6 1622 22 0 0 0 chr3 135934893 135934915 -23664868 + AT_rich Low_complexity Low_complexity 1 22 0 6 1622 330 238 59 10 chr3 135935788 135935890 -23663893 + L1_Rod LINE L1 1476 1582 -4265 6 1622 860 283 63 3 chr3 135935996 135936358 -23663425 + L1_Rod LINE L1 925 1308 -6300 6 1622 213 39 0 0 chr3 135936358 135936384 -23663399 + (CAAAAA)n Simple_repeat Simple_repeat 3 28 0 6 1622 267 312 44 9 chr3 135936405 135936518 -23663265 + L1_Rod LINE L1 1318 1434 -4413 6 1622 432 259 9 9 chr3 135936577 135936690 -23663093 - Lx7 LINE L1 -375 7321 7209 6 1622 1942 286 111 75 chr3 135936699 135936935 -23662848 + L1_Rod LINE L1 1431 1735 -4145 6 1622 681 24 0 0 chr3 135936935 135937018 -23662765 + (TG)n Simple_repeat Simple_repeat 2 84 0 6 1622 3922 252 79 82 chr3 135937018 135937996 -23661787 + L1_Rod LINE L1 1736 2747 -3100 6 1622 1143 68 0 13 chr3 135937996 135938145 -23661638 - B1_Mus1 SINE Alu -1 147 1 6 1622 3922 252 79 82 chr3 135938145 135938971 -23660812 + L1_Rod LINE L1 2748 3564 -2283 6 1622 180 111 0 0 chr3 135938971 135938998 -23660785 + (TTA)n Simple_repeat Simple_repeat 2 28 0 6 1622 829 178 7 0 chr3 135938998 135939133 -23660650 - B1_Mur4 SINE Alu -14 136 1 6 1622 3922 259 85 81 chr3 135939133 135939363 -23660420 + L1_Rod LINE L1 3550 3784 -2096 6 1622 674 302 27 113 chr3 135939356 135939915 -23659868 + Lx9 LINE L1 7133 7643 -1 6 1622 373 214 241 55 chr3 135940734 135940971 -23658812 - Lx8 LINE L1 -9 7464 7184 6 1622 264 328 0 0 chr3 135941169 135941233 -23658550 + RSINE1 SINE B4 100 163 -2 6 1622 24 53 0 0 chr3 135941421 135941459 -23658324 + AT_rich Low_complexity Low_complexity 1 38 0 6 1622 3754 106 41 19 chr3 135941980 135942616 -23657167 - Lx3A LINE L1 -2363 3523 2874 6 1622 13463 136 32 35 chr3 135942565 135946026 -23653757 + Lx3A LINE L1 3521 6976 -5 6 1622 404 164 0 15 chr3 135946026 135946047 -23653736 + HAL1-3A_ME LINE L1 1954 1974 -884 6 1622 537 58 0 0 chr3 135946047 135946116 -23653667 + (TAGA)n Simple_repeat Simple_repeat 4 72 0 6 1622 404 164 0 15 chr3 135946116 135946162 -23653621 + HAL1-3A_ME LINE L1 1975 2020 -838 6 1622 908 187 105 21 chr3 135946565 135946756 -23653027 - B3 SINE B2 -7 209 3 6 1622 308 350 18 36 chr3 135947545 135947711 -23652072 + RSINE1 SINE B4 3 165 0 6 1622 30 45 0 0 chr3 135947711 135947755 -23652028 + AT_rich Low_complexity Low_complexity 1 44 0 6 1622 21 0 0 0 chr3 135948363 135948384 -23651399 + AT_rich Low_complexity Low_complexity 1 21 0 6 1622 2583 14 0 0 chr3 135948479 135948770 -23651013 + L1Md_T LINE L1 5296 5586 -297 6 1622 8469 31 0 0 chr3 135948770 135949766 -23650017 + L1Md_T LINE L1 5587 6582 0 6 1622 896 174 0 11 chr3 135949977 135950157 -23649626 + GA-rich Low_complexity Low_complexity 1 178 0 6 1622 270 0 0 0 chr3 135950157 135950187 -23649596 + (GA)n Simple_repeat Simple_repeat 1 30 0 6 1622 353 257 86 26 chr3 135950187 135950303 -23649480 - RSINE1 SINE B4 -40 125 3 6 1622 273 283 37 9 chr3 135950587 135950694 -23649089 + L1ME3B LINE L1 5785 5894 -346 6 1622 342 0 0 0 chr3 135950818 135950856 -23648927 + (TG)n Simple_repeat Simple_repeat 2 39 0 6 1622 2459 249 114 38 chr3 135950922 135951776 -23648007 + RCHARR1 DNA MER1_type 56 974 0 6 1622 4925 139 12 51 chr3 135952170 135953081 -23646702 - RLTR13A3 LTR ERVK 0 978 1 6 1622 476 223 76 41 chr3 135955541 135955686 -23644097 - RMER15 LTR ERVL -90 485 336 6 1622 749 299 57 24 chr3 135956490 135956788 -23642995 - RMER5 LTR ERV1 -10 524 217 6 1622 225 345 43 17 chr3 135956822 135956937 -23642846 + RSINE1 SINE B4 48 165 0 6 1622 608 128 0 86 chr3 135957001 135957198 -23642585 + (CA)n Simple_repeat Simple_repeat 1 180 0 6 1622 379 186 0 49 chr3 135957239 135957403 -23642380 + (CA)n Simple_repeat Simple_repeat 1 156 0 6 1622 568 145 25 25 chr3 135957417 135957580 -23642203 + (CA)n Simple_repeat Simple_repeat 1 163 0 6 1622 597 100 0 0 chr3 135957959 135958049 -23641734 + (TATG)n Simple_repeat Simple_repeat 2 91 0 6 1622 253 216 39 0 chr3 135958447 135958498 -23641285 - Cheshire DNA MER1_type -8 2412 2360 6 1622 210 308 0 0 chr3 135959011 135959063 -23640720 - B3 SINE B2 -164 52 1 6 1622 198 179 41 21 chr3 135959541 135959638 -23640145 + (TA)n Simple_repeat Simple_repeat 1 99 0 6 1622 250 263 14 156 chr3 135959884 135960096 -23639687 - Charlie7 DNA MER1_type -1466 1146 965 6 1622 506 282 17 0 chr3 135960566 135960683 -23639100 + RMER10B LTR ERVL 270 388 -10 6 1622 26 0 0 0 chr3 135961550 135961576 -23638207 + AT_rich Low_complexity Low_complexity 1 26 0 6 1622 23 25 0 24 chr3 135962096 135962117 -23637666 + AT_rich Low_complexity Low_complexity 1 21 0 6 1622 369 0 0 0 chr3 135962117 135962158 -23637625 + (CA)n Simple_repeat Simple_repeat 2 42 0 6 1622 23 25 0 24 chr3 135962158 135962177 -23637606 + AT_rich Low_complexity Low_complexity 1 19 0 6 1622 1634 71 5 0 chr3 135962664 135962888 -23636895 + L1Md_F2 LINE L1 6357 6581 -1 6 1622 834 64 0 0 chr3 135963010 135963119 -23636664 + (CAAAA)n Simple_repeat Simple_repeat 2 110 0 6 1622 1900 46 8 0 chr3 135963681 135963920 -23635863 - L1Md_F3 LINE L1 -1 6583 6343 6 1622 5679 168 45 30 chr3 135964152 135965090 -23634693 + L1_Mur2 LINE L1 4628 5563 -314 6 1622 5616 83 9 0 chr3 135965090 135965839 -23633944 + Lx3_Mus LINE L1 6241 6996 -13 6 1622 180 0 0 0 chr3 135965843 135965863 -23633920 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 6 1622 5679 168 45 30 chr3 135965863 135966070 -23633713 + L1_Mur2 LINE L1 5564 5796 -81 6 1622 326 291 35 42 chr3 135967126 135967242 -23632541 - B1F1 SINE Alu -7 110 6 6 1622 260 377 29 51 chr3 135967485 135967622 -23632161 + ID_B1 SINE B4 81 214 -10 6 1622 472 249 129 51 chr3 135967699 135967877 -23631906 + B3A SINE B2 2 193 -5 6 1622 22 94 0 0 chr3 135968129 135968193 -23631590 + AT_rich Low_complexity Low_complexity 1 64 0 7 1622 227 359 0 21 chr3 135968358 135968452 -23631331 + PB1D10 SINE Alu 19 110 -7 7 1622 216 97 0 0 chr3 135968755 135968786 -23630997 + (TA)n Simple_repeat Simple_repeat 1 31 0 7 1622 325 371 104 12 chr3 135969265 135969505 -23630278 - MLT1D LTR MaLR -100 405 144 7 1622 221 309 54 9 chr3 135970359 135970470 -23629313 + MIR SINE MIR 27 142 -66 7 1622 419 15 29 29 chr3 135970515 135970585 -23629198 + (TG)n Simple_repeat Simple_repeat 2 71 0 7 1622 246 321 37 9 chr3 135970896 135971003 -23628780 + L1MA4A LINE L1 5822 5931 -372 7 1622 382 167 12 12 chr3 135971189 135971274 -23628509 + (TA)n Simple_repeat Simple_repeat 1 85 0 7 1622 31 0 0 0 chr3 135971310 135971341 -23628442 + AT_rich Low_complexity Low_complexity 1 31 0 7 1622 353 273 40 20 chr3 135971387 135971488 -23628295 - RSINE1 SINE B4 -28 137 35 7 1622 240 341 12 12 chr3 135972423 135972506 -23627277 + ID4 SINE ID 1 83 0 7 1622 216 0 0 0 chr3 135972965 135972989 -23626794 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 7 1622 324 0 0 0 chr3 135974386 135974422 -23625361 + (TA)n Simple_repeat Simple_repeat 1 36 0 7 1622 356 55 18 0 chr3 135974422 135974477 -23625306 + (GA)n Simple_repeat Simple_repeat 1 56 0 7 1622 404 136 0 24 chr3 135974671 135974754 -23625029 - L1Md_F2 LINE L1 0 6582 6502 7 1622 22 56 0 0 chr3 135974925 135974961 -23624822 + AT_rich Low_complexity Low_complexity 1 36 0 7 1622 1845 42 51 0 chr3 135974969 135975206 -23624577 - L1_Mus1 LINE L1 0 6567 6319 7 1622 278 330 130 5 chr3 135976097 135976289 -23623494 - MER33 DNA MER1_type -108 216 1 7 1622 186 329 0 28 chr3 135976347 135976419 -23623364 + L4 LINE RTE 1298 1367 -662 7 1622 625 185 6 6 chr3 135976729 135976908 -23622875 + (CA)n Simple_repeat Simple_repeat 2 180 0 7 1622 242 234 0 15 chr3 135976911 135976976 -23622807 + (CATA)n Simple_repeat Simple_repeat 4 67 0 7 1622 600 226 4 0 chr3 135976977 135977218 -23622565 + (CA)n Simple_repeat Simple_repeat 1 242 0 7 1622 538 272 34 24 chr3 135977302 135977509 -23622274 + L1_Rod LINE L1 4804 5012 -835 7 1622 238 197 15 76 chr3 135977517 135977583 -23622200 + MTE2a LTR MaLR 269 330 -49 7 1622 805 296 114 23 chr3 135977871 135978214 -23621569 - MTD LTR MaLR -45 374 1 7 1622 737 251 11 48 chr3 135978247 135978515 -23621268 - Lx9 LINE L1 -8 7636 7379 7 1622 325 352 0 8 chr3 135978874 135978997 -23620786 + GA-rich Low_complexity Low_complexity 5 126 0 7 1622 30406 77 7 1 chr3 135979129 135983300 -23616483 + L1Md_F2 LINE L1 1392 5586 -297 7 1622 7232 81 18 1 chr3 135983301 135984278 -23615505 + L1Md_F2 LINE L1 5588 6581 -1 7 1622 453 276 88 88 chr3 135984541 135984700 -23615083 - RSINE1 SINE B4 0 165 7 7 1622 525 279 0 15 chr3 135984681 135984812 -23614971 - B1_Mur2 SINE Alu -11 138 10 7 1622 307 235 29 0 chr3 135985259 135985327 -23614456 - B1F SINE Alu -1 148 79 7 1622 236 317 131 16 chr3 135985263 135985385 -23614398 - ID_B1 SINE B4 -5 219 84 7 1622 234 218 25 13 chr3 135986154 135986233 -23613550 + T-rich Low_complexity Low_complexity 1 80 0 7 1622 420 193 24 0 chr3 135986234 135986317 -23613466 - B1_Mus2 SINE Alu -1 146 62 7 1622 3551 56 0 5 chr3 135987723 135988172 -23611611 + L1_Mus1 LINE L1 6119 6565 -2 7 1622 23 54 0 0 chr3 135988218 135988255 -23611528 + AT_rich Low_complexity Low_complexity 1 37 0 7 1622 362 92 15 0 chr3 135989637 135989702 -23610081 + Lx LINE L1 6585 6650 -4 7 1622 2966 41 0 19 chr3 135990169 135990545 -23609238 - L1Md_F2 LINE L1 -8 6574 6206 7 1622 2442 55 30 15 chr3 135990682 135991016 -23608767 - L1Md_F2 LINE L1 -14 6568 6230 7 1622 21 36 0 0 chr3 135991440 135991468 -23608315 + AT_rich Low_complexity Low_complexity 1 28 0 7 1622 274 320 112 0 chr3 135991468 135991593 -23608190 - Tigger7 DNA MER2_type -1 2490 2352 7 1622 184 30 61 0 chr3 135991731 135991764 -23608019 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 7 1622 370 313 95 58 chr3 135992841 135993082 -23606701 + MLT1D LTR MaLR 183 432 -73 7 1622 396 0 0 0 chr3 135993570 135993614 -23606169 + (CA)n Simple_repeat Simple_repeat 2 45 0 7 1622 378 0 0 0 chr3 135994227 135994269 -23605514 + (TG)n Simple_repeat Simple_repeat 2 43 0 7 1622 1169 49 0 0 chr3 135996284 135996426 -23603357 + B1_Mus1 SINE Alu 2 143 -5 7 1622 348 64 0 0 chr3 135997315 135997362 -23602421 + (CAGAGA)n Simple_repeat Simple_repeat 2 48 0 7 1622 351 0 0 0 chr3 135997803 135997842 -23601941 + (TAA)n Simple_repeat Simple_repeat 1 39 0 7 1622 363 295 115 44 chr3 135997980 135998232 -23601551 + L1MB7 LINE L1 5906 6175 -9 7 1622 1179 223 24 14 chr3 135998223 135998510 -23601273 + Lx9 LINE L1 7012 7301 -343 7 1622 4153 105 13 7 chr3 135998514 135999126 -23600657 + Lx2 LINE L1 6378 6993 -4 7 1622 489 359 49 35 chr3 135999353 135999639 -23600144 + B4A SINE B4 1 290 -2 7 1622 28 0 0 0 chr3 135999686 135999714 -23600069 + AT_rich Low_complexity Low_complexity 1 28 0 7 1622 472 324 6 56 chr3 135999736 135999896 -23599887 + RSINE1 SINE B4 14 165 0 7 1622 1345 251 138 31 chr3 136000823 136001255 -23598528 - RLTR40 LTR ERVK -55 762 289 1 1622 225 94 0 0 chr3 136001255 136001287 -23598496 + (CATA)n Simple_repeat Simple_repeat 1 32 0 2 1622 1345 251 138 31 chr3 136001287 136001433 -23598350 - RLTR40 LTR ERVK -529 288 123 1 1622 1331 227 63 3 chr3 136001452 136001753 -23598030 - MTC LTR MaLR -102 319 1 3 1622 281 216 53 74 chr3 136001753 136001844 -23597939 - RLTR40 LTR ERVK -693 124 36 1 1622 432 0 0 0 chr3 136001844 136001892 -23597891 + (TA)n Simple_repeat Simple_repeat 2 49 0 4 1622 898 306 21 21 chr3 136003021 136003311 -23596472 + B4A SINE B4 1 290 -2 5 1622 228 149 0 0 chr3 136003331 136003378 -23596405 + (CA)n Simple_repeat Simple_repeat 1 47 0 6 1622 351 0 0 0 chr3 136003378 136003417 -23596366 + (GA)n Simple_repeat Simple_repeat 2 40 0 7 1622 306 0 0 0 chr3 136003431 136003465 -23596318 + (CA)n Simple_repeat Simple_repeat 1 34 0 8 1622 1310 227 89 11 chr3 136003484 136003854 -23595929 - MTD LTR MaLR -3 416 18 9 1622 975 96 7 46 chr3 136003998 136004151 -23595632 - B1_Mus2 SINE Alu 0 147 1 1 1622 589 195 86 0 chr3 136004161 136004289 -23595494 - RMER1C Other Other -4 1338 1200 1 1622 345 174 0 0 chr3 136004290 136004359 -23595424 + GA-rich Low_complexity Low_complexity 6 74 0 1 1622 2290 246 37 5 chr3 136004359 136004927 -23594856 - RMER1C Other Other -120 1222 637 1 1622 766 264 35 20 chr3 136004952 136005149 -23594634 - B4A SINE B4 -67 225 26 1 1622 484 376 22 0 chr3 136005468 136005646 -23594137 + B3 SINE B2 6 187 -29 1 1622 1820 161 22 6 chr3 136006395 136006708 -23593075 + ORR1B1 LTR MaLR 1 318 -76 1 1622 285 146 21 0 chr3 136006831 136006879 -23592904 - ORR1B2 LTR MaLR 0 367 319 1 1622 1666 211 79 6 chr3 136006881 136007234 -23592549 + MTD LTR MaLR 41 419 0 1 1622 414 0 0 0 chr3 136007480 136007526 -23592257 + (CA)n Simple_repeat Simple_repeat 2 47 0 1 1622 257 159 22 22 chr3 136009073 136009118 -23590665 + 4.5SRNA scRNA scRNA 50 94 0 1 1622 23 0 0 0 chr3 136009959 136009982 -23589801 + AT_rich Low_complexity Low_complexity 1 23 0 2 1622 387 312 53 40 chr3 136010379 136010606 -23589177 + L1M5 LINE L1 3068 3297 -2849 2 1622 27 29 0 0 chr3 136010634 136010668 -23589115 + AT_rich Low_complexity Low_complexity 1 34 0 2 1622 423 0 0 0 chr3 136010951 136010998 -23588785 + (TA)n Simple_repeat Simple_repeat 1 47 0 2 1622 279 54 0 0 chr3 136011000 136011037 -23588746 + (TG)n Simple_repeat Simple_repeat 2 38 0 2 1622 482 223 43 7 chr3 136011476 136011616 -23588167 + L1MD LINE L1 2988 3132 -3014 2 1622 550 273 38 105 chr3 136011673 136012017 -23587766 + L1MD2 LINE L1 5752 6072 -287 2 1622 22 35 0 0 chr3 136012114 136012143 -23587640 + AT_rich Low_complexity Low_complexity 1 29 0 2 1622 1375 218 80 17 chr3 136012877 136013227 -23586556 - ORR1D1 LTR MaLR 0 374 3 2 1622 23 0 0 0 chr3 136014018 136014041 -23585742 + AT_rich Low_complexity Low_complexity 1 23 0 2 1622 21 0 0 0 chr3 136014377 136014398 -23585385 + AT_rich Low_complexity Low_complexity 1 21 0 3 1622 324 0 0 0 chr3 136014554 136014590 -23585193 + (TG)n Simple_repeat Simple_repeat 2 37 0 3 1622 294 188 62 0 chr3 136016200 136016296 -23583487 + (TA)n Simple_repeat Simple_repeat 2 103 0 3 1622 2437 199 49 15 chr3 136016708 136017284 -23582499 - MYSERV6-int LTR ERVK -65 8894 8395 3 1622 4792 34 0 2 chr3 136017284 136017851 -23581932 - L1Md_F3 LINE L1 -2 6582 6017 3 1622 2437 196 57 12 chr3 136017851 136017935 -23581848 - MYSERV6-int LTR ERVK -565 8394 8308 3 1622 1009 251 40 13 chr3 136017935 136018238 -23581545 - MYSERV-int LTR ERVK -710 5840 5530 3 1622 618 268 97 7 chr3 136018842 136019131 -23580652 - L1MA8 LINE L1 -3 6288 5974 3 1622 437 293 40 24 chr3 136019780 136019906 -23579877 - B1F SINE Alu -10 139 12 3 1622 411 293 35 116 chr3 136020491 136020723 -23579060 - MTEa LTR MaLR -166 213 1 3 1622 365 406 53 5 chr3 136020944 136021152 -23578631 - MER20 DNA MER1_type 0 219 2 3 1622 228 300 0 24 chr3 136021188 136021270 -23578513 + ID4_ SINE ID 3 82 -1 4 1622 31 0 0 0 chr3 136021505 136021536 -23578247 + AT_rich Low_complexity Low_complexity 1 31 0 4 1622 347 286 47 19 chr3 136022281 136022388 -23577395 - MERVL_2A-int LTR ERVL -4995 766 657 4 1622 533 256 122 31 chr3 136022392 136022678 -23577105 - MERVL_2A-int LTR ERVL -5442 319 8 4 1622 1499 284 5 20 chr3 136022775 136023171 -23576612 - MT2A LTR ERVL -143 390 1 4 1622 368 215 0 147 chr3 136023418 136023527 -23576256 - B4A SINE B4 -18 274 182 4 1622 474 211 19 28 chr3 136023580 136023687 -23576096 - B1_Mur1 SINE Alu 0 149 44 4 1622 429 276 91 27 chr3 136023717 136023903 -23575880 - B3A SINE B2 0 198 1 4 1622 423 88 25 0 chr3 136024184 136024264 -23575519 + Lx9 LINE L1 7515 7596 -48 4 1622 205 208 0 20 chr3 136024275 136024324 -23575459 + A-rich Low_complexity Low_complexity 2 49 0 4 1622 1358 117 29 16 chr3 136024568 136024812 -23574971 + Lx3C LINE L1 5835 6081 -895 4 1622 189 182 10 48 chr3 136024868 136024972 -23574811 + (CA)n Simple_repeat Simple_repeat 2 101 0 5 1622 366 278 26 53 chr3 136025751 136025903 -23573880 - MIR SINE MIR -56 206 59 5 1622 25 0 0 0 chr3 136026085 136026110 -23573673 + AT_rich Low_complexity Low_complexity 1 25 0 5 1622 510 91 0 0 chr3 136026272 136026349 -23573434 + (CATA)n Simple_repeat Simple_repeat 3 79 0 5 1622 222 171 0 0 chr3 136026693 136026734 -23573049 + (TATG)n Simple_repeat Simple_repeat 4 44 0 5 1622 224 59 29 0 chr3 136026751 136026785 -23572998 + (CA)n Simple_repeat Simple_repeat 2 36 0 5 1622 3726 246 40 20 chr3 136026788 136027309 -23572474 - Lx7 LINE L1 -279 7417 6884 5 1622 989 240 188 34 chr3 136027309 136027482 -23572301 - ORR1C1 LTR MaLR -1 377 165 5 1622 537 16 0 0 chr3 136027482 136027544 -23572239 + (GA)n Simple_repeat Simple_repeat 1 62 0 5 1622 989 240 188 34 chr3 136027544 136027694 -23572089 - ORR1C1 LTR MaLR -214 164 5 5 1622 3726 246 40 20 chr3 136027694 136028212 -23571571 - Lx7 LINE L1 -813 6883 6358 5 1622 1067 206 205 3 chr3 136028216 136028504 -23571279 - Lx7 LINE L1 -111 5769 5424 5 1622 3224 61 61 0 chr3 136030060 136030520 -23569263 - L1_Mus1 LINE L1 -410 6156 5669 5 1622 2373 60 41 3 chr3 136030520 136030836 -23568947 + L1_Mus1 LINE L1 6240 6567 0 5 1622 3156 91 5 2 chr3 136031823 136032254 -23567529 - Lx3_Mus LINE L1 0 7009 6578 6 1622 346 169 11 33 chr3 136033338 136033430 -23566353 - L1Md_F2 LINE L1 -1 6581 6492 6 1622 258 32 0 0 chr3 136033743 136033774 -23566009 + (TTTTA)n Simple_repeat Simple_repeat 4 34 0 6 1622 659 215 152 39 chr3 136033774 136034084 -23565699 - Lx7 LINE L1 -7 7689 7345 6 1622 1229 317 119 35 chr3 136034086 136034930 -23564853 + Lx8 LINE L1 6426 7342 -131 6 1622 288 0 0 0 chr3 136034930 136034962 -23564821 + (TG)n Simple_repeat Simple_repeat 1 32 0 6 1622 1229 317 119 35 chr3 136034962 136035081 -23564702 + Lx8 LINE L1 7343 7470 -3 6 1622 248 398 29 0 chr3 136035095 136035198 -23564585 + B4A SINE B4 81 186 -106 6 1622 253 328 0 17 chr3 136035277 136035336 -23564447 + B4 SINE B4 225 282 -10 6 1622 215 315 0 14 chr3 136035374 136035448 -23564335 + (CATATA)n Simple_repeat Simple_repeat 5 77 0 6 1622 414 0 0 0 chr3 136036332 136036378 -23563405 + (TG)n Simple_repeat Simple_repeat 2 47 0 6 1622 624 327 48 28 chr3 136036429 136036932 -23562851 - L1MA6 LINE L1 -373 5927 5415 6 1622 935 300 38 23 chr3 136036938 136037464 -23562319 - L1MA6 LINE L1 -988 5155 4622 6 1622 518 93 0 11 chr3 136037478 136037565 -23562218 + (TA)n Simple_repeat Simple_repeat 2 87 0 7 1622 1421 223 179 48 chr3 136037565 136038045 -23561738 - MT2B LTR ERVL -58 543 1 7 1622 779 298 61 49 chr3 136038081 136038382 -23561401 - L1MA6 LINE L1 -1655 4488 4152 6 1622 1463 242 42 3 chr3 136038382 136038738 -23561045 + ORR1D2 LTR MaLR 1 370 0 7 1622 779 296 54 48 chr3 136038738 136039055 -23560728 - L1MA6 LINE L1 -1729 4151 3826 6 1622 528 165 128 0 chr3 136039388 136039497 -23560286 + B1F SINE Alu 20 142 -7 7 1622 268 314 19 28 chr3 136039529 136039637 -23560146 - L2a LINE L2 -43 3383 3277 7 1622 255 343 41 14 chr3 136039679 136039824 -23559959 + MER104 DNA Tc2 29 177 -4 7 1622 323 347 53 61 chr3 136039828 136040339 -23559444 - L2a LINE L2 -153 3273 2766 7 1622 227 311 95 0 chr3 136041507 136041581 -23558202 - ID4_ SINE ID 0 83 3 7 1622 246 206 0 0 chr3 136042144 136042207 -23557576 + (CA)n Simple_repeat Simple_repeat 1 63 0 7 1622 219 69 0 0 chr3 136042331 136042360 -23557423 + (CA)n Simple_repeat Simple_repeat 2 30 0 7 1622 197 308 80 90 chr3 136042752 136042852 -23556931 + L3 LINE CR1 4389 4487 -2 7 1622 376 297 66 82 chr3 136044580 136045102 -23554681 - L1MA4 LINE L1 -377 5923 5421 8 1622 1063 315 16 33 chr3 136047328 136047752 -23552031 - Lx8 LINE L1 -873 6600 6184 8 1622 667 293 112 10 chr3 136047772 136048075 -23551708 + Lx8 LINE L1 6673 7006 -467 8 1622 746 295 24 47 chr3 136048166 136048504 -23551279 + Lx8 LINE L1 7141 7470 -3 8 1622 540 314 5 130 chr3 136049850 136050073 -23549710 - B3A SINE B2 -3 195 1 8 1622 204 125 0 0 chr3 136050598 136050630 -23549153 + (CA)n Simple_repeat Simple_repeat 1 32 0 8 1622 1691 325 94 16 chr3 136050636 136051619 -23548164 + Lx8 LINE L1 6202 7260 -213 8 1623 261 0 0 0 chr3 136053094 136053123 -23546660 + (A)n Simple_repeat Simple_repeat 1 29 0 8 1623 6366 43 14 2 chr3 136053234 136054023 -23545760 - L1Md_F2 LINE L1 0 6582 5785 8 1623 29 70 0 0 chr3 136054840 136054897 -23544886 + AT_rich Low_complexity Low_complexity 1 57 0 8 1623 2108 195 19 53 chr3 136055074 136055546 -23544237 + Lx5 LINE L1 6592 7047 -3 8 1623 963 130 6 17 chr3 136055697 136055877 -23543906 + GA-rich Low_complexity Low_complexity 2 179 0 9 1623 445 327 9 0 chr3 136056942 136057049 -23542734 + ID_B1 SINE B4 21 128 -96 9 1623 1951 53 7 22 chr3 136057146 136057418 -23542365 + L1Md_F2 LINE L1 5319 5586 -297 9 1623 8130 43 2 2 chr3 136057418 136058412 -23541371 + L1Md_F2 LINE L1 5587 6580 -2 9 1623 4312 56 0 0 chr3 136058408 136058945 -23540838 + L1Md_F2 LINE L1 6046 6582 0 9 1623 436 72 0 28 chr3 136059181 136059252 -23540531 + (GA)n Simple_repeat Simple_repeat 2 70 0 9 1623 1967 202 31 41 chr3 136060160 136060577 -23539206 - MTC LTR MaLR -8 413 1 9 1623 411 98 0 0 chr3 136061677 136061738 -23538045 + (CTG)n Simple_repeat Simple_repeat 3 63 0 9 1623 483 390 14 9 chr3 136061738 136061958 -23537825 + MT2A LTR ERVL 242 462 -71 9 1623 342 0 0 0 chr3 136061964 136062002 -23537781 + (CA)n Simple_repeat Simple_repeat 2 39 0 9 1623 1689 149 111 26 chr3 136062502 136062888 -23536895 - Lx LINE L1 -8 6646 6228 9 1623 200 31 0 59 chr3 136063288 136063322 -23536461 + (TTTTTG)n Simple_repeat Simple_repeat 4 35 0 1 1623 749 205 207 8 chr3 136063329 136063575 -23536208 - Lx4B LINE L1 -5 7053 6759 1 1623 430 248 13 0 chr3 136063824 136063981 -23535802 + (TA)n Simple_repeat Simple_repeat 2 160 0 1 1623 586 257 40 40 chr3 136064183 136064357 -23535426 + B3 SINE B2 3 176 -40 1 1623 1191 295 77 55 chr3 136064696 136066198 -23533585 + L1M3 LINE L1 3417 4952 -1188 1 1623 398 273 133 64 chr3 136066380 136066568 -23533215 + B4A SINE B4 6 206 -86 1 1623 195 42 0 0 chr3 136066576 136066600 -23533183 + (GA)n Simple_repeat Simple_repeat 1 24 0 1 1623 2517 218 40 4 chr3 136066716 136067214 -23532569 + RMER20A LTR ERVK 1 516 0 1 1623 322 274 85 45 chr3 136067255 136067431 -23532352 + L1M5 LINE L1 3745 3927 -2219 1 1623 455 0 18 0 chr3 136067480 136067535 -23532248 + (TG)n Simple_repeat Simple_repeat 2 57 0 1 1623 1141 306 25 19 chr3 136069655 136069971 -23529812 - ORR1E LTR MaLR -41 318 1 1 1623 766 324 33 5 chr3 136070850 136071061 -23528722 + ID_B1 SINE B4 1 217 -7 1 1623 230 174 12 0 chr3 136071070 136071160 -23528623 + GA-rich Low_complexity Low_complexity 1 91 0 1 1623 23 33 0 0 chr3 136073140 136073170 -23526613 + AT_rich Low_complexity Low_complexity 1 30 0 1 1623 3221 48 5 5 chr3 136074207 136074603 -23525180 + MTA_Mm LTR MaLR 1 396 0 1 1623 31 0 0 0 chr3 136074616 136074647 -23525136 + AT_rich Low_complexity Low_complexity 1 31 0 1 1623 311 336 13 33 chr3 136075884 136076035 -23523748 + B1F1 SINE Alu 1 148 -1 1 1623 257 257 143 0 chr3 136076038 136076108 -23523675 + ID4_ SINE ID 1 80 -3 1 1623 1131 55 7 40 chr3 136076272 136076423 -23523360 + B1_Mm SINE Alu 1 146 -1 1 1623 459 0 0 0 chr3 136076626 136076677 -23523106 + (TG)n Simple_repeat Simple_repeat 2 52 0 1 1623 216 67 0 0 chr3 136076987 136077017 -23522766 + (GGA)n Simple_repeat Simple_repeat 2 31 0 1 1623 313 312 73 46 chr3 136077017 136077168 -23522615 + HAL1-3A_ME LINE L1 2284 2438 -420 1 1623 2184 303 60 20 chr3 136080431 136081320 -23518463 + Lx8 LINE L1 6549 7472 -1 1 1623 2076 188 47 0 chr3 136082511 136082895 -23516888 + MTD LTR MaLR 18 419 0 1 1623 319 278 35 9 chr3 136084421 136084537 -23515246 + L1MD LINE L1 5642 5760 -2235 1 1623 632 207 89 0 chr3 136084752 136084887 -23514896 + B1F1 SINE Alu 1 147 -2 1 1623 486 337 142 28 chr3 136085089 136085519 -23514264 + MLT1F LTR MaLR 41 519 -29 1 1623 6759 7 0 4 chr3 136087357 136088111 -23511672 + L1Md_T LINE L1 5832 6582 0 1 1623 975 283 4 21 chr3 136088340 136088582 -23511201 + B4 SINE B4 55 292 0 1 1623 728 206 0 0 chr3 136089056 136089192 -23510591 + B1_Mm SINE Alu 5 140 -7 1 1623 384 22 0 0 chr3 136089384 136089429 -23510354 + (GA)n Simple_repeat Simple_repeat 1 45 0 1 1623 213 65 0 0 chr3 136089782 136089813 -23509970 + (A)n Simple_repeat Simple_repeat 1 31 0 1 1623 360 0 0 0 chr3 136090416 136090456 -23509327 + (CA)n Simple_repeat Simple_repeat 2 41 0 1 1623 206 356 124 60 chr3 136091874 136092340 -23507443 + L2a LINE L2 2931 3426 0 1 1623 348 24 0 0 chr3 136093123 136093164 -23506619 + (CTATT)n Simple_repeat Simple_repeat 4 44 0 1 1623 341 300 8 48 chr3 136094235 136094361 -23505422 - B4A SINE B4 -6 286 166 1 1623 291 263 63 11 chr3 136095678 136095779 -23504004 + B1F2 SINE Alu 4 106 -11 1 1623 339 25 0 0 chr3 136095780 136095820 -23503963 + (TC)n Simple_repeat Simple_repeat 1 40 0 1 1623 268 298 76 53 chr3 136096364 136096495 -23503288 + MIR3 SINE MIR 32 165 -43 1 1623 351 150 0 0 chr3 136096752 136096812 -23502971 + (CA)n Simple_repeat Simple_repeat 1 60 0 1 1623 592 319 70 3 chr3 136097026 136097381 -23502402 + MTE2b LTR MaLR 1 379 0 1 1623 249 33 0 0 chr3 136097447 136097477 -23502306 + (A)n Simple_repeat Simple_repeat 1 30 0 1 1623 216 0 0 0 chr3 136097979 136098003 -23501780 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1 1623 606 28 0 0 chr3 136098141 136098213 -23501570 + (TA)n Simple_repeat Simple_repeat 2 73 0 1 1623 1521 260 49 27 chr3 136099586 136100123 -23499660 - Lx6 LINE L1 -16 7444 6833 1 1623 251 295 60 15 chr3 136100258 136100392 -23499391 + LTR37B LTR ERV1 11 150 -318 1 1623 288 0 0 0 chr3 136100802 136100834 -23498949 + (TG)n Simple_repeat Simple_repeat 2 33 0 1 1623 395 347 0 0 chr3 136100861 136100959 -23498824 - RSINE1 SINE B4 -63 102 5 1 1623 251 364 30 0 chr3 136100974 136101073 -23498710 + B1F SINE Alu 1 102 -47 1 1623 3190 273 61 48 chr3 136101078 136102276 -23497507 - Lx9 LINE L1 -339 7305 6092 1 1623 357 43 0 0 chr3 136103635 136103682 -23496101 + (TCTCTG)n Simple_repeat Simple_repeat 2 48 0 1 1623 378 57 0 0 chr3 136103700 136103753 -23496030 + (CAGAGA)n Simple_repeat Simple_repeat 3 55 0 1 1623 1272 255 80 40 chr3 136103815 136104314 -23495469 - MERVK26-int LTR ERVK -171 6748 6230 1 1623 26 30 0 0 chr3 136104682 136104715 -23495068 + AT_rich Low_complexity Low_complexity 1 33 0 1 1623 304 159 104 96 chr3 136104720 136104845 -23494938 - RLTR19-int LTR ERVK -2184 3953 3828 1 1623 296 278 0 0 chr3 136106023 136106095 -23493688 - Lx7 LINE L1 -2035 5661 5590 1 1623 663 300 52 21 chr3 136106080 136106515 -23493268 + L1_Rod LINE L1 4891 5373 -770 1 1623 1638 35 7 1 chr3 136106548 136106788 -23492995 - MT2_Mm LTR ERVL 0 493 229 1 1623 625 201 59 30 chr3 136106800 136106969 -23492814 + L1_Rod LINE L1 5383 5556 -291 1 1623 715 308 5 9 chr3 136106982 136107195 -23492588 - ID_B1 SINE B4 -11 213 2 1 1623 444 19 0 0 chr3 136107299 136107352 -23492431 + (TG)n Simple_repeat Simple_repeat 2 54 0 1 1623 198 0 0 0 chr3 136107590 136107612 -23492171 + (TAAAAA)n Simple_repeat Simple_repeat 3 24 0 1 1623 749 199 0 0 chr3 136108350 136108486 -23491297 + B1_Mus1 SINE Alu 1 136 -12 1 1623 212 0 36 0 chr3 136108490 136108518 -23491265 + (CAA)n Simple_repeat Simple_repeat 2 30 0 1 1623 4963 142 39 24 chr3 136108893 136109292 -23490491 - Lx4A LINE L1 -9 7049 6655 1 1623 1866 171 29 27 chr3 136109292 136109701 -23490082 + RMER17C LTR ERVK 1 410 0 1 1623 4963 142 39 24 chr3 136109701 136110165 -23489618 - Lx4A LINE L1 -404 6654 6173 1 1623 4810 103 39 10 chr3 136110166 136111228 -23488555 + Lx4A LINE L1 5075 6175 -883 1 1623 598 225 29 0 chr3 136111223 136111361 -23488422 + Lx6 LINE L1 7308 7449 -11 1 1623 1153 75 35 0 chr3 136111692 136111866 -23487917 + (TCTCCC)n Simple_repeat Simple_repeat 1 180 0 1 1623 321 135 0 0 chr3 136111867 136111919 -23487864 + (TCCC)n Simple_repeat Simple_repeat 3 54 0 1 1623 537 316 72 29 chr3 136112805 136113082 -23486701 + MER2 DNA MER2_type 26 314 -31 1 1623 235 333 40 0 chr3 136113188 136113287 -23486496 + MIR SINE MIR 96 198 -64 1 1623 34 72 0 0 chr3 136113321 136113390 -23486393 + AT_rich Low_complexity Low_complexity 1 69 0 1 1623 255 366 22 65 chr3 136113579 136113810 -23485973 - MIR SINE MIR -27 235 15 1 1623 215 196 22 0 chr3 136113935 136113981 -23485802 + B4 SINE B4 1 47 -245 1 1623 679 319 95 25 chr3 136114900 136115382 -23484401 + MLT2B1 LTR ERVL 3 518 -2 1 1623 266 309 14 14 chr3 136115630 136115699 -23484084 + MIRc SINE MIR 82 150 -118 1 1623 630 298 51 40 chr3 136115818 136115993 -23483790 - MER63A DNA AcHobo -33 177 1 1 1623 314 343 45 40 chr3 136116525 136116701 -23483082 - LTR16E2 LTR ERVL -1 567 391 1 1623 271 42 41 20 chr3 136118525 136118574 -23481209 + (TTTG)n Simple_repeat Simple_repeat 3 52 0 1 1623 817 193 0 7 chr3 136118575 136118716 -23481067 - B1_Mus2 SINE Alu -6 141 2 1 1623 456 326 148 57 chr3 136118821 136119328 -23480455 + RLTR18 LTR ERVK 33 585 -31 1 1623 226 333 51 0 chr3 136119427 136119505 -23480278 + MIRb SINE MIR 15 96 -172 1 1623 238 296 0 36 chr3 136120652 136120736 -23479047 + GA-rich Low_complexity Low_complexity 4 84 0 1 1623 529 323 43 47 chr3 136120753 136120964 -23478819 + ID_B1 SINE B4 15 224 0 1 1623 1251 32 0 0 chr3 136121067 136121223 -23478560 + (CA)n Simple_repeat Simple_repeat 1 156 0 1 1623 326 380 7 13 chr3 136122002 136122154 -23477629 + RSINE1 SINE B4 13 163 -2 1 1623 459 247 6 0 chr3 136122178 136122532 -23477251 + (CA)n Simple_repeat Simple_repeat 1 356 0 1 1623 355 342 26 13 chr3 136122840 136122991 -23476792 - LTR33 LTR ERVL -5 510 358 1 1623 198 0 0 0 chr3 136123148 136123170 -23476613 + (CA)n Simple_repeat Simple_repeat 2 23 0 1 1623 294 205 0 0 chr3 136125166 136125249 -23474534 + CT-rich Low_complexity Low_complexity 1 83 0 1 1623 264 154 0 0 chr3 136125270 136125322 -23474461 + (CA)n Simple_repeat Simple_repeat 1 52 0 1 1623 264 319 77 0 chr3 136126376 136126467 -23473316 - L2a LINE L2 0 3426 3329 1 1623 817 286 182 20 chr3 136126481 136126920 -23472863 - MER89 LTR ERV1 -37 522 13 1 1623 24637 78 121 5 chr3 136127150 136131783 -23468000 + L1Md_F2 LINE L1 420 5584 -299 1 1623 7872 57 4 1 chr3 136131785 136132776 -23467007 + L1Md_F2 LINE L1 5587 6580 -2 1 1623 6576 31 6 0 chr3 136132777 136133554 -23466229 + L1Md_F2 LINE L1 5786 6567 -15 1 1623 741 307 7 21 chr3 136133651 136133937 -23465846 + Lx6 LINE L1 7179 7460 0 1 1623 249 281 11 0 chr3 136133999 136134088 -23465695 + L1MA5 LINE L1 6177 6266 -34 1 1623 337 248 20 11 chr3 136134191 136134297 -23465486 - PB1D10 SINE Alu 0 120 4 1 1623 201 74 0 0 chr3 136134404 136134431 -23465352 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 1623 1749 228 55 53 chr3 136134522 136135057 -23464726 + RLTR26 LTR ERVK 1 615 -27 1 1623 4236 53 2 0 chr3 136135057 136135580 -23464203 + L1Md_F2 LINE L1 6047 6570 -12 1 1623 400 227 10 10 chr3 136135580 136135606 -23464177 + RLTR26 LTR ERVK 616 641 -1 1 1623 813 217 177 67 chr3 136135653 136136014 -23463769 - RCHARR1 DNA MER1_type -1 973 573 2 1623 2011 41 4 0 chr3 136136221 136136467 -23463316 + L1Md_T LINE L1 6335 6581 -1 2 1623 385 289 29 0 chr3 136139070 136139174 -23460609 - PB1D10 SINE Alu -9 108 2 2 1623 2941 125 2 21 chr3 136139738 136140219 -23459564 - L1_Mm LINE L1 -125 5758 5287 2 1623 7391 74 0 0 chr3 136140212 136141240 -23458543 - L1_Mus1 LINE L1 0 6567 5540 2 1623 785 68 94 0 chr3 136141235 136141352 -23458431 + L1_Mus1 LINE L1 5414 5541 -342 2 1623 2582 99 3 5 chr3 136141377 136141761 -23458022 + L1_Mus4 LINE L1 5804 6186 -450 2 1623 221 333 31 10 chr3 136142265 136142362 -23457421 + L2b LINE L2 2577 2675 -744 2 1623 1606 36 0 0 chr3 136142600 136142796 -23456987 + L1Md_F2 LINE L1 5389 5584 -299 2 1623 8375 28 3 1 chr3 136142798 136143778 -23456005 + L1Md_F2 LINE L1 5587 6568 -14 2 1623 1059 311 20 46 chr3 136143785 136144136 -23455647 + ORR1D1 LTR MaLR 17 358 -16 2 1623 1608 299 140 37 chr3 136144250 136145195 -23454588 - Lx8 LINE L1 -30 7443 6402 2 1623 431 270 17 17 chr3 136145189 136145306 -23454477 + Lx8 LINE L1 6271 6387 -1086 2 1623 495 0 0 0 chr3 136145520 136145575 -23454208 + (TC)n Simple_repeat Simple_repeat 2 56 0 2 1623 640 356 78 28 chr3 136145717 136146038 -23453745 + MER45B DNA Tip100 114 450 -590 2 1623 552 299 82 41 chr3 136146133 136146450 -23453333 + MER45B DNA Tip100 604 933 -107 2 1623 803 217 4 0 chr3 136146487 136146745 -23453038 + CT-rich Low_complexity Low_complexity 1 259 0 2 1623 183 373 20 47 chr3 136147000 136147149 -23452634 + L2b LINE L2 3231 3375 0 2 1623 21 0 0 0 chr3 136147839 136147860 -23451923 + AT_rich Low_complexity Low_complexity 1 21 0 2 1623 665 265 100 0 chr3 136147963 136148163 -23451620 + ID_B1 SINE B4 2 221 -3 2 1623 207 139 0 0 chr3 136148955 136148991 -23450792 + (CA)n Simple_repeat Simple_repeat 1 36 0 2 1623 1331 82 5 0 chr3 136149031 136149215 -23450568 - L1_Mus1 LINE L1 0 6567 6383 2 1623 3205 145 124 22 chr3 136149578 136150510 -23449273 + Lx3_Mus LINE L1 3 1361 -4525 2 1623 18529 92 21 13 chr3 136150563 136154517 -23445266 + Lx3_Mus LINE L1 3018 7001 -8 2 1623 325 281 80 10 chr3 136154614 136154656 -23445127 + L1MD LINE L1 4325 4372 -1774 2 1623 243 0 0 0 chr3 136154656 136154683 -23445100 + (TTG)n Simple_repeat Simple_repeat 2 28 0 2 1623 325 281 80 10 chr3 136154683 136154841 -23444942 + L1MD LINE L1 4373 4538 -1608 2 1623 928 320 19 27 chr3 136155087 136155498 -23444285 - Lx8 LINE L1 -899 6574 6167 2 1623 506 272 103 60 chr3 136155755 136155939 -23443844 + B3A SINE B2 4 195 0 2 1623 1580 270 74 50 chr3 136155979 136156681 -23443102 - Lx8 LINE L1 -11 5869 5151 2 1623 231 327 26 0 chr3 136156722 136156835 -23442948 + L1M5 LINE L1 4723 4838 -1308 2 1623 417 304 22 62 chr3 136156888 136157067 -23442716 + MLT1D LTR MaLR 61 232 -273 2 1623 360 0 0 0 chr3 136157693 136157733 -23442050 + (TG)n Simple_repeat Simple_repeat 1 40 0 2 1623 1739 249 17 19 chr3 136159014 136159427 -23440356 - MTC LTR MaLR -4 417 6 2 1623 310 320 20 0 chr3 136160331 136160481 -23439302 + (TG)n Simple_repeat Simple_repeat 1 153 0 2 1623 399 299 43 75 chr3 136160679 136160867 -23438916 + B3A SINE B2 1 182 -16 2 1623 594 0 0 0 chr3 136160884 136160950 -23438833 + (TC)n Simple_repeat Simple_repeat 1 66 0 2 1623 516 95 0 0 chr3 136160950 136161033 -23438750 + (CA)n Simple_repeat Simple_repeat 1 84 0 2 1623 1899 311 95 34 chr3 136161103 136162143 -23437640 + Lx8 LINE L1 6222 7325 -148 2 1623 225 65 0 0 chr3 136163312 136163343 -23436440 + (TTG)n Simple_repeat Simple_repeat 2 32 0 2 1623 297 0 0 0 chr3 136163903 136163936 -23435847 + (TC)n Simple_repeat Simple_repeat 2 34 0 2 1623 420 55 0 0 chr3 136163936 136163990 -23435793 + (TG)n Simple_repeat Simple_repeat 2 56 0 2 1623 1807 117 26 0 chr3 136164457 136164730 -23435053 - Lx2 LINE L1 -1 6996 6717 2 1623 421 303 105 78 chr3 136164749 136165043 -23434740 + MER67D LTR ERV1 1 302 -212 2 1623 682 269 14 5 chr3 136165381 136165590 -23434193 + Lx7 LINE L1 7161 7371 -325 2 1623 307 206 0 0 chr3 136165638 136165711 -23434072 + Lx7 LINE L1 7358 7430 -266 2 1623 1179 249 40 20 chr3 136167074 136167377 -23432406 + MTEb LTR MaLR 1 309 -70 2 1623 206 146 24 0 chr3 136167379 136167420 -23432363 + (CAAA)n Simple_repeat Simple_repeat 3 44 0 2 1623 320 331 80 49 chr3 136167614 136167941 -23431842 - MER110-int LTR ERV1 -2144 2503 2167 2 1623 367 314 69 5 chr3 136168512 136168701 -23431082 + B3 SINE B2 3 203 -13 2 1623 306 247 0 0 chr3 136168702 136168795 -23430988 + (CA)n Simple_repeat Simple_repeat 2 94 0 2 1623 653 210 0 0 chr3 136169301 136169420 -23430363 + MTEb LTR MaLR 301 419 0 2 1623 22 0 0 0 chr3 136169526 136169548 -23430235 + AT_rich Low_complexity Low_complexity 1 22 0 2 1623 686 339 80 54 chr3 136169825 136170527 -23429256 - ERVL-E-int LTR ERVL -2839 2828 2109 2 1623 645 275 114 28 chr3 136170810 136171064 -23428719 + B4A SINE B4 3 278 -14 2 1623 501 309 65 6 chr3 136171434 136171603 -23428180 + LTR33B LTR ERVL 325 503 0 2 1623 570 277 54 6 chr3 136172173 136172340 -23427443 - B3A SINE B2 -16 182 8 2 1623 262 334 0 32 chr3 136172819 136172914 -23426869 - ID4_ SINE ID -59 93 2 2 1623 40651 11 1 6 chr3 136173715 136179911 -23419872 - L1Md_A LINE L1 0 6582 422 2 1623 637 273 69 6 chr3 136180088 136180261 -23419522 - B3 SINE B2 -9 207 24 2 1623 16263 80 3 1 chr3 136181257 136183450 -23416333 + L1Md_F2 LINE L1 3389 5586 -297 2 202 7575 53 24 6 chr3 136183450 136184417 -23415366 + L1Md_F2 LINE L1 5587 6570 -12 2 1624 270 0 0 0 chr3 136184624 136184654 -23415129 + (TAAA)n Simple_repeat Simple_repeat 4 33 0 2 1624 3516 127 37 39 chr3 136184691 136185283 -23414500 + Lx LINE L1 6064 6654 0 2 1624 268 356 73 16 chr3 136185332 136185523 -23414260 - MIR SINE MIR -41 221 20 2 1624 204 339 169 0 chr3 136185701 136185825 -23413958 - L2a LINE L2 -24 3402 3258 2 1624 284 259 145 53 chr3 136186016 136186170 -23413613 + MTD LTR MaLR 18 189 -218 2 1624 569 257 0 34 chr3 136186170 136186320 -23413463 + B1_Mur1 SINE Alu 1 142 -7 2 1624 360 59 0 0 chr3 136186325 136186376 -23413407 + (CAGA)n Simple_repeat Simple_repeat 2 52 0 2 1624 830 29 9 0 chr3 136186428 136186533 -23413250 + (GGGA)n Simple_repeat Simple_repeat 4 109 0 2 1624 651 238 68 26 chr3 136186535 136186725 -23413058 + MTD LTR MaLR 209 406 -13 2 1624 1675 347 46 68 chr3 136186895 136187941 -23411842 + Lx9 LINE L1 6416 7438 -206 2 1624 411 21 0 0 chr3 136187988 136188036 -23411747 + (TG)n Simple_repeat Simple_repeat 1 48 0 2 1624 546 16 0 0 chr3 136188036 136188098 -23411685 + (GA)n Simple_repeat Simple_repeat 1 63 0 2 1624 200 318 79 0 chr3 136188518 136188581 -23411202 - L2a LINE L2 -833 2586 2519 2 1624 338 305 154 77 chr3 136189715 136190031 -23409752 + L1M2 LINE L1 2905 3248 -2895 2 1624 288 0 0 0 chr3 136190031 136190063 -23409720 + (CA)n Simple_repeat Simple_repeat 2 33 0 2 1624 338 305 154 77 chr3 136190063 136190148 -23409635 + L1M2 LINE L1 3249 3337 -2806 2 1624 348 43 0 0 chr3 136190187 136190233 -23409550 + (CAGA)n Simple_repeat Simple_repeat 4 49 0 2 1624 1689 302 61 107 chr3 136190310 136190764 -23409019 + L1M2 LINE L1 3497 3955 -2185 2 1624 1164 55 0 7 chr3 136190764 136190912 -23408871 + B1_Mus1 SINE Alu 2 148 0 2 1624 1943 286 61 49 chr3 136190912 136192190 -23407593 + L1M2 LINE L1 3956 5151 -992 2 1624 260 161 56 22 chr3 136192193 136192282 -23407501 + (TA)n Simple_repeat Simple_repeat 1 92 0 2 1624 930 381 21 8 chr3 136192386 136192748 -23407035 + MTE-int LTR MaLR 1161 1527 -53 2 1624 529 343 42 112 chr3 136192748 136193132 -23406651 + ORR1E LTR MaLR 1 357 -2 2 1624 21 0 0 0 chr3 136193591 136193612 -23406171 + AT_rich Low_complexity Low_complexity 1 21 0 2 1624 363 273 88 29 chr3 136194902 136195038 -23404745 - B1F2 SINE Alu -5 144 1 2 1624 347 320 139 35 chr3 136196574 136196862 -23402921 + MLT1A LTR MaLR 31 348 -26 2 1624 461 259 0 18 chr3 136197080 136197194 -23402589 + PB1D10 SINE Alu 5 116 -1 2 1624 1035 82 7 0 chr3 136197357 136197492 -23402291 + B1_Mus1 SINE Alu 1 136 -12 2 1624 530 15 15 0 chr3 136197492 136197559 -23402224 + (CAAAA)n Simple_repeat Simple_repeat 3 70 0 2 1624 1201 196 113 83 chr3 136197591 136197964 -23401819 - ORR1C2 LTR MaLR 0 384 1 2 1624 496 274 9 9 chr3 136197980 136198094 -23401689 + B3A SINE B2 47 160 -38 2 1624 288 0 0 0 chr3 136198099 136198131 -23401652 + (CA)n Simple_repeat Simple_repeat 1 32 0 2 1624 180 302 18 54 chr3 136198359 136198415 -23401368 + L3b LINE CR1 365 418 -64 2 1624 361 277 141 0 chr3 136198715 136198892 -23400891 - L1MC1 LINE L1 -4 6329 6128 2 1624 274 238 124 0 chr3 136198992 136199097 -23400686 - L1MC1 LINE L1 -362 5982 5865 2 1624 631 146 239 0 chr3 136199174 136199304 -23400479 + RLTR26 LTR ERVK 1 161 -481 2 1624 235 321 24 12 chr3 136199403 136199485 -23400298 + RMER13B LTR ERVK 817 899 -9 2 1624 981 248 88 7 chr3 136199563 136200018 -23399765 - L1MC LINE L1 -2630 3516 3025 2 1624 237 98 0 0 chr3 136200177 136200218 -23399565 + (CAA)n Simple_repeat Simple_repeat 2 42 0 2 1624 1087 86 7 0 chr3 136200903 136201054 -23398729 + L1_Mus2 LINE L1 4939 5090 -793 2 1624 2459 62 3 3 chr3 136201054 136201380 -23398403 - IAPEY2_LTR LTR ERVK 0 357 32 2 1624 365 211 26 0 chr3 136201390 136201466 -23398317 + L1_Mus2 LINE L1 5085 5162 -721 2 1624 7152 73 18 28 chr3 136201466 136202619 -23397164 + L1_Mus2 LINE L1 5430 6566 0 2 1624 847 187 20 56 chr3 136204465 136204663 -23395120 + B3A SINE B2 2 192 -6 2 1624 618 130 111 0 chr3 136204804 136204912 -23394871 + PB1D9 SINE Alu 1 120 0 2 1624 225 0 0 0 chr3 136204912 136204937 -23394846 + (A)n Simple_repeat Simple_repeat 1 25 0 2 1624 23 54 0 0 chr3 136205263 136205300 -23394483 + AT_rich Low_complexity Low_complexity 1 37 0 2 1624 213 235 0 0 chr3 136205516 136205567 -23394216 + (TA)n Simple_repeat Simple_repeat 1 51 0 2 1624 519 278 123 14 chr3 136205914 136206126 -23393657 - Lx8 LINE L1 -375 7098 6864 2 1624 840 219 101 11 chr3 136206345 136206505 -23393278 + B3 SINE B2 3 165 -51 2 1624 504 45 0 0 chr3 136206505 136206572 -23393211 + (CA)n Simple_repeat Simple_repeat 2 68 0 2 1624 840 219 101 11 chr3 136206572 136206600 -23393183 + B3 SINE B2 166 206 -10 2 1624 421 329 119 53 chr3 136206709 136206860 -23392923 + RSINE1 SINE B4 5 165 0 2 1624 315 274 87 17 chr3 136206966 136207081 -23392702 + L1MCa LINE L1 1258 1380 -5128 2 1624 272 270 109 17 chr3 136207197 136207427 -23392356 + L1MCa LINE L1 1551 1801 -4707 2 1624 282 289 25 8 chr3 136207815 136207937 -23391846 - L1M2 LINE L1 -3276 2867 2744 2 1624 1115 306 82 60 chr3 136207948 136208916 -23390867 + L1MA4A LINE L1 4626 5580 -267 2 1624 423 0 0 0 chr3 136208916 136208963 -23390820 + (TG)n Simple_repeat Simple_repeat 1 47 0 2 1624 1115 286 50 26 chr3 136208963 136209234 -23390549 + L1MA4A LINE L1 5581 5927 -376 2 1624 900 186 0 0 chr3 136209237 136209414 -23390369 + (TA)n Simple_repeat Simple_repeat 2 178 0 2 1624 364 223 22 22 chr3 136209431 136209610 -23390173 + (TA)n Simple_repeat Simple_repeat 2 180 0 2 1624 420 303 46 0 chr3 136209978 136210087 -23389696 + B3 SINE B2 1 114 -102 2 1624 1126 253 107 3 chr3 136210087 136210404 -23389379 - ORR1D1 LTR MaLR -20 354 5 3 1624 346 298 0 0 chr3 136210406 136210490 -23389293 + B3 SINE B2 122 205 -11 2 1624 974 264 152 43 chr3 136210509 136211295 -23388488 + L1MCa LINE L1 2255 3128 -3193 2 1624 288 275 9 18 chr3 136211325 136211436 -23388347 + L1MCa LINE L1 5795 5904 -2056 2 1624 510 170 0 0 chr3 136211489 136211583 -23388200 + (CATA)n Simple_repeat Simple_repeat 2 95 0 3 1624 604 337 58 23 chr3 136212420 136212818 -23386965 - MLT2D LTR ERVL 0 414 3 3 1624 315 349 56 0 chr3 136212842 136212968 -23386815 + ID_B1 SINE B4 86 218 -6 3 1624 21 0 0 0 chr3 136212973 136212994 -23386789 + AT_rich Low_complexity Low_complexity 1 21 0 3 1624 660 227 0 8 chr3 136213098 136213227 -23386556 - B1_Mur1 SINE Alu -7 142 15 3 1624 721 286 48 0 chr3 136213345 136213551 -23386232 - B3 SINE B2 0 216 1 3 1624 243 0 0 0 chr3 136214124 136214151 -23385632 + (TG)n Simple_repeat Simple_repeat 1 27 0 3 1624 804 284 80 46 chr3 136214151 136214406 -23385377 - B4 SINE B4 -26 266 2 3 1624 327 331 221 42 chr3 136214531 136214979 -23384804 - L1MC4 LINE L1 -4427 1788 1261 3 1624 386 85 0 17 chr3 136216110 136216170 -23383613 + (GGAGAA)n Simple_repeat Simple_repeat 3 61 0 3 1624 24 0 0 0 chr3 136216328 136216352 -23383431 + AT_rich Low_complexity Low_complexity 1 24 0 3 1624 251 338 0 39 chr3 136216840 136216917 -23382866 - LTR79 LTR ERVL -31 496 423 3 1624 1124 187 42 0 chr3 136217357 136217571 -23382212 + URR1A DNA MER1_type 1 223 -3 3 1624 762 43 0 0 chr3 136218366 136218460 -23381323 + (TAGA)n Simple_repeat Simple_repeat 4 97 0 3 1624 273 347 32 91 chr3 136218582 136218801 -23380982 + MLT1J-int LTR MaLR 916 1121 -266 3 1624 356 260 20 32 chr3 136219115 136219216 -23380567 + ID_B1 SINE B4 77 172 -52 3 1624 368 362 142 22 chr3 136219398 136219672 -23380111 + HAL1 LINE L1 125 431 -2076 3 1624 291 93 0 0 chr3 136220177 136220220 -23379563 + (TC)n Simple_repeat Simple_repeat 2 44 0 3 1624 6726 50 2 0 chr3 136220333 136221154 -23378629 - L1_Mus1 LINE L1 0 6567 5745 3 1624 23 78 0 0 chr3 136221233 136221284 -23378499 + AT_rich Low_complexity Low_complexity 1 51 0 3 1624 410 305 17 0 chr3 136221834 136221952 -23377831 + MTD LTR MaLR 19 138 -281 3 1624 670 325 72 72 chr3 136221967 136222285 -23377498 + MTD LTR MaLR 86 403 -16 3 1624 293 374 95 39 chr3 136222442 136222748 -23377035 + MTE-int LTR MaLR 178 500 -1080 3 1624 12753 144 16 12 chr3 136223265 136226299 -23373484 + Lx LINE L1 3609 6653 -1 3 1624 309 271 119 37 chr3 136227430 136227564 -23372219 + B2_Mm2 SINE B2 1 145 -50 3 1624 486 0 0 0 chr3 136227626 136227680 -23372103 + (TC)n Simple_repeat Simple_repeat 2 55 0 3 1624 441 0 0 0 chr3 136227680 136227728 -23372055 + (TG)n Simple_repeat Simple_repeat 2 50 0 3 1624 274 185 37 12 chr3 136227827 136227893 -23371890 + (TAGA)n Simple_repeat Simple_repeat 2 69 0 3 1624 486 0 0 0 chr3 136227893 136227947 -23371836 + (GA)n Simple_repeat Simple_repeat 1 54 0 3 1624 274 185 37 12 chr3 136227947 136227962 -23371821 + (TAGA)n Simple_repeat Simple_repeat 2 16 0 3 1624 783 169 17 0 chr3 136227979 136228151 -23371632 + (TAGA)n Simple_repeat Simple_repeat 1 175 0 3 1624 189 0 0 0 chr3 136228165 136228186 -23371597 + (GA)n Simple_repeat Simple_repeat 1 21 0 3 1624 208 91 21 64 chr3 136228897 136228944 -23370839 + T-rich Low_complexity Low_complexity 2 46 0 3 1624 415 286 116 15 chr3 136228962 136229161 -23370622 - Lx8 LINE L1 -9 7464 7246 3 1624 327 336 35 14 chr3 136229178 136229320 -23370463 - Lx7 LINE L1 -524 7172 7028 3 1624 641 145 0 14 chr3 136230260 136230407 -23369376 + CT-rich Low_complexity Low_complexity 3 147 0 3 1624 182 62 0 30 chr3 136230418 136230451 -23369332 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 3 1624 3664 78 0 0 chr3 136230456 136230930 -23368853 - L1_Mus2 LINE L1 -1 6565 6092 3 1624 1112 114 6 0 chr3 136230930 136231106 -23368677 + (TTC)n Simple_repeat Simple_repeat 2 178 0 3 1624 5350 92 13 14 chr3 136231411 136232207 -23367576 - L1_Mur2 LINE L1 -659 5218 4424 3 1624 1718 181 16 3 chr3 136232207 136232523 -23367260 + Lx4A LINE L1 6739 7058 0 3 1624 515 216 113 89 chr3 136232552 136232717 -23367066 - B3A SINE B2 -14 184 8 3 1624 208 188 30 30 chr3 136232882 136232948 -23366835 + T-rich Low_complexity Low_complexity 4 69 0 3 1624 445 324 68 50 chr3 136233090 136233311 -23366472 + MIR SINE MIR 10 234 -28 3 1624 250 269 116 39 chr3 136233623 136233778 -23366005 - MLT1J LTR MaLR -26 486 320 3 1624 273 155 0 0 chr3 136235501 136235559 -23364224 + GA-rich Low_complexity Low_complexity 2 59 0 3 1624 511 324 133 27 chr3 136235593 136235856 -23363927 - B4A SINE B4 0 292 2 3 1624 7248 78 1 2 chr3 136235921 136237634 -23362149 + L1Md_F LINE L1 330 2040 -3843 3 1624 2975 83 0 10 chr3 136237647 136238060 -23361723 + L1Md_F2 LINE L1 6162 6570 -12 3 1624 204 292 0 0 chr3 136238194 136238242 -23361541 + (CA)n Simple_repeat Simple_repeat 1 48 0 3 1624 495 145 0 0 chr3 136238342 136238425 -23361358 + (TA)n Simple_repeat Simple_repeat 1 83 0 3 1624 1202 292 76 16 chr3 136238622 136239005 -23360778 + MTD LTR MaLR 13 418 -1 3 1624 1325 255 75 18 chr3 136241088 136241370 -23358413 - MTD LTR MaLR -13 406 102 3 1624 273 57 0 0 chr3 136241370 136241405 -23358378 + (CA)n Simple_repeat Simple_repeat 1 35 0 3 1624 1325 255 75 18 chr3 136241405 136241506 -23358277 - MTD LTR MaLR -318 101 1 3 1624 857 206 65 22 chr3 136242206 136242636 -23357147 + Lx7 LINE L1 7208 7696 0 3 1624 23 0 0 0 chr3 136242637 136242660 -23357123 + AT_rich Low_complexity Low_complexity 1 23 0 3 1624 21 0 0 0 chr3 136243092 136243113 -23356670 + AT_rich Low_complexity Low_complexity 1 21 0 3 1624 212 132 53 0 chr3 136243896 136243934 -23355849 + (TCTG)n Simple_repeat Simple_repeat 1 40 0 3 1624 462 36 0 0 chr3 136244180 136244236 -23355547 + (TAGA)n Simple_repeat Simple_repeat 2 57 0 3 1624 258 32 0 0 chr3 136244240 136244271 -23355512 + (TG)n Simple_repeat Simple_repeat 2 32 0 3 1624 908 132 0 7 chr3 136245393 136245546 -23354237 + (TTC)n Simple_repeat Simple_repeat 3 154 0 3 1624 4536 76 0 5 chr3 136245762 136246358 -23353425 - L1Md_F2 LINE L1 -12 6570 5978 3 1624 3168 39 15 0 chr3 136246358 136246823 -23352960 + L1Md_F2 LINE L1 5495 5966 -616 3 1624 2016 111 52 7 chr3 136248239 136248548 -23351235 - ORR1A2 LTR MaLR 0 327 5 3 1624 240 100 0 0 chr3 136248615 136248655 -23351128 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 3 1624 819 270 10 5 chr3 136248662 136248859 -23350924 + B3 SINE B2 1 198 -18 3 1624 850 288 0 42 chr3 136249115 136249329 -23350454 - B3 SINE B2 -6 210 6 3 1624 366 276 125 25 chr3 136249715 136249875 -23349908 + MTEa LTR MaLR 204 379 0 3 1624 1481 232 84 35 chr3 136250094 136250369 -23349414 - MTD LTR MaLR -14 405 124 3 1624 198 0 0 0 chr3 136250369 136250391 -23349392 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 3 1624 1481 232 84 35 chr3 136250391 136250485 -23349298 - MTD LTR MaLR -296 123 19 3 1624 471 292 105 55 chr3 136250974 136251231 -23348552 + B4A SINE B4 4 273 -19 3 1624 261 280 45 27 chr3 136252331 136252441 -23347342 - MLT1B LTR MaLR -4 386 275 3 1624 577 316 60 67 chr3 136253521 136253915 -23345868 + MTEb-int LTR MaLR 1077 1473 -107 3 1624 341 258 31 10 chr3 136253950 136254048 -23345735 + MLT2B3 LTR ERVL 1 100 -454 3 1624 334 280 39 92 chr3 136254048 136254080 -23345703 + MTEb LTR MaLR 1 123 -256 3 1624 1129 69 7 0 chr3 136254080 136254224 -23345559 + B1_Mus1 SINE Alu 4 148 0 3 1624 344 296 85 25 chr3 136254968 136255086 -23344697 + Tigger7 DNA MER2_type 8 132 -2359 3 1624 850 304 55 19 chr3 136255212 136255521 -23344262 + Tigger7 DNA MER2_type 521 840 -1651 3 1624 307 292 99 86 chr3 136255570 136255660 -23344123 + Tigger7 DNA MER2_type 2268 2364 -127 3 1624 397 139 0 12 chr3 136255660 136255740 -23344043 - L1Md_F2 LINE L1 0 6582 6504 3 1624 307 292 99 86 chr3 136255740 136255870 -23343913 + Tigger7 DNA MER2_type 2365 2491 0 3 1624 1896 176 70 15 chr3 136256140 136256537 -23343246 - MTC LTR MaLR -2 419 1 3 1624 709 214 23 6 chr3 136256559 136256733 -23343050 - MTC-int LTR MaLR 0 1258 1082 3 1624 1317 208 58 66 chr3 136256984 136257346 -23342437 + Lx6 LINE L1 893 1207 -6521 3 1624 198 0 0 0 chr3 136257346 136257368 -23342415 + (CAAA)n Simple_repeat Simple_repeat 1 22 0 3 1624 10818 235 68 96 chr3 136257368 136259582 -23340201 + Lx6 LINE L1 1203 3526 -2357 3 1624 1708 237 34 80 chr3 136259582 136260118 -23339665 + RLTR11A LTR ERVK 1 511 -17 3 1624 10818 235 68 96 chr3 136260118 136261065 -23338718 + Lx6 LINE L1 3527 4522 -1361 3 1624 708 35 0 0 chr3 136261065 136261152 -23338631 + (TAGA)n Simple_repeat Simple_repeat 4 90 0 3 1624 10818 194 73 9 chr3 136261152 136262995 -23336788 + Lx6 LINE L1 4517 6752 -708 3 1624 667 83 41 0 chr3 136262995 136263116 -23336667 + (TAGA)n Simple_repeat Simple_repeat 2 127 0 3 1624 1010 273 40 32 chr3 136263116 136263238 -23336545 + Lx6 LINE L1 6753 6868 -592 3 1624 4437 215 34 30 chr3 136263240 136264225 -23335558 - MTC-int LTR MaLR -270 988 1 3 1624 495 191 0 0 chr3 136264230 136264319 -23335464 - MTC LTR MaLR 0 421 333 3 1624 327 339 89 21 chr3 136265555 136265745 -23334038 - ERVL-E-int LTR ERVL -1965 3702 3500 3 1624 236 288 160 17 chr3 136265907 136266200 -23333583 + L1M5 LINE L1 3776 4110 -2036 3 1624 329 316 29 14 chr3 136266267 136266405 -23333378 + B1F1 SINE Alu 1 140 -9 3 1624 447 335 29 17 chr3 136266493 136266666 -23333117 + Tigger5 DNA MER2_type 22 196 -2210 3 1624 1744 259 63 4 chr3 136267426 136267888 -23331895 + Lx6 LINE L1 6947 7435 -25 3 1624 496 321 30 42 chr3 136267909 136268042 -23331741 + B3A SINE B2 30 166 -32 3 1624 498 33 0 0 chr3 136268042 136268102 -23331681 + (CA)n Simple_repeat Simple_repeat 1 60 0 3 1624 496 321 30 42 chr3 136268102 136268134 -23331649 + B3A SINE B2 167 193 -5 3 1624 594 290 225 11 chr3 136268134 136268405 -23331378 + Lx8 LINE L1 6998 7335 -138 3 1624 1212 101 0 0 chr3 136268405 136268583 -23331200 + (GAA)n Simple_repeat Simple_repeat 2 179 0 3 1624 594 290 225 11 chr3 136268583 136268680 -23331103 + Lx8 LINE L1 7336 7444 -29 3 1624 203 262 0 0 chr3 136268933 136268994 -23330789 + A-rich Low_complexity Low_complexity 1 61 0 3 1624 1997 134 0 58 chr3 136269170 136269518 -23330265 - ORR1A4 LTR MaLR 0 329 2 3 1624 306 264 84 15 chr3 136269707 136269838 -23329945 + Lx7 LINE L1 7556 7695 -1 3 1624 797 304 78 19 chr3 136269860 136270131 -23329652 + B4 SINE B4 6 292 0 3 1624 474 204 123 18 chr3 136270252 136270422 -23329361 - MER57A-int LTR ERV1 -194 5993 5806 3 1624 513 0 0 0 chr3 136271524 136271581 -23328202 + (TAGA)n Simple_repeat Simple_repeat 2 58 0 3 1624 191 170 0 21 chr3 136271581 136271629 -23328154 + (TA)n Simple_repeat Simple_repeat 1 47 0 3 1624 21 57 0 0 chr3 136271707 136271742 -23328041 + AT_rich Low_complexity Low_complexity 1 35 0 3 1624 256 269 67 8 chr3 136271742 136271862 -23327921 + Charlie5 DNA MER1_type 2494 2620 -4 3 1624 821 237 234 37 chr3 136271890 136272240 -23327543 - MTD LTR MaLR 0 419 1 4 1624 209 222 0 0 chr3 136272366 136272411 -23327372 + T-rich Low_complexity Low_complexity 1 45 0 4 1624 1132 68 7 0 chr3 136274216 136274363 -23325420 + B1_Mus1 SINE Alu 1 148 0 4 1624 229 26 26 26 chr3 136274374 136274413 -23325370 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 4 1624 372 257 38 131 chr3 136275364 136275596 -23324187 + MTEa LTR MaLR 113 352 -27 4 1624 226 235 44 0 chr3 136275715 136275783 -23324000 - L1M5 LINE L1 -229 5895 5825 4 1624 225 226 49 99 chr3 136276222 136276384 -23323399 - Zaphod DNA Tip100 -351 3680 3527 4 1624 267 213 0 0 chr3 136276395 136276470 -23323313 + (TTG)n Simple_repeat Simple_repeat 1 75 0 4 1624 230 288 0 0 chr3 136276694 136276753 -23323030 + CT-rich Low_complexity Low_complexity 5 63 0 4 1624 348 381 13 32 chr3 136277256 136277413 -23322370 + RSINE1 SINE B4 2 155 -10 4 1624 28 0 0 0 chr3 136277421 136277449 -23322334 + AT_rich Low_complexity Low_complexity 1 28 0 4 1624 495 0 0 0 chr3 136277512 136277567 -23322216 + (TA)n Simple_repeat Simple_repeat 2 56 0 4 1624 36745 38 2 1 chr3 136277567 136283481 -23316302 - L1Md_A LINE L1 -5 6580 563 4 1624 830 168 0 0 chr3 136283474 136283623 -23316160 - L1Md_A LINE L1 -6282 337 189 4 1624 989 322 19 11 chr3 136284802 136285066 -23314717 - MTEa LTR MaLR -113 266 1 4 1624 762 304 98 42 chr3 136285695 136286166 -23313617 + Lx9 LINE L1 6913 7409 -235 4 1624 348 127 0 0 chr3 136286191 136286246 -23313537 + (CATATA)n Simple_repeat Simple_repeat 3 57 0 4 1624 248 236 35 98 chr3 136286314 136286488 -23313295 - Lx9 LINE L1 0 7644 7482 4 1624 582 186 0 0 chr3 136286510 136286607 -23313176 - MT2A LTR ERVL -74 459 363 4 1624 21 0 0 0 chr3 136286624 136286645 -23313138 + AT_rich Low_complexity Low_complexity 1 21 0 4 1624 295 293 22 39 chr3 136286742 136286923 -23312860 + L1MC LINE L1 4942 5119 -1027 4 1624 392 262 15 157 chr3 136287054 136287196 -23312587 + L1_Mur2 LINE L1 4000 4117 -1760 4 1624 1106 221 10 0 chr3 136287196 136287400 -23312383 + B3 SINE B2 1 206 -10 4 1624 392 262 15 157 chr3 136287400 136287524 -23312259 + L1_Mur2 LINE L1 4118 4228 -1649 4 1624 524 288 167 27 chr3 136287535 136287977 -23311806 + L1MA4A LINE L1 5411 5914 -386 4 1624 195 204 0 0 chr3 136288018 136288072 -23311711 + (CA)n Simple_repeat Simple_repeat 1 54 0 4 1624 1005 307 56 19 chr3 136288110 136288542 -23311241 + Lx8 LINE L1 6879 7326 -147 4 1624 610 284 69 15 chr3 136288702 136288963 -23310820 + L1MC1 LINE L1 5924 6198 -135 4 1624 30 27 0 0 chr3 136289109 136289146 -23310637 + AT_rich Low_complexity Low_complexity 1 37 0 4 1624 305 250 79 0 chr3 136289266 136289342 -23310441 + MLT1D LTR MaLR 1 82 -423 4 1624 378 320 105 47 chr3 136289400 136289590 -23310193 + B4A SINE B4 7 207 -85 4 1624 441 0 0 0 chr3 136289734 136289783 -23310000 + (TG)n Simple_repeat Simple_repeat 2 50 0 4 1624 492 18 0 0 chr3 136289825 136289882 -23309901 + (CA)n Simple_repeat Simple_repeat 2 58 0 4 1624 679 281 112 17 chr3 136290219 136290648 -23309135 + L1MB7 LINE L1 5694 6168 -16 4 1624 664 258 128 77 chr3 136290928 136291201 -23308582 + B4A SINE B4 6 292 0 4 1624 732 270 88 16 chr3 136291506 136291826 -23307957 + Lx7 LINE L1 6989 7331 -365 4 1624 357 276 211 26 chr3 136293386 136293613 -23306170 - LTR40b LTR ERVL 0 462 194 4 1624 698 159 166 37 chr3 136294229 136294392 -23305391 + URR1A DNA MER1_type 1 184 -42 4 1624 1233 67 5 58 chr3 136294437 136294627 -23305156 - B2_Mm2 SINE B2 -14 181 2 4 1624 212 212 164 117 chr3 136295471 136295578 -23304205 + ID_B1 SINE B4 1 123 -101 4 1624 180 0 0 0 chr3 136295578 136295598 -23304185 + (TTCTC)n Simple_repeat Simple_repeat 2 21 0 4 1624 212 212 164 117 chr3 136295605 136295618 -23304165 + ID_B1 SINE B4 124 134 -90 4 1624 244 215 30 30 chr3 136297137 136297204 -23302579 + MER5A DNA MER1_type 30 96 -93 4 1624 265 370 88 15 chr3 136297286 136297423 -23302360 - MER5A DNA MER1_type -2 187 41 4 1624 542 87 0 12 chr3 136297473 136297555 -23302228 + (TCTCCC)n Simple_repeat Simple_repeat 4 84 0 4 1624 219 36 0 0 chr3 136297555 136297583 -23302200 + (CA)n Simple_repeat Simple_repeat 1 28 0 4 1624 7973 179 108 23 chr3 136297602 136298399 -23301384 + L1_Mur2 LINE L1 2063 2851 -3026 4 1624 3428 20 5 2 chr3 136298399 136298794 -23300989 - MTA_Mm LTR MaLR 0 396 1 4 1624 7973 179 108 23 chr3 136298794 136300033 -23299750 + L1_Mur2 LINE L1 2852 4273 -1604 4 1624 468 0 0 0 chr3 136300033 136300085 -23299698 + (CA)n Simple_repeat Simple_repeat 1 52 0 4 1624 1522 209 94 28 chr3 136300094 136300562 -23299221 + Lx6 LINE L1 5782 6280 -1180 4 1624 1932 277 106 38 chr3 136300555 136300608 -23299175 + Lx6 LINE L1 6516 6569 -891 4 1624 4611 61 2 12 chr3 136300608 136301208 -23298575 + L1_Mus2 LINE L1 5973 6566 0 4 1624 1932 277 106 38 chr3 136301208 136301995 -23297788 + Lx6 LINE L1 6570 7412 -48 4 1624 7512 70 11 0 chr3 136301992 136303429 -23296354 + L1_Mus1 LINE L1 5113 6567 0 4 1624 21 0 0 0 chr3 136304675 136304696 -23295087 + AT_rich Low_complexity Low_complexity 1 21 0 4 1624 22 80 0 0 chr3 136305582 136305632 -23294151 + AT_rich Low_complexity Low_complexity 1 50 0 4 1624 2350 168 38 9 chr3 136306100 136306551 -23293232 - Lx2 LINE L1 0 6997 6534 4 1624 352 318 123 23 chr3 136306797 136307016 -23292767 - RMER20B LTR ERVK -242 385 145 4 1624 28 29 0 0 chr3 136307798 136307833 -23291950 + AT_rich Low_complexity Low_complexity 1 35 0 4 1624 4634 271 39 19 chr3 136308103 136309595 -23290188 + Lx7 LINE L1 5809 7330 -366 4 1624 276 235 126 10 chr3 136309834 136309937 -23289846 - L1_Rod LINE L1 -2816 3031 2917 4 1624 580 242 36 22 chr3 136309933 136310129 -23289654 + L1M2 LINE L1 3574 3773 -2373 4 1624 1259 286 66 20 chr3 136310132 136310524 -23289259 - MTD LTR MaLR -9 410 1 4 1624 774 235 107 12 chr3 136310527 136310796 -23288987 + L1_Rod LINE L1 3734 4023 -1857 4 1624 323 291 49 10 chr3 136311053 136311258 -23288525 + L1ME3B LINE L1 5784 5996 -244 4 1624 6696 65 0 15 chr3 136311675 136312563 -23287220 + L1Md_F2 LINE L1 5708 6582 0 4 1624 292 296 0 0 chr3 136312719 136312800 -23286983 - MER2B DNA MER2_type -78 258 178 4 1624 257 326 35 92 chr3 136313743 136313885 -23285898 - ORR1D2 LTR MaLR -230 140 7 4 1624 939 342 144 77 chr3 136313866 136314382 -23285401 - ORR1D2-int LTR MaLR -28 1552 994 4 1624 544 242 33 108 chr3 136314382 136314595 -23285188 - B3A SINE B2 0 198 2 4 1624 939 342 144 77 chr3 136314595 136314844 -23284939 - ORR1D2-int LTR MaLR -587 993 736 4 1625 180 0 0 0 chr3 136314883 136314903 -23284880 + (A)n Simple_repeat Simple_repeat 1 20 0 4 1625 522 0 0 0 chr3 136315054 136315112 -23284671 + (TG)n Simple_repeat Simple_repeat 2 59 0 4 1625 494 268 24 24 chr3 136315119 136315245 -23284538 - RSINE1 SINE B4 -38 127 2 4 1625 577 299 70 14 chr3 136315386 136315684 -23284099 - ORR1D2-int LTR MaLR -988 382 68 4 1625 801 269 0 66 chr3 136315688 136315899 -23283884 + B3A SINE B2 2 198 0 4 1625 323 197 0 16 chr3 136315923 136315985 -23283798 - ORR1D2-int LTR MaLR -1503 77 17 4 1625 288 358 49 0 chr3 136316485 136316608 -23283175 - MIRb SINE MIR -51 217 89 4 1625 249 289 94 19 chr3 136317050 136317156 -23282627 + LTR16A1 LTR ERVL 253 366 -90 4 1625 376 286 50 38 chr3 136317664 136317824 -23281959 - Charlie2a DNA MER1_type -1211 1650 1489 4 1625 315 299 79 36 chr3 136318413 136318691 -23281092 - L1MC1 LINE L1 -10 6323 6034 4 1625 244 354 0 24 chr3 136319077 136319161 -23280622 + MLT1A1 LTR MaLR 313 394 -14 4 1625 329 255 219 0 chr3 136319175 136319371 -23280412 - L1MC1 LINE L1 -386 5947 5709 4 1625 252 0 0 0 chr3 136319598 136319626 -23280157 + (T)n Simple_repeat Simple_repeat 1 28 0 4 1625 583 212 7 7 chr3 136320415 136320562 -23279221 + GA-rich Low_complexity Low_complexity 4 150 0 4 1625 670 301 30 10 chr3 136321045 136321243 -23278540 - MLT2C1 LTR ERVL -195 202 1 4 1625 206 182 0 22 chr3 136321418 136321463 -23278320 + (TA)n Simple_repeat Simple_repeat 1 44 0 4 1625 904 328 56 80 chr3 136321556 136322392 -23277391 - Lx8 LINE L1 -5 7468 6653 4 1625 267 246 0 0 chr3 136322393 136322458 -23277325 - Lx8 LINE L1 -1001 6472 6408 4 1625 390 346 37 51 chr3 136322943 136323159 -23276624 + MLT1I LTR MaLR 10 222 -189 4 1625 193 296 141 0 chr3 136324576 136324647 -23275136 - L2b LINE L2 -1 3374 3294 4 1625 266 115 0 19 chr3 136324864 136324917 -23274866 + (TTTG)n Simple_repeat Simple_repeat 1 52 0 4 1625 1159 62 7 0 chr3 136324917 136325062 -23274721 - B1_Mus2 SINE Alu 0 147 2 4 1625 681 13 0 0 chr3 136325062 136325140 -23274643 + (TTTC)n Simple_repeat Simple_repeat 2 79 0 4 1625 190 143 0 39 chr3 136325549 136325600 -23274183 + A-rich Low_complexity Low_complexity 1 49 0 4 1625 221 299 149 0 chr3 136325713 136325847 -23273936 + L2a LINE L2 3265 3418 -8 4 1625 297 145 0 0 chr3 136326527 136326589 -23273194 + (TC)n Simple_repeat Simple_repeat 2 63 0 4 1625 1348 243 40 16 chr3 136326656 136327036 -23272747 - Lx7 LINE L1 -264 7432 7044 4 1625 980 318 167 18 chr3 136327075 136328162 -23271621 + L1M2 LINE L1 2197 3446 -2434 4 1625 798 282 10 49 chr3 136328184 136328389 -23271394 + ID_B1 SINE B4 6 202 -22 4 1625 565 284 92 4 chr3 136328436 136328698 -23271085 + L1M2 LINE L1 3495 3779 -2364 4 1625 188 200 20 0 chr3 136328822 136328872 -23270911 + (CTTA)n Simple_repeat Simple_repeat 2 52 0 4 1625 1809 249 14 29 chr3 136328898 136329315 -23270468 - MTD LTR MaLR -8 411 1 4 1625 2359 92 3 52 chr3 136329432 136329776 -23270007 + ORR1A2 LTR MaLR 1 327 0 4 1625 207 100 0 0 chr3 136330869 136330899 -23268884 + (CA)n Simple_repeat Simple_repeat 2 31 0 4 1625 656 148 0 0 chr3 136331735 136331843 -23267940 - B1_Mur4 SINE Alu -32 118 11 4 1625 207 0 0 0 chr3 136332042 136332065 -23267718 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 4 1625 344 85 0 0 chr3 136332065 136332112 -23267671 - B1_Mm SINE Alu -8 139 93 4 1625 326 290 30 0 chr3 136332983 136333114 -23266669 + G-rich Low_complexity Low_complexity 3 137 0 4 1625 251 227 11 33 chr3 136333208 136333299 -23266484 + (CGG)n Simple_repeat Simple_repeat 3 91 0 4 1625 234 208 27 14 chr3 136333580 136333653 -23266130 + (CGG)n Simple_repeat Simple_repeat 2 75 0 4 1625 204 88 59 0 chr3 136334047 136334081 -23265702 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 4 1625 22 70 0 0 chr3 136334132 136334175 -23265608 + GC_rich Low_complexity Low_complexity 1 43 0 5 1625 29 28 0 0 chr3 136334478 136334514 -23265269 + GC_rich Low_complexity Low_complexity 1 36 0 5 1625 549 0 0 0 chr3 136335050 136335111 -23264672 + (TG)n Simple_repeat Simple_repeat 1 61 0 5 1625 216 97 0 0 chr3 136335308 136335339 -23264444 + (CGTG)n Simple_repeat Simple_repeat 1 31 0 5 1625 27 29 0 0 chr3 136336229 136336263 -23263520 + AT_rich Low_complexity Low_complexity 1 34 0 5 1625 22 35 0 0 chr3 136336827 136336856 -23262927 + AT_rich Low_complexity Low_complexity 1 29 0 5 1625 303 234 64 27 chr3 136336959 136337069 -23262714 - PB1D10 SINE Alu -1 116 3 5 1625 219 269 30 61 chr3 136336982 136337081 -23262702 - ID_B1 SINE B4 -53 171 76 5 1625 1295 56 0 14 chr3 136340269 136340486 -23259297 + (TG)n Simple_repeat Simple_repeat 1 214 0 5 1625 249 33 0 0 chr3 136340505 136340535 -23259248 + (TG)n Simple_repeat Simple_repeat 1 30 0 5 1625 26 30 0 0 chr3 136341119 136341152 -23258631 + AT_rich Low_complexity Low_complexity 1 33 0 5 1625 330 26 0 0 chr3 136341413 136341452 -23258331 + (TG)n Simple_repeat Simple_repeat 2 40 0 5 1625 189 0 0 0 chr3 136341752 136341773 -23258010 + (T)n Simple_repeat Simple_repeat 1 21 0 5 1625 1298 182 0 13 chr3 136342049 136342277 -23257506 + URR1B DNA MER1_type 1 225 0 5 1625 281 274 0 0 chr3 136342660 136342733 -23257050 + ID4 SINE ID 3 75 -8 5 1625 368 69 20 0 chr3 136343284 136343346 -23256437 + B1_Mus2 SINE Alu 86 149 0 5 1625 388 0 39 0 chr3 136343934 136343986 -23255797 + (TTTTA)n Simple_repeat Simple_repeat 2 55 0 5 1625 672 217 195 27 chr3 136345550 136345735 -23254048 - B3 SINE B2 0 216 1 5 1625 423 183 0 0 chr3 136346240 136346322 -23253461 + GA-rich Low_complexity Low_complexity 1 82 0 5 1625 315 0 0 0 chr3 136346450 136346485 -23253298 + (TG)n Simple_repeat Simple_repeat 1 35 0 5 1625 243 0 0 0 chr3 136346485 136346511 -23253272 + (GA)n Simple_repeat Simple_repeat 1 27 0 5 1625 684 200 50 7 chr3 136346802 136346943 -23252840 + B1_Mur2 SINE Alu 2 148 -1 5 1625 198 167 0 0 chr3 136346943 136346979 -23252804 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 5 1625 601 300 15 10 chr3 136347952 136348154 -23251629 - ID_B1 SINE B4 -16 208 6 5 1625 315 105 0 0 chr3 136349286 136349343 -23250440 + (CA)n Simple_repeat Simple_repeat 2 58 0 5 1625 297 0 0 0 chr3 136349343 136349375 -23250408 + (GA)n Simple_repeat Simple_repeat 2 34 0 5 1625 464 262 24 16 chr3 136349493 136349617 -23250166 + B4A SINE B4 6 130 -162 5 1625 399 354 7 7 chr3 136350334 136350479 -23249304 - B3A SINE B2 -16 182 38 5 1625 590 283 49 0 chr3 136350501 136350706 -23249077 - ID_B1 SINE B4 -9 215 1 5 1625 373 274 0 59 chr3 136352160 136352261 -23247522 + B1_Mm SINE Alu 48 142 -5 5 1625 1230 54 0 0 chr3 136352548 136352695 -23247088 - B1_Mus1 SINE Alu 0 148 2 5 1625 296 167 0 29 chr3 136352776 136352844 -23246939 + GA-rich Low_complexity Low_complexity 5 70 0 5 1625 216 300 17 0 chr3 136352961 136353021 -23246762 - PB1D10 SINE Alu -42 75 15 5 1625 396 0 0 0 chr3 136353180 136353224 -23246559 + (TG)n Simple_repeat Simple_repeat 2 45 0 5 1625 1331 97 43 0 chr3 136353239 136353425 -23246358 - B2_Mm2 SINE B2 0 195 2 5 1625 231 114 0 0 chr3 136355200 136355235 -23244548 + (T)n Simple_repeat Simple_repeat 1 35 0 5 1625 341 333 75 34 chr3 136356604 136356960 -23242823 - MTEa LTR MaLR 0 379 4 5 1625 2872 78 0 5 chr3 136357514 136357888 -23241895 + Lx2 LINE L1 6274 6645 -352 5 1625 978 138 161 15 chr3 136357886 136358085 -23241698 + Lx LINE L1 6427 6654 0 5 1625 375 23 0 0 chr3 136358651 136358695 -23241088 + (TG)n Simple_repeat Simple_repeat 1 44 0 5 1625 596 213 78 20 chr3 136358723 136358812 -23240971 - RLTR20A1 LTR ERVK -7 544 459 5 1625 498 33 0 0 chr3 136358812 136358872 -23240911 + (CA)n Simple_repeat Simple_repeat 2 61 0 5 1625 596 213 78 20 chr3 136358872 136358935 -23240848 - RLTR20A1 LTR ERVK -93 458 385 5 1625 917 199 75 68 chr3 136358940 136359220 -23240563 - RLTR20A1 LTR ERVK -252 282 1 5 1625 225 65 0 0 chr3 136359763 136359794 -23239989 + (T)n Simple_repeat Simple_repeat 1 31 0 5 1625 302 399 19 5 chr3 136360257 136360471 -23239312 + MLT1J LTR MaLR 88 304 -208 5 1625 199 346 13 0 chr3 136360817 136360895 -23238888 + MIRc SINE MIR 66 144 -124 5 1625 524 305 94 12 chr3 136360916 136361235 -23238548 - MLT1A0 LTR MaLR -18 347 3 5 1625 533 333 55 27 chr3 136361274 136361493 -23238290 + MER2 DNA MER2_type 121 345 0 5 1625 246 62 0 0 chr3 136361556 136361588 -23238195 + (TTTA)n Simple_repeat Simple_repeat 3 34 0 5 1625 261 83 0 0 chr3 136362241 136362277 -23237506 + (TG)n Simple_repeat Simple_repeat 1 36 0 5 1625 1111 83 0 7 chr3 136362299 136362445 -23237338 + B1_Mus2 SINE Alu 1 145 -2 5 1625 572 111 0 10 chr3 136362446 136362546 -23237237 + (GAAA)n Simple_repeat Simple_repeat 2 100 0 5 1625 284 254 133 53 chr3 136362574 136362642 -23237141 - B4 SINE B4 -5 287 210 5 1625 486 0 0 0 chr3 136362642 136362696 -23237087 + (TC)n Simple_repeat Simple_repeat 2 55 0 5 1625 284 254 133 53 chr3 136362696 136362777 -23237006 - B4 SINE B4 -83 209 126 5 1625 294 158 0 106 chr3 136362777 136362947 -23236836 + (TCTCTG)n Simple_repeat Simple_repeat 1 152 0 5 1625 276 303 115 62 chr3 136362947 136363077 -23236706 - B4 SINE B4 -149 143 7 5 1625 1620 121 52 0 chr3 136363846 136364118 -23235665 + RLTR15 LTR ERVK 74 359 0 5 1625 2547 135 71 18 chr3 136364444 136364882 -23234901 - Lx2B LINE L1 -4 6996 6536 5 1625 297 0 0 0 chr3 136365664 136365697 -23234086 + (TTTTTG)n Simple_repeat Simple_repeat 2 34 0 5 1625 21 0 0 0 chr3 136366223 136366244 -23233539 + AT_rich Low_complexity Low_complexity 1 21 0 5 1625 639 71 0 0 chr3 136366288 136366373 -23233410 + (TC)n Simple_repeat Simple_repeat 2 86 0 5 1625 213 39 0 0 chr3 136366647 136366673 -23233110 + (TTA)n Simple_repeat Simple_repeat 2 27 0 5 1625 267 31 0 0 chr3 136367386 136367418 -23232365 + (TTG)n Simple_repeat Simple_repeat 2 33 0 5 1625 450 0 0 0 chr3 136369007 136369057 -23230726 + (TAGA)n Simple_repeat Simple_repeat 1 50 0 5 1625 1195 149 51 9 chr3 136369568 136369785 -23229998 + URR1A DNA MER1_type 1 226 0 5 1625 329 323 97 0 chr3 136371697 136371821 -23227962 + RSINE1 SINE B4 1 136 -29 5 1625 231 36 0 0 chr3 136371833 136371861 -23227922 + (CA)n Simple_repeat Simple_repeat 2 29 0 5 1625 239 237 91 58 chr3 136371876 136371997 -23227786 + Lx7 LINE L1 5782 5906 -1790 5 1625 272 280 0 26 chr3 136374027 136374104 -23225679 - ID4 SINE ID -4 79 5 5 1625 225 204 0 0 chr3 136374153 136374197 -23225586 + A-rich Low_complexity Low_complexity 1 44 0 5 1625 22 0 0 0 chr3 136374343 136374365 -23225418 + AT_rich Low_complexity Low_complexity 1 22 0 5 1625 249 305 21 0 chr3 136374557 136374652 -23225131 + RMER30 DNA MER1_type 105 201 -1 5 1625 659 287 19 19 chr3 136374863 136375069 -23224714 + B3 SINE B2 1 206 -10 5 1625 432 0 0 0 chr3 136376845 136376893 -23222890 + (TTG)n Simple_repeat Simple_repeat 2 49 0 5 1625 882 143 0 0 chr3 136376895 136377042 -23222741 + (TCTCCC)n Simple_repeat Simple_repeat 4 150 0 5 1625 297 183 0 0 chr3 136378014 136378074 -23221709 + T-rich Low_complexity Low_complexity 1 60 0 5 1625 472 326 14 0 chr3 136382686 136382824 -23216959 + RSINE1 SINE B4 3 142 -23 5 1625 537 80 0 0 chr3 136383631 136383706 -23216077 + (TG)n Simple_repeat Simple_repeat 2 76 0 5 1625 369 0 0 0 chr3 136385218 136385259 -23214524 + (T)n Simple_repeat Simple_repeat 1 41 0 5 1625 229 213 0 0 chr3 136386443 136386490 -23213293 + (CAA)n Simple_repeat Simple_repeat 1 47 0 5 1625 4881 99 14 11 chr3 136389443 136390267 -23209516 - RLTR13D2 LTR ERVK 0 1023 2 5 1625 28 29 0 0 chr3 136390268 136390303 -23209480 + AT_rich Low_complexity Low_complexity 1 35 0 5 1625 237 253 40 13 chr3 136390599 136390675 -23209108 - L1MA5 LINE L1 -23 6277 6200 5 1625 522 31 0 0 chr3 136391352 136391416 -23208367 + (TCCC)n Simple_repeat Simple_repeat 4 67 0 5 1625 446 311 52 75 chr3 136391583 136391757 -23208026 - B4 SINE B4 -121 171 2 5 1625 291 203 0 0 chr3 136393594 136393663 -23206120 + (TG)n Simple_repeat Simple_repeat 2 70 0 5 1625 297 0 0 0 chr3 136395096 136395129 -23204654 + (TC)n Simple_repeat Simple_repeat 1 33 0 5 1625 543 31 0 0 chr3 136395129 136395193 -23204590 + (CA)n Simple_repeat Simple_repeat 1 65 0 5 1625 358 196 11 11 chr3 136395302 136395395 -23204388 + GA-rich Low_complexity Low_complexity 4 96 0 5 1625 633 249 35 61 chr3 136397056 136397253 -23202530 - B3A SINE B2 -6 192 1 5 1625 24 53 0 0 chr3 136397458 136397496 -23202287 + AT_rich Low_complexity Low_complexity 1 38 0 5 1625 1078 64 0 0 chr3 136399645 136399786 -23199997 + B1_Mm SINE Alu 7 147 0 5 1625 205 191 0 0 chr3 136399787 136399829 -23199954 + A-rich Low_complexity Low_complexity 1 42 0 5 1625 665 168 8 0 chr3 136400385 136400516 -23199267 + (TA)n Simple_repeat Simple_repeat 2 133 0 5 1625 387 165 0 0 chr3 136400524 136400609 -23199174 + GA-rich Low_complexity Low_complexity 2 86 0 5 1625 624 97 0 0 chr3 136400870 136400963 -23198820 + (TA)n Simple_repeat Simple_repeat 1 93 0 5 1625 321 26 0 0 chr3 136400963 136401000 -23198783 + (GA)n Simple_repeat Simple_repeat 2 39 0 5 1625 318 98 0 0 chr3 136401270 136401321 -23198462 + (TG)n Simple_repeat Simple_repeat 2 52 0 5 1625 222 253 16 37 chr3 136401557 136401620 -23198163 - MER5B DNA MER1_type -66 123 67 5 1625 276 53 0 0 chr3 136402943 136402981 -23196802 + (TG)n Simple_repeat Simple_repeat 1 38 0 5 1625 474 261 28 35 chr3 136403217 136403360 -23196423 - RSINE1 SINE B4 -22 143 2 5 1625 219 392 13 39 chr3 136403732 136403886 -23195897 + MIRb SINE MIR 106 255 -13 5 1625 201 39 0 0 chr3 136404030 136404056 -23195727 + (TCCC)n Simple_repeat Simple_repeat 3 28 0 5 1625 806 169 12 0 chr3 136405046 136405206 -23194577 + CT-rich Low_complexity Low_complexity 3 164 0 6 1625 186 43 0 0 chr3 136405748 136405771 -23194012 + (TG)n Simple_repeat Simple_repeat 1 23 0 6 1625 372 77 0 0 chr3 136406430 136406482 -23193301 + (TG)n Simple_repeat Simple_repeat 1 52 0 6 1625 206 348 81 81 chr3 136407057 136407279 -23192504 + MIRb SINE MIR 15 236 -32 6 1625 207 69 0 0 chr3 136408676 136408705 -23191078 + (TTG)n Simple_repeat Simple_repeat 3 31 0 6 1625 317 43 43 0 chr3 136409153 136409199 -23190584 + (TCCCC)n Simple_repeat Simple_repeat 5 52 0 6 1625 208 128 51 0 chr3 136409485 136409524 -23190259 + (TCTG)n Simple_repeat Simple_repeat 2 42 0 6 1625 2057 323 58 17 chr3 136410133 136411287 -23188496 - L1_Mur3 LINE L1 -359 5521 4321 6 1625 422 276 14 5 chr3 136411383 136411557 -23188226 + Lx7 LINE L1 5589 5754 -1942 6 1625 351 228 0 0 chr3 136411558 136411650 -23188133 + (TG)n Simple_repeat Simple_repeat 2 93 0 6 1625 28 29 0 0 chr3 136412054 136412089 -23187694 + AT_rich Low_complexity Low_complexity 1 35 0 6 1625 267 185 21 21 chr3 136412677 136412695 -23187088 + (TTA)n Simple_repeat Simple_repeat 3 20 0 6 1625 183 42 0 0 chr3 136412695 136412719 -23187064 + (TAG)n Simple_repeat Simple_repeat 1 24 0 6 1625 267 185 21 21 chr3 136412719 136412794 -23186989 + (TTA)n Simple_repeat Simple_repeat 3 77 0 6 1625 192 40 0 0 chr3 136412949 136412974 -23186809 + (CAAA)n Simple_repeat Simple_repeat 4 28 0 6 1625 535 238 56 0 chr3 136414759 136414885 -23184898 + B1F1 SINE Alu 1 133 -16 6 1625 227 260 0 40 chr3 136414893 136414969 -23184814 + GA-rich Low_complexity Low_complexity 4 76 0 6 1625 1044 71 0 0 chr3 136416464 136416726 -23183057 + (TTCC)n Simple_repeat Simple_repeat 1 262 0 6 1625 389 194 0 14 chr3 136416726 136416799 -23182984 - B1_Mur2 SINE Alu -2 147 76 6 1625 279 227 0 154 chr3 136416731 136416809 -23182974 - B4 SINE B4 -72 220 155 6 1625 463 231 92 50 chr3 136416980 136417121 -23182662 + B1F SINE Alu 3 149 0 6 1625 198 0 0 0 chr3 136417996 136418018 -23181765 + (T)n Simple_repeat Simple_repeat 1 22 0 6 1625 180 167 0 0 chr3 136419541 136419571 -23180212 + MIR3 SINE MIR 179 208 0 6 1625 352 279 0 140 chr3 136420276 136420376 -23179407 + PB1D10 SINE Alu 5 90 -27 6 1625 374 180 22 0 chr3 136420420 136420509 -23179274 + (TATATG)n Simple_repeat Simple_repeat 2 92 0 6 1625 250 171 0 0 chr3 136420589 136420630 -23179153 + ID_B1 SINE B4 147 187 -37 6 1625 272 186 0 0 chr3 136420890 136420933 -23178850 - ID_B1 SINE B4 -35 189 147 6 1625 270 0 0 0 chr3 136420935 136420965 -23178818 + (TG)n Simple_repeat Simple_repeat 2 31 0 6 1625 259 350 49 49 chr3 136420967 136421090 -23178693 - RSINE1 SINE B4 -14 151 29 6 1625 648 0 0 0 chr3 136422900 136422972 -23176811 + (GA)n Simple_repeat Simple_repeat 2 73 0 6 1625 207 0 0 0 chr3 136423641 136423664 -23176119 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 6 1625 1462 77 16 5 chr3 136423945 136424129 -23175654 - B2_Mm2 SINE B2 -9 186 1 6 1625 344 291 55 17 chr3 136424201 136424338 -23175445 - B4 SINE B4 -113 179 34 6 1625 297 0 0 0 chr3 136425081 136425114 -23174669 + (TG)n Simple_repeat Simple_repeat 2 34 0 6 1625 232 230 26 26 chr3 136425319 136425395 -23174388 - Charlie2a DNA MER1_type -1292 1569 1494 6 1625 992 98 6 0 chr3 136426363 136426527 -23173256 + (CA)n Simple_repeat Simple_repeat 1 165 0 6 1625 730 275 46 31 chr3 136429264 136429459 -23170324 + B3A SINE B2 1 198 0 6 1625 400 315 6 22 chr3 136430125 136430307 -23169476 + (TG)n Simple_repeat Simple_repeat 1 179 0 6 1625 936 199 15 73 chr3 136430759 136430965 -23168818 - B3A SINE B2 -4 194 1 6 1625 638 247 46 40 chr3 136431405 136431578 -23168205 - B3A SINE B2 -24 174 1 6 1625 438 326 106 18 chr3 136431606 136431881 -23167902 - L2a LINE L2 -55 3371 3073 6 1625 201 211 19 19 chr3 136432503 136432556 -23167227 + GA-rich Low_complexity Low_complexity 1 53 0 6 1625 754 287 73 35 chr3 136433255 136433515 -23166268 + B4A SINE B4 1 270 -22 6 1625 542 41 14 0 chr3 136433517 136433590 -23166193 + (CA)n Simple_repeat Simple_repeat 1 74 0 6 1625 798 159 0 18 chr3 136434302 136434469 -23165314 + GA-rich Low_complexity Low_complexity 3 166 0 6 1625 805 302 16 91 chr3 136436452 136436835 -23162948 - ORR1D2 LTR MaLR -12 358 5 6 1625 732 83 0 0 chr3 136437843 136437952 -23161831 + (TG)n Simple_repeat Simple_repeat 2 110 0 6 1625 1186 95 0 0 chr3 136438304 136438451 -23161332 - B1_Mus2 SINE Alu 0 147 1 6 1625 437 292 40 27 chr3 136438451 136438599 -23161184 - B4A SINE B4 -61 231 82 6 1625 507 134 0 0 chr3 136438601 136438683 -23161100 + (T)n Simple_repeat Simple_repeat 1 82 0 6 1625 186 43 0 0 chr3 136438900 136438923 -23160860 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 6 1625 730 94 17 0 chr3 136439171 136439288 -23160495 + (TTCC)n Simple_repeat Simple_repeat 3 121 0 6 1625 261 186 22 44 chr3 136439270 136439360 -23160423 + CT-rich Low_complexity Low_complexity 1 88 0 6 1625 286 234 16 0 chr3 136439381 136439445 -23160338 - B1F SINE Alu -6 143 79 6 1625 471 202 0 0 chr3 136441769 136441868 -23157915 + (TA)n Simple_repeat Simple_repeat 2 100 0 6 1625 383 348 36 69 chr3 136442030 136442277 -23157506 - B4A SINE B4 -51 241 3 6 1625 209 57 29 0 chr3 136442354 136442389 -23157394 + (TTTTTG)n Simple_repeat Simple_repeat 1 36 0 6 1625 261 83 0 0 chr3 136443010 136443046 -23156737 + (T)n Simple_repeat Simple_repeat 1 36 0 6 1625 323 297 75 55 chr3 136443094 136443240 -23156543 - MIRb SINE MIR -8 260 112 6 1625 405 0 0 0 chr3 136444745 136444790 -23154993 + (TG)n Simple_repeat Simple_repeat 1 45 0 6 1626 204 282 0 0 chr3 136446378 136446449 -23153334 + A-rich Low_complexity Low_complexity 1 71 0 6 1626 21 0 0 0 chr3 136447150 136447171 -23152612 + AT_rich Low_complexity Low_complexity 1 21 0 6 1626 378 0 0 0 chr3 136447858 136447900 -23151883 + (CA)n Simple_repeat Simple_repeat 2 43 0 6 1626 704 215 22 0 chr3 136448249 136448384 -23151399 + B3 SINE B2 4 141 -75 6 1626 638 200 161 0 chr3 136448485 136448615 -23151168 - RSINE1 SINE B4 -12 153 3 6 1626 39 0 0 0 chr3 136449898 136449937 -23149846 + AT_rich Low_complexity Low_complexity 1 39 0 6 1626 353 344 30 78 chr3 136450271 136450438 -23149345 - RSINE1 SINE B4 0 165 7 6 1626 25 0 0 0 chr3 136450622 136450647 -23149136 + AT_rich Low_complexity Low_complexity 1 25 0 6 1626 265 284 0 15 chr3 136452698 136452766 -23147017 + GA-rich Low_complexity Low_complexity 4 70 0 6 1626 380 111 0 16 chr3 136452853 136452917 -23146866 + (TA)n Simple_repeat Simple_repeat 2 64 0 6 1626 444 37 0 0 chr3 136452956 136453010 -23146773 + (TG)n Simple_repeat Simple_repeat 1 54 0 6 1626 23 68 0 0 chr3 136454066 136454110 -23145673 + AT_rich Low_complexity Low_complexity 1 44 0 6 1626 731 261 121 71 chr3 136454169 136454507 -23145276 + ORR1E LTR MaLR 3 357 -2 6 1626 411 21 0 0 chr3 136454945 136454993 -23144790 + (TG)n Simple_repeat Simple_repeat 2 49 0 6 1626 618 291 8 28 chr3 136454998 136455166 -23144617 - B3A SINE B2 -46 170 6 6 1626 425 248 0 37 chr3 136456701 136456810 -23142973 + RSINE1 SINE B4 23 127 -38 6 1626 244 350 128 16 chr3 136456810 136456826 -23142957 + B3A SINE B2 22 160 -38 6 1626 621 106 0 0 chr3 136456835 136456948 -23142835 + (CA)n Simple_repeat Simple_repeat 2 114 0 6 1626 183 129 0 0 chr3 136457286 136457317 -23142466 + (CAA)n Simple_repeat Simple_repeat 2 32 0 6 1626 237 187 0 0 chr3 136457476 136457551 -23142232 + (CAAA)n Simple_repeat Simple_repeat 2 76 0 6 1626 221 250 118 0 chr3 136457552 136457628 -23142155 + PB1D9 SINE Alu 36 120 0 6 1626 189 0 0 0 chr3 136457628 136457649 -23142134 + (A)n Simple_repeat Simple_repeat 1 21 0 6 1626 364 296 24 106 chr3 136457690 136457860 -23141923 - B4 SINE B4 -1 291 136 6 1626 231 293 73 13 chr3 136458532 136458678 -23141105 - MIRb SINE MIR -76 192 32 6 1626 25 31 0 0 chr3 136459312 136459344 -23140439 + AT_rich Low_complexity Low_complexity 1 32 0 6 1626 228 261 15 0 chr3 136459424 136459489 -23140294 + (TATG)n Simple_repeat Simple_repeat 2 67 0 6 1626 418 306 87 25 chr3 136459492 136459767 -23140016 - B4A SINE B4 0 292 1 6 1626 603 71 0 0 chr3 136459795 136459880 -23139903 + (CA)n Simple_repeat Simple_repeat 1 85 0 6 1626 500 294 101 52 chr3 136459892 136460140 -23139643 - B4 SINE B4 -22 270 11 6 1626 495 348 17 6 chr3 136461222 136461401 -23138382 + MER5A DNA MER1_type 2 182 -7 6 1626 27 0 0 0 chr3 136461630 136461657 -23138126 + AT_rich Low_complexity Low_complexity 1 27 0 6 1626 698 283 184 29 chr3 136462808 136463117 -23136666 - MLT1A0 LTR MaLR -8 357 1 6 1626 2236 138 145 11 chr3 136464119 136464553 -23135230 + RMER6D LTR ERVK 2 493 -227 6 1626 186 103 0 0 chr3 136464934 136464963 -23134820 + (A)n Simple_repeat Simple_repeat 1 29 0 6 1626 540 0 0 0 chr3 136466103 136466163 -23133620 + (CA)n Simple_repeat Simple_repeat 2 61 0 6 1626 652 211 56 82 chr3 136466819 136467015 -23132768 - B3A SINE B2 -4 194 4 6 1626 235 179 15 15 chr3 136467489 136467557 -23132226 + (CATATA)n Simple_repeat Simple_repeat 6 73 0 6 1626 408 310 45 6 chr3 136467830 136467986 -23131797 + RSINE1 SINE B4 2 163 -2 6 1626 180 158 79 0 chr3 136468210 136468248 -23131535 - L3 LINE CR1 -1374 3115 3075 6 1626 3517 36 0 2 chr3 136468327 136468745 -23131038 - L1Md_F3 LINE L1 -14 6570 6154 6 1626 502 237 70 38 chr3 136468790 136468948 -23130835 + ERVL-B4-int LTR ERVL 4435 4597 -1117 7 1626 21 36 0 0 chr3 136470027 136470055 -23129728 + AT_rich Low_complexity Low_complexity 1 28 0 7 1626 2919 207 19 14 chr3 136470322 136470885 -23128898 + Lx5 LINE L1 6476 7041 -9 7 1626 279 0 0 0 chr3 136471381 136471412 -23128371 + (CA)n Simple_repeat Simple_repeat 2 32 0 7 1626 654 13 0 0 chr3 136471412 136471486 -23128297 + (GA)n Simple_repeat Simple_repeat 2 76 0 7 1626 331 308 20 101 chr3 136471809 136471901 -23127882 + B4 SINE B4 3 82 -210 7 1626 241 295 79 79 chr3 136471901 136472041 -23127742 + B1_Mus2 SINE Alu 1 140 -7 7 1626 240 329 37 37 chr3 136472452 136472534 -23127249 + MLT1J LTR MaLR 113 194 -318 7 1626 185 328 39 78 chr3 136473015 136473144 -23126639 + L2c LINE L2 3114 3237 -150 7 1626 505 296 11 63 chr3 136474009 136474200 -23125583 + B3A SINE B2 3 183 -15 7 1626 180 0 0 0 chr3 136474326 136474346 -23125437 + (CAA)n Simple_repeat Simple_repeat 2 21 0 7 1626 1129 69 7 0 chr3 136474363 136474507 -23125276 + B1_Mm SINE Alu 1 145 -2 7 1626 189 0 0 0 chr3 136474507 136474528 -23125255 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 7 1626 23 33 0 0 chr3 136476341 136476371 -23123412 + AT_rich Low_complexity Low_complexity 1 30 0 7 1626 377 303 28 0 chr3 136476461 136476578 -23123205 - B1F SINE Alu -24 123 5 7 1626 462 133 0 0 chr3 136478521 136478611 -23121172 + (TC)n Simple_repeat Simple_repeat 1 90 0 7 1626 324 48 0 0 chr3 136478611 136478653 -23121130 + (TG)n Simple_repeat Simple_repeat 1 42 0 7 1626 419 298 42 90 chr3 136478934 136479078 -23120705 + RSINE1 SINE B4 10 146 -19 7 1626 204 125 0 0 chr3 136479735 136479767 -23120016 + (CATA)n Simple_repeat Simple_repeat 4 35 0 7 1626 21 0 0 0 chr3 136480772 136480793 -23118990 + AT_rich Low_complexity Low_complexity 1 21 0 7 1626 234 168 66 0 chr3 136480820 136480957 -23118826 + (TA)n Simple_repeat Simple_repeat 1 146 0 7 1626 201 74 0 0 chr3 136480980 136481007 -23118776 + (CA)n Simple_repeat Simple_repeat 1 27 0 7 1626 354 98 0 0 chr3 136481998 136482049 -23117734 + (TCC)n Simple_repeat Simple_repeat 1 51 0 7 1626 956 276 164 13 chr3 136482333 136482645 -23117138 + MTEb LTR MaLR 1 359 -20 7 1626 915 80 0 0 chr3 136482743 136482868 -23116915 + (TC)n Simple_repeat Simple_repeat 2 126 0 7 1626 295 238 46 35 chr3 136483830 136483917 -23115866 + PB1D10 SINE Alu 22 109 -8 7 1626 249 180 0 0 chr3 136483947 136483997 -23115786 + (CA)n Simple_repeat Simple_repeat 1 50 0 7 1626 2472 197 40 16 chr3 136484693 136485193 -23114590 - RLTR18B LTR ERVK 0 512 1 7 1626 24 32 0 0 chr3 136486628 136486659 -23113124 + AT_rich Low_complexity Low_complexity 1 31 0 7 1626 459 0 0 0 chr3 136486880 136486931 -23112852 + (TG)n Simple_repeat Simple_repeat 1 51 0 7 1626 1524 137 130 0 chr3 136486934 136487218 -23112565 - ORR1A4 LTR MaLR -8 321 1 7 1626 212 77 0 25 chr3 136488415 136488455 -23111328 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 7 1626 1234 115 28 0 chr3 136488491 136488673 -23111110 + B2_Mm2 SINE B2 1 187 -8 7 1626 519 56 0 0 chr3 136488714 136488785 -23110998 + (TCTA)n Simple_repeat Simple_repeat 3 73 0 7 1626 665 82 2 3 chr3 136489849 136489953 -23109830 + B1_Mm SINE Alu 45 147 -2 7 1626 191 32 65 0 chr3 136489970 136490001 -23109782 + (CAAA)n Simple_repeat Simple_repeat 3 35 0 7 1626 229 293 11 89 chr3 136490810 136490900 -23108883 - LTR33B LTR ERVL -336 167 85 7 1626 212 77 0 25 chr3 136491826 136491866 -23107917 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 7 1626 290 26 26 0 chr3 136493395 136493434 -23106349 + (CA)n Simple_repeat Simple_repeat 2 41 0 7 1626 698 34 11 0 chr3 136493518 136493607 -23106176 + (CA)n Simple_repeat Simple_repeat 2 91 0 7 1626 525 32 0 0 chr3 136493695 136493758 -23106025 + (CA)n Simple_repeat Simple_repeat 2 64 0 7 1626 228 270 24 37 chr3 136493935 136494066 -23105717 + MIRc SINE MIR 91 228 -40 7 1626 207 203 0 0 chr3 136497261 136497320 -23102463 + G-rich Low_complexity Low_complexity 1 59 0 7 1626 609 212 0 0 chr3 136497990 136498169 -23101614 + (TG)n Simple_repeat Simple_repeat 1 179 0 7 1626 433 271 123 41 chr3 136498184 136498453 -23101330 - B4A SINE B4 0 292 2 7 1626 333 68 0 0 chr3 136498654 136498698 -23101085 + (TTTTC)n Simple_repeat Simple_repeat 2 45 0 7 1626 29 28 0 0 chr3 136499818 136499854 -23099929 + AT_rich Low_complexity Low_complexity 1 36 0 7 1626 975 93 0 0 chr3 136500365 136500527 -23099256 + (GA)n Simple_repeat Simple_repeat 1 162 0 1 1626 827 262 19 24 chr3 136500631 136500838 -23098945 + B3 SINE B2 11 216 0 2 1626 289 301 116 35 chr3 136500979 136501111 -23098672 - B3A SINE B2 -8 190 57 3 1626 216 0 0 0 chr3 136501111 136501135 -23098648 + (CAG)n Simple_repeat Simple_repeat 1 24 0 4 1626 289 301 116 35 chr3 136501135 136501174 -23098609 - B3A SINE B2 -142 56 6 3 1626 296 345 18 26 chr3 136501594 136501608 -23098175 + ID_B1 SINE B4 73 184 -40 5 1626 467 273 0 0 chr3 136501608 136501707 -23098076 + B1F SINE Alu 8 106 -43 6 1626 30 45 0 0 chr3 136501742 136501786 -23097997 + AT_rich Low_complexity Low_complexity 1 44 0 7 1626 360 250 29 20 chr3 136501993 136502095 -23097688 - PB1D10 SINE Alu -1 116 14 8 1626 537 317 72 18 chr3 136503750 136504026 -23095757 + B4A SINE B4 2 292 0 9 1626 378 0 0 0 chr3 136504033 136504075 -23095708 + (CA)n Simple_repeat Simple_repeat 2 43 0 1 1626 219 353 79 46 chr3 136504081 136504295 -23095488 + MIRb SINE MIR 19 248 -14 1 1626 200 289 56 37 chr3 136504694 136504802 -23094981 - L2 LINE L2 -1282 2137 2028 1 1626 22 56 0 0 chr3 136505147 136505183 -23094600 + AT_rich Low_complexity Low_complexity 1 36 0 1 1626 216 0 0 0 chr3 136505237 136505261 -23094522 + (TA)n Simple_repeat Simple_repeat 2 25 0 1 1626 454 292 49 16 chr3 136505262 136505384 -23094399 - ID_B1 SINE B4 -11 213 88 1 1626 389 216 89 22 chr3 136505832 136505922 -23093861 + PB1D10 SINE Alu 20 115 -2 1 1626 183 262 29 71 chr3 136506251 136506321 -23093462 - L2c LINE L2 -257 3130 3064 1 1626 183 400 19 39 chr3 136506707 136506811 -23092972 - L2c LINE L2 -838 2581 2480 1 1626 849 226 102 5 chr3 136507383 136507579 -23092204 - B3 SINE B2 -1 215 1 1 1626 257 172 0 33 chr3 136508087 136508147 -23091636 + CT-rich Low_complexity Low_complexity 4 61 0 1 1626 741 23 0 0 chr3 136508151 136508238 -23091545 + (TTTC)n Simple_repeat Simple_repeat 2 88 0 2 1626 435 252 7 69 chr3 136508259 136508411 -23091372 - B1F SINE Alu 0 149 9 2 1626 265 328 107 24 chr3 136508708 136508961 -23090822 - L3 LINE CR1 -2291 2198 1925 2 1626 297 0 0 0 chr3 136509080 136509113 -23090670 + (TTCA)n Simple_repeat Simple_repeat 2 34 0 2 1626 351 269 160 7 chr3 136509342 136509492 -23090291 + B4A SINE B4 116 288 -4 2 1626 570 15 0 0 chr3 136510610 136510677 -23089106 + (TG)n Simple_repeat Simple_repeat 2 68 0 2 1626 211 245 0 70 chr3 136511036 136511093 -23088690 + ID4 SINE ID 1 53 -30 2 1626 369 0 0 0 chr3 136511995 136512036 -23087747 + (CA)n Simple_repeat Simple_repeat 2 42 0 2 1626 292 360 48 0 chr3 136513294 136513419 -23086364 + Kanga1 DNA Tc2 119 249 -1496 2 1626 1166 81 0 0 chr3 136513545 136513693 -23086090 + B1_Mus1 SINE Alu 1 148 0 2 1626 342 0 0 0 chr3 136513703 136513741 -23086042 + (TA)n Simple_repeat Simple_repeat 1 38 0 3 1626 282 268 155 16 chr3 136515041 136515170 -23084613 + MIR SINE MIR 30 176 -86 3 1626 381 267 81 90 chr3 136515455 136515677 -23084106 - MLT1B LTR MaLR -126 264 45 3 1626 340 282 72 9 chr3 136518054 136518165 -23081618 - MIRb SINE MIR -65 203 86 3 1626 180 297 95 0 chr3 136518167 136518241 -23081542 + L2 LINE L2 2831 2911 -508 3 1626 192 143 0 0 chr3 136519561 136519603 -23080180 + (TG)n Simple_repeat Simple_repeat 1 42 0 3 1626 977 265 50 43 chr3 136519674 136519926 -23079857 + B4 SINE B4 10 267 -25 3 1626 968 140 210 0 chr3 136519926 136520112 -23079671 + URR1B DNA MER1_type 1 225 0 3 1626 977 265 50 43 chr3 136520112 136520139 -23079644 + B4 SINE B4 268 291 -1 3 1626 512 294 68 27 chr3 136520404 136520551 -23079232 - RSINE1 SINE B4 -2 163 11 3 1626 507 216 0 0 chr3 136520584 136520700 -23079083 + (TA)n Simple_repeat Simple_repeat 1 116 0 3 1626 213 39 0 0 chr3 136521438 136521464 -23078319 + (TTG)n Simple_repeat Simple_repeat 2 27 0 4 1626 246 291 117 31 chr3 136521536 136521699 -23078084 - RLTR25B LTR ERVK -410 618 442 4 1626 733 192 8 0 chr3 136521598 136521728 -23078055 - B1_Mur2 SINE Alu -7 142 12 4 1626 360 64 0 0 chr3 136523465 136523512 -23076271 + (TTTA)n Simple_repeat Simple_repeat 1 47 0 4 1626 21 0 0 0 chr3 136526349 136526370 -23073413 + AT_rich Low_complexity Low_complexity 1 21 0 4 1626 691 234 38 5 chr3 136527230 136527440 -23072343 - L1MA6 LINE L1 -31 6269 6053 4 1626 24 0 0 0 chr3 136528709 136528733 -23071050 + AT_rich Low_complexity Low_complexity 1 24 0 4 1626 449 303 69 137 chr3 136528836 136529142 -23070641 - B4A SINE B4 0 292 8 4 1626 219 348 41 52 chr3 136529493 136529687 -23070096 - MIR SINE MIR -10 252 61 4 1626 188 67 0 32 chr3 136530259 136530290 -23069493 + (TTTTTA)n Simple_repeat Simple_repeat 2 31 0 4 1626 214 73 73 0 chr3 136531307 136531348 -23068435 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 5 1626 278 297 59 0 chr3 136531403 136531504 -23068279 + MIR SINE MIR 34 140 -68 5 1626 252 0 0 0 chr3 136531896 136531924 -23067859 + (T)n Simple_repeat Simple_repeat 1 28 0 5 1626 567 98 0 0 chr3 136532567 136532659 -23067124 + (TC)n Simple_repeat Simple_repeat 2 93 0 5 1626 225 0 0 0 chr3 136532879 136532904 -23066879 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 5 1626 219 294 15 0 chr3 136532934 136533002 -23066781 - ID4 SINE ID -10 73 5 5 1626 777 174 291 0 chr3 136533519 136533691 -23066092 + URR1B DNA MER1_type 3 224 -1 5 1626 216 0 0 0 chr3 136534175 136534199 -23065584 + (GA)n Simple_repeat Simple_repeat 1 24 0 5 1626 309 317 9 9 chr3 136536066 136536171 -23063612 + CT-rich Low_complexity Low_complexity 4 108 0 5 1626 243 0 0 0 chr3 136537903 136537930 -23061853 + (CA)n Simple_repeat Simple_repeat 1 27 0 5 1626 404 333 39 0 chr3 136538672 136538801 -23060982 + RSINE1 SINE B4 3 136 -29 6 1626 180 0 0 0 chr3 136538814 136538834 -23060949 + (CA)n Simple_repeat Simple_repeat 1 20 0 6 1626 332 324 0 9 chr3 136539471 136539580 -23060203 - Lx8 LINE L1 -184 7289 7182 6 1626 329 250 64 29 chr3 136539630 136539770 -23060013 + Lx8 LINE L1 6989 7133 -340 6 1626 21 0 0 0 chr3 136542125 136542146 -23057637 + AT_rich Low_complexity Low_complexity 1 21 0 6 1626 615 27 0 0 chr3 136542469 136542542 -23057241 + (GA)n Simple_repeat Simple_repeat 2 74 0 6 1626 1363 85 16 0 chr3 136542545 136542734 -23057049 - B2_Mm2 SINE B2 -2 193 2 6 1626 204 40 0 0 chr3 136542996 136543021 -23056762 + (TTTC)n Simple_repeat Simple_repeat 3 27 0 6 1626 342 0 0 0 chr3 136543042 136543080 -23056703 + (TTG)n Simple_repeat Simple_repeat 2 39 0 6 1626 473 287 25 45 chr3 136543105 136543262 -23056521 + B3A SINE B2 37 190 -8 6 1626 726 185 209 22 chr3 136543279 136543461 -23056322 - B3 SINE B2 0 216 1 7 1626 1553 171 119 29 chr3 136545985 136546328 -23053455 - ORR1D1 LTR MaLR 0 374 1 7 1626 414 0 0 0 chr3 136546833 136546879 -23052904 + (TG)n Simple_repeat Simple_repeat 2 47 0 7 1626 565 298 52 13 chr3 136546882 136547035 -23052748 + B3A SINE B2 2 160 -38 7 1626 276 30 0 0 chr3 136547040 136547073 -23052710 + (CA)n Simple_repeat Simple_repeat 2 34 0 7 1626 231 330 42 11 chr3 136547424 136547519 -23052264 - MER102c DNA MER1_type -13 318 221 7 1626 319 323 124 12 chr3 136547891 136548060 -23051723 + L1M5 LINE L1 5584 5771 -469 7 1626 340 237 13 26 chr3 136548444 136548522 -23051261 + ID4 SINE ID 4 80 -3 7 1626 613 261 171 36 chr3 136549919 136550253 -23049530 - MTE2b LTR MaLR 0 379 1 7 1626 22 0 0 0 chr3 136550621 136550643 -23049140 + AT_rich Low_complexity Low_complexity 1 22 0 7 1626 271 234 160 60 chr3 136550660 136550760 -23049023 - RSINE1 SINE B4 0 165 56 8 1626 215 79 26 0 chr3 136552164 136552202 -23047581 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 8 1626 3570 66 41 6 chr3 136553579 136554064 -23045719 - Lx3_Mus LINE L1 -8 7001 6500 8 1626 216 222 55 18 chr3 136556300 136556355 -23043428 + B1_Mus1 SINE Alu 5 61 -87 8 1626 404 290 57 0 chr3 136556308 136556432 -23043351 + ID_B1 SINE B4 92 222 -2 8 1626 406 331 6 75 chr3 136558104 136558277 -23041506 - RSINE1 SINE B4 0 165 5 8 1626 1126 185 14 24 chr3 136558560 136558770 -23041013 - B3 SINE B2 -6 210 3 8 1626 29 0 0 0 chr3 136558924 136558953 -23040830 + AT_rich Low_complexity Low_complexity 1 29 0 8 1626 1102 123 157 10 chr3 136561967 136562164 -23037619 + URR1A DNA MER1_type 1 226 0 8 1626 405 0 0 0 chr3 136563051 136563096 -23036687 + (CA)n Simple_repeat Simple_repeat 1 45 0 8 1626 529 301 109 5 chr3 136563213 136563433 -23036350 - MER2 DNA MER2_type -33 312 70 9 1626 289 117 33 0 chr3 136564632 136564692 -23035091 + (TA)n Simple_repeat Simple_repeat 1 62 0 9 1626 234 0 0 0 chr3 136564692 136564718 -23035065 + (TG)n Simple_repeat Simple_repeat 1 26 0 9 1626 21 36 0 0 chr3 136565427 136565455 -23034328 + AT_rich Low_complexity Low_complexity 1 28 0 9 1626 204 217 0 0 chr3 136565499 136565545 -23034238 + GA-rich Low_complexity Low_complexity 1 46 0 9 1626 198 0 0 0 chr3 136568623 136568645 -23031138 + (A)n Simple_repeat Simple_repeat 1 22 0 9 1626 269 109 22 0 chr3 136569509 136569555 -23030228 + (TA)n Simple_repeat Simple_repeat 2 48 0 9 1626 762 285 29 8 chr3 136571626 136571870 -23027913 + B4A SINE B4 41 289 -3 9 1626 277 184 67 0 chr3 136573486 136573560 -23026223 + PB1D10 SINE Alu 25 105 -15 9 1626 237 132 0 0 chr3 136573774 136573812 -23025971 + (TTTTG)n Simple_repeat Simple_repeat 2 39 0 9 1626 26 0 0 0 chr3 136576308 136576334 -23023449 + AT_rich Low_complexity Low_complexity 1 26 0 1 1627 242 270 145 53 chr3 136577888 136578095 -23021688 + Charlie2b DNA MER1_type 2418 2643 -139 1 1627 605 257 67 6 chr3 136579021 136579201 -23020582 - B3A SINE B2 -7 191 1 1 1627 273 119 0 0 chr3 136579906 136579948 -23019835 + (CA)n Simple_repeat Simple_repeat 1 42 0 1 1627 202 167 0 94 chr3 136580845 136580898 -23018885 + A-rich Low_complexity Low_complexity 1 48 0 1 1627 198 0 0 0 chr3 136581158 136581180 -23018603 + (A)n Simple_repeat Simple_repeat 1 22 0 1 1627 328 283 57 0 chr3 136581472 136581578 -23018205 + B1F SINE Alu 25 136 -13 1 1627 465 19 0 0 chr3 136582412 136582466 -23017317 + (GGA)n Simple_repeat Simple_repeat 3 56 0 1 1627 216 0 0 0 chr3 136583324 136583348 -23016435 + (TG)n Simple_repeat Simple_repeat 2 25 0 1 1627 228 264 66 44 chr3 136583484 136583575 -23016208 - MTEb LTR MaLR -162 217 125 1 1627 240 329 12 0 chr3 136583713 136583795 -23015988 + ID4_ SINE ID 1 83 0 1 1627 1014 200 35 0 chr3 136584024 136584224 -23015559 - B3 SINE B2 -6 210 4 1 1627 207 138 33 33 chr3 136585677 136585737 -23014046 + CT-rich Low_complexity Low_complexity 6 65 0 1 1627 556 259 81 7 chr3 136585742 136585890 -23013893 - B4A SINE B4 -20 272 114 1 1627 192 348 22 38 chr3 136586440 136586579 -23013204 - L2b LINE L2 -287 3088 2956 1 1627 491 193 252 0 chr3 136588105 136588224 -23011559 + B1_Mur3 SINE Alu 1 149 0 1 1627 26 30 0 0 chr3 136589587 136589620 -23010163 + AT_rich Low_complexity Low_complexity 1 33 0 1 1627 1207 104 32 27 chr3 136589707 136589895 -23009888 + B2_Mm2 SINE B2 2 190 -5 1 1627 21 0 0 0 chr3 136590317 136590338 -23009445 + AT_rich Low_complexity Low_complexity 1 21 0 1 1627 201 139 0 0 chr3 136592840 136592883 -23006900 + (A)n Simple_repeat Simple_repeat 1 43 0 1 1627 429 20 0 0 chr3 136593243 136593293 -23006490 + (CA)n Simple_repeat Simple_repeat 1 50 0 1 1627 2908 37 0 3 chr3 136593476 136593825 -23005958 - L1Md_F3 LINE L1 -14 6570 6223 1 1627 351 96 0 0 chr3 136594742 136594794 -23004989 + (TG)n Simple_repeat Simple_repeat 2 53 0 1 1627 188 35 35 0 chr3 136597085 136597114 -23002669 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 1 1627 405 102 0 0 chr3 136598743 136598802 -23000981 + (A)n Simple_repeat Simple_repeat 1 59 0 1 1627 25 0 0 0 chr3 136598841 136598866 -23000917 + AT_rich Low_complexity Low_complexity 1 25 0 1 1627 658 250 49 37 chr3 136603574 136603736 -22996047 + RSINE1 SINE B4 2 165 0 1 1627 420 320 77 21 chr3 136604958 136605191 -22994592 - MER110A LTR ERV1 -2 466 221 1 1627 1302 70 0 0 chr3 136605268 136605570 -22994213 + (TG)n Simple_repeat Simple_repeat 1 302 0 1 1627 357 254 44 37 chr3 136605585 136605720 -22994063 + L1M5 LINE L1 4518 4653 -1493 1 1627 234 0 0 0 chr3 136606103 136606129 -22993654 + (CAA)n Simple_repeat Simple_repeat 2 27 0 1 1627 780 213 66 17 chr3 136606464 136606645 -22993138 + ORR1E LTR MaLR 1 190 -169 1 1627 531 194 0 0 chr3 136606645 136606753 -22993030 + CT-rich Low_complexity Low_complexity 2 109 0 1 1627 514 269 94 12 chr3 136606755 136606955 -22992828 + ORR1E LTR MaLR 169 370 0 1 1627 259 270 103 17 chr3 136607099 136607216 -22992567 + L1MD LINE L1 5564 5690 -552 1 1627 339 351 82 19 chr3 136607373 136607640 -22992143 + MLT1C LTR MaLR 131 414 -53 1 1627 785 227 11 23 chr3 136607671 136607847 -22991936 - B3 SINE B2 -28 188 15 1 1627 1003 84 0 0 chr3 136608022 136608165 -22991618 - B1_Mus1 SINE Alu 0 148 6 1 1627 287 317 118 80 chr3 136608169 136608594 -22991189 - LTR40a LTR ERVL -17 502 62 1 1627 581 241 131 35 chr3 136608990 136609188 -22990595 + ID_B1 SINE B4 2 218 -6 1 1627 712 122 8 8 chr3 136609232 136609356 -22990427 + (GAAA)n Simple_repeat Simple_repeat 3 126 0 1 1627 3286 31 23 0 chr3 136610132 136610519 -22989264 + MTA_Mm LTR MaLR 1 396 0 1 1627 234 0 0 0 chr3 136611933 136611959 -22987824 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 1 1627 1961 111 26 84 chr3 136612256 136612602 -22987181 + ORR1A3 LTR MaLR 1 326 0 1 1627 1022 288 63 18 chr3 136612605 136612977 -22986806 + MTD LTR MaLR 1 399 -8 1 1627 1337 248 108 26 chr3 136613225 136613606 -22986177 - MTD LTR MaLR -5 414 3 1 1627 191 287 0 11 chr3 136615332 136615427 -22984356 + G-rich Low_complexity Low_complexity 5 98 0 1 1627 1688 236 56 8 chr3 136616406 136616798 -22982985 - MTD LTR MaLR -8 411 1 1 1627 583 312 194 17 chr3 136617311 136617904 -22981879 + L1MEc LINE L1 56 753 -5647 1 1627 4867 124 56 12 chr3 136617934 136618753 -22981030 + RMER17B LTR ERVK 1 859 -99 1 1627 8501 21 1 0 chr3 136618753 136619710 -22980073 + RLTR13A2 LTR ERVK 1 958 0 1 1627 4867 231 24 40 chr3 136619710 136619762 -22980021 + RMER17B LTR ERVK 860 957 -1 1 1627 404 303 0 27 chr3 136619762 136619874 -22979909 + PB1 SINE Alu 17 125 -2 1 1627 361 255 36 21 chr3 136619880 136620072 -22979711 + L1MEc LINE L1 752 946 -5454 1 1627 381 345 61 28 chr3 136622392 136622604 -22977179 + MER21B LTR ERV1 30 248 -615 1 1627 21 0 0 0 chr3 136622876 136622897 -22976886 + AT_rich Low_complexity Low_complexity 1 21 0 1 1627 1482 194 8 99 chr3 136623161 136623516 -22976267 - ORR1A4 LTR MaLR -4 325 3 1 1627 4941 171 89 93 chr3 136623517 136624953 -22974830 - ORR1A4-int LTR MaLR -191 1772 645 1 1627 323 140 35 0 chr3 136624949 136625006 -22974777 + 4.5SRNA scRNA scRNA 4 62 -32 1 1627 1086 174 81 18 chr3 136624994 136625217 -22974566 - ORR1A4 LTR MaLR -119 275 39 1 1627 289 212 30 0 chr3 136626028 136626094 -22973689 - L1MC5 LINE L1 -1178 6783 6716 1 1627 831 93 7 21 chr3 136626723 136626865 -22972918 + (TTC)n Simple_repeat Simple_repeat 1 140 0 1 1627 567 188 0 0 chr3 136626866 136626983 -22972800 + CT-rich Low_complexity Low_complexity 3 119 0 1 1627 332 275 101 58 chr3 136626993 136627132 -22972651 - ID_B1 SINE B4 0 224 80 1 1627 882 203 124 5 chr3 136627390 136627583 -22972200 - B3 SINE B2 0 216 1 1 1627 506 29 15 0 chr3 136627908 136627976 -22971807 + (TAGA)n Simple_repeat Simple_repeat 4 72 0 1 1627 301 345 6 103 chr3 136629987 136630152 -22969631 + MIRm SINE MIR 34 182 -94 1 1627 247 308 0 44 chr3 136631495 136631563 -22968220 - MER5B DNA MER1_type -31 147 83 1 1627 798 356 52 16 chr3 136631597 136632037 -22967746 - MT2A LTR ERVL -77 456 1 1 1627 450 0 0 0 chr3 136633823 136633873 -22965910 + (TAG)n Simple_repeat Simple_repeat 1 50 0 1 1627 411 309 168 14 chr3 136633882 136634174 -22965609 + Lx8 LINE L1 7132 7468 -5 1 1627 3052 125 68 1 chr3 136634344 136634957 -22964826 + Lx3C LINE L1 740 1403 -4483 1 1627 23384 128 28 17 chr3 136634961 136637883 -22961900 + Lx3C LINE L1 1665 4632 -1254 1 1627 258 32 0 0 chr3 136637883 136637914 -22961869 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1 1627 23384 131 29 15 chr3 136637914 136640234 -22959549 + Lx3C LINE L1 4633 6973 -3 1 1627 347 269 21 0 chr3 136642164 136642257 -22957526 - B1_Mur3 SINE Alu -54 95 1 1 1627 319 314 100 40 chr3 136642295 136642544 -22957239 - L1M5 LINE L1 -3699 2447 2184 1 1627 627 198 30 30 chr3 136642546 136642681 -22957102 + B1_Mur1 SINE Alu 14 148 -1 1 1627 183 162 0 0 chr3 136642684 136642721 -22957062 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 1627 420 20 0 0 chr3 136642796 136642845 -22956938 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 1627 23 86 0 0 chr3 136643127 136643185 -22956598 + AT_rich Low_complexity Low_complexity 1 58 0 1 1627 41 48 0 0 chr3 136643285 136643347 -22956436 + AT_rich Low_complexity Low_complexity 1 62 0 1 1627 437 311 85 0 chr3 136645493 136645705 -22954078 + Lx8 LINE L1 6710 6939 -534 1 1627 527 357 25 33 chr3 136645722 136646171 -22953612 + Lx8 LINE L1 7021 7465 -8 1 1627 588 200 0 0 chr3 136646388 136646518 -22953265 + (TA)n Simple_repeat Simple_repeat 2 131 0 1 1627 180 200 0 0 chr3 136646611 136646656 -22953127 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 1627 1518 269 78 20 chr3 136646657 136647197 -22952586 - Lx8 LINE L1 -147 7326 6756 1 1627 540 285 7 27 chr3 136647292 136647440 -22952343 + Lx8 LINE L1 6509 6653 -820 1 1627 22 35 0 0 chr3 136647448 136647477 -22952306 + AT_rich Low_complexity Low_complexity 1 29 0 1 1627 461 155 144 0 chr3 136647985 136648082 -22951701 - B3 SINE B2 -96 120 10 1 1627 191 355 158 16 chr3 136648566 136648749 -22951034 - L2 LINE L2 -1044 2375 2167 1 1627 1391 221 117 8 chr3 136649519 136649870 -22949913 + MTD LTR MaLR 18 406 -13 1 1627 474 335 77 30 chr3 136649877 136650046 -22949737 - MTEa LTR MaLR -202 177 1 1 1627 252 321 0 0 chr3 136650654 136650735 -22949048 + CT-rich Low_complexity Low_complexity 2 82 0 1 1627 1437 207 112 30 chr3 136651206 136651545 -22948238 + ORR1D1 LTR MaLR 7 373 -1 1 1627 287 145 0 52 chr3 136651580 136651638 -22948145 - B3 SINE B2 -3 213 159 1 1627 261 75 0 0 chr3 136651638 136651678 -22948105 + (TC)n Simple_repeat Simple_repeat 2 41 0 1 1627 631 195 17 0 chr3 136651797 136651915 -22947868 - B1_Mus2 SINE Alu 0 147 28 1 1627 347 319 45 49 chr3 136651915 136652021 -22947762 - ID_B1 SINE B4 -1 223 1 1 1627 528 296 76 45 chr3 136652755 136653109 -22946674 - MLT1A0 LTR MaLR 0 365 1 1 1627 825 164 0 0 chr3 136653638 136653772 -22946011 + B1_Mur1 SINE Alu 8 141 -8 1 1627 29 28 0 0 chr3 136654159 136654195 -22945588 + AT_rich Low_complexity Low_complexity 1 36 0 1 1627 231 267 217 0 chr3 136654246 136654306 -22945477 + ID4 SINE ID 2 74 -9 1 1627 341 211 71 18 chr3 136654816 136654985 -22944798 + (TAGA)n Simple_repeat Simple_repeat 2 179 0 1 1627 248 200 164 57 chr3 136655332 136655454 -22944329 - MER53 DNA hAT -14 179 45 1 1627 185 345 53 43 chr3 136656587 136656681 -22943102 - MIR SINE MIR -140 122 28 1 1627 417 20 0 0 chr3 136659711 136659761 -22940022 + (TG)n Simple_repeat Simple_repeat 1 50 0 1 1627 2870 271 52 43 chr3 136661412 136661880 -22937903 - RCHARR1 DNA MER1_type 0 974 505 1 1627 3418 72 0 5 chr3 136661880 136662323 -22937460 + L1_Mus2 LINE L1 6126 6566 0 2 1627 2870 271 52 43 chr3 136662323 136662817 -22936966 - RCHARR1 DNA MER1_type -470 504 3 1 1627 266 282 159 8 chr3 136662904 136663036 -22936747 + L2a LINE L2 3272 3423 -3 2 1627 417 279 109 0 chr3 136663629 136663794 -22935989 + MER5A DNA MER1_type 1 183 -6 2 1627 468 0 0 0 chr3 136664729 136664781 -22935002 + (CA)n Simple_repeat Simple_repeat 1 52 0 2 1627 236 181 93 40 chr3 136665798 136665873 -22933910 - L1M5 LINE L1 -411 5751 5673 2 1627 325 344 40 0 chr3 136665934 136666059 -22933724 - L1M5 LINE L1 -596 5568 5439 2 1627 23 0 0 0 chr3 136666473 136666496 -22933287 + AT_rich Low_complexity Low_complexity 1 23 0 2 1627 221 162 0 14 chr3 136667111 136667180 -22932603 + (TCTA)n Simple_repeat Simple_repeat 1 68 0 2 1627 394 253 80 34 chr3 136667315 136667340 -22932443 + L1M4 LINE L1 5165 5189 -957 2 1627 324 48 0 0 chr3 136667340 136667382 -22932401 + (CA)n Simple_repeat Simple_repeat 2 43 0 2 1627 440 285 121 32 chr3 136667382 136667861 -22931922 + L1M4 LINE L1 5190 5711 -473 2 1627 27 0 0 0 chr3 136667958 136667985 -22931798 + AT_rich Low_complexity Low_complexity 1 27 0 2 1627 342 183 0 0 chr3 136668060 136668131 -22931652 + CT-rich Low_complexity Low_complexity 3 73 0 2 1627 786 342 45 47 chr3 136668446 136668826 -22930957 + MTEa LTR MaLR 1 379 0 2 1627 230 310 128 30 chr3 136669825 136669958 -22929825 - RMER20B LTR ERVK -481 146 1 2 1627 455 256 8 8 chr3 136670288 136670410 -22929373 - MERVK26-int LTR ERVK -313 6606 6485 2 1627 486 313 79 52 chr3 136672046 136672413 -22927370 - MERVK26-int LTR ERVK -6453 466 90 2 1627 328 268 192 28 chr3 136672894 136673041 -22926742 - RMER20B LTR ERVK -355 161 3 2 1627 279 351 54 73 chr3 136673270 136673531 -22926252 - MER2 DNA MER2_type 0 345 90 2 1627 333 341 179 3 chr3 136673866 136674157 -22925626 + L1MC4a LINE L1 6390 6731 -1151 2 1627 369 0 0 0 chr3 136675243 136675284 -22924499 + (TCTA)n Simple_repeat Simple_repeat 3 43 0 2 1627 934 116 123 0 chr3 136675292 136675447 -22924336 - B2_Mm2 SINE B2 -18 177 4 2 1627 1309 97 22 0 chr3 136675851 136676036 -22923747 + B2_Mm2 SINE B2 2 190 -5 2 1627 558 43 0 0 chr3 136676117 136676186 -22923597 + (TG)n Simple_repeat Simple_repeat 2 70 0 2 1627 456 258 8 62 chr3 136676212 136676340 -22923443 - B3A SINE B2 -76 122 2 2 1627 308 375 49 84 chr3 136676639 136676983 -22922800 + MLT1B LTR MaLR 18 349 -41 2 1627 432 0 0 0 chr3 136677583 136677631 -22922152 + (CAAAA)n Simple_repeat Simple_repeat 2 49 0 2 1627 450 0 0 0 chr3 136679093 136679143 -22920640 + (TG)n Simple_repeat Simple_repeat 1 50 0 2 1627 467 333 30 22 chr3 136679144 136679279 -22920504 - RSINE1 SINE B4 -9 156 21 2 1627 1043 266 115 34 chr3 136679278 136679664 -22920119 - MTD LTR MaLR -13 406 1 2 1627 212 0 36 0 chr3 136679696 136679724 -22920059 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 2 1627 307 250 13 0 chr3 136680377 136680453 -22919330 - PB1D10 SINE Alu -36 81 5 2 1627 28 0 0 0 chr3 136680464 136680492 -22919291 + AT_rich Low_complexity Low_complexity 1 28 0 2 1627 414 39 0 0 chr3 136680620 136680672 -22919111 + (TG)n Simple_repeat Simple_repeat 2 53 0 2 1627 701 79 10 0 chr3 136681480 136681581 -22918202 + (TTCC)n Simple_repeat Simple_repeat 1 102 0 2 1627 450 0 0 0 chr3 136681595 136681645 -22918138 + (CA)n Simple_repeat Simple_repeat 2 51 0 2 1627 230 273 22 11 chr3 136681996 136682085 -22917698 - Kanga1 DNA Tc2 -3 1742 1653 2 1627 351 0 0 0 chr3 136682258 136682297 -22917486 + (TG)n Simple_repeat Simple_repeat 1 39 0 2 1627 521 230 0 65 chr3 136682305 136682412 -22917371 - RSINE1 SINE B4 -62 103 4 2 1627 242 270 32 0 chr3 136683039 136683102 -22916681 - L3 LINE CR1 -30 4459 4395 2 1627 252 0 0 0 chr3 136683918 136683946 -22915837 + (CAAA)n Simple_repeat Simple_repeat 4 31 0 2 1627 332 331 0 0 chr3 136685811 136685959 -22913824 + CT-rich Low_complexity Low_complexity 1 148 0 2 1627 280 288 61 14 chr3 136686590 136686738 -22913045 + L1MEc LINE L1 136 290 -6110 2 1627 673 253 37 4 chr3 136686967 136687209 -22912574 + L1MEc LINE L1 679 928 -5472 2 1627 523 300 47 67 chr3 136687451 136687644 -22912139 - MTEa LTR MaLR -188 191 3 2 1627 21 0 0 0 chr3 136687669 136687690 -22912093 + AT_rich Low_complexity Low_complexity 1 21 0 2 1627 235 235 253 24 chr3 136688318 136688401 -22911382 + RSINE1 SINE B4 29 130 -35 2 1627 254 125 21 0 chr3 136688479 136688527 -22911256 + (CA)n Simple_repeat Simple_repeat 2 50 0 2 1627 2530 69 2 78 chr3 136688675 136689098 -22910685 - Lx2 LINE L1 -227 6770 6380 2 1627 296 331 55 19 chr3 136689167 136689438 -22910345 + L1MC LINE L1 4975 5255 -891 2 1627 333 360 65 9 chr3 136689557 136689787 -22909996 + L1M5 LINE L1 5318 5560 -604 2 1627 389 155 0 68 chr3 136689804 136689922 -22909861 + GA-rich Low_complexity Low_complexity 4 113 0 2 1627 209 200 0 35 chr3 136689942 136689999 -22909784 + GA-rich Low_complexity Low_complexity 3 57 0 2 1627 24 0 0 0 chr3 136690421 136690445 -22909338 + AT_rich Low_complexity Low_complexity 1 24 0 2 1627 369 327 54 42 chr3 136690726 136690892 -22908891 + B4 SINE B4 2 169 -123 2 1627 318 236 128 11 chr3 136691063 136691243 -22908540 - Charlie7 DNA MER1_type -10 2602 2402 2 1627 245 297 163 36 chr3 136691493 136691800 -22907983 - Charlie7 DNA MER1_type -552 2060 1715 2 1627 207 100 0 0 chr3 136692332 136692362 -22907421 + (T)n Simple_repeat Simple_repeat 1 30 0 2 1627 1778 217 60 10 chr3 136693163 136693564 -22906219 - MTC LTR MaLR 0 421 1 2 1627 426 20 0 0 chr3 136693661 136693712 -22906071 + (CA)n Simple_repeat Simple_repeat 1 51 0 2 1627 219 361 112 8 chr3 136694746 136694880 -22904903 + MIRb SINE MIR 93 240 -28 2 1627 23 68 0 0 chr3 136695156 136695200 -22904583 + AT_rich Low_complexity Low_complexity 1 44 0 2 1627 421 360 41 0 chr3 136695210 136695357 -22904426 - RSINE1 SINE B4 -1 164 12 2 1627 198 103 0 0 chr3 136696251 136696280 -22903503 + (TCC)n Simple_repeat Simple_repeat 1 29 0 2 1627 260 158 18 0 chr3 136697106 136697163 -22902620 + (TG)n Simple_repeat Simple_repeat 2 59 0 2 1627 728 282 87 70 chr3 136697185 136697471 -22902312 - B4A SINE B4 -1 291 1 2 1627 1052 200 9 35 chr3 136698110 136698338 -22901445 - URR1B DNA MER1_type -1 224 3 2 1627 387 60 0 0 chr3 136698517 136698567 -22901216 + (TG)n Simple_repeat Simple_repeat 2 51 0 2 1627 189 0 0 0 chr3 136698629 136698650 -22901133 + (T)n Simple_repeat Simple_repeat 1 21 0 2 1627 1177 297 21 26 chr3 136698811 136699602 -22900181 - RMER1C Other Other -489 853 37 2 1627 235 237 17 0 chr3 136700314 136700373 -22899410 - L1M2 LINE L1 -620 5671 5612 2 1627 411 113 0 0 chr3 136700707 136700778 -22899005 + (TG)n Simple_repeat Simple_repeat 2 72 0 2 1627 489 358 7 0 chr3 136700784 136700935 -22898848 - RSINE1 SINE B4 -6 159 8 2 1627 189 200 34 68 chr3 136701908 136701967 -22897816 + MIR SINE MIR 178 234 -28 2 1627 650 277 75 53 chr3 136703581 136703951 -22895832 - Lx9 LINE L1 -1752 5892 5478 2 1627 1273 195 32 52 chr3 136703955 136704263 -22895520 + RLTR46 LTR ERVK 14 315 -5 2 1627 441 277 16 48 chr3 136704278 136704464 -22895319 - L1_Mur3 LINE L1 -402 5478 5299 2 1627 395 309 58 7 chr3 136704548 136704685 -22895098 - B1_Mur2 SINE Alu -1 148 5 2 1627 1347 45 0 0 chr3 136704769 136704948 -22894835 + (TC)n Simple_repeat Simple_repeat 1 179 0 2 1627 2829 282 67 13 chr3 136704975 136705808 -22893975 - Lx8 LINE L1 -170 7303 6438 2 1627 372 94 0 0 chr3 136705808 136705861 -22893922 + (TA)n Simple_repeat Simple_repeat 2 54 0 2 1627 2829 282 67 13 chr3 136705861 136705971 -22893812 - Lx8 LINE L1 -1036 6437 6309 2 1627 318 333 79 10 chr3 136706851 136707257 -22892526 + L1M5 LINE L1 2927 3360 -2786 2 1627 182 91 0 29 chr3 136707351 136707385 -22892398 + (TAAA)n Simple_repeat Simple_repeat 1 33 0 2 1627 607 265 91 4 chr3 136707385 136707639 -22892144 - L1MC1 LINE L1 -25 6308 6033 2 1627 257 261 0 21 chr3 136707706 136707800 -22891983 + (TATATG)n Simple_repeat Simple_repeat 5 96 0 2 203 334 368 54 15 chr3 136708045 136708249 -22891534 + L1ME1 LINE L1 5767 5978 -201 2 1628 228 35 0 0 chr3 136708740 136708769 -22891014 + (CAA)n Simple_repeat Simple_repeat 3 31 0 2 1628 1184 262 74 25 chr3 136708811 136709175 -22890608 + MTEa-int LTR MaLR 1194 1575 -5 2 1628 1091 317 85 17 chr3 136709181 136709534 -22890249 + MTEa LTR MaLR 1 377 -2 2 1628 659 259 59 25 chr3 136709536 136709774 -22890009 - L1M2 LINE L1 -619 5672 5427 2 1628 1131 52 0 0 chr3 136709867 136710002 -22889781 - B1_Mus1 SINE Alu -13 135 1 2 1628 243 114 0 0 chr3 136710161 136710205 -22889578 + (TTAA)n Simple_repeat Simple_repeat 1 44 0 2 1628 6069 117 5 22 chr3 136710205 136711147 -22888636 - Lx3A LINE L1 -12 6969 6044 2 1628 2493 86 3 0 chr3 136711147 136711509 -22888274 + L1_Mur1 LINE L1 4836 5198 -688 2 1628 1098 290 69 34 chr3 136711514 136712020 -22887763 + Lx9 LINE L1 6972 7495 -149 2 1628 446 326 32 37 chr3 136712166 136712354 -22887429 + MTD LTR MaLR 1 187 -232 2 1628 2036 96 123 13 chr3 136712359 136712676 -22887107 + MT2B2 LTR ERVL 1 352 -232 2 1628 310 281 41 78 chr3 136712693 136712936 -22886847 - L1M2 LINE L1 -1886 4257 4024 2 1628 4818 132 55 37 chr3 136712940 136713826 -22885957 + RLTR13D6 LTR ERVK 1 902 0 2 1628 1023 309 22 8 chr3 136713836 136714326 -22885457 - L1M2 LINE L1 -2128 4015 3519 2 1628 2113 133 144 3 chr3 136714454 136714837 -22884946 - RLTR9B LTR ERVK 0 437 1 2 1628 519 60 0 0 chr3 136715613 136715680 -22884103 + (TG)n Simple_repeat Simple_repeat 2 68 0 2 1628 24 67 0 0 chr3 136717362 136717407 -22882376 + AT_rich Low_complexity Low_complexity 1 45 0 2 1628 3630 96 22 24 chr3 136717407 136717940 -22881843 - Lx3A LINE L1 -5 6976 6445 2 1628 1253 269 68 0 chr3 136718617 136718970 -22880813 + MTE2b LTR MaLR 2 378 -1 2 1628 195 42 0 0 chr3 136720002 136720026 -22879757 + (CA)n Simple_repeat Simple_repeat 2 25 0 2 1628 5826 165 76 54 chr3 136721959 136722374 -22877409 - RMER12 LTR ERVK 0 1322 913 2 1628 993 104 4 13 chr3 136722374 136722555 -22877228 + (CA)n Simple_repeat Simple_repeat 1 184 -55 2 1628 993 104 4 13 chr3 136722563 136722616 -22877167 + (CA)n Simple_repeat Simple_repeat 185 239 0 2 1628 5826 165 76 54 chr3 136722616 136723485 -22876298 - RMER12 LTR ERVK -430 892 3 2 1628 458 235 0 109 chr3 136723885 136723939 -22875844 + URR1A DNA MER1_type 1 49 -177 3 1628 4662 39 37 15 chr3 136723939 136724534 -22875249 - L1Md_F3 LINE L1 0 6584 5977 3 1628 458 235 0 109 chr3 136724534 136724589 -22875194 + URR1A DNA MER1_type 50 98 -128 3 1628 783 176 214 0 chr3 136724621 136724803 -22874980 + URR1A DNA MER1_type 1 221 -5 3 1628 1218 97 0 0 chr3 136725425 136725600 -22874183 + (GGAAA)n Simple_repeat Simple_repeat 4 178 0 3 1628 397 110 55 0 chr3 136725607 136725698 -22874085 + GA-rich Low_complexity Low_complexity 2 97 0 3 1628 191 0 103 0 chr3 136725720 136725749 -22874034 + (CAAGG)n Simple_repeat Simple_repeat 2 33 0 3 1628 4789 42 0 7 chr3 136725987 136726568 -22873215 + L1Md_T LINE L1 6005 6581 -1 3 1628 238 234 0 0 chr3 136726643 136726690 -22873093 + T-rich Low_complexity Low_complexity 1 47 0 3 1628 2818 295 80 28 chr3 136728036 136729233 -22870550 - Lx8 LINE L1 -9 7464 6205 3 1628 498 61 0 0 chr3 136729250 136729316 -22870467 + (TA)n Simple_repeat Simple_repeat 2 67 0 3 1628 616 341 97 38 chr3 136729645 136730120 -22869663 + MER90a LTR ERV1 112 614 0 3 1628 351 350 147 9 chr3 136730299 136730524 -22869259 - MIRb SINE MIR 0 262 7 3 1628 216 97 0 0 chr3 136730815 136730846 -22868937 + (A)n Simple_repeat Simple_repeat 1 31 0 3 1628 863 65 0 0 chr3 136730855 136730962 -22868821 + U6 snRNA snRNA 1 107 0 3 1628 310 316 151 43 chr3 136732055 136732194 -22867589 - ORR1E LTR MaLR -193 166 13 3 1628 268 331 0 8 chr3 136733279 136733377 -22866406 - BC1_Mm scRNA scRNA -55 97 5 3 1628 1078 208 211 3 chr3 136733774 136734059 -22865724 + ORR1D1 LTR MaLR 29 372 -2 3 1628 356 242 11 0 chr3 136734083 136734174 -22865609 - Lx9 LINE L1 -594 7050 6959 3 1628 351 0 0 0 chr3 136734299 136734338 -22865445 + (TG)n Simple_repeat Simple_repeat 2 40 0 3 1628 656 241 34 14 chr3 136734338 136734485 -22865298 - B3 SINE B2 -30 186 37 3 1628 468 0 0 0 chr3 136736138 136736190 -22863593 + (TG)n Simple_repeat Simple_repeat 2 53 0 3 1628 24 0 0 0 chr3 136736316 136736340 -22863443 + AT_rich Low_complexity Low_complexity 1 24 0 3 1628 450 0 0 0 chr3 136736483 136736533 -22863250 + (TG)n Simple_repeat Simple_repeat 2 51 0 3 1628 233 282 146 81 chr3 136736670 136736855 -22862928 - B3A SINE B2 0 198 2 3 1628 1846 268 108 32 chr3 136737710 136738462 -22861321 - Lx9 LINE L1 -8 7636 6828 3 1628 2175 266 53 15 chr3 136738504 136739158 -22860625 + Lx9 LINE L1 6165 6843 -801 3 1628 292 329 92 7 chr3 136739159 136739300 -22860483 - MLT1C LTR MaLR -280 187 35 3 1628 22 0 0 0 chr3 136739301 136739323 -22860460 + AT_rich Low_complexity Low_complexity 1 22 0 3 1628 943 173 90 9 chr3 136739323 136739556 -22860227 - Lx9 LINE L1 -8 7636 7385 3 1628 529 125 105 9 chr3 136739559 136739664 -22860119 + L1_Rod LINE L1 5080 5194 -653 3 1628 1199 45 7 0 chr3 136740093 136740247 -22859536 + (TCTA)n Simple_repeat Simple_repeat 4 158 0 3 1628 202 244 0 43 chr3 136740358 136740405 -22859378 + polypyrimidine Low_complexity Low_complexity 3 47 0 3 1628 522 83 0 0 chr3 136742706 136742778 -22857005 + (GGAA)n Simple_repeat Simple_repeat 3 74 0 3 1628 233 220 103 0 chr3 136742979 136743062 -22856721 - MIRb SINE MIR -12 256 166 3 1628 230 347 114 108 chr3 136743490 136743823 -22855960 + MamGypLTR1c LTR Gypsy 61 395 -408 3 1628 355 85 0 17 chr3 136744547 136744607 -22855176 - Lx2 LINE L1 -720 6277 6219 3 1628 5532 154 28 1 chr3 136744601 136745869 -22853914 - Lx2 LINE L1 -953 6044 4732 3 1628 7755 146 26 12 chr3 136746541 136747835 -22851948 - Lx4A LINE L1 -5 7053 5741 3 1628 212 93 0 44 chr3 136748208 136748253 -22851530 + (TTTTTG)n Simple_repeat Simple_repeat 6 48 0 3 1628 234 0 0 0 chr3 136748614 136748640 -22851143 + (TG)n Simple_repeat Simple_repeat 1 26 0 3 1628 859 237 90 12 chr3 136748685 136748941 -22850842 - B4 SINE B4 -15 277 2 3 1628 3114 153 21 23 chr3 136748976 136749538 -22850245 - RLTR31_Mm LTR ERVK 0 561 1 3 1628 333 387 24 42 chr3 136751233 136751446 -22848337 - MIR SINE MIR -4 258 50 3 1628 1011 232 13 0 chr3 136751901 136752125 -22847658 - Lx9 LINE L1 -221 7423 7197 3 1628 1825 206 58 18 chr3 136752204 136752584 -22847199 - MTD LTR MaLR -20 399 5 3 1628 28 71 0 0 chr3 136752716 136752772 -22847011 + AT_rich Low_complexity Low_complexity 1 56 0 3 1628 21 71 0 0 chr3 136752830 136752872 -22846911 + AT_rich Low_complexity Low_complexity 1 42 0 3 1628 249 310 42 0 chr3 136753497 136753568 -22846215 + ID4_ SINE ID 9 82 -1 3 1628 32 57 0 0 chr3 136754642 136754695 -22845088 + AT_rich Low_complexity Low_complexity 1 53 0 3 1628 888 242 112 3 chr3 136755334 136755617 -22844166 - Lx3C LINE L1 -11 6989 6662 3 1628 279 177 203 65 chr3 136755615 136755731 -22844052 + Lx3C LINE L1 6433 6555 -503 3 1628 312 188 0 15 chr3 136755726 136755791 -22843992 + Lx2B LINE L1 6599 6662 -338 3 1628 319 242 65 32 chr3 136756458 136756612 -22843171 + RMER17C LTR ERVK 112 270 -140 3 1628 747 232 129 5 chr3 136758302 136758488 -22841295 + B3 SINE B2 8 216 0 3 1628 629 265 14 7 chr3 136759135 136759273 -22840510 + B1_Mur1 SINE Alu 1 140 -9 3 1628 258 105 0 0 chr3 136759273 136759311 -22840472 + (CAAG)n Simple_repeat Simple_repeat 2 39 0 3 1628 546 279 0 136 chr3 136759383 136759582 -22840201 + RMER30 DNA MER1_type 8 179 -23 3 1628 7819 114 21 40 chr3 136762159 136763426 -22836357 + Lx3_Mus LINE L1 5744 6986 -23 3 1628 180 0 0 0 chr3 136763426 136763446 -22836337 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 3 1628 7819 114 21 40 chr3 136763446 136763468 -22836315 + Lx3_Mus LINE L1 6987 7008 -1 3 1628 985 294 103 19 chr3 136764595 136765128 -22834655 + Lx9 LINE L1 7061 7638 -6 3 1628 371 182 0 0 chr3 136765787 136765853 -22833930 + B3A SINE B2 1 66 -132 3 1628 189 0 0 0 chr3 136765950 136765971 -22833812 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 3 1628 216 0 0 0 chr3 136766009 136766033 -22833750 + (CA)n Simple_repeat Simple_repeat 2 25 0 3 1628 612 0 0 0 chr3 136766034 136766102 -22833681 + (GA)n Simple_repeat Simple_repeat 1 68 0 3 1628 538 351 73 29 chr3 136766159 136766405 -22833378 - B4A SINE B4 0 292 36 3 1628 262 379 62 28 chr3 136766722 136766901 -22832882 + MER20B DNA MER1_type 309 493 -290 3 1628 342 304 103 103 chr3 136767379 136767698 -22832085 + MLT2D LTR ERVL 73 408 -6 3 1628 244 94 19 19 chr3 136768026 136768080 -22831703 + (TTTTG)n Simple_repeat Simple_repeat 2 55 0 3 1628 691 187 72 0 chr3 136768084 136768223 -22831560 - B1_Mur4 SINE Alu 0 150 2 3 1628 555 16 0 0 chr3 136768622 136768686 -22831097 + (TGG)n Simple_repeat Simple_repeat 2 65 0 3 1628 381 43 0 0 chr3 136768687 136768734 -22831049 + (GGA)n Simple_repeat Simple_repeat 3 49 0 3 1628 1621 222 93 3 chr3 136769660 136770013 -22829770 - ORR1B1 LTR MaLR 0 394 10 3 1628 293 280 13 0 chr3 136772653 136772728 -22827055 - B3A SINE B2 -122 76 1 3 1628 1097 128 0 6 chr3 136774257 136774438 -22825345 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 3 1628 1239 47 0 0 chr3 136774438 136774586 -22825197 - B1_Mus1 SINE Alu 0 148 1 3 1628 1124 36 0 0 chr3 136776072 136776210 -22823573 - B1_Mm SINE Alu 0 147 10 3 1628 5328 85 35 9 chr3 136776412 136777174 -22822609 - RLTR13C2 LTR ERVK -26 782 1 3 1628 182 327 43 43 chr3 136779370 136779485 -22820298 + L3 LINE CR1 2001 2115 -2374 3 1628 474 281 15 15 chr3 136780949 136781086 -22818697 + MTEa LTR MaLR 39 175 -204 3 1628 2793 32 0 0 chr3 136781090 136781428 -22818355 - ORR1A1 LTR MaLR -8 338 1 3 1628 797 251 14 28 chr3 136781428 136781616 -22818167 + MTEa LTR MaLR 171 358 -21 3 1628 189 74 0 0 chr3 136781616 136781643 -22818140 + (CAA)n Simple_repeat Simple_repeat 2 28 0 3 1628 797 251 14 28 chr3 136781643 136781665 -22818118 + MTEa LTR MaLR 359 378 -1 3 1628 285 29 0 0 chr3 136782528 136782562 -22817221 + (GAAA)n Simple_repeat Simple_repeat 3 36 0 3 1628 573 97 0 116 chr3 136782570 136782768 -22817015 + GA-rich Low_complexity Low_complexity 2 176 0 3 1628 432 130 0 0 chr3 136783058 136783127 -22816656 + (TG)n Simple_repeat Simple_repeat 1 69 0 3 1628 1400 274 52 39 chr3 136784341 136784725 -22815058 + MTD LTR MaLR 18 406 -13 3 1628 183 100 0 0 chr3 136785442 136785472 -22814311 + (TA)n Simple_repeat Simple_repeat 1 30 0 3 1628 31 26 0 0 chr3 136785553 136785591 -22814192 + AT_rich Low_complexity Low_complexity 1 38 0 3 1628 45 0 0 0 chr3 136786000 136786045 -22813738 + AT_rich Low_complexity Low_complexity 1 45 0 3 1628 237 33 0 0 chr3 136786185 136786215 -22813568 + (CAAAAA)n Simple_repeat Simple_repeat 1 30 0 3 1628 612 289 99 17 chr3 136786225 136786577 -22813206 + L1M2 LINE L1 4575 4955 -1188 3 1628 763 259 40 11 chr3 136786590 136786766 -22813017 + RLTR18B LTR ERVK 12 192 -320 3 1628 2727 171 114 34 chr3 136786789 136787378 -22812405 + RMER6C LTR ERVK 1 636 -54 3 1628 950 283 44 11 chr3 136787790 136788154 -22811629 + L1M2 LINE L1 5417 5792 -508 3 1628 752 249 81 54 chr3 136788187 136788691 -22811092 + L1_Mur3 LINE L1 1888 2405 -3475 3 1628 2619 275 65 24 chr3 136788703 136789909 -22809874 + L1_Mur3 LINE L1 3135 4389 -1491 3 1628 378 0 0 0 chr3 136789909 136789951 -22809832 + (TA)n Simple_repeat Simple_repeat 2 43 0 3 1628 2619 275 65 24 chr3 136789951 136790112 -22809671 + L1_Mur3 LINE L1 4390 4557 -1323 3 1628 425 265 0 0 chr3 136790195 136790293 -22809490 + Lx8 LINE L1 7082 7179 -294 3 1628 22 0 0 0 chr3 136790429 136790451 -22809332 + AT_rich Low_complexity Low_complexity 1 22 0 3 1628 506 299 13 130 chr3 136790520 136790758 -22809025 + B4A SINE B4 83 292 0 3 1628 2930 6 0 0 chr3 136790908 136791250 -22808533 + L1Md_A LINE L1 5245 5586 -297 3 1628 9093 1 0 0 chr3 136791250 136792246 -22807537 + L1Md_A LINE L1 5587 6582 0 3 1628 553 194 0 0 chr3 136793154 136793252 -22806531 - B1_Mur2 SINE Alu -13 136 39 3 1628 320 328 31 85 chr3 136793252 136793377 -22806406 - ID_B1 SINE B4 -13 211 1 3 1628 30152 95 8 21 chr3 136793938 136799523 -22800260 - L1_Mus1 LINE L1 0 6567 1061 3 1628 3130 71 2 0 chr3 136799523 136799918 -22799865 - MTA_Mm LTR MaLR 0 396 1 3 1628 2379 162 38 12 chr3 136799918 136800235 -22799548 - L1_Mus1 LINE L1 -5597 1060 725 3 1628 402 237 53 8 chr3 136800243 136800375 -22799408 - L1_Mus1 LINE L1 -5813 803 666 3 1628 371 269 52 88 chr3 136800393 136800662 -22799121 - L1VL1 LINE L1 -5933 485 45 4 1628 2041 157 61 23 chr3 136801393 136801785 -22797998 - MTB_Mm LTR MaLR 0 407 1 4 1628 311 317 30 75 chr3 136803742 136803875 -22795908 - L1M LINE L1 -814 5426 5300 4 1628 253 222 206 0 chr3 136804883 136804946 -22794837 + ID4_ SINE ID 8 83 0 4 1628 573 42 0 0 chr3 136805012 136805084 -22794699 + (TG)n Simple_repeat Simple_repeat 2 73 0 4 1628 22 35 0 0 chr3 136805917 136805946 -22793837 + AT_rich Low_complexity Low_complexity 1 29 0 4 1628 262 405 0 9 chr3 136806130 136806242 -22793541 + B3A SINE B2 65 175 -23 4 1628 465 293 71 30 chr3 136806680 136806877 -22792906 + MER3 DNA MER1_type 4 208 -1 4 1628 5788 33 1 3 chr3 136807581 136808275 -22791508 + L1Md_F3 LINE L1 5878 6570 -14 4 1628 345 330 114 27 chr3 136810065 136810249 -22789534 - MER3 DNA MER1_type -9 200 1 4 1628 588 168 217 0 chr3 136811199 136811249 -22788534 + RMER1C Other Other 1146 1201 -141 4 1628 192 77 0 0 chr3 136811249 136811275 -22788508 + (TTA)n Simple_repeat Simple_repeat 2 27 0 4 1628 588 168 217 0 chr3 136811275 136811385 -22788398 + RMER1C Other Other 1202 1340 -2 4 1628 330 67 0 0 chr3 136812020 136812065 -22787718 + (TTA)n Simple_repeat Simple_repeat 1 45 0 4 1628 321 358 50 78 chr3 136812141 136812359 -22787424 - MER20 DNA MER1_type -6 213 2 4 1628 738 287 26 68 chr3 136812434 136812699 -22787084 + B4A SINE B4 1 254 -38 4 1628 336 102 0 0 chr3 136812708 136812757 -22787026 + (CA)n Simple_repeat Simple_repeat 2 50 0 4 1628 349 267 0 65 chr3 136812761 136812853 -22786930 - PB1D9 SINE Alu -26 94 9 4 1628 198 103 0 0 chr3 136814020 136814049 -22785734 + (T)n Simple_repeat Simple_repeat 1 29 0 4 1628 256 236 14 0 chr3 136814368 136814440 -22785343 + RMER1B Other Other 962 1034 -32 4 1628 315 0 0 0 chr3 136814440 136814475 -22785308 + (CTA)n Simple_repeat Simple_repeat 3 37 0 4 1628 260 280 3 78 chr3 136815162 136815268 -22784515 + ID_B1 SINE B4 29 222 -2 4 1628 257 316 51 31 chr3 136816590 136816607 -22783176 - PB1D7 SINE Alu 0 120 22 4 1628 299 262 100 0 chr3 136816607 136816687 -22783096 - ID_B1 SINE B4 -34 190 103 4 1628 235 256 90 34 chr3 136817131 136817220 -22782563 - MLT1A0 LTR MaLR -17 348 255 4 1628 24 32 0 0 chr3 136820352 136820383 -22779400 + AT_rich Low_complexity Low_complexity 1 31 0 4 1628 336 336 91 75 chr3 136820784 136821170 -22778613 - MLT2B2 LTR ERVL -2 513 122 4 1628 301 286 0 0 chr3 136821602 136821672 -22778111 + ID4 SINE ID 12 81 -2 4 1628 375 355 102 34 chr3 136821699 136822023 -22777760 - L1MEf LINE L1 -3475 2671 2326 4 1628 265 188 0 0 chr3 136822276 136822324 -22777459 + MTE2b LTR MaLR 1 48 -331 4 1628 589 221 157 6 chr3 136822338 136822497 -22777286 + MTE2b LTR MaLR 197 379 0 4 1628 478 330 112 75 chr3 136822626 136823261 -22776522 - L1MEf LINE L1 -4509 1733 1038 4 1628 366 379 155 6 chr3 136823712 136824028 -22775755 - L1MEf LINE L1 -5612 524 162 4 1628 3724 131 79 19 chr3 136824662 136825298 -22774485 - Lx LINE L1 -17 6637 5964 4 1628 227 274 87 19 chr3 136825587 136825691 -22774092 - Cheshire DNA MER1_type -2133 287 177 4 1628 2739 95 0 0 chr3 136825973 136826372 -22773411 - Lx3B LINE L1 -889 6084 5686 4 1628 228 255 71 0 chr3 136826386 136826484 -22773299 + Lx9 LINE L1 7488 7592 -52 4 1628 414 108 0 0 chr3 136827951 136828016 -22771767 + (TA)n Simple_repeat Simple_repeat 1 65 0 4 1628 225 65 0 0 chr3 136830046 136830077 -22769706 + (CAT)n Simple_repeat Simple_repeat 2 32 0 4 1628 275 374 50 5 chr3 136830525 136830639 -22769144 + Tigger6a DNA MER2_type 66 183 -900 4 1628 5389 36 0 0 chr3 136830639 136831275 -22768508 + L1Md_A LINE L1 5946 6581 -1 4 1628 275 374 50 5 chr3 136831275 136831359 -22768424 + Tigger6a DNA MER2_type 184 272 -811 4 1628 21 0 0 0 chr3 136831359 136831380 -22768403 + AT_rich Low_complexity Low_complexity 1 21 0 4 1628 8843 124 27 3 chr3 136831380 136832923 -22766860 - Lx4A LINE L1 -3 7055 5474 4 1628 758 309 141 14 chr3 136832929 136833587 -22766196 + Tigger6a DNA MER2_type 262 1042 -41 4 1628 790 327 130 34 chr3 136833654 136834214 -22765569 + Lx9 LINE L1 6437 7050 -594 4 1628 1230 291 57 11 chr3 136835224 136835595 -22764188 - MTD LTR MaLR -14 405 18 4 1628 1338 53 0 0 chr3 136835726 136835897 -22763886 + (GGGAGA)n Simple_repeat Simple_repeat 5 175 0 4 1628 446 246 169 0 chr3 136835983 136836101 -22763682 - B1_Mm SINE Alu -5 142 5 4 1628 426 291 25 62 chr3 136837949 136838110 -22761673 - Lx8 LINE L1 -1070 6403 6249 4 1628 2877 276 117 116 chr3 136838120 136838349 -22761434 - L1_Mur3 LINE L1 -1022 4858 4631 4 1628 1145 92 6 0 chr3 136838349 136838522 -22761261 + (TTC)n Simple_repeat Simple_repeat 2 175 0 4 203 2877 276 117 116 chr3 136838522 136841562 -22758221 - L1_Mur3 LINE L1 -1250 4630 1583 4 1629 34 93 0 0 chr3 136841613 136841710 -22758073 + AT_rich Low_complexity Low_complexity 1 97 0 4 1629 258 106 0 0 chr3 136841831 136841878 -22757905 + (TC)n Simple_repeat Simple_repeat 1 47 0 4 1629 207 0 0 0 chr3 136841878 136841901 -22757882 + (TG)n Simple_repeat Simple_repeat 2 24 0 4 1629 2352 174 38 0 chr3 136841947 136842344 -22757439 - MTC LTR MaLR -8 413 2 4 1629 537 321 74 52 chr3 136842361 136842630 -22757153 - B4A SINE B4 -13 279 5 4 1629 231 362 8 52 chr3 136842845 136842979 -22756804 - B3A SINE B2 -16 182 55 4 1629 296 309 10 31 chr3 136843671 136843768 -22756015 + MLT1A LTR MaLR 277 371 -3 4 1629 216 0 0 0 chr3 136845346 136845370 -22754413 + (TG)n Simple_repeat Simple_repeat 2 25 0 4 1629 610 338 58 18 chr3 136845893 136846170 -22753613 + MLT1C LTR MaLR 171 458 -9 4 1629 4723 229 29 9 chr3 136846505 136847992 -22751791 + Lx6 LINE L1 5223 6739 -721 4 1629 922 292 10 3 chr3 136848010 136848316 -22751467 + Lx6 LINE L1 6225 6751 -709 4 1629 495 0 0 0 chr3 136848327 136848382 -22751401 + (GGAA)n Simple_repeat Simple_repeat 3 57 0 4 1629 514 194 0 28 chr3 136848387 136848493 -22751290 + Lx6 LINE L1 6827 6929 -531 4 1629 1158 64 0 0 chr3 136848636 136848776 -22751007 - B1_Mus1 SINE Alu -8 140 1 4 1629 5335 195 53 45 chr3 136848837 136850006 -22749777 - Lx5 LINE L1 -81 6969 5792 4 1629 594 75 0 0 chr3 136850006 136850086 -22749697 + (GA)n Simple_repeat Simple_repeat 2 81 0 4 1629 259 327 111 78 chr3 136850111 136850327 -22749456 - B4A SINE B4 -60 232 2 4 1629 1778 186 15 6 chr3 136850954 136851278 -22748505 - ORR1A1 LTR MaLR 0 346 20 4 1629 395 319 0 0 chr3 136851289 136851405 -22748378 - PB1D7 SINE Alu -1 119 4 4 1629 958 235 9 0 chr3 136851452 136851665 -22748118 + B3 SINE B2 2 216 0 4 1629 279 0 0 0 chr3 136852440 136852471 -22747312 + (TG)n Simple_repeat Simple_repeat 2 32 0 4 1629 226 258 0 70 chr3 136853098 136853169 -22746614 - MER33 DNA MER1_type -15 309 244 4 1629 189 0 0 0 chr3 136853169 136853190 -22746593 + (GA)n Simple_repeat Simple_repeat 2 22 0 4 1629 342 0 0 0 chr3 136854321 136854359 -22745424 + (TGG)n Simple_repeat Simple_repeat 1 38 0 4 1629 276 30 0 0 chr3 136854446 136854479 -22745304 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 4 1629 207 0 0 0 chr3 136854716 136854739 -22745044 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 4 1629 2104 77 3 0 chr3 136855983 136856270 -22743513 - L1_Mus4 LINE L1 -13 6623 6336 4 1629 758 229 35 60 chr3 136856281 136856579 -22743204 + RLTR15 LTR ERVK 36 331 -28 4 1629 1265 96 11 0 chr3 136856579 136856757 -22743026 + B2_Mm1t SINE B2 1 180 -13 4 1629 758 229 35 60 chr3 136856757 136856774 -22743009 + RLTR15 LTR ERVK 332 343 -16 4 1629 226 149 419 0 chr3 136856777 136856870 -22742913 + B2_Mm2 SINE B2 64 195 0 4 1629 3042 137 101 9 chr3 136857090 136857627 -22742156 + RLTR33 LTR ERVK 1 586 -92 4 1629 1111 306 39 39 chr3 136858123 136858585 -22741198 - Lx7 LINE L1 -276 7420 6959 4 1629 1613 261 61 38 chr3 136858643 136859046 -22740737 - Lx7 LINE L1 -1098 6598 6192 4 1629 456 19 0 0 chr3 136859046 136859099 -22740684 + (TG)n Simple_repeat Simple_repeat 2 54 0 4 1629 1613 261 61 38 chr3 136859099 136859221 -22740562 - Lx7 LINE L1 -1505 6191 6062 4 1629 1947 113 23 73 chr3 136860651 136860995 -22738788 - ORR1A2 LTR MaLR 0 327 1 4 1629 24 53 0 0 chr3 136861414 136861452 -22738331 + AT_rich Low_complexity Low_complexity 1 38 0 4 1629 486 0 0 0 chr3 136861693 136861747 -22738036 + (CA)n Simple_repeat Simple_repeat 2 55 0 4 1629 264 235 26 0 chr3 136862459 136862574 -22737209 + (TG)n Simple_repeat Simple_repeat 2 119 0 4 1629 1074 245 11 43 chr3 136862585 136862866 -22736917 - Lx8 LINE L1 -521 6952 6681 4 1629 1203 273 60 37 chr3 136862869 136863303 -22736480 + Lx8 LINE L1 7026 7469 -4 4 1629 1216 212 161 8 chr3 136864178 136864531 -22735252 + MTD LTR MaLR 13 419 0 4 1629 487 273 40 48 chr3 136864929 136865156 -22734627 - L1M3c LINE L1 -4910 1231 1007 4 1629 1280 98 22 0 chr3 136865599 136865783 -22734000 + B2_Mm2 SINE B2 1 188 -7 4 1629 3306 325 57 13 chr3 136866455 136867563 -22732220 - MTEa-int LTR MaLR -351 1229 73 4 1629 593 342 30 10 chr3 136867563 136867761 -22732022 + MTE-int LTR MaLR 912 1113 -467 4 1629 225 286 84 14 chr3 136867747 136867818 -22731965 - MTEa-int LTR MaLR -1504 76 1 4 1629 480 317 86 75 chr3 136867818 136868190 -22731593 - MTEa LTR MaLR 0 379 4 4 1629 241 183 22 79 chr3 136868460 136868549 -22731234 + L1MEc LINE L1 799 882 -5518 4 1629 39 102 0 0 chr3 136868650 136868787 -22730996 + AT_rich Low_complexity Low_complexity 1 137 0 4 1629 554 295 126 6 chr3 136868869 136869026 -22730757 + B3A SINE B2 2 180 -18 4 1629 351 0 0 0 chr3 136869026 136869065 -22730718 + (CA)n Simple_repeat Simple_repeat 2 40 0 4 1629 554 295 126 6 chr3 136869065 136869081 -22730702 + B3A SINE B2 181 195 -3 4 1629 366 348 20 56 chr3 136869894 136870089 -22729694 + RMER30 DNA MER1_type 8 195 -7 4 1629 645 38 0 0 chr3 136870572 136870652 -22729131 + (TC)n Simple_repeat Simple_repeat 1 80 0 4 1629 354 169 0 0 chr3 136870673 136870738 -22729045 + CT-rich Low_complexity Low_complexity 3 67 0 4 1629 4563 143 61 8 chr3 136870748 136870952 -22728831 - Lx3C LINE L1 -2 6974 6770 4 1629 1056 122 0 0 chr3 136870952 136871116 -22728667 + (TCTA)n Simple_repeat Simple_repeat 4 167 0 4 1629 4563 143 61 8 chr3 136871116 136871667 -22728116 - Lx3C LINE L1 -207 6769 6181 4 1629 597 348 77 59 chr3 136871898 136872170 -22727613 + B4 SINE B4 14 290 -2 4 1629 233 370 108 24 chr3 136872502 136872715 -22727068 - MLT1N2 LTR MaLR -2 560 330 4 1629 554 321 222 24 chr3 136872895 136873192 -22726591 + MLT1A0 LTR MaLR 10 365 0 4 1629 24 0 0 0 chr3 136873619 136873643 -22726140 + AT_rich Low_complexity Low_complexity 1 24 0 5 1629 269 341 125 14 chr3 136873710 136873852 -22725931 + L2b LINE L2 3213 3349 -38 5 1629 762 41 0 0 chr3 136873886 136873984 -22725799 + (TG)n Simple_repeat Simple_repeat 2 99 0 5 1629 621 349 50 68 chr3 136875407 136875788 -22723995 + MLT1A LTR MaLR 1 374 0 5 1629 448 285 14 35 chr3 136877929 136878071 -22721712 - B1_Mur4 SINE Alu -5 145 7 5 1629 966 193 28 6 chr3 136878187 136878369 -22721414 - URR1B DNA MER1_type -15 210 25 5 1629 376 78 31 15 chr3 136878719 136878784 -22720999 + (GAAAA)n Simple_repeat Simple_repeat 5 70 0 5 1629 583 240 8 60 chr3 136879174 136879307 -22720476 + B4 SINE B4 163 288 -4 5 1629 273 57 0 0 chr3 136879310 136879345 -22720438 + (CA)n Simple_repeat Simple_repeat 2 36 0 5 1629 245 340 27 45 chr3 136879620 136879731 -22720052 - LTR84b LTR ERVL -31 730 622 5 1629 308 333 0 0 chr3 136881040 136881133 -22718650 + BC1_Mm scRNA scRNA 3 95 -57 5 1629 1034 177 52 14 chr3 136881695 136881907 -22717876 + Lx9 LINE L1 6987 7206 -438 5 1629 353 310 24 57 chr3 136882098 136882221 -22717562 + B1F1 SINE Alu 2 120 0 5 1629 28 48 0 0 chr3 136882471 136882513 -22717270 + AT_rich Low_complexity Low_complexity 1 42 0 5 1629 371 239 71 91 chr3 136882817 136882878 -22716905 - MT2A LTR ERVL 0 533 473 5 1629 513 0 0 0 chr3 136882878 136882935 -22716848 + (CA)n Simple_repeat Simple_repeat 2 58 0 5 1629 371 239 71 91 chr3 136882935 136883071 -22716712 - MT2A LTR ERVL -61 472 340 5 1629 673 227 48 53 chr3 136883075 136883316 -22716467 + Lx4B LINE L1 6712 7038 -20 5 1629 243 0 0 0 chr3 136883316 136883343 -22716440 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 5 1629 664 229 15 138 chr3 136883346 136883549 -22716234 - MT2A LTR ERVL -355 178 1 5 1629 376 316 181 47 chr3 136883771 136884070 -22715713 + L1ME3A LINE L1 5592 5930 -243 5 1629 784 257 11 11 chr3 136885263 136885452 -22714331 + B3A SINE B2 3 191 -7 5 1629 1017 25 0 0 chr3 136887511 136887631 -22712152 + (TA)n Simple_repeat Simple_repeat 2 121 0 5 1629 528 317 28 28 chr3 136887702 136887845 -22711938 - B3A SINE B2 -38 160 18 5 1629 2908 140 107 8 chr3 136888129 136888748 -22711035 + L1_Mur2 LINE L1 1535 2223 -3663 5 1629 507 262 152 5 chr3 136888840 136889024 -22710759 - B3 SINE B2 -5 211 1 5 1629 731 112 8 0 chr3 136891031 136891156 -22708627 + (TCTA)n Simple_repeat Simple_repeat 4 129 0 5 1629 25 0 0 0 chr3 136891882 136891907 -22707876 + AT_rich Low_complexity Low_complexity 1 25 0 5 1629 24188 2 3 0 chr3 136891907 136895453 -22704330 - L1Md_A LINE L1 0 6582 3024 5 1629 446 320 143 64 chr3 136895457 136896033 -22703750 + L2a LINE L2 2803 3425 -1 5 1629 1237 276 69 44 chr3 136896105 136896469 -22703314 + MTEb LTR MaLR 7 379 0 5 1629 3618 299 62 75 chr3 136896469 136896907 -22702876 + MTEb-int LTR MaLR 1 453 -1127 5 1629 405 0 0 0 chr3 136896907 136896952 -22702831 + (GA)n Simple_repeat Simple_repeat 2 46 0 5 1629 3618 299 62 75 chr3 136896952 136897276 -22702507 + MTEb-int LTR MaLR 454 734 -846 5 1629 1088 116 3 14 chr3 136897276 136897627 -22702156 + (GAA)n Simple_repeat Simple_repeat 1 346 0 5 1629 3618 299 62 75 chr3 136897627 136898166 -22701617 + MTEb-int LTR MaLR 735 1289 -291 5 1629 482 315 13 20 chr3 136898172 136898324 -22701459 + MTEb-int LTR MaLR 1429 1579 -1 5 1629 853 295 60 73 chr3 136898325 136898709 -22701074 + MTEb LTR MaLR 1 379 0 5 1629 808 181 63 5 chr3 136898847 136899010 -22700773 - L1_Mur2 LINE L1 -3651 2226 2053 5 1629 405 0 0 0 chr3 136899010 136899055 -22700728 + (TG)n Simple_repeat Simple_repeat 2 46 0 5 1629 808 181 63 5 chr3 136899055 136899080 -22700703 - L1_Mur2 LINE L1 -3825 2052 2028 5 1629 3239 59 0 17 chr3 136899092 136899503 -22700280 - L1_Mus1 LINE L1 -1 6566 6163 5 1629 603 174 20 0 chr3 136899794 136899892 -22699891 - B3 SINE B2 -106 110 11 5 1629 6998 133 55 26 chr3 136900517 136902557 -22697226 + Lx LINE L1 4540 6654 0 5 1629 321 68 0 0 chr3 136902557 136902601 -22697182 + (GAAA)n Simple_repeat Simple_repeat 1 44 0 5 1629 441 95 0 0 chr3 136902773 136902836 -22696947 + (A)n Simple_repeat Simple_repeat 1 63 0 5 1629 2338 168 58 0 chr3 136902874 136903291 -22696492 - Lx4A LINE L1 -2 7056 6616 5 1629 3532 139 67 14 chr3 136903291 136903949 -22695834 + Lx4A LINE L1 5901 6593 -465 5 1629 486 0 0 0 chr3 136905156 136905210 -22694573 + (TTTTG)n Simple_repeat Simple_repeat 2 55 0 5 1629 1880 30 0 65 chr3 136906667 136906915 -22692868 + L1Md_T LINE L1 6350 6581 -1 5 1629 222 118 0 0 chr3 136906938 136906972 -22692811 + (A)n Simple_repeat Simple_repeat 1 34 0 5 1629 243 146 0 0 chr3 136907640 136907681 -22692102 + (A)n Simple_repeat Simple_repeat 1 41 0 5 1629 794 94 2 58 chr3 136907776 136907913 -22691870 - B1_Mus1 SINE Alu 0 148 20 5 1629 1276 141 65 84 chr3 136908256 136908519 -22691264 + RMER6C LTR ERVK 433 690 0 5 1629 819 55 0 0 chr3 136909218 136909327 -22690456 + (GGGAGA)n Simple_repeat Simple_repeat 1 109 0 5 1629 1028 221 16 8 chr3 136909394 136909636 -22690147 + Lx4B LINE L1 6187 6430 -628 5 1629 195 215 0 0 chr3 136909779 136909844 -22689939 + (TATG)n Simple_repeat Simple_repeat 3 67 0 5 1629 13203 72 12 2 chr3 136910281 136912174 -22687609 - L1Md_F2 LINE L1 -848 5485 3560 5 1629 1126 72 0 7 chr3 136912165 136912320 -22687463 + L1Md_F2 LINE L1 5433 5586 -297 5 1629 7464 62 27 1 chr3 136912321 136913290 -22686493 + L1Md_F2 LINE L1 5588 6581 -1 5 1629 417 295 34 80 chr3 136913499 136913761 -22686022 + ERVL-B4-int LTR ERVL 4211 4460 -1254 5 1629 593 303 71 46 chr3 136913787 136914026 -22685757 - ORR1E LTR MaLR -113 246 2 5 1629 1977 294 115 35 chr3 136914026 136914810 -22684973 - MTE-int LTR MaLR -52 1528 579 5 1629 1313 224 61 39 chr3 136914875 136915205 -22684578 - ORR1B2 LTR MaLR 0 367 31 5 1629 270 216 176 0 chr3 136915222 136915296 -22684487 - MER2 DNA MER2_type -245 100 14 5 1629 2955 83 2 8 chr3 136915577 136915979 -22683804 + MTB LTR MaLR 1 400 0 5 1629 192 382 28 47 chr3 136916270 136916377 -22683406 + L2a LINE L2 2979 3083 -343 5 1629 508 308 75 0 chr3 136917210 136917338 -22682445 + B3 SINE B2 3 140 -76 5 1629 2201 201 85 214 chr3 136917338 136917546 -22682237 + RLTR40 LTR ERVK 1 133 -684 5 1629 1201 48 0 0 chr3 136917546 136917693 -22682090 - B1_Mus2 SINE Alu 0 147 1 5 1629 2201 201 85 214 chr3 136917693 136918414 -22681369 + RLTR40 LTR ERVK 134 810 -7 5 1629 250 241 121 0 chr3 136918419 136918477 -22681306 + B3 SINE B2 129 193 -23 5 1629 310 357 32 0 chr3 136918697 136918823 -22680960 + B1F SINE Alu 17 146 -3 5 1629 274 262 20 72 chr3 136919026 136919178 -22680605 + Lx6 LINE L1 7290 7433 -27 5 1629 304 179 38 95 chr3 136920829 136920934 -22678849 - RLTR10 LTR ERVK 0 390 292 5 1629 1376 35 6 0 chr3 136920958 136921130 -22678653 - RLTR10-int LTR ERVK -1774 213 41 5 1629 2867 54 52 0 chr3 136921142 136921511 -22678272 - RLTR10 LTR ERVK -2 388 1 5 1629 503 274 78 68 chr3 136921829 136921978 -22677805 + MLT1B LTR MaLR 4 154 -236 5 1629 3358 43 2 0 chr3 136921978 136922373 -22677410 - MTA_Mm LTR MaLR 0 396 1 5 1629 503 304 73 70 chr3 136922373 136922516 -22677267 + MLT1B LTR MaLR 155 295 -172 5 1629 1012 347 89 55 chr3 136922586 136923488 -22676295 + MLT1B-int LTR MaLR 5 1042 -329 5 1629 237 65 0 0 chr3 136923488 136923519 -22676264 + (TTTG)n Simple_repeat Simple_repeat 1 31 0 5 1629 1012 352 91 62 chr3 136923519 136923821 -22675962 + MLT1B-int LTR MaLR 1043 1370 -1 5 1629 710 331 63 46 chr3 136923827 136924178 -22675605 + MLT1B LTR MaLR 6 362 -28 5 1629 770 275 9 9 chr3 136924194 136924407 -22675376 - B3 SINE B2 -3 213 1 5 1629 342 284 239 0 chr3 136926159 136926381 -22673402 + L1M2 LINE L1 3401 3675 -2468 5 1629 230 282 27 27 chr3 136926411 136926484 -22673299 + B4A SINE B4 2 74 -218 5 1629 276 279 46 37 chr3 136926721 136926829 -22672954 + LTR40b LTR ERVL 352 460 -2 5 1629 355 284 67 52 chr3 136926877 136927119 -22672664 - MLT1C LTR MaLR -8 497 250 5 1629 2653 243 65 101 chr3 136927489 136928381 -22671402 + RMER13A LTR ERVK 1 860 0 5 1629 646 325 43 69 chr3 136928662 136928939 -22670844 - MLT1D LTR MaLR -10 495 226 5 1629 288 0 0 0 chr3 136929604 136929636 -22670147 + (TG)n Simple_repeat Simple_repeat 1 32 0 5 1629 246 291 101 86 chr3 136930349 136930488 -22669295 + MLT1A LTR MaLR 1 141 -224 5 1629 374 319 67 97 chr3 136931564 136931863 -22667920 - B4 SINE B4 0 292 3 5 1629 650 114 89 8 chr3 136932834 136932958 -22666825 + Lx4A LINE L1 6923 7056 -2 5 1629 188 260 102 74 chr3 136933357 136933465 -22666318 + L3 LINE CR1 4090 4200 -289 5 1629 594 109 0 0 chr3 136933511 136933612 -22666171 + (TG)n Simple_repeat Simple_repeat 1 101 0 5 1629 23 0 0 0 chr3 136934142 136934165 -22665618 + AT_rich Low_complexity Low_complexity 1 23 0 5 1629 1826 218 52 10 chr3 136934623 136935008 -22664775 + MTD LTR MaLR 10 410 -9 5 1629 315 63 48 0 chr3 136935228 136935291 -22664492 + (TTTTTG)n Simple_repeat Simple_repeat 3 68 0 5 1629 368 291 41 34 chr3 136935363 136935509 -22664274 - MIRb SINE MIR -44 224 78 5 1629 393 185 185 0 chr3 136935748 136935878 -22663905 - Lx9 LINE L1 -84 7560 7407 5 1629 531 198 9 0 chr3 136935888 136935999 -22663784 + Lx9 LINE L1 7108 7219 -425 5 1629 213 121 0 0 chr3 136936020 136936053 -22663730 + (GAAAA)n Simple_repeat Simple_repeat 2 34 0 5 1629 259 347 97 32 chr3 136936974 136937265 -22662518 - MLT1A LTR MaLR -52 356 1 5 1629 228 360 58 0 chr3 136937323 136937409 -22662374 - Charlie12 DNA MER1_type -2776 97 7 5 1629 1858 284 32 18 chr3 136937495 136938125 -22661658 - Lx8 LINE L1 -9 7464 6826 5 1629 1332 165 132 8 chr3 136939552 136939856 -22659927 - ORR1B2 LTR MaLR 0 367 2 5 1629 474 348 44 69 chr3 136940855 136941292 -22658491 + MLT2B2 LTR ERVL 9 513 -2 5 1629 1140 83 0 0 chr3 136941684 136941829 -22657954 + B1_Mus2 SINE Alu 3 147 0 5 1629 248 77 0 25 chr3 136941836 136941876 -22657907 + (TA)n Simple_repeat Simple_repeat 1 39 0 5 1629 3388 83 2 4 chr3 136941876 136942336 -22657447 + L1_Mus2 LINE L1 6108 6566 0 5 1629 310 284 0 0 chr3 136942451 136942539 -22657244 + MER53 DNA hAT 1 88 -105 5 1629 198 0 0 0 chr3 136942617 136942639 -22657144 + (CAAAA)n Simple_repeat Simple_repeat 1 22 0 5 1629 844 233 20 111 chr3 136942639 136942982 -22656801 + Lx9 LINE L1 7308 7619 -25 5 1629 2293 123 15 6 chr3 136944560 136944894 -22654889 + IAPLTR1a_Mm LTR ERVK 1 337 0 5 1629 20831 45 42 16 chr3 136944894 136947492 -22652291 + IAPEz-int LTR ERVK 8 2674 -3807 5 1629 9040 41 9 5 chr3 136947467 136948542 -22651241 + IAPEz-int LTR ERVK 5400 6479 -2 5 1629 2293 123 15 6 chr3 136948544 136948878 -22650905 + IAPLTR1a_Mm LTR ERVK 1 337 0 5 1629 34 24 0 0 chr3 136950404 136950445 -22649338 + AT_rich Low_complexity Low_complexity 1 41 0 5 1629 2170 80 132 113 chr3 136950458 136950882 -22648901 - RLTR44E LTR ERVK -5 447 16 5 1629 597 119 0 0 chr3 136950944 136951045 -22648738 + (CAAAA)n Simple_repeat Simple_repeat 2 102 0 6 1629 765 200 52 0 chr3 136951257 136951392 -22648391 + B1_Mur1 SINE Alu 3 144 -5 6 1629 1066 252 80 23 chr3 136951539 136951888 -22647895 - Lx8 LINE L1 -2 7471 7103 6 1629 250 234 19 0 chr3 136953885 136953992 -22645791 + (TA)n Simple_repeat Simple_repeat 1 109 0 6 1629 493 346 16 46 chr3 136954103 136954203 -22645580 - MER5A DNA MER1_type -1 188 87 6 1629 4394 123 59 67 chr3 136954203 136954888 -22644895 - RMER6A LTR ERVK 0 756 59 6 1629 234 0 0 0 chr3 136954888 136954914 -22644869 + (TTGG)n Simple_repeat Simple_repeat 2 27 0 6 1629 4394 123 59 67 chr3 136954914 136954988 -22644795 - RMER6A LTR ERVK -698 58 3 6 1629 493 346 16 46 chr3 136954988 136955081 -22644702 - MER5A DNA MER1_type -103 86 1 6 1629 546 165 0 0 chr3 136955239 136955342 -22644441 + CT-rich Low_complexity Low_complexity 3 105 0 6 1629 1149 123 0 0 chr3 136955344 136955523 -22644260 + (TTC)n Simple_repeat Simple_repeat 2 180 0 6 1629 320 351 90 0 chr3 136955529 136955717 -22644066 + L2a LINE L2 3041 3245 -181 6 1629 25 51 0 0 chr3 136956813 136956852 -22642931 + AT_rich Low_complexity Low_complexity 1 39 0 6 1629 384 59 0 0 chr3 136957304 136957355 -22642428 + (TG)n Simple_repeat Simple_repeat 2 52 0 6 1629 535 288 19 32 chr3 136957565 136957723 -22642060 + B3A SINE B2 61 216 0 6 1629 1224 51 0 0 chr3 136957934 136958072 -22641711 + B1_Mm SINE Alu 1 138 -9 6 1629 319 353 81 0 chr3 136958974 136959110 -22640673 + Arthur1C DNA Tip100 1 147 -216 6 1629 444 290 106 21 chr3 136959202 136959512 -22640271 - MLT1A0 LTR MaLR -17 450 6 6 1629 862 259 124 41 chr3 136959512 136959875 -22639908 - MLT1A0-int LTR MaLR -6 1729 1337 6 1629 708 349 4 15 chr3 136960208 136960470 -22639313 - MLT1A0 LTR MaLR 0 365 107 6 1629 1499 82 0 0 chr3 136961691 136961886 -22637897 - L1Md_F2 LINE L1 -197 6385 6191 6 1629 541 86 0 61 chr3 136961886 136961985 -22637798 + L1Md_F2 LINE L1 6481 6573 -9 6 1629 426 20 0 0 chr3 136962915 136962966 -22636817 + (CA)n Simple_repeat Simple_repeat 2 52 0 6 1629 447 19 0 0 chr3 136962966 136963018 -22636765 + (GA)n Simple_repeat Simple_repeat 1 52 0 6 1629 936 95 6 22 chr3 136963018 136963201 -22636582 + (CAGA)n Simple_repeat Simple_repeat 1 180 0 6 1629 259 252 217 69 chr3 136963222 136963361 -22636422 + MLT1A LTR MaLR 162 329 -45 6 1629 863 285 72 47 chr3 136963361 136963722 -22636061 + ORR1D2 LTR MaLR 1 370 0 6 1629 259 252 217 69 chr3 136963722 136963757 -22636026 + MLT1A LTR MaLR 330 361 -13 6 1629 202 361 15 30 chr3 136964772 136964906 -22634877 - L2a LINE L2 -27 3399 3268 6 1629 306 67 0 0 chr3 136964918 136964963 -22634820 + (TCTA)n Simple_repeat Simple_repeat 2 46 0 6 1629 22 35 0 0 chr3 136964964 136964993 -22634790 + AT_rich Low_complexity Low_complexity 1 29 0 6 1629 296 381 18 24 chr3 136965003 136965167 -22634616 - RSINE1 SINE B4 0 165 3 6 1629 376 123 27 0 chr3 136965535 136965608 -22634175 + GA-rich Low_complexity Low_complexity 2 76 0 6 1629 186 103 0 0 chr3 136965748 136965777 -22634006 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 6 1629 788 309 112 50 chr3 136966180 136966660 -22633123 - MT2A LTR ERVL -8 525 16 6 1629 342 0 0 0 chr3 136966707 136966745 -22633038 + (CA)n Simple_repeat Simple_repeat 1 38 0 6 1629 283 308 64 23 chr3 136966770 136966995 -22632788 + L1MB4 LINE L1 5708 5943 -236 6 1629 307 315 58 37 chr3 136968846 136969087 -22630696 - RLTR15 LTR ERVK -67 292 47 6 1629 180 280 117 26 chr3 136969299 136969376 -22630407 - MIR SINE MIR -113 149 66 6 1630 1305 87 0 0 chr3 136970743 136970916 -22628867 + MusHAL1 LINE L1 1404 1576 -1136 6 1630 5242 187 73 15 chr3 136970916 136972778 -22627005 - L1VL4 LINE L1 -3284 2593 611 6 1630 186 43 0 0 chr3 136972957 136972980 -22626803 + (TC)n Simple_repeat Simple_repeat 2 24 0 6 1630 216 0 0 0 chr3 136972980 136973003 -22626780 + (TG)n Simple_repeat Simple_repeat 1 24 0 6 1630 649 332 116 23 chr3 136973027 136973286 -22626497 - B4A SINE B4 -5 287 5 6 1630 292 284 0 64 chr3 136974010 136974198 -22625585 + (TAGGG)n Simple_repeat Simple_repeat 4 179 0 6 1630 229 306 132 56 chr3 136974666 136975008 -22624775 - L3 LINE CR1 -1546 2943 2576 6 1630 856 310 75 19 chr3 136975032 136975307 -22624476 - L1M2 LINE L1 -867 5276 4982 6 1630 486 0 0 0 chr3 136975307 136975361 -22624422 + (TG)n Simple_repeat Simple_repeat 1 54 0 6 1630 856 310 75 19 chr3 136975361 136975496 -22624287 - L1M2 LINE L1 -1162 4981 4845 6 1630 228 193 34 34 chr3 136975496 136975555 -22624228 + B4A SINE B4 1 59 -233 6 1630 215 313 209 0 chr3 136976173 136976240 -22623543 + ID4 SINE ID 2 82 -1 6 1630 23 33 0 0 chr3 136976240 136976270 -22623513 + AT_rich Low_complexity Low_complexity 1 30 0 6 1630 444 321 28 93 chr3 136977217 136977399 -22622384 - B3A SINE B2 -5 193 24 6 1630 811 288 13 43 chr3 136977818 136978050 -22621733 - MER2 DNA MER2_type -6 339 115 6 1630 26 64 0 0 chr3 136978231 136978278 -22621505 + AT_rich Low_complexity Low_complexity 1 47 0 6 1630 360 0 0 0 chr3 136978381 136978421 -22621362 + (CA)n Simple_repeat Simple_repeat 2 41 0 6 1630 203 32 0 61 chr3 136978452 136978485 -22621298 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 6 1630 24 0 0 0 chr3 136978724 136978748 -22621035 + AT_rich Low_complexity Low_complexity 1 24 0 6 1630 188 35 35 0 chr3 136978754 136978783 -22621000 + (TTAA)n Simple_repeat Simple_repeat 4 33 0 6 1630 980 256 21 4 chr3 136978849 136979088 -22620695 - Lx7 LINE L1 -757 6939 6697 6 1630 3671 164 42 6 chr3 136979091 136979717 -22620066 + Lx4B LINE L1 6410 7057 -1 6 1630 1253 56 12 0 chr3 136980145 136980305 -22619478 - L1Md_F2 LINE L1 -1 6581 6420 6 1630 3007 47 17 3 chr3 136980305 136980667 -22619116 + L1Md_F2 LINE L1 6017 6383 -199 6 1630 504 350 108 38 chr3 136980692 136981138 -22618645 - MLT1G1 LTR MaLR 0 579 103 6 1630 183 42 0 0 chr3 136981286 136981310 -22618473 + (G)n Simple_repeat Simple_repeat 1 24 0 6 1630 180 163 0 0 chr3 136981320 136981363 -22618420 + (CAGAGA)n Simple_repeat Simple_repeat 2 44 0 6 1630 585 42 0 0 chr3 136981363 136981435 -22618348 + (GGGA)n Simple_repeat Simple_repeat 3 74 0 6 1630 279 0 0 0 chr3 136981762 136981793 -22617990 + (A)n Simple_repeat Simple_repeat 1 31 0 6 1630 7220 68 41 0 chr3 136981838 136982775 -22617008 + L1_Mus3 LINE L1 5659 6633 -5 6 1630 284 309 71 28 chr3 136985265 136985484 -22614299 + MIR SINE MIR 3 237 -31 6 1630 21 0 0 0 chr3 136986385 136986406 -22613377 + AT_rich Low_complexity Low_complexity 1 21 0 6 1630 362 281 147 39 chr3 136987000 136987285 -22612498 - Arthur1 DNA Tip100 -27 3920 3605 6 1630 336 83 0 0 chr3 136987347 136987395 -22612388 + (CA)n Simple_repeat Simple_repeat 1 48 0 6 1630 615 329 236 28 chr3 136987399 136988018 -22611765 - Arthur1 DNA Tip100 -3199 748 1 6 1630 2497 105 135 7 chr3 136988404 136988825 -22610958 + IAPLTR2_Mm LTR ERVK 1 475 0 6 1630 180 152 0 0 chr3 136989442 136989475 -22610308 + CT-rich Low_complexity Low_complexity 5 37 0 6 1630 194 242 15 0 chr3 136989500 136989566 -22610217 + C-rich Low_complexity Low_complexity 3 69 0 6 1630 556 194 8 8 chr3 136989568 136989698 -22610085 + CT-rich Low_complexity Low_complexity 3 132 0 6 1630 246 128 0 0 chr3 136990248 136990287 -22609496 + (GGA)n Simple_repeat Simple_repeat 3 41 0 6 1630 507 298 96 73 chr3 136990337 136990609 -22609174 - MTEa LTR MaLR -101 278 1 6 1630 2506 179 103 20 chr3 136991065 136991561 -22608222 - RMER13B LTR ERVK 0 908 372 6 1630 982 210 10 0 chr3 136991560 136991755 -22608028 - RMER13B LTR ERVK -711 197 1 6 1630 397 52 65 0 chr3 136991866 136991943 -22607840 + (TC)n Simple_repeat Simple_repeat 1 82 0 6 1630 1416 168 128 48 chr3 136994736 136994916 -22604867 - ORR1B2 LTR MaLR -1 366 155 6 1630 495 48 0 0 chr3 136994916 136994978 -22604805 + (GA)n Simple_repeat Simple_repeat 2 63 0 6 1630 1416 168 128 48 chr3 136994978 136995134 -22604649 - ORR1B2 LTR MaLR -213 154 4 6 1630 240 342 71 55 chr3 136996138 136996265 -22603518 - MLT1J2 LTR MaLR -32 416 288 6 1630 4403 47 2 0 chr3 136996368 136996898 -22602885 + L1Md_F3 LINE L1 5054 5584 -299 6 1630 8809 37 0 1 chr3 136996901 136997885 -22601898 + L1Md_F3 LINE L1 5588 6570 -14 6 1630 234 91 0 0 chr3 136998245 136998278 -22601505 + (CA)n Simple_repeat Simple_repeat 2 34 0 6 1630 430 270 109 16 chr3 136998451 136998579 -22601204 - B3A SINE B2 -55 143 4 6 1630 541 336 34 0 chr3 137000800 137000949 -22598834 - RSINE1 SINE B4 -10 155 2 1 1630 227 338 188 0 chr3 137001306 137001439 -22598344 + B4A SINE B4 3 160 -132 2 1630 273 280 71 51 chr3 137002577 137002675 -22597108 - RLTR25A LTR ERVK -482 621 522 3 1630 716 93 41 33 chr3 137002598 137002720 -22597063 - B1_Mus1 SINE Alu -25 123 1 4 1630 6171 74 5 8 chr3 137002721 137003556 -22596227 + L1Md_F2 LINE L1 5751 6582 0 5 1630 297 0 0 0 chr3 137004894 137004927 -22594856 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 6 1630 207 69 0 0 chr3 137005247 137005276 -22594507 + (TG)n Simple_repeat Simple_repeat 1 29 0 7 1630 195 42 0 0 chr3 137005862 137005886 -22593897 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 8 1630 1138 63 0 0 chr3 137005901 137006043 -22593740 - B1_Mus1 SINE Alu -5 143 2 9 1630 392 141 0 25 chr3 137006275 137006355 -22593428 + GA-rich Low_complexity Low_complexity 4 81 0 1 1630 981 74 0 0 chr3 137006379 137006514 -22593269 + (GA)n Simple_repeat Simple_repeat 1 135 0 1 1630 1240 12 30 0 chr3 137007256 137007422 -22592361 + (CA)n Simple_repeat Simple_repeat 2 172 0 1 1630 203 181 30 60 chr3 137008681 137008781 -22591002 + (TATAA)n Simple_repeat Simple_repeat 5 101 0 1 1630 1160 106 0 6 chr3 137009942 137010122 -22589661 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 1 1630 265 303 0 0 chr3 137010122 137010188 -22589595 + (TG)n Simple_repeat Simple_repeat 2 67 0 1 1630 490 313 145 35 chr3 137010212 137010467 -22589316 - B4A SINE B4 -8 284 2 1 1630 77 45 0 0 chr3 137012196 137012308 -22587475 + AT_rich Low_complexity Low_complexity 1 112 0 1 1630 530 256 30 30 chr3 137012341 137012474 -22587309 - B1_Mur1 SINE Alu -8 141 9 1 1630 261 0 0 0 chr3 137012885 137012914 -22586869 + (TG)n Simple_repeat Simple_repeat 2 30 0 1 1630 552 299 107 65 chr3 137013700 137013961 -22585822 - MTD LTR MaLR 0 419 148 2 1630 298 309 0 0 chr3 137013965 137014033 -22585750 - MTD LTR MaLR -238 181 114 2 1630 195 314 81 116 chr3 137014674 137014872 -22584911 + MIR3 SINE MIR 11 201 -7 2 1630 32 0 0 0 chr3 137016082 137016114 -22583669 + AT_rich Low_complexity Low_complexity 1 32 0 2 1630 432 271 137 41 chr3 137016912 137017058 -22582725 - RSINE1 SINE B4 -4 161 2 2 1630 598 280 149 88 chr3 137017174 137017503 -22582280 + ORR1E LTR MaLR 5 353 -6 2 1630 404 306 110 17 chr3 137019110 137019283 -22580500 - B3A SINE B2 -5 190 2 2 1630 2153 75 108 3 chr3 137020729 137021025 -22578758 - ORR1A2 LTR MaLR 0 327 1 2 1630 21 36 0 0 chr3 137021025 137021053 -22578730 + AT_rich Low_complexity Low_complexity 1 28 0 2 1630 1170 68 0 0 chr3 137021056 137021202 -22578581 + B1_Mm SINE Alu 2 147 0 2 1630 180 0 0 0 chr3 137021202 137021222 -22578561 + (A)n Simple_repeat Simple_repeat 1 20 0 2 1630 11332 15 0 0 chr3 137021297 137023309 -22576474 - L1Md_T LINE L1 0 6582 4571 3 1630 21 0 0 0 chr3 137023458 137023479 -22576304 + AT_rich Low_complexity Low_complexity 1 21 0 3 1630 495 295 39 8 chr3 137024360 137024490 -22575293 + B1F2 SINE Alu 16 149 0 3 1630 213 250 0 0 chr3 137024552 137024596 -22575187 + (CATA)n Simple_repeat Simple_repeat 3 46 0 3 1630 22 0 0 0 chr3 137025467 137025489 -22574294 + AT_rich Low_complexity Low_complexity 1 22 0 3 1630 5759 49 1 1 chr3 137025788 137026487 -22573296 + L1Md_F2 LINE L1 5863 6561 -21 3 1630 198 0 0 0 chr3 137026487 137026509 -22573274 + (TA)n Simple_repeat Simple_repeat 2 23 0 3 1630 26 30 0 0 chr3 137027616 137027649 -22572134 + AT_rich Low_complexity Low_complexity 1 33 0 3 1630 286 312 19 21 chr3 137029211 137029315 -22570468 - MIRb SINE MIR -149 119 25 3 1630 342 115 0 0 chr3 137029407 137029459 -22570324 + (TATG)n Simple_repeat Simple_repeat 2 53 0 3 1630 240 86 0 0 chr3 137030005 137030040 -22569743 + (TG)n Simple_repeat Simple_repeat 1 35 0 4 1630 21 0 0 0 chr3 137031836 137031857 -22567926 + AT_rich Low_complexity Low_complexity 1 21 0 4 1630 350 279 175 99 chr3 137032123 137032151 -22567632 - RMER15 LTR ERVL 0 575 537 4 1630 230 0 33 0 chr3 137032151 137032181 -22567602 + (CA)n Simple_repeat Simple_repeat 2 32 0 4 1630 258 32 0 0 chr3 137032181 137032211 -22567572 + (GA)n Simple_repeat Simple_repeat 2 32 0 4 1630 350 279 175 99 chr3 137032211 137032404 -22567379 - RMER15 LTR ERVL -39 536 337 4 1630 339 191 0 0 chr3 137032776 137032844 -22566939 + T-rich Low_complexity Low_complexity 1 68 0 4 1630 756 71 0 0 chr3 137034062 137034174 -22565609 + (GA)n Simple_repeat Simple_repeat 2 113 0 4 1630 1060 51 0 7 chr3 137034367 137034506 -22565277 + L1_Mus1 LINE L1 6430 6567 0 4 1630 1216 39 7 0 chr3 137034525 137034678 -22565105 + B2_Mm2 SINE B2 1 154 -41 4 1630 300 53 0 0 chr3 137034682 137034720 -22565063 + (TAAA)n Simple_repeat Simple_repeat 3 40 0 4 1630 345 100 0 0 chr3 137035164 137035214 -22564569 + (TA)n Simple_repeat Simple_repeat 2 51 0 5 1630 483 278 0 60 chr3 137036322 137036456 -22563327 + B1_Mur3 SINE Alu 3 128 -21 5 1630 481 257 91 39 chr3 137036766 137036920 -22562863 + B3 SINE B2 1 162 -54 5 1630 210 91 0 0 chr3 137036962 137036995 -22562788 + (A)n Simple_repeat Simple_repeat 1 33 0 5 1630 331 38 19 19 chr3 137037309 137037363 -22562420 + (TTTTG)n Simple_repeat Simple_repeat 2 55 0 5 1630 1152 54 0 0 chr3 137038765 137038913 -22560870 + (CA)n Simple_repeat Simple_repeat 1 148 0 5 1630 391 281 22 0 chr3 137039833 137039922 -22559861 - RSINE1 SINE B4 -74 91 1 5 1630 801 58 0 0 chr3 137039935 137040038 -22559745 + (GGAA)n Simple_repeat Simple_repeat 3 105 0 5 1630 7771 48 19 1 chr3 137040219 137041426 -22558357 - L1Md_F2 LINE L1 -12 6570 5342 5 1630 1234 93 11 27 chr3 137041461 137041649 -22558134 - B2_Mm2 SINE B2 -9 186 2 5 1630 22 56 0 0 chr3 137042406 137042442 -22557341 + AT_rich Low_complexity Low_complexity 1 36 0 6 1630 28 0 0 0 chr3 137042506 137042534 -22557249 + AT_rich Low_complexity Low_complexity 1 28 0 6 1630 318 80 0 0 chr3 137042925 137042975 -22556808 + (TG)n Simple_repeat Simple_repeat 2 51 0 6 1630 610 280 158 45 chr3 137042978 137043573 -22556210 - L1M3 LINE L1 -1900 4240 3579 6 1630 903 244 15 0 chr3 137044242 137044443 -22555340 - B3 SINE B2 -9 207 4 6 1630 481 273 0 0 chr3 137044861 137044960 -22554823 + B3A SINE B2 1 99 -99 6 1630 633 66 0 0 chr3 137044973 137045064 -22554719 + (TC)n Simple_repeat Simple_repeat 1 91 0 6 1630 396 0 0 0 chr3 137045066 137045110 -22554673 + (CA)n Simple_repeat Simple_repeat 2 45 0 6 1630 649 289 126 26 chr3 137045701 137046281 -22553502 - L1M3 LINE L1 -1098 5042 4405 6 1630 2680 92 55 2 chr3 137046452 137046855 -22552928 - L1_Mus4 LINE L1 -5 6631 6208 6 1630 26 0 0 0 chr3 137046909 137046935 -22552848 + AT_rich Low_complexity Low_complexity 1 26 0 7 1630 1026 273 162 24 chr3 137047360 137048115 -22551668 + L1MA6 LINE L1 5417 6275 -25 7 1630 24 53 0 0 chr3 137048122 137048160 -22551623 + AT_rich Low_complexity Low_complexity 1 38 0 7 1630 1864 298 96 36 chr3 137048895 137049754 -22550029 - L1M2 LINE L1 -994 5851 4937 7 1630 744 275 34 10 chr3 137049754 137049963 -22549820 - B3 SINE B2 -2 214 1 7 1630 1864 298 96 36 chr3 137049963 137050400 -22549383 - L1M2 LINE L1 -1909 4936 4478 7 1630 364 297 20 0 chr3 137050612 137050713 -22549070 - Lx8 LINE L1 -234 7239 7137 7 1630 917 284 61 23 chr3 137050720 137051143 -22548640 + Lx8 LINE L1 5507 5976 -1668 7 1630 440 338 132 25 chr3 137051280 137051962 -22547821 - L1M2 LINE L1 -3957 2892 2138 7 1630 202 73 24 24 chr3 137054163 137054205 -22545578 + (CAAAA)n Simple_repeat Simple_repeat 4 45 0 7 1630 187 338 42 14 chr3 137054213 137054285 -22545498 + MIRc SINE MIR 53 126 -142 7 1630 494 351 114 28 chr3 137055258 137055794 -22543989 + L1M5 LINE L1 4183 4764 -1382 7 1630 426 39 0 0 chr3 137056948 137057000 -22542783 + (TA)n Simple_repeat Simple_repeat 2 53 0 8 1630 943 273 109 63 chr3 137057007 137057637 -22542146 + L1MA9 LINE L1 5277 5935 -377 8 1630 251 347 0 14 chr3 137057654 137057727 -22542056 + PB1D10 SINE Alu 3 74 -43 8 1630 318 272 43 17 chr3 137057734 137057850 -22541933 + L1M4 LINE L1 4324 4442 -1704 8 1630 446 305 95 30 chr3 137058154 137058418 -22541365 + L1MD LINE L1 2997 3277 -2869 8 1630 231 272 116 15 chr3 137058555 137058753 -22541030 + L1MEf LINE L1 1198 1415 -4785 8 1630 329 264 156 67 chr3 137059129 137059308 -22540475 + B3A SINE B2 1 195 -3 8 1630 706 112 47 16 chr3 137059509 137059636 -22540147 + L1_Mur1 LINE L1 3540 3670 -2216 8 1630 1327 151 27 0 chr3 137060653 137060872 -22538911 - URR1B DNA MER1_type 0 225 1 8 1630 305 171 171 0 chr3 137060910 137060992 -22538791 + RCHARR1 DNA MER1_type 319 414 -560 8 1630 1728 88 17 0 chr3 137060992 137061232 -22538551 - L1Md_F2 LINE L1 -11 6571 6328 9 1630 1468 259 51 11 chr3 137061232 137061681 -22538102 + RCHARR1 DNA MER1_type 464 930 -44 8 1630 267 276 57 49 chr3 137062370 137062492 -22537291 + MLT1A1 LTR MaLR 7 129 -279 9 1630 443 284 100 61 chr3 137062754 137062934 -22536849 - RMER30 DNA MER1_type -2 200 14 9 1630 333 62 0 0 chr3 137063009 137063057 -22536726 + (GA)n Simple_repeat Simple_repeat 2 49 0 9 1630 604 283 40 17 chr3 137063576 137063752 -22536031 + B4A SINE B4 106 285 -7 9 1630 203 151 64 11 chr3 137063778 137063872 -22535911 + (CA)n Simple_repeat Simple_repeat 2 100 0 9 1630 330 231 43 32 chr3 137064822 137064916 -22534867 - BC1_Mm scRNA scRNA -57 95 1 9 1630 465 255 30 20 chr3 137064932 137065032 -22534751 - B1F1 SINE Alu -48 101 1 9 1630 3689 47 0 0 chr3 137066091 137066556 -22533227 - L1_Mus1 LINE L1 -123 6444 5980 9 1630 412 183 139 73 chr3 137068358 137068523 -22531260 + Lx8 LINE L1 7270 7445 -28 9 1630 392 293 156 29 chr3 137068636 137068832 -22530951 - MLT2B1 LTR ERVL -2 565 343 1 1630 469 320 141 60 chr3 137068863 137069112 -22530671 + B4A SINE B4 2 270 -22 1 1630 202 323 32 0 chr3 137069566 137069628 -22530155 + MIRm SINE MIR 84 147 -129 1 1630 312 27 0 0 chr3 137069931 137069968 -22529815 + (CATA)n Simple_repeat Simple_repeat 4 40 0 1 1630 35597 25 0 7 chr3 137070348 137075491 -22524292 + L1Md_T LINE L1 486 5586 -297 1 1630 8454 34 0 0 chr3 137075491 137076487 -22523296 + L1Md_T LINE L1 5587 6582 0 1 1630 282 106 0 0 chr3 137076490 137076537 -22523246 + (A)n Simple_repeat Simple_repeat 1 47 0 1 1630 331 240 0 20 chr3 137076767 137076865 -22522918 + Lx9 LINE L1 7388 7483 -161 1 1630 249 293 77 32 chr3 137076891 137077046 -22522737 - LTR16B2 LTR ERVL -92 370 209 1 1630 374 202 41 119 chr3 137077264 137077399 -22522384 + PB1D9 SINE Alu 8 138 -11 1 1630 484 310 69 0 chr3 137077827 137078030 -22521753 - MIR SINE MIR -43 219 3 1 1630 32 0 0 0 chr3 137079038 137079070 -22520713 + AT_rich Low_complexity Low_complexity 1 32 0 1 1630 2312 76 21 18 chr3 137080838 137081173 -22518610 - Lx2 LINE L1 -7 6990 6655 1 1630 209 33 0 32 chr3 137081345 137081376 -22518407 + (CAAAA)n Simple_repeat Simple_repeat 1 30 0 1 1630 30 27 0 0 chr3 137081625 137081662 -22518121 + AT_rich Low_complexity Low_complexity 1 37 0 1 1630 213 39 0 0 chr3 137082740 137082766 -22517017 + (TTTC)n Simple_repeat Simple_repeat 2 27 0 1 1630 225 65 0 0 chr3 137083507 137083538 -22516245 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1 1630 198 0 0 0 chr3 137084876 137084898 -22514885 + (A)n Simple_repeat Simple_repeat 1 22 0 1 1630 252 0 0 0 chr3 137085329 137085357 -22514426 + (TA)n Simple_repeat Simple_repeat 2 29 0 1 1630 1130 75 0 20 chr3 137086642 137086792 -22512991 + B1_Mus1 SINE Alu 2 148 0 1 1630 1176 68 0 13 chr3 137087967 137088116 -22511667 + B1_Mus2 SINE Alu 1 147 0 1 1630 300 155 0 0 chr3 137088116 137088187 -22511596 + A-rich Low_complexity Low_complexity 1 71 0 1 1630 1193 245 104 9 chr3 137088813 137089151 -22510632 - ORR1D2 LTR MaLR 0 370 1 1 1630 1116 82 0 0 chr3 137091910 137092056 -22507727 + B1_Mus1 SINE Alu 1 146 -2 1 1630 612 0 0 0 chr3 137092056 137092124 -22507659 + (TAAAA)n Simple_repeat Simple_repeat 2 69 0 1 1630 537 153 93 0 chr3 137092137 137092245 -22507538 - RMER6C LTR ERVK -566 154 1 1 1630 334 328 75 35 chr3 137092259 137092458 -22507325 + B4 SINE B4 70 276 -16 1 1630 513 0 0 0 chr3 137095835 137095892 -22503891 + (TAGA)n Simple_repeat Simple_repeat 1 57 0 1 1630 535 306 62 42 chr3 137096029 137096288 -22503495 + MER2 DNA MER2_type 41 304 -41 1 1630 258 350 40 8 chr3 137096547 137096671 -22503112 - ORR1E LTR MaLR -223 136 9 1 1630 279 322 92 8 chr3 137096796 137096915 -22502868 + B1F SINE Alu 5 133 -16 1 1630 247 250 31 20 chr3 137096916 137097014 -22502769 + GA-rich Low_complexity Low_complexity 1 99 0 1 1630 189 0 0 0 chr3 137097024 137097045 -22502738 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 1 1630 539 15 15 0 chr3 137098289 137098357 -22501426 + (TAGA)n Simple_repeat Simple_repeat 1 69 0 1 1630 325 303 98 51 chr3 137098426 137098917 -22500866 + L1M5 LINE L1 3608 4121 -2025 1 203 36988 51 8 8 chr3 137099148 137105623 -22494160 - L1Md_T LINE L1 0 6582 108 1 1631 599 231 20 4 chr3 137106018 137106245 -22493538 - Lx7 LINE L1 -1586 5887 5625 1 1631 369 234 31 39 chr3 137106245 137106374 -22493409 + L1MA6 LINE L1 3513 3669 -2471 1 1631 312 125 0 0 chr3 137106375 137106439 -22493344 + (TC)n Simple_repeat Simple_repeat 1 64 0 1 1631 411 132 0 0 chr3 137106438 137106506 -22493277 + (CA)n Simple_repeat Simple_repeat 1 68 0 1 1631 1263 303 139 31 chr3 137106536 137107809 -22491974 + L1MA6 LINE L1 3735 5149 -994 1 1631 387 0 0 0 chr3 137107809 137107852 -22491931 + (GA)n Simple_repeat Simple_repeat 2 44 0 1 1631 1263 303 139 31 chr3 137107852 137107965 -22491818 + L1MA6 LINE L1 5150 5270 -873 1 1631 4444 135 9 38 chr3 137107962 137108333 -22491450 + L1Md_A LINE L1 521 886 -5838 1 1631 1102 21 21 0 chr3 137108333 137108473 -22491310 + (TAGA)n Simple_repeat Simple_repeat 2 144 0 1 1631 27992 63 2 2 chr3 137108473 137112976 -22486807 + L1Md_A LINE L1 887 5378 -505 1 1631 3366 47 30 12 chr3 137112977 137113405 -22486378 + RLTR10C LTR ERVK 1 436 0 1 1631 1381 55 0 6 chr3 137113405 137113586 -22486197 + MMERVK10C-int LTR ERVK 1 180 -7401 1 1631 245 191 0 0 chr3 137113586 137113628 -22486155 + RLTR27 LTR ERVK 231 272 -37 1 1631 402 0 0 0 chr3 137113628 137113674 -22486109 + MMERVK10C-int LTR ERVK 222 267 -7314 1 1631 265 208 13 13 chr3 137113756 137113834 -22485949 + A-rich Low_complexity Low_complexity 2 79 0 1 1631 299 111 0 0 chr3 137113834 137113879 -22485904 + MMERVK10C-int LTR ERVK 93 137 -6405 1 1631 18249 46 0 0 chr3 137113882 137116383 -22483400 + MMERVK10C-int LTR ERVK 3512 5810 -1771 1 1631 6872 52 0 66 chr3 137116374 137117371 -22482412 + MMERVK10C-int LTR ERVK 6651 7581 0 1 1631 3496 45 28 9 chr3 137117371 137117799 -22481984 + RLTR10C LTR ERVK 1 436 0 1 1631 1729 38 0 0 chr3 137117799 137118012 -22481771 + L1Md_F2 LINE L1 5374 5586 -297 1 1631 7965 55 1 0 chr3 137118012 137119006 -22480777 + L1Md_F2 LINE L1 5587 6581 -1 1 1631 9244 50 1 1 chr3 137119008 137120209 -22479574 + L1Md_F3 LINE L1 4386 5586 -297 1 1631 7637 51 29 5 chr3 137120209 137121182 -22478601 + L1Md_F3 LINE L1 5587 6582 -2 1 1631 706 308 92 48 chr3 137121223 137121875 -22477908 + L1MA6 LINE L1 5256 5936 -364 1 1631 189 229 0 0 chr3 137121900 137121948 -22477835 + (TA)n Simple_repeat Simple_repeat 2 49 0 1 1631 1624 201 16 29 chr3 137122149 137122524 -22477259 - Lx9 LINE L1 -818 6826 6457 1 1631 240 307 165 26 chr3 137122810 137123004 -22476779 + L1ME1 LINE L1 5879 6099 -80 1 1631 486 226 23 0 chr3 137123075 137123208 -22476575 - RMER1C Other Other -15 1327 1192 1 1631 315 322 109 45 chr3 137123208 137123378 -22476405 + MTE2a LTR MaLR 40 239 -180 1 1631 8099 119 10 17 chr3 137123386 137125595 -22474188 - L1_Mus4 LINE L1 -5 6631 4451 1 1631 484 141 0 0 chr3 137125594 137125672 -22474111 + L1_Mur2 LINE L1 4360 4437 -1440 1 1631 557 254 118 32 chr3 137125672 137125859 -22473924 + MTE2a LTR MaLR 172 374 -5 1 1631 239 342 18 18 chr3 137126323 137126487 -22473296 + (TATATG)n Simple_repeat Simple_repeat 1 164 0 1 1631 311 331 101 35 chr3 137127021 137127278 -22472505 + HAL1-2a_MD LINE L1 2209 2482 -542 1 1631 564 143 33 8 chr3 137127287 137127407 -22472376 + CT-rich Low_complexity Low_complexity 5 127 0 1 1631 991 295 51 11 chr3 137127806 137128162 -22471621 - ORR1D2 LTR MaLR 0 370 1 1 1631 206 108 54 0 chr3 137128762 137128799 -22470984 + (TCTG)n Simple_repeat Simple_repeat 4 42 0 1 1631 261 149 29 15 chr3 137129406 137129474 -22470309 + CT-rich Low_complexity Low_complexity 3 71 0 1 1631 1688 95 0 8 chr3 137130839 137131083 -22468700 - L1_Mus2 LINE L1 -33 6533 6292 1 1631 743 41 0 0 chr3 137131084 137131182 -22468601 + L1_Mus2 LINE L1 6468 6565 -1 1 1631 58 54 0 0 chr3 137131183 137131276 -22468507 + AT_rich Low_complexity Low_complexity 1 93 0 1 1631 21 0 0 0 chr3 137132086 137132107 -22467676 + AT_rich Low_complexity Low_complexity 1 21 0 1 1631 1371 52 0 0 chr3 137132196 137132369 -22467414 + L1Md_F2 LINE L1 5414 5586 -297 1 1631 8403 32 1 3 chr3 137132369 137133367 -22466416 + L1Md_F2 LINE L1 5587 6582 0 1 1631 1327 296 30 17 chr3 137133698 137134059 -22465724 + MTEb LTR MaLR 14 379 0 1 1631 965 282 56 26 chr3 137134059 137134391 -22465392 + MTEb-int LTR MaLR 1 316 -1054 1 1631 791 272 92 37 chr3 137135108 137135177 -22464606 - B4A SINE B4 -2 290 217 1 1631 549 0 0 0 chr3 137135177 137135238 -22464545 + (TG)n Simple_repeat Simple_repeat 2 62 0 1 1631 791 272 92 37 chr3 137135238 137135439 -22464344 - B4A SINE B4 -76 216 5 1 1631 2653 59 3 48 chr3 137137538 137137911 -22461872 - L1_Mus2 LINE L1 0 6566 6211 1 1631 2054 94 0 7 chr3 137137911 137138203 -22461580 + L1_Mm LINE L1 4663 4954 -929 1 1631 261 194 115 77 chr3 137138245 137138323 -22461460 - MLT1B LTR MaLR -129 261 181 1 1631 232 241 0 0 chr3 137138335 137138389 -22461394 + (TCTG)n Simple_repeat Simple_repeat 2 55 0 1 1631 240 297 15 15 chr3 137138405 137138470 -22461313 - ID4_ SINE ID -17 66 2 1 1631 636 14 0 0 chr3 137138625 137138698 -22461085 + (TC)n Simple_repeat Simple_repeat 2 74 0 1 1631 262 246 72 0 chr3 137138768 137138837 -22460946 - Lx8 LINE L1 -228 7245 7172 1 1631 2521 103 11 0 chr3 137138891 137139250 -22460533 + Lx2 LINE L1 6633 6995 -2 1 1631 342 196 19 10 chr3 137139255 137139358 -22460425 + GA-rich Low_complexity Low_complexity 2 105 0 1 1631 6957 146 6 15 chr3 137139480 137140702 -22459081 + L1_Mm LINE L1 4638 5848 -35 1 1631 334 214 29 12 chr3 137140702 137140788 -22458995 + PB1D10 SINE Alu 25 126 -1 1 1631 401 275 144 90 chr3 137141381 137141569 -22458214 + B3A SINE B2 1 198 0 1 1631 622 254 0 0 chr3 137143814 137143936 -22455847 - ID_B1 SINE B4 -7 217 96 1 1631 21 0 0 0 chr3 137144542 137144563 -22455220 + AT_rich Low_complexity Low_complexity 1 21 0 1 1631 377 350 62 78 chr3 137144606 137144978 -22454805 - Charlie19a DNA Charlie -1 385 20 1 1631 819 129 0 0 chr3 137145281 137145413 -22454370 + (GA)n Simple_repeat Simple_repeat 1 132 0 1 1631 363 319 42 42 chr3 137146535 137146848 -22452935 - MTEa LTR MaLR -2 377 45 1 1631 29659 81 13 1 chr3 137147278 137152259 -22447524 + L1Md_F LINE L1 393 5431 -452 1 1631 289 309 12 0 chr3 137153077 137153161 -22446622 - PB1D10 SINE Alu -28 89 5 1 1631 228 296 74 23 chr3 137154341 137154517 -22445266 + L1M5 LINE L1 3417 3601 -2545 1 1631 2456 287 78 35 chr3 137154651 137155601 -22444182 + Lx8 LINE L1 6346 7336 -137 1 1631 265 315 24 24 chr3 137155640 137155809 -22443974 + L1MD LINE L1 3684 3852 -2294 1 1631 180 111 0 0 chr3 137155931 137155958 -22443825 + (A)n Simple_repeat Simple_repeat 1 27 0 1 1631 276 335 110 30 chr3 137156247 137156447 -22443336 - MIR SINE MIR -24 238 23 1 1631 44 20 0 0 chr3 137156745 137156796 -22442987 + AT_rich Low_complexity Low_complexity 1 51 0 1 1631 269 247 48 51 chr3 137157532 137157655 -22442128 - MIR3 SINE MIR -17 191 72 1 1631 386 228 136 88 chr3 137158060 137158185 -22441598 + MER5A1 DNA MER1_type 23 153 -13 1 1631 217 293 122 0 chr3 137158238 137158320 -22441463 - MER5B DNA MER1_type -20 158 67 1 1631 253 218 44 44 chr3 137158448 137158539 -22441244 + Charlie7a DNA MER1_type 34 124 -148 1 1631 2723 234 115 28 chr3 137159107 137160150 -22439633 + Lx9 LINE L1 5860 7090 -554 1 1631 11903 158 14 5 chr3 137160187 137160820 -22438963 + Lx LINE L1 3699 4346 -1537 1 1631 4806 124 102 14 chr3 137160820 137161491 -22438292 + RMER17A2 LTR ERVK 1 737 -169 2 1631 405 0 0 0 chr3 137161491 137161536 -22438247 + (CA)n Simple_repeat Simple_repeat 1 45 0 2 1631 4806 124 102 14 chr3 137161536 137161697 -22438086 + RMER17A2 LTR ERVK 738 905 -1 2 1631 11903 133 23 9 chr3 137161697 137163979 -22435804 + Lx LINE L1 4347 6654 0 1 1631 332 200 14 0 chr3 137163991 137164061 -22435722 + Lx9 LINE L1 7111 7181 -463 1 1631 19249 80 195 3 chr3 137164076 137168432 -22431351 + L1Md_F2 LINE L1 387 5586 -297 2 1631 8510 52 1 7 chr3 137168433 137169434 -22430349 + L1Md_F2 LINE L1 5588 6582 0 2 1631 1143 208 94 0 chr3 137169434 137169679 -22430104 + Lx9 LINE L1 7196 7463 -181 1 1631 327 182 131 0 chr3 137169715 137169814 -22429969 + Lx9 LINE L1 7531 7642 -2 1 1631 23 54 0 0 chr3 137169824 137169861 -22429922 + AT_rich Low_complexity Low_complexity 1 37 0 2 1631 378 335 73 23 chr3 137171055 137171294 -22428489 - MIR SINE MIR -6 262 6 2 1631 465 19 0 0 chr3 137171319 137171373 -22428410 + (TG)n Simple_repeat Simple_repeat 1 54 0 2 1631 671 291 84 49 chr3 137171457 137171862 -22427921 - L1MB2 LINE L1 -271 5900 5482 2 1631 967 79 0 0 chr3 137172244 137172370 -22427413 + B1_Mm SINE Alu 22 147 0 2 1631 510 149 0 0 chr3 137172370 137172457 -22427326 + (GAAA)n Simple_repeat Simple_repeat 2 88 0 2 1631 503 232 23 14 chr3 137172457 137172629 -22427154 + Lx6 LINE L1 5805 5977 -1719 2 1631 2136 226 52 9 chr3 137172600 137173042 -22426741 + Lx6 LINE L1 6988 7448 -12 2 1631 624 62 0 0 chr3 137173072 137173153 -22426630 + (GGAAA)n Simple_repeat Simple_repeat 3 83 0 2 1631 562 259 178 11 chr3 137173592 137173772 -22426011 - B3 SINE B2 -6 210 1 2 1631 241 349 143 21 chr3 137174694 137174931 -22424852 - MIRb SINE MIR 0 268 3 2 1631 558 341 46 46 chr3 137176029 137176290 -22423493 + MLT1K LTR MaLR 311 571 -24 2 1631 355 279 20 73 chr3 137176363 137176514 -22423269 - LTR33 LTR ERVL -21 494 352 2 1631 686 325 97 45 chr3 137177015 137177457 -22422326 - ERVL-E-int LTR ERVL -2130 3537 3073 2 1631 413 320 112 85 chr3 137178474 137178665 -22421118 - L2 LINE L2 -696 2723 2550 2 1631 605 246 122 6 chr3 137178665 137178845 -22420938 + B3 SINE B2 1 201 -15 2 1631 413 320 112 85 chr3 137178845 137179090 -22420693 - L2 LINE L2 -870 2549 2275 2 1631 1040 120 226 11 chr3 137179201 137179387 -22420396 + URR1A DNA MER1_type 1 226 0 2 1631 378 0 0 0 chr3 137179521 137179563 -22420220 + (TG)n Simple_repeat Simple_repeat 1 42 0 2 1631 459 0 0 0 chr3 137179563 137179613 -22420170 + (GA)n Simple_repeat Simple_repeat 1 51 0 2 1631 1170 266 49 47 chr3 137179725 137180138 -22419645 - MTD LTR MaLR -14 405 2 2 1631 1264 319 43 12 chr3 137180146 137180663 -22419120 - Lx8 LINE L1 -217 7256 6724 2 1631 319 306 72 36 chr3 137182022 137182188 -22417595 - HAL1-3A_ME LINE L1 -402 2456 2285 2 1631 249 83 0 0 chr3 137182209 137182245 -22417538 + (TTCTC)n Simple_repeat Simple_repeat 3 38 0 2 1631 308 267 163 24 chr3 137182478 137182601 -22417182 - B1F SINE Alu -8 141 2 2 1631 311 154 15 0 chr3 137184437 137184502 -22415281 + CT-rich Low_complexity Low_complexity 1 66 0 2 1631 304 256 113 48 chr3 137184665 137184833 -22414950 - Lx7 LINE L1 -449 7247 7069 2 1631 690 69 0 0 chr3 137184833 137184934 -22414849 + (TG)n Simple_repeat Simple_repeat 2 102 0 2 1631 1660 209 50 9 chr3 137184950 137185293 -22414490 - Lx7 LINE L1 -742 6954 6598 2 1631 236 222 16 16 chr3 137185412 137185476 -22414307 + CT-rich Low_complexity Low_complexity 2 65 0 2 1631 213 254 80 16 chr3 137186350 137186439 -22413344 - MIR SINE MIR -121 147 47 2 1631 1213 272 155 53 chr3 137186457 137186592 -22413191 + RLTR20D LTR ERVK 51 178 -390 2 1631 431 0 0 36 chr3 137186592 137186648 -22413135 + (TTTTG)n Simple_repeat Simple_repeat 2 55 0 2 1631 1213 272 155 53 chr3 137186648 137186832 -22412951 + RLTR20D LTR ERVK 179 422 -146 2 1631 450 0 0 0 chr3 137186832 137186882 -22412901 + (TG)n Simple_repeat Simple_repeat 2 51 0 2 1631 1213 272 155 53 chr3 137186882 137187031 -22412752 + RLTR20D LTR ERVK 423 568 0 2 1631 838 322 55 15 chr3 137187641 137187915 -22411868 + B4A SINE B4 8 292 0 2 1631 239 333 0 0 chr3 137187917 137187983 -22411800 + (CA)n Simple_repeat Simple_repeat 1 66 0 2 1631 370 226 243 34 chr3 137190037 137190243 -22409540 + L1MB4 LINE L1 5926 6174 -6 2 1631 180 0 0 0 chr3 137191225 137191245 -22408538 + (TG)n Simple_repeat Simple_repeat 1 20 0 2 1631 3476 86 6 15 chr3 137191305 137191775 -22408008 - L1_Mus3 LINE L1 0 6638 6173 2 1631 402 100 0 0 chr3 137192498 137192558 -22407225 + (CA)n Simple_repeat Simple_repeat 2 61 0 2 1631 4976 62 47 2 chr3 137195202 137195815 -22403968 - L1_Mus1 LINE L1 0 6567 5927 2 1631 1033 94 19 12 chr3 137195827 137195989 -22403794 - URR1A DNA MER1_type 0 226 64 2 1631 325 200 0 18 chr3 137196124 137196180 -22403603 + L1M5 LINE L1 5516 5570 -624 2 1631 3583 284 98 77 chr3 137196190 137197572 -22402211 + Lx8 LINE L1 5608 6989 -484 2 1631 1059 139 0 0 chr3 137197572 137197752 -22402031 + (GA)n Simple_repeat Simple_repeat 1 180 0 2 1631 879 89 12 25 chr3 137197752 137197913 -22401870 + (GGAGA)n Simple_repeat Simple_repeat 2 160 0 2 1631 3583 284 98 77 chr3 137197913 137198126 -22401657 + Lx8 LINE L1 6990 7241 -232 2 1631 1289 139 119 0 chr3 137198126 137198328 -22401455 + URR1A DNA MER1_type 1 226 0 2 1631 3583 284 98 77 chr3 137198328 137198555 -22401228 + Lx8 LINE L1 7242 7468 -5 2 1631 756 305 9 5 chr3 137199397 137199611 -22400172 - B4A SINE B4 -65 227 13 2 1631 252 288 8 8 chr3 137199793 137199912 -22399871 + (CAG)n Simple_repeat Simple_repeat 3 121 0 2 1631 213 343 62 41 chr3 137200114 137200260 -22399523 - MIR SINE MIR -21 241 93 2 1631 773 185 73 0 chr3 137200978 137201129 -22398654 - URR1B DNA MER1_type -5 220 59 2 1631 373 187 71 12 chr3 137202908 137203076 -22396707 + (TA)n Simple_repeat Simple_repeat 2 179 0 2 1631 210 129 48 0 chr3 137203091 137203153 -22396630 + (TATAA)n Simple_repeat Simple_repeat 5 69 0 2 1631 224 152 60 10 chr3 137203295 137203395 -22396388 + (TA)n Simple_repeat Simple_repeat 1 105 0 2 1631 311 259 142 63 chr3 137203842 137203905 -22395878 + MIRc SINE MIR 42 107 -161 2 1631 462 79 0 0 chr3 137203905 137203968 -22395815 + (CCTA)n Simple_repeat Simple_repeat 2 64 0 2 1631 311 246 159 60 chr3 137203968 137204076 -22395707 + MIRc SINE MIR 108 230 -38 2 1631 428 297 92 20 chr3 137205406 137205602 -22394181 - MTE2b LTR MaLR -2 377 168 2 1631 12759 119 20 11 chr3 137205631 137208408 -22391375 - L1_Mus4 LINE L1 0 6636 3833 2 1631 670 302 41 15 chr3 137208409 137208604 -22391179 - MTE2b LTR MaLR -179 200 1 2 1631 1962 195 111 3 chr3 137209030 137209410 -22390373 - MTC LTR MaLR 0 421 1 2 1631 312 70 0 0 chr3 137209634 137209677 -22390106 + (TG)n Simple_repeat Simple_repeat 2 44 0 2 1631 729 268 57 49 chr3 137209704 137209951 -22389832 - B4A SINE B4 -42 250 2 2 1631 535 174 0 0 chr3 137209971 137210063 -22389720 + Lx9 LINE L1 7000 7091 -553 2 1631 246 188 116 0 chr3 137210083 137210152 -22389631 + RMER1C Other Other 1093 1169 -173 2 1631 528 243 129 43 chr3 137210094 137210326 -22389457 + Lx8 LINE L1 7221 7472 -1 2 1631 633 284 98 27 chr3 137211542 137211743 -22388040 + B4A SINE B4 6 222 -70 2 1631 1128 89 0 0 chr3 137211743 137211901 -22387882 + (GAAA)n Simple_repeat Simple_repeat 1 158 0 2 1631 633 284 98 27 chr3 137211901 137211923 -22387860 + B4A SINE B4 223 245 -47 2 1631 205 291 0 0 chr3 137211923 137211978 -22387805 + GA-rich Low_complexity Low_complexity 1 55 0 2 1631 288 0 0 0 chr3 137212032 137212064 -22387719 + (CA)n Simple_repeat Simple_repeat 2 33 0 2 1631 588 256 227 72 chr3 137212306 137212636 -22387147 - MLT1B LTR MaLR -6 384 4 2 1631 26 74 0 0 chr3 137213028 137213082 -22386701 + AT_rich Low_complexity Low_complexity 1 54 0 2 1631 5000 135 17 22 chr3 137214063 137214894 -22384889 + Lx2 LINE L1 5900 6726 -271 2 1631 225 226 79 16 chr3 137215659 137215722 -22384061 + L3 LINE CR1 3350 3416 -1073 2 1631 28 0 0 0 chr3 137215860 137215888 -22383895 + AT_rich Low_complexity Low_complexity 1 28 0 2 1631 301 326 11 11 chr3 137216351 137216444 -22383339 + PB1D7 SINE Alu 28 120 0 2 1631 306 342 75 72 chr3 137216570 137216891 -22382892 - L2a LINE L2 0 3426 3105 2 1631 896 351 152 29 chr3 137217243 137218265 -22381518 - L2a LINE L2 -356 3063 1917 2 1631 405 262 29 10 chr3 137220021 137220125 -22379658 + PB1D7 SINE Alu 4 109 -11 2 1631 183 80 0 0 chr3 137220542 137220567 -22379216 + (TC)n Simple_repeat Simple_repeat 1 25 0 2 1631 693 300 62 37 chr3 137220936 137221209 -22378574 + B4A SINE B4 5 284 -8 2 1631 246 312 0 0 chr3 137221220 137221300 -22378483 + (CA)n Simple_repeat Simple_repeat 2 81 0 2 1631 480 77 0 0 chr3 137221510 137221575 -22378208 + (TA)n Simple_repeat Simple_repeat 1 65 0 2 1631 324 0 0 0 chr3 137221576 137221612 -22378171 + (TG)n Simple_repeat Simple_repeat 2 37 0 2 1631 2517 166 28 8 chr3 137221623 137222092 -22377691 - RLTR31_Mur LTR ERVK -26 527 50 2 1631 367 311 37 68 chr3 137223346 137223508 -22376275 - MER20 DNA MER1_type -56 163 7 2 1631 27 62 0 0 chr3 137223581 137223629 -22376154 + AT_rich Low_complexity Low_complexity 1 48 0 2 1631 333 47 0 0 chr3 137223983 137224026 -22375757 + (CA)n Simple_repeat Simple_repeat 2 44 0 2 1631 390 91 0 0 chr3 137224781 137224836 -22374947 + (TCC)n Simple_repeat Simple_repeat 1 55 0 2 1631 561 283 68 42 chr3 137226240 137226432 -22373351 - B3A SINE B2 -1 197 1 2 1631 405 0 0 0 chr3 137227057 137227102 -22372681 + (CA)n Simple_repeat Simple_repeat 2 46 0 2 1631 782 289 71 69 chr3 137227734 137228229 -22371554 + L1MD2 LINE L1 5833 6328 -31 2 1631 305 313 40 85 chr3 137228293 137228492 -22371291 - MER46C DNA MER2_type -146 192 3 2 1631 266 0 29 0 chr3 137230255 137230289 -22369494 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 2 1631 1933 167 88 8 chr3 137230996 137231359 -22368424 + ORR1B1 LTR MaLR 3 394 0 2 1631 429 20 0 0 chr3 137232249 137232299 -22367484 + (TG)n Simple_repeat Simple_repeat 1 50 0 2 1631 194 138 51 17 chr3 137232305 137232364 -22367419 + G-rich Low_complexity Low_complexity 1 61 0 2 1632 216 188 15 30 chr3 137232551 137232617 -22367166 + T-rich Low_complexity Low_complexity 5 69 0 2 1632 31 26 0 0 chr3 137232686 137232724 -22367059 + AT_rich Low_complexity Low_complexity 1 38 0 2 1632 631 258 20 29 chr3 137233030 137233234 -22366549 - Lx7 LINE L1 -1800 5896 5695 2 1632 509 302 40 5 chr3 137233222 137233445 -22366338 - L1M2 LINE L1 -631 5669 5439 2 1632 625 260 91 17 chr3 137233679 137233855 -22365928 + B3A SINE B2 3 191 -7 2 1632 209 250 0 0 chr3 137233868 137233912 -22365871 + GA-rich Low_complexity Low_complexity 2 45 0 2 1632 304 258 30 0 chr3 137233912 137233978 -22365805 + B4 SINE B4 1 68 -224 3 1632 1921 223 16 29 chr3 137234230 137234609 -22365174 - ORR1D1 LTR MaLR 0 374 1 3 1632 597 337 80 10 chr3 137236704 137236992 -22362791 + Lx8 LINE L1 6913 7220 -253 3 1632 21 0 0 0 chr3 137237682 137237703 -22362080 + AT_rich Low_complexity Low_complexity 1 21 0 3 1632 201 114 0 43 chr3 137238152 137238198 -22361585 + (TTTG)n Simple_repeat Simple_repeat 1 44 0 3 1632 514 279 174 27 chr3 137238199 137238383 -22361400 - ID_B1 SINE B4 -7 217 7 3 1632 207 0 0 0 chr3 137238654 137238677 -22361106 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 3 1632 273 295 111 35 chr3 137239503 137239675 -22360108 + L2a LINE L2 3240 3424 -2 3 1632 234 219 11 79 chr3 137239728 137239817 -22359966 - L1_Rod LINE L1 -2919 2928 2846 3 1632 1634 189 143 14 chr3 137239820 137240190 -22359593 - MTD LTR MaLR -1 418 1 3 1632 3243 193 75 7 chr3 137240190 137240737 -22359046 + Lx9 LINE L1 6908 7476 -168 3 1632 690 0 33 0 chr3 137240737 137240827 -22358956 + (TAGA)n Simple_repeat Simple_repeat 4 96 0 3 1632 3243 193 75 7 chr3 137240827 137240962 -22358821 + Lx9 LINE L1 7477 7635 -9 3 1632 23 0 0 0 chr3 137240974 137240997 -22358786 + AT_rich Low_complexity Low_complexity 1 23 0 3 1632 3401 292 59 24 chr3 137241009 137242574 -22357209 - L1_Mur3 LINE L1 -3050 2830 1210 3 1632 608 248 97 46 chr3 137243544 137243760 -22356023 - Lx8 LINE L1 -5 7468 7242 3 1632 488 89 13 0 chr3 137243854 137243933 -22355850 + (TC)n Simple_repeat Simple_repeat 1 80 0 3 1632 305 313 0 10 chr3 137243951 137244051 -22355732 + (TG)n Simple_repeat Simple_repeat 2 100 0 3 1632 917 309 10 24 chr3 137244054 137244349 -22355434 - B4A SINE B4 0 292 2 3 1632 1830 195 57 3 chr3 137245181 137245530 -22354253 + MTC LTR MaLR 53 420 -1 3 1632 745 253 0 0 chr3 137246659 137246805 -22352978 + RSINE1 SINE B4 3 148 -17 3 1632 763 164 0 0 chr3 137247299 137247416 -22352367 - RLTR19 LTR ERVK 0 499 383 3 1632 532 235 0 56 chr3 137247416 137247441 -22352342 + RSINE1 SINE B4 2 26 -139 3 1632 1451 204 83 51 chr3 137247441 137247813 -22351970 + ORR1C2 LTR MaLR 1 384 0 3 1632 532 235 0 56 chr3 137247813 137247895 -22351888 + RSINE1 SINE B4 27 103 -62 3 1632 192 77 0 0 chr3 137247898 137247924 -22351859 + (CA)n Simple_repeat Simple_repeat 1 26 0 3 1632 546 16 0 0 chr3 137247965 137248028 -22351755 + (TAGA)n Simple_repeat Simple_repeat 4 66 0 3 1632 807 282 5 14 chr3 137248070 137248282 -22351501 + B3 SINE B2 1 210 -6 3 1632 544 284 57 19 chr3 137249034 137249192 -22350591 + B3A SINE B2 2 165 -33 3 1632 240 111 0 0 chr3 137249205 137249241 -22350542 + (CA)n Simple_repeat Simple_repeat 2 37 0 3 1632 472 18 0 0 chr3 137250185 137250241 -22349542 - MTB LTR MaLR 0 400 345 3 1632 781 22 0 0 chr3 137250235 137250327 -22349456 - MTA_Mm LTR MaLR -304 92 1 3 1632 9909 28 5 0 chr3 137250327 137251420 -22348363 - MTA_Mm-int LTR MaLR 0 1098 1 3 1632 472 18 0 0 chr3 137251420 137251476 -22348307 - MTA_Mm LTR MaLR 0 400 345 3 1632 781 22 0 0 chr3 137251470 137251562 -22348221 - MTA_Mm LTR MaLR -304 92 1 3 1632 1588 116 125 37 chr3 137251829 137252124 -22347659 - Lx3B LINE L1 -1 6972 6652 3 1632 378 260 101 57 chr3 137252284 137252443 -22347340 - B4A SINE B4 -21 271 106 3 1632 583 138 9 35 chr3 137252446 137252559 -22347224 + Lx4A LINE L1 6949 7058 0 3 1632 1046 293 78 65 chr3 137253435 137253459 -22346324 - MT2A LTR ERVL 0 533 513 3 1632 1320 157 9 35 chr3 137253459 137253690 -22346093 + URR1B DNA MER1_type 1 225 0 3 1632 1046 293 78 65 chr3 137253690 137254191 -22345592 - MT2A LTR ERVL -21 512 1 3 1632 772 260 103 77 chr3 137254412 137254724 -22345059 + RLTR14 LTR ERV1 6 325 -57 3 1632 234 0 0 0 chr3 137254869 137254895 -22344888 + (TG)n Simple_repeat Simple_repeat 2 27 0 3 1632 245 270 93 76 chr3 137255363 137255535 -22344248 - RMER15 LTR ERVL -391 184 10 3 1632 895 249 67 42 chr3 137255548 137255591 -22344192 - B4A SINE B4 0 292 252 3 1632 591 15 0 0 chr3 137255591 137255659 -22344124 + (TC)n Simple_repeat Simple_repeat 2 69 0 3 1632 895 249 67 42 chr3 137255659 137255672 -22344111 - B4A SINE B4 -41 251 240 3 1632 489 110 0 0 chr3 137255672 137255745 -22344038 + (TG)n Simple_repeat Simple_repeat 2 74 0 3 1632 895 249 67 42 chr3 137255745 137255972 -22343811 - B4A SINE B4 -53 239 1 3 1632 1532 214 54 85 chr3 137260475 137260864 -22338919 + MTE2b LTR MaLR 3 379 0 3 1632 502 234 173 49 chr3 137261021 137261183 -22338600 + B3A SINE B2 1 182 -16 3 1632 252 303 40 0 chr3 137261283 137261359 -22338424 + ID SINE ID 5 83 -141 3 1632 211 341 47 0 chr3 137261292 137261377 -22338406 + BC1_Mm scRNA scRNA 14 102 -50 3 1632 726 297 12 67 chr3 137261382 137261635 -22338148 + B4A SINE B4 5 243 -49 3 1632 705 50 3 0 chr3 137261639 137261742 -22338041 + B1_Mm SINE Alu 15 119 -1 3 1632 345 47 0 0 chr3 137261742 137261785 -22337998 + (GA)n Simple_repeat Simple_repeat 2 44 0 3 1632 1601 272 115 48 chr3 137262296 137262890 -22336893 + Lx9 LINE L1 6870 7471 -173 3 1632 420 20 0 0 chr3 137262890 137262939 -22336844 + (TG)n Simple_repeat Simple_repeat 1 49 0 3 1632 375 23 0 0 chr3 137262939 137262982 -22336801 + (GA)n Simple_repeat Simple_repeat 1 44 0 3 1632 1601 272 115 48 chr3 137262982 137263108 -22336675 + Lx9 LINE L1 7472 7638 -6 3 1632 36173 36 0 0 chr3 137263387 137268849 -22330934 + L1Md_T LINE L1 30 5589 -297 3 1632 9555 7 0 0 chr3 137268849 137269845 -22329938 + L1Md_T LINE L1 5590 6585 0 3 1632 249 33 0 0 chr3 137269851 137269881 -22329902 + (A)n Simple_repeat Simple_repeat 1 30 0 3 1632 225 299 12 38 chr3 137271294 137271374 -22328409 + RSINE1 SINE B4 5 82 -83 3 1632 477 288 155 10 chr3 137273153 137273259 -22326524 + Tigger7 DNA MER2_type 2255 2376 -115 3 1632 546 16 0 0 chr3 137273259 137273322 -22326461 + (TG)n Simple_repeat Simple_repeat 2 64 0 3 1632 477 288 155 10 chr3 137273322 137273422 -22326361 + Tigger7 DNA MER2_type 2377 2491 0 3 1632 426 270 69 42 chr3 137273746 137273889 -22325894 + ID_B1 SINE B4 96 241 -51 3 1632 437 322 60 85 chr3 137274437 137274803 -22324980 - ORR1E LTR MaLR 0 359 3 3 1632 1167 329 65 17 chr3 137276522 137276940 -22322843 + MLT2B2 LTR ERVL 18 455 -60 3 1632 548 29 14 0 chr3 137276946 137277016 -22322767 + (TAGA)n Simple_repeat Simple_repeat 2 72 0 3 1632 186 103 0 0 chr3 137277016 137277044 -22322739 + (CAGA)n Simple_repeat Simple_repeat 2 30 0 3 1632 716 269 0 6 chr3 137277053 137277210 -22322573 - B3A SINE B2 -38 160 5 3 1632 402 315 69 0 chr3 137277244 137277374 -22322409 + B1F2 SINE Alu 6 144 -5 3 1632 734 307 34 14 chr3 137277489 137277783 -22322000 - MER33 DNA MER1_type -24 300 1 3 1632 622 234 7 28 chr3 137277932 137278077 -22321706 + B4 SINE B4 127 268 -24 3 1632 248 0 31 0 chr3 137278155 137278187 -22321596 + (CA)n Simple_repeat Simple_repeat 1 33 0 3 1632 263 282 66 33 chr3 137280707 137280828 -22318955 + MLT1A1 LTR MaLR 3 127 -281 3 1632 235 306 24 0 chr3 137280883 137280968 -22318815 + CT-rich Low_complexity Low_complexity 5 91 0 3 1632 219 373 19 6 chr3 137281468 137281630 -22318153 - MIR SINE MIR -87 175 12 3 1632 22 70 0 0 chr3 137282527 137282570 -22317213 + AT_rich Low_complexity Low_complexity 1 43 0 3 1632 484 331 0 0 chr3 137282652 137282794 -22316989 - RSINE1 SINE B4 -21 144 3 3 1632 1015 266 70 23 chr3 137283048 137283348 -22316435 + ORR1E LTR MaLR 28 341 -18 3 1632 4155 21 36 0 chr3 137284184 137284660 -22315123 + MT2_Mm LTR ERVL 1 493 0 3 1632 252 0 0 0 chr3 137289802 137289830 -22309953 + (TC)n Simple_repeat Simple_repeat 2 29 0 3 1632 225 0 0 0 chr3 137289830 137289854 -22309929 + (TG)n Simple_repeat Simple_repeat 2 26 0 3 1632 273 169 0 0 chr3 137289865 137289924 -22309859 + CT-rich Low_complexity Low_complexity 2 60 0 3 1632 21 57 0 0 chr3 137291264 137291299 -22308484 + AT_rich Low_complexity Low_complexity 1 35 0 3 1632 280 153 15 92 chr3 137292039 137292104 -22307679 + RSINE1 SINE B4 8 67 -98 3 1632 230 146 51 20 chr3 137292211 137292309 -22307474 + (TG)n Simple_repeat Simple_repeat 1 101 0 3 1632 724 98 40 25 chr3 137292380 137292709 -22307074 + (TG)n Simple_repeat Simple_repeat 1 334 0 3 1632 244 311 40 26 chr3 137292893 137293045 -22306738 + L1M5 LINE L1 5285 5438 -735 3 1632 369 350 39 19 chr3 137293304 137293563 -22306220 - Charlie2b DNA MER1_type -92 2690 2427 3 1632 662 298 36 12 chr3 137294125 137294376 -22305407 - MLT1B LTR MaLR -54 336 80 3 1632 515 229 0 0 chr3 137294616 137294712 -22305071 + B3 SINE B2 15 110 -106 3 1632 571 313 136 21 chr3 137294744 137295119 -22304664 + L1MA4A LINE L1 5475 5892 -411 3 1632 380 294 27 68 chr3 137295120 137295266 -22304517 + RSINE1 SINE B4 5 144 -21 3 1632 442 200 100 39 chr3 137295279 137295409 -22304374 + RMER13A LTR ERVK 311 448 -412 3 1632 279 150 0 0 chr3 137295636 137295696 -22304087 + (CA)n Simple_repeat Simple_repeat 1 60 0 3 1632 450 96 0 0 chr3 137295695 137295768 -22304015 + (GA)n Simple_repeat Simple_repeat 2 74 0 3 1632 772 89 5 0 chr3 137296204 137296317 -22303466 - L1_Mus4 LINE L1 -146 6492 6375 3 1632 852 115 25 37 chr3 137296318 137296481 -22303302 + L1_Mus4 LINE L1 6470 6630 -6 3 1632 3403 46 0 0 chr3 137297353 137297748 -22302035 + MTA_Mm LTR MaLR 2 396 0 3 1632 9357 33 4 3 chr3 137297748 137298845 -22300938 + MTA_Mm-int LTR MaLR 1 1098 0 3 1632 3428 43 0 0 chr3 137298845 137299241 -22300542 + MTA_Mm LTR MaLR 1 396 0 3 1632 1714 191 40 6 chr3 137299436 137299788 -22299995 - ORR1C1 LTR MaLR 0 378 15 3 1632 573 225 169 23 chr3 137299802 137300090 -22299693 - MT2A LTR ERVL -181 312 1 3 1632 234 233 88 11 chr3 137301110 137301201 -22298582 - Tigger9a DNA Tigger -70 662 565 3 1632 392 266 30 38 chr3 137301290 137301423 -22298360 + RSINE1 SINE B4 5 136 -29 3 1632 222 118 0 0 chr3 137301423 137301457 -22298326 + (CAA)n Simple_repeat Simple_repeat 3 36 0 3 1632 360 0 0 0 chr3 137301467 137301507 -22298276 + (CATA)n Simple_repeat Simple_repeat 2 41 0 3 1632 273 119 0 0 chr3 137301516 137301558 -22298225 + (TGGA)n Simple_repeat Simple_repeat 2 43 0 3 1632 976 277 61 44 chr3 137301590 137301934 -22297849 - ORR1E LTR MaLR -5 354 5 3 1632 180 125 0 0 chr3 137301941 137301973 -22297810 + (CAA)n Simple_repeat Simple_repeat 3 34 0 4 1632 229 239 0 0 chr3 137302177 137302223 -22297560 - MER46C DNA MER2_type -11 327 282 4 1632 646 241 58 58 chr3 137303907 137304114 -22295669 + B3 SINE B2 5 211 -5 4 1632 1057 287 105 57 chr3 137306351 137306894 -22292889 + Lx9 LINE L1 7052 7620 -24 4 1632 30 27 0 0 chr3 137306917 137306954 -22292829 + AT_rich Low_complexity Low_complexity 1 37 0 4 1632 3814 32 5 0 chr3 137308752 137309186 -22290597 + RLTR10C LTR ERVK 1 436 0 4 1632 407 255 96 25 chr3 137309395 137309422 -22290361 + CYRA11_Mm Unknown Y-chromosome 134 174 -443 4 1632 963 146 22 0 chr3 137309422 137309600 -22290183 - URR1B DNA MER1_type 0 225 44 4 1632 1933 114 18 60 chr3 137309601 137309936 -22289847 - ORR1A4 LTR MaLR -8 321 1 4 1632 303 211 0 0 chr3 137309936 137309987 -22289796 - URR1B DNA MER1_type -174 51 1 4 1632 267 271 0 86 chr3 137310213 137310306 -22289477 - MIR SINE MIR -101 161 77 4 1632 382 335 91 5 chr3 137311291 137311501 -22288282 + MIR SINE MIR 32 259 -3 4 1632 543 268 25 25 chr3 137311731 137311881 -22287902 + B3A SINE B2 3 154 -44 4 1632 274 45 0 43 chr3 137311881 137311927 -22287856 + (CA)n Simple_repeat Simple_repeat 1 44 0 4 1632 543 282 30 284 chr3 137311927 137311955 -22287828 + B3A SINE B2 145 170 -23 4 1632 334 265 50 10 chr3 137312732 137312831 -22286952 + PB1D10 SINE Alu 1 103 -14 4 1632 543 16 0 0 chr3 137312895 137312959 -22286824 + (GA)n Simple_repeat Simple_repeat 1 64 0 4 1632 1703 175 66 44 chr3 137313261 137313625 -22286158 - ORR1D1 LTR MaLR 0 374 3 4 1632 381 286 61 143 chr3 137313629 137313825 -22285958 + MER21B LTR ERV1 2 181 -682 4 1632 627 202 247 6 chr3 137313849 137314023 -22285760 + B3 SINE B2 1 216 0 4 1632 189 0 0 0 chr3 137314287 137314308 -22285475 + (A)n Simple_repeat Simple_repeat 1 21 0 4 1632 21 0 0 0 chr3 137314385 137314406 -22285377 + AT_rich Low_complexity Low_complexity 1 21 0 4 1632 405 273 20 53 chr3 137314777 137314928 -22284855 + Charlie1a DNA MER1_type 30 175 -1280 4 1632 255 279 35 18 chr3 137315322 137315435 -22284348 + Charlie1a DNA MER1_type 742 856 -599 4 1632 235 260 128 35 chr3 137315623 137315850 -22283933 + Charlie1a DNA MER1_type 1087 1334 -121 4 1632 2807 264 128 21 chr3 137316080 137316940 -22282843 - Lx8 LINE L1 -331 7142 6191 4 1632 576 312 0 14 chr3 137317153 137317299 -22282484 + RSINE1 SINE B4 22 165 0 4 1632 3110 80 14 17 chr3 137317932 137318354 -22281429 - BGLII LTR ERVK 0 421 1 4 1632 907 191 44 105 chr3 137318901 137319129 -22280654 + B3 SINE B2 3 216 0 4 1632 447 283 6 32 chr3 137319269 137319313 -22280470 - HAL1-2a_MD LINE L1 -532 2492 2449 4 1632 2522 133 2 112 chr3 137319313 137319822 -22279961 + RLTR11B LTR ERVK 1 453 0 4 1632 447 283 6 32 chr3 137319822 137319934 -22279849 - HAL1-2a_MD LINE L1 -576 2448 2340 4 1632 444 371 31 0 chr3 137320019 137320178 -22279605 - RSINE1 SINE B4 0 165 2 4 1632 351 0 0 0 chr3 137320679 137320718 -22279065 + (TG)n Simple_repeat Simple_repeat 2 40 0 4 1632 415 283 10 10 chr3 137320948 137321048 -22278735 + RSINE1 SINE B4 1 100 -65 4 1632 933 200 12 9 chr3 137321175 137321471 -22278312 + GA-rich Low_complexity Low_complexity 1 296 0 4 1632 35992 49 0 3 chr3 137321647 137327000 -22272783 + L1Md_T LINE L1 156 5589 -297 4 1632 8629 33 0 0 chr3 137327000 137327996 -22271787 + L1Md_T LINE L1 5590 6585 0 4 1632 19261 76 41 8 chr3 137328057 137331270 -22268513 + L1Md_F3 LINE L1 417 3758 -2125 4 1632 39277 9 1 2 chr3 137331271 137337670 -22262113 + L1Md_A LINE L1 1 5586 -297 4 1632 9224 2 0 0 chr3 137337670 137338666 -22261117 + L1Md_A LINE L1 5587 6582 0 4 1632 14482 55 17 1 chr3 137338672 137340484 -22259299 + L1Md_F3 LINE L1 3746 5586 -297 4 1632 8121 44 6 4 chr3 137340485 137341480 -22258303 + L1Md_F3 LINE L1 5588 6584 0 4 1632 1458 204 226 46 chr3 137341617 137342121 -22257662 + RMER19B LTR ERVK 308 902 0 4 1632 636 107 0 0 chr3 137342237 137342340 -22257443 + (TTGG)n Simple_repeat Simple_repeat 1 103 0 4 1632 396 0 0 0 chr3 137342365 137342409 -22257374 + (GTTTG)n Simple_repeat Simple_repeat 4 47 0 4 1632 594 41 0 0 chr3 137342712 137342785 -22256998 + (TC)n Simple_repeat Simple_repeat 1 73 0 4 1632 311 337 0 0 chr3 137343619 137343717 -22256066 + BC1_Mm scRNA scRNA 1 98 -54 4 1632 542 103 11 0 chr3 137343717 137343804 -22255979 + (GGGA)n Simple_repeat Simple_repeat 2 89 0 4 1632 613 280 0 37 chr3 137344524 137344687 -22255096 + RSINE1 SINE B4 2 158 -7 4 1632 446 343 174 0 chr3 137344854 137345096 -22254687 + MER2 DNA MER2_type 4 287 -58 4 1632 583 300 14 0 chr3 137345158 137345298 -22254485 - RSINE1 SINE B4 -20 145 4 4 1632 236 301 133 19 chr3 137345613 137345718 -22254065 + PB1D10 SINE Alu 1 117 0 4 1632 276 320 20 20 chr3 137345802 137345904 -22253879 + MER5B DNA MER1_type 1 102 -76 4 1632 185 216 38 38 chr3 137346716 137346769 -22253014 + MER5B DNA MER1_type 108 160 -18 4 1632 327 294 121 20 chr3 137346781 137346930 -22252853 - L4 LINE RTE -1767 262 99 4 1632 349 229 183 14 chr3 137347239 137347446 -22252337 + L1MA4 LINE L1 4039 4280 -1600 4 1632 992 298 35 30 chr3 137347714 137348143 -22251640 + L1MA4 LINE L1 4503 4933 -1210 4 1632 373 242 10 10 chr3 137348126 137348195 -22251588 + L1_Rod LINE L1 5149 5218 -629 4 1632 874 155 7 20 chr3 137348195 137348346 -22251437 + B1_Mur4 SINE Alu 1 149 -1 4 1632 373 242 10 10 chr3 137348346 137348376 -22251407 + L1_Rod LINE L1 5219 5248 -599 4 1632 519 95 0 0 chr3 137348382 137348456 -22251327 + (GGA)n Simple_repeat Simple_repeat 3 76 0 4 1632 243 262 25 12 chr3 137348527 137348608 -22251175 + ID4_ SINE ID 2 83 0 4 1632 824 37 0 0 chr3 137348660 137348769 -22251014 + B1_Mm SINE Alu 1 109 -38 4 1632 315 0 0 0 chr3 137348777 137348812 -22250971 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 4 1632 639 308 122 13 chr3 137348815 137349273 -22250510 + L1MA4 LINE L1 5390 5897 -403 4 1632 3108 65 48 0 chr3 137349659 137350056 -22249727 - L1_Mus1 LINE L1 0 6567 6152 4 1632 542 15 15 0 chr3 137350725 137350792 -22248991 + (TA)n Simple_repeat Simple_repeat 1 68 0 4 1632 428 310 54 8 chr3 137350842 137350972 -22248811 + B3A SINE B2 2 137 -61 4 1632 1104 102 14 0 chr3 137351054 137351201 -22248582 + Lx7 LINE L1 6688 6836 -860 4 1632 790 135 0 0 chr3 137351266 137351392 -22248391 - Lx2A1 LINE L1 -3 7005 6880 4 1632 323 23 0 22 chr3 137351583 137351628 -22248155 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 4 1632 1053 67 0 0 chr3 137351632 137351766 -22248017 - B1_Mm SINE Alu -13 134 1 4 1632 185 339 21 71 chr3 137351954 137352094 -22247689 - L2 LINE L2 -2236 1183 1051 4 1632 22 0 0 0 chr3 137352492 137352514 -22247269 + AT_rich Low_complexity Low_complexity 1 22 0 4 1632 336 194 12 45 chr3 137352517 137352614 -22247169 + B4A SINE B4 4 96 -69 4 1632 2544 176 103 7 chr3 137352614 137353310 -22246473 + Lx7 LINE L1 5514 6295 -1401 4 1632 1807 211 32 3 chr3 137353310 137353685 -22246098 - ORR1B1 LTR MaLR -8 386 1 4 1632 285 333 58 8 chr3 137353761 137353882 -22245901 - ORR1E LTR MaLR -210 149 23 4 1632 809 318 28 7 chr3 137354237 137354519 -22245264 + B4 SINE B4 1 288 -4 4 1632 216 67 0 0 chr3 137354529 137354559 -22245224 + (CA)n Simple_repeat Simple_repeat 1 30 0 4 1632 1650 155 47 11 chr3 137355594 137355930 -22243853 + ORR1A3 LTR MaLR 1 382 -2 4 1632 201 143 48 0 chr3 137355930 137355972 -22243811 + (TTAAA)n Simple_repeat Simple_repeat 4 47 0 4 1632 228 253 0 96 chr3 137356438 137356521 -22243262 + L1M6 LINE L1 906 980 -5516 4 1632 398 315 109 33 chr3 137357356 137357750 -22242033 + MuRRS-int LTR ERV1 1811 2234 -2456 4 1632 803 137 179 22 chr3 137357780 137357959 -22241824 + Lx LINE L1 6448 6654 0 4 1632 233 336 7 0 chr3 137358506 137358602 -22241181 + PB1D10 SINE Alu 2 98 -51 4 1632 252 0 0 0 chr3 137358607 137358635 -22241148 + (CAAT)n Simple_repeat Simple_repeat 1 28 0 4 1632 684 0 0 0 chr3 137358762 137358838 -22240945 + (GAAA)n Simple_repeat Simple_repeat 2 77 0 4 1632 369 123 0 0 chr3 137359164 137359229 -22240554 + (TG)n Simple_repeat Simple_repeat 1 65 0 4 1632 248 333 88 18 chr3 137359233 137359346 -22240437 + L1MD3 LINE L1 6665 6785 -1210 4 1632 236 259 93 12 chr3 137359526 137359612 -22240171 + PB1D10 SINE Alu 17 109 -8 4 1632 235 222 0 0 chr3 137359977 137360022 -22239761 + RMER1C Other Other 601 645 -697 4 1632 2000 226 134 20 chr3 137360222 137360765 -22239018 + RMER1C Other Other 735 1339 -3 4 1632 1199 48 0 13 chr3 137360774 137360923 -22238860 + B1_Mm SINE Alu 1 147 0 4 1632 1407 161 149 55 chr3 137361135 137361463 -22238320 + ORR1B2 LTR MaLR 1 359 -8 4 1632 778 97 19 32 chr3 137361585 137361736 -22238047 + ORR1A2 LTR MaLR 82 242 -87 4 1632 252 351 0 0 chr3 137361932 137362009 -22237774 + MER67D LTR ERV1 236 312 -202 4 1632 338 276 0 71 chr3 137362017 137362130 -22237653 - MTE2b LTR MaLR -217 162 58 4 1632 257 122 78 9 chr3 137362338 137362454 -22237329 + (TA)n Simple_repeat Simple_repeat 1 124 0 4 1632 23 54 0 0 chr3 137362455 137362492 -22237291 + AT_rich Low_complexity Low_complexity 1 37 0 4 1632 222 37 0 0 chr3 137362884 137362911 -22236872 + (A)n Simple_repeat Simple_repeat 1 27 0 4 1632 550 300 47 56 chr3 137362953 137363101 -22236682 + L1MCc LINE L1 1129 1275 -5148 4 25 1039 281 86 30 chr3 137363101 137363498 -22236285 + MTD LTR MaLR 1 419 0 4 1633 550 300 47 56 chr3 137363498 137363670 -22236113 + L1MCc LINE L1 1276 1446 -4977 4 1633 585 296 5 53 chr3 137363793 137364000 -22235783 - B3A SINE B2 0 198 2 4 1633 351 297 92 26 chr3 137364361 137364634 -22235149 + L1MCc LINE L1 2043 2333 -4704 4 1633 240 100 0 0 chr3 137364740 137364780 -22235003 + (T)n Simple_repeat Simple_repeat 1 40 0 4 1633 1226 41 7 0 chr3 137364780 137364926 -22234857 - B1_Mus2 SINE Alu 0 147 1 4 1633 1207 138 151 62 chr3 137365000 137365350 -22234433 + RMER17C LTR ERVK 1 386 -24 4 1633 438 20 0 0 chr3 137365350 137365401 -22234382 + (TTTC)n Simple_repeat Simple_repeat 3 53 0 4 1633 1207 138 151 62 chr3 137365401 137365420 -22234363 + RMER17C LTR ERVK 387 403 -7 4 1633 6968 61 10 5 chr3 137365420 137366295 -22233488 - L1Md_F2 LINE L1 -19 6563 5684 4 1633 4003 45 41 0 chr3 137366292 137366778 -22233005 + L1Md_F2 LINE L1 5204 5709 -174 4 1633 614 269 90 25 chr3 137367087 137367432 -22232351 + MLT2B4 LTR ERVL 1 359 -55 4 1633 919 248 150 12 chr3 137367594 137367898 -22231885 + MTE2b LTR MaLR 1 350 -29 4 1633 212 0 36 0 chr3 137367898 137367926 -22231857 + (TTTG)n Simple_repeat Simple_repeat 3 31 0 4 1633 919 248 150 12 chr3 137367926 137367948 -22231835 + MTE2b LTR MaLR 351 372 -7 4 1633 1749 270 48 16 chr3 137367957 137368514 -22231269 + MTE2b-int LTR MaLR 2 576 -1004 4 1633 565 256 122 20 chr3 137368537 137368792 -22230991 - RLTR15 LTR ERVK -78 281 1 4 1633 406 311 103 24 chr3 137368792 137368957 -22230826 + MTE2b-int LTR MaLR 567 744 -836 4 1633 576 172 0 0 chr3 137369017 137369162 -22230621 + GA-rich Low_complexity Low_complexity 1 145 0 5 1633 2269 273 61 32 chr3 137369701 137370243 -22229540 + MTE2b-int LTR MaLR 787 1359 -221 4 1633 999 239 10 0 chr3 137370243 137370452 -22229331 - B3 SINE B2 -5 211 1 5 1633 2269 273 61 32 chr3 137370452 137370657 -22229126 + MTE2b-int LTR MaLR 1360 1556 -24 4 1633 614 244 54 44 chr3 137370657 137371141 -22228642 + RMER17C LTR ERVK 1 376 -34 5 1633 246 218 18 0 chr3 137371215 137371270 -22228513 + MTEa LTR MaLR 44 99 -280 5 1633 874 316 61 0 chr3 137371274 137371568 -22228215 + MTEa LTR MaLR 64 375 -4 5 1633 480 18 0 0 chr3 137372049 137372106 -22227677 + (TG)n Simple_repeat Simple_repeat 2 58 0 5 1633 216 0 0 0 chr3 137372600 137372624 -22227159 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 5 1633 1590 231 138 63 chr3 137373472 137374044 -22225739 + Lx7 LINE L1 5961 6575 -1121 5 1633 561 194 0 0 chr3 137374047 137374222 -22225561 + (TG)n Simple_repeat Simple_repeat 2 176 0 5 1633 746 152 6 0 chr3 137374247 137374424 -22225359 + (TG)n Simple_repeat Simple_repeat 1 178 0 5 1633 692 316 17 24 chr3 137374424 137374716 -22225067 - B4A SINE B4 0 292 3 5 1633 1840 138 10 15 chr3 137374811 137375170 -22224613 - ORR1A4 LTR MaLR 0 394 29 5 1633 471 218 58 164 chr3 137375306 137375618 -22224165 - RMER17C LTR ERVK -131 279 1 5 1633 203 189 0 0 chr3 137375642 137375679 -22224104 + T-rich Low_complexity Low_complexity 1 37 0 5 1633 21 57 0 0 chr3 137376693 137376728 -22223055 + AT_rich Low_complexity Low_complexity 1 35 0 5 1633 620 253 123 5 chr3 137376813 137377000 -22222783 + B3 SINE B2 2 210 -6 5 1633 462 255 39 22 chr3 137377634 137377792 -22221991 - MLT1A LTR MaLR -17 488 261 5 1633 775 69 0 52 chr3 137378116 137378269 -22221514 + (TTCTC)n Simple_repeat Simple_repeat 5 149 0 5 1633 540 45 0 0 chr3 137378282 137378349 -22221434 + (TG)n Simple_repeat Simple_repeat 2 68 0 5 1633 266 247 21 21 chr3 137378441 137378536 -22221247 + RMER10A LTR ERVL 318 412 -30 5 1633 961 9 0 0 chr3 137378621 137378726 -22221057 + U6 snRNA snRNA 1 105 -2 5 1633 1335 284 41 2 chr3 137378970 137379386 -22220397 - MER31A LTR ERV1 -1 484 53 5 1633 226 345 97 41 chr3 137380304 137380449 -22219334 - MLT1A LTR MaLR -55 310 158 5 1633 30 59 0 0 chr3 137380451 137380502 -22219281 + AT_rich Low_complexity Low_complexity 1 51 0 5 1633 529 246 49 14 chr3 137380732 137380876 -22218907 + B1F1 SINE Alu 1 149 0 5 1633 247 288 0 15 chr3 137381124 137381191 -22218592 + ID4_ SINE ID 2 67 -16 5 1633 1458 181 115 26 chr3 137381203 137381550 -22218233 - ORR1C1 LTR MaLR 0 378 1 5 1633 567 246 30 15 chr3 137381550 137381682 -22218101 + ID_B1 SINE B4 73 206 -18 5 1633 851 103 7 0 chr3 137381682 137381837 -22217946 + (TG)n Simple_repeat Simple_repeat 1 156 0 5 1633 207 261 0 80 chr3 137381847 137381922 -22217861 + MIRc SINE MIR 121 189 -79 5 1633 24 77 0 0 chr3 137382137 137382189 -22217594 + AT_rich Low_complexity Low_complexity 1 52 0 5 1633 22165 22 0 1 chr3 137382205 137385417 -22214366 - L1Md_T LINE L1 0 6582 3372 5 1633 834 106 0 0 chr3 137386047 137386170 -22213613 + (TC)n Simple_repeat Simple_repeat 2 124 0 5 1633 594 41 0 0 chr3 137386306 137386379 -22213404 + (TCC)n Simple_repeat Simple_repeat 1 73 0 5 1633 465 103 0 0 chr3 137386441 137386509 -22213274 + (TCC)n Simple_repeat Simple_repeat 3 70 0 5 1633 12720 144 60 12 chr3 137386559 137388703 -22211080 - Lx5 LINE L1 0 7050 4780 5 1633 477 0 0 0 chr3 137388703 137388756 -22211027 + (CTATT)n Simple_repeat Simple_repeat 3 55 0 5 1633 12720 115 30 12 chr3 137388756 137389645 -22210138 - Lx5 LINE L1 -1098 4779 3869 5 1633 250 81 0 0 chr3 137389643 137389680 -22210103 - Lx5 LINE L1 -3045 2835 2799 5 1633 210 292 97 0 chr3 137389864 137389936 -22209847 - ID4_ SINE ID -3 80 2 5 1633 708 286 50 4 chr3 137390054 137390293 -22209490 + RLTR16 LTR ERVK 1 250 -255 5 1633 221 333 0 0 chr3 137391458 137391512 -22208271 - ID SINE ID -144 80 27 5 1633 384 240 81 16 chr3 137392126 137392249 -22207534 + RSINE1 SINE B4 3 133 -32 5 1633 478 291 208 30 chr3 137392664 137393358 -22206425 + L1M2 LINE L1 4295 5111 -1032 5 1633 907 260 49 16 chr3 137393386 137393632 -22206151 + MTD LTR MaLR 7 260 -159 5 1633 807 216 28 6 chr3 137393663 137393845 -22205938 + MTD LTR MaLR 234 419 0 5 1633 631 308 130 0 chr3 137393845 137394167 -22205616 + L1_Mur3 LINE L1 5096 5459 -421 5 1633 689 268 138 11 chr3 137394162 137394423 -22205360 + Lx8 LINE L1 6887 7180 -293 5 1633 384 22 0 0 chr3 137394572 137394617 -22205166 + (CA)n Simple_repeat Simple_repeat 2 46 0 5 1633 1591 226 48 8 chr3 137394630 137395067 -22204716 + RLTR11A2 LTR ERVK 65 527 0 5 1633 341 300 91 0 chr3 137395531 137395641 -22204142 - PB1 SINE Alu -2 125 6 5 1633 487 248 78 0 chr3 137395892 137396021 -22203762 + B1_Mur1 SINE Alu 2 140 -9 5 1633 374 250 118 59 chr3 137396532 137396668 -22203115 + B1F1 SINE Alu 5 148 -1 5 1633 5978 204 132 19 chr3 137397996 137398107 -22201676 - Lx9 LINE L1 -1 7643 7477 5 1633 270 0 0 0 chr3 137398107 137398137 -22201646 + (TG)n Simple_repeat Simple_repeat 2 31 0 5 1633 5978 204 132 19 chr3 137398137 137399428 -22200355 - Lx9 LINE L1 -168 7476 6083 5 1633 180 0 0 0 chr3 137400177 137400197 -22199586 + (A)n Simple_repeat Simple_repeat 1 20 0 5 1633 582 199 32 124 chr3 137401190 137401408 -22198375 - B3A SINE B2 0 198 1 5 1633 442 312 20 97 chr3 137401437 137401632 -22198151 - B3A SINE B2 -16 182 3 5 1633 4256 104 10 0 chr3 137401976 137402553 -22197230 + MT2B2 LTR ERVL 2 584 0 5 1633 486 310 84 11 chr3 137402806 137403055 -22196728 - MTEb LTR MaLR -2 377 86 5 1633 308 264 14 0 chr3 137403094 137403166 -22196617 + RSINE1 SINE B4 43 115 -50 5 1633 445 282 15 8 chr3 137403626 137403758 -22196025 - B1F1 SINE Alu -16 133 1 5 1633 36 40 0 0 chr3 137404327 137404377 -22195406 + AT_rich Low_complexity Low_complexity 1 50 0 5 1633 437 301 7 22 chr3 137404515 137404651 -22195132 + ID_B1 SINE B4 84 217 -7 5 1633 21 0 0 0 chr3 137405063 137405084 -22194699 + AT_rich Low_complexity Low_complexity 1 21 0 5 1633 241 333 12 0 chr3 137406258 137406339 -22193444 - ID4_ SINE ID 0 83 2 5 1633 354 295 57 8 chr3 137406347 137406470 -22193313 - B1F1 SINE Alu -6 143 15 5 1633 579 288 8 7 chr3 137406596 137406749 -22193034 - ID_B1 SINE B4 -73 219 66 5 1633 310 311 33 0 chr3 137406826 137406916 -22192867 + PB1D7 SINE Alu 13 105 -15 5 1633 212 59 0 29 chr3 137406938 137406973 -22192810 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 5 1633 21 0 0 0 chr3 137407388 137407409 -22192374 + AT_rich Low_complexity Low_complexity 1 21 0 5 1633 735 278 71 15 chr3 137407469 137407736 -22192047 + B4A SINE B4 2 283 -9 5 1633 333 0 0 0 chr3 137407874 137407911 -22191872 + (TG)n Simple_repeat Simple_repeat 1 37 0 5 1633 616 205 0 73 chr3 137408330 137408467 -22191316 + ID_B1 SINE B4 85 211 -13 5 1633 1184 97 8 0 chr3 137408473 137408848 -22190935 + (TAGA)n Simple_repeat Simple_repeat 1 378 0 5 1633 22 0 0 0 chr3 137409216 137409238 -22190545 + AT_rich Low_complexity Low_complexity 1 22 0 5 1633 644 254 74 5 chr3 137409528 137409730 -22190053 + ID_B1 SINE B4 3 218 -6 5 1633 396 0 0 0 chr3 137410147 137410191 -22189592 + (CA)n Simple_repeat Simple_repeat 2 45 0 5 1633 2371 60 3 0 chr3 137410198 137410516 -22189267 + ORR1A2 LTR MaLR 1 319 -8 5 1633 1976 26 0 9 chr3 137410823 137411048 -22188735 - L1Md_T LINE L1 -432 6150 5927 5 1633 3430 35 2 0 chr3 137411048 137411450 -22188333 + L1Md_A LINE L1 6180 6582 0 5 1633 206 289 33 78 chr3 137412191 137412281 -22187502 + MIRb SINE MIR 3 88 -180 5 1633 291 242 88 0 chr3 137412359 137412450 -22187333 + ID_B1 SINE B4 78 176 -48 5 1633 951 156 91 11 chr3 137413245 137413420 -22186363 - B2_Mm2 SINE B2 -6 189 1 5 1633 1077 225 85 103 chr3 137413424 137413458 -22186325 - MTEa LTR MaLR -8 371 324 5 1633 2086 123 38 6 chr3 137413458 137413777 -22186006 + ORR1A4 LTR MaLR 1 329 0 5 1633 1077 225 85 103 chr3 137413777 137413943 -22185840 - MTEa LTR MaLR -56 323 161 5 1633 600 263 76 15 chr3 137413943 137414140 -22185643 - B3 SINE B2 -7 209 1 5 1633 270 0 0 0 chr3 137414141 137414171 -22185612 + (CA)n Simple_repeat Simple_repeat 2 31 0 5 1633 1077 225 85 103 chr3 137414171 137414344 -22185439 - MTEa LTR MaLR -219 160 3 5 1633 180 0 0 0 chr3 137415270 137415290 -22184493 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 5 1633 780 81 0 0 chr3 137415320 137415431 -22184352 - B1_Mus1 SINE Alu 0 148 38 5 1633 729 199 0 0 chr3 137416794 137417026 -22182757 + (CA)n Simple_repeat Simple_repeat 1 232 0 5 1633 227 235 132 0 chr3 137417064 137417132 -22182651 + MER57D LTR ERV1 1 77 -334 5 1633 306 269 9 18 chr3 137417165 137417275 -22182508 - PB1D10 SINE Alu -2 115 7 5 1633 276 252 103 37 chr3 137417378 137417514 -22182269 - MTD LTR MaLR -15 404 260 5 1633 421 259 46 0 chr3 137417782 137417890 -22181893 - RMER20B LTR ERVK -514 113 1 5 1633 666 182 0 43 chr3 137417975 137418113 -22181670 - B1_Mur1 SINE Alu -1 148 17 5 1633 816 11 0 0 chr3 137419015 137419108 -22180675 + (TTC)n Simple_repeat Simple_repeat 1 93 0 5 1633 249 270 16 0 chr3 137419185 137419248 -22180535 - MLT1J LTR MaLR -396 116 53 5 1633 1675 162 51 87 chr3 137419592 137419984 -22179799 + RLTR41 LTR ERV1 62 439 -7 5 1633 329 299 0 0 chr3 137419984 137420061 -22179722 - ID4_ SINE ID -3 80 4 5 1633 280 321 51 22 chr3 137420073 137420210 -22179573 - B1F1 SINE Alu -7 142 2 5 1633 1302 146 1 8 chr3 137421806 137422037 -22177746 - MTC LTR MaLR 0 421 181 5 1633 405 138 0 0 chr3 137422038 137422118 -22177665 + (CCTG)n Simple_repeat Simple_repeat 1 80 0 5 1633 774 150 7 67 chr3 137422127 137422138 -22177645 - B1_Mus1 SINE Alu -2 146 137 5 1633 204 40 0 0 chr3 137422138 137422163 -22177620 + (TTTG)n Simple_repeat Simple_repeat 3 27 0 5 1633 774 150 7 67 chr3 137422163 137422301 -22177482 - B1_Mus1 SINE Alu -12 136 6 5 1633 1149 148 9 32 chr3 137422305 137422521 -22177262 - MTC LTR MaLR -210 211 1 5 1633 466 257 0 9 chr3 137422753 137422863 -22176920 + RSINE1 SINE B4 3 111 -54 5 1633 284 219 78 36 chr3 137423022 137423136 -22176647 - B1F1 SINE Alu -3 114 6 5 1633 216 207 34 17 chr3 137423088 137423147 -22176636 - B4 SINE B4 -152 140 81 6 1633 523 264 7 60 chr3 137423143 137423292 -22176491 - ID_B1 SINE B4 -7 217 77 6 1633 502 282 92 0 chr3 137424337 137424479 -22175304 - RSINE1 SINE B4 -8 157 3 6 1633 506 254 88 15 chr3 137424484 137424620 -22175163 - B1F2 SINE Alu -3 146 1 6 1633 330 115 0 0 chr3 137424787 137424848 -22174935 + (CA)n Simple_repeat Simple_repeat 2 62 0 6 1633 808 201 113 11 chr3 137424894 137424940 -22174843 - B3 SINE B2 -7 209 163 6 1633 306 0 0 0 chr3 137424940 137424974 -22174809 + (TG)n Simple_repeat Simple_repeat 2 35 0 6 1633 808 201 113 11 chr3 137424974 137425113 -22174670 - B3 SINE B2 -54 162 5 6 1633 1273 97 11 6 chr3 137426629 137426806 -22172977 + B2_Mm1t SINE B2 2 179 -14 6 1633 432 69 267 14 chr3 137426839 137426955 -22172828 + B2_Mm2 SINE B2 46 195 0 6 1633 760 317 104 54 chr3 137427213 137427847 -22171936 - Charlie1a DNA MER1_type -401 1054 389 6 1633 817 253 137 77 chr3 137427877 137427929 -22171854 - MTD LTR MaLR -22 397 325 6 1633 1405 76 0 21 chr3 137427929 137428118 -22171665 + B2_Mm2 SINE B2 2 186 -9 6 1633 817 232 171 68 chr3 137428118 137428392 -22171391 - MTD LTR MaLR -57 362 56 6 1633 403 346 70 4 chr3 137428408 137428637 -22171146 - Charlie1a DNA MER1_type -1117 338 95 6 1633 1191 212 156 6 chr3 137428637 137428965 -22170818 + MTEb LTR MaLR 3 379 0 6 1633 229 228 112 12 chr3 137429137 137429217 -22170566 - MLT1H LTR MaLR -1 548 461 6 1633 246 62 0 0 chr3 137429327 137429359 -22170424 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 6 1633 317 146 0 18 chr3 137429384 137429440 -22170343 - B2_Mm2 SINE B2 -94 101 47 6 1633 1210 113 11 6 chr3 137429486 137429664 -22170119 - B2_Mm1t SINE B2 -13 180 2 6 1633 1226 240 100 61 chr3 137429664 137429905 -22169878 + RMER4B LTR ERVK 35 266 -319 6 1633 351 121 0 0 chr3 137429905 137429963 -22169820 + (ATG)n Simple_repeat Simple_repeat 2 59 0 6 1633 1226 241 92 40 chr3 137429963 137430190 -22169593 + RMER4B LTR ERVK 267 561 -24 6 1633 335 299 10 0 chr3 137430552 137430649 -22169134 - MTE2b LTR MaLR -281 98 1 6 1633 514 337 62 38 chr3 137430777 137431067 -22168716 - MLT1A0 LTR MaLR -9 356 60 6 1633 553 294 29 0 chr3 137431277 137431413 -22168370 + ID_B1 SINE B4 84 223 -1 6 1633 557 300 136 35 chr3 137431425 137431909 -22167874 + MT2A LTR ERVL 1 533 0 6 1633 418 264 60 60 chr3 137432280 137432429 -22167354 + B4 SINE B4 56 204 -88 6 1633 805 132 0 0 chr3 137432322 137432451 -22167332 + B1_Mus1 SINE Alu 8 136 -12 6 1633 183 42 0 0 chr3 137432453 137432477 -22167306 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 6 1633 349 191 0 0 chr3 137433001 137433064 -22166719 + B1F1 SINE Alu 80 142 -7 6 1633 402 321 126 39 chr3 137433309 137433643 -22166140 + LTR33C LTR ERVL 118 480 -149 6 1633 1374 67 5 0 chr3 137433646 137433840 -22165943 + MTB_Mm LTR MaLR 1 195 -212 6 1633 748 187 15 0 chr3 137433840 137433974 -22165809 + L1VL2 LINE L1 270 405 -5930 6 1633 13725 67 11 13 chr3 137433949 137435245 -22164538 + MusHAL1 LINE L1 158 1447 -1265 6 1633 1739 16 0 0 chr3 137435245 137435437 -22164346 - B2_Mm1a SINE B2 0 193 2 6 1633 13725 67 11 13 chr3 137435437 137436073 -22163710 + MusHAL1 LINE L1 1448 2086 -626 6 1633 24 0 0 0 chr3 137436224 137436248 -22163535 + AT_rich Low_complexity Low_complexity 1 24 0 6 1633 582 289 118 0 chr3 137436561 137436713 -22163070 - B3 SINE B2 -46 170 1 6 1633 4853 87 38 28 chr3 137436734 137437441 -22162342 - Lx3A LINE L1 -4 6977 6264 6 1633 217 167 0 40 chr3 137437441 137437482 -22162301 + B4A SINE B4 84 123 -169 6 1633 302 114 0 0 chr3 137437443 137437487 -22162296 + B1_Mur4 SINE Alu 1 44 -106 6 1633 228 86 0 0 chr3 137437500 137437535 -22162248 + (TAAAA)n Simple_repeat Simple_repeat 2 36 0 6 1633 413 277 0 74 chr3 137437602 137437723 -22162060 + PB1D9 SINE Alu 1 112 -8 6 1633 1196 62 0 0 chr3 137437736 137437882 -22161901 + B1_Mm SINE Alu 2 147 0 6 1633 183 129 0 0 chr3 137437882 137437913 -22161870 + (A)n Simple_repeat Simple_repeat 1 31 0 6 1633 202 97 32 0 chr3 137437914 137437945 -22161838 + (CA)n Simple_repeat Simple_repeat 2 33 0 6 1633 181 224 67 56 chr3 137437956 137438046 -22161737 + L2a LINE L2 3191 3281 -145 6 1633 216 314 34 50 chr3 137438161 137438325 -22161458 - MIR SINE MIR -93 175 7 6 1633 242 268 14 14 chr3 137438421 137438493 -22161290 + ID4_ SINE ID 2 73 -10 6 1633 860 236 16 0 chr3 137439482 137439664 -22160119 + B3 SINE B2 5 189 -27 6 1633 793 149 13 0 chr3 137440277 137440294 -22159489 + A-rich Low_complexity Low_complexity 4 20 0 6 1633 961 63 47 0 chr3 137440294 137440421 -22159362 + B1_Mm SINE Alu 1 133 -14 6 1633 793 149 13 0 chr3 137440421 137440557 -22159226 + A-rich Low_complexity Low_complexity 21 158 0 6 1633 492 286 58 43 chr3 137441379 137441587 -22158196 - ID_B1 SINE B4 -9 215 5 6 1633 600 255 58 103 chr3 137441936 137442159 -22157624 + ID_B1 SINE B4 3 215 -9 6 1633 463 236 75 0 chr3 137442220 137442326 -22157457 + RSINE1 SINE B4 14 127 -38 6 1633 828 221 60 0 chr3 137442335 137442534 -22157249 - RLTR42 LTR ERVK 0 239 29 6 1633 225 132 0 0 chr3 137442547 137442585 -22157198 + (CA)n Simple_repeat Simple_repeat 1 38 0 6 1633 214 329 24 0 chr3 137443284 137443369 -22156414 - PB1D10 SINE Alu -30 87 1 6 1633 1093 81 121 0 chr3 137443676 137443849 -22155934 + B2_Mm2 SINE B2 2 195 0 6 1633 718 200 100 0 chr3 137444320 137444480 -22155303 - MTE2a LTR MaLR 0 379 204 6 1633 672 190 56 42 chr3 137444483 137444626 -22155157 + B1_Mur2 SINE Alu 5 149 0 6 1633 499 220 69 21 chr3 137444669 137444813 -22154970 + B3A SINE B2 1 151 -47 6 1633 366 129 0 0 chr3 137444817 137444879 -22154904 + (CA)n Simple_repeat Simple_repeat 1 62 0 6 1633 329 267 111 151 chr3 137444887 137445112 -22154671 - MTE2a LTR MaLR -163 216 1 6 1633 636 296 31 186 chr3 137445320 137445562 -22154221 + MTEa LTR MaLR 2 198 -181 6 1633 690 75 0 0 chr3 137445562 137445655 -22154128 + (TTC)n Simple_repeat Simple_repeat 1 93 0 6 1633 636 296 31 186 chr3 137445655 137445857 -22153926 + MTEa LTR MaLR 199 377 -2 6 1633 222 197 98 0 chr3 137445991 137446052 -22153731 + ID4 SINE ID 1 67 -16 6 1633 924 216 77 0 chr3 137446485 137446679 -22153104 + B3 SINE B2 2 210 -6 6 1633 427 343 67 34 chr3 137446985 137447193 -22152590 + LTR31 LTR ERV1 113 327 -292 6 1633 189 0 0 0 chr3 137447306 137447327 -22152456 + (CCCTAA)n Simple_repeat Simple_repeat 2 22 0 6 1633 333 0 0 0 chr3 137447663 137447700 -22152083 + (CA)n Simple_repeat Simple_repeat 1 37 0 6 1633 1633 260 55 42 chr3 137448306 137448928 -22150855 - L1MA6 LINE L1 -283 6017 5388 6 1633 305 206 229 70 chr3 137448935 137448958 -22150825 - B2_Mm1a SINE B2 -10 183 161 6 1633 262 0 53 0 chr3 137448958 137448996 -22150787 + (TG)n Simple_repeat Simple_repeat 1 40 0 6 1633 452 219 226 38 chr3 137448996 137449129 -22150654 - B3A SINE B2 -39 159 2 6 1633 219 225 99 22 chr3 137449168 137449259 -22150524 + B3A SINE B2 2 99 -99 6 1633 267 276 228 15 chr3 137449207 137449343 -22150440 + B4A SINE B4 106 270 -22 6 1633 234 0 0 0 chr3 137449349 137449375 -22150408 + (TG)n Simple_repeat Simple_repeat 2 27 0 6 1633 245 371 0 0 chr3 137449440 137449510 -22150273 - ID SINE ID -144 80 11 6 1633 357 211 0 76 chr3 137449573 137449691 -22150092 - L1MA6 LINE L1 -1626 4517 4409 6 1633 671 249 149 46 chr3 137449934 137450195 -22149588 + B4A SINE B4 2 289 -3 6 1633 297 0 0 0 chr3 137450218 137450251 -22149532 + (CA)n Simple_repeat Simple_repeat 2 34 0 6 1633 374 236 21 11 chr3 137451045 137451139 -22148644 + ID_B1 SINE B4 99 193 -31 6 1633 730 212 65 26 chr3 137451368 137451523 -22148260 - RSINE1 SINE B4 -4 161 1 6 1633 318 294 29 10 chr3 137451601 137451704 -22148079 - RSINE1 SINE B4 -59 106 2 6 1633 189 169 33 17 chr3 137451744 137451804 -22147979 + (TATATG)n Simple_repeat Simple_repeat 6 66 0 6 1633 344 307 83 45 chr3 137452775 137452916 -22146867 + RSINE1 SINE B4 3 151 -14 6 1633 1089 126 0 0 chr3 137452916 137453091 -22146692 + (CA)n Simple_repeat Simple_repeat 1 175 0 6 1633 344 307 83 45 chr3 137453091 137453106 -22146677 + RSINE1 SINE B4 152 165 0 6 1633 525 167 0 0 chr3 137453109 137453211 -22146572 + (CA)n Simple_repeat Simple_repeat 2 103 0 6 1633 310 304 111 33 chr3 137453341 137453521 -22146262 + B4 SINE B4 8 201 -91 6 1633 327 247 47 0 chr3 137453892 137453977 -22145806 - PB1D10 SINE Alu -27 90 2 6 1633 556 280 85 6 chr3 137454403 137454579 -22145204 + ID_B1 SINE B4 35 224 0 6 1633 916 299 11 14 chr3 137455335 137455620 -22144163 - B4A SINE B4 -8 284 1 6 1633 903 67 0 0 chr3 137455857 137455976 -22143807 + (TTTC)n Simple_repeat Simple_repeat 2 120 0 6 1633 1107 65 0 0 chr3 137455976 137456115 -22143668 - B1_Mus1 SINE Alu -9 139 1 6 1633 400 239 128 0 chr3 137456270 137456379 -22143404 - ID_B1 SINE B4 -100 124 2 6 1633 333 0 0 0 chr3 137456412 137456449 -22143334 + (TG)n Simple_repeat Simple_repeat 1 37 0 6 1633 393 317 55 21 chr3 137456449 137456589 -22143194 - RSINE1 SINE B4 -12 153 9 6 1633 394 296 0 0 chr3 137456640 137456728 -22143055 + PB1D7 SINE Alu 23 110 -10 6 1633 207 80 19 57 chr3 137457181 137457234 -22142549 + T-rich Low_complexity Low_complexity 2 52 0 6 1633 26 0 0 0 chr3 137457982 137458008 -22141775 + AT_rich Low_complexity Low_complexity 1 26 0 6 1633 569 275 0 78 chr3 137458073 137458227 -22141556 + RSINE1 SINE B4 23 164 -1 6 1633 25 0 0 0 chr3 137458236 137458261 -22141522 + AT_rich Low_complexity Low_complexity 1 25 0 6 1633 341 286 0 30 chr3 137458393 137458494 -22141289 + ID_B1 SINE B4 90 187 -37 6 1633 659 223 30 60 chr3 137458492 137458692 -22141091 + B3 SINE B2 11 204 -12 6 1633 250 289 0 50 chr3 137459654 137459734 -22140049 + ID4_ SINE ID 8 83 0 7 1633 807 216 112 34 chr3 137460311 137460517 -22139266 + ID_B1 SINE B4 3 224 0 7 1633 300 290 0 50 chr3 137460662 137460779 -22139004 + B1F1 SINE Alu 38 147 -2 7 1633 207 0 0 0 chr3 137460779 137460802 -22138981 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 7 1633 758 193 50 0 chr3 137460808 137460948 -22138835 + B1_Mur1 SINE Alu 2 148 -1 7 1633 209 30 61 0 chr3 137460967 137461000 -22138783 + (CAGAGA)n Simple_repeat Simple_repeat 2 36 0 7 1633 196 264 209 0 chr3 137461070 137461180 -22138603 + MIRc SINE MIR 79 211 -57 7 1633 481 299 41 14 chr3 137461195 137461341 -22138442 - ID_B1 SINE B4 -10 214 65 7 1633 25 0 0 0 chr3 137461414 137461439 -22138344 + AT_rich Low_complexity Low_complexity 1 25 0 7 1633 678 271 0 48 chr3 137461491 137461658 -22138125 - B3A SINE B2 -33 165 7 7 1633 399 283 0 10 chr3 137462130 137462230 -22137553 + RSINE1 SINE B4 3 101 -64 7 1633 1074 58 0 0 chr3 137462269 137462407 -22137376 + (GAAA)n Simple_repeat Simple_repeat 4 141 0 7 1633 454 205 107 33 chr3 137462558 137462679 -22137104 - B1_Mur1 SINE Alu -3 146 17 7 1633 201 74 0 0 chr3 137462977 137463004 -22136779 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 7 1633 236 294 152 0 chr3 137463004 137463096 -22136687 - ID_B1 SINE B4 -10 214 109 7 1633 227 186 70 0 chr3 137463138 137463224 -22136559 + (TA)n Simple_repeat Simple_repeat 1 92 0 7 1633 279 0 0 0 chr3 137463225 137463256 -22136527 + (TG)n Simple_repeat Simple_repeat 2 32 0 7 1633 1262 27 0 0 chr3 137463634 137463780 -22136003 - B1_Mm SINE Alu 0 147 2 7 1633 526 278 38 0 chr3 137463833 137463966 -22135817 - RSINE1 SINE B4 -17 148 11 7 1633 453 205 0 0 chr3 137464211 137464333 -22135450 + GA-rich Low_complexity Low_complexity 3 124 0 7 1633 238 279 56 28 chr3 137464358 137464465 -22135318 + PB1D10 SINE Alu 1 110 -7 7 1633 371 297 27 0 chr3 137465279 137465390 -22134393 + PB1D10 SINE Alu 2 115 -2 7 1633 304 327 19 19 chr3 137465756 137465862 -22133921 - B1F2 SINE Alu -42 107 2 7 1633 555 270 13 38 chr3 137466046 137466204 -22133579 + RSINE1 SINE B4 12 165 0 7 1633 342 311 30 8 chr3 137466240 137466373 -22133410 + B1F SINE Alu 13 148 -1 7 1633 412 71 0 0 chr3 137466398 137466454 -22133329 - ORR1B1 LTR MaLR -8 359 304 7 1633 3192 68 2 0 chr3 137466457 137466852 -22132931 + MTA_Mm LTR MaLR 1 396 0 7 1633 978 207 128 0 chr3 137466854 137467096 -22132687 - ORR1B1 LTR MaLR -121 273 1 7 1633 279 0 0 0 chr3 137467303 137467334 -22132449 + (TC)n Simple_repeat Simple_repeat 2 32 0 7 1633 279 0 0 0 chr3 137467334 137467364 -22132419 + (TG)n Simple_repeat Simple_repeat 2 32 0 7 1633 518 260 63 0 chr3 137467365 137467492 -22132291 - ID_B1 SINE B4 -6 218 84 7 1633 1085 216 111 7 chr3 137467745 137468034 -22131749 + MTD LTR MaLR 43 361 -58 7 1633 919 256 5 0 chr3 137468079 137468294 -22131489 - B3 SINE B2 0 216 1 7 1633 210 307 157 11 chr3 137468306 137468395 -22131388 - PB1D7 SINE Alu -7 113 12 7 1633 249 108 0 0 chr3 137468414 137468451 -22131332 + (TC)n Simple_repeat Simple_repeat 1 37 0 7 1633 291 280 36 36 chr3 137469188 137469299 -22130484 - PB1 SINE Alu -4 123 13 7 1633 539 254 17 0 chr3 137469512 137469630 -22130153 + ID_B1 SINE B4 85 204 -20 7 1633 259 318 168 7 chr3 137470583 137470732 -22129051 + MLT1F2 LTR MaLR 266 438 -122 7 1633 2387 161 30 76 chr3 137471029 137471558 -22128225 - RLTR18B LTR ERVK -6 506 2 7 1633 449 281 24 32 chr3 137471930 137472050 -22127733 - ID_B1 SINE B4 -3 221 103 7 1633 2000 151 80 3 chr3 137472050 137472423 -22127360 + MTB_Mm LTR MaLR 1 402 -5 7 1633 365 292 19 0 chr3 137472432 137472538 -22127245 + ID_B1 SINE B4 104 211 -13 7 1633 207 0 0 0 chr3 137472538 137472561 -22127222 + (TAAA)n Simple_repeat Simple_repeat 1 23 0 7 1633 231 306 96 32 chr3 137472611 137472736 -22127047 + MTEa LTR MaLR 4 136 -223 7 1633 303 242 71 31 chr3 137472887 137472985 -22126798 + MTEa LTR MaLR 278 379 0 7 1633 1619 155 214 24 chr3 137473043 137473374 -22126409 - ORR1B1 LTR MaLR 0 394 1 7 1633 378 0 0 0 chr3 137473429 137473471 -22126312 + (CCCCCA)n Simple_repeat Simple_repeat 1 42 0 7 1633 185 61 30 0 chr3 137473566 137473582 -22126201 + (TTTTG)n Simple_repeat Simple_repeat 5 20 0 7 1633 1106 82 7 0 chr3 137473582 137473729 -22126054 - B1_Mus1 SINE Alu 0 148 1 7 1633 185 61 30 0 chr3 137473729 137473745 -22126038 + (TTTTG)n Simple_repeat Simple_repeat 3 19 0 7 1633 279 197 106 0 chr3 137473746 137473812 -22125971 + RLTR11A2 LTR ERVK 447 519 -8 7 1633 240 299 60 0 chr3 137473859 137473926 -22125857 + RSINE1 SINE B4 70 140 -25 7 1633 395 247 0 12 chr3 137474527 137474613 -22125170 - ID_B1 SINE B4 -7 217 133 7 1633 21 36 0 0 chr3 137474619 137474647 -22125136 + AT_rich Low_complexity Low_complexity 1 28 0 7 1633 260 234 84 11 chr3 137474906 137475001 -22124782 + HAL1 LINE L1 1231 1332 -1175 7 1633 547 239 0 0 chr3 137475040 137475157 -22124626 - RSINE1 SINE B4 -38 127 11 7 1633 718 207 127 11 chr3 137475289 137475470 -22124313 - B3 SINE B2 0 216 15 7 1633 21 36 0 0 chr3 137475719 137475747 -22124036 + AT_rich Low_complexity Low_complexity 1 28 0 7 1633 2167 166 92 13 chr3 137476475 137476865 -22122918 + MTC LTR MaLR 1 421 0 7 1633 554 261 42 0 chr3 137476941 137477083 -22122700 - B1F1 SINE Alu -1 148 1 7 1633 455 289 28 0 chr3 137477148 137477290 -22122493 + ID_B1 SINE B4 70 215 -9 7 1633 249 267 0 0 chr3 137477631 137477691 -22122092 + B3A SINE B2 70 129 -69 7 1633 408 293 30 0 chr3 137477726 137477859 -22121924 + ID_B1 SINE B4 81 217 -7 7 1633 1103 89 136 6 chr3 137477873 137478042 -22121741 - B2_Mm1t SINE B2 -2 191 1 7 1633 2234 152 50 27 chr3 137478165 137478604 -22121179 + RLTR12A LTR ERVK 1 449 -119 7 1633 480 125 71 20 chr3 137478604 137478702 -22121081 - RLTR11A2 LTR ERVK 0 527 425 7 1633 1064 43 0 0 chr3 137478705 137478843 -22120940 - B1_Mm SINE Alu 0 147 10 7 1633 2060 145 36 29 chr3 137478839 137479259 -22120524 - RLTR11A2 LTR ERVK -104 423 1 7 1633 649 161 8 0 chr3 137479259 137479383 -22120400 + RLTR12A LTR ERVK 444 568 0 7 1633 347 276 0 20 chr3 137481553 137481638 -22118145 + ID_B1 SINE B4 127 211 -13 7 1633 180 0 0 0 chr3 137481638 137481658 -22118125 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 7 1633 347 276 0 20 chr3 137481658 137481672 -22118111 + ID_B1 SINE B4 212 224 0 7 1633 477 90 0 0 chr3 137481754 137481821 -22117962 + (TTTC)n Simple_repeat Simple_repeat 2 68 0 7 1633 410 134 59 35 chr3 137482396 137482481 -22117302 + ID_B1 SINE B4 86 172 -52 7 1633 349 245 48 29 chr3 137482481 137482501 -22117282 + PB1D10 SINE Alu 5 111 -6 7 1633 1160 236 22 22 chr3 137483041 137483318 -22116465 + MLT1B LTR MaLR 2 278 -112 7 1633 591 290 80 0 chr3 137483430 137483630 -22116153 - B3 SINE B2 0 216 1 7 1633 561 92 20 10 chr3 137485864 137485963 -22113820 + (TA)n Simple_repeat Simple_repeat 2 101 0 7 1633 608 268 32 74 chr3 137485999 137486188 -22113595 + B3A SINE B2 36 216 0 7 1633 216 204 0 20 chr3 137486298 137486348 -22113435 + (CAAA)n Simple_repeat Simple_repeat 4 52 0 7 1633 1407 72 0 25 chr3 137486800 137486999 -22112784 + B2_Mm2 SINE B2 1 194 -1 7 1633 675 189 278 0 chr3 137487024 137487193 -22112590 + B3 SINE B2 1 216 0 7 1633 826 254 218 59 chr3 137487445 137488398 -22111385 + L1_Rod LINE L1 1166 2269 -3611 7 1633 1713 282 50 83 chr3 137488394 137489070 -22110713 + Lx8 LINE L1 6815 7468 -5 7 1633 1127 62 7 0 chr3 137489155 137489300 -22110483 + B1_Mus1 SINE Alu 1 146 -2 7 1633 207 0 0 0 chr3 137489300 137489323 -22110460 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 7 1633 1094 157 156 52 chr3 137489553 137489842 -22109941 - RMER2 LTR ERV1 -248 319 1 7 1633 463 219 291 33 chr3 137489852 137490065 -22109718 + MTD LTR MaLR 152 419 0 7 1633 242 161 125 0 chr3 137490068 137490124 -22109659 - ID4 SINE ID -19 64 2 7 1633 244 0 56 0 chr3 137490181 137490217 -22109566 + (CAAAA)n Simple_repeat Simple_repeat 3 40 0 7 1633 243 256 34 34 chr3 137490357 137490446 -22109337 + MLT1A1 LTR MaLR 1 89 -319 7 1633 242 263 116 58 chr3 137490548 137490669 -22109114 + MLT1A1 LTR MaLR 269 396 -12 7 1633 1516 38 43 0 chr3 137491384 137491569 -22108214 - B2_Mm1a SINE B2 0 193 1 7 1633 321 225 117 0 chr3 137491656 137491767 -22108016 - U3 snRNA snRNA -80 137 14 7 1633 1322 234 68 18 chr3 137491769 137492165 -22107618 + MTD LTR MaLR 4 419 0 7 1633 625 265 10 62 chr3 137492211 137492404 -22107379 - B3A SINE B2 -15 183 1 7 1633 1252 34 0 0 chr3 137492451 137492597 -22107186 + B1_Mus2 SINE Alu 1 146 -1 7 1633 314 108 15 0 chr3 137492598 137492663 -22107120 + (CAAAAA)n Simple_repeat Simple_repeat 1 66 0 7 1633 251 266 0 15 chr3 137492973 137493038 -22106745 + MTEb LTR MaLR 294 357 -22 7 1633 430 256 150 30 chr3 137493113 137493246 -22106537 + RSINE1 SINE B4 4 152 -13 7 1633 240 237 39 88 chr3 137493599 137493701 -22106082 - MLT1A LTR MaLR -264 110 14 7 1633 182 229 97 16 chr3 137493867 137493929 -22105854 - MIRc SINE MIR -141 127 61 7 1633 286 197 40 53 chr3 137494177 137494252 -22105531 - B1F SINE Alu -3 146 73 7 1633 590 272 0 0 chr3 137494253 137494378 -22105405 - ID_B1 SINE B4 -13 211 87 7 204 635 222 58 23 chr3 137494406 137494577 -22105206 - L1MB1 LINE L1 -1 6167 5991 7 1634 4511 82 37 3 chr3 137494606 137495229 -22104554 + L1_Mus4 LINE L1 5983 6626 -10 7 1634 513 0 0 0 chr3 137495241 137495298 -22104485 + (GAAA)n Simple_repeat Simple_repeat 1 57 0 8 1634 632 225 49 169 chr3 137495325 137495550 -22104233 + B4 SINE B4 5 202 -90 8 1634 650 44 11 0 chr3 137495553 137495643 -22104140 + (GA)n Simple_repeat Simple_repeat 2 92 0 8 1634 444 282 62 21 chr3 137495740 137495885 -22103898 + RSINE1 SINE B4 15 165 0 8 1634 205 118 39 0 chr3 137496486 137496537 -22103246 + (TA)n Simple_repeat Simple_repeat 1 53 0 8 1634 364 208 84 9 chr3 137496905 137497012 -22102771 - MTD LTR MaLR 0 419 305 8 1634 248 286 0 0 chr3 137497081 137497137 -22102646 + CT-rich Low_complexity Low_complexity 6 61 0 8 1634 403 188 137 10 chr3 137497137 137497239 -22102544 - PB1D9 SINE Alu -5 115 1 8 1634 305 342 9 9 chr3 137497310 137497422 -22102361 - MTD LTR MaLR -240 179 68 8 1634 1227 41 0 13 chr3 137497423 137497572 -22102211 + B1_Mm SINE Alu 1 147 0 8 1634 401 200 91 156 chr3 137497748 137497902 -22101881 + B1F SINE Alu 5 148 -1 8 1634 378 0 0 0 chr3 137497908 137497950 -22101833 + (TAA)n Simple_repeat Simple_repeat 3 44 0 8 1634 208 147 0 0 chr3 137497963 137497997 -22101786 + (A)n Simple_repeat Simple_repeat 1 34 0 8 1634 300 219 62 0 chr3 137498127 137498191 -22101592 + B1_Mur3 SINE Alu 2 69 -80 8 1634 573 88 0 0 chr3 137498235 137498315 -22101468 + (TC)n Simple_repeat Simple_repeat 1 80 0 8 1634 385 167 0 0 chr3 137498316 137498382 -22101401 + B1_Mur2 SINE Alu 81 146 -3 8 1634 564 15 0 0 chr3 137498382 137498447 -22101336 + (GAAA)n Simple_repeat Simple_repeat 2 66 0 8 1634 846 147 0 0 chr3 137498451 137498594 -22101189 + (GGGA)n Simple_repeat Simple_repeat 3 145 0 8 1634 208 239 0 0 chr3 137498958 137499004 -22100779 + (CA)n Simple_repeat Simple_repeat 1 46 0 8 1634 286 279 184 6 chr3 137499675 137499836 -22099947 + ID_B1 SINE B4 39 224 -68 8 1634 324 150 0 0 chr3 137499837 137499917 -22099866 + (GAA)n Simple_repeat Simple_repeat 2 81 0 8 1634 636 50 0 0 chr3 137499920 137500000 -22099783 + (GGGGA)n Simple_repeat Simple_repeat 4 83 0 8 1634 897 86 0 0 chr3 137500000 137500128 -22099655 + (GAGAA)n Simple_repeat Simple_repeat 4 131 0 1 1634 366 288 109 21 chr3 137500138 137500376 -22099407 + Zaphod DNA Tip100 3591 3849 -182 2 1634 963 119 14 0 chr3 137500384 137500527 -22099256 + B1_Mur4 SINE Alu 3 147 -3 3 1634 667 198 103 0 chr3 137500597 137500723 -22099060 + B1_Mur2 SINE Alu 1 139 -10 4 1634 324 0 0 0 chr3 137500728 137500764 -22099019 + (TC)n Simple_repeat Simple_repeat 2 37 0 5 1634 4297 99 20 24 chr3 137500896 137501592 -22098191 + RLTR19B LTR ERVK 23 715 0 6 1634 1538 181 0 11 chr3 137501592 137501869 -22097914 - MTC LTR MaLR -38 383 110 7 1634 927 130 6 78 chr3 137501871 137502038 -22097745 + L1VL2 LINE L1 53 207 -6128 8 1634 728 71 125 0 chr3 137502011 137502123 -22097660 + L1VL2 LINE L1 698 823 -5512 8 1634 1129 81 0 20 chr3 137502123 137502274 -22097509 + B1_Mus1 SINE Alu 1 148 0 9 1634 12211 82 30 17 chr3 137502279 137503656 -22096127 + MusHAL1 LINE L1 216 1611 -1101 1 1634 504 0 0 0 chr3 137503656 137503712 -22096071 + (CA)n Simple_repeat Simple_repeat 1 56 0 1 1634 12211 82 30 17 chr3 137503712 137504175 -22095608 + MusHAL1 LINE L1 1612 2079 -633 1 1634 668 144 17 0 chr3 137504263 137504381 -22095402 - MTC LTR MaLR -301 120 1 7 1634 1926 186 47 0 chr3 137504383 137504765 -22095018 - MTC LTR MaLR -21 400 1 1 1634 1414 80 16 11 chr3 137504895 137505084 -22094699 + B2_Mm2 SINE B2 1 190 -5 1 1634 942 168 5 62 chr3 137505160 137505370 -22094413 - RLTR14 LTR ERV1 -137 245 48 1 1634 344 245 165 68 chr3 137505394 137505630 -22094153 + Lx8 LINE L1 7213 7471 -2 1 1634 203 81 54 0 chr3 137505805 137505842 -22093941 + (TTTC)n Simple_repeat Simple_repeat 2 40 0 1 1634 25 0 0 0 chr3 137505845 137505870 -22093913 + AT_rich Low_complexity Low_complexity 1 25 0 1 1634 537 233 17 184 chr3 137505872 137506051 -22093732 - B3 SINE B2 -6 189 41 1 1634 1722 108 105 0 chr3 137506080 137506366 -22093417 + ORR1B1 LTR MaLR 71 386 -8 1 1634 243 167 0 0 chr3 137506370 137506412 -22093371 - B2_Mm2 SINE B2 -153 42 1 1 1634 436 350 0 21 chr3 137506425 137506568 -22093215 - RSINE1 SINE B4 -21 144 5 2 1634 319 288 78 23 chr3 137506982 137506996 -22092787 + B1F2 SINE Alu 14 148 -1 2 1634 410 281 35 0 chr3 137506996 137507110 -22092673 + ID_B1 SINE B4 107 224 0 2 1634 452 186 87 10 chr3 137507237 137507340 -22092443 + B3A SINE B2 11 121 -77 2 1634 1920 89 11 142 chr3 137507379 137507557 -22092226 + ORR1A2 LTR MaLR 2 133 -194 2 1634 1005 76 38 0 chr3 137507557 137507689 -22092094 - B1_Mus1 SINE Alu -11 137 1 2 1634 1920 89 11 142 chr3 137507689 137507876 -22091907 + ORR1A2 LTR MaLR 134 319 -8 2 1634 289 268 60 33 chr3 137508185 137508296 -22091487 - PB1D7 SINE Alu -1 119 6 2 1634 1105 272 6 56 chr3 137508734 137508863 -22090920 + MTD LTR MaLR 83 205 -214 2 1634 1415 68 15 45 chr3 137508863 137509063 -22090720 + B2_Mm2 SINE B2 2 195 0 2 1634 1105 272 6 56 chr3 137509063 137509275 -22090508 + MTD LTR MaLR 206 407 -12 2 1634 258 170 38 0 chr3 137509395 137509448 -22090335 - RLTR28B LTR ERVL -24 500 446 2 1634 183 146 0 0 chr3 137509545 137509586 -22090197 + (TTTTTG)n Simple_repeat Simple_repeat 2 42 0 3 1634 734 203 178 69 chr3 137509595 137509870 -22089913 - RLTR28B LTR ERVL -176 305 1 2 1634 207 0 0 0 chr3 137509910 137509933 -22089850 + (TGG)n Simple_repeat Simple_repeat 1 23 0 3 1634 662 213 59 0 chr3 137510062 137510198 -22089585 + B1_Mur1 SINE Alu 3 146 -3 3 1634 29 28 0 0 chr3 137510237 137510273 -22089510 + AT_rich Low_complexity Low_complexity 1 36 0 3 1634 684 235 216 61 chr3 137510497 137510821 -22088962 - MTE2b LTR MaLR 0 379 6 3 1634 2084 220 20 16 chr3 137510957 137511455 -22088328 - RLTR16 LTR ERVK -5 500 1 3 1634 796 150 13 75 chr3 137511857 137512016 -22087767 + B1_Mur4 SINE Alu 2 150 0 3 1634 3199 26 8 5 chr3 137512209 137512592 -22087191 - L1Md_F2 LINE L1 -1 6581 6198 3 1634 398 136 12 0 chr3 137512623 137512704 -22087079 + (TG)n Simple_repeat Simple_repeat 1 82 0 3 1634 720 227 0 0 chr3 137512754 137512895 -22086888 + ORR1D2 LTR MaLR 1 141 -229 3 1634 1155 130 11 17 chr3 137512914 137513094 -22086689 + B2_Mm1t SINE B2 1 179 -14 4 1634 294 130 361 9 chr3 137513172 137513280 -22086503 + B2_Mm2 SINE B2 47 192 -3 4 1634 875 200 113 9 chr3 137513279 137513491 -22086292 + ORR1D2 LTR MaLR 137 370 0 3 1634 332 222 61 12 chr3 137513491 137513571 -22086212 - RSINE1 SINE B4 -47 118 35 4 1634 2474 95 3 0 chr3 137513673 137513999 -22085784 + ORR1A2 LTR MaLR 1 327 0 4 1634 701 251 23 11 chr3 137514238 137514415 -22085368 + B3A SINE B2 2 180 -18 4 1634 244 325 111 26 chr3 137514635 137514752 -22085031 - ID_B1 SINE B4 -20 204 78 4 1634 755 203 21 0 chr3 137514794 137514937 -22084846 - B1_Mur1 SINE Alu -1 148 3 4 1634 203 95 0 45 chr3 137514938 137514982 -22084801 + (TTTTG)n Simple_repeat Simple_repeat 1 42 0 4 1634 1203 55 7 0 chr3 137515003 137515148 -22084635 - B1_Mus2 SINE Alu -1 146 1 4 1634 1229 28 0 0 chr3 137515454 137515597 -22084186 - B1_Mm SINE Alu -3 144 2 4 1634 252 170 0 0 chr3 137515673 137515726 -22084057 + (CA)n Simple_repeat Simple_repeat 1 53 0 5 1634 307 324 58 22 chr3 137516307 137516446 -22083337 + MTEa LTR MaLR 48 191 -168 5 1634 357 176 12 3 chr3 137516498 137516580 -22083203 + MTEa LTR MaLR 295 379 0 5 1634 1138 256 96 11 chr3 137516652 137517027 -22082756 + MTD LTR MaLR 1 407 -12 5 1634 375 310 57 58 chr3 137517054 137517282 -22082501 + MLT1A1 LTR MaLR 87 335 -73 5 1634 500 281 22 7 chr3 137517511 137517647 -22082136 + ID_B1 SINE B4 85 222 -2 5 1634 866 203 0 0 chr3 137517654 137517797 -22081986 + B1_Mur3 SINE Alu 3 145 -4 5 1634 263 49 0 24 chr3 137517799 137517841 -22081942 + (CAAAA)n Simple_repeat Simple_repeat 2 42 0 5 1634 1670 185 144 81 chr3 137517944 137518438 -22081345 - MT2A LTR ERVL -8 525 1 5 1634 870 43 0 0 chr3 137519689 137519804 -22079979 - L1Md_A LINE L1 0 6582 6468 5 1634 1140 20 26 13 chr3 137519917 137520071 -22079712 + (TTTTC)n Simple_repeat Simple_repeat 5 160 0 5 1634 253 22 130 0 chr3 137520071 137520117 -22079666 + CT-rich Low_complexity Low_complexity 5 56 0 6 1634 489 138 0 0 chr3 137520116 137520196 -22079587 + (TTTTC)n Simple_repeat Simple_repeat 3 82 0 6 1634 750 199 13 0 chr3 137520217 137520365 -22079418 - B1_Mur4 SINE Alu 0 150 1 6 1634 800 283 14 14 chr3 137520384 137520599 -22079184 + B3 SINE B2 2 216 0 6 1634 266 264 68 14 chr3 137521436 137521509 -22078274 + ID4 SINE ID 1 77 -6 6 1634 320 217 0 0 chr3 137521752 137521821 -22077962 - ORR1D2 LTR MaLR 0 370 302 6 1634 1342 82 38 0 chr3 137521821 137522005 -22077778 + B2_Mm1a SINE B2 2 192 -1 6 1634 429 70 0 0 chr3 137522005 137522062 -22077721 + (GA)n Simple_repeat Simple_repeat 1 57 0 6 1634 402 270 367 0 chr3 137522062 137522272 -22077511 - ORR1D2 LTR MaLR -55 315 29 6 1634 1421 229 99 23 chr3 137522282 137522667 -22077116 + MTD LTR MaLR 6 419 0 6 1634 1122 167 70 45 chr3 137522693 137522717 -22077066 - ORR1D2-int LTR MaLR 0 1370 1354 6 1634 1919 120 159 39 chr3 137522717 137523126 -22076657 - RMER6B LTR ERVK 0 461 4 6 1634 1122 167 70 45 chr3 137523126 137523345 -22076438 - ORR1D2-int LTR MaLR -17 1353 1121 6 1634 829 206 70 11 chr3 137523825 137524011 -22075772 - ORR1D2-int LTR MaLR -247 1123 927 6 1634 586 232 40 23 chr3 137523999 137524191 -22075592 - ORR1D2-int LTR MaLR -1382 198 3 6 1634 1101 256 69 29 chr3 137524195 137524541 -22075242 - ORR1D2 LTR MaLR -3 367 8 6 1634 842 172 80 6 chr3 137524650 137524825 -22074958 - ORR1C2 LTR MaLR 0 384 197 7 1634 935 63 0 0 chr3 137524822 137524949 -22074834 + B1_Mus1 SINE Alu 22 148 0 7 1634 189 0 0 0 chr3 137524949 137524970 -22074813 + (A)n Simple_repeat Simple_repeat 1 21 0 7 1634 709 257 29 10 chr3 137524970 137525174 -22074609 - ORR1C2 LTR MaLR -166 208 1 7 1634 496 301 0 29 chr3 137525338 137525478 -22074305 + ID_B1 SINE B4 88 223 -1 7 1634 684 214 0 21 chr3 137525736 137525879 -22073904 - B1_Mur1 SINE Alu 0 149 10 7 1634 266 189 110 102 chr3 137526252 137526370 -22073413 + RSINE1 SINE B4 47 165 0 7 1634 23 101 0 0 chr3 137527676 137527755 -22072028 + GC_rich Low_complexity Low_complexity 1 79 0 7 1634 289 219 35 41 chr3 137527821 137527992 -22071791 + (CGGG)n Simple_repeat Simple_repeat 1 170 0 7 1634 23 54 0 0 chr3 137530688 137530725 -22069058 + GC_rich Low_complexity Low_complexity 1 37 0 7 1634 181 155 17 17 chr3 137530754 137530813 -22068970 + (CCGCG)n Simple_repeat Simple_repeat 4 62 0 7 1634 42 65 0 0 chr3 137531006 137531083 -22068700 + GC_rich Low_complexity Low_complexity 1 77 0 8 1634 230 0 0 32 chr3 137531574 137531605 -22068178 + (TGAA)n Simple_repeat Simple_repeat 3 32 0 8 1634 598 284 108 13 chr3 137531950 137532264 -22067519 - L1MB2 LINE L1 -48 6123 5780 8 1634 1160 224 118 15 chr3 137532446 137532844 -22066939 - L1MB2 LINE L1 -413 5758 5320 8 1634 396 53 0 3 chr3 137532851 137532913 -22066870 + B1_Mur3 SINE Alu 68 148 -1 8 1634 216 122 0 0 chr3 137532913 137532954 -22066829 + (CCAA)n Simple_repeat Simple_repeat 4 44 0 8 1634 484 234 102 39 chr3 137532976 137533181 -22066602 - L1MB2 LINE L1 -853 5287 5070 8 1634 224 59 0 29 chr3 137534376 137534411 -22065372 + (TTTTC)n Simple_repeat Simple_repeat 2 35 0 8 1634 1148 74 0 0 chr3 137534411 137534559 -22065224 - B1_Mus1 SINE Alu 0 148 1 8 1634 747 108 0 0 chr3 137534655 137534766 -22065017 + (TC)n Simple_repeat Simple_repeat 1 111 0 8 1634 496 216 14 88 chr3 137534770 137534917 -22064866 - B1_Mur1 SINE Alu -12 137 2 8 1634 513 252 22 15 chr3 137535587 137535724 -22064059 - B3 SINE B2 0 216 79 8 1634 265 333 0 11 chr3 137535858 137535946 -22063837 + CT-rich Low_complexity Low_complexity 2 88 0 9 1634 286 300 0 20 chr3 137535956 137536058 -22063725 - ID_B1 SINE B4 -37 187 88 9 1634 463 160 0 0 chr3 137536276 137536351 -22063432 - B3 SINE B2 -139 77 3 8 1634 492 208 9 19 chr3 137536612 137536720 -22063063 - B1F2 SINE Alu -1 148 42 9 1634 405 0 0 0 chr3 137537092 137537137 -22062646 + (CA)n Simple_repeat Simple_repeat 2 46 0 9 1634 929 200 54 73 chr3 137537137 137537455 -22062328 - MT2B LTR ERVL -124 477 10 9 1634 232 171 0 0 chr3 137537547 137537588 -22062195 - L1MC5 LINE L1 -808 7153 7113 9 1634 3752 58 16 62 chr3 137537635 137538152 -22061631 + MT2_Mm LTR ERVL 1 493 0 9 1634 255 31 0 0 chr3 137538197 137538229 -22061554 + (T)n Simple_repeat Simple_repeat 1 32 0 9 1634 1722 21 0 0 chr3 137538236 137538429 -22061354 - B2_Mm1a SINE B2 0 193 1 9 1634 635 206 96 0 chr3 137538433 137538569 -22061214 - B1_Mur2 SINE Alu 0 149 1 9 1634 1422 74 31 11 chr3 137538688 137538879 -22060904 - B2_Mm2 SINE B2 0 195 1 1 1634 392 315 49 8 chr3 137538928 137539126 -22060657 - L1MC5 LINE L1 -1006 6876 6654 9 1634 336 272 37 0 chr3 137539211 137539292 -22060491 - PB1D9 SINE Alu -36 84 1 1 1634 1331 116 0 0 chr3 137539704 137539894 -22059889 + B2_Mm2 SINE B2 2 191 -4 1 1634 246 241 86 72 chr3 137539980 137540132 -22059651 - L1MC4 LINE L1 -116 7926 7773 1 1634 1462 153 99 3 chr3 137540403 137540705 -22059078 - ORR1C2 LTR MaLR 0 384 54 1 1634 1087 285 18 18 chr3 137541202 137541538 -22058245 - MTEa LTR MaLR 0 379 44 1 1634 443 231 46 0 chr3 137542024 137542132 -22057651 - PB1D10 SINE Alu 0 117 5 1 1634 342 0 0 0 chr3 137542327 137542365 -22057418 + (TG)n Simple_repeat Simple_repeat 1 38 0 1 1634 330 281 19 37 chr3 137542368 137542475 -22057308 - RSINE1 SINE B4 -50 115 11 1 1634 253 114 0 0 chr3 137542849 137542884 -22056899 + (TTG)n Simple_repeat Simple_repeat 2 36 0 1 1634 978 167 0 0 chr3 137542885 137543065 -22056718 + (CTG)n Simple_repeat Simple_repeat 1 180 0 1 1634 195 42 0 0 chr3 137544114 137544138 -22055645 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 1 1634 712 144 108 0 chr3 137544138 137544277 -22055506 - B2_Mm2 SINE B2 -33 162 9 1 1634 7654 67 3 38 chr3 137544296 137545111 -22054672 - L1_Mus1 LINE L1 0 6654 5793 1 1634 1261 34 0 7 chr3 137545111 137545259 -22054524 - B1_Mm SINE Alu 0 147 1 1 1634 7654 81 2 58 chr3 137545259 137545581 -22054202 - L1_Mus1 LINE L1 -775 5792 5473 1 1634 294 27 0 0 chr3 137545598 137545623 -22054160 + (T)n Simple_repeat Simple_repeat 1 25 0 1 1634 965 118 28 7 chr3 137545623 137545768 -22054015 - B1_Mus1 SINE Alu 0 148 1 1 1634 294 27 0 0 chr3 137545768 137545779 -22054004 + (T)n Simple_repeat Simple_repeat 1 11 0 1 1634 216 261 123 0 chr3 137545902 137545967 -22053816 - ID4_ SINE ID -9 74 2 1 1634 265 264 113 7 chr3 137545974 137546168 -22053615 - L1MB5 LINE L1 -248 5930 5708 1 1634 197 132 0 26 chr3 137546212 137546251 -22053532 + CT-rich Low_complexity Low_complexity 3 40 0 1 1634 607 222 36 15 chr3 137546253 137546390 -22053393 - B1_Mur1 SINE Alu -8 141 2 1 1634 341 337 97 0 chr3 137546539 137546735 -22053048 + ID_B1 SINE B4 4 218 -6 1 1634 656 279 26 0 chr3 137547249 137547439 -22052344 - B3A SINE B2 -1 197 3 1 1634 192 40 0 0 chr3 137547506 137547531 -22052252 + (T)n Simple_repeat Simple_repeat 1 25 0 1 1634 247 161 0 35 chr3 137547816 137547874 -22051909 - B1_Mur4 SINE Alu 0 150 95 1 1634 432 303 83 0 chr3 137547930 137548062 -22051721 + B1F SINE Alu 1 143 -6 1 1634 415 226 0 27 chr3 137549670 137549835 -22049948 - B3A SINE B2 0 216 4 1 1634 216 0 0 0 chr3 137550010 137550034 -22049749 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1 1634 1066 67 0 0 chr3 137550035 137550170 -22049613 - B1_Mm SINE Alu -12 135 1 1 1634 363 23 0 0 chr3 137550209 137550253 -22049530 + (TG)n Simple_repeat Simple_repeat 1 44 0 1 1634 22 35 0 0 chr3 137550295 137550324 -22049459 + AT_rich Low_complexity Low_complexity 1 29 0 1 1634 615 128 0 0 chr3 137550359 137550468 -22049315 + (TG)n Simple_repeat Simple_repeat 2 110 0 1 1634 21 36 0 0 chr3 137550826 137550854 -22048929 + AT_rich Low_complexity Low_complexity 1 28 0 1 1634 306 208 38 94 chr3 137551479 137551497 -22048286 - PB1D10 SINE Alu 0 117 105 1 1634 213 39 0 0 chr3 137551497 137551523 -22048260 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 1 1634 306 208 38 94 chr3 137551523 137551610 -22048173 - PB1D10 SINE Alu -13 104 18 1 1634 220 234 125 38 chr3 137551543 137551623 -22048160 - ID_B1 SINE B4 -58 166 80 1 1634 1520 161 48 88 chr3 137551650 137552024 -22047759 - ORR1C1 LTR MaLR -18 360 2 1 1634 425 257 56 14 chr3 137552072 137552214 -22047569 + MTD LTR MaLR 1 148 -271 1 1634 2083 175 24 7 chr3 137552239 137552648 -22047135 + MTC LTR MaLR 6 421 0 1 1634 490 245 172 15 chr3 137552648 137552851 -22046932 + MTD LTR MaLR 145 379 -40 1 1634 1883 166 67 5 chr3 137553036 137553423 -22046360 - MTD LTR MaLR -8 411 1 1 1634 982 239 72 185 chr3 137553423 137553576 -22046207 - MTD-int LTR MaLR 0 1258 1097 1 1634 1287 79 34 0 chr3 137553576 137553753 -22046030 + B2_Mm2 SINE B2 4 186 -9 1 1634 982 239 72 185 chr3 137553753 137553778 -22046005 - MTD-int LTR MaLR -162 1096 1081 1 1634 661 187 109 22 chr3 137553778 137553915 -22045868 + B1_Mur2 SINE Alu 1 149 0 1 1634 982 239 72 185 chr3 137553915 137554320 -22045463 - MTD-int LTR MaLR -178 1080 741 1 1634 467 125 19 19 chr3 137554527 137554633 -22045150 + C-rich Low_complexity Low_complexity 4 109 0 1 1634 1058 62 7 0 chr3 137556064 137556210 -22043573 - B1_Mm SINE Alu 0 147 1 1 1634 249 240 16 32 chr3 137556103 137556228 -22043555 - MTD-int LTR MaLR -755 754 632 1 1634 342 282 13 0 chr3 137556522 137556600 -22043183 - ID4 SINE ID -3 80 2 1 1634 264 281 76 33 chr3 137556605 137556697 -22043086 - PB1D10 SINE Alu -7 110 15 1 1634 739 70 198 9 chr3 137557266 137557382 -22042401 + B1_Mus1 SINE Alu 2 139 -9 1 1634 576 222 31 16 chr3 137557451 137557579 -22042204 + B1F2 SINE Alu 3 132 -17 1 1634 511 224 0 0 chr3 137557788 137557886 -22041897 + RSINE1 SINE B4 15 112 -53 1 1634 207 0 0 0 chr3 137557886 137557909 -22041874 + (CA)n Simple_repeat Simple_repeat 2 24 0 1 1634 518 223 193 6 chr3 137558253 137558429 -22041354 + B3 SINE B2 2 210 -6 1 1634 461 171 205 41 chr3 137558456 137558578 -22041205 + B1_Mus2 SINE Alu 9 150 0 1 1634 653 221 15 0 chr3 137558632 137558763 -22041020 + ID_B1 SINE B4 84 216 -8 1 1634 264 323 17 58 chr3 137558634 137558777 -22041006 - YREP_Mm Unknown Unknown -1501 311 176 1 1634 1194 198 9 5 chr3 137558777 137558990 -22040793 + B3 SINE B2 2 215 -1 1 1634 264 323 17 58 chr3 137558990 137559020 -22040763 - YREP_Mm Unknown Unknown -1637 175 145 1 1634 220 328 30 0 chr3 137559041 137559108 -22040675 + ID4_ SINE ID 12 80 -3 1 1634 231 36 0 0 chr3 137559752 137559780 -22040003 + (TCTA)n Simple_repeat Simple_repeat 3 30 0 1 1634 595 177 32 16 chr3 137559840 137559966 -22039817 - RSINE1 SINE B4 -36 129 2 1 1634 1228 48 0 0 chr3 137560270 137560417 -22039366 - B1_Mus1 SINE Alu 0 148 2 1 1634 312 200 0 0 chr3 137561022 137561082 -22038701 + ID_B1 SINE B4 91 150 -74 1 1634 353 278 77 67 chr3 137561121 137561398 -22038385 - ORR1E LTR MaLR -1 378 77 1 1634 403 319 138 38 chr3 137561702 137562128 -22037655 + L1MD1 LINE L1 856 1324 -5309 1 1634 891 142 0 0 chr3 137562391 137562539 -22037244 + (GAAA)n Simple_repeat Simple_repeat 4 151 0 1 1634 336 294 9 18 chr3 137562539 137562650 -22037133 + L1MD1 LINE L1 1623 1732 -4901 1 1634 315 0 0 0 chr3 137562825 137562860 -22036923 + (CA)n Simple_repeat Simple_repeat 2 36 0 1 1634 402 139 0 0 chr3 137562946 137563018 -22036765 + (CA)n Simple_repeat Simple_repeat 2 73 0 1 1634 1148 287 67 19 chr3 137563053 137563575 -22036208 + L1MD1 LINE L1 5733 6279 -354 1 1634 428 255 28 28 chr3 137563648 137563757 -22036026 - PB1D10 SINE Alu -8 109 1 1 1634 302 331 38 50 chr3 137563870 137564029 -22035754 + RSINE1 SINE B4 3 159 -6 1 1634 292 282 99 31 chr3 137564062 137564223 -22035560 + L1MD1 LINE L1 6454 6625 -8 1 1634 506 172 160 24 chr3 137564818 137564943 -22034840 - B1F1 SINE Alu -7 142 1 1 1634 355 182 143 33 chr3 137565401 137565492 -22034291 - B1F SINE Alu -3 146 46 1 1634 414 0 0 0 chr3 137567436 137567482 -22032301 + (TG)n Simple_repeat Simple_repeat 1 46 0 1 1634 189 0 0 0 chr3 137568390 137568411 -22031372 + (TAAAAA)n Simple_repeat Simple_repeat 2 22 0 1 1634 354 271 184 20 chr3 137569696 137569892 -22029891 - Lx8 LINE L1 -352 7121 6894 1 1634 866 61 0 0 chr3 137569911 137570026 -22029757 + B1_Mus1 SINE Alu 26 140 -8 1 1634 1202 296 102 6 chr3 137570049 137570522 -22029261 - Lx8 LINE L1 -592 6881 6364 1 1634 294 355 37 0 chr3 137570607 137570714 -22029069 + PB1D10 SINE Alu 2 112 -5 1 1634 776 164 22 0 chr3 137570981 137571115 -22028668 + B1_Mm SINE Alu 6 142 -5 1 1634 1223 27 0 20 chr3 137572177 137572327 -22027456 + B1_Mm SINE Alu 1 147 0 1 1634 385 157 10 43 chr3 137574038 137574155 -22025628 - B1_Mur1 SINE Alu -2 147 38 1 1634 252 86 0 0 chr3 137574671 137574706 -22025077 + (TG)n Simple_repeat Simple_repeat 1 35 0 1 1634 678 210 17 100 chr3 137574706 137574886 -22024897 - RSINE1 SINE B4 0 165 1 1 1634 334 160 67 0 chr3 137575181 137575256 -22024527 - HAL1-2a_MD LINE L1 -593 2431 2352 1 1634 1045 278 129 40 chr3 137575283 137575762 -22024021 - Lx8 LINE L1 -172 7301 6780 1 1634 273 188 57 14 chr3 137575953 137576023 -22023760 - U6 snRNA snRNA 0 107 35 1 1634 324 0 0 0 chr3 137576957 137576993 -22022790 + (TG)n Simple_repeat Simple_repeat 2 37 0 1 1634 1729 21 0 0 chr3 137577021 137577212 -22022571 + B2_Mm1a SINE B2 2 192 -1 1 1634 1693 31 0 0 chr3 137577436 137577628 -22022155 + B2_Mm1a SINE B2 2 193 0 1 1634 183 80 0 0 chr3 137577629 137577654 -22022129 + (GAAAA)n Simple_repeat Simple_repeat 2 26 0 1 1634 26 30 0 0 chr3 137577666 137577699 -22022084 + AT_rich Low_complexity Low_complexity 1 33 0 1 1634 417 276 8 17 chr3 137578122 137578240 -22021543 + PB1D10 SINE Alu 1 117 0 1 1634 248 0 31 0 chr3 137579165 137579197 -22020586 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 1 1634 209 211 18 0 chr3 137579556 137579613 -22020170 + CT-rich Low_complexity Low_complexity 3 60 0 1 1634 860 156 7 26 chr3 137579617 137579768 -22020015 - B1_Mur2 SINE Alu 0 149 2 1 1634 219 114 0 0 chr3 137579788 137579823 -22019960 + (TTCA)n Simple_repeat Simple_repeat 1 35 0 1 1634 24 53 0 0 chr3 137580024 137580062 -22019721 + AT_rich Low_complexity Low_complexity 1 38 0 1 1634 197 405 12 0 chr3 137580072 137580156 -22019627 - L2c LINE L2 -203 3184 3100 1 1634 1036 235 98 27 chr3 137580240 137580577 -22019206 + Lx8 LINE L1 7112 7472 -1 1 1634 23 0 0 0 chr3 137581416 137581439 -22018344 + GC_rich Low_complexity Low_complexity 1 23 0 1 1634 206 241 0 36 chr3 137582716 137582772 -22017011 - MIR SINE MIR -127 135 82 1 1634 21 0 0 0 chr3 137583180 137583201 -22016582 + AT_rich Low_complexity Low_complexity 1 21 0 1 1634 232 58 113 19 chr3 137583947 137584000 -22015783 + (TTAA)n Simple_repeat Simple_repeat 3 60 0 1 1634 400 328 28 28 chr3 137584074 137584253 -22015530 - Tigger6b DNA MER2_type 0 1597 1419 2 1634 1063 198 223 9 chr3 137584279 137584606 -22015177 - MTD LTR MaLR -22 397 1 2 1634 288 227 173 0 chr3 137584660 137584727 -22015056 + PB1D10 SINE Alu 1 80 -37 2 1634 305 295 79 32 chr3 137584727 137584853 -22014930 + RSINE1 SINE B4 3 134 -31 2 1634 282 294 84 0 chr3 137584920 137585063 -22014720 - Tigger6b DNA MER2_type -303 1294 1140 2 1634 723 249 61 0 chr3 137585569 137585750 -22014033 - B3 SINE B2 -5 211 20 2 1634 212 266 125 0 chr3 137585986 137586050 -22013733 - ID4_ SINE ID -11 72 1 2 1634 184 30 61 0 chr3 137586469 137586502 -22013281 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 2 1634 546 348 5 22 chr3 137586766 137586951 -22012832 + B3A SINE B2 1 182 -16 2 1634 279 93 25 51 chr3 137587178 137587257 -22012526 + (TCTG)n Simple_repeat Simple_repeat 4 80 0 2 1634 263 228 0 0 chr3 137587287 137587344 -22012439 + (CA)n Simple_repeat Simple_repeat 1 57 0 2 1634 222 37 0 0 chr3 137587834 137587861 -22011922 + (CA)n Simple_repeat Simple_repeat 2 28 0 2 1634 28 29 0 0 chr3 137588174 137588209 -22011574 + AT_rich Low_complexity Low_complexity 1 35 0 2 1634 1324 77 0 118 chr3 137588493 137588714 -22011069 - B2_Mm2 SINE B2 0 195 1 2 1634 260 218 0 18 chr3 137588837 137588893 -22010890 - Lx8 LINE L1 -8 7465 7411 2 1634 379 193 24 0 chr3 137590782 137590865 -22008918 - MTE2a LTR MaLR -2 377 293 2 1634 342 191 77 22 chr3 137592472 137592563 -22007220 - RSINE1 SINE B4 -7 158 63 2 1634 4609 158 86 15 chr3 137592681 137593627 -22006156 - RLTR25B LTR ERVK 0 1028 16 2 1634 533 147 109 14 chr3 137593799 137593937 -22005846 + RLTR30 LTR ERV1 229 379 0 2 1634 377 289 43 72 chr3 137595276 137595414 -22004369 - RSINE1 SINE B4 0 165 32 2 1634 351 0 0 0 chr3 137595446 137595485 -22004298 + (TG)n Simple_repeat Simple_repeat 1 39 0 2 1634 449 231 9 36 chr3 137595492 137595604 -22004179 - B3A SINE B2 -88 110 2 2 1634 3870 118 128 42 chr3 137596628 137597324 -22002459 + RMER6A LTR ERVK 1 756 0 2 1634 279 0 0 0 chr3 137597565 137597596 -22002187 + (CA)n Simple_repeat Simple_repeat 2 32 0 2 1634 377 194 14 0 chr3 137599307 137599379 -22000404 - ID_B1 SINE B4 -22 202 130 2 1634 375 78 0 0 chr3 137600416 137600467 -21999316 + (TGAG)n Simple_repeat Simple_repeat 4 54 0 2 1634 573 275 74 15 chr3 137600977 137601180 -21998603 + B3 SINE B2 2 216 0 2 1634 23 33 0 0 chr3 137601180 137601210 -21998573 + AT_rich Low_complexity Low_complexity 1 30 0 2 1634 258 32 0 0 chr3 137601380 137601411 -21998372 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 2 1634 1309 45 61 11 chr3 137601426 137601606 -21998177 - B2_Mm2 SINE B2 -5 190 2 2 1634 520 294 13 33 chr3 137601794 137601945 -21997838 + RSINE1 SINE B4 3 150 -15 2 1634 234 241 19 0 chr3 137602024 137602078 -21997705 + G-rich Low_complexity Low_complexity 5 59 0 2 1634 21 0 0 0 chr3 137602592 137602613 -21997170 + AT_rich Low_complexity Low_complexity 1 21 0 2 1634 312 268 72 0 chr3 137602800 137602897 -21996886 + PB1D7 SINE Alu 4 107 -13 2 1634 1337 85 0 11 chr3 137603235 137603414 -21996369 + B2_Mm2 SINE B2 2 178 -17 2 1634 1452 47 0 0 chr3 137603414 137603630 -21996153 + (GAA)n Simple_repeat Simple_repeat 1 216 0 2 1634 667 295 95 13 chr3 137604315 137604375 -21995408 + MER2 DNA MER2_type 9 71 -274 2 1634 1444 68 15 35 chr3 137604375 137604574 -21995209 + B2_Mm2 SINE B2 1 195 0 2 1634 667 295 95 13 chr3 137604574 137604819 -21994964 + MER2 DNA MER2_type 72 339 -6 2 1634 937 239 19 0 chr3 137605549 137605758 -21994025 + B3 SINE B2 1 213 -3 2 1634 1535 58 21 0 chr3 137605826 137606017 -21993766 + B2_Mm2 SINE B2 1 195 0 2 1634 1211 74 0 0 chr3 137606021 137606169 -21993614 + B1_Mus1 SINE Alu 1 148 0 2 1634 426 85 0 0 chr3 137606683 137606742 -21993041 + (GGGTG)n Simple_repeat Simple_repeat 3 61 0 2 1634 660 314 95 32 chr3 137606898 137607422 -21992361 + L1MC4 LINE L1 6488 7044 -998 2 1634 288 321 23 15 chr3 137608038 137608171 -21991612 + L1MC4 LINE L1 7768 7901 -141 2 1634 363 42 0 0 chr3 137608404 137608452 -21991331 + HAL1-3A_ME LINE L1 1975 2022 -836 2 1634 330 165 0 0 chr3 137608467 137608546 -21991237 + GA-rich Low_complexity Low_complexity 2 80 0 2 1634 972 249 65 34 chr3 137610224 137610626 -21989157 + Lx7 LINE L1 7134 7690 -6 2 1634 244 350 17 40 chr3 137611122 137611295 -21988488 - B4A SINE B4 -118 174 6 2 1634 244 239 191 11 chr3 137611311 137611400 -21988383 - PB1D10 SINE Alu -10 107 3 2 1634 548 90 20 0 chr3 137612062 137612162 -21987621 + (TCTCTG)n Simple_repeat Simple_repeat 2 103 0 2 1634 528 301 44 0 chr3 137612388 137612524 -21987259 - B1F1 SINE Alu -7 142 1 2 1634 259 330 74 118 chr3 137612524 137612586 -21987197 - B4 SINE B4 -68 219 31 2 1634 261 0 0 0 chr3 137612857 137612886 -21986897 + (TG)n Simple_repeat Simple_repeat 1 29 0 2 1634 340 269 128 9 chr3 137612889 137612998 -21986785 - RSINE1 SINE B4 -36 129 8 2 1634 259 324 29 0 chr3 137613723 137613791 -21985992 - ID2 SINE ID -11 72 3 2 1634 188 345 93 73 chr3 137613867 137614031 -21985752 - L2a LINE L2 0 3426 3261 2 1634 872 82 240 0 chr3 137614031 137614177 -21985606 + B2_Mm2 SINE B2 1 181 -14 2 1634 188 345 93 73 chr3 137614177 137614312 -21985471 - L2a LINE L2 -166 3260 3121 2 1634 1130 113 36 0 chr3 137614512 137614680 -21985103 + B2_Mm1t SINE B2 6 179 -14 2 1634 261 77 135 0 chr3 137614713 137614765 -21985018 + B2_Mm2 SINE B2 137 195 0 2 1634 473 306 16 11 chr3 137615458 137615640 -21984143 - B3A SINE B2 -15 183 1 2 1634 278 216 14 0 chr3 137615673 137615747 -21984036 + CT-rich Low_complexity Low_complexity 2 76 0 2 1634 369 0 0 0 chr3 137615755 137615796 -21983987 + (TG)n Simple_repeat Simple_repeat 2 42 0 2 1634 214 139 47 0 chr3 137616221 137616264 -21983519 + G-rich Low_complexity Low_complexity 1 45 0 2 1634 912 256 14 0 chr3 137616625 137616836 -21982947 + B3 SINE B2 1 214 -2 2 1634 208 387 16 60 chr3 137617437 137617621 -21982162 - MIR SINE MIR -34 228 53 2 1634 22 56 0 0 chr3 137618131 137618167 -21981616 + AT_rich Low_complexity Low_complexity 1 36 0 2 1634 613 248 0 20 chr3 137618187 137618335 -21981448 + RSINE1 SINE B4 2 146 -19 2 1634 237 346 75 38 chr3 137618528 137618714 -21981069 + MIR SINE MIR 46 238 -24 2 1634 21 0 0 0 chr3 137619575 137619596 -21980187 + GC_rich Low_complexity Low_complexity 1 21 0 2 1634 200 239 155 95 chr3 137619614 137619762 -21980021 - L2a LINE L2 -46 3380 3224 2 1634 246 231 39 0 chr3 137620255 137620307 -21979476 - ID4 SINE ID -28 55 2 2 1634 188 35 35 0 chr3 137620322 137620351 -21979432 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 2 1634 320 273 81 0 chr3 137620356 137620455 -21979328 - PB1D10 SINE Alu -9 108 2 2 1634 264 135 18 55 chr3 137620698 137620753 -21979030 - PB1D10 SINE Alu -2 115 63 2 1634 299 260 133 8 chr3 137621310 137621438 -21978345 - B1F2 SINE Alu -5 144 1 2 1634 1415 82 0 5 chr3 137621927 137622111 -21977672 + B2_Mm2 SINE B2 1 183 -12 2 1634 1084 99 6 11 chr3 137622123 137622297 -21977486 + (GAA)n Simple_repeat Simple_repeat 3 175 0 2 1634 351 0 0 0 chr3 137623323 137623362 -21976421 + (TC)n Simple_repeat Simple_repeat 2 40 0 2 1634 201 26 48 71 chr3 137623466 137623508 -21976275 + (TTTTG)n Simple_repeat Simple_repeat 5 45 0 2 1634 1202 41 0 33 chr3 137623508 137623659 -21976124 - B1_Mus1 SINE Alu 0 148 3 2 1634 285 29 0 0 chr3 137623684 137623718 -21976065 + (TTA)n Simple_repeat Simple_repeat 2 35 0 2 1634 441 0 0 0 chr3 137623835 137623884 -21975899 + (CA)n Simple_repeat Simple_repeat 2 50 0 2 1634 360 0 0 0 chr3 137624037 137624077 -21975706 + (TTTA)n Simple_repeat Simple_repeat 4 43 0 2 1634 417 224 0 56 chr3 137624077 137624167 -21975616 - B1_Mur1 SINE Alu -19 130 46 2 1634 217 302 16 16 chr3 137624188 137624252 -21975531 + PB1D10 SINE Alu 22 85 -32 2 1634 319 296 182 0 chr3 137625090 137625222 -21974561 - MER5A DNA MER1_type -12 177 22 2 1635 846 294 15 53 chr3 137625857 137626119 -21973664 - B4A SINE B4 -4 288 37 2 1635 836 308 100 76 chr3 137626295 137626903 -21972880 + MLT1E3 LTR MaLR 1 623 -1 2 1635 541 320 221 0 chr3 137627074 137627246 -21972537 - B4 SINE B4 0 292 83 2 1635 930 96 0 0 chr3 137627250 137627385 -21972398 + (TTCC)n Simple_repeat Simple_repeat 1 135 0 2 1635 357 274 12 0 chr3 137627462 137627546 -21972237 + B4 SINE B4 3 87 -205 2 1635 183 184 0 0 chr3 137627573 137627611 -21972172 + GA-rich Low_complexity Low_complexity 5 42 0 2 1635 238 380 72 24 chr3 137628126 137628293 -21971490 + MIR3 SINE MIR 19 193 -15 2 1635 565 168 15 0 chr3 137628338 137628469 -21971314 + (TG)n Simple_repeat Simple_repeat 2 134 0 2 1635 396 0 0 0 chr3 137628469 137628513 -21971270 + (GA)n Simple_repeat Simple_repeat 1 44 0 2 1635 708 221 71 6 chr3 137628514 137628682 -21971101 - B3A SINE B2 -18 180 2 2 1635 459 323 108 78 chr3 137629189 137629495 -21970288 + MLT1B LTR MaLR 45 359 -31 2 1635 254 267 33 0 chr3 137629551 137629611 -21970172 + B4A SINE B4 2 63 -229 2 1635 472 113 0 0 chr3 137629840 137629902 -21969881 - B3 SINE B2 -154 62 1 2 1635 258 352 4 26 chr3 137629903 137630034 -21969749 - MIRb SINE MIR -88 188 57 2 1635 574 204 53 9 chr3 137630612 137630747 -21969036 + B3 SINE B2 33 187 -8 2 1635 225 0 0 0 chr3 137632603 137632628 -21967155 + (A)n Simple_repeat Simple_repeat 1 25 0 2 1635 230 136 23 0 chr3 137633327 137633371 -21966412 + CT-rich Low_complexity Low_complexity 4 48 0 3 1635 337 236 42 0 chr3 137633372 137633444 -21966339 - ID4 SINE ID -7 76 2 3 1635 189 0 0 0 chr3 137634389 137634410 -21965373 + (CAAA)n Simple_repeat Simple_repeat 4 24 0 3 1635 276 235 0 76 chr3 137634783 137634875 -21964908 - RLTR12B LTR ERVK -420 108 24 3 1635 326 301 11 0 chr3 137635023 137635116 -21964667 + PB1D10 SINE Alu 5 98 -19 3 1635 280 277 15 0 chr3 137637118 137637183 -21962600 - RSINE1 SINE B4 -97 68 3 3 1635 239 0 32 0 chr3 137638274 137638305 -21961478 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 3 1635 23 0 0 0 chr3 137638420 137638443 -21961340 + AT_rich Low_complexity Low_complexity 1 23 0 3 1635 215 300 88 0 chr3 137638850 137638930 -21960853 + MIRb SINE MIR 108 194 -74 3 1635 238 280 194 15 chr3 137639188 137639322 -21960461 + MER58B DNA MER1_type 38 195 -146 3 1635 951 35 0 0 chr3 137639473 137639588 -21960195 + (TTCC)n Simple_repeat Simple_repeat 3 117 0 3 1635 465 262 9 9 chr3 137639588 137639696 -21960087 - PB1D10 SINE Alu -8 109 2 3 1635 486 0 0 0 chr3 137639730 137639784 -21959999 + (TA)n Simple_repeat Simple_repeat 1 54 0 3 1635 993 113 0 0 chr3 137641992 137642142 -21957641 + (TC)n Simple_repeat Simple_repeat 1 150 0 3 1635 579 144 0 0 chr3 137642149 137642246 -21957537 + (TTCC)n Simple_repeat Simple_repeat 3 99 0 3 1635 564 228 216 6 chr3 137642257 137642438 -21957345 + ID_B1 SINE B4 5 223 -1 3 1635 296 48 24 0 chr3 137643160 137643202 -21956581 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 1635 299 260 0 27 chr3 137643231 137643306 -21956477 - RSINE1 SINE B4 -78 87 15 3 1635 825 204 112 17 chr3 137645022 137645221 -21954562 + ID_B1 SINE B4 24 243 -49 3 1635 954 66 0 0 chr3 137645869 137645990 -21953793 + B1_Mus1 SINE Alu 2 122 -26 3 1635 306 73 0 0 chr3 137645990 137646031 -21953752 + (TAAA)n Simple_repeat Simple_repeat 4 44 0 3 1635 912 128 21 0 chr3 137646031 137646050 -21953733 + B1_Mur4 SINE Alu 125 144 -6 3 1635 498 99 33 0 chr3 137646225 137646316 -21953467 + (TTTC)n Simple_repeat Simple_repeat 4 97 0 3 1635 210 191 0 0 chr3 137646341 137646383 -21953400 + CT-rich Low_complexity Low_complexity 3 44 0 3 1635 547 303 73 49 chr3 137646640 137646845 -21952938 - B3 SINE B2 -6 210 1 3 1635 22 0 0 0 chr3 137646858 137646880 -21952903 + AT_rich Low_complexity Low_complexity 1 22 0 3 1635 306 0 0 0 chr3 137646915 137646949 -21952834 + (TG)n Simple_repeat Simple_repeat 2 35 0 3 1635 367 248 0 6 chr3 137646975 137647072 -21952711 - ID4_ SINE ID -48 104 10 3 1635 359 327 71 59 chr3 137647092 137647261 -21952522 - B4A SINE B4 0 292 122 3 1635 334 242 10 59 chr3 137647666 137647767 -21952016 + MTEa LTR MaLR 1 96 -283 3 1635 243 0 0 0 chr3 137647767 137647794 -21951989 + (CATA)n Simple_repeat Simple_repeat 2 28 0 3 1635 3234 48 20 0 chr3 137647826 137648218 -21951565 - MTB LTR MaLR 0 400 1 3 1635 404 290 80 64 chr3 137648271 137648474 -21951309 + MLT1A0 LTR MaLR 1 198 -167 3 1635 2411 298 65 68 chr3 137648757 137650063 -21949720 - MTEa-int LTR MaLR -141 1439 22 3 1635 694 188 0 15 chr3 137650084 137650214 -21949569 - MTEa LTR MaLR 0 379 252 3 1635 567 264 103 46 chr3 137650444 137650639 -21949144 - Lx8 LINE L1 -405 7068 6863 3 1635 2011 144 14 29 chr3 137650639 137651001 -21948782 + ORR1B1 LTR MaLR 1 307 -87 3 1635 297 167 192 0 chr3 137651085 137651163 -21948620 + Lx8 LINE L1 7376 7468 -5 3 1635 701 296 7 8 chr3 137651173 137651432 -21948351 + L1MA4 LINE L1 5675 5938 -230 3 1635 1132 76 14 0 chr3 137651626 137651771 -21948012 - B1_Mm SINE Alu 0 147 1 3 1635 3647 186 46 47 chr3 137653009 137653835 -21945948 + Lx9 LINE L1 6801 7625 -19 3 1635 817 72 30 46 chr3 137654599 137654730 -21945053 - B1_Mus1 SINE Alu -1 147 19 3 1635 252 0 0 0 chr3 137655170 137655198 -21944585 + (TAA)n Simple_repeat Simple_repeat 1 28 0 3 1635 327 104 0 0 chr3 137655198 137655246 -21944537 + (GGAGAA)n Simple_repeat Simple_repeat 2 49 0 3 1635 414 0 0 0 chr3 137655900 137655946 -21943837 + (TG)n Simple_repeat Simple_repeat 2 47 0 3 1635 1083 136 17 11 chr3 137655946 137656124 -21943659 - RMER10B LTR ERVL -200 198 20 3 1635 316 262 86 66 chr3 137657527 137657678 -21942105 - MER5A1 DNA MER1_type -4 162 9 3 1635 1427 211 30 16 chr3 137657705 137658139 -21941644 - RLTR24 LTR ERV1 0 529 21 3 1635 8916 135 51 48 chr3 137658139 137658410 -21941373 - RLTR21 LTR ERVK 0 1572 1287 3 1635 297 0 0 0 chr3 137658410 137658443 -21941340 + (CA)n Simple_repeat Simple_repeat 1 33 0 3 1635 8916 135 51 48 chr3 137658443 137659739 -21940044 - RLTR21 LTR ERVK -286 1286 1 3 1635 357 82 0 0 chr3 137659992 137660041 -21939742 + (TC)n Simple_repeat Simple_repeat 1 49 0 3 1635 1211 251 138 43 chr3 137660278 137660740 -21939043 - RMER5 LTR ERV1 -2 532 27 3 1635 369 0 0 0 chr3 137660743 137660784 -21938999 + (A)n Simple_repeat Simple_repeat 1 41 0 3 1635 338 234 0 0 chr3 137661282 137661389 -21938394 + (CTAA)n Simple_repeat Simple_repeat 1 107 0 3 1635 421 269 177 0 chr3 137661426 137661567 -21938216 + MER34 LTR ERV1 12 177 -394 3 1635 463 277 135 67 chr3 137662251 137662518 -21937265 + MER34 LTR ERV1 186 470 -72 3 1635 256 307 40 0 chr3 137662860 137662935 -21936848 - ID4_ SINE ID -4 79 2 3 1635 189 0 0 0 chr3 137662935 137662956 -21936827 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 3 1635 475 244 29 29 chr3 137662963 137663102 -21936681 - B1F SINE Alu -10 139 1 3 1635 206 118 0 0 chr3 137664504 137664538 -21935245 + (T)n Simple_repeat Simple_repeat 1 34 0 3 1635 216 0 0 0 chr3 137665384 137665408 -21934375 + (TG)n Simple_repeat Simple_repeat 1 24 0 3 1635 378 57 0 0 chr3 137665410 137665463 -21934320 + (CAGAGA)n Simple_repeat Simple_repeat 2 54 0 3 1635 405 330 14 83 chr3 137666387 137666648 -21933135 + MTEb LTR MaLR 113 375 -4 3 1635 334 301 0 0 chr3 137667677 137667750 -21932033 - ID4_ SINE ID -8 75 3 3 1635 270 116 0 0 chr3 137667896 137667939 -21931844 + (TCC)n Simple_repeat Simple_repeat 1 43 0 3 1635 2366 247 104 5 chr3 137667943 137668565 -21931218 - Lx8 LINE L1 -394 7079 6396 3 1635 1032 51 73 0 chr3 137668574 137668711 -21931072 - B1_Mm SINE Alu 0 147 1 3 1635 213 172 29 59 chr3 137668787 137668855 -21930928 + (TTTA)n Simple_repeat Simple_repeat 3 68 0 3 1635 315 0 0 0 chr3 137670245 137670280 -21929503 + (TG)n Simple_repeat Simple_repeat 2 36 0 3 1635 26 0 0 0 chr3 137670628 137670654 -21929129 + AT_rich Low_complexity Low_complexity 1 26 0 3 1635 414 0 0 0 chr3 137670750 137670796 -21928987 + (TCTA)n Simple_repeat Simple_repeat 3 48 0 3 1635 579 328 30 0 chr3 137670818 137671016 -21928767 - ID_B1 SINE B4 -20 204 1 3 1635 495 48 0 0 chr3 137671812 137671874 -21927909 + (TG)n Simple_repeat Simple_repeat 1 62 0 3 1635 605 184 6 18 chr3 137671915 137672086 -21927697 + (TA)n Simple_repeat Simple_repeat 1 169 0 3 1635 246 125 0 0 chr3 137672400 137672448 -21927335 + (TTTA)n Simple_repeat Simple_repeat 1 48 0 3 1635 997 268 55 102 chr3 137672583 137672965 -21926818 - MTE2b LTR MaLR 0 379 16 3 1635 307 317 0 0 chr3 137673528 137673610 -21926173 + GA-rich Low_complexity Low_complexity 3 84 0 3 1635 2179 269 165 38 chr3 137675257 137676560 -21923223 - ORR1D2-int LTR MaLR -34 1475 1 3 1635 690 203 77 6 chr3 137676560 137676743 -21923040 - ORR1D2 LTR MaLR 0 370 175 3 1635 354 309 86 27 chr3 137676779 137676930 -21922853 - MER58A DNA MER1_type -16 208 47 3 1635 4407 65 22 48 chr3 137676930 137677533 -21922250 + LTRIS_Mus LTR ERV1 1 587 0 3 1635 354 309 86 27 chr3 137677533 137677567 -21922216 - MER58A DNA MER1_type -178 46 12 3 1635 460 206 199 37 chr3 137678525 137678686 -21921097 - RMER30 DNA MER1_type -1 201 15 3 1635 318 276 0 13 chr3 137679015 137679092 -21920691 - RSINE1 SINE B4 -87 78 3 3 1635 888 136 16 21 chr3 137679186 137679382 -21920401 - B3 SINE B2 -2 193 1 3 1635 326 344 89 63 chr3 137680396 137680666 -21919117 - B4A SINE B4 -15 277 1 3 1635 2150 162 10 42 chr3 137681000 137681386 -21918397 + ORR1D1 LTR MaLR 1 374 0 3 1635 1688 205 220 13 chr3 137681386 137681850 -21917933 + ORR1D1-int LTR MaLR 1 560 -810 3 1635 2138 249 57 10 chr3 137681874 137682386 -21917397 - Lx8 LINE L1 -358 7115 6580 3 1635 462 294 134 5 chr3 137682386 137682639 -21917144 - MLT1A0 LTR MaLR -108 300 1 3 1635 464 291 315 7 chr3 137682845 137683123 -21916660 + MTEb LTR MaLR 3 366 -13 3 1635 308 248 59 10 chr3 137683250 137683352 -21916431 - L1M5 LINE L1 -411 5829 5723 3 1635 305 288 149 7 chr3 137683494 137683648 -21916135 - L1M5 LINE L1 -659 5514 5339 3 1635 31 44 0 0 chr3 137683648 137683693 -21916090 + AT_rich Low_complexity Low_complexity 1 45 0 3 1635 436 237 182 53 chr3 137684103 137684290 -21915493 + B3 SINE B2 3 213 -3 3 1635 378 0 0 0 chr3 137684796 137684838 -21914945 + (TG)n Simple_repeat Simple_repeat 2 43 0 3 1635 419 340 63 0 chr3 137684888 137685079 -21914704 + LTR85a LTR Gypsy? 500 702 0 3 1635 292 337 10 0 chr3 137685393 137685494 -21914289 - MLT1F2 LTR MaLR -253 307 206 3 1635 319 352 29 7 chr3 137685518 137685658 -21914125 - MLT1F2 LTR MaLR -411 149 7 3 1635 474 33 0 0 chr3 137685858 137685918 -21913865 + (TG)n Simple_repeat Simple_repeat 2 61 0 3 1635 227 280 123 33 chr3 137686975 137687041 -21912742 + MLT1F LTR MaLR 362 428 -120 3 1635 2196 176 58 2 chr3 137687041 137687440 -21912343 + MTC LTR MaLR 1 421 0 3 1635 227 280 123 33 chr3 137687440 137687457 -21912326 + MLT1F LTR MaLR 429 443 -105 3 1635 3085 52 39 3 chr3 137687457 137687839 -21911944 - MTA_Mm LTR MaLR 0 396 1 3 1635 227 280 123 33 chr3 137687839 137687876 -21911907 + MLT1F LTR MaLR 444 493 -55 3 1635 347 38 0 37 chr3 137688224 137688278 -21911505 + (CAAAA)n Simple_repeat Simple_repeat 2 53 0 3 1635 1175 245 88 13 chr3 137688529 137688902 -21910881 - MTD LTR MaLR -14 405 5 3 1635 25 31 0 0 chr3 137689757 137689789 -21909994 + AT_rich Low_complexity Low_complexity 1 32 0 3 1635 347 259 85 62 chr3 137690325 137690502 -21909281 - MIR3 SINE MIR -25 183 3 3 1635 329 278 83 41 chr3 137691015 137691184 -21908599 + MIRc SINE MIR 33 208 -60 4 1635 263 154 0 15 chr3 137691327 137691393 -21908390 + CT-rich Low_complexity Low_complexity 2 66 0 4 1635 477 50 0 0 chr3 137691397 137691457 -21908326 + (TG)n Simple_repeat Simple_repeat 2 61 0 4 1635 213 361 0 14 chr3 137691457 137691530 -21908253 - ID4_ SINE ID -11 72 1 4 1635 513 239 11 97 chr3 137692857 137693033 -21906750 - RSINE1 SINE B4 0 165 5 4 1635 381 284 112 47 chr3 137693100 137693314 -21906469 + MLT1B LTR MaLR 23 250 -140 4 1635 733 234 70 11 chr3 137694000 137694186 -21905597 + ID_B1 SINE B4 2 198 -26 4 1635 270 0 0 0 chr3 137694190 137694220 -21905563 + (TCTA)n Simple_repeat Simple_repeat 3 32 0 4 1635 525 335 89 55 chr3 137695473 137695799 -21903984 - MER2 DNA MER2_type -7 338 2 4 1635 3364 28 5 15 chr3 137697531 137697931 -21901852 - MTA_Mm LTR MaLR 0 396 1 4 1635 524 115 0 9 chr3 137697957 137698062 -21901721 + (TC)n Simple_repeat Simple_repeat 1 104 0 4 1635 801 133 54 8 chr3 137698072 137698201 -21901582 - B1_Mur4 SINE Alu -15 135 1 4 1635 536 311 93 35 chr3 137698510 137698677 -21901106 - MER2 DNA MER2_type 0 345 156 4 1635 1590 32 21 0 chr3 137698677 137698864 -21900919 - B2_Mm1a SINE B2 -1 192 2 4 1635 536 311 93 35 chr3 137698864 137698953 -21900830 - MER2 DNA MER2_type -190 155 74 4 1635 598 251 40 137 chr3 137699137 137699196 -21900587 - RMER12 LTR ERVK -100 1222 1180 4 1635 2417 81 112 16 chr3 137699196 137699571 -21900212 + IAPLTR2a LTR ERVK 1 411 0 4 1635 598 251 40 137 chr3 137699571 137699760 -21900023 - RMER12 LTR ERVK -143 1179 998 4 1635 5262 69 10 6 chr3 137699789 137700475 -21899308 - L1_Mus1 LINE L1 -1 6566 5878 4 1635 269 51 0 25 chr3 137700530 137700570 -21899213 + (CA)n Simple_repeat Simple_repeat 2 40 0 4 1635 225 160 0 57 chr3 137700570 137700623 -21899160 - RMER12B LTR ERVK -202 1202 1153 4 1635 1354 211 106 89 chr3 137700784 137701583 -21898200 - RMER12 LTR ERVK -1065 783 1 4 1635 357 267 0 43 chr3 137701583 137701660 -21898123 - MLT1B LTR MaLR -58 332 260 4 1635 279 0 0 0 chr3 137701725 137701756 -21898027 + (TG)n Simple_repeat Simple_repeat 2 32 0 4 1635 2972 50 79 3 chr3 137702301 137702679 -21897104 - MTB_Mm LTR MaLR 0 407 1 4 1635 310 333 32 92 chr3 137703833 137703929 -21895854 - L1M5 LINE L1 -1506 4640 4544 4 1635 1065 139 193 6 chr3 137703929 137704110 -21895673 - B3 SINE B2 0 216 2 4 1635 310 333 32 92 chr3 137704110 137704264 -21895519 - L1M5 LINE L1 -1603 4543 4405 4 1635 750 263 55 23 chr3 137704319 137704566 -21895217 + B4 SINE B4 26 288 -4 4 1635 289 333 8 31 chr3 137704603 137704730 -21895053 - PB1 SINE Alu -2 125 2 4 1635 216 0 0 0 chr3 137704739 137704763 -21895020 + (T)n Simple_repeat Simple_repeat 1 24 0 4 1635 324 286 29 0 chr3 137706168 137706273 -21893510 - B1F SINE Alu 0 149 42 4 1635 830 270 97 57 chr3 137706273 137706442 -21893341 - MTD LTR MaLR 0 419 230 4 1635 180 0 0 0 chr3 137706442 137706462 -21893321 + (TC)n Simple_repeat Simple_repeat 2 21 0 4 1635 830 270 97 57 chr3 137706462 137706617 -21893166 - MTD LTR MaLR -190 229 70 4 1635 3015 114 2 21 chr3 137706617 137707091 -21892692 - Lx LINE L1 0 6654 6190 4 1635 830 270 97 57 chr3 137707091 137707166 -21892617 - MTD LTR MaLR -350 69 5 4 1635 256 65 43 21 chr3 137707604 137707651 -21892132 + (CAAA)n Simple_repeat Simple_repeat 2 49 0 4 1635 267 147 18 35 chr3 137707938 137708016 -21891767 + T-rich Low_complexity Low_complexity 37 112 0 4 1635 1222 42 0 0 chr3 137708016 137708160 -21891623 - B1_Mm SINE Alu -3 144 1 4 1635 267 147 18 35 chr3 137708160 137708194 -21891589 + T-rich Low_complexity Low_complexity 3 36 0 4 1635 405 0 0 0 chr3 137708200 137708245 -21891538 + (TC)n Simple_repeat Simple_repeat 2 46 0 4 1635 350 108 15 0 chr3 137708257 137708322 -21891461 + (GA)n Simple_repeat Simple_repeat 1 66 0 4 1635 664 331 34 15 chr3 137708350 137708614 -21891169 - B4A SINE B4 -22 270 2 4 1635 226 339 0 65 chr3 137708610 137708637 -21891146 + MER20 DNA MER1_type 52 78 -141 4 1635 1405 231 86 0 chr3 137708637 137708974 -21890809 - ORR1D2 LTR MaLR 0 370 5 4 1635 226 339 0 65 chr3 137708974 137709069 -21890714 + MER20 DNA MER1_type 79 166 -53 4 1635 321 253 24 37 chr3 137709370 137709452 -21890331 - ORR1E LTR MaLR -44 335 255 4 1635 406 215 212 15 chr3 137709478 137709615 -21890168 - ORR1E LTR MaLR -193 166 3 4 1635 192 338 56 14 chr3 137709803 137709947 -21889836 - MIRb SINE MIR -64 204 55 4 1635 338 214 0 45 chr3 137710301 137710389 -21889394 + L1MA9 LINE L1 5873 5956 -335 4 1635 405 270 28 35 chr3 137710429 137710571 -21889212 + ID_B1 SINE B4 81 221 -3 4 1635 345 24 0 0 chr3 137710573 137710615 -21889168 + (CA)n Simple_repeat Simple_repeat 1 42 0 4 1635 22 0 0 0 chr3 137710803 137710825 -21888958 + AT_rich Low_complexity Low_complexity 1 22 0 4 1635 387 0 0 0 chr3 137710837 137710880 -21888903 + (GAAA)n Simple_repeat Simple_repeat 4 46 0 4 1635 702 262 87 5 chr3 137710943 137711150 -21888633 + ID_B1 SINE B4 1 224 0 4 1635 266 197 155 0 chr3 137711150 137711221 -21888562 + L1MA9 LINE L1 6024 6105 -207 4 1635 639 241 101 0 chr3 137711354 137711561 -21888222 + L1MA9 LINE L1 6085 6312 0 4 1635 556 246 71 66 chr3 137711763 137711959 -21887824 - B3A SINE B2 0 198 2 4 1635 218 179 0 0 chr3 137712874 137712913 -21886870 + (CA)n Simple_repeat Simple_repeat 2 40 0 4 1635 25 0 0 0 chr3 137716807 137716832 -21882951 + AT_rich Low_complexity Low_complexity 1 25 0 4 1635 21 36 0 0 chr3 137717537 137717565 -21882218 + AT_rich Low_complexity Low_complexity 1 28 0 4 1635 614 155 0 8 chr3 137717670 137717787 -21881996 + CT-rich Low_complexity Low_complexity 1 116 0 4 1635 792 160 23 8 chr3 137717801 137717933 -21881850 - B1_Mus2 SINE Alu -9 138 5 4 1635 202 350 16 31 chr3 137718722 137718849 -21880934 - L2a LINE L2 -206 3220 3096 4 1635 269 163 0 0 chr3 137718949 137718998 -21880785 - URR1B DNA MER1_type -100 125 77 4 1635 1771 161 44 107 chr3 137722381 137722791 -21876992 + ORR1C2 LTR MaLR 1 384 0 4 1635 294 267 22 104 chr3 137725372 137725506 -21874277 + MT2B LTR ERVL 129 251 -350 4 1635 404 105 0 18 chr3 137725430 137725507 -21874276 + B1_Mus1 SINE Alu 22 96 -21 4 1635 749 156 0 39 chr3 137725507 137725687 -21874096 + GA-rich Low_complexity Low_complexity 3 175 0 4 1635 363 102 0 0 chr3 137725689 137725738 -21874045 + (GA)n Simple_repeat Simple_repeat 2 50 0 4 1635 375 298 17 9 chr3 137726307 137726422 -21873361 + MIR SINE MIR 111 226 -36 4 1635 214 62 0 99 chr3 137727413 137727484 -21872299 + T-rich Low_complexity Low_complexity 3 66 0 4 1635 204 97 0 0 chr3 137728788 137728819 -21870964 + (TCC)n Simple_repeat Simple_repeat 1 31 0 4 1635 235 170 0 19 chr3 137733910 137733964 -21865819 + A-rich Low_complexity Low_complexity 3 55 0 4 1635 1080 217 39 32 chr3 137734016 137734297 -21865486 - Lx6 LINE L1 0 7460 7178 4 1635 261 0 0 0 chr3 137734398 137734427 -21865356 + (CA)n Simple_repeat Simple_repeat 2 30 0 4 1635 423 0 0 0 chr3 137734982 137735029 -21864754 + (TG)n Simple_repeat Simple_repeat 1 47 0 4 1635 378 0 0 0 chr3 137735029 137735070 -21864713 + (GA)n Simple_repeat Simple_repeat 1 42 0 4 1635 180 0 0 0 chr3 137736059 137736079 -21863704 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 4 1635 341 251 67 67 chr3 137736467 137736572 -21863211 - ID_B1 SINE B4 -28 196 96 4 1635 534 125 22 43 chr3 137737053 137737237 -21862546 + (TG)n Simple_repeat Simple_repeat 1 180 0 4 1635 889 93 40 18 chr3 137737274 137737603 -21862180 + (TG)n Simple_repeat Simple_repeat 1 336 0 4 1635 285 116 29 14 chr3 137738783 137738853 -21860930 + CT-rich Low_complexity Low_complexity 3 73 0 4 1635 21 36 0 0 chr3 137743989 137744017 -21855766 + AT_rich Low_complexity Low_complexity 1 28 0 4 1635 404 333 0 0 chr3 137744592 137744709 -21855074 - MLT1D LTR MaLR 0 505 389 4 1635 1556 199 133 14 chr3 137745246 137745608 -21854175 - MTD LTR MaLR -14 405 1 4 1635 444 0 60 15 chr3 137745946 137746013 -21853770 + (TTTTTG)n Simple_repeat Simple_repeat 2 71 0 4 1635 749 348 92 28 chr3 137746106 137746582 -21853201 - MLT1G1 LTR MaLR 0 591 76 4 1635 201 129 0 0 chr3 137747489 137747520 -21852263 + (CAGA)n Simple_repeat Simple_repeat 4 34 0 4 1635 611 255 176 19 chr3 137747876 137748092 -21851691 - B4A SINE B4 -8 284 35 4 1635 450 53 0 0 chr3 137748097 137748154 -21851629 + (TC)n Simple_repeat Simple_repeat 2 58 0 4 1635 355 312 9 0 chr3 137748303 137748415 -21851368 - L1M5 LINE L1 -409 5715 5603 4 1635 920 262 37 23 chr3 137749199 137749414 -21850369 - ID_B1 SINE B4 -1 223 6 4 1635 1496 306 94 16 chr3 137750019 137750064 -21849719 - L1M2 LINE L1 -1114 5029 4957 4 1635 321 68 0 0 chr3 137750064 137750108 -21849675 + (TG)n Simple_repeat Simple_repeat 2 45 0 4 1635 1496 306 94 16 chr3 137750108 137750820 -21848963 - L1M2 LINE L1 -1187 4956 4214 4 1635 746 274 138 35 chr3 137750823 137751163 -21848620 + L1MB8 LINE L1 5746 6120 -58 4 1635 254 288 51 0 chr3 137751604 137751663 -21848120 + MER33 DNA MER1_type 8 69 -255 4 1635 1243 48 0 0 chr3 137751809 137751955 -21847828 + B1_Mm SINE Alu 1 146 -1 4 1635 24 0 0 0 chr3 137751956 137751980 -21847803 + AT_rich Low_complexity Low_complexity 1 24 0 4 1635 265 203 16 0 chr3 137753517 137753581 -21846202 + A-rich Low_complexity Low_complexity 1 65 0 4 1636 513 239 9 0 chr3 137756879 137756992 -21842791 + MTC-int LTR MaLR 1143 1256 -2 4 1636 743 184 78 0 chr3 137756997 137757138 -21842645 + MTC LTR MaLR 4 155 -266 4 1636 236 170 0 149 chr3 137757204 137757405 -21842378 + (CAGCT)n Simple_repeat Simple_repeat 3 173 0 4 1636 202 152 0 158 chr3 137757490 137757693 -21842090 + (CAGCT)n Simple_repeat Simple_repeat 3 173 0 4 1636 203 61 0 29 chr3 137757876 137757910 -21841873 + (TTG)n Simple_repeat Simple_repeat 1 33 0 4 1636 450 234 184 25 chr3 137758390 137758548 -21841235 + MER5A DNA MER1_type 7 189 0 4 1636 189 0 0 0 chr3 137759103 137759124 -21840659 + (T)n Simple_repeat Simple_repeat 1 21 0 4 1636 1228 35 7 0 chr3 137759134 137759278 -21840505 - B1_Mus2 SINE Alu -1 146 2 4 1636 189 74 0 0 chr3 137759575 137759602 -21840181 + (CAAA)n Simple_repeat Simple_repeat 3 29 0 4 1636 236 241 0 0 chr3 137760733 137760791 -21838992 + (CA)n Simple_repeat Simple_repeat 2 59 0 4 1636 261 128 0 0 chr3 137760791 137760838 -21838945 + (GA)n Simple_repeat Simple_repeat 2 48 0 4 1636 1481 150 248 3 chr3 137761386 137761681 -21838102 + ORR1B2 LTR MaLR 1 367 0 5 1636 279 216 132 105 chr3 137761886 137761916 -21837867 + MT2B LTR ERVL 123 155 -446 5 1636 509 204 0 0 chr3 137761916 137762004 -21837779 + B1_Mur3 SINE Alu 1 88 -61 5 1636 4359 35 2 4 chr3 137762693 137763204 -21836579 + L1Md_T LINE L1 6073 6582 0 5 1636 603 39 0 0 chr3 137763255 137763333 -21836450 + (TG)n Simple_repeat Simple_repeat 2 79 0 5 1636 546 230 44 0 chr3 137763333 137763446 -21836337 - B1_Mur2 SINE Alu -11 138 21 5 1636 243 282 14 114 chr3 137763470 137763610 -21836173 + L1VL1 LINE L1 1 126 -6296 5 1636 6871 96 52 5 chr3 137763607 137764585 -21835198 + L1_Mm LINE L1 4633 5656 -227 5 1636 3247 49 0 0 chr3 137764583 137764974 -21834809 + L1Md_F3 LINE L1 5936 6326 -258 5 1636 204 40 0 0 chr3 137764976 137765001 -21834782 + (A)n Simple_repeat Simple_repeat 1 25 0 5 1636 1051 246 29 8 chr3 137765663 137765909 -21833874 + B4A SINE B4 24 274 -18 5 1636 188 306 0 16 chr3 137766534 137766597 -21833186 - MIR SINE MIR -174 88 27 5 1636 477 0 0 0 chr3 137767371 137767424 -21832359 + (TG)n Simple_repeat Simple_repeat 2 54 0 5 1636 306 0 0 0 chr3 137767461 137767495 -21832288 + (TCTA)n Simple_repeat Simple_repeat 1 34 0 5 1636 180 111 0 0 chr3 137767502 137767529 -21832254 + (TATATG)n Simple_repeat Simple_repeat 3 29 0 5 1636 356 308 169 4 chr3 137768736 137768961 -21830822 + L3 LINE CR1 4139 4400 -89 5 1636 202 241 57 29 chr3 137769296 137769471 -21830312 + (CTCTG)n Simple_repeat Simple_repeat 1 180 0 5 1636 216 0 0 0 chr3 137769803 137769827 -21829956 + (TA)n Simple_repeat Simple_repeat 2 25 0 5 1636 436 361 35 7 chr3 137770328 137770473 -21829310 + RSINE1 SINE B4 1 149 -16 5 1636 1106 82 0 20 chr3 137770541 137770691 -21829092 + B1_Mus1 SINE Alu 2 148 0 5 1636 208 240 0 0 chr3 137770691 137770726 -21829057 + A-rich Low_complexity Low_complexity 1 35 0 5 1636 545 42 14 0 chr3 137770726 137770798 -21828985 + (GA)n Simple_repeat Simple_repeat 2 74 0 5 1636 208 240 0 0 chr3 137770798 137770812 -21828971 + A-rich Low_complexity Low_complexity 36 49 0 5 1636 1219 48 7 0 chr3 137771143 137771289 -21828494 - B1_Mm SINE Alu 0 147 1 5 1636 270 0 0 0 chr3 137771792 137771822 -21827961 + (TAAAA)n Simple_repeat Simple_repeat 3 32 0 5 1636 256 338 14 0 chr3 137772649 137772720 -21827063 - MER2B DNA MER2_type -257 79 8 5 1636 194 341 11 105 chr3 137772753 137772848 -21826935 + L2c LINE L2 3283 3368 -19 5 1636 488 221 52 107 chr3 137773402 137773635 -21826148 + L1MA6 LINE L1 6072 6291 0 5 1636 249 33 0 0 chr3 137775646 137775676 -21824107 + (CA)n Simple_repeat Simple_repeat 2 31 0 5 1636 269 263 38 104 chr3 137776286 137776392 -21823391 + MT2B2 LTR ERVL 159 257 -327 5 1636 636 248 0 42 chr3 137776299 137776442 -21823341 + B1F SINE Alu 12 148 -1 5 1636 834 222 25 0 chr3 137776723 137776921 -21822862 + B3 SINE B2 2 204 -12 5 1636 190 267 30 91 chr3 137777362 137777461 -21822322 + MER5A DNA MER1_type 79 171 -18 5 1636 479 180 9 0 chr3 137777947 137778058 -21821725 + GA-rich Low_complexity Low_complexity 2 113 0 5 1636 351 0 0 0 chr3 137778834 137778873 -21820910 + (CA)n Simple_repeat Simple_repeat 1 39 0 5 1636 290 286 26 0 chr3 137780740 137780817 -21818966 - ID4_ SINE ID -4 79 1 5 1636 22 0 0 0 chr3 137780817 137780839 -21818944 + AT_rich Low_complexity Low_complexity 1 22 0 5 1636 456 330 30 35 chr3 137780912 137781113 -21818670 - B4A SINE B4 -10 282 83 5 1636 513 0 0 0 chr3 137784733 137784790 -21814993 + (TG)n Simple_repeat Simple_repeat 2 58 0 5 1636 182 346 19 9 chr3 137785067 137785172 -21814611 + MIRc SINE MIR 48 153 -115 5 1636 387 0 0 0 chr3 137786480 137786523 -21813260 + (GA)n Simple_repeat Simple_repeat 1 43 0 5 1636 680 225 89 0 chr3 137788603 137788772 -21811011 - B3 SINE B2 -10 206 23 5 1636 22 0 0 0 chr3 137788799 137788821 -21810962 + AT_rich Low_complexity Low_complexity 1 22 0 5 1636 555 262 8 0 chr3 137788943 137789069 -21810714 + B1F SINE Alu 5 131 -18 5 1636 378 0 0 0 chr3 137789104 137789146 -21810637 + (TAAA)n Simple_repeat Simple_repeat 2 43 0 5 1636 222 235 0 0 chr3 137789149 137789200 -21810583 + B1F SINE Alu 87 137 -12 5 1636 252 86 0 0 chr3 137789200 137789235 -21810548 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 5 1636 23 0 0 0 chr3 137789260 137789283 -21810500 + AT_rich Low_complexity Low_complexity 1 23 0 5 1636 290 26 26 0 chr3 137789427 137789466 -21810317 + (CAAA)n Simple_repeat Simple_repeat 1 40 0 5 1636 542 185 0 0 chr3 137789726 137789818 -21809965 + B1_Mur2 SINE Alu 1 92 -57 5 1636 245 281 20 20 chr3 137789945 137790043 -21809740 - PB1D10 SINE Alu -19 98 1 5 1636 216 306 100 43 chr3 137790044 137790184 -21809599 - MIR SINE MIR -96 166 19 5 1636 1516 28 16 16 chr3 137791229 137791411 -21808372 - B2_Mm2 SINE B2 -9 186 5 5 1636 1254 54 0 0 chr3 137791433 137791581 -21808202 - B1_Mus1 SINE Alu 0 148 1 5 1636 227 304 31 39 chr3 137792153 137792283 -21807500 + Arthur1B DNA Tip100 19 147 -1078 5 1636 504 234 0 0 chr3 137792429 137792570 -21807213 + (TG)n Simple_repeat Simple_repeat 1 141 0 5 1636 1158 42 21 0 chr3 137792806 137792949 -21806834 - B1_Mm SINE Alu 0 147 2 5 1636 423 0 0 0 chr3 137793094 137793141 -21806642 + (CA)n Simple_repeat Simple_repeat 1 47 0 5 1636 309 109 0 0 chr3 137793145 137793191 -21806592 + (GA)n Simple_repeat Simple_repeat 1 46 0 5 1636 207 0 0 0 chr3 137794125 137794148 -21805635 + (CA)n Simple_repeat Simple_repeat 2 24 0 5 1636 279 0 0 0 chr3 137794148 137794178 -21805605 + (GA)n Simple_repeat Simple_repeat 2 32 0 5 1636 1181 56 0 0 chr3 137794495 137794639 -21805144 + B1_Mus1 SINE Alu 5 148 0 5 1636 734 124 8 0 chr3 137795247 137795368 -21804415 + (TTTC)n Simple_repeat Simple_repeat 2 123 0 5 1636 1182 68 0 0 chr3 137795372 137795519 -21804264 - B1_Mus1 SINE Alu 0 148 2 5 1636 231 36 0 0 chr3 137796080 137796108 -21803675 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 5 1636 423 247 18 1 chr3 137796241 137796363 -21803420 - B1_Mur1 SINE Alu -22 128 6 5 1636 989 92 0 0 chr3 137797149 137797280 -21802503 + B1_Mus1 SINE Alu 1 131 -17 5 1636 333 0 0 0 chr3 137797280 137797317 -21802466 + (GA)n Simple_repeat Simple_repeat 2 38 0 5 1636 708 123 0 0 chr3 137797858 137797972 -21801811 + (GGAA)n Simple_repeat Simple_repeat 4 117 0 5 1636 31 44 0 0 chr3 137798421 137798466 -21801317 + AT_rich Low_complexity Low_complexity 1 45 0 5 1636 21 36 0 0 chr3 137798554 137798582 -21801201 + AT_rich Low_complexity Low_complexity 1 28 0 5 1636 618 169 16 33 chr3 137798977 137799160 -21800623 + GA-rich Low_complexity Low_complexity 1 180 0 5 1636 869 159 0 0 chr3 137799330 137799481 -21800302 + URR1A DNA MER1_type 76 226 0 5 1636 701 187 0 14 chr3 137799673 137799814 -21799969 + B1_Mur1 SINE Alu 6 144 -5 5 1636 1155 105 5 70 chr3 137800132 137800317 -21799466 + B2_Mm1t SINE B2 2 174 -19 5 1636 317 308 82 13 chr3 137800517 137800675 -21799108 - L1MC3 LINE L1 -33 7752 7584 5 1636 566 235 26 35 chr3 137800676 137800864 -21798919 - B3 SINE B2 -3 190 2 5 1636 413 267 194 63 chr3 137800876 137801155 -21798628 - L1MC3 LINE L1 -205 7580 7242 5 1636 1828 130 225 6 chr3 137801155 137801510 -21798273 + RLTR10C LTR ERVK 1 433 -3 5 1636 413 267 194 63 chr3 137801510 137801782 -21798001 - L1MC3 LINE L1 -544 7241 6957 5 1636 578 235 23 0 chr3 137801887 137802019 -21797764 + B4A SINE B4 133 267 -25 5 1636 587 81 12 0 chr3 137802023 137802109 -21797674 + (CA)n Simple_repeat Simple_repeat 2 88 0 5 1636 2040 213 63 30 chr3 137802459 137802963 -21796820 + RMER1B Other Other 2 522 -544 5 1636 1341 27 0 0 chr3 137802961 137803111 -21796672 + L1Md_F2 LINE L1 5436 5585 -298 5 1636 8504 28 6 2 chr3 137803112 137804104 -21795679 + L1Md_F2 LINE L1 5587 6582 0 5 1636 259 335 13 32 chr3 137804339 137804496 -21795287 - L1MA9 LINE L1 -38 6274 6121 5 1636 180 0 0 0 chr3 137807165 137807185 -21792598 + (A)n Simple_repeat Simple_repeat 1 20 0 5 1636 195 69 0 0 chr3 137807284 137807313 -21792470 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 5 1636 462 207 128 16 chr3 137809684 137809886 -21789897 - MTD LTR MaLR -5 414 154 5 1636 248 262 44 88 chr3 137811690 137811803 -21787980 + MT2B2 LTR ERVL 142 249 -335 5 1636 491 275 29 14 chr3 137811717 137811857 -21787926 + B1F1 SINE Alu 7 148 -1 5 1636 760 213 45 11 chr3 137811868 137812044 -21787739 + B3 SINE B2 3 184 -32 5 1636 228 35 0 0 chr3 137812045 137812074 -21787709 + (CA)n Simple_repeat Simple_repeat 2 30 0 5 1636 230 324 90 45 chr3 137815359 137815595 -21784188 - MIR SINE MIR -16 252 2 5 1636 692 178 22 7 chr3 137815655 137815788 -21783995 - B3 SINE B2 -6 210 76 5 1636 395 234 153 7 chr3 137815788 137816021 -21783762 - RLTR10A LTR ERVK 0 411 140 5 1636 25 0 0 0 chr3 137816455 137816480 -21783303 + AT_rich Low_complexity Low_complexity 1 25 0 5 1636 49 18 0 0 chr3 137818091 137818147 -21781636 + AT_rich Low_complexity Low_complexity 1 56 0 5 1636 370 269 18 46 chr3 137818557 137818666 -21781117 - PB1D9 SINE Alu -6 114 9 5 1636 239 296 41 17 chr3 137818687 137818793 -21780990 + PB1D7 SINE Alu 17 117 0 5 1636 1101 195 9 0 chr3 137818842 137819052 -21780731 - B3 SINE B2 0 216 5 5 1636 964 262 35 81 chr3 137821256 137821389 -21778394 + ORR1E LTR MaLR 7 143 -216 5 1636 959 82 31 6 chr3 137821389 137821548 -21778235 + (TTTC)n Simple_repeat Simple_repeat 2 164 0 5 1636 1126 64 0 0 chr3 137821550 137821690 -21778093 - B1_Mus1 SINE Alu -6 142 3 6 1636 964 262 35 81 chr3 137821690 137821923 -21777860 + ORR1E LTR MaLR 144 358 -1 5 1636 382 299 23 16 chr3 137822017 137822146 -21777637 - MLT1B LTR MaLR -2 388 259 6 1636 467 289 37 132 chr3 137823356 137823599 -21776184 + B4A SINE B4 1 220 -72 6 1636 785 195 211 26 chr3 137823744 137823976 -21775807 - RMER20B LTR ERVK -281 346 72 6 1636 381 169 28 14 chr3 137823976 137824048 -21775735 - MERVK26-int LTR ERVK -80 6839 6767 6 1636 437 278 140 10 chr3 137824445 137824638 -21775145 - MERVK26-int LTR ERVK -6551 368 151 6 1636 1619 225 35 60 chr3 137824795 137825110 -21774673 - RMER20B LTR ERVK 0 516 217 6 1636 1344 36 6 0 chr3 137825110 137825275 -21774508 - L1Md_A LINE L1 0 6582 6417 6 1636 1619 206 33 48 chr3 137825275 137825496 -21774287 - RMER20B LTR ERVK -411 216 1 6 1636 1387 182 66 26 chr3 137825626 137826004 -21773779 - RMER17C LTR ERVK 0 410 18 6 1636 703 166 35 6 chr3 137826023 137826193 -21773590 + CT-rich Low_complexity Low_complexity 1 175 0 6 1636 203 136 50 17 chr3 137826220 137826280 -21773503 + CT-rich Low_complexity Low_complexity 1 62 0 6 1636 834 178 76 41 chr3 137826281 137826597 -21773186 + RMER17C LTR ERVK 84 410 0 6 1636 207 0 0 0 chr3 137826725 137826748 -21773035 + (CA)n Simple_repeat Simple_repeat 2 24 0 6 1636 539 241 8 8 chr3 137829239 137829356 -21770427 - PB1D10 SINE Alu 0 117 1 6 1636 22 35 0 0 chr3 137829483 137829512 -21770271 + AT_rich Low_complexity Low_complexity 1 29 0 6 1636 253 208 38 89 chr3 137829612 137829691 -21770092 + B3A SINE B2 1 75 -123 6 1636 29567 56 3 4 chr3 137829697 137834644 -21765139 + L1Md_F3 LINE L1 659 5585 -298 6 1636 8322 44 2 4 chr3 137834645 137835645 -21764138 + L1Md_F3 LINE L1 5587 6584 0 6 1636 634 176 14 51 chr3 137835655 137835777 -21764006 + B3A SINE B2 43 160 -38 6 1636 246 81 0 0 chr3 137835777 137835814 -21763969 + (TG)n Simple_repeat Simple_repeat 1 37 0 6 1636 634 176 14 51 chr3 137835814 137835829 -21763954 + B3A SINE B2 161 175 -23 6 1636 597 92 0 0 chr3 137835836 137835923 -21763860 - ORR1A1-int LTR MaLR -1876 87 1 6 1636 1243 53 47 0 chr3 137835923 137836094 -21763689 - ORR1A1 LTR MaLR 0 346 168 6 1636 202 268 0 0 chr3 137836808 137836864 -21762919 + (CA)n Simple_repeat Simple_repeat 1 56 0 6 1636 319 195 0 61 chr3 137837033 137837115 -21762668 + MER5A DNA MER1_type 7 83 -106 6 1636 266 312 377 0 chr3 137838347 137838653 -21761130 - L1MEf LINE L1 -4742 1458 1036 6 1636 257 221 26 0 chr3 137839291 137839368 -21760415 + (CGTG)n Simple_repeat Simple_repeat 1 79 0 6 1636 21 36 0 0 chr3 137839657 137839685 -21760098 + AT_rich Low_complexity Low_complexity 1 28 0 6 1636 351 0 0 0 chr3 137839698 137839737 -21760046 + (TG)n Simple_repeat Simple_repeat 2 40 0 6 1636 302 263 246 0 chr3 137839762 137839876 -21759907 - RSINE1 SINE B4 -20 145 4 6 1636 1219 227 144 14 chr3 137840300 137840653 -21759130 + MTB_Mm LTR MaLR 9 407 0 6 1636 269 282 42 122 chr3 137840715 137840953 -21758830 + L1M5 LINE L1 3332 3550 -2596 6 1636 238 258 15 0 chr3 137841134 137841200 -21758583 + L1M5 LINE L1 3805 3871 -2275 6 1636 265 325 91 5 chr3 137841419 137841617 -21758166 + L1M5 LINE L1 5127 5341 -805 6 1636 1245 94 28 0 chr3 137842705 137842886 -21756897 + B2_Mm2 SINE B2 2 187 -8 6 1636 412 271 61 77 chr3 137843652 137843848 -21755935 + MTE2a LTR MaLR 18 210 -211 6 1636 3948 106 141 2 chr3 137843848 137844488 -21755295 - L1_Mur1 LINE L1 -1094 4792 4064 6 1636 1440 72 87 5 chr3 137844496 137844704 -21755079 - Lx3C LINE L1 -566 6410 6186 6 1636 2038 126 43 43 chr3 137844708 137845057 -21754726 + Lx3C LINE L1 6617 6965 -11 6 1636 260 195 59 35 chr3 137845075 137845160 -21754623 + MTE2a LTR MaLR 177 263 -116 6 1636 484 233 122 14 chr3 137845160 137845308 -21754475 + MTE2a LTR MaLR 216 379 0 6 1636 935 147 85 20 chr3 137845363 137845564 -21754219 + B3 SINE B2 3 216 0 6 1636 307 290 27 68 chr3 137845585 137845733 -21754050 + MTE2a-int LTR MaLR 16 157 -1213 6 1636 365 276 259 52 chr3 137845978 137846268 -21753515 - MTEa LTR MaLR -4 375 26 6 1636 502 203 81 50 chr3 137847888 137848049 -21751734 - MTD LTR MaLR 0 419 254 6 1636 250 299 0 25 chr3 137850413 137850492 -21749291 + GA-rich Low_complexity Low_complexity 3 79 0 6 1636 540 45 0 0 chr3 137850528 137850595 -21749188 + (TA)n Simple_repeat Simple_repeat 1 67 0 6 1636 510 135 0 22 chr3 137850641 137850732 -21749051 + MT2A LTR ERVL 1 89 -444 6 1636 264 220 0 0 chr3 137850762 137850812 -21748971 + MT2A LTR ERVL 82 131 -402 6 1636 346 191 7 213 chr3 137850806 137850972 -21748811 + MT2A LTR ERVL 348 543 -41 6 1636 183 150 50 0 chr3 137850972 137851032 -21748751 + (TAGA)n Simple_repeat Simple_repeat 3 65 0 6 1636 288 93 0 0 chr3 137851033 137851076 -21748707 + MT2A LTR ERVL 538 580 -4 6 1636 1375 228 27 103 chr3 137851980 137852425 -21747358 - MTD LTR MaLR -8 411 1 6 1636 266 157 0 19 chr3 137852470 137852522 -21747261 - ERVL-B4-int LTR ERVL -1209 4505 4455 6 1636 389 283 80 0 chr3 137852532 137852670 -21747113 + MTD LTR MaLR 269 417 -2 6 1636 354 226 98 0 chr3 137852851 137852953 -21746830 - PB1D10 SINE Alu 0 117 6 6 1636 743 278 42 99 chr3 137853539 137853851 -21745932 + MLT1A0 LTR MaLR 69 362 -3 6 1636 949 195 55 10 chr3 137854246 137854448 -21745335 - B3 SINE B2 -4 212 2 6 1636 285 95 0 45 chr3 137855171 137855237 -21744546 + (TTTA)n Simple_repeat Simple_repeat 4 66 0 6 1636 629 276 34 10 chr3 137855415 137855600 -21744183 + B3 SINE B2 4 193 -23 6 1636 345 47 0 0 chr3 137855600 137855643 -21744140 + (TG)n Simple_repeat Simple_repeat 2 44 0 6 1636 629 276 34 10 chr3 137855643 137855662 -21744121 + B3 SINE B2 194 212 -4 6 1636 201 217 28 42 chr3 137857146 137857218 -21742565 + GA-rich Low_complexity Low_complexity 6 76 0 6 1636 321 284 189 0 chr3 137857342 137857437 -21742346 + PB1D7 SINE Alu 1 113 -7 6 1636 1047 99 0 0 chr3 137857811 137857952 -21741831 + B1_Mus1 SINE Alu 2 142 -6 6 1636 191 36 0 35 chr3 137857953 137857982 -21741801 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 6 1636 1990 151 44 14 chr3 137858018 137858158 -21741625 - RLTR14 LTR ERV1 0 382 243 6 1636 653 0 13 0 chr3 137858158 137858235 -21741548 + (CA)n Simple_repeat Simple_repeat 1 78 0 6 1636 1990 151 44 14 chr3 137858235 137858456 -21741327 - RLTR14 LTR ERV1 -140 242 11 6 1636 450 267 93 36 chr3 137859349 137859489 -21740294 - B1F2 SINE Alu -1 148 1 6 1636 1114 62 7 0 chr3 137859608 137859752 -21740031 - B1_Mus1 SINE Alu -2 146 2 6 1636 218 195 0 0 chr3 137859760 137859801 -21739982 + (TTCTG)n Simple_repeat Simple_repeat 4 44 0 6 1636 771 245 47 14 chr3 137860375 137860590 -21739193 + B4A SINE B4 2 223 -69 6 1636 372 164 0 0 chr3 137861037 137861098 -21738685 + B4A SINE B4 217 277 -15 6 1636 2905 85 0 0 chr3 137862149 137862547 -21737236 - L1_Mus4 LINE L1 -4 6632 6235 6 1636 258 105 0 0 chr3 137863078 137863116 -21736667 + (T)n Simple_repeat Simple_repeat 1 38 0 6 1636 14376 20 3 1 chr3 137863249 137865564 -21734219 - L1Md_A LINE L1 0 6582 4262 6 1636 189 0 0 0 chr3 137866156 137866177 -21733606 + (CAAAA)n Simple_repeat Simple_repeat 3 23 0 6 1636 247 224 0 0 chr3 137866302 137866351 -21733432 + PB1D10 SINE Alu 29 77 -40 6 1636 1191 184 86 9 chr3 137866824 137867197 -21732586 + RLTR20A2 LTR ERVK 1 488 -90 6 1636 213 39 0 0 chr3 137867197 137867223 -21732560 + (TG)n Simple_repeat Simple_repeat 2 27 0 6 1636 1191 224 46 7 chr3 137867223 137867312 -21732471 + RLTR20A2 LTR ERVK 489 577 -1 6 1636 528 16 0 0 chr3 137867655 137867716 -21732067 + (CA)n Simple_repeat Simple_repeat 2 62 0 6 1636 296 364 59 29 chr3 137867958 137868128 -21731655 - MIRb SINE MIR -3 265 91 6 1636 3151 23 2 79 chr3 137868725 137869145 -21730638 + RLTR10 LTR ERVK 1 388 -2 6 1636 17006 24 7 4 chr3 137869157 137871094 -21728689 + RLTR10-int LTR ERVK 41 1984 -3 6 1636 267 53 0 0 chr3 137871096 137871134 -21728649 + RLTR10 LTR ERVK 353 390 0 6 1636 243 0 0 0 chr3 137871675 137871702 -21728081 + (TTCA)n Simple_repeat Simple_repeat 1 27 0 6 1636 303 335 87 44 chr3 137872313 137872519 -21727264 + B4A SINE B4 1 215 -77 6 1636 3538 151 105 57 chr3 137872508 137873301 -21726482 - RMER13B LTR ERVK -77 831 1 6 1636 275 284 109 38 chr3 137874456 137874639 -21725144 - RMER2 LTR ERV1 -4 563 368 6 1636 220 200 0 43 chr3 137876877 137876924 -21722859 - PB1D9 SINE Alu -75 45 1 6 1636 3752 129 110 2 chr3 137877126 137877737 -21722046 + RLTR33 LTR ERVK 1 677 -1 6 1636 767 293 80 21 chr3 137877737 137878312 -21721471 - L1M2 LINE L1 -2389 3754 3146 6 1636 315 267 29 29 chr3 137878877 137878981 -21720802 - Lx8 LINE L1 -2 7471 7368 6 1636 181 317 142 0 chr3 137881817 137881937 -21717846 - L3 LINE CR1 -19 4470 4334 6 1636 672 264 139 40 chr3 137882149 137882473 -21717310 - MLT1B LTR MaLR -5 385 30 6 1636 1135 96 17 22 chr3 137882664 137882845 -21716938 - B2_Mm2 SINE B2 0 195 16 6 1636 323 176 37 86 chr3 137883452 137883533 -21716250 + B1F SINE Alu 18 94 -55 6 1636 276 170 0 0 chr3 137883827 137883880 -21715903 + (TG)n Simple_repeat Simple_repeat 2 54 0 6 1636 264 77 0 0 chr3 137883959 137883998 -21715785 + (TCTCCC)n Simple_repeat Simple_repeat 3 41 0 6 1636 225 265 80 64 chr3 137884431 137884556 -21715227 + MIR3 SINE MIR 60 186 -22 6 1636 569 206 220 39 chr3 137884877 137885059 -21714724 - B3 SINE B2 0 216 2 6 1636 356 118 15 0 chr3 137885286 137885354 -21714429 + (TATG)n Simple_repeat Simple_repeat 4 72 0 6 1636 218 354 0 0 chr3 137885360 137885425 -21714358 - ID4 SINE ID -15 68 4 6 1636 466 289 14 7 chr3 137885439 137885582 -21714201 - B1F1 SINE Alu -5 144 1 6 1636 1380 66 21 21 chr3 137886234 137886420 -21713363 - B2_Mm2 SINE B2 -9 186 1 6 1636 508 155 134 0 chr3 137886536 137886633 -21713150 - B1F SINE Alu -34 115 6 6 1636 471 314 14 140 chr3 137887336 137887576 -21712207 - MLT1B LTR MaLR 0 390 180 6 204 1837 141 68 28 chr3 137887576 137887970 -21711813 + RMER17C LTR ERVK 1 410 0 6 1637 471 314 14 140 chr3 137887970 137888022 -21711761 - MLT1B LTR MaLR -211 179 135 6 1637 251 333 49 0 chr3 137888429 137888531 -21711252 - MLT1B LTR MaLR -268 122 16 6 1637 660 248 13 7 chr3 137889541 137889691 -21710092 + RSINE1 SINE B4 1 151 -14 6 1637 185 319 84 93 chr3 137891341 137891663 -21708120 - L2 LINE L2 -1382 2037 1719 6 1637 186 43 0 0 chr3 137892013 137892036 -21707747 + (TTC)n Simple_repeat Simple_repeat 2 24 0 6 1637 2386 109 35 24 chr3 137892039 137892416 -21707367 - Lx LINE L1 -12 6642 6262 6 1637 25 0 0 0 chr3 137893667 137893692 -21706091 + AT_rich Low_complexity Low_complexity 1 25 0 6 1637 342 0 0 0 chr3 137894068 137894106 -21705677 + (CA)n Simple_repeat Simple_repeat 1 38 0 6 1637 233 312 0 45 chr3 137894982 137895049 -21704734 - B1F SINE Alu -17 132 69 6 1637 362 292 9 24 chr3 137895309 137895466 -21704317 + L1M2 LINE L1 3583 3740 -2403 6 1637 583 256 49 24 chr3 137895466 137895630 -21704153 + B3A SINE B2 1 168 -30 7 1637 29 0 0 0 chr3 137895643 137895672 -21704111 + AT_rich Low_complexity Low_complexity 1 29 0 7 1637 2880 215 21 21 chr3 137895738 137896413 -21703370 - L1_Mur3 LINE L1 -581 5299 4625 7 1637 423 224 0 0 chr3 137896413 137896556 -21703227 + (TG)n Simple_repeat Simple_repeat 1 143 0 7 1637 252 238 0 0 chr3 137896585 137896669 -21703114 + (TG)n Simple_repeat Simple_repeat 2 85 0 7 1637 1232 182 133 54 chr3 137896682 137897036 -21702747 - L1_Mur3 LINE L1 -1251 4629 4248 7 1637 5356 276 46 19 chr3 137897037 137898989 -21700794 + Lx7 LINE L1 5312 7301 -395 7 1637 336 24 0 0 chr3 137899013 137899054 -21700729 + (TG)n Simple_repeat Simple_repeat 2 42 0 7 1637 228 288 0 17 chr3 137899266 137899326 -21700457 + Lx8 LINE L1 7180 7238 -235 7 1637 247 267 39 39 chr3 137900573 137900651 -21699132 - B4 SINE B4 -175 117 40 7 1637 234 125 0 40 chr3 137900688 137900738 -21699045 + (CAA)n Simple_repeat Simple_repeat 2 49 0 7 1637 216 0 0 0 chr3 137901535 137901559 -21698224 + (TTCA)n Simple_repeat Simple_repeat 1 24 0 7 1637 527 220 144 62 chr3 137902203 137902397 -21697386 + B3 SINE B2 1 210 -6 7 1637 306 240 13 26 chr3 137902672 137902749 -21697034 - ID_B1 SINE B4 -11 213 138 7 1637 504 0 0 0 chr3 137903671 137903727 -21696056 + (TG)n Simple_repeat Simple_repeat 1 56 0 7 1637 540 0 0 0 chr3 137903769 137903829 -21695954 + (TC)n Simple_repeat Simple_repeat 1 60 0 7 1637 486 0 0 0 chr3 137903829 137903882 -21695901 + (CA)n Simple_repeat Simple_repeat 1 54 0 7 1637 216 0 0 0 chr3 137904244 137904268 -21695515 + (A)n Simple_repeat Simple_repeat 1 24 0 7 1637 209 73 0 68 chr3 137904952 137904996 -21694787 + (CAAAA)n Simple_repeat Simple_repeat 2 42 0 7 1637 680 325 37 4 chr3 137905485 137905757 -21694026 - B4A SINE B4 0 292 12 7 1637 246 177 61 37 chr3 137907086 137907168 -21692615 + RMER17C LTR ERVK 327 410 0 7 1637 985 195 181 55 chr3 137907168 137907494 -21692289 + RMER17C-int LTR ERVK 1 367 -2871 7 1637 553 184 123 34 chr3 137908061 137908207 -21691576 + RMER17C-int LTR ERVK 1513 1671 -1567 7 1637 771 139 155 18 chr3 137908237 137908405 -21691378 + RMER17C-int LTR ERVK 1800 1990 -1248 7 1637 989 143 30 0 chr3 137908408 137908576 -21691207 + RMER17C-int LTR ERVK 2170 2342 -896 7 1637 2404 115 192 25 chr3 137908574 137909179 -21690604 + RMER17C-int LTR ERVK 2533 3238 0 7 1637 1669 184 64 10 chr3 137909179 137909568 -21690215 + RMER17C LTR ERVK 1 410 0 7 1637 367 271 72 24 chr3 137909856 137909981 -21689802 - B1F1 SINE Alu -16 133 3 7 1637 824 277 84 36 chr3 137910094 137910427 -21689356 + MLT1A0 LTR MaLR 1 349 -16 7 1637 1083 122 0 0 chr3 137910575 137910723 -21689060 - B1_Mus1 SINE Alu 0 148 1 7 1637 2550 186 82 13 chr3 137912713 137913289 -21686494 - Lx9 LINE L1 -10 7634 6875 7 1637 225 279 15 0 chr3 137913397 137913465 -21686318 - L1M3 LINE L1 -997 5143 5075 7 1637 701 219 12 30 chr3 137913466 137913631 -21686152 + RSINE1 SINE B4 4 165 0 7 1637 504 0 0 0 chr3 137913702 137913758 -21686025 + (TA)n Simple_repeat Simple_repeat 1 56 0 7 1637 21 36 0 0 chr3 137914800 137914828 -21684955 + AT_rich Low_complexity Low_complexity 1 28 0 7 1637 260 304 0 0 chr3 137915094 137915163 -21684620 + (TG)n Simple_repeat Simple_repeat 1 69 0 7 1637 650 259 31 36 chr3 137915203 137915427 -21684356 - L1M3 LINE L1 -1374 4766 4544 7 1637 48 32 0 0 chr3 137916745 137916807 -21682976 + AT_rich Low_complexity Low_complexity 1 62 0 7 1637 263 335 53 0 chr3 137916829 137916981 -21682802 - MER5A1 DNA MER1_type -3 163 4 7 1637 299 92 11 65 chr3 137918054 137918147 -21681636 + (TTTG)n Simple_repeat Simple_repeat 1 88 0 7 1637 631 209 27 8 chr3 137918147 137918285 -21681498 - B1_Mur4 SINE Alu -1 149 1 7 1637 180 127 18 35 chr3 137918285 137918342 -21681441 + T-rich Low_complexity Low_complexity 4 59 0 7 1637 1499 197 92 14 chr3 137918358 137918710 -21681073 + MTD LTR MaLR 12 391 -28 7 1637 249 33 0 0 chr3 137918710 137918740 -21681043 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 7 1637 1499 197 92 14 chr3 137918740 137918758 -21681025 + MTD LTR MaLR 392 410 -9 7 1637 244 259 35 0 chr3 137919662 137919720 -21680063 + CT-rich Low_complexity Low_complexity 3 62 0 7 1637 360 176 0 0 chr3 137920248 137920316 -21679467 + T-rich Low_complexity Low_complexity 1 68 0 7 1637 2809 197 139 2 chr3 137920405 137921046 -21678737 - Lx2B LINE L1 -474 6526 5798 7 1637 1043 194 78 62 chr3 137921045 137921303 -21678480 + Lx4B LINE L1 6490 6751 -307 7 1637 5157 136 21 6 chr3 137921308 137922162 -21677621 - L1_Mur2 LINE L1 -1682 4195 3329 7 1637 7229 112 58 1 chr3 137922160 137923672 -21676111 + Lx LINE L1 5084 6654 0 7 1637 327 49 0 0 chr3 137926295 137926336 -21673447 + (TG)n Simple_repeat Simple_repeat 2 42 0 7 1637 355 173 12 12 chr3 137926833 137926915 -21672868 + G-rich Low_complexity Low_complexity 6 87 0 7 1637 210 37 0 0 chr3 137926986 137927013 -21672770 + (TTTTG)n Simple_repeat Simple_repeat 1 27 0 7 1637 465 19 0 0 chr3 137927342 137927396 -21672387 + (TG)n Simple_repeat Simple_repeat 1 54 0 7 1637 242 106 21 0 chr3 137927492 137927539 -21672244 + (TA)n Simple_repeat Simple_repeat 2 49 0 7 1637 344 307 6 44 chr3 137927594 137927754 -21672029 - L1MCc LINE L1 -512 6462 6309 7 1637 405 318 121 38 chr3 137927983 137928468 -21671315 - L1MCc LINE L1 -2180 4761 4249 7 1637 183 42 0 0 chr3 137928468 137928492 -21671291 + (TTTTG)n Simple_repeat Simple_repeat 3 26 0 7 1637 405 318 121 38 chr3 137928492 137928780 -21671003 - L1MCc LINE L1 -2693 4248 3925 7 1637 1840 211 41 39 chr3 137929020 137929588 -21670195 + RLTR20B3 LTR ERVK 8 563 0 7 1637 230 234 15 59 chr3 137929665 137929733 -21670050 - L1M1 LINE L1 -383 5917 5853 7 1637 507 170 27 0 chr3 137930543 137930655 -21669128 - Lx9 LINE L1 -8 7636 7522 7 1637 324 0 0 0 chr3 137930691 137930727 -21669056 + (TA)n Simple_repeat Simple_repeat 1 36 0 7 1637 246 105 0 0 chr3 137930820 137930858 -21668925 + (CA)n Simple_repeat Simple_repeat 1 38 0 7 1637 2058 175 102 16 chr3 137930979 137931431 -21668352 - Lx9 LINE L1 -138 7506 7016 7 1637 260 279 105 39 chr3 137931662 137931815 -21667968 - L1MCc LINE L1 -4894 1529 1367 7 1637 4688 117 18 1 chr3 137931826 137932493 -21667290 - RLTR33 LTR ERVK 0 678 1 7 1637 333 243 110 23 chr3 137932690 137932863 -21666920 - L1MCc LINE L1 -5084 1339 1152 7 1637 423 294 62 34 chr3 137932940 137933148 -21666635 + MER34 LTR ERV1 264 477 -65 7 1637 279 228 32 16 chr3 137933845 137933970 -21665813 + Lx6 LINE L1 7334 7460 0 7 1637 249 33 0 0 chr3 137934156 137934186 -21665597 + (GA)n Simple_repeat Simple_repeat 1 30 0 7 1637 1927 143 54 31 chr3 137935429 137935819 -21663964 + MTB_Mm LTR MaLR 9 407 0 7 1637 280 159 93 47 chr3 137935859 137935945 -21663838 + L1M2a LINE L1 2136 2225 -4943 7 1637 340 276 135 19 chr3 137936268 137936475 -21663308 + L1M2 LINE L1 4566 4796 -1347 7 1637 796 274 94 71 chr3 137936528 137937019 -21662764 + RMER5 LTR ERV1 32 533 -1 7 1637 233 244 0 0 chr3 137937024 137937069 -21662714 + L1M2 LINE L1 4840 4884 -1259 7 1637 372 335 32 23 chr3 137937119 137937339 -21662444 + L1M2 LINE L1 4836 5099 -1044 7 1637 1454 118 56 4 chr3 137937584 137937929 -21661854 + RLTR9B2 LTR ERVK 14 420 0 7 1637 240 314 113 14 chr3 137939068 137939210 -21660573 + MIRb SINE MIR 98 253 -15 7 1637 230 279 109 31 chr3 137939834 137940002 -21659781 - MIRb SINE MIR -8 260 86 7 1637 219 337 146 10 chr3 137941865 137941961 -21657822 + PB1D10 SINE Alu 1 109 -8 7 1637 295 268 12 0 chr3 137941971 137942053 -21657730 + BC1_Mm scRNA scRNA 6 88 -64 7 1637 729 110 0 0 chr3 137942341 137942450 -21657333 + (TA)n Simple_repeat Simple_repeat 1 109 0 7 1637 994 136 11 6 chr3 137942457 137942635 -21657148 + (TATATG)n Simple_repeat Simple_repeat 1 179 0 7 1637 455 230 31 5 chr3 137944736 137944875 -21654908 + B3A SINE B2 70 215 -1 7 1637 2103 77 79 16 chr3 137946358 137946663 -21653120 - Lx LINE L1 -97 5786 5463 7 1637 4936 108 91 30 chr3 137946663 137947465 -21652318 + Lx LINE L1 5799 6649 -5 7 1637 43 0 0 0 chr3 137947951 137947994 -21651789 + AT_rich Low_complexity Low_complexity 1 43 0 7 1637 422 183 9 0 chr3 137948285 137948400 -21651383 + (CA)n Simple_repeat Simple_repeat 2 117 0 7 1637 253 351 9 18 chr3 137949389 137949502 -21650281 - MER5B DNA MER1_type -66 112 1 7 1637 199 318 0 29 chr3 137950548 137950616 -21649167 + MIRb SINE MIR 195 260 -8 7 1637 186 71 0 0 chr3 137951187 137951215 -21648568 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 7 1637 369 274 303 9 chr3 137951903 137952077 -21647706 - B4 SINE B4 -3 289 86 7 1637 282 56 0 0 chr3 137952077 137952113 -21647670 + (TTGG)n Simple_repeat Simple_repeat 1 36 0 7 1637 369 274 303 9 chr3 137952113 137952159 -21647624 - B4 SINE B4 -207 85 5 7 1637 252 236 91 108 chr3 137953020 137953196 -21646587 + MIRb SINE MIR 69 241 -27 7 1637 212 374 0 22 chr3 137954558 137954736 -21645047 + (TATATG)n Simple_repeat Simple_repeat 4 177 0 7 1637 549 0 0 0 chr3 137954995 137955056 -21644727 + (TC)n Simple_repeat Simple_repeat 2 62 0 7 1637 1885 213 39 15 chr3 137955224 137955633 -21644150 - MTD LTR MaLR 0 419 1 7 1637 395 190 76 0 chr3 137955738 137955817 -21643966 - B4A SINE B4 -207 85 1 7 1637 8578 139 41 67 chr3 137956411 137959569 -21640214 + L1VL2 LINE L1 300 3287 -627 7 1637 825 87 0 0 chr3 137959638 137959753 -21640030 + (GGAA)n Simple_repeat Simple_repeat 2 116 0 7 1637 6907 198 17 188 chr3 137959759 137960012 -21639771 + Lx5 LINE L1 5292 5546 -1504 7 1637 1560 84 4 0 chr3 137960012 137960237 -21639546 - MT2C_Mm LTR ERVL -249 226 1 7 1637 6907 198 17 188 chr3 137960237 137961004 -21638779 + Lx5 LINE L1 5547 6322 -728 7 1637 2024 226 11 174 chr3 137961004 137961732 -21638051 + RMER19C LTR ERVK 1 609 -2 7 1637 6907 216 31 15 chr3 137961732 137962435 -21637348 + Lx5 LINE L1 6323 7046 -4 7 1637 180 0 0 0 chr3 137962471 137962491 -21637292 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 7 1637 1204 54 0 0 chr3 137962582 137962730 -21637053 + B1_Mus1 SINE Alu 1 148 0 7 1637 250 270 54 33 chr3 137963544 137963636 -21636147 - MLT1E1 LTR MaLR -559 95 2 7 1637 307 260 121 8 chr3 137963638 137963762 -21636021 - MLT1A LTR MaLR 0 374 237 7 1637 1293 165 23 180 chr3 137963879 137964351 -21635432 + RMER10B LTR ERVL 1 398 0 7 1637 186 71 0 0 chr3 137965431 137965459 -21634324 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 7 1637 242 132 19 0 chr3 137966380 137966433 -21633350 + (CA)n Simple_repeat Simple_repeat 1 54 0 7 1637 2984 101 45 14 chr3 137967582 137968006 -21631777 + RLTR9B LTR ERVK 1 437 0 7 1637 523 254 239 16 chr3 137968006 137968190 -21631593 - B4 SINE B4 -67 225 1 7 1637 889 305 107 23 chr3 137968624 137969101 -21630682 + RMER5 LTR ERV1 8 524 -10 7 1637 257 275 154 5 chr3 137969133 137969258 -21630525 - MIR SINE MIR -87 175 40 7 1637 3151 152 52 11 chr3 137969725 137970269 -21629514 - RLTR12A LTR ERVK -1 567 2 7 1637 312 27 0 0 chr3 137971161 137971198 -21628585 + (TG)n Simple_repeat Simple_repeat 1 37 0 7 1637 258 192 0 0 chr3 137971848 137971900 -21627883 + GA-rich Low_complexity Low_complexity 3 54 0 8 1637 928 211 14 27 chr3 137974058 137974277 -21625506 + B3 SINE B2 1 216 0 8 1637 4254 42 11 6 chr3 137974278 137974806 -21624977 + L1Md_F3 LINE L1 6054 6584 0 8 1637 14885 40 0 1 chr3 137976398 137978899 -21620884 - L1Md_F2 LINE L1 -2 6580 4082 8 1637 196 28 83 0 chr3 137980676 137980712 -21619071 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 8 1637 25 0 0 0 chr3 137981002 137981027 -21618756 + AT_rich Low_complexity Low_complexity 1 25 0 8 1637 871 201 54 20 chr3 137981400 137981603 -21618180 + B3 SINE B2 1 210 -6 8 1637 440 292 0 9 chr3 137981741 137981855 -21617928 - PB1D10 SINE Alu -2 115 3 8 1637 208 103 51 0 chr3 137982902 137982941 -21616842 + (CAAA)n Simple_repeat Simple_repeat 3 43 0 8 1637 675 75 0 0 chr3 137982968 137983062 -21616721 + (GAAA)n Simple_repeat Simple_repeat 1 94 0 8 1637 333 0 0 0 chr3 137983062 137983098 -21616685 + (CAGA)n Simple_repeat Simple_repeat 2 38 0 8 1637 631 290 46 2 chr3 137983098 137983294 -21616489 + B3A SINE B2 11 216 0 8 1637 965 82 0 33 chr3 137983301 137983452 -21616331 + B2_Mm2 SINE B2 1 146 -49 8 1637 516 32 0 0 chr3 137983452 137983514 -21616269 + (TA)n Simple_repeat Simple_repeat 1 62 0 8 1637 833 153 10 91 chr3 137983514 137983571 -21616212 + B2_Mm1t SINE B2 148 192 -1 8 1637 598 146 0 10 chr3 137984475 137984572 -21615211 - B1_Mur1 SINE Alu -21 128 33 8 1637 676 91 20 0 chr3 137984579 137984678 -21615105 - B1_Mus1 SINE Alu -34 114 14 8 1637 615 126 72 0 chr3 137985714 137985825 -21613958 + B1_Mm SINE Alu 25 143 -4 8 1637 1119 20 216 20 chr3 137987376 137987529 -21612254 - B2_Mm1t SINE B2 -8 185 3 8 1637 1132 74 0 26 chr3 137989289 137989441 -21610342 - B1_Mus1 SINE Alu 0 148 1 8 1637 793 253 174 4 chr3 137990714 137990956 -21608827 - B4A SINE B4 -4 288 6 8 1637 309 68 0 0 chr3 137991786 137991830 -21607953 + (TG)n Simple_repeat Simple_repeat 1 44 0 8 1637 510 314 7 0 chr3 137991830 137991967 -21607816 - RSINE1 SINE B4 -24 141 4 8 1637 34 24 0 0 chr3 137991983 137992024 -21607759 + AT_rich Low_complexity Low_complexity 1 41 0 8 1637 252 0 0 0 chr3 137992692 137992720 -21607063 + (CA)n Simple_repeat Simple_repeat 2 29 0 8 1637 489 282 46 13 chr3 137992746 137992897 -21606886 - RMER15 LTR ERVL -121 454 299 8 1637 4093 170 75 32 chr3 137994634 137995480 -21604303 - RMER1A Other Other 0 1030 149 8 1637 406 314 57 0 chr3 137995482 137995606 -21604177 - RMER1A Other Other -760 270 140 8 1637 360 210 49 0 chr3 137995635 137995716 -21604067 - RMER1A Other Other -849 181 97 8 1637 180 0 0 0 chr3 137996374 137996394 -21603389 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 8 1637 729 0 0 0 chr3 137996612 137996693 -21603090 + (TTC)n Simple_repeat Simple_repeat 3 83 0 8 1637 212 244 0 0 chr3 137997606 137997651 -21602132 + CT-rich Low_complexity Low_complexity 3 47 0 8 1637 702 280 55 10 chr3 137999462 137999664 -21600119 + Lx6 LINE L1 7250 7460 0 8 1637 1369 213 4 4 chr3 137999736 137999995 -21599788 - Lx6 LINE L1 -234 7226 6968 8 1637 189 0 0 0 chr3 138000048 138000069 -21599714 + (TC)n Simple_repeat Simple_repeat 1 21 0 1 1637 1204 190 24 24 chr3 138000073 138000321 -21599462 - Lx6 LINE L1 -581 6879 6632 2 1637 399 192 36 71 chr3 138000317 138000429 -21599354 - L1_Mur3 LINE L1 -538 5342 5235 3 1637 811 67 8 24 chr3 138000432 138000555 -21599228 + B1_Mus1 SINE Alu 28 148 0 4 1637 197 33 33 0 chr3 138000561 138000591 -21599192 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 5 1637 3717 126 58 21 chr3 138000600 138001251 -21598532 - L1_Mur3 LINE L1 -613 5267 4593 6 1637 462 280 0 0 chr3 138001559 138001684 -21598099 - L1MA4A LINE L1 -379 5924 5800 7 1637 531 118 34 45 chr3 138001684 138001861 -21597922 + (TAGA)n Simple_repeat Simple_repeat 3 177 0 8 1637 225 0 0 0 chr3 138001874 138001899 -21597884 + (CAGA)n Simple_repeat Simple_repeat 4 28 0 9 1637 959 289 108 19 chr3 138001913 138002462 -21597321 - L1MA4A LINE L1 -512 5788 5190 7 1637 499 305 107 59 chr3 138002465 138002754 -21597029 - MER21B LTR ERV1 -111 752 450 1 1637 381 295 29 0 chr3 138002931 138003036 -21596747 - MER21B LTR ERV1 -630 233 126 1 1637 257 318 56 0 chr3 138003237 138003344 -21596439 - HERVL74-int LTR ERVL -4023 1662 1550 1 1637 401 273 108 69 chr3 138003610 138003859 -21595924 - ORR1D2 LTR MaLR -23 347 82 1 1637 336 48 0 0 chr3 138003859 138003901 -21595882 + (CA)n Simple_repeat Simple_repeat 1 42 0 1 1637 401 273 108 69 chr3 138003901 138003985 -21595798 - ORR1D2 LTR MaLR -289 81 1 1 1637 411 205 34 51 chr3 138004023 138004141 -21595642 - LTR52-int LTR ERVL -3356 200 85 1 1637 336 269 62 0 chr3 138004298 138004428 -21595355 - LTR52 LTR ERVL -46 375 238 1 1637 636 312 131 19 chr3 138004700 138005014 -21594769 + RMER15 LTR ERVL 227 575 0 1 1637 201 378 8 0 chr3 138005578 138005697 -21594086 + CT-rich Low_complexity Low_complexity 1 120 0 1 1637 474 18 0 0 chr3 138005916 138005971 -21593812 + (TG)n Simple_repeat Simple_repeat 2 56 0 1 1637 622 269 32 0 chr3 138006103 138006259 -21593524 + U1 snRNA snRNA 3 163 -2 1 1637 548 288 31 0 chr3 138007460 138007620 -21592163 + B4A SINE B4 126 290 -2 1 1637 321 26 0 0 chr3 138007674 138007712 -21592071 + (TC)n Simple_repeat Simple_repeat 1 38 0 2 1637 405 0 0 0 chr3 138007712 138007756 -21592027 + (CA)n Simple_repeat Simple_repeat 1 45 0 2 1637 472 295 35 35 chr3 138008485 138008646 -21591137 - MLT1B LTR MaLR -6 384 222 2 1637 417 20 0 0 chr3 138008646 138008696 -21591087 + (TG)n Simple_repeat Simple_repeat 1 50 0 2 1637 342 45 0 0 chr3 138008696 138008739 -21591044 + (GA)n Simple_repeat Simple_repeat 1 44 0 2 1637 472 317 78 1345 chr3 138008739 138008901 -21590882 - MLT1B LTR MaLR -169 221 3 2 1637 410 318 28 103 chr3 138009390 138009560 -21590223 - B3A SINE B2 -17 199 28 2 1637 507 56 0 0 chr3 138009560 138009631 -21590152 + (TG)n Simple_repeat Simple_repeat 2 72 0 2 1637 1087 52 0 7 chr3 138009634 138009769 -21590014 - B1_Mus1 SINE Alu -13 135 2 2 1637 382 318 28 103 chr3 138009769 138009808 -21589975 - B3 SINE B2 -181 35 2 2 1637 256 231 154 0 chr3 138009974 138010065 -21589718 + L1M4b LINE L1 807 911 -6423 2 1637 207 0 0 0 chr3 138010394 138010417 -21589366 + (A)n Simple_repeat Simple_repeat 1 23 0 2 1637 232 242 93 62 chr3 138010545 138010642 -21589141 - LTR48 LTR ERV1 -626 161 62 3 1637 2322 269 124 14 chr3 138011069 138011991 -21587792 - Lx8 LINE L1 -17 7456 6433 3 1637 1389 239 64 34 chr3 138012050 138012457 -21587326 - MTD LTR MaLR 0 419 1 3 1637 741 136 0 0 chr3 138013501 138013619 -21586164 + B1_Mur3 SINE Alu 1 118 -31 3 1637 261 0 0 0 chr3 138013626 138013655 -21586128 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 3 1637 203 319 90 42 chr3 138016183 138016350 -21583433 - MIR SINE MIR -8 254 80 3 1637 343 280 24 0 chr3 138017230 138017355 -21582428 + B1F SINE Alu 5 132 -17 3 1637 340 322 39 19 chr3 138017745 138017900 -21581883 + MER3 DNA MER1_type 24 181 -28 3 1637 491 294 7 29 chr3 138017898 138018038 -21581745 + B1_Mur2 SINE Alu 5 141 -8 3 1637 236 77 26 0 chr3 138018172 138018211 -21581572 + (ATTG)n Simple_repeat Simple_repeat 3 42 0 3 1638 919 242 14 23 chr3 138018836 138019052 -21580731 - B3 SINE B2 0 216 3 4 1638 37 23 0 0 chr3 138020500 138020544 -21579239 + AT_rich Low_complexity Low_complexity 1 44 0 4 1638 291 28 0 0 chr3 138020770 138020806 -21578977 + (TG)n Simple_repeat Simple_repeat 2 37 0 4 1638 921 188 167 0 chr3 138022349 138022541 -21577242 - URR1B DNA MER1_type -1 224 1 4 1638 1877 155 21 8 chr3 138022648 138023012 -21576771 - MTC LTR MaLR 0 421 1 4 1638 405 277 141 52 chr3 138023550 138023763 -21576020 + MTEa LTR MaLR 148 379 0 4 1638 581 278 37 63 chr3 138023776 138023797 -21575986 + L1M2 LINE L1 2482 2503 -3640 4 1638 2368 167 63 44 chr3 138023797 138024292 -21575491 - RLTR16 LTR ERVK -1 504 1 4 1638 581 278 37 63 chr3 138024292 138024620 -21575163 + L1M2 LINE L1 2504 2821 -3322 4 1638 1057 234 183 45 chr3 138025247 138025838 -21573945 + MYSERV6-int LTR ERVK 1220 1892 -7067 4 1638 614 13 13 0 chr3 138026290 138026365 -21573418 + (TAGA)n Simple_repeat Simple_repeat 4 79 0 4 1638 6980 169 77 35 chr3 138026534 138028066 -21571717 + Lx5 LINE L1 5413 7009 -41 5 1638 3568 20 2 0 chr3 138028081 138028476 -21571307 + MTA_Mm LTR MaLR 1 396 0 5 1638 225 0 0 0 chr3 138028485 138028510 -21571273 + (TTAA)n Simple_repeat Simple_repeat 4 28 0 5 1638 422 364 50 0 chr3 138028624 138028764 -21571019 + RSINE1 SINE B4 19 165 0 5 1638 22 0 0 0 chr3 138028779 138028801 -21570982 + AT_rich Low_complexity Low_complexity 1 22 0 5 1638 2230 105 8 56 chr3 138029278 138029671 -21570112 + RLTR28 LTR ERVL 1 374 -150 5 1638 1242 226 96 3 chr3 138030168 138030531 -21569252 - RMER20A LTR ERVK -119 397 1 5 1638 598 117 27 9 chr3 138030531 138030643 -21569140 + RLTR28 LTR ERVL 411 524 0 5 1638 200 204 0 58 chr3 138030985 138031037 -21568746 + GA-rich Low_complexity Low_complexity 3 51 0 5 1638 762 212 6 22 chr3 138031048 138031409 -21568374 + GA-rich Low_complexity Low_complexity 1 354 0 5 1638 996 106 25 0 chr3 138031418 138031578 -21568205 - IAPEY2_LTR LTR ERVK -193 164 1 5 1638 505 86 0 0 chr3 138031609 138031679 -21568104 + RMER10B LTR ERVL 317 386 -12 6 1638 651 145 73 112 chr3 138031672 138031851 -21567932 - URR1A DNA MER1_type -54 172 1 6 1638 458 286 126 92 chr3 138031851 138032015 -21567768 + RLTR18 LTR ERVK 35 212 -404 6 1638 1976 153 14 6 chr3 138032015 138032371 -21567412 + RLTR15 LTR ERVK 1 359 0 6 1638 458 289 117 100 chr3 138032371 138032772 -21567011 + RLTR18 LTR ERVK 183 505 -7 6 1638 240 262 16 0 chr3 138033080 138033141 -21566642 + RSINE1 SINE B4 1 62 -103 6 1638 1929 209 16 26 chr3 138033767 138034146 -21565637 - Lx5 LINE L1 0 7050 6676 6 1638 2701 107 31 21 chr3 138034225 138034645 -21565138 + Lx2 LINE L1 6574 6997 0 6 1638 5526 24 4 1 chr3 138035137 138035839 -21563944 - L1Md_F2 LINE L1 -636 5946 5243 6 1638 4884 78 9 28 chr3 138035839 138036510 -21563273 + L1Md_F2 LINE L1 5920 6577 -5 6 1638 180 0 0 0 chr3 138036515 138036535 -21563248 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 6 1638 274 326 103 9 chr3 138036557 138036789 -21562994 + L1ME3B LINE L1 5765 6018 -222 6 1638 23 54 0 0 chr3 138037707 138037744 -21562039 + AT_rich Low_complexity Low_complexity 1 37 0 7 1638 26 30 0 0 chr3 138037829 138037862 -21561921 + AT_rich Low_complexity Low_complexity 1 33 0 7 1638 385 284 20 0 chr3 138038820 138038922 -21560861 + RLTR42-int LTR ERVK 2871 2974 -2548 7 1638 324 224 45 0 chr3 138039121 138039188 -21560595 + RLTR42-int LTR ERVK 4012 4081 -1441 7 1638 393 266 27 20 chr3 138039729 138039875 -21559908 + RLTR42-int LTR ERVK 4258 4404 -1118 7 1638 1142 206 187 4 chr3 138039879 138040147 -21559636 - Lx5 LINE L1 -15 7035 6719 7 1638 23 0 0 0 chr3 138040260 138040283 -21559500 + AT_rich Low_complexity Low_complexity 1 23 0 7 1638 7718 145 64 15 chr3 138040320 138042030 -21557753 - Lx5 LINE L1 0 7050 5234 7 1638 1165 152 24 5 chr3 138042010 138042222 -21557561 - Lx5 LINE L1 -756 5121 4906 7 1638 1406 227 127 30 chr3 138042261 138042693 -21557090 + RMER19C LTR ERVK 138 611 0 7 1638 439 226 11 0 chr3 138042693 138042786 -21556997 + MurERV4_19-int LTR ERVK 1 94 -5686 7 1638 2037 172 31 81 chr3 138043189 138043670 -21556113 + RLTR25B LTR ERVK 1 457 -571 7 1638 405 196 10 219 chr3 138044034 138044230 -21555553 + RLTR25B LTR ERVK 597 751 -277 7 1638 284 216 78 10 chr3 138044239 138044342 -21555441 + RLTR25B LTR ERVK 919 1028 0 7 1638 330 287 28 0 chr3 138044408 138044516 -21555267 + PB1D10 SINE Alu 1 111 -6 7 1638 189 0 0 0 chr3 138044611 138044632 -21555151 + (A)n Simple_repeat Simple_repeat 1 21 0 7 1638 258 246 237 0 chr3 138045070 138045188 -21554595 - MER5B DNA MER1_type -6 172 27 8 1638 2475 297 71 80 chr3 138046414 138047967 -21551816 - Lx7 LINE L1 -1138 6506 4928 8 1638 1044 151 0 0 chr3 138047967 138048146 -21551637 + CT-rich Low_complexity Low_complexity 2 180 0 8 1638 2475 271 72 106 chr3 138048146 138048737 -21551046 - Lx7 LINE L1 -920 4927 4395 8 1638 648 0 0 0 chr3 138048898 138048970 -21550813 + (GAA)n Simple_repeat Simple_repeat 3 74 0 8 1638 411 171 0 0 chr3 138050869 138050945 -21548838 + GA-rich Low_complexity Low_complexity 3 78 0 8 1638 32856 95 11 16 chr3 138051283 138057476 -21542307 - L1_Mus1 LINE L1 -1 6566 409 8 1638 13149 128 13 71 chr3 138059085 138062303 -21537480 + Lx LINE L1 1 2927 -2953 8 1638 1598 70 9 9 chr3 138062303 138062534 -21537249 - L1_Mus3 LINE L1 -1 6637 6407 8 1638 13149 187 32 102 chr3 138062534 138063157 -21536626 + Lx LINE L1 2928 3495 -3162 8 1638 332 286 76 0 chr3 138063157 138063263 -21536520 - B1F SINE Alu -7 113 1 8 1638 13149 187 32 102 chr3 138063263 138066714 -21533069 + Lx LINE L1 3496 6644 -13 8 1638 522 83 0 0 chr3 138066714 138066786 -21532997 + (CA)n Simple_repeat Simple_repeat 2 73 0 8 1638 2426 238 98 75 chr3 138066786 138066947 -21532836 - Lx6 LINE L1 -319 7141 6983 9 1638 2949 124 70 27 chr3 138066947 138067459 -21532324 - Lx2 LINE L1 0 6997 6464 9 1638 2426 238 98 75 chr3 138067459 138067558 -21532225 - Lx6 LINE L1 -478 6982 6916 9 1638 747 93 0 0 chr3 138067558 138067676 -21532107 + (TC)n Simple_repeat Simple_repeat 1 118 0 9 1638 2426 238 98 75 chr3 138067676 138068285 -21531498 - Lx6 LINE L1 -545 6915 6251 9 1638 305 318 12 0 chr3 138068958 138069043 -21530740 + MLT1F2 LTR MaLR 318 403 -157 9 1638 23 68 0 0 chr3 138069351 138069395 -21530388 + AT_rich Low_complexity Low_complexity 1 44 0 9 1638 605 256 57 35 chr3 138069558 138069573 -21530210 + L1MA4 LINE L1 5696 5706 -594 9 1638 1653 183 100 6 chr3 138069573 138069924 -21529859 - ORR1C2 LTR MaLR 0 384 1 9 1638 605 256 57 35 chr3 138069924 138070135 -21529648 + L1MA4 LINE L1 5707 5927 -373 9 1638 25 0 0 0 chr3 138070141 138070166 -21529617 + AT_rich Low_complexity Low_complexity 1 25 0 9 1638 550 221 168 0 chr3 138070173 138070322 -21529461 + B3A SINE B2 2 175 -23 9 1638 332 276 32 74 chr3 138071322 138071500 -21528283 + ORR1E LTR MaLR 11 184 -175 9 1638 267 323 0 0 chr3 138071609 138071705 -21528078 - PB1D10 SINE Alu -17 100 5 1 1638 779 245 37 0 chr3 138071982 138072170 -21527613 - Lx8 LINE L1 -890 6583 6389 1 1638 193 347 10 58 chr3 138072304 138072408 -21527375 - L2b LINE L2 -41 3334 3236 1 1638 630 0 0 0 chr3 138074017 138074087 -21525696 + (TAGA)n Simple_repeat Simple_repeat 1 70 0 1 1638 786 291 32 36 chr3 138074763 138075016 -21524767 - B4 SINE B4 -1 291 40 1 1638 706 147 70 0 chr3 138075091 138075220 -21524563 + B1_Mur2 SINE Alu 12 149 0 1 1638 218 288 0 29 chr3 138076162 138076230 -21523553 + GA-rich Low_complexity Low_complexity 2 67 0 1 1638 812 89 8 0 chr3 138076233 138076356 -21523427 + (GGAA)n Simple_repeat Simple_repeat 3 126 0 1 1638 303 268 91 112 chr3 138076553 138076696 -21523087 + B4 SINE B4 80 219 -73 1 1638 658 186 0 17 chr3 138076584 138076704 -21523079 + B1_Mur2 SINE Alu 31 148 -1 1 1638 443 303 79 0 chr3 138076922 138077074 -21522709 + RSINE1 SINE B4 1 164 -1 1 1638 528 146 0 0 chr3 138077075 138077164 -21522619 + (CA)n Simple_repeat Simple_repeat 1 89 0 1 1638 226 267 110 116 chr3 138077671 138077746 -21522037 + L1ME3B LINE L1 5765 5856 -384 1 1638 1036 243 0 5 chr3 138077746 138077953 -21521830 + B3 SINE B2 3 208 -8 1 1638 226 267 110 116 chr3 138077953 138078169 -21521614 + L1ME3B LINE L1 5857 6054 -186 1 1638 8067 51 12 1 chr3 138079138 138080462 -21519321 - L1Md_F2 LINE L1 -6 6576 5237 1 1638 208 254 0 40 chr3 138081009 138081083 -21518700 + CT-rich Low_complexity Low_complexity 4 74 0 1 1638 189 0 0 0 chr3 138081298 138081319 -21518464 + (T)n Simple_repeat Simple_repeat 1 21 0 1 1638 230 116 23 0 chr3 138081460 138081503 -21518280 + (AGGGGG)n Simple_repeat Simple_repeat 1 44 0 1 1638 225 0 0 0 chr3 138081884 138081909 -21517874 + (T)n Simple_repeat Simple_repeat 1 25 0 1 1638 201 279 11 55 chr3 138082930 138083021 -21516762 + MIRc SINE MIR 61 147 -121 1 1638 668 24 24 0 chr3 138083948 138084033 -21515750 + (GGGA)n Simple_repeat Simple_repeat 2 88 0 1 1638 519 60 0 0 chr3 138084035 138084102 -21515681 + (GAAA)n Simple_repeat Simple_repeat 1 67 0 1 1638 3458 23 5 2 chr3 138084429 138084824 -21514959 - MTA_Mm LTR MaLR 0 396 1 1 1638 204 254 43 29 chr3 138084898 138084967 -21514816 + MIR SINE MIR 186 255 -7 1 1638 351 271 0 0 chr3 138085510 138085580 -21514203 - ID2 SINE ID -10 73 4 1 1638 1404 75 32 5 chr3 138085937 138086125 -21513658 - B2_Mm2 SINE B2 -1 194 2 1 1638 414 0 0 0 chr3 138086286 138086332 -21513451 + (TCTA)n Simple_repeat Simple_repeat 3 48 0 1 1638 306 159 32 0 chr3 138086332 138086395 -21513388 + B1_Mur3 SINE Alu 79 143 -6 1 1638 1150 57 28 6 chr3 138086422 138086598 -21513185 + (GGGAGA)n Simple_repeat Simple_repeat 1 180 0 1 1638 2243 187 75 29 chr3 138087607 138088163 -21511620 + RLTR31A_Mm LTR ERVK 3 584 0 1 1638 198 0 0 0 chr3 138088584 138088606 -21511177 + (TTTG)n Simple_repeat Simple_repeat 1 22 0 1 1638 2497 127 29 19 chr3 138089096 138089513 -21510270 - MTC LTR MaLR 0 421 1 1 1638 213 152 0 21 chr3 138089632 138089679 -21510104 + T-rich Low_complexity Low_complexity 2 47 0 1 1638 1120 66 0 0 chr3 138089789 138089926 -21509857 + B1_Mus2 SINE Alu 2 138 -9 1 1638 293 47 0 23 chr3 138089926 138089970 -21509813 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 1 1638 40 67 0 0 chr3 138091084 138091159 -21508624 + AT_rich Low_complexity Low_complexity 1 75 0 1 1638 403 310 49 0 chr3 138091250 138091392 -21508391 + B1F SINE Alu 1 149 0 1 1638 882 176 0 0 chr3 138091521 138091663 -21508120 - B1_Mus1 SINE Alu -5 143 2 1 1638 546 250 145 62 chr3 138092199 138092378 -21507405 - B3A SINE B2 -4 194 1 1 1638 243 79 0 0 chr3 138092431 138092469 -21507314 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 1 1638 1143 70 0 0 chr3 138092469 138092612 -21507171 - B1_Mus2 SINE Alu -3 144 2 1 1638 802 310 96 33 chr3 138093907 138094367 -21505416 - Lx9 LINE L1 -1 7643 7155 1 1638 23 33 0 0 chr3 138094375 138094405 -21505378 + AT_rich Low_complexity Low_complexity 1 30 0 1 1638 258 81 0 0 chr3 138095385 138095422 -21504361 + (T)n Simple_repeat Simple_repeat 1 37 0 1 1638 324 289 0 53 chr3 138095489 138095584 -21504199 - B1_Mur2 SINE Alu -57 92 3 1 1638 276 203 92 54 chr3 138095599 138095729 -21504054 + RMER15 LTR ERVL 427 561 -14 1 1638 4819 131 34 11 chr3 138095764 138096589 -21503194 + Lx7 LINE L1 4532 5375 -505 1 1638 883 137 19 13 chr3 138096602 138096757 -21503026 - URR1A DNA MER1_type -24 202 47 1 1638 2613 116 74 37 chr3 138096760 138097218 -21502565 - IAPLTR2_Mm LTR ERVK 0 475 1 1 1638 6975 40 12 0 chr3 138097218 138098035 -21501748 - IAPEz-int LTR ERVK 0 6481 5655 1 1638 777 121 8 8 chr3 138098033 138098150 -21501633 - IAPEz-int LTR ERVK -5328 2352 2236 1 1638 445 82 0 32 chr3 138098139 138098202 -21501581 - IAPEz-int LTR ERVK -5062 1419 1359 1 1638 5181 44 0 57 chr3 138098202 138098902 -21500881 - IAPEz-int LTR ERVK -5819 662 3 1 1638 1961 95 3 69 chr3 138098904 138099254 -21500529 - IAPLTR1a_Mm LTR ERVK -10 327 1 1 1638 1916 191 47 8 chr3 138099286 138099646 -21500137 + Lx7 LINE L1 5369 5742 -138 1 1638 1021 149 119 22 chr3 138099645 138099854 -21499929 - L1_Mur2 LINE L1 -1023 4854 4624 1 1638 207 0 0 0 chr3 138099854 138099877 -21499906 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1 1638 1021 157 97 86 chr3 138099877 138099902 -21499881 - L1_Mur2 LINE L1 -1248 4632 4606 1 1638 2797 60 56 20 chr3 138099902 138099919 -21499864 + MTB_Mm LTR MaLR 1 15 -392 1 1638 266 0 29 0 chr3 138099919 138099953 -21499830 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1 1638 2797 60 56 20 chr3 138099953 138100328 -21499455 + MTB_Mm LTR MaLR 16 406 -1 1 1638 832 176 50 223 chr3 138100328 138100495 -21499288 - L1_Mur2 LINE L1 -1253 4627 4523 1 1638 3119 110 68 2 chr3 138100498 138101027 -21498756 - L1_Mur2 LINE L1 -2395 3482 2919 1 1638 1625 83 19 45 chr3 138101027 138101291 -21498492 + RLTR19 LTR ERVK 1 257 -242 1 1638 819 144 0 46 chr3 138101488 138101523 -21498260 - B1_Mus2 SINE Alu 0 147 81 1 1638 338 165 0 174 chr3 138101523 138101561 -21498222 - MT2B LTR ERVL -337 264 238 1 1638 2460 101 28 3 chr3 138101561 138101719 -21498064 - RLTR9A LTR ERVK 0 368 204 1 1638 216 0 0 0 chr3 138101719 138101743 -21498040 + (CCCCCA)n Simple_repeat Simple_repeat 1 24 0 1 1638 2460 101 28 3 chr3 138101743 138101943 -21497840 - RLTR9A LTR ERVK -165 203 2 1 1638 819 144 0 46 chr3 138101943 138102022 -21497761 - B1_Mus2 SINE Alu -67 80 2 1 1638 338 165 0 174 chr3 138102022 138102036 -21497747 - MT2B LTR ERVL -364 237 156 1 1638 1633 236 41 16 chr3 138102044 138102449 -21497334 + Lx7 LINE L1 5930 6344 -1352 1 1638 1475 69 11 0 chr3 138102449 138102637 -21497146 - B2_Mm1t SINE B2 -3 190 1 1 1638 1633 236 41 16 chr3 138102637 138102670 -21497113 + Lx7 LINE L1 6345 6378 -1318 1 1638 4052 219 51 36 chr3 138102662 138103668 -21496115 + Lx7 LINE L1 6675 7695 -1 1 1638 916 296 108 82 chr3 138103685 138103959 -21495824 - L1MCa LINE L1 -5609 899 639 1 1638 1162 62 0 0 chr3 138103959 138104105 -21495678 - B1_Mus2 SINE Alu 0 147 2 1 1638 916 296 108 82 chr3 138104105 138104131 -21495652 - L1MCa LINE L1 -5870 638 619 1 1638 521 52 0 13 chr3 138104131 138104209 -21495574 + (GTTTG)n Simple_repeat Simple_repeat 2 78 0 1 1638 916 296 108 82 chr3 138104209 138104394 -21495389 - L1MCa LINE L1 -5890 618 428 1 1638 1180 153 46 0 chr3 138104394 138104610 -21495173 - URR1A DNA MER1_type 0 226 1 1 1638 916 296 108 82 chr3 138104610 138104937 -21494846 - L1MCa LINE L1 -6081 427 64 1 1638 307 210 122 12 chr3 138104962 138105044 -21494739 + ORR1C2 LTR MaLR 1 91 -293 1 1638 395 255 120 14 chr3 138106719 138106943 -21492840 - MER33 DNA MER1_type -80 244 1 1 1638 381 216 14 0 chr3 138107140 138107214 -21492569 - ID4 SINE ID -5 78 4 1 1638 225 178 0 0 chr3 138107255 138107300 -21492483 + CT-rich Low_complexity Low_complexity 1 45 0 1 1638 192 125 0 0 chr3 138107323 138107355 -21492428 + (TG)n Simple_repeat Simple_repeat 1 32 0 1 1638 658 230 46 33 chr3 138107357 138107510 -21492273 - B3A SINE B2 -42 156 2 1 1638 200 184 41 0 chr3 138107518 138107567 -21492216 + (TA)n Simple_repeat Simple_repeat 2 52 0 1 1638 640 239 7 0 chr3 138107603 138107741 -21492042 - B1_Mur2 SINE Alu -9 140 2 1 1638 365 133 0 13 chr3 138107865 138107941 -21491842 + (TG)n Simple_repeat Simple_repeat 2 76 0 1 1638 245 254 332 9 chr3 138107947 138108158 -21491625 - B4A SINE B4 -11 281 3 1 1638 632 234 59 17 chr3 138109322 138109530 -21490253 - B3A SINE B2 -1 215 1 1 1638 424 141 200 0 chr3 138110678 138110763 -21489020 - URR1A DNA MER1_type -124 102 1 1 1638 24 53 0 0 chr3 138110912 138110950 -21488833 + AT_rich Low_complexity Low_complexity 1 38 0 1 1638 986 141 41 16 chr3 138111043 138111237 -21488546 - RMER15 LTR ERVL 0 575 377 1 1638 960 161 122 47 chr3 138111683 138111938 -21487845 - RMER15 LTR ERVL -300 275 2 1 1638 262 292 89 32 chr3 138111954 138112078 -21487705 - B4A SINE B4 -74 218 88 1 1638 405 286 16 16 chr3 138112282 138112410 -21487373 - B4A SINE B4 -157 135 8 1 1638 929 151 53 116 chr3 138112446 138112671 -21487112 + B3 SINE B2 4 214 -2 1 1638 269 305 72 21 chr3 138112821 138112918 -21486865 + B4A SINE B4 73 174 -118 1 1638 306 344 42 0 chr3 138112852 138112948 -21486835 + PB1D10 SINE Alu 17 116 -1 1 1638 267 233 0 99 chr3 138113229 138113310 -21486473 - L1ME3A LINE L1 -11 6162 6090 1 1638 506 158 11 0 chr3 138113644 138113739 -21486044 + URR1B DNA MER1_type 130 225 0 1 1638 315 204 56 37 chr3 138113739 138113751 -21486032 - CYRA11_Mm Unknown Y-chromosome -349 268 160 1 1638 378 0 0 0 chr3 138115400 138115442 -21484341 + (CA)n Simple_repeat Simple_repeat 1 42 0 1 1638 865 241 164 16 chr3 138116039 138116451 -21483332 - L1ME3A LINE L1 -886 5414 4927 1 1638 1138 55 184 6 chr3 138117453 138117616 -21482167 + B2_Mm2 SINE B2 1 192 -3 1 1638 400 208 209 30 chr3 138117828 138117962 -21481821 + RSINE1 SINE B4 1 158 -7 1 1638 407 278 226 29 chr3 138119119 138119460 -21480323 + Lx8 LINE L1 6827 7234 -239 1 1638 564 130 130 0 chr3 138119575 138119683 -21480100 + B1_Mus1 SINE Alu 26 147 -1 1 1638 328 270 168 36 chr3 138119769 138119965 -21479818 + L1MC4 LINE L1 7134 7355 -687 1 1638 399 272 122 65 chr3 138120439 138120702 -21479081 - B4A SINE B4 -13 279 2 1 1638 906 244 66 64 chr3 138120882 138121259 -21478524 + MTEb LTR MaLR 2 379 0 1 1638 531 250 140 23 chr3 138123991 138124212 -21475571 + B4 SINE B4 37 283 -9 1 1638 1917 153 61 22 chr3 138124935 138125297 -21474486 + ORR1C1 LTR MaLR 3 378 0 1 1638 198 0 0 0 chr3 138126279 138126301 -21473482 + (CAG)n Simple_repeat Simple_repeat 3 24 0 1 1638 42 65 0 0 chr3 138126516 138126593 -21473190 + AT_rich Low_complexity Low_complexity 1 77 0 1 1638 775 145 20 14 chr3 138127114 138127261 -21472522 + B1_Mus1 SINE Alu 1 148 0 1 1638 538 235 0 0 chr3 138127435 138127537 -21472246 - B3 SINE B2 0 216 115 1 1638 369 0 0 0 chr3 138128091 138128132 -21471651 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 1638 223 158 0 26 chr3 138128510 138128549 -21471234 + (TG)n Simple_repeat Simple_repeat 1 38 0 1 1638 310 335 70 15 chr3 138128809 138129009 -21470774 + MLT1J1 LTR MaLR 55 265 -179 2 1638 403 254 137 26 chr3 138129646 138129690 -21470093 - MT2A LTR ERVL -5 528 474 2 1638 411 107 0 0 chr3 138129690 138129765 -21470018 + (CAGA)n Simple_repeat Simple_repeat 4 78 0 2 1638 403 254 137 26 chr3 138129765 138129851 -21469932 - MT2A LTR ERVL -60 473 386 2 1638 1574 62 0 0 chr3 138129851 138130044 -21469739 + B2_Mm1t SINE B2 1 193 0 2 1638 412 225 186 25 chr3 138130044 138130192 -21469591 - MT2A LTR ERVL -148 385 160 2 1638 625 196 242 28 chr3 138131294 138131472 -21468311 + B3 SINE B2 1 216 0 2 1638 1530 43 16 5 chr3 138132320 138132506 -21467277 + B2_Mm2 SINE B2 1 188 -7 2 1638 267 191 37 0 chr3 138132682 138132760 -21467023 + B1_Mur4 SINE Alu 2 84 -36 2 1638 876 20 0 0 chr3 138132763 138132865 -21466918 + (GGAA)n Simple_repeat Simple_repeat 2 103 0 2 1638 334 238 83 18 chr3 138133047 138133255 -21466528 + B4A SINE B4 27 274 -18 2 1638 1590 277 79 65 chr3 138133409 138134248 -21465535 - Lx8 LINE L1 0 7473 6574 2 1638 300 286 74 91 chr3 138134386 138134617 -21465166 - Tigger9a DNA Tigger -498 234 8 2 1638 642 168 108 31 chr3 138134676 138134805 -21464978 + B1_Mur4 SINE Alu 3 141 -9 2 1638 215 221 0 14 chr3 138134815 138134840 -21464943 + (TAAA)n Simple_repeat Simple_repeat 4 28 0 2 1638 222 37 0 0 chr3 138134840 138134867 -21464916 + (CAGA)n Simple_repeat Simple_repeat 1 27 0 2 1638 215 221 0 14 chr3 138134867 138134910 -21464873 + (TAAA)n Simple_repeat Simple_repeat 1 42 0 2 1638 212 167 21 0 chr3 138134919 138134967 -21464816 + GA-rich Low_complexity Low_complexity 4 52 0 2 1638 198 0 0 0 chr3 138135455 138135477 -21464306 + (CA)n Simple_repeat Simple_repeat 2 23 0 2 1638 773 98 187 0 chr3 138135978 138136101 -21463682 + B1_Mus2 SINE Alu 2 147 0 2 1638 307 297 62 9 chr3 138136490 138136602 -21463181 - MER2 DNA MER2_type -38 307 190 2 1638 28 61 0 0 chr3 138137067 138137116 -21462667 + AT_rich Low_complexity Low_complexity 1 49 0 2 1638 689 156 34 47 chr3 138137532 138137680 -21462103 + B1_Mus2 SINE Alu 1 146 -1 2 1638 180 0 0 0 chr3 138137688 138137708 -21462075 + (TAA)n Simple_repeat Simple_repeat 1 20 0 2 1638 826 232 33 11 chr3 138138483 138138666 -21461117 - B3 SINE B2 -27 189 3 2 1638 225 269 133 13 chr3 138139548 138139774 -21460009 + L1MD LINE L1 4465 4717 -1429 2 1638 247 301 97 32 chr3 138139985 138140232 -21459551 + L1MC LINE L1 5264 5526 -2356 2 1638 197 146 21 0 chr3 138140404 138140452 -21459331 + A-rich Low_complexity Low_complexity 2 50 0 2 1638 343 276 10 0 chr3 138140998 138141096 -21458687 + PB1D10 SINE Alu 11 109 -8 2 1638 571 253 17 28 chr3 138141252 138141431 -21458352 + MIR SINE MIR 86 262 0 2 1638 371 267 139 7 chr3 138142120 138142271 -21457512 + B3A SINE B2 8 178 -20 2 1638 695 179 73 15 chr3 138142556 138142692 -21457091 + B1_Mur2 SINE Alu 5 148 -1 2 1638 426 267 96 35 chr3 138142707 138142936 -21456847 + Lx8 LINE L1 6428 6670 -803 2 1638 335 255 9 54 chr3 138142972 138143084 -21456699 + Lx8 LINE L1 7053 7159 -314 2 1638 377 267 201 17 chr3 138143126 138143305 -21456478 + Lx8 LINE L1 7262 7473 0 2 1638 279 0 0 0 chr3 138144137 138144168 -21455615 + (A)n Simple_repeat Simple_repeat 1 31 0 2 1638 245 304 0 42 chr3 138144464 138144560 -21455223 + RSINE1 SINE B4 54 145 -20 2 1638 384 307 41 0 chr3 138145587 138145692 -21454091 + ID_B1 SINE B4 74 175 -49 2 1638 270 212 111 12 chr3 138146168 138146249 -21453534 + PB1D9 SINE Alu 2 90 -30 2 1638 628 272 85 109 chr3 138146460 138146704 -21453079 + ORR1E LTR MaLR 40 277 -82 2 1638 1472 58 21 0 chr3 138146704 138146894 -21452889 + B2_Mm2 SINE B2 2 195 0 2 1638 628 272 85 109 chr3 138146894 138146942 -21452841 + ORR1E LTR MaLR 278 325 -34 2 1638 234 247 14 0 chr3 138147307 138147380 -21452403 - Tigger6a DNA MER2_type -553 530 457 2 1638 195 42 0 0 chr3 138147475 138147499 -21452284 + (A)n Simple_repeat Simple_repeat 1 24 0 2 1638 647 232 18 58 chr3 138147572 138147796 -21451987 + B3 SINE B2 1 215 -1 2 1638 601 169 186 0 chr3 138148094 138148218 -21451565 + B1_Mus2 SINE Alu 1 147 0 2 1638 712 153 0 14 chr3 138148220 138148359 -21451424 + GA-rich Low_complexity Low_complexity 2 138 0 2 1638 1229 41 7 0 chr3 138148552 138148698 -21451085 + B1_Mus1 SINE Alu 2 148 0 2 1638 261 0 0 0 chr3 138148868 138148897 -21450886 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2 1638 1126 65 0 0 chr3 138148898 138149036 -21450747 - B1_Mus1 SINE Alu -10 138 1 2 1639 270 89 88 15 chr3 138150018 138150086 -21449697 - Lx9 LINE L1 -36 7608 7536 2 1639 372 59 0 0 chr3 138150099 138150150 -21449633 + (TG)n Simple_repeat Simple_repeat 2 52 0 2 1639 428 245 0 0 chr3 138150150 138150248 -21449535 - Lx9 LINE L1 -172 7472 7375 2 1639 640 170 303 0 chr3 138150297 138150462 -21449321 - B3 SINE B2 0 216 2 2 1639 636 232 42 14 chr3 138150484 138150628 -21449155 - B1_Mur1 SINE Alu 0 149 2 2 1639 182 37 37 0 chr3 138151028 138151055 -21448728 + (CCCCCA)n Simple_repeat Simple_repeat 3 30 0 2 1639 530 158 50 0 chr3 138151057 138151158 -21448625 - B1_Mur3 SINE Alu -32 117 12 2 1639 26 64 0 0 chr3 138152457 138152504 -21447279 + GC_rich Low_complexity Low_complexity 1 47 0 2 1639 22 0 0 0 chr3 138153004 138153026 -21446757 + AT_rich Low_complexity Low_complexity 1 22 0 2 1639 878 143 13 26 chr3 138153076 138153227 -21446556 + B1_Mur4 SINE Alu 1 149 -1 2 1639 354 259 161 0 chr3 138153557 138153669 -21446114 + RCHARR1 DNA MER1_type 3 132 -842 2 1639 817 233 47 164 chr3 138153762 138154106 -21445677 + RCHARR1 DNA MER1_type 357 661 -313 2 1639 1215 54 0 0 chr3 138154106 138154253 -21445530 + B1_Mus2 SINE Alu 1 147 0 2 1639 817 233 47 164 chr3 138154253 138154334 -21445449 + RCHARR1 DNA MER1_type 662 732 -242 2 1639 251 93 23 0 chr3 138154337 138154380 -21445403 + (TC)n Simple_repeat Simple_repeat 1 44 0 2 1639 841 139 26 46 chr3 138154400 138154551 -21445232 - B1_Mur3 SINE Alu -1 148 1 2 1639 480 228 21 183 chr3 138154557 138154646 -21445137 + RCHARR1 DNA MER1_type 736 814 -160 2 1639 875 224 5 25 chr3 138154646 138154843 -21444940 + B3A SINE B2 1 193 -5 2 1639 480 228 21 183 chr3 138154843 138154894 -21444889 + RCHARR1 DNA MER1_type 815 839 -135 2 1639 492 311 12 0 chr3 138154894 138155055 -21444728 - RSINE1 SINE B4 0 165 3 2 1639 480 228 21 183 chr3 138155055 138155197 -21444586 + RCHARR1 DNA MER1_type 840 973 -1 2 1639 331 316 42 66 chr3 138155221 138155352 -21444431 + RSINE1 SINE B4 4 134 -31 2 1639 2208 142 76 3 chr3 138155352 138155719 -21444064 - ORR1B1 LTR MaLR 0 394 1 2 1639 331 316 42 66 chr3 138155719 138155753 -21444030 + RSINE1 SINE B4 135 165 0 2 1639 21 0 0 0 chr3 138155753 138155774 -21444009 + AT_rich Low_complexity Low_complexity 1 21 0 2 1639 257 211 128 26 chr3 138156038 138156116 -21443667 + L1MC4 LINE L1 7260 7345 -697 2 1639 378 0 0 0 chr3 138156241 138156283 -21443500 + (TA)n Simple_repeat Simple_repeat 2 43 0 2 1639 1308 82 0 0 chr3 138156467 138156723 -21443060 + (TTC)n Simple_repeat Simple_repeat 1 256 0 2 1639 1218 54 0 20 chr3 138157097 138157248 -21442535 - B1_Mus1 SINE Alu 0 148 1 2 1639 1038 106 18 18 chr3 138157563 138157717 -21442066 + B2_Mm2 SINE B2 1 157 -38 2 1639 540 0 0 0 chr3 138157717 138157777 -21442006 + (GA)n Simple_repeat Simple_repeat 1 60 0 2 1639 221 83 28 0 chr3 138157903 138157939 -21441844 + (TCC)n Simple_repeat Simple_repeat 1 37 0 2 1639 267 291 89 18 chr3 138157939 138158051 -21441732 - PB1D7 SINE Alu 0 120 1 2 1639 431 204 92 9 chr3 138158220 138158329 -21441454 + B3A SINE B2 1 118 -80 2 1639 23 0 0 0 chr3 138158376 138158399 -21441384 + AT_rich Low_complexity Low_complexity 1 23 0 2 1639 836 225 0 0 chr3 138159201 138159361 -21440422 - B3 SINE B2 -54 162 3 2 1639 369 191 53 11 chr3 138159366 138159461 -21440322 + MTC-int LTR MaLR 1160 1258 0 2 1639 228 185 0 0 chr3 138159526 138159580 -21440203 + (CA)n Simple_repeat Simple_repeat 1 54 0 2 1639 212 136 0 57 chr3 138159599 138159669 -21440114 + T-rich Low_complexity Low_complexity 1 66 0 2 1639 1181 75 0 0 chr3 138159669 138159816 -21439967 - B1_Mus2 SINE Alu 0 147 1 2 1639 1335 259 82 34 chr3 138159828 138160216 -21439567 - Lx7 LINE L1 -1012 6684 6278 2 1639 312 27 0 0 chr3 138160220 138160257 -21439526 + (TC)n Simple_repeat Simple_repeat 2 38 0 2 1639 1080 75 0 0 chr3 138160259 138160393 -21439390 - B1_Mus1 SINE Alu -13 135 2 2 1639 1999 127 62 3 chr3 138160485 138160793 -21438990 - ORR1A3 LTR MaLR 0 326 1 2 1639 1470 195 57 31 chr3 138160936 138161006 -21438777 - ORR1B1 LTR MaLR 0 394 327 2 1639 5722 83 29 1 chr3 138161006 138161779 -21438004 - Lx LINE L1 -15 6639 5846 2 1639 1470 195 57 31 chr3 138161779 138162062 -21437721 - ORR1B1 LTR MaLR -68 326 32 2 1639 639 26 0 0 chr3 138162096 138162173 -21437610 + (GAAA)n Simple_repeat Simple_repeat 1 77 0 2 1639 930 324 33 19 chr3 138164187 138164552 -21435231 - MLT1B LTR MaLR -20 370 1 2 1639 207 0 0 0 chr3 138164995 138165018 -21434765 + (A)n Simple_repeat Simple_repeat 1 23 0 2 1639 482 322 49 81 chr3 138165158 138165466 -21434317 - RLTR26 LTR ERVK -176 466 169 2 1639 705 176 73 7 chr3 138165669 138165806 -21433977 + B1_Mur3 SINE Alu 2 147 -2 2 1639 180 0 0 0 chr3 138166122 138166142 -21433641 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 2 1639 273 289 22 11 chr3 138166153 138166244 -21433539 + BC1_Mm scRNA scRNA 8 99 -53 2 1639 327 114 171 0 chr3 138166247 138166317 -21433466 + B2_Mm2 SINE B2 1 82 -113 2 1639 1159 61 0 7 chr3 138166335 138166483 -21433300 + B1_Mm SINE Alu 1 147 0 2 1639 318 180 0 0 chr3 138166511 138166572 -21433211 + GA-rich Low_complexity Low_complexity 4 64 0 2 1639 633 74 156 9 chr3 138167168 138167277 -21432506 - ORR1A1 LTR MaLR -81 265 141 2 1639 461 17 0 17 chr3 138167298 138167357 -21432426 + (TAA)n Simple_repeat Simple_repeat 3 60 0 2 1639 1527 58 16 0 chr3 138167504 138167693 -21432090 - B2_Mm2 SINE B2 -2 193 2 2 1639 777 127 0 0 chr3 138168031 138168165 -21431618 + (TCC)n Simple_repeat Simple_repeat 3 136 0 2 1639 950 159 0 7 chr3 138168994 138169140 -21430643 + B1_Mur4 SINE Alu 3 147 -3 2 1639 315 0 0 0 chr3 138169140 138169175 -21430608 + (TAA)n Simple_repeat Simple_repeat 2 36 0 3 1639 668 263 17 90 chr3 138169193 138169427 -21430356 + B4A SINE B4 76 292 0 3 1639 414 0 0 0 chr3 138169430 138169476 -21430307 + (TC)n Simple_repeat Simple_repeat 1 46 0 3 1639 281 380 7 14 chr3 138169613 138169752 -21430031 - MER20 DNA MER1_type -58 161 24 3 1639 197 108 0 26 chr3 138169991 138170029 -21429754 + (TGGGGG)n Simple_repeat Simple_repeat 3 39 0 3 1639 558 43 0 0 chr3 138170130 138170199 -21429584 + (TG)n Simple_repeat Simple_repeat 2 70 0 3 1639 536 260 8 8 chr3 138170375 138170503 -21429280 - RSINE1 SINE B4 -33 132 5 3 1639 180 0 0 0 chr3 138170650 138170670 -21429113 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 3 1639 327 125 14 18 chr3 138170686 138170752 -21429031 - B2_Mm2 SINE B2 -82 116 46 3 1639 1146 101 54 0 chr3 138170822 138170990 -21428793 - B2_Mm1t SINE B2 -14 179 3 3 1639 292 111 24 71 chr3 138171006 138171132 -21428651 + (TTTG)n Simple_repeat Simple_repeat 1 120 0 3 1639 1071 116 0 0 chr3 138171140 138171287 -21428496 - B1_Mus1 SINE Alu 0 148 2 3 1639 716 143 24 8 chr3 138171290 138171417 -21428366 + B1_Mur3 SINE Alu 14 142 -7 3 1639 661 252 6 19 chr3 138171843 138172001 -21427782 - RSINE1 SINE B4 -7 158 3 3 1639 207 0 0 0 chr3 138172134 138172157 -21427626 + (TG)n Simple_repeat Simple_repeat 2 24 0 3 1639 291 54 0 0 chr3 138172383 138172420 -21427363 + (CA)n Simple_repeat Simple_repeat 1 37 0 3 1639 325 250 229 0 chr3 138172582 138172726 -21427057 + MIR SINE MIR 66 242 -20 3 1639 25 65 0 0 chr3 138172910 138172956 -21426827 + AT_rich Low_complexity Low_complexity 1 46 0 3 1639 969 200 24 14 chr3 138173081 138173294 -21426489 - B3 SINE B2 -1 215 1 3 1639 577 250 46 11 chr3 138173374 138173548 -21426235 - B3A SINE B2 -18 180 1 3 1639 215 316 163 22 chr3 138173757 138173935 -21425848 + L2 LINE L2 2708 2910 -509 3 1639 386 188 246 41 chr3 138174417 138174539 -21425244 + URR1A DNA MER1_type 78 224 -2 3 1639 1882 93 53 62 chr3 138174576 138174897 -21424886 + ORR1A3 LTR MaLR 1 318 -8 3 1639 1407 80 5 21 chr3 138175024 138175216 -21424567 - B2_Mm2 SINE B2 -3 192 4 3 1639 229 120 0 57 chr3 138175217 138175270 -21424513 + CT-rich Low_complexity Low_complexity 3 52 0 3 1639 418 250 184 18 chr3 138175318 138175331 -21424452 - MTEa LTR MaLR -178 201 185 3 1639 352 258 198 16 chr3 138175331 138175457 -21424326 - RSINE1 SINE B4 -14 151 3 3 1639 418 250 184 18 chr3 138175457 138175606 -21424177 - MTEa LTR MaLR -195 184 13 3 1639 387 276 25 49 chr3 138175754 138175876 -21423907 + RSINE1 SINE B4 6 124 -41 3 1639 273 169 0 0 chr3 138175878 138175937 -21423846 + CT-rich Low_complexity Low_complexity 1 59 0 3 1639 950 151 191 22 chr3 138177042 138177225 -21422558 + B3 SINE B2 3 216 0 3 1639 216 86 0 0 chr3 138178297 138178332 -21421451 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 3 1639 24 0 0 0 chr3 138178465 138178489 -21421294 + AT_rich Low_complexity Low_complexity 1 24 0 3 1639 1683 160 67 22 chr3 138178503 138178861 -21420922 + RLTR30 LTR ERV1 6 379 0 3 1639 398 297 78 71 chr3 138178870 138179158 -21420625 - B4A SINE B4 -9 283 14 3 1639 267 276 93 31 chr3 138179641 138179738 -21420045 - ID_B1 SINE B4 -44 180 78 3 1639 479 320 79 112 chr3 138179869 138179962 -21419821 + MTE2a LTR MaLR 1 66 -353 3 1639 1076 95 0 20 chr3 138179962 138179976 -21419807 - B1_Mm SINE Alu 0 147 136 3 1639 197 0 71 0 chr3 138179976 138180004 -21419779 + (TTTTA)n Simple_repeat Simple_repeat 2 31 0 3 1639 1076 95 0 20 chr3 138180004 138180139 -21419644 - B1_Mm SINE Alu -12 135 1 3 1639 812 260 82 54 chr3 138180139 138180469 -21419314 + MTE2a LTR MaLR 57 405 -14 3 1639 1290 78 43 32 chr3 138180533 138180719 -21419064 - B2_Mm2 SINE B2 -4 191 4 3 1639 920 140 0 20 chr3 138180814 138180960 -21418823 + B1_Mur4 SINE Alu 2 144 -6 3 1639 833 223 106 5 chr3 138180980 138181169 -21418614 - B3 SINE B2 -7 209 2 3 1639 207 0 0 0 chr3 138181314 138181337 -21418446 + (TC)n Simple_repeat Simple_repeat 2 24 0 3 1639 1077 75 7 46 chr3 138181337 138181490 -21418293 - B1_Mus1 SINE Alu -1 147 1 3 1639 253 239 29 43 chr3 138182143 138182213 -21417570 + MER57-int LTR ERV1 7155 7223 -314 3 1639 2367 0 0 0 chr3 138182527 138182785 -21416998 - L1Md_T LINE L1 0 6582 6325 3 1639 3097 129 25 31 chr3 138183259 138183777 -21416006 - Lx2B LINE L1 -4 6996 6482 3 1639 256 269 0 29 chr3 138184533 138184602 -21415181 + RSINE1 SINE B4 3 69 -96 3 1639 464 254 36 22 chr3 138185095 138185232 -21414551 + B1F SINE Alu 6 144 -5 3 1639 216 151 74 19 chr3 138185244 138185298 -21414485 + ID4 SINE ID 2 58 -25 3 1639 319 285 123 63 chr3 138185401 138185654 -21414129 + RMER20B LTR ERVK 134 399 -228 3 1639 1097 56 35 7 chr3 138186569 138186713 -21413070 - B1_Mus1 SINE Alu 0 148 1 3 1639 641 141 90 38 chr3 138186978 138187111 -21412672 - B1_Mur3 SINE Alu -1 148 9 3 1639 379 300 9 9 chr3 138187144 138187255 -21412528 + PB1 SINE Alu 2 112 -15 3 1639 1104 56 42 0 chr3 138187456 138187598 -21412185 + B1_Mus1 SINE Alu 1 148 0 3 1639 252 77 0 0 chr3 138187603 138187642 -21412141 + (A)n Simple_repeat Simple_repeat 1 39 0 3 1639 1220 41 0 20 chr3 138187713 138187862 -21411921 - B1_Mus2 SINE Alu -1 146 1 3 1639 232 333 0 0 chr3 138187862 138187922 -21411861 - ID4_ SINE ID -22 61 2 3 1639 243 236 208 0 chr3 138188195 138188267 -21411516 - ID SINE ID -137 87 1 3 1639 721 226 13 113 chr3 138188893 138189132 -21410651 + ID_B1 SINE B4 3 217 -7 3 1639 332 270 53 55 chr3 138189239 138189399 -21410384 - MIR SINE MIR -79 189 26 3 1639 249 33 0 0 chr3 138190054 138190084 -21409699 + (A)n Simple_repeat Simple_repeat 1 30 0 3 1639 215 204 8 92 chr3 138190492 138190611 -21409172 + (CGGGG)n Simple_repeat Simple_repeat 2 110 0 3 1639 242 217 48 48 chr3 138192407 138192470 -21407313 + B1_Mur4 SINE Alu 1 63 -87 3 1639 270 115 0 0 chr3 138192706 138192758 -21407025 + (T)n Simple_repeat Simple_repeat 1 52 0 3 1639 1056 177 48 0 chr3 138192782 138192991 -21406792 + URR1B DNA MER1_type 7 225 0 3 1639 288 257 55 117 chr3 138193401 138193415 -21406368 - B1F1 SINE Alu -27 122 3 3 1639 298 324 18 53 chr3 138193415 138193529 -21406254 - B4 SINE B4 -95 197 88 3 1639 395 248 71 27 chr3 138193582 138193694 -21406089 + PB1D10 SINE Alu 1 117 0 3 1639 332 290 98 8 chr3 138193720 138193852 -21405931 + RSINE1 SINE B4 12 155 -10 3 1639 628 154 171 96 chr3 138193894 138194081 -21405702 + B3 SINE B2 2 202 -14 3 1639 920 139 60 11 chr3 138194432 138194614 -21405169 + URR1B DNA MER1_type 35 225 0 3 1639 186 277 123 36 chr3 138195446 138195580 -21404203 - MIRc SINE MIR -16 252 101 3 1639 342 61 0 0 chr3 138197045 138197094 -21402689 + (T)n Simple_repeat Simple_repeat 1 49 0 3 1639 1122 23 0 0 chr3 138197108 138197237 -21402546 - B1_Mus2 SINE Alu -15 132 4 3 1639 467 211 56 0 chr3 138197350 138197440 -21402343 - PB1D9 SINE Alu -10 110 16 3 1639 612 216 181 0 chr3 138197734 138197881 -21401902 + B3 SINE B2 2 175 -41 3 1639 180 77 0 0 chr3 138197881 138197907 -21401876 + (TG)n Simple_repeat Simple_repeat 1 26 0 3 1639 612 216 181 0 chr3 138197907 138197930 -21401853 + B3 SINE B2 176 202 -14 3 1639 741 249 26 21 chr3 138198030 138198145 -21401638 - B3A SINE B2 -4 194 83 3 1639 500 0 17 0 chr3 138198145 138198205 -21401578 + (TG)n Simple_repeat Simple_repeat 1 61 0 3 1639 741 249 26 21 chr3 138198205 138198282 -21401501 - B3A SINE B2 -116 82 3 3 1639 1610 226 172 45 chr3 138198465 138198628 -21401155 - Lx7 LINE L1 -284 7412 7252 3 1639 228 35 0 0 chr3 138198628 138198657 -21401126 + (GA)n Simple_repeat Simple_repeat 1 29 0 3 1639 342 0 0 0 chr3 138198657 138198694 -21401089 + (TG)n Simple_repeat Simple_repeat 2 39 0 3 1639 1610 226 172 45 chr3 138198694 138199080 -21400703 - Lx7 LINE L1 -445 7251 6793 3 1639 1067 186 127 47 chr3 138199072 138199348 -21400435 - Lx7 LINE L1 -1182 6514 6217 3 1639 507 214 10 0 chr3 138199385 138199488 -21400295 - B1_Mm SINE Alu -34 113 10 3 1639 1377 53 41 0 chr3 138199488 138199658 -21400125 + B2_Mm2 SINE B2 5 181 -14 3 1639 315 305 116 26 chr3 138199819 138199974 -21399809 - ID_B1 SINE B4 -4 220 52 3 1639 221 30 61 0 chr3 138200614 138200647 -21399136 + (GAAA)n Simple_repeat Simple_repeat 2 36 0 3 1639 292 264 124 59 chr3 138200658 138200811 -21398972 + Lx8 LINE L1 7209 7371 -102 3 1639 702 190 16 0 chr3 138201585 138201706 -21398077 - B1_Mur4 SINE Alu -27 123 1 3 1639 811 234 36 107 chr3 138202069 138202265 -21397518 - B3A SINE B2 -10 185 4 3 1639 264 288 0 0 chr3 138202362 138202427 -21397356 + PB1D7 SINE Alu 2 66 -51 3 1639 2181 104 3 0 chr3 138203889 138204207 -21395576 - ORR1A2 LTR MaLR -8 319 1 3 1639 243 0 0 0 chr3 138204228 138204255 -21395528 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 3 1639 400 232 207 14 chr3 138204272 138204412 -21395371 + B3A SINE B2 2 168 -30 3 1639 219 315 163 6 chr3 138204533 138204699 -21395084 - MIRb SINE MIR -14 254 63 3 1639 26 0 0 0 chr3 138205571 138205597 -21394186 + AT_rich Low_complexity Low_complexity 1 26 0 3 1639 852 147 196 38 chr3 138206104 138206288 -21393495 - B3 SINE B2 -1 215 3 3 1639 316 265 176 0 chr3 138206397 138206499 -21393284 + PB1D9 SINE Alu 1 120 0 3 1639 629 238 160 11 chr3 138206509 138206696 -21393087 + B3 SINE B2 2 216 0 3 1639 272 310 140 7 chr3 138207553 138207696 -21392087 - RSINE1 SINE B4 -2 163 2 3 1639 252 250 0 0 chr3 138207788 138207848 -21391935 + (CTAG)n Simple_repeat Simple_repeat 3 62 0 3 1639 27 0 0 0 chr3 138208210 138208237 -21391546 + AT_rich Low_complexity Low_complexity 1 27 0 4 1639 397 246 209 34 chr3 138208238 138208415 -21391368 + B3 SINE B2 1 208 -8 4 1639 853 229 22 54 chr3 138209660 138209882 -21389901 - B3 SINE B2 0 216 2 4 1639 413 214 111 0 chr3 138209982 138210099 -21389684 + B1_Mus2 SINE Alu 1 130 -17 4 1639 423 301 150 0 chr3 138210350 138210596 -21389187 - L1MB3 LINE L1 -216 5967 5685 4 1639 304 264 14 0 chr3 138211450 138211522 -21388261 - ID4 SINE ID -2 81 9 4 1639 309 109 0 0 chr3 138211919 138211974 -21387809 + (T)n Simple_repeat Simple_repeat 1 55 0 4 1639 345 260 50 10 chr3 138214031 138214132 -21385651 + U6 snRNA snRNA 1 105 -2 4 1639 228 212 76 0 chr3 138214142 138214208 -21385575 + L1M2 LINE L1 5862 5932 -368 4 1639 743 182 29 0 chr3 138214661 138214798 -21384985 + B1_Mur3 SINE Alu 1 141 -8 4 1639 1298 191 0 0 chr3 138215295 138215520 -21384263 - URR1B DNA MER1_type 0 225 1 4 1639 240 208 136 19 chr3 138215537 138215640 -21384143 + L1MB3 LINE L1 6032 6146 -37 4 1639 633 48 276 0 chr3 138215769 138215874 -21383909 - B1_Mus1 SINE Alu -14 134 1 4 1639 470 188 40 64 chr3 138215949 138216074 -21383709 + B3 SINE B2 1 122 -94 4 1639 323 282 0 0 chr3 138216176 138216247 -21383536 + RSINE1 SINE B4 15 85 -80 4 1639 180 0 0 0 chr3 138216490 138216510 -21383273 + (TA)n Simple_repeat Simple_repeat 2 21 0 4 1639 224 214 0 0 chr3 138217650 138217692 -21382091 + (TCCA)n Simple_repeat Simple_repeat 1 42 0 4 1639 506 157 28 38 chr3 138217693 138217799 -21381984 - PB1D9 SINE Alu -10 110 6 4 1639 299 253 22 44 chr3 138217721 138217812 -21381971 - B4 SINE B4 -123 169 81 4 1639 268 256 209 11 chr3 138221160 138221251 -21378532 + PB1D10 SINE Alu 7 115 -2 4 1639 226 306 28 0 chr3 138221251 138221323 -21378460 + ID4 SINE ID 2 75 -8 4 1639 376 164 60 0 chr3 138221477 138221544 -21378239 + B1_Mus2 SINE Alu 69 139 -8 4 1639 180 0 0 0 chr3 138221651 138221671 -21378112 + (GTTTG)n Simple_repeat Simple_repeat 2 21 0 4 1639 552 249 72 39 chr3 138221678 138221858 -21377925 - B3 SINE B2 -30 186 1 4 1639 456 105 267 17 chr3 138221888 138222004 -21377779 - B1_Mus1 SINE Alu -1 147 3 4 1639 574 203 24 16 chr3 138222039 138222164 -21377619 + B1_Mur3 SINE Alu 1 126 -23 4 1639 763 103 143 0 chr3 138222173 138222299 -21377484 - B1_Mus1 SINE Alu 0 148 5 4 1639 377 233 156 0 chr3 138222462 138222552 -21377231 - PB1D10 SINE Alu 0 117 14 4 1639 574 189 164 3 chr3 138223855 138224007 -21375776 - ORR1C1 LTR MaLR -10 368 136 4 1639 367 289 198 71 chr3 138223961 138224173 -21375610 + B4A SINE B4 41 279 -13 4 1639 1205 48 0 20 chr3 138224415 138224565 -21375218 - B1_Mus1 SINE Alu 0 148 2 4 1639 531 275 155 48 chr3 138224586 138224960 -21374823 - L1MC4 LINE L1 -957 7085 6672 4 1639 407 307 160 15 chr3 138225467 138225699 -21374084 + Tigger5 DNA MER2_type 2 266 -2140 4 1639 297 0 0 0 chr3 138225699 138225732 -21374051 + (TG)n Simple_repeat Simple_repeat 2 34 0 4 1639 407 307 160 15 chr3 138225732 138225767 -21374016 + Tigger5 DNA MER2_type 267 308 -2098 4 1639 472 226 40 8 chr3 138225771 138225896 -21373887 + Tigger5 DNA MER2_type 2191 2319 -87 4 1639 244 235 110 12 chr3 138226298 138226380 -21373403 - B1F2 SINE Alu -11 138 49 4 1639 278 243 17 120 chr3 138226538 138226575 -21373208 - B4 SINE B4 -94 198 166 4 1639 1255 133 37 0 chr3 138226575 138226763 -21373020 - B2_Mm2 SINE B2 0 195 1 4 1639 346 200 40 13 chr3 138226766 138226842 -21372941 - B1_Mur4 SINE Alu -63 87 10 4 1639 864 235 24 0 chr3 138226832 138226998 -21372785 - B3 SINE B2 -46 170 1 4 1639 529 261 58 7 chr3 138227520 138227659 -21372124 + B3A SINE B2 47 192 -6 4 1639 239 295 33 0 chr3 138227888 138227949 -21371834 - B4A SINE B4 -4 288 226 4 1639 646 281 18 71 chr3 138228327 138228553 -21371230 - B4A SINE B4 -75 217 4 4 1639 1094 97 7 0 chr3 138228853 138228997 -21370786 - B1_Mus2 SINE Alu 0 147 3 4 1639 223 255 0 19 chr3 138229361 138229413 -21370370 + CT-rich Low_complexity Low_complexity 3 53 0 4 1639 335 265 17 25 chr3 138229424 138229544 -21370239 - PB1D9 SINE Alu 0 120 2 4 1639 349 150 0 16 chr3 138229982 138230043 -21369740 - HAL1-3A_ME LINE L1 -823 2035 1976 4 1639 237 254 0 0 chr3 138230064 138230194 -21369589 + (TG)n Simple_repeat Simple_repeat 1 130 0 4 1639 854 273 19 19 chr3 138230467 138230676 -21369107 + B3 SINE B2 6 214 -2 4 1639 734 188 21 21 chr3 138230707 138230848 -21368935 + B1_Mur3 SINE Alu 9 149 0 4 1639 334 219 16 0 chr3 138230910 138230974 -21368809 + ID4 SINE ID 9 73 -10 4 1639 321 26 0 0 chr3 138230978 138231016 -21368767 + (CA)n Simple_repeat Simple_repeat 1 38 0 4 1639 1216 55 0 0 chr3 138231286 138231431 -21368352 - B1_Mm SINE Alu -2 145 1 4 1639 730 241 175 0 chr3 138231565 138231731 -21368052 - B3 SINE B2 -21 195 1 4 1639 435 271 79 44 chr3 138231731 138231958 -21367825 - Zaphod DNA Tip100 -3165 866 632 4 1639 1634 188 87 9 chr3 138231992 138232325 -21367458 - ORR1B2 LTR MaLR -8 359 1 4 1639 347 282 9 0 chr3 138232372 138232456 -21367327 - ID4 SINE ID -62 90 2 4 1639 263 28 28 0 chr3 138232457 138232493 -21367290 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 4 1639 470 280 60 15 chr3 138232496 138232630 -21367153 - B1F SINE Alu -7 142 3 4 1639 264 200 15 44 chr3 138233230 138233298 -21366485 - B3 SINE B2 0 216 151 4 1639 686 242 20 0 chr3 138233326 138233479 -21366304 - RSINE1 SINE B4 -8 157 2 4 1639 1703 168 144 0 chr3 138233523 138233850 -21365933 - ORR1D1 LTR MaLR 0 374 1 4 1639 389 294 153 31 chr3 138233868 138234320 -21365463 - L1M5 LINE L1 -2529 3617 3111 4 1639 483 313 152 29 chr3 138234483 138235115 -21364668 + L1M5 LINE L1 4579 5288 -858 4 1639 588 113 217 0 chr3 138235116 138235222 -21364561 + B1_Mus1 SINE Alu 5 133 -15 4 1639 2169 103 25 46 chr3 138235225 138235272 -21364511 - ORR1A3 LTR MaLR -8 318 276 4 1639 1283 110 10 10 chr3 138235272 138235465 -21364318 - B2_Mm2 SINE B2 0 195 3 4 1639 2169 103 25 46 chr3 138235465 138235742 -21364041 - ORR1A3 LTR MaLR -51 275 1 4 1639 9179 137 14 143 chr3 138235742 138236730 -21363053 - ORR1A3-int LTR MaLR 0 1792 808 4 1639 262 61 41 0 chr3 138236737 138236786 -21362997 + (TTTG)n Simple_repeat Simple_repeat 2 52 0 4 1639 1171 82 0 0 chr3 138236786 138236924 -21362859 - B1_Mm SINE Alu -7 140 3 4 1639 9179 137 14 143 chr3 138236924 138237994 -21361789 - ORR1A3-int LTR MaLR -985 807 1 4 1639 1109 129 6 6 chr3 138237994 138238166 -21361617 - ORR1A3 LTR MaLR 0 346 175 4 1639 1289 88 11 6 chr3 138238167 138238350 -21361433 - B2_Mm2 SINE B2 -11 184 1 4 1639 1210 84 0 6 chr3 138238351 138238519 -21361264 - ORR1A3 LTR MaLR -160 167 1 4 1639 198 71 0 0 chr3 138238530 138238558 -21361225 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 4 1639 300 213 40 13 chr3 138238570 138238583 -21361200 + B4 SINE B4 70 146 -145 4 1639 302 180 0 16 chr3 138238583 138238645 -21361138 + B1_Mur3 SINE Alu 1 61 -88 4 1639 494 277 7 66 chr3 138238684 138238835 -21360948 + ID_B1 SINE B4 76 217 -7 4 1639 610 300 0 12 chr3 138238847 138239009 -21360774 + B4A SINE B4 3 162 -130 4 1639 239 293 43 8 chr3 138239109 138239226 -21360557 + L1M5 LINE L1 5283 5403 -743 4 1639 389 250 51 20 chr3 138239319 138239417 -21360366 + PB1D10 SINE Alu 12 112 -5 4 1639 258 217 17 0 chr3 138241272 138241332 -21358451 - PB1D10 SINE Alu -21 96 36 4 1639 1296 227 71 26 chr3 138241739 138242082 -21357701 - ORR1E LTR MaLR -6 353 4 4 1639 395 272 8 109 chr3 138242102 138242230 -21357553 + B3A SINE B2 46 160 -38 4 1639 318 67 0 0 chr3 138242235 138242280 -21357503 + (CA)n Simple_repeat Simple_repeat 2 46 0 4 1639 383 177 0 10 chr3 138242281 138242378 -21357405 + GA-rich Low_complexity Low_complexity 2 97 0 4 1639 1166 48 14 0 chr3 138242383 138242529 -21357254 + B1_Mus1 SINE Alu 1 148 0 4 1639 180 0 0 0 chr3 138242548 138242568 -21357215 + (GAAAA)n Simple_repeat Simple_repeat 2 21 0 4 1639 205 88 0 29 chr3 138242666 138242701 -21357082 + (TTTTTG)n Simple_repeat Simple_repeat 2 35 0 4 1639 21 57 0 0 chr3 138243591 138243626 -21356157 + AT_rich Low_complexity Low_complexity 1 35 0 4 1639 519 96 0 0 chr3 138243713 138243796 -21355987 + (GAAA)n Simple_repeat Simple_repeat 1 83 0 4 1639 557 273 8 15 chr3 138245639 138245769 -21354014 - B3A SINE B2 -69 129 1 4 1639 256 259 23 23 chr3 138245793 138245880 -21353903 - L1M4 LINE L1 -1314 4832 4746 4 1639 579 255 176 24 chr3 138246282 138246317 -21353466 - B3A SINE B2 -8 190 152 4 1639 333 0 0 0 chr3 138246317 138246354 -21353429 + (TG)n Simple_repeat Simple_repeat 1 37 0 4 1639 579 255 176 24 chr3 138246354 138246483 -21353300 - B3A SINE B2 -47 151 1 4 1639 607 247 75 125 chr3 138246693 138247068 -21352715 - RLTR15 LTR ERVK -3 356 1 4 1639 530 256 53 60 chr3 138247068 138247200 -21352583 + RSINE1 SINE B4 29 159 -6 4 1639 888 312 4 25 chr3 138247243 138247477 -21352306 + B4A SINE B4 3 231 -61 4 1639 608 286 6 53 chr3 138247477 138247647 -21352136 + RSINE1 SINE B4 4 165 0 4 1639 252 307 100 23 chr3 138247647 138247777 -21352006 + L1MCb LINE L1 219 358 -5687 4 1639 469 226 166 13 chr3 138248040 138248097 -21351686 - B4A SINE B4 -5 287 107 4 1639 497 194 0 20 chr3 138248097 138248197 -21351586 - PB1D9 SINE Alu -1 119 22 4 1639 665 261 62 143 chr3 138248198 138248408 -21351375 - B4A SINE B4 -64 228 36 4 1639 288 143 36 0 chr3 138248470 138248526 -21351257 + ID SINE ID 1 58 -166 4 1639 307 286 6 157 chr3 138248636 138248802 -21350981 + MT2B LTR ERVL 145 285 -316 4 1639 943 149 0 7 chr3 138248669 138248811 -21350972 + B1_Mur2 SINE Alu 9 149 0 4 1639 239 250 12 70 chr3 138248925 138249011 -21350772 + L1MCb LINE L1 2905 2985 -3579 4 1639 321 297 94 0 chr3 138249128 138249266 -21350517 + L1MCb LINE L1 3160 3310 -3254 4 1639 354 239 106 35 chr3 138249309 138249422 -21350361 - B1F1 SINE Alu -7 142 22 4 1639 180 176 0 0 chr3 138249687 138249721 -21350062 + T-rich Low_complexity Low_complexity 1 34 0 5 1639 444 320 14 0 chr3 138249850 138249997 -21349786 + L1M5 LINE L1 5498 5646 -478 5 1639 399 294 237 33 chr3 138250236 138250510 -21349273 + ORR1E LTR MaLR 1 330 -29 5 1639 186 43 0 0 chr3 138250750 138250773 -21349010 + (CAA)n Simple_repeat Simple_repeat 2 24 0 5 1639 385 204 170 11 chr3 138251509 138251603 -21348180 + B1_Mur1 SINE Alu 36 144 -5 5 1639 180 172 17 33 chr3 138251603 138251663 -21348120 + GA-rich Low_complexity Low_complexity 3 61 0 5 1639 1070 128 0 11 chr3 138251666 138251848 -21347935 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 5 1639 21 0 0 0 chr3 138251954 138251975 -21347808 + AT_rich Low_complexity Low_complexity 1 21 0 5 1639 539 287 211 13 chr3 138252329 138252632 -21347151 - MLT1A0 LTR MaLR 0 365 3 5 1639 280 318 45 15 chr3 138252733 138252867 -21346916 - L1MC4 LINE L1 -1443 6599 6462 5 1639 662 228 63 0 chr3 138252997 138253124 -21346659 + RSINE1 SINE B4 2 136 -29 5 1639 240 329 188 49 chr3 138253300 138253524 -21346259 - MLT1I LTR MaLR -43 368 114 5 1639 780 167 236 22 chr3 138254258 138254436 -21345347 - B3 SINE B2 0 216 1 5 1639 710 249 94 45 chr3 138254512 138254714 -21345069 - Tigger5 DNA MER2_type -2194 212 1 5 1639 386 226 9 0 chr3 138255370 138255476 -21344307 + (TATG)n Simple_repeat Simple_repeat 3 109 0 5 1639 214 298 18 0 chr3 138255492 138255549 -21344234 - PB1D10 SINE Alu -10 107 50 5 1639 1166 172 84 29 chr3 138255550 138255789 -21343994 + Lx4B LINE L1 6802 7053 -5 5 1639 198 224 41 0 chr3 138256579 138256628 -21343155 - L2b LINE L2 -20 3355 3305 5 1639 321 103 18 0 chr3 138256905 138256969 -21342814 - B1_Mus2 SINE Alu -14 133 37 5 1639 245 333 176 28 chr3 138257256 138257432 -21342351 + L2 LINE L2 2661 2862 -557 5 1639 904 264 60 39 chr3 138257728 138258012 -21341771 - MTD LTR MaLR -3 416 127 5 1639 836 127 7 0 chr3 138258422 138258564 -21341219 + (GA)n Simple_repeat Simple_repeat 1 143 0 5 1639 543 249 25 20 chr3 138259516 138259684 -21340099 - MER57-int LTR ERV1 -232 7305 7157 5 1639 1417 54 21 31 chr3 138259870 138260062 -21339721 - B2_Mm2 SINE B2 -5 190 1 5 1639 682 279 91 42 chr3 138260236 138260501 -21339282 - B4A SINE B4 -8 284 7 5 1639 23 0 0 0 chr3 138260669 138260692 -21339091 + AT_rich Low_complexity Low_complexity 1 23 0 5 1639 188 34 0 33 chr3 138261090 138261120 -21338663 + (TTTG)n Simple_repeat Simple_repeat 3 31 0 5 1639 824 192 141 0 chr3 138261123 138261300 -21338483 - ID_B1 SINE B4 -22 202 1 5 1639 213 170 0 0 chr3 138261805 138261817 -21337966 + (TCTG)n Simple_repeat Simple_repeat 1 12 0 5 1639 675 0 0 0 chr3 138261817 138261892 -21337891 + (TCTCTG)n Simple_repeat Simple_repeat 2 76 0 5 1639 213 170 0 0 chr3 138261892 138261926 -21337857 + (TCTG)n Simple_repeat Simple_repeat 3 36 0 5 1639 1473 178 76 23 chr3 138262235 138262539 -21337244 + Lx LINE L1 6335 6654 0 5 1639 360 64 0 0 chr3 138262539 138262586 -21337197 + (GA)n Simple_repeat Simple_repeat 1 47 0 5 1639 546 69 0 0 chr3 138262586 138262658 -21337125 + ORR1A4 LTR MaLR 258 329 0 5 1639 378 0 0 0 chr3 138263128 138263170 -21336613 + (TG)n Simple_repeat Simple_repeat 2 43 0 5 1639 616 280 59 88 chr3 138263171 138263211 -21336572 - B4A SINE B4 -41 251 226 5 1639 924 245 38 5 chr3 138263211 138263420 -21336363 - B3 SINE B2 0 216 1 5 1639 616 280 59 88 chr3 138263420 138263583 -21336200 - B4A SINE B4 -67 225 54 5 1639 999 109 0 0 chr3 138263893 138264030 -21335753 + B1_Mus2 SINE Alu 1 137 -10 5 1639 216 0 0 0 chr3 138264030 138264054 -21335729 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 5 1639 387 0 0 0 chr3 138264055 138264098 -21335685 + (CA)n Simple_repeat Simple_repeat 2 44 0 5 1639 648 333 218 39 chr3 138265414 138265973 -21333810 - MLT1F-int LTR MaLR -538 951 293 5 1639 237 229 49 0 chr3 138266022 138266083 -21333700 + CT-rich Low_complexity Low_complexity 4 67 0 5 1639 290 221 43 14 chr3 138266087 138266156 -21333627 - ORR1D2 LTR MaLR -56 314 244 5 1639 569 56 0 0 chr3 138266204 138266276 -21333507 - B2_Mm2 SINE B2 -123 72 1 5 1639 773 113 0 9 chr3 138266322 138266438 -21333345 + B2_Mm2 SINE B2 80 194 -1 5 1639 181 98 49 0 chr3 138266478 138266519 -21333264 + (CAAAAA)n Simple_repeat Simple_repeat 2 44 0 5 1639 656 239 28 14 chr3 138266615 138266759 -21333024 - B1_Mus2 SINE Alu -1 146 1 5 1639 2298 109 19 3 chr3 138267342 138267664 -21332119 - ORR1A2 LTR MaLR 0 327 1 5 1639 231 224 137 87 chr3 138268411 138268546 -21331237 + MamGypLTR1d LTR Gypsy 61 194 -609 5 1639 448 212 185 8 chr3 138268685 138268804 -21330979 + B1F2 SINE Alu 2 141 -8 5 1639 216 0 0 0 chr3 138268807 138268831 -21330952 + (TG)n Simple_repeat Simple_repeat 2 25 0 5 1639 585 269 104 18 chr3 138268834 138268986 -21330797 + B3A SINE B2 6 172 -26 5 1639 509 44 15 0 chr3 138268986 138269054 -21330729 + (TC)n Simple_repeat Simple_repeat 2 70 0 5 1639 585 238 100 669 chr3 138269054 138269091 -21330692 + B3A SINE B2 173 205 -11 5 1639 1273 62 6 0 chr3 138269146 138269306 -21330477 + B2_Mm2 SINE B2 1 161 -34 5 1639 243 0 0 0 chr3 138269306 138269333 -21330450 + (TAAA)n Simple_repeat Simple_repeat 1 27 0 5 1639 216 0 0 0 chr3 138269333 138269357 -21330426 + (GAAA)n Simple_repeat Simple_repeat 1 24 0 5 1639 279 71 0 0 chr3 138269997 138270039 -21329744 + (T)n Simple_repeat Simple_repeat 1 42 0 5 1639 207 321 111 0 chr3 138270039 138270120 -21329663 - MIRc SINE MIR -49 219 130 5 1639 829 217 173 15 chr3 138270169 138270444 -21329339 - L1MA7 LINE L1 -339 5973 5688 5 1639 1148 82 0 0 chr3 138270444 138270590 -21329193 - B1_Mm SINE Alu 0 147 2 5 1639 803 234 157 87 chr3 138270590 138270667 -21329116 - L1MA7 LINE L1 -625 5687 5594 5 1639 234 0 0 0 chr3 138270667 138270693 -21329090 + (TTTTA)n Simple_repeat Simple_repeat 3 28 0 5 1639 803 234 157 87 chr3 138270693 138270728 -21329055 - L1MA7 LINE L1 -719 5593 5559 5 1639 351 0 0 0 chr3 138273826 138273865 -21325918 + (TG)n Simple_repeat Simple_repeat 2 40 0 5 1639 317 266 0 0 chr3 138274060 138274124 -21325659 - ID4_ SINE ID -3 80 17 5 1639 855 152 0 0 chr3 138274222 138274347 -21325436 + B1_Mur4 SINE Alu 19 143 -7 5 1639 2023 220 65 32 chr3 138274393 138275039 -21324744 + Lx7 LINE L1 6917 7696 0 5 1639 600 27 0 0 chr3 138275339 138275413 -21324370 + (TG)n Simple_repeat Simple_repeat 1 74 0 5 1639 360 275 33 0 chr3 138277272 138277363 -21322420 - MLT1B LTR MaLR -3 387 294 5 1639 1194 124 27 67 chr3 138277351 138277575 -21322208 + URR1A DNA MER1_type 12 226 0 5 1639 808 298 47 27 chr3 138277575 138277868 -21321915 - MLT1B LTR MaLR -79 311 13 5 1639 837 132 52 0 chr3 138278477 138278613 -21321170 + B1_Mur4 SINE Alu 2 144 -6 5 1639 225 65 0 0 chr3 138279705 138279736 -21320047 + (TGAA)n Simple_repeat Simple_repeat 3 33 0 5 1639 704 228 7 33 chr3 138280176 138280326 -21319457 - B1_Mur1 SINE Alu -2 147 2 5 1639 21 0 0 0 chr3 138280334 138280355 -21319428 + AT_rich Low_complexity Low_complexity 1 21 0 5 1639 309 109 0 0 chr3 138280388 138280452 -21319331 - B2_Mm1t SINE B2 0 193 130 5 1639 1319 100 0 26 chr3 138280456 138280490 -21319293 - B2_Mm1t SINE B2 -3 190 161 5 1639 429 20 0 0 chr3 138280490 138280540 -21319243 + (TTTA)n Simple_repeat Simple_repeat 3 52 0 5 1639 1319 100 0 26 chr3 138280540 138280700 -21319083 - B2_Mm1t SINE B2 -33 160 1 5 1639 228 318 112 38 chr3 138280733 138280893 -21318890 - MIR SINE MIR -55 207 36 5 1640 350 122 0 0 chr3 138281009 138281058 -21318725 - B1_Mur2 SINE Alu -52 97 49 5 1640 2594 62 9 0 chr3 138281147 138281469 -21318314 - ORR1A2 LTR MaLR -2 325 1 5 1640 361 220 136 54 chr3 138281737 138281958 -21317825 + L1M5 LINE L1 3880 4118 -2028 5 1640 534 220 10 0 chr3 138282007 138282107 -21317676 + B3 SINE B2 1 101 -115 5 1640 276 206 27 68 chr3 138282179 138282252 -21317531 + ID4_ SINE ID 2 71 -12 5 1640 197 33 33 0 chr3 138282258 138282288 -21317495 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 5 1640 1126 98 11 11 chr3 138282356 138282531 -21317252 + B2_Mm2 SINE B2 1 175 -20 5 1640 360 0 0 0 chr3 138282591 138282631 -21317152 + (TTAA)n Simple_repeat Simple_repeat 3 42 0 5 1640 249 312 126 61 chr3 138282712 138283190 -21316593 + L1M5 LINE L1 4323 4831 -1315 5 1640 434 157 130 0 chr3 138283190 138283298 -21316485 - MTC LTR MaLR -287 134 13 5 1640 725 152 179 18 chr3 138283358 138283526 -21316257 + B2_Mm2 SINE B2 1 195 0 5 1640 245 260 197 8 chr3 138284138 138284270 -21315513 + MIR3 SINE MIR 40 196 -12 5 1640 2650 117 63 28 chr3 138284360 138284782 -21315001 + RLTR20C LTR ERVK 1 432 -102 5 1640 183 100 0 0 chr3 138284782 138284812 -21314971 + (TG)n Simple_repeat Simple_repeat 2 31 0 5 1640 2650 117 63 28 chr3 138284812 138284883 -21314900 + RLTR20C LTR ERVK 433 511 -23 5 1640 245 29 0 29 chr3 138285033 138285068 -21314715 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 5 1640 317 172 0 0 chr3 138285068 138285126 -21314657 - B1_Mur2 SINE Alu -3 146 89 5 1640 227 116 0 23 chr3 138285132 138285168 -21314615 - URR1B DNA MER1_type -15 210 176 5 1640 1682 206 86 35 chr3 138285168 138285631 -21314152 - RLTR19C LTR ERVK 0 506 20 5 1640 800 187 45 45 chr3 138285642 138285821 -21313962 - URR1B DNA MER1_type -46 179 1 5 1640 453 209 0 11 chr3 138285825 138285917 -21313866 - B1_Mur4 SINE Alu -59 91 1 5 1640 1328 67 0 6 chr3 138286574 138286755 -21313028 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 5 1640 789 147 66 0 chr3 138286756 138286892 -21312891 - B1_Mus2 SINE Alu 0 147 3 5 1640 492 32 0 0 chr3 138287441 138287503 -21312280 + (TA)n Simple_repeat Simple_repeat 1 62 0 5 1640 336 24 0 0 chr3 138287529 138287570 -21312213 + (CA)n Simple_repeat Simple_repeat 1 41 0 5 1640 3563 55 20 4 chr3 138287828 138288316 -21311467 - LTRIS2 LTR ERV1 0 564 69 5 1640 305 186 119 0 chr3 138288961 138289020 -21310763 + ID4_ SINE ID 3 68 -15 5 1640 679 334 106 79 chr3 138289874 138290525 -21309258 - Charlie25 DNA MER1_type -1043 1481 774 6 1640 1033 116 20 0 chr3 138290525 138290672 -21309111 + B1_Mur4 SINE Alu 1 150 0 6 1640 679 334 106 79 chr3 138290672 138291130 -21308653 - Charlie25 DNA MER1_type -1751 773 342 6 1640 225 296 39 88 chr3 138291921 138292063 -21307720 - PB1D10 SINE Alu 0 149 8 6 1640 25 51 0 0 chr3 138292172 138292211 -21307572 + AT_rich Low_complexity Low_complexity 1 39 0 6 1640 297 112 333 18 chr3 138292410 138292518 -21307265 - B2_Mm2 SINE B2 -7 188 47 6 1640 1180 109 23 6 chr3 138292550 138292725 -21307058 - B2_Mm1t SINE B2 -14 179 2 6 1640 354 219 57 0 chr3 138292725 138292830 -21306953 + L1MB8 LINE L1 5269 5379 -799 6 1640 460 256 39 39 chr3 138292846 138292976 -21306807 + ID_B1 SINE B4 93 222 -2 6 1640 369 340 118 18 chr3 138292979 138293629 -21306154 + L1MB8 LINE L1 5371 6100 -78 6 1640 243 0 0 0 chr3 138293843 138293870 -21305913 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 6 1640 1109 95 0 0 chr3 138293871 138294018 -21305765 - B1_Mus2 SINE Alu 0 147 1 6 1640 719 84 0 18 chr3 138294912 138295021 -21304762 + (TTTC)n Simple_repeat Simple_repeat 4 110 0 6 1640 501 228 26 9 chr3 138295184 138295299 -21304484 - PB1D7 SINE Alu 0 120 4 6 1640 333 256 87 97 chr3 138295299 138295491 -21304292 - MLT1C LTR MaLR -277 190 1 6 1640 700 255 0 0 chr3 138296297 138296450 -21303333 + RSINE1 SINE B4 3 155 -10 6 1640 299 397 107 0 chr3 138296561 138296785 -21302998 - MLT1J2 LTR MaLR -28 420 173 6 1640 589 173 14 0 chr3 138296975 138297095 -21302688 - ORR1C1 LTR MaLR -226 133 3 6 1640 430 179 24 0 chr3 138297104 138297188 -21302595 + ORR1C1 LTR MaLR 102 187 -197 6 1640 569 129 0 33 chr3 138297188 138297308 -21302475 + CT-rich Low_complexity Low_complexity 4 119 0 6 1640 941 213 40 0 chr3 138297309 138297511 -21302272 + ORR1C1 LTR MaLR 166 375 -3 6 1640 227 311 0 0 chr3 138297521 138297597 -21302186 - MIR SINE MIR -138 138 56 6 1640 362 301 115 12 chr3 138297764 138297929 -21301854 + MIR SINE MIR 23 204 -58 6 1640 496 253 51 22 chr3 138298300 138298478 -21301305 - B3A SINE B2 -15 183 1 6 1640 232 343 142 23 chr3 138299112 138299330 -21300453 + ORR1E LTR MaLR 8 251 -108 6 1640 318 239 21 64 chr3 138299357 138299451 -21300332 - B3 SINE B2 -105 90 1 6 1640 324 158 0 0 chr3 138299525 138299582 -21300201 + (CACAA)n Simple_repeat Simple_repeat 3 59 0 6 1640 1046 117 0 0 chr3 138299885 138300039 -21299744 + B2_Mm2 SINE B2 1 154 -41 6 1640 338 0 0 23 chr3 138300040 138300083 -21299700 + (TAAA)n Simple_repeat Simple_repeat 4 45 0 6 1640 225 0 0 0 chr3 138300231 138300256 -21299527 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 6 1640 1028 83 0 0 chr3 138300258 138300390 -21299393 - B1_Mus2 SINE Alu -12 135 4 6 1640 474 251 25 9 chr3 138301206 138301328 -21298455 + B1F2 SINE Alu 4 117 0 6 1640 27 0 0 0 chr3 138301569 138301596 -21298187 + AT_rich Low_complexity Low_complexity 1 27 0 6 1640 396 246 0 42 chr3 138301601 138301720 -21298063 - B3A SINE B2 -83 115 2 6 1640 767 262 33 40 chr3 138302153 138302427 -21297356 + B4A SINE B4 20 291 -1 6 1640 450 131 53 18 chr3 138302455 138302626 -21297157 + (CA)n Simple_repeat Simple_repeat 1 177 0 6 1640 324 158 53 0 chr3 138302644 138302758 -21297025 + (CA)n Simple_repeat Simple_repeat 2 121 0 6 1640 265 284 37 0 chr3 138302910 138303019 -21296764 + L1M5 LINE L1 5370 5482 -712 6 1640 775 262 23 42 chr3 138303550 138303765 -21296018 + B3 SINE B2 2 212 -4 6 1640 286 243 90 80 chr3 138304196 138304308 -21295475 - Zaphod DNA Tip100 -180 3851 3732 6 1640 883 228 69 0 chr3 138304308 138304510 -21295273 + B3 SINE B2 1 216 0 6 1640 286 243 90 80 chr3 138304510 138304585 -21295198 - Zaphod DNA Tip100 -300 3731 3662 6 1640 379 230 56 0 chr3 138304990 138305116 -21294667 - Charlie1a DNA MER1_type -5 1450 1318 6 1640 758 244 6 29 chr3 138305155 138305328 -21294455 - B3A SINE B2 -29 169 1 6 1640 296 281 0 8 chr3 138305340 138305469 -21294314 + (TA)n Simple_repeat Simple_repeat 1 128 0 6 1640 507 332 44 11 chr3 138305632 138305906 -21293877 - Zaphod DNA Tip100 -3405 626 344 6 1640 258 259 17 0 chr3 138306050 138306108 -21293675 + CT-rich Low_complexity Low_complexity 2 60 0 6 1640 202 95 0 45 chr3 138306328 138306372 -21293411 + (TTTTC)n Simple_repeat Simple_repeat 4 45 0 6 1640 484 231 9 9 chr3 138306488 138306597 -21293186 - ID_B1 SINE B4 -24 200 92 6 1640 216 167 0 0 chr3 138307563 138307599 -21292184 + (CTGGGG)n Simple_repeat Simple_repeat 1 36 0 6 1640 605 181 16 41 chr3 138307959 138308000 -21291783 - PB1D9 SINE Alu -1 119 82 6 1640 792 21 0 0 chr3 138308000 138308094 -21291689 + (TC)n Simple_repeat Simple_repeat 1 94 0 6 1640 605 181 16 41 chr3 138308094 138308173 -21291610 - PB1D9 SINE Alu -39 81 2 6 1640 433 319 30 0 chr3 138309088 138309254 -21290529 + C-rich Low_complexity Low_complexity 5 175 0 6 1640 426 180 0 73 chr3 138309489 138309585 -21290198 - PB1D10 SINE Alu -3 114 26 6 1640 263 366 45 25 chr3 138310029 138310186 -21289597 + MLT1A0 LTR MaLR 27 186 -179 6 1640 1911 147 34 76 chr3 138310265 138310647 -21289136 + ORR1C1 LTR MaLR 1 366 -12 6 1640 864 103 0 7 chr3 138311408 138311545 -21288238 + URR1B DNA MER1_type 88 223 -2 6 1640 180 0 0 0 chr3 138312268 138312288 -21287495 + (CAA)n Simple_repeat Simple_repeat 2 21 0 6 1640 1259 261 118 35 chr3 138313038 138313557 -21286226 - L1MA8 LINE L1 -114 6177 5616 6 1640 1219 68 0 0 chr3 138313599 138313746 -21286037 - B1_Mm SINE Alu 0 147 1 6 1640 1840 102 3 63 chr3 138313809 138314112 -21285671 + ORR1A2 LTR MaLR 1 285 -42 6 1640 1170 82 0 0 chr3 138314113 138314260 -21285523 + B1_Mm SINE Alu 1 147 0 6 1640 329 104 0 0 chr3 138314292 138314340 -21285443 + ORR1A2 LTR MaLR 328 375 -9 6 1640 501 276 16 82 chr3 138314334 138314579 -21285204 - MTEb LTR MaLR -93 286 58 6 1640 459 284 0 81 chr3 138315713 138315874 -21283909 - B3A SINE B2 -1 197 50 6 1640 452 251 68 34 chr3 138316318 138316495 -21283288 + RLTR41 LTR ERV1 264 446 0 6 1640 409 291 36 87 chr3 138317432 138317628 -21282155 + MIRb SINE MIR 27 212 -56 6 1640 802 259 49 58 chr3 138318581 138318929 -21280854 - RMER5 LTR ERV1 -17 517 173 6 1640 2942 105 68 57 chr3 138318964 138319477 -21280306 + MURVY-LTR LTR ERV1 1 519 0 6 1640 256 274 14 0 chr3 138319548 138319621 -21280162 - RMER5 LTR ERV1 -421 113 40 6 1640 1240 173 4 21 chr3 138319799 138320041 -21279742 - RMER5 LTR ERV1 0 534 297 6 1640 1997 130 47 6 chr3 138320041 138320381 -21279402 - MTC LTR MaLR 0 421 68 6 1640 830 157 0 0 chr3 138320407 138320541 -21279242 - B1_Mur3 SINE Alu -7 142 9 6 1640 397 192 0 0 chr3 138320578 138320651 -21279132 - MTC LTR MaLR -340 81 9 6 1640 1427 171 14 11 chr3 138320660 138320943 -21278840 - RMER5 LTR ERV1 -234 300 17 6 1640 21 0 0 0 chr3 138321187 138321208 -21278575 + AT_rich Low_complexity Low_complexity 1 21 0 6 1640 2240 160 47 50 chr3 138321227 138321288 -21278495 - MTC LTR MaLR 0 421 379 6 1640 1334 115 5 0 chr3 138321288 138321480 -21278303 + B2_Mm1t SINE B2 1 193 0 6 1640 2240 160 47 50 chr3 138321480 138321840 -21277943 - MTC LTR MaLR -43 378 1 6 1640 3140 60 190 2 chr3 138321959 138322396 -21277387 + MURVY-LTR LTR ERV1 1 519 0 6 1640 2946 149 11 23 chr3 138322600 138323073 -21276710 + Lx5 LINE L1 6509 6975 -75 6 1640 990 225 123 44 chr3 138323086 138323604 -21276179 - RMER20B LTR ERVK -36 591 33 6 1640 213 39 0 0 chr3 138323670 138323696 -21276087 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 6 1640 362 207 122 0 chr3 138323750 138323832 -21275951 + PB1D10 SINE Alu 21 112 -5 6 1640 225 0 0 0 chr3 138323834 138323859 -21275924 + (CAAAC)n Simple_repeat Simple_repeat 2 26 0 6 1640 356 331 8 32 chr3 138324177 138324302 -21275481 + ID_B1 SINE B4 82 203 -21 6 1640 2858 278 90 31 chr3 138324635 138325616 -21274167 - Lx9 LINE L1 -344 7300 6262 6 1640 2446 236 34 108 chr3 138326291 138326360 -21273423 - L1_Rod LINE L1 -1103 4744 4677 6 1640 2254 95 69 0 chr3 138326360 138326665 -21273118 + ORR1A2 LTR MaLR 2 327 0 6 1640 2446 236 34 108 chr3 138326665 138327350 -21272433 - L1_Rod LINE L1 -1171 4676 4054 6 1640 1885 216 65 169 chr3 138327350 138328029 -21271754 + RMER19C LTR ERVK 4 611 0 6 1640 2446 236 34 108 chr3 138328029 138328241 -21271542 - L1_Rod LINE L1 -1794 4053 3849 6 1640 2931 251 135 19 chr3 138328252 138329300 -21270483 - L1_Rod LINE L1 -3365 2482 1303 6 1640 183 42 0 0 chr3 138329300 138329324 -21270459 + (TTG)n Simple_repeat Simple_repeat 1 24 0 6 1640 2931 264 97 27 chr3 138329324 138329706 -21270077 - L1_Rod LINE L1 -6306 1302 901 6 1640 260 341 0 7 chr3 138330148 138330284 -21269499 - L1_Rod LINE L1 -6726 882 748 6 1640 180 152 0 0 chr3 138330503 138330536 -21269247 + (TTG)n Simple_repeat Simple_repeat 2 34 0 6 1640 333 0 0 0 chr3 138330540 138330577 -21269206 + (TC)n Simple_repeat Simple_repeat 2 38 0 6 1640 288 0 0 0 chr3 138330577 138330608 -21269175 + (TG)n Simple_repeat Simple_repeat 1 32 0 6 1640 624 292 54 0 chr3 138330614 138330761 -21269022 - B3A SINE B2 -41 157 3 6 1640 231 260 93 28 chr3 138330920 138331027 -21268756 - LTR48 LTR ERV1 -178 609 496 6 1640 211 172 0 33 chr3 138331120 138331180 -21268603 + A-rich Low_complexity Low_complexity 1 58 0 6 1640 998 242 87 27 chr3 138332451 138332779 -21267004 + MTD LTR MaLR 41 419 0 6 1640 719 133 0 0 chr3 138333120 138333233 -21266550 + B1_Mus1 SINE Alu 34 146 -2 6 1640 564 271 97 41 chr3 138333453 138333722 -21266061 + B4 SINE B4 9 292 0 6 1640 270 229 71 12 chr3 138334477 138334561 -21265222 + PB1D10 SINE Alu 9 97 -20 6 1640 1338 189 112 27 chr3 138334658 138335099 -21264684 - RMER4B LTR ERVK -67 518 1 6 1640 3945 189 28 62 chr3 138335102 138336125 -21263658 - MYSERV6-int LTR ERVK -54 8905 8093 6 1640 990 52 72 22 chr3 138336139 138336277 -21263506 - B1_Mm SINE Alu 0 147 3 6 1640 811 245 320 7 chr3 138336338 138336609 -21263174 - MurERV4-int LTR ERVK -4820 440 85 6 1640 909 128 21 75 chr3 138336710 138336896 -21262887 - B2_Mm2 SINE B2 -18 177 2 6 1640 295 239 95 32 chr3 138336954 138337049 -21262734 + MLT1B LTR MaLR 76 176 -214 6 1640 453 81 0 0 chr3 138337054 138337116 -21262667 + (TC)n Simple_repeat Simple_repeat 2 63 0 6 1640 297 0 0 0 chr3 138337116 138337149 -21262634 + (CA)n Simple_repeat Simple_repeat 1 33 0 6 1640 506 269 77 103 chr3 138337863 138338058 -21261725 + ID_B1 SINE B4 3 192 -32 6 1640 720 114 14 57 chr3 138338699 138338808 -21260975 - B1_Mur4 SINE Alu -11 139 36 6 1640 675 219 176 61 chr3 138338808 138339138 -21260645 - RLTR9A LTR ERVK 0 368 1 6 1640 720 114 14 57 chr3 138339138 138339168 -21260615 - B1_Mur4 SINE Alu -115 35 6 6 1640 3239 100 84 121 chr3 138339635 138340362 -21259421 - RMER6A LTR ERVK 0 756 57 7 1640 455 247 0 0 chr3 138340973 138341066 -21258717 - B3A SINE B2 -93 105 13 7 1640 319 306 77 50 chr3 138341230 138341491 -21258292 - L3b LINE CR1 -203 279 12 7 1640 200 163 23 0 chr3 138341801 138341844 -21257939 + CT-rich Low_complexity Low_complexity 1 44 0 7 1640 322 188 16 0 chr3 138342382 138342446 -21257337 - ORR1D1 LTR MaLR 0 374 310 7 1640 1153 62 7 0 chr3 138342452 138342598 -21257185 + B1_Mm SINE Alu 1 147 0 7 1640 251 28 28 0 chr3 138342601 138342637 -21257146 + (CAAAA)n Simple_repeat Simple_repeat 2 38 0 7 1640 722 197 6 6 chr3 138342637 138342795 -21256988 - ORR1D1 LTR MaLR -55 329 172 7 1640 274 118 29 29 chr3 138342795 138342865 -21256918 + (CAGA)n Simple_repeat Simple_repeat 3 72 0 7 1640 874 157 67 6 chr3 138342865 138343044 -21256739 - ORR1D1 LTR MaLR -184 190 1 7 1640 345 125 0 0 chr3 138343147 138343203 -21256580 + (T)n Simple_repeat Simple_repeat 1 56 0 7 1640 814 189 7 0 chr3 138343219 138343367 -21256416 + B1F2 SINE Alu 1 149 0 7 1640 306 0 0 0 chr3 138343390 138343424 -21256359 + (TAA)n Simple_repeat Simple_repeat 1 34 0 7 1640 413 301 44 0 chr3 138344240 138344353 -21255430 - RSINE1 SINE B4 -44 121 4 7 1640 795 159 0 24 chr3 138344793 138344854 -21254929 + polypyrimidine Low_complexity Low_complexity 105 165 0 7 1640 1082 95 6 16 chr3 138344854 138345036 -21254747 + (TCC)n Simple_repeat Simple_repeat 1 180 0 7 1640 795 159 0 24 chr3 138345036 138345049 -21254734 + polypyrimidine Low_complexity Low_complexity 93 104 0 7 1640 1056 84 5 27 chr3 138345049 138345233 -21254550 + (TCC)n Simple_repeat Simple_repeat 1 180 0 7 1640 795 159 0 24 chr3 138345233 138345325 -21254458 + polypyrimidine Low_complexity Low_complexity 2 92 0 7 1640 799 215 0 0 chr3 138345327 138345471 -21254312 - B1_Mus1 SINE Alu 0 148 5 7 1640 191 388 60 18 chr3 138345885 138346053 -21253730 + MIRb SINE MIR 80 254 -14 7 1640 2865 36 7 142 chr3 138346061 138346510 -21253273 + RLTR10 LTR ERVK 1 388 -2 7 1640 17194 25 3 4 chr3 138346521 138348467 -21251316 + RLTR10-int LTR ERVK 41 1984 -3 7 1640 2790 36 7 170 chr3 138348469 138348933 -21250850 + RLTR10 LTR ERVK 1 388 -2 7 1640 330 308 29 9 chr3 138349059 138349164 -21250619 - PB1D7 SINE Alu 0 120 14 7 1640 195 69 0 0 chr3 138349348 138349377 -21250406 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 7 1640 656 229 40 190 chr3 138349401 138349654 -21250129 + B3 SINE B2 2 216 0 7 1640 274 236 0 0 chr3 138349713 138349768 -21250015 + ID4 SINE ID 3 57 -26 7 1640 298 179 45 0 chr3 138350666 138350733 -21249050 + L1MB3 LINE L1 85 154 -6230 7 1640 1101 178 0 32 chr3 138350844 138351065 -21248718 - URR1B DNA MER1_type -11 214 1 7 1640 365 239 15 89 chr3 138351406 138351608 -21248175 + L1MB3 LINE L1 1013 1199 -5185 7 1640 3716 176 42 19 chr3 138351675 138352249 -21247534 + RMER1A Other Other 311 880 -150 7 1640 327 25 0 0 chr3 138352249 138352289 -21247494 + (TTG)n Simple_repeat Simple_repeat 3 42 0 7 1640 3716 176 42 19 chr3 138352289 138352401 -21247382 + RMER1A Other Other 881 1013 -17 7 1640 252 0 0 0 chr3 138352405 138352433 -21247350 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 7 1640 425 264 9 0 chr3 138352495 138352601 -21247182 + ID_B1 SINE B4 107 213 -11 7 1640 370 215 50 38 chr3 138352601 138352618 -21247165 + B1F SINE Alu 56 149 0 7 1640 535 259 0 17 chr3 138352659 138352777 -21247006 + RSINE1 SINE B4 3 118 -47 7 1640 396 0 0 0 chr3 138352817 138352861 -21246922 + (CA)n Simple_repeat Simple_repeat 1 44 0 7 1640 2311 296 68 110 chr3 138352944 138355119 -21244664 + L1MB3 LINE L1 1956 4039 -2340 7 1640 754 199 219 96 chr3 138355119 138355306 -21244477 - ORR1D1 LTR MaLR 0 374 138 7 1640 612 40 0 0 chr3 138355306 138355381 -21244402 + (GA)n Simple_repeat Simple_repeat 1 75 0 7 1640 754 199 219 96 chr3 138355381 138355526 -21244257 - ORR1D1 LTR MaLR -237 137 1 7 1640 2311 264 50 90 chr3 138355526 138356216 -21243567 + L1MB3 LINE L1 4036 4681 -1695 7 1640 4981 176 14 7 chr3 138356216 138357084 -21242699 + Lx5 LINE L1 6177 7050 0 7 1640 2311 264 50 90 chr3 138357084 138357199 -21242584 + L1MB3 LINE L1 4682 4792 -1584 7 1640 1214 264 48 16 chr3 138357223 138357535 -21242248 - ORR1E LTR MaLR -35 324 3 7 1640 1085 304 86 53 chr3 138357537 138358179 -21241604 + L1MB3 LINE L1 4791 5453 -923 7 1640 403 102 57 0 chr3 138358185 138358273 -21241510 + (TA)n Simple_repeat Simple_repeat 1 93 0 7 1640 2168 155 18 48 chr3 138358273 138358707 -21241076 - MTC LTR MaLR 0 421 1 7 1640 216 97 0 0 chr3 138358907 138358938 -21240845 + (GGAGA)n Simple_repeat Simple_repeat 5 35 0 7 1640 767 280 67 36 chr3 138358942 138359301 -21240482 + L1MB3 LINE L1 5731 6100 -319 7 1640 334 296 26 90 chr3 138359386 138359542 -21240241 - Charlie13a DNA Charlie -1076 438 293 7 1640 659 243 62 21 chr3 138359771 138359964 -21239819 - B3 SINE B2 -11 205 5 7 1640 1983 167 5 48 chr3 138360213 138360585 -21239198 - ORR1B2 LTR MaLR -8 359 4 7 1640 247 367 19 26 chr3 138360599 138360753 -21239030 - L2c LINE L2 -288 3099 2947 7 1640 304 264 126 0 chr3 138360804 138360891 -21238892 + MTE2b LTR MaLR 1 98 -281 7 1640 269 182 17 52 chr3 138360874 138360932 -21238851 + MTE2b LTR MaLR 43 98 -281 7 1640 330 26 0 0 chr3 138361000 138361039 -21238744 + (CA)n Simple_repeat Simple_repeat 2 40 0 7 1640 646 146 9 32 chr3 138361057 138361188 -21238595 - B2_Mm2 SINE B2 -68 125 3 7 1640 475 259 87 54 chr3 138361195 138361379 -21238404 + MTE2b LTR MaLR 151 340 -39 7 1640 1001 287 76 6 chr3 138361542 138361885 -21237898 + Lx8 LINE L1 7101 7467 -6 7 1640 415 244 16 40 chr3 138361942 138362066 -21237717 - ORR1E LTR MaLR -162 197 77 7 1640 1117 249 101 118 chr3 138362141 138362743 -21237040 + Lx9 LINE L1 7052 7643 -1 7 1640 201 74 0 0 chr3 138362780 138362807 -21236976 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 7 1640 281 364 65 43 chr3 138363462 138363692 -21236091 + MLT1G LTR MaLR 26 260 -331 7 1640 257 197 15 0 chr3 138364025 138364091 -21235692 + (TGGA)n Simple_repeat Simple_repeat 4 70 0 7 1640 494 202 28 46 chr3 138364543 138364652 -21235131 - B3A SINE B2 -73 125 19 7 1640 605 254 7 0 chr3 138364735 138364877 -21234906 - L1MA6 LINE L1 0 6300 6158 7 1640 620 241 36 24 chr3 138364891 138365057 -21234726 + L1MA8 LINE L1 5852 6019 -272 7 1640 238 254 18 0 chr3 138365126 138365181 -21234602 - B1_Mur4 SINE Alu -86 64 9 7 1640 619 250 144 0 chr3 138365824 138366012 -21233771 + B3 SINE B2 2 216 0 7 1640 270 228 148 30 chr3 138368091 138368251 -21231532 - MIR SINE MIR -74 194 16 7 1640 904 291 12 8 chr3 138369266 138369522 -21230261 - MTE2b LTR MaLR -4 375 119 7 1640 473 153 0 0 chr3 138370333 138370405 -21229378 + tRNA-Lys-AAG tRNA tRNA 5 76 0 7 1640 188 206 0 0 chr3 138370744 138370778 -21229005 + MIR SINE MIR 115 148 -114 7 1640 3389 35 5 2 chr3 138370780 138371179 -21228604 - MTB LTR MaLR 0 400 1 7 1640 180 325 62 12 chr3 138371272 138371353 -21228430 - L2c LINE L2 -202 3185 3101 7 1640 445 259 116 10 chr3 138372149 138372351 -21227432 - MLT1F2 LTR MaLR 0 680 399 7 1640 296 247 102 51 chr3 138372389 138372487 -21227296 - MTE2b LTR MaLR -255 104 2 7 1640 815 243 21 5 chr3 138372492 138372678 -21227105 - ID_B1 SINE B4 -35 189 1 7 1640 540 0 0 0 chr3 138372767 138372827 -21226956 + (TA)n Simple_repeat Simple_repeat 1 60 0 7 1640 284 0 28 0 chr3 138373863 138373899 -21225884 + (TA)n Simple_repeat Simple_repeat 2 38 0 7 1640 515 274 139 25 chr3 138374116 138374397 -21225386 + L1MB7 LINE L1 5502 5814 -370 7 1640 521 301 87 50 chr3 138374408 138374657 -21225126 + L1MA4 LINE L1 5538 5829 -471 7 1640 1118 119 11 22 chr3 138374657 138374837 -21224946 + B2_Mm2 SINE B2 1 178 -17 7 1640 521 282 82 26 chr3 138374837 138374940 -21224843 + L1MA4 LINE L1 5830 5937 -363 7 1640 399 41 0 0 chr3 138375739 138375788 -21223995 + (CA)n Simple_repeat Simple_repeat 1 49 0 7 1640 523 272 74 45 chr3 138376281 138376550 -21223233 + L1MB7 LINE L1 5812 6088 -96 7 1640 411 21 0 0 chr3 138378005 138378053 -21221730 + (GA)n Simple_repeat Simple_repeat 1 48 0 7 1640 288 349 86 11 chr3 138378079 138378254 -21221529 - MIRb SINE MIR -52 216 30 7 1640 246 270 33 22 chr3 138378273 138378364 -21221419 - B1F1 SINE Alu -47 102 11 7 1640 215 219 0 0 chr3 138379114 138379155 -21220628 + (CAT)n Simple_repeat Simple_repeat 3 43 0 7 1640 386 313 57 15 chr3 138379330 138379543 -21220240 + MLT1D LTR MaLR 20 239 -388 7 1640 302 343 48 43 chr3 138380187 138380373 -21219410 + Arthur1B DNA Tip100 2 188 -1037 7 1640 407 252 206 97 chr3 138380646 138381006 -21218777 + Arthur1B DNA Tip100 622 1020 -205 7 1640 274 263 40 10 chr3 138381035 138381135 -21218648 - MLT1A1 LTR MaLR -2 406 304 7 1640 268 269 75 11 chr3 138381262 138381356 -21218427 - MLT1A1 LTR MaLR -308 100 1 7 1640 218 227 200 57 chr3 138381447 138381517 -21218266 - ID4_ SINE ID -1 82 3 7 1640 564 261 115 14 chr3 138381761 138381979 -21217804 - MLT1C LTR MaLR -5 462 223 7 1640 378 0 0 0 chr3 138381992 138382034 -21217749 + (TG)n Simple_repeat Simple_repeat 1 42 0 7 1640 291 222 56 0 chr3 138382202 138382274 -21217509 - PB1D7 SINE Alu -8 112 37 7 1640 373 296 92 6 chr3 138382296 138382459 -21217324 - MLT1C LTR MaLR -283 184 8 7 1640 645 219 61 14 chr3 138382565 138382713 -21217070 + B3A SINE B2 3 157 -41 7 1640 360 0 0 0 chr3 138382714 138382754 -21217029 + (CA)n Simple_repeat Simple_repeat 2 41 0 7 1640 561 259 30 0 chr3 138384472 138384607 -21215176 - B1_Mur1 SINE Alu -10 139 1 7 1640 345 311 29 58 chr3 138385008 138385213 -21214570 + RLTR42-int LTR ERVK 1190 1388 -4134 7 1640 684 190 0 0 chr3 138385584 138385705 -21214078 - B2_Mm2 SINE B2 -73 122 2 7 1640 2737 268 102 6 chr3 138385705 138385946 -21213837 - Lx8 LINE L1 -223 7250 6970 7 1640 432 0 0 0 chr3 138385946 138385994 -21213789 + (TGG)n Simple_repeat Simple_repeat 1 48 0 7 1640 2737 268 102 6 chr3 138385994 138386458 -21213325 - Lx8 LINE L1 -504 6969 6478 7 1640 22 0 0 0 chr3 138386764 138386786 -21212997 + AT_rich Low_complexity Low_complexity 1 22 0 7 1640 330 314 219 12 chr3 138387029 138387445 -21212338 + L2 LINE L2 2113 2614 -805 7 1640 469 254 8 26 chr3 138387463 138387580 -21212203 - PB1D10 SINE Alu 0 117 3 7 1640 501 189 65 9 chr3 138388027 138388134 -21211649 - ID_B1 SINE B4 -8 216 104 7 1640 201 367 60 50 chr3 138388247 138388417 -21211366 + L2 LINE L2 2859 3033 -386 7 1640 3420 26 13 0 chr3 138388417 138388808 -21210975 + MTA_Mm LTR MaLR 1 396 0 7 1640 201 367 60 50 chr3 138388808 138388855 -21210928 + L2 LINE L2 3034 3078 -341 7 1640 1895 221 22 10 chr3 138389177 138389589 -21210194 + MTD LTR MaLR 1 417 -2 7 1640 306 0 0 0 chr3 138390884 138390918 -21208865 + (TG)n Simple_repeat Simple_repeat 2 35 0 7 1640 977 182 11 0 chr3 138391133 138391309 -21208474 + MTC LTR MaLR 6 183 -238 7 1640 206 137 62 10 chr3 138391329 138391425 -21208358 + (TA)n Simple_repeat Simple_repeat 1 101 0 7 1640 1165 108 189 10 chr3 138391426 138391622 -21208161 + MTC LTR MaLR 191 421 0 7 1640 355 264 0 83 chr3 138393621 138393741 -21206042 + PB1D10 SINE Alu 1 110 -7 7 1640 973 251 61 32 chr3 138394436 138394782 -21205001 - L1MB4 LINE L1 -8 6172 5817 8 1640 461 314 67 64 chr3 138394784 138395066 -21204717 + B4 SINE B4 10 292 0 8 1640 320 122 0 0 chr3 138395086 138395135 -21204648 + HAL1-3A_ME LINE L1 1975 2023 -835 8 1640 501 181 0 0 chr3 138395139 138395272 -21204511 + (CA)n Simple_repeat Simple_repeat 2 134 0 8 1640 261 128 0 0 chr3 138395283 138395330 -21204453 + (CA)n Simple_repeat Simple_repeat 2 48 0 8 1640 478 282 132 104 chr3 138395415 138395779 -21204004 - MTD LTR MaLR -5 374 1 8 1640 2592 188 50 22 chr3 138395783 138396328 -21203455 - RLTR12A LTR ERVK -8 560 1 8 1640 225 340 0 70 chr3 138396910 138397024 -21202759 - PB1D10 SINE Alu -11 106 1 8 1640 768 212 89 25 chr3 138397199 138397402 -21202381 - B3 SINE B2 0 216 1 8 1640 324 0 0 0 chr3 138398258 138398294 -21201489 + (TG)n Simple_repeat Simple_repeat 2 37 0 8 1640 386 329 12 42 chr3 138398347 138398515 -21201268 - RSINE1 SINE B4 0 165 3 8 1640 1390 204 58 88 chr3 138399363 138399794 -21199989 - MTD LTR MaLR 0 419 2 8 1640 198 0 0 0 chr3 138400105 138400127 -21199656 + (A)n Simple_repeat Simple_repeat 1 22 0 8 1640 186 43 0 0 chr3 138400626 138400649 -21199134 + (TA)n Simple_repeat Simple_repeat 1 23 0 8 1640 1765 152 152 19 chr3 138401428 138401796 -21197987 + MTD LTR MaLR 1 417 -2 8 1640 271 221 45 34 chr3 138401850 138401939 -21197844 - L1MC4a LINE L1 -1950 5932 5843 8 1640 333 282 89 27 chr3 138402377 138402523 -21197260 - L1MC4a LINE L1 -403 5721 5567 8 1640 414 155 214 10 chr3 138402673 138402771 -21197012 - PB1D9 SINE Alu -1 119 2 8 1640 208 0 62 0 chr3 138402904 138402936 -21196847 + (TTTTTG)n Simple_repeat Simple_repeat 2 35 0 8 1640 586 294 14 9 chr3 138402977 138403140 -21196643 - ID_B1 SINE B4 -47 245 78 8 1640 1084 281 36 8 chr3 138403188 138403547 -21196236 + L1MC1 LINE L1 5893 6261 -72 8 1640 194 250 113 19 chr3 138404069 138404122 -21195661 + MER5A DNA MER1_type 41 98 -91 8 1640 285 29 0 0 chr3 138404788 138404822 -21194961 + (TG)n Simple_repeat Simple_repeat 2 35 0 8 1640 234 200 36 36 chr3 138405155 138405238 -21194545 + (CGGG)n Simple_repeat Simple_repeat 1 83 0 8 1640 230 81 0 26 chr3 138405869 138405907 -21193876 + (TTTC)n Simple_repeat Simple_repeat 3 39 0 8 1640 227 29 0 54 chr3 138406655 138406692 -21193091 + (TTGG)n Simple_repeat Simple_repeat 4 38 0 8 1640 209 108 27 0 chr3 138407197 138407234 -21192549 + (TTTC)n Simple_repeat Simple_repeat 3 40 0 8 1640 281 301 67 19 chr3 138409046 138409151 -21190632 - MLT1H1 LTR MaLR -2 553 444 8 1640 2031 162 94 16 chr3 138409443 138409826 -21189957 + MTC LTR MaLR 1 413 -8 8 1640 21 36 0 0 chr3 138410663 138410691 -21189092 + AT_rich Low_complexity Low_complexity 1 28 0 8 1640 219 209 23 0 chr3 138411531 138411574 -21188209 + L2c LINE L2 3342 3385 -2 8 1640 28 0 0 0 chr3 138411764 138411792 -21187991 + AT_rich Low_complexity Low_complexity 1 28 0 8 1640 918 172 201 0 chr3 138411792 138411961 -21187822 - B3 SINE B2 -12 204 2 8 25 1140 88 0 0 chr3 138412013 138412160 -21187623 - B1_Mus1 SINE Alu 0 148 2 8 1641 371 254 68 36 chr3 138412786 138412946 -21186837 + MTEb LTR MaLR 199 371 -8 8 1641 5561 132 50 30 chr3 138412975 138413945 -21185838 - Lx4B LINE L1 -7 7051 6062 8 1641 203 167 0 0 chr3 138414468 138414504 -21185279 + MIRc SINE MIR 193 228 -40 8 1641 255 340 108 7 chr3 138414511 138414659 -21185124 - L3 LINE CR1 -550 3939 3777 8 1641 819 57 0 0 chr3 138414842 138414947 -21184836 + (TCCC)n Simple_repeat Simple_repeat 1 105 0 8 1641 639 202 0 23 chr3 138415394 138415571 -21184212 + GA-rich Low_complexity Low_complexity 1 173 0 8 1641 759 179 0 16 chr3 138415582 138415764 -21184019 + GA-rich Low_complexity Low_complexity 2 180 0 8 1641 785 11 0 11 chr3 138416953 138417048 -21182735 + (TTTCC)n Simple_repeat Simple_repeat 3 96 0 8 1641 1479 53 5 5 chr3 138417841 138418031 -21181752 - B2_Mm1a SINE B2 -3 190 1 8 1641 383 257 26 34 chr3 138418097 138418214 -21181569 - PB1D10 SINE Alu -1 116 1 8 1641 190 266 98 37 chr3 138418352 138418434 -21181349 + MIR SINE MIR 70 156 -106 8 1641 741 196 0 15 chr3 138418565 138418700 -21181083 - B1_Mus1 SINE Alu -8 140 8 8 1641 1447 60 38 0 chr3 138418716 138418900 -21180883 - B2_Mm2 SINE B2 -3 192 2 8 1641 274 321 94 0 chr3 138419272 138419378 -21180405 - ORR1E LTR MaLR -3 356 241 8 1641 238 160 160 0 chr3 138419470 138419520 -21180263 - ORR1E LTR MaLR -321 58 1 8 1641 180 0 0 0 chr3 138419537 138419557 -21180226 + (T)n Simple_repeat Simple_repeat 1 20 0 8 1641 471 35 0 0 chr3 138419783 138419840 -21179943 + (CA)n Simple_repeat Simple_repeat 1 57 0 8 1641 346 271 142 41 chr3 138420591 138420810 -21178973 - MER113 DNA MER1_type -212 309 69 8 1641 216 149 0 0 chr3 138421399 138421446 -21178337 + (TCCA)n Simple_repeat Simple_repeat 1 47 0 8 1641 924 100 0 48 chr3 138421461 138421650 -21178133 + (TCCA)n Simple_repeat Simple_repeat 1 180 0 8 1641 591 120 15 22 chr3 138421662 138421798 -21177985 + (TCCA)n Simple_repeat Simple_repeat 1 135 0 8 1641 446 240 99 10 chr3 138422860 138422961 -21176822 - PB1D7 SINE Alu -1 119 10 8 1641 243 304 0 0 chr3 138422911 138422967 -21176816 - B4A SINE B4 -148 144 89 8 1641 190 234 21 0 chr3 138424352 138424399 -21175384 + MIR SINE MIR 41 88 -174 8 1641 853 251 46 101 chr3 138424754 138425060 -21174723 - B4 SINE B4 0 292 4 8 1641 22 56 0 0 chr3 138425167 138425203 -21174580 + AT_rich Low_complexity Low_complexity 1 36 0 8 1641 595 269 159 29 chr3 138425934 138426210 -21173573 + LTR40c LTR ERVL 83 394 -71 8 1641 363 136 0 0 chr3 138426212 138426271 -21173512 + (TTCTCC)n Simple_repeat Simple_repeat 3 61 0 8 1641 1169 48 0 20 chr3 138426273 138426422 -21173361 - B1_Mus2 SINE Alu -1 146 1 8 1641 225 0 0 0 chr3 138428084 138428109 -21171674 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 8 1641 698 222 0 0 chr3 138428296 138428431 -21171352 - B1_Mur2 SINE Alu -12 137 3 8 1641 279 0 0 0 chr3 138428887 138428918 -21170865 + (TCTG)n Simple_repeat Simple_repeat 2 32 0 8 1641 333 0 0 0 chr3 138429476 138429513 -21170270 + (CA)n Simple_repeat Simple_repeat 1 37 0 8 1641 492 143 0 0 chr3 138430412 138430496 -21169287 + (TCCCC)n Simple_repeat Simple_repeat 2 85 0 8 1641 710 155 9 0 chr3 138430508 138430624 -21169159 - B1_Mur4 SINE Alu -25 125 9 8 1641 286 333 77 13 chr3 138431186 138431341 -21168442 - RSINE1 SINE B4 0 165 1 8 1641 675 67 0 0 chr3 138432218 138432307 -21167476 + (TTTC)n Simple_repeat Simple_repeat 4 92 0 8 1641 315 0 0 0 chr3 138433059 138433094 -21166689 + (TG)n Simple_repeat Simple_repeat 1 35 0 8 1641 492 233 0 65 chr3 138434371 138434495 -21165288 + PB1D10 SINE Alu 2 117 0 8 1641 1045 282 21 18 chr3 138435301 138435566 -21164217 + B4A SINE B4 2 270 -22 8 1641 288 0 0 0 chr3 138435566 138435598 -21164185 + (CA)n Simple_repeat Simple_repeat 2 33 0 8 1641 1045 282 21 18 chr3 138435598 138435617 -21164166 + B4A SINE B4 271 287 -5 8 1641 269 51 26 0 chr3 138435681 138435720 -21164063 + (TTCA)n Simple_repeat Simple_repeat 1 40 0 8 1641 21 0 0 0 chr3 138435731 138435752 -21164031 + AT_rich Low_complexity Low_complexity 1 21 0 8 1641 26 50 0 0 chr3 138436381 138436421 -21163362 + AT_rich Low_complexity Low_complexity 1 40 0 8 1641 333 351 32 36 chr3 138436728 138436947 -21162836 - MER102b DNA MER1_type -22 319 102 8 1641 268 311 57 0 chr3 138438193 138438299 -21161484 - PB1D7 SINE Alu -7 113 2 8 1641 264 30 0 0 chr3 138438572 138438605 -21161178 + (CA)n Simple_repeat Simple_repeat 2 34 0 8 1641 754 339 48 19 chr3 138438605 138438662 -21161121 + MER2 DNA MER2_type 21 79 -266 8 1641 641 230 14 0 chr3 138438662 138438801 -21160982 + B1_Mur1 SINE Alu 1 141 -8 8 1641 754 339 48 19 chr3 138438801 138439059 -21160724 + MER2 DNA MER2_type 80 345 0 8 1641 275 303 121 67 chr3 138439116 138439339 -21160444 - L2a LINE L2 -88 3338 3104 8 1641 314 328 23 30 chr3 138439435 138439567 -21160216 - L2a LINE L2 -548 2871 2741 8 1641 414 175 0 0 chr3 138439651 138439731 -21160052 + (CACCAT)n Simple_repeat Simple_repeat 6 85 0 8 1641 279 0 0 0 chr3 138441509 138441540 -21158243 + (TG)n Simple_repeat Simple_repeat 2 32 0 8 1641 692 266 70 48 chr3 138442956 138443312 -21156471 + L1MB5 LINE L1 5536 5899 -275 8 1641 253 355 0 22 chr3 138443324 138443570 -21156213 + GA-rich Low_complexity Low_complexity 1 240 0 8 1641 1224 287 68 23 chr3 138443707 138444146 -21155637 - MLT1C LTR MaLR -6 461 3 8 1641 692 221 152 6 chr3 138444198 138444362 -21155421 + B3 SINE B2 3 190 -26 8 1641 546 16 0 0 chr3 138444367 138444430 -21155353 + (CA)n Simple_repeat Simple_repeat 2 64 0 8 1641 594 316 169 26 chr3 138444786 138445214 -21154569 - MLT1G LTR MaLR -53 502 11 8 1641 344 274 67 23 chr3 138445317 138445502 -21154281 + MLT1A1 LTR MaLR 202 390 -18 8 1641 288 0 0 0 chr3 138445613 138445645 -21154138 + (TTG)n Simple_repeat Simple_repeat 2 33 0 8 1641 261 0 0 0 chr3 138446279 138446308 -21153475 + (T)n Simple_repeat Simple_repeat 1 29 0 8 1641 256 418 0 10 chr3 138446435 138446539 -21153244 + MIRb SINE MIR 7 109 -159 8 1641 883 270 30 48 chr3 138446787 138447082 -21152701 + B4A SINE B4 2 291 -1 8 1641 353 315 35 26 chr3 138447908 138448022 -21151761 + MIR3 SINE MIR 49 163 -45 8 1641 29 47 0 0 chr3 138448037 138448080 -21151703 + AT_rich Low_complexity Low_complexity 1 43 0 8 1641 3195 58 5 10 chr3 138448893 138449291 -21150492 + MTA_Mm LTR MaLR 1 396 0 8 1641 1263 222 98 48 chr3 138449546 138449924 -21149859 + MTD LTR MaLR 23 419 0 8 1641 525 323 134 9 chr3 138450250 138450481 -21149302 + MER2 DNA MER2_type 86 345 0 8 1641 1098 234 97 24 chr3 138450948 138451246 -21148537 - MamRep4096 DNA hAT? -103 323 4 8 1641 259 197 16 16 chr3 138451247 138451309 -21148474 - MLT1M LTR MaLR -471 201 140 8 1641 423 38 0 0 chr3 138451403 138451456 -21148327 + (GGGA)n Simple_repeat Simple_repeat 3 55 0 8 1641 893 264 74 41 chr3 138452743 138453012 -21146771 - B4A SINE B4 0 292 15 8 1641 2592 73 0 0 chr3 138453138 138453465 -21146318 + ORR1A2 LTR MaLR 1 327 0 8 1641 378 0 0 0 chr3 138453688 138453730 -21146053 + (TG)n Simple_repeat Simple_repeat 2 43 0 9 1641 203 54 26 51 chr3 138456561 138456600 -21143183 + (CAAAC)n Simple_repeat Simple_repeat 2 39 0 9 1641 237 33 0 0 chr3 138457409 138457439 -21142344 + (TGG)n Simple_repeat Simple_repeat 3 32 0 9 1641 260 278 28 0 chr3 138457992 138458064 -21141719 - L4 LINE RTE -193 1836 1763 9 1641 966 148 0 0 chr3 138458221 138458452 -21141331 + (TCCA)n Simple_repeat Simple_repeat 1 231 0 9 1641 448 274 111 0 chr3 138459181 138459334 -21140449 + ID_B1 SINE B4 1 170 -54 9 1641 298 221 161 11 chr3 138459269 138459356 -21140427 + PB1D10 SINE Alu 11 110 -7 9 1641 375 41 0 0 chr3 138459477 138459526 -21140257 + (TG)n Simple_repeat Simple_repeat 2 50 0 9 1641 342 0 0 0 chr3 138460042 138460080 -21139703 + (TG)n Simple_repeat Simple_repeat 2 39 0 9 1641 465 133 0 0 chr3 138460084 138460159 -21139624 + (TCCA)n Simple_repeat Simple_repeat 3 77 0 9 1641 213 39 0 0 chr3 138460169 138460195 -21139588 + (TCTG)n Simple_repeat Simple_repeat 3 28 0 9 1641 472 225 162 96 chr3 138460824 138461021 -21138762 - B3 SINE B2 -4 212 3 9 1641 358 284 249 43 chr3 138462090 138462469 -21137314 + L1ME1 LINE L1 5693 6149 -30 9 1641 833 246 138 6 chr3 138463650 138463985 -21135798 + MTEb LTR MaLR 1 379 0 9 1641 320 215 62 0 chr3 138467448 138467513 -21132270 - L1MEg LINE L1 -4160 1924 1856 9 1641 651 152 28 14 chr3 138468621 138468976 -21130807 + (TG)n Simple_repeat Simple_repeat 1 360 0 9 1641 796 265 82 43 chr3 138468982 138469262 -21130521 - B4A SINE B4 -1 291 1 9 1641 228 299 171 31 chr3 138471362 138471555 -21128228 - ID_B1 SINE B4 -3 221 2 9 1641 385 281 31 20 chr3 138471567 138471665 -21128118 - PB1D10 SINE Alu -16 101 3 9 1641 1272 27 0 7 chr3 138471678 138471825 -21127958 + B1_Mm SINE Alu 2 147 0 9 1641 208 265 20 0 chr3 138473320 138473369 -21126414 + L2b LINE L2 3306 3355 -20 9 1641 400 215 27 207 chr3 138473959 138474056 -21125727 + ID SINE ID 14 76 -148 9 1641 324 242 9 149 chr3 138474056 138474163 -21125620 + PB1D10 SINE Alu 1 92 -25 9 1641 201 207 17 17 chr3 138475479 138475538 -21124245 + T-rich Low_complexity Low_complexity 2 60 0 9 1641 1053 30 0 0 chr3 138477168 138477299 -21122484 - B1_Mus1 SINE Alu -12 136 6 9 1641 23 0 0 0 chr3 138479765 138479788 -21119995 + AT_rich Low_complexity Low_complexity 1 23 0 9 1641 21 0 0 0 chr3 138479838 138479859 -21119924 + AT_rich Low_complexity Low_complexity 1 21 0 9 1641 739 236 21 52 chr3 138480774 138480966 -21118817 + B3 SINE B2 2 187 -29 9 1641 391 287 117 93 chr3 138481003 138481281 -21118502 + B4 SINE B4 18 291 -1 9 1641 987 255 173 21 chr3 138481565 138481894 -21117889 + MTE2b LTR MaLR 1 379 0 9 1641 1205 35 0 14 chr3 138482440 138482587 -21117196 + B1_Mus1 SINE Alu 3 147 -1 9 1641 231 175 0 0 chr3 138482588 138482645 -21117138 + A-rich Low_complexity Low_complexity 1 57 0 9 1641 188 273 0 0 chr3 138483249 138483293 -21116490 - MIRc SINE MIR -109 159 116 9 1641 186 43 0 0 chr3 138483977 138484000 -21115783 + (TG)n Simple_repeat Simple_repeat 2 24 0 9 1641 651 112 0 0 chr3 138484310 138484417 -21115366 + (CA)n Simple_repeat Simple_repeat 1 107 0 9 1641 430 278 36 11 chr3 138484425 138484621 -21115162 - L1MA4 LINE L1 -381 5919 5702 9 1641 21 0 0 0 chr3 138485632 138485653 -21114130 + AT_rich Low_complexity Low_complexity 1 21 0 9 1641 242 264 133 33 chr3 138485659 138485749 -21114034 - RSINE1 SINE B4 -19 146 48 9 1641 1217 68 0 0 chr3 138486317 138486464 -21113319 + B1_Mm SINE Alu 1 147 0 9 1641 369 209 0 0 chr3 138486519 138486586 -21113197 - PB1D10 SINE Alu -15 102 36 9 1641 378 0 0 0 chr3 138487879 138487921 -21111862 + (TC)n Simple_repeat Simple_repeat 1 42 0 9 1641 300 27 0 0 chr3 138487921 138487957 -21111826 + (CA)n Simple_repeat Simple_repeat 1 37 0 9 1641 295 200 358 12 chr3 138488088 138488169 -21111614 + PB1D9 SINE Alu 2 110 -10 9 1641 582 266 39 28 chr3 138488191 138488369 -21111414 + B3A SINE B2 3 182 -16 9 1641 247 0 25 50 chr3 138489065 138489105 -21110678 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 9 1641 2611 143 76 18 chr3 138489778 138490276 -21109507 - RLTR11A2 LTR ERVK 0 527 1 9 1641 382 64 0 0 chr3 138491547 138491594 -21108189 - ORR1B1 LTR MaLR -8 386 340 9 1641 1845 157 80 3 chr3 138492154 138492481 -21107302 - ORR1B1 LTR MaLR -41 353 2 9 1641 261 146 0 0 chr3 138492962 138493010 -21106773 + (T)n Simple_repeat Simple_repeat 1 48 0 9 1641 207 173 0 0 chr3 138493273 138493325 -21106458 + (CGTG)n Simple_repeat Simple_repeat 1 52 0 9 1641 1205 48 7 0 chr3 138493974 138494119 -21105664 + B1_Mus2 SINE Alu 1 146 -1 9 1641 248 262 16 0 chr3 138494219 138494280 -21105503 - ID4 SINE ID -20 63 2 9 1641 552 295 94 21 chr3 138494751 138495027 -21104756 - B4A SINE B4 -3 289 1 9 1641 330 336 17 0 chr3 138495115 138495231 -21104552 + B3 SINE B2 99 216 0 9 1641 401 265 87 40 chr3 138495917 138496090 -21103693 - L1MC3 LINE L1 -529 7256 7076 9 1641 21 36 0 0 chr3 138496667 138496695 -21103088 + AT_rich Low_complexity Low_complexity 1 28 0 9 1641 508 328 70 80 chr3 138496892 138497293 -21102490 + Charlie22a DNA MER1_type 93 489 -2 9 1641 436 238 0 0 chr3 138498665 138498745 -21101038 - ID_B1 SINE B4 0 224 145 9 1641 1259 109 16 26 chr3 138498762 138498951 -21100832 + B2_Mm2 SINE B2 1 187 -8 9 1641 291 154 0 0 chr3 138498952 138499017 -21100766 + (TG)n Simple_repeat Simple_repeat 2 66 0 9 1641 472 224 114 53 chr3 138499018 138499150 -21100633 - RSINE1 SINE B4 0 165 26 9 1641 500 285 54 34 chr3 138499157 138499306 -21100477 - ID_B1 SINE B4 -71 153 2 9 1641 228 67 0 0 chr3 138499318 138499348 -21100435 + (ATG)n Simple_repeat Simple_repeat 3 32 0 9 1641 478 287 74 31 chr3 138500826 138500988 -21098795 + B4 SINE B4 123 291 -1 1 1641 194 128 26 0 chr3 138500997 138501036 -21098747 + (CA)n Simple_repeat Simple_repeat 2 41 0 2 1641 698 168 0 7 chr3 138501361 138501499 -21098284 + (TA)n Simple_repeat Simple_repeat 2 138 0 3 1641 229 315 11 53 chr3 138503028 138503122 -21096661 - Charlie9 DNA MER1_type -2 2755 2666 4 1641 232 266 155 34 chr3 138503373 138503521 -21096262 + MIRb SINE MIR 26 191 -77 5 1641 324 0 0 0 chr3 138504701 138504737 -21095046 + (TC)n Simple_repeat Simple_repeat 1 36 0 6 1641 405 0 0 0 chr3 138504737 138504781 -21095002 + (CA)n Simple_repeat Simple_repeat 1 45 0 7 1641 826 191 14 0 chr3 138505185 138505326 -21094457 + B1_Mus1 SINE Alu 1 143 -5 8 1641 504 295 100 21 chr3 138506113 138506394 -21093389 + ORR1E LTR MaLR 3 305 -54 9 1641 387 322 108 65 chr3 138506569 138506848 -21092935 - MLT1F2 LTR MaLR 0 560 270 1 1641 198 0 0 0 chr3 138507457 138507479 -21092304 + (TTTG)n Simple_repeat Simple_repeat 1 22 0 1 1641 838 264 16 195 chr3 138507479 138507686 -21092097 - L1_Mur3 LINE L1 -635 5245 5045 1 1641 441 78 0 0 chr3 138507694 138507758 -21092025 - 4.5SRNA scRNA scRNA -30 64 1 1 1641 838 264 16 195 chr3 138507766 138507979 -21091804 - L1_Mur3 LINE L1 -635 5044 4836 1 1641 200 35 35 0 chr3 138507984 138508013 -21091770 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 1 1641 1566 275 79 30 chr3 138508027 138508748 -21091035 + Lx8 LINE L1 5320 6073 -1400 1 1641 333 0 0 0 chr3 138508759 138508796 -21090987 + (TG)n Simple_repeat Simple_repeat 1 37 0 1 1641 3375 287 55 16 chr3 138508885 138510014 -21089769 + Lx8 LINE L1 6301 7473 0 1 1641 230 319 0 53 chr3 138510026 138510102 -21089681 + ID SINE ID 7 78 -146 1 1641 645 211 180 6 chr3 138510167 138510334 -21089449 - B3A SINE B2 -2 196 1 1 1641 456 254 134 0 chr3 138511524 138511658 -21088125 - B3A SINE B2 -46 152 1 1 1641 366 280 0 2 chr3 138511826 138511909 -21087874 - ID4_ SINE ID -61 91 10 2 1641 372 229 0 0 chr3 138511938 138512008 -21087775 - ID2 SINE ID -12 71 2 2 1641 204 179 0 0 chr3 138512095 138512134 -21087649 + C-rich Low_complexity Low_complexity 3 41 0 2 1641 183 42 0 0 chr3 138512458 138512482 -21087301 + (TG)n Simple_repeat Simple_repeat 2 25 0 2 1641 231 272 130 0 chr3 138514607 138514699 -21085084 - Charlie9 DNA MER1_type -2654 103 1 4 1641 217 316 80 70 chr3 138514756 138514943 -21084840 + L2c LINE L2 3137 3325 -62 2 1641 252 0 0 0 chr3 138514944 138514972 -21084811 + (CA)n Simple_repeat Simple_repeat 2 29 0 2 1641 256 208 0 0 chr3 138515661 138515714 -21084069 + MLT1A0 LTR MaLR 263 315 -50 2 1641 202 292 77 0 chr3 138516925 138516990 -21082793 - MIRb SINE MIR -164 104 32 2 1641 288 281 47 24 chr3 138518290 138518474 -21081309 - MIR SINE MIR -34 242 58 2 1641 342 0 0 0 chr3 138518905 138518943 -21080840 + (CA)n Simple_repeat Simple_repeat 1 38 0 2 1641 232 349 12 0 chr3 138519335 138519421 -21080362 + L2 LINE L2 2704 2790 -629 3 1641 699 251 110 0 chr3 138519600 138519791 -21079992 + B3 SINE B2 1 212 -4 3 1641 903 152 7 0 chr3 138520305 138520443 -21079340 - B1_Mus1 SINE Alu -9 139 1 3 1641 31 0 0 0 chr3 138520915 138520946 -21078837 + AT_rich Low_complexity Low_complexity 1 31 0 3 1641 440 279 128 41 chr3 138522485 138522657 -21077126 - B3A SINE B2 0 198 12 3 1641 216 254 28 14 chr3 138523872 138523944 -21075839 - ID4_ SINE ID -10 73 1 3 1641 228 0 0 0 chr3 138525112 138525141 -21074642 + B3A SINE B2 2 30 -168 3 1641 768 199 188 27 chr3 138525141 138525327 -21074456 + B3 SINE B2 1 216 0 3 1641 736 214 7 33 chr3 138525813 138525963 -21073820 + B1_Mur1 SINE Alu 2 147 -2 3 1641 759 248 53 24 chr3 138525970 138526177 -21073606 + Lx8 LINE L1 6381 6593 -880 3 1641 504 309 65 0 chr3 138526192 138526360 -21073423 + Lx8 LINE L1 6698 6876 -597 3 1641 744 84 234 40 chr3 138526376 138526500 -21073283 + B1_Mus1 SINE Alu 1 148 0 4 1641 1468 73 16 5 chr3 138526541 138526734 -21073049 - B2_Mm2 SINE B2 0 195 1 4 1641 595 206 240 74 chr3 138526738 138527063 -21072720 + Lx8 LINE L1 7090 7468 -5 3 1641 210 272 126 32 chr3 138527990 138528085 -21071698 - PB1D10 SINE Alu 0 117 14 4 1641 1015 96 0 58 chr3 138528877 138529032 -21070751 - B1_Mus2 SINE Alu 0 147 2 4 1641 1227 72 65 11 chr3 138529036 138529220 -21070563 - B2_Mm2 SINE B2 -1 194 1 4 1641 1338 194 141 50 chr3 138529242 138529626 -21070157 + MTD LTR MaLR 1 419 0 4 1641 1230 54 0 0 chr3 138529795 138529942 -21069841 - B1_Mm SINE Alu 0 147 1 4 1641 212 0 36 0 chr3 138529942 138529970 -21069813 + (TTA)n Simple_repeat Simple_repeat 2 30 0 4 1641 271 306 0 14 chr3 138530451 138530524 -21069259 - Kanga1a DNA Tc2 -667 87 16 4 1641 227 196 0 0 chr3 138531156 138531207 -21068576 + T-rich Low_complexity Low_complexity 1 51 0 4 1641 929 239 122 16 chr3 138532459 138532714 -21067069 + B4A SINE B4 7 288 -4 5 1641 356 191 84 0 chr3 138533749 138533820 -21065963 - BC1_Mm scRNA scRNA -5 78 2 5 1641 627 231 155 5 chr3 138535717 138535904 -21063879 + B3 SINE B2 2 216 0 5 1641 229 169 65 0 chr3 138535924 138536001 -21063782 + (TA)n Simple_repeat Simple_repeat 2 83 0 5 1641 186 103 0 0 chr3 138536273 138536302 -21063481 + (TCC)n Simple_repeat Simple_repeat 2 30 0 5 1641 638 250 54 0 chr3 138536849 138536997 -21062786 - B3A SINE B2 -42 156 1 5 1641 490 312 93 0 chr3 138537039 138537244 -21062539 + ID_B1 SINE B4 1 224 0 5 1641 380 306 0 39 chr3 138537300 138537402 -21062381 + PB1D10 SINE Alu 11 108 -9 5 1641 459 341 53 67 chr3 138538540 138538901 -21060882 - MLT1A LTR MaLR -12 362 7 5 1641 211 182 0 0 chr3 138540651 138540684 -21059099 + (CGTG)n Simple_repeat Simple_repeat 3 35 0 5 1641 2086 129 60 60 chr3 138540696 138541099 -21058684 - MTB_Mm LTR MaLR 0 407 5 6 1641 467 341 56 24 chr3 138541169 138541382 -21058401 - MIRb SINE MIR -1 267 48 6 1641 533 200 24 24 chr3 138541382 138541505 -21058278 + L1M2 LINE L1 5480 5602 -689 6 1641 444 325 16 0 chr3 138541523 138541668 -21058115 + B1F SINE Alu 1 147 -2 6 1641 701 297 58 88 chr3 138541691 138541986 -21057797 + B4A SINE B4 1 286 -6 6 1641 297 0 0 0 chr3 138542301 138542334 -21057449 + (CA)n Simple_repeat Simple_repeat 1 33 0 6 205 186 318 0 74 chr3 138543017 138543112 -21056671 - L3 LINE CR1 -1904 2585 2498 6 1642 350 299 84 17 chr3 138543131 138543250 -21056533 - ID_B1 SINE B4 -3 221 95 6 1642 1429 88 16 0 chr3 138543289 138543481 -21056302 - B2_Mm2 SINE B2 0 195 1 6 1642 210 71 0 0 chr3 138544299 138544327 -21055456 + (CA)n Simple_repeat Simple_repeat 2 29 0 6 1642 245 27 0 51 chr3 138544395 138544434 -21055349 + (TCTCTG)n Simple_repeat Simple_repeat 2 38 0 7 1642 351 0 0 0 chr3 138544457 138544496 -21055287 + (TG)n Simple_repeat Simple_repeat 2 40 0 7 1642 332 289 72 0 chr3 138544499 138544596 -21055187 - ID_B1 SINE B4 -31 193 90 7 1642 733 244 117 15 chr3 138545361 138545557 -21054226 - B3 SINE B2 0 216 1 7 1642 252 0 0 0 chr3 138545583 138545611 -21054172 + (TG)n Simple_repeat Simple_repeat 2 29 0 7 1642 1015 209 35 0 chr3 138545623 138545824 -21053959 + B3 SINE B2 4 211 -5 7 1642 673 265 39 65 chr3 138545940 138546170 -21053613 + B4A SINE B4 69 292 0 7 1642 930 293 175 69 chr3 138546194 138546801 -21052982 + L1MA4A LINE L1 2191 2960 -2920 7 1642 694 214 71 56 chr3 138546801 138546999 -21052784 + B3 SINE B2 2 202 -14 7 1642 930 293 175 69 chr3 138546999 138547964 -21051819 + L1MA4A LINE L1 2961 3929 -1951 7 1642 498 279 95 7 chr3 138547964 138548112 -21051671 + B3A SINE B2 1 161 -37 7 1642 378 0 0 0 chr3 138548118 138548160 -21051623 + (CA)n Simple_repeat Simple_repeat 2 43 0 8 1642 523 237 26 0 chr3 138548176 138548305 -21051478 + L1_Rod LINE L1 3943 4102 -2041 8 1642 397 332 115 28 chr3 138548403 138548620 -21051163 - B4A SINE B4 -56 236 1 8 1642 2405 270 145 35 chr3 138548661 138549527 -21050256 + L1MA4A LINE L1 4077 5044 -836 7 1642 788 224 65 16 chr3 138549527 138549713 -21050070 + B3A SINE B2 1 195 -3 8 1642 2405 270 145 35 chr3 138549713 138549913 -21049870 + L1MA4A LINE L1 5045 5258 -622 7 1642 1317 101 11 0 chr3 138549913 138550092 -21049691 + B2_Mm1t SINE B2 1 181 -12 8 1642 2405 271 142 34 chr3 138550092 138550664 -21049119 + L1MA4A LINE L1 5259 5931 -372 7 1642 718 289 22 107 chr3 138550877 138551171 -21048612 + B4A SINE B4 2 269 -23 8 1642 324 48 0 0 chr3 138551171 138551213 -21048570 + (CA)n Simple_repeat Simple_repeat 2 43 0 8 1642 718 289 22 107 chr3 138551213 138551236 -21048547 + B4A SINE B4 270 291 -1 8 1642 270 264 35 85 chr3 138551293 138551434 -21048349 + L1MA4A LINE L1 6164 6297 -3 7 1642 1226 28 14 0 chr3 138551458 138551603 -21048180 + B1_Mm SINE Alu 1 147 0 8 1642 322 288 122 14 chr3 138553301 138553449 -21046334 - HAL1-3A_ME LINE L1 -412 2446 2283 8 1642 243 0 0 0 chr3 138553449 138553476 -21046307 + (TCCC)n Simple_repeat Simple_repeat 4 30 0 8 1642 196 30 0 57 chr3 138556833 138556868 -21042915 + (TG)n Simple_repeat Simple_repeat 1 33 0 9 1642 1441 60 16 11 chr3 138558942 138559127 -21040656 + B2_Mm2 SINE B2 3 188 -7 9 1642 40 49 0 0 chr3 138560936 138560997 -21038786 + AT_rich Low_complexity Low_complexity 1 61 0 9 1642 702 317 75 5 chr3 138561817 138562217 -21037566 + L1M4 LINE L1 4468 4895 -1251 9 1642 976 234 10 0 chr3 138562268 138562460 -21037323 + B3 SINE B2 9 202 -14 9 1642 281 312 9 18 chr3 138562491 138562605 -21037178 + L1M4 LINE L1 4901 5013 -1133 9 1642 238 268 1 135 chr3 138562605 138562723 -21037060 + PB1D10 SINE Alu 3 107 -13 9 1642 1507 59 0 5 chr3 138562772 138562959 -21036824 + B2_Mm2 SINE B2 2 187 -8 9 1642 434 65 16 0 chr3 138563150 138563212 -21036571 + (TA)n Simple_repeat Simple_repeat 2 64 0 9 1642 338 231 152 14 chr3 138563264 138563406 -21036377 + L1M4 LINE L1 5315 5468 -712 9 1642 298 327 26 0 chr3 138564607 138564720 -21035063 - ORR1E LTR MaLR -236 123 8 9 1642 333 294 69 5 chr3 138564733 138564921 -21034862 + L1MB7 LINE L1 5847 6046 -138 9 1642 992 219 47 9 chr3 138565021 138565233 -21034550 - ID_B1 SINE B4 -4 220 1 1 1642 215 61 30 0 chr3 138566190 138566223 -21033560 + (TTTC)n Simple_repeat Simple_repeat 2 35 0 1 1642 180 0 0 0 chr3 138567840 138567860 -21031923 + (TG)n Simple_repeat Simple_repeat 2 21 0 1 1642 28 0 0 0 chr3 138569122 138569150 -21030633 + AT_rich Low_complexity Low_complexity 1 28 0 1 1642 247 367 0 30 chr3 138570305 138570406 -21029377 - B1F1 SINE Alu -31 118 21 1 1642 393 345 35 28 chr3 138570665 138570808 -21028975 - B1F2 SINE Alu -4 145 2 1 1642 945 171 135 5 chr3 138571201 138571401 -21028382 - URR1A DNA MER1_type 0 226 1 1 1642 832 156 35 96 chr3 138571887 138572085 -21027698 + B3 SINE B2 12 197 -19 1 1642 405 311 143 44 chr3 138572108 138572380 -21027403 + MLT1A0 LTR MaLR 67 365 0 1 1642 256 242 66 0 chr3 138572677 138572768 -21027015 - MER5A1 DNA MER1_type -56 110 14 1 1642 323 244 12 25 chr3 138572791 138572871 -21026912 + ID4_ SINE ID 5 83 0 1 1642 480 200 0 0 chr3 138573910 138574090 -21025693 + GA-rich Low_complexity Low_complexity 1 180 0 1 1642 231 57 57 0 chr3 138574097 138574132 -21025651 + (CAGAGA)n Simple_repeat Simple_repeat 4 40 0 1 1642 323 312 55 123 chr3 138574133 138574279 -21025504 - RSINE1 SINE B4 -28 137 2 1 1642 323 237 38 0 chr3 138574323 138574428 -21025355 - B3A SINE B2 -103 113 1 1 1642 441 319 87 16 chr3 138574679 138574921 -21024862 - MER2 DNA MER2_type -2 343 85 1 1642 666 191 0 8 chr3 138575121 138575253 -21024530 + ID_B1 SINE B4 83 213 -11 1 1642 237 256 136 87 chr3 138576043 138576227 -21023556 + MLT1B LTR MaLR 2 194 -180 1 1642 283 284 59 17 chr3 138576243 138576361 -21023422 + MLT1B LTR MaLR 252 374 -16 1 1642 276 226 40 61 chr3 138577404 138577503 -21022280 - PB1D10 SINE Alu 0 117 21 1 1642 240 238 86 0 chr3 138578342 138578447 -21021336 - LTR40a LTR ERVL -401 118 5 1 1642 702 216 13 7 chr3 138579910 138580064 -21019719 + MTD LTR MaLR 179 333 -86 1 1642 254 355 13 0 chr3 138580592 138580668 -21019115 - ID4_ SINE ID -6 77 1 1 1642 1067 263 26 0 chr3 138580722 138580992 -21018791 - B4A SINE B4 -2 290 14 1 1642 492 210 181 24 chr3 138581530 138581657 -21018126 - B1_Mur2 SINE Alu -1 148 2 1 1642 3662 210 113 25 chr3 138581975 138583074 -21016709 - Lx9 LINE L1 -1632 6012 4783 1 1642 1804 219 40 47 chr3 138583081 138583632 -21016151 - Lx9 LINE L1 -1298 4549 4003 1 1642 691 146 145 7 chr3 138583632 138583777 -21016006 - URR1B DNA MER1_type 0 225 61 1 1642 1386 186 60 52 chr3 138583814 138584199 -21015584 - Lx9 LINE L1 -1837 4010 3623 1 1642 285 261 51 59 chr3 138584195 138584313 -21015470 - L1_Mur2 LINE L1 -2651 3226 3110 1 1642 1818 158 94 14 chr3 138584313 138584665 -21015118 + MTC LTR MaLR 1 380 -41 1 1642 814 161 69 8 chr3 138584667 138584829 -21014954 + L1_Rod LINE L1 2314 2483 -3364 1 1642 3077 215 86 45 chr3 138584829 138585796 -21013987 - Lx9 LINE L1 -2719 3128 2122 1 1642 2371 188 77 24 chr3 138585805 138586820 -21012963 - Lx9 LINE L1 -4036 1811 735 1 1642 25 65 0 0 chr3 138587093 138587139 -21012644 + AT_rich Low_complexity Low_complexity 1 46 0 1 1642 601 194 89 0 chr3 138587143 138587267 -21012516 - B1_Mur2 SINE Alu -7 142 8 1 1642 219 272 151 11 chr3 138587445 138587538 -21012245 - MIRb SINE MIR -154 114 9 1 1642 409 275 79 20 chr3 138587550 138587702 -21012081 - RSINE1 SINE B4 -1 164 4 1 1642 23 0 0 0 chr3 138588128 138588151 -21011632 + AT_rich Low_complexity Low_complexity 1 23 0 1 1642 189 0 0 0 chr3 138590087 138590108 -21009675 + (CAAAA)n Simple_repeat Simple_repeat 1 21 0 1 1642 551 266 18 48 chr3 138591249 138591415 -21008368 - RSINE1 SINE B4 -2 163 3 1 1642 398 211 222 26 chr3 138591521 138591638 -21008145 - B1_Mur2 SINE Alu 0 149 10 1 1642 400 260 185 0 chr3 138591724 138591897 -21007886 + L1M3 LINE L1 4767 4971 -1175 1 1642 552 290 24 39 chr3 138591910 138592118 -21007665 + L1M3 LINE L1 5083 5287 -853 1 1642 28850 135 20 8 chr3 138592700 138594655 -21005128 + L1_Mus3 LINE L1 395 2349 -3534 1 1642 4032 64 2 10 chr3 138594655 138595177 -21004606 + L1Md_F2 LINE L1 6065 6582 0 1 1642 28850 113 20 11 chr3 138595177 138599395 -21000388 + L1_Mus3 LINE L1 2350 6637 -1 1 1642 188 111 28 0 chr3 138602876 138602912 -20996871 + (TAA)n Simple_repeat Simple_repeat 3 39 0 1 1642 435 277 74 7 chr3 138602933 138603082 -20996701 + L1MB3 LINE L1 5978 6136 -47 1 1642 225 0 0 0 chr3 138603701 138603726 -20996057 + (T)n Simple_repeat Simple_repeat 1 25 0 1 1642 605 286 107 27 chr3 138603774 138604213 -20995570 + L1MD LINE L1 2136 2609 -3537 1 1642 469 289 7 36 chr3 138604428 138604568 -20995215 + B3A SINE B2 9 144 -54 1 1642 386 176 107 10 chr3 138605229 138605332 -20994451 - B1_Mus2 SINE Alu -21 126 14 1 1642 241 287 109 14 chr3 138605932 138606070 -20993713 + L1_Rod LINE L1 2135 2285 -3562 1 1642 3565 54 2 5 chr3 138606380 138606825 -20992958 + L1_Mus1 LINE L1 6058 6501 -66 1 1642 883 303 197 26 chr3 138606861 138607057 -20992726 + L1M2 LINE L1 3193 3409 -2471 1 1642 1274 110 33 0 chr3 138607057 138607239 -20992544 + B2_Mm2 SINE B2 2 189 -6 1 1642 1023 288 125 30 chr3 138607239 138607910 -20991873 + L1M2 LINE L1 3410 4219 -1924 1 1642 387 188 0 0 chr3 138608244 138608313 -20991470 - ID SINE ID -155 69 1 1 1642 22 35 0 0 chr3 138609072 138609101 -20990682 + AT_rich Low_complexity Low_complexity 1 29 0 1 1642 476 170 441 15 chr3 138609133 138609334 -20990449 + Lx9 LINE L1 7315 7601 -43 1 1642 4557 88 0 34 chr3 138609650 138610297 -20989486 + L1Md_F2 LINE L1 5958 6582 0 1 1642 334 288 53 40 chr3 138610670 138610822 -20988961 - RSINE1 SINE B4 -10 155 2 1 1642 234 0 0 0 chr3 138611068 138611094 -20988689 + (TGAA)n Simple_repeat Simple_repeat 3 28 0 1 1642 377 297 102 54 chr3 138613672 138614209 -20985574 + L1M3 LINE L1 4628 5190 -950 1 1642 265 280 181 66 chr3 138614281 138614568 -20985215 + L1M3 LINE L1 5303 5622 -678 1 1642 26 64 0 0 chr3 138614988 138615035 -20984748 + AT_rich Low_complexity Low_complexity 1 47 0 1 1642 212 272 35 0 chr3 138615126 138615217 -20984566 - MIRb SINE MIR -152 110 14 1 1642 322 214 71 12 chr3 138615372 138615457 -20984326 - PB1D7 SINE Alu -30 90 1 1 1642 248 372 84 12 chr3 138615714 138615880 -20983903 + RMER4A LTR ERVK 10 187 -279 1 1642 352 250 77 0 chr3 138616224 138616325 -20983458 - B1_Mur1 SINE Alu -7 141 34 1 1642 1419 169 223 15 chr3 138616590 138616927 -20982856 + MTB_Mm LTR MaLR 1 407 0 1 1642 226 274 81 0 chr3 138617785 138617847 -20981936 + ID4_ SINE ID 6 72 -11 1 1642 382 297 93 0 chr3 138619422 138619540 -20980243 + ID_B1 SINE B4 86 214 -10 1 1642 258 240 146 68 chr3 138620213 138620316 -20979467 - B1_Mur2 SINE Alu -9 111 1 1 1642 383 38 19 0 chr3 138622294 138622347 -20977436 + (CAAA)n Simple_repeat Simple_repeat 4 57 0 1 1642 1187 54 0 13 chr3 138622863 138623012 -20976771 + B1_Mus2 SINE Alu 1 147 0 1 1642 339 85 0 0 chr3 138623012 138623059 -20976724 + (A)n Simple_repeat Simple_repeat 1 47 0 1 1642 356 267 50 64 chr3 138624242 138624382 -20975401 - MTEa LTR MaLR -236 143 6 1 1642 317 318 124 58 chr3 138624384 138624641 -20975142 - L1ME3B LINE L1 -23 6217 5944 1 1642 373 237 39 155 chr3 138624657 138624812 -20974971 - RSINE1 SINE B4 -1 164 28 1 1642 23 0 0 0 chr3 138624869 138624892 -20974891 + AT_rich Low_complexity Low_complexity 1 23 0 1 1642 719 205 7 20 chr3 138624898 138625047 -20974736 + B1_Mur2 SINE Alu 3 149 0 1 1642 264 239 0 40 chr3 138625163 138625237 -20974546 - B1_Mur3 SINE Alu -4 145 75 1 1642 288 294 74 59 chr3 138625680 138625819 -20973964 - B4 SINE B4 -2 290 78 1 1642 334 268 0 35 chr3 138625866 138625951 -20973832 - B4 SINE B4 -209 83 2 1 1642 560 215 189 64 chr3 138626311 138626544 -20973239 - B4A SINE B4 -23 269 2 1 1642 518 207 107 8 chr3 138627536 138627658 -20972125 - B1_Mur1 SINE Alu -5 144 11 1 1642 399 56 0 0 chr3 138627729 138627783 -20972000 + (CA)n Simple_repeat Simple_repeat 2 55 0 1 1642 218 232 0 51 chr3 138628028 138628087 -20971696 + A-rich Low_complexity Low_complexity 4 59 0 1 1642 372 272 128 35 chr3 138628219 138628360 -20971423 + RSINE1 SINE B4 2 155 -10 1 1642 222 37 0 0 chr3 138631457 138631484 -20968299 + (CAAAAA)n Simple_repeat Simple_repeat 2 28 0 1 1642 419 317 124 31 chr3 138631521 138631976 -20967807 + Charlie1a DNA MER1_type 20 288 -1167 1 1642 15811 167 129 45 chr3 138634527 138635945 -20963838 - L1_Mur3 LINE L1 -61 5819 4224 1 1642 1146 75 124 0 chr3 138635945 138636106 -20963677 - B2_Mm2 SINE B2 -14 181 1 1 1642 15811 172 107 40 chr3 138636106 138640275 -20959508 - L1_Mur3 LINE L1 -1657 4223 17 1 1642 369 0 0 0 chr3 138641143 138641184 -20958599 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 1642 1309 225 61 0 chr3 138641372 138641652 -20958131 - MTD LTR MaLR -122 297 1 1 1642 1389 60 0 0 chr3 138642010 138642295 -20957488 + (TG)n Simple_repeat Simple_repeat 1 285 0 1 1642 265 222 48 24 chr3 138642302 138642385 -20957398 - RSINE1 SINE B4 -44 121 37 1 1642 378 231 306 0 chr3 138642902 138643010 -20956773 + B1_Mur1 SINE Alu 1 141 -8 1 1642 352 324 49 35 chr3 138643455 138643599 -20956184 + Tigger5 DNA MER2_type 49 194 -2212 1 1642 387 292 30 78 chr3 138643572 138643739 -20956044 + Tigger5 DNA MER2_type 2248 2406 0 1 1642 557 242 261 47 chr3 138645315 138645526 -20954257 - B4A SINE B4 -10 282 27 1 1642 23 0 0 0 chr3 138646847 138646870 -20952913 + AT_rich Low_complexity Low_complexity 1 23 0 1 1642 296 204 55 0 chr3 138647195 138647268 -20952515 - ID4 SINE ID -73 79 3 1 1642 540 247 149 45 chr3 138647728 138648016 -20951767 - MER33 DNA MER1_type -1 323 6 1 1642 562 346 14 18 chr3 138648408 138648690 -20951093 + B4A SINE B4 2 282 -10 1 1642 206 222 0 0 chr3 138648700 138648745 -20951038 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 1642 355 266 73 0 chr3 138648760 138648869 -20950914 + PB1D7 SINE Alu 2 118 -2 1 1642 276 276 133 0 chr3 138649176 138649274 -20950509 - PB1D7 SINE Alu -8 112 2 1 1642 4804 201 106 67 chr3 138649522 138651172 -20948611 + Lx7 LINE L1 3908 5622 -258 1 1642 3601 238 88 38 chr3 138651183 138652473 -20947310 + Lx7 LINE L1 5750 7104 -592 1 1642 636 232 22 17 chr3 138652493 138652673 -20947110 + Lx7 LINE L1 7156 7336 -360 1 1642 253 262 47 149 chr3 138653676 138653824 -20945959 - B4 SINE B4 0 292 160 2 1642 1047 267 79 38 chr3 138653822 138654165 -20945618 - ORR1D2 LTR MaLR -13 357 1 2 1642 243 275 10 90 chr3 138654175 138654275 -20945508 - B4 SINE B4 -131 161 70 2 1642 803 134 0 0 chr3 138654275 138654394 -20945389 + RMER17C-int LTR ERVK 3120 3238 0 2 1642 1350 161 112 66 chr3 138654397 138654789 -20944994 + RMER17C LTR ERVK 1 410 0 2 1642 352 247 37 0 chr3 138654800 138654881 -20944902 - B4A SINE B4 -208 84 1 2 1642 305 318 35 0 chr3 138655360 138655445 -20944338 - B1F1 SINE Alu -59 90 3 2 1642 324 300 147 34 chr3 138656535 138656801 -20942982 + L1MCc LINE L1 963 1258 -5165 2 1642 265 302 79 12 chr3 138656970 138657134 -20942649 + L1MCc LINE L1 3018 3192 -3749 2 1642 207 0 0 0 chr3 138657173 138657196 -20942587 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 2 1642 21 0 0 0 chr3 138657391 138657412 -20942371 + AT_rich Low_complexity Low_complexity 1 21 0 2 1642 16194 211 81 18 chr3 138658671 138662235 -20937548 - Lx6 LINE L1 0 7460 3689 2 1642 1612 216 107 50 chr3 138662235 138662588 -20937195 + RMER15 LTR ERVL 1 353 -222 2 1642 360 0 0 0 chr3 138662588 138662628 -20937155 + (TG)n Simple_repeat Simple_repeat 2 41 0 2 1642 1612 216 107 50 chr3 138662628 138662816 -20936967 + RMER15 LTR ERVL 354 572 -3 2 1642 16194 182 80 13 chr3 138662816 138664676 -20935107 - Lx6 LINE L1 -2192 3688 1692 2 1642 4755 192 94 31 chr3 138664676 138666161 -20933622 - Lx6 LINE L1 -4474 1406 48 2 1642 605 240 14 0 chr3 138666677 138666823 -20932960 + L1_Mur3 LINE L1 634 781 -6931 2 1642 207 0 0 0 chr3 138667495 138667518 -20932265 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 2 1642 400 268 212 18 chr3 138667622 138667839 -20931944 - MLT2B4 LTR ERVL -286 270 12 2 1642 382 288 152 0 chr3 138667847 138668031 -20931752 - B3 SINE B2 0 216 5 2 1642 731 278 87 103 chr3 138668202 138668368 -20931415 + MTD LTR MaLR 2 167 -252 2 1642 2017 82 18 0 chr3 138668368 138668647 -20931136 + L1_Mus4 LINE L1 6347 6630 -6 2 1642 731 278 87 103 chr3 138668647 138668905 -20930878 + MTD LTR MaLR 168 419 0 2 1642 330 292 34 0 chr3 138669434 138669523 -20930260 + PB1D7 SINE Alu 18 109 -11 2 1642 239 336 8 120 chr3 138669575 138669700 -20930083 + Charlie23a DNA MER1_type 226 336 -3 2 1642 31 26 0 0 chr3 138669814 138669852 -20929931 + AT_rich Low_complexity Low_complexity 1 38 0 2 1642 203 256 0 0 chr3 138671937 138671980 -20927803 + (CA)n Simple_repeat Simple_repeat 2 44 0 2 1642 280 268 89 30 chr3 138672062 138672231 -20927552 - L1MD2 LINE L1 -100 6259 6081 2 1642 745 159 38 0 chr3 138673007 138673139 -20926644 - B1_Mur2 SINE Alu -11 138 2 2 205 692 318 50 23 chr3 138673970 138674228 -20925555 + B4A SINE B4 1 265 -27 2 1643 699 122 64 64 chr3 138674691 138674831 -20924952 - B1_Mur4 SINE Alu 0 150 11 2 1643 498 227 0 0 chr3 138677000 138677263 -20922520 + (CA)n Simple_repeat Simple_repeat 1 263 0 2 1643 457 198 95 28 chr3 138677794 138677919 -20921864 - B1_Mm SINE Alu -9 140 1 2 1643 1201 119 11 5 chr3 138680126 138680311 -20919472 + B2_Mm2 SINE B2 2 187 -8 2 1643 423 0 0 0 chr3 138680534 138680581 -20919202 + (TG)n Simple_repeat Simple_repeat 1 47 0 2 1643 859 77 55 43 chr3 138680831 138680994 -20918789 + Lx LINE L1 6478 6642 -12 2 1643 211 224 41 0 chr3 138682095 138682144 -20917639 - MER5A DNA MER1_type -5 184 134 2 1643 617 298 90 26 chr3 138682325 138682559 -20917224 - B4A SINE B4 -3 289 41 2 1643 273 57 0 0 chr3 138682577 138682612 -20917171 + (A)n Simple_repeat Simple_repeat 1 35 0 2 1643 2310 76 41 0 chr3 138683846 138684160 -20915623 + ORR1A2 LTR MaLR 1 327 0 2 1643 396 0 0 0 chr3 138684423 138684467 -20915316 + (CACAA)n Simple_repeat Simple_repeat 1 44 0 2 1643 203 133 0 0 chr3 138684506 138684536 -20915247 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 2 1643 22 0 0 0 chr3 138685249 138685271 -20914512 + AT_rich Low_complexity Low_complexity 1 22 0 2 1643 492 252 54 77 chr3 138685929 138686097 -20913686 - RSINE1 SINE B4 0 165 2 2 1643 213 39 0 0 chr3 138686559 138686585 -20913198 + (CAGA)n Simple_repeat Simple_repeat 4 29 0 2 1643 762 199 0 0 chr3 138687104 138687240 -20912543 - B1_Mur2 SINE Alu -9 140 5 2 1643 408 325 107 15 chr3 138689057 138689460 -20910323 + L1MA4A LINE L1 4889 5328 -552 2 1643 214 338 59 59 chr3 138689467 138689687 -20910096 + B4A SINE B4 73 292 0 2 1643 228 271 0 17 chr3 138689694 138689754 -20910029 + (CATA)n Simple_repeat Simple_repeat 2 60 0 2 1643 497 315 96 30 chr3 138689758 138690307 -20909476 + L1MA4A LINE L1 5352 5930 -373 2 1643 440 311 74 0 chr3 138690651 138690799 -20908984 + RSINE1 SINE B4 3 161 -4 2 1643 513 32 0 0 chr3 138691684 138691747 -20908036 + (TG)n Simple_repeat Simple_repeat 1 63 0 2 1643 276 163 0 23 chr3 138691765 138691809 -20907974 - B4A SINE B4 -18 274 232 2 1643 638 291 7 19 chr3 138691850 138692004 -20907779 - RSINE1 SINE B4 -6 159 8 2 1643 722 236 146 0 chr3 138692010 138692209 -20907574 - B4A SINE B4 -62 230 3 2 1643 392 275 109 71 chr3 138692313 138692497 -20907286 + MTEa LTR MaLR 25 215 -164 2 1643 398 221 1 39 chr3 138692972 138693074 -20906709 + B1_Mur1 SINE Alu 23 148 -1 2 1643 1047 231 28 5 chr3 138693099 138693312 -20906471 + ID_B1 SINE B4 7 224 0 2 1643 339 286 161 0 chr3 138693330 138693442 -20906341 + B1F1 SINE Alu 1 130 -19 2 1643 251 345 15 121 chr3 138693442 138693453 -20906330 + ID_B1 SINE B4 118 190 -34 2 1643 794 341 54 15 chr3 138694376 138694712 -20905071 + MLT2D LTR ERVL 1 349 -65 2 1643 22 70 0 0 chr3 138694985 138695028 -20904755 + AT_rich Low_complexity Low_complexity 1 43 0 2 1643 490 224 159 29 chr3 138695150 138695288 -20904495 + RSINE1 SINE B4 2 157 -8 2 1643 355 239 11 32 chr3 138695833 138695928 -20903855 - B4A SINE B4 -123 169 77 2 1643 270 297 32 21 chr3 138696035 138696128 -20903655 + MER5A1 DNA MER1_type 16 109 -57 2 1643 657 273 118 37 chr3 138696210 138696480 -20903303 - ORR1D2 LTR MaLR -78 292 1 2 1643 226 281 0 15 chr3 138696649 138696714 -20903069 - MER3 DNA MER1_type -107 102 39 2 1643 392 278 4 0 chr3 138696739 138696853 -20902930 + B3 SINE B2 4 119 -74 2 1643 25 31 0 0 chr3 138696893 138696925 -20902858 + AT_rich Low_complexity Low_complexity 1 32 0 2 1643 387 0 0 0 chr3 138696925 138696968 -20902815 + (CA)n Simple_repeat Simple_repeat 2 44 0 2 1643 393 39 0 0 chr3 138696970 138697021 -20902762 + (GA)n Simple_repeat Simple_repeat 1 51 0 2 1643 1523 278 44 7 chr3 138697031 138697466 -20902317 + Lx6 LINE L1 7010 7460 0 2 1643 931 224 140 15 chr3 138698420 138698755 -20901028 + Lx7 LINE L1 7305 7681 -15 2 1643 518 277 91 10 chr3 138698866 138699063 -20900720 + ID_B1 SINE B4 8 220 -4 2 1643 399 83 0 0 chr3 138699140 138699200 -20900583 + (TG)n Simple_repeat Simple_repeat 2 61 0 2 1643 488 346 6 37 chr3 138700068 138700228 -20899555 - RSINE1 SINE B4 -2 163 9 2 1643 672 136 0 18 chr3 138700228 138700340 -20899443 + RMER13A LTR ERVK 1 110 -750 2 1643 1787 173 143 146 chr3 138700334 138700406 -20899377 + RMER13A LTR ERVK 227 297 -563 2 1643 312 27 0 0 chr3 138700406 138700443 -20899340 + (GTATG)n Simple_repeat Simple_repeat 1 37 0 2 1643 2235 92 136 11 chr3 138700443 138700817 -20898966 + BGLII LTR ERVK 1 421 0 2 1643 1787 173 143 146 chr3 138700817 138701352 -20898431 + RMER13A LTR ERVK 298 832 -28 2 1643 1215 48 0 0 chr3 138701674 138701821 -20897962 + B1_Mus2 SINE Alu 1 147 0 2 1643 189 121 0 0 chr3 138701821 138701854 -20897929 + (A)n Simple_repeat Simple_repeat 1 33 0 2 1643 1010 249 31 21 chr3 138702289 138702576 -20897207 - MTD LTR MaLR -95 324 1 2 1643 404 297 34 55 chr3 138702828 138702853 -20896930 + ID_B1 SINE B4 73 215 -9 2 1643 569 244 0 16 chr3 138702853 138702974 -20896809 + B1F1 SINE Alu 22 140 -9 2 1643 405 219 236 13 chr3 138703164 138703321 -20896462 - Tigger7 DNA MER2_type -80 2411 2220 2 1643 471 35 0 0 chr3 138703321 138703378 -20896405 + (TC)n Simple_repeat Simple_repeat 1 57 0 2 1643 1275 304 63 36 chr3 138703420 138703925 -20895858 - Tigger7 DNA MER2_type -1811 680 162 2 1643 309 300 60 113 chr3 138704486 138704734 -20895049 - L1MC4 LINE L1 -5216 999 765 2 1643 567 259 84 95 chr3 138704865 138705138 -20894645 + MTEb LTR MaLR 1 270 -109 2 1643 249 268 94 31 chr3 138705183 138705310 -20894473 + MTEb LTR MaLR 243 377 -2 2 1643 739 272 32 5 chr3 138706008 138706193 -20893590 - B3 SINE B2 -25 191 2 2 1643 201 74 0 0 chr3 138706204 138706231 -20893552 + (TTTTC)n Simple_repeat Simple_repeat 2 28 0 2 1643 822 163 8 0 chr3 138706249 138706378 -20893405 - B3 SINE B2 -86 130 1 2 1643 2053 276 131 16 chr3 138707373 138708195 -20891588 + Lx8 LINE L1 6552 7468 -5 2 1643 294 297 40 0 chr3 138708226 138708300 -20891483 + PB1D9 SINE Alu 33 109 -11 2 1643 4121 218 47 53 chr3 138708380 138708987 -20890796 + Lx9 LINE L1 6305 6935 -709 2 1643 1070 63 28 7 chr3 138708987 138709130 -20890653 + B1_Mus2 SINE Alu 1 146 -1 2 1643 4121 218 47 53 chr3 138709130 138709710 -20890073 + Lx9 LINE L1 6936 7485 -159 2 1643 623 226 64 90 chr3 138710310 138710543 -20889240 - RMER12 LTR ERVK -101 1221 995 2 1643 25 0 0 0 chr3 138710571 138710596 -20889187 + AT_rich Low_complexity Low_complexity 1 25 0 2 1643 1940 234 46 60 chr3 138710752 138711550 -20888233 - RMER12 LTR ERVK -1071 777 1 2 1643 267 365 34 46 chr3 138712236 138712411 -20887372 + MTEa LTR MaLR 8 180 -179 2 1643 283 253 101 0 chr3 138712426 138712505 -20887278 + MTEa LTR MaLR 256 342 -37 2 1643 186 103 0 0 chr3 138713939 138713968 -20885815 + (TG)n Simple_repeat Simple_repeat 2 30 0 2 1643 342 306 130 0 chr3 138713974 138714082 -20885701 - RSINE1 SINE B4 -13 152 31 2 1643 935 282 186 21 chr3 138714330 138715047 -20884736 - Charlie1 DNA MER1_type -50 2731 1897 2 1643 980 223 0 33 chr3 138715259 138715472 -20884311 + B3 SINE B2 2 207 -9 2 1643 300 53 0 0 chr3 138715649 138715687 -20884096 + (TG)n Simple_repeat Simple_repeat 2 39 0 2 1643 899 171 209 0 chr3 138715932 138716119 -20883664 - URR1A DNA MER1_type 0 226 1 2 1643 609 266 7 7 chr3 138716273 138716417 -20883366 - B1_Mur1 SINE Alu 0 149 6 2 1643 3965 17 0 0 chr3 138717784 138718263 -20881520 - L1_Mm LINE L1 -525 5358 4880 2 1643 2557 37 9 3 chr3 138718263 138718613 -20881170 + L1Md_A LINE L1 6256 6582 0 2 1643 728 227 5 67 chr3 138718641 138718849 -20880934 - B3A SINE B2 0 198 4 2 1643 313 280 69 10 chr3 138718856 138718957 -20880826 - PB1D10 SINE Alu -1 116 10 2 1643 720 188 31 0 chr3 138719039 138719167 -20880616 + B1_Mus2 SINE Alu 1 132 -15 3 1643 369 0 0 0 chr3 138719167 138719208 -20880575 + (CAAA)n Simple_repeat Simple_repeat 1 41 0 3 1643 872 118 71 13 chr3 138719323 138719478 -20880305 + URR1A DNA MER1_type 63 226 0 3 1643 304 324 56 0 chr3 138719581 138719689 -20880094 + L1ME2 LINE L1 6043 6156 -8 3 1643 407 313 25 50 chr3 138719881 138720002 -20879781 + PB1 SINE Alu 1 118 -9 3 1643 674 141 98 38 chr3 138720080 138720213 -20879570 - B1_Mus2 SINE Alu -6 141 1 3 1643 337 263 26 0 chr3 138720404 138720480 -20879303 - ID4 SINE ID -2 81 4 3 1643 1738 121 75 47 chr3 138720724 138721044 -20878739 - MTC LTR MaLR -92 329 1 3 1643 500 299 98 0 chr3 138721690 138721854 -20877929 + MTEb LTR MaLR 1 180 -199 3 1643 282 167 40 40 chr3 138721849 138721924 -20877859 + B1_Mur4 SINE Alu 74 148 -2 3 1643 248 277 47 47 chr3 138721969 138722075 -20877708 + MTEb LTR MaLR 243 348 -31 3 1643 1347 92 5 31 chr3 138722357 138722548 -20877235 - B2_Mm1a SINE B2 -6 187 2 3 1643 413 228 49 10 chr3 138722630 138722732 -20877051 + RMER19B LTR ERVK 1 106 -796 3 1643 2832 145 223 13 chr3 138722733 138723411 -20876372 + RMER19B LTR ERVK 56 875 -27 3 1643 394 172 0 20 chr3 138724969 138725070 -20874713 + CT-rich Low_complexity Low_complexity 3 101 0 3 1643 393 331 123 15 chr3 138725570 138725831 -20873952 + B4 SINE B4 2 290 -2 3 1643 189 0 0 0 chr3 138725927 138725948 -20873835 + (TTC)n Simple_repeat Simple_repeat 2 22 0 3 1643 961 189 48 0 chr3 138726312 138726518 -20873265 + B3 SINE B2 1 216 0 3 1643 239 51 0 71 chr3 138726567 138726609 -20873174 + (TCCA)n Simple_repeat Simple_repeat 3 41 0 3 1643 475 337 82 45 chr3 138727243 138727597 -20872186 - MLT1G LTR MaLR 0 591 225 3 1643 22 0 0 0 chr3 138729125 138729147 -20870636 + AT_rich Low_complexity Low_complexity 1 22 0 3 1643 342 0 0 0 chr3 138729280 138729318 -20870465 + (TTATA)n Simple_repeat Simple_repeat 5 42 0 3 1643 805 250 40 5 chr3 138729590 138729791 -20869992 - B3 SINE B2 -8 208 1 3 1643 718 270 122 25 chr3 138730615 138730942 -20868841 + Cheshire DNA MER1_type 448 806 -1614 3 1643 332 212 113 113 chr3 138731311 138731497 -20868286 + RMER15 LTR ERVL 376 561 -14 3 1643 222 211 0 0 chr3 138731503 138731541 -20868242 + B4 SINE B4 8 45 -247 3 1643 286 288 70 91 chr3 138731897 138732084 -20867699 + Cheshire DNA MER1_type 1261 1443 -977 3 1643 351 0 0 0 chr3 138732121 138732160 -20867623 + (CA)n Simple_repeat Simple_repeat 2 40 0 3 1643 2226 171 110 15 chr3 138732458 138732939 -20866844 + RLTR11A2 LTR ERVK 1 527 0 3 1643 531 254 134 73 chr3 138733180 138733494 -20866289 + Cheshire DNA MER1_type 2088 2420 0 3 1643 366 200 62 10 chr3 138733550 138733646 -20866137 + MER5A DNA MER1_type 88 188 -1 3 1643 225 225 152 29 chr3 138733830 138733935 -20865848 + MER63D DNA AcHobo 25 142 -919 3 1643 261 98 0 0 chr3 138734194 138734235 -20865548 + (TCTG)n Simple_repeat Simple_repeat 2 42 0 3 1643 292 230 0 121 chr3 138735268 138735367 -20864416 - B1F1 SINE Alu -59 90 4 3 1643 21 0 0 0 chr3 138736680 138736701 -20863082 + AT_rich Low_complexity Low_complexity 1 21 0 3 1643 21 82 0 0 chr3 138737797 138737846 -20861937 + GC_rich Low_complexity Low_complexity 1 49 0 3 1643 24 85 0 0 chr3 138738121 138738180 -20861603 + GC_rich Low_complexity Low_complexity 1 59 0 3 1643 252 111 0 0 chr3 138738180 138738225 -20861558 + (CGGGG)n Simple_repeat Simple_repeat 3 47 0 3 1643 267 157 0 0 chr3 138738253 138738304 -20861479 + (CGGG)n Simple_repeat Simple_repeat 4 54 0 3 1643 558 51 13 0 chr3 138738969 138739047 -20860736 - B1_Mus2 SINE Alu -17 130 52 3 1643 23 0 0 0 chr3 138739056 138739079 -20860704 + AT_rich Low_complexity Low_complexity 1 23 0 3 1643 474 256 178 5 chr3 138739581 138739766 -20860017 - MLT1C LTR MaLR -202 265 49 3 1643 288 0 0 0 chr3 138740291 138740323 -20859460 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 3 1643 394 267 68 17 chr3 138740331 138740449 -20859334 - B1F1 SINE Alu -19 130 7 3 1643 1097 147 29 114 chr3 138740509 138740755 -20859028 + URR1B DNA MER1_type 1 225 0 3 1643 875 225 5 5 chr3 138741067 138741259 -20858524 + B3 SINE B2 24 215 -1 3 1643 1970 124 83 15 chr3 138741345 138741681 -20858102 + RLTR15 LTR ERVK 1 359 0 3 1643 1160 232 70 26 chr3 138742686 138743031 -20856752 - MTEa LTR MaLR -7 372 13 3 1643 270 106 0 0 chr3 138743812 138743859 -20855924 + (TTTG)n Simple_repeat Simple_repeat 1 47 0 3 1643 792 158 13 33 chr3 138743859 138744010 -20855773 - B1_Mur4 SINE Alu -1 149 2 3 1643 499 272 168 8 chr3 138744144 138744400 -20855383 + Lx8 LINE L1 6958 7254 -219 3 1643 542 270 43 68 chr3 138744561 138744805 -20854978 + B4A SINE B4 1 256 -36 3 1643 449 96 0 12 chr3 138744836 138744895 -20854888 + (TC)n Simple_repeat Simple_repeat 2 59 0 3 1643 243 0 0 0 chr3 138744895 138744922 -20854861 + (CA)n Simple_repeat Simple_repeat 2 28 0 3 1643 449 96 0 12 chr3 138744922 138744946 -20854837 + (TC)n Simple_repeat Simple_repeat 2 25 0 3 1643 564 293 97 25 chr3 138744975 138745294 -20854489 + L1MB2 LINE L1 5823 6164 -7 3 1643 592 269 12 36 chr3 138745516 138745682 -20854101 - MLT1A1 LTR MaLR -56 352 191 3 1643 1170 68 0 0 chr3 138745995 138746143 -20853640 - B1_Mus1 SINE Alu 0 148 1 3 1643 442 299 51 19 chr3 138746579 138746736 -20853047 - RSINE1 SINE B4 0 165 4 3 1643 328 307 31 23 chr3 138747215 138747345 -20852438 + Tigger14a DNA MER2_type 2 132 -192 3 1643 705 251 5 30 chr3 138747376 138747577 -20852206 - MLT1D LTR MaLR 0 505 310 3 1643 541 262 99 32 chr3 138747591 138747812 -20851971 - MLT1D LTR MaLR -246 259 24 3 1643 307 254 42 0 chr3 138748553 138748624 -20851159 - ID SINE ID -149 75 2 3 1643 419 289 0 3 chr3 138748799 138748920 -20850863 + B1_Mur3 SINE Alu 10 128 -21 3 1643 182 308 88 22 chr3 138750206 138750342 -20849441 - L2 LINE L2 -1324 2095 1951 3 1643 3301 26 39 0 chr3 138751111 138751492 -20848291 + MTA_Mm LTR MaLR 1 396 0 3 1643 253 278 51 85 chr3 138751873 138751991 -20847792 - MLT1H2 LTR MaLR -57 432 319 3 1643 830 185 12 0 chr3 138752080 138752253 -20847530 + CT-rich Low_complexity Low_complexity 2 176 0 3 1643 993 131 91 0 chr3 138752683 138752859 -20846924 - B2_Mm1t SINE B2 -1 192 1 3 1643 973 282 166 54 chr3 138753018 138753847 -20845936 - Charlie7 DNA MER1_type -264 2348 1427 3 1643 638 293 22 31 chr3 138754397 138754619 -20845164 + B4A SINE B4 5 224 -68 3 1643 4615 287 42 36 chr3 138754627 138757088 -20842695 + Lx8 LINE L1 4987 7472 -1 3 1643 261 0 0 0 chr3 138757101 138757130 -20842653 + (CA)n Simple_repeat Simple_repeat 2 30 0 3 1643 269 359 139 32 chr3 138758018 138758777 -20841006 + L2a LINE L2 2539 3389 -37 3 1643 1023 47 0 0 chr3 138759611 138759740 -20840043 + (CA)n Simple_repeat Simple_repeat 2 130 0 3 1643 407 335 55 35 chr3 138760744 138760945 -20838838 - MER58A DNA MER1_type 0 224 20 3 1643 1009 206 40 5 chr3 138761056 138761256 -20838527 - B3 SINE B2 -5 211 5 3 1643 21 0 0 0 chr3 138761268 138761289 -20838494 + AT_rich Low_complexity Low_complexity 1 21 0 3 1643 2063 156 117 0 chr3 138761568 138761920 -20837863 - ORR1B1 LTR MaLR -1 393 1 3 1643 263 252 160 63 chr3 138762248 138762554 -20837229 - MTEa LTR MaLR -18 361 14 3 1643 615 176 39 16 chr3 138763024 138763151 -20836632 + B1_Mur3 SINE Alu 20 149 0 3 1643 323 300 12 12 chr3 138763453 138763534 -20836249 + ID SINE ID 2 82 -142 3 1643 841 147 13 0 chr3 138763568 138763724 -20836059 + GA-rich Low_complexity Low_complexity 3 160 0 3 1643 1214 48 0 0 chr3 138763891 138764038 -20835745 - B1_Mus2 SINE Alu 0 147 1 3 1643 5785 40 1 3 chr3 138764085 138764771 -20835012 - L1Md_F2 LINE L1 -12 6570 5886 3 1643 1898 136 19 77 chr3 138764812 138765187 -20834596 - ORR1B1 LTR MaLR -1 393 41 3 1643 2175 161 72 25 chr3 138765556 138765958 -20833825 - MTC LTR MaLR 0 421 1 3 1643 22 0 0 0 chr3 138766658 138766680 -20833103 + AT_rich Low_complexity Low_complexity 1 22 0 3 1643 24 0 0 0 chr3 138767351 138767375 -20832408 + AT_rich Low_complexity Low_complexity 1 24 0 3 1643 23 0 0 0 chr3 138767430 138767453 -20832330 + AT_rich Low_complexity Low_complexity 1 23 0 3 1643 32 43 0 0 chr3 138767628 138767674 -20832109 + AT_rich Low_complexity Low_complexity 1 46 0 3 1643 253 260 40 14 chr3 138767852 138767926 -20831857 + PB1D10 SINE Alu 13 88 -29 3 1643 356 298 0 0 chr3 138767932 138768016 -20831767 + RSINE1 SINE B4 3 86 -79 3 1643 22 0 0 0 chr3 138768089 138768111 -20831672 + AT_rich Low_complexity Low_complexity 1 22 0 3 1643 264 329 67 27 chr3 138768480 138768630 -20831153 + MIRc SINE MIR 15 170 -98 3 1643 522 0 0 0 chr3 138769119 138769177 -20830606 + (TC)n Simple_repeat Simple_repeat 1 58 0 3 1643 1491 209 75 43 chr3 138769888 138770263 -20829520 - MTD LTR MaLR -12 407 21 3 1643 241 278 124 0 chr3 138771259 138771356 -20828427 + MLT1J LTR MaLR 77 185 -327 3 1643 1130 75 0 0 chr3 138771769 138771916 -20827867 + B1_Mus1 SINE Alu 2 148 0 3 1643 1614 248 75 20 chr3 138772300 138772752 -20827031 + Lx2B LINE L1 6520 6996 -4 3 1643 255 127 0 68 chr3 138773682 138773741 -20826042 - MTC LTR MaLR -7 412 358 3 1643 228 242 109 73 chr3 138773750 138773915 -20825868 - RLTR15 LTR ERVK -11 348 178 3 1643 252 0 0 0 chr3 138773945 138773973 -20825810 + (TC)n Simple_repeat Simple_repeat 2 29 0 3 1643 274 208 13 13 chr3 138773981 138774059 -20825724 - RLTR15 LTR ERVK -279 80 3 3 1643 1608 156 79 74 chr3 138774059 138774425 -20825358 - MTC LTR MaLR -53 368 1 3 1643 388 226 83 0 chr3 138774556 138774640 -20825143 - Lx8 LINE L1 -352 7121 7031 3 1643 1773 277 108 36 chr3 138775685 138776349 -20823434 + Lx8 LINE L1 6422 7133 -340 4 1643 2058 112 12 30 chr3 138776489 138776770 -20823013 + ORR1A2 LTR MaLR 1 282 -45 4 1643 7436 29 0 0 chr3 138776770 138777621 -20822162 + L1Md_A LINE L1 5732 6582 0 4 1643 2058 112 12 30 chr3 138777621 138777670 -20822113 + ORR1A2 LTR MaLR 283 325 -2 4 1643 491 277 118 98 chr3 138777672 138777931 -20821852 - MLT1D LTR MaLR -112 393 102 4 1643 4907 56 14 3 chr3 138777931 138778521 -20821262 + L1Md_F2 LINE L1 5986 6581 -1 4 1643 491 277 118 98 chr3 138778521 138778548 -20821235 - MLT1D LTR MaLR -404 101 88 4 1643 2377 172 50 7 chr3 138778548 138778952 -20820831 + MTC LTR MaLR 1 421 0 4 1643 491 277 118 98 chr3 138778952 138779012 -20820771 - MLT1D LTR MaLR -418 87 39 4 1643 252 86 0 0 chr3 138779106 138779141 -20820642 + (TA)n Simple_repeat Simple_repeat 1 35 0 4 1643 466 292 47 90 chr3 138779219 138779520 -20820263 + L1MA4 LINE L1 5728 6015 -285 4 1643 475 274 175 11 chr3 138779563 138779740 -20820043 + B4A SINE B4 1 206 -86 4 1643 307 0 47 0 chr3 138781220 138781263 -20818520 + (TC)n Simple_repeat Simple_repeat 2 46 0 4 1643 731 201 116 5 chr3 138781345 138781560 -20818223 - Lx9 LINE L1 -6 7638 7400 4 1643 556 167 10 0 chr3 138781559 138781655 -20818128 + Lx9 LINE L1 7318 7414 -230 4 1643 239 235 34 34 chr3 138781986 138782074 -20817709 + MER20B DNA MER1_type 541 628 -155 4 1643 293 356 112 60 chr3 138783275 138783660 -20816123 + L2c LINE L2 2943 3347 -40 4 1643 210 91 0 0 chr3 138783743 138783776 -20816007 + (TTG)n Simple_repeat Simple_repeat 1 33 0 4 1643 189 0 0 0 chr3 138783776 138783797 -20815986 + (TGG)n Simple_repeat Simple_repeat 3 23 0 4 1643 2355 249 56 25 chr3 138784256 138784660 -20815123 + Lx9 LINE L1 6302 6727 -917 4 1643 3454 41 5 8 chr3 138784660 138785057 -20814726 - MTA_Mm LTR MaLR 0 396 1 4 1643 2355 249 56 25 chr3 138785057 138785257 -20814526 + Lx9 LINE L1 6728 6925 -719 4 1643 1126 244 28 14 chr3 138785252 138785539 -20814244 + Lx9 LINE L1 7183 7473 -171 4 1643 25 0 0 0 chr3 138785628 138785653 -20814130 + AT_rich Low_complexity Low_complexity 1 25 0 4 1643 609 334 64 61 chr3 138786036 138786145 -20813638 + MLT1C LTR MaLR 53 160 -307 4 1643 363 23 0 0 chr3 138786145 138786189 -20813594 + (TTTA)n Simple_repeat Simple_repeat 2 45 0 4 1643 609 334 64 61 chr3 138786189 138786487 -20813296 + MLT1C LTR MaLR 161 460 -7 4 1643 3018 49 36 75 chr3 138786587 138787003 -20812780 + MTB LTR MaLR 1 400 0 4 1643 302 275 57 24 chr3 138787198 138787321 -20812462 - RMER20B LTR ERVK -264 363 237 4 1643 1211 283 32 57 chr3 138788744 138788945 -20810838 + MTEa LTR MaLR 18 215 -164 4 1643 3318 74 2 29 chr3 138788945 138789363 -20810420 + MTB_Mm LTR MaLR 1 407 0 4 1643 1211 283 32 57 chr3 138789363 138789532 -20810251 + MTEa LTR MaLR 216 379 0 4 1643 207 0 0 0 chr3 138790058 138790081 -20809702 + (CA)n Simple_repeat Simple_repeat 2 24 0 4 1643 923 189 178 0 chr3 138790458 138790649 -20809134 + URR1B DNA MER1_type 1 225 0 4 1643 677 261 7 0 chr3 138790678 138790816 -20808967 + B1_Mur2 SINE Alu 1 139 -10 4 1643 198 0 0 0 chr3 138790818 138790840 -20808943 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 4 1643 191 62 62 0 chr3 138791143 138791175 -20808608 + (TTTTTA)n Simple_repeat Simple_repeat 2 35 0 4 1643 1169 43 0 14 chr3 138791820 138791960 -20807823 + B1_Mm SINE Alu 1 138 -9 4 1643 243 311 64 43 chr3 138791960 138792054 -20807729 - RSINE1 SINE B4 -2 163 68 4 1643 363 348 17 35 chr3 138792045 138792161 -20807622 - B4 SINE B4 -96 196 83 4 1643 538 309 55 45 chr3 138792261 138792552 -20807231 - Lx9 LINE L1 -207 7437 7144 4 1643 655 234 69 25 chr3 138793017 138793219 -20806564 + B3 SINE B2 2 212 -4 4 1643 5473 70 67 4 chr3 138793491 138794209 -20805574 - Lx3_Mus LINE L1 -8 7001 6239 4 1643 314 338 139 16 chr3 138794707 138794786 -20804997 + L2a LINE L2 2809 2887 -532 4 1643 186 43 0 0 chr3 138794786 138794809 -20804974 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 4 1643 319 305 133 36 chr3 138794809 138795124 -20804659 + L2a LINE L2 2888 3239 -187 4 1643 683 193 205 0 chr3 138795189 138795360 -20804423 - URR1B DNA MER1_type 0 225 20 4 1643 484 301 20 33 chr3 138795374 138795525 -20804258 + MER20 DNA MER1_type 71 219 0 4 1643 264 305 9 71 chr3 138795998 138796111 -20803672 + PB1D10 SINE Alu 1 106 -11 4 1643 222 208 0 40 chr3 138796183 138796233 -20803550 + CT-rich Low_complexity Low_complexity 3 50 0 4 1643 1001 177 37 37 chr3 138796516 138796704 -20803079 + B2_Mm2 SINE B2 1 188 -7 4 1643 1353 108 17 0 chr3 138796861 138797037 -20802746 + B2_Mm2 SINE B2 2 180 -15 4 1643 4598 48 0 0 chr3 138797277 138797803 -20801980 - L1Md_F2 LINE L1 0 6582 6057 4 1643 231 36 0 0 chr3 138797818 138797846 -20801937 + (TAAA)n Simple_repeat Simple_repeat 3 30 0 4 1643 929 272 69 75 chr3 138798305 138798530 -20801253 + ORR1E LTR MaLR 4 235 -124 4 1643 2619 127 54 23 chr3 138798530 138798957 -20800826 + BGLII_B LTR ERVK 2 441 0 4 1643 929 272 69 75 chr3 138798957 138799080 -20800703 + ORR1E LTR MaLR 236 350 -9 4 1643 1103 230 37 99 chr3 138799469 138799763 -20800020 + B4A SINE B4 1 276 -16 4 1643 201 102 0 75 chr3 138799776 138799829 -20799954 + (CATA)n Simple_repeat Simple_repeat 2 50 0 4 1643 195 42 0 0 chr3 138800254 138800278 -20799505 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 4 1643 557 154 50 17 chr3 138800565 138800684 -20799099 - ORR1D2 LTR MaLR 0 370 248 4 1643 359 218 101 76 chr3 138800692 138800811 -20798972 - ORR1D2 LTR MaLR -248 122 1 4 1643 198 0 0 0 chr3 138800894 138800916 -20798867 + (A)n Simple_repeat Simple_repeat 1 22 0 4 1643 1214 136 27 5 chr3 138800919 138801104 -20798679 + B2_Mm2 SINE B2 1 189 -6 4 1643 698 303 108 90 chr3 138801453 138802000 -20797783 - MER89 LTR ERV1 0 559 3 4 1643 226 348 109 6 chr3 138802318 138802474 -20797309 - MTEa LTR MaLR -1 378 207 4 1643 2274 127 95 5 chr3 138802496 138802875 -20796908 + MTC LTR MaLR 1 413 -8 4 1643 1223 126 191 12 chr3 138802883 138803124 -20796659 + MTC-int LTR MaLR 16 299 -959 4 1643 2684 40 12 0 chr3 138803124 138803477 -20796306 + L1Md_F2 LINE L1 6234 6582 0 4 1643 230 278 0 0 chr3 138803477 138803531 -20796252 + MTC-int LTR MaLR 295 348 -910 4 1643 4806 166 40 25 chr3 138803565 138804288 -20795495 + MTC-int LTR MaLR 332 1064 -194 4 1643 261 0 0 0 chr3 138804288 138804317 -20795466 + (TTTTA)n Simple_repeat Simple_repeat 4 32 0 4 1643 3622 79 2 15 chr3 138804326 138804800 -20794983 - L1_Mus2 LINE L1 0 6566 6099 4 1643 4806 166 40 25 chr3 138804800 138804979 -20794804 + MTC-int LTR MaLR 1069 1257 -1 4 205 726 278 5 62 chr3 138805060 138805252 -20794531 - MTEa LTR MaLR -196 183 3 4 1644 384 349 17 11 chr3 138806368 138806545 -20793238 + MLT1D LTR MaLR 310 487 -18 4 1644 378 304 174 0 chr3 138807107 138807222 -20792561 + ID_B1 SINE B4 79 213 -11 4 1644 1141 81 0 18 chr3 138807254 138807417 -20792366 + B2_Mm2 SINE B2 18 177 -18 4 1644 756 157 0 0 chr3 138807480 138807646 -20792137 + (CCAA)n Simple_repeat Simple_repeat 2 167 0 4 1644 21 57 0 0 chr3 138807772 138807807 -20791976 + AT_rich Low_complexity Low_complexity 1 35 0 4 1644 906 254 154 28 chr3 138807925 138808386 -20791397 + L1ME3A LINE L1 5458 5976 -197 4 1644 252 289 55 47 chr3 138808496 138808623 -20791160 - MLT1A1 LTR MaLR 0 408 281 4 1644 270 248 157 8 chr3 138808920 138809054 -20790729 + L1MEg LINE L1 1689 1842 -4400 4 1644 237 268 121 35 chr3 138809087 138809203 -20790580 - MER33 DNA MER1_type -194 130 5 4 1644 478 345 10 45 chr3 138809220 138809420 -20790363 + MER20 DNA MER1_type 7 199 -20 4 1644 317 289 26 0 chr3 138809420 138809496 -20790287 + ID4_ SINE ID 5 82 -1 4 1644 231 300 70 0 chr3 138809963 138810063 -20789720 + L1MEg LINE L1 2297 2403 -3743 4 1644 21 89 0 0 chr3 138810542 138810598 -20789185 + AT_rich Low_complexity Low_complexity 1 56 0 4 1644 453 249 0 0 chr3 138810773 138810950 -20788833 + (TG)n Simple_repeat Simple_repeat 1 177 0 4 1644 827 289 85 22 chr3 138810950 138811222 -20788561 - B4A SINE B4 0 292 4 4 1644 184 414 18 9 chr3 138811587 138811699 -20788084 + MIR SINE MIR 4 116 -146 4 1644 325 225 28 14 chr3 138811731 138811803 -20787980 - ID_B1 SINE B4 -1 223 151 4 1644 187 255 20 0 chr3 138811803 138811854 -20787929 + MIR SINE MIR 131 182 -80 4 1644 840 217 86 29 chr3 138812013 138812222 -20787561 + ID_B1 SINE B4 3 223 -1 4 1644 247 258 36 82 chr3 138812555 138812665 -20787118 - L1ME4a LINE L1 -30 6094 5990 4 1644 398 298 206 0 chr3 138812767 138812898 -20786885 + RSINE1 SINE B4 2 159 -6 4 1644 393 58 0 0 chr3 138812906 138812958 -20786825 + (CA)n Simple_repeat Simple_repeat 1 52 0 4 1644 271 346 107 62 chr3 138813056 138813281 -20786502 + MLT1J LTR MaLR 230 464 -48 4 1644 242 335 70 54 chr3 138813598 138813784 -20785999 + MLT1L LTR MaLR 210 398 -212 4 1644 288 313 67 43 chr3 138813875 138814016 -20785767 - L2a LINE L2 -35 3391 3246 4 1644 366 206 32 0 chr3 138814070 138814133 -20785650 + RSINE1 SINE B4 67 131 -34 4 1644 21 36 0 0 chr3 138814169 138814197 -20785586 + AT_rich Low_complexity Low_complexity 1 28 0 4 1644 1277 137 26 40 chr3 138814425 138814653 -20785130 - MT2C_Mm LTR ERVL 0 475 251 4 1644 1606 253 41 95 chr3 138814810 138815926 -20783857 + RMER1A Other Other 1 596 -434 4 1644 239 353 0 0 chr3 138816227 138816312 -20783471 + (TG)n Simple_repeat Simple_repeat 2 86 0 4 1644 881 250 143 12 chr3 138816318 138816569 -20783214 - B4A SINE B4 -7 285 2 4 1644 642 333 34 28 chr3 138817563 138817887 -20781896 + MER20B DNA MER1_type 182 507 -276 4 1644 1566 126 40 4 chr3 138817933 138818181 -20781602 - RLTR22_Mur LTR ERVK 0 1848 1592 4 1644 4215 119 94 9 chr3 138818337 138819082 -20780701 - RLTR22_Mur LTR ERVK -1040 808 1 4 1644 531 92 0 0 chr3 138819190 138819277 -20780506 + (CA)n Simple_repeat Simple_repeat 2 88 0 4 1644 584 206 74 9 chr3 138820720 138820828 -20778955 + PB1D7 SINE Alu 2 116 -4 4 1644 933 140 0 17 chr3 138821008 138821189 -20778594 + GA-rich Low_complexity Low_complexity 2 179 0 4 1644 1145 275 29 118 chr3 138821209 138821625 -20778158 + MTE2a LTR MaLR 1 379 0 4 1644 363 272 0 0 chr3 138821678 138821759 -20778024 + ID4 SINE ID 3 83 0 4 1644 1239 68 0 7 chr3 138821829 138821976 -20777807 - B1_Mm SINE Alu 0 147 2 4 1644 4095 53 6 0 chr3 138822072 138822544 -20777239 - MT2C_Mm LTR ERVL 0 475 1 4 1644 619 276 113 60 chr3 138823081 138823347 -20776436 + B4A SINE B4 12 291 -1 4 1644 261 0 0 0 chr3 138823930 138823959 -20775824 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 4 1644 620 280 187 31 chr3 138823986 138824307 -20775476 - ORR1E LTR MaLR -1 373 3 5 1644 602 203 89 0 chr3 138824407 138824530 -20775253 + B1F1 SINE Alu 5 138 -11 5 1644 297 197 0 0 chr3 138825090 138825151 -20774632 + GA-rich Low_complexity Low_complexity 2 62 0 5 1644 21 71 0 0 chr3 138826256 138826298 -20773485 + AT_rich Low_complexity Low_complexity 1 42 0 5 1644 885 123 63 35 chr3 138826304 138826447 -20773336 - B1_Mur3 SINE Alu -2 147 1 5 1644 320 202 77 161 chr3 138826761 138826891 -20772892 + Lx7 LINE L1 6262 6380 -1316 5 1644 1228 265 66 21 chr3 138826889 138827221 -20772562 + Lx7 LINE L1 6896 7242 -454 5 1644 255 81 0 75 chr3 138827256 138827323 -20772460 + T-rich Low_complexity Low_complexity 4 65 0 5 1644 747 130 0 0 chr3 138827350 138827473 -20772310 + (GA)n Simple_repeat Simple_repeat 1 123 0 5 1644 409 316 18 71 chr3 138827586 138827811 -20771972 + B4A SINE B4 78 290 -2 5 1644 25 31 0 0 chr3 138828373 138828405 -20771378 + AT_rich Low_complexity Low_complexity 1 32 0 5 1644 1006 172 136 0 chr3 138828630 138828828 -20770955 - URR1A DNA MER1_type -1 225 1 5 1644 457 252 76 14 chr3 138829274 138829419 -20770364 - Lx8 LINE L1 -225 7248 7095 5 1644 1978 219 25 7 chr3 138829491 138829876 -20769907 - MTD LTR MaLR -14 405 31 5 1644 579 174 37 29 chr3 138830315 138830451 -20769332 + ORR1D2 LTR MaLR 3 139 -235 5 1644 1934 111 0 115 chr3 138830465 138830822 -20768961 + ORR1A4 LTR MaLR 12 327 -2 5 1644 1046 247 13 34 chr3 138830824 138831063 -20768720 + ORR1D2 LTR MaLR 137 370 0 5 1644 456 286 79 0 chr3 138831626 138831766 -20768017 + MamRep605 Unknown Unknown 390 540 -336 5 1644 236 286 24 72 chr3 138832253 138832336 -20767447 - ID4_ SINE ID -4 79 1 5 1644 871 137 22 0 chr3 138833289 138833428 -20766355 - B1_Mus1 SINE Alu 0 148 7 5 1644 832 149 7 28 chr3 138833783 138833928 -20765855 - RMER5 LTR ERV1 0 534 393 5 1644 1204 223 15 31 chr3 138833946 138834195 -20765588 - RMER5 LTR ERV1 -275 259 14 5 1644 243 0 0 0 chr3 138834195 138834222 -20765561 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 5 1644 2126 155 6 3 chr3 138834378 138834715 -20765068 - MTC LTR MaLR -83 338 1 5 1644 610 248 112 92 chr3 138835785 138836280 -20763503 - RLTR11B LTR ERVK 0 568 1 5 1644 514 300 69 13 chr3 138837146 138837450 -20762333 + L1MC4 LINE L1 7322 7642 -400 5 1644 289 316 0 0 chr3 138837466 138837542 -20762241 + ID4_ SINE ID 2 77 -6 5 1644 236 235 78 161 chr3 138837557 138837800 -20761983 - RMER10A LTR ERVL -15 427 205 5 1644 3996 61 40 11 chr3 138838003 138838547 -20761236 - LTRIS2 LTR ERV1 0 564 5 5 1644 322 283 0 108 chr3 138838580 138838691 -20761092 + ID_B1 SINE B4 122 220 -4 5 1644 393 22 0 0 chr3 138838784 138838830 -20760953 + (CATA)n Simple_repeat Simple_repeat 2 47 0 5 1644 2047 185 55 80 chr3 138839187 138839640 -20760143 + RLTR24 LTR ERV1 1 442 -87 5 1644 882 162 0 0 chr3 138839655 138839815 -20759968 + GA-rich Low_complexity Low_complexity 4 163 0 5 1644 374 119 60 0 chr3 138839828 138839895 -20759888 + RLTR24 LTR ERV1 459 529 0 5 1644 3889 153 69 7 chr3 138840677 138841030 -20758753 + RMER6D LTR ERVK 1 368 -352 5 1644 279 0 0 0 chr3 138841030 138841061 -20758722 + (TG)n Simple_repeat Simple_repeat 1 31 0 5 1644 3889 153 69 7 chr3 138841061 138841385 -20758398 + RMER6D LTR ERVK 369 720 0 5 1644 578 224 17 40 chr3 138841508 138841685 -20758098 - Lx7 LINE L1 0 7696 7524 5 1644 1356 132 81 8 chr3 138841714 138841806 -20757977 - L1_Mur3 LINE L1 -1679 4201 4109 5 1644 2803 32 12 0 chr3 138841806 138842149 -20757634 + L1Md_F3 LINE L1 6238 6584 0 5 1644 1356 132 81 8 chr3 138842149 138842315 -20757468 - L1_Mur3 LINE L1 -1772 4108 3926 5 1644 1620 201 92 39 chr3 138842313 138842877 -20756906 - L1_Mur3 LINE L1 -7073 655 62 5 1644 34271 61 3 2 chr3 138842907 138848403 -20751380 - L1Md_F2 LINE L1 -1 6581 1124 5 1644 1558 52 0 16 chr3 138848403 138848597 -20751186 - B2_Mm1a SINE B2 -1 192 2 5 1644 3735 166 30 58 chr3 138848597 138849218 -20750565 - L1Md_F2 LINE L1 -5601 1123 480 5 1644 23 0 0 0 chr3 138849285 138849308 -20750475 + AT_rich Low_complexity Low_complexity 1 23 0 5 1644 386 278 86 99 chr3 138849525 138849920 -20749863 + MLT1B LTR MaLR 1 390 0 5 1644 4895 65 2 8 chr3 138850590 138851228 -20748555 - L1Md_F2 LINE L1 0 6582 5949 5 1644 2698 123 0 0 chr3 138851228 138851652 -20748131 - L1Md_F LINE L1 -5713 806 383 5 1644 1627 124 4 8 chr3 138851652 138851919 -20747864 - L1VL1 LINE L1 -6156 266 1 5 1644 333 371 52 0 chr3 138852805 138852921 -20746862 - ID_B1 SINE B4 -22 202 81 5 1644 527 226 6 0 chr3 138852921 138853080 -20746703 + CT-rich Low_complexity Low_complexity 2 161 0 5 1644 450 291 30 7 chr3 138853085 138853220 -20746563 - B1F SINE Alu -10 139 2 5 1644 251 262 0 72 chr3 138853941 138854052 -20745731 - L1M2 LINE L1 -498 5793 5691 5 1644 433 311 82 64 chr3 138854111 138854341 -20745442 - MLT1E2 LTR MaLR -30 597 262 5 1644 235 190 29 147 chr3 138854593 138854661 -20745122 - MLT1E2 LTR MaLR -567 60 1 5 1644 927 209 63 19 chr3 138856279 138856484 -20743299 - B3 SINE B2 -2 214 1 5 1644 1911 34 0 0 chr3 138857832 138858070 -20741713 - L1_Mus2 LINE L1 -736 5902 5665 5 1644 5229 66 5 0 chr3 138858070 138858734 -20741049 + L1_Mus2 LINE L1 5899 6565 -1 5 1644 765 61 0 0 chr3 138858746 138858845 -20740938 + (GAAA)n Simple_repeat Simple_repeat 2 100 0 5 1644 614 202 78 0 chr3 138858853 138858982 -20740801 + B1_Mur1 SINE Alu 1 139 -10 5 1644 351 44 0 0 chr3 138859004 138859049 -20740734 + (CAAA)n Simple_repeat Simple_repeat 1 45 0 5 1644 407 264 100 36 chr3 138859620 138859871 -20739912 - L1MB2 LINE L1 -57 6114 5848 5 1644 261 57 0 0 chr3 138860978 138861013 -20738770 + (TG)n Simple_repeat Simple_repeat 2 36 0 5 1644 3047 144 72 2 chr3 138861122 138861207 -20738576 - RLTR20D LTR ERVK -4 564 479 5 1644 414 0 0 0 chr3 138861207 138861253 -20738530 + (CA)n Simple_repeat Simple_repeat 2 47 0 5 1644 3047 144 72 2 chr3 138861253 138861694 -20738089 - RLTR20D LTR ERVK -90 478 2 5 1644 3885 142 41 46 chr3 138861934 138862694 -20737089 - RMER6A LTR ERVK 0 756 1 5 1644 243 140 0 0 chr3 138862822 138862872 -20736911 + (CCAA)n Simple_repeat Simple_repeat 2 51 0 5 1644 219 347 150 54 chr3 138863170 138863764 -20736019 - L2 LINE L2 -387 3032 2382 5 1644 207 281 0 9 chr3 138863787 138863853 -20735930 + GA-rich Low_complexity Low_complexity 1 65 0 5 1644 468 0 0 0 chr3 138864109 138864161 -20735622 + (CAAAC)n Simple_repeat Simple_repeat 3 54 0 5 1644 220 323 104 18 chr3 138864208 138864396 -20735387 + MIRb SINE MIR 24 228 -34 5 1644 308 292 35 9 chr3 138864641 138864755 -20735028 + PB1D10 SINE Alu 1 117 0 5 1644 26 50 0 0 chr3 138864875 138864915 -20734868 + AT_rich Low_complexity Low_complexity 1 40 0 5 1644 827 211 88 21 chr3 138865053 138865247 -20734536 - B3 SINE B2 -2 214 8 5 1644 426 243 53 18 chr3 138865249 138865362 -20734421 - PB1D9 SINE Alu 0 120 4 5 1644 226 0 29 29 chr3 138866956 138866991 -20732792 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 5 1644 893 154 7 0 chr3 138867020 138867163 -20732620 - B1_Mur4 SINE Alu -6 144 1 5 1644 796 176 203 0 chr3 138867619 138867806 -20731977 + URR1B DNA MER1_type 1 225 0 5 1644 207 0 0 0 chr3 138870824 138870847 -20728936 + (CA)n Simple_repeat Simple_repeat 2 24 0 5 1644 222 231 0 0 chr3 138870851 138870890 -20728893 + L2c LINE L2 3276 3314 -73 5 1644 475 265 108 25 chr3 138870993 138871113 -20728670 + RSINE1 SINE B4 2 131 -34 5 1644 381 70 0 0 chr3 138871114 138871171 -20728612 + (CA)n Simple_repeat Simple_repeat 2 58 0 5 1644 399 89 0 0 chr3 138871318 138871374 -20728409 + (TG)n Simple_repeat Simple_repeat 1 56 0 5 1644 205 254 87 29 chr3 138872554 138872623 -20727160 + L2 LINE L2 2431 2503 -916 5 1644 533 29 0 0 chr3 138873382 138873451 -20726332 + ORR1A1 LTR MaLR 1 69 -277 5 1644 862 45 54 0 chr3 138873450 138873562 -20726221 + ORR1A1 LTR MaLR 229 346 0 5 1644 226 158 0 0 chr3 138873983 138874021 -20725762 - MIRm SINE MIR -5 271 234 5 1644 312 190 0 0 chr3 138874074 138874153 -20725630 + CT-rich Low_complexity Low_complexity 2 80 0 5 1644 582 326 53 11 chr3 138874345 138874609 -20725174 + B4A SINE B4 3 277 -15 5 1644 990 111 24 24 chr3 138874684 138874980 -20724803 + GA-rich Low_complexity Low_complexity 1 296 0 5 1644 2204 107 22 0 chr3 138875676 138875994 -20723789 + ORR1A2 LTR MaLR 3 327 0 5 1644 5846 200 36 23 chr3 138876280 138877486 -20722297 - MTC-int LTR MaLR -21 1237 16 5 1644 1540 165 171 30 chr3 138877493 138877855 -20721928 - MTC LTR MaLR -8 413 1 5 1644 23 0 0 0 chr3 138878146 138878169 -20721614 + AT_rich Low_complexity Low_complexity 1 23 0 5 1644 308 266 71 0 chr3 138878590 138878671 -20721112 - ID4 SINE ID -57 95 10 5 1644 357 82 0 0 chr3 138879232 138879281 -20720502 + (TCTA)n Simple_repeat Simple_repeat 4 52 0 5 1644 552 115 11 54 chr3 138879294 138879386 -20720397 - B1_Mur3 SINE Alu -20 129 42 5 1644 256 154 115 0 chr3 138879455 138879507 -20720276 - B1_Mus1 SINE Alu -89 59 2 5 1644 27 0 0 0 chr3 138880455 138880482 -20719301 + AT_rich Low_complexity Low_complexity 1 27 0 5 1644 1769 240 132 70 chr3 138881756 138882694 -20717089 - RMER12 LTR ERVK -192 1212 1 5 1644 287 278 76 7 chr3 138882962 138883107 -20716676 - L1MC4 LINE L1 -961 7081 6927 5 1644 1002 121 0 0 chr3 138883465 138883606 -20716177 - B1_Mus1 SINE Alu -5 143 3 5 1644 307 287 27 75 chr3 138883817 138883964 -20715819 + L1M2 LINE L1 2872 3011 -3132 5 1644 468 311 24 36 chr3 138883988 138884155 -20715628 + RSINE1 SINE B4 1 165 0 5 1644 1023 62 0 0 chr3 138884310 138884440 -20715343 + B2_Mm2 SINE B2 1 130 -65 5 1644 726 96 0 0 chr3 138884460 138884564 -20715219 + (GA)n Simple_repeat Simple_repeat 1 104 0 5 1644 398 257 101 32 chr3 138884809 138884998 -20714785 + L1M2 LINE L1 3975 4176 -1970 5 1644 544 89 12 12 chr3 138884998 138885078 -20714705 + B2_Mm2 SINE B2 96 175 -20 5 1644 192 254 31 31 chr3 138885082 138885147 -20714636 - L3 LINE CR1 -748 3741 3677 5 1644 269 261 0 0 chr3 138885190 138885259 -20714524 + RLTR19-int LTR ERVK 2330 2398 -3739 5 1644 390 313 65 65 chr3 138885271 138885486 -20714297 + RLTR12A LTR ERVK 14 228 -340 5 1644 862 160 21 0 chr3 138886011 138886155 -20713628 + B1_Mus2 SINE Alu 1 147 0 6 1644 423 216 71 10 chr3 138886171 138886269 -20713514 + L1_Rod LINE L1 5532 5635 -212 6 1644 23 33 0 0 chr3 138886300 138886330 -20713453 + AT_rich Low_complexity Low_complexity 1 30 0 6 1644 228 67 0 0 chr3 138886362 138886392 -20713391 + (CCCCCG)n Simple_repeat Simple_repeat 2 31 0 6 1644 1149 300 67 63 chr3 138886450 138886564 -20713219 - Lx9 LINE L1 -171 7473 7342 6 1644 443 18 18 0 chr3 138886564 138886620 -20713163 + (TC)n Simple_repeat Simple_repeat 2 58 0 6 1644 1149 300 67 63 chr3 138886620 138887174 -20712609 - Lx9 LINE L1 -303 7341 6802 6 1644 439 331 55 7 chr3 138887447 138887593 -20712190 - RMER13A LTR ERVK -11 849 697 6 1644 540 287 8 8 chr3 138888809 138888932 -20710851 - B1_Mur1 SINE Alu -9 140 18 6 1644 236 248 265 0 chr3 138889180 138889297 -20710486 + Tigger7 DNA MER2_type 169 316 -2175 6 1644 495 84 168 0 chr3 138889764 138889859 -20709924 - Lx2 LINE L1 0 6997 6887 6 1644 237 386 16 25 chr3 138890183 138890305 -20709478 - LTR88c LTR Genie? -105 757 637 6 1644 645 277 0 0 chr3 138890437 138890578 -20709205 - B1_Mur1 SINE Alu -5 144 4 6 1644 1529 295 68 39 chr3 138890815 138891627 -20708156 - Lx9 LINE L1 -227 7417 6583 6 1644 1286 249 40 93 chr3 138891860 138892258 -20707525 - RMER15 LTR ERVL -168 407 31 6 1644 306 308 0 28 chr3 138892297 138892404 -20707379 - RMER15 LTR ERVL -471 104 1 6 1644 853 194 88 31 chr3 138892925 138893117 -20706666 + B3 SINE B2 1 203 -13 6 1644 878 216 50 0 chr3 138893698 138893879 -20705904 - B3 SINE B2 -22 194 5 6 1644 3151 137 6 26 chr3 138894122 138894654 -20705129 + RLTR28 LTR ERVL 1 521 -3 6 1644 463 280 63 8 chr3 138895293 138895419 -20704364 + B1F1 SINE Alu 1 133 -16 6 1644 192 371 44 59 chr3 138895550 138895670 -20704113 - MIRb SINE MIR -141 127 3 6 1644 26002 91 39 29 chr3 138896011 138897670 -20702113 - Lx3_Mus LINE L1 -5 7004 5368 6 1644 1171 41 7 7 chr3 138897670 138897817 -20701966 - B1_Mm SINE Alu 0 147 1 6 1644 26002 107 57 19 chr3 138897817 138897906 -20701877 - Lx3_Mus LINE L1 -519 5367 5284 6 1644 198 0 0 0 chr3 138897906 138897928 -20701855 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 6 1644 26002 109 59 17 chr3 138897928 138902556 -20697227 - Lx3_Mus LINE L1 -603 5283 374 6 1644 4021 89 3 0 chr3 138902554 138903138 -20696645 - L1_Mur1 LINE L1 -2901 2985 2400 6 1644 23 0 0 0 chr3 138903932 138903955 -20695828 + AT_rich Low_complexity Low_complexity 1 23 0 6 1644 204 353 12 0 chr3 138905219 138905304 -20694479 - MIRb SINE MIR -99 169 84 6 1644 404 302 30 48 chr3 138905676 138905843 -20693940 - RSINE1 SINE B4 0 165 2 6 1644 276 279 7 26 chr3 138906396 138906547 -20693236 + (TAA)n Simple_repeat Simple_repeat 2 149 0 6 1644 841 312 96 47 chr3 138908189 138908639 -20691144 - Lx8 LINE L1 0 7473 7002 6 1644 2532 52 64 9 chr3 138908655 138908983 -20690800 - ORR1A1 LTR MaLR 0 346 1 6 1644 409 241 0 0 chr3 138909006 138909085 -20690698 + B4A SINE B4 5 83 -209 6 1644 275 250 22 11 chr3 138909433 138909522 -20690261 - Lx7 LINE L1 -890 6806 6717 6 1644 304 298 0 0 chr3 138909584 138909668 -20690115 - Lx8 LINE L1 -860 6613 6530 6 1644 1467 88 80 53 chr3 138909700 138909963 -20689820 + L1_Mus3 LINE L1 6369 6638 0 6 1644 4844 107 42 8 chr3 138909990 138911095 -20688688 - Lx3A LINE L1 -704 6277 5106 6 1644 3742 74 16 10 chr3 138911095 138911602 -20688181 - L1_Mus4 LINE L1 -6 6630 6121 6 1644 965 101 69 0 chr3 138911605 138911764 -20688019 + L1_Mur2 LINE L1 5268 5437 -440 6 1644 31727 70 16 1 chr3 138912058 138918142 -20681641 - L1Md_F2 LINE L1 -14 6568 392 6 1644 871 250 9 14 chr3 138918284 138918499 -20681284 + B3 SINE B2 3 216 0 6 1644 264 30 0 0 chr3 138919058 138919091 -20680692 + (TCTG)n Simple_repeat Simple_repeat 4 36 0 6 1644 306 0 0 0 chr3 138920771 138920805 -20678978 + (T)n Simple_repeat Simple_repeat 1 34 0 6 1644 735 67 9 0 chr3 138920805 138920910 -20678873 - B1_Mus2 SINE Alu 0 147 42 6 1644 1432 133 40 0 chr3 138920903 138921128 -20678655 - RMER6C LTR ERVK -456 234 1 6 1644 3561 216 78 16 chr3 138921239 138921390 -20678393 - Lx7 LINE L1 -184 7512 7362 6 1644 543 92 0 0 chr3 138921390 138921477 -20678306 + (CCAA)n Simple_repeat Simple_repeat 2 88 0 6 1644 3561 216 78 16 chr3 138921477 138922199 -20677584 - Lx7 LINE L1 -335 7361 6586 6 1644 287 347 0 0 chr3 138922200 138922272 -20677511 - B4A SINE B4 -76 216 145 6 1644 258 279 52 43 chr3 138922309 138922398 -20677385 - LTRIS3 LTR ERV1 -66 446 357 6 1644 1083 188 129 58 chr3 138922398 138922708 -20677075 - IAPEY3_LTR LTR ERVK 0 332 1 6 1644 1243 198 55 15 chr3 138922708 138923051 -20676732 - IAP-d-int LTR ERVK 0 6481 6125 6 1644 1421 127 97 27 chr3 138923068 138923385 -20676398 - IAPEY3-int LTR ERVK -342 7338 6965 6 1644 1260 135 108 0 chr3 138923388 138923610 -20676173 - IAP-d-int LTR ERVK -1290 5252 5007 6 1644 317 175 0 0 chr3 138923610 138923667 -20676116 - IAP-d-int LTR ERVK -6039 503 447 6 1644 583 239 193 9 chr3 138923895 138924123 -20675660 - RMER16-int LTR ERVK -5474 663 394 6 1644 666 201 104 0 chr3 138924099 138924253 -20675530 - RMER16-int LTR ERVK -4903 503 334 6 1644 749 141 7 7 chr3 138924250 138924386 -20675397 - MMERVK10C-int LTR ERVK -6738 843 708 6 1644 2713 112 7 7 chr3 138924489 138924911 -20674872 - MMERVK10C-int LTR ERVK -7159 422 1 6 1644 1048 188 126 55 chr3 138924911 138925221 -20674562 - IAPEY3_LTR LTR ERVK 0 332 1 6 1644 475 273 48 41 chr3 138925712 138925857 -20673926 - B4 SINE B4 -146 146 1 6 1644 917 158 7 14 chr3 138925955 138926103 -20673680 + B1_Mus2 SINE Alu 1 147 0 6 1644 537 58 0 0 chr3 138926110 138926179 -20673604 + (TC)n Simple_repeat Simple_repeat 2 70 0 6 1644 2065 260 93 37 chr3 138926180 138927039 -20672744 - Lx9 LINE L1 -41 7603 6697 6 1644 22 35 0 0 chr3 138927364 138927393 -20672390 + AT_rich Low_complexity Low_complexity 1 29 0 6 1644 23 33 0 0 chr3 138928890 138928920 -20670863 + AT_rich Low_complexity Low_complexity 1 30 0 6 1644 32125 73 6 5 chr3 138929237 138935422 -20664361 - L1Md_F2 LINE L1 -15 6567 374 6 1644 186 375 101 23 chr3 138935445 138935702 -20664081 + L2 LINE L2 2802 3078 -341 6 205 274 361 102 29 chr3 138936226 138936363 -20663420 + MER45A DNA Tip100 1 147 -31 6 1645 288 0 0 0 chr3 138936437 138936469 -20663314 + (TC)n Simple_repeat Simple_repeat 1 32 0 6 1645 485 215 11 0 chr3 138936470 138936563 -20663220 - B1_Mur3 SINE Alu -12 137 44 6 1645 284 0 0 160 chr3 138936610 138936754 -20663029 + (CTCTG)n Simple_repeat Simple_repeat 5 125 0 6 1645 313 224 0 33 chr3 138936755 138936815 -20662968 - B1_Mus2 SINE Alu -88 59 2 6 1645 381 250 88 49 chr3 138936966 138937227 -20662556 - L1MA8 LINE L1 -355 5936 5630 6 1645 1120 293 88 10 chr3 138937331 138937842 -20661941 - Lx6 LINE L1 -1 7459 6530 6 1645 409 302 43 29 chr3 138937877 138938153 -20661630 - L1MA8 LINE L1 -786 5357 5078 6 1645 473 208 0 40 chr3 138938325 138938425 -20661358 - B3A SINE B2 -96 102 7 6 1645 504 290 78 102 chr3 138938428 138938657 -20661126 - L1MC5 LINE L1 -722 7239 6990 6 1645 1132 82 0 0 chr3 138938657 138938803 -20660980 - B1_Mm SINE Alu 0 147 2 6 1645 504 290 78 102 chr3 138938803 138938984 -20660799 - L1MC5 LINE L1 -972 6989 6839 6 1645 706 279 41 52 chr3 138939053 138939344 -20660439 - B4 SINE B4 0 292 5 6 1645 1243 154 5 28 chr3 138939842 138940056 -20659727 - ORR1C1 LTR MaLR 0 378 170 6 1645 734 121 66 0 chr3 138940057 138940223 -20659560 + G-rich Low_complexity Low_complexity 3 179 0 6 1645 399 191 21 73 chr3 138940250 138940346 -20659437 - ORR1C1 LTR MaLR -191 187 97 6 1645 5359 176 182 9 chr3 138940345 138940924 -20658859 - ORR1C1-int LTR MaLR -98 1411 747 6 1645 3436 28 2 0 chr3 138940924 138941319 -20658464 + MTA_Mm LTR MaLR 1 396 0 6 1645 9257 23 12 1 chr3 138941319 138942405 -20657378 + MTA_Mm-int LTR MaLR 1 1098 0 6 1645 3462 25 2 0 chr3 138942405 138942800 -20656983 + MTA_Mm LTR MaLR 1 396 0 6 1645 5359 176 182 9 chr3 138942800 138943421 -20656362 - ORR1C1-int LTR MaLR -763 746 3 6 1645 993 206 18 67 chr3 138943421 138943645 -20656138 - ORR1C1 LTR MaLR 0 378 166 6 1645 375 23 0 0 chr3 138943645 138943689 -20656094 + (GA)n Simple_repeat Simple_repeat 1 44 0 6 1645 486 266 15 15 chr3 138943695 138943825 -20655958 - ORR1C1 LTR MaLR -188 190 61 6 1645 1752 223 113 28 chr3 138943890 138944420 -20655363 - RMER1C Other Other -1 1341 767 6 1645 303 226 63 45 chr3 138944586 138944697 -20655086 - RMER1B Other Other -913 153 41 6 1645 470 310 65 58 chr3 138945130 138945464 -20654319 + L1MA9 LINE L1 584 1165 -5488 6 1645 648 0 0 0 chr3 138945499 138945571 -20654212 + (TTTC)n Simple_repeat Simple_repeat 2 73 0 6 1645 1732 150 0 89 chr3 138945603 138945940 -20653843 - Lx LINE L1 -4 6650 6344 6 1645 274 353 47 74 chr3 138946180 138946437 -20653346 + L1MA9 LINE L1 715 964 -5689 6 1645 312 291 80 22 chr3 138946546 138946683 -20653100 + L1MA9 LINE L1 3946 4090 -2639 6 1645 211 176 0 0 chr3 138946688 138946722 -20653061 + B3 SINE B2 1 34 -182 6 1645 747 253 21 73 chr3 138946725 138946917 -20652866 + B3A SINE B2 7 188 -10 6 1645 654 255 198 42 chr3 138946946 138947561 -20652222 + L1MA9 LINE L1 4094 4804 -1922 6 1645 567 307 59 7 chr3 138947559 138947907 -20651876 + L1MA9 LINE L1 5987 6350 -548 6 1645 1075 122 5 9 chr3 138948104 138948319 -20651464 + (TTTC)n Simple_repeat Simple_repeat 1 213 0 6 1645 1082 104 0 0 chr3 138948321 138948465 -20651318 - B1_Mus1 SINE Alu -1 147 4 6 1645 424 243 62 23 chr3 138948490 138948532 -20651251 + L1MA9 LINE L1 6673 6712 -186 6 1645 532 131 0 10 chr3 138948532 138948632 -20651151 + Lx LINE L1 6552 6650 -4 6 1645 424 243 62 23 chr3 138948632 138948766 -20651017 + L1MA9 LINE L1 6713 6856 -42 6 1645 336 48 0 0 chr3 138948842 138948884 -20650899 + (TG)n Simple_repeat Simple_repeat 1 42 0 6 1645 1559 322 91 33 chr3 138949124 138949221 -20650562 + Charlie25 DNA MER1_type 1524 1625 -899 6 1645 517 235 88 0 chr3 138949221 138949357 -20650426 + B1F1 SINE Alu 2 149 0 6 1645 1559 322 91 33 chr3 138949357 138950204 -20649579 + Charlie25 DNA MER1_type 1626 2523 -1 6 1645 281 344 93 74 chr3 138950257 138950527 -20649256 - MLT1A0 LTR MaLR -2 363 89 6 1645 293 373 136 33 chr3 138951280 138951552 -20648231 + MER102b DNA MER1_type 14 313 -28 6 1645 264 374 59 8 chr3 138952718 138952955 -20646828 + L2 LINE L2 2260 2508 -911 6 1645 32245 74 9 1 chr3 138953097 138959316 -20640467 - L1Md_F2 LINE L1 -2 6580 311 6 1645 183 80 0 0 chr3 138959583 138959608 -20640175 + (TAA)n Simple_repeat Simple_repeat 2 26 0 6 1645 357 261 139 0 chr3 138959623 138959738 -20640045 - B1F2 SINE Alu -8 141 11 6 1645 322 247 86 118 chr3 138960143 138960363 -20639420 - RMER1C Other Other -18 1324 1112 6 1645 1095 193 133 23 chr3 138960402 138960710 -20639073 + ORR1B1-int LTR MaLR 972 1575 -217 6 1645 703 59 20 0 chr3 138961116 138961217 -20638566 + (TC)n Simple_repeat Simple_repeat 2 104 0 6 1645 189 0 0 0 chr3 138961338 138961359 -20638424 + (TTTC)n Simple_repeat Simple_repeat 4 24 0 6 1645 30 45 0 0 chr3 138962188 138962232 -20637551 + AT_rich Low_complexity Low_complexity 1 44 0 6 1645 182 333 31 16 chr3 138962841 138962905 -20636878 + MER5B DNA MER1_type 4 68 -110 6 1645 229 360 27 0 chr3 138963111 138963186 -20636597 + MER63D DNA AcHobo 5 81 -980 6 1645 10699 165 37 28 chr3 138963329 138965623 -20634160 + Lx5 LINE L1 1592 3906 -1971 6 1645 2944 81 27 2 chr3 138965623 138966034 -20633749 + BGLII LTR ERVK 1 421 0 6 1645 6027 166 59 43 chr3 138966035 138968346 -20631437 + Lx5 LINE L1 4608 6962 -88 6 1645 180 0 0 0 chr3 138968346 138968366 -20631417 + (GGAGAA)n Simple_repeat Simple_repeat 5 24 0 6 1645 6027 168 94 46 chr3 138968366 138968444 -20631339 + Lx5 LINE L1 6963 7048 -2 6 1645 275 280 110 0 chr3 138968560 138968660 -20631123 + B1_Mur2 SINE Alu 32 142 -7 6 1645 620 238 33 13 chr3 138968571 138968724 -20631059 + B4A SINE B4 129 284 -8 7 1645 450 0 0 0 chr3 138968731 138968781 -20631002 + (CA)n Simple_repeat Simple_repeat 2 51 0 7 1645 1293 244 62 27 chr3 138970030 138970435 -20629348 + MTD LTR MaLR 1 419 0 7 1645 2174 292 117 46 chr3 138970437 138971346 -20628437 + MTD-int LTR MaLR 2 974 -284 7 1645 219 250 32 11 chr3 138972721 138972814 -20626969 + (TATAA)n Simple_repeat Simple_repeat 5 99 0 7 1645 393 22 0 0 chr3 138972881 138972927 -20626856 + (TG)n Simple_repeat Simple_repeat 2 47 0 7 1645 344 355 21 0 chr3 138972928 138973069 -20626714 - RSINE1 SINE B4 -18 147 4 7 1645 215 376 32 0 chr3 138973253 138973346 -20626437 + MER5B DNA MER1_type 2 97 -81 6 1645 290 392 80 15 chr3 138973629 138973953 -20625830 + LTR40b LTR ERVL 70 414 -48 7 1645 288 281 132 21 chr3 138974621 138974864 -20624919 - L1MEg LINE L1 -4537 1547 1278 7 1645 419 338 48 35 chr3 138974921 138975151 -20624632 - L1MEg LINE L1 -4899 1185 953 7 1645 274 304 28 21 chr3 138975236 138975377 -20624406 - Lx7 LINE L1 0 7696 7555 7 1645 384 40 0 0 chr3 138975426 138975476 -20624307 + (CA)n Simple_repeat Simple_repeat 2 51 0 7 1645 2022 296 122 9 chr3 138975716 138976710 -20623073 - Lx9 LINE L1 -179 7465 6360 7 1645 422 294 52 62 chr3 138976710 138977018 -20622765 - L1M2 LINE L1 -520 5780 5476 7 1645 1782 32 0 0 chr3 138977106 138977322 -20622461 + L1Md_F2 LINE L1 5371 5586 -297 7 1645 7915 54 2 4 chr3 138977322 138978319 -20621464 + L1Md_F2 LINE L1 5587 6581 -1 7 1645 223 178 65 22 chr3 138978321 138978367 -20621416 - B3A SINE B2 -124 74 27 7 1645 482 120 11 11 chr3 138978387 138978480 -20621303 - Lx2A LINE L1 -9 6999 6907 7 1645 670 165 25 12 chr3 138978457 138978617 -20621166 - Lx2A LINE L1 -32 6976 6815 7 1645 180 111 0 0 chr3 138978839 138978866 -20620917 + (TTC)n Simple_repeat Simple_repeat 1 27 0 7 1645 207 0 0 0 chr3 138978997 138979020 -20620763 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 7 1645 1138 222 194 32 chr3 138979667 138980084 -20619699 - Lx9 LINE L1 -2 7642 7158 7 1645 350 265 317 24 chr3 138981001 138981283 -20618500 + MLT1A0 LTR MaLR 1 365 0 7 1645 206 233 0 0 chr3 138981847 138981890 -20617893 + (CATATA)n Simple_repeat Simple_repeat 5 47 0 7 1645 1000 191 32 0 chr3 138982021 138982210 -20617573 - URR1A DNA MER1_type 0 226 32 7 1645 3454 32 0 2 chr3 138982418 138982830 -20616953 - L1Md_F3 LINE L1 0 6584 6174 7 1645 496 68 30 0 chr3 138982830 138982912 -20616871 + L1Md_F3 LINE L1 5914 5993 -661 7 1645 182 289 39 0 chr3 138982923 138982975 -20616808 - L2 LINE L2 -345 3074 3021 7 1645 629 164 136 5 chr3 138983102 138983286 -20616497 - Lx9 LINE L1 -2 7642 7435 7 1645 332 70 0 0 chr3 138983292 138983335 -20616448 + (TTCC)n Simple_repeat Simple_repeat 2 44 0 7 1645 630 122 0 0 chr3 138983335 138983433 -20616350 + (TC)n Simple_repeat Simple_repeat 2 99 0 7 1645 419 240 95 9 chr3 138983443 138983548 -20616235 - RSINE1 SINE B4 -2 163 50 7 1645 221 159 0 0 chr3 138983832 138983876 -20615907 + (CA)n Simple_repeat Simple_repeat 1 44 0 7 1645 552 273 35 21 chr3 138986301 138986443 -20613340 - RSINE1 SINE B4 -2 163 20 7 1645 1543 155 83 0 chr3 138986494 138986772 -20613011 + MTC-int LTR MaLR 485 785 -473 7 1645 30 27 0 0 chr3 138986776 138986813 -20612970 + AT_rich Low_complexity Low_complexity 1 37 0 7 1645 2251 150 86 15 chr3 138986813 138987267 -20612516 - Lx4A LINE L1 -2 7056 6571 7 1645 699 175 34 62 chr3 138987269 138987446 -20612337 + MTC-int LTR MaLR 1083 1254 -4 7 1645 648 132 79 0 chr3 138987452 138987566 -20612217 + MTC LTR MaLR 3 125 -296 7 1645 348 191 0 0 chr3 138987563 138987626 -20612157 + MTD LTR MaLR 356 418 -1 7 1645 23 33 0 0 chr3 138988398 138988428 -20611355 + AT_rich Low_complexity Low_complexity 1 30 0 7 1645 7375 142 12 7 chr3 138988452 138989932 -20609851 - Lx5 LINE L1 -1021 6029 4536 7 1645 1580 147 99 3 chr3 138989936 138990278 -20609505 - Lx5 LINE L1 -2871 3006 2632 7 1645 2133 160 19 34 chr3 138990262 138991058 -20608725 - Lx5 LINE L1 -4193 1684 893 7 1645 337 279 208 22 chr3 138992474 138992657 -20607126 - LTR50 LTR ERVL -114 681 465 7 1645 381 43 0 0 chr3 138992826 138992873 -20606910 + (TATG)n Simple_repeat Simple_repeat 2 48 0 7 1645 5773 93 17 1 chr3 138994677 138995487 -20604296 - Lx2 LINE L1 0 6997 6175 7 1645 286 233 0 0 chr3 138995491 138995551 -20604232 - MLT1A1 LTR MaLR -42 366 307 7 1645 9471 64 3 0 chr3 138995553 138996817 -20602966 - L1Md_F2 LINE L1 -91 5792 4525 7 1645 6240 54 4 3 chr3 138996817 138997600 -20602183 + L1Md_F2 LINE L1 5798 6581 -1 7 1645 2963 193 63 52 chr3 138997655 138998405 -20601378 - Lx5 LINE L1 -4 7046 6289 7 1645 420 263 26 38 chr3 138998583 138998765 -20601018 - L1M2 LINE L1 -776 5557 5377 7 1645 198 0 0 0 chr3 138998889 138998911 -20600872 + (TTTG)n Simple_repeat Simple_repeat 3 24 0 7 1645 1209 54 0 0 chr3 138998911 138999051 -20600732 - B1_Mus1 SINE Alu -6 142 3 7 1645 180 77 0 0 chr3 138999439 138999465 -20600318 + (TCCC)n Simple_repeat Simple_repeat 4 29 0 7 1645 661 182 114 0 chr3 138999472 138999604 -20600179 - B1_Mur3 SINE Alu 0 149 3 7 1645 495 0 0 0 chr3 138999695 138999750 -20600033 + (TG)n Simple_repeat Simple_repeat 2 56 0 7 1645 456 298 57 8 chr3 138999753 138999875 -20599908 - RSINE1 SINE B4 -34 131 4 7 1645 234 0 0 0 chr3 138999890 138999916 -20599867 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 7 1645 383 291 75 18 chr3 139000003 139000230 -20599553 - L1M4c LINE L1 -3964 2886 2647 1 1645 254 216 0 0 chr3 139000682 139000733 -20599050 - L1M4c LINE L1 -4403 2446 2396 1 1645 188 24 47 47 chr3 139001045 139001088 -20598695 + (CCA)n Simple_repeat Simple_repeat 3 45 0 2 1645 418 254 17 56 chr3 139002533 139002727 -20597056 - B1_Mur3 SINE Alu -2 147 1 3 1645 225 254 18 0 chr3 139003818 139003873 -20595910 + RMER15 LTR ERVL 505 560 -15 4 1645 668 314 128 4 chr3 139003974 139004201 -20595582 + B4A SINE B4 12 266 -26 5 1645 1251 216 113 25 chr3 139004620 139004810 -20594973 - ORR1C2 LTR MaLR -28 356 167 6 1645 1026 85 18 0 chr3 139004810 139004974 -20594809 + (GA)n Simple_repeat Simple_repeat 1 167 0 7 1645 1251 216 113 25 chr3 139004974 139005110 -20594673 - ORR1C2 LTR MaLR -218 166 1 6 1645 3719 301 48 44 chr3 139005595 139006885 -20592898 - Lx7 LINE L1 -481 7215 5880 8 1645 793 193 7 15 chr3 139006885 139007022 -20592761 + B1_Mur3 SINE Alu 1 136 -13 9 1645 8013 242 34 28 chr3 139007022 139009679 -20590104 - Lx7 LINE L1 -1817 5879 3241 8 1645 22522 86 12 8 chr3 139009814 139011782 -20588001 - L1_Mus1 LINE L1 -2 6565 4615 1 1645 1265 27 0 0 chr3 139011782 139011929 -20587854 - B1_Mm SINE Alu 0 147 1 1 1645 22522 110 9 15 chr3 139011929 139014277 -20585506 - L1_Mus1 LINE L1 -1269 4614 2264 1 1645 3549 145 89 12 chr3 139014281 139015298 -20584485 - L1_Mus1 LINE L1 -4402 1481 387 1 1645 200 318 63 36 chr3 139015565 139015676 -20584107 - MIRc SINE MIR -118 150 37 1 1645 558 269 13 147 chr3 139015733 139015964 -20583819 + MTEa LTR MaLR 27 226 -153 1 1645 217 100 20 20 chr3 139016019 139016070 -20583713 + (CAAAAA)n Simple_repeat Simple_repeat 4 54 0 1 1645 23 33 0 0 chr3 139016213 139016243 -20583540 + AT_rich Low_complexity Low_complexity 1 30 0 1 1645 183 42 0 0 chr3 139016300 139016324 -20583459 + (CAA)n Simple_repeat Simple_repeat 2 25 0 1 1645 252 0 0 0 chr3 139016905 139016933 -20582850 + (TTAA)n Simple_repeat Simple_repeat 3 30 0 1 1645 1010 99 0 7 chr3 139017186 139017329 -20582454 - B2_Mm2 SINE B2 -39 156 15 1 1645 3404 104 8 0 chr3 139017349 139017821 -20581962 + Lx LINE L1 6173 6648 -6 1 1645 3032 153 98 11 chr3 139018037 139018352 -20581431 - RMER6C LTR ERVK 0 690 327 2 1645 180 0 0 0 chr3 139018352 139018372 -20581411 + (CTG)n Simple_repeat Simple_repeat 2 21 0 2 1645 3032 153 98 11 chr3 139018372 139018689 -20581094 - RMER6C LTR ERVK -364 326 3 2 1645 1629 144 37 134 chr3 139018694 139019103 -20580680 - RLTR31_Mm LTR ERVK -192 369 1 2 1645 226 268 0 18 chr3 139019467 139019524 -20580259 - Lx8 LINE L1 -463 7010 6955 2 1645 897 88 0 16 chr3 139019882 139020009 -20579774 + B2_Mm2 SINE B2 1 125 -70 2 1645 306 0 0 0 chr3 139020040 139020074 -20579709 + (TGAA)n Simple_repeat Simple_repeat 3 36 0 2 1645 477 0 0 0 chr3 139020078 139020131 -20579652 + (GA)n Simple_repeat Simple_repeat 2 54 0 2 1645 242 297 113 48 chr3 139021858 139021982 -20577801 - B1F1 SINE Alu -5 144 13 2 1645 351 281 144 0 chr3 139022430 139022569 -20577214 - RSINE1 SINE B4 -4 161 3 2 1645 373 296 130 0 chr3 139022592 139022754 -20577029 + Lx8 LINE L1 7041 7223 -250 2 1645 1183 266 82 112 chr3 139022836 139023436 -20576347 - RMER13A LTR ERVK -278 582 1 3 1645 2770 164 39 0 chr3 139023632 139024121 -20575662 - L1_Mur1 LINE L1 -3 5883 5376 3 1645 21 0 0 0 chr3 139024260 139024281 -20575502 + AT_rich Low_complexity Low_complexity 1 21 0 3 1645 29 0 0 0 chr3 139024436 139024465 -20575318 + AT_rich Low_complexity Low_complexity 1 29 0 3 1645 419 241 150 26 chr3 139024868 139024922 -20574861 - L1M2 LINE L1 -905 5238 5173 3 1645 342 0 0 0 chr3 139024922 139024960 -20574823 + (CA)n Simple_repeat Simple_repeat 2 39 0 3 1645 419 241 150 26 chr3 139024960 139025178 -20574605 - L1M2 LINE L1 -971 5172 4933 3 1645 16609 121 13 21 chr3 139025320 139028461 -20571322 + L1_Mus1 LINE L1 972 4084 -1799 3 1645 25 51 0 0 chr3 139028468 139028507 -20571276 + AT_rich Low_complexity Low_complexity 1 39 0 3 1645 8380 44 2 8 chr3 139028507 139030283 -20569500 - L1Md_F2 LINE L1 0 6582 4820 3 1645 33807 35 0 0 chr3 139030306 139035521 -20564262 + L1Md_T LINE L1 278 5589 -297 3 1645 9056 4 0 0 chr3 139035521 139036539 -20563244 + L1Md_T LINE L1 5590 6585 0 3 1645 10295 71 1 4 chr3 139036539 139037986 -20561797 - L1Md_F2 LINE L1 -1053 4830 3389 3 1645 7527 92 109 4 chr3 139037966 139039900 -20559883 + L1_Mus1 LINE L1 4072 6567 0 3 1645 7303 112 7 11 chr3 139039899 139041805 -20557978 + L1_Mus2 LINE L1 4670 6566 0 4 1645 375 245 3 23 chr3 139041831 139041951 -20557832 - L1M2 LINE L1 -1304 4839 4725 3 1645 238 291 92 92 chr3 139042217 139042249 -20557534 - B2_Mm1a SINE B2 -13 180 143 4 1645 495 0 0 0 chr3 139042249 139042304 -20557479 + (TG)n Simple_repeat Simple_repeat 1 55 0 4 1645 353 291 92 92 chr3 139042304 139042434 -20557349 - B3A SINE B2 -48 150 18 4 1645 501 17 0 0 chr3 139042580 139042638 -20557145 + (CA)n Simple_repeat Simple_repeat 1 58 0 4 1645 375 331 50 0 chr3 139042935 139043056 -20556727 - MLT1C LTR MaLR -8 459 333 4 1645 407 368 84 19 chr3 139043039 139043465 -20556318 - MLT-int LTR MaLR -1115 620 167 4 1645 254 262 128 23 chr3 139043637 139043723 -20556060 - MLT1C LTR MaLR -67 341 247 4 1645 973 95 7 13 chr3 139044013 139044163 -20555620 - L1_Mus2 LINE L1 0 6566 6418 4 1645 442 339 130 36 chr3 139044583 139045030 -20554753 - L1MCc LINE L1 -5924 499 11 4 1645 21 0 0 0 chr3 139045287 139045308 -20554475 + AT_rich Low_complexity Low_complexity 1 21 0 4 1645 180 0 0 0 chr3 139045528 139045548 -20554235 + (TC)n Simple_repeat Simple_repeat 2 21 0 4 1645 244 364 29 52 chr3 139045667 139045803 -20553980 - MTE-int LTR MaLR -1318 262 130 5 1645 334 254 85 111 chr3 139045822 139046091 -20553692 - Lx9 LINE L1 -363 7281 6884 5 1645 313 327 36 27 chr3 139046255 139046365 -20553418 + PB1D10 SINE Alu 7 117 0 5 1645 363 232 84 28 chr3 139046572 139046714 -20553069 + L1MA5A LINE L1 5677 5826 -471 5 1645 3141 176 43 14 chr3 139046956 139047580 -20552203 - RLTR26 LTR ERVK 0 642 1 5 1645 1469 114 57 34 chr3 139047662 139047926 -20551857 + Lx3C LINE L1 6704 6973 -3 5 1645 186 43 0 0 chr3 139047929 139047952 -20551831 + (TA)n Simple_repeat Simple_repeat 2 24 0 5 1645 25 0 0 0 chr3 139049077 139049102 -20550681 + AT_rich Low_complexity Low_complexity 1 25 0 5 1645 314 285 99 110 chr3 139049276 139049548 -20550235 + L1M4 LINE L1 5541 5809 -365 5 1645 357 278 81 35 chr3 139049891 139050089 -20549694 - L1M2 LINE L1 -3651 2492 2286 5 1645 234 289 48 12 chr3 139050158 139050242 -20549541 - MusHAL1 LINE L1 -1653 1059 973 6 1645 279 231 141 13 chr3 139050584 139050733 -20549050 - L1_Rod LINE L1 -4008 1839 1672 6 1645 38704 15 2 7 chr3 139050996 139057198 -20542585 - L1Md_A LINE L1 0 6582 416 6 1645 216 0 0 0 chr3 139057361 139057385 -20542398 + (TTTA)n Simple_repeat Simple_repeat 4 27 0 6 1645 8490 93 31 14 chr3 139057385 139058850 -20540933 - Lx3A LINE L1 -16 6965 5488 6 1645 226 357 0 12 chr3 139058910 139058995 -20540788 + (CATG)n Simple_repeat Simple_repeat 2 85 0 6 1645 703 319 38 68 chr3 139058996 139059289 -20540494 - B4A SINE B4 -6 286 3 6 1645 200 209 25 83 chr3 139059712 139059832 -20539951 + GA-rich Low_complexity Low_complexity 67 179 0 6 1645 5380 122 75 14 chr3 139060911 139061300 -20538483 - Lx4B LINE L1 -1096 5962 5547 6 1645 2734 202 63 34 chr3 139061300 139062016 -20537767 - RMER19A LTR ERVK 0 737 1 6 1645 5380 141 6 120 chr3 139062016 139062289 -20537494 - Lx4B LINE L1 -331 5546 5283 6 1645 484 16 0 0 chr3 139062289 139062352 -20537431 - L1Md_T LINE L1 -1 6581 6519 7 1645 970 33 0 8 chr3 139062353 139062475 -20537308 + B2_Mm1a SINE B2 2 122 -71 7 1645 5380 141 6 120 chr3 139062475 139063010 -20536773 - Lx4B LINE L1 -595 5281 4749 6 1645 5319 174 24 8 chr3 139063008 139064016 -20535767 + Lx4B LINE L1 6017 7040 -18 7 1645 2106 83 12 34 chr3 139064686 139065010 -20534773 - L1_Mus3 LINE L1 -6 6632 6316 7 1645 822 141 78 0 chr3 139065010 139065152 -20534631 + L1VL1 LINE L1 15 167 -6255 7 1645 32 0 0 0 chr3 139065158 139065190 -20534593 + AT_rich Low_complexity Low_complexity 1 32 0 7 1645 414 0 0 0 chr3 139065307 139065353 -20534430 + (CA)n Simple_repeat Simple_repeat 2 47 0 7 1645 640 311 138 36 chr3 139065412 139065691 -20534092 + MLT1E2 LTR MaLR 111 429 -198 7 1645 1811 201 127 70 chr3 139065691 139065714 -20534069 - MT2B LTR ERVL 0 601 581 7 1645 848 10 10 0 chr3 139065714 139065815 -20533968 + (TA)n Simple_repeat Simple_repeat 2 103 0 7 1645 1811 201 127 70 chr3 139065815 139066359 -20533424 - MT2B LTR ERVL -21 580 2 7 1645 640 311 138 36 chr3 139066359 139066412 -20533371 + MLT1E2 LTR MaLR 430 477 -150 7 1646 333 0 0 0 chr3 139067778 139067815 -20531968 + (TG)n Simple_repeat Simple_repeat 2 38 0 8 1646 210 354 7 20 chr3 139068029 139068176 -20531607 + (TA)n Simple_repeat Simple_repeat 2 146 0 8 1646 704 47 9 9 chr3 139068307 139068415 -20531368 - L1Md_F3 LINE L1 -3 6581 6474 8 1646 473 286 167 28 chr3 139068561 139068813 -20530970 + B4A SINE B4 2 288 -4 8 1646 31 88 0 0 chr3 139069517 139069597 -20530186 + AT_rich Low_complexity Low_complexity 1 80 0 8 1646 1439 149 18 25 chr3 139069619 139069884 -20529899 - RLTR31B_Mm LTR ERVK -189 368 108 8 1646 423 0 0 0 chr3 139069884 139069931 -20529852 + (TCTG)n Simple_repeat Simple_repeat 2 48 0 8 1646 1439 149 18 25 chr3 139069931 139069948 -20529835 - RLTR31B_Mm LTR ERVK -450 107 88 8 1646 2173 95 36 52 chr3 139069948 139070369 -20529414 - L1_Mur2 LINE L1 -2717 3160 2747 8 1646 3952 125 3 42 chr3 139070382 139071635 -20528148 - L1_Mur2 LINE L1 -4022 1855 656 8 1646 4589 160 54 10 chr3 139071635 139072499 -20527284 + RLTR13D6 LTR ERVK 1 902 0 8 1646 522 154 123 0 chr3 139072499 139072629 -20527154 - L1_Mur2 LINE L1 -6425 661 516 8 1646 305 221 392 36 chr3 139073441 139073579 -20526204 - ORR1C1 LTR MaLR -187 197 3 8 1646 1652 220 75 0 chr3 139073629 139074016 -20525767 - MTD LTR MaLR 0 419 4 9 1646 230 305 105 15 chr3 139074181 139074314 -20525469 - L1MEg2 LINE L1 -6141 311 167 9 1646 260 316 0 0 chr3 139075190 139075269 -20524514 + (CATA)n Simple_repeat Simple_repeat 1 79 0 9 1646 306 0 0 0 chr3 139076253 139076287 -20523496 + (CA)n Simple_repeat Simple_repeat 2 35 0 9 1646 505 314 36 18 chr3 139076311 139076532 -20523251 + MTE2b LTR MaLR 1 217 -202 9 1646 28230 28 0 0 chr3 139076557 139080720 -20519063 - L1Md_T LINE L1 0 6582 2420 9 1646 993 0 0 0 chr3 139080720 139080827 -20518956 - U6 snRNA snRNA 0 107 1 9 1646 443 242 41 174 chr3 139080849 139081044 -20518739 + MTE2b LTR MaLR 211 379 0 9 1646 958 229 20 5 chr3 139081780 139081982 -20517801 - B3 SINE B2 -11 205 1 9 1646 1016 95 0 0 chr3 139083100 139083237 -20516546 + B1_Mm SINE Alu 2 138 -9 9 1646 483 0 29 15 chr3 139083237 139083305 -20516478 + (CAAAC)n Simple_repeat Simple_repeat 2 70 0 9 1646 279 349 99 61 chr3 139083463 139083805 -20515978 + MTEa LTR MaLR 19 373 -6 1 1646 369 0 0 0 chr3 139083837 139083878 -20515905 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 1646 360 0 0 0 chr3 139083878 139083917 -20515866 + (GA)n Simple_repeat Simple_repeat 2 41 0 1 1646 307 313 121 13 chr3 139084127 139084276 -20515507 - HAL1-3A_ME LINE L1 -411 2447 2283 1 1646 1115 63 14 0 chr3 139084346 139084488 -20515295 + B1_Mus2 SINE Alu 4 147 0 1 1646 210 171 0 0 chr3 139084568 139084609 -20515174 + (TA)n Simple_repeat Simple_repeat 1 41 0 1 1646 681 249 69 10 chr3 139084888 139085091 -20514692 - B3 SINE B2 0 216 2 1 1646 3217 44 24 7 chr3 139085134 139085545 -20514238 - L1Md_F3 LINE L1 0 6584 6167 1 1646 26 82 0 0 chr3 139085712 139085773 -20514010 + AT_rich Low_complexity Low_complexity 1 61 0 1 1646 194 273 75 66 chr3 139086660 139086766 -20513017 - L2a LINE L2 0 3426 3320 1 1646 336 244 45 23 chr3 139087037 139087125 -20512658 + RSINE1 SINE B4 5 94 -71 1 1646 310 168 7 175 chr3 139087149 139087286 -20512497 + RSINE1 SINE B4 51 164 -1 1 1646 26 30 0 0 chr3 139087348 139087381 -20512402 + AT_rich Low_complexity Low_complexity 1 33 0 1 1646 219 324 53 13 chr3 139087526 139087601 -20512182 - B4A SINE B4 -126 166 89 1 1646 382 262 30 69 chr3 139087680 139087811 -20511972 - RSINE1 SINE B4 0 165 40 1 1646 1891 148 59 56 chr3 139087811 139088168 -20511615 + ORR1B1 LTR MaLR 37 394 0 1 1646 8982 154 48 77 chr3 139088168 139090187 -20509596 + ORR1B1-int LTR MaLR 1 1961 -2 1 1646 837 187 33 0 chr3 139090189 139090339 -20509444 + ORR1B1 LTR MaLR 41 195 -199 1 1646 1215 61 0 0 chr3 139090341 139090488 -20509295 - B1_Mus1 SINE Alu 0 148 2 1 1646 483 96 0 0 chr3 139090498 139090571 -20509212 + ORR1B1 LTR MaLR 322 394 0 1 1646 343 267 8 16 chr3 139090630 139090752 -20509031 - Lx7 LINE L1 -1684 6012 5892 1 1646 705 192 229 0 chr3 139090782 139091022 -20508761 - Lx7 LINE L1 -6434 1294 1000 1 1646 1036 264 141 9 chr3 139091037 139091477 -20508306 - Lx7 LINE L1 -6901 827 330 1 1646 734 95 0 8 chr3 139092368 139092495 -20507288 + (CCAA)n Simple_repeat Simple_repeat 2 127 0 1 1646 1753 288 79 24 chr3 139092513 139093274 -20506509 - Lx7 LINE L1 -385 7311 6509 1 1646 286 253 66 0 chr3 139093280 139093371 -20506412 + Lx7 LINE L1 5497 5593 -287 1 1646 732 165 19 25 chr3 139093412 139093574 -20506209 + Lx4A LINE L1 6898 7058 0 1 1646 2000 275 121 23 chr3 139093702 139094535 -20505248 + Lx7 LINE L1 5587 6501 -1195 1 1646 516 303 45 29 chr3 139095282 139095591 -20504192 - L1_Rod LINE L1 0 5847 5534 1 1646 1021 287 71 50 chr3 139095786 139096508 -20503275 - L1M3 LINE L1 -1194 4946 4210 1 1646 365 275 11 0 chr3 139096625 139096716 -20503067 - Lx9 LINE L1 -1004 6640 6549 1 1646 513 0 0 0 chr3 139096716 139096773 -20503010 + (TA)n Simple_repeat Simple_repeat 1 57 0 1 1646 565 294 0 8 chr3 139096999 139097126 -20502657 - B3A SINE B2 -70 128 3 1 1646 380 139 0 27 chr3 139097939 139098013 -20501770 - L1Md_F2 LINE L1 -12 6570 6499 1 1646 8069 86 4 2 chr3 139098013 139099229 -20500554 - L1Md_F LINE L1 -3180 2703 1485 1 1646 3121 57 5 0 chr3 139099233 139099639 -20500144 - L1Md_F2 LINE L1 -1 5882 5475 1 1646 4895 50 2 0 chr3 139099639 139100237 -20499546 + L1Md_F2 LINE L1 5984 6582 0 1 1646 567 43 0 0 chr3 139100616 139100686 -20499097 + (GAAA)n Simple_repeat Simple_repeat 3 72 0 1 1646 6455 81 2 10 chr3 139100686 139101846 -20497937 - L1Md_F LINE L1 -4368 1515 358 1 1646 627 214 13 0 chr3 139102353 139102507 -20497276 - L1_Mur3 LINE L1 -6779 933 778 1 1646 3117 42 37 3 chr3 139103428 139103811 -20495972 - MTA_Mm LTR MaLR 0 396 1 1 1646 772 353 68 53 chr3 139105215 139105630 -20494153 - L1ME3 LINE L1 -42 6120 5711 1 1646 393 22 0 0 chr3 139105630 139105676 -20494107 + (TG)n Simple_repeat Simple_repeat 1 46 0 1 1646 772 353 68 53 chr3 139105676 139106113 -20493670 - L1ME3 LINE L1 -452 5710 5256 1 1646 709 259 6 25 chr3 139106165 139106327 -20493456 - RSINE1 SINE B4 -2 163 5 1 1646 22 56 0 0 chr3 139106443 139106479 -20493304 + AT_rich Low_complexity Low_complexity 1 36 0 1 1646 317 278 146 47 chr3 139106634 139106887 -20492896 - B4A SINE B4 -14 278 1 1 1646 465 248 10 0 chr3 139107245 139107346 -20492437 - ID_B1 SINE B4 -8 216 115 1 1646 491 324 149 17 chr3 139107447 139107855 -20491928 - L1ME3 LINE L1 -3323 2823 2362 1 1646 387 107 0 26 chr3 139108209 139108286 -20491497 + Lx LINE L1 6580 6654 0 1 1646 24 32 0 0 chr3 139110410 139110441 -20489342 + AT_rich Low_complexity Low_complexity 1 31 0 1 1646 324 294 140 66 chr3 139110479 139110655 -20489128 + MLT1E2 LTR MaLR 11 188 -439 1 1646 708 12 0 0 chr3 139110655 139110736 -20489047 + (GA)n Simple_repeat Simple_repeat 1 81 0 1 1646 324 309 256 54 chr3 139110736 139111110 -20488673 + MLT1E2 LTR MaLR 189 650 -4 1 1646 778 256 53 5 chr3 139111197 139111405 -20488378 - MTE2b LTR MaLR -2 377 160 1 1646 632 225 7 53 chr3 139111974 139112124 -20487659 + B1_Mur2 SINE Alu 1 143 -6 1 1646 207 69 0 0 chr3 139112127 139112156 -20487627 + (CAA)n Simple_repeat Simple_repeat 2 30 0 1 1646 7101 84 9 2 chr3 139112277 139113532 -20486251 - L1Md_F2 LINE L1 0 6582 5316 1 1646 1556 234 12 80 chr3 139113922 139114335 -20485448 - RMER19C LTR ERVK 0 611 227 1 1646 1277 191 24 87 chr3 139114355 139114653 -20485130 - RMER19C LTR ERVK -332 279 1 1 1646 332 333 59 22 chr3 139114987 139115325 -20484458 + L1_Rod LINE L1 15 316 -6856 1 1646 2334 264 53 14 chr3 139115337 139116035 -20483748 + L1_Rod LINE L1 10 734 -6438 1 1646 1745 138 58 0 chr3 139116036 139116327 -20483456 + Lx2B LINE L1 6688 6995 -5 1 1646 1098 223 12 12 chr3 139116367 139116608 -20483175 - Lx9 LINE L1 -847 6797 6557 1 1646 225 154 0 0 chr3 139116614 139116653 -20483130 + T-rich Low_complexity Low_complexity 2 40 0 1 1646 1210 246 137 22 chr3 139116653 139116749 -20483034 - L1_Rod LINE L1 -2532 3614 3494 1 1646 542 0 44 0 chr3 139116749 139116817 -20482966 + (TTTTC)n Simple_repeat Simple_repeat 5 75 0 1 1646 1210 234 196 19 chr3 139116817 139117301 -20482482 - L1_Rod LINE L1 -2354 3493 2920 1 1646 1734 214 43 43 chr3 139117298 139117835 -20481948 - L1_Rod LINE L1 -3872 1975 1439 1 1646 24893 75 111 2 chr3 139117848 139121503 -20478280 + L1Md_F2 LINE L1 1534 5585 -298 1 1646 8118 40 8 0 chr3 139121504 139122492 -20477291 + L1Md_F2 LINE L1 5587 6582 0 1 1646 26 0 0 0 chr3 139123133 139123159 -20476624 + AT_rich Low_complexity Low_complexity 1 26 0 1 1646 232 179 60 0 chr3 139124263 139124330 -20475453 + (TATATG)n Simple_repeat Simple_repeat 6 76 0 1 1646 696 24 0 0 chr3 139124683 139124765 -20475018 + (TCCC)n Simple_repeat Simple_repeat 3 84 0 1 1646 572 40 13 0 chr3 139124765 139124840 -20474943 + (TTTC)n Simple_repeat Simple_repeat 1 76 0 1 1646 1694 333 99 41 chr3 139125458 139126609 -20473174 - Lx7 LINE L1 -34 7439 6196 1 1646 522 79 0 0 chr3 139126609 139126685 -20473098 + (CA)n Simple_repeat Simple_repeat 2 77 0 1 1646 1694 333 107 40 chr3 139126685 139126698 -20473085 - Lx7 LINE L1 -1501 6195 6186 1 1646 971 122 0 11 chr3 139126698 139126880 -20472903 + (CA)n Simple_repeat Simple_repeat 1 180 0 1 1646 1694 312 81 28 chr3 139126880 139127531 -20472252 - Lx7 LINE L1 -1511 6185 5466 1 1646 280 210 9 74 chr3 139127531 139127639 -20472144 + Lx4A LINE L1 6956 7056 -2 1 1646 22 0 0 0 chr3 139127639 139127661 -20472122 + AT_rich Low_complexity Low_complexity 1 22 0 1 1646 271 213 26 13 chr3 139127714 139127790 -20471993 - L1MD2 LINE L1 -376 5983 5907 1 1646 363 121 0 0 chr3 139127954 139128012 -20471771 + (TCCA)n Simple_repeat Simple_repeat 4 61 0 1 1646 818 308 43 6 chr3 139128016 139128340 -20471443 - Lx7 LINE L1 -659 5221 4886 1 1646 248 224 55 66 chr3 139129857 139129948 -20469835 + RMER21A LTR ERV1 797 886 -61 1 1646 255 310 91 58 chr3 139130348 139130502 -20469281 + MIR SINE MIR 15 173 -89 1 1646 1330 145 13 0 chr3 139130721 139130956 -20468827 + Lx2 LINE L1 6759 6996 -1 1 1646 180 0 0 0 chr3 139131404 139131424 -20468359 + (T)n Simple_repeat Simple_repeat 1 20 0 1 1646 326 294 116 0 chr3 139131493 139131639 -20468144 - Lx9 LINE L1 -276 7368 7206 1 1646 704 245 68 44 chr3 139131647 139131895 -20467888 - Lx9 LINE L1 -333 7311 7058 1 1646 293 263 147 0 chr3 139131897 139131992 -20467791 + Lx9 LINE L1 6510 6618 -1026 1 1646 198 208 0 0 chr3 139132955 139133003 -20466780 + (TA)n Simple_repeat Simple_repeat 1 48 0 1 1646 460 283 96 43 chr3 139133004 139133285 -20466498 - Lx8 LINE L1 -8 7465 7170 1 1646 345 241 80 36 chr3 139133365 139133477 -20466306 + B1F SINE Alu 20 136 -13 1 1646 11291 142 16 7 chr3 139133651 139136665 -20463118 + Lx2 LINE L1 3948 6996 -1 1 1646 873 157 0 0 chr3 139136912 139137065 -20462718 + (TA)n Simple_repeat Simple_repeat 2 154 0 1 1646 518 264 29 0 chr3 139137143 139137283 -20462500 + LTR41B LTR ERVL 8 151 -607 1 1646 42 36 0 0 chr3 139138726 139138782 -20461001 + AT_rich Low_complexity Low_complexity 1 56 0 1 1646 395 78 0 0 chr3 139138899 139138950 -20460833 - L1Md_F LINE L1 -6305 214 164 1 1646 8554 65 1 3 chr3 139138948 139140039 -20459744 + L1_Mm LINE L1 4496 5586 -297 1 1646 8156 40 2 2 chr3 139140039 139141029 -20458754 + L1Md_F2 LINE L1 5588 6577 -5 1 1646 30972 123 24 7 chr3 139141057 139146402 -20453381 + L1_Mus1 LINE L1 185 5632 -251 1 1646 3349 33 2 0 chr3 139146402 139146797 -20452986 - MTA_Mm LTR MaLR 0 396 1 1 1646 30972 75 8 12 chr3 139146797 139147238 -20452545 + L1_Mus1 LINE L1 5632 6072 -495 1 1646 1166 120 5 20 chr3 139147238 139147433 -20452350 + L1_Mus2 LINE L1 6375 6566 0 1 1646 22 35 0 0 chr3 139148128 139148157 -20451626 + AT_rich Low_complexity Low_complexity 1 29 0 1 1646 236 361 68 4 chr3 139149163 139149334 -20450449 - MLT1B LTR MaLR 0 467 274 1 1646 3280 186 57 19 chr3 139149990 139151110 -20448673 + L1_Mur3 LINE L1 859 2012 -3868 1 1646 731 245 5 9 chr3 139151113 139151323 -20448460 + L1_Mur3 LINE L1 2799 3007 -2873 1 1646 2649 142 14 5 chr3 139151320 139151760 -20448023 - L1_Mur3 LINE L1 -1397 4480 4037 1 1646 2093 159 89 37 chr3 139151753 139152211 -20447572 + L1_Mur3 LINE L1 4591 5072 -808 1 1646 630 184 1 4 chr3 139152521 139152647 -20447136 + L1_Mur3 LINE L1 5040 5187 -690 1 1646 3216 96 29 6 chr3 139152758 139153238 -20446545 + L1_Mus4 LINE L1 6143 6633 -3 1 1646 21 0 0 0 chr3 139154189 139154210 -20445573 + AT_rich Low_complexity Low_complexity 1 21 0 1 1646 922 326 96 5 chr3 139154305 139154703 -20445080 - Lx8 LINE L1 -256 7217 6784 1 1646 2672 75 105 0 chr3 139154708 139155108 -20444675 + L1_Mus4 LINE L1 6188 6629 -7 1 1646 1537 258 33 8 chr3 139155267 139155661 -20444122 + MTD LTR MaLR 13 416 -3 1 1646 628 318 66 9 chr3 139155661 139155874 -20443909 - Lx8 LINE L1 -846 6627 6403 1 1646 1216 41 0 0 chr3 139155875 139156021 -20443762 + B1_Mm SINE Alu 2 147 0 1 1646 189 94 0 0 chr3 139156021 139156053 -20443730 + (CAAAA)n Simple_repeat Simple_repeat 4 35 0 1 1646 720 319 43 7 chr3 139156054 139156354 -20443429 - Lx8 LINE L1 -1057 6416 6106 1 1646 23 97 0 0 chr3 139157111 139157183 -20442600 + AT_rich Low_complexity Low_complexity 1 72 0 1 1646 1389 260 106 28 chr3 139157353 139157930 -20441853 + Lx7 LINE L1 5930 6551 -1145 1 1646 474 297 117 47 chr3 139157952 139158422 -20441361 + L1MB3 LINE L1 5519 6022 -161 1 1646 22 35 0 0 chr3 139159518 139159547 -20440236 + AT_rich Low_complexity Low_complexity 1 29 0 2 1646 234 0 0 0 chr3 139160008 139160034 -20439749 + (CAAA)n Simple_repeat Simple_repeat 4 29 0 2 1646 282 311 33 8 chr3 139160099 139160219 -20439564 - MER77 LTR ERVL 0 607 485 2 1646 1686 70 4 21 chr3 139160225 139160460 -20439323 - L1_Mus3 LINE L1 -715 5851 5621 2 1646 5600 77 20 1 chr3 139160460 139161225 -20438558 + L1_Mus3 LINE L1 5860 6638 0 2 1646 293 344 194 30 chr3 139162147 139162348 -20437435 + Cheshire DNA MER1_type 2 235 -2185 2 1646 601 340 60 11 chr3 139163227 139163492 -20436291 + B4A SINE B4 2 279 -13 2 1646 257 169 50 17 chr3 139165918 139165978 -20433805 - L1M2 LINE L1 -332 5857 5796 2 1646 580 298 84 43 chr3 139166044 139166532 -20433251 - L1M2 LINE L1 -519 5793 5286 2 1646 192 77 0 0 chr3 139166533 139166559 -20433224 + (TTC)n Simple_repeat Simple_repeat 2 27 0 2 1646 4652 69 2 7 chr3 139166623 139167233 -20432550 - L1Md_F2 LINE L1 -13 6569 5963 2 1646 23 33 0 0 chr3 139167927 139167957 -20431826 + AT_rich Low_complexity Low_complexity 1 30 0 2 1646 439 310 115 68 chr3 139168230 139168569 -20431214 - ORR1E LTR MaLR -4 355 1 2 1646 274 200 186 0 chr3 139169393 139169463 -20430320 + RMER5 LTR ERV1 452 534 0 2 1646 1480 279 29 11 chr3 139169485 139170066 -20429717 - L1M2 LINE L1 -445 5435 4845 2 1646 780 175 151 0 chr3 139170310 139170476 -20429307 - B3 SINE B2 0 216 26 2 1646 331 294 209 22 chr3 139170566 139170934 -20428849 + L1M5 LINE L1 4624 5060 -1086 2 1646 284 345 37 58 chr3 139173274 139173442 -20426341 - MIRb SINE MIR -75 201 47 2 1646 1086 109 0 0 chr3 139173735 139173882 -20425901 + B1_Mus1 SINE Alu 2 148 0 2 1646 183 42 0 0 chr3 139174977 139175001 -20424782 + (GGGTG)n Simple_repeat Simple_repeat 3 26 0 2 1646 1271 103 84 5 chr3 139175495 139175709 -20424074 - L1_Mus3 LINE L1 0 6638 6408 2 1646 1879 68 0 0 chr3 139175709 139175946 -20423837 + L1_Mus3 LINE L1 6135 6371 -195 2 1646 23 0 0 0 chr3 139176310 139176333 -20423450 + AT_rich Low_complexity Low_complexity 1 23 0 2 1646 217 179 35 35 chr3 139178727 139178785 -20420998 + (TATATG)n Simple_repeat Simple_repeat 5 62 0 2 1646 671 177 23 1 chr3 139178897 139179045 -20420738 - L1_Mur3 LINE L1 -4200 1680 1530 2 1646 16430 178 40 13 chr3 139180215 139181391 -20418392 + L1_Mur2 LINE L1 861 2049 -3828 2 1646 555 29 0 0 chr3 139181391 139181460 -20418323 + (TC)n Simple_repeat Simple_repeat 1 69 0 2 1646 16430 162 50 9 chr3 139181460 139183925 -20415858 + L1_Mur2 LINE L1 2050 4629 -1248 2 1646 279 71 0 0 chr3 139183942 139183984 -20415799 + (CCAA)n Simple_repeat Simple_repeat 2 43 0 2 1646 372 70 18 0 chr3 139183986 139184043 -20415740 + L1_Mur2 LINE L1 4624 4681 -1196 2 1646 4273 199 10 8 chr3 139184079 139184954 -20414829 + Lx4B LINE L1 6182 7058 0 2 1646 615 92 0 0 chr3 139185302 139185389 -20414394 + (TCCC)n Simple_repeat Simple_repeat 4 90 0 2 1646 214 269 154 0 chr3 139185407 139185459 -20414324 - B3A SINE B2 -42 156 97 2 1646 21 57 0 0 chr3 139186215 139186250 -20413533 + AT_rich Low_complexity Low_complexity 1 35 0 2 1646 225 0 0 0 chr3 139186976 139187001 -20412782 + (T)n Simple_repeat Simple_repeat 1 25 0 2 1646 603 27 0 0 chr3 139187273 139187346 -20412437 + (CA)n Simple_repeat Simple_repeat 2 74 0 2 1646 788 150 90 0 chr3 139187352 139187485 -20412298 - B1_Mur4 SINE Alu -5 145 1 2 1646 5284 112 35 0 chr3 139187515 139188316 -20411467 - Lx2 LINE L1 -2 6995 6167 2 1646 353 164 0 0 chr3 139188316 139188383 -20411400 + 4.5SRNA scRNA scRNA 13 79 -15 2 1646 237 184 0 0 chr3 139188342 139188391 -20411392 + PB1D10 SINE Alu 41 89 -28 2 1646 362 275 103 46 chr3 139188692 139188955 -20410828 - L1M2c LINE L1 -4501 2288 2011 2 1646 267 283 43 11 chr3 139188965 139189058 -20410725 - MLT1A0 LTR MaLR -238 127 32 2 1646 21 0 0 0 chr3 139189204 139189225 -20410558 + AT_rich Low_complexity Low_complexity 1 21 0 2 1646 14180 145 13 28 chr3 139189957 139192771 -20407012 + Lx2B LINE L1 3444 6222 -778 2 1646 573 128 11 0 chr3 139192760 139192854 -20406929 - Lx2 LINE L1 -129 6868 6774 2 1646 22 0 0 0 chr3 139192979 139193001 -20406782 + AT_rich Low_complexity Low_complexity 1 22 0 2 1646 752 89 0 8 chr3 139193190 139193355 -20406428 - L1Md_F2 LINE L1 0 6582 6459 2 1646 274 354 20 29 chr3 139193391 139193493 -20406290 + MIR SINE MIR 4 104 -158 2 205 38049 15 1 8 chr3 139193656 139199498 -20400285 + L1Md_A LINE L1 1 5586 -297 2 1647 8884 10 0 0 chr3 139199498 139200494 -20399289 + L1Md_A LINE L1 5587 6582 0 2 1647 21 57 0 0 chr3 139201524 139201559 -20398224 + AT_rich Low_complexity Low_complexity 1 35 0 2 1647 232 358 9 44 chr3 139201870 139201984 -20397799 - MLT1J LTR MaLR -60 452 343 2 1647 198 296 131 36 chr3 139204741 139204878 -20394905 + MIRb SINE MIR 101 250 -18 2 1647 829 142 12 12 chr3 139204904 139205068 -20394715 + (TCTA)n Simple_repeat Simple_repeat 1 164 0 2 1647 479 250 19 0 chr3 139205071 139205179 -20394604 - PB1D10 SINE Alu -7 110 1 2 1647 1921 43 0 0 chr3 139205353 139205585 -20394198 + L1Md_T LINE L1 6349 6580 -2 2 1647 248 345 71 0 chr3 139205706 139205790 -20393993 + PB1D7 SINE Alu 1 90 -30 2 1647 1778 209 48 31 chr3 139207249 139207663 -20392120 + MTC LTR MaLR 1 421 0 2 1647 1414 140 0 4 chr3 139207672 139207902 -20391881 + MusHAL1 LINE L1 1032 1260 -1452 2 1647 3051 108 30 0 chr3 139207895 139208393 -20391390 + MusHAL1 LINE L1 1651 2163 -549 2 1647 217 122 41 0 chr3 139208900 139208916 -20390867 + (TCTA)n Simple_repeat Simple_repeat 1 16 0 2 1647 272 102 0 20 chr3 139208916 139208966 -20390817 + (TATG)n Simple_repeat Simple_repeat 2 50 0 2 1647 217 122 41 0 chr3 139208966 139208998 -20390785 + (TCTA)n Simple_repeat Simple_repeat 3 36 0 2 1647 991 215 0 16 chr3 139210161 139210355 -20389428 - Lx5 LINE L1 -315 6735 6545 2 1647 2010 113 86 0 chr3 139210355 139210656 -20389127 + ORR1A2 LTR MaLR 1 327 0 2 1647 4707 173 114 31 chr3 139210656 139211768 -20388015 + ORR1A2-int LTR MaLR 1 1204 -759 2 1647 260 372 96 52 chr3 139211766 139211902 -20387881 + B3 SINE B2 40 181 -35 2 1647 24 32 0 0 chr3 139211937 139211968 -20387815 + AT_rich Low_complexity Low_complexity 1 31 0 2 1647 21 0 0 0 chr3 139212038 139212059 -20387724 + AT_rich Low_complexity Low_complexity 1 21 0 2 1647 328 330 8 0 chr3 139212161 139212279 -20387504 - MIR SINE MIR 0 262 144 2 1647 22 56 0 0 chr3 139212481 139212517 -20387266 + AT_rich Low_complexity Low_complexity 1 36 0 2 1647 2062 118 9 58 chr3 139213842 139214185 -20385598 - ORR1A3 LTR MaLR 0 326 1 2 1647 207 0 0 0 chr3 139214352 139214375 -20385408 + (T)n Simple_repeat Simple_repeat 1 23 0 2 1647 1241 274 63 11 chr3 139214753 139215103 -20384680 - MTE2b LTR MaLR -9 370 3 2 1647 273 321 42 42 chr3 139215130 139215273 -20384510 + MIRb SINE MIR 111 253 -15 2 1647 480 35 0 0 chr3 139216283 139216341 -20383442 + (TCTA)n Simple_repeat Simple_repeat 1 58 0 2 1647 2571 153 31 46 chr3 139216342 139216822 -20382961 - Lx4A LINE L1 -2 7056 6584 2 1647 405 86 0 0 chr3 139216855 139216913 -20382870 + (TCCA)n Simple_repeat Simple_repeat 3 60 0 2 1647 300 279 15 107 chr3 139217197 139217328 -20382455 + PB1D10 SINE Alu 7 126 -22 2 1647 3621 70 2 0 chr3 139217579 139218049 -20381734 - L1_Mus1 LINE L1 -2 6565 6095 2 1647 446 320 50 59 chr3 139219326 139219545 -20380238 + MTEb LTR MaLR 1 217 -162 2 1647 602 311 104 26 chr3 139220329 139220676 -20379107 + RMER20B LTR ERVK 216 589 -38 2 1647 1895 176 0 0 chr3 139220719 139221048 -20378735 - L1_Mm LINE L1 -91 5792 5464 2 1647 25 0 0 0 chr3 139222071 139222096 -20377687 + AT_rich Low_complexity Low_complexity 1 25 0 2 1647 43 35 0 0 chr3 139222154 139222211 -20377572 + AT_rich Low_complexity Low_complexity 1 57 0 2 1647 474 178 0 0 chr3 139222509 139222599 -20377184 + (CA)n Simple_repeat Simple_repeat 2 91 0 2 1647 893 276 101 15 chr3 139222609 139222937 -20376846 - Lx8 LINE L1 -148 7325 6970 2 1647 3271 44 3 0 chr3 139222984 139223368 -20376415 - IAPEY_LTR LTR ERVK 0 385 1 2 1647 20616 47 5 6 chr3 139223368 139226080 -20373703 - IAPEy-int LTR ERVK 0 7513 4804 2 1647 2490 151 10 19 chr3 139226080 139226759 -20373024 - IAPEy-int LTR ERVK -6455 1058 1 2 1647 3305 39 3 0 chr3 139226759 139227143 -20372640 - IAPEY_LTR LTR ERVK 0 385 1 2 1647 627 314 123 9 chr3 139227275 139227625 -20372158 - Lx8 LINE L1 -852 6621 6232 2 1647 33819 34 2 0 chr3 139227694 139233746 -20366037 + L1Md_T LINE L1 1 5589 -297 2 1647 9036 5 0 0 chr3 139233746 139234741 -20365042 + L1Md_T LINE L1 5590 6584 -1 2 1647 412 317 48 29 chr3 139234867 139235218 -20364565 - L1_Mur3 LINE L1 -622 5258 4901 2 1647 369 0 0 0 chr3 139235218 139235259 -20364524 + (TG)n Simple_repeat Simple_repeat 1 41 0 2 1647 254 175 0 0 chr3 139235603 139235643 -20364140 - B3 SINE B2 -92 124 85 2 1647 791 270 35 38 chr3 139235646 139235989 -20363794 + RLTR15 LTR ERVK 1 342 -17 2 1647 496 240 19 0 chr3 139235980 139236084 -20363699 - B3 SINE B2 -109 107 2 2 1647 2775 91 79 2 chr3 139236451 139236894 -20362889 - RLTR44C LTR ERVK -25 477 1 2 1647 1682 141 45 7 chr3 139237448 139237734 -20362049 - Lx3C LINE L1 -2 6974 6678 2 1647 1156 69 0 0 chr3 139238360 139238505 -20361278 - B1_Mus2 SINE Alu -2 145 1 2 1647 258 232 262 0 chr3 139239686 139239850 -20359933 - Lx9 LINE L1 -1 7643 7437 2 1647 477 0 0 0 chr3 139239851 139239904 -20359879 + (TCTA)n Simple_repeat Simple_repeat 2 54 0 2 1647 304 283 40 20 chr3 139240599 139240700 -20359083 + PB1D10 SINE Alu 5 107 -10 2 1647 259 277 31 0 chr3 139242244 139242309 -20357474 - tRNA-Ala-GCY_ tRNA tRNA -8 67 1 2 1647 644 289 134 35 chr3 139242546 139242919 -20356864 - Lx9 LINE L1 -252 7392 6983 2 1647 7455 71 5 5 chr3 139242917 139244286 -20355497 + L1_Mus1 LINE L1 5246 6654 0 2 1647 521 276 0 0 chr3 139244290 139244424 -20355359 - Lx9 LINE L1 -654 6990 6857 2 1647 26 64 0 0 chr3 139244626 139244673 -20355110 + AT_rich Low_complexity Low_complexity 1 47 0 2 1647 430 150 13 161 chr3 139245276 139245506 -20354277 + RMER17C LTR ERVK 80 275 -135 2 1647 360 176 0 0 chr3 139245506 139245574 -20354209 + (TA)n Simple_repeat Simple_repeat 2 69 0 2 1647 294 106 0 0 chr3 139245889 139245936 -20353847 + (TG)n Simple_repeat Simple_repeat 1 47 0 2 1647 859 266 64 86 chr3 139245956 139246029 -20353754 - B4A SINE B4 -18 274 226 2 1647 3631 46 0 2 chr3 139246029 139246464 -20353319 - L1_Mus1 LINE L1 0 6567 6134 2 1647 859 266 64 86 chr3 139246464 139246670 -20353113 - B4A SINE B4 -67 225 2 2 1647 25 0 0 0 chr3 139247247 139247272 -20352511 + AT_rich Low_complexity Low_complexity 1 25 0 2 1647 24 0 0 0 chr3 139248423 139248447 -20351336 + AT_rich Low_complexity Low_complexity 1 24 0 3 1647 25 51 0 0 chr3 139248881 139248920 -20350863 + AT_rich Low_complexity Low_complexity 1 39 0 3 1647 24 0 0 0 chr3 139249101 139249125 -20350658 + AT_rich Low_complexity Low_complexity 1 24 0 3 1647 1612 347 65 40 chr3 139249139 139250354 -20349429 - Lx8 LINE L1 -53 7420 6171 3 1647 549 0 0 0 chr3 139250354 139250415 -20349368 + (TCTA)n Simple_repeat Simple_repeat 4 64 0 3 1647 1612 347 65 40 chr3 139250415 139250486 -20349297 - Lx8 LINE L1 -1303 6170 6101 3 1647 14035 92 23 8 chr3 139250713 139252426 -20347357 - Lx3_Mus LINE L1 -19 6990 5265 3 1647 417 20 0 0 chr3 139252426 139252476 -20347307 + (TG)n Simple_repeat Simple_repeat 1 50 0 3 1647 14035 83 29 15 chr3 139252476 139253551 -20346232 - Lx3_Mus LINE L1 -622 5264 4143 3 1647 279 0 0 0 chr3 139253551 139253582 -20346201 + (TC)n Simple_repeat Simple_repeat 2 32 0 3 1647 14035 83 29 15 chr3 139253582 139253593 -20346190 - L1_Mur1 LINE L1 -1744 4142 4142 3 1647 1198 54 0 0 chr3 139253593 139253740 -20346043 - B1_Mus2 SINE Alu 0 147 1 3 1647 14035 83 29 15 chr3 139253740 139254185 -20345598 - Lx3_Mus LINE L1 -1744 4142 3696 3 1647 318 26 0 0 chr3 139255284 139255323 -20344460 + (CA)n Simple_repeat Simple_repeat 2 40 0 3 1647 332 263 83 10 chr3 139255323 139255419 -20344364 + B1F1 SINE Alu 41 143 -6 3 1647 429 314 33 17 chr3 139255657 139255777 -20344006 - B1F SINE Alu -17 132 11 3 1647 320 340 31 1 chr3 139256228 139256362 -20343421 + MLT2B1 LTR ERVL 403 546 -8 3 1647 22 0 0 0 chr3 139256785 139256807 -20342976 + AT_rich Low_complexity Low_complexity 1 22 0 3 1647 625 279 145 40 chr3 139257575 139257851 -20341932 + MTEb LTR MaLR 3 307 -72 3 1647 300 317 105 80 chr3 139258028 139258391 -20341392 - MLT1B LTR MaLR -18 372 1 3 1647 383 259 13 115 chr3 139258654 139258670 -20341113 + MT2B LTR ERVL 154 212 -389 3 1647 646 197 16 0 chr3 139258670 139258792 -20340991 + B1_Mur1 SINE Alu 1 124 -25 3 1647 383 259 13 115 chr3 139258792 139258811 -20340972 + MT2B LTR ERVL 213 294 -307 3 1647 22 35 0 0 chr3 139258873 139258902 -20340881 + AT_rich Low_complexity Low_complexity 1 29 0 3 1647 378 208 50 50 chr3 139258914 139259015 -20340768 + ORR1E LTR MaLR 3 103 -256 3 1647 225 267 102 55 chr3 139259049 139259176 -20340607 + ORR1E LTR MaLR 238 370 0 3 1647 330 71 57 0 chr3 139259475 139259545 -20340238 + (TTTTTG)n Simple_repeat Simple_repeat 2 75 0 3 1647 949 260 154 12 chr3 139259546 139259889 -20339894 + MTD LTR MaLR 13 404 -15 3 1647 454 380 99 59 chr3 139260049 139260386 -20339397 - LTR40a LTR ERVL -38 481 141 3 1647 1230 185 14 0 chr3 139260386 139260608 -20339175 + URR1A DNA MER1_type 1 225 -1 3 1647 454 380 99 59 chr3 139260608 139260695 -20339088 - LTR40a LTR ERVL -379 140 40 3 1647 248 318 31 94 chr3 139260905 139261096 -20338687 + MER53 DNA hAT 11 189 -4 3 1647 254 310 0 0 chr3 139262079 139262150 -20337633 - MLT1A1 LTR MaLR -37 371 301 3 1647 295 296 107 47 chr3 139262168 139262317 -20337466 - MLT1A1 LTR MaLR -170 238 81 3 1647 369 0 0 0 chr3 139262448 139262489 -20337294 + (CA)n Simple_repeat Simple_repeat 2 42 0 3 1647 618 255 35 0 chr3 139262951 139263092 -20336691 - B3 SINE B2 -70 146 1 3 1647 404 275 9 38 chr3 139263337 139263443 -20336340 + MTEa LTR MaLR 5 107 -272 3 1647 450 0 0 0 chr3 139263467 139263517 -20336266 + (TG)n Simple_repeat Simple_repeat 1 50 0 3 1647 26 64 0 0 chr3 139263689 139263736 -20336047 + AT_rich Low_complexity Low_complexity 1 47 0 3 1647 22 56 0 0 chr3 139263770 139263806 -20335977 + AT_rich Low_complexity Low_complexity 1 36 0 3 1647 420 317 47 40 chr3 139264819 139264967 -20334816 + B1F1 SINE Alu 1 149 0 3 1647 24 32 0 0 chr3 139265019 139265050 -20334733 + AT_rich Low_complexity Low_complexity 1 31 0 3 1647 390 21 0 0 chr3 139265620 139265667 -20334116 + (CA)n Simple_repeat Simple_repeat 1 47 0 3 1647 417 271 117 65 chr3 139265721 139266072 -20333711 + L1MD3 LINE L1 7523 7891 -104 3 1647 408 273 18 35 chr3 139266137 139266251 -20333532 + RSINE1 SINE B4 28 139 -26 3 1647 527 210 143 13 chr3 139266633 139266829 -20332954 - Lx7 LINE L1 -111 5766 5552 3 1647 1057 268 25 4 chr3 139266987 139267325 -20332458 - Lx9 LINE L1 -1729 5915 5534 3 1647 27 49 0 0 chr3 139268735 139268776 -20331007 + AT_rich Low_complexity Low_complexity 1 41 0 3 1647 22 0 0 0 chr3 139268831 139268853 -20330930 + AT_rich Low_complexity Low_complexity 1 22 0 3 1647 411 205 4 176 chr3 139269321 139269560 -20330223 + MurERV4-int LTR ERVK 4822 4979 -281 3 1647 2449 136 30 11 chr3 139269591 139270029 -20329754 + RMER6-int LTR ERVK 2727 3172 -5 3 1647 3415 175 52 13 chr3 139270033 139270396 -20329387 + RMER6D LTR ERVK 1 380 -340 3 1647 351 0 0 0 chr3 139270396 139270435 -20329348 + (TG)n Simple_repeat Simple_repeat 2 40 0 3 1647 3415 175 52 13 chr3 139270435 139270761 -20329022 + RMER6D LTR ERVK 381 717 -3 3 1647 2938 160 78 170 chr3 139270802 139271795 -20327988 - RLTR13D6 LTR ERVK 0 902 1 3 1647 21 0 0 0 chr3 139272336 139272357 -20327426 + AT_rich Low_complexity Low_complexity 1 21 0 3 1647 290 267 174 0 chr3 139274611 139274697 -20325086 + PB1D10 SINE Alu 6 106 -11 3 1647 950 121 50 0 chr3 139275174 139275315 -20324468 + B1_Mus1 SINE Alu 1 148 0 3 1647 964 70 0 23 chr3 139275442 139275573 -20324210 + B1_Mus1 SINE Alu 21 148 0 3 1647 180 152 0 0 chr3 139275665 139275698 -20324085 + (TCTG)n Simple_repeat Simple_repeat 3 35 0 3 1647 515 315 16 0 chr3 139275761 139275888 -20323895 - RSINE1 SINE B4 -36 129 1 3 1647 32 32 0 46 chr3 139276017 139276082 -20323701 + AT_rich Low_complexity Low_complexity 1 62 0 3 1647 4529 58 0 0 chr3 139276204 139276758 -20323025 + L1_Mus1 LINE L1 6014 6567 0 3 1647 888 197 5 5 chr3 139276913 139277097 -20322686 + Lx4B LINE L1 5877 6060 -998 3 1647 31 26 0 0 chr3 139277220 139277258 -20322525 + AT_rich Low_complexity Low_complexity 1 38 0 3 1647 921 246 179 40 chr3 139277662 139277963 -20321820 + RMER20B LTR ERVK 51 393 -234 3 1647 225 359 17 25 chr3 139278100 139278220 -20321563 - ID_B1 SINE B4 -1 223 105 3 1647 280 345 148 24 chr3 139278224 139278393 -20321390 - B3A SINE B2 -26 190 1 3 1647 489 171 12 12 chr3 139278398 139278481 -20321302 - ID SINE ID -137 87 5 3 1647 21 36 0 0 chr3 139278671 139278699 -20321084 + AT_rich Low_complexity Low_complexity 1 28 0 3 1647 765 89 16 8 chr3 139279506 139279631 -20320152 + (TTCTC)n Simple_repeat Simple_repeat 4 129 0 3 1647 387 0 0 0 chr3 139279639 139279682 -20320101 + (TTTA)n Simple_repeat Simple_repeat 4 46 0 3 1647 5591 110 4 17 chr3 139279683 139280524 -20319259 - Lx3A LINE L1 -13 6968 6139 3 1647 201 74 0 0 chr3 139281138 139281165 -20318618 + (TA)n Simple_repeat Simple_repeat 2 28 0 3 1647 450 293 48 9 chr3 139281692 139281919 -20317864 + Lx7 LINE L1 1045 1280 -6448 3 1647 1738 267 328 3 chr3 139281921 139282331 -20317452 - Lx6 LINE L1 -106 7354 6744 3 1647 288 70 0 0 chr3 139282331 139282374 -20317409 + (TTAG)n Simple_repeat Simple_repeat 2 44 0 3 1647 1738 267 328 3 chr3 139282374 139282636 -20317147 - Lx6 LINE L1 -717 6743 6464 3 1647 781 268 68 61 chr3 139282628 139282938 -20316845 + Lx7 LINE L1 4983 5294 -586 3 1647 439 260 9 48 chr3 139282941 139283046 -20316737 + B1_Mur2 SINE Alu 32 132 -17 3 1647 459 0 0 0 chr3 139283049 139283100 -20316683 + (CAAAA)n Simple_repeat Simple_repeat 2 52 0 3 1647 388 53 0 0 chr3 139283186 139283243 -20316540 - L1_Mus3 LINE L1 -6 6632 6576 3 1647 442 270 29 14 chr3 139283337 139283476 -20316307 + LTR37A LTR ERV1 198 338 -88 3 1647 714 206 23 0 chr3 139283499 139283630 -20316153 + B1_Mus1 SINE Alu 1 134 -14 3 1647 752 167 7 0 chr3 139283635 139283779 -20316004 + GA-rich Low_complexity Low_complexity 4 148 0 3 1647 4743 250 56 35 chr3 139283783 139285739 -20314044 + Lx7 LINE L1 5355 7361 -335 3 1647 219 95 23 23 chr3 139285760 139285803 -20313980 + (TTTTG)n Simple_repeat Simple_repeat 3 45 0 3 1647 2515 65 9 0 chr3 139286575 139286899 -20312884 + ORR1A2 LTR MaLR 1 327 0 3 1647 34 42 0 0 chr3 139287306 139287354 -20312429 + AT_rich Low_complexity Low_complexity 1 48 0 3 1647 417 276 99 33 chr3 139287559 139287716 -20312067 - Lx9 LINE L1 -5 7639 7471 3 1647 324 0 0 0 chr3 139287716 139287752 -20312031 + (TC)n Simple_repeat Simple_repeat 1 36 0 3 1647 297 0 0 0 chr3 139287752 139287784 -20311999 + (CA)n Simple_repeat Simple_repeat 1 33 0 3 1647 417 276 99 33 chr3 139287784 139287928 -20311855 - Lx9 LINE L1 -174 7470 7318 3 1647 399 275 0 44 chr3 139288074 139288188 -20311595 + MER3 DNA MER1_type 79 187 -22 3 1647 21 0 0 0 chr3 139288317 139288338 -20311445 + AT_rich Low_complexity Low_complexity 1 21 0 3 1647 22 56 0 0 chr3 139288378 139288414 -20311369 + AT_rich Low_complexity Low_complexity 1 36 0 3 1647 432 0 0 0 chr3 139288659 139288707 -20311076 + (CA)n Simple_repeat Simple_repeat 1 48 0 3 1647 1242 85 0 0 chr3 139288707 139288883 -20310900 + (GA)n Simple_repeat Simple_repeat 2 178 0 3 1647 3199 243 46 20 chr3 139288940 139289114 -20310669 + Lx6 LINE L1 5654 5826 -1634 3 1647 265 24 48 0 chr3 139289114 139289156 -20310627 + (CAAA)n Simple_repeat Simple_repeat 2 45 0 3 1647 3199 243 46 20 chr3 139289156 139289824 -20309959 + Lx6 LINE L1 5827 6518 -942 3 1647 22 0 0 0 chr3 139290092 139290114 -20309669 + AT_rich Low_complexity Low_complexity 1 22 0 3 1647 569 345 69 53 chr3 139290283 139290773 -20309010 - MLT1F2 LTR MaLR -62 498 1 3 1647 4010 32 0 0 chr3 139291121 139291625 -20308158 - L1Md_T LINE L1 -662 5920 5417 3 1647 2605 51 9 3 chr3 139291625 139291960 -20307823 + L1Md_F3 LINE L1 6248 6584 0 3 1647 414 192 0 0 chr3 139291984 139292057 -20307726 - Lx5 LINE L1 -1064 5986 5914 3 1647 4529 146 37 13 chr3 139292058 139292836 -20306947 - Lx2B LINE L1 -1 6999 6203 3 1647 900 176 21 89 chr3 139292838 139293075 -20306708 - Lx5 LINE L1 -419 5458 5238 3 1647 2320 212 80 32 chr3 139293075 139293601 -20306182 + Lx5 LINE L1 6222 6772 -278 3 1647 237 33 0 0 chr3 139293602 139293632 -20306151 + (TC)n Simple_repeat Simple_repeat 2 31 0 3 1647 1625 204 11 14 chr3 139293634 139293982 -20305801 - Lx3C LINE L1 -18 6958 6612 3 1647 309 114 0 0 chr3 139293982 139294026 -20305757 - L1_Mus3 LINE L1 -120 6518 6475 3 1647 4536 151 67 7 chr3 139294020 139295247 -20304536 - Lx3C LINE L1 -604 6372 5076 3 1647 1047 250 107 8 chr3 139295246 139295480 -20304303 + Lx5 LINE L1 6786 7042 -8 3 1647 254 182 186 29 chr3 139297782 139297884 -20301899 - MER34A1 LTR ERV1 -8 579 462 3 1647 6456 65 7 43 chr3 139298667 139298724 -20301059 + L1_Mus2 LINE L1 5697 5751 -815 3 1647 1089 95 0 0 chr3 139298724 139298871 -20300912 + B1_Mus1 SINE Alu 2 148 0 3 1647 890 98 105 0 chr3 139298879 139299012 -20300771 + B1_Mus2 SINE Alu 1 147 0 4 1647 6456 65 7 43 chr3 139299012 139299848 -20299935 + L1_Mus2 LINE L1 5752 6566 0 3 1647 192 325 26 13 chr3 139301740 139301818 -20297965 - MIR SINE MIR -92 170 92 4 1647 587 308 0 14 chr3 139302708 139302856 -20296927 - B3 SINE B2 -43 173 28 4 1647 4327 110 22 0 chr3 139302902 139303538 -20296245 - Lx2 LINE L1 0 6997 6348 4 1647 4329 45 0 7 chr3 139303611 139304152 -20295631 - L1Md_F3 LINE L1 0 6584 6048 4 1647 638 336 48 44 chr3 139305429 139305681 -20294102 + B4A SINE B4 22 274 -18 4 1647 189 0 0 0 chr3 139305724 139305745 -20294038 + (CA)n Simple_repeat Simple_repeat 1 21 0 4 1647 37 0 0 0 chr3 139305891 139305928 -20293855 + AT_rich Low_complexity Low_complexity 1 37 0 4 1647 38 0 0 0 chr3 139306151 139306189 -20293594 + AT_rich Low_complexity Low_complexity 1 38 0 4 1647 1168 212 40 22 chr3 139306279 139306554 -20293229 + ORR1D1 LTR MaLR 1 280 -94 4 1647 310 288 0 0 chr3 139306810 139306876 -20292907 - ID4_ SINE ID -17 66 1 4 1647 1871 106 40 7 chr3 139306989 139307265 -20292518 + ORR1A3 LTR MaLR 1 285 -41 4 1647 2760 52 6 6 chr3 139307265 139307645 -20292138 + L1Md_F2 LINE L1 6214 6582 0 4 1647 359 127 0 0 chr3 139307681 139307736 -20292047 + ORR1A3 LTR MaLR 272 326 0 4 1647 24 32 0 0 chr3 139308606 139308637 -20291146 + AT_rich Low_complexity Low_complexity 1 31 0 4 1647 201 231 0 0 chr3 139309134 139309173 -20290610 + C-rich Low_complexity Low_complexity 3 41 0 4 1647 203 116 23 23 chr3 139309566 139309610 -20290173 + T-rich Low_complexity Low_complexity 2 45 0 4 1647 1420 181 97 76 chr3 139313636 139314006 -20285777 - ORR1C1 LTR MaLR 0 378 1 4 1647 24 67 0 0 chr3 139314216 139314261 -20285522 + AT_rich Low_complexity Low_complexity 1 45 0 4 1647 460 263 19 25 chr3 139315153 139315314 -20284469 - B3 SINE B2 -34 161 1 4 1647 265 292 188 33 chr3 139315509 139315902 -20283881 - L1ME2z LINE L1 -524 5920 5467 4 1647 28 86 0 0 chr3 139316345 139316415 -20283368 + AT_rich Low_complexity Low_complexity 1 70 0 4 1647 1533 311 126 17 chr3 139316735 139316957 -20282826 - Lx8 LINE L1 -295 7178 6954 4 1647 1476 6 0 0 chr3 139316957 139317131 -20282652 + L1Md_A LINE L1 6409 6582 0 4 1647 1533 311 126 17 chr3 139317131 139317150 -20282633 - Lx8 LINE L1 -520 6953 6930 4 1647 570 29 0 0 chr3 139317150 139317218 -20282565 + (TG)n Simple_repeat Simple_repeat 1 68 0 4 1647 1533 311 126 17 chr3 139317218 139317839 -20281944 - Lx8 LINE L1 -544 6929 6222 4 1647 504 336 104 39 chr3 139318025 139318467 -20281316 - L1MD2 LINE L1 -347 6012 5542 4 1647 24 32 0 0 chr3 139318600 139318631 -20281152 + AT_rich Low_complexity Low_complexity 1 31 0 4 1647 22 56 0 0 chr3 139320574 139320610 -20279173 + AT_rich Low_complexity Low_complexity 1 36 0 4 1647 1605 159 181 0 chr3 139322420 139322740 -20277043 - ORR1C1 LTR MaLR 0 378 1 4 1647 28 29 0 0 chr3 139324006 139324041 -20275742 + AT_rich Low_complexity Low_complexity 1 35 0 4 1647 193 29 29 29 chr3 139325119 139325154 -20274629 + (CAAAA)n Simple_repeat Simple_repeat 1 35 0 4 1647 533 295 212 15 chr3 139325270 139325586 -20274197 - MTEb LTR MaLR -2 377 8 4 1647 1065 56 28 0 chr3 139325656 139325799 -20273984 + B1_Mus1 SINE Alu 2 148 0 4 1647 320 0 25 0 chr3 139325814 139325854 -20273929 + (CAA)n Simple_repeat Simple_repeat 2 42 0 4 1647 805 109 109 0 chr3 139325871 139326009 -20273774 + B2_Mm2 SINE B2 19 171 -24 4 1647 327 49 0 0 chr3 139326026 139326067 -20273716 + (CA)n Simple_repeat Simple_repeat 2 42 0 4 1647 216 0 0 0 chr3 139327373 139327397 -20272386 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 4 1647 1312 329 93 43 chr3 139327544 139328234 -20271549 + MER21B LTR ERV1 42 765 -98 4 1647 232 67 43 43 chr3 139328298 139328345 -20271438 - L1MB2 LINE L1 -8 6163 6117 4 1648 582 312 63 53 chr3 139330632 139331306 -20268477 - L1MEg2 LINE L1 -5456 996 671 4 1648 189 0 0 0 chr3 139331627 139331648 -20268135 + (CA)n Simple_repeat Simple_repeat 2 22 0 4 1648 778 256 144 62 chr3 139333718 139334059 -20265724 - Lx8 LINE L1 -3 7470 7102 4 1648 414 57 0 0 chr3 139334770 139334823 -20264960 + (TG)n Simple_repeat Simple_repeat 2 54 0 4 1648 632 275 89 43 chr3 139334840 139335098 -20264685 - B4A SINE B4 -18 274 5 4 1648 663 67 0 22 chr3 139335191 139335283 -20264500 - B2_Mm1a SINE B2 -23 170 81 4 1648 535 269 8 10 chr3 139335656 139335803 -20263980 - B3A SINE B2 -46 147 9 4 1648 1684 224 33 48 chr3 139336261 139336717 -20263066 + Lx9 LINE L1 6392 6840 -804 4 1648 22 0 0 0 chr3 139337501 139337523 -20262260 + AT_rich Low_complexity Low_complexity 1 22 0 4 1648 183 42 0 0 chr3 139337611 139337635 -20262148 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 4 1648 22 56 0 0 chr3 139337887 139337923 -20261860 + AT_rich Low_complexity Low_complexity 1 36 0 4 1648 301 297 0 73 chr3 139338267 139338376 -20261407 - RMER12 LTR ERVK -476 846 746 4 1648 768 240 41 5 chr3 139338635 139338832 -20260951 - Lx9 LINE L1 -184 7460 7257 4 1648 379 301 258 21 chr3 139339383 139339716 -20260067 + L2a LINE L2 2033 2444 -975 4 1648 380 264 71 65 chr3 139339773 139339927 -20259856 - RSINE1 SINE B4 0 165 11 4 1648 268 346 135 11 chr3 139339939 139340199 -20259584 + L2a LINE L2 2471 2762 -657 4 1648 531 0 0 0 chr3 139340247 139340306 -20259477 + (TG)n Simple_repeat Simple_repeat 2 60 0 4 1648 302 391 79 9 chr3 139340548 139340863 -20258920 + L2a LINE L2 3054 3390 -36 4 1648 21 0 0 0 chr3 139340961 139340982 -20258801 + AT_rich Low_complexity Low_complexity 1 21 0 4 1648 30 0 0 0 chr3 139341437 139341467 -20258316 + AT_rich Low_complexity Low_complexity 1 30 0 4 1648 330 242 91 95 chr3 139342560 139342578 -20257205 + RLTR21 LTR ERVK 1013 1027 -545 4 1648 1406 60 38 5 chr3 139342578 139342763 -20257020 + B2_Mm2 SINE B2 2 192 -3 4 1648 330 242 91 95 chr3 139342763 139343040 -20256743 + RLTR21 LTR ERVK 1028 1306 -266 4 1648 277 370 83 0 chr3 139343065 139343173 -20256610 - RSINE1 SINE B4 -23 142 26 4 1648 495 0 0 0 chr3 139344226 139344281 -20255502 + (TG)n Simple_repeat Simple_repeat 2 56 0 4 1648 2486 164 63 22 chr3 139344561 139345049 -20254734 + Lx3C LINE L1 6467 6974 -2 4 1648 308 100 0 0 chr3 139345489 139345529 -20254254 - HAL1-3A_ME LINE L1 -844 2014 1975 4 1648 309 376 79 20 chr3 139345532 139345684 -20254099 - RSINE1 SINE B4 -1 164 4 4 1648 28 48 0 0 chr3 139345786 139345828 -20253955 + AT_rich Low_complexity Low_complexity 1 42 0 4 1648 8205 37 4 1 chr3 139346060 139347228 -20252555 - L1Md_F3 LINE L1 -16 6568 5397 4 1648 352 78 20 0 chr3 139347227 139347278 -20252505 + L1Md_F3 LINE L1 5334 5385 -498 4 1648 2665 141 7 39 chr3 139347289 139347753 -20252030 - RMER16 LTR ERVK -84 449 1 4 1648 9209 110 18 5 chr3 139347753 139349128 -20250655 - RMER16-int LTR ERVK 0 5406 4014 4 1648 2840 129 26 9 chr3 139349533 139349994 -20249789 - Lx3A LINE L1 -4 6977 6509 4 1648 880 122 120 0 chr3 139349994 139350153 -20249630 - Lx3A LINE L1 -1106 5875 5707 4 1648 198 71 0 0 chr3 139352223 139352251 -20247532 + (TG)n Simple_repeat Simple_repeat 1 28 0 4 1648 327 49 0 0 chr3 139352251 139352291 -20247492 + (GA)n Simple_repeat Simple_repeat 1 41 0 4 1648 529 307 12 18 chr3 139352300 139352466 -20247317 - B3A SINE B2 -33 165 1 4 1648 405 298 27 47 chr3 139352687 139352835 -20246948 + RSINE1 SINE B4 4 148 -17 4 1648 210 37 0 0 chr3 139354283 139354310 -20245473 + (TTG)n Simple_repeat Simple_repeat 2 28 0 4 1648 1113 82 7 0 chr3 139354330 139354476 -20245307 - B1_Mus1 SINE Alu 0 148 2 4 1648 2558 105 60 17 chr3 139354518 139354917 -20244866 + Lx3A LINE L1 6542 6962 -19 4 1648 432 0 0 0 chr3 139354917 139354965 -20244818 + (TA)n Simple_repeat Simple_repeat 2 49 0 4 1648 441 0 0 0 chr3 139354965 139355013 -20244770 + (TG)n Simple_repeat Simple_repeat 2 50 0 4 1648 2558 105 60 17 chr3 139355013 139355029 -20244754 + Lx3A LINE L1 6963 6975 -6 4 1648 226 328 69 0 chr3 139355168 139355299 -20244484 + L1MC LINE L1 5377 5516 -2269 4 1648 8254 106 28 38 chr3 139355395 139356734 -20243049 - Lx3A LINE L1 -7 6974 5649 4 1648 558 304 28 39 chr3 139356988 139357272 -20242511 - RLTR15 LTR ERVK -65 294 14 4 1648 271 311 9 9 chr3 139357302 139357409 -20242374 + L1ME3A LINE L1 4963 5069 -1077 4 1648 842 280 54 19 chr3 139357410 139357731 -20242052 - MTE2b LTR MaLR -10 369 1 4 1648 312 209 33 11 chr3 139357733 139357825 -20241958 + (TA)n Simple_repeat Simple_repeat 1 94 0 4 1648 745 192 0 22 chr3 139357826 139358007 -20241776 + (TATATG)n Simple_repeat Simple_repeat 1 177 0 4 1648 340 243 0 18 chr3 139357979 139358092 -20241691 + (TA)n Simple_repeat Simple_repeat 2 112 0 4 1648 555 336 63 19 chr3 139358152 139358489 -20241294 - MLT1A0 LTR MaLR -12 353 1 4 1648 381 324 105 30 chr3 139358605 139358910 -20240873 + L1ME3A LINE L1 5573 5900 -273 4 1648 432 0 0 0 chr3 139359079 139359127 -20240656 + (TG)n Simple_repeat Simple_repeat 1 48 0 4 1648 587 263 32 0 chr3 139360086 139360272 -20239511 - Lx9 LINE L1 -131 7513 7322 4 1648 223 179 0 0 chr3 139360467 139360506 -20239277 - B3 SINE B2 -176 40 2 4 1648 670 210 104 35 chr3 139360611 139360813 -20238970 + B3 SINE B2 1 216 0 4 1648 229 344 12 25 chr3 139360996 139361157 -20238626 - L1MC4 LINE L1 -185 7857 7699 4 1648 405 0 0 0 chr3 139361280 139361325 -20238458 + (TCTA)n Simple_repeat Simple_repeat 4 48 0 4 1648 30 59 0 0 chr3 139362571 139362622 -20237161 + AT_rich Low_complexity Low_complexity 1 51 0 4 1648 857 233 52 5 chr3 139363224 139363435 -20236348 + URR1B DNA MER1_type 1 221 -4 4 1648 187 60 80 45 chr3 139364272 139364360 -20235423 + (TA)n Simple_repeat Simple_repeat 1 91 0 4 1648 21 57 0 0 chr3 139364437 139364472 -20235311 + AT_rich Low_complexity Low_complexity 1 35 0 4 1648 31 0 0 0 chr3 139365015 139365046 -20234737 + AT_rich Low_complexity Low_complexity 1 31 0 4 1648 302 295 43 43 chr3 139365737 139365854 -20233929 - L1MEe LINE L1 -4576 278 162 4 1648 8835 71 13 21 chr3 139366990 139368633 -20231150 - L1Md_A LINE L1 -5 7053 5458 4 1648 16165 9 0 0 chr3 139368627 139370490 -20229293 + L1_Mm LINE L1 2609 4471 -1412 4 1648 1131 66 0 0 chr3 139370840 139370977 -20228806 - B1_Mus1 SINE Alu -10 138 2 4 1648 30 0 0 0 chr3 139372273 139372303 -20227480 + AT_rich Low_complexity Low_complexity 1 30 0 5 1648 278 333 135 19 chr3 139372760 139373072 -20226711 - L1M2 LINE L1 -4195 2654 2307 5 1648 204 146 24 0 chr3 139373271 139373312 -20226471 + T-rich Low_complexity Low_complexity 3 44 0 5 1648 418 286 97 32 chr3 139373331 139373793 -20225990 - L1M2 LINE L1 -4776 2073 1582 5 1648 542 324 39 10 chr3 139375794 139376000 -20223783 + MLT1C LTR MaLR 133 344 -123 5 1648 189 0 0 0 chr3 139377226 139377247 -20222536 + (TTC)n Simple_repeat Simple_repeat 1 21 0 5 1648 882 169 0 0 chr3 139377243 139377409 -20222374 + CT-rich Low_complexity Low_complexity 4 169 0 5 1648 1002 209 133 34 chr3 139377454 139377717 -20222066 - Lx6 LINE L1 -678 6782 6494 5 1648 24 0 0 0 chr3 139377918 139377942 -20221841 + AT_rich Low_complexity Low_complexity 1 24 0 5 1648 9209 117 6 14 chr3 139377943 139379417 -20220366 - Lx3A LINE L1 -5 6976 5520 5 1648 2072 264 48 64 chr3 139379416 139380776 -20219007 + Lx9 LINE L1 4707 6050 -1594 5 1648 2062 217 102 26 chr3 139380796 139381403 -20218380 + Lx9 LINE L1 6985 7637 -7 5 1648 1062 277 123 27 chr3 139381443 139381741 -20218042 + Lx8 LINE L1 5336 5655 -519 5 1648 1020 40 0 0 chr3 139381741 139381866 -20217917 + (TCTA)n Simple_repeat Simple_repeat 2 126 0 5 1648 1062 273 105 33 chr3 139381866 139382222 -20217561 + Lx8 LINE L1 5611 5988 -1485 5 1648 210 346 0 56 chr3 139384097 139384204 -20215579 + MIRc SINE MIR 112 212 -56 5 1648 544 301 88 61 chr3 139385438 139385767 -20214016 - MLT1C LTR MaLR -129 338 1 5 1648 1755 145 114 0 chr3 139386455 139386772 -20213011 + L1_Mur2 LINE L1 4882 5234 -643 5 1648 4598 192 99 29 chr3 139386806 139387859 -20211924 + Lx4B LINE L1 5929 7054 -4 5 1648 643 209 151 59 chr3 139387925 139388164 -20211619 - L1_Mur3 LINE L1 -6974 738 478 5 1648 588 303 38 24 chr3 139388179 139388392 -20211391 - ID_B1 SINE B4 -7 217 2 5 1648 323 228 51 0 chr3 139388417 139388496 -20211287 + B4 SINE B4 6 88 -204 5 1648 396 0 0 0 chr3 139388860 139388904 -20210879 + (TG)n Simple_repeat Simple_repeat 2 45 0 5 1648 4542 215 93 26 chr3 139389239 139389343 -20210440 - Lx9 LINE L1 -7 7637 7525 5 1648 185 108 0 26 chr3 139389343 139389381 -20210402 + (TA)n Simple_repeat Simple_repeat 1 37 0 5 1648 4542 215 93 26 chr3 139389381 139389571 -20210212 - Lx9 LINE L1 -120 7524 7318 5 1648 6033 38 14 1 chr3 139389571 139390314 -20209469 - L1Md_F3 LINE L1 -12 6572 5821 5 1648 4542 215 93 26 chr3 139390314 139391266 -20208517 - Lx9 LINE L1 -327 7317 6307 5 1648 414 0 0 0 chr3 139391472 139391518 -20208265 + (CAAAA)n Simple_repeat Simple_repeat 5 50 0 5 1648 342 358 57 53 chr3 139393096 139393341 -20206442 - MIR SINE MIR -10 252 7 5 1648 213 39 0 0 chr3 139393521 139393547 -20206236 + (TTTG)n Simple_repeat Simple_repeat 4 29 0 5 1648 22 35 0 0 chr3 139394241 139394270 -20205513 + AT_rich Low_complexity Low_complexity 1 29 0 5 1648 1981 123 35 3 chr3 139394656 139394966 -20204817 - ORR1A2 LTR MaLR -7 320 1 5 1648 236 125 138 0 chr3 139394966 139395080 -20204703 + (CATAT)n Simple_repeat Simple_repeat 1 129 0 5 1648 393 22 0 0 chr3 139395090 139395136 -20204647 + (TA)n Simple_repeat Simple_repeat 2 47 0 5 1648 252 0 0 0 chr3 139395136 139395163 -20204620 + (TG)n Simple_repeat Simple_repeat 1 28 0 5 1648 224 317 260 0 chr3 139395835 139395958 -20203825 - MER5A DNA MER1_type -18 171 17 5 1648 292 316 123 0 chr3 139398003 139398041 -20201742 - MLT1B LTR MaLR -12 378 338 5 1648 402 21 0 0 chr3 139398041 139398088 -20201695 + (CA)n Simple_repeat Simple_repeat 2 48 0 5 1648 292 316 123 0 chr3 139398088 139398163 -20201620 - MLT1B LTR MaLR -53 337 252 5 1648 540 322 115 35 chr3 139398805 139399366 -20200417 + L1MCc LINE L1 1081 1774 -5354 5 1648 252 328 99 10 chr3 139399382 139399675 -20200108 + L1MCc LINE L1 4529 4847 -2094 5 1648 350 352 87 45 chr3 139400753 139401018 -20198765 - L2 LINE L2 -557 2862 2587 5 1648 204 347 57 16 chr3 139401771 139401894 -20197889 - L2 LINE L2 -359 3060 2933 5 1648 271 235 29 0 chr3 139404269 139404337 -20195446 + (TCCA)n Simple_repeat Simple_repeat 1 70 0 5 1648 874 211 162 19 chr3 139404363 139404448 -20195335 - RMER1C Other Other -19 1323 1199 5 1648 611 0 19 48 chr3 139404448 139404552 -20195231 + (CAAAA)n Simple_repeat Simple_repeat 2 102 0 5 1648 874 211 162 19 chr3 139404552 139404737 -20195046 - RMER1C Other Other -144 1198 1015 5 1648 219 69 0 0 chr3 139404738 139404767 -20195016 + (AGGTG)n Simple_repeat Simple_repeat 4 32 0 5 1648 619 253 44 0 chr3 139404768 139404926 -20194857 - RMER1C Other Other -364 978 814 5 1648 322 325 61 61 chr3 139405150 139405314 -20194469 - MLT2D LTR ERVL -62 352 189 5 1648 662 328 114 3 chr3 139405331 139405637 -20194146 + MLT1A0 LTR MaLR 26 365 0 5 1648 407 288 53 27 chr3 139405637 139405785 -20193998 - MLT2D LTR ERVL -260 154 3 5 1648 317 232 58 18 chr3 139405807 139405978 -20193805 + (TCTA)n Simple_repeat Simple_repeat 1 178 0 5 1648 193 119 48 0 chr3 139406030 139406072 -20193711 + (TCTA)n Simple_repeat Simple_repeat 4 47 0 5 1648 681 85 65 0 chr3 139406094 139406247 -20193536 + (TCTA)n Simple_repeat Simple_repeat 4 166 0 5 1648 3734 194 22 11 chr3 139406814 139407549 -20192234 + Lx2B LINE L1 6253 6995 -5 5 1648 5029 178 71 6 chr3 139408070 139409180 -20190603 - Lx3C LINE L1 -12 6964 5783 5 1648 25 0 0 0 chr3 139409247 139409272 -20190511 + AT_rich Low_complexity Low_complexity 1 25 0 5 1648 1853 306 103 43 chr3 139410270 139411310 -20188473 - Lx9 LINE L1 -224 7420 6319 5 1648 269 237 13 26 chr3 139411475 139411553 -20188230 - Lx9 LINE L1 -1670 5974 5898 5 1648 372 260 64 45 chr3 139411665 139411822 -20187961 - Lx9 LINE L1 -38 5809 5650 5 1648 387 0 0 0 chr3 139411903 139411946 -20187837 + (GA)n Simple_repeat Simple_repeat 1 43 0 5 1648 279 287 31 21 chr3 139412174 139412270 -20187513 - MER77 LTR ERVL -92 515 419 5 1648 2900 140 71 10 chr3 139412305 139412840 -20186943 + RLTR13C1 LTR ERVK 433 983 0 5 1648 430 293 36 24 chr3 139412963 139413150 -20186633 - ORR1D2 LTR MaLR 0 378 188 5 1648 21 0 0 0 chr3 139413420 139413441 -20186342 + AT_rich Low_complexity Low_complexity 1 21 0 5 1648 252 0 0 0 chr3 139413506 139413534 -20186249 + (TA)n Simple_repeat Simple_repeat 2 29 0 5 1648 883 160 14 0 chr3 139413539 139413683 -20186100 - B1_Mus2 SINE Alu 0 147 2 5 1648 1057 327 65 54 chr3 139413731 139414284 -20185499 + MLT1E2 LTR MaLR 34 592 -35 5 1648 532 285 78 39 chr3 139414905 139415135 -20184648 - MLT1E1 LTR MaLR -6 648 410 5 1648 506 224 216 0 chr3 139416360 139416494 -20183289 - B3 SINE B2 -48 168 6 5 1648 426 20 0 0 chr3 139416516 139416567 -20183216 + (TG)n Simple_repeat Simple_repeat 1 51 0 5 1648 21 0 0 0 chr3 139417434 139417455 -20182328 + AT_rich Low_complexity Low_complexity 1 21 0 5 1648 270 164 0 0 chr3 139419095 139419150 -20180633 + CT-rich Low_complexity Low_complexity 2 56 0 5 1648 2605 80 68 24 chr3 139419220 139419603 -20180180 - MTB LTR MaLR 0 400 1 5 1648 238 345 75 14 chr3 139419680 139419827 -20179956 - L2a LINE L2 0 3426 3271 5 1648 690 200 27 4 chr3 139419835 139420070 -20179713 + GA-rich Low_complexity Low_complexity 1 240 0 5 1648 1094 52 28 34 chr3 139420070 139420248 -20179535 + (GGGAGA)n Simple_repeat Simple_repeat 3 179 0 5 1648 690 161 29 6 chr3 139420248 139420273 -20179510 + polypurine Low_complexity Low_complexity 155 180 0 5 1648 454 315 179 27 chr3 139420482 139420896 -20178887 - L2a LINE L2 -527 2892 2416 5 1648 252 351 14 0 chr3 139420927 139421001 -20178782 + ID4 SINE ID 7 81 -2 5 1648 189 74 0 0 chr3 139421011 139421038 -20178745 + (TAA)n Simple_repeat Simple_repeat 1 27 0 5 1648 489 88 0 0 chr3 139421243 139421323 -20178460 + (CA)n Simple_repeat Simple_repeat 2 81 0 5 1648 1362 33 0 16 chr3 139422076 139422259 -20177524 + (TC)n Simple_repeat Simple_repeat 1 180 0 5 1648 539 317 89 58 chr3 139422262 139422657 -20177126 - Lx9 LINE L1 -307 7337 6931 5 1648 395 53 35 0 chr3 139422667 139422724 -20177059 + (TTTTC)n Simple_repeat Simple_repeat 2 60 0 5 1648 597 282 127 67 chr3 139422726 139423072 -20176711 - Lx8 LINE L1 -706 6767 6401 5 1648 414 57 0 0 chr3 139423122 139423175 -20176608 + (CA)n Simple_repeat Simple_repeat 2 54 0 5 1648 4256 223 10 80 chr3 139423908 139425042 -20174741 - RMER1B Other Other -10 1056 3 5 1648 1585 297 67 16 chr3 139425313 139425942 -20173841 - Lx8 LINE L1 -451 7022 6362 5 1648 1421 244 90 16 chr3 139425944 139426332 -20173451 - MTD LTR MaLR -2 417 1 5 1648 2977 29 0 0 chr3 139426377 139426722 -20173061 - L1Md_F2 LINE L1 -12 6570 6226 5 1648 4688 57 0 1 chr3 139426722 139427638 -20172145 + L1Md_F2 LINE L1 5295 6209 -375 5 1648 1369 256 86 57 chr3 139427638 139428185 -20171598 - MTC-int LTR MaLR -23 1235 673 5 1648 2722 72 0 19 chr3 139428206 139428572 -20171211 + L1_Mus1 LINE L1 6209 6567 0 5 1648 568 340 37 12 chr3 139429006 139429328 -20170455 + Lx8 LINE L1 7066 7395 -78 5 1648 26 30 0 0 chr3 139429357 139429390 -20170393 + AT_rich Low_complexity Low_complexity 1 33 0 5 1648 263 318 62 16 chr3 139429875 139430003 -20169780 - LTR48B LTR ERV1 -140 647 514 5 1648 446 294 68 0 chr3 139430021 139430184 -20169599 - LTR48B LTR ERV1 -348 296 123 5 1648 350 292 37 19 chr3 139430404 139430512 -20169271 - Tigger5 DNA MER2_type -2239 167 58 5 1648 3953 173 43 8 chr3 139430729 139431535 -20168248 - Lx2B LINE L1 -523 6477 5682 5 1648 373 276 92 25 chr3 139431776 139431895 -20167888 - RSINE1 SINE B4 -37 128 2 5 1648 1035 283 50 24 chr3 139432023 139432381 -20167402 - MTD LTR MaLR -4 415 5 5 1648 429 390 72 74 chr3 139433238 139433709 -20166074 - MER74A LTR ERVL -65 493 24 5 1648 223 309 90 12 chr3 139433815 139433964 -20165819 + MIRc SINE MIR 63 232 -30 5 1648 3687 51 2 15 chr3 139434031 139434508 -20165275 + L1Md_F2 LINE L1 6110 6580 -2 5 1648 312 196 108 0 chr3 139435002 139435104 -20164679 - Lx9 LINE L1 -3 7641 7529 5 1648 396 0 0 0 chr3 139435106 139435150 -20164633 + (TC)n Simple_repeat Simple_repeat 2 45 0 5 1648 342 98 0 0 chr3 139435150 139435200 -20164583 + (TG)n Simple_repeat Simple_repeat 2 52 0 5 1648 1380 204 75 21 chr3 139435273 139435649 -20164134 + Lx9 LINE L1 7018 7413 -231 5 1648 318 273 88 57 chr3 139436214 139436532 -20163251 - L1MCc LINE L1 -4617 2420 2093 5 1648 3832 35 2 0 chr3 139436594 139437045 -20162738 + L1Md_T LINE L1 6131 6582 0 5 1648 846 258 41 15 chr3 139437110 139437307 -20162476 - B3 SINE B2 -14 202 1 5 1648 4296 33 0 10 chr3 139437803 139438318 -20161465 - L1Md_F3 LINE L1 -1 6583 6074 5 1648 226 255 45 36 chr3 139438360 139438470 -20161313 - L1MCc LINE L1 -5028 1811 1701 5 1648 381 323 132 19 chr3 139438507 139438899 -20160884 - L1MCc LINE L1 -5288 1749 1155 5 1648 240 35 0 0 chr3 139439986 139440015 -20159768 + (TC)n Simple_repeat Simple_repeat 1 29 0 5 1648 354 176 0 0 chr3 139440015 139440100 -20159683 + (CA)n Simple_repeat Simple_repeat 2 86 0 5 1648 29 0 0 0 chr3 139440504 139440533 -20159250 + AT_rich Low_complexity Low_complexity 1 29 0 6 1648 347 74 37 0 chr3 139440546 139440600 -20159183 + (TATG)n Simple_repeat Simple_repeat 3 58 0 6 1648 683 283 50 6 chr3 139440604 139440764 -20159019 - B3A SINE B2 -27 171 5 6 1648 350 294 119 53 chr3 139442109 139442335 -20157448 - MLT1F2 LTR MaLR -38 522 282 6 1648 191 309 85 73 chr3 139442528 139442692 -20157091 + MIR SINE MIR 53 218 -44 6 1648 261 0 0 0 chr3 139442811 139442840 -20156943 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 6 1648 268 212 71 0 chr3 139443421 139443506 -20156277 + C-rich Low_complexity Low_complexity 2 92 0 6 1648 271 182 0 98 chr3 139445846 139445907 -20153876 + ID_B1 SINE B4 170 224 0 6 1648 367 304 98 33 chr3 139445933 139446086 -20153697 + RSINE1 SINE B4 3 165 0 6 1648 312 200 0 0 chr3 139447139 139447209 -20152574 + CT-rich Low_complexity Low_complexity 3 72 0 6 1648 1024 154 4 18 chr3 139447754 139448032 -20151751 + C-rich Low_complexity Low_complexity 1 273 0 6 1648 204 40 0 0 chr3 139448419 139448444 -20151339 + (TC)n Simple_repeat Simple_repeat 2 26 0 6 1648 337 309 89 93 chr3 139449504 139449761 -20150022 + MLT1B LTR MaLR 93 348 -42 6 1648 408 277 0 0 chr3 139449860 139450200 -20149583 + (TG)n Simple_repeat Simple_repeat 1 340 0 6 1648 664 317 121 12 chr3 139450228 139450477 -20149306 - B4A SINE B4 -12 280 5 6 1648 351 0 0 0 chr3 139450677 139450716 -20149067 + (TG)n Simple_repeat Simple_repeat 2 40 0 6 1648 302 245 72 111 chr3 139450986 139451193 -20148590 - RLTR40 LTR ERVK -50 767 569 6 1648 461 97 0 14 chr3 139451193 139451266 -20148517 + (TCTA)n Simple_repeat Simple_repeat 3 74 0 6 1648 448 287 211 16 chr3 139451290 139451574 -20148209 + MER34 LTR ERV1 5 344 -198 6 1648 833 245 34 14 chr3 139451589 139451796 -20147987 + B3 SINE B2 2 212 -4 6 1648 5145 218 60 20 chr3 139451983 139452464 -20147319 - Lx7 LINE L1 -495 7201 6695 6 1648 5516 60 29 0 chr3 139452464 139453179 -20146604 - L1Md_F2 LINE L1 0 6582 5847 6 1648 5145 218 60 20 chr3 139453179 139453658 -20146125 - Lx7 LINE L1 -1002 6694 6208 6 1648 470 79 13 0 chr3 139453658 139453734 -20146049 + (TCTA)n Simple_repeat Simple_repeat 4 80 0 6 1648 5145 218 60 20 chr3 139453734 139454089 -20145694 - Lx7 LINE L1 -1489 6207 5835 6 1648 7582 90 7 7 chr3 139454430 139456170 -20143613 + L1_Mus3 LINE L1 4903 6636 -2 6 1648 555 306 0 62 chr3 139457177 139457386 -20142397 - B3A SINE B2 0 198 3 6 1648 694 324 34 5 chr3 139458312 139458517 -20141266 + B4 SINE B4 3 213 -79 6 1649 1372 325 22 28 chr3 139460732 139461194 -20138589 + MT2A LTR ERVL 5 463 -70 6 1649 22 80 0 0 chr3 139461197 139461247 -20138536 + AT_rich Low_complexity Low_complexity 1 50 0 6 1649 302 355 112 18 chr3 139461549 139461718 -20138065 - ID_B1 SINE B4 -6 218 34 6 1649 236 228 43 11 chr3 139461718 139461811 -20137972 + (TA)n Simple_repeat Simple_repeat 2 97 0 6 1649 371 21 21 0 chr3 139462454 139462502 -20137281 + (TA)n Simple_repeat Simple_repeat 2 50 0 6 1649 4325 41 75 1 chr3 139462507 139463541 -20136242 - L1Md_F3 LINE L1 -14 6568 5458 6 1649 379 300 13 0 chr3 139463712 139463862 -20135921 + L1MD LINE L1 2726 2877 -3269 6 1649 296 291 86 45 chr3 139463973 139464369 -20135414 + L1MD LINE L1 3485 3896 -2250 6 1649 552 269 0 14 chr3 139464839 139464986 -20134797 + B1_Mur1 SINE Alu 1 145 -4 6 1649 1056 328 169 17 chr3 139465224 139465321 -20134462 + MER21B LTR ERV1 15 113 -750 6 1649 477 0 0 0 chr3 139465321 139465374 -20134409 + (TG)n Simple_repeat Simple_repeat 2 54 0 6 1649 1056 328 169 17 chr3 139465374 139465986 -20133797 + MER21B LTR ERV1 114 831 -32 6 1649 1740 156 57 9 chr3 139466025 139466356 -20133427 - RLTR30 LTR ERV1 0 379 33 6 1649 396 230 15 7 chr3 139466659 139466795 -20132988 + GA-rich Low_complexity Low_complexity 2 138 0 6 1649 454 308 77 45 chr3 139466820 139467224 -20132559 + L1MD LINE L1 5296 5712 -530 6 1649 1133 70 6 0 chr3 139467269 139467425 -20132358 + (TTCC)n Simple_repeat Simple_repeat 2 158 0 6 1649 262 348 65 38 chr3 139468874 139469059 -20130724 + ORR1E LTR MaLR 1 190 -169 6 1649 1409 229 132 85 chr3 139469931 139470471 -20129312 + RMER4B LTR ERVK 19 583 -2 6 1649 510 46 0 0 chr3 139470790 139470855 -20128928 + (TC)n Simple_repeat Simple_repeat 2 66 0 6 1649 4956 136 27 22 chr3 139471878 139472811 -20126972 + Lx5 LINE L1 4921 5863 -1187 6 1649 3386 25 5 8 chr3 139472811 139473208 -20126575 - MTA_Mm LTR MaLR 0 396 1 6 1649 2248 151 11 45 chr3 139473208 139473387 -20126396 + Lx5 LINE L1 5864 6037 -1013 6 1649 620 250 0 0 chr3 139473389 139473529 -20126254 + Lx5 LINE L1 6704 6843 -207 6 1649 4710 181 76 30 chr3 139473529 139474307 -20125476 + RLTR25B LTR ERVK 1 820 -208 6 1649 423 0 0 0 chr3 139474307 139474354 -20125429 + (CA)n Simple_repeat Simple_repeat 2 48 0 6 1649 4710 181 76 30 chr3 139474354 139474557 -20125226 + RLTR25B LTR ERVK 821 1028 0 6 1649 671 197 163 0 chr3 139474560 139474738 -20125045 + Lx5 LINE L1 6842 7048 -2 6 1649 23 0 0 0 chr3 139475090 139475113 -20124670 + AT_rich Low_complexity Low_complexity 1 23 0 6 1649 353 229 9 103 chr3 139475163 139475270 -20124513 + B1F SINE Alu 53 149 0 6 1649 948 161 4 0 chr3 139475289 139475501 -20124282 + GA-rich Low_complexity Low_complexity 1 212 0 6 1649 4336 4 0 66 chr3 139475501 139476029 -20123754 - MT2_Mm LTR ERVL 0 493 1 6 1649 269 315 156 51 chr3 139477252 139477824 -20121959 + L1MB8 LINE L1 5272 5903 -275 6 1649 347 289 173 19 chr3 139478579 139478787 -20120996 - ORR1E LTR MaLR -22 337 98 6 1649 37600 28 2 10 chr3 139478787 139484996 -20114787 - L1Md_A LINE L1 -5 6577 422 6 1649 606 254 28 143 chr3 139485000 139485216 -20114567 - B3A SINE B2 0 198 4 6 1649 8467 112 28 8 chr3 139485967 139487405 -20112378 - Lx2 LINE L1 -8 6989 5524 6 1649 22 35 0 0 chr3 139487871 139487900 -20111883 + AT_rich Low_complexity Low_complexity 1 29 0 6 1649 541 276 24 57 chr3 139489984 139490195 -20109588 + B3 SINE B2 1 204 -12 6 1649 348 224 46 9 chr3 139490263 139490371 -20109412 + Lx9 LINE L1 7524 7635 -9 6 1649 914 195 122 33 chr3 139490836 139491138 -20108645 - Lx4B LINE L1 -5 7053 6725 6 1649 632 307 163 24 chr3 139491188 139491612 -20108171 - MLT1D LTR MaLR 0 505 23 6 1649 651 341 51 72 chr3 139491699 139491956 -20107827 - MER97c DNA MER1_type? -487 603 366 6 1649 432 0 0 0 chr3 139491956 139492004 -20107779 + (CA)n Simple_repeat Simple_repeat 2 49 0 6 1649 651 341 51 72 chr3 139492004 139492232 -20107551 - MER97c DNA MER1_type? -725 365 128 6 1649 4401 139 59 18 chr3 139492403 139492519 -20107264 - Lx2 LINE L1 -1 6996 6884 6 1649 189 0 0 0 chr3 139492519 139492540 -20107243 + (CCCA)n Simple_repeat Simple_repeat 1 21 0 6 1649 4401 139 59 18 chr3 139492540 139493187 -20106596 - Lx2 LINE L1 -114 6883 6202 6 1649 287 232 119 124 chr3 139493198 139493400 -20106383 - Tigger9b DNA MER2_type -50 574 374 6 1649 249 327 94 62 chr3 139493534 139493694 -20106089 - Tigger9b DNA MER2_type -437 187 23 6 1649 2414 63 0 15 chr3 139493939 139494333 -20105450 + L1_Mus1 LINE L1 6248 6567 0 6 1649 181 297 129 21 chr3 139494423 139494516 -20105267 + MIRb SINE MIR 43 145 -123 6 1649 490 347 61 0 chr3 139494687 139494834 -20104949 + B3A SINE B2 13 168 -30 6 1649 411 21 0 0 chr3 139494836 139494884 -20104899 + (CA)n Simple_repeat Simple_repeat 1 48 0 6 1649 249 119 0 0 chr3 139494884 139494926 -20104857 + (GA)n Simple_repeat Simple_repeat 1 42 0 6 1649 405 0 0 0 chr3 139496072 139496117 -20103666 + (CA)n Simple_repeat Simple_repeat 1 45 0 6 1649 2861 39 129 0 chr3 139497647 139498011 -20101772 - IAPLTR2a LTR ERVK 0 411 1 6 1649 711 277 90 11 chr3 139498241 139498518 -20101265 + L1_Mur3 LINE L1 244 542 -7170 6 1649 515 276 7 20 chr3 139498514 139498662 -20101121 + Lx7 LINE L1 7087 7232 -464 6 1649 344 245 0 21 chr3 139498660 139498756 -20101027 + Lx7 LINE L1 7176 7269 -427 6 1649 2480 115 115 0 chr3 139498757 139499184 -20100599 - Lx2 LINE L1 -754 6243 5768 6 1649 1645 118 4 8 chr3 139499184 139499432 -20100351 + Lx2 LINE L1 6749 6995 -2 6 1649 248 225 0 78 chr3 139499433 139499510 -20100273 + Lx7 LINE L1 7298 7368 -328 6 1649 360 247 48 0 chr3 139499522 139499688 -20100095 + (TA)n Simple_repeat Simple_repeat 2 175 0 6 1649 442 235 6 89 chr3 139499703 139499871 -20099912 + Lx7 LINE L1 7358 7511 -185 6 1649 509 172 11 0 chr3 139500000 139500087 -20099696 - B1_Mus2 SINE Alu -25 122 35 1 1649 414 252 17 0 chr3 139500106 139500221 -20099562 + Lx7 LINE L1 7559 7675 -21 2 1649 297 0 0 0 chr3 139500227 139500260 -20099523 + (CTAA)n Simple_repeat Simple_repeat 3 35 0 3 1649 4710 106 21 21 chr3 139500476 139501180 -20098603 + Lx LINE L1 5944 6647 -7 4 1649 278 138 0 17 chr3 139501467 139501526 -20098257 + (CA)n Simple_repeat Simple_repeat 2 59 0 5 1649 396 0 0 0 chr3 139501744 139501788 -20097995 + (TATAA)n Simple_repeat Simple_repeat 4 47 0 6 1649 220 373 46 7 chr3 139502241 139502392 -20097391 - L2a LINE L2 -278 3148 2992 7 1649 243 0 0 0 chr3 139502512 139502539 -20097244 + (TC)n Simple_repeat Simple_repeat 2 28 0 8 1649 483 216 0 0 chr3 139502539 139502650 -20097133 + (CATATA)n Simple_repeat Simple_repeat 4 114 0 9 1649 203 278 17 34 chr3 139502658 139502777 -20097006 + T-rich Low_complexity Low_complexity 4 120 0 1 1649 2707 238 52 30 chr3 139502796 139503691 -20096092 - Lx5 LINE L1 -307 6743 5780 1 1649 24 32 0 0 chr3 139504103 139504134 -20095649 + AT_rich Low_complexity Low_complexity 1 31 0 1 1649 577 333 47 18 chr3 139504642 139504813 -20094970 - B3A SINE B2 -22 176 1 1 1649 641 161 68 0 chr3 139505186 139505304 -20094479 - Lx7 LINE L1 -792 6904 6779 1 1649 676 142 15 7 chr3 139505316 139505451 -20094332 + CT-rich Low_complexity Low_complexity 3 138 0 1 1649 1161 257 3 3 chr3 139505461 139505754 -20094029 - Lx6 LINE L1 -724 6736 6444 1 1649 288 0 0 0 chr3 139507074 139507106 -20092677 + (CATA)n Simple_repeat Simple_repeat 1 32 0 1 1649 262 104 52 78 chr3 139508748 139508863 -20090920 + (TATAA)n Simple_repeat Simple_repeat 3 114 0 1 1649 205 75 24 24 chr3 139508956 139508997 -20090786 + (TA)n Simple_repeat Simple_repeat 2 42 0 1 1649 275 310 0 0 chr3 139509000 139509071 -20090712 + (TG)n Simple_repeat Simple_repeat 2 72 0 2 1649 352 266 13 0 chr3 139509914 139509993 -20089790 - ID4_ SINE ID -3 80 1 2 1649 274 330 19 9 chr3 139509999 139510106 -20089677 - PB1D10 SINE Alu -9 108 1 2 1649 25 51 0 0 chr3 139510450 139510489 -20089294 + AT_rich Low_complexity Low_complexity 1 39 0 2 1649 786 327 48 11 chr3 139511571 139511840 -20087943 + B4A SINE B4 12 290 -2 2 1649 710 145 7 0 chr3 139511852 139512004 -20087779 + (CA)n Simple_repeat Simple_repeat 1 153 0 2 1649 3067 112 19 37 chr3 139512358 139512842 -20086941 - MT2C_Mm LTR ERVL 0 475 1 2 1649 974 113 11 17 chr3 139514189 139514369 -20085414 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 2 1649 999 268 36 11 chr3 139515832 139516107 -20083676 - B4 SINE B4 -10 282 1 2 1649 352 320 111 30 chr3 139516127 139516362 -20083421 - L1MC1 LINE L1 -28 6480 6227 2 1649 802 297 113 28 chr3 139516418 139516929 -20082854 - L1MC1 LINE L1 -414 6094 5531 2 1649 329 0 24 0 chr3 139516929 139516970 -20082813 + (TTG)n Simple_repeat Simple_repeat 2 43 0 3 1649 1175 310 55 25 chr3 139516970 139517827 -20081956 - L1MC1 LINE L1 -792 5529 4647 2 1649 502 338 163 7 chr3 139518190 139518491 -20081292 + MLT1A0 LTR MaLR 18 365 0 3 1649 1054 264 41 123 chr3 139518520 139519085 -20080698 - L1MC1 LINE L1 -2812 3509 3020 2 1649 5780 62 1 0 chr3 139519085 139519815 -20079968 - L1_Mus1 LINE L1 -4 6563 5833 3 1649 1054 264 41 123 chr3 139519815 139520149 -20079634 - L1MC1 LINE L1 -3302 3019 2684 2 1649 428 259 63 23 chr3 139520578 139520752 -20079031 - L1MC1 LINE L1 -3758 2563 2383 2 1649 204 222 0 0 chr3 139520752 139520788 -20078995 + (TG)n Simple_repeat Simple_repeat 2 37 0 3 1649 25 31 0 0 chr3 139520848 139520880 -20078903 + AT_rich Low_complexity Low_complexity 1 32 0 3 1649 379 295 104 21 chr3 139520881 139521168 -20078615 - L1MC1 LINE L1 -4247 2261 1951 2 1649 26 0 0 0 chr3 139521300 139521326 -20078457 + AT_rich Low_complexity Low_complexity 1 26 0 3 1649 240 242 44 29 chr3 139521378 139521446 -20078337 - ID4 SINE ID -11 72 4 3 1649 339 195 168 0 chr3 139521471 139521584 -20078199 - L1MC1 LINE L1 -4768 1740 1609 2 1649 659 167 76 0 chr3 139521653 139521797 -20077986 + Lx3C LINE L1 6820 6974 -2 3 1649 707 255 80 0 chr3 139522150 139522350 -20077433 - B3 SINE B2 0 216 1 3 1649 189 0 0 0 chr3 139522409 139522430 -20077353 + (CA)n Simple_repeat Simple_repeat 1 21 0 3 1649 481 291 102 21 chr3 139522510 139522882 -20076901 - L1MC1 LINE L1 -5133 1375 974 2 1649 362 274 11 0 chr3 139522965 139523060 -20076723 - PB1D10 SINE Alu -5 112 17 4 1649 983 299 83 23 chr3 139523087 139523655 -20076128 - L1MC1 LINE L1 -5721 787 186 2 1649 3287 170 40 6 chr3 139525849 139526522 -20073261 - L1_Mur2 LINE L1 -664 5213 4518 4 1649 3304 165 68 3 chr3 139526542 139527521 -20072262 + Lx5 LINE L1 5253 6352 -698 4 1649 531 0 0 0 chr3 139527530 139527589 -20072194 + (GA)n Simple_repeat Simple_repeat 1 59 0 4 1649 1991 244 23 21 chr3 139527632 139528106 -20071677 + Lx5 LINE L1 6573 7047 -3 4 1649 205 252 236 35 chr3 139530103 139530247 -20069536 + MER5A DNA MER1_type 17 189 0 4 1649 251 244 22 22 chr3 139530425 139530517 -20069266 - L1MA7 LINE L1 -26 6265 6174 4 1649 272 91 23 0 chr3 139530840 139530884 -20068899 + (CATAT)n Simple_repeat Simple_repeat 1 45 0 4 1649 403 290 21 0 chr3 139530930 139531075 -20068708 - L1M2 LINE L1 -2266 3877 3730 4 1649 1794 186 70 3 chr3 139532089 139532434 -20067349 - Lx4A LINE L1 -2 7056 6689 4 1649 2954 112 6 14 chr3 139532432 139532922 -20066861 + L1_Mur2 LINE L1 5015 5500 -377 4 1649 300 357 102 25 chr3 139532957 139533198 -20066585 + L1_Rod LINE L1 5099 5354 -526 5 1649 1651 86 0 4 chr3 139533198 139533431 -20066352 - L1Md_F2 LINE L1 -3 6579 6348 5 1649 534 316 93 25 chr3 139533431 139533884 -20065899 + L1_Rod LINE L1 5355 5825 -55 5 1649 21 0 0 0 chr3 139534308 139534329 -20065454 + AT_rich Low_complexity Low_complexity 1 21 0 5 1649 273 354 60 55 chr3 139534873 139535046 -20064737 + MLT1G1 LTR MaLR 79 247 -302 5 1649 301 378 60 12 chr3 139535190 139535356 -20064427 + MLT1G1 LTR MaLR 404 577 -2 5 1649 6043 128 72 11 chr3 139535792 139537457 -20062326 + Lx LINE L1 4879 6652 -2 5 1649 837 233 234 43 chr3 139538204 139538554 -20061229 + MTD LTR MaLR 3 419 0 5 1649 1866 198 100 80 chr3 139538949 139539448 -20060335 - RMER20B LTR ERVK -118 509 1 5 1649 216 86 0 0 chr3 139539548 139539583 -20060200 + (A)n Simple_repeat Simple_repeat 1 35 0 5 1649 1459 319 84 26 chr3 139540236 139540970 -20058813 - Lx8 LINE L1 -130 7343 6567 5 1649 297 0 0 0 chr3 139541116 139541149 -20058634 + (CA)n Simple_repeat Simple_repeat 1 33 0 5 1649 374 221 0 0 chr3 139541241 139541309 -20058474 - B3 SINE B2 -146 70 3 6 1649 1533 180 0 115 chr3 139541947 139542032 -20057751 - Lx9 LINE L1 0 7644 7568 6 1649 1983 193 54 17 chr3 139542032 139542438 -20057345 - MTC LTR MaLR 0 421 1 6 1649 1533 180 0 115 chr3 139542438 139542822 -20056961 - Lx9 LINE L1 -77 7567 7229 6 1649 494 279 134 67 chr3 139543119 139543388 -20056395 - MLT1B LTR MaLR -72 318 32 6 1649 24 0 0 0 chr3 139544622 139544646 -20055137 + AT_rich Low_complexity Low_complexity 1 24 0 6 1649 2412 178 27 69 chr3 139545336 139545928 -20053855 - RMER2 LTR ERV1 0 567 1 6 1649 33 25 0 0 chr3 139546165 139546205 -20053578 + AT_rich Low_complexity Low_complexity 1 40 0 6 1649 264 189 33 22 chr3 139546629 139546721 -20053062 + (TATAA)n Simple_repeat Simple_repeat 4 96 0 6 1649 224 156 10 126 chr3 139548101 139548204 -20051579 + A-rich Low_complexity Low_complexity 1 91 0 6 1649 21 0 0 0 chr3 139550795 139550816 -20048967 + AT_rich Low_complexity Low_complexity 1 21 0 6 1649 184 260 271 0 chr3 139551339 139551435 -20048348 - MIRb SINE MIR -133 135 14 7 1649 975 253 59 46 chr3 139551761 139552067 -20047716 - MTD LTR MaLR 0 419 110 7 1649 1156 74 0 20 chr3 139552069 139552220 -20047563 + B1_Mus1 SINE Alu 1 148 0 7 1649 187 122 0 39 chr3 139552220 139552271 -20047512 + A-rich Low_complexity Low_complexity 1 49 0 7 1649 661 150 17 17 chr3 139552277 139552392 -20047391 - MTD LTR MaLR -299 120 6 7 1649 454 304 60 78 chr3 139554694 139554926 -20044857 + L3b LINE CR1 89 316 -166 7 1649 261 0 0 0 chr3 139560143 139560172 -20039611 + (TG)n Simple_repeat Simple_repeat 2 30 0 7 1649 374 306 66 53 chr3 139560193 139560345 -20039438 - B4A SINE B4 0 292 139 7 1649 25 31 0 0 chr3 139560494 139560526 -20039257 + AT_rich Low_complexity Low_complexity 1 32 0 7 1649 258 105 0 0 chr3 139562668 139562706 -20037077 + (CA)n Simple_repeat Simple_repeat 2 39 0 7 1649 26 0 0 0 chr3 139563106 139563132 -20036651 + AT_rich Low_complexity Low_complexity 1 26 0 7 1649 195 69 0 0 chr3 139563600 139563629 -20036154 + (TATG)n Simple_repeat Simple_repeat 2 30 0 8 1649 414 0 0 0 chr3 139563630 139563676 -20036107 + (TCTA)n Simple_repeat Simple_repeat 3 48 0 8 1649 561 180 15 119 chr3 139563682 139563884 -20035899 + Lx7 LINE L1 7516 7696 0 8 1649 239 288 55 0 chr3 139565360 139565433 -20034350 + MLT1C LTR MaLR 8 84 -383 8 1649 1655 203 70 16 chr3 139565530 139565813 -20033970 - MTD LTR MaLR -16 403 100 8 1649 4014 58 18 4 chr3 139565813 139566318 -20033465 + RLTR1B LTR ERV1 1 512 0 8 1649 1655 203 70 16 chr3 139566318 139566404 -20033379 - MTD LTR MaLR -320 99 14 8 1649 340 330 65 75 chr3 139566415 139566690 -20033093 - ORR1E LTR MaLR -87 283 9 8 1649 2579 198 95 23 chr3 139566709 139567414 -20032369 + RLTR25B LTR ERVK 7 762 -266 8 1649 878 186 3 220 chr3 139567834 139567914 -20031869 + RLTR25B LTR ERVK 759 818 -210 8 1649 2272 91 0 24 chr3 139567914 139568251 -20031532 + L1Md_F2 LINE L1 6252 6580 -2 8 1649 878 186 3 220 chr3 139568251 139568515 -20031268 + RLTR25B LTR ERVK 819 1028 0 8 1649 267 322 43 17 chr3 139568604 139568721 -20031062 + MLT1C LTR MaLR 340 459 -8 8 1649 513 0 0 0 chr3 139568795 139568852 -20030931 + (TC)n Simple_repeat Simple_repeat 2 58 0 9 1649 23 33 0 0 chr3 139570737 139570767 -20029016 + AT_rich Low_complexity Low_complexity 1 30 0 9 1649 477 199 34 34 chr3 139570781 139570958 -20028825 - Lx9 LINE L1 -10 7634 7458 9 1649 243 216 125 19 chr3 139570999 139571103 -20028680 - Lx9 LINE L1 -144 7500 7386 9 1649 272 348 11 52 chr3 139571355 139571568 -20028215 + RMER4B LTR ERVK 8 214 -371 9 1649 22 35 0 0 chr3 139571830 139571859 -20027924 + AT_rich Low_complexity Low_complexity 1 29 0 9 1649 1643 167 90 3 chr3 139571893 139572207 -20027576 - RMER4B LTR ERVK -212 373 43 9 1649 432 0 0 0 chr3 139572207 139572255 -20027528 + (TG)n Simple_repeat Simple_repeat 1 48 0 9 1649 1643 167 90 3 chr3 139572255 139572283 -20027500 - RMER4B LTR ERVK -543 42 2 9 1649 229 192 37 75 chr3 139573197 139573304 -20026479 + T-rich Low_complexity Low_complexity 3 105 0 9 1649 189 0 0 0 chr3 139573592 139573613 -20026170 + (TTA)n Simple_repeat Simple_repeat 2 22 0 9 1649 441 0 0 0 chr3 139573822 139573871 -20025912 + (TA)n Simple_repeat Simple_repeat 2 50 0 1 1649 358 254 137 31 chr3 139574212 139574410 -20025373 - LTR48B LTR ERV1 -419 368 122 1 1649 979 252 30 19 chr3 139574612 139574879 -20024904 - Lx6 LINE L1 -26 7434 7165 1 1649 619 187 220 0 chr3 139575486 139575636 -20024147 + URR1B DNA MER1_type 1 183 -42 1 1649 230 0 33 0 chr3 139575804 139575834 -20023949 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1 1649 208 143 0 0 chr3 139575952 139575987 -20023796 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 1 1649 188 111 28 0 chr3 139578631 139578667 -20021116 + (TTTTA)n Simple_repeat Simple_repeat 4 40 0 1 1649 507 281 96 46 chr3 139579195 139579395 -20020388 - MTD LTR MaLR -22 397 207 1 1649 1178 73 12 0 chr3 139579403 139579568 -20020215 + (TATATG)n Simple_repeat Simple_repeat 2 168 0 1 1649 408 99 0 0 chr3 139579576 139579647 -20020136 + (TA)n Simple_repeat Simple_repeat 1 71 0 1 1649 4176 126 42 21 chr3 139579660 139580398 -20019385 - RMER17A LTR ERVK -7 744 6 1 1649 360 0 0 0 chr3 139580398 139580438 -20019345 + (TA)n Simple_repeat Simple_repeat 2 41 0 1 1649 525 313 48 12 chr3 139580441 139580606 -20019177 - MTD LTR MaLR -231 188 18 1 1649 1065 279 98 6 chr3 139581448 139581784 -20017999 - MTE2b LTR MaLR -12 367 1 1 1649 254 369 62 62 chr3 139581784 139581962 -20017821 + MTE2b LTR MaLR 188 365 -14 1 1649 742 160 15 8 chr3 139582203 139582335 -20017448 + MT2A LTR ERVL 1 133 -400 1 1649 764 259 19 35 chr3 139582328 139582626 -20017157 + MT2A LTR ERVL 92 542 -59 1 1649 283 263 32 63 chr3 139582778 139582825 -20016958 + Lx9 LINE L1 7227 7275 -369 1 1649 1915 178 101 30 chr3 139582825 139583318 -20016465 + RLTR11A LTR ERVK 1 528 0 1 1649 283 263 32 63 chr3 139583318 139583360 -20016423 + Lx9 LINE L1 7276 7312 -332 1 1649 243 0 0 0 chr3 139583360 139583387 -20016396 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 1649 283 263 32 63 chr3 139583387 139583422 -20016361 + Lx9 LINE L1 7313 7348 -296 1 1649 1974 102 0 0 chr3 139583541 139583824 -20015959 - Lx LINE L1 -6 6648 6366 1 1649 559 104 19 0 chr3 139583934 139584040 -20015743 + (TTTC)n Simple_repeat Simple_repeat 2 109 0 1 1649 237 362 78 0 chr3 139584120 139584236 -20015547 + MLT1G1 LTR MaLR 13 137 -442 1 1649 264 304 25 0 chr3 139584492 139584571 -20015212 + MLT1G1 LTR MaLR 457 537 -42 1 1649 22 35 0 0 chr3 139585611 139585640 -20014143 + AT_rich Low_complexity Low_complexity 1 29 0 1 1649 259 276 25 38 chr3 139585743 139585822 -20013961 + ID4 SINE ID 3 80 -3 1 1649 486 0 0 0 chr3 139586532 139586586 -20013197 + (CA)n Simple_repeat Simple_repeat 2 55 0 1 1649 878 28 9 0 chr3 139586598 139586707 -20013076 + (GA)n Simple_repeat Simple_repeat 2 111 0 1 1649 2671 35 9 0 chr3 139587142 139587482 -20012301 - RLTR13C2 LTR ERVK -41 767 425 1 1649 193 250 18 55 chr3 139587578 139587633 -20012150 - MIRm SINE MIR -197 79 27 1 1649 3401 67 8 180 chr3 139589237 139589855 -20009928 + RLTR1B LTR ERV1 1 512 0 1 1649 1197 154 102 82 chr3 139589856 139590301 -20009482 + RLTR1B-int LTR ERV1 2 378 -7178 1 1649 1411 155 118 106 chr3 139590272 139590677 -20009106 + RLTR1B-int LTR ERV1 264 673 -2626 1 206 7673 128 58 46 chr3 139590730 139592815 -20006968 + RLTR1B-int LTR ERV1 1557 3299 0 1 1650 2581 46 3 3 chr3 139592815 139593141 -20006642 + RLTR1B LTR ERV1 1 326 -186 1 1650 343 291 83 83 chr3 139593132 139593162 -20006621 + RLTR1B LTR ERV1 359 388 -199 1 1650 518 130 17 25 chr3 139593162 139593280 -20006503 - L1Md_F2 LINE L1 0 6582 6466 1 1650 1366 96 23 13 chr3 139593280 139593478 -20006305 + RLTR1B LTR ERV1 319 587 0 1 1650 36 40 0 0 chr3 139593720 139593770 -20006013 + AT_rich Low_complexity Low_complexity 1 50 0 1 1650 200 326 85 8 chr3 139593855 139593985 -20005798 - MIR SINE MIR -66 196 57 1 1650 222 357 60 43 chr3 139594048 139594282 -20005501 - L2 LINE L2 -1271 2148 1911 1 1650 3643 81 87 17 chr3 139594314 139594841 -20004942 + LTRIS2 LTR ERV1 1 564 0 1 1650 471 399 75 15 chr3 139596057 139596513 -20003270 - MLT1F2 LTR MaLR -61 499 17 1 1650 367 327 26 26 chr3 139596963 139597117 -20002666 - RSINE1 SINE B4 -10 155 2 1 1650 312 34 0 92 chr3 139597123 139597188 -20002595 + (CAAAAA)n Simple_repeat Simple_repeat 2 60 0 1 1650 441 0 0 0 chr3 139597649 139597698 -20002085 + (TA)n Simple_repeat Simple_repeat 1 49 0 1 1650 464 359 111 30 chr3 139598895 139599291 -20000492 + L1MD3 LINE L1 4705 5132 -1014 1 1650 291 305 198 19 chr3 139599683 139599840 -19999943 - RMER15 LTR ERVL -90 485 301 1 1650 349 347 54 18 chr3 139600193 139600416 -19999367 + L1MD3 LINE L1 5774 6004 -1991 1 1650 270 0 0 0 chr3 139600887 139600917 -19998866 + (TG)n Simple_repeat Simple_repeat 2 31 0 1 1650 435 19 0 0 chr3 139601369 139601421 -19998362 + (CA)n Simple_repeat Simple_repeat 2 53 0 1 1650 279 0 0 0 chr3 139601638 139601669 -19998114 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 1 1650 551 297 0 108 chr3 139601710 139601876 -19997907 - RSINE1 SINE B4 0 165 18 1 1650 558 124 124 0 chr3 139605091 139605180 -19994603 - Lx2 LINE L1 -658 6339 6240 1 1650 4263 137 3 8 chr3 139605180 139605850 -19993933 + Lx2 LINE L1 6324 6990 -7 1 1650 22 0 0 0 chr3 139605850 139605872 -19993911 + AT_rich Low_complexity Low_complexity 1 22 0 1 1650 247 364 7 36 chr3 139606523 139606660 -19993123 + MER57F LTR ERV1 15 147 -289 1 1650 295 141 31 0 chr3 139606768 139606832 -19992951 + (TA)n Simple_repeat Simple_repeat 2 67 0 1 1650 830 90 8 0 chr3 139606863 139606997 -19992786 + (TCTA)n Simple_repeat Simple_repeat 2 136 0 1 1650 855 273 62 33 chr3 139607508 139607928 -19991855 + LTR48B LTR ERV1 122 747 -40 1 1650 369 0 0 0 chr3 139608590 139608631 -19991152 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 1650 972 119 0 0 chr3 139608631 139608807 -19990976 + (GA)n Simple_repeat Simple_repeat 2 178 0 1 1650 198 0 0 0 chr3 139608807 139608829 -19990954 + (CAGA)n Simple_repeat Simple_repeat 1 22 0 1 1650 2011 177 60 23 chr3 139608870 139609268 -19990515 - MTC LTR MaLR -4 417 5 1 1650 2296 282 69 54 chr3 139609288 139609626 -19990157 - Lx9 LINE L1 -1530 6114 5745 1 1650 1535 157 188 3 chr3 139609626 139609814 -19989969 - ORR1C1 LTR MaLR 0 378 167 1 1650 873 76 0 0 chr3 139609814 139609932 -19989851 + (GA)n Simple_repeat Simple_repeat 1 118 0 1 1650 1535 157 188 3 chr3 139609932 139610062 -19989721 - ORR1C1 LTR MaLR -212 166 2 1 1650 2296 244 110 44 chr3 139610062 139610881 -19988902 - Lx9 LINE L1 -103 5744 4858 1 1650 942 9 0 0 chr3 139610909 139611016 -19988767 + (GA)n Simple_repeat Simple_repeat 1 107 0 1 1650 1234 283 91 21 chr3 139611064 139612016 -19987767 + Lx9 LINE L1 6347 7464 -180 1 1650 26 30 0 0 chr3 139614146 139614179 -19985604 + AT_rich Low_complexity Low_complexity 1 33 0 1 1650 804 270 139 21 chr3 139615792 139616123 -19983660 + ORR1D2 LTR MaLR 3 370 -4 1 1650 353 346 70 95 chr3 139618023 139618307 -19981476 - MLT1F2 LTR MaLR -27 533 257 1 1650 372 94 0 0 chr3 139619337 139619390 -19980393 + (T)n Simple_repeat Simple_repeat 1 53 0 1 1650 28 0 0 0 chr3 139619814 139619842 -19979941 + AT_rich Low_complexity Low_complexity 1 28 0 1 1650 699 268 9 42 chr3 139620092 139620306 -19979477 - B3 SINE B2 -9 207 1 1 1650 38 22 0 0 chr3 139620931 139620976 -19978807 + AT_rich Low_complexity Low_complexity 1 45 0 1 1650 183 156 0 0 chr3 139621383 139621415 -19978368 + (TG)n Simple_repeat Simple_repeat 2 33 0 1 1650 258 32 0 0 chr3 139622020 139622051 -19977732 + (TTG)n Simple_repeat Simple_repeat 3 33 0 1 1650 23 0 0 71 chr3 139622345 139622387 -19977396 + AT_rich Low_complexity Low_complexity 1 39 0 1 1650 727 330 89 9 chr3 139622622 139622970 -19976813 + MLT2B1 LTR ERVL 5 380 -140 1 1650 217 25 0 91 chr3 139623094 139623138 -19976645 + (CAGAGA)n Simple_repeat Simple_repeat 2 41 0 1 1650 8888 84 32 22 chr3 139624030 139625316 -19974467 - Lx3_Mus LINE L1 0 7009 5711 1 1650 841 330 63 73 chr3 139625349 139625765 -19974018 + MTE2a LTR MaLR 1 405 -14 1 1650 192 125 0 0 chr3 139627755 139627787 -19971996 + (GGAGAA)n Simple_repeat Simple_repeat 4 35 0 1 1650 1788 211 40 0 chr3 139628301 139628652 -19971131 - ORR1B2 LTR MaLR 0 367 3 1 1650 396 329 13 57 chr3 139629483 139629641 -19970142 + 7SLRNA srpRNA srpRNA 9 159 -155 1 1650 42 71 0 0 chr3 139629992 139630076 -19969707 + AT_rich Low_complexity Low_complexity 1 84 0 1 1650 381 43 0 0 chr3 139630640 139630687 -19969096 + (TA)n Simple_repeat Simple_repeat 1 47 0 1 1650 528 186 80 0 chr3 139630727 139630840 -19968943 - MER57A-int LTR ERV1 -267 5920 5799 1 1650 22 94 0 0 chr3 139630935 139630999 -19968784 + AT_rich Low_complexity Low_complexity 1 64 0 1 1650 462 266 155 16 chr3 139630999 139631186 -19968597 - B3 SINE B2 -3 213 1 1 1650 1026 149 124 5 chr3 139631359 139631561 -19968222 + URR1A DNA MER1_type 1 226 0 1 1650 342 300 90 30 chr3 139632070 139632204 -19967579 + B4A SINE B4 91 232 -60 1 1650 548 308 63 13 chr3 139632291 139632528 -19967255 - MER34A1 LTR ERV1 -335 252 4 1 1650 765 142 0 0 chr3 139632802 139632929 -19966854 + (TA)n Simple_repeat Simple_repeat 1 127 0 1 1650 302 288 99 48 chr3 139634734 139634873 -19964910 + Lx9 LINE L1 7365 7515 -129 1 1650 306 0 0 0 chr3 139634873 139634907 -19964876 + (CA)n Simple_repeat Simple_repeat 2 35 0 1 1650 302 288 99 48 chr3 139634907 139635019 -19964764 + Lx9 LINE L1 7516 7629 -15 1 1650 4528 31 17 0 chr3 139635096 139635638 -19964145 + L1Md_F2 LINE L1 6024 6574 -8 1 1650 465 258 24 50 chr3 139636182 139636337 -19963446 + ORR1E LTR MaLR 211 419 -2 1 1650 1879 311 36 55 chr3 139636337 139637134 -19962649 + ORR1E-int LTR MaLR 2 783 -587 1 1650 21 0 0 0 chr3 139637174 139637195 -19962588 + AT_rich Low_complexity Low_complexity 1 21 0 1 1650 331 0 0 0 chr3 139637542 139637581 -19962202 + IAPLTR4 LTR ERVK 1 39 -306 1 1650 3302 73 0 0 chr3 139637582 139637990 -19961793 + IAPLTR3-int LTR ERVK 6394 6801 -20 1 1650 1389 161 126 13 chr3 139637990 139638292 -19961491 + IAPLTR4 LTR ERVK 1 465 -10 1 1650 584 348 9 33 chr3 139638318 139638532 -19961251 + ORR1E-int LTR MaLR 879 1087 -493 1 1650 367 268 18 18 chr3 139638686 139638800 -19960983 + Lx8 LINE L1 6770 6883 -590 1 1650 631 322 79 20 chr3 139638948 139639240 -19960543 + Lx8 LINE L1 7144 7452 -21 1 1650 24 85 0 0 chr3 139639339 139639398 -19960385 + AT_rich Low_complexity Low_complexity 1 59 0 1 1650 232 366 52 30 chr3 139640236 139640371 -19959412 + MLT1L LTR MaLR 417 554 -56 1 1650 2009 24 12 12 chr3 139640680 139640930 -19958853 + L1Md_F3 LINE L1 6333 6582 -2 1 1650 643 270 45 52 chr3 139640938 139641247 -19958536 + RLTR15 LTR ERVK 49 355 -4 1 1650 827 320 25 18 chr3 139641290 139641573 -19958210 + B4 SINE B4 3 287 -5 1 1650 423 0 0 0 chr3 139641606 139641653 -19958130 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 1650 1926 138 21 56 chr3 139641654 139641992 -19957791 + ORR1A3 LTR MaLR 1 326 0 1 1650 269 295 9 0 chr3 139641992 139642104 -19957679 + (CA)n Simple_repeat Simple_repeat 1 113 0 2 1650 252 170 0 0 chr3 139642125 139642178 -19957605 + (CA)n Simple_repeat Simple_repeat 2 54 0 2 1650 342 0 0 0 chr3 139643661 139643699 -19956084 + (TG)n Simple_repeat Simple_repeat 1 38 0 2 1650 630 0 0 0 chr3 139643699 139643768 -19956015 + (GA)n Simple_repeat Simple_repeat 1 70 0 2 1650 930 330 63 35 chr3 139643829 139644318 -19955465 - Lx9 LINE L1 -229 7415 6913 2 1650 306 0 0 0 chr3 139644504 139644538 -19955245 + (TG)n Simple_repeat Simple_repeat 2 35 0 2 1650 206 225 0 0 chr3 139644677 139644717 -19955066 + GA-rich Low_complexity Low_complexity 5 44 0 2 1650 552 280 7 20 chr3 139644724 139644888 -19954895 - ORR1C2 LTR MaLR 0 384 171 2 1650 3301 133 6 2 chr3 139646058 139646571 -19953212 + Lx2 LINE L1 5599 6113 -884 2 1650 189 0 0 0 chr3 139646582 139646603 -19953180 + (TGGG)n Simple_repeat Simple_repeat 1 21 0 2 1650 552 165 0 9 chr3 139646603 139646713 -19953070 + Lx2 LINE L1 6883 6991 -9 2 1650 197 33 33 0 chr3 139646719 139646749 -19953034 + (CAA)n Simple_repeat Simple_repeat 1 31 0 2 1650 1800 213 8 51 chr3 139647256 139647651 -19952132 + ORR1C1 LTR MaLR 1 378 0 2 1650 21 36 0 0 chr3 139649447 139649475 -19950308 + AT_rich Low_complexity Low_complexity 1 28 0 2 1650 26 74 0 0 chr3 139651624 139651678 -19948105 + AT_rich Low_complexity Low_complexity 1 54 0 2 1650 379 364 98 23 chr3 139651689 139652086 -19947697 + L1MDa LINE L1 16 442 -6191 2 1650 492 300 146 45 chr3 139652314 139652684 -19947099 + L1MDa LINE L1 1033 1436 -5197 2 1650 505 318 95 74 chr3 139652699 139652984 -19946799 + B4A SINE B4 2 292 0 2 1650 280 258 0 30 chr3 139652988 139653088 -19946695 + (CATATA)n Simple_repeat Simple_repeat 5 101 0 2 1650 300 254 0 0 chr3 139653104 139653238 -19946545 + (CA)n Simple_repeat Simple_repeat 1 134 0 2 1650 24 53 0 0 chr3 139653359 139653397 -19946386 + AT_rich Low_complexity Low_complexity 1 38 0 2 1650 364 311 83 18 chr3 139653460 139653689 -19946094 + L1MDa LINE L1 1520 1763 -4870 2 1650 236 403 40 8 chr3 139654090 139654215 -19945568 - MER5A DNA MER1_type 0 189 61 2 1650 1177 329 41 22 chr3 139654358 139654914 -19944869 - Lx8 LINE L1 -92 7381 6815 2 1650 279 243 67 73 chr3 139655129 139655293 -19944490 + L1MDa LINE L1 2084 2246 -4387 2 1650 227 330 9 19 chr3 139655386 139655491 -19944292 + L1MD2 LINE L1 6202 6305 -54 2 1650 23 78 0 0 chr3 139657099 139657150 -19942633 + AT_rich Low_complexity Low_complexity 1 51 0 2 1650 259 341 36 77 chr3 139657313 139657561 -19942222 + MER112 DNA MER1_type 2 239 -22 2 1650 243 323 29 86 chr3 139658277 139658416 -19941367 + MLT1E2 LTR MaLR 333 463 -164 2 1650 1159 74 0 0 chr3 139658418 139658566 -19941217 + B1_Mus1 SINE Alu 1 148 0 2 1650 306 98 0 0 chr3 139658568 139658619 -19941164 + (TAGA)n Simple_repeat Simple_repeat 4 54 0 2 1650 196 127 52 52 chr3 139658633 139658749 -19941034 + A-rich Low_complexity Low_complexity 2 117 0 2 1650 2743 156 34 4 chr3 139659843 139660346 -19939437 - L1_Mur2 LINE L1 -530 5347 4830 2 1650 2763 219 83 19 chr3 139660350 139661051 -19938732 + Lx2B LINE L1 6254 6999 -1 2 1650 28 0 0 0 chr3 139662878 139662906 -19936877 + AT_rich Low_complexity Low_complexity 1 28 0 2 1650 804 100 0 0 chr3 139663287 139663407 -19936376 + (TCC)n Simple_repeat Simple_repeat 3 122 0 2 1650 339 319 73 89 chr3 139663782 139664030 -19935753 - MER21B LTR ERV1 -150 713 470 2 1650 3517 104 0 21 chr3 139664903 139665195 -19934588 + Lx2 LINE L1 6144 6432 -565 2 1650 2561 108 77 3 chr3 139665195 139665382 -19934401 + BGLII_Mus LTR ERVK 3 218 -204 2 1650 393 22 0 0 chr3 139665382 139665428 -19934355 + (GA)n Simple_repeat Simple_repeat 1 46 0 2 1650 2561 108 77 3 chr3 139665428 139665631 -19934152 + BGLII_Mus LTR ERVK 219 422 0 2 1650 3517 104 0 21 chr3 139665631 139665851 -19933932 + Lx2 LINE L1 6433 6645 -352 2 1650 1218 110 41 99 chr3 139665846 139666088 -19933695 + Lx2 LINE L1 6770 6997 0 2 1650 336 332 91 67 chr3 139667062 139667272 -19932511 + LTR33 LTR ERVL 248 462 -53 2 1650 373 191 11 35 chr3 139668229 139668316 -19931467 - MTEb LTR MaLR 0 379 295 2 1650 395 212 29 29 chr3 139668746 139668921 -19930862 + (TTATA)n Simple_repeat Simple_repeat 5 179 0 2 1650 288 313 271 10 chr3 139670576 139670779 -19929004 + MTEb LTR MaLR 6 261 -118 2 1650 553 286 11 48 chr3 139670783 139670970 -19928813 - MLT1B LTR MaLR -44 346 167 2 1650 23 0 0 0 chr3 139671258 139671281 -19928502 + AT_rich Low_complexity Low_complexity 1 23 0 2 1650 3975 95 45 5 chr3 139672366 139672960 -19926823 - L1_Mus4 LINE L1 -12 6624 6007 2 1650 2409 78 22 0 chr3 139672961 139673316 -19926467 + L1_Mus4 LINE L1 5554 5915 -721 2 1650 334 333 38 57 chr3 139673317 139673527 -19926256 + MLT1C LTR MaLR 262 467 0 2 1650 847 215 41 112 chr3 139674075 139674264 -19925519 + RMER1C Other Other 1038 1210 -132 2 1650 539 29 14 0 chr3 139674264 139674333 -19925450 + (TTCC)n Simple_repeat Simple_repeat 1 70 0 2 1650 847 215 41 112 chr3 139674333 139674463 -19925320 + RMER1C Other Other 1211 1334 -8 2 1650 876 300 30 61 chr3 139674590 139674920 -19924863 + MTE2b LTR MaLR 58 377 -2 2 1650 770 282 54 0 chr3 139675033 139675256 -19924527 + Lx8 LINE L1 6884 7118 -355 2 1650 2611 97 13 3 chr3 139678594 139678976 -19920807 + L1_Mus3 LINE L1 6247 6632 -6 2 1650 441 0 0 0 chr3 139680433 139680482 -19919301 + (TC)n Simple_repeat Simple_repeat 2 50 0 2 1650 450 0 0 0 chr3 139680482 139680531 -19919252 + (TG)n Simple_repeat Simple_repeat 1 50 0 2 1650 21 57 0 0 chr3 139680884 139680919 -19918864 + AT_rich Low_complexity Low_complexity 1 35 0 2 1650 338 71 54 0 chr3 139682090 139682146 -19917637 + (TATATG)n Simple_repeat Simple_repeat 6 64 0 2 1650 233 228 17 17 chr3 139682210 139682268 -19917515 + ORR1A4-int LTR MaLR 1906 1963 0 2 1650 2025 116 3 83 chr3 139682268 139682617 -19917166 + ORR1A4 LTR MaLR 1 321 -8 2 1650 2818 39 0 3 chr3 139682901 139683239 -19916544 + IAPLTR1a_Mm LTR ERVK 1 337 0 2 1650 55556 22 15 6 chr3 139683239 139689658 -19910125 + IAPEz-int LTR ERVK 8 6481 0 2 1650 2848 36 0 3 chr3 139689658 139689996 -19909787 + IAPLTR1a_Mm LTR ERVK 1 337 0 2 1650 21 0 0 0 chr3 139690137 139690158 -19909625 + AT_rich Low_complexity Low_complexity 1 21 0 2 1650 885 276 193 5 chr3 139690395 139690777 -19909006 - MT2A LTR ERVL -78 455 2 2 1650 22 0 0 0 chr3 139691912 139691934 -19907849 + AT_rich Low_complexity Low_complexity 1 22 0 2 1650 407 279 114 77 chr3 139692884 139693183 -19906600 - L1M5 LINE L1 -842 5304 4995 2 1650 281 308 9 19 chr3 139693354 139693460 -19906323 + L1M5 LINE L1 5523 5627 -546 2 1650 381 294 25 0 chr3 139693848 139694011 -19905772 + (CATATA)n Simple_repeat Simple_repeat 1 167 0 2 1650 669 321 37 66 chr3 139694304 139694654 -19905129 - MTEb LTR MaLR -39 340 1 2 1650 887 254 99 4 chr3 139694722 139694955 -19904828 + MTD LTR MaLR 144 398 -21 2 1650 386 264 7 26 chr3 139695032 139695185 -19904598 + L1_Mur2 LINE L1 2087 2251 -3596 2 1650 21 57 0 0 chr3 139695643 139695678 -19904105 + AT_rich Low_complexity Low_complexity 1 35 0 2 1650 230 212 75 0 chr3 139695779 139695859 -19903924 + L1M2 LINE L1 2745 2830 -3313 2 1650 1667 202 107 7 chr3 139695970 139696513 -19903270 - L1_Mur3 LINE L1 -3908 1972 1376 2 1650 869 298 52 130 chr3 139697188 139697589 -19902194 + ORR1D2 LTR MaLR 1 370 0 2 1650 6670 115 44 15 chr3 139700320 139701583 -19898200 - Lx LINE L1 -5 6649 5360 2 1650 2240 179 70 65 chr3 139701609 139702148 -19897635 - Lx2B LINE L1 -5 6995 6454 2 1650 3341 176 7 92 chr3 139702181 139702956 -19896827 - L1_Mur2 LINE L1 -521 5356 4648 2 1650 1534 203 43 19 chr3 139703135 139703457 -19896326 - Lx5 LINE L1 -208 6842 6513 2 1650 540 81 0 0 chr3 139703593 139703667 -19896116 + (GA)n Simple_repeat Simple_repeat 1 74 0 2 1650 376 60 0 0 chr3 139703811 139703866 -19895917 - Lx4B LINE L1 -370 6688 6616 2 1650 510 210 0 0 chr3 139705144 139705263 -19894520 + (TA)n Simple_repeat Simple_repeat 1 119 0 2 1650 6723 114 25 0 chr3 139706008 139706978 -19892805 + Lx LINE L1 5655 6648 -6 2 1650 246 226 0 0 chr3 139707087 139707140 -19892643 + GA-rich Low_complexity Low_complexity 4 56 0 2 1650 291 28 0 0 chr3 139707157 139707193 -19892590 + (TG)n Simple_repeat Simple_repeat 1 36 0 2 1650 186 43 0 0 chr3 139707653 139707676 -19892107 + (T)n Simple_repeat Simple_repeat 1 23 0 2 1650 203 325 104 95 chr3 139707833 139708054 -19891729 - L2c LINE L2 -48 3339 3117 2 1650 25 0 0 0 chr3 139710389 139710414 -19889369 + AT_rich Low_complexity Low_complexity 1 25 0 2 1650 755 275 64 32 chr3 139710825 139711107 -19888676 - B4A SINE B4 0 292 2 2 1650 248 0 31 0 chr3 139711176 139711208 -19888575 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 2 1650 1121 82 7 0 chr3 139711218 139711365 -19888418 - B1_Mus1 SINE Alu 0 148 1 2 1650 543 284 81 59 chr3 139711485 139711595 -19888188 - MER2 DNA MER2_type -31 314 195 2 1650 1885 165 3 60 chr3 139711595 139711944 -19887839 - ORR1A4 LTR MaLR 0 329 1 2 1650 543 284 81 59 chr3 139711944 139712069 -19887714 - MER2 DNA MER2_type -151 194 74 2 1650 378 57 0 0 chr3 139712299 139712352 -19887431 + (TG)n Simple_repeat Simple_repeat 2 54 0 2 1650 2051 203 39 183 chr3 139715289 139716000 -19883783 - RMER19C LTR ERVK -2 609 1 2 1650 1244 94 39 0 chr3 139717260 139717440 -19882343 + B2_Mm2 SINE B2 2 188 -7 2 1650 471 18 0 0 chr3 139717454 139717510 -19882273 + (CA)n Simple_repeat Simple_repeat 1 56 0 2 1650 900 315 115 60 chr3 139717513 139718181 -19881602 - Tigger9a DNA Tigger -27 705 1 2 1650 630 26 0 0 chr3 139718284 139718360 -19881423 + (GA)n Simple_repeat Simple_repeat 1 76 0 2 1650 449 148 111 0 chr3 139718360 139718441 -19881342 - B1_Mur4 SINE Alu 0 150 61 2 1650 404 125 0 27 chr3 139719293 139719367 -19880416 + (TATG)n Simple_repeat Simple_repeat 4 75 0 2 1650 216 0 0 0 chr3 139720184 139720208 -19879575 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 2 1650 805 386 94 42 chr3 139720585 139721596 -19878187 - L4 LINE RTE -232 1797 734 2 1650 201 147 0 0 chr3 139722103 139722137 -19877646 + (T)n Simple_repeat Simple_repeat 1 34 0 2 1651 549 30 0 0 chr3 139723803 139723870 -19875913 + (TC)n Simple_repeat Simple_repeat 1 67 0 2 1651 390 248 105 0 chr3 139724139 139724244 -19875539 + Lx7 LINE L1 7199 7314 -382 2 1651 4079 169 51 63 chr3 139724252 139725220 -19874563 + RMER17B LTR ERVK 2 957 -1 2 1651 586 240 203 35 chr3 139725238 139725453 -19874330 + Lx7 LINE L1 7333 7570 -126 2 1651 1187 84 0 8 chr3 139725453 139725694 -19874089 + (GAAA)n Simple_repeat Simple_repeat 1 238 0 2 1651 586 240 203 35 chr3 139725694 139725787 -19873996 + Lx7 LINE L1 7571 7690 -6 2 1651 28 29 0 0 chr3 139726304 139726339 -19873444 + AT_rich Low_complexity Low_complexity 1 35 0 3 1651 197 244 0 0 chr3 139726877 139726922 -19872861 - L2a LINE L2 -14 3412 3368 3 1651 443 296 86 11 chr3 139727920 139728094 -19871689 + MLT2B2 LTR ERVL 1 187 -328 3 1651 1473 134 0 13 chr3 139728098 139728325 -19871458 - Lx2 LINE L1 -75 6922 6699 3 1651 234 213 0 0 chr3 139728322 139728369 -19871414 + Lx2B LINE L1 6629 6675 -325 3 1651 315 0 0 0 chr3 139729473 139729508 -19870275 + (TCCCC)n Simple_repeat Simple_repeat 2 36 0 3 1651 1230 160 0 109 chr3 139730178 139730444 -19869339 - ORR1B1 LTR MaLR 0 394 93 3 1651 3477 29 0 2 chr3 139730445 139730856 -19868927 + L1Md_F2 LINE L1 5177 5586 -297 3 1651 7965 45 2 18 chr3 139730856 139731868 -19867915 + L1Md_F2 LINE L1 5587 6582 0 3 1651 500 215 23 83 chr3 139731903 139732035 -19867748 - ORR1B1 LTR MaLR -241 153 30 3 1651 275 322 73 7 chr3 139732098 139732248 -19867535 + HAL1 LINE L1 757 916 -1591 3 1651 537 328 77 54 chr3 139732555 139732868 -19866915 + MLT1B LTR MaLR 7 326 -64 3 1651 1512 235 94 11 chr3 139732869 139733304 -19866479 + Lx9 LINE L1 6947 7417 -227 3 1651 241 246 51 123 chr3 139733635 139733830 -19865953 + L1MC4a LINE L1 6292 6472 -1410 3 1651 244 259 157 74 chr3 139733976 139734193 -19865590 + L1MC4a LINE L1 6684 6918 -1124 3 1651 995 299 94 38 chr3 139734235 139734822 -19864961 + L1MC4a LINE L1 7012 7631 -251 3 1651 5690 78 4 5 chr3 139734977 139735740 -19864043 + L1Md_F2 LINE L1 5809 6570 -12 3 1651 7898 176 12 11 chr3 139735762 139737593 -19862190 + Lx2B LINE L1 5164 6995 -5 3 1651 28 0 0 0 chr3 139738304 139738332 -19861451 + AT_rich Low_complexity Low_complexity 1 28 0 3 1651 278 363 32 38 chr3 139738531 139738717 -19861066 - Lx8 LINE L1 -162 7311 7127 3 1651 666 283 45 45 chr3 139739311 139739511 -19860272 + B3 SINE B2 8 207 -9 3 1651 21 0 0 0 chr3 139740221 139740242 -19859541 + AT_rich Low_complexity Low_complexity 1 21 0 3 1651 987 254 22 58 chr3 139740559 139740919 -19858864 - Lx9 LINE L1 -27 7617 7271 3 1651 925 267 86 20 chr3 139740897 139741306 -19858477 + Lx9 LINE L1 5669 6104 -1540 3 1651 723 54 0 0 chr3 139741668 139741760 -19858023 + (TC)n Simple_repeat Simple_repeat 2 93 0 3 1651 27 29 0 0 chr3 139743345 139743379 -19856404 + AT_rich Low_complexity Low_complexity 1 34 0 3 1651 34 0 0 0 chr3 139743528 139743562 -19856221 + AT_rich Low_complexity Low_complexity 1 34 0 3 1651 342 0 0 0 chr3 139747143 139747181 -19852602 + (TA)n Simple_repeat Simple_repeat 1 38 0 3 1651 27 29 0 0 chr3 139748153 139748187 -19851596 + AT_rich Low_complexity Low_complexity 1 34 0 3 1651 943 278 172 6 chr3 139749304 139749623 -19850160 + MTEa LTR MaLR 7 378 -1 3 1651 700 293 151 58 chr3 139749779 139750102 -19849681 + MT2A LTR ERVL 208 577 -24 3 1651 21 0 0 0 chr3 139750126 139750147 -19849636 + AT_rich Low_complexity Low_complexity 1 21 0 3 1651 500 16 31 0 chr3 139751310 139751374 -19848409 + (GAAA)n Simple_repeat Simple_repeat 3 68 0 3 1651 214 138 17 17 chr3 139753965 139754024 -19845759 + A-rich Low_complexity Low_complexity 2 60 0 3 1651 2175 366 91 33 chr3 139754137 139755533 -19844250 + ORR1E-int LTR MaLR 50 1527 -53 3 1651 297 291 129 10 chr3 139755533 139755663 -19844120 + ORR1E LTR MaLR 1 141 -229 3 1651 1179 194 109 36 chr3 139755713 139756059 -19843724 + ORR1C2 LTR MaLR 24 384 0 3 1651 21 0 0 0 chr3 139757078 139757099 -19842684 + AT_rich Low_complexity Low_complexity 1 21 0 3 1651 1438 274 99 76 chr3 139757842 139758072 -19841711 + RMER15 LTR ERVL 27 230 -345 3 1651 631 65 21 0 chr3 139758072 139758165 -19841618 + (GA)n Simple_repeat Simple_repeat 2 96 0 3 1651 1438 274 99 76 chr3 139758165 139758471 -19841312 + RMER15 LTR ERVL 231 575 0 3 1651 874 274 65 52 chr3 139758648 139759095 -19840688 + L1_Rod LINE L1 467 919 -6253 3 1651 1164 97 18 0 chr3 139759931 139760096 -19839687 - B2_Mm2 SINE B2 -23 172 5 3 1651 319 290 68 7 chr3 139760558 139760704 -19839079 - L1M4 LINE L1 -692 5482 5328 3 1651 265 229 11 57 chr3 139761007 139761095 -19838688 + (TATG)n Simple_repeat Simple_repeat 1 84 0 3 1651 761 275 119 8 chr3 139761520 139761773 -19838010 + RMER15 LTR ERVL 286 566 -9 3 1651 518 79 0 13 chr3 139761797 139761874 -19837909 + (TC)n Simple_repeat Simple_repeat 2 77 0 3 1651 468 77 0 0 chr3 139761875 139761940 -19837843 + (CA)n Simple_repeat Simple_repeat 2 66 0 3 1651 392 0 21 0 chr3 139762034 139762082 -19837701 + (TG)n Simple_repeat Simple_repeat 2 50 0 3 1651 407 309 83 24 chr3 139762201 139762737 -19837046 - L1M4 LINE L1 -1149 4997 4420 3 1651 1934 152 17 27 chr3 139763151 139763544 -19836239 - Lx4A LINE L1 -2 7056 6617 3 1651 254 340 29 20 chr3 139763608 139763812 -19835971 - L1M4 LINE L1 -2400 3740 3535 3 1651 294 29 0 0 chr3 139766538 139766573 -19833210 + (CA)n Simple_repeat Simple_repeat 2 36 0 3 1651 372 335 39 6 chr3 139768472 139768628 -19831155 + MLT1A0 LTR MaLR 1 161 -204 3 1651 536 335 47 23 chr3 139769032 139769246 -19830537 + RCHARR1 DNA MER1_type 9 227 -747 3 1651 423 269 11 11 chr3 139769260 139769354 -19830429 + RSINE1 SINE B4 11 104 -61 3 1651 3875 164 2 0 chr3 139769568 139770201 -19829582 - L1_Mm LINE L1 -209 5674 5041 3 1651 6813 105 28 5 chr3 139770176 139771162 -19828621 + L1_Mus4 LINE L1 5622 6630 -6 3 1651 854 217 32 118 chr3 139771315 139771651 -19828132 + Lx7 LINE L1 7136 7661 -35 3 1651 237 377 78 16 chr3 139771814 139772057 -19827726 + L1M4b LINE L1 361 618 -6716 3 1651 689 311 165 28 chr3 139772181 139772974 -19826809 + L1M4b LINE L1 848 1749 -5585 3 1651 504 0 0 0 chr3 139773431 139773487 -19826296 + (CA)n Simple_repeat Simple_repeat 2 57 0 3 1651 494 316 68 148 chr3 139774930 139775330 -19824453 + ORR1E LTR MaLR 3 370 0 3 1651 249 33 0 0 chr3 139775338 139775368 -19824415 + (GAAA)n Simple_repeat Simple_repeat 2 31 0 3 1651 313 298 18 90 chr3 139775368 139775534 -19824249 + L1M4b LINE L1 1931 2084 -5109 3 1651 7242 91 31 8 chr3 139775709 139776734 -19823049 - L1_Mus3 LINE L1 -3 6635 5587 3 1651 1278 152 5 5 chr3 139776747 139776971 -19822812 + L1_Mur2 LINE L1 5069 5292 -585 3 1651 618 76 0 0 chr3 139776971 139777050 -19822733 + L1_Mur2 LINE L1 5496 5574 -312 3 1651 788 229 0 0 chr3 139777050 139777194 -19822589 + B1_Mur2 SINE Alu 5 148 -1 3 1651 362 320 60 38 chr3 139777318 139777451 -19822332 + B1F SINE Alu 9 144 -5 3 1651 222 37 0 0 chr3 139777459 139777486 -19822297 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3 1651 2565 62 69 23 chr3 139777588 139777935 -19821848 - L1_Mus2 LINE L1 0 6566 6204 3 1651 841 250 86 45 chr3 139777976 139778028 -19821755 - MTD LTR MaLR -149 270 221 3 1651 403 280 103 135 chr3 139778028 139778407 -19821376 - RLTR9A LTR ERVK 0 368 2 3 1651 841 250 86 45 chr3 139778407 139778597 -19821186 - MTD LTR MaLR -199 220 18 3 1651 6101 38 9 1 chr3 139781069 139781764 -19818019 - L1Md_F2 LINE L1 0 6582 5883 3 1651 2519 69 57 20 chr3 139782973 139783327 -19816456 + IAPLTR1_Mm LTR ERVK 1 367 0 3 1651 8197 83 56 54 chr3 139783327 139784631 -19815152 + IAPEz-int LTR ERVK 8 1313 -5168 3 1651 29507 19 1 1 chr3 139784630 139787902 -19811881 + IAPEz-int LTR ERVK 3210 6479 -2 3 1651 2519 69 57 20 chr3 139787904 139788258 -19811525 + IAPLTR1_Mm LTR ERVK 1 367 0 3 1651 653 370 3 7 chr3 139788559 139788858 -19810925 + Lx8 LINE L1 6315 6612 -861 3 1651 1496 344 45 16 chr3 139788903 139789634 -19810149 + Lx8 LINE L1 6722 7473 0 3 1651 1190 47 24 0 chr3 139790961 139791131 -19808652 + (TCTA)n Simple_repeat Simple_repeat 4 177 0 3 1651 297 284 30 59 chr3 139791182 139791283 -19808500 - RSINE1 SINE B4 0 165 68 3 1651 3542 154 87 0 chr3 139792804 139793357 -19806426 - MT2B LTR ERVL 0 601 1 3 1651 278 274 45 61 chr3 139793528 139793660 -19806123 - MURVY-LTR LTR ERV1 -47 472 343 3 1651 556 300 77 47 chr3 139794231 139794622 -19805161 - MLT1C LTR MaLR 0 390 1 3 1651 25 0 0 0 chr3 139795063 139795088 -19804695 + AT_rich Low_complexity Low_complexity 1 25 0 3 1651 328 242 93 8 chr3 139795580 139795709 -19804074 - Tigger5 DNA MER2_type -127 2279 2140 3 1651 1206 58 0 0 chr3 139795813 139795968 -19803815 + (GA)n Simple_repeat Simple_repeat 2 156 0 3 1651 380 308 58 48 chr3 139796207 139796529 -19803254 + Lx8 LINE L1 5338 5662 -218 3 1651 210 71 0 0 chr3 139796581 139796609 -19803174 + (T)n Simple_repeat Simple_repeat 1 28 0 3 1651 773 329 121 39 chr3 139796626 139797532 -19802251 + Lx8 LINE L1 5644 6593 -880 3 1651 1991 130 39 0 chr3 139797532 139797839 -19801944 + ORR1A2 LTR MaLR 1 319 -8 3 1651 4920 170 104 11 chr3 139797843 139799133 -19800650 + ORR1A2-int LTR MaLR 1 1434 -358 3 1651 2441 133 5 15 chr3 139799621 139800017 -19799766 + ORR1A2-int LTR MaLR 1572 1963 0 3 1651 2386 129 3 0 chr3 139800017 139800343 -19799440 + ORR1A2 LTR MaLR 1 327 0 3 1651 515 372 73 41 chr3 139800344 139800958 -19798825 + Lx8 LINE L1 6590 7223 -250 3 1651 471 151 0 0 chr3 139801331 139801404 -19798379 + RLTR9C LTR ERVK 321 393 0 3 1651 2716 81 0 0 chr3 139801404 139801764 -19798019 - Lx3_Mus LINE L1 -562 6447 6088 3 1651 1629 185 71 57 chr3 139801991 139802183 -19797600 - ORR1C1 LTR MaLR -5 373 178 3 1651 740 0 33 0 chr3 139802183 139802273 -19797510 + (GGGAGA)n Simple_repeat Simple_repeat 5 97 0 3 1651 1629 185 71 57 chr3 139802273 139802447 -19797336 - ORR1C1 LTR MaLR -201 177 4 3 1651 2848 150 49 8 chr3 139802607 139803079 -19796704 + Lx2B LINE L1 6508 6998 -2 3 1651 1179 133 0 0 chr3 139803454 139804497 -19795286 + (CA)n Simple_repeat Simple_repeat 1 1043 0 3 1651 378 0 0 0 chr3 139806469 139806511 -19793272 + (TTTA)n Simple_repeat Simple_repeat 2 43 0 3 1651 305 281 69 59 chr3 139806990 139807092 -19792691 - MER91A DNA Tip100 0 196 94 3 1651 482 316 29 7 chr3 139807092 139807229 -19792554 - MER91A DNA Tip100 -17 179 40 3 1651 365 172 35 0 chr3 139807914 139807972 -19791811 - PB1D9 SINE Alu -58 62 3 3 1651 23 33 0 0 chr3 139808076 139808106 -19791677 + AT_rich Low_complexity Low_complexity 1 30 0 3 1651 201 296 134 0 chr3 139811408 139811606 -19788177 - MIRc SINE MIR -14 254 23 3 1651 414 0 0 0 chr3 139812234 139812280 -19787503 + (TG)n Simple_repeat Simple_repeat 2 47 0 3 1651 230 0 33 0 chr3 139812540 139812570 -19787213 + (TTG)n Simple_repeat Simple_repeat 3 33 0 3 1651 271 0 0 49 chr3 139812648 139812689 -19787094 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 3 1651 1173 73 0 0 chr3 139812689 139812826 -19786957 - B1_Mus1 SINE Alu -10 138 2 3 1651 199 277 72 66 chr3 139813396 139813562 -19786221 - MIR SINE MIR -66 196 30 3 1651 312 27 0 0 chr3 139814240 139814277 -19785506 + (TCCA)n Simple_repeat Simple_repeat 4 40 0 3 1651 759 56 0 0 chr3 139815501 139815608 -19784175 + L1Md_F2 LINE L1 6475 6581 -1 3 1651 22 0 0 0 chr3 139816752 139816774 -19783009 + AT_rich Low_complexity Low_complexity 1 22 0 3 1651 3394 133 14 18 chr3 139817519 139818018 -19781765 + Lx2 LINE L1 6501 6997 0 3 1651 720 275 98 82 chr3 139818048 139818468 -19781315 - L1MC2 LINE L1 -51 6293 5859 3 1651 441 0 0 0 chr3 139818468 139818517 -19781266 + (TA)n Simple_repeat Simple_repeat 1 49 0 3 1651 720 275 98 82 chr3 139818517 139818635 -19781148 - L1MC2 LINE L1 -486 5858 5746 3 1651 809 326 63 36 chr3 139818647 139818981 -19780802 - ORR1E LTR MaLR -10 349 7 3 1651 375 320 38 25 chr3 139819155 139819315 -19780468 + LTR48B LTR ERV1 136 297 -347 4 1651 36283 36 1 0 chr3 139819590 139825474 -19774309 + L1Md_T LINE L1 1 5589 -297 4 1651 9510 9 0 0 chr3 139825474 139826470 -19773313 + L1Md_T LINE L1 5590 6585 0 4 1651 225 263 0 17 chr3 139827925 139827983 -19771800 + CT-rich Low_complexity Low_complexity 1 57 0 4 1651 394 262 174 0 chr3 139828569 139828718 -19771065 + LTR79 LTR ERVL 350 524 -3 4 1651 219 286 70 23 chr3 139829089 139829175 -19770608 - MIR SINE MIR -58 150 61 4 1651 997 317 78 43 chr3 139829519 139830317 -19769466 + MER63C DNA AcHobo 72 897 -33 4 1651 1558 246 60 47 chr3 139831484 139831999 -19767784 + RCHARR1 DNA MER1_type 12 533 -441 4 1651 402 221 100 58 chr3 139832309 139832429 -19767354 - RMER10A LTR ERVL -317 125 1 4 1651 2855 115 14 5 chr3 139833169 139833613 -19766170 + RLTR13D5 LTR ERVK 576 1023 0 4 1651 618 39 0 0 chr3 139833749 139833826 -19765957 + (CTA)n Simple_repeat Simple_repeat 3 79 0 4 1651 236 302 0 16 chr3 139833842 139833906 -19765877 + (CAA)n Simple_repeat Simple_repeat 1 63 0 4 1651 1195 249 60 48 chr3 139833923 139834089 -19765694 + RCHARR1 DNA MER1_type 535 698 -276 4 1651 961 236 217 10 chr3 139834089 139834393 -19765390 + ORR1D2 LTR MaLR 1 367 -3 4 1651 1195 249 60 48 chr3 139834393 139834568 -19765215 + RCHARR1 DNA MER1_type 699 879 -95 4 1651 597 28 0 0 chr3 139834568 139834639 -19765144 + (TG)n Simple_repeat Simple_repeat 2 72 0 4 1651 1195 249 60 48 chr3 139834639 139834730 -19765053 + RCHARR1 DNA MER1_type 880 972 -2 4 1651 333 82 0 0 chr3 139835413 139835462 -19764321 + (TC)n Simple_repeat Simple_repeat 2 50 0 4 1651 792 132 0 0 chr3 139835461 139835590 -19764193 + (TA)n Simple_repeat Simple_repeat 2 130 0 4 1651 227 114 53 71 chr3 139835649 139835762 -19764021 + (TA)n Simple_repeat Simple_repeat 1 111 0 4 1651 274 193 143 33 chr3 139836058 139836149 -19763634 - L1M5 LINE L1 -413 5827 5727 4 1651 269 51 26 0 chr3 139836577 139836616 -19763167 + (TA)n Simple_repeat Simple_repeat 1 40 0 4 1651 311 347 38 64 chr3 139836635 139836900 -19762883 - L1MC LINE L1 -900 5246 4989 4 1651 635 265 59 33 chr3 139836967 139837283 -19762500 - MTD LTR MaLR -1 418 18 4 1651 307 311 9 9 chr3 139837318 139837425 -19762358 - MTD-int LTR MaLR -10 1248 1142 4 1651 939 131 17 11 chr3 139837598 139837776 -19762007 + CT-rich Low_complexity Low_complexity 1 179 0 4 1651 528 267 125 31 chr3 139837903 139838224 -19761559 - L1MEc LINE L1 -1066 5253 4903 4 1651 1701 205 21 49 chr3 139838529 139838918 -19760865 + ORR1C1 LTR MaLR 1 378 0 4 1651 436 381 83 40 chr3 139839220 139839676 -19760107 - RMER5 LTR ERV1 -13 521 46 4 1651 271 308 8 0 chr3 139839832 139839949 -19759834 - L1MEc LINE L1 -1610 4709 4592 4 1651 2327 185 5 2 chr3 139839995 139840407 -19759376 - MTC LTR MaLR -8 413 1 4 1651 309 294 19 38 chr3 139840858 139840964 -19758819 - MER20 DNA MER1_type -13 206 103 4 1651 398 320 112 25 chr3 139841129 139841414 -19758369 - L1MEc LINE L1 -6050 350 41 4 1651 450 0 0 0 chr3 139841936 139841986 -19757797 + (TTA)n Simple_repeat Simple_repeat 2 51 0 4 1651 434 403 24 14 chr3 139843011 139843436 -19756347 - Lx8 LINE L1 -157 7316 6888 4 1651 2733 72 0 0 chr3 139843442 139843788 -19755995 + ORR1A1 LTR MaLR 1 346 0 4 1651 593 246 61 8 chr3 139844018 139844149 -19755634 - B1_Mus1 SINE Alu 0 148 11 4 1651 215 299 30 0 chr3 139844387 139844454 -19755329 - B4 SINE B4 -136 156 88 4 1651 226 178 55 71 chr3 139844653 139844835 -19754948 + (CATATA)n Simple_repeat Simple_repeat 1 179 0 4 1651 327 206 74 18 chr3 139844748 139844911 -19754872 + (TTATA)n Simple_repeat Simple_repeat 5 176 0 4 1651 583 290 22 28 chr3 139844934 139845115 -19754668 - B3A SINE B2 -17 181 2 4 1651 2327 93 98 30 chr3 139845137 139845504 -19754279 + Lx LINE L1 6027 6418 -236 4 1651 1711 128 5 19 chr3 139845504 139845802 -19753981 - MTB_Mm LTR MaLR -104 296 1 4 1651 276 30 0 0 chr3 139846201 139846234 -19753549 + (TTTTA)n Simple_repeat Simple_repeat 5 37 0 4 1651 461 232 12 12 chr3 139846321 139846491 -19753292 + CT-rich Low_complexity Low_complexity 1 170 0 4 1651 269 308 0 25 chr3 139846511 139846591 -19753192 + C-rich Low_complexity Low_complexity 3 80 0 4 1651 846 62 0 0 chr3 139847120 139847233 -19752550 + (TATG)n Simple_repeat Simple_repeat 2 114 0 4 1651 377 292 2 22 chr3 139847233 139847336 -19752447 - B1F SINE Alu -8 141 19 4 1651 506 316 38 42 chr3 139847874 139848112 -19751671 + LTR84a LTR ERVL 55 291 -466 4 1651 551 312 37 16 chr3 139848320 139848509 -19751274 + LTR84a LTR ERVL 534 726 -31 4 1651 183 80 0 0 chr3 139849307 139849332 -19750451 + (GAAA)n Simple_repeat Simple_repeat 1 25 0 4 1651 675 94 0 0 chr3 139849339 139849435 -19750348 + (GA)n Simple_repeat Simple_repeat 1 96 0 4 1651 372 119 0 0 chr3 139849532 139849591 -19750192 + (CA)n Simple_repeat Simple_repeat 2 60 0 4 1651 395 19 19 0 chr3 139849591 139849642 -19750141 + (GA)n Simple_repeat Simple_repeat 2 54 0 4 1651 324 0 0 0 chr3 139849711 139849747 -19750036 + (TTCA)n Simple_repeat Simple_repeat 4 39 0 4 1651 534 57 0 0 chr3 139850484 139850554 -19749229 + (TG)n Simple_repeat Simple_repeat 1 70 0 4 1651 469 311 74 42 chr3 139850561 139850776 -19749007 - B4 SINE B4 -3 289 68 4 1651 1192 103 0 8 chr3 139850891 139851154 -19748629 + (TTCC)n Simple_repeat Simple_repeat 1 261 0 4 1651 186 43 0 0 chr3 139851160 139851183 -19748600 + (TTCTCC)n Simple_repeat Simple_repeat 3 25 0 4 1651 1072 155 0 44 chr3 139851317 139851362 -19748421 - B2_Mm2 SINE B2 0 195 159 4 1651 393 22 0 0 chr3 139851362 139851408 -19748375 + (TTTA)n Simple_repeat Simple_repeat 3 48 0 4 1651 1072 155 0 44 chr3 139851408 139851565 -19748218 - B2_Mm2 SINE B2 -37 158 3 4 1651 25 0 0 0 chr3 139852249 139852274 -19747509 + AT_rich Low_complexity Low_complexity 1 25 0 4 1651 568 200 178 0 chr3 139852287 139852422 -19747361 - URR1A DNA MER1_type -66 160 2 4 1651 24 53 0 0 chr3 139852672 139852710 -19747073 + AT_rich Low_complexity Low_complexity 1 38 0 4 1651 329 352 88 39 chr3 139853460 139853744 -19746039 + Lx9 LINE L1 7006 7303 -341 4 1652 443 276 0 0 chr3 139853913 139854000 -19745783 + BC1_Mm scRNA scRNA 1 87 -65 4 1652 775 163 12 0 chr3 139854001 139854167 -19745616 + GA-rich Low_complexity Low_complexity 1 168 0 4 1652 690 162 37 49 chr3 139854265 139854427 -19745356 + Lx LINE L1 6490 6649 -5 4 1652 330 0 60 0 chr3 139854446 139854496 -19745287 + (CAA)n Simple_repeat Simple_repeat 2 54 0 4 1652 23 0 0 0 chr3 139855267 139855290 -19744493 + AT_rich Low_complexity Low_complexity 1 23 0 4 1652 366 330 70 51 chr3 139856331 139856545 -19743238 - MLT1A1 LTR MaLR 0 408 191 4 1652 480 18 0 0 chr3 139856545 139856602 -19743181 + (CA)n Simple_repeat Simple_repeat 2 58 0 4 1652 215 312 114 23 chr3 139856707 139856838 -19742945 + B1_Mur2 SINE Alu 5 147 -2 4 1652 392 269 111 0 chr3 139859229 139859337 -19740446 + MER34A1 LTR ERV1 6 125 -462 4 1652 552 77 0 0 chr3 139859340 139859418 -19740365 + (TCC)n Simple_repeat Simple_repeat 1 78 0 4 1652 644 323 91 50 chr3 139859418 139859435 -19740348 + MER34A1 LTR ERV1 151 165 -422 4 1652 1233 106 0 0 chr3 139859435 139859795 -19739988 + (TTC)n Simple_repeat Simple_repeat 1 360 0 4 1652 644 323 91 50 chr3 139859795 139860195 -19739588 + MER34A1 LTR ERV1 166 587 0 4 1652 22 35 0 0 chr3 139860979 139861008 -19738775 + AT_rich Low_complexity Low_complexity 1 29 0 4 1652 1749 269 27 22 chr3 139861085 139861530 -19738253 - Lx6 LINE L1 -176 7284 6838 4 1652 1971 239 17 5 chr3 139861536 139861957 -19737826 - Lx6 LINE L1 -751 6709 6284 4 1652 1487 194 45 15 chr3 139861955 139862322 -19737461 + Lx6 LINE L1 5538 5916 -1544 4 1652 773 282 42 14 chr3 139862337 139862553 -19737230 + Lx6 LINE L1 6075 6296 -1164 4 1652 446 0 19 0 chr3 139863686 139863740 -19736043 + (CA)n Simple_repeat Simple_repeat 2 56 0 4 1652 23 0 0 0 chr3 139865282 139865305 -19734478 + AT_rich Low_complexity Low_complexity 1 23 0 4 1652 466 270 30 35 chr3 139865368 139865537 -19734246 - RMER15 LTR ERVL -68 507 340 4 1652 486 0 0 0 chr3 139865567 139865621 -19734162 + (TTA)n Simple_repeat Simple_repeat 3 56 0 4 1652 541 149 97 0 chr3 139865768 139865882 -19733901 - ORR1B2 LTR MaLR -242 125 1 4 1652 1258 169 0 0 chr3 139866038 139866239 -19733544 - URR1B DNA MER1_type -23 202 2 4 1652 285 29 0 0 chr3 139866772 139866806 -19732977 + (GA)n Simple_repeat Simple_repeat 1 34 0 4 1652 355 346 82 33 chr3 139868269 139868310 -19731473 + MLT2C1 LTR ERVL 2 144 -253 4 1652 401 291 17 52 chr3 139868310 139868484 -19731299 + MLT1E3 LTR MaLR 64 231 -393 4 1652 355 346 82 33 chr3 139868484 139868514 -19731269 + MLT2C1 LTR ERVL 145 258 -139 4 1652 357 162 0 0 chr3 139868591 139868659 -19731124 + CT-rich Low_complexity Low_complexity 2 69 0 4 1652 317 333 70 51 chr3 139869875 139870033 -19729750 - MLT1A0 LTR MaLR -192 173 13 4 1652 1841 154 47 15 chr3 139871033 139871376 -19728407 - RLTR15 LTR ERVK -5 354 1 4 1652 243 260 182 0 chr3 139872047 139872124 -19727659 - L2b LINE L2 -4 3371 3281 4 1652 368 306 50 61 chr3 139872622 139872803 -19726980 - Lx9 LINE L1 -440 7204 7026 4 1652 420 164 16 72 chr3 139872814 139872939 -19726844 + Lx9 LINE L1 7527 7644 0 4 1652 957 259 110 29 chr3 139873405 139873751 -19726032 - ORR1D1 LTR MaLR 0 374 1 4 1652 3681 77 2 2 chr3 139875423 139875903 -19723880 - L1_Mus1 LINE L1 0 6567 6088 4 1652 621 333 57 29 chr3 139876215 139876530 -19723253 + RMER15 LTR ERVL 249 572 -3 4 1652 750 135 0 0 chr3 139877803 139877944 -19721839 + (TC)n Simple_repeat Simple_repeat 2 142 0 4 1652 575 27 14 0 chr3 139879225 139879298 -19720485 + (GAAAA)n Simple_repeat Simple_repeat 1 74 0 4 1652 5605 29 0 0 chr3 139879430 139880085 -19719698 + L1Md_T LINE L1 5927 6581 -1 4 1652 268 281 101 8 chr3 139880350 139880479 -19719304 + L1MA7 LINE L1 5500 5640 -651 4 1652 481 341 12 6 chr3 139880485 139880650 -19719133 - ID_B1 SINE B4 -57 167 2 4 1652 561 251 58 5 chr3 139880846 139881054 -19718729 + L1MA7 LINE L1 6010 6228 -63 4 1652 453 257 64 12 chr3 139881178 139881351 -19718432 + B3A SINE B2 1 182 -16 4 1652 957 239 16 20 chr3 139881394 139881638 -19718145 - Lx9 LINE L1 -180 7464 7222 4 1652 297 51 0 0 chr3 139881670 139881709 -19718074 + (CA)n Simple_repeat Simple_repeat 2 40 0 4 1652 21 89 0 0 chr3 139881782 139881838 -19717945 + AT_rich Low_complexity Low_complexity 1 56 0 4 1652 3088 98 49 4 chr3 139881922 139882082 -19717701 - MT2C_Mm LTR ERVL -2 473 306 4 1652 750 23 0 0 chr3 139882082 139882170 -19717613 + (GA)n Simple_repeat Simple_repeat 1 88 0 4 1652 3088 98 49 4 chr3 139882170 139882462 -19717321 - MT2C_Mm LTR ERVL -170 305 1 4 1652 903 169 0 0 chr3 139883490 139883700 -19716083 + (TG)n Simple_repeat Simple_repeat 1 210 0 4 1652 3242 242 112 18 chr3 139883869 139884850 -19714933 - Lx9 LINE L1 -29 7615 6543 5 1652 438 69 0 0 chr3 139884853 139884911 -19714872 + (TATG)n Simple_repeat Simple_repeat 2 59 0 5 1652 629 151 6 0 chr3 139884916 139885082 -19714701 + (TCTA)n Simple_repeat Simple_repeat 4 170 0 5 1652 445 342 39 43 chr3 139885083 139885291 -19714492 - B4A SINE B4 -85 207 1 5 1652 1165 118 0 25 chr3 139885636 139885836 -19713947 - B2_Mm2 SINE B2 0 195 1 5 1652 230 239 0 0 chr3 139886637 139886704 -19713079 + T-rich Low_complexity Low_complexity 1 67 0 5 1652 1031 311 31 31 chr3 139887671 139887963 -19711820 - B4 SINE B4 0 292 1 5 1652 399 41 0 0 chr3 139888921 139888970 -19710813 + (TGG)n Simple_repeat Simple_repeat 1 49 0 5 1652 240 35 0 0 chr3 139888978 139889007 -19710776 + (TG)n Simple_repeat Simple_repeat 1 29 0 5 1652 183 221 105 95 chr3 139889538 139889633 -19710150 + L3 LINE CR1 4126 4221 -268 5 1652 1320 274 42 26 chr3 139889696 139890078 -19709705 - MTD LTR MaLR -14 405 18 5 1652 6221 80 45 25 chr3 139891068 139892424 -19707359 - Lx3_Mus LINE L1 -483 6526 5154 5 1652 3395 94 32 18 chr3 139892424 139892931 -19706852 + Lx3_Mus LINE L1 6496 7009 0 5 1652 21 0 0 0 chr3 139893629 139893650 -19706133 + AT_rich Low_complexity Low_complexity 1 21 0 5 1652 180 125 0 0 chr3 139894667 139894699 -19705084 + (TG)n Simple_repeat Simple_repeat 2 33 0 5 1652 260 357 9 26 chr3 139894699 139894814 -19704969 - RSINE1 SINE B4 -24 141 29 5 1652 28 0 0 0 chr3 139895200 139895228 -19704555 + AT_rich Low_complexity Low_complexity 1 28 0 5 1652 290 312 32 0 chr3 139895251 139895344 -19704439 - PB1D7 SINE Alu -5 115 20 5 1652 381 180 259 34 chr3 139895411 139895582 -19704201 + Lx6 LINE L1 7240 7449 -11 5 1652 351 373 41 15 chr3 139896221 139896417 -19703366 + MIRb SINE MIR 54 254 -14 5 1652 297 333 71 0 chr3 139896433 139896574 -19703209 + MIRb SINE MIR 104 254 -14 5 1652 3136 197 28 109 chr3 139897834 139898251 -19701532 + L1VL4 LINE L1 142 552 -5750 5 1652 3259 51 2 5 chr3 139898251 139898648 -19701135 + MTA_Mm LTR MaLR 1 396 0 5 1652 4970 129 17 36 chr3 139898648 139899772 -19700011 + L1VL4 LINE L1 553 1616 -1943 5 1652 1026 266 43 33 chr3 139900210 139900509 -19699274 - Lx6 LINE L1 -40 7420 7119 5 1652 342 291 50 101 chr3 139900517 139900561 -19699222 - Lx6 LINE L1 -450 6600 6567 5 1652 461 47 16 0 chr3 139900561 139900625 -19699158 + (TA)n Simple_repeat Simple_repeat 1 65 0 5 1652 988 276 53 18 chr3 139900625 139901075 -19698708 - Lx6 LINE L1 -585 6875 6185 5 1652 837 298 106 39 chr3 139901106 139901466 -19698317 - Lx6 LINE L1 -2 7458 7075 5 1652 284 317 86 68 chr3 139901654 139901874 -19697909 - Charlie22a DNA MER1_type -224 267 44 5 1652 323 369 68 6 chr3 139902305 139902466 -19697317 + Tigger5 DNA MER2_type 39 209 -2197 5 1652 376 303 95 35 chr3 139903039 139903229 -19696554 - MLT1A1 LTR MaLR -132 233 47 5 1652 3053 158 68 53 chr3 139903472 139903757 -19696026 - RMER6C LTR ERVK 0 690 414 5 1652 249 128 0 0 chr3 139903757 139903804 -19695979 + (AACTG)n Simple_repeat Simple_repeat 2 48 0 5 1652 3053 158 68 53 chr3 139903804 139904198 -19695585 - RMER6C LTR ERVK -277 413 1 5 1652 326 279 118 19 chr3 139904993 139905154 -19694629 - L1MC4a LINE L1 -175 7707 7531 5 1652 21 82 0 0 chr3 139905910 139905959 -19693824 + AT_rich Low_complexity Low_complexity 1 49 0 5 1652 521 76 13 0 chr3 139907072 139907151 -19692632 + (TC)n Simple_repeat Simple_repeat 1 80 0 5 1652 5778 189 70 12 chr3 139907369 139908568 -19691215 - Lx4B LINE L1 -2 7056 5789 5 1652 275 296 0 60 chr3 139908938 139909089 -19690694 - Lx9 LINE L1 -1616 6028 5887 5 1652 310 140 0 0 chr3 139909105 139909155 -19690628 + Lx9 LINE L1 7142 7191 -453 5 1652 6494 194 47 30 chr3 139909157 139910999 -19688784 - Lx7 LINE L1 -1377 6319 4461 5 1652 1974 256 70 51 chr3 139911019 139911691 -19688092 - Lx7 LINE L1 -6988 740 56 5 1652 397 241 120 65 chr3 139912715 139912915 -19686868 + B3 SINE B2 5 215 -1 5 1652 24 32 0 0 chr3 139912916 139912947 -19686836 + AT_rich Low_complexity Low_complexity 1 31 0 5 1652 2036 91 0 17 chr3 139913017 139913318 -19686465 + L1Md_F2 LINE L1 6281 6576 -6 5 1652 242 211 82 31 chr3 139914338 139914436 -19685347 - Lx2 LINE L1 0 6997 6895 5 1652 923 70 8 0 chr3 139914451 139914580 -19685203 + B1_Mus1 SINE Alu 10 139 -9 5 1652 384 40 0 0 chr3 139915130 139915180 -19684603 + (T)n Simple_repeat Simple_repeat 1 50 0 5 1652 369 0 0 0 chr3 139915826 139915867 -19683916 + (TAAA)n Simple_repeat Simple_repeat 2 42 0 5 1652 662 306 155 32 chr3 139918756 139919243 -19680540 - Lx7 LINE L1 -192 7281 6722 5 1652 754 147 62 0 chr3 139919505 139919634 -19680149 + B1_Mus2 SINE Alu 10 146 -1 5 1652 243 366 0 0 chr3 139921148 139921249 -19678534 + GA-rich Low_complexity Low_complexity 3 103 0 5 1652 441 0 0 0 chr3 139924210 139924259 -19675524 + (TA)n Simple_repeat Simple_repeat 2 50 0 5 1652 528 16 0 0 chr3 139924259 139924319 -19675464 + (TG)n Simple_repeat Simple_repeat 2 62 0 5 1652 1482 265 7 81 chr3 139924573 139925020 -19674763 + MTD LTR MaLR 6 419 0 5 1652 227 269 53 98 chr3 139925132 139925264 -19674519 - Lx8 LINE L1 -375 7098 6973 5 1652 659 336 35 14 chr3 139925571 139925861 -19673922 - Lx8 LINE L1 -869 6604 6309 5 1652 396 0 0 0 chr3 139926180 139926224 -19673559 + (TC)n Simple_repeat Simple_repeat 1 44 0 5 1652 293 140 0 17 chr3 139926224 139926282 -19673501 + (CA)n Simple_repeat Simple_repeat 2 58 0 5 1652 274 299 154 6 chr3 139927897 139928072 -19671711 + Charlie2a DNA MER1_type 1457 1657 -1204 5 1652 423 312 23 8 chr3 139928256 139928385 -19671398 + B1_Mur1 SINE Alu 2 132 -17 5 1652 381 43 0 0 chr3 139928393 139928440 -19671343 + (TG)n Simple_repeat Simple_repeat 1 47 0 5 1652 767 322 45 59 chr3 139931254 139931676 -19668107 + MER34A1 LTR ERV1 144 559 -28 5 1652 261 0 0 0 chr3 139931734 139931763 -19668020 + (CA)n Simple_repeat Simple_repeat 2 30 0 5 1652 246 356 0 0 chr3 139931796 139931897 -19667886 + (CA)n Simple_repeat Simple_repeat 2 102 0 5 1652 384 22 0 0 chr3 139932683 139932728 -19667055 + (CA)n Simple_repeat Simple_repeat 2 46 0 5 1652 922 318 86 28 chr3 139933054 139933830 -19665953 + L1M2 LINE L1 4483 5303 -840 5 1652 569 247 84 16 chr3 139934094 139934345 -19665438 + L1M2 LINE L1 5362 5629 -671 5 1652 278 340 128 16 chr3 139936948 139937136 -19662647 + ID_B1 SINE B4 4 212 -12 5 1652 522 225 18 18 chr3 139937227 139937340 -19662443 + RMER15 LTR ERVL 28 140 -435 5 1652 261 0 0 0 chr3 139937471 139937500 -19662283 + (TTTA)n Simple_repeat Simple_repeat 4 32 0 5 1652 5891 198 34 16 chr3 139937509 139938606 -19661177 - Lx4B LINE L1 -31 7027 5836 5 1652 2364 25 0 0 chr3 139938606 139938881 -19660902 - L1Md_A LINE L1 -1 6581 6307 5 1652 5891 158 9 1 chr3 139938881 139939603 -19660180 - Lx4B LINE L1 -1223 5835 5102 5 1652 941 333 42 88 chr3 139939608 139939695 -19660088 + RMER15 LTR ERVL 153 226 -349 5 1652 255 61 0 0 chr3 139939695 139939728 -19660055 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 5 1652 941 333 42 88 chr3 139939728 139940074 -19659709 + RMER15 LTR ERVL 227 566 -9 5 1652 553 287 38 59 chr3 139940675 139940934 -19658849 - B4 SINE B4 -27 265 5 5 1652 246 336 57 43 chr3 139941011 139941151 -19658632 + L2 LINE L2 2404 2545 -874 5 1652 399 335 329 26 chr3 139942293 139942567 -19657216 + ORR1E LTR MaLR 1 357 -2 5 1652 428 357 87 58 chr3 139942628 139942937 -19656846 - MER2 DNA MER2_type -1 344 27 5 1652 213 39 0 0 chr3 139943105 139943131 -19656652 + (T)n Simple_repeat Simple_repeat 1 26 0 5 1652 4175 2 0 0 chr3 139943134 139943596 -19656187 - L1Md_A LINE L1 0 6582 6121 5 1652 3433 0 0 0 chr3 139943596 139943975 -19655808 + L1Md_A LINE L1 5747 6125 -457 5 1652 25 0 0 0 chr3 139944812 139944837 -19654946 + AT_rich Low_complexity Low_complexity 1 25 0 5 1652 265 310 103 0 chr3 139945438 139945525 -19654258 + B1F1 SINE Alu 1 96 -53 5 1652 320 334 103 58 chr3 139946083 139946518 -19653265 - L1ME3 LINE L1 -31 6131 5677 5 1652 442 304 48 7 chr3 139946779 139946925 -19652858 - MLT1B LTR MaLR -235 155 4 5 1652 450 238 10 0 chr3 139946964 139947065 -19652718 + Lx9 LINE L1 7363 7464 -180 5 1652 307 244 17 25 chr3 139947084 139947202 -19652581 + Lx9 LINE L1 7527 7643 -1 5 1652 416 369 68 47 chr3 139947355 139947689 -19652094 - L1ME3 LINE L1 -850 5296 4971 5 1652 450 0 0 0 chr3 139947689 139947739 -19652044 + (TA)n Simple_repeat Simple_repeat 1 50 0 5 1652 416 369 68 47 chr3 139947739 139947876 -19651907 - L1ME3 LINE L1 -1176 4970 4815 5 1652 951 75 29 15 chr3 139948851 139948987 -19650796 - B1_Mm SINE Alu -9 138 1 5 1652 347 41 20 0 chr3 139949164 139949213 -19650570 + (CA)n Simple_repeat Simple_repeat 1 50 0 5 1652 237 315 8 143 chr3 139950409 139950535 -19649248 - Tigger7 DNA MER2_type -1994 497 389 5 1652 456 154 16 8 chr3 139950957 139951081 -19648702 + (TG)n Simple_repeat Simple_repeat 2 126 0 5 1652 7505 103 17 1 chr3 139951181 139952675 -19647108 - L1_Mus3 LINE L1 -3 6635 5123 5 1652 420 373 67 49 chr3 139952705 139952928 -19646855 - B4A SINE B4 -39 253 27 5 1652 319 278 34 97 chr3 139953967 139954101 -19645682 - L1MC4 LINE L1 -9 8033 7908 5 1652 825 265 0 24 chr3 139954101 139954310 -19645473 - B3 SINE B2 -12 204 1 5 1652 319 278 34 97 chr3 139954310 139954350 -19645433 - L1MC4 LINE L1 -135 7907 7870 5 1652 1204 281 86 16 chr3 139954524 139954897 -19644886 - MTD LTR MaLR 0 419 21 5 1652 279 0 0 0 chr3 139955341 139955372 -19644411 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 5 1652 378 0 0 0 chr3 139955558 139955600 -19644183 + (CA)n Simple_repeat Simple_repeat 2 43 0 5 1652 216 0 0 0 chr3 139955879 139955903 -19643880 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 5 1652 294 164 0 0 chr3 139956350 139956405 -19643378 + (TA)n Simple_repeat Simple_repeat 1 55 0 5 1652 192 265 81 46 chr3 139958319 139958406 -19641377 + L4 LINE RTE 862 951 -1078 5 1652 668 277 65 55 chr3 139959748 139960115 -19639668 + L1MC4a LINE L1 7201 7571 -311 5 1652 241 127 0 52 chr3 139960453 139960511 -19639272 + GA-rich Low_complexity Low_complexity 5 59 0 5 1652 441 148 0 0 chr3 139961326 139961407 -19638376 + (TA)n Simple_repeat Simple_repeat 2 82 0 5 1652 187 180 100 0 chr3 139962114 139962164 -19637619 + L2 LINE L2 1734 1788 -1631 5 1652 1805 183 19 83 chr3 139962241 139962723 -19637060 + RLTR11B LTR ERVK 3 453 0 5 1652 252 0 0 0 chr3 139963158 139963186 -19636597 + (TTA)n Simple_repeat Simple_repeat 2 29 0 5 1652 5627 168 49 16 chr3 139963186 139964206 -19635577 - Lx4A LINE L1 -5 7053 6000 5 1652 1792 112 0 37 chr3 139964241 139964538 -19635245 - Lx LINE L1 -2 6652 6367 6 1652 2482 94 108 42 chr3 139964547 139965048 -19634735 - Lx4A LINE L1 -1054 6004 5459 5 1652 1512 188 2 22 chr3 139965039 139965377 -19634406 - L1_Mur2 LINE L1 -6288 424 1 6 1652 310 282 13 26 chr3 139965569 139965722 -19634061 + GA-rich Low_complexity Low_complexity 2 152 0 6 1652 364 347 80 66 chr3 139966680 139967244 -19632539 - L1M5 LINE L1 -1242 4904 4333 6 1652 25 0 0 0 chr3 139967711 139967736 -19632047 + AT_rich Low_complexity Low_complexity 1 25 0 6 1652 7546 94 0 0 chr3 139967736 139969337 -19630446 - L1_Mus1 LINE L1 -2 6565 4965 6 1652 2267 97 0 0 chr3 139969338 139969657 -19630126 + L1_Mus1 LINE L1 4659 4977 -906 6 1652 28 0 0 0 chr3 139970994 139971022 -19628761 + AT_rich Low_complexity Low_complexity 1 28 0 6 1652 3825 245 79 18 chr3 139971259 139972168 -19627615 - Lx5 LINE L1 -7 7043 6079 6 1652 5735 168 34 14 chr3 139972169 139972233 -19627550 + L1_Mur2 LINE L1 3417 3479 -2398 6 1652 645 14 0 0 chr3 139972233 139972307 -19627476 + (GAAA)n Simple_repeat Simple_repeat 3 76 0 6 1652 5735 168 34 14 chr3 139972307 139973394 -19626389 + L1_Mur2 LINE L1 3480 4591 -1286 6 1652 2351 157 35 117 chr3 139973394 139973668 -19626115 - RLTR21 LTR ERVK 0 1572 1304 6 1652 405 0 0 0 chr3 139973668 139973713 -19626070 + (CA)n Simple_repeat Simple_repeat 1 45 0 6 1652 2351 157 35 117 chr3 139973713 139973802 -19625981 - RLTR21 LTR ERVK -269 1303 1205 6 1652 378 61 0 0 chr3 139973802 139973851 -19625932 + (CA)n Simple_repeat Simple_repeat 2 50 0 6 1652 6431 158 54 48 chr3 139973851 139975207 -19624576 - RLTR21 LTR ERVK -267 1305 1 6 1652 21 57 0 0 chr3 139975400 139975435 -19624348 + AT_rich Low_complexity Low_complexity 1 35 0 6 1652 403 310 96 57 chr3 139976207 139976416 -19623367 - MER20 DNA MER1_type -2 217 1 6 1652 201 313 41 88 chr3 139976572 139976719 -19623064 - MIRc SINE MIR -126 142 3 6 1652 378 0 0 0 chr3 139977420 139977462 -19622321 + (TG)n Simple_repeat Simple_repeat 1 42 0 6 1652 567 0 0 0 chr3 139977462 139977524 -19622259 + (GA)n Simple_repeat Simple_repeat 1 63 0 6 1652 262 298 71 0 chr3 139977945 139978029 -19621754 - MLT1E1 LTR MaLR -2 652 563 6 1652 247 318 217 19 chr3 139978076 139978233 -19621550 - MLT1E1 LTR MaLR -194 486 299 6 1652 203 320 0 25 chr3 139978243 139978323 -19621460 + (CATA)n Simple_repeat Simple_repeat 2 79 0 6 1652 276 77 0 0 chr3 139978340 139978379 -19621404 + (TA)n Simple_repeat Simple_repeat 2 40 0 6 1652 360 43 0 0 chr3 139978379 139978424 -19621359 + (TG)n Simple_repeat Simple_repeat 1 46 0 6 1652 453 81 0 0 chr3 139978769 139978831 -19620952 + (CA)n Simple_repeat Simple_repeat 1 62 0 6 1652 273 362 0 9 chr3 139978832 139978938 -19620845 - MLT2B1 LTR ERVL -381 139 35 6 1652 556 334 75 67 chr3 139979924 139980312 -19619471 + Tigger7 DNA MER2_type 7 397 -2094 6 1652 270 337 0 0 chr3 139980749 139980832 -19618951 + Tigger7 DNA MER2_type 2401 2483 -8 6 1652 225 0 0 0 chr3 139981591 139981616 -19618167 + (TA)n Simple_repeat Simple_repeat 1 25 0 6 1652 1169 68 0 0 chr3 139982116 139982264 -19617519 + B1_Mus1 SINE Alu 1 148 0 6 1652 628 207 235 28 chr3 139982761 139982940 -19616843 + B3 SINE B2 1 216 0 6 1652 351 0 0 0 chr3 139983152 139983191 -19616592 + (TC)n Simple_repeat Simple_repeat 2 40 0 6 1652 339 25 0 0 chr3 139983191 139983230 -19616553 + (TG)n Simple_repeat Simple_repeat 1 40 0 6 1652 378 0 0 0 chr3 139983230 139983271 -19616512 + (GA)n Simple_repeat Simple_repeat 1 42 0 6 1652 381 148 11 54 chr3 139984463 139984556 -19615227 + Lx2 LINE L1 6606 6694 -303 6 206 7508 166 8 2 chr3 139984554 139985915 -19613868 + L1_Mur2 LINE L1 3948 5316 -561 6 1653 933 176 0 0 chr3 139985934 139986110 -19613673 + CT-rich Low_complexity Low_complexity 3 178 0 6 1653 948 149 30 0 chr3 139986147 139986315 -19613468 - L1_Mus3 LINE L1 -7 6631 6459 6 1653 319 93 0 0 chr3 139986316 139986359 -19613424 + L1_Mur2 LINE L1 5509 5551 -335 6 1653 2296 234 22 33 chr3 139986357 139986985 -19612798 + Lx7 LINE L1 7076 7696 0 6 1653 22 0 0 0 chr3 139986997 139987019 -19612764 + AT_rich Low_complexity Low_complexity 1 22 0 6 1653 259 85 0 41 chr3 139987427 139987476 -19612307 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 6 1653 21 0 0 0 chr3 139988557 139988578 -19611205 + AT_rich Low_complexity Low_complexity 1 21 0 6 1653 31 0 0 0 chr3 139989186 139989217 -19610566 + AT_rich Low_complexity Low_complexity 1 31 0 6 1653 180 111 0 0 chr3 139990282 139990309 -19609474 + (TA)n Simple_repeat Simple_repeat 1 27 0 6 1653 2859 254 83 6 chr3 139990309 139991141 -19608642 - Lx9 LINE L1 -189 7455 6560 6 1653 457 183 0 80 chr3 139991122 139991235 -19608548 + Lx9 LINE L1 7292 7395 -249 6 1653 293 230 62 31 chr3 139991242 139991372 -19608411 + Lx9 LINE L1 7499 7632 -12 6 1653 8881 112 8 34 chr3 139992944 139995224 -19604559 - Lx3A LINE L1 -2 6979 4759 6 1653 779 310 60 47 chr3 139995502 139995803 -19603980 + MTE2a LTR MaLR 57 361 -18 6 1653 330 26 0 0 chr3 139997157 139997196 -19602587 + (TTTA)n Simple_repeat Simple_repeat 3 41 0 6 1653 799 156 7 15 chr3 139997197 139997334 -19602449 - B2_Mm2 SINE B2 -56 139 4 6 1653 1573 237 68 20 chr3 139997490 139997929 -19601854 - Lx9 LINE L1 -298 7346 6887 6 1653 263 277 0 32 chr3 139998073 139998196 -19601587 + (TATATG)n Simple_repeat Simple_repeat 3 121 0 6 1653 277 242 0 16 chr3 139998196 139998259 -19601524 - ORR1D2 LTR MaLR -3 367 306 6 1653 396 0 0 0 chr3 139998261 139998305 -19601478 + (TG)n Simple_repeat Simple_repeat 2 45 0 6 1653 275 286 9 0 chr3 139998330 139998435 -19601348 + Lx9 LINE L1 7538 7643 -1 6 1653 257 316 0 0 chr3 139998861 139999005 -19600778 + (TG)n Simple_repeat Simple_repeat 1 144 0 6 1653 383 0 21 0 chr3 139999009 139999056 -19600727 + (TCTA)n Simple_repeat Simple_repeat 3 50 0 6 1653 781 319 38 4 chr3 139999065 139999304 -19600479 - ORR1D2 LTR MaLR -11 359 113 6 1653 37 39 0 0 chr3 139999313 139999364 -19600419 + AT_rich Low_complexity Low_complexity 1 51 0 6 1653 2409 254 60 39 chr3 139999364 140000000 -19599783 - Lx6 LINE L1 -9 7451 6803 6 1653 2075 230 20 33 chr3 140000000 140000489 -19599294 - Lx6 LINE L1 -658 6802 6320 1 1653 211 339 113 0 chr3 140001703 140001818 -19597965 - MIR SINE MIR -1 261 134 2 1653 268 257 40 79 chr3 140004064 140004140 -19595643 - MamGypLTR1d LTR Gypsy -586 227 155 3 1653 276 100 0 0 chr3 140004526 140004566 -19595217 + (TG)n Simple_repeat Simple_repeat 2 41 0 4 1653 229 165 43 21 chr3 140005948 140006041 -19593742 + (CATATA)n Simple_repeat Simple_repeat 6 100 0 5 1653 414 100 0 0 chr3 140007353 140007413 -19592370 + (TA)n Simple_repeat Simple_repeat 1 60 0 6 1653 741 58 0 0 chr3 140009446 140009549 -19590234 + (CA)n Simple_repeat Simple_repeat 2 104 0 7 1653 692 133 8 0 chr3 140009733 140009853 -19589930 + (CATA)n Simple_repeat Simple_repeat 2 122 0 8 1653 1236 264 82 17 chr3 140009863 140010218 -19589565 + Lx7 LINE L1 6967 7344 -352 9 1653 564 15 0 0 chr3 140010233 140010298 -19589485 + (TCTCC)n Simple_repeat Simple_repeat 1 65 0 1 1653 1092 131 0 0 chr3 140010301 140010476 -19589307 + (TTCCC)n Simple_repeat Simple_repeat 3 177 0 1 1653 24 32 0 0 chr3 140012440 140012471 -19587312 + AT_rich Low_complexity Low_complexity 1 31 0 1 1653 621 257 28 11 chr3 140012664 140012841 -19586942 - B3A SINE B2 -16 182 3 1 1653 22 0 0 0 chr3 140013157 140013179 -19586604 + AT_rich Low_complexity Low_complexity 1 22 0 1 1653 4321 126 16 4 chr3 140013186 140013864 -19585919 - Lx3_Mus LINE L1 -18 6991 6306 1 1653 1932 125 0 30 chr3 140013864 140014203 -19585580 + Lx3_Mus LINE L1 5979 6307 -702 1 1653 538 260 88 59 chr3 140014214 140014418 -19585365 + Lx9 LINE L1 7124 7333 -311 1 1653 333 0 0 0 chr3 140014422 140014459 -19585324 + (TG)n Simple_repeat Simple_repeat 1 37 0 1 1653 450 0 0 0 chr3 140014459 140014508 -19585275 + (GA)n Simple_repeat Simple_repeat 1 50 0 1 1653 283 96 0 37 chr3 140014721 140014775 -19585008 + (TAA)n Simple_repeat Simple_repeat 1 52 0 1 1653 269 354 83 7 chr3 140017016 140017161 -19582622 - RSINE1 SINE B4 -5 160 5 2 1653 3016 128 95 8 chr3 140018151 140018284 -19581499 - Lx LINE L1 -1 6653 6520 2 1653 183 42 0 0 chr3 140018284 140018308 -19581475 + (TCCC)n Simple_repeat Simple_repeat 2 25 0 2 1653 3016 128 95 8 chr3 140018308 140018688 -19581095 - Lx LINE L1 -135 6519 6096 2 1653 442 82 0 0 chr3 140018688 140018749 -19581034 + Lx LINE L1 5738 5798 -856 2 1653 210 91 0 0 chr3 140018749 140018782 -19581001 + (CAAAAA)n Simple_repeat Simple_repeat 3 35 0 2 1653 1789 126 31 3 chr3 140018800 140019086 -19580697 + L1_Mus4 LINE L1 5780 6073 -563 2 1653 1098 79 20 0 chr3 140019117 140019269 -19580514 - L1_Mus2 LINE L1 0 6566 6412 2 1653 450 0 0 0 chr3 140020208 140020258 -19579525 + (CA)n Simple_repeat Simple_repeat 1 50 0 2 1653 1059 119 54 0 chr3 140020482 140020649 -19579134 - RMER19B LTR ERVK -12 890 715 2 1653 834 179 25 13 chr3 140020649 140020807 -19578976 + RLTR20B3 LTR ERVK 1 160 -417 2 1653 362 82 0 0 chr3 140020776 140020825 -19578958 + RLTR20B3 LTR ERVK 424 472 -105 2 1653 3345 191 59 16 chr3 140020829 140021519 -19578264 - RMER19B LTR ERVK -182 720 1 2 1653 31 26 0 0 chr3 140023964 140024002 -19575781 + AT_rich Low_complexity Low_complexity 1 38 0 3 1653 2896 261 43 25 chr3 140024565 140025509 -19574274 - RMER1C Other Other -12 1330 42 3 1653 1475 97 0 68 chr3 140025594 140025859 -19573924 + L1_Mur1 LINE L1 5153 5399 -487 3 1653 4715 111 24 3 chr3 140025861 140026568 -19573215 + Lx3_Mus LINE L1 6287 7008 -1 3 1653 24 32 0 0 chr3 140026569 140026600 -19573183 + AT_rich Low_complexity Low_complexity 1 31 0 3 1653 840 314 58 16 chr3 140026600 140026982 -19572801 - Lx9 LINE L1 -360 7284 6887 3 1653 534 273 52 93 chr3 140026980 140027388 -19572395 + Lx9 LINE L1 4902 5292 -555 3 1653 462 114 0 0 chr3 140027403 140027473 -19572310 + (TTTA)n Simple_repeat Simple_repeat 1 70 0 3 1653 2687 118 3 3 chr3 140027475 140027866 -19571917 - Lx3A LINE L1 -16 6965 6575 3 1653 1552 247 40 80 chr3 140027873 140028479 -19571304 + Lx9 LINE L1 5278 5893 -1751 3 1653 649 357 109 19 chr3 140030222 140030533 -19569250 + ORR1E LTR MaLR 11 349 -10 3 1653 202 216 0 0 chr3 140030613 140030664 -19569119 + (TTTA)n Simple_repeat Simple_repeat 2 52 0 4 1653 664 159 7 55 chr3 140030665 140030811 -19568972 - Lx LINE L1 -3 6651 6513 4 1653 985 101 0 0 chr3 140030811 140030950 -19568833 + L1_Mus4 LINE L1 5761 5899 -737 4 1653 401 0 20 0 chr3 140030950 140030999 -19568784 + (TTTA)n Simple_repeat Simple_repeat 1 50 0 4 1653 1223 163 10 0 chr3 140031006 140031208 -19568575 - Lx3A LINE L1 -25 6956 6753 4 1653 264 309 50 40 chr3 140031502 140031603 -19568180 + MTEa LTR MaLR 274 375 -4 4 1653 343 332 104 43 chr3 140032013 140032293 -19567490 - L1MC4 LINE L1 -939 7103 6807 4 1653 228 234 21 0 chr3 140032412 140032459 -19567324 + GA-rich Low_complexity Low_complexity 1 48 0 4 1653 1625 197 16 3 chr3 140032667 140032972 -19566811 - RLTR27 LTR ERVK 0 309 1 4 1653 30 27 0 0 chr3 140033363 140033400 -19566383 + AT_rich Low_complexity Low_complexity 1 37 0 4 1653 236 154 12 60 chr3 140033442 140033525 -19566258 + (TA)n Simple_repeat Simple_repeat 2 80 0 5 1653 1641 169 43 3 chr3 140034620 140034923 -19564860 - ORR1A4 LTR MaLR -14 315 1 5 1653 26 30 0 0 chr3 140035442 140035475 -19564308 + AT_rich Low_complexity Low_complexity 1 33 0 5 1653 992 289 68 31 chr3 140035564 140035917 -19563866 - L1_Mur3 LINE L1 -64 5816 5451 5 1653 595 99 20 0 chr3 140035927 140036028 -19563755 + (TCTA)n Simple_repeat Simple_repeat 1 103 0 5 1653 960 261 63 0 chr3 140036034 140036200 -19563583 - Lx6 LINE L1 -29 7431 7252 5 1653 207 100 0 0 chr3 140036200 140036230 -19563553 + (TA)n Simple_repeat Simple_repeat 2 31 0 5 1653 960 261 63 0 chr3 140036230 140036331 -19563452 - Lx6 LINE L1 -209 7251 7148 5 1653 987 142 81 24 chr3 140036332 140036423 -19563360 + Lx LINE L1 6430 6518 -136 5 1653 180 0 0 0 chr3 140036423 140036443 -19563340 + (TGGG)n Simple_repeat Simple_repeat 2 21 0 5 1653 987 142 81 24 chr3 140036443 140036560 -19563223 + Lx LINE L1 6519 6649 -5 5 1653 1234 314 47 15 chr3 140036611 140037265 -19562518 - Lx6 LINE L1 -733 6727 5812 5 1653 195 42 0 0 chr3 140037281 140037305 -19562478 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 5 1653 3828 117 33 7 chr3 140037324 140037927 -19561856 - Lx LINE L1 -12 6642 6024 6 1653 279 128 0 0 chr3 140037927 140037969 -19561814 + Lx3A LINE L1 6604 6645 -336 6 1653 4585 215 37 12 chr3 140037968 140038013 -19561770 + L1_Mur3 LINE L1 4323 4368 -1512 6 1653 396 0 0 0 chr3 140038013 140038057 -19561726 + (TA)n Simple_repeat Simple_repeat 2 45 0 6 1653 4585 215 37 12 chr3 140038057 140039118 -19560665 + L1_Mur3 LINE L1 4369 5456 -424 6 1653 243 32 0 0 chr3 140039119 140039150 -19560633 + RMER19C LTR ERVK 581 611 0 6 1653 22 0 0 0 chr3 140039379 140039401 -19560382 + AT_rich Low_complexity Low_complexity 1 22 0 6 1653 782 200 0 0 chr3 140039449 140039574 -19560209 + B3 SINE B2 2 126 -90 6 1653 2573 110 18 0 chr3 140039614 140039995 -19559788 + L1_Mur1 LINE L1 5178 5565 -321 6 1653 2741 30 0 45 chr3 140039995 140040348 -19559435 - IAPLTR1a_Mm LTR ERVK 0 337 1 6 1653 55334 23 18 3 chr3 140040348 140046727 -19553056 - IAPEz-int LTR ERVK 0 6481 8 6 1653 2741 30 0 45 chr3 140046727 140047080 -19552703 - IAPLTR1a_Mm LTR ERVK 0 337 1 6 1653 1637 117 17 0 chr3 140047080 140047319 -19552464 + L1_Mur1 LINE L1 5560 5802 -84 6 1653 1370 166 45 4 chr3 140047322 140047564 -19552219 + Lx3A LINE L1 6720 6971 -10 6 1653 7939 33 0 1 chr3 140047567 140048508 -19551275 + L1Md_F2 LINE L1 5640 6579 -3 6 1653 29 0 0 0 chr3 140048508 140048537 -19551246 + AT_rich Low_complexity Low_complexity 1 29 0 7 1653 493 15 30 0 chr3 140049188 140049254 -19550529 + (TA)n Simple_repeat Simple_repeat 2 69 0 7 1653 267 429 65 19 chr3 140050260 140050476 -19549307 + B4 SINE B4 63 288 -4 7 1653 22 56 0 0 chr3 140051202 140051238 -19548545 + AT_rich Low_complexity Low_complexity 1 36 0 7 1653 1087 82 0 33 chr3 140052688 140052840 -19546943 - B1_Mus1 SINE Alu 0 148 2 7 1653 4096 61 2 0 chr3 140053179 140053701 -19546082 + L1_Mus3 LINE L1 5591 6113 -525 7 1653 501 340 25 6 chr3 140053902 140054059 -19545724 - B3A SINE B2 -38 160 1 7 1653 10972 107 62 2 chr3 140054846 140056178 -19543605 - L1_Mus3 LINE L1 -8 6630 5221 7 1653 503 16 0 15 chr3 140056178 140056243 -19543540 + (TA)n Simple_repeat Simple_repeat 2 65 0 7 1653 27577 144 23 16 chr3 140056243 140061170 -19538613 - L1_Mus3 LINE L1 -663 5220 254 7 1653 29 28 0 0 chr3 140061324 140061360 -19538423 + AT_rich Low_complexity Low_complexity 1 36 0 7 1653 22 56 0 0 chr3 140061447 140061483 -19538300 + AT_rich Low_complexity Low_complexity 1 36 0 8 1653 3221 129 29 15 chr3 140062101 140062693 -19537090 + Lx4B LINE L1 4323 4922 -955 8 1653 355 164 0 52 chr3 140062678 140062755 -19537028 + Lx4B LINE L1 5726 5798 -1260 8 1653 1038 103 0 0 chr3 140062755 140062901 -19536882 + B1_Mus1 SINE Alu 3 148 0 8 1653 239 50 0 48 chr3 140062901 140062943 -19536840 + (CAAAA)n Simple_repeat Simple_repeat 2 41 0 8 1653 5284 216 54 17 chr3 140062943 140064166 -19535617 + Lx4B LINE L1 5785 7052 -6 8 1653 1336 314 36 24 chr3 140064518 140064968 -19534815 + MT2A LTR ERVL 5 459 -74 8 1653 450 0 0 0 chr3 140064969 140065019 -19534764 + (CA)n Simple_repeat Simple_repeat 1 50 0 8 1653 483 60 0 0 chr3 140065038 140065105 -19534678 + (CAGA)n Simple_repeat Simple_repeat 2 68 0 8 1653 312 304 74 25 chr3 140067416 140067578 -19532205 + L1MC3 LINE L1 6064 6233 -1552 8 1653 242 106 21 0 chr3 140067853 140067900 -19531883 + (TTTA)n Simple_repeat Simple_repeat 1 48 0 8 1653 7438 132 15 122 chr3 140067901 140069415 -19530368 - Lx3A LINE L1 -11 6970 5619 8 1653 493 139 52 61 chr3 140069395 140069510 -19530273 - Lx3A LINE L1 -616 5270 5157 8 1653 316 181 24 0 chr3 140069705 140069788 -19529995 + (TG)n Simple_repeat Simple_repeat 2 86 0 9 1653 6246 138 32 3 chr3 140070172 140071735 -19528048 - Lx LINE L1 -116 6538 4937 9 1653 24 0 0 0 chr3 140071923 140071947 -19527836 + AT_rich Low_complexity Low_complexity 1 24 0 9 1653 24 53 0 0 chr3 140073124 140073162 -19526621 + AT_rich Low_complexity Low_complexity 1 38 0 9 1653 1188 26 19 0 chr3 140076099 140076255 -19523528 + (TCTCCC)n Simple_repeat Simple_repeat 6 164 0 9 1653 254 206 0 14 chr3 140076257 140076326 -19523457 + CT-rich Low_complexity Low_complexity 1 68 0 9 1653 382 319 0 0 chr3 140076347 140076441 -19523342 - ID_B1 SINE B4 -27 197 104 9 1653 524 107 13 0 chr3 140076599 140076674 -19523109 + BGLII LTR ERVK 1 76 -345 9 1653 920 90 0 0 chr3 140076669 140076791 -19522992 + BGLII LTR ERVK 300 421 0 9 1653 32 0 0 0 chr3 140077069 140077101 -19522682 + AT_rich Low_complexity Low_complexity 1 32 0 9 1653 225 94 0 0 chr3 140079834 140079866 -19519917 + (TG)n Simple_repeat Simple_repeat 1 32 0 9 1653 697 275 44 0 chr3 140079868 140080028 -19519755 - B3A SINE B2 -24 174 8 1 1653 423 0 0 0 chr3 140080562 140080609 -19519174 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 1653 243 280 75 60 chr3 140081468 140081601 -19518182 - YREP_Mm Unknown Unknown -1491 321 187 1 1653 5054 44 0 16 chr3 140081629 140082258 -19517525 + L1Md_F2 LINE L1 5956 6574 -8 1 1653 404 260 81 0 chr3 140082361 140082484 -19517299 + B1_Mur1 SINE Alu 5 137 -12 1 1653 216 0 0 0 chr3 140082568 140082592 -19517191 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 1 1653 278 323 10 40 chr3 140083050 140083150 -19516633 + PB1D10 SINE Alu 12 108 -9 1 1653 651 26 0 0 chr3 140083163 140083240 -19516543 + (GA)n Simple_repeat Simple_repeat 2 78 0 1 1653 260 27 27 0 chr3 140083780 140083817 -19515966 + (CAAAC)n Simple_repeat Simple_repeat 2 39 0 1 1653 24 0 0 0 chr3 140084675 140084699 -19515084 + AT_rich Low_complexity Low_complexity 1 24 0 1 1653 373 350 53 15 chr3 140086498 140086789 -19512994 - ERVL-E-int LTR ERVL -1806 3908 3604 1 1653 2689 204 83 14 chr3 140087077 140087667 -19512116 + Lx4B LINE L1 6353 6983 -75 1 1653 831 95 7 20 chr3 140087702 140087853 -19511930 + (TAGA)n Simple_repeat Simple_repeat 2 150 0 1 1653 252 86 0 0 chr3 140087980 140088015 -19511768 + (T)n Simple_repeat Simple_repeat 1 35 0 1 1653 1101 95 0 0 chr3 140088015 140088162 -19511621 - B1_Mus2 SINE Alu 0 147 1 1 1653 186 118 0 0 chr3 140089232 140089266 -19510517 + (TTTA)n Simple_repeat Simple_repeat 4 37 0 1 1653 33 43 0 0 chr3 140089585 140089632 -19510151 + AT_rich Low_complexity Low_complexity 1 47 0 1 1653 3676 130 5 30 chr3 140089700 140089727 -19510056 - MT2B2 LTR ERVL -5 579 553 1 1653 189 0 0 0 chr3 140089727 140089748 -19510035 + (TTTC)n Simple_repeat Simple_repeat 1 21 0 1 1653 330 87 0 0 chr3 140089748 140089794 -19509989 + (TTCA)n Simple_repeat Simple_repeat 3 48 0 1 1653 1066 90 7 0 chr3 140089795 140089939 -19509844 - B1_Mus1 SINE Alu -1 147 3 1 1653 3676 130 5 30 chr3 140089939 140090502 -19509281 - MT2B2 LTR ERVL -32 552 2 1 1653 26 0 0 0 chr3 140090869 140090895 -19508888 + AT_rich Low_complexity Low_complexity 1 26 0 1 1653 520 292 7 20 chr3 140091479 140091608 -19508175 + B1_Mur4 SINE Alu 6 135 -15 1 1653 471 35 0 0 chr3 140091608 140091665 -19508118 + (TAAA)n Simple_repeat Simple_repeat 4 60 0 1 1653 520 292 7 20 chr3 140091665 140091682 -19508101 + B1_Mur4 SINE Alu 136 150 0 1 1653 2568 191 45 28 chr3 140091682 140092070 -19507713 + Lx6 LINE L1 5288 5683 -197 1 1653 3840 121 5 2 chr3 140092070 140092642 -19507141 + Lx LINE L1 6073 6646 -8 1 1653 2568 252 82 16 chr3 140092642 140093313 -19506470 + Lx6 LINE L1 5671 6405 -1055 1 1653 475 301 54 77 chr3 140093324 140093673 -19506110 - RLTR15 LTR ERVK -18 341 1 1 1653 925 291 43 36 chr3 140093709 140093783 -19506000 + Lx6 LINE L1 6813 6895 -565 1 1653 1167 26 6 13 chr3 140093783 140093940 -19505843 + (GA)n Simple_repeat Simple_repeat 2 157 0 1 1653 925 291 43 36 chr3 140093940 140094168 -19505615 + Lx6 LINE L1 6896 7117 -343 1 1653 261 140 0 0 chr3 140094170 140094227 -19505556 + (TCTG)n Simple_repeat Simple_repeat 2 58 0 1 1653 1088 128 0 6 chr3 140094273 140094453 -19505330 + (TTC)n Simple_repeat Simple_repeat 1 179 0 1 1653 219 139 0 0 chr3 140094453 140094489 -19505294 + (TCC)n Simple_repeat Simple_repeat 2 37 0 1 1653 553 226 66 42 chr3 140094492 140094658 -19505125 - Lx6 LINE L1 -708 6752 6583 1 1653 744 71 0 0 chr3 140094658 140094757 -19505026 + (TA)n Simple_repeat Simple_repeat 2 100 0 1 1653 1057 224 102 7 chr3 140094762 140095036 -19504747 + Lx6 LINE L1 7131 7430 -30 1 1653 1616 67 0 0 chr3 140095053 140095263 -19504520 + L1Md_T LINE L1 6373 6582 0 1 1653 27 0 0 0 chr3 140095267 140095294 -19504489 + AT_rich Low_complexity Low_complexity 1 27 0 1 1653 201 121 0 0 chr3 140095297 140095330 -19504453 + (TAAA)n Simple_repeat Simple_repeat 2 34 0 1 1653 7494 60 1 1 chr3 140096277 140097215 -19502568 - L1_Mus2 LINE L1 -1 6565 5628 1 1653 261 57 0 0 chr3 140098074 140098109 -19501674 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1 1653 257 286 61 10 chr3 140098183 140098244 -19501539 + Lx9 LINE L1 7360 7420 -224 1 1653 627 39 0 0 chr3 140098244 140098322 -19501461 + (CA)n Simple_repeat Simple_repeat 2 79 0 1 1653 257 286 61 10 chr3 140098322 140098359 -19501424 + Lx9 LINE L1 7421 7462 -182 1 1653 354 23 0 0 chr3 140098359 140098402 -19501381 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 1653 198 0 0 0 chr3 140099436 140099458 -19500325 + (TTTG)n Simple_repeat Simple_repeat 3 24 0 1 1653 236 378 71 11 chr3 140100993 140101175 -19498608 - Tigger7 DNA MER2_type -2078 413 221 1 1653 909 302 144 3 chr3 140101188 140101527 -19498256 - MTD LTR MaLR -15 404 18 1 1653 329 316 132 41 chr3 140101515 140101751 -19498032 - Tigger7 DNA MER2_type -2235 256 2 1 1653 717 114 0 0 chr3 140102685 140102799 -19496984 + (CA)n Simple_repeat Simple_repeat 2 115 0 1 1653 238 370 0 0 chr3 140103297 140103378 -19496405 + B4A SINE B4 5 85 -207 1 1653 198 91 0 0 chr3 140103674 140103707 -19496076 + (GA)n Simple_repeat Simple_repeat 2 34 0 1 1653 203 184 0 0 chr3 140105159 140105197 -19494586 + A-rich Low_complexity Low_complexity 1 38 0 1 1653 657 164 8 45 chr3 140105479 140105613 -19494170 - RMER17C-int LTR ERVK -691 2547 2419 1 1653 342 238 12 6 chr3 140105725 140105886 -19493897 + GA-rich Low_complexity Low_complexity 2 163 0 1 1653 528 16 0 0 chr3 140105911 140105972 -19493811 + (TTTTC)n Simple_repeat Simple_repeat 4 64 0 1 1653 731 111 39 8 chr3 140105979 140106106 -19493677 - L1_Mus1 LINE L1 0 6567 6437 1 1653 278 82 157 39 chr3 140106106 140106149 -19493634 + L1_Mus1 LINE L1 6259 6309 -258 1 1653 2934 222 104 123 chr3 140106243 140106851 -19492932 - RLTR19-int LTR ERVK -2461 3676 3235 1 1653 269 259 37 12 chr3 140106851 140106933 -19492850 + LSU-rRNA_Hsa rRNA rRNA 4170 4253 -782 1 1653 2934 222 104 123 chr3 140106933 140108325 -19491458 - RLTR19-int LTR ERVK -2461 3234 2223 1 1653 1736 252 27 53 chr3 140108446 140108933 -19490850 - RMER19C LTR ERVK 0 611 138 1 1653 312 297 65 45 chr3 140109103 140109258 -19490525 - RLTR14 LTR ERV1 0 382 225 1 1653 527 328 22 11 chr3 140109595 140109777 -19490006 + ID_B1 SINE B4 6 189 -35 1 1653 378 0 0 0 chr3 140112360 140112402 -19487381 + (TG)n Simple_repeat Simple_repeat 1 42 0 1 1653 228 242 119 15 chr3 140112847 140112914 -19486869 + ID4 SINE ID 9 82 -1 1 1653 935 259 14 5 chr3 140114180 140114393 -19485390 + B3 SINE B2 2 216 0 1 1653 186 118 0 0 chr3 140115292 140115326 -19484457 + (CA)n Simple_repeat Simple_repeat 2 35 0 1 1653 453 19 0 0 chr3 140115326 140115380 -19484403 + (GA)n Simple_repeat Simple_repeat 1 54 0 1 1653 407 315 183 9 chr3 140115572 140115796 -19483987 - RMER15 LTR ERVL -14 561 299 1 206 6660 183 22 24 chr3 140115917 140117551 -19482232 - Lx2B LINE L1 -10 6990 5341 1 1654 742 103 0 0 chr3 140117554 140117670 -19482113 - L1_Mus1 LINE L1 0 6567 6452 1 1654 1528 142 36 7 chr3 140117667 140117943 -19481840 - Lx2B LINE L1 -522 5355 5072 1 1654 1036 168 17 54 chr3 140117943 140118182 -19481601 + Lx2B LINE L1 4833 5071 -815 1 1654 185 83 28 0 chr3 140118285 140118321 -19481462 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 1 1654 878 272 37 144 chr3 140118321 140118695 -19481088 - MTE2a LTR MaLR -37 342 9 1 1654 1492 255 41 9 chr3 140118878 140119218 -19480565 + MTC LTR MaLR 1 351 -70 1 1654 490 298 38 100 chr3 140119234 140119473 -19480310 - MTD-int LTR MaLR -277 1303 1080 1 1654 627 284 188 110 chr3 140119466 140120031 -19479752 - MTD-int LTR MaLR -649 609 1 1 1654 603 351 65 22 chr3 140120032 140120423 -19479360 - MTD LTR MaLR -31 388 3 1 1654 39 38 0 0 chr3 140120505 140120558 -19479225 + AT_rich Low_complexity Low_complexity 1 53 0 1 1654 28 29 0 0 chr3 140120921 140120956 -19478827 + AT_rich Low_complexity Low_complexity 1 35 0 1 1654 989 128 0 0 chr3 140120992 140121133 -19478650 + B1_Mus1 SINE Alu 1 141 -7 1 1654 22 0 0 0 chr3 140121773 140121795 -19477988 + AT_rich Low_complexity Low_complexity 1 22 0 1 1654 25 75 0 0 chr3 140122597 140122650 -19477133 + AT_rich Low_complexity Low_complexity 1 53 0 1 1654 333 0 0 0 chr3 140122979 140123016 -19476767 + (TG)n Simple_repeat Simple_repeat 1 37 0 1 1654 495 0 0 0 chr3 140123016 140123070 -19476713 + (GA)n Simple_repeat Simple_repeat 1 55 0 1 1654 1973 254 47 72 chr3 140123072 140123835 -19475948 - L1_Mur3 LINE L1 -1607 4273 3530 1 1654 2107 278 33 39 chr3 140124196 140124833 -19474950 + Lx6 LINE L1 6828 7460 0 1 1654 307 373 35 17 chr3 140125597 140125769 -19474014 - MER2 DNA MER2_type -6 339 165 1 1654 487 398 64 0 chr3 140126051 140126287 -19473496 + MER54B LTR ERVL 503 753 -40 1 1654 381 326 166 35 chr3 140126548 140126837 -19472946 + MER89 LTR ERV1 230 556 -3 1 1654 407 363 11 4 chr3 140127374 140127521 -19472262 + ID_B1 SINE B4 73 216 -8 1 1654 269 51 26 0 chr3 140127696 140127735 -19472048 + (TAA)n Simple_repeat Simple_repeat 1 40 0 1 1654 355 188 47 0 chr3 140127736 140127800 -19471983 + MTC LTR MaLR 84 150 -271 1 1654 6412 212 26 13 chr3 140127808 140129799 -19469984 - Lx5 LINE L1 -22 7028 5003 1 1654 529 130 0 0 chr3 140129801 140129878 -19469905 + RMER13B LTR ERVK 1 77 -831 1 1654 1637 173 11 84 chr3 140129877 140130236 -19469547 + RMER13B LTR ERVK 286 618 -290 1 1654 449 130 37 65 chr3 140130236 140130343 -19469440 - Lx5 LINE L1 -1203 4674 4571 1 1654 1087 224 111 42 chr3 140130379 140130668 -19469115 + RMER13B LTR ERVK 600 908 0 1 1654 1620 227 35 16 chr3 140130670 140131096 -19468687 - L1_Mur3 LINE L1 -873 5004 4571 1 1654 1967 293 29 29 chr3 140131091 140131710 -19468073 - Lx5 LINE L1 -390 6660 6042 1 1654 6247 195 72 78 chr3 140131713 140133089 -19466694 - L1_Mur3 LINE L1 -2461 3416 2040 1 1654 419 0 20 0 chr3 140133089 140133140 -19466643 + (TG)n Simple_repeat Simple_repeat 1 52 0 1 1654 6247 195 72 78 chr3 140133140 140133574 -19466209 - L1_Mur3 LINE L1 -3838 2039 1617 1 1654 1086 269 37 39 chr3 140134053 140134545 -19465238 - L1_Mur3 LINE L1 -6425 1303 813 1 1654 21 36 0 0 chr3 140136160 140136188 -19463595 + AT_rich Low_complexity Low_complexity 1 28 0 1 1654 214 343 57 0 chr3 140136250 140136320 -19463463 + B3A SINE B2 4 77 -121 1 1654 264 336 77 77 chr3 140136634 140136789 -19462994 + MLT2C1 LTR ERVL 152 306 -91 1 1654 198 91 0 0 chr3 140136791 140136824 -19462959 + (TCTG)n Simple_repeat Simple_repeat 2 34 0 1 1654 217 250 0 88 chr3 140136901 140136958 -19462825 + ID_B1 SINE B4 78 129 -95 1 1654 239 71 24 0 chr3 140137682 140137724 -19462059 + (CAAAAA)n Simple_repeat Simple_repeat 2 44 0 1 1654 468 0 0 0 chr3 140139857 140139909 -19459874 + (TG)n Simple_repeat Simple_repeat 2 53 0 1 1654 729 265 129 38 chr3 140142674 140143047 -19456736 - L1_Mur3 LINE L1 -2882 2998 2592 1 1654 953 305 76 44 chr3 140143840 140144207 -19455576 + MTE2a LTR MaLR 1 379 0 1 1654 248 0 31 0 chr3 140144588 140144620 -19455163 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 2 1654 1134 146 73 0 chr3 140144626 140144832 -19454951 - Lx2 LINE L1 0 6997 6777 2 1654 1196 296 79 24 chr3 140145324 140145878 -19453905 - HERVL74-int LTR ERVL -3817 1868 1284 2 1654 27 62 0 0 chr3 140145998 140146046 -19453737 + AT_rich Low_complexity Low_complexity 1 48 0 2 1654 278 232 53 12 chr3 140146063 140146233 -19453550 + (TA)n Simple_repeat Simple_repeat 2 178 0 2 1654 215 273 0 0 chr3 140146260 140146326 -19453457 + (TG)n Simple_repeat Simple_repeat 2 67 0 2 1654 5267 171 64 14 chr3 140146694 140146776 -19453007 - Lx4A LINE L1 -1 7057 6979 2 1654 2364 62 66 27 chr3 140146776 140147109 -19452674 + ORR1A1 LTR MaLR 1 346 0 2 1654 5267 171 64 14 chr3 140147109 140148075 -19451708 - Lx4A LINE L1 -80 6978 5957 2 1654 462 214 61 0 chr3 140148173 140148271 -19451512 + Lx2 LINE L1 6089 6192 -805 2 1654 28 48 0 0 chr3 140148418 140148460 -19451323 + AT_rich Low_complexity Low_complexity 1 42 0 2 1654 180 310 81 40 chr3 140148882 140149030 -19450753 - L2a LINE L2 0 3426 3273 2 1654 25 31 0 0 chr3 140149073 140149105 -19450678 + AT_rich Low_complexity Low_complexity 1 32 0 2 1654 723 221 110 28 chr3 140150256 140150523 -19449260 + ORR1A4 LTR MaLR 10 276 -53 2 1654 238 224 0 0 chr3 140152600 140152649 -19447134 + (TA)n Simple_repeat Simple_repeat 2 50 0 2 1654 32 20 0 20 chr3 140152726 140152760 -19447023 + AT_rich Low_complexity Low_complexity 1 34 0 2 1654 2156 120 28 39 chr3 140152760 140153116 -19446667 - Lx3A LINE L1 -3 6978 6627 2 1654 32 20 0 20 chr3 140153116 140153131 -19446652 + AT_rich Low_complexity Low_complexity 1 15 0 2 1654 11220 128 24 27 chr3 140153146 140155437 -19444346 - Lx3B LINE L1 -13 6960 4723 2 1654 464 117 13 0 chr3 140155437 140155514 -19444269 + (CAGTA)n Simple_repeat Simple_repeat 3 80 0 2 1654 11220 122 38 23 chr3 140155514 140156243 -19443540 - Lx3B LINE L1 -1164 4722 3954 2 1654 321 269 128 44 chr3 140156301 140156627 -19443156 + L1MA4 LINE L1 5576 5935 -377 2 1654 320 194 119 0 chr3 140157908 140158042 -19441741 - Lx9 LINE L1 -2 7642 7493 2 1654 396 55 0 0 chr3 140158136 140158191 -19441592 + (TG)n Simple_repeat Simple_repeat 2 56 0 2 1654 704 255 29 34 chr3 140158194 140158401 -19441382 - Lx9 LINE L1 -179 7465 7260 2 1654 22 0 0 0 chr3 140158484 140158506 -19441277 + AT_rich Low_complexity Low_complexity 1 22 0 2 1654 406 95 42 10 chr3 140158837 140158933 -19440850 + (TA)n Simple_repeat Simple_repeat 2 100 0 2 1654 502 297 46 67 chr3 140160075 140160270 -19439513 + B3A SINE B2 1 191 -7 2 1654 180 0 0 0 chr3 140160521 140160541 -19439242 + (TTAA)n Simple_repeat Simple_repeat 3 22 0 2 1654 1958 74 67 0 chr3 140160715 140161000 -19438783 - L1_Mus3 LINE L1 0 6638 6335 2 1654 10334 195 107 16 chr3 140160995 140164259 -19435524 - Lx5 LINE L1 -762 6288 2050 2 1654 423 0 0 0 chr3 140164259 140164306 -19435477 + (TG)n Simple_repeat Simple_repeat 2 48 0 2 1654 8468 227 290 27 chr3 140164306 140164922 -19434861 - Lx5 LINE L1 -3837 2049 1420 2 1654 207 0 0 0 chr3 140164922 140164945 -19434838 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2 1654 8468 227 290 27 chr3 140164945 140165122 -19434661 - Lx5 LINE L1 -4467 1419 1262 2 1654 468 77 0 0 chr3 140165122 140165187 -19434596 + (TG)n Simple_repeat Simple_repeat 1 65 0 2 1654 8468 251 154 12 chr3 140165187 140165845 -19433938 - Lx5 LINE L1 -5825 1261 507 2 1654 9463 10 0 0 chr3 140166248 140168027 -19431756 - L1Md_T LINE L1 -1 6581 4803 2 1654 221 234 0 0 chr3 140168246 140168293 -19431490 + GA-rich Low_complexity Low_complexity 2 48 0 2 1654 216 0 0 0 chr3 140171431 140171455 -19428328 + (TTGG)n Simple_repeat Simple_repeat 4 27 0 2 1654 264 364 0 10 chr3 140171649 140171749 -19428034 - L2c LINE L2 -44 3343 3245 2 1654 237 65 0 0 chr3 140172077 140172108 -19427675 + (CAGTT)n Simple_repeat Simple_repeat 4 34 0 2 1654 499 317 18 160 chr3 140172135 140172522 -19427261 - MER21B LTR ERV1 -209 654 323 2 1654 202 250 0 0 chr3 140172657 140172701 -19427082 + (TA)n Simple_repeat Simple_repeat 1 44 0 2 1654 894 308 179 17 chr3 140173719 140174195 -19425588 + Lx8 LINE L1 6800 7352 -121 2 1654 246 95 0 0 chr3 140175020 140175062 -19424721 + (CCAA)n Simple_repeat Simple_repeat 2 43 0 2 1654 35184 49 0 1 chr3 140175417 140180901 -19418882 + L1Md_T LINE L1 14 5589 -297 2 1654 8358 35 0 1 chr3 140180901 140181898 -19417885 + L1Md_T LINE L1 5590 6585 0 2 1654 429 226 19 5 chr3 140182336 140182441 -19417342 - B3A SINE B2 -88 107 6 2 1654 1611 195 96 3 chr3 140182488 140182823 -19416960 + ORR1B2 LTR MaLR 1 366 -1 2 1654 650 296 31 18 chr3 140183152 140183379 -19416404 - Lx6 LINE L1 -11 7449 7220 2 1654 1176 316 42 14 chr3 140183350 140183405 -19416378 - Lx6 LINE L1 -164 7296 7245 2 1654 423 0 0 0 chr3 140183405 140183452 -19416331 + (TG)n Simple_repeat Simple_repeat 2 48 0 2 1654 1176 316 42 14 chr3 140183452 140183749 -19416034 - Lx6 LINE L1 -216 7244 6934 2 1654 285 321 30 0 chr3 140184032 140184163 -19415620 - L1M4b LINE L1 -4907 2427 2293 2 1654 444 284 144 18 chr3 140185479 140185867 -19413916 + L1ME1 LINE L1 5504 5940 -239 2 1654 4841 168 92 4 chr3 140186314 140187217 -19412566 + Lx4A LINE L1 6059 7040 -18 2 1654 185 65 32 0 chr3 140187217 140187248 -19412535 + (TAA)n Simple_repeat Simple_repeat 2 33 0 2 1654 438 245 4 12 chr3 140187567 140187821 -19411962 + CT-rich Low_complexity Low_complexity 1 251 0 2 1654 273 277 52 78 chr3 140187827 140187980 -19411803 - Lx6 LINE L1 0 7460 7312 2 1654 6927 96 85 9 chr3 140188172 140189469 -19410314 - L1_Mus3 LINE L1 -3 6635 5239 2 1654 417 39 0 0 chr3 140189469 140189520 -19410263 + (TA)n Simple_repeat Simple_repeat 2 52 0 2 1654 6927 131 47 1 chr3 140189520 140189998 -19409785 - L1_Mus3 LINE L1 -645 5238 4738 2 1654 358 342 0 49 chr3 140190363 140190486 -19409297 - RSINE1 SINE B4 0 165 49 2 1654 195 312 15 59 chr3 140190578 140190646 -19409137 + MIRm SINE MIR 99 163 -113 2 1654 24 32 0 0 chr3 140192065 140192096 -19407687 + AT_rich Low_complexity Low_complexity 1 31 0 2 1654 2977 119 11 27 chr3 140193167 140193643 -19406140 - L1_Mus3 LINE L1 -8 6630 6163 2 1654 243 325 77 30 chr3 140194942 140195110 -19404673 + MLT1N2 LTR MaLR 387 562 0 2 1654 214 51 24 49 chr3 140195704 140195745 -19404038 + (TTTTG)n Simple_repeat Simple_repeat 1 40 0 2 1654 4237 60 0 0 chr3 140195804 140196337 -19403446 - L1_Mus1 LINE L1 0 6567 6035 2 1654 701 334 59 91 chr3 140196360 140197227 -19402556 - Lx8 LINE L1 -28 7445 6607 2 1654 273 281 12 12 chr3 140197240 140197323 -19402460 + Lx8 LINE L1 6476 6558 -915 2 1654 4779 176 67 10 chr3 140197448 140198409 -19401374 - Lx2 LINE L1 -1 6996 5982 2 1654 1031 130 0 6 chr3 140198410 140198572 -19401211 - L1_Mur1 LINE L1 -730 5156 4996 2 1654 1045 109 0 0 chr3 140198661 140198808 -19400975 + B1_Mus1 SINE Alu 2 148 0 2 1654 258 32 0 0 chr3 140198821 140198852 -19400931 + (CCAA)n Simple_repeat Simple_repeat 2 32 0 2 1654 212 77 0 25 chr3 140198884 140198924 -19400859 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 2 1654 358 292 8 74 chr3 140199166 140199288 -19400495 - PB1D9 SINE Alu 0 120 7 2 1654 516 105 0 0 chr3 140199882 140199958 -19399825 + (TA)n Simple_repeat Simple_repeat 2 77 0 2 1654 542 333 19 0 chr3 140200605 140200764 -19399019 - Lx9 LINE L1 -1017 6627 6466 2 1654 227 333 11 11 chr3 140200769 140200857 -19398926 + ORR1E LTR MaLR 43 130 -229 2 1654 4158 75 1 0 chr3 140201120 140201770 -19398013 - L1Md_A LINE L1 -4114 1769 1119 2 1654 2943 171 75 11 chr3 140203433 140203886 -19395897 + L1_Mur2 LINE L1 175 658 -6054 2 1654 378 0 0 0 chr3 140203886 140203928 -19395855 + (CA)n Simple_repeat Simple_repeat 2 43 0 2 1654 2943 171 75 11 chr3 140203928 140204034 -19395749 + L1_Mur2 LINE L1 659 769 -5943 2 1654 183 129 0 0 chr3 140204042 140204073 -19395710 + (CA)n Simple_repeat Simple_repeat 2 32 0 2 1654 31 26 0 0 chr3 140204100 140204138 -19395645 + AT_rich Low_complexity Low_complexity 1 38 0 2 1654 180 77 0 0 chr3 140204602 140204628 -19395155 + (CATTA)n Simple_repeat Simple_repeat 4 29 0 2 1654 230 308 50 82 chr3 140205595 140205754 -19394029 + LTR48 LTR ERV1 6 159 -628 2 1654 1677 210 13 37 chr3 140207097 140207473 -19392310 - ORR1B2 LTR MaLR 0 367 1 2 1654 234 160 0 0 chr3 140208580 140208630 -19391153 + (ATG)n Simple_repeat Simple_repeat 2 51 0 2 1654 342 0 0 0 chr3 140209150 140209188 -19390595 + (TG)n Simple_repeat Simple_repeat 1 38 0 2 1654 414 347 27 14 chr3 140209207 140209353 -19390430 - RSINE1 SINE B4 -3 162 15 2 1654 462 290 117 9 chr3 140209427 140209650 -19390133 + Lx9 LINE L1 7244 7490 -154 2 1654 1881 269 29 29 chr3 140209942 140210456 -19389327 + RMER15 LTR ERVL 44 557 -18 2 1654 327 361 32 0 chr3 140210938 140211093 -19388690 - HERV16-int LTR ERVL -3643 1353 1194 2 1654 646 369 20 37 chr3 140212261 140212559 -19387224 - MLT2D LTR ERVL -7 407 115 2 1654 4089 215 95 55 chr3 140212999 140214203 -19385580 + RLTR21 LTR ERVK 2 1253 -319 2 1654 314 253 0 11 chr3 140214249 140214429 -19385354 + (TG)n Simple_repeat Simple_repeat 2 179 0 2 1654 361 274 97 46 chr3 140214435 140214630 -19385153 + RMER12B LTR ERVK 1200 1404 0 2 1654 679 248 71 28 chr3 140214666 140214878 -19384905 - Lx2A1 LINE L1 -15 6993 6773 2 1654 2443 189 70 49 chr3 140215646 140216319 -19383464 - RMER6C LTR ERVK -3 687 1 2 1654 462 49 0 0 chr3 140217722 140217783 -19382000 + (TTTTG)n Simple_repeat Simple_repeat 1 61 0 2 1654 4171 267 37 4 chr3 140219945 140221063 -19378720 - Lx5 LINE L1 0 7050 5864 2 1654 945 275 68 9 chr3 140221075 140221423 -19378360 + Lx8 LINE L1 5498 5936 -364 2 1654 273 29 0 0 chr3 140221434 140221468 -19378315 + (T)n Simple_repeat Simple_repeat 1 34 0 2 1654 2221 178 155 45 chr3 140221613 140222231 -19377552 + RMER6C LTR ERVK 5 690 0 2 1654 21 0 0 0 chr3 140222401 140222422 -19377361 + AT_rich Low_complexity Low_complexity 1 21 0 2 1654 227 353 12 80 chr3 140222451 140222614 -19377169 + Lx8 LINE L1 6197 6348 -1125 2 1654 376 308 19 0 chr3 140222614 140222721 -19377062 + Lx8 LINE L1 6322 6430 -1043 2 1654 35 71 0 0 chr3 140222731 140222801 -19376982 + AT_rich Low_complexity Low_complexity 1 70 0 2 1654 1428 298 98 22 chr3 140222802 140223423 -19376360 + Lx8 LINE L1 6429 7096 -377 2 1654 4137 78 23 0 chr3 140223789 140224350 -19375433 + L1Md_F2 LINE L1 5012 5585 -298 2 1654 8235 40 1 1 chr3 140224351 140225344 -19374439 + L1Md_F2 LINE L1 5587 6579 -3 2 1654 23 0 0 0 chr3 140225356 140225379 -19374404 + AT_rich Low_complexity Low_complexity 1 23 0 2 1654 764 263 97 26 chr3 140225401 140225443 -19374340 - Lx9 LINE L1 -21 7623 7577 3 1654 489 110 0 0 chr3 140225443 140225516 -19374267 + (TA)n Simple_repeat Simple_repeat 1 73 0 3 1654 764 263 97 26 chr3 140225516 140225781 -19374002 - Lx9 LINE L1 -68 7576 7295 3 1654 262 289 139 38 chr3 140225787 140225842 -19373941 + MER110A LTR ERV1 86 153 -315 3 1654 3061 48 23 2 chr3 140225842 140226238 -19373545 + L1Md_F3 LINE L1 6180 6583 -1 3 1654 262 289 139 38 chr3 140226238 140226391 -19373392 + MER110A LTR ERV1 154 315 -153 3 1654 8348 135 52 17 chr3 140226745 140228669 -19371114 - Lx2 LINE L1 -1 6996 5264 3 1654 709 179 20 14 chr3 140228662 140228809 -19370974 - L1_Mur2 LINE L1 -573 5304 5157 3 1654 1746 46 5 0 chr3 140230512 140230730 -19369053 - L1Md_F2 LINE L1 -8 6574 6356 3 1654 5463 40 0 0 chr3 140230730 140231602 -19368181 - L1Md_F2 LINE L1 -356 6226 5355 3 1654 8926 78 5 18 chr3 140231604 140232852 -19366931 + L1Md_F2 LINE L1 4149 5380 -503 3 1654 891 311 127 9 chr3 140232875 140233206 -19366577 + ORR1D2 LTR MaLR 1 370 0 3 1654 2216 191 76 15 chr3 140233856 140233948 -19365835 - RLTR20B3 LTR ERVK 0 577 480 3 1654 441 0 0 0 chr3 140233948 140233997 -19365786 + (CA)n Simple_repeat Simple_repeat 2 50 0 3 1654 708 68 0 0 chr3 140233997 140234099 -19365684 + (GA)n Simple_repeat Simple_repeat 2 104 0 3 1654 2216 191 76 15 chr3 140234099 140234463 -19365320 - RLTR20B3 LTR ERVK -98 479 93 3 1654 1416 347 40 22 chr3 140234481 140235264 -19364519 + Lx9 LINE L1 6398 7194 -450 3 1654 400 110 108 14 chr3 140235875 140235949 -19363834 + B3 SINE B2 1 81 -135 3 1654 2734 79 0 0 chr3 140235949 140236315 -19363468 + L1_Mus3 LINE L1 5716 6081 -557 3 1654 598 128 0 8 chr3 140236328 140236446 -19363337 + L1_Mus4 LINE L1 6513 6629 -7 3 1654 1695 21 0 0 chr3 140237498 140237690 -19362093 + B2_Mm1a SINE B2 2 193 0 3 1654 215 334 47 21 chr3 140237814 140237979 -19361804 + MIRb SINE MIR 29 211 -57 3 1654 186 71 0 0 chr3 140238038 140238066 -19361717 + (T)n Simple_repeat Simple_repeat 1 28 0 3 1654 663 327 18 13 chr3 140238100 140238326 -19361457 + B4A SINE B4 1 227 -65 3 1654 246 138 68 17 chr3 140238363 140238422 -19361361 + Lx9 LINE L1 7397 7458 -186 3 1654 329 338 80 34 chr3 140238858 140239097 -19360686 - MER110 LTR ERV1 -194 297 48 3 1654 25 31 0 0 chr3 140239531 140239563 -19360220 + AT_rich Low_complexity Low_complexity 1 32 0 3 1654 235 235 147 0 chr3 140239563 140239665 -19360118 - Lx7 LINE L1 -2 7694 7578 3 1654 410 233 119 30 chr3 140239682 140239771 -19360012 - Lx7 LINE L1 -260 7436 7332 3 1654 249 83 0 0 chr3 140239771 140239807 -19359976 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 3 1654 410 233 119 30 chr3 140239807 140239885 -19359898 - Lx7 LINE L1 -365 7331 7255 3 1654 31 0 0 0 chr3 140239948 140239979 -19359804 + AT_rich Low_complexity Low_complexity 1 31 0 3 1654 306 0 0 0 chr3 140240057 140240091 -19359692 + (CA)n Simple_repeat Simple_repeat 1 34 0 3 1654 1097 88 5 105 chr3 140240894 140241085 -19358698 + B2_Mm2 SINE B2 1 172 -23 3 1654 652 314 60 44 chr3 140241097 140241414 -19358369 + MER2 DNA MER2_type 1 322 -23 3 1654 245 196 0 0 chr3 140241467 140241513 -19358270 + PB1D7 SINE Alu 8 53 -67 3 1654 250 45 0 43 chr3 140242313 140242359 -19357424 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 3 1654 589 188 237 13 chr3 140242702 140242858 -19356925 - RMER1C Other Other -24 1318 1128 3 1654 314 289 91 57 chr3 140242870 140243046 -19356737 + Lx5 LINE L1 6866 7047 -3 3 1654 364 235 12 0 chr3 140243055 140243140 -19356643 - RMER1C Other Other -215 1127 1042 3 1654 621 0 0 0 chr3 140243196 140243265 -19356518 + (TA)n Simple_repeat Simple_repeat 1 69 0 3 1654 365 285 86 41 chr3 140243490 140243735 -19356048 - Lx9 LINE L1 -92 7552 7297 3 1654 227 79 26 0 chr3 140243782 140243820 -19355963 + (TTATA)n Simple_repeat Simple_repeat 4 42 0 3 1654 1148 139 5 27 chr3 140244031 140244252 -19355531 - Lx2 LINE L1 0 6997 6782 3 1654 201 74 0 0 chr3 140244465 140244492 -19355291 + (TG)n Simple_repeat Simple_repeat 2 28 0 3 1654 23 0 0 0 chr3 140244811 140244834 -19354949 + AT_rich Low_complexity Low_complexity 1 23 0 3 1654 3537 93 4 10 chr3 140244914 140245442 -19354341 + L1_Mus1 LINE L1 6068 6567 0 3 1654 542 327 24 29 chr3 140245469 140245674 -19354109 - B3 SINE B2 -5 211 8 3 1654 609 217 80 0 chr3 140245731 140245869 -19353914 + B1_Mur4 SINE Alu 1 149 -1 3 1655 369 0 0 0 chr3 140247103 140247144 -19352639 + (CA)n Simple_repeat Simple_repeat 2 42 0 3 1655 347 231 284 7 chr3 140247308 140247456 -19352327 + MER3 DNA MER1_type 9 197 -12 3 1655 24 96 0 0 chr3 140247503 140247576 -19352207 + AT_rich Low_complexity Low_complexity 1 73 0 3 1655 197 374 73 18 chr3 140247960 140248069 -19351714 + MER5A DNA MER1_type 53 167 -22 3 1655 7273 91 4 0 chr3 140248419 140249820 -19349963 + L1Md_F2 LINE L1 5146 6553 -14 3 1655 28678 74 4 2 chr3 140249792 140252240 -19347543 + L1Md_F2 LINE L1 1693 4145 -1738 3 1655 7218 44 3 0 chr3 140252240 140253125 -19346658 + L1Md_T LINE L1 5695 6582 0 3 1655 28678 74 4 2 chr3 140253125 140254560 -19345223 + L1Md_F2 LINE L1 4146 5584 -299 3 1655 7705 65 2 0 chr3 140254562 140255556 -19344227 + L1Md_F2 LINE L1 5587 6582 0 3 1655 474 358 69 21 chr3 140255965 140256252 -19343531 + ORR1D2 LTR MaLR 1 309 -50 3 1655 25 65 0 0 chr3 140256265 140256311 -19343472 + AT_rich Low_complexity Low_complexity 1 46 0 3 1655 3158 175 32 29 chr3 140256580 140257173 -19342610 + MT2B LTR ERVL 7 601 0 3 1655 485 261 39 0 chr3 140257738 140257868 -19341915 + MLT2C1 LTR ERVL 1 135 -262 3 1655 494 307 63 18 chr3 140257951 140258173 -19341610 + MLT1-int LTR MaLR 46 277 -1094 3 1655 1364 175 410 17 chr3 140258267 140258519 -19341264 + RMER6C LTR ERVK 4 342 -348 3 1655 222 91 0 0 chr3 140258519 140258552 -19341231 + (CAGTG)n Simple_repeat Simple_repeat 2 34 0 3 1655 1364 219 223 78 chr3 140258552 140259003 -19340780 + RMER6C LTR ERVK 343 720 0 3 1655 1611 216 183 53 chr3 140260240 140260498 -19339285 + RMER6C LTR ERVK 6 335 -355 3 1655 612 0 0 0 chr3 140260498 140260566 -19339217 + (GA)n Simple_repeat Simple_repeat 1 68 0 3 1655 1611 216 183 53 chr3 140260566 140260913 -19338870 + RMER6C LTR ERVK 336 690 0 3 1655 1350 311 82 47 chr3 140261388 140262335 -19337448 + Charlie6 DNA MER1_type 133 2025 -1475 3 1655 6783 112 23 7 chr3 140262337 140264076 -19335707 + L1VL2 LINE L1 284 2040 -1575 3 1655 704 270 116 18 chr3 140264899 140265287 -19334496 - L1_Rod LINE L1 -1222 4625 4200 3 1655 8407 77 1 0 chr3 140265435 140266570 -19333213 - L1Md_F2 LINE L1 -2662 3221 2086 3 1655 17385 69 7 1 chr3 140266569 140268877 -19330906 + L1Md_F2 LINE L1 3265 5586 -297 3 1655 7889 59 0 0 chr3 140268877 140269863 -19329920 + L1Md_F2 LINE L1 5587 6572 -10 3 1655 1839 122 7 14 chr3 140270916 140271208 -19328575 - Lx LINE L1 -536 6118 5829 3 1655 3963 174 6 5 chr3 140271206 140271954 -19327829 + Lx6 LINE L1 4937 5683 -1777 3 1655 1575 241 97 10 chr3 140272002 140272404 -19327379 - Lx6 LINE L1 -11 7449 7013 3 1655 972 216 10 5 chr3 140272404 140272609 -19327174 - Lx LINE L1 -316 5570 5365 3 1655 325 272 199 15 chr3 140272650 140272851 -19326932 + Lx6 LINE L1 7203 7440 -20 3 1655 774 261 4 52 chr3 140272870 140273100 -19326683 + Lx6 LINE L1 5792 6010 -1450 3 1655 1131 64 0 0 chr3 140273186 140273326 -19326457 + B1_Mus1 SINE Alu 3 142 -6 3 1655 1697 261 19 5 chr3 140273505 140273925 -19325858 + Lx9 LINE L1 6554 6979 -665 3 1655 914 283 142 27 chr3 140273926 140274102 -19325681 - ORR1C2 LTR MaLR 0 384 189 3 1655 378 0 0 0 chr3 140274102 140274144 -19325639 + (GA)n Simple_repeat Simple_repeat 1 42 0 3 1655 914 283 142 27 chr3 140274144 140274305 -19325478 - ORR1C2 LTR MaLR -196 188 9 3 1655 3923 254 153 21 chr3 140274306 140275512 -19324271 - ORR1C2-int LTR MaLR -5 1365 1 3 1655 1116 273 55 45 chr3 140275512 140275892 -19323891 - ORR1C2 LTR MaLR 0 384 1 3 1655 285 171 71 0 chr3 140275913 140275983 -19323800 + Lx9 LINE L1 7328 7402 -242 3 1655 449 306 63 93 chr3 140275983 140276070 -19323713 - MTEa LTR MaLR -117 262 180 3 1655 1227 97 0 0 chr3 140276070 140276246 -19323537 + (TTC)n Simple_repeat Simple_repeat 2 177 0 3 1655 449 306 63 93 chr3 140276246 140276428 -19323355 - MTEa LTR MaLR -200 179 1 3 1655 21 57 0 0 chr3 140276929 140276964 -19322819 + AT_rich Low_complexity Low_complexity 1 35 0 3 1655 21 36 0 0 chr3 140278703 140278731 -19321052 + AT_rich Low_complexity Low_complexity 1 28 0 3 1655 828 276 27 9 chr3 140279301 140279524 -19320259 + Lx7 LINE L1 7017 7243 -453 3 1655 402 223 19 46 chr3 140279662 140279770 -19320013 + MIR SINE MIR 88 192 -70 3 1655 229 89 44 0 chr3 140279966 140280011 -19319772 + (TG)n Simple_repeat Simple_repeat 2 48 0 3 1655 6096 110 17 23 chr3 140280127 140281058 -19318725 - Lx LINE L1 -7 6647 5722 3 1655 912 333 58 21 chr3 140281691 140282019 -19317764 - MTE2b LTR MaLR -37 342 3 3 1655 513 86 32 0 chr3 140283575 140283668 -19316115 + (TAGA)n Simple_repeat Simple_repeat 2 97 0 3 1655 3646 202 83 8 chr3 140285648 140286420 -19313363 - Lx5 LINE L1 -2 7048 6219 3 1655 1272 212 25 5 chr3 140286419 140286941 -19312842 + Lx5 LINE L1 5563 6189 -861 3 1655 25 31 0 0 chr3 140286979 140287011 -19312772 + AT_rich Low_complexity Low_complexity 1 32 0 3 1655 30 45 0 0 chr3 140287079 140287123 -19312660 + AT_rich Low_complexity Low_complexity 1 44 0 3 1655 324 0 0 0 chr3 140287213 140287249 -19312534 + (TAA)n Simple_repeat Simple_repeat 1 36 0 3 1655 2642 97 0 60 chr3 140287292 140287708 -19312075 - L1Md_F2 LINE L1 -1 6581 6191 3 1655 501 144 0 0 chr3 140287749 140287839 -19311944 + (TA)n Simple_repeat Simple_repeat 2 91 0 3 1655 458 306 43 9 chr3 140287839 140288194 -19311589 - L1_Mur3 LINE L1 -1678 4202 3849 3 1655 834 196 53 30 chr3 140288247 140288451 -19311332 - ORR1A3 LTR MaLR -1 366 154 3 1655 23 0 0 0 chr3 140288453 140288476 -19311307 + AT_rich Low_complexity Low_complexity 1 23 0 3 1655 1520 223 14 14 chr3 140288679 140289038 -19310745 + Lx6 LINE L1 5695 6053 -1407 3 1655 3240 147 67 21 chr3 140289038 140289670 -19310113 - RMER6A LTR ERVK 0 756 96 3 1655 534 184 0 55 chr3 140289686 140289795 -19309988 + RLTR23 LTR ERV1 2 104 -326 3 1655 237 321 101 25 chr3 140289788 140289986 -19309797 + RLTR23 LTR ERV1 71 283 -147 3 1655 1782 209 128 88 chr3 140290502 140290539 -19309244 - RMER6C LTR ERVK -1 689 659 3 1655 2275 188 104 65 chr3 140290539 140291200 -19308583 + RMER6C LTR ERVK 1 687 -3 3 1655 1782 209 128 88 chr3 140291200 140291824 -19307959 - RMER6C LTR ERVK -32 658 1 3 1655 263 250 24 12 chr3 140292086 140292171 -19307612 + MTE2a LTR MaLR 294 379 0 3 1655 286 266 30 45 chr3 140292330 140292464 -19307319 + Charlie21a DNA MER1_type 493 624 -589 3 1655 270 0 0 0 chr3 140292522 140292552 -19307231 + (TC)n Simple_repeat Simple_repeat 1 30 0 3 1655 201 39 0 0 chr3 140292556 140292582 -19307201 + (CA)n Simple_repeat Simple_repeat 2 27 0 3 1655 1125 0 0 0 chr3 140292589 140292714 -19307069 + (GGGAGA)n Simple_repeat Simple_repeat 2 126 0 3 1655 21 82 0 0 chr3 140292836 140292885 -19306898 + AT_rich Low_complexity Low_complexity 1 49 0 3 1655 1063 68 61 7 chr3 140293726 140293874 -19305909 - L1_Mus1 LINE L1 -92 6475 6320 3 1655 650 272 59 22 chr3 140294571 140294793 -19304990 - MTD LTR MaLR -2 417 188 4 1655 396 0 0 0 chr3 140295131 140295175 -19304608 + (TA)n Simple_repeat Simple_repeat 2 45 0 4 1655 245 337 118 49 chr3 140295652 140295855 -19303928 + MLT2F LTR ERVL 438 654 -9 4 1655 1199 48 0 13 chr3 140298148 140298297 -19301486 - B1_Mus1 SINE Alu 0 148 2 4 1655 1262 325 69 78 chr3 140299451 140300214 -19299569 - MTE-int LTR MaLR -28 1552 674 4 1655 2209 107 3 0 chr3 140300323 140300641 -19299142 - L1_Mus4 LINE L1 -1 6635 6317 4 1655 180 0 0 0 chr3 140300698 140300718 -19299065 + (TA)n Simple_repeat Simple_repeat 1 20 0 4 1655 525 369 57 31 chr3 140300718 140300857 -19298926 - MTE-int LTR MaLR -1081 499 361 4 1655 1900 46 8 0 chr3 140300857 140301095 -19298688 + L1Md_F3 LINE L1 6330 6569 -15 4 1655 525 369 57 31 chr3 140301095 140301305 -19298478 - MTE-int LTR MaLR -1220 360 141 4 1655 351 0 0 0 chr3 140301445 140301484 -19298299 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 4 1655 1113 72 0 0 chr3 140301484 140301622 -19298161 - B1_Mm SINE Alu -9 138 1 4 1655 4245 166 24 11 chr3 140301622 140302367 -19297416 - Lx2 LINE L1 -21 6976 6222 4 1655 520 351 22 78 chr3 140302368 140302547 -19297236 - B3A SINE B2 -45 171 3 4 1655 293 337 21 0 chr3 140302554 140302649 -19297134 - MTE-int LTR MaLR -1476 104 8 4 1655 551 330 24 34 chr3 140302978 140303270 -19296513 + B4A SINE B4 2 290 -2 4 1655 315 239 81 18 chr3 140303405 140303516 -19296267 - Lx LINE L1 0 6654 6537 4 1655 1026 124 7 0 chr3 140303517 140303662 -19296121 - Lx LINE L1 -459 6195 6050 4 1655 459 0 0 0 chr3 140304752 140304803 -19294980 + (TG)n Simple_repeat Simple_repeat 2 52 0 4 1655 204 125 0 0 chr3 140305376 140305408 -19294375 + (TG)n Simple_repeat Simple_repeat 1 32 0 4 1655 530 341 124 32 chr3 140305633 140305915 -19293868 - L4 LINE RTE -979 1050 743 4 1655 240 325 16 24 chr3 140306574 140306697 -19293086 + (TATATG)n Simple_repeat Simple_repeat 6 127 0 4 1655 600 14 0 0 chr3 140307166 140307235 -19292548 + (TAGA)n Simple_repeat Simple_repeat 2 70 0 4 1655 611 63 35 26 chr3 140309781 140309895 -19289888 + (GGAA)n Simple_repeat Simple_repeat 3 117 0 4 1655 189 94 0 0 chr3 140310239 140310271 -19289512 + (T)n Simple_repeat Simple_repeat 1 32 0 4 1655 1217 27 0 33 chr3 140310274 140310427 -19289356 - B1_Mus1 SINE Alu 0 148 1 4 1655 221 0 35 0 chr3 140310641 140310670 -19289113 + (TA)n Simple_repeat Simple_repeat 1 30 0 4 1655 1725 142 34 71 chr3 140310674 140310817 -19288966 - Lx3_Mus LINE L1 0 7009 6876 4 1655 1233 41 0 0 chr3 140310817 140310964 -19288819 - B1_Mm SINE Alu 0 147 1 4 1655 1725 142 34 71 chr3 140310964 140311146 -19288637 - Lx3_Mus LINE L1 -134 6875 6696 4 1655 27 0 0 0 chr3 140313806 140313833 -19285950 + AT_rich Low_complexity Low_complexity 1 27 0 4 1655 22888 86 9 12 chr3 140313864 140317767 -19282016 - L1Md_F2 LINE L1 -12 6570 2684 4 1655 5136 142 29 22 chr3 140317759 140318816 -19280967 - L1Md_F2 LINE L1 -4460 1423 355 4 1655 1661 181 261 39 chr3 140320235 140320420 -19279363 + RMER6C LTR ERVK 2 241 -449 4 1655 188 100 25 0 chr3 140320420 140320460 -19279323 + (CAGTT)n Simple_repeat Simple_repeat 2 42 0 4 1655 1661 181 261 39 chr3 140320460 140320838 -19278945 + RMER6C LTR ERVK 242 690 0 4 1655 200 233 0 0 chr3 140321415 140321458 -19278325 + (TA)n Simple_repeat Simple_repeat 1 43 0 4 1655 233 366 39 54 chr3 140321634 140321839 -19277944 - L3 LINE CR1 -882 3607 3406 4 1655 24 0 0 0 chr3 140322070 140322094 -19277689 + AT_rich Low_complexity Low_complexity 1 24 0 4 1655 1688 265 93 2 chr3 140322148 140322162 -19277621 - Lx5 LINE L1 0 7050 7037 4 1655 1191 74 0 0 chr3 140322162 140322325 -19277458 + (TTTC)n Simple_repeat Simple_repeat 2 164 0 4 1655 1688 265 93 2 chr3 140322325 140322805 -19276978 - Lx5 LINE L1 -14 7036 6512 4 1655 899 245 136 15 chr3 140324804 140325135 -19274648 - ORR1D1 LTR MaLR 0 374 4 4 1655 663 143 29 25 chr3 140325394 140325531 -19274252 + B1_Mur3 SINE Alu 2 149 -1 4 1655 24 0 0 0 chr3 140326479 140326503 -19273280 + AT_rich Low_complexity Low_complexity 1 24 0 4 1655 336 286 36 43 chr3 140327455 140327594 -19272189 + L1MB7 LINE L1 6046 6183 -1 4 1655 1689 268 70 33 chr3 140327601 140328422 -19271361 - Lx7 LINE L1 -1539 6157 5313 4 1655 650 312 72 71 chr3 140328417 140328975 -19270808 + Lx7 LINE L1 6900 7471 -2 4 1655 31 0 0 0 chr3 140329308 140329339 -19270444 + AT_rich Low_complexity Low_complexity 1 31 0 4 1655 1862 176 23 33 chr3 140329882 140330275 -19269508 + Lx LINE L1 6259 6647 -7 4 1655 262 152 17 17 chr3 140330307 140330367 -19269416 + (TA)n Simple_repeat Simple_repeat 2 61 0 4 1655 429 263 10 0 chr3 140330556 140330655 -19269128 - PB1D10 SINE Alu -1 116 17 4 1655 239 342 26 13 chr3 140332189 140332266 -19267517 + MLT1L LTR MaLR 3 80 -530 4 1655 602 26 13 0 chr3 140332760 140332836 -19266947 + (GA)n Simple_repeat Simple_repeat 2 78 0 4 1655 318 162 14 81 chr3 140332855 140332929 -19266854 - Lx9 LINE L1 -178 7466 7398 4 1655 384 22 0 0 chr3 140333889 140333934 -19265849 + (CAGA)n Simple_repeat Simple_repeat 4 48 0 4 1655 575 245 48 0 chr3 140334974 140335121 -19264662 - Lx7 LINE L1 0 7460 7307 4 1655 14720 116 24 14 chr3 140335123 140336837 -19262946 + L1Md_F LINE L1 247 1967 -3916 4 1655 396 0 0 0 chr3 140336837 140336881 -19262902 + (TAAA)n Simple_repeat Simple_repeat 2 45 0 4 1655 14720 82 14 1 chr3 140336881 140338209 -19261574 + L1Md_F LINE L1 1968 3323 -2560 4 1655 2844 96 9 7 chr3 140338209 140338628 -19261155 + L1Md_F2 LINE L1 6161 6580 -2 4 1655 3011 269 84 17 chr3 140338630 140340063 -19259720 - Lx7 LINE L1 -143 7317 5793 4 1655 877 108 49 35 chr3 140340063 140340207 -19259576 - B1_Mus1 SINE Alu -2 146 1 4 1655 3011 277 95 13 chr3 140340207 140340376 -19259407 - Lx7 LINE L1 -338 5818 5648 4 1655 202 15 0 139 chr3 140340376 140340455 -19259328 + (GTTTG)n Simple_repeat Simple_repeat 2 69 0 4 1655 1109 83 0 0 chr3 140340458 140340603 -19259180 - B1_Mus1 SINE Alu 0 148 4 4 1655 1932 216 72 32 chr3 140340605 140341161 -19258622 - Lx7 LINE L1 -235 5645 5068 4 1655 1519 76 0 15 chr3 140341160 140341361 -19258422 + L1_Mus1 LINE L1 6160 6357 -210 4 1655 750 105 0 2 chr3 140341343 140341456 -19258327 + Lx2 LINE L1 6350 6460 -540 4 1655 180 0 0 0 chr3 140342043 140342063 -19257720 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 4 1655 5426 256 107 39 chr3 140342552 140344460 -19255323 - Lx7 LINE L1 0 7696 5660 4 1655 827 297 168 3 chr3 140344459 140345058 -19254725 - Lx7 LINE L1 -6751 977 280 4 1655 26 74 0 0 chr3 140345359 140345413 -19254370 + AT_rich Low_complexity Low_complexity 1 54 0 4 1655 252 190 322 17 chr3 140345888 140346006 -19253777 + L2a LINE L2 3255 3408 -18 4 1655 327 25 0 0 chr3 140346225 140346265 -19253518 + (CAAA)n Simple_repeat Simple_repeat 1 40 0 4 1655 30 45 0 0 chr3 140346851 140346895 -19252888 + AT_rich Low_complexity Low_complexity 1 44 0 4 1655 600 220 73 34 chr3 140347051 140347230 -19252553 - B2_Mm2 SINE B2 -9 186 1 4 1655 674 263 0 28 chr3 140347272 140347413 -19252370 + B3 SINE B2 70 206 -10 4 1655 256 311 0 32 chr3 140347433 140347526 -19252257 + (TATATG)n Simple_repeat Simple_repeat 4 93 0 4 1655 3486 20 2 0 chr3 140347840 140348235 -19251548 - MTA_Mm LTR MaLR 0 396 1 4 1655 9122 33 4 1 chr3 140348235 140349330 -19250453 - MTA_Mm-int LTR MaLR 0 1098 1 4 1655 3486 20 2 0 chr3 140349330 140349725 -19250058 - MTA_Mm LTR MaLR 0 396 1 4 1655 687 128 0 0 chr3 140350065 140350174 -19249609 + (GAAA)n Simple_repeat Simple_repeat 4 112 0 4 1655 633 149 0 0 chr3 140350434 140350548 -19249235 + (TG)n Simple_repeat Simple_repeat 2 115 0 4 1655 385 288 91 36 chr3 140350653 140350927 -19248856 - L1M2 LINE L1 -3015 3128 2840 4 1655 208 91 22 22 chr3 140351860 140351905 -19247878 + (CAAAAA)n Simple_repeat Simple_repeat 3 47 0 4 1655 926 62 8 0 chr3 140352006 140352136 -19247647 + (TG)n Simple_repeat Simple_repeat 1 131 0 4 1655 27 0 0 0 chr3 140352250 140352277 -19247506 + AT_rich Low_complexity Low_complexity 1 27 0 4 1655 23 33 0 0 chr3 140352747 140352777 -19247006 + AT_rich Low_complexity Low_complexity 1 30 0 4 1655 267 31 0 0 chr3 140354050 140354082 -19245701 + (CA)n Simple_repeat Simple_repeat 1 32 0 4 1655 233 208 0 0 chr3 140354085 140354138 -19245645 + GA-rich Low_complexity Low_complexity 2 54 0 4 1655 3137 193 5 46 chr3 140354150 140354781 -19245002 + RMER20B LTR ERVK 1 605 -22 4 1655 232 212 45 0 chr3 140354853 140354919 -19244864 - L1MC1 LINE L1 -229 6115 6047 4 1655 345 298 100 61 chr3 140355028 140355339 -19244444 - L1MC1 LINE L1 -464 5869 5547 4 1655 670 300 107 57 chr3 140355471 140355994 -19243789 - L1MC1 LINE L1 -748 5398 4850 4 1655 209 111 28 0 chr3 140356306 140356342 -19243441 + (TTTTG)n Simple_repeat Simple_repeat 3 39 0 4 1655 24 67 0 0 chr3 140356928 140356973 -19242810 + AT_rich Low_complexity Low_complexity 1 45 0 4 1655 244 246 0 0 chr3 140357551 140357608 -19242175 - Lx9 LINE L1 -263 7381 7325 4 1655 378 74 0 0 chr3 140357685 140357739 -19242044 + (TG)n Simple_repeat Simple_repeat 1 54 0 4 1655 23 0 0 0 chr3 140358814 140358837 -19240946 + AT_rich Low_complexity Low_complexity 1 23 0 4 1655 624 27 0 0 chr3 140359259 140359333 -19240450 + (TC)n Simple_repeat Simple_repeat 1 74 0 4 1655 405 261 27 54 chr3 140361021 140361207 -19238576 + Lx9 LINE L1 7319 7499 -145 4 1655 504 0 0 0 chr3 140361224 140361280 -19238503 + (TG)n Simple_repeat Simple_repeat 2 57 0 4 1655 396 0 0 0 chr3 140361351 140361395 -19238388 + (TG)n Simple_repeat Simple_repeat 2 45 0 4 1655 2031 220 106 30 chr3 140361884 140362442 -19237341 - RMER1C Other Other -3 1339 740 4 1655 1177 70 52 6 chr3 140363707 140363880 -19235903 + B2_Mm2 SINE B2 10 190 -5 4 1655 264 30 0 0 chr3 140363933 140363966 -19235817 + (CAA)n Simple_repeat Simple_repeat 2 34 0 4 1655 189 155 17 33 chr3 140364615 140364675 -19235108 + (TATATG)n Simple_repeat Simple_repeat 2 60 0 4 1655 31 0 0 0 chr3 140364689 140364720 -19235063 + AT_rich Low_complexity Low_complexity 1 31 0 4 1655 1119 335 115 26 chr3 140365049 140365928 -19233855 - ERVL-B4-int LTR ERVL -3016 2698 1742 4 1655 913 226 81 13 chr3 140365935 140366161 -19233622 - ORR1C2 LTR MaLR -139 245 1 4 1655 2397 200 82 22 chr3 140366162 140366698 -19233085 - ORR1C2-int LTR MaLR 0 1509 942 4 1655 1076 211 126 34 chr3 140366737 140366934 -19232849 - ORR1C2 LTR MaLR -1 383 186 4 1655 279 0 0 0 chr3 140366934 140366965 -19232818 + (CA)n Simple_repeat Simple_repeat 2 32 0 4 1655 737 0 26 34 chr3 140366968 140367085 -19232698 + (GAGAA)n Simple_repeat Simple_repeat 5 120 0 4 1655 1076 211 126 34 chr3 140367085 140367232 -19232551 - ORR1C2 LTR MaLR -199 185 7 4 1655 420 235 246 51 chr3 140367442 140367577 -19232206 + B3 SINE B2 8 171 -45 4 1655 477 0 0 0 chr3 140367577 140367630 -19232153 + (CA)n Simple_repeat Simple_repeat 2 54 0 4 1655 420 235 246 51 chr3 140367630 140367669 -19232114 + B3 SINE B2 172 216 0 4 1655 324 70 0 0 chr3 140369051 140369094 -19230689 + (T)n Simple_repeat Simple_repeat 1 43 0 4 1655 239 310 11 44 chr3 140370466 140370557 -19229226 + PB1D10 SINE Alu 30 117 0 5 1655 195 42 0 0 chr3 140371286 140371310 -19228473 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 5 1655 181 135 16 148 chr3 140373428 140373455 -19226328 + MIR SINE MIR 195 247 -15 5 1655 192 121 29 29 chr3 140373455 140373489 -19226294 + L2a LINE L2 3372 3405 -21 5 1655 427 302 42 0 chr3 140374578 140374697 -19225086 + RSINE1 SINE B4 12 135 -30 5 1655 1525 184 101 0 chr3 140374697 140375023 -19224760 + RLTR15 LTR ERVK 1 359 0 5 1655 451 351 18 29 chr3 140375061 140375221 -19224562 + B3A SINE B2 1 158 -40 5 1655 312 27 0 0 chr3 140375221 140375258 -19224525 + (CA)n Simple_repeat Simple_repeat 1 37 0 5 1655 451 348 26 825 chr3 140375258 140375323 -19224460 + B3A SINE B2 153 216 0 5 1655 28 0 0 0 chr3 140376547 140376575 -19223208 + AT_rich Low_complexity Low_complexity 1 28 0 5 1655 1213 250 78 28 chr3 140376794 140377152 -19222631 - RLTR14 LTR ERV1 -4 378 3 5 1655 354 223 49 21 chr3 140377910 140378052 -19221731 - Lx9 LINE L1 -4 7640 7495 5 206 786 316 28 8 chr3 140378052 140378304 -19221479 - Lx8 LINE L1 -129 7344 7088 5 1656 60 15 0 0 chr3 140378964 140379031 -19220752 + AT_rich Low_complexity Low_complexity 1 67 0 5 1656 714 329 82 56 chr3 140379137 140379476 -19220307 + MTD LTR MaLR 6 354 -65 5 1656 234 0 0 0 chr3 140379476 140379502 -19220281 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 5 1656 1065 92 0 0 chr3 140379505 140379647 -19220136 - B1_Mm SINE Alu -4 143 2 5 1656 714 329 82 56 chr3 140379647 140379693 -19220090 + MTD LTR MaLR 355 402 -17 5 1656 1572 226 67 71 chr3 140379808 140379958 -19219825 + RMER20A LTR ERVK 11 147 -369 5 1656 192 40 0 0 chr3 140379958 140379983 -19219800 + (CA)n Simple_repeat Simple_repeat 1 25 0 5 1656 1572 226 67 71 chr3 140379983 140380338 -19219445 + RMER20A LTR ERVK 148 514 -2 5 1656 317 259 38 59 chr3 140380654 140380816 -19218967 + L1M2 LINE L1 2268 2451 -3689 5 1656 27 62 0 0 chr3 140380832 140380880 -19218903 + AT_rich Low_complexity Low_complexity 1 48 0 5 1656 508 322 175 17 chr3 140380940 140381562 -19218221 + L1M2 LINE L1 2544 3269 -2877 5 1656 1108 190 54 118 chr3 140381563 140381934 -19217849 - RMER16 LTR ERVK 0 533 5 5 1656 806 302 82 92 chr3 140382021 140382134 -19217649 + L1_Rod LINE L1 4858 4952 -895 5 1656 1116 97 0 0 chr3 140382134 140382279 -19217504 + B1_Mus1 SINE Alu 4 148 0 5 1656 806 302 82 92 chr3 140382279 140382306 -19217477 + L1_Rod LINE L1 4953 4957 -890 5 1656 210 26 50 25 chr3 140382306 140382346 -19217437 + (CAAA)n Simple_repeat Simple_repeat 1 41 0 5 1656 806 302 82 92 chr3 140382346 140382482 -19217301 + L1_Rod LINE L1 4958 5092 -755 5 1656 2022 127 16 30 chr3 140382482 140382846 -19216937 + Lx2 LINE L1 6639 6997 0 5 1656 806 302 82 92 chr3 140382846 140383043 -19216740 + L1_Rod LINE L1 5093 5312 -535 5 1656 2098 139 9 3 chr3 140383043 140383368 -19216415 + ORR1A2 LTR MaLR 1 327 0 5 1656 806 302 82 92 chr3 140383368 140383581 -19216202 + L1_Rod LINE L1 5313 5537 -310 5 1656 333 0 0 0 chr3 140383581 140383618 -19216165 + (CA)n Simple_repeat Simple_repeat 2 38 0 5 1656 806 302 82 92 chr3 140383618 140383733 -19216050 + L1_Rod LINE L1 5538 5653 -194 5 1656 255 31 0 0 chr3 140383859 140383891 -19215892 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 5 1656 331 38 0 0 chr3 140383892 140383941 -19215842 - B1_Mus2 SINE Alu -6 143 95 5 1656 9502 145 8 1 chr3 140383941 140386398 -19213385 + L1_Mus4 LINE L1 4152 6628 -8 5 1656 204 219 0 0 chr3 140388013 140388054 -19211729 + CT-rich Low_complexity Low_complexity 2 42 0 5 1656 3881 106 26 12 chr3 140388054 140388628 -19211155 - Lx3_Mus LINE L1 -16 6993 6412 5 1656 1746 202 87 3 chr3 140388634 140389002 -19210781 + MTC LTR MaLR 10 408 -13 5 1656 32998 72 5 22 chr3 140389165 140394406 -19205377 + L1Md_F3 LINE L1 233 5586 -297 5 1656 7676 54 14 0 chr3 140394408 140395376 -19204407 + L1Md_F3 LINE L1 5589 6570 -14 5 1656 242 73 0 24 chr3 140395657 140395699 -19204084 + (CAAA)n Simple_repeat Simple_repeat 2 42 0 5 1656 1421 295 8 0 chr3 140395701 140396098 -19203685 - Lx6 LINE L1 -842 6618 6219 5 1656 1041 202 21 28 chr3 140396231 140396521 -19203262 + Lx6 LINE L1 5686 5973 -1487 5 1656 545 364 70 49 chr3 140396636 140397122 -19202661 - MLT1E2 LTR MaLR -130 497 2 5 1656 492 62 0 0 chr3 140397978 140398042 -19201741 + (GA)n Simple_repeat Simple_repeat 2 65 0 5 1656 654 13 0 0 chr3 140398042 140398117 -19201666 + (GGAA)n Simple_repeat Simple_repeat 4 78 0 5 1656 25 31 0 0 chr3 140398894 140398926 -19200857 + AT_rich Low_complexity Low_complexity 1 32 0 5 1656 507 345 42 48 chr3 140399035 140399387 -19200396 - ORR1E LTR MaLR -10 369 6 5 1656 1679 213 44 14 chr3 140399521 140399883 -19199900 - MTC LTR MaLR -2 419 47 5 1656 4019 279 46 12 chr3 140399916 140401260 -19198523 + Lx6 LINE L1 6069 7458 -2 5 1656 433 217 83 19 chr3 140401314 140401422 -19198361 - B3A SINE B2 -83 115 1 5 1656 340 406 4 44 chr3 140403481 140403710 -19196073 - ID_B1 SINE B4 0 224 5 5 1656 253 354 44 9 chr3 140404024 140404138 -19195645 - ORR1E LTR MaLR -236 123 6 5 1656 1490 239 63 8 chr3 140404353 140404852 -19194931 + Lx2B LINE L1 6435 7054 -4 5 1656 1307 62 3 0 chr3 140406488 140406795 -19192988 + (TCTA)n Simple_repeat Simple_repeat 1 308 0 5 1656 2677 101 29 61 chr3 140406992 140407435 -19192348 - Lx2 LINE L1 -1 6996 6568 5 1656 218 173 39 0 chr3 140408144 140408196 -19191587 + (TA)n Simple_repeat Simple_repeat 2 55 0 5 1656 1580 284 7 121 chr3 140408463 140409183 -19190600 + Lx9 LINE L1 6526 7163 -481 5 1656 286 256 11 23 chr3 140409228 140409316 -19190467 + Lx9 LINE L1 7145 7231 -413 5 1656 1274 73 11 0 chr3 140409725 140409903 -19189880 + (GGAAA)n Simple_repeat Simple_repeat 1 180 0 5 1656 833 158 0 6 chr3 140409904 140410063 -19189720 + GA-rich Low_complexity Low_complexity 2 159 0 5 1656 206 364 0 18 chr3 140414303 140414415 -19185368 + (TG)n Simple_repeat Simple_repeat 1 110 0 5 1656 408 67 0 0 chr3 140414542 140414602 -19185181 + (TG)n Simple_repeat Simple_repeat 1 60 0 5 1656 459 0 0 0 chr3 140416061 140416112 -19183671 + (GA)n Simple_repeat Simple_repeat 1 51 0 5 1656 328 328 58 11 chr3 140416530 140416721 -19183062 - Lx9 LINE L1 -333 7311 7112 5 1656 360 216 65 47 chr3 140417054 140417161 -19182622 + RMER30 DNA MER1_type 92 200 -2 5 1656 2444 65 3 0 chr3 140419451 140419760 -19180023 + L1_Mus1 LINE L1 6255 6564 -3 5 1656 1609 37 0 10 chr3 140422169 140422362 -19177421 + B2_Mm1a SINE B2 1 191 -2 5 1656 441 310 68 48 chr3 140422686 140422937 -19176846 + MER89 LTR ERV1 172 427 -132 5 1656 231 36 0 0 chr3 140422963 140422991 -19176792 + (CAAAAA)n Simple_repeat Simple_repeat 3 30 0 5 1656 4430 10 0 12 chr3 140423491 140423990 -19175793 - MT2_Mm LTR ERVL 0 493 1 5 1656 302 0 0 0 chr3 140423990 140424028 -19175755 - MERVL-int LTR ERVL 0 5485 5448 5 1656 350 171 71 35 chr3 140424028 140424113 -19175670 - ORR1A3-int LTR MaLR -1323 640 553 5 1656 38667 16 14 0 chr3 140424113 140429387 -19170396 - MERVL-int LTR ERVL -125 5360 14 5 1656 31019 4 0 1 chr3 140429387 140429400 -19170383 - L1Md_A LINE L1 -974 4909 4899 5 1656 4395 10 0 12 chr3 140429400 140429895 -19169888 - MT2_Mm LTR ERVL 0 493 5 5 1656 31019 8 0 2 chr3 140429895 140435209 -19164574 - L1Md_A LINE L1 -985 4898 1 5 1656 5486 46 1 15 chr3 140435198 140436867 -19162916 - L1Md_A LINE L1 -5972 752 1 5 1656 268 297 22 11 chr3 140437488 140437580 -19162203 + GA-rich Low_complexity Low_complexity 3 95 0 5 1656 405 344 50 0 chr3 140438719 140438879 -19160904 + B3A SINE B2 3 170 -28 5 1656 563 40 14 0 chr3 140438888 140438962 -19160821 + (TA)n Simple_repeat Simple_repeat 1 75 0 5 1656 222 129 48 0 chr3 140440731 140440793 -19158990 + (TA)n Simple_repeat Simple_repeat 1 65 0 5 1656 23 0 0 0 chr3 140440919 140440942 -19158841 + AT_rich Low_complexity Low_complexity 1 23 0 5 1656 346 294 9 64 chr3 140441330 140441439 -19158344 + PB1D10 SINE Alu 11 113 -4 5 1656 348 240 73 0 chr3 140442369 140442465 -19157318 + MLT1A1 LTR MaLR 304 406 -2 5 1656 4052 134 27 19 chr3 140442685 140443455 -19156328 - L1_Mur2 LINE L1 -748 5129 4354 5 1656 2729 171 26 40 chr3 140443452 140444030 -19155753 - Lx4A LINE L1 -700 6358 5789 5 1656 569 262 82 18 chr3 140444037 140444208 -19155575 - Lx4B LINE L1 -6 7052 6871 5 1656 2116 136 47 3 chr3 140444217 140444601 -19155182 + Lx2B LINE L1 5735 6135 -865 5 1656 431 103 656 48 chr3 140444602 140444749 -19155034 - Lx5 LINE L1 -1254 5796 5561 5 1656 234 222 59 73 chr3 140444749 140444817 -19154966 + Charlie13a DNA Charlie 547 613 -901 5 1656 1843 166 20 3 chr3 140444817 140445161 -19154622 - L1_Mur2 LINE L1 -386 5491 5142 5 1656 3253 158 40 2 chr3 140445160 140445692 -19154091 + Lx4A LINE L1 6378 6929 -129 5 1656 1230 228 109 56 chr3 140445696 140446154 -19153629 - RMER2 LTR ERV1 -4 563 39 5 1656 392 179 0 64 chr3 140446175 140446300 -19153483 + Lx4A LINE L1 6929 7045 -13 5 1656 318 50 0 0 chr3 140446300 140446340 -19153443 + (GA)n Simple_repeat Simple_repeat 2 41 0 5 1656 225 132 0 0 chr3 140446343 140446381 -19153402 + (CAGAGA)n Simple_repeat Simple_repeat 5 42 0 5 1656 243 0 0 0 chr3 140447318 140447345 -19152438 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 5 1656 1017 94 0 0 chr3 140447345 140447483 -19152300 - B1_Mus2 SINE Alu -9 138 1 5 1656 243 288 192 17 chr3 140447691 140447788 -19151995 - Lx9 LINE L1 -45 7599 7480 5 1656 372 59 0 0 chr3 140447788 140447839 -19151944 + (CA)n Simple_repeat Simple_repeat 2 52 0 5 1656 243 288 192 17 chr3 140447839 140447981 -19151802 - Lx9 LINE L1 -165 7479 7319 5 1656 23 33 0 0 chr3 140448123 140448153 -19151630 + AT_rich Low_complexity Low_complexity 1 30 0 5 1656 264 59 0 0 chr3 140450471 140450505 -19149278 + (CA)n Simple_repeat Simple_repeat 1 34 0 5 1656 227 206 18 36 chr3 140450587 140450698 -19149085 + (CATA)n Simple_repeat Simple_repeat 2 110 0 5 1656 238 247 21 21 chr3 140450714 140450809 -19148974 + (CATATA)n Simple_repeat Simple_repeat 6 100 0 5 1656 926 168 141 10 chr3 140450850 140451049 -19148734 - URR1A DNA MER1_type 0 226 2 5 1656 1106 95 0 0 chr3 140453031 140453178 -19146605 + B1_Mm SINE Alu 1 147 0 5 1656 697 156 0 28 chr3 140453180 140453325 -19146458 + A-rich Low_complexity Low_complexity 2 142 0 5 1656 241 306 14 0 chr3 140453889 140453961 -19145822 + ORR1D-int LTR MaLR 266 338 -1032 5 1656 1788 182 31 0 chr3 140453961 140454279 -19145504 - Lx5 LINE L1 -527 6523 6196 5 1656 1994 229 78 8 chr3 140454268 140454740 -19145043 + Lx5 LINE L1 6539 7043 -7 5 1656 294 211 0 0 chr3 140455180 140455232 -19144551 - Lx5 LINE L1 -460 6590 6539 5 1656 1749 189 31 3 chr3 140455221 140455540 -19144243 + Lx5 LINE L1 6196 6523 -527 5 1656 241 306 14 0 chr3 140455540 140455612 -19144171 - ORR1D-int LTR MaLR -1032 338 266 5 1656 188 330 104 44 chr3 140456497 140456814 -19142969 + L2 LINE L2 2254 2589 -830 5 1656 485 353 29 6 chr3 140457433 140457607 -19142176 + ID_B1 SINE B4 20 197 -27 6 1656 198 171 0 0 chr3 140457655 140457696 -19142087 + (TG)n Simple_repeat Simple_repeat 2 42 0 6 1656 281 273 47 66 chr3 140457832 140457882 -19141901 + CYRA11_Mm Unknown Y-chromosome 127 174 -443 6 1656 470 145 0 0 chr3 140457882 140457951 -19141832 - URR1B DNA MER1_type 0 225 157 6 1656 2854 163 19 14 chr3 140457958 140458473 -19141310 - RLTR12B LTR ERVK -8 520 3 6 1656 626 241 27 7 chr3 140458475 140458621 -19141162 - URR1B DNA MER1_type -63 162 14 6 1656 1236 269 57 14 chr3 140458732 140459102 -19140681 - L1_Rod LINE L1 -1692 4155 3770 6 1656 1437 321 56 30 chr3 140459098 140459989 -19139794 + Lx9 LINE L1 6716 7629 -15 6 1656 183 80 0 0 chr3 140460304 140460329 -19139454 + (TGGA)n Simple_repeat Simple_repeat 3 27 0 6 1656 362 270 76 34 chr3 140461421 140461540 -19138243 + B3 SINE B2 1 124 -92 6 1656 295 320 61 61 chr3 140461589 140461915 -19137868 - L1MC2 LINE L1 -1542 6243 5918 6 1656 802 141 21 7 chr3 140461924 140462067 -19137716 - URR1A DNA MER1_type -1 225 81 6 1656 4608 179 55 34 chr3 140462103 140463066 -19136717 - RLTR13C1 LTR ERVK 0 983 1 6 1656 387 312 62 60 chr3 140463068 140463487 -19136296 - L1MC2 LINE L1 -427 5917 5498 6 1656 21 57 0 0 chr3 140463659 140463694 -19136089 + AT_rich Low_complexity Low_complexity 1 35 0 6 1656 1806 289 36 28 chr3 140463704 140464198 -19135585 - Lx6 LINE L1 -1052 6644 6133 6 1656 3173 117 11 63 chr3 140464198 140464738 -19135045 + RLTR1B LTR ERV1 1 512 0 6 1656 1806 292 43 26 chr3 140464738 140464889 -19134894 - Lx6 LINE L1 -1557 6139 5980 6 1656 2277 112 14 11 chr3 140465197 140465557 -19134226 + Lx3_Mus LINE L1 6649 7009 0 6 1656 246 105 0 0 chr3 140465806 140465844 -19133939 + (CA)n Simple_repeat Simple_repeat 2 39 0 6 1656 583 276 74 19 chr3 140466008 140466423 -19133360 + L1M3 LINE L1 4256 4699 -1444 6 1656 320 281 47 20 chr3 140466495 140466644 -19133139 - L1MC LINE L1 -3706 2440 2288 6 1656 216 97 0 0 chr3 140467586 140467617 -19132166 + (TGG)n Simple_repeat Simple_repeat 1 31 0 6 1656 998 207 13 48 chr3 140467742 140468029 -19131754 - RMER19C LTR ERVK -262 349 1 6 1656 871 135 32 50 chr3 140468029 140468247 -19131536 - MurERV4_19-int LTR ERVK 0 5780 5567 6 1656 3401 233 58 59 chr3 140468277 140469053 -19130730 + Lx7 LINE L1 6579 7354 -342 6 1656 441 0 0 0 chr3 140469053 140469102 -19130681 + (TC)n Simple_repeat Simple_repeat 2 50 0 6 1656 351 0 0 0 chr3 140469102 140469140 -19130643 + (TG)n Simple_repeat Simple_repeat 2 40 0 6 1656 3401 233 58 59 chr3 140469140 140469399 -19130384 + Lx7 LINE L1 7355 7613 -83 6 1656 2684 93 18 5 chr3 140469423 140469822 -19129961 + L1_Mus3 LINE L1 6230 6633 -5 6 1656 359 294 8 8 chr3 140469988 140470108 -19129675 + L1MC3 LINE L1 6731 6850 -935 6 1656 236 281 113 29 chr3 140470447 140470652 -19129131 - L1M5 LINE L1 -392 5787 5565 6 1656 1675 134 22 0 chr3 140470707 140470975 -19128808 - Lx LINE L1 -15 6639 6366 6 1656 257 337 107 37 chr3 140472405 140472621 -19127162 - MIR SINE MIR -29 233 3 6 1656 588 340 94 66 chr3 140473113 140473794 -19125989 - L2 LINE L2 -534 2885 2186 6 1656 775 88 46 17 chr3 140473799 140473972 -19125811 + CT-rich Low_complexity Low_complexity 3 180 0 6 1656 8749 120 19 18 chr3 140473976 140475323 -19124460 - Lx3A LINE L1 -6 6975 5627 6 1656 929 126 0 0 chr3 140475322 140475465 -19124318 + L1_Mur1 LINE L1 4813 4955 -931 6 1656 766 261 188 10 chr3 140475517 140475826 -19123957 + ORR1D1 LTR MaLR 1 364 -10 6 1656 3081 257 75 52 chr3 140475905 140476864 -19122919 + ORR1D1-int LTR MaLR 43 1023 -347 6 1656 203 241 0 0 chr3 140477000 140477054 -19122729 + GA-rich Low_complexity Low_complexity 1 54 0 6 1656 1225 219 97 12 chr3 140477216 140477535 -19122248 + ORR1D1-int LTR MaLR 1025 1370 0 6 1656 329 233 174 8 chr3 140477535 140477656 -19122127 + ORR1D1 LTR MaLR 1 141 -233 6 1656 469 283 87 0 chr3 140477702 140477840 -19121943 + ORR1D1 LTR MaLR 225 374 0 6 1656 384 22 0 0 chr3 140478005 140478050 -19121733 + (TG)n Simple_repeat Simple_repeat 2 46 0 6 1656 246 62 0 0 chr3 140478052 140478084 -19121699 + (GA)n Simple_repeat Simple_repeat 1 32 0 6 1656 252 371 233 6 chr3 140478124 140478283 -19121500 - B4A SINE B4 -96 196 2 6 1656 247 214 0 54 chr3 140478446 140478520 -19121263 + A-rich Low_complexity Low_complexity 3 72 0 6 1656 432 0 0 0 chr3 140478539 140478587 -19121196 + (GA)n Simple_repeat Simple_repeat 1 48 0 6 1656 24 32 0 0 chr3 140479024 140479055 -19120728 + AT_rich Low_complexity Low_complexity 1 31 0 6 1656 545 307 102 110 chr3 140479210 140479455 -19120328 + B4 SINE B4 31 273 -19 6 1656 647 12 12 0 chr3 140479492 140479572 -19120211 + (CA)n Simple_repeat Simple_repeat 2 82 0 6 1656 199 305 12 47 chr3 140480804 140480890 -19118893 + MIRb SINE MIR 152 234 -34 6 1656 240 35 0 0 chr3 140481899 140481928 -19117855 + (TC)n Simple_repeat Simple_repeat 2 30 0 6 1656 396 0 0 0 chr3 140481967 140482011 -19117772 + (GA)n Simple_repeat Simple_repeat 2 45 0 6 1656 226 306 110 24 chr3 140483840 140484004 -19115779 + L2a LINE L2 3213 3390 -36 6 1656 543 117 0 0 chr3 140484009 140484103 -19115680 + (CGAAA)n Simple_repeat Simple_repeat 3 96 0 6 1656 468 313 129 73 chr3 140484287 140484559 -19115224 + B4 SINE B4 1 287 -5 6 1656 454 350 58 70 chr3 140486254 140486346 -19113437 + Charlie1a DNA MER1_type 8 89 -1366 6 1656 1746 10 0 0 chr3 140486346 140486549 -19113234 - L1Md_A LINE L1 -3 6579 6377 6 1656 454 350 58 70 chr3 140486549 140486769 -19113014 + Charlie1a DNA MER1_type 90 316 -1139 6 1656 34 0 0 0 chr3 140486853 140486887 -19112896 + AT_rich Low_complexity Low_complexity 1 34 0 6 1656 3477 159 80 21 chr3 140487154 140487461 -19112322 + RMER6A LTR ERVK 3 322 -434 6 1656 983 39 8 0 chr3 140487461 140487589 -19112194 + (GA)n Simple_repeat Simple_repeat 2 130 0 6 1656 3477 159 80 21 chr3 140487589 140487993 -19111790 + RMER6A LTR ERVK 323 756 0 6 1656 4770 55 2 0 chr3 140488023 140488619 -19111164 - L1Md_F2 LINE L1 -14 6568 5972 6 1656 6755 53 0 5 chr3 140488619 140489486 -19110297 + L1_Mm LINE L1 3445 4307 -1576 6 1656 28397 93 20 3 chr3 140490555 140495268 -19104515 + L1Md_F2 LINE L1 331 5180 -703 6 1656 1382 25 0 0 chr3 140495263 140495426 -19104357 - L1Md_F3 LINE L1 -665 5919 5757 6 1656 3385 68 14 0 chr3 140495426 140495870 -19103913 + L1Md_F2 LINE L1 6133 6582 0 6 1656 950 92 0 7 chr3 140495870 140495885 -19103898 - L1_Mm LINE L1 -127 5756 5743 6 1656 302 265 211 40 chr3 140496222 140496353 -19103430 - Lx9 LINE L1 -2 7642 7496 6 1656 465 90 0 0 chr3 140496353 140496420 -19103363 + (CATA)n Simple_repeat Simple_repeat 2 68 0 6 1656 302 265 211 40 chr3 140496420 140496610 -19103173 - Lx9 LINE L1 -149 7495 7267 6 1656 456 313 157 47 chr3 140496851 140497652 -19102131 + Charlie1a DNA MER1_type 395 1283 -172 6 1656 439 382 26 13 chr3 140497701 140497855 -19101928 - RSINE1 SINE B4 0 165 10 6 1656 1007 147 6 0 chr3 140499014 140499191 -19100592 + GA-rich Low_complexity Low_complexity 3 180 0 6 1656 651 112 26 0 chr3 140499191 140499307 -19100476 + (GAA)n Simple_repeat Simple_repeat 3 121 0 6 1656 253 105 0 0 chr3 140499307 140499345 -19100438 + (GGAA)n Simple_repeat Simple_repeat 2 39 0 6 1656 236 98 48 24 chr3 140499686 140499728 -19100055 + ORR1D2 LTR MaLR 13 55 -315 6 1656 581 244 167 11 chr3 140501154 140501328 -19098455 + ORR1D1 LTR MaLR 174 374 0 1 1656 442 261 18 18 chr3 140501707 140501820 -19097963 + PB1D9 SINE Alu 1 113 -7 2 1656 24 91 0 0 chr3 140501852 140501918 -19097865 + AT_rich Low_complexity Low_complexity 1 66 0 3 1656 396 59 0 0 chr3 140502107 140502158 -19097625 + (CTG)n Simple_repeat Simple_repeat 1 51 0 4 1656 195 42 0 0 chr3 140502215 140502239 -19097544 + (GGA)n Simple_repeat Simple_repeat 2 25 0 5 1656 417 247 20 10 chr3 140502796 140502880 -19096903 + PB1D7 SINE Alu 22 107 -13 6 1656 216 0 0 0 chr3 140502880 140502904 -19096879 + (CAAAA)n Simple_repeat Simple_repeat 1 24 0 7 1656 417 247 20 10 chr3 140502904 140502917 -19096866 + PB1D7 SINE Alu 108 120 0 6 1656 300 262 202 16 chr3 140502930 140503054 -19096729 + B1_Mus1 SINE Alu 1 147 -1 8 1656 227 93 0 23 chr3 140503059 140503103 -19096680 + (CAAAA)n Simple_repeat Simple_repeat 3 45 0 9 1656 364 96 0 0 chr3 140503182 140503234 -19096549 + RMER6C LTR ERVK 1 52 -638 1 1656 621 234 6 99 chr3 140503197 140503340 -19096443 + MT2B LTR ERVL 133 259 -342 1 1656 406 256 56 0 chr3 140503340 140503430 -19096353 + B1_Mus2 SINE Alu 3 97 -50 1 1656 368 217 207 21 chr3 140503432 140503625 -19096158 + RMER6A LTR ERVK 277 505 -251 1 1656 2950 192 62 7 chr3 140503635 140504211 -19095572 + RLTR17 LTR ERVK 1 608 -84 1 1656 958 65 0 0 chr3 140504206 140504329 -19095454 + MTB LTR MaLR 278 400 0 1 1656 6908 149 4 10 chr3 140504338 140505903 -19093880 - Lx LINE L1 -3 6651 5098 1 1656 8442 111 5 7 chr3 140505897 140507832 -19091951 - L1VL2 LINE L1 -1400 2215 284 1 1656 1426 172 37 15 chr3 140507833 140508104 -19091679 - RLTR12A LTR ERVK -7 561 285 1 1656 1380 181 18 11 chr3 140508106 140508379 -19091404 + RLTR15 LTR ERVK 56 330 -29 1 1656 405 0 0 0 chr3 140508684 140508729 -19091054 + (TTTA)n Simple_repeat Simple_repeat 3 47 0 2 1656 217 425 34 7 chr3 140508811 140508958 -19090825 - L4 LINE RTE -769 1260 1110 2 1656 325 356 30 0 chr3 140508989 140509124 -19090659 + MER117 DNA MER1_type 17 155 -42 2 1657 278 264 76 76 chr3 140510997 140511128 -19088655 + Lx7 LINE L1 7560 7690 -6 2 1657 243 89 35 18 chr3 140511128 140511185 -19088598 + (TA)n Simple_repeat Simple_repeat 2 59 0 2 1657 228 300 87 48 chr3 140511429 140511555 -19088228 - MIR SINE MIR -109 153 23 2 1657 704 258 51 118 chr3 140512065 140512514 -19087269 - MYSERV-int LTR ERVK -1752 4798 4380 2 1657 544 352 19 34 chr3 140512624 140512830 -19086953 - B3 SINE B2 -6 210 8 2 1657 1191 332 98 18 chr3 140514096 140514886 -19084897 - Lx8 LINE L1 -178 7295 6443 2 1657 680 74 9 0 chr3 140515245 140515353 -19084430 + (TAGA)n Simple_repeat Simple_repeat 1 109 0 2 1657 1607 258 45 12 chr3 140515495 140515899 -19083884 + Lx5 LINE L1 6634 7050 0 3 1657 21 0 0 0 chr3 140516202 140516223 -19083560 + AT_rich Low_complexity Low_complexity 1 21 0 3 1657 1124 89 60 16 chr3 140517212 140517394 -19082389 - L1Md_F2 LINE L1 0 6582 6393 3 1657 1597 50 5 5 chr3 140517814 140518033 -19081750 + MusHAL1 LINE L1 1816 2034 -678 3 1657 4022 113 22 20 chr3 140518033 140518667 -19081116 + Lx3A LINE L1 6344 6978 -3 3 1657 6938 43 0 5 chr3 140520098 140520973 -19078810 + L1Md_F2 LINE L1 5720 6582 0 3 1657 286 410 64 27 chr3 140521262 140521368 -19078415 - B4 SINE B4 -92 200 90 3 1657 486 0 0 0 chr3 140521368 140521422 -19078361 + (TG)n Simple_repeat Simple_repeat 1 54 0 3 1657 286 410 64 27 chr3 140521422 140521503 -19078280 - B4 SINE B4 -203 89 6 3 1657 21 0 0 0 chr3 140521673 140521694 -19078089 + AT_rich Low_complexity Low_complexity 1 21 0 3 1657 216 0 0 0 chr3 140522987 140523011 -19076772 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 3 1657 1042 291 85 21 chr3 140523578 140523967 -19075816 - MTD LTR MaLR -3 416 3 4 1657 1241 282 139 72 chr3 140523971 140524985 -19074798 - MTD-int LTR MaLR -2 1256 29 4 1657 1317 301 20 15 chr3 140525000 140525392 -19074391 - MTD LTR MaLR 0 419 26 4 1657 1018 60 45 0 chr3 140526097 140526230 -19073553 - L1_Mus1 LINE L1 -307 6259 6121 4 1657 2270 92 16 0 chr3 140526230 140526547 -19073236 + L1_Mus1 LINE L1 6246 6567 0 4 1657 225 404 64 21 chr3 140526883 140527070 -19072713 + MLT1E2 LTR MaLR 352 546 -81 4 1657 1202 40 0 0 chr3 140527114 140527262 -19072521 + B1_Mus1 SINE Alu 1 148 0 4 1657 285 98 0 0 chr3 140527262 140527303 -19072480 + (A)n Simple_repeat Simple_repeat 1 41 0 4 1657 41207 4 0 0 chr3 140527957 140534098 -19065685 - L1Md_A LINE L1 0 6582 441 4 1657 580 143 9 9 chr3 140534600 140534713 -19065070 + CT-rich Low_complexity Low_complexity 1 113 0 4 1657 26 70 0 14 chr3 140535025 140535083 -19064700 + AT_rich Low_complexity Low_complexity 1 58 0 4 1657 918 108 60 6 chr3 140535083 140535251 -19064532 - Lx3_Mus LINE L1 -11 6998 6822 4 1657 26 70 0 14 chr3 140535251 140535264 -19064519 + AT_rich Low_complexity Low_complexity 1 13 0 5 1657 413 36 0 18 chr3 140535456 140535512 -19064271 + (CA)n Simple_repeat Simple_repeat 2 56 0 5 1657 1117 279 101 7 chr3 140535533 140535948 -19063835 + L1MC LINE L1 5324 5777 -556 5 1657 3900 111 22 8 chr3 140536434 140537033 -19062750 - Lx LINE L1 -5 6649 6043 5 1657 192 125 0 0 chr3 140537071 140537103 -19062680 + (TG)n Simple_repeat Simple_repeat 1 32 0 5 1657 522 261 29 36 chr3 140537115 140537254 -19062529 - RSINE1 SINE B4 -26 139 2 5 1657 268 343 41 29 chr3 140538757 140538928 -19060855 + Arthur1C DNA Tip100 124 296 -67 5 1657 232 193 60 0 chr3 140541744 140541827 -19057956 - Lx6 LINE L1 -30 7430 7343 5 1657 314 122 27 0 chr3 140541853 140541927 -19057856 + (CAGA)n Simple_repeat Simple_repeat 2 77 0 5 1657 900 223 265 29 chr3 140541980 140542181 -19057602 - Lx6 LINE L1 -205 7255 7033 5 1657 1778 125 78 13 chr3 140542181 140542490 -19057293 + ORR1A4 LTR MaLR 1 329 0 5 1657 900 223 265 29 chr3 140542490 140542662 -19057121 - Lx6 LINE L1 -428 7032 6794 5 1657 281 364 53 40 chr3 140543047 140543273 -19056510 - MIR SINE MIR -3 259 31 6 1657 5841 177 59 10 chr3 140545100 140546256 -19053527 + Lx2 LINE L1 5690 6844 -153 6 1657 5098 57 137 2 chr3 140546334 140547139 -19052644 - L1_Mus1 LINE L1 0 6654 5663 6 1657 21 36 0 0 chr3 140547554 140547582 -19052201 + AT_rich Low_complexity Low_complexity 1 28 0 6 1657 25 31 0 0 chr3 140547749 140547781 -19052002 + AT_rich Low_complexity Low_complexity 1 32 0 6 1657 3281 164 45 0 chr3 140547803 140548377 -19051406 - Lx3B LINE L1 -10 6963 6364 6 1657 523 284 40 111 chr3 140548510 140548561 -19051222 - B3 SINE B2 -6 210 156 6 1657 534 16 0 0 chr3 140548561 140548624 -19051159 + (TG)n Simple_repeat Simple_repeat 1 63 0 6 1657 523 284 40 111 chr3 140548624 140548724 -19051059 - B3 SINE B2 -61 155 58 6 1657 300 27 0 0 chr3 140548724 140548761 -19051022 + (TTTA)n Simple_repeat Simple_repeat 2 38 0 6 1657 523 284 40 111 chr3 140548761 140548773 -19051010 - B3 SINE B2 -159 57 53 6 1657 2930 6 0 0 chr3 140548773 140549102 -19050681 - L1Md_A LINE L1 0 6582 6254 6 1657 523 284 40 111 chr3 140549102 140549162 -19050621 - B3 SINE B2 -164 52 1 6 1657 25 31 0 0 chr3 140549229 140549261 -19050522 + AT_rich Low_complexity Low_complexity 1 32 0 7 1657 295 108 38 38 chr3 140549525 140549631 -19050152 + (TA)n Simple_repeat Simple_repeat 2 107 0 7 1657 21 82 0 0 chr3 140549843 140549892 -19049891 + AT_rich Low_complexity Low_complexity 1 49 0 7 1657 202 372 116 6 chr3 140550423 140550596 -19049187 + MIRb SINE MIR 13 204 -64 7 1657 665 254 30 17 chr3 140551209 140551406 -19048377 + Lx7 LINE L1 6812 7030 -443 7 1657 240 208 19 29 chr3 140551389 140551493 -19048290 + Lx6 LINE L1 7358 7460 0 7 1657 872 226 0 35 chr3 140551488 140551690 -19048093 + Lx7 LINE L1 6988 7182 -514 7 1657 5192 48 0 24 chr3 140551690 140552368 -19047415 - L1Md_F2 LINE L1 -2 6580 5919 7 1657 359 329 56 28 chr3 140552368 140552395 -19047388 + Lx7 LINE L1 7195 7228 -245 7 1657 1465 337 72 22 chr3 140552702 140553556 -19046227 - Lx8 LINE L1 -1 7472 6577 7 1657 378 0 0 0 chr3 140554023 140554065 -19045718 + (TG)n Simple_repeat Simple_repeat 2 43 0 7 1657 210 195 0 0 chr3 140554337 140554378 -19045405 + L2a LINE L2 3386 3426 0 8 1657 461 336 47 0 chr3 140554882 140555031 -19044752 + MTD LTR MaLR 46 201 -218 8 1657 220 146 24 0 chr3 140555083 140555124 -19044659 + (TA)n Simple_repeat Simple_repeat 2 43 0 8 1657 38 0 0 0 chr3 140555165 140555203 -19044580 + AT_rich Low_complexity Low_complexity 1 38 0 8 1657 37 39 0 0 chr3 140555276 140555327 -19044456 + AT_rich Low_complexity Low_complexity 1 51 0 8 1657 264 333 0 0 chr3 140555383 140555449 -19044334 + ID4_ SINE ID 18 83 0 8 1657 216 0 0 0 chr3 140555507 140555531 -19044252 + (CAGA)n Simple_repeat Simple_repeat 3 26 0 8 1657 564 161 16 8 chr3 140555534 140555659 -19044124 + GA-rich Low_complexity Low_complexity 2 127 0 8 1657 633 27 0 0 chr3 140555918 140555993 -19043790 + (TA)n Simple_repeat Simple_repeat 2 76 0 8 1657 410 208 183 5 chr3 140555996 140556204 -19043579 - Lx9 LINE L1 -1 7643 7399 8 1657 291 28 0 0 chr3 140556277 140556313 -19043470 + (CA)n Simple_repeat Simple_repeat 2 37 0 9 1657 477 90 0 0 chr3 140556313 140556380 -19043403 + (TATG)n Simple_repeat Simple_repeat 3 69 0 9 1657 1122 76 0 14 chr3 140556435 140556581 -19043202 - B1_Mm SINE Alu -1 146 3 9 1657 26 0 0 0 chr3 140556624 140556650 -19043133 + AT_rich Low_complexity Low_complexity 1 26 0 9 1657 609 289 63 24 chr3 140556892 140557098 -19042685 + B3 SINE B2 2 215 -1 9 1657 213 39 0 0 chr3 140557628 140557654 -19042129 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 9 1657 4257 217 83 38 chr3 140557731 140558806 -19040977 - Lx5 LINE L1 -4 7046 5924 9 1657 462 279 39 17 chr3 140560678 140560863 -19038920 - B3A SINE B2 -4 191 2 9 1657 239 216 35 0 chr3 140561269 140561385 -19038398 + (TA)n Simple_repeat Simple_repeat 2 121 0 9 1657 264 198 24 6 chr3 140561364 140561532 -19038251 + (TCTA)n Simple_repeat Simple_repeat 4 174 0 9 1657 297 161 0 0 chr3 140561532 140561588 -19038195 + (TA)n Simple_repeat Simple_repeat 2 57 0 1 1657 3167 176 181 31 chr3 140562923 140563696 -19036087 + RMER19B LTR ERVK 2 890 -12 1 1657 800 176 26 13 chr3 140563712 140563867 -19035916 + MurERV4_19-int LTR ERVK 1 157 -5623 1 1657 180 0 0 0 chr3 140563871 140563891 -19035892 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1 1657 230 29 0 56 chr3 140563889 140563925 -19035858 + (TTTTG)n Simple_repeat Simple_repeat 1 34 0 1 1657 1005 180 110 5 chr3 140563926 140564144 -19035639 + MurERV4_19-int LTR ERVK 161 401 -5379 1 1657 587 64 0 0 chr3 140564320 140564398 -19035385 + MTB LTR MaLR 323 400 0 1 1657 417 54 0 0 chr3 140565095 140565151 -19034632 + (CA)n Simple_repeat Simple_repeat 1 56 0 1 1657 1068 62 0 0 chr3 140565151 140565295 -19034488 + (GA)n Simple_repeat Simple_repeat 2 146 0 1 1657 199 302 104 48 chr3 140565596 140565721 -19034062 + MIR SINE MIR 84 215 -47 1 1657 454 266 157 5 chr3 140565989 140566193 -19033590 - Lx9 LINE L1 -887 6757 6523 1 1657 430 135 9 9 chr3 140566722 140566827 -19032956 + (TG)n Simple_repeat Simple_repeat 2 106 0 1 1657 438 220 24 24 chr3 140566847 140567057 -19032726 + (TG)n Simple_repeat Simple_repeat 1 210 0 1 1657 463 74 25 0 chr3 140567069 140567150 -19032633 + (TG)n Simple_repeat Simple_repeat 2 84 0 1 1657 224 309 15 0 chr3 140567660 140567728 -19032055 - MIRb SINE MIR -2 266 198 1 1657 467 335 119 28 chr3 140567920 140568282 -19031501 - MLT1C LTR MaLR -9 458 64 1 1657 442 376 26 21 chr3 140568433 140568626 -19031157 + MER54A LTR ERVL 231 424 -477 1 1657 1549 272 25 11 chr3 140568704 140569139 -19030644 - Lx6 LINE L1 -6 7454 7014 1 1657 386 310 98 30 chr3 140569236 140569605 -19030178 - L1MD3 LINE L1 -261 7734 7341 1 1657 374 85 0 17 chr3 140569608 140569668 -19030115 + (TATG)n Simple_repeat Simple_repeat 2 60 0 1 1657 1643 109 39 0 chr3 140569975 140570259 -19029524 + RLTR10A LTR ERVK 117 411 0 1 1657 325 280 40 45 chr3 140570262 140570330 -19029453 - L1MD3 LINE L1 -900 7095 7025 1 1657 1003 194 22 43 chr3 140570330 140570561 -19029222 + URR1A DNA MER1_type 1 226 0 1 1657 325 280 40 45 chr3 140570561 140570668 -19029115 - L1MD3 LINE L1 -971 7024 6921 1 1657 229 178 0 22 chr3 140570993 140571039 -19028744 - L1MD3 LINE L1 -2419 5576 5532 1 1657 328 317 18 13 chr3 140571041 140571324 -19028459 + L1MD LINE L1 4432 4713 -1433 1 1657 252 0 0 0 chr3 140571338 140571366 -19028417 + (CA)n Simple_repeat Simple_repeat 2 29 0 1 1657 263 262 0 23 chr3 140571433 140571519 -19028264 + Lx7 LINE L1 7613 7696 0 1 1657 312 294 72 80 chr3 140571538 140571775 -19028008 + L1MD LINE L1 4852 5086 -1060 1 1657 27 29 0 0 chr3 140572496 140572530 -19027253 + AT_rich Low_complexity Low_complexity 1 34 0 1 1657 225 0 0 0 chr3 140572698 140572723 -19027060 + (A)n Simple_repeat Simple_repeat 1 25 0 1 1657 34 0 0 0 chr3 140574293 140574327 -19025456 + AT_rich Low_complexity Low_complexity 1 34 0 1 1657 182 294 71 58 chr3 140574604 140574759 -19025024 - L2c LINE L2 -1 3386 3230 1 1657 351 0 0 0 chr3 140576321 140576360 -19023423 + (TG)n Simple_repeat Simple_repeat 1 39 0 1 1657 612 27 0 0 chr3 140576360 140576433 -19023350 + (GA)n Simple_repeat Simple_repeat 1 74 0 1 1657 3090 153 79 0 chr3 140576757 140577301 -19022482 - Lx2 LINE L1 0 6997 6411 1 1657 655 296 44 5 chr3 140578524 140578536 -19021247 - B3 SINE B2 -4 212 201 1 1657 675 67 0 0 chr3 140578536 140578625 -19021158 + (TATTG)n Simple_repeat Simple_repeat 2 90 0 1 1657 655 296 44 5 chr3 140578625 140578816 -19020967 - B3 SINE B2 -16 200 2 1 1657 29 0 0 0 chr3 140579284 140579313 -19020470 + AT_rich Low_complexity Low_complexity 1 29 0 1 1657 1322 191 135 0 chr3 140579757 140580045 -19019738 - RMER6D LTR ERVK 0 720 394 1 1657 655 274 230 0 chr3 140580155 140580403 -19019380 - MTC-int LTR MaLR -266 992 688 1 1657 264 274 192 51 chr3 140580405 140580582 -19019201 + MTD-int LTR MaLR 1035 1236 -22 1 1657 297 75 0 0 chr3 140580582 140580622 -19019161 + (TTTG)n Simple_repeat Simple_repeat 1 40 0 1 1657 1371 247 84 26 chr3 140580624 140581007 -19018776 + MTD LTR MaLR 3 407 -12 1 1657 686 317 68 19 chr3 140581020 140581447 -19018336 - Lx7 LINE L1 -1608 6088 5641 1 1657 1819 181 47 11 chr3 140581449 140581813 -19017970 + Lx4A LINE L1 6680 7056 -2 1 1657 1012 342 71 12 chr3 140581835 140582329 -19017454 + Lx7 LINE L1 6785 7307 -389 1 1657 3548 177 80 5 chr3 140582424 140583098 -19016685 - RMER19A LTR ERVK -12 725 1 1 1657 6342 217 54 9 chr3 140583107 140584150 -19015633 - Lx5 LINE L1 -96 6954 5854 1 1657 1848 133 17 72 chr3 140584150 140584498 -19015285 - ORR1A4 LTR MaLR 0 329 1 1 1657 6342 184 8 15 chr3 140584498 140584938 -19014845 - Lx5 LINE L1 -1197 5853 5406 1 1657 1719 169 6 71 chr3 140584940 140585290 -19014493 + ORR1A4 LTR MaLR 3 329 0 1 1657 2769 195 40 94 chr3 140585295 140586018 -19013765 - RMER12 LTR ERVK -638 684 1 1 1657 28 71 0 0 chr3 140586268 140586324 -19013459 + AT_rich Low_complexity Low_complexity 1 56 0 1 1657 510 319 21 0 chr3 140590106 140590250 -19009533 + RSINE1 SINE B4 2 148 -17 1 1657 216 0 0 0 chr3 140591728 140591752 -19008031 + (TCC)n Simple_repeat Simple_repeat 2 25 0 1 1657 932 53 38 0 chr3 140592189 140592320 -19007463 + B1_Mus2 SINE Alu 12 147 0 1 1657 360 0 0 0 chr3 140592331 140592371 -19007412 + (CAAAA)n Simple_repeat Simple_repeat 4 43 0 1 1657 204 240 0 0 chr3 140592580 140592630 -19007153 + (TA)n Simple_repeat Simple_repeat 2 51 0 1 1657 414 79 0 0 chr3 140592976 140593039 -19006744 + (CA)n Simple_repeat Simple_repeat 2 64 0 1 1657 249 296 25 0 chr3 140594154 140594235 -19005548 + GA-rich Low_complexity Low_complexity 6 88 0 1 1657 798 67 0 0 chr3 140595966 140596071 -19003712 + (GAAA)n Simple_repeat Simple_repeat 2 106 0 1 1657 402 301 128 0 chr3 140597454 140597610 -19002173 + Lx9 LINE L1 6856 7031 -613 1 1657 1316 62 0 11 chr3 140597610 140597790 -19001993 + (GAA)n Simple_repeat Simple_repeat 2 179 0 1 1657 792 119 52 7 chr3 140597793 140598068 -19001715 + GA-rich Low_complexity Low_complexity 1 287 0 1 1657 392 226 10 19 chr3 140598070 140598174 -19001609 + Lx9 LINE L1 7368 7470 -174 1 1657 197 254 97 14 chr3 140599049 140599121 -19000662 + L2b LINE L2 3293 3370 -5 1 1657 281 316 118 37 chr3 140599195 140599356 -19000427 - MLT1G3 LTR MaLR -259 336 163 1 1657 206 81 27 0 chr3 140599578 140599615 -19000168 + (CAAAA)n Simple_repeat Simple_repeat 2 39 0 1 1657 21 36 0 0 chr3 140599936 140599964 -18999819 + AT_rich Low_complexity Low_complexity 1 28 0 1 1657 267 344 84 0 chr3 140601277 140601431 -18998352 + Kanga2_a DNA Tc2 404 570 -318 1 1657 298 340 48 10 chr3 140602047 140602151 -18997632 + MIR SINE MIR 8 115 -147 1 1657 378 0 0 0 chr3 140602558 140602600 -18997183 + (CA)n Simple_repeat Simple_repeat 2 43 0 1 1657 622 396 35 14 chr3 140602600 140602882 -18996901 - B4A SINE B4 -2 290 3 1 1657 1061 29 15 0 chr3 140603093 140603229 -18996554 + (TCTA)n Simple_repeat Simple_repeat 3 140 0 1 1657 462 75 0 0 chr3 140603311 140603378 -18996405 + (TTGG)n Simple_repeat Simple_repeat 2 68 0 1 1657 242 229 33 0 chr3 140608363 140608424 -18991359 + MER58B DNA MER1_type 276 338 -3 1 1657 350 335 78 17 chr3 140608786 140608965 -18990818 + MLT2B4 LTR ERVL 13 202 -354 1 1657 314 303 79 69 chr3 140608975 140609187 -18990596 + MLT2B4 LTR ERVL 317 548 -6 1 1657 243 0 0 0 chr3 140609472 140609499 -18990284 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 1657 326 205 0 13 chr3 140609588 140609605 -18990178 + (CA)n Simple_repeat Simple_repeat 1 17 0 1 1657 699 12 0 0 chr3 140609605 140609685 -18990098 + (TC)n Simple_repeat Simple_repeat 1 80 0 1 1657 326 205 0 13 chr3 140609685 140609746 -18990037 + (CA)n Simple_repeat Simple_repeat 2 62 0 1 1657 663 265 56 28 chr3 140609857 140610144 -18989639 + L1M5 LINE L1 5261 5555 -889 1 1657 531 0 0 0 chr3 140610205 140610264 -18989519 + (TA)n Simple_repeat Simple_repeat 1 59 0 1 1657 1127 276 70 23 chr3 140610597 140611038 -18988745 + Lx9 LINE L1 7072 7533 -111 1 1657 518 275 49 14 chr3 140611049 140611193 -18988590 + B1_Mur2 SINE Alu 1 149 0 1 1657 22 0 0 0 chr3 140611719 140611741 -18988042 + AT_rich Low_complexity Low_complexity 1 22 0 1 1657 25 31 0 0 chr3 140612681 140612713 -18987070 + AT_rich Low_complexity Low_complexity 1 32 0 1 1657 486 61 0 0 chr3 140612977 140613043 -18986740 + (CA)n Simple_repeat Simple_repeat 1 66 0 1 1657 287 164 0 16 chr3 140613923 140613985 -18985798 + (TA)n Simple_repeat Simple_repeat 1 61 0 1 1657 357 24 0 0 chr3 140613985 140614027 -18985756 + (TG)n Simple_repeat Simple_repeat 1 42 0 1 1657 246 237 104 73 chr3 140616559 140616723 -18983060 - LTR48 LTR ERV1 -42 745 577 1 1657 278 274 25 102 chr3 140616884 140617002 -18982781 - LTR29 LTR ERV1 -513 109 1 1 1657 8079 10 0 0 chr3 140617837 140618750 -18981033 + L1Md_A LINE L1 4673 5585 -298 1 1657 7131 56 40 15 chr3 140618751 140619711 -18980072 + L1Md_A LINE L1 5587 6570 -12 1 1657 345 174 0 0 chr3 140619721 140619790 -18979993 + A-rich Low_complexity Low_complexity 1 69 0 1 1657 531 0 0 0 chr3 140620264 140620323 -18979460 + (TC)n Simple_repeat Simple_repeat 2 60 0 1 1657 570 15 0 0 chr3 140620323 140620389 -18979394 + (TG)n Simple_repeat Simple_repeat 2 68 0 1 1657 285 262 44 61 chr3 140621266 140621380 -18978403 - MTEb LTR MaLR -2 377 266 1 1657 366 109 0 0 chr3 140621487 140621542 -18978241 + BC1_Mm scRNA scRNA 40 94 -58 1 1657 274 368 38 35 chr3 140621895 140622182 -18977601 - B4A SINE B4 -4 288 1 1 1657 6919 94 28 3 chr3 140622330 140623321 -18976462 - Lx3_Mus LINE L1 -5 7004 5989 1 1657 9104 107 14 6 chr3 140623321 140624892 -18974891 + Lx3A LINE L1 5391 6976 -5 1 1657 1150 81 0 0 chr3 140625520 140625668 -18974115 + B1_Mus1 SINE Alu 1 148 0 1 1657 3372 84 20 5 chr3 140625731 140626305 -18973478 - Lx3_Mus LINE L1 -1031 5978 5397 1 1657 305 254 51 0 chr3 140626297 140626415 -18973368 - Lx9 LINE L1 -1 7643 7520 1 1657 3627 271 81 34 chr3 140626421 140627868 -18971915 + Lx9 LINE L1 5714 7329 -315 1 1657 2274 245 50 15 chr3 140627873 140628744 -18971039 - L1_Rod LINE L1 -3712 2135 751 1 1657 1101 57 0 0 chr3 140628744 140628885 -18970898 + (TCTCCC)n Simple_repeat Simple_repeat 4 144 0 1 1657 216 0 0 0 chr3 140628888 140628912 -18970871 + (TG)n Simple_repeat Simple_repeat 1 24 0 1 1657 2274 269 87 17 chr3 140628912 140629136 -18970647 - L1_Rod LINE L1 -6858 750 523 1 1657 2757 84 11 0 chr3 140629174 140629545 -18970238 + MTA_Mm LTR MaLR 1 375 -21 1 1657 3118 79 2 29 chr3 140629650 140630093 -18969690 - L1Md_F2 LINE L1 -4 6578 6148 1 1657 417 290 65 49 chr3 140630105 140630290 -18969493 + MER2 DNA MER2_type 145 332 -13 1 1657 548 279 108 42 chr3 140630299 140630512 -18969271 - MTE2a LTR MaLR -9 370 144 2 1657 414 0 0 0 chr3 140630513 140630559 -18969224 + (TA)n Simple_repeat Simple_repeat 1 46 0 2 1657 21 0 0 0 chr3 140630679 140630700 -18969083 + AT_rich Low_complexity Low_complexity 1 21 0 2 1657 346 386 105 22 chr3 140632602 140632915 -18966868 - MLT1J LTR MaLR -146 366 28 2 1657 537 58 0 0 chr3 140634136 140634205 -18965578 + (TA)n Simple_repeat Simple_repeat 2 70 0 2 1657 423 354 69 73 chr3 140634233 140634507 -18965276 + B4 SINE B4 2 274 -18 2 1657 417 95 0 0 chr3 140634574 140634637 -18965146 + (CA)n Simple_repeat Simple_repeat 2 64 0 2 1657 333 0 0 0 chr3 140634831 140634868 -18964915 + (CA)n Simple_repeat Simple_repeat 1 37 0 2 1657 34 89 0 0 chr3 140635616 140635706 -18964077 + AT_rich Low_complexity Low_complexity 1 90 0 2 1657 612 294 27 21 chr3 140635787 140635937 -18963846 + B3 SINE B2 1 148 -68 2 1657 311 78 0 19 chr3 140635937 140635989 -18963794 + (CA)n Simple_repeat Simple_repeat 2 52 0 2 1657 612 249 14 127 chr3 140635989 140636050 -18963733 + B3 SINE B2 140 188 -7 2 1657 260 70 23 0 chr3 140636434 140636477 -18963306 + (TTTG)n Simple_repeat Simple_repeat 3 46 0 2 1657 300 371 96 24 chr3 140636573 140636907 -18962876 - L1MDb LINE L1 -6011 398 41 2 1657 921 282 0 5 chr3 140637145 140637352 -18962431 + MER44C DNA MER2_type 207 412 -321 2 1657 342 369 64 5 chr3 140637387 140637591 -18962192 + MER44C DNA MER2_type 511 726 -7 2 1657 366 61 0 0 chr3 140637804 140637853 -18961930 + (CA)n Simple_repeat Simple_repeat 2 50 0 2 1657 582 0 39 0 chr3 140637853 140637930 -18961853 + (GA)n Simple_repeat Simple_repeat 2 82 0 2 1657 347 106 15 0 chr3 140639534 140639600 -18960183 + (CA)n Simple_repeat Simple_repeat 2 68 0 2 1657 342 0 0 0 chr3 140639871 140639909 -18959874 + (CATTT)n Simple_repeat Simple_repeat 4 41 0 2 207 1940 213 19 56 chr3 140639917 140640385 -18959398 - Lx4B LINE L1 -16 7042 6592 2 1658 6266 115 22 3 chr3 140640378 140641350 -18958433 - L1_Mus2 LINE L1 -436 5447 4458 2 1658 6199 102 30 24 chr3 140641337 140641536 -18958247 + L1_Mus2 LINE L1 5408 5607 -276 2 1658 2996 79 5 2 chr3 140641536 140641931 -18957852 - MTA_Mm LTR MaLR 0 396 1 2 1658 6805 97 26 75 chr3 140641931 140643086 -18956697 - MTA_Mm-int LTR MaLR 0 1098 1 2 1658 2933 91 2 10 chr3 140643086 140643485 -18956298 - MTA_Mm LTR MaLR 0 396 1 2 1658 6199 66 13 10 chr3 140643485 140644283 -18955500 + L1_Mus2 LINE L1 5608 6409 -157 2 1658 915 118 68 40 chr3 140644301 140644416 -18955367 - Lx2 LINE L1 -1 6996 6883 2 1658 216 0 0 0 chr3 140644416 140644440 -18955343 + (CCCA)n Simple_repeat Simple_repeat 1 24 0 2 1658 915 118 68 40 chr3 140644440 140644501 -18955282 - Lx2 LINE L1 -115 6882 6816 2 1658 395 276 110 0 chr3 140645132 140645259 -18954524 + B1F SINE Alu 1 141 -8 2 1658 204 200 0 0 chr3 140645849 140645904 -18953879 + (TCTG)n Simple_repeat Simple_repeat 4 58 0 2 1658 30 45 0 0 chr3 140646202 140646246 -18953537 + AT_rich Low_complexity Low_complexity 1 44 0 2 1658 257 315 69 103 chr3 140646346 140646491 -18953292 + B1F2 SINE Alu 2 141 -8 2 1658 243 343 71 0 chr3 140646620 140646719 -18953064 - MLT1A0 LTR MaLR -161 204 99 2 1658 183 345 33 33 chr3 140646895 140646955 -18952828 + MIR SINE MIR 14 73 -189 2 1658 450 0 0 0 chr3 140647327 140647377 -18952406 + (TAGA)n Simple_repeat Simple_repeat 4 53 0 2 1658 833 114 83 0 chr3 140647378 140647510 -18952273 - B1_Mus1 SINE Alu -5 143 1 2 1658 507 132 0 0 chr3 140647529 140647620 -18952163 + (CA)n Simple_repeat Simple_repeat 2 92 0 2 1658 720 273 70 0 chr3 140647814 140648041 -18951742 + Lx9 LINE L1 6777 7019 -625 2 1658 21 36 0 0 chr3 140648108 140648136 -18951647 + AT_rich Low_complexity Low_complexity 1 28 0 2 1658 270 152 29 57 chr3 140648151 140648221 -18951562 - MT2B LTR ERVL 0 584 517 2 1658 265 213 66 0 chr3 140648222 140648358 -18951425 + (TA)n Simple_repeat Simple_repeat 1 145 0 2 1658 1191 209 66 38 chr3 140648358 140648576 -18951207 - MT2B LTR ERVL -47 554 340 2 1658 1484 51 0 0 chr3 140648576 140648753 -18951030 + B2_Mm1a SINE B2 2 178 -15 2 1658 360 0 0 0 chr3 140648753 140648793 -18950990 + (GAAAA)n Simple_repeat Simple_repeat 4 43 0 2 1658 1191 209 66 38 chr3 140648793 140648862 -18950921 - MT2B LTR ERVL -262 339 259 2 1658 716 192 0 16 chr3 140648849 140648976 -18950807 - MT2B LTR ERVL -476 125 1 2 1658 3535 188 9 5 chr3 140649018 140649655 -18950128 - ORR1A3-int LTR MaLR -1323 640 1 2 1658 1955 221 103 8 chr3 140649658 140650151 -18949632 + Lx9 LINE L1 7097 7636 -8 2 1658 1217 182 57 240 chr3 140650205 140650675 -18949108 - ORR1C2 LTR MaLR 0 384 1 2 1658 1076 175 111 35 chr3 140653296 140653410 -18946373 + L1_Mur3 LINE L1 2610 2725 -3155 2 1658 207 69 0 0 chr3 140653410 140653439 -18946344 + (CAA)n Simple_repeat Simple_repeat 1 29 0 2 1658 1076 175 111 35 chr3 140653439 140653585 -18946198 + L1_Mur3 LINE L1 2726 2888 -2992 2 1658 440 259 98 57 chr3 140653585 140653802 -18945981 + RLTR11B LTR ERVK 1 255 -273 2 1658 2605 158 29 2 chr3 140653802 140654283 -18945500 + Lx2 LINE L1 6504 6997 0 2 1658 408 308 171 51 chr3 140654283 140654506 -18945277 + RLTR11B LTR ERVK 256 510 -18 2 1658 8678 180 58 16 chr3 140654563 140655130 -18944653 + L1_Mur3 LINE L1 2886 3471 -2409 2 1658 432 0 0 0 chr3 140655130 140655178 -18944605 + (CA)n Simple_repeat Simple_repeat 1 48 0 2 1658 8678 180 58 16 chr3 140655178 140656581 -18943202 + L1_Mur3 LINE L1 3472 4938 -942 2 1658 1254 206 246 72 chr3 140658962 140659678 -18940105 + RMER6A LTR ERVK 1 718 -2 2 1658 26 0 0 0 chr3 140659683 140659709 -18940074 + AT_rich Low_complexity Low_complexity 1 26 0 2 1658 1333 61 66 0 chr3 140660032 140660213 -18939570 + B2_Mm2 SINE B2 2 194 -1 2 1658 1574 264 23 37 chr3 140660265 140660701 -18939082 + Lx6 LINE L1 7006 7435 -25 2 1658 238 274 181 0 chr3 140661830 140662019 -18937764 - Lx8 LINE L1 -2 7471 7230 2 1658 5613 101 8 18 chr3 140662003 140663090 -18936693 + L1_Mus4 LINE L1 5301 6371 -265 2 1658 1132 349 55 45 chr3 140663118 140663893 -18935890 - Lx8 LINE L1 -700 6773 5991 2 1658 581 204 7 42 chr3 140663895 140664038 -18935745 - ORR1D2 LTR MaLR 0 370 233 2 1658 558 256 47 53 chr3 140664444 140664613 -18935170 - ORR1D2 LTR MaLR -143 227 60 2 1658 1528 229 43 27 chr3 140664612 140664984 -18934799 + MTD LTR MaLR 8 385 -34 2 1658 527 303 61 32 chr3 140665279 140665559 -18934224 + MER20B DNA MER1_type 495 782 -1 2 1658 2691 158 20 4 chr3 140665668 140666127 -18933656 - Lx LINE L1 0 6654 6189 2 1658 182 365 52 10 chr3 140666217 140666314 -18933469 - MIR SINE MIR -71 191 91 2 1658 1990 241 7 85 chr3 140666606 140667159 -18932624 + RLTR18B LTR ERVK 1 510 -2 2 1658 288 111 0 0 chr3 140667553 140667598 -18932185 + (CA)n Simple_repeat Simple_repeat 2 46 0 2 1658 1444 186 18 47 chr3 140668966 140669305 -18930478 + ORR1A4 LTR MaLR 1 329 0 2 1658 24 32 0 0 chr3 140669528 140669559 -18930224 + AT_rich Low_complexity Low_complexity 1 31 0 2 1658 378 346 143 17 chr3 140670516 140670810 -18928973 + L1MC2 LINE L1 5989 6319 -25 2 1658 290 360 88 0 chr3 140670828 140670975 -18928808 + RSINE1 SINE B4 2 161 -4 2 1658 28 91 0 0 chr3 140671138 140671215 -18928568 + AT_rich Low_complexity Low_complexity 1 77 0 2 1658 765 225 0 0 chr3 140671220 140671362 -18928421 + B1_Mur4 SINE Alu 2 143 -7 2 1658 5822 148 29 14 chr3 140671368 140671427 -18928356 + Lx4B LINE L1 4857 4933 -944 2 1658 414 0 0 0 chr3 140671427 140671473 -18928310 + (TA)n Simple_repeat Simple_repeat 2 47 0 2 1658 5822 154 43 19 chr3 140671473 140672896 -18926887 + Lx4B LINE L1 4934 6402 -656 2 1658 234 203 13 26 chr3 140672875 140672951 -18926832 + Lx3B LINE L1 6894 6968 -5 2 1658 26 0 0 0 chr3 140672989 140673015 -18926768 + AT_rich Low_complexity Low_complexity 1 26 0 2 1658 283 146 0 0 chr3 140673015 140673063 -18926720 + Lx4B LINE L1 6372 6419 -639 2 1658 1431 174 0 11 chr3 140673070 140673343 -18926440 + Lx4B LINE L1 6772 7041 -17 2 1658 1141 82 0 0 chr3 140673375 140673522 -18926261 - B1_Mus1 SINE Alu -1 147 1 2 1658 24 32 0 0 chr3 140673523 140673554 -18926229 + AT_rich Low_complexity Low_complexity 1 31 0 2 1658 278 169 15 0 chr3 140674609 140674674 -18925109 + (TG)n Simple_repeat Simple_repeat 2 67 0 2 1658 219 36 0 0 chr3 140674848 140674876 -18924907 + (T)n Simple_repeat Simple_repeat 1 28 0 2 1658 239 362 0 0 chr3 140675395 140675489 -18924294 + GA-rich Low_complexity Low_complexity 4 97 0 2 1658 221 83 28 0 chr3 140677576 140677612 -18922171 + (TTTA)n Simple_repeat Simple_repeat 2 38 0 2 1658 7744 135 38 21 chr3 140677630 140677660 -18922123 - Lx3C LINE L1 -7 6969 6929 2 1658 3374 26 134 0 chr3 140677660 140678079 -18921704 + IAPLTR2_Mm LTR ERVK 1 475 0 2 1658 7744 135 38 21 chr3 140678079 140679352 -18920431 - Lx3C LINE L1 -48 6928 5644 2 1658 7863 153 40 13 chr3 140679352 140681042 -18918741 + Lx4A LINE L1 5268 7029 -29 2 1658 406 311 74 35 chr3 140681050 140681414 -18918369 - Lx7 LINE L1 -1558 5915 5497 2 1658 23 33 0 0 chr3 140681648 140681678 -18918105 + AT_rich Low_complexity Low_complexity 1 30 0 2 1658 378 0 0 0 chr3 140682233 140682275 -18917508 + (TG)n Simple_repeat Simple_repeat 1 42 0 2 1658 468 51 0 0 chr3 140684086 140684145 -18915638 + (GAAA)n Simple_repeat Simple_repeat 1 59 0 2 1658 600 14 0 0 chr3 140684145 140684213 -18915570 + (GGGA)n Simple_repeat Simple_repeat 4 72 0 2 1658 21 0 0 0 chr3 140684651 140684672 -18915111 + AT_rich Low_complexity Low_complexity 1 21 0 2 1658 290 98 0 19 chr3 140685387 140685439 -18914344 + (TA)n Simple_repeat Simple_repeat 1 51 0 2 1658 248 312 12 0 chr3 140685898 140685978 -18913805 - ORR1E LTR MaLR 0 379 299 2 1658 294 347 53 46 chr3 140686030 140686181 -18913602 - ORR1E LTR MaLR -168 191 40 2 1658 2152 127 59 3 chr3 140686444 140686690 -18913093 + Lx2 LINE L1 6623 6880 -117 2 1658 234 0 0 0 chr3 140686690 140686716 -18913067 + (TGGG)n Simple_repeat Simple_repeat 3 28 0 2 1658 2152 127 59 3 chr3 140686716 140686824 -18912959 + Lx2 LINE L1 6881 6996 -1 2 1658 671 261 9 19 chr3 140687880 140688095 -18911688 - Lx6 LINE L1 -2 7458 7246 2 1658 23 33 0 0 chr3 140688545 140688575 -18911208 + AT_rich Low_complexity Low_complexity 1 30 0 2 1658 364 160 10 39 chr3 140689159 140689263 -18910520 + (TA)n Simple_repeat Simple_repeat 2 102 0 2 1658 481 329 50 50 chr3 140689263 140689564 -18910219 - MT2A LTR ERVL -44 489 189 2 1658 22 56 0 0 chr3 140689875 140689911 -18909872 + AT_rich Low_complexity Low_complexity 1 36 0 2 1658 235 297 79 63 chr3 140690921 140691047 -18908736 - MIR SINE MIR -51 211 84 2 1658 309 340 137 5 chr3 140691111 140691330 -18908453 - MLT2B2 LTR ERVL -7 508 261 2 1658 337 288 107 27 chr3 140691391 140691541 -18908242 - MLT2B2 LTR ERVL -348 167 6 2 1658 234 301 0 18 chr3 140691545 140691645 -18908138 + CT-rich Low_complexity Low_complexity 1 98 0 2 1658 188 56 83 0 chr3 140692324 140692360 -18907423 + (TTTTTG)n Simple_repeat Simple_repeat 2 40 0 2 1658 7346 119 14 5 chr3 140692799 140694753 -18905030 - L1_Mus4 LINE L1 -7 6629 4659 2 1658 3900 145 3 9 chr3 140694754 140695502 -18904281 + L1VL4 LINE L1 281 1023 -2536 2 1658 216 292 96 14 chr3 140695513 140695586 -18904197 + MIRb SINE MIR 77 155 -113 2 1658 1044 136 0 0 chr3 140696381 140696557 -18903226 + (GAAA)n Simple_repeat Simple_repeat 3 178 0 2 1658 215 135 27 0 chr3 140696557 140696594 -18903189 + GA-rich Low_complexity Low_complexity 1 38 0 3 1658 264 372 87 7 chr3 140698125 140698263 -18901520 - MIRc SINE MIR -96 172 24 3 1658 432 0 0 0 chr3 140698367 140698415 -18901368 + (TC)n Simple_repeat Simple_repeat 1 48 0 3 1658 342 0 0 0 chr3 140698415 140698452 -18901331 + (CA)n Simple_repeat Simple_repeat 1 38 0 3 1658 5640 63 1 34 chr3 140699418 140699681 -18900102 - L1Md_F2 LINE L1 0 6582 6326 3 1658 2203 84 132 11 chr3 140699681 140700029 -18899754 + RLTR10 LTR ERVK 1 390 0 3 1658 5640 63 1 34 chr3 140700029 140700537 -18899246 - L1Md_F2 LINE L1 -257 6325 5836 3 1658 191 204 20 0 chr3 140700570 140700619 -18899164 + (TTTG)n Simple_repeat Simple_repeat 2 51 0 3 1658 220 184 0 0 chr3 140700632 140700670 -18899113 + GA-rich Low_complexity Low_complexity 1 38 0 3 1658 413 292 73 51 chr3 140700670 140700807 -18898976 - RSINE1 SINE B4 -15 150 11 3 1658 236 324 51 82 chr3 140700969 140701127 -18898656 - LTR41B LTR ERVL -605 153 1 3 1658 458 178 29 52 chr3 140701675 140701811 -18897972 - Lx9 LINE L1 -8 7636 7504 3 1658 420 381 99 27 chr3 140702186 140702861 -18896922 - ERVL-E-int LTR ERVL -3198 2469 1746 3 1658 1324 99 0 24 chr3 140703362 140703568 -18896215 - Lx LINE L1 -1 6653 6453 3 1658 393 22 0 0 chr3 140703992 140704038 -18895745 + (TA)n Simple_repeat Simple_repeat 1 46 0 3 1658 353 262 98 19 chr3 140704048 140704302 -18895481 - L1MEg LINE L1 -4685 1730 1372 3 1658 332 373 112 14 chr3 140704435 140704650 -18895133 - B4A SINE B4 -22 270 35 3 1658 464 308 136 25 chr3 140705802 140706155 -18893628 + Lx9 LINE L1 7091 7482 -162 3 1658 461 330 15 30 chr3 140706280 140706477 -18893306 + B3A SINE B2 5 198 0 3 1658 1182 55 0 0 chr3 140707245 140707391 -18892392 + B1_Mus2 SINE Alu 2 147 0 3 1658 306 67 0 0 chr3 140707415 140707460 -18892323 + (CA)n Simple_repeat Simple_repeat 2 46 0 3 1658 291 230 0 0 chr3 140707569 140707656 -18892127 + (CA)n Simple_repeat Simple_repeat 2 88 0 3 1658 403 226 8 8 chr3 140707657 140707791 -18891992 + (TA)n Simple_repeat Simple_repeat 2 135 0 3 1658 366 23 0 0 chr3 140708133 140708176 -18891607 + (CAAAA)n Simple_repeat Simple_repeat 3 45 0 3 1658 236 365 29 119 chr3 140708282 140708525 -18891258 - MLT1D LTR MaLR -225 324 104 3 1658 211 256 0 0 chr3 140708783 140708826 -18890957 + G-rich Low_complexity Low_complexity 1 43 0 3 1658 320 276 98 16 chr3 140708942 140709079 -18890704 - MLT1D LTR MaLR -494 133 1 3 1658 1410 282 80 3 chr3 140709241 140709628 -18890155 + MTD LTR MaLR 3 419 0 3 1658 1233 90 51 0 chr3 140710730 140710907 -18888876 + B2_Mm2 SINE B2 2 187 -8 3 1658 29 0 0 0 chr3 140710909 140710938 -18888845 + AT_rich Low_complexity Low_complexity 1 29 0 3 1658 243 0 0 0 chr3 140711014 140711041 -18888742 + (TTA)n Simple_repeat Simple_repeat 1 27 0 3 1658 203 152 0 0 chr3 140711042 140711075 -18888708 + (CAT)n Simple_repeat Simple_repeat 1 33 0 3 1658 441 66 0 0 chr3 140711075 140711136 -18888647 + (TA)n Simple_repeat Simple_repeat 2 62 0 3 1658 394 369 66 39 chr3 140712106 140712411 -18887372 + LTR40a LTR ERVL 197 509 -10 3 1658 21 0 0 0 chr3 140713052 140713073 -18886710 + AT_rich Low_complexity Low_complexity 1 21 0 3 1658 190 313 124 53 chr3 140713762 140713971 -18885812 + L2c LINE L2 2925 3148 -239 3 1658 994 88 0 0 chr3 140715479 140715616 -18884167 - L1_Mus2 LINE L1 0 6566 6430 3 1658 873 201 26 0 chr3 140715637 140715826 -18883957 + Lx4B LINE L1 3615 3808 -2069 3 1658 35426 42 8 3 chr3 140715848 140721014 -18878769 + L1Md_T LINE L1 298 5589 -297 3 1658 8371 31 0 0 chr3 140721014 140721999 -18877784 + L1Md_T LINE L1 5590 6574 -11 3 1658 308 133 33 0 chr3 140722006 140722066 -18877717 + Lx4B LINE L1 3805 3866 -2011 3 1658 312 65 22 0 chr3 140722084 140722130 -18877653 - B1_Mus2 SINE Alu -9 138 92 3 1658 1376 145 49 8 chr3 140722130 140722394 -18877389 + Lx4B LINE L1 3857 4131 -1746 3 1658 540 0 0 0 chr3 140722396 140722456 -18877327 + (TA)n Simple_repeat Simple_repeat 2 61 0 3 1658 463 141 77 0 chr3 140722456 140722534 -18877249 + Lx4B LINE L1 6391 6474 -584 3 1658 456 35 0 0 chr3 140722535 140722593 -18877190 + (TAGA)n Simple_repeat Simple_repeat 1 58 0 3 1658 2190 213 44 8 chr3 140722593 140723090 -18876693 + Lx4B LINE L1 5242 5756 -121 3 1658 706 147 38 30 chr3 140723093 140723226 -18876557 + ORR1A1-int LTR MaLR 1659 1792 0 3 1658 2608 73 18 0 chr3 140723226 140723506 -18876277 + ORR1A1 LTR MaLR 1 280 -66 3 1658 221 0 0 33 chr3 140723506 140723536 -18876247 + (TTG)n Simple_repeat Simple_repeat 2 30 0 3 1658 2608 73 18 0 chr3 140723536 140723595 -18876188 + ORR1A1 LTR MaLR 281 345 -1 3 1658 4305 186 125 47 chr3 140723595 140724714 -18875069 + Lx4B LINE L1 5792 6998 -60 3 1658 217 283 190 8 chr3 140724936 140725057 -18874726 + L2 LINE L2 2253 2395 -1024 3 1658 186 191 0 0 chr3 140725076 140725118 -18874665 + (TATATG)n Simple_repeat Simple_repeat 4 45 0 3 1658 25124 76 3 13 chr3 140725455 140728900 -18870883 + L1Md_F2 LINE L1 2177 5586 -297 3 1658 7780 55 5 2 chr3 140728900 140729879 -18869904 + L1Md_F2 LINE L1 5587 6568 -14 3 1658 204 111 0 0 chr3 140730021 140730057 -18869726 + (TAAA)n Simple_repeat Simple_repeat 3 38 0 3 1658 239 297 60 1 chr3 140730368 140730458 -18869325 + B1F SINE Alu 17 108 -9 3 1658 280 323 68 8 chr3 140730913 140731163 -18868620 + L1M5 LINE L1 2735 2999 -3147 3 1658 27 73 0 0 chr3 140731221 140731276 -18868507 + AT_rich Low_complexity Low_complexity 1 55 0 3 1658 213 178 0 61 chr3 140731619 140731685 -18868098 + A-rich Low_complexity Low_complexity 4 65 0 3 1658 476 250 31 15 chr3 140731908 140732038 -18867745 + RSINE1 SINE B4 25 156 -9 3 1658 206 116 23 0 chr3 140732999 140733042 -18866741 + (TTTTTA)n Simple_repeat Simple_repeat 2 45 0 3 1658 195 42 0 0 chr3 140733450 140733474 -18866309 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 3 1658 472 15 0 30 chr3 140734107 140734174 -18865609 + (TAA)n Simple_repeat Simple_repeat 2 66 0 3 1658 2734 68 5 11 chr3 140734315 140734684 -18865099 - L1Md_F2 LINE L1 -19 6563 6197 3 1658 519 17 0 0 chr3 140734708 140734768 -18865015 + (GA)n Simple_repeat Simple_repeat 1 60 0 3 1658 289 284 78 37 chr3 140734773 140735069 -18864714 + L1M2 LINE L1 3271 3578 -2565 3 1658 5997 117 66 9 chr3 140735342 140736285 -18863498 + Lx3A LINE L1 5968 6965 -16 3 1658 1104 126 0 0 chr3 140736285 140736459 -18863324 + (GAAA)n Simple_repeat Simple_repeat 4 177 0 3 1658 382 211 67 50 chr3 140736503 140736623 -18863160 + ORR1D1 LTR MaLR 253 374 0 3 1658 6989 44 1 3 chr3 140736844 140737697 -18862086 - L1Md_F2 LINE L1 -7 6575 5725 3 1658 25 51 0 0 chr3 140737759 140737798 -18861985 + AT_rich Low_complexity Low_complexity 1 39 0 3 1658 208 305 82 45 chr3 140738302 140738436 -18861347 - L2b LINE L2 -308 3067 2929 3 1658 768 77 0 0 chr3 140739214 140739318 -18860465 + (TTCC)n Simple_repeat Simple_repeat 4 107 0 3 1658 611 309 32 57 chr3 140739410 140739691 -18860092 - B4A SINE B4 -18 274 1 3 1658 348 24 0 0 chr3 140740357 140740398 -18859385 + (TCTG)n Simple_repeat Simple_repeat 4 44 0 3 1658 219 167 0 0 chr3 140740442 140740484 -18859299 + CT-rich Low_complexity Low_complexity 4 45 0 3 1658 528 59 0 0 chr3 140741010 140741078 -18858705 + (T)n Simple_repeat Simple_repeat 1 68 0 3 1658 25 51 0 0 chr3 140741468 140741507 -18858276 + AT_rich Low_complexity Low_complexity 1 39 0 3 1658 217 196 0 35 chr3 140741767 140741825 -18857958 + T-rich Low_complexity Low_complexity 2 57 0 3 1658 434 121 9 66 chr3 140742375 140742481 -18857302 - Lx LINE L1 -1 6653 6554 3 1658 302 67 22 0 chr3 140743560 140743605 -18856178 + (TTGG)n Simple_repeat Simple_repeat 2 47 0 3 1658 21 57 0 0 chr3 140743819 140743854 -18855929 + AT_rich Low_complexity Low_complexity 1 35 0 3 1658 1739 84 26 11 chr3 140744066 140744330 -18855453 - L1_Mus3 LINE L1 0 6638 6371 3 1658 23 0 0 0 chr3 140744441 140744464 -18855319 + AT_rich Low_complexity Low_complexity 1 23 0 3 1658 834 70 0 0 chr3 140744831 140744945 -18854838 + (TG)n Simple_repeat Simple_repeat 2 115 0 3 1658 180 0 0 0 chr3 140745097 140745117 -18854666 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 3 1658 2989 175 20 2 chr3 140745117 140745672 -18854111 - Lx4A LINE L1 -4 7054 6490 3 1658 758 275 123 25 chr3 140746433 140746750 -18853033 - MTD LTR MaLR -8 411 64 3 1658 6107 64 0 1 chr3 140746770 140747555 -18852228 + L1Md_F2 LINE L1 5791 6574 -8 3 1658 353 98 49 0 chr3 140747813 140747874 -18851909 + (CATATA)n Simple_repeat Simple_repeat 6 69 0 3 1658 387 0 0 0 chr3 140748217 140748260 -18851523 + (TG)n Simple_repeat Simple_repeat 1 43 0 3 1658 432 0 0 0 chr3 140748260 140748307 -18851476 + (GA)n Simple_repeat Simple_repeat 1 48 0 3 1658 216 135 0 0 chr3 140749992 140750029 -18849754 + (CAGA)n Simple_repeat Simple_repeat 3 39 0 3 1658 22 56 0 0 chr3 140750168 140750204 -18849579 + AT_rich Low_complexity Low_complexity 1 36 0 3 1658 1160 288 62 40 chr3 140751952 140752744 -18847039 + L1MB1 LINE L1 5066 5887 -281 3 1658 304 274 53 30 chr3 140752747 140752879 -18846904 + L1MB1 LINE L1 6033 6167 -1 3 1658 279 264 67 33 chr3 140752929 140753019 -18846764 + MER46C DNA MER2_type 245 337 -1 3 1658 730 302 38 13 chr3 140753572 140753810 -18845973 - B4A SINE B4 -18 274 31 3 1658 205 292 0 30 chr3 140754410 140754477 -18845306 + G-rich Low_complexity Low_complexity 3 67 0 3 1658 182 108 0 51 chr3 140754688 140754727 -18845056 + (TTATA)n Simple_repeat Simple_repeat 3 39 0 3 1658 274 40 39 39 chr3 140755651 140755703 -18844080 + (TTTTTG)n Simple_repeat Simple_repeat 2 53 0 3 1658 3438 71 0 15 chr3 140755708 140756180 -18843603 - L1Md_F2 LINE L1 -3 6579 6115 3 1658 540 0 0 0 chr3 140757654 140757714 -18842069 + (GA)n Simple_repeat Simple_repeat 2 61 0 3 1658 381 240 160 0 chr3 140758116 140758216 -18841567 - Tigger5 DNA MER2_type -1 2405 2290 3 1658 511 329 39 0 chr3 140758215 140758370 -18841413 - Tigger5 DNA MER2_type -2167 239 79 3 1658 22 0 0 0 chr3 140758398 140758420 -18841363 + AT_rich Low_complexity Low_complexity 1 22 0 3 1658 208 326 31 52 chr3 140760119 140760216 -18839567 - MER5A DNA MER1_type 0 189 95 3 1658 956 128 0 6 chr3 140760354 140760534 -18839249 + (GGA)n Simple_repeat Simple_repeat 2 180 0 3 1658 236 280 13 13 chr3 140761642 140761718 -18838065 - ID4 SINE ID -3 80 5 3 1658 280 348 53 21 chr3 140761742 140761930 -18837853 + MIR SINE MIR 69 262 0 3 1658 422 50 33 0 chr3 140763788 140763848 -18835935 + (GGAA)n Simple_repeat Simple_repeat 3 64 0 4 1658 974 33 8 0 chr3 140763849 140763971 -18835812 + (GGGAA)n Simple_repeat Simple_repeat 4 126 0 4 1658 1049 207 19 5 chr3 140764423 140764632 -18835151 - Lx4A LINE L1 -4 7054 6843 4 1658 494 197 46 23 chr3 140764864 140764994 -18834789 + L1_Mur3 LINE L1 3670 3802 -2078 4 1658 22 0 0 0 chr3 140767045 140767067 -18832716 + AT_rich Low_complexity Low_complexity 1 22 0 4 1658 279 0 0 0 chr3 140767191 140767222 -18832561 + (TA)n Simple_repeat Simple_repeat 2 32 0 4 1658 21 0 0 0 chr3 140767334 140767355 -18832428 + AT_rich Low_complexity Low_complexity 1 21 0 4 1658 29 78 0 0 chr3 140767773 140767837 -18831946 + AT_rich Low_complexity Low_complexity 1 64 0 4 1658 1088 68 7 0 chr3 140767843 140767989 -18831794 - Lx2 LINE L1 -1086 5911 5765 4 1658 369 0 0 0 chr3 140771226 140771267 -18828516 + (CA)n Simple_repeat Simple_repeat 2 42 0 4 1659 825 40 0 0 chr3 140773070 140773171 -18826612 + (TTC)n Simple_repeat Simple_repeat 2 102 0 4 1659 26 0 0 0 chr3 140773273 140773299 -18826484 + AT_rich Low_complexity Low_complexity 1 26 0 4 1659 441 0 0 0 chr3 140774799 140774848 -18824935 + (T)n Simple_repeat Simple_repeat 1 49 0 4 1659 301 302 89 58 chr3 140777992 140778319 -18821464 - L1M5 LINE L1 -3542 2604 2268 4 1659 288 0 0 0 chr3 140779612 140779644 -18820139 + (TC)n Simple_repeat Simple_repeat 2 33 0 4 1659 225 0 0 0 chr3 140779644 140779668 -18820115 + (TG)n Simple_repeat Simple_repeat 2 26 0 4 1659 563 102 11 0 chr3 140779682 140779770 -18820013 + (TTTC)n Simple_repeat Simple_repeat 3 91 0 4 1659 24 0 0 0 chr3 140780618 140780642 -18819141 + AT_rich Low_complexity Low_complexity 1 24 0 4 1659 23 92 0 0 chr3 140780982 140781047 -18818736 + AT_rich Low_complexity Low_complexity 1 65 0 4 1659 2723 61 14 11 chr3 140781149 140781512 -18818271 + L1Md_F2 LINE L1 6179 6542 -40 4 1659 317 75 0 19 chr3 140781512 140781566 -18818217 + (TAAA)n Simple_repeat Simple_repeat 1 53 0 4 1659 324 420 22 7 chr3 140781602 140781741 -18818042 + RSINE1 SINE B4 2 142 -23 4 1659 465 371 123 0 chr3 140781891 140782249 -18817534 + Lx8 LINE L1 6770 7171 -302 4 1659 189 0 0 0 chr3 140782375 140782396 -18817387 + (CA)n Simple_repeat Simple_repeat 2 22 0 4 1659 372 198 144 59 chr3 140782917 140783035 -18816748 + MER65D LTR ERV1 1 128 -345 4 1659 525 32 0 0 chr3 140783910 140783973 -18815810 + (GGAA)n Simple_repeat Simple_repeat 4 66 0 4 1659 283 269 196 35 chr3 140784011 140784222 -18815561 + MLT1A1 LTR MaLR 48 299 -66 4 1659 288 77 0 0 chr3 140784292 140784331 -18815452 + (A)n Simple_repeat Simple_repeat 1 39 0 4 1659 1183 48 0 0 chr3 140784568 140784713 -18815070 - B1_Mm SINE Alu -1 146 2 4 1659 225 130 22 0 chr3 140784713 140784759 -18815024 - L1M2 LINE L1 -1818 4325 4279 4 1659 441 0 0 0 chr3 140785086 140785135 -18814648 + (TAAA)n Simple_repeat Simple_repeat 3 51 0 4 1659 1185 136 140 0 chr3 140785135 140785356 -18814427 - Lx3_Mus LINE L1 -19 6990 6739 4 1659 227 276 117 62 chr3 140785726 140785966 -18813817 - L1M4 LINE L1 -1378 4768 4516 4 1659 1019 306 86 36 chr3 140786033 140786855 -18812928 - L1MC LINE L1 -1819 4327 3465 4 1659 1374 17 11 6 chr3 140786908 140787086 -18812697 + (TG)n Simple_repeat Simple_repeat 2 180 0 4 1659 469 294 42 8 chr3 140787087 140787207 -18812576 - RSINE1 SINE B4 -22 143 20 4 1659 1231 273 158 10 chr3 140787607 140788404 -18811379 - L1MC LINE L1 -2997 3149 2235 4 1659 383 311 90 0 chr3 140788417 140788594 -18811189 - LTR48B LTR ERV1 -6 638 446 4 1659 21 0 0 0 chr3 140788771 140788792 -18810991 + AT_rich Low_complexity Low_complexity 1 21 0 4 1659 3474 145 79 55 chr3 140789435 140789658 -18810125 - RLTR25A LTR ERVK -5 1098 883 4 1659 405 0 0 0 chr3 140789658 140789703 -18810080 + (TG)n Simple_repeat Simple_repeat 2 46 0 4 1659 3474 145 79 55 chr3 140789703 140790204 -18809579 - RLTR25A LTR ERVK -221 882 357 4 1659 648 207 65 22 chr3 140790535 140790673 -18809110 - B1_Mur1 SINE Alu -5 144 1 4 1659 6517 209 45 18 chr3 140790746 140790761 -18809022 - Lx5 LINE L1 -2 7048 7039 4 1659 207 69 0 0 chr3 140790761 140790790 -18808993 + (TATG)n Simple_repeat Simple_repeat 2 30 0 4 1659 21072 189 40 22 chr3 140790790 140795685 -18804098 - Lx5 LINE L1 -12 7038 2052 4 1659 303 49 0 0 chr3 140795685 140795726 -18804057 + (GA)n Simple_repeat Simple_repeat 2 42 0 4 1659 21072 192 28 17 chr3 140795726 140796709 -18803074 - Lx5 LINE L1 -3826 2051 1058 4 1659 5205 154 7 34 chr3 140797961 140798914 -18800869 + Lx2B LINE L1 4700 5627 -250 4 1659 255 203 94 0 chr3 140798900 140798964 -18800819 + Lx2B LINE L1 5906 5975 -1025 4 1659 1583 146 12 72 chr3 140798964 140799303 -18800480 - RLTRETN_Mm LTR ERVK 0 383 1 4 1659 636 284 23 6 chr3 140799689 140799866 -18799917 + B3A SINE B2 1 180 -18 4 1659 275 308 36 43 chr3 140799980 140800119 -18799664 - MLT1A1 LTR MaLR 0 408 271 4 1659 855 101 93 0 chr3 140800162 140800291 -18799492 + B1_Mus1 SINE Alu 2 142 -6 4 1659 836 108 8 0 chr3 140800292 140800422 -18799361 + (GA)n Simple_repeat Simple_repeat 2 132 0 4 1659 433 362 57 0 chr3 140800452 140800593 -18799190 - RSINE1 SINE B4 -14 151 3 4 1659 2618 46 0 0 chr3 140800617 140800940 -18798843 - L1_Mus1 LINE L1 -541 6026 5704 4 1659 3471 58 16 11 chr3 140800940 140801391 -18798392 + L1_Mus1 LINE L1 6115 6567 0 4 1659 196 53 0 50 chr3 140802084 140802124 -18797659 + (CAAAAA)n Simple_repeat Simple_repeat 4 41 0 4 1659 215 296 0 0 chr3 140802144 140802198 -18797585 + (TATG)n Simple_repeat Simple_repeat 1 54 0 4 1659 27 0 0 0 chr3 140804748 140804775 -18795008 + AT_rich Low_complexity Low_complexity 1 27 0 4 1659 581 317 69 9 chr3 140804992 140805222 -18794561 - MTE2a LTR MaLR 0 379 136 4 1659 1741 198 176 26 chr3 140805222 140805481 -18794302 + RMER2 LTR ERV1 1 295 -272 4 1659 1454 85 83 21 chr3 140805481 140805721 -18794062 + L1_Mus3 LINE L1 6383 6637 -1 4 1659 1741 198 176 26 chr3 140805721 140805954 -18793829 + RMER2 LTR ERV1 296 567 0 4 1659 533 236 9 0 chr3 140805982 140806092 -18793691 - MTE2a LTR MaLR -265 114 4 4 1659 7370 64 2 2 chr3 140806298 140807232 -18792551 - L1_Mus1 LINE L1 -1 6566 5633 4 1659 1063 105 35 6 chr3 140807288 140807461 -18792322 - L1_Mus4 LINE L1 -5 6631 6454 4 1659 558 316 63 17 chr3 140807578 140807752 -18792031 - B4 SINE B4 -23 269 88 4 1659 1027 8 24 0 chr3 140808289 140808416 -18791367 + (TTTTC)n Simple_repeat Simple_repeat 3 132 0 4 1659 501 275 76 8 chr3 140809105 140809237 -18790546 - ID_B1 SINE B4 -8 216 76 4 1659 25 0 0 0 chr3 140809635 140809660 -18790123 + AT_rich Low_complexity Low_complexity 1 25 0 4 1659 21 36 0 0 chr3 140810611 140810639 -18789144 + AT_rich Low_complexity Low_complexity 1 28 0 4 1659 2363 68 15 21 chr3 140810757 140811086 -18788697 + IAPLTR2b LTR ERVK 1 327 0 4 1659 54302 28 13 12 chr3 140811087 140817555 -18782228 + IAPEz-int LTR ERVK 9 6479 -2 4 1659 2374 65 15 21 chr3 140817557 140817886 -18781897 + IAPLTR2b LTR ERVK 1 327 0 4 1659 895 125 15 0 chr3 140817886 140818022 -18781761 + B1_Mus1 SINE Alu 11 148 0 4 1659 249 128 0 0 chr3 140818022 140818069 -18781714 + (A)n Simple_repeat Simple_repeat 1 47 0 4 1659 980 220 25 46 chr3 140818560 140818841 -18780942 + Lx9 LINE L1 7226 7500 -144 4 1659 225 0 0 0 chr3 140818853 140818878 -18780905 + (TA)n Simple_repeat Simple_repeat 1 25 0 4 1659 208 158 35 0 chr3 140819454 140819511 -18780272 + CT-rich Low_complexity Low_complexity 2 60 0 4 1659 450 0 0 0 chr3 140819511 140819561 -18780222 + (CA)n Simple_repeat Simple_repeat 1 50 0 4 1659 263 71 24 0 chr3 140820188 140820230 -18779553 + (TAGA)n Simple_repeat Simple_repeat 4 46 0 4 1659 686 146 17 28 chr3 140820249 140820425 -18779358 + (TAGA)n Simple_repeat Simple_repeat 4 177 0 4 1659 307 176 22 0 chr3 140820429 140820520 -18779263 + (CATA)n Simple_repeat Simple_repeat 1 93 0 4 1659 550 357 45 83 chr3 140821012 140821120 -18778663 - B4A SINE B4 0 292 196 4 1659 755 164 106 148 chr3 140821120 140821251 -18778532 - URR1A DNA MER1_type 0 226 94 4 1659 1111 102 0 0 chr3 140821251 140821398 -18778385 + B1_Mus1 SINE Alu 2 148 0 4 1659 755 164 106 148 chr3 140821398 140821502 -18778281 - URR1A DNA MER1_type -133 93 1 4 1659 550 357 45 83 chr3 140821502 140821683 -18778100 - B4A SINE B4 -97 195 14 4 1659 21 0 0 0 chr3 140821777 140821798 -18777985 + AT_rich Low_complexity Low_complexity 1 21 0 4 1659 486 322 91 47 chr3 140822109 140822451 -18777332 - Lx8 LINE L1 -1 7472 7116 4 1659 180 0 0 0 chr3 140822488 140822508 -18777275 + (TTG)n Simple_repeat Simple_repeat 2 21 0 4 1659 4460 120 15 18 chr3 140823069 140823755 -18776028 - Lx LINE L1 -1 6653 5970 4 1659 4565 157 16 1 chr3 140825555 140826341 -18773442 - Lx LINE L1 -354 5529 4732 4 1659 6972 122 15 5 chr3 140826342 140827467 -18772316 + Lx LINE L1 5508 6644 -10 4 1659 656 12 0 12 chr3 140827467 140827549 -18772234 + (GAA)n Simple_repeat Simple_repeat 2 82 0 4 1659 1347 233 121 8 chr3 140828182 140828537 -18771246 + MTD LTR MaLR 4 398 -21 4 1659 2491 129 3 5 chr3 140828599 140828981 -18770802 - Lx3B LINE L1 -992 5981 5601 4 1659 251 111 0 0 chr3 140829013 140829049 -18770734 - U2 snRNA snRNA -152 36 1 4 1659 198 91 0 0 chr3 140829064 140829097 -18770686 + (A)n Simple_repeat Simple_repeat 1 33 0 4 1659 21 71 0 0 chr3 140829256 140829298 -18770485 + AT_rich Low_complexity Low_complexity 1 42 0 4 1659 741 268 107 15 chr3 140829371 140829708 -18770075 - ORR1D1 LTR MaLR -4 370 3 4 1659 424 161 47 39 chr3 140829962 140830091 -18769692 - Lx7 LINE L1 -1 7695 7566 4 1659 946 76 0 0 chr3 140830091 140830210 -18769573 + B1_Mm SINE Alu 19 137 -10 4 1659 2153 234 106 55 chr3 140830225 140830953 -18768830 - Lx7 LINE L1 -122 7574 6810 4 1659 2554 41 0 0 chr3 140831779 140832093 -18767690 - L1Md_F3 LINE L1 -14 6570 6257 4 1659 889 144 6 6 chr3 140832870 140833045 -18766738 + GA-rich Low_complexity Low_complexity 4 178 0 4 1659 225 0 0 0 chr3 140833332 140833357 -18766426 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 4 1659 847 300 48 22 chr3 140833442 140833711 -18766072 + B4 SINE B4 3 278 -14 4 1659 471 35 0 0 chr3 140833799 140833856 -18765927 + (CA)n Simple_repeat Simple_repeat 2 58 0 4 1659 35 83 0 0 chr3 140834029 140834113 -18765670 + AT_rich Low_complexity Low_complexity 1 84 0 4 1659 444 331 66 46 chr3 140834572 140834724 -18765059 - RSINE1 SINE B4 0 165 11 4 1659 349 316 103 0 chr3 140834761 140834897 -18764886 + B3A SINE B2 5 154 -44 4 1659 552 30 0 0 chr3 140834907 140834973 -18764810 + (TAGA)n Simple_repeat Simple_repeat 3 68 0 4 1659 25 75 0 0 chr3 140835070 140835123 -18764660 + AT_rich Low_complexity Low_complexity 1 53 0 5 1659 521 297 150 55 chr3 140835398 140835797 -18763986 + L1MEc LINE L1 858 1272 -5128 5 1659 1038 80 7 0 chr3 140835797 140835935 -18763848 + B1_Mus1 SINE Alu 1 139 -9 5 1659 327 78 0 0 chr3 140835935 140835986 -18763797 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 5 1659 521 304 200 24 chr3 140835986 140836446 -18763337 + L1MEc LINE L1 1273 1867 -4548 5 1659 216 123 77 26 chr3 140837622 140837739 -18762044 + (TA)n Simple_repeat Simple_repeat 1 123 0 5 1659 542 71 12 0 chr3 140837887 140837971 -18761812 + (TAGA)n Simple_repeat Simple_repeat 1 85 0 5 1659 23 33 0 0 chr3 140838344 140838374 -18761409 + AT_rich Low_complexity Low_complexity 1 30 0 5 1659 255 125 0 0 chr3 140838671 140838711 -18761072 + (CCCTAA)n Simple_repeat Simple_repeat 1 40 0 5 1659 327 408 52 12 chr3 140839159 140839407 -18760376 + L1MDb LINE L1 249 506 -5903 5 1659 3025 181 18 17 chr3 140839704 140840305 -18759478 - Lx2B LINE L1 -1 6999 6398 5 1659 1181 65 18 0 chr3 140841094 140841263 -18758520 - L1_Mus1 LINE L1 0 6567 6396 5 1659 637 132 8 8 chr3 140841436 140841545 -18758238 - Lx LINE L1 -8 6646 6538 5 1659 186 43 0 0 chr3 140841545 140841568 -18758215 + (CCCA)n Simple_repeat Simple_repeat 3 25 0 5 1659 637 132 8 8 chr3 140841568 140841580 -18758203 - Lx LINE L1 -117 6537 6526 5 1659 590 275 28 42 chr3 140841807 140842023 -18757760 - B3 SINE B2 0 216 4 5 1659 774 153 20 133 chr3 140842890 140843086 -18756697 - Lx4A LINE L1 -2 7056 6883 5 1659 21 36 0 0 chr3 140843443 140843471 -18756312 + AT_rich Low_complexity Low_complexity 1 28 0 5 1659 1941 100 10 3 chr3 140844334 140844625 -18755158 - L1_Mus3 LINE L1 0 6638 6346 5 1659 7825 127 68 1 chr3 140845576 140846460 -18753323 - Lx3C LINE L1 -5 6971 6031 5 1659 543 56 0 0 chr3 140846460 140846531 -18753252 + (TCCC)n Simple_repeat Simple_repeat 3 73 0 5 1659 7825 133 114 2 chr3 140846531 140847198 -18752585 - Lx3C LINE L1 -946 6030 5298 5 1659 297 0 0 0 chr3 140847198 140847231 -18752552 + (TTTA)n Simple_repeat Simple_repeat 3 35 0 5 1659 2943 141 177 3 chr3 140847231 140847287 -18752496 - Lx3C LINE L1 -589 5297 5204 5 1659 3807 143 2 2 chr3 140847285 140847923 -18751860 - Lx3C LINE L1 -1206 4680 4043 5 1659 796 243 0 0 chr3 140848871 140849015 -18750768 - B1_Mur1 SINE Alu -5 144 1 5 1659 2319 224 80 9 chr3 140849059 140849636 -18750147 + Lx9 LINE L1 6778 7395 -249 5 1659 26 64 0 0 chr3 140849651 140849698 -18750085 + AT_rich Low_complexity Low_complexity 1 47 0 5 1659 207 88 0 0 chr3 140849881 140849915 -18749868 + (A)n Simple_repeat Simple_repeat 1 34 0 5 1659 267 31 0 0 chr3 140850042 140850074 -18749709 + (A)n Simple_repeat Simple_repeat 1 32 0 5 1659 438 20 0 0 chr3 140850360 140850411 -18749372 + (CAAAA)n Simple_repeat Simple_repeat 2 52 0 5 1659 411 322 26 53 chr3 140850884 140851074 -18748709 + B3A SINE B2 3 187 -11 5 1659 316 312 90 55 chr3 140851179 140851379 -18748404 + L1MB7 LINE L1 1004 1210 -5332 5 1659 437 292 9 9 chr3 140851778 140851892 -18747891 + B4A SINE B4 163 276 -16 5 1659 418 275 72 20 chr3 140851911 140852138 -18747645 + L1MB7 LINE L1 5594 5830 -814 5 1659 242 347 115 8 chr3 140852239 140852483 -18747300 + L1MB7 LINE L1 5956 6225 -457 5 1659 246 327 135 21 chr3 140852600 140852934 -18746849 + L1MB7 LINE L1 6311 6682 0 5 1659 1062 261 107 15 chr3 140853746 140854326 -18745457 - Lx9 LINE L1 -1670 5974 5316 5 1659 488 339 43 22 chr3 140854403 140854587 -18745196 + B4A SINE B4 103 290 -2 5 1659 485 275 188 47 chr3 140854648 140854904 -18744879 - MER57C2 LTR ERV1 -18 416 125 5 1659 207 271 56 56 chr3 140855469 140855559 -18744224 - MIR3 SINE MIR -2 206 117 5 1659 22 56 0 0 chr3 140857291 140857327 -18742456 + AT_rich Low_complexity Low_complexity 1 36 0 5 1659 21 0 0 0 chr3 140857458 140857479 -18742304 + AT_rich Low_complexity Low_complexity 1 21 0 5 1659 740 286 139 14 chr3 140857564 140858054 -18741729 - L1MC3 LINE L1 -24 7761 7211 5 1659 23 33 0 0 chr3 140859841 140859871 -18739912 + AT_rich Low_complexity Low_complexity 1 30 0 5 1659 1070 187 28 28 chr3 140862037 140862252 -18737531 - MTC LTR MaLR -8 413 199 5 1659 1571 97 17 0 chr3 140862253 140862490 -18737293 - Lx LINE L1 0 6654 6414 5 1659 402 21 0 0 chr3 140862501 140862548 -18737235 + (TTTTC)n Simple_repeat Simple_repeat 4 50 0 5 1659 1050 60 0 26 chr3 140862694 140862848 -18736935 - L1Md_F3 LINE L1 -3 6581 6432 5 1659 816 222 75 11 chr3 140862848 140863035 -18736748 - MTC LTR MaLR -222 199 1 5 1659 4764 185 107 28 chr3 140863035 140864201 -18735582 - MTC-int LTR MaLR 0 1258 1 5 1659 1160 208 30 21 chr3 140864201 140864437 -18735346 - MTC LTR MaLR -2 419 182 5 1659 243 65 0 0 chr3 140864446 140864477 -18735306 - MTC LTR MaLR -388 31 1 5 1659 1352 279 31 20 chr3 140866285 140866677 -18733106 - Lx7 LINE L1 -435 7261 6866 5 1659 459 400 102 19 chr3 140866940 140867371 -18732412 - MLT1H1 LTR MaLR -85 470 4 5 1659 2278 102 31 0 chr3 140867426 140867749 -18732034 + Lx LINE L1 5785 6117 -537 5 1659 1533 120 16 3 chr3 140867781 140868028 -18731755 + Lx LINE L1 6341 6561 -93 5 1659 291 328 47 47 chr3 140868388 140868580 -18731203 - MER77 LTR ERVL -3 604 413 5 1659 276 266 38 144 chr3 140868609 140868741 -18731042 + ID_B1 SINE B4 102 219 -5 5 1659 533 311 83 26 chr3 140868747 140868948 -18730835 + B3 SINE B2 1 198 0 5 1659 1477 306 72 23 chr3 140869249 140869898 -18729885 + Lx8 LINE L1 6787 7467 -6 5 1659 218 167 17 0 chr3 140869951 140870011 -18729772 + (CA)n Simple_repeat Simple_repeat 2 62 0 5 1659 493 264 0 16 chr3 140870027 140870150 -18729633 + Lx8 LINE L1 7049 7169 -304 5 1659 23 0 0 0 chr3 140870258 140870281 -18729502 + AT_rich Low_complexity Low_complexity 1 23 0 5 1659 4400 118 71 19 chr3 140870813 140871562 -18728221 + Lx2 LINE L1 6208 6995 -2 5 1659 699 110 37 19 chr3 140871713 140871853 -18727930 + B1_Mus2 SINE Alu 20 149 0 5 1659 655 140 25 29 chr3 140872016 140872298 -18727485 + (TA)n Simple_repeat Simple_repeat 1 281 0 5 1659 194 143 20 0 chr3 140872389 140872438 -18727345 + (TA)n Simple_repeat Simple_repeat 2 51 0 5 1659 228 35 0 0 chr3 140872439 140872468 -18727315 + (TAGA)n Simple_repeat Simple_repeat 1 29 0 5 1659 355 136 121 0 chr3 140872576 140872642 -18727141 + MTE2a LTR MaLR 17 90 -289 5 1659 562 164 34 17 chr3 140872680 140872798 -18726985 - Lx3A LINE L1 -755 6226 6107 5 1659 1798 124 38 25 chr3 140872794 140873108 -18726675 + Lx3B LINE L1 5803 6120 -853 5 1659 232 289 42 62 chr3 140874985 140875129 -18724654 + ID_B1 SINE B4 24 164 -60 5 1659 194 192 0 19 chr3 140875173 140875226 -18724557 + GA-rich Low_complexity Low_complexity 2 53 0 5 1659 183 42 0 0 chr3 140875825 140875849 -18723934 + (TTTG)n Simple_repeat Simple_repeat 4 27 0 5 1659 3906 97 9 11 chr3 140875851 140876415 -18723368 + RMER2 LTR ERV1 1 563 -4 5 1659 225 0 0 0 chr3 140876601 140876626 -18723157 + (TG)n Simple_repeat Simple_repeat 2 26 0 5 1659 450 94 0 0 chr3 140877375 140877439 -18722344 + (T)n Simple_repeat Simple_repeat 1 64 0 5 1659 204 40 0 0 chr3 140878488 140878513 -18721270 + (TTC)n Simple_repeat Simple_repeat 3 27 0 5 1659 181 350 74 12 chr3 140880884 140880965 -18718818 - L2b LINE L2 -321 3054 2969 5 1659 268 361 54 12 chr3 140881976 140882144 -18717639 + L2 LINE L2 1824 1998 -1421 5 1659 30 45 0 0 chr3 140883427 140883471 -18716312 + AT_rich Low_complexity Low_complexity 1 44 0 5 1659 222 354 87 35 chr3 140883659 140883890 -18715893 - MIRb SINE MIR -2 266 24 5 1659 311 208 20 30 chr3 140883994 140884093 -18715690 - Lx6 LINE L1 0 7460 7363 5 1659 224 100 25 0 chr3 140884152 140884192 -18715591 + (TG)n Simple_repeat Simple_repeat 2 42 0 5 1659 23 78 0 0 chr3 140884404 140884455 -18715328 + AT_rich Low_complexity Low_complexity 1 51 0 5 1659 216 0 0 0 chr3 140884495 140884519 -18715264 + (CA)n Simple_repeat Simple_repeat 2 25 0 5 1659 277 75 38 0 chr3 140885987 140886040 -18713743 + (TTTTG)n Simple_repeat Simple_repeat 2 56 0 5 1659 52 17 0 0 chr3 140886108 140886167 -18713616 + AT_rich Low_complexity Low_complexity 1 59 0 5 1659 1622 183 51 9 chr3 140886305 140886636 -18713147 + RMER6C LTR ERVK 346 690 0 5 1659 180 97 0 0 chr3 140887341 140887372 -18712411 + (CA)n Simple_repeat Simple_repeat 2 32 0 5 1659 370 273 0 11 chr3 140887622 140887711 -18712072 - L1_Rod LINE L1 -1017 4830 4743 5 1659 1153 292 19 113 chr3 140887710 140888524 -18711259 + L1M2 LINE L1 4390 5120 -727 5 1659 232 338 99 80 chr3 140888761 140888912 -18710871 - LTR79 LTR ERVL -353 174 21 5 1659 300 70 0 0 chr3 140889335 140889378 -18710405 + (TG)n Simple_repeat Simple_repeat 2 44 0 5 1659 434 236 176 32 chr3 140890345 140890533 -18709250 - B3 SINE B2 0 216 2 5 1659 1115 280 123 9 chr3 140890593 140890977 -18708806 - MTD LTR MaLR 0 421 1 5 1659 2368 249 39 79 chr3 140891091 140891191 -18708592 + Lx7 LINE L1 6867 6963 -733 5 1659 936 125 0 0 chr3 140891191 140891351 -18708432 + (GGA)n Simple_repeat Simple_repeat 1 160 0 5 1659 2368 249 39 79 chr3 140891351 140891670 -18708113 + Lx7 LINE L1 6964 7251 -445 5 1659 597 285 0 0 chr3 140891670 140891807 -18707976 - B1_Mur1 SINE Alu -11 138 2 5 1659 2368 249 39 79 chr3 140891807 140892250 -18707533 + Lx7 LINE L1 7252 7696 0 5 1659 477 0 0 0 chr3 140892943 140892996 -18706787 + (TG)n Simple_repeat Simple_repeat 2 54 0 5 1659 429 20 0 0 chr3 140893989 140894039 -18705744 + (CA)n Simple_repeat Simple_repeat 1 50 0 5 1659 292 306 0 0 chr3 140894102 140894174 -18705609 - ID4_ SINE ID -9 74 3 5 1659 25 0 0 0 chr3 140894249 140894274 -18705509 + AT_rich Low_complexity Low_complexity 1 25 0 5 1659 21 57 0 0 chr3 140894523 140894558 -18705225 + AT_rich Low_complexity Low_complexity 1 35 0 5 1659 8090 48 3 0 chr3 140894679 140895669 -18704114 - L1Md_F2 LINE L1 -3 6579 5587 5 1659 15245 43 47 3 chr3 140895726 140898408 -18701375 - L1Md_A LINE L1 -1 6581 3768 5 1659 4550 119 16 3 chr3 140898407 140899115 -18700668 - L1Md_A LINE L1 -5588 1136 420 5 1659 570 182 19 0 chr3 140900331 140900485 -18699298 + (TA)n Simple_repeat Simple_repeat 2 158 0 5 1659 372 172 0 0 chr3 140900791 140900878 -18698905 + CT-rich Low_complexity Low_complexity 1 87 0 5 1659 310 322 123 8 chr3 140901634 140901756 -18698027 - B1_Mur1 SINE Alu -9 140 5 5 1660 348 324 88 21 chr3 140904074 140904266 -18695517 - MLT1I LTR MaLR -38 373 169 5 1660 207 221 33 65 chr3 140904344 140904436 -18695347 + L2 LINE L2 2010 2098 -1321 5 1660 260 385 44 22 chr3 140904575 140904758 -18695025 + L2 LINE L2 2330 2516 -903 5 1660 190 272 71 61 chr3 140904872 140904970 -18694813 + L2 LINE L2 2626 2724 -695 5 1660 1201 199 87 31 chr3 140905023 140905345 -18694438 - RLTR15 LTR ERVK -19 340 1 6 1660 560 40 13 0 chr3 140905600 140905675 -18694108 + (TC)n Simple_repeat Simple_repeat 1 76 0 6 1660 390 91 0 0 chr3 140905675 140905729 -18694054 + (CA)n Simple_repeat Simple_repeat 1 55 0 6 1660 23 68 0 0 chr3 140908566 140908610 -18691173 + AT_rich Low_complexity Low_complexity 1 44 0 6 1660 26 64 0 0 chr3 140908658 140908705 -18691078 + AT_rich Low_complexity Low_complexity 1 47 0 6 1660 23 92 0 0 chr3 140908804 140908869 -18690914 + AT_rich Low_complexity Low_complexity 1 65 0 6 1660 1158 78 0 0 chr3 140909459 140909639 -18690144 + (GA)n Simple_repeat Simple_repeat 1 180 0 6 1660 666 333 54 16 chr3 140910450 140910764 -18689019 - Lx8 LINE L1 -28 7445 7120 6 1660 1004 322 39 24 chr3 140911395 140911860 -18687923 - L1MA5 LINE L1 -42 6258 5787 6 1660 5176 190 55 58 chr3 140911887 140913137 -18686646 + MTC-int LTR MaLR 11 1257 -1 6 1660 1873 191 99 3 chr3 140913137 140913521 -18686262 + MTC LTR MaLR 1 421 0 6 1660 723 324 91 14 chr3 140913525 140914145 -18685638 - L1MA5 LINE L1 -838 5453 4786 6 1660 500 389 77 43 chr3 140915291 140915705 -18684078 - MLT1G3 LTR MaLR -166 429 2 6 1660 999 213 19 28 chr3 140915946 140916159 -18683624 + URR1B DNA MER1_type 15 225 0 6 1660 4590 93 6 2 chr3 140916428 140917060 -18682723 + L1_Mus1 LINE L1 5933 6567 0 6 1660 269 232 11 0 chr3 140917098 140917193 -18682590 + (CATA)n Simple_repeat Simple_repeat 1 96 0 6 1660 12546 29 0 0 chr3 140917336 140919505 -18680278 - L1Md_T LINE L1 -2 6580 4411 6 1660 473 266 152 42 chr3 140919546 140919876 -18679907 + RMER10A LTR ERVL 77 442 0 6 1660 621 100 0 0 chr3 140920909 140920999 -18678784 + (TCC)n Simple_repeat Simple_repeat 2 91 0 6 1660 188 367 17 0 chr3 140921277 140921337 -18678446 + MIRm SINE MIR 31 91 -185 6 1660 277 175 36 21 chr3 140922083 140922223 -18677560 + (TA)n Simple_repeat Simple_repeat 1 142 0 6 1660 345 241 12 24 chr3 140922252 140922418 -18677365 + (TA)n Simple_repeat Simple_repeat 1 164 0 6 1660 279 0 0 0 chr3 140922735 140922766 -18677017 + (CA)n Simple_repeat Simple_repeat 2 32 0 6 1660 378 35 0 0 chr3 140923503 140923561 -18676222 + L1_Mus4 LINE L1 6576 6633 -3 6 1660 683 278 94 0 chr3 140923572 140923763 -18676020 + B3 SINE B2 1 209 -7 6 1660 189 107 0 0 chr3 140924776 140924804 -18674979 + (A)n Simple_repeat Simple_repeat 1 28 0 6 1660 3526 161 8 22 chr3 140924807 140925442 -18674341 - Lx2B LINE L1 -404 6596 5971 6 1660 2063 179 13 10 chr3 140925442 140925838 -18673945 + Lx2B LINE L1 6592 6988 -12 6 1660 276 154 0 0 chr3 140926067 140926119 -18673664 + GA-rich Low_complexity Low_complexity 1 52 0 6 1660 21 57 0 0 chr3 140927513 140927548 -18672235 + AT_rich Low_complexity Low_complexity 1 35 0 6 1660 424 361 0 0 chr3 140928418 140928576 -18671207 + Lx8 LINE L1 6826 6983 -490 6 1660 30 45 0 0 chr3 140928979 140929023 -18670760 + AT_rich Low_complexity Low_complexity 1 44 0 6 1660 249 33 0 0 chr3 140929759 140929789 -18669994 + (T)n Simple_repeat Simple_repeat 1 30 0 6 1660 1173 55 0 7 chr3 140929789 140929937 -18669846 - B1_Mm SINE Alu 0 147 1 6 1660 299 349 39 53 chr3 140929939 140929977 -18669806 - MTE-int LTR MaLR -150 1430 1396 6 1660 911 182 26 0 chr3 140929977 140930169 -18669614 + Lx5 LINE L1 6842 7038 -12 6 1660 804 40 0 0 chr3 140930172 140930272 -18669511 + (GGAA)n Simple_repeat Simple_repeat 4 103 0 6 1660 299 349 39 53 chr3 140930272 140930435 -18669348 - MTE-int LTR MaLR -185 1395 1228 6 1660 587 329 49 30 chr3 140930549 140930815 -18668968 - MTE2a LTR MaLR 0 379 109 6 1660 2974 102 11 11 chr3 140930829 140931276 -18668507 - Lx3A LINE L1 -2 6979 6533 6 1660 3642 12 0 0 chr3 140931275 140931688 -18668095 - L1Md_A LINE L1 0 6582 6170 6 1660 465 0 0 0 chr3 140931688 140931739 -18668044 + L1Md_A LINE L1 6130 6180 -402 6 1660 312 77 0 0 chr3 140931736 140931775 -18668008 - Lx3_Mus LINE L1 -443 6566 6528 6 1660 24636 62 1 3 chr3 140932431 140936317 -18663466 - L1Md_F2 LINE L1 -12 6570 2690 6 1660 386 317 106 74 chr3 140936397 140936680 -18663103 + B4A SINE B4 1 292 0 6 1660 677 258 70 5 chr3 140936798 140936997 -18662786 - B3 SINE B2 -4 212 1 6 1660 1052 162 4 139 chr3 140937458 140937677 -18662106 - URR1B DNA MER1_type -1 224 33 6 1660 1046 100 0 3 chr3 140937677 140937858 -18661925 + (CA)n Simple_repeat Simple_repeat 1 182 -103 6 1660 1046 100 0 3 chr3 140937864 140937964 -18661819 + (CA)n Simple_repeat Simple_repeat 183 285 0 6 1660 1052 162 4 139 chr3 140937964 140937995 -18661788 - URR1B DNA MER1_type -193 32 2 6 1660 27 81 0 0 chr3 140938137 140938199 -18661584 + AT_rich Low_complexity Low_complexity 1 62 0 6 1660 3038 68 2 8 chr3 140939020 140939418 -18660365 + MTA_Mm LTR MaLR 1 396 0 6 1660 971 92 28 0 chr3 140939752 140939893 -18659890 - B1_Mus2 SINE Alu 0 147 3 6 1660 3791 144 15 5 chr3 140939894 140940503 -18659280 - Lx LINE L1 -8 6646 6032 6 1660 3852 26 0 2 chr3 140940736 140941194 -18658589 - L1Md_F2 LINE L1 0 6582 6126 6 1660 3341 35 2 0 chr3 140941194 140941593 -18658190 + L1Md_F2 LINE L1 5723 6122 -460 6 1660 232 360 39 26 chr3 140941616 140941770 -18658013 - MER5A DNA MER1_type -22 167 12 6 1660 235 302 16 16 chr3 140941978 140942042 -18657741 + AmnSINE1 SINE SINE 433 496 -79 6 1660 265 168 10 19 chr3 140942220 140942323 -18657460 + T-rich Low_complexity Low_complexity 1 102 0 6 1660 399 300 241 24 chr3 140942560 140942772 -18657011 - MamRep605 Unknown Unknown -221 655 398 6 1660 498 297 120 70 chr3 140943556 140944113 -18655670 - L1MC3 LINE L1 -362 7423 6839 6 1660 2275 110 31 0 chr3 140945167 140945494 -18654289 + Lx2 LINE L1 6307 6643 -354 6 1660 1187 152 23 14 chr3 140945494 140945708 -18654075 + Lx2 LINE L1 6775 6990 -7 6 1660 650 328 57 34 chr3 140945829 140946126 -18653657 - MER21B LTR ERV1 -130 733 430 6 1660 22 35 0 0 chr3 140947295 140947324 -18652459 + AT_rich Low_complexity Low_complexity 1 29 0 6 1660 703 217 83 108 chr3 140947418 140947702 -18652081 - MT2A LTR ERVL -69 406 2 6 1660 996 320 91 57 chr3 140950005 140950466 -18649317 - Lx8 LINE L1 -1577 5896 5417 6 1660 775 195 0 39 chr3 140950466 140950621 -18649162 - B1_Mur4 SINE Alu 0 150 2 6 1660 1141 282 120 31 chr3 140950621 140951601 -18648182 - Lx8 LINE L1 -431 5416 4375 6 1660 471 333 39 20 chr3 140951770 140952177 -18647606 - Lx8 LINE L1 -3914 1933 1519 6 1660 6415 14 0 0 chr3 140952232 140952958 -18646825 - L1Md_A LINE L1 0 6582 5857 6 1660 22 0 0 0 chr3 140953012 140953034 -18646749 + AT_rich Low_complexity Low_complexity 1 22 0 6 1660 21 36 0 0 chr3 140953119 140953147 -18646636 + AT_rich Low_complexity Low_complexity 1 28 0 6 1660 408 279 36 42 chr3 140953203 140953368 -18646415 - B3 SINE B2 -3 213 50 6 1660 520 186 0 27 chr3 140953396 140953545 -18646238 + CT-rich Low_complexity Low_complexity 3 147 0 6 1660 881 309 51 26 chr3 140953546 140953879 -18645904 + MTD LTR MaLR 25 369 -31 6 1660 198 0 0 0 chr3 140953879 140953901 -18645882 + (TTTTC)n Simple_repeat Simple_repeat 4 25 0 6 1660 653 317 98 82 chr3 140953901 140953935 -18645848 + MTD LTR MaLR 370 400 0 6 1660 204 40 0 0 chr3 140954412 140954437 -18645346 + (TTTTA)n Simple_repeat Simple_repeat 4 28 0 6 1660 1347 77 0 40 chr3 140954445 140954647 -18645136 + B2_Mm2 SINE B2 2 195 0 6 1660 6124 144 61 19 chr3 140954647 140955728 -18644055 + Lx3B LINE L1 5841 6966 -7 6 1660 270 0 0 0 chr3 140955743 140955773 -18644010 + (TAAA)n Simple_repeat Simple_repeat 3 32 0 6 1660 1157 265 43 87 chr3 140956442 140956838 -18642945 + MTE2b LTR MaLR 4 370 0 6 1660 671 167 0 11 chr3 140957235 140957417 -18642366 + CT-rich Low_complexity Low_complexity 1 180 0 6 1660 3082 43 10 36 chr3 140957518 140957932 -18641851 - L1Md_F2 LINE L1 0 6582 6180 6 1660 489 138 0 0 chr3 140958131 140958211 -18641572 + (TA)n Simple_repeat Simple_repeat 2 81 0 6 1660 230 255 0 0 chr3 140958456 140958503 -18641280 + Lx9 LINE L1 7384 7430 -214 6 1660 219 86 0 79 chr3 140958539 140958602 -18641181 + (CAGAGA)n Simple_repeat Simple_repeat 1 58 0 6 1660 360 43 0 0 chr3 140958611 140958657 -18641126 + (CA)n Simple_repeat Simple_repeat 1 46 0 6 1660 1017 111 0 25 chr3 140959246 140959427 -18640356 - L1_Mur3 LINE L1 -3131 2749 2574 6 1660 330 26 0 0 chr3 140959711 140959750 -18640033 + (TAAA)n Simple_repeat Simple_repeat 4 42 0 6 1660 389 366 136 19 chr3 140959856 140960284 -18639499 - L2a LINE L2 -258 3168 2694 6 1660 6359 152 58 5 chr3 140963739 140965670 -18634113 - Lx LINE L1 -11 6643 4635 6 1660 1109 236 162 6 chr3 140965754 140966074 -18633709 + ORR1D2 LTR MaLR 1 370 0 6 1660 3049 158 33 17 chr3 140966145 140966736 -18633047 - RLTR26 LTR ERVK -2 640 1 6 1660 494 262 41 34 chr3 140966979 140967125 -18632658 + B1F SINE Alu 2 148 -1 6 1660 3100 67 47 0 chr3 140967927 140968331 -18631452 - L1_Mus1 LINE L1 0 5883 5461 6 1660 4125 97 6 58 chr3 140968331 140968991 -18630792 + L1_Mus1 LINE L1 5936 6561 -6 6 1660 226 0 59 0 chr3 140969333 140969367 -18630416 + (CAAA)n Simple_repeat Simple_repeat 3 38 0 6 1660 297 0 0 0 chr3 140969863 140969896 -18629887 + (TTAG)n Simple_repeat Simple_repeat 3 35 0 6 1660 1581 141 11 8 chr3 140969954 140970218 -18629565 + L1Md_F2 LINE L1 366 630 -5986 6 1660 18915 65 3 14 chr3 140970226 140972774 -18627009 + L1Md_F2 LINE L1 3069 5586 -297 6 1660 8178 50 2 0 chr3 140972774 140973766 -18626017 + L1Md_F2 LINE L1 5587 6580 -2 6 1660 812 94 0 0 chr3 140975187 140975304 -18624479 + B1_Mus2 SINE Alu 31 147 0 6 1660 23 0 0 0 chr3 140975311 140975334 -18624449 + AT_rich Low_complexity Low_complexity 1 23 0 6 1660 213 93 36 18 chr3 140975927 140975982 -18623801 + (TAAA)n Simple_repeat Simple_repeat 3 58 0 6 1660 2576 66 0 0 chr3 140978025 140978343 -18621440 + L1_Mus1 LINE L1 6250 6567 0 6 1660 230 364 0 0 chr3 140978585 140978651 -18621132 + MLT2B2 LTR ERVL 416 481 -81 6 1660 228 35 0 0 chr3 140978676 140978705 -18621078 + (CA)n Simple_repeat Simple_repeat 2 30 0 6 1660 360 0 0 0 chr3 140978705 140978744 -18621039 + (GA)n Simple_repeat Simple_repeat 2 41 0 6 1660 460 301 92 71 chr3 140978792 140979117 -18620666 + ERVL-B4-int LTR ERVL 1383 1714 -4000 6 1660 1743 71 4 0 chr3 140979124 140979350 -18620433 - L1_Mus1 LINE L1 -240 6327 6101 6 1660 1956 78 0 0 chr3 140979350 140979606 -18620177 + L1_Mus1 LINE L1 6312 6567 0 6 1660 309 369 0 66 chr3 140979807 140979929 -18619854 + PB1D10 SINE Alu 4 117 0 6 1660 414 315 69 41 chr3 140979931 140979969 -18619814 + ERVL-B4-int LTR ERVL 1923 1960 -3754 6 1660 270 56 0 0 chr3 140979969 140980005 -18619778 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 6 1660 414 315 69 41 chr3 140980005 140980211 -18619572 + ERVL-B4-int LTR ERVL 1961 2173 -3541 6 1660 332 289 54 8 chr3 140980301 140980430 -18619353 + Lx9 LINE L1 7280 7414 -230 6 1660 531 138 0 0 chr3 140980439 140980526 -18619257 + (CAGA)n Simple_repeat Simple_repeat 2 88 0 6 1660 548 220 50 18 chr3 140980567 140980785 -18618998 + Lx9 LINE L1 7419 7643 -1 6 1660 277 325 102 6 chr3 140980885 140981052 -18618731 + ERVL-int LTR ERVL 4319 4501 -1256 7 1660 478 196 11 0 chr3 140981311 140981403 -18618380 - Lx9 LINE L1 -222 7422 7330 7 1660 1101 291 50 16 chr3 140981408 140981764 -18618019 - MTE2b LTR MaLR -50 369 1 7 1660 2328 325 80 29 chr3 140981772 140982351 -18617432 - MTE-int LTR MaLR -9 1571 946 7 1660 441 0 0 0 chr3 140982351 140982400 -18617383 + (CA)n Simple_repeat Simple_repeat 1 49 0 7 1660 2328 325 80 29 chr3 140982400 140982795 -18616988 - MTE-int LTR MaLR -635 945 547 7 1660 29 0 0 0 chr3 140984120 140984149 -18615634 + AT_rich Low_complexity Low_complexity 1 29 0 7 1660 235 246 14 14 chr3 140984764 140984834 -18614949 + GA-rich Low_complexity Low_complexity 2 71 0 7 1660 594 0 0 0 chr3 140985066 140985132 -18614651 + (GA)n Simple_repeat Simple_repeat 1 66 0 7 1660 783 151 50 55 chr3 140985143 140985325 -18614458 + Lx4B LINE L1 6873 7053 -5 7 1660 23 33 0 0 chr3 140985328 140985358 -18614425 + AT_rich Low_complexity Low_complexity 1 30 0 7 1660 280 217 11 11 chr3 140986096 140986189 -18613594 + GA-rich Low_complexity Low_complexity 3 95 0 7 1660 27 0 0 0 chr3 140987138 140987165 -18612618 + AT_rich Low_complexity Low_complexity 1 27 0 7 1660 297 364 56 69 chr3 140987562 140987795 -18611988 + Lx8 LINE L1 7043 7272 -201 7 1660 396 0 0 0 chr3 140987835 140987879 -18611904 + (CA)n Simple_repeat Simple_repeat 1 44 0 7 1660 448 311 113 58 chr3 140988047 140988714 -18611069 + L1M4 LINE L1 4392 5111 -1035 7 1660 3857 57 0 0 chr3 140988714 140989187 -18610596 + L1_Mus2 LINE L1 6094 6566 0 7 1660 448 311 113 58 chr3 140989187 140989246 -18610537 + L1M4 LINE L1 5112 5162 -984 7 1660 808 207 44 16 chr3 140989246 140989428 -18610355 + B2_Mm2 SINE B2 1 187 -8 7 1660 448 311 113 58 chr3 140989428 140989646 -18610137 + L1M4 LINE L1 5163 5389 -757 7 1660 2142 235 42 8 chr3 140989651 140990179 -18609604 + L1_Mur3 LINE L1 558 1103 -6625 7 1660 4934 182 52 22 chr3 140990243 140991405 -18608378 + L1_Mur3 LINE L1 1095 2300 -3580 7 1660 1115 71 0 7 chr3 140991405 140991547 -18608236 + B1_Mus2 SINE Alu 1 141 -6 7 1660 243 0 0 0 chr3 140991551 140991578 -18608205 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 7 1660 4934 180 55 23 chr3 140991578 140991712 -18608071 + L1_Mur3 LINE L1 2301 2434 -3446 7 1660 3677 244 32 27 chr3 140991700 140992074 -18607709 - Lx6 LINE L1 -37 7423 7047 7 1660 3342 70 11 24 chr3 140992074 140992540 -18607243 - L1Md_F2 LINE L1 0 6582 6123 7 1660 3677 244 32 27 chr3 140992540 140993050 -18606733 - Lx6 LINE L1 -414 7046 6536 7 1660 399 330 10 31 chr3 140993074 140993268 -18606515 - Lx6 LINE L1 -48 7412 7223 7 1660 2482 181 18 4 chr3 140993271 140993765 -18606018 - L1_Mur3 LINE L1 -1641 4239 3739 7 1660 2028 251 34 6 chr3 140993768 140994265 -18605518 + Lx7 LINE L1 6386 6896 -800 7 1660 1303 265 58 17 chr3 140994675 140995090 -18604693 - RCHARR1 DNA MER1_type -155 819 388 7 1660 264 370 22 0 chr3 140995125 140995217 -18604566 + B1F SINE Alu 1 94 -55 7 1660 236 220 40 0 chr3 140995265 140995315 -18604468 + (CAGA)n Simple_repeat Simple_repeat 1 52 0 7 1660 322 367 48 10 chr3 140995362 140995571 -18604212 - LTR40a LTR ERVL -299 220 4 7 1660 21 57 0 0 chr3 140996179 140996214 -18603569 + AT_rich Low_complexity Low_complexity 1 35 0 7 1660 295 222 35 47 chr3 140996663 140996748 -18603035 - B1F1 SINE Alu -63 86 3 7 1660 481 237 61 47 chr3 140997614 140997923 -18601860 + L1M3 LINE L1 5112 5426 -874 7 1660 932 109 14 0 chr3 140998105 140998252 -18601531 + (TTTC)n Simple_repeat Simple_repeat 2 150 0 7 1660 7070 181 34 22 chr3 140998252 140999598 -18600185 - Lx4B LINE L1 -11 7047 5685 7 1660 1278 279 167 5 chr3 141000001 141000472 -18599311 + L1MA9 LINE L1 5543 6104 -208 1 1660 180 111 0 0 chr3 141000472 141000499 -18599284 + (CAA)n Simple_repeat Simple_repeat 2 28 0 2 1660 1278 279 167 5 chr3 141000499 141000651 -18599132 + L1MA9 LINE L1 6105 6267 -45 1 1660 232 288 125 0 chr3 141000906 141000986 -18598797 - B1F1 SINE Alu -51 98 9 3 1660 885 237 26 11 chr3 141003274 141003495 -18596288 - L1_Mur3 LINE L1 -594 5286 5060 4 1660 2779 94 5 15 chr3 141003495 141003906 -18595877 + L1Md_F2 LINE L1 6164 6570 -12 5 1660 885 237 26 11 chr3 141003906 141003953 -18595830 - L1_Mur3 LINE L1 -821 5059 5015 4 1660 601 207 0 0 chr3 141003953 141004074 -18595709 - L1_Mur3 LINE L1 -1736 4144 4024 4 1660 877 265 15 10 chr3 141004076 141004282 -18595501 + MTC LTR MaLR 3 209 -212 6 1660 1003 135 0 0 chr3 141004282 141004430 -18595353 + B1_Mus1 SINE Alu 1 148 0 7 1660 504 179 0 0 chr3 141004430 141004547 -18595236 + A-rich Low_complexity Low_complexity 1 117 0 8 1660 1125 83 0 0 chr3 141004577 141004757 -18595026 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 9 1660 999 247 13 30 chr3 141004757 141004978 -18594805 + MTC LTR MaLR 204 421 0 6 1660 2280 169 88 9 chr3 141004981 141005518 -18594265 - L1_Mur3 LINE L1 -1855 4025 3447 4 1660 831 92 8 0 chr3 141005654 141005774 -18594009 + B1_Mus1 SINE Alu 28 148 0 1 1660 419 391 69 30 chr3 141005982 141006285 -18593498 + MLT1A0 LTR MaLR 49 363 -2 1 1660 393 232 13 6 chr3 141006675 141006761 -18593022 - RSINE1 SINE B4 -81 84 1 1 1660 29 60 0 0 chr3 141007569 141007619 -18592164 + AT_rich Low_complexity Low_complexity 1 50 0 1 1660 25 51 0 0 chr3 141007704 141007743 -18592040 + AT_rich Low_complexity Low_complexity 1 39 0 1 1660 267 175 0 0 chr3 141007830 141007887 -18591896 + (CA)n Simple_repeat Simple_repeat 2 58 0 1 1660 4025 86 0 25 chr3 141008010 141008581 -18591202 + L1Md_F2 LINE L1 5030 5586 -297 1 1660 6668 80 52 5 chr3 141008581 141009517 -18590266 + L1Md_F2 LINE L1 5587 6566 -16 1 1660 206 32 32 0 chr3 141009521 141009552 -18590231 + (TAAAA)n Simple_repeat Simple_repeat 3 34 0 1 1660 4574 89 50 0 chr3 141009595 141010805 -18588978 + L1Md_F LINE L1 578 1851 -4032 1 1660 6026 80 11 5 chr3 141010804 141011184 -18588599 + L1_Mm LINE L1 1582 1961 -3922 1 1660 234 62 0 0 chr3 141011184 141011216 -18588567 + (CAAAA)n Simple_repeat Simple_repeat 4 35 0 2 1660 6026 80 11 5 chr3 141011216 141011694 -18588089 + L1_Mm LINE L1 1962 2443 -3440 1 1660 1103 53 0 0 chr3 141011684 141011816 -18587967 + L1Md_F2 LINE L1 5455 5586 -297 2 1660 7025 90 5 9 chr3 141011817 141012793 -18586990 + L1Md_F2 LINE L1 5588 6559 -23 2 1660 189 0 0 0 chr3 141012793 141012814 -18586969 + (TAA)n Simple_repeat Simple_repeat 1 21 0 2 1660 583 260 107 20 chr3 141012842 141013038 -18586745 + B3 SINE B2 3 215 -1 2 1660 26 50 0 0 chr3 141014048 141014088 -18585695 + AT_rich Low_complexity Low_complexity 1 40 0 2 1660 32 57 0 0 chr3 141014363 141014416 -18585367 + AT_rich Low_complexity Low_complexity 1 53 0 2 1660 2686 169 6 12 chr3 141015172 141015668 -18584115 - L1_Mur2 LINE L1 -1039 4838 4346 2 1660 6192 149 47 1 chr3 141015662 141017222 -18582561 + Lx2 LINE L1 5012 6643 -354 2 1660 1315 158 5 0 chr3 141017222 141017444 -18582339 + Lx2 LINE L1 6775 6997 0 2 1660 361 320 119 8 chr3 141018322 141018691 -18581092 + L1MDb LINE L1 924 1333 -5207 2 1660 25 31 0 0 chr3 141018693 141018725 -18581058 + AT_rich Low_complexity Low_complexity 1 32 0 2 1660 351 241 120 0 chr3 141018827 141018960 -18580823 + L1MDb LINE L1 1575 1723 -4910 2 1660 410 264 68 25 chr3 141019237 141019400 -18580383 + Charlie5 DNA MER1_type 2455 2624 0 3 1660 1865 47 21 0 chr3 141019418 141019652 -18580131 - L1_Mus1 LINE L1 0 6567 6329 3 1660 1942 77 0 0 chr3 141019653 141019900 -18579883 + L1_Mm LINE L1 5416 5662 -221 3 1660 1177 240 166 25 chr3 141021225 141021593 -18578190 - Lx6 LINE L1 -9 7451 7032 3 1660 395 347 45 69 chr3 141021624 141022021 -18577762 + LTR78 LTR ERV1 865 1285 -19 3 1660 263 72 0 23 chr3 141023264 141023307 -18576476 + (TTTTG)n Simple_repeat Simple_repeat 2 43 0 3 1660 715 174 14 55 chr3 141023314 141023460 -18576323 - B1_Mur3 SINE Alu -9 140 1 3 1660 300 304 27 100 chr3 141023832 141023982 -18575801 - MLT1E2 LTR MaLR -486 141 3 3 1660 300 273 101 24 chr3 141024800 141024969 -18574814 + L1MA8 LINE L1 5788 5969 -322 3 1660 518 210 160 0 chr3 141025004 141025123 -18574660 + B1_Mus2 SINE Alu 2 139 -8 3 1660 426 53 0 0 chr3 141025123 141025180 -18574603 + (GA)n Simple_repeat Simple_repeat 1 57 0 4 1660 1937 149 27 73 chr3 141025269 141025681 -18574102 - ORR1B1 LTR MaLR -1 393 1 4 1660 1082 286 167 2 chr3 141026224 141026638 -18573145 + Lx6 LINE L1 6977 7458 -2 4 1660 317 306 128 39 chr3 141026737 141026839 -18572944 + RSINE1 SINE B4 31 141 -24 4 1660 405 0 0 0 chr3 141026859 141026904 -18572879 + (TAAA)n Simple_repeat Simple_repeat 2 46 0 4 1660 338 330 39 158 chr3 141027117 141027531 -18572252 + MLT1B LTR MaLR 1 390 0 4 1660 228 224 0 0 chr3 141027594 141027643 -18572140 + (CA)n Simple_repeat Simple_repeat 2 50 0 4 1660 2505 181 69 24 chr3 141028863 141029400 -18570383 + Lx4B LINE L1 6493 7053 -5 4 1660 370 207 114 76 chr3 141029896 141030027 -18569756 - MER3 DNA MER1_type 0 209 74 4 1660 719 236 117 49 chr3 141030747 141030970 -18568813 - Lx5 LINE L1 -75 6975 6738 4 1660 532 275 71 24 chr3 141030973 141031185 -18568598 - Lx5 LINE L1 -869 6181 5960 4 1660 1902 169 16 5 chr3 141031184 141031574 -18568209 + Lx5 LINE L1 5534 5938 -1112 5 1660 22 0 0 0 chr3 141033420 141033442 -18566341 + AT_rich Low_complexity Low_complexity 1 22 0 5 207 188 365 84 0 chr3 141033442 141033609 -18566174 + MIRb SINE MIR 36 216 -52 5 1661 407 288 81 12 chr3 141034039 141034211 -18565572 + L1M5 LINE L1 3068 3251 -2895 5 1661 350 236 122 30 chr3 141034260 141034391 -18565392 + L1MB8 LINE L1 6009 6151 -27 5 1661 249 33 0 0 chr3 141035209 141035239 -18564544 + (TAG)n Simple_repeat Simple_repeat 3 32 0 5 1661 21 0 0 0 chr3 141036716 141036737 -18563046 + AT_rich Low_complexity Low_complexity 1 21 0 5 1661 202 364 29 39 chr3 141037184 141037287 -18562496 + MIRm SINE MIR 163 264 -12 5 1661 231 379 27 60 chr3 141037471 141037620 -18562163 - MLT1H LTR MaLR -184 365 222 5 1661 22 56 0 0 chr3 141038575 141038611 -18561172 + AT_rich Low_complexity Low_complexity 1 36 0 5 1661 2039 94 52 49 chr3 141038743 141039069 -18560714 + ORR1A2 LTR MaLR 1 327 0 6 1661 316 341 38 15 chr3 141039495 141039626 -18560157 - RSINE1 SINE B4 -6 159 26 6 1661 387 0 0 0 chr3 141039797 141039840 -18559943 + (GA)n Simple_repeat Simple_repeat 2 44 0 6 1661 362 263 40 20 chr3 141040948 141041049 -18558734 - B3A SINE B2 -90 108 6 6 1661 366 354 13 64 chr3 141041094 141041251 -18558532 - Tigger1 DNA MER2_type -6 2412 2264 6 1661 495 284 37 38 chr3 141041281 141041502 -18558281 + B3A SINE B2 2 209 -7 6 1661 38127 11 0 7 chr3 141041643 141047057 -18552726 + L1Md_A LINE L1 214 5586 -297 6 1661 8856 11 0 0 chr3 141047057 141048053 -18551730 + L1Md_A LINE L1 5587 6582 0 6 1661 1476 293 109 102 chr3 141048057 141049034 -18550749 - Tigger1 DNA MER2_type -312 2106 1123 6 1661 24 0 0 0 chr3 141049863 141049887 -18549896 + AT_rich Low_complexity Low_complexity 1 24 0 6 1661 235 354 96 44 chr3 141049930 141050223 -18549560 + L2a LINE L2 3119 3426 0 6 1661 289 331 37 37 chr3 141050359 141050522 -18549261 + RSINE1 SINE B4 3 165 0 6 1661 670 23 11 11 chr3 141050653 141050742 -18549041 + (TA)n Simple_repeat Simple_repeat 2 90 0 7 1661 22 0 0 0 chr3 141051964 141051986 -18547797 + AT_rich Low_complexity Low_complexity 1 22 0 7 1661 21 57 0 0 chr3 141052091 141052126 -18547657 + AT_rich Low_complexity Low_complexity 1 35 0 7 1661 297 374 125 48 chr3 141052239 141053101 -18546682 + L2 LINE L2 2073 3001 -418 7 1661 375 60 0 0 chr3 141053214 141053264 -18546519 + (TG)n Simple_repeat Simple_repeat 1 50 0 7 1661 514 343 59 25 chr3 141053286 141053489 -18546294 - B4A SINE B4 0 292 83 7 1661 662 0 13 0 chr3 141055180 141055258 -18544525 + (CA)n Simple_repeat Simple_repeat 2 80 0 7 1661 279 0 0 0 chr3 141056503 141056534 -18543249 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 7 1661 249 33 0 0 chr3 141060058 141060088 -18539695 + (TGAA)n Simple_repeat Simple_repeat 3 32 0 7 1661 276 332 76 52 chr3 141060148 141060399 -18539384 - LTR16C LTR ERVL -1 488 232 7 1661 396 336 30 0 chr3 141061587 141061721 -18538062 - B1F SINE Alu -11 138 1 8 1661 2112 281 66 23 chr3 141063699 141064489 -18535294 + RCHARR1 DNA MER1_type 3 826 -148 8 1661 306 333 55 55 chr3 141064490 141064602 -18535181 + RSINE1 SINE B4 4 121 -44 8 1661 396 0 0 0 chr3 141064602 141064646 -18535137 + (CA)n Simple_repeat Simple_repeat 2 45 0 8 1661 306 333 55 55 chr3 141064646 141064660 -18535123 + RSINE1 SINE B4 122 130 -35 8 1661 22 70 0 0 chr3 141064673 141064716 -18535067 + AT_rich Low_complexity Low_complexity 1 43 0 8 1661 267 207 73 0 chr3 141064764 141064846 -18534937 + RCHARR1 DNA MER1_type 828 915 -59 8 1661 1344 326 114 47 chr3 141064853 141065950 -18533833 + Lx8 LINE L1 6298 7468 -5 8 1661 203 322 0 33 chr3 141066287 141066377 -18533406 + CT-rich Low_complexity Low_complexity 1 87 0 8 1661 1103 299 53 19 chr3 141066446 141066879 -18532904 - Lx7 LINE L1 -333 7363 6916 8 1661 367 337 83 39 chr3 141066913 141067117 -18532666 + Lx8 LINE L1 6682 6894 -579 8 1661 255 341 91 54 chr3 141067426 141067668 -18532115 + MTEb LTR MaLR 1 251 -108 8 1661 2636 129 65 46 chr3 141067704 141068182 -18531601 - Lx LINE L1 -7 6647 6161 9 1661 4407 131 6 1 chr3 141068196 141069188 -18530595 + Lx LINE L1 5166 6162 -492 9 1661 277 296 11 22 chr3 141069192 141069282 -18530501 + MTEb LTR MaLR 289 377 -2 8 1661 411 354 24 39 chr3 141070303 141070509 -18529274 + MIRb SINE MIR 34 236 -32 9 1661 445 349 0 23 chr3 141071572 141071701 -18528082 - ID_B1 SINE B4 -15 209 84 9 1661 277 354 12 0 chr3 141071742 141071824 -18527959 - ID4_ SINE ID 0 83 1 9 1661 249 355 123 68 chr3 141072040 141072348 -18527435 - L2 LINE L2 -1621 1798 1474 9 1661 711 33 0 0 chr3 141072479 141072569 -18527214 + (CA)n Simple_repeat Simple_repeat 2 91 0 9 1661 668 87 0 0 chr3 141073044 141073147 -18526636 - L1_Mus1 LINE L1 0 6567 6465 9 1661 1628 77 9 0 chr3 141073171 141073441 -18526342 - L1_Mus1 LINE L1 0 6567 6344 9 1661 247 211 27 40 chr3 141073943 141074017 -18525766 + CR1_Mam LINE CR1 1175 1247 -957 9 1661 514 330 207 28 chr3 141075026 141075422 -18524361 + MLT1F2 LTR MaLR 90 556 -4 9 1661 219 130 36 18 chr3 141075815 141075870 -18523913 + (TA)n Simple_repeat Simple_repeat 2 57 0 1 1661 351 0 0 0 chr3 141076103 141076142 -18523641 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 1 1661 284 307 0 33 chr3 141078246 141078337 -18521446 + PB1 SINE Alu 40 127 0 1 1661 257 279 63 0 chr3 141078395 141078474 -18521309 + B1F1 SINE Alu 64 147 -2 1 1661 725 254 9 47 chr3 141078602 141078817 -18520966 + B3 SINE B2 2 208 -8 1 1661 209 33 0 32 chr3 141078818 141078849 -18520934 + (TAA)n Simple_repeat Simple_repeat 1 30 0 1 1661 674 330 116 48 chr3 141080793 141081226 -18518557 - MLT2B3 LTR ERVL 0 554 93 1 1661 1068 131 0 0 chr3 141081892 141082067 -18517716 + (TCCC)n Simple_repeat Simple_repeat 4 178 0 1 1661 485 317 68 21 chr3 141082090 141082280 -18517503 + B4A SINE B4 4 202 -90 1 1661 180 305 120 50 chr3 141082592 141082692 -18517091 - MIRm SINE MIR -114 162 56 1 1661 356 257 99 0 chr3 141082931 141083032 -18516751 + Zaphod DNA Tip100 333 443 -3588 1 1661 324 127 0 0 chr3 141083053 141083108 -18516675 + (TG)n Simple_repeat Simple_repeat 2 56 0 1 1661 544 303 43 8 chr3 141083567 141083823 -18515960 - Lx9 LINE L1 -142 7502 7238 1 1661 226 290 0 0 chr3 141086368 141086430 -18513353 + CT-rich Low_complexity Low_complexity 1 62 0 1 1661 435 92 0 0 chr3 141086855 141086920 -18512863 + (TA)n Simple_repeat Simple_repeat 1 65 0 1 1661 288 315 220 5 chr3 141087118 141087305 -18512478 - B4A SINE B4 -65 227 2 1 1661 1639 248 21 81 chr3 141088057 141088489 -18511294 - Lx6 LINE L1 0 7460 7065 1 1661 1599 5 0 0 chr3 141088497 141088706 -18511077 + (TCTCCC)n Simple_repeat Simple_repeat 1 209 0 1 1661 7685 251 100 104 chr3 141088717 141091510 -18508273 - Lx6 LINE L1 -597 6863 3703 1 1661 4807 89 42 0 chr3 141091510 141092184 -18507599 - L1_Mus1 LINE L1 0 6567 5866 1 1661 9893 205 45 62 chr3 141092184 141093964 -18505819 - Lx6 LINE L1 -2184 3702 2460 1 1661 348 24 0 0 chr3 141093964 141094005 -18505778 + (TTTA)n Simple_repeat Simple_repeat 2 42 0 1 1661 9893 183 24 22 chr3 141094005 141094372 -18505411 - Lx6 LINE L1 -3420 2460 2086 1 1661 345 100 0 0 chr3 141094372 141094422 -18505361 + (CTTG)n Simple_repeat Simple_repeat 2 51 0 1 1661 9893 183 24 22 chr3 141094422 141095105 -18504678 - Lx6 LINE L1 -3795 2085 1412 1 1661 3708 189 194 3 chr3 141095095 141095995 -18503788 + L1_Mur2 LINE L1 4600 5671 -206 1 1661 211 211 85 34 chr3 141096627 141096686 -18503097 - B1_Mur1 SINE Alu 0 149 88 1 1661 428 328 0 0 chr3 141096744 141096866 -18502917 - B1_Mur1 SINE Alu -11 138 17 1 1661 24 0 0 0 chr3 141096945 141096969 -18502814 + AT_rich Low_complexity Low_complexity 1 24 0 1 1661 227 361 109 18 chr3 141099377 141099487 -18500296 + ZP3AR Satellite Satellite 50 169 -43 1 1661 627 121 81 0 chr3 141099417 141099516 -18500267 + BC1_Mm scRNA scRNA 1 107 -45 1 1661 23 33 0 0 chr3 141099930 141099960 -18499823 + AT_rich Low_complexity Low_complexity 1 30 0 1 1661 225 0 0 0 chr3 141102205 141102230 -18497553 + (A)n Simple_repeat Simple_repeat 1 25 0 1 1661 2014 135 3 63 chr3 141102370 141102718 -18497065 - ORR1A2 LTR MaLR 0 327 1 1 1661 27 0 0 0 chr3 141102823 141102850 -18496933 + AT_rich Low_complexity Low_complexity 1 27 0 1 1661 417 227 31 31 chr3 141104430 141104589 -18495194 - Lx9 LINE L1 0 7644 7486 1 1661 426 108 0 0 chr3 141104624 141104689 -18495094 + (CA)n Simple_repeat Simple_repeat 2 66 0 1 1661 212 59 58 19 chr3 141104816 141104868 -18494915 + (TA)n Simple_repeat Simple_repeat 2 55 0 1 1661 409 246 27 0 chr3 141104872 141104982 -18494801 - Lx9 LINE L1 -213 7431 7319 1 1661 481 308 94 19 chr3 141105330 141105638 -18494145 - Charlie2a DNA MER1_type -3 2858 2528 1 1661 706 244 43 25 chr3 141105729 141105964 -18493819 - Charlie2a DNA MER1_type -485 2376 2138 1 1661 603 27 0 0 chr3 141106018 141106091 -18493692 + (GTTTG)n Simple_repeat Simple_repeat 2 74 0 1 1661 1069 51 0 0 chr3 141106091 141106220 -18493563 - B1_Mm SINE Alu -8 139 11 1 1661 666 267 9 76 chr3 141107521 141107732 -18492051 - B3 SINE B2 -19 197 1 1 1661 24 32 0 0 chr3 141108026 141108057 -18491726 + AT_rich Low_complexity Low_complexity 1 31 0 1 1661 567 311 73 17 chr3 141108850 141109082 -18490701 + Tigger5 DNA MER2_type 2136 2380 -26 1 1661 459 0 0 0 chr3 141110576 141110627 -18489156 + (TA)n Simple_repeat Simple_repeat 1 51 0 1 1661 570 267 38 67 chr3 141110799 141111008 -18488775 - MER2 DNA MER2_type -19 326 124 1 1661 423 38 0 0 chr3 141111114 141111167 -18488616 + (TG)n Simple_repeat Simple_repeat 1 53 0 1 1661 21 0 0 0 chr3 141113417 141113438 -18486345 + AT_rich Low_complexity Low_complexity 1 21 0 1 1661 2950 78 26 28 chr3 141113582 141114005 -18485778 - L1_Mus2 LINE L1 -1 6565 6144 1 1661 213 65 0 0 chr3 141114393 141114424 -18485359 + (A)n Simple_repeat Simple_repeat 1 31 0 1 1661 24 32 0 0 chr3 141114462 141114493 -18485290 + AT_rich Low_complexity Low_complexity 1 31 0 1 1661 8876 85 12 1 chr3 141115895 141117921 -18481862 - L1_Mus1 LINE L1 -1 6566 4516 1 1661 331 112 3 0 chr3 141117935 141117996 -18481787 + L1Md_F LINE L1 901 974 -5750 1 1661 425 295 109 91 chr3 141118257 141118522 -18481261 + B4 SINE B4 1 270 -22 1 1661 225 0 0 0 chr3 141118580 141118605 -18481178 + (CA)n Simple_repeat Simple_repeat 2 26 0 1 1661 1268 271 66 82 chr3 141119777 141119815 -18479968 - RLTR11A2 LTR ERVK -30 497 448 1 1661 279 0 0 0 chr3 141119815 141119846 -18479937 + (CA)n Simple_repeat Simple_repeat 2 32 0 1 1661 288 0 0 0 chr3 141119846 141119877 -18479906 + (GA)n Simple_repeat Simple_repeat 2 33 0 1 1661 1268 271 66 82 chr3 141119877 141120324 -18479459 - RLTR11A2 LTR ERVK -80 447 20 1 1661 1177 256 179 6 chr3 141120884 141121241 -18478542 - MTD LTR MaLR 0 419 1 1 1661 251 304 96 21 chr3 141122212 141122306 -18477477 - B3A SINE B2 -72 126 26 1 1661 258 352 94 45 chr3 141122566 141122810 -18476973 + MLT1J LTR MaLR 236 491 -21 1 1661 285 327 173 75 chr3 141123237 141123544 -18476239 + MLT1K LTR MaLR 72 408 -187 1 1661 358 301 126 99 chr3 141123662 141123794 -18475989 + MLT1A1 LTR MaLR 26 157 -251 1 1661 306 0 0 0 chr3 141123794 141123828 -18475955 + (TG)n Simple_repeat Simple_repeat 1 34 0 1 1661 358 301 126 99 chr3 141123828 141124068 -18475715 + MLT1A1 LTR MaLR 158 408 0 1 1661 267 366 0 0 chr3 141125154 141125255 -18474528 - L2a LINE L2 -26 3400 3300 1 1661 552 272 72 14 chr3 141126029 141126167 -18473616 - B1F2 SINE Alu -2 147 2 1 1661 188 319 21 11 chr3 141126571 141126666 -18473117 - MIR SINE MIR -52 210 115 1 1661 189 0 0 0 chr3 141127541 141127562 -18472221 + (A)n Simple_repeat Simple_repeat 1 21 0 1 1661 316 214 122 37 chr3 141128143 141128250 -18471533 + HAL1-2a_MD LINE L1 213 328 -2696 1 1661 387 0 0 0 chr3 141129712 141129755 -18470028 + (TTTA)n Simple_repeat Simple_repeat 3 45 0 1 1661 324 0 0 0 chr3 141129836 141129872 -18469911 + (CA)n Simple_repeat Simple_repeat 2 37 0 1 1661 336 24 0 0 chr3 141131579 141131620 -18468163 + (TG)n Simple_repeat Simple_repeat 1 41 0 1 1661 372 236 70 35 chr3 141132063 141132177 -18467606 + PB1D7 SINE Alu 2 119 -1 1 1661 215 266 0 132 chr3 141133035 141133126 -18466657 - PB1D10 SINE Alu -34 83 5 1 1661 1027 186 39 104 chr3 141133199 141133535 -18466248 + RLTRETN_Mm LTR ERVK 9 322 0 1 1661 387 268 102 32 chr3 141133690 141133881 -18465902 + MIR SINE MIR 20 221 -41 1 1661 22 0 0 0 chr3 141135592 141135614 -18464169 + AT_rich Low_complexity Low_complexity 1 22 0 1 1661 264 111 0 0 chr3 141136651 141136696 -18463087 + (TTG)n Simple_repeat Simple_repeat 2 46 0 1 1661 28 0 0 0 chr3 141137375 141137403 -18462380 + AT_rich Low_complexity Low_complexity 1 28 0 1 1661 324 0 0 0 chr3 141137529 141137565 -18462218 + (TG)n Simple_repeat Simple_repeat 1 36 0 1 1661 21 0 0 0 chr3 141137735 141137756 -18462027 + AT_rich Low_complexity Low_complexity 1 21 0 1 1661 25 31 0 0 chr3 141138404 141138436 -18461347 + AT_rich Low_complexity Low_complexity 1 32 0 1 1661 636 14 0 0 chr3 141140883 141140956 -18458827 + (TC)n Simple_repeat Simple_repeat 1 73 0 1 1661 492 313 60 6 chr3 141141680 141141863 -18457920 - B3A SINE B2 -5 193 1 1 1661 402 88 29 0 chr3 141144666 141144733 -18455050 + L1_Mus3 LINE L1 6253 6332 -306 1 1661 275 96 20 20 chr3 141144796 141144875 -18454908 + L1_Mus3 LINE L1 6489 6633 -3 1 1661 22 0 0 0 chr3 141144880 141144902 -18454881 + AT_rich Low_complexity Low_complexity 1 22 0 1 1661 287 241 12 37 chr3 141146512 141146594 -18453189 + CT-rich Low_complexity Low_complexity 1 80 0 1 1661 225 119 0 0 chr3 141147500 141147542 -18452241 + (TC)n Simple_repeat Simple_repeat 1 42 0 1 1661 378 57 0 0 chr3 141147542 141147595 -18452188 + (TG)n Simple_repeat Simple_repeat 2 54 0 1 1661 564 325 76 32 chr3 141147599 141147850 -18451933 - B4 SINE B4 -21 271 10 1 1661 423 0 0 0 chr3 141148164 141148211 -18451572 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 1661 686 307 15 1 chr3 141149188 141149386 -18450397 - B3A SINE B2 -12 204 2 1 1661 333 326 107 59 chr3 141149429 141149719 -18450064 + ORR1E LTR MaLR 1 304 -55 1 1661 324 0 0 0 chr3 141149749 141149785 -18449998 + (CA)n Simple_repeat Simple_repeat 1 36 0 1 1661 277 276 45 62 chr3 141150387 141150499 -18449284 - B3 SINE B2 0 216 107 1 1661 281 36 70 35 chr3 141150539 141150596 -18449187 + MYSERV16_I-int LTR ERVK 1212 1270 -1056 1 1661 1146 84 22 22 chr3 141150610 141150793 -18448990 - L1Md_F2 LINE L1 -14 6568 6386 1 1661 3970 88 10 0 chr3 141150793 141151385 -18448398 + L1_Mm LINE L1 2995 3592 -2291 1 1661 759 227 121 9 chr3 141151440 141151769 -18448014 - ORR1D1 LTR MaLR 0 374 9 1 1661 277 245 64 28 chr3 141152571 141152680 -18447103 + Tigger14a DNA MER2_type 112 224 -100 1 1661 2345 72 119 11 chr3 141152952 141153304 -18446479 - RLTR10 LTR ERVK 0 390 1 1 1661 522 148 0 0 chr3 141153310 141153411 -18446372 + (TG)n Simple_repeat Simple_repeat 2 102 0 1 1661 180 0 0 0 chr3 141153529 141153549 -18446234 + (TTAA)n Simple_repeat Simple_repeat 1 20 0 1 1661 23 33 0 0 chr3 141153922 141153952 -18445831 + AT_rich Low_complexity Low_complexity 1 30 0 2 1661 348 83 0 0 chr3 141154451 141154499 -18445284 + (T)n Simple_repeat Simple_repeat 1 48 0 2 1661 219 283 132 9 chr3 141154574 141154688 -18445095 - MIR SINE MIR -61 147 20 2 1661 295 304 110 25 chr3 141154774 141154892 -18444891 - MER102c DNA MER1_type 0 331 204 2 1661 24 0 0 0 chr3 141155524 141155548 -18444235 + AT_rich Low_complexity Low_complexity 1 24 0 2 1661 477 224 26 77 chr3 141156085 141156240 -18443543 + LTR16A1 LTR ERVL 4 150 -306 2 1661 1154 292 0 28 chr3 141156694 141157053 -18442730 + Lx5 LINE L1 6685 7033 -17 2 1661 326 244 103 24 chr3 141158052 141158178 -18441605 - L1MEf LINE L1 -4132 2068 1933 2 1661 254 310 9 57 chr3 141158333 141158439 -18441344 + PB1D10 SINE Alu 1 101 -16 2 1661 259 293 48 8 chr3 141158481 141158605 -18441178 + MLT1B LTR MaLR 238 366 -24 2 1661 846 154 0 0 chr3 141160254 141160403 -18439380 + CT-rich Low_complexity Low_complexity 6 154 0 2 1661 2289 138 11 3 chr3 141160413 141160777 -18439006 - Lx LINE L1 -6 6648 6282 2 1661 33 0 0 0 chr3 141160944 141160977 -18438806 + AT_rich Low_complexity Low_complexity 1 33 0 2 1661 409 202 42 18 chr3 141162171 141162337 -18437446 + (TA)n Simple_repeat Simple_repeat 2 171 0 2 1661 237 175 25 0 chr3 141163322 141163362 -18436421 - B1_Mus2 SINE Alu -23 124 84 2 1662 795 80 14 14 chr3 141164597 141164736 -18435047 + (TCTA)n Simple_repeat Simple_repeat 2 140 0 2 1662 245 174 14 0 chr3 141165430 141165499 -18434284 + T-rich Low_complexity Low_complexity 5 74 0 2 1662 21 36 0 0 chr3 141165634 141165662 -18434121 + AT_rich Low_complexity Low_complexity 1 28 0 2 1662 21 0 0 0 chr3 141165684 141165705 -18434078 + AT_rich Low_complexity Low_complexity 1 21 0 2 1662 342 45 0 0 chr3 141166150 141166194 -18433589 + (TG)n Simple_repeat Simple_repeat 2 45 0 2 1662 342 0 0 0 chr3 141167134 141167172 -18432611 + (CA)n Simple_repeat Simple_repeat 1 38 0 2 1662 318 148 0 0 chr3 141167921 141167975 -18431808 + (GGAA)n Simple_repeat Simple_repeat 2 55 0 2 1662 180 0 0 0 chr3 141168872 141168892 -18430891 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 2 1662 297 280 27 0 chr3 141169319 141169394 -18430389 - BC1_Mm scRNA scRNA -67 85 9 2 1662 260 313 20 10 chr3 141169963 141170063 -18429720 + CT-rich Low_complexity Low_complexity 4 104 0 2 1662 487 312 7 27 chr3 141172033 141172181 -18427602 + RSINE1 SINE B4 12 156 -9 2 1662 1176 106 0 0 chr3 141173319 141173498 -18426285 + (GGA)n Simple_repeat Simple_repeat 2 180 0 2 1662 333 0 0 0 chr3 141173501 141173538 -18426245 + (GGAGAA)n Simple_repeat Simple_repeat 1 37 0 2 1662 38 61 0 0 chr3 141173608 141173674 -18426109 + AT_rich Low_complexity Low_complexity 1 66 0 2 1662 21 0 0 0 chr3 141173701 141173722 -18426061 + AT_rich Low_complexity Low_complexity 1 21 0 2 1662 236 215 87 58 chr3 141173831 141173969 -18425814 + Lx9 LINE L1 7502 7643 -1 2 1662 567 96 0 0 chr3 141175247 141175330 -18424453 + (TG)n Simple_repeat Simple_repeat 2 84 0 2 1662 532 223 11 0 chr3 141176433 141176608 -18423175 + (TG)n Simple_repeat Simple_repeat 2 178 0 2 1662 1289 93 44 0 chr3 141176764 141176946 -18422837 - B2_Mm2 SINE B2 -4 191 2 2 1662 387 0 0 0 chr3 141179713 141179756 -18420027 + (TA)n Simple_repeat Simple_repeat 2 44 0 2 1662 21 0 0 0 chr3 141179827 141179848 -18419935 + AT_rich Low_complexity Low_complexity 1 21 0 2 1662 1223 228 113 19 chr3 141180198 141180567 -18419216 - MTD LTR MaLR -14 405 6 2 1662 180 343 109 22 chr3 141180700 141180837 -18418946 - MIRb SINE MIR -3 265 117 2 1662 3022 41 0 0 chr3 141181041 141181409 -18418374 + L1Md_F3 LINE L1 6217 6584 0 2 1662 22 35 0 0 chr3 141181894 141181923 -18417860 + AT_rich Low_complexity Low_complexity 1 29 0 2 1662 1008 293 110 59 chr3 141182916 141183519 -18416264 - Lx8 LINE L1 -17 7456 6817 2 1662 243 0 0 0 chr3 141183519 141183546 -18416237 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2 1662 1008 293 110 59 chr3 141183546 141183587 -18416196 - Lx8 LINE L1 -657 6816 6779 2 1662 1112 299 109 34 chr3 141184788 141185543 -18414240 - Lx9 LINE L1 -28 7616 6806 2 1662 26 0 0 0 chr3 141187792 141187818 -18411965 + AT_rich Low_complexity Low_complexity 1 26 0 2 1662 537 68 0 0 chr3 141187935 141188009 -18411774 + (CA)n Simple_repeat Simple_repeat 1 74 0 2 1662 321 189 0 0 chr3 141189010 141189100 -18410683 + CT-rich Low_complexity Low_complexity 2 91 0 2 1662 419 305 159 109 chr3 141189122 141189398 -18410385 - B4 SINE B4 0 292 3 2 1662 218 360 0 11 chr3 141190449 141190539 -18409244 + L2 LINE L2 2286 2374 -1045 2 1662 1541 153 0 50 chr3 141191091 141191373 -18408410 + Lx2B LINE L1 6677 6944 -56 2 1662 351 0 0 0 chr3 141191672 141191711 -18408072 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 2 1662 23 33 0 0 chr3 141193933 141193963 -18405820 + AT_rich Low_complexity Low_complexity 1 30 0 2 1662 334 105 41 21 chr3 141195166 141195263 -18404520 + A-rich Low_complexity Low_complexity 2 100 0 2 1662 1401 59 5 5 chr3 141195359 141195547 -18404236 - MT2C_Mm LTR ERVL 0 475 288 2 1662 534 130 0 42 chr3 141195549 141195669 -18404114 + GA-rich Low_complexity Low_complexity 1 115 0 2 1662 567 141 18 10 chr3 141195669 141195778 -18404005 - MT2C_Mm LTR ERVL -228 356 211 2 1662 1115 82 0 0 chr3 141196260 141196407 -18403376 + B1_Mus1 SINE Alu 1 147 -1 2 1662 187 300 117 29 chr3 141196642 141196745 -18403038 + L2a LINE L2 3312 3423 -3 2 1662 407 350 102 48 chr3 141198095 141198351 -18401432 - MLT2B4 LTR ERVL -290 427 159 2 1662 196 281 0 45 chr3 141198788 141198855 -18400928 - MIR SINE MIR 0 262 199 2 1662 191 390 10 31 chr3 141198875 141198973 -18400810 - MIR SINE MIR -145 117 22 2 1662 405 0 0 0 chr3 141199825 141199870 -18399913 + (CA)n Simple_repeat Simple_repeat 2 46 0 2 1662 320 78 39 0 chr3 141200188 141200239 -18399544 + (TTTTC)n Simple_repeat Simple_repeat 2 54 0 2 1662 186 296 27 40 chr3 141201184 141201258 -18398525 - MIR SINE MIR -111 151 79 2 1662 1053 72 0 0 chr3 141201949 141202101 -18397682 + (TG)n Simple_repeat Simple_repeat 1 152 0 2 1662 684 296 97 0 chr3 141202102 141202349 -18397434 - MER2 DNA MER2_type -27 318 48 2 1662 342 0 0 0 chr3 141204623 141204661 -18395122 + (GA)n Simple_repeat Simple_repeat 1 38 0 2 1662 889 268 14 0 chr3 141204671 141204884 -18394899 + B3 SINE B2 1 216 0 2 1662 24 0 0 0 chr3 141204888 141204912 -18394871 + AT_rich Low_complexity Low_complexity 1 24 0 2 1662 303 295 113 27 chr3 141205100 141205250 -18394533 - RSINE1 SINE B4 0 165 3 2 1662 702 203 0 0 chr3 141206136 141206284 -18393499 + CT-rich Low_complexity Low_complexity 2 149 0 2 1662 24 0 0 0 chr3 141206307 141206331 -18393452 + AT_rich Low_complexity Low_complexity 1 24 0 2 1662 216 0 0 0 chr3 141206741 141206765 -18393018 + (TCCC)n Simple_repeat Simple_repeat 3 26 0 2 1662 269 261 58 0 chr3 141206765 141206834 -18392949 - ID4 SINE ID -1 82 10 2 1662 5283 117 24 18 chr3 141206959 141207798 -18391985 - Lx LINE L1 -2 6652 5809 2 1662 690 13 0 0 chr3 141208026 141208105 -18391678 + (TC)n Simple_repeat Simple_repeat 1 79 0 2 1662 252 0 0 0 chr3 141208105 141208132 -18391651 + (CA)n Simple_repeat Simple_repeat 1 28 0 2 1662 579 320 87 14 chr3 141208259 141208642 -18391141 - MLT1F1 LTR MaLR -123 446 3 2 1662 224 297 31 0 chr3 141208779 141208843 -18390940 + L2b LINE L2 3310 3375 0 2 1662 702 259 94 11 chr3 141209444 141209635 -18390148 + B3 SINE B2 1 207 -9 2 1662 25 0 0 0 chr3 141213851 141213876 -18385907 + AT_rich Low_complexity Low_complexity 1 25 0 2 1662 234 259 128 12 chr3 141215366 141215452 -18384331 - PB1D7 SINE Alu -3 117 22 2 1662 23 0 0 0 chr3 141215502 141215525 -18384258 + AT_rich Low_complexity Low_complexity 1 23 0 2 1662 459 278 32 64 chr3 141215531 141215719 -18384064 - B3A SINE B2 -16 182 1 2 1662 282 180 0 0 chr3 141216985 141217046 -18382737 + (CA)n Simple_repeat Simple_repeat 2 62 0 2 1662 303 167 0 77 chr3 141217050 141217115 -18382668 + HAL1-3A_ME LINE L1 1975 2034 -824 2 1662 289 314 101 85 chr3 141219085 141219461 -18380322 - MamRep605 Unknown Unknown -256 620 239 2 1662 21 0 0 0 chr3 141221134 141221155 -18378628 + AT_rich Low_complexity Low_complexity 1 21 0 2 1662 5313 84 18 11 chr3 141221243 141221978 -18377805 - L1_Mus2 LINE L1 0 6566 5827 2 1662 234 0 0 0 chr3 141222076 141222102 -18377681 + (TTG)n Simple_repeat Simple_repeat 2 27 0 2 1662 286 312 136 14 chr3 141224921 141225061 -18374722 + B4A SINE B4 134 290 -2 2 1662 215 61 0 29 chr3 141225471 141225505 -18374278 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 2 1662 769 51 34 68 chr3 141225508 141225653 -18374130 - B1_Mus1 SINE Alu 0 150 1 2 1662 729 184 14 28 chr3 141226262 141226407 -18373376 + B1_Mus1 SINE Alu 1 143 -5 2 1662 25 0 0 0 chr3 141226917 141226942 -18372841 + AT_rich Low_complexity Low_complexity 1 25 0 2 1662 459 341 8 0 chr3 141227465 141227591 -18372192 + RSINE1 SINE B4 14 140 -25 2 1662 21 57 0 0 chr3 141227633 141227668 -18372115 + AT_rich Low_complexity Low_complexity 1 35 0 2 1662 360 0 0 0 chr3 141227917 141227957 -18371826 + (TG)n Simple_repeat Simple_repeat 1 40 0 2 1662 333 0 0 0 chr3 141230478 141230515 -18369268 + (GA)n Simple_repeat Simple_repeat 2 38 0 2 1662 250 346 97 8 chr3 141230989 141231123 -18368660 + MIR SINE MIR 15 160 -102 2 1662 975 115 7 0 chr3 141232434 141232582 -18367201 - Lx LINE L1 -309 6345 6197 2 1662 633 288 61 75 chr3 141233236 141233557 -18366226 - MTEa LTR MaLR -48 331 1 2 1662 908 286 53 8 chr3 141234008 141234255 -18365528 - Lx5 LINE L1 -5 7045 6788 2 1662 2479 211 58 9 chr3 141234248 141234799 -18364984 + Lx5 LINE L1 6212 6789 -261 2 1662 27 29 0 0 chr3 141235808 141235842 -18363941 + AT_rich Low_complexity Low_complexity 1 34 0 3 1662 432 0 0 0 chr3 141236456 141236504 -18363279 + (TG)n Simple_repeat Simple_repeat 2 49 0 3 1662 852 333 99 36 chr3 141237150 141237736 -18362047 - Tigger9b DNA MER2_type 0 624 2 3 1662 427 286 37 41 chr3 141239477 141239721 -18360062 + L1ME2z LINE L1 6192 6434 -10 3 1662 822 94 0 0 chr3 141241136 141241253 -18358530 + (TC)n Simple_repeat Simple_repeat 2 118 0 3 1662 229 224 26 0 chr3 141241479 141241555 -18358228 + (CA)n Simple_repeat Simple_repeat 2 79 0 3 1662 3132 41 3 5 chr3 141241646 141242036 -18357747 + L1Md_F3 LINE L1 6182 6570 -14 3 1662 28 91 0 0 chr3 141242818 141242895 -18356888 + AT_rich Low_complexity Low_complexity 1 77 0 3 1662 1400 98 52 111 chr3 141243367 141243656 -18356127 + L1Md_F2 LINE L1 6312 6582 0 3 1662 351 0 0 0 chr3 141244098 141244137 -18355646 + (TG)n Simple_repeat Simple_repeat 1 39 0 3 1662 255 301 48 10 chr3 141245156 141245260 -18354523 + L3 LINE CR1 3806 3913 -576 3 1662 279 0 0 0 chr3 141246207 141246238 -18353545 + (TC)n Simple_repeat Simple_repeat 2 32 0 3 1662 432 0 0 0 chr3 141246250 141246298 -18353485 + (GA)n Simple_repeat Simple_repeat 1 48 0 3 1662 740 301 6 17 chr3 141246298 141246464 -18353319 - B3A SINE B2 -24 174 9 3 1662 7234 32 1 0 chr3 141246811 141247663 -18352120 + L1Md_A LINE L1 5729 6581 -1 3 1662 272 27 27 0 chr3 141247704 141247741 -18352042 + (TG)n Simple_repeat Simple_repeat 2 39 0 3 1662 5512 160 60 2 chr3 141248327 141249384 -18350399 - Lx4A LINE L1 -384 6674 5587 3 1662 1934 168 63 25 chr3 141249388 141249784 -18349999 + Lx4A LINE L1 6642 7052 -6 3 1662 382 302 22 37 chr3 141250111 141250245 -18349538 - B1F SINE Alu -17 132 1 3 1662 190 200 0 48 chr3 141251184 141251226 -18348557 - MER5A DNA MER1_type -55 134 95 3 1662 825 137 8 0 chr3 141254123 141254247 -18345536 + B2_Mm2 SINE B2 2 126 -69 3 1662 914 0 9 0 chr3 141254247 141254353 -18345430 + (GAAA)n Simple_repeat Simple_repeat 1 107 0 3 1662 711 0 0 0 chr3 141254353 141254432 -18345351 + (GGGA)n Simple_repeat Simple_repeat 3 81 0 3 1662 510 326 18 101 chr3 141254438 141254656 -18345127 - B4 SINE B4 -89 203 4 3 1662 252 0 0 0 chr3 141255001 141255029 -18344754 + (T)n Simple_repeat Simple_repeat 1 28 0 3 1662 642 58 0 0 chr3 141255689 141255776 -18344007 + (TC)n Simple_repeat Simple_repeat 2 88 0 3 1662 204 97 0 0 chr3 141255791 141255822 -18343961 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 3 1662 281 286 14 0 chr3 141257926 141257996 -18341787 - ID4_ SINE ID -11 72 2 3 1662 868 299 26 81 chr3 141258014 141258396 -18341387 - MTEb LTR MaLR -1 378 18 3 1662 3386 87 12 4 chr3 141258778 141259262 -18340521 + Lx LINE L1 6167 6654 0 3 1662 28 0 0 0 chr3 141259372 141259400 -18340383 + AT_rich Low_complexity Low_complexity 1 28 0 3 1662 1283 289 27 40 chr3 141259777 141260224 -18339559 - MER31A LTR ERV1 -44 441 1 3 1662 411 21 0 0 chr3 141261349 141261397 -18338386 + (TG)n Simple_repeat Simple_repeat 2 49 0 3 1662 330 87 0 0 chr3 141261802 141261848 -18337935 + (GAA)n Simple_repeat Simple_repeat 2 47 0 3 1662 726 159 0 0 chr3 141264634 141264779 -18335004 + CT-rich Low_complexity Low_complexity 1 145 0 3 1662 821 153 184 31 chr3 141264896 141265092 -18334691 + URR1A DNA MER1_type 1 226 0 3 1662 405 299 0 0 chr3 141265875 141265972 -18333811 + B1F SINE Alu 6 102 -47 3 1662 36196 32 1 0 chr3 141266619 141273590 -18326193 - L1Md_T LINE L1 0 6585 1 3 1662 21 0 0 0 chr3 141275306 141275327 -18324456 + AT_rich Low_complexity Low_complexity 1 21 0 3 1662 294 29 0 0 chr3 141277147 141277182 -18322601 + (GA)n Simple_repeat Simple_repeat 2 36 0 3 1662 704 154 8 0 chr3 141277789 141277906 -18321877 - RMER4B LTR ERVK -451 134 17 3 1662 414 39 0 0 chr3 141278167 141278219 -18321564 + (T)n Simple_repeat Simple_repeat 1 52 0 3 1662 303 175 0 17 chr3 141279591 141279649 -18320134 - B1_Mus2 SINE Alu -89 58 2 3 1662 24 32 0 0 chr3 141279691 141279722 -18320061 + AT_rich Low_complexity Low_complexity 1 31 0 3 1662 507 305 33 41 chr3 141279840 141280110 -18319673 - MLT1E1A LTR MaLR -1 679 412 3 1662 273 151 0 0 chr3 141280116 141280169 -18319614 + (TTGTG)n Simple_repeat Simple_repeat 2 54 0 3 1662 211 325 47 24 chr3 141280169 141280182 -18319601 - B4A SINE B4 -112 180 94 3 1662 240 347 14 0 chr3 141280182 141280254 -18319529 - PB1D10 SINE Alu -36 81 9 3 1662 288 287 55 5 chr3 141283439 141283542 -18316241 + MIR SINE MIR 117 225 -43 3 1662 27 0 0 0 chr3 141285028 141285055 -18314728 + AT_rich Low_complexity Low_complexity 1 27 0 3 1662 3832 102 11 12 chr3 141285500 141286068 -18313715 - RMER2 LTR ERV1 0 567 1 3 1662 224 273 20 20 chr3 141286361 141286462 -18313321 + GA-rich Low_complexity Low_complexity 4 104 0 3 1662 22 0 0 0 chr3 141287636 141287658 -18312125 + AT_rich Low_complexity Low_complexity 1 22 0 3 1662 300 250 225 0 chr3 141288562 141288682 -18311101 + MIRc SINE MIR 105 251 -17 3 1662 1096 234 61 22 chr3 141289346 141289705 -18310078 - Charlie5 DNA MER1_type -9 2615 2243 3 1662 33 56 0 0 chr3 141289711 141289765 -18310018 + AT_rich Low_complexity Low_complexity 1 54 0 3 1662 25 0 0 0 chr3 141289945 141289970 -18309813 + AT_rich Low_complexity Low_complexity 1 25 0 3 1662 216 383 31 0 chr3 141290467 141290595 -18309188 + MIR SINE MIR 17 148 -114 3 1662 297 0 0 0 chr3 141292130 141292163 -18307620 + (CA)n Simple_repeat Simple_repeat 2 34 0 3 1662 183 80 0 0 chr3 141293593 141293618 -18306165 + (TA)n Simple_repeat Simple_repeat 2 26 0 3 1662 436 308 0 0 chr3 141293649 141293753 -18306030 - B1F SINE Alu -14 135 32 3 1662 2026 309 156 35 chr3 141294193 141294972 -18304811 - Lx8 LINE L1 -12 7461 6539 3 1662 4678 20 2 4 chr3 141294972 141295514 -18304269 + L1Md_F2 LINE L1 6030 6570 -12 3 1662 2026 309 156 35 chr3 141295514 141295526 -18304257 - Lx8 LINE L1 -935 6538 6534 3 1662 207 0 0 0 chr3 141295526 141295549 -18304234 + (TA)n Simple_repeat Simple_repeat 2 24 0 3 207 2026 309 156 35 chr3 141295549 141295846 -18303937 - Lx8 LINE L1 -940 6533 6240 3 1663 222 204 23 0 chr3 141296046 141296090 -18303693 + C-rich Low_complexity Low_complexity 4 48 0 3 1663 501 322 28 7 chr3 141297080 141297224 -18302559 - B3A SINE B2 -34 164 18 3 1663 1024 56 21 0 chr3 141297322 141297465 -18302318 + (TAGA)n Simple_repeat Simple_repeat 1 146 0 3 1663 543 31 0 0 chr3 141297471 141297536 -18302247 + (TGGG)n Simple_repeat Simple_repeat 4 68 0 3 1663 1519 237 48 6 chr3 141297576 141297911 -18301872 - MTD LTR MaLR -70 349 1 3 1663 378 0 0 0 chr3 141297929 141297971 -18301812 + (CA)n Simple_repeat Simple_repeat 2 43 0 3 1663 276 30 0 0 chr3 141298913 141298946 -18300837 + (CA)n Simple_repeat Simple_repeat 1 33 0 3 1663 466 325 34 113 chr3 141300526 141300703 -18299080 + RSINE1 SINE B4 3 165 0 3 1663 191 140 20 0 chr3 141300851 141300901 -18298882 + A-rich Low_complexity Low_complexity 2 52 0 3 1663 22 0 0 0 chr3 141303725 141303747 -18296036 + AT_rich Low_complexity Low_complexity 1 22 0 3 1663 1401 74 21 0 chr3 141304087 141304276 -18295507 - B2_Mm1a SINE B2 0 193 1 3 1663 189 80 0 0 chr3 141305014 141305039 -18294744 - L2c LINE L2 -14 3373 3349 3 1663 266 159 23 47 chr3 141305199 141305285 -18294498 + (TTA)n Simple_repeat Simple_repeat 1 84 0 3 1663 406 169 0 0 chr3 141305853 141305924 -18293859 + MER115 DNA Tip100 582 652 -41 3 1663 363 60 0 0 chr3 141307930 141307980 -18291803 + (TTTG)n Simple_repeat Simple_repeat 3 52 0 3 1663 366 257 0 0 chr3 141308044 141308114 -18291669 + PB1D10 SINE Alu 1 70 -47 3 1663 209 224 0 33 chr3 141308129 141308189 -18291594 + GA-rich Low_complexity Low_complexity 3 60 0 3 1663 21 36 0 0 chr3 141308427 141308455 -18291328 + AT_rich Low_complexity Low_complexity 1 28 0 3 1663 210 336 62 8 chr3 141309041 141309170 -18290613 - MIR SINE MIR -46 216 81 3 1663 277 264 6 130 chr3 141309260 141309400 -18290383 - PB1D10 SINE Alu -1 116 1 3 1663 228 100 0 0 chr3 141309649 141309689 -18290094 + (TTGG)n Simple_repeat Simple_repeat 1 40 0 3 1663 3609 128 10 33 chr3 141310552 141311128 -18288655 - RMER2 LTR ERV1 -4 563 1 3 1663 21 36 0 0 chr3 141311621 141311649 -18288134 + AT_rich Low_complexity Low_complexity 1 28 0 3 1663 23 33 0 0 chr3 141313210 141313240 -18286543 + AT_rich Low_complexity Low_complexity 1 30 0 3 1663 305 307 27 0 chr3 141313249 141313324 -18286459 - B1F SINE Alu -8 141 65 3 1663 1034 116 0 0 chr3 141314299 141314446 -18285337 - B1_Mus1 SINE Alu -1 147 1 3 1663 278 261 98 0 chr3 141314486 141314578 -18285205 - MER33 DNA MER1_type -205 119 19 3 1663 673 278 72 19 chr3 141314616 141314825 -18284958 - ID_B1 SINE B4 -1 223 4 3 1663 1955 104 120 3 chr3 141315760 141316077 -18283706 + Lx LINE L1 6300 6653 -1 3 1663 324 375 74 60 chr3 141316503 141316855 -18282928 - LTR31 LTR ERV1 -25 594 238 3 1663 464 333 68 14 chr3 141317036 141317255 -18282528 - MER67B LTR ERV1 -151 510 280 3 1663 524 240 85 0 chr3 141317482 141317611 -18282172 + B1_Mur3 SINE Alu 2 141 -8 3 1663 225 0 0 0 chr3 141317614 141317639 -18282144 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 3 1663 228 275 42 76 chr3 141317721 141317839 -18281944 + Charlie5 DNA MER1_type 1062 1175 -1449 3 1663 1062 140 0 43 chr3 141318374 141318583 -18281200 - Lx LINE L1 0 6654 6455 3 1663 3595 146 18 10 chr3 141318586 141319208 -18280575 + L1_Mur2 LINE L1 4214 4840 -1037 3 1663 183 342 13 13 chr3 141319436 141319513 -18280270 - MIR SINE MIR -14 248 172 3 1663 746 139 0 7 chr3 141319538 141319676 -18280107 + (GGA)n Simple_repeat Simple_repeat 1 137 0 4 1663 1119 12 53 0 chr3 141319676 141319845 -18279938 + (GAA)n Simple_repeat Simple_repeat 3 180 0 4 1663 22 0 0 0 chr3 141319999 141320021 -18279762 + AT_rich Low_complexity Low_complexity 1 22 0 4 1663 796 336 28 21 chr3 141320166 141320452 -18279331 - Tigger7 DNA MER2_type -2194 297 10 4 1663 546 98 0 0 chr3 141321193 141321275 -18278508 + (TG)n Simple_repeat Simple_repeat 1 82 0 4 1663 230 179 18 0 chr3 141321275 141321331 -18278452 + GA-rich Low_complexity Low_complexity 2 58 0 4 1663 734 319 82 13 chr3 141321342 141321648 -18278135 - Lx8 LINE L1 -208 7265 6933 4 1663 233 268 100 30 chr3 141322251 141322351 -18277432 + MER91C DNA Tip100 29 135 -5 4 1663 283 32 14 87 chr3 141324168 141324237 -18275546 + (TTTTTG)n Simple_repeat Simple_repeat 3 66 0 4 1663 989 119 7 0 chr3 141324240 141324383 -18275400 - B1_Mus1 SINE Alu -4 144 1 4 1663 326 165 13 0 chr3 141324441 141324520 -18275263 + (TG)n Simple_repeat Simple_repeat 1 80 0 4 1663 650 319 0 0 chr3 141324520 141324702 -18275081 - B3A SINE B2 -16 182 1 4 1663 22 35 0 0 chr3 141324867 141324896 -18274887 + AT_rich Low_complexity Low_complexity 1 29 0 4 1663 360 331 67 6 chr3 141324974 141325153 -18274630 + MIR SINE MIR 67 256 -6 4 1663 404 261 21 43 chr3 141325419 141325559 -18274224 + B1F SINE Alu 4 140 -9 4 1663 341 75 19 0 chr3 141325992 141326045 -18273738 + (TTGG)n Simple_repeat Simple_repeat 2 55 0 4 1663 236 30 30 0 chr3 141326282 141326315 -18273468 + (TTG)n Simple_repeat Simple_repeat 2 35 0 4 1663 409 180 54 9 chr3 141327404 141327516 -18272267 + Lx9 LINE L1 7521 7637 -7 4 1663 3588 32 28 2 chr3 141328193 141328629 -18271154 - L1Md_A LINE L1 0 6582 6136 4 1663 6578 17 0 0 chr3 141328629 141329645 -18270138 + L1Md_A LINE L1 5132 6147 -435 4 1663 326 320 97 60 chr3 141330488 141330770 -18269013 + MTEa LTR MaLR 54 379 0 4 1663 1840 243 78 49 chr3 141331267 141331835 -18267948 - RLTR31A_Mm LTR ERVK 0 584 1 4 1663 554 306 82 34 chr3 141332585 141332664 -18267119 + B4A SINE B4 1 79 -213 4 1663 189 0 0 0 chr3 141332664 141332685 -18267098 + (CA)n Simple_repeat Simple_repeat 1 21 0 4 1663 423 0 0 0 chr3 141332687 141332734 -18267049 + (TG)n Simple_repeat Simple_repeat 1 47 0 4 1663 401 0 20 0 chr3 141332734 141332782 -18267001 + (GA)n Simple_repeat Simple_repeat 1 50 0 4 1663 554 306 82 34 chr3 141332782 141332965 -18266818 + B4A SINE B4 80 272 -20 4 1663 264 303 90 74 chr3 141333497 141333686 -18266097 - MLT2C2 LTR ERVL -272 192 1 4 1663 781 237 60 15 chr3 141333914 141334115 -18265668 - B3 SINE B2 -6 210 1 4 1663 273 57 0 0 chr3 141334710 141334745 -18265038 + (TA)n Simple_repeat Simple_repeat 2 36 0 4 1663 416 316 43 17 chr3 141337342 141337458 -18262325 + B3A SINE B2 65 183 -15 4 1663 23 33 0 0 chr3 141337812 141337842 -18261941 + AT_rich Low_complexity Low_complexity 1 30 0 4 1663 416 274 62 31 chr3 141339448 141339576 -18260207 + LFSINE_Vert SINE SINE 74 205 -254 4 1663 782 286 19 5 chr3 141340387 141340594 -18259189 - B3 SINE B2 -6 210 1 4 1663 438 20 0 0 chr3 141342507 141342558 -18257225 + (CA)n Simple_repeat Simple_repeat 2 52 0 4 1663 254 270 27 0 chr3 141343058 141343132 -18256651 - ID4 SINE ID -4 79 4 4 1663 380 114 43 0 chr3 141343626 141343696 -18256087 + (CACCAT)n Simple_repeat Simple_repeat 6 78 0 4 1663 231 36 0 0 chr3 141344257 141344285 -18255498 + (TTG)n Simple_repeat Simple_repeat 2 29 0 4 1663 552 269 36 8 chr3 141345148 141345291 -18254492 + B1F SINE Alu 2 149 0 4 1663 637 227 168 0 chr3 141345593 141345778 -18254005 - B3 SINE B2 0 216 1 4 1663 263 329 81 46 chr3 141346062 141346259 -18253524 - MIRb SINE MIR -33 235 31 4 1663 1053 150 0 0 chr3 141346411 141346591 -18253192 + (GGGA)n Simple_repeat Simple_repeat 1 180 0 4 1663 1193 91 11 0 chr3 141346601 141346777 -18253006 + (GAAA)n Simple_repeat Simple_repeat 3 180 0 4 1663 6700 114 72 20 chr3 141346924 141348035 -18251748 - Lx2 LINE L1 -1 6996 5828 4 1663 246 426 14 29 chr3 141348575 141348715 -18251068 + RSINE1 SINE B4 26 163 -2 4 1663 261 0 0 0 chr3 141348946 141348975 -18250808 + (TA)n Simple_repeat Simple_repeat 1 29 0 4 1663 22 35 0 0 chr3 141349019 141349048 -18250735 + AT_rich Low_complexity Low_complexity 1 29 0 4 1663 424 273 121 0 chr3 141349111 141349243 -18250540 - MLT1A0 LTR MaLR 0 365 218 4 1663 1233 103 21 32 chr3 141349910 141350100 -18249683 + B2_Mm2 SINE B2 1 188 -7 4 1663 206 163 23 0 chr3 141350451 141350494 -18249289 + (TCTA)n Simple_repeat Simple_repeat 3 46 0 4 1663 21 0 0 0 chr3 141350808 141350829 -18248954 + AT_rich Low_complexity Low_complexity 1 21 0 4 1663 227 283 0 0 chr3 141352058 141352118 -18247665 + (TATATG)n Simple_repeat Simple_repeat 4 63 0 4 1663 527 286 175 47 chr3 141352579 141352836 -18246947 + B4 SINE B4 1 290 -2 4 1663 735 119 0 0 chr3 141352846 141352972 -18246811 + (TA)n Simple_repeat Simple_repeat 1 126 0 4 1663 378 0 0 0 chr3 141352972 141353014 -18246769 + (TG)n Simple_repeat Simple_repeat 1 42 0 4 1663 226 282 101 13 chr3 141353805 141353884 -18245899 - MLT1D LTR MaLR -18 487 402 4 1663 260 312 25 67 chr3 141353969 141354089 -18245694 - MLT1D LTR MaLR -258 247 133 4 1663 518 137 0 10 chr3 141354806 141354902 -18244881 + (CA)n Simple_repeat Simple_repeat 1 95 0 4 1663 513 135 0 0 chr3 141356625 141356714 -18243069 + (CATA)n Simple_repeat Simple_repeat 2 90 0 4 1663 189 214 0 0 chr3 141357096 141357138 -18242645 + (CATA)n Simple_repeat Simple_repeat 3 44 0 4 1663 207 325 145 39 chr3 141357782 141357961 -18241822 - MIRb SINE MIR -44 224 27 4 1663 4436 244 104 29 chr3 141360336 141360948 -18238835 - Lx6 LINE L1 -3 7457 6788 4 1663 620 197 204 42 chr3 141360948 141361139 -18238644 + URR1A DNA MER1_type 5 226 0 4 1663 4436 244 104 29 chr3 141361139 141361803 -18237980 - Lx6 LINE L1 -673 6787 6085 4 1663 694 229 68 84 chr3 141361915 141362297 -18237486 - L1M2 LINE L1 -671 5629 5254 4 1663 2814 290 97 17 chr3 141362565 141363086 -18236697 - L1M2 LINE L1 -1242 4901 4308 4 1663 291 93 0 0 chr3 141363086 141363129 -18236654 + (TG)n Simple_repeat Simple_repeat 2 44 0 4 1663 2814 290 97 17 chr3 141363129 141363984 -18235799 - L1M2 LINE L1 -1836 4307 3416 4 1663 1741 294 84 24 chr3 141364783 141365837 -18233946 - Lx8 LINE L1 -875 6598 5425 4 1663 329 128 0 0 chr3 141365838 141365885 -18233898 - ORR1A2 LTR MaLR -8 386 340 4 1663 24944 75 18 3 chr3 141365885 141369987 -18229796 - L1Md_F2 LINE L1 -14 6568 2398 4 1663 523 108 238 1 chr3 141369987 141370090 -18229693 - ORR1A2 LTR MaLR -197 149 1 4 1663 1559 313 34 29 chr3 141370204 141370656 -18229127 - Lx8 LINE L1 -625 5255 4793 4 1663 2712 18 2 208 chr3 141370656 141371147 -18228636 + RLTR10 LTR ERVK 1 390 0 4 1663 1559 313 34 29 chr3 141371147 141371490 -18228293 - Lx8 LINE L1 -1088 4792 4456 4 1663 3666 215 109 38 chr3 141371512 141372522 -18227261 - Lx7 LINE L1 0 7696 6615 4 1663 431 315 121 51 chr3 141372587 141372958 -18226825 + RMER20B LTR ERVK 4 400 -227 4 1663 1616 274 33 17 chr3 141373100 141373683 -18226100 - Lx8 LINE L1 -1517 4363 3772 4 1663 21 0 0 0 chr3 141375447 141375468 -18224315 + AT_rich Low_complexity Low_complexity 1 21 0 4 1663 447 370 21 21 chr3 141375968 141376156 -18223627 - MER5A DNA MER1_type 0 189 2 4 1663 333 0 0 0 chr3 141377156 141377193 -18222590 + (TTTTA)n Simple_repeat Simple_repeat 2 38 0 4 1663 183 49 48 24 chr3 141378019 141378061 -18221722 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 4 1663 1259 279 11 37 chr3 141378792 141379171 -18220612 - MLT1B LTR MaLR -21 369 1 4 1663 204 341 94 22 chr3 141380182 141380320 -18219463 + L2a LINE L2 3274 3421 -5 4 1663 542 322 94 8 chr3 141382043 141382278 -18217505 + MIRb SINE MIR 5 259 -9 4 1663 291 312 106 82 chr3 141382823 141383116 -18216667 - MER33 DNA MER1_type -1 323 24 4 1663 247 45 22 43 chr3 141383174 141383220 -18216563 + (TATATG)n Simple_repeat Simple_repeat 6 50 0 4 1663 1081 97 7 0 chr3 141385705 141385850 -18213933 + B1_Mm SINE Alu 2 147 0 4 1663 224 0 65 0 chr3 141385861 141385892 -18213891 + (CAAAAA)n Simple_repeat Simple_repeat 4 36 0 4 1663 286 324 28 9 chr3 141387151 141387260 -18212523 - MIR SINE MIR -42 220 110 4 1663 363 289 36 29 chr3 141388028 141388167 -18211616 + B1F SINE Alu 1 140 -9 4 1663 182 317 122 0 chr3 141389277 141389359 -18210424 + L3 LINE CR1 1616 1707 -2782 4 1663 354 80 0 0 chr3 141390236 141390286 -18209497 + (TA)n Simple_repeat Simple_repeat 2 51 0 4 1663 25 83 0 0 chr3 141391631 141391691 -18208092 + AT_rich Low_complexity Low_complexity 1 60 0 4 1663 1495 189 144 10 chr3 141391710 141391832 -18207951 - Lx9 LINE L1 0 7644 7502 4 1663 264 30 0 0 chr3 141391832 141391865 -18207918 + (TC)n Simple_repeat Simple_repeat 2 34 0 4 1663 330 67 0 0 chr3 141391865 141391909 -18207874 + (TG)n Simple_repeat Simple_repeat 2 46 0 4 1663 1495 189 144 10 chr3 141391909 141392181 -18207602 - Lx9 LINE L1 -143 7501 7197 4 1663 327 342 62 10 chr3 141393890 141394085 -18205698 + MER20 DNA MER1_type 2 206 -13 4 1663 2840 42 11 8 chr3 141395136 141395497 -18204286 - L1Md_F3 LINE L1 -2 6582 6221 4 1663 1019 266 40 114 chr3 141399913 141400291 -18199492 - ORR1E LTR MaLR -6 353 4 4 1663 1642 166 135 58 chr3 141401170 141401534 -18198249 - ORR1B1 LTR MaLR -2 392 1 4 1663 5299 77 13 1 chr3 141401776 141402490 -18197293 - L1_Mus4 LINE L1 -6 6630 5909 4 1663 219 385 33 0 chr3 141403909 141404031 -18195752 - L2b LINE L2 -220 3155 3030 4 1663 198 0 0 0 chr3 141405520 141405542 -18194241 + (TTTG)n Simple_repeat Simple_repeat 1 22 0 4 1663 252 86 0 0 chr3 141406025 141406060 -18193723 + (TAA)n Simple_repeat Simple_repeat 1 35 0 4 1663 3072 58 5 2 chr3 141407955 141408350 -18191433 + MTA_Mm LTR MaLR 1 396 0 4 1663 289 362 26 19 chr3 141409010 141409165 -18190618 - RSINE1 SINE B4 -8 157 2 4 1663 220 377 55 18 chr3 141410032 141410197 -18189586 + MER5B DNA MER1_type 8 178 0 4 1663 185 132 26 0 chr3 141411168 141411206 -18188577 + (TA)n Simple_repeat Simple_repeat 1 39 0 4 1663 233 329 102 27 chr3 141411662 141411809 -18187974 - MIR SINE MIR -64 198 41 4 1663 227 192 0 0 chr3 141412401 141412453 -18187330 + (TA)n Simple_repeat Simple_repeat 1 52 0 5 1663 24 0 0 0 chr3 141412674 141412698 -18187085 + AT_rich Low_complexity Low_complexity 1 24 0 5 1663 368 285 168 5 chr3 141413299 141413489 -18186294 - ID_B1 SINE B4 -1 223 3 5 1663 264 265 0 68 chr3 141413533 141413606 -18186177 - ID4_ SINE ID -3 80 13 5 1663 386 322 0 11 chr3 141414213 141414307 -18185476 + PB1D10 SINE Alu 1 93 -24 5 1663 4606 120 86 89 chr3 141414615 141415520 -18184263 + RMER17A2 LTR ERVK 1 902 -4 5 1663 225 282 64 0 chr3 141417460 141417538 -18182245 - L2 LINE L2 -2547 872 790 5 1663 1681 171 42 28 chr3 141418814 141419175 -18180608 - ORR1B2 LTR MaLR -1 366 1 5 1663 611 302 61 11 chr3 141420154 141420415 -18179368 + MER121 Unknown Unknown 139 412 0 5 1663 308 326 65 29 chr3 141421833 141421972 -18177811 + MER34 LTR ERV1 3 146 -396 5 1663 281 395 54 14 chr3 141422045 141422268 -18177515 + MER34 LTR ERV1 311 542 0 5 207 37890 31 0 0 chr3 141422920 141429578 -18170205 - L1Md_T LINE L1 0 6585 1 5 1664 666 85 0 0 chr3 141430553 141430647 -18169136 + (TA)n Simple_repeat Simple_repeat 2 95 0 5 1664 480 139 0 0 chr3 141432946 141433025 -18166758 + (TA)n Simple_repeat Simple_repeat 2 80 0 5 1664 396 116 0 16 chr3 141436770 141436892 -18162891 + (CAGA)n Simple_repeat Simple_repeat 1 120 0 5 1664 308 306 61 30 chr3 141437579 141437744 -18162039 + L1MEg LINE L1 783 952 -5132 5 1664 275 337 35 11 chr3 141438557 141438644 -18161139 + B4A SINE B4 196 284 -8 5 1664 390 57 0 0 chr3 141438669 141438722 -18161061 + (TC)n Simple_repeat Simple_repeat 2 54 0 5 1664 270 0 0 0 chr3 141438722 141438752 -18161031 + (CA)n Simple_repeat Simple_repeat 1 30 0 5 1664 1000 266 123 39 chr3 141439032 141439463 -18160320 - Lx8 LINE L1 -5 7468 7002 5 1664 243 0 0 0 chr3 141442864 141442891 -18156892 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 5 1664 372 262 0 67 chr3 141443001 141443091 -18156692 + B1F SINE Alu 66 149 0 5 1664 183 333 75 38 chr3 141443691 141443797 -18155986 - MIRc SINE MIR -121 147 38 5 1664 364 345 95 0 chr3 141443871 141444019 -18155764 + B4A SINE B4 35 196 -96 5 1664 333 213 53 0 chr3 141444164 141444239 -18155544 - MTEb LTR MaLR -300 79 1 5 1664 378 338 54 78 chr3 141444946 141445113 -18154670 + RSINE1 SINE B4 3 165 0 5 1664 252 356 22 0 chr3 141445366 141445456 -18154327 - MER20B DNA MER1_type -628 155 64 5 1664 229 308 40 64 chr3 141445937 141446062 -18153721 - MIRb SINE MIR -138 130 9 5 1664 217 231 0 0 chr3 141446906 141446945 -18152838 + (ATG)n Simple_repeat Simple_repeat 3 41 0 5 1664 740 272 50 30 chr3 141446945 141447146 -18152637 - ID_B1 SINE B4 -9 215 11 5 1664 2585 109 5 82 chr3 141447363 141447803 -18151980 - Lx LINE L1 -6 6648 6243 5 1664 212 347 0 0 chr3 141449692 141449816 -18149967 + T-rich Low_complexity Low_complexity 1 124 0 5 1664 204 158 0 0 chr3 141450929 141450967 -18148816 + T-rich Low_complexity Low_complexity 1 38 0 5 1664 898 93 108 0 chr3 141453408 141453537 -18146246 + B1_Mus1 SINE Alu 1 143 -5 5 1664 593 90 11 0 chr3 141453537 141453626 -18146157 + (GAAA)n Simple_repeat Simple_repeat 3 92 0 5 1664 371 113 16 0 chr3 141453964 141454026 -18145757 + (CA)n Simple_repeat Simple_repeat 2 64 0 5 1664 250 274 0 21 chr3 141455230 141455327 -18144456 + (CAGCC)n Simple_repeat Simple_repeat 3 97 0 5 1664 513 32 0 0 chr3 141455614 141455677 -18144106 + (TG)n Simple_repeat Simple_repeat 2 64 0 5 1664 342 91 0 0 chr3 141455689 141455744 -18144039 + (TCTG)n Simple_repeat Simple_repeat 4 58 0 5 1664 234 91 0 0 chr3 141456126 141456159 -18143624 + (GAAA)n Simple_repeat Simple_repeat 2 34 0 5 1664 1017 36 0 7 chr3 141456279 141456417 -18143366 - L1Md_F2 LINE L1 -4 6578 6442 5 1664 402 320 57 75 chr3 141458227 141458507 -18141276 - B4A SINE B4 -16 276 2 5 1664 289 171 17 25 chr3 141459023 141459143 -18140640 + (TA)n Simple_repeat Simple_repeat 2 120 0 5 1664 297 354 18 0 chr3 141459278 141459391 -18140392 + PB1D10 SINE Alu 1 115 -2 5 1664 381 309 168 19 chr3 141459637 141459851 -18139932 - L4 LINE RTE -534 1495 1250 5 1664 289 367 125 52 chr3 141461674 141462019 -18137764 - LTR40b LTR ERVL -7 455 86 5 1664 228 398 73 27 chr3 141462265 141462526 -18137257 + L3 LINE CR1 3381 3653 -836 5 1664 183 80 0 0 chr3 141463512 141463537 -18136246 + (GA)n Simple_repeat Simple_repeat 1 25 0 5 1664 411 132 0 0 chr3 141463531 141463599 -18136184 + (GGAA)n Simple_repeat Simple_repeat 4 71 0 5 1664 618 367 43 17 chr3 141468061 141468413 -18131370 - MLT1A0 LTR MaLR -4 361 1 5 1664 263 275 110 22 chr3 141468739 141468877 -18130906 - MIRb SINE MIR -67 201 50 5 1664 22 56 0 0 chr3 141471639 141471675 -18128108 + AT_rich Low_complexity Low_complexity 1 36 0 5 1664 228 318 45 36 chr3 141473413 141473524 -18126259 + MLT1E3 LTR MaLR 213 324 -300 5 1664 746 152 14 55 chr3 141476384 141476530 -18123253 - B1_Mur2 SINE Alu -5 144 5 5 1664 683 39 39 0 chr3 141476994 141477097 -18122686 + (GA)n Simple_repeat Simple_repeat 1 107 0 5 1664 198 0 0 0 chr3 141477133 141477155 -18122628 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 5 1664 621 337 126 4 chr3 141478941 141479188 -18120595 + B4 SINE B4 15 291 -1 5 1664 22 35 0 0 chr3 141480086 141480115 -18119668 + AT_rich Low_complexity Low_complexity 1 29 0 5 1664 232 245 83 93 chr3 141480611 141480719 -18119064 - RMER13B LTR ERVK -574 334 228 5 1664 247 345 41 3 chr3 141480748 141480877 -18118906 + MIR SINE MIR 15 146 -62 5 1664 281 373 102 16 chr3 141481366 141481494 -18118289 + B1F1 SINE Alu 1 139 -10 5 1664 357 258 53 11 chr3 141483771 141483865 -18115918 + B3A SINE B2 11 108 -90 5 1664 483 167 24 0 chr3 141483856 141483940 -18115843 + B1_Mus2 SINE Alu 62 147 0 5 1664 549 0 0 0 chr3 141483990 141484051 -18115732 + (GGAA)n Simple_repeat Simple_repeat 4 64 0 5 1664 1667 282 135 26 chr3 141485209 141487321 -18112462 + L1MA4 LINE L1 3549 5891 -409 5 1664 774 20 0 10 chr3 141487322 141487422 -18112361 - L1Md_F2 LINE L1 -226 6356 6258 5 1664 1353 72 23 42 chr3 141487422 141487639 -18112144 + L1Md_F2 LINE L1 6369 6581 -1 5 1664 449 279 128 124 chr3 141487864 141488154 -18111629 + B4 SINE B4 2 292 0 5 1664 438 20 0 0 chr3 141488170 141488221 -18111562 + (CA)n Simple_repeat Simple_repeat 1 51 0 5 1664 228 67 0 0 chr3 141488274 141488304 -18111479 + (TGAA)n Simple_repeat Simple_repeat 1 30 0 5 1664 295 180 0 16 chr3 141490026 141490088 -18109695 - URR1B DNA MER1_type -55 170 110 5 1664 21 36 0 0 chr3 141492304 141492332 -18107451 + AT_rich Low_complexity Low_complexity 1 28 0 5 1664 365 331 41 24 chr3 141492638 141492808 -18106975 + MIR3 SINE MIR 3 175 -33 5 1664 297 376 0 0 chr3 141494745 141494838 -18104945 - PB1D10 SINE Alu -21 96 4 5 1664 21 0 0 0 chr3 141495839 141495860 -18103923 + AT_rich Low_complexity Low_complexity 1 21 0 5 1664 255 61 0 0 chr3 141497274 141497307 -18102476 + (TG)n Simple_repeat Simple_repeat 2 34 0 5 1664 216 0 0 0 chr3 141497429 141497453 -18102330 + (A)n Simple_repeat Simple_repeat 1 24 0 5 1664 202 229 0 20 chr3 141500840 141500889 -18098894 + (CATATA)n Simple_repeat Simple_repeat 4 51 0 1 1664 23 33 0 0 chr3 141501040 141501070 -18098713 + AT_rich Low_complexity Low_complexity 1 30 0 2 1664 22 35 0 0 chr3 141501168 141501197 -18098586 + AT_rich Low_complexity Low_complexity 1 29 0 3 1664 217 197 26 0 chr3 141504676 141504752 -18095031 + (TA)n Simple_repeat Simple_repeat 1 78 0 4 1664 325 103 34 17 chr3 141504765 141504824 -18094959 - Lx9 LINE L1 -247 7397 7338 5 1664 515 217 139 14 chr3 141504822 141504909 -18094874 + Lx9 LINE L1 7403 7489 -155 6 1664 456 51 0 0 chr3 141504909 141504968 -18094815 + (TG)n Simple_repeat Simple_repeat 2 60 0 7 1664 515 217 139 14 chr3 141504968 141505095 -18094688 + Lx9 LINE L1 7490 7643 -1 6 1664 478 257 119 57 chr3 141505116 141505293 -18094490 - B3A SINE B2 -10 188 1 8 1664 198 115 58 0 chr3 141505439 141505491 -18094292 + (CAAA)n Simple_repeat Simple_repeat 2 56 0 9 1664 282 348 40 74 chr3 141506720 141506869 -18092914 + ID_B1 SINE B4 72 215 -9 1 1664 388 311 36 36 chr3 141506740 141506877 -18092906 + B1F SINE Alu 10 146 -3 1 1664 525 71 0 0 chr3 141507516 141507586 -18092197 + (GGAA)n Simple_repeat Simple_repeat 3 72 0 1 1664 310 338 113 13 chr3 141508471 141508630 -18091153 + B4A SINE B4 79 253 -39 1 1664 28 0 0 0 chr3 141508771 141508799 -18090984 + AT_rich Low_complexity Low_complexity 1 28 0 1 1664 494 124 11 0 chr3 141509759 141509848 -18089935 + (AGATG)n Simple_repeat Simple_repeat 1 90 0 1 1664 986 229 124 8 chr3 141509856 141510087 -18089696 + Lx9 LINE L1 7232 7488 -156 1 1664 3488 18 5 0 chr3 141510087 141510481 -18089302 - MTA_Mm LTR MaLR 0 396 1 1 1664 986 229 124 8 chr3 141510481 141510619 -18089164 + Lx9 LINE L1 7489 7644 0 1 1664 24 0 0 0 chr3 141511187 141511211 -18088572 + AT_rich Low_complexity Low_complexity 1 24 0 1 1664 1155 211 52 24 chr3 141511671 141511919 -18087864 - RMER5 LTR ERV1 0 534 280 1 1664 227 97 0 0 chr3 141512368 141512399 -18087384 - Lx3C LINE L1 -508 6468 6438 2 1664 1529 125 35 46 chr3 141512415 141512700 -18087083 + Lx3B LINE L1 6689 6970 -3 2 1664 21 0 0 0 chr3 141512708 141512729 -18087054 + AT_rich Low_complexity Low_complexity 1 21 0 2 1664 1997 247 23 92 chr3 141513186 141513842 -18085941 + RMER19C LTR ERVK 1 611 0 2 1664 423 279 25 59 chr3 141514840 141514958 -18084825 + MTEa LTR MaLR 1 114 -265 2 1664 507 222 43 36 chr3 141518114 141518254 -18081529 + RMER30 DNA MER1_type 7 147 -55 2 1664 1547 226 59 32 chr3 141518640 141519047 -18080736 - MTD LTR MaLR 0 419 2 2 1664 429 20 0 0 chr3 141519768 141519818 -18079965 + (TA)n Simple_repeat Simple_repeat 2 51 0 2 1664 801 185 0 20 chr3 141521035 141521184 -18078599 + B1_Mur3 SINE Alu 3 148 -1 2 1664 304 106 35 23 chr3 141521187 141521274 -18078509 + A-rich Low_complexity Low_complexity 1 88 0 2 1664 24 0 0 0 chr3 141521621 141521645 -18078138 + AT_rich Low_complexity Low_complexity 1 24 0 3 1664 181 256 84 60 chr3 141522430 141522513 -18077270 - MIR SINE MIR -80 182 98 3 1664 473 340 33 40 chr3 141523234 141523384 -18076399 - RSINE1 SINE B4 -14 151 3 3 1664 1113 259 57 17 chr3 141523611 141523964 -18075819 + Lx7 LINE L1 6993 7359 -337 3 1664 25 51 0 0 chr3 141524121 141524160 -18075623 + AT_rich Low_complexity Low_complexity 1 39 0 3 1664 180 311 0 0 chr3 141524552 141524597 -18075186 + L2c LINE L2 3277 3321 -66 3 1664 759 194 198 11 chr3 141526397 141526579 -18073204 + B3 SINE B2 1 216 0 3 1664 24 0 0 0 chr3 141526941 141526965 -18072818 + AT_rich Low_complexity Low_complexity 1 24 0 3 1664 1292 88 27 11 chr3 141527145 141527328 -18072455 + B2_Mm1t SINE B2 2 187 -6 3 1664 29 0 0 0 chr3 141529215 141529244 -18070539 + AT_rich Low_complexity Low_complexity 1 29 0 3 1664 518 271 27 20 chr3 141530852 141530999 -18068784 + ORR1E LTR MaLR 232 379 0 4 1664 3411 297 76 56 chr3 141530999 141532339 -18067444 + ORR1E-int LTR MaLR 1 1367 -3 4 1664 644 276 41 12 chr3 141532348 141532517 -18067266 + ORR1E LTR MaLR 9 182 -177 4 1664 441 0 0 0 chr3 141532521 141532570 -18067213 + (TC)n Simple_repeat Simple_repeat 2 50 0 4 1664 342 0 0 0 chr3 141532570 141532607 -18067176 + (TG)n Simple_repeat Simple_repeat 1 38 0 4 1664 331 217 23 46 chr3 141532607 141532694 -18067089 + ORR1E LTR MaLR 295 379 0 4 1664 186 118 0 0 chr3 141534485 141534519 -18065264 + (T)n Simple_repeat Simple_repeat 1 34 0 4 1664 215 370 0 37 chr3 141534731 141534865 -18064918 - MIRc SINE MIR -98 170 45 4 1664 498 322 33 19 chr3 141536263 141536475 -18063308 + B3 SINE B2 1 215 -1 4 1664 291 161 0 0 chr3 141536475 141536531 -18063252 + (TATG)n Simple_repeat Simple_repeat 1 56 0 4 1664 545 239 9 0 chr3 141539131 141539240 -18060543 + B1_Mur1 SINE Alu 31 140 -9 4 1664 279 226 0 36 chr3 141539258 141539368 -18060415 + GA-rich Low_complexity Low_complexity 1 106 0 4 1664 359 310 11 0 chr3 141539965 141540052 -18059731 - B1_Mur3 SINE Alu -61 88 1 4 1664 280 290 147 43 chr3 141540393 141540577 -18059206 + MER5C DNA MER1_type 42 244 -69 5 1664 390 258 98 30 chr3 141540674 141540707 -18059076 + CYRA11_Mm Unknown Y-chromosome 136 179 -438 5 1664 850 139 49 25 chr3 141540707 141540869 -18058914 - URR1B DNA MER1_type 0 225 60 5 1664 513 0 0 0 chr3 141541915 141541972 -18057811 + (TC)n Simple_repeat Simple_repeat 2 58 0 5 1664 1150 88 0 0 chr3 141541987 141542134 -18057649 - B1_Mus1 SINE Alu 0 148 2 5 1664 1381 244 120 14 chr3 141543804 141544170 -18055613 - MTD LTR MaLR -14 405 1 5 1664 560 318 39 0 chr3 141544785 141544939 -18054844 + B4 SINE B4 7 166 -126 5 1664 313 404 59 41 chr3 141545506 141545777 -18054006 + HAL1 LINE L1 657 932 -1575 5 1664 489 224 20 0 chr3 141546124 141546222 -18053561 + B3 SINE B2 1 100 -116 5 1664 1819 172 91 6 chr3 141546231 141546571 -18053212 - MTC LTR MaLR -50 371 3 5 1664 1088 45 0 36 chr3 141546712 141546851 -18052932 + B1_Mm SINE Alu 2 135 -12 6 1664 360 0 0 0 chr3 141546852 141546892 -18052891 + (CAAAA)n Simple_repeat Simple_repeat 2 41 0 6 1664 24 53 0 0 chr3 141546899 141546937 -18052846 + AT_rich Low_complexity Low_complexity 1 38 0 6 1664 226 268 82 0 chr3 141547048 141547145 -18052638 + HAL1 LINE L1 1600 1704 -803 5 1664 582 286 28 7 chr3 141548092 141548233 -18051550 - B1F SINE Alu -5 144 1 6 1664 1148 122 44 0 chr3 141548390 141548570 -18051213 - B2_Mm2 SINE B2 -6 189 2 6 1664 1836 40 0 9 chr3 141548637 141548863 -18050920 - L1Md_F3 LINE L1 -14 6570 6347 6 1664 2319 22 0 0 chr3 141548863 141549141 -18050642 + L1Md_F3 LINE L1 6043 6320 -264 6 1664 25 65 0 0 chr3 141549141 141549187 -18050596 + AT_rich Low_complexity Low_complexity 1 46 0 6 1664 232 250 12 59 chr3 141550477 141550562 -18049221 - Lx9 LINE L1 -298 7346 7266 6 1664 452 314 88 19 chr3 141552733 141552892 -18046891 + ID_B1 SINE B4 3 172 -52 6 1664 993 113 0 18 chr3 141552892 141553063 -18046720 + (GAAA)n Simple_repeat Simple_repeat 4 171 0 6 1664 221 203 0 45 chr3 141553966 141554016 -18045767 + GA-rich Low_complexity Low_complexity 2 49 0 7 1664 1000 102 11 22 chr3 141554016 141554197 -18045586 + (GGGA)n Simple_repeat Simple_repeat 2 180 0 7 1664 221 203 0 45 chr3 141554197 141554213 -18045570 + polypurine Low_complexity Low_complexity 50 65 0 7 1664 804 39 0 0 chr3 141554213 141554317 -18045466 + (CAGAGA)n Simple_repeat Simple_repeat 3 106 0 7 1664 1073 51 65 0 chr3 141554973 141555111 -18044672 - B1_Mm SINE Alu 0 147 1 7 1664 748 176 309 0 chr3 141555248 141555413 -18044370 + B3 SINE B2 1 216 0 7 1664 206 220 0 33 chr3 141555414 141555475 -18044308 + A-rich Low_complexity Low_complexity 2 60 0 7 1664 184 122 49 0 chr3 141555542 141555583 -18044200 + (TA)n Simple_repeat Simple_repeat 2 44 0 7 1664 1128 107 0 0 chr3 141556075 141556306 -18043477 + (CCA)n Simple_repeat Simple_repeat 1 231 0 7 1664 624 306 0 0 chr3 141556636 141556783 -18043000 - B1F SINE Alu 0 149 3 7 1664 509 274 97 63 chr3 141557358 141557627 -18042156 + B4 SINE B4 1 278 -14 8 1665 25 31 0 0 chr3 141559211 141559243 -18040540 + AT_rich Low_complexity Low_complexity 1 32 0 8 1665 216 242 0 0 chr3 141559692 141559754 -18040029 + (TG)n Simple_repeat Simple_repeat 2 63 0 8 1665 233 339 0 0 chr3 141561803 141561868 -18037915 + ID4_ SINE ID 2 66 -17 8 1665 756 308 92 8 chr3 141562000 141562249 -18037534 - B4A SINE B4 -21 271 2 8 1665 438 285 218 42 chr3 141562250 141562712 -18037071 - Charlie1a DNA MER1_type -802 653 111 8 1665 267 54 0 0 chr3 141563084 141563121 -18036662 + (T)n Simple_repeat Simple_repeat 1 37 0 8 1665 550 319 18 71 chr3 141563121 141563347 -18036436 - B4A SINE B4 -68 224 11 8 1665 824 238 43 19 chr3 141563387 141563597 -18036186 + B3 SINE B2 1 215 -1 8 1665 245 373 52 26 chr3 141564787 141564941 -18034842 + MIRb SINE MIR 103 260 -8 8 1665 924 268 58 11 chr3 141565307 141565568 -18034215 + B4A SINE B4 2 274 -18 9 1665 276 228 0 0 chr3 141565576 141565690 -18034093 + GA-rich Low_complexity Low_complexity 1 114 0 9 1665 35 0 0 0 chr3 141566398 141566433 -18033350 + AT_rich Low_complexity Low_complexity 1 35 0 9 1665 21 36 0 0 chr3 141568419 141568447 -18031336 + AT_rich Low_complexity Low_complexity 1 28 0 9 1665 269 313 0 12 chr3 141570568 141570652 -18029131 + CT-rich Low_complexity Low_complexity 1 83 0 9 1665 550 203 97 8 chr3 141570816 141570940 -18028843 + ID_B1 SINE B4 89 223 -1 9 1665 231 250 0 0 chr3 141570941 141570985 -18028798 + polypurine Low_complexity Low_complexity 1 44 0 9 1665 328 296 10 0 chr3 141571565 141571663 -18028120 + (TG)n Simple_repeat Simple_repeat 2 100 0 9 1665 399 132 0 0 chr3 141571728 141571796 -18027987 + (TG)n Simple_repeat Simple_repeat 2 69 0 9 1665 280 282 33 66 chr3 141571818 141571909 -18027874 - B4A SINE B4 -5 287 200 9 1665 363 282 65 51 chr3 141571891 141572029 -18027754 + B4A SINE B4 55 194 -98 1 1665 900 45 0 182 chr3 141571938 141572103 -18027680 + B1_Mus2 SINE Alu 13 147 0 1 1665 323 239 15 15 chr3 141572243 141572311 -18027472 - B4A SINE B4 -59 233 166 1 1665 554 309 0 0 chr3 141572530 141572653 -18027130 + RSINE1 SINE B4 3 125 -40 1 1665 21 36 0 0 chr3 141574097 141574125 -18025658 + AT_rich Low_complexity Low_complexity 1 28 0 1 1665 557 335 56 39 chr3 141574298 141574531 -18025252 - B4A SINE B4 -45 247 11 1 1665 371 317 7 84 chr3 141574628 141574783 -18025000 + RSINE1 SINE B4 19 161 -4 1 1665 195 42 0 0 chr3 141574809 141574833 -18024950 + (TAA)n Simple_repeat Simple_repeat 1 24 0 1 1665 29 28 0 0 chr3 141574842 141574878 -18024905 + AT_rich Low_complexity Low_complexity 1 36 0 1 1665 334 243 155 14 chr3 141574915 141575057 -18024726 + MLT2B4 LTR ERVL 385 546 -10 1 1665 279 319 23 114 chr3 141576305 141576436 -18023347 - PB1D10 SINE Alu -1 119 1 1 1665 738 0 0 0 chr3 141576870 141576952 -18022831 + (GGGAA)n Simple_repeat Simple_repeat 5 86 0 1 1665 402 57 0 0 chr3 141577337 141577390 -18022393 + (CAAG)n Simple_repeat Simple_repeat 2 54 0 1 1665 286 317 39 31 chr3 141577456 141577583 -18022200 - LTR16E2 LTR ERVL 0 568 441 1 1665 234 270 101 0 chr3 141577960 141578049 -18021734 - L2 LINE L2 -830 2589 2492 1 1665 266 0 29 0 chr3 141578894 141578928 -18020855 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 1 1665 253 280 127 70 chr3 141579991 141580133 -18019650 - MER5A DNA MER1_type -2 187 38 1 1665 290 265 79 0 chr3 141581172 141581291 -18018492 - L1M4 LINE L1 -404 5774 5645 1 1665 324 325 42 89 chr3 141581300 141581513 -18018270 - L1M4 LINE L1 -676 5498 5296 1 1665 294 95 0 0 chr3 141581559 141581601 -18018182 + (T)n Simple_repeat Simple_repeat 1 42 0 1 1665 299 230 61 38 chr3 141581601 141581732 -18018051 - L1M4 LINE L1 -922 5224 5091 1 1665 265 302 109 0 chr3 141582255 141582389 -18017394 + MIRb SINE MIR 14 159 -103 1 1665 210 37 0 0 chr3 141583464 141583491 -18016292 + (TTGG)n Simple_repeat Simple_repeat 2 28 0 1 1665 623 210 29 0 chr3 141583564 141583702 -18016081 - RMER1C Other Other -1 1341 1200 1 1665 458 83 0 14 chr3 141583708 141583781 -18016002 + (GGA)n Simple_repeat Simple_repeat 2 73 0 1 1665 729 193 84 11 chr3 141583781 141583959 -18015824 - RMER1C Other Other -151 1191 1001 1 1665 201 329 0 0 chr3 141585044 141585117 -18014666 + (TA)n Simple_repeat Simple_repeat 2 74 0 1 1665 240 35 0 0 chr3 141585119 141585148 -18014635 + (TG)n Simple_repeat Simple_repeat 2 30 0 1 1665 742 174 144 0 chr3 141585160 141585327 -18014456 - RMER1C Other Other -152 1190 1000 1 1665 725 102 0 14 chr3 141585366 141585506 -18014277 + (TCTCTG)n Simple_repeat Simple_repeat 6 143 0 1 1665 333 0 0 0 chr3 141585506 141585543 -18014240 + (TG)n Simple_repeat Simple_repeat 1 37 0 1 1665 251 71 24 0 chr3 141585734 141585776 -18014007 + (CAAAA)n Simple_repeat Simple_repeat 3 45 0 1 1665 750 121 0 0 chr3 141586245 141586361 -18013422 + (TA)n Simple_repeat Simple_repeat 2 117 0 1 1665 818 49 90 14 chr3 141588230 141588374 -18011409 - L1_Mus3 LINE L1 0 6638 6484 1 1665 216 297 0 0 chr3 141589628 141589692 -18010091 + (TG)n Simple_repeat Simple_repeat 2 65 0 1 1665 780 286 39 21 chr3 141589695 141589977 -18009806 - B4 SINE B4 -4 288 2 1 1665 26 0 0 0 chr3 141590364 141590390 -18009393 + AT_rich Low_complexity Low_complexity 1 26 0 1 1665 452 318 102 5 chr3 141592637 141592833 -18006950 - MIR SINE MIR -41 221 7 1 1665 243 0 0 0 chr3 141594844 141594871 -18004912 + (A)n Simple_repeat Simple_repeat 1 27 0 1 1665 507 244 75 75 chr3 141595431 141595710 -18004073 + B4A SINE B4 2 280 -12 1 1665 189 107 0 0 chr3 141597497 141597525 -18002258 + (T)n Simple_repeat Simple_repeat 1 28 0 1 1665 351 0 0 0 chr3 141598190 141598229 -18001554 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 1665 228 179 0 0 chr3 141598460 141598499 -18001284 + B4A SINE B4 35 73 -219 1 1665 226 347 0 25 chr3 141598626 141598747 -18001036 + (CA)n Simple_repeat Simple_repeat 1 118 0 1 1665 22 0 0 0 chr3 141598750 141598772 -18001011 + AT_rich Low_complexity Low_complexity 1 22 0 1 1665 480 207 0 0 chr3 141600598 141600719 -17999064 + GA-rich Low_complexity Low_complexity 2 122 0 1 1665 507 33 0 0 chr3 141600989 141601050 -17998733 + (TC)n Simple_repeat Simple_repeat 2 62 0 1 1665 297 109 0 0 chr3 141601050 141601104 -17998679 + (TG)n Simple_repeat Simple_repeat 2 56 0 1 1665 223 329 104 40 chr3 141604702 141604924 -17994859 + L2a LINE L2 3057 3292 -134 1 1665 420 353 0 0 chr3 141605879 141606032 -17993751 + MLT1N2 LTR MaLR 402 554 -8 1 1665 1861 309 75 37 chr3 141607534 141607671 -17992112 - Lx9 LINE L1 -35 7609 7422 1 1665 471 35 0 0 chr3 141607671 141607728 -17992055 + (TG)n Simple_repeat Simple_repeat 2 58 0 1 1665 1861 309 75 37 chr3 141607728 141608628 -17991155 - Lx9 LINE L1 -223 7421 6534 1 1665 276 277 0 0 chr3 141608723 141608788 -17990995 + (TATATG)n Simple_repeat Simple_repeat 4 68 0 1 1665 23 0 0 0 chr3 141609170 141609193 -17990590 + AT_rich Low_complexity Low_complexity 1 23 0 1 1665 23 0 0 0 chr3 141609634 141609657 -17990126 + AT_rich Low_complexity Low_complexity 1 23 0 1 1665 1722 214 14 41 chr3 141611960 141612379 -17987404 - RCHARR1 DNA MER1_type 0 974 567 1 1665 947 290 93 24 chr3 141612383 141612800 -17986983 - RCHARR1 DNA MER1_type -526 448 3 1 1665 351 315 70 16 chr3 141613141 141613328 -17986455 + B3A SINE B2 2 198 0 1 1665 339 25 0 0 chr3 141614178 141614218 -17985565 + (TA)n Simple_repeat Simple_repeat 2 41 0 1 1665 21 71 0 0 chr3 141615011 141615053 -17984730 + AT_rich Low_complexity Low_complexity 1 42 0 1 1665 242 29 0 28 chr3 141615707 141615743 -17984040 + (TCTG)n Simple_repeat Simple_repeat 2 36 0 1 1665 333 0 0 0 chr3 141615753 141615790 -17983993 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 1665 24 0 0 0 chr3 141616507 141616531 -17983252 + AT_rich Low_complexity Low_complexity 1 24 0 1 1665 3447 213 32 12 chr3 141617737 141618621 -17981162 + RMER1A Other Other 1 1026 -4 1 1665 233 311 13 13 chr3 141618730 141618805 -17980978 + ID4 SINE ID 3 77 -6 1 1665 593 241 128 8 chr3 141618845 141619079 -17980704 + L1MB4 LINE L1 5869 6130 -50 1 1665 1525 209 37 43 chr3 141619492 141619637 -17980146 + L1_Mur2 LINE L1 883 1021 -6065 1 1665 297 0 0 0 chr3 141619637 141619670 -17980113 + (CA)n Simple_repeat Simple_repeat 2 34 0 1 1665 396 0 0 0 chr3 141619670 141619713 -17980070 + (GA)n Simple_repeat Simple_repeat 2 45 0 1 1665 16584 198 39 42 chr3 141619713 141619955 -17979828 + L1_Mur2 LINE L1 1022 1258 -4619 1 1665 387 0 0 0 chr3 141619955 141619998 -17979785 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 1665 16584 162 46 36 chr3 141619998 141623456 -17976327 + L1_Mur2 LINE L1 1259 4749 -1128 1 1665 219 36 0 0 chr3 141623456 141623484 -17976299 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 1 1665 16584 162 46 36 chr3 141623484 141623702 -17976081 + L1_Mur2 LINE L1 4750 4971 -906 1 1665 6390 175 12 35 chr3 141623702 141624977 -17974806 + Lx4B LINE L1 5806 7051 -7 1 1665 37 39 0 0 chr3 141625299 141625350 -17974433 + AT_rich Low_complexity Low_complexity 1 51 0 1 1665 960 57 0 0 chr3 141625419 141625542 -17974241 + (TC)n Simple_repeat Simple_repeat 2 124 0 1 1665 228 284 22 43 chr3 141625746 141625838 -17973945 + Zaphod DNA Tip100 2803 2892 -1139 1 1665 1294 323 86 69 chr3 141626299 141626707 -17973076 - Charlie1a DNA MER1_type -322 1133 721 1 1665 452 98 0 24 chr3 141626707 141626791 -17972992 + Lx LINE L1 6572 6653 -1 1 1665 705 158 64 7 chr3 141626800 141626940 -17972843 + B1_Mus1 SINE Alu 1 148 0 1 1665 1294 323 86 69 chr3 141626940 141627295 -17972488 - Charlie1a DNA MER1_type -741 714 340 1 1665 2176 45 0 4 chr3 141627295 141627566 -17972217 + L1Md_T LINE L1 6313 6582 0 1 1665 1294 323 86 69 chr3 141627566 141627902 -17971881 - Charlie1a DNA MER1_type -1116 339 6 1 1665 204 375 73 0 chr3 141628823 141628919 -17970864 - L2a LINE L2 0 3426 3324 1 1665 180 0 0 0 chr3 141628935 141628955 -17970828 + (T)n Simple_repeat Simple_repeat 1 20 0 1 1665 21 0 0 0 chr3 141629892 141629913 -17969870 + AT_rich Low_complexity Low_complexity 1 21 0 1 1665 777 205 17 39 chr3 141630923 141631101 -17968682 + B3 SINE B2 1 174 -42 1 1665 5240 92 3 1 chr3 141631396 141632118 -17967665 + L1_Mus3 LINE L1 5916 6638 0 1 1665 252 0 0 0 chr3 141632484 141632512 -17967271 + (TTCA)n Simple_repeat Simple_repeat 3 30 0 1 1665 198 0 0 0 chr3 141633223 141633245 -17966538 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 1 1665 293 208 143 0 chr3 141634684 141634761 -17965022 + Charlie22a DNA MER1_type 56 143 -348 1 1665 239 315 76 0 chr3 141636908 141637000 -17962783 + PB1D7 SINE Alu 5 103 -17 1 1665 852 346 71 19 chr3 141637058 141637808 -17961975 + Lx7 LINE L1 6424 7227 -246 1 1665 218 209 0 0 chr3 141638115 141638158 -17961625 + (CAT)n Simple_repeat Simple_repeat 1 43 0 1 1665 1587 280 63 27 chr3 141638277 141639067 -17960716 - L1_Mur3 LINE L1 -1409 4471 3653 1 1665 546 266 78 36 chr3 141639070 141639401 -17960382 + L1_Mur3 LINE L1 3276 3649 -2494 1 1665 24 32 0 0 chr3 141639835 141639866 -17959917 + AT_rich Low_complexity Low_complexity 1 31 0 1 1665 1377 275 56 66 chr3 141642633 141643296 -17956487 + Lx7 LINE L1 5075 5728 -1968 1 1665 868 145 0 7 chr3 141643322 141643461 -17956322 + B1_Mus1 SINE Alu 1 138 -10 1 1665 520 183 157 0 chr3 141646234 141646349 -17953434 + B1_Mur4 SINE Alu 17 149 -1 1 1665 180 266 43 72 chr3 141646506 141646575 -17953208 - L2c LINE L2 -47 3340 3274 1 1665 252 77 0 0 chr3 141647050 141647089 -17952694 + (T)n Simple_repeat Simple_repeat 1 39 0 1 1665 372 338 130 6 chr3 141647783 141647944 -17951839 + B3A SINE B2 2 182 -16 1 1665 202 368 52 9 chr3 141648581 141648696 -17951087 - L2 LINE L2 -941 2478 2359 1 1665 596 325 54 39 chr3 141649774 141650215 -17949568 - L1MB8 LINE L1 -353 5825 5378 1 1665 240 184 0 0 chr3 141650440 141650489 -17949294 + A-rich Low_complexity Low_complexity 1 49 0 1 1665 504 170 0 0 chr3 141651712 141651818 -17947965 + GA-rich Low_complexity Low_complexity 1 106 0 1 1665 778 287 24 0 chr3 141651825 141651989 -17947794 - B3A SINE B2 -28 170 3 1 1665 23 0 0 0 chr3 141652083 141652106 -17947677 + AT_rich Low_complexity Low_complexity 1 23 0 1 1665 22 0 0 0 chr3 141652442 141652464 -17947319 + AT_rich Low_complexity Low_complexity 1 22 0 1 1665 1426 47 5 69 chr3 141655911 141656115 -17943668 - B2_Mm2 SINE B2 -3 192 2 2 1665 669 202 93 0 chr3 141656124 141656253 -17943530 - B1_Mus1 SINE Alu -7 141 1 2 1665 223 400 34 7 chr3 141656650 141656796 -17942987 + MER5B DNA MER1_type 2 151 -27 2 1665 457 319 0 26 chr3 141657200 141657316 -17942467 - PB1 SINE Alu -3 124 12 2 1665 2563 99 0 5 chr3 141658283 141658650 -17941133 + L1_Mus4 LINE L1 6271 6635 -1 2 1665 447 324 126 21 chr3 141659267 141659576 -17940207 + MLT1G LTR MaLR 3 288 -303 2 1665 498 326 110 75 chr3 141659652 141660798 -17938985 + MLT1G-int LTR MaLR 159 1410 -79 2 1665 265 322 61 65 chr3 141661061 141661293 -17938490 + MLT1G LTR MaLR 404 672 -8 2 1665 555 288 88 0 chr3 141661525 141661685 -17938098 + MTEb LTR MaLR 205 378 -1 2 1665 267 191 0 16 chr3 141663287 141663351 -17936432 - B2_Mm2 SINE B2 -2 193 131 2 1665 441 54 0 0 chr3 141664720 141664776 -17935007 + (TG)n Simple_repeat Simple_repeat 1 56 0 2 1665 182 62 0 30 chr3 141665135 141665168 -17934615 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 2 1665 36611 14 2 8 chr3 141665896 141671929 -17927854 + L1Md_A LINE L1 1 5586 -297 2 1665 8821 15 0 0 chr3 141671929 141672925 -17926858 + L1Md_A LINE L1 5587 6582 0 2 1665 186 400 27 0 chr3 141672935 141673010 -17926773 - MIRb SINE MIR -49 219 143 2 1665 544 154 8 8 chr3 141673082 141673157 -17926626 + polypurine Low_complexity Low_complexity 1 76 0 2 1665 991 37 22 7 chr3 141673157 141673292 -17926491 + (GGGGA)n Simple_repeat Simple_repeat 3 139 0 2 1665 544 154 8 8 chr3 141673292 141673340 -17926443 + polypurine Low_complexity Low_complexity 77 124 0 2 1665 3350 94 7 2 chr3 141674382 141674842 -17924941 - L1_Mus3 LINE L1 -2 6636 6175 2 1665 556 86 60 24 chr3 141675221 141675387 -17924396 + (CA)n Simple_repeat Simple_repeat 2 173 0 2 1665 193 156 51 13 chr3 141675415 141675493 -17924290 + (CA)n Simple_repeat Simple_repeat 1 81 0 2 1665 206 167 20 20 chr3 141675509 141675558 -17924225 + (CACAC)n Simple_repeat Simple_repeat 2 50 0 2 1665 312 163 58 19 chr3 141675561 141675717 -17924066 + (CA)n Simple_repeat Simple_repeat 2 163 0 2 1665 371 94 0 19 chr3 141675737 141675791 -17923992 + HAL1-3A_ME LINE L1 1977 2029 -829 2 1665 353 307 89 41 chr3 141676409 141676555 -17923228 + RSINE1 SINE B4 12 164 -1 2 1665 438 234 0 0 chr3 141677690 141677797 -17921986 + (TATATG)n Simple_repeat Simple_repeat 2 108 0 2 1665 250 328 32 72 chr3 141677797 141677922 -17921861 - RMER12 LTR ERVK -471 851 732 2 1665 264 277 9 73 chr3 141678166 141678275 -17921508 + B4A SINE B4 191 292 0 2 1665 261 0 0 0 chr3 141678319 141678348 -17921435 + (CTA)n Simple_repeat Simple_repeat 1 29 0 2 1665 406 236 96 91 chr3 141679905 141680124 -17919659 + MLT1B LTR MaLR 1 220 -170 2 1665 1281 205 42 26 chr3 141680354 141680665 -17919118 + Lx7 LINE L1 6878 7193 -503 2 1665 486 0 0 0 chr3 141680709 141680763 -17919020 + (TC)n Simple_repeat Simple_repeat 1 54 0 2 1665 303 312 83 30 chr3 141680763 141680895 -17918888 + HAL1-3A_ME LINE L1 1980 2118 -740 2 1665 776 40 10 0 chr3 141680911 141681011 -17918772 + (GGAA)n Simple_repeat Simple_repeat 2 102 0 2 1665 1064 82 0 0 chr3 141681195 141681330 -17918453 + B1_Mus1 SINE Alu 5 139 -9 2 1665 261 0 0 0 chr3 141681330 141681359 -17918424 + (CA)n Simple_repeat Simple_repeat 2 30 0 2 1665 2100 180 136 12 chr3 141681625 141682205 -17917578 + Lx9 LINE L1 6986 7637 -7 2 1665 34 42 0 0 chr3 141682298 141682346 -17917437 + AT_rich Low_complexity Low_complexity 1 48 0 2 1665 740 181 24 0 chr3 141683300 141683427 -17916356 + B3 SINE B2 1 130 -86 2 1665 255 340 46 39 chr3 141684098 141684251 -17915532 + MIR SINE MIR 79 232 -30 2 1665 24 32 0 0 chr3 141686393 141686424 -17913359 + AT_rich Low_complexity Low_complexity 1 31 0 2 1665 632 280 46 56 chr3 141687597 141687794 -17911989 - B3A SINE B2 -1 197 3 2 1665 22 56 0 0 chr3 141687794 141687830 -17911953 + AT_rich Low_complexity Low_complexity 1 36 0 2 1665 432 0 0 0 chr3 141688584 141688632 -17911151 + (CA)n Simple_repeat Simple_repeat 2 49 0 2 1666 638 242 31 31 chr3 141689823 141690015 -17909768 + B2_Mm2 SINE B2 1 192 -3 2 1666 584 0 28 0 chr3 141690066 141690137 -17909646 + (GAAA)n Simple_repeat Simple_repeat 4 76 0 2 1666 1027 235 30 46 chr3 141690145 141690515 -17909268 + Lx9 LINE L1 7257 7620 -24 2 1666 1000 122 0 39 chr3 141690563 141690717 -17909066 + B1_Mus1 SINE Alu 1 148 0 2 1666 6559 43 18 1 chr3 141691037 141691834 -17907949 + L1Md_F2 LINE L1 5765 6574 -8 2 1666 246 81 0 0 chr3 141692620 141692657 -17907126 + (A)n Simple_repeat Simple_repeat 1 37 0 2 1666 396 0 0 0 chr3 141694502 141694546 -17905237 + (TA)n Simple_repeat Simple_repeat 1 44 0 2 1666 680 147 36 65 chr3 141695706 141695844 -17903939 + B1_Mus2 SINE Alu 1 134 -13 2 1666 627 81 0 0 chr3 141695844 141695930 -17903853 + (GA)n Simple_repeat Simple_repeat 1 86 0 2 1666 288 0 0 0 chr3 141696610 141696642 -17903141 + (TG)n Simple_repeat Simple_repeat 2 33 0 2 1666 404 190 296 6 chr3 141697795 141697852 -17901931 + Lx9 LINE L1 7407 7511 -133 2 1666 222 37 0 0 chr3 141697852 141697879 -17901904 + (TG)n Simple_repeat Simple_repeat 1 27 0 2 1666 404 190 296 6 chr3 141697879 141697990 -17901793 + Lx9 LINE L1 7512 7624 -20 2 1666 23 0 0 0 chr3 141700650 141700673 -17899110 + AT_rich Low_complexity Low_complexity 1 23 0 2 1666 240 100 0 0 chr3 141701557 141701597 -17898186 + (T)n Simple_repeat Simple_repeat 1 40 0 2 1666 488 252 191 0 chr3 141701885 141702000 -17897783 + RSINE1 SINE B4 6 142 -23 2 1666 1954 152 7 3 chr3 141702191 141702501 -17897282 - RLTR10E LTR ERVK 0 311 1 2 1666 795 300 69 20 chr3 141702507 141702752 -17897031 + B4A SINE B4 14 270 -22 2 1666 366 23 0 0 chr3 141704485 141704528 -17895255 + (TG)n Simple_repeat Simple_repeat 2 44 0 2 1666 30 0 0 0 chr3 141705707 141705737 -17894046 + AT_rich Low_complexity Low_complexity 1 30 0 2 1666 264 71 54 0 chr3 141708829 141708885 -17890898 + (TA)n Simple_repeat Simple_repeat 2 60 0 2 1666 180 182 0 0 chr3 141710682 141710715 -17889068 + L2 LINE L2 1753 1785 -1634 2 1666 260 325 115 16 chr3 141710740 141710862 -17888921 - MIRb SINE MIR -38 230 97 2 1666 417 20 0 0 chr3 141710865 141710915 -17888868 + (CA)n Simple_repeat Simple_repeat 2 51 0 2 1666 238 207 34 17 chr3 141711059 141711118 -17888665 + MLT1D LTR MaLR 82 141 -326 2 1666 239 306 205 5 chr3 141711173 141711373 -17888410 + MLT1D LTR MaLR 266 505 0 2 1666 337 312 87 46 chr3 141713294 141713489 -17886294 + MamRep605 Unknown Unknown 164 366 -510 2 1666 393 285 169 34 chr3 141714681 141714859 -17884924 - B4A SINE B4 -90 202 1 2 1666 863 180 0 0 chr3 141715296 141715446 -17884337 - B1_Mur4 SINE Alu 0 150 1 2 1666 1644 217 86 30 chr3 141717935 141718363 -17881420 + Lx6 LINE L1 7001 7452 -8 2 1666 255 125 0 0 chr3 141719096 141719136 -17880647 + (TA)n Simple_repeat Simple_repeat 2 41 0 2 1666 187 204 75 75 chr3 141719161 141719214 -17880569 - L2b LINE L2 -1 3374 3322 2 1666 483 18 0 0 chr3 141719640 141719696 -17880087 + (TA)n Simple_repeat Simple_repeat 2 57 0 2 1666 267 374 132 41 chr3 141720219 141720584 -17879199 + MLT1D LTR MaLR 41 438 -67 2 1666 21 0 0 0 chr3 141720749 141720770 -17879013 + AT_rich Low_complexity Low_complexity 1 21 0 2 1666 231 36 0 0 chr3 141723881 141723909 -17875874 + (GAAA)n Simple_repeat Simple_repeat 1 28 0 2 1666 546 252 65 41 chr3 141725996 141726166 -17873617 + MLT1B LTR MaLR 217 390 0 2 1666 282 29 0 0 chr3 141726239 141726274 -17873509 + (CAGA)n Simple_repeat Simple_repeat 2 36 0 2 1666 270 73 0 0 chr3 141727741 141727782 -17872001 + (A)n Simple_repeat Simple_repeat 1 41 0 2 1666 292 297 93 40 chr3 141727795 141727946 -17871837 + RSINE1 SINE B4 3 161 -4 2 1666 28 0 0 0 chr3 141727971 141727999 -17871784 + AT_rich Low_complexity Low_complexity 1 28 0 2 1666 253 326 88 20 chr3 141728303 141728450 -17871333 + MIR SINE MIR 87 243 -19 2 1666 482 308 215 20 chr3 141728615 141729066 -17870717 - L1MC4 LINE L1 -4426 1789 1251 2 1666 243 250 26 0 chr3 141729441 141729517 -17870266 - L1MC4 LINE L1 -5472 743 666 2 1666 228 277 99 0 chr3 141730860 141730961 -17868822 - L1MEe LINE L1 -3916 938 828 2 1666 204 40 0 0 chr3 141731302 141731327 -17868456 + (GA)n Simple_repeat Simple_repeat 2 26 0 2 1666 650 278 44 100 chr3 141731612 141731952 -17867831 - MLT1H LTR MaLR -111 438 118 2 1666 21 0 0 0 chr3 141732761 141732782 -17867001 + AT_rich Low_complexity Low_complexity 1 21 0 2 1666 396 0 0 0 chr3 141733156 141733200 -17866583 + (CA)n Simple_repeat Simple_repeat 1 44 0 2 1666 1126 255 108 58 chr3 141733716 141734115 -17865668 - MTD LTR MaLR 0 419 1 2 1666 288 351 36 46 chr3 141734152 141734346 -17865437 + MIRb SINE MIR 50 241 -27 2 1666 1666 177 123 29 chr3 141735502 141735885 -17863898 + MTD LTR MaLR 1 419 0 2 1666 255 307 174 35 chr3 141736228 141736400 -17863383 + MIRb SINE MIR 7 202 -66 2 1666 249 361 0 0 chr3 141737325 141737397 -17862386 + B1F SINE Alu 70 141 -8 2 1666 207 0 0 0 chr3 141737399 141737422 -17862361 + (CAA)n Simple_repeat Simple_repeat 3 25 0 2 1666 26 0 0 0 chr3 141738934 141738960 -17860823 + AT_rich Low_complexity Low_complexity 1 26 0 2 1666 679 219 172 11 chr3 141739097 141739277 -17860506 + B3 SINE B2 3 211 -5 2 1666 709 276 22 6 chr3 141739310 141739492 -17860291 + B3A SINE B2 1 185 -13 2 1666 775 187 15 0 chr3 141739719 141739853 -17859930 + B1_Mur3 SINE Alu 3 138 -11 2 1666 487 211 346 0 chr3 141740474 141740630 -17859153 - B3 SINE B2 -5 211 2 2 1666 231 227 0 0 chr3 141741492 141741558 -17858225 + (TATG)n Simple_repeat Simple_repeat 2 67 0 2 1666 208 225 0 0 chr3 141742113 141742153 -17857630 + (CCA)n Simple_repeat Simple_repeat 2 41 0 2 1666 572 272 12 87 chr3 141742676 141742849 -17856934 + RSINE1 SINE B4 6 165 0 2 1666 1978 181 26 10 chr3 141743173 141743558 -17856225 + Lx5 LINE L1 6660 7050 0 3 1666 733 105 3 39 chr3 141744148 141744276 -17855507 - B1_Mur3 SINE Alu 0 149 24 3 1666 321 338 127 20 chr3 141744701 141744946 -17854837 + L1M4 LINE L1 4677 4947 -1199 3 1666 1281 263 93 55 chr3 141745574 141746187 -17853596 + L1MB2 LINE L1 5504 6139 -32 3 1666 396 0 0 0 chr3 141747554 141747598 -17852185 + (T)n Simple_repeat Simple_repeat 1 44 0 3 1666 403 357 21 0 chr3 141747684 141747827 -17851956 - ID_B1 SINE B4 -1 223 78 3 1666 210 114 45 0 chr3 141748158 141748202 -17851581 + (TA)n Simple_repeat Simple_repeat 1 46 0 3 1666 346 322 85 11 chr3 141748370 141748546 -17851237 + MIRb SINE MIR 18 206 -62 3 1666 252 143 0 0 chr3 141751991 141752033 -17847750 + (GGGA)n Simple_repeat Simple_repeat 4 45 0 3 1666 586 318 57 32 chr3 141755469 141755752 -17844031 + B4A SINE B4 2 291 -1 3 1666 243 189 0 0 chr3 141755755 141755808 -17843975 + (CACG)n Simple_repeat Simple_repeat 1 53 0 3 1666 24 32 0 0 chr3 141756934 141756965 -17842818 + AT_rich Low_complexity Low_complexity 1 31 0 3 1666 216 0 0 0 chr3 141758778 141758802 -17840981 + (T)n Simple_repeat Simple_repeat 1 24 0 3 1666 597 155 343 6 chr3 141759627 141759796 -17839987 - URR1A DNA MER1_type 0 226 1 3 1666 207 0 0 0 chr3 141759912 141759935 -17839848 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 3 1666 287 250 68 0 chr3 141760001 141760089 -17839694 - L1MA5 LINE L1 -3 6297 6204 3 1666 501 331 39 17 chr3 141760143 141760324 -17839459 - B4A SINE B4 -77 215 31 3 1666 409 298 96 30 chr3 141761484 141761681 -17838102 + MER20B DNA MER1_type 138 347 -436 3 1666 32 86 0 0 chr3 141761681 141761762 -17838021 + AT_rich Low_complexity Low_complexity 1 81 0 3 1666 616 199 96 0 chr3 141762623 141762759 -17837024 + B1_Mur2 SINE Alu 1 149 0 3 1666 222 328 69 0 chr3 141762950 141763008 -17836775 + ID2 SINE ID 7 68 -15 3 1666 239 79 26 0 chr3 141763213 141763251 -17836532 + (CA)n Simple_repeat Simple_repeat 1 39 0 3 1666 654 256 91 24 chr3 141764075 141764283 -17835500 - RMER15 LTR ERVL -16 559 338 3 1666 4027 150 20 30 chr3 141765374 141766138 -17833645 + RMER6A LTR ERVK 1 756 0 3 1666 297 302 170 16 chr3 141766140 141766525 -17833258 + Charlie4a DNA MER1_type 65 508 0 3 1666 389 323 108 10 chr3 141766934 141767128 -17832655 - RMER15 LTR ERVL -15 560 348 3 1666 584 91 11 0 chr3 141767414 141767502 -17832281 + (TC)n Simple_repeat Simple_repeat 1 89 0 3 1666 355 223 15 104 chr3 141768182 141768207 -17831576 - ORR1E LTR MaLR -1 378 352 3 1666 207 0 0 0 chr3 141768207 141768230 -17831553 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 3 1666 734 245 31 141 chr3 141768230 141768607 -17831176 - ORR1E LTR MaLR -28 351 7 3 1666 499 272 55 101 chr3 141769596 141769833 -17829950 - B4A SINE B4 -64 228 3 3 1666 817 256 10 10 chr3 141770034 141770239 -17829544 + B3 SINE B2 2 206 -10 3 1666 306 0 0 0 chr3 141770249 141770283 -17829500 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 3 1666 1095 52 0 0 chr3 141770284 141770418 -17829365 - B1_Mm SINE Alu -12 135 2 3 1666 242 317 29 0 chr3 141770783 141770887 -17828896 - PB1D10 SINE Alu -9 108 2 3 1666 225 252 221 30 chr3 141771973 141772104 -17827679 - L1MA9 LINE L1 -164 6148 5993 3 1666 3288 45 0 2 chr3 141772133 141772530 -17827253 - MTA_Mm LTR MaLR 0 396 1 3 1666 507 264 18 0 chr3 141774009 141774119 -17825664 - B1F SINE Alu -1 148 37 3 1666 285 330 23 0 chr3 141774120 141774208 -17825575 - B1F2 SINE Alu -58 91 2 3 1666 1689 252 55 57 chr3 141775680 141776447 -17823336 + RMER20A LTR ERVK 1 731 -177 3 1666 529 265 50 37 chr3 141776475 141776636 -17823147 + B3 SINE B2 50 212 -4 3 1666 581 279 167 39 chr3 141776902 141777159 -17822624 + B4 SINE B4 1 290 -2 3 1666 390 312 61 56 chr3 141778709 141778889 -17820894 - MIR SINE MIR 0 262 82 3 1666 22 56 0 0 chr3 141779322 141779358 -17820425 + AT_rich Low_complexity Low_complexity 1 36 0 3 1666 385 236 31 41 chr3 141780626 141780723 -17819060 - MER5A DNA MER1_type -20 169 74 3 1666 360 281 66 7 chr3 141780827 141780963 -17818820 - MER103 DNA DNA -20 146 3 3 1666 459 48 0 0 chr3 141781230 141781292 -17818491 + (TC)n Simple_repeat Simple_repeat 1 62 0 3 1666 204 319 0 28 chr3 141781484 141781555 -17818228 - MIRc SINE MIR -45 223 155 3 1666 292 247 12 25 chr3 141782827 141782989 -17816794 + GA-rich Low_complexity Low_complexity 2 161 0 3 1666 216 0 0 0 chr3 141784901 141784925 -17814858 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 3 1666 267 359 60 0 chr3 141784952 141785069 -17814714 - B1_Mur2 SINE Alu -25 124 1 3 1666 698 244 40 17 chr3 141785069 141785141 -17814642 - ID SINE ID -143 81 6 3 1666 314 288 95 9 chr3 141786664 141786769 -17813014 + MLT1A1 LTR MaLR 295 408 0 3 1666 342 0 0 0 chr3 141789013 141789051 -17810732 + (CA)n Simple_repeat Simple_repeat 2 39 0 3 1666 269 309 82 41 chr3 141789439 141789537 -17810246 + L2a LINE L2 3300 3401 -25 3 1666 269 304 0 0 chr3 141789635 141789704 -17810079 + MIR SINE MIR 123 191 -71 3 1666 239 276 108 33 chr3 141789882 141790002 -17809781 + MTEa LTR MaLR 251 379 0 3 1666 335 311 208 36 chr3 141790002 141790263 -17809520 - MLT1A0 LTR MaLR -57 308 1 3 1666 435 278 85 23 chr3 141790428 141790449 -17809334 + ID_B1 SINE B4 62 90 -134 3 1666 439 252 87 0 chr3 141790449 141790564 -17809219 + B1F2 SINE Alu 3 127 -22 3 1666 337 140 17 17 chr3 141790557 141790615 -17809168 + ID_B1 SINE B4 142 199 -25 3 1666 384 177 16 0 chr3 141790616 141790678 -17809105 + B1F SINE Alu 65 127 -22 3 1666 260 250 29 29 chr3 141790617 141790687 -17809096 + RLTR25A LTR ERVK 540 609 -494 3 1666 423 333 8 8 chr3 141790874 141790992 -17808791 + Tigger5 DNA MER2_type 102 219 -2187 3 1666 348 353 174 20 chr3 141792607 141793489 -17806294 + L2a LINE L2 2316 3338 -88 3 1666 1184 55 0 0 chr3 141793626 141793771 -17806012 + B1_Mus1 SINE Alu 3 147 -1 3 1666 1160 215 97 28 chr3 141794763 141795155 -17804628 - MTD LTR MaLR 0 419 1 3 1666 709 323 74 11 chr3 141795835 141796104 -17803679 + B4A SINE B4 1 286 -6 3 1666 204 324 14 0 chr3 141796108 141796179 -17803604 + (CATATA)n Simple_repeat Simple_repeat 3 74 0 3 1666 368 274 52 46 chr3 141797811 141797964 -17801819 + LTR81B LTR ERV1? 61 214 -1179 3 1666 23 0 0 0 chr3 141798198 141798221 -17801562 + AT_rich Low_complexity Low_complexity 1 23 0 3 1666 269 287 147 11 chr3 141798959 141799054 -17800729 + PB1D10 SINE Alu 8 115 -2 3 1666 338 0 24 0 chr3 141799926 141799968 -17799815 + (CA)n Simple_repeat Simple_repeat 1 43 0 3 1666 355 289 75 28 chr3 141800257 141800364 -17799419 + RSINE1 SINE B4 37 148 -17 3 1666 180 0 0 0 chr3 141800374 141800394 -17799389 + (CA)n Simple_repeat Simple_repeat 2 21 0 3 1666 4821 113 5 32 chr3 141800623 141801372 -17798411 + Lx3A LINE L1 6248 6976 -5 3 1666 181 331 91 15 chr3 141801873 141802005 -17797778 - MIRc SINE MIR -117 151 10 3 1666 201 47 45 23 chr3 141802601 141802645 -17797138 + (TTTTTG)n Simple_repeat Simple_repeat 1 45 0 3 1666 399 75 146 24 chr3 141802700 141802782 -17797001 + L1_Mur2 LINE L1 4213 4304 -1573 3 1666 207 0 0 0 chr3 141802979 141803002 -17796781 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 3 1666 629 314 34 44 chr3 141803822 141804115 -17795668 + B4A SINE B4 1 290 -2 3 1666 396 0 0 0 chr3 141804136 141804180 -17795603 + (CA)n Simple_repeat Simple_repeat 2 45 0 3 1666 201 319 43 26 chr3 141804524 141804640 -17795143 + MER5A DNA MER1_type 37 154 -35 3 1666 411 21 0 0 chr3 141805333 141805381 -17794402 + (TC)n Simple_repeat Simple_repeat 1 48 0 3 1666 387 0 0 0 chr3 141805381 141805423 -17794360 + (CA)n Simple_repeat Simple_repeat 1 43 0 3 1666 1403 54 20 0 chr3 141807260 141807609 -17792174 + (TTC)n Simple_repeat Simple_repeat 1 355 0 3 1666 342 395 47 0 chr3 141807761 141808014 -17791769 + L1M4b LINE L1 125 389 -6945 3 1666 2725 198 43 129 chr3 141808041 141808820 -17790963 - RMER19B LTR ERVK -238 664 1 3 1666 594 269 170 4 chr3 141808824 141809100 -17790683 + L1M4b LINE L1 760 1081 -6253 3 1666 850 291 102 22 chr3 141809162 141810082 -17789701 + L1M4b LINE L1 1255 2281 -4727 3 1666 395 343 81 74 chr3 141810135 141810541 -17789242 + MLT2B3 LTR ERVL 1 409 -145 3 1666 516 266 57 0 chr3 141810651 141810775 -17789008 + B1F SINE Alu 12 142 -7 3 1666 343 108 0 44 chr3 141810775 141810843 -17788940 + G-rich Low_complexity Low_complexity 3 67 0 3 1666 356 213 122 41 chr3 141810867 141811014 -17788769 + L1MB8 LINE L1 5217 5375 -771 3 1666 272 372 20 0 chr3 141811112 141811214 -17788569 - MER2 DNA MER2_type 0 345 242 3 1666 596 313 89 11 chr3 141811412 141811807 -17787976 + L1MB8 LINE L1 5502 5923 -255 3 1666 228 308 22 51 chr3 141811903 141812040 -17787743 + L1M4b LINE L1 4563 4695 -2311 3 1666 206 95 0 23 chr3 141812169 141812212 -17787571 + (TAAA)n Simple_repeat Simple_repeat 1 42 0 3 1666 2186 144 13 2 chr3 141812338 141812736 -17787047 + L1_Mur1 LINE L1 3271 3672 -2214 3 1666 446 163 204 7 chr3 141812800 141812942 -17786841 + Lx2B LINE L1 6831 7000 0 3 1666 261 0 0 0 chr3 141813060 141813089 -17786694 + (A)n Simple_repeat Simple_repeat 1 29 0 3 1666 213 39 0 0 chr3 141813099 141813125 -17786658 + (GAAA)n Simple_repeat Simple_repeat 3 28 0 3 1666 328 309 119 75 chr3 141813425 141813796 -17785987 + L1M4b LINE L1 5485 5871 -1135 3 1666 182 164 12 37 chr3 141815444 141815526 -17784257 + A-rich Low_complexity Low_complexity 5 84 0 3 1666 647 94 19 0 chr3 141815537 141815643 -17784140 + Lx3A LINE L1 6869 6976 -5 3 1666 27 0 0 0 chr3 141815644 141815671 -17784112 + AT_rich Low_complexity Low_complexity 1 27 0 3 1666 482 305 17 0 chr3 141815678 141815855 -17783928 - Lx7 LINE L1 -389 7307 7128 4 1666 399 248 73 13 chr3 141816094 141816115 -17783668 + L1MA4A LINE L1 5766 5786 -370 4 1666 464 0 18 0 chr3 141816115 141816171 -17783612 + (CA)n Simple_repeat Simple_repeat 2 58 0 4 1666 523 249 67 25 chr3 141816171 141816397 -17783386 + L1MA4A LINE L1 5787 6025 -278 4 1666 181 269 62 37 chr3 141816708 141816789 -17782994 + L4 LINE RTE 1426 1508 -521 4 1666 219 36 0 0 chr3 141819260 141819288 -17780495 + (GGAA)n Simple_repeat Simple_repeat 4 31 0 4 1667 240 349 0 0 chr3 141820658 141820724 -17779059 + ID4_ SINE ID 14 79 -4 4 1667 234 343 0 41 chr3 141820663 141820736 -17779047 + ID SINE ID 20 89 -135 4 1667 261 355 174 5 chr3 141821341 141821542 -17778241 + B4 SINE B4 46 280 -12 4 1667 207 254 0 0 chr3 141821549 141821604 -17778179 + (CA)n Simple_repeat Simple_repeat 2 56 0 4 1667 3567 159 114 1 chr3 141822350 141823010 -17776773 - RMER19A LTR ERVK 0 737 4 4 1667 698 297 31 116 chr3 141824438 141824511 -17775272 + B4A SINE B4 39 87 -205 4 1667 225 0 0 0 chr3 141824511 141824536 -17775247 + (CA)n Simple_repeat Simple_repeat 2 26 0 4 1667 698 297 31 116 chr3 141824536 141824721 -17775062 + B4A SINE B4 88 275 -17 4 1667 234 208 0 0 chr3 141824755 141824808 -17774975 + (CA)n Simple_repeat Simple_repeat 2 54 0 4 1667 480 139 0 0 chr3 141825133 141825212 -17774571 + (GGGA)n Simple_repeat Simple_repeat 1 79 0 4 1667 2238 76 3 10 chr3 141825257 141825564 -17774219 + L1_Mus3 LINE L1 6319 6623 -15 4 1667 271 108 0 0 chr3 141826051 141826088 -17773695 - MurSatRep1 Unknown Unknown -1871 266 230 4 1667 338 264 23 0 chr3 141826088 141826175 -17773608 - PB1D9 SINE Alu -30 90 2 4 1667 316 345 66 16 chr3 141829180 141829301 -17770482 - B1_Mus2 SINE Alu -12 135 9 4 1667 185 281 17 34 chr3 141829839 141829898 -17769885 + MIRm SINE MIR 111 168 -108 4 1667 204 97 0 0 chr3 141832174 141832205 -17767578 + (CCG)n Simple_repeat Simple_repeat 1 31 0 4 1667 356 286 157 0 chr3 141835034 141835174 -17764609 - B3A SINE B2 -16 182 21 4 1667 239 321 39 31 chr3 141835528 141835681 -17764102 - MIR SINE MIR -106 170 2 4 1667 233 119 24 0 chr3 141835961 141836003 -17763780 + (TCTCCC)n Simple_repeat Simple_repeat 3 45 0 4 1667 234 218 141 0 chr3 141836800 141836878 -17762905 - B1F1 SINE Alu -59 90 2 4 1667 401 296 0 27 chr3 141837534 141837645 -17762138 + PB1D10 SINE Alu 1 108 -9 4 1667 231 305 0 0 chr3 141837675 141837734 -17762049 + ID4 SINE ID 8 66 -17 4 1667 574 287 209 36 chr3 141837857 141838191 -17761592 - MTD LTR MaLR -14 407 7 4 1667 417 116 0 0 chr3 141838453 141838522 -17761261 + (GA)n Simple_repeat Simple_repeat 2 70 0 4 1667 197 290 16 16 chr3 141839029 141839092 -17760691 + L2a LINE L2 3331 3393 -33 4 1667 22 0 0 0 chr3 141839260 141839282 -17760501 + AT_rich Low_complexity Low_complexity 1 22 0 4 1667 351 0 0 0 chr3 141839597 141839636 -17760147 + (TG)n Simple_repeat Simple_repeat 2 40 0 4 1667 428 262 66 72 chr3 141839752 141839933 -17759850 - B4 SINE B4 -112 180 1 4 1667 254 132 19 0 chr3 141839986 141840039 -17759744 + (TA)n Simple_repeat Simple_repeat 1 54 0 4 1667 3576 20 0 0 chr3 141840059 141840455 -17759328 + MTA_Mm LTR MaLR 1 396 0 4 1667 258 105 0 0 chr3 141840455 141840493 -17759290 + (TG)n Simple_repeat Simple_repeat 2 39 0 4 1667 273 268 65 84 chr3 141840533 141840688 -17759095 + B4A SINE B4 141 292 0 4 1667 369 0 0 0 chr3 141840968 141841009 -17758774 + (CA)n Simple_repeat Simple_repeat 2 42 0 4 1667 240 35 0 0 chr3 141841860 141841889 -17757894 + (A)n Simple_repeat Simple_repeat 1 29 0 4 1667 351 0 0 0 chr3 141842418 141842457 -17757326 + (A)n Simple_repeat Simple_repeat 1 39 0 4 1667 205 267 17 0 chr3 141842654 141842714 -17757069 + MIR SINE MIR 26 86 -176 4 1667 574 343 84 4 chr3 141842746 141843021 -17756762 + LTR33C LTR ERVL 23 319 -310 4 1667 460 274 146 10 chr3 141843294 141843486 -17756297 + B4 SINE B4 1 218 -74 4 1667 202 200 0 0 chr3 141843490 141843525 -17756258 + (CAA)n Simple_repeat Simple_repeat 2 36 0 4 1667 318 50 0 0 chr3 141843569 141843609 -17756174 + (CA)n Simple_repeat Simple_repeat 2 41 0 4 1667 335 237 103 57 chr3 141844328 141844632 -17755151 - Charlie1b DNA MER1_type 0 523 157 4 1667 24 32 0 0 chr3 141845133 141845164 -17754619 + AT_rich Low_complexity Low_complexity 1 31 0 4 1667 324 70 0 0 chr3 141845370 141845413 -17754370 + (CA)n Simple_repeat Simple_repeat 1 43 0 4 1667 459 0 0 0 chr3 141845414 141845465 -17754318 + (GA)n Simple_repeat Simple_repeat 1 51 0 4 1667 33 25 0 0 chr3 141848389 141848429 -17751354 + AT_rich Low_complexity Low_complexity 1 40 0 4 1667 605 209 98 44 chr3 141848485 141848690 -17751093 + B3 SINE B2 1 216 0 4 1667 958 297 32 14 chr3 141848932 141849209 -17750574 + B4 SINE B4 7 288 -4 4 1667 209 311 0 0 chr3 141849214 141849275 -17750508 + (CA)n Simple_repeat Simple_repeat 2 62 0 4 1667 309 61 0 0 chr3 141849760 141849809 -17749974 + B3 SINE B2 165 213 -3 4 1667 250 152 85 0 chr3 141850895 141850954 -17748829 + Lx9 LINE L1 7578 7641 -3 4 1667 293 218 24 120 chr3 141851149 141851274 -17748509 + B3A SINE B2 86 198 0 4 1667 363 313 9 9 chr3 141851345 141851461 -17748322 - PB1 SINE Alu -11 116 1 4 1667 22 0 0 0 chr3 141851828 141851850 -17747933 + AT_rich Low_complexity Low_complexity 1 22 0 4 1667 483 333 54 25 chr3 141853245 141853522 -17746261 + B4A SINE B4 2 286 -6 4 1667 201 108 0 0 chr3 141853524 141853561 -17746222 + (CAGA)n Simple_repeat Simple_repeat 2 38 0 4 1667 219 343 0 37 chr3 141853623 141853732 -17746051 + L2c LINE L2 3282 3386 -1 4 1667 316 250 244 26 chr3 141853805 141853961 -17745822 - Tigger7 DNA MER2_type -9 2482 2293 4 1667 288 298 43 0 chr3 141853980 141854074 -17745709 - Tigger7 DNA MER2_type -2374 117 20 4 1667 295 278 0 53 chr3 141854950 141855064 -17744719 - MLT1I LTR MaLR -23 388 281 4 1667 25 65 0 0 chr3 141858181 141858227 -17741556 + AT_rich Low_complexity Low_complexity 1 46 0 4 1667 285 29 0 0 chr3 141858264 141858298 -17741485 + (TTTTG)n Simple_repeat Simple_repeat 1 34 0 4 1667 505 232 0 10 chr3 141858319 141858419 -17741364 - B1_Mur1 SINE Alu -25 124 26 4 1667 450 117 9 211 chr3 141858448 141858556 -17741227 + RMER17C LTR ERVK 93 184 -226 4 1667 312 27 0 0 chr3 141858556 141858593 -17741190 + (TCCCC)n Simple_repeat Simple_repeat 4 40 0 4 1667 596 50 12 0 chr3 141858599 141858679 -17741104 + (TTC)n Simple_repeat Simple_repeat 3 83 0 4 1667 450 117 9 211 chr3 141858679 141858790 -17740993 + RMER17C LTR ERVK 185 273 -137 4 1667 786 171 6 12 chr3 141859336 141859496 -17740287 + Lx4A LINE L1 6899 7057 -1 4 1667 21 82 0 0 chr3 141859808 141859857 -17739926 + AT_rich Low_complexity Low_complexity 1 49 0 4 1667 410 184 151 28 chr3 141860177 141860283 -17739500 + PB1D7 SINE Alu 2 120 0 4 1667 224 260 19 13 chr3 141860284 141860441 -17739342 + GA-rich Low_complexity Low_complexity 1 158 0 4 1667 237 254 160 8 chr3 141860637 141860756 -17739027 + B4A SINE B4 2 138 -154 4 1667 279 79 0 0 chr3 141861428 141861466 -17738317 + (CCA)n Simple_repeat Simple_repeat 1 38 0 4 1667 564 273 108 27 chr3 141861959 141862181 -17737602 + B4A SINE B4 1 240 -52 4 1667 821 254 19 5 chr3 141862548 141862758 -17737025 - B3 SINE B2 0 216 4 4 1667 356 316 0 25 chr3 141863303 141863423 -17736360 - PB1D10 SINE Alu 0 117 1 4 1667 2178 81 29 0 chr3 141864544 141864854 -17734929 - ORR1A2 LTR MaLR -8 319 1 4 1667 863 232 11 6 chr3 141865103 141865285 -17734498 + B3 SINE B2 3 185 -31 4 1667 784 190 157 5 chr3 141865286 141865471 -17734312 - MTD LTR MaLR 0 419 207 4 1667 659 246 16 0 chr3 141865471 141865597 -17734186 + ETnERV2-int LTR ERVK 7075 7202 -204 4 1667 534 244 0 25 chr3 141865986 141866104 -17733679 - MTD LTR MaLR -200 219 105 4 1667 5616 193 93 20 chr3 141866104 141867467 -17732316 + Lx7 LINE L1 6198 7692 -4 4 1667 283 215 31 0 chr3 141867482 141867547 -17732236 - MTD LTR MaLR -333 86 20 4 1667 454 346 79 58 chr3 141867635 141868067 -17731716 - LTR40b LTR ERVL -17 445 5 4 1667 209 286 133 71 chr3 141868109 141868335 -17731448 + L2 LINE L2 2769 3008 -411 4 1667 283 311 94 39 chr3 141870103 141870337 -17729446 + L1MC4a LINE L1 7114 7360 -522 4 1667 489 290 70 54 chr3 141870704 141870890 -17728893 + ID_B1 SINE B4 32 220 -4 4 1667 390 42 0 0 chr3 141871312 141871360 -17728423 + (TAAA)n Simple_repeat Simple_repeat 1 48 0 4 1667 276 278 52 0 chr3 141871412 141871509 -17728274 - PB1D10 SINE Alu -6 111 10 4 1667 23 33 0 0 chr3 141872735 141872765 -17727018 + AT_rich Low_complexity Low_complexity 1 30 0 4 1667 21 0 0 0 chr3 141872949 141872970 -17726813 + AT_rich Low_complexity Low_complexity 1 21 0 4 1667 2144 162 53 112 chr3 141873532 141874046 -17725737 + RMER5 LTR ERV1 17 506 -28 4 1667 195 42 0 0 chr3 141874046 141874070 -17725713 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 4 1667 689 231 0 7 chr3 141874073 141874208 -17725575 - B1_Mur2 SINE Alu -15 134 1 4 1667 2144 162 53 112 chr3 141874208 141874240 -17725543 + RMER5 LTR ERV1 507 534 0 4 1667 25 51 0 0 chr3 141876194 141876233 -17723550 + AT_rich Low_complexity Low_complexity 1 39 0 4 1667 306 246 8 25 chr3 141876312 141876433 -17723350 + (CATATA)n Simple_repeat Simple_repeat 6 124 0 4 1667 663 351 98 62 chr3 141876630 141877799 -17721984 + L1M5 LINE L1 2426 3637 -2509 4 1667 301 277 30 30 chr3 141877862 141877996 -17721787 + L1M5 LINE L1 4399 4532 -1614 4 1667 2287 161 75 26 chr3 141878903 141879331 -17720452 + Lx2 LINE L1 6548 6996 -1 4 1667 327 25 0 0 chr3 141880583 141880623 -17719160 + (TG)n Simple_repeat Simple_repeat 1 40 0 4 1667 636 107 0 0 chr3 141880623 141880726 -17719057 + (GAAA)n Simple_repeat Simple_repeat 4 106 0 4 1667 394 336 0 0 chr3 141880911 141881039 -17718744 + (TG)n Simple_repeat Simple_repeat 2 129 0 4 1667 1195 256 50 28 chr3 141881388 141881750 -17718033 + MTE2b LTR MaLR 8 377 -2 5 1667 515 16 16 0 chr3 141881896 141881960 -17717823 + (TG)n Simple_repeat Simple_repeat 2 66 0 5 1667 1974 106 40 0 chr3 141882219 141882522 -17717261 + ORR1A2 LTR MaLR 5 319 -8 5 1667 297 0 0 0 chr3 141883439 141883472 -17716311 + (T)n Simple_repeat Simple_repeat 1 33 0 5 1667 230 330 54 21 chr3 141883496 141883589 -17716194 - ID_B1 SINE B4 -8 216 121 5 1667 547 276 156 49 chr3 141883607 141883934 -17715849 + MLT1D LTR MaLR 85 446 -59 5 1667 245 246 124 101 chr3 141884129 141884346 -17715437 + Lx4B LINE L1 6837 7058 0 5 1667 271 250 82 52 chr3 141884622 141884719 -17715064 + MLT1A LTR MaLR 229 328 -46 5 1667 318 80 0 0 chr3 141884867 141884917 -17714866 + (TG)n Simple_repeat Simple_repeat 2 51 0 5 1667 463 297 33 26 chr3 141884930 141885082 -17714701 - RSINE1 SINE B4 -8 157 5 5 1667 607 274 105 34 chr3 141885250 141885601 -17714182 - Lx9 LINE L1 -42 7602 7227 5 1667 491 261 200 21 chr3 141886694 141886929 -17712854 - B4A SINE B4 -14 278 2 5 1667 693 137 0 0 chr3 141887822 141887953 -17711830 + (CA)n Simple_repeat Simple_repeat 2 132 0 5 1667 279 264 134 7 chr3 141890680 141890829 -17708954 + L2 LINE L2 2864 3031 -388 5 1667 351 0 0 0 chr3 141892283 141892322 -17707461 + (CA)n Simple_repeat Simple_repeat 1 39 0 5 1667 289 28 0 0 chr3 141892550 141892586 -17707197 - RLTR13D3 LTR ERVK -1078 36 1 5 1667 1028 153 118 10 chr3 141892737 141892941 -17706842 + URR1A DNA MER1_type 1 226 0 5 1667 2220 200 32 2 chr3 141893067 141893473 -17706310 - MTD LTR MaLR -1 418 1 5 1667 306 143 32 97 chr3 141893920 141894013 -17705770 + MER5A DNA MER1_type 40 126 -63 5 1667 310 274 105 47 chr3 141894087 141894259 -17705524 + MER5A DNA MER1_type 7 188 -1 5 1667 563 282 6 49 chr3 141894365 141894529 -17705254 + RSINE1 SINE B4 9 165 0 5 1667 374 186 12 0 chr3 141894529 141894615 -17705168 + (CA)n Simple_repeat Simple_repeat 1 87 0 5 1667 243 0 0 0 chr3 141895086 141895113 -17704670 + (CAA)n Simple_repeat Simple_repeat 1 27 0 5 1667 294 29 0 0 chr3 141895961 141895996 -17703787 + (CA)n Simple_repeat Simple_repeat 2 36 0 5 1667 608 271 23 37 chr3 141896125 141896289 -17703494 + ID_B1 SINE B4 72 229 -63 5 1667 1493 52 10 5 chr3 141898050 141898243 -17701540 - B2_Mm2 SINE B2 -1 194 1 5 1667 210 139 0 65 chr3 141898356 141898402 -17701381 + CT-rich Low_complexity Low_complexity 3 45 0 5 1667 590 284 144 22 chr3 141898409 141898589 -17701194 - ID_B1 SINE B4 -22 202 1 5 1667 495 179 48 57 chr3 141898911 141899035 -17700748 + LTR41B LTR ERVL 2 124 -634 5 1667 269 342 131 5 chr3 141899071 141899262 -17700521 + LTR41B LTR ERVL 220 434 -324 5 1667 610 228 119 45 chr3 141899435 141899637 -17700146 - B4A SINE B4 -74 218 2 5 1667 420 189 111 117 chr3 141899637 141899774 -17700009 + LTR41B LTR ERVL 620 755 -3 5 1667 310 336 35 0 chr3 141901083 141901196 -17698587 + PB1D10 SINE Alu 1 117 0 5 1667 22 0 0 0 chr3 141902626 141902648 -17697135 + AT_rich Low_complexity Low_complexity 1 22 0 5 1667 309 51 0 0 chr3 141904192 141904231 -17695552 + (CA)n Simple_repeat Simple_repeat 1 39 0 5 1667 256 331 95 82 chr3 141906181 141906245 -17693538 - RSINE1 SINE B4 -4 161 2 5 1667 553 191 21 0 chr3 141906245 141906339 -17693444 - B3A SINE B2 -102 96 1 5 1667 23 33 0 0 chr3 141906741 141906771 -17693012 + AT_rich Low_complexity Low_complexity 1 30 0 5 1667 720 234 7 0 chr3 141906814 141906955 -17692828 + B1_Mur1 SINE Alu 3 144 -5 5 1667 771 267 34 43 chr3 141906985 141907220 -17692563 + B4 SINE B4 53 285 -7 5 1667 25 31 0 0 chr3 141907687 141907719 -17692064 + AT_rich Low_complexity Low_complexity 1 32 0 5 1667 315 0 0 0 chr3 141908499 141908534 -17691249 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 5 1667 217 292 185 32 chr3 141908872 141909088 -17690695 - L2 LINE L2 -701 2718 2470 5 1667 275 244 123 37 chr3 141912989 141913151 -17686632 - L1MB1 LINE L1 -2 6166 5991 5 1667 472 280 22 22 chr3 141913183 141913318 -17686465 - B1F SINE Alu -14 135 1 5 1667 333 317 80 12 chr3 141913535 141913698 -17686085 - MIRc SINE MIR -31 237 64 5 1667 308 350 95 11 chr3 141913920 141914099 -17685684 + B4A SINE B4 91 284 -8 5 1667 369 0 0 0 chr3 141914138 141914179 -17685604 + (CA)n Simple_repeat Simple_repeat 2 42 0 5 1667 243 335 59 35 chr3 141914583 141914753 -17685030 + L4 LINE RTE 771 944 -1085 5 1667 334 307 41 93 chr3 141915141 141915335 -17684448 + L4 LINE RTE 1425 1608 -421 5 1667 194 0 39 0 chr3 141915470 141915496 -17684287 + (CAAA)n Simple_repeat Simple_repeat 1 27 0 5 1667 216 97 0 0 chr3 141915636 141915667 -17684116 + (TG)n Simple_repeat Simple_repeat 2 32 0 5 1667 407 353 27 3 chr3 141915699 141915932 -17683851 - B4A SINE B4 -6 286 1 5 1667 217 194 125 11 chr3 141917799 141917878 -17681905 + MIR SINE MIR 45 138 -130 5 1667 23 78 0 0 chr3 141920130 141920181 -17679602 + AT_rich Low_complexity Low_complexity 1 51 0 5 1667 252 0 0 0 chr3 141920504 141920532 -17679251 + (CA)n Simple_repeat Simple_repeat 2 29 0 5 1667 774 251 26 0 chr3 141920534 141920761 -17679022 - Lx9 LINE L1 -190 7454 7222 5 1667 289 269 178 0 chr3 141920874 141920974 -17678809 + B1F1 SINE Alu 2 133 -16 5 1667 232 288 27 0 chr3 141921769 141921842 -17677941 + MIR3 SINE MIR 119 193 -15 5 1667 414 0 0 0 chr3 141924410 141924456 -17675327 + (CA)n Simple_repeat Simple_repeat 2 47 0 5 1667 214 256 26 0 chr3 141926199 141926277 -17673506 + (CA)n Simple_repeat Simple_repeat 1 80 0 5 1667 2947 76 35 10 chr3 141926800 141927197 -17672586 - MTB_Mm LTR MaLR 0 407 1 5 1667 508 320 7 7 chr3 141928656 141928804 -17670979 - RSINE1 SINE B4 -10 155 8 5 1667 754 204 63 17 chr3 141928890 141929065 -17670718 + B4A SINE B4 5 187 -105 5 1667 885 258 186 69 chr3 141929065 141929528 -17670255 + MT2A LTR ERVL 17 533 0 5 1667 324 259 24 0 chr3 141929528 141929612 -17670171 + B4A SINE B4 207 292 0 5 1667 239 296 26 61 chr3 141929624 141929739 -17670044 + MT2B2 LTR ERVL 142 252 -332 5 1667 400 324 19 0 chr3 141929645 141929753 -17670030 + ID_B1 SINE B4 82 191 -33 5 1667 321 331 22 59 chr3 141929753 141929780 -17670003 + B1_Mm SINE Alu 1 130 -17 5 1667 1991 56 3 0 chr3 141929780 141930067 -17669716 + L1_Mm LINE L1 1299 1586 -4297 5 1667 1102 164 309 4 chr3 141930822 141931097 -17668686 + ORR1B2 LTR MaLR 9 367 0 5 1667 366 315 0 0 chr3 141931097 141931189 -17668594 - MER58B DNA MER1_type -76 265 174 5 1667 388 286 179 57 chr3 141932781 141933041 -17666742 + B4A SINE B4 1 292 0 5 1667 225 343 81 0 chr3 141933170 141933269 -17666514 + PB1D9 SINE Alu 1 107 -13 5 1667 478 204 27 18 chr3 141933610 141933720 -17666063 + MTC LTR MaLR 1 111 -310 5 1667 218 260 111 30 chr3 141935493 141935592 -17664191 - MIRb SINE MIR -50 218 112 5 1667 282 345 33 11 chr3 141935599 141935690 -17664093 + B1F1 SINE Alu 1 93 -56 5 1667 22 88 0 0 chr3 141936152 141936209 -17663574 + AT_rich Low_complexity Low_complexity 1 57 0 5 1667 266 289 0 12 chr3 141936209 141936293 -17663490 + ID4 SINE ID 1 83 0 5 1667 304 252 50 14 chr3 141937208 141937349 -17662434 + L1MA5 LINE L1 6155 6300 0 5 1667 323 313 94 47 chr3 141938709 141938880 -17660903 + MER2 DNA MER2_type 53 231 -114 5 1667 349 310 78 60 chr3 141939134 141939481 -17660302 + L1_Mur3 LINE L1 5040 5392 -488 5 1667 450 0 0 0 chr3 141939994 141940044 -17659739 + (TG)n Simple_repeat Simple_repeat 2 51 0 5 1667 692 260 60 34 chr3 141940052 141940319 -17659464 - B4 SINE B4 -18 274 1 5 1667 225 192 162 14 chr3 141942287 141942361 -17657422 + Tigger13a DNA MER2_type 525 609 -162 5 1667 21 36 0 0 chr3 141943181 141943209 -17656574 + AT_rich Low_complexity Low_complexity 1 28 0 5 1667 229 333 67 0 chr3 141943413 141943488 -17656295 - ID4 SINE ID -2 81 2 5 1667 690 178 6 93 chr3 141945133 141945294 -17654489 + B1_Mur4 SINE Alu 2 148 -2 5 1667 1168 75 0 0 chr3 141945345 141945492 -17654291 + B1_Mm SINE Alu 1 147 0 5 1667 189 0 0 0 chr3 141945509 141945530 -17654253 + (A)n Simple_repeat Simple_repeat 1 21 0 5 1667 22 0 0 0 chr3 141947369 141947391 -17652392 + AT_rich Low_complexity Low_complexity 1 22 0 5 1667 391 321 68 37 chr3 141949352 141949543 -17650240 + MER58B DNA MER1_type 120 316 -25 5 1667 309 51 0 0 chr3 141949571 141949610 -17650173 + (AGGGGG)n Simple_repeat Simple_repeat 6 44 0 5 1667 348 161 0 0 chr3 141949610 141949672 -17650111 + A-rich Low_complexity Low_complexity 1 62 0 5 1667 2411 64 107 14 chr3 141949734 141950100 -17649683 + MTB LTR MaLR 1 400 0 5 1668 292 212 140 9 chr3 141951689 141951803 -17647980 - L1MB2 LINE L1 -3 6168 6040 5 1668 3656 157 40 65 chr3 141953092 141954172 -17645611 + RLTR13D1 LTR ERVK 1 1023 0 5 1668 353 157 86 43 chr3 141954705 141954798 -17644985 - MER2 DNA MER2_type -143 202 106 5 1668 282 364 84 58 chr3 141955708 141955982 -17643801 + B4 SINE B4 1 281 -11 5 1668 561 252 107 6 chr3 141956547 141956824 -17642959 + MTD LTR MaLR 50 405 -14 5 1668 641 245 132 8 chr3 141958428 141958671 -17641112 - B4A SINE B4 -19 273 1 5 1668 679 287 33 29 chr3 141959191 141959464 -17640319 - B4A SINE B4 -18 274 1 5 1668 378 107 0 0 chr3 141959795 141959851 -17639932 + (CACCAT)n Simple_repeat Simple_repeat 6 61 0 5 1668 214 345 0 0 chr3 141959904 141959959 -17639824 - ID4 SINE ID -4 79 25 5 1668 402 85 0 0 chr3 141960136 141960195 -17639588 + (CA)n Simple_repeat Simple_repeat 1 59 0 5 1668 2658 131 21 8 chr3 141960314 141960860 -17638923 + Lx3A LINE L1 5583 6110 -1586 6 1668 318 106 0 0 chr3 141960862 141960909 -17638874 + (GAAA)n Simple_repeat Simple_repeat 3 49 0 6 1668 6737 107 11 26 chr3 141960909 141961973 -17637810 + Lx3A LINE L1 5910 6957 -24 6 1668 423 353 61 24 chr3 141962565 141962777 -17637006 - LTR16A LTR ERVL -38 413 194 6 1668 432 0 0 0 chr3 141963899 141963947 -17635836 + (CA)n Simple_repeat Simple_repeat 2 49 0 6 1668 423 0 0 0 chr3 141965712 141965759 -17634024 + (TTTTG)n Simple_repeat Simple_repeat 5 51 0 6 1668 192 77 0 0 chr3 141967435 141967461 -17632322 + (A)n Simple_repeat Simple_repeat 1 26 0 6 1668 368 360 11 55 chr3 141968358 141968540 -17631243 - ID_B1 SINE B4 -3 221 48 6 1668 28 86 0 0 chr3 141968784 141968854 -17630929 + AT_rich Low_complexity Low_complexity 1 70 0 6 1668 1212 175 4 43 chr3 141970429 141970662 -17629121 - URR1B DNA MER1_type -1 224 1 6 1668 21 0 0 0 chr3 141974327 141974348 -17625435 + AT_rich Low_complexity Low_complexity 1 21 0 6 1668 1213 217 271 24 chr3 141976777 141977202 -17622581 + MT2A LTR ERVL 2 531 -2 6 1668 644 139 83 0 chr3 141977562 141977670 -17622113 - B1_Mus2 SINE Alu -6 141 25 6 1668 735 279 236 3 chr3 141978042 141978330 -17621453 + MTE2b LTR MaLR 20 374 -5 6 1668 28 0 0 0 chr3 141978983 141979011 -17620772 + AT_rich Low_complexity Low_complexity 1 28 0 6 1668 244 219 172 0 chr3 141979501 141979565 -17620218 + ID4_ SINE ID 3 77 -6 6 1668 1060 36 0 28 chr3 141981794 141981936 -17617847 + B1_Mus2 SINE Alu 1 138 -9 6 1668 269 26 26 0 chr3 141981936 141981974 -17617809 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 6 1668 1321 87 16 11 chr3 141982566 141982753 -17617030 + B2_Mm2 SINE B2 1 188 -7 6 1668 210 171 0 0 chr3 141983002 141983043 -17616740 + (TGGA)n Simple_repeat Simple_repeat 3 43 0 6 1668 465 66 0 0 chr3 141983779 141983840 -17615943 + (TG)n Simple_repeat Simple_repeat 1 61 0 6 1668 269 300 0 14 chr3 141983867 141983938 -17615845 - PB1D10 SINE Alu -36 81 12 6 1668 23 54 0 0 chr3 141987065 141987102 -17612681 + AT_rich Low_complexity Low_complexity 1 37 0 6 1668 581 148 74 0 chr3 141988033 141988141 -17611642 + Lx9 LINE L1 7360 7475 -169 6 1668 761 190 0 6 chr3 141988143 141988318 -17611465 + GA-rich Low_complexity Low_complexity 4 177 0 6 1668 502 189 16 24 chr3 141988320 141988445 -17611338 + Lx9 LINE L1 7520 7643 -1 6 1668 33 56 0 0 chr3 141989451 141989505 -17610278 + AT_rich Low_complexity Low_complexity 1 54 0 6 1668 4959 35 5 0 chr3 141989955 141990549 -17609234 - L1Md_T LINE L1 0 6582 5986 6 1668 441 356 22 18 chr3 141990868 141991140 -17608643 + B4A SINE B4 2 274 -18 6 1668 22 0 0 0 chr3 141991227 141991249 -17608534 + AT_rich Low_complexity Low_complexity 1 22 0 6 1668 459 0 0 0 chr3 141992469 141992520 -17607263 + (TTTTG)n Simple_repeat Simple_repeat 1 51 0 6 1668 337 203 0 14 chr3 141992526 141992596 -17607187 - ID4 SINE ID -9 74 6 6 1668 863 128 64 0 chr3 141992895 141993036 -17606747 - B1_Mur4 SINE Alu 0 150 1 6 1668 375 264 9 36 chr3 141993363 141993473 -17606310 + PB1D10 SINE Alu 2 108 -9 6 1668 31 0 0 0 chr3 141996252 141996283 -17603500 + AT_rich Low_complexity Low_complexity 1 31 0 6 1668 550 209 192 84 chr3 141996550 141996717 -17603066 + B3 SINE B2 27 211 -5 6 1668 1768 304 70 35 chr3 141996857 141997634 -17602149 - Lx8 LINE L1 -31 7442 6639 6 1668 228 197 161 62 chr3 141997690 141997715 -17602068 + MT2A LTR ERVL 3 34 -499 6 1668 237 65 0 0 chr3 141997715 141997746 -17602037 + (TATATG)n Simple_repeat Simple_repeat 2 32 0 6 1668 228 197 161 62 chr3 141997746 141997801 -17601982 + MT2A LTR ERVL 35 91 -442 6 1668 275 133 0 0 chr3 141997809 141997854 -17601929 + MT2A LTR ERVL 489 533 0 6 1668 243 118 0 0 chr3 141997854 141997888 -17601895 - Lx8 LINE L1 -1066 6407 6374 6 1668 290 312 52 0 chr3 141997902 141997979 -17601804 + ID4_ SINE ID 2 82 -1 6 1668 220 367 56 0 chr3 141997979 141997992 -17601791 + ID_B1 SINE B4 2 96 -128 6 1668 707 307 89 16 chr3 141998214 141998508 -17601275 + MTD LTR MaLR 23 352 -67 6 1668 298 325 62 61 chr3 141998855 141999048 -17600735 + MLT1D LTR MaLR 76 270 -197 6 1668 200 238 0 0 chr3 141999184 141999226 -17600557 + (TA)n Simple_repeat Simple_repeat 2 43 0 6 1668 606 215 0 40 chr3 141999226 141999376 -17600407 + L1MA8 LINE L1 5642 5785 -506 6 1668 275 277 62 0 chr3 141999415 141999480 -17600303 - ID4_ SINE ID -2 81 13 6 1668 969 82 0 0 chr3 141999618 141999752 -17600031 + B1_Mus1 SINE Alu 9 142 -6 6 1668 431 279 72 33 chr3 141999782 141999934 -17599849 + L1MA8 LINE L1 5971 6128 -163 6 1668 288 53 0 0 chr3 142000034 142000072 -17599711 + (TG)n Simple_repeat Simple_repeat 1 38 0 1 1668 912 317 7 3 chr3 142000083 142000371 -17599412 - B4A SINE B4 -1 291 3 2 1668 262 242 110 0 chr3 142000397 142000488 -17599295 + MLT1D LTR MaLR 400 500 -5 3 1668 1081 199 219 26 chr3 142000929 142001332 -17598451 - RMER13A LTR ERVK -356 552 3 4 1668 192 314 42 28 chr3 142002855 142002927 -17596856 + L2b LINE L2 3300 3372 -3 5 1668 182 324 127 42 chr3 142003205 142003347 -17596436 + MIRc SINE MIR 50 203 -65 6 1668 245 98 24 0 chr3 142003420 142003461 -17596322 + (TTTA)n Simple_repeat Simple_repeat 3 44 0 7 1668 1122 51 0 0 chr3 142004886 142005023 -17594760 + B1_Mus2 SINE Alu 1 137 -10 8 1668 284 64 0 21 chr3 142005023 142005071 -17594712 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 9 1668 909 116 0 0 chr3 142006320 142006449 -17593334 + B2_Mm2 SINE B2 30 158 -37 1 1668 212 31 62 0 chr3 142006450 142006482 -17593301 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 1 1668 439 90 0 0 chr3 142007057 142007124 -17592659 + L1_Mus3 LINE L1 6563 6629 -9 1 1668 432 0 0 0 chr3 142007941 142007989 -17591794 + (TTTA)n Simple_repeat Simple_repeat 2 49 0 1 1668 1120 71 0 0 chr3 142007991 142008132 -17591651 - B1_Mm SINE Alu -6 141 1 1 1668 276 319 53 0 chr3 142009579 142009673 -17590110 - MIR SINE MIR -63 145 47 1 1668 24 91 0 0 chr3 142010183 142010249 -17589534 + AT_rich Low_complexity Low_complexity 1 66 0 1 1668 225 0 0 0 chr3 142010328 142010353 -17589430 + (CA)n Simple_repeat Simple_repeat 1 25 0 1 1668 350 304 125 53 chr3 142010531 142010892 -17588891 + L2a LINE L2 3032 3418 -8 1 1668 974 136 216 5 chr3 142011028 142011213 -17588570 + URR1A DNA MER1_type 1 224 -2 1 1668 1913 151 55 3 chr3 142011522 142011834 -17587949 + ORR1B2 LTR MaLR 1 328 -39 2 1668 1036 205 126 7 chr3 142011865 142012135 -17587648 + MTD LTR MaLR 118 419 0 2 1668 300 343 59 39 chr3 142012519 142012774 -17587009 + LTR16A1 LTR ERVL 197 456 0 2 1668 245 381 23 104 chr3 142013091 142013311 -17586472 + B4 SINE B4 2 203 -89 2 1668 225 0 0 0 chr3 142013337 142013362 -17586421 + (CA)n Simple_repeat Simple_repeat 2 26 0 2 1668 189 68 0 64 chr3 142014589 142014636 -17585147 + (TTTTTA)n Simple_repeat Simple_repeat 2 45 0 2 1668 1111 71 25 25 chr3 142015121 142015279 -17584504 + B2_Mm1t SINE B2 35 192 -1 2 1668 1016 95 0 13 chr3 142015279 142015428 -17584355 + B1_Mm SINE Alu 1 147 0 2 1668 272 291 47 37 chr3 142016730 142016837 -17582946 + L1MB4 LINE L1 6024 6131 -49 2 1668 375 244 23 0 chr3 142018655 142018741 -17581042 - Lx8 LINE L1 -1089 6384 6297 2 1668 773 307 77 30 chr3 142018801 142019231 -17580552 - Lx8 LINE L1 -1322 6151 5702 2 1668 534 242 42 0 chr3 142019233 142019353 -17580430 + Lx8 LINE L1 6379 6503 -970 3 1668 297 319 11 0 chr3 142019444 142019538 -17580245 + Lx9 LINE L1 6658 6752 -892 3 1668 1436 125 42 0 chr3 142020902 142021118 -17578665 + URR1B DNA MER1_type 1 225 0 3 1668 183 42 0 0 chr3 142021136 142021160 -17578623 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 3 1668 290 313 20 10 chr3 142021759 142021859 -17577924 + MTEa LTR MaLR 277 377 -2 3 1668 29 0 0 0 chr3 142022553 142022582 -17577201 + AT_rich Low_complexity Low_complexity 1 29 0 3 1668 537 16 0 0 chr3 142023333 142023395 -17576388 + (CA)n Simple_repeat Simple_repeat 2 63 0 3 1668 186 224 97 69 chr3 142023790 142023862 -17575921 + MIR SINE MIR 42 115 -93 3 1668 472 265 14 88 chr3 142024194 142024378 -17575405 + B1_Mur2 SINE Alu 1 149 0 3 1668 180 0 0 0 chr3 142024389 142024409 -17575374 + (CAAAAA)n Simple_repeat Simple_repeat 2 21 0 3 1668 26 30 0 0 chr3 142024749 142024782 -17575001 + AT_rich Low_complexity Low_complexity 1 33 0 4 1668 278 266 47 0 chr3 142024928 142024992 -17574791 - L2a LINE L2 -12 3414 3348 4 1668 560 249 69 37 chr3 142025143 142025375 -17574408 + B4A SINE B4 1 234 -58 4 1668 244 243 123 41 chr3 142026446 142026519 -17573264 + MTEb LTR MaLR 2 80 -299 4 1668 738 278 164 30 chr3 142027032 142027263 -17572520 + Lx8 LINE L1 7091 7358 -115 4 1668 1155 68 0 7 chr3 142027263 142027400 -17572383 + B1_Mus1 SINE Alu 1 137 -11 4 1668 963 106 0 0 chr3 142027400 142027542 -17572241 + (GAAA)n Simple_repeat Simple_repeat 3 144 0 4 1668 1155 68 0 7 chr3 142027542 142027553 -17572230 + B1_Mus1 SINE Alu 138 148 0 4 1668 738 278 164 30 chr3 142027553 142027651 -17572132 + Lx8 LINE L1 7359 7464 -9 4 1668 1064 328 73 36 chr3 142027749 142028160 -17571623 + MER21B LTR ERV1 1 426 -437 4 1668 749 310 76 77 chr3 142028180 142028782 -17571001 + RLTR18 LTR ERVK 33 528 -88 4 1668 764 328 76 0 chr3 142028856 142029106 -17570677 + MER21B LTR ERV1 520 788 -75 4 1668 27 0 0 0 chr3 142029666 142029693 -17570090 + AT_rich Low_complexity Low_complexity 1 27 0 4 1668 426 113 0 0 chr3 142030124 142030195 -17569588 + L1_Mus2 LINE L1 6496 6566 0 5 1668 186 43 0 0 chr3 142030204 142030227 -17569556 + (AAATG)n Simple_repeat Simple_repeat 3 25 0 5 1668 367 155 0 30 chr3 142030680 142030780 -17569003 + (TAAA)n Simple_repeat Simple_repeat 4 100 0 5 1668 700 307 24 35 chr3 142031481 142031768 -17568015 + B4A SINE B4 3 286 -6 5 1668 563 274 52 47 chr3 142031973 142032184 -17567599 + B3 SINE B2 5 216 0 5 1668 351 0 0 0 chr3 142032221 142032260 -17567523 + (CA)n Simple_repeat Simple_repeat 1 39 0 5 1668 341 219 124 10 chr3 142032289 142032382 -17567401 - Tigger9b DNA MER2_type -241 383 280 5 1668 249 252 105 19 chr3 142032382 142032487 -17567296 + PB1D10 SINE Alu 2 115 -2 5 1668 300 301 39 0 chr3 142032608 142032711 -17567072 + L1MA7 LINE L1 6173 6279 -12 5 1668 560 351 63 32 chr3 142033219 142033566 -17566217 + ORR1E LTR MaLR 2 359 0 5 1668 315 142 17 58 chr3 142033630 142033750 -17566033 + T-rich Low_complexity Low_complexity 6 120 0 6 1668 1209 55 0 0 chr3 142033750 142033896 -17565887 - B1_Mm SINE Alu 0 147 2 6 1668 1133 61 0 13 chr3 142034945 142035083 -17564700 + B1_Mus1 SINE Alu 1 137 -11 6 1668 1148 94 12 0 chr3 142035083 142035254 -17564529 + (GAAA)n Simple_repeat Simple_repeat 4 176 0 6 1668 1133 61 0 13 chr3 142035254 142035265 -17564518 + B1_Mus1 SINE Alu 138 148 0 6 1668 21 0 0 0 chr3 142035282 142035303 -17564480 + AT_rich Low_complexity Low_complexity 1 21 0 6 1668 183 80 0 0 chr3 142036191 142036216 -17563567 + (A)n Simple_repeat Simple_repeat 1 25 0 6 1668 186 43 0 0 chr3 142036395 142036418 -17563365 + (GA)n Simple_repeat Simple_repeat 2 24 0 6 1668 223 189 75 0 chr3 142036908 142036961 -17562822 + B1F SINE Alu 9 65 -84 6 1668 338 192 17 147 chr3 142036951 142037067 -17562716 + B4A SINE B4 192 292 0 6 1668 672 232 0 14 chr3 142037946 142038086 -17561697 + B1_Mur1 SINE Alu 3 140 -9 6 1668 1156 75 0 0 chr3 142040094 142040241 -17559542 + B1_Mus2 SINE Alu 1 147 0 7 1668 26 0 0 0 chr3 142040241 142040267 -17559516 + AT_rich Low_complexity Low_complexity 1 26 0 7 1668 263 28 28 0 chr3 142040542 142040578 -17559205 + (TG)n Simple_repeat Simple_repeat 2 38 0 7 1668 1154 191 19 0 chr3 142040681 142040891 -17558892 - B3 SINE B2 -2 214 1 7 1668 1082 75 7 0 chr3 142040949 142041095 -17558688 - B1_Mus1 SINE Alu 0 148 2 7 1668 840 236 105 57 chr3 142041316 142041630 -17558153 + Lx3C LINE L1 6645 6973 -3 7 1668 22 0 0 0 chr3 142041705 142041727 -17558056 + AT_rich Low_complexity Low_complexity 1 22 0 7 1668 558 196 10 57 chr3 142041739 142041896 -17557887 + B3 SINE B2 1 153 -45 7 1668 302 315 201 8 chr3 142041923 142042157 -17557626 + L2a LINE L2 3148 3426 0 7 1668 459 224 70 23 chr3 142042886 142043014 -17556769 + RSINE1 SINE B4 1 134 -31 7 1668 466 259 22 22 chr3 142044335 142044469 -17555314 + ID_B1 SINE B4 91 224 0 8 1668 190 330 54 21 chr3 142045067 142045160 -17554623 + L2b LINE L2 2940 3035 -340 8 1668 749 223 0 33 chr3 142045943 142046096 -17553687 - B1_Mur1 SINE Alu 0 149 2 8 1668 348 325 91 58 chr3 142046151 142046393 -17553390 + MIR SINE MIR 5 254 -8 8 1668 495 138 0 0 chr3 142047686 142047773 -17552010 + (TG)n Simple_repeat Simple_repeat 2 88 0 8 1668 201 224 0 0 chr3 142047826 142047884 -17551899 + (TG)n Simple_repeat Simple_repeat 1 58 0 8 1668 893 273 38 45 chr3 142048181 142048469 -17551314 + B4A SINE B4 7 292 0 8 1668 510 46 0 0 chr3 142048470 142048535 -17551248 + (CA)n Simple_repeat Simple_repeat 2 66 0 8 1668 202 56 27 27 chr3 142048583 142048620 -17551163 + (GAAA)n Simple_repeat Simple_repeat 4 40 0 8 1668 262 265 35 35 chr3 142048928 142049014 -17550769 + L1MC LINE L1 5575 5660 -2222 8 1668 396 0 0 0 chr3 142049037 142049081 -17550702 + (TG)n Simple_repeat Simple_repeat 2 45 0 8 1668 806 242 91 0 chr3 142049839 142050037 -17549746 + B3 SINE B2 1 216 0 9 1668 702 133 0 0 chr3 142050119 142050232 -17549551 + (CATATA)n Simple_repeat Simple_repeat 5 117 0 9 1668 225 0 0 0 chr3 142050600 142050625 -17549158 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 9 1668 329 117 17 0 chr3 142052770 142052830 -17546953 + (TTTC)n Simple_repeat Simple_repeat 3 63 0 9 1668 26 30 0 0 chr3 142052929 142052962 -17546821 + AT_rich Low_complexity Low_complexity 1 33 0 9 1668 213 108 0 0 chr3 142053631 142053668 -17546115 + (CA)n Simple_repeat Simple_repeat 2 38 0 9 1668 708 205 8 0 chr3 142053772 142053894 -17545889 + B1F2 SINE Alu 3 125 -24 9 1668 540 97 0 0 chr3 142053947 142054040 -17545743 + (CA)n Simple_repeat Simple_repeat 2 94 0 9 1668 1456 101 3 122 chr3 142056027 142056331 -17543452 - Lx3A LINE L1 -5 6976 6709 9 1668 342 286 0 0 chr3 142056510 142056580 -17543203 + ID4_ SINE ID 2 71 -12 9 1668 22 35 0 0 chr3 142058346 142058375 -17541408 + GC_rich Low_complexity Low_complexity 1 29 0 1 1668 294 238 286 0 chr3 142059443 142059590 -17540193 + Charlie5 DNA MER1_type 5 193 -2431 1 1668 22 35 0 0 chr3 142059632 142059661 -17540122 + AT_rich Low_complexity Low_complexity 1 29 0 1 1668 400 360 0 11 chr3 142060600 142060780 -17539003 + HAL1-2a_MD LINE L1 2333 2510 -514 1 1668 3829 189 64 13 chr3 142060991 142061784 -17537999 + Lx9 LINE L1 6631 7464 -180 1 1668 24 53 0 0 chr3 142061812 142061850 -17537933 + AT_rich Low_complexity Low_complexity 1 38 0 1 1668 245 215 92 0 chr3 142061885 142061950 -17537833 + Lx8 LINE L1 7401 7471 -2 1 1668 227 342 129 39 chr3 142062158 142062313 -17537470 - MamSINE1 SINE tRNA -19 271 103 1 1668 2587 66 12 25 chr3 142063784 142064109 -17535674 + L1_Mus1 LINE L1 6247 6567 0 1 1668 3649 267 65 126 chr3 142064688 142065134 -17534649 + L1_Mur3 LINE L1 1727 2133 -3744 1 1668 642 156 0 0 chr3 142065134 142065230 -17534553 + B1_Mur2 SINE Alu 13 108 -41 1 1668 249 215 34 102 chr3 142065161 142065249 -17534534 + RLTR25B LTR ERVK 441 522 -506 1 1668 3649 267 65 126 chr3 142065249 142065327 -17534456 + L1_Mur3 LINE L1 2134 2206 -3671 1 1668 270 0 0 0 chr3 142065327 142065357 -17534426 + (TTG)n Simple_repeat Simple_repeat 1 30 0 1 1668 3649 216 84 21 chr3 142065357 142066205 -17533578 + L1_Mur3 LINE L1 2204 3092 -2788 1 1668 1823 16 0 0 chr3 142066205 142066397 -17533386 + B2_Mm1a SINE B2 1 192 -1 1 1668 3649 216 84 21 chr3 142066397 142066525 -17533258 + L1_Mur3 LINE L1 3093 3231 -2649 1 1668 408 160 0 0 chr3 142066525 142066625 -17533158 + (TAGA)n Simple_repeat Simple_repeat 1 100 0 1 1668 364 230 110 0 chr3 142066628 142066728 -17533055 + L1_Rod LINE L1 3239 3349 -2498 1 1668 338 288 0 0 chr3 142066729 142066809 -17532974 + L1VL1 LINE L1 194 273 -6149 1 1668 23034 101 30 1 chr3 142066827 142070975 -17528808 + L1_Mus3 LINE L1 2357 6631 -7 1 1668 7056 193 44 15 chr3 142070955 142071129 -17528654 + L1_Mur3 LINE L1 3308 3485 -2395 1 1668 225 0 0 0 chr3 142071129 142071154 -17528629 + (CAAA)n Simple_repeat Simple_repeat 1 25 0 1 1668 7056 193 44 15 chr3 142071154 142071354 -17528429 + L1_Mur3 LINE L1 3486 3683 -2197 1 1668 1273 54 0 13 chr3 142071354 142071504 -17528279 + B1_Mus1 SINE Alu 1 148 0 1 1668 7056 193 44 15 chr3 142071504 142072676 -17527107 + L1_Mur3 LINE L1 3684 4900 -980 1 1668 663 46 0 0 chr3 142072744 142072831 -17526952 + (TG)n Simple_repeat Simple_repeat 2 88 0 1 1668 2140 312 38 16 chr3 142072871 142073613 -17526170 + Lx8 LINE L1 6567 7324 -149 1 1668 312 176 21 21 chr3 142073642 142073735 -17526048 + GA-rich Low_complexity Low_complexity 2 94 0 1 1668 227 237 51 38 chr3 142074294 142074373 -17525410 - L1MC5 LINE L1 -56 7905 7826 1 1668 23 54 0 0 chr3 142074379 142074416 -17525367 + AT_rich Low_complexity Low_complexity 1 37 0 1 1668 243 283 95 48 chr3 142075540 142075572 -17524211 + RMER4A LTR ERVK 309 337 -129 1 1668 1257 90 0 0 chr3 142075572 142075749 -17524034 + (TTC)n Simple_repeat Simple_repeat 1 177 0 1 1668 243 283 95 48 chr3 142075749 142075842 -17523941 + RMER4A LTR ERVK 338 440 -26 1 1668 24 53 0 0 chr3 142078117 142078155 -17521628 + AT_rich Low_complexity Low_complexity 1 38 0 1 1668 286 271 33 3 chr3 142078394 142078493 -17521290 - MIRc SINE MIR -166 110 3 1 1668 291 0 102 0 chr3 142078804 142078853 -17520930 + (TTTTG)n Simple_repeat Simple_repeat 2 55 0 1 1668 432 55 0 0 chr3 142078990 142079045 -17520738 + (TG)n Simple_repeat Simple_repeat 2 56 0 1 1668 520 237 58 25 chr3 142079057 142079178 -17520605 - RSINE1 SINE B4 -38 127 3 1 1668 27 29 0 0 chr3 142079347 142079381 -17520402 + AT_rich Low_complexity Low_complexity 1 34 0 1 1668 3563 239 107 35 chr3 142079533 142080612 -17519171 - Lx8 LINE L1 -2 7471 6316 1 1668 372 22 0 0 chr3 142081013 142081058 -17518725 + (TG)n Simple_repeat Simple_repeat 1 45 0 1 1668 659 318 15 5 chr3 142081081 142081277 -17518506 - B4A SINE B4 -6 286 89 1 1668 477 0 0 0 chr3 142081504 142081557 -17518226 + (TG)n Simple_repeat Simple_repeat 2 54 0 1 1668 280 304 0 0 chr3 142081557 142081626 -17518157 - ID4_ SINE ID -14 69 1 1 208 823 265 23 14 chr3 142081843 142082057 -17517726 - B3 SINE B2 0 216 1 1 1669 248 304 88 0 chr3 142082305 142082407 -17517376 + L2a LINE L2 3291 3401 -25 1 1669 610 276 81 64 chr3 142082502 142082800 -17516983 - L1MA10 LINE L1 -41 6293 5991 1 1669 558 221 125 8 chr3 142083233 142083361 -17516422 - B1F SINE Alu -5 144 2 1 1669 489 152 0 0 chr3 142083474 142083579 -17516204 + (TCTG)n Simple_repeat Simple_repeat 2 106 0 1 1669 918 101 0 0 chr3 142083942 142084091 -17515692 + (TCTA)n Simple_repeat Simple_repeat 2 150 0 1 1669 1024 170 176 0 chr3 142084096 142084284 -17515499 + URR1B DNA MER1_type 5 225 0 1 1669 360 148 0 0 chr3 142085855 142085916 -17513867 + (TTCA)n Simple_repeat Simple_repeat 3 63 0 1 1669 318 324 27 46 chr3 142087411 142087554 -17512229 - B4 SINE B4 -78 146 12 1 1669 365 258 30 59 chr3 142087665 142087867 -17511916 - L1MEc LINE L1 -4600 1815 1620 1 1669 221 238 0 0 chr3 142087867 142087909 -17511874 + PB1D7 SINE Alu 23 64 -56 1 1669 470 207 26 43 chr3 142088105 142088221 -17511562 - PB1D10 SINE Alu 0 117 4 1 1669 391 252 54 67 chr3 142088470 142088619 -17511164 + ID_B1 SINE B4 70 216 -8 1 1669 572 252 164 72 chr3 142088701 142088715 -17511068 - L1MEc LINE L1 -5211 1189 1177 1 1669 5278 52 5 2 chr3 142088715 142089330 -17510453 + L1_Mus1 LINE L1 5951 6567 0 1 1669 572 252 164 72 chr3 142089330 142090136 -17509647 - L1MEc LINE L1 -5224 1176 293 1 1669 306 129 0 0 chr3 142090898 142090960 -17508823 + (CA)n Simple_repeat Simple_repeat 1 62 0 1 1669 228 221 79 34 chr3 142091350 142091439 -17508344 - Lx8 LINE L1 -28 7445 7353 1 1669 1886 264 81 20 chr3 142091462 142091539 -17508244 - Lx7 LINE L1 -287 7409 7306 1 1669 276 30 0 0 chr3 142091539 142091572 -17508211 + (CA)n Simple_repeat Simple_repeat 2 34 0 1 1669 270 0 0 0 chr3 142091572 142091601 -17508182 + (GA)n Simple_repeat Simple_repeat 2 31 0 1 1669 1886 264 81 20 chr3 142091601 142092078 -17507705 - Lx7 LINE L1 -391 7305 6821 1 1669 207 0 0 0 chr3 142093607 142093630 -17506153 + (CA)n Simple_repeat Simple_repeat 2 24 0 1 1669 484 271 131 124 chr3 142094485 142094767 -17505016 - B4A SINE B4 -8 284 1 1 1669 311 109 0 0 chr3 142095222 142095268 -17504515 + Lx2 LINE L1 6589 6634 -363 1 1669 1864 98 15 11 chr3 142095268 142095537 -17504246 + Lx LINE L1 6383 6652 -2 1 1669 516 32 0 0 chr3 142095561 142095623 -17504160 + (GA)n Simple_repeat Simple_repeat 2 63 0 1 1669 933 35 0 0 chr3 142095623 142095736 -17504047 + (GGAA)n Simple_repeat Simple_repeat 4 116 0 1 1669 248 0 0 30 chr3 142095914 142095947 -17503836 + (CAAAAA)n Simple_repeat Simple_repeat 3 34 0 1 1669 739 259 21 0 chr3 142095977 142096120 -17503663 + RSINE1 SINE B4 3 148 -17 1 1669 420 171 51 0 chr3 142096120 142096237 -17503546 + CT-rich Low_complexity Low_complexity 2 124 0 1 1669 972 289 22 75 chr3 142096704 142097075 -17502708 + MTE2b LTR MaLR 21 371 -8 1 1669 1099 280 146 2 chr3 142097087 142097499 -17502284 - MLT2B4 LTR ERVL -54 502 32 1 1669 235 320 0 0 chr3 142097578 142097653 -17502130 + MIR SINE MIR 28 102 -160 1 1669 355 243 15 135 chr3 142098126 142098259 -17501524 - PB1D10 SINE Alu 0 117 1 1 1669 221 260 0 94 chr3 142098487 142098572 -17501211 + MIR SINE MIR 145 221 -41 1 1669 234 128 0 0 chr3 142098637 142098676 -17501107 + (TTTA)n Simple_repeat Simple_repeat 3 41 0 1 1669 560 220 0 35 chr3 142098678 142098791 -17500992 - B1_Mur1 SINE Alu -8 141 33 1 1669 1316 25 0 0 chr3 142101818 142101977 -17497806 + B2_Mm1a SINE B2 2 160 -33 1 1669 342 0 0 0 chr3 142101977 142102015 -17497768 + (TAAA)n Simple_repeat Simple_repeat 3 40 0 1 1669 324 0 0 0 chr3 142103061 142103097 -17496686 + (CA)n Simple_repeat Simple_repeat 2 37 0 1 1669 1251 101 60 5 chr3 142106712 142106911 -17492872 - Lx2 LINE L1 -13 6984 6775 1 1669 3536 100 2 8 chr3 142106909 142107413 -17492370 - Lx2 LINE L1 -352 6645 6145 1 1669 3197 89 42 0 chr3 142107417 142107995 -17491788 + L1_Mus3 LINE L1 5405 6010 -628 1 1669 627 221 101 80 chr3 142108209 142108549 -17491234 + MT2B LTR ERVL 47 524 -77 1 1669 950 149 0 13 chr3 142108593 142108743 -17491040 + MTC LTR MaLR 274 421 0 1 1669 681 171 5 36 chr3 142109901 142110125 -17489658 + (TATG)n Simple_repeat Simple_repeat 1 216 0 1 1669 762 240 7 0 chr3 142111295 142111441 -17488342 - B1_Mur1 SINE Alu -2 147 1 1 1669 240 370 10 39 chr3 142111508 142111612 -17488171 + Tigger5 DNA MER2_type 2293 2393 -13 1 1669 885 223 65 5 chr3 142111630 142111815 -17487968 + B3 SINE B2 5 200 -16 1 1669 636 241 18 12 chr3 142112643 142112811 -17486972 + B3A SINE B2 4 172 -26 1 1669 3141 266 133 24 chr3 142112872 142113491 -17486292 - Lx8 LINE L1 -8 7465 6810 1 1669 684 0 0 0 chr3 142113491 142113567 -17486216 + (TA)n Simple_repeat Simple_repeat 1 76 0 1 1669 3141 266 133 24 chr3 142113567 142114093 -17485690 - Lx8 LINE L1 -664 6809 6197 1 1669 201 147 0 0 chr3 142114149 142114183 -17485600 + (CA)n Simple_repeat Simple_repeat 1 34 0 1 1669 335 267 27 0 chr3 142114192 142114267 -17485516 - RSINE1 SINE B4 -33 132 56 1 1669 626 301 0 5 chr3 142115777 142115964 -17483819 + B3A SINE B2 7 192 -6 1 1669 1613 290 62 59 chr3 142115981 142116037 -17483746 + Lx8 LINE L1 6563 6605 -868 1 1669 1632 21 27 0 chr3 142116037 142116223 -17483560 - B2_Mm1t SINE B2 -1 192 2 1 1669 1613 290 62 59 chr3 142116223 142116826 -17482957 + Lx8 LINE L1 6606 7224 -249 1 1669 222 208 38 0 chr3 142116948 142117001 -17482782 - ID4_ SINE ID -27 56 2 1 1669 1079 84 0 0 chr3 142117476 142117611 -17482172 + B1_Mus1 SINE Alu 1 135 -13 1 1669 397 0 38 0 chr3 142117611 142117664 -17482119 + (CAAAA)n Simple_repeat Simple_repeat 1 55 0 1 1669 26 30 0 0 chr3 142117733 142117766 -17482017 + AT_rich Low_complexity Low_complexity 1 33 0 1 1669 637 235 8 0 chr3 142118093 142118225 -17481558 - RSINE1 SINE B4 -31 134 2 1 1669 636 343 41 47 chr3 142118729 142119093 -17480690 - LTR40b LTR ERVL -14 448 87 1 1669 874 256 109 60 chr3 142119529 142119878 -17479905 + ORR1D2 LTR MaLR 1 366 -4 1 1669 558 0 0 0 chr3 142120134 142120196 -17479587 + (TA)n Simple_repeat Simple_repeat 2 63 0 1 1669 2996 77 37 13 chr3 142120332 142120791 -17478992 - RLTR13D5 LTR ERVK 0 1033 564 1 1669 1337 36 0 6 chr3 142120794 142120902 -17478881 + (TTC)n Simple_repeat Simple_repeat 1 108 0 2 1669 1550 0 0 16 chr3 142120902 142121085 -17478698 + (TTCTCC)n Simple_repeat Simple_repeat 1 180 0 2 1669 1337 36 0 6 chr3 142121085 142121144 -17478639 + (TTC)n Simple_repeat Simple_repeat 2 60 0 2 1669 1041 123 0 0 chr3 142121148 142121294 -17478489 - B1_Mus2 SINE Alu 0 147 2 2 1669 3607 86 15 2 chr3 142121295 142121820 -17477963 - RLTR13D5 LTR ERVK -491 532 1 1 1669 452 326 61 47 chr3 142122277 142122637 -17477146 - L3b LINE CR1 -94 388 24 2 1669 23 54 0 0 chr3 142123774 142123811 -17475972 + AT_rich Low_complexity Low_complexity 1 37 0 2 1669 425 87 0 20 chr3 142124038 142124110 -17475673 - Lx4B LINE L1 -1229 5829 5731 2 1669 4919 203 75 10 chr3 142124109 142125196 -17474587 + Lx2B LINE L1 5841 6997 -3 2 1669 607 252 46 0 chr3 142125236 142125367 -17474416 + B1_Mur1 SINE Alu 6 142 -7 2 1669 304 234 52 0 chr3 142125646 142125723 -17474060 + ORR1E LTR MaLR 22 102 -257 2 1669 255 339 8 0 chr3 142126079 142126200 -17473583 - L2 LINE L2 -2468 951 830 2 1669 446 367 86 24 chr3 142126279 142126698 -17473085 - Charlie2a DNA MER1_type -2353 508 64 2 1669 569 350 77 34 chr3 142127573 142127898 -17471885 - MLT1A0 LTR MaLR -8 357 19 2 1669 437 147 9 0 chr3 142127995 142128104 -17471679 + (CA)n Simple_repeat Simple_repeat 1 110 0 2 1669 821 122 18 35 chr3 142128107 142128454 -17471329 + (CAGAGA)n Simple_repeat Simple_repeat 1 340 0 2 1669 701 271 162 8 chr3 142128454 142128688 -17471095 - B4A SINE B4 -21 271 2 2 1669 416 299 25 31 chr3 142128712 142128871 -17470912 - Lx9 LINE L1 -407 7237 7080 2 1669 456 280 31 23 chr3 142129858 142129986 -17469797 + RSINE1 SINE B4 4 132 -33 2 1669 186 133 0 0 chr3 142130289 142130319 -17469464 + (TC)n Simple_repeat Simple_repeat 1 30 0 2 1669 1187 100 0 11 chr3 142130319 142130501 -17469282 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 2 1669 1543 94 68 4 chr3 142130504 142130614 -17469169 - Lx2 LINE L1 -5 6992 6884 2 1669 189 0 0 0 chr3 142130614 142130635 -17469148 + (CCCA)n Simple_repeat Simple_repeat 1 21 0 2 1669 1543 94 68 4 chr3 142130635 142130758 -17469025 - Lx2 LINE L1 -114 6883 6745 2 1669 326 269 30 37 chr3 142131447 142131582 -17468201 + RSINE1 SINE B4 4 137 -28 2 1669 519 17 0 0 chr3 142131591 142131651 -17468132 + (TC)n Simple_repeat Simple_repeat 1 60 0 2 1669 261 0 0 0 chr3 142131651 142131679 -17468104 + (CA)n Simple_repeat Simple_repeat 1 29 0 2 1669 288 77 0 0 chr3 142131920 142131959 -17467824 + (CA)n Simple_repeat Simple_repeat 2 40 0 2 1669 268 309 128 14 chr3 142132895 142133036 -17466747 + RSINE1 SINE B4 1 157 -8 2 1669 204 125 0 0 chr3 142133036 142133068 -17466715 + (CAT)n Simple_repeat Simple_repeat 1 32 0 2 1669 956 219 37 0 chr3 142133268 142133455 -17466328 + B3 SINE B2 3 196 -20 2 1669 217 226 0 31 chr3 142133634 142133698 -17466085 + (TATG)n Simple_repeat Simple_repeat 3 64 0 2 1669 301 307 276 0 chr3 142133698 142133825 -17465958 - B4A SINE B4 -2 290 129 2 1669 318 245 117 0 chr3 142134231 142134325 -17465458 + ID_B1 SINE B4 84 188 -36 2 1669 227 173 0 19 chr3 142134346 142134399 -17465384 + (CAAAG)n Simple_repeat Simple_repeat 4 55 0 2 1669 186 43 0 0 chr3 142134412 142134435 -17465348 + (CAA)n Simple_repeat Simple_repeat 2 24 0 2 1669 221 0 0 33 chr3 142135524 142135554 -17464229 + (TTA)n Simple_repeat Simple_repeat 1 29 0 2 1669 273 294 106 21 chr3 142135558 142135652 -17464131 - B1F SINE Alu -7 142 41 2 1669 324 0 0 0 chr3 142135737 142135773 -17464010 + (TC)n Simple_repeat Simple_repeat 1 36 0 2 1669 360 0 0 0 chr3 142135773 142135812 -17463971 + (CA)n Simple_repeat Simple_repeat 1 40 0 2 1669 396 147 0 0 chr3 142136356 142136431 -17463352 + (TGAA)n Simple_repeat Simple_repeat 2 76 0 2 1669 215 274 147 0 chr3 142136792 142136887 -17462896 + MIRb SINE MIR 40 148 -120 2 1669 1567 176 168 30 chr3 142137710 142137875 -17461908 + MTC LTR MaLR 1 193 -228 2 1669 207 0 0 0 chr3 142137875 142137898 -17461885 + (TTG)n Simple_repeat Simple_repeat 2 24 0 2 1669 5434 30 0 0 chr3 142137898 142138527 -17461256 - L1Md_F3 LINE L1 -17 6567 5939 2 1669 1567 176 168 30 chr3 142138527 142138730 -17461053 + MTC LTR MaLR 194 420 -1 2 1669 456 51 0 0 chr3 142139768 142139827 -17459956 + (CA)n Simple_repeat Simple_repeat 2 60 0 2 1669 648 75 11 0 chr3 142140426 142140520 -17459263 + RLTR31A_Mm LTR ERVK 2 96 -488 2 1669 1199 193 28 74 chr3 142140763 142141125 -17458658 + RLTR31A_Mm LTR ERVK 160 559 -2 2 1669 288 111 0 0 chr3 142141634 142141688 -17458095 + (TG)n Simple_repeat Simple_repeat 2 55 0 2 1669 13773 159 34 72 chr3 142142355 142149013 -17450770 + Lx2A LINE L1 854 7007 -1 2 1669 538 145 49 28 chr3 142149011 142149153 -17450630 + Lx5 LINE L1 1905 2049 -3828 2 1669 329 86 17 0 chr3 142149181 142149239 -17450544 + (CA)n Simple_repeat Simple_repeat 1 59 0 2 1669 395 132 0 26 chr3 142149236 142149314 -17450469 + (CCA)n Simple_repeat Simple_repeat 2 77 0 2 1669 18478 179 56 46 chr3 142149316 142154270 -17445513 + Lx5 LINE L1 2058 7056 -2 2 1669 354 339 121 5 chr3 142154767 142154957 -17444826 - MER58A DNA MER1_type -10 214 3 2 1669 1502 140 140 0 chr3 142155244 142155544 -17444239 + RMER6C LTR ERVK 3 344 -346 2 1669 402 100 0 0 chr3 142156682 142156742 -17443041 + (TG)n Simple_repeat Simple_repeat 2 61 0 2 1669 387 0 0 0 chr3 142157155 142157198 -17442585 + (CA)n Simple_repeat Simple_repeat 2 44 0 2 1669 500 296 15 6 chr3 142157466 142157628 -17442155 - B4A SINE B4 -60 164 1 2 1669 237 33 0 0 chr3 142158604 142158634 -17441149 + (CCAA)n Simple_repeat Simple_repeat 2 31 0 2 1669 558 0 0 0 chr3 142160462 142160524 -17439259 + (GA)n Simple_repeat Simple_repeat 1 62 0 2 1669 696 56 0 0 chr3 142160926 142161015 -17438768 + (TTCTC)n Simple_repeat Simple_repeat 4 92 0 2 1669 536 224 26 8 chr3 142161055 142161172 -17438611 - B3A SINE B2 -78 120 2 2 1669 338 188 25 0 chr3 142161340 142161420 -17438363 + (TATATG)n Simple_repeat Simple_repeat 1 82 0 2 1669 962 229 10 0 chr3 142161420 142161621 -17438162 - B3 SINE B2 -13 203 1 2 1669 1147 61 0 39 chr3 142162364 142162517 -17437266 + B1_Mm SINE Alu 1 147 0 2 1669 186 43 0 0 chr3 142162517 142162540 -17437243 + (A)n Simple_repeat Simple_repeat 1 23 0 2 1669 267 122 0 0 chr3 142163191 142163240 -17436543 + (T)n Simple_repeat Simple_repeat 1 49 0 2 1669 1281 20 0 0 chr3 142163240 142163386 -17436397 - B1_Mus2 SINE Alu 0 147 2 2 1669 234 0 0 0 chr3 142163868 142163894 -17435889 + (TC)n Simple_repeat Simple_repeat 2 27 0 2 1669 1836 132 105 31 chr3 142164471 142164654 -17435129 - RMER17C LTR ERVK 0 410 214 2 1669 609 14 0 0 chr3 142164654 142164724 -17435059 + (GA)n Simple_repeat Simple_repeat 1 70 0 2 1669 1836 132 105 31 chr3 142164724 142164922 -17434861 - RMER17C LTR ERVK -197 213 1 2 1669 235 273 136 28 chr3 142165250 142165422 -17434361 - MER63A DNA AcHobo -8 202 7 2 1669 264 59 0 0 chr3 142165462 142165496 -17434287 + (TTTG)n Simple_repeat Simple_repeat 3 36 0 2 1669 21 36 0 0 chr3 142165710 142165738 -17434045 + AT_rich Low_complexity Low_complexity 1 28 0 2 1669 597 308 63 99 chr3 142166182 142166485 -17433298 + B4A SINE B4 1 292 0 2 1669 486 33 0 0 chr3 142168793 142168853 -17430930 + (CA)n Simple_repeat Simple_repeat 1 60 0 2 1669 306 0 0 0 chr3 142169189 142169223 -17430560 + (CA)n Simple_repeat Simple_repeat 2 35 0 2 1669 205 387 38 0 chr3 142171165 142171271 -17428512 + MIR SINE MIR 15 124 -138 2 1669 1107 194 260 71 chr3 142171272 142171749 -17428034 + RMER2 LTR ERV1 1 567 0 2 1669 456 311 124 41 chr3 142172420 142172844 -17426939 + RLTR6-int LTR ERV1 1289 1688 -6090 2 1669 255 241 103 77 chr3 142173329 142173446 -17426337 + RLTR6-int LTR ERV1 3181 3300 -4301 2 1669 276 250 0 0 chr3 142173453 142173513 -17426270 + RLTR6-int LTR ERV1 3504 3563 -4038 2 1669 507 295 41 26 chr3 142173985 142174180 -17425603 + RLTR6-int LTR ERV1 4350 4547 -3231 2 1669 1182 313 49 26 chr3 142174450 142174996 -17424787 + MuRRS4-int LTR ERV1 3470 3963 -1100 2 1669 27 62 0 0 chr3 142175194 142175242 -17424541 + AT_rich Low_complexity Low_complexity 1 48 0 2 1669 36687 75 2 13 chr3 142175269 142181841 -17417942 - L1Md_F2 LINE L1 -12 6570 99 2 1669 865 273 118 106 chr3 142182293 142182842 -17416941 + RMER2 LTR ERV1 1 556 -11 2 1669 192 40 0 0 chr3 142183039 142183064 -17416719 + (TTG)n Simple_repeat Simple_repeat 1 25 0 2 1669 189 0 0 0 chr3 142184850 142184871 -17414912 + (CAAAAA)n Simple_repeat Simple_repeat 4 24 0 2 1669 978 53 0 0 chr3 142185103 142185236 -17414547 + (GGGAGA)n Simple_repeat Simple_repeat 1 133 0 2 1669 256 298 119 6 chr3 142185259 142185418 -17414365 + Arthur1 DNA Tip100 1025 1201 -2746 2 1669 225 0 0 0 chr3 142185473 142185498 -17414285 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 2 1669 933 18 0 0 chr3 142185681 142185792 -17413991 + (TCTA)n Simple_repeat Simple_repeat 3 113 0 2 1669 559 318 75 30 chr3 142186581 142186983 -17412800 + Lx9 LINE L1 7054 7473 -171 2 1669 243 0 0 0 chr3 142187667 142187694 -17412089 + (TC)n Simple_repeat Simple_repeat 2 28 0 2 1669 4800 121 29 68 chr3 142188014 142188955 -17410828 + RLTR13D6 LTR ERVK 1 864 -38 2 1669 563 131 20 0 chr3 142189257 142189356 -17410427 + GA-rich Low_complexity Low_complexity 3 103 0 2 1669 901 199 68 36 chr3 142189358 142189639 -17410144 - RMER17C LTR ERVK -13 397 108 2 1669 699 225 7 57 chr3 142189611 142189889 -17409894 - RMER17C LTR ERVK -519 439 16 2 1669 1179 195 30 9 chr3 142190641 142190874 -17408909 + Lx5 LINE L1 6745 6982 -68 2 1669 22 35 0 0 chr3 142190882 142190911 -17408872 + AT_rich Low_complexity Low_complexity 1 29 0 2 1669 2416 92 0 58 chr3 142191741 142192088 -17407695 - ORR1A2 LTR MaLR 0 327 1 2 1669 247 330 17 25 chr3 142192495 142192613 -17407170 - Tigger5 DNA MER2_type -1 2405 2289 2 1669 255 31 0 0 chr3 142192707 142192739 -17407044 + (A)n Simple_repeat Simple_repeat 1 32 0 2 1669 226 227 63 63 chr3 142192856 142192983 -17406800 + L1MA6 LINE L1 6155 6281 -19 2 1669 532 298 14 0 chr3 142194830 142194971 -17404812 + ID_B1 SINE B4 5 147 -77 2 1669 31 0 0 0 chr3 142194977 142195008 -17404775 + AT_rich Low_complexity Low_complexity 1 31 0 2 1669 7017 114 49 12 chr3 142195008 142196085 -17403698 - Lx4A LINE L1 0 7058 5942 3 1669 3075 118 54 2 chr3 142196085 142196567 -17403216 - L1_Mur2 LINE L1 -300 5577 5071 3 1669 213 39 0 0 chr3 142196683 142196709 -17403074 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 3 1669 290 298 80 8 chr3 142196753 142196878 -17402905 + B1_Mur1 SINE Alu 1 134 -15 3 1669 1000 221 65 190 chr3 142196878 142197135 -17402648 - RLTR30 LTR ERV1 0 379 175 3 1669 302 0 26 0 chr3 142197135 142197173 -17402610 + (CAA)n Simple_repeat Simple_repeat 2 40 0 3 1669 1000 221 65 190 chr3 142197173 142197346 -17402437 - RLTR30 LTR ERV1 -205 174 3 3 1669 524 151 0 72 chr3 142197932 142198125 -17401658 + GA-rich Low_complexity Low_complexity 2 180 0 3 1669 22 0 0 0 chr3 142198490 142198512 -17401271 + AT_rich Low_complexity Low_complexity 1 22 0 3 1669 21 0 0 0 chr3 142200493 142200514 -17399269 + AT_rich Low_complexity Low_complexity 1 21 0 3 1669 2729 86 10 2 chr3 142201189 142201585 -17398198 + MTB_Mm LTR MaLR 1 399 -8 3 1669 632 13 0 13 chr3 142202198 142202276 -17397507 + (TTTC)n Simple_repeat Simple_repeat 4 80 0 3 1669 644 36 0 12 chr3 142202285 142202369 -17397414 + (TCTCCC)n Simple_repeat Simple_repeat 3 85 0 3 1669 648 38 0 0 chr3 142202402 142202481 -17397302 + (TCTA)n Simple_repeat Simple_repeat 2 80 0 3 1669 21 0 0 0 chr3 142202751 142202772 -17397011 + AT_rich Low_complexity Low_complexity 1 21 0 3 1669 309 82 0 0 chr3 142203234 142203283 -17396500 + (TTTTG)n Simple_repeat Simple_repeat 2 50 0 3 1669 3457 90 4 5 chr3 142203477 142203982 -17395801 - RLTR1C LTR ERV1 0 507 1 3 1669 900 200 23 0 chr3 142203982 142204157 -17395626 - URR1B DNA MER1_type -45 180 2 3 1669 317 261 131 22 chr3 142204945 142205082 -17394701 + B4 SINE B4 2 153 -139 3 1669 619 246 17 113 chr3 142205169 142205407 -17394376 + Lx6 LINE L1 7219 7433 -27 3 1669 234 81 0 0 chr3 142205474 142205511 -17394272 + (CA)n Simple_repeat Simple_repeat 2 38 0 3 1669 1101 97 0 0 chr3 142207364 142207634 -17392149 + (CA)n Simple_repeat Simple_repeat 1 270 0 3 1669 252 0 0 0 chr3 142207942 142207970 -17391813 + (TAA)n Simple_repeat Simple_repeat 2 29 0 3 1669 271 345 17 34 chr3 142208015 142208132 -17391651 - PB1D10 SINE Alu 0 117 3 3 1669 3592 199 13 18 chr3 142209616 142210301 -17389482 + Lx6 LINE L1 6339 7020 -440 3 1669 733 177 0 0 chr3 142210315 142210445 -17389338 + B3 SINE B2 1 130 -86 3 1669 236 53 0 26 chr3 142210461 142210500 -17389283 + (CAAAAA)n Simple_repeat Simple_repeat 3 40 0 3 1669 189 0 0 0 chr3 142210515 142210536 -17389247 + (CAA)n Simple_repeat Simple_repeat 1 21 0 3 1669 204 97 0 0 chr3 142210539 142210570 -17389213 + (CAAG)n Simple_repeat Simple_repeat 1 31 0 3 1669 959 211 19 14 chr3 142210611 142210823 -17388960 + Lx7 LINE L1 7025 7237 -459 3 1669 22 0 0 0 chr3 142211162 142211184 -17388599 + AT_rich Low_complexity Low_complexity 1 22 0 3 1669 21 0 0 0 chr3 142212644 142212665 -17387118 + AT_rich Low_complexity Low_complexity 1 21 0 3 1670 447 371 24 42 chr3 142214418 142214584 -17385199 + RSINE1 SINE B4 3 165 0 3 1670 699 356 26 18 chr3 142214649 142214921 -17384862 - B4 SINE B4 -18 274 1 3 1670 694 149 0 15 chr3 142214923 142215059 -17384724 + CT-rich Low_complexity Low_complexity 3 136 0 3 1670 500 250 83 24 chr3 142215603 142215771 -17384012 - Lx4B LINE L1 0 7058 6881 3 1670 3422 77 34 6 chr3 142215794 142216267 -17383516 - Lx3_Mus LINE L1 -12 6997 6512 3 1670 4275 79 25 22 chr3 142216268 142216347 -17383436 + Lx3_Mus LINE L1 5845 5931 -1078 3 1670 324 0 0 0 chr3 142216347 142216383 -17383400 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 3 1670 4275 79 25 22 chr3 142216383 142216936 -17382847 + Lx3_Mus LINE L1 5932 6478 -531 3 1670 807 172 7 33 chr3 142217195 142217345 -17382438 - B1_Mus1 SINE Alu 0 148 3 3 1670 1652 137 27 82 chr3 142217752 142218219 -17381564 + RMER17C LTR ERVK 19 439 -519 3 1670 556 225 84 56 chr3 142218219 142218398 -17381385 + RMER17C-int LTR ERVK 1 184 -3054 3 1670 1153 196 184 85 chr3 142219469 142219903 -17379880 + RMER17C-int LTR ERVK 1514 1990 -1248 3 1670 987 154 24 0 chr3 142219917 142220086 -17379697 + RMER17C-int LTR ERVK 2170 2342 -896 3 1670 2187 114 220 16 chr3 142220084 142220656 -17379127 + RMER17C-int LTR ERVK 2533 3221 -17 3 1670 21 0 0 0 chr3 142220657 142220678 -17379105 + AT_rich Low_complexity Low_complexity 1 21 0 3 1670 7281 64 34 21 chr3 142220678 142221806 -17377977 - L1_Mus2 LINE L1 -1 6565 5424 3 1670 366 222 171 12 chr3 142222351 142222433 -17377350 - ID_B1 SINE B4 -8 216 122 3 1670 189 107 0 0 chr3 142223288 142223316 -17376467 + (T)n Simple_repeat Simple_repeat 1 28 0 3 1670 378 0 0 0 chr3 142224153 142224195 -17375588 + (TG)n Simple_repeat Simple_repeat 2 43 0 3 1670 1471 155 122 19 chr3 142224997 142225289 -17374494 - RMER17C LTR ERVK 0 410 85 3 1670 497 16 16 0 chr3 142225289 142225351 -17374432 + (GA)n Simple_repeat Simple_repeat 2 64 0 3 1670 1471 166 140 15 chr3 142225351 142225468 -17374315 - RMER17C LTR ERVK -326 84 13 3 1670 282 125 0 0 chr3 142227818 142227866 -17371917 + (TGAA)n Simple_repeat Simple_repeat 4 51 0 3 1670 195 42 0 0 chr3 142229282 142229306 -17370477 + (T)n Simple_repeat Simple_repeat 1 24 0 3 1670 293 118 20 0 chr3 142230343 142230394 -17369389 + (TTTTA)n Simple_repeat Simple_repeat 2 53 0 3 1670 488 125 0 36 chr3 142230395 142230478 -17369305 - B1_Mus2 SINE Alu 0 147 68 3 1670 323 307 62 67 chr3 142230963 142231141 -17368642 - MLT1E3 LTR MaLR -11 613 437 3 1670 288 0 0 0 chr3 142231529 142231561 -17368222 + (CA)n Simple_repeat Simple_repeat 2 33 0 3 1670 187 301 66 66 chr3 142231783 142231904 -17367879 - MIRm SINE MIR -116 160 40 3 1670 687 282 83 11 chr3 142232534 142233063 -17366720 - L1M3 LINE L1 -692 5599 5020 3 1670 614 318 39 101 chr3 142234410 142234629 -17365154 + B4A SINE B4 2 215 -77 3 1670 384 351 48 29 chr3 142234629 142234837 -17364946 + B3 SINE B2 1 212 -4 3 1670 614 318 39 101 chr3 142234837 142234925 -17364858 + B4A SINE B4 216 290 -2 3 1670 1011 280 94 10 chr3 142236285 142236668 -17363115 + MTE-int LTR MaLR 34 448 -1132 3 1670 3368 144 95 2 chr3 142236785 142237364 -17362419 + MERVL_2A-int LTR ERVL 4997 5629 -132 3 1670 334 121 14 43 chr3 142237364 142237433 -17362350 + MTE-int LTR MaLR 574 640 -1323 3 1670 273 79 0 0 chr3 142237433 142237471 -17362312 + MERVL-int LTR ERVL 5448 5485 0 3 1670 3355 114 2 6 chr3 142237476 142237971 -17361812 + MT2B LTR ERVL 7 489 -112 3 1670 3027 243 24 75 chr3 142238107 142239715 -17360068 - Lx5 LINE L1 -793 6257 4744 3 1670 435 267 83 69 chr3 142239715 142239932 -17359851 - RMER2 LTR ERV1 0 567 348 3 1670 357 380 44 22 chr3 142240096 142240411 -17359372 + Lx8 LINE L1 7150 7471 -2 3 1670 623 95 0 9 chr3 142240704 142240810 -17358973 + (GA)n Simple_repeat Simple_repeat 2 106 0 3 1670 467 193 23 0 chr3 142241049 142241137 -17358646 + MT2A LTR ERVL 338 427 -106 3 1670 1194 265 144 6 chr3 142242003 142242363 -17357420 - MTD LTR MaLR 0 419 10 3 1670 1203 131 16 16 chr3 142242424 142242456 -17357327 - B2_Mm2 SINE B2 -7 188 156 3 1670 261 0 0 0 chr3 142242456 142242485 -17357298 + (TA)n Simple_repeat Simple_repeat 2 30 0 3 1670 1203 131 16 16 chr3 142242485 142242638 -17357145 - B2_Mm2 SINE B2 -40 155 3 3 1670 291 28 0 0 chr3 142242681 142242717 -17357066 + (TC)n Simple_repeat Simple_repeat 2 37 0 3 1670 264 30 0 0 chr3 142242740 142242773 -17357010 + (TCTG)n Simple_repeat Simple_repeat 4 36 0 3 1670 15368 52 0 0 chr3 142242813 142244690 -17355093 + L1Md_F2 LINE L1 3710 5586 -297 3 1670 9018 31 0 1 chr3 142244690 142245687 -17354096 + L1Md_F2 LINE L1 5587 6582 0 3 1670 244 240 187 0 chr3 142245846 142245921 -17353862 - L1MA4A LINE L1 -367 5936 5848 3 1670 321 293 17 8 chr3 142245943 142246060 -17353723 - L1_Mur3 LINE L1 -131 5749 5632 3 1670 391 345 28 21 chr3 142247784 142247929 -17351854 + B3A SINE B2 48 193 -5 3 1670 285 262 107 72 chr3 142248120 142248576 -17351207 - L1MA4A LINE L1 -807 5490 4981 3 1670 360 0 0 0 chr3 142248655 142248695 -17351088 + (TG)n Simple_repeat Simple_repeat 1 40 0 3 1670 533 272 23 23 chr3 142248697 142248825 -17350958 - B3A SINE B2 -48 150 23 3 1670 226 235 20 0 chr3 142249135 142249186 -17350597 + CT-rich Low_complexity Low_complexity 3 54 0 3 1670 4795 103 10 10 chr3 142249191 142249868 -17349915 - L1_Mus4 LINE L1 -5 6631 5955 3 1670 3652 87 23 2 chr3 142249928 142250444 -17349339 - L1_Mus2 LINE L1 -204 6362 5830 3 1670 369 0 0 0 chr3 142251517 142251558 -17348225 + (TTA)n Simple_repeat Simple_repeat 1 41 0 3 1670 644 256 57 5 chr3 142251559 142251820 -17347963 - Lx4B LINE L1 0 7058 6694 3 1670 376 293 56 24 chr3 142251832 142251958 -17347825 + MLT1A0 LTR MaLR 1 130 -235 3 1670 264 30 0 0 chr3 142252116 142252149 -17347634 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 3 1670 492 266 143 7 chr3 142252530 142252670 -17347113 + RSINE1 SINE B4 7 165 0 3 1670 702 346 62 25 chr3 142253266 142253714 -17346069 + Lx8 LINE L1 7004 7468 -5 3 1670 522 0 0 0 chr3 142254047 142254105 -17345678 + (GA)n Simple_repeat Simple_repeat 1 58 0 3 1670 470 170 56 20 chr3 142254397 142254507 -17345276 + MT2A LTR ERVL 324 463 -121 3 1670 2561 53 3 53 chr3 142255212 142255551 -17344232 - RLTRETN_Mm LTR ERVK 0 322 1 3 1670 204 111 0 0 chr3 142255601 142255637 -17344146 + (T)n Simple_repeat Simple_repeat 1 36 0 3 1670 1328 254 143 0 chr3 142255750 142256100 -17343683 - MTD LTR MaLR 0 419 20 3 1670 237 43 64 0 chr3 142256104 142256151 -17343632 + (CAA)n Simple_repeat Simple_repeat 2 51 0 3 1670 362 273 50 68 chr3 142256543 142256704 -17343079 - L1_Rod LINE L1 -113 5767 5610 3 1670 424 343 7 15 chr3 142258393 142258529 -17341254 + B3A SINE B2 54 188 -10 3 1670 395 301 51 37 chr3 142258732 142258862 -17340921 - L1_Rod LINE L1 -655 5513 5324 3 1670 366 61 0 0 chr3 142258862 142258911 -17340872 + (TTA)n Simple_repeat Simple_repeat 1 49 0 3 1670 395 304 96 59 chr3 142258911 142259266 -17340517 - L1_Rod LINE L1 -533 5347 4982 3 1670 2633 252 25 64 chr3 142259425 142260160 -17339623 - Lx9 LINE L1 -11 7633 6925 3 1670 5035 108 1 28 chr3 142260160 142260865 -17338918 + L1_Mus2 LINE L1 5881 6566 0 3 1670 2633 252 25 64 chr3 142260865 142260971 -17338812 - Lx9 LINE L1 -720 6924 6825 3 1670 742 112 14 20 chr3 142261516 142261662 -17338121 + RMER17B LTR ERVK 317 461 -497 3 1670 872 204 56 29 chr3 142262451 142262664 -17337119 - ORR1C2 LTR MaLR -13 371 149 3 1670 372 244 0 0 chr3 142262664 142262791 -17336992 + GA-rich Low_complexity Low_complexity 2 128 0 3 1670 925 186 10 44 chr3 142262791 142262993 -17336790 - ORR1C2 LTR MaLR -200 184 1 3 1670 842 275 115 37 chr3 142265294 142265750 -17334033 - RLTR16 LTR ERVK -12 493 2 3 1670 215 313 59 25 chr3 142265990 142266108 -17333675 + L2a LINE L2 2974 3095 -331 4 1670 621 321 47 5 chr3 142268166 142268379 -17331404 + ID_B1 SINE B4 3 224 0 4 1670 3290 82 12 0 chr3 142268429 142268842 -17330941 - L1_Mus1 LINE L1 0 6567 6150 4 1670 252 77 0 0 chr3 142269176 142269215 -17330568 + (CAGA)n Simple_repeat Simple_repeat 2 40 0 4 1670 754 92 25 0 chr3 142269217 142269337 -17330446 + (GGAA)n Simple_repeat Simple_repeat 3 125 0 4 1670 1221 65 0 0 chr3 142270452 142270590 -17329193 + B1_Mm SINE Alu 1 138 -9 4 1670 216 0 0 0 chr3 142270590 142270614 -17329169 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 4 1670 230 56 0 27 chr3 142271591 142271628 -17328155 + (CAAAA)n Simple_repeat Simple_repeat 3 38 0 4 1670 369 335 45 6 chr3 142271737 142271891 -17327892 - MIR SINE MIR -66 196 36 4 1670 4903 137 29 50 chr3 142271891 142272714 -17327069 - RLTR13D1 LTR ERVK 0 806 1 4 1670 369 335 45 6 chr3 142272714 142272736 -17327047 - MIR SINE MIR -227 35 14 4 1670 1326 207 132 6 chr3 142272802 142273113 -17326670 - ORR1C2 LTR MaLR -34 350 1 4 1670 414 275 283 29 chr3 142273249 142273605 -17326178 + Lx7 LINE L1 7256 7689 -7 4 1670 200 59 29 0 chr3 142274223 142274257 -17325526 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 4 1670 4057 221 44 7 chr3 142274592 142275418 -17324365 - Lx5 LINE L1 0 7050 6195 4 1670 16672 156 44 20 chr3 142275435 142278311 -17321472 - L1_Mur2 LINE L1 -65 5812 2890 4 1670 410 0 0 20 chr3 142278311 142278362 -17321421 + (TTTC)n Simple_repeat Simple_repeat 1 50 0 4 1670 9012 152 42 29 chr3 142278362 142278613 -17321170 - L1_Mur2 LINE L1 -2988 2889 2612 4 1670 235 250 50 0 chr3 142278621 142278681 -17321102 - RLTR23 LTR ERV1 -19 411 349 4 1670 963 285 67 6 chr3 142278763 142279091 -17320692 + RLTR22_Mur LTR ERVK 415 762 -1086 4 1670 2119 141 16 2 chr3 142279390 142279801 -17319982 - L1_Mur2 LINE L1 -3268 2615 2197 4 1670 444 19 0 0 chr3 142280839 142280892 -17318891 + (TG)n Simple_repeat Simple_repeat 2 54 0 4 1670 231 173 0 0 chr3 142282884 142282936 -17316847 + A-rich Low_complexity Low_complexity 1 52 0 4 1670 249 332 6 22 chr3 142283139 142283248 -17316535 + CT-rich Low_complexity Low_complexity 1 107 0 4 1670 742 317 106 35 chr3 142284175 142284493 -17315290 - Lx8 LINE L1 -2 7471 7123 4 1670 793 166 20 27 chr3 142284493 142284642 -17315141 - B1_Mus1 SINE Alu 0 148 1 4 1670 742 317 106 35 chr3 142284642 142284728 -17315055 - Lx8 LINE L1 -351 7122 7038 4 1670 485 348 91 39 chr3 142284733 142285041 -17314742 + L1MC4a LINE L1 6717 7047 -835 4 1670 270 0 0 0 chr3 142285042 142285072 -17314711 + (TGAA)n Simple_repeat Simple_repeat 1 30 0 4 1670 384 171 0 0 chr3 142285272 142285354 -17314429 + (TA)n Simple_repeat Simple_repeat 2 83 0 4 1670 347 251 67 91 chr3 142285405 142285424 -17314359 - L1M2 LINE L1 -519 5652 5639 4 1670 321 26 0 0 chr3 142285424 142285462 -17314321 + (CA)n Simple_repeat Simple_repeat 2 39 0 4 1670 430 251 67 91 chr3 142285462 142285537 -17314246 - L1M2 LINE L1 -533 5638 5560 4 1670 294 29 0 0 chr3 142285537 142285572 -17314211 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 4 1670 1115 77 0 0 chr3 142285572 142285715 -17314068 - B1_Mus1 SINE Alu -3 145 3 4 1670 430 289 42 50 chr3 142285715 142285910 -17313873 - L1M2 LINE L1 -738 5559 5368 4 1670 339 324 53 44 chr3 142285946 142286288 -17313495 + L1MC4a LINE L1 7324 7668 -214 4 1670 504 0 0 0 chr3 142287099 142287155 -17312628 + (TTTTA)n Simple_repeat Simple_repeat 5 60 0 4 1670 923 128 15 0 chr3 142287155 142287288 -17312495 - B1_Mus1 SINE Alu -13 135 1 4 1670 2491 111 29 0 chr3 142290350 142290729 -17309054 + RLTR33 LTR ERVK 1 390 -288 4 1670 1548 247 115 71 chr3 142290741 142291667 -17308116 - RMER17B LTR ERVK -9 899 1 4 1670 1760 117 73 4 chr3 142291667 142291941 -17307842 + RLTR33 LTR ERVK 385 677 -1 4 1670 567 301 72 18 chr3 142291941 142292106 -17307677 - B3A SINE B2 -21 177 4 4 1670 277 304 110 12 chr3 142292266 142292429 -17307354 + L2a LINE L2 3248 3426 0 4 1670 831 261 152 29 chr3 142292449 142292824 -17306959 - MTC LTR MaLR 0 421 1 4 1670 886 129 18 12 chr3 142298500 142298665 -17301118 - L1_Mus3 LINE L1 0 6638 6473 4 1670 807 289 15 5 chr3 142299000 142299205 -17300578 + B3 SINE B2 2 208 -8 4 1670 289 235 2 16 chr3 142299258 142299330 -17300453 + PB1D10 SINE Alu 43 114 -33 4 1670 261 0 0 0 chr3 142299524 142299553 -17300230 + (TG)n Simple_repeat Simple_repeat 1 29 0 4 1670 543 307 74 13 chr3 142302487 142302718 -17297065 - MER89 LTR ERV1 -2 557 313 4 1670 342 0 0 0 chr3 142302719 142302757 -17297026 + (CA)n Simple_repeat Simple_repeat 2 39 0 4 1670 1357 260 30 0 chr3 142302852 142303217 -17296566 + MTEa LTR MaLR 1 376 -3 4 1670 296 217 0 0 chr3 142303220 142303280 -17296503 + MTEa-int LTR MaLR 1 60 -1520 4 1670 25 0 0 0 chr3 142303851 142303876 -17295907 + AT_rich Low_complexity Low_complexity 1 25 0 4 1670 511 148 0 0 chr3 142303876 142303957 -17295826 - RMER6D LTR ERVK -5 715 635 4 1670 314 211 0 0 chr3 142303954 142304011 -17295772 - RLTR30 LTR ERV1 -321 58 2 4 1670 645 302 107 19 chr3 142304023 142304530 -17295253 - L1MB7 LINE L1 -162 6022 5475 4 1670 467 75 0 24 chr3 142304531 142304613 -17295170 + (TTTTG)n Simple_repeat Simple_repeat 2 81 0 4 1670 590 250 22 0 chr3 142304750 142304886 -17294897 + RMER6B LTR ERVK 1 139 -322 4 1670 8435 129 42 49 chr3 142304887 142306550 -17293233 + MYSERV6-int LTR ERVK 3378 5028 -3931 4 1670 7812 150 52 68 chr3 142306614 142307928 -17291855 + MYSERV6-int LTR ERVK 5002 6348 -2611 4 1670 308 192 0 35 chr3 142307928 142308000 -17291783 + B1_Mus1 SINE Alu 8 71 -49 4 1670 7812 150 52 68 chr3 142308000 142308348 -17291435 + MYSERV6-int LTR ERVK 6349 6707 -2252 4 1670 3123 143 81 6 chr3 142308367 142308909 -17290874 + Lx2B LINE L1 6349 6931 -69 4 1670 251 171 0 79 chr3 142308911 142308987 -17290796 + A-rich Low_complexity Low_complexity 2 71 0 4 1670 559 172 50 0 chr3 142309028 142309127 -17290656 + MYSERV6-int LTR ERVK 6741 6844 -2115 4 1670 753 218 0 0 chr3 142309181 142309351 -17290432 + A-rich Low_complexity Low_complexity 1 170 0 4 1670 2286 207 45 62 chr3 142309355 142309932 -17289851 - RLTR31A_Mm LTR ERVK -17 567 1 4 1670 4147 138 60 13 chr3 142309932 142310719 -17289064 + MYSERV6-int LTR ERVK 6939 7762 -1197 4 1670 1000 139 76 0 chr3 142310724 142310896 -17288887 + RMER6B LTR ERVK 1 185 -276 4 1670 1903 116 6 67 chr3 142310920 142311263 -17288520 + RLTRETN_Mm LTR ERVK 1 322 0 4 1670 309 95 31 16 chr3 142311288 142311352 -17288431 + (CATATA)n Simple_repeat Simple_repeat 2 66 0 4 1670 1092 76 21 0 chr3 142311394 142311538 -17288245 + B1_Mm SINE Alu 1 147 0 4 1670 213 65 0 0 chr3 142311541 142311572 -17288211 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 4 1670 215 231 0 0 chr3 142311576 142311615 -17288168 + B4A SINE B4 34 72 -220 4 1670 395 291 140 57 chr3 142311637 142311995 -17287788 - MLT1D LTR MaLR -32 473 49 4 1670 180 97 0 0 chr3 142312243 142312274 -17287509 + (TG)n Simple_repeat Simple_repeat 1 31 0 4 1670 239 253 129 6 chr3 142312410 142312581 -17287202 - L1M4b LINE L1 -4199 3135 2944 4 1670 336 153 111 10 chr3 142312636 142312735 -17287048 + Lx9 LINE L1 7431 7539 -105 4 1670 530 98 12 0 chr3 142312751 142312833 -17286950 + (TC)n Simple_repeat Simple_repeat 2 84 0 4 1670 474 263 80 0 chr3 142312835 142312972 -17286811 - B1_Mur4 SINE Alu -1 149 2 4 1670 2352 199 47 103 chr3 142313198 142313905 -17285878 - ETnERV2-int LTR ERVK -981 6425 5759 4 1670 30292 85 9 15 chr3 142313913 142319279 -17280504 + L1Md_F2 LINE L1 258 5585 -298 4 1670 7088 98 8 1 chr3 142319280 142320269 -17279514 + L1Md_F2 LINE L1 5587 6582 0 4 1670 1157 296 127 54 chr3 142320681 142321556 -17278227 - ORR1E-int LTR MaLR -97 1483 1 4 1670 532 311 93 11 chr3 142321645 142321827 -17277956 - B3 SINE B2 0 216 20 4 1670 226 323 0 0 chr3 142322129 142322194 -17277589 + (TG)n Simple_repeat Simple_repeat 2 66 0 4 1670 466 279 19 0 chr3 142322217 142322321 -17277462 - RSINE1 SINE B4 -17 148 43 4 1670 1356 46 0 0 chr3 142322472 142322800 -17276983 + (CA)n Simple_repeat Simple_repeat 1 328 0 4 1670 335 23 23 0 chr3 142323644 142323688 -17276095 + (CAAAA)n Simple_repeat Simple_repeat 2 46 0 4 1670 310 320 129 10 chr3 142324194 142324295 -17275488 - PB1D10 SINE Alu 0 127 15 4 1670 276 368 12 43 chr3 142325144 142325306 -17274477 - MER5A1 DNA MER1_type -6 160 4 4 1670 252 261 93 36 chr3 142325851 142325990 -17273793 - Charlie19a DNA Charlie -121 265 119 4 1670 216 113 54 54 chr3 142326122 142326178 -17273605 + T-rich Low_complexity Low_complexity 2 57 0 4 1670 23 0 0 0 chr3 142326240 142326263 -17273520 + AT_rich Low_complexity Low_complexity 1 23 0 4 1670 303 93 0 0 chr3 142326813 142326856 -17272927 + (TTCA)n Simple_repeat Simple_repeat 3 45 0 4 1670 1490 189 64 29 chr3 142328481 142328881 -17270902 - RLTR1 LTR ERV1 0 624 135 4 1670 9812 134 96 95 chr3 142328973 142331320 -17268463 - RLTR1B-int LTR ERV1 0 3299 949 4 1670 212 170 0 19 chr3 142331320 142331374 -17268409 + CT-rich Low_complexity Low_complexity 2 54 0 4 1670 1039 117 0 11 chr3 142331375 142331557 -17268226 + (TTC)n Simple_repeat Simple_repeat 1 180 0 4 1670 1677 126 0 12 chr3 142331601 142331859 -17267924 - MMVL30-int LTR ERV1 -2245 1453 1199 4 1670 1368 79 11 5 chr3 142332452 142332642 -17267141 + B2_Mm1t SINE B2 1 191 -2 4 1670 360 0 0 0 chr3 142332668 142332708 -17267075 + (GA)n Simple_repeat Simple_repeat 1 40 0 4 1670 341 358 18 0 chr3 142332711 142332820 -17266963 - B3A SINE B2 -30 168 58 4 1670 22 0 0 0 chr3 142332906 142332928 -17266855 + AT_rich Low_complexity Low_complexity 1 22 0 4 1670 697 257 56 39 chr3 142334035 142334266 -17265517 + B4A SINE B4 9 243 -49 4 1670 900 276 116 21 chr3 142334724 142335053 -17264730 - MTE2b LTR MaLR -9 370 11 4 1670 789 41 0 0 chr3 142335128 142335225 -17264558 + (GAAA)n Simple_repeat Simple_repeat 3 99 0 4 1670 386 312 0 27 chr3 142335282 142335430 -17264353 + L1MC LINE L1 3608 3751 -2395 4 1670 6461 66 2 1 chr3 142335436 142336638 -17263145 + L1_Mus1 LINE L1 5146 6347 -220 4 1670 465 209 0 35 chr3 142336675 142336789 -17262994 + RLTR28 LTR ERVL 389 498 -26 4 1670 927 249 5 5 chr3 142337227 142337437 -17262346 + B3 SINE B2 7 216 0 4 1670 687 116 2 5 chr3 142338387 142338501 -17261282 + B1_Mus1 SINE Alu 2 112 -37 4 1670 1454 212 5 73 chr3 142338715 142338877 -17260906 + L1_Mur2 LINE L1 1893 2049 -3828 4 1670 369 86 0 0 chr3 142338877 142338935 -17260848 + (CA)n Simple_repeat Simple_repeat 2 59 0 5 1670 1454 212 5 73 chr3 142338935 142339195 -17260588 + L1_Mur2 LINE L1 2050 2286 -3591 4 1670 4351 127 31 12 chr3 142339183 142339903 -17259880 + L1VL4 LINE L1 586 1326 -2233 5 1670 1567 43 5 0 chr3 142339903 142340089 -17259694 + B2_Mm1t SINE B2 1 187 -6 5 1670 4351 111 10 11 chr3 142340089 142340315 -17259468 + L1VL4 LINE L1 1327 1553 -2006 5 1670 7457 132 55 31 chr3 142340319 142341635 -17258148 - MMETn-int LTR ERVK 0 4844 3498 5 1670 5831 143 28 12 chr3 142341655 142343044 -17256739 - MMETn-int LTR ERVK -3321 4085 2359 5 208 15073 92 5 44 chr3 142343280 142345248 -17254535 - MMETn-int LTR ERVK -2657 2187 271 5 1671 306 0 0 0 chr3 142345248 142345282 -17254501 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 5 1671 15073 92 5 44 chr3 142345282 142345586 -17254197 - MMETn-int LTR ERVK -4574 270 2 5 1671 1759 130 18 68 chr3 142345587 142345926 -17253857 - RLTRETN_Mm LTR ERVK 0 322 1 5 1671 18747 162 15 59 chr3 142345926 142346437 -17253346 + Lx2A LINE L1 2126 2470 -3416 5 1671 195 42 0 0 chr3 142346437 142346461 -17253322 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 5 1671 18747 162 15 59 chr3 142346461 142349722 -17250061 + Lx2A LINE L1 2471 5731 -155 5 1671 1745 122 23 37 chr3 142349837 142350291 -17249492 + RLTR1B LTR ERV1 135 624 0 5 1671 1252 154 115 128 chr3 142350291 142351067 -17248716 + RLTR1B-int LTR ERV1 1 623 -6933 5 1671 1269 198 26 26 chr3 142351218 142351483 -17248300 + RLTR1B-int LTR ERV1 514 778 -2521 5 1671 11532 83 43 24 chr3 142351634 142353542 -17246241 + RLTR1B-int LTR ERV1 783 3425 -1638 5 1671 4062 55 15 44 chr3 142353540 142354087 -17245696 + RLTR1B-int LTR ERV1 2692 3222 -77 5 1671 688 114 6 57 chr3 142354091 142354240 -17245543 + RLTR1B-int LTR ERV1 3221 3299 0 5 1671 310 149 0 0 chr3 142354304 142354351 -17245432 + RLTR1B LTR ERV1 466 512 0 5 1671 2703 118 8 0 chr3 142354351 142354749 -17245034 + Lx2A LINE L1 5718 6118 -890 5 1671 2140 116 3 14 chr3 142354753 142355103 -17244680 - RLTR9E LTR ERVK -50 359 14 5 1671 5483 106 78 8 chr3 142355103 142355950 -17243833 + Lx2A LINE L1 6103 7008 0 5 1671 236 275 14 14 chr3 142355979 142356049 -17243734 + MTEb LTR MaLR 124 193 -186 5 1671 382 241 55 9 chr3 142356049 142356158 -17243625 + L1M4 LINE L1 4014 4127 -2019 5 1671 883 311 153 48 chr3 142356180 142356873 -17242910 - RMER1C Other Other -27 1315 544 5 1671 3748 114 24 5 chr3 142356873 142357427 -17242356 - LTRIS2 LTR ERV1 0 564 1 5 1671 883 311 153 48 chr3 142357427 142357446 -17242337 - RMER1C Other Other -799 543 528 5 1671 1977 162 18 72 chr3 142357736 142358123 -17241660 + ORR1B2 LTR MaLR 1 366 -1 5 1671 345 316 31 0 chr3 142358133 142358290 -17241493 + L1MD LINE L1 4149 4310 -1836 5 1671 312 247 11 23 chr3 142358290 142358377 -17241406 - MTE2a LTR MaLR 0 379 294 5 1671 4381 115 84 59 chr3 142358385 142359168 -17240615 + Lx4A LINE L1 6255 7057 -1 5 1671 1904 157 69 8 chr3 142359168 142359528 -17240255 - ORR1B1 LTR MaLR -10 384 3 5 1671 694 172 30 7 chr3 142359533 142359668 -17240115 + B1_Mur1 SINE Alu 5 142 -7 5 1671 212 171 24 0 chr3 142359759 142359800 -17239983 + GA-rich Low_complexity Low_complexity 1 42 0 5 1671 490 272 40 56 chr3 142359800 142360043 -17239740 - MTE2a LTR MaLR -57 322 83 5 1671 1005 213 15 5 chr3 142360273 142360476 -17239307 + B3 SINE B2 6 210 -6 5 1671 1978 137 41 0 chr3 142360747 142361061 -17238722 + ORR1A2 LTR MaLR 1 327 0 5 1671 259 344 0 0 chr3 142362218 142362308 -17237475 - Charlie19a DNA Charlie -252 134 45 5 1671 338 275 98 16 chr3 142362354 142362476 -17237307 + B1F1 SINE Alu 18 149 0 5 1671 417 20 0 0 chr3 142363132 142363182 -17236601 + (CA)n Simple_repeat Simple_repeat 2 51 0 5 1671 476 224 188 94 chr3 142364419 142364621 -17235162 - ID_B1 SINE B4 -2 222 2 5 1671 452 187 149 0 chr3 142365778 142365885 -17233898 + ID_B1 SINE B4 102 224 0 5 1671 321 214 9 109 chr3 142365877 142365987 -17233796 + MT2B LTR ERVL 152 250 -351 5 1671 597 175 19 6 chr3 142365899 142366007 -17233776 + PB1D9 SINE Alu 10 115 -5 5 1671 1486 78 16 0 chr3 142366007 142366198 -17233585 + B2_Mm2 SINE B2 2 195 0 5 1671 442 225 12 148 chr3 142366198 142366251 -17233532 + B1_Mur1 SINE Alu 108 149 0 5 1671 224 258 0 46 chr3 142366558 142366623 -17233160 + ID4 SINE ID 2 63 -20 5 1671 574 257 0 7 chr3 142367083 142367220 -17232563 + ID_B1 SINE B4 81 216 -8 5 1671 255 61 0 0 chr3 142367463 142367496 -17232287 + (TTA)n Simple_repeat Simple_repeat 1 33 0 5 1671 411 185 98 0 chr3 142367498 142367590 -17232193 - B1_Mur3 SINE Alu -47 102 2 5 1671 29 0 0 0 chr3 142367591 142367620 -17232163 + AT_rich Low_complexity Low_complexity 1 29 0 5 1671 257 247 64 64 chr3 142367796 142367874 -17231909 - ID4_ SINE ID 0 83 6 5 1671 273 240 107 0 chr3 142367881 142367956 -17231827 - PB1D10 SINE Alu -8 109 27 5 1671 437 220 16 63 chr3 142367992 142368118 -17231665 - Lx6 LINE L1 -403 7057 6938 5 1671 4876 179 43 19 chr3 142368122 142369126 -17230657 + RLTR25B LTR ERVK 1 1028 0 5 1671 273 149 328 0 chr3 142370222 142370289 -17229494 + URR1A DNA MER1_type 1 89 -137 5 1671 22 0 0 0 chr3 142370353 142370375 -17229408 + AT_rich Low_complexity Low_complexity 1 22 0 5 1671 2834 75 62 124 chr3 142370891 142371405 -17228378 - RLTR45 LTR ERVK 0 482 1 5 1671 383 261 104 0 chr3 142371495 142371610 -17228173 - ID_B1 SINE B4 -7 217 91 5 1671 279 0 0 0 chr3 142371610 142371641 -17228142 + (CCTG)n Simple_repeat Simple_repeat 4 34 0 5 1671 284 248 94 47 chr3 142371651 142371757 -17228026 - PB1D7 SINE Alu -9 111 1 5 1671 300 240 27 0 chr3 142372261 142372336 -17227447 - ID4_ SINE ID -5 78 2 5 1671 237 298 111 49 chr3 142372393 142372834 -17226949 - L1M5 LINE L1 -580 5864 5412 5 1671 345 24 0 0 chr3 142373390 142373432 -17226351 + (TG)n Simple_repeat Simple_repeat 2 43 0 5 1671 927 255 112 63 chr3 142374059 142374469 -17225314 - RMER5 LTR ERV1 -28 506 77 5 1671 471 272 138 114 chr3 142374609 142374895 -17224888 - MLT1C LTR MaLR -80 387 82 5 1671 803 221 85 20 chr3 142374895 142375094 -17224689 - B3 SINE B2 -4 212 1 5 1671 471 272 138 114 chr3 142375094 142375185 -17224598 - MLT1C LTR MaLR -386 81 1 5 1671 2028 153 68 89 chr3 142375513 142375972 -17223811 + RLTR44B LTR ERVK 1 449 0 5 1671 314 196 0 0 chr3 142375972 142376028 -17223755 + RLTR44-int LTR ERVK 1 56 -2756 5 1671 5445 63 1 6 chr3 142376041 142376714 -17223069 + RLTR44-int LTR ERVK 819 1488 -1324 5 1671 4849 56 17 2 chr3 142376985 142377575 -17222208 + RLTR44-int LTR ERVK 2214 2812 0 5 1671 1697 164 72 80 chr3 142377575 142378111 -17221672 + RLTR44B LTR ERVK 1 469 -17 5 1671 229 218 164 114 chr3 142378164 142378304 -17221479 + B1F SINE Alu 1 147 -2 5 1671 513 0 0 0 chr3 142378364 142378421 -17221362 + (TAGA)n Simple_repeat Simple_repeat 2 58 0 5 1671 472 326 130 8 chr3 142378586 142378944 -17220839 + MLT2D LTR ERVL 19 413 -1 5 1671 277 359 30 15 chr3 142379177 142379310 -17220473 + MER106B DNA MER1_type 1 135 -924 5 1671 180 111 0 0 chr3 142379615 142379642 -17220141 + (TTTTC)n Simple_repeat Simple_repeat 2 28 0 5 1671 553 250 98 75 chr3 142379685 142379940 -17219843 - B4A SINE B4 -20 272 12 5 1671 267 31 0 0 chr3 142380433 142380465 -17219318 + (GA)n Simple_repeat Simple_repeat 2 33 0 5 1671 295 289 21 0 chr3 142380796 142380893 -17218890 + MIR SINE MIR 164 262 0 5 1671 442 188 0 50 chr3 142381658 142381759 -17218024 - PB1D10 SINE Alu 0 117 22 5 1671 828 146 0 40 chr3 142381824 142381974 -17217809 + B1_Mur3 SINE Alu 6 149 0 5 1671 374 234 0 9 chr3 142382002 142382110 -17217673 + (TA)n Simple_repeat Simple_repeat 1 107 0 5 1671 340 237 89 77 chr3 142382134 142382303 -17217480 - RLTR13D3 LTR ERVK 0 1114 944 5 1671 256 143 0 0 chr3 142382541 142382583 -17217200 - B2_Mm2 SINE B2 -153 42 1 5 1671 1540 217 79 44 chr3 142384015 142384420 -17215363 - MTD LTR MaLR 0 419 1 5 1671 469 262 14 7 chr3 142384448 142384594 -17215189 + L1MA5 LINE L1 5009 5155 -988 5 1671 369 221 38 19 chr3 142384572 142384678 -17215105 + L1MA5 LINE L1 5387 5494 -806 5 1671 401 290 48 0 chr3 142384758 142384882 -17214901 + RSINE1 SINE B4 7 136 -29 5 1671 864 302 76 61 chr3 142384959 142385600 -17214183 + L1MA5 LINE L1 5638 6288 -12 5 1671 471 254 183 0 chr3 142385789 142385958 -17213825 + B3 SINE B2 1 200 -16 5 1671 484 303 13 25 chr3 142387012 142387171 -17212612 + RSINE1 SINE B4 3 159 -6 5 1671 250 239 18 27 chr3 142387208 142387281 -17212502 + B1F2 SINE Alu 1 75 -73 5 1671 1607 180 52 25 chr3 142387298 142387662 -17212121 - ORR1D1 LTR MaLR 0 374 1 5 1671 180 152 0 0 chr3 142388039 142388072 -17211711 + A-rich Low_complexity Low_complexity 1 33 0 5 1671 375 41 0 0 chr3 142388747 142388796 -17210987 + (TG)n Simple_repeat Simple_repeat 2 50 0 5 1671 531 0 0 0 chr3 142390071 142390130 -17209653 + (TAGA)n Simple_repeat Simple_repeat 2 60 0 5 1671 189 74 0 0 chr3 142390130 142390156 -17209627 + (CAGT)n Simple_repeat Simple_repeat 2 28 0 5 1671 292 281 0 12 chr3 142390234 142390317 -17209466 + PB1D10 SINE Alu 1 82 -35 5 1671 301 337 10 0 chr3 142390820 142390921 -17208862 + RSINE1 SINE B4 3 104 -61 5 1671 283 302 23 31 chr3 142391018 142391148 -17208635 - RSINE1 SINE B4 -35 130 2 5 1671 808 226 0 0 chr3 142391354 142391500 -17208283 + B1_Mur1 SINE Alu 1 146 -3 5 1671 326 206 0 29 chr3 142392112 142392182 -17207601 + ID4 SINE ID 16 83 0 5 1671 340 202 11 63 chr3 142392277 142392372 -17207411 + RSINE1 SINE B4 41 130 -35 5 1671 228 214 0 0 chr3 142392397 142392453 -17207330 + (TAGA)n Simple_repeat Simple_repeat 1 56 0 5 1671 261 273 15 0 chr3 142392819 142392885 -17206898 + tRNA-Ala-GCA tRNA tRNA 2 68 -7 5 1671 248 293 13 26 chr3 142392885 142392896 -17206887 + ID4_ SINE ID 8 83 0 5 1671 391 297 43 14 chr3 142393059 142393199 -17206584 - RSINE1 SINE B4 -19 146 3 5 1671 331 296 93 51 chr3 142393359 142393573 -17206210 - MIRb SINE MIR -30 238 16 5 1671 546 266 14 7 chr3 142393585 142393725 -17206058 + ID_B1 SINE B4 84 224 0 5 1671 306 0 0 0 chr3 142394458 142394492 -17205291 + (T)n Simple_repeat Simple_repeat 1 34 0 5 1671 363 260 29 18 chr3 142394526 142394657 -17205126 + PB1D10 SINE Alu 3 134 -15 5 1671 549 191 221 28 chr3 142396444 142396589 -17203194 + B2_Mm2 SINE B2 5 177 -18 5 1671 349 282 43 58 chr3 142396609 142396748 -17203035 - MLT1A0 LTR MaLR -59 306 170 5 1671 519 60 0 0 chr3 142398123 142398190 -17201593 + (GGAAA)n Simple_repeat Simple_repeat 3 69 0 5 1671 381 239 33 133 chr3 142398340 142398490 -17201293 - RSINE1 SINE B4 -28 137 3 5 1671 29 47 0 0 chr3 142399194 142399237 -17200546 + AT_rich Low_complexity Low_complexity 1 43 0 5 1671 1433 84 16 0 chr3 142399874 142400064 -17199719 + B2_Mm2 SINE B2 3 195 0 5 1671 229 102 281 78 chr3 142400507 142400571 -17199212 + B3A SINE B2 1 77 -121 5 1671 437 143 26 0 chr3 142400925 142401002 -17198781 - B1_Mur1 SINE Alu -4 145 67 5 1671 270 225 24 59 chr3 142400927 142401012 -17198771 - ID_B1 SINE B4 -6 218 137 5 1671 1207 36 0 0 chr3 142401400 142401539 -17198244 + B1_Mus2 SINE Alu 1 139 -8 6 1671 180 0 0 0 chr3 142401539 142401559 -17198224 + (CAA)n Simple_repeat Simple_repeat 2 21 0 6 1671 489 156 11 22 chr3 142401641 142401733 -17198050 - PB1D7 SINE Alu -1 119 29 6 1671 541 282 93 30 chr3 142401835 142402105 -17197678 + B4A SINE B4 2 288 -4 6 1671 375 213 45 0 chr3 142402798 142402899 -17196884 + B1_Mus2 SINE Alu 1 145 -2 6 1671 252 116 0 0 chr3 142403392 142403435 -17196348 + B3 SINE B2 1 43 -173 6 1671 245 254 140 27 chr3 142404110 142404260 -17195523 + B4 SINE B4 2 168 -124 6 1671 696 194 82 0 chr3 142404409 142404543 -17195240 + B1_Mur4 SINE Alu 1 145 -5 6 1671 328 265 62 145 chr3 142404566 142404870 -17194913 - L1MC4 LINE L1 -135 7907 7629 6 1671 231 205 109 98 chr3 142404914 142404931 -17194852 + MT2B LTR ERVL 156 247 -353 6 1671 279 176 257 0 chr3 142404931 142405005 -17194778 + PB1D9 SINE Alu 2 94 -26 6 1671 533 299 97 105 chr3 142405278 142405550 -17194233 - L1MC4 LINE L1 -986 7056 6787 6 1671 663 220 101 35 chr3 142405550 142405748 -17194035 - B3 SINE B2 -4 212 2 6 1671 533 299 97 105 chr3 142405748 142405856 -17193927 - L1MC4 LINE L1 -1256 6786 6679 6 1671 854 282 80 25 chr3 142405865 142406192 -17193591 - MER2 DNA MER2_type 0 345 1 6 1671 235 244 98 22 chr3 142406241 142406333 -17193450 - L1MC4 LINE L1 -1473 6569 6471 6 1671 396 0 0 0 chr3 142406366 142406410 -17193373 + (TC)n Simple_repeat Simple_repeat 1 44 0 6 1671 427 268 94 120 chr3 142406621 142406812 -17192971 - B3A SINE B2 -8 187 2 6 1671 414 202 119 0 chr3 142407369 142407478 -17192305 + ID_B1 SINE B4 102 223 -1 6 1671 213 213 21 0 chr3 142407915 142407962 -17191821 + C-rich Low_complexity Low_complexity 5 52 0 6 1671 2581 113 77 8 chr3 142409494 142409885 -17189898 + MTC LTR MaLR 1 418 -3 6 1671 1299 81 52 0 chr3 142409885 142410057 -17189726 + B2_Mm2 SINE B2 1 181 -14 6 1671 1156 72 12 6 chr3 142410057 142410225 -17189558 + (GAAA)n Simple_repeat Simple_repeat 4 172 0 6 1671 749 228 18 6 chr3 142410640 142410808 -17188975 + ORR1B1 LTR MaLR 1 170 -224 6 1671 315 0 0 0 chr3 142410819 142410854 -17188929 + (CA)n Simple_repeat Simple_repeat 1 35 0 6 1671 654 274 9 8 chr3 142411031 142411218 -17188565 - MT2A LTR ERVL -71 462 228 6 1671 396 298 66 0 chr3 142412216 142412367 -17187416 + B3A SINE B2 1 161 -37 6 1671 198 71 0 0 chr3 142412780 142412808 -17186975 + (CAAT)n Simple_repeat Simple_repeat 2 29 0 6 1671 252 188 0 123 chr3 142413376 142413449 -17186334 + MT2B LTR ERVL 178 241 -360 6 1671 526 162 0 29 chr3 142413384 142413486 -17186297 + PB1D9 SINE Alu 22 120 0 6 1671 351 113 0 0 chr3 142413496 142413549 -17186234 + (TGG)n Simple_repeat Simple_repeat 1 53 0 6 1671 245 297 51 51 chr3 142413577 142413694 -17186089 + PB1D10 SINE Alu 1 117 0 6 1671 1163 23 0 0 chr3 142413753 142413885 -17185898 + B1_Mus2 SINE Alu 5 136 -11 6 1671 240 59 0 0 chr3 142413885 142413919 -17185864 + (G)n Simple_repeat Simple_repeat 1 34 0 6 1671 653 228 61 52 chr3 142413959 142414172 -17185611 + B3A SINE B2 2 216 0 6 1671 180 0 0 0 chr3 142414175 142414195 -17185588 + (T)n Simple_repeat Simple_repeat 1 20 0 6 1671 253 324 79 51 chr3 142414578 142414793 -17184990 - L2a LINE L2 -1 3425 3205 6 1671 7881 58 15 4 chr3 142416127 142417478 -17182305 - L1Md_F2 LINE L1 0 6582 5212 6 1671 649 289 23 60 chr3 142417847 142418149 -17181634 - B4A SINE B4 0 292 2 6 1671 583 207 121 44 chr3 142418842 142418883 -17180900 + B3A SINE B2 3 37 -161 6 1671 3184 95 27 35 chr3 142418883 142419362 -17180421 + MT2C_Mm LTR ERVL 1 475 0 6 1671 583 207 121 44 chr3 142419362 142419502 -17180281 + B3A SINE B2 38 198 0 6 1671 215 313 0 0 chr3 142419552 142419619 -17180164 + B4A SINE B4 82 148 -144 6 1671 276 219 52 20 chr3 142419564 142419673 -17180110 + B1F2 SINE Alu 9 118 -2 6 1671 748 134 104 0 chr3 142419920 142420054 -17179729 + B1_Mur2 SINE Alu 2 149 0 6 1671 318 26 0 0 chr3 142420337 142420376 -17179407 + (TG)n Simple_repeat Simple_repeat 2 40 0 6 1671 2716 146 34 113 chr3 142421160 142421875 -17177908 + RMER6A LTR ERVK 57 756 0 6 1671 469 313 89 11 chr3 142421933 142422158 -17177625 + MIR SINE MIR 24 267 -1 6 1671 597 250 21 7 chr3 142422548 142422693 -17177090 + B1F SINE Alu 1 147 -2 6 1671 1336 111 0 5 chr3 142422697 142422888 -17176895 + B2_Mm2 SINE B2 1 190 -5 6 1671 678 213 28 0 chr3 142422903 142423044 -17176739 + B1_Mur2 SINE Alu 5 149 0 6 1671 676 160 130 0 chr3 142423243 142423374 -17176409 + B1_Mus1 SINE Alu 1 148 0 6 1671 1641 21 11 0 chr3 142423774 142423961 -17175822 - B2_Mm1a SINE B2 -4 189 1 6 1671 351 0 0 0 chr3 142424204 142424243 -17175540 + (TC)n Simple_repeat Simple_repeat 1 39 0 6 1671 530 285 0 20 chr3 142424255 142424402 -17175381 + B1_Mur2 SINE Alu 1 144 -5 6 1671 222 191 0 0 chr3 142424402 142424449 -17175334 + GA-rich Low_complexity Low_complexity 1 47 0 6 1671 310 244 67 133 chr3 142424458 142424789 -17174994 - Lx7 LINE L1 -142 7554 7246 6 1671 25 0 0 0 chr3 142424795 142424820 -17174963 + AT_rich Low_complexity Low_complexity 1 25 0 6 1671 690 232 87 10 chr3 142425878 142426074 -17173709 - ID_B1 SINE B4 -13 211 1 6 1671 730 178 47 0 chr3 142426133 142426262 -17173521 + B1_Mus1 SINE Alu 1 135 -13 6 1671 245 51 26 0 chr3 142426263 142426302 -17173481 + (CAAA)n Simple_repeat Simple_repeat 1 40 0 6 1671 2436 216 19 67 chr3 142426321 142426962 -17172821 - RMER19C LTR ERVK -1 610 1 6 1671 342 282 19 0 chr3 142427131 142427234 -17172549 - PB1D10 SINE Alu -11 106 2 6 1671 195 69 0 0 chr3 142427852 142427881 -17171902 + (TCTG)n Simple_repeat Simple_repeat 2 30 0 6 1671 435 181 85 9 chr3 142427900 142428006 -17171777 - B1_Mur2 SINE Alu -35 114 1 6 1671 250 257 28 65 chr3 142427909 142428017 -17171766 - MT2B LTR ERVL -343 258 155 6 1671 436 194 361 0 chr3 142429881 142430025 -17169758 + B3 SINE B2 2 197 -19 6 1671 325 243 29 0 chr3 142430114 142430184 -17169599 - ID4_ SINE ID -11 72 1 6 1671 378 0 0 0 chr3 142430283 142430325 -17169458 + (TCCA)n Simple_repeat Simple_repeat 3 44 0 6 1671 218 278 0 0 chr3 142430760 142430814 -17168969 + B3A SINE B2 4 57 -141 6 1671 247 271 129 26 chr3 142430959 142431114 -17168669 - Kanga2_a DNA Tc2 -391 497 327 6 1671 474 269 8 8 chr3 142431265 142431385 -17168398 + B1F1 SINE Alu 1 120 -29 6 1671 212 171 0 0 chr3 142432867 142432908 -17166875 + A-rich Low_complexity Low_complexity 1 41 0 6 1671 242 274 96 0 chr3 142432914 142432987 -17166796 - RSINE1 SINE B4 -83 82 3 6 1671 666 302 83 19 chr3 142432995 142433517 -17166266 - L1_Rod LINE L1 -698 5599 4987 6 1671 647 233 88 11 chr3 142433555 142433734 -17166049 - B3 SINE B2 -5 190 1 6 1671 422 238 30 0 chr3 142433738 142433839 -17165944 - L1_Rod LINE L1 -1121 5022 4919 6 1671 225 247 104 0 chr3 142433879 142433956 -17165827 - PB1 SINE Alu -30 97 13 6 1671 282 29 0 0 chr3 142434041 142434076 -17165707 + (TCTG)n Simple_repeat Simple_repeat 1 35 0 6 1671 1455 85 5 5 chr3 142434903 142435093 -17164690 + B2_Mm2 SINE B2 1 190 -5 6 1671 4789 110 55 10 chr3 142435207 142435933 -17163850 - Lx2 LINE L1 -120 6877 6119 6 1671 783 76 19 0 chr3 142435935 142436040 -17163743 - U6 snRNA snRNA 0 107 1 6 1671 466 245 81 56 chr3 142436302 142436462 -17163321 - B4A SINE B4 0 292 129 6 1671 255 314 130 41 chr3 142436530 142436676 -17163107 - B4A SINE B4 -128 164 6 6 1671 216 225 202 0 chr3 142436659 142436748 -17163035 - PB1D10 SINE Alu -9 108 2 6 1671 1347 104 0 20 chr3 142437937 142438133 -17161650 - B2_Mm2 SINE B2 0 195 4 6 1671 357 237 111 30 chr3 142438734 142438869 -17160914 + B1F SINE Alu 3 148 -1 6 1671 367 300 141 14 chr3 142439674 142439816 -17159967 + RSINE1 SINE B4 2 161 -4 6 1671 361 252 174 62 chr3 142439866 142440027 -17159756 - B3 SINE B2 -29 187 9 6 1671 212 234 0 0 chr3 142440594 142440641 -17159142 + CT-rich Low_complexity Low_complexity 2 48 0 6 1671 382 172 196 75 chr3 142440641 142440748 -17159035 - PB1D9 SINE Alu 0 120 1 6 1671 252 299 34 93 chr3 142440791 142440909 -17158874 - PB1D10 SINE Alu 0 117 7 6 1671 4078 36 0 0 chr3 142441450 142441917 -17157866 - MERVL-int LTR ERVL -964 4521 4055 6 1671 330 250 231 8 chr3 142441961 142442078 -17157705 + B3 SINE B2 23 165 -51 6 1671 228 35 0 0 chr3 142442078 142442107 -17157676 + (CA)n Simple_repeat Simple_repeat 2 30 0 6 1671 401 263 30 0 chr3 142442159 142442258 -17157525 - RMER15 LTR ERVL -1 574 473 6 1671 281 247 0 118 chr3 142442290 142442400 -17157383 + PB1D9 SINE Alu 23 119 -1 6 1671 1347 100 26 0 chr3 142443273 142443463 -17156320 - B2_Mm2 SINE B2 0 195 1 6 1671 58 28 0 0 chr3 142444190 142444262 -17155521 + AT_rich Low_complexity Low_complexity 1 72 0 6 1671 402 262 23 54 chr3 142444949 142445078 -17154705 - RMER10B LTR ERVL -5 393 269 6 1671 293 312 13 0 chr3 142445306 142445383 -17154400 - Lx8 LINE L1 -250 7223 7146 6 1671 433 189 0 0 chr3 142445392 142445466 -17154317 - ID_B1 SINE B4 0 224 151 6 1671 891 202 99 65 chr3 142445596 142445961 -17153822 - RMER6B LTR ERVK 0 461 1 6 1671 306 273 76 114 chr3 142448287 142448498 -17151285 - RLTR14 LTR ERV1 -26 356 154 6 1671 337 186 0 0 chr3 142448956 142449015 -17150768 + B1_Mur4 SINE Alu 1 59 -91 6 1671 234 284 13 13 chr3 142449015 142449031 -17150752 + B4A SINE B4 86 160 -132 7 1671 443 308 34 14 chr3 142449166 142449314 -17150469 + B4A SINE B4 142 292 0 7 1671 404 273 274 24 chr3 142450052 142450348 -17149435 - MER21B LTR ERV1 -156 707 338 7 1671 273 292 146 0 chr3 142450383 142450479 -17149304 - PB1D7 SINE Alu -6 114 5 7 1671 248 329 0 37 chr3 142450409 142450491 -17149292 - ID_B1 SINE B4 -69 155 77 7 1671 363 336 95 58 chr3 142451681 142451924 -17147859 - ORR1E LTR MaLR -107 252 1 7 1671 889 153 194 11 chr3 142452653 142452844 -17146939 - URR1A DNA MER1_type 0 226 1 7 1671 346 326 7 0 chr3 142452966 142453110 -17146673 - L1M5 LINE L1 -2259 3887 3743 7 1671 941 168 118 10 chr3 142453940 142454144 -17145639 - URR1A DNA MER1_type 0 226 1 7 1671 23 0 0 0 chr3 142454696 142454719 -17145064 + AT_rich Low_complexity Low_complexity 1 23 0 7 1671 511 216 156 36 chr3 142457589 142457781 -17142002 + ID_B1 SINE B4 1 215 -9 7 1671 362 312 9 9 chr3 142457824 142457934 -17141849 + PB1D7 SINE Alu 1 110 -10 7 1671 2421 228 86 108 chr3 142458533 142458988 -17140795 + RMER1B Other Other 121 558 -508 7 1671 441 0 0 0 chr3 142458988 142459037 -17140746 + (TG)n Simple_repeat Simple_repeat 1 49 0 7 1671 297 0 0 0 chr3 142459037 142459069 -17140714 + (GA)n Simple_repeat Simple_repeat 1 33 0 7 1671 2421 228 86 108 chr3 142459069 142459576 -17140207 + RMER1B Other Other 559 1062 -4 7 1671 714 168 56 0 chr3 142459918 142460043 -17139740 - B1_Mur4 SINE Alu -9 141 10 7 1671 696 215 20 27 chr3 142460994 142461142 -17138641 - B1_Mus2 SINE Alu 0 147 1 7 1671 504 257 9 9 chr3 142461212 142461318 -17138465 - B3A SINE B2 -89 109 4 7 1671 21 36 0 0 chr3 142461370 142461398 -17138385 + AT_rich Low_complexity Low_complexity 1 28 0 7 1671 357 294 58 19 chr3 142461436 142461540 -17138243 - PB1D10 SINE Alu -9 108 1 7 1671 535 148 23 0 chr3 142463177 142463265 -17136518 - PB1D9 SINE Alu -6 114 25 7 1671 249 316 13 13 chr3 142464585 142464662 -17135121 - PB1D10 SINE Alu -5 112 36 7 1671 440 202 101 0 chr3 142464708 142464797 -17134986 + B3 SINE B2 113 210 -6 7 1671 28 0 0 0 chr3 142464812 142464840 -17134943 + AT_rich Low_complexity Low_complexity 1 28 0 7 1671 370 327 57 66 chr3 142465094 142465412 -17134371 - L2 LINE L2 -779 2640 2326 7 1671 328 315 92 9 chr3 142465649 142465758 -17134025 + B1F1 SINE Alu 15 132 -17 7 1671 1341 80 16 11 chr3 142466055 142466069 -17133714 - B2_Mm2 SINE B2 0 195 182 7 1671 252 0 0 0 chr3 142466069 142466097 -17133686 + (TG)n Simple_repeat Simple_repeat 1 28 0 7 1671 1341 80 16 11 chr3 142466097 142466272 -17133511 - B2_Mm2 SINE B2 -14 181 6 7 1671 28 79 0 0 chr3 142466746 142466809 -17132974 + AT_rich Low_complexity Low_complexity 1 63 0 7 1671 27 0 0 0 chr3 142467372 142467399 -17132384 + AT_rich Low_complexity Low_complexity 1 27 0 7 1671 1062 86 0 17 chr3 142467558 142467736 -17132047 + Lx3_Mus LINE L1 6835 7009 0 7 1671 554 248 29 21 chr3 142468072 142468212 -17131571 + B1_Mur2 SINE Alu 2 142 -7 7 1671 480 86 0 0 chr3 142468212 142468282 -17131501 + (CCAA)n Simple_repeat Simple_repeat 2 71 0 7 1671 447 271 29 88 chr3 142468418 142468588 -17131195 - RSINE1 SINE B4 -4 161 2 7 1671 297 0 0 0 chr3 142468652 142468685 -17131098 + (CA)n Simple_repeat Simple_repeat 2 34 0 7 1671 204 67 0 0 chr3 142469040 142469070 -17130713 + (CAAAC)n Simple_repeat Simple_repeat 2 31 0 7 1671 215 236 0 0 chr3 142469281 142469336 -17130447 + T-rich Low_complexity Low_complexity 1 55 0 7 1671 869 67 170 7 chr3 142469362 142469497 -17130286 - B2_Mm2 SINE B2 -14 181 25 7 1671 24 0 0 0 chr3 142469514 142469538 -17130245 + AT_rich Low_complexity Low_complexity 1 24 0 7 1671 650 196 246 11 chr3 142469886 142470061 -17129722 - B3 SINE B2 0 216 1 7 1671 2279 33 0 0 chr3 142470585 142470855 -17128928 + L1Md_T LINE L1 6313 6582 0 7 1671 373 296 94 35 chr3 142470873 142471076 -17128707 - B3 SINE B2 -1 215 1 7 1671 572 263 151 0 chr3 142471373 142471552 -17128231 + B3 SINE B2 9 214 -2 7 1671 537 231 40 34 chr3 142471571 142471719 -17128064 + B1_Mur2 SINE Alu 1 149 0 7 1671 229 288 110 0 chr3 142471767 142471840 -17127943 + RSINE1 SINE B4 3 83 -82 7 1671 415 125 0 0 chr3 142471934 142472006 -17127777 - Lx4A LINE L1 -2 7056 6985 7 1671 240 299 14 29 chr3 142474201 142474270 -17125513 + B1_Mus1 SINE Alu 1 68 -80 7 1671 336 265 65 22 chr3 142474646 142474822 -17124961 - MIR3 SINE MIR -23 185 6 7 1672 280 333 35 58 chr3 142475938 142476220 -17123563 + MTEa LTR MaLR 80 362 -17 7 1672 448 310 104 58 chr3 142476446 142476706 -17123077 + B4A SINE B4 1 272 -20 7 1672 622 288 50 11 chr3 142479111 142479128 -17120655 - B3A SINE B2 -6 192 175 7 1672 281 82 20 0 chr3 142479128 142479177 -17120606 + (TG)n Simple_repeat Simple_repeat 2 51 0 7 1672 622 288 50 11 chr3 142479177 142479338 -17120445 - B3A SINE B2 -24 174 7 7 1672 230 300 68 20 chr3 142479717 142479840 -17119943 + MIRc SINE MIR 36 167 -101 7 1672 308 337 48 47 chr3 142479973 142480211 -17119572 + MIR SINE MIR 7 229 -33 7 1672 479 266 9 9 chr3 142480540 142480654 -17119129 - B3A SINE B2 -82 116 3 7 1672 246 367 11 0 chr3 142480995 142481085 -17118698 + PB1D10 SINE Alu 27 117 0 7 1672 181 362 58 0 chr3 142481554 142481623 -17118160 + L2b LINE L2 3287 3359 -16 7 1672 384 219 28 31 chr3 142483311 142483424 -17116359 + B1F2 SINE Alu 13 147 -2 7 1672 1242 111 21 5 chr3 142485072 142485262 -17114521 + B2_Mm2 SINE B2 1 193 -2 7 1672 1958 107 15 68 chr3 142485339 142485679 -17114104 + Lx3B LINE L1 6649 6970 -3 7 1672 29 28 0 0 chr3 142485815 142485851 -17113932 + AT_rich Low_complexity Low_complexity 1 36 0 7 1672 27 49 0 0 chr3 142485923 142485964 -17113819 + AT_rich Low_complexity Low_complexity 1 41 0 7 1672 204 67 0 0 chr3 142486150 142486180 -17113603 + (CAAAC)n Simple_repeat Simple_repeat 2 31 0 7 1672 249 190 23 102 chr3 142486217 142486305 -17113478 + L1MEc LINE L1 135 215 -6185 7 1672 770 278 159 33 chr3 142486412 142487055 -17112728 + L1MEc LINE L1 430 1153 -5247 7 1672 318 224 84 0 chr3 142487253 142487360 -17112423 + L1MEc LINE L1 1432 1547 -4853 7 1672 447 255 28 0 chr3 142488099 142488205 -17111578 - PB1D10 SINE Alu -2 115 7 7 1672 248 271 81 36 chr3 142488692 142488803 -17110980 + L1MC1 LINE L1 5890 6005 -1780 7 1672 286 300 50 0 chr3 142488931 142489031 -17110752 + L1MC1 LINE L1 6087 6191 -142 7 1672 292 324 111 66 chr3 142489741 142489939 -17109844 + MER21B LTR ERV1 98 304 -559 7 1672 435 252 154 32 chr3 142490604 142490981 -17108802 + L1MB5 LINE L1 2147 2569 -3577 7 1672 374 287 108 62 chr3 142490982 142491274 -17108509 + L1MB5 LINE L1 5455 5758 -422 7 1672 267 274 147 0 chr3 142491386 142491488 -17108295 + L1MB5 LINE L1 5955 6071 -103 7 1672 214 266 203 0 chr3 142491532 142491596 -17108187 - BC1_Mm scRNA scRNA -70 82 6 7 1672 392 236 109 0 chr3 142491607 142491717 -17108066 - PB1 SINE Alu -4 123 2 7 1672 774 289 87 11 chr3 142492552 142492839 -17106944 + MER2 DNA MER2_type 37 345 0 7 1672 210 118 0 0 chr3 142492888 142492922 -17106861 + (A)n Simple_repeat Simple_repeat 1 34 0 7 1672 961 208 18 45 chr3 142493160 142493382 -17106401 - B3 SINE B2 0 216 1 7 1672 555 202 43 9 chr3 142493698 142493813 -17105970 - PB1D9 SINE Alu -1 119 1 7 1672 324 0 0 0 chr3 142493831 142493867 -17105916 + (CA)n Simple_repeat Simple_repeat 2 37 0 7 1672 268 241 16 65 chr3 142493971 142494033 -17105750 - ID4_ SINE ID -11 72 14 7 1672 464 310 69 4 chr3 142494250 142494496 -17105287 - L1MA9 LINE L1 -216 6096 5835 7 1672 24 0 0 0 chr3 142494512 142494536 -17105247 + AT_rich Low_complexity Low_complexity 1 24 0 7 1672 793 200 15 0 chr3 142494537 142494672 -17105111 - B1_Mus1 SINE Alu -1 147 11 7 1672 279 343 88 0 chr3 142494717 142494854 -17104929 - RSINE1 SINE B4 -1 164 16 7 1672 251 211 49 73 chr3 142494864 142494946 -17104837 - L1MA9 LINE L1 -468 5823 5744 7 1672 532 333 0 18 chr3 142495150 142495315 -17104468 + B3A SINE B2 36 197 -1 7 1672 391 274 36 0 chr3 142495829 142495913 -17103870 - ID_B1 SINE B4 -11 213 127 7 1672 238 323 65 0 chr3 142495910 142495923 -17103860 - B4A SINE B4 -192 100 2 7 1672 245 316 12 12 chr3 142495923 142496003 -17103780 - BC1_Mm scRNA scRNA -71 81 2 7 1672 1863 141 74 33 chr3 142496620 142497001 -17102782 + Lx4A LINE L1 6615 7057 -1 7 1672 281 26 26 0 chr3 142497030 142497068 -17102715 + (CA)n Simple_repeat Simple_repeat 2 40 0 7 1672 510 57 0 0 chr3 142497068 142497137 -17102646 + (GA)n Simple_repeat Simple_repeat 2 71 0 7 1672 739 236 34 48 chr3 142497138 142497347 -17102436 - Lx6 LINE L1 -24 7436 7231 7 1672 576 230 58 15 chr3 142497367 142497496 -17102287 + B1_Mur1 SINE Alu 6 142 -7 7 1672 195 129 0 0 chr3 142497496 142497527 -17102256 + (TGGA)n Simple_repeat Simple_repeat 3 33 0 7 1672 212 260 68 14 chr3 142498240 142498314 -17101469 - L2a LINE L2 -71 3355 3278 7 1672 218 292 58 13 chr3 142498329 142498463 -17101320 + B1_Mus2 SINE Alu 7 147 -2 7 1672 284 384 90 11 chr3 142498669 142498935 -17100848 - L2a LINE L2 -342 3077 2791 7 1672 388 330 0 9 chr3 142499471 142499584 -17100199 - PB1D10 SINE Alu -5 112 1 7 1672 313 314 114 0 chr3 142500397 142500502 -17099281 + PB1D9 SINE Alu 1 117 -3 1 1672 289 322 0 0 chr3 142500519 142500606 -17099177 + Lx8 LINE L1 6870 6956 -517 2 1672 380 191 11 0 chr3 142501034 142501123 -17098660 + (TA)n Simple_repeat Simple_repeat 1 90 0 3 1672 579 289 6 30 chr3 142501145 142501309 -17098474 + RSINE1 SINE B4 3 162 -3 4 1672 483 351 63 17 chr3 142501876 142502163 -17097620 + MER82 DNA MER2_type 348 647 -6 5 1672 336 309 52 21 chr3 142502674 142502770 -17097013 + B1F1 SINE Alu 13 111 -38 6 1672 254 349 0 68 chr3 142502770 142502784 -17096999 + ID_B1 SINE B4 124 202 -22 7 1672 187 398 77 12 chr3 142503166 142503334 -17096449 + L3 LINE CR1 4229 4407 -82 8 1672 247 140 36 91 chr3 142503626 142503681 -17096102 + ID_B1 SINE B4 171 222 -2 9 1672 467 301 28 7 chr3 142504270 142504414 -17095369 - RSINE1 SINE B4 -14 151 5 1 1672 662 246 65 27 chr3 142504549 142504733 -17095050 - B3 SINE B2 0 216 26 1 1672 425 280 51 7 chr3 142505833 142505986 -17093797 + L1M5 LINE L1 5434 5584 -610 1 1672 34106 61 5 5 chr3 142505993 142511018 -17088765 + L1Md_F3 LINE L1 607 5586 -297 1 1672 7956 38 6 24 chr3 142511018 142511449 -17088334 + L1Md_F3 LINE L1 5587 6018 -566 1 1672 1446 74 5 0 chr3 142511449 142511639 -17088144 + B2_Mm1t SINE B2 2 192 -1 1 1672 7956 38 6 24 chr3 142511639 142512223 -17087560 + L1Md_F3 LINE L1 6019 6584 0 1 1672 877 250 85 60 chr3 142512267 142512577 -17087206 - L1M3 LINE L1 -1839 4301 4001 1 1672 420 20 0 0 chr3 142512577 142512626 -17087157 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 1672 877 250 85 60 chr3 142512626 142512715 -17087068 - L1M3 LINE L1 -2140 4000 3892 1 1672 1175 61 0 0 chr3 142512842 142512989 -17086794 - B1_Mus2 SINE Alu 0 147 1 1 1672 509 317 102 83 chr3 142513286 142513551 -17086232 + B4 SINE B4 3 272 -20 1 1672 315 0 0 0 chr3 142513589 142513624 -17086159 + (CA)n Simple_repeat Simple_repeat 2 36 0 1 1672 1125 82 0 0 chr3 142513988 142514135 -17085648 + B1_Mus2 SINE Alu 1 147 0 2 1672 792 115 0 0 chr3 142515457 142515579 -17084204 + (GAAA)n Simple_repeat Simple_repeat 4 125 0 2 1672 405 0 0 0 chr3 142515579 142515623 -17084160 + (GGGA)n Simple_repeat Simple_repeat 1 45 0 2 1672 465 225 100 0 chr3 142515628 142515748 -17084035 + B1_Mur4 SINE Alu 2 133 -17 2 1672 198 71 0 0 chr3 142515879 142515907 -17083876 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 2 1672 332 229 118 142 chr3 142515921 142516048 -17083735 - RSINE1 SINE B4 -40 125 2 2 1672 404 292 35 9 chr3 142516926 142517040 -17082743 + PB1D10 SINE Alu 1 117 0 2 1672 191 380 52 20 chr3 142517124 142517277 -17082506 + MIRb SINE MIR 95 252 -16 2 1672 243 189 0 0 chr3 142518187 142518240 -17081543 + (TTCA)n Simple_repeat Simple_repeat 1 53 0 2 1672 254 315 0 0 chr3 142518248 142518321 -17081462 - ID4 SINE ID -10 73 1 2 1672 403 267 50 134 chr3 142518601 142518839 -17080944 - MER119 DNA MER1_type 0 583 366 3 1672 184 59 59 0 chr3 142519345 142519379 -17080404 + (TC)n Simple_repeat Simple_repeat 1 36 0 3 1672 377 244 130 0 chr3 142519897 142520012 -17079771 + B1F2 SINE Alu 19 148 -1 3 1672 322 286 92 38 chr3 142520012 142520026 -17079757 + B4A SINE B4 104 239 -53 3 1672 237 155 0 0 chr3 142520376 142520434 -17079349 + A-rich Low_complexity Low_complexity 1 58 0 3 1672 716 260 93 64 chr3 142521373 142521816 -17077967 - L1MA4 LINE L1 -195 5961 5508 3 1672 304 336 48 169 chr3 142522030 142522385 -17077398 + MLT1H LTR MaLR 123 434 -115 3 1672 364 290 24 137 chr3 142522748 142522916 -17076867 - L1MC3 LINE L1 -1207 6578 6430 3 1672 984 62 0 0 chr3 142523682 142523810 -17075973 - B1_Mus2 SINE Alu -3 144 17 3 1672 608 243 134 11 chr3 142524078 142524257 -17075526 + B3 SINE B2 3 203 -13 3 1672 1815 171 93 6 chr3 142524305 142524658 -17075125 + ORR1C2 LTR MaLR 1 384 0 4 1672 562 187 62 41 chr3 142524892 142525037 -17074746 + B1_Mur1 SINE Alu 2 149 0 4 1672 187 367 39 15 chr3 142525374 142525504 -17074279 + L2 LINE L2 2489 2621 -798 4 1672 309 208 62 38 chr3 142526480 142526560 -17073223 + ID4_ SINE ID 2 83 0 4 1672 258 217 16 48 chr3 142527061 142527124 -17072659 + B4 SINE B4 2 62 -230 4 1672 408 88 0 0 chr3 142527125 142527182 -17072601 + (TG)n Simple_repeat Simple_repeat 1 57 0 4 1672 1352 70 0 36 chr3 142527463 142527655 -17072128 + B2_Mm2 SINE B2 2 186 -9 4 1672 579 128 0 0 chr3 142527676 142527762 -17072021 + B2_Mm1t SINE B2 94 179 -14 4 1672 1835 173 39 14 chr3 142527833 142528190 -17071593 + ORR1D1 LTR MaLR 1 366 -8 4 1672 695 144 151 8 chr3 142528602 142528728 -17071055 - B1_Mus2 SINE Alu -2 145 2 4 1672 445 198 48 19 chr3 142528636 142528739 -17071044 - MT2B LTR ERVL -343 258 153 5 1672 675 284 25 22 chr3 142529179 142529381 -17070402 - B3A SINE B2 -14 202 3 5 1672 212 0 36 0 chr3 142529667 142529695 -17070088 + (TTTG)n Simple_repeat Simple_repeat 3 31 0 5 1672 398 232 51 31 chr3 142529702 142529800 -17069983 - PB1D7 SINE Alu -2 118 19 5 1672 254 95 24 0 chr3 142530508 142530550 -17069233 + (TTTC)n Simple_repeat Simple_repeat 2 44 0 5 1672 894 141 141 37 chr3 142531488 142531679 -17068104 - B3 SINE B2 -5 211 1 5 1672 417 290 0 88 chr3 142532187 142532211 -17067572 + ID_B1 SINE B4 70 224 0 5 1672 783 158 0 48 chr3 142532211 142532357 -17067426 + B1_Mus2 SINE Alu 9 147 0 5 1672 712 189 49 0 chr3 142532465 142532608 -17067175 - B1_Mur4 SINE Alu 0 150 1 5 1672 312 116 0 0 chr3 142532771 142532814 -17066969 + MER33 DNA MER1_type 9 51 -273 5 1672 613 230 16 0 chr3 142533152 142533278 -17066505 - B1_Mur1 SINE Alu -1 148 21 6 1672 401 50 0 16 chr3 142534077 142534138 -17065645 + (GAAA)n Simple_repeat Simple_repeat 3 62 0 6 1672 21 36 0 0 chr3 142534316 142534344 -17065439 + AT_rich Low_complexity Low_complexity 1 28 0 6 1672 318 323 46 8 chr3 142535182 142535313 -17064470 + B1F1 SINE Alu 10 145 -4 6 1672 564 225 223 36 chr3 142535648 142535814 -17063969 - B3 SINE B2 -19 197 1 6 1672 232 221 195 11 chr3 142536541 142536628 -17063155 - PB1D9 SINE Alu -13 107 5 6 1672 232 273 73 0 chr3 142536964 142537019 -17062764 + ID_B1 SINE B4 78 136 -88 6 1672 343 268 144 0 chr3 142536970 142537067 -17062716 + PB1D10 SINE Alu 7 117 0 6 1672 384 40 0 0 chr3 142537686 142537736 -17062047 + (TC)n Simple_repeat Simple_repeat 1 50 0 6 1672 387 0 0 0 chr3 142537736 142537778 -17062005 + (CA)n Simple_repeat Simple_repeat 1 43 0 6 1672 536 42 0 14 chr3 142538948 142539020 -17060763 + (GAAA)n Simple_repeat Simple_repeat 2 72 0 7 1672 937 192 0 52 chr3 142539083 142539275 -17060508 + B3A SINE B2 1 182 -16 7 1672 429 361 96 30 chr3 142539382 142539745 -17060038 + L1ME3B LINE L1 5470 5856 -384 7 1672 367 390 31 0 chr3 142540383 142540542 -17059241 + MER2B DNA MER2_type 167 330 -6 7 1672 267 179 155 86 chr3 142540547 142540663 -17059120 - MER2 DNA MER2_type -150 195 72 7 1672 616 246 13 34 chr3 142540656 142540854 -17058929 - B3 SINE B2 -6 189 6 7 1672 354 167 75 25 chr3 142540917 142540997 -17058786 - B1_Mur2 SINE Alu -9 140 57 7 1672 705 231 7 0 chr3 142541290 142541437 -17058346 - B1_Mur2 SINE Alu 0 149 2 7 1672 256 364 84 15 chr3 142541438 142541569 -17058214 + MIR SINE MIR 102 241 -21 7 1672 183 80 0 0 chr3 142543062 142543087 -17056696 + (A)n Simple_repeat Simple_repeat 1 25 0 7 1672 324 0 0 0 chr3 142543925 142543961 -17055822 + (TC)n Simple_repeat Simple_repeat 2 37 0 8 1672 23 54 0 0 chr3 142544345 142544382 -17055401 + GC_rich Low_complexity Low_complexity 1 37 0 8 1672 22 88 0 0 chr3 142544466 142544523 -17055260 + GC_rich Low_complexity Low_complexity 1 57 0 8 1672 26 50 0 0 chr3 142544801 142544841 -17054942 + GC_rich Low_complexity Low_complexity 1 40 0 8 1672 683 197 0 0 chr3 142546909 142547031 -17052752 + B1_Mur1 SINE Alu 2 123 -26 8 1672 240 143 0 0 chr3 142547653 142547709 -17052074 + (TC)n Simple_repeat Simple_repeat 1 56 0 8 1672 297 0 0 0 chr3 142547709 142547742 -17052041 + (TG)n Simple_repeat Simple_repeat 2 34 0 8 1672 813 246 114 55 chr3 142548279 142548533 -17051250 + B4 SINE B4 8 276 -16 8 1672 300 236 97 43 chr3 142549040 142549133 -17050650 - ID2 SINE ID -54 98 1 8 1672 465 206 31 0 chr3 142549150 142549247 -17050536 - PB1D10 SINE Alu -12 105 6 8 1672 247 268 18 0 chr3 142549498 142549554 -17050229 - MLT1I LTR MaLR -116 295 239 9 1672 438 157 97 44 chr3 142549873 142549986 -17049797 + PB1D9 SINE Alu 2 120 0 9 1672 621 90 0 0 chr3 142550147 142550236 -17049547 + (TG)n Simple_repeat Simple_repeat 2 90 0 9 1672 1115 187 61 102 chr3 142551249 142551613 -17048170 - Lx7 LINE L1 -16 7680 7112 9 1672 272 277 72 104 chr3 142551745 142551870 -17047913 - MTEa LTR MaLR -8 371 251 9 1672 681 272 56 35 chr3 142552002 142552234 -17047549 + MLT1A0 LTR MaLR 117 353 -12 9 1672 1150 112 17 11 chr3 142552329 142552509 -17047274 - B2_Mm2 SINE B2 0 195 15 9 1672 294 322 153 40 chr3 142552425 142552674 -17047109 - Charlie1 DNA MER1_type -2451 330 54 9 1672 403 277 65 45 chr3 142552793 142552948 -17046835 - MLT1A1 LTR MaLR 0 408 251 9 1672 1707 196 21 26 chr3 142553012 142553352 -17046431 - MTC LTR MaLR -8 413 76 9 1672 2066 167 55 10 chr3 142553355 142553755 -17046028 + MTC LTR MaLR 3 420 -1 1 1672 493 141 0 13 chr3 142553757 142553836 -17045947 - MTC LTR MaLR -343 78 1 9 1672 484 243 18 27 chr3 142553951 142554061 -17045722 - PB1D10 SINE Alu -6 111 3 1 1672 714 213 14 113 chr3 142554758 142554980 -17044803 - MT2A LTR ERVL -16 517 318 1 1672 330 209 30 0 chr3 142554985 142555052 -17044731 - MT2A LTR ERVL -361 172 104 1 1672 1176 204 206 9 chr3 142555052 142555373 -17044410 - ORR1C2 LTR MaLR 0 384 1 1 1672 662 188 68 0 chr3 142555379 142555512 -17044271 - MT2A LTR ERVL -391 142 1 1 1672 265 340 90 30 chr3 142555938 142556038 -17043745 - MLT1A1 LTR MaLR -329 183 78 9 1672 398 329 149 14 chr3 142556233 142556514 -17043269 + MLT1G3 LTR MaLR 227 545 -50 1 1672 710 95 9 0 chr3 142558912 142559028 -17040755 - ORR1A4 LTR MaLR -212 117 1 1 1672 835 295 15 21 chr3 142559028 142559357 -17040426 + L1MA5 LINE L1 4599 4925 -1218 1 1672 808 147 216 9 chr3 142559404 142559591 -17040192 + B3 SINE B2 11 216 0 1 1672 696 204 250 0 chr3 142559599 142559771 -17040012 + B3 SINE B2 1 215 -1 1 1672 1002 281 102 52 chr3 142559781 142560742 -17039041 + L1MA5 LINE L1 4927 5938 -362 1 1672 198 103 0 0 chr3 142561492 142561521 -17038262 + (A)n Simple_repeat Simple_repeat 1 29 0 1 1672 21 0 0 0 chr3 142561598 142561619 -17038164 + AT_rich Low_complexity Low_complexity 1 21 0 1 1672 980 194 39 10 chr3 142561822 142562025 -17037758 - B3 SINE B2 -5 211 3 1 1672 379 245 154 35 chr3 142562373 142562659 -17037124 - L1M4c LINE L1 -3802 2574 2256 1 1672 629 242 140 49 chr3 142562679 142562944 -17036839 - Lx8 LINE L1 0 7473 7185 1 1672 3499 248 76 55 chr3 142563184 142563666 -17036117 + L1_Mur3 LINE L1 3918 4427 -1453 1 1672 860 93 245 7 chr3 142563666 142563817 -17035966 - B2_Mm2 SINE B2 -7 188 2 1 1672 3499 248 76 55 chr3 142563817 142564684 -17035099 + L1_Mur3 LINE L1 4428 5295 -585 1 1672 213 65 0 0 chr3 142564857 142564888 -17034895 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 1 1672 342 226 0 19 chr3 142564889 142564993 -17034790 - Lx5 LINE L1 0 7050 6949 1 1672 4970 161 97 17 chr3 142564998 142565948 -17033835 - Lx5 LINE L1 -393 6657 5632 1 1672 491 200 20 8 chr3 142565940 142566064 -17033719 + L1_Mur3 LINE L1 5306 5458 -422 1 1672 605 49 12 0 chr3 142566284 142566365 -17033418 + (GA)n Simple_repeat Simple_repeat 1 82 0 1 1672 1033 92 21 0 chr3 142566587 142566729 -17033054 + B1_Mus1 SINE Alu 2 146 -2 1 1672 2291 151 42 2 chr3 142566822 142567227 -17032556 + RMER4A LTR ERVK 3 423 -43 1 1672 33223 70 5 1 chr3 142567632 142572810 -17026973 + L1Md_F2 LINE L1 387 5586 -297 1 1672 8525 35 1 0 chr3 142572810 142573805 -17025978 + L1Md_F2 LINE L1 5587 6582 0 1 1672 245 169 0 17 chr3 142574793 142574853 -17024930 + (TG)n Simple_repeat Simple_repeat 1 59 0 1 1672 339 317 95 99 chr3 142574897 142575170 -17024613 - B4 SINE B4 -20 272 1 1 1672 228 286 157 39 chr3 142575271 142575373 -17024410 - PB1D10 SINE Alu -1 116 3 1 1672 661 185 0 8 chr3 142575398 142575518 -17024265 - PB1D9 SINE Alu 0 120 2 1 1672 211 299 75 0 chr3 142575983 142576050 -17023733 + ID4_ SINE ID 2 73 -10 1 1672 582 208 154 0 chr3 142576433 142576563 -17023220 + B3A SINE B2 1 150 -48 1 1672 390 21 0 0 chr3 142576563 142576610 -17023173 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 1672 1139 117 0 6 chr3 142576664 142576845 -17022938 + (TTCCC)n Simple_repeat Simple_repeat 1 180 0 1 1672 297 0 0 0 chr3 142576845 142576878 -17022905 + (TCCCC)n Simple_repeat Simple_repeat 4 36 0 1 1672 1103 119 0 6 chr3 142576878 142577055 -17022728 + (TCTCC)n Simple_repeat Simple_repeat 2 177 0 1 1672 243 270 95 48 chr3 142577067 142577172 -17022611 - PB1D10 SINE Alu -7 110 1 1 1672 927 241 12 60 chr3 142577443 142577484 -17022299 - MTD LTR MaLR -179 240 201 1 1672 1507 57 10 5 chr3 142577484 142577677 -17022106 - B2_Mm2 SINE B2 0 195 2 1 1672 927 241 12 60 chr3 142577677 142577887 -17021896 - MTD LTR MaLR -219 200 1 1 1672 693 276 61 140 chr3 142578259 142578638 -17021145 - MTE-int LTR MaLR -39 1541 1193 1 1672 270 0 0 0 chr3 142578893 142578923 -17020860 + (TC)n Simple_repeat Simple_repeat 1 30 0 1 1672 568 221 49 14 chr3 142578946 142579088 -17020695 - B1F2 SINE Alu 0 149 3 1 1672 513 312 69 17 chr3 142579127 142579158 -17020625 - B3A SINE B2 -16 182 152 1 1672 501 17 0 0 chr3 142579158 142579216 -17020567 + (TA)n Simple_repeat Simple_repeat 2 59 0 1 1672 513 312 69 17 chr3 142579216 142579357 -17020426 - B3A SINE B2 -47 151 1 1 1672 421 187 91 27 chr3 142579410 142579520 -17020263 - B3A SINE B2 -77 121 5 1 1672 407 263 137 60 chr3 142580001 142580183 -17019600 + B3A SINE B2 3 198 0 1 1672 364 268 0 49 chr3 142581472 142581574 -17018209 - B1_Mur1 SINE Alu -2 147 51 1 1672 181 196 36 0 chr3 142581609 142581665 -17018118 + CT-rich Low_complexity Low_complexity 4 61 0 1 1672 365 228 9 38 chr3 142581699 142581804 -17017979 - B1F SINE Alu 0 149 48 1 1672 348 24 0 0 chr3 142581810 142581851 -17017932 + (TG)n Simple_repeat Simple_repeat 1 41 0 1 1672 288 290 26 0 chr3 142582170 142582274 -17017509 + MIRb SINE MIR 18 133 -135 1 1672 268 287 73 9 chr3 142582930 142583039 -17016744 - PB1D10 SINE Alu -1 116 1 1 1672 865 245 36 36 chr3 142583825 142584075 -17015708 + B4A SINE B4 29 278 -14 1 1672 189 107 0 0 chr3 142584129 142584157 -17015626 + (GGAA)n Simple_repeat Simple_repeat 2 29 0 1 1672 334 183 14 35 chr3 142584286 142584379 -17015404 - B1F SINE Alu -27 122 33 1 1672 491 269 52 29 chr3 142584552 142584724 -17015059 + RMER30 DNA MER1_type 26 201 -1 1 1672 487 281 62 15 chr3 142585495 142585655 -17014128 + MIR SINE MIR 21 188 -74 1 1672 1100 224 184 17 chr3 142585655 142586014 -17013769 + MTD LTR MaLR 1 419 0 1 1672 487 281 62 15 chr3 142586014 142586048 -17013735 + MIR SINE MIR 189 224 -38 1 1672 217 154 0 0 chr3 142586064 142586103 -17013680 + B4 SINE B4 1 39 -253 1 1672 877 269 15 71 chr3 142586126 142586462 -17013321 + Lx8 LINE L1 7154 7470 -3 1 1672 868 240 4 96 chr3 142586483 142586713 -17013070 + B4A SINE B4 84 292 0 1 1672 25 0 0 0 chr3 142588081 142588106 -17011677 + AT_rich Low_complexity Low_complexity 1 25 0 1 1672 849 175 0 0 chr3 142588371 142588641 -17011142 + (TG)n Simple_repeat Simple_repeat 1 270 0 1 1672 3408 178 64 24 chr3 142589523 142589616 -17010167 - RMER1B Other Other -12 1054 962 1 1672 357 24 0 0 chr3 142589616 142589658 -17010125 + (TC)n Simple_repeat Simple_repeat 1 42 0 1 1672 3408 237 57 31 chr3 142589658 142591148 -17008635 - RMER1B Other Other -105 961 65 1 1672 394 332 83 5 chr3 142591241 142591459 -17008324 + MIR SINE MIR 5 239 -23 1 1672 437 0 19 0 chr3 142591585 142591638 -17008145 + (TC)n Simple_repeat Simple_repeat 2 55 0 1 1672 258 303 27 53 chr3 142591748 142591803 -17007980 - B4A SINE B4 -65 227 100 1 1672 409 236 0 0 chr3 142591803 142591892 -17007891 - PB1D10 SINE Alu -26 91 3 1 1672 235 356 28 28 chr3 142592130 142592237 -17007546 - PB1D10 SINE Alu -5 112 6 1 1672 1242 263 96 38 chr3 142592265 142592799 -17006984 - L1MA8 LINE L1 -17 6274 5710 1 1672 1607 236 25 5 chr3 142592800 142593105 -17006678 - MTD LTR MaLR 0 419 110 1 1672 817 159 14 20 chr3 142593105 142593253 -17006530 + B1_Mus2 SINE Alu 1 147 0 1 1672 1607 236 25 5 chr3 142593253 142593344 -17006439 - MTD LTR MaLR -310 109 16 1 1672 391 176 27 0 chr3 142593356 142593430 -17006353 - L1M1 LINE L1 -605 5698 5623 1 1672 525 32 0 0 chr3 142594401 142594464 -17005319 + (GA)n Simple_repeat Simple_repeat 2 64 0 1 1672 196 222 107 40 chr3 142594555 142594630 -17005153 + L2a LINE L2 3337 3416 -10 1 1672 394 326 70 5 chr3 142595483 142595683 -17004100 + MIR SINE MIR 50 254 -14 1 1672 381 239 7 55 chr3 142595690 142595836 -17003947 - BC1_Mm scRNA scRNA -12 140 2 1 1672 327 294 0 11 chr3 142597466 142597559 -17002224 - B4A SINE B4 -9 283 192 1 1672 400 234 27 224 chr3 142597623 142597882 -17001901 + RLTR11B LTR ERVK 205 412 -41 1 1672 593 309 118 0 chr3 142599783 142600055 -16999728 + L3b LINE CR1 154 457 -25 1 1672 657 217 99 0 chr3 142600083 142600244 -16999539 - L1MC1 LINE L1 0 6333 6157 1 1672 3409 23 8 0 chr3 142600354 142600744 -16999039 - MTA_Mm LTR MaLR -2 394 2 1 1672 498 108 0 0 chr3 142601016 142601090 -16998693 + (TCTA)n Simple_repeat Simple_repeat 1 74 0 1 1672 249 329 72 12 chr3 142601090 142601256 -16998527 + MLT2B4 LTR ERVL 62 237 -319 1 1672 325 255 7 7 chr3 142601291 142601433 -16998350 + (TA)n Simple_repeat Simple_repeat 2 143 0 1 1672 562 270 126 0 chr3 142601480 142601654 -16998129 + ERVL-B4-int LTR ERVL 5 200 -5514 1 1672 1599 179 25 0 chr3 142601783 142602057 -16997726 - RMER1B Other Other -223 843 563 1 1672 272 215 14 58 chr3 142602057 142602126 -16997657 - RMER1A Other Other -859 171 106 1 1672 464 0 18 0 chr3 142602173 142602229 -16997554 + (TCTA)n Simple_repeat Simple_repeat 2 58 0 1 1672 294 29 0 0 chr3 142602238 142602273 -16997510 + (TC)n Simple_repeat Simple_repeat 1 35 0 1 1672 252 330 57 28 chr3 142602287 142602393 -16997390 - PB1D10 SINE Alu -5 112 4 1 1672 539 288 20 7 chr3 142602393 142602473 -16997310 - ID SINE ID -141 83 2 1 1672 243 270 32 73 chr3 142602550 142602674 -16997109 + LTR16D2 LTR ERVL 454 572 0 1 1672 452 340 92 58 chr3 142602789 142603407 -16996376 + L2 LINE L2 1948 2586 -833 1 1672 310 289 93 34 chr3 142603803 142604007 -16995776 + L2 LINE L2 2659 2874 -545 1 1672 324 313 31 71 chr3 142605194 142605390 -16994393 - RMER1C Other Other -1 1341 1154 1 1672 378 357 23 40 chr3 142605353 142605528 -16994255 - Lx8 LINE L1 -153 7320 7149 1 1673 1944 183 58 14 chr3 142606435 142606740 -16993043 + RMER4B LTR ERVK 17 333 -252 1 1673 3113 74 5 19 chr3 142606740 142607153 -16992630 + MTB_Mm LTR MaLR 1 407 0 1 1673 1944 184 40 19 chr3 142607153 142607373 -16992410 + RMER4B LTR ERVK 334 585 0 1 1673 378 236 75 9 chr3 142607376 142607483 -16992300 - RSINE1 SINE B4 -41 124 11 1 1673 348 254 139 9 chr3 142607546 142607661 -16992122 - MIRb SINE MIR -126 142 13 1 1673 2763 64 32 11 chr3 142607765 142608142 -16991641 + L1Md_F2 LINE L1 6197 6581 -1 1 1673 22 0 0 0 chr3 142609418 142609440 -16990343 + AT_rich Low_complexity Low_complexity 1 22 0 1 1673 1305 83 0 0 chr3 142610265 142610445 -16989338 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 1 1673 724 145 4 29 chr3 142610446 142610666 -16989117 + CT-rich Low_complexity Low_complexity 1 214 0 1 1673 1058 135 0 6 chr3 142610666 142610845 -16988938 + (TCCC)n Simple_repeat Simple_repeat 1 178 0 1 1673 724 117 5 38 chr3 142610845 142610861 -16988922 + polypyrimidine Low_complexity Low_complexity 2 17 0 2 1673 667 221 0 15 chr3 142610874 142611007 -16988776 - B1_Mur2 SINE Alu -13 136 6 2 1673 333 174 0 0 chr3 142611480 142611549 -16988234 + (CA)n Simple_repeat Simple_repeat 2 70 0 2 1673 504 278 197 22 chr3 142612829 142613203 -16986580 - L1MC4a LINE L1 -9 7873 7435 2 1673 327 200 153 0 chr3 142613272 142613357 -16986426 + MTD LTR MaLR 45 142 -277 2 1673 828 143 111 24 chr3 142613360 142613557 -16986226 + RMER6C LTR ERVK 4 279 -441 2 1673 434 210 120 0 chr3 142613748 142613848 -16985935 - ID_B1 SINE B4 -2 222 111 2 1673 479 175 173 71 chr3 142613946 142613992 -16985791 + MTC-int LTR MaLR 950 995 -263 2 1673 269 51 26 0 chr3 142613992 142614031 -16985752 + (TTAA)n Simple_repeat Simple_repeat 3 42 0 2 1673 479 175 173 71 chr3 142614031 142614181 -16985602 + MTC-int LTR MaLR 996 1165 -93 2 1673 685 149 61 0 chr3 142614188 142614302 -16985481 - B3 SINE B2 -81 135 15 2 1673 501 257 51 51 chr3 142614320 142614517 -16985266 - Lx6 LINE L1 -6 7454 7258 2 1673 687 184 40 25 chr3 142614539 142614720 -16985063 + MTC-int LTR MaLR 1092 1256 -2 2 1673 2207 155 108 3 chr3 142614722 142615103 -16984680 + MTC LTR MaLR 1 421 0 2 1673 1609 157 139 11 chr3 142615103 142615471 -16984312 + MTC-int LTR MaLR 3 417 -841 2 1673 234 62 0 0 chr3 142615487 142615519 -16984264 + (TC)n Simple_repeat Simple_repeat 1 32 0 2 1673 495 0 0 0 chr3 142615519 142615574 -16984209 + (TG)n Simple_repeat Simple_repeat 2 56 0 2 1673 1147 219 63 34 chr3 142615575 142615962 -16983821 + MTC-int LTR MaLR 740 1141 -117 2 1673 2252 165 35 12 chr3 142615962 142616368 -16983415 + MTC LTR MaLR 1 415 -6 2 1673 374 196 19 124 chr3 142616362 142616467 -16983316 - B4A SINE B4 -123 169 76 2 1673 222 275 145 0 chr3 142616517 142616586 -16983197 - MIRm SINE MIR -173 103 25 2 1673 957 278 119 6 chr3 142616876 142617195 -16982588 - ORR1E LTR MaLR 0 359 5 2 1673 254 29 0 28 chr3 142618766 142618802 -16980981 + (TA)n Simple_repeat Simple_repeat 1 35 0 2 1673 300 27 0 0 chr3 142618920 142618957 -16980826 + (CA)n Simple_repeat Simple_repeat 1 37 0 2 1673 190 333 25 13 chr3 142620050 142620129 -16979654 + L2a LINE L2 3320 3399 -27 2 1673 180 216 0 0 chr3 142620137 142620188 -16979595 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 2 1673 326 329 141 31 chr3 142620651 142620971 -16978812 - LTR16A LTR ERVL -2 449 95 2 1673 234 257 58 149 chr3 142621377 142621551 -16978232 - ORR1E LTR MaLR -125 234 77 2 1673 379 247 23 67 chr3 142621575 142621717 -16978066 - MLT1A1 LTR MaLR -274 134 1 2 1673 196 30 0 57 chr3 142622435 142622470 -16977313 + (TTA)n Simple_repeat Simple_repeat 1 33 0 2 1673 199 140 40 0 chr3 142622698 142622748 -16977035 + (TA)n Simple_repeat Simple_repeat 2 53 0 2 1673 1082 136 44 33 chr3 142622775 142622958 -16976825 - B2_Mm2 SINE B2 -9 186 2 2 1673 672 256 91 9 chr3 142624024 142624315 -16975468 - Charlie4a DNA MER1_type -163 345 28 2 1673 1677 278 64 18 chr3 142624373 142624923 -16974860 + Lx7 LINE L1 6737 7311 -385 2 1673 229 164 91 0 chr3 142624996 142625051 -16974732 + Lx7 LINE L1 7617 7676 -20 2 1673 240 35 0 0 chr3 142626756 142626785 -16972998 + (A)n Simple_repeat Simple_repeat 1 29 0 2 1673 181 395 12 0 chr3 142627705 142627791 -16971992 - L3b LINE CR1 -200 282 196 2 1673 680 270 113 0 chr3 142627797 142627982 -16971801 + B3 SINE B2 2 207 -9 2 1673 482 200 181 0 chr3 142628088 142628193 -16971590 + RSINE1 SINE B4 2 125 -40 2 1673 468 0 0 0 chr3 142628194 142628246 -16971537 + (CA)n Simple_repeat Simple_repeat 2 53 0 2 1673 704 297 128 38 chr3 142628263 142628529 -16971254 + B4 SINE B4 3 292 0 2 1673 189 0 0 0 chr3 142629820 142629841 -16969942 + (CAAA)n Simple_repeat Simple_repeat 4 24 0 2 1673 196 228 8 25 chr3 142630596 142630654 -16969129 + MIR SINE MIR 206 267 -1 2 1673 324 363 53 57 chr3 142630784 142631067 -16968716 - B4A SINE B4 -10 282 1 2 1673 3838 48 5 2 chr3 142631204 142631639 -16968144 + RLTR10C LTR ERVK 1 436 0 2 1673 281 222 32 0 chr3 142631941 142632004 -16967779 - ID4 SINE ID -18 65 1 2 1673 419 141 0 13 chr3 142632456 142632535 -16967248 + (TG)n Simple_repeat Simple_repeat 2 79 0 2 1673 5975 208 68 79 chr3 142634656 142635869 -16963914 - Lx7 LINE L1 -471 7225 6026 2 1673 369 0 0 0 chr3 142635869 142635910 -16963873 + (TCCA)n Simple_repeat Simple_repeat 3 43 0 2 1673 5975 180 32 50 chr3 142635910 142636524 -16963259 - Lx7 LINE L1 -1671 6025 5408 2 1673 1394 101 0 21 chr3 142636524 142636716 -16963067 + B2_Mm2 SINE B2 2 189 -6 2 1673 4445 172 21 41 chr3 142636716 142637148 -16962635 - Lx7 LINE L1 -473 5407 4994 2 1673 298 77 90 0 chr3 142637233 142637311 -16962472 + (TCTCTG)n Simple_repeat Simple_repeat 4 88 0 2 1673 346 247 49 0 chr3 142637343 142637424 -16962359 + RMER30 DNA MER1_type 99 183 -19 2 1673 615 27 0 0 chr3 142638972 142639045 -16960738 + (CA)n Simple_repeat Simple_repeat 1 73 0 2 1673 22 0 0 0 chr3 142639328 142639350 -16960433 + AT_rich Low_complexity Low_complexity 1 22 0 2 1673 715 320 74 23 chr3 142640584 142640840 -16958943 - B4 SINE B4 -22 270 2 2 1673 510 17 0 0 chr3 142644108 142644167 -16955616 + (GA)n Simple_repeat Simple_repeat 2 60 0 2 1673 4097 248 51 78 chr3 142645096 142645874 -16953909 + Lx5 LINE L1 5897 6610 -440 2 1673 3528 38 5 2 chr3 142645874 142646269 -16953514 - MTA_Mm LTR MaLR 0 396 1 2 1673 4097 248 51 78 chr3 142646269 142646672 -16953111 + Lx5 LINE L1 6611 7046 -4 2 1673 240 111 0 0 chr3 142646673 142646709 -16953074 + (TGGA)n Simple_repeat Simple_repeat 2 37 0 2 1673 228 297 134 8 chr3 142646781 142646900 -16952883 - MIRb SINE MIR -57 211 78 2 1673 897 242 152 48 chr3 142646999 142647329 -16952454 - MTEa LTR MaLR -8 371 8 2 1673 23 33 0 0 chr3 142648311 142648341 -16951442 + AT_rich Low_complexity Low_complexity 1 30 0 2 1673 602 255 0 0 chr3 142648429 142648544 -16951239 - ID_B1 SINE B4 -19 205 95 2 1673 247 300 144 0 chr3 142648579 142648759 -16951024 - Charlie23a DNA MER1_type -85 254 49 2 1673 492 384 85 33 chr3 142648902 142649476 -16950307 + Lx8 LINE L1 6870 7473 0 2 1673 199 93 0 44 chr3 142649481 142649526 -16950257 + (TAAAA)n Simple_repeat Simple_repeat 3 45 0 2 1673 22 56 0 0 chr3 142649819 142649855 -16949928 + AT_rich Low_complexity Low_complexity 1 36 0 2 1673 1141 275 25 82 chr3 142650102 142650502 -16949281 + MTE2a LTR MaLR 1 377 -2 2 1673 238 0 53 26 chr3 142650681 142650719 -16949064 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 2 1673 447 350 46 71 chr3 142651064 142651278 -16948505 + LTR33 LTR ERVL 46 271 -244 2 1673 353 302 55 36 chr3 142651437 142651602 -16948181 + LTR33 LTR ERVL 279 446 -69 2 1673 700 196 99 38 chr3 142651682 142651894 -16947889 - Lx7 LINE L1 -4 7692 7468 2 1673 435 87 0 0 chr3 142651983 142652052 -16947731 + (CA)n Simple_repeat Simple_repeat 2 70 0 2 1673 255 214 14 0 chr3 142652059 142652129 -16947654 - Lx7 LINE L1 -32 7664 7594 2 1673 2645 166 43 9 chr3 142652112 142652549 -16947234 - Lx7 LINE L1 -706 6990 6539 2 1673 197 194 0 0 chr3 142652684 142652720 -16947063 + MIRm SINE MIR 239 274 -2 2 1673 646 271 53 6 chr3 142652722 142652991 -16946792 + L1MA9 LINE L1 4412 4682 -1461 2 1673 27 0 0 0 chr3 142653101 142653128 -16946655 + AT_rich Low_complexity Low_complexity 1 27 0 2 1673 1285 50 25 0 chr3 142653137 142653297 -16946486 - L1_Mus1 LINE L1 0 6567 6404 2 1673 248 114 0 22 chr3 142653446 142653491 -16946292 - Lx2A LINE L1 -2025 3852 3809 2 1673 4212 115 5 0 chr3 142653491 142654067 -16945716 - Lx2A LINE L1 -1 7007 6429 2 1673 2202 136 11 6 chr3 142654067 142654412 -16945371 - Lx2A LINE L1 -683 6325 5978 2 1673 6769 102 9 11 chr3 142654408 142655426 -16944357 - L1_Mur2 LINE L1 -2057 3820 2805 2 1673 5411 143 38 1 chr3 142655426 142656243 -16943540 + Lx4A LINE L1 6210 7056 -2 2 1673 693 276 84 10 chr3 142656250 142656684 -16943099 + L1MA9 LINE L1 4969 5435 -743 2 1673 570 259 30 0 chr3 142656703 142656838 -16942945 + RSINE1 SINE B4 6 144 -21 2 1673 411 260 104 17 chr3 142656994 142657299 -16942484 + L1MA9 LINE L1 5606 5936 -376 2 1673 271 316 26 0 chr3 142657300 142657376 -16942407 - ID4_ SINE ID 0 83 6 2 1673 424 181 19 19 chr3 142657377 142657484 -16942299 + (TATATG)n Simple_repeat Simple_repeat 2 108 0 2 1673 488 235 132 20 chr3 142657571 142657772 -16942011 - MTE2b LTR MaLR -14 405 159 2 1673 333 0 0 0 chr3 142657902 142657939 -16941844 + (CA)n Simple_repeat Simple_repeat 2 38 0 2 1673 195 296 23 0 chr3 142658221 142658285 -16941498 + L2b LINE L2 3263 3370 -56 2 1673 830 94 0 8 chr3 142658581 142658699 -16941084 + Lx2 LINE L1 6872 6988 -9 2 1673 207 69 0 0 chr3 142658699 142658728 -16941055 + (TAA)n Simple_repeat Simple_repeat 2 30 0 2 1673 265 210 32 16 chr3 142659030 142659093 -16940690 + A-rich Low_complexity Low_complexity 2 65 0 2 1673 40 49 0 0 chr3 142660833 142660894 -16938889 + AT_rich Low_complexity Low_complexity 1 61 0 2 1673 240 211 13 26 chr3 142660963 142661041 -16938742 + A-rich Low_complexity Low_complexity 6 82 0 2 1673 21 0 0 0 chr3 142661073 142661094 -16938689 + AT_rich Low_complexity Low_complexity 1 21 0 2 1673 625 300 0 0 chr3 142661364 142661504 -16938279 - B1_Mur1 SINE Alu -9 140 1 2 1673 753 341 13 7 chr3 142661786 142662090 -16937693 - Lx9 LINE L1 -174 7470 7165 2 1673 423 0 0 0 chr3 142662106 142662153 -16937630 + (TC)n Simple_repeat Simple_repeat 2 48 0 2 1673 1083 286 51 0 chr3 142662154 142662430 -16937353 + Lx9 LINE L1 6345 6634 -1010 2 1673 222 62 0 0 chr3 142662434 142662466 -16937317 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 2 1673 1218 75 7 0 chr3 142662470 142662617 -16937166 - B1_Mus1 SINE Alu 0 148 1 2 1673 1262 287 38 0 chr3 142662622 142662936 -16936847 + Lx9 LINE L1 6625 6950 -694 2 1673 320 167 14 0 chr3 142664678 142664750 -16935033 + CT-rich Low_complexity Low_complexity 2 74 0 2 1673 546 222 68 53 chr3 142664760 142664893 -16934890 - B1_Mur2 SINE Alu -6 143 9 2 1673 617 244 53 15 chr3 142665413 142665546 -16934237 - ID_B1 SINE B4 -3 221 84 2 1673 814 314 136 37 chr3 142665838 142666353 -16933430 - MLT1E2 LTR MaLR -4 623 58 2 1673 558 263 156 31 chr3 142667117 142667309 -16932474 - ID_B1 SINE B4 -7 217 2 2 1673 22 35 0 0 chr3 142667460 142667489 -16932294 + AT_rich Low_complexity Low_complexity 1 29 0 2 1673 195 129 0 0 chr3 142670371 142670402 -16929381 + (T)n Simple_repeat Simple_repeat 1 31 0 2 1673 219 358 127 49 chr3 142672814 142673058 -16926725 + MIRc SINE MIR 2 264 -4 3 1673 180 0 0 0 chr3 142673111 142673131 -16926652 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 3 1673 467 176 0 3 chr3 142673138 142673241 -16926542 - B1_Mur1 SINE Alu -11 137 36 3 1673 391 237 50 40 chr3 142673642 142673743 -16926040 - MTE2a LTR MaLR 0 379 278 3 1673 441 266 88 9 chr3 142673833 142673947 -16925836 - PB1 SINE Alu -4 123 1 3 1673 1283 318 91 19 chr3 142674006 142674708 -16925075 + MER45B DNA Tip100 215 967 -73 3 1673 803 303 25 14 chr3 142674994 142675275 -16924508 + B4A SINE B4 3 286 -6 3 1673 509 301 0 16 chr3 142675536 142675725 -16924058 - L1MA6 LINE L1 -6 6294 6109 3 1673 297 265 0 38 chr3 142675955 142676061 -16923722 - L1MB2 LINE L1 -2 6169 6068 3 1673 599 250 97 29 chr3 142676822 142677028 -16922755 - ID_B1 SINE B4 -3 221 2 3 1673 300 91 0 0 chr3 142678826 142678870 -16920913 + (TG)n Simple_repeat Simple_repeat 1 44 0 3 1673 1948 125 64 0 chr3 142678920 142679249 -16920534 - Lx LINE L1 -5 6649 6300 3 1673 378 0 0 0 chr3 142679351 142679393 -16920390 + (TG)n Simple_repeat Simple_repeat 1 42 0 3 1673 183 42 0 0 chr3 142681741 142681765 -16918018 + (TTTTTG)n Simple_repeat Simple_repeat 2 25 0 3 1673 1372 131 8 4 chr3 142683088 142683325 -16916458 + Lx3B LINE L1 6079 6316 -657 3 1673 719 225 41 25 chr3 142683480 142683676 -16916107 - B3 SINE B2 -13 203 5 3 1673 340 284 53 0 chr3 142684419 142684514 -16915269 + ID_B1 SINE B4 110 209 -15 3 1673 191 244 43 43 chr3 142685924 142685971 -16913812 + MIR SINE MIR 21 67 -141 3 1673 566 290 94 47 chr3 142686170 142686262 -16913521 - RMER30 DNA MER1_type 0 202 107 3 1673 1335 90 21 11 chr3 142686262 142686453 -16913330 - B2_Mm2 SINE B2 -2 193 1 3 1673 566 290 94 47 chr3 142686453 142686552 -16913231 - RMER30 DNA MER1_type -96 106 2 3 1673 21 0 0 0 chr3 142686879 142686900 -16912883 + AT_rich Low_complexity Low_complexity 1 21 0 3 1673 305 337 85 40 chr3 142687544 142687745 -16912038 - ORR1E LTR MaLR -149 210 1 3 1673 33150 63 3 10 chr3 142688264 142694522 -16905261 - L1Md_F2 LINE L1 0 6582 371 3 1673 1031 97 0 7 chr3 142694565 142694720 -16905063 + (TTC)n Simple_repeat Simple_repeat 2 155 0 3 1673 514 16 0 0 chr3 142694722 142694783 -16905000 - B1_Mus2 SINE Alu -13 134 74 3 1673 412 353 99 31 chr3 142695305 142695775 -16904008 - L2a LINE L2 -40 3386 2882 3 1673 222 317 54 40 chr3 142695924 142696072 -16903711 - L2a LINE L2 -784 2635 2486 3 1673 749 279 72 48 chr3 142696800 142696910 -16902873 + RLTR15 LTR ERVK 1 114 -245 3 1673 279 0 0 0 chr3 142696910 142696941 -16902842 + (CA)n Simple_repeat Simple_repeat 2 32 0 3 1673 564 62 0 0 chr3 142696941 142697021 -16902762 + (GA)n Simple_repeat Simple_repeat 2 82 0 3 1673 749 279 72 48 chr3 142697021 142697244 -16902539 + RLTR15 LTR ERVK 115 342 -17 3 1673 540 353 133 21 chr3 142698230 142698612 -16901171 + LFSINE_Vert SINE SINE 6 430 -29 3 1673 781 116 274 0 chr3 142699307 142699453 -16900330 - URR1B DNA MER1_type -37 188 3 3 1673 645 306 26 16 chr3 142699553 142699742 -16900041 - ID_B1 SINE B4 -12 212 22 3 1673 837 201 57 74 chr3 142700639 142700753 -16899030 + RMER17C LTR ERVK 120 234 -176 3 1673 546 57 0 0 chr3 142700753 142700823 -16898960 + (TC)n Simple_repeat Simple_repeat 1 70 0 3 1673 837 201 57 74 chr3 142700823 142701004 -16898779 + RMER17C LTR ERVK 235 410 0 3 1673 203 0 37 0 chr3 142701174 142701201 -16898582 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 3 1673 253 327 89 45 chr3 142702298 142702455 -16897328 - Charlie4z DNA MER1_type -1 166 3 3 1673 478 43 29 0 chr3 142702614 142702683 -16897100 + (TC)n Simple_repeat Simple_repeat 2 72 0 3 1673 827 182 25 6 chr3 142702699 142702859 -16896924 + MER5B DNA MER1_type 8 170 -8 3 1673 21 0 0 0 chr3 142704061 142704082 -16895701 + AT_rich Low_complexity Low_complexity 1 21 0 3 1673 775 269 102 40 chr3 142704880 142705245 -16894538 + MLT1B LTR MaLR 4 390 0 3 1673 22 0 0 0 chr3 142706445 142706467 -16893316 + AT_rich Low_complexity Low_complexity 1 22 0 3 1673 23 33 0 0 chr3 142706544 142706574 -16893209 + AT_rich Low_complexity Low_complexity 1 30 0 3 1673 1204 102 11 0 chr3 142706934 142707110 -16892673 + URR1A DNA MER1_type 49 226 0 3 1673 21 57 0 0 chr3 142707290 142707325 -16892458 + AT_rich Low_complexity Low_complexity 1 35 0 3 1673 1139 225 221 0 chr3 142708452 142708750 -16891033 - ORR1D2 LTR MaLR -6 364 1 3 1673 707 216 180 0 chr3 142708769 142708936 -16890847 - B3 SINE B2 -5 211 15 3 1673 564 209 0 9 chr3 142709731 142709837 -16889946 - B4A SINE B4 -2 290 186 3 1673 25 31 0 0 chr3 142709926 142709958 -16889825 + AT_rich Low_complexity Low_complexity 1 32 0 3 1673 362 227 72 0 chr3 142709981 142710099 -16889684 - RSINE1 SINE B4 -8 157 4 3 1673 32 0 0 0 chr3 142710444 142710476 -16889307 + AT_rich Low_complexity Low_complexity 1 32 0 3 1673 391 316 94 79 chr3 142711772 142712304 -16887479 - L1MC3 LINE L1 -173 7612 7073 3 1673 359 279 32 16 chr3 142712398 142712522 -16887261 + CT-rich Low_complexity Low_complexity 2 127 0 3 1673 699 212 66 0 chr3 142712580 142712717 -16887066 - B3 SINE B2 -4 212 67 3 1673 542 233 58 0 chr3 142712722 142712842 -16886941 - B3 SINE B2 -87 129 3 3 1673 273 57 0 0 chr3 142712842 142712877 -16886906 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 3 1673 441 0 0 0 chr3 142713399 142713448 -16886335 + (CA)n Simple_repeat Simple_repeat 2 50 0 3 1673 516 250 133 0 chr3 142713449 142713569 -16886214 - B3A SINE B2 -57 141 6 3 1673 478 207 103 97 chr3 142713573 142713728 -16886055 - ID_B1 SINE B4 -67 157 2 3 1673 182 364 60 10 chr3 142714165 142714265 -16885518 + L2c LINE L2 2977 3081 -294 3 1673 255 323 146 33 chr3 142714333 142714573 -16885210 + L2c LINE L2 3117 3383 -4 3 1673 266 307 61 9 chr3 142715008 142715123 -16884660 - MLT1B LTR MaLR -215 175 55 3 1673 376 247 0 36 chr3 142715162 142715246 -16884537 + ID2 SINE ID 1 81 -2 3 1673 497 187 21 32 chr3 142715363 142715457 -16884326 - ID_B1 SINE B4 -13 211 119 3 1673 304 249 44 136 chr3 142715557 142715629 -16884154 - B3 SINE B2 0 216 10 3 1673 533 266 77 109 chr3 142715629 142715785 -16883998 - RSINE1 SINE B4 -4 161 11 3 1673 276 284 24 36 chr3 142715795 142715879 -16883904 + MamRep434 DNA TcMar 337 419 -7 3 1673 216 261 0 0 chr3 142717066 142717112 -16882671 + GA-rich Low_complexity Low_complexity 4 49 0 3 1673 1534 158 152 11 chr3 142718473 142719031 -16880752 + RLTR17 LTR ERVK 1 637 -55 3 1673 222 354 115 45 chr3 142719125 142719412 -16880371 + L2c LINE L2 3077 3383 -4 3 1673 425 317 94 79 chr3 142721172 142721402 -16878381 - MER47B DNA MER2_type -146 272 36 3 1673 237 33 0 0 chr3 142721402 142721432 -16878351 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 3 1673 425 317 94 79 chr3 142721432 142721468 -16878315 - MER47B DNA MER2_type -383 35 2 3 1673 306 283 382 19 chr3 142721885 142722096 -16877687 - MER47B DNA MER2_type -19 399 112 3 1673 1567 258 52 22 chr3 142722096 142722595 -16877188 + L1M2 LINE L1 2240 2753 -3390 3 1673 582 221 0 0 chr3 142722596 142722732 -16877051 + (TA)n Simple_repeat Simple_repeat 2 137 0 3 1673 235 269 76 15 chr3 142722732 142722864 -16876919 + L1M2 LINE L1 2786 2925 -3218 3 1673 638 304 81 12 chr3 142722931 142723254 -16876529 + L1M2 LINE L1 3921 4265 -1878 3 1673 3626 30 0 0 chr3 142723442 142723838 -16875945 - MTA_Mm LTR MaLR 0 396 1 3 1673 1782 275 49 76 chr3 142723991 142724885 -16874898 + L1M2 LINE L1 4263 5132 -1011 3 1673 359 295 37 15 chr3 142724890 142725024 -16874759 + B1F SINE Alu 13 149 0 3 1673 585 64 0 0 chr3 142725203 142725281 -16874502 + (CAAAG)n Simple_repeat Simple_repeat 2 79 0 3 1673 798 81 0 0 chr3 142725641 142725752 -16874031 + (GA)n Simple_repeat Simple_repeat 2 112 0 3 1673 185 388 27 54 chr3 142725892 142726039 -16873744 + L2b LINE L2 3228 3370 -5 3 1673 1833 97 0 16 chr3 142726859 142727111 -16872672 + L1Md_F2 LINE L1 6324 6571 -11 3 1673 302 172 0 65 chr3 142727313 142727389 -16872394 + ORR1A3-int LTR MaLR 1910 1963 0 3 1673 2004 125 14 116 chr3 142727389 142727752 -16872031 + ORR1A3 LTR MaLR 1 326 0 3 1673 212 217 33 0 chr3 142727920 142727980 -16871803 + GA-rich Low_complexity Low_complexity 5 66 0 3 1673 346 262 112 94 chr3 142728114 142728274 -16871509 + MTEa LTR MaLR 3 165 -214 3 1673 326 320 93 28 chr3 142728274 142728329 -16871454 + MT2A LTR ERVL 3 231 -302 3 1673 315 369 124 15 chr3 142728380 142728581 -16871202 + MT2A LTR ERVL 311 533 0 3 1673 259 350 133 26 chr3 142728686 142728912 -16870871 + MLT1G1 LTR MaLR 330 579 0 3 1673 23 54 0 0 chr3 142729302 142729339 -16870444 + AT_rich Low_complexity Low_complexity 1 37 0 3 1673 351 0 0 0 chr3 142729531 142729570 -16870213 + (CA)n Simple_repeat Simple_repeat 2 40 0 3 1673 275 0 0 28 chr3 142729655 142729691 -16870092 + (TC)n Simple_repeat Simple_repeat 2 36 0 3 1673 369 0 0 0 chr3 142729691 142729731 -16870052 + (TA)n Simple_repeat Simple_repeat 2 42 0 3 1673 215 152 0 21 chr3 142730414 142730461 -16869322 + (TG)n Simple_repeat Simple_repeat 2 47 0 3 1673 471 331 70 67 chr3 142730463 142730673 -16869110 - B4 SINE B4 -1 291 79 3 1673 2325 118 21 12 chr3 142730673 142731008 -16868775 - Lx3_Mus LINE L1 -9 7000 6663 3 1673 471 331 70 67 chr3 142731008 142731082 -16868701 - B4 SINE B4 -214 78 6 3 1673 846 331 78 99 chr3 142731326 142731942 -16867841 - MER82 DNA MER2_type -1 652 50 3 1673 575 323 60 48 chr3 142732148 142732463 -16867320 - MLT1C LTR MaLR -6 461 143 3 1673 1396 333 33 36 chr3 142732488 142733055 -16866728 + MLT2B3 LTR ERVL 6 558 -4 3 1673 340 273 17 76 chr3 142733061 142733180 -16866603 - MLT1C LTR MaLR -352 115 4 3 1673 429 332 94 42 chr3 142733361 142733767 -16866016 - L1MC LINE L1 -1841 4305 3879 3 1673 665 254 30 60 chr3 142734113 142734314 -16865469 - MTEb LTR MaLR -18 361 167 3 1673 459 317 76 0 chr3 142734351 142734385 -16865398 - RSINE1 SINE B4 -8 157 124 3 1673 347 105 0 17 chr3 142734385 142734443 -16865340 + (TG)n Simple_repeat Simple_repeat 2 58 0 3 1673 459 317 76 0 chr3 142734443 142734553 -16865230 - RSINE1 SINE B4 -42 123 3 3 1673 310 340 42 36 chr3 142734553 142734584 -16865199 - MT2A LTR ERVL -367 166 12 3 1673 658 193 0 32 chr3 142734584 142734707 -16865076 - MTEb LTR MaLR -249 130 12 3 1673 654 344 41 38 chr3 142735649 142735939 -16863844 - B4A SINE B4 0 292 2 3 1673 938 213 96 0 chr3 142737165 142737353 -16862430 + B3 SINE B2 1 206 -10 3 1674 4652 177 89 21 chr3 142737839 142738730 -16861053 + RMER17B LTR ERVK 3 953 -5 4 1674 583 244 992 53 chr3 142738748 142738828 -16860955 - MTE2b LTR MaLR -164 215 191 4 1674 504 45 0 0 chr3 142738828 142738895 -16860888 + (CA)n Simple_repeat Simple_repeat 2 68 0 4 1674 441 0 0 0 chr3 142738895 142738943 -16860840 + (GA)n Simple_repeat Simple_repeat 2 50 0 4 1674 583 252 54 162 chr3 142738943 142739162 -16860621 - MTE2b LTR MaLR -189 190 2 4 1674 658 257 70 157 chr3 142739894 142740296 -16859487 + MTEb LTR MaLR 11 377 -2 4 1674 230 273 0 43 chr3 142740522 142740591 -16859192 + CYRA11_Mm Unknown Y-chromosome 367 432 -185 4 1674 314 272 213 60 chr3 142740628 142740961 -16858822 + MLT1A1 LTR MaLR 1 384 -24 4 1674 5237 49 7 2 chr3 142742140 142742748 -16857035 + L1Md_F2 LINE L1 5969 6579 -3 4 1674 371 362 92 57 chr3 142743900 142744497 -16855286 - L2 LINE L2 -520 2899 2282 4 1674 759 240 60 145 chr3 142744536 142744950 -16854833 + RLTR12B LTR ERVK 11 389 -139 4 1674 180 273 114 0 chr3 142744974 142745018 -16854765 + L2 LINE L2 67 115 -3304 4 1674 1382 229 84 99 chr3 142745614 142745997 -16853786 + MTE2a LTR MaLR 3 379 0 4 1674 24 0 0 0 chr3 142746100 142746124 -16853659 + AT_rich Low_complexity Low_complexity 1 24 0 4 1674 333 209 60 0 chr3 142746391 142746458 -16853325 - RSINE1 SINE B4 -31 134 64 4 1674 182 257 23 149 chr3 142748581 142748668 -16851115 + L3 LINE CR1 884 959 -3530 4 1674 191 146 24 0 chr3 142748765 142748806 -16850977 + (TA)n Simple_repeat Simple_repeat 2 43 0 4 1674 283 266 25 131 chr3 142749203 142749363 -16850420 - MLT1B LTR MaLR -17 373 231 4 1674 404 269 39 82 chr3 142749596 142749778 -16850005 - B3A SINE B2 -1 197 24 4 1674 806 294 73 20 chr3 142749837 142750195 -16849588 - Charlie4a DNA MER1_type -31 477 101 4 1674 289 154 0 0 chr3 142750291 142750343 -16849440 - Lx8 LINE L1 -2 7471 7420 4 1674 22 35 0 0 chr3 142750451 142750480 -16849303 + AT_rich Low_complexity Low_complexity 1 29 0 4 1674 2428 73 6 37 chr3 142751408 142751735 -16848048 + L1_Mus3 LINE L1 6315 6631 -7 4 1674 429 312 63 13 chr3 142752245 142752404 -16847379 - B3 SINE B2 -2 214 48 4 1674 261 346 54 23 chr3 142752832 142752962 -16846821 + MIR SINE MIR 118 258 -10 4 1674 557 269 161 137 chr3 142753913 142754373 -16845410 + LTR86C LTR ERVL 45 515 -106 4 1674 412 275 24 32 chr3 142754567 142754691 -16845092 - PB1 SINE Alu 0 127 5 4 1674 502 251 110 35 chr3 142756434 142756607 -16843176 - MIRc SINE MIR -23 245 60 4 1674 714 227 81 34 chr3 142757404 142757602 -16842181 - B3 SINE B2 -9 186 1 4 1674 1053 280 32 134 chr3 142757739 142758148 -16841635 - MTE2b LTR MaLR -1 378 12 4 1674 564 15 0 0 chr3 142758875 142758940 -16840843 + (CA)n Simple_repeat Simple_repeat 1 65 0 4 1674 1070 272 68 48 chr3 142759540 142759892 -16839891 + ORR1E LTR MaLR 1 359 0 4 1674 3951 67 0 0 chr3 142760139 142760604 -16839179 + L1_Mus1 LINE L1 6102 6566 -1 4 1674 22 0 0 0 chr3 142763569 142763591 -16836192 + AT_rich Low_complexity Low_complexity 1 22 0 4 1674 287 49 0 24 chr3 142763879 142763921 -16835862 + (CGGG)n Simple_repeat Simple_repeat 3 43 0 4 1674 25 0 0 0 chr3 142764255 142764280 -16835503 + AT_rich Low_complexity Low_complexity 1 25 0 4 1674 433 335 0 13 chr3 142765760 142765917 -16833866 - MIR3 SINE MIR 0 208 54 4 1674 24 32 0 0 chr3 142766228 142766259 -16833524 + AT_rich Low_complexity Low_complexity 1 31 0 4 1674 324 0 0 0 chr3 142768119 142768155 -16831628 + (TG)n Simple_repeat Simple_repeat 1 36 0 4 1674 1828 172 45 26 chr3 142768684 142769036 -16830747 - RLTR15 LTR ERVK 0 359 1 4 1674 623 265 0 0 chr3 142769743 142769890 -16829893 + B1F SINE Alu 1 147 -2 4 1674 203 224 0 29 chr3 142770511 142770580 -16829203 + T-rich Low_complexity Low_complexity 2 68 0 4 1674 609 328 79 54 chr3 142770585 142770862 -16828921 + B4 SINE B4 5 288 -4 4 1674 546 309 11 17 chr3 142773869 142774050 -16825733 - RMER15 LTR ERVL -96 479 300 4 1674 378 309 134 106 chr3 142775578 142775853 -16823930 - B4 SINE B4 0 292 10 4 1674 285 232 137 55 chr3 142776787 142776860 -16822923 + B1_Mur1 SINE Alu 70 148 -1 4 1674 255 344 76 25 chr3 142777008 142777205 -16822578 + L1MDa LINE L1 269 475 -6158 4 1674 241 312 25 51 chr3 142777339 142777535 -16822248 + L1MDa LINE L1 1013 1203 -5430 4 1674 2531 204 34 15 chr3 142777672 142778201 -16821582 - Lx5 LINE L1 -238 6812 6274 4 1674 731 185 99 10 chr3 142778199 142778401 -16821382 + Lx5 LINE L1 6828 7047 -3 4 1674 311 252 47 37 chr3 142778516 142778623 -16821160 + L1MDa LINE L1 1588 1695 -4938 4 1674 463 302 257 4 chr3 142778817 142779066 -16820717 - MTE2a LTR MaLR -67 312 1 4 1674 180 111 0 0 chr3 142779555 142779582 -16820201 + (TG)n Simple_repeat Simple_repeat 1 27 0 4 1674 611 271 50 0 chr3 142779585 142779725 -16820058 - RSINE1 SINE B4 -17 148 2 4 1674 1373 224 130 16 chr3 142781319 142781695 -16818088 - MTD LTR MaLR 0 419 1 4 1674 639 297 97 0 chr3 142782281 142782466 -16817317 + ID_B1 SINE B4 1 203 -21 4 1674 283 195 24 12 chr3 142782466 142782549 -16817234 + GA-rich Low_complexity Low_complexity 2 85 0 4 1674 661 171 87 47 chr3 142782981 142783153 -16816630 - B2_Mm2 SINE B2 -15 180 2 4 1674 717 296 61 35 chr3 142783712 142784136 -16815647 + Lx8 LINE L1 6809 7243 -230 4 1674 282 224 40 0 chr3 142785307 142785383 -16814400 - L1MB7 LINE L1 -160 6024 5946 4 1674 21 36 0 0 chr3 142786223 142786251 -16813532 + AT_rich Low_complexity Low_complexity 1 28 0 4 1674 207 286 0 0 chr3 142786659 142786708 -16813075 - MIRb SINE MIR -7 261 213 4 1674 610 273 102 25 chr3 142786819 142787089 -16812694 - MLT1D LTR MaLR 0 505 221 4 1674 191 170 0 21 chr3 142787542 142787590 -16812193 + (CATATA)n Simple_repeat Simple_repeat 2 48 0 4 1674 267 365 65 8 chr3 142787629 142787891 -16811892 - L1MB3 LINE L1 -56 6363 6087 4 1674 1140 295 52 41 chr3 142787959 142788376 -16811407 + MTD LTR MaLR 1 395 -24 4 1674 1007 284 130 68 chr3 142788378 142789824 -16809959 - L1MB3 LINE L1 -393 6026 4519 4 1674 449 308 87 16 chr3 142789824 142790009 -16809774 - B3A SINE B2 0 198 1 4 1674 1007 281 154 88 chr3 142790009 142790952 -16808831 - L1MB3 LINE L1 -1858 4518 3485 4 1674 439 347 24 0 chr3 142790979 142791146 -16808637 - L1MB3 LINE L1 -5974 410 240 4 1674 218 321 153 0 chr3 142791257 142791330 -16808453 - MIRb SINE MIR -77 191 110 4 1674 801 0 0 0 chr3 142791330 142791419 -16808364 + (GAA)n Simple_repeat Simple_repeat 1 89 0 4 1674 218 314 92 46 chr3 142791419 142791508 -16808275 - MIRb SINE MIR -159 109 15 4 1674 1574 124 183 33 chr3 142791560 142791894 -16807889 - ORR1C2 LTR MaLR 0 384 1 4 1674 305 298 145 28 chr3 142791990 142792135 -16807648 - HAL1-3A_ME LINE L1 -413 2445 2284 4 1674 2204 114 37 39 chr3 142792142 142792552 -16807231 - Lx LINE L1 -20 6634 6226 4 1674 189 269 0 0 chr3 142792578 142792645 -16807138 + CT-rich Low_complexity Low_complexity 2 68 0 4 1674 523 333 45 15 chr3 142792784 142792982 -16806801 - B4A SINE B4 -68 224 21 4 1674 15419 15 0 0 chr3 142793329 142795907 -16803876 - L1Md_T LINE L1 0 6582 4005 4 1674 447 19 0 0 chr3 142796051 142796103 -16803680 + (TC)n Simple_repeat Simple_repeat 2 53 0 4 1674 285 29 0 0 chr3 142796103 142796136 -16803647 + (TG)n Simple_repeat Simple_repeat 1 34 0 4 1674 24 32 0 0 chr3 142797274 142797305 -16802478 + AT_rich Low_complexity Low_complexity 1 31 0 4 1674 441 0 0 0 chr3 142798164 142798213 -16801570 + (TA)n Simple_repeat Simple_repeat 2 50 0 4 1674 504 100 0 0 chr3 142798422 142798502 -16801281 + (TG)n Simple_repeat Simple_repeat 1 80 0 4 1674 1060 363 57 2 chr3 142799031 142799467 -16800316 - MLT1F LTR MaLR -19 529 70 4 1674 661 267 80 142 chr3 142799546 142799947 -16799836 - MT2A LTR ERVL -77 456 81 4 1674 225 331 42 112 chr3 142799872 142800015 -16799768 - MTE2a LTR MaLR -227 152 20 4 1674 238 343 43 82 chr3 142800033 142800175 -16799608 - MLT1F-int LTR MaLR -197 1212 1077 4 1674 533 15 15 0 chr3 142800175 142800241 -16799542 + (TG)n Simple_repeat Simple_repeat 2 68 0 4 1674 238 343 43 82 chr3 142800241 142800282 -16799501 - MLT1F-int LTR MaLR -333 1076 1036 4 1674 207 0 0 0 chr3 142800393 142800416 -16799367 + (GA)n Simple_repeat Simple_repeat 2 24 0 4 1674 1610 201 44 32 chr3 142801057 142801467 -16798316 - RCHARR1 DNA MER1_type -45 929 515 4 1674 367 254 54 54 chr3 142801490 142801619 -16798164 - RSINE1 SINE B4 -35 130 2 4 1674 724 207 65 0 chr3 142801630 142801799 -16797984 - RCHARR1 DNA MER1_type -453 521 342 4 1674 755 292 45 5 chr3 142801852 142802072 -16797711 - RCHARR1 DNA MER1_type -740 234 6 4 1674 764 348 78 43 chr3 142802667 142803153 -16796630 + MLT1F-int LTR MaLR 469 971 -518 4 1674 221 57 0 28 chr3 142803610 142803646 -16796137 + (GGGTG)n Simple_repeat Simple_repeat 1 35 0 4 1674 459 0 0 0 chr3 142803847 142803898 -16795885 + (CA)n Simple_repeat Simple_repeat 2 52 0 4 1674 688 300 40 18 chr3 142804056 142804328 -16795455 - B4 SINE B4 -14 278 1 4 1674 366 352 61 53 chr3 142804497 142804725 -16795058 - MIRb SINE MIR -14 254 25 4 1674 430 333 20 13 chr3 142806034 142806183 -16793600 + MIRb SINE MIR 63 212 -56 4 1674 488 297 52 73 chr3 142807954 142808266 -16791517 + B4 SINE B4 1 288 -4 4 1674 203 295 49 0 chr3 142808693 142808754 -16791029 + MIRm SINE MIR 76 139 -137 4 1674 225 333 90 111 chr3 142808765 142808954 -16790829 + MER106A DNA MER1_type 24 208 -28 4 1674 665 292 38 5 chr3 142809119 142809329 -16790454 + MLT1A0-int LTR MaLR 1514 1730 -5 4 1674 953 254 84 22 chr3 142809342 142809616 -16790167 + MLT1A0 LTR MaLR 15 305 -60 4 1674 225 196 0 19 chr3 142810185 142810237 -16789546 + A-rich Low_complexity Low_complexity 1 51 0 4 1674 204 40 0 0 chr3 142811053 142811078 -16788705 + (TA)n Simple_repeat Simple_repeat 2 26 0 4 1674 726 342 15 49 chr3 142811365 142811662 -16788121 + B4A SINE B4 1 292 0 4 1674 193 333 0 0 chr3 142812064 142812115 -16787668 - MIRm SINE MIR -152 124 74 4 1674 276 30 0 0 chr3 142812411 142812444 -16787339 + (TG)n Simple_repeat Simple_repeat 1 33 0 4 1674 420 20 0 0 chr3 142812444 142812492 -16787291 + (GA)n Simple_repeat Simple_repeat 1 49 0 4 1674 304 267 0 74 chr3 142812493 142812574 -16787209 - PB1D10 SINE Alu -22 95 21 4 1674 437 213 0 9 chr3 142814274 142814383 -16785400 + CT-rich Low_complexity Low_complexity 1 108 0 4 1674 1198 141 0 5 chr3 142814465 142814651 -16785132 - B2_Mm2 SINE B2 -9 186 2 5 1674 1018 259 86 49 chr3 142814887 142815359 -16784424 + RMER4B LTR ERVK 11 545 -40 5 1674 24 32 0 0 chr3 142815714 142815745 -16784038 + AT_rich Low_complexity Low_complexity 1 31 0 5 1674 402 21 0 0 chr3 142816244 142816291 -16783492 + (CA)n Simple_repeat Simple_repeat 2 48 0 5 1674 230 367 35 35 chr3 142816482 142816626 -16783157 + L2a LINE L2 2368 2511 -908 5 1674 182 276 252 19 chr3 142816976 142817083 -16782700 + L2a LINE L2 3072 3203 -223 5 1674 261 119 0 0 chr3 142817324 142817366 -16782417 + (TG)n Simple_repeat Simple_repeat 1 42 0 5 1674 486 0 0 0 chr3 142817366 142817419 -16782364 + (GA)n Simple_repeat Simple_repeat 1 54 0 5 1674 928 308 133 74 chr3 142818351 142818908 -16780875 + MLT2B3 LTR ERVL 123 708 -9 5 1674 204 40 0 0 chr3 142819007 142819032 -16780751 + (TG)n Simple_repeat Simple_repeat 2 26 0 5 1674 771 206 7 0 chr3 142819061 142819216 -16780567 + Lx8 LINE L1 6987 7142 -331 5 1674 405 0 0 0 chr3 142819219 142819264 -16780519 + (TG)n Simple_repeat Simple_repeat 1 45 0 5 1674 520 209 8 68 chr3 142819271 142819389 -16780394 + B2_Mm2 SINE B2 30 140 -55 5 1674 402 249 156 84 chr3 142819461 142819481 -16780302 + Lx8 LINE L1 7194 7213 -260 5 1674 672 13 0 0 chr3 142819481 142819558 -16780225 + (GGGA)n Simple_repeat Simple_repeat 3 79 0 5 1674 402 249 156 84 chr3 142819558 142819787 -16779996 + Lx8 LINE L1 7214 7460 -13 5 1674 278 122 0 0 chr3 142819793 142819842 -16779941 - B3 SINE B2 -1 215 167 5 1674 834 262 56 103 chr3 142819842 142820182 -16779601 - RLTR18 LTR ERVK 0 616 293 5 1674 606 246 63 63 chr3 142820327 142820431 -16779352 - RLTR18 LTR ERVK -313 199 98 5 1674 883 106 7 7 chr3 142820431 142820574 -16779209 + (TTTCC)n Simple_repeat Simple_repeat 3 145 0 5 1674 606 246 63 63 chr3 142820574 142820660 -16779123 - RLTR18 LTR ERVK -415 97 9 5 1674 637 261 15 7 chr3 142820655 142820790 -16778993 - B3 SINE B2 -32 184 49 5 1674 240 35 0 0 chr3 142820852 142820881 -16778902 + (A)n Simple_repeat Simple_repeat 1 29 0 5 1674 218 32 32 0 chr3 142821021 142821052 -16778731 + (TTTG)n Simple_repeat Simple_repeat 3 34 0 5 1674 426 317 61 17 chr3 142821617 142821848 -16777935 + ERVL-B4-int LTR ERVL 1386 1626 -4041 5 1674 479 302 73 22 chr3 142821925 142822256 -16777527 + ERVL-B4-int LTR ERVL 1808 2167 -3318 5 1674 524 326 7 7 chr3 142822279 142822424 -16777359 + RSINE1 SINE B4 8 152 -13 5 1674 512 15 0 15 chr3 142822426 142822492 -16777291 + (CA)n Simple_repeat Simple_repeat 1 65 0 5 1674 279 54 0 0 chr3 142823432 142823469 -16776314 + (CA)n Simple_repeat Simple_repeat 2 38 0 5 1674 180 0 0 0 chr3 142823516 142823536 -16776247 + (T)n Simple_repeat Simple_repeat 1 20 0 5 1674 221 0 35 0 chr3 142824347 142824376 -16775407 + (CAAA)n Simple_repeat Simple_repeat 3 32 0 5 1674 767 189 7 33 chr3 142827404 142827557 -16772226 - B1_Mur2 SINE Alu 0 149 1 5 1674 7061 137 7 77 chr3 142828262 142830233 -16769550 - L1_Mus4 LINE L1 -3 6633 4916 5 1674 4651 36 0 2 chr3 142830233 142830785 -16768998 + L1Md_F2 LINE L1 6020 6570 -12 5 1674 6612 169 15 161 chr3 142830785 142831489 -16768294 - L1_Mus4 LINE L1 -962 4915 4235 5 1674 1031 123 0 0 chr3 142831490 142831660 -16768123 - L1_Mur1 LINE L1 -1503 4383 4214 5 1674 849 99 0 0 chr3 142831650 142831781 -16768002 - MusHAL1 LINE L1 -1224 1488 1358 5 1674 358 356 44 6 chr3 142831778 142831959 -16767824 + Lx8 LINE L1 7140 7327 -146 5 1674 996 156 0 0 chr3 142831966 142832146 -16767637 + (CA)n Simple_repeat Simple_repeat 1 180 0 5 1674 201 255 0 0 chr3 142832531 142832578 -16767205 + T-rich Low_complexity Low_complexity 2 48 0 5 1674 200 326 58 0 chr3 142834338 142834424 -16765359 - L4 LINE RTE -1363 666 576 5 1674 684 249 54 5 chr3 142834481 142834667 -16765116 - B3A SINE B2 -3 195 1 5 1674 593 254 123 49 chr3 142835967 142836170 -16763613 - ID_B1 SINE B4 0 224 7 5 1674 816 11 0 0 chr3 142836376 142836469 -16763314 + (TTC)n Simple_repeat Simple_repeat 2 94 0 5 1674 21 0 0 0 chr3 142836920 142836941 -16762842 + AT_rich Low_complexity Low_complexity 1 21 0 5 1674 1044 113 37 11 chr3 142837513 142837707 -16762076 - RMER19A LTR ERVK 0 902 589 5 1674 1280 227 37 169 chr3 142837856 142838626 -16761157 - RMER19C LTR ERVK 0 902 1 5 1674 234 320 13 13 chr3 142838764 142838840 -16760943 - ID4 SINE ID -6 77 2 5 1674 22 70 0 0 chr3 142838886 142838929 -16760854 + AT_rich Low_complexity Low_complexity 1 43 0 5 1674 387 363 52 33 chr3 142839060 142839271 -16760512 - MLT1E2 LTR MaLR -171 456 242 5 1674 981 99 19 13 chr3 142839309 142839463 -16760320 - Lx3C LINE L1 -679 6297 6143 5 1674 8129 40 1 2 chr3 142839463 142841170 -16758613 - L1Md_F3 LINE L1 -1 6583 4879 5 1674 2209 110 22 3 chr3 142841169 142841535 -16758248 - Lx3C LINE L1 -821 6155 5783 5 1674 5720 69 3 1 chr3 142841545 142842282 -16757501 - L1_Mus2 LINE L1 0 6566 5829 5 1674 5685 98 50 23 chr3 142842282 142842844 -16756939 + L1_Mm LINE L1 4637 5234 -649 5 1674 420 122 0 0 chr3 142842844 142842926 -16756857 + (TCTA)n Simple_repeat Simple_repeat 4 85 0 5 1674 5685 98 50 23 chr3 142842926 142843294 -16756489 + L1_Mm LINE L1 5235 5591 -292 5 1674 3500 102 8 10 chr3 142843289 142843812 -16755971 - Lx3C LINE L1 -84 5802 5281 5 1674 3819 128 42 12 chr3 142843816 142844459 -16755324 + Lx3C LINE L1 6313 6974 -2 5 1674 288 91 0 0 chr3 142844472 142844516 -16755267 + (CAA)n Simple_repeat Simple_repeat 2 45 0 5 1674 361 265 64 35 chr3 142845897 142846069 -16753714 - L1MEg LINE L1 -5907 177 1 5 1674 34 55 0 0 chr3 142846077 142846132 -16753651 + AT_rich Low_complexity Low_complexity 1 55 0 5 1674 417 307 92 28 chr3 142846144 142846174 -16753609 - RSINE1 SINE B4 -4 161 131 5 1674 261 0 0 0 chr3 142846174 142846203 -16753580 + (TC)n Simple_repeat Simple_repeat 2 30 0 5 1674 243 0 0 0 chr3 142846203 142846229 -16753554 + (TG)n Simple_repeat Simple_repeat 2 28 0 5 1674 417 307 92 28 chr3 142846229 142846338 -16753445 - RSINE1 SINE B4 -35 130 13 5 1674 25 0 0 0 chr3 142846353 142846378 -16753405 + AT_rich Low_complexity Low_complexity 1 25 0 5 1674 306 200 14 28 chr3 142846430 142846502 -16753281 - MT2A LTR ERVL -92 441 371 5 1674 878 192 55 70 chr3 142846502 142846725 -16753058 + MT2B LTR ERVL 316 540 -61 5 1674 264 200 0 0 chr3 142846725 142846780 -16753003 + (CA)n Simple_repeat Simple_repeat 1 55 0 5 1674 304 259 145 47 chr3 142846826 142847081 -16752702 - L1M2 LINE L1 -2122 4021 3742 5 1674 2215 200 32 38 chr3 142847146 142847607 -16752176 - RMER15 LTR ERVL -34 541 1 5 1674 271 286 85 46 chr3 142847625 142848116 -16751667 - L1M2 LINE L1 -2452 3691 3169 5 1674 777 11 0 0 chr3 142848451 142848541 -16751242 + (CA)n Simple_repeat Simple_repeat 2 91 0 5 1674 618 398 49 39 chr3 142849834 142850221 -16749562 - LTR16A LTR ERVL 0 451 61 5 1674 28 0 0 0 chr3 142850671 142850699 -16749084 + AT_rich Low_complexity Low_complexity 1 28 0 5 1674 375 41 0 0 chr3 142850736 142850785 -16748998 + (CA)n Simple_repeat Simple_repeat 2 50 0 5 1674 228 163 0 0 chr3 142850785 142850828 -16748955 + (TG)n Simple_repeat Simple_repeat 1 43 0 5 1674 278 171 33 22 chr3 142851139 142851229 -16748554 + CT-rich Low_complexity Low_complexity 3 93 0 5 1674 1440 57 0 0 chr3 142851594 142851895 -16747888 + (CA)n Simple_repeat Simple_repeat 1 301 0 5 1674 219 377 76 23 chr3 142852477 142852648 -16747135 + MIR3 SINE MIR 5 184 -24 5 1674 370 233 192 102 chr3 142852891 142853068 -16746715 + B3 SINE B2 1 209 -7 5 1674 200 0 0 91 chr3 142855402 142855420 -16744363 + (CAAAA)n Simple_repeat Simple_repeat 2 19 0 5 1674 441 0 0 0 chr3 142855420 142855469 -16744314 + (CCA)n Simple_repeat Simple_repeat 1 49 0 5 1674 200 0 0 91 chr3 142855469 142855494 -16744289 + (CAAAA)n Simple_repeat Simple_repeat 5 26 0 5 1674 1035 272 130 11 chr3 142857279 142857640 -16742143 - MTD LTR MaLR -14 405 2 5 1674 234 356 75 15 chr3 142857763 142857897 -16741886 + MIRb SINE MIR 53 194 -74 5 1674 182 256 0 152 chr3 142858092 142858184 -16741599 - MIRc SINE MIR -101 167 90 5 1674 186 163 21 104 chr3 142858199 142858247 -16741536 + MIR SINE MIR 31 74 -188 5 1674 28 0 0 0 chr3 142858445 142858473 -16741310 + AT_rich Low_complexity Low_complexity 1 28 0 5 1674 26 64 0 0 chr3 142859627 142859674 -16740109 + AT_rich Low_complexity Low_complexity 1 47 0 5 1674 930 244 14 5 chr3 142859674 142859884 -16739899 - B3 SINE B2 -2 214 3 5 1674 588 275 68 24 chr3 142860481 142860686 -16739097 - B3 SINE B2 -2 214 1 5 1674 432 0 0 0 chr3 142861956 142862004 -16737779 + (TTTA)n Simple_repeat Simple_repeat 3 50 0 5 1674 24 32 0 0 chr3 142862970 142863001 -16736782 + AT_rich Low_complexity Low_complexity 1 31 0 5 1674 893 264 13 112 chr3 142863355 142863747 -16736036 - Lx6 LINE L1 0 7460 7108 5 1674 774 143 27 20 chr3 142863776 142863926 -16735857 - L1_Mur3 LINE L1 -1389 4491 4341 5 1674 611 186 162 14 chr3 142863926 142864004 -16735779 - RLTR20C LTR ERVK 0 578 502 5 1674 423 0 0 0 chr3 142864004 142864051 -16735732 + (CA)n Simple_repeat Simple_repeat 1 47 0 5 1674 1136 229 71 60 chr3 142864051 142864416 -16735367 - RLTR20C LTR ERVK -77 501 1 5 1674 2499 144 14 104 chr3 142864418 142864609 -16735174 - L1_Mur3 LINE L1 -1536 4344 4172 5 1674 3874 122 51 3 chr3 142864609 142865215 -16734568 + Lx2A1 LINE L1 6374 7008 0 5 1674 2499 144 14 104 chr3 142865215 142865598 -16734185 - L1_Mur3 LINE L1 -1709 4171 3822 5 1674 647 330 11 16 chr3 142865772 142865954 -16733829 - ID_B1 SINE B4 -7 217 37 5 1674 228 310 96 17 chr3 142866821 142866936 -16732847 - LTR90B LTR LTR -509 287 164 5 1675 8681 68 14 21 chr3 142868679 142869869 -16729914 - Lx3_Mus LINE L1 -1 7008 5827 5 1675 528 291 0 43 chr3 142869900 142870040 -16729743 - MTEa LTR MaLR -244 135 2 5 1675 1830 143 3 14 chr3 142870240 142870537 -16729246 + ORR1A3 LTR MaLR 1 294 -32 5 1675 555 302 109 32 chr3 142870555 142870931 -16728852 + L1M3 LINE L1 5377 5781 -399 5 1675 215 378 14 0 chr3 142871206 142871280 -16728503 - L2c LINE L2 -47 3340 3266 5 1675 405 0 0 0 chr3 142871671 142871716 -16728067 + (CA)n Simple_repeat Simple_repeat 1 45 0 5 1675 1098 278 141 16 chr3 142872180 142872692 -16727091 - Lx8 LINE L1 -17 7456 6881 5 1675 8639 44 1 1 chr3 142873347 142874451 -16725332 + L1Md_F3 LINE L1 4483 5586 -297 5 1675 7730 52 12 0 chr3 142874451 142875423 -16724360 + L1Md_F3 LINE L1 5587 6570 -14 5 1675 390 299 130 62 chr3 142875439 142875731 -16724052 + MLT2C1 LTR ERVL 36 347 -50 5 1675 757 263 67 77 chr3 142875733 142875896 -16723887 + B3A SINE B2 1 157 -38 5 1675 441 0 0 0 chr3 142875896 142875945 -16723838 + (CA)n Simple_repeat Simple_repeat 1 49 0 6 1675 473 263 67 77 chr3 142875945 142875975 -16723808 + B2_Mm2 SINE B2 158 191 -4 5 1675 610 298 49 38 chr3 142875978 142876163 -16723620 + B3A SINE B2 2 188 -10 6 1675 441 54 0 0 chr3 142876335 142876391 -16723392 + (TA)n Simple_repeat Simple_repeat 1 56 0 6 1675 290 281 99 18 chr3 142877701 142877832 -16721951 + MIRb SINE MIR 29 171 -105 6 1675 190 284 102 80 chr3 142878307 142878395 -16721388 - MIRb SINE MIR -62 206 117 6 1675 345 290 24 16 chr3 142878846 142878972 -16720811 + PB1 SINE Alu 1 127 0 6 1675 16002 22 0 0 chr3 142879066 142881699 -16718084 - L1Md_T LINE L1 -1 6581 3949 6 1675 369 369 17 11 chr3 142882312 142882493 -16717290 - HAL1-2a_MD LINE L1 -498 2526 2345 6 1675 1503 267 91 9 chr3 142883885 142884316 -16715467 + RCHARR1 DNA MER1_type 11 476 -498 6 1675 1133 141 25 25 chr3 142884309 142884506 -16715277 + URR1B DNA MER1_type 29 225 0 6 1675 856 244 13 26 chr3 142884510 142884737 -16715046 + RCHARR1 DNA MER1_type 748 971 -3 6 1675 405 0 0 0 chr3 142888250 142888295 -16711488 + (TG)n Simple_repeat Simple_repeat 2 46 0 6 1675 23 0 0 0 chr3 142888440 142888463 -16711320 + AT_rich Low_complexity Low_complexity 1 23 0 6 1675 660 222 0 0 chr3 142888721 142888901 -16710882 + (TG)n Simple_repeat Simple_repeat 1 180 0 6 1675 21 57 0 0 chr3 142889646 142889681 -16710102 + AT_rich Low_complexity Low_complexity 1 35 0 6 1675 539 296 21 0 chr3 142889976 142890118 -16709665 - B1_Mur1 SINE Alu 0 149 5 6 1675 321 281 54 84 chr3 142890117 142890140 -16709643 - MT2B2 LTR ERVL -253 331 170 6 1675 643 244 14 62 chr3 142890140 142890284 -16709499 - B1_Mus1 SINE Alu -6 142 6 6 1675 286 289 96 108 chr3 142890749 142890916 -16708867 + MIRb SINE MIR 104 268 0 6 1675 366 80 0 0 chr3 142891844 142891894 -16707889 + (TG)n Simple_repeat Simple_repeat 2 51 0 6 1675 332 222 57 115 chr3 142893537 142893756 -16706027 - MLT1C LTR MaLR -46 421 152 6 1675 228 319 14 0 chr3 142893831 142893903 -16705880 + MLT1C LTR MaLR 67 139 -328 6 1675 14260 21 0 0 chr3 142894090 142896498 -16703285 - L1Md_T LINE L1 -2 6580 4173 6 1675 2134 253 46 13 chr3 142896498 142897038 -16702745 - RCHARR1 DNA MER1_type -254 720 163 6 1675 328 301 141 31 chr3 142897959 142898151 -16701632 + L2a LINE L2 3150 3362 -64 6 1675 267 203 0 0 chr3 142898198 142898257 -16701526 + (TATG)n Simple_repeat Simple_repeat 4 62 0 6 1675 182 395 0 13 chr3 142898278 142898355 -16701428 + L2a LINE L2 3350 3425 -1 6 1675 684 303 124 8 chr3 142899656 142899922 -16699861 + Tigger7 DNA MER2_type 2 298 -2193 6 1675 280 336 27 22 chr3 142899971 142900176 -16699607 - B4A SINE B4 -8 284 12 6 1675 343 375 57 16 chr3 142900401 142900523 -16699260 - MLT1M LTR MaLR -489 183 57 6 1675 366 23 0 0 chr3 142901204 142901247 -16698536 + (TGAA)n Simple_repeat Simple_repeat 1 43 0 6 1675 297 323 53 23 chr3 142901758 142901891 -16697892 - MLT1L LTR MaLR -342 268 132 6 1675 872 108 0 7 chr3 142902095 142902235 -16697548 + (TTCC)n Simple_repeat Simple_repeat 4 142 0 6 1675 679 276 24 5 chr3 142902240 142902451 -16697332 - B3 SINE B2 0 216 2 6 1675 1176 124 118 10 chr3 142902788 142902992 -16696791 + URR1A DNA MER1_type 1 226 0 6 1675 220 264 16 0 chr3 142906103 142906228 -16693555 + CT-rich Low_complexity Low_complexity 2 128 0 6 1675 495 0 0 0 chr3 142907109 142907164 -16692619 + (TC)n Simple_repeat Simple_repeat 2 56 0 6 1675 354 45 0 0 chr3 142907164 142907207 -16692576 + (TG)n Simple_repeat Simple_repeat 1 44 0 6 1675 529 315 119 21 chr3 142907208 142907451 -16692332 - B4A SINE B4 -23 269 3 6 1675 313 345 60 8 chr3 142907919 142908036 -16691747 - Charlie5 DNA MER1_type -2501 123 1 6 1675 288 346 40 62 chr3 142908220 142908445 -16691338 + MIRb SINE MIR 49 268 0 6 1675 1057 283 31 62 chr3 142908514 142908906 -16690877 - MTE2a LTR MaLR -3 416 18 6 1675 347 105 0 17 chr3 142910502 142910560 -16689223 + (TTTA)n Simple_repeat Simple_repeat 4 60 0 6 1675 663 175 6 13 chr3 142911039 142911195 -16688588 + CT-rich Low_complexity Low_complexity 2 156 0 6 1675 1053 119 0 0 chr3 142911698 142911912 -16687871 + (TG)n Simple_repeat Simple_repeat 1 214 0 6 1675 580 170 0 0 chr3 142911989 142912083 -16687700 + B3A SINE B2 1 94 -104 6 1675 25 51 0 33 chr3 142912168 142912203 -16687580 + AT_rich Low_complexity Low_complexity 1 35 0 6 1675 259 247 26 13 chr3 142912203 142912281 -16687502 + ID4 SINE ID 1 79 -4 6 1675 25 51 0 33 chr3 142912281 142912306 -16687477 + AT_rich Low_complexity Low_complexity 1 24 0 6 1675 444 145 0 38 chr3 142913722 142913801 -16685982 + B4 SINE B4 186 261 -31 6 1675 441 36 0 0 chr3 142913810 142913865 -16685918 + (CA)n Simple_repeat Simple_repeat 1 55 0 6 1675 312 175 0 0 chr3 142914898 142914961 -16684822 + GA-rich Low_complexity Low_complexity 2 64 0 6 1675 318 314 96 61 chr3 142915290 142915487 -16684296 + MIR SINE MIR 56 259 -3 6 1675 369 58 0 0 chr3 142916343 142916395 -16683388 + (CAAA)n Simple_repeat Simple_repeat 1 52 0 6 1675 1667 214 73 0 chr3 142916595 142916922 -16682861 - ORR1B2 LTR MaLR -14 353 3 6 1675 4311 44 0 2 chr3 142918527 142919047 -16680736 - L1Md_F2 LINE L1 -4 6578 6060 6 1675 552 255 43 7 chr3 142919136 142919274 -16680509 + RSINE1 SINE B4 4 146 -19 6 1675 22 35 0 0 chr3 142919300 142919329 -16680454 + AT_rich Low_complexity Low_complexity 1 29 0 6 1675 1689 329 46 5 chr3 142920370 142920936 -16678847 - Tigger7 DNA MER2_type -1902 589 1 6 1675 292 306 95 7 chr3 142921511 142921659 -16678124 - MIRb SINE MIR -57 211 51 6 1675 352 264 76 63 chr3 142921694 142921852 -16677931 - RSINE1 SINE B4 -2 163 4 6 1675 21 36 0 0 chr3 142922617 142922645 -16677138 + AT_rich Low_complexity Low_complexity 1 28 0 6 1675 23 33 0 0 chr3 142922883 142922913 -16676870 + AT_rich Low_complexity Low_complexity 1 30 0 6 1675 267 287 0 138 chr3 142923181 142923290 -16676493 + B4 SINE B4 2 95 -197 6 1675 3672 231 86 28 chr3 142923293 142924033 -16675750 + Lx9 LINE L1 4518 5266 -581 6 1675 1366 81 16 0 chr3 142924033 142924219 -16675564 + B2_Mm2 SINE B2 2 190 -5 6 1675 3672 231 86 28 chr3 142924219 142924489 -16675294 + Lx9 LINE L1 5267 5586 -261 6 1675 2755 67 3 16 chr3 142924489 142924869 -16674914 + L1Md_F2 LINE L1 6196 6570 -12 6 1675 3672 231 86 28 chr3 142924869 142925025 -16674758 + Lx9 LINE L1 5587 5744 -103 6 1675 256 24 24 24 chr3 142925025 142925067 -16674716 + (CAAA)n Simple_repeat Simple_repeat 2 43 0 6 1675 3672 274 137 20 chr3 142925067 142925234 -16674549 + Lx9 LINE L1 5745 5993 -1651 6 1675 204 339 0 0 chr3 142925361 142925420 -16674363 + (CA)n Simple_repeat Simple_repeat 2 60 0 6 1675 432 342 38 0 chr3 142925723 142925881 -16673902 - MER20 DNA MER1_type -23 196 33 6 1675 494 299 96 129 chr3 142926287 142926547 -16673236 + MER31B LTR ERV1 9 260 -225 6 1675 608 271 48 53 chr3 142926547 142926734 -16673049 + B3A SINE B2 4 189 -9 6 1675 472 294 108 149 chr3 142926734 142926990 -16672793 + MER31B LTR ERV1 261 483 -2 6 1675 187 263 0 0 chr3 142930176 142930214 -16669569 - L3 LINE CR1 -486 4003 3966 6 1675 361 359 19 19 chr3 142930214 142930373 -16669410 - L3 LINE CR1 -776 3713 3555 6 1675 503 284 31 76 chr3 142931256 142931546 -16668237 + B4A SINE B4 2 278 -14 6 1675 285 326 138 50 chr3 142931929 142932110 -16667673 - MIR SINE MIR -34 228 32 6 1675 22 0 0 0 chr3 142932189 142932211 -16667572 + AT_rich Low_complexity Low_complexity 1 22 0 6 1675 2728 245 122 42 chr3 142932215 142933351 -16666432 - Lx9 LINE L1 -6 7638 6412 6 1675 210 71 0 0 chr3 142939329 142939357 -16660426 + (A)n Simple_repeat Simple_repeat 1 28 0 6 1675 411 73 0 0 chr3 142939919 142939974 -16659809 + (TGG)n Simple_repeat Simple_repeat 1 55 0 6 1675 274 205 26 0 chr3 142941205 142941283 -16658500 + CT-rich Low_complexity Low_complexity 3 82 0 6 1675 258 125 0 0 chr3 142942427 142942475 -16657308 + (T)n Simple_repeat Simple_repeat 1 48 0 6 1675 1158 111 0 0 chr3 142942666 142942947 -16656836 + (TC)n Simple_repeat Simple_repeat 1 281 0 6 1675 372 136 20 20 chr3 142943271 142943369 -16656414 + (ATG)n Simple_repeat Simple_repeat 2 99 0 6 1675 274 286 100 0 chr3 142943382 142943452 -16656331 - ID4_ SINE ID -5 78 2 6 1675 223 344 10 41 chr3 142943493 142943590 -16656193 + MIRb SINE MIR 70 163 -105 6 1675 686 245 105 28 chr3 142943674 142943964 -16655819 + ORR1E LTR MaLR 1 350 -9 6 1675 246 290 48 48 chr3 142944071 142944176 -16655607 - MIRb SINE MIR -113 155 51 6 1675 432 234 130 57 chr3 142944678 142944855 -16654928 + ORR1E LTR MaLR 3 192 -167 6 1675 227 280 100 62 chr3 142947484 142947743 -16652040 - L1MA8 LINE L1 -180 6813 6545 6 1675 279 0 0 0 chr3 142947770 142947801 -16651982 + (TG)n Simple_repeat Simple_repeat 1 31 0 6 1675 494 278 9 0 chr3 142947801 142947916 -16651867 - RSINE1 SINE B4 -45 120 5 6 1675 207 173 0 0 chr3 142947925 142947977 -16651806 + T-rich Low_complexity Low_complexity 1 52 0 6 1675 699 259 71 34 chr3 142947987 142948243 -16651540 - L1MA8 LINE L1 -757 6134 5856 6 1675 311 0 0 25 chr3 142948243 142948283 -16651500 + (TTA)n Simple_repeat Simple_repeat 1 39 0 6 1675 699 308 91 34 chr3 142948283 142948411 -16651372 - L1MA8 LINE L1 -987 5855 5723 6 1675 841 86 0 52 chr3 142948411 142948546 -16651237 - L1_Mus1 LINE L1 0 6567 6440 6 1675 699 308 91 34 chr3 142948546 142948985 -16650798 - L1MA8 LINE L1 -1120 5722 5259 6 1675 279 0 0 0 chr3 142949167 142949198 -16650585 + (CA)n Simple_repeat Simple_repeat 2 32 0 6 1675 258 179 51 13 chr3 142949198 142949277 -16650506 + (TA)n Simple_repeat Simple_repeat 1 82 0 6 1675 702 192 0 0 chr3 142949305 142949451 -16650332 + (TA)n Simple_repeat Simple_repeat 1 146 0 6 1675 315 157 0 19 chr3 142949451 142949503 -16650280 + HAL1-3A_ME LINE L1 1975 2025 -833 6 1675 327 287 80 45 chr3 142949505 142949846 -16649937 - L1MA8 LINE L1 -1934 4911 4560 6 1675 412 298 61 0 chr3 142949958 142950089 -16649694 - L1MD LINE L1 -2981 3165 3027 6 1675 211 374 169 0 chr3 142950144 142950227 -16649556 - B1F SINE Alu -52 97 1 6 1675 616 271 104 23 chr3 142950328 142950721 -16649062 - L1MA8 LINE L1 -4149 2700 2276 6 1675 423 0 0 0 chr3 142950865 142950912 -16648871 + (TC)n Simple_repeat Simple_repeat 1 47 0 6 1675 715 259 125 12 chr3 142950928 142951256 -16648527 - L1MA8 LINE L1 -4787 2062 1698 6 1675 207 0 0 0 chr3 142951256 142951279 -16648504 + (T)n Simple_repeat Simple_repeat 1 23 0 6 1675 279 0 0 0 chr3 142951655 142951686 -16648097 + (CA)n Simple_repeat Simple_repeat 2 32 0 6 1675 272 250 192 0 chr3 142953274 142953394 -16646389 - L1M5 LINE L1 -3294 2852 2710 7 1675 242 29 29 0 chr3 142953403 142953438 -16646345 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 7 1675 2218 104 0 12 chr3 142953460 142953790 -16645993 - L1Md_F2 LINE L1 -3 6579 6254 7 1675 1213 268 91 25 chr3 142953795 142954159 -16645624 - MTD LTR MaLR -14 405 18 7 1675 315 340 104 40 chr3 142954983 142955185 -16644598 - MLT1H LTR MaLR -223 326 112 7 1675 22 35 0 0 chr3 142955335 142955364 -16644419 + AT_rich Low_complexity Low_complexity 1 29 0 7 1675 241 143 0 0 chr3 142957008 142957043 -16642740 + MLT1I LTR MaLR 354 388 -23 7 1675 26 50 0 0 chr3 142957097 142957137 -16642646 + AT_rich Low_complexity Low_complexity 1 40 0 7 1675 405 244 184 16 chr3 142958514 142958639 -16641144 + RSINE1 SINE B4 4 149 -16 7 1675 1589 259 55 31 chr3 142958699 142959156 -16640627 + Lx6 LINE L1 6953 7420 -40 7 1675 843 243 44 0 chr3 142960297 142960503 -16639280 - B3 SINE B2 -1 215 1 7 1675 281 343 28 7 chr3 142961408 142961549 -16638234 + L1MEg LINE L1 252 395 -6005 7 1675 397 303 77 84 chr3 142962172 142962291 -16637492 + L1MEg LINE L1 1250 1360 -5055 7 1675 414 0 0 0 chr3 142962291 142962337 -16637446 + (TG)n Simple_repeat Simple_repeat 2 47 0 7 1675 397 305 85 76 chr3 142962337 142963112 -16636671 + L1MEg LINE L1 1327 2154 -4261 7 1675 389 116 14 0 chr3 142963393 142963462 -16636321 + (TA)n Simple_repeat Simple_repeat 2 71 0 7 1675 554 0 15 0 chr3 142963472 142963538 -16636245 + (TCTA)n Simple_repeat Simple_repeat 2 68 0 7 1675 2359 189 133 29 chr3 142963538 142963940 -16635843 + RMER6C LTR ERVK 8 467 -223 7 1675 963 112 0 0 chr3 142963940 142964101 -16635682 + (GA)n Simple_repeat Simple_repeat 2 162 0 7 1675 2359 189 133 29 chr3 142964101 142964313 -16635470 + RMER6C LTR ERVK 468 685 -5 7 1675 314 297 62 9 chr3 142964325 142964437 -16635346 + L1MEg LINE L1 2998 3115 -3204 7 1675 414 0 0 0 chr3 142964552 142964598 -16635185 + (TG)n Simple_repeat Simple_repeat 2 47 0 7 1675 371 320 123 44 chr3 142964694 142965060 -16634723 + L1MEg LINE L1 5147 5541 -778 7 1675 229 358 56 48 chr3 142965741 142965867 -16633916 + L2a LINE L2 3267 3393 -33 7 1675 1494 220 71 58 chr3 142966359 142966631 -16633152 - MTD LTR MaLR -2 417 142 7 1675 4622 122 22 39 chr3 142966631 142967447 -16632336 - RMER17D2 LTR ERVK -3 806 5 7 1675 1494 220 71 58 chr3 142967447 142967585 -16632198 - MTD LTR MaLR -278 141 2 7 1675 307 371 68 37 chr3 142968821 142969146 -16630637 + L3 LINE CR1 4132 4466 -23 7 1675 453 253 16 47 chr3 142969236 142969379 -16630404 - B4A SINE B4 -12 280 6 7 1675 715 283 116 53 chr3 142969718 142970075 -16629708 + MTD LTR MaLR 2 373 -6 7 1675 186 271 100 0 chr3 142970155 142970225 -16629558 - MIRc SINE MIR -71 197 121 7 1675 351 0 0 0 chr3 142970337 142970376 -16629407 + (TTCA)n Simple_repeat Simple_repeat 3 41 0 7 1675 342 319 126 88 chr3 142971100 142971195 -16628588 - MLT1B LTR MaLR -8 459 371 7 1675 246 125 0 0 chr3 142971195 142971243 -16628540 + (TG)n Simple_repeat Simple_repeat 2 49 0 7 1675 465 19 0 0 chr3 142971246 142971300 -16628483 + (TC)n Simple_repeat Simple_repeat 2 55 0 7 1675 288 0 0 0 chr3 142971300 142971331 -16628452 + (TG)n Simple_repeat Simple_repeat 1 32 0 7 1675 342 319 126 88 chr3 142971331 142971491 -16628292 - MLT1B LTR MaLR -97 370 190 7 1675 410 257 75 9 chr3 142971616 142971722 -16628061 - MLT1B LTR MaLR -237 153 41 7 1675 322 230 0 39 chr3 142971895 142971972 -16627811 - ID2 SINE ID -8 75 2 7 1675 558 0 0 0 chr3 142972046 142972108 -16627675 + (TG)n Simple_repeat Simple_repeat 2 63 0 7 1675 555 275 22 0 chr3 142972119 142972257 -16627526 - RSINE1 SINE B4 -22 143 3 7 1675 361 341 0 6 chr3 142972466 142972634 -16627149 + CT-rich Low_complexity Low_complexity 4 170 0 7 1675 1201 308 42 72 chr3 142972763 142973308 -16626475 - MER44B DNA MER2_type -9 541 13 7 1675 21 36 0 0 chr3 142973382 142973410 -16626373 + AT_rich Low_complexity Low_complexity 1 28 0 7 1675 228 218 58 0 chr3 142973712 142973799 -16625984 - L1MEg LINE L1 -1565 4581 4490 7 1675 418 205 0 90 chr3 142973969 142974157 -16625626 + (TTGTG)n Simple_repeat Simple_repeat 5 175 0 7 1675 210 143 0 0 chr3 142974714 142974749 -16625034 + (TAA)n Simple_repeat Simple_repeat 2 36 0 7 1675 180 0 0 0 chr3 142974770 142974790 -16624993 + (TTA)n Simple_repeat Simple_repeat 2 21 0 7 1675 490 301 8 0 chr3 142974790 142974923 -16624860 - B1_Mur1 SINE Alu -14 135 2 7 1675 251 288 106 21 chr3 142975107 142975295 -16624488 - L1MEg LINE L1 -5403 839 636 7 1675 849 20 0 0 chr3 142976206 142976305 -16623478 + (GGGAGA)n Simple_repeat Simple_repeat 4 102 0 7 1675 204 135 0 0 chr3 142980933 142980970 -16618813 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 7 1675 21 0 0 0 chr3 142981146 142981167 -16618616 + AT_rich Low_complexity Low_complexity 1 21 0 7 1675 323 269 107 142 chr3 142981252 142981421 -16618362 - RSINE1 SINE B4 0 165 3 7 1675 182 135 51 51 chr3 142981778 142981817 -16617966 + L4 LINE RTE 720 758 -1271 7 1675 735 285 125 0 chr3 142981974 142982087 -16617696 + B4 SINE B4 3 137 -155 7 1675 450 0 0 0 chr3 142982087 142982137 -16617646 + (TG)n Simple_repeat Simple_repeat 2 51 0 7 1675 735 285 125 0 chr3 142982137 142982279 -16617504 + B4 SINE B4 138 289 -3 7 1675 280 374 0 45 chr3 142982966 142983078 -16616705 - PB1D10 SINE Alu -4 113 7 7 1675 254 73 24 0 chr3 142983287 142983328 -16616455 + (TTCA)n Simple_repeat Simple_repeat 4 45 0 7 1675 232 261 161 9 chr3 142983332 142983444 -16616339 - L2a LINE L2 -18 3408 3280 7 1675 272 306 81 0 chr3 142983806 142983917 -16615866 - L2a LINE L2 -562 2857 2738 7 1675 232 372 96 18 chr3 142986293 142986460 -16613323 + L2 LINE L2 2787 2966 -453 7 1675 1206 102 0 0 chr3 142986861 142987037 -16612746 + (TTCTC)n Simple_repeat Simple_repeat 3 178 0 7 1675 695 121 0 17 chr3 142987037 142987155 -16612628 + (TCCCC)n Simple_repeat Simple_repeat 3 118 0 7 1675 540 207 0 0 chr3 142987146 142987262 -16612521 + CT-rich Low_complexity Low_complexity 2 117 0 7 1675 673 310 40 53 chr3 142988487 142988787 -16610996 - RMER15 LTR ERVL 0 575 280 7 1675 236 302 117 33 chr3 142988802 142988922 -16610861 - RMER15 LTR ERVL -445 130 1 7 1675 705 276 28 20 chr3 142989731 142989986 -16609797 - L1MA9 LINE L1 -46 6266 6010 7 1675 219 279 14 56 chr3 142992922 142992994 -16606789 + B4 SINE B4 7 75 -217 7 1675 325 212 0 57 chr3 142992931 142993001 -16606782 + ID4_ SINE ID 16 81 -2 7 1675 332 269 77 0 chr3 142993178 142993282 -16606501 - MIR SINE MIR -67 195 84 7 1675 195 42 0 0 chr3 142993382 142993406 -16606377 + (TG)n Simple_repeat Simple_repeat 1 24 0 7 1675 372 43 0 0 chr3 142993406 142993451 -16606332 + (GA)n Simple_repeat Simple_repeat 1 46 0 7 1675 449 300 186 17 chr3 142994976 142995271 -16604512 + Lx8 LINE L1 6883 7227 -246 7 1675 253 202 62 31 chr3 142995336 142995433 -16604350 + Lx8 LINE L1 7346 7445 -28 7 1675 22 0 0 0 chr3 142995451 142995473 -16604310 + AT_rich Low_complexity Low_complexity 1 22 0 7 1675 388 136 23 0 chr3 142997298 142997386 -16602397 + (TATAA)n Simple_repeat Simple_repeat 2 91 0 7 1675 435 280 42 8 chr3 142997531 142997650 -16602133 + L3 LINE CR1 4259 4381 -108 7 1675 214 37 0 0 chr3 142998329 142998356 -16601427 - MER5A DNA MER1_type -44 145 119 7 1675 986 320 137 44 chr3 142998364 142998935 -16600848 - MLT1E3 LTR MaLR 0 624 1 7 1676 230 307 26 26 chr3 143001038 143001115 -16598668 - L2c LINE L2 -45 3342 3266 1 1676 468 249 51 37 chr3 143001533 143001750 -16598033 + L1MDb LINE L1 1083 1302 -5238 2 1676 256 317 0 0 chr3 143001834 143001964 -16597819 + GA-rich Low_complexity Low_complexity 1 130 0 3 1676 374 308 30 66 chr3 143001964 143001994 -16597789 + L1MDb LINE L1 1428 1456 -5083 2 1676 1575 0 0 0 chr3 143001994 143002169 -16597614 + (GGGAGA)n Simple_repeat Simple_repeat 5 179 0 4 1676 374 308 30 66 chr3 143002169 143002305 -16597478 + L1MDb LINE L1 1457 1587 -4952 2 1676 288 0 0 0 chr3 143002338 143002370 -16597413 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 5 1676 273 269 54 54 chr3 143002528 143002732 -16597051 + L1MDb LINE L1 2034 2237 -4396 2 1676 351 0 0 0 chr3 143005907 143005946 -16593837 + (TC)n Simple_repeat Simple_repeat 2 40 0 6 1676 471 35 0 0 chr3 143005946 143006002 -16593781 + (TG)n Simple_repeat Simple_repeat 2 58 0 7 1676 720 242 13 38 chr3 143006927 143007086 -16592697 + B4 SINE B4 51 205 -87 8 1676 576 0 0 0 chr3 143008202 143008266 -16591517 + (TCTA)n Simple_repeat Simple_repeat 3 66 0 9 1676 746 361 73 25 chr3 143008280 143008720 -16591063 - MT2A LTR ERVL -72 461 1 1 1676 561 223 89 27 chr3 143010379 143010527 -16589256 - B3A SINE B2 -3 195 48 1 1676 3342 135 71 16 chr3 143010912 143011476 -16588307 + Lx4A LINE L1 6460 7054 -4 1 1676 207 280 119 18 chr3 143011818 143011927 -16587856 - MIRb SINE MIR -136 132 13 1 1676 213 321 141 33 chr3 143011947 143012094 -16587689 - MIRb SINE MIR -5 257 92 1 1676 358 308 171 16 chr3 143012571 143012794 -16586989 + MIR SINE MIR 4 246 -22 1 1676 202 304 75 21 chr3 143012989 143013083 -16586700 + MER91C DNA Tip100 1 99 -41 1 1676 207 114 29 0 chr3 143013140 143013175 -16586608 + (TA)n Simple_repeat Simple_repeat 2 37 0 1 1676 2587 85 0 0 chr3 143013277 143013619 -16586164 - L1_Mus2 LINE L1 -1 6565 6224 1 1676 3361 49 0 0 chr3 143013621 143014048 -16585735 + L1_Mus2 LINE L1 5793 6219 -347 1 1676 182 37 0 36 chr3 143015681 143015709 -16584074 + (CAAAAA)n Simple_repeat Simple_repeat 5 31 0 1 1676 535 165 15 0 chr3 143016435 143016568 -16583215 + CT-rich Low_complexity Low_complexity 2 136 0 2 1676 2846 56 0 0 chr3 143019289 143019644 -16580139 - L1Md_F2 LINE L1 -1 6581 6227 2 1676 425 288 45 6 chr3 143020064 143020221 -16579562 + RSINE1 SINE B4 3 165 0 2 1676 1114 45 22 17 chr3 143020273 143020452 -16579331 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 2 1676 23785 87 4 6 chr3 143020706 143024830 -16574953 - L1Md_A LINE L1 -1336 4547 217 2 1676 324 0 0 0 chr3 143025104 143025140 -16574643 + (CA)n Simple_repeat Simple_repeat 1 36 0 2 1676 1338 306 55 15 chr3 143025397 143025925 -16573858 - Lx8 LINE L1 -292 7181 6633 2 1676 503 283 144 7 chr3 143025931 143026084 -16573699 + B3A SINE B2 12 185 -13 2 1676 1267 308 12 7 chr3 143026116 143026534 -16573249 - Lx8 LINE L1 -831 6642 6223 2 1676 26 30 0 0 chr3 143026856 143026889 -16572894 + AT_rich Low_complexity Low_complexity 1 33 0 2 1676 202 326 11 0 chr3 143027083 143027172 -16572611 + CT-rich Low_complexity Low_complexity 3 92 0 2 1676 621 330 84 14 chr3 143027305 143027664 -16572119 - MER63B DNA AcHobo -1 435 52 3 1676 1731 212 43 41 chr3 143028102 143028570 -16571213 + RMER6D LTR ERVK 1 469 -251 3 1676 1538 171 133 23 chr3 143028563 143028910 -16570873 + RMER6D LTR ERVK 330 714 -6 3 1676 420 71 0 0 chr3 143029114 143029170 -16570613 + (TG)n Simple_repeat Simple_repeat 1 56 0 3 1676 423 0 0 0 chr3 143029218 143029265 -16570518 + (TA)n Simple_repeat Simple_repeat 2 48 0 3 1676 180 125 0 0 chr3 143029372 143029404 -16570379 + (CAAAA)n Simple_repeat Simple_repeat 5 36 0 3 1676 626 201 12 3 chr3 143029601 143029730 -16570053 + RLTR9B LTR ERVK 264 437 0 3 1676 619 120 0 18 chr3 143030151 143030261 -16569522 + (TTTC)n Simple_repeat Simple_repeat 3 110 0 3 1676 287 49 24 0 chr3 143031467 143031508 -16568275 + (TTTC)n Simple_repeat Simple_repeat 4 45 0 3 1676 21 0 0 0 chr3 143031518 143031539 -16568244 + AT_rich Low_complexity Low_complexity 1 21 0 3 1676 1788 109 7 11 chr3 143031549 143031826 -16567957 - L1_Mus4 LINE L1 0 6636 6361 4 1676 404 19 19 0 chr3 143031855 143031908 -16567875 + (TCTA)n Simple_repeat Simple_repeat 4 57 0 4 1676 248 154 39 0 chr3 143031939 143032017 -16567766 + (CATATA)n Simple_repeat Simple_repeat 2 82 0 4 1676 1130 197 108 20 chr3 143032020 143032315 -16567468 - ORR1D1 LTR MaLR -53 321 1 4 1676 849 244 44 10 chr3 143034115 143034318 -16565465 - B3 SINE B2 -5 211 2 4 1676 1584 156 69 7 chr3 143034863 143035167 -16564616 - RMER6C LTR ERVK -2 688 366 4 1676 2828 67 26 0 chr3 143036069 143036455 -16563328 - L1_Mus3 LINE L1 0 6638 6243 4 1676 488 143 122 0 chr3 143037373 143037494 -16562289 + L1_Mus1 LINE L1 6454 6567 0 4 1676 348 88 0 0 chr3 143037806 143037863 -16561920 + (TAAA)n Simple_repeat Simple_repeat 4 60 0 4 1676 180 0 0 0 chr3 143039572 143039592 -16560191 + (TTG)n Simple_repeat Simple_repeat 2 21 0 4 1676 351 332 66 55 chr3 143043676 143043947 -16555836 - B4 SINE B4 -14 278 5 5 1676 1520 216 50 37 chr3 143045749 143046128 -16553655 + ORR1C2 LTR MaLR 1 384 0 5 1676 1317 190 170 6 chr3 143046263 143046417 -16553366 - ORR1C2 LTR MaLR -1 383 210 5 1676 915 73 0 0 chr3 143046417 143046554 -16553229 + (GA)n Simple_repeat Simple_repeat 2 138 0 5 1676 1317 190 170 6 chr3 143046554 143046728 -16553055 - ORR1C2 LTR MaLR -175 209 2 5 1676 379 264 205 38 chr3 143048109 143048475 -16551308 - Charlie7 DNA MER1_type -1 2611 2185 5 1676 1352 283 16 42 chr3 143048486 143048863 -16550920 - MTE2b LTR MaLR -11 368 2 5 1676 747 340 57 29 chr3 143048874 143049316 -16550467 - Charlie7 DNA MER1_type -439 2173 1720 5 1676 369 333 19 19 chr3 143049357 143049516 -16550267 - Charlie7 DNA MER1_type -988 1624 1466 5 1676 246 417 0 25 chr3 143049728 143049846 -16549937 - Charlie7 DNA MER1_type -2338 274 160 5 1676 330 26 0 0 chr3 143050917 143050956 -16548827 + (TA)n Simple_repeat Simple_repeat 1 39 0 5 1676 370 300 94 117 chr3 143051853 143052151 -16547632 - B4A SINE B4 0 292 2 5 1676 275 292 43 71 chr3 143052189 143052329 -16547454 - MIRb SINE MIR 0 268 133 5 1676 253 247 141 20 chr3 143052447 143052546 -16547237 + Tigger15a DNA TcMar 601 711 -4 5 1676 421 258 23 38 chr3 143052779 143052912 -16546871 - MamRep434 DNA TcMar -294 132 2 6 1676 235 294 53 21 chr3 143053674 143053768 -16546015 + ID4 SINE ID 4 100 -52 6 1676 933 166 0 0 chr3 143054564 143054733 -16545050 + CT-rich Low_complexity Low_complexity 2 170 0 6 1676 282 322 0 26 chr3 143055057 143055210 -16544573 + (TATATG)n Simple_repeat Simple_repeat 2 150 0 6 1676 432 0 0 0 chr3 143055433 143055481 -16544302 + (TCCA)n Simple_repeat Simple_repeat 2 49 0 6 1676 472 160 20 0 chr3 143055683 143055783 -16544000 + (TA)n Simple_repeat Simple_repeat 2 103 0 6 1676 335 269 0 0 chr3 143056315 143056423 -16543360 - L1MA7 LINE L1 -6 6285 6178 6 1676 309 26 0 0 chr3 143056644 143056682 -16543101 + (TG)n Simple_repeat Simple_repeat 2 39 0 6 1676 578 337 59 31 chr3 143056725 143056979 -16542804 - B4A SINE B4 -30 262 2 6 1676 468 272 28 110 chr3 143056979 143057297 -16542486 - L1MA7 LINE L1 -340 5951 5660 6 1676 2147 249 92 8 chr3 143058482 143059078 -16540705 - Lx5 LINE L1 -5 7045 6400 6 1676 2136 250 36 12 chr3 143059072 143059654 -16540129 + Lx5 LINE L1 5808 6403 -647 6 1676 714 152 0 0 chr3 143061152 143061277 -16538506 + (TA)n Simple_repeat Simple_repeat 2 126 0 7 1676 899 60 0 0 chr3 143061921 143062038 -16537745 - B1_Mus1 SINE Alu 0 148 32 7 1676 1365 205 93 39 chr3 143062314 143062669 -16537114 + ORR1D1 LTR MaLR 1 374 0 7 1676 468 281 82 33 chr3 143063154 143063500 -16536283 - Charlie1b DNA MER1_type -18 505 67 7 1676 204 315 11 11 chr3 143064310 143064403 -16535380 + (TA)n Simple_repeat Simple_repeat 2 94 0 7 1676 213 39 0 0 chr3 143065531 143065557 -16534226 + (GGAA)n Simple_repeat Simple_repeat 3 28 0 7 1676 885 198 0 0 chr3 143065557 143065805 -16533978 + GA-rich Low_complexity Low_complexity 1 248 0 7 1676 25 0 0 0 chr3 143066468 143066493 -16533290 + AT_rich Low_complexity Low_complexity 1 25 0 7 1676 28 0 0 0 chr3 143066787 143066815 -16532968 + AT_rich Low_complexity Low_complexity 1 28 0 7 1676 375 157 0 0 chr3 143067515 143067585 -16532198 + (CA)n Simple_repeat Simple_repeat 2 71 0 7 1676 1196 293 123 22 chr3 143068136 143068685 -16531098 + Tigger7 DNA MER2_type 2 617 -1874 8 1676 250 284 53 13 chr3 143068667 143068742 -16531041 + Tigger7 DNA MER2_type 2403 2480 -11 8 1676 591 150 362 16 chr3 143069445 143069688 -16530095 + Lx9 LINE L1 7310 7636 -8 8 1676 570 51 0 0 chr3 143069742 143069820 -16529963 + (CA)n Simple_repeat Simple_repeat 2 79 0 8 1676 288 111 0 0 chr3 143072779 143072833 -16526950 + (TAA)n Simple_repeat Simple_repeat 2 55 0 8 1676 22 0 0 0 chr3 143074170 143074192 -16525591 + AT_rich Low_complexity Low_complexity 1 22 0 8 1676 244 217 0 0 chr3 143075448 143075494 -16524289 - MER45A DNA Tip100 -4 174 129 8 1676 289 277 171 7 chr3 143075945 143076144 -16523639 - MIR SINE MIR -1 261 27 8 1676 267 241 0 0 chr3 143076875 143076958 -16522825 + CT-rich Low_complexity Low_complexity 4 86 0 8 1676 4156 133 3 22 chr3 143077078 143077761 -16522022 - Lx3B LINE L1 -4 6969 6300 8 1676 243 188 0 0 chr3 143078524 143078572 -16521211 + (TA)n Simple_repeat Simple_repeat 1 48 0 8 1676 28 48 0 0 chr3 143078583 143078625 -16521158 + AT_rich Low_complexity Low_complexity 1 42 0 9 1676 190 353 0 0 chr3 143079251 143079319 -16520464 + L2a LINE L2 3359 3426 0 9 1676 255 61 0 0 chr3 143079656 143079689 -16520094 + (CA)n Simple_repeat Simple_repeat 2 34 0 9 1676 454 141 16 16 chr3 143079690 143079813 -16519970 + (CAGAGA)n Simple_repeat Simple_repeat 2 124 0 9 1676 244 287 39 16 chr3 143081992 143082080 -16517703 + MIR SINE MIR 63 157 -119 9 1676 471 18 0 0 chr3 143082710 143082766 -16517017 + (CCA)n Simple_repeat Simple_repeat 3 58 0 9 1676 207 0 0 0 chr3 143082766 143082789 -16516994 + (CAA)n Simple_repeat Simple_repeat 2 24 0 9 1676 278 212 0 29 chr3 143083771 143083839 -16515944 + ID_B1 SINE B4 82 147 -77 9 1676 300 70 0 0 chr3 143085201 143085244 -16514539 + (TG)n Simple_repeat Simple_repeat 2 44 0 9 1676 682 232 39 44 chr3 143085336 143085516 -16514267 - B3A SINE B2 0 198 20 9 1676 223 87 43 21 chr3 143086416 143086463 -16513320 + CT-rich Low_complexity Low_complexity 2 49 0 1 1676 1040 293 20 36 chr3 143087219 143087577 -16512206 - ORR1E LTR MaLR -2 357 6 1 1676 184 288 90 67 chr3 143087695 143087829 -16511954 - MIRb SINE MIR -21 247 111 1 1676 285 128 0 0 chr3 143088712 143088759 -16511024 + (TCCC)n Simple_repeat Simple_repeat 4 50 0 1 1676 387 60 0 0 chr3 143090300 143090350 -16509433 + (TGAG)n Simple_repeat Simple_repeat 2 51 0 1 1676 288 333 108 8 chr3 143091278 143091408 -16508375 - MIR SINE MIR -20 242 100 1 1676 24 32 0 0 chr3 143091638 143091669 -16508114 + AT_rich Low_complexity Low_complexity 1 31 0 1 1676 25 0 0 0 chr3 143091777 143091802 -16507981 + AT_rich Low_complexity Low_complexity 1 25 0 1 1676 1345 161 118 4 chr3 143091802 143092064 -16507719 - Lx4A LINE L1 -3 7055 6764 1 1676 1719 97 166 3 chr3 143092063 143092364 -16507419 + L1_Mur2 LINE L1 5013 5362 -515 1 1676 513 151 0 0 chr3 143092365 143092451 -16507332 - 4.5SRNA scRNA scRNA -7 87 2 1 1676 4011 208 34 10 chr3 143092451 143093426 -16506357 + Lx2B LINE L1 5967 6996 -4 1 1676 2059 128 97 3 chr3 143093420 143093782 -16506001 + L1_Mur2 LINE L1 5351 5746 -131 1 1676 282 252 230 24 chr3 143093995 143094121 -16505662 + MIRb SINE MIR 10 161 -107 1 1676 315 261 126 81 chr3 143094276 143094585 -16505198 - MER33 DNA MER1_type -1 323 1 1 1676 1163 51 23 0 chr3 143095241 143095417 -16504366 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 1 1676 416 271 51 13 chr3 143095445 143095602 -16504181 - RSINE1 SINE B4 0 165 3 1 1676 2831 41 0 3 chr3 143096030 143096374 -16503409 + L1Md_F3 LINE L1 6226 6568 -16 1 1676 432 37 0 0 chr3 143097538 143097592 -16502191 + (TG)n Simple_repeat Simple_repeat 2 55 0 1 1676 231 36 0 0 chr3 143099409 143099437 -16500346 + (TG)n Simple_repeat Simple_repeat 1 28 0 1 1676 251 283 0 29 chr3 143099443 143099545 -16500238 - Lx8 LINE L1 -29 7444 7346 1 1676 505 300 33 0 chr3 143099584 143099734 -16500049 - Lx8 LINE L1 -205 7268 7114 1 1676 1679 226 6 3 chr3 143099734 143100058 -16499725 - ORR1D1 LTR MaLR -49 325 1 1 1676 24 0 0 0 chr3 143101334 143101358 -16498425 + AT_rich Low_complexity Low_complexity 1 24 0 1 1676 2069 184 31 0 chr3 143101818 143102176 -16497607 + MTC LTR MaLR 1 369 -52 1 1676 1611 199 54 56 chr3 143102222 143102638 -16497145 + ORR1B2 LTR MaLR 3 417 -2 1 1676 4070 195 161 43 chr3 143102650 143103749 -16496034 + ORR1B2-int LTR MaLR 28 1256 -2 1 1676 1585 229 98 8 chr3 143103751 143104130 -16495653 + ORR1B2 LTR MaLR 1 413 -8 1 1676 214 193 17 34 chr3 143104235 143104294 -16495489 + GA-rich Low_complexity Low_complexity 3 60 0 1 1676 930 141 11 6 chr3 143104294 143104426 -16495357 + polypurine Low_complexity Low_complexity 2 134 0 1 1676 1005 158 0 0 chr3 143104426 143104603 -16495180 + GA-rich Low_complexity Low_complexity 3 179 0 1 1676 930 141 11 6 chr3 143104603 143104648 -16495135 + polypurine Low_complexity Low_complexity 135 179 0 1 1676 234 0 0 0 chr3 143104886 143104912 -16494871 + (TG)n Simple_repeat Simple_repeat 1 26 0 1 1676 530 82 0 49 chr3 143104926 143105028 -16494755 + (AGGGGG)n Simple_repeat Simple_repeat 2 98 0 1 1676 516 229 156 30 chr3 143105028 143105163 -16494620 - B3 SINE B2 -62 154 3 1 1676 2599 154 13 34 chr3 143105352 143105823 -16493960 - RMER6B LTR ERVK 0 461 1 1 1676 605 366 140 11 chr3 143106094 143106445 -16493338 + LTR33B LTR ERVL 10 405 -98 1 1676 1045 201 54 5 chr3 143106790 143106995 -16492788 - B3 SINE B2 0 216 2 1 1676 881 300 53 47 chr3 143108292 143108764 -16491019 + Lx8 LINE L1 6060 6534 -939 1 1676 386 289 22 0 chr3 143108885 143109020 -16490763 - L1MD3 LINE L1 -10 7985 7848 1 1676 2651 55 0 0 chr3 143109037 143109380 -16490403 + L1Md_F2 LINE L1 5833 6175 -407 1 1676 239 26 79 0 chr3 143109396 143109434 -16490349 + (CAAAA)n Simple_repeat Simple_repeat 2 42 0 1 1676 440 301 121 30 chr3 143109528 143110059 -16489724 - L1MC3 LINE L1 -280 7602 6923 1 1676 2829 56 3 0 chr3 143111891 143112248 -16487535 - L1Md_F2 LINE L1 -3 6579 6222 1 1676 1616 40 0 0 chr3 143112248 143112450 -16487333 + L1Md_F2 LINE L1 6028 6229 -353 1 1676 397 333 40 0 chr3 143112658 143112784 -16486999 + B1F SINE Alu 1 131 -18 1 1676 2068 78 106 101 chr3 143112939 143113296 -16486487 - RLTR10D LTR ERVK 0 359 1 1 1676 21 0 0 0 chr3 143113811 143113832 -16485951 + AT_rich Low_complexity Low_complexity 1 21 0 1 1676 21 36 0 0 chr3 143115118 143115146 -16484637 + AT_rich Low_complexity Low_complexity 1 28 0 1 1676 195 42 0 0 chr3 143115569 143115593 -16484190 + (T)n Simple_repeat Simple_repeat 1 24 0 1 1676 202 0 29 57 chr3 143116512 143116547 -16483236 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 1 1676 1085 82 7 33 chr3 143116549 143116700 -16483083 - B1_Mus2 SINE Alu 0 147 1 1 1676 231 231 14 71 chr3 143119665 143119735 -16480048 - ID4 SINE ID -16 67 2 1 1676 3867 173 21 14 chr3 143122514 143123228 -16476555 - Lx3C LINE L1 -4 6972 6254 1 1676 202 358 0 12 chr3 143123389 143123471 -16476312 + CT-rich Low_complexity Low_complexity 2 82 0 1 1676 399 259 92 0 chr3 143123653 143123784 -16475999 - B1F SINE Alu -2 147 5 1 1676 252 0 0 0 chr3 143123798 143123826 -16475957 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 1 1676 747 301 46 0 chr3 143123830 143124026 -16475757 - MTEa LTR MaLR -108 271 67 1 1676 180 277 224 24 chr3 143124513 143124598 -16475185 - MIR SINE MIR -84 124 23 1 1676 21 0 0 0 chr3 143126209 143126230 -16473553 + AT_rich Low_complexity Low_complexity 1 21 0 1 1676 398 290 97 18 chr3 143126403 143126648 -16473135 + Lx5 LINE L1 6076 6361 -689 1 1676 867 253 46 58 chr3 143126666 143126926 -16472857 + Lx5 LINE L1 6479 6735 -315 1 1676 920 223 5 5 chr3 143127672 143127857 -16471926 - URR1A DNA MER1_type -41 185 1 1 1676 210 385 0 0 chr3 143128320 143128424 -16471359 + MIRc SINE MIR 162 265 -3 1 1676 28 29 0 0 chr3 143129326 143129361 -16470422 + AT_rich Low_complexity Low_complexity 1 35 0 1 1677 286 200 83 10 chr3 143131549 143131645 -16468138 + (CATATA)n Simple_repeat Simple_repeat 3 105 0 1 1677 855 269 58 30 chr3 143132441 143132802 -16466981 + ORSL-2b DNA Tip100 85 455 -53 1 1677 862 252 116 27 chr3 143133532 143133835 -16465948 + ORR1E LTR MaLR 32 377 -2 1 1677 471 339 60 35 chr3 143134967 143135314 -16464469 + ORR1E LTR MaLR 3 362 -8 1 1677 258 228 32 21 chr3 143135476 143135570 -16464213 - MER5A1 DNA MER1_type -65 101 7 1 1677 2729 282 99 91 chr3 143136937 143138783 -16461000 - BLACKJACK DNA AcHobo -213 2731 871 1 1677 189 0 0 0 chr3 143138863 143138884 -16460899 + (TG)n Simple_repeat Simple_repeat 1 21 0 1 1677 344 348 86 9 chr3 143138955 143139071 -16460712 - B4A SINE B4 -12 280 156 1 1677 264 329 39 74 chr3 143139208 143139464 -16460319 - L2 LINE L2 -613 2806 2560 1 1677 266 282 35 0 chr3 143139520 143139605 -16460178 - ORR1D1 LTR MaLR -2 372 285 1 1677 273 274 39 52 chr3 143139845 143139922 -16459861 - PB1D7 SINE Alu -28 92 17 1 1677 243 296 12 0 chr3 143140435 143140516 -16459267 - Lx9 LINE L1 -749 6895 6814 1 1677 348 238 7 13 chr3 143140554 143140703 -16459080 + CT-rich Low_complexity Low_complexity 2 149 0 1 1677 953 183 81 59 chr3 143140791 143141012 -16458771 + URR1A DNA MER1_type 1 226 0 1 1677 432 91 0 0 chr3 143141452 143141518 -16458265 + (TG)n Simple_repeat Simple_repeat 2 67 0 1 1677 731 330 70 11 chr3 143141560 143141830 -16457953 - B4A SINE B4 -6 286 1 1 1677 23 33 0 0 chr3 143141931 143141961 -16457822 + AT_rich Low_complexity Low_complexity 1 30 0 1 1677 355 311 0 19 chr3 143143281 143143302 -16456481 - MER44B DNA MER2_type -384 166 146 1 1677 3447 81 15 11 chr3 143143302 143143775 -16456008 + MT2C_Mm LTR ERVL 1 475 0 1 1677 355 311 0 19 chr3 143143775 143143861 -16455922 - MER44B DNA MER2_type -405 145 61 1 1677 2955 61 58 0 chr3 143143874 143144252 -16455531 + MTB LTR MaLR 1 400 0 1 1677 581 273 169 6 chr3 143144260 143144437 -16455346 + B4A SINE B4 23 228 -64 1 1677 528 279 32 16 chr3 143144443 143144567 -16455216 + B3A SINE B2 5 130 -68 1 1677 458 33 0 16 chr3 143144576 143144637 -16455146 + (CA)n Simple_repeat Simple_repeat 1 60 0 1 1677 322 221 15 0 chr3 143144690 143144758 -16455025 + B4 SINE B4 222 290 -2 1 1677 472 333 58 11 chr3 143145749 143145940 -16453843 + RMER30 DNA MER1_type 2 201 -1 1 1677 1730 268 116 23 chr3 143146376 143147240 -16452543 + Lx6 LINE L1 396 1339 -6389 1 1677 246 229 0 0 chr3 143147240 143147310 -16452473 + (CCA)n Simple_repeat Simple_repeat 3 72 0 1 1677 14690 173 45 90 chr3 143147315 143149121 -16450662 + Lx6 LINE L1 2068 3647 -2233 1 1677 4776 129 23 18 chr3 143149121 143149892 -16449891 + Lx LINE L1 5874 6648 -6 1 1677 14690 173 45 90 chr3 143149892 143150094 -16449689 + Lx6 LINE L1 3648 3840 -2040 1 1677 723 81 0 0 chr3 143150094 143150193 -16449590 + (GAAA)n Simple_repeat Simple_repeat 3 101 0 1 1677 14690 172 38 77 chr3 143150193 143152222 -16447561 + Lx6 LINE L1 3841 5929 -1531 1 1677 618 51 0 0 chr3 143152892 143152970 -16446813 + (TAGG)n Simple_repeat Simple_repeat 1 78 0 1 1677 3543 263 132 8 chr3 143153044 143154341 -16445442 - Lx6 LINE L1 -13 7447 5991 1 1677 419 0 0 19 chr3 143155239 143155291 -16444492 + (TG)n Simple_repeat Simple_repeat 2 52 0 1 1677 506 252 204 40 chr3 143155303 143155528 -16444255 - B4 SINE B4 -18 274 13 1 1677 347 79 0 31 chr3 143155620 143155685 -16444098 + (CAGAGA)n Simple_repeat Simple_repeat 2 64 0 1 1677 752 190 7 4 chr3 143155686 143155852 -16443931 - ORR1D1 LTR MaLR -210 168 1 1 1677 411 21 0 0 chr3 143156013 143156061 -16443722 + (CA)n Simple_repeat Simple_repeat 2 49 0 1 1677 324 308 72 50 chr3 143158116 143158297 -16441486 - MIR SINE MIR -1 261 77 1 1677 276 283 59 29 chr3 143159315 143159417 -16440366 + PB1D10 SINE Alu 3 107 -10 1 1677 383 258 32 40 chr3 143162810 143162935 -16436848 - MTEa LTR MaLR 0 379 256 1 1677 6801 119 5 5 chr3 143165595 143166765 -16433018 + Lx2 LINE L1 5474 6643 -354 1 1677 1465 112 0 9 chr3 143166765 143166990 -16432793 + Lx2 LINE L1 6775 6997 0 1 1677 209 59 0 56 chr3 143166990 143167026 -16432757 + (GAAAA)n Simple_repeat Simple_repeat 1 34 0 1 1677 1141 236 104 92 chr3 143167771 143167809 -16431974 - RCHARR1 DNA MER1_type -2 972 929 2 1677 354 23 0 0 chr3 143167809 143167852 -16431931 + (TG)n Simple_repeat Simple_repeat 2 44 0 2 1677 1141 236 104 92 chr3 143167852 143167946 -16431837 - RCHARR1 DNA MER1_type -46 928 817 2 1677 1528 60 0 5 chr3 143167946 143168146 -16431637 - L1Md_F3 LINE L1 -14 6570 6372 2 1677 1141 236 104 92 chr3 143168146 143168502 -16431281 - RCHARR1 DNA MER1_type -158 816 477 2 1677 581 258 15 15 chr3 143168492 143168622 -16431161 - B1_Mur1 SINE Alu -7 142 13 2 1677 1212 265 84 25 chr3 143168638 143169006 -16430777 - RCHARR1 DNA MER1_type -486 488 99 2 1677 898 330 17 34 chr3 143169137 143169400 -16430383 + B4A SINE B4 6 265 -27 2 1677 294 29 0 0 chr3 143169400 143169435 -16430348 + (TG)n Simple_repeat Simple_repeat 2 36 0 2 1677 898 330 17 34 chr3 143169435 143169463 -16430320 + B4A SINE B4 266 292 0 2 1677 432 82 0 0 chr3 143170039 143170100 -16429683 + (CA)n Simple_repeat Simple_repeat 1 61 0 2 1677 186 167 0 0 chr3 143170349 143170385 -16429398 + GA-rich Low_complexity Low_complexity 1 36 0 2 1677 459 78 0 0 chr3 143171647 143171711 -16428072 + (GA)n Simple_repeat Simple_repeat 1 64 0 2 1677 191 344 77 53 chr3 143171769 143171938 -16427845 + MER5B DNA MER1_type 1 173 -5 2 1677 1350 265 56 93 chr3 143173200 143173452 -16426331 - RMER5 LTR ERV1 0 534 315 2 1677 2314 140 23 18 chr3 143173452 143173844 -16425939 - ORR1B1 LTR MaLR 0 394 1 2 1677 1350 265 56 93 chr3 143173844 143174131 -16425652 - RMER5 LTR ERV1 -220 314 15 2 1677 627 14 0 0 chr3 143174665 143174737 -16425046 + (GA)n Simple_repeat Simple_repeat 1 72 0 2 1677 324 102 0 0 chr3 143176102 143176151 -16423632 + (TG)n Simple_repeat Simple_repeat 2 50 0 2 1677 456 62 0 0 chr3 143176155 143176219 -16423564 + (CAGAGA)n Simple_repeat Simple_repeat 2 65 0 2 1677 2459 191 47 35 chr3 143179268 143179805 -16419978 - RLTR20B3 LTR ERVK -13 564 22 2 1677 524 365 0 0 chr3 143181760 143181897 -16417886 + RSINE1 SINE B4 3 139 -26 2 1677 414 0 0 0 chr3 143181902 143181948 -16417835 + (CA)n Simple_repeat Simple_repeat 2 47 0 2 1677 471 255 166 0 chr3 143182010 143182167 -16417616 - B3A SINE B2 -15 183 1 2 1677 438 69 0 0 chr3 143182691 143182749 -16417034 + (TA)n Simple_repeat Simple_repeat 2 59 0 2 1677 261 0 0 0 chr3 143184181 143184210 -16415573 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2 1677 755 338 35 35 chr3 143184336 143184621 -16415162 + B4A SINE B4 2 286 -6 2 1677 275 320 115 0 chr3 143184780 143184936 -16414847 - LTR16B1 LTR ERVL -1 479 306 2 1677 819 339 38 16 chr3 143185253 143185568 -16414215 - MLT1A0 LTR MaLR -9 356 35 2 1677 195 42 0 0 chr3 143185624 143185648 -16414135 + (GGAGA)n Simple_repeat Simple_repeat 5 28 0 2 1677 432 358 111 60 chr3 143186130 143186582 -16413201 + LTR16E1 LTR ERVL 4 478 -60 2 1677 358 231 0 82 chr3 143186726 143186811 -16412972 - PB1D10 SINE Alu -6 111 34 2 1677 713 244 118 10 chr3 143187037 143187232 -16412551 - B3 SINE B2 0 216 1 2 1677 566 224 212 35 chr3 143187661 143187861 -16411922 - B4A SINE B4 -16 276 54 2 1677 270 0 0 0 chr3 143187861 143187891 -16411892 + (CA)n Simple_repeat Simple_repeat 1 30 0 2 1677 603 0 0 0 chr3 143187891 143187957 -16411826 + (GA)n Simple_repeat Simple_repeat 2 68 0 2 1677 566 224 212 35 chr3 143187957 143187986 -16411797 - B4A SINE B4 -239 53 6 2 1677 210 37 0 0 chr3 143189116 143189143 -16410640 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2 1677 1098 67 0 0 chr3 143189143 143189278 -16410505 - B1_Mus2 SINE Alu -11 136 2 2 1677 351 209 135 14 chr3 143189527 143189668 -16410115 - L1ME2z LINE L1 -581 5863 5706 2 1677 375 270 130 33 chr3 143189682 143189958 -16409825 - L1M4 LINE L1 -2396 4248 3946 2 1677 219 231 0 19 chr3 143190229 143190282 -16409501 + (TG)n Simple_repeat Simple_repeat 1 52 0 2 1677 281 325 47 21 chr3 143190332 143190568 -16409215 - L1M4 LINE L1 -4438 2302 2061 2 1677 297 0 0 0 chr3 143190764 143190797 -16408986 + (TTTG)n Simple_repeat Simple_repeat 4 36 0 2 1677 238 186 133 97 chr3 143191058 143191171 -16408612 - PB1 SINE Alu 0 127 11 2 1677 320 227 171 9 chr3 143191070 143191181 -16408602 - ID_B1 SINE B4 -14 210 82 2 1677 848 293 80 65 chr3 143191802 143193099 -16406684 - L1MB7 LINE L1 -13 6171 4856 2 1677 493 372 4 4 chr3 143193679 143193922 -16405861 - L1M4 LINE L1 -6289 253 11 2 1677 26 30 0 0 chr3 143193927 143193960 -16405823 + AT_rich Low_complexity Low_complexity 1 33 0 2 1677 274 321 44 18 chr3 143194701 143194815 -16404968 + LTR33 LTR ERVL 378 494 -21 2 1677 783 258 83 50 chr3 143196275 143196516 -16403267 + B4 SINE B4 41 289 -3 2 1677 312 327 136 7 chr3 143196677 143196831 -16402952 - MIR SINE MIR -19 243 70 2 1677 504 0 0 0 chr3 143197170 143197226 -16402557 + (TA)n Simple_repeat Simple_repeat 2 57 0 2 1677 192 226 78 53 chr3 143199816 143199935 -16399848 - MIRc SINE MIR -17 251 140 2 1677 480 69 28 47 chr3 143200172 143200278 -16399505 + (TCCC)n Simple_repeat Simple_repeat 4 107 0 2 1677 354 23 0 0 chr3 143200418 143200461 -16399322 + (CA)n Simple_repeat Simple_repeat 1 43 0 2 1677 530 54 14 0 chr3 143201258 143201332 -16398451 + (TAGA)n Simple_repeat Simple_repeat 3 77 0 2 1677 346 287 123 8 chr3 143202159 143202289 -16397494 - RMER15 LTR ERVL -59 516 372 2 1677 516 127 0 38 chr3 143202505 143202611 -16397172 - L1Md_F2 LINE L1 0 6582 6481 2 1677 193 109 0 42 chr3 143202672 143202720 -16397063 + T-rich Low_complexity Low_complexity 2 47 0 2 1677 1798 238 28 20 chr3 143202722 143203064 -16396719 + MTD LTR MaLR 12 363 -56 2 1677 3590 31 28 5 chr3 143203064 143203490 -16396293 + RLTR10C LTR ERVK 1 436 0 2 1677 1798 238 28 20 chr3 143203490 143203538 -16396245 + MTD LTR MaLR 364 405 -14 2 1677 455 0 18 0 chr3 143205004 143205059 -16394724 + (CA)n Simple_repeat Simple_repeat 2 57 0 2 1677 22 35 0 0 chr3 143205358 143205387 -16394396 + AT_rich Low_complexity Low_complexity 1 29 0 2 1677 321 118 0 0 chr3 143206683 143206734 -16393049 + (CA)n Simple_repeat Simple_repeat 2 52 0 2 1677 1803 194 45 5 chr3 143206839 143207213 -16392570 + ORR1D1-int LTR MaLR 982 1370 0 2 1677 640 263 51 0 chr3 143207213 143207369 -16392414 + ORR1D1 LTR MaLR 1 164 -210 2 1677 1105 256 88 47 chr3 143208314 143208634 -16391149 - MTE2b LTR MaLR -31 348 16 2 1677 612 40 0 0 chr3 143208714 143208789 -16390994 + (TTTC)n Simple_repeat Simple_repeat 2 76 0 2 1677 207 0 0 0 chr3 143209955 143209978 -16389805 + (TG)n Simple_repeat Simple_repeat 1 23 0 2 1677 556 312 150 28 chr3 143212439 143212693 -16387090 + B4A SINE B4 7 291 -1 2 1677 711 287 34 58 chr3 143212818 143213025 -16386758 + B4A SINE B4 2 203 -89 2 1677 1985 146 21 82 chr3 143213025 143213405 -16386378 - ORR1B1 LTR MaLR 0 394 38 2 1677 419 247 11 0 chr3 143213406 143213499 -16386284 + B4A SINE B4 197 290 -2 2 1677 228 340 27 45 chr3 143214310 143214421 -16385362 + PB1 SINE Alu 1 109 -18 2 1677 477 50 0 0 chr3 143215109 143215169 -16384614 + (TG)n Simple_repeat Simple_repeat 1 60 0 2 1677 406 22 118 11 chr3 143216322 143216415 -16383368 + (CTATA)n Simple_repeat Simple_repeat 3 105 0 2 1677 364 313 53 78 chr3 143217724 143218005 -16381778 - MLT2D LTR ERVL -90 324 51 2 1677 372 326 19 11 chr3 143218028 143218146 -16381637 + B4 SINE B4 64 190 -102 2 1677 198 0 0 0 chr3 143218150 143218172 -16381611 + (TCTA)n Simple_repeat Simple_repeat 1 22 0 2 1677 961 189 9 27 chr3 143218172 143218383 -16381400 - B2_Mm2 SINE B2 -11 205 1 2 1677 227 355 21 166 chr3 143218383 143218516 -16381267 + B4 SINE B4 166 277 -15 2 1677 237 356 0 0 chr3 143218552 143218642 -16381141 - MLT2D LTR ERVL -464 92 3 2 1677 671 247 91 27 chr3 143219526 143219721 -16380062 - B3 SINE B2 -6 192 2 2 1677 724 29 19 0 chr3 143220259 143220364 -16379419 - L1Md_F3 LINE L1 -2 6582 6476 2 1677 401 38 0 0 chr3 143220364 143220417 -16379366 + L1Md_F3 LINE L1 6412 6464 -120 2 1677 663 48 0 0 chr3 143220414 143220497 -16379286 + L1Md_T LINE L1 6102 6184 -398 2 1677 671 310 55 4 chr3 143220497 143220747 -16379036 - MTD LTR MaLR -140 239 8 2 1677 225 384 65 52 chr3 143221334 143221625 -16378158 - MLT1I LTR MaLR 0 411 117 2 1677 326 393 87 8 chr3 143221871 143222135 -16377648 + MLT1I LTR MaLR 109 393 -18 2 1677 288 0 0 0 chr3 143222180 143222212 -16377571 + (CA)n Simple_repeat Simple_repeat 2 33 0 2 1677 2208 97 0 0 chr3 143222358 143222657 -16377126 - L1_Mm LINE L1 -900 4983 4685 2 1677 2846 62 0 48 chr3 143222658 143223051 -16376732 + L1_Mus1 LINE L1 6194 6567 0 2 1677 549 0 0 0 chr3 143223956 143224017 -16375766 + (GA)n Simple_repeat Simple_repeat 2 62 0 2 1677 456 209 0 0 chr3 143226377 143226549 -16373234 + CT-rich Low_complexity Low_complexity 1 172 0 2 1677 495 0 0 0 chr3 143227493 143227548 -16372235 + (TG)n Simple_repeat Simple_repeat 2 56 0 2 1677 535 283 45 19 chr3 143227976 143228131 -16371652 - RSINE1 SINE B4 -4 161 3 2 1677 213 196 0 0 chr3 143230833 143230879 -16368904 + CT-rich Low_complexity Low_complexity 1 46 0 2 1677 396 0 0 0 chr3 143231162 143231206 -16368577 + (TG)n Simple_repeat Simple_repeat 1 44 0 2 1677 605 142 7 0 chr3 143231206 143231347 -16368436 + (GA)n Simple_repeat Simple_repeat 2 143 0 2 1677 390 21 0 0 chr3 143231421 143231468 -16368315 + (TG)n Simple_repeat Simple_repeat 1 47 0 2 1677 273 337 0 10 chr3 143231470 143231569 -16368214 - B4A SINE B4 -10 282 185 2 1677 724 192 121 36 chr3 143232461 143232709 -16367074 + Lx9 LINE L1 7372 7640 -4 2 1677 200 377 66 0 chr3 143233736 143233842 -16365941 - L2b LINE L2 0 3375 3263 2 1677 223 283 96 21 chr3 143234112 143234206 -16365577 - PB1D10 SINE Alu 0 117 17 2 1677 260 111 0 22 chr3 143234327 143234373 -16365410 + (TTCC)n Simple_repeat Simple_repeat 3 47 0 2 1677 598 308 29 17 chr3 143234482 143234720 -16365063 - L1MC1 LINE L1 0 6333 6093 2 1677 2042 212 64 45 chr3 143234759 143235243 -16364540 - Lx4B LINE L1 -4 7054 6562 2 1677 833 188 81 0 chr3 143235240 143235389 -16364394 + Lx5 LINE L1 6734 6894 -156 2 1677 2069 146 16 1 chr3 143235293 143235678 -16364105 - Lx5 LINE L1 -376 6682 6251 2 1677 541 244 91 47 chr3 143235681 143235956 -16363827 - L1MC1 LINE L1 -226 6107 5821 2 1677 294 95 0 0 chr3 143236288 143236330 -16363453 + (CAAG)n Simple_repeat Simple_repeat 2 43 0 2 1677 272 298 73 0 chr3 143237934 143238058 -16361725 + MER33 DNA MER1_type 167 299 -25 2 1677 241 348 11 0 chr3 143240120 143240212 -16359571 - MIRc SINE MIR -102 166 74 2 1677 706 283 27 0 chr3 143240344 143240528 -16359255 - B4A SINE B4 -56 236 48 3 1677 356 191 0 0 chr3 143241958 143242021 -16357762 - PB1D7 SINE Alu -55 65 3 3 1677 333 332 30 55 chr3 143244910 143245181 -16354602 + MER45B DNA Tip100 88 351 -689 3 1677 667 238 26 19 chr3 143245258 143245412 -16354371 + B3A SINE B2 3 157 -41 3 1677 449 104 0 13 chr3 143245412 143245490 -16354293 + (GA)n Simple_repeat Simple_repeat 2 78 0 3 1677 391 319 76 14 chr3 143245527 143245737 -16354046 + MER45B DNA Tip100 403 625 -415 3 1677 636 299 93 27 chr3 143245764 143246097 -16353686 + MER45B DNA Tip100 677 1031 -9 3 1677 470 108 12 0 chr3 143246618 143246701 -16353082 + (TCTA)n Simple_repeat Simple_repeat 2 85 0 3 1677 426 20 0 0 chr3 143246707 143246758 -16353025 + (TG)n Simple_repeat Simple_repeat 2 52 0 3 1677 639 248 195 36 chr3 143246763 143247014 -16352769 - B4 SINE B4 0 292 2 3 1677 333 0 0 0 chr3 143247189 143247226 -16352557 + (TG)n Simple_repeat Simple_repeat 2 38 0 3 1677 434 108 14 0 chr3 143247226 143247299 -16352484 + (TA)n Simple_repeat Simple_repeat 2 76 0 3 1677 268 254 0 0 chr3 143247327 143247390 -16352393 - MIR SINE MIR -123 139 77 3 1677 201 150 63 48 chr3 143247580 143247643 -16352140 + T-rich Low_complexity Low_complexity 1 64 0 3 1677 234 263 26 0 chr3 143248897 143248973 -16350810 + MER53 DNA hAT 1 78 -115 3 1677 489 34 0 0 chr3 143249161 143249220 -16350563 + (TG)n Simple_repeat Simple_repeat 2 60 0 3 1677 604 242 212 35 chr3 143249256 143249487 -16350296 - B4A SINE B4 -16 276 5 3 1677 468 0 0 0 chr3 143250516 143250568 -16349215 + (CA)n Simple_repeat Simple_repeat 2 53 0 3 1677 186 294 88 0 chr3 143251742 143251810 -16347973 - MIRm SINE MIR 0 276 203 3 1677 184 318 32 0 chr3 143254102 143254165 -16345618 - L2b LINE L2 -1 3374 3310 3 1677 449 265 24 42 chr3 143255476 143255615 -16344168 + B4A SINE B4 150 292 0 3 1677 284 148 16 0 chr3 143255680 143255741 -16344042 + (CA)n Simple_repeat Simple_repeat 1 62 0 3 1677 366 23 0 0 chr3 143255824 143255867 -16343916 + (CA)n Simple_repeat Simple_repeat 1 43 0 3 1677 957 273 15 83 chr3 143255915 143256283 -16343500 + ORR1E LTR MaLR 3 368 -11 3 1677 333 0 0 0 chr3 143258076 143258113 -16341670 + (CA)n Simple_repeat Simple_repeat 1 37 0 3 1677 240 143 0 0 chr3 143258122 143258164 -16341619 + (TG)n Simple_repeat Simple_repeat 1 42 0 3 1677 241 340 0 30 chr3 143259201 143259301 -16340482 + CT-rich Low_complexity Low_complexity 5 101 0 3 1677 206 308 0 0 chr3 143261316 143261368 -16338415 + GA-rich Low_complexity Low_complexity 4 55 0 3 209 245 356 58 0 chr3 143261653 143261757 -16338026 + MER5B DNA MER1_type 63 172 -6 3 1678 321 296 0 0 chr3 143264611 143264693 -16335090 + ID4 SINE ID 7 88 -64 3 1678 204 97 0 0 chr3 143265627 143265658 -16334125 + (A)n Simple_repeat Simple_repeat 1 31 0 3 1678 375 329 76 87 chr3 143266067 143266526 -16333257 + L2c LINE L2 2933 3386 -1 3 1678 1034 106 0 27 chr3 143268746 143268931 -16330852 + (GGAGA)n Simple_repeat Simple_repeat 1 180 0 3 1678 216 97 0 0 chr3 143268934 143268965 -16330818 + (GGGGA)n Simple_repeat Simple_repeat 3 33 0 3 1678 213 121 0 0 chr3 143269458 143269491 -16330292 + (ATG)n Simple_repeat Simple_repeat 3 35 0 3 1678 363 285 90 7 chr3 143269545 143269690 -16330093 - MER112 DNA MER1_type -102 159 3 3 1678 353 234 73 21 chr3 143270207 143270303 -16329480 - MIRc SINE MIR -13 255 155 3 1678 277 227 174 10 chr3 143270604 143270702 -16329081 + MIRb SINE MIR 35 148 -120 3 1678 203 256 63 13 chr3 143271481 143271560 -16328223 + MIR SINE MIR 108 190 -72 3 1678 1375 288 45 36 chr3 143274243 143275212 -16324571 + Lx6 LINE L1 6176 7320 -140 3 1678 2557 102 7 5 chr3 143275868 143276280 -16323503 + MTB-int LTR MaLR 686 1098 0 3 1678 3390 48 5 0 chr3 143276280 143276678 -16323105 + MTB LTR MaLR 1 400 0 3 1678 235 254 0 43 chr3 143278855 143278925 -16320858 + CT-rich Low_complexity Low_complexity 5 71 0 3 1678 267 284 90 0 chr3 143279014 143279081 -16320702 + B3A SINE B2 84 156 -42 3 1678 273 289 58 50 chr3 143280227 143280347 -16319436 + L2b LINE L2 3254 3374 -1 3 1678 1431 265 33 14 chr3 143282323 143282690 -16317093 - MTEa LTR MaLR -5 374 1 3 1678 790 304 54 18 chr3 143283239 143283517 -16316266 - B4 SINE B4 0 292 5 3 1678 349 167 0 0 chr3 143285982 143286036 -16313747 - BLACKJACK DNA AcHobo -2890 54 1 3 1678 302 287 30 37 chr3 143286142 143286295 -16313488 - MIRm SINE MIR -102 174 22 3 1678 21 0 0 0 chr3 143287069 143287090 -16312693 + AT_rich Low_complexity Low_complexity 1 21 0 3 1678 201 74 0 0 chr3 143288556 143288583 -16311200 + (TG)n Simple_repeat Simple_repeat 2 28 0 3 1678 258 348 28 107 chr3 143288624 143288801 -16310982 - B4A SINE B4 -22 270 108 3 1678 22 0 0 0 chr3 143289588 143289610 -16310173 + AT_rich Low_complexity Low_complexity 1 22 0 3 1678 434 325 12 59 chr3 143289954 143290124 -16309659 + RSINE1 SINE B4 4 165 0 3 1678 926 180 74 114 chr3 143290475 143290706 -16309077 + RLTR11A2 LTR ERVK 1 208 -319 3 1678 294 238 26 87 chr3 143290840 143290955 -16308828 - MLT1C LTR MaLR -26 441 334 3 1678 226 318 0 0 chr3 143290967 143291030 -16308753 + GA-rich Low_complexity Low_complexity 2 64 0 3 1678 30 69 0 0 chr3 143291724 143291782 -16308001 + AT_rich Low_complexity Low_complexity 1 58 0 3 1678 405 0 0 0 chr3 143292130 143292175 -16307608 + (TC)n Simple_repeat Simple_repeat 2 46 0 3 1678 579 295 35 7 chr3 143292352 143292531 -16307252 - B3A SINE B2 -1 215 22 3 1678 250 338 101 55 chr3 143292759 143292978 -16306805 - MIR SINE MIR -25 237 9 3 1678 278 337 35 52 chr3 143294304 143294476 -16305307 + LFSINE_Vert SINE SINE 282 450 -9 3 1678 279 0 0 0 chr3 143295187 143295218 -16304565 + (TG)n Simple_repeat Simple_repeat 2 32 0 3 1678 658 320 90 43 chr3 143295253 143295531 -16304252 - B4 SINE B4 0 292 2 3 1678 558 0 0 0 chr3 143296970 143297032 -16302751 + (TA)n Simple_repeat Simple_repeat 2 63 0 3 1678 246 320 0 13 chr3 143297409 143297485 -16302298 + ID4_ SINE ID 5 79 -4 3 1678 637 309 21 47 chr3 143297501 143297691 -16302092 + B3 SINE B2 5 189 -27 3 1678 463 204 76 116 chr3 143297719 143297891 -16301892 + RSINE1 SINE B4 1 165 0 3 1678 309 245 53 0 chr3 143298060 143298211 -16301572 + L1M4b LINE L1 1582 1740 -5594 3 1678 315 268 99 30 chr3 143298213 143298344 -16301439 + L1M4b LINE L1 4473 4612 -2394 3 1678 228 352 88 53 chr3 143298372 143298543 -16301240 - ORR1E LTR MaLR -111 248 72 3 1678 258 333 30 30 chr3 143298679 143298778 -16301005 + ORR1E LTR MaLR 2 100 -259 3 1678 532 315 139 26 chr3 143298818 143299199 -16300584 + L1M4b LINE L1 5001 5424 -1582 3 1678 404 354 108 0 chr3 143299219 143299377 -16300406 + MTE2b LTR MaLR 91 265 -114 3 1678 829 293 93 4 chr3 143301106 143301353 -16298430 - B4A SINE B4 0 292 24 3 1678 3903 129 39 16 chr3 143301483 143302130 -16297653 - Lx LINE L1 -3 6651 5990 3 1678 842 260 172 54 chr3 143302525 143302879 -16296904 + MTD LTR MaLR 10 405 -14 3 1678 328 284 65 6 chr3 143304652 143304822 -16294961 + MER53 DNA hAT 1 180 -13 3 1678 253 286 16 0 chr3 143305741 143305804 -16293979 + MLT1D LTR MaLR 89 152 -353 3 1678 786 226 126 22 chr3 143305825 143306056 -16293727 - ORR1D2 LTR MaLR 0 370 116 3 1678 287 394 38 53 chr3 143306042 143306305 -16293478 + MLT1D LTR MaLR 171 429 -76 3 1678 708 296 100 0 chr3 143306415 143306655 -16293128 + B4A SINE B4 8 271 -21 3 1678 365 95 16 0 chr3 143306660 143306723 -16293060 + (CA)n Simple_repeat Simple_repeat 1 64 0 3 1678 338 272 79 22 chr3 143307082 143307221 -16292562 + L2a LINE L2 3278 3424 -2 3 1678 378 0 0 0 chr3 143310257 143310299 -16289484 + (TG)n Simple_repeat Simple_repeat 1 42 0 3 1678 549 0 0 0 chr3 143310299 143310359 -16289424 + (GA)n Simple_repeat Simple_repeat 1 61 0 3 1678 454 237 47 121 chr3 143310419 143310568 -16289215 - B1_Mur1 SINE Alu 0 149 12 3 1678 2179 180 104 35 chr3 143310568 143311114 -16288669 - RLTR31A_Mm LTR ERVK 0 584 1 3 1678 641 342 15 10 chr3 143311135 143311333 -16288450 - B4A SINE B4 -89 203 5 3 1678 289 41 82 0 chr3 143312537 143312586 -16287197 + (CATATA)n Simple_repeat Simple_repeat 4 56 0 3 1678 196 325 62 0 chr3 143312691 143312771 -16287012 - MIRc SINE MIR -66 202 118 3 1678 320 343 27 18 chr3 143312921 143313031 -16286752 + MER115 DNA Tip100 29 139 -554 3 1678 395 286 118 15 chr3 143315692 143315827 -16283956 - MIRb SINE MIR -112 156 8 3 1678 725 267 121 17 chr3 143315883 143316123 -16283660 + B4A SINE B4 1 265 -27 3 1678 414 0 0 0 chr3 143316147 143316193 -16283590 + (CA)n Simple_repeat Simple_repeat 2 47 0 3 1678 409 307 7 35 chr3 143317660 143317802 -16281981 + ID_B1 SINE B4 84 221 -3 3 1678 22 0 0 0 chr3 143317820 143317842 -16281941 + AT_rich Low_complexity Low_complexity 1 22 0 3 1678 237 222 37 0 chr3 143318218 143318272 -16281511 - MARNA DNA Mariner -522 64 9 3 1678 282 323 51 51 chr3 143319023 143319160 -16280623 + MIR SINE MIR 90 226 -36 3 1678 459 52 0 0 chr3 143319827 143319885 -16279898 + (TG)n Simple_repeat Simple_repeat 2 59 0 3 1678 541 320 67 59 chr3 143320810 143321215 -16278568 + Charlie7 DNA MER1_type 278 685 -1927 3 1678 482 385 38 19 chr3 143323620 143323882 -16275901 - B4A SINE B4 -23 269 3 3 1678 1049 75 8 0 chr3 143324366 143324500 -16275283 + B1_Mm SINE Alu 1 135 -12 3 1678 651 168 0 0 chr3 143324517 143324636 -16275147 + GA-rich Low_complexity Low_complexity 2 120 0 3 1678 704 43 11 0 chr3 143324938 143325030 -16274753 + (TC)n Simple_repeat Simple_repeat 1 93 0 3 1678 354 236 9 86 chr3 143325861 143325977 -16273806 - HAL1-2a_MD LINE L1 -571 2453 2347 3 1678 461 278 6 53 chr3 143325961 143326132 -16273651 - HAL1-2a_MD LINE L1 -517 2507 2345 3 1678 190 206 32 0 chr3 143326167 143326230 -16273553 + (ATG)n Simple_repeat Simple_repeat 1 65 0 4 1678 195 338 93 40 chr3 143328379 143328530 -16271253 - MIRb SINE MIR -59 209 51 4 1678 300 269 45 96 chr3 143328570 143328747 -16271036 - Tigger7 DNA MER2_type 0 2491 2324 4 1678 225 0 0 0 chr3 143328766 143328791 -16270992 + (TC)n Simple_repeat Simple_repeat 1 25 0 4 1678 477 0 0 0 chr3 143330107 143330160 -16269623 + (TG)n Simple_repeat Simple_repeat 1 53 0 4 1678 626 299 76 40 chr3 143330207 143330482 -16269301 - B4A SINE B4 -4 288 4 4 1678 6369 53 2 6 chr3 143331676 143332488 -16267295 - L1Md_F2 LINE L1 -1 6581 5773 4 1678 336 341 12 24 chr3 143332724 143332892 -16266891 + GA-rich Low_complexity Low_complexity 6 171 0 4 1678 438 20 0 0 chr3 143332978 143333029 -16266754 + (TG)n Simple_repeat Simple_repeat 1 51 0 4 1678 657 96 0 0 chr3 143333032 143333126 -16266657 + (TAGA)n Simple_repeat Simple_repeat 2 95 0 4 1678 190 182 0 0 chr3 143333169 143333202 -16266581 + L2c LINE L2 3338 3370 -17 4 1678 273 318 75 0 chr3 143333496 143333603 -16266180 - MIR SINE MIR -7 255 141 4 1678 633 27 0 0 chr3 143333772 143333847 -16265936 + (GA)n Simple_repeat Simple_repeat 2 76 0 4 1678 206 276 9 117 chr3 143334214 143334325 -16265458 - L3 LINE CR1 -3681 808 710 4 1678 21 36 0 0 chr3 143336066 143336094 -16263689 + AT_rich Low_complexity Low_complexity 1 28 0 4 1678 545 313 27 16 chr3 143336098 143336283 -16263500 - B3A SINE B2 -10 188 2 4 1678 562 337 89 15 chr3 143336675 143336934 -16262849 + RMER15 LTR ERVL 296 573 -2 4 1678 664 277 100 64 chr3 143337069 143337289 -16262494 - B4A SINE B4 -26 266 39 4 1678 238 186 47 0 chr3 143337320 143337363 -16262420 + MLT1A1 LTR MaLR 364 408 0 4 1678 254 209 0 0 chr3 143338055 143338098 -16261685 + B3A SINE B2 1 43 -155 4 1678 782 224 69 50 chr3 143338172 143338374 -16261409 + B3 SINE B2 10 215 -1 4 1678 876 223 38 28 chr3 143338393 143338605 -16261178 + B3 SINE B2 3 216 0 4 1678 212 333 0 45 chr3 143338786 143338852 -16260931 + L2b LINE L2 3308 3370 -5 4 1678 252 0 0 0 chr3 143340108 143340136 -16259647 + (CAAT)n Simple_repeat Simple_repeat 4 31 0 4 1678 8156 33 5 1 chr3 143340160 143341129 -16258654 + L1Md_T LINE L1 5609 6581 -1 4 1678 255 189 0 0 chr3 143341556 143341609 -16258174 + GA-rich Low_complexity Low_complexity 3 55 0 4 1678 27 29 0 0 chr3 143341892 143341926 -16257857 + AT_rich Low_complexity Low_complexity 1 34 0 4 1678 495 222 111 0 chr3 143342252 143342360 -16257423 + B4A SINE B4 165 284 -8 4 1678 325 163 11 11 chr3 143342401 143342494 -16257289 + GA-rich Low_complexity Low_complexity 2 94 0 4 1678 252 0 0 0 chr3 143342663 143342691 -16257092 + (T)n Simple_repeat Simple_repeat 1 28 0 4 1678 811 176 144 10 chr3 143342776 143342971 -16256812 + URR1A DNA MER1_type 2 222 -4 4 1678 249 317 23 47 chr3 143342976 143343148 -16256635 - Lx7 LINE L1 -1984 5712 5511 4 1678 311 310 75 24 chr3 143343675 143344006 -16255777 - L1MEf LINE L1 -2712 3607 3260 4 1678 246 333 0 80 chr3 143344036 143344124 -16255659 - ID_B1 SINE B4 -57 167 87 4 1678 368 309 0 0 chr3 143344047 143344128 -16255655 - B1F SINE Alu -67 82 2 4 1678 267 236 82 82 chr3 143344224 143344280 -16255503 - L1MEf LINE L1 -3155 3164 3112 4 1678 2055 119 10 6 chr3 143344280 143344592 -16255191 - Lx3B LINE L1 0 6973 6661 4 1678 267 236 82 82 chr3 143344592 143344743 -16255040 - L1MEf LINE L1 -3208 3111 2957 4 1678 491 267 55 43 chr3 143345041 143345386 -16254397 - L1MEf LINE L1 -3935 2465 2117 4 1678 280 310 58 39 chr3 143345503 143345607 -16254176 - B1_Mus1 SINE Alu -32 116 11 4 1678 1808 157 83 3 chr3 143345722 143346047 -16253736 + ORR1B2 LTR MaLR 3 353 -14 4 1678 221 290 0 92 chr3 143346268 143346344 -16253439 - ID_B1 SINE B4 -132 92 24 4 1678 210 328 0 0 chr3 143346294 143346361 -16253422 - ID4 SINE ID -11 72 6 4 1678 507 320 93 43 chr3 143346616 143346894 -16252889 + MLT2B2 LTR ERVL 224 515 0 4 1678 306 80 65 54 chr3 143347504 143347597 -16252186 + (TCTCTG)n Simple_repeat Simple_repeat 1 94 0 4 1678 435 19 0 0 chr3 143347598 143347650 -16252133 + (TG)n Simple_repeat Simple_repeat 2 53 0 4 1678 266 243 40 13 chr3 143350606 143350681 -16249102 - MIR3 SINE MIR -8 200 124 4 1678 223 123 17 34 chr3 143350784 143350843 -16248940 + T-rich Low_complexity Low_complexity 2 59 0 4 1678 804 208 0 0 chr3 143350851 143350995 -16248788 - B1F2 SINE Alu -5 144 1 4 1678 2075 228 65 29 chr3 143353268 143354320 -16245463 - L1MC1 LINE L1 -1807 5978 4921 4 1678 263 311 87 32 chr3 143354340 143354466 -16245317 + MLT1E2 LTR MaLR 527 627 0 4 1678 209 277 34 67 chr3 143354466 143354555 -16245228 + MIRb SINE MIR 156 241 -27 4 1678 189 261 22 0 chr3 143355408 143355454 -16244329 - L2a LINE L2 -17 3409 3363 4 1678 242 33 0 0 chr3 143355981 143356011 -16243772 - U6 snRNA snRNA -77 30 1 4 1678 1091 276 72 43 chr3 143357799 143358153 -16241630 + ORR1E LTR MaLR 1 419 0 4 1678 252 0 0 0 chr3 143358566 143358594 -16241189 + (TTG)n Simple_repeat Simple_repeat 2 29 0 4 1678 236 255 0 0 chr3 143359112 143359163 -16240620 + RMER30 DNA MER1_type 1 51 -151 4 1678 207 0 0 0 chr3 143359485 143359508 -16240275 + (TTG)n Simple_repeat Simple_repeat 2 24 0 4 1678 180 111 0 0 chr3 143360100 143360127 -16239656 + (A)n Simple_repeat Simple_repeat 1 27 0 4 1678 313 111 35 44 chr3 143360565 143360678 -16239105 + (CAAA)n Simple_repeat Simple_repeat 2 113 0 4 1678 406 383 74 50 chr3 143361727 143362227 -16237556 - L1ME1 LINE L1 -39 6140 5629 4 1678 567 310 176 57 chr3 143362346 143363137 -16236646 - L1ME1 LINE L1 -759 5420 4492 4 1678 487 271 0 33 chr3 143363177 143363299 -16236484 - PB1D7 SINE Alu -1 119 2 4 1678 21 0 0 0 chr3 143363301 143363322 -16236461 + AT_rich Low_complexity Low_complexity 1 21 0 4 1678 278 301 43 12 chr3 143363531 143363790 -16235993 - L1ME1 LINE L1 -2016 4130 3855 4 1678 396 165 0 0 chr3 143364062 143364153 -16235630 + T-rich Low_complexity Low_complexity 1 91 0 4 1678 1158 68 7 0 chr3 143364155 143364301 -16235482 - B1_Mus2 SINE Alu 0 147 1 4 1678 381 285 192 15 chr3 143364376 143364665 -16235118 - L1ME1 LINE L1 -2820 3326 2997 4 1678 371 340 115 25 chr3 143364820 143365106 -16234677 + L2a LINE L2 2973 3284 -142 4 1678 314 300 56 28 chr3 143365354 143365498 -16234285 - B4A SINE B4 -23 269 122 4 1678 400 255 118 0 chr3 143365505 143365607 -16234176 - PB1D10 SINE Alu 0 117 4 4 1678 238 333 117 11 chr3 143365526 143365620 -16234163 - ID_B1 SINE B4 -48 176 73 4 1678 1310 111 5 24 chr3 143365655 143365868 -16233915 + Lx2 LINE L1 6789 6997 0 4 1678 271 224 118 0 chr3 143366263 143366339 -16233444 - MIRb SINE MIR -73 195 111 4 1678 852 226 36 40 chr3 143366456 143366705 -16233078 + Tigger15a DNA TcMar 364 611 -104 4 1678 423 0 0 0 chr3 143366813 143366860 -16232923 + (CA)n Simple_repeat Simple_repeat 1 47 0 4 1678 467 333 114 12 chr3 143367769 143368024 -16231759 + B4 SINE B4 1 281 -11 4 1678 307 288 73 27 chr3 143368208 143368358 -16231425 + L1MB5 LINE L1 6008 6164 -10 4 1678 1067 248 86 15 chr3 143368592 143368919 -16230864 - ORR1E LTR MaLR -5 354 5 4 1678 190 331 107 30 chr3 143369400 143369531 -16230252 - MER5A DNA MER1_type -44 145 5 4 1678 190 328 161 17 chr3 143369695 143369875 -16229908 + L3 LINE CR1 4283 4488 -1 4 1678 1377 306 81 26 chr3 143370639 143371343 -16228440 + Lx8 LINE L1 6435 7177 -296 4 1678 259 341 0 62 chr3 143371368 143371465 -16228318 + RMER15 LTR ERVL 371 461 -114 4 1678 6265 36 0 0 chr3 143371519 143372261 -16227522 - L1Md_T LINE L1 0 6582 5841 4 1678 1301 99 0 15 chr3 143372632 143372827 -16226956 + B2_Mm2 SINE B2 2 193 -2 4 1678 225 0 0 0 chr3 143374171 143374196 -16225587 + (A)n Simple_repeat Simple_repeat 1 25 0 4 1678 453 185 10 42 chr3 143375408 143375504 -16224279 - LTR81A LTR ERV1? -1193 157 65 4 1678 363 23 0 0 chr3 143376853 143376897 -16222886 + (CA)n Simple_repeat Simple_repeat 2 45 0 4 1678 648 287 52 98 chr3 143376897 143377090 -16222693 - B3A SINE B2 -11 184 1 4 1678 781 284 113 64 chr3 143377519 143377915 -16221868 + MTE2a LTR MaLR 3 419 0 4 1678 231 279 0 29 chr3 143377951 143378021 -16221762 + MLT1A1 LTR MaLR 337 404 -4 4 1678 432 0 0 0 chr3 143378055 143378103 -16221680 + (TC)n Simple_repeat Simple_repeat 1 48 0 4 1678 1125 108 0 0 chr3 143378277 143378444 -16221339 + (TCTCC)n Simple_repeat Simple_repeat 3 169 0 4 1678 1744 210 36 29 chr3 143378575 143378991 -16220792 - MTD LTR MaLR 0 419 1 4 1678 913 316 36 104 chr3 143378995 143379380 -16220403 - MTE2a LTR MaLR -10 369 11 4 1678 355 278 19 35 chr3 143379402 143379695 -16220088 + CT-rich Low_complexity Low_complexity 1 288 0 4 1678 22 0 0 0 chr3 143381383 143381405 -16218378 + AT_rich Low_complexity Low_complexity 1 22 0 4 1678 381 70 0 0 chr3 143382221 143382278 -16217505 + (CA)n Simple_repeat Simple_repeat 1 57 0 4 1678 189 0 0 0 chr3 143382948 143382969 -16216814 + (TG)n Simple_repeat Simple_repeat 2 22 0 4 1678 251 236 0 0 chr3 143382972 143383027 -16216756 + (TA)n Simple_repeat Simple_repeat 2 56 0 4 1678 318 316 112 70 chr3 143383054 143383158 -16216625 - MER2 DNA MER2_type 0 345 240 4 1678 414 0 0 0 chr3 143383158 143383204 -16216579 + (TG)n Simple_repeat Simple_repeat 2 47 0 4 1678 318 316 112 70 chr3 143383204 143383286 -16216497 - MER2 DNA MER2_type -106 239 152 4 1678 203 0 0 36 chr3 143383309 143383337 -16216446 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 4 1678 475 277 47 54 chr3 143384542 143384691 -16215092 + B1F SINE Alu 1 148 -1 4 1678 181 150 0 91 chr3 143385795 143385839 -16213944 + L4 LINE RTE 622 661 -1368 4 1678 196 339 31 31 chr3 143387379 143387507 -16212276 + L2a LINE L2 3268 3395 -31 4 1678 409 265 34 68 chr3 143387511 143387657 -16212126 + ORR1E LTR MaLR 1 141 -218 5 1678 2183 30 22 4 chr3 143387686 143387958 -16211825 + L1Md_F3 LINE L1 6307 6583 -1 5 1678 529 250 64 59 chr3 143388006 143388193 -16211590 + ORR1E LTR MaLR 169 356 -3 5 1678 2563 287 79 27 chr3 143388571 143389624 -16210159 + Lx9 LINE L1 6359 7466 -178 5 1678 1418 5 21 5 chr3 143389645 143390028 -16209755 + (TAGA)n Simple_repeat Simple_repeat 1 389 0 5 1678 262 268 44 127 chr3 143390224 143390429 -16209354 + MER53 DNA hAT 6 193 0 5 1678 276 30 0 0 chr3 143390922 143390955 -16208828 + (TA)n Simple_repeat Simple_repeat 1 33 0 5 1678 723 296 37 18 chr3 143391600 143391817 -16207966 + MER2 DNA MER2_type 125 345 0 5 1678 678 133 0 0 chr3 143392353 143392466 -16207317 + (TTTA)n Simple_repeat Simple_repeat 4 116 0 5 1679 24 32 0 0 chr3 143392875 143392906 -16206877 + AT_rich Low_complexity Low_complexity 1 31 0 5 1679 38 39 0 0 chr3 143394571 143394623 -16205160 + AT_rich Low_complexity Low_complexity 1 52 0 5 1679 454 237 91 8 chr3 143394675 143394807 -16204976 - B1_Mur3 SINE Alu -6 143 1 5 1679 260 326 0 10 chr3 143395590 143395686 -16204097 + MLT1C LTR MaLR 333 427 -40 5 1679 185 300 48 48 chr3 143395774 143395879 -16203904 - L2a LINE L2 -4 3422 3318 5 1679 555 287 70 0 chr3 143396958 143397101 -16202682 - RSINE1 SINE B4 -11 154 2 5 1679 306 329 71 58 chr3 143397118 143397273 -16202510 - B4A SINE B4 -134 158 2 5 1679 337 295 19 129 chr3 143397725 143398084 -16201699 - L2c LINE L2 -23 3352 3058 5 1679 651 37 0 0 chr3 143398087 143398169 -16201614 + (GAAA)n Simple_repeat Simple_repeat 4 85 0 5 1679 1374 57 0 0 chr3 143398180 143398356 -16201427 + (GAAA)n Simple_repeat Simple_repeat 3 178 0 5 1679 348 269 0 0 chr3 143398383 143398461 -16201322 - PB1D10 SINE Alu -7 110 33 5 1679 584 274 69 10 chr3 143398497 143398700 -16201083 - B3 SINE B2 -1 215 1 5 1679 1034 219 130 18 chr3 143398756 143399095 -16200688 + Lx8 LINE L1 7072 7448 -25 5 1679 26 0 0 0 chr3 143400792 143400818 -16198965 + AT_rich Low_complexity Low_complexity 1 26 0 5 1679 21 0 0 0 chr3 143401367 143401388 -16198395 + AT_rich Low_complexity Low_complexity 1 21 0 5 1679 210 217 0 0 chr3 143402950 143403019 -16196764 + (TA)n Simple_repeat Simple_repeat 2 70 0 5 1679 358 326 79 17 chr3 143403097 143403275 -16196508 + L1MEd LINE L1 931 1119 -5000 5 1679 271 216 50 40 chr3 143403355 143403456 -16196327 + L1MEd LINE L1 1279 1380 -4845 5 1679 414 0 0 0 chr3 143403700 143403746 -16196037 + (CA)n Simple_repeat Simple_repeat 1 46 0 5 1679 29 28 0 0 chr3 143404236 143404272 -16195511 + AT_rich Low_complexity Low_complexity 1 36 0 5 1679 248 186 17 0 chr3 143404279 143404338 -16195445 + (TG)n Simple_repeat Simple_repeat 2 61 0 5 1679 556 323 40 65 chr3 143404395 143404673 -16195110 - B4A SINE B4 -21 271 1 5 1679 291 376 11 24 chr3 143405265 143405422 -16194361 + MIRc SINE MIR 31 187 -75 5 1679 264 30 0 0 chr3 143407066 143407099 -16192684 + (TTTTTG)n Simple_repeat Simple_repeat 4 36 0 5 1679 458 337 0 14 chr3 143408838 143409049 -16190734 + ERVL-B4-int LTR ERVL 4173 4380 -1334 5 1679 1965 134 149 0 chr3 143409199 143409542 -16190241 - ORR1B1 LTR MaLR 0 394 1 5 1679 272 286 0 0 chr3 143409643 143409713 -16190070 + ERVL-B4-int LTR ERVL 4676 4745 -969 5 1679 283 304 65 0 chr3 143409840 143409978 -16189805 + ERVL-B4-int LTR ERVL 5150 5296 -418 5 1679 309 250 80 8 chr3 143410166 143410291 -16189492 + ERVL-B4-int LTR ERVL 5531 5664 -50 5 1679 330 261 38 92 chr3 143410314 143410445 -16189338 + MLT1E3 LTR MaLR 56 179 -445 5 1679 467 279 53 24 chr3 143410349 143410518 -16189265 + MLT2C1 LTR ERVL 69 242 -155 5 1679 420 20 0 0 chr3 143410628 143410677 -16189106 + (TG)n Simple_repeat Simple_repeat 1 49 0 5 1679 432 299 0 0 chr3 143410944 143411031 -16188752 + PB1D7 SINE Alu 26 112 -8 5 1679 318 317 94 22 chr3 143411600 143411713 -16188070 + B1F1 SINE Alu 4 123 -26 5 1679 497 189 101 34 chr3 143413485 143413633 -16186150 + MER121 Unknown Unknown 149 306 -106 5 1679 731 50 0 20 chr3 143415146 143415247 -16184536 + (TAGA)n Simple_repeat Simple_repeat 3 101 0 5 1679 705 298 28 42 chr3 143415702 143415916 -16183867 - B3A SINE B2 0 216 6 5 1679 519 273 46 15 chr3 143417281 143417411 -16182372 - RSINE1 SINE B4 -29 136 3 5 1679 513 47 0 0 chr3 143417757 143417821 -16181962 + (TG)n Simple_repeat Simple_repeat 2 65 0 5 1679 250 307 108 14 chr3 143418302 143418441 -16181342 + MIR SINE MIR 71 222 -40 5 1679 953 285 16 82 chr3 143421874 143421945 -16177838 - B4 SINE B4 -4 288 226 5 1679 302 0 0 26 chr3 143421945 143421984 -16177799 + (TTA)n Simple_repeat Simple_repeat 2 39 0 5 1679 953 285 16 82 chr3 143421984 143422218 -16177565 - B4 SINE B4 -67 225 3 5 1679 291 289 123 25 chr3 143425460 143425623 -16174160 - B3A SINE B2 -18 180 2 5 1679 278 237 23 126 chr3 143426115 143426202 -16173581 - L2c LINE L2 -6 3381 3304 5 1679 183 176 0 0 chr3 143426534 143426568 -16173215 + L2 LINE L2 1774 1807 -1612 5 1679 345 351 26 33 chr3 143426572 143426725 -16173058 + RSINE1 SINE B4 11 162 -3 5 1679 411 171 0 0 chr3 143427168 143427244 -16172539 + T-rich Low_complexity Low_complexity 1 76 0 5 1679 390 21 0 0 chr3 143427296 143427343 -16172440 + (TG)n Simple_repeat Simple_repeat 1 47 0 5 1679 412 220 79 10 chr3 143427948 143428049 -16171734 - B3 SINE B2 -12 204 97 5 1679 405 0 0 0 chr3 143428285 143428330 -16171453 + (TA)n Simple_repeat Simple_repeat 1 45 0 5 1679 464 287 132 101 chr3 143429290 143429677 -16170106 - MLT1A1 LTR MaLR -8 400 2 5 1679 21 36 0 0 chr3 143430447 143430475 -16169308 + AT_rich Low_complexity Low_complexity 1 28 0 5 1679 237 283 0 0 chr3 143431987 143432040 -16167743 + (TG)n Simple_repeat Simple_repeat 1 53 0 5 1679 328 384 16 23 chr3 143432069 143432197 -16167586 - RSINE1 SINE B4 -22 143 17 5 1679 237 323 90 0 chr3 143432482 143432637 -16167146 - L1M5 LINE L1 -300 5864 5696 5 1679 315 148 34 0 chr3 143435344 143435432 -16164351 + CT-rich Low_complexity Low_complexity 2 92 0 5 1679 697 234 35 0 chr3 143435663 143435804 -16163979 - B1_Mur2 SINE Alu -1 148 3 5 1679 340 104 0 0 chr3 143435999 143436047 -16163736 - HAL1-3A_ME LINE L1 -835 2023 1976 5 1679 228 186 0 0 chr3 143436048 143436107 -16163676 + (TG)n Simple_repeat Simple_repeat 2 60 0 5 1679 255 374 13 103 chr3 143436110 143436265 -16163518 - RSINE1 SINE B4 0 165 25 5 1679 240 342 77 97 chr3 143436349 143436468 -16163315 - Charlie1 DNA MER1_type 0 2781 2655 5 1679 791 150 43 7 chr3 143436468 143436609 -16163174 + B1_Mur4 SINE Alu 4 149 -1 5 1679 240 342 77 97 chr3 143436609 143436677 -16163106 - Charlie1 DNA MER1_type -127 2654 2598 5 1679 571 349 75 39 chr3 143436677 143437038 -16162745 + MLT1A LTR MaLR 1 374 0 5 1679 378 381 54 20 chr3 143437296 143437591 -16162192 - L1MD LINE L1 -572 5602 5298 5 1679 464 337 84 47 chr3 143438046 143438659 -16161124 - L1MD LINE L1 -1376 4770 4124 5 1679 241 315 9 61 chr3 143438732 143438847 -16160936 + YREP_Mm Unknown Unknown 186 294 -1518 5 1679 269 263 32 127 chr3 143438914 143439071 -16160712 - L1MD LINE L1 -2106 4040 3899 5 1679 634 290 6 12 chr3 143439072 143439236 -16160547 - Tigger5 DNA MER2_type -2243 163 1 5 1679 363 23 0 0 chr3 143439613 143439657 -16160126 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 5 1679 199 388 78 0 chr3 143440172 143440275 -16159508 - L2b LINE L2 -2 3373 3263 5 1679 28 29 0 0 chr3 143440967 143441002 -16158781 + AT_rich Low_complexity Low_complexity 1 35 0 5 1679 23 33 0 0 chr3 143441128 143441158 -16158625 + AT_rich Low_complexity Low_complexity 1 30 0 5 1679 318 382 114 37 chr3 143441442 143441741 -16158042 - LTR16A LTR ERVL -14 437 116 5 1679 739 363 31 0 chr3 143442510 143442769 -16157014 + RCHARR1 DNA MER1_type 49 315 -659 5 1679 277 298 59 18 chr3 143442882 143443032 -16156751 - B4A SINE B4 -71 221 4 5 1679 432 0 0 0 chr3 143443131 143443179 -16156604 + (TCTA)n Simple_repeat Simple_repeat 3 50 0 5 1679 26 30 0 0 chr3 143443205 143443238 -16156545 + AT_rich Low_complexity Low_complexity 1 33 0 5 1679 198 0 0 0 chr3 143444436 143444458 -16155325 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 5 1679 28 79 0 0 chr3 143445817 143445880 -16153903 + AT_rich Low_complexity Low_complexity 1 63 0 5 1679 379 312 45 107 chr3 143446228 143446472 -16153311 - B4A SINE B4 -63 229 1 5 1679 208 352 8 0 chr3 143446807 143446935 -16152848 + (TA)n Simple_repeat Simple_repeat 2 130 0 5 1679 211 216 0 0 chr3 143446897 143446934 -16152849 + (CATA)n Simple_repeat Simple_repeat 4 40 0 5 1679 925 270 66 22 chr3 143447876 143448149 -16151634 + B4 SINE B4 2 286 -6 5 1679 447 73 0 0 chr3 143448173 143448241 -16151542 + (CAGAGA)n Simple_repeat Simple_repeat 6 73 0 5 1679 198 115 38 19 chr3 143448940 143448993 -16150790 + T-rich Low_complexity Low_complexity 2 55 0 5 1679 1739 107 32 0 chr3 143449174 143449427 -16150356 + L1_Mus3 LINE L1 6372 6632 -6 5 1679 488 279 73 0 chr3 143449499 143449678 -16150105 + Lx7 LINE L1 5678 5869 -1827 5 1679 27 73 0 0 chr3 143450323 143450378 -16149405 + AT_rich Low_complexity Low_complexity 1 55 0 5 1679 1106 150 27 22 chr3 143450451 143450635 -16149148 + B2_Mm2 SINE B2 3 187 -8 5 1679 360 191 0 0 chr3 143451544 143451638 -16148145 + (TG)n Simple_repeat Simple_repeat 2 95 0 5 1679 180 182 0 0 chr3 143452388 143452432 -16147351 + (TG)n Simple_repeat Simple_repeat 2 45 0 5 1679 21 0 0 0 chr3 143453818 143453839 -16145944 + AT_rich Low_complexity Low_complexity 1 21 0 5 1679 211 357 26 18 chr3 143455252 143455366 -16144417 + MIR SINE MIR 86 200 -62 5 1679 297 332 90 28 chr3 143455991 143456202 -16143581 - MIR SINE MIR -27 235 12 5 1679 903 118 19 6 chr3 143457049 143457211 -16142572 + (GAAA)n Simple_repeat Simple_repeat 3 166 0 5 1679 443 136 25 0 chr3 143457209 143457290 -16142493 + GA-rich Low_complexity Low_complexity 3 85 0 5 1679 429 70 0 0 chr3 143458964 143459021 -16140762 + (TTTTC)n Simple_repeat Simple_repeat 3 59 0 5 1679 235 323 63 24 chr3 143459759 143459886 -16139897 - MIRc SINE MIR -124 144 13 5 1679 644 193 0 6 chr3 143460343 143460356 -16139427 + (CA)n Simple_repeat Simple_repeat 2 14 0 5 1679 441 0 0 0 chr3 143460356 143460405 -16139378 + (TC)n Simple_repeat Simple_repeat 1 49 0 6 1679 644 193 0 6 chr3 143460405 143460563 -16139220 + (CA)n Simple_repeat Simple_repeat 1 157 0 6 1679 208 269 6 6 chr3 143460580 143460756 -16139027 + (CA)n Simple_repeat Simple_repeat 1 176 0 6 1679 196 213 21 0 chr3 143461424 143461471 -16138312 + L3 LINE CR1 744 791 -3698 6 1679 414 0 0 0 chr3 143462348 143462394 -16137389 + (TG)n Simple_repeat Simple_repeat 2 47 0 6 1679 587 273 60 73 chr3 143462456 143462552 -16137231 - B4 SINE B4 -60 232 130 6 1679 216 0 0 0 chr3 143462552 143462576 -16137207 + (CA)n Simple_repeat Simple_repeat 2 25 0 6 1679 587 273 60 73 chr3 143462576 143462712 -16137071 - B4 SINE B4 -163 129 3 6 1679 492 279 13 33 chr3 143464893 143465045 -16134738 + MLT2B4 LTR ERVL 1 149 -407 6 1679 491 269 44 22 chr3 143465108 143465245 -16134538 + RSINE1 SINE B4 2 141 -24 6 1679 189 195 0 0 chr3 143465436 143465477 -16134306 + CT-rich Low_complexity Low_complexity 2 42 0 6 1679 237 361 73 87 chr3 143465684 143465984 -16133799 - MLT1J LTR MaLR -7 505 210 6 1679 291 395 42 0 chr3 143466206 143466373 -16133410 + L2 LINE L2 2531 2704 -715 6 1679 356 0 23 0 chr3 143467379 143467423 -16132360 + (CA)n Simple_repeat Simple_repeat 2 46 0 6 1679 569 293 100 84 chr3 143467979 143468288 -16131495 - MTEa LTR MaLR -63 316 3 6 1679 288 0 0 0 chr3 143468414 143468446 -16131337 + (TC)n Simple_repeat Simple_repeat 1 32 0 6 1679 279 0 0 0 chr3 143468446 143468476 -16131307 + (CA)n Simple_repeat Simple_repeat 1 31 0 6 1679 365 319 104 24 chr3 143468617 143468829 -16130954 - MIRb SINE MIR 0 268 40 6 1679 434 146 12 0 chr3 143468976 143469058 -16130725 + CT-rich Low_complexity Low_complexity 1 83 0 6 1679 1688 49 0 5 chr3 143469134 143469339 -16130444 - L1Md_F2 LINE L1 -12 6570 6367 6 1679 470 281 44 83 chr3 143470435 143470687 -16129096 - MIR SINE MIR -19 243 2 6 1679 389 296 60 38 chr3 143470813 143470996 -16128787 + MIR3 SINE MIR 18 204 -4 6 1679 315 0 0 0 chr3 143471038 143471073 -16128710 + (TG)n Simple_repeat Simple_repeat 2 36 0 6 1679 494 308 73 49 chr3 143471639 143471844 -16127939 + B4A SINE B4 37 246 -46 6 1679 507 33 0 0 chr3 143471924 143471985 -16127798 + (CA)n Simple_repeat Simple_repeat 1 61 0 6 1679 414 0 0 0 chr3 143471990 143472036 -16127747 + (TAAA)n Simple_repeat Simple_repeat 2 47 0 6 1679 354 404 48 13 chr3 143472944 143473172 -16126611 + B4A SINE B4 39 274 -18 6 1679 400 292 163 20 chr3 143474454 143474699 -16125084 - B4 SINE B4 -11 281 2 6 1679 252 232 18 0 chr3 143475166 143475222 -16124561 + CT-rich Low_complexity Low_complexity 1 57 0 6 1679 1027 277 137 55 chr3 143476939 143477649 -16122134 + L1MB2 LINE L1 5353 6120 -51 6 1679 1059 37 0 0 chr3 143477892 143478028 -16121755 + (TG)n Simple_repeat Simple_repeat 2 137 0 6 1679 258 325 13 0 chr3 143479076 143479153 -16120630 - ID4_ SINE ID -4 79 2 6 1679 210 71 0 0 chr3 143479273 143479301 -16120482 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 6 1679 2498 255 36 17 chr3 143479567 143480145 -16119638 - Lx6 LINE L1 0 7460 6872 6 1679 2124 173 73 11 chr3 143480144 143480512 -16119271 + Lx6 LINE L1 6451 6841 -619 6 1679 855 182 58 6 chr3 143481586 143481757 -16118026 + ORR1D1 LTR MaLR 5 184 -190 6 1679 716 161 7 0 chr3 143481757 143481900 -16117883 + CT-rich Low_complexity Low_complexity 1 144 0 6 1679 226 257 53 26 chr3 143481902 143481978 -16117805 + ORR1D1 LTR MaLR 166 243 -131 6 1679 241 222 0 0 chr3 143482049 143482094 -16117689 + (TTAGGC)n Simple_repeat Simple_repeat 5 49 0 6 1679 249 263 167 50 chr3 143482222 143482342 -16117441 - MLT2B3 LTR ERVL -82 472 339 6 1679 272 303 65 8 chr3 143482403 143482526 -16117257 + L1MB1 LINE L1 6045 6174 -15 6 1679 2436 62 3 0 chr3 143482586 143483007 -16116776 + L1_Mus1 LINE L1 6271 6567 0 6 1679 479 256 62 25 chr3 143483153 143483313 -16116470 + Lx8 LINE L1 7115 7280 -193 6 1679 225 0 0 0 chr3 143483390 143483415 -16116368 + (TA)n Simple_repeat Simple_repeat 1 25 0 6 1679 246 314 149 28 chr3 143483684 143483825 -16115958 - LTR33 LTR ERVL -355 160 3 6 1679 327 270 100 11 chr3 143483949 143484039 -16115744 + MIRm SINE MIR 165 262 -14 6 1679 207 0 0 0 chr3 143484756 143484779 -16115004 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 6 1679 624 14 0 0 chr3 143485013 143485086 -16114697 + (TG)n Simple_repeat Simple_repeat 2 74 0 6 1679 184 250 42 0 chr3 143485176 143485224 -16114559 + L2 LINE L2 1472 1521 -1898 6 1679 201 333 104 9 chr3 143485202 143485317 -16114466 + MIRc SINE MIR 129 254 -14 6 1679 222 271 17 0 chr3 143486264 143486323 -16113460 + MIR SINE MIR 179 238 -24 6 1679 961 261 47 97 chr3 143488057 143488396 -16111387 - ORR1E LTR MaLR -2 357 36 6 1679 234 292 14 0 chr3 143488657 143488729 -16111054 + CT-rich Low_complexity Low_complexity 43 115 0 6 1679 962 247 88 70 chr3 143490834 143491222 -16108561 - L1MA4 LINE L1 -375 5925 5531 6 1679 186 43 0 0 chr3 143492058 143492081 -16107702 + (TTTTA)n Simple_repeat Simple_repeat 3 25 0 6 1679 924 178 0 0 chr3 143493568 143493748 -16106035 + GA-rich Low_complexity Low_complexity 1 180 0 6 1679 263 331 121 11 chr3 143494844 143495018 -16104765 + MIRb SINE MIR 63 255 -13 6 1679 246 365 46 9 chr3 143495651 143495759 -16104024 + MIRb SINE MIR 38 149 -119 6 1679 249 319 120 11 chr3 143495913 143496005 -16103778 + MLT1A0 LTR MaLR 24 125 -240 6 1679 297 0 0 0 chr3 143496467 143496500 -16103283 + (TA)n Simple_repeat Simple_repeat 2 34 0 6 1679 243 0 0 0 chr3 143496500 143496526 -16103257 + (TG)n Simple_repeat Simple_repeat 2 28 0 6 1679 201 277 15 30 chr3 143497222 143497289 -16102494 + MIR SINE MIR 114 179 -83 6 1679 513 0 0 0 chr3 143497395 143497452 -16102331 + (TCC)n Simple_repeat Simple_repeat 3 59 0 6 1679 303 275 50 0 chr3 143499887 143499967 -16099816 + B4A SINE B4 1 84 -208 6 1679 336 295 39 62 chr3 143500002 143500132 -16099651 + B4A SINE B4 139 265 -27 1 1679 314 270 14 0 chr3 143500185 143500259 -16099524 + HAL1-3A_ME LINE L1 1975 2049 -809 2 1679 1000 259 154 33 chr3 143500568 143501080 -16098703 - L1MC1 LINE L1 -436 5897 5324 3 1679 295 311 46 30 chr3 143501075 143501380 -16098403 - L1M5 LINE L1 -2467 3679 3370 4 1679 444 37 0 0 chr3 143501581 143501635 -16098148 + (TC)n Simple_repeat Simple_repeat 1 54 0 5 1679 7333 40 4 3 chr3 143501654 143502592 -16097191 - L1Md_F2 LINE L1 -2 6580 5642 6 1679 252 111 0 0 chr3 143502914 143502959 -16096824 + (TAA)n Simple_repeat Simple_repeat 1 45 0 7 1679 211 189 37 19 chr3 143503148 143503202 -16096581 + CT-rich Low_complexity Low_complexity 2 56 0 8 1679 516 16 0 0 chr3 143503203 143503264 -16096519 + (CA)n Simple_repeat Simple_repeat 2 62 0 9 1679 36411 41 13 16 chr3 143503729 143509563 -16090220 - L1Md_T LINE L1 0 6585 582 1 1679 229 316 59 59 chr3 143509563 143509664 -16090119 - RLTR45 LTR ERVK -378 104 4 1 1679 36411 41 13 16 chr3 143509664 143509962 -16089821 - L1Md_T LINE L1 0 581 274 1 1679 207 370 187 6 chr3 143510433 143510615 -16089168 - MIR SINE MIR -27 235 21 1 1679 1455 152 216 7 chr3 143511901 143512193 -16087590 + ORR1B2 LTR MaLR 6 358 -9 1 1679 324 346 44 7 chr3 143512958 143513095 -16086688 + B1F1 SINE Alu 1 142 -7 1 1679 348 322 39 39 chr3 143513701 143513882 -16085901 - L1M5 LINE L1 -2130 4016 3836 1 1679 433 274 54 93 chr3 143513893 143514098 -16085685 - B3A SINE B2 0 198 2 1 1679 441 372 28 7 chr3 143514100 143514384 -16085399 - L1M5 LINE L1 -2296 3850 3561 1 1679 31571 70 26 3 chr3 143514388 143520238 -16079545 - L1Md_F2 LINE L1 -1 6584 220 1 1679 489 375 91 14 chr3 143520243 143520749 -16079034 - L1M5 LINE L1 -2577 3569 3025 1 1679 474 242 61 0 chr3 143520797 143520896 -16078887 - PB1D10 SINE Alu -7 110 6 1 1679 502 326 65 45 chr3 143521012 143521211 -16078572 + ID_B1 SINE B4 2 204 -20 1 1679 423 0 0 0 chr3 143521621 143521668 -16078115 + (TG)n Simple_repeat Simple_repeat 2 48 0 2 1679 30 27 0 0 chr3 143521941 143521978 -16077805 + AT_rich Low_complexity Low_complexity 1 37 0 2 1679 31 58 0 0 chr3 143522766 143522818 -16076965 + AT_rich Low_complexity Low_complexity 1 52 0 2 1679 309 183 0 0 chr3 143523067 143523127 -16076656 + (CA)n Simple_repeat Simple_repeat 1 60 0 2 1680 229 306 97 48 chr3 143524433 143524598 -16075185 + MIRb SINE MIR 4 176 -92 2 1680 188 288 180 50 chr3 143524895 143525034 -16074749 + L2b LINE L2 3219 3375 0 2 1680 24 67 0 0 chr3 143526281 143526326 -16073457 + AT_rich Low_complexity Low_complexity 1 45 0 2 1680 249 83 0 0 chr3 143526535 143526571 -16073212 + (TTTTG)n Simple_repeat Simple_repeat 2 37 0 2 1680 507 17 0 0 chr3 143526707 143526767 -16073016 + (TG)n Simple_repeat Simple_repeat 2 61 0 2 1680 288 170 0 0 chr3 143527141 143527194 -16072589 + CT-rich Low_complexity Low_complexity 3 55 0 2 1680 369 58 0 0 chr3 143528380 143528432 -16071351 + (TATG)n Simple_repeat Simple_repeat 2 53 0 3 1680 451 310 46 46 chr3 143530261 143530457 -16069326 + MER3 DNA MER1_type 6 201 -8 3 1680 385 304 70 35 chr3 143530558 143530701 -16069082 - MER3 DNA MER1_type -38 171 24 3 1680 1069 282 80 36 chr3 143530808 143531220 -16068563 - MER57F LTR ERV1 -1 435 6 3 1680 192 343 104 68 chr3 143531224 143531446 -16068337 - L2c LINE L2 -42 3333 3104 3 1680 504 0 0 0 chr3 143531955 143532011 -16067772 + (TC)n Simple_repeat Simple_repeat 1 56 0 3 1680 234 0 0 0 chr3 143532011 143532037 -16067746 + (TG)n Simple_repeat Simple_repeat 2 27 0 3 1680 764 242 154 36 chr3 143532045 143532298 -16067485 - B4 SINE B4 -3 289 7 3 1680 609 320 120 42 chr3 143532344 143532677 -16067106 - MLT1A0 LTR MaLR -3 362 4 3 1680 476 179 0 19 chr3 143533502 143533610 -16066173 + GA-rich Low_complexity Low_complexity 3 108 0 3 1680 759 52 0 0 chr3 143533835 143533931 -16065852 + (TTC)n Simple_repeat Simple_repeat 1 96 0 4 1680 226 289 155 0 chr3 143533942 143534039 -16065744 - PB1D7 SINE Alu -8 112 1 4 1680 231 217 0 0 chr3 143534042 143534102 -16065681 + T-rich Low_complexity Low_complexity 3 62 0 4 1680 807 86 0 0 chr3 143534265 143534382 -16065401 + (GGGGA)n Simple_repeat Simple_repeat 4 120 0 4 1680 200 158 0 50 chr3 143535139 143535179 -16064604 + CT-rich Low_complexity Low_complexity 1 38 0 4 1680 459 52 0 0 chr3 143535387 143535445 -16064338 + (GGAA)n Simple_repeat Simple_repeat 1 58 0 4 1680 220 50 24 24 chr3 143535445 143535476 -16064307 + (GGGGA)n Simple_repeat Simple_repeat 3 34 0 4 1680 180 111 0 0 chr3 143535476 143535503 -16064280 + (CGAGG)n Simple_repeat Simple_repeat 1 27 0 4 1680 220 50 24 24 chr3 143535503 143535512 -16064271 + (GGGGA)n Simple_repeat Simple_repeat 5 12 0 4 1680 228 364 8 97 chr3 143535589 143535723 -16064060 + MER20 DNA MER1_type 29 150 -69 4 1680 1978 216 115 16 chr3 143536940 143537452 -16062331 + Lx5 LINE L1 6479 7041 -9 5 1680 634 186 7 7 chr3 143537452 143537598 -16062185 + GA-rich Low_complexity Low_complexity 1 146 0 5 1680 185 207 22 22 chr3 143537660 143537749 -16062034 + GA-rich Low_complexity Low_complexity 1 89 0 5 1680 5305 97 31 14 chr3 143537965 143538824 -16060959 + Lx2 LINE L1 5767 6640 -357 5 1680 1394 127 9 5 chr3 143538824 143539045 -16060738 + Lx2 LINE L1 6770 6991 -6 5 1680 236 276 83 68 chr3 143539770 143539902 -16059881 - ORR1E LTR MaLR -220 139 6 5 1680 236 333 146 26 chr3 143540185 143540258 -16059525 - RMER30 DNA MER1_type -27 175 82 5 1680 315 0 0 0 chr3 143540258 143540293 -16059490 + (CA)n Simple_repeat Simple_repeat 2 36 0 5 1680 236 333 146 26 chr3 143540293 143540370 -16059413 - RMER30 DNA MER1_type -121 81 7 5 1680 243 0 0 0 chr3 143540799 143540826 -16058957 + (TA)n Simple_repeat Simple_repeat 2 28 0 5 1680 582 261 94 0 chr3 143540880 143541018 -16058765 + MTE2b LTR MaLR 15 165 -214 5 1680 308 229 81 35 chr3 143541068 143541154 -16058629 + MTE2b LTR MaLR 269 358 -21 5 1680 333 118 0 0 chr3 143541156 143541207 -16058576 + (CA)n Simple_repeat Simple_repeat 1 51 0 5 1680 24 53 0 0 chr3 143541801 143541839 -16057944 + AT_rich Low_complexity Low_complexity 1 38 0 5 1680 593 259 153 27 chr3 143543508 143543691 -16056092 + B3 SINE B2 1 206 -10 6 1680 182 105 26 0 chr3 143543781 143543819 -16055964 + (CAAAAA)n Simple_repeat Simple_repeat 2 40 0 6 1680 329 312 21 146 chr3 143543912 143544145 -16055638 + L1M5 LINE L1 2454 2657 -3489 6 1680 2692 133 48 98 chr3 143544209 143544380 -16055403 + Lx2 LINE L1 6393 6561 -436 6 1680 1128 84 0 0 chr3 143544380 143544522 -16055261 + B1_Mus2 SINE Alu 1 142 -5 6 1680 2692 133 48 98 chr3 143544522 143544959 -16054824 + Lx2 LINE L1 6562 6970 -27 6 1680 1375 39 0 11 chr3 143544961 143545141 -16054642 + (GAA)n Simple_repeat Simple_repeat 2 179 0 6 1680 236 185 0 18 chr3 143545142 143545197 -16054586 + GA-rich Low_complexity Low_complexity 1 54 0 6 1680 2704 74 25 5 chr3 143545215 143545583 -16054200 - L1Md_F2 LINE L1 -13 6569 6195 6 1680 3165 44 10 3 chr3 143545624 143546015 -16053768 - MTA_Mm LTR MaLR 0 396 3 6 1680 30529 54 2 10 chr3 143546480 143550668 -16049115 + L1Md_F2 LINE L1 1433 5586 -297 6 1680 8098 48 0 3 chr3 143550668 143551659 -16048124 + L1Md_F2 LINE L1 5587 6574 -8 6 1680 660 362 20 111 chr3 143551787 143551928 -16047855 - MTEa LTR MaLR -12 367 233 7 1680 716 272 91 48 chr3 143551928 143552279 -16047504 - ORR1D2 LTR MaLR 0 370 5 7 1680 660 362 20 111 chr3 143552279 143552541 -16047242 - MTEa LTR MaLR -147 232 1 7 1680 2612 273 120 45 chr3 143552543 143553399 -16046384 - MTEa-int LTR MaLR -2 1578 649 7 1680 935 147 189 0 chr3 143553399 143553589 -16046194 - URR1A DNA MER1_type 0 226 1 7 1680 2612 273 120 45 chr3 143553589 143553710 -16046073 - MTEa-int LTR MaLR -932 648 528 7 1680 843 341 25 44 chr3 143554111 143554473 -16045310 - MTEa-int LTR MaLR -1022 558 204 7 1680 2721 87 19 22 chr3 143554477 143554887 -16044896 + BGLII LTR ERVK 1 409 -12 7 1680 751 278 26 5 chr3 143554902 143555097 -16044686 - MTEa-int LTR MaLR -1376 204 6 7 1680 317 59 0 38 chr3 143555097 143555150 -16044633 + (CATA)n Simple_repeat Simple_repeat 2 52 0 7 1680 1031 325 34 11 chr3 143555198 143555547 -16044236 - MTEa LTR MaLR -18 361 5 7 1680 921 274 62 88 chr3 143555718 143556106 -16043677 + MTEa LTR MaLR 2 379 0 7 1680 244 258 54 43 chr3 143556464 143556557 -16043226 - MLT1A LTR MaLR -1 373 280 7 1680 596 261 156 55 chr3 143556968 143557333 -16042450 + L1MC4 LINE L1 6910 7311 -731 7 1680 21 0 0 0 chr3 143557786 143557807 -16041976 + AT_rich Low_complexity Low_complexity 1 21 0 7 1680 229 293 13 0 chr3 143558705 143558780 -16041003 - MIR SINE MIR -95 167 92 7 1680 561 15 0 0 chr3 143559369 143559435 -16040348 + (GA)n Simple_repeat Simple_repeat 1 66 0 8 1680 205 380 28 21 chr3 143559676 143559821 -16039962 - MIRb SINE MIR -8 260 115 8 1680 872 221 37 37 chr3 143559889 143560105 -16039678 + B3 SINE B2 1 216 0 8 1680 528 324 105 55 chr3 143560162 143560591 -16039192 - MLT1D LTR MaLR -15 490 37 8 1680 288 0 0 0 chr3 143561640 143561672 -16038111 + (GA)n Simple_repeat Simple_repeat 1 32 0 8 1680 405 213 102 0 chr3 143564617 143564725 -16035058 + L1MA5 LINE L1 6175 6293 -7 8 1680 474 18 0 0 chr3 143565545 143565600 -16034183 + (TG)n Simple_repeat Simple_repeat 1 55 0 8 1680 830 294 0 56 chr3 143565703 143565934 -16033849 - B4 SINE B4 -72 220 3 8 1680 589 171 26 22 chr3 143565987 143566214 -16033569 + CT-rich Low_complexity Low_complexity 1 227 0 8 1680 228 35 0 0 chr3 143566392 143566421 -16033362 + (CAAA)n Simple_repeat Simple_repeat 4 32 0 8 1680 235 302 54 45 chr3 143566695 143566806 -16032977 - MIRc SINE MIR -148 120 9 9 1680 421 284 30 0 chr3 143567677 143567811 -16031972 + LTR79 LTR ERVL 388 525 -2 9 1680 893 279 107 37 chr3 143568119 143568473 -16031310 + MTEb LTR MaLR 1 379 0 9 1680 471 130 0 0 chr3 143568589 143568666 -16031117 + (TA)n Simple_repeat Simple_repeat 2 78 0 9 1680 658 161 10 23 chr3 143568757 143569064 -16030719 + (TG)n Simple_repeat Simple_repeat 1 302 0 9 1680 347 250 0 50 chr3 143569071 143569151 -16030632 - ID4 SINE ID -6 77 2 9 1680 295 266 113 17 chr3 143570341 143570456 -16029327 + B1F SINE Alu 23 148 -1 9 1680 315 267 43 71 chr3 143571111 143571252 -16028531 - MIRc SINE MIR -127 141 5 9 1680 262 224 72 29 chr3 143571394 143571463 -16028320 + MIRc SINE MIR 84 155 -113 9 1680 881 283 83 32 chr3 143571513 143571791 -16027992 + B4 SINE B4 1 292 0 9 1680 236 373 75 14 chr3 143572276 143572488 -16027295 - MIRc SINE MIR -17 251 27 1 1680 306 0 0 0 chr3 143573170 143573204 -16026579 + (TG)n Simple_repeat Simple_repeat 2 35 0 1 1680 1077 265 23 8 chr3 143573282 143573548 -16026235 - B4A SINE B4 -22 270 1 1 1680 510 17 0 0 chr3 143574554 143574613 -16025170 + (TA)n Simple_repeat Simple_repeat 1 59 0 1 1680 261 0 0 0 chr3 143574613 143574641 -16025142 + (GA)n Simple_repeat Simple_repeat 2 30 0 1 1680 212 115 45 76 chr3 143578366 143578432 -16021351 + T-rich Low_complexity Low_complexity 2 65 0 1 1680 1705 271 97 53 chr3 143580649 143581351 -16018432 - Lx8 LINE L1 -3 7470 6738 1 1680 740 306 45 4 chr3 143581819 143582065 -16017718 + Charlie1a DNA MER1_type 757 1012 -443 1 1680 539 246 141 20 chr3 143582124 143582373 -16017410 + Charlie1a DNA MER1_type 1169 1447 -8 1 1680 503 329 83 35 chr3 143582375 143582920 -16016863 - L1MEe LINE L1 -3068 3078 2508 1 1680 615 161 0 0 chr3 143582981 143583118 -16016665 + (TCTA)n Simple_repeat Simple_repeat 4 140 0 1 1680 182 198 36 24 chr3 143583135 143583218 -16016565 + (TATG)n Simple_repeat Simple_repeat 1 84 0 1 1680 708 240 0 0 chr3 143583229 143583580 -16016203 + (TA)n Simple_repeat Simple_repeat 1 351 0 1 1680 234 257 0 0 chr3 143583580 143583635 -16016148 + (CACG)n Simple_repeat Simple_repeat 1 55 0 1 1680 252 86 0 0 chr3 143583635 143583670 -16016113 + (TA)n Simple_repeat Simple_repeat 1 35 0 1 1680 234 257 0 0 chr3 143583670 143583684 -16016099 + (CACG)n Simple_repeat Simple_repeat 4 17 0 1 1680 252 355 33 11 chr3 143583684 143583775 -16016008 - B1F1 SINE Alu -10 139 47 1 1680 255 318 109 20 chr3 143583942 143584144 -16015639 - L1MEe LINE L1 -3858 2308 2089 1 1680 332 328 87 91 chr3 143584295 143584856 -16014927 - L1MEe LINE L1 -4276 1890 1332 1 1680 1067 252 213 17 chr3 143585450 143585802 -16013981 + RLTR20A1 LTR ERVK 1 447 -104 1 1680 471 113 0 0 chr3 143585802 143585873 -16013910 + (TG)n Simple_repeat Simple_repeat 2 72 0 1 1680 1067 252 213 17 chr3 143585873 143585981 -16013802 + RLTR20A1 LTR ERVK 448 550 -1 1 1680 211 289 39 26 chr3 143587506 143587584 -16012199 - MIRc SINE MIR -179 89 11 1 1680 651 88 0 0 chr3 143588914 143589005 -16010778 + (TG)n Simple_repeat Simple_repeat 2 92 0 1 1680 527 263 65 13 chr3 143589048 143589202 -16010581 - RSINE1 SINE B4 0 165 4 1 1680 367 333 37 0 chr3 143589752 143589860 -16009923 - PB1D10 SINE Alu -5 112 1 1 1680 307 318 26 52 chr3 143589860 143589888 -16009895 - ID SINE ID -143 81 57 1 1680 270 0 0 0 chr3 143591510 143591540 -16008243 + (CA)n Simple_repeat Simple_repeat 2 31 0 1 1680 1497 220 74 17 chr3 143591955 143592307 -16007476 + ORR1D1 LTR MaLR 3 374 0 1 1680 4655 54 29 2 chr3 143592567 143593121 -16006662 - L1_Mus1 LINE L1 0 6567 5999 1 1680 1222 62 7 0 chr3 143593317 143593462 -16006321 + B1_Mus2 SINE Alu 1 146 -1 1 1680 521 94 0 12 chr3 143593790 143593876 -16005907 + (TTCC)n Simple_repeat Simple_repeat 2 86 0 1 1680 307 280 0 13 chr3 143594130 143594198 -16005585 + polypyrimidine Low_complexity Low_complexity 11 78 0 1 1680 3152 148 80 98 chr3 143594198 143594820 -16004963 - RMER19C LTR ERVK 0 611 1 1 1680 21 36 0 0 chr3 143594971 143594999 -16004784 + AT_rich Low_complexity Low_complexity 1 28 0 1 1680 293 330 98 33 chr3 143596380 143596502 -16003281 - L2c LINE L2 0 3387 3258 1 1680 426 39 0 0 chr3 143597585 143597637 -16002146 + (TG)n Simple_repeat Simple_repeat 1 52 0 1 1680 969 110 0 0 chr3 143597697 143597842 -16001941 + (TG)n Simple_repeat Simple_repeat 2 146 0 1 1680 962 152 7 0 chr3 143598557 143598857 -16000926 + (CA)n Simple_repeat Simple_repeat 1 302 0 1 1680 361 333 25 61 chr3 143598894 143599057 -16000726 + MARNA DNA Mariner 95 251 -335 1 1680 383 290 77 99 chr3 143599308 143599580 -16000203 + MLT1A0 LTR MaLR 3 268 -97 1 1680 1655 199 73 39 chr3 143600230 143600585 -15999198 + ORR1B2 LTR MaLR 1 367 0 1 1680 7001 176 73 29 chr3 143600585 143602030 -15997753 + ORR1B2-int LTR MaLR 1 1509 0 1 1680 252 350 0 12 chr3 143602039 143602120 -15997663 + B4A SINE B4 205 284 -8 1 1680 213 271 0 0 chr3 143602183 143602305 -15997478 + (CA)n Simple_repeat Simple_repeat 1 122 0 1 1680 270 276 11 0 chr3 143602324 143602411 -15997372 + (CA)n Simple_repeat Simple_repeat 1 88 0 1 1680 329 229 0 8 chr3 143602434 143602566 -15997217 + (CA)n Simple_repeat Simple_repeat 2 132 0 1 1680 387 220 6 12 chr3 143602645 143602815 -15996968 + (CA)n Simple_repeat Simple_repeat 2 170 0 1 1680 396 0 0 0 chr3 143602912 143602956 -15996827 + (TA)n Simple_repeat Simple_repeat 2 45 0 1 1680 475 141 0 0 chr3 143602957 143603035 -15996748 + L1MA7 LINE L1 6165 6242 -49 1 1680 856 161 68 0 chr3 143603035 143603196 -15996587 - ORR1B1 LTR MaLR -1 393 222 1 1680 746 22 0 11 chr3 143603196 143603289 -15996494 + (CATATA)n Simple_repeat Simple_repeat 2 93 0 1 1680 425 252 87 55 chr3 143603604 143603822 -15995961 + L1MA8 LINE L1 4219 4443 -1697 1 1680 308 254 15 0 chr3 143603833 143603900 -15995883 + tRNA-Ala-GCY_ tRNA tRNA 1 68 -7 1 1680 1317 252 130 20 chr3 143603913 143604407 -15995376 + L1MA8 LINE L1 4489 5036 -1107 1 1680 684 203 6 84 chr3 143604430 143604584 -15995199 + L1MA7 LINE L1 6095 6242 -49 1 1680 2148 156 73 8 chr3 143604584 143604953 -15994830 - ORR1B1 LTR MaLR -1 393 1 1 1680 684 201 5 84 chr3 143604953 143605008 -15994775 + L1MA7 LINE L1 6243 6291 0 1 1680 1039 272 60 66 chr3 143605007 143605459 -15994324 + L1MA8 LINE L1 5593 6041 -250 1 1680 204 67 0 0 chr3 143605476 143605506 -15994277 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 1 1680 7084 54 4 0 chr3 143605521 143606342 -15993441 - L1_Mus1 LINE L1 -1 6566 5743 1 1680 1858 175 41 6 chr3 143606342 143606686 -15993097 - ORR1D1 LTR MaLR -16 358 3 1 1680 342 259 84 0 chr3 143606690 143606821 -15992962 + L1MA8 LINE L1 6044 6185 -106 1 1680 705 302 40 1 chr3 143606976 143607179 -15992604 + B3A SINE B2 2 210 -6 1 1680 24 0 0 0 chr3 143607183 143607207 -15992576 + AT_rich Low_complexity Low_complexity 1 24 0 1 1680 1165 98 0 18 chr3 143607933 143608152 -15991631 + (TTTC)n Simple_repeat Simple_repeat 1 214 0 1 1680 21 57 0 0 chr3 143609127 143609162 -15990621 + AT_rich Low_complexity Low_complexity 1 35 0 1 1680 208 246 0 0 chr3 143609449 143609506 -15990277 + (TTTG)n Simple_repeat Simple_repeat 1 57 0 1 1680 297 136 0 0 chr3 143609934 143610000 -15989783 + (G)n Simple_repeat Simple_repeat 1 66 0 1 1680 229 212 126 23 chr3 143613161 143613248 -15986535 - MLT1D LTR MaLR 0 505 410 1 1680 281 262 116 41 chr3 143613443 143613590 -15986193 - MER103 DNA DNA -1 165 8 1 1680 1269 85 0 0 chr3 143613625 143613801 -15985982 + (GGAGAA)n Simple_repeat Simple_repeat 4 179 0 1 1680 245 238 16 16 chr3 143614580 143614644 -15985139 + A-rich Low_complexity Low_complexity 4 67 0 1 1680 232 323 0 0 chr3 143614666 143614731 -15985052 + MER45A DNA Tip100 61 125 -53 1 1680 444 19 0 0 chr3 143614917 143614970 -15984813 + (CA)n Simple_repeat Simple_repeat 1 53 0 1 1680 327 121 0 0 chr3 143615688 143615746 -15984037 + (TC)n Simple_repeat Simple_repeat 1 58 0 1 1680 394 342 84 21 chr3 143616478 143616669 -15983114 + MER3 DNA MER1_type 7 209 0 1 1680 195 343 57 50 chr3 143617327 143617468 -15982315 - MIRc SINE MIR -46 222 81 1 1680 3570 174 50 11 chr3 143618481 143619166 -15980617 - L1_Mur3 LINE L1 -5704 1278 569 1 1680 580 128 18 9 chr3 143619439 143619549 -15980234 + C-rich Low_complexity Low_complexity 5 115 0 1 1680 633 245 18 6 chr3 143619719 143619883 -15979900 - B4A SINE B4 -10 282 117 1 1680 256 250 94 57 chr3 143620425 143620531 -15979252 - MER5A DNA MER1_type -3 186 77 1 1680 210 71 0 0 chr3 143620621 143620649 -15979134 + (CCCCCA)n Simple_repeat Simple_repeat 3 30 0 1 1680 21 0 0 0 chr3 143621043 143621064 -15978719 + AT_rich Low_complexity Low_complexity 1 21 0 1 1680 1009 243 0 0 chr3 143621072 143621278 -15978505 - B3 SINE B2 -8 208 3 1 1680 240 35 0 0 chr3 143623153 143623182 -15976601 + (CA)n Simple_repeat Simple_repeat 2 30 0 1 1680 381 22 0 0 chr3 143623182 143623227 -15976556 + (GA)n Simple_repeat Simple_repeat 2 47 0 1 1680 455 276 21 0 chr3 143623798 143623943 -15975840 + MLT1J2 LTR MaLR 45 192 -256 1 1680 24 0 0 0 chr3 143624351 143624375 -15975408 + AT_rich Low_complexity Low_complexity 1 24 0 1 1680 387 41 0 0 chr3 143625166 143625215 -15974568 + (TC)n Simple_repeat Simple_repeat 2 50 0 1 1680 448 182 0 0 chr3 143625836 143625924 -15973859 + B1_Mus2 SINE Alu 59 146 -1 1 1680 349 281 86 93 chr3 143626495 143626926 -15972857 + L1ME2 LINE L1 4533 4960 -1186 1 1680 623 286 94 40 chr3 143626927 143627204 -15972579 + B4 SINE B4 1 292 0 1 1680 528 16 0 0 chr3 143627258 143627319 -15972464 + (TG)n Simple_repeat Simple_repeat 1 61 0 1 1680 570 192 75 30 chr3 143627606 143627740 -15972043 + B1_Mur2 SINE Alu 9 148 -1 1 1680 1343 278 92 69 chr3 143627871 143628085 -15971698 + L1ME2 LINE L1 5293 5491 -673 1 1680 970 211 33 9 chr3 143628085 143628296 -15971487 + B3 SINE B2 1 216 0 1 1680 1343 278 92 69 chr3 143628296 143628932 -15970851 + L1ME2 LINE L1 5492 6162 -2 1 1680 881 176 0 6 chr3 143628988 143629165 -15970618 + CT-rich Low_complexity Low_complexity 3 178 0 1 1680 1159 68 7 0 chr3 143629165 143629311 -15970472 - B1_Mus1 SINE Alu 0 148 2 1 1680 221 308 171 9 chr3 143629728 143629833 -15969950 - B1F SINE Alu -20 129 8 1 1680 411 260 189 0 chr3 143630434 143630561 -15969222 + B3 SINE B2 65 215 -1 1 1680 420 274 61 73 chr3 143630804 143630969 -15968814 + RSINE1 SINE B4 3 165 0 1 1680 42 20 0 0 chr3 143630984 143631033 -15968750 + AT_rich Low_complexity Low_complexity 1 49 0 1 1680 282 286 0 0 chr3 143633171 143633241 -15966542 + CT-rich Low_complexity Low_complexity 3 72 0 1 1680 282 125 0 0 chr3 143637803 143637851 -15961932 + (TG)n Simple_repeat Simple_repeat 1 48 0 1 1680 477 0 0 0 chr3 143637874 143637927 -15961856 + (TA)n Simple_repeat Simple_repeat 1 53 0 1 1680 225 186 0 63 chr3 143638064 143638127 -15961656 + GA-rich Low_complexity Low_complexity 2 60 0 1 1680 258 274 189 30 chr3 143638181 143638313 -15961470 + B4A SINE B4 47 199 -93 1 1680 271 289 0 13 chr3 143638353 143638430 -15961353 + B1F2 SINE Alu 38 113 -36 1 1680 192 107 17 67 chr3 143638438 143638498 -15961285 + CT-rich Low_complexity Low_complexity 2 58 0 1 1680 288 0 0 0 chr3 143638630 143638662 -15961121 + (GA)n Simple_repeat Simple_repeat 1 32 0 1 1680 216 149 0 0 chr3 143638701 143638748 -15961035 + (TC)n Simple_repeat Simple_repeat 2 48 0 1 1680 405 0 0 0 chr3 143638799 143638844 -15960939 + (TC)n Simple_repeat Simple_repeat 1 45 0 1 1680 360 0 0 0 chr3 143638844 143638883 -15960900 + (CA)n Simple_repeat Simple_repeat 1 40 0 1 1680 216 149 0 0 chr3 143638948 143638995 -15960788 + (TC)n Simple_repeat Simple_repeat 2 48 0 2 1680 243 0 0 0 chr3 143639046 143639073 -15960710 + (TC)n Simple_repeat Simple_repeat 1 27 0 2 1680 402 69 0 0 chr3 143639073 143639130 -15960653 + (CA)n Simple_repeat Simple_repeat 1 58 0 2 1680 787 307 46 42 chr3 143640332 143640594 -15959189 - B4A SINE B4 -20 272 10 2 1680 21 0 0 0 chr3 143642790 143642811 -15956972 + AT_rich Low_complexity Low_complexity 1 21 0 2 1680 338 129 0 16 chr3 143642835 143642898 -15956885 + (TA)n Simple_repeat Simple_repeat 2 63 0 2 1680 215 364 10 10 chr3 143647361 143647461 -15952322 + ID_B1 SINE B4 92 191 -33 2 1680 340 250 0 0 chr3 143647497 143647569 -15952214 + ID4_ SINE ID 2 73 -10 2 1680 242 318 200 7 chr3 143647684 143647839 -15951944 + MIRb SINE MIR 65 249 -19 2 1680 564 140 0 0 chr3 143649556 143649649 -15950134 + (GGAA)n Simple_repeat Simple_repeat 4 96 0 2 1680 1384 33 0 22 chr3 143649649 143649833 -15949950 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 2 1680 183 42 0 0 chr3 143650592 143650616 -15949167 + (CAA)n Simple_repeat Simple_repeat 1 24 0 2 1680 208 0 62 0 chr3 143650721 143650753 -15949030 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 2 1680 623 224 201 0 chr3 143651112 143651286 -15948497 + B3 SINE B2 2 210 -6 2 1680 182 241 74 0 chr3 143651661 143651715 -15948068 + L2b LINE L2 3318 3375 0 2 1680 714 278 26 10 chr3 143652054 143652247 -15947536 - B4 SINE B4 -9 283 88 2 1680 336 24 0 0 chr3 143652378 143652419 -15947364 + (CA)n Simple_repeat Simple_repeat 2 42 0 2 1680 210 329 0 13 chr3 143652538 143652615 -15947168 + CT-rich Low_complexity Low_complexity 4 79 0 2 1680 950 243 23 9 chr3 143653934 143654150 -15945633 - ID_B1 SINE B4 -5 219 1 2 1680 372 280 82 20 chr3 143654461 143654607 -15945176 - MLT1H LTR MaLR -394 155 1 2 26 1073 58 0 14 chr3 143654820 143654960 -15944823 + B1_Mus2 SINE Alu 1 138 -9 2 1681 2844 82 42 8 chr3 143655134 143655517 -15944266 - MTA_Mm LTR MaLR 0 396 1 2 1681 2017 201 2 36 chr3 143656980 143657397 -15942386 - MTC LTR MaLR -18 403 1 2 1681 2712 220 46 185 chr3 143657622 143659080 -15940703 + RMER1B Other Other 1 1052 -14 2 1681 517 330 91 10 chr3 143660316 143660524 -15939259 + B4A SINE B4 1 225 -67 2 1681 627 81 0 0 chr3 143661878 143661977 -15937806 + (TC)n Simple_repeat Simple_repeat 2 100 0 2 1681 678 178 0 0 chr3 143662092 143662255 -15937528 + (TG)n Simple_repeat Simple_repeat 1 163 0 2 1681 772 284 104 30 chr3 143662452 143662790 -15936993 + MTEa LTR MaLR 3 365 -14 2 1681 351 0 0 0 chr3 143662914 143662953 -15936830 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 2 1681 1236 171 5 0 chr3 143663903 143664120 -15935663 - URR1A DNA MER1_type 0 226 9 2 1681 625 305 40 15 chr3 143666875 143667075 -15932708 + B3A SINE B2 1 205 -11 2 1681 438 127 0 0 chr3 143667709 143667780 -15932003 + (GGA)n Simple_repeat Simple_repeat 2 72 0 2 1681 713 185 20 40 chr3 143668126 143668278 -15931505 + B1_Mur4 SINE Alu 2 150 0 2 1681 622 310 46 85 chr3 143668905 143669037 -15930746 - Lx8 LINE L1 0 7473 7337 2 1681 180 0 0 0 chr3 143669037 143669057 -15930726 + (TGG)n Simple_repeat Simple_repeat 1 20 0 2 1681 622 310 46 85 chr3 143669057 143669070 -15930713 - Lx8 LINE L1 -137 7336 7327 2 1681 594 0 0 0 chr3 143669070 143669136 -15930647 + (TC)n Simple_repeat Simple_repeat 1 66 0 2 1681 622 310 46 85 chr3 143669136 143669532 -15930251 - Lx8 LINE L1 -147 7326 6953 2 1681 230 343 0 0 chr3 143670765 143670835 -15928948 + (TG)n Simple_repeat Simple_repeat 2 71 0 2 1681 441 162 27 0 chr3 143670962 143671073 -15928710 + (TA)n Simple_repeat Simple_repeat 2 115 0 2 1681 22 0 0 0 chr3 143672842 143672864 -15926919 + AT_rich Low_complexity Low_complexity 1 22 0 2 1681 21 0 0 0 chr3 143672943 143672964 -15926819 + AT_rich Low_complexity Low_complexity 1 21 0 2 1681 627 14 0 0 chr3 143673239 143673311 -15926472 + (TC)n Simple_repeat Simple_repeat 1 72 0 2 1681 409 172 8 8 chr3 143675836 143675959 -15923824 + CT-rich Low_complexity Low_complexity 1 123 0 2 1681 218 173 19 19 chr3 143677514 143677567 -15922216 + (TA)n Simple_repeat Simple_repeat 1 53 0 2 1681 435 137 0 0 chr3 143677567 143677640 -15922143 + (TG)n Simple_repeat Simple_repeat 2 74 0 2 1681 1747 219 30 21 chr3 143678219 143678629 -15921154 - MTD LTR MaLR -33 386 1 2 1681 247 25 0 48 chr3 143679123 143679165 -15920618 + (TAAAAA)n Simple_repeat Simple_repeat 2 41 0 2 1681 445 293 121 34 chr3 143679332 143679654 -15920129 + L1M4c LINE L1 1465 1814 -4570 2 1681 248 197 16 0 chr3 143679916 143679977 -15919806 - L1M4 LINE L1 -343 5831 5770 2 1681 548 309 44 20 chr3 143680001 143680252 -15919531 + L1MB7 LINE L1 5876 6132 -52 2 1681 2510 88 186 0 chr3 143680252 143680617 -15919166 - RLTR10C LTR ERVK -3 433 1 2 1681 813 192 180 14 chr3 143680624 143680835 -15918948 + Lx2B LINE L1 6745 6990 -10 2 1681 28 29 0 0 chr3 143680899 143680934 -15918849 + AT_rich Low_complexity Low_complexity 1 35 0 2 1681 328 257 99 46 chr3 143681207 143681358 -15918425 - MLT1E1 LTR MaLR -10 644 486 2 1681 492 18 0 0 chr3 143681578 143681635 -15918148 + (CA)n Simple_repeat Simple_repeat 1 57 0 2 1681 593 262 178 39 chr3 143681644 143681874 -15917909 - B4 SINE B4 -29 263 2 2 1681 465 76 38 0 chr3 143682972 143683051 -15916732 + (GA)n Simple_repeat Simple_repeat 2 83 0 2 1681 1050 105 17 0 chr3 143683073 143683245 -15916538 + (AGGGGG)n Simple_repeat Simple_repeat 3 177 0 2 1681 731 11 11 0 chr3 143683950 143684038 -15915745 + (TC)n Simple_repeat Simple_repeat 1 89 0 2 1681 486 282 23 34 chr3 143684083 143684259 -15915524 + GA-rich Low_complexity Low_complexity 5 178 0 2 1681 282 300 133 17 chr3 143684443 143684684 -15915099 - Arthur1 DNA Tip100 -2750 1197 929 2 1681 696 139 188 6 chr3 143684690 143684871 -15914912 - Lx9 LINE L1 -1 7643 7430 2 1681 327 267 84 79 chr3 143685161 143685364 -15914419 - MLT1A1 LTR MaLR -204 204 1 2 1681 2813 67 17 0 chr3 143685603 143685961 -15913822 + L1_Mus1 LINE L1 6204 6567 0 2 1681 238 346 25 0 chr3 143686447 143686528 -15913255 + MIRm SINE MIR 3 85 -191 2 1681 369 219 0 0 chr3 143687863 143687977 -15911806 + (TG)n Simple_repeat Simple_repeat 2 115 0 2 1681 274 343 0 10 chr3 143688002 143688102 -15911681 - B4A SINE B4 -16 276 178 2 1681 603 0 0 0 chr3 143688110 143688177 -15911606 + (TC)n Simple_repeat Simple_repeat 1 67 0 2 1681 198 0 0 0 chr3 143688177 143688198 -15911585 + (CA)n Simple_repeat Simple_repeat 1 22 0 2 1681 231 235 226 39 chr3 143688198 143688300 -15911483 - B4A SINE B4 -170 122 2 2 1681 329 298 56 8 chr3 143689765 143689890 -15909893 + ORR1D2 LTR MaLR 7 137 -233 2 1681 681 95 26 0 chr3 143689907 143690023 -15909760 + (TC)n Simple_repeat Simple_repeat 2 120 0 2 1681 37250 32 3 9 chr3 143693248 143698451 -15901332 + L1Md_A LINE L1 416 5586 -297 2 1681 8682 30 0 0 chr3 143698451 143699446 -15900337 + L1Md_A LINE L1 5587 6581 -1 2 1681 26 0 0 0 chr3 143700007 143700033 -15899750 + AT_rich Low_complexity Low_complexity 1 26 0 2 1681 476 307 6 32 chr3 143700036 143700194 -15899589 - RSINE1 SINE B4 0 165 12 2 1681 697 219 48 24 chr3 143700270 143700476 -15899307 + L1MB4 LINE L1 5802 6012 -168 2 1681 551 288 113 31 chr3 143700494 143700716 -15899067 - Lx8 LINE L1 -214 7259 7020 2 1681 466 301 39 0 chr3 143700862 143701018 -15898765 + MIR SINE MIR 63 224 -38 2 1681 1094 162 147 0 chr3 143701762 143701959 -15897824 - URR1A DNA MER1_type 0 226 1 2 1681 499 142 16 24 chr3 143701994 143702117 -15897666 + (TA)n Simple_repeat Simple_repeat 2 123 0 2 1681 350 267 36 45 chr3 143702122 143702232 -15897551 + B1F1 SINE Alu 2 110 -39 2 1681 966 271 32 32 chr3 143703226 143703566 -15896217 + ORR1E LTR MaLR 1 340 -19 2 1681 513 0 0 0 chr3 143703576 143703633 -15896150 + (TAAAA)n Simple_repeat Simple_repeat 2 58 0 2 1681 354 252 0 112 chr3 143707084 143707209 -15892574 - RMER30 DNA MER1_type -36 166 56 2 1681 209 280 106 11 chr3 143707398 143707492 -15892291 - L2a LINE L2 -41 3385 3283 2 1681 680 299 94 26 chr3 143707756 143708137 -15891646 - L1MD2 LINE L1 -1 6358 5952 2 1681 267 31 0 0 chr3 143708613 143708645 -15891138 + (CA)n Simple_repeat Simple_repeat 1 32 0 2 1681 477 280 70 74 chr3 143709231 143709489 -15890294 - RMER15 LTR ERVL -18 557 301 2 1681 347 174 31 148 chr3 143709535 143709663 -15890120 - RMER15 LTR ERVL -461 114 2 2 1681 341 306 94 44 chr3 143709729 143709910 -15889873 - ORR1E LTR MaLR -166 193 4 2 1681 943 68 18 12 chr3 143711318 143711482 -15888301 + (TAGA)n Simple_repeat Simple_repeat 1 165 0 2 1681 278 297 99 0 chr3 143711623 143711714 -15888069 + PB1D10 SINE Alu 1 100 -17 2 1681 198 0 0 0 chr3 143711811 143711833 -15887950 + (TTG)n Simple_repeat Simple_repeat 2 23 0 2 1681 368 274 68 10 chr3 143711943 143712046 -15887737 + PB1D10 SINE Alu 2 110 -7 2 1681 441 36 0 0 chr3 143714088 143714143 -15885640 + (CA)n Simple_repeat Simple_repeat 1 55 0 2 1681 348 83 0 0 chr3 143714679 143714727 -15885056 + (A)n Simple_repeat Simple_repeat 1 48 0 2 1681 1049 96 6 0 chr3 143715379 143715535 -15884248 + (GAAA)n Simple_repeat Simple_repeat 2 158 0 2 1681 400 365 56 19 chr3 143716540 143716808 -15882975 + MLT1I LTR MaLR 42 319 -92 2 1681 295 227 40 0 chr3 143717153 143717228 -15882555 + B3 SINE B2 134 211 -5 2 1681 200 270 71 9 chr3 143717262 143717374 -15882409 + L2 LINE L2 2568 2686 -733 2 1681 733 333 102 28 chr3 143719266 143719726 -15880057 + MLT1H1 LTR MaLR 54 547 -8 2 1681 227 167 0 0 chr3 143719975 143720017 -15879766 + PB1D10 SINE Alu 50 91 -26 2 1681 450 0 0 0 chr3 143720021 143720071 -15879712 + (CA)n Simple_repeat Simple_repeat 1 50 0 2 1681 26 30 0 0 chr3 143720201 143720234 -15879549 + AT_rich Low_complexity Low_complexity 1 33 0 3 1681 257 301 47 35 chr3 143720675 143720761 -15879022 + PB1D10 SINE Alu 7 93 -24 3 1681 513 0 0 0 chr3 143720761 143720818 -15878965 + (TAGA)n Simple_repeat Simple_repeat 2 58 0 3 1681 427 302 53 29 chr3 143720933 143721122 -15878661 + MLT1H1 LTR MaLR 298 549 -6 3 1681 306 244 0 24 chr3 143721245 143721329 -15878454 + MIRc SINE MIR 137 218 -50 3 1681 207 0 0 0 chr3 143721969 143721992 -15877791 + (TG)n Simple_repeat Simple_repeat 2 24 0 3 1681 659 216 12 0 chr3 143721992 143722163 -15877620 + (CATA)n Simple_repeat Simple_repeat 2 174 0 3 1681 473 316 59 0 chr3 143722673 143722809 -15876974 + MTEa LTR MaLR 3 146 -233 3 1681 441 0 0 0 chr3 143723313 143723362 -15876421 + (CA)n Simple_repeat Simple_repeat 2 50 0 3 1681 282 292 0 0 chr3 143723936 143724001 -15875782 - ID4_ SINE ID -4 79 15 3 1681 2439 139 42 10 chr3 143724300 143724708 -15875075 - MTC LTR MaLR 0 421 1 3 1681 192 342 51 26 chr3 143725999 143726116 -15873667 + MIRb SINE MIR 12 131 -137 3 1681 265 307 140 41 chr3 143726311 143726654 -15873129 + L1M6 LINE L1 2108 2484 -4012 3 1681 543 313 20 88 chr3 143726699 143726993 -15872790 + B4A SINE B4 1 274 -18 3 1681 1197 68 0 0 chr3 143727635 143727782 -15872001 + B1_Mus1 SINE Alu 2 148 0 3 1681 332 0 47 0 chr3 143727786 143727829 -15871954 + (TAAAA)n Simple_repeat Simple_repeat 1 45 0 3 1681 180 0 0 0 chr3 143728051 143728071 -15871712 + (GA)n Simple_repeat Simple_repeat 1 20 0 3 1681 405 0 0 0 chr3 143731565 143731610 -15868173 + (TG)n Simple_repeat Simple_repeat 1 45 0 3 1681 657 276 77 0 chr3 143732139 143732309 -15867474 + ID_B1 SINE B4 1 183 -41 3 1681 441 154 0 37 chr3 143732344 143732452 -15867331 + CT-rich Low_complexity Low_complexity 1 104 0 3 1681 286 277 24 0 chr3 143732455 143732538 -15867245 + GA-rich Low_complexity Low_complexity 4 88 0 3 1681 397 312 45 50 chr3 143732558 143732757 -15867026 + B3A SINE B2 1 198 0 3 1681 750 263 88 19 chr3 143733627 143733887 -15865896 + B4 SINE B4 3 280 -12 3 1681 743 280 100 15 chr3 143734326 143734587 -15865196 + B4 SINE B4 5 287 -5 3 1681 193 309 114 38 chr3 143734765 143734923 -15864860 - MIR SINE MIR -78 184 15 3 1681 198 323 126 15 chr3 143735762 143735897 -15863886 + MIRb SINE MIR 103 252 -16 3 1681 271 250 429 0 chr3 143736188 143736363 -15863420 + MLT1A1 LTR MaLR 75 374 0 3 1681 607 279 63 48 chr3 143737843 143738050 -15861733 + B4A SINE B4 5 214 -78 3 1681 7462 78 17 2 chr3 143738111 143739094 -15860689 - L1_Mus4 LINE L1 -2 6634 5637 3 1681 609 294 41 36 chr3 143739849 143740068 -15859715 + B4A SINE B4 2 221 -71 3 1681 3532 28 0 0 chr3 143740202 143740598 -15859185 - MTA_Mm LTR MaLR 0 396 1 3 1681 1201 279 23 49 chr3 143742667 143743138 -15856645 + Charlie4a DNA MER1_type 47 505 -3 3 1681 389 295 116 0 chr3 143743679 143743808 -15855975 + RSINE1 SINE B4 3 146 -19 3 1681 303 331 82 50 chr3 143744348 143744507 -15855276 + RSINE1 SINE B4 2 165 0 3 1681 247 254 0 0 chr3 143744509 143744564 -15855219 + (CA)n Simple_repeat Simple_repeat 1 55 0 3 1681 4743 15 0 0 chr3 143744793 143745327 -15854456 + L1Md_T LINE L1 5053 5586 -297 3 1681 8204 53 0 0 chr3 143745327 143746349 -15853434 + L1Md_T LINE L1 5587 6582 0 3 1681 551 266 37 54 chr3 143746374 143746616 -15853167 + L1MC4 LINE L1 845 1082 -5133 3 1681 788 221 44 0 chr3 143747271 143747452 -15852331 + B3 SINE B2 4 192 -24 3 1681 24 0 0 0 chr3 143747452 143747476 -15852307 + AT_rich Low_complexity Low_complexity 1 24 0 3 1681 1439 233 24 107 chr3 143747483 143747896 -15851887 - MTE2a LTR MaLR 0 379 1 3 1681 271 299 91 43 chr3 143748116 143748392 -15851391 + L1MC4 LINE L1 4855 5143 -1071 3 1681 1004 314 67 32 chr3 143749101 143749697 -15850086 + L1MC4a LINE L1 7251 7867 -15 3 1681 192 77 0 0 chr3 143751288 143751314 -15848469 + (CAGG)n Simple_repeat Simple_repeat 2 27 0 3 1681 694 255 33 38 chr3 143752169 143752381 -15847402 + ID_B1 SINE B4 1 211 -13 3 1681 239 79 26 0 chr3 143753772 143753810 -15845973 + (TAAA)n Simple_repeat Simple_repeat 1 39 0 3 1681 354 80 0 0 chr3 143754703 143754753 -15845030 + (CA)n Simple_repeat Simple_repeat 1 50 0 3 1681 507 270 21 28 chr3 143754754 143754895 -15844888 - B3A SINE B2 -58 140 1 3 1681 583 287 76 16 chr3 143755340 143755524 -15844259 + MTEb LTR MaLR 185 379 0 3 1681 416 283 84 16 chr3 143756009 143756210 -15843573 - ORR1D2 LTR MaLR -92 278 73 3 1681 227 313 43 28 chr3 143756525 143756677 -15843106 + MIRb SINE MIR 50 204 -64 3 1681 467 303 137 77 chr3 143758603 143758939 -15840844 - MTE2a LTR MaLR -20 359 4 3 1681 348 349 8 8 chr3 143758963 143759090 -15840693 + ID_B1 SINE B4 90 216 -8 3 1681 189 294 80 35 chr3 143759163 143759276 -15840507 - L2a LINE L2 0 3426 3309 3 1681 229 398 62 0 chr3 143759516 143759629 -15840154 + L3 LINE CR1 3889 4008 -481 3 1681 278 331 23 61 chr3 143759741 143759873 -15839910 - MIRb SINE MIR -47 221 95 3 1681 297 0 0 0 chr3 143761486 143761519 -15838264 + (CAG)n Simple_repeat Simple_repeat 3 35 0 3 1681 342 0 0 0 chr3 143762669 143762707 -15837076 + (TG)n Simple_repeat Simple_repeat 2 39 0 3 1681 513 32 0 0 chr3 143762939 143763002 -15836781 + (CA)n Simple_repeat Simple_repeat 1 63 0 3 1681 509 331 7 27 chr3 143763538 143763687 -15836096 + RSINE1 SINE B4 8 153 -12 3 1681 288 77 0 0 chr3 143763699 143763738 -15836045 + (CA)n Simple_repeat Simple_repeat 2 40 0 3 1681 215 203 34 0 chr3 143764382 143764441 -15835342 + A-rich Low_complexity Low_complexity 2 62 0 3 1681 505 228 35 0 chr3 143764452 143764566 -15835217 + ID_B1 SINE B4 87 204 -20 3 1681 549 0 0 0 chr3 143764568 143764629 -15835154 + (GGAA)n Simple_repeat Simple_repeat 1 61 0 3 1681 258 387 60 34 chr3 143764733 143764966 -15834817 + MIRb SINE MIR 10 248 -20 3 1681 1044 111 0 0 chr3 143765873 143766099 -15833684 + (TATATG)n Simple_repeat Simple_repeat 1 226 0 3 1681 353 219 67 20 chr3 143767946 143768074 -15831709 - MIRb SINE MIR -102 166 30 3 1681 1008 101 0 0 chr3 143768369 143768547 -15831236 + (TC)n Simple_repeat Simple_repeat 1 178 0 3 1681 225 159 0 0 chr3 143768548 143768592 -15831191 + (CA)n Simple_repeat Simple_repeat 1 44 0 3 1681 204 40 0 0 chr3 143771864 143771889 -15827894 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 3 1681 1038 149 3 0 chr3 143771991 143772290 -15827493 + (TCCA)n Simple_repeat Simple_repeat 1 300 0 3 1681 850 281 87 48 chr3 143772295 143772545 -15827238 - MLT2D LTR ERVL -68 346 96 3 1681 553 27 27 0 chr3 143772545 143772620 -15827163 + (TAAA)n Simple_repeat Simple_repeat 4 80 0 3 1681 850 281 87 48 chr3 143772620 143772702 -15827081 - MLT2D LTR ERVL -319 95 2 3 1681 324 0 0 0 chr3 143774026 143774062 -15825721 + (A)n Simple_repeat Simple_repeat 1 36 0 3 1681 387 0 0 0 chr3 143774062 143774105 -15825678 + (TA)n Simple_repeat Simple_repeat 1 43 0 3 1681 225 0 0 0 chr3 143774106 143774131 -15825652 + (GA)n Simple_repeat Simple_repeat 2 26 0 3 1681 432 0 0 0 chr3 143774385 143774433 -15825350 + (TAAAA)n Simple_repeat Simple_repeat 4 51 0 3 1681 316 235 85 12 chr3 143774571 143774653 -15825130 + PB1D10 SINE Alu 19 106 -11 3 1681 213 121 0 0 chr3 143774653 143774686 -15825097 + (CAT)n Simple_repeat Simple_repeat 2 34 0 3 1681 857 223 107 28 chr3 143774972 143775299 -15824484 + MLT1B LTR MaLR 12 364 -26 3 1681 455 39 0 0 chr3 143775447 143775498 -15824285 + L1Md_F2 LINE L1 5536 5586 -297 3 1681 8468 31 2 11 chr3 143775498 143776503 -15823280 + L1Md_F2 LINE L1 5587 6582 0 3 1681 2427 171 0 2 chr3 143777671 143778082 -15821701 - MTC LTR MaLR -11 410 1 3 1681 5252 160 97 22 chr3 143778084 143778274 -15821509 - MTC-int LTR MaLR -2 1256 1053 3 1681 1168 47 0 39 chr3 143778274 143778428 -15821355 + B1_Mus1 SINE Alu 1 148 0 3 1681 5252 160 97 22 chr3 143778428 143779398 -15820385 - MTC-int LTR MaLR -206 1052 10 3 1681 2499 169 29 0 chr3 143779413 143779822 -15819961 - MTC LTR MaLR 0 421 1 3 1681 22 0 0 0 chr3 143779844 143779866 -15819917 + AT_rich Low_complexity Low_complexity 1 22 0 3 1681 189 0 0 0 chr3 143780555 143780576 -15819207 + (CGGT)n Simple_repeat Simple_repeat 1 21 0 3 1681 183 349 131 17 chr3 143780841 143781016 -15818767 + MIR SINE MIR 33 227 -35 3 1681 447 19 0 0 chr3 143781340 143781392 -15818391 + (TG)n Simple_repeat Simple_repeat 2 53 0 3 1681 255 61 0 0 chr3 143781399 143781432 -15818351 + (TAA)n Simple_repeat Simple_repeat 2 34 0 3 1681 317 274 14 3 chr3 143782104 143782197 -15817586 + ID4 SINE ID 15 107 -45 3 1681 422 321 23 15 chr3 143782303 143782436 -15817347 + RSINE1 SINE B4 1 134 -31 3 1681 258 105 0 0 chr3 143782467 143782505 -15817278 + (CAT)n Simple_repeat Simple_repeat 1 38 0 3 1681 327 246 34 42 chr3 143782605 143782724 -15817059 - PB1D9 SINE Alu -2 118 1 3 1681 712 229 70 21 chr3 143782790 143782977 -15816806 + B3A SINE B2 2 197 -1 3 1681 430 312 163 12 chr3 143783496 143783827 -15815956 + L1MEg LINE L1 840 1220 -5022 3 1681 273 293 113 26 chr3 143783939 143784205 -15815578 + L1MEg LINE L1 1338 1626 -4540 3 1681 734 329 73 27 chr3 143784526 143784898 -15814885 + Lx8 LINE L1 6729 7117 -356 3 1681 239 427 30 0 chr3 143784991 143785155 -15814628 + Lx8 LINE L1 7169 7337 -136 3 1681 258 317 21 0 chr3 143785403 143785545 -15814238 + L1MEg LINE L1 2127 2271 -3875 3 1682 298 378 13 13 chr3 143786199 143786349 -15813434 + LTR16A LTR ERVL 183 332 -119 3 1682 412 302 1 10 chr3 143787189 143787307 -15812476 - B1F1 SINE Alu 0 120 3 3 1682 297 0 0 0 chr3 143788035 143788068 -15811715 + (TG)n Simple_repeat Simple_repeat 1 33 0 3 1682 1135 280 14 22 chr3 143788120 143788481 -15811302 - MTE2b LTR MaLR -2 377 20 3 1682 584 309 140 0 chr3 143788485 143788663 -15811120 - B4A SINE B4 -88 204 2 3 1682 228 280 51 51 chr3 143789479 143789577 -15810206 + L1_Mm LINE L1 4475 4572 -1311 3 1682 874 264 59 59 chr3 143790587 143790857 -15808926 - B4A SINE B4 -18 274 5 3 1682 378 0 0 0 chr3 143791136 143791178 -15808605 + (A)n Simple_repeat Simple_repeat 1 42 0 4 1682 385 345 99 42 chr3 143791268 143791601 -15808182 + MLT1A0 LTR MaLR 4 355 -10 4 1682 232 271 100 17 chr3 143792089 143792209 -15807574 + L3 LINE CR1 4184 4313 -176 4 1682 2270 143 62 0 chr3 143795153 143795523 -15804260 - ORR1B1 LTR MaLR 0 394 2 4 1682 773 188 4 0 chr3 143795701 143795940 -15803843 + GA-rich Low_complexity Low_complexity 1 240 0 4 1682 4393 146 53 112 chr3 143797241 143798310 -15801473 + RMER21A LTR ERV1 5 945 -2 4 1682 374 216 3 22 chr3 143798690 143798792 -15800991 + ORR1B1 LTR MaLR 1 103 -226 4 1682 1584 133 39 112 chr3 143798798 143799129 -15800654 + ORR1B1 LTR MaLR 80 386 -8 4 1682 1664 176 99 3 chr3 143799513 143799855 -15799928 + MTEb LTR MaLR 5 379 0 4 1682 201 250 22 160 chr3 143799941 143800122 -15799661 + MIRb SINE MIR 49 204 -64 4 1682 583 269 20 7 chr3 143801064 143801210 -15798573 - B1F SINE Alu -1 148 1 4 1682 904 301 136 9 chr3 143801490 143801835 -15797948 - MER20B DNA MER1_type -394 389 1 4 1682 382 299 78 33 chr3 143802306 143802486 -15797297 + RMER30 DNA MER1_type 8 195 -7 4 1682 1102 75 7 26 chr3 143802818 143802969 -15796814 + B1_Mus1 SINE Alu 1 148 0 4 1682 243 0 0 0 chr3 143803097 143803124 -15796659 + (TTCA)n Simple_repeat Simple_repeat 3 29 0 4 1682 290 231 226 22 chr3 143803138 143803187 -15796596 - B3 SINE B2 -5 211 146 4 1682 405 0 0 0 chr3 143803187 143803232 -15796551 + (CA)n Simple_repeat Simple_repeat 1 45 0 4 1682 290 231 226 22 chr3 143803232 143803319 -15796464 - B3 SINE B2 -71 145 48 4 1682 198 0 0 0 chr3 143806410 143806432 -15793351 + (TGG)n Simple_repeat Simple_repeat 1 22 0 4 1682 26 0 0 0 chr3 143806566 143806592 -15793191 + AT_rich Low_complexity Low_complexity 1 26 0 4 1682 474 18 0 0 chr3 143806592 143806647 -15793136 + (TG)n Simple_repeat Simple_repeat 2 56 0 4 1682 453 305 0 0 chr3 143806648 143806776 -15793007 - B3A SINE B2 -43 155 28 4 1682 423 0 0 0 chr3 143807288 143807335 -15792448 + (TC)n Simple_repeat Simple_repeat 1 47 0 4 1682 14519 19 0 1 chr3 143807479 143809126 -15790657 + L1Md_A LINE L1 3941 5586 -297 4 1682 8685 24 2 0 chr3 143809126 143810120 -15789663 + L1Md_A LINE L1 5587 6582 0 4 1682 459 0 0 0 chr3 143810159 143810210 -15789573 + (TAAA)n Simple_repeat Simple_repeat 3 53 0 4 1682 837 222 330 20 chr3 143810319 143810607 -15789176 + ORR1E LTR MaLR 3 379 0 4 1682 279 0 0 0 chr3 143810632 143810663 -15789120 + (TG)n Simple_repeat Simple_repeat 2 32 0 4 1682 264 170 0 0 chr3 143811242 143811295 -15788488 + (TA)n Simple_repeat Simple_repeat 1 53 0 4 1682 540 303 52 0 chr3 143811333 143811488 -15788295 + RSINE1 SINE B4 3 165 0 4 1682 940 309 10 104 chr3 143812205 143812609 -15787174 - MTEa LTR MaLR -3 376 11 4 1682 475 344 28 16 chr3 143812710 143812964 -15786819 - HAL1 LINE L1 -870 1637 1381 4 1682 318 98 0 0 chr3 143813385 143813436 -15786347 + (TG)n Simple_repeat Simple_repeat 2 52 0 4 1682 385 275 55 60 chr3 143813455 143813637 -15786146 - B4A SINE B4 -36 256 76 4 1682 718 308 103 8 chr3 143814503 143814765 -15785018 + B4 SINE B4 2 288 -4 4 1682 296 234 26 0 chr3 143814811 143814888 -15784895 + MLT1B LTR MaLR 303 381 -9 4 1682 395 305 94 15 chr3 143814896 143815142 -15784641 - MIR SINE MIR -2 260 3 4 1682 267 104 0 0 chr3 143817796 143817844 -15781939 + (CAAAAA)n Simple_repeat Simple_repeat 3 50 0 4 1682 1364 209 34 7 chr3 143817953 143818247 -15781536 + MER2 DNA MER2_type 44 345 0 4 1682 209 159 0 22 chr3 143818444 143818489 -15781294 + GA-rich Low_complexity Low_complexity 2 45 0 4 1682 348 215 12 47 chr3 143818529 143818700 -15781083 + G-rich Low_complexity Low_complexity 5 169 0 4 1682 227 234 210 80 chr3 143818771 143818947 -15780836 + LTR50 LTR ERVL 70 268 -527 4 1682 475 301 121 60 chr3 143819523 143819788 -15779995 + B4 SINE B4 2 282 -10 4 1682 207 0 0 0 chr3 143819788 143819811 -15779972 + (CA)n Simple_repeat Simple_repeat 2 24 0 4 1682 720 265 55 0 chr3 143819832 143820013 -15779770 - B3 SINE B2 -25 191 1 4 1682 385 311 131 45 chr3 143820169 143820459 -15779324 + L1M5 LINE L1 2462 2776 -3370 4 1682 586 267 73 24 chr3 143822199 143822364 -15777419 + B3A SINE B2 1 173 -25 4 1682 288 331 50 13 chr3 143822465 143822624 -15777159 + HAL1 LINE L1 2343 2507 0 4 1682 21 71 0 0 chr3 143822652 143822694 -15777089 + AT_rich Low_complexity Low_complexity 1 42 0 4 1682 28 0 0 0 chr3 143822796 143822824 -15776959 + AT_rich Low_complexity Low_complexity 1 28 0 4 1682 21 0 0 0 chr3 143824072 143824093 -15775690 + AT_rich Low_complexity Low_complexity 1 21 0 4 1682 405 256 127 30 chr3 143824777 143824974 -15774809 - MIR SINE MIR -46 216 1 4 1682 219 204 0 0 chr3 143825074 143825128 -15774655 + GA-rich Low_complexity Low_complexity 1 54 0 4 1682 423 0 0 0 chr3 143825885 143825932 -15773851 + (TG)n Simple_repeat Simple_repeat 2 48 0 4 1682 419 272 0 64 chr3 143826466 143826576 -15773207 + RSINE1 SINE B4 39 141 -24 4 1682 33 25 0 0 chr3 143826638 143826678 -15773105 + AT_rich Low_complexity Low_complexity 1 40 0 4 1682 222 37 0 0 chr3 143827164 143827191 -15772592 + (TGAA)n Simple_repeat Simple_repeat 1 27 0 4 1682 284 64 21 0 chr3 143827422 143827469 -15772314 + (TTTG)n Simple_repeat Simple_repeat 2 49 0 4 1682 180 0 0 0 chr3 143827472 143827492 -15772291 + (T)n Simple_repeat Simple_repeat 1 20 0 4 1682 210 71 0 0 chr3 143827961 143827989 -15771794 + (CAA)n Simple_repeat Simple_repeat 3 30 0 4 1682 226 250 0 0 chr3 143829018 143829062 -15770721 + B3A SINE B2 89 132 -66 4 1682 732 23 0 0 chr3 143829072 143829158 -15770625 + (CA)n Simple_repeat Simple_repeat 1 86 0 4 1682 385 289 66 81 chr3 143830161 143830282 -15769501 - MIR SINE MIR -59 209 85 4 1682 1283 243 86 6 chr3 143830282 143830621 -15769162 - ORR1D2 LTR MaLR 0 370 5 4 1682 385 289 66 81 chr3 143830621 143830710 -15769073 - MIR SINE MIR -180 88 2 4 1682 311 195 12 49 chr3 143830710 143830787 -15768996 - MIR SINE MIR -95 167 94 4 1682 1507 63 11 0 chr3 143830791 143830982 -15768801 + B2_Mm2 SINE B2 2 194 -1 4 1682 2026 151 66 17 chr3 143831003 143831353 -15768430 - ORR1B2 LTR MaLR 0 367 1 4 1682 232 351 46 0 chr3 143832345 143832476 -15767307 + L2 LINE L2 2660 2796 -623 4 1682 1797 187 25 27 chr3 143832927 143833295 -15766488 - ORR1B2 LTR MaLR 0 367 1 4 1682 291 154 0 0 chr3 143833295 143833347 -15766436 - ORR1B2-int LTR MaLR 0 1509 1458 4 1682 5093 163 54 90 chr3 143833337 143834593 -15765190 - ORR1B2-int LTR MaLR -298 1211 1 4 1682 1898 140 5 69 chr3 143834597 143834973 -15764810 - ORR1B2 LTR MaLR -8 359 8 4 1682 658 269 37 11 chr3 143834999 143835187 -15764596 + ORR1E LTR MaLR 1 193 -166 4 1682 222 233 52 38 chr3 143836600 143836690 -15763093 - MIRm SINE MIR -30 178 82 4 1682 917 274 11 33 chr3 143838143 143838415 -15761368 - B4A SINE B4 -25 267 2 4 1682 222 174 0 0 chr3 143839030 143839076 -15760707 + (TTCA)n Simple_repeat Simple_repeat 1 46 0 4 1682 186 328 66 0 chr3 143839190 143839251 -15760532 - L2c LINE L2 -194 3193 3129 4 1682 450 325 63 22 chr3 143839385 143839653 -15760130 - B4A SINE B4 -13 279 1 4 1682 429 225 14 14 chr3 143840034 143840249 -15759534 + GA-rich Low_complexity Low_complexity 1 215 0 4 1682 1313 62 0 6 chr3 143840249 143840426 -15759357 + (GAA)n Simple_repeat Simple_repeat 2 177 0 4 1682 214 179 28 69 chr3 143840905 143840977 -15758806 + MIRc SINE MIR 47 115 -153 4 1682 212 245 32 21 chr3 143841474 143841555 -15758228 - MIRm SINE MIR -99 169 93 4 1682 722 42 0 11 chr3 143842263 143842358 -15757425 + (GGGA)n Simple_repeat Simple_repeat 3 96 0 4 1682 289 207 0 24 chr3 143843178 143843262 -15756521 + GA-rich Low_complexity Low_complexity 1 82 0 4 1682 672 48 0 0 chr3 143843271 143843355 -15756428 + (GGGA)n Simple_repeat Simple_repeat 3 86 0 4 1682 245 208 105 70 chr3 143843379 143843493 -15756290 + Lx6 LINE L1 7343 7460 0 4 1682 826 223 276 3 chr3 143843679 143843990 -15755793 - MTD LTR MaLR -12 407 12 4 1682 252 0 0 0 chr3 143843997 143844025 -15755758 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 4 1682 887 233 23 19 chr3 143844170 143844384 -15755399 + B3 SINE B2 1 215 -1 4 1682 412 259 35 9 chr3 143845170 143845283 -15754500 - PB1D10 SINE Alu -1 116 1 4 1682 813 244 118 52 chr3 143845340 143845629 -15754154 + ORR1E LTR MaLR 6 313 -46 4 1682 580 225 57 21 chr3 143845807 143845948 -15753835 + B1_Mur1 SINE Alu 3 148 -1 4 1682 486 0 0 0 chr3 143846041 143846095 -15753688 + (CA)n Simple_repeat Simple_repeat 2 55 0 4 1682 1433 78 10 10 chr3 143846571 143846765 -15753018 - B2_Mm2 SINE B2 0 195 2 4 1682 270 156 0 0 chr3 143846791 143846855 -15752928 + (TCTG)n Simple_repeat Simple_repeat 3 66 0 4 1682 645 257 72 6 chr3 143846887 143847067 -15752716 - B3A SINE B2 -6 192 1 4 1682 413 284 0 10 chr3 143847302 143847405 -15752378 + PB1D7 SINE Alu 8 109 -11 4 1682 243 79 0 0 chr3 143849484 143849522 -15750261 + (A)n Simple_repeat Simple_repeat 1 38 0 4 1682 261 0 0 0 chr3 143850699 143850728 -15749055 + (CAG)n Simple_repeat Simple_repeat 2 30 0 4 1682 21 57 0 0 chr3 143851500 143851535 -15748248 + AT_rich Low_complexity Low_complexity 1 35 0 4 1682 216 97 0 0 chr3 143851646 143851677 -15748106 + (T)n Simple_repeat Simple_repeat 1 31 0 4 1682 378 0 0 0 chr3 143854763 143854805 -15744978 + (TG)n Simple_repeat Simple_repeat 1 42 0 4 1682 498 86 0 0 chr3 143854805 143854886 -15744897 + (GA)n Simple_repeat Simple_repeat 2 82 0 4 1682 288 0 0 0 chr3 143855539 143855571 -15744212 + (TG)n Simple_repeat Simple_repeat 1 32 0 4 1682 777 22 0 0 chr3 143857786 143857877 -15741906 + (GA)n Simple_repeat Simple_repeat 1 91 0 4 1682 243 0 0 0 chr3 143862353 143862380 -15737403 + (A)n Simple_repeat Simple_repeat 1 27 0 4 1682 338 0 24 0 chr3 143863684 143863726 -15736057 + (TG)n Simple_repeat Simple_repeat 1 43 0 5 1682 25 65 0 0 chr3 143864188 143864234 -15735549 + AT_rich Low_complexity Low_complexity 1 46 0 5 1682 213 39 0 0 chr3 143865343 143865369 -15734414 + (TCC)n Simple_repeat Simple_repeat 1 26 0 5 1682 24 85 0 0 chr3 143865437 143865496 -15734287 + GC_rich Low_complexity Low_complexity 1 59 0 5 1682 274 343 0 0 chr3 143865606 143865708 -15734075 + G-rich Low_complexity Low_complexity 1 102 0 5 1682 486 0 0 0 chr3 143866066 143866120 -15733663 + (TC)n Simple_repeat Simple_repeat 1 54 0 5 1682 198 0 0 0 chr3 143867946 143867968 -15731815 + (T)n Simple_repeat Simple_repeat 1 22 0 5 1682 247 188 28 28 chr3 143868182 143868253 -15731530 + C-rich Low_complexity Low_complexity 4 74 0 5 1682 24 91 0 0 chr3 143868627 143868693 -15731090 + GC_rich Low_complexity Low_complexity 1 66 0 5 1682 24 0 0 0 chr3 143869900 143869924 -15729859 + AT_rich Low_complexity Low_complexity 1 24 0 5 1682 269 294 0 0 chr3 143871578 143871646 -15728137 + AluG_3 SINE Alu 153 220 -91 5 1682 559 313 95 10 chr3 143871709 143871909 -15727874 + ID_B1 SINE B4 1 217 -7 5 1682 22 0 0 0 chr3 143871996 143872018 -15727765 + AT_rich Low_complexity Low_complexity 1 22 0 5 1682 314 211 10 62 chr3 143872617 143872713 -15727070 - URR1B DNA MER1_type -8 217 127 5 1682 21 0 0 0 chr3 143873254 143873275 -15726508 + AT_rich Low_complexity Low_complexity 1 21 0 5 1682 749 240 0 28 chr3 143875367 143875547 -15724236 - B3A SINE B2 -22 176 2 5 1682 1607 209 156 16 chr3 143875645 143875729 -15724054 - RLTR20D LTR ERVK -7 561 479 5 1682 384 22 0 0 chr3 143875729 143875774 -15724009 + (CA)n Simple_repeat Simple_repeat 2 46 0 5 1682 1607 209 156 16 chr3 143875774 143876137 -15723646 - RLTR20D LTR ERVK -90 478 53 5 1682 667 256 96 39 chr3 143876456 143876794 -15722989 + MLT1E1A LTR MaLR 248 602 -78 5 1682 220 214 70 14 chr3 143877918 143877989 -15721794 - L2a LINE L2 0 3426 3352 5 1682 8162 83 2 2 chr3 143878169 143879669 -15720114 + L1_Mus3 LINE L1 5131 6629 -9 5 1682 237 275 75 0 chr3 143879839 143879919 -15719864 - L2a LINE L2 -559 2860 2775 5 1682 203 0 37 0 chr3 143880303 143880330 -15719453 + (CAAAC)n Simple_repeat Simple_repeat 2 29 0 5 1682 265 309 9 35 chr3 143880545 143880659 -15719124 + ID_B1 SINE B4 84 194 -30 5 1682 219 175 50 0 chr3 143880681 143880721 -15719062 + BC1_Mm scRNA scRNA 2 43 -109 5 1682 404 315 48 119 chr3 143880845 143880866 -15718917 + MER20 DNA MER1_type 3 21 -198 5 1682 276 0 68 0 chr3 143880866 143880910 -15718873 + (TTG)n Simple_repeat Simple_repeat 2 48 0 5 1682 404 315 48 119 chr3 143880910 143881057 -15718726 + MER20 DNA MER1_type 22 154 -65 5 1682 627 211 122 69 chr3 143881057 143881261 -15718522 + B3 SINE B2 2 216 0 5 1682 404 315 48 119 chr3 143881261 143881318 -15718465 + MER20 DNA MER1_type 155 213 -6 5 1682 180 0 0 0 chr3 143881520 143881540 -15718243 + (CAA)n Simple_repeat Simple_repeat 2 21 0 5 1682 613 264 15 36 chr3 143881672 143881868 -15717915 + B3A SINE B2 3 194 -4 5 1682 299 297 136 49 chr3 143882250 143882533 -15717250 + B4 SINE B4 2 274 -18 5 1682 265 291 23 11 chr3 143882680 143882767 -15717016 + MLT1J LTR MaLR 40 127 -385 5 1682 213 39 0 0 chr3 143883955 143883981 -15715802 + (GA)n Simple_repeat Simple_repeat 1 26 0 5 1682 195 309 0 0 chr3 143884875 143884930 -15714853 + MIRb SINE MIR 207 261 -7 5 1682 234 329 109 74 chr3 143885519 143885886 -15713897 + MLT1J LTR MaLR 178 557 -53 5 1682 324 0 0 0 chr3 143887765 143887801 -15711982 + (CA)n Simple_repeat Simple_repeat 2 37 0 5 1682 223 314 75 23 chr3 143889159 143889293 -15710490 - MIR SINE MIR -122 154 17 5 1682 314 258 48 40 chr3 143889327 143889452 -15710331 + MER102b DNA MER1_type 33 158 -183 5 1682 402 204 0 0 chr3 143889563 143889676 -15710107 + (TG)n Simple_repeat Simple_repeat 1 113 0 5 1682 757 270 82 41 chr3 143889723 143889993 -15709790 - B4A SINE B4 -11 281 1 5 1682 198 0 0 0 chr3 143890290 143890312 -15709471 + (CAAAAA)n Simple_repeat Simple_repeat 2 23 0 5 1682 852 184 0 20 chr3 143891186 143891336 -15708447 - B1_Mur3 SINE Alu -1 148 2 5 1682 1257 61 0 0 chr3 143891554 143891734 -15708049 + (CA)n Simple_repeat Simple_repeat 1 180 0 5 1682 1314 51 0 0 chr3 143891759 143891997 -15707786 + (CA)n Simple_repeat Simple_repeat 1 238 0 5 1682 264 259 0 0 chr3 143892467 143892521 -15707262 - AmnSINE1 SINE SINE -519 56 3 5 1682 682 219 113 15 chr3 143893364 143893568 -15706215 + B4A SINE B4 2 225 -67 5 1682 866 242 53 35 chr3 143893655 143893938 -15705845 + B4A SINE B4 1 288 -4 5 1682 24 77 0 0 chr3 143894079 143894131 -15705652 + AT_rich Low_complexity Low_complexity 1 52 0 5 1682 230 316 0 0 chr3 143894139 143894215 -15705568 + (TG)n Simple_repeat Simple_repeat 1 76 0 5 1682 545 285 7 7 chr3 143894219 143894371 -15705412 - RSINE1 SINE B4 -13 152 1 5 1682 362 310 60 26 chr3 143895188 143895420 -15704363 - MER113 DNA MER1_type -230 291 52 5 1682 1124 75 7 0 chr3 143896267 143896413 -15703370 - B1_Mus1 SINE Alu 0 148 2 5 1682 271 295 13 0 chr3 143899514 143899592 -15700191 - MIR SINE MIR -75 187 109 5 1682 723 279 184 10 chr3 143900074 143900379 -15699404 - MLT1A0 LTR MaLR -7 358 1 5 1682 393 297 51 56 chr3 143901208 143901404 -15698379 + MIR SINE MIR 6 200 -68 5 1682 262 325 70 0 chr3 143901510 143901669 -15698114 + MIR SINE MIR 28 202 -66 5 1682 2244 98 38 0 chr3 143902413 143902728 -15697055 - ORR1A2 LTR MaLR 0 327 1 5 1682 27 0 0 0 chr3 143904789 143904816 -15694967 + AT_rich Low_complexity Low_complexity 1 27 0 5 1682 2338 95 29 34 chr3 143905311 143905691 -15694092 + Lx LINE L1 6276 6653 -1 5 1682 343 191 130 60 chr3 143906515 143906615 -15693168 - B1_Mur2 SINE Alu -1 148 42 5 1682 224 0 0 157 chr3 143906618 143906726 -15693057 + (CTCTG)n Simple_repeat Simple_repeat 5 95 0 5 1682 253 152 0 61 chr3 143906727 143906776 -15693007 - PB1D9 SINE Alu -61 59 14 5 1682 250 325 0 12 chr3 143907120 143907204 -15692579 + B4A SINE B4 2 84 -208 5 1682 198 103 0 0 chr3 143907395 143907424 -15692359 + (CA)n Simple_repeat Simple_repeat 2 30 0 5 1682 432 317 0 0 chr3 143907832 143907952 -15691831 + ID_B1 SINE B4 82 201 -23 5 1682 270 317 145 37 chr3 143908932 143909201 -15690582 - MLT1B LTR MaLR 0 595 298 5 1682 273 312 11 17 chr3 143909416 143909533 -15690250 + L1MB3 LINE L1 5480 5596 -646 5 1682 631 262 54 11 chr3 143909544 143909729 -15690054 + B3A SINE B2 1 193 -5 5 1682 1211 61 0 0 chr3 143909736 143909883 -15689900 + B1_Mm SINE Alu 1 147 0 5 1682 34 0 0 0 chr3 143909883 143909917 -15689866 + AT_rich Low_complexity Low_complexity 1 34 0 5 1682 563 296 107 8 chr3 143909923 143910185 -15689598 + L1MB3 LINE L1 5601 5888 -295 5 1682 270 318 78 34 chr3 143910202 143910381 -15689402 + L1MB3 LINE L1 5952 6138 -36 5 1682 948 274 78 22 chr3 143910532 143910890 -15688893 - MTEb LTR MaLR -1 378 1 5 1682 559 282 103 23 chr3 143910915 143911089 -15688694 + MER3 DNA MER1_type 22 209 0 5 1682 820 199 23 6 chr3 143911403 143911580 -15688203 - MLT1B LTR MaLR -208 182 3 5 1682 30 0 0 0 chr3 143911930 143911960 -15687823 + AT_rich Low_complexity Low_complexity 1 30 0 5 1682 807 276 60 21 chr3 143912121 143912402 -15687381 + B4A SINE B4 1 292 0 5 1682 758 208 2 8 chr3 143912404 143912924 -15686859 + (CA)n Simple_repeat Simple_repeat 1 516 0 5 1682 707 212 5 7 chr3 143912957 143913408 -15686375 + (CA)n Simple_repeat Simple_repeat 1 450 0 5 1682 590 229 6 0 chr3 143913447 143913626 -15686157 + (CA)n Simple_repeat Simple_repeat 1 180 0 5 1682 602 216 6 0 chr3 143913644 143913815 -15685968 + (CA)n Simple_repeat Simple_repeat 2 173 0 5 1682 484 292 232 23 chr3 143913850 143914242 -15685541 - MLT1J LTR MaLR -4 508 35 5 1682 724 244 246 23 chr3 143914284 143914670 -15685113 + L1MC3 LINE L1 7013 7484 -301 5 1682 612 0 0 0 chr3 143914792 143914860 -15684923 + (TCTA)n Simple_repeat Simple_repeat 2 69 0 5 1682 950 113 14 14 chr3 143914887 143915030 -15684753 - B1_Mus2 SINE Alu 0 147 5 5 1683 351 0 0 0 chr3 143917113 143917152 -15682631 + (TAAAA)n Simple_repeat Simple_repeat 2 40 0 5 1683 528 308 107 19 chr3 143917728 143917933 -15681850 - ID_B1 SINE B4 0 224 2 5 1683 315 103 0 49 chr3 143917965 143918047 -15681736 + T-rich Low_complexity Low_complexity 2 79 0 5 1683 387 278 0 18 chr3 143919655 143919765 -15680018 - PB1D10 SINE Alu -9 108 1 5 1683 271 258 0 120 chr3 143919817 143919892 -15679891 - ID4 SINE ID -4 79 14 5 1683 493 226 87 0 chr3 143919914 143920029 -15679754 - PB1 SINE Alu -2 125 1 5 1683 396 0 0 0 chr3 143920624 143920668 -15679115 + (TG)n Simple_repeat Simple_repeat 1 44 0 5 1683 834 196 3 0 chr3 143925262 143925555 -15674228 + (CA)n Simple_repeat Simple_repeat 1 293 0 5 1683 2147 131 19 0 chr3 143926426 143926747 -15673036 + ORR1A2 LTR MaLR 1 327 0 5 1683 456 19 0 0 chr3 143927078 143927131 -15672652 + (TAGG)n Simple_repeat Simple_repeat 2 54 0 5 1683 1101 57 35 0 chr3 143927293 143927434 -15672349 + B1_Mm SINE Alu 2 147 0 5 1683 359 283 8 70 chr3 143928068 143928197 -15671586 - B1F SINE Alu -27 122 2 5 1683 309 51 0 0 chr3 143928266 143928305 -15671478 + (TCCC)n Simple_repeat Simple_repeat 4 42 0 5 1683 339 295 29 0 chr3 143928337 143928442 -15671341 - PB1D10 SINE Alu -8 109 2 5 1683 289 281 32 43 chr3 143928976 143929069 -15670714 - MLT1K LTR MaLR -176 419 328 5 1683 385 309 0 0 chr3 143930149 143930259 -15669524 - Tigger5 DNA MER2_type 0 2406 2297 5 1683 489 324 82 11 chr3 143930251 143930435 -15669348 - Tigger5 DNA MER2_type -2167 239 43 5 1683 789 330 45 8 chr3 143930442 143930794 -15668989 - MLT1A0 LTR MaLR 0 365 1 5 1683 720 236 68 77 chr3 143930969 143931308 -15668475 + Lx9 LINE L1 7299 7634 -10 5 1683 1444 144 18 0 chr3 143931809 143932031 -15667752 + URR1A DNA MER1_type 1 226 0 5 1683 240 324 28 9 chr3 143932234 143932343 -15667440 + L2c LINE L2 3275 3385 -2 5 1683 478 306 59 114 chr3 143932516 143932821 -15666962 + MLT2D LTR ERVL 77 354 -60 5 1683 212 317 29 10 chr3 143933175 143933277 -15666506 + L2c LINE L2 3031 3134 -253 5 1683 492 18 0 0 chr3 143933724 143933781 -15666002 + (TG)n Simple_repeat Simple_repeat 1 57 0 5 1683 204 40 0 0 chr3 143933781 143933806 -15665977 + (TGG)n Simple_repeat Simple_repeat 3 27 0 5 1683 320 247 0 38 chr3 143934145 143934225 -15665558 + B4 SINE B4 204 280 -12 6 1683 522 185 0 0 chr3 143934246 143934381 -15665402 + (CA)n Simple_repeat Simple_repeat 2 136 0 6 1683 234 0 0 0 chr3 143935119 143935145 -15664638 + (TG)n Simple_repeat Simple_repeat 1 26 0 6 1683 432 0 0 0 chr3 143935155 143935203 -15664580 + (CA)n Simple_repeat Simple_repeat 1 48 0 6 1683 292 301 61 17 chr3 143935212 143935327 -15664456 + B1F SINE Alu 29 148 -1 6 1683 259 336 71 18 chr3 143935333 143935445 -15664338 + B4 SINE B4 1 118 -174 6 1683 217 275 42 28 chr3 143935470 143935541 -15664242 + RSINE1 SINE B4 92 163 -2 6 1683 288 0 0 0 chr3 143935549 143935581 -15664202 + (CA)n Simple_repeat Simple_repeat 1 32 0 6 1683 399 238 0 0 chr3 143935636 143935716 -15664067 - ID4 SINE ID -3 80 1 6 1683 189 282 57 34 chr3 143935787 143935875 -15663908 - MIRb SINE MIR -48 220 131 6 1683 688 159 7 7 chr3 143938241 143938317 -15661466 + polypyrimidine Low_complexity Low_complexity 65 141 0 6 1683 1098 135 0 0 chr3 143938317 143938495 -15661288 + (TTC)n Simple_repeat Simple_repeat 1 178 0 6 1683 688 159 7 7 chr3 143938495 143938557 -15661226 + polypyrimidine Low_complexity Low_complexity 3 64 0 6 1683 400 341 17 17 chr3 143938939 143939118 -15660665 + CT-rich Low_complexity Low_complexity 2 180 0 6 1683 1606 239 89 17 chr3 143940026 143941190 -15658593 + L1MB7 LINE L1 4841 6176 -8 6 1683 271 275 11 21 chr3 143942757 143942850 -15656933 + Charlie4z DNA MER1_type 41 132 -35 6 1683 330 291 50 75 chr3 143943942 143944102 -15655681 - HAL1-3A_ME LINE L1 -419 2439 2284 6 1683 591 15 0 0 chr3 143944164 143944232 -15655551 + (TTCTCC)n Simple_repeat Simple_repeat 1 68 0 6 1683 694 291 111 24 chr3 143945174 143945427 -15654356 + B4A SINE B4 1 275 -17 6 1683 359 291 0 9 chr3 143945448 143945559 -15654224 + (CATATA)n Simple_repeat Simple_repeat 6 115 0 6 1683 277 176 13 13 chr3 143945692 143945767 -15654016 + GA-rich Low_complexity Low_complexity 2 76 0 6 1683 211 302 163 20 chr3 143945972 143946127 -15653656 + MIRc SINE MIR 41 208 0 6 1683 230 263 106 41 chr3 143946183 143946306 -15653477 - Tigger10 DNA Tigger -432 1411 1281 6 1683 23 0 0 0 chr3 143946419 143946442 -15653341 + AT_rich Low_complexity Low_complexity 1 23 0 6 1683 502 335 126 35 chr3 143946642 143947188 -15652595 - MLT1E2 LTR MaLR -14 613 2 6 1683 743 265 103 18 chr3 143947686 143947909 -15651874 + LTR81C LTR ERV1? 912 1153 0 6 1683 580 322 34 14 chr3 143947912 143948120 -15651663 - MIRb SINE MIR -42 226 15 6 1683 305 308 117 25 chr3 143948244 143948407 -15651376 - MLT1J1 LTR MaLR -201 243 66 6 1683 465 308 40 27 chr3 143949204 143949397 -15650386 + MIRb SINE MIR 35 241 -27 6 1683 400 326 35 21 chr3 143949877 143950018 -15649765 + RSINE1 SINE B4 2 144 -21 6 1683 24 32 0 0 chr3 143950029 143950060 -15649723 + AT_rich Low_complexity Low_complexity 1 31 0 6 1683 1092 265 52 106 chr3 143950843 143951231 -15648552 + MTE2a LTR MaLR 3 369 -10 6 1683 246 286 300 17 chr3 143951393 143951731 -15648052 + MER31A LTR ERV1 4 437 -48 6 1683 186 189 0 0 chr3 143951838 143951875 -15647908 + (CCA)n Simple_repeat Simple_repeat 1 37 0 6 1683 623 159 26 9 chr3 143951986 143952220 -15647563 + (TAGA)n Simple_repeat Simple_repeat 1 238 0 6 1683 755 284 56 22 chr3 143953339 143953606 -15646177 + B4A SINE B4 1 276 -16 6 1683 357 24 0 0 chr3 143953616 143953658 -15646125 + (CA)n Simple_repeat Simple_repeat 1 42 0 6 1683 2216 116 25 0 chr3 143954805 143955123 -15644660 + ORR1A2 LTR MaLR 1 326 -1 6 1683 257 128 0 21 chr3 143955426 143955474 -15644309 + (TG)n Simple_repeat Simple_repeat 2 48 0 6 1683 2019 206 34 8 chr3 143955474 143955860 -15643923 + MTD LTR MaLR 12 407 -12 6 1683 191 36 0 35 chr3 143955926 143955955 -15643828 + (GAAA)n Simple_repeat Simple_repeat 2 29 0 6 1683 463 252 19 0 chr3 143956076 143956179 -15643604 + PB1D10 SINE Alu 1 105 -12 6 1683 688 350 50 57 chr3 143956193 143956330 -15643453 + Tigger13a DNA MER2_type 185 319 -452 6 1683 5398 65 25 24 chr3 143956330 143957054 -15642729 + L1_Mus1 LINE L1 5843 6567 0 6 1683 688 350 50 57 chr3 143957054 143957353 -15642430 + Tigger13a DNA MER2_type 320 618 -153 6 1683 264 167 0 0 chr3 143957582 143957630 -15642153 + CT-rich Low_complexity Low_complexity 3 50 0 6 1683 2191 140 11 11 chr3 143958335 143958689 -15641094 - ORR1B1 LTR MaLR 0 394 41 6 1683 264 297 10 99 chr3 143958832 143958933 -15640850 - MTEa LTR MaLR -287 92 1 6 1683 1819 178 40 40 chr3 143958952 143959327 -15640456 - ORR1C2 LTR MaLR 0 384 10 6 1683 449 341 46 29 chr3 143960562 143960737 -15639046 + L1M5 LINE L1 5295 5472 -652 6 1683 875 304 19 0 chr3 143960770 143960977 -15638806 - B4 SINE B4 0 292 82 6 1683 477 50 0 0 chr3 143961011 143961071 -15638712 + (TGG)n Simple_repeat Simple_repeat 1 60 0 6 1683 223 204 73 18 chr3 143961094 143961149 -15638634 - B4 SINE B4 -207 85 28 6 1683 210 268 124 74 chr3 143961342 143961463 -15638320 - L2c LINE L2 -160 3227 3101 6 1683 468 337 49 73 chr3 143961852 143962257 -15637526 - L2a LINE L2 -139 3287 2853 6 1683 335 287 64 23 chr3 143962297 143962468 -15637315 - L2a LINE L2 -1694 1725 1548 6 1683 573 138 0 0 chr3 143963759 143963853 -15635930 + (TG)n Simple_repeat Simple_repeat 2 95 0 6 1683 353 303 84 74 chr3 143963860 143963918 -15635865 - B4 SINE B4 0 292 233 6 1683 312 259 80 112 chr3 143963918 143963945 -15635838 - B3A SINE B2 -16 182 158 6 1683 285 98 0 0 chr3 143963945 143963986 -15635797 + (TG)n Simple_repeat Simple_repeat 1 41 0 6 1683 312 259 80 112 chr3 143963986 143964145 -15635638 - B3A SINE B2 -41 157 2 6 1683 767 244 15 2 chr3 143964145 143964303 -15635480 - ID_B1 SINE B4 -60 232 70 6 1683 616 331 6 11 chr3 143964313 143964490 -15635293 - ID_B1 SINE B4 -47 177 2 6 1683 3380 35 5 2 chr3 143964599 143964994 -15634789 - MTA_Mm LTR MaLR 0 396 1 6 1683 798 11 0 0 chr3 143965129 143965220 -15634563 + (TTCTC)n Simple_repeat Simple_repeat 1 91 0 6 1683 214 307 0 74 chr3 143965410 143965444 -15634339 - MIR SINE MIR -71 191 159 6 1683 432 0 0 0 chr3 143965444 143965492 -15634291 + (TG)n Simple_repeat Simple_repeat 2 49 0 6 1683 214 307 0 74 chr3 143965492 143965538 -15634245 - MIR SINE MIR -104 158 117 6 1683 936 282 204 21 chr3 143965574 143965961 -15633822 - MLT1D LTR MaLR -3 502 45 6 1683 459 0 0 0 chr3 143965993 143966044 -15633739 + (CA)n Simple_repeat Simple_repeat 2 52 0 6 1683 437 239 173 30 chr3 143966351 143966519 -15633264 - B3A SINE B2 -6 192 1 6 1683 21 36 0 0 chr3 143967822 143967850 -15631933 + AT_rich Low_complexity Low_complexity 1 28 0 6 1683 472 296 53 0 chr3 143968226 143968358 -15631425 + RSINE1 SINE B4 3 141 -24 6 1683 312 27 0 0 chr3 143968358 143968395 -15631388 + (CA)n Simple_repeat Simple_repeat 1 37 0 6 1683 526 237 8 26 chr3 143968592 143968709 -15631074 + B4 SINE B4 1 115 -177 6 1683 1348 189 68 37 chr3 143968771 143969136 -15630647 - MTD LTR MaLR -13 394 1 6 1683 469 303 58 19 chr3 143969136 143969287 -15630496 + B4 SINE B4 133 289 -3 6 1683 180 0 0 0 chr3 143969725 143969745 -15630038 + (CA)n Simple_repeat Simple_repeat 2 21 0 6 1683 749 41 0 10 chr3 143969780 143969878 -15629905 + (TG)n Simple_repeat Simple_repeat 2 98 0 6 1683 526 270 57 21 chr3 143969880 143970020 -15629763 - B3A SINE B2 -50 148 4 6 1683 683 132 19 48 chr3 143970920 143971191 -15628592 + (TG)n Simple_repeat Simple_repeat 1 263 0 6 1683 408 301 100 10 chr3 143971220 143971509 -15628274 + L1MB7 LINE L1 4952 5266 -880 6 1683 273 119 17 8 chr3 143971521 143971580 -15628203 - L1M LINE L1 -804 5374 5318 6 1683 326 317 72 0 chr3 143971640 143971779 -15628004 + L1MB7 LINE L1 5742 5889 -289 6 1683 261 295 77 8 chr3 143971783 143971913 -15627870 + ID_B1 SINE B4 85 223 -1 6 1683 560 125 0 10 chr3 143971913 143972010 -15627773 + (GGGA)n Simple_repeat Simple_repeat 2 97 0 6 1683 804 307 25 3 chr3 143972014 143972298 -15627485 + L1MB7 LINE L1 5881 6170 -14 6 1683 468 0 0 0 chr3 143973451 143973503 -15626280 + (CA)n Simple_repeat Simple_repeat 2 53 0 6 1683 207 0 0 0 chr3 143973503 143973525 -15626258 + (CG)n Simple_repeat Simple_repeat 2 24 0 6 1683 522 211 0 9 chr3 143973920 143974025 -15625758 - PB1D10 SINE Alu -2 115 12 6 1683 323 184 194 67 chr3 143974025 143974047 -15625736 - B4A SINE B4 -60 201 82 6 1683 2431 208 183 31 chr3 143975344 143976035 -15623748 + RMER1A Other Other 15 876 -154 6 1683 201 74 0 0 chr3 143976035 143976062 -15623721 + (TGG)n Simple_repeat Simple_repeat 2 28 0 6 1683 2431 174 77 14 chr3 143976062 143976085 -15623698 + RMER1A Other Other 877 896 -134 6 1683 938 288 32 11 chr3 143976745 143977029 -15622754 + B4 SINE B4 1 290 -2 6 1683 181 264 75 65 chr3 143977780 143977873 -15621910 - MIR3 SINE MIR -22 186 93 6 1683 369 0 0 0 chr3 143977934 143977975 -15621808 + (CA)n Simple_repeat Simple_repeat 2 42 0 6 1683 432 0 0 0 chr3 143978133 143978181 -15621602 + (TG)n Simple_repeat Simple_repeat 1 48 0 6 1683 670 276 25 35 chr3 143978191 143978394 -15621389 - B4A SINE B4 -90 202 2 6 1683 542 322 11 38 chr3 143978540 143978724 -15621059 + B4A SINE B4 1 179 -113 6 1683 693 342 81 27 chr3 143979324 143979732 -15620051 - MLT1H1 LTR MaLR -1 554 125 6 1683 252 0 0 0 chr3 143980884 143980912 -15618871 + (TG)n Simple_repeat Simple_repeat 2 29 0 6 1683 286 353 55 44 chr3 143982106 143982287 -15617496 - L3 LINE CR1 -1187 3302 3120 6 1683 198 0 0 0 chr3 143983150 143983172 -15616611 + (TC)n Simple_repeat Simple_repeat 1 22 0 6 1683 288 0 0 0 chr3 143983172 143983203 -15616580 + (CA)n Simple_repeat Simple_repeat 1 32 0 6 1683 351 0 0 0 chr3 143984712 143984751 -15615032 + (A)n Simple_repeat Simple_repeat 1 39 0 6 1683 693 311 77 80 chr3 143985093 143985443 -15614340 - MLT1L LTR MaLR -221 389 41 6 1683 486 211 33 50 chr3 143986532 143986652 -15613131 - MLT1J1 LTR MaLR -326 118 1 6 1683 260 390 77 24 chr3 143987061 143987531 -15612252 - L2a LINE L2 -25 3401 2858 6 1683 380 254 109 29 chr3 143987587 143987725 -15612058 - MLT1C LTR MaLR -51 416 268 7 1683 375 257 55 9 chr3 143987795 143987905 -15611878 - MLT1C LTR MaLR -291 176 62 7 1683 617 291 173 19 chr3 143988070 143988336 -15611447 + RMER20B LTR ERVK 97 403 -224 7 1683 497 317 0 0 chr3 143988665 143988769 -15611014 + RSINE1 SINE B4 11 114 -51 7 1683 414 79 0 0 chr3 143988777 143988840 -15610943 + (CAGA)n Simple_repeat Simple_repeat 2 64 0 7 1683 256 172 17 33 chr3 143988845 143988905 -15610878 + (CAGAGA)n Simple_repeat Simple_repeat 2 60 0 7 1683 320 292 43 111 chr3 143988959 143989010 -15610773 + L1MA4 LINE L1 5700 5753 -1720 7 1683 321 280 90 36 chr3 143989010 143989121 -15610662 + PB1D10 SINE Alu 1 117 0 7 1683 501 283 33 28 chr3 143989121 143989341 -15610442 + L1MA4 LINE L1 5754 5996 -301 7 1683 2131 150 70 21 chr3 143989855 143990229 -15609554 - ORR1B1 LTR MaLR 0 394 3 7 1683 183 342 32 64 chr3 143993027 143993152 -15606631 - MIRb SINE MIR -22 246 126 7 1683 221 237 66 33 chr3 143993562 143993623 -15606160 + L4 LINE RTE 1191 1253 -776 7 1683 504 0 0 0 chr3 143994389 143994445 -15605338 + (GA)n Simple_repeat Simple_repeat 2 57 0 7 1683 616 261 9 11 chr3 143994675 143994817 -15604966 + ID_B1 SINE B4 86 222 -2 7 1683 1098 81 23 11 chr3 143994817 143994992 -15604791 + (GGGA)n Simple_repeat Simple_repeat 2 178 0 7 1683 540 0 0 0 chr3 143995234 143995294 -15604489 + (GA)n Simple_repeat Simple_repeat 1 60 0 7 1683 400 111 28 0 chr3 143995642 143995714 -15604069 + (TTG)n Simple_repeat Simple_repeat 2 75 0 7 1683 856 156 0 41 chr3 143997596 143997743 -15602040 - B1_Mur3 SINE Alu 0 149 9 7 1683 315 286 61 67 chr3 143997611 143997776 -15602007 - B4A SINE B4 -74 218 55 7 1683 237 224 89 38 chr3 143998124 143998203 -15601580 + ID4_ SINE ID 1 83 0 7 1683 604 295 80 5 chr3 143998713 143998914 -15600869 + ID_B1 SINE B4 2 217 -7 7 1683 393 22 0 0 chr3 143999954 144000000 -15599783 + (GGGA)n Simple_repeat Simple_repeat 1 46 0 7 1683 2548 137 45 0 chr3 144000992 144001393 -15598390 - MTC LTR MaLR -2 419 1 1 1683 878 144 24 18 chr3 144001393 144001563 -15598220 - MTC-int LTR MaLR 0 1258 1088 1 1683 532 168 20 50 chr3 144001563 144001663 -15598120 + B3 SINE B2 1 97 -119 2 1683 3267 201 61 103 chr3 144001709 144001856 -15597927 - MTC-int LTR MaLR -110 988 887 1 1683 1185 120 0 50 chr3 144001856 144002058 -15597725 - B2_Mm2 SINE B2 -2 193 2 3 1683 3267 201 61 103 chr3 144002058 144002919 -15596864 - MTC-int LTR MaLR -212 886 22 1 1683 2224 165 50 0 chr3 144002945 144003344 -15596439 - MTC LTR MaLR -2 419 1 1 1683 372 320 77 29 chr3 144003987 144004263 -15595520 + L1MA5 LINE L1 5730 6013 -1683 4 1683 508 229 147 0 chr3 144004439 144004548 -15595235 + RSINE1 SINE B4 3 127 -38 5 1683 441 0 0 0 chr3 144004572 144004621 -15595162 + (CA)n Simple_repeat Simple_repeat 1 49 0 6 1683 22 35 0 0 chr3 144004661 144004690 -15595093 + AT_rich Low_complexity Low_complexity 1 29 0 7 1683 1472 62 5 0 chr3 144004690 144004885 -15594898 - L1Md_F2 LINE L1 0 6582 6387 8 1683 2580 317 73 26 chr3 144004893 144005983 -15593800 + Lx8 LINE L1 6186 7327 -146 9 1683 510 61 0 0 chr3 144005983 144006049 -15593734 + (CA)n Simple_repeat Simple_repeat 2 67 0 1 1683 2580 317 73 26 chr3 144006049 144006065 -15593718 + Lx8 LINE L1 7328 7343 -130 9 1683 443 236 7 0 chr3 144006145 144006285 -15593498 + (TG)n Simple_repeat Simple_repeat 1 141 0 1 1683 315 250 97 0 chr3 144007321 144007393 -15592390 + BC1_Mm scRNA scRNA 7 85 -67 1 1683 1123 260 23 162 chr3 144007659 144008091 -15591692 - MTE2a LTR MaLR 0 379 8 1 1683 180 195 122 0 chr3 144008952 144008993 -15590790 - MIRm SINE MIR -114 162 117 1 1683 330 304 35 26 chr3 144009165 144009280 -15590503 + ID_B1 SINE B4 18 133 -91 1 1683 249 312 0 15 chr3 144009341 144009406 -15590377 - MLT1H2 LTR MaLR -57 432 369 1 1683 239 220 0 0 chr3 144009497 144009547 -15590236 + C-rich Low_complexity Low_complexity 4 53 0 1 1683 423 0 0 0 chr3 144010219 144010266 -15589517 + (TG)n Simple_repeat Simple_repeat 1 47 0 1 1683 294 308 199 12 chr3 144010374 144010535 -15589248 - L2a LINE L2 -252 3174 2984 1 1683 28 48 0 0 chr3 144010949 144010991 -15588792 + AT_rich Low_complexity Low_complexity 1 42 0 2 1683 220 299 17 70 chr3 144012273 144012388 -15587395 + MIRm SINE MIR 29 137 -139 2 1683 1271 73 50 11 chr3 144013673 144013852 -15585931 - B2_Mm2 SINE B2 -5 190 5 2 1683 345 170 278 19 chr3 144014103 144014211 -15585572 - RMER15 LTR ERVL -72 503 368 2 1683 228 236 167 0 chr3 144014547 144014619 -15585164 - PB1 SINE Alu -8 119 36 2 1683 1174 98 37 42 chr3 144014738 144014929 -15584854 + B2_Mm1t SINE B2 1 190 -3 2 1683 338 325 30 38 chr3 144015140 144015271 -15584512 - L2b LINE L2 -21 3354 3225 2 1683 182 264 50 100 chr3 144015707 144015787 -15583996 - L3 LINE CR1 -2718 1771 1696 2 1683 318 211 0 0 chr3 144018593 144018650 -15581133 - MER5A1 DNA MER1_type -1 165 109 2 1683 1067 290 14 44 chr3 144018678 144018974 -15580809 - B4A SINE B4 0 292 6 2 1683 225 154 0 0 chr3 144019855 144019894 -15579889 + T-rich Low_complexity Low_complexity 1 39 0 3 1683 223 374 76 10 chr3 144022772 144022969 -15576814 + L2c LINE L2 3177 3386 -1 3 1683 516 288 35 18 chr3 144023063 144023233 -15576550 - MTE2b LTR MaLR -72 307 135 3 1683 1057 209 11 0 chr3 144023468 144023655 -15576128 + B3 SINE B2 1 189 -27 3 1683 288 0 0 0 chr3 144023656 144023688 -15576095 + (CA)n Simple_repeat Simple_repeat 2 33 0 3 1683 458 274 113 0 chr3 144023688 144023812 -15575971 - RSINE1 SINE B4 -25 140 3 3 1683 357 320 148 0 chr3 144024069 144024197 -15575586 + B3 SINE B2 41 187 -29 3 1683 223 85 43 0 chr3 144024197 144024244 -15575539 + (CA)n Simple_repeat Simple_repeat 2 50 0 3 1683 285 274 33 77 chr3 144024541 144024632 -15575151 + MT2B LTR ERVL 155 241 -360 3 1683 501 223 190 0 chr3 144024554 144024675 -15575108 + B1_Mur2 SINE Alu 6 149 0 3 1683 1063 159 59 15 chr3 144026690 144026894 -15572889 + B3 SINE B2 4 216 0 4 1683 203 229 42 0 chr3 144026899 144026947 -15572836 + GA-rich Low_complexity Low_complexity 5 54 0 4 1683 216 0 0 0 chr3 144026947 144026971 -15572812 + (GGGA)n Simple_repeat Simple_repeat 4 27 0 4 1683 270 273 0 0 chr3 144027578 144027634 -15572149 + (CGTG)n Simple_repeat Simple_repeat 1 56 0 4 1683 859 231 132 104 chr3 144027634 144027914 -15571869 - B4 SINE B4 0 292 5 4 1683 203 307 0 26 chr3 144027914 144027934 -15571849 + (TATG)n Simple_repeat Simple_repeat 2 20 0 4 1683 587 130 10 0 chr3 144029258 144029358 -15570425 + (TCCC)n Simple_repeat Simple_repeat 1 101 0 4 1683 393 188 12 36 chr3 144029364 144029447 -15570336 - PB1D9 SINE Alu -16 104 24 4 1683 288 0 0 0 chr3 144029920 144029952 -15569831 + (A)n Simple_repeat Simple_repeat 1 32 0 4 1683 189 0 0 0 chr3 144030667 144030688 -15569095 + (TAAA)n Simple_repeat Simple_repeat 1 21 0 4 1683 235 256 33 40 chr3 144031624 144031707 -15568076 + MIR SINE MIR 47 133 -135 5 1683 1230 272 121 19 chr3 144032219 144032691 -15567092 + MLT2B1 LTR ERVL 1 520 0 5 1683 2275 186 106 12 chr3 144035503 144036004 -15563779 + RMER1B Other Other 508 1055 -11 5 1683 210 71 0 0 chr3 144036006 144036034 -15563749 + (GGA)n Simple_repeat Simple_repeat 3 30 0 5 1683 1006 337 35 35 chr3 144036760 144037184 -15562599 - LTR16A LTR ERVL -10 441 18 5 1683 570 286 16 98 chr3 144037209 144037403 -15562380 + MIRb SINE MIR 68 245 -23 5 1683 274 340 9 0 chr3 144037850 144037956 -15561827 + GA-rich Low_complexity Low_complexity 1 107 0 5 1683 549 273 7 17 chr3 144037991 144038145 -15561638 + B1F2 SINE Alu 1 150 0 5 1683 210 271 0 0 chr3 144038171 144038219 -15561564 + RSINE1 SINE B4 93 140 -25 5 1683 288 0 0 0 chr3 144038219 144038251 -15561532 + (CA)n Simple_repeat Simple_repeat 2 33 0 5 1683 259 121 155 0 chr3 144038367 144038425 -15561358 + Lx5 LINE L1 6984 7050 0 6 1683 188 239 87 0 chr3 144038822 144038868 -15560915 - L2a LINE L2 -3 3423 3374 6 1683 485 204 0 7 chr3 144043649 144043792 -15555991 + CT-rich Low_complexity Low_complexity 1 142 0 6 1683 191 61 30 0 chr3 144044381 144044414 -15555369 + (CCCCCA)n Simple_repeat Simple_repeat 6 39 0 6 1683 529 219 26 0 chr3 144044735 144044849 -15554934 + MER53 DNA hAT 77 193 0 6 1683 22 56 0 0 chr3 144045280 144045316 -15554467 + AT_rich Low_complexity Low_complexity 1 36 0 6 1683 452 175 47 109 chr3 144045687 144045815 -15553968 + MT2B LTR ERVL 145 264 -337 6 1683 1143 49 0 0 chr3 144045707 144045850 -15553933 + B1_Mus1 SINE Alu 6 148 0 6 1683 524 258 76 70 chr3 144045711 144045882 -15553901 + B4 SINE B4 94 265 -27 6 1683 234 0 0 0 chr3 144046594 144046620 -15553163 + (CA)n Simple_repeat Simple_repeat 1 26 0 6 1684 680 178 103 7 chr3 144048286 144048422 -15551361 + B1_Mur2 SINE Alu 1 149 0 7 1684 288 154 38 25 chr3 144048547 144048627 -15551156 + C-rich Low_complexity Low_complexity 3 83 0 7 1684 331 260 39 11 chr3 144048833 144048953 -15550830 + ID4_ SINE ID 1 124 -28 7 1684 903 257 0 28 chr3 144048961 144049173 -15550610 + B3 SINE B2 1 206 -10 7 1684 656 246 64 39 chr3 144050000 144050026 -15549757 - B3 SINE B2 -5 211 189 7 1684 450 0 0 0 chr3 144050026 144050076 -15549707 + (GA)n Simple_repeat Simple_repeat 1 50 0 7 1684 656 246 64 39 chr3 144050076 144050252 -15549531 - B3 SINE B2 -28 188 4 7 1684 207 156 0 0 chr3 144050361 144050393 -15549390 + (TGAG)n Simple_repeat Simple_repeat 1 32 0 7 1684 1375 171 208 13 chr3 144050409 144050722 -15549061 + ORR1D1 LTR MaLR 1 374 0 7 1684 234 258 94 62 chr3 144050795 144050923 -15548860 + MIR SINE MIR 39 170 -92 7 1684 706 162 95 7 chr3 144051359 144051496 -15548287 + B1_Mur2 SINE Alu 1 149 0 7 1684 579 29 0 0 chr3 144051505 144051574 -15548209 + (GGAA)n Simple_repeat Simple_repeat 3 71 0 8 1684 235 292 142 0 chr3 144051637 144051757 -15548026 + MIRc SINE MIR 57 193 -75 8 1684 341 304 133 23 chr3 144051771 144051899 -15547884 + RSINE1 SINE B4 5 146 -19 8 1684 225 83 0 0 chr3 144051921 144051957 -15547826 + (GA)n Simple_repeat Simple_repeat 2 37 0 8 1684 237 222 80 44 chr3 144051957 144052070 -15547713 + Lx8 LINE L1 7356 7472 -1 8 1684 263 242 302 16 chr3 144052073 144052086 -15547697 + B4A SINE B4 80 152 -140 8 1684 553 170 20 0 chr3 144052086 144052186 -15547597 + PB1D9 SINE Alu 14 115 -5 8 1684 263 242 302 16 chr3 144052186 144052199 -15547584 + B4A SINE B4 153 241 -51 8 1684 183 42 0 0 chr3 144052993 144053017 -15546766 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 8 1684 766 196 59 27 chr3 144053392 144053573 -15546210 - B3A SINE B2 -8 187 1 8 1684 1993 94 14 14 chr3 144054598 144054890 -15544893 - ORR1A4 LTR MaLR -37 292 1 8 1684 474 308 7 37 chr3 144054890 144055023 -15544760 + B4A SINE B4 100 228 -64 9 1684 529 151 198 0 chr3 144055038 144055144 -15544639 + B1_Mur1 SINE Alu 21 147 -2 9 1684 180 0 0 0 chr3 144055144 144055164 -15544619 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 9 1684 185 360 26 13 chr3 144055312 144055388 -15544395 + MIRm SINE MIR 159 235 -41 9 1684 426 39 0 0 chr3 144055628 144055680 -15544103 + (TTA)n Simple_repeat Simple_repeat 1 52 0 9 1684 2433 56 7 3 chr3 144055680 144055983 -15543800 - L1_Mus3 LINE L1 -16 6622 6319 9 1684 232 227 0 0 chr3 144056123 144056167 -15543616 - B1F SINE Alu -24 125 82 9 1684 346 276 106 68 chr3 144057262 144057394 -15542389 + B4 SINE B4 118 254 -38 9 1684 432 0 0 0 chr3 144057423 144057471 -15542312 + (CA)n Simple_repeat Simple_repeat 1 48 0 9 1684 22 35 0 0 chr3 144058664 144058693 -15541090 + AT_rich Low_complexity Low_complexity 1 29 0 9 1684 195 42 0 0 chr3 144060565 144060589 -15539194 + (CA)n Simple_repeat Simple_repeat 1 24 0 1 1684 252 250 111 0 chr3 144061026 144061098 -15538685 - ID2 SINE ID -2 81 2 1 1684 226 289 78 49 chr3 144063360 144063462 -15536321 + MIRm SINE MIR 2 106 -170 1 1684 269 294 114 38 chr3 144063479 144063610 -15536173 - MIRb SINE MIR -83 185 45 1 1684 216 0 0 0 chr3 144065612 144065636 -15534147 + (A)n Simple_repeat Simple_repeat 1 24 0 1 1684 587 264 56 0 chr3 144065640 144065765 -15534018 - ID_B1 SINE B4 -13 211 80 1 1684 406 62 30 15 chr3 144065929 144065995 -15533788 + (TTCCC)n Simple_repeat Simple_repeat 1 67 0 1 1684 309 380 33 7 chr3 144065995 144066146 -15533637 - HAL1-3A_ME LINE L1 -419 2439 2285 1 1684 649 111 24 87 chr3 144066157 144066540 -15533243 + CT-rich Low_complexity Low_complexity 1 358 0 1 1684 760 175 16 0 chr3 144066550 144066676 -15533107 - B1_Mur1 SINE Alu -1 148 21 1 1684 2028 157 119 5 chr3 144066960 144067338 -15532445 - MTC LTR MaLR 0 421 1 1 1684 189 0 0 0 chr3 144067686 144067707 -15532076 + (TCTG)n Simple_repeat Simple_repeat 2 22 0 1 1684 470 344 32 6 chr3 144067719 144067747 -15532036 - RSINE1 SINE B4 0 165 138 1 1684 318 50 0 0 chr3 144067747 144067787 -15531996 + (TG)n Simple_repeat Simple_repeat 1 40 0 1 1684 470 344 32 6 chr3 144067787 144067916 -15531867 - RSINE1 SINE B4 -28 137 5 1 1684 24 32 0 0 chr3 144068672 144068703 -15531080 + AT_rich Low_complexity Low_complexity 1 31 0 1 1684 597 205 0 17 chr3 144069369 144069488 -15530295 + PB1D10 SINE Alu 1 117 0 1 1684 1555 170 32 171 chr3 144070636 144071069 -15528714 + ORR1D1 LTR MaLR 1 373 -1 1 1684 300 207 138 0 chr3 144071523 144071610 -15528173 + L1MB3 LINE L1 5877 5975 -208 1 1684 1240 253 78 15 chr3 144071635 144072012 -15527771 - BGLII_B LTR ERVK -9 432 47 1 1684 602 104 10 0 chr3 144072273 144072369 -15527414 + (GA)n Simple_repeat Simple_repeat 2 98 0 1 1684 256 232 0 18 chr3 144072372 144072429 -15527354 - BGLII_B LTR ERVK -384 57 2 1 1684 830 170 21 62 chr3 144072483 144072677 -15527106 + B2_Mm2 SINE B2 2 187 -8 1 1684 286 262 36 0 chr3 144072685 144072782 -15527001 + L1MB3 LINE L1 6041 6141 -42 1 1684 603 276 30 0 chr3 144073461 144073595 -15526188 + RSINE1 SINE B4 4 141 -24 1 1684 339 44 0 0 chr3 144073597 144073642 -15526141 + (CA)n Simple_repeat Simple_repeat 1 45 0 1 1684 963 262 32 88 chr3 144074623 144074962 -15524821 - MER121 Unknown Unknown -84 328 9 1 1684 774 32 0 0 chr3 144075242 144075335 -15524448 + (TC)n Simple_repeat Simple_repeat 2 94 0 1 1684 876 20 0 0 chr3 144075367 144075469 -15524314 + (GGGGA)n Simple_repeat Simple_repeat 1 102 0 1 1684 635 107 235 0 chr3 144075473 144075622 -15524161 - RMER17C LTR ERVK -225 185 2 1 1684 574 294 161 28 chr3 144076683 144076747 -15523036 - B4A SINE B4 -2 290 229 1 1684 598 274 42 52 chr3 144076747 144076959 -15522824 - B3 SINE B2 -5 211 2 1 1684 574 294 161 28 chr3 144076959 144077149 -15522634 - B4A SINE B4 -64 228 2 1 1684 472 367 58 49 chr3 144077776 144078105 -15521678 + ORR1E LTR MaLR 2 333 -26 1 1684 237 159 0 0 chr3 144078339 144078383 -15521400 + CT-rich Low_complexity Low_complexity 1 44 0 1 1684 693 152 18 0 chr3 144078402 144078514 -15521269 - B1_Mur4 SINE Alu -23 127 14 1 1684 410 184 8 149 chr3 144078409 144078530 -15521253 - MT2B LTR ERVL -332 269 166 1 1684 696 173 76 35 chr3 144078573 144078588 -15521195 - B1_Mur4 SINE Alu 0 150 138 1 1684 189 74 0 0 chr3 144078588 144078615 -15521168 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 1684 696 173 76 35 chr3 144078615 144078743 -15521040 - B1_Mur4 SINE Alu -13 137 1 1 1684 456 226 29 10 chr3 144078996 144079099 -15520684 + PB1 SINE Alu 21 125 -2 1 1684 259 214 34 0 chr3 144079110 144079199 -15520584 + GA-rich Low_complexity Low_complexity 3 94 0 1 1684 222 261 0 0 chr3 144079365 144079411 -15520372 + A-rich Low_complexity Low_complexity 1 46 0 1 1684 1122 209 88 64 chr3 144079440 144079782 -15520001 - MTD LTR MaLR -59 360 11 1 1684 1283 27 7 0 chr3 144079799 144079945 -15519838 + B1_Mm SINE Alu 1 147 0 1 1684 29 47 0 0 chr3 144080236 144080279 -15519504 + AT_rich Low_complexity Low_complexity 1 43 0 1 1684 1427 181 133 45 chr3 144080279 144080655 -15519128 - Lx5 LINE L1 -7 7043 6635 1 1684 1950 148 148 83 chr3 144080733 144081152 -15518631 + RLTR41 LTR ERV1 1 446 0 1 1684 363 317 0 0 chr3 144082265 144082366 -15517417 - B1_Mur3 SINE Alu -47 102 2 1 1684 848 206 7 0 chr3 144083440 144083586 -15516197 - B1_Mur3 SINE Alu 0 149 3 1 1684 495 244 71 82 chr3 144083726 144083896 -15515887 - B4 SINE B4 0 292 125 1 1684 217 265 20 0 chr3 144083917 144083966 -15515817 - B4 SINE B4 -219 73 24 1 1684 353 287 12 133 chr3 144083967 144084140 -15515643 - MLT1E2 LTR MaLR -438 189 38 1 1684 408 20 0 0 chr3 144084216 144084265 -15515518 + (CA)n Simple_repeat Simple_repeat 1 49 0 1 1684 310 309 0 0 chr3 144084582 144084679 -15515104 + C-rich Low_complexity Low_complexity 1 97 0 1 1684 330 211 65 22 chr3 144085499 144085591 -15514192 - RMER30 DNA MER1_type -1 201 106 1 1684 499 177 0 40 chr3 144085592 144085692 -15514091 + B1_Mus2 SINE Alu 50 145 -2 1 1684 203 0 37 0 chr3 144085696 144085723 -15514060 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 1 1684 568 154 214 0 chr3 144085782 144085899 -15513884 - B1_Mur2 SINE Alu -5 144 3 1 1684 300 271 43 0 chr3 144085903 144085973 -15513810 - RMER30 DNA MER1_type -128 74 2 1 1684 200 358 25 0 chr3 144086101 144086182 -15513601 - MIRb SINE MIR -155 113 31 1 1684 1205 68 0 13 chr3 144086254 144086403 -15513380 - B1_Mus2 SINE Alu 0 147 1 1 1684 3543 32 0 132 chr3 144086441 144086943 -15512840 - RLTR10C LTR ERVK 0 436 1 1 1684 403 226 143 21 chr3 144087295 144087363 -15512420 + Lx8 LINE L1 6779 6849 -624 1 1684 216 0 0 0 chr3 144087363 144087387 -15512396 + (TG)n Simple_repeat Simple_repeat 1 24 0 1 1684 403 226 143 21 chr3 144087387 144087458 -15512325 + Lx8 LINE L1 6850 6934 -539 1 1684 723 301 87 65 chr3 144087631 144087908 -15511875 + B4A SINE B4 10 292 0 1 1684 1329 91 16 5 chr3 144089402 144089589 -15510194 - B2_Mm2 SINE B2 -5 190 2 1 1684 180 281 70 0 chr3 144090851 144090908 -15508875 + MIRc SINE MIR 4 64 -204 1 1684 309 292 0 14 chr3 144092223 144092296 -15507487 + B3 SINE B2 49 120 -96 1 1684 309 68 0 0 chr3 144092297 144092341 -15507442 + (CA)n Simple_repeat Simple_repeat 1 44 0 1 1684 1051 200 77 0 chr3 144092408 144092603 -15507180 + B3 SINE B2 2 211 -5 1 1684 362 202 110 37 chr3 144092695 144092777 -15507006 - B1_Mus2 SINE Alu 0 147 60 1 1684 260 210 0 31 chr3 144093401 144093465 -15506318 + G-rich Low_complexity Low_complexity 2 63 0 1 1684 243 318 131 31 chr3 144095116 144095246 -15504537 + MER58A DNA MER1_type 16 158 -66 1 1684 800 234 71 32 chr3 144096061 144096313 -15503470 - MIRc SINE MIR -5 263 2 1 1684 181 218 53 35 chr3 144097139 144097196 -15502587 - L3 LINE CR1 -3360 1129 1072 1 1684 23 0 0 0 chr3 144098109 144098132 -15501651 + AT_rich Low_complexity Low_complexity 1 23 0 1 1684 536 236 27 0 chr3 144099210 144099320 -15500463 + PB1D10 SINE Alu 1 113 -4 1 1684 506 268 134 25 chr3 144099443 144099600 -15500183 - MER58A DNA MER1_type 0 224 51 1 1684 257 261 115 22 chr3 144099864 144099955 -15499828 + PB1D10 SINE Alu 1 103 -24 1 1684 348 296 104 71 chr3 144100733 144101002 -15498781 - B4 SINE B4 -13 279 2 1 1684 372 254 54 61 chr3 144101049 144101196 -15498587 + B3A SINE B2 1 146 -52 1 1684 344 262 10 2 chr3 144101800 144101899 -15497884 - PB1D10 SINE Alu 0 117 20 1 1684 634 241 94 70 chr3 144101915 144102248 -15497535 + MTE2a LTR MaLR 61 379 0 1 1684 240 367 79 33 chr3 144102972 144103124 -15496659 + MLT1J LTR MaLR 116 274 -238 1 1684 382 254 67 42 chr3 144103244 144103363 -15496420 + ID_B1 SINE B4 85 206 -18 1 1684 266 288 100 57 chr3 144103363 144103384 -15496399 + B1F1 SINE Alu 4 149 0 1 1684 508 168 22 175 chr3 144103424 144103561 -15496222 + B1_Mm SINE Alu 1 116 -31 1 1684 1615 211 56 75 chr3 144103663 144103854 -15495929 + MTD LTR MaLR 1 186 -233 1 1684 1186 84 53 18 chr3 144103854 144104024 -15495759 + B2_Mm2 SINE B2 2 177 -18 1 1684 1615 211 56 75 chr3 144104024 144104243 -15495540 + MTD LTR MaLR 187 403 -16 1 1684 1452 266 63 96 chr3 144104244 144105301 -15494482 + MYSERV-int LTR ERVK 4042 5310 -470 1 1684 304 290 185 10 chr3 144105301 144105496 -15494287 + RMER4A LTR ERVK 211 439 -27 1 1684 5090 170 54 32 chr3 144105496 144106105 -15493678 + MYSERV6-int LTR ERVK 7762 8375 -584 1 1684 3125 168 8 15 chr3 144106105 144106630 -15493153 - RLTR12B LTR ERVK -3 525 5 1 1684 5090 170 54 32 chr3 144106630 144107193 -15492590 + MYSERV6-int LTR ERVK 8376 8958 -1 1 1684 1010 249 39 50 chr3 144107193 144107531 -15492252 + RLTR15 LTR ERVK 1 334 -25 1 1684 262 296 153 27 chr3 144107783 144107894 -15491889 + MER20 DNA MER1_type 32 156 -63 1 1684 278 304 25 0 chr3 144107949 144108028 -15491755 - Charlie1a DNA MER1_type -739 716 636 1 1684 738 264 213 29 chr3 144108023 144108366 -15491417 + Charlie1a DNA MER1_type 697 1102 -353 1 1684 549 269 81 15 chr3 144108481 144108617 -15491166 + RSINE1 SINE B4 6 150 -15 1 1684 417 266 59 47 chr3 144108749 144108957 -15490826 - B3A SINE B2 0 216 8 1 1684 317 303 82 44 chr3 144109364 144109523 -15490260 - RSINE1 SINE B4 0 165 1 1 1684 465 103 0 0 chr3 144109927 144109995 -15489788 + (CGTG)n Simple_repeat Simple_repeat 4 71 0 1 1684 233 294 0 0 chr3 144111504 144111555 -15488228 + ID4 SINE ID 31 81 -2 1 1684 274 295 132 25 chr3 144111929 144112232 -15487551 - L2a LINE L2 -331 3095 2762 1 1684 398 234 4 12 chr3 144114634 144114763 -15485020 - B3 SINE B2 -4 212 21 1 1684 327 291 129 47 chr3 144114942 144115198 -15484585 - B4A SINE B4 -15 277 1 1 1684 434 290 93 0 chr3 144115211 144115318 -15484465 - PB1 SINE Alu -10 117 1 1 1684 24 77 0 0 chr3 144115493 144115545 -15484238 + AT_rich Low_complexity Low_complexity 1 52 0 1 1684 754 330 45 29 chr3 144117243 144117690 -15482093 + MT2A LTR ERVL 3 456 -77 2 1684 420 302 108 24 chr3 144117725 144117891 -15481892 - B3A SINE B2 -17 181 2 2 1684 663 218 164 0 chr3 144117979 144118199 -15481584 - MTD LTR MaLR 0 419 164 2 1684 332 94 0 19 chr3 144118234 144118288 -15481495 + (TTTTC)n Simple_repeat Simple_repeat 3 55 0 2 1684 754 39 0 0 chr3 144118288 144118390 -15481393 - B1_Mus2 SINE Alu 0 147 46 2 1684 387 214 26 88 chr3 144118353 144118466 -15481317 - MTD LTR MaLR -315 106 1 2 1684 328 270 111 33 chr3 144118881 144119061 -15480722 - B3A SINE B2 -4 194 1 2 1684 24 0 0 0 chr3 144119130 144119154 -15480629 + AT_rich Low_complexity Low_complexity 1 24 0 2 1684 958 211 10 20 chr3 144119801 144120004 -15479779 + B3 SINE B2 3 203 -13 2 1684 394 293 34 48 chr3 144120381 144120528 -15479255 - MER5A1 DNA MER1_type -4 162 18 2 1684 293 316 40 0 chr3 144121229 144121305 -15478478 + ID4_ SINE ID 2 80 -3 2 1684 2551 126 13 5 chr3 144121424 144121815 -15477968 - ORR1B1 LTR MaLR 0 394 1 2 1684 258 338 47 33 chr3 144123751 144123901 -15475882 - L2a LINE L2 -12 3414 3263 2 1684 1298 159 10 10 chr3 144124694 144124903 -15474880 - B3 SINE B2 -6 210 2 2 1684 428 196 21 11 chr3 144127627 144127720 -15472063 + B1_Mur2 SINE Alu 55 148 -1 2 1684 198 0 0 0 chr3 144127881 144127903 -15471880 + (GA)n Simple_repeat Simple_repeat 2 23 0 2 1684 766 242 201 14 chr3 144128784 144129077 -15470706 + ORR1E LTR MaLR 4 351 -8 2 1684 278 210 193 14 chr3 144129218 144129363 -15470420 + L1MDa LINE L1 1520 1690 -4943 2 1684 186 43 0 0 chr3 144129708 144129731 -15470052 + (CA)n Simple_repeat Simple_repeat 2 24 0 2 1684 220 260 0 0 chr3 144129731 144129781 -15470002 + RSINE1 SINE B4 91 140 -25 2 1684 1260 158 25 20 chr3 144129823 144130068 -15469715 + Lx3B LINE L1 6727 6972 -1 2 1684 782 315 119 3 chr3 144130602 144130971 -15468812 + L1MB5 LINE L1 5353 5764 -410 2 1684 495 291 87 19 chr3 144131047 144131254 -15468529 + L1MB5 LINE L1 5945 6165 -9 2 1684 210 284 29 29 chr3 144131370 144131439 -15468344 - PB1D10 SINE Alu -1 116 48 2 1684 228 268 29 58 chr3 144133378 144133481 -15466302 + PB1 SINE Alu 15 114 -13 2 1684 550 169 0 10 chr3 144133776 144133872 -15465911 - B1F SINE Alu -2 147 53 2 1684 180 135 0 0 chr3 144134262 144134299 -15465484 + (A)n Simple_repeat Simple_repeat 1 37 0 2 1684 21 0 0 0 chr3 144134926 144134947 -15464836 + AT_rich Low_complexity Low_complexity 1 21 0 2 1684 24 67 0 0 chr3 144135546 144135591 -15464192 + AT_rich Low_complexity Low_complexity 1 45 0 2 1684 637 271 59 0 chr3 144135603 144135773 -15464010 - B3A SINE B2 -18 180 1 2 1684 375 233 89 70 chr3 144135974 144136131 -15463652 + RSINE1 SINE B4 4 163 -2 2 1684 565 147 37 0 chr3 144136432 144136541 -15463242 - B2_Mm2 SINE B2 -5 190 78 2 1684 394 198 83 0 chr3 144136960 144137056 -15462727 - B3A SINE B2 -94 104 1 2 1684 513 172 0 0 chr3 144137245 144137332 -15462451 - Lx9 LINE L1 -957 6687 6601 2 1684 584 152 25 0 chr3 144137969 144138087 -15461696 + B1_Mus2 SINE Alu 27 147 0 2 1684 3169 124 22 26 chr3 144138315 144138820 -15460963 - L1_Mur2 LINE L1 -642 5235 4733 2 1684 3643 80 2 10 chr3 144139153 144139632 -15460151 + MT2C_Mm LTR ERVL 1 475 0 2 1684 911 246 34 0 chr3 144139734 144139941 -15459842 + B3 SINE B2 3 216 0 2 1684 3567 18 2 0 chr3 144139997 144140392 -15459391 + MTA_Mm LTR MaLR 1 396 0 2 1684 274 248 134 62 chr3 144140715 144140827 -15458956 - RSINE1 SINE B4 -38 127 8 2 1684 283 321 140 35 chr3 144141814 144141985 -15457798 - LTR41 LTR ERVL -577 191 3 2 1684 282 336 59 98 chr3 144142243 144142550 -15457233 + MTEa LTR MaLR 53 347 -32 2 1684 1552 47 0 45 chr3 144143037 144143236 -15456547 + B2_Mm2 SINE B2 1 190 -5 2 1684 409 336 26 76 chr3 144143349 144143613 -15456170 + L1MD LINE L1 3633 3883 -2263 2 1684 245 226 32 0 chr3 144145482 144145544 -15454239 + MTE2a LTR MaLR 22 85 -285 2 1684 1243 199 35 53 chr3 144145580 144146059 -15453724 - RMER4B LTR ERVK 0 466 17 2 1684 524 227 108 24 chr3 144146063 144146230 -15453553 + MTE2a LTR MaLR 197 377 -2 2 1684 1596 42 5 0 chr3 144147169 144147360 -15452423 - B2_Mm1t SINE B2 0 193 2 2 1684 699 113 9 0 chr3 144147471 144147577 -15452206 - B1_Mus1 SINE Alu -6 142 36 2 1684 1022 287 95 25 chr3 144148112 144148584 -15451199 + L1MB1 LINE L1 5558 6062 -127 2 1684 385 252 49 49 chr3 144148825 144148988 -15450795 + RSINE1 SINE B4 3 165 0 2 1684 2702 52 2 101 chr3 144150169 144150574 -15449209 + RLTR10B2 LTR ERVK 1 365 0 2 1684 297 247 9 85 chr3 144151586 144151692 -15448091 + B1F SINE Alu 7 104 -13 2 1684 261 175 63 0 chr3 144151762 144151825 -15447958 + MTC LTR MaLR 3 69 -352 2 1684 514 138 20 145 chr3 144151823 144151975 -15447808 + MTD LTR MaLR 277 409 -10 2 1684 252 0 0 0 chr3 144155530 144155558 -15444225 + (CA)n Simple_repeat Simple_repeat 2 29 0 2 1684 813 245 20 19 chr3 144156289 144156499 -15443284 + B3 SINE B2 1 186 -9 2 1684 1075 63 14 7 chr3 144156951 144157094 -15442689 - B1_Mus2 SINE Alu -3 144 1 2 1684 180 0 0 0 chr3 144157380 144157400 -15442383 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 2 1684 225 0 0 0 chr3 144157479 144157504 -15442279 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 2 1684 331 200 53 115 chr3 144158366 144158479 -15441304 + L1M2 LINE L1 5696 5801 -499 2 1684 1442 196 226 12 chr3 144158799 144159144 -15440639 + MTD LTR MaLR 1 419 0 2 1684 532 258 58 11 chr3 144160263 144160451 -15439332 + B3A SINE B2 2 198 0 2 1684 394 241 112 41 chr3 144161155 144161324 -15438459 + B3A SINE B2 2 182 -16 2 1684 430 259 7 73 chr3 144162632 144162782 -15437001 - RSINE1 SINE B4 -2 163 24 2 1684 461 277 88 0 chr3 144162961 144163098 -15436685 + B1F SINE Alu 1 149 0 2 1684 1195 68 0 0 chr3 144163402 144163549 -15436234 - B1_Mus1 SINE Alu 0 148 2 2 1684 302 266 100 9 chr3 144164168 144164278 -15435505 - MER5A1 DNA MER1_type 0 166 47 2 1684 342 146 12 24 chr3 144164505 144164589 -15435194 + GA-rich Low_complexity Low_complexity 3 85 0 2 1684 410 258 21 11 chr3 144164656 144164750 -15435033 - RSINE1 SINE B4 -69 96 2 2 1684 417 20 0 0 chr3 144165523 144165573 -15434210 + (TG)n Simple_repeat Simple_repeat 1 50 0 2 1684 639 248 25 13 chr3 144165642 144165801 -15433982 - B3 SINE B2 -54 162 2 2 1684 3096 47 37 0 chr3 144166526 144166908 -15432875 + MTA_Mm LTR MaLR 1 396 0 2 1684 1744 281 112 45 chr3 144167024 144167831 -15431952 + Lx9 LINE L1 6601 7461 -183 2 1684 1081 240 54 73 chr3 144170323 144170764 -15429019 + RMER4A LTR ERVK 32 464 -2 2 1684 457 233 188 37 chr3 144170947 144171039 -15428744 + ORR1C2 LTR MaLR 57 165 -209 2 1684 231 36 0 0 chr3 144171039 144171067 -15428716 + (TG)n Simple_repeat Simple_repeat 2 29 0 2 1684 502 207 86 17 chr3 144171067 144171246 -15428537 + ORR1C2 LTR MaLR 166 379 -5 2 1684 890 240 30 0 chr3 144171942 144172142 -15427641 + B3 SINE B2 3 208 -8 2 1684 903 227 110 144 chr3 144172496 144172913 -15426870 - MTD LTR MaLR -14 405 3 2 1684 335 300 36 0 chr3 144172928 144173038 -15426745 + PB1D9 SINE Alu 6 119 -1 2 1684 614 256 109 16 chr3 144174739 144174922 -15424861 + B3 SINE B2 2 201 -15 2 1684 1440 60 16 6 chr3 144175084 144175267 -15424516 - B2_Mm2 SINE B2 -10 185 1 2 1684 24 67 0 0 chr3 144175321 144175366 -15424417 + AT_rich Low_complexity Low_complexity 1 45 0 2 1684 2640 56 0 0 chr3 144175395 144175717 -15424066 - L1Md_T LINE L1 0 6582 6261 2 1684 261 0 0 0 chr3 144175726 144175755 -15424028 + (CA)n Simple_repeat Simple_repeat 2 30 0 2 1684 423 0 0 0 chr3 144175755 144175801 -15423982 + (GA)n Simple_repeat Simple_repeat 2 48 0 2 1684 261 0 0 0 chr3 144178637 144178666 -15421117 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 2 1684 225 314 45 23 chr3 144178743 144178831 -15420952 - MLT1E2 LTR MaLR -520 107 18 2 1685 1279 81 29 6 chr3 144179304 144179477 -15420306 + B2_Mm2 SINE B2 1 177 -18 2 1685 360 64 0 0 chr3 144179478 144179525 -15420258 + (TAAA)n Simple_repeat Simple_repeat 3 49 0 2 1685 201 158 0 0 chr3 144180435 144180473 -15419310 + T-rich Low_complexity Low_complexity 5 42 0 2 1685 1184 55 0 0 chr3 144180473 144180619 -15419164 - B1_Mus2 SINE Alu 0 147 2 2 1685 510 198 28 0 chr3 144180750 144180856 -15418927 + PB1D7 SINE Alu 3 111 -9 2 1685 22 0 0 0 chr3 144180860 144180882 -15418901 + GC_rich Low_complexity Low_complexity 1 22 0 2 1685 234 224 0 0 chr3 144180892 144180941 -15418842 + L1M3 LINE L1 5825 5873 -307 2 1685 1100 258 46 112 chr3 144181138 144181834 -15417949 + L1MA4A LINE L1 5312 5928 -1122 2 1685 21 57 0 0 chr3 144182344 144182379 -15417404 + AT_rich Low_complexity Low_complexity 1 35 0 2 1685 490 264 100 36 chr3 144183024 144183408 -15416375 - L1MA5 LINE L1 -278 6025 5609 2 1685 627 240 88 22 chr3 144184321 144184527 -15415256 + B3A SINE B2 7 216 0 2 1685 276 289 40 23 chr3 144184558 144184676 -15415107 + B1F SINE Alu 3 120 0 2 1685 279 0 0 0 chr3 144184781 144184812 -15414971 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 2 1685 727 273 34 10 chr3 144185087 144185294 -15414489 + B3 SINE B2 1 212 -4 2 1685 285 197 0 0 chr3 144185504 144185565 -15414218 + (TTA)n Simple_repeat Simple_repeat 2 62 0 2 1685 409 244 126 47 chr3 144186259 144186474 -15413309 - B4A SINE B4 -56 236 5 3 1685 246 314 92 5 chr3 144186965 144187160 -15412623 - L1MA4A LINE L1 -329 5974 5763 3 1685 250 265 12 0 chr3 144187335 144187418 -15412365 - L1MD LINE L1 -776 5370 5287 3 1685 267 286 97 9 chr3 144187632 144187745 -15412038 - L1M2 LINE L1 -2465 3678 3556 3 1685 3354 38 5 0 chr3 144188096 144188490 -15411293 - MTA_Mm LTR MaLR 0 396 1 3 1685 3059 125 26 19 chr3 144191039 144191119 -15408664 - RLTR20A LTR ERVK -6 535 452 3 1685 219 36 0 0 chr3 144191119 144191147 -15408636 + (CA)n Simple_repeat Simple_repeat 2 29 0 3 1685 372 22 0 0 chr3 144191147 144191191 -15408592 + (TC)n Simple_repeat Simple_repeat 1 45 0 3 1685 3059 125 26 19 chr3 144191191 144191640 -15408143 - RLTR20A LTR ERVK -90 451 4 3 1685 195 69 0 0 chr3 144193699 144193728 -15406055 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 3 1685 207 0 0 0 chr3 144194646 144194669 -15405114 + (CATA)n Simple_repeat Simple_repeat 4 26 0 3 1685 215 220 0 0 chr3 144194994 144195044 -15404739 + (TG)n Simple_repeat Simple_repeat 2 51 0 3 1685 288 0 0 0 chr3 144195221 144195253 -15404530 + (GAAA)n Simple_repeat Simple_repeat 2 33 0 3 1685 429 20 0 0 chr3 144195253 144195302 -15404481 + (GGGA)n Simple_repeat Simple_repeat 2 51 0 3 1685 1103 286 59 32 chr3 144196440 144196844 -15402939 - Lx6 LINE L1 -92 7368 6954 3 1685 251 345 89 15 chr3 144196877 144197080 -15402703 + L4 LINE RTE 960 1177 -852 3 1685 281 317 28 65 chr3 144197087 144197195 -15402588 + PB1D7 SINE Alu 2 105 -15 3 1685 188 298 132 19 chr3 144197432 144197538 -15402245 + L4 LINE RTE 1217 1334 -695 3 1685 1503 104 124 4 chr3 144197807 144198049 -15401734 - Lx LINE L1 0 6654 6384 3 1685 260 172 31 15 chr3 144198298 144198363 -15401420 + L1ME3 LINE L1 6096 6161 -1 3 1685 211 143 24 0 chr3 144198480 144198522 -15401261 + (CAAAC)n Simple_repeat Simple_repeat 2 44 0 3 1685 324 195 115 4 chr3 144198660 144198752 -15401031 - B1_Mur3 SINE Alu -7 113 15 3 1685 742 240 56 8 chr3 144198764 144198981 -15400802 - RCHARR1 DNA MER1_type -23 951 725 3 1685 3901 47 19 0 chr3 144198981 144199447 -15400336 + MT2C_Mm LTR ERVL 1 475 0 3 1685 742 240 56 8 chr3 144199447 144199481 -15400302 - RCHARR1 DNA MER1_type -250 724 688 3 1685 493 229 165 24 chr3 144199520 144199690 -15400093 - B2_Mm2 SINE B2 0 195 2 3 1685 2036 253 55 30 chr3 144199690 144200364 -15399419 - RCHARR1 DNA MER1_type -283 691 1 3 1685 656 265 59 16 chr3 144200749 144201002 -15398781 + Tigger7 DNA MER2_type 340 603 -1888 3 1685 372 289 82 0 chr3 144202300 144202397 -15397386 + B1F2 SINE Alu 1 105 -44 3 1685 766 248 89 25 chr3 144202484 144202687 -15397096 + B3 SINE B2 1 216 0 3 1685 304 278 28 0 chr3 144202955 144203063 -15396720 + B1F SINE Alu 34 144 -5 3 1685 1297 47 58 6 chr3 144203561 144203732 -15396051 + B2_Mm2 SINE B2 2 181 -14 3 1685 294 29 0 0 chr3 144205613 144205648 -15394135 + (TC)n Simple_repeat Simple_repeat 2 36 0 3 1685 414 0 0 0 chr3 144205648 144205693 -15394090 + (TG)n Simple_repeat Simple_repeat 1 46 0 3 1685 262 253 20 11 chr3 144205695 144205779 -15394004 + PB1D10 SINE Alu 37 119 -30 3 1685 1211 89 17 0 chr3 144206057 144206236 -15393547 - B2_Mm2 SINE B2 -1 194 13 3 1685 1023 53 38 0 chr3 144206744 144206875 -15392908 - B1_Mus1 SINE Alu -11 137 2 3 1685 252 86 0 0 chr3 144208187 144208222 -15391561 + (CA)n Simple_repeat Simple_repeat 1 35 0 3 1685 277 263 0 59 chr3 144208246 144208347 -15391436 - RSINE1 SINE B4 -66 99 5 3 1685 316 271 92 69 chr3 144211674 144211805 -15387978 + B4 SINE B4 115 248 -44 3 1685 235 283 112 92 chr3 144212954 144213160 -15386623 + ORR1E LTR MaLR 96 305 -54 3 1685 230 180 80 0 chr3 144213283 144213333 -15386450 + B1_Mur1 SINE Alu 93 146 -3 3 1685 1176 122 101 24 chr3 144213895 144214104 -15385679 + URR1A DNA MER1_type 1 225 -1 3 1685 418 197 320 7 chr3 144214741 144214894 -15384889 + B3 SINE B2 1 201 -15 3 1685 192 152 0 0 chr3 144215647 144215680 -15384103 + (CA)n Simple_repeat Simple_repeat 1 33 0 3 1685 570 276 33 0 chr3 144215697 144215849 -15383934 - Lx8 LINE L1 -163 7310 7154 3 1685 1498 47 0 45 chr3 144218521 144218723 -15381060 - B2_Mm2 SINE B2 0 195 3 3 1685 242 245 149 71 chr3 144219540 144219694 -15380089 + L1MEc LINE L1 102 267 -6133 3 1685 225 65 0 0 chr3 144220421 144220452 -15379331 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 3 1685 264 332 129 35 chr3 144220458 144221079 -15378704 + L1MEc LINE L1 709 1387 -5013 3 1685 259 286 308 14 chr3 144221554 144221915 -15377868 + L1MEc LINE L1 1410 1876 -4524 3 1685 538 231 82 0 chr3 144222128 144222310 -15377473 + L1MEc LINE L1 2232 2428 -3972 3 1685 496 276 43 22 chr3 144222325 144222507 -15377276 + B4A SINE B4 24 209 -83 3 1685 1379 155 25 66 chr3 144222507 144222934 -15376849 + MT2A LTR ERVL 1 490 -43 3 1685 204 216 0 0 chr3 144222938 144222975 -15376808 + (TATG)n Simple_repeat Simple_repeat 3 39 0 3 1685 276 134 0 0 chr3 144222975 144223042 -15376741 + MT2A LTR ERVL 467 533 0 3 1685 339 288 74 29 chr3 144223082 144223257 -15376526 + B4A SINE B4 39 221 -71 3 1685 189 0 0 0 chr3 144223311 144223332 -15376451 + (CA)n Simple_repeat Simple_repeat 2 22 0 3 1685 434 241 37 22 chr3 144223573 144223709 -15376074 - MLT1A1 LTR MaLR 0 408 271 3 1685 297 374 26 0 chr3 144224112 144224227 -15375556 - PB1 SINE Alu -7 120 3 3 1685 275 246 132 44 chr3 144224281 144224417 -15375366 - L1MA8 LINE L1 -72 6219 6072 3 1685 425 248 313 4 chr3 144224528 144224771 -15375012 + MTE2b LTR MaLR 58 375 -4 3 1685 1509 282 85 57 chr3 144224820 144225256 -15374527 - L1MA8 LINE L1 -291 6000 5579 3 1685 1177 43 0 0 chr3 144225256 144225396 -15374387 - B1_Mus2 SINE Alu -7 140 1 3 1685 1509 269 117 28 chr3 144225396 144225730 -15374053 - L1MA8 LINE L1 -713 5578 5202 3 1685 623 219 90 71 chr3 144225754 144225965 -15373818 + ID_B1 SINE B4 3 217 -7 3 1685 275 362 101 68 chr3 144225990 144226154 -15373629 - L2 LINE L2 -630 2789 2615 3 1685 1680 26 5 0 chr3 144226154 144226345 -15373438 - B2_Mm1a SINE B2 0 193 2 3 1685 275 362 101 68 chr3 144226345 144226634 -15373149 - L2 LINE L2 -805 2614 2321 3 1685 1173 75 0 0 chr3 144227878 144228024 -15371759 - B1_Mus2 SINE Alu 0 147 2 3 1685 318 50 0 0 chr3 144228712 144228752 -15371031 + (CA)n Simple_repeat Simple_repeat 1 40 0 3 1685 24 0 0 0 chr3 144229604 144229628 -15370155 + AT_rich Low_complexity Low_complexity 1 24 0 3 1685 216 0 0 0 chr3 144229891 144229915 -15369868 + (A)n Simple_repeat Simple_repeat 1 24 0 3 1685 204 336 139 28 chr3 144230281 144230425 -15369358 + MIRb SINE MIR 38 197 -71 3 1685 324 234 0 60 chr3 144230579 144230679 -15369104 + PB1 SINE Alu 32 125 -2 3 1685 393 269 8 25 chr3 144230789 144230907 -15368876 - PB1D10 SINE Alu 0 117 2 3 1685 495 180 11 0 chr3 144235731 144235820 -15363963 - RSINE1 SINE B4 -73 92 3 3 1685 196 244 0 0 chr3 144235820 144235865 -15363918 + L2b LINE L2 3104 3148 -227 3 1685 458 259 81 131 chr3 144236669 144236827 -15362956 + B1F SINE Alu 1 143 -6 3 1685 374 255 332 57 chr3 144238117 144238346 -15361437 - B4A SINE B4 0 292 1 3 1685 1166 48 7 20 chr3 144238367 144238516 -15361267 - B1_Mus1 SINE Alu 0 148 2 3 1685 201 254 42 14 chr3 144238609 144238681 -15361102 + MIRb SINE MIR 189 262 -6 3 1685 603 242 48 43 chr3 144238765 144238951 -15360832 - B4A SINE B4 -105 187 1 3 1685 496 316 174 17 chr3 144239010 144239303 -15360480 - MLT1G3 LTR MaLR -8 587 249 3 1685 276 100 0 0 chr3 144239347 144239387 -15360396 + (CA)n Simple_repeat Simple_repeat 2 41 0 3 1685 326 312 88 0 chr3 144239808 144239933 -15359850 + MER58B DNA MER1_type 205 340 -1 3 1685 205 286 79 0 chr3 144239990 144240053 -15359730 - MIR SINE MIR -160 102 35 3 1685 386 227 92 0 chr3 144240321 144240440 -15359343 + ID_B1 SINE B4 93 222 -2 3 1685 292 256 138 49 chr3 144241264 144241387 -15358396 - ID_B1 SINE B4 -12 212 79 3 1685 239 301 27 0 chr3 144241482 144241555 -15358228 + ID4 SINE ID 1 75 -8 3 1685 427 245 160 6 chr3 144242812 144242968 -15356815 - B3 SINE B2 -36 180 1 3 1685 226 312 42 20 chr3 144243090 144243200 -15356583 + B1F1 SINE Alu 1 113 -7 3 1685 299 282 58 0 chr3 144243624 144243715 -15356068 + B1F1 SINE Alu 12 104 -13 3 1685 231 308 102 37 chr3 144243992 144244100 -15355683 - PB1D10 SINE Alu -1 116 2 3 1685 24 67 0 0 chr3 144244150 144244195 -15355588 + AT_rich Low_complexity Low_complexity 1 45 0 3 1685 219 114 0 0 chr3 144244229 144244264 -15355519 + (TTA)n Simple_repeat Simple_repeat 2 36 0 3 1685 2035 178 42 113 chr3 144245141 144245691 -15354092 - RLTR18B LTR ERVK -1 511 1 3 1685 329 317 24 32 chr3 144245913 144246037 -15353746 - B3A SINE B2 0 198 76 3 1685 258 32 0 0 chr3 144246088 144246119 -15353664 + (TCTG)n Simple_repeat Simple_repeat 2 32 0 3 1685 712 173 42 21 chr3 144246164 144246306 -15353477 - B1_Mur4 SINE Alu 0 150 6 3 1685 203 329 13 0 chr3 144246811 144246887 -15352896 + T-rich Low_complexity Low_complexity 4 80 0 3 1685 195 49 73 0 chr3 144247446 144247487 -15352296 + (TCCC)n Simple_repeat Simple_repeat 1 44 0 3 1685 387 301 100 20 chr3 144248657 144248857 -15350926 - MTEb LTR MaLR -159 220 5 3 1685 189 0 0 0 chr3 144249431 144249452 -15350331 + (A)n Simple_repeat Simple_repeat 1 21 0 3 1685 342 285 170 37 chr3 144250213 144250483 -15349300 - L1MB3 LINE L1 -321 5862 5557 3 1685 2956 30 185 0 chr3 144250792 144251160 -15348623 - RLTR10C LTR ERVK 0 436 1 3 1685 842 220 28 0 chr3 144251470 144251647 -15348136 + B3 SINE B2 1 182 -34 3 1685 1820 181 65 3 chr3 144251660 144252032 -15347751 - MTD LTR MaLR -13 406 12 3 1685 419 288 81 35 chr3 144252330 144252503 -15347280 + B3A SINE B2 1 181 -17 3 1685 1120 177 117 60 chr3 144252614 144252897 -15346886 + RMER1A Other Other 728 1026 -4 3 1685 590 265 132 0 chr3 144253106 144253295 -15346488 - MER44B DNA MER2_type -300 250 37 3 1685 570 271 0 7 chr3 144254221 144254366 -15345417 + B1_Mur2 SINE Alu 4 147 -2 4 1685 450 182 60 53 chr3 144255410 144255543 -15344240 + RMER1B Other Other 929 1062 -4 4 1685 1228 86 69 0 chr3 144255605 144255780 -15344003 + B2_Mm2 SINE B2 2 188 -7 4 1685 225 208 131 56 chr3 144258506 144258613 -15341170 - L1MC LINE L1 -2215 3931 3817 4 1685 661 235 21 36 chr3 144258973 144259167 -15340616 + B3A SINE B2 1 191 -7 4 1685 904 91 53 0 chr3 144259172 144259304 -15340479 + B1_Mus1 SINE Alu 2 140 -8 4 1685 260 319 0 0 chr3 144262536 144262605 -15337178 - ID4 SINE ID -14 69 1 4 1685 572 164 27 0 chr3 144262730 144262840 -15336943 - B1_Mus1 SINE Alu -8 140 28 4 1685 435 92 0 0 chr3 144263275 144263340 -15336443 + (TG)n Simple_repeat Simple_repeat 1 65 0 4 1685 224 215 0 60 chr3 144263506 144263590 -15336193 + T-rich Low_complexity Low_complexity 3 81 0 4 1685 249 253 108 0 chr3 144263591 144263674 -15336109 - B4A SINE B4 -199 93 2 4 1685 320 301 58 0 chr3 144264167 144264270 -15335513 - PB1 SINE Alu -13 114 6 4 1685 240 220 0 0 chr3 144264298 144264348 -15335435 - 4.5SRNA scRNA scRNA 0 94 45 4 1685 328 184 118 28 chr3 144264304 144264396 -15335387 - PB1D10 SINE Alu -56 94 2 4 1685 2134 155 45 3 chr3 144264647 144264682 -15335101 - ORR1B1 LTR MaLR -2 392 359 4 1685 2982 87 12 71 chr3 144264682 144265163 -15334620 + RLTR11B LTR ERVK 1 453 0 4 1685 2134 155 45 3 chr3 144265163 144265503 -15334280 - ORR1B1 LTR MaLR -36 358 2 4 1685 691 185 47 28 chr3 144266203 144266393 -15333390 - B3A SINE B2 -10 185 4 4 1685 423 323 15 22 chr3 144266404 144266540 -15333243 - B3A SINE B2 0 198 64 4 1685 808 281 140 52 chr3 144267030 144267436 -15332347 + MLT2C2 LTR ERVL 17 458 -6 4 1685 183 80 0 0 chr3 144267878 144267903 -15331880 + (TTTTC)n Simple_repeat Simple_repeat 2 26 0 4 1685 499 202 48 0 chr3 144268291 144268395 -15331388 - PB1D9 SINE Alu -9 111 3 4 1685 915 131 27 14 chr3 144268722 144268869 -15330914 - B1_Mur3 SINE Alu 0 149 1 4 1685 1071 95 142 0 chr3 144268902 144269071 -15330712 + B2_Mm2 SINE B2 3 195 0 4 1685 1231 41 7 0 chr3 144269085 144269231 -15330552 - B1_Mm SINE Alu 0 147 1 4 1685 32 26 0 0 chr3 144269344 144269383 -15330400 + AT_rich Low_complexity Low_complexity 1 39 0 4 1685 817 221 88 10 chr3 144269530 144269722 -15330061 - B3 SINE B2 -9 207 1 4 1685 271 324 77 45 chr3 144270123 144270278 -15329505 - MER102b DNA MER1_type -94 247 88 4 1685 911 128 0 0 chr3 144270371 144270504 -15329279 - B1_Mur2 SINE Alu -13 136 4 4 1685 734 198 61 46 chr3 144270649 144270845 -15328938 + B3 SINE B2 1 199 -17 4 1685 222 208 0 0 chr3 144271258 144271311 -15328472 + CT-rich Low_complexity Low_complexity 3 55 0 4 1685 310 264 0 71 chr3 144271577 144271675 -15328108 + ID_B1 SINE B4 105 195 -29 4 1685 243 0 0 0 chr3 144271686 144271713 -15328070 + (TG)n Simple_repeat Simple_repeat 1 27 0 4 1685 486 0 0 0 chr3 144271713 144271766 -15328017 + (GA)n Simple_repeat Simple_repeat 1 54 0 4 1685 352 313 73 20 chr3 144271880 144272030 -15327753 + ORR1E LTR MaLR 38 195 -164 4 1685 813 136 0 0 chr3 144272035 144272212 -15327571 + (TC)n Simple_repeat Simple_repeat 2 178 0 4 1685 717 208 77 12 chr3 144272225 144272395 -15327388 + ORR1E LTR MaLR 179 359 0 4 1685 490 246 56 39 chr3 144272435 144272613 -15327170 - MLT1B LTR MaLR -2 388 208 4 1685 446 289 65 32 chr3 144272727 144272881 -15326902 + RLTR42-int LTR ERVK 1230 1388 -4134 4 1685 511 250 121 11 chr3 144273198 144273388 -15326395 - MLT1B LTR MaLR -179 211 1 4 1685 347 173 12 0 chr3 144273570 144273651 -15326132 + GA-rich Low_complexity Low_complexity 2 83 0 4 1685 930 207 199 26 chr3 144273788 144274057 -15325726 + ORR1C2 LTR MaLR 1 321 -63 4 1685 789 128 296 23 chr3 144274057 144274233 -15325550 - URR1A DNA MER1_type 0 226 3 4 1685 930 207 199 26 chr3 144274233 144274275 -15325508 + ORR1C2 LTR MaLR 322 366 -18 4 1685 1981 137 19 65 chr3 144275040 144275470 -15324313 + RMER17C LTR ERVK 1 410 0 4 1685 389 284 0 10 chr3 144276132 144276235 -15323548 - PB1D10 SINE Alu 0 117 16 4 1685 1521 63 16 0 chr3 144276241 144276431 -15323352 - B2_Mm2 SINE B2 -1 194 2 4 1685 389 240 173 0 chr3 144276609 144276713 -15323070 + RSINE1 SINE B4 4 125 -40 4 1685 220 353 78 7 chr3 144277084 144277238 -15322545 + L2a LINE L2 3260 3424 -2 4 1685 239 273 99 20 chr3 144278164 144278265 -15321518 - MLT1K LTR MaLR -8 587 479 4 1685 548 243 126 11 chr3 144278325 144278500 -15321283 - B3A SINE B2 -3 195 1 4 1685 234 280 40 0 chr3 144278512 144278587 -15321196 + MER58B DNA MER1_type 170 247 -94 4 1685 504 330 147 14 chr3 144278657 144279010 -15320773 - MLT1K LTR MaLR -126 469 70 4 1685 201 284 72 18 chr3 144279171 144279282 -15320501 - MIRb SINE MIR -17 251 135 4 1685 321 192 54 14 chr3 144280576 144280650 -15319133 - L1MC4 LINE L1 -2 8040 7964 4 1685 838 186 87 0 chr3 144280987 144281159 -15318624 - B3 SINE B2 -29 187 1 4 1685 412 272 48 92 chr3 144281159 144281374 -15318409 - MTD LTR MaLR -207 212 8 4 1685 1185 68 0 0 chr3 144281536 144281682 -15318101 + B1_Mus2 SINE Alu 2 147 0 4 1685 2224 97 3 6 chr3 144281946 144282279 -15317504 + IAPLTR1a_Mm LTR ERVK 1 332 -5 4 1685 3632 61 5 35 chr3 144282279 144283036 -15316747 + IAPEz-int LTR ERVK 6 662 -5819 4 1685 953 84 0 0 chr3 144283036 144283155 -15316628 + IAPEz-int LTR ERVK 1359 1477 -5004 4 1685 1900 90 4 0 chr3 144283156 144283401 -15316382 + IAPEz-int LTR ERVK 2252 2497 -5183 4 1685 15101 42 5 3 chr3 144283428 144285197 -15314586 + IAPEz-int LTR ERVK 4708 6479 -2 4 1685 2175 115 3 6 chr3 144285199 144285532 -15314251 + IAPLTR1a_Mm LTR ERVK 1 332 -5 4 1685 490 306 49 24 chr3 144285629 144285793 -15313990 - MLT1A0 LTR MaLR -83 282 115 4 1685 574 274 82 31 chr3 144285809 144286005 -15313778 - B3 SINE B2 0 216 11 4 1685 227 200 246 0 chr3 144286007 144286072 -15313711 - MLT1A0 LTR MaLR -284 81 1 4 1685 408 290 0 9 chr3 144287203 144287311 -15312472 + PB1D10 SINE Alu 1 107 -10 4 1685 279 0 0 0 chr3 144287331 144287362 -15312421 + (TGGA)n Simple_repeat Simple_repeat 4 34 0 4 1685 951 46 122 0 chr3 144287466 144287597 -15312186 - B1_Mm SINE Alu 0 147 1 4 1685 386 246 49 7 chr3 144287602 144287745 -15312038 - MER5C DNA MER1_type -36 277 129 4 1685 2483 127 152 20 chr3 144287776 144288284 -15311499 + RMER15 LTR ERVL 1 575 0 4 1685 306 0 0 0 chr3 144289425 144289459 -15310324 + (TGAA)n Simple_repeat Simple_repeat 3 36 0 4 1685 2171 161 56 5 chr3 144289716 144290109 -15309674 + MTC LTR MaLR 9 421 0 4 1685 1244 192 20 17 chr3 144290305 144290602 -15309181 + RMER10A LTR ERVL 1 298 -144 4 1685 192 200 40 0 chr3 144290606 144290681 -15309102 + CT-rich Low_complexity Low_complexity 1 78 0 4 1685 805 174 5 32 chr3 144290681 144290871 -15308912 + RMER10A LTR ERVL 258 442 0 4 1685 412 261 105 64 chr3 144291148 144291613 -15308170 + LTR73 LTR ERV1 6 535 -37 4 1685 266 333 117 90 chr3 144291889 144292189 -15307594 + ORR1E LTR MaLR 1 308 -51 4 1685 336 102 0 0 chr3 144292422 144292471 -15307312 + (CACCAT)n Simple_repeat Simple_repeat 4 52 0 4 1685 511 308 52 6 chr3 144292631 144292804 -15306979 + B3A SINE B2 2 182 -16 4 1685 405 0 0 0 chr3 144292808 144292853 -15306930 + (CA)n Simple_repeat Simple_repeat 1 45 0 4 1685 490 216 0 20 chr3 144292895 144292994 -15306789 + PB1D10 SINE Alu 2 98 -19 4 1685 345 24 0 0 chr3 144293016 144293058 -15306725 + (CA)n Simple_repeat Simple_repeat 2 43 0 4 1685 419 324 7 33 chr3 144293191 144293344 -15306439 - ID_B1 SINE B4 -13 211 63 4 1685 25 31 0 0 chr3 144293818 144293850 -15305933 + AT_rich Low_complexity Low_complexity 1 32 0 4 1685 4056 102 19 36 chr3 144294555 144295194 -15304589 - RLTR5_Mm LTR ERV1 0 628 1 4 1685 1260 247 47 73 chr3 144295374 144295758 -15304025 - MTD LTR MaLR -34 385 12 4 1685 1194 95 0 0 chr3 144295987 144296166 -15303617 + (GGA)n Simple_repeat Simple_repeat 2 180 0 4 1685 333 155 0 0 chr3 144296168 144296226 -15303557 + GA-rich Low_complexity Low_complexity 3 60 0 4 1685 897 153 7 7 chr3 144296593 144296728 -15303055 + B1_Mur3 SINE Alu 1 136 -13 4 1685 189 0 0 0 chr3 144296728 144296749 -15303034 + (CAAA)n Simple_repeat Simple_repeat 1 21 0 4 1685 235 255 80 34 chr3 144297017 144297179 -15302604 + MIRb SINE MIR 7 175 -93 4 1685 402 79 16 0 chr3 144297240 144297303 -15302480 - RLTR40 LTR ERVK -594 223 160 4 1685 3896 31 0 11 chr3 144297303 144297762 -15302021 - L1Md_F3 LINE L1 -1 6583 6130 4 1685 274 232 5 0 chr3 144298096 144298154 -15301629 + PB1D10 SINE Alu 23 83 -37 4 1685 345 349 141 8 chr3 144299122 144299385 -15300398 - ORR1E LTR MaLR -59 300 3 4 1685 960 248 139 9 chr3 144299626 144299959 -15299824 + MTD LTR MaLR 45 398 -21 4 1685 857 247 65 38 chr3 144300428 144300689 -15299094 + B4A SINE B4 2 269 -23 4 1685 414 0 0 0 chr3 144301417 144301463 -15298320 + (TG)n Simple_repeat Simple_repeat 2 47 0 4 1685 201 74 0 0 chr3 144301531 144301558 -15298225 + (TCCC)n Simple_repeat Simple_repeat 1 27 0 4 1685 581 231 176 30 chr3 144301558 144301780 -15298003 - B4 SINE B4 -44 248 1 4 1685 818 91 0 27 chr3 144302264 144302411 -15297372 + (GGA)n Simple_repeat Simple_repeat 2 144 0 4 1685 441 54 0 0 chr3 144302670 144302726 -15297057 + (TG)n Simple_repeat Simple_repeat 2 57 0 4 1685 401 290 52 62 chr3 144303703 144303993 -15295790 + RMER10A LTR ERVL 12 298 -144 4 1685 205 270 22 22 chr3 144303993 144304084 -15295699 + CT-rich Low_complexity Low_complexity 3 93 0 4 1685 387 0 0 0 chr3 144304380 144304423 -15295360 + (TG)n Simple_repeat Simple_repeat 1 43 0 4 1685 270 219 80 27 chr3 144304455 144304530 -15295253 + RMER10A LTR ERVL 346 424 -18 4 1685 338 306 58 0 chr3 144304624 144304745 -15295038 + LTR16C LTR ERVL 358 485 -4 4 1685 259 307 50 0 chr3 144304814 144304915 -15294868 - LTR37B LTR ERV1 0 468 363 4 1685 1056 282 37 24 chr3 144305063 144305437 -15294346 - MTEa LTR MaLR 0 379 1 4 1685 613 268 23 138 chr3 144307366 144307713 -15292070 - RMER5 LTR ERV1 -11 523 217 4 1685 603 192 70 88 chr3 144307752 144307923 -15291860 - B3 SINE B2 0 216 49 5 1685 361 275 0 71 chr3 144308147 144308245 -15291538 - RSINE1 SINE B4 -2 163 73 5 1685 2952 146 20 33 chr3 144308245 144308792 -15290991 + RLTR25A LTR ERVK 1 540 -563 5 1685 3083 31 6 0 chr3 144309203 144309558 -15290225 - IAPEY2_LTR LTR ERVK 0 357 1 5 210 3080 83 2 12 chr3 144309869 144310273 -15289510 - MTB LTR MaLR 0 400 1 5 1686 454 332 39 81 chr3 144310393 144310678 -15289105 - B4 SINE B4 -19 273 1 5 1686 22 35 0 0 chr3 144310723 144310752 -15289031 + AT_rich Low_complexity Low_complexity 1 29 0 5 1686 21 57 0 0 chr3 144311110 144311145 -15288638 + AT_rich Low_complexity Low_complexity 1 35 0 5 1686 718 245 6 18 chr3 144311145 144311311 -15288472 - RSINE1 SINE B4 0 165 2 5 1686 236 104 29 29 chr3 144311332 144311401 -15288382 + A-rich Low_complexity Low_complexity 2 70 0 5 1686 552 274 73 6 chr3 144311720 144311885 -15287898 + B3A SINE B2 1 176 -22 5 1686 297 0 0 0 chr3 144311909 144311942 -15287841 + (CA)n Simple_repeat Simple_repeat 1 33 0 5 1686 1453 53 26 16 chr3 144312665 144312856 -15286927 - B2_Mm2 SINE B2 -1 194 2 5 1686 451 206 75 0 chr3 144313242 144313349 -15286434 - Lx9 LINE L1 -611 7033 6919 5 1686 1363 89 0 6 chr3 144313359 144313540 -15286243 + B2_Mm2 SINE B2 2 181 -14 5 1686 477 122 0 0 chr3 144313636 144313710 -15286073 + (TC)n Simple_repeat Simple_repeat 2 75 0 5 1686 278 304 78 11 chr3 144313884 144314105 -15285678 - L1M3d LINE L1 -4538 2171 1995 5 1686 897 82 37 0 chr3 144314107 144314241 -15285542 - B1_Mus2 SINE Alu 0 147 9 5 1686 535 244 24 30 chr3 144314241 144314270 -15285513 - ID_B1 SINE B4 0 222 61 5 1686 1704 115 15 7 chr3 144314391 144314662 -15285121 + MTC LTR MaLR 149 421 0 5 1686 1753 287 130 29 chr3 144314709 144315225 -15284558 + Lx8 LINE L1 6238 6788 -685 5 1686 315 0 0 0 chr3 144315225 144315260 -15284523 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 5 1686 1753 287 130 29 chr3 144315260 144315537 -15284246 + Lx8 LINE L1 6789 7111 -362 5 1686 495 316 31 15 chr3 144315686 144315882 -15283901 + RMER15 LTR ERVL 363 561 -14 5 1686 931 123 30 96 chr3 144316245 144316443 -15283340 + B2_Mm2 SINE B2 1 185 -10 5 1686 21 0 0 0 chr3 144317361 144317382 -15282401 + AT_rich Low_complexity Low_complexity 1 21 0 5 1686 36150 46 0 3 chr3 144317386 144322771 -15277012 + L1Md_T LINE L1 123 5589 -297 5 1686 8663 31 0 0 chr3 144322771 144323767 -15276016 + L1Md_T LINE L1 5590 6585 0 5 1686 241 227 0 0 chr3 144323775 144323819 -15275964 + polypurine Low_complexity Low_complexity 3 46 0 5 1686 884 152 12 0 chr3 144323819 144323983 -15275800 + GA-rich Low_complexity Low_complexity 4 169 0 5 1686 2094 143 66 14 chr3 144324346 144324693 -15275090 - ORR1B2 LTR MaLR -2 365 1 5 1686 236 280 68 60 chr3 144324817 144324950 -15274833 + L3 LINE CR1 3746 3879 -610 5 1686 957 202 253 67 chr3 144325652 144325749 -15274034 - RLTR20C LTR ERVK 0 534 434 5 1686 450 0 0 0 chr3 144325749 144325799 -15273984 + (CA)n Simple_repeat Simple_repeat 1 50 0 5 1686 957 202 253 67 chr3 144325799 144326151 -15273632 - RLTR20C LTR ERVK -101 433 1 5 1686 2480 177 72 13 chr3 144326675 144327206 -15272577 - RMER15 LTR ERVL 0 575 14 5 1686 210 37 0 0 chr3 144328626 144328653 -15271130 + (TTTTG)n Simple_repeat Simple_repeat 1 27 0 5 1686 396 0 0 0 chr3 144328979 144329023 -15270760 + (TG)n Simple_repeat Simple_repeat 2 45 0 5 1686 685 253 16 70 chr3 144329028 144329270 -15270513 - B4 SINE B4 -18 274 46 5 1686 348 270 102 48 chr3 144329387 144329574 -15270209 + Charlie2a DNA MER1_type 5 201 -2660 5 1686 532 219 59 13 chr3 144329795 144329948 -15269835 + Charlie2a DNA MER1_type 1458 1617 -1244 5 1686 28 29 0 0 chr3 144329954 144329989 -15269794 + AT_rich Low_complexity Low_complexity 1 35 0 5 1686 218 371 31 0 chr3 144330640 144330737 -15269046 + L2c LINE L2 3251 3350 -37 5 1686 425 390 39 7 chr3 144331352 144331657 -15268126 + MLT1I LTR MaLR 93 407 -4 5 1686 706 280 159 16 chr3 144331902 144332337 -15267446 + MLT1D LTR MaLR 1 497 -8 5 1686 281 244 22 55 chr3 144332887 144332978 -15266805 + MLT1L LTR MaLR 120 207 -403 5 1686 298 277 77 43 chr3 144333703 144333820 -15265963 - L2a LINE L2 -5 3421 3301 5 1686 215 0 0 62 chr3 144333917 144333949 -15265834 + (TGGG)n Simple_repeat Simple_repeat 2 31 0 5 1686 643 266 8 59 chr3 144333954 144334190 -15265593 + RLTR11B LTR ERVK 16 239 -214 5 1686 504 0 0 0 chr3 144334197 144334253 -15265530 + (GA)n Simple_repeat Simple_repeat 1 56 0 5 1686 480 241 48 60 chr3 144334361 144334529 -15265254 + RLTR11B LTR ERVK 273 438 -15 5 1686 219 69 0 0 chr3 144334824 144334853 -15264930 + (CCCCG)n Simple_repeat Simple_repeat 1 29 0 5 1686 243 172 0 59 chr3 144334928 144334996 -15264787 - MER119 DNA MER1_type -75 508 445 5 1686 286 274 82 12 chr3 144334984 144335069 -15264714 - MER119 DNA MER1_type -449 134 44 5 1686 540 0 0 0 chr3 144335735 144335795 -15263988 + (TC)n Simple_repeat Simple_repeat 1 60 0 5 1686 2593 165 74 18 chr3 144336318 144336818 -15262965 - RLTR11A LTR ERVK 0 528 1 5 1686 246 264 140 9 chr3 144337132 144337239 -15262544 + MLT1F LTR MaLR 392 512 -36 5 1686 1703 246 52 31 chr3 144337969 144338448 -15261335 + Lx7 LINE L1 6918 7406 -290 5 1686 2134 145 111 115 chr3 144339702 144340233 -15259550 + RLTR24 LTR ERV1 1 529 0 5 1686 336 102 0 0 chr3 144340333 144340382 -15259401 + (TG)n Simple_repeat Simple_repeat 2 50 0 5 1686 287 146 18 0 chr3 144341631 144341686 -15258097 + (TG)n Simple_repeat Simple_repeat 1 56 0 5 1686 404 283 84 28 chr3 144341703 144341845 -15257938 - RSINE1 SINE B4 -10 155 6 5 1686 924 255 63 26 chr3 144342078 144342348 -15257435 - B4A SINE B4 -5 287 8 5 1686 259 182 0 0 chr3 144343783 144343827 -15255956 + B4 SINE B4 2 45 -247 5 1686 486 246 114 163 chr3 144343870 144344176 -15255607 + B4 SINE B4 2 292 0 5 1686 240 316 21 0 chr3 144344195 144344290 -15255493 - MIRm SINE MIR -148 128 32 5 1686 593 225 29 14 chr3 144346006 144346146 -15253637 + RSINE1 SINE B4 5 146 -19 5 1686 447 330 105 32 chr3 144346825 144347195 -15252588 + L4 LINE RTE 730 1126 -903 5 1686 2093 131 34 83 chr3 144347255 144347639 -15252144 + ORR1B2 LTR MaLR 1 365 -2 5 1686 307 276 129 0 chr3 144347928 144348044 -15251739 - MER5A DNA MER1_type -39 150 20 5 1686 1807 204 130 16 chr3 144348583 144348722 -15251061 - Lx9 LINE L1 -24 7620 7472 5 1686 198 0 0 0 chr3 144348722 144348744 -15251039 + (CA)n Simple_repeat Simple_repeat 2 23 0 5 1686 1807 204 130 16 chr3 144348744 144349097 -15250686 - Lx9 LINE L1 -173 7471 7072 5 1686 471 252 195 4 chr3 144349833 144350084 -15249699 + L1ME4a LINE L1 5653 5951 -173 5 1686 1014 152 5 21 chr3 144350397 144350585 -15249198 - URR1B DNA MER1_type -2 223 39 5 1686 192 309 28 42 chr3 144350889 144350960 -15248823 - MER5A DNA MER1_type -59 130 61 5 1686 191 216 59 0 chr3 144350966 144351017 -15248766 - MIRm SINE MIR -3 273 220 5 1686 24 0 0 0 chr3 144351088 144351112 -15248671 + AT_rich Low_complexity Low_complexity 1 24 0 5 1686 225 178 22 0 chr3 144351270 144351315 -15248468 - MER5A DNA MER1_type -116 73 28 5 1686 216 286 0 0 chr3 144352360 144352423 -15247360 + G-rich Low_complexity Low_complexity 3 65 0 5 1686 188 146 0 68 chr3 144353376 144353420 -15246363 + L2c LINE L2 3347 3387 0 5 1686 30 59 0 0 chr3 144354670 144354721 -15245062 + AT_rich Low_complexity Low_complexity 1 51 0 5 1686 22 35 0 0 chr3 144355099 144355128 -15244655 + AT_rich Low_complexity Low_complexity 1 29 0 5 1686 868 160 182 0 chr3 144356009 144356190 -15243593 - B3 SINE B2 0 216 3 5 1686 260 274 0 14 chr3 144356470 144356544 -15243239 + L2 LINE L2 778 850 -2569 5 1686 212 347 86 23 chr3 144356786 144357043 -15242740 + L2 LINE L2 1238 1510 -1909 5 1686 25 31 0 0 chr3 144357515 144357547 -15242236 + AT_rich Low_complexity Low_complexity 1 32 0 5 1686 27 49 0 0 chr3 144359298 144359339 -15240444 + AT_rich Low_complexity Low_complexity 1 41 0 5 1686 671 204 36 65 chr3 144359347 144359515 -15240268 - RSINE1 SINE B4 0 165 3 5 1686 306 0 0 0 chr3 144360285 144360319 -15239464 + (T)n Simple_repeat Simple_repeat 1 34 0 5 1686 186 43 0 0 chr3 144361550 144361573 -15238210 + (CCCTAA)n Simple_repeat Simple_repeat 6 28 0 5 1686 505 212 65 52 chr3 144361580 144361734 -15238049 + ORR1E LTR MaLR 176 331 -28 5 1686 24 53 0 0 chr3 144363694 144363732 -15236051 + AT_rich Low_complexity Low_complexity 1 38 0 5 1686 496 245 122 48 chr3 144363783 144364053 -15235730 - B4A SINE B4 0 292 3 5 1686 207 0 0 0 chr3 144365930 144365953 -15233830 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 5 1686 189 0 0 0 chr3 144366248 144366269 -15233514 + (CAAAAA)n Simple_repeat Simple_repeat 3 23 0 5 1686 3655 69 0 19 chr3 144367563 144368049 -15231734 - L1Md_F2 LINE L1 0 6582 6106 5 1686 21 89 0 0 chr3 144369707 144369763 -15230020 + AT_rich Low_complexity Low_complexity 1 56 0 5 1686 401 200 160 8 chr3 144370355 144370486 -15229297 + MTE2b LTR MaLR 2 152 -227 5 1686 848 141 7 0 chr3 144370610 144370759 -15229024 + (GA)n Simple_repeat Simple_repeat 1 150 0 5 1686 606 265 25 38 chr3 144371650 144371807 -15227976 + RSINE1 SINE B4 11 165 0 5 1686 236 292 56 0 chr3 144372371 144372460 -15227323 + B1F1 SINE Alu 4 97 -52 5 1686 22 0 0 0 chr3 144372741 144372763 -15227020 + AT_rich Low_complexity Low_complexity 1 22 0 5 1686 612 195 38 23 chr3 144373500 144373631 -15226152 + B1_Mur4 SINE Alu 18 150 0 5 1686 1176 61 0 7 chr3 144373927 144374076 -15225707 + B1_Mus1 SINE Alu 1 148 0 5 1686 478 190 140 7 chr3 144374597 144374740 -15225043 - L1_Mus4 LINE L1 -2 6634 6473 5 1686 1654 201 53 35 chr3 144374732 144375129 -15224654 + Lx5 LINE L1 6646 7049 -1 5 1686 521 264 23 98 chr3 144376382 144376427 -15223356 - B3A SINE B2 0 198 166 5 1686 1116 106 0 0 chr3 144376427 144376606 -15223177 + (TG)n Simple_repeat Simple_repeat 1 179 0 5 1686 521 264 23 98 chr3 144376606 144376774 -15223009 - B3A SINE B2 -33 165 1 5 1686 264 317 89 7 chr3 144377684 144377830 -15221953 - RSINE1 SINE B4 -5 160 3 6 1686 302 208 95 38 chr3 144378702 144378807 -15220976 + MTD LTR MaLR 309 419 0 6 1686 30 0 0 0 chr3 144382767 144382797 -15216986 + GC_rich Low_complexity Low_complexity 1 30 0 6 1686 224 246 32 24 chr3 144383021 144383146 -15216637 + (CGG)n Simple_repeat Simple_repeat 2 127 0 6 1686 27 0 0 0 chr3 144383292 144383319 -15216464 + GC_rich Low_complexity Low_complexity 1 27 0 6 1686 268 262 97 0 chr3 144385067 144385170 -15214613 - MER45B DNA Tip100 -113 927 815 6 1686 415 314 13 19 chr3 144385232 144385388 -15214395 - B3 SINE B2 -15 201 47 6 1686 189 107 0 0 chr3 144385859 144385887 -15213896 + (TTTTC)n Simple_repeat Simple_repeat 2 29 0 6 1686 764 176 29 29 chr3 144387172 144387312 -15212471 + B1_Mur1 SINE Alu 1 140 -9 6 1686 418 333 0 8 chr3 144387796 144387917 -15211866 + RSINE1 SINE B4 4 123 -42 6 1686 468 77 0 0 chr3 144387942 144388007 -15211776 + (CA)n Simple_repeat Simple_repeat 2 66 0 6 1686 298 325 55 22 chr3 144388245 144388430 -15211353 + MIRc SINE MIR 22 212 -56 6 1686 728 250 15 56 chr3 144388739 144388934 -15210849 + B3A SINE B2 12 198 0 6 1686 1097 266 158 28 chr3 144389185 144389545 -15210238 + MTD LTR MaLR 13 419 0 6 1686 838 206 69 25 chr3 144389631 144389835 -15209948 - B3 SINE B2 -1 215 3 6 1686 585 234 0 0 chr3 144389879 144389986 -15209797 - PB1D10 SINE Alu -1 116 10 6 1686 390 316 0 0 chr3 144389900 144389998 -15209785 - ID_B1 SINE B4 -48 176 79 6 1686 3277 61 7 17 chr3 144390145 144390563 -15209220 + L1_Mus1 LINE L1 6154 6567 0 6 1686 23 54 0 0 chr3 144391662 144391699 -15208084 + AT_rich Low_complexity Low_complexity 1 37 0 6 1686 212 122 24 0 chr3 144392469 144392510 -15207273 + (TAAA)n Simple_repeat Simple_repeat 3 44 0 6 1686 233 313 24 0 chr3 144392655 144392738 -15207045 - L2a LINE L2 0 3426 3342 6 1686 1614 53 0 11 chr3 144392964 144393153 -15206630 - B2_Mm2 SINE B2 -7 188 2 6 1686 2067 124 14 72 chr3 144394154 144394501 -15205282 + ORR1A4 LTR MaLR 1 327 -2 6 1686 1050 111 41 0 chr3 144394503 144394674 -15205109 + ORR1A4-int LTR MaLR 1 178 -1785 6 1686 4927 108 45 110 chr3 144394672 144395145 -15204638 + ORR1A4-int LTR MaLR 1063 1571 -392 6 1686 3434 29 39 0 chr3 144395145 144395526 -15204257 - MTA_Mm LTR MaLR 0 396 1 6 1686 9848 27 4 2 chr3 144395526 144396622 -15203161 - MTA_Mm-int LTR MaLR 0 1098 1 6 1686 3461 26 39 0 chr3 144396622 144397003 -15202780 - MTA_Mm LTR MaLR 0 396 1 6 1686 4927 108 45 110 chr3 144397003 144397491 -15202292 + ORR1A4-int LTR MaLR 1572 1961 -2 6 1686 1857 143 61 20 chr3 144397491 144397832 -15201951 + ORR1A4 LTR MaLR 38 392 -2 6 1686 901 211 75 5 chr3 144398155 144398355 -15201428 - B3 SINE B2 0 216 3 6 1686 258 206 44 0 chr3 144399112 144399172 -15200611 - ID4_ SINE ID -6 77 9 6 1686 210 105 26 26 chr3 144399383 144399422 -15200361 + (TCTA)n Simple_repeat Simple_repeat 3 41 0 6 1686 768 212 228 6 chr3 144400240 144400411 -15199372 + B3 SINE B2 2 210 -6 6 1686 279 93 0 0 chr3 144400749 144400792 -15198991 + (TCTA)n Simple_repeat Simple_repeat 2 44 0 6 1686 35320 70 20 11 chr3 144401182 144406542 -15193241 + L1Md_F2 LINE L1 236 5589 -297 6 1686 8289 59 9 1 chr3 144406542 144407529 -15192254 + L1Md_F2 LINE L1 5590 6584 -1 6 1686 256 308 0 30 chr3 144407689 144407756 -15192027 + U4 snRNA snRNA 4 68 -77 6 1686 928 275 108 13 chr3 144407769 144408167 -15191616 + L1M2 LINE L1 4352 4787 -1356 6 1686 23 33 0 0 chr3 144409096 144409126 -15190657 + AT_rich Low_complexity Low_complexity 1 30 0 6 1686 795 201 0 0 chr3 144409164 144409343 -15190440 + GA-rich Low_complexity Low_complexity 2 180 0 6 1686 214 316 12 73 chr3 144410061 144410143 -15189640 - ID2 SINE ID -6 77 1 6 1686 339 150 0 0 chr3 144410712 144410772 -15189011 + (TC)n Simple_repeat Simple_repeat 1 60 0 6 1686 396 0 0 0 chr3 144411082 144411126 -15188657 + (TC)n Simple_repeat Simple_repeat 1 44 0 6 1686 400 292 131 16 chr3 144411561 144411683 -15188100 - RSINE1 SINE B4 -29 136 1 6 1686 453 19 0 0 chr3 144413432 144413486 -15186297 + (CA)n Simple_repeat Simple_repeat 2 55 0 6 1686 2511 279 139 36 chr3 144415522 144416465 -15183318 + Lx8 LINE L1 6231 7270 -203 6 1686 269 360 7 42 chr3 144416632 144416774 -15183009 + B1F1 SINE Alu 11 147 -2 6 1686 358 211 0 0 chr3 144416789 144416846 -15182937 + ID4_ SINE ID 18 74 -9 6 1686 854 144 13 52 chr3 144417133 144417287 -15182496 - B1_Mus1 SINE Alu 0 148 1 6 1686 1055 83 19 6 chr3 144417302 144417459 -15182324 - L1_Mus3 LINE L1 -1 6637 6479 6 1686 273 119 0 0 chr3 144417536 144417578 -15182205 + (CATATA)n Simple_repeat Simple_repeat 4 45 0 6 1686 213 320 13 0 chr3 144418319 144418397 -15181386 - ID4_ SINE ID -4 79 1 6 1686 1039 288 18 14 chr3 144418622 144418907 -15180876 - B4 SINE B4 0 292 7 6 1686 2058 217 35 12 chr3 144418914 144419394 -15180389 + RLTR16 LTR ERVK 1 491 -14 6 1686 2063 75 58 112 chr3 144419582 144419912 -15179871 + L1_Mus2 LINE L1 6253 6564 -2 6 1686 862 304 25 29 chr3 144421612 144421886 -15177897 + B4A SINE B4 2 274 -18 6 1686 315 0 0 0 chr3 144421890 144421925 -15177858 + (CA)n Simple_repeat Simple_repeat 1 35 0 6 1686 26 0 0 0 chr3 144423314 144423340 -15176443 + AT_rich Low_complexity Low_complexity 1 26 0 6 1686 180 184 0 0 chr3 144423423 144423472 -15176311 + (TG)n Simple_repeat Simple_repeat 1 49 0 6 1686 252 77 0 0 chr3 144424770 144424809 -15174974 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 6 1686 341 123 17 17 chr3 144425375 144425433 -15174350 + RLTR17 LTR ERVK 98 155 -537 6 1686 464 196 44 63 chr3 144425619 144425777 -15174006 + RLTR43A LTR ERVK 210 364 0 6 1686 1100 83 7 0 chr3 144425907 144426052 -15173731 + B1_Mm SINE Alu 2 147 0 6 1686 270 0 0 0 chr3 144426056 144426086 -15173697 + (A)n Simple_repeat Simple_repeat 1 30 0 6 1686 209 173 19 19 chr3 144426399 144426452 -15173331 + A-rich Low_complexity Low_complexity 1 53 0 6 1686 1584 164 106 32 chr3 144426530 144426870 -15172913 - RMER16-int LTR ERVK -4811 595 231 6 1686 1089 76 19 6 chr3 144427016 144427174 -15172609 + L1_Mus3 LINE L1 6477 6636 -2 6 1686 198 0 0 0 chr3 144427260 144427282 -15172501 + (CAAA)n Simple_repeat Simple_repeat 3 24 0 6 1686 1393 210 23 4 chr3 144427284 144427542 -15172241 + ETnERV2-int LTR ERVK 4268 4530 -2876 6 1686 3443 193 19 16 chr3 144427607 144428277 -15171506 + ETnERV2-int LTR ERVK 5122 5793 -1613 6 1686 1069 169 25 15 chr3 144428320 144428518 -15171265 + RMER16-int LTR ERVK 3791 3990 -1416 6 1686 428 313 111 76 chr3 144429389 144429413 -15170370 + ETnERV2-int LTR ERVK 6489 6500 -419 6 1686 447 309 8 0 chr3 144429413 144429539 -15170244 + RodERV21-int LTR ERV1 4437 4563 -428 6 1686 428 313 111 76 chr3 144429539 144429769 -15170014 + ETnERV2-int LTR ERVK 6501 6619 -300 6 1686 1980 205 70 5 chr3 144429775 144430163 -15169620 + ETnERV2-int LTR ERVK 6646 7058 -348 6 1686 517 228 51 45 chr3 144430263 144430419 -15169364 + RLTR43A LTR ERVK 208 364 0 6 1686 686 205 8 0 chr3 144430419 144430546 -15169237 + RLTR17 LTR ERVK 141 268 -424 6 1686 8444 154 56 79 chr3 144430547 144432221 -15167562 + ETnERV3-int LTR ERVK 1378 3431 -3813 6 1686 228 35 0 0 chr3 144432221 144432250 -15167533 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 6 1686 8444 147 92 28 chr3 144432250 144433246 -15166537 + ETnERV3-int LTR ERVK 2965 3831 -1977 6 1686 753 33 0 0 chr3 144433246 144433338 -15166445 + (TC)n Simple_repeat Simple_repeat 1 92 0 6 1686 7700 147 92 28 chr3 144433338 144433594 -15166189 + RMER16-int LTR ERVK 2865 3114 -2292 6 1686 8360 44 1 2 chr3 144433613 144435284 -15164499 - L1Md_F2 LINE L1 -1 6581 4913 6 1686 11421 60 2 3 chr3 144435277 144437416 -15162367 - L1Md_F2 LINE L1 0 6582 4445 6 1686 17477 35 2 20 chr3 144437420 144440276 -15159507 - L1Md_T LINE L1 0 6582 3779 6 1686 3186 128 127 25 chr3 144440278 144440871 -15158912 + RMER16-int LTR ERVK 3524 4176 -1230 6 1686 405 254 8 54 chr3 144440868 144440997 -15158786 + ETnERV2-int LTR ERVK 6086 6208 -1198 6 1686 393 273 168 12 chr3 144441163 144441330 -15158453 + ETnERV2-int LTR ERVK 6233 6425 -981 6 1687 307 131 0 103 chr3 144441532 144441600 -15158183 + ETnERV2-int LTR ERVK 7327 7387 -19 6 1687 2200 132 35 58 chr3 144441613 144441990 -15157793 + RLTR9A LTR ERVK 1 368 0 6 1687 15294 91 21 14 chr3 144444329 144447207 -15152576 - L1VL2 LINE L1 -378 3237 338 6 1687 3253 67 15 0 chr3 144447217 144447607 -15152176 - MTB LTR MaLR 0 400 5 6 1687 264 333 123 16 chr3 144447686 144447808 -15151975 + Charlie1a DNA MER1_type 9 143 -1312 6 1687 506 298 72 13 chr3 144447787 144447940 -15151843 + ID_B1 SINE B4 10 171 -53 6 1687 599 141 0 0 chr3 144448181 144448273 -15151510 + RMER4B LTR ERVK 277 368 -217 6 1687 255 339 21 99 chr3 144448290 144448431 -15151352 - MLT1J LTR MaLR -173 339 210 6 1687 304 276 94 0 chr3 144448953 144449080 -15150703 - MER45B DNA Tip100 -113 927 789 6 1687 470 307 13 19 chr3 144449127 144449283 -15150500 - B3 SINE B2 -15 201 47 6 1687 308 190 93 23 chr3 144449819 144449905 -15149878 - PB1D7 SINE Alu -1 119 28 6 1687 230 247 0 76 chr3 144450743 144450835 -15148948 - L1MC5 LINE L1 -246 7715 7631 6 1687 826 178 29 29 chr3 144451112 144451251 -15148532 + B1_Mur1 SINE Alu 2 140 -9 6 1687 2195 125 91 16 chr3 144451259 144451557 -15148226 + RLTR9E LTR ERVK 1 318 -91 6 1687 522 0 0 0 chr3 144451557 144451615 -15148168 + (TC)n Simple_repeat Simple_repeat 1 58 0 6 1687 2195 125 91 16 chr3 144451615 144451691 -15148092 + RLTR9E LTR ERVK 319 401 -8 6 1687 3093 38 3 3 chr3 144452115 144452461 -15147322 + ORR1A1 LTR MaLR 1 346 0 6 1687 506 344 0 8 chr3 144452525 144452657 -15147126 + RSINE1 SINE B4 4 134 -31 6 1687 435 38 0 0 chr3 144452671 144452724 -15147059 + (CA)n Simple_repeat Simple_repeat 2 54 0 6 1687 266 303 0 0 chr3 144453027 144453093 -15146690 + MIRc SINE MIR 87 152 -116 6 1687 493 259 9 0 chr3 144453453 144453561 -15146222 + B3A SINE B2 12 120 -78 6 1687 693 279 104 18 chr3 144453729 144454073 -15145710 + MTD LTR MaLR 1 407 -14 6 1687 883 209 58 19 chr3 144454159 144454364 -15145419 - B3 SINE B2 -1 215 3 6 1687 528 271 0 0 chr3 144454407 144454514 -15145269 - PB1D10 SINE Alu -1 116 10 6 1687 337 357 0 0 chr3 144454428 144454526 -15145257 - ID_B1 SINE B4 -48 176 79 6 1687 3325 68 5 2 chr3 144454672 144455085 -15144698 + L1_Mus1 LINE L1 6154 6567 0 6 1687 212 122 24 0 chr3 144455390 144455431 -15144352 + (TAAA)n Simple_repeat Simple_repeat 3 44 0 6 1687 4320 73 50 5 chr3 144455441 144456023 -15143760 + L1Md_F2 LINE L1 392 999 -5617 7 1687 18280 69 6 1 chr3 144456017 144458376 -15141407 + L1Md_F2 LINE L1 3218 5586 -297 7 1687 8782 48 0 1 chr3 144458376 144459371 -15140412 + L1Md_F2 LINE L1 5587 6580 -2 7 1687 27 81 0 0 chr3 144459377 144459439 -15140344 + AT_rich Low_complexity Low_complexity 1 62 0 7 1687 207 354 12 0 chr3 144459521 144459603 -15140180 - L2a LINE L2 0 3426 3344 7 1687 1442 102 0 11 chr3 144459829 144460018 -15139765 - B2_Mm2 SINE B2 -7 188 2 7 1687 1956 137 14 72 chr3 144461018 144461365 -15138418 + ORR1A4 LTR MaLR 1 327 -2 7 1687 1156 76 41 0 chr3 144461367 144461538 -15138245 + ORR1A4-int LTR MaLR 1 178 -1785 7 1687 5043 120 29 100 chr3 144461536 144462506 -15137277 + ORR1A4-int LTR MaLR 1063 1963 0 7 1687 1872 153 65 20 chr3 144462506 144462846 -15136937 + ORR1A4 LTR MaLR 38 392 -2 7 1687 962 182 80 5 chr3 144463179 144463378 -15136405 - B3 SINE B2 0 216 3 7 1687 21 57 0 0 chr3 144463761 144463796 -15135987 + AT_rich Low_complexity Low_complexity 1 35 0 7 1687 258 206 44 0 chr3 144464129 144464189 -15135594 - ID4_ SINE ID -6 77 9 7 1687 214 143 23 23 chr3 144464399 144464442 -15135341 + (TCTA)n Simple_repeat Simple_repeat 3 45 0 7 1687 780 206 228 6 chr3 144465269 144465440 -15134343 + B3 SINE B2 2 210 -6 7 1687 405 0 0 0 chr3 144465778 144465823 -15133960 + (TATG)n Simple_repeat Simple_repeat 4 48 0 7 1687 282 56 0 0 chr3 144465826 144465862 -15133921 + (TCTG)n Simple_repeat Simple_repeat 1 36 0 7 1687 1001 287 91 7 chr3 144466436 144466874 -15132909 + L1M2 LINE L1 4313 4787 -1356 7 1687 23 33 0 0 chr3 144468035 144468065 -15131718 + AT_rich Low_complexity Low_complexity 1 30 0 7 1687 889 142 6 6 chr3 144468094 144468264 -15131519 + GA-rich Low_complexity Low_complexity 1 170 0 7 1687 372 133 0 0 chr3 144469624 144469684 -15130099 + (TC)n Simple_repeat Simple_repeat 1 60 0 7 1687 216 0 0 0 chr3 144469992 144470016 -15129767 + (TC)n Simple_repeat Simple_repeat 1 24 0 7 1687 272 83 21 0 chr3 144470016 144470063 -15129720 + (CA)n Simple_repeat Simple_repeat 1 49 0 7 1687 23 0 0 0 chr3 144470452 144470475 -15129308 + AT_rich Low_complexity Low_complexity 1 23 0 7 1687 414 263 175 0 chr3 144470483 144470597 -15129186 - RSINE1 SINE B4 -31 134 1 7 1687 345 24 0 0 chr3 144472332 144472374 -15127409 + (CA)n Simple_repeat Simple_repeat 2 43 0 7 1687 217 355 70 19 chr3 144472459 144472617 -15127166 + MIRb SINE MIR 99 264 -4 7 1687 2332 285 148 29 chr3 144474236 144475165 -15124618 + Lx8 LINE L1 6231 7270 -203 7 1687 281 353 7 42 chr3 144475334 144475476 -15124307 + B1F1 SINE Alu 11 147 -2 7 1687 340 218 0 0 chr3 144475491 144475546 -15124237 + ID4_ SINE ID 20 74 -9 7 1687 871 137 13 52 chr3 144475839 144475993 -15123790 - B1_Mus1 SINE Alu 0 148 1 7 1687 1056 83 19 6 chr3 144476008 144476165 -15123618 - L1_Mus3 LINE L1 -1 6637 6479 7 1687 240 214 0 0 chr3 144476242 144476298 -15123485 + (CATATA)n Simple_repeat Simple_repeat 2 57 0 7 1687 1003 275 36 18 chr3 144477335 144477616 -15122167 - B4 SINE B4 0 292 7 7 1687 2008 226 35 12 chr3 144477623 144478103 -15121680 + RLTR16 LTR ERVK 1 491 -14 7 1687 1839 72 61 115 chr3 144478291 144478621 -15121162 + L1_Mus2 LINE L1 6253 6564 -2 7 1687 24 32 0 0 chr3 144479058 144479089 -15120694 + AT_rich Low_complexity Low_complexity 1 31 0 7 1687 918 293 25 29 chr3 144480356 144480630 -15119153 + B4A SINE B4 2 274 -18 7 1687 405 0 0 0 chr3 144480634 144480679 -15119104 + (CA)n Simple_repeat Simple_repeat 1 45 0 7 1687 25 0 0 0 chr3 144482062 144482087 -15117696 + AT_rich Low_complexity Low_complexity 1 25 0 7 1687 201 163 0 0 chr3 144482170 144482219 -15117564 + (TG)n Simple_repeat Simple_repeat 1 49 0 7 1687 233 333 53 18 chr3 144482786 144482899 -15116884 + MIRb SINE MIR 112 228 -40 7 1687 987 9 0 0 chr3 144482956 144483068 -15116715 + (GAA)n Simple_repeat Simple_repeat 3 114 0 7 1687 338 70 137 14 chr3 144483088 144483161 -15116622 + RMER4A LTR ERVK 1 82 -384 7 1687 337 293 146 6 chr3 144483161 144483319 -15116464 + B3A SINE B2 1 180 -18 7 1687 231 250 0 18 chr3 144483948 144484005 -15115778 + MIRc SINE MIR 106 161 -107 7 1687 473 276 0 8 chr3 144484601 144484718 -15115065 - PB1D9 SINE Alu -1 119 4 7 1687 803 90 36 13 chr3 144487385 144487694 -15112089 + (TCTA)n Simple_repeat Simple_repeat 1 316 0 7 1687 282 301 106 42 chr3 144488571 144488713 -15111070 + L2c LINE L2 3237 3387 0 7 1687 1291 61 0 0 chr3 144489318 144489466 -15110317 + B1_Mus1 SINE Alu 1 148 0 7 1687 408 156 0 0 chr3 144489467 144489557 -15110226 + A-rich Low_complexity Low_complexity 1 90 0 7 1687 999 200 33 40 chr3 144489669 144490124 -15109659 + RMER17C LTR ERVK 1 405 -5 7 1687 238 274 68 0 chr3 144490633 144490706 -15109077 - ID4 SINE ID -3 80 3 7 1687 832 69 250 0 chr3 144491153 144491269 -15108514 - B1_Mus2 SINE Alu -1 146 2 7 1687 36357 37 1 1 chr3 144491355 144497784 -15101999 + L1Md_T LINE L1 1 5589 -297 7 1687 9300 20 0 0 chr3 144497784 144498780 -15101003 + L1Md_T LINE L1 5590 6585 0 7 1687 23 86 0 0 chr3 144498835 144498893 -15100890 + AT_rich Low_complexity Low_complexity 1 58 0 7 1687 1394 157 178 13 chr3 144498993 144499296 -15100487 + ORR1B1 LTR MaLR 1 353 -41 7 1687 1241 88 0 0 chr3 144499296 144499443 -15100340 + B1_Mus2 SINE Alu 1 147 0 7 1687 225 0 0 0 chr3 144502251 144502276 -15097507 + (CA)n Simple_repeat Simple_repeat 2 26 0 1 1687 408 40 0 0 chr3 144502276 144502325 -15097458 + (TATG)n Simple_repeat Simple_repeat 2 51 0 2 1687 225 271 67 67 chr3 144502451 144502526 -15097257 + B4 SINE B4 3 77 -215 3 1687 914 236 20 10 chr3 144502462 144502663 -15097120 + B3 SINE B2 14 216 0 4 1687 1402 200 22 106 chr3 144502891 144503260 -15096523 - Lx6 LINE L1 -55 7405 7068 5 1687 355 239 13 72 chr3 144503409 144503474 -15096309 + RMER17C LTR ERVK 129 184 -226 6 1687 1117 91 17 0 chr3 144503474 144503650 -15096133 + (TCTCC)n Simple_repeat Simple_repeat 2 180 0 7 1687 355 239 13 72 chr3 144503650 144503737 -15096046 + RMER17C LTR ERVK 185 272 -138 6 1687 1048 102 4 4 chr3 144503739 144503966 -15095817 + (GAA)n Simple_repeat Simple_repeat 1 227 0 8 1687 430 314 24 8 chr3 144504026 144504151 -15095632 - PB1 SINE Alu 0 127 1 9 1687 23 0 0 0 chr3 144504300 144504323 -15095460 + AT_rich Low_complexity Low_complexity 1 23 0 1 1687 2012 272 57 39 chr3 144505335 144505810 -15093973 + L1MA5 LINE L1 5168 5671 -629 1 1687 1076 47 29 11 chr3 144505810 144505984 -15093799 + (TCTA)n Simple_repeat Simple_repeat 4 180 0 1 1687 2012 288 54 28 chr3 144505984 144506606 -15093177 + L1MA5 LINE L1 5672 6300 0 1 1687 30 0 0 0 chr3 144506653 144506683 -15093100 + AT_rich Low_complexity Low_complexity 1 30 0 1 1687 258 319 0 14 chr3 144507616 144507689 -15092094 - ID4 SINE ID -7 76 5 1 1687 597 83 0 0 chr3 144508298 144508382 -15091401 + (TA)n Simple_repeat Simple_repeat 2 85 0 1 1687 252 86 0 0 chr3 144508711 144508746 -15091037 + (ACTG)n Simple_repeat Simple_repeat 2 36 0 1 1687 245 233 0 0 chr3 144511987 144512047 -15087736 + (TG)n Simple_repeat Simple_repeat 1 60 0 1 1687 185 325 0 46 chr3 144513114 144513201 -15086582 + MIRb SINE MIR 173 255 -13 1 1687 331 287 35 0 chr3 144513532 144513619 -15086164 + MIRb SINE MIR 117 206 -62 1 1687 180 0 0 0 chr3 144514672 144514692 -15085091 + (TCCC)n Simple_repeat Simple_repeat 3 22 0 2 1687 388 300 46 0 chr3 144514703 144514833 -15084950 - ID_B1 SINE B4 -3 221 86 2 1687 3987 71 6 15 chr3 144514901 144515444 -15084339 - L1Md_F2 LINE L1 -1 6581 6044 2 1687 901 88 13 13 chr3 144515434 144515584 -15084199 + L1Md_F2 LINE L1 6432 6581 -1 2 1687 444 104 0 0 chr3 144515592 144515659 -15084124 + (A)n Simple_repeat Simple_repeat 1 67 0 2 1687 26 0 0 0 chr3 144516102 144516128 -15083655 + AT_rich Low_complexity Low_complexity 1 26 0 2 1687 279 254 0 0 chr3 144516364 144516419 -15083364 + B3A SINE B2 1 55 -143 2 1687 15232 73 3 0 chr3 144516441 144519107 -15080676 - L1_Mus1 LINE L1 -181 6386 3711 2 1687 7141 110 37 9 chr3 144519097 144520890 -15078893 - L1_Mus1 LINE L1 -3555 2328 480 2 1687 3086 39 164 0 chr3 144520890 144521298 -15078485 - IAPLTR2_Mm LTR ERVK 0 475 1 2 1687 3764 130 84 25 chr3 144521298 144521314 -15078469 - L1_Mus1 LINE L1 -6137 479 467 2 1687 1032 81 0 0 chr3 144521920 144522056 -15077727 - BGLII LTR ERVK 0 421 286 2 1687 2242 60 0 0 chr3 144522054 144522335 -15077448 - MT2B2 LTR ERVL -303 281 1 3 1687 235 65 43 0 chr3 144523306 144523352 -15076431 + (TTATA)n Simple_repeat Simple_repeat 3 50 0 3 1687 537 272 161 30 chr3 144523360 144523749 -15076034 - L1MA5 LINE L1 -369 5931 5427 3 1687 565 286 57 0 chr3 144524098 144524238 -15075545 + RSINE1 SINE B4 16 163 -2 3 1687 285 253 0 0 chr3 144524243 144524330 -15075453 + (TA)n Simple_repeat Simple_repeat 1 87 0 3 1687 206 81 0 51 chr3 144525335 144525374 -15074409 + (TTTA)n Simple_repeat Simple_repeat 4 40 0 3 1687 1069 122 0 0 chr3 144525374 144525522 -15074261 - B1_Mus1 SINE Alu 0 148 1 3 1687 475 250 32 40 chr3 144526240 144526365 -15073418 - ID_B1 SINE B4 -13 211 88 3 1687 243 0 0 0 chr3 144526861 144526888 -15072895 + (A)n Simple_repeat Simple_repeat 1 27 0 3 1687 1166 97 6 0 chr3 144527558 144527733 -15072050 + (TTCTC)n Simple_repeat Simple_repeat 1 176 0 3 1687 288 283 75 56 chr3 144528063 144528224 -15071559 + RNLTR23 LTR ERVK 478 641 -1 4 1687 358 19 18 36 chr3 144528230 144528286 -15071497 + (CAAA)n Simple_repeat Simple_repeat 2 56 0 4 1687 228 86 0 0 chr3 144530642 144530677 -15069106 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 4 1687 23513 16 0 0 chr3 144531543 144535110 -15064673 - L1Md_T LINE L1 0 6582 3017 4 1687 230 367 47 13 chr3 144536154 144536303 -15063480 + L2b LINE L2 3215 3368 -7 4 1687 400 242 59 20 chr3 144537018 144537119 -15062664 - ID_B1 SINE B4 -11 213 109 4 1687 448 347 0 0 chr3 144538195 144538342 -15061441 - RSINE1 SINE B4 -15 150 4 4 1687 256 269 30 0 chr3 144538389 144538456 -15061327 - RSINE1 SINE B4 -9 156 88 4 1687 275 215 202 0 chr3 144539144 144539223 -15060560 - PB1D10 SINE Alu -1 116 22 4 1687 246 242 65 0 chr3 144539952 144540014 -15059769 - MIR SINE MIR -19 243 178 4 1687 22 0 0 0 chr3 144540118 144540140 -15059643 + AT_rich Low_complexity Low_complexity 1 22 0 5 1687 216 0 0 0 chr3 144540531 144540555 -15059228 + (CAAAA)n Simple_repeat Simple_repeat 3 26 0 5 1687 205 178 0 0 chr3 144540559 144540604 -15059179 + A-rich Low_complexity Low_complexity 1 45 0 5 1687 553 244 32 16 chr3 144541509 144541634 -15058149 + RSINE1 SINE B4 4 130 -35 5 1687 437 135 39 16 chr3 144541643 144541771 -15058012 + GA-rich Low_complexity Low_complexity 2 132 0 5 1687 240 287 69 79 chr3 144541944 144542133 -15057650 + MER106A DNA MER1_type 49 235 -1 5 1687 232 301 82 0 chr3 144542219 144542292 -15057491 - MIRc SINE MIR -154 114 36 5 1687 30602 87 15 12 chr3 144542846 144548204 -15051579 + L1Md_F2 LINE L1 218 5586 -297 5 1687 7849 62 4 1 chr3 144548205 144549196 -15050587 + L1Md_F2 LINE L1 5588 6581 -1 5 1687 217 196 0 35 chr3 144549886 144549944 -15049839 + A-rich Low_complexity Low_complexity 2 57 0 5 1687 239 71 24 0 chr3 144550483 144550525 -15049258 + (CAAAA)n Simple_repeat Simple_repeat 3 45 0 5 1687 244 287 75 102 chr3 144551372 144551667 -15048116 + L2 LINE L2 2412 2698 -721 6 1687 200 319 91 41 chr3 144551741 144551862 -15047921 + L2 LINE L2 2787 2913 -506 6 1687 182 314 42 14 chr3 144552162 144552233 -15047550 - L3 LINE CR1 -1389 3100 3028 6 1687 498 48 12 23 chr3 144553962 144554048 -15045735 - L1_Mus3 LINE L1 -1 6637 6553 6 1687 1203 225 14 120 chr3 144554048 144554484 -15045299 + RMER15 LTR ERVL 1 278 -297 6 1687 1085 29 0 14 chr3 144554380 144554519 -15045264 + B1_Mus1 SINE Alu 10 146 -2 6 1687 1122 150 135 0 chr3 144554569 144554769 -15045014 + RMER15 LTR ERVL 311 537 -38 6 1687 1061 262 4 0 chr3 144554821 144555069 -15044714 + RMER15-int LTR ERVL 1 249 -4750 6 1687 2812 214 78 5 chr3 144555083 144555722 -15044061 + RMER15-int LTR ERVL 797 1482 -3517 6 1687 2727 235 35 25 chr3 144555824 144556229 -15043554 + RMER15-int LTR ERVL 1648 2057 -2942 6 1687 4129 89 23 2 chr3 144556229 144556801 -15042982 - MT2B2 LTR ERVL 0 584 1 6 1687 2727 235 35 25 chr3 144556801 144557129 -15042654 + RMER15-int LTR ERVL 2058 2389 -2610 6 1687 1606 290 88 26 chr3 144557244 144557983 -15041800 + Lx8 LINE L1 6250 7034 -439 6 1687 359 91 0 0 chr3 144557984 144558039 -15041744 + RMER15 LTR ERVL 3 57 -518 6 1687 1752 188 81 24 chr3 144558209 144558579 -15041204 + MTD LTR MaLR 11 401 -18 6 1687 1878 67 12 27 chr3 144558854 144558878 -15040905 + L1_Mus1 LINE L1 6313 6339 -228 6 1687 2580 57 27 124 chr3 144558878 144559282 -15040501 - RLTR10B2 LTR ERVK 0 365 1 7 1687 1878 67 12 27 chr3 144559282 144559548 -15040235 + L1_Mus1 LINE L1 6340 6567 0 6 1687 394 275 191 24 chr3 144559557 144559803 -15039980 - L1MC3 LINE L1 -44 7741 7455 7 1687 21 0 0 0 chr3 144559836 144559857 -15039926 + AT_rich Low_complexity Low_complexity 1 21 0 7 1687 871 322 94 14 chr3 144560004 144560514 -15039269 - Lx8 LINE L1 -145 7328 6778 7 1687 222 232 30 20 chr3 144561146 144561233 -15038550 + T-rich Low_complexity Low_complexity 16 103 0 7 1687 5628 93 38 6 chr3 144561233 144562079 -15037704 - Lx3A LINE L1 0 6981 6109 7 1687 222 232 30 20 chr3 144562079 144562092 -15037691 + T-rich Low_complexity Low_complexity 3 15 0 7 1687 21 0 0 0 chr3 144562148 144562169 -15037614 + AT_rich Low_complexity Low_complexity 1 21 0 7 1687 10116 76 8 10 chr3 144562332 144563855 -15035928 - MusHAL1 LINE L1 0 2712 1192 7 1687 313 261 207 103 chr3 144563855 144564116 -15035667 + RLTR9A LTR ERVK 1 288 -80 7 1687 183 139 0 0 chr3 144564440 144564476 -15035307 + (GA)n Simple_repeat Simple_repeat 1 36 0 8 1687 4585 164 38 28 chr3 144564502 144565638 -15034145 + RMER16-int LTR ERVK 292 2175 -5231 8 1687 346 291 0 9 chr3 144565640 144565751 -15034032 + ETnERV-int LTR ERVK 1067 1176 -2138 8 1687 439 266 33 50 chr3 144565943 144566125 -15033658 + RMER16-int LTR ERVK 2474 2652 -4754 8 1687 1600 126 22 14 chr3 144566296 144566580 -15033203 + RMER16-int LTR ERVK 1566 1838 -3568 8 1687 9329 129 23 13 chr3 144566584 144568215 -15031568 + RMER16-int LTR ERVK 2691 4338 -1068 8 1687 428 312 21 63 chr3 144568210 144568497 -15031286 + RLTR6-int LTR ERV1 7387 7661 -117 8 1687 505 230 180 116 chr3 144568856 144569200 -15030583 + RLTR9A LTR ERVK 1 366 -2 8 1687 7295 81 19 9 chr3 144569201 144570326 -15029457 - MusHAL1 LINE L1 -1515 1197 62 8 1687 369 0 0 0 chr3 144570326 144570367 -15029416 + (TTCC)n Simple_repeat Simple_repeat 1 41 0 8 1687 1044 141 0 0 chr3 144570367 144570544 -15029239 + (TTTC)n Simple_repeat Simple_repeat 3 179 0 8 1687 758 150 22 22 chr3 144570544 144570680 -15029103 - B1_Mus1 SINE Alu -12 136 1 8 1687 974 91 0 0 chr3 144570680 144570845 -15028938 - L1VL4 LINE L1 -5385 917 753 8 1687 270 0 0 0 chr3 144570852 144570882 -15028901 + (TTTA)n Simple_repeat Simple_repeat 1 30 0 9 1687 1002 118 46 0 chr3 144570882 144571035 -15028748 - B2_Mm2 SINE B2 -34 161 2 9 1687 3574 142 3 0 chr3 144571037 144571609 -15028174 - L1VL4 LINE L1 -5536 766 193 8 1687 256 169 86 49 chr3 144571699 144571780 -15028003 - B3 SINE B2 -8 208 125 9 1688 377 39 20 0 chr3 144572564 144572615 -15027168 + (TTATA)n Simple_repeat Simple_repeat 2 53 0 9 1688 566 248 106 32 chr3 144572660 144573022 -15026761 - Lx7 LINE L1 -1826 5870 5462 9 1688 521 360 14 0 chr3 144573365 144573512 -15026271 + RSINE1 SINE B4 17 165 0 9 1688 323 212 12 0 chr3 144573514 144573599 -15026184 + (CATATA)n Simple_repeat Simple_repeat 1 86 0 9 1688 509 191 80 18 chr3 144574640 144574752 -15025031 - PB1D9 SINE Alu 0 120 2 9 1688 210 350 70 70 chr3 144575477 144575490 -15024293 - FAM SINE Alu -41 270 142 9 1688 491 252 9 43 chr3 144575490 144575606 -15024177 - ID_B1 SINE B4 -25 199 88 9 1688 318 50 0 0 chr3 144576627 144576667 -15023116 + (TA)n Simple_repeat Simple_repeat 1 40 0 1 1688 503 66 13 0 chr3 144576950 144577026 -15022757 + (TTTTC)n Simple_repeat Simple_repeat 2 78 0 1 1688 189 283 33 0 chr3 144578114 144578174 -15021609 - MIR SINE MIR -3 259 198 1 1688 189 0 0 0 chr3 144578634 144578655 -15021128 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 1 1688 3241 33 5 15 chr3 144578735 144579140 -15020643 + L1Md_F3 LINE L1 6184 6584 0 1 1688 3835 65 0 0 chr3 144580077 144580552 -15019231 + MT2C_Mm LTR ERVL 1 475 0 1 1688 252 0 0 0 chr3 144580565 144580593 -15019190 + (T)n Simple_repeat Simple_repeat 1 28 0 1 1688 446 279 120 58 chr3 144581132 144581531 -15018252 - L1MA8 LINE L1 -22 6269 5846 1 1688 223 50 49 24 chr3 144582048 144582089 -15017694 + (CAAAC)n Simple_repeat Simple_repeat 2 43 0 1 1688 2958 55 5 2 chr3 144582414 144582813 -15016970 + L1Md_F2 LINE L1 5187 5586 -297 1 1688 7819 51 12 4 chr3 144582813 144583799 -15015984 + L1Md_F2 LINE L1 5587 6580 -2 1 1688 356 300 50 0 chr3 144585466 144585566 -15014217 - ID_B1 SINE B4 -11 213 109 1 1688 584 333 0 0 chr3 144586707 144586854 -15012929 - RSINE1 SINE B4 -15 150 4 1 1688 423 0 0 0 chr3 144586895 144586942 -15012841 + (TG)n Simple_repeat Simple_repeat 1 47 0 1 1688 285 282 282 0 chr3 144586942 144587045 -15012738 - RSINE1 SINE B4 -26 139 8 1 1688 351 195 169 0 chr3 144587686 144587763 -15012020 - PB1D10 SINE Alu -6 111 22 1 1688 222 37 0 0 chr3 144587813 144587840 -15011943 + (T)n Simple_repeat Simple_repeat 1 27 0 1 1688 1673 26 0 0 chr3 144587840 144588033 -15011750 - B2_Mm1t SINE B2 0 193 1 1 1688 204 40 0 0 chr3 144588866 144588891 -15010892 + (CAT)n Simple_repeat Simple_repeat 3 27 0 1 1688 575 193 58 16 chr3 144590264 144590385 -15009398 + RSINE1 SINE B4 4 129 -36 1 1688 621 72 72 7 chr3 144590395 144590548 -15009235 + GA-rich Low_complexity Low_complexity 2 164 0 1 1688 287 271 52 71 chr3 144590779 144590934 -15008849 + MER106A DNA MER1_type 84 235 -1 1 1688 220 316 79 0 chr3 144591021 144591097 -15008686 - MIRc SINE MIR -154 114 33 1 1688 291 54 0 0 chr3 144591439 144591476 -15008307 + (A)n Simple_repeat Simple_repeat 1 37 0 1 1688 1104 95 0 0 chr3 144592135 144592282 -15007501 - B1_Mm SINE Alu 0 147 1 1 1688 24 0 0 0 chr3 144592571 144592595 -15007188 + AT_rich Low_complexity Low_complexity 1 24 0 1 1688 279 293 0 0 chr3 144593033 144593091 -15006692 + MER91C DNA Tip100 2 59 -81 1 1688 187 320 114 67 chr3 144594053 144594395 -15005388 + L2 LINE L2 2315 2672 -747 1 1688 342 0 0 0 chr3 144595735 144595773 -15004010 + (TTTA)n Simple_repeat Simple_repeat 4 41 0 1 1688 936 293 95 12 chr3 144595981 144596403 -15003380 - Lx8 LINE L1 -238 7235 6779 1 1688 282 53 17 51 chr3 144597052 144597111 -15002672 + (TTTTTA)n Simple_repeat Simple_repeat 1 57 0 1 1688 5143 132 26 1 chr3 144597116 144597964 -15001819 - Lx3A LINE L1 -4 6977 6109 1 1688 2405 98 0 3 chr3 144598200 144598579 -15001204 - MusHAL1 LINE L1 -1 2711 2334 1 1688 1948 79 0 0 chr3 144598572 144598850 -15000933 - L1Md_F LINE L1 -2988 2895 2618 1 1688 2564 31 2 259 chr3 144598850 144599375 -15000408 + RLTR10 LTR ERVK 1 390 0 1 1688 4128 31 0 0 chr3 144599385 144599895 -14999888 + RLTR10-int LTR ERVK 41 550 -1437 1 1688 13196 20 4 4 chr3 144599894 144601475 -14998308 + RLTR10-int LTR ERVK 404 1984 -3 1 1688 2529 36 2 259 chr3 144601477 144602002 -14997781 + RLTR10 LTR ERVK 1 390 0 1 1688 9692 101 28 5 chr3 144602002 144604109 -14995674 - L1Md_F LINE L1 -3260 2623 466 1 1688 2373 129 27 22 chr3 144604109 144604522 -14995261 - RLTR9F LTR ERVK 0 415 1 1 1688 5554 168 31 34 chr3 144604813 144606660 -14993123 - ETnERV2-int LTR ERVK -977 6429 3500 1 1688 7376 68 0 7 chr3 144606688 144608392 -14991391 - L1Md_F2 LINE L1 -12 6570 4880 1 1688 5297 136 29 6 chr3 144608392 144609370 -14990413 - ETnERV2-int LTR ERVK -3911 3495 2496 1 1688 5012 111 69 16 chr3 144609395 144610304 -14989479 - ETnERV2-int LTR ERVK -5321 2085 1129 1 1688 666 167 47 53 chr3 144610306 144610477 -14989306 + L1Md_F LINE L1 1 170 -6349 1 1688 2368 118 23 71 chr3 144610478 144610914 -14988869 + RLTR9F LTR ERVK 1 415 0 1 1688 8792 123 28 18 chr3 144611041 144612434 -14987349 + RMER16-int LTR ERVK 2690 4096 -1310 1 1688 4251 136 4 25 chr3 144612434 144612535 -14987248 - L1VL4 LINE L1 -5444 858 761 1 1688 1126 128 72 6 chr3 144612535 144612716 -14987067 - B2_Mm2 SINE B2 -1 194 2 1 1688 4251 136 4 25 chr3 144612716 144613294 -14986489 - L1VL4 LINE L1 -5542 760 193 1 1688 27 0 0 0 chr3 144613371 144613398 -14986385 + AT_rich Low_complexity Low_complexity 1 27 0 1 1688 207 87 109 0 chr3 144614240 144614286 -14985497 + (TTATA)n Simple_repeat Simple_repeat 3 53 0 1 1688 579 259 90 22 chr3 144614302 144614713 -14985070 - L1MA4 LINE L1 -377 5923 5458 1 1688 324 0 0 0 chr3 144615014 144615050 -14984733 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 1 1688 537 340 14 0 chr3 144615061 144615208 -14984575 + RSINE1 SINE B4 16 164 -1 1 1688 26 0 0 0 chr3 144615485 144615511 -14984272 + AT_rich Low_complexity Low_complexity 1 26 0 1 1688 231 36 0 0 chr3 144616184 144616212 -14983571 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 1 1688 551 95 29 69 chr3 144616217 144616319 -14983464 - B1_Mm SINE Alu -8 139 42 1 1688 264 0 0 159 chr3 144616322 144616454 -14983329 + (CTCTG)n Simple_repeat Simple_repeat 5 115 0 1 1688 337 107 0 67 chr3 144616455 144616515 -14983268 - B1_Mus1 SINE Alu -88 60 5 1 1688 501 274 0 39 chr3 144617228 144617357 -14982426 - ID_B1 SINE B4 -13 211 88 1 1688 1776 31 0 0 chr3 144619777 144619969 -14979814 - B2_Mm1a SINE B2 0 193 2 1 1688 198 0 0 0 chr3 144620412 144620434 -14979349 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 1 1688 3952 58 21 0 chr3 144621447 144621912 -14977871 + MT2C_Mm LTR ERVL 1 475 0 1 1688 604 279 118 59 chr3 144622482 144622890 -14976893 - L1MA8 LINE L1 -22 6269 5838 1 1688 311 78 20 0 chr3 144623399 144623450 -14976333 + (CAAAC)n Simple_repeat Simple_repeat 2 53 0 1 1688 246 175 18 0 chr3 144624213 144624270 -14975513 + (TA)n Simple_repeat Simple_repeat 1 58 0 1 1688 3491 184 47 63 chr3 144625402 144626271 -14973512 + RLTR13A LTR ERVK 1 855 0 1 1688 415 250 42 0 chr3 144626309 144626405 -14973378 - ID_B1 SINE B4 -11 213 114 1 1688 23 0 0 0 chr3 144627474 144627497 -14972286 + AT_rich Low_complexity Low_complexity 1 23 0 1 1688 591 342 0 0 chr3 144627539 144627688 -14972095 - RSINE1 SINE B4 -15 150 2 1 1688 216 0 0 0 chr3 144627738 144627762 -14972021 + (TG)n Simple_repeat Simple_repeat 2 25 0 1 1688 245 327 0 0 chr3 144627766 144627821 -14971962 - RSINE1 SINE B4 -23 142 88 1 1688 309 202 186 23 chr3 144628503 144628589 -14971194 - PB1D10 SINE Alu -1 116 17 1 1688 1609 278 57 20 chr3 144629485 144630043 -14969740 - Lx9 LINE L1 -707 6937 6359 1 1688 225 65 0 0 chr3 144630050 144630081 -14969702 + (TG)n Simple_repeat Simple_repeat 2 32 0 1 1688 1097 304 119 26 chr3 144630198 144630742 -14969041 + Lx9 LINE L1 6945 7539 -105 1 1688 24 53 0 0 chr3 144630797 144630835 -14968948 + AT_rich Low_complexity Low_complexity 1 38 0 1 1688 203 274 65 0 chr3 144630972 144631034 -14968749 - MIR SINE MIR -19 243 178 1 1688 612 197 40 16 chr3 144632446 144632570 -14967213 + RSINE1 SINE B4 4 130 -35 1 1688 426 136 42 8 chr3 144632579 144632698 -14967085 + GA-rich Low_complexity Low_complexity 2 124 0 1 1688 287 262 44 82 chr3 144632895 144633053 -14966730 + MER106A DNA MER1_type 84 235 -1 1 1688 191 36 0 35 chr3 144634481 144634510 -14965273 + (TAAAA)n Simple_repeat Simple_repeat 3 30 0 1 1688 1831 206 108 59 chr3 144634973 144635438 -14964345 + RLTR31A_Mm LTR ERVK 1 494 -90 1 1688 276 77 0 0 chr3 144635438 144635477 -14964306 + (TGG)n Simple_repeat Simple_repeat 2 40 0 1 1688 1831 206 108 59 chr3 144635477 144635549 -14964234 + RLTR31A_Mm LTR ERVK 495 565 -19 1 1688 261 0 0 0 chr3 144635549 144635578 -14964205 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1 1688 1831 206 108 59 chr3 144635578 144635596 -14964187 + RLTR31A_Mm LTR ERVK 566 583 -1 1 1688 272 293 0 0 chr3 144635599 144635657 -14964126 + MER91B DNA Tip100 2 59 -131 1 1688 195 42 0 0 chr3 144636077 144636101 -14963682 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1 1688 3354 79 2 29 chr3 144638716 144639158 -14960625 - L1_Mus2 LINE L1 -2 6564 6135 1 1688 1031 303 92 9 chr3 144639275 144639721 -14960062 - Lx8 LINE L1 -238 7235 6753 1 1688 1223 126 32 0 chr3 144639937 144640127 -14959656 + Lx2 LINE L1 6177 6372 -625 1 1688 923 214 102 0 chr3 144640480 144640676 -14959107 - B3 SINE B2 0 216 1 1 1688 229 246 40 80 chr3 144641874 144641949 -14957834 + LTR16E2 LTR ERVL 504 568 0 1 1688 342 298 71 16 chr3 144641972 144642098 -14957685 - MIRb SINE MIR -15 253 121 1 1688 3595 129 171 3 chr3 144642176 144642936 -14956847 + RMER12 LTR ERVK 1 888 -434 1 1688 426 69 0 0 chr3 144642936 144642994 -14956789 + (TG)n Simple_repeat Simple_repeat 2 59 0 1 1688 384 294 28 92 chr3 144642994 144643115 -14956668 + RLTR21 LTR ERVK 1287 1381 -191 1 1688 548 181 9 62 chr3 144643127 144643239 -14956544 + RMER12 LTR ERVK 1217 1322 0 1 1688 210 342 109 66 chr3 144643511 144643768 -14956015 - L2c LINE L2 -19 3368 3101 1 1688 208 362 69 0 chr3 144644671 144644787 -14954996 + MIR SINE MIR 48 171 -91 1 1688 764 286 147 81 chr3 144644879 144645470 -14954313 + L1MCa LINE L1 231 860 -5648 1 1688 704 271 225 3 chr3 144645631 144645942 -14953841 - Lx7 LINE L1 -279 7417 7038 1 1688 585 0 0 0 chr3 144646266 144646331 -14953452 + (GGAAA)n Simple_repeat Simple_repeat 3 67 0 1 1688 242 352 14 0 chr3 144646331 144646402 -14953381 + G-rich Low_complexity Low_complexity 2 73 0 1 1688 690 154 14 14 chr3 144646402 144646547 -14953236 + A-rich Low_complexity Low_complexity 1 145 0 1 1688 4029 262 89 17 chr3 144646573 144647800 -14951983 - Lx7 LINE L1 -501 7195 5881 1 1688 1511 208 3 7 chr3 144647801 144648096 -14951687 - L1_Mur3 LINE L1 -724 5156 4863 1 1688 537 250 215 20 chr3 144648083 144648381 -14951402 + L1MCa LINE L1 881 1236 -5272 1 1688 761 282 143 8 chr3 144648359 144648723 -14951060 + L1MC1 LINE L1 5895 6307 -26 2 1688 1671 184 50 84 chr3 144648935 144649441 -14950342 + RLTR41 LTR ERV1 1 526 -6 2 1688 410 254 25 50 chr3 144649607 144649727 -14950056 + MER5A1 DNA MER1_type 10 126 -40 2 1688 951 208 10 0 chr3 144649763 144649960 -14949823 - Lx5 LINE L1 -11 7039 6841 2 1688 2286 174 64 59 chr3 144649961 144650506 -14949277 - Lx5 LINE L1 -480 6570 6023 2 1688 4265 146 29 7 chr3 144650512 144651447 -14948336 - Lx5 LINE L1 -902 6148 5190 2 1688 266 149 30 0 chr3 144652505 144652572 -14947211 + (TCTCTG)n Simple_repeat Simple_repeat 3 71 0 2 1688 355 177 0 31 chr3 144652940 144653004 -14946779 + B4 SINE B4 13 74 -218 2 1688 530 197 7 0 chr3 144653012 144653149 -14946634 + GA-rich Low_complexity Low_complexity 1 138 0 2 1688 308 247 81 20 chr3 144653149 144653248 -14946535 + B4 SINE B4 125 229 -63 2 1688 456 19 0 0 chr3 144653356 144653409 -14946374 + (TAGA)n Simple_repeat Simple_repeat 2 54 0 2 1688 897 272 208 35 chr3 144653426 144654017 -14945766 + L1MB3 LINE L1 5478 6170 -13 2 1688 204 40 0 0 chr3 144654068 144654093 -14945690 + (T)n Simple_repeat Simple_repeat 1 25 0 2 1688 1309 27 0 7 chr3 144654093 144654241 -14945542 - B1_Mm SINE Alu 0 147 1 2 1688 417 284 46 71 chr3 144654516 144654713 -14945070 + ORR1E LTR MaLR 1 192 -167 2 1688 2431 33 0 4 chr3 144655292 144655567 -14944216 + L1Md_A LINE L1 6309 6582 0 2 1688 360 270 77 17 chr3 144657444 144657561 -14942222 + MER5A1 DNA MER1_type 38 161 -5 2 1688 813 229 0 0 chr3 144657741 144657885 -14941898 - B1_Mur2 SINE Alu -1 148 5 2 1688 21 0 0 0 chr3 144660273 144660294 -14939489 + AT_rich Low_complexity Low_complexity 1 21 0 2 1688 266 344 94 41 chr3 144660431 144660601 -14939182 + MIRb SINE MIR 67 245 -23 2 1688 345 264 44 0 chr3 144661080 144661171 -14938612 + MER45B DNA Tip100 46 140 -900 2 1688 212 263 26 13 chr3 144661225 144661302 -14938481 + (TG)n Simple_repeat Simple_repeat 1 78 0 2 1688 935 298 93 10 chr3 144661302 144661688 -14938095 + MER45B DNA Tip100 194 611 -429 2 1688 238 320 18 80 chr3 144661702 144661814 -14937969 + MTEa LTR MaLR 4 108 -271 2 1688 508 251 77 16 chr3 144662191 144662373 -14937410 + Lx8 LINE L1 7279 7471 -2 2 1688 279 314 119 37 chr3 144662409 144662518 -14937265 + PB1D7 SINE Alu 1 118 -2 2 1688 225 0 0 0 chr3 144663223 144663248 -14936535 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 2 1688 213 119 0 0 chr3 144663457 144663499 -14936284 + (T)n Simple_repeat Simple_repeat 1 42 0 2 1688 216 111 0 0 chr3 144663700 144663736 -14936047 + (CAT)n Simple_repeat Simple_repeat 3 38 0 2 1688 231 61 0 0 chr3 144665328 144665361 -14934422 + (TTTTTA)n Simple_repeat Simple_repeat 2 34 0 2 1688 1898 187 112 46 chr3 144665693 144666085 -14933698 + MTC LTR MaLR 1 418 -3 2 1688 1950 106 8 0 chr3 144666085 144666350 -14933433 + Lx LINE L1 6386 6652 -2 2 1688 207 0 0 0 chr3 144666364 144666387 -14933396 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 2 1688 830 235 73 0 chr3 144666871 144667050 -14932733 + ORR1D1 LTR MaLR 1 192 -182 2 1688 23 0 0 0 chr3 144668052 144668075 -14931708 + AT_rich Low_complexity Low_complexity 1 23 0 2 1688 201 74 0 0 chr3 144668613 144668640 -14931143 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2 1688 240 35 0 0 chr3 144669301 144669330 -14930453 + (CAAAA)n Simple_repeat Simple_repeat 3 31 0 2 1688 730 212 0 0 chr3 144669401 144669538 -14930245 - RSINE1 SINE B4 -26 139 3 2 1688 393 248 40 0 chr3 144669806 144669907 -14929876 - PB1D9 SINE Alu -5 115 11 2 1688 313 359 39 10 chr3 144670416 144670624 -14929159 + MER20 DNA MER1_type 4 217 -2 2 1688 245 340 35 48 chr3 144673108 144673253 -14926530 + L2b LINE L2 3045 3187 -188 2 1688 487 277 24 36 chr3 144674019 144674184 -14925599 + Lx6 LINE L1 7208 7370 -90 2 1688 324 190 0 0 chr3 144674948 144675027 -14924756 + (TA)n Simple_repeat Simple_repeat 1 79 0 2 1688 2281 107 22 0 chr3 144675344 144675663 -14924120 + ORR1A3 LTR MaLR 1 326 0 2 1688 492 271 27 27 chr3 144675733 144675881 -14923902 - RSINE1 SINE B4 -8 157 10 2 1688 469 342 108 69 chr3 144675971 144676332 -14923451 + LTR16A1 LTR ERVL 72 446 -10 2 1688 402 169 0 0 chr3 144677478 144677567 -14922216 + (CA)n Simple_repeat Simple_repeat 2 90 0 2 1688 356 233 57 19 chr3 144677577 144677682 -14922101 - ID_B1 SINE B4 -2 222 114 2 1688 645 14 0 0 chr3 144679232 144679306 -14920477 + (TG)n Simple_repeat Simple_repeat 2 75 0 2 1688 570 196 182 0 chr3 144679321 144679464 -14920319 - B4 SINE B4 -122 170 2 2 1688 700 283 102 12 chr3 144680658 144680912 -14918871 - B4A SINE B4 -9 283 7 2 1688 186 43 0 0 chr3 144683250 144683273 -14916510 + (TTTTG)n Simple_repeat Simple_repeat 4 26 0 2 1688 608 178 19 0 chr3 144683274 144683381 -14916402 - PB1D10 SINE Alu 0 117 9 2 1688 3166 69 2 31 chr3 144683573 144683992 -14915791 + MTB_Mm LTR MaLR 1 407 0 2 1688 5963 146 99 21 chr3 144683992 144685157 -14914626 + MTB_Mm-int LTR MaLR 2 1258 0 2 1688 821 46 0 0 chr3 144685157 144685266 -14914517 + MTB_Mm LTR MaLR 1 109 -298 2 1688 3472 154 1 5 chr3 144685268 144685856 -14913927 - MERVL-int LTR ERVL -4748 737 176 2 1688 1427 74 15 0 chr3 144685858 144686061 -14913722 + MT2B2 LTR ERVL 379 584 0 2 1688 319 320 68 0 chr3 144688162 144688265 -14911518 + PB1 SINE Alu 11 120 -7 2 1688 2037 28 16 19 chr3 144688526 144688784 -14910999 - L1Md_F3 LINE L1 -1 6583 6327 2 1688 270 234 117 0 chr3 144689417 144689494 -14910289 - PB1D7 SINE Alu -17 103 18 2 1688 351 0 0 0 chr3 144689495 144689534 -14910249 + (CCA)n Simple_repeat Simple_repeat 2 40 0 2 1688 968 128 6 16 chr3 144689555 144689737 -14910046 + GA-rich Low_complexity Low_complexity 1 180 0 2 1688 658 181 0 16 chr3 144690516 144690778 -14909005 + (CCAA)n Simple_repeat Simple_repeat 1 257 0 2 1688 26 0 0 0 chr3 144692373 144692399 -14907384 + AT_rich Low_complexity Low_complexity 1 26 0 2 1688 367 181 34 34 chr3 144692941 144693118 -14906665 + (CAGAGA)n Simple_repeat Simple_repeat 4 180 0 2 1688 207 146 0 0 chr3 144694143 144694184 -14905599 + (GA)n Simple_repeat Simple_repeat 1 41 0 2 1688 405 0 0 0 chr3 144694355 144694400 -14905383 + (TG)n Simple_repeat Simple_repeat 1 45 0 2 1688 456 19 0 0 chr3 144695768 144695821 -14903962 + (CA)n Simple_repeat Simple_repeat 2 54 0 2 1688 399 306 17 96 chr3 144696823 144696986 -14902797 + RSINE1 SINE B4 3 152 -13 2 1688 519 17 0 0 chr3 144696986 144697046 -14902737 + (TC)n Simple_repeat Simple_repeat 1 60 0 2 1688 399 306 17 96 chr3 144697046 144697059 -14902724 + RSINE1 SINE B4 153 165 0 2 1688 318 87 0 0 chr3 144697712 144697758 -14902025 + (TG)n Simple_repeat Simple_repeat 2 47 0 2 1688 495 0 0 0 chr3 144698081 144698136 -14901647 + (TA)n Simple_repeat Simple_repeat 2 56 0 2 1688 273 119 0 0 chr3 144698370 144698412 -14901371 + (TATG)n Simple_repeat Simple_repeat 1 42 0 2 1688 8246 135 31 68 chr3 144698491 144700124 -14899659 + RLTR21 LTR ERVK 1 1572 0 2 1688 330 285 16 8 chr3 144701054 144701178 -14898605 + SRV_MM-int LTR ERVK 3482 3606 -2561 2 26 38964 39 0 3 chr3 144703192 144709425 -14890358 - L1Md_T LINE L1 -2 6583 271 2 1689 8166 136 46 52 chr3 144709553 144710864 -14888919 + RLTR21 LTR ERVK 1 1287 -285 2 1689 411 73 0 0 chr3 144710864 144710919 -14888864 + (TG)n Simple_repeat Simple_repeat 1 55 0 2 1689 8166 136 46 52 chr3 144710919 144711188 -14888595 + RLTR21 LTR ERVK 1288 1571 -1 2 1689 1056 78 15 8 chr3 144712303 144712565 -14887218 + (TCTCTG)n Simple_repeat Simple_repeat 1 264 0 2 1689 1182 78 0 0 chr3 144712583 144712763 -14887020 + (TCTCTG)n Simple_repeat Simple_repeat 1 180 0 2 1689 436 331 145 18 chr3 144712835 144713151 -14886632 + MER31A LTR ERV1 70 425 -60 2 1689 531 260 63 0 chr3 144713552 144713679 -14886104 + B1F SINE Alu 1 135 -14 2 1689 295 321 98 31 chr3 144713701 144713955 -14885828 - L1M5 LINE L1 -2197 3949 3679 2 1689 390 288 57 5 chr3 144714125 144714317 -14885466 - L1M5 LINE L1 -3193 2953 2752 2 1689 585 301 49 94 chr3 144714360 144714646 -14885137 - B4A SINE B4 0 292 20 2 1689 282 226 16 16 chr3 144714694 144714757 -14885026 - L1M5 LINE L1 -3419 2727 2665 2 1689 288 0 0 0 chr3 144714757 144714789 -14884994 + (TA)n Simple_repeat Simple_repeat 2 33 0 2 1689 196 91 22 22 chr3 144714855 144714900 -14884883 + (TTTG)n Simple_repeat Simple_repeat 1 45 0 2 1689 1224 55 0 0 chr3 144714900 144715046 -14884737 - B1_Mus1 SINE Alu -1 147 2 2 1689 405 0 0 0 chr3 144715257 144715302 -14884481 + (TA)n Simple_repeat Simple_repeat 1 45 0 2 1689 1171 61 0 0 chr3 144715520 144715667 -14884116 + B1_Mus2 SINE Alu 1 147 0 2 1689 198 103 0 0 chr3 144715667 144715696 -14884087 + (GAAA)n Simple_repeat Simple_repeat 4 32 0 2 1689 1068 88 0 13 chr3 144715746 144715895 -14883888 + B1_Mus2 SINE Alu 1 147 0 2 1689 4642 64 17 0 chr3 144716057 144716634 -14883149 - LTRIS_Mus LTR ERV1 0 587 1 2 1689 423 207 0 11 chr3 144717664 144717752 -14882031 + RLTR19-int LTR ERVK 889 975 -5162 2 1689 1536 190 21 59 chr3 144717892 144718266 -14881517 + RLTR19-int LTR ERVK 987 1346 -4791 2 1689 207 100 0 0 chr3 144718284 144718314 -14881469 + (T)n Simple_repeat Simple_repeat 1 30 0 2 1689 35812 23 1 7 chr3 144718500 144724729 -14875054 - L1Md_T LINE L1 0 6582 440 2 1689 4754 172 24 54 chr3 144724882 144725900 -14873883 + RLTR19-int LTR ERVK 2183 3169 -2968 2 1689 1093 279 60 106 chr3 144725991 144726740 -14873043 - L1M2 LINE L1 -2003 4140 3426 2 1689 591 15 0 0 chr3 144726762 144726830 -14872953 + (TTCC)n Simple_repeat Simple_repeat 3 70 0 2 1689 882 97 17 12 chr3 144727030 144727273 -14872510 + (TCTA)n Simple_repeat Simple_repeat 1 244 0 2 1689 8233 212 67 21 chr3 144727273 144729044 -14870739 - Lx6 LINE L1 -5 7455 5602 2 1689 2786 154 86 28 chr3 144729044 144729580 -14870203 + RMER2 LTR ERV1 1 567 0 2 1689 8233 164 30 14 chr3 144729580 144730407 -14869376 - Lx6 LINE L1 -1859 5601 4749 2 1689 3385 76 10 4 chr3 144730430 144730917 -14868866 - RLTR1C LTR ERV1 -13 490 1 2 1689 1202 191 7 101 chr3 144730917 144731043 -14868740 - Lx6 LINE L1 -1158 4722 4625 2 1689 215 31 0 30 chr3 144731043 144731076 -14868707 + (TG)n Simple_repeat Simple_repeat 2 33 0 2 1689 1202 196 9 102 chr3 144731076 144731254 -14868529 - Lx6 LINE L1 -1488 4658 4454 2 1689 1384 81 37 11 chr3 144731254 144731442 -14868341 - B2_Mm2 SINE B2 -2 193 1 2 1689 278 297 52 129 chr3 144731442 144731469 -14868314 - Lx6 LINE L1 -1662 4484 4452 2 1689 207 0 0 0 chr3 144731469 144731492 -14868291 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2 1689 26 0 0 0 chr3 144733106 144733132 -14866651 + AT_rich Low_complexity Low_complexity 1 26 0 2 1689 22 35 0 0 chr3 144733282 144733311 -14866472 + AT_rich Low_complexity Low_complexity 1 29 0 3 1689 263 250 12 73 chr3 144735793 144735875 -14863908 + ID4_ SINE ID 3 79 -4 3 1689 252 301 27 0 chr3 144736210 144736283 -14863500 + RSINE1 SINE B4 81 155 -10 3 1689 21 0 0 0 chr3 144736450 144736471 -14863312 + AT_rich Low_complexity Low_complexity 1 21 0 3 1689 4162 100 187 29 chr3 144736499 144737263 -14862520 + RMER17D LTR ERVK 1 885 -4 3 1689 505 300 59 14 chr3 144737324 144737544 -14862239 - MIR SINE MIR -1 261 32 3 1689 210 74 35 69 chr3 144737634 144737692 -14862091 + (CAAA)n Simple_repeat Simple_repeat 1 56 0 3 1689 22 0 0 0 chr3 144738107 144738129 -14861654 + AT_rich Low_complexity Low_complexity 1 22 0 3 1689 647 84 11 0 chr3 144738389 144738484 -14861299 + (TC)n Simple_repeat Simple_repeat 2 97 0 3 1689 1458 248 73 79 chr3 144738853 144739361 -14860422 + RLTR18B LTR ERVK 1 505 -7 3 1689 435 244 15 68 chr3 144742372 144742504 -14857279 + PB1 SINE Alu 3 127 0 3 1689 5192 81 3 11 chr3 144742722 144743422 -14856361 - L1_Mus3 LINE L1 -4 6634 5941 3 1689 246 283 90 45 chr3 144744569 144744680 -14855103 - PB1D10 SINE Alu -1 116 1 3 1689 269 235 10 165 chr3 144744702 144744799 -14854984 - ID4_ SINE ID -1 82 1 3 1689 526 288 22 17 chr3 144745091 144745302 -14854481 - L1M2 LINE L1 -656 5506 5295 3 1689 742 235 0 0 chr3 144745302 144745451 -14854332 - B1_Mur3 SINE Alu 0 149 1 3 1689 551 305 67 48 chr3 144745453 144745928 -14853855 - L1M2 LINE L1 -817 5326 4843 3 1689 397 303 0 0 chr3 144745928 144746017 -14853766 + B1F2 SINE Alu 1 89 -60 3 1689 235 374 22 0 chr3 144746500 144746591 -14853192 + B1F SINE Alu 1 93 -56 3 1689 243 173 0 0 chr3 144746762 144746814 -14852969 + (CCCTA)n Simple_repeat Simple_repeat 3 54 0 3 1689 310 302 16 23 chr3 144748312 144748441 -14851342 + MER5B DNA MER1_type 1 128 -50 3 1689 207 69 0 0 chr3 144748453 144748482 -14851301 + (TTTG)n Simple_repeat Simple_repeat 3 31 0 3 1689 297 250 0 14 chr3 144748495 144748564 -14851219 - ID4_ SINE ID -10 73 6 3 1689 360 0 0 0 chr3 144750440 144750480 -14849303 + (TG)n Simple_repeat Simple_repeat 2 41 0 3 1689 1686 179 13 3 chr3 144752902 144753210 -14846573 + RMER12 LTR ERVK 1 311 -1011 3 1689 209 157 0 41 chr3 144753211 144753284 -14846499 + T-rich Low_complexity Low_complexity 1 70 0 3 1689 1156 88 0 0 chr3 144753284 144753432 -14846351 - B1_Mus1 SINE Alu 0 148 1 3 1689 262 123 88 0 chr3 144753435 144753492 -14846291 + RMER12 LTR ERVK 304 365 -957 3 1689 250 279 0 23 chr3 144754417 144754505 -14845278 + L1MC LINE L1 5751 5836 -2046 3 1689 586 295 0 51 chr3 144754810 144754967 -14844816 - B1F2 SINE Alu 0 149 1 3 1689 3353 170 91 1 chr3 144756134 144756341 -14843442 - RLTR25A LTR ERVK 0 1103 846 3 1689 470 17 17 0 chr3 144756341 144756400 -14843383 + (TAA)n Simple_repeat Simple_repeat 2 61 0 3 1689 3353 170 91 1 chr3 144756400 144756871 -14842912 - RLTR25A LTR ERVK -258 845 364 3 1689 395 146 158 0 chr3 144756877 144756959 -14842824 - RLTR25A LTR ERVK -1007 96 2 3 1689 21 57 0 0 chr3 144757014 144757049 -14842734 + AT_rich Low_complexity Low_complexity 1 35 0 3 1689 570 259 36 15 chr3 144758952 144759089 -14840694 + B1F1 SINE Alu 1 140 -9 3 1689 1466 245 39 6 chr3 144762898 144763255 -14836528 + ORR1D2 LTR MaLR 1 369 -1 3 1689 302 321 112 82 chr3 144763865 144764170 -14835613 - ORR1D1 LTR MaLR -5 369 56 3 1689 197 191 250 0 chr3 144765075 144765143 -14834640 + L2a LINE L2 3342 3426 0 3 1689 450 88 0 0 chr3 144768252 144768320 -14831463 + (TG)n Simple_repeat Simple_repeat 2 69 0 3 1689 525 223 33 0 chr3 144768321 144768442 -14831341 - RSINE1 SINE B4 -40 125 1 3 1689 207 0 0 0 chr3 144768748 144768771 -14831012 + (CA)n Simple_repeat Simple_repeat 2 24 0 3 1689 350 69 17 0 chr3 144769146 144769204 -14830579 + (TGGGGG)n Simple_repeat Simple_repeat 2 60 0 3 1689 472 272 79 129 chr3 144769893 144769967 -14829816 - L1MA7 LINE L1 -279 6021 5939 3 1689 183 42 0 0 chr3 144769967 144769991 -14829792 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 3 1689 488 248 91 62 chr3 144769991 144770258 -14829525 - L1MA7 LINE L1 -362 5938 5697 3 1689 1020 273 135 5 chr3 144770308 144770753 -14829030 - L1MA7 LINE L1 -1272 4871 4369 3 1689 318 26 0 0 chr3 144770888 144770927 -14828856 + (CA)n Simple_repeat Simple_repeat 2 40 0 3 1689 224 344 0 0 chr3 144770983 144771047 -14828736 - PB1D10 SINE Alu -48 69 6 3 1689 2763 158 52 22 chr3 144771143 144771641 -14828142 - RMER1B Other Other 0 1066 554 3 1689 1298 64 16 21 chr3 144771795 144771987 -14827796 - LTRIS2 LTR ERV1 0 564 374 3 1689 3403 3 0 0 chr3 144771987 144772354 -14827429 + IAPLTR1_Mm LTR ERVK 1 367 0 3 1689 27679 28 33 3 chr3 144772354 144775558 -14824225 + IAPEz-int LTR ERVK 8 3306 -3175 3 1689 832 11 0 0 chr3 144775548 144775639 -14824144 + IAPEz-int LTR ERVK 4666 4756 -1725 3 1689 10325 22 3 0 chr3 144775639 144776792 -14822991 + IAPEz-int LTR ERVK 5326 6481 0 3 1689 3403 3 0 0 chr3 144776792 144777159 -14822624 + IAPLTR1_Mm LTR ERVK 1 367 0 3 1689 2436 39 116 0 chr3 144777159 144777495 -14822288 - LTRIS2 LTR ERV1 -185 379 5 3 1689 436 121 15 91 chr3 144777498 144777595 -14822188 - RMER1B Other Other -624 442 299 3 1689 207 0 0 0 chr3 144778652 144778675 -14821108 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 3 1689 327 206 0 0 chr3 144779769 144779832 -14819951 - RCHARR1 DNA MER1_type -546 428 366 3 1689 758 310 62 36 chr3 144779922 144780230 -14819553 + MLT1A0 LTR MaLR 49 364 -1 3 1689 383 307 77 24 chr3 144780341 144780511 -14819272 - L1ME2z LINE L1 -613 5831 5653 3 1689 187 31 62 0 chr3 144781007 144781039 -14818744 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 3 1689 1441 222 78 171 chr3 144782844 144783463 -14816320 - MTC-int LTR MaLR -456 802 242 3 1689 847 269 72 109 chr3 144784468 144784844 -14814939 - MTE2a LTR MaLR -2 377 16 3 1689 249 83 0 0 chr3 144784959 144784995 -14814788 + (TG)n Simple_repeat Simple_repeat 2 37 0 3 1689 223 265 167 0 chr3 144785274 144785376 -14814407 - L2c LINE L2 -44 3343 3225 3 1689 467 233 80 170 chr3 144786407 144786451 -14813332 + B3A SINE B2 1 40 -158 3 1689 1256 42 0 14 chr3 144786451 144786596 -14813187 + B1_Mm SINE Alu 3 145 -2 3 1689 467 233 80 170 chr3 144786596 144786763 -14813020 + B3A SINE B2 41 193 -5 3 1689 823 217 7 0 chr3 144786910 144787048 -14812735 - B1_Mur1 SINE Alu -6 143 5 3 1689 225 275 28 28 chr3 144787125 144787196 -14812587 + MER67D LTR ERV1 188 258 -256 3 1689 194 0 0 37 chr3 144787623 144787650 -14812133 + (TTA)n Simple_repeat Simple_repeat 2 27 0 3 1689 1362 84 0 68 chr3 144787891 144788096 -14811687 + B2_Mm2 SINE B2 1 191 -4 3 1689 530 236 107 7 chr3 144788244 144788393 -14811390 - RSINE1 SINE B4 0 165 2 3 1689 36 23 0 0 chr3 144788537 144788580 -14811203 + AT_rich Low_complexity Low_complexity 1 43 0 3 1689 1026 186 77 0 chr3 144788588 144788782 -14811001 - B3 SINE B2 -6 210 2 3 1689 488 209 57 0 chr3 144789519 144789624 -14810159 + B3 SINE B2 106 216 0 3 1689 258 319 0 0 chr3 144790446 144790515 -14809268 + ID4_ SINE ID 2 70 -13 3 1689 273 221 115 23 chr3 144790560 144790690 -14809093 + L1M2 LINE L1 5089 5230 -913 3 1689 489 264 30 37 chr3 144791349 144791483 -14808300 + B4 SINE B4 104 236 -56 3 1689 226 225 56 0 chr3 144792294 144792365 -14807418 - L1ME4a LINE L1 -114 6010 5936 3 1689 208 319 0 14 chr3 144792884 144792957 -14806826 + C-rich Low_complexity Low_complexity 3 74 0 3 1689 201 171 0 0 chr3 144793356 144793391 -14806392 + T-rich Low_complexity Low_complexity 1 35 0 3 1689 838 158 251 11 chr3 144793829 144794008 -14805775 + URR1A DNA MER1_type 5 226 0 3 1689 276 240 142 19 chr3 144794212 144794318 -14805465 - Lx8 LINE L1 -9 7464 7346 3 1689 257 274 16 0 chr3 144796238 144796300 -14803483 - MER103 DNA DNA -41 125 63 3 1689 275 282 128 8 chr3 144796961 144797086 -14802697 + MIRc SINE MIR 67 206 -62 3 1689 248 320 26 0 chr3 144797986 144798064 -14801719 - L2a LINE L2 -18 3408 3329 3 1689 255 365 32 70 chr3 144799198 144799354 -14800429 + RMER12 LTR ERVK 727 876 -446 3 1689 312 27 0 0 chr3 144799694 144799731 -14800052 + (TG)n Simple_repeat Simple_repeat 1 37 0 3 1689 594 0 0 0 chr3 144801340 144801406 -14798377 + (TC)n Simple_repeat Simple_repeat 1 66 0 3 1689 507 244 36 56 chr3 144801412 144801590 -14798193 - MTD LTR MaLR -218 201 9 3 1689 447 239 78 11 chr3 144801687 144801852 -14797931 + LTR40b LTR ERVL 255 472 -47 3 1689 23 33 0 0 chr3 144801947 144801977 -14797806 + AT_rich Low_complexity Low_complexity 1 30 0 3 1689 298 312 25 59 chr3 144802273 144802392 -14797391 - B1F SINE Alu -34 115 1 3 1689 768 272 64 38 chr3 144803280 144803547 -14796236 + B4A SINE B4 15 288 -4 3 1689 4001 30 0 0 chr3 144803755 144804218 -14795565 - L1Md_F3 LINE L1 -219 6365 5903 3 1689 1813 28 0 5 chr3 144804218 144804432 -14795351 + L1Md_F3 LINE L1 6372 6584 0 3 1689 287 273 0 0 chr3 144804448 144804514 -14795269 + tRNA-Ala-GCA tRNA tRNA 1 66 -9 3 1689 1139 62 0 93 chr3 144804890 144805051 -14794732 + B1_Mm SINE Alu 2 147 0 3 1689 6657 223 51 22 chr3 144805092 144805657 -14794126 - Lx6 LINE L1 -309 7151 6581 3 1689 994 170 160 0 chr3 144805657 144805851 -14793932 - URR1B DNA MER1_type 0 225 1 3 1689 6657 213 54 16 chr3 144805851 144806975 -14792808 - Lx6 LINE L1 -880 6580 5412 3 1689 413 254 54 0 chr3 144807713 144807843 -14791940 - L1MD LINE L1 -850 5509 5373 3 1689 2395 87 28 87 chr3 144807848 144808240 -14791543 - Lx LINE L1 0 6654 6286 3 1689 321 26 0 0 chr3 144808291 144808329 -14791454 + (TC)n Simple_repeat Simple_repeat 2 39 0 3 1689 261 0 0 0 chr3 144808329 144808357 -14791426 + (TA)n Simple_repeat Simple_repeat 2 30 0 3 1689 288 0 0 0 chr3 144808917 144808949 -14790834 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 3 1689 21 36 0 0 chr3 144809408 144809436 -14790347 + GC_rich Low_complexity Low_complexity 1 28 0 3 1689 877 179 179 0 chr3 144810565 144810744 -14789039 - B3 SINE B2 -4 212 2 3 1689 588 230 247 0 chr3 144811020 144811198 -14788585 - ID_B1 SINE B4 -2 222 1 3 1689 620 204 13 13 chr3 144811638 144811869 -14787914 + (TATG)n Simple_repeat Simple_repeat 1 231 0 3 1689 447 19 0 0 chr3 144812296 144812348 -14787435 + (TG)n Simple_repeat Simple_repeat 1 52 0 3 1689 228 303 106 3 chr3 144812714 144812849 -14786934 + MIRb SINE MIR 21 162 -106 3 1689 185 328 76 76 chr3 144812878 144813023 -14786760 + L2 LINE L2 2364 2508 -911 4 1689 348 263 26 0 chr3 144813692 144813768 -14786015 - ID4_ SINE ID -4 79 2 4 1689 1126 59 7 0 chr3 144815656 144815792 -14783991 + B1_Mus2 SINE Alu 1 137 -10 4 1689 441 0 0 0 chr3 144815792 144815841 -14783942 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 4 1689 35 24 0 0 chr3 144816638 144816680 -14783103 + AT_rich Low_complexity Low_complexity 1 42 0 4 1689 1995 204 111 19 chr3 144817283 144817394 -14782389 - Lx9 LINE L1 -2 7642 7520 4 1689 408 71 0 0 chr3 144817394 144817450 -14782333 + (TG)n Simple_repeat Simple_repeat 1 56 0 4 1689 1995 204 111 19 chr3 144817450 144817863 -14781920 - Lx9 LINE L1 -125 7519 7070 4 1689 1110 173 74 18 chr3 144817863 144818092 -14781691 + Lx9 LINE L1 6836 7077 -567 4 1689 216 190 0 6 chr3 144818302 144818347 -14781436 + PB1 SINE Alu 28 71 -46 4 1689 245 146 21 0 chr3 144818349 144818397 -14781386 + GA-rich Low_complexity Low_complexity 4 52 0 4 1689 334 247 55 0 chr3 144818397 144818470 -14781313 + ID4_ SINE ID 3 79 -4 4 1689 281 316 32 0 chr3 144818551 144818646 -14781137 - PB1D10 SINE Alu -19 98 1 4 1689 22 35 0 0 chr3 144820406 144820435 -14779348 + AT_rich Low_complexity Low_complexity 1 29 0 4 1689 2122 177 31 98 chr3 144821836 144822034 -14777749 + MTC LTR MaLR 1 196 -225 4 1689 896 106 20 60 chr3 144822034 144822185 -14777598 + B1_Mur3 SINE Alu 5 149 0 4 1689 2122 177 31 98 chr3 144822185 144822437 -14777346 + MTC LTR MaLR 197 421 0 4 1689 659 212 166 16 chr3 144823113 144823300 -14776483 - RMER15 LTR ERVL -53 522 308 4 1689 304 242 43 92 chr3 144823329 144823470 -14776313 - RMER15 LTR ERVL -416 159 26 4 1689 242 158 34 34 chr3 144823484 144823543 -14776240 - RMER15 LTR ERVL -515 60 2 4 1689 270 275 0 14 chr3 144823544 144823614 -14776169 + C-rich Low_complexity Low_complexity 5 73 0 4 1689 833 231 61 10 chr3 144823659 144823856 -14775927 + B3 SINE B2 4 210 -6 4 1689 29 47 0 0 chr3 144823989 144824032 -14775751 + AT_rich Low_complexity Low_complexity 1 43 0 4 1689 352 215 51 0 chr3 144824757 144824836 -14774947 + MTE-int LTR MaLR 1343 1425 -155 4 1689 264 59 0 0 chr3 144824844 144824878 -14774905 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 4 1689 235 222 0 0 chr3 144824879 144824924 -14774859 - ID_B1 SINE B4 -11 213 169 4 1689 254 250 38 15 chr3 144824961 144825102 -14774681 - L1MEg1 LINE L1 -4022 3513 3369 4 1689 400 274 95 56 chr3 144825309 144825541 -14774242 + MLT1B LTR MaLR 31 271 -119 4 1689 1703 256 81 55 chr3 144825595 144826043 -14773740 - Lx7 LINE L1 0 7696 7074 4 1689 1302 64 0 0 chr3 144826043 144826388 -14773395 + (TG)n Simple_repeat Simple_repeat 1 345 0 4 1689 1703 247 95 41 chr3 144826388 144826632 -14773151 - Lx7 LINE L1 -623 7073 6818 4 1689 740 299 88 44 chr3 144827162 144827577 -14772206 - L1MEg1 LINE L1 -5731 721 54 4 1689 25 0 0 0 chr3 144828157 144828182 -14771601 + AT_rich Low_complexity Low_complexity 1 25 0 4 1689 522 0 0 0 chr3 144828466 144828524 -14771259 + (CA)n Simple_repeat Simple_repeat 2 59 0 4 1689 409 256 12 0 chr3 144828752 144828838 -14770945 + B4A SINE B4 5 91 -201 4 1689 385 214 14 0 chr3 144828904 144828974 -14770809 + B4A SINE B4 204 274 -18 4 1689 29 84 0 0 chr3 144829664 144829735 -14770048 + AT_rich Low_complexity Low_complexity 1 71 0 4 1689 456 128 0 0 chr3 144829745 144829823 -14769960 + (TG)n Simple_repeat Simple_repeat 1 78 0 4 1689 517 254 64 96 chr3 144829826 144830013 -14769770 - B3A SINE B2 -17 181 1 4 1689 474 264 31 0 chr3 144830425 144830554 -14769229 - L1MC5 LINE L1 -530 7431 7299 4 1689 310 220 53 44 chr3 144830713 144830827 -14768956 - L1MC5 LINE L1 -801 7241 7127 4 1689 201 74 0 0 chr3 144831250 144831277 -14768506 + (T)n Simple_repeat Simple_repeat 1 27 0 4 1689 573 64 0 0 chr3 144832051 144832129 -14767654 + (TG)n Simple_repeat Simple_repeat 1 78 0 4 1689 299 288 19 9 chr3 144832378 144832483 -14767300 + ID_B1 SINE B4 112 217 -7 4 1689 191 283 0 0 chr3 144832863 144832909 -14766874 - L2b LINE L2 -5 3370 3325 4 1689 609 294 211 47 chr3 144833346 144833814 -14765969 + MLT1F LTR MaLR 1 545 -3 4 1690 550 214 18 18 chr3 144834940 144835054 -14764729 + ORR1E LTR MaLR 1 114 -245 4 1690 21 0 0 0 chr3 144835723 144835744 -14764039 + AT_rich Low_complexity Low_complexity 1 21 0 4 1690 496 273 25 74 chr3 144835763 144835925 -14763858 - RSINE1 SINE B4 0 165 12 4 1690 296 315 50 84 chr3 144836446 144836642 -14763141 - Charlie4a DNA MER1_type -232 276 95 4 1690 621 248 81 15 chr3 144836642 144836839 -14762944 + ID_B1 SINE B4 5 214 -10 4 1690 296 315 50 84 chr3 144836839 144836881 -14762902 - Charlie4a DNA MER1_type -414 94 46 4 1690 944 258 42 87 chr3 144838098 144838408 -14761375 - ORR1E LTR MaLR -7 352 57 4 1690 2413 81 3 3 chr3 144840162 144840484 -14759299 - ORR1A2 LTR MaLR 0 327 6 4 1690 263 239 33 22 chr3 144841995 144842085 -14757698 - Tigger7 DNA MER2_type -111 2380 2290 4 1690 5322 61 33 0 chr3 144842090 144842733 -14757050 - L1_Mus1 LINE L1 0 6567 5904 4 1690 528 119 44 33 chr3 144842735 144842843 -14756940 + L1_Mus1 LINE L1 5815 5925 -657 4 1690 348 331 40 16 chr3 144843080 144843206 -14756577 - MLT1A LTR MaLR -245 129 1 4 1690 279 272 250 40 chr3 144843226 144843402 -14756381 + B3 SINE B2 2 214 -2 4 1690 1059 130 14 0 chr3 144843444 144843590 -14756193 + B1_Mur4 SINE Alu 1 148 -2 4 1690 733 190 21 28 chr3 144843766 144843907 -14755876 + B1_Mur1 SINE Alu 9 148 -1 4 1690 315 0 0 0 chr3 144844210 144844245 -14755538 + (CAAAA)n Simple_repeat Simple_repeat 1 35 0 4 1690 330 255 57 0 chr3 144844373 144844479 -14755304 + L1MEc LINE L1 110 221 -6179 4 1690 441 0 0 0 chr3 144845659 144845708 -14754075 + (TAA)n Simple_repeat Simple_repeat 3 51 0 4 1690 204 163 23 0 chr3 144846279 144846322 -14753461 + T-rich Low_complexity Low_complexity 2 45 0 4 1690 1231 180 28 0 chr3 144847244 144847461 -14752322 - URR1B DNA MER1_type 0 225 3 4 1690 475 208 31 2 chr3 144848226 144848326 -14751457 + B1F SINE Alu 5 107 -41 4 1690 423 328 112 60 chr3 144848634 144849248 -14750535 - L1M5 LINE L1 -1471 4675 4030 4 1690 219 204 0 22 chr3 144849447 144849492 -14750291 - ID4_ SINE ID -3 80 37 4 1690 258 226 16 16 chr3 144850293 144850356 -14749427 + CT-rich Low_complexity Low_complexity 1 63 0 4 1690 3604 28 2 10 chr3 144850394 144850793 -14748990 + MTA_Mm LTR MaLR 1 396 0 4 1690 22 0 0 0 chr3 144850881 144850903 -14748880 + AT_rich Low_complexity Low_complexity 1 22 0 4 1690 16052 54 2 0 chr3 144850903 144853567 -14746216 - L1Md_F2 LINE L1 0 6582 3915 4 1690 2598 92 0 6 chr3 144853825 144854154 -14745629 + ORR1A2 LTR MaLR 1 327 0 4 1690 340 285 190 17 chr3 144854188 144854420 -14745363 - MLT2B4 LTR ERVL -56 500 229 4 1690 381 75 0 0 chr3 144854428 144854481 -14745302 + (GA)n Simple_repeat Simple_repeat 1 53 0 4 1690 396 211 62 35 chr3 144854525 144854638 -14745145 - ERVL-B4-int LTR ERVL -146 5611 5496 4 1690 1424 315 84 25 chr3 144854999 144856365 -14743418 - ERVL-B4-int LTR ERVL -656 5058 3584 4 1690 631 236 35 0 chr3 144858175 144858319 -14741464 - B1F1 SINE Alu 0 149 1 4 1690 196 341 66 29 chr3 144858705 144858841 -14740942 - MIR SINE MIR -50 212 72 4 1690 912 258 60 10 chr3 144859242 144859442 -14740341 + B3 SINE B2 7 216 0 4 1690 1922 167 17 115 chr3 144859627 144860046 -14739737 - ORR1C1 LTR MaLR 0 378 1 4 1690 501 321 52 21 chr3 144860241 144860527 -14739256 - L1ME2 LINE L1 -193 5971 5677 4 1690 200 255 39 0 chr3 144860777 144860879 -14738904 + (TA)n Simple_repeat Simple_repeat 2 107 0 4 1690 22 0 0 0 chr3 144860997 144861019 -14738764 + AT_rich Low_complexity Low_complexity 1 22 0 4 1690 22 0 0 0 chr3 144862302 144862324 -14737459 + AT_rich Low_complexity Low_complexity 1 22 0 4 1690 195 42 0 0 chr3 144863228 144863252 -14736531 + (TCTG)n Simple_repeat Simple_repeat 1 24 0 4 1690 2829 165 69 2 chr3 144864059 144864568 -14735215 - L1_Mur2 LINE L1 -45 5832 5290 4 1690 4352 178 32 7 chr3 144864569 144865282 -14734501 + Lx5 LINE L1 6320 7050 0 4 1690 520 286 118 59 chr3 144865576 144866066 -14733717 - L1ME2 LINE L1 -185 5979 5461 4 1690 279 222 97 0 chr3 144866837 144866909 -14732874 - ID4 SINE ID -3 80 2 4 1690 292 276 13 38 chr3 144867292 144867371 -14732412 - MIRb SINE MIR -82 186 110 4 1690 443 294 124 83 chr3 144868348 144868912 -14730871 - L1MA5 LINE L1 -2 6298 5712 4 1690 472 299 45 76 chr3 144868945 144869209 -14730574 - L1MA5 LINE L1 -715 5585 5330 4 1690 466 325 90 14 chr3 144870040 144870252 -14729531 - MIRb SINE MIR -8 260 33 4 1690 3515 58 44 69 chr3 144870833 144871313 -14728470 - L1_Mus2 LINE L1 -4 6562 6095 4 1690 230 279 75 28 chr3 144874881 144875049 -14724734 + MIR SINE MIR 18 205 -63 4 1690 263 269 0 37 chr3 144875176 144875257 -14724526 - L1MB7 LINE L1 -17 6167 6090 4 1690 287 61 0 39 chr3 144875490 144875541 -14724242 + (CAAAAA)n Simple_repeat Simple_repeat 3 51 0 4 1690 283 330 91 55 chr3 144875594 144875956 -14723827 + L1M4 LINE L1 4039 4413 -1733 4 1690 490 312 42 0 chr3 144875959 144876148 -14723635 - MER2 DNA MER2_type -22 323 127 4 1690 915 256 48 65 chr3 144876558 144876867 -14722916 - Charlie12 DNA MER1_type -377 2496 2193 4 1690 390 42 0 0 chr3 144876867 144876915 -14722868 + (CA)n Simple_repeat Simple_repeat 1 48 0 4 1690 1353 280 87 55 chr3 144876920 144877415 -14722368 - RMER1A Other Other -400 630 120 4 1690 493 256 60 60 chr3 144877441 144877607 -14722176 - Charlie12 DNA MER1_type -1318 1555 1390 4 1690 788 231 38 143 chr3 144877694 144877987 -14721796 + RLTR18B LTR ERVK 247 508 -4 4 1690 189 107 0 0 chr3 144877991 144878019 -14721764 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 4 1690 263 281 67 52 chr3 144878019 144878154 -14721629 - Charlie12 DNA MER1_type -1795 1078 942 4 1690 443 282 29 82 chr3 144878159 144878329 -14721454 + B3A SINE B2 33 193 -5 4 1690 2366 124 64 13 chr3 144878890 144879267 -14720516 + Lx2B LINE L1 6598 6993 -7 4 1690 864 108 0 0 chr3 144879552 144879709 -14720074 + (GA)n Simple_repeat Simple_repeat 2 158 0 4 1690 308 161 170 11 chr3 144881490 144881584 -14718199 - L1MC LINE L1 -2412 3734 3626 4 1690 325 309 65 39 chr3 144881594 144881823 -14717960 - L1MC LINE L1 -3001 3145 2911 4 1690 229 314 41 82 chr3 144881823 144881969 -14717814 + MLT2B1 LTR ERVL 106 245 -275 4 1690 230 316 63 0 chr3 144881981 144882076 -14717707 + MLT2B1 LTR ERVL 394 494 -73 4 1690 264 122 0 0 chr3 144882077 144882118 -14717665 + (TC)n Simple_repeat Simple_repeat 1 41 0 4 1690 315 0 0 0 chr3 144882118 144882153 -14717630 + (TG)n Simple_repeat Simple_repeat 2 36 0 4 1690 1104 280 37 28 chr3 144882719 144883042 -14716741 - ORR1E LTR MaLR -33 326 1 5 1690 324 0 0 0 chr3 144883643 144883679 -14716104 + (TAAA)n Simple_repeat Simple_repeat 1 36 0 5 1690 254 366 86 35 chr3 144885187 144885385 -14714398 + MIRb SINE MIR 61 268 0 5 1690 261 0 0 0 chr3 144885675 144885704 -14714079 + (TG)n Simple_repeat Simple_repeat 1 29 0 5 1690 471 259 104 0 chr3 144886518 144886653 -14713130 - B3A SINE B2 -33 165 17 5 1690 1554 238 21 98 chr3 144887057 144887590 -14712193 + RMER19C LTR ERVK 1 426 -185 5 1690 207 0 0 0 chr3 144887590 144887613 -14712170 + (CTG)n Simple_repeat Simple_repeat 3 25 0 5 1690 1554 283 41 98 chr3 144887613 144887810 -14711973 + RMER19C LTR ERVK 427 611 0 5 1690 182 385 21 2 chr3 144888748 144888862 -14710921 + MIRb SINE MIR 48 165 -103 5 1690 577 339 99 51 chr3 144888891 144889219 -14710564 + ORR1E LTR MaLR 1 344 -15 5 1690 3597 294 77 37 chr3 144889219 144890632 -14709151 + ORR1E-int LTR MaLR 1 1551 -29 5 1690 365 250 31 125 chr3 144890630 144890758 -14709025 + ORR1E LTR MaLR 16 131 -228 5 1690 375 352 24 24 chr3 144890794 144890960 -14708823 + ORR1E LTR MaLR 206 371 -8 5 1690 24 53 0 0 chr3 144891124 144891162 -14708621 + AT_rich Low_complexity Low_complexity 1 38 0 5 1690 261 313 40 0 chr3 144891369 144891468 -14708315 - PB1D9 SINE Alu -1 119 17 5 1690 1266 45 0 0 chr3 144891895 144892052 -14707731 + (TTTC)n Simple_repeat Simple_repeat 2 158 0 5 1690 543 165 10 0 chr3 144892052 144892155 -14707628 - Lx6 LINE L1 -9 7451 7348 5 1690 271 292 45 110 chr3 144892839 144892993 -14706790 - L1MEg LINE L1 -5917 167 24 5 1690 1125 273 20 43 chr3 144893279 144893578 -14706205 + B4 SINE B4 1 292 0 5 1690 217 75 50 0 chr3 144893597 144893637 -14706146 + (GA)n Simple_repeat Simple_repeat 2 43 0 5 1690 221 53 0 50 chr3 144894068 144894108 -14705675 + (CAA)n Simple_repeat Simple_repeat 2 39 0 5 1690 422 108 0 12 chr3 144894816 144894900 -14704883 + (TCTA)n Simple_repeat Simple_repeat 3 85 0 5 1690 1033 307 75 14 chr3 144895042 144895471 -14704312 - MLT1C LTR MaLR 0 467 13 5 1690 857 235 191 33 chr3 144896653 144896957 -14702826 - MTE2a LTR MaLR -27 352 1 5 1690 409 335 0 0 chr3 144897514 144897678 -14702105 + (CCCCAG)n Simple_repeat Simple_repeat 1 164 0 5 1690 192 357 42 14 chr3 144898214 144898285 -14701498 - L2b LINE L2 -19 3356 3284 5 1690 313 265 92 124 chr3 144901190 144901298 -14698485 - L1MEg LINE L1 -2016 4124 4028 5 1690 2043 174 37 8 chr3 144901298 144901681 -14698102 - Lx4B LINE L1 -4 7054 6661 5 1690 337 249 85 82 chr3 144901681 144901883 -14697900 - L1MEg LINE L1 -2113 4033 3829 5 1690 409 62 31 0 chr3 144902016 144902081 -14697702 + (TA)n Simple_repeat Simple_repeat 2 68 0 5 1690 509 328 30 79 chr3 144902175 144902440 -14697343 - Lx9 LINE L1 -451 7193 6942 5 1690 2224 39 0 0 chr3 144902440 144902700 -14697083 + L1Md_F2 LINE L1 5327 5586 -297 5 1690 8310 46 21 9 chr3 144902700 144903683 -14696100 + L1Md_F2 LINE L1 5587 6581 -1 5 1690 236 159 0 42 chr3 144903690 144903762 -14696021 + A-rich Low_complexity Low_complexity 1 69 0 5 1690 311 319 105 77 chr3 144904328 144904576 -14695207 - L1MEg LINE L1 -5793 449 195 5 1690 219 336 123 13 chr3 144904687 144904841 -14694942 - MIR SINE MIR -25 237 67 5 1690 1084 317 54 9 chr3 144906213 144906674 -14693109 - Lx8 LINE L1 -560 6913 6432 5 1690 280 200 12 12 chr3 144906821 144906902 -14692881 + GA-rich Low_complexity Low_complexity 2 82 0 5 1690 265 254 68 137 chr3 144907237 144907383 -14692400 - MTEa LTR MaLR -242 137 2 5 1690 303 320 16 23 chr3 144907514 144907642 -14692141 + B4A SINE B4 1 127 -165 5 1690 346 321 22 105 chr3 144908252 144908354 -14691429 + MTEa LTR MaLR 1 92 -287 5 1690 2960 48 0 30 chr3 144908354 144908719 -14691064 + L1Md_F2 LINE L1 6228 6581 -1 5 1690 346 321 22 105 chr3 144908719 144908797 -14690986 + MTEa LTR MaLR 93 166 -213 5 1690 253 338 44 37 chr3 144911626 144911761 -14688022 - RMER4A LTR ERVK -303 163 28 5 1690 189 74 0 0 chr3 144912949 144912976 -14686807 + (ATG)n Simple_repeat Simple_repeat 1 27 0 5 1690 1081 148 53 94 chr3 144912976 144913318 -14686465 - RMER17C LTR ERVK -1 409 82 5 1690 3636 59 0 0 chr3 144913340 144913799 -14685984 - MusHAL1 LINE L1 -1197 1515 1057 5 1690 7052 89 63 0 chr3 144913798 144914775 -14685008 + Lx LINE L1 5610 6648 -6 5 1690 784 147 8 0 chr3 144914777 144914906 -14684877 - RMER17C LTR ERVK -280 130 1 5 1690 270 176 0 0 chr3 144914915 144914966 -14684817 + (TTA)n Simple_repeat Simple_repeat 2 52 0 5 1690 2434 82 3 0 chr3 144916479 144916797 -14682986 - ORR1A2 LTR MaLR -8 319 1 5 1690 919 244 54 0 chr3 144916914 144917119 -14682664 + B3 SINE B2 1 216 0 5 1690 486 0 0 0 chr3 144917394 144917448 -14682335 + (TG)n Simple_repeat Simple_repeat 1 54 0 5 1690 234 341 34 0 chr3 144917944 144918032 -14681751 - L3b LINE CR1 -352 130 40 5 1690 722 268 50 4 chr3 144920451 144920691 -14679092 - MER2 DNA MER2_type -6 339 89 5 1690 771 19 29 0 chr3 144920820 144920925 -14678858 + (TAGA)n Simple_repeat Simple_repeat 2 109 0 5 1690 565 262 63 94 chr3 144921011 144921234 -14678549 - MLT2C1 LTR ERVL -129 268 53 5 1690 682 292 124 23 chr3 144922145 144922411 -14677372 - LTR41B LTR ERVL -5 753 461 5 1690 255 372 9 17 chr3 144922717 144922832 -14676951 - LTR41B LTR ERVL -626 132 19 5 1690 2185 206 87 25 chr3 144923320 144923927 -14675856 - RCHARR1 DNA MER1_type -3 971 327 5 1690 528 45 0 0 chr3 144923980 144924047 -14675736 + (TC)n Simple_repeat Simple_repeat 2 68 0 5 1690 201 169 0 0 chr3 144924047 144924106 -14675677 + (TG)n Simple_repeat Simple_repeat 1 59 0 5 1690 582 277 154 39 chr3 144924116 144924375 -14675408 - B4A SINE B4 0 292 4 5 1690 432 0 0 0 chr3 144924528 144924576 -14675207 + (TG)n Simple_repeat Simple_repeat 2 49 0 5 1690 239 250 19 0 chr3 144925370 144925422 -14674361 + MER63D DNA AcHobo 313 365 -696 5 1690 342 91 0 0 chr3 144927378 144927433 -14672350 + (GAAA)n Simple_repeat Simple_repeat 2 56 0 5 1690 258 320 50 0 chr3 144927560 144927660 -14672123 - PB1D7 SINE Alu -13 107 3 5 1690 191 36 36 0 chr3 144928085 144928113 -14671670 + (TTG)n Simple_repeat Simple_repeat 2 30 0 5 1690 671 284 199 10 chr3 144928206 144928493 -14671290 + RMER5 LTR ERV1 33 373 -161 5 1690 6591 68 2 0 chr3 144928493 144929337 -14670446 + L1_Mm LINE L1 4519 5364 -519 5 1690 639 231 43 12 chr3 144929337 144929499 -14670284 + RMER5 LTR ERV1 366 532 -2 5 1690 189 154 0 0 chr3 144929740 144929779 -14670004 + A-rich Low_complexity Low_complexity 6 44 0 5 1690 305 349 201 11 chr3 144930501 144930675 -14669108 - MER58A DNA MER1_type -17 207 1 5 1690 186 133 0 0 chr3 144930803 144930833 -14668950 + (TG)n Simple_repeat Simple_repeat 2 31 0 5 1690 482 275 8 32 chr3 144930883 144931007 -14668776 - RSINE1 SINE B4 -44 121 1 5 1690 364 184 473 11 chr3 144931029 144931203 -14668580 - Lx9 LINE L1 -3 7641 7388 5 1690 235 245 26 155 chr3 144931205 144931321 -14668462 + LTR78 LTR ERV1 329 429 -875 5 1690 333 328 33 16 chr3 144931376 144931497 -14668286 - MIRb SINE MIR -110 158 36 5 1690 514 357 119 14 chr3 144932856 144933225 -14666558 - MLT1C LTR MaLR -2 465 58 5 1690 235 306 108 20 chr3 144934266 144934469 -14665314 + L1MEf LINE L1 803 1023 -5071 5 1690 496 313 46 32 chr3 144934625 144934909 -14664874 + B4A SINE B4 5 292 0 5 1690 309 109 0 0 chr3 144934949 144934995 -14664788 + (TC)n Simple_repeat Simple_repeat 1 46 0 5 1690 290 245 78 0 chr3 144935254 144935350 -14664433 + L1MEf LINE L1 1357 1465 -4735 5 1690 903 265 44 5 chr3 144935518 144935723 -14664060 + B3 SINE B2 2 214 -2 5 1690 389 277 10 41 chr3 144935982 144936080 -14663703 + PB1D7 SINE Alu 1 95 -25 5 1690 455 259 0 72 chr3 144936088 144936213 -14663570 + PB1D10 SINE Alu 1 116 -1 5 1690 4278 105 24 0 chr3 144936446 144937041 -14662742 + L1_Mur2 LINE L1 4021 4621 -1256 5 1690 264 59 0 0 chr3 144937041 144937075 -14662708 + (CAA)n Simple_repeat Simple_repeat 2 35 0 5 1690 4278 105 24 0 chr3 144937075 144937108 -14662675 + L1_Mur2 LINE L1 4622 4663 -1214 5 1690 336 214 29 0 chr3 144937119 144937189 -14662594 + L1M5 LINE L1 5727 5798 -646 5 1690 189 235 0 34 chr3 144938140 144938228 -14661555 + (CA)n Simple_repeat Simple_repeat 1 85 0 5 1690 299 217 6 38 chr3 144938265 144938423 -14661360 + (CA)n Simple_repeat Simple_repeat 2 154 0 5 1690 232 227 33 8 chr3 144938396 144938516 -14661267 + (CATA)n Simple_repeat Simple_repeat 4 126 0 5 1690 429 238 0 0 chr3 144939601 144939723 -14660060 + (TG)n Simple_repeat Simple_repeat 2 123 0 5 1690 246 255 94 21 chr3 144939831 144939927 -14659856 + MTEb LTR MaLR 273 375 -4 5 1690 246 296 99 30 chr3 144940100 144940201 -14659582 + MIR3 SINE MIR 92 199 -9 5 1690 6016 150 24 4 chr3 144941809 144942761 -14657022 - Lx2 LINE L1 0 6997 6027 5 1690 645 245 7 7 chr3 144945615 144945759 -14654024 + RSINE1 SINE B4 2 145 -20 5 1690 297 0 0 0 chr3 144945791 144945824 -14653959 + (GA)n Simple_repeat Simple_repeat 2 34 0 5 1690 1613 186 54 38 chr3 144945845 144946213 -14653570 + ORR1D1 LTR MaLR 1 374 0 5 1690 450 239 0 18 chr3 144946246 144946357 -14653426 - B1F SINE Alu -40 109 1 5 1690 552 285 33 5 chr3 144947156 144947340 -14652443 - B3A SINE B2 0 216 27 5 1690 1803 134 60 0 chr3 144947352 144947650 -14652133 - Lx2 LINE L1 -1 6996 6681 5 1690 951 65 0 0 chr3 144947650 144947773 -14652010 + Lx2B LINE L1 6556 6678 -322 5 1690 378 0 0 0 chr3 144949290 144949332 -14650451 + (TG)n Simple_repeat Simple_repeat 2 43 0 5 1690 828 170 7 13 chr3 144949396 144949545 -14650238 - B1_Mur1 SINE Alu 0 149 2 5 1690 405 0 0 0 chr3 144949635 144949680 -14650103 + (CA)n Simple_repeat Simple_repeat 1 45 0 5 1690 1523 215 90 45 chr3 144950240 144950727 -14649056 - RLTR11A2 LTR ERVK 0 527 19 5 1690 756 133 21 0 chr3 144952022 144952165 -14647618 + CT-rich Low_complexity Low_complexity 2 147 0 5 1690 470 118 0 11 chr3 144952493 144952587 -14647196 + (TC)n Simple_repeat Simple_repeat 1 93 0 5 1690 730 190 44 0 chr3 144952620 144952757 -14647026 + B3A SINE B2 1 143 -55 5 1690 369 0 0 0 chr3 144952782 144952823 -14646960 + (CA)n Simple_repeat Simple_repeat 1 41 0 5 1690 397 299 38 65 chr3 144953503 144953689 -14646094 - B4A SINE B4 -2 290 110 5 1690 286 272 108 48 chr3 144954013 144954179 -14645604 + MIR SINE MIR 58 233 -35 5 1690 1109 45 30 0 chr3 144958140 144958274 -14641509 + B1_Mus1 SINE Alu 2 139 -9 6 1690 209 57 0 28 chr3 144958274 144958310 -14641473 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 6 1690 440 307 37 28 chr3 144958648 144958866 -14640917 + ID_B1 SINE B4 1 220 -4 6 1690 223 314 35 11 chr3 144959258 144959345 -14640438 - L2b LINE L2 0 3375 3287 6 1690 383 55 0 18 chr3 144959349 144959404 -14640379 + (CACCC)n Simple_repeat Simple_repeat 3 56 0 6 1690 304 333 0 0 chr3 144959509 144959611 -14640172 + G-rich Low_complexity Low_complexity 6 107 0 6 1690 843 284 43 76 chr3 144961106 144961368 -14638415 + B4A SINE B4 2 259 -33 6 1690 252 86 0 0 chr3 144961368 144961403 -14638380 + (CA)n Simple_repeat Simple_repeat 2 36 0 6 1690 843 284 43 76 chr3 144961403 144961441 -14638342 + B4A SINE B4 260 292 0 6 1690 209 292 81 30 chr3 144961628 144961727 -14638056 + MER5A DNA MER1_type 1 104 -85 6 1690 226 284 0 112 chr3 144961937 144961967 -14637816 + ID_B1 SINE B4 129 152 -72 6 1690 949 312 80 3 chr3 144961967 144962317 -14637466 - MTEa LTR MaLR 0 379 3 6 1690 226 284 0 112 chr3 144962317 144962393 -14637390 + ID_B1 SINE B4 153 223 -1 6 1690 670 242 33 11 chr3 144963334 144963518 -14636265 + B3A SINE B2 2 189 -9 6 1690 338 0 24 0 chr3 144964290 144964332 -14635451 + (TG)n Simple_repeat Simple_repeat 1 43 0 6 211 9164 31 0 0 chr3 144964591 144966334 -14633449 - L1Md_A LINE L1 0 6582 4840 6 1691 338 239 121 43 chr3 144966406 144966546 -14633237 - HAL1 LINE L1 -1084 1423 1273 6 1691 326 0 68 0 chr3 144966701 144966745 -14633038 + (CATATA)n Simple_repeat Simple_repeat 2 48 0 6 1691 222 348 26 18 chr3 144968168 144968282 -14631501 + MIR SINE MIR 14 128 -134 6 1691 180 267 22 0 chr3 144968397 144968442 -14631341 - MIRc SINE MIR -190 78 33 6 1691 392 275 27 53 chr3 144968678 144968866 -14630917 - Lx8 LINE L1 -2 7471 7289 6 1691 292 94 38 0 chr3 144969506 144969559 -14630224 + (CAAAA)n Simple_repeat Simple_repeat 3 57 0 6 1691 272 283 126 6 chr3 144970569 144970736 -14629047 + MIR SINE MIR 65 251 -11 6 1691 2393 106 3 0 chr3 144970773 144971095 -14628688 - ORR1A2 LTR MaLR 0 327 5 6 1691 426 121 0 0 chr3 144971281 144971347 -14628436 + (TC)n Simple_repeat Simple_repeat 1 66 0 6 1691 236 163 20 0 chr3 144971833 144971882 -14627901 - RMER15 LTR ERVL -525 50 1 6 1691 193 329 40 0 chr3 144972083 144972159 -14627624 + MIRm SINE MIR 87 165 -111 6 1691 871 267 28 5 chr3 144972171 144972382 -14627401 - B3 SINE B2 0 216 1 6 1691 896 183 136 10 chr3 144972669 144972868 -14626915 + URR1B DNA MER1_type 1 224 -1 6 1691 22 0 0 0 chr3 144973328 144973350 -14626433 + AT_rich Low_complexity Low_complexity 1 22 0 6 1691 503 249 6 0 chr3 144976593 144976762 -14623021 + (TG)n Simple_repeat Simple_repeat 1 170 0 6 1691 978 212 40 0 chr3 144979317 144979515 -14620268 - B3 SINE B2 -7 209 4 6 1691 570 98 0 0 chr3 144979674 144979756 -14620027 + (TA)n Simple_repeat Simple_repeat 2 83 0 6 1691 415 252 87 13 chr3 144980086 144980235 -14619548 + B3A SINE B2 1 160 -38 6 1691 564 56 0 0 chr3 144980245 144980317 -14619466 + (CA)n Simple_repeat Simple_repeat 1 72 0 6 1691 277 326 102 27 chr3 144980527 144980713 -14619070 - MIRb SINE MIR -32 236 37 6 1691 498 143 0 0 chr3 144981719 144981810 -14617973 + (TA)n Simple_repeat Simple_repeat 1 91 0 6 1691 933 302 89 55 chr3 144981873 144982785 -14616998 - L1MA4 LINE L1 -125 6175 5181 6 1691 690 268 108 0 chr3 144982790 144982984 -14616799 - B3 SINE B2 0 216 2 6 1691 213 143 0 23 chr3 144983201 144983244 -14616539 + (CAAA)n Simple_repeat Simple_repeat 2 43 0 6 1691 365 318 13 7 chr3 144984418 144984573 -14615210 + C-rich Low_complexity Low_complexity 5 160 0 6 1691 200 256 0 11 chr3 144984577 144984664 -14615119 + CT-rich Low_complexity Low_complexity 2 87 0 6 1691 456 260 18 2 chr3 144986500 144986623 -14613160 + MTD LTR MaLR 171 293 -128 6 1691 285 288 40 49 chr3 144986681 144986806 -14612977 - PB1 SINE Alu 0 127 3 6 1691 243 278 19 76 chr3 144987353 144987458 -14612325 - MLT1A1 LTR MaLR -9 399 301 6 1691 29 60 0 0 chr3 144988717 144988767 -14611016 + AT_rich Low_complexity Low_complexity 1 50 0 6 1691 614 282 124 32 chr3 144988771 144989020 -14610763 + B4A SINE B4 1 272 -20 6 1691 242 200 36 0 chr3 144989061 144989116 -14610667 + (CATA)n Simple_repeat Simple_repeat 1 57 0 6 1691 763 142 18 12 chr3 144990102 144990266 -14609517 + (TG)n Simple_repeat Simple_repeat 2 166 0 6 1691 21 0 0 0 chr3 144990266 144990287 -14609496 + AT_rich Low_complexity Low_complexity 1 21 0 6 1691 325 229 11 44 chr3 144990288 144990471 -14609312 + (TATG)n Simple_repeat Simple_repeat 2 178 0 6 1691 442 200 6 35 chr3 144990436 144990607 -14609176 + (TG)n Simple_repeat Simple_repeat 2 167 0 6 1691 300 345 58 65 chr3 144990632 144990908 -14608875 - B4 SINE B4 -14 278 5 6 1691 259 339 104 8 chr3 144990935 144991060 -14608723 - B1F1 SINE Alu -12 137 1 6 1691 24 0 0 0 chr3 144991079 144991103 -14608680 + AT_rich Low_complexity Low_complexity 1 24 0 6 1691 387 290 111 51 chr3 144992202 144992518 -14607265 - ORR1E LTR MaLR -1 358 24 6 1691 189 302 112 28 chr3 144993536 144993679 -14606104 - MIRb SINE MIR -88 180 26 6 1691 243 0 0 0 chr3 144994265 144994292 -14605491 + (T)n Simple_repeat Simple_repeat 1 27 0 6 1691 446 294 20 53 chr3 144995441 144995592 -14604191 + RSINE1 SINE B4 3 148 -17 6 1691 25 65 0 0 chr3 144995622 144995668 -14604115 + AT_rich Low_complexity Low_complexity 1 46 0 6 1691 681 111 0 0 chr3 144996040 144996148 -14603635 - B1_Mus2 SINE Alu 0 147 40 6 1691 194 0 0 161 chr3 144996157 144996331 -14603452 + (CTCTG)n Simple_repeat Simple_repeat 5 150 0 6 1691 255 68 65 43 chr3 144996332 144996378 -14603405 - B1_Mus2 SINE Alu -88 59 13 6 1691 187 326 118 11 chr3 144997038 144997131 -14602652 - MIR3 SINE MIR -11 197 95 6 1691 330 198 19 19 chr3 144997423 144997531 -14602252 + CT-rich Low_complexity Low_complexity 2 109 0 6 1691 213 271 155 10 chr3 144998509 144998606 -14601177 + MIRb SINE MIR 71 181 -87 6 1691 303 279 70 54 chr3 144998842 144998971 -14600812 - MLT1A1 LTR MaLR 0 408 278 6 1691 948 254 43 14 chr3 144999628 144999907 -14599876 + B4A SINE B4 6 292 0 6 1691 305 214 0 54 chr3 145000581 145000655 -14599128 + ID4_ SINE ID 1 70 -13 1 1691 593 216 48 78 chr3 145002012 145002178 -14597605 + B4 SINE B4 132 292 0 2 1691 265 340 48 36 chr3 145003360 145003525 -14596258 + MIR SINE MIR 22 188 -74 3 1691 787 192 30 16 chr3 145004241 145004415 -14595368 + B3 SINE B2 6 185 -10 4 1691 27 29 0 0 chr3 145004434 145004468 -14595315 + AT_rich Low_complexity Low_complexity 1 34 0 5 1691 381 254 14 87 chr3 145004785 145004923 -14594860 - MLT1A0 LTR MaLR -237 128 1 6 1691 216 0 0 0 chr3 145005305 145005329 -14594454 + (TTA)n Simple_repeat Simple_repeat 1 24 0 7 1691 292 97 32 0 chr3 145006388 145006450 -14593333 + (TA)n Simple_repeat Simple_repeat 2 65 0 8 1691 225 0 0 0 chr3 145008145 145008170 -14591613 + (CA)n Simple_repeat Simple_repeat 1 25 0 9 1691 380 269 90 30 chr3 145009250 145009384 -14590399 + RMER30 DNA MER1_type 1 142 -60 1 1691 753 208 96 126 chr3 145009938 145010208 -14589575 + Lx5 LINE L1 6786 7047 -3 1 1691 23 0 0 0 chr3 145010255 145010278 -14589505 + AT_rich Low_complexity Low_complexity 1 23 0 1 1691 22 35 0 0 chr3 145012439 145012468 -14587315 + AT_rich Low_complexity Low_complexity 1 29 0 1 1691 543 31 0 0 chr3 145012755 145012820 -14586963 + (TA)n Simple_repeat Simple_repeat 1 65 0 1 1691 412 321 22 7 chr3 145012913 145013048 -14586735 + Zaphod DNA Tip100 51 187 -3844 1 1691 923 327 141 25 chr3 145013050 145013533 -14586250 - MLT1F LTR MaLR 0 548 10 1 1691 252 0 0 0 chr3 145013701 145013729 -14586054 + (TG)n Simple_repeat Simple_repeat 2 29 0 1 1691 912 128 0 0 chr3 145015006 145015185 -14584598 + (TG)n Simple_repeat Simple_repeat 2 180 0 1 1691 300 151 0 19 chr3 145015193 145015247 -14584536 - HAL1-3A_ME LINE L1 -830 2028 1976 1 1691 948 140 0 0 chr3 145015262 145015622 -14584161 + (TG)n Simple_repeat Simple_repeat 1 360 0 2 1691 880 285 24 44 chr3 145015930 145016227 -14583556 - B4A SINE B4 0 292 2 2 1691 579 264 110 21 chr3 145016245 145016481 -14583302 - L1MB7 LINE L1 -11 6173 5917 2 1691 2021 175 70 13 chr3 145016649 145017037 -14582746 + MTC LTR MaLR 12 421 0 2 1691 180 0 0 0 chr3 145017428 145017448 -14582335 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 2 1691 4613 38 0 4 chr3 145017450 145018002 -14581781 - L1Md_F3 LINE L1 -22 6562 6013 2 1691 470 311 7 36 chr3 145018085 145018225 -14581558 + RSINE1 SINE B4 15 150 -15 2 1691 294 29 0 0 chr3 145018275 145018310 -14581473 + (CTG)n Simple_repeat Simple_repeat 1 35 0 2 1691 225 0 0 0 chr3 145018941 145018966 -14580817 + (T)n Simple_repeat Simple_repeat 1 25 0 2 1691 1213 61 0 26 chr3 145018966 145019117 -14580666 - B1_Mus1 SINE Alu 0 148 2 2 1691 246 169 0 0 chr3 145019190 145019255 -14580528 + CT-rich Low_complexity Low_complexity 2 66 0 3 1691 646 156 7 0 chr3 145019254 145019547 -14580236 + (TG)n Simple_repeat Simple_repeat 1 295 0 3 1691 396 247 135 82 chr3 145019548 145019755 -14580028 - B4 SINE B4 -2 290 73 3 1691 214 319 59 42 chr3 145023487 145023605 -14576178 - B1_Mur4 SINE Alu 0 150 31 3 1691 659 280 28 17 chr3 145024290 145024468 -14575315 + B3A SINE B2 3 182 -16 3 1691 287 320 69 25 chr3 145025834 145025994 -14573789 - MIR SINE MIR -26 236 70 3 1691 650 294 147 23 chr3 145027247 145027505 -14572278 + B4 SINE B4 2 291 -1 3 1691 315 0 0 0 chr3 145028044 145028079 -14571704 + (TG)n Simple_repeat Simple_repeat 2 36 0 3 1691 186 301 63 103 chr3 145029005 145029131 -14570652 - MIRb SINE MIR -31 237 117 3 1691 189 0 0 0 chr3 145029240 145029261 -14570522 + (CAAAAA)n Simple_repeat Simple_repeat 2 22 0 3 1691 363 256 0 37 chr3 145029317 145029479 -14570304 + (CATA)n Simple_repeat Simple_repeat 4 159 0 4 1691 22 56 0 0 chr3 145029758 145029794 -14569989 + AT_rich Low_complexity Low_complexity 1 36 0 4 1691 821 301 7 40 chr3 145031602 145031879 -14567904 - Lx9 LINE L1 -464 7180 6913 4 1691 656 259 17 28 chr3 145032748 145032927 -14566856 - B3A SINE B2 -19 179 3 4 1691 475 304 65 22 chr3 145033318 145033579 -14566204 + Lx7 LINE L1 6945 7239 -234 4 1691 243 0 0 0 chr3 145034156 145034183 -14565600 + (TTCA)n Simple_repeat Simple_repeat 3 29 0 4 1691 190 305 83 24 chr3 145034265 145034349 -14565434 + MIR SINE MIR 90 178 -84 4 1691 234 254 17 0 chr3 145034459 145034518 -14565265 + GA-rich Low_complexity Low_complexity 6 65 0 4 1691 468 0 0 0 chr3 145034624 145034676 -14565107 + (GA)n Simple_repeat Simple_repeat 1 52 0 4 1691 515 317 25 0 chr3 145034687 145034848 -14564935 - B3A SINE B2 -33 165 1 4 1691 408 215 106 49 chr3 145035194 145035336 -14564447 + L1MA4 LINE L1 5776 5925 -375 5 1691 536 29 14 0 chr3 145035510 145035580 -14564203 + (GGGA)n Simple_repeat Simple_repeat 1 71 0 5 1691 563 223 28 130 chr3 145036129 145036345 -14563438 - B3A SINE B2 0 198 5 5 1691 261 0 0 0 chr3 145036509 145036538 -14563245 + (TG)n Simple_repeat Simple_repeat 2 30 0 5 1691 964 253 86 19 chr3 145036584 145036898 -14562885 - Lx8 LINE L1 -116 7357 7023 5 1691 392 300 54 77 chr3 145037093 145037343 -14562440 - L1M4 LINE L1 -1487 4659 4417 5 1691 261 0 0 0 chr3 145037343 145037372 -14562411 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 5 1691 802 138 33 86 chr3 145037374 145037525 -14562258 - B1_Mur3 SINE Alu -6 143 1 5 1691 392 300 54 77 chr3 145037525 145037621 -14562162 - L1M4 LINE L1 -1730 4416 4318 5 1691 191 208 18 70 chr3 145038350 145038407 -14561376 + L2 LINE L2 216 269 -3150 5 1691 359 313 77 12 chr3 145038916 145039084 -14560699 - ERVL-B4-int LTR ERVL -1396 4318 4140 5 1691 588 364 63 14 chr3 145040191 145040604 -14559179 - HERV16-int LTR ERVL -2116 2880 2448 6 1691 293 186 14 0 chr3 145040738 145040808 -14558975 + (CA)n Simple_repeat Simple_repeat 2 72 0 6 1691 504 0 0 0 chr3 145041266 145041322 -14558461 + (GA)n Simple_repeat Simple_repeat 1 56 0 6 1691 619 291 18 18 chr3 145042439 145042607 -14557176 + B3A SINE B2 1 168 -30 6 1691 527 153 0 24 chr3 145042611 145042738 -14557045 + CT-rich Low_complexity Low_complexity 2 125 0 6 1691 269 261 0 0 chr3 145043267 145043332 -14556451 + GA-rich Low_complexity Low_complexity 2 66 0 6 1691 289 281 202 0 chr3 145043339 145043428 -14556355 + PB1D10 SINE Alu 1 107 -10 6 1691 434 329 86 23 chr3 145043859 145044161 -14555622 - LTR40b LTR ERVL -23 439 119 6 1691 1318 215 166 113 chr3 145044464 145044899 -14554884 + MT2A LTR ERVL 6 463 -70 6 1691 181 262 0 129 chr3 145045316 145045386 -14554397 + L2a LINE L2 3361 3421 -5 6 1691 569 279 0 29 chr3 145045695 145045835 -14553948 - ID_B1 SINE B4 -2 222 87 7 1691 288 77 0 0 chr3 145046857 145046896 -14552887 + (T)n Simple_repeat Simple_repeat 1 39 0 7 1691 318 89 18 0 chr3 145046896 145046952 -14552831 - RMER15 LTR ERVL -105 470 414 7 1691 4209 51 0 16 chr3 145046952 145047475 -14552308 - L1Md_F2 LINE L1 0 6582 6072 7 1691 654 245 23 49 chr3 145047571 145047802 -14551981 + B4 SINE B4 1 286 -6 7 1691 900 203 83 91 chr3 145048401 145048655 -14551128 - MTEa LTR MaLR -3 376 125 7 1691 490 239 0 0 chr3 145048692 145048784 -14550999 - MTEa LTR MaLR -230 149 58 7 1691 380 294 11 0 chr3 145048784 145048876 -14550907 - MTEa LTR MaLR -286 93 1 7 1691 762 69 0 0 chr3 145049767 145049868 -14549915 + (TCC)n Simple_repeat Simple_repeat 2 102 0 7 1691 21 36 0 0 chr3 145050312 145050340 -14549443 + AT_rich Low_complexity Low_complexity 1 28 0 7 1691 339 303 135 12 chr3 145050802 145051046 -14548737 - L1MC5 LINE L1 -446 7515 7242 7 1691 406 268 37 126 chr3 145051131 145051481 -14548302 - L1MC5 LINE L1 -855 7106 6788 7 1691 195 42 0 0 chr3 145051619 145051643 -14548140 + (CAA)n Simple_repeat Simple_repeat 1 24 0 7 1691 433 255 0 14 chr3 145053263 145053406 -14546377 + (TG)n Simple_repeat Simple_repeat 2 142 0 8 1691 791 191 4 11 chr3 145053373 145053645 -14546138 + (TA)n Simple_repeat Simple_repeat 1 269 0 8 1691 238 302 41 49 chr3 145053660 145053782 -14546001 + RSINE1 SINE B4 35 155 -10 8 1691 666 247 88 24 chr3 145054116 145054286 -14545497 + B3A SINE B2 2 182 -16 8 1691 234 0 0 0 chr3 145054289 145054315 -14545468 + (TAA)n Simple_repeat Simple_repeat 2 27 0 8 1691 277 296 7 11 chr3 145054571 145054677 -14545106 - L2a LINE L2 0 3426 3283 8 1691 269 239 42 74 chr3 145054678 145054773 -14545010 + B4 SINE B4 1 92 -200 8 1691 251 289 13 0 chr3 145055015 145055091 -14544692 - MER53 DNA hAT -92 101 25 8 1691 295 130 0 0 chr3 145055054 145055100 -14544683 + MER53 DNA hAT 143 188 -5 8 1691 222 344 56 0 chr3 145055820 145055910 -14543873 + L2c LINE L2 3215 3309 -78 8 1691 22 0 0 0 chr3 145055910 145055932 -14543851 + AT_rich Low_complexity Low_complexity 1 22 0 9 1691 187 333 0 15 chr3 145056374 145056441 -14543342 - L2a LINE L2 -1 3386 3321 8 1691 734 267 18 0 chr3 145056539 145056721 -14543062 + B3A SINE B2 2 185 -31 9 1691 369 0 0 0 chr3 145056726 145056767 -14543016 + (CA)n Simple_repeat Simple_repeat 1 41 0 9 1691 667 264 20 25 chr3 145057047 145057245 -14542538 + B3 SINE B2 1 197 -19 9 1691 336 400 13 33 chr3 145057293 145057443 -14542340 + RSINE1 SINE B4 3 149 -16 9 1691 981 229 19 9 chr3 145058012 145058224 -14541559 + B3 SINE B2 3 216 0 9 1691 239 343 0 0 chr3 145059361 145059431 -14540352 + (TG)n Simple_repeat Simple_repeat 2 71 0 9 1691 889 252 138 20 chr3 145059512 145059909 -14539874 - L1MB2 LINE L1 -92 6079 5636 9 1691 649 302 129 40 chr3 145059949 145060446 -14539337 - L1MB2 LINE L1 -855 5285 4742 9 1691 1163 68 0 7 chr3 145060446 145060593 -14539190 - B1_Mus2 SINE Alu 0 147 2 9 1691 649 302 129 40 chr3 145060593 145060826 -14538957 - L1MB2 LINE L1 -1399 4741 4490 9 1691 1216 61 0 0 chr3 145061640 145061787 -14537996 + B1_Mus2 SINE Alu 1 147 0 9 1691 372 257 55 9 chr3 145063097 145063207 -14536576 + PB1D7 SINE Alu 1 115 -5 1 1691 279 0 0 0 chr3 145063237 145063268 -14536515 + (TGAA)n Simple_repeat Simple_repeat 2 32 0 1 1691 332 303 22 29 chr3 145063559 145063575 -14536208 + ID_B1 SINE B4 79 213 -11 1 1691 343 302 50 8 chr3 145063575 145063695 -14536088 + B1F SINE Alu 14 138 -11 1 1691 243 152 68 0 chr3 145063698 145063757 -14536026 + Lx9 LINE L1 7576 7638 -6 1 1691 31 26 0 0 chr3 145063771 145063809 -14535974 + AT_rich Low_complexity Low_complexity 1 38 0 1 1691 24 0 0 0 chr3 145063874 145063898 -14535885 + AT_rich Low_complexity Low_complexity 1 24 0 1 1691 24 0 0 0 chr3 145063943 145063967 -14535816 + AT_rich Low_complexity Low_complexity 1 24 0 1 1691 255 300 11 91 chr3 145064042 145064130 -14535653 - BC1_Mm scRNA scRNA -69 83 3 1 1691 1002 289 86 20 chr3 145066504 145066900 -14532883 - RMER5 LTR ERV1 0 534 113 1 1691 333 0 0 0 chr3 145066990 145067027 -14532756 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 1 1691 442 331 129 63 chr3 145067029 145067863 -14531920 + L2a LINE L2 2549 3426 0 1 1691 3351 58 24 4 chr3 145068131 145068597 -14531186 - Lx3_Mus LINE L1 -396 6613 6139 1 1691 2801 46 64 16 chr3 145068598 145068973 -14530810 + Lx3_Mus LINE L1 6609 7001 -8 1 1691 24 32 0 0 chr3 145068974 145069005 -14530778 + AT_rich Low_complexity Low_complexity 1 31 0 1 1691 271 187 194 9 chr3 145069005 145069113 -14530670 - LTR37B LTR ERV1 -18 450 323 1 1691 249 305 142 68 chr3 145069720 145069896 -14529887 - MamGypLTR1b LTR Gypsy -591 191 3 1 1691 446 268 117 40 chr3 145070100 145070322 -14529461 - MER33 DNA MER1_type -73 251 13 1 1691 235 239 240 83 chr3 145070995 145071091 -14528692 - RSINE1 SINE B4 -18 147 37 1 1691 925 225 16 11 chr3 145071155 145071339 -14528444 - B3 SINE B2 -30 186 2 1 1691 370 250 97 29 chr3 145071964 145072067 -14527716 + PB1D10 SINE Alu 6 115 -2 1 1691 359 322 59 0 chr3 145072337 145072455 -14527328 - B3A SINE B2 -72 126 2 1 1691 668 287 116 26 chr3 145072543 145072811 -14526972 + B4A SINE B4 1 292 0 1 1691 206 246 17 34 chr3 145072811 145072870 -14526913 + (CATA)n Simple_repeat Simple_repeat 3 60 0 1 1691 232 306 132 26 chr3 145073247 145073351 -14526432 - LTR48 LTR ERV1 -517 270 153 1 1691 506 29 15 0 chr3 145073351 145073419 -14526364 + (TG)n Simple_repeat Simple_repeat 1 69 0 1 1691 232 306 132 26 chr3 145073419 145073465 -14526318 - LTR48 LTR ERV1 -635 152 105 1 1691 231 133 0 0 chr3 145073468 145073513 -14526270 + (GA)n Simple_repeat Simple_repeat 2 46 0 1 1691 180 261 123 0 chr3 145073734 145073799 -14525984 - MIRb SINE MIR -14 254 182 1 1691 469 298 69 5 chr3 145074741 145074957 -14524826 + MER99 DNA hAT? 1 230 -601 1 1691 222 62 0 0 chr3 145075218 145075250 -14524533 + (T)n Simple_repeat Simple_repeat 1 32 0 1 1691 691 276 35 1 chr3 145075256 145075437 -14524346 - B3A SINE B2 -12 204 16 1 1691 344 218 8 91 chr3 145077343 145077464 -14522319 + PB1D10 SINE Alu 1 111 -6 1 1691 334 237 109 77 chr3 145077710 145077741 -14522042 - B2_Mm2 SINE B2 -6 189 162 1 1691 486 0 0 0 chr3 145077741 145077795 -14521988 + (TG)n Simple_repeat Simple_repeat 1 54 0 1 1691 396 237 109 77 chr3 145077795 145077946 -14521837 - B3A SINE B2 -30 168 1 1 1691 773 266 34 5 chr3 145078830 145079034 -14520749 - MER58A DNA MER1_type -1 223 14 1 1691 260 70 23 0 chr3 145079234 145079277 -14520506 + (TTTG)n Simple_repeat Simple_repeat 4 47 0 1 1691 575 338 59 53 chr3 145081476 145081622 -14518161 + ORR1E LTR MaLR 34 177 -182 1 1691 525 58 0 0 chr3 145081622 145081691 -14518092 + (TCC)n Simple_repeat Simple_repeat 3 71 0 1 1691 575 320 44 19 chr3 145081691 145081871 -14517912 + ORR1E LTR MaLR 178 416 -3 1 1691 410 344 27 16 chr3 145082134 145082317 -14517466 - HERV16-int LTR ERVL -4344 652 468 1 1691 21 0 0 0 chr3 145082328 145082349 -14517434 + AT_rich Low_complexity Low_complexity 1 21 0 1 1691 296 355 72 68 chr3 145082757 145083008 -14516775 - ORR1E LTR MaLR -9 350 99 1 1691 1029 190 20 15 chr3 145083600 145083803 -14515980 + B3 SINE B2 3 206 -10 1 1691 571 319 72 15 chr3 145083836 145084100 -14515683 + B4A SINE B4 2 280 -12 1 1691 356 240 10 0 chr3 145084149 145084249 -14515534 + GA-rich Low_complexity Low_complexity 3 103 0 1 1691 756 131 27 7 chr3 145084233 145084314 -14515469 + polypurine Low_complexity Low_complexity 2 82 0 1 1691 1487 22 6 0 chr3 145084314 145084493 -14515290 + (GAGAA)n Simple_repeat Simple_repeat 1 180 0 1 1691 756 131 27 7 chr3 145084493 145084557 -14515226 + polypurine Low_complexity Low_complexity 83 150 0 1 1691 23 0 0 0 chr3 145086057 145086080 -14513703 + AT_rich Low_complexity Low_complexity 1 23 0 1 1691 553 306 78 31 chr3 145086142 145086334 -14513449 + B4A SINE B4 1 201 -91 1 1691 690 13 0 0 chr3 145086358 145086437 -14513346 + (GA)n Simple_repeat Simple_repeat 2 80 0 1 1691 370 297 139 72 chr3 145086437 145086665 -14513118 + MLT1F1 LTR MaLR 78 310 -238 1 1691 431 342 65 7 chr3 145086861 145087170 -14512613 - L1M2 LINE L1 -919 5224 4898 1 1691 21 0 0 0 chr3 145087288 145087309 -14512474 + AT_rich Low_complexity Low_complexity 1 21 0 1 1691 698 178 18 6 chr3 145087435 145087599 -14512184 + GA-rich Low_complexity Low_complexity 3 168 0 1 1691 243 88 0 0 chr3 145087634 145087668 -14512115 + (GGA)n Simple_repeat Simple_repeat 3 36 0 1 1691 315 0 0 0 chr3 145088986 145089021 -14510762 + (CA)n Simple_repeat Simple_repeat 2 36 0 1 1691 360 43 0 0 chr3 145089108 145089154 -14510629 + (TG)n Simple_repeat Simple_repeat 1 46 0 1 1691 602 89 11 0 chr3 145089154 145089244 -14510539 + (GA)n Simple_repeat Simple_repeat 2 92 0 1 1691 705 106 0 0 chr3 145089545 145089658 -14510125 + (CA)n Simple_repeat Simple_repeat 1 113 0 1 1691 21 0 0 0 chr3 145089811 145089832 -14509951 + AT_rich Low_complexity Low_complexity 1 21 0 1 1691 691 254 181 26 chr3 145090346 145090668 -14509115 - MTD LTR MaLR -16 403 18 1 1691 3039 106 43 39 chr3 145091983 145092493 -14507290 - Lx3B LINE L1 -3 6970 6459 1 1691 322 355 49 37 chr3 145092936 145093182 -14506601 + L1MCa LINE L1 960 1208 -5300 1 1691 375 237 25 17 chr3 145093344 145093464 -14506319 + L1MA4 LINE L1 5816 5936 -364 1 1691 1234 48 0 0 chr3 145095748 145095895 -14503888 + B1_Mm SINE Alu 1 147 0 1 1691 21 36 0 0 chr3 145096627 145096655 -14503128 + AT_rich Low_complexity Low_complexity 1 28 0 1 1692 1693 284 40 12 chr3 145097080 145097655 -14502128 + Lx8 LINE L1 6241 6831 -642 1 1692 859 0 0 45 chr3 145097751 145097863 -14501920 - B1_Mus1 SINE Alu -8 140 34 1 1692 23 0 0 0 chr3 145098178 145098201 -14501582 + AT_rich Low_complexity Low_complexity 1 23 0 1 1692 26 0 0 0 chr3 145098654 145098680 -14501103 + AT_rich Low_complexity Low_complexity 1 26 0 1 1692 324 0 0 0 chr3 145099810 145099846 -14499937 + (TAA)n Simple_repeat Simple_repeat 2 37 0 1 1692 642 257 13 13 chr3 145099851 145100001 -14499782 + B3A SINE B2 1 150 -48 1 1692 252 59 0 0 chr3 145100009 145100043 -14499740 + (CA)n Simple_repeat Simple_repeat 2 35 0 1 1692 27 0 0 0 chr3 145100675 145100702 -14499081 + AT_rich Low_complexity Low_complexity 1 27 0 1 1692 1169 101 0 11 chr3 145103622 145103802 -14495981 + (GAAA)n Simple_repeat Simple_repeat 1 178 0 1 1692 228 135 0 0 chr3 145103802 145103839 -14495944 + (GA)n Simple_repeat Simple_repeat 1 37 0 1 1692 571 210 43 6 chr3 145103834 145104151 -14495632 + GA-rich Low_complexity Low_complexity 1 328 0 1 1692 12167 101 10 12 chr3 145106166 145108082 -14491701 - ETnERV2-int LTR ERVK -1184 6222 4558 1 1692 415 294 66 15 chr3 145108259 145108456 -14491327 - L1MEf LINE L1 -4551 1649 1443 1 1692 285 29 0 0 chr3 145108590 145108624 -14491159 + (CA)n Simple_repeat Simple_repeat 2 35 0 1 1692 315 0 0 0 chr3 145108625 145108660 -14491123 + (TAA)n Simple_repeat Simple_repeat 2 36 0 1 1692 1026 250 112 9 chr3 145109257 145109685 -14490098 + L1MB3 LINE L1 5650 6121 -62 1 1692 4725 76 43 3 chr3 145109707 145110365 -14489418 - L1_Mus3 LINE L1 -5 6633 5950 1 1692 586 145 7 7 chr3 145110819 145110958 -14488825 + (CATA)n Simple_repeat Simple_repeat 2 140 0 1 1692 1463 73 0 5 chr3 145111986 145112193 -14487590 - L1Md_F2 LINE L1 0 6582 6377 1 1692 185 152 0 0 chr3 145112523 145112556 -14487227 - MIRm SINE MIR -2 274 242 1 1692 880 289 38 23 chr3 145112716 145112978 -14486805 - MER2 DNA MER2_type -56 289 24 1 1692 795 234 14 43 chr3 145113643 145113853 -14485930 + B3 SINE B2 2 205 -11 1 1692 565 298 18 65 chr3 145113905 145114057 -14485726 + RSINE1 SINE B4 3 146 -19 1 1692 369 0 0 0 chr3 145114057 145114098 -14485685 + (CA)n Simple_repeat Simple_repeat 1 41 0 1 1692 565 298 18 65 chr3 145114098 145114114 -14485669 + RSINE1 SINE B4 147 162 -3 1 1692 1871 267 95 68 chr3 145115031 145115282 -14484501 + L1MC LINE L1 2659 2909 -3237 1 1692 444 266 129 0 chr3 145115282 145115421 -14484362 + RSINE1 SINE B4 5 161 -4 1 1692 1871 267 95 68 chr3 145115421 145115576 -14484207 + L1MC LINE L1 2910 3023 -3123 1 1692 439 212 305 12 chr3 145115576 145115743 -14484040 + B3 SINE B2 1 216 0 1 1692 1871 267 95 68 chr3 145115743 145116619 -14483164 + L1MC LINE L1 3024 3976 -2170 1 1692 952 72 0 56 chr3 145116821 145116982 -14482801 + (TA)n Simple_repeat Simple_repeat 2 153 0 1 1692 180 174 62 42 chr3 145117038 145117086 -14482697 + MIRb SINE MIR 174 222 -46 1 1692 1175 212 136 24 chr3 145117086 145117381 -14482402 - MTD LTR MaLR 0 419 92 1 1692 200 111 28 0 chr3 145118202 145118238 -14481545 + (TCTG)n Simple_repeat Simple_repeat 3 39 0 1 1692 803 166 6 0 chr3 145118580 145118737 -14481046 + CT-rich Low_complexity Low_complexity 3 160 0 1 1692 185 304 69 138 chr3 145119094 145119399 -14480384 - L2b LINE L2 -40 3335 3052 1 1692 451 299 16 0 chr3 145119687 145119814 -14479969 + B1F1 SINE Alu 5 133 -16 1 1692 259 242 0 20 chr3 145119829 145119930 -14479853 + GA-rich Low_complexity Low_complexity 1 99 0 1 1692 252 298 119 22 chr3 145120655 145120789 -14478994 - MIR SINE MIR -87 175 29 2 1692 332 343 21 0 chr3 145121138 145121278 -14478505 + Lx8 LINE L1 7174 7316 -157 2 1692 479 222 71 8 chr3 145122242 145122369 -14477414 - B1_Mur2 SINE Alu -12 137 3 2 1692 645 93 0 0 chr3 145123835 145123942 -14475841 + (TATG)n Simple_repeat Simple_repeat 2 108 0 2 1692 207 0 0 0 chr3 145124016 145124039 -14475744 + (GTTTG)n Simple_repeat Simple_repeat 2 24 0 2 1692 1031 31 0 8 chr3 145124039 145124161 -14475622 - B1_Mus1 SINE Alu -7 141 20 2 1692 698 274 57 24 chr3 145124161 145124248 -14475535 - ID_B1 SINE B4 -7 217 2 2 1692 464 234 19 0 chr3 145124505 145124723 -14475060 + (CA)n Simple_repeat Simple_repeat 1 222 0 2 1692 590 230 98 46 chr3 145125949 145126122 -14473661 + B3 SINE B2 1 182 -34 2 1692 249 269 59 15 chr3 145126642 145126710 -14473073 + ID4 SINE ID 2 72 -11 2 1692 450 0 0 0 chr3 145126731 145126781 -14473002 + (TG)n Simple_repeat Simple_repeat 1 50 0 2 1692 520 269 109 23 chr3 145128115 145128290 -14471493 + B3A SINE B2 1 190 -8 2 1692 754 273 86 61 chr3 145128594 145129003 -14470780 - MTD LTR MaLR 0 419 1 2 1692 265 333 11 53 chr3 145129997 145130092 -14469691 + B4A SINE B4 10 100 -192 2 1692 1429 54 27 5 chr3 145130673 145130699 -14469084 - B2_Mm1t SINE B2 -2 191 161 2 1692 243 0 0 0 chr3 145130699 145130726 -14469057 + (TTTA)n Simple_repeat Simple_repeat 3 29 0 2 1692 1429 54 27 5 chr3 145130726 145130886 -14468897 - B2_Mm1t SINE B2 -33 160 1 2 1692 567 222 6 22 chr3 145131192 145131372 -14468411 + GA-rich Low_complexity Low_complexity 2 178 0 2 1692 21 57 0 0 chr3 145132184 145132219 -14467564 + AT_rich Low_complexity Low_complexity 1 35 0 2 1692 216 0 0 0 chr3 145132584 145132608 -14467175 + (TTGG)n Simple_repeat Simple_repeat 4 27 0 2 1692 183 42 0 0 chr3 145132610 145132634 -14467149 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2 1692 1110 66 0 0 chr3 145132634 145132770 -14467013 - B1_Mus2 SINE Alu -10 137 2 2 1692 180 125 0 0 chr3 145133028 145133060 -14466723 + (CACCC)n Simple_repeat Simple_repeat 4 35 0 2 1692 1064 89 0 42 chr3 145133260 145133425 -14466358 + L1_Mus2 LINE L1 6407 6564 -2 2 1692 264 288 84 32 chr3 145133835 145134025 -14465758 - B3A SINE B2 -15 201 1 2 1692 189 200 0 0 chr3 145134304 145134339 -14465444 - L2a LINE L2 -1 3425 3391 2 1692 322 134 30 0 chr3 145135958 145136025 -14463758 + GA-rich Low_complexity Low_complexity 2 70 0 2 1692 447 118 0 0 chr3 145136094 145136179 -14463604 + (CA)n Simple_repeat Simple_repeat 1 85 0 2 1692 584 261 7 7 chr3 145136855 145136998 -14462785 + B1F2 SINE Alu 1 143 -6 2 1692 977 142 6 0 chr3 145138010 145138179 -14461604 + (TTTTC)n Simple_repeat Simple_repeat 1 170 0 2 1692 998 41 0 0 chr3 145138181 145138304 -14461479 - B1_Mus1 SINE Alu -23 125 3 2 1692 523 205 70 16 chr3 145138192 145138321 -14461462 - B4 SINE B4 -88 204 69 2 1692 37 0 0 0 chr3 145138471 145138508 -14461275 + AT_rich Low_complexity Low_complexity 1 37 0 2 1692 427 320 87 62 chr3 145138876 145139232 -14460551 - L1M5 LINE L1 -822 5324 4960 2 1692 304 254 0 50 chr3 145139959 145140079 -14459704 - L1M2 LINE L1 -1114 5029 4916 2 1692 1274 129 333 17 chr3 145140370 145140718 -14459065 - RMER6B LTR ERVK -2 459 2 2 1692 26 0 0 0 chr3 145142946 145142972 -14456811 + AT_rich Low_complexity Low_complexity 1 26 0 2 1692 450 36 0 0 chr3 145143367 145143423 -14456360 + (TG)n Simple_repeat Simple_repeat 2 57 0 2 1692 27 0 0 0 chr3 145143572 145143599 -14456184 + AT_rich Low_complexity Low_complexity 1 27 0 2 1692 7198 71 1 1 chr3 145144467 145145994 -14453789 - L1_Mus2 LINE L1 -1 6565 5038 2 1692 1266 142 5 5 chr3 145146485 145146683 -14453100 + URR1A DNA MER1_type 28 225 -1 2 1692 23 0 0 0 chr3 145147133 145147156 -14452627 + AT_rich Low_complexity Low_complexity 1 23 0 2 1692 496 295 84 6 chr3 145149562 145149729 -14450054 + B3A SINE B2 1 180 -18 2 1692 295 257 0 79 chr3 145149794 145149870 -14449913 + B4 SINE B4 223 292 0 2 1692 309 400 31 18 chr3 145150596 145150759 -14449024 - MIR3 SINE MIR -21 187 23 2 1692 21 36 0 0 chr3 145150812 145150840 -14448943 + AT_rich Low_complexity Low_complexity 1 28 0 2 1692 279 0 0 0 chr3 145151874 145151905 -14447878 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 2 1692 351 120 327 27 chr3 145152224 145152334 -14447449 - B2_Mm2 SINE B2 -6 189 47 2 1692 1211 109 17 0 chr3 145152400 145152575 -14447208 - B2_Mm1t SINE B2 -14 179 2 2 1692 198 0 0 0 chr3 145152770 145152792 -14446991 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 2 1692 1192 29 0 0 chr3 145152792 145152928 -14446855 - B1_Mm SINE Alu -10 137 2 2 1692 476 16 16 0 chr3 145153167 145153228 -14446555 + (TG)n Simple_repeat Simple_repeat 1 62 0 2 1692 233 338 26 0 chr3 145155027 145155104 -14444679 - ID4 SINE ID 0 83 5 2 1692 293 258 81 135 chr3 145155818 145155838 -14443945 - B2_Mm1a SINE B2 -52 141 126 2 1692 465 19 0 0 chr3 145155838 145155892 -14443891 + (TG)n Simple_repeat Simple_repeat 1 54 0 2 1692 584 248 88 2 chr3 145155892 145156019 -14443764 - B3A SINE B2 -61 137 2 2 1692 318 280 13 0 chr3 145156500 145156575 -14443208 + CT-rich Low_complexity Low_complexity 3 78 0 2 1692 220 268 139 47 chr3 145156576 145156662 -14443121 - PB1D10 SINE Alu -15 102 9 2 1692 1217 48 0 0 chr3 145157926 145158073 -14441710 - B1_Mus1 SINE Alu 0 148 2 2 1692 379 249 122 66 chr3 145158234 145158415 -14441368 + L1MD LINE L1 4116 4306 -1840 2 1692 821 266 44 64 chr3 145158711 145159008 -14440775 + B4A SINE B4 2 292 0 2 1692 528 226 5 9 chr3 145159017 145159242 -14440541 + (CATA)n Simple_repeat Simple_repeat 1 223 0 2 1692 350 87 0 0 chr3 145159244 145159290 -14440493 + HAL1-3A_ME LINE L1 1975 2020 -838 2 1692 21 82 0 0 chr3 145159454 145159503 -14440280 + AT_rich Low_complexity Low_complexity 1 49 0 2 1692 2644 41 0 0 chr3 145159918 145160235 -14439548 + L1Md_F2 LINE L1 6253 6569 -13 2 1692 624 27 0 0 chr3 145161707 145161781 -14438002 + (TC)n Simple_repeat Simple_repeat 1 74 0 2 1692 593 310 97 14 chr3 145162350 145162566 -14437217 - MIR SINE MIR -21 241 8 2 1692 210 236 121 52 chr3 145162672 145162788 -14436995 + L2c LINE L2 3237 3360 -27 2 1692 186 404 0 0 chr3 145162831 145162925 -14436858 + MIRb SINE MIR 137 230 -38 2 1692 393 22 0 0 chr3 145163175 145163221 -14436562 + (TAAA)n Simple_repeat Simple_repeat 4 49 0 2 1692 189 0 0 0 chr3 145164507 145164528 -14435255 + (CAAAAA)n Simple_repeat Simple_repeat 3 23 0 2 1692 262 273 42 91 chr3 145166266 145166284 -14433499 + YREP_Mm Unknown Unknown 161 313 -1495 2 1692 678 245 35 0 chr3 145166284 145166427 -14433356 - B1F SINE Alu -1 148 1 2 1692 648 38 0 0 chr3 145166795 145166874 -14432909 + (TAGA)n Simple_repeat Simple_repeat 2 80 0 2 1692 715 297 0 47 chr3 145167241 145167432 -14432351 + B3A SINE B2 1 182 -16 2 1692 1634 306 94 108 chr3 145167611 145169436 -14430347 - Cheshire DNA MER1_type -9 2411 678 2 1692 423 0 0 0 chr3 145169436 145169483 -14430300 + (TG)n Simple_repeat Simple_repeat 2 48 0 2 1692 1634 306 94 108 chr3 145169483 145170099 -14429684 - Cheshire DNA MER1_type -1743 677 6 2 1692 210 261 145 0 chr3 145170688 145170757 -14429026 + L2c LINE L2 3139 3217 -170 2 1692 26 0 0 0 chr3 145171411 145171437 -14428346 + AT_rich Low_complexity Low_complexity 1 26 0 2 1692 251 245 31 41 chr3 145172008 145172057 -14427726 + PB1D10 SINE Alu 21 117 0 2 1692 267 163 0 0 chr3 145172057 145172106 -14427677 + ID_B1 SINE B4 176 224 0 2 1692 350 256 239 63 chr3 145172119 145172357 -14427426 + B4 SINE B4 6 285 -7 2 1692 210 174 0 0 chr3 145172379 145172425 -14427358 + (CA)n Simple_repeat Simple_repeat 1 46 0 2 1692 204 333 78 48 chr3 145173963 145174130 -14425653 - MIRb SINE MIR -68 200 29 2 1692 581 114 15 75 chr3 145174896 145175029 -14424754 + Lx LINE L1 6530 6654 0 2 1692 461 276 51 67 chr3 145175697 145176036 -14423747 - RLTR15 LTR ERVK -15 344 45 2 1692 415 100 0 0 chr3 145176543 145176603 -14423180 - URR1B DNA MER1_type 0 225 166 2 1692 277 167 21 0 chr3 145176599 145176647 -14423136 - URR1B DNA MER1_type -176 49 1 2 1692 863 54 0 0 chr3 145178227 145178338 -14421445 - B1_Mus1 SINE Alu 0 148 38 2 1692 347 306 56 8 chr3 145178436 145178561 -14421222 + RSINE1 SINE B4 27 157 -8 2 1692 321 283 19 57 chr3 145179357 145179462 -14420321 - PB1D10 SINE Alu 0 117 17 2 1692 273 247 40 30 chr3 145180483 145180583 -14419200 - MTEb LTR MaLR 0 379 279 2 1692 405 58 0 0 chr3 145180592 145180644 -14419139 + (CA)n Simple_repeat Simple_repeat 2 53 0 2 1692 313 221 186 0 chr3 145180753 145180839 -14418944 - MTEb LTR MaLR -277 102 1 2 1692 204 326 105 50 chr3 145180855 145181049 -14418734 + L2a LINE L2 3173 3404 -22 2 1692 540 323 13 0 chr3 145182710 145182868 -14416915 + B3A SINE B2 1 160 -38 2 1692 324 48 0 0 chr3 145182872 145182914 -14416869 + (CA)n Simple_repeat Simple_repeat 1 42 0 2 1692 624 22 33 0 chr3 145183192 145183282 -14416501 + (TG)n Simple_repeat Simple_repeat 1 93 0 2 1692 287 270 0 26 chr3 145183284 145183360 -14416423 - tRNA-Ala-GCA tRNA tRNA -1 74 1 2 1692 342 246 0 0 chr3 145183303 145183364 -14416419 - ID4 SINE ID -20 63 3 2 1692 3294 100 40 2 chr3 145183884 145184038 -14415745 + Lx2 LINE L1 6530 6683 -314 2 1692 279 0 0 0 chr3 145184038 145184069 -14415714 + (CA)n Simple_repeat Simple_repeat 1 31 0 2 1692 3294 100 40 2 chr3 145184069 145184365 -14415418 + Lx2 LINE L1 6684 6997 0 2 1692 24 0 0 0 chr3 145185204 145185228 -14414555 + AT_rich Low_complexity Low_complexity 1 24 0 2 1692 368 273 64 0 chr3 145185947 145186057 -14413726 + PB1D7 SINE Alu 2 118 -2 2 1692 316 341 82 18 chr3 145186508 145186678 -14413105 - MLT1A0 LTR MaLR -184 181 1 3 1692 259 150 16 16 chr3 145187311 145187372 -14412411 + (TG)n Simple_repeat Simple_repeat 2 62 0 3 1692 732 234 153 20 chr3 145187426 145187674 -14412109 - B4A SINE B4 -11 281 1 3 1692 762 11 0 0 chr3 145187821 145187908 -14411875 + (TTC)n Simple_repeat Simple_repeat 2 88 0 3 1692 191 229 57 0 chr3 145187938 145187973 -14411810 + L2b LINE L2 3313 3349 -26 3 1692 288 0 0 0 chr3 145189263 145189295 -14410488 + (CA)n Simple_repeat Simple_repeat 1 32 0 3 1692 413 303 65 16 chr3 145189650 145189774 -14410009 + B4A SINE B4 5 134 -158 3 1692 242 187 40 0 chr3 145190238 145190313 -14409470 + (TG)n Simple_repeat Simple_repeat 1 78 0 3 1692 342 0 0 0 chr3 145190765 145190803 -14408980 + (TC)n Simple_repeat Simple_repeat 1 38 0 3 1692 246 128 0 0 chr3 145190979 145191018 -14408765 + (T)n Simple_repeat Simple_repeat 1 39 0 3 1692 242 175 400 0 chr3 145191054 145191134 -14408649 - PB1D10 SINE Alu -5 112 1 3 1692 289 329 79 20 chr3 145191563 145191715 -14408068 - L1MC LINE L1 -2096 5786 5626 3 1692 637 174 37 0 chr3 145191888 145191997 -14407786 - B1_Mur4 SINE Alu -36 114 2 3 1692 450 220 31 92 chr3 145191997 145192023 -14407760 - MT2B LTR ERVL -446 155 138 3 1692 330 377 29 14 chr3 145192006 145192146 -14407637 - ORR1E LTR MaLR -210 149 8 3 1692 1487 292 70 10 chr3 145192182 145192767 -14407016 - L1MB3 LINE L1 -12 6171 5552 3 1692 392 175 95 17 chr3 145192808 145192924 -14406859 - Lx9 LINE L1 -1 7643 7519 3 1692 210 128 0 0 chr3 145192932 145192971 -14406812 + (TG)n Simple_repeat Simple_repeat 2 40 0 3 1692 537 58 0 0 chr3 145192974 145193043 -14406740 + (CATATA)n Simple_repeat Simple_repeat 4 72 0 3 1692 447 158 88 10 chr3 145193054 145193156 -14406627 + Lx9 LINE L1 7383 7492 -152 3 1692 292 77 39 0 chr3 145193180 145193232 -14406551 + (TA)n Simple_repeat Simple_repeat 1 54 0 3 1692 1690 215 53 19 chr3 145193292 145193704 -14406079 - Lx9 LINE L1 -121 7523 7098 3 1692 1268 186 0 154 chr3 145193696 145194026 -14405757 + Lx9 LINE L1 6792 7070 -574 3 1692 616 206 38 15 chr3 145194038 145194171 -14405612 - B1F SINE Alu -11 138 3 3 1692 320 250 31 0 chr3 145194213 145194277 -14405506 - ID4_ SINE ID -17 66 1 3 1692 968 277 161 31 chr3 145194286 145194969 -14404814 - L1M4 LINE L1 -698 5984 5197 3 1692 577 219 29 0 chr3 145195045 145195150 -14404633 - B1F1 SINE Alu -41 108 1 3 1692 893 159 399 72 chr3 145195268 145195505 -14404278 + ORR1B1 LTR MaLR 1 349 -45 3 1692 1185 68 0 26 chr3 145195505 145195656 -14404127 + B1_Mus2 SINE Alu 1 147 0 3 1692 893 159 399 72 chr3 145195656 145195709 -14404074 + ORR1B1 LTR MaLR 350 386 -8 3 1692 738 206 29 97 chr3 145195731 145195983 -14403800 + MTEa LTR MaLR 113 371 -8 3 1692 234 402 81 66 chr3 145196220 145196417 -14403366 - B4 SINE B4 -9 283 84 3 1692 757 238 6 30 chr3 145196417 145196586 -14403197 - B3A SINE B2 -33 165 1 3 1692 363 251 217 13 chr3 145196597 145196823 -14402960 - L1M4 LINE L1 -4660 1986 1715 3 1692 433 252 48 0 chr3 145196871 145196974 -14402809 - B1F SINE Alu -4 145 38 3 1692 413 309 141 7 chr3 145196997 145197302 -14402481 - L1M4 LINE L1 -4995 1651 1306 3 1692 1154 300 95 16 chr3 145197371 145197981 -14401802 - L1M4 LINE L1 -5562 980 323 3 1692 260 299 103 9 chr3 145198234 145198447 -14401336 + Charlie1a DNA MER1_type 1175 1407 -48 3 1692 226 315 68 14 chr3 145198472 145198546 -14401237 - ID4_ SINE ID -5 78 1 3 1692 605 206 9 0 chr3 145198642 145198749 -14401034 + PB1D10 SINE Alu 1 108 -9 3 1692 354 136 24 12 chr3 145199449 145199531 -14400252 + (TA)n Simple_repeat Simple_repeat 1 83 0 3 1692 1146 22 0 0 chr3 145200326 145200463 -14399320 + B1_Mus1 SINE Alu 7 143 -5 3 1692 2958 107 23 12 chr3 145202538 145202965 -14396818 + Lx2 LINE L1 6566 6997 0 3 1692 196 287 214 77 chr3 145203086 145203464 -14396319 - L2 LINE L2 -2537 882 453 3 1692 2709 207 6 20 chr3 145203937 145204479 -14395304 - RMER5 LTR ERV1 0 534 1 3 1692 883 252 27 41 chr3 145204831 145205050 -14394733 - B3 SINE B2 0 216 1 3 1692 343 0 43 0 chr3 145206057 145206104 -14393679 + (TG)n Simple_repeat Simple_repeat 2 50 0 3 1692 415 188 174 34 chr3 145206105 145206254 -14393529 - Charlie6 DNA MER1_type -684 2816 2647 3 1692 240 254 16 16 chr3 145206533 145206597 -14393186 - ID4 SINE ID -5 78 15 3 1692 330 194 0 0 chr3 145206750 145206817 -14392966 + (ATG)n Simple_repeat Simple_repeat 1 67 0 3 1692 722 221 24 6 chr3 145206834 145207002 -14392781 - HAL1-2a_MD LINE L1 -509 2515 2345 3 1692 870 204 0 0 chr3 145207004 145207388 -14392395 + (TGG)n Simple_repeat Simple_repeat 1 384 0 3 1692 729 185 6 11 chr3 145208384 145208564 -14391219 + (TA)n Simple_repeat Simple_repeat 2 180 0 3 1692 605 196 0 71 chr3 145208644 145208770 -14391013 - B1_Mur2 SINE Alu 0 149 33 3 1692 243 285 94 128 chr3 145208654 145208803 -14390980 - B4 SINE B4 -72 220 77 3 1692 292 164 0 76 chr3 145208834 145208900 -14390883 - B3 SINE B2 -6 210 150 3 1692 669 330 5 21 chr3 145208930 145209119 -14390664 - B3 SINE B2 -30 186 1 3 1692 600 283 39 44 chr3 145209148 145209288 -14390495 - B3A SINE B2 -18 180 41 3 1692 2353 85 53 17 chr3 145209288 145209645 -14390138 - Lx2A1 LINE L1 -3 7005 6636 3 1692 600 283 39 44 chr3 145209645 145209685 -14390098 - B3A SINE B2 -158 40 1 3 1692 2373 52 29 3 chr3 145210198 145210509 -14389274 - ORR1A2 LTR MaLR -8 319 1 3 1692 300 315 45 0 chr3 145210810 145210921 -14388862 + PB1D10 SINE Alu 1 116 -1 3 1692 401 296 69 9 chr3 145212097 145212213 -14387570 + RSINE1 SINE B4 2 124 -41 3 1692 558 43 0 0 chr3 145212216 145212285 -14387498 + (CAGA)n Simple_repeat Simple_repeat 4 72 0 3 1692 714 276 69 22 chr3 145212437 145212742 -14387041 - MTE2a LTR MaLR 0 379 6 3 1692 329 288 0 12 chr3 145212746 145212827 -14386956 + PB1D10 SINE Alu 5 84 -33 3 1692 244 338 14 0 chr3 145212925 145212996 -14386787 + ID4_ SINE ID 1 72 -11 3 1692 593 148 37 7 chr3 145213145 145213281 -14386502 + CT-rich Low_complexity Low_complexity 3 142 0 3 1692 469 305 48 71 chr3 145215300 145215442 -14384341 + L1MB4 LINE L1 5047 5186 -954 3 1692 1055 39 110 0 chr3 145215442 145215569 -14384214 + B1_Mus2 SINE Alu 1 141 -6 3 1692 288 0 0 0 chr3 145215571 145215603 -14384180 + (CAA)n Simple_repeat Simple_repeat 2 33 0 3 1692 469 304 32 37 chr3 145215603 145215863 -14383920 + L1MB4 LINE L1 5187 5450 -733 3 1692 234 294 18 0 chr3 145216037 145216119 -14383664 - PB1D7 SINE Alu -9 140 56 3 1692 346 286 29 48 chr3 145216116 145216219 -14383564 - B1F1 SINE Alu -44 105 5 3 1692 246 62 0 0 chr3 145216220 145216252 -14383531 + (TGG)n Simple_repeat Simple_repeat 2 33 0 3 1692 875 299 188 12 chr3 145216401 145216831 -14382952 + MER21B LTR ERV1 278 783 -80 3 1692 355 294 33 46 chr3 145216863 145217016 -14382767 + L1MB4 LINE L1 5473 5623 -557 3 1692 512 281 164 4 chr3 145217028 145217278 -14382505 + L1MB4 LINE L1 5662 5951 -229 3 1692 1020 80 0 0 chr3 145217357 145217495 -14382288 + B1_Mus1 SINE Alu 11 148 0 3 1692 279 0 0 0 chr3 145217495 145217526 -14382257 + (A)n Simple_repeat Simple_repeat 1 31 0 3 1692 243 267 93 0 chr3 145217526 145217612 -14382171 + L1MB7 LINE L1 6032 6125 -59 3 1692 277 62 0 40 chr3 145217884 145217934 -14381849 + (GGGA)n Simple_repeat Simple_repeat 1 48 0 3 1692 535 312 43 37 chr3 145218021 145218184 -14381599 - ID_B1 SINE B4 -9 215 52 3 1692 275 340 88 7 chr3 145218241 145218389 -14381394 + MIR SINE MIR 77 236 -26 3 1692 258 312 29 59 chr3 145218497 145218599 -14381184 - MER63B DNA AcHobo -41 395 297 3 1692 939 219 15 15 chr3 145218756 145218951 -14380832 - B3 SINE B2 -11 205 11 3 1692 5447 115 75 19 chr3 145219614 145220521 -14379262 - Lx2 LINE L1 -69 6928 5971 3 1692 576 208 0 0 chr3 145220698 145220799 -14378984 - B3 SINE B2 -114 102 2 3 1692 501 17 0 0 chr3 145220944 145221002 -14378781 + (TC)n Simple_repeat Simple_repeat 1 58 0 3 1692 303 268 106 48 chr3 145221359 145221567 -14378216 - L1MEg1 LINE L1 -6013 222 3 3 1692 387 0 0 0 chr3 145221582 145221625 -14378158 + (TAAA)n Simple_repeat Simple_repeat 4 46 0 3 1692 399 277 94 80 chr3 145221949 145222111 -14377672 - B3 SINE B2 0 216 57 3 1692 219 36 0 0 chr3 145222111 145222139 -14377644 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 3 1692 399 277 94 80 chr3 145222139 145222188 -14377595 - B3 SINE B2 -160 56 2 3 1692 457 270 57 32 chr3 145222685 145222842 -14376941 - RSINE1 SINE B4 -2 163 3 3 1692 925 287 34 0 chr3 145223751 145224019 -14375764 + B4A SINE B4 2 278 -14 3 1692 555 211 9 9 chr3 145224322 145224437 -14375346 - PB1D9 SINE Alu 0 120 6 3 1692 229 230 10 121 chr3 145224437 145224536 -14375247 + Lx8 LINE L1 7136 7223 -250 3 1692 426 39 0 0 chr3 145224542 145224594 -14375189 + (TG)n Simple_repeat Simple_repeat 2 53 0 3 1692 1051 212 18 4 chr3 145224594 145224821 -14374962 + ORR1D2 LTR MaLR 141 370 0 3 1692 1180 68 159 0 chr3 145225167 145225330 -14374453 - B2_Mm1a SINE B2 -3 190 2 3 1692 520 249 79 44 chr3 145225342 145225594 -14374189 - MER33 DNA MER1_type -8 316 56 3 1692 595 231 8 0 chr3 145225542 145225663 -14374120 - B1_Mus1 SINE Alu -25 123 2 3 1692 247 303 0 0 chr3 145225710 145225776 -14374007 - MER33 DNA MER1_type -224 100 35 3 1692 568 235 45 39 chr3 145225909 145226064 -14373719 + MTE2b LTR MaLR 187 342 -37 3 1692 1510 172 33 81 chr3 145226084 145226444 -14373339 - ORR1C1 LTR MaLR -35 343 1 3 1692 726 249 0 12 chr3 145226454 145226617 -14373166 - MT2A LTR ERVL -131 402 242 3 1692 3122 169 55 39 chr3 145226624 145226961 -14372822 + RMER6D LTR ERVK 43 375 -345 3 1692 234 0 0 0 chr3 145226961 145226987 -14372796 + (TG)n Simple_repeat Simple_repeat 2 27 0 3 1692 3122 169 55 39 chr3 145226987 145227316 -14372467 + RMER6D LTR ERVK 376 719 -1 3 1692 449 194 8 120 chr3 145227322 145227439 -14372344 + B1_Mur4 SINE Alu 41 144 -6 3 1692 546 79 0 0 chr3 145227439 145227515 -14372268 + (GA)n Simple_repeat Simple_repeat 1 76 0 3 1692 528 16 0 0 chr3 145227518 145227579 -14372204 + (GGAA)n Simple_repeat Simple_repeat 4 64 0 3 211 905 199 45 72 chr3 145227654 145227876 -14371907 - B3 SINE B2 0 216 1 4 1693 300 207 0 0 chr3 145227878 145227936 -14371847 - MT2A LTR ERVL -475 58 1 3 1693 184 149 0 41 chr3 145228279 145228328 -14371455 + (TA)n Simple_repeat Simple_repeat 1 47 0 4 1693 546 323 81 48 chr3 145228336 145228915 -14370868 + L1M2 LINE L1 2275 2872 -2975 4 1693 550 156 13 141 chr3 145228928 145229077 -14370706 - ORR1D1 LTR MaLR -244 130 1 4 1693 435 238 96 29 chr3 145229078 145229182 -14370601 + RSINE1 SINE B4 32 142 -23 4 1693 465 134 10 30 chr3 145229190 145229290 -14370493 + CT-rich Low_complexity Low_complexity 3 100 0 4 1693 2739 126 49 25 chr3 145229338 145229429 -14370354 + Lx4A LINE L1 3631 3742 -2135 4 1693 189 74 0 0 chr3 145229429 145229456 -14370327 + (CA)n Simple_repeat Simple_repeat 2 28 0 4 1693 2739 126 49 25 chr3 145229456 145229854 -14369929 + Lx4A LINE L1 3743 4131 -1746 4 1693 2570 52 3 0 chr3 145229855 145230198 -14369585 - IAPLTR4 LTR ERVK -1 344 1 4 1693 4898 172 210 120 chr3 145230198 145230271 -14369512 + Lx4A LINE L1 4138 4210 -1676 4 1693 3753 65 73 0 chr3 145230271 145230748 -14369035 - RLTR1B LTR ERV1 0 512 1 4 1693 4898 172 210 120 chr3 145230748 145231308 -14368475 + Lx4A LINE L1 4211 4672 -1214 4 1693 185 0 40 0 chr3 145231308 145231333 -14368450 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 4 1693 4898 172 210 120 chr3 145231333 145231634 -14368149 + Lx4A LINE L1 4673 5267 -619 4 1693 2625 80 3 0 chr3 145231634 145231960 -14367823 + ORR1A2 LTR MaLR 1 327 0 4 1693 10148 129 64 88 chr3 145231961 145233680 -14366103 + ORR1A2-int LTR MaLR 2 1683 -280 4 1693 636 14 0 0 chr3 145233680 145233753 -14366030 + (GAAA)n Simple_repeat Simple_repeat 1 73 0 4 1693 228 35 0 0 chr3 145233762 145233791 -14365992 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 4 1693 10148 129 64 88 chr3 145233791 145234071 -14365712 + ORR1A2-int LTR MaLR 1684 1963 0 4 1693 2509 89 6 0 chr3 145234071 145234396 -14365387 + ORR1A2 LTR MaLR 1 327 0 4 1693 4898 151 90 45 chr3 145234396 145235492 -14364291 + Lx4A LINE L1 5268 6324 -734 4 1693 2490 159 31 47 chr3 145235492 145236005 -14363778 + Lx4A LINE L1 6539 7043 -15 4 1693 195 42 0 0 chr3 145236005 145236029 -14363754 + (CAA)n Simple_repeat Simple_repeat 1 24 0 4 1693 386 252 59 107 chr3 145236094 145236263 -14363520 + RSINE1 SINE B4 5 165 0 4 1693 549 265 17 139 chr3 145236298 145236506 -14363277 + L1MA4 LINE L1 5366 5537 -763 4 1693 3890 87 56 7 chr3 145236506 145237063 -14362720 + MT2B2 LTR ERVL 1 584 0 4 1693 549 279 21 140 chr3 145237063 145237194 -14362589 + L1MA4 LINE L1 5538 5672 -484 4 1693 636 129 0 0 chr3 145237231 145237332 -14362451 + B1_Mus2 SINE Alu 43 143 -4 4 1693 324 0 0 0 chr3 145237332 145237368 -14362415 + (TAA)n Simple_repeat Simple_repeat 1 36 0 4 1693 604 191 46 66 chr3 145237391 145237542 -14362241 + B1_Mur3 SINE Alu 1 148 -1 4 1693 249 139 0 0 chr3 145237549 145237592 -14362191 + (GGGA)n Simple_repeat Simple_repeat 4 46 0 4 1693 552 265 53 6 chr3 145237592 145237763 -14362020 + L1MA4 LINE L1 5675 5853 -447 4 1693 467 235 59 0 chr3 145237763 145237882 -14361901 + RMER15 LTR ERVL 428 553 -22 4 1693 1233 41 7 0 chr3 145238040 145238186 -14361597 + B1_Mm SINE Alu 1 147 0 4 1693 330 91 0 0 chr3 145238186 145238241 -14361542 + (A)n Simple_repeat Simple_repeat 1 55 0 4 1693 526 252 33 7 chr3 145238242 145238394 -14361389 - MLT1B LTR MaLR -234 156 1 4 1693 543 151 26 39 chr3 145238516 145238633 -14361150 - B1_Mur2 SINE Alu -1 119 19 4 1693 857 167 130 43 chr3 145238678 145238885 -14360898 + URR1B DNA MER1_type 1 225 0 4 1693 372 319 6 6 chr3 145239600 145239780 -14360003 + GA-rich Low_complexity Low_complexity 1 180 0 4 1693 381 261 90 48 chr3 145240634 145240699 -14359084 + ID SINE ID 11 81 -143 4 1693 613 78 0 53 chr3 145240699 145240794 -14358989 + B1_Mm SINE Alu 2 91 -56 4 1693 406 157 126 10 chr3 145242107 145242210 -14357573 + PB1D9 SINE Alu 5 119 -1 4 1693 539 232 184 11 chr3 145242227 145242406 -14357377 + B3 SINE B2 5 214 -2 4 1693 409 332 74 28 chr3 145243800 145244085 -14355698 - L1M5 LINE L1 -1098 5048 4751 4 1693 242 293 27 0 chr3 145244310 145244385 -14355398 + MER2B DNA MER2_type 211 287 -49 4 1693 907 174 180 21 chr3 145244617 145244811 -14354972 + URR1B DNA MER1_type 1 225 0 4 1693 575 228 67 183 chr3 145246241 145246585 -14353198 - Lx7 LINE L1 -583 7113 6810 4 1693 180 0 0 0 chr3 145246818 145246838 -14352945 + (GTTTG)n Simple_repeat Simple_repeat 2 21 0 4 1693 7084 61 8 5 chr3 145247743 145248628 -14351155 - L1Md_F2 LINE L1 0 6582 5695 4 1693 331 245 36 85 chr3 145249250 145249415 -14350368 - ORR1E LTR MaLR -150 209 53 4 1693 624 238 95 0 chr3 145250027 145250174 -14349609 - B3A SINE B2 -37 161 1 4 1693 783 174 7 28 chr3 145250470 145250612 -14349171 + B1_Mus2 SINE Alu 1 139 -8 4 1693 438 256 71 16 chr3 145250645 145250772 -14349011 + RSINE1 SINE B4 3 136 -29 4 1693 235 264 61 76 chr3 145250959 145251128 -14348655 - B4A SINE B4 0 292 141 4 1693 7788 58 24 1 chr3 145251229 145252593 -14347190 - L1_Mus1 LINE L1 0 6567 5193 4 1693 276 152 0 0 chr3 145253653 145253719 -14346064 + (TG)n Simple_repeat Simple_repeat 2 67 0 4 1693 380 194 37 93 chr3 145254973 145255081 -14344702 + B1_Mur1 SINE Alu 46 147 -2 4 1693 3103 57 0 28 chr3 145255851 145256251 -14343532 + L1_Mus1 LINE L1 6179 6567 0 4 1693 417 329 67 0 chr3 145257708 145257857 -14341926 - RSINE1 SINE B4 -1 164 6 4 1693 230 268 46 0 chr3 145258041 145258127 -14341656 - MIRc SINE MIR -120 148 50 4 1693 1102 85 37 0 chr3 145259319 145259483 -14340300 - B2_Mm2 SINE B2 -25 170 1 4 1693 8356 44 0 1 chr3 145259501 145260550 -14339233 - L1Md_F2 LINE L1 0 6582 5535 4 1693 400 322 142 0 chr3 145260548 145260753 -14339030 + Lx8 LINE L1 7072 7305 -168 4 1693 729 240 57 24 chr3 145262141 145262350 -14337433 - B3 SINE B2 0 216 1 4 1693 610 187 61 55 chr3 145262910 145263074 -14336709 - B3A SINE B2 -1 197 33 4 1693 220 266 48 48 chr3 145263243 145263326 -14336457 - PB1D10 SINE Alu -47 102 20 4 1693 252 0 0 0 chr3 145265370 145265398 -14334385 + (CA)n Simple_repeat Simple_repeat 2 29 0 4 1693 392 288 101 35 chr3 145266122 145266320 -14333463 - B3 SINE B2 -1 215 5 4 1693 1785 148 26 67 chr3 145267780 145268121 -14331662 - ORR1A2 LTR MaLR 0 327 1 4 1693 310 240 324 41 chr3 145268408 145268599 -14331184 + B4 SINE B4 39 283 -9 4 1693 187 319 56 48 chr3 145268760 145268885 -14330898 - MIR SINE MIR -132 130 5 4 1693 362 316 0 17 chr3 145268944 145269060 -14330723 - Lx8 LINE L1 -540 6933 6820 4 1693 983 46 33 54 chr3 145269085 145269269 -14330514 + (TTTCC)n Simple_repeat Simple_repeat 1 180 0 4 1693 302 260 30 40 chr3 145269269 145269369 -14330414 - ID_B1 SINE B4 -17 207 109 4 1693 1210 104 16 37 chr3 145270791 145270981 -14328802 + B2_Mm2 SINE B2 1 186 -9 4 1693 727 125 9 0 chr3 145271750 145271862 -14327921 - B1_Mur4 SINE Alu -20 130 18 4 1693 328 280 103 0 chr3 145271770 145271877 -14327906 - B4 SINE B4 -94 198 81 4 1693 733 272 32 21 chr3 145272099 145272287 -14327496 + B3 SINE B2 16 205 -11 4 1693 280 219 676 29 chr3 145272372 145272474 -14327309 + Lx8 LINE L1 7176 7336 -137 4 1693 3117 57 8 5 chr3 145272474 145272863 -14326920 - RLTR10 LTR ERVK 0 390 1 4 1693 280 271 94 70 chr3 145272863 145272989 -14326794 + Lx8 LINE L1 7337 7473 0 4 1693 218 329 78 81 chr3 145274919 145275177 -14324606 - L3 LINE CR1 -19 4470 4214 4 1693 212 343 0 0 chr3 145275331 145275398 -14324385 - L3 LINE CR1 -525 3964 3898 4 1693 189 0 0 0 chr3 145277124 145277145 -14322638 + (TCTG)n Simple_repeat Simple_repeat 3 23 0 4 1693 28 0 0 0 chr3 145277717 145277745 -14322038 + AT_rich Low_complexity Low_complexity 1 28 0 4 1693 377 169 17 0 chr3 145278339 145278409 -14321374 + ID4_ SINE ID 12 82 -70 4 1693 342 291 26 26 chr3 145279231 145279344 -14320439 + LTR48B LTR ERV1 169 281 -363 4 1693 424 239 71 35 chr3 145279620 145279733 -14320050 - PB1D10 SINE Alu 0 117 1 4 1693 402 108 0 0 chr3 145279836 145279910 -14319873 + (CA)n Simple_repeat Simple_repeat 2 75 0 4 1693 437 306 75 0 chr3 145280276 145280410 -14319373 + B1F SINE Alu 2 145 -4 4 1693 21 0 0 0 chr3 145280471 145280492 -14319291 + AT_rich Low_complexity Low_complexity 1 21 0 4 1693 939 146 0 0 chr3 145280619 145280756 -14319027 - B1_Mur4 SINE Alu -13 137 1 4 1693 359 248 124 33 chr3 145280758 145280879 -14318904 - ID_B1 SINE B4 -1 223 92 4 1693 350 259 12 0 chr3 145281174 145281255 -14318528 - ID4_ SINE ID 0 83 2 4 1693 188 347 117 43 chr3 145282125 145282381 -14317402 + L2a LINE L2 2578 2852 -567 4 1693 829 241 37 5 chr3 145282694 145282882 -14316901 - B3 SINE B2 -11 205 12 4 1693 648 0 0 0 chr3 145282905 145282977 -14316806 + (TC)n Simple_repeat Simple_repeat 1 72 0 4 1693 571 308 143 54 chr3 145283710 145284060 -14315723 - L1MEd LINE L1 -5487 632 252 4 1693 336 102 0 0 chr3 145284149 145284198 -14315585 + (TG)n Simple_repeat Simple_repeat 1 49 0 4 1693 279 309 94 31 chr3 145284739 145284866 -14314917 + L2a LINE L2 3286 3420 -6 4 1693 382 364 111 7 chr3 145285046 145285190 -14314593 + RSINE1 SINE B4 2 160 -5 4 1693 323 240 13 13 chr3 145285726 145285802 -14313981 + ID4_ SINE ID 4 79 -4 4 1693 200 222 74 0 chr3 145286490 145286544 -14313239 + L2 LINE L2 548 605 -2814 4 1693 1136 147 110 0 chr3 145287125 145287316 -14312467 + B3 SINE B2 5 216 0 4 1693 192 77 0 0 chr3 145287390 145287416 -14312367 + (AGGGGG)n Simple_repeat Simple_repeat 2 27 0 4 1693 274 329 33 40 chr3 145287582 145287734 -14312049 + MIRb SINE MIR 43 193 -75 4 1693 342 0 0 0 chr3 145287790 145287828 -14311955 + (CA)n Simple_repeat Simple_repeat 2 39 0 4 1693 204 67 0 0 chr3 145288258 145288288 -14311495 + (TG)n Simple_repeat Simple_repeat 2 31 0 4 1693 256 281 48 32 chr3 145288471 145288597 -14311186 + MIR SINE MIR 33 147 -129 4 1693 507 317 7 27 chr3 145289152 145289298 -14310485 - ID_B1 SINE B4 0 224 82 4 1693 1373 51 73 6 chr3 145289613 145289791 -14309992 - B2_Mm1a SINE B2 -2 191 2 4 1693 250 246 0 0 chr3 145290044 145290113 -14309670 + T-rich Low_complexity Low_complexity 1 69 0 4 1693 1156 75 0 7 chr3 145290114 145290262 -14309521 - B1_Mus1 SINE Alu -1 147 1 4 1693 560 182 0 8 chr3 145290495 145290628 -14309155 + (TA)n Simple_repeat Simple_repeat 1 132 0 5 1693 586 279 47 16 chr3 145290628 145290821 -14308962 - B3 SINE B2 -13 203 5 5 1693 238 260 0 88 chr3 145291891 145291971 -14307812 + B4A SINE B4 220 292 0 5 1693 375 23 0 0 chr3 145292077 145292121 -14307662 + (CA)n Simple_repeat Simple_repeat 1 44 0 5 1693 306 0 0 0 chr3 145292121 145292154 -14307629 + (GA)n Simple_repeat Simple_repeat 2 35 0 5 1693 558 276 78 28 chr3 145292241 145292420 -14307363 + B3A SINE B2 11 198 0 5 1693 228 220 0 0 chr3 145292434 145292484 -14307299 + L1M3 LINE L1 5859 5908 -272 5 1693 1897 140 69 43 chr3 145292734 145293084 -14306699 - ORR1C1 LTR MaLR -19 359 1 5 1693 28 48 0 0 chr3 145293779 145293821 -14305962 + AT_rich Low_complexity Low_complexity 1 42 0 5 1693 183 146 0 0 chr3 145293831 145293872 -14305911 + (TCTCTG)n Simple_repeat Simple_repeat 2 42 0 5 1693 279 270 48 131 chr3 145293873 145293902 -14305881 - B4 SINE B4 -148 144 118 5 1693 228 35 0 0 chr3 145293902 145293931 -14305852 + (TG)n Simple_repeat Simple_repeat 1 29 0 5 1693 428 166 121 82 chr3 145293931 145294046 -14305737 - RSINE1 SINE B4 -175 117 12 5 1693 1263 120 11 0 chr3 145294381 145294565 -14305218 + B2_Mm1t SINE B2 2 187 -6 5 1693 585 232 228 16 chr3 145294940 145295124 -14304659 - ID_B1 SINE B4 -1 223 1 5 1693 536 156 8 0 chr3 145296699 145296827 -14302956 + GA-rich Low_complexity Low_complexity 1 129 0 5 1693 402 266 45 30 chr3 145298255 145298387 -14301396 + B1F SINE Alu 12 145 -4 5 1693 731 277 19 68 chr3 145298389 145298594 -14301189 + B3A SINE B2 1 195 -3 5 1693 263 254 15 15 chr3 145298633 145298701 -14301082 + ID4_ SINE ID 7 74 -9 5 1693 629 290 77 118 chr3 145298757 145298959 -14300824 + MLT1H2 LTR MaLR 29 221 -268 5 1693 777 207 0 28 chr3 145298959 145299103 -14300680 + B1_Mur1 SINE Alu 2 141 -8 5 1693 629 290 77 118 chr3 145299103 145299341 -14300442 + MLT1H2 LTR MaLR 222 451 -38 5 1693 229 333 27 92 chr3 145299987 145300172 -14299611 + L3 LINE CR1 4193 4365 -124 5 1693 645 335 42 19 chr3 145300243 145300459 -14299324 - B4 SINE B4 -43 249 29 5 1693 408 155 0 0 chr3 145302525 145302596 -14297187 + CT-rich Low_complexity Low_complexity 2 72 0 5 1693 733 245 107 5 chr3 145302597 145302794 -14296989 - ID_B1 SINE B4 -6 218 2 5 1693 620 274 7 0 chr3 145303883 145304018 -14295765 - B1F1 SINE Alu -10 139 4 5 1693 282 116 0 0 chr3 145304021 145304064 -14295719 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 5 1693 513 110 0 0 chr3 145304069 145304142 -14295641 + Lx3C LINE L1 6542 6614 -362 5 1693 283 217 101 71 chr3 145304142 145304241 -14295542 - MLT1L LTR MaLR -7 665 516 5 1693 249 135 0 0 chr3 145304820 145304872 -14294911 + (TG)n Simple_repeat Simple_repeat 1 52 0 5 1693 225 0 0 0 chr3 145305845 145305870 -14293913 + (TTTTTG)n Simple_repeat Simple_repeat 2 26 0 5 1693 377 295 0 0 chr3 145305926 145306031 -14293752 - B3A SINE B2 -73 125 21 5 1693 183 200 89 0 chr3 145306710 145306755 -14293028 - L2 LINE L2 -681 2738 2690 5 1693 621 221 31 39 chr3 145307303 145307484 -14292299 + B3 SINE B2 1 189 -6 5 1693 234 62 0 0 chr3 145308839 145308871 -14290912 + (TTTTA)n Simple_repeat Simple_repeat 2 33 0 5 1693 235 264 59 102 chr3 145309756 145309874 -14289909 + L2a LINE L2 3312 3424 -2 5 1693 27 49 0 0 chr3 145309944 145309985 -14289798 + AT_rich Low_complexity Low_complexity 1 41 0 5 1693 180 0 0 0 chr3 145310984 145311004 -14288779 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 5 1693 381 22 0 0 chr3 145314029 145314075 -14285708 + (TG)n Simple_repeat Simple_repeat 2 47 0 5 1693 676 185 192 0 chr3 145315821 145315967 -14283816 - MER5A DNA MER1_type -1 188 15 5 1693 279 0 0 0 chr3 145316985 145317016 -14282767 + (TTTTA)n Simple_repeat Simple_repeat 2 32 0 5 1693 562 231 14 63 chr3 145317016 145317149 -14282634 - B1_Mur3 SINE Alu -9 140 13 5 1693 638 31 394 10 chr3 145317208 145317307 -14282476 + B1_Mus2 SINE Alu 3 139 -8 5 1693 273 219 0 0 chr3 145318475 145318548 -14281235 + (TA)n Simple_repeat Simple_repeat 2 74 0 5 1693 309 297 48 19 chr3 145318549 145318652 -14281131 + L1MCa LINE L1 1891 1996 -4512 5 1693 453 205 0 0 chr3 145318895 145318978 -14280805 + B4A SINE B4 6 88 -204 5 1693 714 266 46 36 chr3 145318991 145319186 -14280597 + B3 SINE B2 7 203 -13 5 1693 635 238 0 8 chr3 145319251 145319374 -14280409 + B4A SINE B4 111 232 -60 5 1693 255 304 15 164 chr3 145319339 145319473 -14280310 + MT2B LTR ERVL 152 265 -336 5 1693 510 250 10 0 chr3 145319395 145319491 -14280292 + B1_Mur1 SINE Alu 38 134 -15 5 1693 21 0 0 0 chr3 145319499 145319520 -14280263 + AT_rich Low_complexity Low_complexity 1 21 0 5 1693 455 119 0 21 chr3 145319520 145319614 -14280169 + Lx LINE L1 6563 6654 0 5 1693 301 273 0 0 chr3 145319618 145319673 -14280110 + B4A SINE B4 220 274 -18 5 1693 894 138 0 0 chr3 145319679 145319853 -14279930 + (CA)n Simple_repeat Simple_repeat 1 174 0 5 1693 210 128 0 0 chr3 145319864 145319903 -14279880 + (CA)n Simple_repeat Simple_repeat 2 40 0 5 1693 210 292 68 14 chr3 145320571 145320644 -14279139 + MIRb SINE MIR 192 268 0 5 1693 205 191 32 0 chr3 145321513 145321542 -14278241 + polypurine Low_complexity Low_complexity 4 33 0 5 1693 315 0 0 0 chr3 145321542 145321577 -14278206 + (CA)n Simple_repeat Simple_repeat 2 36 0 5 1693 205 191 32 0 chr3 145321577 145321610 -14278173 + polypurine Low_complexity Low_complexity 34 67 0 5 1693 312 27 0 0 chr3 145321925 145321962 -14277821 + (A)n Simple_repeat Simple_repeat 1 37 0 5 1693 407 328 117 64 chr3 145322183 145322447 -14277336 + B4A SINE B4 1 278 -14 5 1693 236 250 0 30 chr3 145322467 145322533 -14277250 + (CATA)n Simple_repeat Simple_repeat 1 64 0 5 1693 209 108 27 0 chr3 145322537 145322574 -14277209 + (TAGA)n Simple_repeat Simple_repeat 1 38 0 5 1693 366 23 0 0 chr3 145322602 145322645 -14277138 + (TA)n Simple_repeat Simple_repeat 2 44 0 5 1693 477 266 31 49 chr3 145323044 145323206 -14276577 + RSINE1 SINE B4 7 165 0 5 1693 345 199 7 37 chr3 145323208 145323344 -14276439 + (CATATA)n Simple_repeat Simple_repeat 5 136 0 5 1693 474 75 0 36 chr3 145323365 145323448 -14276335 + (CA)n Simple_repeat Simple_repeat 1 80 0 5 1693 711 223 0 0 chr3 145323582 145323712 -14276071 + B1_Mus1 SINE Alu 19 148 0 5 1693 236 238 0 100 chr3 145323747 145323817 -14275966 + B3 SINE B2 154 216 0 5 1693 5697 33 6 0 chr3 145323832 145324493 -14275290 - L1Md_F2 LINE L1 -15 6567 5903 5 1693 963 216 28 5 chr3 145324679 145324893 -14274890 - ID_B1 SINE B4 -4 220 2 5 1693 555 133 0 0 chr3 145325400 145325505 -14274278 + (GA)n Simple_repeat Simple_repeat 1 105 0 5 1693 859 257 14 18 chr3 145327506 145327728 -14272055 - ID_B1 SINE B4 -2 222 2 5 1693 566 243 14 14 chr3 145327788 145327934 -14271849 - B1_Mur3 SINE Alu -3 146 1 5 1693 329 287 67 28 chr3 145327935 145327976 -14271807 - L1MEc LINE L1 -3169 3150 3105 5 1693 2724 43 3 36 chr3 145327976 145328335 -14271448 + L1_Mus2 LINE L1 6220 6566 0 5 1693 329 287 67 28 chr3 145328335 145328547 -14271236 - L1MEc LINE L1 -3215 3104 2888 5 1693 655 120 8 16 chr3 145328987 145329114 -14270669 + (TCTA)n Simple_repeat Simple_repeat 1 126 0 5 1693 586 276 60 0 chr3 145329114 145329248 -14270535 - ID_B1 SINE B4 -2 222 81 5 1693 1165 267 123 17 chr3 145329453 145329875 -14269908 + MLT2B4 LTR ERVL 8 474 -82 5 1693 351 336 85 96 chr3 145330070 145330187 -14269596 - L1MEc LINE L1 -3897 2503 2377 5 1693 415 98 0 128 chr3 145330187 145330281 -14269502 - L1Md_F3 LINE L1 0 6584 6503 5 1693 351 336 85 96 chr3 145330281 145330456 -14269327 - L1MEc LINE L1 -4024 2376 2215 5 1693 353 286 91 70 chr3 145330561 145330802 -14268981 - L1MEc LINE L1 -4377 2023 1778 5 1693 234 283 98 81 chr3 145330807 145330980 -14268803 - L1MC4a LINE L1 -9 7873 7698 5 1693 358 276 186 20 chr3 145331148 145331396 -14268387 - L1MEc LINE L1 -4888 1512 1224 5 1693 679 228 24 48 chr3 145331544 145331710 -14268073 - RSINE1 SINE B4 0 165 4 5 1693 294 169 56 14 chr3 145331719 145331791 -14267992 - L1MEc LINE L1 -5229 1171 1097 5 1693 441 321 74 55 chr3 145331869 145332126 -14267657 - B4 SINE B4 -20 272 11 5 1693 273 258 91 0 chr3 145332196 145332262 -14267521 - B1F SINE Alu -66 83 12 5 1693 1423 232 26 69 chr3 145332473 145332862 -14266921 - ORR1D1 LTR MaLR -2 372 1 5 1693 387 206 20 30 chr3 145332938 145333038 -14266745 - RLTR15 LTR ERVK -209 150 52 5 1693 890 103 0 7 chr3 145333091 145333228 -14266555 + (TTCC)n Simple_repeat Simple_repeat 2 137 0 5 1693 481 228 0 0 chr3 145333264 145333356 -14266427 - PB1D7 SINE Alu -5 115 24 5 1693 200 260 38 38 chr3 145333865 145333945 -14265838 + GA-rich Low_complexity Low_complexity 3 82 0 5 1693 432 260 89 51 chr3 145334188 145334346 -14265437 - RSINE1 SINE B4 0 165 2 5 1693 377 289 150 28 chr3 145335029 145335356 -14264427 - L1MEc LINE L1 -4390 2010 1644 5 1693 313 289 120 10 chr3 145335420 145335612 -14264171 - L1MEc LINE L1 -4889 1511 1299 5 1693 1220 54 0 0 chr3 145335826 145335973 -14263810 - B1_Mus2 SINE Alu 0 147 1 5 1693 218 29 0 56 chr3 145336263 145336299 -14263484 + (TTTTTG)n Simple_repeat Simple_repeat 3 36 0 5 1693 350 276 46 109 chr3 145336911 145337086 -14262697 - RSINE1 SINE B4 0 165 2 5 1693 333 0 0 0 chr3 145337694 145337731 -14262052 + (CA)n Simple_repeat Simple_repeat 1 37 0 5 1693 233 210 16 0 chr3 145339048 145339110 -14260673 + CT-rich Low_complexity Low_complexity 6 68 0 5 1693 243 0 0 0 chr3 145339114 145339141 -14260642 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 5 1693 706 209 7 7 chr3 145339142 145339277 -14260506 - B1_Mus2 SINE Alu -12 135 1 5 1693 6043 124 37 16 chr3 145339822 145340769 -14259014 + Lx4A LINE L1 6090 7056 -2 5 1693 24 0 0 0 chr3 145340772 145340796 -14258987 + AT_rich Low_complexity Low_complexity 1 24 0 5 1693 203 204 45 0 chr3 145341592 145341636 -14258147 + G-rich Low_complexity Low_complexity 2 47 0 5 1693 715 230 109 10 chr3 145341995 145342188 -14257595 - ID_B1 SINE B4 -3 221 10 5 1693 237 333 0 0 chr3 145342482 145342554 -14257229 - MLT1H1 LTR MaLR -214 341 270 5 1693 301 314 14 69 chr3 145343308 145343452 -14256331 + MLT1A LTR MaLR 27 162 -212 5 1693 23 0 0 0 chr3 145345226 145345249 -14254534 + AT_rich Low_complexity Low_complexity 1 23 0 6 1693 512 279 8 45 chr3 145345250 145345403 -14254380 - B3 SINE B2 -1 197 52 6 1693 304 287 40 0 chr3 145345451 145345552 -14254231 + MER5A DNA MER1_type 80 184 -5 6 1693 237 286 0 16 chr3 145346106 145346170 -14253613 + MER103 DNA DNA 63 125 -41 6 1693 280 305 85 8 chr3 145346492 145346621 -14253162 - MLT1A0 LTR MaLR -20 345 207 6 1693 1403 81 21 0 chr3 145346859 145347045 -14252738 + B2_Mm2 SINE B2 2 191 -4 6 1693 25 65 0 0 chr3 145348848 145348894 -14250889 + AT_rich Low_complexity Low_complexity 1 46 0 6 1693 356 71 18 0 chr3 145349325 145349381 -14250402 + (TTCC)n Simple_repeat Simple_repeat 1 57 0 6 1693 250 304 0 14 chr3 145349390 145349460 -14250323 - ID4_ SINE ID -11 72 4 6 1693 199 325 23 75 chr3 145349759 145349892 -14249891 + MIRb SINE MIR 69 194 -74 6 1693 295 374 33 33 chr3 145350149 145350392 -14249391 + Lx8 LINE L1 7031 7273 -200 6 1693 23 33 0 0 chr3 145350475 145350505 -14249278 + AT_rich Low_complexity Low_complexity 1 30 0 6 1693 317 274 63 0 chr3 145350831 145350926 -14248857 - PB1D7 SINE Alu -1 119 19 6 1693 303 181 43 0 chr3 145351088 145351187 -14248596 + B1_Mur1 SINE Alu 33 143 -6 6 1693 897 255 21 17 chr3 145351456 145351691 -14248092 - MLT1A0 LTR MaLR -129 236 1 6 1693 348 388 6 32 chr3 145351741 145351898 -14247885 + RSINE1 SINE B4 13 165 0 6 1693 216 341 0 0 chr3 145351898 145352074 -14247709 + (CA)n Simple_repeat Simple_repeat 1 176 0 6 1693 679 184 19 58 chr3 145352316 145352472 -14247311 - RSINE1 SINE B4 0 165 16 6 1693 724 255 42 83 chr3 145353150 145353491 -14246292 - MTE2b LTR MaLR 0 379 73 6 1693 306 0 0 0 chr3 145353503 145353537 -14246246 + (TG)n Simple_repeat Simple_repeat 2 35 0 6 1693 331 245 108 0 chr3 145353575 145353677 -14246106 - B3A SINE B2 -85 113 1 6 1693 965 225 0 6 chr3 145353704 145353887 -14245896 + B3A SINE B2 1 182 -16 6 1693 234 91 0 0 chr3 145353888 145353921 -14245862 + (CATA)n Simple_repeat Simple_repeat 2 34 0 6 1693 537 58 0 0 chr3 145353976 145354045 -14245738 + (GAATG)n Simple_repeat Simple_repeat 1 69 0 6 1693 211 164 16 16 chr3 145354099 145354161 -14245622 + (CA)n Simple_repeat Simple_repeat 1 62 0 6 1693 306 298 115 11 chr3 145354552 145354735 -14245048 + L3b LINE CR1 222 423 -59 6 1693 389 245 50 30 chr3 145355523 145355624 -14244159 + PB1D7 SINE Alu 18 120 0 6 1693 222 345 40 20 chr3 145356460 145356611 -14243172 - MIR SINE MIR -36 226 73 6 1693 346 265 40 10 chr3 145357029 145357128 -14242655 + RSINE1 SINE B4 13 114 -51 6 1693 354 23 0 0 chr3 145357229 145357272 -14242511 + (CA)n Simple_repeat Simple_repeat 2 44 0 6 1693 210 218 18 18 chr3 145357420 145357476 -14242307 - B1F1 SINE Alu -93 56 1 6 1693 435 274 71 12 chr3 145357576 145357746 -14242037 - B3A SINE B2 -17 181 2 6 1693 212 307 146 32 chr3 145358413 145358571 -14241212 + MIR SINE MIR 79 254 -8 6 1694 194 353 49 0 chr3 145359190 145359292 -14240491 + MIRb SINE MIR 63 169 -99 6 1694 468 212 53 9 chr3 145359415 145359525 -14240258 + B1F SINE Alu 19 133 -16 6 1694 2085 110 6 6 chr3 145359525 145359854 -14239929 - ORR1A4 LTR MaLR 0 329 1 6 1694 2920 252 68 104 chr3 145361676 145362278 -14237505 + Lx8 LINE L1 6446 7012 -461 6 1694 1293 81 0 0 chr3 145362278 145362785 -14236998 + (GGA)n Simple_repeat Simple_repeat 1 507 0 6 1694 2920 252 68 104 chr3 145362785 145363237 -14236546 + Lx8 LINE L1 7013 7465 -8 6 1694 21 36 0 0 chr3 145363242 145363270 -14236513 + AT_rich Low_complexity Low_complexity 1 28 0 6 1694 27 0 0 0 chr3 145363538 145363565 -14236218 + AT_rich Low_complexity Low_complexity 1 27 0 6 1694 2811 58 84 16 chr3 145363567 145363938 -14235845 + MTB LTR MaLR 1 396 -4 6 1694 23 0 0 0 chr3 145363992 145364015 -14235768 + AT_rich Low_complexity Low_complexity 1 23 0 6 1694 520 222 35 56 chr3 145364028 145364171 -14235612 - ID_B1 SINE B4 -4 220 81 6 1694 269 26 26 0 chr3 145364350 145364388 -14235395 + (GAAAA)n Simple_repeat Simple_repeat 2 40 0 6 1694 564 268 58 58 chr3 145364593 145364799 -14234984 + Lx8 LINE L1 7169 7374 -99 6 1694 1207 175 85 13 chr3 145364817 145365124 -14234659 - ORR1C2 LTR MaLR -1 393 61 6 1694 361 250 39 97 chr3 145365185 145365340 -14234443 - ORR1D1 LTR MaLR -248 146 1 6 1694 395 219 53 94 chr3 145365578 145365749 -14234034 + MER112 DNA MER1_type 1 164 -97 6 1694 238 326 0 50 chr3 145367383 145367483 -14232300 - RSINE1 SINE B4 0 165 71 6 1694 267 31 0 0 chr3 145368720 145368752 -14231031 + (TG)n Simple_repeat Simple_repeat 1 32 0 6 1694 232 303 0 0 chr3 145368752 145368818 -14230965 + (CA)n Simple_repeat Simple_repeat 1 66 0 6 1694 790 236 109 10 chr3 145370063 145370264 -14229519 - ID_B1 SINE B4 -3 221 1 6 1694 290 200 158 42 chr3 145371095 145371215 -14228568 + L2b LINE L2 3242 3375 0 6 1694 225 0 0 0 chr3 145371334 145371359 -14228424 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 6 1694 1535 43 16 0 chr3 145371449 145371635 -14228148 + B2_Mm1a SINE B2 1 189 -4 6 1694 23 0 0 0 chr3 145371651 145371674 -14228109 + AT_rich Low_complexity Low_complexity 1 23 0 6 1694 363 23 0 0 chr3 145372376 145372420 -14227363 + (CA)n Simple_repeat Simple_repeat 2 45 0 6 1694 3247 267 53 88 chr3 145372444 145373746 -14226037 + Lx9 LINE L1 6386 7641 -3 6 1694 437 263 191 37 chr3 145374043 145374284 -14225499 + MLT1E2 LTR MaLR 130 407 -220 6 1694 240 237 13 13 chr3 145374371 145374448 -14225335 + MLT1E2 LTR MaLR 551 627 0 6 1694 841 14 33 39 chr3 145375258 145375411 -14224372 + (TCTCC)n Simple_repeat Simple_repeat 2 153 0 6 1694 26 0 0 0 chr3 145376541 145376567 -14223216 + AT_rich Low_complexity Low_complexity 1 26 0 6 1694 206 291 102 8 chr3 145376747 145376865 -14222918 + MIRc SINE MIR 9 137 -131 6 1694 717 298 66 110 chr3 145377365 145377546 -14222237 + MLT1B LTR MaLR 1 172 -218 6 1694 926 169 119 0 chr3 145377546 145377706 -14222077 + B3A SINE B2 2 180 -18 6 1694 717 298 66 110 chr3 145377706 145377932 -14221851 + MLT1B LTR MaLR 173 390 0 6 1694 1118 167 20 22 chr3 145379065 145379403 -14220380 + RMER17C LTR ERVK 179 402 -8 6 1694 312 161 0 0 chr3 145380260 145380322 -14219461 + (TG)n Simple_repeat Simple_repeat 1 62 0 6 1694 686 120 8 0 chr3 145380321 145380446 -14219337 + (GA)n Simple_repeat Simple_repeat 1 126 0 6 1694 906 266 59 7 chr3 145380534 145380822 -14218961 - Tigger7 DNA MER2_type -2014 477 175 6 1694 400 164 53 3 chr3 145380833 145380920 -14218863 + MT2B LTR ERVL 1 89 -444 6 1694 264 100 0 0 chr3 145380921 145380961 -14218822 + (CTG)n Simple_repeat Simple_repeat 2 41 0 6 1694 1094 221 28 38 chr3 145381024 145381315 -14218468 + MT2B LTR ERVL 253 540 -61 6 1694 534 37 24 12 chr3 145381316 145381398 -14218385 + (TA)n Simple_repeat Simple_repeat 1 83 0 6 1694 323 326 47 0 chr3 145381398 145381527 -14218256 - Tigger7 DNA MER2_type -2356 135 1 6 1694 294 229 0 0 chr3 145381539 145381609 -14218174 + GA-rich Low_complexity Low_complexity 3 72 0 6 1694 22 56 0 0 chr3 145381648 145381684 -14218099 + AT_rich Low_complexity Low_complexity 1 36 0 6 1694 230 260 0 20 chr3 145381773 145381824 -14217959 - ID SINE ID -149 75 26 6 1694 284 242 81 40 chr3 145381939 145382038 -14217745 + B3A SINE B2 78 180 -18 6 1694 23 33 0 0 chr3 145382047 145382077 -14217706 + AT_rich Low_complexity Low_complexity 1 30 0 6 1694 180 0 0 0 chr3 145382225 145382245 -14217538 + (TTTTTG)n Simple_repeat Simple_repeat 3 22 0 6 1694 3187 67 5 7 chr3 145383404 145383826 -14215957 + BGLII LTR ERVK 1 421 0 6 1694 2460 72 187 146 chr3 145384200 145384692 -14215091 + RLTR1B LTR ERV1 1 512 0 6 1694 985 178 220 36 chr3 145384728 145385032 -14214751 + MYSERV16_I-int LTR ERVK 489 848 -1994 6 1694 2727 208 100 94 chr3 145385050 145386108 -14213675 + RMER3D-int LTR ERVK 633 1696 -1146 6 1694 3534 191 118 9 chr3 145386075 145387026 -14212757 + MYSERV16_I-int LTR ERVK 1273 2326 0 6 1694 2616 66 23 5 chr3 145387027 145387422 -14212361 + BGLII LTR ERVK 1 402 -19 6 1694 272 161 16 0 chr3 145388895 145388957 -14210826 + (TG)n Simple_repeat Simple_repeat 2 64 0 6 1694 942 161 0 0 chr3 145388976 145389205 -14210578 + (TG)n Simple_repeat Simple_repeat 1 229 0 6 1694 382 269 13 0 chr3 145389222 145389300 -14210483 + PB1D7 SINE Alu 32 110 -10 6 1694 425 214 0 0 chr3 145389483 145389553 -14210230 + RSINE1 SINE B4 15 84 -81 6 1694 262 306 47 12 chr3 145389553 145389569 -14210214 + B3 SINE B2 14 102 -114 6 1694 555 208 47 40 chr3 145389671 145389821 -14209962 + B3A SINE B2 2 152 -46 6 1694 500 0 0 16 chr3 145389822 145389883 -14209900 + (CA)n Simple_repeat Simple_repeat 1 60 0 6 1694 513 305 74 45 chr3 145391879 145392123 -14207660 - MER2 DNA MER2_type 0 345 95 6 1694 706 204 143 17 chr3 145392200 145392375 -14207408 - B3 SINE B2 -16 200 4 6 1694 275 349 112 61 chr3 145394448 145394744 -14205039 + MLT1A1 LTR MaLR 22 332 -76 6 1694 906 318 55 7 chr3 145394841 145395151 -14204632 - MER2 DNA MER2_type -9 336 12 6 1694 303 286 65 19 chr3 145395143 145395250 -14204533 + ORSL DNA Tip100 130 241 -34 6 1694 216 0 0 0 chr3 145395264 145395288 -14204495 + (CA)n Simple_repeat Simple_repeat 2 25 0 6 1694 889 151 14 14 chr3 145395316 145395464 -14204319 + B1_Mus1 SINE Alu 1 148 0 6 1694 328 325 0 0 chr3 145395856 145395939 -14203844 - PB1D10 SINE Alu -32 85 3 6 1694 879 83 0 0 chr3 145396564 145396685 -14203098 + (TCCC)n Simple_repeat Simple_repeat 4 124 0 6 1694 294 283 156 16 chr3 145398072 145398285 -14201498 + MLT1C LTR MaLR 8 276 -114 6 1694 2969 39 0 17 chr3 145398286 145398648 -14201135 + L1_Mus1 LINE L1 6212 6567 0 6 1694 378 239 110 33 chr3 145398678 145398769 -14201014 + B3A SINE B2 19 116 -82 6 1694 406 281 45 45 chr3 145398774 145398908 -14200875 + B3 SINE B2 83 216 0 6 1694 400 242 10 81 chr3 145398968 145399067 -14200716 + MLT1C LTR MaLR 376 467 0 6 1694 31 44 0 0 chr3 145399212 145399257 -14200526 + AT_rich Low_complexity Low_complexity 1 45 0 7 1694 803 159 43 14 chr3 145399258 145399398 -14200385 - B1_Mur4 SINE Alu -1 149 6 7 1694 430 292 41 68 chr3 145399266 145399413 -14200370 - B4 SINE B4 -73 219 77 7 1694 684 254 24 33 chr3 145399912 145400124 -14199659 + B3 SINE B2 1 210 -6 7 1694 251 177 16 0 chr3 145400142 145400204 -14199579 + GA-rich Low_complexity Low_complexity 3 65 0 7 1694 306 247 22 76 chr3 145400278 145400341 -14199442 - L1MEg LINE L1 -4119 1965 1909 7 1694 1252 48 0 0 chr3 145400341 145400488 -14199295 - B1_Mus2 SINE Alu 0 147 1 7 1694 306 247 22 76 chr3 145400488 145400516 -14199267 - L1MEg LINE L1 -4176 1908 1879 7 1694 1201 75 0 0 chr3 145401489 145401636 -14198147 + B1_Mm SINE Alu 1 147 0 7 1694 225 0 0 0 chr3 145402110 145402135 -14197648 + (CCCCCA)n Simple_repeat Simple_repeat 6 30 0 7 1694 466 206 75 22 chr3 145403136 145403270 -14196513 + MTD LTR MaLR 265 405 -14 7 1694 214 219 60 45 chr3 145403485 145403552 -14196231 - B3A SINE B2 -120 78 11 7 1694 426 288 63 21 chr3 145403559 145403701 -14196082 - B1F SINE Alu -1 148 1 7 1694 297 338 86 0 chr3 145404781 145404920 -14194863 + MER46C DNA MER2_type 160 310 -28 7 1694 315 0 0 0 chr3 145404930 145404965 -14194818 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 7 1694 2106 130 24 41 chr3 145405116 145405533 -14194250 - RMER17C LTR ERVK 0 410 1 7 1694 505 267 122 22 chr3 145406352 145406532 -14193251 - Tigger7 DNA MER2_type -23 2468 2271 7 1694 703 104 9 9 chr3 145407517 145407633 -14192150 + (TTCC)n Simple_repeat Simple_repeat 1 116 0 7 1694 8758 113 30 24 chr3 145407636 145409000 -14190783 - Lx2 LINE L1 -2 6995 5623 7 1694 279 0 0 0 chr3 145409016 145409047 -14190736 + (TG)n Simple_repeat Simple_repeat 1 31 0 7 1694 322 226 0 0 chr3 145409631 145409693 -14190090 - Lx8 LINE L1 -821 6652 6591 7 1694 308 301 97 97 chr3 145410200 145410395 -14189388 + MLT1G LTR MaLR 64 299 -296 7 1694 1204 50 0 0 chr3 145410569 145410710 -14189073 + B1_Mm SINE Alu 1 141 -6 7 1694 207 0 0 0 chr3 145410712 145410735 -14189048 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 7 1694 873 82 32 3 chr3 145411668 145411848 -14187935 - ORR1A3 LTR MaLR -35 291 15 7 1694 205 357 76 35 chr3 145411914 145412059 -14187724 - L2 LINE L2 -694 2725 2575 7 1694 199 265 0 105 chr3 145412137 145412213 -14187570 - L2 LINE L2 -1096 2323 2256 7 1694 1060 78 0 34 chr3 145412265 145412411 -14187372 + B1_Mm SINE Alu 1 141 -6 7 1694 288 0 0 0 chr3 145412414 145412446 -14187337 + (CAAAA)n Simple_repeat Simple_repeat 3 34 0 7 1694 213 39 0 0 chr3 145412648 145412674 -14187109 + (CA)n Simple_repeat Simple_repeat 2 27 0 7 1694 1968 183 95 106 chr3 145413296 145413835 -14185948 + RMER16 LTR ERVK 1 533 0 7 1694 21 0 0 0 chr3 145414935 145414956 -14184827 + AT_rich Low_complexity Low_complexity 1 21 0 7 1694 180 306 65 0 chr3 145415001 145415063 -14184720 + L2a LINE L2 3344 3409 -17 7 1694 1187 119 11 0 chr3 145415201 145415377 -14184406 + B2_Mm1a SINE B2 9 186 -7 7 1694 863 284 60 0 chr3 145415414 145415646 -14184137 + B4 SINE B4 36 281 -11 7 1694 331 357 82 41 chr3 145415690 145415909 -14183874 - MIR SINE MIR -2 260 33 7 1694 375 326 44 48 chr3 145416005 145416084 -14183699 + MLT1J1 LTR MaLR 4 87 -357 7 1694 5858 121 49 43 chr3 145416084 145417063 -14182720 + Lx4A LINE L1 6074 7058 0 7 1694 375 326 44 48 chr3 145417063 145417189 -14182594 + MLT1J1 LTR MaLR 88 208 -236 7 1694 212 383 58 34 chr3 145417436 145417728 -14182055 + L2c LINE L2 3034 3332 -55 7 1694 383 249 194 6 chr3 145417934 145418104 -14181679 + L3 LINE CR1 3558 3759 -730 7 1694 2238 103 48 0 chr3 145418667 145418979 -14180804 - ORR1A2 LTR MaLR 0 327 1 7 1694 242 335 107 41 chr3 145419463 145419706 -14180077 + L3 LINE CR1 3996 4254 -235 7 1694 359 336 115 0 chr3 145419939 145420061 -14179722 - B1F SINE Alu -13 136 1 7 1694 21 36 0 0 chr3 145421599 145421627 -14178156 + GC_rich Low_complexity Low_complexity 1 28 0 7 1694 289 328 0 0 chr3 145423680 145423769 -14176014 - ID4_ SINE ID -57 95 7 7 1694 446 0 19 0 chr3 145424367 145424421 -14175362 + (TG)n Simple_repeat Simple_repeat 1 55 0 7 1694 417 158 8 40 chr3 145424731 145424856 -14174927 + CT-rich Low_complexity Low_complexity 1 121 0 7 1694 340 268 228 52 chr3 145424902 145425095 -14174688 - MIRb SINE MIR -8 260 34 7 1694 219 331 118 35 chr3 145425170 145425339 -14174444 + L2b LINE L2 3178 3360 -15 7 1694 545 273 14 0 chr3 145425391 145425530 -14174253 - B1F SINE Alu -8 141 1 7 1694 278 314 81 0 chr3 145426533 145426657 -14173126 + Lx8 LINE L1 6982 7115 -358 7 1694 634 266 91 20 chr3 145426707 145426960 -14172823 + Lx8 LINE L1 7201 7471 -2 7 1694 592 205 177 23 chr3 145427505 145427680 -14172103 + B3 SINE B2 5 206 -10 7 1694 710 303 37 30 chr3 145428473 145428742 -14171041 - B4A SINE B4 -20 272 2 7 1694 231 282 154 0 chr3 145429685 145429763 -14170020 - MIRm SINE MIR -15 261 172 7 1694 528 260 52 0 chr3 145431930 145432084 -14167699 - RSINE1 SINE B4 0 165 4 7 1694 241 300 0 0 chr3 145433973 145434043 -14165740 + (CA)n Simple_repeat Simple_repeat 1 70 0 7 1694 227 294 43 86 chr3 145434560 145434653 -14165130 + Charlie9 DNA MER1_type 2661 2749 -8 7 1694 519 229 8 41 chr3 145434998 145435121 -14164662 - B4A SINE B4 -173 119 1 7 1694 233 29 29 0 chr3 145435567 145435601 -14164182 + (CTGTG)n Simple_repeat Simple_repeat 5 39 0 7 1694 330 87 0 0 chr3 145438267 145438313 -14161470 + (TTTC)n Simple_repeat Simple_repeat 2 47 0 7 1694 973 111 18 0 chr3 145440498 145440669 -14159114 + (TTCTCC)n Simple_repeat Simple_repeat 6 179 0 7 1694 645 105 0 0 chr3 145440669 145440764 -14159019 + (TCCCC)n Simple_repeat Simple_repeat 5 99 0 7 1694 281 333 0 83 chr3 145440914 145441035 -14158748 + ID_B1 SINE B4 100 210 -14 7 1694 189 107 0 0 chr3 145441055 145441083 -14158700 + (CAA)n Simple_repeat Simple_repeat 2 29 0 7 1694 193 268 136 58 chr3 145441401 145441504 -14158279 + MIRc SINE MIR 46 156 -112 7 1694 426 39 0 0 chr3 145441783 145441835 -14157948 + (TC)n Simple_repeat Simple_repeat 2 53 0 7 1694 342 115 0 0 chr3 145441851 145441912 -14157871 + (GA)n Simple_repeat Simple_repeat 1 61 0 7 1694 271 194 10 10 chr3 145442261 145442365 -14157418 + CT-rich Low_complexity Low_complexity 1 104 0 7 1694 1312 96 6 0 chr3 145443395 145443572 -14156211 + B2_Mm1a SINE B2 2 179 -14 7 1694 375 244 244 0 chr3 145443587 145443702 -14156081 + B3A SINE B2 2 144 -54 7 1694 369 0 0 0 chr3 145443703 145443744 -14156039 + (CA)n Simple_repeat Simple_repeat 1 41 0 7 1694 809 281 79 15 chr3 145444593 145444860 -14154923 + B4A SINE B4 3 286 -6 7 1694 227 246 16 16 chr3 145444869 145444931 -14154852 + (CATA)n Simple_repeat Simple_repeat 3 64 0 7 1694 21 0 0 0 chr3 145444933 145444954 -14154829 + AT_rich Low_complexity Low_complexity 1 21 0 7 1694 941 235 89 110 chr3 145446662 145447044 -14152739 + MTE2a LTR MaLR 1 374 -5 7 1694 316 240 45 0 chr3 145447173 145447265 -14152518 - L1MD LINE L1 -551 5611 5513 7 1694 1401 118 67 4 chr3 145447274 145447512 -14152271 + Lx2 LINE L1 6745 6997 0 7 1694 468 250 0 0 chr3 145447554 145447714 -14152069 + (TG)n Simple_repeat Simple_repeat 1 160 0 7 1694 467 281 14 28 chr3 145447770 145447913 -14151870 - ID_B1 SINE B4 -6 218 78 7 1694 299 306 61 18 chr3 145447913 145448076 -14151707 - L1MD LINE L1 -885 5474 5305 7 1694 266 262 122 0 chr3 145448223 145448330 -14151453 - L1MD LINE L1 -937 5209 5090 7 1694 21 57 0 0 chr3 145448774 145448809 -14150974 + AT_rich Low_complexity Low_complexity 1 35 0 7 1694 932 168 0 13 chr3 145449796 145449947 -14149836 + B1_Mur2 SINE Alu 1 149 0 7 1694 392 204 122 17 chr3 145450592 145450707 -14149076 - RCHARR1 DNA MER1_type 0 974 848 7 1694 309 222 111 0 chr3 145450779 145450860 -14148923 - RSINE1 SINE B4 -58 107 18 7 1694 849 295 33 11 chr3 145450884 145451155 -14148628 + B4A SINE B4 10 286 -6 7 1694 2432 249 113 7 chr3 145451203 145451934 -14147849 - RCHARR1 DNA MER1_type -127 847 39 7 1694 753 243 85 150 chr3 145452423 145452824 -14146959 + MTE2a LTR MaLR 1 375 -4 7 1694 231 149 254 0 chr3 145455184 145455251 -14144532 + B2_Mm2 SINE B2 23 106 -89 7 1694 394 239 175 7 chr3 145455233 145455376 -14144407 + B4A SINE B4 114 280 -12 7 1694 257 246 0 28 chr3 145455607 145455678 -14144105 + CT-rich Low_complexity Low_complexity 5 73 0 7 1694 21 0 0 0 chr3 145456229 145456250 -14143533 + AT_rich Low_complexity Low_complexity 1 21 0 7 1694 1110 249 40 75 chr3 145456586 145456837 -14142946 + L1MC3 LINE L1 3487 3739 -2407 7 1694 788 214 37 32 chr3 145456837 145457025 -14142758 + B3A SINE B2 3 191 -7 7 1694 1110 249 40 75 chr3 145457025 145457254 -14142529 + L1MC3 LINE L1 3740 3950 -2196 7 1694 430 183 118 37 chr3 145457352 145457488 -14142295 + RSINE1 SINE B4 2 148 -17 7 1694 428 273 106 60 chr3 145457525 145457879 -14141904 + L1MC3 LINE L1 3982 4373 -1773 7 1694 717 271 9 0 chr3 145458071 145458165 -14141618 + L1MC3 LINE L1 5204 5297 -849 7 1694 735 173 64 7 chr3 145458165 145458305 -14141478 + B1_Mur2 SINE Alu 1 148 -1 7 1694 1295 308 156 53 chr3 145458305 145459253 -14140530 + L1MC3 LINE L1 5298 6300 -1742 7 1694 1079 112 6 0 chr3 145459253 145459432 -14140351 + (GGGA)n Simple_repeat Simple_repeat 1 180 0 7 1694 1295 308 162 52 chr3 145459432 145459788 -14139995 + L1MC3 LINE L1 6265 6696 -1089 7 1694 630 276 211 55 chr3 145459869 145460564 -14139219 + L1MC3 LINE L1 6981 7784 -1 7 1694 424 311 21 37 chr3 145460763 145460953 -14138830 + ORR1E LTR MaLR 7 193 -166 7 1694 186 43 0 0 chr3 145462185 145462208 -14137575 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 7 1694 222 180 80 0 chr3 145462702 145462752 -14137031 + B4 SINE B4 1 54 -238 7 1694 424 272 138 94 chr3 145462928 145463333 -14136450 - L1M5 LINE L1 -399 5763 5341 7 1694 234 258 48 40 chr3 145463593 145463718 -14136065 - L1M3 LINE L1 -1131 5009 4884 7 1694 287 269 117 51 chr3 145464107 145464244 -14135539 + LTR48 LTR ERV1 1 146 -641 7 1694 224 30 0 29 chr3 145464650 145464684 -14135099 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 7 1694 947 49 122 0 chr3 145464684 145464807 -14134976 - B1_Mus2 SINE Alu -8 139 2 7 1694 328 252 70 37 chr3 145465576 145465710 -14134073 - PB1D10 SINE Alu 0 149 6 7 1694 547 303 7 0 chr3 145466110 145466252 -14133531 - ID_B1 SINE B4 0 224 82 8 1694 5870 64 39 0 chr3 145466540 145467294 -14132489 + L1Md_F2 LINE L1 5800 6582 0 8 1694 216 0 0 0 chr3 145469219 145469243 -14130540 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 8 1694 429 219 21 10 chr3 145470246 145470343 -14129440 + L1MA8 LINE L1 6125 6222 -69 8 1694 981 157 0 0 chr3 145470351 145470523 -14129260 + (TA)n Simple_repeat Simple_repeat 2 173 0 8 1694 212 86 0 28 chr3 145470954 145470990 -14128793 + (TTG)n Simple_repeat Simple_repeat 2 36 0 8 1694 1371 234 80 22 chr3 145470991 145471114 -14128669 + MTD LTR MaLR 23 144 -275 8 1694 432 0 0 0 chr3 145471114 145471162 -14128621 + (CA)n Simple_repeat Simple_repeat 2 49 0 8 1694 1371 234 80 22 chr3 145471162 145471400 -14128383 + MTD LTR MaLR 145 404 -15 8 1694 382 262 0 0 chr3 145472564 145472644 -14127139 - ID4_ SINE ID 0 83 4 8 1694 537 337 23 0 chr3 145475330 145475502 -14124281 - B3A SINE B2 -22 176 1 8 1694 365 20 41 0 chr3 145475571 145475620 -14124163 + (TTTG)n Simple_repeat Simple_repeat 2 52 0 8 1694 1158 50 0 0 chr3 145475620 145475759 -14124024 - B1_Mus1 SINE Alu -9 139 1 8 1694 213 39 0 0 chr3 145477044 145477070 -14122713 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 8 1694 1360 136 116 0 chr3 145477070 145477328 -14122455 - Lx2A1 LINE L1 -15 6993 6706 8 1694 899 246 54 0 chr3 145477334 145477537 -14122246 - ID_B1 SINE B4 -9 215 2 8 1694 582 15 0 0 chr3 145477998 145478065 -14121718 + (TTTTA)n Simple_repeat Simple_repeat 2 68 0 8 1694 488 206 163 23 chr3 145478390 145478519 -14121264 - B1_Mur2 SINE Alu -1 148 2 8 1694 242 336 147 21 chr3 145479594 145479737 -14120046 - MER21B LTR ERV1 -296 567 407 8 1694 353 317 31 142 chr3 145479839 145480093 -14119690 - MER21B LTR ERV1 -615 248 23 8 1694 196 343 28 28 chr3 145480118 145480226 -14119557 - L4 LINE RTE -1360 669 562 8 1694 398 226 6 45 chr3 145480729 145480894 -14118889 + B3 SINE B2 42 216 0 8 1694 205 264 130 11 chr3 145481553 145481645 -14118138 - MIRb SINE MIR -130 138 36 8 1694 447 322 13 20 chr3 145482098 145482250 -14117533 - RSINE1 SINE B4 -12 153 3 8 1694 21 0 0 0 chr3 145482250 145482271 -14117512 + AT_rich Low_complexity Low_complexity 1 21 0 8 1694 342 269 77 36 chr3 145483492 145483712 -14116071 + L1MEc LINE L1 46 274 -6126 8 1694 188 250 3 17 chr3 145483922 145483986 -14115797 + MIR SINE MIR 82 146 -130 8 1694 457 278 95 74 chr3 145483993 145484183 -14115600 + B3A SINE B2 1 194 -4 8 1694 212 122 24 0 chr3 145484421 145484462 -14115321 + (GAAA)n Simple_repeat Simple_repeat 4 45 0 8 1694 440 341 0 0 chr3 145484533 145484671 -14115112 - ID_B1 SINE B4 -5 219 82 8 1694 186 302 113 10 chr3 145484745 145484842 -14114941 + MIR3 SINE MIR 76 182 -26 8 1694 886 218 120 17 chr3 145484968 145485201 -14114582 + MTE2b LTR MaLR 1 257 -122 8 1694 485 217 57 21 chr3 145485236 145485377 -14114406 + MTE2b LTR MaLR 208 353 -26 8 1694 342 0 0 0 chr3 145486298 145486336 -14113447 + (TG)n Simple_repeat Simple_repeat 2 39 0 8 1694 477 235 57 38 chr3 145487379 145487538 -14112245 - RSINE1 SINE B4 0 165 4 8 1694 180 121 30 0 chr3 145488058 145488091 -14111692 + L3 LINE CR1 1389 1422 -3067 8 1694 384 88 0 0 chr3 145489436 145489493 -14110290 + (TG)n Simple_repeat Simple_repeat 2 58 0 8 1694 279 274 203 8 chr3 145489494 145489612 -14110171 - RSINE1 SINE B4 -22 143 3 8 1695 620 149 20 45 chr3 145491449 145491940 -14107843 + (TG)n Simple_repeat Simple_repeat 1 478 0 8 1695 810 178 64 0 chr3 145492550 145492707 -14107076 + B3 SINE B2 34 200 -16 8 1695 306 0 0 0 chr3 145492707 145492741 -14107042 + (TGAA)n Simple_repeat Simple_repeat 3 36 0 8 1695 1151 158 8 75 chr3 145493096 145493335 -14106448 - URR1B DNA MER1_type 0 225 3 8 1695 1669 132 264 6 chr3 145493710 145494044 -14105739 + MTC LTR MaLR 2 421 0 8 1695 1382 55 71 0 chr3 145494201 145494383 -14105400 + B2_Mm2 SINE B2 1 195 0 8 1695 198 0 0 0 chr3 145494513 145494535 -14105248 + (CAAAA)n Simple_repeat Simple_repeat 1 22 0 8 1695 337 339 22 30 chr3 145494549 145494683 -14105100 + RSINE1 SINE B4 5 137 -28 8 1695 229 204 61 0 chr3 145496020 145496069 -14103714 - MLT1L LTR MaLR -238 372 321 8 1695 290 152 17 0 chr3 145497809 145497868 -14101915 + (TA)n Simple_repeat Simple_repeat 1 60 0 8 1695 1815 171 142 20 chr3 145497930 145498281 -14101502 + Lx5 LINE L1 6655 7048 -2 8 1695 932 300 92 28 chr3 145498296 145498731 -14101052 - Lx8 LINE L1 -7 7466 7004 8 1695 2011 146 39 47 chr3 145499030 145499439 -14100344 - RLTR28 LTR ERVL -1 523 118 8 1695 402 344 91 60 chr3 145499662 145499908 -14099875 - MLT1E3 LTR MaLR -9 645 365 8 1695 300 184 105 0 chr3 145500166 145500242 -14099541 + MTE2b LTR MaLR 294 377 -2 1 1695 480 306 62 51 chr3 145500242 145500514 -14099269 - MLT1E1A LTR MaLR -355 325 51 2 1695 238 223 0 27 chr3 145501738 145501823 -14097960 + MIRb SINE MIR 103 182 -86 3 1695 3097 74 7 10 chr3 145503067 145503475 -14096308 + MTB_Mm LTR MaLR 1 407 0 4 1695 234 300 58 29 chr3 145503737 145503840 -14095943 - MIRb SINE MIR -33 235 130 5 1695 470 292 68 12 chr3 145504083 145504383 -14095400 + MTE2b LTR MaLR 3 368 -11 6 1695 743 156 6 0 chr3 145504496 145504675 -14095108 + (TTGG)n Simple_repeat Simple_repeat 1 180 0 7 1695 415 284 43 29 chr3 145504688 145504826 -14094957 - B1F SINE Alu -8 141 2 8 1695 459 0 0 0 chr3 145506529 145506580 -14093203 + (TG)n Simple_repeat Simple_repeat 1 51 0 9 1695 351 0 0 0 chr3 145506580 145506618 -14093165 + (GA)n Simple_repeat Simple_repeat 1 39 0 1 1695 259 283 97 11 chr3 145507242 145507335 -14092448 + B1F2 SINE Alu 15 115 -34 1 1695 26 0 0 0 chr3 145507335 145507361 -14092422 + AT_rich Low_complexity Low_complexity 1 26 0 1 1695 1217 61 0 0 chr3 145507553 145507700 -14092083 + B1_Mus2 SINE Alu 1 147 0 1 1695 1331 140 18 9 chr3 145508019 145508243 -14091540 + URR1A DNA MER1_type 1 226 0 1 1695 349 229 31 117 chr3 145508269 145508432 -14091351 - B1F SINE Alu 0 149 1 1 1695 192 200 0 0 chr3 145508540 145508580 -14091203 + GA-rich Low_complexity Low_complexity 2 41 0 1 1695 1462 102 17 4 chr3 145509132 145509367 -14090416 - ORR1A4 LTR MaLR 0 329 92 1 1695 954 148 0 0 chr3 145509743 145509905 -14089878 + (TATG)n Simple_repeat Simple_repeat 3 164 0 1 1695 421 352 52 33 chr3 145510756 145511026 -14088757 + B4 SINE B4 1 275 -17 1 1695 237 136 0 0 chr3 145511064 145511108 -14088675 - L1MB3 LINE L1 -25 6155 6112 2 1695 3659 44 15 4 chr3 145511497 145511951 -14087832 + L1Md_F2 LINE L1 6122 6580 -2 2 1695 260 267 90 1 chr3 145512442 145512554 -14087229 - L1M5 LINE L1 -2317 3829 3688 2 1695 480 35 0 0 chr3 145512554 145512612 -14087171 + (TTTC)n Simple_repeat Simple_repeat 3 60 0 2 1695 236 289 208 15 chr3 145512612 145512696 -14087087 - L1M5 LINE L1 -2459 3687 3596 2 1695 1370 89 16 0 chr3 145512760 145512950 -14086833 - B2_Mm2 SINE B2 -2 193 1 2 1695 284 274 0 42 chr3 145513197 145513315 -14086468 - L1M5 LINE L1 -2905 3241 3129 2 1695 210 273 0 0 chr3 145513412 145513467 -14086316 + T-rich Low_complexity Low_complexity 1 55 0 2 1695 559 234 0 0 chr3 145513469 145513580 -14086203 - ID_B1 SINE B4 -1 223 113 2 1695 451 260 10 0 chr3 145514589 145514689 -14085094 - B3 SINE B2 -8 208 108 2 1695 258 297 55 55 chr3 145514689 145514835 -14084948 - Lx9 LINE L1 -417 7227 7082 2 1695 335 280 15 22 chr3 145514900 145515035 -14084748 - L1MB3 LINE L1 -107 6076 5943 2 1695 306 0 0 0 chr3 145515740 145515774 -14084009 + (CA)n Simple_repeat Simple_repeat 2 35 0 2 1695 560 101 0 11 chr3 145517096 145517186 -14082597 + (TCC)n Simple_repeat Simple_repeat 2 90 0 3 1695 225 65 0 0 chr3 145519431 145519462 -14080321 + (CTTG)n Simple_repeat Simple_repeat 1 31 0 3 1695 4651 128 15 13 chr3 145519927 145520682 -14079101 + RMER6A LTR ERVK 1 756 0 3 1695 1135 76 14 0 chr3 145521645 145521790 -14077993 + B1_Mus1 SINE Alu 2 148 0 3 1695 753 264 126 45 chr3 145521977 145522374 -14077409 + Lx8 LINE L1 7041 7469 -4 3 1695 342 0 0 0 chr3 145524475 145524513 -14075270 + (TG)n Simple_repeat Simple_repeat 2 39 0 3 1695 659 307 84 25 chr3 145525641 145525962 -14073821 + ORR1E LTR MaLR 20 359 0 3 1695 387 0 0 0 chr3 145526223 145526266 -14073517 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 1695 569 221 64 21 chr3 145526468 145526723 -14073060 - ORR1D2 LTR MaLR -43 327 2 3 1695 30 0 0 0 chr3 145526991 145527021 -14072762 + AT_rich Low_complexity Low_complexity 1 30 0 3 1695 39302 6 0 1 chr3 145528065 145533831 -14065952 + L1Md_A LINE L1 1 5586 -297 4 1695 9199 3 0 0 chr3 145533831 145534827 -14064956 + L1Md_A LINE L1 5587 6582 0 4 1695 378 0 0 0 chr3 145535513 145535555 -14064228 + (CA)n Simple_repeat Simple_repeat 2 43 0 4 1695 2596 103 35 33 chr3 145536085 145536537 -14063246 - RLTR11B LTR ERVK 0 453 1 4 1695 1260 66 0 0 chr3 145536571 145536784 -14062999 + (TG)n Simple_repeat Simple_repeat 1 213 0 4 1695 214 244 0 0 chr3 145536826 145536871 -14062912 - B1F SINE Alu -95 54 10 4 1695 223 171 0 24 chr3 145537617 145537659 -14062124 + (CACCC)n Simple_repeat Simple_repeat 1 41 0 4 1695 867 128 14 0 chr3 145538135 145538276 -14061507 + B1_Mur4 SINE Alu 8 150 0 4 1695 966 134 214 5 chr3 145538854 145539041 -14060742 - URR1A DNA MER1_type 0 226 1 4 1695 236 254 34 0 chr3 145540167 145540226 -14059557 + ID4_ SINE ID 13 73 -10 4 1695 213 163 0 0 chr3 145540226 145540275 -14059508 + (CA)n Simple_repeat Simple_repeat 2 50 0 4 1695 234 296 0 47 chr3 145540496 145540581 -14059202 + ID4_ SINE ID 2 82 -1 5 1695 326 268 0 11 chr3 145540630 145540717 -14059066 + MER5B DNA MER1_type 88 173 -5 5 1695 657 261 90 39 chr3 145541251 145541506 -14058277 + B4A SINE B4 6 273 -19 5 1695 180 0 0 0 chr3 145542343 145542363 -14057420 + (A)n Simple_repeat Simple_repeat 1 20 0 5 1695 634 223 95 0 chr3 145542364 145542512 -14057271 + B3A SINE B2 37 198 0 5 1695 1025 130 12 12 chr3 145543047 145543218 -14056565 + B2_Mm1t SINE B2 1 171 -22 5 1695 315 94 361 18 chr3 145543269 145543377 -14056406 + B2_Mm2 SINE B2 47 191 -4 5 1695 255 353 39 10 chr3 145543655 145543758 -14056025 + PB1D10 SINE Alu 1 106 -14 5 1695 650 58 29 9 chr3 145543759 145543864 -14055919 + (GGA)n Simple_repeat Simple_repeat 3 109 0 5 1695 969 222 5 36 chr3 145543880 145544076 -14055707 + B3 SINE B2 9 198 -18 5 1695 349 248 55 7 chr3 145544079 145544225 -14055558 + MER63C DNA AcHobo 92 244 -686 6 1695 624 269 61 0 chr3 145544260 145544472 -14055311 - RCHARR1 DNA MER1_type -2 972 748 6 1695 1024 330 68 5 chr3 145544469 145544907 -14054876 - RCHARR1 DNA MER1_type -505 469 4 6 1695 437 364 99 0 chr3 145545068 145545411 -14054372 + MER63C DNA AcHobo 455 831 -99 6 1695 846 243 30 34 chr3 145546322 145546590 -14053193 + MTEb LTR MaLR 1 267 -112 6 1695 1370 238 191 16 chr3 145546779 145547291 -14052492 + Lx8 LINE L1 6869 7470 -3 6 1695 229 243 29 0 chr3 145547298 145547324 -14052459 + (TA)n Simple_repeat Simple_repeat 1 27 0 6 1695 1203 87 29 17 chr3 145547324 145547499 -14052284 + B2_Mm2 SINE B2 1 177 -18 6 1695 229 243 29 0 chr3 145547499 145547542 -14052241 + (TA)n Simple_repeat Simple_repeat 1 44 0 6 1695 747 122 65 0 chr3 145547552 145547675 -14052108 + B1_Mus1 SINE Alu 10 140 -8 6 1695 186 43 0 0 chr3 145547678 145547701 -14052082 + (TAAAA)n Simple_repeat Simple_repeat 1 23 0 6 1695 297 295 61 18 chr3 145547711 145547825 -14051958 + PB1D9 SINE Alu 1 119 -1 6 1695 267 224 0 0 chr3 145549497 145549573 -14050210 + (CA)n Simple_repeat Simple_repeat 1 76 0 7 1695 414 0 0 0 chr3 145549658 145549704 -14050079 + (TG)n Simple_repeat Simple_repeat 2 47 0 7 1695 651 26 0 0 chr3 145549920 145549997 -14049786 + (GA)n Simple_repeat Simple_repeat 2 78 0 7 1695 354 200 40 0 chr3 145551184 145551259 -14048524 + L1M2 LINE L1 4986 5063 -1080 7 1695 248 222 73 100 chr3 145551282 145551432 -14048351 + Lx8 LINE L1 7319 7464 -9 7 1695 445 289 125 15 chr3 145552425 145552527 -14047256 + ID_B1 SINE B4 2 103 -121 7 1695 1209 34 0 0 chr3 145552527 145552673 -14047110 + (TC)n Simple_repeat Simple_repeat 2 147 0 7 1695 445 289 125 15 chr3 145552673 145552770 -14047013 + ID_B1 SINE B4 104 222 -2 7 1695 282 87 0 0 chr3 145552835 145552881 -14046902 + (GA)n Simple_repeat Simple_repeat 2 47 0 7 1695 766 315 11 43 chr3 145552895 145553177 -14046606 - B4 SINE B4 -18 274 2 7 1695 238 258 15 15 chr3 145557356 145557423 -14042360 + G-rich Low_complexity Low_complexity 5 71 0 7 1695 235 323 216 8 chr3 145557700 145557825 -14041958 + RSINE1 SINE B4 2 152 -13 8 1695 228 211 0 0 chr3 145557886 145557938 -14041845 - L1ME4a LINE L1 -79 6045 5994 8 1695 913 213 19 84 chr3 145559829 145560044 -14039739 + B3 SINE B2 1 201 -15 8 1695 1150 95 0 0 chr3 145561282 145561430 -14038353 + B1_Mus1 SINE Alu 1 148 0 8 1695 259 265 15 0 chr3 145561743 145561811 -14037972 - L1MA9 LINE L1 -235 6077 6009 8 1695 400 288 8 17 chr3 145562326 145562446 -14037337 + PB1D7 SINE Alu 1 119 -1 8 1695 917 146 0 6 chr3 145563742 145563908 -14035875 + GA-rich Low_complexity Low_complexity 2 166 0 8 1695 238 297 149 52 chr3 145563946 145564195 -14035588 + L1M4b LINE L1 198 470 -6864 8 1695 371 312 105 16 chr3 145564453 145564759 -14035024 + L1M4b LINE L1 5041 5373 -1633 8 1695 664 80 68 29 chr3 145564763 145564866 -14034917 - B3 SINE B2 -108 108 2 8 1695 1115 290 108 35 chr3 145564950 145565244 -14034539 + L1M4b LINE L1 5567 5888 -1118 8 1695 419 328 36 5 chr3 145565244 145565440 -14034343 + ID_B1 SINE B4 4 205 -19 8 1695 342 0 0 0 chr3 145565448 145565486 -14034297 + (TAA)n Simple_repeat Simple_repeat 2 39 0 9 1695 1115 291 94 40 chr3 145565486 145565886 -14033897 + L1M4b LINE L1 5896 6302 -729 8 1695 1119 197 25 0 chr3 145565889 145566092 -14033691 + B3 SINE B2 9 216 0 9 1695 482 327 78 43 chr3 145566189 145566419 -14033364 + B4A SINE B4 44 281 -11 9 1695 367 100 14 14 chr3 145566455 145566526 -14033257 + (CA)n Simple_repeat Simple_repeat 2 72 0 9 1695 626 113 0 9 chr3 145566853 145566960 -14032823 + (GGAA)n Simple_repeat Simple_repeat 4 109 0 9 1695 379 313 29 29 chr3 145567291 145567429 -14032354 + B4A SINE B4 4 141 -151 9 1695 1277 241 116 29 chr3 145567438 145567819 -14031964 - MTD LTR MaLR 0 419 6 9 1695 424 301 36 7 chr3 145567824 145567961 -14031822 + B4A SINE B4 149 289 -3 9 1695 221 250 19 0 chr3 145567965 145568017 -14031766 + (CA)n Simple_repeat Simple_repeat 2 54 0 9 1695 510 177 0 30 chr3 145568153 145568266 -14031517 + B1_Mur1 SINE Alu 2 107 -42 9 1695 275 173 0 88 chr3 145568909 145568966 -14030817 + MTE2a LTR MaLR 1 52 -327 9 1695 560 14 0 14 chr3 145569142 145569212 -14030571 + (GGA)n Simple_repeat Simple_repeat 1 69 0 1 1695 197 178 0 22 chr3 145569310 145569356 -14030427 + G-rich Low_complexity Low_complexity 5 49 0 1 1695 583 247 18 94 chr3 145569359 145569529 -14030254 - ORR1E LTR MaLR -169 190 34 1 1695 1236 54 0 0 chr3 145569922 145570070 -14029713 + B1_Mus1 SINE Alu 1 148 0 1 1695 362 291 45 18 chr3 145570773 145570885 -14028898 + PB1D10 SINE Alu 3 117 0 1 1695 328 331 45 15 chr3 145570896 145571028 -14028755 + B4A SINE B4 1 136 -156 1 1695 223 163 0 39 chr3 145571104 145571155 -14028628 + (CATA)n Simple_repeat Simple_repeat 3 51 0 1 1695 227 228 35 0 chr3 145571279 145571336 -14028447 + (TTGG)n Simple_repeat Simple_repeat 1 59 0 1 1695 3695 161 77 168 chr3 145571982 145572975 -14026808 + RMER19B LTR ERVK 1 902 0 1 1695 549 76 0 0 chr3 145573275 145573354 -14026429 + (CA)n Simple_repeat Simple_repeat 1 79 0 1 1695 423 0 0 0 chr3 145573436 145573483 -14026300 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 1695 378 0 0 0 chr3 145573689 145573731 -14026052 + (TG)n Simple_repeat Simple_repeat 2 43 0 1 1695 622 320 61 29 chr3 145575430 145575707 -14024076 - MER33 DNA MER1_type -38 286 1 1 1695 929 244 64 8 chr3 145575739 145576003 -14023780 + B4 SINE B4 3 281 -11 1 1695 1753 127 144 35 chr3 145576968 145577337 -14022446 + RLTR9E LTR ERVK 1 409 0 1 1695 315 0 0 0 chr3 145577983 145578018 -14021765 + (CA)n Simple_repeat Simple_repeat 1 35 0 1 1695 1149 176 53 5 chr3 145578403 145578609 -14021174 + B3 SINE B2 1 216 0 1 1695 264 132 0 0 chr3 145578649 145578659 -14021124 + (GA)n Simple_repeat Simple_repeat 1 10 0 1 1695 459 0 0 0 chr3 145578659 145578710 -14021073 + (TG)n Simple_repeat Simple_repeat 1 51 0 1 1695 264 132 0 0 chr3 145578710 145578752 -14021031 + (GA)n Simple_repeat Simple_repeat 1 42 0 1 1695 747 208 31 9 chr3 145578771 145578945 -14020838 - B3A SINE B2 -33 183 5 1 1695 1070 95 0 20 chr3 145579099 145579249 -14020534 + B1_Mus1 SINE Alu 1 147 -1 1 1695 269 212 123 12 chr3 145579947 145580028 -14019755 - MIR SINE MIR -129 133 44 1 1695 397 280 17 8 chr3 145580277 145580396 -14019387 + B1F SINE Alu 22 141 -8 1 1695 341 247 0 0 chr3 145580412 145580493 -14019290 + ID4_ SINE ID 2 82 -1 1 1695 360 0 0 0 chr3 145580899 145580939 -14018844 + (CA)n Simple_repeat Simple_repeat 2 41 0 1 1695 364 224 50 190 chr3 145581036 145581157 -14018626 + B1F SINE Alu 22 141 -8 1 1695 1865 238 16 143 chr3 145581215 145581843 -14017940 - RMER19C LTR ERVK -13 598 51 1 1695 606 286 96 0 chr3 145582287 145582465 -14017318 + B4A SINE B4 3 197 -95 1 1695 1999 213 65 45 chr3 145582541 145583047 -14016736 + RMER20A LTR ERVK 1 516 0 1 1695 670 304 136 47 chr3 145583047 145583318 -14016465 - MTE2b LTR MaLR -83 296 1 1 1695 260 341 33 66 chr3 145583319 145583343 -14016440 + B4 SINE B4 203 226 -66 1 1695 744 230 18 12 chr3 145583343 145583506 -14016277 + RSINE1 SINE B4 2 165 0 1 1695 260 341 33 66 chr3 145583506 145583572 -14016211 + B4 SINE B4 227 290 -2 1 1695 228 255 9 122 chr3 145583529 145583636 -14016147 + B3 SINE B2 118 212 -4 1 1695 331 225 44 0 chr3 145583910 145584001 -14015782 + L1M3 LINE L1 5565 5667 -511 1 1695 1407 81 0 5 chr3 145584002 145584188 -14015595 + B2_Mm2 SINE B2 1 185 -10 1 1695 617 107 8 4 chr3 145584188 145584283 -14015500 + ORR1A4 LTR MaLR 238 374 0 1 1695 226 85 0 92 chr3 145584299 145584364 -14015419 + A-rich Low_complexity Low_complexity 3 61 0 1 1695 231 284 76 43 chr3 145585035 145585127 -14014656 + L2 LINE L2 2727 2821 -598 1 1695 274 254 14 0 chr3 145585244 145585315 -14014468 + L2 LINE L2 2807 2878 -541 1 1695 407 292 9 9 chr3 145585671 145585778 -14014005 - B1F SINE Alu 0 149 43 1 1695 236 319 0 94 chr3 145585783 145585911 -14013872 + RMER30 DNA MER1_type 17 132 -70 1 1695 216 227 26 39 chr3 145587491 145587569 -14012214 + (CGGAG)n Simple_repeat Simple_repeat 5 81 0 1 1695 584 117 126 0 chr3 145588936 145589047 -14010736 - B1_Mus1 SINE Alu -20 128 4 1 1695 296 242 97 47 chr3 145589047 145589077 -14010706 - ID_B1 SINE B4 -129 95 58 1 1695 668 311 60 44 chr3 145589177 145589429 -14010354 + Tigger7 DNA MER2_type 22 277 -2214 1 1695 1274 102 26 16 chr3 145589685 145589875 -14009908 + B2_Mm2 SINE B2 1 192 -3 1 1695 208 300 122 43 chr3 145590717 145590947 -14008836 - L2 LINE L2 -1265 2154 1907 1 1695 276 322 143 24 chr3 145591191 145591401 -14008382 - MIRb SINE MIR -8 260 26 1 1695 893 263 14 0 chr3 145591417 145591626 -14008157 - B3 SINE B2 -3 213 2 1 1695 1065 45 0 0 chr3 145592092 145592225 -14007558 + B1_Mus2 SINE Alu 15 147 0 1 1695 271 233 33 22 chr3 145592537 145592629 -14007154 + L1MA5 LINE L1 6206 6298 -2 1 1695 276 53 0 0 chr3 145592679 145592717 -14007066 + (TTTTG)n Simple_repeat Simple_repeat 3 40 0 1 1695 375 41 0 0 chr3 145592797 145592846 -14006937 + (TCCC)n Simple_repeat Simple_repeat 2 50 0 1 1695 702 210 8 0 chr3 145593971 145594095 -14005688 + B1F SINE Alu 12 136 -13 1 1695 281 276 122 0 chr3 145594538 145594636 -14005147 + PB1D10 SINE Alu 2 111 -6 1 1695 265 47 0 44 chr3 145595051 145595096 -14004687 + (TCCC)n Simple_repeat Simple_repeat 3 45 0 1 1695 207 0 0 0 chr3 145595098 145595121 -14004662 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 1 1695 481 267 0 40 chr3 145595162 145595287 -14004496 + ID_B1 SINE B4 105 224 0 1 1695 817 194 122 6 chr3 145595349 145595530 -14004253 - B3 SINE B2 -6 210 9 1 1695 345 171 57 0 chr3 145595737 145595807 -14003976 + B1F1 SINE Alu 73 146 -3 1 1695 250 286 60 60 chr3 145597346 145597444 -14002339 + B1_Mur4 SINE Alu 10 114 -36 1 1695 2367 62 61 10 chr3 145597444 145597755 -14002028 - ORR1A2 LTR MaLR 0 327 1 1 1695 250 286 60 60 chr3 145597755 145597790 -14001993 + B1_Mur4 SINE Alu 115 143 -7 1 1695 286 245 310 4 chr3 145598066 145598308 -14001475 - L1MC2 LINE L1 -148 6196 5881 1 1695 285 89 0 0 chr3 145598454 145598499 -14001284 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 1695 814 281 77 18 chr3 145598520 145598792 -14000991 - B4A SINE B4 -3 289 2 1 1695 1404 68 10 54 chr3 145599272 145599304 -14000479 - B2_Mm2 SINE B2 0 195 166 1 1695 1139 77 0 0 chr3 145599304 145599447 -14000336 + B1_Mus1 SINE Alu 1 143 -5 1 1695 1404 68 10 54 chr3 145599447 145599617 -14000166 - B2_Mm2 SINE B2 -30 165 2 1 1695 418 313 71 53 chr3 145599754 145599923 -13999860 - ID_B1 SINE B4 -41 183 12 1 1695 323 291 0 0 chr3 145600525 145600604 -13999179 - B1F1 SINE Alu -70 79 1 1 1695 227 229 31 20 chr3 145601300 145601398 -13998385 + (CCCG)n Simple_repeat Simple_repeat 2 100 0 1 1695 261 316 79 107 chr3 145602165 145602203 -13997580 - B4 SINE B4 -14 278 171 1 1695 436 201 76 110 chr3 145602203 145602348 -13997435 - B1_Mur2 SINE Alu 0 149 10 1 1695 261 316 79 107 chr3 145602348 145602381 -13997402 - B4 SINE B4 -14 170 69 1 1695 309 306 62 36 chr3 145603258 145603370 -13996413 - PB1D10 SINE Alu 0 117 3 1 1695 401 264 46 0 chr3 145603287 145603374 -13996409 - ID_B1 SINE B4 -54 170 80 1 1695 765 315 23 0 chr3 145604036 145604255 -13995528 + B4 SINE B4 1 224 -68 1 1695 411 227 40 20 chr3 145604365 145604464 -13995319 - PB1D10 SINE Alu -6 111 11 1 1695 634 276 55 0 chr3 145604385 145604548 -13995235 - ID_B1 SINE B4 -50 174 3 1 1695 358 316 110 66 chr3 145604610 145604837 -13994946 - B4 SINE B4 -4 288 52 1 1695 303 290 53 11 chr3 145605606 145605700 -13994083 + B1F SINE Alu 1 98 -51 1 1695 320 269 112 28 chr3 145605838 145605945 -13993838 - PB1D7 SINE Alu -4 116 1 1 1695 996 53 45 0 chr3 145608189 145608321 -13991462 - B1_Mm SINE Alu -1 146 9 1 1695 236 288 109 89 chr3 145608321 145608385 -13991398 + YREP_Mm Unknown Unknown 171 361 -1451 1 1695 1000 81 179 6 chr3 145608677 145608839 -13990944 - B2_Mm2 SINE B2 -3 192 3 1 1695 531 170 120 43 chr3 145608842 145608959 -13990824 + B1_Mus2 SINE Alu 15 140 -7 1 1695 404 254 146 22 chr3 145608959 145608979 -13990804 + MT2B LTR ERVL 179 332 -269 1 1695 536 73 12 0 chr3 145609159 145609241 -13990542 + (TG)n Simple_repeat Simple_repeat 1 83 0 1 1695 890 86 7 0 chr3 145609981 145610132 -13989651 + (CA)n Simple_repeat Simple_repeat 2 153 0 1 1695 1061 77 14 7 chr3 145610232 145610375 -13989408 + B1_Mur4 SINE Alu 1 144 -6 1 1695 534 31 0 0 chr3 145610377 145610441 -13989342 + (GAAAA)n Simple_repeat Simple_repeat 1 64 0 1 1695 347 231 16 33 chr3 145610522 145610643 -13989140 + CT-rich Low_complexity Low_complexity 1 119 0 1 1695 1229 117 27 0 chr3 145611046 145611234 -13988549 + B2_Mm2 SINE B2 2 194 -1 1 1695 207 0 0 0 chr3 145611976 145611999 -13987784 + (GAAAA)n Simple_repeat Simple_repeat 2 24 0 1 1695 686 241 57 16 chr3 145612147 145612341 -13987442 + B3 SINE B2 1 202 -14 1 1695 437 280 68 0 chr3 145612626 145612744 -13987039 - ID_B1 SINE B4 -20 204 79 1 1695 213 39 0 0 chr3 145613033 145613059 -13986724 + (A)n Simple_repeat Simple_repeat 1 26 0 1 1695 393 260 20 0 chr3 145613530 145613630 -13986153 + B1F SINE Alu 48 149 0 1 1695 473 231 37 0 chr3 145613984 145614092 -13985691 - B1F SINE Alu -5 144 33 1 1695 375 338 30 17 chr3 145614412 145614595 -13985188 + ORR1E LTR MaLR 11 193 -191 1 1695 331 93 5 48 chr3 145615101 145615181 -13984602 + B1_Mus2 SINE Alu 73 148 -1 1 1695 193 127 18 35 chr3 145615319 145615376 -13984407 + T-rich Low_complexity Low_complexity 1 56 0 1 1695 1057 70 20 20 chr3 145615376 145615522 -13984261 - B1_Mus2 SINE Alu 0 147 2 1 1695 422 268 87 107 chr3 145615525 145615872 -13983911 - RMER10A LTR ERVL -53 389 50 2 1695 389 329 56 35 chr3 145616343 145616485 -13983298 + ID_B1 SINE B4 80 224 0 2 1695 259 262 12 24 chr3 145618141 145618223 -13981560 + MER57E2 LTR ERV1 3 83 -319 2 1695 250 306 69 92 chr3 145618277 145618450 -13981333 + MER57E2 LTR ERV1 189 357 -15 2 1695 229 247 152 33 chr3 145618600 145618651 -13981132 + B4A SINE B4 26 128 -164 2 1695 277 171 0 0 chr3 145618651 145618692 -13981091 + B1_Mus2 SINE Alu 3 43 -104 2 1695 1178 118 0 0 chr3 145618745 145618906 -13980877 + B2_Mm2 SINE B2 1 161 -34 2 1695 216 0 0 0 chr3 145618906 145618930 -13980853 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 2 1695 499 265 103 52 chr3 145619068 145619223 -13980560 + RSINE1 SINE B4 3 165 0 2 1695 21 71 0 0 chr3 145619342 145619384 -13980399 + AT_rich Low_complexity Low_complexity 1 42 0 2 1695 340 262 12 0 chr3 145619384 145619464 -13980319 - ID_B1 SINE B4 -1 223 143 2 1695 1310 116 11 0 chr3 145619465 145619655 -13980128 - B2_Mm1t SINE B2 0 193 2 2 1695 1455 222 63 63 chr3 145619713 145620029 -13979754 - ORR1D1 LTR MaLR 0 374 54 2 1695 1387 88 10 20 chr3 145620029 145620226 -13979557 + B2_Mm2 SINE B2 1 195 0 2 1695 1455 222 63 63 chr3 145620226 145620260 -13979523 - ORR1D1 LTR MaLR -321 53 24 2 1695 440 18 18 0 chr3 145620271 145620328 -13979455 + (TTTTG)n Simple_repeat Simple_repeat 3 60 0 2 1695 1123 66 0 0 chr3 145620328 145620464 -13979319 - B1_Mus1 SINE Alu -12 136 1 2 1695 339 241 14 0 chr3 145620819 145620907 -13978876 + B4 SINE B4 1 90 -202 2 211 2447 124 108 14 chr3 145620917 145621288 -13978495 - RMER6B LTR ERVK -4 457 46 2 1696 1972 138 172 76 chr3 145621288 145621695 -13978088 - RLTR41 LTR ERV1 0 446 1 2 1696 2447 124 108 14 chr3 145621695 145621741 -13978042 - RMER6B LTR ERVK -416 45 1 2 1696 460 305 112 7 chr3 145621775 145621927 -13977856 + B4A SINE B4 125 292 0 2 1696 1178 69 0 0 chr3 145622031 145622176 -13977607 + B1_Mus1 SINE Alu 4 148 0 2 1696 222 37 0 0 chr3 145622176 145622203 -13977580 + (GAAAA)n Simple_repeat Simple_repeat 4 30 0 2 1696 306 0 0 0 chr3 145622203 145622237 -13977546 + (GGGGA)n Simple_repeat Simple_repeat 2 35 0 2 1696 948 178 0 0 chr3 145622240 145622420 -13977363 + GA-rich Low_complexity Low_complexity 1 180 0 2 1696 462 36 0 0 chr3 145622771 145622827 -13976956 + (CA)n Simple_repeat Simple_repeat 2 57 0 2 1696 343 247 20 20 chr3 145622846 145622945 -13976838 + L1M2 LINE L1 4734 4832 -1311 2 1696 540 284 81 17 chr3 145623189 145623361 -13976422 + MTEa LTR MaLR 3 185 -194 2 1696 267 235 14 144 chr3 145623381 145623520 -13976263 - MT2B LTR ERVL -304 297 177 2 1696 475 195 50 50 chr3 145623417 145623536 -13976247 - B1_Mus1 SINE Alu -29 119 1 2 1696 329 274 58 66 chr3 145623449 145623545 -13976238 - B4 SINE B4 -120 172 80 2 1696 924 36 0 0 chr3 145623545 145623657 -13976126 + (TTC)n Simple_repeat Simple_repeat 2 113 0 2 1696 329 274 58 66 chr3 145623657 145623697 -13976086 - B4 SINE B4 -213 79 37 2 1696 192 40 0 0 chr3 145623717 145623742 -13976041 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 2 1696 1336 90 17 0 chr3 145623756 145623934 -13975849 + B2_Mm2 SINE B2 1 181 -14 2 1696 2136 134 24 68 chr3 145624016 145624431 -13975352 - RMER10B LTR ERVL 0 398 2 2 1696 625 224 63 42 chr3 145625015 145625206 -13974577 + B2_Mm2 SINE B2 1 195 0 2 1696 180 0 0 0 chr3 145625222 145625242 -13974541 + (CAAAA)n Simple_repeat Simple_repeat 3 22 0 2 1696 584 331 13 111 chr3 145625247 145625544 -13974239 - B4A SINE B4 -11 281 15 2 1696 1649 134 135 14 chr3 145625544 145625907 -13973876 + RMER17C LTR ERVK 1 407 -3 2 1696 358 242 188 10 chr3 145625952 145626048 -13973735 - B1F SINE Alu 0 149 37 2 1696 515 243 34 114 chr3 145626071 145626308 -13973475 - ID_B1 SINE B4 -3 221 4 2 1696 1335 140 9 18 chr3 145626828 145627054 -13972729 - URR1A DNA MER1_type 0 226 3 2 1696 6706 93 34 40 chr3 145627934 145628623 -13971160 - Lx LINE L1 0 6654 5971 2 1696 1334 111 16 0 chr3 145628623 145628813 -13970970 - B2_Mm2 SINE B2 -1 194 2 2 1696 6706 93 34 40 chr3 145628813 145629145 -13970638 - Lx LINE L1 -684 5970 5639 2 1696 1505 23 40 0 chr3 145629417 145629590 -13970193 - B2_Mm2 SINE B2 -14 181 2 2 1696 376 243 68 0 chr3 145630210 145630284 -13969499 - PB1D7 SINE Alu -7 113 35 2 1696 402 250 65 0 chr3 145630354 145630446 -13969337 - ID_B1 SINE B4 -17 207 110 2 1696 1212 98 40 6 chr3 145630555 145630730 -13969053 - B2_Mm2 SINE B2 0 195 15 2 1696 456 160 290 0 chr3 145630741 145630841 -13968942 - B1_Mus1 SINE Alu -19 129 1 2 1696 225 0 0 0 chr3 145631124 145631149 -13968634 + (TTCA)n Simple_repeat Simple_repeat 2 26 0 2 1696 1588 37 21 0 chr3 145631208 145631396 -13968387 + B2_Mm1t SINE B2 2 193 0 2 1696 326 314 24 41 chr3 145631409 145631532 -13968251 + L1MC4a LINE L1 6560 6680 -1202 2 1696 308 304 50 21 chr3 145631454 145631595 -13968188 - L1MCa LINE L1 -4549 1959 1815 2 1696 747 221 49 190 chr3 145631739 145631785 -13967998 - MTE2b LTR MaLR 0 379 339 2 1696 1184 69 0 0 chr3 145631785 145631930 -13967853 + B1_Mus1 SINE Alu 2 146 -2 2 1696 747 221 49 190 chr3 145631930 145632252 -13967531 - MTE2b LTR MaLR -41 338 63 2 1696 587 197 45 52 chr3 145632430 145632564 -13967219 + RSINE1 SINE B4 4 136 -29 2 1696 356 296 72 31 chr3 145632617 145632773 -13967010 + MLT1A0 LTR MaLR 164 356 -34 2 1696 243 0 0 0 chr3 145632773 145632800 -13966983 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2 1696 281 235 154 58 chr3 145632800 145632830 -13966953 + MLT1A0 LTR MaLR 357 386 -4 2 1696 249 33 0 0 chr3 145633013 145633043 -13966740 + (TAAA)n Simple_repeat Simple_repeat 3 32 0 2 1696 545 239 90 14 chr3 145633063 145633207 -13966576 - Lx5 LINE L1 -35 7015 6861 2 1696 490 162 171 0 chr3 145633234 145633339 -13966444 + B1_Mus2 SINE Alu 16 138 -9 2 1696 2604 155 228 26 chr3 145633794 145634365 -13965418 + RLTR33 LTR ERVK 8 678 0 2 1696 226 245 19 0 chr3 145634933 145634986 -13964797 + CT-rich Low_complexity Low_complexity 4 57 0 2 1696 790 184 14 0 chr3 145635226 145635367 -13964416 + B1_Mus2 SINE Alu 5 147 0 2 1696 270 0 0 0 chr3 145635370 145635400 -13964383 + (CAAA)n Simple_repeat Simple_repeat 1 30 0 2 1696 221 139 23 0 chr3 145635420 145635463 -13964320 + A-rich Low_complexity Low_complexity 4 47 0 2 1696 302 346 58 47 chr3 145635466 145635673 -13964110 + MIRb SINE MIR 42 259 -3 2 1696 753 199 0 8 chr3 145636134 145636266 -13963517 - B1_Mur3 SINE Alu -5 144 14 2 1696 735 223 58 69 chr3 145636288 145636476 -13963307 - B3 SINE B2 -28 188 3 2 1696 2218 78 18 55 chr3 145636480 145636757 -13963026 + ORR1A2 LTR MaLR 5 285 -42 2 1696 1565 42 5 20 chr3 145636757 145636953 -13962830 + B2_Mm1a SINE B2 1 193 0 2 1696 2218 78 18 55 chr3 145636953 145637002 -13962781 + ORR1A2 LTR MaLR 286 319 -8 2 1696 337 348 145 0 chr3 145637015 145637222 -13962561 - L1MD2 LINE L1 -5547 1000 764 2 1696 225 214 0 0 chr3 145637342 145637384 -13962399 - L1MD2 LINE L1 -5977 570 529 2 1696 912 289 146 8 chr3 145637551 145637890 -13961893 + MTEa LTR MaLR 3 379 0 2 1696 22 0 0 0 chr3 145638523 145638545 -13961238 + AT_rich Low_complexity Low_complexity 1 22 0 2 1696 27 73 0 0 chr3 145639288 145639343 -13960440 + AT_rich Low_complexity Low_complexity 1 55 0 2 1696 864 229 32 0 chr3 145639457 145639645 -13960138 + B3A SINE B2 3 196 -2 2 1696 741 233 26 75 chr3 145639670 145639897 -13959886 + B3 SINE B2 1 216 0 2 1696 1706 99 19 39 chr3 145640664 145640992 -13958791 - ORR1A2 LTR MaLR 0 346 43 2 1696 1601 192 57 147 chr3 145641005 145641771 -13958012 - RMER17B LTR ERVK -9 899 244 2 1696 863 102 47 0 chr3 145641779 145641907 -13957876 + ORR1C1 LTR MaLR 245 378 0 2 1696 496 232 21 0 chr3 145641907 145642000 -13957783 + RSINE1 SINE B4 42 136 -29 2 1696 200 34 0 33 chr3 145642901 145642931 -13956852 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2 1696 2224 118 22 67 chr3 145643347 145643718 -13956065 + ORR1C1 LTR MaLR 25 378 0 2 1696 205 225 137 27 chr3 145643881 145643954 -13955829 - L2 LINE L2 -2184 1235 1155 2 1696 528 191 79 35 chr3 145644118 145644232 -13955551 + PB1D9 SINE Alu 2 120 0 2 1696 294 279 136 0 chr3 145644520 145644613 -13955170 + PB1D9 SINE Alu 8 111 -9 2 1696 391 325 8 0 chr3 145644664 145644787 -13954996 - RMER30 DNA MER1_type -78 124 1 2 1696 269 249 155 35 chr3 145645151 145645351 -13954432 - L1MC5 LINE L1 -51 7910 7687 2 1696 529 260 31 0 chr3 145645364 145645491 -13954292 + B1F SINE Alu 5 135 -14 2 1696 243 173 56 37 chr3 145645474 145645528 -13954255 + PB1D7 SINE Alu 61 115 -5 2 1696 457 290 58 93 chr3 145645600 145645805 -13953978 + B3A SINE B2 1 198 0 2 1696 235 183 475 0 chr3 145645823 145645903 -13953880 + PB1D9 SINE Alu 2 119 -1 2 1696 201 129 0 0 chr3 145645903 145645934 -13953849 + (CCAA)n Simple_repeat Simple_repeat 4 34 0 2 1696 198 143 0 0 chr3 145645971 145646006 -13953777 + (TAAAA)n Simple_repeat Simple_repeat 2 36 0 2 1696 447 218 11 22 chr3 145646083 145646172 -13953611 + ID_B1 SINE B4 129 216 -8 2 1696 795 267 94 50 chr3 145646206 145646569 -13953214 + MTEa LTR MaLR 1 379 0 2 1696 478 302 68 63 chr3 145647925 145648116 -13951667 - ID_B1 SINE B4 -31 193 2 2 1696 567 173 0 0 chr3 145648285 145648424 -13951359 + (TG)n Simple_repeat Simple_repeat 1 139 0 2 1696 538 146 52 12 chr3 145649079 145649252 -13950531 + (TG)n Simple_repeat Simple_repeat 1 180 0 2 1696 180 301 25 99 chr3 145649804 145649885 -13949898 - MIRm SINE MIR -1 275 201 2 1696 603 192 0 39 chr3 145650300 145650469 -13949314 - B3 SINE B2 0 216 1 2 1696 24 85 0 0 chr3 145650886 145650945 -13948838 + GC_rich Low_complexity Low_complexity 1 59 0 2 1696 1390 145 9 0 chr3 145652185 145652406 -13947377 - URR1B DNA MER1_type -2 223 1 2 1696 360 0 0 0 chr3 145652868 145652908 -13946875 + (TC)n Simple_repeat Simple_repeat 2 41 0 3 1696 569 187 0 9 chr3 145653295 145653403 -13946380 + PB1D9 SINE Alu 1 107 -13 3 1696 213 39 0 0 chr3 145653637 145653663 -13946120 + (CTA)n Simple_repeat Simple_repeat 2 27 0 3 1696 25 0 0 0 chr3 145653863 145653888 -13945895 + AT_rich Low_complexity Low_complexity 1 25 0 3 1696 1720 21 0 0 chr3 145653888 145654079 -13945704 - B2_Mm1t SINE B2 -1 192 2 3 1696 422 248 88 44 chr3 145655242 145655356 -13944427 - ID_B1 SINE B4 -105 119 1 3 1696 285 250 115 39 chr3 145655392 145655496 -13944287 - PB1D9 SINE Alu -7 113 2 3 1696 321 26 0 0 chr3 145655535 145655573 -13944210 + (TC)n Simple_repeat Simple_repeat 1 38 0 3 1696 524 170 0 11 chr3 145655610 145655705 -13944078 - B3 SINE B2 -112 104 11 3 1696 367 266 139 7 chr3 145656159 145656303 -13943480 - MER5A1 DNA MER1_type -3 163 1 3 1696 1269 94 10 8 chr3 145656401 145656589 -13943194 - B2_Mm2 SINE B2 -25 191 2 3 1696 204 125 0 0 chr3 145657223 145657255 -13942528 + (TTTTC)n Simple_repeat Simple_repeat 4 35 0 3 1696 1206 68 0 0 chr3 145657255 145657403 -13942380 - B1_Mus1 SINE Alu 0 148 1 3 1696 1263 94 0 0 chr3 145657414 145657594 -13942189 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 3 1696 271 143 0 0 chr3 145658084 145658126 -13941657 + B4A SINE B4 189 230 -62 3 1696 502 235 98 76 chr3 145658126 145658310 -13941473 + B3A SINE B2 2 189 -9 3 1696 25 51 0 0 chr3 145658808 145658847 -13940936 + AT_rich Low_complexity Low_complexity 1 39 0 3 1696 870 148 35 0 chr3 145658847 145658989 -13940794 - B1_Mus2 SINE Alu 0 147 1 3 1696 746 239 37 0 chr3 145658990 145659178 -13940605 - B3A SINE B2 -3 195 1 3 1696 1113 149 21 5 chr3 145659903 145660092 -13939691 + URR1B DNA MER1_type 34 225 0 3 1696 1204 61 0 0 chr3 145660350 145660498 -13939285 + B1_Mus1 SINE Alu 1 148 0 3 1696 22 56 0 0 chr3 145660842 145660878 -13938905 + AT_rich Low_complexity Low_complexity 1 36 0 3 1696 822 26 256 0 chr3 145661220 145661337 -13938446 - B1_Mus1 SINE Alu 0 148 2 3 1696 563 205 45 83 chr3 145662196 145662329 -13937454 + B3A SINE B2 2 129 -69 3 1696 458 75 0 15 chr3 145662982 145663050 -13936733 + (CA)n Simple_repeat Simple_repeat 2 68 0 3 1696 22 0 0 0 chr3 145663384 145663406 -13936377 + AT_rich Low_complexity Low_complexity 1 22 0 3 1696 252 0 0 0 chr3 145663419 145663447 -13936336 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 3 1696 1216 54 7 0 chr3 145663463 145663610 -13936173 + B1_Mus1 SINE Alu 1 148 0 3 1696 21 0 0 0 chr3 145663632 145663653 -13936130 + AT_rich Low_complexity Low_complexity 1 21 0 3 1696 228 182 0 0 chr3 145665496 145665540 -13934243 + (CACCAT)n Simple_repeat Simple_repeat 1 44 0 3 1696 868 212 91 20 chr3 145665921 145666118 -13933665 - B3 SINE B2 0 216 6 3 1696 786 157 212 6 chr3 145666570 145666749 -13933034 + B3 SINE B2 1 216 0 3 1696 34 20 0 19 chr3 145666749 145666760 -13933023 + AT_rich Low_complexity Low_complexity 1 11 0 3 1696 1264 34 0 0 chr3 145666760 145666907 -13932876 + B1_Mm SINE Alu 1 147 0 3 1696 34 20 0 19 chr3 145666907 145666947 -13932836 + AT_rich Low_complexity Low_complexity 1 40 0 3 1696 437 214 226 15 chr3 145666963 145667096 -13932687 + RSINE1 SINE B4 3 163 -2 3 1696 258 56 0 0 chr3 145667175 145667211 -13932572 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 3 1696 351 227 0 0 chr3 145667222 145667288 -13932495 - ID_B1 SINE B4 -46 178 113 3 1696 469 182 209 0 chr3 145667320 145667430 -13932353 + B3A SINE B2 1 133 -65 3 1696 297 0 0 0 chr3 145667446 145667479 -13932304 + (CA)n Simple_repeat Simple_repeat 2 34 0 3 1696 809 247 51 0 chr3 145667499 145667677 -13932106 + B3 SINE B2 2 188 -28 3 1696 1090 36 14 0 chr3 145668182 145668321 -13931462 - B1_Mm SINE Alu 0 147 7 3 1696 544 212 32 135 chr3 145668184 145668369 -13931414 - B4 SINE B4 -69 223 58 3 1696 360 0 0 0 chr3 145668566 145668606 -13931177 + (TG)n Simple_repeat Simple_repeat 2 41 0 3 1696 257 224 30 0 chr3 145668748 145668815 -13930968 - B3 SINE B2 -5 211 143 3 1696 242 375 0 18 chr3 145669406 145669520 -13930263 + YREP_Mm Unknown Unknown 184 295 -1517 3 1696 716 216 47 13 chr3 145669419 145669569 -13930214 - ID_B1 SINE B4 -21 203 49 3 1696 468 260 0 20 chr3 145670610 145670708 -13929075 - PB1D10 SINE Alu -12 105 10 3 1696 375 23 0 0 chr3 145671008 145671052 -13928731 + (TG)n Simple_repeat Simple_repeat 2 45 0 3 1696 2126 109 38 3 chr3 145671140 145671454 -13928329 - ORR1A2 LTR MaLR 0 327 3 3 1696 214 196 20 0 chr3 145671994 145672045 -13927738 + T-rich Low_complexity Low_complexity 4 55 0 3 1696 1259 34 0 0 chr3 145672045 145672191 -13927592 - B1_Mus2 SINE Alu 0 147 2 3 1696 660 148 0 18 chr3 145672196 145672306 -13927477 - B1_Mur2 SINE Alu -1 148 41 3 1696 486 0 0 0 chr3 145672866 145672920 -13926863 + (GGGA)n Simple_repeat Simple_repeat 1 54 0 3 1696 347 300 35 52 chr3 145673304 145673420 -13926363 - PB1D10 SINE Alu -1 116 3 3 1696 236 139 0 0 chr3 145673719 145673755 -13926028 - L1ME1 LINE L1 -11 6168 6133 3 1696 527 234 159 6 chr3 145673756 145673932 -13925851 - B3 SINE B2 -13 203 1 3 1696 422 263 107 17 chr3 145673971 145674149 -13925634 - L1M4 LINE L1 -1353 4793 4600 3 1696 431 217 200 5 chr3 145674242 145674427 -13925356 - L1M4 LINE L1 -1535 4611 4391 3 1696 479 0 0 53 chr3 145674448 145674523 -13925260 + (TTCTC)n Simple_repeat Simple_repeat 5 75 0 3 1696 180 176 0 0 chr3 145674526 145674560 -13925223 + C-rich Low_complexity Low_complexity 1 34 0 3 1696 216 0 0 0 chr3 145675020 145675044 -13924739 + (T)n Simple_repeat Simple_repeat 1 24 0 3 1696 950 87 0 0 chr3 145675334 145675461 -13924322 - B2_Mm1t SINE B2 0 193 67 3 1696 459 113 0 0 chr3 145675580 145675651 -13924132 + (TG)n Simple_repeat Simple_repeat 1 71 0 3 1696 203 0 37 0 chr3 145675674 145675701 -13924082 + (TC)n Simple_repeat Simple_repeat 1 28 0 3 1696 459 92 0 0 chr3 145675701 145675765 -13924018 + (CA)n Simple_repeat Simple_repeat 1 65 0 3 1696 306 0 0 0 chr3 145676042 145676076 -13923707 + (TTAGGG)n Simple_repeat Simple_repeat 6 39 0 3 1696 462 192 44 124 chr3 145676238 145676254 -13923529 + MT2B LTR ERVL 153 157 -444 3 1696 982 84 35 0 chr3 145676254 145676397 -13923386 + B1_Mus1 SINE Alu 1 148 0 3 1696 689 183 8 22 chr3 145676521 145676655 -13923128 - B1_Mur3 SINE Alu -15 134 3 3 1696 769 203 35 96 chr3 145677612 145677841 -13921942 - B3 SINE B2 0 216 2 3 1696 43 35 0 0 chr3 145677868 145677925 -13921858 + AT_rich Low_complexity Low_complexity 1 57 0 3 1696 215 359 112 32 chr3 145679003 145679190 -13920593 + MIRb SINE MIR 38 239 -29 3 1696 504 246 114 23 chr3 145679275 145679450 -13920333 - B3A SINE B2 -6 192 2 3 1696 862 223 67 0 chr3 145679547 145679740 -13920043 + B3 SINE B2 1 206 -10 3 1696 268 289 147 7 chr3 145679778 145679921 -13919862 - RSINE1 SINE B4 0 165 3 3 1696 662 263 42 10 chr3 145679985 145680177 -13919606 - B3 SINE B2 -17 199 2 3 1696 426 228 11 11 chr3 145681550 145681643 -13918140 + B3 SINE B2 117 209 -7 3 1696 205 29 59 0 chr3 145683331 145683365 -13916418 + (TA)n Simple_repeat Simple_repeat 2 37 0 3 1696 22 0 0 0 chr3 145683782 145683804 -13915979 + AT_rich Low_complexity Low_complexity 1 22 0 3 1696 735 194 43 0 chr3 145684727 145684866 -13914917 - B1_Mur3 SINE Alu -2 147 3 3 1696 225 0 0 0 chr3 145685066 145685091 -13914692 + (T)n Simple_repeat Simple_repeat 1 25 0 3 1696 301 228 32 2 chr3 145685208 145685287 -13914496 - RSINE1 SINE B4 -197 95 15 3 1696 220 183 66 16 chr3 145685673 145685734 -13914049 - L2 LINE L2 -767 2652 2589 3 1696 716 161 80 0 chr3 145685754 145685891 -13913892 + B1_Mur2 SINE Alu 2 149 0 3 1696 324 0 0 0 chr3 145685975 145686011 -13913772 + (CA)n Simple_repeat Simple_repeat 2 37 0 3 1696 371 185 0 0 chr3 145686240 145686305 -13913478 + PB1D9 SINE Alu 49 113 -7 3 1696 1122 88 0 0 chr3 145686791 145686938 -13912845 - B1_Mus2 SINE Alu 0 147 1 3 1696 544 168 9 18 chr3 145687037 145687146 -13912637 - URR1B DNA MER1_type -7 218 111 3 1696 1440 219 105 12 chr3 145687645 145687968 -13911815 - ORR1D2 LTR MaLR -1 369 17 3 1696 518 259 84 45 chr3 145687978 145688096 -13911687 + RSINE1 SINE B4 4 128 -37 3 1696 2315 145 76 28 chr3 145688096 145688530 -13911253 + RMER6B LTR ERVK 3 457 -4 3 1696 518 259 84 45 chr3 145688530 145688565 -13911218 + RSINE1 SINE B4 129 162 -3 3 1696 182 341 43 85 chr3 145688640 145688781 -13911002 + L2a LINE L2 3272 3406 -20 3 1696 1175 56 31 0 chr3 145688851 145689013 -13910770 + L1Md_F2 LINE L1 6412 6578 -4 3 1696 1471 39 55 0 chr3 145689044 145689226 -13910557 - B2_Mm1a SINE B2 0 193 2 3 1696 1185 48 14 0 chr3 145689263 145689408 -13910375 + B1_Mm SINE Alu 1 147 0 3 1696 252 0 0 0 chr3 145689438 145689466 -13910317 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 3 1696 376 225 324 8 chr3 145689479 145689621 -13910162 + B3A SINE B2 1 187 -11 3 1696 22 0 0 0 chr3 145689773 145689795 -13909988 + AT_rich Low_complexity Low_complexity 1 22 0 3 1696 389 216 270 13 chr3 145690528 145690687 -13909096 - RMER15 LTR ERVL -15 560 361 3 1696 654 239 127 5 chr3 145691020 145691172 -13908611 + B3 SINE B2 3 175 -41 3 1696 192 77 0 0 chr3 145691172 145691198 -13908585 + (CATA)n Simple_repeat Simple_repeat 2 27 0 4 1696 654 239 127 5 chr3 145691198 145691234 -13908549 + B3 SINE B2 176 214 -2 3 1696 820 209 7 0 chr3 145691267 145691415 -13908368 - B1_Mur2 SINE Alu 0 149 1 4 1696 1961 173 24 24 chr3 145691468 145691887 -13907896 + ORR1B2 LTR MaLR 1 378 0 4 1696 341 218 167 0 chr3 145691887 145691963 -13907820 + RSINE1 SINE B4 22 110 -55 4 1696 321 26 0 0 chr3 145691969 145692007 -13907776 + (CA)n Simple_repeat Simple_repeat 1 38 0 4 1696 301 208 125 38 chr3 145692419 145692499 -13907284 + B2_Mm2 SINE B2 2 88 -107 4 1696 2604 137 66 6 chr3 145692490 145692872 -13906911 + RLTR16 LTR ERVK 7 413 -92 4 1696 402 85 0 0 chr3 145692872 145692931 -13906852 + (TG)n Simple_repeat Simple_repeat 2 60 0 4 1696 2604 137 66 6 chr3 145692931 145693019 -13906764 + RLTR16 LTR ERVK 414 504 -1 4 1696 259 265 131 10 chr3 145693853 145693952 -13905831 - PB1D7 SINE Alu -9 111 1 4 1696 24 0 0 0 chr3 145693960 145693984 -13905799 + AT_rich Low_complexity Low_complexity 1 24 0 4 1696 655 149 103 0 chr3 145694023 145694130 -13905653 + B1_Mus2 SINE Alu 18 135 -12 4 1696 275 246 0 0 chr3 145694486 145694555 -13905228 + L1M4 LINE L1 4958 5026 -1120 4 1696 634 158 87 48 chr3 145694560 145694686 -13905097 + B1_Mus2 SINE Alu 1 131 -16 4 1696 936 217 24 33 chr3 145694823 145695033 -13904750 + B3 SINE B2 2 209 -7 4 1696 431 243 35 61 chr3 145695106 145695220 -13904563 + RSINE1 SINE B4 1 111 -54 4 1696 24 53 0 0 chr3 145695863 145695901 -13903882 + AT_rich Low_complexity Low_complexity 1 38 0 4 1696 2059 246 7 2 chr3 145695980 145696411 -13903372 - Lx6 LINE L1 -27 7433 7001 4 1696 1210 55 0 7 chr3 145696450 145696598 -13903185 - B1_Mm SINE Alu 0 147 1 4 1696 470 307 72 43 chr3 145696695 145696930 -13902853 + MLT1D LTR MaLR 1 242 -263 4 1696 355 305 52 30 chr3 145696981 145697116 -13902667 + MLT1D LTR MaLR 344 481 -24 4 1696 302 252 76 59 chr3 145697127 145697245 -13902538 + L1ME3 LINE L1 6016 6135 -27 4 1696 1315 91 21 5 chr3 145697649 145697836 -13901947 - B2_Mm2 SINE B2 -4 191 2 4 1696 261 0 0 0 chr3 145698540 145698569 -13901214 + (T)n Simple_repeat Simple_repeat 1 29 0 4 1696 221 114 96 48 chr3 145698656 145698739 -13901044 + (CAGGG)n Simple_repeat Simple_repeat 5 91 0 4 1696 275 273 79 11 chr3 145699279 145699368 -13900415 - MLT1J2 LTR MaLR -257 191 97 4 1696 360 274 143 82 chr3 145700101 145700235 -13899548 + B4A SINE B4 12 148 -144 4 1696 612 0 0 0 chr3 145700235 145700303 -13899480 + (GA)n Simple_repeat Simple_repeat 1 68 0 4 1696 360 274 143 82 chr3 145700303 145700399 -13899384 + B4A SINE B4 149 256 -36 4 1696 244 312 16 31 chr3 145700433 145700562 -13899221 + (CA)n Simple_repeat Simple_repeat 1 127 0 4 1696 417 39 0 0 chr3 145700582 145700633 -13899150 + (CA)n Simple_repeat Simple_repeat 1 51 0 4 1696 528 16 0 0 chr3 145701443 145701504 -13898279 + (GA)n Simple_repeat Simple_repeat 2 62 0 4 1696 215 322 0 0 chr3 145701683 145701770 -13898013 + G-rich Low_complexity Low_complexity 1 87 0 4 1696 727 151 324 8 chr3 145702730 145702984 -13896799 + ORR1D1 LTR MaLR 1 333 -41 4 1696 378 260 201 28 chr3 145702989 145703238 -13896545 - L1M5 LINE L1 -2121 4025 3734 4 1696 1001 194 63 50 chr3 145704009 145704231 -13895552 - URR1B DNA MER1_type 0 225 1 4 1696 258 330 57 28 chr3 145705040 145705146 -13894637 - MIRb SINE MIR -66 202 94 4 1696 374 221 200 62 chr3 145705340 145705485 -13894298 + RSINE1 SINE B4 1 165 0 4 1696 198 0 0 0 chr3 145705858 145705880 -13893903 + (CCCG)n Simple_repeat Simple_repeat 1 22 0 4 1696 967 195 60 30 chr3 145706024 145706225 -13893558 - URR1B DNA MER1_type 0 225 19 4 1696 39 60 0 0 chr3 145707094 145707161 -13892622 + AT_rich Low_complexity Low_complexity 1 67 0 4 1696 463 106 0 12 chr3 145707241 145707327 -13892456 + Lx3_Mus LINE L1 6917 7001 -8 4 1696 1167 82 0 0 chr3 145707352 145707499 -13892284 + B1_Mus2 SINE Alu 1 147 0 4 1696 471 274 72 29 chr3 145707551 145707690 -13892093 + RSINE1 SINE B4 4 148 -17 4 1696 1209 61 0 0 chr3 145708647 145708794 -13890989 + B1_Mus1 SINE Alu 2 148 0 4 1696 252 333 31 8 chr3 145709259 145709389 -13890394 + GA-rich Low_complexity Low_complexity 3 135 0 4 1696 240 35 0 0 chr3 145709823 145709852 -13889931 + (C)n Simple_repeat Simple_repeat 1 29 0 4 1696 252 336 56 56 chr3 145709853 145709979 -13889804 - RSINE1 SINE B4 -35 130 5 4 1696 229 109 21 21 chr3 145710014 145710061 -13889722 + CT-rich Low_complexity Low_complexity 1 47 0 4 1696 248 313 51 29 chr3 145711328 145711466 -13888317 - L2b LINE L2 -13 3413 3238 4 1696 229 288 82 76 chr3 145711818 145711976 -13887807 - L2b LINE L2 -602 2817 2659 4 1696 317 289 110 7 chr3 145712451 145712587 -13887196 + L1M3 LINE L1 5657 5806 -365 4 1696 289 161 145 0 chr3 145712593 145712655 -13887128 + B3 SINE B2 2 72 -144 4 1696 695 292 150 25 chr3 145713106 145713380 -13886403 + RMER5 LTR ERV1 218 525 -9 4 1696 22 0 0 0 chr3 145713380 145713402 -13886381 + AT_rich Low_complexity Low_complexity 1 22 0 4 1696 198 71 0 0 chr3 145714194 145714222 -13885561 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 4 1696 351 65 0 0 chr3 145714489 145714535 -13885248 + (TTTTG)n Simple_repeat Simple_repeat 2 47 0 4 1696 201 318 48 0 chr3 145714733 145714796 -13884987 + MIRb SINE MIR 165 230 -38 4 1696 477 0 0 0 chr3 145714983 145715036 -13884747 + (TTTTG)n Simple_repeat Simple_repeat 3 55 0 4 1696 222 37 0 0 chr3 145715092 145715119 -13884664 + (TGGG)n Simple_repeat Simple_repeat 1 27 0 4 1696 201 178 5 84 chr3 145715144 145715334 -13884449 + CT-rich Low_complexity Low_complexity 3 177 0 4 1696 265 179 64 64 chr3 145715336 145715461 -13884322 + (TCTCTG)n Simple_repeat Simple_repeat 2 126 0 4 1696 576 182 0 17 chr3 145715466 145715702 -13884081 + CT-rich Low_complexity Low_complexity 1 231 0 4 1696 212 359 0 13 chr3 145716368 145716447 -13883336 + L2c LINE L2 3049 3126 -261 4 1696 420 308 83 54 chr3 145716885 145717125 -13882658 + Lx8 LINE L1 6964 7210 -263 4 1696 386 338 93 11 chr3 145717133 145717402 -13882381 + Lx8 LINE L1 7155 7445 -28 4 1696 562 243 21 29 chr3 145718248 145718388 -13881395 - ID_B1 SINE B4 -85 139 1 4 1696 771 302 5 0 chr3 145719103 145719308 -13880475 + B3 SINE B2 1 206 -10 4 1696 430 310 51 13 chr3 145719473 145719630 -13880153 - RSINE1 SINE B4 0 165 3 4 1696 240 329 132 40 chr3 145719790 145720018 -13879765 - MIR SINE MIR -6 256 8 4 1696 3624 193 128 8 chr3 145720111 145720843 -13878940 + Lx7 LINE L1 6427 7246 -450 4 1696 222 62 20 59 chr3 145720879 145720930 -13878853 + (TTTTG)n Simple_repeat Simple_repeat 2 50 0 4 1696 1122 82 104 17 chr3 145721704 145721877 -13877906 + B2_Mm2 SINE B2 1 188 -7 4 1696 231 282 116 101 chr3 145722005 145722063 -13877720 + L2a LINE L2 3284 3338 -88 4 1696 517 231 153 40 chr3 145722063 145722239 -13877544 - B3A SINE B2 -2 196 1 4 1696 231 282 116 101 chr3 145722239 145722318 -13877465 + L2a LINE L2 3339 3423 -3 4 1696 260 333 13 32 chr3 145722395 145722550 -13877233 + L1MD LINE L1 2449 2600 -3546 4 1696 521 361 50 83 chr3 145722553 145722952 -13876831 + Tigger7 DNA MER2_type 25 410 -2081 4 1696 258 105 0 0 chr3 145723354 145723392 -13876391 + (TG)n Simple_repeat Simple_repeat 1 38 0 4 1696 1031 152 0 50 chr3 145723392 145723593 -13876190 + Lx4A LINE L1 6868 7058 0 4 1696 24 0 0 0 chr3 145723596 145723620 -13876163 + AT_rich Low_complexity Low_complexity 1 24 0 4 1696 643 277 28 91 chr3 145724044 145724134 -13875649 - Lx8 LINE L1 0 7473 7400 4 1696 1973 208 39 15 chr3 145724134 145724544 -13875239 - MTC LTR MaLR 0 421 2 4 1696 643 277 28 91 chr3 145724544 145724739 -13875044 - Lx8 LINE L1 -74 7399 7206 4 1696 223 378 0 48 chr3 145724775 145724878 -13874905 + PB1 SINE Alu 11 108 -19 4 1696 338 61 20 0 chr3 145726084 145726133 -13873650 + (TGAA)n Simple_repeat Simple_repeat 4 53 0 4 1696 558 274 19 45 chr3 145726598 145726775 -13873008 - B3A SINE B2 -18 198 34 4 1696 207 0 0 0 chr3 145726783 145726806 -13872977 + (CCCCG)n Simple_repeat Simple_repeat 2 24 0 4 1696 202 61 61 0 chr3 145727092 145727125 -13872658 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 4 1696 662 209 6 69 chr3 145727127 145727286 -13872497 - B1_Mur2 SINE Alu 0 149 1 4 1696 320 323 10 50 chr3 145727293 145727394 -13872389 - PB1D10 SINE Alu 0 117 21 4 1696 355 231 155 95 chr3 145727800 145727948 -13871835 - RSINE1 SINE B4 0 165 9 4 1696 588 216 10 15 chr3 145727994 145728128 -13871655 - B1_Mur1 SINE Alu -1 148 14 4 1696 277 212 14 43 chr3 145728396 145728465 -13871318 - Lx8 LINE L1 -716 6757 6691 4 1696 1123 244 121 45 chr3 145729016 145729346 -13870437 + MTD LTR MaLR 51 405 -14 4 1696 952 235 13 18 chr3 145729419 145729644 -13870139 + ID_B1 SINE B4 1 224 0 4 1696 380 201 2 91 chr3 145729663 145729775 -13870008 + B3 SINE B2 3 106 -89 4 1696 1452 60 11 5 chr3 145730078 145730262 -13869521 + B2_Mm2 SINE B2 2 186 -9 4 1696 2098 181 36 23 chr3 145730282 145730723 -13869060 + RLTR31_Mur LTR ERVK 1 447 -106 4 1696 426 20 0 0 chr3 145730758 145730809 -13868974 + (TC)n Simple_repeat Simple_repeat 1 51 0 4 1696 21 57 0 0 chr3 145731044 145731079 -13868704 + AT_rich Low_complexity Low_complexity 1 35 0 4 1696 573 297 45 0 chr3 145731085 145731240 -13868543 - RSINE1 SINE B4 -1 164 3 4 1696 669 271 61 22 chr3 145732676 145732857 -13866926 - ID_B1 SINE B4 0 224 37 4 1696 684 244 41 32 chr3 145733201 145733413 -13866370 + MTD LTR MaLR 6 202 -217 4 1696 870 156 0 7 chr3 145734140 145734282 -13865501 - B1_Mus2 SINE Alu -6 141 1 4 1696 636 221 14 0 chr3 145734435 145734575 -13865208 - B1_Mus1 SINE Alu -5 143 2 4 1696 271 260 27 0 chr3 145734738 145734811 -13864972 + (TG)n Simple_repeat Simple_repeat 2 76 0 4 1696 440 212 8 0 chr3 145734824 145734956 -13864827 + (TG)n Simple_repeat Simple_repeat 2 134 0 4 1696 643 266 58 54 chr3 145734972 145735214 -13864569 - B4A SINE B4 -8 284 42 5 1696 360 148 0 0 chr3 145735356 145735417 -13864366 + (GGGAGA)n Simple_repeat Simple_repeat 1 61 0 5 1696 202 209 0 0 chr3 145735749 145735792 -13863991 + (TG)n Simple_repeat Simple_repeat 2 44 0 5 1696 35936 68 8 2 chr3 145736138 145742419 -13857364 - L1Md_F2 LINE L1 0 6582 262 5 1696 760 230 137 22 chr3 145742425 145742652 -13857131 - B4A SINE B4 -37 255 3 5 1696 554 107 119 7 chr3 145742774 145742925 -13856858 + CT-rich Low_complexity Low_complexity 4 171 0 5 1696 1049 45 0 73 chr3 145742925 145743117 -13856666 + (TTCCC)n Simple_repeat Simple_repeat 3 180 0 5 1696 456 19 0 0 chr3 145743117 145743170 -13856613 + (TTTC)n Simple_repeat Simple_repeat 4 56 0 5 1696 582 244 57 120 chr3 145743621 145743830 -13855953 - B3A SINE B2 0 198 3 5 1696 4186 57 16 6 chr3 145745370 145745884 -13853899 + MURVY-LTR LTR ERV1 1 519 0 5 1696 21 0 0 0 chr3 145746229 145746250 -13853533 + AT_rich Low_complexity Low_complexity 1 21 0 5 1696 243 61 0 0 chr3 145746468 145746501 -13853282 + (TTTTG)n Simple_repeat Simple_repeat 1 33 0 5 1696 349 62 0 0 chr3 145746502 145746550 -13853233 - B1_Mm SINE Alu 0 147 100 5 1696 2116 105 3 67 chr3 145746550 145746908 -13852875 + IAPLTR1a_Mm LTR ERVK 1 335 -2 5 1696 24118 8 7 47 chr3 145746930 145749779 -13850004 + IAPEz-int LTR ERVK 17 2751 -3730 5 26 29646 12 1 0 chr3 145749771 145753004 -13846779 + IAPEz-int LTR ERVK 3244 6481 0 5 1697 2105 103 11 68 chr3 145753004 145753359 -13846424 + IAPLTR1a_Mm LTR ERVK 1 335 -2 5 1697 803 48 0 0 chr3 145753361 145753466 -13846317 - B1_Mm SINE Alu -42 105 1 5 1697 253 252 8 0 chr3 145753466 145753480 -13846303 - ORR1B1-int LTR MaLR -757 752 633 5 1697 852 85 0 0 chr3 145753606 145753724 -13846059 + (CCTG)n Simple_repeat Simple_repeat 2 119 0 5 1697 604 357 10 47 chr3 145753767 145754067 -13845716 - B4A SINE B4 -2 290 2 5 1697 247 314 97 24 chr3 145754121 145754245 -13845538 + MER20 DNA MER1_type 87 219 0 5 1697 407 350 113 22 chr3 145754431 145754653 -13845130 + MIR SINE MIR 7 248 -14 5 1697 667 243 21 7 chr3 145755464 145755605 -13844178 + B1F SINE Alu 6 148 -1 5 1697 503 300 96 43 chr3 145756791 145757000 -13842783 - MLT1C LTR MaLR -245 222 3 5 1697 444 147 0 0 chr3 145757512 145757587 -13842196 + (GGA)n Simple_repeat Simple_repeat 1 75 0 5 1697 1214 54 0 13 chr3 145757598 145757747 -13842036 + B1_Mus1 SINE Alu 2 148 0 5 1697 275 73 22 99 chr3 145757752 145757843 -13841940 + A-rich Low_complexity Low_complexity 2 85 0 5 1697 246 192 0 0 chr3 145758045 145758097 -13841686 + (TATG)n Simple_repeat Simple_repeat 1 52 0 5 1697 838 219 120 0 chr3 145758554 145758746 -13841037 - B3 SINE B2 0 216 2 5 1697 2001 197 50 91 chr3 145758824 145759365 -13840418 + RLTR11A LTR ERVK 10 528 0 5 1697 536 252 263 9 chr3 145759365 145759579 -13840204 + B4A SINE B4 20 287 -5 5 1697 693 24 0 0 chr3 145759638 145759721 -13840062 + (CA)n Simple_repeat Simple_repeat 2 84 0 5 1697 222 263 94 66 chr3 145759825 145759931 -13839852 - PB1D10 SINE Alu -8 109 1 5 1697 1252 54 0 0 chr3 145760386 145760534 -13839249 + B1_Mus1 SINE Alu 1 148 0 5 1697 3408 225 63 75 chr3 145760557 145761542 -13838241 + RMER1B Other Other 91 1063 -3 5 1697 688 242 0 75 chr3 145761671 145761832 -13837951 + MTEb LTR MaLR 3 151 -228 5 1697 239 116 71 14 chr3 145761832 145761902 -13837881 + CT-rich Low_complexity Low_complexity 3 76 0 5 1697 516 215 33 8 chr3 145762925 145763047 -13836736 + B4 SINE B4 3 127 -165 5 1697 489 290 38 25 chr3 145763041 145763200 -13836583 + MTEb LTR MaLR 219 379 0 5 1697 339 258 11 33 chr3 145763200 145763291 -13836492 - B1F SINE Alu -14 135 47 5 1697 259 254 0 0 chr3 145763757 145763812 -13835971 - MER82 DNA MER2_type -389 264 210 5 1697 260 313 0 29 chr3 145763937 145764075 -13835708 + (TG)n Simple_repeat Simple_repeat 1 134 0 5 1697 329 296 0 29 chr3 145764086 145764260 -13835523 + (TG)n Simple_repeat Simple_repeat 1 169 0 5 1697 390 239 0 113 chr3 145764316 145764519 -13835264 + (TG)n Simple_repeat Simple_repeat 1 180 0 5 1697 283 313 0 29 chr3 145764530 145764701 -13835082 + (TG)n Simple_repeat Simple_repeat 2 167 0 5 1697 386 255 9 18 chr3 145764751 145764985 -13834798 + (TATG)n Simple_repeat Simple_repeat 1 231 0 5 1697 252 269 51 13 chr3 145765004 145765083 -13834700 - RSINE1 SINE B4 0 165 84 5 1697 1087 185 19 23 chr3 145765115 145765331 -13834452 - B3 SINE B2 -1 215 1 5 1697 313 280 13 13 chr3 145765345 145765421 -13834362 - RSINE1 SINE B4 -86 79 4 5 1697 223 307 94 47 chr3 145765536 145765642 -13834141 + B1F SINE Alu 2 112 -37 5 1697 210 171 0 0 chr3 145766034 145766075 -13833708 + (CAA)n Simple_repeat Simple_repeat 3 43 0 5 1697 1201 68 0 0 chr3 145766305 145766453 -13833330 - B1_Mus1 SINE Alu 0 148 1 5 1697 420 276 10 0 chr3 145766917 145767015 -13832768 + PB1D7 SINE Alu 1 99 -21 5 1697 278 306 48 68 chr3 145767039 145767186 -13832597 + MIRb SINE MIR 54 197 -71 5 1697 274 272 86 161 chr3 145767428 145767590 -13832193 - RSINE1 SINE B4 0 165 16 5 1697 27 0 0 0 chr3 145767610 145767637 -13832146 + AT_rich Low_complexity Low_complexity 1 27 0 5 1697 2735 148 87 32 chr3 145767654 145768151 -13831632 + RMER16 LTR ERVK 1 524 -9 5 1697 231 273 12 49 chr3 145768226 145768307 -13831476 - PB1D10 SINE Alu 0 117 40 5 1697 636 121 0 48 chr3 145768464 145768568 -13831215 - MTC LTR MaLR 0 421 323 5 1697 800 114 92 0 chr3 145768564 145768695 -13831088 - MTC LTR MaLR -277 144 2 5 1697 289 256 87 65 chr3 145768841 145768886 -13830897 - B4 SINE B4 -197 95 56 5 1697 2040 107 23 73 chr3 145768886 145769045 -13830738 + ORR1A2 LTR MaLR 1 149 -178 5 1697 1126 52 0 0 chr3 145769045 145769180 -13830603 + B1_Mus1 SINE Alu 2 136 -12 5 1697 738 34 0 0 chr3 145769180 145769269 -13830514 + (GAAA)n Simple_repeat Simple_repeat 1 89 0 5 1697 2040 107 23 73 chr3 145769269 145769451 -13830332 + ORR1A2 LTR MaLR 150 325 -2 5 1697 289 256 87 65 chr3 145769451 145769497 -13830286 - B4 SINE B4 -237 55 2 5 1697 23 54 0 0 chr3 145769509 145769546 -13830237 + AT_rich Low_complexity Low_complexity 1 37 0 5 1697 471 87 0 0 chr3 145769546 145769615 -13830168 + (TG)n Simple_repeat Simple_repeat 2 70 0 5 1697 647 254 0 0 chr3 145769615 145769737 -13830046 - RSINE1 SINE B4 -41 124 3 5 1697 180 97 0 0 chr3 145771466 145771497 -13828286 + (TTTTG)n Simple_repeat Simple_repeat 5 35 0 5 1697 306 98 0 0 chr3 145771909 145771960 -13827823 + (TG)n Simple_repeat Simple_repeat 2 52 0 5 1697 223 361 14 0 chr3 145771960 145772032 -13827751 - RSINE1 SINE B4 -10 155 83 5 1697 453 227 29 49 chr3 145772055 145772157 -13827626 - B4 SINE B4 -168 124 25 5 1697 196 179 53 18 chr3 145773208 145773322 -13826461 + (TA)n Simple_repeat Simple_repeat 1 118 0 5 1697 216 97 0 0 chr3 145773545 145773576 -13826207 + (GAAA)n Simple_repeat Simple_repeat 2 32 0 5 1697 212 242 105 42 chr3 145774048 145774143 -13825640 - MIRb SINE MIR -108 160 60 5 1697 545 286 118 21 chr3 145774208 145774357 -13825426 - B4 SINE B4 -8 284 123 5 1697 387 0 0 0 chr3 145774357 145774400 -13825383 + (TC)n Simple_repeat Simple_repeat 1 43 0 5 1697 450 0 0 0 chr3 145774400 145774449 -13825334 + (CA)n Simple_repeat Simple_repeat 1 50 0 5 1697 545 286 118 21 chr3 145774449 145774484 -13825299 - B4 SINE B4 -170 122 82 5 1697 1199 242 80 58 chr3 145775387 145775751 -13824032 - MTE2b LTR MaLR -7 372 1 5 1697 268 261 78 16 chr3 145776054 145776173 -13823610 + MER5C DNA MER1_type 14 136 -177 5 1697 930 225 143 7 chr3 145776610 145776897 -13822886 + Lx8 LINE L1 7146 7471 -2 5 1697 1198 234 48 97 chr3 145777401 145777774 -13822009 - ORR1D2 LTR MaLR -2 368 14 5 1697 1177 35 14 14 chr3 145777997 145778144 -13821639 - B1_Mus2 SINE Alu 0 147 1 5 1697 287 322 156 16 chr3 145778144 145778330 -13821453 - L1M5 LINE L1 -1433 4713 4502 5 1697 763 176 99 26 chr3 145779066 145779218 -13820565 - U1 snRNA snRNA -2 163 1 5 1697 839 269 9 5 chr3 145779404 145779617 -13820166 - B3 SINE B2 0 216 3 5 1697 416 208 102 19 chr3 145779763 145779871 -13819912 - B4 SINE B4 -79 213 97 5 1697 2223 191 17 15 chr3 145781918 145782327 -13817456 - MTD LTR MaLR -9 410 1 5 1697 262 307 98 45 chr3 145783290 145783423 -13816360 - MIRb SINE MIR -36 232 93 5 1697 270 0 0 0 chr3 145783690 145783720 -13816063 + (T)n Simple_repeat Simple_repeat 1 30 0 5 1697 544 201 111 7 chr3 145785182 145785317 -13814466 - B1_Mur1 SINE Alu 0 149 1 5 1697 678 220 15 22 chr3 145785765 145785900 -13813883 + RSINE1 SINE B4 2 135 -30 5 1697 558 269 15 0 chr3 145786873 145787003 -13812780 - B1F SINE Alu -1 148 17 5 1697 1134 120 0 0 chr3 145787025 145787200 -13812583 + (TC)n Simple_repeat Simple_repeat 1 175 0 5 1697 359 41 20 0 chr3 145787200 145787248 -13812535 + (CA)n Simple_repeat Simple_repeat 1 50 0 5 1697 279 0 0 0 chr3 145787283 145787314 -13812469 + (TG)n Simple_repeat Simple_repeat 1 31 0 5 1697 356 230 45 22 chr3 145787501 145787590 -13812193 - B4 SINE B4 -201 91 1 5 1697 246 329 37 0 chr3 145787903 145787985 -13811798 - ID2 SINE ID -60 92 9 5 1697 694 267 13 7 chr3 145788141 145788292 -13811491 + B3A SINE B2 2 153 -45 5 1697 258 32 0 0 chr3 145788295 145788326 -13811457 + (CA)n Simple_repeat Simple_repeat 1 31 0 5 1697 282 132 0 0 chr3 145789033 145789086 -13810697 + (TG)n Simple_repeat Simple_repeat 1 53 0 5 1697 380 77 0 0 chr3 145789111 145789163 -13810620 - HAL1-3A_ME LINE L1 -832 2026 1975 5 1697 315 0 0 0 chr3 145789206 145789241 -13810542 + (TG)n Simple_repeat Simple_repeat 2 36 0 5 1697 432 0 0 0 chr3 145789241 145789289 -13810494 + (GA)n Simple_repeat Simple_repeat 1 48 0 5 1697 2064 125 43 31 chr3 145789318 145789640 -13810143 - ORR1A3 LTR MaLR 0 326 1 5 1697 635 248 79 156 chr3 145789681 145789996 -13809787 - B4 SINE B4 0 292 2 5 1697 406 260 20 0 chr3 145790098 145790198 -13809585 - ID_B1 SINE B4 0 224 123 5 1697 282 232 188 10 chr3 145790376 145790472 -13809311 - MLT1A1 LTR MaLR -12 396 284 5 1697 360 0 0 0 chr3 145790666 145790706 -13809077 + (CA)n Simple_repeat Simple_repeat 1 40 0 5 1697 1201 49 0 0 chr3 145791396 145791538 -13808245 + B1_Mus1 SINE Alu 2 143 -5 6 1697 1047 241 264 28 chr3 145792918 145793354 -13806429 - Lx8 LINE L1 -9 7464 6926 6 1697 278 340 0 20 chr3 145795362 145795461 -13804322 + CT-rich Low_complexity Low_complexity 1 97 0 6 1697 458 238 20 0 chr3 145795468 145795569 -13804214 - PB1D10 SINE Alu -13 104 2 6 1697 361 340 80 6 chr3 145795801 145795964 -13803819 + MIR SINE MIR 52 226 -36 6 1697 330 276 90 19 chr3 145796019 145796174 -13803609 + L2a LINE L2 3246 3411 -15 6 1697 521 273 14 14 chr3 145796243 145796388 -13803395 - B1F SINE Alu 0 149 5 6 1697 774 32 0 0 chr3 145797100 145797193 -13802590 + (TC)n Simple_repeat Simple_repeat 2 94 0 6 1697 222 37 0 0 chr3 145797193 145797219 -13802564 + (TG)n Simple_repeat Simple_repeat 2 28 0 6 1697 468 184 237 0 chr3 145797220 145797334 -13802449 - B1_Mur4 SINE Alu -9 141 1 6 1697 456 104 0 0 chr3 145797536 145797603 -13802180 + (GGA)n Simple_repeat Simple_repeat 2 68 0 6 1697 559 241 17 15 chr3 145798316 145798463 -13801320 - ID_B1 SINE B4 -1 223 82 6 1697 254 271 364 8 chr3 145798535 145798925 -13800858 + L2a LINE L2 1431 1959 -1460 6 1697 544 317 138 30 chr3 145799720 145800064 -13799719 + L2a LINE L2 2953 3325 -101 6 1697 342 0 0 0 chr3 145800064 145800102 -13799681 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 6 1697 544 317 138 30 chr3 145800102 145800183 -13799600 + L2a LINE L2 3326 3424 -2 6 1697 2263 164 23 3 chr3 145800538 145800923 -13798860 - ORR1B1 LTR MaLR -1 393 1 6 1697 600 227 25 16 chr3 145801033 145801154 -13798629 - ID_B1 SINE B4 -30 194 73 6 1697 809 219 180 8 chr3 145801184 145801423 -13798360 - Lx8 LINE L1 -2 7471 7192 6 1697 985 126 11 0 chr3 145801863 145802038 -13797745 + (GGGAA)n Simple_repeat Simple_repeat 1 177 0 6 1697 268 276 0 10 chr3 145802742 145802828 -13796955 - ID2 SINE ID -59 93 11 6 1697 621 231 14 50 chr3 145804693 145804834 -13794949 + B4A SINE B4 157 292 0 6 1697 270 290 154 11 chr3 145805016 145805295 -13794488 + L1MC2 LINE L1 3006 3324 -2822 6 1697 847 351 154 74 chr3 145805665 145807091 -13792692 + MLT-int LTR MaLR 24 1562 -173 6 1697 292 299 71 10 chr3 145807113 145807211 -13792572 + MLT-int LTR MaLR 1627 1730 -5 6 1697 293 227 11 74 chr3 145807424 145807519 -13792264 + MLT1A1 LTR MaLR 320 408 0 6 1697 593 138 29 14 chr3 145807567 145807707 -13792076 + CT-rich Low_complexity Low_complexity 3 144 0 6 1697 703 182 29 0 chr3 145807708 145807845 -13791938 - B1_Mur3 SINE Alu 0 149 9 6 1697 1721 272 89 27 chr3 145807914 145808715 -13791068 + L1MC2 LINE L1 5150 6000 -344 6 1697 418 284 0 62 chr3 145808752 145808912 -13790871 - MLT1A LTR MaLR -4 404 257 6 1697 372 294 11 0 chr3 145808950 145809042 -13790741 + L1MC2 LINE L1 6239 6331 -13 6 1697 414 262 0 113 chr3 145810427 145810586 -13789197 + B3A SINE B2 58 198 0 6 1697 377 287 54 0 chr3 145810651 145810780 -13789003 - B1F SINE Alu -9 140 5 6 1697 25 51 0 0 chr3 145810860 145810899 -13788884 + AT_rich Low_complexity Low_complexity 1 39 0 6 1697 246 231 0 0 chr3 145811005 145811057 -13788726 - Lx9 LINE L1 -203 7441 7390 6 1697 423 0 0 0 chr3 145811446 145811493 -13788290 + (TC)n Simple_repeat Simple_repeat 1 47 0 6 1697 378 0 0 0 chr3 145811493 145811535 -13788248 + (TG)n Simple_repeat Simple_repeat 2 43 0 6 1697 258 271 71 0 chr3 145811563 145811633 -13788150 - RSINE1 SINE B4 -36 129 55 6 1697 352 293 88 22 chr3 145811853 145811989 -13787794 + B1F2 SINE Alu 5 149 0 6 1697 535 204 37 0 chr3 145811882 145811990 -13787793 + ID_B1 SINE B4 113 224 0 6 1697 402 202 51 41 chr3 145812543 145812641 -13787142 + B1F1 SINE Alu 3 101 -48 6 1697 222 289 0 0 chr3 145812680 145812756 -13787027 + G-rich Low_complexity Low_complexity 1 76 0 6 1697 339 25 0 0 chr3 145813482 145813522 -13786261 + (TG)n Simple_repeat Simple_repeat 2 41 0 6 1697 1059 16 0 8 chr3 145814083 145814212 -13785571 - B1_Mus1 SINE Alu 0 148 21 6 1697 495 256 74 58 chr3 145814256 145814454 -13785329 + B4 SINE B4 86 285 -7 6 1697 25 0 0 0 chr3 145815770 145815795 -13783988 + AT_rich Low_complexity Low_complexity 1 25 0 6 1697 344 59 0 19 chr3 145815795 145815847 -13783936 + (TG)n Simple_repeat Simple_repeat 2 52 0 6 1697 392 307 7 28 chr3 145815849 145815990 -13783793 - B3A SINE B2 -47 151 14 6 1697 1239 34 0 20 chr3 145816290 145816439 -13783344 + B1_Mus1 SINE Alu 2 147 -1 6 1697 223 167 0 0 chr3 145817878 145817920 -13781863 + (TG)n Simple_repeat Simple_repeat 1 42 0 6 1697 472 315 24 105 chr3 145817920 145818168 -13781615 - B4A SINE B4 0 292 65 6 1697 419 158 17 41 chr3 145818168 145818340 -13781443 + (TA)n Simple_repeat Simple_repeat 2 169 0 6 1697 181 333 0 26 chr3 145818750 145818827 -13780956 - L2b LINE L2 -1 3374 3300 6 1697 475 225 58 8 chr3 145818951 145819072 -13780711 + B1F SINE Alu 23 149 0 6 1697 372 267 0 57 chr3 145819853 145819976 -13779807 + G-rich Low_complexity Low_complexity 1 116 0 6 1697 212 297 87 33 chr3 145820027 145820177 -13779606 - L2b LINE L2 -1151 2268 2111 6 1697 1164 241 78 3 chr3 145820304 145820587 -13779196 - MTE2b LTR MaLR -46 333 30 6 1697 312 27 0 0 chr3 145821300 145821337 -13778446 + (TC)n Simple_repeat Simple_repeat 2 38 0 6 1697 528 16 0 0 chr3 145821373 145821434 -13778349 + (GA)n Simple_repeat Simple_repeat 1 61 0 6 1697 492 286 42 21 chr3 145821448 145821591 -13778192 - B4 SINE B4 -146 146 1 6 1697 1148 55 0 52 chr3 145821739 145821893 -13777890 - B1_Mus2 SINE Alu -1 146 1 6 1697 207 146 0 0 chr3 145822069 145822110 -13777673 + (TC)n Simple_repeat Simple_repeat 2 42 0 6 1697 276 30 0 0 chr3 145822113 145822146 -13777637 + (TG)n Simple_repeat Simple_repeat 1 33 0 6 1697 1975 163 29 9 chr3 145822248 145822595 -13777188 - ORR1B1 LTR MaLR 0 394 41 6 1697 440 308 81 22 chr3 145823054 145823066 -13776717 - ID_B1 SINE B4 -3 221 153 6 1697 539 272 9 0 chr3 145823066 145823180 -13776603 - B1F SINE Alu -28 121 7 6 1697 922 222 18 36 chr3 145823319 145823539 -13776244 - B3 SINE B2 0 216 1 6 1697 2867 57 42 140 chr3 145823842 145824314 -13775469 - RLTR10C LTR ERVK -10 426 1 6 1697 242 313 0 24 chr3 145824651 145824736 -13775047 + CT-rich Low_complexity Low_complexity 3 85 0 6 1697 1155 188 9 40 chr3 145827481 145827703 -13772080 + B3 SINE B2 2 216 0 6 1697 303 292 149 28 chr3 145827721 145827862 -13771921 + HAL1-3A_ME LINE L1 2284 2441 -417 6 1697 829 229 31 21 chr3 145828254 145828446 -13771337 - B3A SINE B2 -3 195 2 6 1697 372 345 49 30 chr3 145828541 145828744 -13771039 - MIR SINE MIR -21 241 35 6 1697 270 0 0 0 chr3 145829079 145829109 -13770674 + (TG)n Simple_repeat Simple_repeat 2 31 0 6 1697 378 0 0 0 chr3 145829900 145829942 -13769841 + (CA)n Simple_repeat Simple_repeat 2 43 0 6 1697 274 365 19 39 chr3 145830700 145830854 -13768929 + B4A SINE B4 16 166 -126 6 1697 2156 205 20 11 chr3 145830980 145831434 -13768349 - RLTR16 LTR ERVK -15 490 33 6 1697 528 100 0 0 chr3 145831513 145831593 -13768190 + (CA)n Simple_repeat Simple_repeat 1 80 0 6 1697 462 79 0 0 chr3 145832004 145832067 -13767716 + (TG)n Simple_repeat Simple_repeat 2 64 0 6 1697 423 308 19 0 chr3 145832332 145832439 -13767344 - PB1D7 SINE Alu -10 110 2 6 1697 273 244 78 96 chr3 145832550 145832683 -13767100 - LTR48B LTR ERV1 -647 140 1 6 1697 521 287 181 44 chr3 145833644 145833898 -13765885 - MER110A LTR ERV1 -34 457 171 6 1697 847 195 0 7 chr3 145833898 145834048 -13765735 - B1_Mur1 SINE Alu 0 149 1 6 1697 253 0 0 51 chr3 145834050 145834089 -13765694 + (TTA)n Simple_repeat Simple_repeat 2 38 0 6 1697 521 304 86 58 chr3 145834089 145834229 -13765554 - MER110A LTR ERV1 -298 170 25 6 1697 426 269 196 34 chr3 145835991 145836195 -13763588 - RMER15 LTR ERVL -1 574 338 6 1697 205 385 39 0 chr3 145837444 145837548 -13762235 + MIR SINE MIR 35 142 -120 6 1697 430 184 32 65 chr3 145837959 145838052 -13761731 - B1F2 SINE Alu -26 123 34 6 1697 363 319 43 16 chr3 145838140 145838370 -13761413 - L1MC4 LINE L1 -588 7454 7203 6 1697 275 261 0 30 chr3 145838911 145838978 -13760805 + B4A SINE B4 21 85 -207 6 1697 614 300 100 28 chr3 145839035 145839285 -13760498 + MTD LTR MaLR 5 272 -147 6 1697 291 338 57 14 chr3 145839763 145839904 -13759879 + MIR SINE MIR 31 177 -85 6 1697 266 320 27 99 chr3 145840227 145840338 -13759445 + PB1D10 SINE Alu 9 111 -6 6 1697 289 289 26 0 chr3 145841575 145841651 -13758132 + B1F SINE Alu 13 90 -59 6 1697 912 195 90 16 chr3 145841651 145841839 -13757944 - ORR1D2 LTR MaLR 0 370 169 6 1697 312 312 11 74 chr3 145841864 145842054 -13757729 + Lx8 LINE L1 7018 7195 -278 6 1697 249 108 0 0 chr3 145842587 145842624 -13757159 + (CTCA)n Simple_repeat Simple_repeat 2 38 0 6 1697 1135 132 2 52 chr3 145843292 145843516 -13756267 - ORR1A2 LTR MaLR -113 233 20 6 1697 382 169 1 64 chr3 145843521 145843615 -13756168 - ORR1B2 LTR MaLR -239 107 25 6 1697 987 160 144 0 chr3 145844053 145844240 -13755543 - B3 SINE B2 -2 214 1 6 1697 200 191 207 35 chr3 145845777 145845864 -13753919 + L2c LINE L2 3216 3317 -70 6 1697 240 167 0 0 chr3 145846024 145846060 -13753723 + C-rich Low_complexity Low_complexity 1 36 0 6 1697 428 217 7 21 chr3 145846060 145846201 -13753582 + CT-rich Low_complexity Low_complexity 1 139 0 6 1697 668 242 0 15 chr3 145846202 145846336 -13753447 - B1F SINE Alu -2 147 16 6 1697 236 176 0 73 chr3 145847101 145847156 -13752627 + MamGypLTR2b LTR Gypsy 246 296 -626 6 1697 243 224 21 96 chr3 145847262 145847356 -13752427 + MT2B2 LTR ERVL 160 246 -338 6 1697 400 255 41 0 chr3 145847313 145847411 -13752372 + B1F SINE Alu 46 147 -2 6 1697 376 298 111 102 chr3 145848345 145848670 -13751113 - ORR1E LTR MaLR -6 353 26 7 1697 181 323 15 15 chr3 145849273 145849339 -13750444 - MIR SINE MIR -111 151 86 7 1697 231 325 26 69 chr3 145849611 145849755 -13750028 + L2c LINE L2 3252 3364 -11 7 1697 891 296 69 72 chr3 145849784 145850159 -13749624 + MTEb LTR MaLR 1 374 -5 7 1697 1401 234 14 126 chr3 145852006 145852427 -13747356 - MTE2b LTR MaLR -5 374 1 7 1697 2378 137 29 91 chr3 145853600 145854049 -13745734 - MTC LTR MaLR 0 421 1 7 1697 1546 168 79 25 chr3 145855716 145856071 -13743712 - ORR1D1 LTR MaLR 0 374 1 7 1697 465 278 6 122 chr3 145856605 145856777 -13743006 - MTEa LTR MaLR 0 379 228 7 1697 391 198 276 22 chr3 145856877 145857011 -13742772 - MTEa LTR MaLR -135 244 77 7 1697 267 247 62 73 chr3 145857386 145857482 -13742301 + BC1_Mm scRNA scRNA 5 99 -53 7 1697 593 235 65 145 chr3 145857398 145857612 -13742171 + ID_B1 SINE B4 24 220 -4 7 1697 251 290 123 99 chr3 145858916 145859079 -13740704 + B3A SINE B2 35 201 -15 7 1697 443 221 154 72 chr3 145860138 145860333 -13739450 - MTEa LTR MaLR -161 218 8 7 1697 312 352 16 8 chr3 145861016 145861142 -13738641 + MER45A DNA Tip100 52 178 0 7 1697 540 295 46 6 chr3 145861195 145861369 -13738414 - B3A SINE B2 -16 182 2 7 1697 637 222 65 29 chr3 145861473 145861612 -13738171 - B1F SINE Alu 0 149 6 7 1697 226 345 0 66 chr3 145861519 145861640 -13738143 - MT2B LTR ERVL -341 260 148 7 1697 1730 168 32 92 chr3 145863062 145863496 -13736287 - RMER17C LTR ERVK -2 408 1 7 1697 594 146 8 24 chr3 145863499 145863625 -13736158 + CT-rich Low_complexity Low_complexity 2 125 0 7 1697 243 0 0 0 chr3 145863625 145863652 -13736131 + (TC)n Simple_repeat Simple_repeat 2 28 0 7 1697 498 75 0 0 chr3 145863652 145863719 -13736064 + (CA)n Simple_repeat Simple_repeat 1 67 0 7 1697 7108 77 88 0 chr3 145864011 145865028 -13734755 - L1_Mus3 LINE L1 -1 6637 5531 7 1697 441 214 96 10 chr3 145865175 145865279 -13734504 + Lx7 LINE L1 7144 7256 -440 7 1697 780 238 147 18 chr3 145865698 145865916 -13733867 + B4A SINE B4 31 276 -16 7 1697 438 53 0 0 chr3 145866011 145866068 -13733715 + (CA)n Simple_repeat Simple_repeat 1 57 0 7 1697 673 230 14 0 chr3 145866675 145866814 -13732969 - B1F SINE Alu -6 143 3 7 1697 498 287 72 31 chr3 145866897 145867091 -13732692 + B4A SINE B4 87 288 -4 7 1697 209 333 137 38 chr3 145867352 145867483 -13732300 + MIRm SINE MIR 40 183 -93 7 1697 180 283 69 20 chr3 145867455 145867556 -13732227 - MIR SINE MIR -126 136 31 7 1697 313 255 152 108 chr3 145867864 145868159 -13731624 + Lx8 LINE L1 7149 7456 -17 7 1697 257 287 121 55 chr3 145868791 145868843 -13730940 - L1MC4 LINE L1 -400 7642 7590 7 1697 464 0 0 18 chr3 145868843 145868900 -13730883 + (TTA)n Simple_repeat Simple_repeat 2 57 0 7 1697 257 287 121 55 chr3 145868900 145869046 -13730737 - L1MC4 LINE L1 -453 7589 7431 7 1697 315 254 90 51 chr3 145869457 145869635 -13730148 - Lx8 LINE L1 -2 7471 7287 7 1697 1027 247 58 8 chr3 145869635 145869892 -13729891 + Lx8 LINE L1 7011 7280 -193 7 1697 694 175 6 22 chr3 145869925 145870049 -13729734 + polypyrimidine Low_complexity Low_complexity 57 178 0 7 1697 1048 119 6 11 chr3 145870049 145870227 -13729556 + (TTCTCC)n Simple_repeat Simple_repeat 1 177 0 7 1697 694 175 6 22 chr3 145870227 145870283 -13729500 + polypyrimidine Low_complexity Low_complexity 1 56 0 7 1697 450 217 17 22 chr3 145870284 145870463 -13729320 + CT-rich Low_complexity Low_complexity 2 179 0 7 1697 307 309 12 0 chr3 145870475 145870559 -13729224 + Lx8 LINE L1 6849 6933 -540 7 1697 188 387 18 28 chr3 145870861 145870970 -13728813 - MIRc SINE MIR -14 254 147 7 1697 23 0 0 0 chr3 145871574 145871597 -13728186 + AT_rich Low_complexity Low_complexity 1 23 0 7 1697 240 224 0 0 chr3 145871668 145871735 -13728048 + (TG)n Simple_repeat Simple_repeat 2 68 0 7 1697 405 0 0 0 chr3 145871747 145871792 -13727991 + (TCTA)n Simple_repeat Simple_repeat 2 46 0 7 1697 6948 112 37 18 chr3 145871792 145873296 -13726487 - Lx LINE L1 -15 6639 5106 7 1697 1973 67 12 0 chr3 145873296 145873551 -13726232 - L1Md_F2 LINE L1 0 6582 6325 7 1697 6521 145 13 13 chr3 145873551 145873811 -13725972 - Lx LINE L1 -778 5105 4852 7 1697 3206 61 5 10 chr3 145873811 145874209 -13725574 - MTA_Mm LTR MaLR 0 396 1 7 1697 6521 145 13 13 chr3 145874209 145874257 -13725526 - Lx LINE L1 -1032 4851 4804 7 1697 273 295 53 0 chr3 145874656 145874751 -13725032 - L1MEd LINE L1 -4705 1520 1421 7 1697 303 374 58 54 chr3 145874829 145875106 -13724677 - L1MEd LINE L1 -4865 1254 977 7 1697 1258 21 14 0 chr3 145877153 145877298 -13722485 + B1_Mm SINE Alu 1 147 0 7 1697 342 0 0 0 chr3 145878857 145878895 -13720888 + (CA)n Simple_repeat Simple_repeat 2 39 0 7 1697 198 0 0 0 chr3 145879304 145879326 -13720457 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 7 1697 1096 65 7 0 chr3 145879329 145879468 -13720315 - B1_Mus1 SINE Alu -7 141 2 7 1697 1054 78 35 0 chr3 145879867 145880008 -13719775 - B1_Mus2 SINE Alu 0 147 2 7 1697 660 294 21 21 chr3 145880264 145880500 -13719283 + Lx7 LINE L1 5679 5914 -1782 7 1697 539 177 139 87 chr3 145880872 145881045 -13718738 + B3A SINE B2 1 182 -16 7 1697 226 252 101 19 chr3 145881047 145881205 -13718578 - RLTR21 LTR ERVK -318 1254 1084 7 1697 21 0 0 0 chr3 145881341 145881362 -13718421 + AT_rich Low_complexity Low_complexity 1 21 0 7 1697 523 276 103 31 chr3 145881519 145881713 -13718070 - B3 SINE B2 0 216 9 7 1697 450 298 68 32 chr3 145881893 145882174 -13717609 - Lx8 LINE L1 -28 7445 7155 7 1697 279 114 0 0 chr3 145882844 145882888 -13716895 + (TG)n Simple_repeat Simple_repeat 1 44 0 7 1697 643 282 170 4 chr3 145882889 145883124 -13716659 - B4A SINE B4 -7 285 12 7 1698 21 57 0 0 chr3 145883864 145883899 -13715884 + GC_rich Low_complexity Low_complexity 1 35 0 7 1698 315 0 0 0 chr3 145885633 145885668 -13714115 + (TCTG)n Simple_repeat Simple_repeat 2 36 0 7 1698 279 285 101 11 chr3 145885961 145886077 -13713706 + MIRb SINE MIR 43 177 -91 7 1698 358 312 154 15 chr3 145886332 145886527 -13713256 - ORR1E LTR MaLR -44 315 94 7 1698 1275 176 9 9 chr3 145886702 145886926 -13712857 + URR1A DNA MER1_type 3 226 0 7 1698 258 380 11 0 chr3 145888130 145888222 -13711561 - MamRep1879 DNA hAT? -65 151 59 7 1698 552 328 93 44 chr3 145888272 145888703 -13711080 - L1MC4 LINE L1 -605 7437 6986 7 1698 681 101 0 0 chr3 145888756 145888855 -13710928 + (TCCC)n Simple_repeat Simple_repeat 4 102 0 7 1698 228 244 11 58 chr3 145889099 145889186 -13710597 - L1MA9 LINE L1 -154 6158 6076 7 1698 244 352 23 0 chr3 145890561 145890649 -13709134 - Tigger5 DNA MER2_type -25 2381 2292 7 1698 496 333 115 44 chr3 145890646 145890872 -13708911 - Tigger5 DNA MER2_type -2164 242 1 7 1698 375 299 14 29 chr3 145891344 145891482 -13708301 - MIR SINE MIR -61 201 66 7 1698 1181 299 115 32 chr3 145891522 145892215 -13707568 - L1M3 LINE L1 -1232 4908 4158 7 1698 242 73 0 24 chr3 145892549 145892591 -13707192 + (CAAA)n Simple_repeat Simple_repeat 2 42 0 7 1698 847 366 67 25 chr3 145892812 145893338 -13706445 - MLT1J-int LTR MaLR -642 745 198 7 1698 326 292 0 0 chr3 145893464 145893567 -13706216 + ID4 SINE ID 7 109 -43 7 1698 248 302 71 30 chr3 145893596 145893695 -13706088 - Charlie10 DNA MER1_type -2663 159 57 7 1698 328 216 14 0 chr3 145893958 145894032 -13705751 + B4 SINE B4 11 85 -207 7 1698 270 73 0 0 chr3 145894100 145894141 -13705642 + (CA)n Simple_repeat Simple_repeat 1 41 0 7 1698 982 204 31 25 chr3 145894533 145894729 -13705054 - B3 SINE B2 -17 199 3 7 1698 241 333 60 26 chr3 145895249 145895366 -13704417 - L2c LINE L2 -15 3372 3252 7 1698 839 0 0 0 chr3 145895397 145895499 -13704284 + L1Md_A LINE L1 6481 6582 0 7 1698 501 333 124 18 chr3 145895587 145895804 -13703979 + B4 SINE B4 49 288 -4 7 1698 420 114 18 37 chr3 145897107 145897216 -13702567 + (CAGA)n Simple_repeat Simple_repeat 2 108 0 7 1698 686 243 160 22 chr3 145897239 145897470 -13702313 - B4 SINE B4 -23 269 7 7 1698 369 267 32 97 chr3 145897945 145898161 -13701622 - L1MC3 LINE L1 -10 7775 7574 7 1698 354 61 0 0 chr3 145898195 145898244 -13701539 + (CCTG)n Simple_repeat Simple_repeat 3 51 0 7 1698 770 171 17 11 chr3 145898245 145898422 -13701361 + CT-rich Low_complexity Low_complexity 2 179 0 7 1698 186 43 0 0 chr3 145898422 145898445 -13701338 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 7 1698 332 332 125 28 chr3 145898477 145898877 -13700906 - L1MC3 LINE L1 -441 7344 6906 7 1698 328 326 144 32 chr3 145899184 145899532 -13700251 - L2a LINE L2 -8 3418 3032 7 1698 189 94 0 0 chr3 145899926 145899958 -13699825 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 7 1698 294 29 0 0 chr3 145900317 145900352 -13699431 + (TG)n Simple_repeat Simple_repeat 2 36 0 7 1698 197 405 11 0 chr3 145900809 145900898 -13698885 + MIRb SINE MIR 177 266 -2 7 1698 476 186 149 9 chr3 145901632 145901746 -13698037 + B1_Mus1 SINE Alu 3 132 -16 7 1698 288 130 0 0 chr3 145901749 145901795 -13697988 + (TGGA)n Simple_repeat Simple_repeat 4 49 0 7 1698 204 25 100 0 chr3 145902370 145902410 -13697373 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 7 1698 333 271 42 0 chr3 145904329 145904425 -13695358 - L2a LINE L2 -27 3399 3300 7 1698 366 302 125 48 chr3 145904560 145904855 -13694928 - L2a LINE L2 -378 3041 2724 7 1698 338 259 11 30 chr3 145904950 145905051 -13694732 + PB1D7 SINE Alu 15 113 -7 7 1698 707 158 1 30 chr3 145905179 145905957 -13693826 + (TG)n Simple_repeat Simple_repeat 1 755 0 7 1698 431 335 23 29 chr3 145906495 145906670 -13693113 - MIR SINE MIR -3 259 86 7 1698 258 250 0 0 chr3 145906755 145906827 -13692956 + (TG)n Simple_repeat Simple_repeat 2 73 0 7 1698 219 161 0 0 chr3 145906832 145906888 -13692895 + CT-rich Low_complexity Low_complexity 1 56 0 7 1698 351 0 0 0 chr3 145906888 145906927 -13692856 + (TG)n Simple_repeat Simple_repeat 2 40 0 7 1698 956 302 35 4 chr3 145906927 145907183 -13692600 - B4 SINE B4 -27 265 2 8 1698 586 153 35 0 chr3 145908043 145908187 -13691596 + (TG)n Simple_repeat Simple_repeat 1 149 0 8 1698 192 135 0 0 chr3 145908201 145908238 -13691545 + (TG)n Simple_repeat Simple_repeat 2 38 0 8 1698 264 111 31 16 chr3 145908695 145908759 -13691024 + (TG)n Simple_repeat Simple_repeat 2 66 0 8 1698 441 0 0 0 chr3 145908803 145908852 -13690931 + (GGA)n Simple_repeat Simple_repeat 2 50 0 8 1698 793 219 48 19 chr3 145908957 145909166 -13690617 + B3 SINE B2 2 216 0 8 1698 189 0 0 0 chr3 145909713 145909734 -13690049 + (CAAAA)n Simple_repeat Simple_repeat 5 25 0 8 1698 428 336 14 0 chr3 145909958 145910104 -13689679 - Tigger7 DNA MER2_type -2085 406 259 8 1698 305 306 0 0 chr3 145910165 145910237 -13689546 - Tigger7 DNA MER2_type -2382 109 38 8 1698 585 61 0 0 chr3 145910362 145910444 -13689339 + (TG)n Simple_repeat Simple_repeat 2 83 0 8 1698 270 254 0 0 chr3 145910575 145910630 -13689153 + (TATATG)n Simple_repeat Simple_repeat 1 55 0 8 1698 288 130 0 0 chr3 145910630 145910676 -13689107 + (CA)n Simple_repeat Simple_repeat 1 46 0 8 1698 222 359 0 61 chr3 145910768 145910866 -13688917 - MIRm SINE MIR -81 195 104 8 1698 711 281 21 5 chr3 145911144 145911330 -13688453 - ORR1E LTR MaLR -168 191 3 8 1698 282 302 101 54 chr3 145911631 145911799 -13687984 + MIRb SINE MIR 87 262 -6 8 1698 350 293 114 68 chr3 145912562 145912826 -13686957 - RMER12 LTR ERVK -334 988 713 8 1698 509 281 198 109 chr3 145913252 145913600 -13686183 - MTEa LTR MaLR 0 379 1 8 1698 412 253 88 98 chr3 145915393 145915608 -13684175 - B4 SINE B4 -79 213 1 8 1698 1156 75 7 0 chr3 145915775 145915922 -13683861 + B1_Mus1 SINE Alu 1 148 0 8 1698 1016 132 11 0 chr3 145917334 145917508 -13682275 + (TCCC)n Simple_repeat Simple_repeat 3 178 0 8 1698 300 246 14 14 chr3 145917508 145917571 -13682212 - HAL1-3A_ME LINE L1 -819 2039 1976 8 1698 690 235 162 83 chr3 145917600 145917865 -13681918 - B4 SINE B4 -6 286 1 8 1698 477 240 53 0 chr3 145917989 145918250 -13681533 + (ACTG)n Simple_repeat Simple_repeat 1 274 0 8 1698 353 194 159 44 chr3 145918849 145918962 -13680821 + Lx9 LINE L1 7513 7638 -6 8 1698 396 0 0 0 chr3 145920115 145920159 -13679624 + (CA)n Simple_repeat Simple_repeat 1 44 0 8 1698 23 0 0 0 chr3 145920387 145920410 -13679373 + AT_rich Low_complexity Low_complexity 1 23 0 8 1698 232 355 36 18 chr3 145920466 145920578 -13679205 - LTR28 LTR ERV1 -103 917 804 8 1698 745 284 79 26 chr3 145921797 145922113 -13677670 - ORR1E LTR MaLR 0 379 24 8 1698 398 94 0 15 chr3 145922575 145922640 -13677143 + (TG)n Simple_repeat Simple_repeat 1 64 0 8 1698 230 0 0 32 chr3 145922914 145922945 -13676838 + (CAAAA)n Simple_repeat Simple_repeat 4 33 0 8 1698 387 0 0 0 chr3 145925234 145925277 -13674506 + (TG)n Simple_repeat Simple_repeat 1 43 0 8 1698 240 302 80 23 chr3 145925282 145925370 -13674413 - PB1D7 SINE Alu -5 115 23 8 1698 396 184 0 0 chr3 145926096 145926199 -13673584 + CT-rich Low_complexity Low_complexity 2 104 0 8 1698 770 167 34 20 chr3 145926202 145926349 -13673434 - B1_Mur3 SINE Alu 0 149 1 8 1698 283 360 73 26 chr3 145926647 145926838 -13672945 - MIR SINE MIR -21 241 42 8 1698 257 279 0 71 chr3 145927068 145927153 -13672630 + MIRb SINE MIR 116 194 -74 8 1698 1029 216 10 24 chr3 145928233 145928442 -13671341 - B3 SINE B2 -3 213 8 8 1698 330 255 88 141 chr3 145929373 145929679 -13670104 + B4 SINE B4 3 292 0 8 1698 543 242 0 0 chr3 145929683 145929861 -13669922 + (CA)n Simple_repeat Simple_repeat 1 178 0 8 1698 180 238 0 0 chr3 145929885 145929948 -13669835 + (CA)n Simple_repeat Simple_repeat 1 63 0 8 1698 270 333 39 8 chr3 145930133 145930263 -13669520 - MIR SINE MIR -98 164 31 8 1698 384 241 32 72 chr3 145931360 145931485 -13668298 + PB1D7 SINE Alu 1 120 0 8 1698 612 93 0 0 chr3 145931655 145931752 -13668031 + (TG)n Simple_repeat Simple_repeat 1 97 0 8 1698 232 329 11 76 chr3 145931766 145931858 -13667925 - B4 SINE B4 0 292 207 8 1698 629 288 119 21 chr3 145933416 145933743 -13666040 - ORR1E LTR MaLR 0 359 1 8 1698 531 0 0 0 chr3 145933872 145933931 -13665852 + (CA)n Simple_repeat Simple_repeat 2 60 0 8 1698 261 232 0 0 chr3 145934865 145934921 -13664862 - Lx8 LINE L1 -3 7470 7415 8 1698 1092 164 44 19 chr3 145935554 145935759 -13664024 + MTD LTR MaLR 210 419 0 8 1698 294 298 99 65 chr3 145936434 145936755 -13663028 + MLT1A0 LTR MaLR 43 408 0 8 1698 227 281 200 19 chr3 145936880 145936985 -13662798 - MIRb SINE MIR -6 256 133 8 1698 405 0 0 0 chr3 145937070 145937115 -13662668 + (TC)n Simple_repeat Simple_repeat 2 46 0 8 1698 396 0 0 0 chr3 145937115 145937158 -13662625 + (TG)n Simple_repeat Simple_repeat 1 44 0 8 1698 232 180 0 20 chr3 145938004 145938055 -13661728 + C-rich Low_complexity Low_complexity 4 53 0 8 1698 952 288 60 18 chr3 145938783 145939143 -13660640 - MTD LTR MaLR 0 379 18 8 1698 536 213 38 45 chr3 145940527 145940684 -13659099 - ORR1E LTR MaLR -182 177 22 8 1698 442 279 82 0 chr3 145940974 145941121 -13658662 - MER112 DNA MER1_type -67 194 36 8 1698 504 288 0 0 chr3 145941195 145941313 -13658470 - MER105 DNA DNA -60 144 27 8 1698 670 319 30 70 chr3 145942594 145942864 -13656919 + B4 SINE B4 2 260 -32 8 1698 267 103 0 0 chr3 145942907 145942946 -13656837 + (CA)n Simple_repeat Simple_repeat 2 40 0 8 1698 445 272 119 10 chr3 145943676 145943869 -13655914 - ID_B1 SINE B4 -10 214 1 8 1698 191 219 0 0 chr3 145944560 145944601 -13655182 + MIRb SINE MIR 54 94 -174 8 1698 654 180 11 6 chr3 145944961 145945140 -13654643 + (CA)n Simple_repeat Simple_repeat 1 180 0 8 1698 485 226 139 0 chr3 145945625 145945762 -13654021 + B3A SINE B2 1 156 -42 8 1698 297 0 0 0 chr3 145945768 145945801 -13653982 + (CA)n Simple_repeat Simple_repeat 1 33 0 8 1698 22 0 0 0 chr3 145945876 145945898 -13653885 + AT_rich Low_complexity Low_complexity 1 22 0 8 1698 297 0 0 0 chr3 145946466 145946499 -13653284 + (ACATG)n Simple_repeat Simple_repeat 5 37 0 8 1698 378 0 0 0 chr3 145948817 145948859 -13650924 + (TC)n Simple_repeat Simple_repeat 1 42 0 8 1698 28 0 0 0 chr3 145950615 145950643 -13649140 + AT_rich Low_complexity Low_complexity 1 28 0 8 1698 2959 35 3 3 chr3 145952051 145952397 -13647386 - ORR1A1 LTR MaLR 0 346 1 8 1698 231 280 9 123 chr3 145952448 145952562 -13647221 - B4 SINE B4 0 292 192 8 1698 430 279 45 6 chr3 145952682 145952853 -13646930 + L1_Mur3 LINE L1 4413 4589 -1288 8 1698 180 0 0 0 chr3 145953257 145953277 -13646506 + (CAA)n Simple_repeat Simple_repeat 2 21 0 8 1698 279 343 106 6 chr3 145953522 145953692 -13646091 + MIR SINE MIR 43 229 -33 8 1698 475 322 174 29 chr3 145953810 145954430 -13645353 - L2 LINE L2 -836 2583 1874 8 1698 393 22 0 0 chr3 145954459 145954505 -13645278 + (GA)n Simple_repeat Simple_repeat 2 47 0 8 1698 235 230 0 47 chr3 145955412 145955476 -13644307 + T-rich Low_complexity Low_complexity 4 64 0 8 1698 730 309 71 46 chr3 145956103 145956694 -13643089 + Lx8 LINE L1 1234 1839 -4008 8 1698 36186 41 0 4 chr3 145956702 145961859 -13637924 + L1Md_T LINE L1 357 5589 -297 8 1698 8715 27 0 4 chr3 145961859 145962859 -13636924 + L1Md_T LINE L1 5590 6585 0 8 1698 2931 276 83 58 chr3 145962862 145965077 -13634706 + Lx8 LINE L1 6085 6990 -483 8 1698 385 208 94 63 chr3 145965082 145965241 -13634542 - RLTRETN_Mm LTR ERVK -3 319 156 8 1698 204 121 16 49 chr3 145965297 145965358 -13634425 + G-rich Low_complexity Low_complexity 2 60 0 8 1698 229 167 0 0 chr3 145965436 145965478 -13634305 - RLTR9A LTR ERVK -326 42 1 8 1698 1261 249 43 0 chr3 145965482 145965763 -13634020 + Lx8 LINE L1 7011 7303 -170 8 1698 351 311 67 13 chr3 145966317 145966467 -13633316 + RMER15 LTR ERVL 404 561 -14 8 1698 243 0 0 0 chr3 145966816 145966843 -13632940 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 8 1698 531 292 40 66 chr3 145966963 145967190 -13632593 + B4 SINE B4 6 226 -66 8 1698 396 0 0 0 chr3 145967209 145967253 -13632530 + (CATA)n Simple_repeat Simple_repeat 4 47 0 8 1698 528 207 0 0 chr3 145967281 145967402 -13632381 + GA-rich Low_complexity Low_complexity 4 124 0 8 1698 1134 226 132 12 chr3 145968140 145968467 -13631316 - ORR1D2 LTR MaLR 0 370 5 8 1698 189 171 0 0 chr3 145968537 145968572 -13631211 + A-rich Low_complexity Low_complexity 1 35 0 8 1698 507 230 6 12 chr3 145968614 145968781 -13631002 + CT-rich Low_complexity Low_complexity 1 166 0 8 1698 893 218 35 5 chr3 145968902 145969105 -13630678 + B3 SINE B2 8 216 0 8 1698 609 250 91 0 chr3 145969122 145969298 -13630485 + B3A SINE B2 7 198 0 8 1698 3514 10 0 0 chr3 145969711 145970100 -13629683 + L1Md_A LINE L1 6194 6582 0 8 1698 556 305 191 34 chr3 145970475 145971039 -13628744 + L2 LINE L2 2118 2770 -649 8 1698 1185 75 6 28 chr3 145971086 145971265 -13628518 + MTB_Mm LTR MaLR 233 407 0 8 1698 354 329 31 62 chr3 145971423 145971585 -13628198 - ORR1E LTR MaLR -202 157 1 8 1698 1353 220 54 11 chr3 145972034 145972388 -13627395 - ORR1D2 LTR MaLR 0 370 2 8 1698 667 261 17 22 chr3 145973275 145973455 -13626328 - Lx8 LINE L1 -939 6534 6356 8 1698 311 332 53 43 chr3 145973596 145973804 -13625979 + LTR78 LTR ERV1 10 219 -1085 8 1698 239 324 116 80 chr3 145973950 145974312 -13625471 + LTR78 LTR ERV1 474 848 -456 8 1698 640 261 37 32 chr3 145974691 145974791 -13624992 + RMER30 DNA MER1_type 5 110 -92 8 1698 327 25 0 0 chr3 145974791 145974831 -13624952 + (CA)n Simple_repeat Simple_repeat 1 40 0 8 1698 640 261 37 32 chr3 145974831 145974920 -13624863 + RMER30 DNA MER1_type 111 195 -7 8 1698 515 284 116 5 chr3 145974923 145975139 -13624644 + LTR50 LTR ERVL 549 788 -7 8 1698 543 256 74 0 chr3 145975722 145975843 -13623940 - ID_B1 SINE B4 -8 216 87 8 1698 496 297 76 40 chr3 145976298 145976575 -13623208 - B4 SINE B4 -5 287 1 8 1698 391 362 31 35 chr3 145976633 145976919 -13622864 - L1M5 LINE L1 -3378 2768 2484 9 1698 283 278 54 211 chr3 145977146 145977323 -13622460 + B4A SINE B4 89 232 -60 9 1698 499 265 95 18 chr3 145977323 145977492 -13622291 + B3A SINE B2 1 182 -16 9 1698 283 278 54 211 chr3 145977492 145977504 -13622279 + B4A SINE B4 233 233 -59 9 1698 270 81 0 0 chr3 145977504 145977541 -13622242 + (CAA)n Simple_repeat Simple_repeat 2 38 0 9 1698 283 278 54 211 chr3 145977541 145977592 -13622191 + B4A SINE B4 233 292 0 9 1698 3146 32 45 3 chr3 145977711 145978091 -13621692 + MTA_Mm LTR MaLR 1 396 0 9 1698 201 262 30 15 chr3 145978456 145978522 -13621261 - L4 LINE RTE -254 1775 1709 9 1698 595 282 62 103 chr3 145979159 145979527 -13620256 + ORR1E LTR MaLR 1 353 -6 9 1698 244 310 0 14 chr3 145980639 145980711 -13619072 + L2b LINE L2 3296 3366 -9 9 1698 303 336 31 50 chr3 145980747 145980907 -13618876 - ID_B1 SINE B4 -31 193 37 9 1698 363 239 131 55 chr3 145980907 145981064 -13618719 - ORR1D2 LTR MaLR 0 379 194 9 1698 1224 231 36 58 chr3 145981101 145981621 -13618162 - ORR1D2-int LTR MaLR -67 1303 904 9 1698 228 135 0 0 chr3 145982631 145982668 -13617115 + (CA)n Simple_repeat Simple_repeat 1 37 0 9 1698 245 287 25 50 chr3 145982698 145982819 -13616964 - MIRc SINE MIR -114 154 37 9 1698 375 23 0 0 chr3 145982854 145982898 -13616885 + (TG)n Simple_repeat Simple_repeat 2 45 0 9 1698 198 0 0 0 chr3 145982898 145982920 -13616863 + (CA)n Simple_repeat Simple_repeat 1 22 0 9 1698 349 310 23 35 chr3 145983210 145983384 -13616399 - L1MA9 LINE L1 -337 5975 5804 9 1698 249 186 56 14 chr3 145983384 145983455 -13616328 + (TCTA)n Simple_repeat Simple_repeat 2 75 0 9 1698 258 335 60 66 chr3 145983594 145983776 -13616007 - ORR1E LTR MaLR -165 194 14 9 1698 213 39 0 0 chr3 145984653 145984679 -13615104 + (TAA)n Simple_repeat Simple_repeat 2 27 0 9 1698 426 274 137 36 chr3 145985863 145986347 -13613436 + L1MA4 LINE L1 5422 6022 -278 9 1698 696 215 0 0 chr3 145986348 145986583 -13613200 + GA-rich Low_complexity Low_complexity 1 235 0 9 1698 348 288 24 20 chr3 145986609 145986759 -13613024 + RSINE1 SINE B4 6 156 -9 9 1698 258 116 0 0 chr3 145986762 145986805 -13612978 + (CA)n Simple_repeat Simple_repeat 2 44 0 9 1698 218 143 20 39 chr3 145987298 145987349 -13612434 - B1F SINE Alu -12 137 88 9 1698 566 122 10 0 chr3 145988787 145988885 -13610898 + (TAGA)n Simple_repeat Simple_repeat 1 99 0 9 1698 509 271 75 60 chr3 145988907 145989107 -13610676 + B3 SINE B2 9 211 -5 9 1698 479 239 0 66 chr3 145989126 145989247 -13610536 + PB1D9 SINE Alu 3 115 -5 9 1698 264 284 49 57 chr3 145989252 145989375 -13610408 + Lx9 LINE L1 5848 5969 -1675 9 1698 338 336 22 0 chr3 145989564 145989701 -13610082 + Lx8 LINE L1 6180 6319 -1154 9 1698 666 25 0 0 chr3 145990013 145990093 -13609690 + (TAAA)n Simple_repeat Simple_repeat 2 81 0 9 1698 22 0 0 0 chr3 145990447 145990469 -13609314 + GC_rich Low_complexity Low_complexity 1 22 0 9 1698 23 0 0 0 chr3 145991690 145991713 -13608070 + AT_rich Low_complexity Low_complexity 1 23 0 9 1698 1254 244 56 25 chr3 145991716 145992074 -13607709 + ORR1D2 LTR MaLR 1 369 -1 9 1698 227 240 165 10 chr3 145992566 145992663 -13607120 + L1MC4a LINE L1 7030 7141 -741 9 1698 459 332 63 75 chr3 145992801 145993120 -13606663 + MLT1J LTR MaLR 100 414 -98 9 1698 297 281 110 26 chr3 145994486 145994623 -13605160 + MLT1A1 LTR MaLR 216 391 -17 9 1698 852 249 52 35 chr3 145994864 145995093 -13604690 + ORR1E LTR MaLR 1 233 -126 9 1698 1210 222 107 52 chr3 145995276 145995561 -13604222 - MTD LTR MaLR -14 405 96 9 1698 677 78 242 42 chr3 145995561 145995681 -13604102 - B1_Mus1 SINE Alu 0 148 5 9 1698 1210 222 107 52 chr3 145995681 145995779 -13604004 - MTD LTR MaLR -324 95 1 9 1698 412 333 185 12 chr3 145995985 145996228 -13603555 + MLT1D LTR MaLR 107 391 -114 9 1698 667 217 148 6 chr3 145996244 145996406 -13603377 + MTD LTR MaLR 4 188 -231 9 1698 1203 89 0 6 chr3 145996636 145997003 -13602780 + (CA)n Simple_repeat Simple_repeat 1 364 0 9 1698 1134 82 7 0 chr3 145998211 145998357 -13601426 + B1_Mus2 SINE Alu 1 147 0 9 1698 215 31 31 0 chr3 145998357 145998389 -13601394 + (TAAAA)n Simple_repeat Simple_repeat 2 34 0 9 1698 358 123 0 0 chr3 145999135 145999192 -13600591 - ORR1A2 LTR MaLR -8 319 263 9 1698 414 248 46 8 chr3 145999459 145999589 -13600194 - L1MC1 LINE L1 -81 6252 6118 9 1698 653 213 6 0 chr3 145999710 145999884 -13599899 + (TG)n Simple_repeat Simple_repeat 1 175 0 9 1698 510 236 19 0 chr3 145999894 146000000 -13599783 - B4A SINE B4 -8 284 177 9 1698 279 270 228 55 chr3 146000001 146000146 -13599637 - B4A SINE B4 -122 170 1 1 1698 303 93 0 0 chr3 146000205 146000248 -13599535 + (CA)n Simple_repeat Simple_repeat 1 43 0 2 1698 26 0 0 0 chr3 146000669 146000695 -13599088 + AT_rich Low_complexity Low_complexity 1 26 0 3 1698 23 0 0 0 chr3 146000753 146000776 -13599007 + AT_rich Low_complexity Low_complexity 1 23 0 4 1698 357 43 0 0 chr3 146001373 146001420 -13598363 + (CA)n Simple_repeat Simple_repeat 1 47 0 5 1698 533 283 33 40 chr3 146002382 146002533 -13597250 + MTE2b LTR MaLR 16 165 -214 6 1698 295 221 32 0 chr3 146002633 146002705 -13597078 - ORR1E LTR MaLR -6 373 290 7 1698 238 346 56 0 chr3 146002696 146002803 -13596980 - ORR1E LTR MaLR -266 113 1 7 1698 240 193 70 0 chr3 146002804 146002861 -13596922 + MTEb LTR MaLR 316 376 -3 8 1698 405 0 0 0 chr3 146003095 146003140 -13596643 + (CA)n Simple_repeat Simple_repeat 2 46 0 9 1698 267 31 0 0 chr3 146003163 146003195 -13596588 + (TTTTA)n Simple_repeat Simple_repeat 2 33 0 1 1698 264 320 133 44 chr3 146003646 146003826 -13595957 - MER58C DNA MER1_type 0 215 20 1 1698 363 370 52 0 chr3 146003834 146003988 -13595795 - L3 LINE CR1 -71 4418 4257 1 1698 792 338 29 6 chr3 146004080 146004393 -13595390 - Tigger15a DNA TcMar -176 539 220 1 1698 402 21 0 0 chr3 146004399 146004446 -13595337 + (CA)n Simple_repeat Simple_repeat 1 47 0 1 1698 234 232 18 77 chr3 146004484 146004652 -13595131 + RMER17C LTR ERVK 62 219 -191 1 1698 477 287 83 70 chr3 146005960 146006298 -13593485 - MTEa LTR MaLR 0 379 19 1 1698 193 287 198 27 chr3 146008442 146008553 -13591230 - L2b LINE L2 -18 3357 3228 1 1698 494 180 6 23 chr3 146009289 146009465 -13590318 + (TGGA)n Simple_repeat Simple_repeat 3 175 0 1 1698 267 319 83 41 chr3 146009562 146009683 -13590100 - L2a LINE L2 -14 3412 3287 1 1698 1273 189 80 18 chr3 146009909 146010184 -13589599 + RMER21B LTR ERV1 276 567 -275 2 1698 271 286 28 28 chr3 146010554 146010662 -13589121 - RMER21B LTR ERV1 -647 195 88 2 1698 232 386 55 41 chr3 146011047 146011193 -13588590 + Charlie9 DNA MER1_type 1 148 -2609 2 1698 694 117 0 59 chr3 146012391 146012509 -13587274 - ID_B1 SINE B4 -3 221 111 2 1698 854 230 138 40 chr3 146013230 146013506 -13586277 - MTE2a LTR MaLR -20 359 57 2 1698 477 264 0 83 chr3 146013819 146013939 -13585844 - RMER30 DNA MER1_type -9 193 84 2 1699 229 231 14 122 chr3 146014267 146014308 -13585475 + MT2B2 LTR ERVL 133 165 -419 2 1699 254 159 0 83 chr3 146014308 146014356 -13585427 + B1_Mus2 SINE Alu 2 45 -102 2 1699 522 0 0 0 chr3 146014466 146014524 -13585259 + (TC)n Simple_repeat Simple_repeat 1 58 0 2 1699 195 322 34 0 chr3 146014659 146014718 -13585065 + MER5B DNA MER1_type 4 64 -114 2 1699 285 203 0 17 chr3 146014800 146014860 -13584923 - ID4 SINE ID 0 83 25 3 1699 264 297 99 21 chr3 146014973 146015114 -13584669 + MIRb SINE MIR 117 268 0 3 1699 482 333 152 16 chr3 146016396 146016765 -13583018 - MLT1D LTR MaLR 0 505 87 3 1699 555 16 0 0 chr3 146017407 146017471 -13582312 + (GA)n Simple_repeat Simple_repeat 1 64 0 3 1699 1208 54 0 7 chr3 146019115 146019264 -13580519 - B1_Mus1 SINE Alu 0 148 1 3 1699 37506 31 6 8 chr3 146019296 146024672 -13575111 + L1Md_T LINE L1 233 5586 -297 3 1699 8467 40 0 0 chr3 146024673 146025668 -13574115 + L1Md_T LINE L1 5588 6582 0 3 1699 389 283 56 19 chr3 146025829 146025937 -13573846 - B1F SINE Alu -33 116 5 3 1699 2003 151 56 22 chr3 146025995 146026354 -13573429 + MTC LTR MaLR 51 421 0 3 1699 939 94 0 0 chr3 146027081 146027208 -13572575 - B1_Mm SINE Alu 0 147 21 3 1699 478 314 0 24 chr3 146027185 146027206 -13572577 + ID SINE ID 65 82 -142 3 1699 371 351 22 22 chr3 146027206 146027343 -13572440 + B1F1 SINE Alu 2 138 -11 4 1699 227 393 8 17 chr3 146028400 146028519 -13571264 - L2 LINE L2 -558 2861 2744 4 1699 6452 65 5 0 chr3 146028733 146029536 -13570247 + L1_Mus1 LINE L1 5761 6567 0 4 1699 1776 137 8 223 chr3 146029550 146030020 -13569763 + ORR1C2 LTR MaLR 16 384 0 4 1699 861 305 76 0 chr3 146030152 146030506 -13569277 - L1MB7 LINE L1 -16 6168 5788 4 1699 1234 311 71 18 chr3 146030507 146030959 -13568824 + MLT2B1 LTR ERVL 1 476 -44 4 1699 1237 88 0 0 chr3 146030939 146031099 -13568684 - B2_Mm2 SINE B2 -22 173 14 4 1699 394 103 169 22 chr3 146031090 146031179 -13568604 + MLT2B1 LTR ERVL 462 563 0 4 1699 299 204 216 14 chr3 146031180 146031319 -13568464 - L1M4 LINE L1 -371 5813 5647 4 1699 1180 75 0 0 chr3 146031417 146031564 -13568219 - B1_Mus2 SINE Alu 0 147 1 4 1699 699 183 33 0 chr3 146032356 146032476 -13567307 + B1_Mur1 SINE Alu 25 148 -1 4 1699 433 299 22 7 chr3 146033221 146033356 -13566427 - ID_B1 SINE B4 -8 216 80 5 1699 295 346 60 92 chr3 146033508 146033759 -13566024 + MLT2D LTR ERVL 93 335 -79 5 1699 776 213 0 0 chr3 146033953 146034094 -13565689 + B1F SINE Alu 1 141 -8 5 1699 25 0 0 0 chr3 146034964 146034989 -13564794 + AT_rich Low_complexity Low_complexity 1 25 0 5 1699 2224 69 3 7 chr3 146035097 146035389 -13564394 + ORR1A2 LTR MaLR 29 319 -8 5 1699 537 16 0 0 chr3 146036026 146036088 -13563695 + (TG)n Simple_repeat Simple_repeat 1 62 0 5 1699 280 273 45 15 chr3 146036095 146036162 -13563621 - RSINE1 SINE B4 -17 148 80 5 1699 219 69 0 0 chr3 146036162 146036191 -13563592 + (TC)n Simple_repeat Simple_repeat 2 30 0 5 1699 464 177 80 40 chr3 146036199 146036299 -13563484 - PB1D9 SINE Alu -7 113 10 5 1699 246 323 7 127 chr3 146036299 146036334 -13563449 - MT2B LTR ERVL -336 247 141 5 1699 2566 207 45 8 chr3 146037152 146037667 -13562116 - RMER5 LTR ERV1 0 534 1 6 1699 313 159 0 39 chr3 146038811 146038878 -13560905 - B2_Mm2 SINE B2 -107 109 47 6 1699 1269 80 11 33 chr3 146038926 146039108 -13560675 - B2_Mm1t SINE B2 -15 178 1 6 1699 2429 204 63 4 chr3 146041182 146041674 -13558109 - RMER5 LTR ERV1 0 534 14 6 1699 310 253 0 12 chr3 146041847 146041927 -13557856 + ID4 SINE ID 1 79 -4 6 1699 508 225 222 29 chr3 146042122 146042397 -13557386 - Lx9 LINE L1 -4 7640 7313 6 1699 419 284 40 122 chr3 146042469 146042722 -13557061 - L1MC5 LINE L1 -386 7575 7344 6 1699 3093 66 5 8 chr3 146043531 146043928 -13555855 - MTA_Mm LTR MaLR 0 396 1 6 1699 210 352 46 0 chr3 146044438 146044546 -13555237 - MIRc SINE MIR -110 158 46 6 1699 215 344 54 42 chr3 146044952 146045119 -13554664 + L2 LINE L2 2669 2837 -582 6 1699 779 83 19 0 chr3 146045287 146045395 -13554388 + B1_Mus1 SINE Alu 33 142 -6 7 1699 1014 98 4 21 chr3 146045395 146045635 -13554148 + (GAAA)n Simple_repeat Simple_repeat 1 236 0 7 1699 273 298 174 6 chr3 146045762 146045934 -13553849 + MLT1D LTR MaLR 280 480 -25 7 1699 373 127 0 0 chr3 146046463 146046518 -13553265 - ORR1A3 LTR MaLR 0 326 272 7 1699 296 0 0 49 chr3 146046587 146046628 -13553155 + (TTTTTG)n Simple_repeat Simple_repeat 2 40 0 7 1699 7868 75 20 2 chr3 146046862 146048558 -13551225 - L1_Mus3 LINE L1 0 6638 4929 7 1699 1863 112 32 18 chr3 146048558 146048839 -13550944 - ORR1A3 LTR MaLR -41 285 1 7 1699 249 265 71 10 chr3 146048855 146048954 -13550829 - RMER13B LTR ERVK -9 899 795 7 1699 690 225 187 18 chr3 146048932 146049162 -13550621 - RLTR26 LTR ERVK -560 249 1 7 1699 195 269 0 0 chr3 146050393 146050534 -13549249 + (TG)n Simple_repeat Simple_repeat 2 142 0 7 1699 563 222 28 49 chr3 146050537 146050679 -13549104 - RSINE1 SINE B4 -4 161 23 7 1699 525 186 51 10 chr3 146050710 146050808 -13548975 - U6 snRNA snRNA -5 102 1 8 1699 180 300 93 65 chr3 146051388 146051495 -13548288 - L2 LINE L2 -1539 1880 1771 8 1699 339 386 80 35 chr3 146051827 146051910 -13547873 - L2 LINE L2 -2128 1291 1210 8 1699 1649 214 39 3 chr3 146051910 146052267 -13547516 + ORR1D1 LTR MaLR 5 374 0 8 1699 339 386 80 35 chr3 146052267 146052452 -13547331 - L2 LINE L2 -2210 1209 1017 8 1699 3736 113 31 46 chr3 146052452 146053062 -13546721 - MT2B LTR ERVL 0 601 1 8 1699 339 386 80 35 chr3 146053062 146053396 -13546387 - L2 LINE L2 -2403 1016 661 8 1699 430 347 90 52 chr3 146053396 146053740 -13546043 + ORR1E LTR MaLR 1 357 -2 8 1699 251 371 85 28 chr3 146053746 146054098 -13545685 - L2 LINE L2 -2756 663 292 8 1699 1006 250 14 5 chr3 146054772 146054985 -13544798 + B3 SINE B2 2 216 0 8 1699 614 320 29 0 chr3 146055253 146055425 -13544358 - B4 SINE B4 -115 177 1 8 1699 1461 53 10 31 chr3 146055435 146055630 -13544153 - B2_Mm1t SINE B2 -1 192 2 8 1699 323 45 0 22 chr3 146056613 146056659 -13543124 + (CCCCCA)n Simple_repeat Simple_repeat 3 47 0 8 1699 844 230 20 60 chr3 146057197 146057396 -13542387 + B3A SINE B2 8 198 0 8 1699 216 0 0 0 chr3 146057537 146057561 -13542222 + (CAAAA)n Simple_repeat Simple_repeat 1 24 0 9 1699 641 284 48 16 chr3 146057931 146058117 -13541666 + B4 SINE B4 34 225 -67 9 1699 564 29 0 0 chr3 146058132 146058202 -13541581 + (TAGA)n Simple_repeat Simple_repeat 3 72 0 9 1699 259 306 101 126 chr3 146058375 146058573 -13541210 + B4A SINE B4 84 276 -16 9 1699 1194 55 0 7 chr3 146058772 146058920 -13540863 + B1_Mm SINE Alu 1 147 0 9 1699 186 71 0 0 chr3 146058925 146058953 -13540830 + (CAAAC)n Simple_repeat Simple_repeat 2 29 0 9 1699 396 0 0 0 chr3 146059729 146059773 -13540010 + (TG)n Simple_repeat Simple_repeat 2 45 0 9 1699 180 382 26 26 chr3 146059908 146060021 -13539762 + L3 LINE CR1 2923 3035 -1454 9 1699 492 268 0 0 chr3 146060778 146060875 -13538908 + PB1 SINE Alu 3 99 -28 9 1699 660 317 37 21 chr3 146061051 146061238 -13538545 + B4A SINE B4 99 288 -4 9 1699 236 30 0 29 chr3 146061266 146061300 -13538483 + (CCCCCT)n Simple_repeat Simple_repeat 4 36 0 1 1699 1113 102 0 0 chr3 146061639 146061786 -13537997 - B1_Mus1 SINE Alu 0 148 2 1 1699 296 246 15 15 chr3 146061986 146062052 -13537731 - ID4 SINE ID -16 67 2 1 1699 468 51 0 0 chr3 146062085 146062144 -13537639 + (TG)n Simple_repeat Simple_repeat 2 60 0 1 1699 180 259 101 45 chr3 146062676 146062765 -13537018 - L2b LINE L2 -57 3318 3225 1 1699 300 330 39 104 chr3 146062854 146063084 -13536699 + ORR1E LTR MaLR 1 215 -144 1 1699 391 308 176 23 chr3 146063570 146063771 -13536012 - L2a LINE L2 -51 3375 3133 1 1699 600 14 0 0 chr3 146063771 146063840 -13535943 + (TG)n Simple_repeat Simple_repeat 1 69 0 1 1699 397 289 170 50 chr3 146063840 146064184 -13535599 - L2a LINE L2 -294 3132 2751 1 1699 686 302 57 38 chr3 146064811 146065073 -13534710 + Charlie1b DNA MER1_type 1 267 -256 1 1699 214 68 44 22 chr3 146065408 146065453 -13534330 + (CAAAA)n Simple_repeat Simple_repeat 1 46 0 1 1699 358 282 10 183 chr3 146065460 146065471 -13534312 - RLTR25B LTR ERVK -61 1042 1032 1 1699 218 56 0 27 chr3 146065471 146065508 -13534275 + (CCAA)n Simple_repeat Simple_repeat 2 37 0 1 1699 4714 137 45 59 chr3 146065508 146066379 -13533404 - RLTR25B LTR ERVK -72 1031 1 1 1699 21 0 0 0 chr3 146067934 146067955 -13531828 + GC_rich Low_complexity Low_complexity 1 21 0 1 1699 196 265 112 67 chr3 146068868 146068957 -13530826 - MIRm SINE MIR -117 159 67 1 1699 310 233 38 14 chr3 146069334 146069441 -13530342 + PB1 SINE Alu 15 124 -3 1 1699 368 261 0 64 chr3 146069554 146069648 -13530135 - PB1D10 SINE Alu -8 109 22 1 1699 270 318 93 0 chr3 146069559 146069666 -13530117 - ID_B1 SINE B4 -29 195 79 1 1699 206 246 14 97 chr3 146069951 146070023 -13529760 - L2c LINE L2 0 3387 3322 1 1699 327 272 58 0 chr3 146070875 146070978 -13528805 + PB1D10 SINE Alu 1 109 -8 1 1699 505 219 13 127 chr3 146071101 146071258 -13528525 - RMER30 DNA MER1_type -53 149 11 1 1699 23 0 0 0 chr3 146071545 146071568 -13528215 + AT_rich Low_complexity Low_complexity 1 23 0 1 1699 3630 184 67 107 chr3 146071610 146072624 -13527159 + RMER19B LTR ERVK 1 902 0 1 1699 747 206 8 0 chr3 146072624 146072755 -13527028 + B1_Mur3 SINE Alu 5 136 -13 1 1699 216 0 0 0 chr3 146072755 146072779 -13527004 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 1 1699 23 0 0 0 chr3 146073602 146073625 -13526158 + AT_rich Low_complexity Low_complexity 1 23 0 1 1699 180 0 0 0 chr3 146073715 146073735 -13526048 + (TG)n Simple_repeat Simple_repeat 1 20 0 1 1699 392 259 11 11 chr3 146073814 146073904 -13525879 - B4 SINE B4 -17 275 186 1 1699 1141 136 21 16 chr3 146074023 146074210 -13525573 - B2_Mm2 SINE B2 -5 190 3 1 1699 321 309 73 2 chr3 146074317 146074442 -13525341 - B4A SINE B4 -141 151 4 1 1699 229 354 88 33 chr3 146075130 146075311 -13524472 + MIRb SINE MIR 43 233 -35 1 1699 1134 44 7 0 chr3 146076486 146076623 -13523160 + B1_Mm SINE Alu 1 138 -9 1 1699 279 0 0 0 chr3 146076623 146076654 -13523129 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1 1699 686 276 169 14 chr3 146076979 146077269 -13522514 - MLT1F2 LTR MaLR -7 553 219 1 1699 288 234 52 41 chr3 146078006 146078114 -13521669 + MTEa LTR MaLR 106 214 -165 1 1699 739 164 16 0 chr3 146079260 146079382 -13520401 + B1_Mus1 SINE Alu 7 130 -18 1 1699 222 136 0 0 chr3 146079394 146079438 -13520345 + (C)n Simple_repeat Simple_repeat 1 44 0 1 1699 315 297 102 0 chr3 146079514 146079632 -13520151 - ORR1E LTR MaLR -228 131 2 1 1699 717 269 99 81 chr3 146079836 146080208 -13519575 - MTE2b LTR MaLR 0 379 1 1 1699 226 281 0 45 chr3 146080282 146080349 -13519434 + tRNA-Gly-GGY tRNA tRNA 2 65 -9 1 1699 1093 142 75 16 chr3 146080289 146080475 -13519308 + B3 SINE B2 15 211 -5 1 1699 233 367 76 27 chr3 146083887 146084072 -13515711 - L2c LINE L2 -257 3130 2937 1 1699 437 328 102 26 chr3 146084594 146085429 -13514354 - L1M2 LINE L1 -772 5528 4620 1 1699 604 206 156 32 chr3 146086793 146086979 -13512804 - B3 SINE B2 -7 209 1 1 1699 200 168 40 50 chr3 146087085 146087185 -13512598 + (TTATA)n Simple_repeat Simple_repeat 5 103 0 1 1699 36 53 0 0 chr3 146087191 146087248 -13512535 + AT_rich Low_complexity Low_complexity 1 57 0 1 1699 243 0 0 0 chr3 146087260 146087287 -13512496 + (TG)n Simple_repeat Simple_repeat 2 28 0 1 1699 1503 199 122 84 chr3 146087549 146088154 -13511629 - RMER17C-int LTR ERVK 0 3238 2611 1 1699 232 244 34 25 chr3 146088155 146088273 -13511510 + (TATAA)n Simple_repeat Simple_repeat 5 123 0 1 1699 379 223 27 59 chr3 146088287 146088473 -13511310 + (TATAA)n Simple_repeat Simple_repeat 1 180 0 1 1699 322 224 58 12 chr3 146088418 146088590 -13511193 + (TA)n Simple_repeat Simple_repeat 1 180 0 1 1699 206 79 53 0 chr3 146088686 146088724 -13511059 + (TA)n Simple_repeat Simple_repeat 2 41 0 1 1699 495 170 154 14 chr3 146089593 146089736 -13510047 - ORR1D1 LTR MaLR 0 374 212 1 1699 815 186 21 32 chr3 146089744 146089933 -13509850 - ORR1D1 LTR MaLR -112 262 76 1 1699 464 239 91 66 chr3 146091336 146091457 -13508326 - RSINE1 SINE B4 -38 127 4 1 1699 509 312 109 40 chr3 146091884 146092131 -13507652 - RMER12 LTR ERVK -2 1320 1057 1 1699 4124 216 104 39 chr3 146092169 146092526 -13507257 - RMER12 LTR ERVK -131 1191 770 1 1699 240 35 0 0 chr3 146092526 146092555 -13507228 + (TGGA)n Simple_repeat Simple_repeat 1 29 0 1 1699 4124 216 104 39 chr3 146092555 146093316 -13506467 - RMER12 LTR ERVK -553 769 2 1 1699 325 228 48 81 chr3 146094276 146094400 -13505383 - B3A SINE B2 -75 123 4 1 1699 1305 218 102 85 chr3 146095018 146095429 -13504354 - MTD LTR MaLR 0 419 2 1 1699 303 261 16 74 chr3 146096099 146096289 -13503494 + (CTGGGG)n Simple_repeat Simple_repeat 1 179 0 1 1699 1875 153 80 0 chr3 146096388 146096740 -13503043 - RLTR14 LTR ERV1 0 382 3 1 1699 516 180 281 0 chr3 146097173 146097312 -13502471 + B3 SINE B2 39 216 0 1 1699 362 237 161 0 chr3 146097405 146097523 -13502260 - B1_Mur3 SINE Alu -11 138 2 1 1699 412 244 12 0 chr3 146098081 146098167 -13501616 + B3 SINE B2 1 87 -129 1 1699 777 222 52 21 chr3 146099156 146099349 -13500434 - B3 SINE B2 -17 199 1 1 1699 180 77 0 0 chr3 146100382 146100408 -13499375 + (TGG)n Simple_repeat Simple_repeat 1 26 0 1 1699 291 256 208 69 chr3 146100559 146100572 -13499211 + ID_B1 SINE B4 73 218 -4 1 1699 382 257 244 17 chr3 146100572 146100687 -13499096 + B1_Mur1 SINE Alu 3 143 -6 1 1699 1247 21 0 0 chr3 146100696 146100837 -13498946 + B1_Mus1 SINE Alu 2 142 -6 1 1699 183 42 0 0 chr3 146100838 146100862 -13498921 + (GA)n Simple_repeat Simple_repeat 2 25 0 1 1699 1696 31 0 0 chr3 146104024 146104216 -13495567 - B2_Mm1a SINE B2 0 193 2 1 1699 257 170 0 21 chr3 146104767 146104815 -13494968 - B4 SINE B4 0 292 246 1 1699 243 0 0 0 chr3 146104815 146104842 -13494941 + (TG)n Simple_repeat Simple_repeat 1 27 0 1 1699 284 160 0 20 chr3 146104842 146104893 -13494890 - B4 SINE B4 0 292 243 1 1699 251 286 120 120 chr3 146107010 146107185 -13492598 + Tigger9b DNA MER2_type 5 179 -445 1 1699 3568 23 2 0 chr3 146107390 146107785 -13491998 - MTA_Mm LTR MaLR 0 396 1 1 1699 684 241 24 12 chr3 146107823 146107991 -13491792 - B3A SINE B2 -28 170 1 1 1699 1128 180 50 0 chr3 146108460 146108660 -13491123 - RMER15 LTR ERVL -1 574 365 1 1699 1194 68 83 22 chr3 146108664 146108844 -13490939 - MTB LTR MaLR -8 392 202 1 1699 1538 72 0 5 chr3 146109503 146109699 -13490084 + B2_Mm2 SINE B2 1 195 0 1 1699 636 302 130 96 chr3 146109832 146110209 -13489574 + MLT1B LTR MaLR 1 390 0 1 1699 184 129 26 195 chr3 146110819 146110896 -13488887 + L3 LINE CR1 4116 4179 -310 1 1699 803 193 27 7 chr3 146111080 146111226 -13488557 - B1_Mur1 SINE Alu 0 149 1 1 1699 899 239 144 32 chr3 146111971 146112256 -13487527 + MTE2b LTR MaLR 63 379 0 1 1699 1612 157 169 0 chr3 146114427 146114764 -13485019 + ORR1B1 LTR MaLR 1 394 0 1 1699 234 286 14 41 chr3 146114786 146114859 -13484924 - MER57E1 LTR ERV1 -293 79 9 1 1699 1879 157 155 8 chr3 146115108 146115475 -13484308 + MTC LTR MaLR 1 421 0 1 1699 185 256 0 0 chr3 146116227 146116266 -13483517 + L2b LINE L2 3293 3331 -44 1 1699 582 211 28 0 chr3 146118825 146118934 -13480849 + PB1D9 SINE Alu 9 120 0 1 1699 583 258 85 35 chr3 146118961 146119162 -13480621 - MER2 DNA MER2_type -8 337 127 1 1699 267 114 0 0 chr3 146120845 146120889 -13478894 + (TATATG)n Simple_repeat Simple_repeat 1 44 0 1 1699 333 0 0 0 chr3 146120943 146120980 -13478803 + (CA)n Simple_repeat Simple_repeat 1 37 0 1 1699 259 270 71 28 chr3 146121001 146121142 -13478641 + Lx8 LINE L1 6996 7142 -331 1 1699 186 43 0 0 chr3 146121476 146121499 -13478284 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 1 1699 203 179 0 0 chr3 146121914 146121953 -13477830 + T-rich Low_complexity Low_complexity 1 39 0 1 1699 983 73 0 49 chr3 146121961 146122104 -13477679 - B1_Mus1 SINE Alu 0 148 13 1 1699 22 0 0 0 chr3 146122153 146122175 -13477608 + AT_rich Low_complexity Low_complexity 1 22 0 1 1699 1353 62 23 0 chr3 146122220 146122397 -13477386 - B2_Mm2 SINE B2 -14 181 1 1 1699 253 169 0 31 chr3 146122449 146122504 -13477279 - B1F SINE Alu 0 149 67 1 1699 1208 47 0 13 chr3 146123273 146123423 -13476360 + B1_Mus1 SINE Alu 1 148 0 1 1699 695 101 18 0 chr3 146123447 146123556 -13476227 + (GAAA)n Simple_repeat Simple_repeat 2 112 0 1 1699 3231 53 0 2 chr3 146123937 146124334 -13475449 + MTA_Mm LTR MaLR 1 396 0 1 1699 24 0 0 0 chr3 146124502 146124526 -13475257 + AT_rich Low_complexity Low_complexity 1 24 0 2 1699 24 53 0 0 chr3 146124713 146124751 -13475032 + AT_rich Low_complexity Low_complexity 1 38 0 2 1699 249 83 0 0 chr3 146125351 146125387 -13474396 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 2 1699 1085 44 22 0 chr3 146125387 146125524 -13474259 - B1_Mus1 SINE Alu -8 140 1 2 1699 267 255 118 0 chr3 146126426 146126528 -13473255 - PB1D10 SINE Alu -2 115 2 2 1699 674 186 215 0 chr3 146128079 146128256 -13471527 + B3 SINE B2 2 216 0 2 1699 30 0 0 0 chr3 146128734 146128764 -13471019 + AT_rich Low_complexity Low_complexity 1 30 0 2 1699 492 239 32 32 chr3 146129834 146129990 -13469793 - MER3 DNA MER1_type -36 173 18 2 1699 180 97 0 0 chr3 146130099 146130130 -13469653 + (T)n Simple_repeat Simple_repeat 1 31 0 2 1699 1147 54 0 39 chr3 146130130 146130283 -13469500 - B1_Mus2 SINE Alu 0 147 1 2 1699 231 36 0 0 chr3 146130324 146130352 -13469431 + (TA)n Simple_repeat Simple_repeat 2 29 0 2 1699 22 70 0 0 chr3 146131179 146131222 -13468561 + AT_rich Low_complexity Low_complexity 1 43 0 2 1699 513 267 9 0 chr3 146131370 146131475 -13468308 + PB1D10 SINE Alu 1 106 -11 2 1699 198 0 0 0 chr3 146131611 146131633 -13468150 + (TG)n Simple_repeat Simple_repeat 1 22 0 2 1699 860 125 59 0 chr3 146131726 146131862 -13467921 + B1_Mus1 SINE Alu 5 148 0 2 1699 189 94 0 0 chr3 146132853 146132885 -13466898 + (CAAAAA)n Simple_repeat Simple_repeat 5 36 0 2 1699 1414 165 130 33 chr3 146133002 146133309 -13466474 + ORR1D1 LTR MaLR 1 337 -37 2 1699 180 0 0 0 chr3 146133310 146133330 -13466453 + (TCTG)n Simple_repeat Simple_repeat 2 21 0 2 1699 1192 74 0 0 chr3 146133388 146133536 -13466247 - B1_Mus1 SINE Alu 0 148 1 2 1699 267 159 0 0 chr3 146133536 146133580 -13466203 + ORR1D1 LTR MaLR 341 384 0 2 1699 413 239 92 0 chr3 146133580 146133689 -13466094 + ORR1D1-int LTR MaLR 1 119 -1251 2 1699 416 297 57 73 chr3 146133695 146133942 -13465841 + RLTR18B LTR ERVK 25 267 -245 2 1699 711 182 113 104 chr3 146134217 146134438 -13465345 + ORR1D1-int LTR MaLR 1148 1370 0 2 1699 1332 219 54 39 chr3 146134438 146134770 -13465013 + ORR1D1 LTR MaLR 38 374 0 2 1699 574 281 13 70 chr3 146134872 146135029 -13464754 + B3A SINE B2 47 194 -4 2 1699 22 0 0 0 chr3 146135050 146135072 -13464711 + AT_rich Low_complexity Low_complexity 1 22 0 2 1699 941 241 161 54 chr3 146135212 146135528 -13464255 + MTEa LTR MaLR 30 379 0 2 1699 520 14 29 0 chr3 146135923 146135992 -13463791 + (TC)n Simple_repeat Simple_repeat 2 72 0 2 1699 628 186 26 17 chr3 146136007 146136122 -13463661 - B1_Mus1 SINE Alu -24 124 9 2 1699 347 322 62 56 chr3 146136027 146136188 -13463595 - MT2B LTR ERVL -343 258 97 2 1699 643 237 53 29 chr3 146136426 146136611 -13463172 - B3 SINE B2 -2 196 1 2 1699 21 36 0 0 chr3 146137033 146137061 -13462722 + AT_rich Low_complexity Low_complexity 1 28 0 2 1699 2226 153 142 15 chr3 146137148 146137825 -13461958 + RMER6A LTR ERVK 1 756 0 2 1699 243 88 0 0 chr3 146138784 146138818 -13460965 + (T)n Simple_repeat Simple_repeat 1 34 0 2 1699 1180 62 0 0 chr3 146138818 146138964 -13460819 - B1_Mm SINE Alu 0 147 2 2 1699 467 211 46 15 chr3 146138967 146139097 -13460686 - L1MB3 LINE L1 -49 6134 6001 2 1699 399 227 136 0 chr3 146141542 146141652 -13458131 - RSINE1 SINE B4 -38 127 3 2 1699 2604 127 26 24 chr3 146142128 146142580 -13457203 - RLTR11B LTR ERVK 0 453 1 2 1699 498 301 37 59 chr3 146142916 146143103 -13456680 - MTEa LTR MaLR -196 183 1 2 1699 212 221 87 14 chr3 146143141 146143191 -13456592 + MIR SINE MIR 178 232 -30 2 1699 2631 62 6 0 chr3 146143191 146143513 -13456270 + ORR1A2 LTR MaLR 4 327 0 2 1699 212 221 87 14 chr3 146143513 146143531 -13456252 + MIR SINE MIR 233 251 -11 2 1699 211 277 60 30 chr3 146144319 146144386 -13455397 + AluG_3 SINE Alu 146 214 -97 2 1699 280 273 15 0 chr3 146144352 146144418 -13455365 + PB1 SINE Alu 45 111 -16 2 1699 198 209 0 0 chr3 146144419 146144462 -13455321 + (TA)n Simple_repeat Simple_repeat 1 43 0 2 1699 1174 94 70 22 chr3 146144889 146145074 -13454709 - B2_Mm2 SINE B2 0 195 2 2 1699 324 228 89 0 chr3 146145196 146145275 -13454508 + B3 SINE B2 127 212 -4 2 1700 556 316 42 64 chr3 146146810 146147074 -13452709 - ORR1E LTR MaLR -101 258 1 2 1700 298 313 10 29 chr3 146147093 146147195 -13452588 - ORR1E LTR MaLR -259 100 1 2 1700 1407 74 16 0 chr3 146147353 146147543 -13452240 - B2_Mm2 SINE B2 -2 193 1 2 1700 515 258 48 8 chr3 146148049 146148174 -13451609 + RSINE1 SINE B4 5 134 -31 2 1700 1224 48 0 0 chr3 146148395 146148541 -13451242 - B1_Mm SINE Alu 0 147 2 2 1700 583 272 180 74 chr3 146148665 146148882 -13450901 + RLTR12B LTR ERVK 10 271 -257 2 1700 582 75 0 0 chr3 146148882 146148962 -13450821 + (GA)n Simple_repeat Simple_repeat 1 80 0 2 1700 583 272 180 74 chr3 146148962 146149189 -13450594 + RLTR12B LTR ERVK 272 501 -27 2 1700 217 339 0 0 chr3 146149457 146149519 -13450264 + (TG)n Simple_repeat Simple_repeat 1 62 0 2 1700 589 279 89 24 chr3 146149569 146149738 -13450045 - B3A SINE B2 -17 181 2 2 1700 768 274 44 57 chr3 146149738 146149974 -13449809 - B4 SINE B4 -58 234 2 2 1700 21 71 0 0 chr3 146150547 146150589 -13449194 + AT_rich Low_complexity Low_complexity 1 42 0 2 1700 432 0 0 0 chr3 146150750 146150798 -13448985 + (TG)n Simple_repeat Simple_repeat 2 49 0 2 1700 268 368 58 7 chr3 146150799 146150936 -13448847 - MIR SINE MIR -42 220 77 2 1700 24 32 0 0 chr3 146151450 146151481 -13448302 + AT_rich Low_complexity Low_complexity 1 31 0 2 1700 369 323 48 16 chr3 146152041 146152167 -13447616 - RSINE1 SINE B4 -33 132 3 2 1700 1259 79 0 6 chr3 146153163 146153341 -13446442 + (TTTC)n Simple_repeat Simple_repeat 2 178 0 2 1700 1146 43 7 0 chr3 146153341 146153479 -13446304 - B1_Mus1 SINE Alu -8 140 2 2 1700 1465 63 16 0 chr3 146153844 146154033 -13445750 - B2_Mm2 SINE B2 -2 193 2 2 1700 460 224 112 101 chr3 146154351 146154530 -13445253 + B3A SINE B2 2 182 -16 2 1700 351 0 0 0 chr3 146154563 146154602 -13445181 + (CA)n Simple_repeat Simple_repeat 2 40 0 2 1700 261 284 29 15 chr3 146154602 146154670 -13445113 - MER96B DNA hAT -348 69 1 2 1700 214 156 44 0 chr3 146155127 146155172 -13444611 + CT-rich Low_complexity Low_complexity 2 48 0 2 1700 465 339 16 8 chr3 146155172 146155294 -13444489 - ID_B1 SINE B4 -18 206 84 2 1700 224 306 2 104 chr3 146155505 146155598 -13444185 + B4 SINE B4 54 142 -150 2 1700 545 330 162 36 chr3 146155633 146156190 -13443593 - L2 LINE L2 -883 2536 1910 2 1700 189 293 200 19 chr3 146156323 146156483 -13443300 - L2 LINE L2 -2169 1250 1062 2 1700 494 282 133 7 chr3 146156966 146157116 -13442667 + Tigger5 DNA MER2_type 38 206 -2200 2 1700 24 53 0 0 chr3 146157173 146157211 -13442572 + AT_rich Low_complexity Low_complexity 1 38 0 2 1700 766 271 94 154 chr3 146157762 146158221 -13441562 + RLTR11B LTR ERVK 41 494 -34 2 1700 196 53 26 26 chr3 146158560 146158599 -13441184 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 2 1700 730 173 29 22 chr3 146158611 146158747 -13441036 - B1_Mur4 SINE Alu -13 137 1 2 1700 216 0 0 0 chr3 146159116 146159140 -13440643 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 2 1700 372 147 9 136 chr3 146159142 146159252 -13440531 - ID_B1 SINE B4 0 224 129 2 1700 716 54 0 0 chr3 146159162 146159254 -13440529 - B1_Mus2 SINE Alu -10 137 46 2 1700 297 282 11 66 chr3 146159669 146159760 -13440023 + ID_B1 SINE B4 5 90 -134 2 1700 203 273 297 0 chr3 146159989 146160117 -13439666 + MIR3 SINE MIR 27 192 -16 2 1700 601 139 164 9 chr3 146161544 146161660 -13438123 + B1_Mur1 SINE Alu 10 143 -6 2 1700 332 275 97 59 chr3 146161678 146161864 -13437919 - B3A SINE B2 -9 186 1 2 1700 23 92 0 0 chr3 146162649 146162714 -13437069 + GC_rich Low_complexity Low_complexity 1 65 0 2 1700 25 83 0 0 chr3 146162726 146162786 -13436997 + GC_rich Low_complexity Low_complexity 1 60 0 2 1700 740 141 96 0 chr3 146164516 146164651 -13435132 - B1_Mur4 SINE Alu 0 150 3 2 1700 235 222 22 0 chr3 146165199 146165244 -13434539 - PB1D10 SINE Alu -9 108 63 2 1700 460 256 24 57 chr3 146165293 146165417 -13434366 - RSINE1 SINE B4 -1 164 45 2 1700 231 300 86 0 chr3 146165764 146165834 -13433949 + B3A SINE B2 7 82 -116 2 1700 252 319 80 91 chr3 146165775 146165816 -13433967 - YREP_Mm Unknown Unknown -1478 334 238 2 1700 378 194 29 114 chr3 146165816 146165921 -13433862 + ID_B1 SINE B4 109 204 -20 2 1700 252 319 80 91 chr3 146165921 146165951 -13433832 - YREP_Mm Unknown Unknown -1478 237 161 2 1700 240 208 85 61 chr3 146167583 146167665 -13432118 - L1M3 LINE L1 -373 5816 5733 2 1700 396 277 176 16 chr3 146168701 146168888 -13430895 + B4A SINE B4 6 222 -70 2 1700 28 0 0 0 chr3 146169317 146169345 -13430438 + AT_rich Low_complexity Low_complexity 1 28 0 2 1700 1141 69 14 0 chr3 146170268 146170413 -13429370 - B1_Mur4 SINE Alu -2 148 2 2 1700 522 207 96 7 chr3 146170736 146170872 -13428911 - B1F SINE Alu -1 148 1 2 1700 1202 157 66 9 chr3 146172078 146172290 -13427493 - URR1B DNA MER1_type 0 225 2 2 1700 810 235 185 6 chr3 146172399 146172712 -13427071 + ORR1D1 LTR MaLR 5 373 -1 2 1700 206 118 0 0 chr3 146173722 146173756 -13426027 + (T)n Simple_repeat Simple_repeat 1 34 0 2 1700 396 238 74 63 chr3 146175446 146175621 -13424162 + MER20 DNA MER1_type 37 213 -6 2 1700 476 183 42 34 chr3 146176570 146176689 -13423094 + B1F SINE Alu 30 149 0 2 1700 250 277 129 11 chr3 146176906 146177121 -13422662 + L1M4b LINE L1 1907 2191 -4911 2 1700 1216 41 0 14 chr3 146178309 146178457 -13421326 - B1_Mus2 SINE Alu 0 147 2 2 1700 651 26 0 0 chr3 146178684 146178761 -13421022 + (CA)n Simple_repeat Simple_repeat 1 77 0 2 1700 441 264 9 9 chr3 146181428 146181535 -13418248 - RSINE1 SINE B4 -56 109 3 3 1700 336 300 0 10 chr3 146182529 146182630 -13417153 - PB1D10 SINE Alu -17 100 1 3 1700 1130 56 28 7 chr3 146183148 146183293 -13416490 + B1_Mus1 SINE Alu 1 148 0 3 1700 994 64 31 43 chr3 146183318 146183481 -13416302 + B2_Mm2 SINE B2 33 193 -2 3 1700 380 203 0 56 chr3 146183991 146184116 -13415667 + C-rich Low_complexity Low_complexity 5 122 0 3 1700 945 54 8 3 chr3 146184492 146184633 -13415150 + B1_Mus2 SINE Alu 2 138 -9 3 1700 1279 103 40 0 chr3 146185189 146185363 -13414420 + B2_Mm2 SINE B2 1 181 -14 3 1700 189 0 0 0 chr3 146185363 146185384 -13414399 + (T)n Simple_repeat Simple_repeat 1 21 0 3 1700 1224 41 0 0 chr3 146185384 146185531 -13414252 - B1_Mus2 SINE Alu 0 147 1 3 1700 23 54 0 0 chr3 146185533 146185570 -13414213 + AT_rich Low_complexity Low_complexity 1 37 0 3 1700 698 244 54 19 chr3 146185634 146185839 -13413944 - RMER5 LTR ERV1 -15 519 308 3 1700 192 97 0 0 chr3 146186032 146186063 -13413720 + (CAA)n Simple_repeat Simple_repeat 3 33 0 3 1700 772 264 196 30 chr3 146186512 146186913 -13412870 - Charlie1a DNA MER1_type -37 1418 941 3 1700 720 248 0 0 chr3 146186913 146187058 -13412725 + B1_Mur1 SINE Alu 1 145 -4 3 1700 772 264 196 30 chr3 146187058 146187227 -13412556 - Charlie1a DNA MER1_type -515 940 753 3 1700 354 45 0 0 chr3 146187563 146187607 -13412176 + (CA)n Simple_repeat Simple_repeat 2 45 0 3 1700 519 282 118 14 chr3 146188451 146188595 -13411188 - B4 SINE B4 -131 161 3 3 1700 211 283 100 93 chr3 146188684 146188707 -13411076 - B1_Mus1 SINE Alu -1 147 51 3 1700 391 231 110 9 chr3 146188707 146188816 -13410967 - ID_B1 SINE B4 -10 214 95 3 1700 217 193 105 0 chr3 146189106 146189163 -13410620 + MER5A DNA MER1_type 103 165 -24 3 1700 432 282 33 73 chr3 146189619 146189864 -13409919 + L1MC4a LINE L1 7638 7872 -10 3 1700 660 26 0 0 chr3 146189970 146190048 -13409735 + (TCCCC)n Simple_repeat Simple_repeat 4 81 0 3 1700 3513 178 45 23 chr3 146190052 146190159 -13409624 - Lx LINE L1 -12 6642 6537 3 1700 255 61 0 0 chr3 146190159 146190192 -13409591 + (CCCA)n Simple_repeat Simple_repeat 1 33 0 3 1700 3513 178 45 23 chr3 146190192 146190768 -13409015 - Lx LINE L1 -118 6536 5946 3 1700 190 206 29 0 chr3 146193220 146193288 -13406495 + (TG)n Simple_repeat Simple_repeat 1 70 0 3 1700 447 101 0 0 chr3 146193308 146193387 -13406396 + (CA)n Simple_repeat Simple_repeat 2 80 0 3 1700 292 227 30 0 chr3 146193387 146193453 -13406330 - RSINE1 SINE B4 -19 146 79 3 1700 263 296 12 0 chr3 146193690 146193771 -13406012 + ID4 SINE ID 2 83 0 3 1700 1278 200 165 25 chr3 146194020 146194384 -13405399 + MTD LTR MaLR 5 419 0 3 1700 201 74 0 0 chr3 146194949 146194976 -13404807 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 3 1700 957 120 19 25 chr3 146194977 146195139 -13404644 - B2_Mm2 SINE B2 -34 161 1 3 1700 537 250 25 94 chr3 146195570 146195773 -13404010 - B3A SINE B2 -9 189 1 3 1700 3735 193 120 78 chr3 146196036 146197010 -13402773 + RMER1B Other Other 36 1050 -16 3 1700 1273 104 16 21 chr3 146197010 146197197 -13402586 - B2_Mm2 SINE B2 -9 186 1 3 1700 308 246 226 9 chr3 146198179 146198294 -13401489 - MIR SINE MIR -117 145 6 3 1700 13700 169 29 108 chr3 146199348 146202021 -13397762 - Lx2B LINE L1 -1 6999 4308 3 1700 4518 33 0 0 chr3 146202021 146202541 -13397242 - L1Md_T LINE L1 -1 6581 6062 3 1700 13700 174 28 187 chr3 146202541 146202601 -13397182 - Lx2B LINE L1 -1570 4307 4246 3 1700 1383 49 53 26 chr3 146202601 146202790 -13396993 - B2_Mm2 SINE B2 0 195 2 3 1700 13700 174 28 187 chr3 146202790 146203191 -13396592 - Lx2B LINE L1 -1632 4245 3869 3 1700 386 20 20 0 chr3 146203191 146203242 -13396541 + (TC)n Simple_repeat Simple_repeat 1 52 0 3 1700 360 0 0 0 chr3 146203242 146203281 -13396502 + (CA)n Simple_repeat Simple_repeat 1 40 0 3 1700 13700 174 28 187 chr3 146203281 146203602 -13396181 - Lx2B LINE L1 -2009 3868 3763 3 1700 239 0 32 0 chr3 146203602 146203633 -13396150 + (CA)n Simple_repeat Simple_repeat 1 32 0 3 1700 13700 174 28 187 chr3 146203633 146206510 -13393273 - Lx2B LINE L1 -2115 3762 1493 3 1700 1640 211 65 51 chr3 146206510 146206924 -13392859 - RLTR9B2 LTR ERVK 0 420 1 3 1700 2156 187 50 65 chr3 146206925 146208114 -13391669 - Lx2B LINE L1 -2418 1496 451 3 1700 22 35 0 0 chr3 146208502 146208531 -13391252 + AT_rich Low_complexity Low_complexity 1 29 0 3 1700 556 308 31 0 chr3 146208633 146208792 -13390991 - ID_B1 SINE B4 -16 208 45 3 1700 656 240 0 6 chr3 146208990 146209170 -13390613 + CT-rich Low_complexity Low_complexity 2 180 0 3 1700 466 259 28 0 chr3 146209178 146209286 -13390497 - PB1D7 SINE Alu 0 120 10 3 1700 1129 56 0 7 chr3 146209332 146209466 -13390317 + B1_Mus1 SINE Alu 2 135 -13 3 1700 243 0 0 0 chr3 146209466 146209493 -13390290 + (CAAA)n Simple_repeat Simple_repeat 1 27 0 3 1700 1405 249 23 51 chr3 146209671 146210046 -13389737 + MTD LTR MaLR 1 368 -51 3 1700 1290 129 0 15 chr3 146210046 146210243 -13389540 - B2_Mm2 SINE B2 -1 194 1 3 1700 1405 249 23 51 chr3 146210243 146210298 -13389485 + MTD LTR MaLR 369 419 0 3 1700 2557 167 62 6 chr3 146210355 146210842 -13388941 + RMER20A LTR ERVK 1 514 -2 3 1700 207 0 0 0 chr3 146211221 146211244 -13388539 + (TTA)n Simple_repeat Simple_repeat 2 24 0 3 1700 590 181 28 0 chr3 146211696 146211840 -13387943 + CT-rich Low_complexity Low_complexity 3 150 0 3 1700 180 0 0 0 chr3 146212819 146212839 -13386944 + (CAAAC)n Simple_repeat Simple_repeat 2 21 0 3 1700 408 20 0 0 chr3 146214268 146214317 -13385466 + (TC)n Simple_repeat Simple_repeat 2 50 0 3 1700 259 317 201 5 chr3 146214744 146214928 -13384855 + MIRb SINE MIR 29 248 -20 3 1700 292 306 95 70 chr3 146215561 146215761 -13384022 - MIR SINE MIR -54 208 4 3 1700 601 262 176 18 chr3 146216760 146217090 -13382693 + MER31A LTR ERV1 1 382 -103 3 1700 756 267 24 24 chr3 146217153 146217364 -13382419 + B3 SINE B2 1 211 -5 3 1700 279 267 122 0 chr3 146217378 146217468 -13382315 - RSINE1 SINE B4 -24 141 41 3 1700 258 95 0 0 chr3 146217479 146217521 -13382262 + (T)n Simple_repeat Simple_repeat 1 42 0 3 1700 2499 210 43 38 chr3 146217929 146218100 -13381683 - RLTR17 LTR ERVK -84 608 432 3 1700 3078 66 10 27 chr3 146218100 146218507 -13381276 + MTB LTR MaLR 1 400 0 3 1700 2499 210 43 38 chr3 146218507 146218940 -13380843 - RLTR17 LTR ERVK -261 431 1 3 1700 279 0 0 0 chr3 146218944 146218975 -13380808 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 3 1700 243 232 0 67 chr3 146218975 146219035 -13380748 - B1F SINE Alu -11 138 83 3 1700 341 283 11 0 chr3 146219079 146219171 -13380612 - PB1D10 SINE Alu -8 109 17 3 1700 650 285 76 61 chr3 146219541 146219818 -13379965 - B4A SINE B4 -6 286 6 3 1700 315 71 0 0 chr3 146220383 146220425 -13379358 + (CAAG)n Simple_repeat Simple_repeat 2 43 0 3 1700 249 235 0 29 chr3 146222634 146222704 -13377079 + CT-rich Low_complexity Low_complexity 2 69 0 3 1700 930 153 0 0 chr3 146222798 146223475 -13376308 + (TG)n Simple_repeat Simple_repeat 1 677 0 3 1700 602 220 40 67 chr3 146223976 146224229 -13375554 + RLTR15 LTR ERVK 48 293 -66 3 1700 360 0 0 0 chr3 146224611 146224651 -13375132 + (TC)n Simple_repeat Simple_repeat 1 40 0 3 1700 345 202 76 0 chr3 146224680 146224759 -13375024 - Lx9 LINE L1 -155 7489 7405 3 1700 2339 168 26 78 chr3 146224791 146225319 -13374464 - RLTR16 LTR ERVK 0 505 5 3 1700 576 141 25 0 chr3 146225353 146225474 -13374309 + CT-rich Low_complexity Low_complexity 2 125 0 3 1700 326 212 0 12 chr3 146228718 146228799 -13370984 + HAL1-2a_MD LINE L1 2332 2411 -613 3 1700 381 171 33 27 chr3 146229763 146229913 -13369870 + (CA)n Simple_repeat Simple_repeat 2 152 0 3 1700 469 306 42 48 chr3 146229923 146230064 -13369719 + B3A SINE B2 17 158 -40 3 1700 459 92 0 0 chr3 146230064 146230129 -13369654 + (CA)n Simple_repeat Simple_repeat 1 65 0 3 1700 469 306 42 48 chr3 146230129 146230155 -13369628 + B3A SINE B2 159 183 -15 3 1700 543 286 62 81 chr3 146230364 146230687 -13369096 - Tigger15a DNA TcMar -105 610 294 3 1700 324 302 36 81 chr3 146232070 146232293 -13367490 - L1ME1 LINE L1 -15 6164 5952 3 1700 184 30 0 57 chr3 146232370 146232405 -13367378 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 3 1700 691 259 12 13 chr3 146232436 146232610 -13367173 + B3A SINE B2 1 172 -26 3 1700 360 119 0 0 chr3 146232610 146232669 -13367114 + (CA)n Simple_repeat Simple_repeat 1 59 0 3 1700 433 265 25 104 chr3 146232669 146232696 -13367087 + B2_Mm2 SINE B2 159 186 -9 3 1700 341 125 36 0 chr3 146234039 146234095 -13365688 - MIR SINE MIR -134 128 71 3 1700 997 8 16 0 chr3 146234602 146234724 -13365059 + (TG)n Simple_repeat Simple_repeat 2 125 0 3 1700 420 181 69 0 chr3 146234724 146234796 -13364987 - ID4_ SINE ID -6 77 1 3 1700 315 301 20 40 chr3 146234802 146234951 -13364832 - B1F SINE Alu -3 146 1 3 1700 316 297 50 14 chr3 146235659 146235799 -13363984 + L1M2 LINE L1 2368 2512 -3631 3 1700 635 0 13 0 chr3 146236291 146236366 -13363417 + (TTC)n Simple_repeat Simple_repeat 2 77 0 3 1700 2136 49 8 0 chr3 146236366 146236633 -13363150 - L1Md_F2 LINE L1 -18 6564 6296 3 1700 488 93 0 13 chr3 146237257 146237333 -13362450 + (GA)n Simple_repeat Simple_repeat 2 76 0 3 1700 216 0 0 0 chr3 146237495 146237519 -13362264 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 3 1700 7224 123 9 5 chr3 146237524 146239009 -13360774 + Lx LINE L1 5143 6630 -24 3 1700 287 227 0 15 chr3 146239361 146239428 -13360355 + ID2 SINE ID 9 74 -9 3 1700 328 125 15 15 chr3 146239872 146239937 -13359846 + (CATA)n Simple_repeat Simple_repeat 2 66 0 3 1700 219 36 0 0 chr3 146239937 146239965 -13359818 + (TG)n Simple_repeat Simple_repeat 1 28 0 3 1700 329 318 142 32 chr3 146239991 146240238 -13359545 - B4 SINE B4 -18 274 1 3 1700 195 341 32 32 chr3 146240948 146241042 -13358741 - L3 LINE CR1 -2307 2182 2089 3 1700 1843 196 45 45 chr3 146241322 146241743 -13358040 + MTC LTR MaLR 1 421 0 3 1700 886 278 5 0 chr3 146242298 146242507 -13357276 - B3 SINE B2 -5 211 2 3 1700 456 19 0 0 chr3 146242526 146242579 -13357204 + (TG)n Simple_repeat Simple_repeat 2 54 0 4 1700 254 333 31 10 chr3 146242581 146242678 -13357105 - RSINE1 SINE B4 -52 113 15 4 1700 3744 183 51 1 chr3 146243060 146243744 -13356039 + RMER1B Other Other 23 1065 -1 4 1700 189 0 0 0 chr3 146243764 146243785 -13355998 + (CAG)n Simple_repeat Simple_repeat 2 22 0 4 1700 594 0 0 0 chr3 146243878 146243944 -13355839 + (TTTC)n Simple_repeat Simple_repeat 2 67 0 4 1700 251 333 0 29 chr3 146244430 146244532 -13355251 + MIRb SINE MIR 99 197 -71 4 1700 423 0 0 0 chr3 146245927 146245974 -13353809 + (TG)n Simple_repeat Simple_repeat 1 47 0 4 1700 531 0 0 0 chr3 146247071 146247130 -13352653 + (GA)n Simple_repeat Simple_repeat 1 59 0 4 1700 735 153 0 0 chr3 146247783 146247914 -13351869 + (TA)n Simple_repeat Simple_repeat 1 131 0 4 1700 188 67 33 0 chr3 146247958 146247988 -13351795 + (TATG)n Simple_repeat Simple_repeat 4 34 0 4 1700 275 262 192 100 chr3 146248003 146248253 -13351530 - B4 SINE B4 -15 277 5 4 1700 961 198 252 55 chr3 146248572 146248957 -13350826 + MT2A LTR ERVL 4 464 -69 4 1700 251 179 47 12 chr3 146248973 146249058 -13350725 + (TA)n Simple_repeat Simple_repeat 1 88 0 4 1700 360 0 0 0 chr3 146249063 146249103 -13350680 + (CA)n Simple_repeat Simple_repeat 1 40 0 4 1700 22 0 0 0 chr3 146249342 146249364 -13350419 + AT_rich Low_complexity Low_complexity 1 22 0 4 1700 442 271 0 0 chr3 146251007 146251114 -13348669 - PB1D7 SINE Alu -13 107 1 4 1700 489 84 0 0 chr3 146251682 146251753 -13348030 + (TG)n Simple_repeat Simple_repeat 2 72 0 4 1700 308 164 15 0 chr3 146252285 146252352 -13347431 + (TG)n Simple_repeat Simple_repeat 1 68 0 4 1700 328 290 30 0 chr3 146252387 146252487 -13347296 - B4 SINE B4 -102 190 88 4 1700 578 296 126 16 chr3 146253728 146253982 -13345801 - B4A SINE B4 -10 282 1 4 1700 361 300 117 0 chr3 146254588 146254708 -13345075 - B1F SINE Alu -14 135 2 4 1700 195 232 123 18 chr3 146255029 146255086 -13344697 + MIR SINE MIR 169 231 -31 4 1700 702 0 0 0 chr3 146256230 146256308 -13343475 + (TATATG)n Simple_repeat Simple_repeat 5 82 0 4 1700 221 0 35 0 chr3 146257667 146257696 -13342087 + (TAAAA)n Simple_repeat Simple_repeat 1 30 0 4 1700 185 333 55 18 chr3 146257853 146257963 -13341820 + L2c LINE L2 2818 2931 -488 4 1700 201 226 29 88 chr3 146258107 146258175 -13341608 + L2c LINE L2 3104 3167 -220 4 1700 663 313 23 0 chr3 146258925 146259139 -13340644 - ID_B1 SINE B4 -5 219 1 4 1700 360 0 0 0 chr3 146260613 146260653 -13339130 + (TG)n Simple_repeat Simple_repeat 2 41 0 4 1700 797 279 115 11 chr3 146260662 146260923 -13338860 - B4A SINE B4 -4 288 1 4 1700 216 97 0 0 chr3 146261668 146261699 -13338084 + (T)n Simple_repeat Simple_repeat 1 31 0 4 1700 560 208 80 27 chr3 146262202 146262390 -13337393 - B3A SINE B2 0 198 1 4 1700 606 306 65 5 chr3 146263449 146263649 -13336134 + MER58A DNA MER1_type 2 213 -11 4 1700 510 244 133 44 chr3 146263876 146264056 -13335727 + B3 SINE B2 5 200 -16 4 1700 183 156 0 0 chr3 146264057 146264089 -13335694 + (CA)n Simple_repeat Simple_repeat 1 32 0 4 1700 360 64 0 0 chr3 146264619 146264666 -13335117 + (TTTC)n Simple_repeat Simple_repeat 2 48 0 4 1700 597 206 4 7 chr3 146265578 146265864 -13333919 + (CA)n Simple_repeat Simple_repeat 1 284 0 4 1700 267 270 27 0 chr3 146266115 146266189 -13333594 + GA-rich Low_complexity Low_complexity 1 76 0 4 1700 939 250 5 19 chr3 146266825 146267033 -13332750 - B3 SINE B2 -10 206 2 4 1700 205 207 86 0 chr3 146267968 146268026 -13331757 - MIR SINE MIR -80 182 120 4 1700 1405 213 41 33 chr3 146269349 146269713 -13330070 + ORR1D2 LTR MaLR 1 367 -3 4 1700 252 323 111 0 chr3 146269790 146269889 -13329894 - PB1D10 SINE Alu -7 110 1 4 1700 342 0 0 0 chr3 146270084 146270122 -13329661 + (TG)n Simple_repeat Simple_repeat 1 38 0 4 1700 482 292 83 0 chr3 146270136 146270256 -13329527 - RSINE1 SINE B4 -32 133 4 4 1700 287 320 76 92 chr3 146270470 146270851 -13328932 - L2c LINE L2 0 3387 3016 4 1700 195 268 138 35 chr3 146271313 146271429 -13328354 - MIRb SINE MIR -112 156 29 4 1700 745 224 97 0 chr3 146271552 146271748 -13328035 - ID_B1 SINE B4 -5 219 5 4 1700 672 233 40 0 chr3 146272860 146273010 -13326773 + B3A SINE B2 1 156 -42 4 1700 888 80 15 0 chr3 146273997 146274134 -13325649 - URR1A DNA MER1_type -4 222 84 4 1700 581 215 113 65 chr3 146274185 146274414 -13325369 - MTEa LTR MaLR -97 282 43 4 1700 1070 200 5 10 chr3 146274540 146274747 -13325036 + B3 SINE B2 10 215 -1 4 1700 249 298 43 26 chr3 146274927 146275044 -13324739 + PB1D7 SINE Alu 2 120 0 4 1700 217 0 29 29 chr3 146275592 146275626 -13324157 + (TTTTG)n Simple_repeat Simple_repeat 4 37 0 4 1701 26 50 0 0 chr3 146276380 146276420 -13323363 + AT_rich Low_complexity Low_complexity 1 40 0 4 1701 200 323 0 0 chr3 146276542 146276607 -13323176 + CT-rich Low_complexity Low_complexity 3 67 0 4 1701 246 324 14 0 chr3 146276911 146276985 -13322798 - Charlie5 DNA MER1_type -2549 75 1 4 1701 453 104 0 0 chr3 146277417 146277494 -13322289 + (TG)n Simple_repeat Simple_repeat 1 77 0 4 1701 405 0 0 0 chr3 146277494 146277538 -13322245 + (GA)n Simple_repeat Simple_repeat 1 45 0 4 1701 355 313 147 64 chr3 146277563 146277829 -13321954 + ORR1E LTR MaLR 36 323 -47 4 1701 1820 222 97 10 chr3 146278255 146278742 -13321041 - MT2A LTR ERVL -2 531 3 4 1701 3574 44 7 0 chr3 146278796 146279225 -13320558 - L1Md_F2 LINE L1 0 6582 6151 4 1701 283 308 159 6 chr3 146279536 146279693 -13320090 - MLT1J1 LTR MaLR -236 208 28 4 1701 380 313 133 24 chr3 146280328 146280583 -13319200 + B4A SINE B4 1 283 -9 4 1701 234 156 0 0 chr3 146280634 146280679 -13319104 + A-rich Low_complexity Low_complexity 1 45 0 4 1701 7291 33 0 0 chr3 146281697 146282537 -13317246 - L1Md_T LINE L1 0 6582 5743 4 1701 1167 170 4 39 chr3 146282729 146282962 -13316821 - URR1B DNA MER1_type 0 225 1 4 1701 192 400 0 21 chr3 146284122 146284219 -13315564 - MIR SINE MIR -83 179 85 4 1701 712 255 30 40 chr3 146284654 146284854 -13314929 - B3A SINE B2 0 198 1 4 1701 244 300 13 26 chr3 146285540 146285650 -13314133 + ID4 SINE ID 3 111 -41 4 1701 437 295 71 0 chr3 146286003 146286115 -13313668 - B1F1 SINE Alu -28 121 2 4 1701 1619 222 159 39 chr3 146286303 146286700 -13313083 - RLTR40 LTR ERVK -64 753 300 4 1701 315 0 0 0 chr3 146286700 146286735 -13313048 + (TC)n Simple_repeat Simple_repeat 1 35 0 4 1701 1619 222 159 39 chr3 146286735 146286749 -13313034 - RLTR40 LTR ERVK -518 299 280 4 1701 584 48 0 12 chr3 146286749 146286834 -13312949 + (TCTA)n Simple_repeat Simple_repeat 2 85 0 4 1701 1619 222 159 39 chr3 146286834 146286936 -13312847 - RLTR40 LTR ERVK -538 279 179 4 1701 638 295 133 8 chr3 146287748 146288004 -13311779 - B4 SINE B4 -4 288 1 4 1701 189 372 25 25 chr3 146288020 146288100 -13311683 - MER5A DNA MER1_type 0 189 110 4 1701 519 17 0 0 chr3 146288470 146288530 -13311253 + (TG)n Simple_repeat Simple_repeat 2 61 0 4 1701 222 208 0 0 chr3 146289208 146289261 -13310522 + (TCCA)n Simple_repeat Simple_repeat 1 53 0 4 1701 367 329 167 23 chr3 146289263 146289521 -13310262 - L2c LINE L2 -3 3384 3090 4 1701 190 311 93 9 chr3 146289667 146289774 -13310009 - L2c LINE L2 -508 2911 2796 4 1701 207 288 12 0 chr3 146292119 146292199 -13307584 + (GGGTG)n Simple_repeat Simple_repeat 1 81 0 4 1701 576 0 0 0 chr3 146292291 146292355 -13307428 + (TC)n Simple_repeat Simple_repeat 1 64 0 4 1701 324 0 0 0 chr3 146292355 146292390 -13307393 + (CA)n Simple_repeat Simple_repeat 1 36 0 4 1701 318 280 140 32 chr3 146292435 146292656 -13307127 + Tigger15a DNA TcMar 293 537 -178 4 1701 643 331 0 5 chr3 146292739 146292924 -13306859 + B4A SINE B4 5 188 -104 4 1701 277 342 20 20 chr3 146292927 146293079 -13306704 + RSINE1 SINE B4 3 154 -11 4 1701 234 0 0 0 chr3 146293107 146293133 -13306650 + (TC)n Simple_repeat Simple_repeat 1 26 0 4 1701 543 120 0 36 chr3 146293133 146293271 -13306512 + (CA)n Simple_repeat Simple_repeat 2 134 0 4 1701 555 260 169 45 chr3 146294056 146294346 -13305437 + Lx8 LINE L1 7146 7471 -2 4 1701 205 189 18 36 chr3 146294395 146294450 -13305333 + A-rich Low_complexity Low_complexity 5 58 0 4 1701 927 216 77 0 chr3 146295031 146295225 -13304558 - B3 SINE B2 -5 211 3 4 1701 263 289 13 13 chr3 146295354 146295431 -13304352 - MTEa LTR MaLR -15 364 288 4 1701 1369 125 82 0 chr3 146295744 146295952 -13303831 + URR1A DNA MER1_type 1 225 -1 4 1701 774 283 57 46 chr3 146296415 146296794 -13302989 - RLTR16 LTR ERVK -259 433 1 4 1701 4101 53 4 6 chr3 146297146 146297656 -13302127 + L1Md_F2 LINE L1 6062 6570 -12 4 1701 1900 319 100 40 chr3 146298777 146299804 -13299979 - Lx8 LINE L1 -62 7411 6320 4 1701 2702 125 48 0 chr3 146299804 146300203 -13299580 + MTC LTR MaLR 4 421 0 4 1701 1900 319 100 40 chr3 146300203 146300262 -13299521 - Lx8 LINE L1 -1154 6319 6260 4 1701 510 17 0 0 chr3 146300321 146300380 -13299403 + (TC)n Simple_repeat Simple_repeat 2 60 0 4 1701 277 275 0 24 chr3 146300380 146300462 -13299321 + (TATG)n Simple_repeat Simple_repeat 2 81 0 4 1701 4164 157 41 87 chr3 146300683 146301628 -13298155 + RLTR13D6 LTR ERVK 1 902 0 4 1701 524 294 124 77 chr3 146301739 146302118 -13297665 - MLT1C LTR MaLR 0 467 71 4 1701 188 372 89 7 chr3 146302296 146302442 -13297341 + MIRc SINE MIR 23 180 -88 4 1701 22 56 0 0 chr3 146305553 146305589 -13294194 + AT_rich Low_complexity Low_complexity 1 36 0 4 1701 302 0 26 0 chr3 146305690 146305728 -13294055 + (TC)n Simple_repeat Simple_repeat 2 40 0 4 1701 441 36 0 0 chr3 146305735 146305790 -13293993 + (TATG)n Simple_repeat Simple_repeat 2 56 0 5 1701 786 110 0 0 chr3 146306170 146306316 -13293467 + (GA)n Simple_repeat Simple_repeat 1 146 0 5 1701 292 232 242 53 chr3 146306520 146306652 -13293131 + MLT1J LTR MaLR 199 355 -157 5 1701 484 310 17 77 chr3 146307146 146307380 -13292403 - ID_B1 SINE B4 -2 222 3 5 1701 853 200 28 33 chr3 146307470 146307651 -13292132 + B3 SINE B2 37 216 0 5 1701 40 21 0 0 chr3 146307881 146307928 -13291855 + AT_rich Low_complexity Low_complexity 1 47 0 5 1701 297 0 0 0 chr3 146307941 146307974 -13291809 + (TG)n Simple_repeat Simple_repeat 2 34 0 5 1701 376 159 0 0 chr3 146307977 146308040 -13291743 - RSINE1 SINE B4 -92 73 11 5 1701 31 26 0 0 chr3 146308350 146308388 -13291395 + AT_rich Low_complexity Low_complexity 1 38 0 5 1701 23 33 0 0 chr3 146308450 146308480 -13291303 + AT_rich Low_complexity Low_complexity 1 30 0 5 1701 252 133 50 0 chr3 146308801 146308861 -13290922 + CT-rich Low_complexity Low_complexity 1 63 0 5 1701 216 0 0 0 chr3 146309811 146309835 -13289948 + (A)n Simple_repeat Simple_repeat 1 24 0 5 1701 230 280 51 51 chr3 146312803 146312882 -13286901 + MIR SINE MIR 70 148 -60 5 1701 1035 172 4 97 chr3 146314671 146314909 -13284874 - B3 SINE B2 0 216 1 5 1701 429 230 60 0 chr3 146315475 146315592 -13284191 - MTE2a LTR MaLR -40 339 214 5 1701 187 79 0 50 chr3 146315675 146315715 -13284068 + (AGGGGG)n Simple_repeat Simple_repeat 4 41 0 5 1701 589 312 53 49 chr3 146316773 146317019 -13282764 - MTD LTR MaLR -155 264 18 5 1701 464 266 218 6 chr3 146317037 146317207 -13282576 - MLT2B1 LTR ERVL -313 207 2 5 1701 23 0 0 0 chr3 146317258 146317281 -13282502 + AT_rich Low_complexity Low_complexity 1 23 0 5 1701 247 405 7 73 chr3 146317371 146317507 -13282276 + RSINE1 SINE B4 39 165 0 5 1701 27 87 0 0 chr3 146317509 146317578 -13282205 + AT_rich Low_complexity Low_complexity 1 69 0 5 1701 898 53 0 9 chr3 146317683 146317798 -13281985 - B1_Mm SINE Alu -1 146 33 5 1701 293 301 83 97 chr3 146317726 146317954 -13281829 - RLTR25B LTR ERVK -519 509 285 5 1701 598 281 56 63 chr3 146317957 146318276 -13281507 - L1M3 LINE L1 -358 5822 5506 5 1701 301 264 70 78 chr3 146318646 146318761 -13281022 - MTE2a LTR MaLR -202 157 44 5 1701 770 0 11 0 chr3 146318761 146318851 -13280932 + (TG)n Simple_repeat Simple_repeat 1 91 0 5 1701 459 0 0 0 chr3 146318851 146318901 -13280882 + (GA)n Simple_repeat Simple_repeat 1 51 0 5 1701 3058 52 0 0 chr3 146319301 146319670 -13280113 - L1_Mm LINE L1 -811 5072 4704 5 1701 210 71 0 0 chr3 146320522 146320550 -13279233 + (CTCA)n Simple_repeat Simple_repeat 4 31 0 5 1701 512 289 64 37 chr3 146321625 146321812 -13277971 - MLT1A LTR MaLR -180 194 3 5 1701 414 0 0 0 chr3 146322950 146322996 -13276787 + (TA)n Simple_repeat Simple_repeat 1 46 0 5 1701 1345 239 50 19 chr3 146323174 146323533 -13276250 + ORR1D2 LTR MaLR 1 370 0 5 1701 1227 75 0 0 chr3 146323550 146323792 -13275991 + (CA)n Simple_repeat Simple_repeat 1 242 0 5 1701 661 312 154 27 chr3 146323801 146324352 -13275431 - L1ME2z LINE L1 -372 6072 5452 5 1701 201 340 48 42 chr3 146324789 146324955 -13274828 - MIRb SINE MIR -14 254 88 5 1701 249 116 14 28 chr3 146325412 146325483 -13274300 + T-rich Low_complexity Low_complexity 2 71 0 5 1701 933 106 42 7 chr3 146325485 146325627 -13274156 - B1_Mus2 SINE Alu 0 147 1 5 1701 194 108 0 51 chr3 146327438 146327477 -13272306 + C-rich Low_complexity Low_complexity 1 37 0 5 1701 333 0 0 0 chr3 146327543 146327580 -13272203 + (T)n Simple_repeat Simple_repeat 1 37 0 5 1701 1053 251 193 28 chr3 146327913 146328266 -13271517 - MTC LTR MaLR -8 413 3 5 1701 2156 182 46 22 chr3 146328287 146328400 -13271383 + MTC LTR MaLR 1 129 -292 5 1701 3707 159 66 30 chr3 146328400 146329066 -13270717 + RLTR17 LTR ERVK 3 692 0 5 1701 2156 182 46 22 chr3 146329066 146329363 -13270420 + MTC LTR MaLR 130 421 0 5 1701 3813 46 33 0 chr3 146330048 146330508 -13269275 + MT2C_Mm LTR ERVL 1 475 0 5 1701 330 310 36 42 chr3 146330765 146330914 -13268869 - MIR3 SINE MIR -106 170 12 5 1701 7031 51 7 5 chr3 146331157 146332027 -13267756 + Lx3_Mus LINE L1 6138 7009 0 5 1701 333 0 0 0 chr3 146332081 146332118 -13267665 + (TAAA)n Simple_repeat Simple_repeat 3 39 0 5 1701 261 0 0 0 chr3 146333256 146333285 -13266498 + (CA)n Simple_repeat Simple_repeat 2 30 0 5 1701 414 0 0 0 chr3 146333285 146333330 -13266453 + (GA)n Simple_repeat Simple_repeat 2 47 0 5 1701 716 330 186 49 chr3 146333466 146334513 -13265270 + MTE-int LTR MaLR 1 1191 -389 5 1701 803 319 26 23 chr3 146335304 146335609 -13264174 + MTE-int LTR MaLR 1216 1521 -59 5 1701 581 169 40 0 chr3 146336104 146336228 -13263555 + L5 LINE RTE 2118 2246 -19 5 1701 478 275 124 12 chr3 146336851 146337101 -13262682 + Charlie5 DNA MER1_type 2266 2543 -81 5 1701 321 131 0 0 chr3 146337158 146337219 -13262564 + (TA)n Simple_repeat Simple_repeat 2 62 0 5 1701 23 0 0 0 chr3 146337250 146337273 -13262510 + AT_rich Low_complexity Low_complexity 1 23 0 5 1701 2558 83 0 0 chr3 146337336 146337663 -13262120 + ORR1A2 LTR MaLR 1 327 0 5 1701 432 0 0 0 chr3 146338496 146338544 -13261239 + (TTTC)n Simple_repeat Simple_repeat 2 49 0 5 1701 1237 48 0 0 chr3 146338554 146338701 -13261082 - B1_Mm SINE Alu 0 147 1 5 1701 433 210 32 32 chr3 146339046 146339169 -13260614 - L1MC4 LINE L1 -6 8036 7914 5 1701 400 329 35 0 chr3 146339409 146339552 -13260231 + MER20 DNA MER1_type 5 152 -67 5 1701 560 303 230 15 chr3 146339658 146340315 -13259468 + L1MEc LINE L1 34 831 -5569 5 1701 423 279 149 17 chr3 146340430 146340720 -13259063 + L1MEc LINE L1 4794 5125 -1194 5 1701 676 264 15 31 chr3 146340795 146340990 -13258793 + B3A SINE B2 1 192 -6 5 1701 348 302 172 0 chr3 146341037 146341252 -13258531 + L1MD LINE L1 5017 5268 -878 5 1701 443 319 30 34 chr3 146341541 146341775 -13258008 + L1MEc LINE L1 5758 5990 -362 5 1701 741 223 0 57 chr3 146341782 146341939 -13257844 + B1_Mur1 SINE Alu 1 148 -1 5 1701 200 100 0 24 chr3 146341939 146341980 -13257803 + (CAAAA)n Simple_repeat Simple_repeat 1 40 0 5 1701 336 224 127 27 chr3 146342438 146342548 -13257235 - B1F SINE Alu -7 142 22 5 1701 276 309 56 16 chr3 146342586 146342711 -13257072 - MER3 DNA MER1_type -55 154 25 5 1701 216 0 0 0 chr3 146344311 146344335 -13255448 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 5 1701 234 0 0 0 chr3 146344358 146344384 -13255399 + (CCAA)n Simple_repeat Simple_repeat 2 27 0 5 1701 342 0 0 0 chr3 146344887 146344925 -13254858 + (CA)n Simple_repeat Simple_repeat 1 38 0 5 1701 315 0 0 0 chr3 146345018 146345053 -13254730 + (CA)n Simple_repeat Simple_repeat 2 36 0 5 1701 360 0 0 0 chr3 146345053 146345092 -13254691 + (GA)n Simple_repeat Simple_repeat 2 41 0 5 1701 933 128 0 0 chr3 146346356 146346536 -13253247 + (TC)n Simple_repeat Simple_repeat 1 180 0 5 1701 216 0 0 0 chr3 146347690 146347714 -13252069 + (TG)n Simple_repeat Simple_repeat 2 25 0 5 1701 465 319 65 6 chr3 146349287 146349457 -13250326 + B4 SINE B4 110 289 -3 5 1701 807 201 382 42 chr3 146349565 146349974 -13249809 + Lx7 LINE L1 7147 7694 -2 5 1701 35 0 0 0 chr3 146349974 146350009 -13249774 + AT_rich Low_complexity Low_complexity 1 35 0 5 1701 206 302 97 93 chr3 146350152 146350389 -13249394 + MIR SINE MIR 31 268 0 5 1701 227 297 0 0 chr3 146351231 146351295 -13248488 + MER20B DNA MER1_type 271 334 -449 5 1701 300 333 45 0 chr3 146351450 146351582 -13248201 + MTEa LTR MaLR 5 142 -237 5 1701 463 356 85 16 chr3 146351647 146351964 -13247819 - L2 LINE L2 -411 3008 2670 5 1701 349 320 47 100 chr3 146351978 146352148 -13247635 + B3A SINE B2 24 184 -14 5 1701 951 226 35 10 chr3 146352170 146352371 -13247412 + B3 SINE B2 5 210 -6 5 1701 183 42 0 0 chr3 146352948 146352972 -13246811 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 5 1701 1112 99 0 60 chr3 146352976 146353116 -13246667 - B2_Mm1t SINE B2 -22 171 35 5 1701 369 0 0 0 chr3 146353116 146353157 -13246626 + (TTTG)n Simple_repeat Simple_repeat 2 42 0 5 1701 1039 108 0 0 chr3 146353157 146353296 -13246487 - B1_Mus1 SINE Alu -9 139 1 5 1701 1112 99 0 60 chr3 146353296 146353336 -13246447 - B2_Mm1t SINE B2 -159 34 2 5 1701 445 258 30 22 chr3 146354270 146354405 -13245378 - RSINE1 SINE B4 -29 136 1 5 1701 207 0 0 0 chr3 146354422 146354445 -13245338 + (TTG)n Simple_repeat Simple_repeat 2 24 0 5 1701 328 291 85 51 chr3 146355311 146355546 -13244237 + MLT1C LTR MaLR 63 305 -162 5 1701 1648 195 120 13 chr3 146355672 146356046 -13243737 + MTC LTR MaLR 6 419 -2 5 1701 408 251 50 67 chr3 146357560 146357739 -13242044 + L1MA5 LINE L1 6124 6299 -1 5 1701 1112 210 5 0 chr3 146358111 146358311 -13241472 + B3 SINE B2 1 201 -15 5 1701 218 297 13 51 chr3 146358319 146358397 -13241386 - PB1D10 SINE Alu -32 85 11 5 1701 1186 80 9 6 chr3 146358675 146359025 -13240758 + (TG)n Simple_repeat Simple_repeat 1 351 0 5 1701 197 209 0 15 chr3 146359714 146359782 -13240001 + GA-rich Low_complexity Low_complexity 2 68 0 5 1701 252 161 0 0 chr3 146360100 146360162 -13239621 + T-rich Low_complexity Low_complexity 1 62 0 5 1701 225 0 0 0 chr3 146360863 146360888 -13238895 + (TG)n Simple_repeat Simple_repeat 2 26 0 5 1701 636 213 12 62 chr3 146360893 146361053 -13238730 - Lx9 LINE L1 -167 7477 7326 5 1701 334 250 40 10 chr3 146361083 146361184 -13238599 - Lx8 LINE L1 -397 7076 6973 5 1701 551 270 12 30 chr3 146361193 146361357 -13238426 - RCHARR1 DNA MER1_type -752 222 62 5 1701 270 0 0 0 chr3 146361367 146361397 -13238386 + (TTGG)n Simple_repeat Simple_repeat 2 31 0 5 1701 291 114 0 0 chr3 146362322 146362366 -13237417 + (T)n Simple_repeat Simple_repeat 1 44 0 5 1701 250 297 0 0 chr3 146362664 146362765 -13237018 - Lx7 LINE L1 -17 7679 7579 6 1701 340 168 50 0 chr3 146362805 146362906 -13236877 + GA-rich Low_complexity Low_complexity 3 108 0 6 1701 732 285 48 10 chr3 146362920 146363211 -13236572 - Lx7 LINE L1 -358 7338 7037 6 1701 781 216 29 54 chr3 146363628 146363833 -13235950 - Lx7 LINE L1 -680 7016 6817 6 1701 4498 70 3 2 chr3 146363859 146364442 -13235341 - L1Md_F2 LINE L1 -4 6578 5995 6 1701 4791 47 0 0 chr3 146364442 146365136 -13234647 + L1Md_F2 LINE L1 5300 5993 -589 6 1701 380 314 4 92 chr3 146366185 146366283 -13233500 + L1MC1 LINE L1 5194 5284 -862 6 1701 2163 99 68 44 chr3 146366283 146366693 -13233090 - Lx3C LINE L1 -2 6974 6555 6 1701 461 307 89 11 chr3 146366693 146366885 -13232898 + L1MC1 LINE L1 5270 5475 -858 6 1701 251 130 19 0 chr3 146367079 146367133 -13232650 + (TTTG)n Simple_repeat Simple_repeat 2 56 0 6 1701 1080 295 62 52 chr3 146367163 146367761 -13232022 + L1MC1 LINE L1 5729 6332 -1 6 1701 435 310 138 52 chr3 146368415 146368834 -13230949 + MER67B LTR ERV1 204 658 -3 6 1701 514 286 24 99 chr3 146368883 146369096 -13230687 - B3A SINE B2 -1 197 1 6 1701 205 367 59 43 chr3 146369193 146369449 -13230334 + L2a LINE L2 2937 3196 -230 6 1701 399 306 51 7 chr3 146369628 146369766 -13230017 - B4A SINE B4 -147 145 2 6 1701 290 333 103 5 chr3 146369775 146369959 -13229824 + L2a LINE L2 3217 3418 -8 6 1701 2668 73 0 0 chr3 146370181 146370508 -13229275 - ORR1A2 LTR MaLR 0 327 1 6 1701 846 281 128 52 chr3 146371088 146371549 -13228234 - MLT1D LTR MaLR -9 496 1 6 1701 3095 254 61 9 chr3 146372673 146373597 -13226186 + RCHARR1 DNA MER1_type 1 972 -2 6 1701 243 0 0 0 chr3 146373988 146374015 -13225768 + (CA)n Simple_repeat Simple_repeat 2 28 0 6 1701 798 41 0 0 chr3 146374905 146375003 -13224780 + (TCC)n Simple_repeat Simple_repeat 1 98 0 6 1701 1308 248 139 0 chr3 146375672 146376148 -13223635 - Lx9 LINE L1 -47 7597 7056 6 1701 3322 285 70 81 chr3 146376233 146377182 -13222601 - Lx8 LINE L1 -1 7472 6597 6 1701 252 0 0 0 chr3 146377182 146377210 -13222573 + (TG)n Simple_repeat Simple_repeat 2 29 0 6 1701 3322 285 70 81 chr3 146377210 146377652 -13222131 - Lx8 LINE L1 -877 6596 6097 6 1701 419 305 56 38 chr3 146377826 146377986 -13221797 - RSINE1 SINE B4 0 165 3 6 1701 239 247 12 110 chr3 146378024 146378106 -13221677 - MLT1A0 LTR MaLR -244 121 48 6 1701 233 173 0 19 chr3 146378513 146378566 -13221217 - MTD LTR MaLR -15 404 353 6 1701 270 136 0 0 chr3 146378800 146378844 -13220939 + RMER1C Other Other 1291 1334 -8 6 1701 703 188 0 8 chr3 146378862 146378996 -13220787 - MTD LTR MaLR -54 365 233 6 1701 710 198 18 48 chr3 146378992 146379157 -13220626 - MTC-int LTR MaLR -295 963 804 6 1701 256 295 0 51 chr3 146382168 146382286 -13217497 + GA-rich Low_complexity Low_complexity 3 114 0 6 1701 841 325 11 25 chr3 146383976 146384251 -13215532 + B4 SINE B4 2 272 -20 6 1701 237 346 51 36 chr3 146384908 146385103 -13214680 - MER102b DNA MER1_type -141 200 3 6 1701 388 333 15 0 chr3 146385525 146385657 -13214126 - RSINE1 SINE B4 -21 144 11 6 1701 315 0 0 0 chr3 146386060 146386095 -13213688 + (CA)n Simple_repeat Simple_repeat 2 36 0 6 1701 1330 185 15 11 chr3 146388029 146388302 -13211481 + MT2A LTR ERVL 1 274 -259 6 1701 357 24 0 0 chr3 146388835 146388877 -13210906 + (TTCC)n Simple_repeat Simple_repeat 4 45 0 6 1701 488 313 27 0 chr3 146389281 146389431 -13210352 - ID_B1 SINE B4 -10 214 61 6 1701 1176 21 0 0 chr3 146389885 146390025 -13209758 - B1_Mm SINE Alu 0 147 8 6 1701 530 230 20 0 chr3 146390800 146390900 -13208883 + B3A SINE B2 1 102 -96 6 1701 318 304 80 0 chr3 146391177 146391289 -13208494 + MLT1D LTR MaLR 384 504 -1 6 1701 261 292 169 0 chr3 146391615 146391704 -13208079 - MLT1B LTR MaLR 0 390 287 6 1701 362 153 69 0 chr3 146392672 146392744 -13207039 - MIRc SINE MIR -10 258 182 6 1701 22 35 0 0 chr3 146393525 146393554 -13206229 + AT_rich Low_complexity Low_complexity 1 29 0 6 1701 21 36 0 0 chr3 146395915 146395943 -13203840 + AT_rich Low_complexity Low_complexity 1 28 0 6 1701 465 228 65 22 chr3 146396476 146396506 -13203277 + ID SINE ID 52 87 -137 6 1701 845 50 58 0 chr3 146396506 146396626 -13203157 + B1_Mm SINE Alu 1 127 -20 6 1701 313 216 0 22 chr3 146397435 146397525 -13202258 + CT-rich Low_complexity Low_complexity 2 89 0 6 1701 380 248 47 93 chr3 146397633 146397762 -13202021 + B1F SINE Alu 22 144 -5 6 1701 189 0 0 0 chr3 146398747 146398768 -13201015 + (CAAG)n Simple_repeat Simple_repeat 2 22 0 6 1701 387 269 46 0 chr3 146402663 146402771 -13197012 - PB1 SINE Alu -12 115 3 6 1701 375 227 0 0 chr3 146404100 146404166 -13195617 + ID SINE ID 1 66 -158 6 1701 356 304 94 39 chr3 146404266 146404499 -13195284 + MER68 LTR ERVL 161 406 -157 6 1701 254 333 33 0 chr3 146404512 146404602 -13195181 + MER68 LTR ERVL 463 555 -8 6 1701 24 0 0 0 chr3 146405290 146405314 -13194469 + AT_rich Low_complexity Low_complexity 1 24 0 6 1701 402 305 95 11 chr3 146406422 146406611 -13193172 - B3 SINE B2 -10 206 2 6 1701 262 358 42 42 chr3 146407087 146407230 -13192553 - Tigger12c DNA MER2_type -582 152 10 6 1702 671 72 0 0 chr3 146409413 146409510 -13190273 - L1Md_F2 LINE L1 -12 6570 6474 6 1702 216 111 0 0 chr3 146410763 146410799 -13188984 + (CCAA)n Simple_repeat Simple_repeat 2 37 0 6 1702 28 0 0 0 chr3 146413186 146413214 -13186569 + AT_rich Low_complexity Low_complexity 1 28 0 6 1702 353 330 10 39 chr3 146414715 146414819 -13184964 + PB1D10 SINE Alu 3 103 -14 6 1702 198 0 0 0 chr3 146414820 146414842 -13184941 + (CAAAA)n Simple_repeat Simple_repeat 1 22 0 6 1702 225 293 60 12 chr3 146416054 146416137 -13183646 + MIRb SINE MIR 19 105 -163 6 1702 213 39 0 0 chr3 146416293 146416319 -13183464 + (TG)n Simple_repeat Simple_repeat 1 26 0 6 1702 272 25 50 0 chr3 146417077 146417117 -13182666 + (CAGA)n Simple_repeat Simple_repeat 2 43 0 6 1702 264 59 0 0 chr3 146417135 146417169 -13182614 + (GA)n Simple_repeat Simple_repeat 2 35 0 6 1702 252 208 247 0 chr3 146417680 146417757 -13182026 + MER33 DNA MER1_type 30 125 -199 6 1702 1282 41 0 0 chr3 146419062 146419208 -13180575 + B1_Mm SINE Alu 2 147 0 6 1702 21 0 0 0 chr3 146419220 146419241 -13180542 + AT_rich Low_complexity Low_complexity 1 21 0 6 1702 268 274 32 3 chr3 146420365 146420445 -13179338 + ID4 SINE ID 11 91 -61 6 1702 507 250 41 35 chr3 146421760 146421905 -13177878 + B1F SINE Alu 2 147 -2 6 1702 243 0 0 0 chr3 146424071 146424098 -13175685 + (TC)n Simple_repeat Simple_repeat 2 28 0 6 1702 1164 89 0 0 chr3 146424109 146424255 -13175528 - B1_Mus2 SINE Alu 0 147 2 6 1702 22 80 0 0 chr3 146425086 146425136 -13174647 + AT_rich Low_complexity Low_complexity 1 50 0 6 1702 998 133 101 0 chr3 146425514 146425702 -13174081 + Lx2B LINE L1 6794 7000 0 6 1702 2011 80 59 62 chr3 146426137 146426457 -13173326 + ORR1A2 LTR MaLR 1 319 -8 6 1702 32 26 0 0 chr3 146426633 146426672 -13173111 + AT_rich Low_complexity Low_complexity 1 39 0 6 1702 34 24 0 0 chr3 146426719 146426760 -13173023 + AT_rich Low_complexity Low_complexity 1 41 0 6 1702 198 163 70 0 chr3 146426795 146426838 -13172945 + L3 LINE CR1 935 980 -3509 6 1702 339 360 90 78 chr3 146426955 146427389 -13172394 - L1MEd LINE L1 -5445 674 236 6 1702 198 0 0 0 chr3 146427688 146427710 -13172073 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 6 1702 244 230 6 17 chr3 146427849 146427920 -13171863 - PB1D7 SINE Alu 0 149 67 6 1702 469 278 132 77 chr3 146427977 146428250 -13171533 - B4A SINE B4 -1 291 4 6 1702 433 282 96 70 chr3 146428483 146428670 -13171113 - B3A SINE B2 -6 192 1 6 1702 795 177 152 17 chr3 146429068 146429246 -13170537 + B3 SINE B2 1 202 -14 6 1702 389 322 87 4 chr3 146429761 146429992 -13169791 - L1MA6 LINE L1 -26 6274 6025 6 1702 23 0 0 0 chr3 146432847 146432870 -13166913 + AT_rich Low_complexity Low_complexity 1 23 0 6 1702 270 0 0 0 chr3 146434314 146434344 -13165439 + (A)n Simple_repeat Simple_repeat 1 30 0 6 1702 586 274 21 59 chr3 146435122 146435526 -13164257 + L1MB5 LINE L1 1372 1779 -4699 6 1702 281 270 98 36 chr3 146436549 146436789 -13162994 + L1MB5 LINE L1 2771 3029 -3353 6 1702 576 259 28 28 chr3 146436805 146436948 -13162835 + RSINE1 SINE B4 3 145 -20 6 1702 299 25 25 0 chr3 146436948 146436988 -13162795 + (CA)n Simple_repeat Simple_repeat 1 41 0 6 1702 367 308 265 13 chr3 146437399 146437777 -13162006 + L1MB5 LINE L1 4026 4498 -1884 6 1702 972 320 127 24 chr3 146437934 146438890 -13160893 + L1MB5 LINE L1 4778 5816 -594 6 1702 1303 98 48 16 chr3 146438890 146439076 -13160707 - B2_Mm2 SINE B2 0 195 4 6 1702 419 300 140 33 chr3 146439076 146439465 -13160318 + L1MB5 LINE L1 5817 6241 -1990 6 1702 808 259 54 0 chr3 146440452 146440657 -13159126 - B3 SINE B2 0 216 1 6 1702 301 255 103 31 chr3 146441440 146441537 -13158246 + B1F SINE Alu 18 121 -28 6 1702 689 263 0 8 chr3 146441786 146441920 -13157863 + RSINE1 SINE B4 3 135 -30 6 1702 283 315 49 11 chr3 146442736 146442844 -13156939 + B1F1 SINE Alu 1 109 -8 6 1702 291 281 0 0 chr3 146442844 146442940 -13156843 + (CA)n Simple_repeat Simple_repeat 1 96 0 6 1702 342 261 0 0 chr3 146442947 146443058 -13156725 + (CATA)n Simple_repeat Simple_repeat 4 114 0 6 1702 319 175 15 31 chr3 146443062 146443127 -13156656 + HAL1-3A_ME LINE L1 1975 2038 -820 6 1702 1763 31 0 0 chr3 146446103 146446295 -13153488 + B2_Mm1a SINE B2 2 193 0 6 1702 21 0 0 0 chr3 146446716 146446737 -13153046 + AT_rich Low_complexity Low_complexity 1 21 0 6 1702 528 59 0 0 chr3 146446921 146446989 -13152794 + (CA)n Simple_repeat Simple_repeat 2 69 0 6 1702 383 288 9 9 chr3 146447235 146447340 -13152443 - PB1D10 SINE Alu -8 109 5 6 1702 468 0 0 0 chr3 146448094 146448146 -13151637 + (TG)n Simple_repeat Simple_repeat 1 52 0 6 1702 1903 112 63 3 chr3 146448146 146448432 -13151351 - ORR1A2 LTR MaLR -13 313 11 6 1702 11460 114 68 66 chr3 146448442 146450400 -13149383 - ORR1A2-int LTR MaLR 0 1963 1 6 1702 2486 61 42 0 chr3 146450400 146450713 -13149070 - ORR1A2 LTR MaLR 0 327 2 6 1702 4008 99 26 9 chr3 146450895 146451478 -13148305 + ORR1A3-int LTR MaLR 1234 1826 -137 6 1702 265 208 27 40 chr3 146451487 146451562 -13148221 + Ricksha_c DNA MuDR 830 903 -1145 6 1702 283 238 0 24 chr3 146452035 146452117 -13147666 - L1M2 LINE L1 -1487 4656 4577 6 1702 231 308 15 0 chr3 146452120 146452185 -13147598 - MTEa LTR MaLR -291 88 23 7 1702 234 211 111 14 chr3 146452311 146452383 -13147400 - L1MEf LINE L1 -4087 2113 2035 7 1702 472 302 116 4 chr3 146452734 146452967 -13146816 - L1MC3 LINE L1 -133 7652 7394 7 1702 828 244 200 22 chr3 146453050 146453460 -13146323 - L1MC3 LINE L1 -588 7197 6715 7 1702 6741 140 37 10 chr3 146453464 146453757 -13146026 + Lx2B LINE L1 4737 5029 -857 7 1702 243 0 0 0 chr3 146453757 146453784 -13145999 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 7 1702 6741 116 30 5 chr3 146453784 146454755 -13145028 + Lx2B LINE L1 5030 6028 -972 7 1702 1058 45 0 0 chr3 146456001 146456133 -13143650 + B1_Mus2 SINE Alu 6 137 -10 7 1702 326 23 23 0 chr3 146456133 146456176 -13143607 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 7 1702 227 89 67 0 chr3 146456426 146456471 -13143312 + A-rich Low_complexity Low_complexity 2 49 0 7 1702 228 303 192 27 chr3 146457103 146457364 -13142419 + Arthur1 DNA Tip100 2878 3181 -766 7 1702 2631 48 0 3 chr3 146457431 146457742 -13142041 - L1Md_A LINE L1 0 6582 6273 7 1702 1160 70 14 0 chr3 146458003 146458145 -13141638 + B1_Mur4 SINE Alu 2 145 -5 7 1702 320 286 149 58 chr3 146458218 146458526 -13141257 - Kanga1 DNA Tc2 -100 1645 1310 7 1702 641 286 107 6 chr3 146458975 146459144 -13140639 + Tigger5 DNA MER2_type 6 191 -2215 7 1702 2535 171 148 99 chr3 146459439 146460022 -13139761 + RMER19C LTR ERVK 1 611 0 7 1702 267 358 10 10 chr3 146460691 146460787 -13138996 - PB1D10 SINE Alu -2 115 20 7 1702 1052 88 7 7 chr3 146461164 146461302 -13138481 + B1_Mus2 SINE Alu 1 138 -9 7 1702 6402 133 16 0 chr3 146462329 146463275 -13136508 - Lx2 LINE L1 0 6997 6037 7 1702 31 0 0 0 chr3 146463335 146463366 -13136417 + AT_rich Low_complexity Low_complexity 1 31 0 7 1702 1034 274 72 35 chr3 146463570 146463974 -13135809 - MTD LTR MaLR 0 419 1 7 1702 406 168 0 42 chr3 146464054 146464172 -13135611 + (TA)n Simple_repeat Simple_repeat 1 113 0 7 1702 242 255 46 197 chr3 146464266 146464505 -13135278 + MTEa LTR MaLR 175 377 -2 7 1702 295 300 182 56 chr3 146464645 146464931 -13134852 - L2 LINE L2 -1904 1515 1194 7 1702 624 262 137 6 chr3 146465443 146465604 -13134179 + B3A SINE B2 1 182 -16 7 1702 1036 211 37 0 chr3 146465776 146465966 -13133817 - B3 SINE B2 -19 197 1 7 1702 662 220 41 12 chr3 146467833 146468003 -13131780 + URR1A DNA MER1_type 46 220 -6 7 1702 195 328 0 118 chr3 146469105 146469181 -13130602 + L2c LINE L2 3296 3362 -25 7 1702 299 266 25 12 chr3 146470429 146470449 -13129334 - ID_B1 SINE B4 -54 170 90 7 1702 341 183 0 0 chr3 146470449 146470509 -13129274 - PB1D10 SINE Alu -49 68 9 7 1702 270 0 0 0 chr3 146470532 146470562 -13129221 + (TGAG)n Simple_repeat Simple_repeat 1 30 0 7 1702 380 305 161 69 chr3 146470604 146470822 -13128961 - B4 SINE B4 -52 240 3 7 1702 286 336 109 7 chr3 146472200 146472368 -13127415 + MIR SINE MIR 25 214 -54 7 1702 649 221 44 0 chr3 146472479 146472615 -13127168 - B1_Mur1 SINE Alu -5 144 3 7 1702 267 141 11 45 chr3 146473186 146473275 -13126508 + A-rich Low_complexity Low_complexity 3 88 0 7 1702 330 87 0 0 chr3 146475843 146475889 -13123894 + (CGG)n Simple_repeat Simple_repeat 2 47 0 7 1702 225 0 0 0 chr3 146476718 146476743 -13123040 + (T)n Simple_repeat Simple_repeat 1 25 0 7 1702 276 306 65 24 chr3 146477026 146477150 -13122633 - MIR SINE MIR -45 217 89 7 1702 257 339 92 27 chr3 146477170 146477355 -13122428 + MER34 LTR ERV1 1 197 -345 7 1702 2372 121 107 0 chr3 146477635 146477991 -13121792 + ORR1B1 LTR MaLR 1 394 0 7 1702 1623 142 18 60 chr3 146478039 146478324 -13121459 + Lx4B LINE L1 6779 7051 -7 7 1702 644 202 40 0 chr3 146478521 146478645 -13121138 + B1_Mus2 SINE Alu 14 142 -5 7 1702 388 351 80 51 chr3 146479036 146479312 -13120471 + B4A SINE B4 1 284 -8 7 1702 1109 65 57 14 chr3 146480175 146480316 -13119467 - B1_Mus2 SINE Alu 0 147 1 7 1702 184 279 67 34 chr3 146480394 146480483 -13119300 - MIRc SINE MIR -105 163 72 7 1702 183 274 30 75 chr3 146481080 146481147 -13118636 - MIR SINE MIR -110 152 89 7 1702 189 121 0 0 chr3 146481234 146481267 -13118516 + (CAAAAA)n Simple_repeat Simple_repeat 2 34 0 7 1702 851 179 6 0 chr3 146481843 146482022 -13117761 + GA-rich Low_complexity Low_complexity 1 180 0 7 1702 580 302 133 32 chr3 146482684 146483029 -13116754 + MLT1D LTR MaLR 126 505 0 7 1702 494 13 40 13 chr3 146483329 146483405 -13116378 + (TA)n Simple_repeat Simple_repeat 1 78 0 7 1702 1176 73 0 0 chr3 146483405 146483556 -13116227 - B2_Mm2 SINE B2 -43 152 2 7 1702 631 271 0 41 chr3 146484247 146484292 -13115491 + B1_Mur2 SINE Alu 1 42 -107 7 1702 3198 32 0 0 chr3 146484292 146484638 -13115145 - ORR1A0 LTR MaLR 0 346 1 7 1702 631 271 0 41 chr3 146484638 146484738 -13115045 + B1_Mur2 SINE Alu 43 140 -9 7 1702 420 156 0 0 chr3 146484976 146485085 -13114698 + (TCTG)n Simple_repeat Simple_repeat 4 112 0 7 1702 472 294 121 58 chr3 146486312 146487060 -13112723 - L1ME1 LINE L1 -78 6101 5315 7 1702 1247 48 0 20 chr3 146487079 146487227 -13112556 + B1_Mm SINE Alu 2 146 -1 7 1702 413 256 171 24 chr3 146487308 146487600 -13112183 - L1MA6 LINE L1 -118 6182 5848 7 1702 1127 292 39 22 chr3 146487602 146487963 -13111820 - MTE2a LTR MaLR -10 369 3 7 1702 1429 247 129 11 chr3 146487963 146488528 -13111255 - L1MA6 LINE L1 -449 5851 5218 7 1702 987 181 6 28 chr3 146488533 146488715 -13111068 - RMER12 LTR ERVK 0 1322 1145 7 1702 779 231 125 57 chr3 146488930 146489178 -13110605 - RMER12 LTR ERVK -123 1199 935 7 1702 3996 153 40 17 chr3 146489200 146489953 -13109830 - RMER12 LTR ERVK -552 770 1 7 1702 1130 261 27 13 chr3 146489982 146490358 -13109425 - L1MA6 LINE L1 -900 5243 4863 7 1702 465 122 0 0 chr3 146490423 146490497 -13109286 + (TATATG)n Simple_repeat Simple_repeat 1 74 0 7 1702 808 266 117 0 chr3 146490517 146490773 -13109010 + B4A SINE B4 1 286 -6 7 1702 241 213 32 16 chr3 146490784 146490846 -13108937 + (CA)n Simple_repeat Simple_repeat 2 64 0 7 1702 738 278 143 21 chr3 146490901 146491368 -13108415 + L1M5 LINE L1 4317 4840 -1306 7 1702 365 329 104 45 chr3 146491527 146491542 -13108241 - L1M5 LINE L1 -3304 2842 2827 7 1702 574 229 104 39 chr3 146491542 146491724 -13108059 - B3A SINE B2 0 198 5 7 1702 365 329 104 45 chr3 146491724 146492045 -13107738 - L1M5 LINE L1 -3320 2826 2487 7 1702 239 259 131 36 chr3 146492617 146492701 -13107082 + MLT1A1 LTR MaLR 243 334 -74 7 1702 198 0 0 0 chr3 146493635 146493657 -13106126 + (TG)n Simple_repeat Simple_repeat 1 22 0 7 1702 2667 164 15 0 chr3 146493705 146494114 -13105669 + MTC LTR MaLR 5 419 -2 7 1702 389 20 0 20 chr3 146494189 146494240 -13105543 + (TG)n Simple_repeat Simple_repeat 2 51 0 7 1702 445 268 134 38 chr3 146494305 146494491 -13105292 - B4A SINE B4 -88 204 1 7 1702 3351 246 49 18 chr3 146495305 146496247 -13103536 - RCHARR1 DNA MER1_type -1 973 3 7 1702 510 298 75 10 chr3 146496319 146496519 -13103264 + B3 SINE B2 4 216 0 7 1702 908 234 82 68 chr3 146496807 146497100 -13102683 - MTEb LTR MaLR 0 379 83 7 1702 1371 196 133 19 chr3 146497032 146497355 -13102428 + ORR1D1 LTR MaLR 14 373 -1 7 1702 498 292 30 8 chr3 146497355 146497484 -13102299 - MTE2b LTR MaLR -247 132 1 7 1702 439 138 0 22 chr3 146498023 146498112 -13101671 + (TA)n Simple_repeat Simple_repeat 2 88 0 7 1702 795 299 35 3 chr3 146498441 146498726 -13101057 - ERVL-int LTR ERVL -2967 2790 2497 7 1702 3668 149 160 75 chr3 146498860 146499678 -13100105 + RMER19B LTR ERVK 3 890 -12 7 1702 260 200 0 0 chr3 146499949 146499999 -13099784 + B4A SINE B4 1 50 -242 7 1702 403 371 23 14 chr3 146500005 146500221 -13099562 + B4A SINE B4 57 274 -18 1 1702 282 29 0 0 chr3 146500226 146500261 -13099522 + (CA)n Simple_repeat Simple_repeat 2 36 0 2 1702 240 111 0 0 chr3 146500266 146500302 -13099481 + (TA)n Simple_repeat Simple_repeat 2 37 0 3 1702 217 333 43 0 chr3 146500661 146500754 -13099029 + MIRb SINE MIR 91 187 -81 4 1702 1895 192 51 8 chr3 146500970 146501363 -13098420 + MTC LTR MaLR 1 410 -11 5 1702 543 306 88 40 chr3 146501472 146501700 -13098083 - B4A SINE B4 0 292 54 6 1702 389 326 39 78 chr3 146502415 146502481 -13097302 - B4A SINE B4 -5 287 228 7 1702 1071 109 0 0 chr3 146502481 146502628 -13097155 - B1_Mus2 SINE Alu 0 147 1 8 1702 389 326 39 78 chr3 146502628 146502767 -13097016 - B4A SINE B4 -65 227 90 7 1702 1652 227 48 83 chr3 146502822 146503361 -13096422 - RLTR20C LTR ERVK -14 520 1 9 1702 378 0 0 0 chr3 146503840 146503882 -13095901 + (CA)n Simple_repeat Simple_repeat 2 43 0 1 1702 666 231 21 0 chr3 146504837 146504980 -13094803 - B1_Mur2 SINE Alu -1 148 3 1 1702 1196 321 50 65 chr3 146506222 146506280 -13093503 + Lx8 LINE L1 6796 6853 -620 1 1702 297 0 0 0 chr3 146506280 146506313 -13093470 + (TTTA)n Simple_repeat Simple_repeat 4 36 0 1 1702 1196 321 50 65 chr3 146506313 146506933 -13092850 + Lx8 LINE L1 6854 7463 -10 1 1702 833 332 40 0 chr3 146507502 146507776 -13092007 - B4 SINE B4 0 292 8 1 1702 24 32 0 0 chr3 146508511 146508542 -13091241 + AT_rich Low_complexity Low_complexity 1 31 0 1 1702 262 367 85 20 chr3 146508876 146509029 -13090754 + MamGypLTR1c LTR Gypsy 583 745 -58 1 1702 190 51 0 71 chr3 146509559 146509601 -13090182 + (TTTTTG)n Simple_repeat Simple_repeat 3 41 0 1 1702 1512 227 35 20 chr3 146509605 146509951 -13089832 + MTD LTR MaLR 18 368 -51 1 1702 989 107 21 0 chr3 146510539 146510679 -13089104 - B1_Mus1 SINE Alu -5 143 1 1 1702 24 0 0 0 chr3 146510757 146510781 -13089002 + AT_rich Low_complexity Low_complexity 1 24 0 2 1702 21 36 0 0 chr3 146510857 146510885 -13088898 + AT_rich Low_complexity Low_complexity 1 28 0 2 1702 558 252 24 7 chr3 146511894 146512047 -13087736 + RSINE1 SINE B4 2 157 -8 2 1702 289 265 30 20 chr3 146512185 146512285 -13087498 + GA-rich Low_complexity Low_complexity 5 105 0 2 1702 432 0 0 0 chr3 146516097 146516145 -13083638 + (TG)n Simple_repeat Simple_repeat 2 49 0 2 1702 263 292 151 0 chr3 146516178 146516284 -13083499 - MIRb SINE MIR -133 135 14 2 1702 934 56 0 0 chr3 146518464 146518589 -13081194 - B1_Mus1 SINE Alu 0 148 24 2 1702 511 223 34 54 chr3 146518589 146518607 -13081176 - ID_B1 SINE B4 0 220 81 2 1702 315 0 0 0 chr3 146518623 146518658 -13081125 + (TTTA)n Simple_repeat Simple_repeat 3 37 0 2 1702 1121 70 6 0 chr3 146518658 146518814 -13080969 - B2_Mm1a SINE B2 -33 160 4 2 1702 21 0 0 0 chr3 146521798 146521819 -13077964 + AT_rich Low_complexity Low_complexity 1 21 0 3 1702 526 285 17 46 chr3 146522180 146522353 -13077430 + B3A SINE B2 1 168 -30 3 1702 321 93 0 0 chr3 146522361 146522415 -13077368 + (CAGA)n Simple_repeat Simple_repeat 1 54 0 3 1702 405 0 0 0 chr3 146522594 146522639 -13077144 + (TAA)n Simple_repeat Simple_repeat 3 47 0 3 1702 416 292 16 8 chr3 146522639 146522760 -13077023 + Tigger7 DNA MER2_type 1 122 -2369 3 1702 366 342 31 25 chr3 146522750 146522909 -13076874 + Tigger7 DNA MER2_type 313 472 -2019 3 1702 535 264 89 9 chr3 146522986 146523200 -13076583 + Tigger7 DNA MER2_type 2235 2465 -26 3 1702 1091 267 99 99 chr3 146523228 146523979 -13075804 - L1MB2 LINE L1 -193 5978 5209 3 1702 939 282 121 28 chr3 146524236 146524742 -13075041 - L1MD LINE L1 -1575 4571 4019 3 1702 435 220 0 0 chr3 146524748 146524916 -13074867 + (TG)n Simple_repeat Simple_repeat 1 168 0 3 1702 371 303 105 50 chr3 146524951 146525170 -13074613 + MER2 DNA MER2_type 49 279 -66 3 1702 505 261 38 23 chr3 146525294 146525427 -13074356 + ID_B1 SINE B4 90 224 0 3 1702 428 253 76 86 chr3 146525439 146525754 -13074029 - L1MC LINE L1 -2242 3904 3593 4 1702 431 286 73 17 chr3 146526234 146526255 -13073528 - B3A SINE B2 -5 193 173 4 1702 444 123 0 0 chr3 146526255 146526328 -13073455 + (TG)n Simple_repeat Simple_repeat 2 74 0 4 1702 431 286 73 17 chr3 146526328 146526484 -13073299 - B3A SINE B2 -26 172 7 4 1702 332 261 98 32 chr3 146526915 146527038 -13072745 - L1MB1 LINE L1 -243 5925 5795 4 1702 1551 27 38 0 chr3 146527341 146527525 -13072258 + B2_Mm1t SINE B2 2 192 -1 4 1702 1051 30 29 22 chr3 146527582 146527719 -13072064 - B1_Mus2 SINE Alu -9 138 1 4 1702 454 335 139 16 chr3 146527935 146528379 -13071404 - L1MA5A LINE L1 -406 5894 5404 4 1702 330 91 0 0 chr3 146528926 146528981 -13070802 + (TG)n Simple_repeat Simple_repeat 2 56 0 4 1702 1067 58 29 0 chr3 146528981 146529118 -13070665 - B1_Mus1 SINE Alu -7 141 1 4 1702 343 308 29 36 chr3 146530164 146530302 -13069481 + B1F SINE Alu 3 139 -10 4 1702 246 62 0 0 chr3 146530359 146530391 -13069392 + (TTA)n Simple_repeat Simple_repeat 1 32 0 5 1702 807 163 13 33 chr3 146530396 146530548 -13069235 - B1_Mur4 SINE Alu 0 150 2 5 1702 798 41 0 0 chr3 146530553 146530651 -13069132 + (TTCTC)n Simple_repeat Simple_repeat 1 98 0 5 1702 341 91 63 25 chr3 146530651 146530730 -13069053 + C-rich Low_complexity Low_complexity 3 84 0 5 1702 551 251 85 27 chr3 146530835 146531023 -13068760 + ID_B1 SINE B4 2 200 -24 5 1702 339 85 0 0 chr3 146531341 146531388 -13068395 + (TATG)n Simple_repeat Simple_repeat 2 48 0 5 1702 2401 276 144 40 chr3 146531445 146532504 -13067279 - Lx9 LINE L1 -32 7612 6443 5 1702 325 306 39 39 chr3 146532653 146532782 -13067001 + MER5B DNA MER1_type 1 129 -49 5 1702 189 74 0 0 chr3 146532782 146532809 -13066974 + (TTTG)n Simple_repeat Simple_repeat 3 29 0 5 1702 373 354 40 35 chr3 146533721 146533923 -13065860 - MLT2F LTR ERVL -211 452 250 5 1702 4419 60 13 0 chr3 146534049 146534601 -13065182 - L1_Mus1 LINE L1 -16 6551 5993 6 1702 2204 92 27 42 chr3 146534748 146535078 -13064705 - ORR1A2 LTR MaLR 0 327 3 6 1702 4842 77 3 5 chr3 146535855 146536495 -13063288 - L1Md_F2 LINE L1 -2 6580 5942 6 1702 3912 41 8 0 chr3 146536495 146537020 -13062763 + L1Md_F2 LINE L1 5417 5945 -637 6 1702 418 168 29 10 chr3 146537141 146537243 -13062540 - L1Md_F2 LINE L1 0 6582 6479 6 1702 773 95 9 0 chr3 146537344 146537460 -13062323 + (TTCC)n Simple_repeat Simple_repeat 1 117 0 6 1702 302 276 111 31 chr3 146537621 146537907 -13061876 + L1MC LINE L1 5238 5554 -2231 6 1703 300 204 9 37 chr3 146538546 146538653 -13061130 + CT-rich Low_complexity Low_complexity 2 105 0 6 1703 29 0 0 0 chr3 146539563 146539592 -13060191 + AT_rich Low_complexity Low_complexity 1 29 0 6 1703 333 0 0 0 chr3 146539612 146539649 -13060134 + (TG)n Simple_repeat Simple_repeat 2 38 0 6 1703 590 178 0 0 chr3 146539677 146539784 -13059999 - B3 SINE B2 -108 108 2 6 1703 1033 234 9 0 chr3 146540454 146540668 -13059115 + B3 SINE B2 1 216 0 7 1703 351 230 52 17 chr3 146540910 146541025 -13058758 + PB1D7 SINE Alu 2 120 0 7 1703 1107 264 73 6 chr3 146541310 146541665 -13058118 + MTEa LTR MaLR 1 379 0 7 1703 396 0 0 0 chr3 146542445 146542489 -13057294 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 7 1703 1104 73 0 0 chr3 146542490 146542626 -13057157 - B1_Mus2 SINE Alu -11 136 1 7 1703 231 256 108 12 chr3 146543254 146543337 -13056446 - Kanga1b DNA Tc2 -208 571 481 7 1703 4013 47 7 67 chr3 146543395 146543946 -13055837 - MURVY-LTR LTR ERV1 -1 518 1 7 1703 306 183 41 34 chr3 146544045 146544119 -13055664 + B1F SINE Alu 27 96 -21 7 1703 244 213 32 16 chr3 146544125 146544187 -13055596 + GA-rich Low_complexity Low_complexity 3 65 0 7 1703 363 23 0 0 chr3 146544234 146544278 -13055505 + (TG)n Simple_repeat Simple_repeat 2 45 0 7 1703 272 341 152 30 chr3 146544416 146544718 -13055065 - MLT2D LTR ERVL -63 351 13 8 1703 503 280 19 77 chr3 146545366 146545575 -13054208 + B3A SINE B2 2 198 0 8 1703 2234 180 24 7 chr3 146546053 146546121 -13053662 - MTC LTR MaLR 0 421 355 8 1703 213 39 0 0 chr3 146546121 146546147 -13053636 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 8 1703 2234 180 24 7 chr3 146546147 146546492 -13053291 - MTC LTR MaLR -67 354 2 8 1703 786 232 36 72 chr3 146546861 146546895 -13052888 - B3 SINE B2 0 216 183 8 1703 261 0 0 0 chr3 146546895 146546924 -13052859 + (TG)n Simple_repeat Simple_repeat 1 29 0 8 1703 786 232 36 72 chr3 146546924 146547112 -13052671 - B3 SINE B2 -34 182 2 8 1703 270 0 89 0 chr3 146547660 146547705 -13052078 + (TTTA)n Simple_repeat Simple_repeat 1 49 0 8 1703 860 74 0 8 chr3 146548252 146548374 -13051409 - B1_Mus1 SINE Alu -25 123 3 8 1703 5329 58 24 18 chr3 146548711 146549511 -13050272 - RLTR22_Mur LTR ERVK -1043 805 1 8 1703 240 35 0 0 chr3 146549644 146549673 -13050110 + (TCTG)n Simple_repeat Simple_repeat 4 32 0 8 1703 703 206 200 0 chr3 146549896 146550066 -13049717 + B3 SINE B2 8 211 -5 9 1703 492 248 0 0 chr3 146550523 146550624 -13049159 - PB1D10 SINE Alu -14 103 3 9 1703 305 230 10 0 chr3 146551146 146551246 -13048537 + (TG)n Simple_repeat Simple_repeat 2 102 0 9 1703 229 293 0 0 chr3 146551274 146551332 -13048451 + (TATG)n Simple_repeat Simple_repeat 1 58 0 9 1703 181 114 43 43 chr3 146551332 146551378 -13048405 + (CATG)n Simple_repeat Simple_repeat 1 46 0 9 1703 198 0 0 0 chr3 146551901 146551923 -13047860 + (T)n Simple_repeat Simple_repeat 1 22 0 9 1703 906 224 23 23 chr3 146551994 146552209 -13047574 - B3 SINE B2 -1 215 1 9 1703 495 269 14 28 chr3 146553805 146553950 -13045833 - ORR1D2 LTR MaLR 0 370 228 9 1703 433 294 288 9 chr3 146554241 146554560 -13045223 - MLT1A1 LTR MaLR 0 408 1 9 1703 2096 119 6 74 chr3 146558277 146558630 -13041153 - ORR1A4 LTR MaLR 0 329 1 9 1703 226 89 0 62 chr3 146560118 146560166 -13039617 + CT-rich Low_complexity Low_complexity 3 47 0 1 1703 303 252 152 22 chr3 146560166 146560304 -13039479 - HAL1-3A_ME LINE L1 -419 2439 2284 1 1703 288 243 65 9 chr3 146560890 146560998 -13038785 - MIR3 SINE MIR -24 184 71 1 1703 26 30 0 0 chr3 146561722 146561755 -13038028 + AT_rich Low_complexity Low_complexity 1 33 0 1 1703 275 236 42 0 chr3 146561888 146561960 -13037823 + G-rich Low_complexity Low_complexity 6 80 0 1 1703 536 291 103 37 chr3 146561983 146562254 -13037529 - B4A SINE B4 -2 290 2 1 1703 366 145 45 32 chr3 146562266 146562423 -13037360 + (CA)n Simple_repeat Simple_repeat 2 160 0 1 1703 365 171 27 44 chr3 146562479 146562662 -13037121 + (CA)n Simple_repeat Simple_repeat 1 180 0 1 1703 180 0 0 0 chr3 146562716 146562736 -13037047 + (CACAC)n Simple_repeat Simple_repeat 1 20 0 1 1703 284 212 14 35 chr3 146562775 146562917 -13036866 + (CA)n Simple_repeat Simple_repeat 1 139 0 1 1703 686 192 102 6 chr3 146563151 146563308 -13036475 + B3 SINE B2 3 174 -42 1 1703 25 51 0 0 chr3 146563337 146563376 -13036407 + AT_rich Low_complexity Low_complexity 1 39 0 1 1703 373 214 24 12 chr3 146563487 146563572 -13036211 + PB1D10 SINE Alu 24 109 -8 1 1703 22 0 0 0 chr3 146565056 146565078 -13034705 + AT_rich Low_complexity Low_complexity 1 22 0 1 1703 225 0 0 0 chr3 146565111 146565136 -13034647 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 1 1703 21 36 0 0 chr3 146569308 146569336 -13030447 + AT_rich Low_complexity Low_complexity 1 28 0 1 1703 323 257 28 182 chr3 146569510 146569558 -13030225 - B1F2 SINE Alu 0 149 5 1 1703 471 290 32 0 chr3 146569558 146569682 -13030101 - ID_B1 SINE B4 -11 213 86 1 1703 261 156 89 0 chr3 146569946 146570036 -13029747 + (TA)n Simple_repeat Simple_repeat 2 99 0 1 1703 266 247 173 0 chr3 146570256 146570337 -13029446 + B1F SINE Alu 46 140 -9 1 1703 422 83 14 0 chr3 146570337 146570409 -13029374 + (CA)n Simple_repeat Simple_repeat 2 74 0 1 1703 23 0 0 0 chr3 146570969 146570992 -13028791 + AT_rich Low_complexity Low_complexity 1 23 0 1 1703 471 35 0 0 chr3 146571126 146571183 -13028600 + (TCTA)n Simple_repeat Simple_repeat 4 60 0 1 1703 892 169 6 6 chr3 146571272 146571451 -13028332 + CT-rich Low_complexity Low_complexity 2 180 0 1 1703 513 47 0 0 chr3 146571449 146571513 -13028270 + (TC)n Simple_repeat Simple_repeat 1 64 0 1 1703 1074 320 176 6 chr3 146571562 146572343 -13027440 - Lx8 LINE L1 -336 7137 6224 1 1703 576 42 0 0 chr3 146572757 146572828 -13026955 + (TA)n Simple_repeat Simple_repeat 1 71 0 1 1703 404 331 70 7 chr3 146573099 146573242 -13026541 - RSINE1 SINE B4 -4 161 10 1 1703 719 171 6 22 chr3 146573642 146573704 -13026079 + (TCCA)n Simple_repeat Simple_repeat 1 61 0 1 1703 539 29 0 14 chr3 146573704 146573774 -13026009 + (CAACC)n Simple_repeat Simple_repeat 5 73 0 1 1703 719 171 6 22 chr3 146573774 146573891 -13025892 + (TCCA)n Simple_repeat Simple_repeat 1 116 0 1 1703 4552 10 0 0 chr3 146574680 146575173 -13024610 - MT2_Mm LTR ERVL 0 493 1 1 1703 655 209 25 12 chr3 146575319 146575357 -13024426 - B3 SINE B2 -1 215 178 1 1703 423 0 0 0 chr3 146575357 146575404 -13024379 + (TG)n Simple_repeat Simple_repeat 1 47 0 1 1703 297 0 0 0 chr3 146575404 146575436 -13024347 + (GA)n Simple_repeat Simple_repeat 1 33 0 1 1703 655 209 25 12 chr3 146575436 146575556 -13024227 - B3 SINE B2 -39 177 56 1 1703 22 0 0 0 chr3 146576820 146576842 -13022941 + AT_rich Low_complexity Low_complexity 1 22 0 1 1703 237 243 0 67 chr3 146579575 146579650 -13020133 + PB1D10 SINE Alu 48 117 0 1 1703 40687 26 1 6 chr3 146581749 146587961 -13011822 - L1Md_A LINE L1 0 6582 404 1 1703 201 138 0 0 chr3 146587973 146588002 -13011781 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 1 1703 453 278 22 17 chr3 146588899 146589078 -13010705 + (GTGTG)n Simple_repeat Simple_repeat 1 180 0 1 1703 471 261 16 38 chr3 146589004 146589187 -13010596 + (AGGTG)n Simple_repeat Simple_repeat 1 179 0 1 1703 466 304 24 0 chr3 146589147 146589315 -13010468 + (GTGTG)n Simple_repeat Simple_repeat 1 172 0 1 1703 558 260 0 33 chr3 146589336 146589519 -13010264 + (GTGTG)n Simple_repeat Simple_repeat 1 177 0 1 1703 330 45 0 0 chr3 146591010 146591054 -13008729 + (ATG)n Simple_repeat Simple_repeat 2 45 0 1 1703 3502 55 0 0 chr3 146591426 146591846 -13007937 - L1_Mus1 LINE L1 0 6567 6148 1 1703 2819 93 255 15 chr3 146592396 146592867 -13006916 - MT2B2 LTR ERVL 0 584 1 1 1703 209 122 24 0 chr3 146593446 146593487 -13006296 + (TTG)n Simple_repeat Simple_repeat 2 43 0 1 1703 824 251 69 22 chr3 146594627 146594904 -13004879 + B4A SINE B4 3 292 0 1 1703 195 298 0 0 chr3 146594906 146594990 -13004793 + (CA)n Simple_repeat Simple_repeat 1 84 0 1 1703 588 206 6 17 chr3 146595009 146595187 -13004596 + (CATA)n Simple_repeat Simple_repeat 4 179 0 1 1703 246 273 0 0 chr3 146595190 146595245 -13004538 + (CA)n Simple_repeat Simple_repeat 1 55 0 1 1703 252 244 61 109 chr3 146595251 146595398 -13004385 - RMER12 LTR ERVK -483 839 700 1 1703 353 257 0 137 chr3 146595671 146595802 -13003981 + PB1D10 SINE Alu 5 117 0 1 1703 247 313 7 44 chr3 146595817 146595954 -13003829 + CT-rich Low_complexity Low_complexity 1 132 0 1 1703 1718 186 156 143 chr3 146597995 146598598 -13001185 - RMER19C LTR ERVK 0 611 1 1 1703 462 275 62 14 chr3 146598744 146598954 -13000829 - L1MA4 LINE L1 -382 5918 5699 1 1703 1156 116 54 16 chr3 146599184 146599368 -13000415 - B2_Mm1a SINE B2 -2 191 1 1 1703 24 53 0 0 chr3 146600637 146600675 -12999108 + AT_rich Low_complexity Low_complexity 1 38 0 1 1703 31 26 0 0 chr3 146602240 146602278 -12997505 + AT_rich Low_complexity Low_complexity 1 38 0 1 1703 411 73 0 0 chr3 146602278 146602333 -12997450 + (CA)n Simple_repeat Simple_repeat 2 56 0 1 1703 201 175 0 0 chr3 146602996 146603036 -12996747 + (CAG)n Simple_repeat Simple_repeat 2 41 0 1 1703 1011 112 0 0 chr3 146605003 146605155 -12994628 + (TCC)n Simple_repeat Simple_repeat 3 154 0 1 1703 486 108 0 0 chr3 146605828 146605902 -12993881 + (TC)n Simple_repeat Simple_repeat 1 74 0 1 1703 321 26 0 0 chr3 146605911 146605949 -12993834 + (TG)n Simple_repeat Simple_repeat 2 39 0 1 1703 459 278 82 100 chr3 146606319 146606599 -12993184 + B4 SINE B4 3 277 -15 1 1703 423 0 0 0 chr3 146606628 146606675 -12993108 + (CA)n Simple_repeat Simple_repeat 1 47 0 1 1703 261 286 0 38 chr3 146608345 146608425 -12991358 + B1F2 SINE Alu 6 82 -67 1 1703 245 349 9 9 chr3 146608469 146608576 -12991207 + (CATA)n Simple_repeat Simple_repeat 4 110 0 1 1703 699 262 69 0 chr3 146609703 146609905 -12989878 - B3 SINE B2 0 216 1 1 1703 1113 181 62 0 chr3 146611611 146611804 -12987979 + B3 SINE B2 2 206 -10 1 1703 855 244 24 10 chr3 146611814 146612021 -12987762 - B3 SINE B2 -6 210 1 1 1703 326 332 132 26 chr3 146612040 146612455 -12987328 - L2 LINE L2 -964 2455 1997 1 1703 391 218 29 29 chr3 146613164 146613268 -12986515 + ORR1D2 LTR MaLR 267 370 0 1 1703 240 311 206 56 chr3 146613498 146613624 -12986159 + ID_B1 SINE B4 79 223 -1 1 1703 452 297 0 35 chr3 146613514 146613629 -12986154 + PB1D7 SINE Alu 10 120 0 1 1703 282 181 14 14 chr3 146613629 146613702 -12986081 + (CAA)n Simple_repeat Simple_repeat 1 73 0 1 1703 351 0 0 0 chr3 146613704 146613743 -12986040 + (CCAA)n Simple_repeat Simple_repeat 1 39 0 1 1703 330 26 0 0 chr3 146613752 146613791 -12985992 + (CAA)n Simple_repeat Simple_repeat 3 41 0 1 1703 378 354 113 30 chr3 146614104 146614538 -12985245 + L1MC LINE L1 5324 5793 -2089 1 1703 1154 86 0 0 chr3 146614937 146615077 -12984706 - B1_Mus2 SINE Alu -6 141 2 1 1703 278 47 47 0 chr3 146615428 146615471 -12984312 + (TCTG)n Simple_repeat Simple_repeat 2 46 0 1 1703 448 193 257 0 chr3 146615535 146615644 -12984139 + B1F2 SINE Alu 7 143 -6 1 1703 266 323 0 41 chr3 146615941 146616038 -12983745 + ID_B1 SINE B4 131 223 -1 1 1703 182 62 31 0 chr3 146616116 146616148 -12983635 + (CAAAAA)n Simple_repeat Simple_repeat 3 35 0 1 1703 612 27 0 0 chr3 146618466 146618540 -12981243 + (CA)n Simple_repeat Simple_repeat 2 75 0 1 1703 186 103 0 0 chr3 146619687 146619716 -12980067 + (TG)n Simple_repeat Simple_repeat 1 29 0 1 1703 678 271 114 0 chr3 146620690 146620856 -12978927 + ID_B1 SINE B4 2 186 -38 1 1703 3563 45 0 0 chr3 146621730 146622166 -12977617 - L1_Mus1 LINE L1 0 6567 6160 1 1703 457 227 22 43 chr3 146623198 146623382 -12976401 + (TG)n Simple_repeat Simple_repeat 1 180 0 1 1703 28 0 0 0 chr3 146623516 146623544 -12976239 + AT_rich Low_complexity Low_complexity 1 28 0 1 1703 385 333 23 97 chr3 146623551 146623727 -12976056 - RSINE1 SINE B4 0 165 3 1 1703 403 287 109 14 chr3 146623727 146623863 -12975920 - B4 SINE B4 -62 230 82 1 1703 198 91 0 0 chr3 146623982 146624015 -12975768 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 1 1703 185 172 38 57 chr3 146624226 146624331 -12975452 + CT-rich Low_complexity Low_complexity 1 103 0 1 1703 416 336 8 0 chr3 146624356 146624478 -12975305 + ID_B1 SINE B4 81 203 -21 1 1703 490 288 0 0 chr3 146624910 146625021 -12974762 + B4A SINE B4 181 291 -1 1 1703 380 191 22 34 chr3 146625035 146625214 -12974569 + (CATA)n Simple_repeat Simple_repeat 1 177 0 1 1703 206 211 0 0 chr3 146625235 146625273 -12974510 + (CA)n Simple_repeat Simple_repeat 2 39 0 1 1703 180 0 0 0 chr3 146626997 146627017 -12972766 + (CA)n Simple_repeat Simple_repeat 1 20 0 1 1703 572 250 91 59 chr3 146627038 146627225 -12972558 - B3A SINE B2 -5 193 1 1 1703 208 312 0 25 chr3 146627498 146627577 -12972206 + G-rich Low_complexity Low_complexity 4 80 0 1 1703 21 0 0 0 chr3 146628643 146628664 -12971119 + AT_rich Low_complexity Low_complexity 1 21 0 1 1703 243 150 0 0 chr3 146628714 146628774 -12971009 + (CCCCAA)n Simple_repeat Simple_repeat 3 62 0 2 1703 189 0 0 0 chr3 146630001 146630022 -12969761 + (TA)n Simple_repeat Simple_repeat 2 22 0 2 1703 307 263 26 13 chr3 146631803 146631880 -12967903 - ID4_ SINE ID -3 80 3 2 1703 270 252 61 30 chr3 146634209 146634340 -12965443 + Lx4B LINE L1 4058 4192 -1954 2 1703 247 299 77 73 chr3 146635074 146635308 -12964475 + Lx4B LINE L1 5017 5251 -895 2 1703 491 277 14 49 chr3 146635328 146635472 -12964311 + ID_B1 SINE B4 86 224 0 2 1703 306 0 0 0 chr3 146635543 146635577 -12964206 + (CCAA)n Simple_repeat Simple_repeat 2 35 0 2 1703 352 246 72 44 chr3 146635852 146636090 -12963693 + Lx4B LINE L1 5642 5908 -265 2 1703 359 321 93 31 chr3 146636678 146637000 -12962783 + L1MB8 LINE L1 5496 5837 -341 2 1703 1583 225 12 55 chr3 146637363 146637762 -12962021 - Lx7 LINE L1 -376 7320 6939 2 1703 3084 207 126 34 chr3 146637763 146638659 -12961124 + L1_Mur3 LINE L1 4851 5829 -51 2 1703 364 302 69 53 chr3 146640052 146640241 -12959542 + MIR SINE MIR 70 265 -3 2 1703 515 290 71 65 chr3 146640477 146640632 -12959151 + B4A SINE B4 11 166 -126 2 1703 561 120 0 0 chr3 146640659 146640751 -12959032 + (CA)n Simple_repeat Simple_repeat 1 92 0 2 1703 216 158 0 0 chr3 146641634 146641672 -12958111 + (TATG)n Simple_repeat Simple_repeat 2 39 0 2 1703 354 263 158 44 chr3 146641849 146642032 -12957751 + MER46C DNA MER2_type 102 305 -33 2 1703 25 0 0 0 chr3 146642857 146642882 -12956901 + AT_rich Low_complexity Low_complexity 1 25 0 2 1703 333 0 0 0 chr3 146645070 146645107 -12954676 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 2 1703 25 0 0 0 chr3 146647250 146647275 -12952508 + AT_rich Low_complexity Low_complexity 1 25 0 2 1703 233 342 12 25 chr3 146647427 146647508 -12952275 - ID4_ SINE ID -2 81 2 2 1703 362 255 14 0 chr3 146647605 146647746 -12952037 + (TATATG)n Simple_repeat Simple_repeat 6 148 0 2 1703 787 181 11 11 chr3 146647738 146647917 -12951866 + (TATG)n Simple_repeat Simple_repeat 1 179 0 2 1703 714 237 0 8 chr3 146647931 146648191 -12951592 + (TATG)n Simple_repeat Simple_repeat 1 257 0 2 1703 614 272 67 75 chr3 146648207 146648489 -12951294 - B4A SINE B4 -12 280 1 2 1703 49 18 0 0 chr3 146648503 146648559 -12951224 + AT_rich Low_complexity Low_complexity 1 56 0 2 1703 1119 44 0 0 chr3 146649259 146649396 -12950387 + B1_Mus1 SINE Alu 11 147 -1 2 1703 198 0 0 0 chr3 146651216 146651238 -12948545 + (TAAA)n Simple_repeat Simple_repeat 3 24 0 2 1703 939 288 49 82 chr3 146651349 146651739 -12948044 + MTE2a LTR MaLR 3 379 0 2 1703 1961 147 120 18 chr3 146651975 146652308 -12947475 - ORR1B2 LTR MaLR 0 367 1 2 1703 337 326 109 58 chr3 146652640 146652752 -12947031 - Lx7 LINE L1 -29 7444 7328 2 1703 198 71 0 0 chr3 146652752 146652780 -12947003 + (CAAAT)n Simple_repeat Simple_repeat 2 29 0 2 1703 481 314 83 30 chr3 146652780 146653047 -12946736 - Lx7 LINE L1 -146 7327 7034 2 1703 514 227 14 9 chr3 146653255 146653473 -12946310 + C-rich Low_complexity Low_complexity 1 219 0 2 1703 1266 90 0 0 chr3 146653473 146653651 -12946132 + (TTCCC)n Simple_repeat Simple_repeat 1 178 0 2 1703 677 277 34 19 chr3 146653652 146653858 -12945925 - ID_B1 SINE B4 -15 209 1 2 1703 307 232 111 44 chr3 146654489 146654624 -12945159 + MIRc SINE MIR 52 195 -73 2 1703 798 67 30 30 chr3 146655477 146655677 -12944106 + (TATATG)n Simple_repeat Simple_repeat 1 200 0 2 1703 287 365 35 30 chr3 146656083 146656281 -12943502 + B4A SINE B4 88 286 -6 2 1703 651 26 0 0 chr3 146656287 146656364 -12943419 + (TC)n Simple_repeat Simple_repeat 1 77 0 2 1703 330 26 0 0 chr3 146656408 146656447 -12943336 + (GGGA)n Simple_repeat Simple_repeat 3 41 0 2 1703 208 139 28 0 chr3 146656813 146656849 -12942934 + CT-rich Low_complexity Low_complexity 2 38 0 2 1703 893 275 75 66 chr3 146658006 146658368 -12941415 - ORR1D2 LTR MaLR 0 370 6 2 1703 4076 71 26 39 chr3 146658418 146658961 -12940822 + L1_Mus2 LINE L1 6031 6566 0 2 1703 210 37 0 0 chr3 146658964 146658991 -12940792 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2 1703 267 103 0 0 chr3 146659353 146659392 -12940391 + (GGA)n Simple_repeat Simple_repeat 1 39 0 2 1703 394 299 28 72 chr3 146659604 146659784 -12939999 + B4A SINE B4 3 174 -118 2 1703 450 230 272 24 chr3 146660924 146661093 -12938690 + B3 SINE B2 1 211 -5 2 1703 397 245 31 95 chr3 146661407 146661634 -12938149 - Lx8 LINE L1 -6 7467 7205 2 1703 1015 190 25 15 chr3 146662856 146663059 -12936724 - ORR1D1 LTR MaLR 0 374 170 2 1703 374 318 0 19 chr3 146663071 146663228 -12936555 + (TG)n Simple_repeat Simple_repeat 1 154 0 2 1703 330 269 7 4 chr3 146663250 146663532 -12936251 + (TG)n Simple_repeat Simple_repeat 1 283 0 2 1703 279 264 0 0 chr3 146663543 146663683 -12936100 + (TG)n Simple_repeat Simple_repeat 1 140 0 2 1703 381 75 0 0 chr3 146665060 146665113 -12934670 + (TAGA)n Simple_repeat Simple_repeat 3 55 0 2 1703 807 260 27 86 chr3 146665370 146665627 -12934156 + B4A SINE B4 1 242 -50 2 1703 444 111 0 0 chr3 146665641 146665713 -12934070 + (CA)n Simple_repeat Simple_repeat 1 72 0 2 1703 324 0 0 0 chr3 146667200 146667236 -12932547 + (TG)n Simple_repeat Simple_repeat 1 36 0 2 1703 522 322 102 19 chr3 146668001 146668314 -12931469 - MLT1A0 LTR MaLR -8 357 19 2 1703 198 103 0 0 chr3 146668366 146668395 -12931388 + (TG)n Simple_repeat Simple_repeat 1 29 0 2 1703 555 335 94 7 chr3 146668697 146669105 -12930678 - L1M5 LINE L1 -417 5745 5310 2 1703 352 306 75 14 chr3 146669170 146669316 -12930467 + B4A SINE B4 122 276 -16 2 1703 772 226 11 39 chr3 146669385 146669565 -12930218 - B3 SINE B2 -1 215 41 2 1704 1034 135 0 24 chr3 146669585 146669752 -12930031 - L1_Mur2 LINE L1 -522 5355 5193 2 1704 956 129 98 12 chr3 146669751 146669924 -12929859 - L1_Mur2 LINE L1 -1116 4761 4574 2 1704 1154 216 100 0 chr3 146669925 146670175 -12929608 + Lx2B LINE L1 6721 6995 -5 2 1704 263 178 0 0 chr3 146670175 146670220 -12929563 - B3A SINE B2 -153 45 1 2 1704 386 332 21 21 chr3 146670438 146670678 -12929105 - L1MEc LINE L1 -1052 5267 5028 2 1704 269 276 76 25 chr3 146670716 146670835 -12928948 - B3 SINE B2 -6 210 86 2 1704 285 225 14 45 chr3 146671044 146671180 -12928603 - L1MEc LINE L1 -4063 2352 2214 2 1704 200 167 36 36 chr3 146671657 146671713 -12928070 + (TTTA)n Simple_repeat Simple_repeat 1 56 0 2 1704 1088 200 42 0 chr3 146671876 146672091 -12927692 - URR1A DNA MER1_type -2 224 1 2 1704 746 236 168 0 chr3 146672146 146672354 -12927429 + MTD LTR MaLR 44 286 -133 2 1704 407 333 40 13 chr3 146672902 146673054 -12926729 + B4A SINE B4 119 274 -18 2 1704 435 83 0 0 chr3 146673062 146673122 -12926661 + (CA)n Simple_repeat Simple_repeat 1 60 0 2 1704 1894 225 62 28 chr3 146673916 146674777 -12925006 + RCHARR1 DNA MER1_type 38 974 0 2 1704 4129 65 0 11 chr3 146674949 146675477 -12924306 - L1Md_F2 LINE L1 -11 6571 6050 2 1704 734 248 98 44 chr3 146675610 146675884 -12923899 + B4 SINE B4 1 289 -3 2 1704 240 312 59 59 chr3 146676376 146676478 -12923305 - MamRep605 Unknown Unknown -77 799 698 2 1704 204 225 0 0 chr3 146677481 146677521 -12922262 + (TCTCTG)n Simple_repeat Simple_repeat 3 42 0 2 1704 432 0 0 0 chr3 146678541 146678589 -12921194 + (TC)n Simple_repeat Simple_repeat 1 48 0 2 1704 387 0 0 0 chr3 146678589 146678631 -12921152 + (CA)n Simple_repeat Simple_repeat 1 43 0 2 1704 316 342 35 18 chr3 146678809 146678922 -12920861 + MIRc SINE MIR 44 158 -110 2 1704 404 317 97 0 chr3 146679024 146679169 -12920614 - RSINE1 SINE B4 -4 161 3 2 1704 238 182 30 0 chr3 146680123 146680189 -12919594 + (TG)n Simple_repeat Simple_repeat 2 69 0 2 1704 414 339 81 24 chr3 146680226 146680474 -12919309 - B4A SINE B4 -30 262 1 2 1704 260 256 79 34 chr3 146682922 146683011 -12916772 - MIRb SINE MIR -150 118 26 2 1704 24 32 0 0 chr3 146683858 146683889 -12915894 + AT_rich Low_complexity Low_complexity 1 31 0 2 1704 326 341 46 42 chr3 146684035 146684298 -12915485 - B4A SINE B4 -23 269 6 2 1704 634 198 211 17 chr3 146685295 146685328 -12914455 - B3 SINE B2 -1 215 183 2 1704 432 55 0 0 chr3 146685328 146685383 -12914400 + (TG)n Simple_repeat Simple_repeat 2 56 0 2 1704 634 198 211 17 chr3 146685383 146685529 -12914254 - B3 SINE B2 -34 182 1 2 1704 745 178 13 0 chr3 146685662 146685819 -12913964 + CT-rich Low_complexity Low_complexity 1 159 0 2 1704 1016 136 0 6 chr3 146685823 146686000 -12913783 + (TTTC)n Simple_repeat Simple_repeat 3 178 0 2 1704 270 0 0 0 chr3 146686002 146686032 -12913751 + (TTCC)n Simple_repeat Simple_repeat 3 32 0 2 1704 319 306 71 10 chr3 146686036 146686135 -12913648 - B1F1 SINE Alu -42 107 3 2 1704 303 347 49 43 chr3 146686481 146686666 -12913117 + L1M2b LINE L1 275 517 -6692 2 1704 569 287 139 73 chr3 146686716 146687182 -12912601 + L1MA8 LINE L1 5608 6104 -196 2 1704 7270 217 56 8 chr3 146687202 146688729 -12911054 - Lx6 LINE L1 -8 7452 5853 2 1704 1780 257 61 28 chr3 146688869 146689582 -12910201 + L1MB5 LINE L1 5161 5895 -279 2 1704 341 364 35 14 chr3 146689583 146689728 -12910055 + B3 SINE B2 1 148 -68 2 1704 396 0 0 0 chr3 146689745 146689789 -12909994 + (CA)n Simple_repeat Simple_repeat 1 44 0 2 1704 6518 152 29 3 chr3 146689846 146691505 -12908278 + Lx4B LINE L1 5004 6719 -339 2 1704 907 260 13 91 chr3 146694584 146694957 -12904826 + MTE2b LTR MaLR 36 379 0 2 1704 1765 154 93 11 chr3 146695422 146695776 -12904007 + Lx4B LINE L1 6676 7058 0 2 1704 1322 96 16 5 chr3 146696122 146696311 -12903472 - B2_Mm1t SINE B2 0 193 3 2 1704 1546 242 24 26 chr3 146697281 146697701 -12902082 - MTD LTR MaLR 0 419 1 2 1704 1186 300 34 0 chr3 146698583 146698933 -12900850 + MTE2b LTR MaLR 18 379 0 2 1704 644 294 80 59 chr3 146699941 146700227 -12899556 - B4 SINE B4 0 292 1 2 1704 180 0 0 0 chr3 146701389 146701409 -12898374 + (TG)n Simple_repeat Simple_repeat 1 20 0 2 1704 343 378 19 41 chr3 146701605 146701925 -12897858 - L2a LINE L2 -1 3425 3113 2 1704 2148 316 17 35 chr3 146702049 146702825 -12896958 - Lx8 LINE L1 -329 7144 6383 2 1704 620 269 77 39 chr3 146703007 146703266 -12896517 - L1MC1 LINE L1 -222 6111 5843 3 1704 264 340 100 15 chr3 146703424 146703624 -12896159 + MER74A LTR ERVL 206 422 -136 3 1704 823 294 86 4 chr3 146703756 146704092 -12895691 - L1MC1 LINE L1 -548 5796 5433 3 1704 418 329 29 0 chr3 146704290 146704427 -12895356 + RSINE1 SINE B4 18 158 -7 3 1704 329 237 62 50 chr3 146704795 146704955 -12894828 - L1MC1 LINE L1 -905 5439 5278 3 1704 317 326 86 13 chr3 146706629 146706862 -12892921 + L1MC4a LINE L1 6852 7101 -941 3 1704 358 289 134 36 chr3 146707309 146707612 -12892171 + L1MC4a LINE L1 7484 7838 -204 3 1704 448 286 38 0 chr3 146707642 146707775 -12892008 + MTEa LTR MaLR 1 138 -241 3 1704 225 0 0 0 chr3 146707806 146707831 -12891952 + (TG)n Simple_repeat Simple_repeat 1 25 0 3 1704 513 0 0 0 chr3 146708028 146708085 -12891698 + (TC)n Simple_repeat Simple_repeat 1 57 0 3 1704 435 68 0 0 chr3 146708085 146708143 -12891640 + (CA)n Simple_repeat Simple_repeat 1 59 0 3 1704 695 135 32 0 chr3 146708155 146708281 -12891502 - URR1A DNA MER1_type -43 183 54 3 1704 383 168 41 14 chr3 146708670 146708815 -12890968 + (CAGAGA)n Simple_repeat Simple_repeat 2 150 0 3 1704 257 0 0 29 chr3 146709489 146709523 -12890260 + (TTG)n Simple_repeat Simple_repeat 2 34 0 3 1704 212 231 0 0 chr3 146710263 146710315 -12889468 + MIRm SINE MIR 222 273 -3 3 1704 198 103 0 0 chr3 146710564 146710593 -12889190 + (TG)n Simple_repeat Simple_repeat 2 30 0 3 1704 502 190 16 0 chr3 146710595 146710716 -12889067 + (CA)n Simple_repeat Simple_repeat 2 124 0 3 1704 246 229 0 0 chr3 146710731 146710801 -12888982 + (TG)n Simple_repeat Simple_repeat 1 70 0 3 1704 347 309 60 36 chr3 146711515 146711531 -12888252 + MT2A LTR ERVL 3 49 -484 3 1704 399 257 88 0 chr3 146711531 146711644 -12888139 + MTE2a LTR MaLR 13 135 -244 3 1704 347 309 60 36 chr3 146711644 146711683 -12888100 + MT2A LTR ERVL 50 174 -359 3 1704 412 289 96 68 chr3 146711834 146712083 -12887700 + MT2A LTR ERVL 144 399 -134 3 1704 189 283 0 0 chr3 146712948 146713001 -12886782 + MIR SINE MIR 117 169 -93 3 1704 896 202 16 0 chr3 146713134 146713317 -12886466 - MTE2a LTR MaLR 0 379 194 3 1704 272 232 14 0 chr3 146713320 146713389 -12886394 + ORR1E LTR MaLR 1 70 -300 3 1704 2081 198 26 114 chr3 146713389 146714010 -12885773 - RMER19C LTR ERVK 0 611 46 3 1704 277 348 0 0 chr3 146714007 146714096 -12885687 + RMER19C LTR ERVK 347 435 -176 3 1704 227 174 65 0 chr3 146714072 146714118 -12885665 + RMER19C LTR ERVK 674 722 -180 3 1704 257 139 0 0 chr3 146714102 146714145 -12885638 - RMER19C LTR ERVK -568 43 1 3 1704 1003 271 40 17 chr3 146714145 146714429 -12885354 + ORR1E LTR MaLR 67 357 -2 3 1704 349 286 51 130 chr3 146714462 146714639 -12885144 - MTE2a LTR MaLR -212 167 5 3 1704 481 261 0 9 chr3 146714743 146714859 -12884924 - Lx9 LINE L1 -470 7174 7060 3 1704 2225 128 26 26 chr3 146714863 146715249 -12884534 - ORR1B1 LTR MaLR -8 386 1 3 1704 816 182 141 0 chr3 146715249 146715441 -12884342 - Lx9 LINE L1 -580 7064 6846 3 1704 1426 218 32 37 chr3 146715433 146715781 -12884002 + Lx9 LINE L1 7171 7516 -128 3 1704 735 192 0 0 chr3 146715790 146716078 -12883705 + (TCTA)n Simple_repeat Simple_repeat 1 288 0 3 1704 474 241 28 17 chr3 146716078 146716138 -12883645 + Lx9 LINE L1 7460 7517 -127 3 1704 345 82 0 0 chr3 146716138 146716187 -12883596 + (TATG)n Simple_repeat Simple_repeat 2 50 0 3 1704 474 241 28 17 chr3 146716187 146716303 -12883480 + Lx9 LINE L1 7518 7637 -7 3 1704 249 33 0 0 chr3 146716881 146716911 -12882872 + (CA)n Simple_repeat Simple_repeat 2 31 0 3 1704 193 53 0 73 chr3 146717438 146717479 -12882304 + (TTTC)n Simple_repeat Simple_repeat 3 40 0 3 1704 465 76 0 0 chr3 146717730 146717796 -12881987 + (GGAA)n Simple_repeat Simple_repeat 1 66 0 3 1704 227 348 66 30 chr3 146717943 146718109 -12881674 + MIRb SINE MIR 29 200 -68 3 1704 333 360 53 20 chr3 146718437 146718587 -12881196 - MER91A DNA Tip100 -25 171 17 3 1704 722 275 157 11 chr3 146718773 146719118 -12880665 - MTD LTR MaLR -4 375 26 3 1704 272 205 157 0 chr3 146719131 146719214 -12880569 - PB1D10 SINE Alu -19 101 6 3 1704 22 0 0 0 chr3 146720354 146720376 -12879407 + AT_rich Low_complexity Low_complexity 1 22 0 3 1704 509 0 16 0 chr3 146720843 146720904 -12878879 + (GA)n Simple_repeat Simple_repeat 2 63 0 3 1704 189 0 0 0 chr3 146721933 146721954 -12877829 + (T)n Simple_repeat Simple_repeat 1 21 0 3 1704 1577 189 118 3 chr3 146722090 146722429 -12877354 - ORR1C1 LTR MaLR 0 378 1 3 1704 454 104 20 30 chr3 146722488 146722587 -12877196 + (TG)n Simple_repeat Simple_repeat 1 98 0 3 1704 547 286 83 0 chr3 146722587 146722755 -12877028 - B3A SINE B2 -16 182 1 3 1704 766 176 7 7 chr3 146722906 146723049 -12876734 - B1_Mus1 SINE Alu 0 148 6 3 1704 434 357 12 0 chr3 146723050 146723221 -12876562 + MLT1F1 LTR MaLR 20 192 -377 3 1704 298 254 74 58 chr3 146723397 146723518 -12876265 + MLT1F1 LTR MaLR 447 569 0 3 1704 27 0 0 0 chr3 146724024 146724051 -12875732 + AT_rich Low_complexity Low_complexity 1 27 0 3 1704 279 0 0 0 chr3 146726020 146726051 -12873732 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 3 1704 468 0 0 0 chr3 146727410 146727462 -12872321 + (CA)n Simple_repeat Simple_repeat 2 53 0 3 1704 1128 89 2 15 chr3 146728063 146728520 -12871263 + (CA)n Simple_repeat Simple_repeat 1 450 0 3 1704 613 256 17 29 chr3 146732242 146732415 -12867368 + B4 SINE B4 2 172 -120 3 1704 252 0 0 0 chr3 146732443 146732471 -12867312 + (CAAAT)n Simple_repeat Simple_repeat 3 30 0 3 1704 406 161 15 8 chr3 146732577 146732708 -12867075 + (CAGA)n Simple_repeat Simple_repeat 4 135 0 3 1704 351 0 0 0 chr3 146732712 146732751 -12867032 + (GA)n Simple_repeat Simple_repeat 1 39 0 3 1704 293 314 74 34 chr3 146734117 146734265 -12865518 - MLT1K LTR MaLR -287 308 137 3 1704 3256 41 0 3 chr3 146734461 146734850 -12864933 + L1_Mus2 LINE L1 6178 6565 -1 3 1704 200 35 35 0 chr3 146736214 146736243 -12863540 + (ATG)n Simple_repeat Simple_repeat 2 31 0 3 1704 369 360 7 13 chr3 146736323 146736475 -12863308 - MIR SINE MIR -70 192 42 3 1704 261 0 0 0 chr3 146737665 146737694 -12862089 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 3 1704 361 262 0 27 chr3 146737710 146737820 -12861963 - ID_B1 SINE B4 -37 187 81 3 1704 368 227 168 89 chr3 146738005 146738184 -12861599 - L1M5 LINE L1 -389 5775 5583 3 1704 315 270 0 13 chr3 146738187 146738262 -12861521 + RSINE1 SINE B4 4 77 -88 3 1704 234 0 0 0 chr3 146738262 146738288 -12861495 + (TG)n Simple_repeat Simple_repeat 1 26 0 3 1704 441 0 0 0 chr3 146738288 146738336 -12861447 + (GA)n Simple_repeat Simple_repeat 1 49 0 3 1704 393 222 10 72 chr3 146738369 146738466 -12861317 - RLTR20A2 LTR ERVK 0 541 451 3 1704 378 0 0 0 chr3 146738467 146738509 -12861274 + (CA)n Simple_repeat Simple_repeat 2 43 0 3 1704 2298 145 2 95 chr3 146738517 146738960 -12860823 - Lx2 LINE L1 -63 6934 6533 3 1704 1946 102 86 3 chr3 146738960 146739285 -12860498 - RLTR20A2 LTR ERVK -226 352 1 3 1704 1788 191 338 4 chr3 146739600 146740058 -12859725 + RMER1A Other Other 2 612 -418 3 1704 571 183 8 8 chr3 146740080 146740201 -12859582 + RMER1A Other Other 898 1018 -12 3 1704 495 0 0 0 chr3 146740809 146740864 -12858919 + (TG)n Simple_repeat Simple_repeat 2 56 0 3 1704 323 313 124 8 chr3 146740980 146741334 -12858449 - L1M5 LINE L1 -2705 3441 3047 3 1704 420 71 0 0 chr3 146741499 146741555 -12858228 + (TG)n Simple_repeat Simple_repeat 2 57 0 3 1704 389 350 91 3 chr3 146741606 146741893 -12857890 + Kanga1 DNA Tc2 98 409 -1336 3 1704 523 214 212 5 chr3 146741888 146742081 -12857702 + Kanga1 DNA Tc2 1511 1743 -2 3 1704 278 307 78 17 chr3 146742084 146742263 -12857520 - MIR SINE MIR -67 195 6 3 1704 245 255 0 0 chr3 146743016 146743067 -12856716 + L2c LINE L2 3282 3332 -55 3 1704 832 164 15 94 chr3 146744232 146744434 -12855349 + RMER1C Other Other 1157 1342 0 3 1704 354 74 0 0 chr3 146745249 146745303 -12854480 + (T)n Simple_repeat Simple_repeat 1 54 0 3 1704 321 82 0 0 chr3 146745971 146746020 -12853763 + (CAAA)n Simple_repeat Simple_repeat 2 50 0 3 1704 222 118 0 0 chr3 146746861 146746895 -12852888 + (TTTA)n Simple_repeat Simple_repeat 4 37 0 3 1704 756 108 13 7 chr3 146747282 146747431 -12852352 + (CA)n Simple_repeat Simple_repeat 1 150 0 3 1704 664 42 10 10 chr3 146747431 146747527 -12852256 + (GA)n Simple_repeat Simple_repeat 2 98 0 3 1704 306 0 0 0 chr3 146749058 146749092 -12850691 + (TTTC)n Simple_repeat Simple_repeat 4 37 0 3 1704 410 326 126 10 chr3 146749973 146750171 -12849612 + MER58A DNA MER1_type 4 224 0 3 1704 207 234 0 0 chr3 146750442 146750489 -12849294 - L2b LINE L2 0 3375 3329 3 1704 264 122 0 0 chr3 146750923 146750964 -12848819 + (CAG)n Simple_repeat Simple_repeat 1 41 0 3 1704 462 246 151 6 chr3 146751034 146751206 -12848577 + RMER30 DNA MER1_type 1 197 -5 3 1704 285 51 0 0 chr3 146753224 146753263 -12846520 + (T)n Simple_repeat Simple_repeat 1 39 0 3 1704 363 317 33 8 chr3 146753626 146753747 -12846036 + ID_B1 SINE B4 92 215 -9 3 1704 481 271 35 7 chr3 146754070 146754211 -12845572 - ID_B1 SINE B4 0 224 80 3 1704 189 0 0 0 chr3 146754214 146754235 -12845548 + (T)n Simple_repeat Simple_repeat 1 21 0 3 1704 22 35 0 0 chr3 146754637 146754666 -12845117 + AT_rich Low_complexity Low_complexity 1 29 0 3 1704 28 0 0 0 chr3 146755550 146755578 -12844205 + AT_rich Low_complexity Low_complexity 1 28 0 3 1704 500 256 165 11 chr3 146756379 146756561 -12843222 + ID_B1 SINE B4 5 214 -10 3 1704 244 172 17 17 chr3 146756697 146756756 -12843027 + (TTTG)n Simple_repeat Simple_repeat 2 60 0 3 1704 225 0 0 0 chr3 146756789 146756814 -12842969 + (TCTG)n Simple_repeat Simple_repeat 1 25 0 3 1704 549 44 0 0 chr3 146757166 146757234 -12842549 + (TCTA)n Simple_repeat Simple_repeat 2 69 0 3 1704 268 302 75 9 chr3 146757301 146757408 -12842375 + PB1D10 SINE Alu 3 116 -1 3 1704 348 24 0 0 chr3 146759600 146759641 -12840142 + (TAA)n Simple_repeat Simple_repeat 2 42 0 3 1704 219 125 0 0 chr3 146759808 146759848 -12839935 + (TCTG)n Simple_repeat Simple_repeat 1 40 0 3 1704 23 54 0 0 chr3 146760087 146760124 -12839659 + AT_rich Low_complexity Low_complexity 1 37 0 3 1704 231 61 0 0 chr3 146760864 146760897 -12838886 + (A)n Simple_repeat Simple_repeat 1 33 0 3 1704 199 253 109 11 chr3 146762539 146762631 -12837152 + MIRb SINE MIR 52 152 -116 3 1704 249 167 0 0 chr3 146762755 146762809 -12836974 + (CAT)n Simple_repeat Simple_repeat 2 55 0 3 1704 294 50 0 0 chr3 146765028 146765068 -12834715 + (TCTG)n Simple_repeat Simple_repeat 4 43 0 3 1704 465 232 410 0 chr3 146765098 146765276 -12834507 - B4 SINE B4 -41 251 1 4 1704 577 294 30 40 chr3 146767639 146767841 -12831942 - MLT2B2 LTR ERVL -314 201 2 4 1704 1035 263 87 6 chr3 146768008 146768352 -12831431 + MTEa LTR MaLR 8 379 0 4 1704 1447 55 10 10 chr3 146769924 146770127 -12829656 - L1Md_F3 LINE L1 0 6584 6382 4 1704 39456 42 1 14 chr3 146770128 146776304 -12823479 - L1Md_A LINE L1 -2 6580 487 4 1704 2614 91 33 8 chr3 146776305 146776671 -12823112 - L1Md_F3 LINE L1 -190 6394 6020 4 1704 23 33 0 0 chr3 146777815 146777845 -12821938 + AT_rich Low_complexity Low_complexity 1 30 0 4 1704 267 352 45 32 chr3 146778629 146778849 -12820934 + MLT1K LTR MaLR 248 470 -125 4 1704 1105 97 14 0 chr3 146779677 146779822 -12819961 - B1_Mus1 SINE Alu 0 148 2 4 1704 526 205 33 83 chr3 146779898 146780079 -12819704 - RLTR11B LTR ERVK -15 438 267 4 1704 833 219 37 57 chr3 146780157 146780435 -12819348 - RLTR11B LTR ERVK -176 265 5 4 1704 810 143 7 0 chr3 146781575 146781715 -12818068 - B1_Mus1 SINE Alu 0 148 8 4 1704 294 252 39 97 chr3 146781602 146781756 -12818027 - MT2B LTR ERVL -323 278 134 4 1704 387 0 0 0 chr3 146781784 146781827 -12817956 + (T)n Simple_repeat Simple_repeat 1 43 0 4 1704 471 170 100 36 chr3 146781827 146781937 -12817846 + B1_Mm SINE Alu 24 140 -7 4 1704 533 164 55 0 chr3 146782165 146782275 -12817508 - Lx2B LINE L1 0 7000 6885 4 1704 739 129 0 15 chr3 146782438 146782572 -12817211 + (TCCC)n Simple_repeat Simple_repeat 3 134 0 4 1704 380 308 102 28 chr3 146782574 146782751 -12817032 + MLT1A LTR MaLR 174 363 -11 4 1704 204 40 0 0 chr3 146782890 146782915 -12816868 + (CAAAA)n Simple_repeat Simple_repeat 3 27 0 4 1704 475 244 103 34 chr3 146783216 146783420 -12816363 + LTR81A LTR ERV1? 1131 1348 -2 4 1704 234 62 0 0 chr3 146783578 146783610 -12816173 + (CCCCCA)n Simple_repeat Simple_repeat 3 34 0 4 1704 230 241 167 12 chr3 146784017 146784101 -12815682 + MLT1A LTR MaLR 267 363 -11 4 1704 780 258 125 27 chr3 146784279 146784614 -12815169 - ORR1D2 LTR MaLR -1 369 2 4 1704 733 251 22 98 chr3 146785352 146785626 -12814157 - MER2 DNA MER2_type -2 343 91 4 1704 234 208 0 0 chr3 146785697 146785750 -12814033 + (TG)n Simple_repeat Simple_repeat 2 54 0 4 1704 405 0 0 0 chr3 146786080 146786125 -12813658 + (TC)n Simple_repeat Simple_repeat 2 46 0 4 1704 243 0 0 0 chr3 146786125 146786151 -12813632 + (TG)n Simple_repeat Simple_repeat 2 28 0 4 1704 596 324 52 45 chr3 146786186 146786454 -12813329 - B4 SINE B4 -4 288 19 4 1704 31 26 0 0 chr3 146788855 146788893 -12810890 + AT_rich Low_complexity Low_complexity 1 38 0 4 1704 485 80 13 0 chr3 146789362 146789437 -12810346 + (TCC)n Simple_repeat Simple_repeat 2 77 0 4 1704 230 245 0 0 chr3 146789799 146789848 -12809935 + (CATA)n Simple_repeat Simple_repeat 2 50 0 4 1704 645 14 0 0 chr3 146791736 146791810 -12807973 + (TTTC)n Simple_repeat Simple_repeat 2 75 0 4 1704 198 0 0 0 chr3 146792770 146792792 -12806991 + (T)n Simple_repeat Simple_repeat 1 22 0 4 1704 196 370 29 29 chr3 146793579 146793718 -12806065 + L2c LINE L2 3241 3379 -8 4 1704 241 231 0 0 chr3 146793930 146794023 -12805760 + (CA)n Simple_repeat Simple_repeat 1 93 0 4 1704 289 258 122 17 chr3 146794367 146794548 -12805235 - L2a LINE L2 -253 3173 2974 4 1704 351 0 0 0 chr3 146795167 146795206 -12804577 + (TG)n Simple_repeat Simple_repeat 2 40 0 4 1704 904 287 51 11 chr3 146795235 146795510 -12804273 - B4A SINE B4 -4 288 3 4 1704 284 248 56 19 chr3 146795887 146795994 -12803789 - MIRb SINE MIR -50 218 108 4 1704 272 280 19 29 chr3 146796055 146796158 -12803625 - MIRc SINE MIR -145 123 22 4 1704 245 348 113 68 chr3 146796312 146796577 -12803206 + ORR1E LTR MaLR 51 327 -32 4 1704 264 167 0 0 chr3 146796621 146796669 -12803114 + (TG)n Simple_repeat Simple_repeat 1 48 0 4 1704 366 290 55 59 chr3 146796771 146796991 -12802792 - MLT1B LTR MaLR -125 265 47 4 1704 204 121 30 0 chr3 146797036 146797069 -12802714 + CT-rich Low_complexity Low_complexity 1 34 0 4 1704 186 24 22 89 chr3 146797846 146797891 -12801892 + (TTTTTG)n Simple_repeat Simple_repeat 2 43 0 4 1704 524 56 0 14 chr3 146798221 146798294 -12801489 + (TG)n Simple_repeat Simple_repeat 1 72 0 4 1704 589 330 50 18 chr3 146798332 146798613 -12801170 - B4A SINE B4 -2 290 1 4 1704 234 264 0 0 chr3 146799420 146799473 -12800310 + (TCTA)n Simple_repeat Simple_repeat 1 53 0 4 1704 189 196 0 0 chr3 146799477 146799523 -12800260 + (CCTG)n Simple_repeat Simple_repeat 3 48 0 4 1704 181 119 23 23 chr3 146800266 146800309 -12799474 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 4 1705 426 282 66 15 chr3 146801332 146801530 -12798253 + ORSL DNA Tip100 1 208 -67 4 1705 272 203 0 59 chr3 146801560 146801628 -12798155 + L1_Mur3 LINE L1 239 302 -7410 4 1705 711 157 17 1 chr3 146801624 146801747 -12798036 + Lx7 LINE L1 6804 6946 -527 4 1705 1648 209 57 139 chr3 146801757 146801855 -12797928 + Lx7 LINE L1 7161 7252 -444 4 1705 4954 74 5 0 chr3 146801855 146802505 -12797278 + L1_Mus3 LINE L1 5985 6637 -1 4 1705 1648 209 57 139 chr3 146802505 146802837 -12796946 + Lx7 LINE L1 7253 7514 -182 4 1705 215 31 0 30 chr3 146802837 146802870 -12796913 + (TTTTA)n Simple_repeat Simple_repeat 4 35 0 4 1705 1648 209 57 139 chr3 146802870 146803022 -12796761 + Lx7 LINE L1 7515 7695 -1 4 1705 303 28 0 0 chr3 146803201 146803237 -12796546 + (TG)n Simple_repeat Simple_repeat 1 36 0 4 1705 303 228 0 0 chr3 146804231 146804323 -12795460 + (CAA)n Simple_repeat Simple_repeat 2 93 0 4 1705 303 163 0 0 chr3 146805693 146805742 -12794041 - HAL1-3A_ME LINE L1 -835 2023 1975 4 1705 405 234 35 49 chr3 146806114 146806258 -12793525 + L3 LINE CR1 2166 2307 -2182 4 1705 762 198 0 0 chr3 146807218 146807375 -12792408 + CT-rich Low_complexity Low_complexity 6 162 0 4 1705 23 54 0 0 chr3 146807469 146807506 -12792277 + AT_rich Low_complexity Low_complexity 1 37 0 4 1705 351 206 101 20 chr3 146807520 146807628 -12792155 - PB1D7 SINE Alu -1 119 1 4 1705 311 386 81 14 chr3 146809446 146809669 -12790114 + LTR16A LTR ERVL 209 446 -5 4 1705 446 298 7 60 chr3 146809857 146809945 -12789838 + B3A SINE B2 41 127 -71 4 1705 2145 130 3 18 chr3 146809945 146810274 -12789509 - ORR1A2 LTR MaLR -1 326 3 4 1705 446 298 7 60 chr3 146810274 146810335 -12789448 + B3A SINE B2 128 182 -16 4 1705 1293 67 0 0 chr3 146810734 146811156 -12788627 + (CA)n Simple_repeat Simple_repeat 1 422 0 4 1705 255 93 0 0 chr3 146811156 146811199 -12788584 + (GA)n Simple_repeat Simple_repeat 1 43 0 4 1705 9579 49 1 3 chr3 146811835 146813344 -12786439 + L1Md_F3 LINE L1 4703 6207 -377 4 1705 5782 37 1 0 chr3 146813500 146814179 -12785604 + L1Md_F2 LINE L1 5902 6581 -1 4 1705 22 56 0 0 chr3 146814191 146814227 -12785556 + AT_rich Low_complexity Low_complexity 1 36 0 4 1705 649 189 225 39 chr3 146814923 146815065 -12784718 + B3 SINE B2 1 182 -34 4 1705 1038 111 0 0 chr3 146815065 146815535 -12784248 + (CA)n Simple_repeat Simple_repeat 1 470 0 4 1705 649 189 225 39 chr3 146815535 146815569 -12784214 + B3 SINE B2 183 215 -1 4 1705 243 152 0 0 chr3 146815657 146815703 -12784080 + (CA)n Simple_repeat Simple_repeat 1 46 0 4 1705 584 255 132 32 chr3 146815727 146816007 -12783776 + L1MA4 LINE L1 5487 5794 -506 4 1705 23 0 0 0 chr3 146816047 146816070 -12783713 + AT_rich Low_complexity Low_complexity 1 23 0 4 1705 463 213 78 8 chr3 146816108 146816236 -12783547 + L1MA4 LINE L1 5782 5918 -382 4 1705 188 111 28 0 chr3 146816260 146816296 -12783487 + (TG)n Simple_repeat Simple_repeat 1 37 0 4 1705 524 284 115 4 chr3 146816601 146816845 -12782938 + L1ME3 LINE L1 5878 6148 -14 4 1705 315 0 0 0 chr3 146817622 146817657 -12782126 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 4 1705 323 270 222 5 chr3 146818609 146818821 -12780962 + MIR SINE MIR 2 259 -3 4 1705 309 327 18 0 chr3 146818982 146819095 -12780688 - L3 LINE CR1 -828 3661 3547 4 1705 195 125 0 0 chr3 146819188 146819228 -12780555 + (T)n Simple_repeat Simple_repeat 1 40 0 4 1705 697 267 113 15 chr3 146819324 146819590 -12780193 - B4 SINE B4 0 292 1 4 1705 194 318 26 26 chr3 146820009 146820122 -12779661 + MIR SINE MIR 24 136 -126 4 1705 237 242 0 0 chr3 146821189 146821251 -12778532 + Lx8 LINE L1 7395 7456 -17 4 1705 1089 234 29 99 chr3 146821283 146821657 -12778126 - ORR1E LTR MaLR -11 348 1 4 1705 192 346 47 19 chr3 146821990 146822096 -12777687 - MIRc SINE MIR -105 163 55 4 1705 207 0 0 0 chr3 146822202 146822225 -12777558 + (CAA)n Simple_repeat Simple_repeat 2 24 0 4 1705 295 178 25 99 chr3 146822233 146822314 -12777469 + Charlie4z DNA MER1_type 56 130 -37 4 1705 270 0 0 0 chr3 146824951 146824981 -12774802 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 4 1705 219 69 0 0 chr3 146825424 146825453 -12774330 + (TG)n Simple_repeat Simple_repeat 1 29 0 4 1705 180 267 0 62 chr3 146826199 146826263 -12773520 + MIRb SINE MIR 193 252 -16 4 1705 441 0 0 0 chr3 146828729 146828778 -12771005 + (TG)n Simple_repeat Simple_repeat 2 50 0 4 1705 198 0 0 0 chr3 146830020 146830042 -12769741 + (AGATG)n Simple_repeat Simple_repeat 1 22 0 4 1705 430 248 115 0 chr3 146830984 146831097 -12768686 - B1F SINE Alu -23 126 1 4 1705 711 240 20 119 chr3 146831099 146831402 -12768381 - MER33 DNA MER1_type -34 290 18 4 1705 617 101 54 0 chr3 146832804 146832952 -12766831 + (CAGA)n Simple_repeat Simple_repeat 4 159 0 4 1705 198 91 0 0 chr3 146833465 146833498 -12766285 + (GTTTG)n Simple_repeat Simple_repeat 2 34 0 4 1705 569 224 62 22 chr3 146833715 146833893 -12765890 + MLT1E2 LTR MaLR 26 210 -417 4 1705 274 308 77 50 chr3 146833964 146834145 -12765638 + MLT1E2 LTR MaLR 317 502 -3 4 1705 234 287 58 0 chr3 146834603 146834690 -12765093 - MLT1B LTR MaLR -8 382 291 4 1705 1856 191 39 14 chr3 146834673 146835034 -12764749 + MTC LTR MaLR 48 417 -4 4 1705 306 337 17 40 chr3 146835109 146835282 -12764501 - MLT1B LTR MaLR -221 169 1 4 1705 984 122 0 27 chr3 146835964 146836149 -12763634 + (TCC)n Simple_repeat Simple_repeat 1 180 0 4 1705 253 282 17 68 chr3 146840130 146840248 -12759535 + PB1D10 SINE Alu 5 116 -1 4 1705 234 0 0 0 chr3 146840265 146840291 -12759492 + (CAAT)n Simple_repeat Simple_repeat 2 27 0 5 1705 1449 243 84 13 chr3 146840441 146840820 -12758963 + MTC LTR MaLR 8 413 -8 5 1705 222 289 118 0 chr3 146840826 146840902 -12758881 - PB1D10 SINE Alu -32 85 1 5 1705 348 83 0 0 chr3 146841628 146841676 -12758107 + (TG)n Simple_repeat Simple_repeat 1 48 0 5 1705 267 287 92 96 chr3 146841689 146841982 -12757801 - B4A SINE B4 0 292 1 5 1705 462 61 0 0 chr3 146846061 146846127 -12753656 + (TC)n Simple_repeat Simple_repeat 1 66 0 5 1705 417 20 0 0 chr3 146846127 146846177 -12753606 + (CA)n Simple_repeat Simple_repeat 1 50 0 5 1705 458 328 63 55 chr3 146847198 146847546 -12752237 - MLT1A0 LTR MaLR -4 361 11 5 1705 376 278 31 31 chr3 146847762 146847892 -12751891 - RMER10B LTR ERVL -75 323 194 5 1705 487 257 63 35 chr3 146847921 146848175 -12751608 - RMER10B LTR ERVL -133 265 5 5 1705 753 114 0 0 chr3 146848541 146848655 -12751128 + (TTTC)n Simple_repeat Simple_repeat 3 116 0 5 1705 1340 62 6 0 chr3 146848662 146848841 -12750942 + (TTCTCC)n Simple_repeat Simple_repeat 1 180 0 5 1705 546 271 0 0 chr3 146848992 146849110 -12750673 + B3A SINE B2 1 118 -80 5 1705 1227 41 6 23 chr3 146850300 146850476 -12749307 + (TCTA)n Simple_repeat Simple_repeat 1 173 0 5 1705 540 103 0 49 chr3 146850529 146850652 -12749131 + (TCTA)n Simple_repeat Simple_repeat 2 118 0 5 1705 27 29 0 0 chr3 146850995 146851029 -12748754 + AT_rich Low_complexity Low_complexity 1 34 0 5 1705 399 304 15 55 chr3 146852041 146852243 -12747540 + B3A SINE B2 5 198 0 5 1705 2603 246 93 27 chr3 146852596 146853158 -12746625 + L1MA9 LINE L1 5174 5789 -523 5 1705 513 84 0 0 chr3 146853158 146853229 -12746554 + (CA)n Simple_repeat Simple_repeat 2 72 0 5 1705 2603 241 93 29 chr3 146853229 146853649 -12746134 + L1MA9 LINE L1 5790 6224 -88 5 1705 209 108 27 0 chr3 146854777 146854814 -12744969 + (TC)n Simple_repeat Simple_repeat 1 38 0 5 1705 219 36 0 0 chr3 146856122 146856150 -12743633 + (TTTTTG)n Simple_repeat Simple_repeat 2 29 0 5 1705 300 309 51 40 chr3 146856171 146856348 -12743435 - MIR SINE MIR -43 219 41 5 1705 344 336 82 45 chr3 146856441 146856684 -12743099 - HAL1 LINE L1 -1065 1442 1191 5 1705 383 228 97 65 chr3 146856988 146857143 -12742640 + MLT1A LTR MaLR 1 160 -214 5 1705 221 169 17 0 chr3 146857716 146857775 -12742008 + (TCTA)n Simple_repeat Simple_repeat 2 61 0 5 1705 405 39 0 0 chr3 146857778 146857829 -12741954 + (TATG)n Simple_repeat Simple_repeat 2 52 0 5 1705 1276 55 0 22 chr3 146857829 146858012 -12741771 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 5 1705 350 255 8 124 chr3 146858044 146858165 -12741618 - PB1D9 SINE Alu -7 113 7 5 1705 344 333 9 62 chr3 146859164 146859391 -12740392 - B3 SINE B2 -1 215 1 5 1705 21 0 0 0 chr3 146860283 146860304 -12739479 + AT_rich Low_complexity Low_complexity 1 21 0 5 1705 702 229 21 48 chr3 146860318 146860506 -12739277 - B3A SINE B2 -12 186 4 5 1705 21 36 0 0 chr3 146860680 146860708 -12739075 + AT_rich Low_complexity Low_complexity 1 28 0 5 1705 530 283 124 39 chr3 146862320 146862651 -12737132 - MLT2D LTR ERVL -55 359 1 5 1705 22 56 0 0 chr3 146862988 146863024 -12736759 + AT_rich Low_complexity Low_complexity 1 36 0 5 1705 252 175 0 0 chr3 146864100 146864140 -12735643 - ID4 SINE ID -16 67 28 5 1705 237 250 67 0 chr3 146864140 146864160 -12735623 - ID SINE ID -156 68 5 5 1705 320 213 33 65 chr3 146864166 146864292 -12735491 - B1F SINE Alu 0 149 22 5 1705 439 307 16 8 chr3 146864554 146864682 -12735101 - RSINE1 SINE B4 -35 130 2 5 1705 495 78 0 0 chr3 146865440 146865517 -12734266 + (T)n Simple_repeat Simple_repeat 1 77 0 5 1705 1139 88 0 0 chr3 146865517 146865664 -12734119 - B1_Mus1 SINE Alu 0 148 2 5 1705 2810 103 35 0 chr3 146866277 146866683 -12733100 - BGLII_Mus LTR ERVK 0 422 3 5 1705 34 0 0 0 chr3 146867968 146868002 -12731781 + AT_rich Low_complexity Low_complexity 1 34 0 5 1705 3222 254 125 4 chr3 146868126 146868449 -12731334 + Lx6 LINE L1 6533 6864 -596 5 1705 618 14 0 0 chr3 146868449 146868520 -12731263 + (GA)n Simple_repeat Simple_repeat 2 72 0 5 1705 3222 254 125 4 chr3 146868520 146869010 -12730773 + Lx6 LINE L1 6865 7444 -16 5 1705 232 196 0 0 chr3 146870220 146870266 -12729517 - L1ME1 LINE L1 -2 6177 6132 5 1705 270 251 87 107 chr3 146870259 146870288 -12729495 - L1MB8 LINE L1 -4 6180 6150 5 1705 599 253 184 0 chr3 146870288 146870462 -12729321 + B3 SINE B2 1 206 -10 5 1705 302 257 85 102 chr3 146870462 146870646 -12729137 - L1MB8 LINE L1 -35 6149 5965 5 1705 273 119 0 0 chr3 146870674 146870716 -12729067 + (TG)n Simple_repeat Simple_repeat 1 42 0 5 1705 2801 136 154 64 chr3 146871027 146871656 -12728127 - RMER6C LTR ERVK -4 686 1 5 1705 284 333 0 0 chr3 146871666 146871756 -12728027 - L1MB8 LINE L1 -267 5917 5828 5 1705 990 220 16 31 chr3 146871766 146872024 -12727759 + MTEb LTR MaLR 126 379 0 5 1705 972 262 58 36 chr3 146872900 146873264 -12726519 - MTE2b LTR MaLR -5 374 3 5 1705 422 288 152 0 chr3 146873348 146873473 -12726310 - RSINE1 SINE B4 -19 146 3 5 1705 191 308 34 101 chr3 146873797 146873916 -12725867 - L2c LINE L2 0 3387 3277 5 1705 265 250 176 29 chr3 146874981 146875117 -12724666 + LTR48 LTR ERV1 4 159 -628 5 1705 483 250 181 0 chr3 146875603 146875763 -12724020 - MTD LTR MaLR 0 419 231 5 1705 396 174 0 0 chr3 146875763 146875832 -12723951 - URR1B DNA MER1_type 0 225 157 5 1705 1338 67 0 0 chr3 146876150 146876328 -12723455 + (GGAGAA)n Simple_repeat Simple_repeat 3 180 0 5 1705 837 119 6 12 chr3 146876344 146876506 -12723277 + (GA)n Simple_repeat Simple_repeat 2 162 0 5 1705 988 262 101 13 chr3 146877775 146878081 -12721702 + MTEb LTR MaLR 7 339 -40 5 1705 552 15 0 0 chr3 146878629 146878694 -12721089 + (TC)n Simple_repeat Simple_repeat 2 66 0 5 1705 195 42 0 0 chr3 146878694 146878717 -12721066 + (TG)n Simple_repeat Simple_repeat 1 24 0 5 1705 474 18 0 0 chr3 146878911 146878966 -12720817 + (CA)n Simple_repeat Simple_repeat 2 56 0 5 1705 2184 221 70 21 chr3 146879077 146879604 -12720179 - Lx9 LINE L1 -531 7113 6561 5 1705 1004 311 35 19 chr3 146879992 146880359 -12719424 - MTE2b LTR MaLR -6 373 1 5 1705 1175 229 76 45 chr3 146881106 146881462 -12718321 - MTEb LTR MaLR -12 367 1 5 1705 38815 29 0 0 chr3 146881907 146888390 -12711393 - L1Md_T LINE L1 0 6585 56 5 1705 528 307 113 53 chr3 146888607 146889040 -12710743 - LTR40b LTR ERVL -2 460 2 5 1705 261 262 70 70 chr3 146889171 146889257 -12710526 - B4A SINE B4 -205 87 2 5 1705 387 0 0 0 chr3 146891378 146891421 -12708362 + (TG)n Simple_repeat Simple_repeat 2 44 0 5 1705 289 355 9 9 chr3 146892436 146892544 -12707239 + B4 SINE B4 2 109 -183 5 1705 230 245 41 0 chr3 146892591 146892640 -12707143 + B4 SINE B4 238 288 -4 5 1705 234 0 0 0 chr3 146892712 146892738 -12707045 + (CA)n Simple_repeat Simple_repeat 2 27 0 5 1705 603 322 19 70 chr3 146894335 146894649 -12705134 - L3 LINE CR1 -216 4273 3976 5 1705 1172 45 0 37 chr3 146894714 146894901 -12704882 + (TTC)n Simple_repeat Simple_repeat 1 180 0 5 1705 222 118 0 0 chr3 146894901 146894935 -12704848 + (TCC)n Simple_repeat Simple_repeat 3 36 0 5 1705 492 72 0 0 chr3 146897691 146897760 -12702023 + (TC)n Simple_repeat Simple_repeat 2 70 0 5 1705 598 301 148 25 chr3 146897821 146898138 -12701645 + MTEa LTR MaLR 18 373 -6 5 1705 522 325 93 10 chr3 146898619 146898812 -12700971 + B3A SINE B2 2 210 -6 5 1705 2558 49 0 0 chr3 146898828 146899135 -12700648 - L1_Mus1 LINE L1 -3 6564 6258 5 1705 253 235 225 42 chr3 146899332 146899452 -12700331 + LTR48 LTR ERV1 1 142 -645 5 1705 222 315 53 26 chr3 146900001 146900115 -12699668 + MIR SINE MIR 78 194 -68 5 1705 231 284 25 0 chr3 146900589 146900670 -12699113 + MIRc SINE MIR 68 150 -118 5 1705 216 235 26 0 chr3 146900680 146900795 -12698988 + GA-rich Low_complexity Low_complexity 1 118 0 5 1705 304 228 0 81 chr3 146900807 146900893 -12698890 + ID4 SINE ID 2 80 -3 5 1705 607 263 67 17 chr3 146901256 146901434 -12698349 + B3A SINE B2 7 193 -5 5 1705 373 277 11 22 chr3 146901560 146901683 -12698100 + B3A SINE B2 92 216 0 5 1705 330 242 95 0 chr3 146902261 146902356 -12697427 - LTR79 LTR ERVL -32 495 392 5 1705 1796 69 104 30 chr3 146902679 146902947 -12696836 + Lx3_Mus LINE L1 6714 7001 -8 5 1705 246 62 0 0 chr3 146903341 146903373 -12696410 + (TTCA)n Simple_repeat Simple_repeat 4 35 0 5 1705 216 325 12 48 chr3 146903561 146903645 -12696138 - L2a LINE L2 -312 3114 3034 5 1705 212 154 0 0 chr3 146904493 146904532 -12695251 + (TG)n Simple_repeat Simple_repeat 2 40 0 5 1705 24 0 0 0 chr3 146906481 146906505 -12693278 + AT_rich Low_complexity Low_complexity 1 24 0 5 1705 1927 220 41 30 chr3 146906510 146907158 -12692625 - Lx6 LINE L1 -1362 6098 5427 5 1705 230 235 0 0 chr3 146907140 146907191 -12692592 - Lx6 LINE L1 -1005 4875 4825 5 1705 477 50 0 0 chr3 146908450 146908510 -12691273 + (TG)n Simple_repeat Simple_repeat 1 60 0 5 1705 224 200 15 0 chr3 146908983 146909048 -12690735 + (CA)n Simple_repeat Simple_repeat 1 66 0 5 1705 333 331 23 75 chr3 146909582 146909755 -12690028 + B4A SINE B4 3 166 -126 5 1705 796 266 117 51 chr3 146911305 146911657 -12688126 + MTE2b LTR MaLR 5 379 0 5 1705 1026 84 0 0 chr3 146912762 146912904 -12686879 + (GGAA)n Simple_repeat Simple_repeat 4 145 0 5 1705 240 295 20 31 chr3 146913113 146913211 -12686572 - L3 LINE CR1 -689 3800 3704 5 1705 371 299 28 9 chr3 146913657 146913765 -12686018 + RSINE1 SINE B4 1 110 -55 5 1705 246 116 0 0 chr3 146913837 146913880 -12685903 + (CA)n Simple_repeat Simple_repeat 2 44 0 5 1705 693 0 0 0 chr3 146914487 146914564 -12685219 + (GA)n Simple_repeat Simple_repeat 2 78 0 6 1705 243 0 0 0 chr3 146914689 146914716 -12685067 + (TG)n Simple_repeat Simple_repeat 2 28 0 6 1705 612 0 0 0 chr3 146916191 146916259 -12683524 + (TC)n Simple_repeat Simple_repeat 1 68 0 6 1705 356 267 19 9 chr3 146918155 146918261 -12681522 - B1F SINE Alu -17 132 26 6 1705 238 242 0 29 chr3 146918271 146918339 -12681444 + CT-rich Low_complexity Low_complexity 4 69 0 6 1705 612 27 0 0 chr3 146919201 146919275 -12680508 + (CA)n Simple_repeat Simple_repeat 1 74 0 6 1705 410 286 87 92 chr3 146919343 146919613 -12680170 + B4A SINE B4 17 285 -7 6 1705 319 284 12 24 chr3 146920618 146920701 -12679082 + 5S rRNA rRNA 5 86 -35 6 1705 933 101 60 7 chr3 146921523 146921673 -12678110 - L1_Mus4 LINE L1 -5 6631 6474 6 1705 689 300 69 27 chr3 146921764 146922096 -12677687 - MLT2C1 LTR ERVL -51 346 1 6 1705 1102 243 38 19 chr3 146922703 146922967 -12676816 + B4 SINE B4 2 270 -22 6 1705 336 314 157 0 chr3 146923076 146923248 -12676535 - MLT1H LTR MaLR -318 231 33 6 1705 357 24 0 0 chr3 146924414 146924456 -12675327 + (T)n Simple_repeat Simple_repeat 1 42 0 6 1705 292 242 66 0 chr3 146924869 146924960 -12674823 - Lx6 LINE L1 -4 7456 7360 6 1705 396 0 0 0 chr3 146925429 146925473 -12674310 + (CA)n Simple_repeat Simple_repeat 1 44 0 6 1705 185 312 0 13 chr3 146925518 146925677 -12674106 + (TATG)n Simple_repeat Simple_repeat 1 157 0 6 1705 441 220 0 9 chr3 146925685 146925852 -12673931 + (TG)n Simple_repeat Simple_repeat 1 165 0 6 1705 183 317 39 55 chr3 146928181 146928308 -12671475 - MIRc SINE MIR -113 155 31 6 1705 360 0 0 0 chr3 146928512 146928552 -12671231 + (CATAT)n Simple_repeat Simple_repeat 4 43 0 6 1705 200 234 47 0 chr3 146930412 146930476 -12669307 + L2 LINE L2 2584 2650 -769 6 1705 180 348 121 12 chr3 146930585 146930751 -12669032 + L2 LINE L2 2814 2997 -422 6 1705 225 338 62 25 chr3 146930918 146931079 -12668704 - L1MEc LINE L1 -5670 730 564 6 1705 1032 104 12 0 chr3 146931518 146931681 -12668102 + URR1A DNA MER1_type 62 226 0 6 1706 903 10 0 0 chr3 146932031 146932135 -12667648 + (CA)n Simple_repeat Simple_repeat 2 105 0 6 1706 607 305 75 27 chr3 146932182 146932769 -12667014 + L1MD LINE L1 4975 5596 -748 6 1706 857 259 59 0 chr3 146932851 146933071 -12666712 - MTD LTR MaLR -145 274 42 6 1706 400 318 56 0 chr3 146933727 146933853 -12665930 - RSINE1 SINE B4 -21 144 12 6 1706 306 276 39 65 chr3 146933866 146934021 -12665762 - L1MA6 LINE L1 0 6300 6150 6 1706 397 289 13 47 chr3 146934114 146934263 -12665520 - B3 SINE B2 0 216 73 6 1706 2099 190 55 8 chr3 146934880 146935278 -12664505 + MTC LTR MaLR 5 421 0 6 1706 774 31 0 0 chr3 146935490 146935587 -12664196 + (CTA)n Simple_repeat Simple_repeat 2 98 0 6 1706 256 376 7 22 chr3 146935987 146936123 -12663660 - LTR16A LTR ERVL -92 359 226 6 1706 492 297 45 50 chr3 146937045 146937247 -12662536 + MLT1A1 LTR MaLR 31 231 -177 6 1706 1006 295 41 24 chr3 146937394 146937734 -12662049 + MTE2b LTR MaLR 19 364 -15 6 1706 302 356 22 15 chr3 146937931 146938068 -12661715 - B4 SINE B4 -55 237 100 6 1706 441 0 0 0 chr3 146938354 146938403 -12661380 + (TC)n Simple_repeat Simple_repeat 1 49 0 6 1706 25 0 0 0 chr3 146939166 146939191 -12660592 + AT_rich Low_complexity Low_complexity 1 25 0 6 1706 26 50 0 0 chr3 146940168 146940208 -12659575 + AT_rich Low_complexity Low_complexity 1 40 0 6 1706 754 138 36 6 chr3 146940282 146940450 -12659333 + CT-rich Low_complexity Low_complexity 1 173 0 6 1706 264 30 0 0 chr3 146940566 146940599 -12659184 + (TG)n Simple_repeat Simple_repeat 2 34 0 6 1706 364 285 35 49 chr3 146940749 146940893 -12658890 + B1F1 SINE Alu 1 142 -7 6 1706 842 306 35 4 chr3 146940915 146941174 -12658609 + B4A SINE B4 7 273 -19 6 1706 765 49 0 0 chr3 146941218 146941320 -12658463 + (CA)n Simple_repeat Simple_repeat 2 103 0 6 1706 2995 197 24 36 chr3 146941435 146942072 -12657711 + Lx2B LINE L1 6372 7000 0 6 1706 1101 256 14 104 chr3 146942126 146942540 -12657243 + MTEa LTR MaLR 3 379 0 6 1706 377 360 11 6 chr3 146943302 146943481 -12656302 - B3A SINE B2 -18 180 1 6 1706 242 267 0 10 chr3 146944350 146944452 -12655331 + (TG)n Simple_repeat Simple_repeat 2 102 0 6 1706 201 39 0 0 chr3 146944875 146944901 -12654882 + (TAAAA)n Simple_repeat Simple_repeat 3 28 0 6 1706 517 311 96 32 chr3 146946444 146946859 -12652924 + MLT1D LTR MaLR 45 496 -9 6 1706 354 311 105 41 chr3 146947159 146947330 -12652453 - B3A SINE B2 -16 182 1 6 1706 322 320 80 0 chr3 146947666 146947791 -12651992 - MIR SINE MIR -96 166 32 6 1706 225 148 56 0 chr3 146947915 146947969 -12651814 - Lx9 LINE L1 -2 7642 7586 6 1706 247 359 13 0 chr3 146949161 146949317 -12650466 + (CA)n Simple_repeat Simple_repeat 1 158 0 6 1706 451 313 34 0 chr3 146949630 146949777 -12650006 + MLT1B LTR MaLR 238 389 -1 6 1706 193 299 14 29 chr3 146952782 146952851 -12646932 + MIR SINE MIR 118 185 -77 6 1706 375 121 0 0 chr3 146955983 146956041 -12643742 + (T)n Simple_repeat Simple_repeat 1 58 0 6 1706 486 0 0 0 chr3 146956239 146956293 -12643490 + (CA)n Simple_repeat Simple_repeat 2 55 0 6 1706 265 312 0 13 chr3 146956641 146956719 -12643064 - ID4_ SINE ID -4 79 3 6 1706 323 326 34 0 chr3 146956753 146956842 -12642941 - B1F1 SINE Alu -55 94 3 6 1706 324 319 11 0 chr3 146957269 146957360 -12642423 + GA-rich Low_complexity Low_complexity 2 93 0 6 1706 457 325 20 0 chr3 146958440 146958591 -12641192 - B4 SINE B4 0 292 139 6 1706 234 0 0 0 chr3 146958692 146958718 -12641065 + (CAT)n Simple_repeat Simple_repeat 2 27 0 6 1706 771 269 98 5 chr3 146958718 146958901 -12640882 - B3 SINE B2 -9 207 6 6 1706 222 237 136 0 chr3 146958900 146958959 -12640824 - B4A SINE B4 -224 68 2 6 1706 32 43 0 0 chr3 146959026 146959072 -12640711 + AT_rich Low_complexity Low_complexity 1 46 0 6 1706 189 296 184 6 chr3 146959072 146959235 -12640548 - MIRm SINE MIR -83 193 2 6 1706 654 189 0 0 chr3 146959825 146960000 -12639783 + (CA)n Simple_repeat Simple_repeat 2 176 0 6 1706 405 233 0 0 chr3 146960026 146960189 -12639594 + (CA)n Simple_repeat Simple_repeat 1 163 0 6 1706 683 295 121 32 chr3 146961190 146961537 -12638246 - MTE-int LTR MaLR -1195 385 8 6 1706 955 235 75 69 chr3 146961596 146961985 -12637798 + RMER1C Other Other 952 1342 0 6 1706 253 247 0 27 chr3 146962001 146962076 -12637707 + (CATATA)n Simple_repeat Simple_repeat 5 77 0 6 1706 257 327 47 97 chr3 146962076 146962354 -12637429 - MT2A LTR ERVL -40 493 230 6 1706 442 93 64 18 chr3 146962374 146962484 -12637299 + (TCTG)n Simple_repeat Simple_repeat 2 116 0 6 1706 431 298 16 16 chr3 146962546 146962669 -12637114 - MTEa LTR MaLR -256 123 1 6 1706 36390 40 1 3 chr3 146963045 146969286 -12630497 - L1Md_T LINE L1 0 6585 262 6 1706 577 330 196 22 chr3 146969288 146970012 -12629771 - HAL1 LINE L1 -460 2047 1198 6 1706 187 370 64 9 chr3 146970528 146970637 -12629146 - L2b LINE L2 -230 3145 3031 6 1706 697 317 161 45 chr3 146972532 146972955 -12626828 + MLT1D LTR MaLR 2 473 -32 6 1706 742 192 48 36 chr3 146972978 146973154 -12626629 + ORR1E LTR MaLR 3 173 -186 6 1706 271 406 0 0 chr3 146973210 146973343 -12626440 - Lx5 LINE L1 -120 6930 6798 6 1706 410 298 45 62 chr3 146973343 146973574 -12626209 + MTE2a LTR MaLR 146 379 0 6 1706 225 274 0 0 chr3 146973670 146973721 -12626062 - MIR SINE MIR -8 254 204 6 1706 371 312 104 18 chr3 146973860 146974023 -12625760 + MER5B DNA MER1_type 2 178 0 6 1706 348 148 0 0 chr3 146975284 146975345 -12624438 + (TG)n Simple_repeat Simple_repeat 1 61 0 6 1706 317 43 21 0 chr3 146975344 146975391 -12624392 + (GA)n Simple_repeat Simple_repeat 1 48 0 6 1706 201 74 0 0 chr3 146976478 146976505 -12623278 + (CAAAAA)n Simple_repeat Simple_repeat 2 28 0 6 1706 297 51 0 0 chr3 146976860 146976899 -12622884 + (TG)n Simple_repeat Simple_repeat 1 39 0 6 1706 347 312 171 37 chr3 146977925 146978141 -12621642 + LTR50 LTR ERVL 503 747 -48 6 1706 628 269 82 144 chr3 146978405 146979560 -12620223 - L1MC LINE L1 -1676 4470 3387 6 1706 384 88 0 0 chr3 146980050 146980107 -12619676 + (TG)n Simple_repeat Simple_repeat 2 58 0 6 1706 886 179 13 0 chr3 146980434 146980585 -12619198 + URR1B DNA MER1_type 3 155 -70 6 1706 499 338 158 49 chr3 146980962 146981367 -12618416 + MLT1E2 LTR MaLR 51 499 -128 6 1706 257 212 136 0 chr3 146981373 146981439 -12618344 + MLT1A1 LTR MaLR 6 80 -328 6 1706 3667 123 14 63 chr3 146981506 146982138 -12617645 + MT2B LTR ERVL 1 601 0 6 1706 299 295 96 45 chr3 146982371 146982591 -12617192 + MER97c DNA MER1_type? 25 255 -835 6 1706 298 135 77 0 chr3 146982592 146982696 -12617087 + (TA)n Simple_repeat Simple_repeat 1 112 0 6 1706 284 272 60 60 chr3 146982703 146982836 -12616947 + MER97c DNA MER1_type? 242 374 -716 6 1706 879 103 0 0 chr3 146982858 146982994 -12616789 + L1Md_A LINE L1 6447 6582 0 6 1706 22 35 0 0 chr3 146983168 146983197 -12616586 + AT_rich Low_complexity Low_complexity 1 29 0 6 1706 1994 198 26 15 chr3 146983487 146983949 -12615834 + Lx5 LINE L1 5593 6059 -991 6 1706 378 0 0 0 chr3 146983986 146984028 -12615755 + (TG)n Simple_repeat Simple_repeat 2 43 0 6 1706 756 247 7 0 chr3 146984029 146984179 -12615604 - B3A SINE B2 -39 159 9 6 1706 323 279 25 0 chr3 146985113 146985192 -12614591 - LFSINE_Vert SINE SINE -375 84 4 6 1706 315 332 132 29 chr3 146986240 146986445 -12613338 + MIRb SINE MIR 31 256 -12 6 1706 201 74 0 0 chr3 146986649 146986676 -12613107 + (TTTC)n Simple_repeat Simple_repeat 3 29 0 7 1706 611 228 260 43 chr3 146987253 146987581 -12612202 + MTD LTR MaLR 18 378 -1 7 1706 291 338 48 42 chr3 146987729 146987896 -12611887 + LTR16A LTR ERVL 231 398 -53 7 1706 584 277 11 26 chr3 146988309 146988498 -12611285 + B2_Mm2 SINE B2 1 186 -9 7 1706 744 221 0 7 chr3 146988508 146988654 -12611129 + B1_Mur2 SINE Alu 1 145 -4 7 1706 21 0 0 0 chr3 146990127 146990148 -12609635 + AT_rich Low_complexity Low_complexity 1 21 0 7 1706 10990 154 21 4 chr3 146990912 146992914 -12606869 - Lx LINE L1 -75 5808 3772 7 1706 4668 112 93 5 chr3 146992914 146993669 -12606114 + Lx LINE L1 5819 6639 -15 7 1706 275 96 0 19 chr3 146994316 146994369 -12605414 + (CA)n Simple_repeat Simple_repeat 1 52 0 7 1706 240 278 10 10 chr3 146994852 146994950 -12604833 - L1M2a LINE L1 -3321 3843 3746 7 1706 523 280 77 19 chr3 146994995 146995359 -12604424 - L1M2a LINE L1 -3550 3614 3230 7 1706 261 321 147 15 chr3 146995504 146995912 -12603871 - L1M2a LINE L1 -4209 2959 2498 7 1706 210 308 32 42 chr3 146996161 146996256 -12603527 - B3A SINE B2 -8 190 97 7 1706 677 85 25 17 chr3 146996366 146996486 -12603297 + (TTCC)n Simple_repeat Simple_repeat 4 124 0 7 1706 204 40 0 0 chr3 146996484 146996509 -12603274 + (TC)n Simple_repeat Simple_repeat 1 25 0 7 1706 283 312 30 9 chr3 146996918 146997151 -12602632 - L1M2a LINE L1 -4991 2177 1940 7 1706 444 37 0 0 chr3 146997886 146997940 -12601843 + (TG)n Simple_repeat Simple_repeat 2 55 0 7 1706 225 230 11 187 chr3 146998530 146998621 -12601162 - MIRm SINE MIR -98 178 104 7 1706 222 37 0 0 chr3 146999671 146999698 -12600085 + (TG)n Simple_repeat Simple_repeat 2 28 0 7 1706 498 360 22 38 chr3 146999721 146999906 -12599877 - B3A SINE B2 -16 182 1 7 1706 971 276 56 38 chr3 147000049 147000388 -12599395 + MLT1B LTR MaLR 42 386 -4 1 1706 358 283 279 45 chr3 147000893 147001115 -12598668 + B4A SINE B4 1 274 -18 2 1706 213 301 14 0 chr3 147001869 147001942 -12597841 + CT-rich Low_complexity Low_complexity 2 75 0 3 1706 393 22 0 0 chr3 147002796 147002842 -12596941 + (CA)n Simple_repeat Simple_repeat 1 46 0 4 1706 369 0 0 0 chr3 147002842 147002882 -12596901 + (GA)n Simple_repeat Simple_repeat 2 42 0 5 1706 549 44 0 0 chr3 147005083 147005151 -12594632 + (TTTA)n Simple_repeat Simple_repeat 4 71 0 6 1706 1174 70 0 0 chr3 147005160 147005303 -12594480 - B1_Mus1 SINE Alu -5 143 1 7 1706 333 0 0 0 chr3 147007285 147007322 -12592461 + (CA)n Simple_repeat Simple_repeat 2 38 0 8 1706 219 320 48 71 chr3 147008271 147008355 -12591428 - L2b LINE L2 -5 3370 3289 9 1706 25 0 0 0 chr3 147008983 147009008 -12590775 + AT_rich Low_complexity Low_complexity 1 25 0 1 1706 300 191 81 122 chr3 147009011 147009208 -12590575 - Lx9 LINE L1 -20 7624 7436 1 1706 378 276 187 29 chr3 147009272 147009545 -12590238 - Charlie1 DNA MER1_type -46 2735 2420 1 1706 308 375 23 0 chr3 147009625 147009753 -12590030 - Charlie1 DNA MER1_type -2648 133 3 1 1706 21 0 0 0 chr3 147012389 147012410 -12587373 + AT_rich Low_complexity Low_complexity 1 21 0 1 1706 723 286 105 85 chr3 147012460 147012819 -12586964 + MTE2b LTR MaLR 11 366 -13 1 1706 756 86 0 0 chr3 147015740 147015845 -12583938 + (TA)n Simple_repeat Simple_repeat 1 105 0 1 1706 37854 10 11 16 chr3 147019244 147020892 -12578891 - L1Md_A LINE L1 -1 6581 4928 1 1706 237 167 46 77 chr3 147020892 147020957 -12578826 + RMER20A LTR ERVK 186 248 -268 1 1706 37854 10 11 16 chr3 147020957 147025399 -12574384 - L1Md_A LINE L1 -1 4927 468 1 1706 349 318 91 0 chr3 147025823 147025933 -12573850 + B3A SINE B2 51 170 -28 1 1706 515 108 11 0 chr3 147025967 147026060 -12573723 + (TCTA)n Simple_repeat Simple_repeat 4 97 0 1 1706 638 156 9 0 chr3 147026060 147026169 -12573614 - B2_Mm1t SINE B2 -11 182 73 2 1706 1680 33 34 97 chr3 147026169 147026438 -12573345 - IAPLTR2_Mm LTR ERVK 0 475 224 2 1706 914 40 40 19 chr3 147026440 147026615 -12573168 - IAPLTR2_Mm LTR ERVK -90 385 241 2 1706 2870 34 94 5 chr3 147026615 147026998 -12572785 - IAPLTR2_Mm LTR ERVK -58 417 1 2 1706 543 198 16 79 chr3 147026998 147027074 -12572709 - B2_Mm1t SINE B2 -124 69 2 2 1706 324 313 58 44 chr3 147027214 147027448 -12572335 - ORR1E LTR MaLR -123 247 11 2 1706 296 266 34 34 chr3 147027746 147027894 -12571889 + (TATATG)n Simple_repeat Simple_repeat 2 149 0 2 1706 276 296 30 24 chr3 147027917 147028083 -12571700 + (TATG)n Simple_repeat Simple_repeat 4 170 0 2 1706 233 220 0 0 chr3 147028515 147028565 -12571218 + (TATG)n Simple_repeat Simple_repeat 4 53 0 2 1706 322 321 90 20 chr3 147028823 147029023 -12570760 + L1MC5 LINE L1 7473 7686 -275 2 1706 23 0 0 0 chr3 147029219 147029242 -12570541 + AT_rich Low_complexity Low_complexity 1 23 0 3 1706 1186 90 11 0 chr3 147029461 147029639 -12570144 + (TCCCC)n Simple_repeat Simple_repeat 1 180 0 3 1706 207 304 0 0 chr3 147029650 147029729 -12570054 + CT-rich Low_complexity Low_complexity 3 81 0 3 1706 453 366 77 51 chr3 147029890 147030304 -12569479 - MLT1E2 LTR MaLR 0 627 203 3 1706 792 165 11 89 chr3 147030306 147030486 -12569297 - URR1B DNA MER1_type -1 224 59 3 1706 366 285 76 38 chr3 147030784 147030941 -12568842 - MTEa LTR MaLR -4 375 213 3 1706 365 182 10 0 chr3 147030982 147031081 -12568702 + (TAGA)n Simple_repeat Simple_repeat 2 101 0 3 1706 611 60 12 0 chr3 147031084 147031168 -12568615 + (GA)n Simple_repeat Simple_repeat 1 85 0 3 1706 527 248 0 37 chr3 147032381 147032515 -12567268 - LTR90B LTR LTR -6 790 662 3 1706 1067 294 36 83 chr3 147032700 147033086 -12566697 + MTE2a LTR MaLR 12 379 0 3 1706 2449 97 9 0 chr3 147034295 147034645 -12565138 + L1_Mus3 LINE L1 6285 6637 -1 4 1706 1137 268 78 21 chr3 147034963 147035397 -12564386 - Lx3C LINE L1 -3 6973 6515 4 1706 8342 143 17 11 chr3 147035453 147036959 -12562824 - Lx4A LINE L1 -3 7055 5531 4 1706 3940 127 77 4 chr3 147036979 147037708 -12562075 + L1_Mur2 LINE L1 4777 5558 -319 4 1706 1005 150 0 0 chr3 147037889 147038069 -12561714 + (TC)n Simple_repeat Simple_repeat 1 180 0 4 1706 895 152 0 33 chr3 147038091 147038275 -12561508 + CT-rich Low_complexity Low_complexity 3 180 0 4 1706 949 136 0 33 chr3 147038295 147038478 -12561305 + CT-rich Low_complexity Low_complexity 4 180 0 4 1706 655 271 43 39 chr3 147039949 147040156 -12559627 - MER2 DNA MER2_type -29 316 109 4 1706 449 62 15 0 chr3 147041137 147041202 -12558581 + (TG)n Simple_repeat Simple_repeat 2 67 0 4 1706 255 31 0 0 chr3 147042000 147042032 -12557751 + (TG)n Simple_repeat Simple_repeat 1 32 0 4 1706 372 22 0 0 chr3 147042096 147042141 -12557642 + (TG)n Simple_repeat Simple_repeat 2 46 0 4 1706 22 0 0 0 chr3 147042605 147042627 -12557156 + AT_rich Low_complexity Low_complexity 1 22 0 5 1706 256 253 100 33 chr3 147044078 147044168 -12555615 + MTEb LTR MaLR 281 376 -3 5 1706 32 81 0 0 chr3 147044456 147044530 -12555253 + AT_rich Low_complexity Low_complexity 1 74 0 5 1706 304 361 27 76 chr3 147044755 147044980 -12554803 - L2a LINE L2 -103 3323 3110 5 1706 336 336 56 0 chr3 147045339 147045446 -12554337 + B3A SINE B2 1 113 -85 5 1706 480 35 0 0 chr3 147047833 147047891 -12551892 + (CA)n Simple_repeat Simple_repeat 1 58 0 5 1706 877 76 8 8 chr3 147049613 147049745 -12550038 + (GAAA)n Simple_repeat Simple_repeat 3 134 0 5 1706 554 156 0 9 chr3 147049745 147049797 -12549986 + polypurine Low_complexity Low_complexity 2 53 0 5 1706 1185 106 0 0 chr3 147049797 147049977 -12549806 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 5 1706 554 156 0 9 chr3 147049977 147050029 -12549754 + polypurine Low_complexity Low_complexity 54 105 0 5 1706 283 290 136 65 chr3 147052312 147052467 -12547316 + MER58B DNA MER1_type 174 339 -2 6 1706 434 207 11 75 chr3 147052719 147052813 -12546970 + B1_Mur2 SINE Alu 11 98 -51 6 1706 621 0 0 0 chr3 147052813 147052882 -12546901 + (GA)n Simple_repeat Simple_repeat 1 69 0 6 1706 3004 156 122 18 chr3 147053523 147053861 -12545922 + RMER6C LTR ERVK 1 385 -305 6 1706 261 0 0 0 chr3 147053861 147053890 -12545893 + (CA)n Simple_repeat Simple_repeat 2 30 0 6 1706 522 0 0 0 chr3 147053890 147053947 -12545836 + (GA)n Simple_repeat Simple_repeat 2 59 0 6 1706 3004 156 122 18 chr3 147053947 147054232 -12545551 + RMER6C LTR ERVK 386 689 -1 6 1706 840 33 25 0 chr3 147054560 147054680 -12545103 + (TG)n Simple_repeat Simple_repeat 2 124 0 6 1706 869 138 249 0 chr3 147054932 147055113 -12544670 + URR1A DNA MER1_type 1 226 0 6 1706 836 206 49 29 chr3 147055913 147056118 -12543665 - B3 SINE B2 -6 210 2 6 1706 454 306 8 22 chr3 147057063 147057470 -12542313 + CT-rich Low_complexity Low_complexity 1 401 0 6 1706 796 331 39 29 chr3 147057558 147057838 -12541945 - B4A SINE B4 -4 288 6 7 1706 745 11 21 0 chr3 147057856 147057950 -12541833 + (TC)n Simple_repeat Simple_repeat 1 96 0 7 1706 447 349 18 87 chr3 147058707 147058936 -12540847 + B3A SINE B2 4 216 0 7 1706 574 344 56 16 chr3 147060445 147060696 -12539087 + MLT1A0 LTR MaLR 103 363 -2 7 1706 288 0 0 0 chr3 147062022 147062054 -12537729 + (T)n Simple_repeat Simple_repeat 1 32 0 7 1706 3333 125 11 28 chr3 147062154 147062696 -12537087 + Lx3B LINE L1 6439 6971 -2 7 1706 27 0 0 0 chr3 147062696 147062723 -12537060 + AT_rich Low_complexity Low_complexity 1 27 0 7 1707 216 302 81 128 chr3 147063484 147063742 -12536041 + L2c LINE L2 3121 3366 -21 7 1707 644 277 35 42 chr3 147064184 147064411 -12535372 + ID_B1 SINE B4 6 225 -67 7 1707 459 299 11 58 chr3 147064859 147064894 -12534889 + ID_B1 SINE B4 58 223 -1 7 1707 644 281 0 0 chr3 147064894 147065033 -12534750 + B1_Mur1 SINE Alu 10 148 -1 8 1707 21 0 0 0 chr3 147065147 147065168 -12534615 + AT_rich Low_complexity Low_complexity 1 21 0 8 1707 522 236 73 0 chr3 147065638 147065761 -12534022 - RSINE1 SINE B4 -31 134 3 8 1707 538 82 24 0 chr3 147067596 147067681 -12532102 + (GA)n Simple_repeat Simple_repeat 2 88 0 8 1707 507 365 44 13 chr3 147068677 147068902 -12530881 + B4A SINE B4 48 279 -13 8 1707 426 174 18 9 chr3 147069028 147069138 -12530645 + GA-rich Low_complexity Low_complexity 2 112 0 8 1707 1438 17 11 0 chr3 147069139 147069316 -12530467 + (GAA)n Simple_repeat Simple_repeat 1 179 0 8 1707 360 263 127 0 chr3 147072743 147072861 -12526922 + B1_Mur1 SINE Alu 17 150 0 8 1707 303 322 139 47 chr3 147072831 147073046 -12526737 - MLT1C LTR MaLR -12 455 221 8 1707 278 290 65 0 chr3 147073954 147074047 -12525736 + MIR SINE MIR 24 122 -140 8 1707 2443 85 13 56 chr3 147074500 147074873 -12524910 - L1_Mus2 LINE L1 0 6566 6210 9 1707 684 288 54 88 chr3 147074893 147075190 -12524593 + B4A SINE B4 6 292 0 9 1707 474 18 0 0 chr3 147076960 147077015 -12522768 + (TG)n Simple_repeat Simple_repeat 2 56 0 9 1707 2489 93 35 8 chr3 147077044 147077413 -12522370 + MTA_Mm LTR MaLR 2 380 -16 9 1707 360 260 11 6 chr3 147077446 147077620 -12522163 + (TA)n Simple_repeat Simple_repeat 1 175 0 9 1707 217 299 44 15 chr3 147077741 147077809 -12521974 - B4 SINE B4 -217 75 6 9 1707 228 137 0 0 chr3 147077991 147078042 -12521741 + (T)n Simple_repeat Simple_repeat 1 51 0 9 1707 1187 48 0 27 chr3 147078042 147078192 -12521591 - B1_Mus2 SINE Alu 0 147 2 9 1707 279 0 0 0 chr3 147078387 147078418 -12521365 + (TG)n Simple_repeat Simple_repeat 2 32 0 9 1707 445 56 56 0 chr3 147078428 147078499 -12521284 + (CATA)n Simple_repeat Simple_repeat 2 76 0 9 1707 217 423 54 0 chr3 147078712 147078842 -12520941 - L2b LINE L2 0 3375 3239 1 1707 970 86 9 35 chr3 147079218 147079447 -12520336 + (TCTCTG)n Simple_repeat Simple_repeat 1 222 0 1 1707 186 171 0 0 chr3 147079448 147079489 -12520294 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 1707 228 388 19 10 chr3 147080458 147080562 -12519221 + MIRc SINE MIR 42 146 -122 1 1707 366 132 0 0 chr3 147080578 147080654 -12519129 + (TC)n Simple_repeat Simple_repeat 2 77 0 1 1707 264 311 85 35 chr3 147080715 147080975 -12518808 + L1MCc LINE L1 97 369 -6054 1 1707 713 289 26 66 chr3 147081023 147081327 -12518456 + B4A SINE B4 1 292 0 1 1707 221 352 8 8 chr3 147081327 147081453 -12518330 + (CATA)n Simple_repeat Simple_repeat 3 128 0 1 1707 314 320 122 75 chr3 147081811 147082064 -12517719 + L1MCc LINE L1 661 925 -5498 1 1707 238 304 54 42 chr3 147082154 147082322 -12517461 + L1MCc LINE L1 1036 1205 -5218 1 1707 567 0 0 0 chr3 147082359 147082422 -12517361 + (TC)n Simple_repeat Simple_repeat 2 64 0 1 1707 402 21 0 0 chr3 147082422 147082468 -12517315 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 1707 249 298 10 41 chr3 147082469 147082567 -12517216 + CT-rich Low_complexity Low_complexity 1 95 0 1 1707 931 340 90 31 chr3 147082869 147083424 -12516359 + Arthur1 DNA Tip100 500 1087 -2860 1 1707 991 291 95 28 chr3 147084689 147085014 -12514769 - MTEa LTR MaLR -11 368 22 1 1707 432 0 0 0 chr3 147085149 147085197 -12514586 + (TAAA)n Simple_repeat Simple_repeat 2 49 0 1 1707 370 355 45 34 chr3 147085370 147085635 -12514148 + L2a LINE L2 3018 3285 -141 1 1707 217 263 11 158 chr3 147085669 147085714 -12514069 - ID_B1 SINE B4 -110 114 35 1 1707 251 130 20 61 chr3 147085714 147085763 -12514020 - tRNA-Ala-GCY_ tRNA tRNA -1 74 28 1 1707 198 71 0 0 chr3 147087619 147087647 -12512136 + (T)n Simple_repeat Simple_repeat 1 28 0 1 1707 288 0 0 0 chr3 147089052 147089084 -12510699 + (CA)n Simple_repeat Simple_repeat 2 33 0 1 1707 328 290 172 31 chr3 147089104 147089232 -12510551 + 7SK RNA RNA 185 330 -1 1 1707 353 267 162 8 chr3 147089564 147089681 -12510102 + MLT1A LTR MaLR 240 374 0 1 1707 201 207 73 0 chr3 147089779 147089861 -12509922 + (TCTA)n Simple_repeat Simple_repeat 2 89 0 1 1707 2294 209 17 158 chr3 147089881 147090592 -12509191 - RMER19C LTR ERVK 0 611 1 1 1707 215 152 22 0 chr3 147090594 147090640 -12509143 + (TCTA)n Simple_repeat Simple_repeat 2 48 0 1 1707 1008 32 0 0 chr3 147091713 147091837 -12507946 + (GA)n Simple_repeat Simple_repeat 2 125 0 1 1707 22 0 0 0 chr3 147093472 147093494 -12506289 + AT_rich Low_complexity Low_complexity 1 22 0 1 1707 1029 254 56 68 chr3 147093517 147093544 -12506239 - MTE2a LTR MaLR -3 376 350 1 1707 323 23 23 0 chr3 147093544 147093588 -12506195 + (CAAAA)n Simple_repeat Simple_repeat 2 46 0 1 1707 1029 260 58 70 chr3 147093588 147093917 -12505866 - MTE2a LTR MaLR -43 376 54 1 1707 26 0 0 0 chr3 147094649 147094675 -12505108 + AT_rich Low_complexity Low_complexity 1 26 0 1 1707 249 109 0 0 chr3 147094825 147094871 -12504912 + (CATA)n Simple_repeat Simple_repeat 2 47 0 1 1707 1133 266 216 11 chr3 147095121 147095467 -12504316 + MTD LTR MaLR 1 417 -2 1 1707 224 324 14 0 chr3 147095475 147095546 -12504237 - L2a LINE L2 0 3426 3355 1 1707 305 213 0 47 chr3 147096361 147096425 -12503358 + RLTR31_Mur LTR ERVK 1 61 -492 1 1707 1174 211 29 157 chr3 147096405 147096788 -12502995 + RLTR31_Mur LTR ERVK 174 507 -46 1 1707 471 35 0 0 chr3 147096789 147096846 -12502937 + (TG)n Simple_repeat Simple_repeat 2 58 0 1 1707 324 0 0 0 chr3 147097222 147097258 -12502525 + (TG)n Simple_repeat Simple_repeat 2 37 0 1 1707 1118 24 42 0 chr3 147097791 147097957 -12501826 + (TCTA)n Simple_repeat Simple_repeat 2 174 0 1 1707 3293 183 32 2 chr3 147099581 147100441 -12499342 - Lx5 LINE L1 -690 6360 5454 1 1707 3004 216 72 12 chr3 147100443 147101123 -12498660 + Lx5 LINE L1 6330 7050 0 1 1707 228 259 0 45 chr3 147101981 147102070 -12497713 - MLT1A1 LTR MaLR 0 408 324 1 1707 2389 225 112 14 chr3 147102283 147103013 -12496770 - Lx9 LINE L1 -11 7633 6832 1 1707 33 25 0 0 chr3 147103158 147103198 -12496585 + AT_rich Low_complexity Low_complexity 1 40 0 1 1707 219 154 68 8 chr3 147103203 147103321 -12496462 + (TA)n Simple_repeat Simple_repeat 2 126 0 1 1707 269 374 80 0 chr3 147103961 147104124 -12495659 + L2 LINE L2 2104 2279 -1140 1 1707 183 329 131 31 chr3 147104454 147104683 -12495100 + L2 LINE L2 2819 3070 -349 1 1707 435 63 0 0 chr3 147104982 147105045 -12494738 + (CA)n Simple_repeat Simple_repeat 2 64 0 1 1707 354 18 55 0 chr3 147105060 147105115 -12494668 + (GA)n Simple_repeat Simple_repeat 2 59 0 1 1707 28 29 0 0 chr3 147105832 147105867 -12493916 + AT_rich Low_complexity Low_complexity 1 35 0 1 1707 624 170 0 0 chr3 147106533 147106692 -12493091 + (TG)n Simple_repeat Simple_repeat 2 160 0 1 1707 279 0 0 0 chr3 147106912 147106943 -12492840 + (TC)n Simple_repeat Simple_repeat 1 31 0 1 1707 327 25 0 0 chr3 147106956 147106996 -12492787 + (CA)n Simple_repeat Simple_repeat 1 40 0 1 1707 239 29 0 54 chr3 147107656 147107693 -12492090 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1 1707 180 0 0 0 chr3 147108010 147108030 -12491753 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 1 1707 708 206 38 59 chr3 147109456 147109642 -12490141 - B3A SINE B2 -8 190 9 1 1707 22 0 0 0 chr3 147110890 147110912 -12488871 + AT_rich Low_complexity Low_complexity 1 22 0 1 1707 2116 162 76 18 chr3 147111300 147111696 -12488087 + Lx4B LINE L1 6640 7058 0 1 1707 321 297 35 88 chr3 147111781 147111812 -12487971 - B2_Mm2 SINE B2 -7 188 155 1 1707 444 67 0 0 chr3 147111812 147111872 -12487911 + (TG)n Simple_repeat Simple_repeat 1 60 0 1 1707 509 297 35 88 chr3 147111872 147112010 -12487773 - B3 SINE B2 -51 165 28 1 1707 242 250 0 45 chr3 147112086 147112153 -12487630 + (TATATG)n Simple_repeat Simple_repeat 4 67 0 1 1707 258 30 0 0 chr3 147112405 147112431 -12487352 + (GAA)n Simple_repeat Simple_repeat 1 26 0 1 1707 1212 101 0 0 chr3 147112431 147112609 -12487174 + (GGAGAA)n Simple_repeat Simple_repeat 3 180 0 1 1707 258 30 0 0 chr3 147112609 147112615 -12487168 + (GAA)n Simple_repeat Simple_repeat 3 8 0 1 1707 488 16 16 0 chr3 147113455 147113516 -12486267 + (TC)n Simple_repeat Simple_repeat 1 62 0 1 1707 662 323 0 25 chr3 147113710 147113910 -12485873 - B3A SINE B2 -3 195 1 1 1707 1574 172 17 7 chr3 147114397 147114684 -12485099 - Lx4B LINE L1 -319 6739 6450 1 1707 1253 201 43 11 chr3 147114685 147114961 -12484822 + Lx4B LINE L1 6773 7057 -1 1 1707 219 177 12 81 chr3 147116648 147116734 -12483049 + A-rich Low_complexity Low_complexity 2 81 0 1 1707 204 158 0 0 chr3 147119595 147119633 -12480150 + A-rich Low_complexity Low_complexity 1 38 0 1 1707 817 270 61 43 chr3 147119690 147119969 -12479814 + B4 SINE B4 3 286 -6 1 1707 1127 84 6 0 chr3 147120012 147120190 -12479593 + (CA)n Simple_repeat Simple_repeat 2 180 0 1 1707 763 302 134 7 chr3 147122006 147122283 -12477500 + LFSINE_Vert SINE SINE 58 369 -90 1 1707 25 31 0 0 chr3 147123677 147123709 -12476074 + AT_rich Low_complexity Low_complexity 1 32 0 1 1707 898 301 86 26 chr3 147124262 147124719 -12475064 + MLT1E2 LTR MaLR 141 618 -6 1 1707 405 366 30 96 chr3 147125056 147125419 -12474364 + ORR1E LTR MaLR 1 339 -20 1 1707 22 0 0 0 chr3 147125424 147125446 -12474337 + AT_rich Low_complexity Low_complexity 1 22 0 1 1707 719 243 0 0 chr3 147125454 147125594 -12474189 - B1_Mur2 SINE Alu -1 148 9 1 1707 255 79 0 0 chr3 147125962 147126000 -12473783 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 1 1707 1104 55 7 0 chr3 147126000 147126136 -12473647 - B1_Mus1 SINE Alu -8 140 4 1 1707 227 329 0 0 chr3 147126765 147126838 -12472945 + MamRep137 DNA TcMar? 372 444 0 1 1707 549 0 0 0 chr3 147127744 147127805 -12471978 + (TG)n Simple_repeat Simple_repeat 2 62 0 1 1707 522 0 0 0 chr3 147127807 147127865 -12471918 + (GA)n Simple_repeat Simple_repeat 1 58 0 1 1707 261 0 0 0 chr3 147128874 147128903 -12470880 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1 1707 1696 164 0 184 chr3 147129639 147130140 -12469643 - RMER17C LTR ERVK 0 410 2 1 1707 2202 144 12 65 chr3 147130237 147130653 -12469130 - ORR1B1 LTR MaLR 0 394 1 1 1707 4216 61 0 0 chr3 147130817 147131345 -12468438 - L1Md_F3 LINE L1 0 6584 6057 1 1707 5743 36 21 2 chr3 147131345 147132215 -12467568 + L1Md_F3 LINE L1 5147 6025 -559 1 1707 246 361 25 25 chr3 147132362 147132484 -12467299 + MIRb SINE MIR 38 159 -109 1 1707 1093 308 118 31 chr3 147133164 147133972 -12465811 - L1MC1 LINE L1 -24 6484 5607 1 1707 7597 139 22 23 chr3 147134123 147134381 -12465402 - L1_Mur2 LINE L1 -1019 4858 4626 1 1707 326 23 0 23 chr3 147134381 147134425 -12465358 + (TGG)n Simple_repeat Simple_repeat 3 45 0 1 1707 7597 139 22 23 chr3 147134425 147135511 -12464272 - L1_Mur2 LINE L1 -1252 4625 3516 1 1707 312 217 141 28 chr3 147135491 147135633 -12464150 - L1MC1 LINE L1 -908 5413 5256 1 1707 783 294 103 12 chr3 147135867 147136458 -12463325 - L1MC1 LINE L1 -1252 5069 4425 1 1707 2453 263 90 11 chr3 147136732 147137786 -12461997 - L1MC1 LINE L1 -2544 3777 2641 1 1707 546 75 0 0 chr3 147137813 147137893 -12461890 + (TC)n Simple_repeat Simple_repeat 1 80 0 1 1707 301 330 40 101 chr3 147137951 147138298 -12461485 - L1MC1 LINE L1 -4224 2284 1959 1 1707 530 280 88 53 chr3 147138300 147138526 -12461257 - Tigger7 DNA MER2_type -1 2490 2258 1 1707 689 319 54 4 chr3 147138543 147138801 -12460982 - Tigger7 DNA MER2_type -2026 465 195 1 1707 303 254 56 0 chr3 147138847 147138973 -12460810 - L1MC1 LINE L1 -4600 1908 1776 1 1707 365 248 78 60 chr3 147139003 147139119 -12460664 - B1F SINE Alu -2 147 30 1 1707 2219 123 3 0 chr3 147139147 147139473 -12460310 - ORR1A2 LTR MaLR 0 327 1 1 1707 274 252 60 52 chr3 147139576 147139710 -12460073 - L1MC1 LINE L1 -4885 1623 1489 1 1707 3738 67 0 20 chr3 147141751 147142250 -12457533 + L1Md_F2 LINE L1 6081 6569 -13 1 1707 326 330 94 20 chr3 147143455 147143656 -12456127 - MIR SINE MIR 0 262 47 1 1707 335 261 126 63 chr3 147144191 147144318 -12455465 + MLT1A1 LTR MaLR 43 177 -231 1 1707 247 297 60 51 chr3 147144354 147144471 -12455312 + MLT1A1 LTR MaLR 325 442 -25 1 1707 1516 291 91 10 chr3 147144643 147145534 -12454249 + Lx6 LINE L1 6227 7452 -8 1 1707 318 302 90 47 chr3 147145801 147146013 -12453770 - L1M5 LINE L1 -318 5806 5586 1 1707 193 286 45 45 chr3 147147434 147147500 -12452283 + L2 LINE L2 2679 2744 -675 1 1707 1393 57 17 0 chr3 147147504 147147681 -12452102 + L1_Mur1 LINE L1 5389 5568 -318 1 1707 505 266 9 26 chr3 147147810 147147926 -12451857 - RSINE1 SINE B4 -33 132 19 1 1707 5264 78 20 6 chr3 147147957 147148907 -12450876 + Lx3_Mus LINE L1 5412 6371 -638 1 1707 6698 180 95 3 chr3 147148884 147150478 -12449305 - Lx5 LINE L1 -1067 5983 4213 1 1707 3509 120 12 14 chr3 147150512 147151087 -12448696 - MusHAL1 LINE L1 -1355 1357 784 1 1707 15854 171 13 7 chr3 147151086 147154914 -12444869 + Lx2 LINE L1 2802 6651 -346 2 1707 1619 136 30 4 chr3 147154910 147155175 -12444608 + Lx3_Mus LINE L1 6380 6651 -3 1 1707 12398 181 71 38 chr3 147155311 147156554 -12443229 - L1_Mur2 LINE L1 -1647 4230 2966 2 1707 267 31 0 0 chr3 147156554 147156586 -12443197 + (TCC)n Simple_repeat Simple_repeat 3 34 0 2 1707 328 127 0 68 chr3 147156594 147156653 -12443130 - ORR1C2 LTR MaLR -58 326 272 2 1707 12398 181 71 38 chr3 147156653 147156668 -12443115 - L1_Mur2 LINE L1 -2912 2962 2957 2 1707 2861 94 22 0 chr3 147156668 147157070 -12442713 - Lx3_Mus LINE L1 -3 7006 6596 2 1707 12398 181 71 38 chr3 147157070 147158640 -12441143 - L1_Mur2 LINE L1 -2921 2956 1237 2 1707 792 310 92 37 chr3 147160846 147161225 -12438558 + MTD LTR MaLR 6 405 -14 2 1707 270 0 0 0 chr3 147161277 147161307 -12438476 + (CA)n Simple_repeat Simple_repeat 1 30 0 2 1707 336 24 0 0 chr3 147161307 147161347 -12438436 + (GA)n Simple_repeat Simple_repeat 2 42 0 2 1707 278 132 19 0 chr3 147162672 147162725 -12437058 + GA-rich Low_complexity Low_complexity 2 55 0 2 1707 1109 58 0 0 chr3 147163004 147163142 -12436641 - B1_Mus1 SINE Alu -9 139 2 2 1707 300 27 0 0 chr3 147163288 147163325 -12436458 + (TG)n Simple_repeat Simple_repeat 2 38 0 2 1707 365 284 81 91 chr3 147163504 147163869 -12435914 + L1MD LINE L1 3995 4365 -1781 2 1707 588 341 168 42 chr3 147165716 147166341 -12433442 - MLT1J-int LTR MaLR -339 1048 346 2 1707 855 103 14 7 chr3 147166987 147167134 -12432649 + (TCC)n Simple_repeat Simple_repeat 2 149 0 2 1707 310 291 23 11 chr3 147167663 147167750 -12432033 - MIR3 SINE MIR -3 205 118 2 1707 225 167 0 0 chr3 147167955 147168009 -12431774 + CT-rich Low_complexity Low_complexity 1 54 0 2 1707 546 16 0 0 chr3 147168009 147168072 -12431711 + (TG)n Simple_repeat Simple_repeat 2 64 0 2 1707 388 333 131 16 chr3 147168099 147168282 -12431501 - B4A SINE B4 -85 207 4 2 1707 4999 88 4 1 chr3 147168609 147169288 -12430495 + L1_Mus3 LINE L1 5958 6638 0 2 1707 602 343 51 23 chr3 147171959 147172216 -12427567 - MER45C DNA Tip100 -686 267 4 2 1707 579 53 0 0 chr3 147172306 147172381 -12427402 + (CA)n Simple_repeat Simple_repeat 1 75 0 2 1707 2175 135 278 48 chr3 147172487 147172754 -12427029 - RMER6C LTR ERVK 0 690 378 2 1707 468 0 0 0 chr3 147172754 147172806 -12426977 + (TC)n Simple_repeat Simple_repeat 1 52 0 2 1707 2175 135 278 48 chr3 147172806 147173099 -12426684 - RMER6C LTR ERVK -313 377 1 2 1707 32 0 0 0 chr3 147173654 147173686 -12426097 + AT_rich Low_complexity Low_complexity 1 32 0 2 1707 3736 103 19 4 chr3 147174227 147174762 -12425021 + L1_Mus4 LINE L1 6084 6626 -10 2 1707 22 0 0 0 chr3 147174762 147174784 -12424999 + AT_rich Low_complexity Low_complexity 1 22 0 2 1707 219 308 98 112 chr3 147175987 147176283 -12423500 - B4 SINE B4 0 292 1 2 1707 309 330 83 0 chr3 147176289 147176398 -12423385 - PB1D7 SINE Alu -1 119 2 2 1707 188 86 29 0 chr3 147177506 147177541 -12422242 + (TA)n Simple_repeat Simple_repeat 2 37 0 2 1707 226 219 0 0 chr3 147177541 147177582 -12422201 + (CA)n Simple_repeat Simple_repeat 1 41 0 2 1707 22 0 0 0 chr3 147179189 147179211 -12420572 + AT_rich Low_complexity Low_complexity 1 22 0 2 1707 791 259 138 54 chr3 147179925 147180259 -12419524 + MTE2b LTR MaLR 7 368 -11 2 1707 382 340 23 70 chr3 147181505 147181676 -12418107 + RSINE1 SINE B4 3 165 0 2 1707 282 293 0 44 chr3 147183066 147183248 -12416535 + (TTCA)n Simple_repeat Simple_repeat 3 176 0 2 1707 14871 104 12 27 chr3 147183277 147184952 -12414831 - L1VL4 LINE L1 -1895 3991 2328 2 1707 4667 165 24 12 chr3 147184952 147185775 -12414008 + Lx LINE L1 5816 6648 -6 2 1707 14871 100 13 30 chr3 147185775 147187388 -12412395 - L1VL4 LINE L1 -1587 2327 755 2 1707 189 0 0 0 chr3 147187913 147187934 -12411849 + (CAAAC)n Simple_repeat Simple_repeat 2 22 0 2 1707 660 234 0 7 chr3 147187956 147188087 -12411696 + B1_Mur3 SINE Alu 12 141 -8 2 1707 291 54 0 0 chr3 147188087 147188124 -12411659 + (CAACC)n Simple_repeat Simple_repeat 2 38 0 2 1707 263 257 108 0 chr3 147189579 147189653 -12410130 + MIR SINE MIR 52 133 -129 2 1707 2149 136 15 3 chr3 147191793 147192132 -12407651 + ORR1B1 LTR MaLR 52 394 0 2 1707 533 15 0 15 chr3 147193525 147193592 -12406191 + (TC)n Simple_repeat Simple_repeat 2 67 0 2 1707 270 0 0 0 chr3 147193592 147193621 -12406162 + (TG)n Simple_repeat Simple_repeat 1 30 0 2 1707 456 19 0 0 chr3 147193621 147193673 -12406110 + (GA)n Simple_repeat Simple_repeat 1 53 0 2 1708 431 219 84 168 chr3 147196105 147196308 -12403475 + ID_B1 SINE B4 5 190 -34 2 1708 188 328 133 36 chr3 147196321 147196599 -12403184 - L2 LINE L2 -1269 2150 1846 2 1708 22 0 0 0 chr3 147197805 147197827 -12401956 + AT_rich Low_complexity Low_complexity 1 22 0 2 1708 247 193 0 0 chr3 147198316 147198373 -12401410 + T-rich Low_complexity Low_complexity 1 57 0 2 1708 461 349 83 39 chr3 147198875 147199284 -12400499 + HAL1 LINE L1 1241 1667 -840 2 1708 519 138 0 0 chr3 147199348 147199435 -12400348 + (TTTA)n Simple_repeat Simple_repeat 4 90 0 2 1708 256 343 28 35 chr3 147199689 147199834 -12399949 + Lx8 LINE L1 7079 7222 -251 2 1708 449 296 64 48 chr3 147199834 147200022 -12399761 - MTD LTR MaLR -211 208 18 2 1708 334 337 74 60 chr3 147200184 147200534 -12399249 + L1M4 LINE L1 5275 5629 -545 2 1708 296 316 55 101 chr3 147200611 147200829 -12398954 + MLT1D LTR MaLR 1 208 -297 2 1708 245 323 30 68 chr3 147200916 147201049 -12398734 + MLT1D LTR MaLR 374 501 -4 2 1708 1172 144 85 19 chr3 147201109 147201321 -12398462 + URR1A DNA MER1_type 1 226 0 2 1708 245 332 46 53 chr3 147202472 147202637 -12397146 - B3A SINE B2 -6 210 51 2 1708 301 329 108 36 chr3 147203600 147203767 -12396016 - MIR SINE MIR 0 262 84 2 1708 464 273 49 8 chr3 147204527 147204649 -12395134 - B1F1 SINE Alu -5 144 18 2 1708 23 33 0 0 chr3 147204672 147204702 -12395081 + AT_rich Low_complexity Low_complexity 1 30 0 2 1708 4488 32 0 2 chr3 147204702 147205228 -12394555 - L1Md_T LINE L1 -1 6581 6057 2 1708 186 133 0 0 chr3 147205703 147205733 -12394050 + (CAT)n Simple_repeat Simple_repeat 2 31 0 2 1708 24 0 0 0 chr3 147207076 147207100 -12392683 + AT_rich Low_complexity Low_complexity 1 24 0 2 1708 266 375 10 68 chr3 147208355 147208561 -12391222 - MIRc SINE MIR -12 256 63 2 1708 222 171 0 0 chr3 147208589 147208630 -12391153 + (CAA)n Simple_repeat Simple_repeat 1 41 0 2 1708 210 37 0 0 chr3 147208627 147208654 -12391129 + (CA)n Simple_repeat Simple_repeat 2 28 0 2 1708 875 109 0 0 chr3 147210408 147210545 -12389238 + L1_Mus2 LINE L1 6430 6566 0 2 1708 1471 69 0 5 chr3 147210629 147210818 -12388965 - B2_Mm2 SINE B2 -6 189 2 2 1708 864 55 0 0 chr3 147211229 147211339 -12388444 + (GAA)n Simple_repeat Simple_repeat 2 111 0 2 1708 969 127 0 0 chr3 147211759 147211893 -12387890 + B1_Mus1 SINE Alu 2 135 -13 2 1708 704 33 11 0 chr3 147211893 147211984 -12387799 + (TAGA)n Simple_repeat Simple_repeat 4 95 0 2 1708 840 61 15 0 chr3 147212307 147212438 -12387345 - L1Md_F2 LINE L1 -1 6581 6449 2 1708 320 349 125 41 chr3 147212538 147212953 -12386830 + L2 LINE L2 2552 3001 -418 2 1708 207 0 0 0 chr3 147213221 147213244 -12386539 + (TTTG)n Simple_repeat Simple_repeat 1 23 0 2 1708 699 242 95 10 chr3 147213626 147213826 -12385957 + MTD LTR MaLR 1 217 -202 2 1708 1637 249 55 10 chr3 147213828 147214246 -12385537 - RLTR11A2 LTR ERVK -90 437 1 2 1708 3522 222 57 52 chr3 147214247 147215399 -12384384 - MYSERV-int LTR ERVK -2 6548 5391 2 1708 592 187 150 7 chr3 147215472 147215612 -12384171 + MTD LTR MaLR 244 403 -16 2 1708 25 0 0 0 chr3 147215873 147215898 -12383885 + AT_rich Low_complexity Low_complexity 1 25 0 2 1708 682 47 0 0 chr3 147215898 147215984 -12383799 + B1_Mus2 SINE Alu 61 146 -1 2 1708 572 246 30 17 chr3 147215991 147216227 -12383556 - Lx9 LINE L1 -22 7622 7384 2 1708 335 326 22 22 chr3 147216515 147216653 -12383130 - RMER12 LTR ERVK -466 856 719 2 1708 187 306 65 0 chr3 147217227 147217289 -12382494 - MIRc SINE MIR -38 230 165 2 1708 333 0 0 0 chr3 147217919 147217956 -12381827 + (T)n Simple_repeat Simple_repeat 1 37 0 2 1708 4376 20 0 0 chr3 147218860 147219353 -12380430 - MT2_Mm LTR ERVL 0 493 1 2 1708 302 0 0 0 chr3 147219353 147219391 -12380392 - MERVL-int LTR ERVL 0 5485 5448 2 1708 390 167 46 35 chr3 147219391 147219478 -12380305 - ORR1A3-int LTR MaLR -1323 640 553 2 1708 32774 13 6 0 chr3 147219478 147224804 -12374979 - MERVL-int LTR ERVL -125 5360 1 2 1708 4359 20 0 0 chr3 147224804 147225297 -12374486 - MT2_Mm LTR ERVL 0 493 1 2 1708 3773 178 34 7 chr3 147225306 147226053 -12373730 - Lx2B LINE L1 -13 6987 6221 2 1708 3543 163 10 44 chr3 147226057 147226603 -12373180 - L1_Mur2 LINE L1 0 5877 5353 2 1708 4647 78 7 0 chr3 147226603 147227216 -12372567 - L1_Mus2 LINE L1 -1 6565 5949 2 1708 3543 163 10 44 chr3 147227216 147227357 -12372426 - L1_Mur2 LINE L1 -525 5352 5213 2 1708 328 305 116 55 chr3 147227989 147228393 -12371390 + L1MEb LINE L1 739 1167 -5033 2 1708 457 233 55 36 chr3 147228524 147228718 -12371065 - MTD LTR MaLR -1 418 185 2 1708 755 310 123 13 chr3 147228720 147229021 -12370762 - MTD LTR MaLR -38 381 48 2 1708 457 139 19 0 chr3 147229133 147229241 -12370542 + (TCTA)n Simple_repeat Simple_repeat 1 110 0 2 1708 483 100 0 0 chr3 147230408 147230478 -12369305 + (TAGA)n Simple_repeat Simple_repeat 4 73 0 2 1708 270 0 0 0 chr3 147230478 147230508 -12369275 + (TA)n Simple_repeat Simple_repeat 1 30 0 2 1708 207 173 0 0 chr3 147230513 147230565 -12369218 + CT-rich Low_complexity Low_complexity 1 52 0 2 1708 252 0 0 0 chr3 147230566 147230594 -12369189 + (TG)n Simple_repeat Simple_repeat 2 29 0 2 1708 252 0 0 0 chr3 147230594 147230621 -12369162 + (TA)n Simple_repeat Simple_repeat 1 28 0 2 1708 294 29 0 0 chr3 147230626 147230661 -12369122 + (GA)n Simple_repeat Simple_repeat 2 36 0 2 1708 541 204 0 29 chr3 147231341 147231513 -12368270 + (CA)n Simple_repeat Simple_repeat 2 168 0 2 1708 326 196 0 38 chr3 147231528 147231634 -12368149 + (CA)n Simple_repeat Simple_repeat 1 102 0 2 1708 511 195 0 44 chr3 147231649 147232023 -12367760 + (CA)n Simple_repeat Simple_repeat 1 357 0 2 1708 235 191 0 21 chr3 147232024 147232072 -12367711 + (TA)n Simple_repeat Simple_repeat 2 48 0 2 1708 369 0 0 0 chr3 147233686 147233727 -12366056 + (CA)n Simple_repeat Simple_repeat 2 42 0 2 1708 393 161 0 0 chr3 147234116 147234203 -12365580 + (TATATG)n Simple_repeat Simple_repeat 4 90 0 2 1708 691 83 9 9 chr3 147234222 147234331 -12365452 + (TG)n Simple_repeat Simple_repeat 2 110 0 3 1708 478 239 131 0 chr3 147234334 147234464 -12365319 + B1_Mur2 SINE Alu 2 148 -1 3 1708 13263 45 0 0 chr3 147235651 147237270 -12362513 - L1_Mm LINE L1 -213 5670 4052 3 1708 4147 55 2 0 chr3 147237270 147237794 -12361989 + L1Md_F3 LINE L1 6046 6570 -14 3 1708 189 264 0 54 chr3 147238142 147238198 -12361585 + L2c LINE L2 3320 3372 -15 3 1708 21 0 0 0 chr3 147239500 147239521 -12360262 + AT_rich Low_complexity Low_complexity 1 21 0 3 1708 189 0 0 0 chr3 147240049 147240070 -12359713 + (CAAA)n Simple_repeat Simple_repeat 4 24 0 3 1708 524 331 25 64 chr3 147240954 147241235 -12358548 - B4A SINE B4 -21 271 2 3 1708 952 236 101 50 chr3 147241564 147242011 -12357772 + RLTR20C LTR ERVK 1 578 0 3 1708 23 33 0 0 chr3 147242551 147242581 -12357202 + AT_rich Low_complexity Low_complexity 1 30 0 3 1708 372 335 32 46 chr3 147242581 147242797 -12356986 - ID_B1 SINE B4 -7 217 5 3 1708 351 0 0 0 chr3 147243150 147243189 -12356594 + (TG)n Simple_repeat Simple_repeat 1 39 0 3 1708 216 0 0 0 chr3 147243516 147243540 -12356243 + (TCTG)n Simple_repeat Simple_repeat 1 24 0 3 1708 703 139 16 0 chr3 147243544 147243673 -12356110 + CT-rich Low_complexity Low_complexity 2 132 0 3 1708 226 363 19 19 chr3 147243673 147243777 -12356006 - B1F2 SINE Alu 0 149 46 3 1708 3341 114 4 9 chr3 147243777 147244306 -12355477 - L1_Mm LINE L1 -1902 3981 3456 3 1708 7533 75 0 6 chr3 147244306 147245291 -12354492 + L1_Mus1 LINE L1 5588 6566 -1 3 1708 287 104 0 20 chr3 147245310 147245359 -12354424 + (GAAAA)n Simple_repeat Simple_repeat 3 50 0 3 1708 211 151 36 36 chr3 147245552 147245607 -12354176 + (CAAA)n Simple_repeat Simple_repeat 2 56 0 3 1708 229 263 0 66 chr3 147245889 147246056 -12353727 + (TTCA)n Simple_repeat Simple_repeat 3 158 0 3 1708 1125 49 0 0 chr3 147246155 147246297 -12353486 - B1_Mus1 SINE Alu 0 148 7 3 1708 1352 71 22 0 chr3 147248011 147248193 -12351590 - B2_Mm2 SINE B2 -8 187 2 3 1708 210 143 0 0 chr3 147248575 147248610 -12351173 + (TG)n Simple_repeat Simple_repeat 2 36 0 3 1708 323 356 39 59 chr3 147248823 147249026 -12350757 - L2c LINE L2 -5 3382 3184 3 1708 254 165 39 0 chr3 147249718 147249821 -12349962 + (TA)n Simple_repeat Simple_repeat 1 107 0 3 1708 270 0 0 0 chr3 147249950 147249980 -12349803 + (TC)n Simple_repeat Simple_repeat 2 31 0 3 1708 216 122 0 0 chr3 147249980 147250020 -12349763 + (TA)n Simple_repeat Simple_repeat 2 42 0 3 1708 229 242 192 15 chr3 147250182 147250312 -12349471 - Charlie7 DNA MER1_type -1356 1256 1104 3 1708 326 261 30 22 chr3 147250720 147250877 -12348906 + L1MEc LINE L1 2305 2467 -3852 3 1708 196 232 130 0 chr3 147251472 147251541 -12348242 + MIRc SINE MIR 80 157 -111 3 1708 612 0 0 0 chr3 147252634 147252702 -12347081 + (GA)n Simple_repeat Simple_repeat 1 68 0 3 1708 312 83 0 0 chr3 147253263 147253311 -12346472 + (TG)n Simple_repeat Simple_repeat 1 48 0 3 1708 1185 289 75 16 chr3 147253541 147253927 -12345856 - MTD LTR MaLR -10 409 1 3 1708 759 248 99 0 chr3 147254365 147254526 -12345257 + B3 SINE B2 28 204 -12 3 1708 384 71 0 0 chr3 147254529 147254585 -12345198 + (CATA)n Simple_repeat Simple_repeat 2 57 0 3 1708 759 260 97 125 chr3 147255808 147256191 -12343592 + MTE2b LTR MaLR 1 372 -7 3 1708 745 244 99 53 chr3 147256454 147256697 -12343086 + Lx5 LINE L1 6797 7050 0 3 1708 404 37 19 0 chr3 147257094 147257148 -12342635 + (TG)n Simple_repeat Simple_repeat 2 56 0 3 1708 3748 163 89 26 chr3 147257441 147258196 -12341587 - Lx LINE L1 -2 6652 5851 3 1708 280 275 349 30 chr3 147259067 147259199 -12340584 - B3A SINE B2 -23 175 2 3 1708 27 0 0 0 chr3 147259502 147259529 -12340254 + AT_rich Low_complexity Low_complexity 1 27 0 3 1708 242 240 28 19 chr3 147259707 147259813 -12339970 + (TTAA)n Simple_repeat Simple_repeat 2 108 0 3 1708 728 341 30 68 chr3 147260934 147261362 -12338421 - LTR40b LTR ERVL -1 461 50 3 1708 390 314 31 25 chr3 147261745 147261905 -12337878 + RSINE1 SINE B4 2 162 -3 3 1708 405 0 0 0 chr3 147261912 147261957 -12337826 + (CA)n Simple_repeat Simple_repeat 2 46 0 3 1708 7515 114 14 4 chr3 147261970 147263724 -12336059 + L1_Mus3 LINE L1 4860 6633 -5 3 1708 956 102 11 3 chr3 147263737 147263941 -12335842 - ORR1A2 LTR MaLR 0 346 122 3 1708 727 75 19 0 chr3 147263861 147263968 -12335815 + B1_Mus2 SINE Alu 33 141 -6 3 1708 235 49 49 0 chr3 147263971 147264012 -12335771 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 3 1708 1082 185 69 27 chr3 147264015 147264276 -12335507 - ORR1B1 LTR MaLR -122 272 1 3 1708 458 152 35 26 chr3 147265017 147265132 -12334651 + Lx2B LINE L1 6885 7000 0 3 1708 208 241 0 0 chr3 147265386 147265444 -12334339 + T-rich Low_complexity Low_complexity 1 58 0 3 1708 477 247 0 46 chr3 147265445 147265598 -12334185 - B1_Mur3 SINE Alu -2 147 14 3 1708 251 263 0 0 chr3 147266843 147266900 -12332883 + L1M5 LINE L1 5182 5238 -908 3 1708 1422 56 0 6 chr3 147267306 147267485 -12332298 - B2_Mm2 SINE B2 -16 179 2 3 1708 5291 60 16 7 chr3 147267811 147268505 -12331278 - L1Md_F2 LINE L1 -2 6580 5881 3 1708 225 0 0 0 chr3 147268856 147268881 -12330902 + (TG)n Simple_repeat Simple_repeat 2 26 0 3 1708 21 0 0 0 chr3 147271325 147271346 -12328437 + AT_rich Low_complexity Low_complexity 1 21 0 3 1708 598 216 211 23 chr3 147272059 147272234 -12327549 - MTE2a LTR MaLR 0 379 172 3 1708 344 261 8 87 chr3 147272271 147272397 -12327386 - PB1D9 SINE Alu -4 116 1 3 1708 26 0 0 0 chr3 147272414 147272440 -12327343 + AT_rich Low_complexity Low_complexity 1 26 0 3 1708 499 322 34 0 chr3 147272452 147272629 -12327154 - B3A SINE B2 -15 183 1 3 1708 352 145 42 28 chr3 147272638 147272709 -12327074 - MTE2a LTR MaLR -209 170 99 3 1708 559 310 84 38 chr3 147272709 147273208 -12326575 - L1M3 LINE L1 -938 5202 4681 3 1708 397 295 57 18 chr3 147273239 147273467 -12326316 + L1MA5 LINE L1 5318 5554 -746 3 1708 225 242 0 0 chr3 147273762 147273828 -12325955 + L1MA5 LINE L1 6105 6170 -130 3 1708 460 249 138 0 chr3 147276048 147276229 -12323554 + MER2 DNA MER2_type 82 287 -58 3 1708 225 132 0 0 chr3 147276452 147276490 -12323293 + (TATG)n Simple_repeat Simple_repeat 4 41 0 3 1708 366 23 0 0 chr3 147276944 147276987 -12322796 + (CA)n Simple_repeat Simple_repeat 2 44 0 3 1708 260 120 0 20 chr3 147277000 147277051 -12322732 + (TA)n Simple_repeat Simple_repeat 1 50 0 3 1708 306 0 0 0 chr3 147277051 147277085 -12322698 + (TG)n Simple_repeat Simple_repeat 1 34 0 3 1708 409 378 34 15 chr3 147277216 147277420 -12322363 - MLT1G1-int LTR MaLR -433 1056 849 3 1708 282 354 88 100 chr3 147277463 147277786 -12321997 - MLT1G1 LTR MaLR -163 416 98 3 1708 620 48 38 9 chr3 147277786 147277892 -12321891 - L1Md_F3 LINE L1 0 6584 6476 3 1708 282 354 88 100 chr3 147277892 147277988 -12321795 - MLT1G1 LTR MaLR -482 97 2 3 1708 256 333 12 0 chr3 147278267 147278351 -12321432 - MIR SINE MIR -82 180 96 3 1708 1363 86 38 0 chr3 147279588 147279774 -12320009 - B2_Mm2 SINE B2 -2 193 1 3 1708 21 0 0 0 chr3 147279785 147279806 -12319977 + AT_rich Low_complexity Low_complexity 1 21 0 3 1708 266 268 14 0 chr3 147281561 147281660 -12318123 + (TG)n Simple_repeat Simple_repeat 1 100 0 3 1708 3005 89 2 0 chr3 147281660 147282055 -12317728 + MTA_Mm LTR MaLR 1 396 0 3 1708 202 303 0 48 chr3 147282055 147282063 -12317720 + (TATATG)n Simple_repeat Simple_repeat 5 12 0 3 1708 580 302 43 43 chr3 147282086 147282273 -12317510 - B4 SINE B4 -24 268 82 3 1708 1030 130 11 0 chr3 147282279 147282456 -12317327 + (TCTCCC)n Simple_repeat Simple_repeat 2 180 0 3 1708 23 0 0 0 chr3 147283304 147283327 -12316456 + AT_rich Low_complexity Low_complexity 1 23 0 3 1708 227 321 0 0 chr3 147284256 147284312 -12315471 + (CATG)n Simple_repeat Simple_repeat 3 58 0 3 1708 320 241 76 55 chr3 147285819 147285964 -12313819 + L1MEg LINE L1 1805 1952 -4132 3 1708 7250 92 1 2 chr3 147286654 147287968 -12311815 + L1_Mus3 LINE L1 4864 6176 -462 3 1708 418 125 0 12 chr3 147288035 147288116 -12311667 - Lx2 LINE L1 0 6997 6918 3 1708 340 295 8 8 chr3 147288204 147288337 -12311446 + Lx9 LINE L1 7196 7328 -316 3 1708 310 253 33 11 chr3 147288336 147288428 -12311355 - Lx9 LINE L1 -430 7214 7121 3 1708 1412 197 115 42 chr3 147288426 147288554 -12311229 + Lx9 LINE L1 7207 7334 -310 3 1708 679 99 24 32 chr3 147288554 147288679 -12311104 + L1Md_T LINE L1 6456 6579 -3 3 1708 1412 197 115 42 chr3 147288679 147288958 -12310825 + Lx9 LINE L1 7335 7644 0 3 1708 379 279 20 176 chr3 147288953 147289053 -12310730 + Lx9 LINE L1 7315 7414 -230 3 1708 539 279 7 7 chr3 147289053 147289190 -12310593 + B1_Mur3 SINE Alu 2 138 -11 3 1708 189 0 0 0 chr3 147289192 147289213 -12310570 + (TGAA)n Simple_repeat Simple_repeat 3 23 0 3 1708 379 279 20 176 chr3 147289213 147289500 -12310283 + Lx9 LINE L1 7415 7644 0 3 1708 342 219 71 0 chr3 147290624 147290779 -12309004 + (TCTA)n Simple_repeat Simple_repeat 2 167 0 3 1708 1451 280 70 54 chr3 147290781 147291376 -12308407 - Lx5 LINE L1 -5 7455 6477 3 1708 6052 191 17 81 chr3 147291374 147292615 -12307168 - L1_Mur3 LINE L1 -15 5865 4718 3 1708 3284 45 0 0 chr3 147292615 147293047 -12306736 - L1Md_A LINE L1 0 6582 6182 3 1708 6052 191 17 81 chr3 147293047 147293295 -12306488 - L1_Mur3 LINE L1 -1163 4717 4470 3 1708 5382 47 3 5 chr3 147294462 147295132 -12304651 - L1Md_F2 LINE L1 -12 6570 5902 3 1708 785 339 72 59 chr3 147295664 147296190 -12303593 + MT2A LTR ERVL 1 533 0 3 1708 475 312 69 69 chr3 147296607 147296999 -12302784 + Ricksha_c DNA MuDR 355 746 -1302 3 1708 299 343 78 8 chr3 147297758 147297995 -12301788 + MLT1E LTR MaLR 1 302 -351 3 1708 771 298 91 4 chr3 147298223 147298476 -12301307 - B4A SINE B4 -10 282 8 3 1708 1952 124 3 86 chr3 147298481 147298843 -12300940 - IAPLTR1a_Mm LTR ERVK -5 332 1 4 1708 26 64 0 0 chr3 147300512 147300559 -12299224 + AT_rich Low_complexity Low_complexity 1 47 0 4 1708 1155 70 0 0 chr3 147303998 147304169 -12295614 + (GA)n Simple_repeat Simple_repeat 1 171 0 4 1708 518 371 82 50 chr3 147304203 147304484 -12295299 + B4A SINE B4 3 292 0 4 1708 237 292 62 10 chr3 147304736 147304833 -12294950 + MTC-int LTR MaLR 494 595 -663 4 1708 4100 99 93 30 chr3 147307731 147308432 -12291351 - Lx3_Mus LINE L1 -499 6510 5766 4 1708 2873 97 34 31 chr3 147308432 147308909 -12290874 + Lx3_Mus LINE L1 6529 7006 -3 4 1708 420 118 0 0 chr3 147309241 147309309 -12290474 + (CATA)n Simple_repeat Simple_repeat 1 68 0 4 1708 198 103 0 0 chr3 147309952 147309981 -12289802 + (CGTG)n Simple_repeat Simple_repeat 3 31 0 4 1708 414 0 0 0 chr3 147310676 147310722 -12289061 + (CAA)n Simple_repeat Simple_repeat 2 47 0 4 1708 262 278 44 53 chr3 147310772 147310886 -12288897 - B4A SINE B4 -43 249 137 4 1708 428 295 121 45 chr3 147310934 147311133 -12288650 - B4A SINE B4 -78 214 1 4 1708 29 70 0 0 chr3 147312341 147312398 -12287385 + AT_rich Low_complexity Low_complexity 1 57 0 4 1708 561 297 29 29 chr3 147312437 147312676 -12287107 - Tigger14a DNA MER2_type -85 239 1 4 1708 280 269 77 0 chr3 147312718 147312822 -12286961 + L1MC1 LINE L1 6013 6124 -209 4 1708 519 71 7 0 chr3 147313109 147313192 -12286591 - L1Md_F LINE L1 -5603 957 870 4 1708 575 82 0 0 chr3 147313185 147313258 -12286525 + L1Md_F2 LINE L1 5514 5586 -297 4 1708 8400 33 2 0 chr3 147313259 147314250 -12285533 + L1Md_F2 LINE L1 5588 6580 -2 4 1708 251 342 40 0 chr3 147316971 147317047 -12282736 + ID4_ SINE ID 2 80 -3 4 1708 200 250 0 27 chr3 147317060 147317134 -12282649 + (TAAA)n Simple_repeat Simple_repeat 2 73 0 4 1708 999 331 29 26 chr3 147317729 147317966 -12281817 + Tigger7 DNA MER2_type 30 267 -2224 4 1708 1947 180 164 109 chr3 147317966 147318620 -12281163 + RMER6C LTR ERVK 1 690 0 4 1708 999 331 29 26 chr3 147318620 147318763 -12281020 + Tigger7 DNA MER2_type 268 411 -2080 4 1708 37 0 0 0 chr3 147319889 147319926 -12279857 + AT_rich Low_complexity Low_complexity 1 37 0 4 1708 510 298 26 20 chr3 147321679 147321874 -12277909 + MER121 Unknown Unknown 128 323 -89 4 1708 3415 43 0 0 chr3 147323018 147323432 -12276351 + L1Md_T LINE L1 6169 6582 0 4 1708 426 146 0 0 chr3 147324194 147324276 -12275507 + (TG)n Simple_repeat Simple_repeat 1 82 0 4 1709 308 103 17 0 chr3 147324961 147325019 -12274764 + (TC)n Simple_repeat Simple_repeat 2 60 0 4 1709 408 161 0 0 chr3 147326159 147326240 -12273543 + (TG)n Simple_repeat Simple_repeat 2 82 0 4 1709 494 179 0 18 chr3 147326685 147326799 -12272984 + L1_Mus4 LINE L1 6520 6631 -5 4 1709 207 0 0 0 chr3 147326899 147326922 -12272861 + (TGG)n Simple_repeat Simple_repeat 3 25 0 4 1709 261 0 0 0 chr3 147326923 147326952 -12272831 + (ATTG)n Simple_repeat Simple_repeat 3 31 0 4 1709 22 0 0 0 chr3 147327802 147327824 -12271959 + AT_rich Low_complexity Low_complexity 1 22 0 4 1709 428 304 16 8 chr3 147328255 147328381 -12271402 - B4A SINE B4 -163 129 3 4 1709 279 0 0 0 chr3 147328769 147328800 -12270983 + (TG)n Simple_repeat Simple_repeat 1 31 0 4 1709 477 0 0 0 chr3 147328802 147328855 -12270928 + (GA)n Simple_repeat Simple_repeat 2 54 0 4 1709 604 180 0 14 chr3 147329545 147329561 -12270222 + polypurine Low_complexity Low_complexity 2 17 0 4 1709 1107 87 11 22 chr3 147329561 147329739 -12270044 + (GAAA)n Simple_repeat Simple_repeat 1 178 -187 4 1709 1107 87 11 22 chr3 147329745 147329931 -12269852 + (GAAA)n Simple_repeat Simple_repeat 179 365 0 4 1709 604 180 0 14 chr3 147329931 147330023 -12269760 + polypurine Low_complexity Low_complexity 24 115 0 4 1709 1103 72 0 43 chr3 147330023 147330211 -12269572 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 4 1709 604 180 0 14 chr3 147330211 147330235 -12269548 + polypurine Low_complexity Low_complexity 116 139 0 4 1709 1045 128 0 11 chr3 147330237 147330373 -12269410 + (GA)n Simple_repeat Simple_repeat 1 136 0 4 1709 1119 89 0 32 chr3 147330373 147330559 -12269224 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 4 1709 1045 128 0 11 chr3 147330559 147330660 -12269123 + (GA)n Simple_repeat Simple_repeat 1 99 0 4 1709 1212 101 0 0 chr3 147330660 147330838 -12268945 + (GAAA)n Simple_repeat Simple_repeat 1 178 0 4 1709 856 118 11 43 chr3 147330838 147330861 -12268922 + polypurine Low_complexity Low_complexity 87 107 0 4 1709 1095 139 0 0 chr3 147330861 147331041 -12268742 + (GA)n Simple_repeat Simple_repeat 1 180 0 4 1709 856 118 11 43 chr3 147331041 147331091 -12268692 + polypurine Low_complexity Low_complexity 108 155 0 4 1709 1258 67 0 22 chr3 147331091 147331275 -12268508 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 4 1709 856 118 11 43 chr3 147331275 147331299 -12268484 + polypurine Low_complexity Low_complexity 156 179 0 4 1709 249 360 85 24 chr3 147331324 147331572 -12268211 - MER90a LTR ERV1 -69 545 283 4 1709 22 0 0 0 chr3 147332295 147332317 -12267466 + AT_rich Low_complexity Low_complexity 1 22 0 4 1709 573 15 0 0 chr3 147333038 147333104 -12266679 + (TG)n Simple_repeat Simple_repeat 1 66 0 4 1709 273 320 20 20 chr3 147333749 147333851 -12265932 + MER21B LTR ERV1 207 308 -555 4 1709 369 274 24 0 chr3 147333999 147334083 -12265700 + MER57E1 LTR ERV1 1 86 -286 4 1709 3368 181 22 120 chr3 147334186 147335045 -12264738 + RMER21B LTR ERV1 66 840 -2 4 1709 264 334 126 41 chr3 147335103 147335493 -12264290 + L2 LINE L2 2130 2552 -867 4 1709 190 194 0 31 chr3 147337291 147337355 -12262428 + (TA)n Simple_repeat Simple_repeat 2 63 0 4 1709 195 260 0 57 chr3 147337508 147337561 -12262222 + L2a LINE L2 3376 3425 -1 4 1709 655 320 15 0 chr3 147337577 147337783 -12262000 - B3 SINE B2 -6 210 2 4 1709 576 257 0 0 chr3 147338264 147338412 -12261371 + L1MA4 LINE L1 5783 5930 -370 4 1709 735 194 210 6 chr3 147338691 147338867 -12260916 - B3 SINE B2 -2 214 3 4 1709 455 326 77 62 chr3 147339106 147339443 -12260340 - MLT1E1 LTR MaLR 0 654 313 4 1709 435 295 98 62 chr3 147340015 147340239 -12259544 + B4A SINE B4 2 233 -59 4 1709 297 0 0 0 chr3 147340276 147340309 -12259474 + (A)n Simple_repeat Simple_repeat 1 33 0 4 1709 198 0 0 0 chr3 147340310 147340332 -12259451 + (CA)n Simple_repeat Simple_repeat 1 22 0 4 1709 566 28 14 0 chr3 147340541 147340613 -12259170 + (GA)n Simple_repeat Simple_repeat 2 74 0 4 1709 325 239 33 0 chr3 147340696 147340788 -12258995 - MER2 DNA MER2_type -111 234 140 4 1709 180 0 0 0 chr3 147341236 147341256 -12258527 + (A)n Simple_repeat Simple_repeat 1 20 0 4 1709 1103 257 69 31 chr3 147343763 147344153 -12255630 + Lx6 LINE L1 7025 7429 -31 4 1709 25 0 0 0 chr3 147344154 147344179 -12255604 + AT_rich Low_complexity Low_complexity 1 25 0 4 1709 375 202 0 0 chr3 147344463 147344562 -12255221 + (TAGA)n Simple_repeat Simple_repeat 3 101 0 4 1709 396 0 0 0 chr3 147345283 147345327 -12254456 + (TC)n Simple_repeat Simple_repeat 1 44 0 4 1709 396 0 0 0 chr3 147345327 147345370 -12254413 + (CA)n Simple_repeat Simple_repeat 1 44 0 4 1709 324 0 0 0 chr3 147345707 147345743 -12254040 + (TG)n Simple_repeat Simple_repeat 2 37 0 4 1709 318 311 49 8 chr3 147345797 147345920 -12253863 - RSINE1 SINE B4 -35 130 3 4 1709 347 329 29 40 chr3 147346208 147346382 -12253401 - L1MEg LINE L1 -3557 2589 2418 4 1709 207 0 0 0 chr3 147346740 147346763 -12253020 + (CAA)n Simple_repeat Simple_repeat 2 24 0 4 1709 288 290 51 44 chr3 147346770 147346907 -12252876 + B1F SINE Alu 1 138 -11 4 1709 398 346 71 37 chr3 147347072 147347426 -12252357 - L1MEg LINE L1 -4652 1590 1225 4 1709 1031 293 31 18 chr3 147347449 147347831 -12251952 - Lx8 LINE L1 -268 7205 6819 4 1709 554 0 15 0 chr3 147347834 147347900 -12251883 + (TCTA)n Simple_repeat Simple_repeat 2 68 0 4 1709 230 282 10 0 chr3 147347900 147348003 -12251780 + (TA)n Simple_repeat Simple_repeat 1 104 0 4 1709 22 0 0 0 chr3 147348512 147348534 -12251249 + AT_rich Low_complexity Low_complexity 1 22 0 4 1709 2284 166 32 18 chr3 147350162 147350597 -12249186 + BGLII_B LTR ERVK 1 441 0 4 1709 432 0 0 0 chr3 147350984 147351032 -12248751 + (TG)n Simple_repeat Simple_repeat 2 49 0 4 1709 577 343 65 8 chr3 147351044 147351291 -12248492 + MLT1C LTR MaLR 205 465 -2 4 1709 599 264 98 105 chr3 147352061 147352366 -12247417 + MTE2a LTR MaLR 75 377 -2 4 1709 4677 56 1 0 chr3 147352593 147353289 -12246494 - L1Md_F2 LINE L1 -618 5964 5268 4 1709 4466 68 5 24 chr3 147353289 147353904 -12245879 + L1Md_F2 LINE L1 5980 6582 0 4 1709 203 254 0 0 chr3 147353917 147353980 -12245803 + A-rich Low_complexity Low_complexity 1 63 0 4 1709 285 338 129 67 chr3 147354920 147355291 -12244492 + MER34A LTR ERV1 21 414 -157 4 1709 2328 241 64 34 chr3 147355430 147356177 -12243606 + Lx7 LINE L1 6927 7696 0 4 1709 21 0 0 0 chr3 147356197 147356218 -12243565 + AT_rich Low_complexity Low_complexity 1 21 0 4 1709 22 0 0 0 chr3 147356487 147356509 -12243274 + AT_rich Low_complexity Low_complexity 1 22 0 4 1709 36 62 0 0 chr3 147356777 147356841 -12242942 + AT_rich Low_complexity Low_complexity 1 64 0 4 1709 423 304 153 37 chr3 147357210 147357504 -12242279 + MLT2C1 LTR ERVL 3 330 -67 4 1709 5806 142 84 21 chr3 147357505 147357680 -12242103 - Lx2B LINE L1 -5 6995 6771 4 1709 2860 43 40 3 chr3 147357680 147358032 -12241751 + RLTR10B2 LTR ERVK 1 365 0 4 1709 5806 142 84 21 chr3 147358032 147358902 -12240881 - Lx2B LINE L1 -230 6770 5884 4 1709 244 104 21 0 chr3 147358902 147358950 -12240833 - L1_Mur2 LINE L1 -564 5313 5265 4 1709 207 0 0 0 chr3 147358950 147358973 -12240810 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 4 1709 2632 164 34 0 chr3 147359016 147359510 -12240273 + L1_Mur2 LINE L1 4722 5232 -645 4 1709 477 34 0 0 chr3 147359637 147359696 -12240087 + (CA)n Simple_repeat Simple_repeat 2 60 0 4 1709 3306 35 0 2 chr3 147361731 147362128 -12237655 - L1Md_F2 LINE L1 -11 6571 6176 4 1709 234 0 0 0 chr3 147364532 147364558 -12235225 + (CA)n Simple_repeat Simple_repeat 1 26 0 4 1709 220 267 132 79 chr3 147364746 147364762 -12235021 - B1F SINE Alu -1 148 88 5 1709 273 294 35 0 chr3 147364762 147364847 -12234936 - ID_B1 SINE B4 -9 215 128 5 1709 220 267 132 79 chr3 147364847 147364860 -12234923 - B1F SINE Alu -1 87 29 5 1709 867 229 34 5 chr3 147365089 147365295 -12234488 - B3 SINE B2 0 216 5 5 1709 21 0 0 0 chr3 147366552 147366573 -12233210 + AT_rich Low_complexity Low_complexity 1 21 0 5 1709 408 125 0 0 chr3 147366749 147366813 -12232970 + (CA)n Simple_repeat Simple_repeat 2 65 0 5 1709 414 275 76 0 chr3 147367134 147367265 -12232518 - B1F2 SINE Alu -8 141 1 5 1709 207 0 0 0 chr3 147368340 147368363 -12231420 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 5 1709 687 273 62 44 chr3 147368455 147368888 -12230895 + L1MA8 LINE L1 5788 6228 -63 5 1709 345 177 0 16 chr3 147368888 147368951 -12230832 + HAL1-3A_ME LINE L1 1966 2027 -831 5 1709 303 179 43 0 chr3 147368951 147369091 -12230692 + (CA)n Simple_repeat Simple_repeat 1 146 0 5 1709 1160 54 0 20 chr3 147369322 147369472 -12230311 + B1_Mus2 SINE Alu 1 147 0 5 1709 218 20 38 75 chr3 147369476 147369529 -12230254 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 5 1709 254 330 170 0 chr3 147369691 147369803 -12229980 - MTE2b LTR MaLR -248 131 1 5 1709 27 73 0 0 chr3 147371295 147371350 -12228433 + AT_rich Low_complexity Low_complexity 1 55 0 5 1709 342 0 0 0 chr3 147371429 147371467 -12228316 + (GA)n Simple_repeat Simple_repeat 2 39 0 5 1709 4837 131 60 51 chr3 147373551 147374446 -12225337 + Lx3C LINE L1 6072 6974 -2 5 1709 3145 78 2 12 chr3 147374517 147374948 -12224835 - L1Md_F2 LINE L1 -2 6580 6154 5 1709 1735 31 5 0 chr3 147374948 147375170 -12224613 + L1Md_F3 LINE L1 5715 5937 -647 5 1709 16453 74 4 8 chr3 147375166 147378012 -12221771 - L1Md_A LINE L1 -2401 3482 241 5 1709 209 353 9 47 chr3 147378129 147378236 -12221547 + MIRm SINE MIR 84 186 -90 5 1709 1020 40 0 0 chr3 147379191 147379316 -12220467 + (GAAA)n Simple_repeat Simple_repeat 1 125 0 5 1709 210 143 0 0 chr3 147379774 147379823 -12219960 + (T)n Simple_repeat Simple_repeat 1 49 0 5 1709 904 252 3 126 chr3 147381713 147381999 -12217784 - RMER19C LTR ERVK 0 611 361 5 1709 250 189 63 45 chr3 147382018 147382129 -12217654 - MurERV4_19-int LTR ERVK -118 5662 5550 5 1709 237 43 0 60 chr3 147382719 147382769 -12217014 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 5 1709 200 216 0 0 chr3 147382859 147382896 -12216887 + (TG)n Simple_repeat Simple_repeat 2 38 0 5 1709 271 196 75 75 chr3 147382898 147382992 -12216791 - Lx9 LINE L1 -170 7474 7381 5 1709 890 116 39 44 chr3 147384461 147384642 -12215141 + Lx LINE L1 6475 6654 0 5 1709 22 0 0 0 chr3 147384723 147384745 -12215038 + AT_rich Low_complexity Low_complexity 1 22 0 5 1709 593 70 23 0 chr3 147385595 147385681 -12214102 + (GAAA)n Simple_repeat Simple_repeat 4 91 0 5 1709 294 73 0 0 chr3 147385681 147385722 -12214061 + (TAA)n Simple_repeat Simple_repeat 2 42 0 5 1709 263 231 25 25 chr3 147386074 147386154 -12213629 + MIR SINE MIR 178 257 -5 5 1709 656 90 56 0 chr3 147387176 147387320 -12212463 + (TCTA)n Simple_repeat Simple_repeat 2 153 0 5 1709 309 300 61 35 chr3 147387378 147387492 -12212291 + RSINE1 SINE B4 11 127 -38 5 1709 551 101 46 0 chr3 147388237 147388346 -12211437 + (TAGA)n Simple_repeat Simple_repeat 4 117 0 5 1709 559 234 8 0 chr3 147388570 147388698 -12211085 - HERVL40-int LTR ERVL -69 5461 5333 5 1709 352 227 23 0 chr3 147388724 147388812 -12210971 - MER68-int LTR ERVL -159 2831 2742 5 1709 264 319 113 46 chr3 147389437 147389588 -12210195 - HERVL40-int LTR ERVL -1414 4116 3956 5 1709 1146 355 38 15 chr3 147389713 147390237 -12209546 - HERVL40-int LTR ERVL -1744 3786 3251 5 1709 211 189 0 0 chr3 147390646 147390683 -12209100 + (TG)n Simple_repeat Simple_repeat 1 37 0 5 1709 588 357 28 46 chr3 147390691 147390976 -12208807 - B4A SINE B4 -2 290 11 5 1709 303 313 30 0 chr3 147391003 147391102 -12208681 - HERVL40-int LTR ERVL -2721 2809 2708 5 1709 216 97 0 0 chr3 147391513 147391544 -12208239 + (TG)n Simple_repeat Simple_repeat 2 32 0 5 1709 435 305 124 43 chr3 147391816 147392174 -12207609 + RMER1B Other Other 145 750 -592 5 1709 579 265 68 75 chr3 147392278 147392543 -12207240 + RMER1C Other Other 1064 1326 -16 5 1709 328 270 10 29 chr3 147392554 147392657 -12207126 - LTR40a LTR ERVL -402 117 17 5 1709 333 0 0 0 chr3 147392828 147392865 -12206918 + (TG)n Simple_repeat Simple_repeat 1 37 0 5 1709 4369 108 1 151 chr3 147393136 147393717 -12206066 + MusHAL1 LINE L1 15 549 -2805 5 1709 1149 66 0 0 chr3 147393717 147393868 -12205915 + L1_Mus1 LINE L1 6417 6567 0 5 1709 4369 108 1 151 chr3 147393868 147394025 -12205758 + MusHAL1 LINE L1 550 672 -2682 5 1709 1068 69 21 0 chr3 147394025 147394169 -12205614 + B1_Mm SINE Alu 1 147 0 5 1709 4369 101 31 17 chr3 147394169 147394657 -12205126 + MusHAL1 LINE L1 658 1112 -2241 5 1709 1501 73 5 0 chr3 147394651 147394870 -12204913 + MusHAL1 LINE L1 1301 1520 -1833 5 1709 4690 26 0 0 chr3 147394874 147395417 -12204366 - L1Md_F3 LINE L1 -455 6129 5587 5 1709 615 111 0 0 chr3 147395422 147395521 -12204262 + L1Md_A LINE L1 1163 1261 -5463 5 1709 6949 80 27 3 chr3 147395515 147396514 -12203269 + MusHAL1 LINE L1 2327 3349 -4 5 1709 1056 80 0 0 chr3 147396620 147396757 -12203026 + B1_Mm SINE Alu 1 137 -10 5 1709 315 0 0 0 chr3 147396757 147396792 -12202991 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 5 1709 665 246 96 40 chr3 147396807 147397006 -12202777 + B3 SINE B2 4 213 -3 5 1709 277 297 0 26 chr3 147397123 147397199 -12202584 + B4 SINE B4 2 75 -217 5 1709 328 270 51 57 chr3 147397208 147397365 -12202418 + MER5B DNA MER1_type 23 178 0 5 1709 333 0 0 0 chr3 147398074 147398111 -12201672 + (TG)n Simple_repeat Simple_repeat 2 38 0 5 1709 297 246 0 0 chr3 147398115 147398180 -12201603 - RSINE1 SINE B4 -18 147 83 5 1709 343 200 158 23 chr3 147398441 147398574 -12201209 + MER5A1 DNA MER1_type 1 151 -15 5 1709 183 129 0 0 chr3 147398830 147398861 -12200922 + (TGG)n Simple_repeat Simple_repeat 1 31 0 5 1709 298 17 16 63 chr3 147399011 147399074 -12200709 + (CAAAAA)n Simple_repeat Simple_repeat 5 64 0 5 1709 203 264 0 19 chr3 147400498 147400552 -12199231 + CT-rich Low_complexity Low_complexity 3 55 0 5 1709 418 352 62 31 chr3 147400910 147401168 -12198615 + MLT1A1 LTR MaLR 141 406 -2 5 1709 273 98 0 38 chr3 147402723 147402776 -12197007 - MT2A LTR ERVL -2 531 481 5 1709 432 348 7 7 chr3 147402823 147402959 -12196824 - MT2A LTR ERVL -162 371 236 5 1709 825 130 0 0 chr3 147403273 147403568 -12196215 + (GAA)n Simple_repeat Simple_repeat 1 295 0 5 1709 615 161 0 0 chr3 147403569 147403730 -12196053 + GA-rich Low_complexity Low_complexity 2 162 0 5 1709 552 348 65 34 chr3 147403767 147404029 -12195754 + B4A SINE B4 2 271 -21 5 1709 256 267 26 13 chr3 147404930 147405006 -12194777 - L1MCb LINE L1 -5744 301 225 5 1709 297 0 0 0 chr3 147405431 147405464 -12194319 + (CAAAA)n Simple_repeat Simple_repeat 2 34 0 5 1709 225 0 0 0 chr3 147406935 147406960 -12192823 + (TG)n Simple_repeat Simple_repeat 2 26 0 5 1709 526 14 28 0 chr3 147407776 147407847 -12191936 + (TC)n Simple_repeat Simple_repeat 2 74 0 5 1709 369 0 0 0 chr3 147407847 147407887 -12191896 + (TG)n Simple_repeat Simple_repeat 2 42 0 5 1709 538 298 131 12 chr3 147407920 147408165 -12191618 - B4A SINE B4 -18 274 1 5 1709 505 292 85 35 chr3 147408467 147408666 -12191117 - MLT1A LTR MaLR 0 374 166 5 1709 1161 75 0 0 chr3 147409487 147409633 -12190150 + B1_Mm SINE Alu 2 147 0 5 1709 289 162 14 14 chr3 147410267 147410336 -12189447 + GA-rich Low_complexity Low_complexity 2 70 0 5 1709 41 21 0 0 chr3 147410584 147410632 -12189151 + AT_rich Low_complexity Low_complexity 1 48 0 5 1709 201 74 0 0 chr3 147412736 147412763 -12187020 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 5 1709 186 43 0 0 chr3 147412859 147412882 -12186901 + (T)n Simple_repeat Simple_repeat 1 23 0 5 1709 213 65 0 0 chr3 147414171 147414202 -12185581 + (TAGA)n Simple_repeat Simple_repeat 4 34 0 5 1709 670 156 0 43 chr3 147414221 147414409 -12185374 + (TA)n Simple_repeat Simple_repeat 1 180 0 5 1709 320 143 14 0 chr3 147414435 147414505 -12185278 + (TA)n Simple_repeat Simple_repeat 1 71 0 5 1709 1101 59 0 0 chr3 147414877 147415013 -12184770 - B1_Mm SINE Alu -10 137 2 5 1709 348 213 74 11 chr3 147415092 147415110 -12184673 + B4 SINE B4 67 90 -202 5 1709 596 102 11 0 chr3 147415110 147415198 -12184585 + B1_Mm SINE Alu 3 91 -56 5 1709 200 59 29 0 chr3 147415206 147415240 -12184543 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 5 1709 831 126 67 0 chr3 147415243 147415378 -12184405 + B1_Mus1 SINE Alu 5 148 0 5 1709 496 139 183 29 chr3 147415398 147415502 -12184281 + PB1D9 SINE Alu 1 120 0 5 1709 28 61 0 0 chr3 147415854 147415903 -12183880 + AT_rich Low_complexity Low_complexity 1 49 0 5 1709 224 57 111 28 chr3 147416736 147416808 -12182975 + (TCCA)n Simple_repeat Simple_repeat 2 79 0 5 1709 180 0 0 0 chr3 147419340 147419360 -12180423 + (TC)n Simple_repeat Simple_repeat 1 20 0 5 1709 273 57 0 0 chr3 147419362 147419397 -12180386 + (CA)n Simple_repeat Simple_repeat 2 36 0 5 1709 324 0 0 0 chr3 147419398 147419434 -12180349 + (GA)n Simple_repeat Simple_repeat 2 37 0 5 1709 335 330 40 0 chr3 147419697 147419797 -12179986 + PB1D10 SINE Alu 7 110 -7 5 1709 494 332 65 14 chr3 147420071 147420285 -12179498 + Lx8 LINE L1 6782 7006 -467 5 1709 210 109 73 0 chr3 147420545 147420600 -12179183 + (TAGA)n Simple_repeat Simple_repeat 1 59 0 5 1709 180 77 0 0 chr3 147421302 147421328 -12178455 + (T)n Simple_repeat Simple_repeat 1 26 0 5 1709 270 0 0 0 chr3 147421714 147421744 -12178039 + (GA)n Simple_repeat Simple_repeat 1 30 0 5 1709 2610 314 49 18 chr3 147421798 147422745 -12177038 + Lx8 LINE L1 6232 7207 -266 5 1709 270 0 0 0 chr3 147422858 147422888 -12176895 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 5 1709 699 325 11 22 chr3 147423270 147423547 -12176236 + B4 SINE B4 1 274 -18 5 1709 741 41 0 0 chr3 147423573 147423670 -12176113 + (CA)n Simple_repeat Simple_repeat 1 97 0 5 1709 205 197 15 76 chr3 147423928 147423994 -12175789 + L3 LINE CR1 146 207 -4282 5 1709 219 139 0 0 chr3 147425066 147425102 -12174681 + (CCA)n Simple_repeat Simple_repeat 3 38 0 5 1709 22 0 0 0 chr3 147427374 147427396 -12172387 + AT_rich Low_complexity Low_complexity 1 22 0 6 1709 269 251 30 28 chr3 147427437 147427525 -12172258 + MIRb SINE MIR 167 255 -7 6 1709 1119 102 0 0 chr3 147427622 147427769 -12172014 - B1_Mus1 SINE Alu 0 148 2 6 1709 323 375 37 6 chr3 147427780 147427941 -12171842 + MIR SINE MIR 32 197 -65 6 1709 2464 249 93 21 chr3 147429714 147430697 -12169086 - Lx9 LINE L1 -1690 5954 4866 6 1709 4792 236 105 39 chr3 147430714 147432172 -12167611 + Lx9 LINE L1 6091 7644 0 6 1709 7143 14 0 0 chr3 147432205 147433021 -12166762 + L1Md_A LINE L1 4771 5586 -297 6 1709 8442 31 0 0 chr3 147433021 147434015 -12165768 + L1Md_A LINE L1 5587 6580 -2 6 1709 8172 45 2 3 chr3 147434331 147435388 -12164395 - L1Md_F2 LINE L1 0 6582 5527 6 1709 303 93 0 0 chr3 147436384 147436427 -12163356 + (T)n Simple_repeat Simple_repeat 1 43 0 6 1709 21 36 0 0 chr3 147437680 147437708 -12162075 + AT_rich Low_complexity Low_complexity 1 28 0 6 1709 21 0 0 0 chr3 147437843 147437864 -12161919 + AT_rich Low_complexity Low_complexity 1 21 0 6 1709 452 62 16 0 chr3 147438793 147438857 -12160926 + (TA)n Simple_repeat Simple_repeat 1 65 0 6 1709 211 286 14 14 chr3 147440334 147440405 -12159378 + CT-rich Low_complexity Low_complexity 6 76 0 6 1709 209 150 62 0 chr3 147440830 147440910 -12158873 + (TTTG)n Simple_repeat Simple_repeat 1 85 0 6 1709 1266 276 22 22 chr3 147441018 147441381 -12158402 - ORR1D2 LTR MaLR -3 367 5 6 1709 16935 56 24 0 chr3 147441791 147444809 -12154974 - L1Md_F2 LINE L1 0 6582 3505 6 1709 375 361 27 20 chr3 147445976 147446123 -12153660 + RSINE1 SINE B4 2 149 -16 6 1709 1930 143 3 60 chr3 147446713 147447062 -12152721 + ORR1A4 LTR MaLR 1 329 0 6 1709 249 180 33 0 chr3 147448180 147448241 -12151542 + T-rich Low_complexity Low_complexity 4 66 0 6 1709 21 0 0 0 chr3 147448412 147448433 -12151350 + AT_rich Low_complexity Low_complexity 1 21 0 6 1709 38 68 0 0 chr3 147448453 147448526 -12151257 + AT_rich Low_complexity Low_complexity 1 73 0 6 1709 198 399 15 15 chr3 147449162 147449297 -12150486 - MIRb SINE MIR -49 219 85 6 1709 260 274 143 31 chr3 147449907 147450005 -12149778 - MIRm SINE MIR -6 270 162 6 1709 300 27 0 0 chr3 147453894 147453931 -12145852 + (CAGA)n Simple_repeat Simple_repeat 3 39 0 6 1709 614 303 54 0 chr3 147453931 147454116 -12145667 - ID_B1 SINE B4 -21 203 9 6 1709 1789 36 9 0 chr3 147454763 147454986 -12144797 + L1Md_F2 LINE L1 5362 5586 -297 6 1709 8095 45 1 6 chr3 147454986 147455985 -12143798 + L1Md_F2 LINE L1 5587 6580 -2 6 213 25 0 0 0 chr3 147455985 147456010 -12143773 + AT_rich Low_complexity Low_complexity 1 25 0 6 1710 248 324 145 3 chr3 147456623 147456796 -12142987 - L2b LINE L2 -212 3175 2968 6 1710 274 252 38 28 chr3 147457999 147458105 -12141678 - Lx9 LINE L1 -178 7466 7360 6 1710 307 297 81 86 chr3 147458145 147458355 -12141428 - B3A SINE B2 -4 212 4 6 1710 295 296 9 0 chr3 147458979 147459087 -12140696 - L1_Rod LINE L1 -17 5830 5722 6 1710 210 254 111 0 chr3 147459174 147459237 -12140546 + PB1D9 SINE Alu 5 74 -46 6 1710 984 289 66 13 chr3 147459523 147459992 -12139791 - L1M2 LINE L1 -503 5797 5304 6 1710 21 36 0 0 chr3 147460007 147460035 -12139748 + GC_rich Low_complexity Low_complexity 1 28 0 6 1710 207 372 57 28 chr3 147460952 147461093 -12138690 - L3b LINE CR1 -104 378 234 6 1710 805 337 70 23 chr3 147462801 147463144 -12136639 - ORR1E LTR MaLR 0 359 1 6 1710 434 314 141 62 chr3 147463144 147463419 -12136364 - ORR1E LTR MaLR -56 323 1 6 1710 287 380 93 22 chr3 147463592 147463775 -12136008 - LTR16B2 LTR ERVL -110 352 157 6 1710 519 307 39 22 chr3 147464137 147464317 -12135466 - MLT2D LTR ERVL -153 261 79 6 1710 680 240 0 20 chr3 147464317 147464466 -12135317 + B1_Mur3 SINE Alu 1 146 -3 6 1710 416 307 83 18 chr3 147464500 147464669 -12135114 - Charlie12 DNA MER1_type -2693 180 1 6 1710 496 309 33 69 chr3 147465207 147465482 -12134301 + ORR1D2 LTR MaLR 1 265 -105 6 1710 318 118 79 0 chr3 147466681 147466757 -12133026 + GA-rich Low_complexity Low_complexity 3 84 0 6 1710 3569 10 2 0 chr3 147467387 147467782 -12132001 + MTA_Mm LTR MaLR 1 396 0 6 1710 305 271 115 43 chr3 147467833 147468050 -12131733 - ORR1E LTR MaLR -100 279 26 6 1710 558 206 94 14 chr3 147469902 147470040 -12129743 + B1_Mur4 SINE Alu 2 150 0 6 1710 296 193 0 22 chr3 147471289 147471379 -12128404 + (TATATG)n Simple_repeat Simple_repeat 2 89 0 6 1710 187 389 28 0 chr3 147471616 147471688 -12128095 + L2b LINE L2 3286 3359 -16 6 1710 28 29 0 0 chr3 147474472 147474507 -12125276 + AT_rich Low_complexity Low_complexity 1 35 0 6 1710 25 31 0 0 chr3 147474670 147474702 -12125081 + AT_rich Low_complexity Low_complexity 1 32 0 6 1710 249 232 0 79 chr3 147474856 147474945 -12124838 + CT-rich Low_complexity Low_complexity 5 86 0 6 1710 513 71 0 0 chr3 147474956 147475026 -12124757 + (TC)n Simple_repeat Simple_repeat 1 70 0 6 1710 273 136 11 90 chr3 147475219 147475308 -12124475 + T-rich Low_complexity Low_complexity 5 86 0 6 1710 339 351 46 0 chr3 147476095 147476246 -12123537 + MLT1D LTR MaLR 346 503 -2 6 1710 3240 44 32 0 chr3 147478197 147478603 -12121180 + L1Md_F2 LINE L1 6164 6582 0 6 1710 693 167 0 0 chr3 147479244 147479370 -12120413 + (TA)n Simple_repeat Simple_repeat 1 126 0 6 1710 180 358 129 8 chr3 147479370 147479494 -12120289 - MIRc SINE MIR -127 141 3 6 1710 230 366 57 32 chr3 147480996 147481154 -12118629 + L2c LINE L2 2998 3159 -228 6 1710 338 347 46 41 chr3 147481259 147481552 -12118231 - MLT2B2 LTR ERVL -7 508 219 6 1710 623 297 55 81 chr3 147481635 147481906 -12117877 - MLT2B2 LTR ERVL -251 264 1 6 1710 267 291 76 5 chr3 147482759 147482887 -12116896 - MTE2a LTR MaLR -35 344 202 6 1710 587 337 30 42 chr3 147483085 147483322 -12116461 + ID_B1 SINE B4 6 246 -46 6 1710 325 316 133 35 chr3 147483322 147483525 -12116258 - MTE-int LTR MaLR -2 1578 1356 6 1710 1053 360 58 25 chr3 147483598 147484148 -12115635 - MTE-int LTR MaLR -216 1364 797 6 1710 769 343 108 22 chr3 147484202 147484563 -12115220 - ORR1E-int LTR MaLR -338 1242 851 6 1710 849 266 44 18 chr3 147484573 147484799 -12114984 - ORR1E-int LTR MaLR -1348 232 1 6 1710 600 320 48 98 chr3 147484801 147485179 -12114604 - ORR1E LTR MaLR 0 359 1 6 1710 301 306 149 25 chr3 147485366 147485391 -12114392 - MTEa LTR MaLR -1 378 354 6 1710 1001 124 7 0 chr3 147485391 147485536 -12114247 - B1_Mus1 SINE Alu -2 146 1 6 1710 301 306 149 25 chr3 147485536 147485671 -12114112 - MTEa LTR MaLR -26 353 199 6 1710 279 202 35 17 chr3 147485671 147485787 -12113996 + GA-rich Low_complexity Low_complexity 1 118 0 6 1710 517 264 33 108 chr3 147485794 147486006 -12113777 - MTEa LTR MaLR -164 215 20 6 1710 216 200 0 0 chr3 147488182 147488227 -12111556 + T-rich Low_complexity Low_complexity 1 45 0 6 1710 234 0 0 0 chr3 147488657 147488683 -12111100 + (T)n Simple_repeat Simple_repeat 1 26 0 6 1710 186 350 85 43 chr3 147488914 147489078 -12110705 - MIRb SINE MIR -88 180 10 6 1710 237 282 155 0 chr3 147489360 147489431 -12110352 - ID4_ SINE ID 0 83 2 6 1710 5995 87 136 3 chr3 147489771 147490674 -12109109 - RLTR13D5 LTR ERVK 0 1023 1 6 1710 2808 47 94 0 chr3 147490823 147491185 -12108598 - MTA_Mm LTR MaLR 0 396 1 6 1710 362 167 0 0 chr3 147491527 147491599 -12108184 - RMER1C Other Other -3 1339 1268 6 1710 228 138 0 79 chr3 147491752 147491815 -12107968 + (TTTG)n Simple_repeat Simple_repeat 2 59 0 6 1710 300 133 0 0 chr3 147492163 147492223 -12107560 + (CA)n Simple_repeat Simple_repeat 1 60 0 6 1710 252 59 0 0 chr3 147496029 147496063 -12103720 + (CA)n Simple_repeat Simple_repeat 1 34 0 6 1710 504 0 0 0 chr3 147496569 147496625 -12103158 + (CACCG)n Simple_repeat Simple_repeat 4 59 0 6 1710 228 337 28 76 chr3 147498796 147498963 -12100820 + MIRc SINE MIR 30 184 -24 6 1710 244 298 25 58 chr3 147499350 147499471 -12100312 - RMER12 LTR ERVK -486 836 720 6 1710 435 19 0 0 chr3 147499542 147499594 -12100189 + (CA)n Simple_repeat Simple_repeat 1 52 0 6 1710 635 73 48 16 chr3 147499595 147499721 -12100062 + (CAGAGA)n Simple_repeat Simple_repeat 2 131 0 6 1710 325 198 34 51 chr3 147499794 147499911 -12099872 - Lx9 LINE L1 -8 7636 7522 6 1710 324 0 0 0 chr3 147499912 147499948 -12099835 + (TCTA)n Simple_repeat Simple_repeat 1 36 0 6 1710 230 174 0 0 chr3 147499953 147499999 -12099784 - Lx9 LINE L1 -186 7458 7413 6 1710 242 234 0 0 chr3 147500000 147500047 -12099736 - Lx9 LINE L1 -233 7411 7365 1 1710 262 222 167 36 chr3 147500943 147501027 -12098756 - B3A SINE B2 -102 96 2 2 1710 429 109 0 0 chr3 147501086 147501150 -12098633 + (TGGA)n Simple_repeat Simple_repeat 2 65 0 3 1710 459 0 0 0 chr3 147501620 147501671 -12098112 + (CA)n Simple_repeat Simple_repeat 2 52 0 4 1710 281 309 40 60 chr3 147502391 147502491 -12097292 - PB1D10 SINE Alu -1 116 19 5 1710 490 308 0 9 chr3 147503927 147504057 -12095726 + B1F SINE Alu 8 131 -16 6 1710 21 36 0 0 chr3 147504199 147504227 -12095556 + AT_rich Low_complexity Low_complexity 1 28 0 7 1710 356 164 222 32 chr3 147504328 147504454 -12095329 + Lx8 LINE L1 7261 7410 -63 8 1710 836 274 44 95 chr3 147504948 147505263 -12094520 - MLT1B LTR MaLR -91 299 1 9 1710 503 288 22 15 chr3 147505902 147506036 -12093747 + B1F SINE Alu 15 149 0 1 1710 1231 284 78 10 chr3 147507626 147508010 -12091773 - MTD LTR MaLR 0 419 10 1 1710 3097 157 30 7 chr3 147508884 147509425 -12090358 - RLTR31_Mur LTR ERVK 0 553 1 1 1710 473 261 72 111 chr3 147509800 147509874 -12089909 - B3A SINE B2 -4 212 147 1 1710 363 23 0 0 chr3 147509874 147509918 -12089865 + (TC)n Simple_repeat Simple_repeat 1 44 0 1 1710 360 0 0 0 chr3 147509918 147509958 -12089825 + (TG)n Simple_repeat Simple_repeat 2 41 0 1 1710 473 296 88 20 chr3 147509958 147510089 -12089694 - B3A SINE B2 -42 156 15 1 1710 21 0 0 0 chr3 147511502 147511523 -12088260 + AT_rich Low_complexity Low_complexity 1 21 0 1 1710 23 0 0 0 chr3 147511867 147511890 -12087893 + AT_rich Low_complexity Low_complexity 1 23 0 1 1710 1769 121 3 13 chr3 147512386 147512696 -12087087 - L1_Mur2 LINE L1 -1896 3981 3675 1 1710 7047 92 13 4 chr3 147512701 147513724 -12086059 + L1_Mus4 LINE L1 5591 6622 -14 1 1710 189 0 0 0 chr3 147513724 147513745 -12086038 + (GA)n Simple_repeat Simple_repeat 2 22 0 2 1710 306 246 52 22 chr3 147514578 147514667 -12085116 + B4 SINE B4 3 95 -197 2 1710 267 257 0 67 chr3 147515451 147515526 -12084257 + ID4 SINE ID 12 81 -2 2 1710 643 109 0 26 chr3 147515578 147515691 -12084092 + (GGAA)n Simple_repeat Simple_repeat 3 112 0 2 1710 1422 198 52 3 chr3 147518011 147518340 -12081443 - Lx3C LINE L1 -2 6974 6630 2 1710 3510 53 0 0 chr3 147518511 147518941 -12080842 + L1_Mus1 LINE L1 6138 6567 0 2 1710 216 0 0 0 chr3 147518958 147518982 -12080801 + (A)n Simple_repeat Simple_repeat 1 24 0 2 1710 482 320 43 49 chr3 147520532 147520716 -12079067 + B3A SINE B2 2 184 -14 2 1710 659 163 15 4 chr3 147522033 147522286 -12077497 + CT-rich Low_complexity Low_complexity 1 255 0 2 1710 1034 116 0 13 chr3 147522286 147522435 -12077348 - B1_Mus1 SINE Alu 0 148 2 2 1710 38 61 0 0 chr3 147522650 147522716 -12077067 + AT_rich Low_complexity Low_complexity 1 66 0 3 1710 271 239 29 29 chr3 147523279 147523348 -12076435 - RMER30 DNA MER1_type -1 201 133 3 1710 371 319 9 17 chr3 147523782 147523897 -12075886 + ID_B1 SINE B4 80 193 -31 3 1710 189 94 0 0 chr3 147524201 147524233 -12075550 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 3 1710 234 235 0 0 chr3 147526053 147526104 -12073679 - L2a LINE L2 0 3426 3376 3 1710 576 102 0 0 chr3 147526771 147526869 -12072914 + (GA)n Simple_repeat Simple_repeat 1 98 0 3 1710 494 346 21 108 chr3 147527468 147527756 -12072027 + B4A SINE B4 2 264 -28 3 1710 389 20 20 0 chr3 147527767 147527817 -12071966 + (CA)n Simple_repeat Simple_repeat 1 51 0 3 1710 267 31 0 0 chr3 147528019 147528051 -12071732 + (TG)n Simple_repeat Simple_repeat 2 33 0 3 1710 241 312 0 0 chr3 147529253 147529365 -12070418 + A-rich Low_complexity Low_complexity 1 112 0 3 1710 392 412 37 12 chr3 147529468 147529630 -12070153 + LTR16B LTR ERVL 116 281 -182 4 1710 679 294 24 0 chr3 147529637 147529807 -12069976 + B3A SINE B2 9 182 -16 4 1710 267 130 0 0 chr3 147529807 147529861 -12069922 + (GA)n Simple_repeat Simple_repeat 1 54 0 4 1710 281 348 93 19 chr3 147529881 147530042 -12069741 + LTR16B LTR ERVL 280 452 -11 4 1710 348 319 26 0 chr3 147530509 147530625 -12069158 + MTE2a LTR MaLR 1 119 -260 4 1710 1180 202 24 24 chr3 147530645 147530894 -12068889 + ORR1A4 LTR MaLR 1 249 -80 4 1710 519 329 13 100 chr3 147530925 147531155 -12068628 + ID_B1 SINE B4 7 216 -8 4 1710 271 324 9 89 chr3 147531192 147531304 -12068479 + B3A SINE B2 1 103 -95 4 1710 223 271 0 48 chr3 147531481 147531543 -12068240 - RSINE1 SINE B4 -103 62 4 4 1710 214 361 115 7 chr3 147531627 147531775 -12068008 - MIR SINE MIR -55 207 44 4 1710 298 305 19 9 chr3 147531874 147531980 -12067803 + MLT1D LTR MaLR 397 503 -2 4 1710 34 79 0 0 chr3 147532717 147532793 -12066990 + AT_rich Low_complexity Low_complexity 1 76 0 5 1710 492 117 0 0 chr3 147533363 147533440 -12066343 + (GGAA)n Simple_repeat Simple_repeat 3 79 0 5 1710 31203 79 3 29 chr3 147533866 147537988 -12061795 + L1Md_F2 LINE L1 380 4424 -1459 5 1710 4476 48 0 0 chr3 147537988 147538526 -12061257 + L1Md_T LINE L1 6043 6580 -2 5 1710 31203 68 2 10 chr3 147538526 147539728 -12060055 + L1Md_F2 LINE L1 4425 5586 -297 5 1710 8063 52 3 2 chr3 147539728 147540722 -12059061 + L1Md_F2 LINE L1 5587 6581 -1 5 1710 188 79 53 0 chr3 147541517 147541555 -12058228 + (TAAAA)n Simple_repeat Simple_repeat 2 41 0 5 1710 421 348 6 27 chr3 147542672 147542855 -12056928 - B3A SINE B2 -18 180 2 5 1710 25 31 0 0 chr3 147543180 147543212 -12056571 + AT_rich Low_complexity Low_complexity 1 32 0 5 1710 321 258 187 5 chr3 147543218 147543421 -12056362 + L1MA6 LINE L1 6028 6267 -33 5 1710 361 361 7 15 chr3 147543578 147543713 -12056070 + B1F2 SINE Alu 10 143 -6 5 1710 300 356 59 80 chr3 147543903 147544190 -12055593 + B4 SINE B4 11 291 -1 5 1710 603 27 0 0 chr3 147544538 147544611 -12055172 + (CA)n Simple_repeat Simple_repeat 2 74 0 6 1710 198 0 0 0 chr3 147544896 147544918 -12054865 + (TG)n Simple_repeat Simple_repeat 2 23 0 6 1710 207 100 0 0 chr3 147544925 147544955 -12054828 + (T)n Simple_repeat Simple_repeat 1 30 0 6 1710 320 353 9 0 chr3 147545479 147545595 -12054188 + GA-rich Low_complexity Low_complexity 5 121 0 6 1710 200 354 35 17 chr3 147545775 147545890 -12053893 - L3 LINE CR1 -200 4289 4173 6 1710 457 272 43 58 chr3 147546897 147547104 -12052679 + MLT2B2 LTR ERVL 5 208 -307 6 1710 236 308 46 150 chr3 147547157 147547310 -12052473 + MLT2B2 LTR ERVL 379 515 -52 6 1710 24 0 0 0 chr3 147550004 147550028 -12049755 + AT_rich Low_complexity Low_complexity 1 24 0 6 1710 1670 219 7 42 chr3 147550028 147550456 -12049327 - Lx2B LINE L1 -5 6995 6583 6 1710 420 20 0 0 chr3 147550613 147550662 -12049121 + (CA)n Simple_repeat Simple_repeat 2 50 0 6 1710 349 284 61 4 chr3 147550664 147550788 -12048995 - PB1D9 SINE Alu -20 130 7 6 1710 2463 49 0 3 chr3 147552029 147552336 -12047447 + L1_Mus1 LINE L1 6262 6567 0 7 1710 282 56 0 0 chr3 147553931 147553967 -12045816 + (CA)n Simple_repeat Simple_repeat 2 37 0 7 1710 612 90 369 0 chr3 147554009 147554131 -12045652 - B2_Mm2 SINE B2 -27 168 2 7 1710 382 300 31 62 chr3 147554157 147554285 -12045498 + MTEa LTR MaLR 70 193 -186 7 1710 558 0 0 0 chr3 147554290 147554352 -12045431 + (TC)n Simple_repeat Simple_repeat 2 63 0 7 1710 402 304 58 22 chr3 147554364 147554502 -12045281 + MTEa LTR MaLR 237 379 0 7 1710 219 69 0 0 chr3 147554697 147554726 -12045057 + (T)n Simple_repeat Simple_repeat 1 29 0 7 1710 588 278 13 118 chr3 147557187 147557372 -12042411 + B3 SINE B2 5 178 -38 7 1710 1305 91 0 0 chr3 147557372 147557648 -12042135 + (CA)n Simple_repeat Simple_repeat 1 276 0 7 1710 588 278 13 118 chr3 147557648 147557697 -12042086 + B3 SINE B2 179 216 0 7 1710 491 294 14 14 chr3 147557993 147558131 -12041652 - RSINE1 SINE B4 -24 141 4 7 1710 372 271 45 37 chr3 147558623 147558757 -12041026 + B1F SINE Alu 15 149 0 7 1710 221 386 0 0 chr3 147558783 147558853 -12040930 + ID2 SINE ID 5 74 -9 8 1710 180 0 0 0 chr3 147560680 147560700 -12039083 + (TAAA)n Simple_repeat Simple_repeat 3 22 0 8 1710 238 322 19 13 chr3 147560745 147560899 -12038884 + (TA)n Simple_repeat Simple_repeat 2 156 0 8 1710 408 256 49 0 chr3 147562103 147562267 -12037516 + L1M5 LINE L1 4899 5070 -1076 8 1710 440 304 99 45 chr3 147562292 147562644 -12037139 + L1M5 LINE L1 5280 5650 -523 8 1710 740 293 10 5 chr3 147562714 147562923 -12036860 - B3 SINE B2 -6 210 1 8 1710 21 0 0 0 chr3 147563114 147563135 -12036648 + AT_rich Low_complexity Low_complexity 1 21 0 8 1710 21 0 0 0 chr3 147563317 147563338 -12036445 + AT_rich Low_complexity Low_complexity 1 21 0 8 1710 22 0 0 0 chr3 147564731 147564753 -12035030 + AT_rich Low_complexity Low_complexity 1 22 0 8 1710 726 249 79 0 chr3 147564916 147565105 -12034678 - B3 SINE B2 -11 205 2 8 1710 321 337 108 40 chr3 147565114 147565290 -12034493 - B3 SINE B2 -28 188 1 8 1710 477 0 0 0 chr3 147565722 147565775 -12034008 + (CA)n Simple_repeat Simple_repeat 2 54 0 9 1710 531 297 85 16 chr3 147566091 147566279 -12033504 + RCHARR1 DNA MER1_type 8 208 -766 9 1710 414 0 0 0 chr3 147566279 147566325 -12033458 + (CA)n Simple_repeat Simple_repeat 2 47 0 9 1710 276 253 95 0 chr3 147566343 147566438 -12033345 + RCHARR1 DNA MER1_type 287 390 -584 9 1710 414 0 0 0 chr3 147566573 147566619 -12033164 + (TG)n Simple_repeat Simple_repeat 2 47 0 9 1710 765 331 37 30 chr3 147566634 147566902 -12032881 - B4A SINE B4 -22 270 1 9 1710 211 54 26 26 chr3 147567020 147567058 -12032725 + (TTA)n Simple_repeat Simple_repeat 2 39 0 9 1710 4322 116 9 6 chr3 147567065 147567706 -12032077 - Lx3B LINE L1 -4 6969 6327 9 1710 1454 93 37 0 chr3 147567706 147567922 -12031861 + Lx3B LINE L1 6084 6307 -666 9 1710 275 286 31 87 chr3 147567922 147568083 -12031700 + RCHARR1 DNA MER1_type 823 974 0 9 1710 966 42 0 0 chr3 147568167 147568286 -12031497 + (GAA)n Simple_repeat Simple_repeat 2 120 0 9 1710 213 385 10 10 chr3 147568537 147568634 -12031149 - L2a LINE L2 -257 3169 3073 9 1710 3504 135 171 36 chr3 147568653 147569066 -12030717 - RLTR13B2 LTR ERVK 0 822 407 9 1710 495 0 0 0 chr3 147569066 147569121 -12030662 + (TG)n Simple_repeat Simple_repeat 2 56 0 1 1710 3504 135 171 36 chr3 147569121 147569431 -12030352 - RLTR13B2 LTR ERVK -416 406 1 9 1710 27 0 0 0 chr3 147569990 147570017 -12029766 + AT_rich Low_complexity Low_complexity 1 27 0 1 1710 221 326 25 64 chr3 147572813 147572970 -12026813 + MIRb SINE MIR 54 204 -64 1 1710 243 336 78 73 chr3 147573086 147573295 -12026488 - RLTR12B LTR ERVK -265 303 89 1 1710 5005 68 5 8 chr3 147573295 147573951 -12025832 + L1_Mus1 LINE L1 5914 6567 0 1 1710 243 335 72 57 chr3 147573951 147574042 -12025741 - RLTR12B LTR ERVK -440 88 5 1 1710 253 376 47 0 chr3 147574203 147574352 -12025431 + L2a LINE L2 3266 3421 -5 1 1710 1211 264 92 2 chr3 147576690 147577093 -12022690 - Charlie2b DNA MER1_type -563 2219 1781 1 1710 671 318 50 20 chr3 147577205 147577404 -12022379 + B4A SINE B4 88 292 0 1 1710 345 62 0 0 chr3 147577422 147577470 -12022313 + (CA)n Simple_repeat Simple_repeat 1 48 0 1 1710 381 93 0 0 chr3 147577470 147577523 -12022260 + (TGGA)n Simple_repeat Simple_repeat 4 57 0 1 1710 312 206 16 0 chr3 147577744 147577807 -12021976 - HAL1-3A_ME LINE L1 -819 2039 1976 1 1710 942 155 0 0 chr3 147577822 147578198 -12021585 + (TG)n Simple_repeat Simple_repeat 1 376 0 1 1710 1549 231 76 23 chr3 147578507 147578902 -12020881 - MTD LTR MaLR -3 416 1 1 1710 589 339 38 36 chr3 147579553 147579910 -12019873 - MLT1E LTR MaLR -4 649 265 1 1710 627 319 81 39 chr3 147580139 147580397 -12019386 - B4 SINE B4 -14 278 10 1 1710 342 123 0 0 chr3 147581011 147581068 -12018715 + (GAAA)n Simple_repeat Simple_repeat 2 58 0 1 1710 789 11 0 0 chr3 147581364 147581454 -12018329 + (GAA)n Simple_repeat Simple_repeat 2 91 0 1 1710 1100 279 74 40 chr3 147584368 147584672 -12015111 + MTEb LTR MaLR 17 333 -46 1 1710 732 54 0 0 chr3 147584672 147584765 -12015018 + (TTCC)n Simple_repeat Simple_repeat 1 93 0 1 1710 1100 279 74 40 chr3 147584765 147584811 -12014972 + MTEb LTR MaLR 334 379 0 1 1710 185 349 0 57 chr3 147584962 147585050 -12014733 + MIRb SINE MIR 102 184 -84 1 1710 462 261 114 104 chr3 147585196 147585330 -12014453 - MLT1E3 LTR MaLR -82 542 397 1 1710 5128 35 2 0 chr3 147585330 147585935 -12013848 + L1Md_T LINE L1 5977 6582 0 1 1710 462 261 114 104 chr3 147585935 147586001 -12013782 - MLT1E3 LTR MaLR -228 396 340 1 1710 227 313 0 78 chr3 147586253 147586343 -12013440 - MLT1E3 LTR MaLR -540 84 2 1 1711 701 300 17 91 chr3 147587711 147588008 -12011775 - B4A SINE B4 0 292 18 1 1711 195 100 0 0 chr3 147588203 147588233 -12011550 + (TTTTTG)n Simple_repeat Simple_repeat 5 34 0 1 1711 1063 115 0 0 chr3 147588441 147588589 -12011194 + B1_Mus1 SINE Alu 1 148 0 1 1711 843 29 0 0 chr3 147588630 147588732 -12011051 + (GGAA)n Simple_repeat Simple_repeat 3 104 0 1 1711 189 74 0 0 chr3 147588984 147589011 -12010772 + (GA)n Simple_repeat Simple_repeat 2 28 0 1 1711 238 299 0 0 chr3 147591148 147591215 -12008568 - ID4_ SINE ID -16 67 1 1 1711 363 340 142 44 chr3 147592248 147592565 -12007218 + ORR1E LTR MaLR 3 350 -9 1 1711 201 74 0 0 chr3 147593653 147593680 -12006103 + (A)n Simple_repeat Simple_repeat 1 27 0 1 1711 2104 177 72 3 chr3 147594916 147595302 -12004481 - MTC LTR MaLR -8 413 1 1 1711 968 276 114 30 chr3 147595389 147595722 -12004061 + MTEb LTR MaLR 15 375 -4 1 1711 192 40 0 0 chr3 147596406 147596431 -12003352 + (CAT)n Simple_repeat Simple_repeat 1 25 0 1 1711 225 245 0 0 chr3 147596852 147596901 -12002882 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 1711 381 43 0 0 chr3 147596910 147596957 -12002826 + (TAA)n Simple_repeat Simple_repeat 2 48 0 1 1711 634 309 10 5 chr3 147597195 147597390 -12002393 + RMER30 DNA MER1_type 6 201 -1 1 1711 53 0 0 0 chr3 147597413 147597466 -12002317 + AT_rich Low_complexity Low_complexity 1 53 0 1 1711 357 86 0 0 chr3 147597827 147597885 -12001898 + (CTTTG)n Simple_repeat Simple_repeat 2 59 0 1 1711 1189 29 0 0 chr3 147597885 147598024 -12001759 - B1_Mus1 SINE Alu -9 139 1 1 1711 607 281 239 56 chr3 147598870 147599138 -12000645 + MTEa LTR MaLR 6 322 -57 1 1711 186 43 0 0 chr3 147599144 147599167 -12000616 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1 1711 4454 57 0 3 chr3 147599260 147599824 -11999959 - L1Md_F2 LINE L1 0 6582 6021 1 1711 207 0 0 0 chr3 147599886 147599909 -11999874 + (TTTTC)n Simple_repeat Simple_repeat 3 25 0 1 1711 795 195 0 63 chr3 147599952 147600111 -11999672 - B1_Mur4 SINE Alu 0 150 2 1 1711 189 94 0 0 chr3 147601025 147601057 -11998726 + (CAAAAA)n Simple_repeat Simple_repeat 2 33 0 1 1711 522 0 0 0 chr3 147601128 147601186 -11998597 + (TAAA)n Simple_repeat Simple_repeat 4 61 0 1 1711 585 267 18 47 chr3 147602021 147602144 -11997639 + RSINE1 SINE B4 2 124 -41 1 1711 297 0 0 0 chr3 147602144 147602177 -11997606 + (CA)n Simple_repeat Simple_repeat 2 34 0 1 1711 585 267 18 47 chr3 147602177 147602222 -11997561 + RSINE1 SINE B4 125 165 0 1 1711 198 192 0 0 chr3 147602594 147602646 -11997137 + GA-rich Low_complexity Low_complexity 2 53 0 1 1711 331 354 12 47 chr3 147602715 147602887 -11996896 + MIRb SINE MIR 28 193 -75 1 1711 387 264 50 24 chr3 147603415 147603628 -11996155 - L1MA4 LINE L1 -289 6002 5777 1 1711 519 123 0 0 chr3 147603637 147603718 -11996065 + (TA)n Simple_repeat Simple_repeat 1 81 0 1 1711 448 310 14 5 chr3 147603718 147603929 -11995854 - L1MA4 LINE L1 -498 5793 5581 1 1711 610 211 39 8 chr3 147603929 147604058 -11995725 + MT2A LTR ERVL 1 133 -400 1 1711 366 265 9 29 chr3 147604029 147604134 -11995649 + MT2A LTR ERVL 73 175 -358 1 1711 253 222 0 139 chr3 147604196 147604311 -11995472 + MT2A LTR ERVL 419 517 -16 1 1711 1010 129 64 6 chr3 147604335 147604507 -11995276 + URR1A DNA MER1_type 45 226 0 1 1711 501 243 304 67 chr3 147604606 147604912 -11994871 - MTEa LTR MaLR 0 379 1 1 1711 355 299 19 19 chr3 147604937 147605097 -11994686 - L1MA4 LINE L1 -853 5290 5131 1 1711 206 57 57 0 chr3 147605697 147605732 -11994051 + (TCTG)n Simple_repeat Simple_repeat 2 38 0 1 1711 189 157 0 67 chr3 147605733 147605808 -11993975 + CT-rich Low_complexity Low_complexity 5 74 0 1 1711 555 330 35 5 chr3 147607392 147607593 -11992190 - MLT-int LTR MaLR -1255 480 274 1 1711 260 260 45 39 chr3 147608037 147608133 -11991650 - ID4 SINE ID -51 101 5 1 1711 666 246 165 28 chr3 147608618 147608873 -11990910 + B4A SINE B4 1 290 -2 1 1711 291 28 0 0 chr3 147608886 147608922 -11990861 + (CA)n Simple_repeat Simple_repeat 1 36 0 1 1711 201 174 0 21 chr3 147609028 147609075 -11990708 + A-rich Low_complexity Low_complexity 2 47 0 1 1711 1210 326 117 31 chr3 147609110 147610297 -11989486 - Charlie1a DNA MER1_type -93 1362 1 1 1711 414 328 72 21 chr3 147610798 147611036 -11988747 - L3b LINE CR1 -285 4223 3961 1 1711 546 220 7 18 chr3 147614842 147614987 -11984796 - ORR1A3 LTR MaLR 0 421 256 1 1711 387 149 0 0 chr3 147614987 147615054 -11984729 + MERVL_2A-int LTR ERVL 5272 5338 -423 1 1711 378 151 13 40 chr3 147615113 147615189 -11984594 - ORR1A3-int LTR MaLR -1323 640 567 1 1711 430 100 170 0 chr3 147615191 147615291 -11984492 - MERVL_2A-int LTR ERVL -135 5626 5510 1 1711 1066 234 57 33 chr3 147615438 147615770 -11984013 - RMER17C LTR ERVK -70 340 1 1 1711 354 169 0 0 chr3 147615778 147615849 -11983934 - ORR1A3 LTR MaLR -275 71 1 1 1711 359 276 0 0 chr3 147616630 147616706 -11983077 + RSINE1 SINE B4 5 80 -85 1 1711 258 32 0 0 chr3 147617442 147617473 -11982310 + (TC)n Simple_repeat Simple_repeat 2 32 0 1 1711 480 214 0 0 chr3 147617474 147617591 -11982192 + (TATG)n Simple_repeat Simple_repeat 4 120 0 1 1711 654 196 7 21 chr3 147617618 147617759 -11982024 - MT2B LTR ERVL -459 142 4 1 1711 559 215 136 25 chr3 147617850 147618004 -11981779 + MTE-int LTR MaLR 1356 1527 -53 1 1711 542 339 104 56 chr3 147618004 147618342 -11981441 + ORR1E LTR MaLR 1 354 -5 1 1711 335 233 117 168 chr3 147618458 147618496 -11981287 - B2_Mm2 SINE B2 -3 192 159 1 1711 396 0 0 0 chr3 147618496 147618540 -11981243 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 1711 629 233 117 168 chr3 147618540 147618697 -11981086 - B3A SINE B2 -23 175 7 1 1711 2454 202 112 11 chr3 147619187 147619707 -11980076 + RMER15 LTR ERVL 1 572 -3 1 1711 400 232 11 0 chr3 147620055 147620232 -11979551 + (TG)n Simple_repeat Simple_repeat 2 180 0 1 1711 299 256 64 0 chr3 147621931 147622009 -11977774 + RMER30 DNA MER1_type 1 83 -119 1 1711 532 262 215 23 chr3 147623599 147623818 -11975965 + MLT1A0 LTR MaLR 34 294 -71 1 1711 306 0 0 0 chr3 147623818 147623852 -11975931 + (CA)n Simple_repeat Simple_repeat 2 35 0 1 1711 941 323 147 51 chr3 147624051 147624703 -11975080 + MLT-int LTR MaLR 172 886 -849 1 1711 189 94 0 0 chr3 147626214 147626246 -11973537 + (CAA)n Simple_repeat Simple_repeat 2 33 0 1 1711 354 23 0 0 chr3 147628123 147628166 -11971617 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 1711 22 35 0 0 chr3 147632039 147632068 -11967715 + AT_rich Low_complexity Low_complexity 1 29 0 1 1711 222 37 0 0 chr3 147633534 147633561 -11966222 + (TGAA)n Simple_repeat Simple_repeat 2 28 0 1 1711 375 154 0 0 chr3 147633639 147633704 -11966079 + (CAT)n Simple_repeat Simple_repeat 2 66 0 1 1711 252 0 0 0 chr3 147634067 147634095 -11965688 + (T)n Simple_repeat Simple_repeat 1 28 0 1 1711 288 200 0 0 chr3 147634119 147634189 -11965594 + (TG)n Simple_repeat Simple_repeat 2 71 0 1 1711 387 41 0 0 chr3 147634189 147634238 -11965545 + (GA)n Simple_repeat Simple_repeat 1 49 0 1 1711 405 39 0 0 chr3 147634247 147634298 -11965485 + (TA)n Simple_repeat Simple_repeat 1 51 0 1 1711 180 0 0 0 chr3 147634748 147634768 -11965015 + (G)n Simple_repeat Simple_repeat 1 20 0 1 1711 369 0 0 0 chr3 147635245 147635286 -11964497 + (CA)n Simple_repeat Simple_repeat 1 41 0 1 1711 639 0 0 0 chr3 147637383 147637454 -11962329 + (GAAA)n Simple_repeat Simple_repeat 4 74 0 1 1711 490 327 46 0 chr3 147639509 147639704 -11960079 + MIR SINE MIR 32 242 -26 1 1711 926 136 227 5 chr3 147640292 147640477 -11959306 + URR1A DNA MER1_type 1 226 0 1 1711 396 0 0 0 chr3 147640503 147640547 -11959236 + (TA)n Simple_repeat Simple_repeat 2 45 0 1 1711 600 295 71 9 chr3 147641577 147641789 -11957994 - B4A SINE B4 -67 225 1 1 1711 456 283 53 9 chr3 147643560 147643674 -11956109 - B1F2 SINE Alu -7 142 24 1 1711 291 114 0 0 chr3 147643739 147643783 -11956000 + (CATA)n Simple_repeat Simple_repeat 2 45 0 1 1711 237 33 0 0 chr3 147643783 147643813 -11955970 + (TG)n Simple_repeat Simple_repeat 2 31 0 2 1711 190 255 118 0 chr3 147644486 147644537 -11955246 + MIR SINE MIR 93 149 -59 2 1711 340 340 38 32 chr3 147646562 147646575 -11953208 - RSINE1 SINE B4 -5 160 148 2 1711 252 0 0 0 chr3 147646575 147646603 -11953180 + (TG)n Simple_repeat Simple_repeat 1 28 0 2 1711 340 340 38 32 chr3 147646603 147646747 -11953036 - RSINE1 SINE B4 -18 147 2 2 1711 526 315 44 37 chr3 147646855 147646869 -11952914 - B4A SINE B4 -9 283 270 2 1711 479 17 0 16 chr3 147646869 147646930 -11952853 + (TG)n Simple_repeat Simple_repeat 2 61 0 2 1711 526 315 44 37 chr3 147646930 147647185 -11952598 - B4A SINE B4 -23 269 12 2 1711 785 241 79 20 chr3 147647204 147647407 -11952376 - B3 SINE B2 0 216 2 2 1711 423 0 0 0 chr3 147648448 147648495 -11951288 + (CA)n Simple_repeat Simple_repeat 1 47 0 2 1711 1404 38 0 10 chr3 147648905 147649198 -11950585 + (CA)n Simple_repeat Simple_repeat 1 290 0 2 1711 363 60 0 0 chr3 147650678 147650728 -11949055 + (CA)n Simple_repeat Simple_repeat 1 50 0 2 1711 229 261 241 9 chr3 147650794 147650910 -11948873 + B3A SINE B2 10 152 -46 2 1711 772 252 35 0 chr3 147651415 147651613 -11948170 - B3 SINE B2 -9 207 3 2 1711 290 316 90 34 chr3 147652671 147652904 -11946879 - Tigger15a DNA TcMar -3 712 467 2 1711 1275 74 0 0 chr3 147655284 147655460 -11944323 + (TG)n Simple_repeat Simple_repeat 2 177 0 2 1711 180 0 0 0 chr3 147655460 147655479 -11944304 + (TCTG)n Simple_repeat Simple_repeat 1 20 0 2 1711 21 36 0 0 chr3 147655778 147655806 -11943977 + AT_rich Low_complexity Low_complexity 1 28 0 2 1711 185 94 31 0 chr3 147656493 147656525 -11943258 + (TC)n Simple_repeat Simple_repeat 2 34 0 2 1711 360 0 0 0 chr3 147656738 147656778 -11943005 + (TG)n Simple_repeat Simple_repeat 1 40 0 2 1711 383 351 18 0 chr3 147656791 147656905 -11942878 - RSINE1 SINE B4 -3 162 47 2 1711 29 70 0 0 chr3 147657436 147657493 -11942290 + AT_rich Low_complexity Low_complexity 1 57 0 2 1711 3612 216 78 41 chr3 147658323 147659666 -11940117 + L1_Mur3 LINE L1 122 1518 -4362 2 1711 408 169 0 0 chr3 147659666 147659743 -11940040 + GA-rich Low_complexity Low_complexity 4 80 0 2 1711 1453 159 5 125 chr3 147659743 147660175 -11939608 + L1_Mur3 LINE L1 1498 1877 -4003 2 1711 276 53 0 0 chr3 147660705 147660743 -11939040 + (T)n Simple_repeat Simple_repeat 1 38 0 2 1711 582 271 57 61 chr3 147661601 147661813 -11937970 + B3 SINE B2 2 212 -4 2 1711 334 189 50 50 chr3 147662873 147662973 -11936810 - RLTR42-int LTR ERVK -4155 1367 1268 2 1711 227 254 36 0 chr3 147663290 147663345 -11936438 - ID_B1 SINE B4 -21 203 147 2 1711 44 46 0 0 chr3 147663565 147663630 -11936153 + AT_rich Low_complexity Low_complexity 1 65 0 2 1711 924 157 55 22 chr3 147663777 147663959 -11935824 + B2_Mm2 SINE B2 1 188 -7 2 1711 780 197 0 26 chr3 147664022 147664173 -11935610 - B1_Mur3 SINE Alu 0 149 3 2 1711 334 304 52 44 chr3 147665454 147665630 -11934153 + MLT1A1 LTR MaLR 159 345 -29 2 1711 583 221 15 0 chr3 147666766 147666897 -11932886 + B1F2 SINE Alu 1 133 -16 2 1711 750 296 0 23 chr3 147667014 147667190 -11932593 + B3A SINE B2 1 172 -26 2 1711 212 239 56 14 chr3 147667308 147667380 -11932403 + MIRb SINE MIR 64 138 -130 2 1711 21 36 0 0 chr3 147668002 147668030 -11931753 + AT_rich Low_complexity Low_complexity 1 28 0 2 1711 39 22 0 0 chr3 147668661 147668707 -11931076 + AT_rich Low_complexity Low_complexity 1 46 0 2 1711 251 240 24 107 chr3 147670072 147670156 -11929627 - RSINE1 SINE B4 -2 163 87 2 1711 207 0 0 0 chr3 147670837 147670860 -11928923 + (TA)n Simple_repeat Simple_repeat 1 23 0 2 1711 308 386 68 90 chr3 147672806 147673250 -11926533 + LTR16C LTR ERVL 4 437 -52 2 1711 381 22 0 0 chr3 147673497 147673543 -11926240 + (TG)n Simple_repeat Simple_repeat 1 46 0 2 1711 1496 219 63 44 chr3 147674372 147674596 -11925187 + ORR1D1 LTR MaLR 1 245 -129 2 1711 198 0 0 0 chr3 147674596 147674618 -11925165 + (CCTG)n Simple_repeat Simple_repeat 4 25 0 2 1711 1496 219 63 44 chr3 147674618 147674760 -11925023 + ORR1D1 LTR MaLR 246 373 -1 2 1711 184 261 68 116 chr3 147676134 147676281 -11923502 + MIR SINE MIR 57 196 -66 2 1711 246 95 0 0 chr3 147677195 147677237 -11922546 + (CA)n Simple_repeat Simple_repeat 2 43 0 2 1711 347 256 231 8 chr3 147679300 147679430 -11920353 - Lx8 LINE L1 -286 7187 7029 2 1711 181 242 73 29 chr3 147679912 147679980 -11919803 - L2a LINE L2 -339 3087 3017 2 1711 531 195 141 45 chr3 147680253 147680409 -11919374 - RLTR26 LTR ERVK -471 171 1 2 1711 262 372 65 40 chr3 147680409 147680608 -11919175 - L2a LINE L2 -539 2880 2677 2 1711 293 0 27 0 chr3 147680761 147680798 -11918985 + (TTTTG)n Simple_repeat Simple_repeat 2 39 0 2 1711 252 0 0 0 chr3 147681249 147681277 -11918506 + (T)n Simple_repeat Simple_repeat 1 28 0 2 1711 252 86 0 0 chr3 147681316 147681351 -11918432 + (TTTA)n Simple_repeat Simple_repeat 3 37 0 2 1711 349 302 0 33 chr3 147681515 147681635 -11918148 - MTEa LTR MaLR -2 377 262 2 1711 1666 248 114 18 chr3 147681877 147682447 -11917336 + L1_Mur3 LINE L1 112 736 -6992 2 1711 829 146 7 0 chr3 147682450 147682587 -11917196 - L1_Mus2 LINE L1 -377 6189 6052 2 1711 3790 75 4 0 chr3 147682584 147683147 -11916636 + L1_Mus2 LINE L1 5501 6065 -501 2 1711 2495 189 33 52 chr3 147683307 147683921 -11915862 + L1_Mur3 LINE L1 4879 5480 -400 2 1711 200 182 55 0 chr3 147683936 147683991 -11915792 + (CAA)n Simple_repeat Simple_repeat 3 60 0 2 1711 3112 241 18 23 chr3 147684003 147684382 -11915401 + Lx6 LINE L1 6740 7114 -346 2 1711 1238 49 6 0 chr3 147684382 147684544 -11915239 + (TG)n Simple_repeat Simple_repeat 2 164 0 2 1711 3112 241 18 23 chr3 147684544 147684873 -11914910 + Lx6 LINE L1 7115 7445 -15 2 1711 923 123 7 0 chr3 147684874 147685028 -11914755 + (GAA)n Simple_repeat Simple_repeat 1 155 0 2 1711 239 252 200 42 chr3 147686520 147686640 -11913143 - B1F2 SINE Alu -8 141 3 2 1711 243 0 0 0 chr3 147687531 147687558 -11912225 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2 1711 344 113 28 0 chr3 147687568 147687639 -11912144 + (TCTG)n Simple_repeat Simple_repeat 2 74 0 2 1711 237 171 98 0 chr3 147687667 147687708 -11912075 - RSINE1 SINE B4 -26 139 95 2 1711 579 265 155 16 chr3 147687809 147688131 -11911652 - Lx8 LINE L1 -2 7471 7105 2 1711 1478 262 103 5 chr3 147688332 147688712 -11911071 + MTD LTR MaLR 3 419 0 2 1711 21 0 0 0 chr3 147689397 147689418 -11910365 + AT_rich Low_complexity Low_complexity 1 21 0 2 1711 7838 11 4 0 chr3 147690365 147691184 -11908599 - RLTR13B2 LTR ERVK 0 822 1 2 1711 21 36 0 0 chr3 147692474 147692502 -11907281 + AT_rich Low_complexity Low_complexity 1 28 0 2 1711 225 339 0 33 chr3 147692574 147692696 -11907087 + GA-rich Low_complexity Low_complexity 3 120 0 2 1711 235 298 0 23 chr3 147692599 147692685 -11907098 + G-rich Low_complexity Low_complexity 4 87 0 2 1711 4720 122 9 3 chr3 147692726 147693391 -11906392 - Lx2 LINE L1 -2 6995 6327 2 1711 795 295 75 0 chr3 147693420 147693620 -11906163 - B3 SINE B2 0 216 2 2 1711 204 244 24 0 chr3 147694113 147694154 -11905629 - L2c LINE L2 -57 3330 3289 2 1711 486 96 0 0 chr3 147694293 147694366 -11905417 + (TG)n Simple_repeat Simple_repeat 2 74 0 2 1711 225 176 0 89 chr3 147695009 147695065 -11904718 - RSINE1 SINE B4 0 165 115 2 1711 236 356 48 0 chr3 147698038 147698184 -11901599 - MIRb SINE MIR -23 245 93 2 1711 410 211 104 73 chr3 147698812 147698976 -11900807 - RMER1A Other Other -4 1026 858 2 1711 216 0 0 0 chr3 147698976 147699000 -11900783 + (CAAAC)n Simple_repeat Simple_repeat 1 24 0 2 1711 758 225 243 11 chr3 147699000 147699390 -11900393 - RMER1B Other Other -420 646 244 2 1711 1600 169 80 13 chr3 147699913 147700224 -11899559 + ORR1B1 LTR MaLR 1 332 -62 2 1711 26 0 0 0 chr3 147700224 147700250 -11899533 + AT_rich Low_complexity Low_complexity 1 26 0 2 1711 423 0 0 0 chr3 147700292 147700339 -11899444 + (TCTA)n Simple_repeat Simple_repeat 4 50 0 2 1711 235 179 0 0 chr3 147700351 147700390 -11899393 + ORR1B1 LTR MaLR 318 356 -11 2 1711 414 304 48 0 chr3 147701153 147701278 -11898505 + RSINE1 SINE B4 3 133 -32 2 1711 198 0 0 0 chr3 147701731 147701753 -11898030 + (CAAAAA)n Simple_repeat Simple_repeat 2 23 0 2 1711 357 24 0 0 chr3 147701884 147701926 -11897857 + (GGAA)n Simple_repeat Simple_repeat 3 44 0 2 1711 1049 91 11 22 chr3 147701929 147702108 -11897675 + (GGAAA)n Simple_repeat Simple_repeat 4 180 0 2 1711 3601 35 2 0 chr3 147702109 147702504 -11897279 + MTA_Mm LTR MaLR 1 396 0 2 1711 645 119 0 0 chr3 147702506 147702607 -11897176 + (GGAA)n Simple_repeat Simple_repeat 3 103 0 2 1711 361 384 7 0 chr3 147702927 147703073 -11896710 + MER45A DNA Tip100 3 149 -29 2 1711 204 125 0 0 chr3 147703100 147703132 -11896651 + (TTTTC)n Simple_repeat Simple_repeat 4 35 0 2 1711 887 34 86 0 chr3 147703132 147703249 -11896534 - B1_Mus2 SINE Alu 0 147 21 2 1711 1246 76 1 2 chr3 147704344 147704531 -11895252 - L1_Mus4 LINE L1 -201 6453 6268 2 1711 2984 93 2 0 chr3 147704529 147704928 -11894855 + L1_Mm LINE L1 5360 5759 -124 2 1711 311 298 102 65 chr3 147705598 147705818 -11893965 - MIRb SINE MIR 0 262 38 2 1711 2205 103 115 3 chr3 147707203 147707542 -11892241 - Lx2 LINE L1 -1 6996 6620 2 1711 706 151 0 54 chr3 147707550 147707697 -11892086 - Lx2 LINE L1 -936 6061 5923 2 1711 9607 159 11 7 chr3 147707697 147709417 -11890366 + Lx3B LINE L1 4190 5923 -1050 2 1711 345 297 104 55 chr3 147709545 147709709 -11890074 + MLT1D LTR MaLR 326 497 -8 2 1711 21 0 0 0 chr3 147709762 147709783 -11890000 + AT_rich Low_complexity Low_complexity 1 21 0 2 1711 422 259 17 33 chr3 147709988 147710108 -11889675 - PB1D9 SINE Alu 0 120 3 2 1711 493 219 208 52 chr3 147710142 147710296 -11889487 - B3 SINE B2 -30 186 9 2 1711 401 116 0 14 chr3 147711636 147711706 -11888077 + (GAAAA)n Simple_repeat Simple_repeat 2 70 0 2 1711 21 36 0 0 chr3 147711948 147711976 -11887807 + AT_rich Low_complexity Low_complexity 1 28 0 2 1711 6344 65 17 0 chr3 147712167 147712983 -11886800 - L1_Mm LINE L1 -622 5261 4432 2 1711 2737 50 12 6 chr3 147712978 147713322 -11886461 + L1_Mm LINE L1 5242 5616 -552 2 1711 8178 57 8 6 chr3 147713322 147714312 -11885471 + L1Md_F2 LINE L1 5588 6579 -3 2 1711 1129 266 28 20 chr3 147714312 147714348 -11885435 + L1_Mm LINE L1 5617 5654 -514 2 1711 26 30 0 0 chr3 147716053 147716086 -11883697 + AT_rich Low_complexity Low_complexity 1 33 0 3 1711 3825 85 4 0 chr3 147716682 147717162 -11882621 - L1_Mus2 LINE L1 0 6566 6085 3 1712 444 326 85 30 chr3 147719002 147719201 -11880582 + MER58A DNA MER1_type 2 211 -13 3 1712 423 0 0 0 chr3 147719421 147719468 -11880315 + (GA)n Simple_repeat Simple_repeat 1 47 0 3 1712 602 194 155 0 chr3 147720768 147720897 -11878886 + URR1A DNA MER1_type 1 149 -77 3 1712 292 365 13 52 chr3 147721380 147721533 -11878250 - MER20 DNA MER1_type -49 170 24 3 1712 365 291 48 0 chr3 147721886 147721989 -11877794 + B3 SINE B2 102 209 -7 3 1712 1175 54 7 0 chr3 147722398 147722545 -11877238 + B1_Mus1 SINE Alu 1 148 0 3 1712 349 164 0 29 chr3 147722826 147722895 -11876888 + HAL1-3A_ME LINE L1 1976 2042 -816 3 1712 199 295 30 90 chr3 147724738 147724872 -11874911 + L2c LINE L2 3254 3379 -8 3 1712 738 46 0 18 chr3 147725762 147725873 -11873910 - L1Md_F3 LINE L1 -14 6570 6462 3 1712 2749 58 20 135 chr3 147725873 147726333 -11873450 + L1Md_F3 LINE L1 6164 6570 -14 3 1712 635 55 1 1 chr3 147726340 147726429 -11873354 + L1Md_F2 LINE L1 6270 6358 -209 3 1712 464 175 10 0 chr3 147726564 147726661 -11873122 + CT-rich Low_complexity Low_complexity 1 98 0 3 1712 327 250 11 22 chr3 147726661 147726675 -11873108 + polypyrimidine Low_complexity Low_complexity 78 91 0 3 1712 996 133 0 16 chr3 147726675 147726858 -11872925 + (TCC)n Simple_repeat Simple_repeat 1 180 0 3 1712 327 250 11 22 chr3 147726858 147726877 -11872906 + polypyrimidine Low_complexity Low_complexity 60 77 0 3 1712 942 96 19 0 chr3 147726877 147727034 -11872749 + (TTC)n Simple_repeat Simple_repeat 1 160 0 3 1712 327 250 11 22 chr3 147727034 147727108 -11872675 + polypyrimidine Low_complexity Low_complexity 1 73 0 3 1712 1166 54 0 20 chr3 147728321 147728471 -11871312 + B1_Mus1 SINE Alu 2 148 0 3 1712 26 50 0 0 chr3 147729332 147729372 -11870411 + AT_rich Low_complexity Low_complexity 1 40 0 3 1712 1377 111 62 0 chr3 147730430 147730655 -11869128 - L1_Mus3 LINE L1 -2 6636 6398 3 1712 351 153 4 163 chr3 147731392 147731619 -11868164 + RMER17C LTR ERVK 88 278 -132 3 1712 185 94 30 30 chr3 147734172 147734205 -11865578 + L3 LINE CR1 2293 2325 -2164 3 1712 21 57 0 0 chr3 147734382 147734417 -11865366 + AT_rich Low_complexity Low_complexity 1 35 0 3 1712 27 0 0 0 chr3 147734776 147734803 -11864980 + AT_rich Low_complexity Low_complexity 1 27 0 3 1712 266 215 77 0 chr3 147735044 147735109 -11864674 + B2_Mm2 SINE B2 1 70 -125 3 1712 460 335 78 52 chr3 147735933 147736242 -11863541 - MTEa LTR MaLR -35 344 28 3 1712 2162 107 66 42 chr3 147736572 147736951 -11862832 + Lx LINE L1 6234 6621 -33 3 1712 329 43 21 0 chr3 147736951 147736998 -11862785 + (TAAA)n Simple_repeat Simple_repeat 1 48 0 3 1712 5800 68 0 11 chr3 147737099 147737863 -11861920 + L1_Mus4 LINE L1 5868 6623 -13 3 1712 252 59 0 0 chr3 147737869 147737903 -11861880 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 3 1712 318 346 16 32 chr3 147737934 147738122 -11861661 + L1M5 LINE L1 5622 5806 -367 3 1712 619 338 14 0 chr3 147739345 147739558 -11860225 + B3 SINE B2 1 216 0 3 1712 2175 79 0 7 chr3 147739561 147739853 -11859930 + L1_Mur1 LINE L1 5339 5628 -258 3 1712 471 302 110 32 chr3 147739993 147740239 -11859544 - Lx8 LINE L1 -312 7161 6897 3 1712 409 321 30 6 chr3 147740717 147740883 -11858900 + Tigger6a DNA MER2_type 2 171 -912 3 1712 550 97 17 26 chr3 147740885 147741001 -11858782 + (TA)n Simple_repeat Simple_repeat 2 116 0 3 1712 1328 271 101 31 chr3 147741035 147741580 -11858203 + Tigger6a DNA MER2_type 217 799 -284 3 1712 1658 215 41 8 chr3 147741687 147742178 -11857605 - Lx4B LINE L1 -19 6981 6433 3 1712 216 48 71 0 chr3 147742213 147742255 -11857528 + (TC)n Simple_repeat Simple_repeat 2 46 0 3 1712 313 346 0 15 chr3 147742256 147742391 -11857392 + (TG)n Simple_repeat Simple_repeat 1 133 0 3 1712 262 307 87 45 chr3 147742406 147742672 -11857111 - B4A SINE B4 -15 277 1 3 1712 371 228 61 9 chr3 147742686 147742801 -11856982 - RMER1C Other Other -3 1339 1219 3 1712 3260 33 2 2 chr3 147742848 147743244 -11856539 - L1Md_T LINE L1 0 6582 6187 3 1712 418 232 92 46 chr3 147743257 147743474 -11856309 + Tigger6a DNA MER2_type 857 1083 0 3 1712 345 339 124 28 chr3 147744465 147744747 -11855036 - LTR16B1 LTR ERVL -167 313 5 3 1712 242 379 62 24 chr3 147745020 147745231 -11854552 + L1_Mur3 LINE L1 5526 5744 -136 3 1712 22 0 0 0 chr3 147745870 147745892 -11853891 + AT_rich Low_complexity Low_complexity 1 22 0 3 1712 474 159 0 0 chr3 147746095 147746183 -11853600 + (CA)n Simple_repeat Simple_repeat 2 89 0 3 1712 410 259 115 24 chr3 147746341 147746495 -11853288 - MTE2a LTR MaLR -8 371 210 3 1712 1296 258 148 12 chr3 147746555 147747068 -11852715 - Lx8 LINE L1 -25 7448 6866 3 1712 292 250 22 33 chr3 147747957 147748048 -11851735 - L1MEc LINE L1 -5651 749 660 3 1712 259 174 0 65 chr3 147748235 147748327 -11851456 + T-rich Low_complexity Low_complexity 2 87 0 3 1712 255 296 158 23 chr3 147748417 147748638 -11851145 - L1MEc LINE L1 -6074 326 76 3 1712 206 299 110 44 chr3 147749555 147749646 -11850137 + MIR SINE MIR 59 155 -113 3 1712 229 336 44 35 chr3 147750271 147750499 -11849284 + L1MC5 LINE L1 7631 7860 -101 3 1712 318 342 25 0 chr3 147750577 147750697 -11849086 + MIR SINE MIR 111 233 -29 3 1712 526 337 0 6 chr3 147750794 147750976 -11848807 - L1MD1 LINE L1 -64 6178 5998 3 1712 716 309 34 10 chr3 147751011 147751309 -11848474 - L1MD1 LINE L1 -338 5904 5600 3 1712 425 218 30 22 chr3 147751584 147751716 -11848067 + B3A SINE B2 1 132 -63 3 1712 2769 105 7 5 chr3 147751844 147752255 -11847528 + L1_Mus3 LINE L1 6227 6638 0 3 1712 48 0 0 0 chr3 147752568 147752616 -11847167 + AT_rich Low_complexity Low_complexity 1 48 0 3 1712 227 97 0 0 chr3 147752679 147752710 -11847073 + L1_Mus3 LINE L1 6461 6491 -147 3 1712 1110 14 21 0 chr3 147754103 147754247 -11845536 + (TAGA)n Simple_repeat Simple_repeat 4 150 0 3 1712 258 32 0 0 chr3 147757831 147757862 -11841921 + (TC)n Simple_repeat Simple_repeat 2 32 0 3 1712 207 100 0 0 chr3 147757864 147757894 -11841889 + (TG)n Simple_repeat Simple_repeat 2 31 0 3 1712 194 305 29 95 chr3 147757908 147758013 -11841770 + L3 LINE CR1 4165 4262 -227 3 1712 558 257 63 111 chr3 147758375 147758764 -11841019 - RLTR12B LTR ERVK -11 557 175 3 1712 2875 207 62 5 chr3 147758774 147759371 -11840412 - Lx5 LINE L1 0 7050 6420 3 1712 559 238 1 3 chr3 147759380 147759510 -11840273 + Lx5 LINE L1 5837 5964 -1044 3 1712 2054 275 52 44 chr3 147759997 147760918 -11838865 - Lx5 LINE L1 -43 7417 6226 3 1712 1140 142 16 5 chr3 147761190 147761374 -11838409 - B2_Mm2 SINE B2 -8 187 2 3 1712 444 123 0 0 chr3 147761420 147761493 -11838290 + (TA)n Simple_repeat Simple_repeat 1 73 0 3 1712 278 50 25 0 chr3 147761493 147761533 -11838250 + (CA)n Simple_repeat Simple_repeat 1 41 0 3 1712 423 0 0 0 chr3 147761533 147761580 -11838203 + (GA)n Simple_repeat Simple_repeat 2 48 0 3 1712 689 314 65 35 chr3 147763098 147763557 -11836226 + L1M4 LINE L1 238 710 -5832 3 1712 198 0 0 0 chr3 147764585 147764607 -11835176 + (CA)n Simple_repeat Simple_repeat 1 22 0 3 1712 1430 267 186 19 chr3 147765231 147765773 -11834010 + Lx6 LINE L1 6802 7434 -26 3 1712 339 313 126 52 chr3 147766138 147766298 -11833485 + L1M4 LINE L1 3125 3296 -3348 3 1712 309 26 0 0 chr3 147766298 147766336 -11833447 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 3 1712 339 313 126 52 chr3 147766336 147766485 -11833298 + L1M4 LINE L1 3297 3457 -3187 3 1712 303 315 102 78 chr3 147766824 147767117 -11832666 + L1M4 LINE L1 4064 4363 -2281 3 1712 225 308 148 20 chr3 147767117 147767266 -11832517 + MLT1D LTR MaLR 1 168 -337 3 1712 330 306 226 28 chr3 147767548 147768123 -11831660 + L1M4 LINE L1 4391 5079 -1565 3 1712 1279 273 249 17 chr3 147768115 147768653 -11831130 + Lx8 LINE L1 6618 7280 -193 3 1712 623 312 5 59 chr3 147768699 147768903 -11830880 + B3A SINE B2 6 198 0 3 1712 232 273 0 49 chr3 147768947 147769028 -11830755 + Lx8 LINE L1 7387 7463 -10 3 1712 577 283 31 47 chr3 147769439 147769632 -11830151 - B3A SINE B2 -7 191 2 3 1712 1707 237 70 78 chr3 147774361 147774975 -11824808 + RMER19C LTR ERVK 3 611 0 3 1712 213 326 50 87 chr3 147776289 147776450 -11823333 + L2c LINE L2 3204 3358 -17 3 1712 594 142 37 19 chr3 147779363 147779471 -11820312 - Lx4A LINE L1 -260 6798 6689 3 1712 1941 155 3 3 chr3 147779920 147780231 -11819552 - RLTR10E LTR ERVK 0 311 1 3 1712 4090 122 9 1 chr3 147780231 147780912 -11818871 - IAPEY3-int LTR ERVK 0 7680 6965 3 1712 1325 146 102 0 chr3 147780912 147781138 -11818645 - IAP-d-int LTR ERVK -1287 5255 5007 3 1712 289 208 0 0 chr3 147781140 147781193 -11818590 - IAP-d-int LTR ERVK -6043 499 447 3 1712 274 265 0 0 chr3 147781210 147781278 -11818505 - IAPEY3-int LTR ERVK -6015 1566 1499 3 1712 313 291 17 8 chr3 147781339 147781457 -11818326 - IAPEY3-int LTR ERVK -5602 940 822 3 1712 1179 163 152 16 chr3 147781623 147781879 -11817904 - IAPEY3-int LTR ERVK -4803 603 313 3 1712 604 165 0 0 chr3 147781866 147781987 -11817796 - MMERVK10C-int LTR ERVK -6714 867 747 3 1712 2296 103 7 15 chr3 147781987 147782338 -11817445 - MMERVK10C-int LTR ERVK -7244 337 10 3 1712 1891 164 3 3 chr3 147782340 147782651 -11817132 - RLTR10E LTR ERVK 0 311 1 3 1712 1442 208 73 25 chr3 147783003 147783358 -11816425 + ORR1D1 LTR MaLR 1 372 -2 3 1712 594 65 0 32 chr3 147783401 147783496 -11816287 - Lx LINE L1 0 6654 6563 3 1712 438 103 15 0 chr3 147783499 147783567 -11816216 - Lx2B LINE L1 -316 6684 6616 3 1712 199 278 56 0 chr3 147784098 147784152 -11815631 + MIR SINE MIR 200 256 -6 3 1712 617 292 39 13 chr3 147784363 147784519 -11815264 + RSINE1 SINE B4 2 161 -4 3 1712 471 48 0 0 chr3 147784521 147784583 -11815200 + (CA)n Simple_repeat Simple_repeat 1 62 0 3 1712 336 64 0 0 chr3 147784587 147784634 -11815149 + (TCTA)n Simple_repeat Simple_repeat 4 50 0 3 1712 2937 82 17 10 chr3 147785694 147786112 -11813671 - BGLII LTR ERVK 0 421 1 3 1712 437 235 52 0 chr3 147786148 147786284 -11813499 + Lx9 LINE L1 7490 7632 -12 3 1712 325 272 136 0 chr3 147786344 147786469 -11813314 + B1_Mur1 SINE Alu 2 143 -6 3 1712 238 291 120 7 chr3 147787185 147787327 -11812456 - L1MD3 LINE L1 0 7995 7838 3 1712 310 287 64 0 chr3 147787610 147787704 -11812079 - L1MC4a LINE L1 -482 7400 7301 3 1712 488 241 73 0 chr3 147787709 147787846 -11811937 - L1M5 LINE L1 -2211 3935 3789 3 1712 402 272 0 10 chr3 147787846 147787950 -11811833 - Charlie7 DNA MER1_type -1015 1597 1495 3 1712 1011 320 63 8 chr3 147789431 147789812 -11809971 - Lx8 LINE L1 -523 6950 6549 4 1712 856 274 51 38 chr3 147789865 147790157 -11809626 + Lx8 LINE L1 6230 6525 -948 4 1712 281 282 68 0 chr3 147790940 147791043 -11808740 - Charlie1b DNA MER1_type -313 210 101 4 1712 26 50 0 0 chr3 147791246 147791286 -11808497 + AT_rich Low_complexity Low_complexity 1 40 0 4 1712 22 70 0 0 chr3 147792961 147793004 -11806779 + AT_rich Low_complexity Low_complexity 1 43 0 4 1712 3228 39 21 0 chr3 147793013 147793401 -11806382 + MTA_Mm LTR MaLR 1 396 0 4 1712 24 0 0 0 chr3 147793424 147793448 -11806335 + AT_rich Low_complexity Low_complexity 1 24 0 4 1712 530 269 106 23 chr3 147794181 147794398 -11805385 + ORR1E LTR MaLR 2 236 -123 4 1712 29 0 0 0 chr3 147794579 147794608 -11805175 + AT_rich Low_complexity Low_complexity 1 29 0 4 1712 320 0 25 0 chr3 147796325 147796365 -11803418 + (TA)n Simple_repeat Simple_repeat 2 42 0 4 1712 204 143 0 0 chr3 147796429 147796471 -11803312 + (CA)n Simple_repeat Simple_repeat 1 42 0 4 1712 759 37 28 0 chr3 147796721 147796828 -11802955 + (TCC)n Simple_repeat Simple_repeat 3 112 0 4 1712 3107 158 5 14 chr3 147796846 147797405 -11802378 - Lx2B LINE L1 -1 6999 6446 4 1712 246 407 42 50 chr3 147797721 147797919 -11801864 - L2a LINE L2 -254 3172 2970 4 1712 453 19 0 0 chr3 147797919 147797973 -11801810 + (CAAAC)n Simple_repeat Simple_repeat 3 56 0 4 1712 246 407 42 50 chr3 147797973 147798012 -11801771 - L2a LINE L2 -457 2969 2937 4 1712 394 297 101 0 chr3 147798480 147798699 -11801084 + L1M2 LINE L1 5056 5296 -847 4 1712 465 66 0 0 chr3 147799197 147799258 -11800525 + (TA)n Simple_repeat Simple_repeat 2 62 0 4 1712 282 368 39 45 chr3 147801541 147801762 -11798021 + B4A SINE B4 2 226 -66 4 1712 447 19 0 0 chr3 147801788 147801840 -11797943 + (CA)n Simple_repeat Simple_repeat 1 52 0 4 1712 452 56 28 0 chr3 147801842 147801913 -11797870 + (CAGAGA)n Simple_repeat Simple_repeat 4 76 0 4 1712 295 364 15 69 chr3 147802432 147802562 -11797221 - PB1 SINE Alu -2 125 3 4 1712 780 221 6 0 chr3 147805591 147805749 -11794034 + Lx9 LINE L1 6827 6985 -659 4 1712 1162 204 90 54 chr3 147805752 147805787 -11793996 + Lx9 LINE L1 7237 7263 -381 4 1712 837 96 0 0 chr3 147805787 147805912 -11793871 + (GGA)n Simple_repeat Simple_repeat 3 127 0 4 1712 1162 204 90 54 chr3 147805912 147806264 -11793519 + Lx9 LINE L1 7264 7638 -6 4 1712 579 40 0 0 chr3 147806721 147806795 -11792988 + (TG)n Simple_repeat Simple_repeat 2 75 0 4 1712 359 306 24 16 chr3 147806846 147806969 -11792814 - MT2A LTR ERVL -118 415 292 4 1712 309 295 74 61 chr3 147806992 147807229 -11792554 - MTEa LTR MaLR -118 261 1 4 1712 376 226 68 68 chr3 147807688 147807821 -11791962 + RLTR11B LTR ERVK 3 135 -318 4 1712 224 378 55 0 chr3 147807928 147808048 -11791735 + MIR SINE MIR 32 155 -113 4 1712 623 248 51 73 chr3 147808091 147808360 -11791423 - RLTR11B LTR ERVK -33 495 223 4 1712 870 10 0 0 chr3 147808434 147808533 -11791250 + (TTC)n Simple_repeat Simple_repeat 2 100 0 4 1712 1120 54 7 39 chr3 147808585 147808738 -11791045 - B1_Mus1 SINE Alu 0 148 1 4 1712 635 230 26 184 chr3 147808875 147809184 -11790599 - RLTR11B LTR ERVK -8 445 186 4 1712 1343 6 0 6 chr3 147809214 147809371 -11790412 + (TTC)n Simple_repeat Simple_repeat 2 157 0 4 1712 210 150 0 0 chr3 147809374 147809414 -11790369 + (TTTTTG)n Simple_repeat Simple_repeat 4 43 0 4 1712 39449 29 3 6 chr3 147809416 147815586 -11784197 - L1Md_T LINE L1 0 6582 439 4 1712 189 0 0 0 chr3 147815586 147815607 -11784176 + (T)n Simple_repeat Simple_repeat 1 21 0 4 1712 1099 70 7 27 chr3 147815609 147815756 -11784027 - B1_Mus1 SINE Alu -4 144 1 4 1712 378 0 0 0 chr3 147815809 147815851 -11783932 + (T)n Simple_repeat Simple_repeat 1 42 0 4 1712 289 268 67 39 chr3 147816882 147816901 -11782882 + L1MA5 LINE L1 6105 6123 -177 4 1712 2212 192 118 75 chr3 147816901 147817487 -11782296 + RMER19C LTR ERVK 1 611 0 4 1712 439 232 76 38 chr3 147817487 147817646 -11782137 + L1MA5 LINE L1 6124 6288 -12 4 1712 5390 58 1 0 chr3 147817706 147818384 -11781399 + L1Md_F3 LINE L1 4954 5634 -950 4 1712 410 143 13 0 chr3 147819004 147819081 -11780702 + (TA)n Simple_repeat Simple_repeat 2 79 0 4 1712 7052 112 23 17 chr3 147819083 147820367 -11779416 - Lx3A LINE L1 -264 6717 5434 4 1712 579 290 88 26 chr3 147821535 147821843 -11777940 + RLTR15 LTR ERVK 1 327 -32 4 1712 531 0 0 0 chr3 147821984 147822043 -11777740 + (GA)n Simple_repeat Simple_repeat 1 59 0 4 1712 350 259 52 81 chr3 147822697 147822869 -11776914 + RMER6-int LTR ERVK 1284 1450 -1727 4 1712 760 244 74 5 chr3 147823005 147823039 -11776744 + MYSERV-int LTR ERVK 1286 1319 -7640 4 1712 234 0 0 0 chr3 147823039 147823065 -11776718 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 4 1712 760 244 74 5 chr3 147823065 147823232 -11776551 + MYSERV-int LTR ERVK 1320 1500 -7459 4 1712 361 70 58 11 chr3 147823422 147823509 -11776274 + (CAAA)n Simple_repeat Simple_repeat 2 92 0 4 1712 4425 238 46 67 chr3 147823659 147824110 -11775673 + MYSERV-int LTR ERVK 1634 2032 -6927 4 1712 1066 109 7 0 chr3 147824110 147824257 -11775526 - B1_Mus1 SINE Alu 0 148 1 4 1712 4425 238 46 67 chr3 147824257 147825455 -11774328 + MYSERV-int LTR ERVK 2033 3249 -5710 4 1712 5736 243 113 58 chr3 147825424 147828502 -11771281 + MYSERV-int LTR ERVK 3513 6521 -29 4 1712 620 299 57 39 chr3 147828521 147828855 -11770928 + RLTR15 LTR ERVK 1 340 -19 4 1712 1126 141 16 16 chr3 147828913 147829100 -11770683 - B2_Mm2 SINE B2 -8 187 1 4 1712 1022 77 7 0 chr3 147831105 147831248 -11768535 + B1_Mus1 SINE Alu 5 148 0 4 1712 553 26 39 0 chr3 147831249 147831327 -11768456 + (CAAAAA)n Simple_repeat Simple_repeat 3 83 0 4 1712 22181 119 125 40 chr3 147831331 147833831 -11765952 + L1Md_F2 LINE L1 217 2464 -3419 4 1712 2436 98 78 10 chr3 147833831 147834214 -11765569 - IAPLTR2a LTR ERVK -2 409 1 4 1712 22181 75 188 6 chr3 147834214 147836667 -11763116 + L1Md_F2 LINE L1 2465 5583 -300 4 1712 7678 62 1 10 chr3 147836669 147837659 -11762124 + L1Md_F2 LINE L1 5588 6568 -14 4 1712 687 335 132 22 chr3 147837888 147838429 -11761354 - Lx8 LINE L1 -398 7075 6466 4 1712 396 0 0 0 chr3 147838429 147838473 -11761310 + (TA)n Simple_repeat Simple_repeat 2 45 0 4 1712 687 335 132 22 chr3 147838473 147838559 -11761224 - Lx8 LINE L1 -1008 6465 6379 4 1712 713 189 13 0 chr3 147838663 147838816 -11760967 + (CATA)n Simple_repeat Simple_repeat 4 158 0 4 1712 888 267 17 20 chr3 147838816 147839110 -11760673 - Lx8 LINE L1 -124 5723 5431 4 1712 427 331 66 7 chr3 147839213 147839365 -11760418 - B3A SINE B2 -28 170 10 4 1712 442 235 0 0 chr3 147839604 147839702 -11760081 - L1_Mur3 LINE L1 -2073 3807 3710 4 1712 7660 64 2 1 chr3 147839699 147840732 -11759051 + L1Md_F2 LINE L1 4552 5585 -298 4 1712 6936 63 81 3 chr3 147840733 147841656 -11758127 + L1Md_F2 LINE L1 5587 6581 -1 4 1712 25 0 0 0 chr3 147841747 147841772 -11758011 + AT_rich Low_complexity Low_complexity 1 25 0 4 1712 1201 106 0 26 chr3 147841777 147841971 -11757812 + L1Md_F2 LINE L1 6382 6570 -12 4 1712 423 0 0 0 chr3 147841977 147842024 -11757759 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 4 1712 239 291 38 19 chr3 147842024 147842129 -11757654 + L1_Mur2 LINE L1 3658 3764 -2116 4 1712 460 365 98 11 chr3 147842866 147843151 -11756632 - L1M4b LINE L1 -482 6556 6247 4 1712 267 223 181 35 chr3 147843201 147843461 -11756322 - L1M4b LINE L1 -748 6258 5961 4 1712 237 193 22 33 chr3 147843468 147843559 -11756224 + CT-rich Low_complexity Low_complexity 4 93 0 4 1712 289 337 0 0 chr3 147843578 147843679 -11756104 + CT-rich Low_complexity Low_complexity 2 102 0 4 1712 419 330 51 51 chr3 147843679 147843896 -11755887 - L1M4b LINE L1 -1015 5991 5775 4 1712 256 317 117 16 chr3 147844146 147844572 -11755211 - L1M4b LINE L1 -3183 3823 3355 4 1712 262 313 20 0 chr3 147844767 147844866 -11754917 - L1M4b LINE L1 -6240 1094 994 4 1712 314 333 178 13 chr3 147845008 147845160 -11754623 - L1M4b LINE L1 -7044 290 114 4 1712 597 292 134 26 chr3 147846088 147846320 -11753463 + MTEa LTR MaLR 1 257 -122 4 1712 372 284 60 0 chr3 147846399 147846515 -11753268 + MTEa LTR MaLR 248 370 -9 4 1712 195 114 0 0 chr3 147846861 147846896 -11752887 + (CCCA)n Simple_repeat Simple_repeat 3 37 0 4 1712 503 359 102 31 chr3 147846908 147847037 -11752746 + L1MB8 LINE L1 5260 5397 -781 4 1712 3035 58 8 8 chr3 147847037 147847433 -11752350 + MTA_Mm LTR MaLR 1 396 0 4 1712 503 359 102 31 chr3 147847433 147847990 -11751793 + L1MB8 LINE L1 5398 5995 -183 4 1712 288 0 0 0 chr3 147849067 147849099 -11750684 + (CA)n Simple_repeat Simple_repeat 2 33 0 4 1712 546 63 0 0 chr3 147849099 147849178 -11750605 + (CAGAGA)n Simple_repeat Simple_repeat 6 84 0 4 1713 521 347 0 34 chr3 147849303 147849452 -11750331 + RSINE1 SINE B4 3 146 -19 4 1713 364 367 50 17 chr3 147850178 147850358 -11749425 - MIRb SINE MIR -46 222 37 4 1713 23 0 0 0 chr3 147852344 147852367 -11747416 + AT_rich Low_complexity Low_complexity 1 23 0 4 1713 198 71 0 0 chr3 147852385 147852413 -11747370 + (TG)n Simple_repeat Simple_repeat 2 29 0 4 1713 264 346 72 38 chr3 147852430 147852694 -11747089 - B4A SINE B4 -18 274 2 4 1713 210 356 30 0 chr3 147853903 147854004 -11745779 + L2a LINE L2 3307 3410 -16 4 1713 226 316 10 21 chr3 147854501 147854598 -11745185 + CT-rich Low_complexity Low_complexity 4 99 0 4 1713 34 42 0 0 chr3 147854605 147854653 -11745130 + AT_rich Low_complexity Low_complexity 1 48 0 4 1713 422 271 34 8 chr3 147855854 147855973 -11743810 + B1F1 SINE Alu 21 142 -7 4 1713 678 13 0 0 chr3 147856198 147856277 -11743506 + (TC)n Simple_repeat Simple_repeat 1 79 0 4 1713 282 87 0 0 chr3 147856277 147856322 -11743461 + (CA)n Simple_repeat Simple_repeat 1 46 0 4 1713 21 36 0 0 chr3 147856588 147856616 -11743167 + AT_rich Low_complexity Low_complexity 1 28 0 4 1713 272 149 0 78 chr3 147856716 147856767 -11743016 + RSINE1 SINE B4 4 50 -115 4 1713 1065 113 0 0 chr3 147856768 147856945 -11742838 + (CA)n Simple_repeat Simple_repeat 1 177 0 4 1713 305 347 81 12 chr3 147857975 147858147 -11741636 + MIR SINE MIR 66 249 -13 4 1713 590 350 96 35 chr3 147858772 147859201 -11740582 - RMER5 LTR ERV1 -17 517 63 4 1713 426 292 114 21 chr3 147860497 147860787 -11738996 - Lx9 LINE L1 -7 7637 7321 4 1713 375 234 137 53 chr3 147860870 147861001 -11738782 - Lx8 LINE L1 -1061 6412 6271 4 1713 746 201 7 28 chr3 147861073 147861216 -11738567 - B1_Mur4 SINE Alu 0 150 11 4 1713 283 268 28 102 chr3 147861122 147861230 -11738553 - MT2B LTR ERVL -344 257 158 4 1713 371 258 39 12 chr3 147861714 147861878 -11737905 - Lx8 LINE L1 -1559 5914 5750 4 1713 1344 236 17 62 chr3 147861884 147862236 -11737547 - RMER1C Other Other -373 969 634 4 1713 276 269 23 8 chr3 147862246 147862377 -11737406 - Lx8 LINE L1 -522 5358 5226 4 1713 633 322 94 4 chr3 147863206 147863462 -11736321 + B4A SINE B4 1 279 -13 4 1713 567 0 0 0 chr3 147863481 147863544 -11736239 + (CA)n Simple_repeat Simple_repeat 2 64 0 4 1713 1009 339 77 51 chr3 147864218 147864679 -11735104 + MLT2B3 LTR ERVL 5 496 -58 4 1713 192 97 0 0 chr3 147864679 147864710 -11735073 + (TCTCTG)n Simple_repeat Simple_repeat 4 34 0 4 1713 1009 339 77 51 chr3 147864710 147864780 -11735003 + MLT2B3 LTR ERVL 497 550 -4 4 1713 1257 338 46 44 chr3 147864898 147865465 -11734318 + MLT1E2 LTR MaLR 7 574 -53 4 1713 216 0 0 0 chr3 147866665 147866689 -11733094 + (TG)n Simple_repeat Simple_repeat 2 25 0 5 1713 224 77 0 25 chr3 147866965 147867005 -11732778 + (TA)n Simple_repeat Simple_repeat 2 40 0 5 1713 207 0 0 0 chr3 147867029 147867052 -11732731 + (TTTG)n Simple_repeat Simple_repeat 1 23 0 5 1713 211 204 102 0 chr3 147867969 147868018 -11731765 + PB1 SINE Alu 73 126 -1 5 1713 226 237 43 3 chr3 147868035 147868102 -11731681 + ID4_ SINE ID 14 83 -69 5 1713 374 291 42 42 chr3 147868190 147868355 -11731428 - ORR1E LTR MaLR -163 196 32 5 1713 472 373 6 0 chr3 147869462 147869620 -11730163 + RSINE1 SINE B4 3 161 -4 5 1713 195 114 0 0 chr3 147869624 147869659 -11730124 + (TGAA)n Simple_repeat Simple_repeat 3 37 0 5 1713 833 155 0 6 chr3 147869910 147869933 -11729850 + polypurine Low_complexity Low_complexity 2 24 0 5 1713 1037 113 0 0 chr3 147869933 147870074 -11729709 + B1_Mm SINE Alu 1 141 -6 5 1713 833 155 0 6 chr3 147870074 147870206 -11729577 + GA-rich Low_complexity Low_complexity 25 155 0 5 1713 3754 21 5 0 chr3 147870282 147870713 -11729070 + L1Md_F2 LINE L1 6136 6568 -14 5 1713 200 303 25 38 chr3 147870954 147871033 -11728750 - L2a LINE L2 -10 3416 3339 5 1713 202 267 44 55 chr3 147871455 147871546 -11728237 - L2a LINE L2 -504 2915 2826 5 1713 461 319 42 34 chr3 147871711 147871948 -11727835 - L2a LINE L2 -702 2717 2479 5 1713 718 100 71 55 chr3 147872408 147872535 -11727248 + L1_Mus1 LINE L1 6439 6567 0 5 1713 656 83 0 10 chr3 147873535 147873632 -11726151 + (TTTTG)n Simple_repeat Simple_repeat 2 97 0 5 1713 378 282 0 0 chr3 147873783 147873861 -11725922 + B3A SINE B2 3 80 -118 5 1713 22 35 0 0 chr3 147877056 147877085 -11722698 + AT_rich Low_complexity Low_complexity 1 29 0 5 1713 761 285 22 6 chr3 147878293 147878510 -11721273 - ORR1D2-int LTR MaLR -1560 232 13 5 1713 505 261 63 29 chr3 147878510 147878703 -11721080 - ORR1D2 LTR MaLR -4 366 125 5 1713 520 322 22 44 chr3 147878834 147879016 -11720767 + B4A SINE B4 2 179 -113 5 1713 477 0 0 0 chr3 147879069 147879122 -11720661 + (CA)n Simple_repeat Simple_repeat 1 53 0 5 1713 207 0 0 0 chr3 147880665 147880688 -11719095 + (CA)n Simple_repeat Simple_repeat 1 23 0 5 1713 225 0 0 0 chr3 147881408 147881433 -11718350 + (TG)n Simple_repeat Simple_repeat 1 25 0 5 1713 236 127 18 0 chr3 147881673 147881728 -11718055 + (TTA)n Simple_repeat Simple_repeat 3 58 0 5 1713 338 316 49 92 chr3 147881741 147881905 -11717878 - RSINE1 SINE B4 -1 164 8 5 1713 413 296 9 93 chr3 147882272 147882334 -11717449 - B3A SINE B2 0 216 160 5 1713 836 75 4 47 chr3 147882334 147882516 -11717267 + (TG)n Simple_repeat Simple_repeat 1 179 -55 5 1713 836 75 4 47 chr3 147882525 147882579 -11717204 + (TG)n Simple_repeat Simple_repeat 180 234 0 5 1713 413 283 8 89 chr3 147882579 147882693 -11717090 - B3A SINE B2 -41 157 46 5 1713 226 240 125 62 chr3 147883728 147883808 -11715975 + PB1D7 SINE Alu 22 106 -14 5 1713 450 0 0 0 chr3 147883809 147883859 -11715924 + (CA)n Simple_repeat Simple_repeat 2 51 0 5 1713 351 0 0 0 chr3 147883867 147883906 -11715877 + (GA)n Simple_repeat Simple_repeat 2 40 0 5 1713 480 272 71 47 chr3 147883996 147884166 -11715617 - B3 SINE B2 -1 215 42 5 1713 361 82 0 0 chr3 147884230 147884279 -11715504 - HAL1-3A_ME LINE L1 -834 2024 1976 5 1713 197 158 35 0 chr3 147884312 147884369 -11715414 + (TCTG)n Simple_repeat Simple_repeat 4 62 0 5 1713 378 0 0 0 chr3 147885047 147885089 -11714694 + (TG)n Simple_repeat Simple_repeat 2 43 0 5 1713 32 0 0 0 chr3 147885502 147885534 -11714249 + AT_rich Low_complexity Low_complexity 1 32 0 5 1713 607 353 55 26 chr3 147885582 147885855 -11713928 + B4A SINE B4 10 290 -2 5 1713 858 134 25 8 chr3 147886139 147886632 -11713151 + (TG)n Simple_repeat Simple_repeat 1 501 0 5 1713 267 362 18 41 chr3 147886764 147886934 -11712849 - L2 LINE L2 -838 2581 2416 5 1713 264 230 95 0 chr3 147887424 147887498 -11712285 + ID SINE ID 9 89 -135 5 1713 208 229 0 0 chr3 147888187 147888235 -11711548 + A-rich Low_complexity Low_complexity 6 53 0 5 1713 336 342 38 17 chr3 147888644 147888882 -11710901 + Lx8 LINE L1 7225 7467 -6 5 1713 296 330 8 17 chr3 147888930 147889050 -11710733 + GA-rich Low_complexity Low_complexity 3 121 0 5 1713 473 47 0 15 chr3 147889346 147889411 -11710372 + (TTTTG)n Simple_repeat Simple_repeat 2 65 0 5 1713 896 296 24 92 chr3 147889429 147889808 -11709975 + ORR1E LTR MaLR 3 355 -4 5 1713 189 196 17 67 chr3 147890680 147890740 -11709043 + L4 LINE RTE 619 675 -1354 5 1713 185 65 0 31 chr3 147891734 147891766 -11708017 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 5 1713 284 158 0 17 chr3 147892075 147892112 -11707671 + (TA)n Simple_repeat Simple_repeat 1 37 0 5 1713 339 25 0 0 chr3 147892112 147892152 -11707631 + (CA)n Simple_repeat Simple_repeat 1 40 0 5 1713 284 158 0 17 chr3 147892152 147892172 -11707611 + (TA)n Simple_repeat Simple_repeat 1 20 0 5 1713 270 73 0 0 chr3 147892800 147892841 -11706942 + (TG)n Simple_repeat Simple_repeat 2 42 0 5 1713 1167 24 29 12 chr3 147892914 147893086 -11706697 + (TAGA)n Simple_repeat Simple_repeat 4 178 0 5 1713 209 30 61 0 chr3 147893141 147893174 -11706609 + (CAGA)n Simple_repeat Simple_repeat 2 36 0 5 1713 611 224 55 8 chr3 147893364 147893513 -11706270 - MTD LTR MaLR 0 419 222 5 1713 474 18 0 0 chr3 147893728 147893783 -11706000 + (TA)n Simple_repeat Simple_repeat 2 56 0 5 1713 234 265 121 5 chr3 147894019 147894141 -11705642 + MIR SINE MIR 6 147 -129 5 1713 1029 226 74 126 chr3 147894400 147894437 -11705346 + ORR1C2 LTR MaLR 1 33 -351 5 1713 2676 55 0 55 chr3 147894437 147894803 -11704980 - ORR1A1 LTR MaLR 0 346 1 5 1713 1029 226 74 126 chr3 147894803 147895170 -11704613 + ORR1C2 LTR MaLR 34 384 0 5 1713 449 333 166 5 chr3 147895189 147895382 -11704401 - ID_B1 SINE B4 0 224 1 5 1713 189 0 0 0 chr3 147895615 147895636 -11704147 + (TA)n Simple_repeat Simple_repeat 2 22 0 5 1713 405 0 0 0 chr3 147895636 147895680 -11704103 + (TG)n Simple_repeat Simple_repeat 2 46 0 5 1713 229 256 105 120 chr3 147897923 147898056 -11701727 + MTE2a LTR MaLR 22 152 -227 5 1713 30 27 0 0 chr3 147898625 147898662 -11701121 + AT_rich Low_complexity Low_complexity 1 37 0 5 1713 306 171 69 8 chr3 147898662 147898792 -11700991 + (TA)n Simple_repeat Simple_repeat 1 138 0 5 1713 291 281 115 10 chr3 147898837 147898941 -11700842 - MLT1F1 LTR MaLR -12 557 443 5 1713 676 83 9 18 chr3 147899561 147899671 -11700112 + (GAGAA)n Simple_repeat Simple_repeat 2 110 0 5 1713 896 91 0 8 chr3 147899971 147900104 -11699679 + (GGAA)n Simple_repeat Simple_repeat 3 134 0 5 1713 294 302 50 109 chr3 147901378 147901497 -11698286 - B1F SINE Alu -21 128 17 5 1713 289 315 88 78 chr3 147901615 147901808 -11697975 + MIRb SINE MIR 11 209 -59 5 1713 5485 131 15 10 chr3 147901832 147902711 -11697072 + Lx3B LINE L1 6086 6968 -5 5 1713 33310 74 4 15 chr3 147902734 147906896 -11692887 + L1Md_F3 LINE L1 507 4603 -1280 5 1713 7193 36 1 0 chr3 147906896 147907753 -11692030 + L1Md_T LINE L1 5725 6582 0 5 1713 33310 60 4 0 chr3 147907753 147908734 -11691049 + L1Md_F3 LINE L1 4604 5584 -299 5 1713 8114 48 5 0 chr3 147908735 147909728 -11690055 + L1Md_F3 LINE L1 5587 6584 0 5 1713 1102 299 42 21 chr3 147909892 147910227 -11689556 + ORR1E LTR MaLR 5 346 -13 5 1713 22 35 0 0 chr3 147910738 147910767 -11689016 + AT_rich Low_complexity Low_complexity 1 29 0 5 1713 696 169 0 0 chr3 147910929 147911107 -11688676 + CT-rich Low_complexity Low_complexity 1 178 0 5 1713 1055 308 70 48 chr3 147911466 147912007 -11687776 + MLT1F1 LTR MaLR 3 565 -4 5 1713 428 237 109 8 chr3 147912240 147912359 -11687424 + ID_B1 SINE B4 93 223 -1 5 1713 556 267 89 0 chr3 147912383 147912529 -11687254 + B3 SINE B2 1 159 -57 5 1713 195 250 0 0 chr3 147912941 147912993 -11686790 + (CATATA)n Simple_repeat Simple_repeat 3 54 0 5 1713 222 267 33 0 chr3 147913400 147913460 -11686323 + B3A SINE B2 7 68 -130 5 1713 2422 53 9 6 chr3 147913474 147913799 -11685984 + IAPEY2_LTR LTR ERVK 32 357 0 5 1713 350 345 7 27 chr3 147913799 147913911 -11685872 + B3A SINE B2 72 180 -18 5 1713 225 301 130 78 chr3 147914412 147914643 -11685140 - ORR1B2 LTR MaLR -4 363 121 5 1713 198 0 0 0 chr3 147915078 147915100 -11684683 + (T)n Simple_repeat Simple_repeat 1 22 0 5 1713 1686 303 39 10 chr3 147917849 147918535 -11681248 + L1MC4 LINE L1 7104 7809 -233 5 1713 471 63 0 0 chr3 147919373 147919436 -11680347 + (CA)n Simple_repeat Simple_repeat 2 64 0 5 1713 1087 269 52 70 chr3 147919576 147920019 -11679764 + Lx8 LINE L1 7038 7472 -1 5 1713 2298 35 11 3 chr3 147920025 147920312 -11679471 - L1Md_F3 LINE L1 -16 6568 6280 5 1713 410 322 82 0 chr3 147920825 147921008 -11678775 - B3A SINE B2 0 198 1 5 1713 363 330 75 9 chr3 147921346 147921560 -11678223 + MLT2B1 LTR ERVL 260 487 -33 5 1713 347 272 18 0 chr3 147922106 147922220 -11677563 - L1MC2 LINE L1 -463 5881 5766 5 1713 250 366 92 21 chr3 147922236 147922518 -11677265 - MLT2B3 LTR ERVL -7 547 246 5 1713 247 188 0 20 chr3 147923274 147923323 -11676460 + (TG)n Simple_repeat Simple_repeat 1 48 0 5 1713 396 292 116 61 chr3 147923332 147923609 -11676174 - B4A SINE B4 0 292 1 5 1713 24 0 0 0 chr3 147924038 147924062 -11675721 + AT_rich Low_complexity Low_complexity 1 24 0 5 1713 3540 166 48 37 chr3 147924435 147925136 -11674647 + RMER6D LTR ERVK 1 709 -11 5 1713 615 222 0 16 chr3 147925160 147925288 -11674495 - Lx6 LINE L1 -744 6716 6591 5 1713 3016 157 38 0 chr3 147925331 147925473 -11674310 - L1_Mur3 LINE L1 -1454 4426 4282 5 1713 303 28 0 0 chr3 147925473 147925509 -11674274 + (TG)n Simple_repeat Simple_repeat 1 36 0 5 1713 3016 157 38 0 chr3 147925509 147925940 -11673843 - L1_Mur3 LINE L1 -1599 4281 3832 5 1713 3099 239 102 16 chr3 147925954 147926516 -11673267 + Lx7 LINE L1 6769 7371 -325 5 1713 522 79 0 0 chr3 147926516 147926592 -11673191 + (TA)n Simple_repeat Simple_repeat 2 77 0 5 1713 3099 239 102 16 chr3 147926592 147926883 -11672900 + Lx7 LINE L1 7372 7694 -2 5 1713 288 0 0 0 chr3 147928484 147928516 -11671267 + (TAGA)n Simple_repeat Simple_repeat 1 32 0 5 1713 1579 43 86 0 chr3 147928819 147929028 -11670755 - L1Md_F3 LINE L1 -1 6583 6357 5 1713 603 323 58 9 chr3 147929369 147929594 -11670189 - MER2 DNA MER2_type -81 264 29 6 1713 1838 254 91 128 chr3 147929824 147930954 -11668829 - RMER1B Other Other -9 1057 2 6 1713 21 57 0 0 chr3 147931143 147931178 -11668605 + AT_rich Low_complexity Low_complexity 1 35 0 6 1713 312 289 103 1 chr3 147931663 147931886 -11667897 - L1M5 LINE L1 -679 5499 5255 6 1713 246 261 54 25 chr3 147931884 147932033 -11667750 - L1MC LINE L1 -809 5337 5188 6 1713 247 254 32 0 chr3 147932048 147932111 -11667672 + CT-rich Low_complexity Low_complexity 4 68 0 6 1713 236 320 38 25 chr3 147932119 147932199 -11667584 - PB1D7 SINE Alu -26 94 14 6 1713 277 220 104 18 chr3 147932301 147932425 -11667358 - L1MC LINE L1 -1291 4855 4716 6 1713 459 0 0 0 chr3 147933255 147933306 -11666477 + (CA)n Simple_repeat Simple_repeat 2 52 0 6 1713 197 335 11 137 chr3 147935185 147935375 -11664408 - L2c LINE L2 0 3387 3222 6 1713 251 146 18 0 chr3 147935486 147935541 -11664242 + (TTTA)n Simple_repeat Simple_repeat 2 57 0 6 1713 834 148 35 0 chr3 147935550 147935692 -11664091 - B1_Mus1 SINE Alu -1 147 1 6 1713 5719 69 7 4 chr3 147935846 147936602 -11663181 - Lx3_Mus LINE L1 -1 7008 6251 6 1713 530 222 20 39 chr3 147936837 147936990 -11662793 + B3 SINE B2 2 216 0 6 1713 348 368 41 22 chr3 147937066 147937336 -11662447 + B4A SINE B4 2 276 -16 6 1713 315 71 0 0 chr3 147937344 147937386 -11662397 + (TG)n Simple_repeat Simple_repeat 1 42 0 6 1713 180 135 0 0 chr3 147937398 147937435 -11662348 + (CA)n Simple_repeat Simple_repeat 1 37 0 6 1713 2660 72 79 5 chr3 147937470 147937862 -11661921 + BGLII LTR ERVK 1 421 0 6 1713 568 250 128 16 chr3 147938049 147938236 -11661547 - B3 SINE B2 -6 210 3 6 1713 675 296 7 0 chr3 147938276 147938428 -11661355 + RSINE1 SINE B4 11 163 -2 6 1713 296 273 69 15 chr3 147940267 147940397 -11659386 - Lx8 LINE L1 -355 7118 6982 6 1713 405 0 0 0 chr3 147940461 147940506 -11659277 + (CA)n Simple_repeat Simple_repeat 1 45 0 6 1713 235 208 51 13 chr3 147940960 147941038 -11658745 + (TA)n Simple_repeat Simple_repeat 1 81 0 6 1713 322 333 80 6 chr3 147941044 147941207 -11658576 + Lx8 LINE L1 6954 7128 -345 6 1713 1202 92 0 5 chr3 147942347 147942560 -11657223 + (TTTC)n Simple_repeat Simple_repeat 1 211 0 6 1713 539 85 12 0 chr3 147942620 147942702 -11657081 + (TTA)n Simple_repeat Simple_repeat 2 84 0 6 1713 185 65 32 0 chr3 147942767 147942798 -11656985 + (TAAA)n Simple_repeat Simple_repeat 4 35 0 6 1713 325 116 29 0 chr3 147944275 147944344 -11655439 + (CAAA)n Simple_repeat Simple_repeat 2 72 0 6 1713 231 265 0 0 chr3 147944441 147944490 -11655293 + ZP3AR Satellite Satellite 47 95 -117 6 1713 21 0 0 0 chr3 147944575 147944596 -11655187 + AT_rich Low_complexity Low_complexity 1 21 0 6 1713 2553 107 3 8 chr3 147944606 147944991 -11654792 + L1_Mus4 LINE L1 6254 6636 0 6 1713 350 69 17 0 chr3 147945441 147945499 -11654284 + (CA)n Simple_repeat Simple_repeat 2 60 0 6 1713 25 31 0 0 chr3 147945531 147945563 -11654220 + AT_rich Low_complexity Low_complexity 1 32 0 6 1713 339 338 103 30 chr3 147945669 147945901 -11653882 + MIR SINE MIR 14 262 0 6 1713 22 0 0 0 chr3 147946224 147946246 -11653537 + AT_rich Low_complexity Low_complexity 1 22 0 6 1713 230 262 0 0 chr3 147946849 147946910 -11652873 + Lx8 LINE L1 6368 6428 -1045 6 1713 897 276 161 3 chr3 147946948 147947297 -11652486 + Lx8 LINE L1 6561 6964 -509 6 1713 339 324 126 6 chr3 147948332 147948515 -11651268 - L2 LINE L2 -910 2509 2305 6 1713 2050 160 44 5 chr3 147948521 147948905 -11650878 + Lx2 LINE L1 6599 6997 0 6 1713 899 106 45 0 chr3 147949641 147949773 -11650010 + B2_Mm2 SINE B2 3 140 -55 6 1713 475 304 16 62 chr3 147950499 147950692 -11649091 - ORR1E LTR MaLR -13 346 163 6 1713 265 200 0 34 chr3 147950712 147950800 -11648983 + GA-rich Low_complexity Low_complexity 6 90 0 6 1713 691 264 59 43 chr3 147950800 147950986 -11648797 - ORR1E LTR MaLR -170 189 1 6 1713 192 372 0 16 chr3 147951131 147951254 -11648529 + MIR SINE MIR 100 220 -42 6 1713 25 0 0 0 chr3 147951991 147952016 -11647767 + AT_rich Low_complexity Low_complexity 1 25 0 6 1713 7162 99 2 17 chr3 147954641 147956449 -11643334 + L1_Mus3 LINE L1 4854 6633 -5 6 1713 345 100 0 0 chr3 147956707 147956757 -11643026 + (TA)n Simple_repeat Simple_repeat 2 51 0 6 1713 735 22 0 0 chr3 147956757 147956845 -11642938 + (TG)n Simple_repeat Simple_repeat 2 90 0 6 1713 5647 40 0 3 chr3 147957637 147958317 -11641466 - L1Md_F2 LINE L1 -12 6570 5893 6 1713 292 324 9 28 chr3 147958917 147959025 -11640758 + RSINE1 SINE B4 2 107 -58 6 1713 373 339 26 48 chr3 147960158 147960347 -11639436 + MIRc SINE MIR 17 201 -67 6 1713 470 301 40 61 chr3 147960730 147960928 -11638855 - B3A SINE B2 -1 197 4 6 1713 370 211 0 19 chr3 147960980 147961086 -11638697 + GA-rich Low_complexity Low_complexity 5 108 0 6 1713 334 262 170 30 chr3 147961280 147961445 -11638338 + B3A SINE B2 4 191 -7 6 1713 242 304 98 0 chr3 147961542 147961634 -11638149 - ORR1E LTR MaLR -13 346 246 6 1713 251 204 40 20 chr3 147961709 147961809 -11637974 + (TTATA)n Simple_repeat Simple_repeat 4 105 0 6 1713 424 123 12 24 chr3 147961809 147961892 -11637891 + (CATATA)n Simple_repeat Simple_repeat 3 84 0 6 1713 242 369 137 16 chr3 147963459 147963649 -11636134 + B4 SINE B4 1 213 -79 6 1713 264 176 0 56 chr3 147963711 147963801 -11635982 + GA-rich Low_complexity Low_complexity 5 89 0 6 1713 459 35 0 0 chr3 147963896 147963953 -11635830 + (CA)n Simple_repeat Simple_repeat 2 58 0 6 1713 345 271 189 18 chr3 147965506 147965675 -11634108 - MTEa LTR MaLR -12 367 170 6 1713 609 228 82 7 chr3 147967076 147967217 -11632566 + B3A SINE B2 1 152 -46 6 1713 501 71 0 0 chr3 147967217 147967287 -11632496 + (CA)n Simple_repeat Simple_repeat 1 70 0 6 1713 290 312 23 25 chr3 147968149 147968287 -11631496 - MLT1A1 LTR MaLR -2 406 237 6 1713 198 143 0 0 chr3 147969334 147969369 -11630414 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 6 1713 257 286 78 68 chr3 147971171 147971362 -11628421 - L1MA10 LINE L1 -1 6333 6141 6 1713 626 98 10 10 chr3 147971348 147971451 -11628332 + Lx2 LINE L1 6543 6645 -352 6 1713 1123 136 10 20 chr3 147971449 147971651 -11628132 + Lx2 LINE L1 6775 6974 -23 6 1713 570 295 64 0 chr3 147971712 147971868 -11627915 - ID_B1 SINE B4 -54 170 5 6 1713 220 293 29 29 chr3 147972362 147972464 -11627319 + MIRc SINE MIR 117 218 -50 6 1713 23 68 0 0 chr3 147974567 147974611 -11625172 + AT_rich Low_complexity Low_complexity 1 44 0 6 1713 275 67 0 43 chr3 147975033 147975080 -11624703 + (TCTCTG)n Simple_repeat Simple_repeat 2 46 0 6 1713 552 100 0 0 chr3 147975080 147975160 -11624623 + (CA)n Simple_repeat Simple_repeat 1 80 0 6 1713 221 125 0 48 chr3 147976515 147976557 -11623226 + T-rich Low_complexity Low_complexity 2 41 0 6 1713 971 295 27 89 chr3 147977432 147977804 -11621979 + MTEb LTR MaLR 31 379 0 6 1713 387 0 0 0 chr3 147978177 147978220 -11621563 + (TTTA)n Simple_repeat Simple_repeat 4 46 0 6 1713 826 309 24 24 chr3 147979643 147979898 -11619885 + B4 SINE B4 36 290 -2 6 1714 2448 114 43 5 chr3 147980317 147980713 -11619070 + Lx3C LINE L1 6558 6968 -8 6 1714 219 150 0 0 chr3 147980723 147980763 -11619020 + (TAA)n Simple_repeat Simple_repeat 2 41 0 6 1714 284 331 82 14 chr3 147980763 147980910 -11618873 + B4A SINE B4 43 199 -93 6 1714 13743 20 35 35 chr3 147980922 147982035 -11617748 + L1_Mm LINE L1 3755 4907 -976 6 1714 228 183 46 77 chr3 147982035 147982100 -11617683 - RMER20A LTR ERVK -268 248 186 6 1714 13743 20 35 35 chr3 147982100 147982754 -11617029 + L1_Mm LINE L1 4908 5586 -297 6 1714 9009 6 0 0 chr3 147982754 147983750 -11616033 + L1Md_T LINE L1 5587 6582 0 6 1714 209 337 87 29 chr3 147985361 147985465 -11614318 - L2a LINE L2 -252 3174 3065 6 1714 274 198 32 42 chr3 147985590 147985658 -11614125 + (TTTG)n Simple_repeat Simple_repeat 4 71 0 6 1714 1806 95 8 22 chr3 147985658 147985926 -11613857 - Lx3_Mus LINE L1 -8 7001 6738 6 1714 274 198 32 42 chr3 147985926 147985952 -11613831 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 6 1714 294 309 123 0 chr3 147985970 147986132 -11613651 + L2 LINE L2 2638 2819 -600 6 1714 190 389 71 0 chr3 147986732 147986858 -11612925 - L2a LINE L2 -798 2621 2487 6 1714 409 293 75 33 chr3 147986920 147987132 -11612651 - ID_B1 SINE B4 -2 222 2 6 1714 25 0 0 0 chr3 147987148 147987173 -11612610 + AT_rich Low_complexity Low_complexity 1 25 0 6 1714 22 35 0 0 chr3 147987637 147987666 -11612117 + AT_rich Low_complexity Low_complexity 1 29 0 6 1714 440 35 0 17 chr3 147987897 147987956 -11611827 + (TTATA)n Simple_repeat Simple_repeat 1 58 0 6 1714 928 252 120 34 chr3 147988219 147988544 -11611239 + ORR1D1 LTR MaLR 6 358 -16 6 1714 203 316 187 41 chr3 147988684 147988951 -11610832 - L3 LINE CR1 -598 3891 3586 6 1714 2100 184 47 10 chr3 147989125 147989531 -11610252 + MTC LTR MaLR 1 421 0 6 1714 243 211 68 27 chr3 147991557 147991630 -11608153 - Lx7 LINE L1 0 7696 7621 6 1714 876 235 138 21 chr3 147991644 147991837 -11607946 - Lx7 LINE L1 -52 7644 7424 6 1714 555 85 0 0 chr3 147991837 147991919 -11607864 + (CA)n Simple_repeat Simple_repeat 1 82 0 6 1714 876 235 138 21 chr3 147991919 147992059 -11607724 - Lx7 LINE L1 -273 7423 7273 6 1714 3683 227 56 18 chr3 147992054 147992912 -11606871 - Lx7 LINE L1 -537 7159 6269 6 1714 183 374 30 10 chr3 147993995 147994095 -11605688 + MIRc SINE MIR 78 179 -89 6 1714 23 0 0 0 chr3 147995997 147996020 -11603763 + AT_rich Low_complexity Low_complexity 1 23 0 6 1714 228 374 16 24 chr3 147996250 147996376 -11603407 + MIRc SINE MIR 126 250 -18 6 1714 1050 304 56 10 chr3 147996576 147996878 -11602905 + MTEa LTR MaLR 28 343 -36 6 1714 234 0 0 0 chr3 147997675 147997701 -11602082 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 6 1714 552 30 0 0 chr3 147999015 147999081 -11600702 + (GA)n Simple_repeat Simple_repeat 1 66 0 6 1714 264 365 80 51 chr3 148000638 148000912 -11598871 + LTR33A_ LTR ERVL 248 529 -2 1 1714 216 158 0 0 chr3 148001316 148001354 -11598429 + CT-rich Low_complexity Low_complexity 3 40 0 2 1714 438 20 0 0 chr3 148001666 148001717 -11598066 + (TC)n Simple_repeat Simple_repeat 1 51 0 3 1714 207 364 47 9 chr3 148002212 148002423 -11597360 + L2 LINE L2 2197 2415 -1004 4 1714 1059 327 0 7 chr3 148002533 148002813 -11596970 + MTE2b LTR MaLR 3 280 -99 5 1714 372 349 88 66 chr3 148003516 148003743 -11596040 + B4A SINE B4 20 251 -41 6 1714 540 0 0 0 chr3 148003820 148003880 -11595903 + (TAGA)n Simple_repeat Simple_repeat 2 61 0 7 1714 575 27 14 0 chr3 148004620 148004693 -11595090 + (TTTC)n Simple_repeat Simple_repeat 3 76 0 8 1714 484 201 67 56 chr3 148004705 148004884 -11594899 - RMER17C LTR ERVK -135 275 95 9 1714 250 258 0 0 chr3 148005193 148005259 -11594524 + (TA)n Simple_repeat Simple_repeat 2 67 0 1 1714 252 0 0 0 chr3 148007221 148007249 -11592534 + (CA)n Simple_repeat Simple_repeat 1 28 0 1 1714 23 0 0 0 chr3 148008135 148008158 -11591625 + AT_rich Low_complexity Low_complexity 1 23 0 1 1714 894 92 35 7 chr3 148008694 148008837 -11590946 - Lx LINE L1 -10 6644 6498 1 1714 248 61 0 0 chr3 148008837 148008870 -11590913 + MusHAL1 LINE L1 395 427 -2927 1 1714 212 100 25 0 chr3 148009899 148009939 -11589844 + (TTTA)n Simple_repeat Simple_repeat 4 44 0 1 1714 1137 117 0 0 chr3 148010180 148010386 -11589397 + (TG)n Simple_repeat Simple_repeat 1 206 0 1 1714 623 222 20 120 chr3 148010873 148011048 -11588735 + ORR1C1 LTR MaLR 1 160 -218 1 1714 717 31 70 0 chr3 148011048 148011177 -11588606 + (TC)n Simple_repeat Simple_repeat 2 139 0 1 1714 623 222 20 120 chr3 148011177 148011201 -11588582 + ORR1C1 LTR MaLR 161 180 -198 1 1714 361 60 60 0 chr3 148011214 148011281 -11588502 + (TCTCTG)n Simple_repeat Simple_repeat 2 72 0 1 1714 494 206 175 48 chr3 148011284 148011473 -11588310 + ORR1C1 LTR MaLR 172 384 0 1 1714 228 381 101 18 chr3 148011536 148011814 -11587969 + L2 LINE L2 2030 2330 -1089 2 1714 368 339 139 30 chr3 148012095 148012312 -11587471 - LTR33C LTR ERVL -386 242 1 2 1714 255 289 39 26 chr3 148013087 148013154 -11586629 + B4 SINE B4 9 76 -216 2 1714 855 108 0 0 chr3 148013154 148013283 -11586500 + (GGGA)n Simple_repeat Simple_repeat 4 132 0 2 1714 689 42 21 0 chr3 148013293 148013389 -11586394 + (GAAA)n Simple_repeat Simple_repeat 4 101 0 2 1714 294 400 16 8 chr3 148013390 148013511 -11586272 + B4A SINE B4 85 206 -86 2 1714 1016 114 6 0 chr3 148013605 148013781 -11586002 + (CA)n Simple_repeat Simple_repeat 2 178 0 2 1714 321 26 0 0 chr3 148013799 148013837 -11585946 + (GA)n Simple_repeat Simple_repeat 1 38 0 2 1714 558 0 0 0 chr3 148014490 148014552 -11585231 + (TA)n Simple_repeat Simple_repeat 2 63 0 2 1714 1539 256 212 18 chr3 148015681 148016726 -11583057 - RMER1B Other Other -12 1054 1 2 1714 548 337 0 24 chr3 148017306 148017476 -11582307 + B3A SINE B2 3 168 -30 3 1714 1107 112 0 0 chr3 148017477 148017706 -11582077 + (CA)n Simple_repeat Simple_repeat 1 229 0 3 1714 23 0 0 0 chr3 148018102 148018125 -11581658 + AT_rich Low_complexity Low_complexity 1 23 0 3 1714 450 0 0 0 chr3 148018576 148018626 -11581157 + (TA)n Simple_repeat Simple_repeat 2 51 0 3 1714 495 0 0 0 chr3 148018626 148018680 -11581103 + (TG)n Simple_repeat Simple_repeat 2 56 0 3 1714 636 274 71 65 chr3 148020051 148020403 -11579380 + L1MC3 LINE L1 6650 7003 -782 3 1714 508 331 180 34 chr3 148020444 148021060 -11578723 + L1MC3 LINE L1 7073 7778 -7 3 1714 680 253 14 14 chr3 148021065 148021213 -11578570 - B1_Mur1 SINE Alu -1 148 1 3 1714 204 365 69 57 chr3 148021236 148021553 -11578230 + L2 LINE L2 2756 3076 -343 3 1714 276 308 0 0 chr3 148022114 148022192 -11577591 + GA-rich Low_complexity Low_complexity 1 78 0 3 1714 423 0 0 0 chr3 148022700 148022747 -11577036 + (TA)n Simple_repeat Simple_repeat 2 48 0 3 1714 226 370 19 0 chr3 148022792 148022900 -11576883 - MIR SINE MIR -132 130 21 4 1714 636 361 96 7 chr3 148022999 148023281 -11576502 + MLT1A0 LTR MaLR 51 357 -8 4 1714 348 24 0 0 chr3 148024768 148024809 -11574974 + (CA)n Simple_repeat Simple_repeat 2 42 0 4 1714 441 0 0 0 chr3 148024820 148024869 -11574914 + (CAGA)n Simple_repeat Simple_repeat 4 52 0 4 1714 210 319 121 0 chr3 148024986 148025077 -11574706 + MIRc SINE MIR 101 202 -66 4 1714 2593 276 70 21 chr3 148029370 148030243 -11569540 - RCHARR1 DNA MER1_type -15 959 44 4 1714 346 181 19 0 chr3 148031883 148031988 -11567795 + GA-rich Low_complexity Low_complexity 2 108 0 4 1714 809 261 59 5 chr3 148033452 148033656 -11566127 - B3 SINE B2 0 216 2 4 1714 997 289 83 43 chr3 148033749 148034099 -11565684 - MTE2b LTR MaLR 0 379 16 4 1714 330 256 57 139 chr3 148034498 148034810 -11564973 - ERVL-int LTR ERVL -10 5704 5427 4 1714 3307 46 4 125 chr3 148034810 148035306 -11564477 + RLTR10C LTR ERVK 1 436 0 5 1714 330 256 57 139 chr3 148035306 148035361 -11564422 - ERVL-int LTR ERVL -288 5426 5367 4 1714 336 48 0 0 chr3 148035376 148035418 -11564365 + (TATG)n Simple_repeat Simple_repeat 2 43 0 5 1714 1051 294 37 37 chr3 148035437 148035744 -11564039 - ERVL-int LTR ERVL -323 5434 5127 4 1714 2972 169 5 145 chr3 148035744 148036546 -11563237 + RMER6C LTR ERVK 1 690 0 5 1714 1578 315 122 47 chr3 148036546 148037585 -11562198 - ERVL-int LTR ERVL -631 5126 4001 4 1714 900 114 6 12 chr3 148037585 148037745 -11562038 + (TC)n Simple_repeat Simple_repeat 2 160 0 5 1714 1578 318 65 48 chr3 148037745 148038010 -11561773 - ERVL-int LTR ERVL -1757 4000 3740 4 1714 240 336 35 0 chr3 148038165 148038281 -11561502 + MLT-int LTR MaLR 248 367 -1368 5 1714 336 48 0 0 chr3 148038598 148038640 -11561143 + (TA)n Simple_repeat Simple_repeat 2 43 0 5 1714 202 328 0 0 chr3 148038640 148038698 -11561085 + CT-rich Low_complexity Low_complexity 4 61 0 5 1714 451 326 45 45 chr3 148038713 148038915 -11560868 + MLT1B LTR MaLR 189 390 0 5 1714 197 332 112 44 chr3 148039210 148039415 -11560368 + L2 LINE L2 1998 2216 -1203 5 1714 4995 123 24 11 chr3 148039859 148040667 -11559116 + Lx3_Mus LINE L1 6192 7009 0 5 1714 1035 122 181 0 chr3 148041291 148041479 -11558304 + URR1A DNA MER1_type 1 222 -4 6 1714 620 365 120 54 chr3 148041481 148042022 -11557761 + MTE-int LTR MaLR 72 648 -932 6 1714 1770 202 51 18 chr3 148042425 148042818 -11556965 - MTB_Mm LTR MaLR 0 407 2 6 1714 804 225 42 54 chr3 148042818 148043041 -11556742 - MTC-int LTR MaLR -1005 253 32 6 1714 2121 154 42 5 chr3 148043041 148043419 -11556364 - ORR1B1 LTR MaLR 0 394 3 6 1714 804 225 42 54 chr3 148043419 148043435 -11556348 - MTC-int LTR MaLR -1227 31 17 6 1714 222 37 0 0 chr3 148043569 148043596 -11556187 + (CA)n Simple_repeat Simple_repeat 1 27 0 6 1714 270 0 0 0 chr3 148044875 148044905 -11554878 + (CAAA)n Simple_repeat Simple_repeat 3 32 0 6 1714 26 30 0 0 chr3 148044996 148045029 -11554754 + AT_rich Low_complexity Low_complexity 1 33 0 6 1714 4498 96 1 24 chr3 148045149 148045860 -11553923 + L1Md_F2 LINE L1 5938 6582 0 6 1714 600 309 36 72 chr3 148045872 148046095 -11553688 + B4 SINE B4 2 216 -76 6 1714 180 0 0 0 chr3 148046292 148046312 -11553471 + (CAA)n Simple_repeat Simple_repeat 2 21 0 7 1714 868 277 42 5 chr3 148046318 148046532 -11553251 + MTEb LTR MaLR 2 223 -156 7 1714 262 284 60 68 chr3 148047658 148047775 -11552008 + MLT1A1 LTR MaLR 291 406 -2 7 1714 204 122 0 0 chr3 148048624 148048665 -11551118 + (A)n Simple_repeat Simple_repeat 1 41 0 7 1714 944 233 15 0 chr3 148048763 148048969 -11550814 + B3 SINE B2 2 210 -6 7 1714 264 149 0 0 chr3 148051245 148051292 -11548491 + (CA)n Simple_repeat Simple_repeat 2 48 0 7 1714 475 244 94 0 chr3 148052493 148052620 -11547163 + B1F1 SINE Alu 1 139 -10 7 1714 270 73 0 0 chr3 148052937 148052978 -11546805 + (T)n Simple_repeat Simple_repeat 1 41 0 7 1714 452 93 31 10 chr3 148054203 148054301 -11545482 + (TG)n Simple_repeat Simple_repeat 1 100 0 7 1714 484 327 64 81 chr3 148054369 148054605 -11545178 - B4A SINE B4 -22 270 39 7 1714 267 351 18 79 chr3 148055598 148055762 -11544021 + MLT1E3 LTR MaLR 72 225 -399 8 1714 239 305 56 38 chr3 148055780 148055940 -11543843 + MLT2B2 LTR ERVL 381 543 -19 8 1714 213 108 0 0 chr3 148055952 148055989 -11543794 + (TCTCTG)n Simple_repeat Simple_repeat 5 41 0 8 1714 228 211 88 0 chr3 148055989 148056046 -11543737 + MLT2B2 LTR ERVL 494 555 -1 8 1714 222 200 0 0 chr3 148056234 148056262 -11543521 + A-rich Low_complexity Low_complexity 1 28 0 8 1714 243 0 0 0 chr3 148056262 148056289 -11543494 + (TGAA)n Simple_repeat Simple_repeat 2 28 0 8 1714 222 200 0 0 chr3 148056289 148056315 -11543468 + A-rich Low_complexity Low_complexity 29 54 0 8 1714 836 312 87 26 chr3 148057051 148057397 -11542386 + MTD LTR MaLR 38 404 -15 8 1714 25 0 0 0 chr3 148057666 148057691 -11542092 + AT_rich Low_complexity Low_complexity 1 25 0 8 1714 223 282 28 14 chr3 148059392 148059464 -11540319 + ID4_ SINE ID 1 73 -10 8 1714 378 0 0 0 chr3 148059537 148059579 -11540204 + (TG)n Simple_repeat Simple_repeat 1 42 0 8 1714 21 89 0 0 chr3 148059927 148059983 -11539800 + AT_rich Low_complexity Low_complexity 1 56 0 9 1714 22 0 0 0 chr3 148060267 148060289 -11539494 + AT_rich Low_complexity Low_complexity 1 22 0 9 1714 315 191 0 0 chr3 148060555 148060618 -11539165 + CT-rich Low_complexity Low_complexity 1 63 0 9 1714 315 357 84 0 chr3 148060618 148060761 -11539022 - HAL1-3A_ME LINE L1 -419 2439 2285 9 1714 402 21 0 0 chr3 148062006 148062053 -11537730 + (CAA)n Simple_repeat Simple_repeat 3 49 0 9 1714 23 33 0 0 chr3 148062687 148062717 -11537066 + AT_rich Low_complexity Low_complexity 1 30 0 9 1714 446 197 8 0 chr3 148062970 148063087 -11536696 + GA-rich Low_complexity Low_complexity 2 119 0 9 1714 906 10 0 0 chr3 148063696 148063799 -11535984 + (GA)n Simple_repeat Simple_repeat 1 103 0 9 1714 4226 139 16 11 chr3 148064306 148064571 -11535212 + Lx LINE L1 5131 5393 -490 9 1714 3158 57 23 0 chr3 148064571 148064958 -11534825 - MTA_Mm LTR MaLR 0 396 1 9 1714 5761 105 36 24 chr3 148064958 148066044 -11533739 + Lx LINE L1 5394 6498 -156 9 1714 201 74 0 0 chr3 148066286 148066313 -11533470 + (A)n Simple_repeat Simple_repeat 1 27 0 1 1714 378 0 0 0 chr3 148067292 148067334 -11532449 + (TG)n Simple_repeat Simple_repeat 2 43 0 1 1714 398 344 25 0 chr3 148068189 148068311 -11531472 + B1F SINE Alu 9 133 -16 1 1714 475 102 23 0 chr3 148068556 148068644 -11531139 + (TAGA)n Simple_repeat Simple_repeat 2 91 0 1 1714 1317 202 131 64 chr3 148068872 148069232 -11530551 - ORR1C2 LTR MaLR 0 384 1 1 1714 687 281 53 56 chr3 148069444 148069802 -11529981 + Lx9 LINE L1 7077 7433 -211 1 1714 1077 44 0 0 chr3 148069804 148069939 -11529844 + (CA)n Simple_repeat Simple_repeat 2 136 0 1 1714 234 100 50 0 chr3 148071836 148071896 -11527887 + (TTTG)n Simple_repeat Simple_repeat 2 64 0 1 1714 201 156 0 0 chr3 148073183 148073215 -11526568 + (CAA)n Simple_repeat Simple_repeat 2 33 0 1 1714 286 309 0 24 chr3 148073634 148073717 -11526066 + PB1D10 SINE Alu 35 115 -2 1 1714 478 261 160 34 chr3 148074416 148074654 -11525129 + Lx8 LINE L1 7206 7473 0 1 1714 293 221 51 34 chr3 148074688 148074805 -11524978 + (CATATA)n Simple_repeat Simple_repeat 6 124 0 1 1714 827 61 0 9 chr3 148075043 148075158 -11524625 + (TTTC)n Simple_repeat Simple_repeat 3 116 0 1 1714 212 278 97 0 chr3 148076535 148076607 -11523176 - L3 LINE CR1 -48 4441 4363 1 1714 338 351 57 105 chr3 148077142 148077476 -11522307 - MLT1F1 LTR MaLR -126 422 105 1 1714 686 344 183 15 chr3 148077755 148078245 -11521538 - MLT1F1-int LTR MaLR -161 1328 685 1 1714 990 148 0 16 chr3 148078296 148078481 -11521302 - Lx2 LINE L1 -2 6995 6814 1 1714 366 280 30 85 chr3 148078573 148078737 -11521046 + RSINE1 SINE B4 11 165 0 1 1714 1069 313 58 25 chr3 148078805 148079290 -11520493 - MLT1F1-int LTR MaLR -806 683 183 1 1714 497 346 102 30 chr3 148079445 148079817 -11519966 - MLT1F1 LTR MaLR -8 561 163 1 1714 243 0 0 0 chr3 148079832 148079859 -11519924 + (TTCA)n Simple_repeat Simple_repeat 2 28 0 1 1714 415 48 32 0 chr3 148079859 148079921 -11519862 + (TG)n Simple_repeat Simple_repeat 2 65 0 1 1714 484 301 103 0 chr3 148079924 148080060 -11519723 - B3A SINE B2 -48 150 1 1 1714 21 36 0 0 chr3 148080329 148080357 -11519426 + AT_rich Low_complexity Low_complexity 1 28 0 1 1714 421 303 62 26 chr3 148082271 148082464 -11517319 - RMER5 LTR ERV1 -6 528 329 1 1714 401 262 62 62 chr3 148083244 148083374 -11516409 - RMER5 LTR ERV1 -357 177 48 1 1714 216 418 10 67 chr3 148083989 148084197 -11515586 + B4A SINE B4 91 286 -6 1 1714 268 324 65 92 chr3 148084717 148084870 -11514913 + B1F SINE Alu 1 149 0 1 1714 410 231 64 18 chr3 148085680 148085790 -11513993 - MIRc SINE MIR -88 180 66 1 1714 567 309 61 11 chr3 148086730 148086910 -11512873 - B4A SINE B4 -41 251 63 1 1714 918 127 0 0 chr3 148086951 148087109 -11512674 + (TG)n Simple_repeat Simple_repeat 2 159 0 1 1714 212 338 12 0 chr3 148089070 148089150 -11510633 - MER5A DNA MER1_type -98 91 11 1 1714 470 149 11 0 chr3 148090180 148090267 -11509516 + CT-rich Low_complexity Low_complexity 1 88 0 1 1714 632 102 10 0 chr3 148091243 148091341 -11508442 + (TAGA)n Simple_repeat Simple_repeat 2 100 0 1 1714 444 324 70 74 chr3 148093475 148093718 -11506065 + B4 SINE B4 35 276 -16 1 1714 960 122 0 3 chr3 148093956 148094316 -11505467 + (GGA)n Simple_repeat Simple_repeat 1 358 0 1 1714 960 113 0 0 chr3 148094349 148094686 -11505097 + (GGA)n Simple_repeat Simple_repeat 1 337 0 1 1714 302 290 111 16 chr3 148095118 148095244 -11504539 + MLT1D LTR MaLR 19 156 -349 1 1714 212 100 25 0 chr3 148095274 148095314 -11504469 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 1714 468 0 0 0 chr3 148095314 148095365 -11504418 + (GA)n Simple_repeat Simple_repeat 2 53 0 1 1714 246 32 0 0 chr3 148095710 148095741 -11504042 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1 1714 716 345 5 9 chr3 148097428 148097639 -11502144 + B4 SINE B4 7 216 -76 1 1714 600 53 0 0 chr3 148097639 148097715 -11502068 + (GAAA)n Simple_repeat Simple_repeat 2 77 0 1 1714 696 352 21 35 chr3 148097715 148097791 -11501992 + B4A SINE B4 218 289 -3 1 1714 1336 271 3 16 chr3 148098586 148098965 -11500818 - Lx9 LINE L1 -424 7220 6847 1 1714 1005 268 100 10 chr3 148098968 148099367 -11500416 + Lx9 LINE L1 7204 7638 -6 1 1714 564 15 0 0 chr3 148099531 148099596 -11500187 + (GA)n Simple_repeat Simple_repeat 2 66 0 1 1714 716 245 0 34 chr3 148099637 148099785 -11499998 - B1_Mur4 SINE Alu 0 150 8 1 1714 328 274 52 123 chr3 148099668 148099822 -11499961 - MT2B LTR ERVL -322 279 137 1 1714 189 0 0 0 chr3 148100212 148100233 -11499550 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 1 1714 5024 72 10 1 chr3 148100594 148101273 -11498510 - L1_Mus3 LINE L1 -5 6633 5949 1 1714 4624 133 14 1 chr3 148101273 148102040 -11497743 + L1_Mm LINE L1 4662 5438 -445 1 1714 547 295 0 35 chr3 148102382 148102526 -11497257 + RSINE1 SINE B4 8 146 -19 1 1714 255 254 0 17 chr3 148103018 148103078 -11496705 - MLT2C1 LTR ERVL -318 79 21 1 1714 458 295 9 9 chr3 148103204 148103317 -11496466 + ID_B1 SINE B4 87 199 -25 1 1714 1109 118 0 6 chr3 148103357 148103536 -11496247 + (GGAA)n Simple_repeat Simple_repeat 3 180 0 1 1714 423 0 0 0 chr3 148103694 148103741 -11496042 + (TTATA)n Simple_repeat Simple_repeat 5 51 0 1 1714 762 132 18 6 chr3 148103969 148104135 -11495648 + (GTATG)n Simple_repeat Simple_repeat 1 167 0 1 1714 247 260 125 52 chr3 148104263 148104511 -11495272 + L1M5 LINE L1 5643 5908 -271 1 1714 339 286 85 23 chr3 148105550 148105679 -11494104 - L3 LINE CR1 0 4489 4353 1 1714 543 69 0 0 chr3 148106569 148106641 -11493142 + (CATA)n Simple_repeat Simple_repeat 2 73 0 1 1714 213 39 0 0 chr3 148106652 148106678 -11493105 + (TG)n Simple_repeat Simple_repeat 1 26 0 1 1714 24 96 0 0 chr3 148107307 148107380 -11492403 + AT_rich Low_complexity Low_complexity 1 73 0 1 1714 249 98 0 0 chr3 148107649 148107690 -11492093 + (TTTTG)n Simple_repeat Simple_repeat 4 44 0 1 1714 414 0 0 0 chr3 148109375 148109421 -11490362 + (CA)n Simple_repeat Simple_repeat 2 47 0 1 1714 1907 265 64 13 chr3 148109523 148110119 -11489664 + ERVL-E-int LTR ERVL 4013 4638 -1029 1 1714 1109 105 6 0 chr3 148110716 148110887 -11488896 + (AGGGGG)n Simple_repeat Simple_repeat 5 176 0 1 1715 215 344 108 54 chr3 148114609 148114904 -11484879 - L2 LINE L2 -954 2465 2155 1 1715 1003 185 97 5 chr3 148115382 148115588 -11484195 - URR1B DNA MER1_type 0 225 1 1 1715 217 236 91 0 chr3 148115843 148115898 -11483885 + MIR SINE MIR 197 256 -6 1 1715 242 333 0 0 chr3 148116717 148116780 -11483003 - MIR SINE MIR -55 153 91 1 1715 373 115 25 13 chr3 148117098 148117177 -11482606 - Lx3_Mus LINE L1 -18 6991 6912 1 1715 460 253 33 56 chr3 148117276 148117456 -11482327 + Lx6 LINE L1 7277 7452 -8 1 1715 755 187 0 21 chr3 148119658 148119669 -11480114 - B1_Mm SINE Alu 0 147 139 1 1715 468 0 0 0 chr3 148119669 148119721 -11480062 + (GTTTG)n Simple_repeat Simple_repeat 2 53 0 1 1715 755 187 0 21 chr3 148119721 148119851 -11479932 - B1_Mm SINE Alu -9 138 9 1 1715 278 266 33 99 chr3 148119747 148119868 -11479915 - MT2B LTR ERVL -337 264 152 1 1715 1023 300 35 13 chr3 148120440 148120835 -11478948 - Lx7 LINE L1 -583 7113 6710 1 1715 183 42 0 0 chr3 148122946 148122970 -11476813 + (TC)n Simple_repeat Simple_repeat 1 24 0 1 1715 213 39 0 0 chr3 148123198 148123224 -11476559 + (TTTG)n Simple_repeat Simple_repeat 1 26 0 1 1715 528 227 101 0 chr3 148124998 148125117 -11474666 + ID_B1 SINE B4 93 223 -1 1 1715 261 0 0 0 chr3 148125193 148125222 -11474561 + (TC)n Simple_repeat Simple_repeat 2 30 0 1 1715 801 21 0 0 chr3 148125222 148125316 -11474467 + (TG)n Simple_repeat Simple_repeat 2 96 0 1 1715 197 65 32 0 chr3 148125656 148125687 -11474096 + (AGGGGG)n Simple_repeat Simple_repeat 5 36 0 1 1715 180 97 0 0 chr3 148126535 148126566 -11473217 + (A)n Simple_repeat Simple_repeat 1 31 0 1 1715 535 168 68 112 chr3 148126591 148126619 -11473164 + MT2B LTR ERVL 136 237 -364 1 1715 911 74 0 0 chr3 148126619 148126740 -11473043 + B1_Mus1 SINE Alu 1 121 -27 1 1715 535 168 68 112 chr3 148126740 148126752 -11473031 + MT2B LTR ERVL 238 289 -312 1 1715 345 159 0 0 chr3 148126760 148126823 -11472960 + (TG)n Simple_repeat Simple_repeat 2 64 0 1 1715 187 358 92 14 chr3 148126868 148127028 -11472755 - MIRc SINE MIR -46 222 55 1 1715 308 278 35 44 chr3 148127109 148127222 -11472561 + PB1D10 SINE Alu 1 112 -5 1 1715 634 305 25 59 chr3 148127372 148127574 -11472209 + B3A SINE B2 4 198 0 1 1715 187 111 93 0 chr3 148128636 148128690 -11471093 + (GTTTG)n Simple_repeat Simple_repeat 1 59 0 1 1715 1251 56 0 0 chr3 148128884 148129044 -11470739 + (TC)n Simple_repeat Simple_repeat 1 160 0 1 1715 633 336 64 62 chr3 148129175 148129628 -11470155 - MT2A LTR ERVL -73 460 7 1 1715 264 212 0 0 chr3 148130168 148130234 -11469549 + (TA)n Simple_repeat Simple_repeat 1 66 0 1 1715 393 198 0 0 chr3 148130477 148130568 -11469215 + (TA)n Simple_repeat Simple_repeat 2 92 0 1 1715 216 0 0 0 chr3 148130568 148130592 -11469191 + (TG)n Simple_repeat Simple_repeat 2 25 0 1 1715 263 93 0 23 chr3 148130594 148130638 -11469145 + (GA)n Simple_repeat Simple_repeat 2 44 0 1 1715 280 288 0 0 chr3 148131359 148131439 -11468344 - Lx5 LINE L1 -527 6523 6460 1 1715 4037 70 46 2 chr3 148132746 148133287 -11466496 - L1_Mus2 LINE L1 -1 6565 6001 1 1715 666 88 26 17 chr3 148133705 148133821 -11465962 + (TTCC)n Simple_repeat Simple_repeat 1 117 0 1 1715 434 284 26 0 chr3 148133839 148133955 -11465828 - B1_Mm SINE Alu -28 119 1 1 1715 396 0 0 0 chr3 148135127 148135171 -11464612 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 1 1715 615 51 0 0 chr3 148135630 148135709 -11464074 + (TG)n Simple_repeat Simple_repeat 1 79 0 1 1715 471 63 0 0 chr3 148136399 148136462 -11463321 + (TG)n Simple_repeat Simple_repeat 1 63 0 1 1715 405 0 0 0 chr3 148136462 148136506 -11463277 + (GA)n Simple_repeat Simple_repeat 1 45 0 1 1715 210 71 0 0 chr3 148136985 148137013 -11462770 + (TTC)n Simple_repeat Simple_repeat 3 30 0 1 1715 199 318 15 0 chr3 148138011 148138077 -11461706 + MIR SINE MIR 102 168 -94 1 1715 22 35 0 0 chr3 148139626 148139655 -11460128 + AT_rich Low_complexity Low_complexity 1 29 0 2 1715 446 290 80 40 chr3 148140147 148140348 -11459435 + MLT1B LTR MaLR 167 375 -15 2 1715 436 360 71 60 chr3 148140748 148141114 -11458669 + ORR1D2 LTR MaLR 1 370 0 2 1715 378 327 23 57 chr3 148141674 148141849 -11457934 + B3A SINE B2 25 193 -5 2 1715 306 287 70 75 chr3 148142687 148142932 -11456851 + MTE2a LTR MaLR 106 359 -20 2 1715 181 302 0 31 chr3 148143100 148143165 -11456618 - L3 LINE CR1 -3514 975 913 2 1715 701 328 87 11 chr3 148143980 148144245 -11455538 + B4A SINE B4 6 290 -2 2 1715 533 165 8 0 chr3 148144961 148145082 -11454701 + (CA)n Simple_repeat Simple_repeat 1 122 0 2 1715 22 70 0 0 chr3 148145519 148145562 -11454221 + AT_rich Low_complexity Low_complexity 1 43 0 2 1715 21 0 0 0 chr3 148145748 148145769 -11454014 + AT_rich Low_complexity Low_complexity 1 21 0 2 1715 258 32 0 0 chr3 148146387 148146418 -11453365 + (CAAAA)n Simple_repeat Simple_repeat 4 34 0 2 1715 307 89 36 0 chr3 148147515 148147571 -11452212 + (TAGA)n Simple_repeat Simple_repeat 4 61 0 2 1715 1021 103 12 6 chr3 148147574 148147740 -11452043 + (GAAA)n Simple_repeat Simple_repeat 4 170 0 2 1715 253 155 35 0 chr3 148147751 148147809 -11451974 + (TAGA)n Simple_repeat Simple_repeat 1 60 0 2 1715 810 115 18 0 chr3 148147822 148147987 -11451796 + (TAGA)n Simple_repeat Simple_repeat 3 170 0 2 1715 685 157 12 0 chr3 148148032 148148204 -11451579 + (TAGA)n Simple_repeat Simple_repeat 3 176 0 2 1715 996 286 58 21 chr3 148148269 148148598 -11451185 - MLT2D LTR ERVL -56 358 18 2 1715 392 342 79 132 chr3 148148860 148149163 -11450620 + B4 SINE B4 6 292 0 2 1715 622 222 9 0 chr3 148149163 148149398 -11450385 + (CA)n Simple_repeat Simple_repeat 1 237 0 2 1715 624 201 0 22 chr3 148149414 148149597 -11450186 + (CA)n Simple_repeat Simple_repeat 2 180 0 2 1715 210 209 23 0 chr3 148149599 148149642 -11450141 + (CATATA)n Simple_repeat Simple_repeat 3 46 0 2 1715 468 51 0 0 chr3 148149684 148149743 -11450040 + (GA)n Simple_repeat Simple_repeat 1 59 0 2 1715 626 193 218 46 chr3 148149964 148150138 -11449645 + B3 SINE B2 9 212 -4 2 1715 398 116 29 0 chr3 148151712 148151781 -11448002 + (TCCC)n Simple_repeat Simple_repeat 2 72 0 2 1715 1004 86 6 0 chr3 148153195 148153357 -11446426 + (TC)n Simple_repeat Simple_repeat 2 164 0 2 1715 333 0 0 0 chr3 148153357 148153393 -11446390 + (TG)n Simple_repeat Simple_repeat 2 38 0 2 1715 352 303 122 14 chr3 148154552 148154699 -11445084 + RSINE1 SINE B4 3 165 0 2 1715 194 233 0 16 chr3 148154728 148154789 -11444994 + GA-rich Low_complexity Low_complexity 3 62 0 2 1715 715 326 29 44 chr3 148155003 148155314 -11444469 - MTE2b LTR MaLR -74 305 1 2 1715 21 0 0 0 chr3 148155664 148155685 -11444098 + AT_rich Low_complexity Low_complexity 1 21 0 2 1715 285 344 47 23 chr3 148156490 148156618 -11443165 + MLT1B LTR MaLR 6 136 -254 2 1715 241 261 0 0 chr3 148156669 148156715 -11443068 + MLT1B LTR MaLR 343 388 -79 2 1715 317 159 0 16 chr3 148157939 148158003 -11441780 + (ATG)n Simple_repeat Simple_repeat 2 64 0 2 1715 386 382 0 0 chr3 148161489 148161612 -11438171 - MLT2B2 LTR ERVL -69 493 371 2 1715 402 343 21 21 chr3 148161692 148161835 -11437948 - MLT2B2 LTR ERVL -359 156 14 2 1715 1430 244 108 18 chr3 148162478 148162812 -11436971 - ORR1D1 LTR MaLR -10 364 1 2 1715 270 224 56 69 chr3 148163376 148163448 -11436335 + B4A SINE B4 8 78 -214 2 1715 186 167 0 0 chr3 148163663 148163699 -11436084 + GA-rich Low_complexity Low_complexity 3 38 0 2 1715 532 324 170 16 chr3 148164546 148165069 -11434714 - L2a LINE L2 -9 3417 2819 2 1715 180 311 175 24 chr3 148165181 148165392 -11434391 - L2a LINE L2 -1495 1924 1682 2 1715 699 323 92 6 chr3 148165565 148165892 -11433891 + ORR1E LTR MaLR 4 358 -1 2 1715 389 272 140 53 chr3 148165921 148166092 -11433691 - B3A SINE B2 -9 189 4 2 1715 1712 259 83 26 chr3 148166127 148166623 -11433160 + RMER19C LTR ERVK 88 611 0 2 1715 1117 288 80 20 chr3 148166693 148167044 -11432739 + MTEa LTR MaLR 3 374 -5 2 1715 180 0 0 0 chr3 148167198 148167218 -11432565 + (A)n Simple_repeat Simple_repeat 1 20 0 2 1715 306 273 125 62 chr3 148167270 148167430 -11432353 - MLT1N2 LTR MaLR -381 181 12 2 1715 195 317 35 35 chr3 148167438 148167523 -11432260 + L2b LINE L2 3286 3370 -5 2 1715 193 386 11 0 chr3 148167770 148167858 -11431925 - L2a LINE L2 -5 3421 3333 2 1715 757 115 76 2 chr3 148167866 148168000 -11431783 + ORR1A2 LTR MaLR 1 141 -185 2 1715 374 119 0 17 chr3 148167989 148168049 -11431734 + ORR1A2 LTR MaLR 260 318 -8 2 1715 603 60 0 0 chr3 148168194 148168278 -11431505 + (TG)n Simple_repeat Simple_repeat 2 85 0 2 1715 529 319 115 9 chr3 148168278 148168496 -11431287 - B4 SINE B4 -49 243 3 2 1715 256 210 0 24 chr3 148168511 148168594 -11431189 + CT-rich Low_complexity Low_complexity 1 81 0 2 1715 366 290 134 10 chr3 148168678 148168880 -11430903 - L1M5 LINE L1 -393 5731 5505 2 1715 180 0 0 0 chr3 148168883 148168903 -11430880 + (TAAAA)n Simple_repeat Simple_repeat 2 21 0 2 1715 221 229 127 14 chr3 148169241 148169253 -11430530 + B1_Mur1 SINE Alu 66 144 -5 2 1715 262 224 0 17 chr3 148169253 148169312 -11430471 + ID_B1 SINE B4 162 219 -5 2 1715 473 0 0 17 chr3 148169662 148169720 -11430063 + (TA)n Simple_repeat Simple_repeat 1 57 0 2 1715 282 335 77 84 chr3 148170521 148170830 -11428953 - MTEa LTR MaLR -55 324 1 2 1715 2321 329 44 25 chr3 148170830 148171754 -11428029 - MTE-int LTR MaLR -53 1527 586 2 1715 933 311 81 6 chr3 148171757 148172077 -11427706 - MTE-int LTR MaLR -1225 355 12 2 1715 542 341 62 68 chr3 148172115 148172423 -11427360 - ORR1E LTR MaLR -40 319 14 2 1715 494 302 87 94 chr3 148172568 148172867 -11426916 + MLT1A0 LTR MaLR 69 365 0 2 1715 400 318 59 44 chr3 148173948 148174221 -11425562 + B4A SINE B4 5 281 -11 2 1715 201 133 0 0 chr3 148174226 148174256 -11425527 + (CATG)n Simple_repeat Simple_repeat 4 33 0 2 1715 562 200 0 0 chr3 148174543 148174658 -11425125 - B3 SINE B2 -101 115 1 2 1715 1112 82 0 13 chr3 148174883 148175032 -11424751 + B1_Mus1 SINE Alu 1 147 -1 2 1715 208 65 30 75 chr3 148175059 148175126 -11424657 + (GTTTG)n Simple_repeat Simple_repeat 2 65 0 2 1715 207 0 0 0 chr3 148175319 148175342 -11424441 + (TTTG)n Simple_repeat Simple_repeat 3 25 0 2 1715 1173 106 0 0 chr3 148175424 148175604 -11424179 + (TG)n Simple_repeat Simple_repeat 1 180 0 2 1715 321 26 0 0 chr3 148177413 148177451 -11422332 + (TC)n Simple_repeat Simple_repeat 2 39 0 2 1715 405 0 0 0 chr3 148177451 148177495 -11422288 + (TG)n Simple_repeat Simple_repeat 2 46 0 2 1715 240 367 39 20 chr3 148177965 148178118 -11421665 - L2 LINE L2 -451 2968 2813 2 1715 2566 232 80 8 chr3 148178567 148179310 -11420473 - RMER1B Other Other -3 1063 201 2 1715 237 259 143 66 chr3 148179881 148179972 -11419811 - L2a LINE L2 -21 3366 3269 2 1715 292 397 26 19 chr3 148180253 148180407 -11419376 - L2a LINE L2 -214 3212 3058 2 1715 333 0 0 0 chr3 148180688 148180725 -11419058 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 2 1715 376 214 0 18 chr3 148180731 148180845 -11418938 + GA-rich Low_complexity Low_complexity 1 112 0 2 1715 470 392 86 36 chr3 148180861 148181201 -11418582 - L2a LINE L2 -769 2650 2278 2 1715 474 33 0 0 chr3 148181201 148181261 -11418522 + (TG)n Simple_repeat Simple_repeat 2 61 0 2 1715 470 392 86 36 chr3 148181261 148181504 -11418279 - L2a LINE L2 -1142 2277 2038 2 1715 2551 155 198 9 chr3 148182385 148182965 -11416818 - RMER6C LTR ERVK 0 690 1 2 1715 312 299 21 0 chr3 148183253 148183350 -11416433 + GA-rich Low_complexity Low_complexity 1 99 0 2 1715 373 286 88 36 chr3 148183688 148183880 -11415903 + L1MA6 LINE L1 5804 6005 -295 2 1715 369 0 0 0 chr3 148184467 148184508 -11415275 + (T)n Simple_repeat Simple_repeat 1 41 0 2 1715 4660 250 56 10 chr3 148185747 148187012 -11412771 - Lx6 LINE L1 -10 7450 6128 2 1715 2004 141 64 27 chr3 148187014 148187423 -11412360 + L1_Mur3 LINE L1 4971 5394 -486 2 1715 2574 56 62 0 chr3 148187449 148187771 -11412012 - ORR1A1 LTR MaLR 0 346 5 2 1715 1056 215 163 15 chr3 148188834 148189160 -11410623 - ORR1D1 LTR MaLR 0 374 1 2 1715 297 0 0 0 chr3 148189419 148189452 -11410331 + (TG)n Simple_repeat Simple_repeat 2 34 0 2 1715 561 322 66 89 chr3 148189639 148189987 -11409796 + MTEa LTR MaLR 2 341 -38 2 1715 23 54 0 0 chr3 148190063 148190100 -11409683 + AT_rich Low_complexity Low_complexity 1 37 0 2 1715 264 59 0 0 chr3 148191031 148191065 -11408718 + (TA)n Simple_repeat Simple_repeat 2 35 0 2 1715 184 267 0 0 chr3 148193449 148193494 -11406289 - MIR SINE MIR -93 169 125 2 1715 265 191 118 0 chr3 148193820 148193888 -11405895 + LTR48 LTR ERV1 90 165 -622 2 1715 280 314 29 10 chr3 148195928 148196031 -11403752 - LFSINE_Vert SINE SINE -2 457 353 2 1715 22 0 0 0 chr3 148196237 148196259 -11403524 + AT_rich Low_complexity Low_complexity 1 22 0 2 1715 677 324 23 5 chr3 148196573 148196787 -11402996 + B4 SINE B4 1 218 -74 2 1715 369 43 0 0 chr3 148196816 148196863 -11402920 + (CATA)n Simple_repeat Simple_repeat 2 48 0 2 1715 306 73 0 0 chr3 148196966 148197007 -11402776 + (CA)n Simple_repeat Simple_repeat 2 42 0 2 1715 486 0 0 0 chr3 148197007 148197060 -11402723 + (GA)n Simple_repeat Simple_repeat 2 55 0 2 1715 252 236 184 92 chr3 148197070 148197168 -11402615 + PB1D10 SINE Alu 10 116 -1 2 1715 314 327 111 9 chr3 148197175 148197283 -11402500 + PB1D7 SINE Alu 1 119 -1 2 1715 333 0 0 0 chr3 148197818 148197855 -11401928 + (CA)n Simple_repeat Simple_repeat 2 38 0 2 1715 435 107 0 35 chr3 148198219 148198306 -11401477 + (TA)n Simple_repeat Simple_repeat 2 85 0 2 1715 823 301 4 51 chr3 148198482 148198717 -11401066 - B4A SINE B4 -68 224 1 2 1715 198 148 56 0 chr3 148198952 148199006 -11400777 + (TA)n Simple_repeat Simple_repeat 2 58 0 2 1715 1891 134 77 27 chr3 148199024 148199361 -11400422 + ORR1B1 LTR MaLR 41 394 0 2 1715 582 278 33 60 chr3 148199611 148199795 -11399988 + B3 SINE B2 5 183 -15 2 1715 218 324 139 0 chr3 148200244 148200352 -11399431 + B1F1 SINE Alu 17 139 -10 2 1715 318 306 18 36 chr3 148200255 148200367 -11399416 + ID_B1 SINE B4 114 223 -1 2 1715 337 315 84 30 chr3 148202469 148202600 -11397183 - MIRb SINE MIR -103 165 28 3 1715 21 36 0 0 chr3 148203378 148203406 -11396377 + AT_rich Low_complexity Low_complexity 1 28 0 3 1715 1241 34 7 0 chr3 148203532 148203678 -11396105 - B1_Mus2 SINE Alu 0 147 1 3 1715 429 232 10 39 chr3 148203861 148203964 -11395819 + B1_Mur1 SINE Alu 42 141 -8 3 1715 262 333 54 0 chr3 148203973 148204066 -11395717 + ID_B1 SINE B4 91 188 -36 3 1715 422 233 25 0 chr3 148204066 148204225 -11395558 + CT-rich Low_complexity Low_complexity 3 165 0 3 1715 228 300 104 57 chr3 148204365 148204471 -11395312 + PB1D10 SINE Alu 2 112 -5 3 1715 387 301 110 0 chr3 148205279 148205442 -11394341 + MLT1A1 LTR MaLR 73 253 -155 3 1715 2660 63 2 147 chr3 148205566 148206029 -11393754 + MTA_Mm LTR MaLR 1 396 0 3 1715 910 282 172 14 chr3 148206460 148207031 -11392752 + Lx8 LINE L1 6808 7468 -5 3 1715 233 239 45 11 chr3 148207182 148207271 -11392512 - Lx7 LINE L1 0 7696 7605 3 1715 306 132 0 0 chr3 148208776 148208829 -11390954 + (T)n Simple_repeat Simple_repeat 1 53 0 3 1715 326 13 12 106 chr3 148209097 148209182 -11390601 + (CAAA)n Simple_repeat Simple_repeat 2 78 0 3 1715 375 320 170 0 chr3 148209253 148209406 -11390377 + ID_B1 SINE B4 30 208 -16 3 1715 570 76 141 25 chr3 148210052 148210173 -11389610 + L1_Mus3 LINE L1 6503 6637 -1 3 1715 25 31 0 0 chr3 148210173 148210205 -11389578 + AT_rich Low_complexity Low_complexity 1 32 0 3 1715 316 231 46 0 chr3 148212666 148212731 -11387052 - B1F2 SINE Alu -58 91 24 3 1715 468 0 0 0 chr3 148212769 148212821 -11386962 + (TG)n Simple_repeat Simple_repeat 1 52 0 3 1715 371 192 74 37 chr3 148212845 148212926 -11386857 + B4A SINE B4 2 85 -207 3 1715 461 236 177 7 chr3 148213161 148213302 -11386481 + ID_B1 SINE B4 1 165 -59 3 1715 224 290 32 0 chr3 148213529 148213591 -11386192 - ID4_ SINE ID -19 64 1 3 1715 23 0 0 0 chr3 148213720 148213743 -11386040 + AT_rich Low_complexity Low_complexity 1 23 0 3 1715 186 103 0 0 chr3 148214025 148214054 -11385729 + (TAGA)n Simple_repeat Simple_repeat 1 29 0 3 1715 324 0 0 0 chr3 148214489 148214525 -11385258 + (TG)n Simple_repeat Simple_repeat 1 36 0 3 1715 662 297 105 30 chr3 148214551 148214818 -11384965 - B4A SINE B4 -4 288 2 3 1715 23 0 0 0 chr3 148215372 148215395 -11384388 + AT_rich Low_complexity Low_complexity 1 23 0 3 1715 330 261 22 0 chr3 148215773 148215907 -11383876 - Lx9 LINE L1 -1 7643 7507 3 1715 649 143 17 0 chr3 148216026 148216145 -11383638 + Lx9 LINE L1 6945 7065 -579 3 1715 764 268 64 0 chr3 148217529 148217749 -11382034 + B4A SINE B4 50 283 -9 3 1715 34 42 0 0 chr3 148218035 148218083 -11381700 + AT_rich Low_complexity Low_complexity 1 48 0 3 1715 299 307 0 82 chr3 148219303 148219413 -11380370 + B4 SINE B4 185 285 -7 3 1715 354 61 0 0 chr3 148219429 148219478 -11380305 + (CA)n Simple_repeat Simple_repeat 2 50 0 3 1715 363 192 0 0 chr3 148219592 148219670 -11380113 + GA-rich Low_complexity Low_complexity 3 80 0 3 1715 525 218 218 0 chr3 148220024 148220198 -11379585 + B3 SINE B2 1 212 -4 3 1715 345 329 42 24 chr3 148220304 148220469 -11379314 - MTEb LTR MaLR -11 368 201 3 1715 446 206 28 11 chr3 148220471 148220648 -11379135 + (CAGAGA)n Simple_repeat Simple_repeat 1 180 0 3 1715 396 231 101 9 chr3 148220891 148221000 -11378783 - RSINE1 SINE B4 -43 122 4 3 1715 920 9 9 0 chr3 148221483 148221592 -11378191 + (GAGAA)n Simple_repeat Simple_repeat 2 111 0 3 1715 28 0 0 0 chr3 148222461 148222489 -11377294 + AT_rich Low_complexity Low_complexity 1 28 0 3 1715 192 70 0 65 chr3 148223098 148223144 -11376639 + (GAAA)n Simple_repeat Simple_repeat 2 44 0 3 1715 261 298 171 37 chr3 148223306 148223470 -11376313 - LFSINE_Vert SINE SINE -6 453 268 3 1715 256 363 21 43 chr3 148224204 148224345 -11375438 - LFSINE_Vert SINE SINE -313 146 9 3 1715 434 269 94 29 chr3 148224717 148224839 -11374944 + B1F1 SINE Alu 3 135 -14 3 1715 189 0 0 0 chr3 148224839 148224860 -11374923 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 3 1715 434 269 94 29 chr3 148224860 148224875 -11374908 + B1F1 SINE Alu 136 149 0 3 1715 552 229 64 128 chr3 148224972 148225207 -11374576 - Tigger7 DNA MER2_type -13 2478 2259 3 1715 287 349 46 13 chr3 148225283 148225434 -11374349 - Tigger7 DNA MER2_type -2105 386 231 3 1715 477 0 0 0 chr3 148225686 148225739 -11374044 + (TG)n Simple_repeat Simple_repeat 2 54 0 3 1715 306 114 28 14 chr3 148228163 148228234 -11371549 + (CA)n Simple_repeat Simple_repeat 1 72 0 3 1715 1044 114 0 3 chr3 148229330 148229493 -11370290 - L1_Mus1 LINE L1 -393 6174 6033 3 1715 2947 74 10 0 chr3 148229493 148229885 -11369898 + L1_Mus1 LINE L1 6172 6567 0 3 1715 221 171 0 0 chr3 148231218 148231259 -11368524 + A-rich Low_complexity Low_complexity 2 42 0 3 1715 275 269 0 15 chr3 148233163 148233231 -11366552 + PB1D9 SINE Alu 41 107 -13 3 1715 233 29 0 29 chr3 148233231 148233266 -11366517 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 3 1715 390 139 0 0 chr3 148233266 148233338 -11366445 + (CA)n Simple_repeat Simple_repeat 1 72 0 3 1715 1191 266 82 50 chr3 148234159 148234219 -11365564 - MTE2a LTR MaLR 0 379 324 3 1715 1978 142 34 9 chr3 148234219 148234540 -11365243 + ORR1A4 LTR MaLR 1 329 0 3 1715 1191 266 82 50 chr3 148234540 148234843 -11364940 - MTE2a LTR MaLR -56 323 4 3 1715 24 0 0 0 chr3 148237755 148237779 -11362004 + AT_rich Low_complexity Low_complexity 1 24 0 3 1715 1160 129 0 0 chr3 148237925 148238096 -11361687 + B2_Mm2 SINE B2 2 172 -23 3 1715 244 98 89 89 chr3 148238117 148238173 -11361610 + B2_Mm2 SINE B2 46 101 -94 3 1715 25 31 0 0 chr3 148238189 148238221 -11361562 + AT_rich Low_complexity Low_complexity 1 32 0 3 1715 516 205 11 28 chr3 148238228 148238511 -11361272 + (TA)n Simple_repeat Simple_repeat 1 277 0 3 1715 482 293 126 31 chr3 148238747 148238969 -11360814 - MLT1J2 LTR MaLR -168 280 38 3 1715 371 303 43 43 chr3 148239514 148239769 -11360014 - L1ME1 LINE L1 -296 5883 5629 3 1715 366 279 263 4 chr3 148240022 148240286 -11359497 - L1MCa LINE L1 -4276 2746 2396 3 1715 234 238 58 29 chr3 148240369 148240473 -11359310 - L1MCa LINE L1 -4824 2304 2198 3 1715 376 364 98 56 chr3 148240517 148241245 -11358538 - L1MCa LINE L1 -4958 2170 1443 3 1715 477 0 0 0 chr3 148241279 148241332 -11358451 + (GA)n Simple_repeat Simple_repeat 2 54 0 3 1715 372 271 58 26 chr3 148241385 148241540 -11358243 - L1MCa LINE L1 -5148 1275 1116 3 214 392 223 88 6 chr3 148242400 148242579 -11357204 - L1PB4 LINE L1 -255 5901 5702 3 1716 268 185 37 2 chr3 148242687 148242763 -11357020 - L1PB4 LINE L1 -625 5546 5475 3 1716 982 110 7 7 chr3 148242763 148242909 -11356874 - B1_Mus2 SINE Alu 0 147 2 3 1716 248 241 124 83 chr3 148242909 148242977 -11356806 - L1PB4 LINE L1 -696 5475 5396 3 1716 2212 87 48 0 chr3 148243131 148243443 -11356340 + ORR1A2 LTR MaLR 1 327 0 3 1716 210 173 38 19 chr3 148243605 148243711 -11356072 + (TA)n Simple_repeat Simple_repeat 2 109 0 3 1716 1081 331 65 56 chr3 148243814 148244898 -11354885 - L1MEc LINE L1 -5053 1347 261 3 1716 3414 154 98 22 chr3 148244898 148245541 -11354242 - RLTR17 LTR ERVK 0 692 1 3 1716 1081 331 65 56 chr3 148245541 148245741 -11354042 - L1MEc LINE L1 -6140 260 51 3 1716 1930 296 65 29 chr3 148245775 148246663 -11353120 + Lx8 LINE L1 6603 7473 0 3 1716 425 263 15 12 chr3 148246891 148247052 -11352731 - L1MC LINE L1 -670 5454 5292 3 1716 585 273 78 0 chr3 148247515 148247669 -11352114 - B4A SINE B4 -125 167 2 3 1716 210 191 0 0 chr3 148247865 148247912 -11351871 + (CA)n Simple_repeat Simple_repeat 2 48 0 3 1716 288 0 0 0 chr3 148248027 148248059 -11351724 + (TCC)n Simple_repeat Simple_repeat 2 33 0 3 1716 1123 79 0 11 chr3 148248059 148248238 -11351545 + (TTC)n Simple_repeat Simple_repeat 2 178 0 3 1716 902 217 45 195 chr3 148248626 148248920 -11350863 - RLTR25A LTR ERVK -1 1102 866 3 1716 567 0 0 0 chr3 148248920 148248983 -11350800 + (TG)n Simple_repeat Simple_repeat 2 64 0 3 1716 902 217 45 195 chr3 148248983 148249134 -11350649 - RLTR25A LTR ERVK -238 865 724 3 1716 9628 74 2 1 chr3 148249134 148251066 -11348717 - L1Md_F2 LINE L1 -88 6494 4560 3 1716 21 71 0 0 chr3 148251700 148251742 -11348041 + AT_rich Low_complexity Low_complexity 1 42 0 3 1716 579 15 0 0 chr3 148254646 148254714 -11345069 + (CA)n Simple_repeat Simple_repeat 2 69 0 3 1716 3793 44 4 0 chr3 148254990 148255472 -11344311 - L1Md_F2 LINE L1 -78 5805 5322 3 1716 6270 63 5 0 chr3 148255472 148256263 -11343520 + L1Md_F2 LINE L1 5787 6581 -1 3 1716 244 214 36 0 chr3 148256545 148256601 -11343182 + CT-rich Low_complexity Low_complexity 1 58 0 3 1716 387 262 57 19 chr3 148256601 148256706 -11343077 - PB1D9 SINE Alu -6 114 6 3 1716 437 261 89 113 chr3 148257140 148257163 -11342620 + B3A SINE B2 1 24 -174 3 1716 874 124 44 0 chr3 148257163 148257300 -11342483 - B1_Mus2 SINE Alu 0 147 5 3 1716 621 261 89 113 chr3 148257300 148257479 -11342304 + B3 SINE B2 25 216 0 3 1716 27 0 0 0 chr3 148257651 148257678 -11342105 + AT_rich Low_complexity Low_complexity 1 27 0 3 1716 197 284 48 36 chr3 148258994 148259061 -11340722 - L2a LINE L2 -68 3358 3289 3 1716 1518 63 0 0 chr3 148259061 148259251 -11340532 + B2_Mm1a SINE B2 2 191 -2 3 1716 197 284 48 36 chr3 148259251 148259267 -11340516 - L2a LINE L2 -138 3288 3274 3 1716 537 383 76 18 chr3 148259533 148260022 -11339761 - L2a LINE L2 -541 2878 2362 3 1716 317 246 328 0 chr3 148260042 148260185 -11339598 - MTE2b LTR MaLR -4 375 185 3 1716 479 17 17 0 chr3 148260571 148260631 -11339152 + (TTAG)n Simple_repeat Simple_repeat 1 61 0 3 1716 429 20 0 0 chr3 148260879 148260929 -11338854 + (CA)n Simple_repeat Simple_repeat 1 50 0 3 1716 249 33 0 0 chr3 148260929 148260958 -11338825 + (TA)n Simple_repeat Simple_repeat 2 31 0 3 1716 207 0 0 0 chr3 148261845 148261868 -11337915 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 3 1716 6149 183 81 16 chr3 148262413 148262616 -11337167 - RMER12B LTR ERVK 0 1404 1204 3 1716 321 118 0 0 chr3 148262616 148262667 -11337116 + (CAGA)n Simple_repeat Simple_repeat 4 54 0 3 1716 6149 183 81 16 chr3 148262667 148263781 -11336002 - RMER12B LTR ERVK -201 1203 2 3 1716 357 275 12 0 chr3 148264574 148264654 -11335129 - ID4_ SINE ID 0 83 3 3 1716 25 0 0 0 chr3 148264775 148264800 -11334983 + AT_rich Low_complexity Low_complexity 1 25 0 3 1716 597 306 60 11 chr3 148265365 148265550 -11334233 - ID_B1 SINE B4 -19 205 12 3 1716 665 250 18 95 chr3 148266800 148267021 -11332762 - B3A SINE B2 -10 206 3 3 1716 246 306 38 75 chr3 148267145 148267251 -11332532 - PB1D10 SINE Alu -1 116 15 3 1716 405 336 67 27 chr3 148268307 148268658 -11331125 - MLT1C LTR MaLR -18 449 36 3 1716 23 33 0 0 chr3 148268954 148268984 -11330799 + AT_rich Low_complexity Low_complexity 1 30 0 4 1716 936 345 46 5 chr3 148269483 148269856 -11329927 - MT2A LTR ERVL -145 388 1 4 1716 222 156 0 0 chr3 148270022 148270067 -11329716 + (CCA)n Simple_repeat Simple_repeat 3 47 0 4 1716 535 160 0 31 chr3 148270745 148270874 -11328909 + (TATG)n Simple_repeat Simple_repeat 2 126 0 4 1716 513 278 92 63 chr3 148270921 148271205 -11328578 - B4 SINE B4 0 292 1 4 1716 909 19 0 0 chr3 148271374 148271481 -11328302 + (TC)n Simple_repeat Simple_repeat 1 107 0 4 1716 279 0 0 0 chr3 148271481 148271511 -11328272 + (CA)n Simple_repeat Simple_repeat 1 31 0 4 1716 194 343 28 55 chr3 148271528 148271673 -11328110 - MIR3 SINE MIR -53 155 15 4 1716 489 252 8 8 chr3 148273159 148273283 -11326500 + B1_Mur2 SINE Alu 20 143 -6 4 1716 289 269 11 8 chr3 148274436 148274525 -11325258 + MTE2a LTR MaLR 3 92 -327 4 1716 507 335 74 67 chr3 148274589 148274887 -11324896 + MTE2a LTR MaLR 65 364 -15 4 1716 371 194 9 0 chr3 148274910 148275018 -11324765 + (TG)n Simple_repeat Simple_repeat 2 110 0 4 1716 206 262 0 16 chr3 148275027 148275089 -11324694 + (TATATG)n Simple_repeat Simple_repeat 2 62 0 4 1716 320 141 31 0 chr3 148276406 148276470 -11323313 + G-rich Low_complexity Low_complexity 3 68 0 4 1716 516 300 22 71 chr3 148279296 148279522 -11320261 - B3A SINE B2 0 216 2 4 1716 213 145 72 0 chr3 148279562 148279631 -11320152 + (TTGTG)n Simple_repeat Simple_repeat 4 77 0 4 1716 342 0 0 0 chr3 148279878 148279916 -11319867 + (TTTA)n Simple_repeat Simple_repeat 1 38 0 4 1716 443 249 296 67 chr3 148280194 148280501 -11319282 - ORR1E LTR MaLR 0 379 1 4 1716 4510 14 0 0 chr3 148281095 148281588 -11318195 - MT2_Mm LTR ERVL 0 493 1 4 1716 463 178 163 0 chr3 148281831 148281966 -11317817 + Lx9 LINE L1 7438 7594 -50 4 1716 24 32 0 0 chr3 148282024 148282055 -11317728 + AT_rich Low_complexity Low_complexity 1 31 0 4 1716 207 188 0 40 chr3 148282129 148282179 -11317604 + T-rich Low_complexity Low_complexity 3 50 0 4 1716 363 23 0 0 chr3 148282837 148282881 -11316902 + (TTTA)n Simple_repeat Simple_repeat 3 46 0 4 1716 235 361 33 25 chr3 148282962 148283084 -11316699 + MIR SINE MIR 28 150 -112 4 1716 372 183 0 0 chr3 148283432 148283525 -11316258 + (CA)n Simple_repeat Simple_repeat 2 94 0 4 1716 324 157 0 0 chr3 148283534 148283564 -11316219 + (CAGA)n Simple_repeat Simple_repeat 2 31 0 4 1716 222 37 0 0 chr3 148283564 148283591 -11316192 + (GGGA)n Simple_repeat Simple_repeat 2 28 0 4 1716 324 157 0 0 chr3 148283591 148283643 -11316140 + (CAGA)n Simple_repeat Simple_repeat 4 55 0 4 1716 24 0 0 0 chr3 148284615 148284639 -11315144 + AT_rich Low_complexity Low_complexity 1 24 0 4 1716 195 152 0 0 chr3 148285068 148285114 -11314669 + (TG)n Simple_repeat Simple_repeat 2 47 0 4 1716 482 292 63 23 chr3 148285115 148285290 -11314493 - B3A SINE B2 -16 182 1 4 1716 298 271 0 0 chr3 148285601 148285671 -11314112 - B1F SINE Alu -5 144 75 4 1716 257 194 13 130 chr3 148285880 148285957 -11313826 + ID4_ SINE ID 13 80 -3 4 1716 626 68 11 0 chr3 148285989 148286077 -11313706 + (CCCCCT)n Simple_repeat Simple_repeat 6 94 0 4 1716 479 346 28 6 chr3 148286542 148286719 -11313064 - MER58A DNA MER1_type -43 181 1 4 1716 483 18 0 0 chr3 148287770 148287826 -11311957 + (TA)n Simple_repeat Simple_repeat 2 57 0 4 1716 1227 47 0 0 chr3 148287923 148288071 -11311712 - B1_Mus1 SINE Alu 0 148 1 4 1716 193 233 0 37 chr3 148289063 148289170 -11310613 + (TG)n Simple_repeat Simple_repeat 1 103 0 4 1716 236 278 0 34 chr3 148289241 148289416 -11310367 + (TG)n Simple_repeat Simple_repeat 2 170 0 4 1716 3293 48 2 5 chr3 148289443 148289840 -11309943 + MTA_Mm LTR MaLR 1 396 0 4 1716 9223 31 17 0 chr3 148289840 148290920 -11308863 + MTA_Mm-int LTR MaLR 1 1098 0 4 1716 3420 38 0 5 chr3 148290920 148291318 -11308465 + MTA_Mm LTR MaLR 1 396 0 4 1716 361 322 67 50 chr3 148291318 148291558 -11308225 - MLT2D LTR ERVL -66 348 100 4 1716 281 316 35 0 chr3 148292467 148292581 -11307202 + MTEa LTR MaLR 255 372 -7 4 1716 240 330 138 43 chr3 148292654 148293360 -11306423 + L2a LINE L2 2603 3422 -4 4 1716 459 233 0 49 chr3 148296492 148296614 -11303169 + B1_Mur1 SINE Alu 34 149 0 4 1716 203 44 89 0 chr3 148296624 148296669 -11303114 + (CAA)n Simple_repeat Simple_repeat 2 50 0 4 1716 238 185 167 36 chr3 148296765 148296849 -11302934 + MIRb SINE MIR 110 204 -64 4 1716 702 34 0 0 chr3 148297959 148298048 -11301735 + (TC)n Simple_repeat Simple_repeat 2 90 0 4 1716 353 123 0 15 chr3 148298048 148298114 -11301669 + (TG)n Simple_repeat Simple_repeat 1 65 0 4 1716 734 246 71 10 chr3 148298161 148298358 -11301425 - B4 SINE B4 -78 214 6 4 1716 216 239 0 0 chr3 148298989 148299035 -11300748 + PB1D10 SINE Alu 56 101 -16 4 1716 654 255 14 91 chr3 148299040 148299260 -11300523 + Lx8 LINE L1 6739 6941 -532 4 1716 396 0 0 0 chr3 148299331 148299375 -11300408 + (CA)n Simple_repeat Simple_repeat 2 45 0 4 1716 180 111 0 0 chr3 148299504 148299531 -11300252 + (TTTTC)n Simple_repeat Simple_repeat 4 30 0 4 1716 285 51 0 0 chr3 148299538 148299577 -11300206 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 4 1716 1142 75 0 20 chr3 148299577 148299720 -11300063 - B1_Mus2 SINE Alu -6 141 1 4 1716 181 0 0 65 chr3 148300591 148300622 -11299161 + (TTTG)n Simple_repeat Simple_repeat 4 32 0 4 1716 452 215 0 110 chr3 148301997 148302029 -11297754 + MT2B LTR ERVL 137 153 -448 4 1716 969 80 0 14 chr3 148302029 148302169 -11297614 + B1_Mus2 SINE Alu 1 138 -9 4 1716 213 132 0 0 chr3 148302292 148302330 -11297453 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 4 1716 1477 184 29 4 chr3 148302502 148302775 -11297008 - MTC LTR MaLR -19 402 123 4 1716 244 269 0 0 chr3 148302779 148302831 -11296952 - MTC LTR MaLR -248 171 120 4 1716 939 166 43 0 chr3 148303097 148303260 -11296523 - MTC LTR MaLR -250 171 2 4 1716 315 0 0 0 chr3 148304094 148304129 -11295654 + (T)n Simple_repeat Simple_repeat 1 35 0 4 1716 432 0 0 0 chr3 148305734 148305782 -11294001 + (TC)n Simple_repeat Simple_repeat 2 49 0 4 1716 1377 188 4 4 chr3 148306904 148307144 -11292639 - Lx2B LINE L1 -164 6836 6597 4 1716 290 307 20 120 chr3 148307167 148307267 -11292516 + B4A SINE B4 66 155 -137 4 1716 432 89 12 25 chr3 148307407 148307488 -11292295 + (CA)n Simple_repeat Simple_repeat 1 80 0 4 1716 346 336 0 60 chr3 148309104 148309221 -11290562 + B4A SINE B4 5 114 -178 4 1716 398 53 0 17 chr3 148309478 148309536 -11290247 + (CA)n Simple_repeat Simple_repeat 1 57 0 4 1716 459 329 18 6 chr3 148310127 148310292 -11289491 + B3A SINE B2 2 168 -30 4 1716 616 321 41 4 chr3 148310469 148310735 -11289048 - B4A SINE B4 -12 280 5 4 1716 814 247 45 5 chr3 148310769 148310968 -11288815 + B3 SINE B2 3 209 -7 4 1716 310 256 11 12 chr3 148311578 148311681 -11288102 - B4A SINE B4 -195 97 1 4 1716 22 56 0 0 chr3 148312023 148312059 -11287724 + AT_rich Low_complexity Low_complexity 1 36 0 4 1716 303 342 26 0 chr3 148312281 148312433 -11287350 - L1M5 LINE L1 -307 5817 5662 4 1716 354 270 0 73 chr3 148312590 148312686 -11287097 + RSINE1 SINE B4 3 91 -74 4 1716 312 111 0 0 chr3 148312687 148312741 -11287042 + (CA)n Simple_repeat Simple_repeat 2 55 0 4 1716 264 167 0 0 chr3 148312914 148312962 -11286821 + GA-rich Low_complexity Low_complexity 1 48 0 4 1716 318 115 0 0 chr3 148313225 148313286 -11286497 + (T)n Simple_repeat Simple_repeat 1 61 0 4 1716 1857 170 8 57 chr3 148314772 148315158 -11284625 + ORR1C1 LTR MaLR 1 367 -11 4 1716 180 341 70 39 chr3 148315541 148315669 -11284114 + MIRb SINE MIR 117 248 -20 4 1716 295 266 24 37 chr3 148315767 148315849 -11283934 + PB1D10 SINE Alu 2 82 -35 4 1716 689 63 11 0 chr3 148315863 148315958 -11283825 + (GGAA)n Simple_repeat Simple_repeat 4 99 0 4 1716 186 133 0 0 chr3 148316586 148316616 -11283167 + (GGGA)n Simple_repeat Simple_repeat 4 33 0 4 1716 477 0 0 0 chr3 148318208 148318261 -11281522 + (CA)n Simple_repeat Simple_repeat 1 53 0 4 1716 288 200 65 26 chr3 148318796 148318873 -11280910 + LTR40b LTR ERVL 53 132 -330 4 1716 478 267 0 40 chr3 148318911 148319036 -11280747 + B3A SINE B2 4 123 -75 4 1716 341 0 45 0 chr3 148319047 148319091 -11280692 + (CAGA)n Simple_repeat Simple_repeat 3 48 0 4 1716 230 0 0 32 chr3 148319178 148319209 -11280574 + (GTGTG)n Simple_repeat Simple_repeat 3 32 0 4 1716 240 283 17 109 chr3 148319281 148319400 -11280383 + MTEb LTR MaLR 115 222 -157 4 1716 289 289 26 9 chr3 148319740 148319855 -11279928 + LTR40b LTR ERVL 344 460 -2 4 1716 26 0 0 0 chr3 148320284 148320310 -11279473 + AT_rich Low_complexity Low_complexity 1 26 0 4 1716 225 65 0 0 chr3 148320341 148320372 -11279411 + (A)n Simple_repeat Simple_repeat 1 31 0 4 1716 924 170 0 0 chr3 148320432 148320662 -11279121 + GA-rich Low_complexity Low_complexity 1 230 0 4 1716 310 342 123 9 chr3 148321369 148321596 -11278187 - L3b LINE CR1 -162 320 68 4 1716 208 275 0 55 chr3 148322429 148322502 -11277281 + (TATATG)n Simple_repeat Simple_repeat 1 69 0 4 1716 645 14 0 0 chr3 148322507 148322581 -11277202 + (GA)n Simple_repeat Simple_repeat 1 74 0 4 1716 300 232 108 12 chr3 148322800 148322883 -11276900 + B1_Mur1 SINE Alu 24 114 -35 4 1716 8596 31 2 0 chr3 148324060 148325041 -11274742 + L1Md_F2 LINE L1 5587 6569 -13 4 1716 1546 62 0 5 chr3 148325103 148325297 -11274486 + B2_Mm1a SINE B2 1 193 0 4 1716 235 232 0 24 chr3 148325679 148325763 -11274020 + G-rich Low_complexity Low_complexity 1 82 0 4 1716 397 274 92 27 chr3 148327000 148327184 -11272599 - B3A SINE B2 0 198 3 4 1716 218 138 33 33 chr3 148327591 148327651 -11272132 + (TA)n Simple_repeat Simple_repeat 1 60 0 4 1716 219 36 0 0 chr3 148327838 148327866 -11271917 + (CAA)n Simple_repeat Simple_repeat 2 29 0 5 1716 207 188 0 0 chr3 148328032 148328080 -11271703 + (TA)n Simple_repeat Simple_repeat 2 49 0 5 1716 2393 286 68 34 chr3 148328096 148328848 -11270935 + Lx8 LINE L1 6178 6935 -538 5 1716 516 105 0 0 chr3 148328848 148328924 -11270859 + (CA)n Simple_repeat Simple_repeat 1 76 0 5 1716 2393 286 68 34 chr3 148328924 148329078 -11270705 + Lx8 LINE L1 6936 7114 -359 5 1716 24 0 0 0 chr3 148329166 148329190 -11270593 + AT_rich Low_complexity Low_complexity 1 24 0 5 1716 272 238 0 0 chr3 148329923 148329986 -11269797 + tRNA-Ala-GCY_ tRNA tRNA 2 64 -11 5 1716 3045 78 2 8 chr3 148330402 148330804 -11268979 - MTB LTR MaLR 0 400 1 5 1716 602 275 77 59 chr3 148331029 148331315 -11268468 + B4A SINE B4 1 291 -1 5 1716 425 272 78 78 chr3 148332303 148332534 -11267249 + RMER15 LTR ERVL 326 556 -19 5 1716 315 0 0 0 chr3 148332536 148332571 -11267212 + (A)n Simple_repeat Simple_repeat 1 35 0 5 1716 6162 141 1 5 chr3 148332586 148333580 -11266203 - L1_Mur2 LINE L1 -957 4920 3931 5 1716 5531 109 15 0 chr3 148333579 148334357 -11265426 - L1VL4 LINE L1 -5320 982 193 5 1716 4133 129 23 0 chr3 148334358 148334962 -11264821 - RMER19A LTR ERVK -119 618 1 5 1716 280 123 27 0 chr3 148335154 148335227 -11264556 + T-rich Low_complexity Low_complexity 1 75 0 5 1716 1213 56 14 0 chr3 148335228 148335372 -11264411 - B1_Mus2 SINE Alu 0 147 2 5 1716 644 290 57 53 chr3 148335739 148336008 -11263775 - B4A SINE B4 0 292 3 5 1716 201 105 0 50 chr3 148336149 148336189 -11263594 + A-rich Low_complexity Low_complexity 3 40 0 5 1716 337 270 22 22 chr3 148336642 148336733 -11263050 - MER58B DNA MER1_type -2 339 249 5 1716 806 276 57 1 chr3 148337153 148337393 -11262390 - MTE2b LTR MaLR -128 251 1 5 1716 659 294 23 14 chr3 148338216 148338433 -11261350 - Lx8 LINE L1 -139 7334 7116 5 1716 642 89 0 0 chr3 148338860 148338950 -11260833 + (TC)n Simple_repeat Simple_repeat 2 91 0 5 1716 909 219 125 0 chr3 148339800 148339992 -11259791 - B3 SINE B2 0 216 1 5 1716 644 281 78 21 chr3 148340127 148340370 -11259413 - MER44A DNA MER2_type -65 274 18 5 1716 873 274 150 55 chr3 148340472 148340839 -11258944 - MTD LTR MaLR 0 419 18 5 1716 1818 81 120 0 chr3 148341984 148342267 -11257516 - ORR1A2 LTR MaLR -5 322 6 5 1716 471 35 0 0 chr3 148343109 148343166 -11256617 + (CA)n Simple_repeat Simple_repeat 2 58 0 5 1716 367 312 98 38 chr3 148343204 148343387 -11256396 - MIR SINE MIR -2 260 67 5 1716 188 319 0 0 chr3 148343756 148343803 -11255980 - MIRb SINE MIR -40 228 182 5 1716 363 307 7 73 chr3 148344329 148344349 -11255434 + ID SINE ID 68 78 -146 5 1716 537 281 0 15 chr3 148344349 148344479 -11255304 + B1_Mur1 SINE Alu 1 128 -21 5 1716 736 265 48 10 chr3 148344851 148345057 -11254726 + B3 SINE B2 3 216 0 5 1716 483 118 0 0 chr3 148345887 148345963 -11253820 + (TA)n Simple_repeat Simple_repeat 2 77 0 5 1716 22 0 0 0 chr3 148346607 148346629 -11253154 + AT_rich Low_complexity Low_complexity 1 22 0 5 1716 197 59 0 56 chr3 148347570 148347606 -11252177 + (CAGA)n Simple_repeat Simple_repeat 4 37 0 5 1716 287 274 102 44 chr3 148347809 148348015 -11251768 - RMER5 LTR ERV1 -15 519 302 5 1716 206 118 0 0 chr3 148348026 148348060 -11251723 + (CAT)n Simple_repeat Simple_repeat 2 35 0 5 1716 5141 78 29 15 chr3 148348285 148348678 -11251105 - Lx3_Mus LINE L1 -698 6311 5907 5 1716 1284 114 0 0 chr3 148348678 148349013 -11250770 + (TTC)n Simple_repeat Simple_repeat 1 335 0 5 1716 6907 68 4 11 chr3 148349013 148349924 -11249859 - Lx3_Mus LINE L1 -1103 5906 5006 5 1716 5191 94 21 0 chr3 148349924 148350596 -11249187 + Lx3_Mus LINE L1 6323 7008 -1 5 1716 232 359 30 102 chr3 148350651 148350887 -11248896 - L2 LINE L2 -1493 1926 1708 5 1716 531 31 0 0 chr3 148351272 148351337 -11248446 + (CA)n Simple_repeat Simple_repeat 1 65 0 5 1716 314 242 6 32 chr3 148351413 148351571 -11248212 + CT-rich Low_complexity Low_complexity 4 157 0 5 1716 201 74 0 0 chr3 148351579 148351606 -11248177 + (TCTCTG)n Simple_repeat Simple_repeat 2 28 0 5 1716 247 281 12 24 chr3 148351614 148351698 -11248085 + CT-rich Low_complexity Low_complexity 6 88 0 5 1716 184 368 13 26 chr3 148352492 148352570 -11247213 + MIR SINE MIR 77 153 -55 5 1716 237 129 63 16 chr3 148352645 148352708 -11247075 + (CAAA)n Simple_repeat Simple_repeat 2 67 0 5 1716 470 314 48 14 chr3 148352916 148353123 -11246660 + ID_B1 SINE B4 2 215 -9 5 1716 306 0 0 0 chr3 148354619 148354653 -11245130 + (T)n Simple_repeat Simple_repeat 1 34 0 5 1716 327 310 6 0 chr3 148354726 148354821 -11244962 + B1_Mus1 SINE Alu 8 107 -13 5 1716 3694 50 28 0 chr3 148354822 148355279 -11244504 - L1Md_F3 LINE L1 -30 6554 6085 5 1716 213 65 0 0 chr3 148355637 148355668 -11244115 + (T)n Simple_repeat Simple_repeat 1 31 0 5 1716 444 19 0 0 chr3 148356206 148356259 -11243524 + (GA)n Simple_repeat Simple_repeat 2 54 0 5 1716 604 286 68 73 chr3 148356785 148357004 -11242779 + ID_B1 SINE B4 6 223 -1 5 1716 21 0 0 0 chr3 148357113 148357134 -11242649 + AT_rich Low_complexity Low_complexity 1 21 0 5 1716 190 299 143 45 chr3 148358060 148358193 -11241590 + L3b LINE CR1 74 219 -263 5 1716 342 256 11 67 chr3 148358627 148358807 -11240976 - L1M4 LINE L1 -737 5441 5272 5 1716 180 368 161 8 chr3 148358917 148359035 -11240748 - MIR3 SINE MIR -23 185 50 5 1716 325 350 239 19 chr3 148359298 148359731 -11240052 - Kanga1a DNA Tc2 -137 617 90 5 1716 439 73 0 56 chr3 148359826 148359898 -11239885 - L1_Mus3 LINE L1 -5 6633 6566 5 1716 250 277 95 11 chr3 148359982 148360077 -11239706 + MIR SINE MIR 62 164 -98 5 1716 354 45 0 0 chr3 148360514 148360558 -11239225 + (CA)n Simple_repeat Simple_repeat 2 45 0 5 1716 759 100 0 0 chr3 148360586 148360696 -11239087 + (GGAA)n Simple_repeat Simple_repeat 4 113 0 5 1716 580 276 50 66 chr3 148360756 148360954 -11238829 - B3A SINE B2 -3 195 1 5 1716 253 260 81 93 chr3 148361066 148361227 -11238556 + RSINE1 SINE B4 3 161 -4 5 1716 737 76 0 9 chr3 148361902 148362008 -11237775 + (GGA)n Simple_repeat Simple_repeat 2 106 0 5 1716 480 235 39 0 chr3 148364456 148364553 -11235230 - RSINE1 SINE B4 -35 130 30 5 1716 608 235 117 29 chr3 148364553 148364759 -11235024 - MTD LTR MaLR 0 419 196 5 1716 3896 226 159 24 chr3 148364769 148365789 -11233994 - Lx6 LINE L1 -1 7459 6302 5 1716 598 264 34 22 chr3 148365789 148365967 -11233816 - MTD LTR MaLR -227 192 13 5 1716 39023 37 0 4 chr3 148367217 148373431 -11226352 - L1Md_T LINE L1 -12 6573 284 5 214 4684 16 2 0 chr3 148373489 148373981 -11225802 - MT2_Mm LTR ERVL 0 493 1 5 1717 322 0 0 0 chr3 148373981 148374019 -11225764 - MERVL-int LTR ERVL 0 5485 5448 5 1717 387 167 46 35 chr3 148374019 148374106 -11225677 - ORR1A3-int LTR MaLR -1323 640 553 5 1717 48347 15 6 0 chr3 148374106 148379432 -11220351 - MERVL-int LTR ERVL -125 5360 1 5 1717 4684 16 2 0 chr3 148379432 148379924 -11219859 - MT2_Mm LTR ERVL 0 493 1 5 1717 335 302 83 54 chr3 148380582 148380750 -11219033 - MTE2b LTR MaLR -206 173 1 5 1717 22 56 0 0 chr3 148380778 148380814 -11218969 + AT_rich Low_complexity Low_complexity 1 36 0 5 1717 617 302 50 80 chr3 148380961 148381299 -11218484 + MT2A LTR ERVL 204 531 -2 5 1717 737 182 0 0 chr3 148384225 148384335 -11215448 + PB1D9 SINE Alu 4 113 -7 5 1717 414 0 0 0 chr3 148384335 148384381 -11215402 + (TAGA)n Simple_repeat Simple_repeat 4 49 0 5 1717 388 281 47 0 chr3 148384786 148384914 -11214869 + B1F SINE Alu 16 149 0 5 1717 559 331 151 29 chr3 148384894 148385305 -11214478 - MLT1D LTR MaLR -44 461 1 5 1717 352 281 77 85 chr3 148385456 148385705 -11214078 + MLT1E3 LTR MaLR 385 645 -9 5 1717 290 137 137 0 chr3 148386080 148386146 -11213637 - MLT1D LTR MaLR -3 502 427 5 1717 287 349 104 15 chr3 148386146 148386280 -11213503 + RSINE1 SINE B4 3 148 -17 5 1717 414 85 0 0 chr3 148386287 148386346 -11213437 + (CA)n Simple_repeat Simple_repeat 1 59 0 5 1717 442 378 41 25 chr3 148386373 148386617 -11213166 - MLT1A0 LTR MaLR -58 307 60 5 1717 529 248 6 121 chr3 148386638 148386803 -11212980 + B4 SINE B4 133 278 -14 5 1717 299 259 118 108 chr3 148387029 148387288 -11212495 + L1MC4a LINE L1 7296 7562 -320 5 1717 3128 155 53 87 chr3 148387288 148388002 -11211781 + RMER6C LTR ERVK 1 690 0 5 1717 299 259 118 108 chr3 148388002 148388114 -11211669 + L1MC4a LINE L1 7563 7671 -211 5 1717 1271 264 78 33 chr3 148388186 148388585 -11211198 - MTD LTR MaLR -2 417 1 5 1717 365 292 9 19 chr3 148389177 148389285 -11210498 + B1F SINE Alu 38 144 -5 5 1717 498 204 0 0 chr3 148389285 148389393 -11210390 + GA-rich Low_complexity Low_complexity 1 108 0 5 1717 231 36 0 0 chr3 148389849 148389877 -11209906 + (CA)n Simple_repeat Simple_repeat 1 28 0 5 1717 380 20 20 0 chr3 148390349 148390398 -11209385 + (TC)n Simple_repeat Simple_repeat 1 50 0 5 1717 1511 172 58 14 chr3 148390882 148391177 -11208606 - Lx7 LINE L1 -22 7674 7367 5 1717 27 0 0 0 chr3 148391191 148391218 -11208565 + AT_rich Low_complexity Low_complexity 1 27 0 5 1717 848 294 23 0 chr3 148391265 148391486 -11208297 - Lx7 LINE L1 -353 7343 7118 5 1717 468 0 0 0 chr3 148391904 148391956 -11207827 + (TC)n Simple_repeat Simple_repeat 1 52 0 5 1717 261 0 0 0 chr3 148391956 148391984 -11207799 + (CA)n Simple_repeat Simple_repeat 1 29 0 5 1717 210 312 124 40 chr3 148394895 148395072 -11204711 - L2 LINE L2 -1297 2122 1931 5 1717 486 0 0 0 chr3 148395168 148395222 -11204561 + (TG)n Simple_repeat Simple_repeat 2 55 0 5 1717 518 309 117 26 chr3 148395245 148395511 -11204272 - B4A SINE B4 -1 291 2 5 1717 734 271 43 5 chr3 148395532 148395740 -11204043 - B3 SINE B2 0 216 1 5 1717 21 0 0 0 chr3 148396852 148396873 -11202910 + AT_rich Low_complexity Low_complexity 1 21 0 5 1717 273 57 0 0 chr3 148398112 148398147 -11201636 + (CA)n Simple_repeat Simple_repeat 2 36 0 6 1717 231 241 47 24 chr3 148398214 148398299 -11201484 - MIR3 SINE MIR -2 206 120 6 1717 384 22 0 0 chr3 148399104 148399149 -11200634 + (GA)n Simple_repeat Simple_repeat 2 46 0 6 1717 189 121 0 0 chr3 148399154 148399187 -11200596 + (TG)n Simple_repeat Simple_repeat 2 34 0 6 1717 477 292 58 16 chr3 148399413 148399601 -11200182 - ID_B1 SINE B4 -28 196 1 6 1717 530 212 133 8 chr3 148399702 148399852 -11199931 + MER74A LTR ERVL 40 260 -362 6 1717 237 311 54 22 chr3 148399911 148400003 -11199780 + MER74A LTR ERVL 490 584 -38 6 1717 6099 34 0 4 chr3 148400052 148400769 -11199014 - L1Md_F3 LINE L1 -1 6583 5870 6 1717 788 226 27 0 chr3 148401141 148401327 -11198456 + B3 SINE B2 1 191 -25 6 1717 422 281 17 9 chr3 148401767 148401882 -11197901 - ID_B1 SINE B4 -25 199 84 6 1717 265 309 60 0 chr3 148403987 148404071 -11195712 - B1F SINE Alu -58 91 3 6 1717 757 293 4 13 chr3 148404157 148404382 -11195401 - MER2 DNA MER2_type -9 336 114 6 1717 2178 230 40 81 chr3 148404411 148404979 -11194804 + Lx6 LINE L1 6912 7456 -4 6 1717 583 261 7 14 chr3 148405417 148405557 -11194226 + B1_Mur3 SINE Alu 5 143 -6 6 1717 2964 171 61 2 chr3 148405883 148406421 -11193362 - RMER15 LTR ERVL -3 572 3 6 1717 276 249 113 52 chr3 148407354 148407534 -11192249 - LTR81A LTR ERV1? -1131 219 33 6 1717 22 35 0 0 chr3 148407572 148407601 -11192182 + AT_rich Low_complexity Low_complexity 1 29 0 6 1717 372 59 0 0 chr3 148408413 148408464 -11191319 + (TG)n Simple_repeat Simple_repeat 1 51 0 6 1717 546 297 35 40 chr3 148408522 148408750 -11191033 - B4A SINE B4 -27 265 39 6 1717 1106 251 0 44 chr3 148408967 148409242 -11190541 + Lx6 LINE L1 7195 7457 -3 6 1717 717 286 270 11 chr3 148409252 148409626 -11190157 - MLT1H LTR MaLR -1 548 78 6 1717 220 219 0 0 chr3 148412011 148412052 -11187731 + ID4_ SINE ID 7 47 -36 6 1717 440 78 0 25 chr3 148412061 148412140 -11187643 + (TCTCTG)n Simple_repeat Simple_repeat 2 78 0 6 1717 216 0 0 0 chr3 148412140 148412164 -11187619 + (CA)n Simple_repeat Simple_repeat 1 24 0 6 1717 351 0 0 0 chr3 148412169 148412208 -11187575 + (CAGA)n Simple_repeat Simple_repeat 2 40 0 6 1717 396 253 10 50 chr3 148412330 148412430 -11187353 - PB1D10 SINE Alu -21 96 1 6 1717 3100 5 0 118 chr3 148413060 148413476 -11186307 + IAPLTR1_Mm LTR ERVK 1 367 0 6 1717 56585 24 17 2 chr3 148413476 148419860 -11179923 + IAPEz-int LTR ERVK 8 6481 0 6 1717 3100 5 0 118 chr3 148419860 148420276 -11179507 + IAPLTR1_Mm LTR ERVK 1 367 0 6 1717 1044 134 0 0 chr3 148422058 148422229 -11177554 + (TG)n Simple_repeat Simple_repeat 2 172 0 6 1717 208 200 40 0 chr3 148423778 148423828 -11175955 + CT-rich Low_complexity Low_complexity 1 52 0 6 1717 248 217 58 0 chr3 148423976 148424045 -11175738 - PB1D10 SINE Alu -8 109 37 6 1717 24 0 0 0 chr3 148424088 148424112 -11175671 + AT_rich Low_complexity Low_complexity 1 24 0 6 1717 418 281 9 0 chr3 148424411 148424525 -11175258 + PB1D10 SINE Alu 1 115 -2 6 1717 401 343 114 50 chr3 148425163 148425522 -11174261 + MLT1C LTR MaLR 1 382 -85 6 1717 225 196 0 0 chr3 148426443 148426489 -11173294 + CT-rich Low_complexity Low_complexity 3 48 0 6 1717 1546 244 55 41 chr3 148426556 148426975 -11172808 - Lx6 LINE L1 -40 7420 6996 6 1717 227 250 66 0 chr3 148427502 148427578 -11172205 - ID SINE ID -142 82 2 6 1717 236 363 37 47 chr3 148428678 148428869 -11170914 + MIRb SINE MIR 80 268 0 6 1717 378 0 0 0 chr3 148429168 148429210 -11170573 + (GGA)n Simple_repeat Simple_repeat 2 43 0 6 1717 950 265 132 19 chr3 148430380 148430745 -11169038 - MTC LTR MaLR -15 406 1 6 1717 756 120 0 0 chr3 148431473 148431623 -11168160 + (GA)n Simple_repeat Simple_repeat 1 150 0 6 1717 776 308 99 35 chr3 148432574 148433020 -11166763 - MLT2B1 LTR ERVL 0 555 60 6 1717 306 0 0 0 chr3 148434607 148434641 -11165142 + (CA)n Simple_repeat Simple_repeat 2 35 0 6 1717 26 30 0 0 chr3 148435614 148435647 -11164136 + AT_rich Low_complexity Low_complexity 1 33 0 6 1717 180 77 0 0 chr3 148436073 148436099 -11163684 + (TTCA)n Simple_repeat Simple_repeat 3 28 0 6 1717 593 157 9 0 chr3 148436195 148436310 -11163473 + (TCTA)n Simple_repeat Simple_repeat 4 119 0 6 1717 503 102 11 0 chr3 148436322 148436410 -11163373 + (TG)n Simple_repeat Simple_repeat 2 90 0 6 1717 737 227 7 0 chr3 148436415 148436565 -11163218 - B4 SINE B4 -30 262 112 6 1717 244 305 50 50 chr3 148436747 148436847 -11162936 - B4A SINE B4 -190 102 3 6 1717 732 91 0 0 chr3 148438467 148438577 -11161206 + (TC)n Simple_repeat Simple_repeat 1 110 0 6 1717 243 0 0 0 chr3 148438577 148438603 -11161180 + (CA)n Simple_repeat Simple_repeat 1 27 0 6 1717 252 260 52 32 chr3 148441718 148441873 -11157910 + (TAGA)n Simple_repeat Simple_repeat 3 160 0 6 1717 204 125 0 0 chr3 148441873 148441905 -11157878 + (TGG)n Simple_repeat Simple_repeat 1 32 0 6 1717 275 96 19 0 chr3 148441906 148441958 -11157825 + (TAGA)n Simple_repeat Simple_repeat 2 54 0 6 1717 946 74 22 28 chr3 148441990 148442170 -11157613 + (TAGA)n Simple_repeat Simple_repeat 2 180 0 6 1717 8018 45 18 2 chr3 148443360 148444329 -11155454 + L1Md_F2 LINE L1 5587 6570 -12 6 1717 688 275 19 10 chr3 148444353 148444562 -11155221 - B3 SINE B2 -4 212 2 6 1717 254 259 17 0 chr3 148444576 148444634 -11155149 - ID_B1 SINE B4 -81 143 85 6 1717 699 225 55 110 chr3 148444709 148444970 -11154813 + B4 SINE B4 1 245 -47 6 1717 3083 75 10 2 chr3 148444970 148445374 -11154409 - MTB_Mm LTR MaLR 0 407 1 6 1717 699 225 55 110 chr3 148445374 148445421 -11154362 + B4 SINE B4 246 292 0 6 1717 254 106 21 0 chr3 148445421 148445468 -11154315 + (CA)n Simple_repeat Simple_repeat 1 48 0 6 1717 280 222 0 40 chr3 148445625 148445700 -11154083 - MLT1B LTR MaLR -17 373 302 6 1717 344 258 144 0 chr3 148445768 148445865 -11153918 - PB1D10 SINE Alu -1 116 6 6 1717 352 329 55 81 chr3 148445940 148446317 -11153466 + ORR1E LTR MaLR 1 379 0 6 1717 1510 216 0 132 chr3 148446713 148447139 -11152644 - ORR1D1 LTR MaLR -4 370 1 6 1717 276 100 0 0 chr3 148448197 148448237 -11151546 + (T)n Simple_repeat Simple_repeat 1 40 0 6 1717 404 241 70 18 chr3 148448335 148448449 -11151334 - RSINE1 SINE B4 -38 127 8 6 1717 419 239 17 17 chr3 148449367 148449486 -11150297 - ID_B1 SINE B4 -2 222 104 6 1717 305 264 0 0 chr3 148450013 148450085 -11149698 - ID4_ SINE ID -4 79 8 6 1717 226 342 165 21 chr3 148451246 148451285 -11148498 - MER47B DNA MER2_type -174 244 206 6 1717 184 30 0 57 chr3 148451285 148451320 -11148463 + (TTTG)n Simple_repeat Simple_repeat 4 36 0 6 1717 226 342 165 21 chr3 148451320 148451474 -11148309 - MER47B DNA MER2_type -213 205 23 6 1717 277 273 26 0 chr3 148451856 148451933 -11147850 + GA-rich Low_complexity Low_complexity 2 80 0 6 1717 1078 71 0 29 chr3 148452140 148452315 -11147468 + (GGAGA)n Simple_repeat Simple_repeat 2 171 0 6 1717 844 181 7 0 chr3 148452323 148452461 -11147322 + B1_Mur1 SINE Alu 4 142 -7 6 1717 21 0 0 0 chr3 148452486 148452507 -11147276 + AT_rich Low_complexity Low_complexity 1 21 0 6 1717 567 207 6 17 chr3 148453420 148453597 -11146186 + (CATA)n Simple_repeat Simple_repeat 2 176 0 6 1717 1589 210 21 64 chr3 148453604 148453981 -11145802 + ORR1B2 LTR MaLR 1 361 -6 6 1717 1152 62 0 7 chr3 148453982 148454128 -11145655 + B1_Mus2 SINE Alu 1 145 -2 6 1717 1173 48 14 0 chr3 148454698 148454843 -11144940 + B1_Mus1 SINE Alu 2 148 0 6 1717 380 302 7 41 chr3 148454880 148455025 -11144758 + ID_B1 SINE B4 81 220 -4 6 1717 1094 239 108 30 chr3 148455509 148455879 -11143904 - MTD LTR MaLR -15 404 6 6 1717 426 296 31 19 chr3 148457283 148457445 -11142338 - RSINE1 SINE B4 0 165 2 6 1717 290 343 10 0 chr3 148457878 148457977 -11141806 + (TG)n Simple_repeat Simple_repeat 1 100 0 6 1717 531 101 0 0 chr3 148458312 148458391 -11141392 + (TG)n Simple_repeat Simple_repeat 2 80 0 6 1717 30 27 0 0 chr3 148459722 148459759 -11140024 + AT_rich Low_complexity Low_complexity 1 37 0 6 1717 239 309 30 20 chr3 148460429 148460528 -11139255 + RMER15 LTR ERVL 377 476 -99 6 1717 288 288 0 0 chr3 148461113 148461186 -11138597 + ID4 SINE ID 11 83 0 6 1717 273 188 0 0 chr3 148461194 148461279 -11138504 + GA-rich Low_complexity Low_complexity 3 87 0 6 1717 867 142 0 0 chr3 148461294 148461652 -11138131 + (GGA)n Simple_repeat Simple_repeat 1 358 0 6 1717 219 237 0 26 chr3 148461653 148461684 -11138099 + polypurine Low_complexity Low_complexity 3 33 0 6 1717 1017 108 0 0 chr3 148461684 148462047 -11137736 + (GGA)n Simple_repeat Simple_repeat 1 363 0 6 1717 219 237 0 26 chr3 148462047 148462089 -11137694 + polypurine Low_complexity Low_complexity 34 75 0 6 1717 1035 97 0 0 chr3 148462091 148462267 -11137516 + (GGA)n Simple_repeat Simple_repeat 3 178 0 6 1717 239 230 11 0 chr3 148462268 148462355 -11137428 + GA-rich Low_complexity Low_complexity 3 90 0 6 1717 325 137 0 0 chr3 148462520 148462571 -11137212 + HAL1-3A_ME LINE L1 1968 2018 -840 6 1717 381 253 11 6 chr3 148462571 148462750 -11137033 + (CA)n Simple_repeat Simple_repeat 1 180 0 6 1717 241 331 32 32 chr3 148463995 148464120 -11135663 + MLT2B4 LTR ERVL 72 196 -360 6 1717 753 158 0 0 chr3 148464240 148464398 -11135385 + (CA)n Simple_repeat Simple_repeat 2 159 0 6 1717 324 0 0 0 chr3 148465319 148465355 -11134428 + (CTGGGG)n Simple_repeat Simple_repeat 4 39 0 6 1717 423 287 15 37 chr3 148465355 148465482 -11134301 + ID_B1 SINE B4 21 144 -80 6 1717 349 190 0 0 chr3 148466260 148466318 -11133465 + polypurine Low_complexity Low_complexity 3 60 0 6 1717 784 127 0 44 chr3 148466318 148466500 -11133283 + GA-rich Low_complexity Low_complexity 2 175 0 6 1717 800 77 8 0 chr3 148466548 148466678 -11133105 + (TAGA)n Simple_repeat Simple_repeat 1 131 0 6 1717 957 256 87 69 chr3 148466686 148467064 -11132719 + MTD LTR MaLR 20 404 -15 6 1717 230 177 191 16 chr3 148468621 148468684 -11131099 + MTEb LTR MaLR 20 93 -286 7 1717 242 314 11 65 chr3 148469479 148469571 -11130212 + PB1D10 SINE Alu 30 116 -1 7 1717 293 177 138 81 chr3 148470310 148470433 -11129350 - MIRb SINE MIR -33 229 100 7 1717 1347 58 0 0 chr3 148471422 148471595 -11128188 + (TTTC)n Simple_repeat Simple_repeat 4 176 0 7 1717 282 259 94 0 chr3 148471604 148471689 -11128094 - B1F SINE Alu -56 93 1 7 1717 1153 62 7 0 chr3 148471852 148471997 -11127786 + B1_Mus1 SINE Alu 1 146 -2 7 1717 246 95 0 0 chr3 148472000 148472042 -11127741 + (CCAA)n Simple_repeat Simple_repeat 2 43 0 7 1717 21 0 0 0 chr3 148472817 148472838 -11126945 + AT_rich Low_complexity Low_complexity 1 21 0 7 1717 1222 49 0 0 chr3 148473019 148473163 -11126620 - B1_Mus2 SINE Alu -1 146 3 7 1717 505 126 17 8 chr3 148473264 148473384 -11126399 + T-rich Low_complexity Low_complexity 2 122 0 7 1717 615 62 0 0 chr3 148473641 148473721 -11126062 + (TC)n Simple_repeat Simple_repeat 2 81 0 7 1717 468 0 0 0 chr3 148474071 148474123 -11125660 + (TTTA)n Simple_repeat Simple_repeat 4 55 0 7 1717 1242 141 115 4 chr3 148474124 148474359 -11125424 - Lx3C LINE L1 0 6976 6716 7 1717 1494 168 44 54 chr3 148474359 148474767 -11125016 + RMER17C LTR ERVK 1 404 -6 7 1717 2271 68 58 0 chr3 148474768 148475077 -11124706 - Lx3C LINE L1 -278 6698 6372 7 1717 432 0 0 0 chr3 148475357 148475405 -11124378 + (TG)n Simple_repeat Simple_repeat 1 48 0 7 1717 26 30 0 0 chr3 148476296 148476329 -11123454 + AT_rich Low_complexity Low_complexity 1 33 0 7 1717 224 30 30 0 chr3 148476579 148476612 -11123171 + (TG)n Simple_repeat Simple_repeat 1 34 0 7 1717 424 268 224 17 chr3 148477010 148477242 -11122541 + B4A SINE B4 1 280 -12 7 1717 893 212 61 25 chr3 148478006 148478204 -11121579 + B3 SINE B2 9 213 -3 7 1717 33 0 0 0 chr3 148479029 148479062 -11120721 + AT_rich Low_complexity Low_complexity 1 33 0 7 1717 21 36 0 0 chr3 148479398 148479426 -11120357 + AT_rich Low_complexity Low_complexity 1 28 0 7 1717 29 0 0 0 chr3 148482069 148482098 -11117685 + AT_rich Low_complexity Low_complexity 1 29 0 7 1717 200 132 26 0 chr3 148482367 148482405 -11117378 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 7 1717 452 256 75 0 chr3 148486211 148486344 -11113439 - ID_B1 SINE B4 -2 222 80 7 1717 360 0 0 0 chr3 148489009 148489049 -11110734 + (TG)n Simple_repeat Simple_repeat 2 41 0 7 1717 21 0 0 0 chr3 148490275 148490296 -11109487 + AT_rich Low_complexity Low_complexity 1 21 0 7 1717 25 0 0 0 chr3 148490439 148490464 -11109319 + AT_rich Low_complexity Low_complexity 1 25 0 7 1717 297 0 0 0 chr3 148492944 148492977 -11106806 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 7 1717 310 175 232 24 chr3 148492977 148493059 -11106724 - PB1D9 SINE Alu -10 110 12 7 1717 280 323 14 36 chr3 148496441 148496579 -11103204 - B4A SINE B4 -141 151 17 7 1717 180 0 0 0 chr3 148497671 148497691 -11102092 + (T)n Simple_repeat Simple_repeat 1 20 0 7 1717 787 39 0 0 chr3 148497750 148497853 -11101930 + B1_Mus2 SINE Alu 45 147 0 7 1717 209 100 50 0 chr3 148501407 148501447 -11098336 + (CATG)n Simple_repeat Simple_repeat 3 44 0 1 1717 360 0 0 0 chr3 148501462 148501502 -11098281 + (TG)n Simple_repeat Simple_repeat 2 41 0 2 1718 502 168 52 70 chr3 148508404 148508519 -11091264 - PB1D9 SINE Alu -7 113 1 3 1718 342 273 0 13 chr3 148509168 148509246 -11090537 - ID SINE ID -144 80 4 4 1718 510 246 8 25 chr3 148509248 148509369 -11090414 - PB1D7 SINE Alu -1 119 1 5 1718 24 0 0 0 chr3 148512507 148512531 -11087252 + AT_rich Low_complexity Low_complexity 1 24 0 6 1718 396 0 0 0 chr3 148514179 148514223 -11085560 + (CA)n Simple_repeat Simple_repeat 2 45 0 7 1718 210 154 0 0 chr3 148515359 148515398 -11084385 + A-rich Low_complexity Low_complexity 2 40 0 8 1718 213 121 0 0 chr3 148515973 148516006 -11083777 + (GAA)n Simple_repeat Simple_repeat 1 33 0 9 1718 699 240 90 5 chr3 148516106 148516307 -11083476 - URR1A DNA MER1_type -4 222 5 1 1718 231 371 48 0 chr3 148518080 148518185 -11081598 - MIR SINE MIR -75 187 78 1 1718 235 246 0 0 chr3 148523421 148523478 -11076305 + A-rich Low_complexity Low_complexity 1 57 0 1 1718 216 0 0 0 chr3 148523970 148523994 -11075789 + (A)n Simple_repeat Simple_repeat 1 24 0 1 1718 32 0 0 0 chr3 148524835 148524867 -11074916 + AT_rich Low_complexity Low_complexity 1 32 0 1 1718 306 0 0 0 chr3 148527419 148527453 -11072330 + (CA)n Simple_repeat Simple_repeat 1 34 0 1 1718 364 259 91 41 chr3 148527567 148527688 -11072095 - PB1 SINE Alu 0 127 1 1 1718 189 0 0 0 chr3 148527693 148527714 -11072069 + (TCTG)n Simple_repeat Simple_repeat 2 22 0 1 1718 27 0 0 0 chr3 148529899 148529926 -11069857 + AT_rich Low_complexity Low_complexity 1 27 0 1 1718 337 260 19 39 chr3 148530789 148530893 -11068890 + B3A SINE B2 1 102 -96 1 1718 221 247 0 23 chr3 148531028 148531115 -11068668 + GA-rich Low_complexity Low_complexity 2 86 0 2 1718 22 35 0 0 chr3 148531585 148531614 -11068169 + AT_rich Low_complexity Low_complexity 1 29 0 2 1718 306 73 0 0 chr3 148531703 148531744 -11068039 + (CA)n Simple_repeat Simple_repeat 2 42 0 2 1718 447 52 0 0 chr3 148531760 148531818 -11067965 + (TAGA)n Simple_repeat Simple_repeat 4 61 0 2 1718 229 330 34 0 chr3 148532449 148532537 -11067246 + MER5A DNA MER1_type 1 91 -98 2 1718 333 62 0 0 chr3 148533014 148533062 -11066721 + (TAGA)n Simple_repeat Simple_repeat 1 48 0 2 1718 267 282 28 0 chr3 148534313 148534384 -11065399 + PB1D10 SINE Alu 13 85 -32 2 1718 182 364 100 0 chr3 148534635 148534745 -11065038 + MIRb SINE MIR 110 230 -38 2 1718 546 67 0 0 chr3 148537041 148537116 -11062667 + (TCTA)n Simple_repeat Simple_repeat 2 76 0 2 1718 290 108 26 26 chr3 148537763 148537839 -11061944 + (TA)n Simple_repeat Simple_repeat 1 76 0 2 1718 540 0 0 0 chr3 148538806 148538866 -11060917 + (TA)n Simple_repeat Simple_repeat 2 61 0 3 1718 279 0 0 0 chr3 148539711 148539742 -11060041 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 3 1718 539 266 48 0 chr3 148540073 148540197 -11059586 - B3 SINE B2 -86 130 1 3 1718 200 122 24 0 chr3 148540988 148541029 -11058754 + (CAGA)n Simple_repeat Simple_repeat 3 44 0 3 1718 402 21 0 0 chr3 148541204 148541251 -11058532 + (CA)n Simple_repeat Simple_repeat 1 47 0 3 1718 738 62 0 0 chr3 148542082 148542178 -11057605 + (GGGA)n Simple_repeat Simple_repeat 4 99 0 3 1718 1050 101 72 0 chr3 148542673 148542811 -11056972 - B1_Mus1 SINE Alu 0 148 1 3 1718 189 0 0 0 chr3 148544539 148544560 -11055223 + (CCCCCG)n Simple_repeat Simple_repeat 3 23 0 3 1718 322 333 30 0 chr3 148544676 148544808 -11054975 - Arthur1 DNA Tip100 -3630 317 182 3 1718 266 217 39 98 chr3 148545611 148545713 -11054070 + MT2B LTR ERVL 163 258 -343 3 1718 581 179 24 8 chr3 148545631 148545755 -11054028 + B1_Mur2 SINE Alu 22 147 -2 4 1718 513 0 0 0 chr3 148545914 148545971 -11053812 + (CACG)n Simple_repeat Simple_repeat 1 57 0 4 1718 192 255 107 18 chr3 148546425 148546481 -11053302 - L2 LINE L2 -987 2432 2372 4 1718 2371 158 129 2 chr3 148546512 148546968 -11052815 - L1_Mm LINE L1 -409 5474 4961 4 1718 729 169 72 56 chr3 148546946 148547141 -11052642 + Lx2 LINE L1 6800 6997 0 4 1718 274 307 95 38 chr3 148548018 148548123 -11051660 + PB1 SINE Alu 17 127 0 4 1718 351 326 144 28 chr3 148551335 148551515 -11048268 + Tigger5 DNA MER2_type 3 203 -2203 4 1718 258 251 99 43 chr3 148552496 148552651 -11047132 + L1MC LINE L1 5407 5580 -764 4 1718 309 277 9 90 chr3 148552711 148552822 -11046961 - PB1D10 SINE Alu -11 106 5 4 1718 307 263 4 26 chr3 148552830 148552933 -11046850 + L1MD LINE L1 5586 5686 -2309 4 1718 261 0 0 0 chr3 148552933 148552962 -11046821 + (CA)n Simple_repeat Simple_repeat 2 30 0 5 1718 239 288 42 73 chr3 148552962 148553023 -11046760 + L1MD LINE L1 5687 5745 -2250 4 1718 330 87 0 0 chr3 148554368 148554414 -11045369 + (TG)n Simple_repeat Simple_repeat 1 46 0 5 1718 369 227 45 98 chr3 148554440 148554572 -11045211 - RSINE1 SINE B4 -21 144 20 5 1718 305 331 32 38 chr3 148554825 148554837 -11044946 - ID_B1 SINE B4 0 224 175 5 1718 636 203 16 0 chr3 148554837 148554960 -11044823 - B1_Mur1 SINE Alu -12 137 13 5 1718 305 331 32 38 chr3 148554960 148554982 -11044801 - ID_B1 SINE B4 0 174 69 5 1718 22 56 0 0 chr3 148555725 148555761 -11044022 + AT_rich Low_complexity Low_complexity 1 36 0 5 1718 190 227 13 13 chr3 148556412 148556488 -11043295 + (TG)n Simple_repeat Simple_repeat 1 76 0 5 1718 221 301 0 37 chr3 148556491 148556598 -11043185 + (TATATG)n Simple_repeat Simple_repeat 3 105 0 5 1718 230 288 15 0 chr3 148556507 148556573 -11043210 + (TG)n Simple_repeat Simple_repeat 1 67 0 5 1718 276 255 12 6 chr3 148556598 148556760 -11043023 + (TG)n Simple_repeat Simple_repeat 2 164 0 5 1718 801 282 25 11 chr3 148557684 148557964 -11041819 - L1M4b LINE L1 -5720 1614 1331 5 1718 463 262 105 20 chr3 148560249 148560401 -11039382 + RSINE1 SINE B4 1 165 0 6 1718 206 222 0 0 chr3 148560401 148560437 -11039346 + (CACG)n Simple_repeat Simple_repeat 1 36 0 6 1718 231 220 0 20 chr3 148560813 148560864 -11038919 - B4 SINE B4 -5 287 238 6 1718 22 0 0 0 chr3 148561116 148561138 -11038645 + AT_rich Low_complexity Low_complexity 1 22 0 6 1718 288 53 0 0 chr3 148561507 148561545 -11038238 + (TTTTG)n Simple_repeat Simple_repeat 5 42 0 6 1718 742 276 33 23 chr3 148561677 148561892 -11037891 + ID_B1 SINE B4 5 221 -3 6 1718 527 239 57 8 chr3 148563263 148563421 -11036362 - ID_B1 SINE B4 -56 236 70 6 1718 186 43 0 0 chr3 148563983 148564006 -11035777 + (CAAAA)n Simple_repeat Simple_repeat 1 23 0 6 1718 594 60 0 0 chr3 148564503 148564586 -11035197 + (GA)n Simple_repeat Simple_repeat 1 83 0 6 1718 1430 242 47 27 chr3 148564921 148565329 -11034454 + Lx6 LINE L1 7045 7460 0 6 1718 469 259 36 0 chr3 148565743 148565855 -11033928 + B1F1 SINE Alu 26 141 -8 6 1718 22 70 0 0 chr3 148565881 148565924 -11033859 + AT_rich Low_complexity Low_complexity 1 43 0 7 1718 435 220 220 0 chr3 148566964 148567064 -11032719 - B1_Mur1 SINE Alu -19 130 9 7 1718 313 345 17 0 chr3 148567738 148567854 -11031929 + ID_B1 SINE B4 105 222 -2 7 1718 725 95 0 8 chr3 148567920 148568037 -11031746 + (CATATA)n Simple_repeat Simple_repeat 4 119 0 7 1718 478 287 43 85 chr3 148568069 148568233 -11031550 + B3A SINE B2 34 190 -8 7 1718 201 74 0 0 chr3 148568316 148568343 -11031440 + (T)n Simple_repeat Simple_repeat 1 27 0 7 1718 224 298 82 71 chr3 148569587 148569757 -11030026 + MIR SINE MIR 44 215 -47 7 1718 233 146 21 0 chr3 148570362 148570410 -11029373 + (TTTA)n Simple_repeat Simple_repeat 4 52 0 7 1718 406 220 48 48 chr3 148570662 148570767 -11029016 + B3A SINE B2 1 105 -93 7 1718 439 307 7 0 chr3 148571534 148571671 -11028112 + ID_B1 SINE B4 86 223 -1 7 1718 211 28 56 0 chr3 148571678 148571714 -11028069 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 8 1718 300 223 133 69 chr3 148572179 148572288 -11027495 - PB1D10 SINE Alu -11 138 38 8 1718 262 79 0 0 chr3 148572549 148572582 -11027201 + B3 SINE B2 2 34 -182 8 1718 3108 19 5 0 chr3 148572582 148572953 -11026830 - MTA_Mm LTR MaLR 0 396 24 8 1718 991 110 12 41 chr3 148572929 148573081 -11026702 + B2_Mm1t SINE B2 9 160 -33 8 1718 206 0 0 128 chr3 148573081 148573120 -11026663 + (TAAA)n Simple_repeat Simple_repeat 3 36 0 8 1718 991 110 12 41 chr3 148573120 148573138 -11026645 + B2_Mm1t SINE B2 161 173 -20 8 1718 210 234 0 0 chr3 148573258 148573305 -11026478 + B4 SINE B4 15 61 -231 8 1718 236 377 53 80 chr3 148574076 148574226 -11025557 + RSINE1 SINE B4 2 147 -18 8 1718 1473 155 57 11 chr3 148574222 148574502 -11025281 + ORR1B1 LTR MaLR 102 394 0 8 1718 28 0 0 0 chr3 148575559 148575587 -11024196 + AT_rich Low_complexity Low_complexity 1 28 0 8 1718 305 109 18 0 chr3 148577420 148577475 -11022308 + (TCTA)n Simple_repeat Simple_repeat 4 59 0 9 1718 447 328 23 15 chr3 148577475 148577608 -11022175 - B1F1 SINE Alu -14 135 2 9 1718 267 54 0 0 chr3 148577971 148578008 -11021775 + (TCTG)n Simple_repeat Simple_repeat 2 38 0 9 1718 315 71 0 0 chr3 148578011 148578053 -11021730 + (TG)n Simple_repeat Simple_repeat 1 42 0 9 1718 224 163 0 20 chr3 148579607 148579657 -11020126 + (CAAA)n Simple_repeat Simple_repeat 4 52 0 9 1718 270 0 0 0 chr3 148580624 148580654 -11019129 + (A)n Simple_repeat Simple_repeat 1 30 0 9 1718 1059 199 37 0 chr3 148581480 148581696 -11018087 - URR1B DNA MER1_type 0 225 2 9 1718 359 309 45 153 chr3 148581722 148581944 -11017839 + MTE2b LTR MaLR 152 349 -30 9 1718 189 74 0 0 chr3 148581945 148581972 -11017811 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 9 1718 302 0 26 0 chr3 148583655 148583693 -11016090 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 9 1718 513 271 81 6 chr3 148587459 148587619 -11012164 + B3 SINE B2 28 199 -17 1 1718 465 268 18 84 chr3 148587665 148587832 -11011951 + B3 SINE B2 1 156 -60 1 1718 466 108 0 24 chr3 148588002 148588087 -11011696 + (GAAA)n Simple_repeat Simple_repeat 2 84 0 1 1718 777 52 17 9 chr3 148588786 148588902 -11010881 + (GGA)n Simple_repeat Simple_repeat 1 117 0 1 1718 414 0 0 0 chr3 148590060 148590106 -11009677 + (TC)n Simple_repeat Simple_repeat 1 46 0 1 1718 317 85 152 0 chr3 148590470 148590529 -11009254 + L1_Mus2 LINE L1 6497 6564 -2 1 1718 222 322 0 17 chr3 148590980 148591040 -11008743 - B4A SINE B4 -149 143 85 1 1718 687 182 164 6 chr3 148591558 148591735 -11008048 + URR1A DNA MER1_type 8 212 -14 1 1718 222 37 0 0 chr3 148592295 148592322 -11007461 + (GGGA)n Simple_repeat Simple_repeat 4 30 0 1 1718 525 44 0 0 chr3 148592322 148592390 -11007393 + (TAGA)n Simple_repeat Simple_repeat 2 69 0 1 1718 21 36 0 0 chr3 148593041 148593069 -11006714 + AT_rich Low_complexity Low_complexity 1 28 0 1 1718 234 0 0 0 chr3 148593793 148593819 -11005964 + (T)n Simple_repeat Simple_repeat 1 26 0 1 1718 245 260 0 0 chr3 148594323 148594373 -11005410 + (TGGA)n Simple_repeat Simple_repeat 3 52 0 1 1718 22 56 0 0 chr3 148595952 148595988 -11003795 + AT_rich Low_complexity Low_complexity 1 36 0 1 1718 521 159 70 70 chr3 148596925 148597040 -11002743 + PB1D9 SINE Alu 3 117 -3 1 1718 423 0 0 0 chr3 148597052 148597099 -11002684 + (CA)n Simple_repeat Simple_repeat 1 47 0 1 1718 215 98 73 0 chr3 148597102 148597143 -11002640 + GA-rich Low_complexity Low_complexity 3 46 0 1 1718 332 260 120 27 chr3 148598462 148598612 -11001171 + RSINE1 SINE B4 2 165 0 1 1718 490 135 0 19 chr3 148598628 148598734 -11001049 + (TAGA)n Simple_repeat Simple_repeat 3 106 0 1 1718 207 389 14 0 chr3 148598862 148599001 -11000782 + MIRb SINE MIR 123 263 -5 1 1718 389 264 19 19 chr3 148599273 148599381 -11000402 - ID_B1 SINE B4 -3 221 114 1 1718 238 219 16 0 chr3 148600402 148600466 -10999317 + (TATG)n Simple_repeat Simple_repeat 4 68 0 1 1718 492 48 0 0 chr3 148600482 148600545 -10999238 + (TG)n Simple_repeat Simple_repeat 1 63 0 1 1718 323 225 269 42 chr3 148600796 148600963 -10998820 + B3 SINE B2 3 207 -9 1 1718 367 257 123 9 chr3 148600994 148601100 -10998683 + RSINE1 SINE B4 3 120 -45 1 1718 180 135 0 0 chr3 148601115 148601152 -10998631 + (TC)n Simple_repeat Simple_repeat 1 37 0 1 1718 396 0 0 0 chr3 148601152 148601196 -10998587 + (TG)n Simple_repeat Simple_repeat 1 44 0 1 1718 603 60 0 0 chr3 148601204 148601288 -10998495 + (TC)n Simple_repeat Simple_repeat 2 85 0 1 1718 380 97 16 0 chr3 148601290 148601352 -10998431 + (CA)n Simple_repeat Simple_repeat 1 63 0 1 1718 203 204 20 0 chr3 148603254 148603303 -10996480 + CT-rich Low_complexity Low_complexity 5 54 0 1 1718 208 67 0 82 chr3 148603356 148603405 -10996378 + (TTTTTG)n Simple_repeat Simple_repeat 4 48 0 1 1718 234 62 0 0 chr3 148604271 148604303 -10995480 + (TG)n Simple_repeat Simple_repeat 2 33 0 1 1718 21 0 0 0 chr3 148605349 148605370 -10994413 + AT_rich Low_complexity Low_complexity 1 21 0 1 1718 413 303 27 9 chr3 148605423 148605533 -10994250 - PB1D10 SINE Alu 0 117 6 1 1718 186 43 0 0 chr3 148605535 148605558 -10994225 + (A)n Simple_repeat Simple_repeat 1 23 0 1 1718 313 260 90 63 chr3 148607193 148607304 -10992479 - ID_B1 SINE B4 -12 212 99 1 1718 36 0 0 0 chr3 148609483 148609519 -10990264 + AT_rich Low_complexity Low_complexity 1 36 0 1 1718 268 284 0 63 chr3 148609815 148609894 -10989889 + ID4 SINE ID 2 75 -8 1 1718 210 143 0 0 chr3 148611871 148611906 -10987877 + (A)n Simple_repeat Simple_repeat 1 35 0 1 1718 300 276 0 117 chr3 148612122 148612233 -10987550 + MT2B LTR ERVL 160 257 -344 1 1718 725 158 0 8 chr3 148612147 148612268 -10987515 + B1_Mm SINE Alu 18 137 -10 1 1718 186 43 0 0 chr3 148612268 148612291 -10987492 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 1718 230 116 0 23 chr3 148613150 148613194 -10986589 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 1 1718 216 0 0 0 chr3 148613226 148613250 -10986533 + (TAAAAA)n Simple_repeat Simple_repeat 2 25 0 1 1718 180 0 0 0 chr3 148614488 148614508 -10985275 + (CA)n Simple_repeat Simple_repeat 2 21 0 1 1718 306 288 149 61 chr3 148615308 148615489 -10984294 + B4 SINE B4 6 202 -90 1 1718 288 0 0 0 chr3 148615586 148615618 -10984165 + (CA)n Simple_repeat Simple_repeat 1 32 0 1 1718 215 238 79 0 chr3 148618762 148618825 -10980958 - ID4 SINE ID -15 68 1 1 1718 216 297 16 0 chr3 148620758 148620822 -10978961 + PB1 SINE Alu 1 65 -62 1 1718 327 130 0 0 chr3 148620843 148620897 -10978886 + (TAGG)n Simple_repeat Simple_repeat 2 55 0 1 1718 329 292 108 0 chr3 148623143 148623263 -10976520 - ID_B1 SINE B4 -7 217 85 1 1718 238 371 11 0 chr3 148624668 148624757 -10975026 + B1F SINE Alu 1 90 -59 1 1718 272 301 43 0 chr3 148626713 148626806 -10972977 - MER58B DNA MER1_type 0 341 245 1 1718 276 30 0 0 chr3 148627915 148627948 -10971835 + (CA)n Simple_repeat Simple_repeat 1 33 0 1 1718 180 0 0 0 chr3 148628472 148628492 -10971291 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 1 1718 387 282 7 78 chr3 148629001 148629155 -10970628 + ID_B1 SINE B4 82 224 0 1 1718 402 134 0 0 chr3 148630449 148630516 -10969267 + (CA)n Simple_repeat Simple_repeat 2 68 0 1 1718 217 238 36 0 chr3 148632397 148632481 -10967302 + GA-rich Low_complexity Low_complexity 1 87 0 1 1718 225 211 17 34 chr3 148632993 148633052 -10966731 + ID2 SINE ID 3 60 -23 1 1718 366 206 155 11 chr3 148633223 148633335 -10966448 - PB1D7 SINE Alu -19 130 7 1 1718 34 42 0 0 chr3 148633404 148633452 -10966331 + AT_rich Low_complexity Low_complexity 1 48 0 1 1718 292 247 12 61 chr3 148633929 148634011 -10965772 + ID4_ SINE ID 1 78 -5 1 1719 304 123 158 0 chr3 148635838 148635895 -10963888 - tRNA-Ala-GCY_ tRNA tRNA -8 67 2 1 1719 238 211 143 31 chr3 148637050 148637148 -10962635 - B3 SINE B2 -3 213 105 1 1719 363 195 0 25 chr3 148637653 148637732 -10962051 - PB1D7 SINE Alu -1 119 43 1 1719 230 311 14 0 chr3 148637909 148637983 -10961800 + RSINE1 SINE B4 3 77 -88 1 1719 209 189 0 0 chr3 148642108 148642145 -10957638 + A-rich Low_complexity Low_complexity 5 41 0 1 1719 411 260 0 0 chr3 148642543 148642639 -10957144 - PB1D7 SINE Alu -1 119 24 1 1719 35 0 0 0 chr3 148642676 148642711 -10957072 + AT_rich Low_complexity Low_complexity 1 35 0 1 1719 717 12 0 0 chr3 148645152 148645234 -10954549 + (GA)n Simple_repeat Simple_repeat 1 82 0 1 1719 459 0 0 0 chr3 148646030 148646081 -10953702 + (TG)n Simple_repeat Simple_repeat 2 52 0 1 1719 230 292 15 0 chr3 148650285 148650350 -10949433 + GA-rich Low_complexity Low_complexity 4 69 0 1 1719 22 80 0 0 chr3 148651667 148651717 -10948066 + GC_rich Low_complexity Low_complexity 1 50 0 1 1719 306 214 0 0 chr3 148652346 148652430 -10947353 + (TG)n Simple_repeat Simple_repeat 1 84 0 1 1719 200 229 13 79 chr3 148653944 148654020 -10945763 + (TAAA)n Simple_repeat Simple_repeat 2 72 0 1 1719 441 0 0 0 chr3 148655208 148655257 -10944526 + (CA)n Simple_repeat Simple_repeat 1 49 0 1 1719 195 42 0 0 chr3 148655435 148655459 -10944324 + (CA)n Simple_repeat Simple_repeat 2 25 0 1 1719 629 159 155 23 chr3 148656557 148656686 -10943097 + B1_Mur2 SINE Alu 4 149 0 1 1719 22 35 0 0 chr3 148657115 148657144 -10942639 + AT_rich Low_complexity Low_complexity 1 29 0 1 1719 25 31 0 0 chr3 148657994 148658026 -10941757 + AT_rich Low_complexity Low_complexity 1 32 0 1 1719 440 305 91 10 chr3 148658165 148658364 -10941419 - ID_B1 SINE B4 -8 216 2 1 1719 483 202 0 0 chr3 148659573 148659677 -10940106 + (TA)n Simple_repeat Simple_repeat 1 104 0 1 1719 21 36 0 0 chr3 148660893 148660921 -10938862 + AT_rich Low_complexity Low_complexity 1 28 0 1 1719 200 306 0 0 chr3 148662948 148662997 -10936786 + (TATG)n Simple_repeat Simple_repeat 2 50 0 1 1719 213 323 0 0 chr3 148663696 148663758 -10936025 + ID4 SINE ID 1 62 -21 1 1719 531 291 73 56 chr3 148664084 148664371 -10935412 + B4A SINE B4 1 292 0 1 1719 243 61 0 0 chr3 148664392 148664425 -10935358 + (CA)n Simple_repeat Simple_repeat 2 34 0 1 1719 231 36 0 0 chr3 148665217 148665245 -10934538 + (TG)n Simple_repeat Simple_repeat 2 29 0 1 1719 938 138 14 0 chr3 148665254 148665399 -10934384 - B1_Mus2 SINE Alu 0 147 1 1 1719 300 181 99 69 chr3 148665994 148666095 -10933688 + B1F SINE Alu 9 112 -37 1 1719 423 0 0 0 chr3 148666385 148666432 -10933351 + (TC)n Simple_repeat Simple_repeat 1 47 0 1 1719 288 0 0 0 chr3 148666432 148666463 -10933320 + (CA)n Simple_repeat Simple_repeat 1 32 0 1 1719 342 217 160 8 chr3 148667125 148667235 -10932548 - PB1D9 SINE Alu -1 119 2 1 1719 208 346 0 0 chr3 148667242 148667320 -10932463 + C-rich Low_complexity Low_complexity 2 79 0 1 1719 270 333 56 51 chr3 148668355 148668551 -10931232 + LTR86A1 LTR ERVL 18 214 -299 1 1719 183 100 0 0 chr3 148668557 148668587 -10931196 + (TTG)n Simple_repeat Simple_repeat 2 31 0 1 1719 293 248 59 17 chr3 148669143 148669262 -10930521 - L2c LINE L2 -4 3383 3260 1 1719 249 298 9 63 chr3 148669813 148669924 -10929859 + MIR3 SINE MIR 74 178 -30 1 1719 534 298 89 38 chr3 148670174 148670387 -10929396 - B4 SINE B4 -63 229 6 1 1719 848 258 59 3 chr3 148670599 148670887 -10928896 + L3 LINE CR1 2010 2313 -2176 1 1719 514 362 67 22 chr3 148672197 148672657 -10927126 + L3 LINE CR1 3325 3805 -684 1 1719 185 333 111 0 chr3 148673016 148673097 -10926686 - MIRb SINE MIR -18 250 161 2 1719 333 323 136 11 chr3 148673654 148673845 -10925938 - ID_B1 SINE B4 -5 219 5 2 1719 1324 94 15 40 chr3 148674719 148674919 -10924864 - B2_Mm2 SINE B2 0 195 1 2 1719 328 296 37 0 chr3 148675014 148675122 -10924661 + ID_B1 SINE B4 102 213 -11 2 1719 200 149 0 21 chr3 148676447 148676495 -10923288 + GA-rich Low_complexity Low_complexity 1 47 0 2 1719 284 259 0 47 chr3 148676635 148676720 -10923063 - RSINE1 SINE B4 -77 88 8 2 1719 316 352 64 26 chr3 148676851 148677163 -10922620 + L1M5 LINE L1 4724 5047 -1099 2 1719 219 167 0 0 chr3 148677268 148677310 -10922473 + (CAG)n Simple_repeat Simple_repeat 3 44 0 2 1719 703 201 8 0 chr3 148678611 148678745 -10921038 + B1_Mus2 SINE Alu 1 135 -12 2 1719 272 25 50 0 chr3 148678745 148678785 -10920998 + (CAAA)n Simple_repeat Simple_repeat 3 44 0 2 1719 309 224 0 0 chr3 148679067 148679125 -10920658 - B1F1 SINE Alu -90 59 2 2 1719 24 0 0 0 chr3 148679771 148679795 -10919988 + AT_rich Low_complexity Low_complexity 1 24 0 2 1719 21 0 0 0 chr3 148680000 148680021 -10919762 + AT_rich Low_complexity Low_complexity 1 21 0 2 1719 4565 10 0 0 chr3 148681521 148682022 -10917761 + L1Md_T LINE L1 6082 6582 0 2 1719 428 220 60 60 chr3 148682169 148682319 -10917464 - B1_Mur4 SINE Alu 0 150 1 2 1719 239 306 126 42 chr3 148684651 148684890 -10914893 + L3 LINE CR1 4098 4356 -133 2 1719 1014 46 77 0 chr3 148686925 148687055 -10912728 + B1_Mus1 SINE Alu 2 141 -7 2 1719 258 32 0 0 chr3 148687059 148687090 -10912693 + (CAAAA)n Simple_repeat Simple_repeat 4 34 0 2 1719 443 308 98 6 chr3 148688181 148688364 -10911419 - MIR SINE MIR -4 258 59 2 1719 842 202 67 6 chr3 148689034 148689213 -10910570 - B3 SINE B2 0 216 27 2 1719 253 346 15 45 chr3 148689547 148689588 -10910195 - B1F SINE Alu -19 130 7 2 1719 266 298 0 35 chr3 148689588 148689675 -10910108 - ID_B1 SINE B4 -53 171 88 2 1719 359 331 0 27 chr3 148689790 148689936 -10909847 - RSINE1 SINE B4 -19 146 5 2 1719 286 207 0 0 chr3 148690129 148690187 -10909596 - L1MC4 LINE L1 -964 7078 7021 2 1719 240 334 123 45 chr3 148690743 148691125 -10908658 - L1MC4 LINE L1 -993 6889 6478 2 1719 1009 0 0 0 chr3 148691895 148692002 -10907781 + U6 snRNA snRNA 1 107 0 2 1719 4607 6 0 0 chr3 148692002 148692506 -10907277 + L1Md_A LINE L1 6079 6582 0 2 1719 626 237 34 34 chr3 148692842 148693017 -10906766 + B3A SINE B2 2 176 -22 2 1719 504 263 56 51 chr3 148693278 148693474 -10906309 + B3A SINE B2 2 198 0 2 1719 1183 109 0 14 chr3 148693950 148694323 -10905460 + (GAAA)n Simple_repeat Simple_repeat 1 367 0 2 1719 306 167 0 0 chr3 148694324 148694384 -10905399 + GA-rich Low_complexity Low_complexity 1 60 0 2 1719 607 178 18 12 chr3 148694509 148694680 -10905103 + CT-rich Low_complexity Low_complexity 3 174 0 2 1719 7414 72 24 5 chr3 148694706 148696310 -10903473 + L1_Mus2 LINE L1 4940 6565 -1 2 1719 846 20 0 0 chr3 148696314 148696414 -10903369 + (GAA)n Simple_repeat Simple_repeat 3 102 0 2 1719 729 171 8 0 chr3 148696777 148696900 -10902883 - B1_Mus2 SINE Alu 0 147 24 2 1719 312 83 0 0 chr3 148696919 148696967 -10902816 + (TG)n Simple_repeat Simple_repeat 2 49 0 2 1719 656 107 8 0 chr3 148696971 148697092 -10902691 + (GA)n Simple_repeat Simple_repeat 1 122 0 2 1719 744 254 52 73 chr3 148697586 148697875 -10901908 + B4A SINE B4 2 284 -8 2 1719 222 290 0 16 chr3 148698046 148698109 -10901674 + ID4_ SINE ID 2 63 -20 2 1719 1218 179 56 34 chr3 148698423 148698790 -10900993 + RLTR31A_Mm LTR ERVK 91 508 -53 2 1719 229 191 250 0 chr3 148698804 148698872 -10900911 + RLTR31A_Mm LTR ERVK 465 549 -8 2 1719 1182 70 0 0 chr3 148698872 148699015 -10900768 + B1_Mus1 SINE Alu 3 145 -3 2 1719 477 0 0 0 chr3 148699015 148699068 -10900715 + (TAA)n Simple_repeat Simple_repeat 2 54 0 2 1719 25 65 0 0 chr3 148699069 148699115 -10900668 + AT_rich Low_complexity Low_complexity 1 46 0 2 1719 469 261 36 14 chr3 148699862 148700002 -10899781 + RSINE1 SINE B4 1 143 -22 2 1719 362 300 0 0 chr3 148700770 148700850 -10898933 + ID4 SINE ID 1 80 -3 2 1719 372 143 30 38 chr3 148700907 148701038 -10898745 + (TA)n Simple_repeat Simple_repeat 2 131 0 2 1719 378 61 0 0 chr3 148701040 148701089 -10898694 + (TAGA)n Simple_repeat Simple_repeat 1 49 0 2 1719 209 33 0 32 chr3 148701395 148701426 -10898357 + (TGG)n Simple_repeat Simple_repeat 2 31 0 2 1719 492 48 0 0 chr3 148701426 148701489 -10898294 + (GGA)n Simple_repeat Simple_repeat 1 63 0 2 1719 325 302 61 15 chr3 148702099 148702230 -10897553 + ID_B1 SINE B4 81 217 -7 2 1719 387 303 130 12 chr3 148702788 148703042 -10896741 + B4A SINE B4 3 286 -6 2 1719 223 259 26 43 chr3 148703065 148703182 -10896601 + (CA)n Simple_repeat Simple_repeat 2 116 0 2 1719 32 26 0 0 chr3 148703702 148703741 -10896042 + AT_rich Low_complexity Low_complexity 1 39 0 2 1719 207 190 0 23 chr3 148704432 148704475 -10895308 + CT-rich Low_complexity Low_complexity 1 42 0 2 1719 449 237 10 0 chr3 148706154 148706251 -10893532 + PB1D9 SINE Alu 1 98 -22 2 1719 297 0 0 0 chr3 148706336 148706369 -10893414 + (TG)n Simple_repeat Simple_repeat 2 34 0 2 1719 753 199 0 0 chr3 148706371 148706507 -10893276 - B1_Mus2 SINE Alu -7 140 5 2 1719 495 0 0 0 chr3 148708329 148708384 -10891399 + (CA)n Simple_repeat Simple_repeat 1 55 0 2 1719 260 277 62 0 chr3 148708476 148708588 -10891195 + B1_Mur2 SINE Alu 6 124 -25 2 1719 408 216 22 11 chr3 148708816 148708905 -10890878 - B1_Mur1 SINE Alu -28 121 32 2 1719 405 58 0 0 chr3 148709329 148709381 -10890402 + (TTAG)n Simple_repeat Simple_repeat 3 54 0 2 1719 723 196 23 0 chr3 148709382 148709515 -10890268 - B1_Mus1 SINE Alu -12 136 1 2 1719 363 23 0 0 chr3 148710225 148710269 -10889514 + (TC)n Simple_repeat Simple_repeat 2 45 0 2 1719 218 288 17 0 chr3 148710507 148710566 -10889217 + ID4 SINE ID 2 61 -22 2 1719 450 0 0 0 chr3 148710636 148710686 -10889097 + (CA)n Simple_repeat Simple_repeat 1 50 0 2 1719 799 182 7 20 chr3 148710906 148711057 -10888726 + B1_Mur3 SINE Alu 1 149 0 2 1719 21 0 0 0 chr3 148711099 148711120 -10888663 + AT_rich Low_complexity Low_complexity 1 21 0 2 1719 384 22 0 0 chr3 148711122 148711167 -10888616 + (TG)n Simple_repeat Simple_repeat 2 46 0 2 1719 408 279 24 32 chr3 148711168 148711294 -10888489 - B3A SINE B2 -73 125 1 2 1719 260 327 90 28 chr3 148712611 148712822 -10886961 - ID_B1 SINE B4 0 224 1 2 1719 198 0 0 0 chr3 148712875 148712897 -10886886 + (A)n Simple_repeat Simple_repeat 1 22 0 2 1719 1158 65 4 0 chr3 148713697 148713954 -10885829 + (TG)n Simple_repeat Simple_repeat 1 258 0 2 1719 354 23 0 0 chr3 148714204 148714247 -10885536 + (TATG)n Simple_repeat Simple_repeat 2 44 0 2 1719 219 338 12 0 chr3 148714767 148714847 -10884936 - L2a LINE L2 -4 3422 3342 2 1719 271 224 0 107 chr3 148715223 148715298 -10884485 - ID_B1 SINE B4 -6 218 152 2 1719 1386 31 17 7 chr3 148715436 148715898 -10883885 + (TTAGGG)n Simple_repeat Simple_repeat 1 466 0 2 1719 229 346 60 36 chr3 148716451 148716619 -10883164 - MER3 DNA MER1_type -30 179 8 2 1719 326 318 22 50 chr3 148717370 148717509 -10882274 - B1F SINE Alu -2 147 13 2 1719 25 0 0 0 chr3 148718838 148718863 -10880920 + AT_rich Low_complexity Low_complexity 1 25 0 2 1719 988 66 51 7 chr3 148719582 148719720 -10880063 + B1_Mus1 SINE Alu 5 148 0 2 1719 1121 39 0 37 chr3 148720920 148721107 -10878676 + (TG)n Simple_repeat Simple_repeat 1 180 0 2 1719 484 280 169 46 chr3 148721108 148721303 -10878480 - B4A SINE B4 -26 266 48 2 1719 943 50 0 58 chr3 148721476 148721667 -10878116 + (CA)n Simple_repeat Simple_repeat 1 180 0 2 1719 999 31 0 64 chr3 148721687 148722381 -10877402 + (CA)n Simple_repeat Simple_repeat 1 649 0 2 1719 384 241 218 0 chr3 148722537 148722670 -10877113 + RSINE1 SINE B4 3 164 -1 2 1719 466 221 12 0 chr3 148722689 148722861 -10876922 + (CA)n Simple_repeat Simple_repeat 1 174 0 2 1719 484 214 6 6 chr3 148722886 148723065 -10876718 + (CA)n Simple_repeat Simple_repeat 1 179 0 2 1719 591 218 55 24 chr3 148723241 148723368 -10876415 + B1_Mur1 SINE Alu 13 143 -6 2 1719 195 69 0 0 chr3 148723370 148723399 -10876384 + (GGA)n Simple_repeat Simple_repeat 3 31 0 2 1719 763 144 0 44 chr3 148723410 148723591 -10876192 + GA-rich Low_complexity Low_complexity 5 177 0 2 1719 225 139 0 0 chr3 148723657 148723700 -10876083 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 2 1719 200 208 0 20 chr3 148723882 148723931 -10875852 + GA-rich Low_complexity Low_complexity 1 48 0 2 1719 383 135 29 29 chr3 148724483 148724620 -10875163 + (CAGA)n Simple_repeat Simple_repeat 2 138 0 2 1719 414 0 0 0 chr3 148724623 148724669 -10875114 + (GA)n Simple_repeat Simple_repeat 2 47 0 2 1719 576 278 42 55 chr3 148724712 148725001 -10874782 - B4A SINE B4 -3 289 5 2 1719 495 0 0 0 chr3 148725033 148725088 -10874695 + (TGG)n Simple_repeat Simple_repeat 2 56 0 2 1719 426 79 0 0 chr3 148726225 148726288 -10873495 + (TG)n Simple_repeat Simple_repeat 2 64 0 2 1719 499 306 86 54 chr3 148726293 148726573 -10873210 - B4 SINE B4 -2 290 2 2 1719 267 231 21 136 chr3 148727217 148727357 -10872426 + ID_B1 SINE B4 49 172 -52 2 1719 413 207 11 11 chr3 148727282 148727370 -10872413 + B1F1 SINE Alu 19 106 -43 2 1719 363 323 89 26 chr3 148727822 148728013 -10871770 + B4A SINE B4 5 207 -85 2 1719 914 301 50 52 chr3 148728104 148728587 -10871196 + Charlie1a DNA MER1_type 420 901 -554 2 1719 659 264 36 23 chr3 148728603 148728807 -10870976 - B3A SINE B2 -6 210 2 2 1719 265 340 115 32 chr3 148728828 148729141 -10870642 + Charlie1a DNA MER1_type 921 1259 -196 2 1719 417 295 25 93 chr3 148729147 148729308 -10870475 + RSINE1 SINE B4 2 151 -14 3 1719 777 136 250 7 chr3 148729337 148729485 -10870298 - B2_Mm2 SINE B2 -10 185 2 3 1719 335 226 17 76 chr3 148729570 148729742 -10870041 + Charlie1a DNA MER1_type 1249 1410 -45 2 1719 297 188 0 30 chr3 148729737 148729803 -10869980 - ID_B1 SINE B4 -1 223 160 3 1719 438 316 102 11 chr3 148729798 148729974 -10869809 - ID_B1 SINE B4 -10 214 23 3 1719 1044 24 0 0 chr3 148730207 148730330 -10869453 + (GAAAA)n Simple_repeat Simple_repeat 3 125 0 3 1719 350 306 8 46 chr3 148730612 148730742 -10869041 + ID_B1 SINE B4 79 203 -21 3 1719 237 245 0 0 chr3 148730836 148730885 -10868898 - ID4 SINE ID -4 79 31 3 1719 422 152 49 33 chr3 148732341 148732463 -10867320 + GA-rich Low_complexity Low_complexity 5 128 0 3 1719 213 158 26 0 chr3 148732479 148732517 -10867266 + GA-rich Low_complexity Low_complexity 1 39 0 3 1719 442 229 9 27 chr3 148733971 148734083 -10865700 - B1F2 SINE Alu 0 149 40 3 1719 943 113 11 28 chr3 148736253 148736435 -10863348 + G-rich Low_complexity Low_complexity 1 179 0 3 1719 452 99 0 14 chr3 148736435 148736507 -10863276 + (GGGGA)n Simple_repeat Simple_repeat 3 73 0 3 1719 328 329 0 0 chr3 148736750 148736835 -10862948 + B4A SINE B4 200 284 -8 3 1719 1127 128 31 21 chr3 148736964 148737155 -10862628 + B2_Mm2 SINE B2 1 193 -2 3 1719 1084 94 0 23 chr3 148739567 148739741 -10860042 + (TCC)n Simple_repeat Simple_repeat 3 172 0 3 1719 231 221 11 23 chr3 148741444 148741532 -10858251 + (TA)n Simple_repeat Simple_repeat 2 88 0 3 1719 790 192 44 50 chr3 148741558 148741739 -10858044 - B3A SINE B2 -16 182 3 3 1719 815 333 85 43 chr3 148741830 148742408 -10857375 - L3 LINE CR1 -257 4232 3631 3 1719 222 105 0 0 chr3 148743034 148743072 -10856711 + (CAAAAA)n Simple_repeat Simple_repeat 3 40 0 3 1719 384 242 254 24 chr3 148743183 148743352 -10856431 + ID_B1 SINE B4 17 224 0 3 1719 301 260 39 20 chr3 148743822 148743924 -10855859 - MIRm SINE MIR -120 156 53 3 1719 363 44 0 0 chr3 148744493 148744538 -10855245 + (TC)n Simple_repeat Simple_repeat 2 46 0 3 1719 676 267 16 16 chr3 148744555 148744738 -10855045 - ID_B1 SINE B4 -14 210 28 3 1719 186 43 0 0 chr3 148745276 148745299 -10854484 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 3 1719 23 33 0 0 chr3 148745544 148745574 -10854209 + AT_rich Low_complexity Low_complexity 1 30 0 3 1719 180 0 0 0 chr3 148748733 148748753 -10851030 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 3 1719 243 263 13 13 chr3 148748833 148748910 -10850873 - B4A SINE B4 -91 201 125 3 1719 678 101 49 25 chr3 148749039 148749161 -10850622 - B1_Mur1 SINE Alu -1 148 24 3 1719 281 310 65 75 chr3 148749069 148749268 -10850515 - B4 SINE B4 -88 204 8 3 1719 894 88 0 0 chr3 148749344 148749469 -10850314 + (TG)n Simple_repeat Simple_repeat 2 126 0 3 1719 1009 33 0 100 chr3 148750152 148750352 -10849431 + (TC)n Simple_repeat Simple_repeat 1 180 0 3 1719 237 210 219 12 chr3 148750906 148750988 -10848795 + B4 SINE B4 169 267 -25 3 1719 330 132 0 0 chr3 148751030 148751083 -10848700 + (CA)n Simple_repeat Simple_repeat 1 53 0 3 1719 189 0 0 0 chr3 148751310 148751331 -10848452 + (TTAA)n Simple_repeat Simple_repeat 3 23 0 3 1719 21 0 0 0 chr3 148752216 148752237 -10847546 + AT_rich Low_complexity Low_complexity 1 21 0 3 1719 294 0 21 42 chr3 148753559 148753607 -10846176 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 3 1719 263 196 263 32 chr3 148753981 148754076 -10845707 + B3A SINE B2 1 117 -81 3 1719 366 23 0 0 chr3 148754282 148754325 -10845458 + (CA)n Simple_repeat Simple_repeat 1 43 0 3 1719 216 158 0 0 chr3 148755974 148756012 -10843771 + A-rich Low_complexity Low_complexity 1 38 0 3 1719 21 36 0 0 chr3 148757093 148757121 -10842662 + AT_rich Low_complexity Low_complexity 1 28 0 3 1719 529 95 24 0 chr3 148757373 148757457 -10842326 + B1_Mur4 SINE Alu 65 150 0 3 1719 306 0 0 0 chr3 148757457 148757491 -10842292 + (A)n Simple_repeat Simple_repeat 1 34 0 3 1719 311 264 32 61 chr3 148757677 148757807 -10841976 + PB1D9 SINE Alu 5 133 -17 3 1719 407 141 11 0 chr3 148757915 148758007 -10841776 + CT-rich Low_complexity Low_complexity 2 94 0 3 1719 305 316 32 171 chr3 148758034 148758221 -10841562 - RSINE1 SINE B4 0 165 5 3 1719 229 284 109 39 chr3 148758458 148758586 -10841197 + B1F SINE Alu 1 137 -12 3 1719 1887 172 64 21 chr3 148758707 148759082 -10840701 - RMER1C Other Other -173 1169 779 3 1719 195 42 0 0 chr3 148760310 148760334 -10839449 + (TTA)n Simple_repeat Simple_repeat 1 24 0 3 1719 488 240 0 16 chr3 148760335 148760477 -10839306 - B1_Mur1 SINE Alu -7 142 3 3 1719 1134 87 0 0 chr3 148760522 148760847 -10838936 + (CA)n Simple_repeat Simple_repeat 1 325 0 3 1719 771 194 7 0 chr3 148760879 148761018 -10838765 + B1F1 SINE Alu 5 144 -5 3 1719 371 272 40 8 chr3 148763141 148763267 -10836516 + RSINE1 SINE B4 8 137 -28 3 1719 24 0 0 0 chr3 148766324 148766348 -10833435 + AT_rich Low_complexity Low_complexity 1 24 0 3 1719 402 325 36 88 chr3 148766410 148766717 -10833066 - B4A SINE B4 0 292 2 3 1720 307 336 23 0 chr3 148767552 148767680 -10832103 - MER94 DNA AcHobo -3 131 1 3 1720 354 397 13 6 chr3 148767947 148768104 -10831679 + RSINE1 SINE B4 3 160 -5 3 1720 22 35 0 0 chr3 148768142 148768171 -10831612 + AT_rich Low_complexity Low_complexity 1 29 0 3 1720 316 211 245 19 chr3 148769144 148769303 -10830480 + B4A SINE B4 3 197 -95 3 1720 248 254 0 17 chr3 148769374 148769434 -10830349 + (CATA)n Simple_repeat Simple_repeat 2 60 0 3 1720 213 121 0 0 chr3 148769440 148769473 -10830310 + (GA)n Simple_repeat Simple_repeat 2 34 0 3 1720 518 297 129 66 chr3 148769579 148769867 -10829916 + RMER13A LTR ERVK 30 337 -523 3 1720 352 0 42 0 chr3 148769867 148769915 -10829868 + (CAAAA)n Simple_repeat Simple_repeat 2 51 0 3 1720 518 297 129 66 chr3 148769915 148770037 -10829746 + RMER13A LTR ERVK 338 466 -394 3 1720 3000 223 45 9 chr3 148770619 148771307 -10828476 + Lx9 LINE L1 6354 7066 -578 3 1720 768 63 0 0 chr3 148771364 148771475 -10828308 + (CA)n Simple_repeat Simple_repeat 1 111 0 3 1720 242 198 36 24 chr3 148771495 148771578 -10828205 + Lx9 LINE L1 7517 7600 -44 3 1720 876 59 0 0 chr3 148771588 148771706 -10828077 - B1_Mm SINE Alu -29 118 1 3 1720 735 328 73 8 chr3 148772282 148772543 -10827240 + B4A SINE B4 15 292 0 3 1720 1071 278 51 25 chr3 148773263 148773617 -10826166 - MLT1A0 LTR MaLR -1 364 2 3 1720 217 345 44 11 chr3 148773930 148774021 -10825762 - MIRb SINE MIR -145 123 30 3 1720 189 291 68 38 chr3 148774926 148775058 -10824725 + MIRb SINE MIR 25 160 -108 3 1720 234 306 111 28 chr3 148776474 148776726 -10823057 + B4 SINE B4 2 274 -18 3 1720 261 182 0 0 chr3 148776787 148776842 -10822941 + (CA)n Simple_repeat Simple_repeat 2 56 0 3 1720 198 0 0 0 chr3 148776855 148776877 -10822906 + (CATA)n Simple_repeat Simple_repeat 2 23 0 3 1720 232 326 49 21 chr3 148776942 148777086 -10822697 + L1MC5 LINE L1 7318 7465 -496 3 1720 1075 97 0 0 chr3 148777467 148777611 -10822172 + B1_Mus1 SINE Alu 5 148 0 3 1720 320 326 53 69 chr3 148777749 148777937 -10821846 + B4A SINE B4 30 214 -78 3 1720 406 230 17 58 chr3 148779567 148779687 -10820096 + ID_B1 SINE B4 1 115 -109 3 1720 271 242 156 31 chr3 148779822 148779950 -10819833 + MIRb SINE MIR 52 195 -73 3 1720 686 184 127 44 chr3 148780726 148780931 -10818852 - ID_B1 SINE B4 0 224 3 3 1720 537 296 20 50 chr3 148782237 148782278 -10817505 - B3A SINE B2 -5 193 158 3 1720 441 116 0 0 chr3 148782278 148782347 -10817436 + (CA)n Simple_repeat Simple_repeat 1 69 0 3 1720 537 296 20 50 chr3 148782347 148782504 -10817279 - B3A SINE B2 -41 157 1 3 1720 249 139 0 0 chr3 148782677 148782720 -10817063 + (CAT)n Simple_repeat Simple_repeat 2 44 0 3 1720 571 288 100 32 chr3 148782722 148782912 -10816871 - ID_B1 SINE B4 -14 210 8 3 1720 694 307 22 35 chr3 148783494 148783720 -10816063 - ID_B1 SINE B4 0 224 2 3 1720 630 288 7 16 chr3 148784120 148784332 -10815451 + B3A SINE B2 3 216 0 3 1720 655 293 21 0 chr3 148784353 148784544 -10815239 + B3 SINE B2 1 195 -21 3 1720 372 22 0 0 chr3 148784546 148784591 -10815192 + (CA)n Simple_repeat Simple_repeat 1 45 0 3 1720 216 324 29 14 chr3 148784654 148784723 -10815060 + ID SINE ID 1 70 -154 3 1720 329 338 68 19 chr3 148785327 148785532 -10814251 - L1MC1 LINE L1 -1 6332 6118 3 1720 269 267 57 9 chr3 148785551 148785563 -10814220 - L1MC LINE L1 -765 5414 5403 3 1720 482 0 17 0 chr3 148785563 148785621 -10814162 + (CA)n Simple_repeat Simple_repeat 1 59 0 3 1720 287 272 54 11 chr3 148785621 148785714 -10814069 - L1MC LINE L1 -746 5400 5304 3 1720 939 258 32 27 chr3 148785815 148786189 -10813594 + RMER17C LTR ERVK 3 378 -32 3 1720 3640 13 0 0 chr3 148786784 148787180 -10812603 - MTA_Mm LTR MaLR 0 396 1 3 1720 9441 25 4 2 chr3 148787180 148788276 -10811507 - MTA_Mm-int LTR MaLR 0 1098 1 3 1720 3640 13 0 0 chr3 148788276 148788672 -10811111 - MTA_Mm LTR MaLR 0 396 1 3 1720 341 293 137 17 chr3 148788720 148788869 -10810914 - L1M3 LINE L1 -1193 4947 4776 3 1720 198 0 0 0 chr3 148788869 148788891 -10810892 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 3 1720 341 301 139 24 chr3 148788891 148789012 -10810771 - L1M3 LINE L1 -1365 4781 4655 3 1720 740 283 68 45 chr3 148789012 148789364 -10810419 - L1MC LINE L1 -2058 4088 3729 3 1720 703 204 0 58 chr3 148789376 148789532 -10810251 - B1_Mm SINE Alu 0 147 1 3 1720 229 216 20 0 chr3 148789532 148789583 -10810200 - L1MC LINE L1 -2393 3753 3702 3 1720 240 260 0 0 chr3 148789581 148789631 -10810152 - L1M4 LINE L1 -2405 3741 3692 3 1720 251 247 11 0 chr3 148789653 148789742 -10810041 + CT-rich Low_complexity Low_complexity 3 92 0 3 1720 277 303 112 65 chr3 148790305 148790610 -10809173 + MTE2b LTR MaLR 58 379 0 3 1720 327 104 0 0 chr3 148790906 148790954 -10808829 + (TA)n Simple_repeat Simple_repeat 2 49 0 3 1720 24 67 0 0 chr3 148791160 148791205 -10808578 + AT_rich Low_complexity Low_complexity 1 45 0 3 1720 530 252 0 0 chr3 148791492 148791607 -10808176 + ID_B1 SINE B4 94 208 -16 3 1720 453 278 49 79 chr3 148791626 148791829 -10807954 + B3A SINE B2 1 197 -1 4 1720 1480 168 29 92 chr3 148791882 148792229 -10807554 + ORR1B1 LTR MaLR 41 365 -29 4 1720 247 268 0 0 chr3 148792250 148792306 -10807477 + RSINE1 SINE B4 72 127 -38 4 1720 366 23 0 0 chr3 148793153 148793196 -10806587 + (TG)n Simple_repeat Simple_repeat 1 43 0 4 1720 387 0 0 0 chr3 148793244 148793287 -10806496 + (CA)n Simple_repeat Simple_repeat 1 43 0 4 1720 468 48 0 0 chr3 148793816 148793879 -10805904 + (TG)n Simple_repeat Simple_repeat 2 64 0 4 1720 570 328 32 8 chr3 148793932 148794174 -10805609 + MLT1A0 LTR MaLR 112 401 -7 4 1720 434 206 9 53 chr3 148794800 148794913 -10804870 - B1F1 SINE Alu -1 148 41 4 1720 336 77 0 0 chr3 148794963 148795015 -10804768 + (CA)n Simple_repeat Simple_repeat 2 53 0 4 1720 183 292 0 0 chr3 148796619 148796667 -10803116 + MER5B DNA MER1_type 6 53 -125 4 1720 1783 82 19 4 chr3 148796677 148796933 -10802850 + L1_Mus2 LINE L1 6295 6554 -12 4 1720 180 0 0 0 chr3 148796945 148796965 -10802818 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 4 1720 189 121 0 0 chr3 148797070 148797103 -10802680 + (TTTA)n Simple_repeat Simple_repeat 4 36 0 4 1720 463 346 23 0 chr3 148797161 148797291 -10802492 - RSINE1 SINE B4 -14 151 19 4 1720 397 301 25 38 chr3 148797350 148797509 -10802274 + MER5A1 DNA MER1_type 3 159 -7 4 1720 632 90 0 20 chr3 148798837 148798939 -10800844 + (CCCCCT)n Simple_repeat Simple_repeat 5 104 0 4 1720 678 309 34 0 chr3 148799098 148799302 -10800481 + B4A SINE B4 1 211 -81 4 1720 273 337 0 0 chr3 148799359 148799445 -10800338 + (CA)n Simple_repeat Simple_repeat 1 86 0 4 1720 268 268 16 74 chr3 148799797 148799918 -10799865 - MER112 DNA MER1_type -141 120 7 4 1720 639 37 0 0 chr3 148800856 148800938 -10798845 + (TTCC)n Simple_repeat Simple_repeat 1 82 0 4 1720 987 58 0 0 chr3 148800938 148801076 -10798707 + (TCTCC)n Simple_repeat Simple_repeat 1 139 0 4 1720 358 319 14 49 chr3 148801095 148801237 -10798546 - ID_B1 SINE B4 -8 216 80 4 1720 597 251 192 6 chr3 148801306 148801478 -10798305 - B3 SINE B2 -12 204 1 4 1720 578 306 14 0 chr3 148801496 148801643 -10798140 - B1F SINE Alu 0 149 1 4 1720 264 100 0 0 chr3 148802886 148802926 -10796857 + (TAA)n Simple_repeat Simple_repeat 2 41 0 4 1720 450 0 0 0 chr3 148803419 148803469 -10796314 + (CA)n Simple_repeat Simple_repeat 2 51 0 4 1720 453 306 18 64 chr3 148803469 148803640 -10796143 - RSINE1 SINE B4 0 165 3 4 1720 492 275 112 76 chr3 148804098 148804401 -10795382 + ORR1E LTR MaLR 3 316 -43 4 1720 408 296 135 31 chr3 148805102 148805294 -10794489 - ID_B1 SINE B4 -11 213 2 4 1720 1965 114 115 33 chr3 148805632 148805996 -10793787 - ORR1B1 LTR MaLR 0 394 1 4 1720 501 265 124 10 chr3 148806294 148806496 -10793287 - ORR1D2 LTR MaLR -145 225 1 4 1720 599 69 0 38 chr3 148806937 148807043 -10792740 + (TG)n Simple_repeat Simple_repeat 1 102 0 4 1720 414 329 0 91 chr3 148807049 148807093 -10792690 - B4A SINE B4 -28 264 222 4 1720 1191 89 78 0 chr3 148807093 148807273 -10792510 - B2_Mm2 SINE B2 -1 194 1 4 1720 414 329 0 91 chr3 148807273 148807382 -10792401 - B4A SINE B4 -71 221 125 4 1720 479 95 14 0 chr3 148807386 148807460 -10792323 + (TC)n Simple_repeat Simple_repeat 2 76 0 4 1720 283 255 9 130 chr3 148807493 148807559 -10792224 - B4A SINE B4 -197 95 30 4 1720 1375 85 32 0 chr3 148807559 148807747 -10792036 - B2_Mm2 SINE B2 0 195 2 4 1720 283 255 9 130 chr3 148807747 148807788 -10791995 - B4A SINE B4 -263 29 1 4 1720 236 309 82 10 chr3 148809318 148809416 -10790367 - MIR SINE MIR -145 117 13 4 1720 882 189 0 0 chr3 148810236 148810416 -10789367 + GA-rich Low_complexity Low_complexity 1 180 0 4 1720 842 284 58 39 chr3 148812598 148812893 -10786890 + MTEa LTR MaLR 7 312 -67 4 1720 1177 84 11 11 chr3 148812893 148813073 -10786710 + (TTCCC)n Simple_repeat Simple_repeat 1 180 0 4 1720 842 284 58 39 chr3 148813073 148813088 -10786695 + MTEa LTR MaLR 313 323 -56 4 1720 222 118 0 0 chr3 148813102 148813136 -10786647 + (TTTCC)n Simple_repeat Simple_repeat 4 37 0 4 1720 334 152 0 17 chr3 148813136 148813196 -10786587 + MTEa LTR MaLR 314 372 -7 4 1720 339 160 61 0 chr3 148814129 148814210 -10785573 + PB1D10 SINE Alu 30 123 -4 4 1720 248 186 0 17 chr3 148814242 148814302 -10785481 + CT-rich Low_complexity Low_complexity 2 60 0 4 1720 231 263 0 0 chr3 148814660 148814717 -10785066 + CR1_Mam LINE CR1 1457 1513 -691 4 1720 217 240 12 62 chr3 148815317 148815397 -10784386 - MIRb SINE MIR -15 253 178 4 1720 191 282 84 0 chr3 148815506 148815577 -10784206 + L2c LINE L2 3245 3321 -66 4 1720 1015 45 22 15 chr3 148815659 148815794 -10783989 - B1_Mus2 SINE Alu -10 137 2 4 1720 524 186 171 7 chr3 148815832 148815984 -10783799 - L1M3 LINE L1 -698 5473 5300 4 1720 435 38 0 0 chr3 148815985 148816038 -10783745 + (TG)n Simple_repeat Simple_repeat 2 54 0 4 1720 546 351 60 54 chr3 148817394 148817692 -10782091 + MTEa LTR MaLR 1 300 -79 4 1720 207 0 0 0 chr3 148818033 148818056 -10781727 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 4 1720 26 50 0 0 chr3 148818170 148818210 -10781573 + AT_rich Low_complexity Low_complexity 1 40 0 4 1720 1350 134 13 4 chr3 148818229 148818454 -10781329 - Lx2 LINE L1 -6 6991 6765 4 1720 1914 66 4 0 chr3 148818454 148818698 -10781085 - Lx2 LINE L1 -363 6634 6390 4 1720 574 220 65 54 chr3 148819629 148819797 -10779986 + LTR82A LTR ERVL 153 322 -550 4 1720 206 0 0 65 chr3 148819915 148819946 -10779837 + (TTTTG)n Simple_repeat Simple_repeat 1 29 0 4 1720 576 230 0 62 chr3 148819947 148820091 -10779692 - B1_Mur3 SINE Alu -13 136 2 4 1720 180 0 0 0 chr3 148820141 148820161 -10779622 + (TG)n Simple_repeat Simple_repeat 1 20 0 4 1720 361 316 19 44 chr3 148820169 148820328 -10779455 - B4A SINE B4 -4 288 134 4 1720 358 311 94 51 chr3 148820433 148820687 -10779096 + LTR82A LTR ERVL 503 767 -105 4 1720 180 125 0 0 chr3 148821051 148821083 -10778700 + (CAGA)n Simple_repeat Simple_repeat 2 33 0 4 1720 525 115 0 0 chr3 148821087 148821183 -10778600 + (CA)n Simple_repeat Simple_repeat 2 97 0 4 1720 200 288 0 27 chr3 148823007 148823082 -10776701 + GA-rich Low_complexity Low_complexity 3 75 0 4 1720 427 276 8 17 chr3 148823980 148824098 -10775685 + B4A SINE B4 176 292 0 4 1720 736 144 0 46 chr3 148826013 148826132 -10773651 + B1_Mur4 SINE Alu 24 139 -11 4 1720 588 40 0 0 chr3 148826132 148826207 -10773576 + (CAAAA)n Simple_repeat Simple_repeat 2 76 0 4 1720 736 144 0 46 chr3 148826207 148826218 -10773565 + B1_Mur4 SINE Alu 140 148 -2 4 1720 858 169 12 6 chr3 148826873 148827040 -10772743 + URR1A DNA MER1_type 59 226 0 4 1720 231 114 0 0 chr3 148827266 148827301 -10772482 + (TCCC)n Simple_repeat Simple_repeat 1 35 0 4 1720 462 280 20 34 chr3 148827312 148827460 -10772323 - ID_B1 SINE B4 0 224 79 4 1720 498 304 14 0 chr3 148829358 148829506 -10770277 - RSINE1 SINE B4 -2 163 14 4 1720 183 306 81 0 chr3 148829621 148829683 -10770100 + MIRc SINE MIR 118 184 -84 4 1720 312 202 20 20 chr3 148831345 148831446 -10768337 + GA-rich Low_complexity Low_complexity 3 103 0 4 1720 673 201 36 7 chr3 148831505 148831645 -10768138 - B1_Mus1 SINE Alu 0 148 5 4 1720 406 287 132 96 chr3 148832363 148832644 -10767139 + B4 SINE B4 2 292 0 4 1720 429 36 0 0 chr3 148832836 148832891 -10766892 + (CAGA)n Simple_repeat Simple_repeat 2 56 0 4 1720 271 313 0 74 chr3 148833805 148833926 -10765857 + L2c LINE L2 3266 3377 -10 4 1720 305 209 220 0 chr3 148834100 148834191 -10765592 - B4A SINE B4 0 292 182 4 1720 232 282 11 56 chr3 148834222 148834312 -10765471 - B4A SINE B4 -199 93 8 4 1720 369 308 27 22 chr3 148835127 148835336 -10764447 + B4A SINE B4 1 292 0 4 1720 909 137 0 0 chr3 148836180 148836348 -10763435 + (TG)n Simple_repeat Simple_repeat 1 168 0 4 1720 315 0 0 0 chr3 148837003 148837038 -10762745 + (TG)n Simple_repeat Simple_repeat 2 36 0 4 1720 230 289 0 11 chr3 148837359 148837450 -10762333 - MLT1E1A LTR MaLR -45 635 546 4 1720 605 260 98 81 chr3 148837952 148838299 -10761484 + MTEb LTR MaLR 8 360 -19 4 1720 751 133 31 12 chr3 148838990 148839150 -10760633 + CT-rich Low_complexity Low_complexity 1 163 0 4 1720 611 128 9 52 chr3 148839157 148839272 -10760511 - B1_Mur3 SINE Alu -39 110 1 4 1720 896 173 6 0 chr3 148840420 148840588 -10759195 + URR1A DNA MER1_type 58 226 0 4 1720 22 0 0 0 chr3 148841063 148841085 -10758698 + AT_rich Low_complexity Low_complexity 1 22 0 4 1720 480 210 11 3 chr3 148841921 148842030 -10757753 + B1_Mur1 SINE Alu 34 141 -8 4 1720 237 33 0 0 chr3 148842056 148842086 -10757697 + (A)n Simple_repeat Simple_repeat 1 30 0 4 1720 761 167 0 29 chr3 148842441 148842577 -10757206 - B1_Mus2 SINE Alu -7 140 9 4 1720 345 109 0 0 chr3 148844496 148844551 -10755232 + (TG)n Simple_repeat Simple_repeat 2 56 0 4 1720 216 85 85 0 chr3 148844661 148844708 -10755075 + (TG)n Simple_repeat Simple_repeat 2 52 0 4 1720 489 342 39 66 chr3 148844762 148845019 -10754764 - B4A SINE B4 -40 252 3 4 1720 1308 13 0 0 chr3 148845782 148845932 -10753851 + (CATATA)n Simple_repeat Simple_repeat 2 151 0 4 1720 360 0 0 0 chr3 148845932 148845972 -10753811 + (TG)n Simple_repeat Simple_repeat 2 41 0 4 1720 416 74 74 0 chr3 148846369 148846464 -10753319 + (TAGA)n Simple_repeat Simple_repeat 4 105 0 4 1720 222 37 0 0 chr3 148847792 148847819 -10751964 + (A)n Simple_repeat Simple_repeat 1 27 0 4 1720 225 0 0 0 chr3 148848091 148848116 -10751667 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 4 1720 282 56 0 0 chr3 148848751 148848787 -10750996 + (TG)n Simple_repeat Simple_repeat 2 37 0 4 1720 223 93 47 0 chr3 148849792 148849835 -10749948 + (GGGA)n Simple_repeat Simple_repeat 1 45 0 4 1720 459 95 0 0 chr3 148849857 148849931 -10749852 + (GA)n Simple_repeat Simple_repeat 2 75 0 4 1720 365 102 0 33 chr3 148850440 148850501 -10749282 + B1_Mus2 SINE Alu 1 59 -88 4 1720 204 0 0 156 chr3 148850502 148850598 -10749185 + (CAGAG)n Simple_repeat Simple_repeat 5 85 0 4 1720 721 85 0 9 chr3 148850601 148850708 -10749075 + B1_Mm SINE Alu 42 147 0 5 1720 197 33 0 32 chr3 148850709 148850740 -10749043 + (CAAAA)n Simple_repeat Simple_repeat 1 30 0 5 1720 445 194 129 0 chr3 148851116 148851209 -10748574 + PB1D9 SINE Alu 9 113 -7 5 1720 282 29 0 0 chr3 148851223 148851258 -10748525 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 5 1720 393 149 0 0 chr3 148851693 148851760 -10748023 + (CA)n Simple_repeat Simple_repeat 2 68 0 5 1720 202 241 0 18 chr3 148852172 148852227 -10747556 + GA-rich Low_complexity Low_complexity 4 57 0 5 1720 364 280 37 0 chr3 148852474 148852581 -10747202 - B1F SINE Alu -3 146 36 5 1720 3122 56 20 13 chr3 148855216 148855613 -10744170 + MTB LTR MaLR 1 400 0 5 1720 697 184 19 64 chr3 148855933 148856090 -10743693 + B1_Mur4 SINE Alu 1 150 0 5 1720 520 91 23 0 chr3 148856358 148856446 -10743337 + (GA)n Simple_repeat Simple_repeat 2 91 0 5 1720 206 81 27 0 chr3 148856965 148857002 -10742781 + (CAAAA)n Simple_repeat Simple_repeat 2 39 0 5 1720 378 0 0 0 chr3 148857102 148857144 -10742639 + (CA)n Simple_repeat Simple_repeat 2 43 0 5 1720 301 236 27 14 chr3 148857479 148857552 -10742231 + ID4_ SINE ID 8 81 -2 5 1720 196 273 0 0 chr3 148858365 148858409 -10741374 - L2a LINE L2 -9 3417 3374 5 1720 360 0 0 0 chr3 148858572 148858612 -10741171 + (TG)n Simple_repeat Simple_repeat 2 41 0 5 1720 612 331 85 73 chr3 148859458 148859976 -10739807 + MLT1F LTR MaLR 15 538 -10 5 1720 300 53 0 0 chr3 148860234 148860272 -10739511 + (TAA)n Simple_repeat Simple_repeat 2 39 0 5 1720 418 260 10 39 chr3 148860279 148860383 -10739400 + RSINE1 SINE B4 5 105 -60 5 1720 630 130 0 40 chr3 148860391 148860543 -10739240 + (TCTCTG)n Simple_repeat Simple_repeat 3 148 0 5 1720 547 107 7 4 chr3 148861138 148861227 -10738556 + B2_Mm2 SINE B2 1 86 -112 5 1720 387 0 0 0 chr3 148861227 148861270 -10738513 + (TG)n Simple_repeat Simple_repeat 1 43 0 5 1720 436 248 58 33 chr3 148861270 148861301 -10738482 + B3A SINE B2 87 124 -74 5 1720 222 37 0 0 chr3 148861862 148861889 -10737894 + (A)n Simple_repeat Simple_repeat 1 27 0 5 1720 534 57 0 0 chr3 148862810 148862880 -10736903 + (TC)n Simple_repeat Simple_repeat 2 71 0 5 1720 267 224 75 0 chr3 148862903 148862970 -10736813 - B1_Mur2 SINE Alu -7 142 71 5 1720 669 180 131 15 chr3 148863060 148863190 -10736593 + B1_Mus1 SINE Alu 3 147 -1 5 1720 293 68 0 22 chr3 148863542 148863587 -10736196 + (TTTTC)n Simple_repeat Simple_repeat 3 46 0 5 1720 1229 109 0 20 chr3 148864021 148864218 -10735565 - L1Md_F2 LINE L1 0 6582 6390 5 1720 1794 153 41 92 chr3 148864318 148864729 -10735054 - MTB_Mm LTR MaLR -17 390 1 5 1720 21 0 0 0 chr3 148864775 148864796 -10734987 + AT_rich Low_complexity Low_complexity 1 21 0 5 1720 244 338 14 0 chr3 148864817 148864891 -10734892 + RMER30 DNA MER1_type 7 81 -121 5 1720 222 220 0 0 chr3 148864894 148864944 -10734839 + GA-rich Low_complexity Low_complexity 1 50 0 5 1720 4104 142 33 30 chr3 148865106 148865860 -10733923 - RMER6A LTR ERVK 0 756 1 5 1720 729 230 0 0 chr3 148867188 148867366 -10732417 + CT-rich Low_complexity Low_complexity 1 178 0 5 1720 712 187 0 48 chr3 148867366 148867512 -10732271 - B1_Mus2 SINE Alu 0 147 9 5 1720 751 139 121 46 chr3 148867711 148867884 -10731899 + B2_Mm2 SINE B2 2 187 -8 5 1720 1049 198 5 10 chr3 148867895 148868104 -10731679 + URR1B DNA MER1_type 17 224 -1 5 1720 326 309 35 46 chr3 148867929 148868126 -10731657 - CYRA11_Mm Unknown Y-chromosome -272 345 151 5 1720 180 77 0 0 chr3 148868612 148868638 -10731145 + (TAAAA)n Simple_repeat Simple_repeat 5 30 0 5 1720 1194 90 0 0 chr3 148869422 148869600 -10730183 + (TGAG)n Simple_repeat Simple_repeat 3 180 0 5 1720 366 354 38 8 chr3 148869630 148869761 -10730022 + B1_Mur2 SINE Alu 10 144 -5 5 1720 897 65 23 29 chr3 148869771 148869944 -10729839 + (GGAGA)n Simple_repeat Simple_repeat 2 173 0 5 1720 184 297 102 76 chr3 148872305 148872502 -10727281 - MIR SINE MIR -48 214 13 5 1720 320 305 114 0 chr3 148873980 148874085 -10725698 - ID_B1 SINE B4 -82 142 26 5 1720 2670 41 0 0 chr3 148874108 148874427 -10725356 + L1Md_T LINE L1 6264 6582 0 5 1720 265 256 80 86 chr3 148875618 148875793 -10723990 - ID_B1 SINE B4 -1 223 50 5 1720 404 338 0 20 chr3 148876067 148876215 -10723568 - ID_B1 SINE B4 0 224 80 5 1720 477 0 0 0 chr3 148878521 148878574 -10721209 + (CA)n Simple_repeat Simple_repeat 1 53 0 5 1720 22 0 0 0 chr3 148880317 148880339 -10719444 + AT_rich Low_complexity Low_complexity 1 22 0 5 1720 248 284 280 13 chr3 148880462 148880619 -10719164 + MIRc SINE MIR 58 256 -12 5 1720 252 0 0 0 chr3 148881117 148881145 -10718638 + (CA)n Simple_repeat Simple_repeat 2 29 0 5 1720 311 186 105 29 chr3 148882983 148883088 -10716695 + LTR81A LTR ERV1? 195 307 -1043 5 1720 605 217 31 25 chr3 148884600 148884761 -10715022 - MMAR1 DNA Mariner -63 1223 1062 5 1720 314 270 21 43 chr3 148884836 148884929 -10714854 - RSINE1 SINE B4 0 165 75 5 1720 336 312 39 78 chr3 148884945 148885098 -10714685 - B4 SINE B4 -144 148 2 5 1720 581 318 40 0 chr3 148885611 148885787 -10713996 - ID_B1 SINE B4 -41 183 1 5 1720 217 349 12 0 chr3 148886331 148886414 -10713369 + (TG)n Simple_repeat Simple_repeat 1 84 0 5 1720 249 250 105 0 chr3 148886466 148886542 -10713241 - B1_Mus2 SINE Alu -63 84 1 5 1720 256 275 29 7 chr3 148886475 148886558 -10713225 - B4 SINE B4 -138 154 73 5 1720 212 260 152 30 chr3 148886638 148886737 -10713046 - PB1D10 SINE Alu -6 111 1 5 1720 249 33 0 0 chr3 148887994 148888024 -10711759 + (CA)n Simple_repeat Simple_repeat 2 31 0 5 1720 948 55 310 0 chr3 148888283 148888428 -10711355 + B2_Mm1t SINE B2 2 191 -2 5 1720 328 250 38 0 chr3 148889355 148889435 -10710348 + RMER1C Other Other 1248 1330 -12 5 1720 600 252 82 0 chr3 148889700 148889906 -10709877 + MLT1J LTR MaLR 272 494 -18 5 1720 776 276 27 9 chr3 148890657 148890876 -10708907 + ID_B1 SINE B4 1 223 -1 5 1720 1007 90 20 14 chr3 148891142 148891289 -10708494 + B1_Mus1 SINE Alu 1 148 0 5 1720 1109 102 17 0 chr3 148892222 148892398 -10707385 - B2_Mm2 SINE B2 -2 193 15 5 1720 390 132 0 0 chr3 148892527 148892603 -10707180 + (GA)n Simple_repeat Simple_repeat 1 76 0 5 1720 483 300 13 26 chr3 148893654 148893808 -10705975 + B3A SINE B2 5 156 -42 5 1720 699 187 4 16 chr3 148895162 148895418 -10704365 + GA-rich Low_complexity Low_complexity 1 253 0 5 1720 339 267 83 41 chr3 148895439 148895560 -10704223 - RSINE1 SINE B4 -35 130 5 5 1720 22 0 0 0 chr3 148895623 148895645 -10704138 + AT_rich Low_complexity Low_complexity 1 22 0 5 1720 348 309 54 12 chr3 148895672 148895839 -10703944 + Tigger5 DNA MER2_type 2139 2312 -94 5 1720 225 269 0 0 chr3 148896649 148896701 -10703082 - L2a LINE L2 -13 3413 3362 5 1720 972 295 71 12 chr3 148896844 148897180 -10702603 - MLT1A0 LTR MaLR -2 363 8 5 1721 1499 59 11 5 chr3 148897865 148898053 -10701730 - B2_Mm2 SINE B2 -6 189 1 5 1721 745 281 62 37 chr3 148898241 148898514 -10701269 + B4A SINE B4 1 280 -12 5 1721 280 339 15 0 chr3 148898525 148898655 -10701128 + (CA)n Simple_repeat Simple_repeat 2 133 0 5 1721 271 182 0 25 chr3 148898685 148898764 -10701019 + GA-rich Low_complexity Low_complexity 6 82 0 5 1721 476 81 0 13 chr3 148899599 148899674 -10700109 + (TG)n Simple_repeat Simple_repeat 1 74 0 5 1721 524 224 9 0 chr3 148899943 148900059 -10699724 - B3 SINE B2 0 216 100 5 1721 886 184 144 11 chr3 148900098 148900285 -10699498 + ID_B1 SINE B4 3 214 -10 5 1721 191 88 29 0 chr3 148900285 148900319 -10699464 + (TAA)n Simple_repeat Simple_repeat 2 36 0 5 1721 729 150 0 0 chr3 148900385 148900498 -10699285 + B1_Mur4 SINE Alu 1 113 -37 5 1721 186 171 0 0 chr3 148900498 148900539 -10699244 + (CAAA)n Simple_repeat Simple_repeat 3 43 0 5 1721 1175 82 0 0 chr3 148900622 148900769 -10699014 - B1_Mus2 SINE Alu 0 147 1 5 1721 213 65 0 0 chr3 148903746 148903777 -10696006 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 5 1721 742 225 0 0 chr3 148903790 148903928 -10695855 - B1_Mus2 SINE Alu -7 140 3 5 1721 432 237 98 8 chr3 148904067 148904199 -10695584 - B3A SINE B2 -50 148 5 5 1721 201 74 0 0 chr3 148904449 148904476 -10695307 + (TC)n Simple_repeat Simple_repeat 2 28 0 5 1721 441 0 0 0 chr3 148904535 148904584 -10695199 + (TA)n Simple_repeat Simple_repeat 2 50 0 5 1721 228 333 14 0 chr3 148904911 148904983 -10694800 + ID4_ SINE ID 2 74 -9 5 1721 422 316 158 0 chr3 148905037 148905214 -10694569 + ID_B1 SINE B4 10 214 -10 5 1721 534 16 0 0 chr3 148905216 148905279 -10694504 + (GGAAA)n Simple_repeat Simple_repeat 3 65 0 5 1721 231 36 0 0 chr3 148905280 148905308 -10694475 + (CAAAC)n Simple_repeat Simple_repeat 1 28 0 5 1721 2250 37 22 7 chr3 148905651 148905915 -10693868 + L1_Mm LINE L1 5318 5587 -296 5 1721 8120 50 4 1 chr3 148905915 148906907 -10692876 + L1Md_F2 LINE L1 5588 6582 0 5 1721 27 29 0 0 chr3 148907488 148907522 -10692261 + AT_rich Low_complexity Low_complexity 1 34 0 5 1721 356 155 0 0 chr3 148907541 148907599 -10692184 - B2_Mm2 SINE B2 -91 104 47 5 1721 1138 111 6 0 chr3 148907608 148907779 -10692004 - B2_Mm1t SINE B2 -14 179 8 5 1721 302 347 107 0 chr3 148908207 148908432 -10691351 - MER121 Unknown Unknown -106 306 58 5 1721 543 16 0 0 chr3 148909146 148909210 -10690573 + (TC)n Simple_repeat Simple_repeat 1 64 0 6 1721 276 30 0 0 chr3 148909210 148909242 -10690541 + (CA)n Simple_repeat Simple_repeat 1 33 0 6 1721 195 354 12 12 chr3 148909303 148909383 -10690400 + MIRb SINE MIR 119 198 -70 6 1721 24 32 0 0 chr3 148911307 148911338 -10688445 + AT_rich Low_complexity Low_complexity 1 31 0 6 1721 698 175 14 28 chr3 148911362 148911503 -10688280 - B1_Mm SINE Alu -6 141 3 6 1721 228 67 0 0 chr3 148912190 148912220 -10687563 + (TG)n Simple_repeat Simple_repeat 2 31 0 6 1721 702 317 35 28 chr3 148912238 148912527 -10687256 - B4A SINE B4 0 292 2 6 1721 396 0 0 0 chr3 148913679 148913723 -10686060 + (TG)n Simple_repeat Simple_repeat 1 44 0 6 1721 282 87 0 0 chr3 148913725 148913771 -10686012 + (CAGA)n Simple_repeat Simple_repeat 2 47 0 6 1721 703 226 67 6 chr3 148914017 148914182 -10685601 - B3 SINE B2 -32 184 10 6 1721 498 343 102 24 chr3 148914681 148915054 -10684729 + MER45B DNA Tip100 635 1036 -4 6 1721 313 239 0 0 chr3 148915772 148915843 -10683940 - PB1 SINE Alu -22 105 35 6 1721 652 278 69 5 chr3 148916673 148916861 -10682922 - B4A SINE B4 -2 290 91 6 1721 270 95 0 0 chr3 148917117 148917159 -10682624 + (TG)n Simple_repeat Simple_repeat 1 42 0 6 1721 588 95 0 0 chr3 148917159 148917243 -10682540 + (GA)n Simple_repeat Simple_repeat 2 85 0 6 1721 223 136 34 0 chr3 148917247 148917306 -10682477 + (TA)n Simple_repeat Simple_repeat 1 61 0 6 1721 778 222 0 0 chr3 148917322 148917466 -10682317 - B1_Mur2 SINE Alu -5 144 1 6 1721 869 297 40 7 chr3 148917581 148917856 -10681927 - B4A SINE B4 -8 284 1 6 1721 1051 307 57 19 chr3 148917975 148918487 -10681296 - L1MB3 LINE L1 -4 6179 5649 6 1721 378 263 33 58 chr3 148921133 148921254 -10678529 + B1_Mur1 SINE Alu 24 141 -8 6 1721 180 218 35 52 chr3 148923378 148923436 -10676347 - L3 LINE CR1 -4268 221 165 6 1721 609 162 383 0 chr3 148923812 148923966 -10675817 + B3 SINE B2 1 213 -3 6 1721 224 310 29 29 chr3 148924403 148924506 -10675277 + PB1D7 SINE Alu 6 108 -12 6 1721 668 279 21 5 chr3 148925138 148925329 -10674454 - B4 SINE B4 -98 194 1 6 1721 542 140 0 9 chr3 148927079 148927194 -10672589 + (GA)n Simple_repeat Simple_repeat 2 115 0 6 1721 185 0 40 0 chr3 148927205 148927230 -10672553 + (CAGAGA)n Simple_repeat Simple_repeat 3 28 0 6 1721 243 0 0 0 chr3 148927261 148927288 -10672495 + (CAGA)n Simple_repeat Simple_repeat 2 28 0 6 1721 197 185 0 36 chr3 148927766 148927822 -10671961 + CT-rich Low_complexity Low_complexity 4 57 0 6 1721 446 331 6 43 chr3 148928225 148928389 -10671394 + RSINE1 SINE B4 3 160 -5 6 1721 590 283 131 60 chr3 148928818 148929360 -10670423 - L1M4c LINE L1 -4595 1789 1188 6 1721 825 175 7 14 chr3 148929360 148929505 -10670278 - B1_Mur4 SINE Alu -2 148 5 6 1721 590 283 131 60 chr3 148929505 148929649 -10670134 - L1M4c LINE L1 -5197 1187 1054 6 1721 247 318 15 29 chr3 148929651 148929787 -10669996 + CT-rich Low_complexity Low_complexity 4 137 0 6 1721 306 0 0 0 chr3 148929958 148929992 -10669791 + (TG)n Simple_repeat Simple_repeat 1 34 0 6 1721 1916 124 17 20 chr3 148930025 148930379 -10669404 - RLTR44A LTR ERVK 0 405 53 6 1721 606 261 39 93 chr3 148930398 148930656 -10669127 - L1M4c LINE L1 -5625 759 516 6 1721 405 0 0 0 chr3 148930670 148930715 -10669068 + (GA)n Simple_repeat Simple_repeat 1 45 0 6 1721 478 306 13 13 chr3 148931331 148931480 -10668303 + B1F1 SINE Alu 1 149 0 6 1721 329 302 125 24 chr3 148932421 148932669 -10667114 + B4A SINE B4 1 273 -19 6 1721 354 23 0 0 chr3 148932723 148932766 -10667017 + (CA)n Simple_repeat Simple_repeat 1 43 0 6 1721 352 314 37 56 chr3 148933238 148933400 -10666383 - RMER30 DNA MER1_type -32 170 12 6 1721 1360 97 0 25 chr3 148933520 148933720 -10666063 - B2_Mm2 SINE B2 0 195 1 6 1721 1239 48 0 0 chr3 148934049 148934196 -10665587 - B1_Mus2 SINE Alu 0 147 1 6 1721 236 229 0 0 chr3 148934394 148934442 -10665341 - B2_Mm2 SINE B2 -146 49 2 6 1721 307 60 0 39 chr3 148934700 148934752 -10665031 + (TTA)n Simple_repeat Simple_repeat 2 51 0 6 1721 297 263 16 66 chr3 148934773 148934895 -10664888 + PB1 SINE Alu 11 126 -1 6 1721 183 42 0 0 chr3 148935310 148935334 -10664449 + (CA)n Simple_repeat Simple_repeat 2 25 0 6 1721 182 176 0 19 chr3 148936044 148936096 -10663687 + CT-rich Low_complexity Low_complexity 2 52 0 6 1721 297 0 0 0 chr3 148936448 148936481 -10663302 + (TTTA)n Simple_repeat Simple_repeat 1 33 0 6 1721 273 269 0 0 chr3 148936486 148936553 -10663230 - ID4 SINE ID -5 78 12 6 1721 21 36 0 0 chr3 148936857 148936885 -10662898 + AT_rich Low_complexity Low_complexity 1 28 0 6 1721 195 42 0 0 chr3 148937307 148937331 -10662452 + (A)n Simple_repeat Simple_repeat 1 24 0 6 1721 22 0 0 0 chr3 148938095 148938117 -10661666 + AT_rich Low_complexity Low_complexity 1 22 0 6 1721 1201 234 16 131 chr3 148938482 148938910 -10660873 + MTE2a LTR MaLR 1 379 0 6 1721 330 281 10 10 chr3 148939165 148939262 -10660521 + PB1D10 SINE Alu 21 117 0 6 1721 843 64 0 0 chr3 148939321 148939431 -10660352 + (TTCTC)n Simple_repeat Simple_repeat 5 114 0 6 1721 255 31 0 0 chr3 148939476 148939508 -10660275 + (TCTG)n Simple_repeat Simple_repeat 1 32 0 6 1721 883 168 7 0 chr3 148939509 148939652 -10660131 - B1_Mus1 SINE Alu 0 148 5 6 1721 345 96 0 0 chr3 148940521 148940562 -10659221 + (TA)n Simple_repeat Simple_repeat 2 42 0 6 1721 432 55 0 0 chr3 148940562 148940617 -10659166 + (CA)n Simple_repeat Simple_repeat 2 56 0 6 1721 345 96 0 0 chr3 148940617 148940627 -10659156 + (TA)n Simple_repeat Simple_repeat 2 11 0 6 1721 609 247 152 4 chr3 148941683 148941919 -10657864 + Lx9 LINE L1 7350 7620 -24 6 1721 5123 200 50 103 chr3 148941925 148943508 -10656275 + RLTR21 LTR ERVK 7 1459 -113 6 1721 186 43 0 0 chr3 148943553 148943576 -10656207 + (CAA)n Simple_repeat Simple_repeat 2 24 0 6 1721 1024 300 40 20 chr3 148943722 148944076 -10655707 + MTE2b LTR MaLR 7 367 -12 6 1721 450 0 0 0 chr3 148945964 148946014 -10653769 + (TC)n Simple_repeat Simple_repeat 1 50 0 6 1721 216 286 0 0 chr3 148946041 148946104 -10653679 - L2a LINE L2 0 3426 3364 6 1721 1201 279 104 9 chr3 148947396 148947859 -10651924 + L1_Mur3 LINE L1 3514 4020 -1860 6 1721 253 312 9 18 chr3 148947862 148947976 -10651807 - MER33 DNA MER1_type -105 219 107 6 1721 22 0 0 0 chr3 148948807 148948829 -10650954 + AT_rich Low_complexity Low_complexity 1 22 0 6 1721 414 0 0 0 chr3 148949595 148949641 -10650142 + (TG)n Simple_repeat Simple_repeat 2 47 0 6 1721 1980 163 202 22 chr3 148950052 148950498 -10649285 + RLTR24 LTR ERV1 2 527 -2 6 1721 250 339 71 9 chr3 148950673 148950786 -10648997 - MIRb SINE MIR -121 147 28 6 1721 4530 100 9 8 chr3 148951313 148951950 -10647833 + Lx2 LINE L1 6348 6985 -12 6 1721 435 38 0 0 chr3 148952455 148952508 -10647275 + (TG)n Simple_repeat Simple_repeat 2 54 0 6 1721 491 370 70 58 chr3 148952530 148952788 -10646995 - B4A SINE B4 0 292 32 6 1721 364 264 23 76 chr3 148954118 148954249 -10645534 - B1F1 SINE Alu -5 144 21 6 1721 189 0 0 0 chr3 148954317 148954338 -10645445 + (TTTTA)n Simple_repeat Simple_repeat 2 22 0 6 1721 273 75 0 0 chr3 148955135 148955175 -10644608 + (TTTA)n Simple_repeat Simple_repeat 3 42 0 6 1721 224 104 0 40 chr3 148955185 148955235 -10644548 + (TTTTG)n Simple_repeat Simple_repeat 3 50 0 6 1721 21 0 0 0 chr3 148955397 148955418 -10644365 + AT_rich Low_complexity Low_complexity 1 21 0 6 1721 21 0 0 0 chr3 148955902 148955923 -10643860 + AT_rich Low_complexity Low_complexity 1 21 0 6 1721 26 30 0 0 chr3 148956255 148956288 -10643495 + AT_rich Low_complexity Low_complexity 1 33 0 6 1721 594 0 0 0 chr3 148956734 148956800 -10642983 + (TCTA)n Simple_repeat Simple_repeat 3 68 0 6 1721 225 0 0 0 chr3 148958888 148958913 -10640870 + (C)n Simple_repeat Simple_repeat 1 25 0 6 1721 186 224 0 0 chr3 148960229 148960278 -10639505 + CT-rich Low_complexity Low_complexity 3 51 0 6 1721 645 304 28 62 chr3 148960725 148961016 -10638767 - B4 SINE B4 -11 281 1 6 1721 232 49 73 0 chr3 148961687 148961728 -10638055 + (TTTG)n Simple_repeat Simple_repeat 2 45 0 6 1721 22 35 0 0 chr3 148961810 148961839 -10637944 + AT_rich Low_complexity Low_complexity 1 29 0 6 1721 418 324 76 0 chr3 148961999 148962144 -10637639 + B4A SINE B4 24 179 -113 6 1721 387 0 0 0 chr3 148962172 148962215 -10637568 + (CA)n Simple_repeat Simple_repeat 2 44 0 6 1721 1362 313 85 34 chr3 148962306 148963018 -10636765 + L1MB1 LINE L1 5360 6115 -53 6 1721 401 0 0 20 chr3 148963018 148963068 -10636715 + (TTTTA)n Simple_repeat Simple_repeat 4 52 0 6 1721 576 311 24 0 chr3 148963069 148963275 -10636508 - ID_B1 SINE B4 -13 211 1 6 1721 1362 313 85 34 chr3 148963275 148963328 -10636455 + L1MB1 LINE L1 6116 6165 -3 6 1721 324 0 0 0 chr3 148963337 148963373 -10636410 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 6 1721 339 264 38 15 chr3 148964275 148964406 -10635377 + ID_B1 SINE B4 23 156 -68 6 1721 839 200 0 0 chr3 148964406 148964556 -10635227 + B1_Mur4 SINE Alu 1 150 0 6 1721 237 108 0 0 chr3 148964568 148964605 -10635178 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 6 1721 278 229 33 0 chr3 148964605 148964666 -10635117 + ID_B1 SINE B4 149 211 -13 6 1721 1124 80 7 0 chr3 148964668 148965135 -10634648 + (CATA)n Simple_repeat Simple_repeat 1 470 0 6 1721 1131 84 0 0 chr3 148965149 148965327 -10634456 + (CATA)n Simple_repeat Simple_repeat 2 179 0 6 1721 341 333 16 32 chr3 148965476 148965600 -10634183 - RSINE1 SINE B4 -3 162 41 6 1721 462 206 56 9 chr3 148965641 148965749 -10634034 - B3 SINE B2 -102 114 2 6 1721 341 232 24 0 chr3 148965773 148965855 -10633928 - B4A SINE B4 -207 85 2 6 1721 2125 227 45 17 chr3 148965896 148966366 -10633417 + Lx6 LINE L1 6976 7458 -2 7 1721 496 271 0 8 chr3 148966452 148966575 -10633208 + ID_B1 SINE B4 93 214 -10 7 1721 859 237 76 0 chr3 148967840 148968038 -10631745 - B3 SINE B2 0 216 4 7 1721 210 103 0 49 chr3 148969121 148969162 -10630621 + T-rich Low_complexity Low_complexity 3 41 0 7 1721 217 300 0 91 chr3 148969217 148969294 -10630489 + ID4 SINE ID 3 72 -11 7 1721 535 275 0 0 chr3 148969330 148969450 -10630333 + PB1D7 SINE Alu 1 120 0 7 1721 234 0 0 0 chr3 148969540 148969566 -10630217 + (A)n Simple_repeat Simple_repeat 1 26 0 7 1721 204 73 23 68 chr3 148970413 148970437 -10629346 + (TG)n Simple_repeat Simple_repeat 1 23 0 7 1721 741 93 0 0 chr3 148970437 148970544 -10629239 + (TCTCCC)n Simple_repeat Simple_repeat 3 109 0 7 1721 204 73 23 68 chr3 148970544 148970563 -10629220 + (TG)n Simple_repeat Simple_repeat 2 20 0 7 1721 215 311 16 0 chr3 148970567 148970628 -10629155 - ID4_ SINE ID -4 79 18 7 1721 477 0 0 0 chr3 148971117 148971170 -10628613 + (CA)n Simple_repeat Simple_repeat 1 53 0 7 1721 190 327 93 37 chr3 148971695 148971857 -10627926 + MIRb SINE MIR 25 195 -73 7 1721 264 314 182 22 chr3 148972060 148972197 -10627586 - RSINE1 SINE B4 -2 163 5 7 1721 244 255 0 0 chr3 148972219 148972270 -10627513 + (TCTA)n Simple_repeat Simple_repeat 2 52 0 7 1721 417 39 0 0 chr3 148972270 148972321 -10627462 + (TTA)n Simple_repeat Simple_repeat 1 51 0 7 1721 561 284 16 57 chr3 148972428 148972622 -10627161 + B3A SINE B2 2 187 -11 7 1721 363 311 88 25 chr3 148972638 148972955 -10626828 - L1MA5 LINE L1 -32 6268 5932 7 1721 395 277 37 30 chr3 148973010 148973144 -10626639 - B1F SINE Alu -1 148 14 7 1721 334 328 104 107 chr3 148973512 148973850 -10625933 - ORR1E LTR MaLR -22 337 1 7 1721 649 226 124 21 chr3 148974209 148974403 -10625380 + B3 SINE B2 3 216 0 7 1721 920 296 48 45 chr3 148974589 148974967 -10624816 + MTE2a LTR MaLR 1 379 0 7 1721 246 310 11 22 chr3 148978850 148978896 -10620887 + polypyrimidine Low_complexity Low_complexity 44 89 0 7 1721 286 316 17 9 chr3 148978896 148979011 -10620772 - PB1D10 SINE Alu -1 116 1 7 1721 246 310 11 22 chr3 148979011 148979053 -10620730 + polypyrimidine Low_complexity Low_complexity 2 43 0 7 1721 21 0 0 0 chr3 148979484 148979505 -10620278 + AT_rich Low_complexity Low_complexity 1 21 0 7 1721 225 328 0 0 chr3 148979506 148979573 -10620210 - ID2 SINE ID -4 79 13 7 1721 679 293 5 11 chr3 148979849 148980039 -10619744 + ID_B1 SINE B4 1 189 -35 7 1721 297 304 17 43 chr3 148979935 148980052 -10619731 + B1_Mus2 SINE Alu 7 120 -27 7 1721 464 222 11 11 chr3 148980158 148980249 -10619534 - PB1 SINE Alu -36 91 1 7 1721 269 331 56 25 chr3 148980249 148980316 -10619467 - B4 SINE B4 -112 177 15 7 1721 1159 58 0 0 chr3 148980375 148980512 -10619271 + B1_Mus1 SINE Alu 2 138 -10 7 1721 188 0 74 0 chr3 148980512 148980539 -10619244 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 7 1721 291 224 26 26 chr3 148982355 148982433 -10617350 - ID4_ SINE ID -4 79 2 7 1721 1987 172 53 20 chr3 148982746 148983144 -10616639 - MTC LTR MaLR -6 415 5 7 1721 976 272 52 71 chr3 148983153 148983250 -10616533 - RCHARR1 DNA MER1_type 0 974 884 7 1721 235 303 26 13 chr3 148983250 148983327 -10616456 + ID4_ SINE ID 5 82 -1 7 1721 976 272 52 71 chr3 148983327 148983638 -10616145 - RCHARR1 DNA MER1_type -91 883 574 7 1721 655 302 88 69 chr3 148983638 148984090 -10615693 + MT2A LTR ERVL 1 461 -72 7 1721 198 184 48 0 chr3 148984127 148984252 -10615531 + (TA)n Simple_repeat Simple_repeat 1 131 0 7 1721 1880 182 5 67 chr3 148984299 148984687 -10615096 - MTC LTR MaLR -55 366 3 7 1721 519 257 112 21 chr3 148984691 148984878 -10614905 - RCHARR1 DNA MER1_type -686 288 85 7 1721 249 225 14 27 chr3 148985308 148985381 -10614402 - MTD LTR MaLR 0 379 308 7 1721 466 281 42 24 chr3 148985414 148985582 -10614201 - MTD LTR MaLR -241 178 8 7 1721 1125 249 59 42 chr3 148985602 148985959 -10613824 - ORR1D1 LTR MaLR -11 363 1 7 1721 279 260 45 32 chr3 148986138 148986293 -10613490 - MER63D DNA AcHobo -852 209 53 7 1721 964 99 0 14 chr3 148986514 148986658 -10613125 + B1_Mus2 SINE Alu 6 147 0 7 1721 194 81 27 0 chr3 148986658 148986695 -10613088 + (CAAAC)n Simple_repeat Simple_repeat 1 38 0 7 1721 351 0 0 0 chr3 148987382 148987421 -10612362 + (TC)n Simple_repeat Simple_repeat 2 40 0 7 1721 387 0 0 0 chr3 148987421 148987463 -10612320 + (TG)n Simple_repeat Simple_repeat 2 44 0 7 1721 207 0 0 0 chr3 148988891 148988914 -10610869 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 7 1721 2031 252 62 15 chr3 148989067 148989590 -10610193 + Lx6 LINE L1 6556 7460 0 7 1721 189 0 0 0 chr3 148989637 148989658 -10610125 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 7 1721 1001 60 27 0 chr3 148990144 148990294 -10609489 + (GA)n Simple_repeat Simple_repeat 1 154 0 7 1721 1188 79 0 0 chr3 148990294 148990472 -10609311 + (GGGAGA)n Simple_repeat Simple_repeat 1 178 0 7 1721 1290 56 0 0 chr3 148990510 148990690 -10609093 + (GGGAGA)n Simple_repeat Simple_repeat 1 180 0 7 1721 192 77 0 0 chr3 148990847 148990873 -10608910 + (T)n Simple_repeat Simple_repeat 1 26 0 7 1721 312 48 0 0 chr3 148990933 148990975 -10608808 + (CCA)n Simple_repeat Simple_repeat 2 43 0 7 1721 277 261 0 68 chr3 148991445 148991519 -10608264 + ID4 SINE ID 15 83 0 7 1721 307 324 0 45 chr3 148991611 148991721 -10608062 - PB1D10 SINE Alu -12 105 1 7 1721 186 43 0 0 chr3 148991909 148991932 -10607851 + (TG)n Simple_repeat Simple_repeat 1 23 0 7 1721 204 40 0 0 chr3 148991995 148992020 -10607763 + (CA)n Simple_repeat Simple_repeat 2 26 0 7 1721 522 275 188 12 chr3 148992444 148992768 -10607015 - RMER5 LTR ERV1 -11 523 143 7 1721 651 11 34 0 chr3 148995435 148995523 -10604260 + (TC)n Simple_repeat Simple_repeat 2 92 0 7 1721 266 180 16 0 chr3 148995527 148995588 -10604195 + CT-rich Low_complexity Low_complexity 3 64 0 7 1721 211 312 26 0 chr3 148996438 148996515 -10603268 + CT-rich Low_complexity Low_complexity 4 82 0 7 1721 327 283 163 22 chr3 148996530 148996714 -10603069 - ID_B1 SINE B4 -14 210 1 7 1721 683 253 145 0 chr3 148996968 148997154 -10602629 - B3 SINE B2 -2 214 2 7 1721 198 143 0 0 chr3 148997194 148997229 -10602554 + (TA)n Simple_repeat Simple_repeat 1 35 0 7 1721 486 0 0 0 chr3 148997229 148997283 -10602500 + (TCTA)n Simple_repeat Simple_repeat 1 54 0 7 1721 233 294 123 71 chr3 148998102 148998256 -10601527 - LTR48 LTR ERV1 -625 162 1 7 1721 26 0 0 0 chr3 148998583 148998609 -10601174 + AT_rich Low_complexity Low_complexity 1 26 0 7 1721 294 159 0 0 chr3 148998620 148998689 -10601094 + CT-rich Low_complexity Low_complexity 1 69 0 7 1721 264 91 0 0 chr3 148998696 148998740 -10601043 + (TG)n Simple_repeat Simple_repeat 1 44 0 7 1721 436 369 0 7 chr3 148998741 148998891 -10600892 - RSINE1 SINE B4 -14 151 3 7 1721 377 319 112 0 chr3 148998893 148999009 -10600774 - ID_B1 SINE B4 0 224 96 7 1721 511 117 21 0 chr3 149000256 149000350 -10599433 + (TC)n Simple_repeat Simple_repeat 1 96 0 1 1721 1319 69 26 21 chr3 149000387 149000580 -10599203 + B2_Mm2 SINE B2 1 194 -1 2 1721 370 339 15 8 chr3 149000818 149000949 -10598834 + RSINE1 SINE B4 3 134 -31 3 1721 924 77 0 0 chr3 149000958 149001088 -10598695 + (CA)n Simple_repeat Simple_repeat 2 131 0 4 1721 261 83 0 0 chr3 149001101 149001137 -10598646 + (TGAA)n Simple_repeat Simple_repeat 2 37 0 5 1721 269 247 39 0 chr3 149001156 149001233 -10598550 + ID4 SINE ID 3 82 -1 6 1721 639 0 0 0 chr3 149002993 149003064 -10596719 + (GAA)n Simple_repeat Simple_repeat 1 71 0 7 1721 587 201 37 15 chr3 149003529 149003665 -10596118 - B1_Mus1 SINE Alu 0 148 10 8 1721 475 218 10 0 chr3 149003871 149003972 -10595811 - U6 snRNA snRNA -5 102 1 9 1721 192 200 12 24 chr3 149004316 149004398 -10595385 + (TG)n Simple_repeat Simple_repeat 1 81 0 1 1721 371 201 5 48 chr3 149004415 149004603 -10595180 + (TG)n Simple_repeat Simple_repeat 1 180 0 1 1721 747 278 41 5 chr3 149006072 149006267 -10593516 + ID_B1 SINE B4 16 217 -7 1 1721 672 93 0 0 chr3 149006289 149006386 -10593397 + (CA)n Simple_repeat Simple_repeat 2 98 0 1 1721 21 71 0 0 chr3 149006549 149006591 -10593192 + AT_rich Low_complexity Low_complexity 1 42 0 1 1721 243 0 0 0 chr3 149006716 149006743 -10593040 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 1721 39 60 0 0 chr3 149006907 149006974 -10592809 + AT_rich Low_complexity Low_complexity 1 67 0 1 1721 257 365 0 28 chr3 149007100 149007207 -10592576 - ID_B1 SINE B4 -3 221 118 1 1721 619 255 0 0 chr3 149007374 149007515 -10592268 + ID_B1 SINE B4 83 223 -1 1 1721 436 164 65 19 chr3 149008810 149008965 -10590818 + CT-rich Low_complexity Low_complexity 6 167 0 1 1721 442 321 0 0 chr3 149008970 149009110 -10590673 - B1F1 SINE Alu -6 143 4 1 1721 385 101 52 45 chr3 149009676 149009831 -10589952 + A-rich Low_complexity Low_complexity 5 160 0 2 1721 410 299 7 69 chr3 149013320 149013464 -10586319 + ID_B1 SINE B4 78 212 -12 2 1721 321 217 0 0 chr3 149013479 149013562 -10586221 + (TA)n Simple_repeat Simple_repeat 1 83 0 2 1721 264 214 61 0 chr3 149013592 149013690 -10586093 + (TA)n Simple_repeat Simple_repeat 2 105 0 2 1721 1305 109 3 0 chr3 149013972 149014266 -10585517 + (TG)n Simple_repeat Simple_repeat 1 294 0 2 1721 253 279 12 48 chr3 149014728 149014811 -10584972 - ID4 SINE ID -2 81 2 2 1721 431 298 112 43 chr3 149016266 149016543 -10583240 + MTEa LTR MaLR 74 369 -10 2 1721 328 184 19 32 chr3 149017321 149017478 -10582305 + (TA)n Simple_repeat Simple_repeat 2 156 0 2 1721 285 90 14 29 chr3 149017628 149017697 -10582086 + (CAAA)n Simple_repeat Simple_repeat 2 69 0 2 1721 21 0 0 0 chr3 149017979 149018000 -10581783 + AT_rich Low_complexity Low_complexity 1 21 0 2 1721 202 114 29 0 chr3 149019287 149019322 -10580461 + (GAAAA)n Simple_repeat Simple_repeat 4 39 0 2 1721 1790 184 69 51 chr3 149019354 149019788 -10579995 - RMER10A LTR ERVL 0 442 1 3 1721 222 214 42 14 chr3 149019893 149019964 -10579819 + GA-rich Low_complexity Low_complexity 2 74 0 3 1721 261 0 0 0 chr3 149020517 149020546 -10579237 + (TC)n Simple_repeat Simple_repeat 1 29 0 3 1721 401 258 0 11 chr3 149022504 149022598 -10577185 + RSINE1 SINE B4 3 95 -70 3 1721 444 86 0 0 chr3 149022598 149022668 -10577115 + (GA)n Simple_repeat Simple_repeat 1 70 0 3 1721 1222 48 0 0 chr3 149023020 149023166 -10576617 + B1_Mus2 SINE Alu 2 147 0 3 1721 234 180 0 0 chr3 149023170 149023220 -10576563 + A-rich Low_complexity Low_complexity 1 50 0 3 1721 198 248 234 19 chr3 149024801 149024908 -10574875 + MIRm SINE MIR 18 147 -121 3 1721 421 295 54 40 chr3 149024913 149025064 -10574719 + ID_B1 SINE B4 66 215 -9 3 1721 472 252 32 16 chr3 149025388 149025513 -10574270 + RSINE1 SINE B4 3 129 -36 3 1721 868 52 44 0 chr3 149025532 149025667 -10574116 + (CCCCAG)n Simple_repeat Simple_repeat 3 143 0 4 1721 598 237 15 0 chr3 149026339 149026470 -10573313 + RSINE1 SINE B4 4 136 -29 4 1721 228 35 0 0 chr3 149028299 149028328 -10571455 + (TCTG)n Simple_repeat Simple_repeat 4 32 0 4 1721 387 0 0 0 chr3 149028353 149028396 -10571387 + (CA)n Simple_repeat Simple_repeat 1 43 0 4 1722 22 0 0 0 chr3 149029107 149029129 -10570654 + AT_rich Low_complexity Low_complexity 1 22 0 4 1722 456 19 0 0 chr3 149029596 149029649 -10570134 + (TTTTG)n Simple_repeat Simple_repeat 2 54 0 4 1722 729 146 0 0 chr3 149029891 149030028 -10569755 + (TG)n Simple_repeat Simple_repeat 1 137 0 4 1722 288 248 108 57 chr3 149030030 149030188 -10569595 - B3A SINE B2 -13 203 38 4 1722 449 329 32 28 chr3 149030780 149030996 -10568787 - ID_B1 SINE B4 -6 218 2 4 1722 792 172 0 0 chr3 149031493 149031627 -10568156 + B1_Mus1 SINE Alu 4 137 -11 4 1722 777 22 0 0 chr3 149031650 149031741 -10568042 + (GAAAA)n Simple_repeat Simple_repeat 2 92 0 5 1722 242 324 62 31 chr3 149034440 149034634 -10565149 + L1MEg LINE L1 1009 1208 -4876 5 1722 260 279 0 0 chr3 149035084 149035152 -10564631 - tRNA-Ala-GCA tRNA tRNA -7 68 1 5 1722 255 267 17 0 chr3 149035491 149035551 -10564232 + CT-rich Low_complexity Low_complexity 3 63 0 5 1722 1050 80 0 33 chr3 149035551 149035733 -10564050 + (TTCC)n Simple_repeat Simple_repeat 3 178 0 5 1722 468 344 122 16 chr3 149035771 149036025 -10563758 - B4A SINE B4 0 292 12 5 1722 228 261 14 14 chr3 149035966 149036036 -10563747 - B2_Mm1t SINE B2 -123 70 1 5 1722 615 39 0 0 chr3 149036428 149036506 -10563277 + (CA)n Simple_repeat Simple_repeat 2 79 0 5 1722 383 281 99 43 chr3 149038568 149038709 -10561074 - RSINE1 SINE B4 -13 152 4 5 1722 311 286 117 36 chr3 149038952 149039148 -10560635 - L1M5 LINE L1 -524 5600 5389 5 1722 403 311 16 0 chr3 149040171 149040293 -10559490 + B1F2 SINE Alu 19 142 -7 6 1722 497 147 11 0 chr3 149042258 149042353 -10557430 + GA-rich Low_complexity Low_complexity 3 98 0 6 1722 451 318 68 86 chr3 149042592 149042826 -10556957 + B4A SINE B4 32 261 -31 6 1722 237 262 24 12 chr3 149043008 149043093 -10556690 + L1M5 LINE L1 5345 5430 -764 6 1722 21 0 0 0 chr3 149043413 149043434 -10556349 + AT_rich Low_complexity Low_complexity 1 21 0 6 1722 181 343 58 35 chr3 149043727 149043899 -10555884 - MIRb SINE MIR -29 239 64 6 1722 233 29 0 29 chr3 149043941 149043976 -10555807 + (TG)n Simple_repeat Simple_repeat 2 35 0 6 1722 415 312 86 59 chr3 149043981 149044168 -10555615 - B3A SINE B2 -3 192 1 6 1722 23 68 0 0 chr3 149045756 149045800 -10553983 + AT_rich Low_complexity Low_complexity 1 44 0 6 1722 540 233 36 58 chr3 149045848 149046029 -10553754 - B3A SINE B2 -1 194 34 6 1722 216 0 0 0 chr3 149047356 149047380 -10552403 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 7 1722 213 355 21 0 chr3 149047850 149047943 -10551840 + ID_B1 SINE B4 92 186 -38 7 1722 270 0 0 0 chr3 149050198 149050228 -10549555 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 7 1722 711 211 0 0 chr3 149050912 149051068 -10548715 + CT-rich Low_complexity Low_complexity 2 157 0 7 1722 625 129 250 0 chr3 149051090 149051206 -10548577 - B1_Mur4 SINE Alu -5 145 1 7 1722 650 201 110 0 chr3 149051826 149051990 -10547793 - B3 SINE B2 -7 209 28 7 1722 373 252 122 0 chr3 149052001 149052124 -10547659 - B1_Mur2 SINE Alu -5 144 7 7 1722 260 83 21 0 chr3 149052478 149052526 -10547257 + (TC)n Simple_repeat Simple_repeat 1 49 0 7 1722 903 79 0 58 chr3 149052621 149052809 -10546974 + (CA)n Simple_repeat Simple_repeat 2 178 0 7 1722 705 56 0 0 chr3 149053614 149053704 -10546079 + (TCCC)n Simple_repeat Simple_repeat 4 93 0 7 1722 965 122 0 7 chr3 149053708 149053856 -10545927 - B1_Mus2 SINE Alu 0 147 1 8 1722 471 123 0 0 chr3 149053967 149054048 -10545735 + (TCTCTG)n Simple_repeat Simple_repeat 4 84 0 8 1722 269 280 85 11 chr3 149054109 149054203 -10545580 - RSINE1 SINE B4 -62 103 3 8 1722 37 39 0 0 chr3 149054576 149054627 -10545156 + AT_rich Low_complexity Low_complexity 1 51 0 8 1722 302 0 26 0 chr3 149055987 149056025 -10543758 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 8 1722 346 243 0 0 chr3 149056071 149056141 -10543642 + ID4_ SINE ID 5 74 -9 8 1722 477 250 16 0 chr3 149056372 149056500 -10543283 - RSINE1 SINE B4 -35 130 1 8 1722 200 94 0 30 chr3 149056725 149056758 -10543025 + (TC)n Simple_repeat Simple_repeat 1 32 0 8 1722 225 167 0 0 chr3 149056778 149056832 -10542951 + T-rich Low_complexity Low_complexity 1 54 0 8 1722 423 56 0 0 chr3 149056840 149056894 -10542889 + (TG)n Simple_repeat Simple_repeat 2 55 0 8 1722 357 109 0 0 chr3 149057046 149057110 -10542673 + (GA)n Simple_repeat Simple_repeat 1 64 0 9 1722 199 169 46 0 chr3 149058405 149058470 -10541313 + A-rich Low_complexity Low_complexity 3 70 0 9 1722 180 294 0 0 chr3 149059255 149059323 -10540460 + (TCCA)n Simple_repeat Simple_repeat 1 68 0 9 1722 472 128 353 0 chr3 149060229 149060331 -10539452 + B1_Mur3 SINE Alu 5 142 -7 9 1722 207 0 0 0 chr3 149060334 149060357 -10539426 + (CCAA)n Simple_repeat Simple_repeat 2 24 0 9 1722 296 287 21 0 chr3 149061024 149061118 -10538665 - L2 LINE L2 -962 2457 2362 9 1722 204 288 15 0 chr3 149062509 149062522 -10537261 + (TATATG)n Simple_repeat Simple_repeat 6 18 0 9 1722 333 0 0 0 chr3 149062522 149062559 -10537224 + (CA)n Simple_repeat Simple_repeat 2 38 0 9 1722 204 288 15 0 chr3 149062559 149062611 -10537172 + (TATATG)n Simple_repeat Simple_repeat 1 53 0 9 1722 372 342 17 75 chr3 149062614 149062788 -10536995 - RSINE1 SINE B4 0 165 2 9 1722 191 310 35 35 chr3 149063811 149063898 -10535885 - MIR SINE MIR -108 154 68 1 1722 219 36 0 0 chr3 149065920 149065948 -10533835 + (TG)n Simple_repeat Simple_repeat 2 29 0 1 1722 374 282 45 0 chr3 149066791 149066901 -10532882 - ID_B1 SINE B4 0 224 110 1 1722 322 277 72 65 chr3 149067418 149067557 -10532226 + ID_B1 SINE B4 77 216 -8 1 1722 537 147 0 0 chr3 149067557 149067652 -10532131 + (CAAAC)n Simple_repeat Simple_repeat 5 99 0 1 1722 414 0 0 0 chr3 149070060 149070106 -10529677 + (CA)n Simple_repeat Simple_repeat 2 47 0 1 1722 378 258 0 0 chr3 149071004 149071136 -10528647 + (TG)n Simple_repeat Simple_repeat 1 132 0 1 1722 375 23 0 0 chr3 149071646 149071690 -10528093 + (TG)n Simple_repeat Simple_repeat 1 44 0 1 1722 225 317 152 17 chr3 149071892 149072123 -10527660 - Charlie14a DNA MER1_type -483 681 420 1 1722 27 0 0 0 chr3 149073012 149073039 -10526744 + AT_rich Low_complexity Low_complexity 1 27 0 1 1722 568 275 0 42 chr3 149073042 149073186 -10526597 + B1_Mur1 SINE Alu 11 148 -1 1 1722 797 301 23 69 chr3 149074213 149074516 -10525267 - B4 SINE B4 -2 290 2 1 1722 362 372 29 29 chr3 149075629 149075875 -10523908 + B4A SINE B4 1 246 -46 1 1722 490 179 24 6 chr3 149075942 149076111 -10523672 + (CA)n Simple_repeat Simple_repeat 1 172 0 1 1722 207 0 0 0 chr3 149078364 149078387 -10521396 + (TTGG)n Simple_repeat Simple_repeat 2 24 0 1 1722 1097 169 90 19 chr3 149078697 149078908 -10520875 - URR1A DNA MER1_type 0 226 1 1 1722 189 0 0 0 chr3 149078941 149078962 -10520821 + (GA)n Simple_repeat Simple_repeat 1 21 0 1 1722 446 33 17 0 chr3 149079852 149079912 -10519871 + (TG)n Simple_repeat Simple_repeat 1 61 0 1 1722 275 239 15 0 chr3 149080387 149080454 -10519329 - Charlie26a DNA MER1_type 0 325 258 1 1722 21 0 0 0 chr3 149080559 149080580 -10519203 + AT_rich Low_complexity Low_complexity 1 21 0 1 1722 257 225 48 36 chr3 149080999 149081082 -10518701 - MLT1A1 LTR MaLR -73 335 252 1 1722 411 255 24 47 chr3 149081567 149081582 -10518201 + CYRA11_Mm Unknown Y-chromosome 158 243 -374 1 1722 796 161 0 0 chr3 149081582 149081725 -10518058 - URR1B DNA MER1_type 0 225 83 1 1722 411 255 24 47 chr3 149081725 149081736 -10518047 + CYRA11_Mm Unknown Y-chromosome 244 322 -295 1 1722 341 302 61 109 chr3 149081827 149082057 -10517726 - ORR1E LTR MaLR -122 237 19 1 1722 1768 303 104 59 chr3 149082027 149082944 -10516839 - ORR1E-int LTR MaLR -21 1559 507 1 1722 808 262 19 5 chr3 149084782 149084993 -10514790 + ID_B1 SINE B4 1 214 -10 1 1722 233 233 68 0 chr3 149086358 149086431 -10513352 - L2a LINE L2 -3 3423 3346 1 1722 844 263 14 5 chr3 149086843 149087057 -10512726 + B3 SINE B2 1 216 0 1 1722 180 0 0 0 chr3 149087326 149087346 -10512437 + (T)n Simple_repeat Simple_repeat 1 20 0 1 1722 283 179 18 0 chr3 149087948 149088004 -10511779 + B1_Mus1 SINE Alu 2 58 -90 1 1722 232 287 29 38 chr3 149088218 149088323 -10511460 + MLT1A1 LTR MaLR 301 404 -4 1 1722 270 0 0 0 chr3 149089948 149089978 -10509805 + (TTTTA)n Simple_repeat Simple_repeat 1 30 0 1 1722 237 33 0 0 chr3 149090887 149090917 -10508866 + (TGG)n Simple_repeat Simple_repeat 3 32 0 1 1722 459 0 0 0 chr3 149091057 149091108 -10508675 + (CCA)n Simple_repeat Simple_repeat 3 53 0 1 1722 438 289 9 0 chr3 149091286 149091400 -10508383 + RSINE1 SINE B4 12 126 -39 1 1722 324 70 0 0 chr3 149091431 149091474 -10508309 + (CAAAAA)n Simple_repeat Simple_repeat 2 44 0 1 1722 890 165 185 5 chr3 149091539 149091728 -10508055 + URR1A DNA MER1_type 2 224 -2 1 1722 276 211 63 38 chr3 149091746 149091825 -10507958 + PB1D10 SINE Alu 3 83 -34 1 1722 337 292 0 32 chr3 149092119 149092243 -10507540 + CT-rich Low_complexity Low_complexity 3 122 0 1 1722 186 26 24 73 chr3 149092314 149092355 -10507428 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 1 1722 22 35 0 0 chr3 149094450 149094479 -10505304 + AT_rich Low_complexity Low_complexity 1 29 0 1 1722 544 307 14 0 chr3 149095260 149095400 -10504383 - RSINE1 SINE B4 -23 142 1 1 1722 26 64 0 0 chr3 149096088 149096135 -10503648 + AT_rich Low_complexity Low_complexity 1 47 0 1 1722 384 311 5 58 chr3 149097088 149097279 -10502504 + B3A SINE B2 2 182 -16 1 1722 519 17 0 0 chr3 149097467 149097527 -10502256 + (TC)n Simple_repeat Simple_repeat 1 60 0 1 1722 180 0 0 0 chr3 149098880 149098900 -10500883 + (T)n Simple_repeat Simple_repeat 1 20 0 1 1722 336 83 0 0 chr3 149099972 149100020 -10499763 + (CA)n Simple_repeat Simple_repeat 1 48 0 1 1722 716 246 25 3 chr3 149101062 149101254 -10498529 + B3 SINE B2 5 197 -1 1 1722 321 326 45 23 chr3 149105165 149105297 -10494486 + MIRb SINE MIR 58 192 -76 1 1722 396 0 0 0 chr3 149108355 149108399 -10491384 + (GA)n Simple_repeat Simple_repeat 1 44 0 1 1722 306 132 0 0 chr3 149109397 149109450 -10490333 + (CTG)n Simple_repeat Simple_repeat 2 54 0 1 1722 401 333 86 43 chr3 149111064 149111227 -10488556 - B4 SINE B4 -5 287 118 1 1722 973 158 0 13 chr3 149112074 149112308 -10487475 + GA-rich Low_complexity Low_complexity 1 230 0 1 1722 667 301 31 0 chr3 149113324 149113487 -10486296 + B3 SINE B2 1 168 -48 1 1722 230 116 23 0 chr3 149114963 149115006 -10484777 + (TTCA)n Simple_repeat Simple_repeat 2 45 0 1 1722 349 333 8 86 chr3 149115044 149115172 -10484611 - PB1 SINE Alu -7 120 3 1 1722 490 354 43 17 chr3 149115356 149115586 -10484197 - ORR1E LTR MaLR -120 239 4 1 1722 469 352 66 38 chr3 149115685 149116155 -10483628 + L2a LINE L2 2921 3403 -23 1 1722 210 366 144 0 chr3 149118141 149118343 -10481440 - L2 LINE L2 -353 3066 2836 1 1722 404 317 148 11 chr3 149118549 149118731 -10481052 + ID_B1 SINE B4 12 218 -6 1 1722 306 264 23 62 chr3 149120312 149120441 -10479342 - MER102c DNA MER1_type -3 328 205 1 1722 267 327 44 44 chr3 149120481 149120641 -10479142 + L2a LINE L2 2795 2954 -465 1 1722 206 362 43 0 chr3 149120686 149120780 -10479003 + L2a LINE L2 3045 3142 -284 1 1722 228 257 0 0 chr3 149123119 149123189 -10476594 + (TG)n Simple_repeat Simple_repeat 2 71 0 1 1722 351 115 0 0 chr3 149123279 149123331 -10476452 + (TCCCC)n Simple_repeat Simple_repeat 4 55 0 1 1722 513 154 27 0 chr3 149123332 149123442 -10476341 + CT-rich Low_complexity Low_complexity 2 114 0 1 1722 246 283 17 0 chr3 149123442 149123502 -10476281 - B4 SINE B4 -67 225 165 1 1722 497 305 86 86 chr3 149124182 149124541 -10475242 - ORR1E LTR MaLR 0 359 1 1 1722 27 0 0 0 chr3 149126089 149126116 -10473667 + AT_rich Low_complexity Low_complexity 1 27 0 1 1722 793 214 13 193 chr3 149127078 149127316 -10472467 - B3A SINE B2 0 195 1 1 1722 270 106 0 0 chr3 149127336 149127383 -10472400 + (TG)n Simple_repeat Simple_repeat 1 47 0 1 1722 1115 234 153 51 chr3 149127578 149127912 -10471871 + ORR1D2 LTR MaLR 3 370 0 1 1722 2998 113 0 14 chr3 149127932 149128371 -10471412 + RLTR10C LTR ERVK 1 433 -3 1 1722 234 0 0 0 chr3 149128724 149128750 -10471033 + (TCCC)n Simple_repeat Simple_repeat 1 26 0 1 1722 486 0 0 0 chr3 149128750 149128804 -10470979 + (TTTC)n Simple_repeat Simple_repeat 1 54 0 1 1722 969 217 39 24 chr3 149129054 149129262 -10470521 + B3 SINE B2 6 216 0 1 1722 532 271 118 0 chr3 149129297 149129500 -10470283 - Lx8 LINE L1 -236 7237 7011 1 1722 317 288 12 50 chr3 149129685 149129846 -10469937 - L1MC3 LINE L1 -186 7599 7445 1 1722 216 0 0 0 chr3 149130020 149130044 -10469739 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1 1722 347 349 9 0 chr3 149131215 149131226 -10468557 - ID_B1 SINE B4 -34 190 150 1 1722 357 265 0 0 chr3 149131226 149131309 -10468474 - PB1D10 SINE Alu -20 97 15 1 1722 347 349 9 0 chr3 149131309 149131324 -10468459 - ID_B1 SINE B4 -34 149 81 1 1722 29705 77 4 19 chr3 149131379 149133421 -10466362 - L1_Mus1 LINE L1 0 6567 4585 1 1722 1189 61 0 0 chr3 149133421 149133569 -10466214 - B1_Mus1 SINE Alu 0 148 1 1 1722 29705 111 21 20 chr3 149133569 149137741 -10462042 - L1_Mus1 LINE L1 -1299 4584 380 1 1722 210 37 0 0 chr3 149137961 149137988 -10461795 + (TG)n Simple_repeat Simple_repeat 2 28 0 1 1722 482 331 43 24 chr3 149137990 149138154 -10461629 - B4A SINE B4 -27 265 99 1 1722 218 289 0 85 chr3 149139576 149139682 -10460101 - MIRb SINE MIR -82 186 90 1 1722 189 385 0 0 chr3 149140393 149140471 -10459312 - L2b LINE L2 -5 3421 3344 1 1722 229 333 39 0 chr3 149140618 149140696 -10459087 - L2b LINE L2 -211 3164 3084 1 1722 396 0 0 0 chr3 149142018 149142062 -10457721 + (CA)n Simple_repeat Simple_repeat 2 45 0 1 1722 378 0 0 0 chr3 149142695 149142737 -10457046 + (TATG)n Simple_repeat Simple_repeat 1 42 0 1 1722 389 346 27 30 chr3 149142900 149143162 -10456621 + HERV16-int LTR ERVL 2244 2504 -2492 1 1722 226 109 55 0 chr3 149144029 149144084 -10455699 + A-rich Low_complexity Low_complexity 3 60 0 1 1722 39 0 0 0 chr3 149144212 149144251 -10455532 + AT_rich Low_complexity Low_complexity 1 39 0 1 1722 381 162 0 0 chr3 149144329 149144397 -10455386 + C-rich Low_complexity Low_complexity 1 68 0 1 1722 734 274 136 32 chr3 149144428 149144595 -10455188 + RLTR28B LTR ERVL 130 318 -163 1 1722 432 0 0 0 chr3 149144595 149144643 -10455140 + (CA)n Simple_repeat Simple_repeat 1 48 0 1 1722 405 0 0 0 chr3 149144643 149144687 -10455096 + (GA)n Simple_repeat Simple_repeat 2 46 0 1 1722 734 274 136 32 chr3 149144687 149144834 -10454949 + RLTR28B LTR ERVL 319 477 -4 1 1722 736 228 203 35 chr3 149146157 149146389 -10453394 - B4 SINE B4 -19 273 3 1 1722 703 312 79 25 chr3 149147852 149148180 -10451603 + ORR1E LTR MaLR 5 368 -2 1 1722 223 164 16 16 chr3 149149312 149149325 -10450458 + (TA)n Simple_repeat Simple_repeat 1 13 0 1 1722 282 56 0 0 chr3 149149325 149149361 -10450422 + (TG)n Simple_repeat Simple_repeat 1 36 0 1 1722 223 164 16 16 chr3 149149361 149149409 -10450374 + (TA)n Simple_repeat Simple_repeat 2 50 0 1 1722 226 79 46 31 chr3 149149452 149149517 -10450266 + (TTATA)n Simple_repeat Simple_repeat 5 70 0 1 1722 226 329 130 39 chr3 149149628 149149859 -10449924 + Charlie20a DNA Charlie 56 307 -500 2 1722 554 135 10 0 chr3 149150099 149150203 -10449580 + (TG)n Simple_repeat Simple_repeat 2 106 0 2 1722 238 299 80 45 chr3 149150266 149150378 -10449405 - PB1D7 SINE Alu 0 120 5 2 1722 439 316 36 7 chr3 149150330 149150467 -10449316 - B4A SINE B4 -151 141 1 2 1722 226 310 132 52 chr3 149150487 149150623 -10449160 + Charlie20a DNA Charlie 613 759 -48 2 1722 234 316 18 161 chr3 149150631 149150854 -10448929 + ID_B1 SINE B4 1 191 -33 2 1722 417 129 0 0 chr3 149150884 149150954 -10448829 + (CA)n Simple_repeat Simple_repeat 1 70 0 2 1722 292 333 68 0 chr3 149152983 149153115 -10446668 - B1_Mur2 SINE Alu -7 142 2 2 1722 293 0 27 0 chr3 149153140 149153177 -10446606 + (CAAA)n Simple_repeat Simple_repeat 1 38 0 2 1722 2972 96 5 10 chr3 149153617 149154026 -10445757 - MTB_Mm LTR MaLR 0 407 1 2 1722 350 291 8 30 chr3 149154437 149154568 -10445215 + (TATG)n Simple_repeat Simple_repeat 1 128 0 2 1722 768 99 0 0 chr3 149155177 149155288 -10444495 + (GGAA)n Simple_repeat Simple_repeat 3 113 0 2 1722 534 268 99 5 chr3 149156081 149156272 -10443511 - B3 SINE B2 -6 210 2 2 1722 658 210 21 48 chr3 149157335 149157480 -10442303 + B1_Mus2 SINE Alu 6 146 -1 2 1722 240 138 45 15 chr3 149157480 149157546 -10442237 + (CAAA)n Simple_repeat Simple_repeat 1 68 0 2 1722 21 71 0 0 chr3 149157703 149157745 -10442038 + AT_rich Low_complexity Low_complexity 1 42 0 2 1722 483 18 0 0 chr3 149158962 149159018 -10440765 + (GA)n Simple_repeat Simple_repeat 1 56 0 2 1722 21 0 0 0 chr3 149159756 149159777 -10440006 + AT_rich Low_complexity Low_complexity 1 21 0 2 1723 204 40 0 0 chr3 149160639 149160664 -10439119 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 2 1723 344 148 0 29 chr3 149160966 149161070 -10438713 + A-rich Low_complexity Low_complexity 1 101 0 2 1723 447 148 0 0 chr3 149161078 149161166 -10438617 + (CA)n Simple_repeat Simple_repeat 1 88 0 2 1723 21 0 0 0 chr3 149161795 149161816 -10437967 + AT_rich Low_complexity Low_complexity 1 21 0 2 1723 342 0 0 0 chr3 149163065 149163103 -10436680 + (CAA)n Simple_repeat Simple_repeat 1 38 0 2 1723 453 272 134 18 chr3 149163542 149163819 -10435964 - L1MC2 LINE L1 -8 6336 6028 2 1723 236 352 28 9 chr3 149163870 149163976 -10435807 - L2 LINE L2 -640 2779 2672 2 1723 22 35 0 0 chr3 149164023 149164052 -10435731 + AT_rich Low_complexity Low_complexity 1 29 0 2 1723 227 160 19 39 chr3 149164931 149164983 -10434800 - B3A SINE B2 -146 52 2 2 1723 665 280 65 11 chr3 149164984 149165168 -10434615 + MTD LTR MaLR 37 230 -189 2 1723 188 325 12 24 chr3 149165674 149165756 -10434027 - L2 LINE L2 -3250 169 89 2 1723 472 264 86 18 chr3 149166144 149166364 -10433419 + Charlie20a DNA Charlie 339 573 -234 2 1723 417 305 17 89 chr3 149166525 149166705 -10433078 + B4A SINE B4 2 168 -124 2 1723 562 325 0 6 chr3 149166868 149167026 -10432757 - MTE2b LTR MaLR -219 160 4 2 1723 234 290 64 27 chr3 149167231 149167341 -10432442 - PB1D7 SINE Alu -2 118 5 2 1723 237 287 61 61 chr3 149167790 149167905 -10431878 - PB1 SINE Alu -2 125 11 2 1723 192 273 0 0 chr3 149168049 149168126 -10431657 + (TG)n Simple_repeat Simple_repeat 2 78 0 2 1723 237 248 167 122 chr3 149168143 149168299 -10431484 - RSINE1 SINE B4 0 165 3 2 1723 1132 82 0 0 chr3 149168373 149168520 -10431263 + B1_Mus2 SINE Alu 1 147 0 2 1723 306 107 0 0 chr3 149168522 149168578 -10431205 + (A)n Simple_repeat Simple_repeat 1 56 0 2 1723 276 30 0 0 chr3 149169499 149169532 -10430251 + (TG)n Simple_repeat Simple_repeat 1 33 0 2 1723 1532 22 43 0 chr3 149169658 149169843 -10429940 - B2_Mm1t SINE B2 0 193 1 2 1723 3061 103 7 9 chr3 149171392 149171841 -10427942 - Lx LINE L1 -14 6640 6193 2 1723 452 70 0 0 chr3 149171841 149171898 -10427885 + Lx LINE L1 6126 6182 -472 2 1723 23 33 0 0 chr3 149172012 149172042 -10427741 + AT_rich Low_complexity Low_complexity 1 30 0 2 1723 180 0 0 0 chr3 149173003 149173023 -10426760 + (TA)n Simple_repeat Simple_repeat 2 21 0 2 1723 3391 33 2 2 chr3 149173103 149173499 -10426284 - MTA_Mm LTR MaLR 0 396 1 2 1723 507 73 0 0 chr3 149173518 149173586 -10426197 + (A)n Simple_repeat Simple_repeat 1 68 0 2 1723 207 0 0 0 chr3 149174140 149174163 -10425620 + (TTTTTG)n Simple_repeat Simple_repeat 1 23 0 2 1723 1700 261 139 79 chr3 149174288 149175161 -10424622 + RCHARR1 DNA MER1_type 40 964 -10 2 1723 180 125 0 0 chr3 149176817 149176849 -10422934 + (CA)n Simple_repeat Simple_repeat 2 33 0 2 1723 2014 151 30 58 chr3 149177822 149178216 -10421567 - ORR1C2 LTR MaLR -1 383 1 2 1723 378 260 10 0 chr3 149178218 149178314 -10421469 - L1MA5 LINE L1 -16 6284 6188 2 1723 3716 31 36 2 chr3 149179062 149179510 -10420273 + L1Md_F2 LINE L1 6106 6568 -14 2 1723 35 0 0 0 chr3 149179514 149179549 -10420234 + AT_rich Low_complexity Low_complexity 1 35 0 2 1723 1425 204 82 35 chr3 149179642 149179982 -10419801 + ORR1D1 LTR MaLR 1 356 -18 2 1723 242 321 27 9 chr3 149180195 149180305 -10419478 - B1F SINE Alu -16 133 22 2 1723 372 22 0 0 chr3 149180929 149180974 -10418809 + (TC)n Simple_repeat Simple_repeat 2 46 0 2 1723 239 200 33 0 chr3 149181953 149182013 -10417770 + (CTGGGG)n Simple_repeat Simple_repeat 4 65 0 2 1723 243 0 0 0 chr3 149183189 149183216 -10416567 + (ATTG)n Simple_repeat Simple_repeat 1 27 0 2 1723 455 44 44 0 chr3 149183667 149183735 -10416048 - L1Md_F3 LINE L1 -14 6570 6500 2 1723 636 165 0 0 chr3 149183922 149184037 -10415746 + (TA)n Simple_repeat Simple_repeat 1 115 0 2 1723 354 303 26 32 chr3 149184800 149184939 -10414844 - B4A SINE B4 -89 135 2 2 1723 235 288 24 36 chr3 149184977 149185060 -10414723 - ID4_ SINE ID 0 83 2 2 1723 366 23 0 0 chr3 149185974 149186017 -10413766 + (CA)n Simple_repeat Simple_repeat 2 44 0 2 1723 343 196 92 10 chr3 149186069 149186167 -10413616 + HAL1-3A_ME LINE L1 1975 2080 -778 2 1723 462 88 0 0 chr3 149186543 149186611 -10413172 + (TC)n Simple_repeat Simple_repeat 2 69 0 2 1723 468 0 0 0 chr3 149187769 149187821 -10411962 + (CA)n Simple_repeat Simple_repeat 1 52 0 2 1723 27 29 0 0 chr3 149188588 149188622 -10411161 + AT_rich Low_complexity Low_complexity 1 34 0 2 1723 798 192 167 17 chr3 149188750 149188930 -10410853 - B3 SINE B2 -5 211 5 2 1723 1158 143 0 0 chr3 149189615 149189916 -10409867 + (TA)n Simple_repeat Simple_repeat 1 301 0 2 1723 308 113 18 70 chr3 149190512 149190569 -10409214 - HAL1-3A_ME LINE L1 -830 2028 1975 2 1723 711 176 0 0 chr3 149190604 149190763 -10409020 + (TG)n Simple_repeat Simple_repeat 2 160 0 2 1723 485 342 53 16 chr3 149190800 149190987 -10408796 - B4A SINE B4 -84 208 15 2 1723 529 279 16 68 chr3 149192157 149192349 -10407434 - B3A SINE B2 -16 182 1 2 1723 302 355 129 14 chr3 149194077 149194217 -10405566 - B4A SINE B4 -8 157 1 2 1723 195 42 0 0 chr3 149194266 149194290 -10405493 + (TA)n Simple_repeat Simple_repeat 2 25 0 2 1723 253 397 52 35 chr3 149194324 149194556 -10405227 + L4 LINE RTE 1624 1859 -170 2 1723 23 0 0 0 chr3 149196233 149196256 -10403527 + AT_rich Low_complexity Low_complexity 1 23 0 2 1723 293 82 20 0 chr3 149198647 149198696 -10401087 + (TG)n Simple_repeat Simple_repeat 2 51 0 2 1723 230 235 203 14 chr3 149199235 149199304 -10400479 + MIR SINE MIR 65 146 -116 2 1723 21 0 0 0 chr3 149199569 149199590 -10400193 + AT_rich Low_complexity Low_complexity 1 21 0 2 1723 25 95 0 0 chr3 149199717 149199791 -10399992 + AT_rich Low_complexity Low_complexity 1 74 0 2 1723 543 31 0 0 chr3 149200221 149200286 -10399497 + (CA)n Simple_repeat Simple_repeat 1 65 0 2 1723 258 32 0 0 chr3 149200848 149200879 -10398904 + (TG)n Simple_repeat Simple_repeat 2 32 0 2 1723 329 288 26 43 chr3 149201565 149201681 -10398102 - MTEa LTR MaLR -13 366 253 2 1723 327 49 0 0 chr3 149202298 149202339 -10397444 + (TG)n Simple_repeat Simple_repeat 2 42 0 2 1723 374 186 42 109 chr3 149202359 149202478 -10397305 - B3 SINE B2 -69 126 1 2 1723 765 304 134 36 chr3 149203169 149204174 -10395609 - L1MA8 LINE L1 -4 6287 5162 2 1723 423 253 0 21 chr3 149204268 149204365 -10395418 + RSINE1 SINE B4 8 102 -63 2 1723 2018 138 58 12 chr3 149204368 149204712 -10395071 - Lx2 LINE L1 -1 6996 6637 2 1723 390 21 0 0 chr3 149204752 149204799 -10394984 + (TG)n Simple_repeat Simple_repeat 1 47 0 2 1723 228 86 0 0 chr3 149204799 149204834 -10394949 + (GA)n Simple_repeat Simple_repeat 2 36 0 2 1723 412 305 23 11 chr3 149204981 149205115 -10394668 - PB1D10 SINE Alu -3 145 8 2 1723 205 197 30 0 chr3 149205311 149205377 -10394406 + GA-rich Low_complexity Low_complexity 1 68 0 2 1723 198 0 0 0 chr3 149205699 149205721 -10394062 + (CAAA)n Simple_repeat Simple_repeat 1 22 0 2 1723 207 69 0 0 chr3 149207287 149207316 -10392467 + (CCA)n Simple_repeat Simple_repeat 3 31 0 2 1723 831 241 6 0 chr3 149207771 149207937 -10391846 + B3 SINE B2 2 168 -48 2 1723 664 278 58 12 chr3 149209077 149209248 -10390535 + ID_B1 SINE B4 21 199 -25 2 1723 204 159 0 22 chr3 149209254 149209299 -10390484 + A-rich Low_complexity Low_complexity 2 45 0 2 1723 1020 236 79 60 chr3 149210157 149210483 -10389300 + ORR1E LTR MaLR 4 359 0 2 1723 183 250 0 24 chr3 149212536 149212577 -10387206 + MIRb SINE MIR 226 265 -3 2 1723 343 264 90 22 chr3 149214997 149215175 -10384608 + L1MD3 LINE L1 7093 7282 -713 2 1723 334 331 65 39 chr3 149215175 149215329 -10384454 + MLT1F1 LTR MaLR 27 184 -385 2 1723 388 303 84 26 chr3 149215410 149215790 -10383993 + L1MD3 LINE L1 7585 7986 -9 2 1723 21 0 0 0 chr3 149216291 149216312 -10383471 + AT_rich Low_complexity Low_complexity 1 21 0 2 1723 357 284 234 0 chr3 149216462 149216603 -10383180 + B3 SINE B2 38 211 -5 3 1723 260 354 0 0 chr3 149216754 149216836 -10382947 - ID4_ SINE ID 0 83 2 3 1723 456 351 17 99 chr3 149217748 149218042 -10381741 + B4A SINE B4 1 270 -22 3 1723 426 39 0 0 chr3 149218044 149218096 -10381687 + (CA)n Simple_repeat Simple_repeat 1 52 0 3 1723 24 32 0 0 chr3 149219927 149219958 -10379825 + AT_rich Low_complexity Low_complexity 1 31 0 3 1723 510 304 171 12 chr3 149222051 149222297 -10377486 + B4A SINE B4 5 289 -3 3 1723 224 381 43 34 chr3 149223179 149223388 -10376395 + L2 LINE L2 2565 2775 -644 3 1723 22 56 0 0 chr3 149226259 149226295 -10373488 + AT_rich Low_complexity Low_complexity 1 36 0 3 1723 452 253 114 0 chr3 149226295 149226453 -10373330 - Lx7 LINE L1 -318 7378 7203 3 1723 1428 227 30 11 chr3 149226467 149226836 -10372947 + Lx7 LINE L1 6734 7109 -587 3 1723 356 356 49 10 chr3 149227378 149227582 -10372201 - Ricksha_c DNA MuDR -1203 845 634 3 1723 346 173 37 46 chr3 149227714 149227823 -10371960 - Ricksha_c DNA MuDR -1600 448 341 3 1723 21 0 0 0 chr3 149227994 149228015 -10371768 + AT_rich Low_complexity Low_complexity 1 21 0 3 1723 24 0 0 0 chr3 149228374 149228398 -10371385 + AT_rich Low_complexity Low_complexity 1 24 0 3 1723 359 125 14 0 chr3 149228922 149228994 -10370789 + (TG)n Simple_repeat Simple_repeat 2 74 0 3 1723 286 393 5 85 chr3 149229084 149229284 -10370499 - B4A SINE B4 -106 186 3 3 1723 662 280 20 101 chr3 149230766 149231072 -10368711 + B4A SINE B4 1 281 -11 3 1723 216 0 0 0 chr3 149232106 149232130 -10367653 + (CAAT)n Simple_repeat Simple_repeat 3 26 0 3 1723 182 179 18 0 chr3 149232816 149232872 -10366911 + (CA)n Simple_repeat Simple_repeat 1 57 0 3 1723 798 217 309 42 chr3 149234956 149235421 -10364362 + Lx9 LINE L1 7036 7624 -20 3 1723 405 39 0 0 chr3 149235424 149235475 -10364308 + (CA)n Simple_repeat Simple_repeat 2 52 0 3 1723 348 24 0 0 chr3 149235486 149235527 -10364256 + (TA)n Simple_repeat Simple_repeat 1 41 0 3 1723 409 89 12 25 chr3 149235527 149235608 -10364175 + (TCTA)n Simple_repeat Simple_repeat 2 81 0 3 1723 1341 201 166 6 chr3 149235773 149236104 -10363679 + ORR1C2 LTR MaLR 1 384 0 3 1723 3309 8 0 0 chr3 149236314 149236685 -10363098 + L1Md_A LINE L1 6211 6581 -1 3 1723 251 312 0 67 chr3 149236790 149236910 -10362873 - MIRb SINE MIR -76 192 81 3 1723 348 24 0 0 chr3 149237938 149237979 -10361804 + (TG)n Simple_repeat Simple_repeat 1 41 0 3 1723 365 374 72 0 chr3 149237980 149238119 -10361664 - RSINE1 SINE B4 -14 151 3 3 1723 459 0 0 0 chr3 149241481 149241532 -10358251 + (CA)n Simple_repeat Simple_repeat 2 52 0 3 1723 387 0 0 0 chr3 149241532 149241574 -10358209 + (GA)n Simple_repeat Simple_repeat 2 44 0 3 1723 275 173 0 12 chr3 149242568 149242650 -10357133 + GA-rich Low_complexity Low_complexity 2 82 0 3 1723 237 132 0 0 chr3 149242662 149242700 -10357083 + (TAGA)n Simple_repeat Simple_repeat 3 40 0 3 1723 228 86 0 0 chr3 149242923 149242958 -10356825 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 3 1723 230 391 9 26 chr3 149243025 149243138 -10356645 + B3A SINE B2 38 148 -50 3 1723 467 45 0 15 chr3 149243138 149243205 -10356578 + (CA)n Simple_repeat Simple_repeat 1 66 0 3 1723 268 298 83 25 chr3 149243262 149243433 -10356350 + MIRc SINE MIR 79 262 0 3 1723 564 15 0 0 chr3 149243997 149244062 -10355721 + (TC)n Simple_repeat Simple_repeat 2 66 0 3 1723 417 39 0 0 chr3 149244062 149244112 -10355671 + (TG)n Simple_repeat Simple_repeat 2 52 0 3 1723 518 276 69 9 chr3 149244148 149244364 -10355419 - Lx8 LINE L1 -441 7032 6804 3 1723 443 318 34 11 chr3 149245211 149245386 -10354397 - B3A SINE B2 -16 182 4 3 1723 276 318 84 0 chr3 149245457 149245564 -10354219 + PB1D10 SINE Alu 1 116 -1 3 1723 237 304 14 14 chr3 149245583 149245653 -10354130 + ID4_ SINE ID 14 83 0 3 1723 239 0 0 31 chr3 149245657 149245689 -10354094 + (CAAAA)n Simple_repeat Simple_repeat 4 34 0 3 1723 214 152 34 0 chr3 149246026 149246085 -10353698 + CT-rich Low_complexity Low_complexity 3 63 0 3 1723 243 0 0 0 chr3 149246425 149246452 -10353331 + (A)n Simple_repeat Simple_repeat 1 27 0 3 1723 263 93 23 0 chr3 149247199 149247242 -10352541 + (TCC)n Simple_repeat Simple_repeat 2 45 0 3 1723 270 81 0 0 chr3 149247316 149247353 -10352430 + (TC)n Simple_repeat Simple_repeat 2 38 0 3 1723 346 346 9 60 chr3 149247353 149247571 -10352212 - ID_B1 SINE B4 -16 208 2 3 1723 279 0 0 0 chr3 149249295 149249326 -10350457 + (A)n Simple_repeat Simple_repeat 1 31 0 3 1723 389 20 20 0 chr3 149250331 149250381 -10349402 + (TC)n Simple_repeat Simple_repeat 1 51 0 3 1723 333 0 0 0 chr3 149250381 149250417 -10349366 + (CA)n Simple_repeat Simple_repeat 1 37 0 3 1723 360 0 0 0 chr3 149252989 149253029 -10346754 + (TG)n Simple_repeat Simple_repeat 1 40 0 3 1723 459 0 0 0 chr3 149253029 149253079 -10346704 + (GA)n Simple_repeat Simple_repeat 1 51 0 3 1723 1881 312 68 43 chr3 149253110 149253994 -10345789 - Lx8 LINE L1 -176 7297 6412 3 1723 441 0 0 0 chr3 149253994 149254043 -10345740 + (TAGTG)n Simple_repeat Simple_repeat 5 53 0 3 1723 1881 312 68 43 chr3 149254043 149254144 -10345639 - Lx8 LINE L1 -1062 6411 6289 3 1723 517 305 85 58 chr3 149254215 149254473 -10345310 + MTE2a LTR MaLR 28 301 -78 3 1723 786 11 0 0 chr3 149254861 149254952 -10344831 + (GA)n Simple_repeat Simple_repeat 1 91 0 3 1723 1301 304 61 23 chr3 149254952 149255609 -10344174 - Lx8 LINE L1 -17 5830 5149 3 1723 22 35 0 0 chr3 149256644 149256673 -10343110 + AT_rich Low_complexity Low_complexity 1 29 0 3 1723 455 134 12 0 chr3 149256799 149256881 -10342902 + (TCCC)n Simple_repeat Simple_repeat 4 86 0 3 1723 357 256 11 58 chr3 149256934 149257021 -10342762 - PB1D10 SINE Alu -24 93 11 3 1723 34 24 0 0 chr3 149257027 149257068 -10342715 + AT_rich Low_complexity Low_complexity 1 41 0 3 1723 294 213 0 0 chr3 149257076 149257123 -10342660 - RSINE1 SINE B4 -29 136 90 3 1723 198 0 0 0 chr3 149257170 149257192 -10342591 + (T)n Simple_repeat Simple_repeat 1 22 0 3 1723 270 0 0 0 chr3 149258014 149258044 -10341739 + (A)n Simple_repeat Simple_repeat 1 30 0 3 1723 627 247 14 0 chr3 149258120 149258266 -10341517 - B1_Mur1 SINE Alu 0 149 2 3 1723 375 291 30 45 chr3 149258944 149259077 -10340706 + B4A SINE B4 11 141 -151 3 1723 575 248 14 35 chr3 149259124 149259266 -10340517 + B1_Mur4 SINE Alu 10 148 -2 3 1723 3479 25 2 0 chr3 149259292 149259687 -10340096 - MTA_Mm LTR MaLR 0 396 1 3 1723 323 149 14 0 chr3 149261049 149261123 -10338660 + (TA)n Simple_repeat Simple_repeat 2 76 0 3 1723 252 0 0 0 chr3 149261396 149261424 -10338359 + (TG)n Simple_repeat Simple_repeat 1 28 0 3 1723 555 302 60 0 chr3 149261694 149261834 -10337949 + MTD LTR MaLR 54 202 -217 3 1723 457 248 49 10 chr3 149261834 149261936 -10337847 + B1_Mur4 SINE Alu 4 109 -41 3 1723 237 333 41 90 chr3 149261936 149261952 -10337831 + ID_B1 SINE B4 84 195 -29 3 1723 320 299 107 21 chr3 149262665 149262805 -10336978 + MER2 DNA MER2_type 4 155 -190 3 1723 519 252 36 15 chr3 149262995 149263132 -10336651 - B4A SINE B4 0 292 153 3 1723 219 299 220 11 chr3 149263411 149263597 -10336186 - L2a LINE L2 -163 3263 3039 3 1723 183 344 31 0 chr3 149263822 149263886 -10335897 + MIRb SINE MIR 197 262 -6 3 1723 306 0 0 0 chr3 149264232 149264266 -10335517 + (TG)n Simple_repeat Simple_repeat 2 35 0 3 1723 180 358 103 9 chr3 149264424 149264531 -10335252 - L2a LINE L2 -478 2941 2825 3 1723 782 113 0 8 chr3 149264720 149264845 -10334938 + (TTCC)n Simple_repeat Simple_repeat 2 125 0 3 1723 230 89 0 43 chr3 149264839 149264886 -10334897 + (TCTCTG)n Simple_repeat Simple_repeat 2 46 0 3 1723 276 306 0 23 chr3 149265632 149265643 -10334140 + polypyrimidine Low_complexity Low_complexity 75 85 0 3 1723 1335 50 0 0 chr3 149265643 149265823 -10333960 + (TTTCC)n Simple_repeat Simple_repeat 1 180 0 3 1723 276 306 0 23 chr3 149265823 149265898 -10333885 + polypyrimidine Low_complexity Low_complexity 1 74 0 3 1723 810 151 0 0 chr3 149265899 149266038 -10333745 + CT-rich Low_complexity Low_complexity 1 139 0 3 1723 195 100 0 0 chr3 149267473 149267503 -10332280 + (TTA)n Simple_repeat Simple_repeat 2 31 0 3 1723 703 275 35 103 chr3 149267557 149267869 -10331914 + B4 SINE B4 2 292 0 3 1723 195 170 0 0 chr3 149267873 149267920 -10331863 + (CA)n Simple_repeat Simple_repeat 1 47 0 3 1723 357 24 0 0 chr3 149267920 149267962 -10331821 + (GA)n Simple_repeat Simple_repeat 2 43 0 3 1723 507 234 9 0 chr3 149268393 149268500 -10331283 - B1_Mur4 SINE Alu 0 150 43 3 1723 321 405 0 0 chr3 149268503 149268629 -10331154 + C-rich Low_complexity Low_complexity 30 155 0 3 1723 492 156 0 0 chr3 149268551 149268628 -10331155 + (TCTCTG)n Simple_repeat Simple_repeat 1 77 0 3 1723 239 244 0 0 chr3 149268744 149268789 -10330994 - BC1_Mm scRNA scRNA -99 53 9 3 1723 317 314 31 125 chr3 149268848 149269008 -10330775 - RSINE1 SINE B4 -3 162 18 3 1723 342 243 14 0 chr3 149269120 149269190 -10330593 - B1_Mur3 SINE Alu 0 149 79 3 1723 322 184 12 106 chr3 149271363 149271448 -10328335 + HAL1-3A_ME LINE L1 1951 2027 -831 3 1723 180 0 0 0 chr3 149271464 149271484 -10328299 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 3 1723 468 67 45 0 chr3 149273042 149273131 -10326652 + (TAGA)n Simple_repeat Simple_repeat 2 94 0 3 1723 1446 28 79 0 chr3 149273567 149273726 -10326057 + B2_Mm1a SINE B2 2 160 -33 3 1723 207 0 0 0 chr3 149273726 149273749 -10326034 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 3 1723 1446 28 79 0 chr3 149273749 149273767 -10326016 + B2_Mm1a SINE B2 161 191 -2 3 1723 506 57 14 0 chr3 149273831 149273901 -10325882 + (TC)n Simple_repeat Simple_repeat 2 72 0 3 1723 543 323 75 54 chr3 149273906 149274145 -10325638 - B4 SINE B4 0 292 49 3 1723 204 216 0 0 chr3 149274571 149274608 -10325175 + (ATG)n Simple_repeat Simple_repeat 2 38 0 3 1723 257 261 14 0 chr3 149274767 149274836 -10324947 + ID4_ SINE ID 5 74 -9 4 1723 607 232 0 29 chr3 149274947 149275120 -10324663 - Lx4B LINE L1 -1 7057 6890 4 1723 5767 102 34 12 chr3 149275118 149276044 -10323739 + L1_Mur2 LINE L1 4461 5406 -471 4 1723 349 363 30 27 chr3 149276222 149276485 -10323298 + MIRb SINE MIR 5 268 0 4 1723 21 0 0 0 chr3 149276485 149276506 -10323277 + AT_rich Low_complexity Low_complexity 1 21 0 4 1723 254 339 18 0 chr3 149276610 149276722 -10323061 + (CA)n Simple_repeat Simple_repeat 1 114 0 4 1723 244 234 23 39 chr3 149277514 149277643 -10322140 + (TTTAA)n Simple_repeat Simple_repeat 5 131 0 4 1723 867 294 37 68 chr3 149278440 149278521 -10321262 - ORR1E LTR MaLR -4 355 274 4 1723 1879 227 143 14 chr3 149278521 149279030 -10320753 + RMER15 LTR ERVL 1 575 0 4 1723 867 294 37 68 chr3 149279030 149279273 -10320510 - ORR1E LTR MaLR -86 273 41 4 1723 378 0 0 0 chr3 149279644 149279686 -10320097 + (CA)n Simple_repeat Simple_repeat 2 43 0 4 1723 6184 80 1 7 chr3 149279738 149280588 -10319195 - L1_Mus1 LINE L1 0 6567 5733 4 1723 444 296 111 36 chr3 149280590 149281172 -10318611 + L1ME1 LINE L1 5367 6016 -162 4 1723 345 82 0 0 chr3 149281312 149281361 -10318422 + (CA)n Simple_repeat Simple_repeat 1 49 0 4 1723 593 325 111 36 chr3 149281747 149282404 -10317379 + L1ME1 LINE L1 5297 6002 -177 4 1723 530 258 54 41 chr3 149282401 149282596 -10317187 + L1MA5A LINE L1 5543 5731 -458 4 1723 287 282 76 21 chr3 149282622 149282767 -10317016 + L1MA5A LINE L1 5861 6013 -284 4 1723 387 0 0 0 chr3 149283327 149283370 -10316413 + (TG)n Simple_repeat Simple_repeat 1 43 0 4 1723 180 0 0 0 chr3 149283492 149283512 -10316271 + (T)n Simple_repeat Simple_repeat 1 20 0 4 1723 962 72 0 0 chr3 149283512 149283637 -10316146 - B1_Mm SINE Alu -21 126 2 4 1723 424 236 0 78 chr3 149283536 149283651 -10316132 - MT2B LTR ERVL -344 257 152 4 1723 2857 181 43 20 chr3 149284161 149284723 -10315060 + RMER15 LTR ERVL 1 575 0 4 1723 946 237 197 22 chr3 149285543 149285858 -10313925 + ORR1D1 LTR MaLR 1 370 -4 4 1723 22 94 0 0 chr3 149285902 149285966 -10313817 + AT_rich Low_complexity Low_complexity 1 64 0 4 1723 23 0 0 0 chr3 149288441 149288464 -10311319 + AT_rich Low_complexity Low_complexity 1 23 0 4 1723 245 326 10 0 chr3 149288466 149288564 -10311219 + PB1D10 SINE Alu 1 99 -18 4 1723 375 312 12 43 chr3 149289218 149289379 -10310404 + MER115 DNA Tip100 530 685 -8 4 1723 416 244 96 37 chr3 149289619 149289755 -10310028 + B1_Mur3 SINE Alu 2 145 -4 4 1723 516 346 80 60 chr3 149289782 149290096 -10309687 + MLT1I LTR MaLR 80 399 -12 4 1723 1929 162 137 5 chr3 149290465 149290837 -10308946 + MTC LTR MaLR 1 421 0 4 1724 731 244 51 6 chr3 149291597 149291774 -10308009 - B3A SINE B2 -6 192 8 4 1724 25 51 0 0 chr3 149291788 149291827 -10307956 + AT_rich Low_complexity Low_complexity 1 39 0 4 1724 231 223 0 72 chr3 149292045 149292125 -10307658 - Lx9 LINE L1 -370 5930 5846 4 1724 1850 213 17 34 chr3 149292300 149292717 -10307066 + RLTR16 LTR ERVK 4 413 -92 4 1724 464 108 21 0 chr3 149292720 149292813 -10306970 + (TCTG)n Simple_repeat Simple_repeat 2 96 0 4 1724 525 156 0 11 chr3 149292820 149292911 -10306872 + RLTR16 LTR ERVK 416 505 0 4 1724 249 290 215 0 chr3 149293401 149293508 -10306275 - B1_Mur4 SINE Alu -5 145 16 4 1724 229 120 19 39 chr3 149293879 149293931 -10305852 - L1MC4 LINE L1 -4605 1610 1560 4 1724 687 108 0 0 chr3 149294924 149295026 -10304757 + (GA)n Simple_repeat Simple_repeat 1 102 0 4 1724 570 161 0 0 chr3 149295828 149295940 -10303843 + (CA)n Simple_repeat Simple_repeat 1 112 0 4 1724 2366 140 40 0 chr3 149296046 149296425 -10303358 - ORR1B1 LTR MaLR 0 394 1 4 1724 369 266 105 0 chr3 149296845 149296969 -10302814 + B1_Mur1 SINE Alu 2 138 -11 4 1724 200 118 29 0 chr3 149296972 149297006 -10302777 + (TAAG)n Simple_repeat Simple_repeat 1 35 0 4 1724 792 262 11 0 chr3 149297091 149297282 -10302501 - B3 SINE B2 -6 210 18 4 1724 253 43 21 42 chr3 149297338 149297386 -10302397 + (TTTTTG)n Simple_repeat Simple_repeat 2 48 0 4 1724 835 273 72 29 chr3 149298484 149298763 -10301020 + ORR1E LTR MaLR 14 304 -55 4 1724 422 36 18 0 chr3 149298766 149298822 -10300961 + (TCCC)n Simple_repeat Simple_repeat 3 59 0 4 1724 301 274 106 44 chr3 149298884 149299155 -10300628 - L1ME2z LINE L1 -248 5916 5642 4 1724 432 332 42 73 chr3 149299468 149299728 -10300055 - MER2 DNA MER2_type -1 344 93 4 1724 369 284 119 54 chr3 149299827 149300255 -10299528 - L1MC LINE L1 -940 5206 4751 4 1724 284 264 36 9 chr3 149301467 149301578 -10298205 + L1M4 LINE L1 2902 3015 -3131 4 1724 692 23 0 11 chr3 149301626 149301713 -10298070 + (GGA)n Simple_repeat Simple_repeat 3 88 0 4 1724 714 55 0 0 chr3 149302564 149302655 -10297128 + (TTTTA)n Simple_repeat Simple_repeat 5 95 0 4 1724 387 0 0 0 chr3 149302995 149303038 -10296745 + (TG)n Simple_repeat Simple_repeat 1 43 0 4 1724 398 329 148 28 chr3 149303802 149304202 -10295581 - L1M5 LINE L1 -1252 4894 4447 4 1724 503 274 24 48 chr3 149304214 149304379 -10295404 - B3A SINE B2 0 198 38 4 1724 260 255 98 39 chr3 149304528 149304630 -10295153 + MTEa LTR MaLR 267 374 -5 4 1724 360 0 0 0 chr3 149305208 149305248 -10294535 + (TG)n Simple_repeat Simple_repeat 2 41 0 4 1724 693 82 0 0 chr3 149305916 149306013 -10293770 + (TG)n Simple_repeat Simple_repeat 2 98 0 4 1724 295 181 28 0 chr3 149306250 149306322 -10293461 + CT-rich Low_complexity Low_complexity 2 75 0 4 1724 346 257 29 0 chr3 149306326 149306396 -10293387 - RSINE1 SINE B4 -91 74 3 4 1724 904 251 162 48 chr3 149306506 149306840 -10292943 - ORR1D1 LTR MaLR 0 374 3 4 1724 26 74 0 0 chr3 149306902 149306956 -10292827 + AT_rich Low_complexity Low_complexity 1 54 0 4 1724 24 0 0 0 chr3 149307499 149307523 -10292260 + AT_rich Low_complexity Low_complexity 1 24 0 4 1724 511 250 39 128 chr3 149307552 149307731 -10292052 + RSINE1 SINE B4 3 165 0 4 1724 773 322 49 23 chr3 149308026 149308331 -10291452 + MLT1A0 LTR MaLR 1 313 -52 4 1724 476 16 16 0 chr3 149308445 149308506 -10291277 + (TTTTG)n Simple_repeat Simple_repeat 4 65 0 4 1724 467 230 10 10 chr3 149308572 149308673 -10291110 - B4A SINE B4 -187 105 5 4 1724 195 42 0 0 chr3 149308801 149308825 -10290958 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 4 1724 355 335 59 38 chr3 149309179 149309365 -10290418 - L2 LINE L2 -559 2860 2671 4 1724 704 232 48 6 chr3 149309673 149309886 -10289897 - L1MB2 LINE L1 -344 5968 5734 4 1724 406 274 32 70 chr3 149310323 149310480 -10289303 - MTEb LTR MaLR -226 153 3 4 1724 342 262 37 0 chr3 149310490 149310597 -10289186 - L1MB2 LINE L1 -813 5327 5217 4 1724 262 303 82 11 chr3 149310682 149310911 -10288872 + L1MC4 LINE L1 1564 1829 -4482 4 1724 225 176 29 14 chr3 149311270 149311339 -10288444 + (TA)n Simple_repeat Simple_repeat 2 71 0 4 1724 31546 122 17 20 chr3 149311408 149317738 -10282045 - L1_Mus1 LINE L1 0 6567 261 4 1724 19000 186 50 18 chr3 149317763 149319939 -10279844 + Lx6 LINE L1 1531 3739 -2141 4 1724 270 0 0 0 chr3 149319939 149319969 -10279814 + (TAAAA)n Simple_repeat Simple_repeat 1 30 0 4 1724 19000 213 58 24 chr3 149319969 149323506 -10276277 + Lx6 LINE L1 3740 7446 -14 4 1724 246 62 0 0 chr3 149323903 149323935 -10275848 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 4 1724 1009 231 46 122 chr3 149325433 149325843 -10273940 + MTE2a LTR MaLR 1 379 0 4 1724 303 270 19 6 chr3 149327254 149327347 -10272436 + ID4 SINE ID 2 95 -57 4 1724 525 32 0 0 chr3 149328054 149328117 -10271666 + (TA)n Simple_repeat Simple_repeat 2 64 0 4 1724 21 0 0 0 chr3 149328570 149328591 -10271192 + AT_rich Low_complexity Low_complexity 1 21 0 4 1724 24 32 0 0 chr3 149329014 149329045 -10270738 + AT_rich Low_complexity Low_complexity 1 31 0 4 1724 426 292 25 83 chr3 149329101 149329213 -10270570 - B1F SINE Alu 0 149 40 4 1724 3574 10 0 0 chr3 149329213 149329609 -10270174 + MTA_Mm LTR MaLR 1 396 0 4 1724 426 292 25 83 chr3 149329609 149329653 -10270130 - B1F SINE Alu -110 39 2 4 1724 945 307 60 43 chr3 149329989 149330387 -10269396 + MTD LTR MaLR 1 405 -14 4 1724 1591 150 0 146 chr3 149330428 149330732 -10269051 - L1_Mm LINE L1 -1019 4864 4616 4 1724 1165 61 0 0 chr3 149330732 149330879 -10268904 - B1_Mus2 SINE Alu 0 147 1 4 1724 1591 150 0 146 chr3 149330879 149330957 -10268826 - L1_Mm LINE L1 -1268 4615 4538 4 1724 522 176 43 22 chr3 149330958 149331097 -10268686 + Lx LINE L1 6512 6653 -1 4 1724 718 275 121 9 chr3 149331097 149331321 -10268462 + ORR1E LTR MaLR 102 350 -9 4 1724 207 125 0 0 chr3 149331481 149331521 -10268262 + (TTTTTA)n Simple_repeat Simple_repeat 3 42 0 4 1724 1271 152 4 63 chr3 149332508 149332747 -10267036 - URR1B DNA MER1_type 0 225 1 4 1724 27 29 0 0 chr3 149332763 149332797 -10266986 + AT_rich Low_complexity Low_complexity 1 34 0 4 1724 324 351 9 17 chr3 149332914 149333030 -10266753 - Lx8 LINE L1 -180 7293 7179 4 1724 2013 82 25 0 chr3 149334630 149334912 -10264871 - L1_Mus1 LINE L1 0 6567 6279 4 1724 489 17 0 0 chr3 149335425 149335483 -10264300 + (CA)n Simple_repeat Simple_repeat 2 59 0 4 1724 277 125 36 0 chr3 149336658 149336714 -10263069 + GA-rich Low_complexity Low_complexity 1 58 0 4 1724 549 250 208 0 chr3 149336857 149337154 -10262629 + L1MA4 LINE L1 5371 5738 -562 4 1724 4749 74 16 2 chr3 149337171 149337804 -10261979 + Lx3_Mus LINE L1 6363 7004 -5 4 1724 215 333 149 0 chr3 149337828 149337915 -10261868 + PB1D10 SINE Alu 18 117 0 4 1724 198 0 0 0 chr3 149337924 149337946 -10261837 + (TCCA)n Simple_repeat Simple_repeat 2 23 0 4 1724 402 205 104 2 chr3 149338353 149338482 -10261301 + L1MA4 LINE L1 5691 5886 -414 4 1724 2122 250 92 24 chr3 149339122 149339704 -10260079 - RMER19B LTR ERVK 0 902 63 4 1724 233 222 0 0 chr3 149339997 149340042 -10259741 + CT-rich Low_complexity Low_complexity 1 45 0 4 1724 785 255 31 212 chr3 149340183 149340672 -10259111 + MTD LTR MaLR 10 379 0 5 1724 1232 42 0 0 chr3 149341904 149342071 -10257712 + L1_Mm LINE L1 1203 1369 -4514 5 1724 240 283 80 10 chr3 149343173 149343273 -10256510 - Cheshire DNA MER1_type -2141 279 173 5 1724 231 284 0 24 chr3 149343527 149343610 -10256173 + GA-rich Low_complexity Low_complexity 5 85 0 5 1724 204 40 0 0 chr3 149344608 149344633 -10255150 + (TG)n Simple_repeat Simple_repeat 1 25 0 5 1724 318 156 0 0 chr3 149344964 149345028 -10254755 + (TG)n Simple_repeat Simple_repeat 2 65 0 5 1724 184 175 49 24 chr3 149345672 149345713 -10254070 - MER5A DNA MER1_type -31 158 117 5 1724 23 0 0 0 chr3 149345985 149346008 -10253775 + AT_rich Low_complexity Low_complexity 1 23 0 5 1724 560 91 11 0 chr3 149347223 149347311 -10252472 + (TC)n Simple_repeat Simple_repeat 2 90 0 5 1724 670 308 36 25 chr3 149347454 149347734 -10252049 + B4A SINE B4 4 286 -6 5 1724 216 216 39 0 chr3 149348553 149348604 -10251179 + CT-rich Low_complexity Low_complexity 4 56 0 5 1724 242 322 46 40 chr3 149348682 149348834 -10250949 + MIR3 SINE MIR 3 155 -53 5 1724 394 336 78 31 chr3 149349181 149349439 -10250344 - B4A SINE B4 -15 277 8 5 1724 242 326 0 31 chr3 149349760 149349858 -10249925 - MTEb LTR MaLR -14 365 271 5 1724 536 368 82 58 chr3 149350236 149350773 -10249010 - MTE-int LTR MaLR -539 1041 492 5 1724 287 217 17 0 chr3 149350998 149351058 -10248725 - B4 SINE B4 -207 85 25 5 1724 22 35 0 0 chr3 149351432 149351461 -10248322 + AT_rich Low_complexity Low_complexity 1 29 0 5 1724 834 331 11 36 chr3 149352331 149352607 -10247176 + B4 SINE B4 6 274 -18 5 1724 414 0 0 0 chr3 149352661 149352707 -10247076 + (CA)n Simple_repeat Simple_repeat 2 47 0 5 1724 645 282 150 48 chr3 149353318 149353758 -10246025 + MLT1E1A LTR MaLR 189 673 -7 5 1724 2820 237 93 18 chr3 149355555 149355879 -10243904 - Lx9 LINE L1 -588 7056 6696 5 1724 340 20 0 39 chr3 149355879 149355930 -10243853 + (TTTTG)n Simple_repeat Simple_repeat 2 50 0 5 1724 2820 269 81 25 chr3 149355930 149356717 -10243066 - Lx9 LINE L1 -949 6695 5775 5 1724 1202 208 221 10 chr3 149356715 149357056 -10242727 + Lx9 LINE L1 7094 7504 -140 5 1724 522 46 0 0 chr3 149357056 149357121 -10242662 + (TC)n Simple_repeat Simple_repeat 2 66 0 5 1724 189 0 0 0 chr3 149357121 149357141 -10242642 + (TG)n Simple_repeat Simple_repeat 2 22 0 5 1724 1202 176 501 5 chr3 149357141 149357229 -10242554 + Lx9 LINE L1 7505 7641 -3 5 1724 894 19 0 0 chr3 149358079 149358183 -10241600 + (TTC)n Simple_repeat Simple_repeat 2 105 0 5 1724 524 0 0 0 chr3 149358699 149358759 -10241024 - MT2_Mm LTR ERVL -433 60 1 5 1724 302 0 0 0 chr3 149358759 149358797 -10240986 - MERVL-int LTR ERVL 0 5485 5448 5 1724 371 111 26 53 chr3 149358797 149358873 -10240910 - ORR1A3-int LTR MaLR -1323 640 567 5 1724 2584 25 3 0 chr3 149358873 149359193 -10240590 - MERVL-int LTR ERVL -114 5371 5051 5 1724 450 255 245 0 chr3 149359668 149359884 -10239899 - Lx9 LINE L1 -299 7345 7077 5 1724 297 302 35 35 chr3 149359883 149359996 -10239787 + Lx9 LINE L1 7363 7471 -173 5 1724 240 35 0 0 chr3 149359996 149360025 -10239758 + (GA)n Simple_repeat Simple_repeat 2 30 0 5 1724 297 302 35 35 chr3 149360025 149360141 -10239642 + Lx9 LINE L1 7472 7592 -52 5 1724 428 258 10 2 chr3 149360373 149360476 -10239307 - B4A SINE B4 -191 101 1 5 1724 471 217 0 0 chr3 149360490 149360596 -10239187 + (CATA)n Simple_repeat Simple_repeat 3 108 0 5 1724 549 0 0 0 chr3 149362821 149362882 -10236901 + (TTATA)n Simple_repeat Simple_repeat 5 65 0 5 1724 212 264 0 11 chr3 149363276 149363364 -10236419 + CT-rich Low_complexity Low_complexity 1 87 0 5 1724 34 65 0 0 chr3 149363846 149363908 -10235875 + AT_rich Low_complexity Low_complexity 1 62 0 5 1724 327 276 8 30 chr3 149364814 149364945 -10234838 + (TA)n Simple_repeat Simple_repeat 1 128 0 5 1724 415 326 5 73 chr3 149365105 149365297 -10234486 + B3A SINE B2 2 180 -18 5 1724 24 32 0 0 chr3 149365324 149365355 -10234428 + AT_rich Low_complexity Low_complexity 1 31 0 5 1724 21 36 0 0 chr3 149365558 149365586 -10234197 + AT_rich Low_complexity Low_complexity 1 28 0 5 1724 187 286 0 39 chr3 149365624 149365675 -10234108 - L2c LINE L2 -72 3315 3267 5 1724 447 68 0 0 chr3 149366009 149366068 -10233715 + (TCCC)n Simple_repeat Simple_repeat 4 62 0 5 1724 264 329 0 12 chr3 149366069 149366152 -10233631 + CT-rich Low_complexity Low_complexity 1 82 0 5 1724 499 305 106 11 chr3 149369448 149369637 -10230146 - ID_B1 SINE B4 -17 207 1 5 1724 437 34 17 0 chr3 149369857 149369916 -10229867 + (TCTA)n Simple_repeat Simple_repeat 4 63 0 5 1724 2450 41 2 249 chr3 149370829 149371344 -10228439 + RLTR10 LTR ERVK 1 388 -2 5 1724 7325 44 7 9 chr3 149371356 149372316 -10227467 + RLTR10-int LTR ERVK 41 998 -989 5 1724 292 287 31 8 chr3 149372380 149372510 -10227273 + RLTR10-int LTR ERVK 1462 1594 -5987 5 1724 8231 25 0 1 chr3 149372592 149373590 -10226193 + RLTR10-int LTR ERVK 990 1986 -1 5 1724 2450 41 2 249 chr3 149373590 149374105 -10225678 + RLTR10 LTR ERVK 1 388 -2 5 1724 334 293 0 42 chr3 149374634 149374730 -10225053 + PB1D7 SINE Alu 23 114 -6 5 1724 1013 66 73 0 chr3 149374741 149374878 -10224905 + B1_Mm SINE Alu 1 147 0 5 1724 322 338 74 25 chr3 149375388 149375591 -10224192 - MER20 DNA MER1_type 0 219 7 5 1724 201 94 0 0 chr3 149375822 149375854 -10223929 + (TTTC)n Simple_repeat Simple_repeat 2 33 0 5 1724 469 186 8 8 chr3 149375864 149375989 -10223794 + (TG)n Simple_repeat Simple_repeat 2 126 0 5 1724 523 348 81 14 chr3 149378837 149379134 -10220649 - ORR1E LTR MaLR -8 351 35 5 1724 22 56 0 0 chr3 149379534 149379570 -10220213 + AT_rich Low_complexity Low_complexity 1 36 0 5 1724 4670 163 67 12 chr3 149380095 149380950 -10218833 - RMER19B LTR ERVK 0 902 1 5 1724 290 301 132 0 chr3 149381054 149381190 -10218593 + MLT1C LTR MaLR 289 442 -25 5 1724 428 72 14 0 chr3 149381764 149381833 -10217950 + (TA)n Simple_repeat Simple_repeat 2 71 0 5 1724 3397 60 0 2 chr3 149381906 149382339 -10217444 + L1Md_F2 LINE L1 6151 6582 0 5 1724 21 36 0 0 chr3 149382402 149382430 -10217353 + AT_rich Low_complexity Low_complexity 1 28 0 5 1724 197 197 16 0 chr3 149384342 149384403 -10215380 + (TG)n Simple_repeat Simple_repeat 2 63 0 5 1724 664 341 57 4 chr3 149384937 149385192 -10214591 + B4 SINE B4 1 269 -23 5 1724 492 59 0 0 chr3 149385192 149385260 -10214523 + (CA)n Simple_repeat Simple_repeat 2 69 0 5 1724 372 43 0 0 chr3 149386459 149386505 -10213278 + (TG)n Simple_repeat Simple_repeat 2 47 0 5 1724 307 291 40 57 chr3 149386532 149386656 -10213127 - RSINE1 SINE B4 -43 122 1 5 1724 22 35 0 0 chr3 149386692 149386721 -10213062 + AT_rich Low_complexity Low_complexity 1 29 0 5 1724 414 0 0 0 chr3 149386912 149386958 -10212825 + (TC)n Simple_repeat Simple_repeat 1 46 0 5 1724 207 0 0 0 chr3 149386958 149386980 -10212803 + (CA)n Simple_repeat Simple_repeat 1 23 0 5 1724 449 342 73 69 chr3 149387414 149387659 -10212124 + MLT1H1 LTR MaLR 67 356 -239 5 1724 572 298 40 56 chr3 149389890 149390142 -10209641 + MLT1D LTR MaLR 21 268 -237 5 1724 236 390 17 8 chr3 149390177 149390296 -10209487 + MLT1D LTR MaLR 348 467 0 5 1724 189 107 0 0 chr3 149390408 149390436 -10209347 + (TTC)n Simple_repeat Simple_repeat 2 29 0 5 1724 891 39 0 135 chr3 149390465 149390613 -10209170 - L1_Mus2 LINE L1 0 6566 6439 5 1724 279 325 157 60 chr3 149391045 149391352 -10208431 - MLT2B3 LTR ERVL -11 543 3 5 1724 270 312 40 68 chr3 149391352 149391500 -10208283 - MTEb LTR MaLR -233 146 3 5 1724 222 250 11 116 chr3 149392567 149392662 -10207121 - B1F1 SINE Alu -62 87 3 5 1724 234 373 30 53 chr3 149392662 149392779 -10207004 - ID_B1 SINE B4 -106 118 5 5 1724 288 262 47 12 chr3 149393401 149393486 -10206297 + B1F SINE Alu 27 114 -35 5 1724 369 313 13 113 chr3 149393528 149393679 -10206104 + ID_B1 SINE B4 81 216 -8 5 1724 562 290 18 72 chr3 149393849 149394016 -10205767 + RSINE1 SINE B4 8 165 0 5 1724 30 59 0 0 chr3 149394730 149394781 -10205002 + AT_rich Low_complexity Low_complexity 1 51 0 5 1724 2241 231 29 4 chr3 149396038 149396550 -10203233 - Lx6 LINE L1 -9 7451 6927 5 1724 2262 216 111 48 chr3 149396567 149397262 -10202521 - Lx6 LINE L1 -583 6877 6139 5 1724 5626 207 49 6 chr3 149397246 149398580 -10201203 - Lx6 LINE L1 0 5880 4490 5 1724 252 318 92 60 chr3 149398936 149399217 -10200566 + L3 LINE CR1 4100 4389 -100 5 1724 1221 60 0 0 chr3 149400585 149400752 -10199031 + (TG)n Simple_repeat Simple_repeat 1 167 0 5 1724 6498 181 53 25 chr3 149400915 149402415 -10197368 - Lx5 LINE L1 -3 7047 5504 5 1724 2390 144 217 0 chr3 149402452 149403014 -10196769 + L1_Mur2 LINE L1 3168 3851 -2026 5 1724 1602 32 0 0 chr3 149403026 149403211 -10196572 - B2_Mm1a SINE B2 -8 185 1 5 1724 189 0 0 0 chr3 149403309 149403330 -10196453 + (A)n Simple_repeat Simple_repeat 1 21 0 5 1724 503 197 0 17 chr3 149403371 149403490 -10196293 + GA-rich Low_complexity Low_complexity 1 117 0 5 1724 290 367 86 31 chr3 149404092 149404348 -10195435 - LTR16B LTR ERVL 0 463 194 5 1724 21 36 0 0 chr3 149404844 149404872 -10194911 + AT_rich Low_complexity Low_complexity 1 28 0 5 1724 237 195 0 0 chr3 149405690 149405731 -10194052 + B1F1 SINE Alu 94 134 -15 5 1724 543 340 89 48 chr3 149406170 149406439 -10193344 + B4A SINE B4 11 290 -2 5 1724 549 0 0 0 chr3 149406489 149406550 -10193233 + (CA)n Simple_repeat Simple_repeat 2 62 0 5 1724 273 247 12 12 chr3 149407625 149407711 -10192072 + (TCTA)n Simple_repeat Simple_repeat 3 88 0 5 1724 600 111 0 0 chr3 149407718 149407817 -10191966 + (TATG)n Simple_repeat Simple_repeat 2 100 0 5 1724 492 62 0 0 chr3 149407817 149407880 -10191903 + (TCCG)n Simple_repeat Simple_repeat 1 64 0 5 1724 1163 102 0 6 chr3 149407880 149408058 -10191725 + (TCTA)n Simple_repeat Simple_repeat 4 180 0 5 1724 288 0 0 0 chr3 149408066 149408098 -10191685 + (TATG)n Simple_repeat Simple_repeat 1 32 0 5 1724 976 122 6 6 chr3 149408098 149408459 -10191324 + (TCTA)n Simple_repeat Simple_repeat 1 361 0 5 1724 1149 103 1 6 chr3 149408470 149409173 -10190610 + (TCTA)n Simple_repeat Simple_repeat 1 699 0 5 1724 460 162 10 20 chr3 149409908 149410009 -10189774 + C-rich Low_complexity Low_complexity 2 101 0 5 1724 420 111 0 0 chr3 149410008 149410071 -10189712 + (TTTC)n Simple_repeat Simple_repeat 3 65 0 5 1724 195 42 0 0 chr3 149411415 149411439 -10188344 + (TTG)n Simple_repeat Simple_repeat 1 24 0 5 1724 201 121 0 0 chr3 149411437 149411470 -10188313 + (TGG)n Simple_repeat Simple_repeat 1 33 0 6 1724 438 20 0 0 chr3 149411471 149411522 -10188261 + (TG)n Simple_repeat Simple_repeat 1 51 0 6 1724 24 32 0 0 chr3 149411983 149412014 -10187769 + AT_rich Low_complexity Low_complexity 1 31 0 6 1724 2201 130 33 33 chr3 149412188 149412577 -10187206 + Lx LINE L1 6250 6638 -16 6 1724 432 0 0 0 chr3 149412577 149412625 -10187158 + (GAA)n Simple_repeat Simple_repeat 2 49 0 6 1724 415 305 147 42 chr3 149413297 149413779 -10186004 - Arthur1 DNA Tip100 -22 3925 3393 6 1724 758 332 36 52 chr3 149413949 149414279 -10185504 - MTE2b LTR MaLR -54 325 1 6 1724 1499 176 66 27 chr3 149415665 149416101 -10183682 - RMER6C LTR ERVK -3 687 1 6 1724 1115 294 25 25 chr3 149416157 149416513 -10183270 + MTEa LTR MaLR 20 375 -4 6 1724 334 277 0 12 chr3 149416530 149416614 -10183169 - B4 SINE B4 -209 83 1 6 1724 603 0 0 0 chr3 149416623 149416690 -10183093 + (TTCC)n Simple_repeat Simple_repeat 4 70 0 6 1724 195 42 0 0 chr3 149416690 149416714 -10183069 + (TC)n Simple_repeat Simple_repeat 2 25 0 6 1724 246 105 0 0 chr3 149416772 149416810 -10182973 + (TTTA)n Simple_repeat Simple_repeat 3 40 0 6 1724 1105 263 144 12 chr3 149416819 149417146 -10182637 - MTD LTR MaLR 0 419 50 6 1724 582 191 0 0 chr3 149417149 149417243 -10182540 + B1_Mus2 SINE Alu 2 95 -52 6 1724 250 208 18 54 chr3 149417193 149417249 -10182534 + RLTR25A LTR ERVK 522 575 -528 6 1724 473 229 92 0 chr3 149417336 149417467 -10182316 - Lx6 LINE L1 -1337 6123 5981 6 1724 1471 301 33 99 chr3 149417471 149418132 -10181651 + Lx5 LINE L1 6191 6802 -248 6 1724 2306 203 163 28 chr3 149418132 149418781 -10181002 - RMER19A LTR ERVK 0 737 1 6 1724 1471 301 33 99 chr3 149418781 149418915 -10180868 + Lx5 LINE L1 6803 6933 -117 6 1724 792 191 35 9 chr3 149418949 149419127 -10180656 + RMER19A LTR ERVK 580 902 0 6 1724 776 206 0 11 chr3 149419298 149419480 -10180303 + CT-rich Low_complexity Low_complexity 1 180 0 6 1724 994 107 0 28 chr3 149419496 149419640 -10180143 - B1_Mus1 SINE Alu -6 142 3 6 1724 261 356 121 30 chr3 149420218 149420383 -10179400 + B4 SINE B4 50 229 -63 6 1725 372 22 0 0 chr3 149423446 149423491 -10176292 + (CA)n Simple_repeat Simple_repeat 1 45 0 6 1725 8963 52 1 1 chr3 149424848 149426752 -10173031 - L1Md_F2 LINE L1 -1 6581 4679 6 1725 450 0 0 0 chr3 149426847 149426897 -10172886 + (TAA)n Simple_repeat Simple_repeat 2 51 0 6 1725 210 71 0 0 chr3 149427060 149427088 -10172695 + (A)n Simple_repeat Simple_repeat 1 28 0 6 1725 206 392 9 29 chr3 149430130 149430235 -10169548 - MIRb SINE MIR 0 268 166 6 1725 245 353 49 89 chr3 149432150 149432374 -10167409 + L2a LINE L2 1210 1424 -1995 6 1725 681 305 44 90 chr3 149432620 149432941 -10166842 - MTE2a LTR MaLR 0 379 74 6 1725 4506 62 0 10 chr3 149432941 149433548 -10166235 - L1_Mus3 LINE L1 -424 6214 5614 6 1725 2714 110 5 10 chr3 149433548 149433886 -10165897 + L1_Mus3 LINE L1 6228 6564 -74 6 1725 315 0 0 0 chr3 149433886 149433921 -10165862 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 6 1725 2714 110 5 10 chr3 149433921 149433995 -10165788 + L1_Mus3 LINE L1 6565 6638 0 6 1725 23 0 0 0 chr3 149434013 149434036 -10165747 + AT_rich Low_complexity Low_complexity 1 23 0 6 1725 538 337 16 21 chr3 149434134 149434325 -10165458 - MER2 DNA MER2_type -40 305 116 6 1725 229 332 68 78 chr3 149434534 149434753 -10165030 + MLT1A1 LTR MaLR 1 217 -191 6 1725 257 320 165 34 chr3 149434954 149435452 -10164331 + L2a LINE L2 1851 2413 -1006 6 1725 213 39 0 0 chr3 149435731 149435757 -10164026 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 6 1725 239 349 89 55 chr3 149435770 149436095 -10163688 + L2a LINE L2 3088 3423 -3 6 1725 539 257 35 35 chr3 149436412 149436610 -10163173 - LTR37A LTR ERV1 -4 422 225 6 1725 425 333 83 16 chr3 149438018 149438210 -10161573 + B3 SINE B2 5 209 -7 6 1725 1018 198 271 19 chr3 149438774 149439140 -10160643 + Lx2B LINE L1 6542 6999 -1 6 1725 512 246 18 0 chr3 149439453 149439563 -10160220 + ORR1E LTR MaLR 1 112 -247 6 1725 10491 158 8 33 chr3 149439570 149442510 -10157273 + Lx2 LINE L1 3791 6645 -352 6 1725 1438 137 0 0 chr3 149442512 149442731 -10157052 + Lx2 LINE L1 6779 6997 0 6 1725 23 68 0 0 chr3 149443017 149443061 -10156722 + AT_rich Low_complexity Low_complexity 1 44 0 6 1725 743 186 6 0 chr3 149443233 149443389 -10156394 + GA-rich Low_complexity Low_complexity 3 159 0 6 1725 256 161 0 31 chr3 149443411 149443475 -10156308 + GA-rich Low_complexity Low_complexity 1 62 0 6 1725 450 0 0 0 chr3 149444133 149444183 -10155600 + (TC)n Simple_repeat Simple_repeat 2 51 0 6 1725 250 306 78 39 chr3 149444313 149444442 -10155341 - LTR16E1 LTR ERVL -3 535 402 6 1725 240 316 93 22 chr3 149444992 149445131 -10154652 + MIRb SINE MIR 88 236 -32 6 1725 186 43 0 0 chr3 149445317 149445340 -10154443 + (TTCTCC)n Simple_repeat Simple_repeat 3 25 0 6 1725 1062 78 0 16 chr3 149445343 149445526 -10154257 + (TCC)n Simple_repeat Simple_repeat 1 180 0 6 1725 267 159 0 0 chr3 149445528 149445544 -10154239 + polypyrimidine Low_complexity Low_complexity 49 64 0 6 1725 1100 79 0 6 chr3 149445544 149445723 -10154060 + (TCC)n Simple_repeat Simple_repeat 3 180 0 6 1725 267 159 0 0 chr3 149445723 149445769 -10154014 + CT-rich Low_complexity Low_complexity 3 48 0 6 1725 267 355 9 26 chr3 149446273 149446386 -10153397 + MIRb SINE MIR 128 238 -30 6 1725 740 191 22 0 chr3 149446394 149446530 -10153253 + ID_B1 SINE B4 86 224 0 6 1725 22 0 0 0 chr3 149446738 149446760 -10153023 + AT_rich Low_complexity Low_complexity 1 22 0 6 1725 2502 20 3 0 chr3 149447605 149447898 -10151885 - L1Md_A LINE L1 0 6582 6289 6 1725 184 288 16 33 chr3 149447961 149448022 -10151761 - MIRc SINE MIR -143 125 66 6 1725 212 127 27 53 chr3 149450197 149450272 -10149511 + (TCTCTG)n Simple_repeat Simple_repeat 2 74 0 6 1725 274 324 83 7 chr3 149451602 149451792 -10147991 + MIRb SINE MIR 56 262 0 6 1725 3008 66 10 8 chr3 149452612 149453007 -10146776 - MTA_Mm LTR MaLR 0 396 1 6 1725 21 0 0 0 chr3 149453722 149453743 -10146040 + AT_rich Low_complexity Low_complexity 1 21 0 6 1725 3708 91 25 0 chr3 149453970 149454497 -10145286 + L1_Mus4 LINE L1 6091 6630 -6 6 1725 293 382 61 0 chr3 149454585 149454750 -10145033 + LTR79 LTR ERVL 13 187 -340 6 1725 714 287 69 7 chr3 149455427 149455718 -10144065 - MLT1-int LTR MaLR -1034 337 29 6 1725 826 201 119 10 chr3 149455831 149456032 -10143751 + URR1A DNA MER1_type 1 223 -3 6 1725 222 37 0 0 chr3 149456421 149456448 -10143335 + (CA)n Simple_repeat Simple_repeat 2 28 0 6 1725 3016 277 25 14 chr3 149456458 149457323 -10142460 + Lx7 LINE L1 6489 7363 -333 6 1725 294 218 75 75 chr3 149458456 149458550 -10141233 + RMER15 LTR ERVL 338 431 -144 6 1725 25 31 0 0 chr3 149460047 149460079 -10139704 + AT_rich Low_complexity Low_complexity 1 32 0 6 1725 874 325 43 13 chr3 149462084 149462432 -10137351 + MLT2D LTR ERVL 15 522 -37 6 1725 672 310 92 37 chr3 149462440 149462765 -10137018 + MER2 DNA MER2_type 3 345 0 6 1725 2907 31 34 6 chr3 149462782 149463137 -10136646 + RLTR10B2 LTR ERVK 1 365 0 6 1725 857 175 6 0 chr3 149463812 149463983 -10135800 + (TA)n Simple_repeat Simple_repeat 1 172 0 6 1725 377 44 0 0 chr3 149463983 149464028 -10135755 + (CA)n Simple_repeat Simple_repeat 1 45 0 6 1725 1247 274 122 31 chr3 149464482 149465523 -10134260 - L1M4 LINE L1 -552 5626 4482 6 1725 309 332 105 68 chr3 149465868 149466295 -10133488 - L1M4 LINE L1 -1916 4230 3788 6 1725 224 149 0 21 chr3 149466502 149466550 -10133233 + A-rich Low_complexity Low_complexity 1 47 0 6 1725 270 0 0 0 chr3 149467613 149467643 -10132140 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 6 1725 21 0 0 0 chr3 149467967 149467988 -10131795 + AT_rich Low_complexity Low_complexity 1 21 0 6 1725 862 168 7 27 chr3 149469603 149469750 -10130033 - B1_Mur4 SINE Alu -1 149 6 6 1725 2950 35 0 0 chr3 149469910 149470255 -10129528 - L1Md_F2 LINE L1 -409 6173 5829 6 1725 2983 45 16 5 chr3 149470255 149470634 -10129149 + L1Md_F2 LINE L1 6200 6582 0 6 1725 433 340 103 44 chr3 149471011 149471282 -10128501 + B4 SINE B4 4 290 -2 6 1725 273 159 0 0 chr3 149471307 149471370 -10128413 + (CA)n Simple_repeat Simple_repeat 2 64 0 6 1725 1130 108 11 0 chr3 149471680 149471856 -10127927 + (TTTC)n Simple_repeat Simple_repeat 3 180 0 6 1725 1099 80 6 12 chr3 149471860 149472025 -10127758 + (TTTCC)n Simple_repeat Simple_repeat 3 166 0 6 1725 182 118 29 0 chr3 149473046 149473080 -10126703 + (TAAA)n Simple_repeat Simple_repeat 3 37 0 6 1725 591 307 33 43 chr3 149474676 149474887 -10124896 + B3 SINE B2 2 210 -6 6 1725 574 297 51 15 chr3 149474976 149475249 -10124534 + L1MA4A LINE L1 5474 5756 -541 6 1725 237 234 160 0 chr3 149475267 149475361 -10124422 + L1MA4A LINE L1 5822 5930 -373 6 1725 22 0 0 0 chr3 149475365 149475387 -10124396 + AT_rich Low_complexity Low_complexity 1 22 0 6 1725 782 247 11 11 chr3 149475783 149475971 -10123812 + ORR1D1 LTR MaLR 187 374 0 6 1725 397 316 19 26 chr3 149475973 149476129 -10123654 - MLT1B LTR MaLR -235 155 1 6 1725 469 345 92 71 chr3 149476136 149476473 -10123310 - MLT1E1 LTR MaLR -3 650 306 6 1725 187 236 110 3 chr3 149477057 149477116 -10122667 - L2a LINE L2 -94 3332 3250 6 1725 330 319 171 24 chr3 149477614 149477784 -10121999 + MER58C DNA MER1_type 12 206 -9 6 1725 216 0 0 0 chr3 149478499 149478523 -10121260 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 6 1725 31 26 0 0 chr3 149478612 149478650 -10121133 + AT_rich Low_complexity Low_complexity 1 38 0 6 1725 540 303 73 29 chr3 149478849 149479124 -10120659 - B4A SINE B4 -4 288 2 6 1725 951 118 7 27 chr3 149480675 149480823 -10118960 - B1_Mus1 SINE Alu -1 147 3 6 1725 209 231 0 0 chr3 149481699 149481751 -10118032 - MIR SINE MIR -127 135 84 6 1725 363 23 0 0 chr3 149482496 149482540 -10117243 + (CA)n Simple_repeat Simple_repeat 2 45 0 6 1725 225 260 0 0 chr3 149482692 149482769 -10117014 + (CATATA)n Simple_repeat Simple_repeat 4 80 0 6 1725 641 47 12 0 chr3 149483170 149483255 -10116528 + (TTTC)n Simple_repeat Simple_repeat 3 88 0 6 1725 243 395 58 36 chr3 149484120 149484259 -10115524 + MIR3 SINE MIR 8 149 -59 7 1725 623 300 35 0 chr3 149484653 149484823 -10114960 - B3 SINE B2 -40 176 1 7 1725 295 355 123 14 chr3 149485707 149485927 -10113856 - MIRb SINE MIR -12 256 13 7 1725 183 341 109 11 chr3 149486011 149486186 -10113597 - L2c LINE L2 -2 3385 3194 7 1725 225 290 38 48 chr3 149487209 149487314 -10112469 - MLT1A1 LTR MaLR -6 402 299 7 1725 333 0 0 0 chr3 149487344 149487381 -10112402 + (CA)n Simple_repeat Simple_repeat 2 38 0 7 1725 492 18 0 0 chr3 149487381 149487437 -10112346 + (GA)n Simple_repeat Simple_repeat 2 58 0 7 1725 205 186 27 67 chr3 149487706 149487781 -10112002 + CT-rich Low_complexity Low_complexity 3 74 0 7 1725 198 128 0 0 chr3 149487832 149487871 -10111912 + (T)n Simple_repeat Simple_repeat 1 39 0 7 1725 21 0 0 0 chr3 149488211 149488232 -10111551 + AT_rich Low_complexity Low_complexity 1 21 0 7 1725 253 344 0 11 chr3 149490103 149490197 -10109586 + CT-rich Low_complexity Low_complexity 4 96 0 7 1725 315 0 0 0 chr3 149490251 149490286 -10109497 + (TG)n Simple_repeat Simple_repeat 2 36 0 7 1725 1905 157 83 0 chr3 149490900 149491251 -10108532 - L1_Mur2 LINE L1 -674 5203 4824 7 1725 6846 119 28 3 chr3 149491256 149492618 -10107165 + Lx LINE L1 5256 6654 0 7 1725 254 363 179 0 chr3 149492814 149492982 -10106801 + Tigger5 DNA MER2_type 7 204 -2202 7 1725 248 368 81 27 chr3 149493199 149493420 -10106363 - L3 LINE CR1 -138 4351 4119 7 1725 1000 139 0 16 chr3 149493896 149494079 -10105704 + CT-rich Low_complexity Low_complexity 1 180 0 7 1725 755 152 126 68 chr3 149494079 149494101 -10105682 - Lx4A LINE L1 -15 7043 7028 7 1725 2763 114 2 7 chr3 149494101 149494524 -10105259 - BGLII LTR ERVK 0 421 1 7 1725 755 152 126 68 chr3 149494524 149494682 -10105101 - Lx4A LINE L1 -31 7027 6851 7 1725 22 0 0 0 chr3 149494786 149494808 -10104975 + AT_rich Low_complexity Low_complexity 1 22 0 7 1725 718 288 14 19 chr3 149495265 149495481 -10104302 + ID_B1 SINE B4 1 215 -9 7 1725 2779 120 78 4 chr3 149497515 149497976 -10101807 + Lx2 LINE L1 6503 6997 0 7 1725 28 48 0 0 chr3 149498777 149498819 -10100964 + AT_rich Low_complexity Low_complexity 1 42 0 7 1725 693 342 75 8 chr3 149498839 149499104 -10100679 + B4 SINE B4 9 291 -1 7 1725 313 336 28 7 chr3 149501148 149501292 -10098491 + B1F SINE Alu 3 149 0 1 1725 180 0 0 0 chr3 149501324 149501344 -10098439 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 2 1725 1593 166 100 15 chr3 149501603 149501934 -10097849 + ORR1B2 LTR MaLR 1 359 -8 3 1725 591 318 26 108 chr3 149503153 149503460 -10096323 + B4A SINE B4 5 286 -6 4 1725 186 43 0 0 chr3 149503485 149503508 -10096275 + (CA)n Simple_repeat Simple_repeat 2 24 0 5 1725 530 29 15 0 chr3 149503508 149503575 -10096208 + (GA)n Simple_repeat Simple_repeat 2 70 0 6 1725 21 0 0 0 chr3 149504954 149504975 -10094808 + AT_rich Low_complexity Low_complexity 1 21 0 7 1725 378 0 0 0 chr3 149506362 149506404 -10093379 + (TC)n Simple_repeat Simple_repeat 1 42 0 8 1725 420 20 0 0 chr3 149506442 149506491 -10093292 + (TG)n Simple_repeat Simple_repeat 1 49 0 9 1725 393 22 0 0 chr3 149507361 149507407 -10092376 + (GA)n Simple_repeat Simple_repeat 2 47 0 1 1725 342 0 0 0 chr3 149507407 149507444 -10092339 + (TG)n Simple_repeat Simple_repeat 2 39 0 1 1725 222 128 0 0 chr3 149507796 149507835 -10091948 + (T)n Simple_repeat Simple_repeat 1 39 0 1 1725 186 43 0 0 chr3 149507968 149507991 -10091792 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 1 1725 407 169 143 16 chr3 149509348 149509474 -10090309 + Lx4A LINE L1 6908 7049 -9 1 1725 380 283 26 9 chr3 149509719 149509833 -10089950 - Charlie4z DNA MER1_type -51 116 1 1 1725 322 302 5 72 chr3 149509947 149510140 -10089643 - MER20 DNA MER1_type -5 214 35 1 1725 202 337 30 10 chr3 149510805 149510904 -10088879 + CT-rich Low_complexity Low_complexity 4 104 0 1 1725 347 228 54 36 chr3 149511302 149511505 -10088278 - L1ME3B LINE L1 -368 5872 5665 1 1725 180 0 0 0 chr3 149511522 149511542 -10088241 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 1 1725 503 311 0 18 chr3 149511546 149511713 -10088070 - RSINE1 SINE B4 0 165 2 2 1725 210 156 0 0 chr3 149511897 149511942 -10087841 + (TCTCTG)n Simple_repeat Simple_repeat 4 48 0 2 1725 759 289 127 19 chr3 149511943 149512214 -10087569 - MTD LTR MaLR -57 362 67 2 1725 523 276 87 20 chr3 149512449 149512645 -10087138 + ID_B1 SINE B4 4 212 -12 2 1725 351 0 0 0 chr3 149512804 149512843 -10086940 + (TG)n Simple_repeat Simple_repeat 1 39 0 2 1725 587 326 45 16 chr3 149512861 149513073 -10086710 - B3A SINE B2 -13 203 1 2 1725 185 159 159 0 chr3 149513307 149513351 -10086432 - L3 LINE CR1 -2355 2134 2084 2 1725 735 33 0 0 chr3 149513727 149513817 -10085966 + (TC)n Simple_repeat Simple_repeat 1 90 0 2 1725 243 61 0 0 chr3 149515429 149515462 -10084321 + (TCTCTG)n Simple_repeat Simple_repeat 3 35 0 2 1725 208 351 0 0 chr3 149515465 149515542 -10084241 + (TATATG)n Simple_repeat Simple_repeat 6 82 0 2 1725 415 337 53 32 chr3 149515547 149515829 -10083954 - B4A SINE B4 -4 288 1 3 1725 350 262 28 37 chr3 149516128 149516235 -10083548 - PB1D7 SINE Alu -12 108 3 3 1725 3260 177 25 16 chr3 149516238 149516846 -10082937 + RLTR17 LTR ERVK 1 613 -79 3 1725 187 240 20 20 chr3 149517654 149517705 -10082078 - L3 LINE CR1 -2281 2208 2158 3 1725 23 0 0 0 chr3 149518217 149518240 -10081543 + AT_rich Low_complexity Low_complexity 1 23 0 3 1725 2788 63 11 3 chr3 149518602 149518969 -10080814 + L1_Mus1 LINE L1 6196 6565 -2 3 1725 180 0 0 0 chr3 149519113 149519133 -10080650 + (CA)n Simple_repeat Simple_repeat 2 21 0 3 1725 251 326 88 7 chr3 149519248 149519384 -10080399 - LTR90A LTR LTR -28 948 802 3 1725 360 64 0 0 chr3 149519656 149519703 -10080080 + (TTTA)n Simple_repeat Simple_repeat 3 49 0 3 1725 426 333 14 21 chr3 149519839 149519983 -10079800 - RSINE1 SINE B4 -21 144 2 3 1725 254 254 0 17 chr3 149520741 149520801 -10078982 + B4 SINE B4 2 60 -232 4 1725 415 181 20 60 chr3 149520839 149520939 -10078844 - MTC LTR MaLR -4 417 322 4 1725 821 192 71 12 chr3 149520932 149521101 -10078682 - MTC LTR MaLR -242 179 1 4 1725 932 188 46 63 chr3 149521101 149521385 -10078398 - MTC-int LTR MaLR 0 1258 980 4 1725 875 149 28 0 chr3 149521399 149521540 -10078243 + B1_Mur4 SINE Alu 6 150 0 4 1725 4706 210 43 7 chr3 149521551 149522497 -10077286 - MTC-int LTR MaLR -273 985 6 4 1725 1111 143 84 19 chr3 149522507 149522721 -10077062 - MTC LTR MaLR -6 415 188 4 1725 446 200 9 95 chr3 149522697 149522813 -10076970 - ORR1A3-int LTR MaLR -752 1211 1106 4 1725 3496 266 86 6 chr3 149522831 149523830 -10075953 + Lx6 LINE L1 6382 7460 0 4 1725 352 155 167 49 chr3 149523832 149523934 -10075849 - MTC LTR MaLR -301 120 7 4 1725 514 210 20 0 chr3 149523925 149524025 -10075758 + ORR1D1 LTR MaLR 273 374 0 4 1725 333 354 38 33 chr3 149524348 149524561 -10075222 + RMER15 LTR ERVL 347 560 -15 4 1725 620 264 73 19 chr3 149526664 149526869 -10072914 + B3 SINE B2 1 216 0 4 1725 363 297 159 17 chr3 149527105 149527406 -10072377 + L1MA9 LINE L1 5785 6128 -184 4 1725 396 0 0 0 chr3 149527422 149527466 -10072317 + (CA)n Simple_repeat Simple_repeat 2 45 0 4 1725 228 134 14 82 chr3 149527466 149527539 -10072244 + (TA)n Simple_repeat Simple_repeat 1 68 0 5 1725 387 60 0 0 chr3 149527978 149528028 -10071755 + (TAAAA)n Simple_repeat Simple_repeat 1 50 0 5 1725 196 100 0 48 chr3 149528800 149528842 -10070941 + (TTTTC)n Simple_repeat Simple_repeat 2 41 0 5 1725 396 0 0 0 chr3 149530219 149530263 -10069520 + (T)n Simple_repeat Simple_repeat 1 44 0 5 1725 455 301 89 8 chr3 149530815 149530939 -10068844 - RSINE1 SINE B4 -25 140 7 5 1725 22 0 0 0 chr3 149530942 149530964 -10068819 + AT_rich Low_complexity Low_complexity 1 22 0 5 1725 35 24 0 0 chr3 149531946 149531988 -10067795 + AT_rich Low_complexity Low_complexity 1 42 0 5 1725 35 0 0 0 chr3 149532069 149532104 -10067679 + AT_rich Low_complexity Low_complexity 1 35 0 5 1725 3223 50 0 0 chr3 149532111 149532508 -10067275 - L1_Mus1 LINE L1 0 6567 6171 5 1725 26 0 0 0 chr3 149533220 149533246 -10066537 + AT_rich Low_complexity Low_complexity 1 26 0 5 1725 329 358 30 7 chr3 149533559 149533694 -10066089 + ID_B1 SINE B4 87 224 0 6 1725 29 84 0 0 chr3 149534351 149534422 -10065361 + AT_rich Low_complexity Low_complexity 1 71 0 6 1725 484 314 206 70 chr3 149534730 149535059 -10064724 + MTEa LTR MaLR 5 377 -2 6 1725 238 349 46 0 chr3 149535063 149535172 -10064611 - MIRb SINE MIR -128 140 27 6 1725 340 341 22 0 chr3 149535505 149535596 -10064187 + RSINE1 SINE B4 61 153 -12 6 1725 450 0 0 0 chr3 149535608 149535658 -10064125 + (CA)n Simple_repeat Simple_repeat 1 50 0 6 1725 203 349 16 0 chr3 149536129 149536192 -10063591 + L2b LINE L2 3308 3371 -4 6 1725 2459 68 75 0 chr3 149536805 149537127 -10062656 + ORR1A1 LTR MaLR 1 346 0 6 1725 249 287 39 29 chr3 149537820 149537924 -10061859 + MLT2B3 LTR ERVL 10 114 -440 6 1725 224 59 19 56 chr3 149540374 149540428 -10059355 + (CAAAAA)n Simple_repeat Simple_repeat 2 53 0 6 1725 1520 206 78 48 chr3 149540437 149540850 -10058933 + RLTR28 LTR ERVL 83 507 -17 7 1725 895 287 139 36 chr3 149540935 149542491 -10057292 - L1M4c LINE L1 -3791 2591 769 7 1725 425 260 24 0 chr3 149542491 149542614 -10057169 + Lx7 LINE L1 6977 7102 -594 7 1725 237 200 68 41 chr3 149542729 149542802 -10056981 + Lx7 LINE L1 7060 7134 -562 7 1725 1284 220 33 3 chr3 149542782 149543083 -10056700 + Lx7 LINE L1 7060 7369 -327 7 1725 209 209 0 43 chr3 149543092 149543162 -10056621 + T-rich Low_complexity Low_complexity 6 72 0 7 1725 220 147 81 0 chr3 149543184 149543320 -10056463 + (TA)n Simple_repeat Simple_repeat 1 147 0 7 1725 444 210 17 22 chr3 149543362 149543542 -10056241 + (TA)n Simple_repeat Simple_repeat 2 180 0 7 1725 658 209 68 31 chr3 149543550 149543772 -10056011 + Lx7 LINE L1 7405 7634 -62 7 1725 661 77 2 49 chr3 149543772 149543907 -10055876 + MT-int LTR MaLR 927 1140 -118 7 1725 563 283 29 91 chr3 149544586 149544632 -10055151 - B3 SINE B2 -19 197 161 7 1725 387 41 0 0 chr3 149544632 149544681 -10055102 + (TG)n Simple_repeat Simple_repeat 1 49 0 7 1725 563 283 29 91 chr3 149544681 149544844 -10054939 - B3 SINE B2 -56 160 1 7 1725 250 273 178 19 chr3 149544876 149545145 -10054638 - L1M5 LINE L1 -991 5155 4844 7 1725 995 295 55 12 chr3 149545295 149545621 -10054162 - MLT1E3 LTR MaLR 0 624 285 8 1725 193 111 18 36 chr3 149545974 149546030 -10053753 + A-rich Low_complexity Low_complexity 2 56 0 8 1725 203 0 37 0 chr3 149546393 149546420 -10053363 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 8 1725 417 39 0 0 chr3 149546461 149546512 -10053271 + (TA)n Simple_repeat Simple_repeat 1 51 0 8 1725 189 0 0 0 chr3 149547198 149547219 -10052564 + (CA)n Simple_repeat Simple_repeat 2 22 0 8 1725 365 271 112 22 chr3 149547242 149547465 -10052318 - L1M5 LINE L1 -2689 3457 3215 7 1725 300 111 0 0 chr3 149549153 149549198 -10050585 + (TG)n Simple_repeat Simple_repeat 2 46 0 8 1725 734 251 115 20 chr3 149549541 149549965 -10049818 - Lx7 LINE L1 -1771 5925 5438 8 1725 198 26 24 49 chr3 149550300 149550341 -10049442 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 8 1726 485 294 65 30 chr3 149553890 149554226 -10045557 + L1M2 LINE L1 3399 3746 -2397 8 1726 301 339 179 8 chr3 149554296 149554531 -10045252 - MER67B LTR ERV1 -362 299 25 8 1726 376 309 97 69 chr3 149554585 149554869 -10044914 + MLT1A1 LTR MaLR 59 390 -18 9 1726 773 275 24 0 chr3 149556202 149556409 -10043374 + B3 SINE B2 1 212 -4 9 1726 583 287 13 13 chr3 149557836 149557995 -10041788 - B4A SINE B4 0 292 134 9 1726 12105 49 2 2 chr3 149557995 149560211 -10039572 - L1Md_F2 LINE L1 -15 6567 4352 9 1726 378 222 37 0 chr3 149560231 149560324 -10039459 - B4 SINE B4 -192 100 5 9 1726 201 133 0 0 chr3 149560684 149560714 -10039069 + (CCA)n Simple_repeat Simple_repeat 3 32 0 9 1726 482 70 14 0 chr3 149560775 149560846 -10038937 + (CA)n Simple_repeat Simple_repeat 2 73 0 9 1726 22 35 0 0 chr3 149562492 149562521 -10037262 + AT_rich Low_complexity Low_complexity 1 29 0 9 1726 25 51 0 0 chr3 149563816 149563855 -10035928 + AT_rich Low_complexity Low_complexity 1 39 0 9 1726 1063 116 7 0 chr3 149566024 149566171 -10033612 - B1_Mus1 SINE Alu 0 148 1 9 1726 23 33 0 0 chr3 149566178 149566208 -10033575 + AT_rich Low_complexity Low_complexity 1 30 0 9 1726 261 336 69 75 chr3 149566669 149567016 -10032767 + LTR37B LTR ERV1 59 403 -65 1 1726 1969 258 79 61 chr3 149567016 149567793 -10031990 - L1_Rod LINE L1 -1174 4673 3884 1 1726 221 0 0 33 chr3 149567793 149567823 -10031960 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1 1726 1969 258 79 61 chr3 149567823 149567903 -10031880 - L1_Rod LINE L1 -1964 3883 3801 1 1726 1422 219 137 3 chr3 149567905 149568089 -10031694 + MTC LTR MaLR 5 201 -220 1 1726 324 0 0 0 chr3 149568089 149568125 -10031658 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 1 1726 1422 219 137 3 chr3 149568125 149568298 -10031485 + MTC LTR MaLR 202 409 -12 1 1726 464 258 153 37 chr3 149568371 149568560 -10031223 + Lx9 LINE L1 6306 6516 -1128 1 1726 1119 56 12 18 chr3 149568771 149568934 -10030849 + L1Md_F2 LINE L1 6417 6578 -4 1 1726 564 97 0 0 chr3 149569390 149569483 -10030300 + (GA)n Simple_repeat Simple_repeat 2 94 0 1 1726 288 0 0 0 chr3 149569936 149569968 -10029815 + (TAA)n Simple_repeat Simple_repeat 3 34 0 1 1726 304 299 40 27 chr3 149570538 149570686 -10029097 - L1MC LINE L1 -2055 5827 5678 1 1726 21 71 0 0 chr3 149571811 149571853 -10027930 + AT_rich Low_complexity Low_complexity 1 42 0 1 1726 26 0 0 0 chr3 149572217 149572243 -10027540 + AT_rich Low_complexity Low_complexity 1 26 0 1 1726 24 0 0 0 chr3 149572626 149572650 -10027133 + AT_rich Low_complexity Low_complexity 1 24 0 1 1726 244 369 36 23 chr3 149573235 149573454 -10026329 + MLT1J-int LTR MaLR 1 222 -1165 1 1726 619 274 118 5 chr3 149573934 149574121 -10025662 + B3 SINE B2 1 208 -8 1 1726 21 36 0 0 chr3 149575148 149575176 -10024607 + AT_rich Low_complexity Low_complexity 1 28 0 1 1726 204 135 62 18 chr3 149576134 149576247 -10023536 + (TA)n Simple_repeat Simple_repeat 2 119 0 1 1726 377 291 143 17 chr3 149576344 149576519 -10023264 - B3A SINE B2 -1 197 1 1 1726 183 238 0 23 chr3 149576753 149576796 -10022987 - L3 LINE CR1 -165 4324 4283 1 1726 287 155 45 9 chr3 149576834 149576945 -10022838 + (TCTA)n Simple_repeat Simple_repeat 4 118 0 1 1726 597 323 38 83 chr3 149577092 149577515 -10022268 - MTE2b LTR MaLR -2 417 2 1 1726 214 158 84 12 chr3 149578678 149578761 -10021022 + (TA)n Simple_repeat Simple_repeat 1 89 0 1 1726 300 281 79 0 chr3 149580190 149580329 -10019454 - MER121 Unknown Unknown -189 223 74 1 1726 23 54 0 0 chr3 149581665 149581702 -10018081 + AT_rich Low_complexity Low_complexity 1 37 0 1 1726 476 100 0 12 chr3 149582518 149582599 -10017184 + (TG)n Simple_repeat Simple_repeat 1 80 0 1 1726 181 339 43 9 chr3 149583541 149583657 -10016126 - MIRc SINE MIR -124 144 25 1 1726 524 29 14 0 chr3 149584167 149584237 -10015546 + (CA)n Simple_repeat Simple_repeat 2 72 0 1 1726 495 0 0 0 chr3 149584237 149584291 -10015492 + (GA)n Simple_repeat Simple_repeat 2 56 0 1 1726 279 71 0 0 chr3 149585313 149585355 -10014428 + (A)n Simple_repeat Simple_repeat 1 42 0 1 1726 37 23 0 0 chr3 149587991 149588035 -10011748 + AT_rich Low_complexity Low_complexity 1 44 0 1 1726 405 90 0 0 chr3 149588062 149588129 -10011654 + (CA)n Simple_repeat Simple_repeat 2 68 0 1 1726 660 26 0 0 chr3 149588255 149588333 -10011450 + (TC)n Simple_repeat Simple_repeat 2 79 0 1 1726 981 96 0 0 chr3 149588334 149588490 -10011293 + (TG)n Simple_repeat Simple_repeat 1 156 0 1 1726 290 350 90 72 chr3 149589547 149589882 -10009901 - ORR1E LTR MaLR -18 341 1 1 1726 712 151 0 14 chr3 149590301 149590449 -10009334 + (TCTA)n Simple_repeat Simple_repeat 3 148 0 1 1726 2054 139 9 0 chr3 149590916 149591239 -10008544 + ORR1A2 LTR MaLR 1 326 -1 1 1726 382 81 0 0 chr3 149591363 149591425 -10008358 + Lx LINE L1 6588 6649 -5 1 1726 186 191 0 0 chr3 149591436 149591483 -10008300 + A-rich Low_complexity Low_complexity 1 47 0 1 1726 219 302 23 23 chr3 149593033 149593121 -10006662 + (CATA)n Simple_repeat Simple_repeat 1 88 0 1 1726 254 326 83 42 chr3 149593438 149593630 -10006153 + L2b LINE L2 2932 3131 -244 1 1726 957 131 0 0 chr3 149594168 149594321 -10005462 + (TAGA)n Simple_repeat Simple_repeat 4 156 0 1 1726 515 336 59 60 chr3 149594501 149595106 -10004677 - MER90 LTR ERV1 0 614 2 1 1726 234 0 0 0 chr3 149595798 149595824 -10003959 + (CAA)n Simple_repeat Simple_repeat 2 27 0 1 1726 563 51 13 0 chr3 149596684 149596763 -10003020 + (TCTA)n Simple_repeat Simple_repeat 3 82 0 1 1726 742 325 92 44 chr3 149596774 149597112 -10002671 + MTEa LTR MaLR 1 354 -25 1 1726 519 60 0 0 chr3 149597322 149597389 -10002394 + (T)n Simple_repeat Simple_repeat 1 67 0 1 1726 375 113 0 0 chr3 149598605 149598676 -10001107 + (TC)n Simple_repeat Simple_repeat 2 72 0 1 1726 374 186 83 23 chr3 149599974 149600106 -9999677 - Lx9 LINE L1 0 7644 7505 1 1726 285 29 0 0 chr3 149600110 149600144 -9999639 + (GA)n Simple_repeat Simple_repeat 1 34 0 1 1726 824 196 164 16 chr3 149600203 149600447 -9999336 + Lx9 LINE L1 7130 7409 -235 1 1726 3366 65 0 0 chr3 149601782 149602214 -9997569 + L1Md_A LINE L1 6150 6581 -1 1 1726 330 294 139 62 chr3 149602658 149602981 -9996802 + L1MCc LINE L1 84 431 -5992 1 1726 198 0 0 0 chr3 149603107 149603129 -9996654 + (CAA)n Simple_repeat Simple_repeat 3 24 0 1 1726 363 320 0 0 chr3 149603291 149603391 -9996392 + MLT2B2 LTR ERVL 3 102 -413 1 1726 459 314 111 11 chr3 149603424 149603695 -9996088 + MLT1A1 LTR MaLR 18 315 -93 1 1726 22 0 0 0 chr3 149603807 149603829 -9995954 + AT_rich Low_complexity Low_complexity 1 22 0 1 1726 1042 292 82 28 chr3 149604016 149604368 -9995415 + MTEa LTR MaLR 1 371 -8 1 1726 321 294 151 42 chr3 149604876 149605135 -9994648 + B4A SINE B4 3 289 -3 1 1726 621 252 180 34 chr3 149606303 149606588 -9993195 - MTEa LTR MaLR -61 358 1 1 1726 356 248 118 17 chr3 149607343 149607462 -9992321 - RMER1C Other Other -8 1334 1204 1 1726 531 0 0 0 chr3 149608599 149608658 -9991125 + (TG)n Simple_repeat Simple_repeat 2 60 0 1 1726 490 329 6 46 chr3 149608695 149608870 -9990913 - B4A SINE B4 -12 280 113 1 1726 827 323 88 27 chr3 149609708 149610004 -9989779 + MTEa LTR MaLR 23 336 -43 1 1726 255 320 46 69 chr3 149610352 149610483 -9989300 - MIRb SINE MIR -25 243 116 1 1726 26 30 0 0 chr3 149613107 149613140 -9986643 + AT_rich Low_complexity Low_complexity 1 33 0 1 1726 414 256 37 44 chr3 149615226 149615361 -9984422 - B1F SINE Alu -9 140 7 1 1726 224 158 34 34 chr3 149616916 149616975 -9982808 + (CAAA)n Simple_repeat Simple_repeat 2 60 0 1 1726 294 106 0 0 chr3 149617026 149617073 -9982710 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 1726 277 380 40 80 chr3 149617098 149617347 -9982436 - B4 SINE B4 -53 239 1 1 1726 560 303 5 58 chr3 149619309 149619498 -9980285 - B3A SINE B2 -17 181 3 1 1726 216 186 0 0 chr3 149619516 149619559 -9980224 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 1726 756 61 0 0 chr3 149619573 149619671 -9980112 + (TA)n Simple_repeat Simple_repeat 1 98 0 1 1726 22 70 0 0 chr3 149619707 149619750 -9980033 + AT_rich Low_complexity Low_complexity 1 43 0 1 1726 663 129 0 0 chr3 149621362 149621494 -9978289 + (TC)n Simple_repeat Simple_repeat 2 133 0 1 1726 428 292 66 66 chr3 149621978 149622205 -9977578 - MER31B LTR ERV1 -234 232 6 1 1726 582 63 0 0 chr3 149624450 149624529 -9975254 + (CA)n Simple_repeat Simple_repeat 2 80 0 1 1726 4610 45 4 0 chr3 149624860 149625419 -9974364 + L1Md_F2 LINE L1 5954 6514 -68 1 1726 431 339 63 76 chr3 149625430 149625890 -9973893 - L1M5 LINE L1 -2218 3928 3475 1 1726 1070 128 11 28 chr3 149625890 149626067 -9973716 + Lx3C LINE L1 5730 5903 -1073 1 1726 359 352 38 16 chr3 149626086 149626271 -9973512 - RMER30 DNA MER1_type -2 200 12 1 1726 2082 193 43 0 chr3 149626643 149627011 -9972772 - MTC LTR MaLR -37 384 1 1 1726 333 329 67 0 chr3 149628823 149628987 -9970796 - L1M5 LINE L1 -665 5508 5334 1 1726 25 31 0 0 chr3 149629858 149629890 -9969893 + AT_rich Low_complexity Low_complexity 1 32 0 1 1726 1204 238 42 65 chr3 149629905 149630215 -9969568 - RMER19B LTR ERVK -303 599 297 1 1726 206 340 190 15 chr3 149630447 149630716 -9969067 - L2 LINE L2 -841 2578 2263 1 1726 471 265 34 13 chr3 149630794 149630943 -9968840 - Lx9 LINE L1 0 5847 5696 1 1726 225 281 45 0 chr3 149630932 149631021 -9968762 + Lx9 LINE L1 5900 5992 -1652 1 1726 337 293 132 58 chr3 149631330 149631504 -9968279 + LTR33 LTR ERVL 309 495 -20 1 1726 253 337 32 0 chr3 149633137 149633232 -9966551 + MERVL_2A-int LTR ERVL 2192 2289 -3472 1 1726 1375 76 38 0 chr3 149633247 149633432 -9966351 + B2_Mm2 SINE B2 2 193 -2 1 1726 1573 201 82 3 chr3 149633496 149633825 -9965958 - ORR1B2 LTR MaLR -8 359 5 1 1726 227 103 57 29 chr3 149633838 149633908 -9965875 + A-rich Low_complexity Low_complexity 5 76 0 1 1726 38494 5 0 0 chr3 149634088 149639191 -9960592 + L1Md_A LINE L1 483 5586 -297 1 1726 9004 4 0 0 chr3 149639191 149640187 -9959596 + L1Md_A LINE L1 5587 6582 0 1 1726 311 0 0 25 chr3 149640862 149640902 -9958881 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 1 1726 237 65 0 0 chr3 149642046 149642077 -9957706 + (A)n Simple_repeat Simple_repeat 1 31 0 1 1726 3321 43 0 0 chr3 149642603 149642997 -9956786 - MTA_Mm LTR MaLR -2 394 1 1 1726 4663 97 47 12 chr3 149642997 149643689 -9956094 - MTA_Mm-int LTR MaLR 0 1098 379 1 1726 225 24 23 45 chr3 149643689 149643733 -9956050 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 1 1726 4663 97 47 12 chr3 149643733 149643783 -9956000 - MTA_Mm-int LTR MaLR -720 378 331 1 1726 6499 55 19 22 chr3 149643783 149644639 -9955144 - L1Md_F2 LINE L1 -77 6505 5653 1 1726 1624 58 0 30 chr3 149644640 149644871 -9954912 - MTA_Mm LTR MaLR -172 224 1 1 1726 934 262 122 10 chr3 149645130 149645434 -9954349 - MTD LTR MaLR -63 356 19 1 1726 26 0 0 0 chr3 149645999 149646025 -9953758 + AT_rich Low_complexity Low_complexity 1 26 0 1 1726 237 108 0 0 chr3 149646806 149646843 -9952940 + (CAA)n Simple_repeat Simple_repeat 3 39 0 2 1726 526 260 0 8 chr3 149647713 149647837 -9951946 - B1_Mur1 SINE Alu -5 144 22 2 1726 2450 43 0 7 chr3 149649287 149649589 -9950194 + L1Md_F2 LINE L1 6271 6570 -12 2 1726 182 37 37 0 chr3 149650258 149650285 -9949498 + (TC)n Simple_repeat Simple_repeat 2 29 0 2 1726 24 32 0 0 chr3 149651472 149651503 -9948280 + AT_rich Low_complexity Low_complexity 1 31 0 2 1726 382 322 110 16 chr3 149652649 149653230 -9946553 - L1MD3 LINE L1 -2094 5901 5260 2 1726 464 230 117 16 chr3 149653399 149653527 -9946256 + B1_Mur1 SINE Alu 3 143 -6 2 1726 349 332 80 48 chr3 149653652 149654230 -9945553 - L1MD3 LINE L1 -1254 4892 4270 2 1726 292 314 29 19 chr3 149654568 149654672 -9945111 - PB1D10 SINE Alu -1 116 12 2 1726 1635 240 79 11 chr3 149654699 149655142 -9944641 - RMER19C LTR ERVK 0 611 139 2 1726 495 48 0 0 chr3 149655720 149655782 -9944001 + (CA)n Simple_repeat Simple_repeat 1 62 0 2 1726 564 311 11 32 chr3 149656259 149656445 -9943338 + B3A SINE B2 16 197 -1 2 1726 428 0 19 0 chr3 149656700 149656752 -9943031 + (TG)n Simple_repeat Simple_repeat 2 54 0 2 1726 396 0 0 0 chr3 149656991 149657035 -9942748 + (TA)n Simple_repeat Simple_repeat 2 45 0 2 1726 726 223 9 72 chr3 149657184 149657406 -9942377 - Lx6 LINE L1 -11 7449 7242 2 1726 1460 271 16 23 chr3 149657404 149657789 -9941994 - Lx6 LINE L1 -25 7435 7054 2 1726 2494 81 0 31 chr3 149657800 149658156 -9941627 - L1Md_F2 LINE L1 -20 6562 6218 2 1726 1936 266 114 10 chr3 149658153 149658760 -9941023 - Lx6 LINE L1 -401 7059 6390 2 1726 1384 267 92 164 chr3 149658764 149659687 -9940096 - RMER1A Other Other -173 857 1 2 1726 1498 230 86 13 chr3 149659656 149660030 -9939753 - RMER1B Other Other -615 451 51 2 1726 13012 191 63 42 chr3 149660330 149660981 -9938802 - L1_Mur3 LINE L1 -81 5799 5126 2 1726 279 0 0 0 chr3 149660981 149661012 -9938771 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2 1726 13012 191 63 42 chr3 149661012 149663640 -9936143 - L1_Mur3 LINE L1 -755 5125 2453 2 1726 1103 211 26 16 chr3 149663645 149663949 -9935834 + L1_Mur3 LINE L1 1436 1742 -4138 2 1726 2592 196 36 65 chr3 149664373 149664754 -9935029 + L1_Mur3 LINE L1 1734 2083 -3797 2 1726 189 107 0 0 chr3 149664754 149664782 -9935001 + (CCA)n Simple_repeat Simple_repeat 1 28 0 2 1726 2592 196 36 65 chr3 149664782 149665153 -9934630 + L1_Mur3 LINE L1 2084 2464 -3416 2 1726 23 33 0 0 chr3 149665154 149665184 -9934599 + AT_rich Low_complexity Low_complexity 1 30 0 2 1726 180 152 0 0 chr3 149668747 149668780 -9931003 + (TA)n Simple_repeat Simple_repeat 1 33 0 2 1726 229 229 0 0 chr3 149668802 149668850 -9930933 + (TA)n Simple_repeat Simple_repeat 1 48 0 2 1726 291 113 32 16 chr3 149669291 149669354 -9930429 + (TA)n Simple_repeat Simple_repeat 2 65 0 2 1726 336 175 0 0 chr3 149669343 149669406 -9930377 + (TG)n Simple_repeat Simple_repeat 2 64 0 2 1726 495 90 0 0 chr3 149671285 149671363 -9928420 + (TA)n Simple_repeat Simple_repeat 2 79 0 2 1726 282 371 151 59 chr3 149672066 149672504 -9927279 - MLT1F1 LTR MaLR -8 561 84 2 1726 379 353 120 48 chr3 149672599 149672708 -9927075 - MLT1F1-int LTR MaLR -68 1421 1299 2 1726 189 0 0 0 chr3 149672708 149672729 -9927054 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 2 1726 379 353 120 48 chr3 149672729 149672994 -9926789 - MLT1F1-int LTR MaLR -191 1298 1020 2 1726 796 299 21 21 chr3 149673018 149673308 -9926475 + Lx6 LINE L1 7154 7443 -17 2 1726 205 171 0 0 chr3 149673524 149673559 -9926224 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 2 1726 24 53 0 0 chr3 149676445 149676483 -9923300 + AT_rich Low_complexity Low_complexity 1 38 0 2 1726 452 359 82 35 chr3 149677170 149677485 -9922298 + MLT1E3 LTR MaLR 289 618 -9 2 1726 295 268 35 35 chr3 149679372 149679488 -9920295 - MLT1B LTR MaLR -88 302 187 2 1726 327 164 0 0 chr3 149681449 149681510 -9918273 + (TG)n Simple_repeat Simple_repeat 2 62 0 2 1726 203 173 19 0 chr3 149683023 149683075 -9916708 + (TAA)n Simple_repeat Simple_repeat 2 54 0 2 1726 533 150 10 0 chr3 149683543 149683643 -9916140 + GA-rich Low_complexity Low_complexity 1 101 0 2 1726 498 33 0 0 chr3 149683694 149683754 -9916029 + (TCTCCC)n Simple_repeat Simple_repeat 2 61 0 2 1727 387 0 0 0 chr3 149686880 149686923 -9912860 + (TG)n Simple_repeat Simple_repeat 2 44 0 2 1727 407 306 112 51 chr3 149686956 149687331 -9912452 - L1MA5 LINE L1 -309 5991 5594 2 1727 266 314 133 6 chr3 149687591 149687764 -9912019 - Lx8 LINE L1 -55 7418 7224 2 1727 1198 47 0 0 chr3 149687762 149687911 -9911872 - L1Md_F2 LINE L1 -439 5444 5296 2 1727 1205 56 0 0 chr3 149687911 149688055 -9911728 + L1Md_F2 LINE L1 5442 5585 -298 2 1727 7575 56 23 3 chr3 149688056 149689019 -9910764 + L1Md_F2 LINE L1 5587 6568 -14 2 1727 396 0 0 0 chr3 149689062 149689106 -9910677 + (TC)n Simple_repeat Simple_repeat 1 44 0 2 1727 252 0 0 0 chr3 149689106 149689133 -9910650 + (CA)n Simple_repeat Simple_repeat 1 28 0 2 1727 575 340 81 15 chr3 149691285 149691482 -9908301 - B4A SINE B4 -1 291 82 2 1727 393 153 0 0 chr3 149691514 149691586 -9908197 + (TG)n Simple_repeat Simple_repeat 1 72 0 2 1727 210 71 0 0 chr3 149691585 149691613 -9908170 + (GA)n Simple_repeat Simple_repeat 1 28 0 2 1727 477 199 6 12 chr3 149691643 149691816 -9907967 + (TA)n Simple_repeat Simple_repeat 2 173 0 2 1727 225 0 0 0 chr3 149691816 149691841 -9907942 + (GA)n Simple_repeat Simple_repeat 2 26 0 2 1727 515 16 16 0 chr3 149692011 149692075 -9907708 + (TCTA)n Simple_repeat Simple_repeat 2 66 0 2 1727 407 154 0 0 chr3 149692075 149692140 -9907643 - L1_Mur3 LINE L1 -494 5383 5319 2 1727 702 185 0 8 chr3 149692132 149692263 -9907520 + Lx2 LINE L1 6750 6879 -118 2 1727 6547 151 37 7 chr3 149692269 149693847 -9905936 - Lx3C LINE L1 -240 6736 5119 2 1727 3872 147 44 11 chr3 149693816 149694526 -9905257 + Lx3C LINE L1 4411 5143 -734 2 1727 465 203 0 8 chr3 149694525 149694644 -9905139 - L1_Mur3 LINE L1 -584 5296 5179 2 1727 2533 245 41 7 chr3 149694653 149695212 -9904571 + Lx5 LINE L1 6395 6972 -78 2 1727 330 107 0 0 chr3 149695699 149695755 -9904028 + (TG)n Simple_repeat Simple_repeat 1 56 0 2 1727 21 36 0 0 chr3 149696232 149696260 -9903523 + AT_rich Low_complexity Low_complexity 1 28 0 2 1727 438 79 0 0 chr3 149696562 149696625 -9903158 + (TG)n Simple_repeat Simple_repeat 2 64 0 2 1727 362 333 21 42 chr3 149696626 149696770 -9903013 - RSINE1 SINE B4 -24 141 1 2 1727 832 219 304 19 chr3 149696810 149697169 -9902614 - RMER6B LTR ERVK 0 461 1 2 1727 1626 26 0 0 chr3 149698462 149698657 -9901126 + L1Md_A LINE L1 6387 6581 -1 2 1727 374 0 0 21 chr3 149699468 149699515 -9900268 + (TG)n Simple_repeat Simple_repeat 1 46 0 2 1727 257 299 11 54 chr3 149699556 149699648 -9900135 - B3 SINE B2 -107 88 1 2 1727 301 337 0 0 chr3 149700122 149700220 -9899563 + (CA)n Simple_repeat Simple_repeat 1 98 0 2 1727 750 95 0 0 chr3 149700564 149700690 -9899093 + (TC)n Simple_repeat Simple_repeat 1 126 0 2 1727 9609 103 9 44 chr3 149702157 149704772 -9895011 + Lx3A LINE L1 4436 6941 -40 2 1727 451 389 66 8 chr3 149706007 149706403 -9893380 - MER119 DNA MER1_type -164 419 1 2 1727 669 73 0 0 chr3 149707006 149707102 -9892681 + (TG)n Simple_repeat Simple_repeat 2 97 0 2 1727 284 148 37 0 chr3 149710248 149710302 -9889481 - Lx4B LINE L1 -1087 5971 5916 2 1727 4897 203 22 15 chr3 149710302 149711358 -9888425 + Lx4B LINE L1 5996 7058 0 2 1727 333 0 0 0 chr3 149712450 149712487 -9887296 + (TA)n Simple_repeat Simple_repeat 1 37 0 2 1727 22 70 0 0 chr3 149715227 149715270 -9884513 + AT_rich Low_complexity Low_complexity 1 43 0 2 1727 425 304 33 16 chr3 149715343 149715527 -9884256 - B3A SINE B2 -11 187 1 2 1727 764 57 9 0 chr3 149718584 149718690 -9881093 + (GA)n Simple_repeat Simple_repeat 2 108 0 2 1727 226 246 33 0 chr3 149718706 149718767 -9881016 + GA-rich Low_complexity Low_complexity 1 63 0 2 1727 468 0 0 0 chr3 149719050 149719102 -9880681 + (TC)n Simple_repeat Simple_repeat 1 52 0 2 1727 335 362 19 0 chr3 149723500 149723605 -9876178 - B4 SINE B4 -102 190 84 2 1727 324 70 0 0 chr3 149724398 149724441 -9875342 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 2 1727 1070 90 0 20 chr3 149724441 149724579 -9875204 - B1_Mus2 SINE Alu -11 136 1 2 1727 493 340 43 24 chr3 149724594 149724802 -9874981 - MTEa LTR MaLR -165 214 3 2 1727 486 0 0 0 chr3 149725105 149725159 -9874624 + (CA)n Simple_repeat Simple_repeat 1 54 0 2 1727 531 0 0 0 chr3 149725159 149725217 -9874566 + (GA)n Simple_repeat Simple_repeat 2 60 0 2 1727 3173 146 28 37 chr3 149725233 149725801 -9873982 + Lx3C LINE L1 6414 6976 0 2 1727 579 29 0 0 chr3 149726476 149726545 -9873238 + (GA)n Simple_repeat Simple_repeat 2 70 0 2 1727 25 65 0 0 chr3 149726959 149727005 -9872778 + AT_rich Low_complexity Low_complexity 1 46 0 2 1727 822 164 13 33 chr3 149727737 149727888 -9871895 - B1_Mus1 SINE Alu 0 148 1 2 1727 22 35 0 0 chr3 149727900 149727929 -9871854 + AT_rich Low_complexity Low_complexity 1 29 0 2 1727 1556 84 4 44 chr3 149728616 149728864 -9870919 + RLTR31B_Mm LTR ERVK 1 238 -319 2 1727 1746 76 0 33 chr3 149728895 149729140 -9870643 - L1_Mus2 LINE L1 -2 6564 6328 2 1727 2195 78 3 0 chr3 149729140 149729448 -9870335 + L1_Mus2 LINE L1 5807 6115 -451 2 1727 1479 162 8 16 chr3 149729448 149729699 -9870084 + RLTR31B_Mm LTR ERVK 223 471 -86 2 1727 414 324 79 93 chr3 149731307 149731520 -9868263 + MTEa LTR MaLR 4 216 -143 2 1727 1439 207 107 9 chr3 149731520 149731704 -9868079 - ORR1C2 LTR MaLR 0 384 173 2 1727 1293 18 0 34 chr3 149731704 149731879 -9867904 + (GGGAGA)n Simple_repeat Simple_repeat 6 174 0 2 1727 1439 207 107 9 chr3 149731879 149732040 -9867743 - ORR1C2 LTR MaLR -212 172 5 2 1727 451 272 21 45 chr3 149732040 149732180 -9867603 + MTEa LTR MaLR 217 370 -9 2 1727 540 0 0 0 chr3 149732408 149732468 -9867315 + (TC)n Simple_repeat Simple_repeat 2 61 0 2 1727 444 37 0 0 chr3 149732469 149732523 -9867260 + (TA)n Simple_repeat Simple_repeat 1 54 0 2 1727 453 36 0 0 chr3 149732593 149732648 -9867135 + (TTTC)n Simple_repeat Simple_repeat 2 56 0 2 1727 1164 68 0 0 chr3 149732650 149732796 -9866987 - B1_Mus2 SINE Alu 0 147 2 2 1727 625 334 100 41 chr3 149732953 149733415 -9866368 - MLT1D LTR MaLR 0 505 17 2 1727 3724 204 14 28 chr3 149733439 149734227 -9865556 + Lx5 LINE L1 6220 6996 -54 2 1727 22 0 0 0 chr3 149734236 149734258 -9865525 + AT_rich Low_complexity Low_complexity 1 22 0 2 1727 266 87 0 21 chr3 149734819 149734866 -9864917 + (TTTTG)n Simple_repeat Simple_repeat 2 47 0 2 1727 250 161 73 12 chr3 149735402 149735484 -9864299 + (CTGGGG)n Simple_repeat Simple_repeat 2 88 0 2 1727 513 0 0 0 chr3 149736666 149736723 -9863060 + (TTTC)n Simple_repeat Simple_repeat 2 58 0 2 1727 22 35 0 0 chr3 149737427 149737456 -9862327 + AT_rich Low_complexity Low_complexity 1 29 0 3 1727 233 328 20 82 chr3 149737588 149737734 -9862049 - ORR1C2 LTR MaLR 0 379 243 3 1727 789 240 37 46 chr3 149737871 149738089 -9861694 - ORR1D1 LTR MaLR -1 373 158 3 1727 243 340 23 140 chr3 149738058 149738229 -9861554 - ORR1C2 LTR MaLR -139 245 95 3 1727 7313 89 2 0 chr3 149738246 149739959 -9859824 - L1_Mus1 LINE L1 -2 6565 4851 3 1727 12346 11 0 0 chr3 149739973 149742129 -9857654 - L1Md_A LINE L1 0 6582 4427 3 1727 39118 14 7 8 chr3 149742131 149749212 -9850571 - L1Md_T LINE L1 0 6582 1 3 1727 237 273 18 0 chr3 149749213 149749268 -9850515 - ORR1C2 LTR MaLR -274 100 45 3 1727 351 0 0 0 chr3 149749279 149749318 -9850465 + (CA)n Simple_repeat Simple_repeat 2 40 0 3 1727 241 322 34 22 chr3 149749374 149749463 -9850320 - ORR1C2 LTR MaLR -269 90 1 3 1727 24 0 0 0 chr3 149749858 149749882 -9849901 + AT_rich Low_complexity Low_complexity 1 24 0 3 1727 258 278 71 65 chr3 149749942 149750096 -9849687 - Tigger10 DNA Tigger -1445 398 244 3 1727 334 294 76 33 chr3 149749975 149750120 -9849663 + B3A SINE B2 47 182 -34 3 1727 229 233 33 16 chr3 149750278 149750339 -9849444 + (CTTTG)n Simple_repeat Simple_repeat 3 64 0 3 1727 405 264 79 35 chr3 149750529 149750643 -9849140 + PB1D9 SINE Alu 1 119 -1 3 1727 234 191 0 0 chr3 149750643 149750690 -9849093 + (TAAA)n Simple_repeat Simple_repeat 1 47 0 3 1727 595 142 16 33 chr3 149751886 149752068 -9847715 + (CAGAGA)n Simple_repeat Simple_repeat 2 180 0 3 1727 441 0 0 0 chr3 149752738 149752787 -9846996 + (CA)n Simple_repeat Simple_repeat 2 50 0 3 1727 468 0 0 0 chr3 149752787 149752838 -9846945 + (TA)n Simple_repeat Simple_repeat 2 53 0 3 1727 402 21 0 0 chr3 149753078 149753125 -9846658 + (TC)n Simple_repeat Simple_repeat 1 47 0 3 1727 363 335 47 99 chr3 149753129 149753321 -9846462 - B3A SINE B2 -16 182 1 3 1727 1393 208 68 51 chr3 149753327 149753697 -9846086 + ORR1C1 LTR MaLR 3 378 0 3 1727 247 320 26 7 chr3 149754556 149754710 -9845073 - L1M3 LINE L1 -1195 4945 4789 3 1727 268 265 31 0 chr3 149755195 149755293 -9844490 - L1M3 LINE L1 -1744 4396 4296 3 1727 567 0 0 0 chr3 149755577 149755640 -9844143 + (TA)n Simple_repeat Simple_repeat 1 63 0 3 1727 207 0 0 0 chr3 149755640 149755662 -9844121 + (GA)n Simple_repeat Simple_repeat 2 24 0 3 1727 1479 216 90 26 chr3 149755780 149756170 -9843613 + MTC LTR MaLR 1 415 -6 3 1727 474 327 56 25 chr3 149756279 149757029 -9842754 + L1M5 LINE L1 4851 5631 -713 3 1727 351 89 0 0 chr3 149757196 149757252 -9842531 + (TATG)n Simple_repeat Simple_repeat 1 56 0 3 1727 615 292 46 0 chr3 149757252 149757426 -9842357 - B3A SINE B2 -32 184 1 3 1727 1174 53 22 6 chr3 149758041 149758363 -9841420 + (TG)n Simple_repeat Simple_repeat 1 327 0 3 1727 578 338 46 57 chr3 149758451 149758677 -9841106 + B4 SINE B4 2 232 -60 3 1727 770 178 0 25 chr3 149758677 149758838 -9840945 - Lx LINE L1 -3 6651 6495 3 1727 578 338 46 57 chr3 149758838 149758893 -9840890 + B4 SINE B4 233 280 -12 3 1727 375 23 0 0 chr3 149758895 149758939 -9840844 + (CA)n Simple_repeat Simple_repeat 1 44 0 3 1727 198 0 0 0 chr3 149759058 149759080 -9840703 + (CA)n Simple_repeat Simple_repeat 1 22 0 3 1727 213 121 0 0 chr3 149759668 149759701 -9840082 + (GGGAA)n Simple_repeat Simple_repeat 1 33 0 3 1727 315 0 0 0 chr3 149759701 149759736 -9840047 + (GA)n Simple_repeat Simple_repeat 1 35 0 3 1727 571 324 24 50 chr3 149759996 149760337 -9839446 - Lx9 LINE L1 -370 7274 6943 3 1727 273 0 0 0 chr3 149760360 149760399 -9839384 - L1_Mus2 LINE L1 -1 6565 6527 3 1727 554 297 10 36 chr3 149760451 149760643 -9839140 - Lx9 LINE L1 -1015 6629 6443 3 1727 238 278 24 65 chr3 149761644 149761767 -9838016 + L1M2 LINE L1 4893 5010 -1133 3 1727 696 24 0 0 chr3 149761875 149761957 -9837826 + (GGAA)n Simple_repeat Simple_repeat 3 84 0 3 1727 275 324 42 10 chr3 149762473 149762646 -9837137 + MLT1D LTR MaLR 57 238 -389 3 1727 181 228 138 17 chr3 149764632 149764690 -9835093 + L4 LINE RTE 1376 1440 -589 3 1727 28 0 0 0 chr3 149765790 149765818 -9833965 + AT_rich Low_complexity Low_complexity 1 28 0 3 1727 6171 75 0 24 chr3 149765818 149766663 -9833120 - L1Md_F2 LINE L1 0 6582 5758 3 1727 4228 68 3 3 chr3 149766663 149767242 -9832541 + L1Md_F2 LINE L1 5202 5780 -103 3 1727 10240 132 40 19 chr3 149767261 149769171 -9830612 - L1_Mur2 LINE L1 0 5877 3928 3 1727 4691 141 35 12 chr3 149769173 149769226 -9830557 - L1_Mur2 LINE L1 -3754 2123 2068 3 1727 327 49 0 0 chr3 149769226 149769267 -9830516 + (TGG)n Simple_repeat Simple_repeat 1 41 0 3 1727 4691 156 41 14 chr3 149769267 149770840 -9828943 - L1_Mur2 LINE L1 -3810 2067 447 3 1727 673 210 18 0 chr3 149771997 149772164 -9827619 + (TATATG)n Simple_repeat Simple_repeat 5 174 0 3 1727 239 235 23 34 chr3 149773151 149773239 -9826544 - B3A SINE B2 0 198 112 3 1727 316 303 70 0 chr3 149773408 149773550 -9826233 + Lx7 LINE L1 7160 7311 -385 3 1727 1613 276 78 63 chr3 149773664 149774442 -9825341 - Lx8 LINE L1 -142 7331 6542 3 1727 383 301 59 41 chr3 149774611 149774781 -9825002 + MLT1A0 LTR MaLR 141 313 -52 3 1727 4673 129 24 11 chr3 149774927 149775721 -9824062 + Lx2 LINE L1 6159 6962 -35 3 1727 768 294 76 50 chr3 149775937 149776597 -9823186 - L1MA6 LINE L1 -274 6026 5350 3 1727 322 329 34 0 chr3 149776831 149776977 -9822806 - L1MA6 LINE L1 -1071 5072 4922 3 1727 228 312 39 0 chr3 149778556 149778633 -9821150 - MLT-int LTR MaLR -159 1576 1497 3 1727 762 328 50 0 chr3 149778675 149778916 -9820867 + MTE2b LTR MaLR 61 313 -66 3 1727 592 176 9 0 chr3 149779606 149779714 -9820069 + B1F2 SINE Alu 9 117 -32 3 1727 476 327 65 0 chr3 149780263 149780416 -9819367 - RSINE1 SINE B4 0 165 3 3 1727 264 122 0 0 chr3 149782460 149782501 -9817282 + (TG)n Simple_repeat Simple_repeat 2 42 0 3 1727 212 189 75 0 chr3 149783117 149783170 -9816613 + (TCTG)n Simple_repeat Simple_repeat 2 58 0 3 1727 491 82 0 14 chr3 149783220 149783239 -9816544 + (TC)n Simple_repeat Simple_repeat 2 20 0 3 1727 1085 121 0 6 chr3 149783239 149783414 -9816369 + (TTCC)n Simple_repeat Simple_repeat 4 177 0 3 1727 491 82 0 14 chr3 149783414 149783468 -9816315 + (TC)n Simple_repeat Simple_repeat 2 55 0 3 1727 18144 22 2 0 chr3 149784026 149786843 -9812940 - L1Md_T LINE L1 -1 6581 3759 3 1727 431 18 18 0 chr3 149787078 149787134 -9812649 + (CA)n Simple_repeat Simple_repeat 1 57 0 3 1727 779 271 135 12 chr3 149787152 149787485 -9812298 + ORR1D1 LTR MaLR 1 374 0 3 1727 353 384 14 0 chr3 149787534 149787672 -9812111 - B3A SINE B2 -54 144 5 3 1727 22 0 0 0 chr3 149788055 149788077 -9811706 + AT_rich Low_complexity Low_complexity 1 22 0 3 1727 827 155 6 0 chr3 149788463 149788637 -9811146 + CT-rich Low_complexity Low_complexity 4 178 0 3 1727 2157 180 13 23 chr3 149788674 149789072 -9810711 - ORR1B1 LTR MaLR 0 394 1 3 1727 271 353 73 0 chr3 149789304 149789440 -9810343 + MTE-int LTR MaLR 757 902 -678 3 1727 459 200 94 23 chr3 149789487 149789615 -9810168 - Lx5 LINE L1 0 7050 6914 3 1727 2999 200 75 7 chr3 149789616 149790229 -9809554 + Lx5 LINE L1 6231 6885 -165 3 1727 393 303 108 18 chr3 149790493 149790715 -9809068 - L1M4 LINE L1 -4992 1550 1309 3 1727 23 0 0 0 chr3 149790795 149790818 -9808965 + AT_rich Low_complexity Low_complexity 1 23 0 3 1727 506 314 103 76 chr3 149790826 149791467 -9808316 - L1M4 LINE L1 -5512 1030 373 3 1727 265 311 13 21 chr3 149792924 149793022 -9806761 + B1F SINE Alu 18 112 -5 3 1727 17139 85 42 18 chr3 149793151 149793256 -9806527 - MusHAL1 LINE L1 -3 3350 3247 3 1727 3042 78 17 116 chr3 149793256 149793791 -9805992 - RLTR45 LTR ERVK 0 482 1 3 1727 17139 85 42 18 chr3 149793791 149793838 -9805945 - MusHAL1 LINE L1 -107 3246 3210 3 1727 1590 43 0 0 chr3 149793838 149794025 -9805758 - B2_Mm1t SINE B2 -5 188 2 3 1727 17139 85 42 18 chr3 149794025 149794122 -9805661 - MusHAL1 LINE L1 -144 3209 3115 3 1727 1863 52 4 0 chr3 149794122 149794355 -9805428 + L1Md_T LINE L1 6349 6582 0 3 1727 17139 85 42 18 chr3 149794355 149794567 -9805216 - MusHAL1 LINE L1 -239 3114 2921 3 1727 342 0 0 0 chr3 149794567 149794605 -9805178 + (TTTTG)n Simple_repeat Simple_repeat 5 42 0 3 1727 17139 93 34 15 chr3 149794605 149797424 -9802359 - MusHAL1 LINE L1 -433 2920 4 3 1727 24 0 0 0 chr3 149799824 149799848 -9799935 + AT_rich Low_complexity Low_complexity 1 24 0 3 1727 878 332 100 51 chr3 149800150 149800950 -9798833 + Lx8 LINE L1 6622 7460 -13 3 1727 415 222 80 87 chr3 149801263 149801302 -9798481 + B4A SINE B4 54 91 -201 3 1727 790 76 9 0 chr3 149801302 149801407 -9798376 + B1_Mus1 SINE Alu 2 107 -41 3 1727 905 0 0 9 chr3 149801408 149801514 -9798269 + (GAA)n Simple_repeat Simple_repeat 2 106 0 3 1727 21 0 0 0 chr3 149801713 149801734 -9798049 + AT_rich Low_complexity Low_complexity 1 21 0 3 1727 234 184 47 37 chr3 149801860 149801919 -9797864 + (TA)n Simple_repeat Simple_repeat 2 61 0 3 1727 1087 102 0 0 chr3 149801919 149802066 -9797717 - B1_Mus2 SINE Alu 0 147 1 3 1727 234 184 47 37 chr3 149802066 149802113 -9797670 + (TA)n Simple_repeat Simple_repeat 2 49 0 3 1727 336 366 53 29 chr3 149802420 149802628 -9797155 - L3 LINE CR1 -3 4486 4274 3 1727 272 267 64 40 chr3 149803205 149803330 -9796453 - MTEb LTR MaLR -1 378 251 3 1727 1157 112 3 12 chr3 149804143 149804477 -9795306 + (TTTC)n Simple_repeat Simple_repeat 1 330 0 3 1727 307 333 58 42 chr3 149806418 149806678 -9793105 + L1MC LINE L1 5318 5581 -763 3 1727 33 0 0 0 chr3 149806954 149806987 -9792796 + AT_rich Low_complexity Low_complexity 1 33 0 3 1727 1047 101 12 6 chr3 149807213 149807383 -9792400 - L1_Mus3 LINE L1 -7 6631 6461 3 1727 697 37 0 0 chr3 149808056 149808138 -9791645 + L1Md_T LINE L1 5505 5586 -297 3 1727 8431 33 0 0 chr3 149808138 149809134 -9790649 + L1Md_T LINE L1 5587 6582 0 3 1727 1232 23 11 26 chr3 149809397 149809663 -9790120 + (CA)n Simple_repeat Simple_repeat 1 262 0 3 1727 8960 10 0 0 chr3 149809952 149811616 -9788167 - L1Md_T LINE L1 0 6582 4919 3 1727 368 263 217 14 chr3 149812563 149812927 -9786856 + Lx7 LINE L1 7127 7565 -131 3 1727 4135 45 19 2 chr3 149812927 149813441 -9786342 - L1Md_F2 LINE L1 0 6582 6060 3 1727 688 168 0 15 chr3 149813443 149813576 -9786207 + Lx7 LINE L1 7563 7693 -3 3 1727 586 269 28 69 chr3 149813658 149813861 -9785922 + B3 SINE B2 2 193 -5 3 1727 26 0 0 0 chr3 149813958 149813984 -9785799 + AT_rich Low_complexity Low_complexity 1 26 0 3 1728 479 17 17 0 chr3 149815358 149815418 -9784365 + (TG)n Simple_repeat Simple_repeat 2 62 0 3 1728 219 103 0 0 chr3 149816925 149816964 -9782819 + (ATTG)n Simple_repeat Simple_repeat 2 40 0 3 1728 1110 103 0 6 chr3 149816965 149817122 -9782661 - B2_Mm2 SINE B2 -38 157 2 4 1728 1433 166 99 37 chr3 149817122 149817432 -9782351 - ORR1B2 LTR MaLR -44 334 1 4 1728 227 287 63 84 chr3 149817435 149817530 -9782253 - RMER10A LTR ERVL -222 220 128 4 1728 22 35 0 0 chr3 149818390 149818419 -9781364 + AT_rich Low_complexity Low_complexity 1 29 0 4 1728 259 333 57 0 chr3 149818515 149818620 -9781163 - MER5A DNA MER1_type -29 160 50 4 1728 757 282 10 30 chr3 149818983 149819184 -9780599 + B3 SINE B2 9 205 -11 4 1728 273 348 72 53 chr3 149819366 149819575 -9780208 - B4A SINE B4 -74 218 6 4 1728 2849 189 37 64 chr3 149820240 149820758 -9779025 + RMER6C LTR ERVK 7 511 -179 4 1728 1413 69 0 0 chr3 149820758 149820932 -9778851 + B2_Mm1a SINE B2 1 174 -19 4 1728 2849 189 37 64 chr3 149820932 149821116 -9778667 + RMER6C LTR ERVK 512 690 0 4 1728 347 314 80 0 chr3 149821145 149821282 -9778501 + B1_Mur2 SINE Alu 1 148 -1 4 1728 37748 12 2 7 chr3 149821636 149826794 -9772989 + L1Md_A LINE L1 462 5586 -297 4 1728 8764 14 1 0 chr3 149826794 149827789 -9771994 + L1Md_A LINE L1 5587 6582 0 4 1728 814 48 10 0 chr3 149829699 149829803 -9769980 + MTB_Mm LTR MaLR 1 105 -302 4 1728 701 64 11 0 chr3 149829803 149829897 -9769886 + MTB_Mm LTR MaLR 306 400 0 4 1728 2074 170 230 21 chr3 149829901 149830466 -9769317 - RMER6C LTR ERVK -7 683 1 4 1728 263 93 23 0 chr3 149830516 149830559 -9769224 + (CATA)n Simple_repeat Simple_repeat 4 47 0 4 1728 463 260 0 30 chr3 149830660 149830759 -9769024 + RSINE1 SINE B4 3 98 -67 4 1728 242 378 125 8 chr3 149831610 149831850 -9767933 - Tigger5 DNA MER2_type 0 2406 2139 4 1728 461 303 15 15 chr3 149832241 149832375 -9767408 - B1F2 SINE Alu -7 142 9 4 1728 2080 108 32 16 chr3 149833264 149833576 -9766207 - Lx3_Mus LINE L1 -8 7001 6685 4 1728 269 294 99 80 chr3 149833586 149833915 -9765868 + MTEa LTR MaLR 32 377 -2 4 1728 1067 320 189 46 chr3 149833967 149834634 -9765149 + MTEa-int LTR MaLR 37 766 -814 4 1728 405 90 0 0 chr3 149836207 149836274 -9763509 + (TG)n Simple_repeat Simple_repeat 1 67 0 4 1728 317 319 190 15 chr3 149836287 149836424 -9763359 - B3 SINE B2 -46 170 10 4 1728 198 207 0 0 chr3 149836761 149836819 -9762964 + T-rich Low_complexity Low_complexity 1 58 0 4 1728 304 357 9 21 chr3 149837069 149837283 -9762500 + B4A SINE B4 1 290 -2 4 1728 504 0 0 0 chr3 149837648 149837704 -9762079 + (TAA)n Simple_repeat Simple_repeat 2 57 0 4 1728 1857 130 7 7 chr3 149838186 149838488 -9761295 - Lx3B LINE L1 -3 6970 6669 4 1728 849 87 0 0 chr3 149838488 149838603 -9761180 + Lx3A LINE L1 6553 6667 -314 4 1728 186 103 0 0 chr3 149839306 149839335 -9760448 + (CA)n Simple_repeat Simple_repeat 2 30 0 4 1728 620 284 33 40 chr3 149839914 149840215 -9759568 - L1M2 LINE L1 -1086 5057 4759 4 1728 24842 139 22 52 chr3 149840327 149846739 -9753044 - L1_Mus3 LINE L1 0 6638 433 4 1728 239 250 36 27 chr3 149846736 149846847 -9752936 - L1M2 LINE L1 -1372 4771 4660 4 1728 256 233 159 35 chr3 149846871 149847011 -9752772 - L1M2 LINE L1 -1477 4663 4509 4 1728 535 287 113 28 chr3 149847121 149847547 -9752236 - L1_Mur3 LINE L1 -1563 4317 3856 4 1728 267 31 0 0 chr3 149847562 149847594 -9752189 + (CA)n Simple_repeat Simple_repeat 2 33 0 4 1728 459 291 102 40 chr3 149847594 149847869 -9751914 - MTEb LTR MaLR -14 365 11 4 1728 445 326 49 13 chr3 149847883 149848107 -9751676 - Ricksha DNA MuDR -274 2972 2741 4 1728 1097 115 1 24 chr3 149848109 149848296 -9751487 + B2_Mm2 SINE B2 1 184 -9 4 1728 478 285 111 50 chr3 149848300 149848776 -9751007 - Ricksha DNA MuDR -500 2746 2242 4 1728 390 386 36 64 chr3 149849322 149849571 -9750212 - B4A SINE B4 -46 246 5 4 1728 327 25 0 0 chr3 149849599 149849639 -9750144 + (CA)n Simple_repeat Simple_repeat 2 41 0 4 1728 1346 291 101 34 chr3 149849805 149850685 -9749098 - Ricksha DNA MuDR -1403 1843 905 4 1728 812 336 115 50 chr3 149850686 149851147 -9748636 - MLT2B3 LTR ERVL -2 552 62 4 1728 297 0 0 0 chr3 149851287 149851320 -9748463 + (CA)n Simple_repeat Simple_repeat 1 33 0 4 1728 274 289 10 135 chr3 149851497 149851601 -9748182 - MER5B DNA MER1_type -9 169 79 4 1728 1172 280 34 71 chr3 149852071 149852536 -9747247 - MER82 DNA MER2_type -179 474 27 4 1728 405 336 34 14 chr3 149852614 149852822 -9746961 + MLT2B4 LTR ERVL 1 212 -344 4 1728 1859 214 67 8 chr3 149853031 149853421 -9746362 - MTC LTR MaLR -8 413 1 4 1728 198 0 0 0 chr3 149853928 149853950 -9745833 + (A)n Simple_repeat Simple_repeat 1 22 0 4 1728 276 30 0 0 chr3 149854264 149854297 -9745486 + (TG)n Simple_repeat Simple_repeat 1 33 0 4 1728 639 109 127 0 chr3 149854391 149854501 -9745282 + Lx2 LINE L1 6868 6991 -6 4 1728 233 343 115 52 chr3 149854978 149855230 -9744553 + MLT1G3 LTR MaLR 121 388 -207 4 1728 215 103 26 0 chr3 149857359 149857398 -9742385 + (CAAA)n Simple_repeat Simple_repeat 1 40 0 4 1728 246 62 0 0 chr3 149858674 149858706 -9741077 + (CA)n Simple_repeat Simple_repeat 2 33 0 4 1728 378 0 0 0 chr3 149858707 149858749 -9741034 + (GA)n Simple_repeat Simple_repeat 1 42 0 4 1728 30 45 0 0 chr3 149860356 149860400 -9739383 + AT_rich Low_complexity Low_complexity 1 44 0 4 1728 321 205 63 13 chr3 149860400 149860479 -9739304 + Lx6 LINE L1 6107 6189 -1271 4 1728 28 29 0 0 chr3 149861355 149861390 -9738393 + AT_rich Low_complexity Low_complexity 1 35 0 4 1728 25 0 0 0 chr3 149863887 149863912 -9735871 + AT_rich Low_complexity Low_complexity 1 25 0 4 1728 521 301 60 74 chr3 149864208 149864506 -9735277 - Lx6 LINE L1 -26 7434 7141 4 1728 872 121 7 0 chr3 149864507 149864648 -9735135 + (TA)n Simple_repeat Simple_repeat 2 143 0 4 1728 405 0 0 0 chr3 149864651 149864696 -9735087 + (CA)n Simple_repeat Simple_repeat 2 46 0 4 1728 564 198 0 0 chr3 149864700 149864796 -9734987 + L1_Mur3 LINE L1 5565 5660 -220 4 1728 665 284 83 52 chr3 149864812 149865064 -9734719 - Lx6 LINE L1 -322 6728 6469 4 1728 740 273 105 24 chr3 149865052 149865410 -9734373 - Lx6 LINE L1 -686 6364 5961 4 1728 2098 172 51 1 chr3 149865408 149865916 -9733867 + Lx5 LINE L1 5424 5955 -1095 4 1728 245 262 48 7 chr3 149866491 149866637 -9733146 + (TCTA)n Simple_repeat Simple_repeat 2 153 0 4 1728 291 361 99 8 chr3 149866927 149867058 -9732725 + B1F1 SINE Alu 1 143 -6 4 1728 904 329 39 22 chr3 149868662 149869020 -9730763 - Lx8 LINE L1 -645 6828 6465 4 1728 236 152 15 0 chr3 149869349 149869415 -9730368 + T-rich Low_complexity Low_complexity 4 70 0 4 1728 800 284 36 50 chr3 149869593 149869709 -9730074 - Lx9 LINE L1 -8 7636 7524 4 1728 228 67 0 0 chr3 149869709 149869739 -9730044 + (TATG)n Simple_repeat Simple_repeat 1 30 0 4 1728 800 284 36 50 chr3 149869739 149869981 -9729802 - Lx9 LINE L1 -121 7523 7283 4 1728 735 350 67 33 chr3 149870257 149870635 -9729148 - MTE2a LTR MaLR 0 379 19 4 1728 1467 311 62 81 chr3 149870659 149871332 -9728451 - MTE2a-int LTR MaLR -1 1579 479 4 1728 809 317 45 92 chr3 149871398 149871712 -9728071 - MTE2a-int LTR MaLR -1193 387 102 4 1728 3635 138 102 111 chr3 149871712 149872623 -9727160 + RMER17A2 LTR ERVK 1 903 -3 4 1728 809 317 45 92 chr3 149872623 149872708 -9727075 - MTE2a-int LTR MaLR -1479 101 7 4 1728 683 321 127 46 chr3 149872711 149873034 -9726749 - MTE2a LTR MaLR 0 379 31 4 1728 377 342 82 50 chr3 149873797 149874047 -9725736 - MLT1C LTR MaLR 0 467 206 4 1728 225 83 0 0 chr3 149874047 149874083 -9725700 + (TCTG)n Simple_repeat Simple_repeat 1 36 0 4 1728 377 342 82 50 chr3 149874083 149874208 -9725575 - MLT1C LTR MaLR -262 205 80 4 1728 303 319 60 44 chr3 149874240 149874818 -9724965 - Lx8 LINE L1 -1198 6275 5657 4 1728 288 0 0 0 chr3 149874832 149874864 -9724919 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 4 1728 1889 114 3 20 chr3 149874864 149875159 -9724624 - Lx3A LINE L1 -3 6978 6689 4 1728 582 274 16 92 chr3 149875214 149875463 -9724320 - Lx8 LINE L1 -343 5537 5308 4 1728 1697 301 80 56 chr3 149875572 149876336 -9723447 + Lx6 LINE L1 6590 7371 -89 4 1728 314 309 53 0 chr3 149876515 149876609 -9723174 + Lx8 LINE L1 7105 7203 -270 4 1728 24 0 0 0 chr3 149878107 149878131 -9721652 + AT_rich Low_complexity Low_complexity 1 24 0 4 1728 180 0 0 0 chr3 149878323 149878343 -9721440 + (T)n Simple_repeat Simple_repeat 1 20 0 4 1728 3061 150 36 108 chr3 149878534 149879377 -9720406 - RMER17D2 LTR ERVK -2 807 26 4 1728 1069 265 87 56 chr3 149879472 149879828 -9719955 - ORR1D2 LTR MaLR -1 369 3 4 1728 936 27 0 0 chr3 149880912 149881023 -9718760 + (TA)n Simple_repeat Simple_repeat 1 111 0 4 1728 242 235 0 12 chr3 149881123 149881169 -9718614 + polypurine Low_complexity Low_complexity 2 47 0 4 1728 1137 123 0 0 chr3 149881169 149881348 -9718435 + (GA)n Simple_repeat Simple_repeat 2 180 0 4 1728 242 235 0 12 chr3 149881348 149881383 -9718400 + polypurine Low_complexity Low_complexity 48 82 0 4 1728 582 250 27 27 chr3 149881818 149881966 -9717817 - B1_Mur1 SINE Alu 0 149 2 4 1728 251 304 79 7 chr3 149881973 149882112 -9717671 - L1MEc LINE L1 -5127 1273 1125 4 1728 226 319 0 0 chr3 149882113 149882182 -9717601 + (CA)n Simple_repeat Simple_repeat 2 70 0 4 1728 363 295 123 37 chr3 149882258 149882641 -9717142 - L1MEc LINE L1 -5345 1055 640 4 1728 204 209 16 80 chr3 149883249 149883374 -9716409 + (CATATA)n Simple_repeat Simple_repeat 6 122 0 4 1728 294 336 43 36 chr3 149883532 149883671 -9716112 + ID_B1 SINE B4 2 141 -83 4 1728 3666 187 14 11 chr3 149884078 149884866 -9714917 + Lx6 LINE L1 5129 5923 -1537 4 1728 417 20 0 0 chr3 149886024 149886074 -9713709 + (CAA)n Simple_repeat Simple_repeat 2 51 0 4 1728 324 380 31 0 chr3 149887583 149887712 -9712071 - B1F1 SINE Alu -16 133 1 4 1728 875 66 16 0 chr3 149888512 149888634 -9711149 + (TCCCC)n Simple_repeat Simple_repeat 3 126 0 4 1728 444 104 0 0 chr3 149888754 149888821 -9710962 + (CA)n Simple_repeat Simple_repeat 2 68 0 4 1728 278 111 56 0 chr3 149888878 149888932 -9710851 + CT-rich Low_complexity Low_complexity 3 59 0 4 1728 333 0 0 0 chr3 149888933 149888970 -9710813 + (CA)n Simple_repeat Simple_repeat 1 37 0 4 1728 347 234 146 25 chr3 149890548 149890564 -9709219 - L1MA6 LINE L1 -11 6289 6275 4 1728 500 0 17 0 chr3 149890564 149890624 -9709159 + (TCTA)n Simple_repeat Simple_repeat 2 62 0 4 1728 347 234 146 25 chr3 149890624 149890765 -9709018 - L1MA6 LINE L1 -26 6274 6113 4 1728 21 36 0 0 chr3 149890983 149891011 -9708772 + AT_rich Low_complexity Low_complexity 1 28 0 4 1728 33 85 0 0 chr3 149893246 149893328 -9706455 + AT_rich Low_complexity Low_complexity 1 82 0 4 1728 22 35 0 0 chr3 149893754 149893783 -9706000 + AT_rich Low_complexity Low_complexity 1 29 0 4 1728 501 333 25 55 chr3 149894921 149895121 -9704662 - B3A SINE B2 -1 197 4 4 1728 2118 195 9 2 chr3 149895142 149895569 -9704214 + Lx LINE L1 6216 6645 -9 4 1728 558 0 0 0 chr3 149895585 149895647 -9704136 + (TC)n Simple_repeat Simple_repeat 2 63 0 5 1728 312 27 0 0 chr3 149895647 149895683 -9704100 + (TG)n Simple_repeat Simple_repeat 2 38 0 5 1728 198 0 0 0 chr3 149896353 149896375 -9703408 + (T)n Simple_repeat Simple_repeat 1 22 0 5 1728 2106 201 151 16 chr3 149897396 149898004 -9701779 - RMER6C LTR ERVK 0 690 1 5 1728 25 31 0 0 chr3 149898134 149898166 -9701617 + AT_rich Low_complexity Low_complexity 1 32 0 5 1728 197 302 74 49 chr3 149899833 149899955 -9699828 + MIR SINE MIR 110 234 -28 5 1728 204 40 0 0 chr3 149900449 149900474 -9699309 + (TTCA)n Simple_repeat Simple_repeat 1 25 0 5 1728 228 279 0 14 chr3 149900495 149900564 -9699219 + (TG)n Simple_repeat Simple_repeat 1 68 0 5 1728 348 267 19 29 chr3 149901232 149901336 -9698447 + Lx2B LINE L1 6887 6989 -11 5 1728 39 50 0 0 chr3 149901579 149901639 -9698144 + AT_rich Low_complexity Low_complexity 1 60 0 5 1728 252 86 0 0 chr3 149902262 149902297 -9697486 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 5 1728 1086 67 0 0 chr3 149902298 149902433 -9697350 - B1_Mus2 SINE Alu -12 135 1 5 1728 297 0 0 0 chr3 149902507 149902540 -9697243 + (TA)n Simple_repeat Simple_repeat 1 33 0 5 1728 320 0 25 0 chr3 149902540 149902579 -9697204 + (GA)n Simple_repeat Simple_repeat 2 42 0 5 1728 1632 299 42 30 chr3 149902613 149903238 -9696545 - Lx9 LINE L1 -535 7109 6478 5 1728 636 26 0 0 chr3 149903740 149903818 -9695965 + (CA)n Simple_repeat Simple_repeat 1 78 0 5 1728 23 0 0 0 chr3 149904371 149904394 -9695389 + AT_rich Low_complexity Low_complexity 1 23 0 5 1728 255 57 0 0 chr3 149904513 149904527 -9695256 + (TA)n Simple_repeat Simple_repeat 1 14 0 5 1728 405 0 0 0 chr3 149904527 149904572 -9695211 + (TG)n Simple_repeat Simple_repeat 2 46 0 5 1728 255 57 0 0 chr3 149904572 149904592 -9695191 + (TA)n Simple_repeat Simple_repeat 1 20 0 5 1728 381 22 0 0 chr3 149904681 149904727 -9695056 + (TTTA)n Simple_repeat Simple_repeat 3 48 0 5 1728 1888 243 7 31 chr3 149904748 149905169 -9694614 - Lx5 LINE L1 -45 7005 6595 5 1728 2191 182 16 58 chr3 149905172 149905668 -9694115 + Lx5 LINE L1 6019 6493 -557 5 1728 387 0 0 0 chr3 149905733 149905776 -9694007 + (TG)n Simple_repeat Simple_repeat 2 44 0 5 1728 786 109 14 7 chr3 149905779 149905917 -9693866 + (TA)n Simple_repeat Simple_repeat 1 139 0 5 1728 279 0 0 0 chr3 149905917 149905947 -9693836 + (CA)n Simple_repeat Simple_repeat 2 32 0 5 1728 191 353 88 29 chr3 149906196 149906333 -9693450 + MIR SINE MIR 2 146 -116 5 1728 288 0 0 0 chr3 149908090 149908122 -9691661 + (TG)n Simple_repeat Simple_repeat 1 32 0 5 1728 443 267 82 16 chr3 149908122 149908244 -9691539 - RSINE1 SINE B4 -32 133 4 5 1728 204 255 0 0 chr3 149908900 149908947 -9690836 + T-rich Low_complexity Low_complexity 1 47 0 5 1728 247 200 0 0 chr3 149909062 149909117 -9690666 + A-rich Low_complexity Low_complexity 1 55 0 5 1728 231 0 77 0 chr3 149909294 149909333 -9690450 + (TAAAAA)n Simple_repeat Simple_repeat 2 43 0 5 1728 186 43 0 0 chr3 149909731 149909754 -9690029 + (TC)n Simple_repeat Simple_repeat 1 23 0 5 1728 399 277 140 14 chr3 149909844 149909987 -9689796 + RSINE1 SINE B4 3 163 -2 5 1728 577 287 93 75 chr3 149910080 149910584 -9689199 + RMER20B LTR ERVK 1 516 0 5 1728 486 0 0 0 chr3 149910799 149910853 -9688930 + (GA)n Simple_repeat Simple_repeat 1 54 0 5 1728 386 366 83 36 chr3 149912077 149912329 -9687454 + Tigger5 DNA MER2_type 2 265 -2141 5 1728 288 312 105 35 chr3 149912344 149912487 -9687296 + Tigger5 DNA MER2_type 2195 2347 -59 5 1728 224 30 0 29 chr3 149912609 149912643 -9687140 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 5 1728 544 62 444 20 chr3 149912643 149912735 -9687048 - B1_Mm SINE Alu -11 136 1 5 1728 319 343 103 16 chr3 149912883 149913126 -9686657 - MLT2C2 LTR ERVL -200 264 1 5 1728 24 32 0 0 chr3 149913237 149913268 -9686515 + AT_rich Low_complexity Low_complexity 1 31 0 5 1728 457 273 18 9 chr3 149913646 149913757 -9686026 - B3 SINE B2 -78 138 27 5 1728 3148 122 32 6 chr3 149913757 149914261 -9685522 - Lx3_Mus LINE L1 0 7009 6493 5 1728 954 203 164 44 chr3 149914261 149914626 -9685157 - RLTR9E LTR ERVK 0 409 1 5 1728 4675 93 17 6 chr3 149914626 149915316 -9684467 - Lx3_Mus LINE L1 -511 6498 5801 5 1728 1795 185 22 8 chr3 149915374 149915744 -9684039 + L1_Mur2 LINE L1 4909 5283 -594 5 1728 6326 103 38 11 chr3 149915733 149916685 -9683098 + Lx LINE L1 5674 6651 -3 5 1728 746 343 72 20 chr3 149916963 149917269 -9682514 + MTEa LTR MaLR 1 322 -57 5 1728 210 154 26 0 chr3 149918489 149918528 -9681255 + CT-rich Low_complexity Low_complexity 2 41 0 5 1728 564 15 0 0 chr3 149919053 149919118 -9680665 + (GA)n Simple_repeat Simple_repeat 2 66 0 5 1728 380 336 46 46 chr3 149919825 149919978 -9679805 - B4A SINE B4 -123 169 17 5 1728 345 292 53 0 chr3 149919982 149920095 -9679688 - B2_Mm1a SINE B2 -74 119 1 5 1728 3338 145 33 49 chr3 149921610 149921996 -9677787 + MT2B LTR ERVL 1 382 -219 5 1728 3758 195 79 15 chr3 149921996 149922804 -9676979 - RMER13A LTR ERVK 0 860 1 5 1728 3338 145 33 49 chr3 149922804 149923028 -9676755 + MT2B LTR ERVL 383 601 0 5 1728 234 350 29 20 chr3 149923032 149923134 -9676649 - LTR16A LTR ERVL -346 105 3 5 1728 358 311 67 27 chr3 149923341 149923566 -9676217 - L1M5 LINE L1 -929 5217 4984 5 1728 937 225 86 13 chr3 149923961 149924263 -9675520 - Lx9 LINE L1 -6 7638 7315 5 1728 380 371 51 56 chr3 149924471 149924705 -9675078 + MLT1A0 LTR MaLR 1 233 -132 5 1728 753 296 86 25 chr3 149924877 149925238 -9674545 - Lx9 LINE L1 -174 7470 7088 5 1728 470 240 156 81 chr3 149925238 149925424 -9674359 - B3 SINE B2 -15 201 2 5 1728 23 0 0 0 chr3 149925805 149925828 -9673955 + AT_rich Low_complexity Low_complexity 1 23 0 5 1728 302 184 0 13 chr3 149925901 149925978 -9673805 + (CA)n Simple_repeat Simple_repeat 1 76 0 5 1728 1218 130 63 0 chr3 149927208 149927415 -9672368 - Lx2 LINE L1 -2 6995 6776 5 1728 7454 77 9 2 chr3 149927497 149928507 -9671276 + L1_Mm LINE L1 4602 5618 -265 5 1728 621 0 0 0 chr3 149928741 149928810 -9670973 + (TC)n Simple_repeat Simple_repeat 2 70 0 5 1728 531 298 47 10 chr3 149928810 149929003 -9670780 - B3 SINE B2 -16 200 1 5 1728 21 36 0 0 chr3 149929771 149929799 -9669984 + AT_rich Low_complexity Low_complexity 1 28 0 5 1728 23 0 0 0 chr3 149929982 149930005 -9669778 + AT_rich Low_complexity Low_complexity 1 23 0 5 1728 546 178 99 25 chr3 149930318 149930439 -9669344 + ORR1C1 LTR MaLR 162 291 -87 5 1728 370 207 22 0 chr3 149930417 149930510 -9669273 - ORR1E LTR MaLR -227 132 36 5 1728 12461 117 39 46 chr3 149930603 149932713 -9667070 + L1VL4 LINE L1 207 2298 -1261 5 1728 351 0 0 0 chr3 149932713 149932752 -9667031 + (CA)n Simple_repeat Simple_repeat 2 40 0 5 1728 198 0 0 0 chr3 149932752 149932773 -9667010 + (TA)n Simple_repeat Simple_repeat 2 23 0 5 1728 12461 96 33 7 chr3 149932773 149933320 -9666463 + L1VL4 LINE L1 2299 2849 -710 5 1728 7001 76 5 30 chr3 149933321 149934597 -9665186 + L1_Mus1 LINE L1 5312 6564 -3 5 1728 12915 175 39 13 chr3 149934602 149934891 -9664892 + Lx2 LINE L1 3189 3476 -2407 5 1728 189 0 0 0 chr3 149934891 149934912 -9664871 + (CAA)n Simple_repeat Simple_repeat 1 21 0 5 1728 12915 163 35 16 chr3 149934912 149938357 -9661426 + Lx2 LINE L1 3477 6985 -12 5 1728 417 39 0 0 chr3 149943607 149943658 -9656125 + (CA)n Simple_repeat Simple_repeat 2 52 0 5 1728 23 33 0 0 chr3 149943706 149943736 -9656047 + AT_rich Low_complexity Low_complexity 1 30 0 5 1728 180 125 0 0 chr3 149944153 149944185 -9655598 + (CA)n Simple_repeat Simple_repeat 2 33 0 5 1728 989 106 0 6 chr3 149944186 149944271 -9655512 + (TC)n Simple_repeat Simple_repeat 2 86 0 5 1728 204 97 0 0 chr3 149944271 149944302 -9655481 + (CA)n Simple_repeat Simple_repeat 1 31 0 5 1728 989 106 0 6 chr3 149944302 149944397 -9655386 + (TC)n Simple_repeat Simple_repeat 1 95 0 5 1728 369 0 0 0 chr3 149944398 149944439 -9655344 + (CA)n Simple_repeat Simple_repeat 1 41 0 5 1728 471 287 30 43 chr3 149944439 149944603 -9655180 + RSINE1 SINE B4 4 165 0 5 1728 21 57 0 0 chr3 149946036 149946071 -9653712 + AT_rich Low_complexity Low_complexity 1 35 0 5 1729 22 56 0 0 chr3 149946543 149946579 -9653204 + AT_rich Low_complexity Low_complexity 1 36 0 5 1729 469 96 0 60 chr3 149946655 149946788 -9652995 + (CA)n Simple_repeat Simple_repeat 1 125 0 5 1729 496 304 77 25 chr3 149949370 149949566 -9650217 + ID_B1 SINE B4 13 218 -6 5 1729 333 68 0 0 chr3 149949572 149949616 -9650167 + (CATA)n Simple_repeat Simple_repeat 1 44 0 5 1729 303 378 97 6 chr3 149949851 149950016 -9649767 + B4A SINE B4 27 206 -86 5 1729 3684 107 57 2 chr3 149950053 149950613 -9649170 + L1_Mus2 LINE L1 5976 6566 0 5 1729 1089 321 69 17 chr3 149950625 149951103 -9648680 + Lx8 LINE L1 6562 7064 -409 5 1729 264 325 58 47 chr3 149952047 149952353 -9647430 + MLT1C LTR MaLR 78 390 0 5 1729 767 220 139 19 chr3 149955616 149955856 -9643927 - Lx7 LINE L1 -1865 5831 5563 5 1729 249 33 0 0 chr3 149955997 149956027 -9643756 + (TC)n Simple_repeat Simple_repeat 1 30 0 5 1729 492 18 0 0 chr3 149956043 149956100 -9643683 + (TG)n Simple_repeat Simple_repeat 2 58 0 5 1729 21 36 0 0 chr3 149956228 149956256 -9643527 + AT_rich Low_complexity Low_complexity 1 28 0 5 1729 324 0 0 0 chr3 149956478 149956514 -9643269 + (TC)n Simple_repeat Simple_repeat 1 36 0 5 1729 2155 244 113 0 chr3 149956515 149957039 -9642744 - Lx6 LINE L1 -136 7324 6742 5 1729 462 114 0 0 chr3 149957041 149957111 -9642672 + (T)n Simple_repeat Simple_repeat 1 70 0 5 1729 527 217 39 62 chr3 149957805 149957933 -9641850 + B1_Mur1 SINE Alu 23 147 -2 6 1729 311 329 0 0 chr3 149957980 149958065 -9641718 - RSINE1 SINE B4 -28 137 53 6 1729 38 0 0 0 chr3 149958460 149958498 -9641285 + AT_rich Low_complexity Low_complexity 1 38 0 6 1729 303 331 25 0 chr3 149961852 149961973 -9637810 + MER82 DNA MER2_type 127 250 -403 6 1729 1834 173 15 0 chr3 149961980 149962315 -9637468 - L1_Mur2 LINE L1 -635 5242 4903 6 1729 225 208 68 14 chr3 149962898 149962971 -9636812 + (CATATA)n Simple_repeat Simple_repeat 5 81 0 6 1729 194 0 39 0 chr3 149963361 149963387 -9636396 + (TG)n Simple_repeat Simple_repeat 2 28 0 6 1729 58 70 0 0 chr3 149963771 149963885 -9635898 + AT_rich Low_complexity Low_complexity 1 114 0 6 1729 278 321 178 15 chr3 149963935 149964146 -9635637 - MLT1A0 LTR MaLR 0 365 121 6 1729 738 50 31 77 chr3 149964289 149964454 -9635329 + L1Md_F3 LINE L1 6459 6584 0 6 1729 369 0 0 0 chr3 149964577 149964618 -9635165 + (TA)n Simple_repeat Simple_repeat 1 41 0 6 1729 985 47 0 23 chr3 149965365 149965497 -9634286 - B1_Mus2 SINE Alu -1 146 18 6 1729 31 58 0 0 chr3 149965513 149965565 -9634218 + AT_rich Low_complexity Low_complexity 1 52 0 6 1729 230 318 36 67 chr3 149965572 149965737 -9634046 + L1ME3 LINE L1 5655 5814 -348 6 1729 346 318 86 7 chr3 149965989 149966141 -9633642 + B4 SINE B4 125 288 -4 6 1729 399 299 61 22 chr3 149966679 149966908 -9632875 + L1ME3 LINE L1 5894 6131 -31 6 1729 377 288 104 42 chr3 149968229 149968421 -9631362 - MLT1A1 LTR MaLR -4 404 201 6 1729 32 57 0 0 chr3 149969387 149969440 -9630343 + AT_rich Low_complexity Low_complexity 1 53 0 6 1729 540 0 0 0 chr3 149970565 149970625 -9629158 + (TC)n Simple_repeat Simple_repeat 2 61 0 6 1729 4498 204 56 46 chr3 149971063 149972155 -9627628 + RLTR25A LTR ERVK 1 1103 0 6 1729 38 39 0 0 chr3 149972191 149972243 -9627540 + AT_rich Low_complexity Low_complexity 1 52 0 6 1729 21 0 0 0 chr3 149973230 149973251 -9626532 + AT_rich Low_complexity Low_complexity 1 21 0 6 1729 2457 178 37 13 chr3 149973443 149973904 -9625879 + RLTR19 LTR ERVK 28 499 0 6 1729 1136 68 0 7 chr3 149974007 149974156 -9625627 - B1_Mus1 SINE Alu 0 148 1 6 1729 222 37 0 0 chr3 149974350 149974377 -9625406 + (TG)n Simple_repeat Simple_repeat 1 27 0 6 1729 1518 199 40 25 chr3 149976460 149976945 -9622838 + RMER6C LTR ERVK 1 690 0 6 1729 535 319 71 73 chr3 149977192 149977490 -9622293 + MTD LTR MaLR 7 292 -115 6 1729 506 283 100 26 chr3 149978149 149978340 -9621443 + MIRb SINE MIR 36 238 -30 6 1729 618 39 0 0 chr3 149978526 149978603 -9621180 + (CA)n Simple_repeat Simple_repeat 2 78 0 6 1729 318 50 0 0 chr3 149978722 149978762 -9621021 + (TG)n Simple_repeat Simple_repeat 2 41 0 6 1729 245 167 0 18 chr3 149979442 149979497 -9620286 + (TA)n Simple_repeat Simple_repeat 1 54 0 6 1729 231 36 0 0 chr3 149981801 149981829 -9617954 + (CAAA)n Simple_repeat Simple_repeat 3 30 0 6 1729 292 215 13 59 chr3 149982485 149982638 -9617145 + (TTATA)n Simple_repeat Simple_repeat 5 150 0 6 1729 1084 111 21 5 chr3 149982860 149983050 -9616733 - L1_Mus3 LINE L1 -4 6634 6442 6 1729 336 340 60 83 chr3 149984937 149985251 -9614532 + ORR1E LTR MaLR 10 316 -43 6 1729 23 0 0 0 chr3 149985265 149985288 -9614495 + AT_rich Low_complexity Low_complexity 1 23 0 6 1729 324 0 0 0 chr3 149985943 149985979 -9613804 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 6 1729 6082 63 9 7 chr3 149986190 149987003 -9612780 - L1_Mus2 LINE L1 0 6566 5753 6 1729 1144 94 0 16 chr3 149987123 149987306 -9612477 + (TC)n Simple_repeat Simple_repeat 1 180 0 6 1729 519 300 12 12 chr3 149987451 149987613 -9612170 - RSINE1 SINE B4 0 165 4 6 1729 570 15 0 0 chr3 149988389 149988456 -9611327 + (TA)n Simple_repeat Simple_repeat 1 67 0 6 1729 226 294 45 18 chr3 149988867 149988978 -9610805 - Charlie24 DNA MER1_type -131 2319 2206 6 1729 245 362 25 32 chr3 149990261 149990418 -9609365 + MLT2B1 LTR ERVL 370 525 -42 6 1729 290 257 157 71 chr3 149993449 149993646 -9606137 + B3 SINE B2 3 216 0 6 1729 290 333 20 0 chr3 149994661 149994760 -9605023 + B4A SINE B4 165 265 -27 6 1729 407 357 60 6 chr3 149995035 149995218 -9604565 - B3 SINE B2 0 216 24 6 1729 827 331 32 66 chr3 149996825 149997203 -9602580 - MTE2a LTR MaLR -1 378 14 6 1729 25 31 0 0 chr3 149997423 149997455 -9602328 + AT_rich Low_complexity Low_complexity 1 32 0 6 1729 27 108 0 0 chr3 149997905 149998016 -9601767 + AT_rich Low_complexity Low_complexity 1 111 0 6 1729 2415 62 0 3 chr3 149999172 149999495 -9600288 + L1_Mus4 LINE L1 6308 6629 -7 6 1729 1170 126 27 0 chr3 149999817 150000000 -9599783 + IAPLTR2_Mm LTR ERVK 1 188 -287 6 1729 1144 78 0 58 chr3 150000000 150000191 -9599592 + IAPLTR1_Mm LTR ERVK 188 367 0 1 1729 20214 63 21 21 chr3 150000191 150002858 -9596925 + IAPEz-int LTR ERVK 8 2674 -3807 1 1729 8706 44 9 13 chr3 150002836 150003917 -9595866 + IAPEz-int LTR ERVK 5403 6479 -2 1 1729 2164 127 13 32 chr3 150003919 150004293 -9595490 + IAPLTR1_Mm LTR ERVK 1 367 0 1 1729 468 0 0 0 chr3 150004374 150004426 -9595357 + (TA)n Simple_repeat Simple_repeat 1 52 0 2 1729 204 40 0 0 chr3 150006517 150006542 -9593241 + (TTTG)n Simple_repeat Simple_repeat 4 28 0 3 1729 352 386 2 0 chr3 150007444 150007597 -9592186 - MIR SINE MIR -120 156 3 4 1729 445 331 0 16 chr3 150008711 150008840 -9590943 - B1_Mur1 SINE Alu 0 149 23 5 1729 809 97 42 0 chr3 150009061 150009226 -9590557 + (TCTA)n Simple_repeat Simple_repeat 2 173 0 6 1729 730 326 11 19 chr3 150009353 150009619 -9590164 - Lx7 LINE L1 -395 7301 7038 7 1729 1293 316 59 13 chr3 150009624 150010099 -9589684 - Lx7 LINE L1 -802 6894 6398 7 1729 423 0 0 0 chr3 150011208 150011255 -9588528 + (TG)n Simple_repeat Simple_repeat 2 48 0 8 1729 291 349 68 102 chr3 150011277 150011513 -9588270 + MLT1E3 LTR MaLR 358 585 -39 9 1729 22 35 0 0 chr3 150011530 150011559 -9588224 + AT_rich Low_complexity Low_complexity 1 29 0 1 1729 234 335 74 49 chr3 150011830 150011993 -9587790 - LTR40a LTR ERVL -277 242 76 1 1729 826 341 128 14 chr3 150012265 150012857 -9586926 - Lx8 LINE L1 -9 7464 6805 1 1729 3054 234 60 144 chr3 150012956 150014081 -9585702 - RMER1B Other Other 0 1066 37 1 1729 765 193 22 16 chr3 150014392 150014576 -9585207 + Lx LINE L1 6465 6649 -5 1 1729 256 314 168 61 chr3 150015954 150016151 -9583632 - B4 SINE B4 -18 274 57 1 1729 581 332 58 19 chr3 150016479 150016804 -9582979 - Charlie7 DNA MER1_type -274 2338 2001 1 1729 393 341 67 50 chr3 150016828 150017007 -9582776 - B3A SINE B2 -16 182 1 1 1729 4153 128 50 19 chr3 150017532 150018360 -9581423 - RMER17B LTR ERVK 0 958 65 1 1729 225 0 0 0 chr3 150018361 150018386 -9581397 + (T)n Simple_repeat Simple_repeat 1 25 0 1 1729 896 41 0 0 chr3 150018412 150018533 -9581250 - B1_Mus2 SINE Alu 0 147 27 2 1729 375 162 29 14 chr3 150018527 150018596 -9581187 - RMER17B LTR ERVK -888 70 1 1 1729 400 325 92 17 chr3 150018670 150018964 -9580819 - L1MD3 LINE L1 -33 7962 7647 2 1729 242 258 48 67 chr3 150019622 150019726 -9580057 + MamGypLTR1d LTR Gypsy 694 795 -18 2 1729 363 361 33 28 chr3 150020296 150020478 -9579305 + MTEa LTR MaLR 5 187 -192 2 1729 485 274 17 0 chr3 150020656 150020773 -9579010 + ID_B1 SINE B4 103 221 -3 2 1729 930 210 59 10 chr3 150020829 150021031 -9578752 + B3 SINE B2 1 212 -4 2 1729 441 0 0 0 chr3 150022723 150022772 -9577011 + (TG)n Simple_repeat Simple_repeat 2 50 0 2 1729 1311 53 0 0 chr3 150022859 150023094 -9576689 + (TAGA)n Simple_repeat Simple_repeat 1 235 0 2 1729 1308 79 0 0 chr3 150023130 150023308 -9576475 + (TAGA)n Simple_repeat Simple_repeat 1 178 0 2 1729 375 60 0 0 chr3 150023501 150023551 -9576232 + (TG)n Simple_repeat Simple_repeat 1 50 0 2 1729 366 349 40 108 chr3 150024213 150024435 -9575348 + ID_B1 SINE B4 3 209 -15 2 1729 479 285 36 14 chr3 150024305 150024444 -9575339 + B1F SINE Alu 6 147 -2 3 1729 653 297 104 27 chr3 150024501 150024837 -9574946 + Lx6 LINE L1 7073 7434 -26 3 1729 272 348 45 84 chr3 150024883 150025062 -9574721 + B4 SINE B4 3 174 -118 3 1729 359 171 9 0 chr3 150025164 150025269 -9574514 + CT-rich Low_complexity Low_complexity 1 106 0 3 1729 286 261 0 0 chr3 150025374 150025443 -9574340 + (CA)n Simple_repeat Simple_repeat 1 69 0 3 1729 387 323 118 5 chr3 150025813 150026000 -9573783 - MIRb SINE MIR -25 243 36 3 1729 1075 78 0 38 chr3 150026438 150026624 -9573159 + (TTC)n Simple_repeat Simple_repeat 2 180 0 3 1729 291 191 0 0 chr3 150026627 150026690 -9573093 + CT-rich Low_complexity Low_complexity 1 63 0 3 1729 405 0 0 0 chr3 150026809 150026854 -9572929 + (TTTA)n Simple_repeat Simple_repeat 4 48 0 3 1729 413 294 88 84 chr3 150026860 150027168 -9572615 - Lx8 LINE L1 -12 7461 7153 3 1729 216 0 0 0 chr3 150028349 150028373 -9571410 + (CAA)n Simple_repeat Simple_repeat 1 24 0 4 1729 296 329 93 37 chr3 150029021 150029621 -9570162 - L1M4 LINE L1 -2985 3161 2528 4 1729 1595 260 60 40 chr3 150029851 150030352 -9569431 - RLTR17 LTR ERVK -73 619 109 4 1729 772 256 50 15 chr3 150032202 150032404 -9567379 - B3 SINE B2 -2 214 6 4 1729 225 94 0 0 chr3 150033981 150034013 -9565770 + (A)n Simple_repeat Simple_repeat 1 32 0 4 1729 2199 165 56 80 chr3 150034417 150034935 -9564848 - RLTR31A_Mm LTR ERVK 0 557 1 4 1729 27 0 0 0 chr3 150035361 150035388 -9564395 + AT_rich Low_complexity Low_complexity 1 27 0 4 1729 233 354 8 17 chr3 150035691 150035809 -9563974 + MER58A DNA MER1_type 50 166 -58 4 1729 225 0 0 0 chr3 150036446 150036471 -9563312 + (TG)n Simple_repeat Simple_repeat 2 26 0 4 1729 374 336 51 0 chr3 150036483 150036620 -9563163 - RSINE1 SINE B4 -17 148 5 4 1729 754 331 53 12 chr3 150037350 150037671 -9562112 + ORR1E LTR MaLR 26 359 0 5 1729 1674 161 75 0 chr3 150037733 150038055 -9561728 + Lx2 LINE L1 6651 6996 -1 5 1729 3105 52 0 0 chr3 150038700 150039081 -9560702 - L1Md_F2 LINE L1 -107 6475 6095 5 1729 675 243 9 23 chr3 150039144 150039314 -9560469 - Lx9 LINE L1 -1938 5706 5509 5 1729 700 243 108 40 chr3 150039548 150039844 -9559939 - Lx9 LINE L1 -354 5493 5178 5 1729 426 39 0 0 chr3 150040179 150040231 -9559552 + (CA)n Simple_repeat Simple_repeat 2 53 0 5 1729 949 331 35 12 chr3 150040232 150040660 -9559123 + Lx9 LINE L1 6362 6799 -845 5 1729 327 289 0 0 chr3 150040733 150040816 -9558967 + Lx9 LINE L1 6818 6900 -744 5 1729 499 304 46 60 chr3 150040938 150041190 -9558593 + Lx9 LINE L1 7263 7513 -131 5 1729 369 0 0 0 chr3 150041190 150041231 -9558552 + (TG)n Simple_repeat Simple_repeat 2 42 0 5 1729 499 304 46 60 chr3 150041231 150041345 -9558438 + Lx9 LINE L1 7514 7623 -21 5 1729 23 0 0 0 chr3 150041368 150041391 -9558392 + AT_rich Low_complexity Low_complexity 1 23 0 5 1729 3627 157 28 0 chr3 150042396 150043009 -9556774 + Lx3C LINE L1 6344 6973 -3 5 1729 42 0 0 0 chr3 150043011 150043053 -9556730 + AT_rich Low_complexity Low_complexity 1 42 0 5 1729 285 29 0 0 chr3 150043934 150043968 -9555815 + (TA)n Simple_repeat Simple_repeat 2 35 0 6 1729 260 202 55 46 chr3 150043986 150044095 -9555688 - Lx9 LINE L1 -130 7514 7405 6 1729 7790 160 25 42 chr3 150044082 150045468 -9554315 - Lx4A LINE L1 -41 7017 5654 6 1729 2674 77 20 0 chr3 150045468 150045820 -9553963 - RLTR10D LTR ERVK 0 359 1 6 1729 7790 152 15 83 chr3 150045820 150046194 -9553589 - Lx4A LINE L1 -1405 5653 5274 6 1729 1711 116 56 7 chr3 150046191 150046494 -9553289 + L1_Mur2 LINE L1 4288 4605 -1272 6 1729 656 188 36 36 chr3 150046494 150046632 -9553151 - RLTR17 LTR ERVK 0 692 555 6 1729 1640 138 60 79 chr3 150046634 150046987 -9552796 + L1_Mur2 LINE L1 4957 5302 -575 6 1729 2348 243 170 20 chr3 150048092 150048413 -9551370 + Lx6 LINE L1 6595 6951 -509 6 1729 405 58 0 0 chr3 150048413 150048465 -9551318 + (TG)n Simple_repeat Simple_repeat 2 53 0 6 1729 2348 243 170 20 chr3 150048465 150048873 -9550910 + Lx6 LINE L1 6952 7433 -27 6 1729 26 30 0 0 chr3 150048915 150048948 -9550835 + AT_rich Low_complexity Low_complexity 1 33 0 6 1729 4367 40 2 0 chr3 150048952 150049515 -9550268 + L1Md_F3 LINE L1 6042 6584 0 6 1729 1719 255 23 12 chr3 150049935 150050416 -9549367 - Lx9 LINE L1 -156 7488 7003 7 1729 1408 250 134 41 chr3 150050419 150051054 -9548729 + L1_Rod LINE L1 4939 5632 -215 7 1729 293 0 0 26 chr3 150051060 150051098 -9548685 + (TAA)n Simple_repeat Simple_repeat 2 38 0 7 1729 701 309 0 5 chr3 150051109 150051298 -9548485 - Lx9 LINE L1 -938 6706 6519 7 1729 296 243 108 0 chr3 150051289 150051363 -9548420 + Lx9 LINE L1 6641 6722 -922 7 1729 1055 98 14 0 chr3 150051384 150051527 -9548256 + B1_Mus2 SINE Alu 1 145 -2 7 1729 243 0 0 0 chr3 150051929 150051956 -9547827 + (CAAG)n Simple_repeat Simple_repeat 2 28 0 7 1729 1282 58 4 12 chr3 150051958 150052199 -9547584 + (GAAA)n Simple_repeat Simple_repeat 1 238 0 7 1729 989 101 12 17 chr3 150052201 150052373 -9547410 + (GGAA)n Simple_repeat Simple_repeat 3 173 0 7 1729 333 102 0 0 chr3 150052971 150053030 -9546753 + (TC)n Simple_repeat Simple_repeat 2 60 0 7 1729 200 42 0 0 chr3 150053030 150053054 -9546729 + (TA)n Simple_repeat Simple_repeat 2 25 0 7 1729 282 103 0 0 chr3 150053098 150053137 -9546646 - ORR1B1 LTR MaLR -4 325 287 8 1729 626 146 73 0 chr3 150053118 150053241 -9546542 + ORR1A3-int LTR MaLR 1147 1278 -685 8 1729 263 100 80 0 chr3 150053238 150053288 -9546495 - ORR1B1 LTR MaLR -275 54 1 8 1729 2616 143 28 155 chr3 150053289 150053894 -9545889 - ORR1B1-int LTR MaLR -1 1962 1435 8 1729 2832 134 52 4 chr3 150053897 150054586 -9545197 + Lx LINE L1 5271 6024 -630 8 1729 2842 121 80 6 chr3 150054590 150055065 -9544718 + Lx LINE L1 6138 6647 -7 8 1729 1860 150 13 0 chr3 150055078 150055384 -9544399 - ORR1B1-int LTR MaLR -1543 420 111 8 1729 576 161 16 56 chr3 150055364 150055489 -9544294 - ORR1B1 LTR MaLR -239 155 36 8 1729 487 156 32 8 chr3 150055986 150056109 -9543674 + (TA)n Simple_repeat Simple_repeat 2 127 0 8 1729 348 94 0 0 chr3 150056110 150056163 -9543620 + (GA)n Simple_repeat Simple_repeat 1 53 0 8 1729 1704 268 62 12 chr3 150056656 150057155 -9542628 + Lx6 LINE L1 6928 7451 -9 8 1729 30 69 0 0 chr3 150058272 150058330 -9541453 + AT_rich Low_complexity Low_complexity 1 58 0 8 1729 27 87 0 0 chr3 150058529 150058598 -9541185 + AT_rich Low_complexity Low_complexity 1 69 0 8 1729 396 88 0 0 chr3 150059854 150059911 -9539872 + (TG)n Simple_repeat Simple_repeat 2 58 0 8 1729 492 246 14 28 chr3 150060921 150061063 -9538720 - Lx7 LINE L1 -25 7671 7532 8 1729 307 271 174 39 chr3 150061206 150061436 -9538347 - RMER20A LTR ERVK -124 392 132 9 1729 384 77 0 0 chr3 150061577 150061629 -9538154 + (ATATG)n Simple_repeat Simple_repeat 2 53 0 9 1729 455 222 33 30 chr3 150061630 150061808 -9537975 - Lx7 LINE L1 -169 7527 7369 8 1729 540 0 0 0 chr3 150062494 150062554 -9537229 + (GA)n Simple_repeat Simple_repeat 1 60 0 9 1729 246 62 0 0 chr3 150063015 150063047 -9536736 + (A)n Simple_repeat Simple_repeat 1 32 0 9 1729 261 382 76 0 chr3 150063855 150063999 -9535784 - MER5A DNA MER1_type -32 157 3 9 1729 380 362 45 72 chr3 150064005 150064228 -9535555 + B4A SINE B4 2 218 -74 9 1729 574 91 10 10 chr3 150064289 150064389 -9535394 + (CA)n Simple_repeat Simple_repeat 1 100 0 9 1729 207 69 0 0 chr3 150064517 150064546 -9535237 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 9 1729 668 164 0 7 chr3 150064566 150064701 -9535082 + GA-rich Low_complexity Low_complexity 3 136 0 9 1729 318 26 0 0 chr3 150064706 150064745 -9535038 + (CAGA)n Simple_repeat Simple_repeat 2 40 0 9 1729 566 315 71 83 chr3 150065366 150065619 -9534164 - B4A SINE B4 -30 262 13 1 1729 1157 78 0 0 chr3 150065712 150065866 -9533917 + B2_Mm2 SINE B2 1 154 -41 1 1729 390 267 46 26 chr3 150065876 150066062 -9533721 - MLT2B5 LTR ERVL -358 196 1 1 1729 423 0 0 0 chr3 150066113 150066160 -9533623 + (TC)n Simple_repeat Simple_repeat 2 48 0 1 1729 297 51 0 0 chr3 150066160 150066198 -9533585 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 1729 218 188 0 0 chr3 150066211 150066259 -9533524 + (CAGA)n Simple_repeat Simple_repeat 3 50 0 1 1729 23 0 0 0 chr3 150066892 150066915 -9532868 + AT_rich Low_complexity Low_complexity 1 23 0 1 1729 184 359 50 25 chr3 150068045 150068125 -9531658 - L3 LINE CR1 -925 3564 3483 1 1729 572 286 23 28 chr3 150068489 150068665 -9531118 + RLTR28B LTR ERVL 17 191 -290 1 1729 1156 135 43 0 chr3 150068671 150068856 -9530927 + B2_Mm2 SINE B2 3 195 0 1 1729 527 309 83 80 chr3 150068897 150069185 -9530598 + RLTR28B LTR ERVL 168 456 -25 1 1729 324 281 24 88 chr3 150071813 150071938 -9527845 - L2c LINE L2 -1 3386 3270 1 1729 3635 88 4 6 chr3 150072457 150073044 -9526739 - Lx3_Mus LINE L1 -1048 5961 5380 1 1729 6129 128 33 8 chr3 150073044 150074061 -9525722 + Lx3_Mus LINE L1 5966 7008 -1 1 1729 360 194 11 62 chr3 150074153 150074242 -9525541 - B2_Mm2 SINE B2 -113 85 2 1 1729 797 309 49 80 chr3 150075057 150075384 -9524399 + ORR1E LTR MaLR 1 317 -42 1 1729 922 127 68 23 chr3 150075772 150075949 -9523834 + B2_Mm2 SINE B2 2 186 -9 1 1729 2589 183 105 14 chr3 150076305 150076865 -9522918 - RMER19C LTR ERVK 0 611 1 1 1729 294 29 0 0 chr3 150077390 150077425 -9522358 + (T)n Simple_repeat Simple_repeat 1 35 0 1 1730 1527 223 9 35 chr3 150077547 150077887 -9521896 - MTD LTR MaLR 0 419 89 1 1730 1018 80 7 0 chr3 150077873 150078010 -9521773 + B1_Mm SINE Alu 10 147 0 1 1730 891 152 6 17 chr3 150078035 150078215 -9521568 + A-rich Low_complexity Low_complexity 3 180 0 1 1730 356 190 93 65 chr3 150078218 150078325 -9521458 - MTD LTR MaLR -301 120 11 1 1730 25 0 0 0 chr3 150078337 150078362 -9521421 + AT_rich Low_complexity Low_complexity 1 25 0 1 1730 386 217 18 45 chr3 150079051 150079162 -9520621 - PB1D9 SINE Alu -12 108 1 1 1730 478 320 27 0 chr3 150079251 150079398 -9520385 + RSINE1 SINE B4 9 159 -6 1 1730 320 319 46 5 chr3 150080795 150080968 -9518815 - MTD LTR MaLR -12 407 196 1 1730 459 218 0 0 chr3 150080972 150081073 -9518710 - RMER19A LTR ERVK -632 105 5 1 1730 267 183 101 61 chr3 150081072 150081156 -9518627 - MTD LTR MaLR -289 105 16 1 1730 3274 46 0 5 chr3 150081156 150081567 -9518216 - L1Md_F2 LINE L1 0 6582 6174 1 1730 489 339 27 5 chr3 150081567 150081751 -9518032 - MTD LTR MaLR -229 190 3 1 1730 1097 105 70 0 chr3 150081967 150082139 -9517644 + RLTR9B LTR ERVK 1 184 -253 1 1730 246 364 95 18 chr3 150082143 150082311 -9517472 + MLT1G3 LTR MaLR 415 595 0 1 1730 3108 48 0 15 chr3 150083317 150083718 -9516065 + L1Md_F2 LINE L1 6187 6581 -1 1 1730 1302 171 24 4 chr3 150083866 150084112 -9515671 - Lx9 LINE L1 -622 7022 6772 1 1730 961 335 19 12 chr3 150084129 150084452 -9515331 - MTE2b LTR MaLR -54 325 1 1 1730 261 0 0 0 chr3 150085190 150085219 -9514564 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1 1730 1027 134 6 6 chr3 150086004 150086184 -9513599 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 1 1730 222 37 0 0 chr3 150086184 150086211 -9513572 + (TC)n Simple_repeat Simple_repeat 2 28 0 1 1730 2941 52 0 0 chr3 150086442 150086807 -9512976 - L1_Mus1 LINE L1 -508 6059 5695 1 1730 1520 86 9 0 chr3 150086868 150087089 -9512694 - Lx3_Mus LINE L1 -1 7008 6786 1 1730 21 0 0 0 chr3 150089799 150089820 -9509963 + AT_rich Low_complexity Low_complexity 1 21 0 1 1730 21 57 0 0 chr3 150090085 150090120 -9509663 + AT_rich Low_complexity Low_complexity 1 35 0 1 1730 301 275 0 14 chr3 150090566 150090636 -9509147 + HAL1-3A_ME LINE L1 1962 2030 -828 1 1730 22 0 0 0 chr3 150090781 150090803 -9508980 + AT_rich Low_complexity Low_complexity 1 22 0 1 1730 447 269 140 50 chr3 150090988 150091309 -9508474 + L3 LINE CR1 2590 2939 -1550 1 1730 306 169 0 0 chr3 150092185 150092250 -9507533 + (TATG)n Simple_repeat Simple_repeat 2 66 0 1 1730 378 0 0 0 chr3 150092858 150092900 -9506883 + (TA)n Simple_repeat Simple_repeat 2 43 0 1 1730 206 369 49 12 chr3 150093276 150093438 -9506345 + L3 LINE CR1 4009 4176 -313 1 1730 771 286 59 73 chr3 150093663 150094021 -9505762 + MTEb LTR MaLR 27 379 0 1 1730 243 273 9 116 chr3 150094123 150094235 -9505548 - MIRb SINE MIR -21 247 148 1 1730 291 340 56 7 chr3 150094659 150094801 -9504982 + MIRb SINE MIR 56 204 -64 1 1730 276 137 0 0 chr3 150097468 150097519 -9502264 + (TA)n Simple_repeat Simple_repeat 1 51 0 1 1730 23 0 0 0 chr3 150098527 150098550 -9501233 + AT_rich Low_complexity Low_complexity 1 23 0 1 1730 549 269 73 63 chr3 150099356 150099673 -9500110 + L1MA6 LINE L1 5514 5833 -467 1 1730 558 0 0 0 chr3 150099897 150099959 -9499824 + (TC)n Simple_repeat Simple_repeat 1 62 0 1 1730 275 287 17 92 chr3 150100053 150100172 -9499611 + RSINE1 SINE B4 56 165 0 1 1730 235 143 35 18 chr3 150100288 150100345 -9499438 + (TA)n Simple_repeat Simple_repeat 2 59 0 1 1730 477 0 0 0 chr3 150100345 150100398 -9499385 + (CA)n Simple_repeat Simple_repeat 2 54 0 1 1730 4819 130 16 18 chr3 150100699 150101483 -9498300 + Lx3A LINE L1 6183 6967 -14 1 1730 612 0 0 0 chr3 150101483 150101551 -9498232 + (TAGA)n Simple_repeat Simple_repeat 1 68 0 1 1730 25 83 0 0 chr3 150101906 150101966 -9497817 + AT_rich Low_complexity Low_complexity 1 60 0 1 1730 216 160 49 25 chr3 150103792 150103914 -9495869 + (TG)n Simple_repeat Simple_repeat 2 126 0 1 1730 180 164 46 46 chr3 150103977 150104130 -9495653 + (TG)n Simple_repeat Simple_repeat 1 153 0 1 1730 263 293 108 54 chr3 150104147 150104177 -9495606 - B4A SINE B4 0 292 263 1 1730 327 78 0 0 chr3 150104177 150104228 -9495555 + (CAGA)n Simple_repeat Simple_repeat 2 52 0 1 1730 423 0 0 0 chr3 150104230 150104277 -9495506 + (TG)n Simple_repeat Simple_repeat 1 47 0 1 1730 263 293 108 54 chr3 150104277 150104409 -9495374 - B4A SINE B4 -30 262 118 1 1730 342 355 33 0 chr3 150104456 150104577 -9495206 - B4A SINE B4 -166 126 2 1 1730 346 299 104 127 chr3 150104598 150104858 -9494925 + MLT1A0-int LTR MaLR 1452 1705 -30 1 1730 564 308 90 56 chr3 150104888 150105236 -9494547 + MLT1A0 LTR MaLR 4 364 -1 1 1730 278 289 26 11 chr3 150105565 150105719 -9494064 - MLT2B5 LTR ERVL -353 167 3 1 1730 271 328 61 48 chr3 150105957 150106287 -9493496 + L1MC4a LINE L1 6944 7277 -605 1 1730 2438 157 82 9 chr3 150106499 150106936 -9492847 + Lx2 LINE L1 6203 6671 -326 1 1730 3399 110 4 0 chr3 150106934 150107470 -9492313 - MusHAL1 LINE L1 -548 2164 1627 1 1730 1478 119 38 0 chr3 150107470 150107705 -9492078 + L1_Mus3 LINE L1 6374 6617 -21 1 1730 2009 133 15 12 chr3 150107718 150108053 -9491730 + Lx LINE L1 6310 6645 -9 1 1730 207 0 0 0 chr3 150108086 150108109 -9491674 + (A)n Simple_repeat Simple_repeat 1 23 0 1 1730 22 35 0 0 chr3 150108212 150108241 -9491542 + AT_rich Low_complexity Low_complexity 1 29 0 1 1730 1854 63 99 0 chr3 150108241 150108494 -9491289 - L1Md_F2 LINE L1 -84 5799 5522 1 1730 6015 67 5 6 chr3 150108494 150109287 -9490496 + L1Md_F2 LINE L1 5789 6580 -2 1 1730 26 0 0 0 chr3 150109287 150109313 -9490470 + AT_rich Low_complexity Low_complexity 1 26 0 1 1730 31 0 0 0 chr3 150109359 150109390 -9490393 + AT_rich Low_complexity Low_complexity 1 31 0 1 1730 267 54 0 0 chr3 150109390 150109427 -9490356 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 1730 385 270 123 11 chr3 150109512 150109699 -9490084 + L1MC4a LINE L1 7581 7788 -94 1 1730 21 36 0 0 chr3 150110177 150110205 -9489578 + AT_rich Low_complexity Low_complexity 1 28 0 1 1730 299 130 19 0 chr3 150110699 150110753 -9489030 + (TCTCC)n Simple_repeat Simple_repeat 1 55 0 1 1730 327 296 98 81 chr3 150111000 150111173 -9488610 - MER2B DNA MER2_type -5 331 156 1 1730 29 28 0 0 chr3 150111230 150111266 -9488517 + AT_rich Low_complexity Low_complexity 1 36 0 1 1730 223 238 0 0 chr3 150112071 150112113 -9487670 + polypurine Low_complexity Low_complexity 3 44 0 1 1730 905 168 6 0 chr3 150112114 150112293 -9487490 + GA-rich Low_complexity Low_complexity 1 180 0 1 1730 246 160 0 0 chr3 150112329 150112379 -9487404 + GA-rich Low_complexity Low_complexity 2 51 0 1 1730 314 243 43 0 chr3 150113253 150113323 -9486460 + MER82 DNA MER2_type 7 79 -574 1 1730 195 129 0 0 chr3 150113417 150113448 -9486335 + (TTA)n Simple_repeat Simple_repeat 2 32 0 1 1730 24 32 0 0 chr3 150113983 150114014 -9485769 + AT_rich Low_complexity Low_complexity 1 31 0 1 1730 564 361 31 11 chr3 150114110 150114466 -9485317 + MLT1B LTR MaLR 28 390 0 1 1730 1061 285 30 43 chr3 150115208 150115601 -9484182 + Lx8 LINE L1 6263 6650 -823 1 1730 458 279 162 5 chr3 150115628 150115826 -9483957 + Lx8 LINE L1 6724 6952 -521 1 1730 657 295 73 48 chr3 150115897 150116268 -9483515 + Lx8 LINE L1 7058 7437 -36 1 1730 937 95 0 98 chr3 150116282 150116296 -9483487 - B1_Mus2 SINE Alu 0 147 137 1 1730 570 51 0 0 chr3 150116296 150116374 -9483409 + (TTTTG)n Simple_repeat Simple_repeat 2 79 0 1 1730 937 95 0 98 chr3 150116374 150116522 -9483261 - B1_Mus2 SINE Alu -11 136 1 1 1730 407 278 75 40 chr3 150116544 150116743 -9483040 + B3 SINE B2 5 210 -6 1 1730 929 323 72 28 chr3 150116819 150117249 -9482534 + Lx8 LINE L1 6788 7236 -237 1 1730 23 0 0 0 chr3 150118396 150118419 -9481364 + AT_rich Low_complexity Low_complexity 1 23 0 1 1730 213 121 0 0 chr3 150118534 150118567 -9481216 + (TGG)n Simple_repeat Simple_repeat 1 33 0 1 1730 274 157 0 24 chr3 150118585 150118670 -9481113 + (TG)n Simple_repeat Simple_repeat 2 84 0 1 1730 559 359 62 4 chr3 150118691 150118951 -9480832 - B4A SINE B4 -7 285 11 1 1730 444 322 35 61 chr3 150120936 150121164 -9478619 - RMER15 LTR ERVL -55 520 299 1 1730 230 81 27 0 chr3 150121765 150121802 -9477981 + (CAAAA)n Simple_repeat Simple_repeat 2 39 0 1 1730 256 346 28 28 chr3 150122509 150122616 -9477167 - ID_B1 SINE B4 -14 210 104 1 1730 216 0 0 0 chr3 150123663 150123687 -9476096 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 1 1730 295 314 38 0 chr3 150124009 150124114 -9475669 + B4A SINE B4 137 245 -47 1 1730 278 35 49 49 chr3 150124493 150124554 -9475229 + (TTTTG)n Simple_repeat Simple_repeat 5 65 0 1 1730 2331 114 11 3 chr3 150124746 150125107 -9474676 - L1_Mus3 LINE L1 -7 6631 6268 1 1730 290 320 10 0 chr3 150125662 150125762 -9474021 - L1M4b LINE L1 -554 6490 6390 2 1730 477 0 0 0 chr3 150125848 150125901 -9473882 + (TG)n Simple_repeat Simple_repeat 2 54 0 2 1730 317 266 35 14 chr3 150125978 150126119 -9473664 - L1M4b LINE L1 -826 6180 6037 2 1730 378 0 0 0 chr3 150126330 150126372 -9473411 + (TC)n Simple_repeat Simple_repeat 1 42 0 2 1730 441 0 0 0 chr3 150126372 150126420 -9473363 + (CA)n Simple_repeat Simple_repeat 1 49 0 2 1730 236 304 0 42 chr3 150126463 150126535 -9473248 - MER21B LTR ERV1 -109 754 686 2 1730 357 133 31 4 chr3 150127123 150127192 -9472591 + ORR1B1 LTR MaLR 1 62 -332 2 1730 2115 182 13 13 chr3 150127229 150127623 -9472160 + ORR1B1 LTR MaLR 1 394 0 2 1730 284 298 57 24 chr3 150128072 150128310 -9471473 - L1MD LINE L1 -3057 3086 2843 2 1730 242 281 43 48 chr3 150128862 150129049 -9470734 - L1M4b LINE L1 -3825 3181 2996 2 1730 364 325 97 39 chr3 150129379 150129760 -9470023 - L1M4b LINE L1 -6244 1090 688 2 1730 24 53 0 0 chr3 150130401 150130439 -9469344 + AT_rich Low_complexity Low_complexity 1 38 0 2 1730 21 0 0 0 chr3 150130460 150130481 -9469302 + AT_rich Low_complexity Low_complexity 1 21 0 2 1730 518 67 13 0 chr3 150130944 150131019 -9468764 + (TG)n Simple_repeat Simple_repeat 2 77 0 2 1730 1869 152 57 9 chr3 150131031 150131362 -9468421 - ORR1B1 LTR MaLR -8 386 40 2 1730 978 93 0 0 chr3 150131375 150131514 -9468269 + (CA)n Simple_repeat Simple_repeat 2 140 0 2 1730 425 297 0 56 chr3 150131743 150131868 -9467915 + ID_B1 SINE B4 88 205 -19 2 1730 358 260 33 153 chr3 150131868 150131893 -9467890 + B1F2 SINE Alu 7 138 -11 2 1730 498 17 0 0 chr3 150132297 150132356 -9467427 + (TC)n Simple_repeat Simple_repeat 2 60 0 2 1730 638 272 30 90 chr3 150132367 150132551 -9467232 - Lx7 LINE L1 -45 7651 7486 2 1730 180 0 0 0 chr3 150132551 150132571 -9467212 + (CA)n Simple_repeat Simple_repeat 1 20 0 2 1730 638 272 30 90 chr3 150132571 150132786 -9466997 - Lx7 LINE L1 -211 7485 7276 2 1730 22 56 0 0 chr3 150134089 150134125 -9465658 + AT_rich Low_complexity Low_complexity 1 36 0 2 1730 588 62 0 0 chr3 150135503 150135584 -9464199 + (TG)n Simple_repeat Simple_repeat 2 82 0 2 1730 238 230 34 22 chr3 150135812 150135901 -9463882 + (TCTA)n Simple_repeat Simple_repeat 4 93 0 2 1730 245 128 21 0 chr3 150136893 150136940 -9462843 + (TCC)n Simple_repeat Simple_repeat 1 48 0 2 1730 342 0 0 0 chr3 150136940 150136978 -9462805 + (TTA)n Simple_repeat Simple_repeat 1 38 0 2 1730 2224 111 191 11 chr3 150137465 150137910 -9461873 - RLTR47_MM LTR ERV1 -3 529 5 2 1730 342 182 15 0 chr3 150138187 150138253 -9461530 + L1_Mm LINE L1 5089 5155 -728 2 1730 13257 96 27 0 chr3 150138264 150140772 -9459011 - L1Md_F LINE L1 -2729 3154 577 2 1730 2336 226 72 35 chr3 150140770 150141452 -9458331 - L1Md_F LINE L1 -5493 1026 320 2 1730 1989 195 126 16 chr3 150141460 150141951 -9457832 - RLTR25B LTR ERVK -483 545 1 2 1730 300 262 35 35 chr3 150141951 150142038 -9457745 - RLTR25A LTR ERVK -1015 88 2 2 1730 231 367 0 0 chr3 150142436 150142515 -9457268 - B3A SINE B2 -113 85 7 2 1730 26 30 0 0 chr3 150142972 150143005 -9456778 + AT_rich Low_complexity Low_complexity 1 33 0 2 1730 543 101 0 0 chr3 150143995 150144074 -9455709 + (TG)n Simple_repeat Simple_repeat 1 79 0 2 1730 262 276 70 47 chr3 150144930 150145059 -9454724 - MER34A LTR ERV1 -16 555 424 2 1730 350 252 7 0 chr3 150145072 150145219 -9454564 + (TG)n Simple_repeat Simple_repeat 1 148 0 2 1730 375 241 25 107 chr3 150145303 150145424 -9454359 + RMER13B LTR ERVK 1 111 -797 2 1730 2584 291 80 24 chr3 150145950 150146145 -9453638 - Lx6 LINE L1 -59 7401 7208 2 1730 1113 270 61 72 chr3 150146145 150146656 -9453127 + RLTR16 LTR ERVK 1 505 0 2 1730 2584 281 60 40 chr3 150146656 150147840 -9451943 - Lx6 LINE L1 -253 7207 5751 2 1730 4175 68 17 0 chr3 150147840 150148380 -9451403 - L1_Mus1 LINE L1 0 6567 6019 2 1730 2341 273 45 52 chr3 150148380 150148519 -9451264 - Lx6 LINE L1 -1300 5750 5624 2 1730 23 0 0 0 chr3 150148531 150148554 -9451229 + AT_rich Low_complexity Low_complexity 1 23 0 2 1730 504 0 0 0 chr3 150149391 150149447 -9450336 + (TG)n Simple_repeat Simple_repeat 1 56 0 2 1730 322 328 99 75 chr3 150150155 150150356 -9449427 + B3 SINE B2 3 208 -8 2 1730 389 179 51 13 chr3 150150414 150150493 -9449290 - Lx9 LINE L1 -432 7212 7131 2 1730 632 239 43 34 chr3 150150493 150150623 -9449160 + Lx9 LINE L1 7402 7534 -110 2 1730 261 0 0 0 chr3 150150623 150150652 -9449131 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 2 1730 632 239 43 34 chr3 150150652 150150755 -9449028 + Lx9 LINE L1 7535 7637 -7 2 1730 394 245 30 20 chr3 150151319 150151419 -9448364 + RLTR41 LTR ERV1 280 380 -66 2 1730 340 284 21 21 chr3 150151526 150151704 -9448079 + GA-rich Low_complexity Low_complexity 1 178 0 2 1730 642 140 89 68 chr3 150153162 150153265 -9446518 - Lx9 LINE L1 -201 7443 7339 2 1730 2498 102 97 3 chr3 150153265 150153648 -9446135 + BGLII LTR ERVK 1 419 -2 2 1730 642 140 89 68 chr3 150153648 150153690 -9446093 - Lx9 LINE L1 -306 7338 7295 2 1730 21 0 0 0 chr3 150154339 150154360 -9445423 + AT_rich Low_complexity Low_complexity 1 21 0 2 1730 365 278 11 0 chr3 150154408 150154498 -9445285 - RCHARR1 DNA MER1_type -775 199 109 2 1730 681 123 0 21 chr3 150154579 150154720 -9445063 + (TA)n Simple_repeat Simple_repeat 2 139 0 2 1730 217 268 125 14 chr3 150154790 150154862 -9444921 - BC1_Mm scRNA scRNA -67 85 6 2 1730 350 294 100 9 chr3 150154868 150154978 -9444805 - PB1 SINE Alu -2 125 6 2 1730 220 254 109 16 chr3 150155126 150155190 -9444593 + ID4 SINE ID 10 79 -4 2 1730 1145 227 112 25 chr3 150155264 150155666 -9444117 + RCHARR1 DNA MER1_type 523 959 -15 2 1730 239 0 32 0 chr3 150156246 150156277 -9443506 + (CA)n Simple_repeat Simple_repeat 1 32 0 2 1730 1246 220 302 16 chr3 150156329 150156776 -9443007 - RMER15 LTR ERVL 0 575 1 2 1730 1666 162 38 9 chr3 150157387 150157705 -9442078 + Lx LINE L1 6316 6642 -12 2 1730 236 298 9 28 chr3 150158699 150158806 -9440977 - L1MB1 LINE L1 -64 6270 6166 2 1730 344 262 26 10 chr3 150158821 150159143 -9440640 + CT-rich Low_complexity Low_complexity 1 327 0 2 1730 760 306 115 35 chr3 150159194 150159801 -9439982 - L1MB1 LINE L1 -92 6097 5442 2 1730 336 224 111 7 chr3 150159951 150160086 -9439697 - L1MB1 LINE L1 -784 5356 5208 2 1730 213 254 67 17 chr3 150161003 150161063 -9438720 - L2a LINE L2 0 3426 3364 2 1730 444 19 0 0 chr3 150161445 150161498 -9438285 + (CAGAGA)n Simple_repeat Simple_repeat 2 54 0 2 1730 312 291 181 12 chr3 150161766 150161926 -9437857 + B4 SINE B4 17 203 -89 2 1730 404 275 28 0 chr3 150162078 150162187 -9437596 + Lx9 LINE L1 7056 7167 -477 2 1730 366 175 0 0 chr3 150162379 150162459 -9437324 + (CA)n Simple_repeat Simple_repeat 1 80 0 2 1730 532 167 0 34 chr3 150163406 150163555 -9436228 + GA-rich Low_complexity Low_complexity 3 146 0 2 1730 228 221 137 69 chr3 150164726 150164828 -9434955 + MIR SINE MIR 100 208 -54 2 1730 791 284 14 9 chr3 150164991 150165204 -9434579 - B3 SINE B2 -2 214 1 2 1730 28 0 0 0 chr3 150165332 150165360 -9434423 + AT_rich Low_complexity Low_complexity 1 28 0 2 1730 357 197 0 0 chr3 150165396 150165472 -9434311 + (TA)n Simple_repeat Simple_repeat 2 77 0 2 1730 294 95 0 0 chr3 150165499 150165541 -9434242 + (CA)n Simple_repeat Simple_repeat 1 42 0 2 1730 898 138 12 0 chr3 150165740 150165900 -9433883 + (CATATA)n Simple_repeat Simple_repeat 3 164 0 2 1730 188 111 28 0 chr3 150166108 150166144 -9433639 + (CATA)n Simple_repeat Simple_repeat 2 38 0 2 1730 1098 98 40 0 chr3 150166313 150166487 -9433296 - L1_Mus3 LINE L1 -10 6628 6448 2 1730 21 36 0 0 chr3 150166621 150166649 -9433134 + AT_rich Low_complexity Low_complexity 1 28 0 2 1730 23 33 0 0 chr3 150166684 150166714 -9433069 + AT_rich Low_complexity Low_complexity 1 30 0 2 1730 23 0 0 0 chr3 150167541 150167564 -9432219 + AT_rich Low_complexity Low_complexity 1 23 0 2 1730 3866 205 47 10 chr3 150169074 150169864 -9429919 - Lx4B LINE L1 -6 7052 6234 2 1730 1215 203 42 19 chr3 150169843 150170155 -9429628 + Lx4B LINE L1 5916 6234 -824 2 1730 938 76 8 0 chr3 150170237 150170369 -9429414 + (TTTTC)n Simple_repeat Simple_repeat 3 135 0 2 1730 5611 163 25 3 chr3 150170377 150171369 -9428414 - Lx2 LINE L1 -4 6993 5980 2 1730 2280 152 5 0 chr3 150171370 150171746 -9428037 - L1_Mm LINE L1 -92 5791 5414 2 1730 266 335 49 49 chr3 150171746 150171909 -9427874 + RMER13A LTR ERVK 698 860 0 2 1730 227 279 101 0 chr3 150172030 150172109 -9427674 - PB1D10 SINE Alu -1 116 30 2 1730 838 260 67 24 chr3 150172428 150172802 -9426981 - Lx7 LINE L1 0 7696 7307 2 1730 1112 119 6 0 chr3 150172805 150172982 -9426801 + (TTC)n Simple_repeat Simple_repeat 1 178 0 2 1730 514 136 0 48 chr3 150172982 150173129 -9426654 + CT-rich Low_complexity Low_complexity 3 142 0 2 1730 1480 254 45 7 chr3 150173130 150173554 -9426229 - Lx7 LINE L1 -405 7291 6852 2 1730 1058 102 14 0 chr3 150173825 150173972 -9425811 + B1_Mur4 SINE Alu 1 149 -1 2 1730 653 0 0 13 chr3 150174000 150174078 -9425705 + (GA)n Simple_repeat Simple_repeat 2 78 0 2 1730 201 250 0 0 chr3 150174477 150174537 -9425246 + T-rich Low_complexity Low_complexity 1 60 0 2 1730 23 101 0 0 chr3 150174541 150174620 -9425163 + AT_rich Low_complexity Low_complexity 1 79 0 2 1730 533 227 13 39 chr3 150174755 150174911 -9424872 + L1_Rod LINE L1 5696 5847 0 2 1730 250 259 0 0 chr3 150174916 150174974 -9424809 + RMER6C LTR ERVK 3 60 -660 2 1730 1992 176 8 18 chr3 150174979 150175229 -9424554 + RMER6-int LTR ERVK 251 500 -2677 2 1730 2921 40 0 0 chr3 150175229 150175289 -9424494 - ORR1A0 LTR MaLR 0 346 287 2 1730 210 37 0 0 chr3 150175289 150175316 -9424467 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2 1730 2921 40 0 0 chr3 150175316 150175601 -9424182 - ORR1A0 LTR MaLR -60 286 2 2 1730 7798 168 53 29 chr3 150175601 150177239 -9422544 + RMER6-int LTR ERVK 501 2221 -956 2 1730 180 0 0 0 chr3 150177731 150177751 -9422032 + (TTTTA)n Simple_repeat Simple_repeat 4 23 0 2 1730 529 246 0 80 chr3 150179196 150179333 -9420450 + RMER6-int LTR ERVK 2209 2334 -843 2 1730 2545 187 77 18 chr3 150179441 150179985 -9419798 + RMER6C LTR ERVK 113 688 -2 2 1730 324 364 41 17 chr3 150179985 150180276 -9419507 + Lx7 LINE L1 5876 6173 -1523 2 1730 2669 92 58 0 chr3 150180663 150181042 -9418741 - L1_Mus4 LINE L1 -4 6632 6232 2 1730 1534 323 44 30 chr3 150181042 150181747 -9418036 + Lx7 LINE L1 6619 7333 -363 2 1730 588 29 0 0 chr3 150182788 150182858 -9416925 + (TA)n Simple_repeat Simple_repeat 2 71 0 2 1730 4642 44 2 2 chr3 150183378 150183947 -9415836 + L1Md_F2 LINE L1 6014 6582 0 2 1730 21 36 0 0 chr3 150186343 150186371 -9413412 + AT_rich Low_complexity Low_complexity 1 28 0 2 1730 282 360 11 33 chr3 150186372 150186553 -9413230 - Lx8 LINE L1 -4 7469 7293 2 1730 22 35 0 0 chr3 150186841 150186870 -9412913 + AT_rich Low_complexity Low_complexity 1 29 0 3 1730 22 35 0 0 chr3 150187057 150187086 -9412697 + AT_rich Low_complexity Low_complexity 1 29 0 3 1730 749 230 42 6 chr3 150187129 150187295 -9412488 - B2_Mm2 SINE B2 -23 172 1 3 1730 276 53 0 0 chr3 150188229 150188267 -9411516 + (CAAAC)n Simple_repeat Simple_repeat 2 39 0 3 1730 361 328 56 97 chr3 150188683 150188879 -9410904 + B3A SINE B2 7 194 -4 3 1730 23 54 0 0 chr3 150189055 150189092 -9410691 + AT_rich Low_complexity Low_complexity 1 37 0 3 1730 303 392 80 9 chr3 150189282 150189506 -9410277 + MER44B DNA MER2_type 1 240 -310 3 1730 33 25 0 0 chr3 150189728 150189768 -9410015 + AT_rich Low_complexity Low_complexity 1 40 0 3 1730 7197 191 5 27 chr3 150190379 150190627 -9409156 + L1_Mus4 LINE L1 4482 4728 -1158 3 1730 306 0 0 0 chr3 150190627 150190661 -9409122 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 3 1730 7197 156 3 14 chr3 150190661 150192603 -9407180 + L1_Mus4 LINE L1 4729 6634 -2 3 1730 834 299 62 8 chr3 150193004 150193388 -9406395 + Lx9 LINE L1 7239 7643 -1 3 1730 528 176 0 0 chr3 150193627 150193729 -9406054 + GA-rich Low_complexity Low_complexity 2 103 0 3 1730 515 292 126 52 chr3 150194869 150195179 -9404604 + RMER13A LTR ERVK 111 443 -417 3 1730 6401 124 41 7 chr3 150195326 150195370 -9404413 - Lx LINE L1 -6 6648 6605 3 1730 2104 182 98 5 chr3 150195370 150195778 -9404005 + RLTR41 LTR ERV1 1 446 0 3 1730 23572 149 29 5 chr3 150195778 150197922 -9401861 - Lx LINE L1 -50 6604 4424 3 1730 504 0 0 0 chr3 150197922 150197978 -9401805 + (TA)n Simple_repeat Simple_repeat 2 57 0 3 1730 23572 169 19 4 chr3 150197978 150200960 -9398823 - Lx LINE L1 -1460 4423 1388 3 1730 1132 155 0 0 chr3 150200969 150201156 -9398627 - B2_Mm2 SINE B2 -2 193 7 3 1730 5897 127 16 4 chr3 150201156 150202164 -9397619 - L1VL4 LINE L1 -2513 1046 25 3 1730 21 0 0 0 chr3 150202327 150202348 -9397435 + AT_rich Low_complexity Low_complexity 1 21 0 3 1730 411 21 0 0 chr3 150202418 150202466 -9397317 + (GA)n Simple_repeat Simple_repeat 1 48 0 3 1730 21 0 0 0 chr3 150202688 150202709 -9397074 + AT_rich Low_complexity Low_complexity 1 21 0 3 1730 26 0 0 0 chr3 150202826 150202852 -9396931 + AT_rich Low_complexity Low_complexity 1 26 0 3 1730 271 195 78 0 chr3 150202928 150203005 -9396778 - Lx8 LINE L1 -2 7471 7389 3 1730 33 94 0 0 chr3 150203080 150203176 -9396607 + AT_rich Low_complexity Low_complexity 1 96 0 3 1730 1162 232 88 9 chr3 150204827 150205157 -9394626 - Lx9 LINE L1 -389 7255 6900 3 1730 325 208 0 13 chr3 150205168 150205246 -9394537 + Lx9 LINE L1 7355 7431 -213 3 1730 297 111 54 27 chr3 150205261 150205335 -9394448 + (TAGA)n Simple_repeat Simple_repeat 4 79 0 3 1730 400 165 19 19 chr3 150205335 150205440 -9394343 + (CAGAGA)n Simple_repeat Simple_repeat 2 106 0 3 1730 267 226 122 0 chr3 150205488 150205603 -9394180 + Lx9 LINE L1 7510 7638 -6 3 1730 2008 230 71 97 chr3 150206318 150207039 -9392744 + Lx5 LINE L1 5642 6343 -707 3 1730 285 244 57 23 chr3 150207549 150207637 -9392146 - B4 SINE B4 -199 93 3 3 1731 442 281 33 0 chr3 150208762 150208883 -9390900 + Lx9 LINE L1 6926 7050 -594 3 1731 383 281 120 36 chr3 150209083 150209275 -9390508 + B3 SINE B2 3 210 -6 3 1731 32 0 0 0 chr3 150210484 150210516 -9389267 + AT_rich Low_complexity Low_complexity 1 32 0 3 1731 296 217 11 0 chr3 150210838 150210930 -9388853 + (TA)n Simple_repeat Simple_repeat 2 94 0 3 1731 671 151 6 0 chr3 150210931 150211090 -9388693 + GA-rich Low_complexity Low_complexity 1 160 0 3 1731 513 76 0 0 chr3 150211249 150211328 -9388455 + (TCTCTG)n Simple_repeat Simple_repeat 6 84 0 3 1731 26 30 0 0 chr3 150211523 150211556 -9388227 + AT_rich Low_complexity Low_complexity 1 33 0 3 1731 747 235 94 8 chr3 150211826 150212092 -9387691 + RMER10B LTR ERVL 4 292 -106 3 1731 693 66 0 0 chr3 150212104 150212195 -9387588 + (TCCCC)n Simple_repeat Simple_repeat 2 92 0 3 1731 675 267 40 15 chr3 150212195 150212393 -9387390 + RMER10B LTR ERVL 195 397 -1 3 1731 287 0 53 0 chr3 150213129 150213167 -9386616 + (TTTA)n Simple_repeat Simple_repeat 3 42 0 3 1731 1180 56 0 0 chr3 150213167 150213309 -9386474 - B1_Mm SINE Alu -4 143 2 3 1731 225 309 101 47 chr3 150213663 150213792 -9385991 - RLTR22_Mus LTR ERVK -187 1621 1486 3 1731 25 0 0 0 chr3 150214751 150214776 -9385007 + AT_rich Low_complexity Low_complexity 1 25 0 3 1731 327 314 86 21 chr3 150216680 150216820 -9382963 + MLT1B LTR MaLR 188 336 -54 3 1731 5634 125 85 5 chr3 150217257 150218132 -9381651 - Lx3C LINE L1 -7 6969 6074 3 1731 495 0 0 0 chr3 150218132 150218187 -9381596 + (TCCC)n Simple_repeat Simple_repeat 3 57 0 3 1731 5634 125 85 5 chr3 150218187 150218244 -9381539 - Lx3C LINE L1 -903 6073 5964 3 1731 298 206 31 31 chr3 150218487 150218647 -9381136 + (TTG)n Simple_repeat Simple_repeat 2 161 0 3 1731 21 0 0 0 chr3 150219531 150219552 -9380231 + AT_rich Low_complexity Low_complexity 1 21 0 3 1731 445 346 8 0 chr3 150219924 150220057 -9379726 + RSINE1 SINE B4 8 141 -24 3 1731 273 57 0 0 chr3 150220058 150220093 -9379690 + (CA)n Simple_repeat Simple_repeat 2 36 0 3 1731 663 237 19 57 chr3 150220276 150220480 -9379303 + RMER17C LTR ERVK 1 193 -217 3 1731 789 41 0 0 chr3 150220480 150220577 -9379206 + (TCC)n Simple_repeat Simple_repeat 1 97 0 3 1731 663 243 26 72 chr3 150220577 150220665 -9379118 + RMER17C LTR ERVK 194 254 -156 3 1731 596 222 50 120 chr3 150220717 150221075 -9378708 + RMER17C LTR ERVK 77 409 -1 3 1731 226 344 108 8 chr3 150221642 150221771 -9378012 - B1F1 SINE Alu -5 144 3 3 1731 1165 62 0 0 chr3 150222230 150222376 -9377407 + B1_Mm SINE Alu 1 146 -1 3 1731 7267 120 31 11 chr3 150223818 150224971 -9374812 - Lx3A LINE L1 -16 6965 5790 3 1731 1947 96 44 0 chr3 150224973 150225244 -9374539 + Lx3A LINE L1 5447 5729 -157 3 1731 1565 44 5 14 chr3 150225244 150225451 -9374332 - L1Md_F3 LINE L1 -8 6576 6372 3 1731 1533 34 0 0 chr3 150225451 150225630 -9374153 + L1Md_F3 LINE L1 6111 6289 -295 3 1731 459 234 30 78 chr3 150225665 150225832 -9373951 - RLTR10A LTR ERVK -113 298 140 3 1731 307 240 222 60 chr3 150226060 150226325 -9373458 + MTC LTR MaLR 57 419 0 3 1731 31 26 0 0 chr3 150226605 150226643 -9373140 + AT_rich Low_complexity Low_complexity 1 38 0 3 1731 1119 30 0 0 chr3 150227148 150227283 -9372500 + (TC)n Simple_repeat Simple_repeat 2 136 0 3 1731 198 91 0 0 chr3 150227283 150227316 -9372467 + (TG)n Simple_repeat Simple_repeat 2 34 0 3 1731 307 280 164 15 chr3 150227692 150227826 -9371957 - HAL1-3A_ME LINE L1 -417 2441 2288 3 1731 234 171 0 41 chr3 150227826 150227899 -9371884 + C-rich Low_complexity Low_complexity 5 74 0 3 1731 249 329 31 50 chr3 150227927 150228087 -9371696 + LTR29 LTR ERV1 184 340 -282 3 1731 2658 52 38 0 chr3 150232591 150232935 -9366848 - L1_Mus2 LINE L1 -1 6565 6209 3 1731 274 376 70 50 chr3 150232939 150233138 -9366645 - B3 SINE B2 -13 203 1 3 1731 424 100 0 70 chr3 150233682 150233768 -9366015 - L1Md_F2 LINE L1 0 6582 6503 3 1731 1643 151 27 8 chr3 150234808 150235127 -9364656 - ORR1B1 LTR MaLR -25 369 1 3 1731 270 329 0 0 chr3 150235127 150235193 -9364590 + PB1D10 SINE Alu 37 102 -15 3 1731 192 77 0 0 chr3 150235859 150235885 -9363898 + (CAT)n Simple_repeat Simple_repeat 2 27 0 3 1731 1876 46 17 4 chr3 150236330 150236569 -9363214 - L1_Mus1 LINE L1 -241 6326 6085 3 1731 1766 72 4 4 chr3 150236569 150236806 -9362977 + L1_Mus1 LINE L1 6331 6567 0 3 1731 25 0 0 0 chr3 150236842 150236867 -9362916 + AT_rich Low_complexity Low_complexity 1 25 0 3 1731 300 282 47 12 chr3 150236909 150236995 -9362788 + MLT1A1 LTR MaLR 25 113 -295 3 1731 591 15 0 0 chr3 150237129 150237197 -9362586 + (TC)n Simple_repeat Simple_repeat 1 68 0 3 1731 313 316 83 32 chr3 150237591 150237807 -9361976 + Charlie1a DNA MER1_type 630 856 -599 3 1731 568 312 142 19 chr3 150239506 150239774 -9360009 - MLT2C2 LTR ERVL -95 369 69 3 1731 462 299 124 66 chr3 150240216 150240442 -9359341 - MTE2a LTR MaLR -140 239 1 3 1731 327 342 34 8 chr3 150240644 150240762 -9359021 - MLT1A1 LTR MaLR -113 295 175 3 1731 23 33 0 0 chr3 150241355 150241385 -9358398 + AT_rich Low_complexity Low_complexity 1 30 0 3 1731 3207 110 8 0 chr3 150242465 150242945 -9356838 - L1_Mm LINE L1 -438 5445 4962 3 1731 3263 63 0 0 chr3 150242946 150243356 -9356427 + L1_Mus1 LINE L1 6158 6567 0 3 1731 1629 174 100 18 chr3 150243370 150243727 -9356056 - Lx2A1 LINE L1 -11 6997 6589 3 1731 255 31 0 0 chr3 150243954 150243986 -9355797 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 3 1731 246 32 0 0 chr3 150244060 150244091 -9355692 + (TG)n Simple_repeat Simple_repeat 2 32 0 3 1731 271 271 100 0 chr3 150244098 150244168 -9355615 - B3A SINE B2 -47 151 75 3 1731 216 97 0 0 chr3 150246465 150246496 -9353287 + (TATG)n Simple_repeat Simple_repeat 2 32 0 3 1731 421 284 39 0 chr3 150247559 150247686 -9352097 - Lx9 LINE L1 -636 7008 6877 3 1731 388 348 42 69 chr3 150247859 150248075 -9351708 + B4A SINE B4 83 292 0 3 1731 1198 62 11 0 chr3 150248080 150248257 -9351526 + (CA)n Simple_repeat Simple_repeat 1 179 0 3 1731 198 250 0 0 chr3 150248551 150248607 -9351176 + GA-rich Low_complexity Low_complexity 2 57 0 3 1731 1124 255 127 5 chr3 150249802 150249924 -9349859 - Lx9 LINE L1 -2 7642 7485 3 1731 441 54 0 0 chr3 150249924 150249980 -9349803 + (TA)n Simple_repeat Simple_repeat 2 57 0 3 1731 1124 255 127 5 chr3 150249980 150250259 -9349524 - Lx9 LINE L1 -160 7484 7193 3 1731 1634 217 55 3 chr3 150250249 150250628 -9349155 + Lx9 LINE L1 6801 7199 -445 3 1731 843 281 38 41 chr3 150250749 150251016 -9348767 - B4 SINE B4 0 292 27 3 1731 1474 161 142 30 chr3 150251290 150251467 -9348316 - RMER17C LTR ERVK -3 407 210 3 1731 315 0 0 0 chr3 150251467 150251502 -9348281 + (CAGA)n Simple_repeat Simple_repeat 2 36 0 3 1731 1474 161 142 30 chr3 150251502 150251690 -9348093 - RMER17C LTR ERVK -201 209 2 3 1731 226 279 109 47 chr3 150253114 150253242 -9346541 + MIRb SINE MIR 12 147 -121 3 1731 1296 59 6 0 chr3 150253260 150253430 -9346353 + L1_Mus1 LINE L1 6396 6566 -1 3 1731 363 293 81 24 chr3 150254526 150254774 -9345009 - L1MC LINE L1 -758 5388 5127 3 1731 23 54 0 0 chr3 150254821 150254858 -9344925 + AT_rich Low_complexity Low_complexity 1 37 0 3 1731 252 0 0 0 chr3 150258134 150258162 -9341621 + (TG)n Simple_repeat Simple_repeat 1 28 0 4 1731 630 136 0 0 chr3 150258167 150258285 -9341498 + (TA)n Simple_repeat Simple_repeat 1 118 0 4 1731 637 315 11 42 chr3 150258287 150258476 -9341307 - B3A SINE B2 -14 184 2 4 1731 13171 52 3 1 chr3 150258521 150260912 -9338871 - L1Md_F2 LINE L1 -2 6580 4187 4 1731 1370 251 209 21 chr3 150260970 150261686 -9338097 - Lx6 LINE L1 -6 7454 6605 4 1731 27 29 0 0 chr3 150262173 150262207 -9337576 + AT_rich Low_complexity Low_complexity 1 34 0 4 1731 317 155 0 12 chr3 150263188 150263241 -9336542 + CT-rich Low_complexity Low_complexity 32 84 0 4 1731 267 79 0 0 chr3 150263241 150263279 -9336504 + (CA)n Simple_repeat Simple_repeat 1 38 0 4 1731 317 155 0 12 chr3 150263279 150263310 -9336473 + polypyrimidine Low_complexity Low_complexity 2 31 0 4 1731 525 179 0 0 chr3 150263321 150263483 -9336300 + CT-rich Low_complexity Low_complexity 2 163 0 4 1731 243 0 0 0 chr3 150263483 150263510 -9336273 + (CA)n Simple_repeat Simple_repeat 1 27 0 4 1731 386 231 54 27 chr3 150264015 150264126 -9335657 + Lx8 LINE L1 7038 7151 -322 4 1731 22 0 0 0 chr3 150264184 150264206 -9335577 + AT_rich Low_complexity Low_complexity 1 22 0 4 1731 28 48 0 0 chr3 150264471 150264513 -9335270 + AT_rich Low_complexity Low_complexity 1 42 0 4 1731 323 209 54 18 chr3 150264946 150265058 -9334725 - Lx9 LINE L1 0 7644 7529 4 1731 2039 73 0 0 chr3 150268203 150268462 -9331321 - L1Md_F2 LINE L1 -331 6251 5993 4 1731 2316 83 0 6 chr3 150268462 150268778 -9331005 + L1Md_F2 LINE L1 6254 6567 -15 4 1731 1280 7 0 7 chr3 150268807 150268957 -9330826 + (GAA)n Simple_repeat Simple_repeat 2 150 0 4 1731 1419 188 52 10 chr3 150268957 150269247 -9330536 - ORR1B2 LTR MaLR -65 302 1 4 1731 366 23 0 0 chr3 150270793 150270836 -9328947 + (CA)n Simple_repeat Simple_repeat 2 44 0 4 1731 195 42 0 0 chr3 150273884 150273908 -9325875 + (CGAG)n Simple_repeat Simple_repeat 3 26 0 4 1731 192 77 0 0 chr3 150274223 150274249 -9325534 + (GAAAA)n Simple_repeat Simple_repeat 5 30 0 4 1731 24 67 0 0 chr3 150274353 150274398 -9325385 + AT_rich Low_complexity Low_complexity 1 45 0 4 1731 21 0 0 0 chr3 150275474 150275495 -9324288 + AT_rich Low_complexity Low_complexity 1 21 0 4 1731 474 33 0 0 chr3 150277100 150277160 -9322623 + (TC)n Simple_repeat Simple_repeat 1 60 0 4 1731 230 368 36 7 chr3 150277367 150277504 -9322279 - MER3 DNA MER1_type -2 207 67 4 1731 453 66 0 0 chr3 150278243 150278304 -9321479 + (TTTC)n Simple_repeat Simple_repeat 2 62 0 4 1731 292 248 100 77 chr3 150278502 150278672 -9321111 + RLTR41 LTR ERV1 1 174 -272 4 1731 402 159 0 0 chr3 150278726 150278795 -9320988 + RLTR41 LTR ERV1 168 236 -210 4 1731 580 170 0 28 chr3 150278793 150278902 -9320881 + RLTR41 LTR ERV1 339 444 -2 4 1731 482 339 111 6 chr3 150279030 150279211 -9320572 + B4A SINE B4 73 272 -20 4 1731 227 196 30 20 chr3 150279298 150279397 -9320386 + GA-rich Low_complexity Low_complexity 4 103 0 4 1731 242 115 19 0 chr3 150280454 150280506 -9319277 + (CAA)n Simple_repeat Simple_repeat 2 54 0 4 1731 551 30 0 0 chr3 150280555 150280621 -9319162 - L1_Mus3 LINE L1 -879 5757 5692 4 1731 5760 87 44 15 chr3 150280621 150281465 -9318318 + L1_Mus3 LINE L1 5769 6636 -2 4 1731 300 53 0 0 chr3 150281957 150281995 -9317788 + (CAAT)n Simple_repeat Simple_repeat 2 39 0 4 1731 457 308 115 38 chr3 150282105 150282497 -9317286 + MER63B DNA AcHobo 2 423 -13 4 1731 468 0 0 0 chr3 150282497 150282549 -9317234 + (TTTA)n Simple_repeat Simple_repeat 2 53 0 4 1731 1203 88 0 0 chr3 150282989 150283159 -9316624 + (TTCC)n Simple_repeat Simple_repeat 4 173 0 4 1731 737 83 18 0 chr3 150283161 150283270 -9316513 + (TTTC)n Simple_repeat Simple_repeat 1 111 0 4 1731 602 155 342 0 chr3 150283666 150283827 -9315956 - B3 SINE B2 0 216 1 4 1731 188 152 43 0 chr3 150283900 150283946 -9315837 + CT-rich Low_complexity Low_complexity 2 49 0 4 1731 3145 242 49 56 chr3 150283948 150284908 -9314875 - RMER1C Other Other -38 1304 289 4 1731 764 80 22 49 chr3 150284939 150285123 -9314660 + (CA)n Simple_repeat Simple_repeat 2 180 0 4 1731 272 70 23 0 chr3 150285135 150285178 -9314605 + (CA)n Simple_repeat Simple_repeat 1 44 0 4 1731 909 58 53 0 chr3 150285189 150285360 -9314423 + (CA)n Simple_repeat Simple_repeat 1 180 0 4 1731 846 74 22 28 chr3 150285390 150285570 -9314213 + (CA)n Simple_repeat Simple_repeat 2 180 0 4 1731 227 222 0 0 chr3 150285573 150285618 -9314165 + A-rich Low_complexity Low_complexity 1 45 0 4 1731 272 85 43 0 chr3 150286178 150286225 -9313558 + (CATATA)n Simple_repeat Simple_repeat 6 54 0 4 1731 784 244 66 139 chr3 150286342 150286737 -9313046 - RLTR23 LTR ERV1 -57 373 8 4 1731 821 10 10 0 chr3 150287129 150287227 -9312556 + (TAGA)n Simple_repeat Simple_repeat 4 102 0 4 1731 572 227 7 54 chr3 150287588 150287739 -9312044 + MT2A LTR ERVL 1 137 -447 4 1731 1198 257 92 17 chr3 150287794 150288290 -9311493 - RLTR20A LTR ERVK -8 552 1 4 1731 774 277 150 7 chr3 150288316 150288603 -9311180 - MTD LTR MaLR -42 377 50 4 1731 439 112 25 0 chr3 150291166 150291246 -9308537 + (TC)n Simple_repeat Simple_repeat 1 82 0 4 1731 1241 235 40 19 chr3 150291335 150291500 -9308283 - RMER17C LTR ERVK -29 381 216 4 1731 297 68 0 0 chr3 150291500 150291544 -9308239 + (CAGAGA)n Simple_repeat Simple_repeat 4 47 0 4 1731 1241 241 44 26 chr3 150291544 150291790 -9307993 - RMER17C LTR ERVK -408 401 1 4 1731 423 0 0 0 chr3 150292486 150292533 -9307250 + (T)n Simple_repeat Simple_repeat 1 47 0 4 1731 877 134 0 38 chr3 150293731 150293895 -9305888 + CT-rich Low_complexity Low_complexity 20 180 0 4 1731 1058 109 0 0 chr3 150293895 150294042 -9305741 - B1_Mus1 SINE Alu 0 148 2 4 1731 877 134 0 38 chr3 150294042 150294063 -9305720 + polypyrimidine Low_complexity Low_complexity 2 19 0 4 1731 316 292 9 0 chr3 150294064 150294170 -9305613 + CT-rich Low_complexity Low_complexity 2 108 0 4 1731 21 0 0 0 chr3 150294884 150294905 -9304878 + AT_rich Low_complexity Low_complexity 1 21 0 4 1731 32 75 0 0 chr3 150295011 150295078 -9304705 + AT_rich Low_complexity Low_complexity 1 67 0 4 1731 216 335 12 18 chr3 150295778 150295948 -9303835 + G-rich Low_complexity Low_complexity 5 173 0 4 1731 462 273 0 0 chr3 150296840 150296939 -9302844 - B3 SINE B2 -103 113 15 4 1731 1490 53 32 51 chr3 150298167 150298384 -9301399 + L1_Mus2 LINE L1 6353 6565 -1 4 1731 2758 68 0 34 chr3 150298435 150298855 -9300928 - L1Md_F2 LINE L1 0 6582 6196 4 1731 29 28 0 0 chr3 150300066 150300102 -9299681 + AT_rich Low_complexity Low_complexity 1 36 0 4 1731 31 26 0 0 chr3 150300830 150300868 -9298915 + AT_rich Low_complexity Low_complexity 1 38 0 4 1731 375 182 0 0 chr3 150300885 150300962 -9298821 + (CA)n Simple_repeat Simple_repeat 1 77 0 4 1731 382 331 15 52 chr3 150300963 150301097 -9298686 - RSINE1 SINE B4 -32 133 5 4 1731 7922 48 13 0 chr3 150301151 150302401 -9297382 - L1Md_F2 LINE L1 -2 6580 5315 4 1731 227 232 12 0 chr3 150302408 150302490 -9297293 + CT-rich Low_complexity Low_complexity 1 83 0 4 1731 573 36 36 0 chr3 150302525 150302609 -9297174 + (TG)n Simple_repeat Simple_repeat 2 88 0 4 1731 2141 194 37 31 chr3 150304431 150304889 -9294894 + RMER6B LTR ERVK 1 461 0 4 1731 408 249 52 10 chr3 150305973 150306136 -9293647 + Lx6 LINE L1 5703 5905 -1555 4 1731 258 32 0 0 chr3 150307352 150307383 -9292400 + (T)n Simple_repeat Simple_repeat 1 31 0 4 1731 234 0 0 0 chr3 150310023 150310049 -9289734 + (TA)n Simple_repeat Simple_repeat 2 27 0 4 1731 216 0 0 0 chr3 150310282 150310306 -9289477 + (TTTG)n Simple_repeat Simple_repeat 3 26 0 4 1731 269 362 39 3 chr3 150312085 150312236 -9287547 + B3A SINE B2 6 164 -29 4 1731 22 94 0 0 chr3 150312346 150312410 -9287373 + AT_rich Low_complexity Low_complexity 1 64 0 4 1731 524 297 120 6 chr3 150312832 150313015 -9286768 - B3 SINE B2 -7 209 6 4 1731 351 0 0 0 chr3 150313644 150313683 -9286100 + (TG)n Simple_repeat Simple_repeat 1 39 0 4 1731 289 337 100 24 chr3 150313765 150313975 -9285808 - B4 SINE B4 -65 227 2 4 1731 187 310 143 30 chr3 150314370 150314503 -9285280 - MIRb SINE MIR -101 167 20 4 1731 283 292 115 74 chr3 150316740 150316862 -9282921 - ID_B1 SINE B4 -8 216 90 4 1731 1998 175 204 63 chr3 150317038 150317305 -9282478 + RMER6C LTR ERVK 1 345 -345 4 1731 486 0 0 0 chr3 150317305 150317359 -9282424 + (GA)n Simple_repeat Simple_repeat 2 55 0 4 1731 1998 175 204 63 chr3 150317359 150317694 -9282089 + RMER6C LTR ERVK 346 688 -2 4 1731 23 0 0 0 chr3 150317793 150317816 -9281967 + AT_rich Low_complexity Low_complexity 1 23 0 4 1731 1062 103 0 0 chr3 150317818 150317964 -9281819 - B1_Mm SINE Alu -1 146 1 4 1731 1470 169 46 51 chr3 150318197 150318609 -9281174 - RMER17C LTR ERVK 0 410 1 4 1731 1174 61 0 0 chr3 150319111 150319258 -9280525 - B1_Mus2 SINE Alu 0 147 1 4 1731 302 156 16 0 chr3 150319352 150319416 -9280367 + (TA)n Simple_repeat Simple_repeat 1 65 0 4 1731 785 348 66 0 chr3 150319693 150319949 -9279834 + B4 SINE B4 6 278 -14 4 1731 699 209 0 3 chr3 150319974 150320321 -9279462 + (CA)n Simple_repeat Simple_repeat 1 345 0 4 1731 981 304 94 20 chr3 150320588 150320930 -9278853 - ORR1D2 LTR MaLR -2 368 2 4 1731 273 390 45 58 chr3 150321539 150321762 -9278021 + B4A SINE B4 2 221 -71 4 1731 285 29 0 0 chr3 150321833 150321867 -9277916 + (CA)n Simple_repeat Simple_repeat 1 34 0 4 1731 339 25 0 0 chr3 150321867 150321906 -9277877 + (GA)n Simple_repeat Simple_repeat 2 41 0 4 1731 2986 122 10 38 chr3 150323716 150324211 -9275572 - RMER2 LTR ERV1 0 567 87 4 1731 426 187 0 0 chr3 150324211 150324302 -9275481 + CT-rich Low_complexity Low_complexity 2 92 0 4 1731 269 89 22 0 chr3 150324311 150324356 -9275427 + (TTTA)n Simple_repeat Simple_repeat 4 49 0 4 1731 2122 239 8 27 chr3 150324438 150324927 -9274856 - Lx6 LINE L1 -14 7446 6967 4 1731 373 315 242 10 chr3 150324959 150325257 -9274526 + Lx8 LINE L1 6319 6685 -788 4 1731 294 250 15 0 chr3 150328390 150328458 -9271325 - ID2 SINE ID -14 69 1 4 1731 191 275 20 99 chr3 150328707 150328808 -9270975 + L3 LINE CR1 776 868 -3621 4 1731 189 74 0 0 chr3 150328927 150328954 -9270829 + (TCTG)n Simple_repeat Simple_repeat 2 28 0 5 1731 349 318 96 21 chr3 150329377 150329547 -9270236 + B3A SINE B2 28 215 -1 5 1731 324 228 6 46 chr3 150329630 150329805 -9269978 + (TATATG)n Simple_repeat Simple_repeat 6 173 0 5 1731 361 299 9 9 chr3 150329820 150329928 -9269855 + (TG)n Simple_repeat Simple_repeat 2 109 0 5 1731 328 120 0 0 chr3 150329997 150330047 -9269736 + MusHAL1 LINE L1 2298 2347 -365 5 1731 11187 162 14 7 chr3 150330057 150332119 -9267664 - L1_Mur1 LINE L1 -1647 4239 2164 5 1731 24 32 0 0 chr3 150332119 150332150 -9267633 + AT_rich Low_complexity Low_complexity 1 31 0 5 1731 307 106 30 0 chr3 150332605 150332671 -9267112 + (TTTTTG)n Simple_repeat Simple_repeat 5 72 0 5 1731 6030 93 12 11 chr3 150332681 150333709 -9266074 - MusHAL1 LINE L1 -1743 1610 583 5 1731 296 305 54 180 chr3 150334430 150334818 -9264965 - MTE2a LTR MaLR -39 340 2 5 1731 267 363 20 7 chr3 150335133 150335280 -9264503 - MTE-int LTR MaLR -1184 396 248 5 1731 321 301 17 17 chr3 150336048 150336163 -9263620 - Lx8 LINE L1 -377 7096 6982 5 1731 1159 244 9 0 chr3 150337933 150338162 -9261621 + MTD LTR MaLR 3 233 -186 5 1731 2091 209 27 7 chr3 150338165 150338570 -9261213 - MTC LTR MaLR -8 413 1 5 1731 653 277 39 44 chr3 150338570 150338770 -9261013 + MTD LTR MaLR 221 419 0 5 1732 479 355 45 0 chr3 150340977 150341132 -9258651 + RSINE1 SINE B4 3 164 -1 5 1732 22 0 0 0 chr3 150341178 150341200 -9258583 + AT_rich Low_complexity Low_complexity 1 22 0 5 1732 189 0 0 0 chr3 150341953 150341974 -9257809 + (CA)n Simple_repeat Simple_repeat 2 22 0 5 1732 249 119 0 0 chr3 150341974 150342015 -9257768 + (TA)n Simple_repeat Simple_repeat 2 43 0 5 1732 315 167 0 0 chr3 150343562 150343628 -9256155 + (TA)n Simple_repeat Simple_repeat 2 67 0 5 1732 7144 102 6 4 chr3 150344227 150345234 -9254549 + L1_Mus3 LINE L1 5629 6637 -1 5 1732 345 367 85 82 chr3 150345244 150345514 -9254269 + B4A SINE B4 2 272 -20 5 1732 390 74 0 0 chr3 150345527 150345581 -9254202 + (CA)n Simple_repeat Simple_repeat 2 55 0 5 1732 348 64 0 0 chr3 150346628 150346675 -9253108 + (CA)n Simple_repeat Simple_repeat 2 48 0 5 1732 301 273 25 115 chr3 150346675 150346743 -9253040 + L1MEg LINE L1 1843 1895 -4189 5 1732 1100 82 0 0 chr3 150346743 150346890 -9252893 + B1_Mm SINE Alu 1 147 0 5 1732 301 273 25 115 chr3 150346890 150346978 -9252805 + L1MEg LINE L1 1896 1985 -4099 5 1732 327 96 0 0 chr3 150347384 150347436 -9252347 + (CA)n Simple_repeat Simple_repeat 1 52 0 5 1732 224 257 17 35 chr3 150348470 150348592 -9251191 + CT-rich Low_complexity Low_complexity 1 119 0 5 1732 718 269 126 67 chr3 150349010 150349368 -9250415 + MTE2a LTR MaLR 1 379 0 5 1732 850 112 5 43 chr3 150349498 150349684 -9250099 + (TA)n Simple_repeat Simple_repeat 2 180 0 5 1732 23 0 0 0 chr3 150349877 150349900 -9249883 + AT_rich Low_complexity Low_complexity 1 23 0 5 1732 337 326 51 22 chr3 150349989 150350127 -9249656 + MLT1C LTR MaLR 1 142 -325 5 1732 991 85 0 7 chr3 150351814 150351956 -9247827 + B1_Mm SINE Alu 1 141 -6 5 1732 261 0 0 0 chr3 150351959 150351988 -9247795 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 5 1732 1614 170 45 69 chr3 150352095 150352430 -9247353 + ORR1A4 LTR MaLR 3 329 0 5 1732 209 127 17 52 chr3 150352835 150352893 -9246890 + A-rich Low_complexity Low_complexity 1 56 0 5 1732 203 323 155 50 chr3 150353449 150353726 -9246057 - L2c LINE L2 -39 3348 3043 5 1732 1892 176 25 14 chr3 150354086 150354448 -9245335 + ORR1B2 LTR MaLR 2 367 0 5 1732 591 27 0 0 chr3 150355816 150355889 -9243894 + (TG)n Simple_repeat Simple_repeat 1 73 0 5 1732 403 266 110 71 chr3 150355957 150356139 -9243644 + B4A SINE B4 104 292 0 5 1732 642 72 0 0 chr3 150356476 150356573 -9243210 + (CA)n Simple_repeat Simple_repeat 2 98 0 5 1732 1286 279 51 3 chr3 150356708 150357064 -9242719 + MTD LTR MaLR 6 378 -41 5 1732 234 0 0 0 chr3 150358075 150358101 -9241682 + (TTTG)n Simple_repeat Simple_repeat 4 29 0 5 1732 281 117 17 0 chr3 150358304 150358364 -9241419 + (TTTTTG)n Simple_repeat Simple_repeat 3 63 0 5 1732 279 0 0 0 chr3 150358787 150358818 -9240965 + (TG)n Simple_repeat Simple_repeat 2 32 0 5 1732 360 0 0 0 chr3 150360017 150360057 -9239726 + (TA)n Simple_repeat Simple_repeat 1 40 0 5 1732 381 22 0 0 chr3 150362079 150362125 -9237658 + (CA)n Simple_repeat Simple_repeat 1 46 0 5 1732 284 239 90 0 chr3 150363325 150363392 -9236391 + MER57-int LTR ERV1 7171 7243 -294 5 1732 302 207 11 54 chr3 150364815 150364907 -9234876 - L1_Rod LINE L1 -268 5579 5492 5 1732 243 0 0 0 chr3 150365060 150365087 -9234696 + (TTA)n Simple_repeat Simple_repeat 3 29 0 5 1732 774 277 45 0 chr3 150365180 150365356 -9234427 + B3A SINE B2 5 188 -10 5 1732 282 78 25 20 chr3 150365356 150365407 -9234376 - MTD LTR MaLR 0 421 368 5 1732 3139 202 93 8 chr3 150365413 150366077 -9233706 - MTB_Mm-int LTR MaLR -196 1062 342 5 1732 2701 143 59 8 chr3 150366077 150366555 -9233228 + RLTR11A2 LTR ERVK 1 502 -25 5 1732 1571 208 21 12 chr3 150366557 150366893 -9232890 - MTB_Mm-int LTR MaLR -917 341 3 5 1732 2081 176 25 15 chr3 150366893 150367296 -9232487 - MTB_Mm LTR MaLR 0 407 1 5 1732 30 0 0 0 chr3 150371455 150371485 -9228298 + AT_rich Low_complexity Low_complexity 1 30 0 5 1732 15902 139 8 38 chr3 150372296 150372626 -9227157 + L1_Mus3 LINE L1 3154 3482 -2401 5 1732 465 34 0 0 chr3 150372626 150372685 -9227098 + (CAAAA)n Simple_repeat Simple_repeat 2 60 0 5 1732 15902 139 8 38 chr3 150372685 150373400 -9226383 + L1_Mus3 LINE L1 3483 4203 -1680 5 1732 2731 52 3 9 chr3 150373400 150373748 -9226035 + ORR1A1 LTR MaLR 1 346 0 5 1732 15902 139 8 38 chr3 150373748 150373789 -9225994 + L1_Mus3 LINE L1 4204 4244 -1639 5 1732 3371 38 2 0 chr3 150373789 150374184 -9225599 - MTA_Mm LTR MaLR 0 396 1 5 1732 15902 139 8 38 chr3 150374184 150374444 -9225339 + L1_Mus3 LINE L1 4245 4449 -1434 5 1732 3638 56 30 0 chr3 150374444 150374909 -9224874 + L1_Mus1 LINE L1 6089 6567 0 5 1732 15902 130 40 22 chr3 150374909 150377020 -9222763 + L1_Mus3 LINE L1 4450 6604 -34 5 1732 1014 82 0 0 chr3 150377020 150377155 -9222628 + B1_Mus2 SINE Alu 12 146 -1 5 1732 507 62 26 43 chr3 150377155 150377272 -9222511 + (CAAAC)n Simple_repeat Simple_repeat 5 119 0 5 1732 3284 81 0 2 chr3 150377321 150377753 -9222030 + L1Md_F2 LINE L1 6132 6562 -20 5 1732 1135 96 11 11 chr3 150377756 150377936 -9221847 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 5 1732 625 390 58 52 chr3 150378247 150378799 -9220984 + MTE-int LTR MaLR 642 1198 -382 5 1732 3784 109 47 15 chr3 150378799 150379394 -9220389 + Lx LINE L1 6037 6650 -4 5 1732 625 390 58 52 chr3 150379394 150379576 -9220207 + MTE-int LTR MaLR 1199 1381 -199 5 1732 195 129 0 0 chr3 150379620 150379651 -9220132 + (TA)n Simple_repeat Simple_repeat 1 31 0 5 1732 234 0 0 0 chr3 150380000 150380026 -9219757 + (CA)n Simple_repeat Simple_repeat 1 26 0 5 1732 432 0 0 0 chr3 150380026 150380073 -9219710 + (GA)n Simple_repeat Simple_repeat 2 49 0 5 1732 708 278 82 129 chr3 150380081 150380434 -9219349 - MT2A LTR ERVL -135 466 1 5 1732 318 302 18 36 chr3 150380551 150380661 -9219122 + MIRb SINE MIR 95 202 -66 5 1732 24 0 0 0 chr3 150381318 150381342 -9218441 + AT_rich Low_complexity Low_complexity 1 24 0 5 1732 327 409 21 0 chr3 150381392 150381534 -9218249 + LTR33B LTR ERVL 23 167 -336 5 1732 1097 237 168 23 chr3 150382181 150382510 -9217273 - Lx9 LINE L1 -2 7642 7268 5 1732 321 26 0 0 chr3 150382510 150382548 -9217235 + (TTCA)n Simple_repeat Simple_repeat 2 39 0 5 1732 1097 237 168 23 chr3 150382548 150382658 -9217125 - Lx9 LINE L1 -377 7267 7139 5 1732 225 224 0 0 chr3 150383002 150383060 -9216723 + CT-rich Low_complexity Low_complexity 3 60 0 5 1732 632 275 0 0 chr3 150383087 150383218 -9216565 - B1_Mur2 SINE Alu -5 144 14 5 1732 22 0 0 0 chr3 150383393 150383415 -9216368 + AT_rich Low_complexity Low_complexity 1 22 0 5 1732 37988 31 2 1 chr3 150384114 150390266 -9209517 - L1Md_A LINE L1 -1 6581 420 5 1732 216 302 2 0 chr3 150390652 150390720 -9209063 - L2b LINE L2 0 3426 3319 5 1732 22 56 0 0 chr3 150390896 150390932 -9208851 + AT_rich Low_complexity Low_complexity 1 36 0 5 1732 252 0 0 0 chr3 150393254 150393282 -9206501 + (T)n Simple_repeat Simple_repeat 1 28 0 5 1732 608 224 176 117 chr3 150393737 150393959 -9205824 - Lx6 LINE L1 -593 6867 6695 5 1732 1514 298 27 35 chr3 150393961 150394482 -9205301 + Lx5 LINE L1 6534 7050 0 5 1732 312 27 0 0 chr3 150394482 150394519 -9205264 + (GA)n Simple_repeat Simple_repeat 1 37 0 5 1732 348 24 0 0 chr3 150394517 150394558 -9205225 + (GGAA)n Simple_repeat Simple_repeat 4 44 0 5 1732 344 59 0 19 chr3 150395665 150395717 -9204066 + (TATAA)n Simple_repeat Simple_repeat 3 53 0 5 1732 595 315 12 6 chr3 150395724 150395887 -9203896 + RSINE1 SINE B4 2 165 0 5 1732 485 299 22 28 chr3 150396753 150396935 -9202848 + RMER5 LTR ERV1 351 531 -3 5 1732 361 269 246 0 chr3 150396991 150397158 -9202625 + MTEa LTR MaLR 167 374 -5 5 1732 356 306 74 80 chr3 150397553 150397608 -9202175 + Lx9 LINE L1 7256 7310 -334 5 1732 285 51 0 0 chr3 150397608 150397647 -9202136 + (CA)n Simple_repeat Simple_repeat 2 40 0 5 1732 356 306 74 80 chr3 150397647 150397968 -9201815 + Lx9 LINE L1 7311 7630 -14 5 1732 4289 100 42 2 chr3 150397993 150398616 -9201167 - Lx3_Mus LINE L1 -221 6788 6141 5 1732 1229 113 24 0 chr3 150398616 150398829 -9200954 + Lx3_Mus LINE L1 6792 7009 0 5 1732 24 85 0 0 chr3 150399613 150399672 -9200111 + AT_rich Low_complexity Low_complexity 1 59 0 5 1732 3761 241 104 32 chr3 150400250 150401398 -9198385 - Lx6 LINE L1 -10 7450 6138 5 1732 315 49 0 0 chr3 150401398 150401439 -9198344 + (CA)n Simple_repeat Simple_repeat 1 41 0 5 1732 4054 206 35 32 chr3 150401439 150402600 -9197183 - Lx6 LINE L1 -1323 6137 4965 5 1732 813 346 52 9 chr3 150402601 150403067 -9196716 - L1_Mur3 LINE L1 -7170 542 57 5 1732 2713 208 50 79 chr3 150403119 150403912 -9195871 - Lx9 LINE L1 -138 7506 6737 5 1732 192 135 0 0 chr3 150403990 150404027 -9195756 + (A)n Simple_repeat Simple_repeat 1 37 0 5 1732 3601 120 16 2 chr3 150404038 150404588 -9195195 + Lx3A LINE L1 6408 6965 -16 5 1732 693 66 0 0 chr3 150404589 150404680 -9195103 + (GA)n Simple_repeat Simple_repeat 2 92 0 5 1732 24040 24 0 4 chr3 150404708 150407583 -9192200 + L1Md_T LINE L1 2722 5586 -297 6 1732 8472 30 1 0 chr3 150407583 150408578 -9191205 + L1Md_T LINE L1 5587 6582 0 6 1732 826 327 95 21 chr3 150410411 150410748 -9189035 + MTEb LTR MaLR 15 376 -3 6 1732 832 328 44 4 chr3 150410886 150411353 -9188430 + L1MD LINE L1 5238 5722 -520 6 1732 374 375 27 34 chr3 150411824 150411973 -9187810 - RSINE1 SINE B4 -15 150 3 6 1732 278 115 0 19 chr3 150411999 150412052 -9187731 + (TCCA)n Simple_repeat Simple_repeat 1 52 0 6 1732 2871 211 150 78 chr3 150412082 150412201 -9187582 - RLTR25B LTR ERVK 0 1028 899 6 1732 207 0 0 0 chr3 150412201 150412224 -9187559 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 6 1732 1044 98 0 0 chr3 150412230 150412403 -9187380 + (GAAA)n Simple_repeat Simple_repeat 2 174 0 6 1732 2871 211 150 78 chr3 150412403 150412827 -9186956 - RLTR25B LTR ERVK -135 893 398 6 1732 304 22 22 22 chr3 150412827 150412873 -9186910 + (TTTG)n Simple_repeat Simple_repeat 3 48 0 6 1732 2871 211 150 78 chr3 150412873 150413276 -9186507 - RLTR25B LTR ERVK -631 397 5 6 1732 247 45 0 64 chr3 150413437 150413484 -9186299 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 6 1732 241 372 116 36 chr3 150414426 150414702 -9185081 - MLT1J2 LTR MaLR -150 298 1 6 1732 2155 122 30 0 chr3 150415237 150415566 -9184217 - Lx2 LINE L1 0 6997 6659 6 1732 204 135 0 0 chr3 150417134 150417171 -9182612 + (GGA)n Simple_repeat Simple_repeat 2 38 0 6 1732 293 335 66 33 chr3 150418462 150418644 -9181139 - ERVL-B4-int LTR ERVL -646 5068 4881 6 1732 252 0 0 0 chr3 150419211 150419239 -9180544 + (GGATG)n Simple_repeat Simple_repeat 5 32 0 6 1732 405 0 0 0 chr3 150419242 150419287 -9180496 + (CA)n Simple_repeat Simple_repeat 2 46 0 6 1732 299 237 0 17 chr3 150419789 150419849 -9179934 + MLT1J1 LTR MaLR 1 59 -385 6 1732 226 19 53 70 chr3 150420308 150420365 -9179418 + (TTTTTG)n Simple_repeat Simple_repeat 6 61 0 6 1732 479 354 20 35 chr3 150420853 150420890 -9178893 - B3A SINE B2 0 198 163 6 1732 351 65 0 0 chr3 150420890 150420936 -9178847 + (TG)n Simple_repeat Simple_repeat 1 46 0 6 1732 479 354 20 35 chr3 150420936 150421097 -9178686 - B3A SINE B2 -36 162 4 6 1732 447 189 107 0 chr3 150422003 150422125 -9177658 - Lx9 LINE L1 -8 7636 7502 6 1732 663 312 33 24 chr3 150422279 150422489 -9177294 + B4 SINE B4 80 291 -1 6 1732 333 0 0 0 chr3 150425043 150425080 -9174703 + (TC)n Simple_repeat Simple_repeat 2 38 0 6 1732 441 0 0 0 chr3 150425080 150425128 -9174655 + (TA)n Simple_repeat Simple_repeat 2 50 0 6 1732 488 275 47 7 chr3 150425373 150425523 -9174260 - MER2 DNA MER2_type -41 304 149 6 1732 1115 50 21 21 chr3 150425626 150425869 -9173914 + (TCTA)n Simple_repeat Simple_repeat 1 243 0 6 1732 405 275 11 0 chr3 150426372 150426463 -9173320 - ORR1D1 LTR MaLR -205 169 78 6 1732 344 321 36 0 chr3 150426462 150426574 -9173209 - ORR1D1-int LTR MaLR -1171 199 84 6 1732 192 107 38 51 chr3 150426589 150426668 -9173115 + A-rich Low_complexity Low_complexity 2 79 0 6 1732 507 260 231 6 chr3 150426718 150426900 -9172883 - ORR1D1 LTR MaLR -3 371 149 6 1732 666 162 0 0 chr3 150426941 150427120 -9172663 + (CA)n Simple_repeat Simple_repeat 2 180 0 6 1732 894 238 5 16 chr3 150427206 150427398 -9172385 - ORR1D1 LTR MaLR -184 190 1 6 1732 322 278 82 19 chr3 150427486 150427644 -9172139 - L1M5 LINE L1 -481 5683 5516 6 1732 1100 97 0 0 chr3 150429343 150429488 -9170295 + B1_Mm SINE Alu 1 145 -2 6 1732 308 24 24 0 chr3 150429488 150429529 -9170254 + (TAAAA)n Simple_repeat Simple_repeat 2 43 0 6 1732 585 312 72 16 chr3 150429586 150429837 -9169946 - MLT2B4 LTR ERVL -288 268 4 6 1732 3485 72 34 4 chr3 150430192 150430683 -9169100 - L1Md_F2 LINE L1 0 6582 6098 6 1732 24 32 0 0 chr3 150430953 150430984 -9168799 + AT_rich Low_complexity Low_complexity 1 31 0 6 1732 694 274 143 13 chr3 150433846 150434146 -9165637 - Lx8 LINE L1 -155 7318 6980 6 1732 266 117 33 16 chr3 150434598 150434659 -9165124 - Lx LINE L1 -2 6652 6591 6 1732 624 319 6 58 chr3 150436181 150436494 -9163289 + Lx9 LINE L1 7144 7440 -204 6 1732 508 121 0 21 chr3 150436536 150436629 -9163154 + (CA)n Simple_repeat Simple_repeat 2 92 0 6 1732 291 85 0 0 chr3 150436633 150436680 -9163103 + (TC)n Simple_repeat Simple_repeat 2 48 0 6 1732 250 299 131 67 chr3 150436851 150437149 -9162634 + ORR1E LTR MaLR 19 335 -24 6 1732 1928 191 32 3 chr3 150438549 150438926 -9160857 - ORR1B1 LTR MaLR -4 390 3 6 1732 256 98 32 16 chr3 150439586 150439648 -9160135 + (TTTG)n Simple_repeat Simple_repeat 2 64 0 6 1732 22 0 0 0 chr3 150439974 150439996 -9159787 + AT_rich Low_complexity Low_complexity 1 22 0 6 1732 3139 69 2 17 chr3 150441423 150441836 -9157947 - L1Md_F2 LINE L1 -146 6436 6030 6 1732 1073 74 0 30 chr3 150441836 150442003 -9157780 + L1Md_F2 LINE L1 6420 6581 -1 6 1732 180 111 36 18 chr3 150442579 150442634 -9157149 + (TTG)n Simple_repeat Simple_repeat 2 57 0 6 1732 330 203 27 0 chr3 150443370 150443444 -9156339 + Lx9 LINE L1 7401 7476 -168 6 1732 240 111 0 0 chr3 150443445 150443481 -9156302 + (TATG)n Simple_repeat Simple_repeat 3 38 0 6 1732 424 175 50 8 chr3 150443481 150443602 -9156181 + Lx9 LINE L1 7518 7643 -1 6 1732 693 56 0 0 chr3 150444651 150444741 -9155042 + (TTTC)n Simple_repeat Simple_repeat 2 91 0 6 1732 908 116 0 0 chr3 150444749 150444878 -9154905 - B1_Mus2 SINE Alu 0 147 19 6 1732 21 57 0 0 chr3 150445545 150445580 -9154203 + AT_rich Low_complexity Low_complexity 1 35 0 6 1732 308 353 35 23 chr3 150445810 150445981 -9153802 + CR1_Mam LINE CR1 1580 1752 -452 6 1732 377 330 89 48 chr3 150447968 150448553 -9151230 + L1MC3 LINE L1 7177 7785 0 6 1732 181 279 0 0 chr3 150449599 150449642 -9150141 - MIRc SINE MIR -112 156 114 6 1732 820 305 93 19 chr3 150450763 150451224 -9148559 + RMER5 LTR ERV1 33 527 -7 6 1732 823 164 123 0 chr3 150451716 150451887 -9147896 + Lx3_Mus LINE L1 6794 6985 -24 6 1732 324 0 0 0 chr3 150451888 150451924 -9147859 + (TAAA)n Simple_repeat Simple_repeat 1 36 0 6 1732 183 397 114 13 chr3 150452852 150453079 -9146704 + L2 LINE L2 2663 2912 -507 6 1732 652 327 106 32 chr3 150454203 150454544 -9145239 + MTEa LTR MaLR 1 366 -13 6 1732 1301 244 26 47 chr3 150454548 150454930 -9144853 + ORR1D1 LTR MaLR 1 374 0 6 1732 268 243 55 18 chr3 150456632 150456741 -9143042 + L1MA9 LINE L1 5098 5210 -933 6 1732 274 313 49 12 chr3 150456750 150456869 -9142914 + PB1D9 SINE Alu 19 140 -9 6 1732 210 143 0 0 chr3 150456878 150456913 -9142870 + (TGAA)n Simple_repeat Simple_repeat 3 37 0 6 1732 7047 33 0 5 chr3 150456970 150457796 -9141987 + RLTR13B2 LTR ERVK 1 822 0 6 1732 27 62 0 0 chr3 150457878 150457926 -9141857 + AT_rich Low_complexity Low_complexity 1 48 0 6 1732 327 271 46 8 chr3 150458866 150458996 -9140787 + L1MA9 LINE L1 5845 5979 -333 6 1732 2759 29 20 3 chr3 150459053 150459398 -9140385 + L1Md_F3 LINE L1 6233 6583 -1 6 1732 351 241 79 84 chr3 150459402 150459592 -9140191 + L1MA9 LINE L1 6114 6302 -10 6 1732 23 0 0 0 chr3 150459905 150459928 -9139855 + AT_rich Low_complexity Low_complexity 1 23 0 6 1732 645 238 0 0 chr3 150459933 150460059 -9139724 + B1_Mus2 SINE Alu 1 126 -21 6 1732 471 141 0 0 chr3 150460067 150460145 -9139638 + (CA)n Simple_repeat Simple_repeat 2 79 0 6 1732 459 0 0 0 chr3 150460145 150460196 -9139587 + (GA)n Simple_repeat Simple_repeat 2 52 0 6 1732 409 230 33 58 chr3 150460196 150460316 -9139467 - B1_Mur1 SINE Alu -32 117 1 6 1732 21 36 0 0 chr3 150460537 150460565 -9139218 + AT_rich Low_complexity Low_complexity 1 28 0 6 1732 26 50 0 0 chr3 150461339 150461379 -9138404 + AT_rich Low_complexity Low_complexity 1 40 0 6 1732 226 301 10 106 chr3 150461381 150461485 -9138298 - PB1D10 SINE Alu -7 110 17 6 1732 195 129 0 0 chr3 150462268 150462299 -9137484 + (A)n Simple_repeat Simple_repeat 1 31 0 6 1732 227 208 13 65 chr3 150463830 150463907 -9135876 + (TATATG)n Simple_repeat Simple_repeat 6 78 0 6 1732 6006 101 10 9 chr3 150464018 150464898 -9134885 - Lx3_Mus LINE L1 -147 6862 5982 6 1732 3456 112 12 0 chr3 150464899 150465399 -9134384 - L1_Mur1 LINE L1 -150 5736 5231 6 1732 1026 141 10 50 chr3 150465411 150465612 -9134171 + Lx3_Mus LINE L1 6064 6256 -753 6 1732 601 144 0 0 chr3 150465610 150465707 -9134076 - L1_Mur1 LINE L1 -657 5229 5133 6 1732 25 0 0 0 chr3 150466210 150466235 -9133548 + AT_rich Low_complexity Low_complexity 1 25 0 6 1732 651 58 39 0 chr3 150466405 150466509 -9133274 + (TAGA)n Simple_repeat Simple_repeat 4 111 0 6 1732 239 234 0 0 chr3 150466716 150466763 -9133020 + (CATG)n Simple_repeat Simple_repeat 1 47 0 6 1732 308 239 15 0 chr3 150466835 150466902 -9132881 + RLTR18B LTR ERVK 20 87 -425 6 1732 274 116 0 0 chr3 150466902 150466945 -9132838 - L1_Mur1 LINE L1 -1981 3896 3854 6 1732 8696 234 55 42 chr3 150466959 150470092 -9129691 + Lx5 LINE L1 3898 7460 0 6 1732 611 302 97 5 chr3 150470139 150470335 -9129448 + B3 SINE B2 3 216 0 6 1733 315 194 13 40 chr3 150470796 150470871 -9128912 + B3 SINE B2 138 210 -6 6 1733 21 36 0 0 chr3 150471458 150471486 -9128297 + AT_rich Low_complexity Low_complexity 1 28 0 6 1733 32 26 0 0 chr3 150472234 150472273 -9127510 + AT_rich Low_complexity Low_complexity 1 39 0 6 1733 1356 275 11 121 chr3 150472652 150473124 -9126659 + MTC LTR MaLR 2 421 0 6 1733 22 0 0 0 chr3 150473966 150473988 -9125795 + AT_rich Low_complexity Low_complexity 1 22 0 6 1733 185 94 0 30 chr3 150474032 150474065 -9125718 + (TTG)n Simple_repeat Simple_repeat 2 33 0 6 1733 206 154 26 0 chr3 150475491 150475530 -9124253 + A-rich Low_complexity Low_complexity 1 40 0 6 1733 234 0 0 0 chr3 150476248 150476274 -9123509 + (TTATA)n Simple_repeat Simple_repeat 2 27 0 6 1733 228 86 0 0 chr3 150476906 150476941 -9122842 + (TG)n Simple_repeat Simple_repeat 1 35 0 6 1733 245 248 174 0 chr3 150477765 150477886 -9121897 - Tigger7 DNA MER2_type -90 2401 2260 6 1733 337 391 54 39 chr3 150478003 150478261 -9121522 - Tigger7 DNA MER2_type -2226 265 4 6 1733 23 0 0 0 chr3 150478322 150478345 -9121438 + AT_rich Low_complexity Low_complexity 1 23 0 6 1733 656 298 38 5 chr3 150478348 150478557 -9121226 - ID_B1 SINE B4 -6 218 3 6 1733 246 295 0 11 chr3 150484368 150484457 -9115326 + L1MD LINE L1 2510 2597 -3549 6 1733 237 227 19 130 chr3 150484951 150485113 -9114670 + L1MD LINE L1 3177 3320 -2826 6 1733 231 255 21 5 chr3 150485322 150485427 -9114356 + Lx9 LINE L1 5786 5912 -400 6 1733 373 309 62 36 chr3 150485638 150485863 -9113920 + L1MD LINE L1 3356 3586 -2560 6 1733 425 232 0 10 chr3 150486578 150486674 -9113109 + B1_Mur4 SINE Alu 56 150 0 6 1733 373 295 236 32 chr3 150487028 150487375 -9112408 - L4 LINE RTE -216 1813 1396 7 1733 4776 172 30 36 chr3 150488493 150489029 -9110754 + L1_Mm LINE L1 4908 5455 -428 7 1733 261 57 0 0 chr3 150489029 150489064 -9110719 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 7 1733 4776 172 30 36 chr3 150489064 150489481 -9110302 + L1_Mm LINE L1 5456 5856 -27 7 1733 569 206 58 7 chr3 150489498 150489635 -9110148 - RMER6B LTR ERVK -251 210 67 7 1733 693 161 65 0 chr3 150489637 150489761 -9110022 - RMER6B LTR ERVK -329 132 1 7 1733 1344 238 58 0 chr3 150489768 150490112 -9109671 + Lx9 LINE L1 6643 7006 -638 7 1733 3556 170 8 9 chr3 150490358 150491001 -9108782 - Lx2B LINE L1 -3 6997 6356 7 1733 3045 142 77 38 chr3 150491003 150491588 -9108195 + Lx2B LINE L1 5594 6201 -799 7 1733 359 290 7 42 chr3 150493527 150493671 -9106112 + CT-rich Low_complexity Low_complexity 5 143 0 7 1733 540 316 19 13 chr3 150493820 150493974 -9105809 - B3A SINE B2 -16 182 28 7 1733 318 300 174 31 chr3 150493977 150494235 -9105548 - MLT1C-int LTR MaLR -811 560 266 7 1733 235 104 42 0 chr3 150494609 150494657 -9105126 + (TC)n Simple_repeat Simple_repeat 1 50 0 7 1733 247 339 95 18 chr3 150494681 150494849 -9104934 - MLT1C LTR MaLR -282 185 5 7 1733 546 360 54 59 chr3 150495166 150495520 -9104263 + L3 LINE CR1 4117 4468 -21 7 1733 2115 310 124 37 chr3 150495855 150497028 -9102755 - Lx8 LINE L1 -13 7460 6185 7 1733 287 279 51 26 chr3 150497400 150497528 -9102255 - MLT1A1 LTR MaLR -4 404 229 7 1733 225 0 0 0 chr3 150497748 150497773 -9102010 + (T)n Simple_repeat Simple_repeat 1 25 0 7 1733 24 0 0 0 chr3 150499200 150499224 -9100559 + AT_rich Low_complexity Low_complexity 1 24 0 7 1733 201 150 0 48 chr3 150500206 150500248 -9099535 + (TTTA)n Simple_repeat Simple_repeat 4 43 0 1 1733 385 337 70 49 chr3 150500271 150500555 -9099228 - B4A SINE B4 -2 290 1 2 1733 225 181 167 0 chr3 150501981 150502053 -9097730 + L1M3de LINE L1 1667 1750 -4903 3 1733 252 310 30 37 chr3 150502045 150502209 -9097574 + L1M3 LINE L1 4004 4166 -1974 4 1733 446 103 13 0 chr3 150502243 150502321 -9097462 + (CA)n Simple_repeat Simple_repeat 2 80 0 5 1733 504 48 0 0 chr3 150503507 150503570 -9096213 + (CA)n Simple_repeat Simple_repeat 1 63 0 6 1733 2530 48 3 3 chr3 150504570 150504885 -9094898 - L1_Mus1 LINE L1 0 6567 6253 7 1733 2164 67 0 0 chr3 150504885 150505154 -9094629 + L1_Mus1 LINE L1 5966 6234 -333 7 1733 778 368 85 30 chr3 150505375 150505978 -9093805 + MER82 DNA MER2_type 11 646 -7 8 1733 287 252 33 16 chr3 150506640 150506761 -9093022 + (CAGAGA)n Simple_repeat Simple_repeat 5 127 0 9 1733 279 169 0 0 chr3 150506779 150506850 -9092933 + GA-rich Low_complexity Low_complexity 1 71 0 1 1733 891 102 31 0 chr3 150507218 150507346 -9092437 - B1_Mm SINE Alu -12 135 4 1 1733 585 260 110 123 chr3 150507663 150507751 -9092032 + RLTR12B LTR ERVK 48 145 -383 1 1733 279 0 0 0 chr3 150507751 150507782 -9092001 + (TA)n Simple_repeat Simple_repeat 1 31 0 1 1733 585 260 110 123 chr3 150507782 150508149 -9091634 + RLTR12B LTR ERVK 146 496 -32 1 1733 252 0 0 0 chr3 150508358 150508386 -9091397 + (T)n Simple_repeat Simple_repeat 1 28 0 1 1733 200 35 35 0 chr3 150508413 150508442 -9091341 + (TTTG)n Simple_repeat Simple_repeat 3 32 0 1 1733 4845 126 0 25 chr3 150508940 150509707 -9090076 - Lx2A1 LINE L1 -3 7005 6258 1 1733 21 36 0 0 chr3 150510426 150510454 -9089329 + AT_rich Low_complexity Low_complexity 1 28 0 1 1733 21 0 0 0 chr3 150510516 150510537 -9089246 + AT_rich Low_complexity Low_complexity 1 21 0 1 1733 504 72 0 0 chr3 150511550 150511619 -9088164 + (TG)n Simple_repeat Simple_repeat 1 69 0 1 1733 233 111 0 43 chr3 150512829 150512876 -9086907 + GA-rich Low_complexity Low_complexity 2 46 0 2 1733 497 258 7 22 chr3 150513270 150513289 -9086494 + ID_B1 SINE B4 63 195 -29 2 1733 838 95 0 0 chr3 150513289 150513405 -9086378 + B1_Mus1 SINE Alu 1 116 -32 2 1733 428 309 87 31 chr3 150513717 150514038 -9085745 + L1MD3 LINE L1 7657 7995 0 2 1733 21 36 0 0 chr3 150516317 150516345 -9083438 + AT_rich Low_complexity Low_complexity 1 28 0 2 1733 2348 128 147 9 chr3 150516345 150517085 -9082698 - Lx3A LINE L1 -5 6976 6135 2 1733 12352 111 43 5 chr3 150517088 150517836 -9081947 + L1_Mur1 LINE L1 2021 2795 -3091 2 1733 294 50 0 0 chr3 150517836 150517876 -9081907 + (CAAAA)n Simple_repeat Simple_repeat 2 41 0 2 1733 12352 111 43 5 chr3 150517876 150519124 -9080659 + L1_Mur1 LINE L1 2796 4091 -1795 2 1733 29 47 0 0 chr3 150519405 150519448 -9080335 + AT_rich Low_complexity Low_complexity 1 43 0 2 1733 291 71 0 0 chr3 150519617 150519659 -9080124 + (TG)n Simple_repeat Simple_repeat 1 42 0 2 1733 585 0 0 0 chr3 150519659 150519723 -9080060 + (GA)n Simple_repeat Simple_repeat 1 65 0 3 1733 296 48 24 0 chr3 150520145 150520187 -9079596 + (TC)n Simple_repeat Simple_repeat 2 44 0 3 1733 207 322 25 0 chr3 150520207 150520328 -9079455 + (TA)n Simple_repeat Simple_repeat 2 125 0 3 1733 247 256 12 24 chr3 150520239 150520323 -9079460 + (CATATA)n Simple_repeat Simple_repeat 6 88 0 3 1733 29 28 0 0 chr3 150520933 150520969 -9078814 + AT_rich Low_complexity Low_complexity 1 36 0 3 1733 399 296 16 0 chr3 150521240 150521365 -9078418 + Lx7 LINE L1 6664 6790 -906 3 1733 417 206 40 33 chr3 150521376 150521527 -9078256 + Lx9 LINE L1 7485 7636 -8 3 1733 1398 283 37 13 chr3 150521535 150521997 -9077786 + Lx7 LINE L1 6770 7242 -454 3 1733 27 81 0 0 chr3 150522295 150522357 -9077426 + AT_rich Low_complexity Low_complexity 1 62 0 3 1733 21 0 0 0 chr3 150522432 150522453 -9077330 + AT_rich Low_complexity Low_complexity 1 21 0 3 1733 278 305 48 28 chr3 150522575 150522720 -9077063 - Tigger5 DNA MER2_type -108 2298 2151 3 1733 23 33 0 0 chr3 150523702 150523732 -9076051 + AT_rich Low_complexity Low_complexity 1 30 0 4 1733 1172 49 0 0 chr3 150524178 150524322 -9075461 - B1_Mus2 SINE Alu -2 145 2 4 1733 859 205 125 0 chr3 150525064 150525264 -9074519 + URR1A DNA MER1_type 2 226 0 4 1733 3995 48 2 1 chr3 150525543 150526044 -9073739 - L1Md_A LINE L1 -542 6458 5613 4 1733 4147 33 0 0 chr3 150526044 150526532 -9073251 + L1Md_T LINE L1 6094 6581 -1 4 1733 26 30 0 0 chr3 150527378 150527411 -9072372 + AT_rich Low_complexity Low_complexity 1 33 0 4 1733 245 182 18 0 chr3 150528268 150528323 -9071460 + GA-rich Low_complexity Low_complexity 2 57 0 4 1733 485 32 16 0 chr3 150528959 150529022 -9070761 + (CATA)n Simple_repeat Simple_repeat 3 66 0 4 1733 423 0 0 0 chr3 150529779 150529826 -9069957 + (TG)n Simple_repeat Simple_repeat 1 47 0 4 1733 446 379 6 12 chr3 150529828 150529991 -9069792 - B3A SINE B2 -32 166 5 4 1733 1885 174 77 57 chr3 150531348 150531824 -9067959 - RLTR31A_Mm LTR ERVK 0 561 1 5 1733 21 0 0 0 chr3 150533015 150533036 -9066747 + AT_rich Low_complexity Low_complexity 1 21 0 5 1733 340 327 104 26 chr3 150533733 150533887 -9065896 + B3A SINE B2 3 168 -30 5 1733 366 196 0 0 chr3 150533887 150533984 -9065799 + GA-rich Low_complexity Low_complexity 1 97 0 5 1733 213 39 0 0 chr3 150536291 150536317 -9063466 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 5 1733 1240 157 0 26 chr3 150537026 150537255 -9062528 - Lx2 LINE L1 0 6997 6775 5 1733 3021 145 2 8 chr3 150537255 150537749 -9062034 - Lx2 LINE L1 -363 6634 6144 5 1733 1115 136 54 0 chr3 150537938 150538122 -9061661 - B2_Mm2 SINE B2 0 195 2 5 1733 4801 126 27 97 chr3 150538343 150539318 -9060465 - RMER17A2 LTR ERVK 0 906 1 5 1733 427 198 73 92 chr3 150539333 150539539 -9060244 + Lx9 LINE L1 7315 7516 -128 5 1733 21 71 0 0 chr3 150539554 150539596 -9060187 + AT_rich Low_complexity Low_complexity 1 42 0 5 1733 205 240 62 0 chr3 150539646 150539775 -9060008 + (TA)n Simple_repeat Simple_repeat 2 138 0 6 1733 269 176 0 13 chr3 150539787 150539862 -9059921 + (TA)n Simple_repeat Simple_repeat 2 75 0 6 1733 529 317 66 0 chr3 150540640 150540807 -9058976 + B3 SINE B2 10 187 -29 6 1733 405 58 0 0 chr3 150540808 150540860 -9058923 + (CA)n Simple_repeat Simple_repeat 1 52 0 6 1733 287 292 62 0 chr3 150541036 150541132 -9058651 + LTR37B LTR ERV1 196 297 -171 6 1733 958 101 0 28 chr3 150542306 150542449 -9057334 + B1_Mus1 SINE Alu 2 140 -8 6 1733 486 0 0 0 chr3 150542583 150542637 -9057146 + (TG)n Simple_repeat Simple_repeat 2 55 0 6 1733 24 53 0 0 chr3 150543386 150543424 -9056359 + AT_rich Low_complexity Low_complexity 1 38 0 6 1733 221 360 0 0 chr3 150543455 150543541 -9056242 + (TG)n Simple_repeat Simple_repeat 1 86 0 6 1733 402 115 0 0 chr3 150543582 150543643 -9056140 + (TATG)n Simple_repeat Simple_repeat 4 64 0 6 1733 715 341 34 41 chr3 150543643 150543909 -9055874 - B4 SINE B4 -21 271 8 6 1733 38 0 0 0 chr3 150544573 150544611 -9055172 + AT_rich Low_complexity Low_complexity 1 38 0 7 1733 1522 224 27 41 chr3 150544958 150545326 -9054457 + ORR1D1 LTR MaLR 12 374 0 7 1733 238 291 38 0 chr3 150546011 150546090 -9053693 - Cheshire DNA MER1_type -2170 250 169 7 1733 1273 49 6 0 chr3 150546195 150546358 -9053425 + L1Md_T LINE L1 6417 6580 -2 7 1733 2933 36 8 3 chr3 150546353 150546716 -9053067 + L1Md_F3 LINE L1 6217 6581 -3 7 1733 926 290 68 45 chr3 150546916 150547270 -9052513 - MTEb LTR MaLR -16 363 2 7 1733 377 321 11 16 chr3 150547448 150547635 -9052148 + L1MA4 LINE L1 5744 5929 -371 7 1733 714 72 0 0 chr3 150547832 150547929 -9051854 + (TG)n Simple_repeat Simple_repeat 2 98 0 7 1733 360 0 0 0 chr3 150548707 150548747 -9051036 + (GA)n Simple_repeat Simple_repeat 1 40 0 7 1733 27 49 0 0 chr3 150549517 150549558 -9050225 + AT_rich Low_complexity Low_complexity 1 41 0 7 1733 1164 281 55 60 chr3 150549725 150550305 -9049478 - Lx9 LINE L1 -1 7643 7067 8 1733 25 0 0 0 chr3 150550317 150550342 -9049441 + AT_rich Low_complexity Low_complexity 1 25 0 8 1733 22 70 0 0 chr3 150550460 150550503 -9049280 + AT_rich Low_complexity Low_complexity 1 43 0 8 1733 347 302 24 65 chr3 150550956 150551080 -9048703 - PB1D7 SINE Alu -1 119 1 8 1733 480 306 36 7 chr3 150551080 150551152 -9048631 - ID SINE ID -143 81 6 8 1733 23 33 0 0 chr3 150551366 150551396 -9048387 + AT_rich Low_complexity Low_complexity 1 30 0 8 1733 504 310 27 20 chr3 150551675 150551823 -9047960 + B3A SINE B2 6 154 -44 8 1733 345 24 0 0 chr3 150551848 150551890 -9047893 + (CA)n Simple_repeat Simple_repeat 2 43 0 8 1733 217 312 0 0 chr3 150552038 150552115 -9047668 + GA-rich Low_complexity Low_complexity 4 80 0 8 1733 7242 2 0 0 chr3 150552217 150553019 -9046764 - L1Md_A LINE L1 0 6582 5781 8 1733 431 349 156 20 chr3 150553782 150554212 -9045571 + MLT1C LTR MaLR 1 505 0 9 1733 205 137 19 56 chr3 150555731 150555785 -9043998 + T-rich Low_complexity Low_complexity 1 52 0 9 1733 6532 152 53 22 chr3 150555785 150556979 -9042804 - Lx2B LINE L1 -2 6998 5768 9 1733 3717 167 42 14 chr3 150556993 150557759 -9042024 - L1_Mur1 LINE L1 -3764 2122 1336 9 1733 2554 171 14 6 chr3 150557739 150558245 -9041538 - L1VL4 LINE L1 -5349 953 444 9 1733 337 391 70 63 chr3 150558403 150558570 -9041213 - B4A SINE B4 -4 288 123 9 1733 342 0 0 0 chr3 150558570 150558608 -9041175 + (CA)n Simple_repeat Simple_repeat 2 39 0 9 1733 337 391 70 63 chr3 150558608 150558724 -9041059 - B4A SINE B4 -170 122 3 9 1733 38 39 0 0 chr3 150560044 150560096 -9039687 + AT_rich Low_complexity Low_complexity 1 52 0 9 1733 245 285 212 15 chr3 150560315 150560447 -9039336 - Lx7 LINE L1 -370 7326 7169 9 1733 1610 185 16 23 chr3 150560548 150560852 -9038931 - ORR1C1 LTR MaLR -27 351 50 9 1733 334 250 129 71 chr3 150561062 150561286 -9038497 - RMER20B LTR ERVK -207 420 184 1 1733 252 370 24 39 chr3 150561387 150561724 -9038059 - L1M3 LINE L1 -291 5877 5546 1 1733 266 331 101 35 chr3 150562638 150562807 -9036976 + ORR1D1 LTR MaLR 1 180 -194 1 1733 24 0 0 0 chr3 150563948 150563972 -9035811 + AT_rich Low_complexity Low_complexity 1 24 0 1 1733 427 360 103 31 chr3 150564621 150564882 -9034901 + B4 SINE B4 2 281 -11 1 1733 395 99 38 38 chr3 150564961 150565066 -9034717 + (TCTCTG)n Simple_repeat Simple_repeat 2 106 0 1 1733 459 0 0 0 chr3 150565070 150565121 -9034662 + (CA)n Simple_repeat Simple_repeat 1 51 0 1 1733 935 156 0 22 chr3 150565188 150565372 -9034411 + T-rich Low_complexity Low_complexity 1 180 0 1 1733 384 332 47 26 chr3 150565428 150565638 -9034145 - B3A SINE B2 -11 205 2 1 1733 2670 74 0 17 chr3 150565773 150566131 -9033652 - L1_Mus1 LINE L1 0 6567 6216 1 1733 2687 190 82 42 chr3 150566605 150567199 -9032584 - RMER20B LTR ERVK 0 627 10 1 1733 2013 214 109 12 chr3 150569898 150570385 -9029398 - RMER5 LTR ERV1 0 534 1 1 1733 429 57 0 0 chr3 150570504 150570557 -9029226 + L1Md_F2 LINE L1 4390 4442 -1441 1 1733 9331 46 2 1 chr3 150570713 150571872 -9027911 + L1Md_F2 LINE L1 4427 5586 -297 1 1733 7807 51 9 7 chr3 150571872 150572866 -9026917 + L1Md_F2 LINE L1 5587 6582 0 1 1733 339 316 43 14 chr3 150572881 150573019 -9026764 - L1MEg LINE L1 -4109 1975 1834 1 1733 256 214 23 23 chr3 150574965 150575051 -9024732 + (CAGA)n Simple_repeat Simple_repeat 2 87 0 1 1733 191 61 0 29 chr3 150575867 150575901 -9023882 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 1 1733 248 28 0 0 chr3 150576098 150576134 -9023649 + B1_Mur4 SINE Alu 115 150 0 1 1733 313 68 68 0 chr3 150576144 150576203 -9023580 + (CAAAA)n Simple_repeat Simple_repeat 3 65 0 1 1733 285 317 39 0 chr3 150576274 150576378 -9023405 + PB1D10 SINE Alu 1 108 -9 1 1733 271 319 18 9 chr3 150576817 150576931 -9022852 + L1M2 LINE L1 2321 2435 -4414 1 1733 492 290 60 47 chr3 150577124 150577356 -9022427 - Lx9 LINE L1 -500 7144 6910 1 1733 284 284 125 0 chr3 150577365 150577453 -9022330 + Lx9 LINE L1 7277 7375 -269 1 1733 384 125 0 0 chr3 150577540 150577604 -9022179 + (TA)n Simple_repeat Simple_repeat 1 64 0 1 1733 459 330 8 0 chr3 150577964 150578082 -9021701 + B3A SINE B2 7 125 -73 1 1733 539 325 107 21 chr3 150578152 150579041 -9020742 + L1M2 LINE L1 3545 4509 -2333 1 1733 47 19 0 0 chr3 150579440 150579494 -9020289 + AT_rich Low_complexity Low_complexity 1 54 0 1 1733 608 368 82 16 chr3 150579833 150580333 -9019450 + L1M2 LINE L1 5089 5621 -1224 1 1733 1106 75 7 0 chr3 150580333 150580479 -9019304 + B1_Mus2 SINE Alu 1 147 0 1 1733 232 25 75 0 chr3 150580486 150580526 -9019257 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 1 1733 1222 316 50 12 chr3 150580662 150581062 -9018721 - MTD LTR MaLR -2 417 3 1 1733 308 320 54 46 chr3 150581205 150581432 -9018351 + L1M2 LINE L1 5965 6197 -796 1 1733 761 310 85 101 chr3 150581780 150582146 -9017637 - MTE2a LTR MaLR 0 379 20 1 1733 657 215 29 0 chr3 150582375 150582547 -9017236 + L1MA7 LINE L1 6114 6290 -1 1 1733 387 323 57 82 chr3 150583616 150583933 -9015850 + RMER1C Other Other 568 876 -466 1 1733 8410 28 1 0 chr3 150583959 150585102 -9014681 - L1Md_T LINE L1 0 6582 5439 1 1733 498 265 199 22 chr3 150585176 150585407 -9014376 + RMER1C Other Other 1069 1340 -2 1 1733 249 108 0 0 chr3 150585437 150585474 -9014309 + (GGA)n Simple_repeat Simple_repeat 1 37 0 1 1733 279 130 0 0 chr3 150585467 150585521 -9014262 + (GA)n Simple_repeat Simple_repeat 1 54 0 1 1733 871 144 29 63 chr3 150585621 150585828 -9013955 - RLTR19-int LTR ERVK -4092 2045 1846 1 1733 828 171 0 7 chr3 150585835 150585976 -9013807 - RLTR19-int LTR ERVK -4499 1638 1499 1 1733 456 19 0 0 chr3 150586164 150586217 -9013566 + (TA)n Simple_repeat Simple_repeat 1 53 0 1 1733 249 33 0 0 chr3 150586217 150586246 -9013537 + (GA)n Simple_repeat Simple_repeat 2 31 0 1 1733 28 48 0 0 chr3 150586733 150586775 -9013008 + AT_rich Low_complexity Low_complexity 1 42 0 1 1733 311 60 20 0 chr3 150586779 150586829 -9012954 + (TTTTTG)n Simple_repeat Simple_repeat 4 54 0 1 1733 1197 48 0 14 chr3 150586840 150586988 -9012795 - B1_Mm SINE Alu 0 147 2 1 1733 231 364 30 0 chr3 150587498 150587597 -9012186 + L1MC LINE L1 5534 5635 -2247 1 1733 951 224 72 37 chr3 150587728 150588060 -9011723 + MT2B LTR ERVL 1 530 -71 1 1733 315 85 0 0 chr3 150588068 150588115 -9011668 + (CAGA)n Simple_repeat Simple_repeat 2 48 0 1 1733 223 0 0 155 chr3 150588115 150588218 -9011565 + (CAGGG)n Simple_repeat Simple_repeat 4 90 0 1 1733 264 281 0 0 chr3 150588219 150588308 -9011475 + (CAGAGA)n Simple_repeat Simple_repeat 1 89 0 1 1733 311 120 0 39 chr3 150588310 150588362 -9011421 + MT2B LTR ERVL 535 584 0 1 1733 1932 188 20 15 chr3 150588375 150588780 -9011003 + MTB_Mm LTR MaLR 1 407 0 1 1733 1096 73 0 0 chr3 150589139 150589276 -9010507 + B1_Mus1 SINE Alu 2 138 -10 1 1733 4247 164 62 4 chr3 150589307 150589744 -9010039 + Lx4B LINE L1 4103 4558 -1319 1 1733 3402 43 30 9 chr3 150589744 150590171 -9009612 + RLTR10C LTR ERVK 1 436 0 1 1733 4247 164 62 4 chr3 150590171 150590406 -9009377 + Lx4B LINE L1 4559 4806 -1071 1 1733 351 0 0 0 chr3 150590406 150590445 -9009338 + (CA)n Simple_repeat Simple_repeat 1 39 0 1 1733 4247 164 62 4 chr3 150590445 150590605 -9009178 + Lx4B LINE L1 4807 4985 -892 1 1733 1017 124 12 0 chr3 150590605 150590766 -9009017 + L1_Mus3 LINE L1 6469 6631 -7 1 1733 2200 194 85 45 chr3 150590788 150591662 -9008121 + Lx4B LINE L1 6403 7058 0 1 1733 597 52 0 0 chr3 150591927 150592004 -9007779 + (TG)n Simple_repeat Simple_repeat 1 77 0 1 1733 281 355 72 72 chr3 150592524 150592676 -9007107 + B4 SINE B4 1 152 -140 1 1733 238 386 16 25 chr3 150592836 150592958 -9006825 - MER45R DNA Tip100 -1459 122 2 1 1733 2116 135 66 11 chr3 150593125 150593506 -9006277 - Lx2B LINE L1 -6 6994 6593 1 1733 22 56 0 0 chr3 150594105 150594141 -9005642 + AT_rich Low_complexity Low_complexity 1 36 0 1 1733 38 22 0 0 chr3 150594470 150594515 -9005268 + AT_rich Low_complexity Low_complexity 1 45 0 1 1733 217 111 40 40 chr3 150594515 150594590 -9005193 + (TTATA)n Simple_repeat Simple_repeat 5 79 0 1 1733 197 122 75 42 chr3 150594645 150594765 -9005018 + (CATAT)n Simple_repeat Simple_repeat 2 125 0 1 1733 285 141 93 53 chr3 150594784 150594934 -9004849 + (CATAT)n Simple_repeat Simple_repeat 3 158 0 1 1733 406 231 240 10 chr3 150595169 150595366 -9004417 - MT2A LTR ERVL 0 533 245 1 1733 376 167 28 0 chr3 150595391 150595463 -9004320 - MT2A LTR ERVL -459 74 1 1 1733 569 179 77 0 chr3 150595495 150595612 -9004171 - B1_Mur4 SINE Alu -20 130 5 1 1733 559 375 11 53 chr3 150595775 150596037 -9003746 + B4A SINE B4 15 265 -27 1 1733 26 64 0 0 chr3 150596373 150596420 -9003363 + AT_rich Low_complexity Low_complexity 1 47 0 1 1733 513 0 0 0 chr3 150596517 150596574 -9003209 + (TG)n Simple_repeat Simple_repeat 1 57 0 1 1733 390 134 0 0 chr3 150597286 150597353 -9002430 + Lx2 LINE L1 6910 6976 -21 1 1733 1093 85 0 0 chr3 150597353 150597494 -9002289 + B1_Mus1 SINE Alu 1 141 -7 1 1733 346 146 70 47 chr3 150597494 150597513 -9002270 + Lx LINE L1 6628 6649 -5 1 1733 252 77 0 0 chr3 150597516 150597555 -9002228 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 1 1733 2088 64 4 0 chr3 150597879 150598146 -9001637 - L1Md_F2 LINE L1 -1 6581 6314 1 1733 6306 62 4 0 chr3 150598146 150598952 -9000831 + L1Md_F3 LINE L1 4778 5586 -297 1 1733 8021 32 19 0 chr3 150598953 150599918 -8999865 + L1Md_F3 LINE L1 5588 6570 -14 1 216 8783 152 23 67 chr3 150600492 150603285 -8996498 - Lx LINE L1 -8 6646 4002 1 1734 26 0 0 0 chr3 150603847 150603873 -8995910 + AT_rich Low_complexity Low_complexity 1 26 0 1 1734 231 215 0 0 chr3 150603887 150603952 -8995831 + CT-rich Low_complexity Low_complexity 4 68 0 1 1734 396 0 0 0 chr3 150605156 150605200 -8994583 + (TA)n Simple_repeat Simple_repeat 2 45 0 1 1734 443 285 109 81 chr3 150606328 150606538 -8993245 + B3 SINE B2 1 216 0 1 1734 242 301 31 88 chr3 150607848 150608008 -8991775 - L2a LINE L2 -14 3412 3262 1 1734 25 83 0 0 chr3 150608272 150608332 -8991451 + AT_rich Low_complexity Low_complexity 1 60 0 1 1734 298 261 34 0 chr3 150608562 150608650 -8991133 + (CATA)n Simple_repeat Simple_repeat 3 93 0 1 1734 2066 324 81 45 chr3 150608853 150610199 -8989584 - ERVL-B4-int LTR ERVL -953 4804 3411 1 1734 567 66 0 0 chr3 150610679 150610755 -8989028 + (TA)n Simple_repeat Simple_repeat 2 77 0 1 1734 2686 272 105 14 chr3 150610755 150611536 -8988247 - ERVL-B4-int LTR ERVL -2924 2790 1952 1 1734 4765 113 14 11 chr3 150611536 150612321 -8987462 + L1_Mus4 LINE L1 5893 6636 0 1 1734 2686 272 105 14 chr3 150612321 150612545 -8987238 - ERVL-B4-int LTR ERVL -3763 1951 1693 1 1734 228 247 13 13 chr3 150612861 150612939 -8986844 + (TG)n Simple_repeat Simple_repeat 1 78 0 1 1734 324 333 39 134 chr3 150612981 150613112 -8986671 - MLT2D LTR ERVL -149 265 142 1 1734 1166 113 22 11 chr3 150613112 150613291 -8986492 + B2_Mm2 SINE B2 1 181 -14 1 1734 324 333 39 134 chr3 150613291 150613443 -8986340 - MLT2D LTR ERVL -273 141 9 1 1734 4820 178 50 11 chr3 150613464 150614403 -8985380 + Lx2 LINE L1 6021 6996 -1 1 1734 1150 75 0 0 chr3 150614543 150614689 -8985094 - B1_Mm SINE Alu -1 146 1 1 1734 24 0 0 0 chr3 150614821 150614845 -8984938 + AT_rich Low_complexity Low_complexity 1 24 0 1 1734 513 76 0 0 chr3 150614882 150614961 -8984822 + (TG)n Simple_repeat Simple_repeat 2 80 0 1 1734 467 311 33 0 chr3 150614965 150615087 -8984696 - RSINE1 SINE B4 -35 130 5 1 1734 181 355 53 53 chr3 150615289 150615420 -8984363 + L2c LINE L2 3253 3383 -4 1 1734 394 148 17 0 chr3 150616109 150616224 -8983559 + T-rich Low_complexity Low_complexity 3 119 0 1 1734 1103 89 7 0 chr3 150616226 150616372 -8983411 - B1_Mus2 SINE Alu 0 147 1 1 1734 189 171 0 0 chr3 150616515 150616550 -8983233 + (CAA)n Simple_repeat Simple_repeat 2 36 0 1 1734 308 228 13 0 chr3 150616571 150616650 -8983133 + MLT1A1 LTR MaLR 317 396 -12 1 1734 22 0 0 0 chr3 150617221 150617243 -8982540 + AT_rich Low_complexity Low_complexity 1 22 0 1 1734 292 128 26 0 chr3 150617602 150617680 -8982103 + (CAAA)n Simple_repeat Simple_repeat 2 81 0 1 1734 23 0 0 0 chr3 150618370 150618393 -8981390 + AT_rich Low_complexity Low_complexity 1 23 0 1 1734 186 43 0 0 chr3 150618695 150618718 -8981065 + (TC)n Simple_repeat Simple_repeat 1 23 0 1 1734 726 277 25 38 chr3 150618781 150618809 -8980974 - Lx9 LINE L1 -183 7461 7431 1 1734 312 70 0 0 chr3 150618809 150618852 -8980931 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 1734 726 277 25 38 chr3 150618852 150619063 -8980720 - Lx9 LINE L1 -214 7430 7225 1 1734 188 114 0 43 chr3 150619140 150619186 -8980597 + (CCAA)n Simple_repeat Simple_repeat 4 47 0 1 1734 287 318 0 0 chr3 150619978 150620044 -8979739 + ID4_ SINE ID 18 83 0 2 1734 254 115 0 19 chr3 150620044 150620097 -8979686 + (CAAAA)n Simple_repeat Simple_repeat 4 55 0 2 1734 182 156 60 100 chr3 150620711 150620761 -8979022 + L3b LINE CR1 285 332 -150 2 1734 492 314 76 15 chr3 150621206 150621403 -8978380 + B3 SINE B2 8 216 0 2 1734 22 0 0 0 chr3 150621873 150621895 -8977888 + AT_rich Low_complexity Low_complexity 1 22 0 2 1734 296 345 11 22 chr3 150621979 150622068 -8977715 + B4A SINE B4 2 89 -203 2 1734 22 0 0 0 chr3 150622127 150622149 -8977634 + AT_rich Low_complexity Low_complexity 1 22 0 2 1734 851 48 0 0 chr3 150622213 150622317 -8977466 - L1Md_T LINE L1 -669 5913 5810 2 1734 5163 68 16 0 chr3 150622317 150622990 -8976793 + L1Md_T LINE L1 5899 6582 0 2 1734 8438 29 0 0 chr3 150623007 150623990 -8975793 + L1Md_T LINE L1 5587 6569 -13 2 1734 268 376 73 19 chr3 150624218 150624528 -8975255 + MLT1G1 LTR MaLR 1 372 -207 2 1734 440 229 138 20 chr3 150626280 150626508 -8973275 + L1MC LINE L1 3603 3861 -1986 2 1734 292 327 115 0 chr3 150626640 150626753 -8973030 - B4A SINE B4 -115 177 52 2 1734 701 67 10 0 chr3 150626830 150626934 -8972849 + (GA)n Simple_repeat Simple_repeat 2 106 0 2 1734 611 88 0 50 chr3 150627447 150627566 -8972217 - L1Md_F2 LINE L1 0 6582 6470 2 1734 4844 22 3 0 chr3 150627566 150628319 -8971464 + L1Md_F3 LINE L1 5393 6147 -437 2 1734 1508 267 81 27 chr3 150628505 150629073 -8970710 - Lx6 LINE L1 -31 7429 6455 2 1734 4370 147 72 9 chr3 150630450 150631232 -8968551 - Lx3B LINE L1 -1 6972 6142 2 1734 915 59 16 0 chr3 150631232 150631370 -8968413 - Lx3C LINE L1 -1049 5927 5776 2 1734 206 135 18 71 chr3 150631581 150631637 -8968146 + (CAAA)n Simple_repeat Simple_repeat 2 54 0 2 1734 264 111 0 0 chr3 150633143 150633188 -8966595 + (CAGAGA)n Simple_repeat Simple_repeat 3 47 0 2 1734 26 50 0 0 chr3 150634775 150634815 -8964968 + AT_rich Low_complexity Low_complexity 1 40 0 2 1734 200 343 0 20 chr3 150635100 150635201 -8964582 + A-rich Low_complexity Low_complexity 1 99 0 2 1734 220 264 0 40 chr3 150635108 150635183 -8964600 + GA-rich Low_complexity Low_complexity 4 75 0 2 1734 830 194 4 4 chr3 150635212 150635451 -8964332 + GA-rich Low_complexity Low_complexity 1 239 0 2 1734 299 232 4 12 chr3 150635892 150635978 -8963805 + Lx6 LINE L1 5633 5752 -410 2 1734 1143 226 52 0 chr3 150636132 150636402 -8963381 + Lx7 LINE L1 5629 5912 -1784 2 1734 227 242 16 16 chr3 150636445 150636508 -8963275 + MTD LTR MaLR 18 80 -341 2 1734 432 190 83 33 chr3 150636523 150636643 -8963140 + MTD LTR MaLR 272 397 -22 2 1734 972 81 66 0 chr3 150636911 150637047 -8962736 + B1_Mus2 SINE Alu 3 147 0 2 1734 357 24 0 0 chr3 150637477 150637519 -8962264 + (TTA)n Simple_repeat Simple_repeat 3 44 0 2 1734 37 52 0 0 chr3 150639416 150639474 -8960309 + AT_rich Low_complexity Low_complexity 1 58 0 2 1734 661 359 47 22 chr3 150639836 150640238 -8959545 + Lx8 LINE L1 6446 6857 -616 2 1734 24 0 0 0 chr3 150640238 150640262 -8959521 + AT_rich Low_complexity Low_complexity 1 24 0 2 1734 937 139 12 6 chr3 150640272 150640445 -8959338 - L1_Mus3 LINE L1 -7 6631 6458 2 1734 304 327 158 11 chr3 150640530 150640790 -8958993 + Lx8 LINE L1 6960 7257 -216 2 1734 21 36 0 0 chr3 150640869 150640897 -8958886 + AT_rich Low_complexity Low_complexity 1 28 0 2 1734 324 0 0 0 chr3 150641061 150641097 -8958686 + (GAAA)n Simple_repeat Simple_repeat 1 36 0 2 1734 993 62 0 0 chr3 150641097 150641226 -8958557 + (GGGAA)n Simple_repeat Simple_repeat 3 131 0 2 1734 432 0 0 0 chr3 150641226 150641273 -8958510 + (GAAA)n Simple_repeat Simple_repeat 1 48 0 2 1734 509 344 5 11 chr3 150641338 150641526 -8958257 - Lx7 LINE L1 -422 7274 7088 2 1734 306 0 0 0 chr3 150641533 150641567 -8958216 + (TAAAA)n Simple_repeat Simple_repeat 1 34 0 2 1734 33 73 0 0 chr3 150641671 150641739 -8958044 + AT_rich Low_complexity Low_complexity 1 68 0 2 1734 298 295 70 19 chr3 150642063 150642277 -8957506 - L1M4 LINE L1 -986 5160 4936 2 1734 423 255 31 88 chr3 150644316 150644475 -8955308 + RSINE1 SINE B4 16 165 0 2 1734 369 167 0 0 chr3 150644475 150644553 -8955230 + (CA)n Simple_repeat Simple_repeat 1 78 0 2 1734 861 172 0 0 chr3 150644567 150644747 -8955036 + (CA)n Simple_repeat Simple_repeat 1 180 0 2 1734 1913 188 178 44 chr3 150645711 150646251 -8953532 - Lx5 LINE L1 -4 7054 6419 2 1734 1848 204 43 22 chr3 150646254 150646669 -8953114 + L1_Mur2 LINE L1 5402 5825 -52 2 1734 32 67 0 0 chr3 150646914 150646974 -8952809 + AT_rich Low_complexity Low_complexity 1 60 0 2 1734 7628 105 22 11 chr3 150646997 150648141 -8951642 - Lx3_Mus LINE L1 -9 7000 5844 2 1734 5517 82 35 4 chr3 150648141 150648936 -8950847 + L1_Mur1 LINE L1 4824 5643 -243 2 1734 192 77 0 0 chr3 150649146 150649172 -8950611 + (CAA)n Simple_repeat Simple_repeat 2 27 0 2 1734 858 311 98 43 chr3 150649342 150649688 -8950095 - ORR1D2 LTR MaLR 0 370 6 2 1734 405 0 0 0 chr3 150649821 150649866 -8949917 + (TC)n Simple_repeat Simple_repeat 2 46 0 2 1734 489 17 0 0 chr3 150649884 150649942 -8949841 + (CA)n Simple_repeat Simple_repeat 2 59 0 2 1734 349 273 0 0 chr3 150650114 150650180 -8949603 + ID4_ SINE ID 10 75 -8 2 1734 942 293 77 20 chr3 150650760 150651112 -8948671 + MTEb LTR MaLR 3 374 -5 2 1734 717 63 27 9 chr3 150651596 150651708 -8948075 + (GAAA)n Simple_repeat Simple_repeat 3 116 0 2 1734 5031 58 0 2 chr3 150651708 150652331 -8947452 + L1_Mus1 LINE L1 5946 6567 0 2 1734 192 77 0 0 chr3 150652345 150652371 -8947412 + (A)n Simple_repeat Simple_repeat 1 26 0 2 1734 40 0 0 0 chr3 150653147 150653187 -8946596 + AT_rich Low_complexity Low_complexity 1 40 0 2 1734 2423 273 71 59 chr3 150653318 150654166 -8945617 - RMER13A LTR ERVK -2 858 1 2 1734 367 361 71 28 chr3 150654449 150654631 -8945152 + B3 SINE B2 2 191 -25 2 1734 752 280 115 29 chr3 150657829 150658178 -8941605 - MTEb LTR MaLR 0 379 1 2 1734 378 0 0 0 chr3 150658333 150658375 -8941408 + (TG)n Simple_repeat Simple_repeat 1 42 0 2 1734 639 39 0 0 chr3 150658375 150658452 -8941331 + (GA)n Simple_repeat Simple_repeat 1 78 0 2 1734 186 43 0 0 chr3 150658504 150658527 -8941256 + (TG)n Simple_repeat Simple_repeat 1 23 0 2 1734 231 36 0 0 chr3 150658527 150658554 -8941229 + (GA)n Simple_repeat Simple_repeat 1 28 0 2 1734 300 137 0 0 chr3 150658558 150658609 -8941174 + (TG)n Simple_repeat Simple_repeat 1 51 0 2 1734 22 0 0 0 chr3 150659327 150659349 -8940434 + AT_rich Low_complexity Low_complexity 1 22 0 2 1734 1729 187 88 3 chr3 150659822 150660187 -8939596 - MTC LTR MaLR -25 396 1 2 1734 964 76 30 15 chr3 150660821 150660954 -8938829 + B1_Mus2 SINE Alu 1 135 -12 2 1734 272 96 0 37 chr3 150660973 150661027 -8938756 + (TTTTG)n Simple_repeat Simple_repeat 3 54 0 2 1734 25 0 0 0 chr3 150661568 150661593 -8938190 + AT_rich Low_complexity Low_complexity 1 25 0 2 1734 559 142 9 9 chr3 150667621 150667728 -8932055 + A-rich Low_complexity Low_complexity 4 110 0 2 1734 426 96 0 0 chr3 150667776 150667849 -8931934 + (TGG)n Simple_repeat Simple_repeat 1 73 0 2 1734 552 281 5 59 chr3 150668365 150668569 -8931214 + B3A SINE B2 5 197 -1 2 1734 465 317 88 18 chr3 150671309 150671626 -8928157 + ORR1E LTR MaLR 5 353 -6 2 1734 382 115 0 0 chr3 150671997 150672049 -8927734 - L1_Mus1 LINE L1 -385 6182 6131 2 1734 3116 65 5 0 chr3 150672049 150672446 -8927337 + L1_Mus1 LINE L1 6167 6565 -2 2 1734 180 0 0 0 chr3 150672459 150672479 -8927304 + (CAA)n Simple_repeat Simple_repeat 2 21 0 2 1734 343 200 0 0 chr3 150673015 150673080 -8926703 + MYSERV6-int LTR ERVK 58 122 -8837 2 1734 189 0 0 0 chr3 150673529 150673550 -8926233 + (TTTTA)n Simple_repeat Simple_repeat 5 25 0 2 1734 7573 56 1 3 chr3 150673552 150674498 -8925285 - L1Md_F2 LINE L1 -3 6579 5636 2 1734 422 110 41 13 chr3 150674500 150674579 -8925204 - MYSERV16_I-int LTR ERVK -463 1863 1791 2 1734 1111 126 21 10 chr3 150674579 150674772 -8925011 + L1Md_F2 LINE L1 6388 6582 0 2 1734 1760 168 41 56 chr3 150674773 150675165 -8924618 + MYSERV6-int LTR ERVK 8572 8957 -2 2 1734 590 277 66 36 chr3 150675167 150675374 -8924409 + RLTR15 LTR ERVK 1 217 -142 2 1734 258 81 0 0 chr3 150675374 150675411 -8924372 + (CA)n Simple_repeat Simple_repeat 2 38 0 2 1734 590 277 66 36 chr3 150675411 150675536 -8924247 + RLTR15 LTR ERVK 218 342 -17 2 1734 2105 248 51 25 chr3 150675557 150676027 -8923756 - Lx6 LINE L1 -107 7353 6883 2 1734 623 37 12 0 chr3 150676027 150676109 -8923674 + (TC)n Simple_repeat Simple_repeat 2 84 0 2 1734 2105 248 51 25 chr3 150676109 150676208 -8923575 - Lx6 LINE L1 -578 6882 6769 2 1734 264 59 0 0 chr3 150676319 150676353 -8923430 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 2 1734 23 0 0 0 chr3 150676404 150676427 -8923356 + AT_rich Low_complexity Low_complexity 1 23 0 2 1734 208 111 0 43 chr3 150676797 150676844 -8922939 + A-rich Low_complexity Low_complexity 2 46 0 2 1734 331 288 17 35 chr3 150677479 150677594 -8922189 - ID_B1 SINE B4 -2 222 110 2 1734 500 290 49 11 chr3 150677647 150677832 -8921951 - B3A SINE B2 -6 192 1 2 1734 370 346 25 60 chr3 150680134 150680334 -8919449 + RMER30 DNA MER1_type 9 201 -1 2 1734 189 353 73 0 chr3 150680430 150680498 -8919285 - L2c LINE L2 -229 3158 3086 2 1734 23 0 0 0 chr3 150681208 150681231 -8918552 + AT_rich Low_complexity Low_complexity 1 23 0 2 1734 21 0 0 0 chr3 150681438 150681459 -8918324 + AT_rich Low_complexity Low_complexity 1 21 0 2 1734 24 32 0 0 chr3 150681580 150681611 -8918172 + AT_rich Low_complexity Low_complexity 1 31 0 2 1734 23 33 0 0 chr3 150682511 150682541 -8917242 + AT_rich Low_complexity Low_complexity 1 30 0 2 1734 487 173 9 61 chr3 150682700 150682836 -8916947 - ORR1B1 LTR MaLR -237 157 1 2 1734 275 342 165 21 chr3 150683237 150683473 -8916310 + RMER15 LTR ERVL 300 569 -6 2 1734 22 0 0 0 chr3 150683965 150683987 -8915796 + AT_rich Low_complexity Low_complexity 1 22 0 2 1734 211 286 71 71 chr3 150685667 150685765 -8914018 + RSINE1 SINE B4 7 104 -61 2 1734 22 0 0 0 chr3 150685804 150685826 -8913957 + AT_rich Low_complexity Low_complexity 1 22 0 3 1734 404 348 0 0 chr3 150686721 150686859 -8912924 + Lx8 LINE L1 6191 6328 -1145 3 1734 1117 333 58 18 chr3 150686954 150687520 -8912263 + Lx8 LINE L1 6468 7056 -417 3 1734 28 29 0 0 chr3 150687624 150687659 -8912124 + AT_rich Low_complexity Low_complexity 1 35 0 3 1734 32 43 0 0 chr3 150688223 150688269 -8911514 + AT_rich Low_complexity Low_complexity 1 46 0 3 1734 238 224 15 0 chr3 150689242 150689309 -8910474 + (TA)n Simple_repeat Simple_repeat 1 68 0 3 1734 315 299 0 23 chr3 150689445 150689575 -8910208 + GA-rich Low_complexity Low_complexity 2 128 0 3 1734 1302 26 0 0 chr3 150689588 150689742 -8910041 + (GGAGA)n Simple_repeat Simple_repeat 4 157 0 3 1734 6569 16 0 0 chr3 150691844 150692602 -8907181 - L1Md_A LINE L1 -1152 4731 3974 3 1734 7513 9 0 0 chr3 150692597 150693448 -8906335 + L1Md_A LINE L1 4736 5586 -297 3 1734 8710 18 0 0 chr3 150693448 150694444 -8905339 + L1Md_A LINE L1 5587 6582 0 3 1734 318 279 61 35 chr3 150694464 150694579 -8905204 - MLT1A0 LTR MaLR -235 130 13 3 1734 1734 155 10 19 chr3 150694956 150695265 -8904518 + Lx3B LINE L1 6666 6971 -2 3 1734 20988 161 25 74 chr3 150695337 150698987 -8900796 + L1_Mus2 LINE L1 469 4099 -2467 3 1734 838 102 34 0 chr3 150698987 150699105 -8900678 - RLTR10A LTR ERVK 0 311 190 3 1734 1898 99 3 3 chr3 150699074 150699358 -8900425 - RLTR10A LTR ERVK -127 284 1 3 1734 20988 161 25 74 chr3 150699358 150701836 -8897947 + L1_Mus2 LINE L1 4100 6566 0 3 1734 8800 129 18 4 chr3 150702237 150704509 -8895274 + L1_Mus4 LINE L1 4327 6633 -3 3 1734 2433 65 75 0 chr3 150705586 150705908 -8893875 - ORR1A1 LTR MaLR 0 346 1 3 1734 531 322 6 62 chr3 150706399 150706561 -8893222 + B3A SINE B2 1 153 -45 3 1734 3208 118 63 61 chr3 150706564 150707139 -8892644 + MT2B2 LTR ERVL 1 576 -8 3 1734 378 0 0 0 chr3 150707160 150707202 -8892581 + (CA)n Simple_repeat Simple_repeat 2 43 0 3 1734 420 149 0 0 chr3 150707436 150707503 -8892280 - RMER6C LTR ERVK 0 690 624 3 1734 230 0 0 0 chr3 150707503 150707530 -8892253 - MT2B2 LTR ERVL 0 493 467 3 1734 1459 86 5 0 chr3 150707532 150707730 -8892053 - MT2B2 LTR ERVL -368 216 18 3 1734 237 264 27 27 chr3 150707769 150707843 -8891940 - L1_Rod LINE L1 -337 5510 5437 3 1734 225 0 0 0 chr3 150707844 150707869 -8891914 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 3 1734 247 196 69 35 chr3 150708428 150708486 -8891297 + MER20 DNA MER1_type 1 60 -159 3 1734 213 94 0 0 chr3 150708594 150708626 -8891157 + (GAAA)n Simple_repeat Simple_repeat 1 32 0 3 1734 420 20 0 0 chr3 150709797 150709846 -8889937 + (TG)n Simple_repeat Simple_repeat 2 50 0 3 1734 594 306 25 0 chr3 150709849 150710006 -8889777 - B3A SINE B2 -36 162 2 3 1734 198 143 0 0 chr3 150710148 150710183 -8889600 + (TG)n Simple_repeat Simple_repeat 1 35 0 3 1734 345 82 0 0 chr3 150710183 150710232 -8889551 + (CA)n Simple_repeat Simple_repeat 1 49 0 3 1734 329 0 0 24 chr3 150710482 150710524 -8889259 + (TAA)n Simple_repeat Simple_repeat 2 42 0 3 1734 464 302 125 43 chr3 150710526 150710855 -8888928 - Lx9 LINE L1 -427 7217 6862 3 1734 277 302 88 54 chr3 150712214 150712361 -8887422 - MLT1J LTR MaLR -346 166 15 3 1734 21 89 0 0 chr3 150712549 150712605 -8887178 + AT_rich Low_complexity Low_complexity 1 56 0 3 1734 22 56 0 0 chr3 150713121 150713157 -8886626 + AT_rich Low_complexity Low_complexity 1 36 0 3 1734 3901 76 6 9 chr3 150713636 150714167 -8885616 - L1Md_F2 LINE L1 -12 6570 6042 3 1734 321 216 93 13 chr3 150715047 150715122 -8884661 - B4A SINE B4 -26 266 186 3 1734 247 316 13 26 chr3 150715204 150715282 -8884501 - B3 SINE B2 -139 77 1 3 1734 445 335 36 5 chr3 150715401 150715593 -8884190 - Lx9 LINE L1 -243 7401 7204 3 1734 473 142 27 13 chr3 150715656 150715806 -8883977 + (TAGA)n Simple_repeat Simple_repeat 1 152 0 3 1734 424 278 8 16 chr3 150715976 150716104 -8883679 - Lx9 LINE L1 -591 7053 6927 3 1734 402 57 0 0 chr3 150716268 150716321 -8883462 + (CA)n Simple_repeat Simple_repeat 1 53 0 3 1734 192 77 0 0 chr3 150716324 150716350 -8883433 + (CCA)n Simple_repeat Simple_repeat 1 26 0 3 1734 21 36 0 0 chr3 150717566 150717594 -8882189 + AT_rich Low_complexity Low_complexity 1 28 0 3 1734 438 20 0 0 chr3 150718325 150718376 -8881407 + (TA)n Simple_repeat Simple_repeat 1 51 0 3 1734 461 316 82 22 chr3 150718376 150718443 -8881340 - LTR37A LTR ERV1 -27 399 337 3 1734 1833 194 125 42 chr3 150718443 150718964 -8880819 - RMER2 LTR ERV1 -3 564 1 3 1734 461 316 82 22 chr3 150718964 150719165 -8880618 - LTR37A LTR ERV1 -90 336 115 3 1734 244 143 18 18 chr3 150720900 150720957 -8878826 + CT-rich Low_complexity Low_complexity 3 59 0 3 1734 498 0 0 0 chr3 150720979 150721041 -8878742 - L1Md_T LINE L1 0 6582 6521 3 1734 3952 205 52 7 chr3 150721228 150722040 -8877743 - Lx5 LINE L1 0 7050 6203 3 1734 1721 194 109 26 chr3 150722045 150722505 -8877278 + Lx4B LINE L1 5698 6195 -863 3 1734 1642 202 60 19 chr3 150722577 150722946 -8876837 - ORR1C2 LTR MaLR 0 384 1 3 1734 840 135 35 0 chr3 150723365 150723506 -8876277 - URR1A DNA MER1_type 0 226 81 3 1734 238 341 23 39 chr3 150724181 150724309 -8875474 - L1ME2 LINE L1 -90 6074 5949 3 1734 323 327 61 25 chr3 150724610 150724773 -8875010 - L1ME2 LINE L1 -534 5630 5462 3 1734 281 291 240 13 chr3 150725210 150725527 -8874256 - Lx9 LINE L1 -25 7619 7231 3 1734 501 17 0 0 chr3 150725527 150725585 -8874198 + (TA)n Simple_repeat Simple_repeat 2 59 0 3 1734 779 276 10 81 chr3 150725755 150726051 -8873732 - Lx9 LINE L1 -432 7212 6938 3 1734 293 287 118 79 chr3 150726121 150726401 -8873382 + L2 LINE L2 721 1011 -2408 3 1734 468 0 0 0 chr3 150727160 150727212 -8872571 + (TA)n Simple_repeat Simple_repeat 1 52 0 3 1734 264 350 0 0 chr3 150727263 150727343 -8872440 + L2 LINE L2 2286 2365 -1054 3 1734 6074 45 3 9 chr3 150727627 150728385 -8871398 + L1Md_F2 LINE L1 5829 6581 -1 3 1734 276 357 103 54 chr3 150728663 150729033 -8870750 + MLT1D LTR MaLR 1 388 -117 3 1734 279 79 0 0 chr3 150729180 150729218 -8870565 + (T)n Simple_repeat Simple_repeat 1 38 0 3 1734 1136 82 0 0 chr3 150729221 150729368 -8870415 - B1_Mus1 SINE Alu 0 148 2 3 1734 339 25 0 0 chr3 150729687 150729727 -8870056 + (TG)n Simple_repeat Simple_repeat 2 41 0 3 1734 263 146 18 0 chr3 150729728 150729783 -8870000 + GA-rich Low_complexity Low_complexity 2 57 0 3 1734 387 0 0 0 chr3 150730675 150730718 -8869065 + (TA)n Simple_repeat Simple_repeat 1 43 0 3 1734 225 0 0 0 chr3 150731852 150731877 -8867906 + (T)n Simple_repeat Simple_repeat 1 25 0 3 1734 479 347 362 42 chr3 150732116 150732403 -8867380 - MTE2b LTR MaLR 0 379 1 3 1735 252 308 82 27 chr3 150733493 150733640 -8866143 + MER34A1 LTR ERV1 358 512 -75 3 1735 1272 109 0 40 chr3 150733719 150733920 -8865863 - B2_Mm2 SINE B2 -1 194 2 3 1735 234 0 0 0 chr3 150734080 150734106 -8865677 + (T)n Simple_repeat Simple_repeat 1 26 0 3 1735 25 0 0 0 chr3 150734927 150734952 -8864831 + AT_rich Low_complexity Low_complexity 1 25 0 3 1735 23 33 0 0 chr3 150735149 150735179 -8864604 + AT_rich Low_complexity Low_complexity 1 30 0 3 1735 222 164 27 27 chr3 150735187 150735262 -8864521 + (TATG)n Simple_repeat Simple_repeat 2 76 0 3 1735 711 81 0 0 chr3 150735832 150735931 -8863852 + (GAAA)n Simple_repeat Simple_repeat 2 100 0 3 1735 21 0 0 0 chr3 150736875 150736896 -8862887 + AT_rich Low_complexity Low_complexity 1 21 0 3 1735 465 19 0 0 chr3 150738496 150738550 -8861233 + (TG)n Simple_repeat Simple_repeat 2 55 0 3 1735 579 274 37 7 chr3 150738602 150738738 -8861045 - RSINE1 SINE B4 -24 141 2 3 1735 298 247 137 43 chr3 150741276 150741437 -8858346 + LTR16A1 LTR ERVL 228 403 -53 3 1735 625 265 56 93 chr3 150741448 150741664 -8858119 + B3 SINE B2 8 215 -1 3 1735 31 44 0 0 chr3 150742858 150742903 -8856880 + AT_rich Low_complexity Low_complexity 1 45 0 3 1735 468 289 139 0 chr3 150742903 150743069 -8856714 - B3 SINE B2 0 216 28 3 1735 198 103 0 0 chr3 150743189 150743218 -8856565 + (A)n Simple_repeat Simple_repeat 1 29 0 3 1735 344 304 53 9 chr3 150743429 150743542 -8856241 + Lx7 LINE L1 6584 6701 -995 3 1735 738 358 42 36 chr3 150743564 150744179 -8855604 + Lx8 LINE L1 6795 7413 -60 3 1735 4071 48 2 0 chr3 150744248 150744746 -8855037 + L1Md_F2 LINE L1 6071 6569 -13 3 1735 21 0 0 0 chr3 150745093 150745114 -8854669 + AT_rich Low_complexity Low_complexity 1 21 0 3 1735 284 197 0 29 chr3 150745854 150745922 -8853861 - L1MC1 LINE L1 -1 6332 6267 3 1735 408 329 68 16 chr3 150746048 150746369 -8853414 - L1MC1 LINE L1 -141 6192 5855 3 1735 779 327 39 32 chr3 150746416 150746697 -8853086 + B4 SINE B4 10 292 0 3 1735 216 0 0 0 chr3 150746697 150746721 -8853062 + (CA)n Simple_repeat Simple_repeat 2 25 0 3 1735 351 280 67 31 chr3 150746793 150746988 -8852795 - L1MC1 LINE L1 -869 5277 5076 3 1735 340 294 129 32 chr3 150747038 150747347 -8852436 - L1MC1 LINE L1 -1138 5008 4670 3 1735 280 323 45 38 chr3 150748690 150748822 -8850961 + MIRb SINE MIR 129 261 -7 3 1735 5039 191 20 65 chr3 150749334 150749809 -8849974 + Lx6 LINE L1 4195 4634 -1246 3 1735 1125 102 0 0 chr3 150749809 150749975 -8849808 + (GGAA)n Simple_repeat Simple_repeat 2 167 0 3 1735 5039 191 20 65 chr3 150749975 150750454 -8849329 + Lx6 LINE L1 4635 5114 -766 3 1735 1615 85 0 18 chr3 150750454 150750682 -8849101 + L1_Mus2 LINE L1 6341 6564 -2 3 1735 5039 191 20 65 chr3 150750682 150750949 -8848834 + Lx6 LINE L1 5115 5361 -519 3 1735 3263 73 16 16 chr3 150750948 150751394 -8848389 - Lx LINE L1 -493 6161 5716 3 1735 2528 122 40 2 chr3 150751394 150751672 -8848111 + Lx LINE L1 6238 6516 -138 3 1735 195 42 0 0 chr3 150751672 150751696 -8848087 + (TGGG)n Simple_repeat Simple_repeat 4 27 0 3 1735 2528 122 40 2 chr3 150751696 150751818 -8847965 + Lx LINE L1 6517 6652 -2 3 1735 2361 235 103 4 chr3 150751826 150753048 -8846735 + Lx6 LINE L1 5351 6693 -767 3 1735 2089 235 119 15 chr3 150753108 150753656 -8846127 + Lx6 LINE L1 6852 7456 -4 3 1735 498 308 115 24 chr3 150753778 150754382 -8845401 - L1M4 LINE L1 -1127 5019 4351 3 1735 6780 121 44 29 chr3 150754400 150755580 -8844203 - Lx3C LINE L1 -7 6969 5772 3 1735 335 336 103 37 chr3 150755671 150755960 -8843823 + L1MB5 LINE L1 5483 5783 -391 3 1735 405 0 0 0 chr3 150755960 150756005 -8843778 + (TG)n Simple_repeat Simple_repeat 2 46 0 3 1735 335 284 118 57 chr3 150756005 150756181 -8843602 + L1MB5 LINE L1 5782 5978 -200 3 1735 306 309 145 30 chr3 150756824 150757127 -8842656 - L1M2 LINE L1 -483 5817 5480 3 1735 399 328 30 23 chr3 150757142 150757404 -8842379 + L1_Mur3 LINE L1 5115 5378 -502 3 1735 268 300 96 37 chr3 150757478 150757613 -8842170 + B1F SINE Alu 6 148 -1 3 1735 221 183 16 32 chr3 150757689 150757751 -8842032 + A-rich Low_complexity Low_complexity 3 63 0 3 1735 1386 124 0 0 chr3 150758621 150758831 -8840952 + L1_Mus4 LINE L1 6246 6455 -181 3 1735 182 242 123 66 chr3 150759273 150759379 -8840404 + L2a LINE L2 3315 3426 0 4 1735 3350 41 0 130 chr3 150759402 150759903 -8839880 - RLTR10C LTR ERVK 0 436 1 4 1735 234 282 117 32 chr3 150761666 150761820 -8837963 + MLT1F LTR MaLR 347 513 -35 4 1735 243 0 0 0 chr3 150762468 150762495 -8837288 + (GA)n Simple_repeat Simple_repeat 1 27 0 4 1735 184 286 36 0 chr3 150762641 150762697 -8837086 + MIRb SINE MIR 201 258 -10 4 1735 265 253 75 12 chr3 150762792 150762872 -8836911 + PB1D7 SINE Alu 36 120 0 4 1735 185 391 21 11 chr3 150763430 150763523 -8836260 + L3 LINE CR1 3680 3773 -716 4 1735 378 0 0 0 chr3 150763554 150763596 -8836187 + (CA)n Simple_repeat Simple_repeat 2 43 0 4 1735 3900 275 13 11 chr3 150763989 150764975 -8834808 + RodERV21-int LTR ERV1 1282 2269 -2722 4 1735 209 276 0 17 chr3 150765158 150765217 -8834566 + CT-rich Low_complexity Low_complexity 1 58 0 4 1735 1934 289 77 71 chr3 150765360 150766499 -8833284 + Lx6 LINE L1 6137 7541 -155 4 1735 583 160 87 16 chr3 150766478 150766605 -8833178 - Lx2 LINE L1 -1 6996 6861 4 1735 21 82 0 0 chr3 150766609 150766658 -8833125 + AT_rich Low_complexity Low_complexity 1 49 0 4 1735 250 98 39 0 chr3 150766739 150766790 -8832993 + (TG)n Simple_repeat Simple_repeat 2 54 0 4 1735 3404 44 44 7 chr3 150766923 150767358 -8832425 - L1Md_F3 LINE L1 0 6584 6134 4 1735 26719 101 16 12 chr3 150767359 150772583 -8827200 - L1Md_A LINE L1 -16 5864 422 4 1735 536 357 31 2 chr3 150772598 150772851 -8826932 - MLT2B1 LTR ERVL -251 264 5 4 1735 216 0 0 0 chr3 150773748 150773772 -8826011 + (TAA)n Simple_repeat Simple_repeat 1 24 0 4 1735 291 51 0 0 chr3 150774126 150774150 -8825633 + (TA)n Simple_repeat Simple_repeat 1 24 0 4 1735 351 0 0 0 chr3 150774150 150774189 -8825594 + (TG)n Simple_repeat Simple_repeat 2 40 0 4 1735 291 51 0 0 chr3 150774189 150774203 -8825580 + (TA)n Simple_repeat Simple_repeat 1 14 0 4 1735 333 0 0 0 chr3 150775713 150775750 -8824033 + (CA)n Simple_repeat Simple_repeat 2 38 0 4 1735 423 0 0 0 chr3 150775750 150775796 -8823987 + (GA)n Simple_repeat Simple_repeat 2 48 0 4 1735 216 0 0 0 chr3 150776091 150776115 -8823668 + (CAAA)n Simple_repeat Simple_repeat 3 26 0 4 1735 208 218 55 0 chr3 150777299 150777354 -8822429 + CT-rich Low_complexity Low_complexity 1 58 0 4 1735 3117 209 4 36 chr3 150777664 150778339 -8821444 + Lx5 LINE L1 6389 7042 -8 4 1735 414 0 0 0 chr3 150778351 150778397 -8821386 + (TG)n Simple_repeat Simple_repeat 1 46 0 4 1735 209 379 23 0 chr3 150778397 150778484 -8821299 + MIRb SINE MIR 27 115 -153 4 1735 335 331 75 0 chr3 150781417 150781550 -8818233 + ID_B1 SINE B4 82 224 0 4 1735 315 0 0 0 chr3 150781554 150781589 -8818194 + (TAGA)n Simple_repeat Simple_repeat 3 37 0 4 1735 239 79 26 0 chr3 150781873 150781911 -8817872 + (CA)n Simple_repeat Simple_repeat 2 40 0 4 1735 216 158 0 0 chr3 150781915 150781953 -8817830 + (TA)n Simple_repeat Simple_repeat 1 38 0 4 1735 237 211 0 0 chr3 150782268 150782320 -8817463 + (CATATA)n Simple_repeat Simple_repeat 4 55 0 4 1735 350 314 181 49 chr3 150782647 150783116 -8816667 + MLT1E3 LTR MaLR 6 586 -38 4 1735 198 103 0 0 chr3 150784300 150784329 -8815454 + (A)n Simple_repeat Simple_repeat 1 29 0 4 1735 358 362 103 30 chr3 150784729 150785068 -8814715 + L3 LINE CR1 3994 4357 -132 4 1735 351 0 0 0 chr3 150785150 150785189 -8814594 + (CA)n Simple_repeat Simple_repeat 2 40 0 4 1735 274 230 0 63 chr3 150786371 150786450 -8813333 + MT2B LTR ERVL 191 264 -337 4 1735 726 78 0 0 chr3 150786383 150786485 -8813298 + B1_Mus2 SINE Alu 46 147 0 4 1735 186 43 0 0 chr3 150786500 150786523 -8813260 + (CAA)n Simple_repeat Simple_repeat 2 24 0 4 1735 429 255 47 0 chr3 150786767 150786873 -8812910 + PB1D10 SINE Alu 6 116 -1 4 1735 291 28 0 0 chr3 150787744 150787780 -8812003 + (TTG)n Simple_repeat Simple_repeat 1 36 0 4 1735 1177 283 20 28 chr3 150787909 150788265 -8811518 + ORR1D1 LTR MaLR 21 373 -1 4 1735 1432 222 66 70 chr3 150788266 150788693 -8811090 + ORR1D1-int LTR MaLR 1 425 -945 4 1735 418 147 27 0 chr3 150788693 150788768 -8811015 + ORR1D1 LTR MaLR 298 374 0 4 1735 474 131 10 20 chr3 150788855 150788956 -8810827 + CT-rich Low_complexity Low_complexity 1 100 0 4 1735 338 155 325 8 chr3 150789072 150789189 -8810594 - Lx2 LINE L1 -1 6996 6843 4 1735 532 357 58 40 chr3 150790784 150791058 -8808725 + B4A SINE B4 2 280 -12 4 1735 261 0 0 0 chr3 150791146 150791175 -8808608 + (CATA)n Simple_repeat Simple_repeat 1 29 0 4 1735 523 355 93 8 chr3 150791690 150791838 -8807945 + MTEb LTR MaLR 1 161 -218 4 1735 1436 114 0 5 chr3 150791838 150792059 -8807724 + Lx LINE L1 6431 6650 -4 4 1735 523 303 376 5 chr3 150792059 150792216 -8807567 + MTEb LTR MaLR 162 377 -2 4 1735 22 35 0 0 chr3 150794659 150794688 -8805095 + AT_rich Low_complexity Low_complexity 1 29 0 4 1735 483 92 23 11 chr3 150796328 150796416 -8803367 + (TA)n Simple_repeat Simple_repeat 1 89 0 4 1735 1881 82 11 4 chr3 150799559 150799829 -8799954 - L1_Mus3 LINE L1 -2 6636 6365 4 1735 1077 79 0 0 chr3 150799829 150799969 -8799814 + L1_Mus3 LINE L1 6136 6275 -363 4 1735 833 107 0 8 chr3 150800305 150800437 -8799346 + (GGAA)n Simple_repeat Simple_repeat 2 132 0 4 1735 226 364 175 0 chr3 150800459 150800602 -8799181 + MLT1J-int LTR MaLR 94 261 -1126 4 1735 216 250 17 0 chr3 150801217 150801277 -8798506 + (TG)n Simple_repeat Simple_repeat 1 61 0 4 1735 1316 289 36 30 chr3 150801354 150801793 -8797990 + Lx8 LINE L1 6239 6680 -793 4 1735 706 226 121 50 chr3 150802240 150802520 -8797263 + L1MA6 LINE L1 5688 5987 -313 4 1735 619 183 0 0 chr3 150802645 150802749 -8797034 + ORR1B2 LTR MaLR 5 108 -259 4 1735 744 184 163 23 chr3 150803187 150803359 -8796424 + ORR1B2 LTR MaLR 163 358 -9 4 1735 278 336 0 34 chr3 150803484 150803632 -8796151 + GA-rich Low_complexity Low_complexity 5 147 0 4 1735 2670 74 102 18 chr3 150803678 150804078 -8795705 - L1_Mus3 LINE L1 -7 6631 6198 4 1735 611 299 41 21 chr3 150804081 150804371 -8795412 - L1_Mur3 LINE L1 -478 5402 5107 4 1735 21 36 0 0 chr3 150804568 150804596 -8795187 + AT_rich Low_complexity Low_complexity 1 28 0 4 1735 970 174 20 19 chr3 150804596 150804792 -8794991 - B2_Mm2 SINE B2 -1 215 13 4 1735 1921 236 68 34 chr3 150804793 150805349 -8794434 + Lx2B LINE L1 6424 6998 -2 4 1735 279 0 0 0 chr3 150805650 150805681 -8794102 + (CA)n Simple_repeat Simple_repeat 2 32 0 4 1735 34 55 0 0 chr3 150805935 150805990 -8793793 + AT_rich Low_complexity Low_complexity 1 55 0 4 1735 534 16 0 0 chr3 150807135 150807198 -8792585 + (GA)n Simple_repeat Simple_repeat 1 63 0 4 1735 654 133 13 7 chr3 150807413 150807564 -8792219 + CT-rich Low_complexity Low_complexity 1 152 0 4 1735 2042 212 79 2 chr3 150807702 150808122 -8791661 + RMER4A LTR ERVK 6 457 -9 4 1735 240 339 46 0 chr3 150808250 150808338 -8791445 + B1F1 SINE Alu 1 92 -28 4 1735 2644 226 71 27 chr3 150808615 150808744 -8791039 - RMER1B Other Other 0 1066 938 4 1735 261 0 0 0 chr3 150808744 150808773 -8791010 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 4 1735 2644 226 71 27 chr3 150808773 150809319 -8790464 - RMER1B Other Other -129 937 361 4 1735 450 0 0 0 chr3 150809319 150809369 -8790414 + (TC)n Simple_repeat Simple_repeat 2 51 0 4 1735 375 225 125 9 chr3 150809900 150810012 -8789771 + MLT1L LTR MaLR 144 268 -342 4 1735 229 229 0 0 chr3 150810960 150811008 -8788775 + A-rich Low_complexity Low_complexity 1 48 0 4 1735 1128 55 0 20 chr3 150812382 150812530 -8787253 + B1_Mus1 SINE Alu 2 146 -2 4 1735 862 229 53 19 chr3 150812807 150813016 -8786767 + B3 SINE B2 1 216 0 4 1735 2757 63 0 0 chr3 150813365 150813716 -8786067 + L1Md_A LINE L1 6231 6581 -1 4 1735 29 28 0 0 chr3 150814867 150814903 -8784880 + AT_rich Low_complexity Low_complexity 1 36 0 4 1735 225 327 19 19 chr3 150816257 150816360 -8783423 + (CATA)n Simple_repeat Simple_repeat 4 106 0 4 1735 447 324 73 39 chr3 150817053 150817339 -8782444 - Lx8 LINE L1 -9 7464 7169 4 1735 1125 157 0 0 chr3 150817362 150817553 -8782230 + L1_Mur2 LINE L1 5000 5190 -687 4 1735 279 0 0 0 chr3 150817554 150817585 -8782198 + (TG)n Simple_repeat Simple_repeat 1 31 0 4 1735 225 0 0 0 chr3 150817611 150817636 -8782147 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 4 1735 5285 100 37 21 chr3 150817639 150818456 -8781327 + Lx LINE L1 5825 6654 0 4 1735 2617 166 22 9 chr3 150818494 150818955 -8780828 - Lx LINE L1 -7 6647 6181 4 1735 21 0 0 0 chr3 150820838 150820859 -8778924 + AT_rich Low_complexity Low_complexity 1 21 0 4 1735 268 324 89 76 chr3 150820973 150821130 -8778653 - B4A SINE B4 -133 159 1 4 1735 255 214 89 0 chr3 150821315 150821371 -8778412 + MTEa LTR MaLR 4 64 -315 4 1735 1128 75 0 0 chr3 150821429 150821576 -8778207 + B1_Mm SINE Alu 1 147 0 4 1735 207 0 0 0 chr3 150821576 150821599 -8778184 + (A)n Simple_repeat Simple_repeat 1 23 0 4 1735 613 244 126 53 chr3 150821599 150821789 -8777994 + MTEa LTR MaLR 163 366 -13 4 1735 22 35 0 0 chr3 150821946 150821975 -8777808 + AT_rich Low_complexity Low_complexity 1 29 0 4 1735 367 274 114 63 chr3 150822962 150823137 -8776646 + Tigger1 DNA MER2_type 2232 2415 -3 4 1735 513 304 69 21 chr3 150823384 150823572 -8776211 - Tigger7 DNA MER2_type -113 2378 2182 4 1735 875 302 77 0 chr3 150823624 150823872 -8775911 - Tigger7 DNA MER2_type -2224 267 1 4 1735 470 304 180 4 chr3 150824126 150824370 -8775413 + B4A SINE B4 1 287 -5 4 1735 218 333 0 0 chr3 150825507 150825579 -8774204 + (CATATA)n Simple_repeat Simple_repeat 1 72 0 4 1735 236 288 7 0 chr3 150825580 150825726 -8774057 + (CA)n Simple_repeat Simple_repeat 2 148 0 4 1735 279 371 16 0 chr3 150825738 150825862 -8773921 + (CATATA)n Simple_repeat Simple_repeat 6 131 0 4 1735 270 95 0 0 chr3 150825862 150825904 -8773879 + (CA)n Simple_repeat Simple_repeat 2 43 0 4 1735 471 262 55 34 chr3 150825992 150826138 -8773645 - B1F SINE Alu 0 149 1 4 1735 769 180 49 6 chr3 150826409 150826571 -8773212 - RMER19B LTR ERVK 0 902 734 5 1735 1167 65 0 0 chr3 150826571 150826724 -8773059 + (GGAGA)n Simple_repeat Simple_repeat 2 154 0 5 1735 575 329 8 39 chr3 150827383 150827617 -8772166 - Lx8 LINE L1 -443 7030 6804 5 1735 246 160 0 0 chr3 150827775 150827825 -8771958 + (TG)n Simple_repeat Simple_repeat 2 51 0 5 1735 32 67 0 0 chr3 150829048 150829108 -8770675 + AT_rich Low_complexity Low_complexity 1 60 0 5 1735 351 0 0 0 chr3 150829132 150829171 -8770612 + (TG)n Simple_repeat Simple_repeat 2 40 0 5 1735 494 261 122 28 chr3 150829746 150829927 -8769856 - B3A SINE B2 0 198 1 5 1735 260 328 94 23 chr3 150830171 150830299 -8769484 + MLT1A0 LTR MaLR 218 354 -11 5 1735 253 303 58 94 chr3 150830806 150830977 -8768806 - MLT2D LTR ERVL -56 358 194 5 1735 273 57 0 0 chr3 150831096 150831131 -8768652 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 5 1735 32356 92 14 13 chr3 150831163 150837511 -8762272 - L1Md_F2 LINE L1 -2 6580 238 5 1735 227 217 83 0 chr3 150837547 150837607 -8762176 - Lx5 LINE L1 -802 6248 6184 5 1735 291 105 93 0 chr3 150837860 150837946 -8761837 + (TCTA)n Simple_repeat Simple_repeat 4 97 0 5 1735 349 274 12 0 chr3 150838605 150838689 -8761094 + B2_Mm2 SINE B2 1 85 -110 5 1735 219 324 137 51 chr3 150838689 150838722 -8761061 + B4 SINE B4 1 127 -165 5 1735 423 0 0 0 chr3 150838764 150838811 -8760972 + (TG)n Simple_repeat Simple_repeat 2 48 0 5 1735 482 322 16 75 chr3 150841926 150842142 -8757641 + B3A SINE B2 13 215 -1 5 1735 307 211 0 22 chr3 150842713 150842805 -8756978 + GA-rich Low_complexity Low_complexity 2 91 0 5 1735 1259 191 4 4 chr3 150843100 150843326 -8756457 + URR1A DNA MER1_type 1 226 0 5 1735 182 132 24 73 chr3 150843577 150843618 -8756165 + L3 LINE CR1 2151 2189 -2300 5 1735 440 346 10 108 chr3 150843698 150844003 -8755780 - B4A SINE B4 -16 276 2 5 1735 383 92 0 15 chr3 150844266 150844332 -8755451 + (TTTTA)n Simple_repeat Simple_repeat 1 65 0 5 1735 1012 110 0 27 chr3 150844332 150844482 -8755301 - B1_Mus1 SINE Alu 0 148 3 5 1735 285 293 62 14 chr3 150846276 150846484 -8753299 - L1MA7 LINE L1 -6 6285 6068 5 1735 1180 142 30 34 chr3 150847890 150848123 -8751660 + Lx LINE L1 6422 6653 -1 5 1735 189 382 15 30 chr3 150848908 150849043 -8750740 - MIR3 SINE MIR -64 144 12 5 1735 281 338 25 0 chr3 150849117 150849197 -8750586 + MER2 DNA MER2_type 1 82 -263 5 1735 954 221 14 9 chr3 150849655 150849874 -8749909 + URR1B DNA MER1_type 5 224 -1 5 1735 184 326 0 0 chr3 150850424 150850470 -8749313 - L2a LINE L2 -286 3140 3095 5 1735 354 355 95 42 chr3 150850793 150851329 -8748454 + L2c LINE L2 2765 3336 -51 5 1735 22 70 0 0 chr3 150851372 150851415 -8748368 + AT_rich Low_complexity Low_complexity 1 43 0 5 1735 21 0 0 0 chr3 150851989 150852010 -8747773 + AT_rich Low_complexity Low_complexity 1 21 0 5 1735 375 318 109 0 chr3 150852210 150852320 -8747463 + RSINE1 SINE B4 12 133 -32 5 1735 597 40 0 0 chr3 150852332 150852408 -8747375 + (TC)n Simple_repeat Simple_repeat 1 76 0 5 1735 300 279 71 29 chr3 150852549 150852689 -8747094 + L1MA6 LINE L1 5622 5767 -524 5 1735 2712 67 0 20 chr3 150852693 150853046 -8746737 + ORR1A1 LTR MaLR 1 346 0 5 1735 1791 180 65 5 chr3 150853125 150853493 -8746290 - ORR1B1 LTR MaLR -4 390 1 5 1735 426 322 48 11 chr3 150853517 150853705 -8746078 + L1MA6 LINE L1 5917 6111 -189 5 1735 328 321 29 29 chr3 150853757 150853895 -8745888 + B1F1 SINE Alu 10 147 -2 5 1735 198 0 0 0 chr3 150853990 150854012 -8745771 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 5 1735 221 283 32 11 chr3 150854132 150854225 -8745558 + (TATG)n Simple_repeat Simple_repeat 2 96 0 5 1735 405 70 0 0 chr3 150854225 150854282 -8745501 + (GA)n Simple_repeat Simple_repeat 2 58 0 5 1735 413 211 97 8 chr3 150854293 150854427 -8745356 - L1M2 LINE L1 -2660 3483 3338 5 1735 1368 245 66 20 chr3 150854456 150855069 -8744714 + L1MA9 LINE L1 5125 5769 -522 5 1735 954 293 19 103 chr3 150855080 150855457 -8744326 - ORR1E LTR MaLR -11 348 4 5 1735 261 309 249 23 chr3 150856013 150856354 -8743429 + L1MA9 LINE L1 5884 6301 -11 5 1735 416 317 63 55 chr3 150856400 150856767 -8743016 + L1ME2 LINE L1 5535 5904 -260 5 1735 3370 159 40 177 chr3 150856780 150857016 -8742767 - L1_Mur2 LINE L1 -191 5686 5456 5 1735 189 0 0 0 chr3 150857016 150857037 -8742746 + (TTTG)n Simple_repeat Simple_repeat 3 23 0 5 1735 956 169 44 0 chr3 150857039 150857199 -8742584 - B2_Mm2 SINE B2 -27 168 2 5 1735 3370 159 40 177 chr3 150857199 150857807 -8741976 - L1_Mur2 LINE L1 -422 5453 4818 5 1735 4850 230 21 4 chr3 150857796 150859032 -8740751 + Lx4B LINE L1 5690 6969 -31 5 1735 192 77 0 0 chr3 150859033 150859059 -8740724 + (TTAA)n Simple_repeat Simple_repeat 1 26 0 5 1735 537 121 0 0 chr3 150859552 150859635 -8740148 + (CA)n Simple_repeat Simple_repeat 2 84 0 5 1735 1599 102 16 8 chr3 150859817 150860064 -8739719 + L1_Mus3 LINE L1 6390 6638 0 5 1735 183 42 0 0 chr3 150860566 150860590 -8739193 + (A)n Simple_repeat Simple_repeat 1 24 0 5 1735 543 191 9 9 chr3 150861616 150861732 -8738051 + Lx3C LINE L1 6072 6187 -789 5 1735 630 253 181 0 chr3 150861771 150861953 -8737830 + B3 SINE B2 2 216 0 5 1735 647 291 98 87 chr3 150861982 150862340 -8737443 - MTEa LTR MaLR -17 362 1 5 1735 449 275 47 57 chr3 150862540 150862733 -8737050 - LTR81A LTR ERV1? -984 366 176 5 1735 1265 160 9 5 chr3 150863618 150863838 -8735945 + URR1B DNA MER1_type 4 224 -1 5 1736 376 263 7 169 chr3 150864192 150864334 -8735449 + MTEb LTR MaLR 207 325 -54 5 1736 2103 91 20 0 chr3 150864360 150864658 -8735125 - Lx2 LINE L1 -5 6992 6689 5 1736 2465 112 52 3 chr3 150864660 150865027 -8734756 + Lx2 LINE L1 6260 6644 -353 5 1736 361 222 33 11 chr3 150865027 150865118 -8734665 + MTEb LTR MaLR 287 379 0 5 1736 211 281 65 47 chr3 150865653 150865749 -8734034 - MIRc SINE MIR -28 180 90 5 1736 228 333 0 0 chr3 150866635 150866704 -8733079 + PB1D10 SINE Alu 28 96 -21 5 1736 547 363 43 88 chr3 150866796 150867101 -8732682 + B4A SINE B4 2 292 0 5 1736 228 100 0 0 chr3 150867127 150867167 -8732616 + (GA)n Simple_repeat Simple_repeat 1 40 0 5 1736 342 0 0 0 chr3 150867280 150867318 -8732465 + (TG)n Simple_repeat Simple_repeat 2 39 0 5 1736 3220 105 11 19 chr3 150867625 150867646 -8732137 - Lx3A LINE L1 0 6981 6967 5 1736 183 42 0 0 chr3 150867646 150867670 -8732113 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 5 1736 3220 105 11 19 chr3 150867670 150868125 -8731658 - Lx3A LINE L1 -15 6966 6509 5 1736 266 125 21 0 chr3 150868787 150868835 -8730948 + (TA)n Simple_repeat Simple_repeat 2 50 0 5 1736 29 0 0 0 chr3 150868895 150868924 -8730859 + AT_rich Low_complexity Low_complexity 1 29 0 5 1736 182 37 37 0 chr3 150868927 150868954 -8730829 + (TG)n Simple_repeat Simple_repeat 2 29 0 5 1736 2946 67 23 10 chr3 150869281 150869672 -8730111 + MTB LTR MaLR 1 396 0 5 1736 7523 61 30 72 chr3 150869672 150870818 -8728965 + MTB-int LTR MaLR 1 1098 0 5 1736 3034 64 26 0 chr3 150870820 150871208 -8728575 + MTB LTR MaLR 3 400 0 5 1736 21 0 0 0 chr3 150871674 150871695 -8728088 + AT_rich Low_complexity Low_complexity 1 21 0 5 1736 346 286 0 16 chr3 150871871 150871973 -8727810 - ORR1E LTR MaLR -267 103 8 5 1736 270 0 0 0 chr3 150872007 150872037 -8727746 + (CA)n Simple_repeat Simple_repeat 2 31 0 5 1736 694 184 6 22 chr3 150872573 150872756 -8727027 + CT-rich Low_complexity Low_complexity 1 180 0 5 1736 445 262 172 0 chr3 150873352 150873497 -8726286 + ORR1D2 LTR MaLR 1 170 -200 5 1736 282 125 0 0 chr3 150874290 150874338 -8725445 + (CA)n Simple_repeat Simple_repeat 1 48 0 5 1736 569 364 9 135 chr3 150874553 150874896 -8724887 - MLT1C LTR MaLR -6 384 84 5 1736 1186 61 0 0 chr3 150875357 150875504 -8724279 + B1_Mus1 SINE Alu 1 147 -1 5 1736 284 19 18 54 chr3 150875507 150875563 -8724220 + (CAAAA)n Simple_repeat Simple_repeat 2 55 0 5 1736 216 170 0 36 chr3 150875589 150875644 -8724139 + A-rich Low_complexity Low_complexity 2 54 0 5 1736 1326 265 27 35 chr3 150875841 150876213 -8723570 + ORR1D1 LTR MaLR 6 374 0 5 1736 1115 258 65 16 chr3 150876334 150876657 -8723126 + MTD LTR MaLR 81 419 0 5 1736 449 314 150 28 chr3 150876888 150877101 -8722682 - LTR50 LTR ERVL -554 241 3 5 1736 1270 290 59 0 chr3 150877625 150877949 -8721834 - MTE2b LTR MaLR -36 343 1 5 1736 24 32 0 0 chr3 150878097 150878128 -8721655 + AT_rich Low_complexity Low_complexity 1 31 0 5 1736 276 313 13 33 chr3 150878158 150878310 -8721473 + ALINE LINE RTE 180 328 -289 5 1736 305 277 104 30 chr3 150879217 150879351 -8720432 - MLT1A LTR MaLR -125 249 106 5 1736 180 0 0 0 chr3 150879753 150879773 -8720010 + (CTGTG)n Simple_repeat Simple_repeat 2 21 0 5 1736 708 391 47 30 chr3 150879812 150880318 -8719465 + L4 LINE RTE 395 909 -1120 5 1736 471 18 0 0 chr3 150880328 150880384 -8719399 + (TG)n Simple_repeat Simple_repeat 1 56 0 5 1736 221 288 0 0 chr3 150880826 150880885 -8718898 + (CA)n Simple_repeat Simple_repeat 2 60 0 5 1736 216 0 0 0 chr3 150880947 150880971 -8718812 + (TG)n Simple_repeat Simple_repeat 1 24 0 5 1736 1052 60 20 0 chr3 150882921 150883072 -8716711 - L1Md_F3 LINE L1 -14 6570 6417 5 1736 794 55 0 9 chr3 150884550 150884659 -8715124 + (TTC)n Simple_repeat Simple_repeat 1 108 0 5 1736 32 0 0 0 chr3 150887283 150887315 -8712468 + AT_rich Low_complexity Low_complexity 1 32 0 5 1736 1656 94 8 0 chr3 150888231 150888465 -8711318 - L1_Mus4 LINE L1 -601 6035 5800 5 1736 1579 105 33 4 chr3 150888465 150888705 -8711078 + L1_Mus4 LINE L1 6382 6628 -8 5 1736 228 67 0 0 chr3 150892178 150892208 -8707575 + (TTGG)n Simple_repeat Simple_repeat 2 31 0 5 1736 349 336 70 25 chr3 150893017 150893414 -8706369 - L1MA6 LINE L1 -63 6237 5823 5 1736 234 324 9 9 chr3 150893638 150893747 -8706036 + (TA)n Simple_repeat Simple_repeat 1 109 0 6 1736 309 143 0 0 chr3 150896378 150896427 -8703356 + Lx LINE L1 4503 4551 -1335 6 1736 2580 28 2 263 chr3 150896427 150896955 -8702828 + RLTR10 LTR ERVK 1 390 0 6 1736 17162 28 1 1 chr3 150896955 150898940 -8700843 + RLTR10-int LTR ERVK 1 1984 -3 6 1736 2600 23 2 265 chr3 150898942 150899471 -8700312 + RLTR10 LTR ERVK 1 390 0 6 1736 7205 136 39 9 chr3 150899471 150901521 -8698262 + Lx LINE L1 4543 6646 -8 6 1736 221 141 69 23 chr3 150901596 150901683 -8698100 + (TA)n Simple_repeat Simple_repeat 1 91 0 6 1736 2752 210 31 26 chr3 150901684 150902265 -8697518 - Lx5 LINE L1 -6 7044 6461 6 1736 558 0 0 0 chr3 150902479 150902541 -8697242 + (TA)n Simple_repeat Simple_repeat 2 63 0 6 1736 250 141 46 23 chr3 150902588 150902675 -8697108 + (TCTA)n Simple_repeat Simple_repeat 1 89 0 6 1736 422 92 26 0 chr3 150902877 150902953 -8696830 + (TAGA)n Simple_repeat Simple_repeat 1 78 0 6 1736 2531 216 12 4 chr3 150903498 150904001 -8695782 + Lx4A LINE L1 644 1150 -5936 6 1736 2378 30 23 10 chr3 150904006 150904311 -8695472 - L1Md_F3 LINE L1 -1 6583 6275 6 1736 2540 30 0 0 chr3 150904311 150904614 -8695169 + L1Md_F3 LINE L1 5620 5922 -662 6 1736 10932 139 29 26 chr3 150904608 150905151 -8694632 + Lx4A LINE L1 1137 1684 -4193 6 1736 837 117 0 0 chr3 150905151 150905279 -8694504 + (GGAA)n Simple_repeat Simple_repeat 4 131 0 6 1736 10932 165 30 63 chr3 150905279 150907846 -8691937 + Lx4A LINE L1 1685 3995 -1885 6 1736 7488 151 17 98 chr3 150907848 150909008 -8690775 + RLTR21 LTR ERVK 1 1116 -456 6 1736 189 0 0 0 chr3 150909008 150909029 -8690754 + (TATATG)n Simple_repeat Simple_repeat 2 22 0 6 1736 7488 151 17 98 chr3 150909029 150909389 -8690394 + RLTR21 LTR ERVK 1117 1398 -174 6 1736 1897 227 97 75 chr3 150909384 150910046 -8689737 - RMER17B LTR ERVK -282 676 1 6 1736 1651 189 12 218 chr3 150910047 150910635 -8689148 + RMER19C LTR ERVK 145 611 0 6 1736 3536 152 5 5 chr3 150910639 150911241 -8688542 + Lx4A LINE L1 4955 5556 -321 6 1736 340 87 43 0 chr3 150911241 150911310 -8688473 + (TTTTG)n Simple_repeat Simple_repeat 2 73 0 6 1736 7267 189 28 24 chr3 150911377 150912832 -8686951 + Lx4A LINE L1 5587 7047 -11 6 1736 674 24 12 0 chr3 150912860 150912944 -8686839 + (GA)n Simple_repeat Simple_repeat 2 86 0 6 1736 332 280 78 58 chr3 150912945 150913150 -8686633 + L1M4 LINE L1 5195 5403 -743 6 1736 1766 312 58 14 chr3 150913223 150913936 -8685847 + Lx7 LINE L1 5971 6714 -982 6 1736 202 213 0 85 chr3 150913967 150914049 -8685734 + T-rich Low_complexity Low_complexity 3 77 0 6 1736 246 105 0 0 chr3 150914054 150914092 -8685691 + (TTG)n Simple_repeat Simple_repeat 2 39 0 6 1736 387 0 0 0 chr3 150914300 150914343 -8685440 + (CA)n Simple_repeat Simple_repeat 2 44 0 6 1736 232 288 12 24 chr3 150914622 150914704 -8685079 - B4 SINE B4 -205 87 7 6 1736 397 320 134 36 chr3 150915141 150915498 -8684285 - L1M5 LINE L1 -1686 4460 4069 6 1736 344 310 67 47 chr3 150915812 150916171 -8683612 - L1M5 LINE L1 -2123 4023 3658 6 1736 493 367 55 60 chr3 150916181 150916566 -8683217 + MER77 LTR ERVL 3 385 -222 6 1736 480 99 0 0 chr3 150916776 150916847 -8682936 + (TC)n Simple_repeat Simple_repeat 1 71 0 6 1736 180 0 0 0 chr3 150916847 150916867 -8682916 + (TG)n Simple_repeat Simple_repeat 1 20 0 6 1736 360 43 0 0 chr3 150917482 150917528 -8682255 + (TTG)n Simple_repeat Simple_repeat 2 47 0 6 1736 345 266 23 53 chr3 150917528 150917659 -8682124 - L1MC LINE L1 -2898 3248 3122 6 1736 2299 76 91 26 chr3 150918072 150918424 -8681359 - L1_Mus3 LINE L1 -585 5981 5607 6 1736 4276 107 20 26 chr3 150918424 150919079 -8680704 + L1_Mus3 LINE L1 5988 6638 0 6 1736 350 208 0 0 chr3 150919709 150919781 -8680002 + Lx9 LINE L1 6937 7008 -636 6 1736 828 229 9 28 chr3 150919784 150919995 -8679788 - MTD LTR MaLR -210 209 3 6 1736 269 0 0 53 chr3 150922761 150922799 -8676984 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 6 1736 1740 259 72 88 chr3 150925783 150926600 -8673183 + RCHARR1 DNA MER1_type 3 806 -168 6 1736 291 258 0 0 chr3 150926603 150926669 -8673114 + B3A SINE B2 3 68 -130 6 1736 343 364 6 4 chr3 150926715 150926859 -8672924 + B3A SINE B2 41 185 -31 6 1736 249 108 0 0 chr3 150926860 150926897 -8672886 + (CA)n Simple_repeat Simple_repeat 1 37 0 6 1736 667 240 11 58 chr3 150926898 150927088 -8672695 + RCHARR1 DNA MER1_type 794 974 0 6 1736 414 233 11 23 chr3 150927753 150927841 -8671942 + B4 SINE B4 10 96 -196 6 1736 406 315 7 27 chr3 150927841 150927991 -8671792 + RSINE1 SINE B4 2 148 -17 6 1736 518 306 43 77 chr3 150928005 150928239 -8671544 + B4 SINE B4 67 292 0 6 1736 311 338 36 42 chr3 150928432 150928766 -8671017 - L1MC3 LINE L1 -697 7088 6757 6 1736 368 273 8 68 chr3 150928768 150928886 -8670897 - B3A SINE B2 -78 120 10 6 1736 306 0 0 0 chr3 150928905 150928939 -8670844 + (CAAAAA)n Simple_repeat Simple_repeat 2 35 0 6 1736 510 315 75 19 chr3 150929598 150929780 -8670003 + B4A SINE B4 10 201 -91 6 1736 484 307 0 22 chr3 150929845 150930025 -8669758 + (CA)n Simple_repeat Simple_repeat 2 177 0 6 1736 770 107 16 0 chr3 150930467 150930589 -8669194 + URR1B DNA MER1_type 102 225 0 6 1736 965 118 58 6 chr3 150931519 150931690 -8668093 - Lx3A LINE L1 -23 6958 6779 6 1736 1360 223 64 153 chr3 150931693 150932044 -8667739 - RLTR12A LTR ERVK -10 558 246 6 1736 1321 50 0 22 chr3 150932044 150932228 -8667555 + (TCCCC)n Simple_repeat Simple_repeat 1 180 0 6 1736 1360 172 130 13 chr3 150932228 150932500 -8667283 - RLTR12A LTR ERVK -262 306 2 6 1736 338 337 81 23 chr3 150932615 150932788 -8666995 + B3A SINE B2 1 183 -15 6 1736 24 0 0 0 chr3 150932939 150932963 -8666820 + AT_rich Low_complexity Low_complexity 1 24 0 6 1736 33 56 0 0 chr3 150933067 150933121 -8666662 + AT_rich Low_complexity Low_complexity 1 54 0 6 1736 467 160 11 0 chr3 150933151 150933245 -8666538 + (TA)n Simple_repeat Simple_repeat 2 96 0 6 1736 719 202 40 0 chr3 150933245 150933369 -8666414 + B3 SINE B2 2 130 -86 6 1736 237 185 0 0 chr3 150934033 150934098 -8665685 + (TA)n Simple_repeat Simple_repeat 2 66 0 6 1736 204 349 120 42 chr3 150934624 150934908 -8664875 + L2c LINE L2 3080 3385 -2 6 1736 3072 146 51 13 chr3 150935100 150935626 -8664157 + Lx4A LINE L1 6513 7058 0 6 1736 240 86 0 0 chr3 150936561 150936596 -8663187 + (GGGA)n Simple_repeat Simple_repeat 4 38 0 6 1736 29 0 0 0 chr3 150936864 150936893 -8662890 + AT_rich Low_complexity Low_complexity 1 29 0 6 1736 25 0 0 0 chr3 150937324 150937349 -8662434 + AT_rich Low_complexity Low_complexity 1 25 0 6 1736 661 273 17 11 chr3 150937534 150937708 -8662075 - Lx9 LINE L1 -677 6967 6793 6 1736 530 385 35 14 chr3 150937711 150938146 -8661637 + Lx9 LINE L1 6998 7441 -203 6 1736 470 263 101 48 chr3 150938215 150938423 -8661360 + Lx9 LINE L1 7198 7416 -228 6 1736 267 225 0 29 chr3 150938621 150938726 -8661057 + (TATG)n Simple_repeat Simple_repeat 1 102 0 6 1736 258 176 0 0 chr3 150939963 150940014 -8659769 + (CA)n Simple_repeat Simple_repeat 1 51 0 6 1736 363 73 0 0 chr3 150940469 150940524 -8659259 + (TC)n Simple_repeat Simple_repeat 2 56 0 6 1736 224 159 0 43 chr3 150940929 150940975 -8658808 + GA-rich Low_complexity Low_complexity 4 47 0 6 1736 616 308 10 61 chr3 150940992 150941189 -8658594 + B3A SINE B2 10 196 -2 6 1736 423 336 8 0 chr3 150941207 150941329 -8658454 + RSINE1 SINE B4 12 134 -31 6 1736 22 0 0 0 chr3 150941392 150941414 -8658369 + AT_rich Low_complexity Low_complexity 1 22 0 6 1736 765 33 0 0 chr3 150942461 150942553 -8657230 + (TG)n Simple_repeat Simple_repeat 2 93 0 6 1736 253 321 18 9 chr3 150943001 150943111 -8656672 + MER58B DNA MER1_type 228 338 -3 6 1736 517 306 24 72 chr3 150943448 150943656 -8656127 + RMER15 LTR ERVL 363 560 -15 6 1736 262 253 80 0 chr3 150944072 150944147 -8655636 + PB1D9 SINE Alu 37 117 -3 6 1736 312 345 51 17 chr3 150945103 150945280 -8654503 + L1M5 LINE L1 2645 2827 -3319 6 1736 30 0 0 0 chr3 150945282 150945312 -8654471 + AT_rich Low_complexity Low_complexity 1 30 0 6 1736 1505 309 94 60 chr3 150945348 150946005 -8653778 - Lx8 LINE L1 -3 7470 6819 6 1736 810 98 0 0 chr3 150946005 150946127 -8653656 + (TA)n Simple_repeat Simple_repeat 2 123 0 6 1736 1505 309 94 60 chr3 150946127 150946324 -8653459 - Lx8 LINE L1 -655 6818 6588 6 1736 229 260 14 0 chr3 150946456 150946529 -8653254 - Lx7 LINE L1 -268 7428 7355 6 1736 692 264 0 6 chr3 150946582 150946750 -8653033 - Lx7 LINE L1 -350 7346 7180 6 1736 3886 223 72 40 chr3 150946749 150948030 -8651753 + Lx7 LINE L1 5325 6631 -1065 6 1736 527 318 62 41 chr3 150948079 150948518 -8651265 - L1_Mur3 LINE L1 -495 5385 4938 6 1736 5431 93 67 51 chr3 150949599 150950387 -8649396 + RLTR13B1 LTR ERVK 1 842 -51 6 1736 1238 47 53 0 chr3 150950387 150950557 -8649226 + L1Md_F3 LINE L1 6391 6569 -15 6 1736 261 0 0 0 chr3 150950564 150950593 -8649190 + (TAAAA)n Simple_repeat Simple_repeat 4 32 0 6 1736 5431 93 67 51 chr3 150950593 150950675 -8649108 + RLTR13B1 LTR ERVK 843 893 0 6 1736 967 142 11 0 chr3 150950698 150950874 -8648909 + GA-rich Low_complexity Low_complexity 3 180 0 6 1736 237 33 0 0 chr3 150950872 150950902 -8648881 + (CAA)n Simple_repeat Simple_repeat 2 31 0 6 1736 212 211 0 19 chr3 150951137 150951190 -8648593 + T-rich Low_complexity Low_complexity 1 52 0 6 1736 462 36 0 0 chr3 150951215 150951271 -8648512 + (TC)n Simple_repeat Simple_repeat 1 56 0 6 1736 432 316 56 10 chr3 150951723 150951918 -8647865 + B3 SINE B2 1 204 -12 6 1736 21 0 0 0 chr3 150952170 150952191 -8647592 + AT_rich Low_complexity Low_complexity 1 21 0 6 1736 210 71 0 0 chr3 150953285 150953313 -8646470 + (A)n Simple_repeat Simple_repeat 1 28 0 6 1736 2733 162 62 8 chr3 150953613 150954129 -8645654 - Lx2A1 LINE L1 -6 7002 6459 6 1736 300 83 0 0 chr3 150955523 150955571 -8644212 + (TG)n Simple_repeat Simple_repeat 1 48 0 6 1736 382 353 18 74 chr3 150960700 150960917 -8638866 - MTEa LTR MaLR -172 207 3 6 1736 306 0 0 0 chr3 150961298 150961332 -8638451 + (T)n Simple_repeat Simple_repeat 1 34 0 6 1736 25 0 0 0 chr3 150963546 150963571 -8636212 + AT_rich Low_complexity Low_complexity 1 25 0 6 1736 233 189 0 54 chr3 150963651 150963707 -8636076 + L1_Mur3 LINE L1 3653 3705 -2175 6 1736 398 302 50 31 chr3 150964393 150964653 -8635130 + L1M5 LINE L1 4488 4752 -1394 6 1736 25 31 0 0 chr3 150964853 150964885 -8634898 + AT_rich Low_complexity Low_complexity 1 32 0 6 1736 254 400 13 27 chr3 150965124 150965273 -8634510 - RSINE1 SINE B4 -16 149 3 6 1736 210 71 0 0 chr3 150965346 150965374 -8634409 + (T)n Simple_repeat Simple_repeat 1 28 0 7 1736 753 344 83 37 chr3 150966140 150966466 -8633317 - ORR1E LTR MaLR -18 341 1 7 1736 8002 35 16 7 chr3 150966655 150968021 -8631762 - L1Md_F3 LINE L1 0 6584 5206 7 1736 456 264 0 0 chr3 150968079 150968253 -8631530 + (CA)n Simple_repeat Simple_repeat 1 174 0 7 1736 304 374 0 25 chr3 150968654 150968772 -8631011 + PB1D10 SINE Alu 1 115 -2 7 1736 21 57 0 0 chr3 150969651 150969686 -8630097 + AT_rich Low_complexity Low_complexity 1 35 0 7 1736 372 211 358 0 chr3 150970181 150970290 -8629493 - B1_Mur2 SINE Alu 0 149 2 7 1736 378 0 0 0 chr3 150970732 150970774 -8629009 + (CA)n Simple_repeat Simple_repeat 2 43 0 7 1736 213 39 0 0 chr3 150971370 150971396 -8628387 + (CTTTG)n Simple_repeat Simple_repeat 5 30 0 7 1736 503 16 0 15 chr3 150972246 150972311 -8627472 + (TTTTG)n Simple_repeat Simple_repeat 2 65 0 7 1736 1071 66 0 0 chr3 150972311 150972447 -8627336 - B1_Mus2 SINE Alu -10 137 2 7 1736 306 292 54 83 chr3 150973013 150973181 -8626602 - MLT1L LTR MaLR -305 305 143 7 1736 322 306 66 61 chr3 150974138 150974319 -8625464 - MLT1E LTR MaLR -25 628 447 7 1736 203 322 114 38 chr3 150975666 150975824 -8623959 - L2 LINE L2 -1363 2056 1887 7 1736 5516 43 9 0 chr3 150976062 150976739 -8623044 + L1Md_F2 LINE L1 5900 6582 0 7 1736 21 0 0 0 chr3 150976804 150976825 -8622958 + AT_rich Low_complexity Low_complexity 1 21 0 7 1736 303 281 32 18 chr3 150977399 150977511 -8622272 + B1F2 SINE Alu 23 140 -9 7 1736 27 49 0 0 chr3 150977551 150977592 -8622191 + AT_rich Low_complexity Low_complexity 1 41 0 7 1736 486 0 0 0 chr3 150978148 150978202 -8621581 + (TG)n Simple_repeat Simple_repeat 2 55 0 7 1736 414 0 0 0 chr3 150979960 150980006 -8619777 + (CA)n Simple_repeat Simple_repeat 1 46 0 7 1736 1450 122 13 0 chr3 150980501 150980731 -8619052 - Lx2 LINE L1 0 6997 6765 7 1736 987 109 0 26 chr3 150980732 150980883 -8618900 - Lx2 LINE L1 -364 6633 6487 7 1736 532 298 10 77 chr3 150980883 150981079 -8618704 - B3 SINE B2 -30 186 4 7 1736 820 347 31 44 chr3 150981085 150981482 -8618301 + MTE2a LTR MaLR 17 419 0 7 1736 3539 41 7 16 chr3 150981934 150982381 -8617402 + L1Md_F3 LINE L1 6128 6570 -14 7 1736 30 69 0 0 chr3 150987397 150987455 -8612328 + AT_rich Low_complexity Low_complexity 1 58 0 7 1736 21 0 0 0 chr3 150987507 150987528 -8612255 + AT_rich Low_complexity Low_complexity 1 21 0 7 1736 444 99 0 0 chr3 150987948 150988019 -8611764 + (TG)n Simple_repeat Simple_repeat 2 72 0 7 1736 24 32 0 0 chr3 150988069 150988100 -8611683 + AT_rich Low_complexity Low_complexity 1 31 0 7 1736 309 323 13 0 chr3 150988101 150988259 -8611524 + (CA)n Simple_repeat Simple_repeat 1 160 0 7 1736 329 316 11 17 chr3 150988342 150988516 -8611267 + (CA)n Simple_repeat Simple_repeat 2 174 0 7 1736 318 224 0 0 chr3 150988677 150988762 -8611021 + (CA)n Simple_repeat Simple_repeat 2 86 0 7 1736 903 104 1 55 chr3 150989732 150989901 -8609882 - Lx2A1 LINE L1 -301 6696 6532 7 1736 791 102 8 0 chr3 150989911 150990038 -8609745 + Lx2A1 LINE L1 6867 6994 -14 7 1736 207 100 0 0 chr3 150990268 150990298 -8609485 + (TA)n Simple_repeat Simple_repeat 2 31 0 7 1736 479 17 17 0 chr3 150990395 150990455 -8609328 + (TTA)n Simple_repeat Simple_repeat 3 63 0 7 1736 1156 313 39 2 chr3 150990456 150990872 -8608911 - Lx9 LINE L1 -171 7473 7043 7 1736 193 75 50 0 chr3 150990920 150990960 -8608823 + (TTTTTG)n Simple_repeat Simple_repeat 5 46 0 7 1736 267 103 0 0 chr3 150993118 150993157 -8606626 + (A)n Simple_repeat Simple_repeat 1 39 0 7 1736 2114 111 41 35 chr3 150993224 150993569 -8606214 - L1_Mus4 LINE L1 -7 6629 6283 7 1736 396 0 0 0 chr3 150993934 150993978 -8605805 + (TG)n Simple_repeat Simple_repeat 2 45 0 7 1737 189 0 0 0 chr3 150995170 150995191 -8604592 + (T)n Simple_repeat Simple_repeat 1 21 0 7 1737 21 0 0 0 chr3 150996164 150996185 -8603598 + AT_rich Low_complexity Low_complexity 1 21 0 7 1737 180 97 0 0 chr3 150996673 150996704 -8603079 + (TTGG)n Simple_repeat Simple_repeat 1 31 0 7 1737 697 301 17 38 chr3 150996975 150997213 -8602570 - MIRb SINE MIR -1 267 35 7 1737 405 39 0 0 chr3 150997868 150997919 -8601864 + (TG)n Simple_repeat Simple_repeat 1 51 0 7 1737 573 309 120 38 chr3 150997930 150998196 -8601587 - B4A SINE B4 0 292 5 7 1737 300 326 102 66 chr3 150998521 150998931 -8600852 - LTR78 LTR ERV1 -579 725 301 7 1737 1155 68 0 0 chr3 150999256 150999403 -8600380 - B1_Mm SINE Alu 0 147 1 7 1737 461 300 60 27 chr3 151000001 151000186 -8599597 - B3 SINE B2 -24 192 2 1 1737 186 363 55 24 chr3 151002392 151002519 -8597264 - MIRb SINE MIR -66 202 72 2 1737 589 307 82 38 chr3 151003007 151003325 -8596458 + L1M4 LINE L1 3512 3843 -2303 3 1737 650 253 14 0 chr3 151003547 151003693 -8596090 + Lx7 LINE L1 7139 7286 -410 4 1737 612 0 0 0 chr3 151003727 151003795 -8595988 + (GGAA)n Simple_repeat Simple_repeat 3 70 0 5 1737 242 148 53 53 chr3 151003795 151003852 -8595931 - L1_Mur2 LINE L1 -2901 2976 2920 6 1737 1387 174 28 7 chr3 151003838 151004121 -8595662 - L1_Mur2 LINE L1 -3244 2633 2345 6 1737 428 317 68 20 chr3 151005364 151005615 -8594168 + L1M4 LINE L1 4416 4678 -1468 3 1737 360 336 58 86 chr3 151005764 151006050 -8593733 + L1M4 LINE L1 4886 5158 -988 3 1737 1197 91 45 6 chr3 151006050 151006226 -8593557 + B2_Mm2 SINE B2 1 183 -12 7 1737 543 55 0 0 chr3 151006226 151006299 -8593484 + L1_Mus2 LINE L1 6494 6566 0 8 1737 360 336 58 86 chr3 151006299 151006497 -8593286 + L1M4 LINE L1 5159 5356 -790 3 1737 228 163 0 0 chr3 151007439 151007482 -8592301 + (TA)n Simple_repeat Simple_repeat 2 44 0 9 1737 345 198 0 0 chr3 151007484 151007565 -8592218 + (CA)n Simple_repeat Simple_repeat 2 82 0 1 1737 1853 155 3 13 chr3 151007609 151007923 -8591860 - RLTR10E LTR ERVK 0 311 1 1 1737 717 87 0 0 chr3 151008795 151008910 -8590873 + (TG)n Simple_repeat Simple_repeat 2 116 0 1 1737 599 328 40 0 chr3 151008910 151009084 -8590699 - B3 SINE B2 -30 186 6 1 1737 795 231 0 0 chr3 151009165 151009406 -8590377 + CT-rich Low_complexity Low_complexity 1 241 0 1 1737 324 111 0 0 chr3 151009181 151009226 -8590557 + (TCCC)n Simple_repeat Simple_repeat 2 46 0 1 1737 243 372 20 27 chr3 151009427 151009576 -8590207 - Lx8 LINE L1 -247 7226 7079 1 1737 810 31 0 0 chr3 151009580 151009677 -8590106 + (GA)n Simple_repeat Simple_repeat 2 98 0 1 1737 211 234 16 0 chr3 151009830 151009894 -8589889 + T-rich Low_complexity Low_complexity 6 70 0 1 1737 1630 282 83 18 chr3 151010325 151010938 -8588845 - Lx8 LINE L1 -2 7471 6819 1 1737 214 264 75 32 chr3 151012077 151012171 -8587612 + L2 LINE L2 2028 2125 -1294 2 1737 1126 88 0 0 chr3 151013914 151014061 -8585722 + B1_Mus2 SINE Alu 1 147 0 2 1737 217 250 0 0 chr3 151014620 151014676 -8585107 + T-rich Low_complexity Low_complexity 1 56 0 2 1737 455 268 42 35 chr3 151015227 151015370 -8584413 + B3A SINE B2 2 145 -53 2 1737 300 82 49 0 chr3 151015490 151015551 -8584232 + (TTG)n Simple_repeat Simple_repeat 2 65 0 2 1737 21 0 0 0 chr3 151016018 151016039 -8583744 + AT_rich Low_complexity Low_complexity 1 21 0 2 1737 342 0 0 0 chr3 151017087 151017125 -8582658 + (TTTTC)n Simple_repeat Simple_repeat 2 39 0 2 1737 4079 42 0 4 chr3 151017127 151017628 -8582155 - L1Md_F3 LINE L1 -10 6574 6076 2 1737 195 80 0 74 chr3 151017790 151017844 -8581939 + T-rich Low_complexity Low_complexity 6 55 0 2 1737 222 37 0 0 chr3 151019309 151019336 -8580447 + (GAAAA)n Simple_repeat Simple_repeat 2 28 0 2 1737 189 121 0 0 chr3 151019978 151020011 -8579772 + (T)n Simple_repeat Simple_repeat 1 33 0 3 1737 2357 318 30 12 chr3 151021836 151022641 -8577142 + Lx9 LINE L1 6358 7176 -468 3 1737 299 319 43 0 chr3 151023208 151023324 -8576459 - Lx9 LINE L1 -1197 6447 6327 3 1737 3084 68 8 0 chr3 151023505 151023902 -8575881 + MTB LTR MaLR 1 400 0 3 1737 191 125 25 0 chr3 151024062 151024102 -8575681 + (TTTTG)n Simple_repeat Simple_repeat 1 41 0 3 1737 925 122 7 7 chr3 151024102 151024242 -8575541 - B1_Mus1 SINE Alu 0 148 9 3 1737 327 329 55 49 chr3 151024392 151024555 -8575228 - MER45A DNA Tip100 -11 167 4 3 1737 198 233 31 122 chr3 151024654 151024752 -8575031 - L3 LINE CR1 -3 4486 4398 3 1737 429 285 81 63 chr3 151024764 151024985 -8574798 + L1M2 LINE L1 2334 2558 -4291 3 1737 649 298 32 24 chr3 151025160 151025500 -8574283 + L1M2 LINE L1 3334 3676 -3169 3 1737 1027 322 58 71 chr3 151025523 151026139 -8573644 + L1M2 LINE L1 4441 5083 -1762 3 1737 3153 155 72 92 chr3 151026139 151026891 -8572892 + RMER19A LTR ERVK 1 737 0 3 1737 1027 322 58 71 chr3 151026891 151027471 -8572312 + L1M2 LINE L1 5084 5621 -1224 3 1737 1208 48 0 0 chr3 151028091 151028238 -8571545 - B1_Mm SINE Alu 0 147 1 4 1737 277 253 23 57 chr3 151028250 151028338 -8571445 - B4 SINE B4 -207 85 1 4 1737 239 282 84 0 chr3 151028614 151028685 -8571098 - B4A SINE B4 -171 121 45 4 1737 219 88 0 0 chr3 151028693 151028727 -8571056 + (C)n Simple_repeat Simple_repeat 1 34 0 4 1737 180 0 0 0 chr3 151029672 151029692 -8570091 + (TTAA)n Simple_repeat Simple_repeat 4 23 0 4 1737 195 49 48 24 chr3 151030301 151030343 -8569440 + (TAGA)n Simple_repeat Simple_repeat 4 46 0 4 1737 237 65 0 0 chr3 151030711 151030742 -8569041 + (CA)n Simple_repeat Simple_repeat 2 32 0 4 1737 606 286 49 123 chr3 151030764 151030967 -8568816 - B3 SINE B2 -4 191 4 4 1737 381 22 0 0 chr3 151031169 151031215 -8568568 + (TG)n Simple_repeat Simple_repeat 2 47 0 4 1737 207 88 0 0 chr3 151031216 151031250 -8568533 + (GA)n Simple_repeat Simple_repeat 2 35 0 4 1737 492 93 0 0 chr3 151031275 151031350 -8568433 + (TG)n Simple_repeat Simple_repeat 2 76 0 5 1737 3276 40 2 5 chr3 151031596 151032002 -8567781 + L1Md_F2 LINE L1 6177 6581 -1 5 1737 256 293 127 54 chr3 151032348 151032608 -8567175 - B4 SINE B4 -11 281 3 5 1737 363 284 154 0 chr3 151033219 151033381 -8566402 - L1MB3 LINE L1 -181 6002 5816 5 1737 645 232 108 21 chr3 151034119 151034313 -8565470 + B3 SINE B2 1 211 -5 5 1737 451 335 127 58 chr3 151035946 151036567 -8563216 - MER20B DNA MER1_type -3 780 117 5 1737 354 356 60 71 chr3 151036697 151036963 -8562820 - MLT1A LTR MaLR -29 345 83 5 1737 244 127 56 0 chr3 151037434 151037505 -8562278 + (TCTG)n Simple_repeat Simple_repeat 4 78 0 5 1737 552 42 0 0 chr3 151037514 151037585 -8562198 + (TC)n Simple_repeat Simple_repeat 2 72 0 5 1737 498 17 0 0 chr3 151037585 151037643 -8562140 + (TG)n Simple_repeat Simple_repeat 2 60 0 5 1737 387 41 0 0 chr3 151037740 151037789 -8561994 + (TAGA)n Simple_repeat Simple_repeat 3 51 0 6 1737 257 296 169 39 chr3 151037908 151038038 -8561745 - MIR SINE MIR -98 164 18 6 1737 276 337 90 71 chr3 151039107 151039318 -8560465 - MLT1A1 LTR MaLR -193 215 1 6 1737 468 0 0 0 chr3 151039683 151039735 -8560048 + (TG)n Simple_repeat Simple_repeat 1 52 0 6 1737 274 346 82 32 chr3 151039737 151039895 -8559888 - B3 SINE B2 -50 166 1 6 1737 4454 115 3 3 chr3 151040056 151040726 -8559057 + L1_Mus3 LINE L1 5969 6638 0 6 1737 595 237 42 33 chr3 151040931 151041145 -8558638 - Lx7 LINE L1 0 7696 7481 6 1737 373 33 0 0 chr3 151041250 151041311 -8558472 - L1_Mus4 LINE L1 -2 6634 6574 6 1737 204 226 0 0 chr3 151041938 151041991 -8557792 + A-rich Low_complexity Low_complexity 1 53 0 6 1737 325 70 0 34 chr3 151042770 151042829 -8556954 + (CA)n Simple_repeat Simple_repeat 2 58 0 6 1737 22 35 0 0 chr3 151044859 151044888 -8554895 + AT_rich Low_complexity Low_complexity 1 29 0 7 1737 1138 286 161 2 chr3 151044966 151045369 -8554414 - Lx8 LINE L1 -797 6676 6210 7 1737 580 183 56 7 chr3 151048331 151048474 -8551309 + Lx3B LINE L1 6824 6973 0 7 1737 24 53 0 0 chr3 151048483 151048521 -8551262 + AT_rich Low_complexity Low_complexity 1 38 0 7 1737 500 87 43 0 chr3 151048722 151048814 -8550969 + (TAGA)n Simple_repeat Simple_repeat 4 99 0 7 1737 265 272 11 11 chr3 151050196 151050289 -8549494 + GA-rich Low_complexity Low_complexity 4 96 0 7 1737 322 333 65 0 chr3 151051196 151051304 -8548479 - PB1D10 SINE Alu -1 116 2 7 1737 227 220 20 0 chr3 151051683 151051733 -8548050 + T-rich Low_complexity Low_complexity 4 54 0 7 1737 26 30 0 0 chr3 151054616 151054649 -8545134 + AT_rich Low_complexity Low_complexity 1 33 0 7 1737 481 313 158 44 chr3 151054800 151055161 -8544622 - Lx8 LINE L1 0 7473 7072 7 1737 417 39 0 0 chr3 151055611 151055662 -8544121 + (TA)n Simple_repeat Simple_repeat 1 51 0 8 1737 546 286 6 12 chr3 151055785 151055951 -8543832 - L1ME2 LINE L1 -277 5887 5723 8 1737 445 319 32 54 chr3 151056342 151056620 -8543163 - B4A SINE B4 -18 274 3 8 1737 280 326 121 37 chr3 151056834 151057484 -8542299 - L1MDa LINE L1 -4133 2500 1778 8 1737 405 0 0 0 chr3 151057509 151057554 -8542229 + (TC)n Simple_repeat Simple_repeat 1 45 0 8 1737 450 0 0 0 chr3 151057554 151057604 -8542179 + (CA)n Simple_repeat Simple_repeat 1 50 0 8 1737 332 279 39 0 chr3 151057613 151057742 -8542041 - L1MDa LINE L1 -4976 1657 1524 8 1737 300 215 128 27 chr3 151057869 151058017 -8541766 - L1MDa LINE L1 -5197 1343 1181 8 1737 817 229 63 24 chr3 151058111 151058317 -8541466 - B3 SINE B2 0 216 3 8 1737 340 296 59 0 chr3 151059825 151059994 -8539789 + L1MC4a LINE L1 7688 7866 -16 8 1737 555 47 23 23 chr3 151060449 151060537 -8539246 + (TAGA)n Simple_repeat Simple_repeat 2 89 0 8 1737 341 304 88 9 chr3 151060666 151060779 -8539004 + B1_Mur1 SINE Alu 18 139 -10 8 1737 1107 76 0 20 chr3 151061527 151061666 -8538117 + B1_Mus1 SINE Alu 3 140 -8 9 1737 417 20 0 0 chr3 151061666 151061716 -8538067 + (CAAAA)n Simple_repeat Simple_repeat 5 54 0 9 1737 465 19 0 0 chr3 151062646 151062700 -8537083 + (CA)n Simple_repeat Simple_repeat 2 55 0 9 1737 303 28 0 0 chr3 151062700 151062736 -8537047 + (CCA)n Simple_repeat Simple_repeat 3 38 0 9 1737 180 0 0 0 chr3 151062736 151062756 -8537027 + (CAA)n Simple_repeat Simple_repeat 1 20 0 9 1737 330 67 0 0 chr3 151062898 151062943 -8536840 + (TG)n Simple_repeat Simple_repeat 1 45 0 9 1737 487 310 34 27 chr3 151062947 151063096 -8536687 - B3A SINE B2 -48 150 1 9 1737 340 283 66 0 chr3 151065438 151065520 -8534263 + B3A SINE B2 9 90 -108 9 1737 182 118 29 0 chr3 151065520 151065554 -8534229 + (CAG)n Simple_repeat Simple_repeat 3 37 0 9 1737 340 283 66 0 chr3 151065554 151065577 -8534206 + B3A SINE B2 91 119 -79 9 1737 25 0 0 0 chr3 151065610 151065635 -8534148 + AT_rich Low_complexity Low_complexity 1 25 0 9 1737 590 39 0 13 chr3 151066419 151066497 -8533286 + (TAGA)n Simple_repeat Simple_repeat 4 80 0 1 1737 23 0 0 0 chr3 151067509 151067532 -8532251 + AT_rich Low_complexity Low_complexity 1 23 0 1 1737 546 236 113 21 chr3 151068239 151068425 -8531358 + B3 SINE B2 1 203 -13 1 1737 1000 282 32 30 chr3 151069549 151069918 -8529865 + ORR1D2 LTR MaLR 1 370 0 1 1737 312 38 0 19 chr3 151070228 151070282 -8529501 + L1Md_F2 LINE L1 6528 6580 -2 1 1737 969 76 0 0 chr3 151070495 151070626 -8529157 + (GAAA)n Simple_repeat Simple_repeat 4 134 0 1 1737 517 306 131 54 chr3 151071963 151072260 -8527523 - MTE2a LTR MaLR -59 320 1 1 1737 227 318 53 26 chr3 151072876 151072989 -8526794 + ORR1D1 LTR MaLR 1 116 -258 1 1737 281 337 0 10 chr3 151073165 151073267 -8526516 - MIRc SINE MIR -48 220 120 1 1737 207 324 0 14 chr3 151074508 151074580 -8525203 + GA-rich Low_complexity Low_complexity 4 74 0 1 1737 1207 35 0 110 chr3 151075345 151075536 -8524247 - L1_Mus2 LINE L1 -1 6565 6396 1 1737 1272 94 64 10 chr3 151075714 151075918 -8523865 + L1Md_F2 LINE L1 6355 6569 -13 1 1737 611 127 12 25 chr3 151076043 151076204 -8523579 + (TCTCTG)n Simple_repeat Simple_repeat 2 160 0 1 1737 266 276 88 133 chr3 151076340 151076443 -8523340 - B4A SINE B4 -141 151 53 1 1737 585 0 0 0 chr3 151076443 151076508 -8523275 + (TAGA)n Simple_repeat Simple_repeat 1 65 0 1 1737 1216 41 0 0 chr3 151076564 151076710 -8523073 - B1_Mm SINE Alu 0 147 2 1 1737 1396 73 6 0 chr3 151076710 151076887 -8522896 - B2_Mm1t SINE B2 -15 178 1 1 1737 22 35 0 0 chr3 151077333 151077362 -8522421 + AT_rich Low_complexity Low_complexity 1 29 0 1 1737 478 310 65 9 chr3 151077459 151077674 -8522109 + L1MA4 LINE L1 3906 4132 -1748 1 1737 961 128 27 0 chr3 151077697 151077845 -8521938 + B2_Mm2 SINE B2 1 152 -43 1 1737 270 0 0 0 chr3 151077872 151077902 -8521881 + (CAAA)n Simple_repeat Simple_repeat 3 32 0 1 1737 1048 315 84 28 chr3 151077905 151079069 -8520714 + L1MA4 LINE L1 4149 5384 -496 1 1737 251 289 25 38 chr3 151079141 151079220 -8520563 + ID4_ SINE ID 2 79 -4 1 1737 273 250 33 0 chr3 151079229 151079289 -8520494 + polypurine Low_complexity Low_complexity 1 62 0 1 1737 302 333 47 31 chr3 151079300 151079427 -8520356 + HAL1-3A_ME LINE L1 2284 2412 -446 1 1737 423 337 90 21 chr3 151079429 151079851 -8519932 + L1MA4 LINE L1 5478 5928 -372 1 1737 2694 136 2 14 chr3 151079853 151080279 -8519504 - MTC LTR MaLR 0 421 1 1 1737 465 19 0 0 chr3 151080546 151080600 -8519183 + (GA)n Simple_repeat Simple_repeat 2 55 0 1 1737 210 37 0 0 chr3 151082509 151082536 -8517247 + (TG)n Simple_repeat Simple_repeat 2 28 0 1 1737 201 185 0 0 chr3 151082543 151082608 -8517175 + (TCTG)n Simple_repeat Simple_repeat 4 68 0 1 1737 452 106 0 12 chr3 151082633 151082719 -8517064 + (GA)n Simple_repeat Simple_repeat 2 86 0 1 1737 2507 80 18 3 chr3 151083169 151083507 -8516276 + Lx3_Mus LINE L1 6375 6717 -292 1 1737 697 206 0 46 chr3 151083501 151083654 -8516129 + RMER1B Other Other 777 922 -144 1 1737 1711 142 22 0 chr3 151083660 151083934 -8515849 + Lx3A LINE L1 6700 6979 -2 1 1737 2265 178 109 18 chr3 151084266 151084778 -8515005 - RMER1B Other Other -3 1063 387 1 1737 495 0 0 0 chr3 151087117 151087172 -8512611 + (TG)n Simple_repeat Simple_repeat 2 56 0 1 1737 249 304 215 34 chr3 151087370 151087575 -8512208 - L4 LINE RTE -1230 799 558 1 1737 356 345 28 17 chr3 151087767 151087944 -8511839 - MT2A LTR ERVL -167 366 188 1 1737 328 292 77 24 chr3 151088276 151088483 -8511300 - L1MA9 LINE L1 0 6312 6095 1 1737 537 291 70 0 chr3 151088527 151088699 -8511084 - MER2 DNA MER2_type -48 297 114 1 1737 183 42 0 0 chr3 151088991 151089015 -8510768 + (CAAAAA)n Simple_repeat Simple_repeat 2 25 0 1 1737 549 286 116 12 chr3 151089771 151089944 -8509839 + B3A SINE B2 2 192 -6 1 1737 215 33 159 32 chr3 151090072 151090135 -8509648 + (GTTTG)n Simple_repeat Simple_repeat 2 72 0 1 1737 269 51 0 0 chr3 151090135 151090174 -8509609 - B1_Mur4 SINE Alu 0 150 112 1 1737 189 0 0 0 chr3 151090230 151090251 -8509532 + (TTA)n Simple_repeat Simple_repeat 2 22 0 1 1737 322 383 83 21 chr3 151090664 151090904 -8508879 - MLT1J LTR MaLR -211 301 47 1 1737 382 196 9 9 chr3 151091021 151091134 -8508649 + GA-rich Low_complexity Low_complexity 1 113 0 1 1737 965 156 0 11 chr3 151092992 151093174 -8506609 + GA-rich Low_complexity Low_complexity 1 180 0 1 1737 1116 76 7 0 chr3 151093428 151093572 -8506211 + B1_Mus1 SINE Alu 3 147 -1 1 1737 21 36 0 0 chr3 151094113 151094141 -8505642 + AT_rich Low_complexity Low_complexity 1 28 0 1 1737 259 336 19 9 chr3 151094858 151094966 -8504817 + CT-rich Low_complexity Low_complexity 3 111 0 1 1737 354 209 77 103 chr3 151095772 151095889 -8503894 - B1F SINE Alu -2 147 34 1 1737 4176 47 0 0 chr3 151096006 151096512 -8503271 + L1Md_F2 LINE L1 5772 6277 -305 1 1737 4205 48 8 4 chr3 151096508 151097031 -8502752 - L1Md_F2 LINE L1 -50 6532 6008 1 1737 634 235 7 14 chr3 151097607 151097745 -8502038 + B3A SINE B2 1 137 -61 1 1737 285 29 0 0 chr3 151097773 151097807 -8501976 + (CA)n Simple_repeat Simple_repeat 1 34 0 1 1737 436 281 78 33 chr3 151099889 151100132 -8499651 - Lx7 LINE L1 -294 7402 7149 1 1737 207 0 0 0 chr3 151102579 151102602 -8497181 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1 1737 248 341 8 16 chr3 151102868 151102993 -8496790 + GA-rich Low_complexity Low_complexity 2 125 0 1 1737 356 166 28 21 chr3 151104917 151105059 -8494724 + (TA)n Simple_repeat Simple_repeat 1 143 0 1 1737 417 260 0 0 chr3 151105077 151105173 -8494610 - Lx9 LINE L1 -709 6935 6840 1 1737 219 36 0 0 chr3 151105958 151105986 -8493797 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 1 1737 276 325 0 114 chr3 151106846 151106978 -8492805 + RSINE1 SINE B4 43 159 -6 1 1737 227 321 87 33 chr3 151107528 151107921 -8491862 + L1M2 LINE L1 4957 5370 -773 1 1737 4846 47 0 0 chr3 151107972 151108566 -8491217 + L1Md_F2 LINE L1 5989 6582 0 1 1737 266 53 34 34 chr3 151108726 151108785 -8490998 + (CAAAA)n Simple_repeat Simple_repeat 2 60 0 1 1737 452 296 36 41 chr3 151109007 151109201 -8490582 - B3A SINE B2 -3 195 3 1 1737 789 136 0 67 chr3 151109243 151109408 -8490375 - Lx6 LINE L1 -7 7453 7300 1 1737 263 317 96 62 chr3 151109549 151109733 -8490050 - B4 SINE B4 -63 229 1 1 1737 393 223 0 24 chr3 151109856 151109980 -8489803 - Lx7 LINE L1 -167 7529 7409 1 1737 477 0 0 0 chr3 151109980 151110033 -8489750 + (CA)n Simple_repeat Simple_repeat 2 54 0 1 1737 498 33 0 0 chr3 151110033 151110092 -8489691 + (TA)n Simple_repeat Simple_repeat 2 61 0 1 1737 665 181 180 6 chr3 151110092 151110253 -8489530 - Lx7 LINE L1 -609 7087 6899 1 1737 4029 219 41 84 chr3 151110258 151111276 -8488507 - Lx7 LINE L1 -976 6720 5747 1 1737 1092 90 0 0 chr3 151111276 151111421 -8488362 - B1_Mus1 SINE Alu 0 148 4 1 1737 4029 219 41 84 chr3 151111421 151111568 -8488215 - Lx7 LINE L1 -1950 5746 5605 1 1737 3454 136 34 34 chr3 151111570 151112158 -8487625 - MT2B LTR ERVL -12 589 2 1 1737 987 48 0 0 chr3 151113229 151113354 -8486429 + (GA)n Simple_repeat Simple_repeat 1 125 0 1 1737 272 91 23 0 chr3 151113354 151113398 -8486385 + (AGGGGG)n Simple_repeat Simple_repeat 6 50 0 1 1737 225 275 38 0 chr3 151114334 151114414 -8485369 + (TTTA)n Simple_repeat Simple_repeat 2 84 0 1 1737 472 257 41 62 chr3 151114415 151114560 -8485223 - B1F SINE Alu -7 142 1 1 1737 541 263 0 0 chr3 151115727 151115864 -8483919 + B1F SINE Alu 5 141 -8 1 1737 380 20 20 0 chr3 151116016 151116065 -8483718 + (CA)n Simple_repeat Simple_repeat 2 51 0 1 1737 269 246 14 28 chr3 151116076 151116147 -8483636 + GA-rich Low_complexity Low_complexity 4 73 0 1 1737 200 264 41 14 chr3 151116644 151116717 -8483066 + MIRb SINE MIR 179 253 -15 1 1737 456 289 45 65 chr3 151117402 151117602 -8482181 + B3A SINE B2 3 198 0 1 1737 579 282 8 0 chr3 151117805 151117929 -8481854 + B3A SINE B2 4 128 -70 1 1737 357 131 0 0 chr3 151117933 151117994 -8481789 + (TA)n Simple_repeat Simple_repeat 1 61 0 1 1737 532 297 45 6 chr3 151118054 151118210 -8481573 + RSINE1 SINE B4 4 165 0 1 1737 28 29 0 0 chr3 151118219 151118254 -8481529 + AT_rich Low_complexity Low_complexity 1 35 0 1 1737 23 0 0 0 chr3 151118695 151118718 -8481065 + AT_rich Low_complexity Low_complexity 1 23 0 1 1737 414 248 9 9 chr3 151118732 151118846 -8480937 - Lx2B LINE L1 -4 6996 6883 1 1737 6255 135 21 27 chr3 151118847 151119963 -8479820 - L1_Mur2 LINE L1 -481 5396 4287 1 1737 744 33 0 0 chr3 151120196 151120287 -8479496 + (TC)n Simple_repeat Simple_repeat 2 92 0 1 1737 1302 100 0 0 chr3 151120334 151120704 -8479079 + (TG)n Simple_repeat Simple_repeat 1 370 0 1 1737 188 122 24 0 chr3 151120748 151120789 -8478994 + (TAAA)n Simple_repeat Simple_repeat 1 42 0 1 1737 258 32 0 0 chr3 151121847 151121878 -8477905 + (TTTG)n Simple_repeat Simple_repeat 3 33 0 1 1737 291 331 97 0 chr3 151121879 151122003 -8477780 - B1F SINE Alu -8 141 6 1 1737 560 162 21 14 chr3 151123528 151123672 -8476111 + (TAGA)n Simple_repeat Simple_repeat 1 145 0 1 1737 1103 44 0 0 chr3 151123798 151123933 -8475850 + B1_Mus2 SINE Alu 1 135 -12 1 1737 194 0 39 0 chr3 151123935 151123961 -8475822 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 1 1737 1089 82 0 0 chr3 151124523 151124669 -8475114 + B1_Mm SINE Alu 2 147 0 1 1737 267 152 0 0 chr3 151124669 151124715 -8475068 + GA-rich Low_complexity Low_complexity 1 46 0 1 1737 827 153 0 7 chr3 151124728 151124879 -8474904 + GA-rich Low_complexity Low_complexity 1 150 0 1 217 14224 45 2 1 chr3 151124879 151126670 -8473113 - L1_Mm LINE L1 -1193 4690 2898 1 1738 6180 30 0 0 chr3 151126670 151127393 -8472390 + L1Md_F3 LINE L1 5847 6569 -15 1 1738 820 58 33 0 chr3 151127404 151127525 -8472258 + (GAAAA)n Simple_repeat Simple_repeat 2 126 0 2 1738 270 81 0 0 chr3 151127688 151127725 -8472058 + (TCC)n Simple_repeat Simple_repeat 3 39 0 2 1738 31 44 0 0 chr3 151127814 151127859 -8471924 + AT_rich Low_complexity Low_complexity 1 45 0 2 1738 456 274 58 29 chr3 151128740 151128913 -8470870 + Lx8 LINE L1 7152 7329 -144 2 1738 593 301 87 0 chr3 151129295 151129491 -8470292 + ID_B1 SINE B4 5 217 -7 2 1738 24 0 0 0 chr3 151129598 151129622 -8470161 + AT_rich Low_complexity Low_complexity 1 24 0 2 1738 455 275 0 0 chr3 151130086 151130195 -8469588 + ID_B1 SINE B4 116 224 0 2 1738 449 178 0 8 chr3 151131547 151131666 -8468117 + (TG)n Simple_repeat Simple_repeat 1 118 0 2 1738 190 185 0 44 chr3 151131728 151131796 -8467987 + (TATATG)n Simple_repeat Simple_repeat 6 70 0 2 1738 357 292 6 24 chr3 151131798 151131963 -8467820 + (TG)n Simple_repeat Simple_repeat 2 163 0 2 1738 351 0 0 0 chr3 151131963 151132002 -8467781 + (TC)n Simple_repeat Simple_repeat 2 40 0 2 1738 369 0 0 0 chr3 151132002 151132042 -8467741 + (TG)n Simple_repeat Simple_repeat 2 42 0 2 1738 358 290 0 10 chr3 151132399 151132500 -8467283 + (CA)n Simple_repeat Simple_repeat 1 100 0 2 1738 313 379 30 8 chr3 151132735 151132868 -8466915 - B1F SINE Alu -11 138 3 2 1738 296 335 75 11 chr3 151134376 151134637 -8465146 - L1M5 LINE L1 -394 5770 5492 2 1738 307 239 76 17 chr3 151134765 151134884 -8464899 - Lx5 LINE L1 0 7050 6925 2 1738 391 75 0 43 chr3 151134885 151134955 -8464828 + (CCCCCT)n Simple_repeat Simple_repeat 4 70 0 2 1738 3015 236 126 23 chr3 151134955 151135054 -8464729 - Lx5 LINE L1 -35 7015 6910 2 1738 414 0 0 0 chr3 151135054 151135100 -8464683 + (CA)n Simple_repeat Simple_repeat 1 46 0 2 1738 7785 184 73 11 chr3 151135100 151137329 -8462454 - Lx5 LINE L1 -141 6909 4512 2 1738 460 30 30 0 chr3 151137461 151137527 -8462256 + (TA)n Simple_repeat Simple_repeat 2 69 0 2 1738 3322 45 0 0 chr3 151137647 151138043 -8461740 - MTA_Mm LTR MaLR 0 396 1 2 1738 27 0 0 0 chr3 151138077 151138104 -8461679 + AT_rich Low_complexity Low_complexity 1 27 0 2 1738 224 40 0 74 chr3 151138131 151138185 -8461598 + (TTTTG)n Simple_repeat Simple_repeat 3 52 0 2 1738 183 330 116 11 chr3 151139286 151139381 -8460402 - MIRb SINE MIR -33 235 131 2 1738 1188 40 0 13 chr3 151140202 151140352 -8459431 + B1_Mus1 SINE Alu 1 148 0 2 1738 633 128 0 0 chr3 151140776 151140878 -8458905 + (CA)n Simple_repeat Simple_repeat 2 103 0 2 1738 29 47 0 0 chr3 151142144 151142187 -8457596 + AT_rich Low_complexity Low_complexity 1 43 0 2 1738 288 178 0 0 chr3 151144193 151144266 -8455517 + (CA)n Simple_repeat Simple_repeat 2 74 0 2 1738 611 155 6 19 chr3 151144261 151144419 -8455364 + (TA)n Simple_repeat Simple_repeat 2 157 0 2 1738 447 326 156 68 chr3 151144552 151144937 -8454846 + Tigger7 DNA MER2_type 26 444 -2047 2 1738 425 299 103 52 chr3 151144981 151145214 -8454569 + Tigger7 DNA MER2_type 2239 2483 -8 2 1738 206 250 13 53 chr3 151145851 151145927 -8453856 + L4 LINE RTE 532 604 -1425 2 1738 311 0 0 25 chr3 151147991 151148031 -8451752 + (CAAAA)n Simple_repeat Simple_repeat 4 42 0 2 1738 186 43 0 0 chr3 151149255 151149278 -8450505 + (TG)n Simple_repeat Simple_repeat 2 24 0 2 1738 521 305 22 17 chr3 151149321 151149501 -8450282 - B3A SINE B2 -16 182 2 2 1738 21 71 0 0 chr3 151149599 151149641 -8450142 + AT_rich Low_complexity Low_complexity 1 42 0 2 1738 303 260 0 0 chr3 151150502 151150625 -8449158 + (TG)n Simple_repeat Simple_repeat 2 124 0 2 1738 681 296 41 71 chr3 151153035 151153301 -8446482 + RLTR26 LTR ERVK 168 425 -217 2 1738 386 356 55 27 chr3 151154276 151154568 -8445215 + Lx9 LINE L1 7137 7436 -208 2 1738 548 344 13 31 chr3 151154902 151155130 -8444653 + Lx8 LINE L1 7065 7288 -185 2 1738 1058 276 30 50 chr3 151155708 151156108 -8443675 + Lx8 LINE L1 7047 7438 -35 2 1738 3462 25 0 0 chr3 151156168 151156564 -8443219 + MTA_Mm LTR MaLR 1 396 0 2 1738 9507 13 7 0 chr3 151156564 151157654 -8442129 + MTA_Mm-int LTR MaLR 1 1098 0 2 1738 3462 25 0 0 chr3 151157654 151158050 -8441733 + MTA_Mm LTR MaLR 1 396 0 2 1738 5573 67 0 14 chr3 151158755 151159495 -8440288 + L1Md_F2 LINE L1 5851 6580 -2 2 1738 243 312 86 11 chr3 151159611 151159786 -8439997 - L1M6 LINE L1 -6304 192 5 2 1738 333 0 0 0 chr3 151159927 151159964 -8439819 + (CA)n Simple_repeat Simple_repeat 2 38 0 2 1738 331 317 0 0 chr3 151162289 151162371 -8437412 - B4A SINE B4 -12 280 199 2 1738 239 227 15 0 chr3 151162376 151162442 -8437341 + CT-rich Low_complexity Low_complexity 1 67 0 2 1738 345 290 121 21 chr3 151162442 151162583 -8437200 - HAL1-3A_ME LINE L1 -420 2438 2284 2 1738 767 156 17 11 chr3 151162584 151162759 -8437024 + CT-rich Low_complexity Low_complexity 1 176 0 2 1738 421 368 24 6 chr3 151162773 151162937 -8436846 - B4A SINE B4 -123 169 3 2 1738 724 282 20 0 chr3 151164233 151164428 -8435355 + RMER30 DNA MER1_type 2 200 -2 2 1738 182 317 0 16 chr3 151166280 151166341 -8433442 + L3 LINE CR1 1045 1104 -3385 2 1738 843 153 0 0 chr3 151166687 151166837 -8432946 + (TA)n Simple_repeat Simple_repeat 2 151 0 2 1738 424 300 73 60 chr3 151167225 151167459 -8432324 - ORR1E LTR MaLR -116 243 7 2 1738 371 262 173 8 chr3 151167958 151168085 -8431698 - MTD LTR MaLR -43 376 229 2 1738 528 270 82 12 chr3 151168969 151169169 -8430614 - MTD LTR MaLR -168 253 47 2 1738 2466 88 49 6 chr3 151169527 151169892 -8429891 - L1_Mus3 LINE L1 -2 6636 6256 2 1738 234 336 69 52 chr3 151170947 151171063 -8428720 + RSINE1 SINE B4 43 160 -5 2 1738 433 273 11 11 chr3 151171097 151171271 -8428512 + (CTCA)n Simple_repeat Simple_repeat 4 177 0 2 1738 388 214 0 11 chr3 151171276 151171451 -8428332 + (CA)n Simple_repeat Simple_repeat 1 173 0 2 1738 182 194 0 70 chr3 151171440 151171612 -8428171 + (CTCA)n Simple_repeat Simple_repeat 3 162 0 2 1738 318 26 0 0 chr3 151172496 151172535 -8427248 + (GTTTG)n Simple_repeat Simple_repeat 1 39 0 2 1738 1713 194 19 30 chr3 151174061 151174427 -8425356 - ORR1B1 LTR MaLR 0 394 33 2 1738 915 239 40 10 chr3 151175285 151175484 -8424299 - B3 SINE B2 -6 210 6 2 1738 624 231 0 8 chr3 151175611 151175729 -8424054 + B3A SINE B2 1 117 -81 2 1738 12177 95 14 36 chr3 151175729 151178426 -8421357 + L1VL4 LINE L1 201 2833 -726 2 1738 613 139 8 8 chr3 151178426 151178549 -8421234 + CT-rich Low_complexity Low_complexity 2 124 0 2 1738 712 265 197 14 chr3 151178575 151178854 -8420929 + MTC LTR MaLR 38 367 -54 2 1738 336 77 0 0 chr3 151179186 151179238 -8420545 + (TG)n Simple_repeat Simple_repeat 1 52 0 2 1738 242 318 0 83 chr3 151179439 151179535 -8420248 + B3 SINE B2 101 188 -28 2 1738 1185 68 7 0 chr3 151179625 151179772 -8420011 - B1_Mus1 SINE Alu 0 148 1 2 1738 540 40 0 0 chr3 151182313 151182387 -8417396 + L1_Mus3 LINE L1 6560 6633 -5 2 1738 1130 63 14 0 chr3 151182555 151182698 -8417085 + B1_Mm SINE Alu 1 145 -2 2 1738 387 0 0 0 chr3 151182698 151182741 -8417042 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 2 1738 195 42 0 0 chr3 151183111 151183135 -8416648 + (CAA)n Simple_repeat Simple_repeat 1 24 0 2 1738 244 217 22 0 chr3 151183308 151183400 -8416383 + GA-rich Low_complexity Low_complexity 3 96 0 2 1738 28 29 0 0 chr3 151185599 151185634 -8414149 + AT_rich Low_complexity Low_complexity 1 35 0 2 1738 2016 227 60 23 chr3 151186404 151186922 -8412861 - Lx6 LINE L1 -8 7452 6916 2 1738 213 39 0 0 chr3 151187484 151187510 -8412273 + (TA)n Simple_repeat Simple_repeat 2 27 0 2 1738 436 196 29 14 chr3 151188331 151188471 -8411312 + G-rich Low_complexity Low_complexity 2 143 0 2 1738 450 0 0 0 chr3 151190868 151190918 -8408865 + (TC)n Simple_repeat Simple_repeat 1 50 0 2 1738 237 280 58 47 chr3 151190933 151191019 -8408764 + L2c LINE L2 3076 3162 -225 2 1738 428 301 51 11 chr3 151191761 151191939 -8407844 + B3A SINE B2 4 188 -10 2 1738 2594 157 215 0 chr3 151194733 151195301 -8404482 - RMER6C LTR ERVK 0 690 1 2 1738 404 285 54 138 chr3 151196485 151196725 -8403058 - ID_B1 SINE B4 -4 220 1 2 1738 387 0 0 0 chr3 151197548 151197591 -8402192 + (TA)n Simple_repeat Simple_repeat 1 43 0 2 1738 685 336 126 43 chr3 151197728 151197923 -8401860 - MLT1E2 LTR MaLR 0 627 405 2 1738 1951 134 70 6 chr3 151197923 151198039 -8401744 - Lx2B LINE L1 0 7000 6885 2 1738 272 55 73 0 chr3 151198039 151198094 -8401689 + (CA)n Simple_repeat Simple_repeat 1 59 0 2 1738 1951 134 70 6 chr3 151198094 151198307 -8401476 - Lx2B LINE L1 -116 6884 6651 2 1738 685 336 126 43 chr3 151198307 151198690 -8401093 - MLT1E2 LTR MaLR -223 404 1 2 1738 295 302 34 23 chr3 151200549 151200637 -8399146 + PB1D7 SINE Alu 32 120 0 2 1738 627 116 16 8 chr3 151201243 151201365 -8398418 + (TCC)n Simple_repeat Simple_repeat 3 125 0 2 1738 561 15 0 0 chr3 151201490 151201556 -8398227 + (TG)n Simple_repeat Simple_repeat 1 66 0 2 1738 29 28 0 0 chr3 151201922 151201958 -8397825 + AT_rich Low_complexity Low_complexity 1 36 0 2 1738 273 356 0 0 chr3 151202286 151202373 -8397410 + BC1_Mm scRNA scRNA 8 94 -58 2 1738 207 0 0 0 chr3 151202449 151202472 -8397311 + (TTG)n Simple_repeat Simple_repeat 2 24 0 2 1738 1008 79 0 61 chr3 151202472 151202620 -8397163 - B1_Mm SINE Alu -8 139 1 2 1738 22 70 0 0 chr3 151202726 151202769 -8397014 + AT_rich Low_complexity Low_complexity 1 43 0 2 1738 749 248 87 5 chr3 151202829 151203024 -8396759 + B3 SINE B2 1 211 -5 2 1738 1365 71 11 0 chr3 151203369 151203552 -8396231 - B2_Mm1t SINE B2 -7 186 2 2 1738 259 187 13 13 chr3 151204065 151204126 -8395657 + CT-rich Low_complexity Low_complexity 17 77 0 2 1738 1191 97 0 0 chr3 151204126 151204302 -8395481 + (TTCC)n Simple_repeat Simple_repeat 3 178 0 2 1738 259 187 13 13 chr3 151204302 151204316 -8395467 + polypyrimidine Low_complexity Low_complexity 3 16 0 2 1738 30 45 0 0 chr3 151205920 151205964 -8393819 + AT_rich Low_complexity Low_complexity 1 44 0 2 1738 222 37 0 0 chr3 151206020 151206047 -8393736 + (TATAA)n Simple_repeat Simple_repeat 4 30 0 2 1738 284 317 63 31 chr3 151207940 151208067 -8391716 + MLT1D LTR MaLR 351 481 -24 3 1738 2890 134 56 8 chr3 151208725 151209205 -8390578 + Lx2A1 LINE L1 6500 7002 -6 3 1738 311 325 0 0 chr3 151209553 151209630 -8390153 - ID4 SINE ID -2 81 5 3 1738 240 86 0 0 chr3 151209856 151209891 -8389892 + (TTG)n Simple_repeat Simple_repeat 2 36 0 3 1738 378 250 83 9 chr3 151209891 151210000 -8389783 - ID_B1 SINE B4 -11 213 97 3 1738 221 325 11 11 chr3 151212739 151212826 -8386957 + (CA)n Simple_repeat Simple_repeat 1 87 0 3 1738 335 60 20 0 chr3 151212945 151212995 -8386788 + (TA)n Simple_repeat Simple_repeat 1 51 0 3 1738 432 55 0 0 chr3 151212995 151213050 -8386733 + (TG)n Simple_repeat Simple_repeat 2 56 0 3 1738 2804 75 2 18 chr3 151213098 151213491 -8386292 + L1Md_F2 LINE L1 6183 6569 -13 3 1738 243 357 96 37 chr3 151215114 151215332 -8384451 + MER77 LTR ERVL 287 517 -90 3 1738 260 290 41 51 chr3 151215334 151215432 -8384351 + ID_B1 SINE B4 80 176 -48 3 1738 421 245 19 48 chr3 151215345 151215448 -8384335 + PB1D10 SINE Alu 12 111 -6 3 1738 198 156 0 0 chr3 151215455 151215500 -8384283 + (TAA)n Simple_repeat Simple_repeat 1 45 0 3 1738 987 308 68 89 chr3 151215695 151216076 -8383707 - MLT2C1 LTR ERVL -41 373 1 3 1738 494 287 32 75 chr3 151216077 151216265 -8383518 + B3A SINE B2 3 182 -16 3 1738 29 0 0 0 chr3 151216276 151216305 -8383478 + AT_rich Low_complexity Low_complexity 1 29 0 3 1738 357 286 20 66 chr3 151216412 151216610 -8383173 + L1MC3 LINE L1 4831 5019 -1127 3 1738 1507 251 109 16 chr3 151216643 151217250 -8382533 + L1MC3 LINE L1 5523 6185 -1600 3 1738 996 280 70 13 chr3 151218260 151218560 -8381223 + MTD LTR MaLR 42 358 -61 3 1738 721 295 72 49 chr3 151218733 151218821 -8380962 + B4A SINE B4 1 88 -204 3 1738 186 43 0 0 chr3 151218821 151218844 -8380939 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 3 1738 721 295 72 49 chr3 151218844 151219019 -8380764 + B4A SINE B4 89 270 -22 3 1738 1702 333 18 26 chr3 151219046 151219925 -8379858 - Lx9 LINE L1 -127 7517 6646 3 1738 225 0 0 0 chr3 151220496 151220521 -8379262 + (CA)n Simple_repeat Simple_repeat 2 26 0 3 1738 405 0 0 0 chr3 151220521 151220565 -8379218 + (GA)n Simple_repeat Simple_repeat 2 46 0 3 1738 249 202 170 53 chr3 151220712 151220806 -8378977 + L2c LINE L2 3245 3349 -38 3 1738 1060 75 6 58 chr3 151221210 151221366 -8378417 + B1_Mus1 SINE Alu 1 148 0 3 1738 195 320 31 10 chr3 151222407 151222505 -8377278 - L2 LINE L2 -389 3030 2931 3 1738 310 272 25 0 chr3 151222921 151223002 -8376781 + B4 SINE B4 1 83 -209 3 1738 474 324 60 36 chr3 151223261 151223698 -8376085 - MLT1D LTR MaLR -11 616 3 3 1738 189 267 250 29 chr3 151224021 151224125 -8375658 + MIRb SINE MIR 134 260 -8 3 1738 276 127 0 0 chr3 151224222 151224277 -8375506 + (TTTG)n Simple_repeat Simple_repeat 2 56 0 3 1738 1076 108 0 6 chr3 151224492 151224659 -8375124 + (TTC)n Simple_repeat Simple_repeat 1 166 0 3 1738 251 407 23 6 chr3 151226261 151226434 -8373349 + MIRb SINE MIR 4 179 -89 3 1738 570 67 0 0 chr3 151227398 151227473 -8372310 + (TA)n Simple_repeat Simple_repeat 1 75 0 3 1738 207 0 0 0 chr3 151227473 151227495 -8372288 + (GA)n Simple_repeat Simple_repeat 2 24 0 3 1738 318 122 75 25 chr3 151227496 151227656 -8372127 + (TAGA)n Simple_repeat Simple_repeat 3 170 0 3 1738 325 123 76 19 chr3 151227725 151227883 -8371900 + (TAGA)n Simple_repeat Simple_repeat 4 170 0 3 1738 650 78 71 12 chr3 151227946 151228114 -8371669 + (TAGA)n Simple_repeat Simple_repeat 3 180 0 3 1738 21 0 0 0 chr3 151228195 151228216 -8371567 + AT_rich Low_complexity Low_complexity 1 21 0 3 1738 735 53 18 9 chr3 151228217 151228331 -8371452 + (TAGA)n Simple_repeat Simple_repeat 3 117 0 3 1738 438 139 0 0 chr3 151228587 151228659 -8371124 + (GGGGA)n Simple_repeat Simple_repeat 5 76 0 3 1738 31 0 0 0 chr3 151229927 151229958 -8369825 + AT_rich Low_complexity Low_complexity 1 31 0 3 1738 630 68 0 0 chr3 151230098 151230186 -8369597 + (TG)n Simple_repeat Simple_repeat 1 88 0 3 1738 26 0 0 0 chr3 151230499 151230525 -8369258 + AT_rich Low_complexity Low_complexity 1 26 0 3 1738 2160 124 9 3 chr3 151234696 151235019 -8364764 - ORR1A2 LTR MaLR -2 325 1 3 1738 789 252 29 19 chr3 151235479 151235689 -8364094 - B3 SINE B2 0 216 5 3 1738 345 364 66 66 chr3 151235795 151236145 -8363638 - L1M5 LINE L1 -1008 5138 4789 3 1738 495 0 0 0 chr3 151236775 151236830 -8362953 + (TG)n Simple_repeat Simple_repeat 2 56 0 3 1738 1718 316 74 28 chr3 151236851 151237779 -8362004 - Lx9 LINE L1 -208 7436 6466 3 1738 866 271 52 16 chr3 151238591 151238839 -8360944 - MIR SINE MIR 0 262 6 3 1738 247 369 38 30 chr3 151239504 151239729 -8360054 - MIR SINE MIR -37 231 10 3 1738 393 320 70 124 chr3 151240229 151240297 -8359486 - MLT1A0 LTR MaLR 0 365 292 3 1738 2126 57 0 0 chr3 151240297 151240561 -8359222 - L1_Mus1 LINE L1 0 6567 6304 3 1738 393 320 70 124 chr3 151240561 151240878 -8358905 - MLT1A0 LTR MaLR -74 291 1 3 1738 1399 264 117 42 chr3 151240930 151241425 -8358358 - MLT2B3 LTR ERVL -22 532 1 3 1738 1067 168 5 15 chr3 151241635 151241834 -8357949 + Lx4A LINE L1 6845 7041 -17 3 1738 731 36 27 9 chr3 151242012 151242124 -8357659 + (TAGA)n Simple_repeat Simple_repeat 2 115 0 3 1738 293 247 43 33 chr3 151242148 151242240 -8357543 - MLT2B2 LTR ERVL -35 527 435 3 1738 435 305 69 20 chr3 151242376 151242580 -8357203 - ORR1E LTR MaLR -126 233 20 3 1738 1136 317 48 50 chr3 151242571 151243013 -8356770 - MLT2B2 LTR ERVL -127 429 3 3 1738 273 377 45 53 chr3 151243297 151243541 -8356242 - L2 LINE L2 -1480 1939 1698 3 1738 248 304 144 29 chr3 151244613 151244786 -8354997 + L1M5 LINE L1 5383 5575 -665 3 1738 248 364 0 20 chr3 151244832 151244933 -8354850 + G-rich Low_complexity Low_complexity 1 99 0 3 1738 656 287 6 6 chr3 151244946 151245104 -8354679 + RSINE1 SINE B4 8 165 0 3 1738 222 118 0 0 chr3 151245108 151245142 -8354641 + (CA)n Simple_repeat Simple_repeat 1 34 0 3 1738 1155 68 0 26 chr3 151245374 151245525 -8354258 + B1_Mus2 SINE Alu 1 147 0 3 1738 313 266 97 35 chr3 151245526 151245670 -8354113 + L1MEf LINE L1 3072 3197 -2949 3 1738 271 260 105 9 chr3 151245756 151245861 -8353922 + PB1D10 SINE Alu 2 116 -1 3 1738 22 35 0 0 chr3 151247921 151247950 -8351833 + AT_rich Low_complexity Low_complexity 1 29 0 3 1738 1987 168 13 52 chr3 151248891 151249274 -8350509 + ORR1C1 LTR MaLR 1 368 -10 3 1738 1037 232 48 19 chr3 151249285 151249553 -8350230 + ORR1C1-int LTR MaLR 6 281 -1228 3 1738 684 93 0 0 chr3 151249555 151249652 -8350131 + (GGGA)n Simple_repeat Simple_repeat 4 100 0 3 1738 2092 223 125 15 chr3 151249712 151250330 -8349453 + ORR1C1-int LTR MaLR 284 969 -540 3 1738 1299 104 54 10 chr3 151250330 151250534 -8349249 + RLTR11A LTR ERVK 1 213 -315 3 1738 633 152 45 0 chr3 151250531 151250643 -8349140 + ORR1C1 LTR MaLR 258 374 -4 3 1738 545 312 31 51 chr3 151250825 151251021 -8348762 + ORR1E LTR MaLR 3 194 -165 3 1738 226 280 45 157 chr3 151251227 151251405 -8348378 + MamRep137 DNA TcMar? 137 294 -150 3 1738 184 362 0 0 chr3 151251587 151251656 -8348127 - L2a LINE L2 0 3426 3358 3 1738 602 317 68 47 chr3 151251854 151252175 -8347608 + MLT1E1A LTR MaLR 340 667 -13 3 1738 1609 198 77 35 chr3 151252285 151252661 -8347122 + RMER10B LTR ERVL 1 392 -6 3 1738 427 270 20 20 chr3 151253493 151253644 -8346139 + L1M5 LINE L1 5030 5180 -966 3 1738 1231 276 35 20 chr3 151253719 151254220 -8345563 + L1MB1 LINE L1 5507 6021 -153 3 1738 300 200 53 13 chr3 151255073 151255149 -8344634 - MTE-int LTR MaLR -451 1129 1051 3 1738 241 213 0 0 chr3 151255348 151255395 -8344388 - MTE-int LTR MaLR -528 1052 1006 3 1738 790 189 7 7 chr3 151255465 151255614 -8344169 + B1_Mur4 SINE Alu 1 149 -1 3 1738 729 139 0 0 chr3 151255614 151255736 -8344047 + (GA)n Simple_repeat Simple_repeat 1 122 0 3 217 6160 58 4 10 chr3 151256844 151257674 -8342109 + RLTR22_Mus LTR ERVK 1 825 -983 3 1739 1748 107 4 4 chr3 151257886 151258140 -8341643 + RLTR22_Mur LTR ERVK 1591 1844 -4 3 1739 375 89 0 0 chr3 151258482 151258538 -8341245 + (TG)n Simple_repeat Simple_repeat 1 56 0 3 1739 614 246 97 90 chr3 151258557 151258847 -8340936 - B4A SINE B4 0 292 1 3 1739 461 302 119 52 chr3 151259476 151260132 -8339651 - L1MA4 LINE L1 -396 5904 5178 3 1739 260 274 114 43 chr3 151260221 151260431 -8339352 + RLTR42-int LTR ERVK 1156 1380 -4142 3 1739 4185 144 63 22 chr3 151260568 151261349 -8338434 + RLTR22_Mur LTR ERVK 1 813 -1035 3 1739 5426 78 25 17 chr3 151261675 151262429 -8337354 - L1Md_F2 LINE L1 -3 6579 5820 3 1739 2180 44 0 0 chr3 151262431 151262703 -8337080 + L1Md_F2 LINE L1 5542 5813 -70 3 1739 1154 278 93 9 chr3 151263201 151263752 -8336031 - L1MA4 LINE L1 -1150 4993 4397 3 1739 299 243 87 0 chr3 151263785 151263888 -8335895 - L1MEe LINE L1 -3691 1163 1052 3 1739 451 348 91 5 chr3 151264108 151264316 -8335467 + MTD LTR MaLR 35 260 -159 3 1739 344 127 0 18 chr3 151264316 151264372 -8335411 - MERVL-int LTR ERVL -972 4513 4459 3 1739 1157 195 127 46 chr3 151264396 151264703 -8335080 - IAPEY3_LTR LTR ERVK 0 332 1 3 1739 501 261 57 7 chr3 151264703 151264838 -8334945 + MTD LTR MaLR 266 403 -16 3 1739 27 0 0 0 chr3 151266810 151266837 -8332946 + AT_rich Low_complexity Low_complexity 1 27 0 3 1739 494 303 65 0 chr3 151266857 151267012 -8332771 - B3A SINE B2 -29 169 5 3 1739 480 325 69 22 chr3 151267416 151267693 -8332090 - B4A SINE B4 -2 290 1 3 1739 189 0 0 0 chr3 151268218 151268239 -8331544 + (TG)n Simple_repeat Simple_repeat 1 21 0 3 1739 480 18 0 0 chr3 151268239 151268295 -8331488 + (GA)n Simple_repeat Simple_repeat 1 57 0 3 1739 760 204 63 26 chr3 151269248 151269439 -8330344 + B3A SINE B2 1 198 0 3 1739 417 54 0 0 chr3 151270599 151270655 -8329128 + (CA)n Simple_repeat Simple_repeat 2 57 0 3 1739 414 0 0 0 chr3 151270667 151270713 -8329070 + (GA)n Simple_repeat Simple_repeat 1 46 0 3 1739 330 257 48 27 chr3 151270950 151271138 -8328645 + L1MD LINE L1 5283 5474 -885 3 1739 993 0 0 0 chr3 151271306 151271413 -8328370 + U6 snRNA snRNA 1 107 0 3 1739 3538 5 0 0 chr3 151271413 151271808 -8327975 + L1Md_A LINE L1 6188 6582 0 4 1739 405 0 0 0 chr3 151272395 151272440 -8327343 + (TG)n Simple_repeat Simple_repeat 2 46 0 4 1739 555 16 0 0 chr3 151273885 151273949 -8325834 + (CA)n Simple_repeat Simple_repeat 2 65 0 4 1739 24 0 0 0 chr3 151274628 151274652 -8325131 + AT_rich Low_complexity Low_complexity 1 24 0 4 1739 705 266 75 5 chr3 151276384 151276584 -8323199 - B3 SINE B2 0 216 3 4 1739 499 73 0 0 chr3 151276806 151276874 -8322909 - Lx3_Mus LINE L1 -701 6308 6241 4 1739 5029 85 16 1 chr3 151276874 151277566 -8322217 + Lx3_Mus LINE L1 6300 7001 -8 4 1739 2490 147 12 19 chr3 151280489 151280899 -8318884 + MTB_Mm LTR MaLR 1 407 0 4 1739 461 292 93 63 chr3 151281079 151281349 -8318434 + B4A SINE B4 2 279 -13 4 1739 292 203 119 0 chr3 151281412 151281471 -8318312 + B4A SINE B4 26 91 -201 4 1739 207 69 0 0 chr3 151281558 151281587 -8318196 + (TG)n Simple_repeat Simple_repeat 2 30 0 4 1739 1859 233 16 14 chr3 151281666 151282097 -8317686 + Lx5 LINE L1 6117 6548 -502 4 1739 2490 192 32 20 chr3 151282097 151282593 -8317190 - RLTR11A2 LTR ERVK 0 527 27 4 1739 255 61 0 0 chr3 151282593 151282626 -8317157 + (CAAA)n Simple_repeat Simple_repeat 1 33 0 4 1739 491 282 25 105 chr3 151282626 151282654 -8317129 - RLTR11A2 LTR ERVK -423 30 4 4 1739 1958 264 12 19 chr3 151282659 151283141 -8316642 + Lx5 LINE L1 6569 7047 -3 4 1739 252 249 84 0 chr3 151283223 151283347 -8316436 - L1MC2 LINE L1 -27 6317 6250 4 1739 242 200 15 30 chr3 151283467 151283534 -8316249 - L1MC3 LINE L1 -281 7504 7439 4 1739 516 282 59 20 chr3 151284062 151284214 -8315569 + MLT1A LTR MaLR 189 346 -28 4 1739 707 319 42 23 chr3 151284289 151284473 -8315310 + L1MA5 LINE L1 5448 5631 -669 4 1739 387 0 0 0 chr3 151284473 151284516 -8315267 + (TG)n Simple_repeat Simple_repeat 1 43 0 4 1739 707 319 42 23 chr3 151284516 151284764 -8315019 + L1MA5 LINE L1 5632 5888 -412 4 1739 323 282 19 51 chr3 151284819 151284976 -8314807 - Lx7 LINE L1 -7 7689 7538 4 1739 219 114 0 0 chr3 151285016 151285051 -8314732 + (GA)n Simple_repeat Simple_repeat 2 36 0 4 1739 594 277 101 29 chr3 151285072 151285448 -8314335 + L1MA5 LINE L1 5898 6300 0 4 1739 4225 138 23 7 chr3 151285510 151286873 -8312910 + L1_Mus1 LINE L1 212 1630 -4253 4 1739 36868 7 0 1 chr3 151286872 151292659 -8307124 + L1Md_A LINE L1 1 5586 -297 4 1739 9063 3 0 0 chr3 151292659 151293655 -8306128 + L1Md_A LINE L1 5587 6582 0 4 1739 27885 93 11 1 chr3 151293659 151298559 -8301224 + L1_Mus1 LINE L1 1615 6565 -2 4 1739 326 311 70 15 chr3 151299429 151299628 -8300155 - LTR37A LTR ERV1 -45 381 172 4 1739 23 54 0 0 chr3 151300929 151300966 -8298817 + AT_rich Low_complexity Low_complexity 1 37 0 4 1739 611 277 43 109 chr3 151302665 151303067 -8296716 - ORR1D1 LTR MaLR -3 418 2 4 1739 1351 250 58 41 chr3 151303360 151303840 -8295943 + Lx6 LINE L1 6535 7434 -26 4 1739 198 103 0 0 chr3 151304014 151304043 -8295740 + (TTTA)n Simple_repeat Simple_repeat 1 29 0 4 1739 1962 153 96 11 chr3 151304043 151304407 -8295376 - Lx4A LINE L1 -4 7054 6660 4 1739 1687 116 35 0 chr3 151304439 151304698 -8295085 - Lx2 LINE L1 -1 6996 6729 4 1739 3286 152 3 7 chr3 151304698 151305292 -8294491 + L1_Mur2 LINE L1 4635 5226 -651 4 1739 1822 124 3 0 chr3 151305295 151305577 -8294206 - Lx4A LINE L1 -388 6670 6388 4 1739 34 0 0 0 chr3 151305593 151305627 -8294156 + AT_rich Low_complexity Low_complexity 1 34 0 4 1739 240 111 0 0 chr3 151305974 151306010 -8293773 + (TA)n Simple_repeat Simple_repeat 1 36 0 4 1739 22 80 0 0 chr3 151306217 151306267 -8293516 + AT_rich Low_complexity Low_complexity 1 50 0 4 1739 226 263 17 50 chr3 151307352 151307412 -8292371 + ID4_ SINE ID 19 76 -7 4 1739 27 49 0 0 chr3 151308111 151308152 -8291631 + AT_rich Low_complexity Low_complexity 1 41 0 4 1739 424 140 0 39 chr3 151308271 151308375 -8291408 + (TG)n Simple_repeat Simple_repeat 1 100 0 4 1739 336 267 155 80 chr3 151308437 151308624 -8291159 - B4A SINE B4 -89 203 3 4 1739 213 108 0 0 chr3 151309444 151309481 -8290302 - MIRm SINE MIR -2 274 238 4 1739 279 284 35 35 chr3 151309763 151309876 -8289907 + RMER15 LTR ERVL 15 127 -448 4 1739 480 263 204 26 chr3 151309943 151310134 -8289649 + RMER15 LTR ERVL 336 560 -15 4 1739 475 305 23 0 chr3 151310141 151310269 -8289514 - MTE2a LTR MaLR -14 365 235 4 1739 2705 36 12 0 chr3 151310272 151310662 -8289121 + L1_Mus2 LINE L1 5536 5929 -637 4 1739 690 244 25 152 chr3 151310663 151310738 -8289045 - MTE2a LTR MaLR -138 241 192 4 1739 2351 56 56 0 chr3 151310738 151311041 -8288742 + RLTR46 LTR ERVK 1 320 0 4 1739 690 244 25 152 chr3 151311041 151311241 -8288542 - MTE2a LTR MaLR -188 191 1 4 1739 342 0 0 0 chr3 151311953 151311991 -8287792 + (TTTG)n Simple_repeat Simple_repeat 3 40 0 4 1739 302 288 0 0 chr3 151311996 151312062 -8287721 - ID4 SINE ID -13 70 5 4 1739 333 0 0 0 chr3 151312063 151312100 -8287683 + (GATTG)n Simple_repeat Simple_repeat 4 40 0 4 1739 315 274 45 54 chr3 151312102 151312214 -8287569 - B1F SINE Alu -16 133 23 4 1739 219 357 15 67 chr3 151312214 151312237 -8287546 - ID_B1 SINE B4 -16 208 81 4 1739 225 324 114 29 chr3 151312238 151312343 -8287440 - PB1D9 SINE Alu -1 119 6 4 1739 221 325 105 53 chr3 151313062 151313195 -8286588 + L2a LINE L2 3286 3425 -1 4 1739 1543 65 14 0 chr3 151315381 151315596 -8284187 - L1_Mus3 LINE L1 -1 6637 6420 4 1739 180 0 0 0 chr3 151315715 151315735 -8284048 + (TG)n Simple_repeat Simple_repeat 1 20 0 4 1739 533 77 22 0 chr3 151315735 151315826 -8283957 + (CAGAGA)n Simple_repeat Simple_repeat 2 94 0 4 1739 297 0 0 0 chr3 151318223 151318256 -8281527 + (CA)n Simple_repeat Simple_repeat 2 34 0 4 1739 31966 71 1 16 chr3 151318487 151323662 -8276121 + L1Md_F2 LINE L1 496 5586 -297 4 1739 7990 48 9 4 chr3 151323662 151324650 -8275133 + L1Md_F2 LINE L1 5587 6579 -3 4 1739 3905 75 43 4 chr3 151324724 151325259 -8274524 - L1Md_F2 LINE L1 -12 6570 6015 4 1739 22 56 0 0 chr3 151325327 151325363 -8274420 + AT_rich Low_complexity Low_complexity 1 36 0 4 1739 688 231 19 19 chr3 151325645 151325716 -8274067 + ID SINE ID 12 82 -142 4 1739 408 290 37 0 chr3 151325716 151325823 -8273960 + PB1D10 SINE Alu 1 111 -6 4 1739 22 0 0 0 chr3 151326267 151326289 -8273494 + GC_rich Low_complexity Low_complexity 1 22 0 4 1739 427 341 55 0 chr3 151327541 151327723 -8272060 + RMER15 LTR ERVL 371 562 -13 4 1739 195 297 53 26 chr3 151327824 151327900 -8271883 + L2a LINE L2 3066 3143 -283 4 1739 342 376 6 0 chr3 151328255 151328425 -8271358 + (TG)n Simple_repeat Simple_repeat 2 172 0 4 1739 252 0 0 0 chr3 151328454 151328482 -8271301 + (TC)n Simple_repeat Simple_repeat 1 28 0 4 1739 337 203 47 0 chr3 151328489 151328553 -8271230 - HAL1-3A_ME LINE L1 -824 2034 1968 4 1739 495 309 28 28 chr3 151329600 151329780 -8270003 - Tigger5 DNA MER2_type -2168 238 59 4 1739 447 92 0 0 chr3 151331151 151331216 -8268567 + (TG)n Simple_repeat Simple_repeat 2 66 0 4 1739 650 281 0 70 chr3 151331671 151331870 -8267913 + B3A SINE B2 7 191 -7 4 1739 26 0 0 0 chr3 151331944 151331970 -8267813 + AT_rich Low_complexity Low_complexity 1 26 0 4 1739 387 0 0 0 chr3 151332788 151332831 -8266952 + (CA)n Simple_repeat Simple_repeat 2 44 0 4 1739 329 320 128 31 chr3 151332920 151333146 -8266637 + Charlie20a DNA Charlie 11 258 -549 4 1739 812 311 22 18 chr3 151333144 151333422 -8266361 + B4A SINE B4 10 288 -4 4 1739 185 159 0 22 chr3 151333450 151333495 -8266288 + (CA)n Simple_repeat Simple_repeat 1 44 0 4 1739 257 137 0 38 chr3 151333536 151333589 -8266194 + G-rich Low_complexity Low_complexity 1 51 0 4 1739 576 278 89 75 chr3 151333610 151333824 -8265959 + MLT2B2 LTR ERVL 123 339 -176 4 1739 622 269 196 22 chr3 151333854 151334166 -8265617 - MLT1A1 LTR MaLR -42 366 1 4 1739 572 301 29 56 chr3 151334166 151334429 -8265354 + MLT2B2 LTR ERVL 323 551 -4 4 1739 1257 84 6 0 chr3 151334598 151334765 -8265018 + L1Md_F2 LINE L1 6415 6582 0 4 1739 215 348 103 17 chr3 151334930 151335047 -8264736 + L4 LINE RTE 1550 1676 -353 4 1739 434 308 37 49 chr3 151335080 151335112 -8264671 - RSINE1 SINE B4 -1 164 130 4 1739 942 99 0 0 chr3 151335112 151335274 -8264509 + (TG)n Simple_repeat Simple_repeat 2 163 0 4 1739 434 308 37 49 chr3 151335274 151335405 -8264378 - RSINE1 SINE B4 -36 129 3 4 1739 244 218 0 52 chr3 151335468 151335526 -8264257 + L1MA4 LINE L1 5677 5731 -1742 4 1739 38868 32 1 0 chr3 151335539 151342810 -8256973 - L1Md_T LINE L1 0 6585 1 4 1739 437 262 12 0 chr3 151342806 151342941 -8256842 + L1MA4 LINE L1 5690 5895 -405 4 1739 327 330 0 72 chr3 151343451 151343562 -8256221 - MLT1A1 LTR MaLR -91 317 215 4 1739 603 133 0 0 chr3 151343569 151343659 -8256124 + ORR1A4-int LTR MaLR 1060 1149 -814 4 1739 1157 163 0 14 chr3 151343662 151343874 -8255909 + ORR1A4-int LTR MaLR 1751 1959 -4 4 1739 1828 134 94 63 chr3 151343878 151344197 -8255586 + ORR1A4 LTR MaLR 1 329 0 4 1739 257 120 71 12 chr3 151345026 151345110 -8254673 + (TA)n Simple_repeat Simple_repeat 2 90 0 4 1739 805 269 29 19 chr3 151345124 151345329 -8254454 + B3 SINE B2 3 209 -7 4 1739 34913 65 2 6 chr3 151345475 151350648 -8249135 + L1Md_F3 LINE L1 441 5586 -297 4 1739 8717 35 10 2 chr3 151350648 151351636 -8248147 + L1Md_F3 LINE L1 5587 6582 -2 4 1739 326 263 25 34 chr3 151352624 151352726 -8247057 - PB1D7 SINE Alu -11 116 7 4 1739 206 265 39 48 chr3 151353019 151353122 -8246661 + GA-rich Low_complexity Low_complexity 2 103 0 4 1739 394 277 45 11 chr3 151353620 151353730 -8246053 - B1F SINE Alu -1 119 6 4 1739 382 366 0 36 chr3 151354689 151354828 -8244955 - RSINE1 SINE B4 -15 150 17 4 1739 743 272 122 36 chr3 151358441 151358826 -8240957 - Lx9 LINE L1 -222 7422 7005 4 1739 385 184 26 0 chr3 151358831 151358907 -8240876 - Lx9 LINE L1 -937 6707 6630 4 1739 30 59 0 0 chr3 151358911 151358962 -8240821 + AT_rich Low_complexity Low_complexity 1 51 0 4 1739 419 52 0 17 chr3 151359006 151359065 -8240718 + (TG)n Simple_repeat Simple_repeat 2 59 0 4 1739 322 320 24 0 chr3 151359148 151359273 -8240510 + L1MD3 LINE L1 7868 7995 0 4 1739 181 328 0 17 chr3 151359990 151360049 -8239734 - MIRb SINE MIR -154 114 57 4 1739 378 0 0 0 chr3 151361166 151361208 -8238575 + (TTGG)n Simple_repeat Simple_repeat 2 43 0 4 1739 189 0 0 0 chr3 151361216 151361237 -8238546 + (TTTTG)n Simple_repeat Simple_repeat 3 23 0 4 1739 361 337 102 71 chr3 151362122 151362486 -8237297 + MamGypLTR2b LTR Gypsy 546 920 -2 4 1739 4357 57 0 6 chr3 151365274 151365788 -8233995 + L1Md_F2 LINE L1 6070 6580 -2 4 1739 5281 62 11 0 chr3 151366527 151367161 -8232622 + L1_Mus2 LINE L1 5926 6566 0 4 1739 21 0 0 0 chr3 151367208 151367229 -8232554 + AT_rich Low_complexity Low_complexity 1 21 0 5 1739 400 206 46 9 chr3 151367245 151367353 -8232430 + Lx9 LINE L1 7532 7643 -1 5 1739 21 36 0 0 chr3 151367548 151367576 -8232207 + AT_rich Low_complexity Low_complexity 1 28 0 5 1739 251 250 163 70 chr3 151368042 151368128 -8231655 - B1_Mur1 SINE Alu -7 142 49 5 1739 3708 53 0 2 chr3 151368145 151368576 -8231207 + L1Md_F2 LINE L1 6134 6563 -19 5 1739 308 174 0 28 chr3 151368622 151368693 -8231090 + Lx6 LINE L1 7392 7460 0 5 1739 4237 74 14 0 chr3 151368989 151369544 -8230239 + MT2B2 LTR ERVL 1 563 -21 5 1739 977 236 15 0 chr3 151369876 151370071 -8229712 + B3 SINE B2 15 212 -4 5 1739 216 0 0 0 chr3 151370981 151371005 -8228778 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 5 1739 685 85 9 9 chr3 151371391 151371498 -8228285 + (GA)n Simple_repeat Simple_repeat 2 108 0 5 1739 327 290 21 11 chr3 151371629 151371723 -8228060 + MER58B DNA MER1_type 12 106 -235 5 1739 22 0 0 0 chr3 151372398 151372420 -8227363 + AT_rich Low_complexity Low_complexity 1 22 0 5 1739 195 100 0 0 chr3 151372571 151372601 -8227182 + (AATAG)n Simple_repeat Simple_repeat 3 32 0 5 1739 311 328 51 76 chr3 151372761 151373075 -8226708 + L1M5 LINE L1 2893 3198 -2948 5 1739 402 21 0 0 chr3 151373461 151373508 -8226275 + (TTA)n Simple_repeat Simple_repeat 2 48 0 5 1739 2282 287 48 60 chr3 151373896 151374517 -8225266 + L1_Rod LINE L1 448 1041 -6567 5 1739 1077 127 243 0 chr3 151374517 151374698 -8225085 - URR1A DNA MER1_type -1 225 1 5 1739 2282 287 46 53 chr3 151374698 151375034 -8224749 + L1_Rod LINE L1 1042 1395 -4452 5 1739 1111 175 49 13 chr3 151376904 151377130 -8222653 - MTD LTR MaLR -185 234 1 5 1739 381 93 0 0 chr3 151377185 151377239 -8222544 + (TTA)n Simple_repeat Simple_repeat 1 54 0 5 1739 2262 182 22 10 chr3 151377297 151377714 -8222069 - Lx2B LINE L1 -147 6853 6432 5 1739 532 307 19 152 chr3 151378038 151378307 -8221476 - ORR1E LTR MaLR -101 258 26 5 1739 290 321 115 52 chr3 151378330 151378599 -8221184 + MLT2B5 LTR ERVL 262 547 -8 5 1739 462 192 0 0 chr3 151379817 151379895 -8219888 - ORR1B2 LTR MaLR 0 367 290 5 1739 1193 263 40 15 chr3 151379895 151380223 -8219560 - Lx5 LINE L1 -121 6929 6594 5 1739 273 286 0 0 chr3 151380354 151380424 -8219359 + RLTR42-int LTR ERVK 1538 1607 -3915 5 1739 601 204 71 13 chr3 151380737 151380891 -8218892 + RLTR42-int LTR ERVK 1869 2031 -3491 5 1739 269 201 110 82 chr3 151381125 151381271 -8218512 + RLTR42-int LTR ERVK 2726 2875 -3262 5 1739 1305 189 68 59 chr3 151382069 151382652 -8217131 + Lx6 LINE L1 897 1405 -4472 5 1739 2221 113 3 0 chr3 151382652 151382970 -8216813 + ORR1A2 LTR MaLR 1 319 -8 5 1739 11689 141 49 9 chr3 151382976 151384862 -8214921 + ORR1A2-int LTR MaLR 3 1962 -1 5 1739 1667 100 44 4 chr3 151384886 151385138 -8214645 + ORR1A2 LTR MaLR 66 327 0 5 1739 3688 178 219 224 chr3 151385138 151385738 -8214045 + Lx6 LINE L1 1401 1808 -4069 5 1739 342 264 72 53 chr3 151385738 151385890 -8213893 - RNLTR23 LTR ERVK -10 632 478 5 1739 3688 178 219 224 chr3 151385890 151386475 -8213308 + Lx6 LINE L1 1809 2207 -3670 5 1739 2643 138 26 3 chr3 151386475 151386860 -8212923 + ORR1B1 LTR MaLR 1 394 0 5 1739 3688 178 219 224 chr3 151386860 151388052 -8211731 + Lx6 LINE L1 2208 3918 -1959 5 217 2651 163 32 20 chr3 151388028 151388535 -8211248 - L1_Mur3 LINE L1 -1466 4414 3902 5 1740 1944 151 87 19 chr3 151388527 151388939 -8210844 - L1_Mur3 LINE L1 -806 5074 4635 5 1740 539 237 25 6 chr3 151388935 151389092 -8210691 + Lx6 LINE L1 5024 5183 -697 5 1740 8072 210 37 13 chr3 151389093 151390967 -8208816 + Lx6 LINE L1 5467 7409 -51 5 1740 1905 97 57 4 chr3 151390967 151391246 -8208537 + RLTR27 LTR ERVK 1 294 -15 5 1740 318 85 0 21 chr3 151391635 151391683 -8208100 + HAL1-3A_ME LINE L1 1977 2023 -835 5 1740 399 21 0 0 chr3 151391687 151391735 -8208048 + (TGAG)n Simple_repeat Simple_repeat 4 51 0 5 1740 665 254 47 57 chr3 151391880 151392072 -8207711 + MTE2b LTR MaLR 1 190 -189 5 1740 426 39 0 0 chr3 151392229 151392281 -8207502 + (TTTTA)n Simple_repeat Simple_repeat 2 53 0 5 1740 300 120 0 0 chr3 151392506 151392556 -8207227 + (CA)n Simple_repeat Simple_repeat 1 50 0 5 1740 234 235 146 12 chr3 151392999 151393081 -8206702 + MLT1H2 LTR MaLR 392 484 -5 5 1740 2341 272 62 0 chr3 151393117 151393765 -8206018 - Lx6 LINE L1 -31 7429 6742 5 1740 408 20 0 0 chr3 151394604 151394653 -8205130 + (TG)n Simple_repeat Simple_repeat 2 50 0 5 1740 228 309 19 9 chr3 151394653 151394761 -8205022 + L1M2 LINE L1 5708 5816 -481 5 1740 638 313 12 12 chr3 151395605 151395770 -8204013 + B4A SINE B4 128 292 0 5 1740 4958 218 31 34 chr3 151396045 151396177 -8203606 + Lx7 LINE L1 4502 4635 -1245 5 1740 297 0 0 0 chr3 151396177 151396210 -8203573 + (TAAA)n Simple_repeat Simple_repeat 3 35 0 5 1740 4958 232 34 38 chr3 151396210 151398051 -8201732 + Lx7 LINE L1 4636 6462 -1234 5 1740 3005 252 34 22 chr3 151398589 151399420 -8200363 + Lx7 LINE L1 6460 7300 -396 5 1740 374 291 0 0 chr3 151399433 151399581 -8200202 + T-rich Low_complexity Low_complexity 1 148 0 5 1740 235 315 0 44 chr3 151399695 151399808 -8199975 + GA-rich Low_complexity Low_complexity 1 108 0 5 1740 26 30 0 0 chr3 151403457 151403490 -8196293 + AT_rich Low_complexity Low_complexity 1 33 0 5 1740 3460 59 36 17 chr3 151403619 151404085 -8195698 + IAPLTR2_Mm LTR ERVK 1 475 0 5 1740 560 310 104 78 chr3 151404093 151404631 -8195152 + L1MC5 LINE L1 6736 7287 -674 5 1740 562 244 7 37 chr3 151404789 151404925 -8194858 + RSINE1 SINE B4 5 136 -29 5 1740 348 83 0 0 chr3 151404930 151404978 -8194805 + (CA)n Simple_repeat Simple_repeat 1 48 0 5 1740 22 0 0 0 chr3 151405029 151405051 -8194732 + AT_rich Low_complexity Low_complexity 1 22 0 5 1740 676 71 18 0 chr3 151405088 151405200 -8194583 + (TAGA)n Simple_repeat Simple_repeat 4 117 0 5 1740 1881 183 51 80 chr3 151405259 151405444 -8194339 + RMER20B LTR ERVK 1 203 -424 5 1740 3591 70 6 12 chr3 151405444 151405936 -8193847 + L1_Mus3 LINE L1 6150 6638 0 5 1740 1881 183 51 80 chr3 151405936 151406201 -8193582 + RMER20B LTR ERVK 204 438 -189 5 1740 310 216 0 51 chr3 151406200 151406278 -8193505 + RMER20B LTR ERVK 540 613 -14 5 1740 313 297 20 33 chr3 151406311 151406464 -8193319 + L1MC5 LINE L1 7750 7900 -61 5 1740 1368 75 0 21 chr3 151406707 151406898 -8192885 + B2_Mm2 SINE B2 2 188 -7 5 1740 297 51 0 0 chr3 151407353 151407392 -8192391 + (CAAAAA)n Simple_repeat Simple_repeat 4 42 0 5 1740 669 271 131 14 chr3 151407410 151407655 -8192128 - MLT1A0 LTR MaLR -95 279 1 5 1740 2203 192 19 10 chr3 151407658 151408074 -8191709 + MTC LTR MaLR 2 421 0 5 1740 21 36 0 0 chr3 151408412 151408440 -8191343 + AT_rich Low_complexity Low_complexity 1 28 0 5 1740 812 251 160 50 chr3 151409094 151409413 -8190370 + ORR1E LTR MaLR 1 354 -5 5 1740 3913 148 25 2 chr3 151409889 151410534 -8189249 + Lx4B LINE L1 6317 6976 -82 5 1740 26 0 0 0 chr3 151410544 151410570 -8189213 + AT_rich Low_complexity Low_complexity 1 26 0 5 1740 22 0 0 0 chr3 151410969 151410991 -8188792 + AT_rich Low_complexity Low_complexity 1 22 0 5 1740 700 214 7 7 chr3 151411481 151411627 -8188156 + B1_Mur4 SINE Alu 1 146 -4 5 1740 202 210 69 69 chr3 151412030 151412117 -8187666 - L3 LINE CR1 -3610 879 793 5 1740 783 0 0 0 chr3 151413050 151413137 -8186646 + (TTC)n Simple_repeat Simple_repeat 2 88 0 5 1740 1259 41 0 0 chr3 151413505 151413652 -8186131 + B1_Mus1 SINE Alu 2 148 0 5 1740 22 0 0 0 chr3 151413659 151413681 -8186102 + AT_rich Low_complexity Low_complexity 1 22 0 5 1740 229 246 188 0 chr3 151414701 151414770 -8185013 - L2 LINE L2 -1269 2150 2069 5 1740 528 297 60 92 chr3 151415220 151415354 -8184429 + ORR1E LTR MaLR 53 168 -191 5 1740 3840 96 15 169 chr3 151415354 151416242 -8183541 + RMER17A LTR ERVK 1 751 0 5 1740 528 297 60 92 chr3 151416242 151416422 -8183361 + ORR1E LTR MaLR 169 357 -2 5 1740 198 0 0 0 chr3 151416744 151416766 -8183017 + (TC)n Simple_repeat Simple_repeat 2 23 0 5 1740 363 78 0 0 chr3 151416766 151416816 -8182967 + (TG)n Simple_repeat Simple_repeat 2 52 0 5 1740 558 156 25 0 chr3 151416816 151416938 -8182845 + Lx9 LINE L1 7513 7637 -7 5 1740 2196 95 13 7 chr3 151417099 151417406 -8182377 - RLTR27 LTR ERVK 0 309 1 5 1740 357 244 23 0 chr3 151417863 151417949 -8181834 + PB1D10 SINE Alu 9 96 -21 5 1740 1583 216 144 33 chr3 151418400 151418859 -8180924 + RLTR17 LTR ERVK 105 614 -78 5 1740 3491 198 37 34 chr3 151419951 151420716 -8179067 + RMER1A Other Other 249 1015 -15 5 1740 523 286 111 30 chr3 151420936 151421134 -8178649 + B3A SINE B2 1 214 -2 5 1740 1864 91 7 11 chr3 151421387 151421665 -8178118 + Lx LINE L1 6375 6651 -3 5 1740 21 0 0 0 chr3 151421665 151421686 -8178097 + AT_rich Low_complexity Low_complexity 1 21 0 5 1740 223 376 99 18 chr3 151421960 151422071 -8177712 - L2b LINE L2 -22 3353 3234 5 1740 210 258 132 29 chr3 151422193 151422261 -8177522 + B3A SINE B2 71 145 -53 5 1740 5417 124 17 54 chr3 151422878 151423815 -8175968 + RLTR13D6 LTR ERVK 1 902 0 5 1740 275 333 15 62 chr3 151424064 151424182 -8175601 - PB1D10 SINE Alu -2 115 5 5 1740 456 123 0 0 chr3 151424218 151424291 -8175492 + (CA)n Simple_repeat Simple_repeat 1 73 0 5 1740 238 334 30 43 chr3 151424737 151425008 -8174775 + L1MD1 LINE L1 5410 5675 -684 5 1740 296 274 81 36 chr3 151425041 151425264 -8174519 + L1MD1 LINE L1 5762 5994 -248 5 1740 1296 70 33 0 chr3 151426388 151426700 -8173083 + (TG)n Simple_repeat Simple_repeat 1 322 0 5 1740 1452 48 14 8 chr3 151426715 151427073 -8172710 + (TG)n Simple_repeat Simple_repeat 1 360 0 5 1740 369 0 0 0 chr3 151427257 151427298 -8172485 + (TTG)n Simple_repeat Simple_repeat 2 42 0 5 1740 867 35 198 0 chr3 151427298 151427414 -8172369 - B1_Mus1 SINE Alu -8 140 2 5 1740 2314 124 113 11 chr3 151427423 151427805 -8171978 - MTC LTR MaLR 0 421 1 5 1740 1594 42 0 0 chr3 151428589 151428778 -8171005 + B2_Mm1a SINE B2 1 189 -4 5 1740 249 318 53 53 chr3 151428859 151428972 -8170811 - B1_Mur1 SINE Alu 0 149 37 5 1740 285 336 48 76 chr3 151428998 151429249 -8170534 - MLT1E1A LTR MaLR -147 533 290 5 1740 243 272 37 0 chr3 151429474 151429555 -8170228 + (TTTA)n Simple_repeat Simple_repeat 3 86 0 5 1740 1855 190 43 40 chr3 151429855 151430250 -8169533 + RLTR13D6 LTR ERVK 2 397 -505 5 1740 12879 45 1 0 chr3 151430250 151431903 -8167880 + L1_Mm LINE L1 3984 5637 -246 5 1740 2320 138 40 67 chr3 151431904 151432354 -8167429 + RLTR13D6 LTR ERVK 465 902 0 5 1740 2051 108 17 0 chr3 151433610 151433906 -8165877 + ORR1A2 LTR MaLR 27 327 0 5 1740 369 242 215 15 chr3 151434239 151434369 -8165414 - LTR41 LTR ERVL -608 160 5 5 1740 230 250 26 26 chr3 151434396 151434639 -8165144 + GA-rich Low_complexity Low_complexity 1 243 0 6 1740 463 301 99 0 chr3 151434680 151434894 -8164889 + MLT1A0 LTR MaLR 1 257 -108 6 1740 279 251 0 0 chr3 151435011 151435097 -8164686 + L1ME3A LINE L1 5369 5454 -725 6 1740 662 313 102 42 chr3 151435530 151436526 -8163257 + L1MA4A LINE L1 4368 5451 -429 6 1740 617 311 42 0 chr3 151436555 151436819 -8162964 + L1MA4A LINE L1 5662 5936 -367 6 1740 349 285 120 22 chr3 151437681 151437868 -8161915 + L1ME3A LINE L1 5690 5894 -346 6 1740 273 321 80 29 chr3 151440398 151440536 -8159247 + B1F2 SINE Alu 2 146 -3 6 1740 3747 93 30 42 chr3 151440558 151441127 -8158656 + Lx2 LINE L1 6436 6997 0 6 1740 430 300 80 53 chr3 151441543 151441871 -8157912 - MLT1A0 LTR MaLR 0 365 1 6 1740 338 195 12 0 chr3 151441878 151441960 -8157823 + (CATATA)n Simple_repeat Simple_repeat 1 83 0 6 1740 262 333 96 111 chr3 151442075 151442210 -8157573 + RSINE1 SINE B4 2 134 -31 6 1740 4822 62 8 5 chr3 151442537 151443169 -8156614 - L1Md_F2 LINE L1 0 6582 5949 6 1740 7846 44 4 0 chr3 151443162 151444182 -8155601 + L1Md_F2 LINE L1 4929 5953 -629 6 1740 308 333 13 0 chr3 151444364 151444439 -8155344 + ID SINE ID 8 83 -141 6 1740 293 231 0 0 chr3 151444726 151444778 -8155005 - RSINE1 SINE B4 -111 54 3 6 1740 260 226 0 36 chr3 151445755 151445810 -8153973 - ORR1D2 LTR MaLR -317 53 1 6 1740 383 0 0 21 chr3 151446040 151446088 -8153695 + (TA)n Simple_repeat Simple_repeat 1 47 0 6 1740 750 271 84 66 chr3 151446409 151446454 -8153329 - ORR1D2 LTR MaLR -6 364 320 6 1740 3377 81 0 0 chr3 151446454 151446861 -8152922 + MTB_Mm LTR MaLR 1 407 0 6 1740 750 269 66 48 chr3 151446861 151447097 -8152686 - ORR1D2 LTR MaLR -51 319 77 6 1740 1840 98 0 0 chr3 151447098 151447342 -8152441 - L1_Mus4 LINE L1 0 6636 6393 6 1740 1219 68 6 0 chr3 151447347 151447508 -8152275 + L1_Mus4 LINE L1 6133 6294 -342 6 1740 622 225 58 20 chr3 151447508 151447680 -8152103 - ORR1E LTR MaLR -183 184 1 6 1740 962 32 194 0 chr3 151447789 151447913 -8151870 - B1_Mus1 SINE Alu 0 148 1 6 1740 21 0 0 0 chr3 151448326 151448347 -8151436 + AT_rich Low_complexity Low_complexity 1 21 0 6 1740 844 129 8 8 chr3 151449086 151449334 -8150449 + (CA)n Simple_repeat Simple_repeat 1 248 0 6 1740 466 88 54 48 chr3 151449349 151449517 -8150266 + (CA)n Simple_repeat Simple_repeat 1 169 0 6 1740 946 49 37 12 chr3 151449539 151449703 -8150080 + (CA)n Simple_repeat Simple_repeat 1 168 0 6 1740 1427 185 31 17 chr3 151450042 151450334 -8149449 - MTD LTR MaLR -123 296 1 6 1740 704 309 60 17 chr3 151450615 151450751 -8149032 - B4A SINE B4 -48 244 108 6 1740 417 54 0 0 chr3 151450751 151450807 -8148976 + (TG)n Simple_repeat Simple_repeat 2 57 0 6 1740 569 40 13 0 chr3 151450807 151450882 -8148901 + (TAGA)n Simple_repeat Simple_repeat 1 77 0 6 1740 704 309 60 17 chr3 151450882 151450978 -8148805 - B4A SINE B4 -185 107 2 6 1740 3261 115 58 28 chr3 151451116 151451808 -8147975 + RLTR13D4 LTR ERVK 1 1033 0 6 1740 183 80 0 0 chr3 151452325 151452350 -8147433 + (TA)n Simple_repeat Simple_repeat 2 26 0 6 1740 956 243 129 11 chr3 151452587 151452772 -8147011 - Lx7 LINE L1 -703 6993 6805 6 1740 1305 3 36 0 chr3 151452772 151453055 -8146728 + (GTGTG)n Simple_repeat Simple_repeat 1 293 0 6 1740 956 243 129 11 chr3 151453055 151453137 -8146646 - Lx7 LINE L1 -892 6804 6692 6 1740 1707 270 139 3 chr3 151453134 151453656 -8146127 + Lx7 LINE L1 6985 7569 -127 6 1740 377 20 0 20 chr3 151453656 151453707 -8146076 + (TG)n Simple_repeat Simple_repeat 2 51 0 6 1740 1707 270 139 3 chr3 151453707 151453797 -8145986 + Lx7 LINE L1 7570 7679 -17 6 1740 882 290 88 27 chr3 151454280 151454645 -8145138 + MLT1B LTR MaLR 2 388 -2 6 1740 636 281 79 35 chr3 151454879 151455248 -8144535 - L1MC LINE L1 -1518 4628 4244 6 1740 744 356 18 24 chr3 151456223 151456554 -8143229 - MLT1A LTR MaLR -45 329 1 6 1740 1246 68 0 0 chr3 151456726 151456872 -8142911 + B1_Mm SINE Alu 2 147 0 6 1740 189 0 0 0 chr3 151456872 151456893 -8142890 + (A)n Simple_repeat Simple_repeat 1 21 0 6 1740 451 272 92 65 chr3 151457090 151457455 -8142328 - L1MD3 LINE L1 -895 7100 6708 6 1740 339 25 0 0 chr3 151457951 151457991 -8141792 + (TG)n Simple_repeat Simple_repeat 2 41 0 6 1740 27 0 0 0 chr3 151458083 151458110 -8141673 + AT_rich Low_complexity Low_complexity 1 27 0 6 1740 189 0 0 0 chr3 151458288 151458309 -8141474 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 6 1740 209 320 61 10 chr3 151458922 151459020 -8140763 + MER5A DNA MER1_type 84 186 -3 6 1740 532 360 30 34 chr3 151459132 151459365 -8140418 + B4A SINE B4 57 288 -4 6 1740 218 238 0 24 chr3 151461945 151462027 -8137756 + (CATA)n Simple_repeat Simple_repeat 4 83 0 6 1740 232 175 0 0 chr3 151462415 151462455 -8137328 + B3 SINE B2 3 42 -174 6 1740 3677 177 35 20 chr3 151462459 151462838 -8136945 - RMER6D LTR ERVK -4 716 343 6 1740 634 24 24 0 chr3 151462838 151462922 -8136861 + (TC)n Simple_repeat Simple_repeat 2 87 0 6 1740 3677 177 35 20 chr3 151462922 151463227 -8136556 - RMER6D LTR ERVK -378 342 22 6 1740 267 191 0 0 chr3 151463271 151463318 -8136465 + B3 SINE B2 155 201 -15 6 1740 3006 33 30 0 chr3 151468036 151468372 -8131411 - ORR1A1 LTR MaLR 0 346 1 6 1740 408 67 0 0 chr3 151468923 151468983 -8130800 + (TG)n Simple_repeat Simple_repeat 1 60 0 6 1740 375 296 118 41 chr3 151469084 151469253 -8130530 - B4A SINE B4 -102 190 9 6 1740 341 279 139 0 chr3 151469631 151469753 -8130030 + B1F1 SINE Alu 2 140 -9 6 1740 306 116 0 0 chr3 151470246 151470289 -8129494 + ID2 SINE ID 2 44 -39 6 1740 2615 137 44 5 chr3 151470568 151470973 -8128810 + MTC LTR MaLR 1 421 0 6 1740 2994 68 100 0 chr3 151471132 151471502 -8128281 + MTB_Mm LTR MaLR 1 407 0 6 1740 273 310 33 66 chr3 151471737 151471858 -8127925 + PB1D9 SINE Alu 4 120 0 6 1740 284 264 0 11 chr3 151472155 151472243 -8127540 + (TG)n Simple_repeat Simple_repeat 2 88 0 6 1740 209 310 134 27 chr3 151472455 151472526 -8127257 - MIRb SINE MIR -61 207 131 6 1740 207 0 0 0 chr3 151472526 151472549 -8127234 + (TAAAA)n Simple_repeat Simple_repeat 2 24 0 6 1740 209 310 134 27 chr3 151472549 151472626 -8127157 - MIRb SINE MIR -138 130 43 6 1740 216 288 74 12 chr3 151472747 151472828 -8126955 - MIR SINE MIR -111 151 66 6 1740 328 243 0 0 chr3 151472828 151472898 -8126885 + B3A SINE B2 2 71 -127 6 1740 3058 47 21 3 chr3 151472891 151473279 -8126504 + MTB LTR MaLR 6 400 0 6 1740 324 295 8 82 chr3 151473280 151473402 -8126381 + B3 SINE B2 76 188 -28 6 1740 447 276 176 44 chr3 151473702 151473861 -8125922 + B3A SINE B2 2 181 -17 6 1740 282 106 0 0 chr3 151473862 151473909 -8125874 + (CA)n Simple_repeat Simple_repeat 1 47 0 6 1740 460 234 6 127 chr3 151474057 151474214 -8125569 - B1_Mur1 SINE Alu -1 148 11 6 1740 279 308 106 24 chr3 151474105 151474228 -8125555 - ID_B1 SINE B4 -17 207 75 6 1740 477 287 0 54 chr3 151475389 151475518 -8124265 - ID_B1 SINE B4 -15 209 88 6 1740 1201 65 0 0 chr3 151475615 151475753 -8124030 - B1_Mm SINE Alu -9 138 1 6 1740 582 328 93 32 chr3 151476328 151476574 -8123209 + B4A SINE B4 1 261 -31 6 1740 1189 77 0 0 chr3 151477021 151477164 -8122619 + B1_Mus2 SINE Alu 2 144 -3 6 1740 270 0 0 0 chr3 151477164 151477194 -8122589 + (TAAAA)n Simple_repeat Simple_repeat 2 31 0 6 1740 694 277 27 94 chr3 151477261 151477484 -8122299 - B3 SINE B2 -7 209 2 6 1740 1016 174 10 3 chr3 151477505 151477810 -8121973 + GA-rich Low_complexity Low_complexity 1 306 0 6 1740 1187 97 0 6 chr3 151477810 151477987 -8121796 + (GAAA)n Simple_repeat Simple_repeat 3 178 0 6 1740 339 208 83 0 chr3 151478287 151478359 -8121424 + B4 SINE B4 6 83 -209 6 1740 430 192 13 27 chr3 151478437 151478512 -8121271 + B4 SINE B4 200 273 -19 6 1740 243 317 12 0 chr3 151478522 151478604 -8121179 + (CA)n Simple_repeat Simple_repeat 2 84 0 6 1740 279 0 0 0 chr3 151481176 151481207 -8118576 + (TTTTG)n Simple_repeat Simple_repeat 3 33 0 6 1740 540 265 90 45 chr3 151481268 151481446 -8118337 + B3 SINE B2 1 186 -30 6 1740 360 0 0 0 chr3 151481463 151481503 -8118280 + (CA)n Simple_repeat Simple_repeat 2 41 0 6 1740 510 210 196 85 chr3 151481525 151481749 -8118034 + B4A SINE B4 44 292 0 6 1740 258 32 0 0 chr3 151483259 151483290 -8116493 + (GTTTG)n Simple_repeat Simple_repeat 2 32 0 6 1740 408 275 0 0 chr3 151483295 151483386 -8116397 - ID_B1 SINE B4 -16 208 118 6 1740 203 255 19 38 chr3 151483446 151483499 -8116284 + L3 LINE CR1 728 779 -3710 6 1740 50 42 0 0 chr3 151483546 151483617 -8116166 + AT_rich Low_complexity Low_complexity 1 71 0 6 1740 330 286 31 184 chr3 151486151 151486314 -8113469 + B4 SINE B4 80 217 -75 6 1740 748 178 0 58 chr3 151486185 151486322 -8113461 + B1_Mur2 SINE Alu 20 148 -1 6 1740 345 24 0 0 chr3 151486322 151486364 -8113419 + (TG)n Simple_repeat Simple_repeat 1 42 0 6 1740 495 0 0 0 chr3 151486364 151486418 -8113365 + (GA)n Simple_repeat Simple_repeat 1 55 0 6 1740 1116 90 14 0 chr3 151486482 151486626 -8113157 + B1_Mus1 SINE Alu 1 146 -2 6 1740 1426 17 6 16 chr3 151486626 151486808 -8112975 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 6 1740 7348 37 2 3 chr3 151487718 151488595 -8111188 - L1Md_F3 LINE L1 -14 6570 5724 6 1740 220 324 15 0 chr3 151489943 151490011 -8109772 + L2a LINE L2 3357 3425 -1 6 1740 378 277 88 25 chr3 151491514 151491673 -8108110 + MER121 Unknown Unknown 148 316 -96 6 1740 21 36 0 0 chr3 151491675 151491703 -8108080 + AT_rich Low_complexity Low_complexity 1 28 0 6 1740 231 345 152 41 chr3 151491942 151492232 -8107551 - LTR16A LTR ERVL -17 434 113 6 1740 555 335 62 24 chr3 151492340 151492548 -8107235 + ID_B1 SINE B4 2 217 -7 6 1740 494 70 14 0 chr3 151492577 151492648 -8107135 + (TAGA)n Simple_repeat Simple_repeat 1 72 0 6 1740 21 57 0 0 chr3 151492875 151492910 -8106873 + AT_rich Low_complexity Low_complexity 1 35 0 6 1740 701 259 24 82 chr3 151494153 151494323 -8105460 + B3A SINE B2 5 170 -28 6 1740 252 0 0 0 chr3 151494323 151494351 -8105432 + (CA)n Simple_repeat Simple_repeat 2 29 0 6 1740 701 259 24 82 chr3 151494351 151494386 -8105397 + B3A SINE B2 171 198 0 6 1740 246 32 0 0 chr3 151494414 151494445 -8105338 + (CA)n Simple_repeat Simple_repeat 2 32 0 6 1740 414 287 19 0 chr3 151495425 151495533 -8104250 + B1_Mur1 SINE Alu 1 110 -39 6 1740 338 309 32 24 chr3 151495533 151495548 -8104235 + ID_B1 SINE B4 82 205 -19 7 1740 396 0 0 0 chr3 151499379 151499423 -8100360 + (TC)n Simple_repeat Simple_repeat 1 44 0 7 1740 297 0 0 0 chr3 151499423 151499455 -8100328 + (CA)n Simple_repeat Simple_repeat 1 33 0 7 1740 27 0 0 0 chr3 151503482 151503509 -8096274 + AT_rich Low_complexity Low_complexity 1 27 0 1 1740 606 271 71 0 chr3 151503560 151503700 -8096083 - RSINE1 SINE B4 -13 152 3 2 1740 24 32 0 0 chr3 151504571 151504602 -8095181 + AT_rich Low_complexity Low_complexity 1 31 0 3 1740 460 313 118 45 chr3 151505025 151505339 -8094444 + MLT1C LTR MaLR 87 423 -44 4 1740 579 333 89 0 chr3 151505326 151505494 -8094289 - ID_B1 SINE B4 -41 183 1 5 1740 352 159 16 0 chr3 151505496 151505559 -8094224 + MLT1C LTR MaLR 404 467 0 6 1740 246 317 12 0 chr3 151505672 151505754 -8094029 + MER45R DNA Tip100 88 170 -1411 7 1740 401 304 57 14 chr3 151508348 151508558 -8091225 + L1MA6 LINE L1 6082 6300 0 8 1740 22 56 0 0 chr3 151509055 151509091 -8090692 + AT_rich Low_complexity Low_complexity 1 36 0 9 1740 280 366 31 48 chr3 151509472 151509699 -8090084 - MIR SINE MIR -19 243 21 1 1740 327 326 10 10 chr3 151510266 151510365 -8089418 + PB1D10 SINE Alu 12 110 -7 1 1740 276 297 0 0 chr3 151511040 151511114 -8088669 + (CA)n Simple_repeat Simple_repeat 1 74 0 1 1740 243 0 0 0 chr3 151511376 151511403 -8088380 + (CA)n Simple_repeat Simple_repeat 1 27 0 1 1740 2441 128 0 3 chr3 151512402 151512730 -8087053 + ORR1A2 LTR MaLR 1 327 0 1 1740 598 280 76 26 chr3 151513129 151513393 -8086390 + L1MA5 LINE L1 8 284 -6746 1 1740 189 74 0 0 chr3 151513465 151513492 -8086291 + (CACCC)n Simple_repeat Simple_repeat 5 31 0 1 1740 280 333 14 49 chr3 151513538 151513680 -8086103 + L1MA5 LINE L1 201 337 -6693 1 1740 658 233 73 14 chr3 151514624 151514842 -8084941 + L1MA5 LINE L1 3729 3959 -3141 1 1740 1058 286 102 25 chr3 151514850 151515338 -8084445 + L1MA5 LINE L1 5437 5962 -1141 1 1740 378 42 0 0 chr3 151515411 151515459 -8084324 + (GGGA)n Simple_repeat Simple_repeat 4 51 0 1 1740 969 266 74 91 chr3 151516072 151516158 -8083625 + L1MA5 LINE L1 6323 6437 -823 1 1740 225 279 59 0 chr3 151516158 151516226 -8083557 + ID4 SINE ID 3 74 -9 1 1740 969 266 74 91 chr3 151516226 151516560 -8083223 + L1MA5 LINE L1 6438 6763 -497 1 1740 982 238 9 23 chr3 151516560 151516779 -8083004 + B3 SINE B2 1 216 0 1 1740 969 266 74 91 chr3 151516779 151516928 -8082855 + L1MA5 LINE L1 6764 6883 -377 1 1740 277 318 119 69 chr3 151517083 151517343 -8082440 + B4 SINE B4 4 276 -16 2 1740 459 0 0 0 chr3 151517356 151517407 -8082376 + (CA)n Simple_repeat Simple_repeat 2 52 0 2 1740 325 217 76 0 chr3 151517519 151517611 -8082172 + L1MA5 LINE L1 7161 7259 -1 1 1740 2134 134 143 17 chr3 151517894 151518244 -8081539 + ORR1B1 LTR MaLR 1 394 0 2 1741 354 273 56 22 chr3 151519409 151519499 -8080284 - MIRb SINE MIR -89 179 87 2 1741 201 147 0 0 chr3 151521010 151521044 -8078739 + (TA)n Simple_repeat Simple_repeat 2 35 0 2 1741 23 54 0 0 chr3 151521887 151521924 -8077859 + AT_rich Low_complexity Low_complexity 1 37 0 2 1741 316 290 144 8 chr3 151522088 151522220 -8077563 + B3 SINE B2 11 160 -56 2 1741 420 111 0 0 chr3 151522225 151522288 -8077495 + (CA)n Simple_repeat Simple_repeat 2 64 0 2 1741 388 239 25 41 chr3 151523234 151523356 -8076427 + MER103 DNA DNA 46 165 -1 2 1741 290 268 121 8 chr3 151523470 151523594 -8076189 + L1M5 LINE L1 4106 4243 -1903 2 1741 486 221 31 47 chr3 151524301 151524429 -8075354 + Lx8 LINE L1 7184 7309 -164 3 1741 2570 130 14 0 chr3 151524432 151524793 -8074990 - ORR1B2 LTR MaLR -1 366 1 3 1741 22 56 0 0 chr3 151524797 151524833 -8074950 + AT_rich Low_complexity Low_complexity 1 36 0 3 1741 226 83 39 77 chr3 151525149 151525201 -8074582 + (CATA)n Simple_repeat Simple_repeat 3 52 0 3 1741 337 285 58 7 chr3 151525650 151525788 -8073995 - L2 LINE L2 -994 2425 2281 3 1741 5635 71 0 0 chr3 151526221 151526910 -8072873 + L1Md_F2 LINE L1 5894 6582 0 3 1741 1251 287 56 37 chr3 151527108 151527680 -8072103 - L1_Mur3 LINE L1 -7070 642 60 3 1741 1242 98 3 0 chr3 151528278 151528607 -8071176 + (GA)n Simple_repeat Simple_repeat 1 330 0 3 1741 780 84 0 0 chr3 151529196 151529303 -8070480 + B1_Mus1 SINE Alu 2 108 -40 3 1741 1879 154 46 19 chr3 151529306 151529633 -8070150 - RMER6A LTR ERVK -39 717 384 3 1741 1057 102 6 6 chr3 151529633 151529800 -8069983 + (TCTCCC)n Simple_repeat Simple_repeat 3 169 0 4 1741 1879 154 46 19 chr3 151529800 151529843 -8069940 - RMER6A LTR ERVK -373 383 338 3 1741 509 179 0 86 chr3 151529846 151529962 -8069821 - RMER6A LTR ERVK -650 106 1 3 1741 1059 106 43 0 chr3 151530014 151530155 -8069628 + B1_Mus2 SINE Alu 1 147 0 4 1741 811 203 19 19 chr3 151530166 151530327 -8069456 + B2_Mm2 SINE B2 1 161 -34 4 1741 941 133 0 6 chr3 151530327 151530486 -8069297 + (GAAA)n Simple_repeat Simple_repeat 1 158 0 4 1741 258 32 0 0 chr3 151530501 151530532 -8069251 + (GGGA)n Simple_repeat Simple_repeat 2 32 0 4 1741 353 282 120 55 chr3 151530566 151530874 -8068909 + L1MEg LINE L1 1606 1933 -4151 4 1741 352 365 122 8 chr3 151531013 151531275 -8068508 - L2 LINE L2 -1100 2319 2028 3 1741 240 350 109 53 chr3 151531345 151531629 -8068154 - L2 LINE L2 -1381 2038 1739 3 1741 1092 145 120 39 chr3 151531944 151532152 -8067631 + URR1B DNA MER1_type 1 225 0 4 1741 2679 201 31 0 chr3 151532556 151533064 -8066719 + RMER1B Other Other 328 851 -215 4 1741 436 299 25 70 chr3 151533863 151534104 -8065679 + MER121 Unknown Unknown 71 300 -112 4 1741 324 329 101 76 chr3 151534168 151534326 -8065457 + RSINE1 SINE B4 4 165 0 4 1741 415 151 0 21 chr3 151534326 151534421 -8065362 + (CA)n Simple_repeat Simple_repeat 1 93 0 5 1741 1010 269 28 32 chr3 151534906 151535156 -8064627 + B4 SINE B4 1 249 -43 5 1741 417 123 0 0 chr3 151535172 151535237 -8064546 + (CA)n Simple_repeat Simple_repeat 2 66 0 5 1741 3075 209 44 12 chr3 151536294 151536959 -8062824 - Lx9 LINE L1 -7 7637 6952 5 1741 645 34 11 0 chr3 151536953 151537042 -8062741 + L1Md_T LINE L1 6493 6582 0 5 1741 2544 219 5 43 chr3 151537040 151537599 -8062184 - Lx9 LINE L1 -695 6949 6412 5 1741 324 0 0 0 chr3 151538463 151538499 -8061284 + (TA)n Simple_repeat Simple_repeat 2 37 0 5 1741 286 208 186 0 chr3 151541242 151541259 -8058524 + PB1D9 SINE Alu 52 72 -48 5 1741 749 239 0 0 chr3 151541259 151541389 -8058394 + B1_Mur1 SINE Alu 2 131 -18 5 1741 286 167 0 0 chr3 151541389 151541436 -8058347 + PB1D9 SINE Alu 73 119 -1 5 1741 1618 234 61 47 chr3 151541782 151542292 -8057491 - RLTR40 LTR ERVK -62 755 239 5 1741 23 0 0 0 chr3 151542292 151542315 -8057468 + AT_rich Low_complexity Low_complexity 1 23 0 5 1741 866 227 35 26 chr3 151542377 151542603 -8057180 - RLTR40 LTR ERVK -570 247 20 5 1741 590 340 62 64 chr3 151543144 151543596 -8056187 + RMER5 LTR ERV1 81 531 -3 6 1741 610 307 0 41 chr3 151544254 151544424 -8055359 + RSINE1 SINE B4 3 165 0 6 1741 711 338 13 26 chr3 151544531 151544765 -8055018 + B4A SINE B4 2 232 -60 6 1741 635 238 74 7 chr3 151544760 151544908 -8054875 + B3 SINE B2 9 166 -50 6 1741 291 71 0 0 chr3 151544908 151544950 -8054833 + (CA)n Simple_repeat Simple_repeat 1 42 0 6 1741 292 240 97 97 chr3 151544950 151544977 -8054806 + B2_Mm1a SINE B2 159 184 -9 6 1741 2867 203 45 55 chr3 151545012 151545634 -8054149 + RMER1C Other Other 590 1206 -136 6 1741 1180 86 11 0 chr3 151545634 151545809 -8053974 + (TTC)n Simple_repeat Simple_repeat 2 178 0 6 1741 2867 203 45 55 chr3 151545809 151545828 -8053955 + RMER1C Other Other 1207 1225 -117 6 1741 372 128 39 0 chr3 151545828 151545906 -8053877 + CT-rich Low_complexity Low_complexity 3 83 0 6 1741 226 217 253 0 chr3 151545908 151545991 -8053792 + RMER1C Other Other 1201 1304 -38 6 1741 300 295 62 10 chr3 151545993 151546089 -8053694 + B4A SINE B4 188 288 -4 6 1741 21 36 0 0 chr3 151546164 151546192 -8053591 + AT_rich Low_complexity Low_complexity 1 28 0 7 1741 21 57 0 0 chr3 151546308 151546343 -8053440 + AT_rich Low_complexity Low_complexity 1 35 0 7 1741 377 196 135 42 chr3 151546604 151546700 -8053083 - PB1D10 SINE Alu -4 113 9 7 1741 1389 271 63 17 chr3 151547681 151548154 -8051629 + RMER5 LTR ERV1 40 534 0 7 1741 1533 305 92 13 chr3 151548214 151548768 -8051015 + Tigger5 DNA MER2_type 143 740 -1666 7 1741 454 297 47 79 chr3 151548795 151548985 -8050798 + B4A SINE B4 109 292 0 7 1741 277 354 28 84 chr3 151549102 151549244 -8050539 + B4 SINE B4 39 172 -120 7 1741 3941 83 4 18 chr3 151549694 151549878 -8049905 + Lx3_Mus LINE L1 6502 6685 -324 7 1741 4592 26 0 0 chr3 151549878 151550371 -8049412 + MT2_Mm LTR ERVL 1 493 0 7 1741 3941 83 4 18 chr3 151550371 151550701 -8049082 + Lx3_Mus LINE L1 6686 7009 0 7 1741 1108 167 222 27 chr3 151551064 151551402 -8048381 - Lx9 LINE L1 -2 7642 7239 7 1741 624 271 136 50 chr3 151551403 151551764 -8048019 + L1MA5 LINE L1 5523 5914 -386 8 1741 5820 120 41 6 chr3 151552974 151553885 -8045898 - RMER17B LTR ERVK 0 958 16 8 1741 486 0 0 0 chr3 151554027 151554081 -8045702 + (TC)n Simple_repeat Simple_repeat 1 54 0 8 1741 320 271 98 0 chr3 151554151 151554273 -8045510 + L1M2 LINE L1 5422 5555 -745 8 1741 198 339 32 0 chr3 151555438 151555500 -8044283 + L2b LINE L2 3307 3370 -5 8 1741 192 354 30 30 chr3 151556535 151556666 -8043117 - L2 LINE L2 -523 2896 2766 8 1741 248 294 81 12 chr3 151556746 151556832 -8042951 + MIRm SINE MIR 183 274 -2 8 1741 359 206 45 8 chr3 151558670 151558802 -8040981 + CT-rich Low_complexity Low_complexity 2 138 0 8 1741 263 245 28 0 chr3 151558811 151558888 -8040895 - B1_Mm SINE Alu -6 114 30 8 1741 2005 134 38 52 chr3 151559683 151560029 -8039754 - Lx LINE L1 -6 6648 6308 8 1741 513 115 0 0 chr3 151560730 151560808 -8038975 + (TG)n Simple_repeat Simple_repeat 2 79 0 9 1741 696 191 11 17 chr3 151561239 151561385 -8038398 + GA-rich Low_complexity Low_complexity 1 145 0 9 1741 1550 6 6 0 chr3 151561385 151561564 -8038219 + (GGAGA)n Simple_repeat Simple_repeat 1 180 0 9 1741 696 191 11 17 chr3 151561564 151561598 -8038185 + polypurine Low_complexity Low_complexity 146 179 0 9 1741 923 0 0 9 chr3 151561615 151561723 -8038060 + (GAGAA)n Simple_repeat Simple_repeat 1 107 0 9 1741 198 71 0 0 chr3 151561802 151561830 -8037953 + (TG)n Simple_repeat Simple_repeat 1 28 0 9 1741 423 0 0 0 chr3 151561830 151561876 -8037907 + (GA)n Simple_repeat Simple_repeat 1 47 0 9 1741 914 283 105 15 chr3 151561979 151562572 -8037211 - L1MA4 LINE L1 -17 6283 5610 9 1741 1932 284 62 32 chr3 151562604 151563426 -8036357 - L1MA4 LINE L1 -1005 5138 4292 9 1741 564 216 146 23 chr3 151563979 151564150 -8035633 - L1MA4 LINE L1 -1892 4251 4060 9 1741 213 262 0 62 chr3 151564355 151564420 -8035363 - MIRc SINE MIR -118 150 90 9 1741 1144 72 0 16 chr3 151564828 151565011 -8034772 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 9 1741 234 247 16 198 chr3 151566937 151566955 -8032828 - PB1D7 SINE Alu 0 120 107 1 1741 186 71 0 0 chr3 151566955 151566983 -8032800 + (GTTTG)n Simple_repeat Simple_repeat 2 29 0 1 1741 234 247 16 198 chr3 151566983 151567085 -8032698 - PB1D7 SINE Alu -14 106 22 1 1741 539 306 89 34 chr3 151566986 151567165 -8032618 - ID_B1 SINE B4 -14 210 22 1 1741 1685 298 96 39 chr3 151568202 151569402 -8030381 + L1MB5 LINE L1 4869 6138 -36 1 1741 224 195 0 0 chr3 151569408 151569449 -8030334 + (CA)n Simple_repeat Simple_repeat 1 41 0 1 1741 201 365 0 56 chr3 151569913 151570003 -8029780 + MIR SINE MIR 82 166 -96 1 1741 755 268 98 89 chr3 151570719 151571067 -8028716 - ORR1E LTR MaLR -6 353 3 1 1741 380 268 28 154 chr3 151571732 151571979 -8027804 - MER20 DNA MER1_type -3 216 1 1 1741 292 243 25 63 chr3 151572868 151572947 -8026836 - ID_B1 SINE B4 -132 92 17 1 1741 244 284 9 104 chr3 151572967 151573073 -8026710 - L2a LINE L2 -27 3399 3304 1 1741 5094 102 13 13 chr3 151574068 151574766 -8025017 + Lx2 LINE L1 6300 6997 0 1 1741 257 100 20 0 chr3 151576459 151576509 -8023274 + (TTTTTG)n Simple_repeat Simple_repeat 4 54 0 1 1741 1169 70 42 0 chr3 151576519 151576661 -8023122 - B1_Mus1 SINE Alu 0 148 1 1 1741 690 312 88 73 chr3 151577651 151578073 -8021710 - MLT1G1 LTR MaLR -4 575 148 1 1741 12309 134 32 17 chr3 151578503 151580610 -8019173 - L1_Mur2 LINE L1 -1674 4203 2066 1 1741 597 331 48 53 chr3 151580609 151581304 -8018479 - L1M2 LINE L1 -3295 2848 2158 1 1741 10463 149 274 33 chr3 151581315 151584330 -8015453 + Lx2 LINE L1 755 4667 -1216 1 1741 1238 55 0 14 chr3 151584330 151584478 -8015305 - B1_Mus1 SINE Alu -2 146 1 1 1741 10463 199 102 69 chr3 151584478 151587209 -8012574 + Lx2 LINE L1 3707 6432 -565 1 1741 626 71 160 10 chr3 151587210 151587310 -8012473 + Lx2 LINE L1 6540 6654 0 1 1741 5545 163 12 23 chr3 151587327 151588245 -8011538 + RMER13B LTR ERVK 1 908 0 1 1741 201 226 0 31 chr3 151588320 151588384 -8011399 + T-rich Low_complexity Low_complexity 4 65 0 1 1741 2559 213 199 16 chr3 151588441 151589139 -8010644 - RMER1B Other Other -14 1052 227 1 1741 3772 195 98 49 chr3 151589155 151590115 -8009668 - RLTR25B LTR ERVK 0 1028 22 1 1741 1174 278 26 22 chr3 151590122 151590635 -8009148 - RMER1C Other Other -565 777 164 1 1741 601 302 67 30 chr3 151591518 151591818 -8007965 - Lx8 LINE L1 -6 7467 7157 1 1741 23 0 0 0 chr3 151591830 151591853 -8007930 + AT_rich Low_complexity Low_complexity 1 23 0 1 1741 233 320 107 70 chr3 151591971 151591986 -8007797 - MLT1C LTR MaLR -92 375 355 1 1741 291 225 59 14 chr3 151591986 151592077 -8007706 - MLT2B2 LTR ERVL -367 187 92 1 1741 233 320 107 70 chr3 151592077 151592270 -8007513 - MLT1C LTR MaLR -92 354 66 1 1741 4528 79 5 2 chr3 151592803 151593372 -8006411 + L1_Mus3 LINE L1 6065 6635 -3 1 1741 25 0 0 0 chr3 151594630 151594655 -8005128 + AT_rich Low_complexity Low_complexity 1 25 0 1 1741 6773 174 63 24 chr3 151594655 151596361 -8003422 + Lx7 LINE L1 298 2067 -3813 1 1741 192 77 0 0 chr3 151596361 151596387 -8003396 + (CA)n Simple_repeat Simple_repeat 2 27 0 1 1741 6773 163 60 17 chr3 151596387 151596938 -8002845 + Lx7 LINE L1 2068 2637 -3243 1 1741 881 220 31 42 chr3 151596949 151597210 -8002573 + RLTR22_Mur LTR ERVK 7 264 -1584 1 1741 4810 158 32 74 chr3 151597215 151597305 -8002478 + Lx7 LINE L1 4907 4989 -891 1 1741 1202 89 0 0 chr3 151597305 151597451 -8002332 + B1_Mus2 SINE Alu 2 147 0 1 1741 4810 158 32 74 chr3 151597451 151598018 -8001765 + Lx7 LINE L1 4990 5529 -351 1 1741 3595 33 2 0 chr3 151598018 151598413 -8001370 - MTA_Mm LTR MaLR 0 396 1 1 1741 8643 191 30 29 chr3 151598413 151600214 -7999569 + Lx7 LINE L1 5530 7349 -347 1 1741 338 195 12 0 chr3 151600235 151600317 -7999466 + T-rich Low_complexity Low_complexity 2 84 0 1 1741 1550 178 39 45 chr3 151600335 151600378 -7999405 + Lx7 LINE L1 7341 7387 -309 1 1741 663 13 0 0 chr3 151600378 151600454 -7999329 + (TG)n Simple_repeat Simple_repeat 2 77 0 1 1741 1550 178 39 45 chr3 151600454 151600768 -7999015 + Lx7 LINE L1 7388 7695 -1 1 1741 25 0 0 0 chr3 151600774 151600799 -7998984 + AT_rich Low_complexity Low_complexity 1 25 0 1 1741 305 0 50 0 chr3 151601047 151601087 -7998696 + (TTTTG)n Simple_repeat Simple_repeat 4 45 0 1 1741 25 51 0 0 chr3 151602262 151602301 -7997482 + AT_rich Low_complexity Low_complexity 1 39 0 1 1741 237 33 0 0 chr3 151603419 151603449 -7996334 + (CA)n Simple_repeat Simple_repeat 2 31 0 1 1741 303 219 15 15 chr3 151604224 151604289 -7995494 - ID4 SINE ID -12 71 7 1 1741 312 288 26 26 chr3 151605264 151605378 -7994405 + GA-rich Low_complexity Low_complexity 1 114 0 1 1741 2632 52 3 18 chr3 151605832 151606162 -7993621 - L1_Mus1 LINE L1 -1 6566 6242 1 1741 647 276 146 89 chr3 151606559 151607033 -7992750 + MLT1D LTR MaLR 1 501 -4 1 1741 423 0 0 0 chr3 151607056 151607103 -7992680 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 1741 340 294 11 21 chr3 151607120 151607214 -7992569 + B4A SINE B4 5 97 -195 1 1741 593 363 10 15 chr3 151607463 151607667 -7992116 + B4 SINE B4 85 287 -5 1 1741 702 277 130 27 chr3 151607905 151608205 -7991578 + LTR82A LTR ERVL 244 574 -298 1 1741 236 346 80 11 chr3 151608394 151608581 -7991202 + LTR82A LTR ERVL 672 871 -1 1 1741 189 340 114 80 chr3 151609715 151609916 -7989867 + L2b LINE L2 3009 3216 -159 1 1741 3734 204 99 8 chr3 151609983 151610101 -7989682 - Lx9 LINE L1 -6 7638 7489 1 1741 720 64 0 0 chr3 151610101 151610195 -7989588 + (TG)n Simple_repeat Simple_repeat 2 95 0 1 1741 3734 204 99 8 chr3 151610195 151610934 -7988849 - Lx9 LINE L1 -156 7488 6703 1 1741 1911 247 34 28 chr3 151610934 151611405 -7988378 - RMER19C LTR ERVK 0 611 138 1 1741 1923 237 5 27 chr3 151611444 151611856 -7987927 - Lx9 LINE L1 -936 6708 6306 1 1741 688 316 44 76 chr3 151612343 151612693 -7987090 + MTEb LTR MaLR 6 379 0 1 1741 331 347 30 49 chr3 151612820 151613000 -7986783 + MLT1D LTR MaLR 24 199 -306 1 1741 456 252 17 8 chr3 151613000 151613120 -7986663 + PB1 SINE Alu 1 121 -6 1 1741 557 298 71 39 chr3 151613133 151613416 -7986367 + MLT1D LTR MaLR 183 474 -31 1 1741 744 42 0 0 chr3 151613492 151613588 -7986195 + (TG)n Simple_repeat Simple_repeat 2 97 0 1 1741 466 283 59 174 chr3 151613589 151613893 -7985890 - B4A SINE B4 -22 270 2 1 1741 42070 8 0 1 chr3 151614003 151621192 -7978591 - L1Md_A LINE L1 0 6582 1 1 1741 759 239 87 81 chr3 151621540 151621928 -7977855 - MTE2a LTR MaLR -20 399 1 1 1741 39307 8 0 1 chr3 151622972 151629087 -7970696 + L1Md_A LINE L1 1 5586 -297 1 1741 9224 2 0 0 chr3 151629087 151630083 -7969700 + L1Md_A LINE L1 5587 6582 0 1 1741 650 24 0 24 chr3 151630229 151630314 -7969469 + (TCTCCC)n Simple_repeat Simple_repeat 3 85 0 1 1741 774 279 35 9 chr3 151630548 151630779 -7969004 + ORR1E LTR MaLR 1 237 -122 1 1741 240 242 32 0 chr3 151630870 151630932 -7968851 + ORR1E LTR MaLR 316 379 0 1 1741 563 253 153 6 chr3 151632418 151632601 -7967182 - B3 SINE B2 -6 210 1 1 1741 281 322 7 77 chr3 151632787 151632803 -7966980 + B4A SINE B4 76 80 -212 1 1741 710 211 7 0 chr3 151632803 151632945 -7966838 + B1_Mur4 SINE Alu 3 145 -5 1 1741 279 0 0 0 chr3 151632999 151633030 -7966753 + (GA)n Simple_repeat Simple_repeat 2 32 0 1 1741 406 324 100 55 chr3 151633124 151633594 -7966189 - MLT1D LTR MaLR -24 481 6 1 1741 4281 127 101 5 chr3 151633877 151634549 -7965234 - RMER19A LTR ERVK 0 737 1 1 1741 823 135 0 12 chr3 151634766 151634938 -7964845 + (CA)n Simple_repeat Simple_repeat 2 171 0 1 1741 23 0 0 0 chr3 151634957 151634980 -7964803 + AT_rich Low_complexity Low_complexity 1 23 0 1 1741 380 305 32 83 chr3 151635003 151635454 -7964329 + L1M4 LINE L1 1242 1671 -4974 1 1741 286 271 74 25 chr3 151635517 151635638 -7964145 + L1M4 LINE L1 1801 1927 -4822 1 1741 279 0 0 0 chr3 151635681 151635712 -7964071 + (TGG)n Simple_repeat Simple_repeat 1 31 0 1 1741 1112 326 142 39 chr3 151636750 151637392 -7962391 - MLT2B5 LTR ERVL 0 717 10 1 1741 1352 202 64 25 chr3 151638760 151639120 -7960663 + ORR1D1 LTR MaLR 1 374 0 1 1741 3847 167 28 55 chr3 151641930 151642679 -7957104 - RMER1B Other Other -5 1061 13 1 1741 1053 229 29 0 chr3 151643008 151643213 -7956570 + B3 SINE B2 1 211 -5 1 1741 263 257 115 32 chr3 151643349 151643506 -7956277 + L1MC4a LINE L1 7449 7618 -264 1 1741 1054 50 0 0 chr3 151643842 151643981 -7955802 + B1_Mus2 SINE Alu 9 147 0 1 1741 248 266 80 37 chr3 151644295 151644452 -7955331 + RLTR18 LTR ERVK 79 247 -265 1 1741 1016 174 4 151 chr3 151644451 151644729 -7955054 - RMER19C LTR ERVK -73 538 302 1 1741 824 235 22 59 chr3 151645140 151645468 -7954315 + RMER19C LTR ERVK 1 279 -332 1 1741 684 340 5 0 chr3 151645513 151645725 -7954058 + RMER19C LTR ERVK 223 435 -176 1 1741 496 138 11 0 chr3 151645721 151645808 -7953975 + RMER19B LTR ERVK 815 902 0 1 1741 1112 178 9 19 chr3 151646586 151646798 -7952985 + ORR1B2 LTR MaLR 158 367 0 1 1741 326 231 254 0 chr3 151646854 151646992 -7952791 + L1M2 LINE L1 5412 5584 -716 1 1741 8121 128 19 42 chr3 151646995 151649124 -7950659 + L1Md_F LINE L1 439 2420 -1497 1 1741 198 0 0 0 chr3 151649124 151649146 -7950637 + (GGAA)n Simple_repeat Simple_repeat 4 25 0 1 1741 254 296 0 48 chr3 151649161 151649264 -7950519 + A-rich Low_complexity Low_complexity 2 99 0 1 1741 2120 126 79 11 chr3 151649305 151649674 -7950109 + ORR1B1 LTR MaLR 1 394 0 1 1741 251 210 65 0 chr3 151649889 151649951 -7949832 - ID4_ SINE ID -3 80 15 1 1742 415 287 143 6 chr3 151650594 151650762 -7949021 + B3A SINE B2 1 191 -7 1 1742 742 178 183 6 chr3 151650781 151650956 -7948827 - B3 SINE B2 -3 213 8 1 1742 417 20 0 0 chr3 151651054 151651104 -7948679 + (TG)n Simple_repeat Simple_repeat 1 50 0 1 1742 452 236 70 79 chr3 151651824 151652188 -7947595 - L1M4 LINE L1 -629 5549 5196 1 1742 553 200 153 8 chr3 151652486 151652617 -7947166 - B1_Mur4 SINE Alu 0 150 1 1 1742 604 254 165 16 chr3 151652619 151652935 -7946848 - L1MA9 LINE L1 -184 6128 5766 1 1742 3421 35 2 2 chr3 151653078 151653474 -7946309 + MTA_Mm LTR MaLR 1 396 0 1 1742 392 329 84 21 chr3 151653478 151653717 -7946066 + ERVL-E-int LTR ERVL 4306 4559 -1108 1 1742 302 290 88 57 chr3 151653712 151653906 -7945877 + ERVL-E-int LTR ERVL 5427 5626 -41 1 1742 659 290 28 52 chr3 151654607 151654818 -7944965 + B3A SINE B2 10 215 -1 1 1742 343 227 223 28 chr3 151656426 151656666 -7943117 + ERVL-B4-int LTR ERVL 2179 2633 -3128 1 1742 907 84 129 8 chr3 151656826 151656958 -7942825 + B1_Mus1 SINE Alu 1 148 0 1 1742 516 283 80 86 chr3 151657079 151657415 -7942368 - Lx9 LINE L1 -45 7599 7266 2 1742 612 146 0 0 chr3 151657931 151658034 -7941749 + (GA)n Simple_repeat Simple_repeat 2 104 0 2 1742 263 316 48 54 chr3 151658346 151658493 -7941290 + MLT1H2 LTR MaLR 82 227 -262 2 1742 307 281 63 28 chr3 151659205 151659348 -7940435 + L1M5 LINE L1 3121 3268 -2878 2 1742 1195 258 85 130 chr3 151659351 151659974 -7939809 + Lx8 LINE L1 6867 7461 -12 2 1742 281 185 15 0 chr3 151660647 151660712 -7939071 + (CA)n Simple_repeat Simple_repeat 2 67 0 2 1742 198 299 24 57 chr3 151661454 151661578 -7938205 - MIRb SINE MIR -58 210 91 2 1742 243 302 53 70 chr3 151661994 151662108 -7937675 - Charlie8 DNA MER1_type -1408 1020 909 2 1742 837 235 34 5 chr3 151663448 151663653 -7936130 + B3 SINE B2 1 211 -5 2 1742 542 267 17 0 chr3 151663670 151663786 -7935997 + Lx7 LINE L1 6585 6702 -994 2 1742 225 182 0 22 chr3 151663786 151663831 -7935952 + RLTR13C2 LTR ERVK 261 304 -504 2 1742 2184 267 86 25 chr3 151663831 151664259 -7935524 + Lx8 LINE L1 6758 7209 -264 2 1742 2749 127 137 25 chr3 151664259 151664783 -7935000 + RMER4B LTR ERVK 1 583 -2 2 1742 2184 267 86 25 chr3 151664783 151665027 -7934756 + Lx8 LINE L1 7210 7471 -2 2 1742 496 239 145 10 chr3 151665269 151665476 -7934307 + B4A SINE B4 58 292 0 2 1742 328 331 92 41 chr3 151665714 151666029 -7933754 - MLT1I LTR MaLR -4 407 77 2 1742 1063 86 0 14 chr3 151666487 151666629 -7933154 + B1_Mur3 SINE Alu 1 140 -9 2 1742 1018 80 13 0 chr3 151666629 151666779 -7933004 + (GGAAA)n Simple_repeat Simple_repeat 3 154 0 2 1742 209 33 33 0 chr3 151666863 151666893 -7932890 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2 1742 425 289 82 8 chr3 151666908 151667030 -7932753 - RSINE1 SINE B4 -24 141 11 2 1742 612 323 7 0 chr3 151667105 151667260 -7932523 + B3A SINE B2 1 156 -42 2 1742 285 29 0 0 chr3 151667263 151667297 -7932486 + (CA)n Simple_repeat Simple_repeat 2 35 0 2 1742 23 92 0 0 chr3 151667297 151667362 -7932421 + AT_rich Low_complexity Low_complexity 1 65 0 2 1742 306 241 12 24 chr3 151667878 151667963 -7931820 + GA-rich Low_complexity Low_complexity 2 85 0 2 1742 2703 97 21 33 chr3 151669070 151669497 -7930286 + BGLII_Mus LTR ERVK 1 422 0 2 1742 394 360 0 0 chr3 151671084 151671262 -7928521 + MYSERV6-int LTR ERVK 200 377 -6173 2 1742 3493 289 52 37 chr3 151671270 151672538 -7927245 + MYSERV6-int LTR ERVK 938 2224 -6735 2 1742 1321 255 68 12 chr3 151672541 151672866 -7926917 + MYSERV-int LTR ERVK 4076 4418 -2132 2 1742 331 263 54 38 chr3 151672910 151673127 -7926656 + MYSERV-int LTR ERVK 4540 4626 -1924 2 1742 2985 72 9 28 chr3 151673136 151673565 -7926218 - BGLII LTR ERVK 0 421 1 2 1742 2143 204 88 57 chr3 151673568 151674478 -7925305 + MYSERV16_I-int LTR ERVK 427 2041 -801 2 1742 17335 78 35 11 chr3 151674478 151677553 -7922230 + Lx3_Mus LINE L1 538 3701 -2185 2 1742 2469 54 116 11 chr3 151677553 151677906 -7921877 - RLTR10 LTR ERVK 0 390 1 2 1742 14057 20 3 5 chr3 151677908 151679487 -7920296 - RLTR10-int LTR ERVK -3 1984 409 2 1742 2144 35 4 0 chr3 151679486 151679741 -7920042 - RLTR10-int LTR ERVK -1691 296 41 2 1742 2889 51 40 8 chr3 151679753 151680129 -7919654 - RLTR10 LTR ERVK -2 388 1 2 1742 9696 162 19 44 chr3 151680129 151683541 -7916242 + Lx3_Mus LINE L1 3693 7001 -8 2 1742 287 264 83 19 chr3 151683764 151683872 -7915911 - MTE2b LTR MaLR -14 365 251 2 1742 226 286 75 38 chr3 151684052 151684132 -7915651 - MTE2b LTR MaLR -271 88 6 2 1742 272 260 60 112 chr3 151684233 151684438 -7915345 + LTR85a LTR Gypsy? 247 530 -254 2 1742 252 0 0 0 chr3 151685718 151685746 -7914037 + (TG)n Simple_repeat Simple_repeat 2 29 0 2 1742 391 309 19 9 chr3 151686787 151686895 -7912888 - PB1 SINE Alu -5 122 14 2 1742 244 331 137 43 chr3 151686789 151686928 -7912855 - ID_B1 SINE B4 -8 216 65 2 1742 509 281 49 56 chr3 151687237 151687399 -7912384 + RSINE1 SINE B4 3 163 -2 2 1742 703 251 29 18 chr3 151687455 151687625 -7912158 + B3A SINE B2 1 172 -26 2 1742 402 21 0 0 chr3 151687628 151687675 -7912108 + (CA)n Simple_repeat Simple_repeat 2 48 0 2 1742 935 280 13 76 chr3 151688767 151689084 -7910699 + MTE2a LTR MaLR 1 297 -82 2 1742 495 258 83 0 chr3 151689262 151689394 -7910389 + ID_B1 SINE B4 82 224 0 2 1742 474 18 0 0 chr3 151689466 151689521 -7910262 + (GA)n Simple_repeat Simple_repeat 1 55 0 2 1742 756 86 0 0 chr3 151689521 151689626 -7910157 + (GGAA)n Simple_repeat Simple_repeat 4 108 0 2 1742 871 331 64 6 chr3 151689703 151690061 -7909722 + MTE2b LTR MaLR 1 379 0 2 1742 358 315 126 22 chr3 151690408 151690575 -7909208 - MLT1B LTR MaLR -116 274 86 2 1742 333 222 14 0 chr3 151690575 151690647 -7909136 + ID4_ SINE ID 1 73 -10 2 1742 860 101 0 7 chr3 151690648 151690787 -7908996 + (TAGA)n Simple_repeat Simple_repeat 1 138 0 2 1742 358 315 126 22 chr3 151690787 151690799 -7908984 - MLT1B LTR MaLR -305 85 74 2 1742 498 221 32 91 chr3 151691022 151691176 -7908607 + B3A SINE B2 42 186 -12 2 1742 701 110 0 0 chr3 151691227 151691327 -7908456 + RMER19C LTR ERVK 512 611 0 2 1742 378 266 43 61 chr3 151691377 151691541 -7908242 - L1M1 LINE L1 -811 5492 5332 2 1742 351 231 0 13 chr3 151691743 151691822 -7907961 + ID_B1 SINE B4 99 176 -48 2 1742 185 215 32 11 chr3 151691829 151691923 -7907860 + GA-rich Low_complexity Low_complexity 1 96 0 2 1742 569 283 148 25 chr3 151692288 151692647 -7907136 - MTD LTR MaLR -16 403 1 2 1742 850 281 160 6 chr3 151693993 151694305 -7905478 + Lx8 LINE L1 6878 7237 -236 2 1742 189 0 0 0 chr3 151694383 151694404 -7905379 + (A)n Simple_repeat Simple_repeat 1 21 0 2 1742 419 275 18 0 chr3 151694801 151694910 -7904873 - B1_Mur4 SINE Alu -7 143 33 2 1742 824 107 11 34 chr3 151695186 151695361 -7904422 + CT-rich Low_complexity Low_complexity 3 173 0 2 1742 471 266 101 21 chr3 151695864 151696052 -7903731 - MLT1D LTR MaLR -5 500 298 2 1742 283 271 128 34 chr3 151696102 151696251 -7903532 - MLT1D LTR MaLR -292 213 51 2 1742 423 132 0 0 chr3 151696252 151696320 -7903463 + (T)n Simple_repeat Simple_repeat 1 68 0 2 1742 2797 68 98 2 chr3 151696336 151696353 -7903430 - Lx3_Mus LINE L1 -1 7008 6992 2 1742 188 34 0 33 chr3 151696353 151696383 -7903400 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 2 1742 2797 68 98 2 chr3 151696383 151696765 -7903018 - Lx3_Mus LINE L1 -18 6991 6572 2 1742 636 209 131 12 chr3 151696873 151697033 -7902750 + B3 SINE B2 38 216 0 2 1742 604 246 53 95 chr3 151697260 151697449 -7902334 + B3A SINE B2 1 181 -14 2 1742 2196 38 0 0 chr3 151697488 151697751 -7902032 - L1Md_F2 LINE L1 -1 6581 6319 2 1742 2687 51 0 0 chr3 151698063 151698436 -7901347 - ORR1A1-int LTR MaLR -1174 618 246 2 1742 4248 64 4 2 chr3 151698834 151699366 -7900417 - L1_Mus1 LINE L1 -1 6566 6034 2 1742 2197 108 8 84 chr3 151699370 151699911 -7899872 + L1Md_A LINE L1 908 1390 -4493 2 1742 4873 112 46 3 chr3 151700017 151700753 -7899030 - L1_Mm LINE L1 -913 4970 4203 2 1742 7184 48 15 0 chr3 151700752 151701610 -7898173 + L1_Mus1 LINE L1 5696 6566 -1 2 1742 24 91 0 0 chr3 151701610 151701676 -7898107 + AT_rich Low_complexity Low_complexity 1 66 0 2 1742 292 258 6 6 chr3 151701913 151702092 -7897691 + (TG)n Simple_repeat Simple_repeat 2 180 0 2 1742 288 250 0 0 chr3 151702136 151702216 -7897567 + (TG)n Simple_repeat Simple_repeat 2 81 0 2 1742 293 188 29 0 chr3 151702756 151702825 -7896958 + (CATA)n Simple_repeat Simple_repeat 4 74 0 2 1742 225 303 67 0 chr3 151702864 151702953 -7896830 - L2 LINE L2 -667 2752 2658 2 1742 1295 258 31 37 chr3 151702988 151703342 -7896441 - MTE2b LTR MaLR 0 379 28 2 1742 567 0 0 0 chr3 151704652 151704715 -7895068 + (TAGA)n Simple_repeat Simple_repeat 4 66 0 2 1742 1754 45 4 31 chr3 151704715 151704942 -7894841 - L1Md_F2 LINE L1 -20 6562 6342 2 1742 8648 43 5 0 chr3 151704948 151705989 -7893794 + L1_Mm LINE L1 4342 5387 -496 2 1742 1761 133 88 67 chr3 151706260 151706647 -7893136 + RMER10B LTR ERVL 4 398 0 2 1742 461 254 7 74 chr3 151706966 151707115 -7892668 + MLT1A LTR MaLR 16 154 -220 2 1742 396 206 56 90 chr3 151707116 151707260 -7892523 - Lx6 LINE L1 -11 7449 7311 2 1742 965 217 171 27 chr3 151707245 151707612 -7892171 - Lx7 LINE L1 -215 7481 7062 2 1742 559 280 55 58 chr3 151709301 151709593 -7890190 + B4A SINE B4 2 292 0 2 1742 201 311 16 0 chr3 151709595 151709656 -7890127 + (CA)n Simple_repeat Simple_repeat 1 62 0 2 1742 196 362 101 32 chr3 151711196 151711413 -7888370 - L4 LINE RTE -987 1042 811 2 1742 310 353 78 0 chr3 151711418 151711571 -7888212 - MLT1E3 LTR MaLR -6 618 454 2 1742 8271 48 0 1 chr3 151711573 151713258 -7886525 - L1Md_F2 LINE L1 0 6582 4899 2 1742 297 0 0 0 chr3 151713538 151713571 -7886212 + (GA)n Simple_repeat Simple_repeat 2 34 0 2 1742 429 250 30 0 chr3 151714793 151714893 -7884890 - L1M3 LINE L1 -405 5784 5682 2 1742 548 234 28 7 chr3 151714922 151715064 -7884719 - RLTR40 LTR ERVK -10 807 663 2 1742 1208 158 77 48 chr3 151715106 151715419 -7884364 - RLTR40 LTR ERVK -456 361 40 2 1742 3486 25 5 0 chr3 151715425 151715819 -7883964 + MTA_Mm LTR MaLR 1 396 0 2 1742 7489 47 18 1 chr3 151715819 151716823 -7882960 + MTA_Mm-int LTR MaLR 1 1021 -77 2 1742 1348 214 40 54 chr3 151716837 151717188 -7882595 + ORR1E LTR MaLR 4 349 -10 2 1742 1610 75 0 0 chr3 151718404 151718616 -7881167 + L1_Mus2 LINE L1 6355 6566 0 2 1742 435 19 0 0 chr3 151718987 151719039 -7880744 + (TG)n Simple_repeat Simple_repeat 2 53 0 2 1742 924 225 65 59 chr3 151719068 151719422 -7880361 - Lx9 LINE L1 -22 7622 7267 2 1742 2314 185 35 42 chr3 151719440 151719983 -7879800 - RLTR17 LTR ERVK -67 625 87 2 1742 514 59 0 0 chr3 151719956 151720024 -7879759 + ORR1A4 LTR MaLR 262 329 0 2 1742 203 236 133 11 chr3 151720211 151720301 -7879482 + MIRc SINE MIR 129 229 -39 2 1742 3156 49 31 0 chr3 151720409 151720796 -7878987 + MTB LTR MaLR 1 399 -1 2 1742 371 309 56 73 chr3 151721889 151722067 -7877716 + B4A SINE B4 2 176 -116 2 1742 185 343 15 0 chr3 151723364 151723431 -7876352 - L2b LINE L2 -1 3374 3307 2 1742 464 265 154 0 chr3 151723432 151723568 -7876215 + RSINE1 SINE B4 3 159 -6 3 1742 1472 83 16 0 chr3 151724476 151724668 -7875115 - B2_Mm2 SINE B2 0 195 1 3 1742 834 289 9 0 chr3 151725517 151725745 -7874038 - Lx7 LINE L1 -592 7104 6875 3 1742 283 323 99 25 chr3 151726703 151726865 -7872918 - MIRb SINE MIR -65 203 30 3 1742 638 219 152 6 chr3 151727970 151728135 -7871648 + B3 SINE B2 1 189 -27 3 1742 1258 281 29 20 chr3 151728427 151728776 -7871007 - Lx6 LINE L1 0 7460 7109 3 1742 490 265 51 56 chr3 151729006 151729202 -7870581 - RLTR26 LTR ERVK -225 417 223 3 1742 319 273 61 43 chr3 151729236 151729351 -7870432 - RMER13A LTR ERVK -730 130 14 3 1742 227 269 119 0 chr3 151729360 151729427 -7870356 - Lx6 LINE L1 -342 7118 7044 3 1742 296 102 20 0 chr3 151730895 151730944 -7868839 + (GAAA)n Simple_repeat Simple_repeat 2 51 0 3 1742 22 70 0 0 chr3 151731026 151731069 -7868714 + AT_rich Low_complexity Low_complexity 1 43 0 3 1742 349 206 9 85 chr3 151731282 151731388 -7868395 + MLT2B2 LTR ERVL 463 560 -2 3 1742 222 37 0 0 chr3 151731710 151731737 -7868046 + (TTTTC)n Simple_repeat Simple_repeat 2 28 0 3 1742 728 144 40 0 chr3 151731737 151731862 -7867921 - B1_Mur4 SINE Alu -12 138 9 3 1742 23 33 0 0 chr3 151731866 151731896 -7867887 + AT_rich Low_complexity Low_complexity 1 30 0 3 1742 27 0 0 0 chr3 151731997 151732024 -7867759 + AT_rich Low_complexity Low_complexity 1 27 0 3 1742 2253 87 0 0 chr3 151732501 151732822 -7866961 - ORR1A2 LTR MaLR -6 321 1 3 1742 417 318 177 63 chr3 151732876 151733333 -7866450 + LTR33C LTR ERVL 49 557 -72 3 1742 206 320 94 47 chr3 151734814 151734942 -7864841 + L2a LINE L2 3289 3422 -4 3 1742 278 163 253 11 chr3 151736894 151736981 -7862802 + PB1D10 SINE Alu 9 116 -1 3 1742 602 152 0 8 chr3 151736981 151737069 -7862714 + polypurine Low_complexity Low_complexity 1 88 0 3 1742 1467 28 0 0 chr3 151737069 151737249 -7862534 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 3 1742 602 152 0 8 chr3 151737249 151737286 -7862497 + polypurine Low_complexity Low_complexity 89 125 0 3 1742 545 252 42 0 chr3 151737292 151737435 -7862348 + B3A SINE B2 2 150 -48 3 1742 414 39 0 0 chr3 151737439 151737491 -7862292 + (CA)n Simple_repeat Simple_repeat 1 52 0 3 1742 1382 189 113 41 chr3 151739095 151739474 -7860309 - MTD LTR MaLR -11 408 2 3 1742 229 327 77 0 chr3 151739806 151739910 -7859873 + PB1D10 SINE Alu 1 112 -5 3 1742 24 32 0 0 chr3 151739912 151739943 -7859840 + AT_rich Low_complexity Low_complexity 1 31 0 3 1742 2943 219 105 77 chr3 151740338 151741237 -7858546 + RMER1C Other Other 414 1337 -5 3 1742 1777 230 172 46 chr3 151741776 151743235 -7856548 + RLTR22_Mus LTR ERVK 1 1806 -42 3 1742 313 200 17 0 chr3 151743237 151743297 -7856486 - Lx8 LINE L1 -840 6633 6573 3 1742 911 217 274 0 chr3 151743288 151743597 -7856186 + Lx8 LINE L1 6712 7105 -368 3 1742 405 0 0 0 chr3 151743597 151743642 -7856141 + (CA)n Simple_repeat Simple_repeat 2 46 0 3 1742 26 30 0 0 chr3 151743658 151743691 -7856092 + AT_rich Low_complexity Low_complexity 1 33 0 3 1742 643 306 19 32 chr3 151744031 151744247 -7855536 + B4A SINE B4 12 224 -68 3 1742 284 232 14 14 chr3 151744282 151744352 -7855431 + (CA)n Simple_repeat Simple_repeat 1 70 0 3 1742 645 243 52 0 chr3 151744948 151745084 -7854699 + B1_Mur2 SINE Alu 2 144 -5 3 1742 744 188 22 0 chr3 151745117 151745255 -7854528 + B1_Mur4 SINE Alu 2 142 -8 3 1742 22 35 0 0 chr3 151745294 151745323 -7854460 + AT_rich Low_complexity Low_complexity 1 29 0 3 1742 274 273 0 0 chr3 151745998 151746064 -7853719 + B4A SINE B4 138 203 -89 3 1742 936 178 0 0 chr3 151746228 151746408 -7853375 + (TG)n Simple_repeat Simple_repeat 1 180 0 3 1742 622 267 69 39 chr3 151746824 151747159 -7852624 + RLTR15 LTR ERVK 1 345 -14 3 1742 2532 146 35 0 chr3 151747319 151747723 -7852060 - MTC LTR MaLR 0 421 4 3 1742 5806 154 55 20 chr3 151747740 151748927 -7850856 - MTC-int LTR MaLR -28 1230 3 3 1742 2296 177 37 0 chr3 151748927 151749333 -7850450 - MTC LTR MaLR 0 421 1 3 1742 1406 84 11 0 chr3 151749422 151749612 -7850171 + B2_Mm1t SINE B2 2 193 0 3 1742 1500 139 121 3 chr3 151749774 151750056 -7849727 + ORR1A2 LTR MaLR 1 315 -12 3 1742 1974 195 46 8 chr3 151750124 151750683 -7849100 + Lx4B LINE L1 6384 6965 -11 3 1742 269 278 33 92 chr3 151751222 151751516 -7848267 + RSINE1 SINE B4 3 282 -10 3 1742 186 43 0 0 chr3 151752491 151752514 -7847269 + (TTA)n Simple_repeat Simple_repeat 1 23 0 3 1742 833 185 133 0 chr3 151752586 151752759 -7847024 - B3 SINE B2 -19 197 2 3 1742 369 0 0 0 chr3 151753243 151753284 -7846499 + (A)n Simple_repeat Simple_repeat 1 41 0 3 1742 295 287 82 63 chr3 151753580 151753754 -7846029 + MIRb SINE MIR 2 190 -78 3 1742 2306 117 74 0 chr3 151753793 151754160 -7845623 - ORR1B1 LTR MaLR 0 394 1 3 1742 429 232 0 12 chr3 151754184 151754267 -7845516 + RMER30 DNA MER1_type 119 200 -2 3 1742 1236 194 67 12 chr3 151754362 151754617 -7845166 + B4A SINE B4 6 274 -18 3 1742 327 25 0 0 chr3 151754654 151754694 -7845089 + (CA)n Simple_repeat Simple_repeat 2 41 0 3 1742 274 268 0 0 chr3 151755101 151755183 -7844600 + (CA)n Simple_repeat Simple_repeat 2 83 0 3 1742 208 302 0 0 chr3 151756206 151756269 -7843514 + (CA)n Simple_repeat Simple_repeat 2 64 0 3 1742 557 271 64 54 chr3 151756543 151756746 -7843037 + B3 SINE B2 10 214 -2 3 1742 342 0 0 0 chr3 151757497 151757535 -7842248 + (TG)n Simple_repeat Simple_repeat 1 38 0 3 1742 557 316 55 51 chr3 151757535 151757752 -7842031 - B4 SINE B4 -26 266 49 3 1742 251 182 0 29 chr3 151758337 151758405 -7841378 + (TATATG)n Simple_repeat Simple_repeat 1 66 0 3 1742 984 128 100 71 chr3 151758451 151758661 -7841122 - B3 SINE B2 0 216 1 3 1742 605 136 0 19 chr3 151759159 151759264 -7840519 + B1_Mus2 SINE Alu 44 146 -1 3 1742 513 47 0 0 chr3 151759302 151759366 -7840417 + (GA)n Simple_repeat Simple_repeat 2 65 0 3 1742 1021 89 0 37 chr3 151759773 151759960 -7839823 + (TG)n Simple_repeat Simple_repeat 1 180 0 3 1742 1007 191 46 0 chr3 151760137 151760331 -7839452 + B3 SINE B2 2 204 -12 3 1742 430 276 149 0 chr3 151760354 151760488 -7839295 + B3 SINE B2 1 154 -62 3 1742 571 262 28 0 chr3 151760536 151760681 -7839102 - B3A SINE B2 -49 149 1 3 1742 271 250 9 48 chr3 151761238 151761301 -7838482 - L1M2 LINE L1 -4847 2002 1943 3 1742 186 43 0 0 chr3 151761301 151761324 -7838459 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 3 1742 271 250 9 48 chr3 151761324 151761365 -7838418 - L1M2 LINE L1 -4907 1942 1902 3 1742 698 90 0 0 chr3 151761380 151761480 -7838303 - PB1D9 SINE Alu -8 112 13 3 1742 2105 139 38 0 chr3 151761543 151761887 -7837896 + MTC LTR MaLR 1 357 -64 3 1742 236 111 0 22 chr3 151762849 151762895 -7836888 + (CACCC)n Simple_repeat Simple_repeat 3 47 0 3 1742 2908 142 49 16 chr3 151763487 151763940 -7835843 + RLTR20D LTR ERVK 1 461 -107 3 1742 414 0 0 0 chr3 151763940 151763986 -7835797 + (TG)n Simple_repeat Simple_repeat 2 47 0 3 1742 2908 142 49 16 chr3 151763986 151764082 -7835701 + RLTR20D LTR ERVK 462 567 -1 3 1742 895 200 10 45 chr3 151764560 151764759 -7835024 - B3A SINE B2 -6 192 1 3 1742 242 270 9 99 chr3 151764760 151764871 -7834912 + MLT1K LTR MaLR 463 563 -32 3 1742 193 28 81 27 chr3 151764871 151764908 -7834875 + (TTTTG)n Simple_repeat Simple_repeat 1 39 0 3 1742 766 204 0 33 chr3 151765255 151765407 -7834376 - B1_Mur2 SINE Alu 0 149 3 3 1742 565 160 0 25 chr3 151766238 151766398 -7833385 + (TG)n Simple_repeat Simple_repeat 2 157 0 3 1742 624 247 75 43 chr3 151766401 151766587 -7833196 - B4A SINE B4 0 292 101 3 1742 200 333 17 22 chr3 151766618 151766799 -7832984 + (TATG)n Simple_repeat Simple_repeat 1 180 0 3 1742 475 312 0 48 chr3 151766757 151767165 -7832618 + (TG)n Simple_repeat Simple_repeat 1 388 0 3 1742 315 299 12 19 chr3 151767194 151767354 -7832429 + (TATG)n Simple_repeat Simple_repeat 2 160 0 3 1742 336 324 11 17 chr3 151767325 151767504 -7832279 + (TG)n Simple_repeat Simple_repeat 1 178 0 3 1742 228 237 119 0 chr3 151767536 151767595 -7832188 - ID4_ SINE ID -14 69 4 3 1742 1658 169 48 56 chr3 151767710 151768087 -7831696 + ORR1D1 LTR MaLR 1 374 0 3 1742 620 310 104 8 chr3 151769520 151769780 -7830003 + MTE2a LTR MaLR 1 285 -94 3 1742 225 283 0 0 chr3 151770376 151770436 -7829347 + G-rich Low_complexity Low_complexity 1 60 0 3 1742 251 333 0 57 chr3 151771350 151771525 -7828258 + GA-rich Low_complexity Low_complexity 2 166 0 3 1742 236 330 19 28 chr3 151771566 151771672 -7828111 - MIRb SINE MIR -40 228 124 3 1742 314 204 32 0 chr3 151771691 151771759 -7828024 + B1F SINE Alu 1 70 -77 3 1742 232 330 37 38 chr3 151772108 151772305 -7827478 - MER102a DNA MER1_type -137 193 1 3 1742 226 172 0 159 chr3 151772593 151772662 -7827121 - Helitron2Na_Mam RC Helitron? -208 116 59 3 1742 843 254 103 8 chr3 151773525 151773787 -7825996 + MTE2a LTR MaLR 93 379 0 3 1742 746 100 0 0 chr3 151773838 151773948 -7825835 + B2_Mm2 SINE B2 2 111 -84 3 1742 346 302 115 23 chr3 151774650 151774867 -7824916 + Tigger13a DNA MER2_type 133 369 -402 3 1742 301 142 77 0 chr3 151775007 151775082 -7824701 + PB1D10 SINE Alu 1 92 -57 3 1742 315 0 0 0 chr3 151775378 151775413 -7824370 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 3 1742 1259 35 0 0 chr3 151775413 151775558 -7824225 - B1_Mm SINE Alu -2 145 1 3 1742 566 216 8 25 chr3 151776362 151776481 -7823302 - B1F SINE Alu -32 117 1 3 1742 333 145 0 0 chr3 151776884 151776946 -7822837 + (GGGA)n Simple_repeat Simple_repeat 1 62 0 3 1742 258 32 0 0 chr3 151777672 151777703 -7822080 + (TG)n Simple_repeat Simple_repeat 1 31 0 4 1742 306 0 0 0 chr3 151777703 151777736 -7822047 + (GA)n Simple_repeat Simple_repeat 1 34 0 4 1742 324 0 0 0 chr3 151778192 151778228 -7821555 + (TTTA)n Simple_repeat Simple_repeat 1 36 0 4 1742 262 160 60 0 chr3 151778228 151778268 -7821515 - PB1D7 SINE Alu -11 109 67 4 1742 902 254 5 34 chr3 151778268 151778432 -7821351 - ID_B1 SINE B4 -12 212 15 4 1742 255 31 0 0 chr3 151778432 151778464 -7821319 + (TC)n Simple_repeat Simple_repeat 1 32 0 4 1742 414 271 0 10 chr3 151778476 151778573 -7821210 - B1_Mus2 SINE Alu -50 97 2 4 1742 194 30 0 83 chr3 151778919 151778955 -7820828 + (TTTA)n Simple_repeat Simple_repeat 1 33 0 4 1742 1256 50 13 0 chr3 151778955 151779114 -7820669 - B2_Mm2 SINE B2 -34 161 1 4 1742 2042 161 76 56 chr3 151779268 151780004 -7819779 + RMER6A LTR ERVK 57 753 -3 4 1742 668 195 213 0 chr3 151780544 151780713 -7819070 + B3 SINE B2 1 205 -11 4 1742 1317 85 32 0 chr3 151780747 151780935 -7818848 + B2_Mm2 SINE B2 1 194 -1 4 217 259 228 29 29 chr3 151781341 151781481 -7818302 + (TTATA)n Simple_repeat Simple_repeat 2 141 0 4 1743 1327 82 11 0 chr3 151781860 151782044 -7817739 + Lx2 LINE L1 5689 5874 -1123 4 1743 5175 141 48 1 chr3 151782045 151782939 -7816844 + Lx2 LINE L1 6054 6989 -8 4 1743 892 279 79 8 chr3 151783263 151783530 -7816253 + B4A SINE B4 7 292 0 4 1743 537 30 0 0 chr3 151783557 151783624 -7816159 + (CAGAGA)n Simple_repeat Simple_repeat 6 72 0 4 1743 232 204 56 0 chr3 151783817 151783871 -7815912 - MER46C DNA MER2_type -13 325 269 4 1743 321 371 87 24 chr3 151784121 151784328 -7815455 - MIR SINE MIR -1 261 42 4 1743 562 218 0 26 chr3 151784482 151784595 -7815188 + B1F2 SINE Alu 23 132 -17 4 1743 644 235 51 19 chr3 151785579 151785734 -7814049 + ID_B1 SINE B4 1 160 -64 4 1743 275 189 0 0 chr3 151785734 151785787 -7813996 + ORR1C1 LTR MaLR 3 55 -329 4 1743 1631 173 63 52 chr3 151785787 151786134 -7813649 + ORR1C1 LTR MaLR 28 378 0 4 1743 187 252 135 43 chr3 151786455 151786596 -7813187 + L2 LINE L2 2360 2513 -906 4 1743 243 333 14 0 chr3 151787380 151787452 -7812331 + ID4_ SINE ID 2 74 -9 4 1743 1863 156 132 0 chr3 151787855 151788189 -7811594 + ORR1C1 LTR MaLR 1 378 0 4 1743 730 136 15 0 chr3 151788190 151788322 -7811461 + GA-rich Low_complexity Low_complexity 1 134 0 4 1743 1101 90 0 0 chr3 151788327 151788482 -7811301 + (GGAAA)n Simple_repeat Simple_repeat 5 159 0 4 1743 276 290 250 31 chr3 151789120 151789216 -7810567 + ID_B1 SINE B4 72 188 -36 4 1743 1809 148 80 71 chr3 151789301 151789665 -7810118 + ORR1B2 LTR MaLR 1 367 0 4 1743 384 40 0 0 chr3 151790881 151790931 -7808852 + (TC)n Simple_repeat Simple_repeat 1 50 0 4 1743 464 0 18 0 chr3 151790931 151790986 -7808797 + (CA)n Simple_repeat Simple_repeat 1 57 0 4 1743 217 200 217 0 chr3 151791504 151791564 -7808219 - B3 SINE B2 -85 131 59 4 1743 262 266 0 0 chr3 151791924 151792003 -7807780 + (TG)n Simple_repeat Simple_repeat 2 80 0 4 1743 536 163 0 38 chr3 151792008 151792193 -7807590 + (TCTG)n Simple_repeat Simple_repeat 1 178 0 4 1743 681 144 0 32 chr3 151792213 151792399 -7807384 + (TCTG)n Simple_repeat Simple_repeat 1 180 0 4 1743 601 128 14 14 chr3 151792417 151792560 -7807223 + (TCTG)n Simple_repeat Simple_repeat 4 146 0 4 1743 678 242 0 69 chr3 151792566 151792739 -7807044 - RSINE1 SINE B4 -1 164 4 4 1743 370 263 61 0 chr3 151792751 151792850 -7806933 - PB1D10 SINE Alu 0 117 13 4 1743 21 0 0 0 chr3 151793236 151793257 -7806526 + AT_rich Low_complexity Low_complexity 1 21 0 4 1743 623 240 16 0 chr3 151793663 151793788 -7805995 + B1_Mur3 SINE Alu 2 128 -21 4 1743 315 0 0 0 chr3 151793788 151793823 -7805960 + (TC)n Simple_repeat Simple_repeat 1 35 0 4 1743 372 22 0 0 chr3 151793823 151793867 -7805916 + (CA)n Simple_repeat Simple_repeat 1 45 0 4 1743 1280 217 44 4 chr3 151793884 151794157 -7805626 - MTD LTR MaLR -44 375 92 4 1743 1108 189 16 0 chr3 151794157 151794348 -7805435 + URR1B DNA MER1_type 1 194 -31 4 1743 421 198 37 0 chr3 151794351 151794432 -7805351 - MTD LTR MaLR -317 102 19 4 1743 393 75 0 0 chr3 151794432 151794485 -7805298 + (GGAA)n Simple_repeat Simple_repeat 2 54 0 4 1743 1121 95 0 12 chr3 151794485 151794655 -7805128 + (GGAAA)n Simple_repeat Simple_repeat 4 171 0 4 1743 479 251 179 22 chr3 151794719 151794898 -7804885 + B4 SINE B4 81 287 -5 4 1743 1730 82 16 32 chr3 151795223 151795476 -7804307 + L1Md_F2 LINE L1 6322 6570 -12 4 1743 805 197 109 0 chr3 151795501 151795684 -7804099 + B3 SINE B2 1 203 -13 4 1743 363 60 0 0 chr3 151795687 151795737 -7804046 + (TTG)n Simple_repeat Simple_repeat 2 51 0 4 1743 623 53 0 0 chr3 151795737 151795813 -7803970 - B1_Mus2 SINE Alu -8 139 64 4 1743 647 283 71 0 chr3 151796007 151796205 -7803578 - ID_B1 SINE B4 -11 213 2 4 1743 545 277 115 40 chr3 151796228 151796480 -7803303 + L1MC4 LINE L1 7759 8029 -13 4 1743 312 341 66 0 chr3 151796980 151797088 -7802695 + MIR SINE MIR 7 127 -141 4 1743 5868 57 3 19 chr3 151797200 151797981 -7801802 + RLTR13D1 LTR ERVK 1 768 -38 4 1743 875 298 101 0 chr3 151798206 151798444 -7801339 + B4A SINE B4 8 269 -23 4 1743 384 22 0 0 chr3 151798446 151798491 -7801292 + (CA)n Simple_repeat Simple_repeat 2 46 0 4 1743 22 0 0 0 chr3 151798523 151798545 -7801238 + AT_rich Low_complexity Low_complexity 1 22 0 4 1743 3528 86 40 59 chr3 151798640 151799185 -7800598 + MT2B LTR ERVL 1 535 -66 4 1743 1861 127 80 0 chr3 151799162 151799461 -7800322 + IAPEY2_LTR LTR ERVK 35 357 0 4 1743 610 130 0 0 chr3 151799461 151799553 -7800230 + MT2B LTR ERVL 493 584 0 4 1743 297 288 14 0 chr3 151799563 151799636 -7800147 + PB1 SINE Alu 47 120 -7 4 1743 677 285 135 0 chr3 151799649 151799856 -7799927 + MER2 DNA MER2_type 86 320 -25 4 1743 180 111 0 0 chr3 151799863 151799890 -7799893 + (CA)n Simple_repeat Simple_repeat 2 28 0 4 1743 270 0 0 0 chr3 151799921 151799951 -7799832 + (CA)n Simple_repeat Simple_repeat 1 30 0 4 1743 207 0 0 0 chr3 151800108 151800131 -7799652 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 4 1743 1095 92 0 0 chr3 151800139 151800280 -7799503 + B1_Mus1 SINE Alu 1 141 -7 4 1743 467 134 0 12 chr3 151800291 151800374 -7799409 + (GAAAA)n Simple_repeat Simple_repeat 2 83 0 4 1743 548 355 19 5 chr3 151800916 151801131 -7798652 - MIRb SINE MIR -14 254 37 4 1743 236 53 26 0 chr3 151801205 151801243 -7798540 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 4 1743 818 145 15 0 chr3 151801245 151801376 -7798407 - B1_Mur4 SINE Alu -13 137 5 4 1743 246 310 0 0 chr3 151801447 151801505 -7798278 + ID4 SINE ID 5 62 -21 4 1743 1145 75 0 7 chr3 151801514 151801662 -7798121 - B1_Mus2 SINE Alu 0 147 1 4 1743 266 149 28 8 chr3 151802025 151802113 -7797670 + MT2A LTR ERVL 461 551 -4 4 1743 1413 39 45 6 chr3 151802161 151802340 -7797443 - B2_Mm2 SINE B2 -8 187 2 4 1743 854 217 30 108 chr3 151802988 151803293 -7796490 - Lx6 LINE L1 -7 7453 7173 4 1743 1512 58 37 0 chr3 151803306 151803494 -7796289 - B2_Mm2 SINE B2 0 195 1 4 1743 180 321 19 0 chr3 151803512 151803565 -7796218 - L4 LINE RTE -1286 743 690 4 1743 350 276 141 44 chr3 151803834 151804012 -7795771 - B3A SINE B2 0 198 15 4 1743 354 129 0 79 chr3 151804145 151804221 -7795562 - ORR1C2 LTR MaLR -1 393 324 4 1743 440 355 104 42 chr3 151804808 151805067 -7794716 + B4A SINE B4 2 276 -16 4 1743 369 0 0 0 chr3 151805457 151805498 -7794285 + (TTTG)n Simple_repeat Simple_repeat 2 42 0 4 1743 549 268 42 7 chr3 151806923 151807066 -7792717 + B3A SINE B2 1 148 -50 4 1743 405 0 0 0 chr3 151807080 151807125 -7792658 + (CA)n Simple_repeat Simple_repeat 1 45 0 4 1743 423 286 23 94 chr3 151808775 151808994 -7790789 + B4 SINE B4 5 206 -86 4 1743 510 214 7 14 chr3 151809011 151809038 -7790745 + polypurine Low_complexity Low_complexity 4 30 0 4 1743 1142 112 6 0 chr3 151809038 151809216 -7790567 + (GGAGA)n Simple_repeat Simple_repeat 2 180 0 4 1743 510 214 7 14 chr3 151809216 151809335 -7790448 + GA-rich Low_complexity Low_complexity 31 149 0 4 1743 186 71 0 0 chr3 151809401 151809429 -7790354 + (CA)n Simple_repeat Simple_repeat 2 29 0 4 1743 3170 56 13 2 chr3 151809577 151809973 -7789810 - MTB LTR MaLR 0 400 1 4 1743 216 232 17 35 chr3 151810170 151810228 -7789555 - MIRb SINE MIR -207 61 5 4 1743 628 338 153 18 chr3 151810510 151810890 -7788893 + MER20B DNA MER1_type 17 447 -336 4 1743 892 201 83 25 chr3 151810996 151811200 -7788583 + B3 SINE B2 1 216 0 4 1743 334 318 36 48 chr3 151811220 151811385 -7788398 + RSINE1 SINE B4 3 165 0 4 1743 240 309 182 0 chr3 151811468 151811594 -7788189 + B1F SINE Alu 1 149 0 4 1743 615 239 14 21 chr3 151811900 151812045 -7787738 + B1_Mur2 SINE Alu 1 144 -5 4 1743 227 270 76 33 chr3 151812049 151812141 -7787642 + B1F SINE Alu 17 112 -37 4 1743 276 30 0 0 chr3 151813486 151813519 -7786264 + (GTTTG)n Simple_repeat Simple_repeat 2 34 0 4 1743 1263 34 0 7 chr3 151813519 151813657 -7786126 - B1_Mus2 SINE Alu -9 138 1 4 1743 319 259 78 11 chr3 151813731 151813821 -7785962 + RSINE1 SINE B4 12 107 -58 4 1743 882 270 31 0 chr3 151813995 151814191 -7785592 + B3 SINE B2 3 204 -12 4 1743 396 55 0 0 chr3 151814787 151814842 -7784941 + (CGGGG)n Simple_repeat Simple_repeat 1 55 0 4 1743 571 270 132 56 chr3 151815225 151815476 -7784307 - B4 SINE B4 -20 272 3 4 1743 276 111 0 0 chr3 151815677 151815722 -7784061 + (TG)n Simple_repeat Simple_repeat 2 46 0 4 1743 361 275 160 0 chr3 151815722 151815842 -7783941 - RSINE1 SINE B4 -22 143 3 4 1743 21 36 0 0 chr3 151817109 151817137 -7782646 + AT_rich Low_complexity Low_complexity 1 28 0 5 1743 412 294 102 15 chr3 151817176 151817388 -7782395 + ID_B1 SINE B4 1 232 -60 5 1743 334 302 0 0 chr3 151817734 151817820 -7781963 + B4 SINE B4 2 87 -205 5 1743 461 211 55 2 chr3 151817827 151817926 -7781857 + B3A SINE B2 7 107 -88 5 1743 387 0 0 0 chr3 151818017 151818060 -7781723 + (GA)n Simple_repeat Simple_repeat 1 43 0 5 1743 789 67 0 0 chr3 151818060 151818164 -7781619 + (GGAA)n Simple_repeat Simple_repeat 4 107 0 5 1743 32 43 0 0 chr3 151818834 151818880 -7780903 + AT_rich Low_complexity Low_complexity 1 46 0 5 1743 625 332 100 30 chr3 151818930 151819160 -7780623 + B4A SINE B4 37 282 -10 5 1743 243 0 0 0 chr3 151819194 151819221 -7780562 + (CA)n Simple_repeat Simple_repeat 2 28 0 5 1743 226 318 60 15 chr3 151819693 151819760 -7780023 + MLT1J-int LTR MaLR 786 855 -532 5 1743 235 115 77 0 chr3 151820021 151820073 -7779710 - L2 LINE L2 -552 2867 2812 5 1743 250 351 50 79 chr3 151820152 151820393 -7779390 + B4 SINE B4 1 234 -58 5 1743 763 108 146 8 chr3 151820504 151820634 -7779149 - B1_Mus1 SINE Alu 0 148 1 5 1743 727 344 47 25 chr3 151821389 151821666 -7778117 + B4A SINE B4 9 291 -1 5 1743 303 213 42 11 chr3 151821680 151821775 -7778008 + (CA)n Simple_repeat Simple_repeat 1 98 0 5 1743 606 128 26 0 chr3 151821852 151821969 -7777814 + CT-rich Low_complexity Low_complexity 1 120 0 5 1743 340 161 22 33 chr3 151822312 151822402 -7777381 + (TATATG)n Simple_repeat Simple_repeat 2 90 0 5 1743 576 312 61 3 chr3 151822411 151822705 -7777078 - L1M2 LINE L1 -510 5793 5491 5 1743 439 216 138 39 chr3 151822768 151822898 -7776885 - RSINE1 SINE B4 -22 143 1 5 1743 256 173 60 36 chr3 151822899 151822983 -7776800 - L1M4 LINE L1 -696 5488 5403 5 1743 857 139 0 0 chr3 151823066 151823195 -7776588 + B1_Mus2 SINE Alu 13 141 -6 5 1743 887 250 20 0 chr3 151823217 151823417 -7776366 + B3 SINE B2 3 206 -10 5 1743 815 194 0 28 chr3 151823453 151823596 -7776187 + B1_Mur1 SINE Alu 5 143 -6 5 1743 247 330 78 0 chr3 151823634 151823737 -7776046 + MIRc SINE MIR 36 146 -122 5 1743 333 0 0 0 chr3 151824083 151824120 -7775663 + (TCTTG)n Simple_repeat Simple_repeat 2 38 0 5 1743 656 130 9 0 chr3 151824134 151824249 -7775534 + (TTTC)n Simple_repeat Simple_repeat 1 116 0 5 1743 397 301 20 46 chr3 151824256 151824409 -7775374 - B1F1 SINE Alu 0 149 1 5 1743 201 138 0 0 chr3 151824814 151824843 -7774940 + (TC)n Simple_repeat Simple_repeat 1 29 0 5 1743 366 231 121 0 chr3 151824971 151825062 -7774721 - RSINE1 SINE B4 -56 109 8 5 1743 184 273 36 0 chr3 151825310 151825365 -7774418 + MIRb SINE MIR 40 96 -172 5 1743 4368 123 35 30 chr3 151825368 151825524 -7774259 - RMER6A LTR ERVK -7 749 589 5 1743 321 26 0 0 chr3 151825524 151825562 -7774221 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 5 1743 4368 123 35 30 chr3 151825562 151826150 -7773633 - RMER6A LTR ERVK -168 588 2 5 1743 189 318 123 35 chr3 151826172 151826286 -7773497 + MIRb SINE MIR 118 241 -27 5 1743 237 286 69 39 chr3 151826580 151826682 -7773101 - MIRb SINE MIR -101 167 63 5 1743 190 279 114 0 chr3 151826705 151826784 -7772999 + MIRc SINE MIR 160 247 -21 5 1743 608 200 33 0 chr3 151826907 151827027 -7772756 + B3 SINE B2 1 124 -92 5 1743 24 0 0 0 chr3 151827084 151827108 -7772675 + AT_rich Low_complexity Low_complexity 1 24 0 5 1743 22 0 0 0 chr3 151827172 151827194 -7772589 + AT_rich Low_complexity Low_complexity 1 22 0 5 1743 1271 7 7 20 chr3 151827261 151827411 -7772372 + B1_Mus1 SINE Alu 1 148 0 5 1743 442 328 0 81 chr3 151827554 151827690 -7772093 - B4 SINE B4 -4 288 164 5 1743 316 0 0 43 chr3 151827729 151827775 -7772008 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 5 1743 448 220 73 0 chr3 151829216 151829325 -7770458 + PB1D7 SINE Alu 1 117 -3 5 1743 245 297 0 60 chr3 151829344 151829463 -7770320 + L1MA5 LINE L1 5825 5936 -367 5 1743 297 0 0 0 chr3 151830093 151830126 -7769657 + (TG)n Simple_repeat Simple_repeat 1 33 0 5 1743 207 0 0 0 chr3 151830126 151830148 -7769635 + (CG)n Simple_repeat Simple_repeat 1 23 0 5 1743 407 315 33 87 chr3 151830183 151830367 -7769416 - B4A SINE B4 -117 175 2 5 1743 745 242 123 15 chr3 151831133 151831393 -7768390 + B4A SINE B4 5 292 0 5 1743 351 0 0 0 chr3 151831432 151831471 -7768312 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 5 1743 616 186 1 36 chr3 151831478 151831606 -7768177 - B2_Mm2 SINE B2 -71 122 2 5 1743 224 265 204 0 chr3 151831710 151831808 -7767975 + PB1D7 SINE Alu 1 118 -2 5 1743 235 283 19 0 chr3 151832048 151832101 -7767682 - B1F1 SINE Alu -94 55 2 5 1743 235 204 20 0 chr3 151832159 151832208 -7767575 + ID SINE ID 2 51 -173 5 1743 315 0 0 0 chr3 151832214 151832249 -7767534 + (CA)n Simple_repeat Simple_repeat 2 36 0 5 1743 1419 262 24 110 chr3 151832274 151832938 -7766845 - L1M2 LINE L1 -1309 4834 4228 5 1743 558 43 0 0 chr3 151833977 151834046 -7765737 + (TG)n Simple_repeat Simple_repeat 1 69 0 5 1743 301 172 138 15 chr3 151834054 151834119 -7765664 - RSINE1 SINE B4 -214 78 6 5 1743 218 344 65 65 chr3 151834341 151834360 -7765423 + B4A SINE B4 2 24 -268 5 1743 940 270 116 115 chr3 151834360 151834971 -7764812 + RLTR18 LTR ERVK 5 616 0 5 1743 218 344 65 65 chr3 151834971 151835119 -7764664 + B4A SINE B4 25 169 -123 5 1743 241 292 14 0 chr3 151835178 151835250 -7764533 + (CA)n Simple_repeat Simple_repeat 2 74 0 5 1743 320 244 33 11 chr3 151835317 151835408 -7764375 - ID_B1 SINE B4 0 224 132 5 1743 292 247 0 135 chr3 151835412 151835501 -7764282 - ID4 SINE ID -6 77 1 5 1743 714 220 8 0 chr3 151835646 151835778 -7764005 + B1F2 SINE Alu 11 143 -6 5 1743 315 289 41 10 chr3 151836112 151836210 -7763573 - PB1D10 SINE Alu -16 101 1 5 1743 252 0 0 0 chr3 151836315 151836343 -7763440 + (TC)n Simple_repeat Simple_repeat 2 29 0 5 1743 918 163 7 0 chr3 151836346 151836487 -7763296 - B1_Mur3 SINE Alu -6 143 2 5 1743 889 231 27 67 chr3 151836706 151836929 -7762854 - B3 SINE B2 0 216 3 5 1743 204 40 0 0 chr3 151836991 151837016 -7762767 + (CA)n Simple_repeat Simple_repeat 2 26 0 5 1743 324 242 99 20 chr3 151837093 151837194 -7762589 + PB1D10 SINE Alu 1 109 -8 5 1743 333 233 282 0 chr3 151837206 151837309 -7762474 + B3A SINE B2 2 133 -65 5 1743 243 0 0 0 chr3 151837320 151837347 -7762436 + (CA)n Simple_repeat Simple_repeat 2 28 0 5 1743 726 12 0 0 chr3 151837347 151837429 -7762354 + (GA)n Simple_repeat Simple_repeat 2 84 0 5 1743 369 229 63 18 chr3 151837622 151837733 -7762050 + PB1D10 SINE Alu 2 117 0 5 1743 522 177 65 150 chr3 151837873 151838026 -7761757 - B1F SINE Alu 0 149 10 5 1743 1209 116 40 0 chr3 151838131 151838304 -7761479 + B2_Mm2 SINE B2 1 180 -15 5 1743 280 114 349 19 chr3 151838336 151838442 -7761341 + B2_Mm2 SINE B2 47 187 -8 5 1743 3580 148 79 50 chr3 151838459 151838746 -7761037 - Lx5 LINE L1 -628 6422 6130 5 1743 741 102 0 0 chr3 151838746 151838854 -7760929 + (TC)n Simple_repeat Simple_repeat 1 108 0 5 1743 3580 148 79 50 chr3 151838854 151839367 -7760416 - Lx5 LINE L1 -921 6129 5599 5 1743 2973 170 63 14 chr3 151839366 151839933 -7759850 + Lx4B LINE L1 6461 7055 -3 5 1743 382 116 174 5 chr3 151840269 151840377 -7759406 - B2_Mm2 SINE B2 -3 192 47 5 1743 1401 80 23 0 chr3 151840424 151840599 -7759184 - B2_Mm2 SINE B2 -14 181 3 5 1743 1863 180 12 3 chr3 151840757 151841086 -7758697 - MTC LTR MaLR -89 332 1 5 1743 360 0 0 0 chr3 151841089 151841129 -7758654 + (TC)n Simple_repeat Simple_repeat 1 40 0 5 1743 442 180 113 1 chr3 151841602 151841697 -7758086 - B1F1 SINE Alu -16 101 1 5 1743 527 262 84 14 chr3 151841913 151842056 -7757727 + RSINE1 SINE B4 5 157 -8 5 1743 234 346 132 19 chr3 151842103 151842209 -7757574 - B1_Mus1 SINE Alu -12 136 19 5 1743 2663 149 67 18 chr3 151842238 151842743 -7757040 - RMER15 LTR ERVL 0 575 46 5 1743 325 280 0 0 chr3 151842803 151842878 -7756905 + ID4 SINE ID 9 83 0 5 1743 255 236 0 0 chr3 151843054 151843126 -7756657 + (TG)n Simple_repeat Simple_repeat 1 72 0 5 1743 2144 173 27 11 chr3 151843131 151843499 -7756284 + ORR1D1 LTR MaLR 1 374 0 5 1743 364 283 113 0 chr3 151843706 151843812 -7755971 + PB1D7 SINE Alu 2 119 -1 5 1743 1215 339 91 20 chr3 151843831 151844571 -7755212 + Lx8 LINE L1 6680 7471 -2 5 1743 32 0 0 0 chr3 151844688 151844720 -7755063 + AT_rich Low_complexity Low_complexity 1 32 0 5 1743 800 171 97 0 chr3 151845423 151845598 -7754185 - B3 SINE B2 -24 192 1 5 1743 225 0 0 0 chr3 151845803 151845828 -7753955 + (ATTG)n Simple_repeat Simple_repeat 1 25 0 5 1743 416 306 37 15 chr3 151845954 151846090 -7753693 + B1F1 SINE Alu 6 144 -5 5 1743 724 259 115 29 chr3 151846306 151846655 -7753128 + L1MB7 LINE L1 5622 6000 -184 5 1743 24 53 0 0 chr3 151847050 151847088 -7752695 + AT_rich Low_complexity Low_complexity 1 38 0 5 1743 402 165 0 0 chr3 151847737 151847816 -7751967 + (CA)n Simple_repeat Simple_repeat 2 80 0 5 1743 369 286 196 7 chr3 151850403 151850415 -7749368 - B3 SINE B2 -40 176 165 5 1743 387 89 0 0 chr3 151850415 151850471 -7749312 + (TG)n Simple_repeat Simple_repeat 1 56 0 5 1743 369 286 196 7 chr3 151850471 151850606 -7749177 - B3 SINE B2 -52 164 2 5 1743 1058 112 128 12 chr3 151850692 151850714 -7749069 - B2_Mm2 SINE B2 -2 193 172 5 1743 189 0 0 0 chr3 151850714 151850735 -7749048 + (TTTA)n Simple_repeat Simple_repeat 3 23 0 5 1743 1058 112 128 12 chr3 151850735 151850884 -7748899 - B2_Mm2 SINE B2 -24 171 3 5 1743 339 85 0 0 chr3 151851582 151851629 -7748154 + (TA)n Simple_repeat Simple_repeat 1 47 0 5 1743 198 0 0 0 chr3 151851629 151851650 -7748133 + (GA)n Simple_repeat Simple_repeat 2 23 0 6 1743 205 213 43 0 chr3 151851762 151851809 -7747974 + (CACG)n Simple_repeat Simple_repeat 4 52 0 6 1743 725 207 89 0 chr3 151853173 151853308 -7746475 - RSINE1 SINE B4 -16 149 3 6 1743 495 301 118 55 chr3 151853527 151853960 -7745823 - L1ME1 LINE L1 -109 6070 5611 6 1743 242 197 42 0 chr3 151854196 151854267 -7745516 - tRNA-Ala-GCY_ tRNA tRNA -1 74 1 6 1743 534 181 0 0 chr3 151854536 151854641 -7745142 + A-rich Low_complexity Low_complexity 1 105 0 6 1743 329 207 0 12 chr3 151855613 151855696 -7744087 + GA-rich Low_complexity Low_complexity 3 84 0 6 1743 478 51 0 0 chr3 151857841 151857900 -7741883 + MTB_Mm LTR MaLR 1 59 -348 6 1743 369 250 18 127 chr3 151858558 151858668 -7741115 + PB1D7 SINE Alu 9 106 -14 6 1743 343 239 59 0 chr3 151858749 151858847 -7740936 + PB1D7 SINE Alu 35 142 -7 6 1743 788 113 0 24 chr3 151858937 151858957 -7740826 - B2_Mm2 SINE B2 -17 178 160 6 1743 3762 18 2 0 chr3 151858957 151859352 -7740431 + MTA_Mm LTR MaLR 1 396 0 6 1743 788 113 0 24 chr3 151859352 151859458 -7740325 - B2_Mm2 SINE B2 -36 159 55 6 1743 350 258 10 42 chr3 151859683 151859802 -7739981 + B1F SINE Alu 4 123 -26 6 1743 468 175 0 0 chr3 151859805 151859902 -7739881 + GA-rich Low_complexity Low_complexity 2 98 0 6 1743 318 258 164 15 chr3 151859902 151860036 -7739747 + HAL1-3A_ME LINE L1 2286 2439 -419 6 1743 415 160 11 11 chr3 151860057 151860152 -7739631 + GA-rich Low_complexity Low_complexity 2 96 0 6 1743 260 238 94 16 chr3 151860165 151860229 -7739554 + ID4_ SINE ID 2 70 -13 6 1743 2233 80 22 34 chr3 151860330 151860652 -7739131 + ORR1A2 LTR MaLR 1 318 -9 6 1743 463 282 113 7 chr3 151860652 151860802 -7738981 + MIR SINE MIR 35 200 -62 6 1743 603 177 8 53 chr3 151861023 151861154 -7738629 + B1_Mur4 SINE Alu 26 150 0 6 1743 183 209 45 23 chr3 151861230 151861274 -7738509 + MIR SINE MIR 48 92 -116 6 1743 542 270 87 0 chr3 151861308 151861434 -7738349 + B1_Mur2 SINE Alu 3 139 -10 6 1743 347 267 6 0 chr3 151861944 151862016 -7737767 - PB1D10 SINE Alu -54 95 21 6 1743 2349 161 75 8 chr3 151862016 151862416 -7737367 + Lx5 LINE L1 6618 7044 -6 6 1743 361 235 204 10 chr3 151862930 151863033 -7736750 + B1_Mur2 SINE Alu 1 123 -26 6 1743 397 232 37 134 chr3 151863320 151863484 -7736299 + MT2B2 LTR ERVL 117 264 -320 6 1743 688 162 6 101 chr3 151863342 151863371 -7736412 + ID_B1 SINE B4 63 222 0 6 1743 1057 56 0 40 chr3 151863371 151863519 -7736264 + B1_Mm SINE Alu 6 147 0 6 1743 25 65 0 0 chr3 151863521 151863567 -7736216 + AT_rich Low_complexity Low_complexity 1 46 0 6 1743 409 286 13 79 chr3 151863637 151863789 -7735994 + B4A SINE B4 125 266 -26 6 1743 423 119 0 0 chr3 151863789 151863856 -7735927 + (CA)n Simple_repeat Simple_repeat 1 67 0 6 1743 293 197 33 0 chr3 151864312 151864373 -7735410 + BC1_Mm scRNA scRNA 3 65 -87 6 1743 243 0 0 0 chr3 151864437 151864464 -7735319 + (CAAA)n Simple_repeat Simple_repeat 1 27 0 6 1743 504 215 0 93 chr3 151864602 151864720 -7735063 + PB1D9 SINE Alu 10 116 -33 6 1743 279 0 0 0 chr3 151864728 151864759 -7735024 + (TG)n Simple_repeat Simple_repeat 1 31 0 6 1743 493 234 106 7 chr3 151865274 151865416 -7734367 + RSINE1 SINE B4 3 158 -7 6 1743 278 242 0 0 chr3 151865641 151865703 -7734080 + MER58B DNA MER1_type 278 339 -2 6 1743 1422 229 90 42 chr3 151866076 151866500 -7733283 + MER82 DNA MER2_type 27 470 -183 6 1743 240 148 36 36 chr3 151866658 151866714 -7733069 + GA-rich Low_complexity Low_complexity 4 59 0 6 1743 399 271 31 39 chr3 151866813 151866940 -7732843 + MER82 DNA MER2_type 528 653 0 6 1743 234 191 0 0 chr3 151866978 151867025 -7732758 + GA-rich Low_complexity Low_complexity 5 51 0 6 1743 259 200 60 0 chr3 151868190 151868240 -7731543 + PB1D10 SINE Alu 65 117 0 6 1743 507 180 11 11 chr3 151869359 151869449 -7730334 + B1_Mur2 SINE Alu 54 143 -6 6 1743 337 349 82 38 chr3 151869665 151869823 -7729960 - B4A SINE B4 -117 175 11 6 1743 238 246 72 0 chr3 151869994 151870063 -7729720 - MIRc SINE MIR -88 180 107 6 1743 2950 103 221 31 chr3 151870613 151871102 -7728681 + MT2B2 LTR ERVL 3 584 0 6 1743 551 209 34 17 chr3 151871160 151871277 -7728506 - PB1D9 SINE Alu 0 120 2 6 1743 442 200 12 0 chr3 151871346 151871426 -7728357 - B3 SINE B2 -134 82 2 6 1743 427 296 110 19 chr3 151871648 151871803 -7727980 + MER20 DNA MER1_type 48 216 -3 6 1743 23 33 0 0 chr3 151873874 151873904 -7725879 + GC_rich Low_complexity Low_complexity 1 30 0 6 1743 548 217 17 0 chr3 151874416 151874531 -7725252 + PB1D9 SINE Alu 2 118 -2 6 1743 359 316 79 0 chr3 151874775 151874889 -7724894 - RSINE1 SINE B4 -31 134 12 6 1743 439 176 161 21 chr3 151875464 151875557 -7724226 - PB1D9 SINE Alu -12 108 3 6 1743 224 286 0 0 chr3 151875576 151875625 -7724158 - B1F SINE Alu -83 66 18 6 1743 671 188 67 9 chr3 151875667 151875814 -7723969 - Lx3C LINE L1 -52 6921 6764 6 1743 363 44 0 0 chr3 151875814 151875859 -7723924 + (CA)n Simple_repeat Simple_repeat 2 46 0 6 1743 671 177 57 0 chr3 151875859 151875895 -7723888 - Lx3C LINE L1 -213 6763 6728 6 1743 363 259 207 20 chr3 151878651 151878801 -7720982 - B3A SINE B2 -16 182 5 6 1743 316 229 0 16 chr3 151878853 151878915 -7720868 - PB1D9 SINE Alu -8 112 52 6 1743 1621 169 181 124 chr3 151878915 151879290 -7720493 - RMER6A LTR ERVK 0 756 267 6 1743 1216 37 0 0 chr3 151879290 151879425 -7720358 - B1_Mus1 SINE Alu -13 135 1 6 1743 703 68 244 8 chr3 151879426 151879545 -7720238 - B1_Mus1 SINE Alu -1 147 1 6 1743 1249 124 43 0 chr3 151879553 151879738 -7720045 - B2_Mm2 SINE B2 -1 194 2 6 1743 1621 167 183 136 chr3 151879738 151879985 -7719798 - RMER6A LTR ERVK -490 266 1 6 1743 180 0 0 0 chr3 151881021 151881041 -7718742 + (TG)n Simple_repeat Simple_repeat 2 21 0 6 1743 637 298 79 5 chr3 151881397 151881586 -7718197 + B4 SINE B4 14 216 -76 6 1743 460 146 50 83 chr3 151881835 151881955 -7717828 - B1_Mur3 SINE Alu -10 138 5 6 1743 186 43 0 0 chr3 151883622 151883645 -7716138 + (TTG)n Simple_repeat Simple_repeat 2 24 0 6 1743 335 333 58 39 chr3 151883958 151884061 -7715722 - RSINE1 SINE B4 -10 155 51 6 1743 822 199 7 7 chr3 151884861 151885003 -7714780 + B1_Mur3 SINE Alu 2 143 -6 6 1743 547 81 0 0 chr3 151885355 151885429 -7714354 - B1_Mus2 SINE Alu -73 74 1 6 1743 656 189 125 87 chr3 151885996 151886204 -7713579 + B3 SINE B2 1 216 0 6 1743 862 162 14 7 chr3 151886962 151887105 -7712678 + B1_Mur4 SINE Alu 1 144 -6 6 1743 377 318 144 26 chr3 151887780 151887965 -7711818 + B4A SINE B4 29 236 -56 6 1743 1272 82 21 21 chr3 151887965 151888151 -7711632 + B2_Mm2 SINE B2 3 188 -7 6 1743 1549 64 16 5 chr3 151889841 151890030 -7709753 + B2_Mm1t SINE B2 1 191 -2 6 1743 276 263 89 20 chr3 151890242 151890343 -7709440 - L1MC4 LINE L1 -1053 6989 6882 6 1743 624 27 0 0 chr3 151890384 151890458 -7709325 + (TC)n Simple_repeat Simple_repeat 1 74 0 6 1743 764 223 85 6 chr3 151890564 151890740 -7709043 + B3 SINE B2 22 211 -5 6 1743 872 197 7 20 chr3 151891375 151891525 -7708258 + B1_Mus1 SINE Alu 1 148 0 6 1743 1099 60 0 29 chr3 151892096 151892233 -7707550 + B1_Mus2 SINE Alu 2 134 -13 6 1743 233 329 14 0 chr3 151892283 151892356 -7707427 - MER94 DNA AcHobo 0 134 61 6 1743 25 51 0 0 chr3 151892701 151892740 -7707043 + AT_rich Low_complexity Low_complexity 1 39 0 6 1743 321 173 15 14 chr3 151892746 151892818 -7706965 - B2_Mm2 SINE B2 -95 121 47 6 1743 1109 146 41 0 chr3 151892831 151893002 -7706781 - B2_Mm1t SINE B2 -14 179 2 6 1743 212 284 200 22 chr3 151893387 151893477 -7706306 + B4A SINE B4 1 106 -186 6 1743 326 147 104 26 chr3 151893545 151893622 -7706161 + RLTR25B LTR ERVK 427 509 -519 6 1743 833 56 0 0 chr3 151893558 151893665 -7706118 + B1_Mm SINE Alu 41 147 0 6 1743 1674 32 0 16 chr3 151893793 151893985 -7705798 + B2_Mm1a SINE B2 2 190 -3 6 1743 499 211 48 81 chr3 151894161 151894285 -7705498 + PB1D9 SINE Alu 1 120 0 6 1743 210 302 57 23 chr3 151894504 151894592 -7705191 + ID_B1 SINE B4 81 171 -53 6 1743 320 245 98 19 chr3 151894513 151894623 -7705160 + PB1D10 SINE Alu 5 117 0 6 1743 206 81 27 0 chr3 151894996 151895033 -7704750 + (TTTTTG)n Simple_repeat Simple_repeat 3 40 0 6 1743 21 36 0 0 chr3 151897963 151897991 -7701792 + AT_rich Low_complexity Low_complexity 1 28 0 6 1743 180 0 0 0 chr3 151898714 151898734 -7701049 + (TG)n Simple_repeat Simple_repeat 1 20 0 6 1743 216 0 0 0 chr3 151898734 151898757 -7701026 + (GA)n Simple_repeat Simple_repeat 1 24 0 6 1743 25 0 0 0 chr3 151899910 151899935 -7699848 + AT_rich Low_complexity Low_complexity 1 25 0 6 1743 371 234 104 21 chr3 151900071 151900167 -7699616 - PB1D9 SINE Alu -15 105 2 6 1743 600 178 235 7 chr3 151901944 151902080 -7697703 + B2_Mm2 SINE B2 3 169 -26 6 1743 207 214 0 0 chr3 151902081 151902123 -7697660 + (TA)n Simple_repeat Simple_repeat 1 42 0 6 1743 360 198 61 71 chr3 151902207 151902305 -7697478 - B3A SINE B2 -60 138 42 6 1743 214 283 38 0 chr3 151902330 151902383 -7697400 - ID SINE ID -167 57 3 6 1743 391 215 12 12 chr3 151902709 151902789 -7696994 + ID4_ SINE ID 1 80 -3 6 1743 351 234 189 0 chr3 151903540 151903651 -7696132 - B1_Mur2 SINE Alu -13 136 5 7 1743 650 142 0 32 chr3 151903897 151904021 -7695762 + B1_Mus2 SINE Alu 28 147 0 7 1743 312 221 244 0 chr3 151904025 151904111 -7695672 - PB1D7 SINE Alu -13 107 1 7 1743 658 202 0 0 chr3 151904432 151904551 -7695232 + B1_Mus2 SINE Alu 5 123 -24 7 1743 295 289 0 88 chr3 151904595 151904686 -7695097 + ID_B1 SINE B4 84 166 -58 7 1743 834 256 73 11 chr3 151906004 151906212 -7693571 + B3 SINE B2 1 194 -1 7 1743 419 260 63 0 chr3 151906212 151906339 -7693444 - Tigger7 DNA MER2_type -2063 428 294 7 1743 624 238 99 6 chr3 151906341 151906502 -7693281 - B3 SINE B2 -4 212 37 7 1743 335 299 20 59 chr3 151906510 151906663 -7693120 + RMER30 DNA MER1_type 15 161 -41 7 1743 22 0 0 0 chr3 151906988 151907010 -7692773 + AT_rich Low_complexity Low_complexity 1 22 0 7 1743 238 292 45 45 chr3 151907365 151907476 -7692307 - MIR SINE MIR -73 189 79 7 1743 218 81 26 26 chr3 151907627 151907665 -7692118 + MIRc SINE MIR 88 125 -143 7 1743 1302 48 0 0 chr3 151907778 151907924 -7691859 - B1_Mus2 SINE Alu 0 147 2 7 1743 380 274 95 16 chr3 151907972 151908098 -7691685 - RSINE1 SINE B4 -28 137 2 7 1743 1384 58 53 0 chr3 151908540 151908711 -7691072 + B2_Mm2 SINE B2 2 181 -14 7 1743 1155 68 49 0 chr3 151908712 151908875 -7690908 + B2_Mm1t SINE B2 1 171 -22 7 1743 1454 82 38 0 chr3 151908997 151909181 -7690602 + B2_Mm2 SINE B2 1 191 -4 7 1743 1247 76 88 0 chr3 151909361 151909532 -7690251 - B2_Mm2 SINE B2 -8 187 2 7 1743 721 197 90 19 chr3 151909783 151909938 -7689845 + B4 SINE B4 2 167 -125 7 1743 320 270 11 11 chr3 151909870 151909960 -7689823 + B1_Mus2 SINE Alu 14 103 -44 7 1743 209 218 37 37 chr3 151910078 151910159 -7689624 + CT-rich Low_complexity Low_complexity 6 86 0 7 1743 307 295 0 87 chr3 151910376 151910491 -7689292 - ID_B1 SINE B4 -25 199 95 7 1743 230 189 0 0 chr3 151910730 151910767 -7689016 + tRNA-Ala-GCY_ tRNA tRNA 12 48 -27 7 1743 194 30 91 0 chr3 151911440 151911473 -7688310 + (CAAAA)n Simple_repeat Simple_repeat 5 40 0 7 1743 947 169 7 0 chr3 151911892 151912034 -7687749 - B1_Mur2 SINE Alu -6 143 1 7 1744 891 109 17 33 chr3 151912909 151913090 -7686693 + CT-rich Low_complexity Low_complexity 1 178 0 7 1744 992 175 0 0 chr3 151913095 151913238 -7686545 - B1_Mur3 SINE Alu -5 144 2 7 1744 416 280 0 0 chr3 151913560 151913653 -7686130 + B1F2 SINE Alu 50 142 -7 7 1744 339 25 0 0 chr3 151914636 151914676 -7685107 + (TG)n Simple_repeat Simple_repeat 2 41 0 7 1744 22 70 0 0 chr3 151914867 151914910 -7684873 + AT_rich Low_complexity Low_complexity 1 43 0 7 1744 661 276 40 34 chr3 151915221 151915397 -7684386 + B3 SINE B2 2 178 -38 7 1744 496 301 157 29 chr3 151916171 151916451 -7683332 - MER44A DNA MER2_type -17 322 7 7 1744 1755 26 0 0 chr3 151917700 151917889 -7681894 + B2_Mm1a SINE B2 2 190 -3 7 1744 297 0 0 0 chr3 151918168 151918201 -7681582 + (CA)n Simple_repeat Simple_repeat 2 34 0 7 1744 351 0 0 0 chr3 151918201 151918239 -7681544 + (GA)n Simple_repeat Simple_repeat 2 40 0 7 1744 865 216 0 13 chr3 151918361 151918511 -7681272 + B1_Mur1 SINE Alu 2 149 0 7 1744 1188 62 0 14 chr3 151918519 151918665 -7681118 + B1_Mus2 SINE Alu 1 144 -3 7 1744 36 40 0 0 chr3 151918795 151918845 -7680938 + AT_rich Low_complexity Low_complexity 1 50 0 7 1744 206 118 0 0 chr3 151919275 151919309 -7680474 + (A)n Simple_repeat Simple_repeat 1 34 0 7 1744 677 274 86 91 chr3 151919317 151919430 -7680353 - L1MC LINE L1 -622 5711 5598 7 1744 723 145 186 0 chr3 151919430 151919554 -7680229 + B1_Mus2 SINE Alu 1 147 0 7 1744 677 274 86 91 chr3 151919554 151919825 -7679958 - L1MC LINE L1 -736 5597 5330 7 1744 475 209 26 43 chr3 151919845 151919960 -7679823 - PB1D10 SINE Alu 0 117 5 7 1744 235 306 29 58 chr3 151920004 151920108 -7679675 - L2b LINE L2 -3 3372 3272 7 1744 947 271 39 0 chr3 151920511 151920718 -7679065 - B4A SINE B4 -77 215 1 7 1744 817 258 11 21 chr3 151921514 151921704 -7678079 + B3 SINE B2 5 192 -24 7 1744 255 217 0 77 chr3 151921693 151921758 -7678025 + B3 SINE B2 151 210 -6 7 1744 523 289 21 7 chr3 151921970 151922113 -7677670 - Charlie1a DNA MER1_type -270 1185 1041 7 1744 243 0 0 0 chr3 151922343 151922370 -7677413 + (T)n Simple_repeat Simple_repeat 1 27 0 7 1744 1357 14 0 0 chr3 151922375 151922522 -7677261 - B1_Mm SINE Alu 0 147 1 7 1744 316 218 184 0 chr3 151922684 151922771 -7677012 + B3 SINE B2 2 104 -112 7 1744 266 275 99 106 chr3 151922905 151923198 -7676585 - B4 SINE B4 0 292 2 7 1744 1473 80 43 0 chr3 151923612 151923799 -7675984 - B2_Mm2 SINE B2 0 195 1 7 1744 457 237 69 41 chr3 151923819 151923964 -7675819 - B1F2 SINE Alu 0 149 1 7 1744 260 177 173 25 chr3 151924147 151924228 -7675555 + PB1D7 SINE Alu 28 120 0 7 1744 292 358 45 9 chr3 151924277 151924387 -7675396 + PB1D10 SINE Alu 4 117 0 7 1744 288 306 72 39 chr3 151924523 151924676 -7675107 - MTD LTR MaLR -86 333 176 7 1744 615 226 422 12 chr3 151925361 151925600 -7674183 - MTD LTR MaLR -16 403 67 7 1744 636 160 119 22 chr3 151925880 151926014 -7673769 - B1_Mus2 SINE Alu 0 147 1 7 1744 477 246 378 0 chr3 151926210 151926362 -7673421 + B3 SINE B2 5 214 -2 7 1744 1158 96 0 14 chr3 151926412 151926560 -7673223 + B1_Mus1 SINE Alu 2 147 -1 7 1744 378 129 16 16 chr3 151926959 151927022 -7672761 - B1_Mur2 SINE Alu -20 129 67 7 1744 253 263 70 132 chr3 151927438 151927552 -7672231 + PB1 SINE Alu 1 107 -20 7 1744 218 136 23 0 chr3 151928172 151928216 -7671567 + (TATATG)n Simple_repeat Simple_repeat 2 46 0 7 1744 216 0 0 0 chr3 151928646 151928670 -7671113 + (CAGCC)n Simple_repeat Simple_repeat 3 26 0 7 1744 24 67 0 0 chr3 151928739 151928784 -7670999 + GC_rich Low_complexity Low_complexity 1 45 0 7 1744 311 294 49 0 chr3 151929501 151929603 -7670180 + ID_B1 SINE B4 111 217 -7 7 1744 1438 87 5 26 chr3 151930059 151930249 -7669534 - B2_Mm2 SINE B2 -8 187 2 7 1744 694 180 50 7 chr3 151930411 151930551 -7669232 + URR1A DNA MER1_type 81 226 0 7 1744 291 310 22 44 chr3 151930594 151930729 -7669054 + MTE2b LTR MaLR 85 216 -163 7 1744 364 206 0 0 chr3 151930727 151930800 -7668983 - B1_Mur1 SINE Alu -5 144 72 7 1744 260 295 125 0 chr3 151930862 151930974 -7668809 + MTE2b LTR MaLR 254 379 0 7 1744 778 272 129 23 chr3 151931469 151931732 -7668051 - B4 SINE B4 0 292 2 7 1744 327 351 99 29 chr3 151931896 151932210 -7667573 - L2 LINE L2 -379 3040 2705 7 1744 546 16 0 0 chr3 151932287 151932350 -7667433 + (TTTC)n Simple_repeat Simple_repeat 2 64 0 7 1744 1252 36 0 7 chr3 151932360 151932501 -7667282 - B1_Mus2 SINE Alu -7 140 1 7 1744 358 295 0 0 chr3 151932700 151932778 -7667005 - ID4 SINE ID -3 80 3 7 1744 1025 122 20 40 chr3 151932989 151933197 -7666586 + B2_Mm2 SINE B2 2 209 -7 7 1744 539 209 76 0 chr3 151933210 151933368 -7666415 + Lx9 LINE L1 7468 7637 -7 7 1744 318 212 92 0 chr3 151933413 151933504 -7666279 + B1F SINE Alu 42 148 -1 7 1744 418 171 181 0 chr3 151933752 151933857 -7665926 + B1_Mur1 SINE Alu 26 149 0 7 1744 207 0 0 0 chr3 151933862 151933885 -7665898 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 7 1744 298 313 41 47 chr3 151934196 151934367 -7665416 + B4A SINE B4 3 172 -120 7 1744 315 240 40 32 chr3 151934533 151934658 -7665125 + MLT1F1 LTR MaLR 241 366 -203 7 1744 1007 21 340 0 chr3 151934706 151934847 -7664936 - B2_Mm1t SINE B2 -4 189 1 7 1744 645 97 175 9 chr3 151935806 151935920 -7663863 + B1_Mus2 SINE Alu 15 147 0 7 1744 225 267 67 0 chr3 151936133 151936193 -7663590 + B4A SINE B4 82 145 -147 7 1744 474 101 0 0 chr3 151936240 151936309 -7663474 + (CA)n Simple_repeat Simple_repeat 2 70 0 7 1744 25 65 0 0 chr3 151936929 151936975 -7662808 + AT_rich Low_complexity Low_complexity 1 46 0 7 1744 194 333 48 24 chr3 151939907 151940033 -7659750 + MIRc SINE MIR 38 166 -102 7 1744 246 116 0 0 chr3 151940034 151940077 -7659706 + (TG)n Simple_repeat Simple_repeat 2 44 0 7 1744 851 157 15 0 chr3 151940077 151940211 -7659572 - B1_Mur3 SINE Alu -7 142 7 7 1744 1560 43 16 21 chr3 151940369 151940559 -7659224 - B2_Mm2 SINE B2 -6 189 1 7 1744 1256 57 0 0 chr3 151940623 151940780 -7659003 + B2_Mm2 SINE B2 2 158 -37 7 1744 345 47 0 0 chr3 151940781 151940824 -7658959 + (TAAA)n Simple_repeat Simple_repeat 3 45 0 7 1744 326 233 187 43 chr3 151942207 151942346 -7657437 - ORR1D1 LTR MaLR -211 163 5 7 1744 287 303 207 0 chr3 151942557 151942652 -7657131 + ID_B1 SINE B4 16 127 -97 7 1744 1007 88 0 7 chr3 151942652 151942801 -7656982 + (GGA)n Simple_repeat Simple_repeat 2 149 0 7 1744 287 303 207 0 chr3 151942801 151942850 -7656933 + ID_B1 SINE B4 128 189 -35 7 1744 1555 250 152 63 chr3 151942990 151943399 -7656384 - L1_Mur3 LINE L1 -2507 3373 2880 7 1744 815 212 78 11 chr3 151943399 151943590 -7656193 + B3 SINE B2 2 205 -11 7 1744 1555 250 152 63 chr3 151943590 151944003 -7655780 - L1_Mur3 LINE L1 -3001 2879 2478 7 1744 473 274 123 41 chr3 151944016 151944187 -7655596 - B3A SINE B2 -9 186 2 7 1744 2265 272 68 30 chr3 151944204 151945140 -7654643 - L1_Mur3 LINE L1 -3466 2414 1443 7 1744 1350 232 125 0 chr3 151945147 151945500 -7654283 + MTD LTR MaLR 1 397 -22 7 1744 397 313 120 46 chr3 151945585 151945826 -7653957 + B4 SINE B4 16 274 -18 8 1744 201 240 0 0 chr3 151945928 151945978 -7653805 + (CAGAGA)n Simple_repeat Simple_repeat 2 51 0 8 1744 242 343 157 0 chr3 151946307 151946447 -7653336 - MIR SINE MIR -72 190 29 8 1744 1239 48 0 0 chr3 151946847 151946993 -7652790 + B1_Mm SINE Alu 2 147 0 8 1744 44 35 0 0 chr3 151946993 151947051 -7652732 + AT_rich Low_complexity Low_complexity 1 58 0 8 1744 709 133 80 106 chr3 151947192 151947343 -7652440 + B1_Mus1 SINE Alu 1 147 -1 8 1744 342 0 0 0 chr3 151947349 151947387 -7652396 + (CCAA)n Simple_repeat Simple_repeat 1 38 0 8 1744 432 243 17 43 chr3 151947466 151947582 -7652201 + PB1D7 SINE Alu 8 120 0 8 1744 531 202 45 27 chr3 151947973 151948085 -7651698 - PB1D9 SINE Alu -5 115 2 8 1744 276 250 18 59 chr3 151948352 151948522 -7651261 + (CTGTG)n Simple_repeat Simple_repeat 3 165 0 8 1744 1468 72 0 25 chr3 151948683 151948883 -7650900 + B2_Mm2 SINE B2 1 195 0 8 1744 343 281 188 18 chr3 151950685 151950855 -7648928 - ID_B1 SINE B4 0 224 26 8 1744 428 289 43 29 chr3 151951583 151951722 -7648061 + B1F1 SINE Alu 2 142 -7 8 1744 1000 108 140 0 chr3 151952362 151952519 -7647264 + B2_Mm1t SINE B2 1 179 -14 8 1744 305 166 19 33 chr3 151952584 151952658 -7647125 + B2_Mm2 SINE B2 46 123 -75 8 1744 189 0 0 0 chr3 151952666 151952687 -7647096 + (TAAA)n Simple_repeat Simple_repeat 1 21 0 8 1744 484 194 212 58 chr3 151952716 151952828 -7646955 + B3A SINE B2 27 153 -40 8 1744 483 48 0 0 chr3 151952828 151952890 -7646893 + (CA)n Simple_repeat Simple_repeat 1 62 0 8 1744 335 194 212 58 chr3 151952890 151952914 -7646869 + B2_Mm1t SINE B2 154 184 -9 8 1744 279 286 9 84 chr3 151952968 151953075 -7646708 - B1_Mur1 SINE Alu -2 147 20 8 1744 21 0 0 0 chr3 151953708 151953729 -7646054 + AT_rich Low_complexity Low_complexity 1 21 0 8 1744 231 36 0 0 chr3 151954080 151954108 -7645675 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 8 1744 1236 48 0 0 chr3 151954287 151954434 -7645349 + B1_Mus1 SINE Alu 2 148 0 8 1744 239 253 24 37 chr3 151954831 151954913 -7644870 - ID4_ SINE ID -1 82 2 8 1744 362 272 35 0 chr3 151955129 151955243 -7644540 - L1MB7 LINE L1 -257 5927 5810 8 1744 374 262 19 130 chr3 151955286 151955448 -7644335 + B3 SINE B2 58 201 -15 8 1744 276 200 0 0 chr3 151955450 151955510 -7644273 + (CA)n Simple_repeat Simple_repeat 1 60 0 8 1744 761 266 202 24 chr3 151955556 151955972 -7643811 - L1MB7 LINE L1 -413 5771 5282 8 1744 549 179 0 0 chr3 151956091 151956186 -7643597 + B1_Mur1 SINE Alu 55 149 0 8 1744 267 244 62 25 chr3 151956206 151956286 -7643497 - L1M4 LINE L1 -6139 403 321 8 1744 254 211 111 14 chr3 151956975 151957047 -7642736 - B4A SINE B4 -200 92 14 8 1744 221 294 88 0 chr3 151956992 151957060 -7642723 - ID2 SINE ID -9 74 1 8 1744 360 206 227 0 chr3 151957172 151957269 -7642514 + RSINE1 SINE B4 3 121 -44 8 1744 1211 56 0 0 chr3 151957958 151958102 -7641681 + B1_Mus1 SINE Alu 5 148 0 8 1744 186 71 0 0 chr3 151958103 151958131 -7641652 + (CAAAAA)n Simple_repeat Simple_repeat 5 32 0 8 1744 369 239 442 0 chr3 151958286 151958427 -7641356 - B3 SINE B2 -6 210 8 8 1744 945 134 249 6 chr3 151958700 151958873 -7640910 + B3 SINE B2 2 216 0 8 1744 250 248 138 37 chr3 151959140 151959249 -7640534 + RMER15 LTR ERVL 347 466 -109 8 1744 276 281 33 89 chr3 151959295 151959385 -7640398 + PB1D10 SINE Alu 18 102 -18 8 1744 252 247 121 66 chr3 151959460 151959551 -7640232 - PB1D9 SINE Alu -1 119 24 8 1744 413 239 23 0 chr3 151959519 151959607 -7640176 - B3 SINE B2 -122 94 5 8 1744 419 207 57 11 chr3 151959637 151959725 -7640058 + PB1D7 SINE Alu 24 115 -5 8 1744 563 233 163 0 chr3 151959750 151959922 -7639861 + B3 SINE B2 2 201 -15 8 1744 342 115 0 0 chr3 151959954 151960006 -7639777 + (CA)n Simple_repeat Simple_repeat 1 52 0 8 1744 342 207 23 27 chr3 151960452 151960538 -7639245 - B3 SINE B2 -86 130 48 8 1744 625 195 85 0 chr3 151960754 151960872 -7638911 - B1_Mur2 SINE Alu -10 139 12 8 1744 263 231 103 0 chr3 151960889 151960967 -7638816 + PB1D9 SINE Alu 35 120 0 8 1744 811 68 26 0 chr3 151961261 151961378 -7638405 - B1_Mus1 SINE Alu -24 124 5 8 1744 299 206 165 10 chr3 151961286 151961389 -7638394 - RLTR25A LTR ERVK -531 572 454 8 1744 291 299 68 8 chr3 151961965 151962083 -7637700 + PB1 SINE Alu 1 125 -2 8 1744 257 261 0 92 chr3 151962155 151962231 -7637552 + ID4 SINE ID 5 73 -10 8 1744 267 103 0 0 chr3 151962377 151962416 -7637367 + (T)n Simple_repeat Simple_repeat 1 39 0 8 1744 787 82 0 35 chr3 151962416 151962530 -7637253 - B1_Mus1 SINE Alu 0 148 39 8 1744 414 365 20 20 chr3 151962533 151962681 -7637102 - B3A SINE B2 -36 162 15 8 1744 327 167 0 0 chr3 151962887 151962953 -7636830 + (CA)n Simple_repeat Simple_repeat 2 67 0 8 1744 1637 192 23 72 chr3 151962989 151963377 -7636406 + RLTR40 LTR ERVK 436 804 -13 8 1744 2315 167 15 20 chr3 151963697 151964100 -7635683 - MTC LTR MaLR -20 401 1 8 1744 422 245 108 0 chr3 151964100 151964193 -7635590 + B3 SINE B2 113 216 0 8 1744 441 171 14 0 chr3 151964204 151964274 -7635509 + B1_Mur3 SINE Alu 1 71 -78 8 1744 530 292 8 0 chr3 151964397 151964527 -7635256 + ID_B1 SINE B4 84 214 -10 8 1744 2681 121 2 0 chr3 151964577 151964982 -7634801 - Lx4A LINE L1 -638 6420 6015 8 1744 3206 122 27 10 chr3 151964982 151965470 -7634313 + Lx4A LINE L1 6441 6936 -122 8 1744 345 47 0 0 chr3 151965471 151965514 -7634269 + (TG)n Simple_repeat Simple_repeat 1 43 0 8 1744 415 298 7 30 chr3 151965583 151965718 -7634065 - B1_Mur4 SINE Alu -16 134 3 8 1744 427 319 94 9 chr3 151966379 151966588 -7633195 + MIR SINE MIR 12 241 -27 8 1744 306 0 0 0 chr3 151967323 151967357 -7632426 + (T)n Simple_repeat Simple_repeat 1 34 0 8 1744 201 322 0 88 chr3 151967364 151967466 -7632317 + MIRm SINE MIR 40 132 -144 8 1744 357 207 80 11 chr3 151967848 151967936 -7631847 - B1F1 SINE Alu -2 147 54 8 1744 1289 116 16 0 chr3 151968491 151968681 -7631102 + B2_Mm2 SINE B2 2 194 -1 8 1744 219 342 8 116 chr3 151969956 151970017 -7629766 + PB1D10 SINE Alu 2 50 -67 8 1744 543 31 0 0 chr3 151970017 151970082 -7629701 + (TATG)n Simple_repeat Simple_repeat 2 66 0 8 1744 563 222 96 7 chr3 151970086 151970222 -7629561 - RSINE1 SINE B4 -15 150 3 8 1744 219 342 8 116 chr3 151970222 151970284 -7629499 + PB1D10 SINE Alu 51 111 -6 8 1744 230 225 99 0 chr3 151970820 151970891 -7628892 + ID4 SINE ID 2 79 -4 8 1744 522 192 20 10 chr3 151971879 151971979 -7627804 - RSINE1 SINE B4 -31 134 34 8 1744 606 153 134 24 chr3 151972006 151972133 -7627650 - B1_Mur2 SINE Alu -7 142 2 8 1744 213 284 89 22 chr3 151972303 151972393 -7627390 - PB1D10 SINE Alu 0 117 22 8 1744 360 133 0 0 chr3 151972542 151972602 -7627181 + (TG)n Simple_repeat Simple_repeat 2 61 0 8 1744 399 336 79 41 chr3 151972821 151973113 -7626670 - Lx8 LINE L1 -130 7343 7041 8 1744 724 287 11 0 chr3 151973180 151973354 -7626429 - B4A SINE B4 -64 228 53 8 1744 803 178 0 12 chr3 151973766 151973931 -7625852 + GA-rich Low_complexity Low_complexity 3 165 0 8 1744 324 70 0 0 chr3 151974080 151974123 -7625660 + (GGGA)n Simple_repeat Simple_repeat 3 45 0 8 1744 606 28 0 0 chr3 151974237 151974309 -7625474 + (GA)n Simple_repeat Simple_repeat 2 73 0 8 1744 699 66 0 0 chr3 151974608 151974699 -7625084 + ORR1A3 LTR MaLR 16 106 -221 8 1744 929 67 0 0 chr3 151974696 151974815 -7624968 + ORR1A3 LTR MaLR 208 326 0 8 1744 477 341 73 11 chr3 151975166 151975344 -7624439 + B4A SINE B4 20 208 -84 8 1744 277 297 27 0 chr3 151975439 151975513 -7624270 + B4A SINE B4 215 290 -2 8 1744 642 307 35 28 chr3 151976366 151976654 -7623129 + B4A SINE B4 1 290 -2 8 1744 277 302 23 23 chr3 151977059 151977188 -7622595 - B1F SINE Alu -7 142 14 8 1744 268 311 0 32 chr3 151977236 151977329 -7622454 - MIR SINE MIR -170 92 3 8 1744 22 35 0 0 chr3 151977402 151977431 -7622352 + AT_rich Low_complexity Low_complexity 1 29 0 8 1744 451 262 45 28 chr3 151977439 151977616 -7622167 + B3A SINE B2 3 182 -16 8 1744 840 188 0 0 chr3 151977619 151977924 -7621859 + (CA)n Simple_repeat Simple_repeat 1 305 0 8 1744 798 197 0 0 chr3 151977958 151978204 -7621579 + (CA)n Simple_repeat Simple_repeat 1 246 0 8 1744 843 156 0 0 chr3 151978251 151978379 -7621404 + B1_Mus2 SINE Alu 19 146 -1 8 1744 262 290 18 45 chr3 151978398 151978510 -7621273 + PB1D10 SINE Alu 2 110 -7 8 1744 395 191 0 0 chr3 151979014 151979082 -7620701 + B3 SINE B2 12 79 -137 8 1744 1423 60 16 0 chr3 151979134 151979319 -7620464 + B2_Mm2 SINE B2 6 193 -2 8 1744 309 352 97 14 chr3 151979334 151979478 -7620305 + HAL1-3A_ME LINE L1 2284 2439 -419 8 1744 207 140 0 107 chr3 151979480 151979536 -7620247 + GA-rich Low_complexity Low_complexity 1 50 0 8 1744 518 283 79 0 chr3 151979538 151979690 -7620093 + B4A SINE B4 7 170 -122 8 1744 249 309 0 0 chr3 151979979 151980063 -7619720 + G-rich Low_complexity Low_complexity 4 87 0 8 1744 768 82 0 0 chr3 151980065 151980162 -7619621 + B1_Mur3 SINE Alu 42 138 -11 8 1744 409 246 135 0 chr3 151980165 151980291 -7619492 - B3A SINE B2 -55 143 1 8 1744 297 217 23 3 chr3 151980397 151980470 -7619313 + B1_Mur1 SINE Alu 62 135 -12 8 1744 189 0 0 0 chr3 151980508 151980529 -7619254 + (TATG)n Simple_repeat Simple_repeat 1 21 0 8 1744 236 314 58 0 chr3 151980923 151981009 -7618774 - MER5A DNA MER1_type -5 184 94 8 1744 895 269 5 0 chr3 151981136 151981344 -7618439 + B3 SINE B2 5 213 -3 9 1744 456 185 22 125 chr3 151981407 151981543 -7618240 + B1_Mur1 SINE Alu 28 149 0 9 1744 2917 41 6 0 chr3 151981571 151981915 -7617868 + MTA_Mm LTR MaLR 1 346 0 9 1744 8021 63 9 69 chr3 151981917 151983085 -7616698 + MTA_Mm-int LTR MaLR 1 1098 0 9 1744 3248 46 18 3 chr3 151983085 151983475 -7616308 + MTA_Mm LTR MaLR 1 396 0 9 1744 871 265 95 29 chr3 151983793 151984108 -7615675 + MTA_Mm-int LTR MaLR 22 357 -1223 9 1744 799 138 29 14 chr3 151984113 151984253 -7615530 + B1_Mus1 SINE Alu 7 148 0 9 1744 260 284 63 0 chr3 151984973 151985068 -7614715 + MLT1D LTR MaLR 374 474 -31 9 1744 232 322 43 11 chr3 151985179 151985273 -7614510 - BC1_Mm scRNA scRNA -55 97 1 9 1744 213 39 0 0 chr3 151985506 151985532 -7614251 + (CAGA)n Simple_repeat Simple_repeat 3 28 0 9 1744 429 36 0 0 chr3 151985532 151985586 -7614197 + (CA)n Simple_repeat Simple_repeat 2 56 0 9 1744 717 236 14 27 chr3 151985593 151985741 -7614042 - ID_B1 SINE B4 -52 172 27 9 1744 290 295 39 0 chr3 151985683 151985761 -7614022 - ID4_ SINE ID 0 83 3 9 1744 6693 18 1 1 chr3 151986103 151986845 -7612938 + RLTR4_Mm LTR ERV1 1 742 0 9 1744 68680 15 6 0 chr3 151986845 151994404 -7605379 + RLTR4_MM-int LTR ERV1 1 7601 0 9 1744 6693 18 1 1 chr3 151994404 151995146 -7604637 + RLTR4_Mm LTR ERV1 1 742 0 9 1744 256 275 88 40 chr3 151995411 151995536 -7604247 - B3 SINE B2 0 216 86 9 1744 296 302 10 20 chr3 151995614 151995712 -7604071 - B3A SINE B2 -90 108 12 9 1744 365 252 9 53 chr3 151996043 151996156 -7603627 + PB1 SINE Alu 3 110 -17 9 1744 401 181 235 38 chr3 151997229 151997361 -7602422 - RSINE1 SINE B4 -6 159 2 9 1744 25 31 0 0 chr3 151997575 151997607 -7602176 + AT_rich Low_complexity Low_complexity 1 32 0 9 1744 276 253 72 48 chr3 151997672 151997755 -7602028 - B3 SINE B2 -131 85 1 9 1744 1682 27 0 0 chr3 151997796 151997983 -7601800 - B2_Mm1a SINE B2 -6 187 1 9 1744 325 266 96 17 chr3 151998604 151998719 -7601064 + B3 SINE B2 93 216 0 9 1744 254 309 200 109 chr3 151998982 151999247 -7600536 - B4 SINE B4 -3 289 1 9 1744 233 320 105 52 chr3 151999325 151999516 -7600267 + L1M3 LINE L1 5696 5896 -284 9 1744 2704 139 9 9 chr3 151999546 151999980 -7599803 + RMER13B LTR ERVK 1 434 -474 9 1744 1530 178 18 45 chr3 152000004 152000386 -7599397 + RMER13B LTR ERVK 451 822 -86 1 1744 291 224 90 26 chr3 152000539 152000617 -7599166 + ID4_ SINE ID 1 83 0 2 1744 636 225 72 0 chr3 152000885 152001023 -7598760 + B1_Mur1 SINE Alu 2 149 0 3 1744 1562 43 32 0 chr3 152001424 152001611 -7598172 + B2_Mm1t SINE B2 1 193 0 4 1744 854 161 150 35 chr3 152001675 152001875 -7597908 - URR1B DNA MER1_type 0 225 3 5 1744 848 196 75 10 chr3 152002007 152002208 -7597575 + B3 SINE B2 3 216 0 6 1744 270 0 0 0 chr3 152002655 152002685 -7597098 + (CA)n Simple_repeat Simple_repeat 2 31 0 7 1744 433 236 27 0 chr3 152002690 152002800 -7596983 - ID_B1 SINE B4 -18 206 94 8 1744 284 247 24 112 chr3 152002882 152002906 -7596877 + ID_B1 SINE B4 70 223 -1 9 1744 453 219 7 55 chr3 152002906 152003051 -7596732 + B1F SINE Alu 10 147 -2 1 1744 431 209 0 115 chr3 152003604 152003734 -7596049 + MT2B LTR ERVL 150 264 -337 1 1744 986 51 15 0 chr3 152003627 152003764 -7596019 + B1_Mm SINE Alu 6 144 -3 1 1744 225 0 0 0 chr3 152003764 152003789 -7595994 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 1 1744 25 31 0 0 chr3 152004060 152004092 -7595691 + AT_rich Low_complexity Low_complexity 1 32 0 1 1744 452 197 217 25 chr3 152004180 152004300 -7595483 + B1_Mur3 SINE Alu 7 149 0 1 1744 186 43 0 0 chr3 152004301 152004324 -7595459 + (A)n Simple_repeat Simple_repeat 1 23 0 1 1744 388 331 96 7 chr3 152004340 152004486 -7595297 + B3A SINE B2 14 172 -26 1 1744 311 96 19 0 chr3 152004748 152004800 -7594983 + (TA)n Simple_repeat Simple_repeat 1 53 0 1 1744 186 43 0 0 chr3 152004863 152004886 -7594897 + (TTC)n Simple_repeat Simple_repeat 2 24 0 1 1744 847 160 0 0 chr3 152004886 152005030 -7594753 - B1_Mur3 SINE Alu 0 149 6 2 1744 566 246 0 0 chr3 152005070 152005204 -7594579 - ID_B1 SINE B4 -5 219 86 2 1744 691 241 26 38 chr3 152005204 152005455 -7594328 + RLTR12B LTR ERVK 1 245 -283 2 1744 653 252 189 25 chr3 152005813 152006131 -7593652 - ORR1D2 LTR MaLR 0 370 1 2 1744 222 118 0 0 chr3 152006132 152006166 -7593617 + (TG)n Simple_repeat Simple_repeat 1 34 0 2 1744 762 216 9 135 chr3 152006167 152006397 -7593386 - B3 SINE B2 -14 202 2 2 1744 198 0 0 0 chr3 152006415 152006437 -7593346 + (TTA)n Simple_repeat Simple_repeat 1 22 0 2 1744 221 250 0 0 chr3 152006441 152006485 -7593298 + (TG)n Simple_repeat Simple_repeat 1 44 0 2 1744 378 0 0 0 chr3 152006606 152006648 -7593135 + (CA)n Simple_repeat Simple_repeat 2 43 0 2 1744 812 70 17 0 chr3 152006749 152006864 -7592919 + (TTTC)n Simple_repeat Simple_repeat 2 118 0 2 1744 1160 51 0 0 chr3 152006864 152007001 -7592782 - B1_Mus1 SINE Alu -10 138 2 3 1744 1230 54 0 0 chr3 152007214 152007361 -7592422 - B1_Mus1 SINE Alu 0 148 2 3 1744 330 136 123 0 chr3 152007449 152007539 -7592244 + PB1D10 SINE Alu 10 120 0 3 1744 757 250 21 26 chr3 152007541 152007720 -7592063 + B3 SINE B2 19 199 -17 3 1744 231 36 0 0 chr3 152007720 152007748 -7592035 + (CAAT)n Simple_repeat Simple_repeat 2 29 0 3 1744 757 250 21 26 chr3 152007748 152007761 -7592022 + B3 SINE B2 200 210 -6 3 1744 244 326 68 60 chr3 152007787 152008035 -7591748 + Lx8 LINE L1 7036 7285 -188 3 1744 1176 68 0 0 chr3 152008123 152008270 -7591513 + B1_Mm SINE Alu 1 147 0 3 1744 487 190 40 0 chr3 152008542 152008642 -7591141 - PB1D10 SINE Alu -13 104 1 3 1744 672 203 209 28 chr3 152008698 152008880 -7590903 + B3 SINE B2 1 215 -1 3 1744 285 190 0 0 chr3 152009125 152009183 -7590600 - PB1D7 SINE Alu -20 100 43 3 1744 211 98 19 38 chr3 152009611 152009664 -7590119 + (CGGG)n Simple_repeat Simple_repeat 3 54 0 4 1744 25 0 0 0 chr3 152009680 152009705 -7590078 + GC_rich Low_complexity Low_complexity 1 25 0 4 1744 189 0 0 0 chr3 152010170 152010191 -7589592 + (TC)n Simple_repeat Simple_repeat 2 22 0 4 1744 282 202 134 31 chr3 152010206 152010238 -7589545 - PB1D10 SINE Alu -5 112 6 4 1744 310 191 0 31 chr3 152010238 152010303 -7589480 - ID_B1 SINE B4 -75 149 87 4 1744 234 0 0 0 chr3 152010491 152010517 -7589266 + (CAAG)n Simple_repeat Simple_repeat 2 27 0 4 1744 1224 41 0 0 chr3 152010840 152010987 -7588796 - B1_Mus2 SINE Alu 0 147 1 4 1744 708 162 29 22 chr3 152011282 152011421 -7588362 + B1_Mur4 SINE Alu 1 140 -10 4 1744 198 0 0 0 chr3 152011499 152011521 -7588262 + (T)n Simple_repeat Simple_repeat 1 22 0 4 1744 249 196 242 20 chr3 152011523 152011622 -7588161 - ID_B1 SINE B4 0 224 104 4 1744 266 159 143 0 chr3 152011955 152012018 -7587765 + B2_Mm2 SINE B2 1 72 -123 5 1744 184 293 0 17 chr3 152012079 152012138 -7587645 - L4 LINE RTE -1052 977 920 5 1744 227 86 0 103 chr3 152012485 152012563 -7587220 + GA-rich Low_complexity Low_complexity 4 73 0 5 1744 246 128 0 0 chr3 152012604 152012643 -7587140 + (T)n Simple_repeat Simple_repeat 1 39 0 5 1744 532 252 30 8 chr3 152012672 152012804 -7586979 - B1F SINE Alu -13 136 2 5 1744 279 71 0 0 chr3 152012932 152012974 -7586809 + (T)n Simple_repeat Simple_repeat 1 42 0 5 1744 348 248 57 9 chr3 152014145 152014251 -7585532 - PB1D7 SINE Alu -8 112 2 5 1744 236 291 0 48 chr3 152014388 152014471 -7585312 - ID4_ SINE ID 0 83 5 5 1744 3080 191 61 59 chr3 152014794 152014917 -7584866 - Lx9 LINE L1 -7 7637 7536 5 1744 857 108 54 0 chr3 152014917 152015046 -7584737 - B1_Mur3 SINE Alu -13 136 1 5 1744 3080 191 61 59 chr3 152015046 152015673 -7584110 - Lx9 LINE L1 -109 7535 6885 5 1744 620 140 26 0 chr3 152015695 152015809 -7583974 + B2_Mm2 SINE B2 79 195 0 6 1744 537 238 33 47 chr3 152015836 152015986 -7583797 + B1_Mur1 SINE Alu 2 149 0 6 1744 307 303 96 17 chr3 152016316 152016494 -7583289 + B3A SINE B2 5 196 -2 6 1744 1257 276 111 26 chr3 152016560 152017239 -7582544 + L1MA4 LINE L1 5189 5931 -369 6 1744 617 167 17 26 chr3 152017831 152017948 -7581835 + B1F2 SINE Alu 34 149 0 6 1744 627 258 140 0 chr3 152017954 152018140 -7581643 - B3 SINE B2 0 216 5 6 1744 560 258 0 6 chr3 152018164 152018332 -7581451 + CT-rich Low_complexity Low_complexity 1 167 0 6 1744 347 304 109 32 chr3 152018713 152018934 -7580849 - L1MEc LINE L1 -6121 279 42 6 1744 1089 284 90 81 chr3 152019199 152019656 -7580127 + Lx8 LINE L1 6376 6826 -647 6 1744 697 169 92 0 chr3 152019656 152019786 -7579997 - B1_Mur4 SINE Alu -8 142 1 6 1744 1089 284 90 81 chr3 152019786 152019937 -7579846 + Lx8 LINE L1 6827 6990 -483 6 1744 641 287 116 39 chr3 152019977 152020332 -7579451 + Lx8 LINE L1 7086 7467 -6 6 1744 864 190 7 0 chr3 152020338 152020480 -7579303 + B1_Mur2 SINE Alu 1 143 -6 7 1744 586 231 15 8 chr3 152020500 152020631 -7579152 + B1_Mur4 SINE Alu 10 141 -9 7 1744 202 222 19 0 chr3 152021146 152021200 -7578583 + (TG)n Simple_repeat Simple_repeat 2 56 0 7 1744 26 74 0 0 chr3 152021221 152021275 -7578508 + AT_rich Low_complexity Low_complexity 1 54 0 7 1744 212 303 88 29 chr3 152021818 152021920 -7577863 - PB1D10 SINE Alu -9 108 1 7 1744 448 201 95 20 chr3 152022171 152022318 -7577465 - RSINE1 SINE B4 -5 160 3 7 1744 260 307 82 52 chr3 152022532 152022666 -7577117 + MER105 DNA DNA 8 145 -59 7 1744 213 39 0 0 chr3 152022724 152022750 -7577033 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 7 1744 254 300 130 0 chr3 152022834 152022934 -7576849 - ID_B1 SINE B4 -14 210 98 7 1744 336 269 21 0 chr3 152023639 152023732 -7576051 - Lx8 LINE L1 -1190 6283 6189 7 1744 516 266 78 5 chr3 152024214 152024396 -7575387 + B3A SINE B2 1 190 -26 8 1744 244 303 114 27 chr3 152024451 152024600 -7575183 - B3A SINE B2 -35 163 2 8 1744 418 260 108 23 chr3 152024611 152024741 -7575042 - ID_B1 SINE B4 -3 221 81 8 1744 234 0 0 0 chr3 152025475 152025501 -7574282 + (T)n Simple_repeat Simple_repeat 1 26 0 8 1744 1171 49 14 0 chr3 152025503 152025646 -7574137 - B1_Mus2 SINE Alu -2 145 1 8 1744 224 260 0 20 chr3 152025709 152025760 -7574023 - ID4_ SINE ID -22 61 12 8 1744 736 193 0 36 chr3 152025800 152025941 -7573842 - B1_Mur3 SINE Alu -2 147 13 8 1744 1234 97 10 56 chr3 152025941 152026137 -7573646 + B2_Mm2 SINE B2 1 187 -8 8 1744 381 255 0 105 chr3 152026137 152026159 -7573624 - PB1D7 SINE Alu -98 22 1 8 1744 672 133 25 8 chr3 152026413 152026534 -7573249 + B1_Mur2 SINE Alu 10 132 -17 8 1744 526 261 0 0 chr3 152027069 152027180 -7572603 - B1_Mm SINE Alu -34 113 3 8 1744 369 299 67 0 chr3 152027316 152027450 -7572333 - ID_B1 SINE B4 -2 222 80 9 1744 232 342 138 10 chr3 152027879 152028074 -7571709 - L2 LINE L2 -507 2912 2693 9 1744 420 250 9 27 chr3 152028794 152028905 -7570878 - PB1D10 SINE Alu -2 115 7 9 1744 1185 48 14 0 chr3 152029836 152029981 -7569802 - B1_Mus2 SINE Alu 0 147 1 9 1744 902 222 29 15 chr3 152029999 152030205 -7569578 - B3 SINE B2 -7 209 1 9 1744 448 268 61 76 chr3 152030303 152030501 -7569282 - ID_B1 SINE B4 -7 217 23 9 1744 341 321 144 8 chr3 152030762 152030894 -7568889 - RSINE1 SINE B4 -13 152 3 9 1744 224 240 20 0 chr3 152031684 152031734 -7568049 + (CTTA)n Simple_repeat Simple_repeat 3 53 0 9 1744 589 137 88 0 chr3 152031735 152031837 -7567946 - B1_Mur1 SINE Alu -38 111 1 9 1744 295 221 70 96 chr3 152031737 152031852 -7567931 - MT2B LTR ERVL -338 263 152 9 1744 28 29 0 0 chr3 152031957 152031992 -7567791 + AT_rich Low_complexity Low_complexity 1 35 0 1 1744 543 262 54 27 chr3 152033581 152033730 -7566053 - B3 SINE B2 -8 208 56 1 1744 456 313 55 17 chr3 152033899 152034249 -7565534 - L1MB7 LINE L1 -1834 5951 5591 1 1744 222 37 0 0 chr3 152034277 152034304 -7565479 + (TCTG)n Simple_repeat Simple_repeat 4 30 0 1 1744 758 105 0 26 chr3 152034310 152034427 -7565356 - B3 SINE B2 -102 114 1 1 1744 320 208 57 0 chr3 152034434 152034532 -7565251 - L1MB7 LINE L1 -554 5625 5524 1 1744 490 240 53 46 chr3 152034579 152034710 -7565073 + B1_Mur1 SINE Alu 9 140 -9 1 1744 357 323 0 66 chr3 152034788 152034924 -7564859 + RSINE1 SINE B4 4 130 -35 1 1744 633 173 98 0 chr3 152035406 152035539 -7564244 - B1_Mm SINE Alu 0 147 2 1 1744 289 257 282 18 chr3 152035568 152035738 -7564045 - B3 SINE B2 0 216 2 1 1744 507 310 49 0 chr3 152035810 152035952 -7563831 - RSINE1 SINE B4 0 165 17 1 1744 476 302 121 0 chr3 152035973 152036122 -7563661 + B3A SINE B2 13 179 -19 1 1744 2396 154 102 10 chr3 152038231 152038730 -7561053 - RMER4B LTR ERVK -8 577 33 1 1744 1181 48 7 0 chr3 152038747 152038893 -7560890 - B1_Mus2 SINE Alu 0 147 1 1 1744 257 98 48 32 chr3 152038893 152038956 -7560827 - RMER4B LTR ERVK -519 66 3 1 1744 973 205 33 33 chr3 152039893 152040105 -7559678 - B3 SINE B2 -3 213 2 1 1744 321 26 0 0 chr3 152040224 152040262 -7559521 + (CA)n Simple_repeat Simple_repeat 2 39 0 1 1744 851 152 216 0 chr3 152040473 152040644 -7559139 - B3 SINE B2 -8 208 1 1 1744 674 201 20 27 chr3 152040749 152040897 -7558886 + B1_Mur2 SINE Alu 3 149 0 1 1744 236 292 0 77 chr3 152040984 152041062 -7558721 + PB1D10 SINE Alu 46 117 0 1 1744 980 123 0 46 chr3 152041217 152041370 -7558413 - B1_Mur4 SINE Alu 0 150 5 1 1744 564 289 40 11 chr3 152041381 152041556 -7558227 - ID_B1 SINE B4 -7 217 38 1 1744 287 222 0 0 chr3 152042148 152042202 -7557581 + PB1D9 SINE Alu 55 108 -12 1 1744 279 301 0 0 chr3 152042751 152042824 -7556959 + PB1D10 SINE Alu 3 75 -42 1 1744 413 167 0 67 chr3 152043241 152043331 -7556452 + PB1D10 SINE Alu 33 116 -1 1 1745 1315 165 14 0 chr3 152043837 152044049 -7555734 - B3 SINE B2 0 216 2 1 1745 222 118 0 0 chr3 152044066 152044100 -7555683 + (TATG)n Simple_repeat Simple_repeat 2 35 0 1 1745 591 222 17 0 chr3 152044132 152044249 -7555534 - RSINE1 SINE B4 -44 121 3 1 1745 423 256 0 11 chr3 152045636 152045723 -7554060 + PB1D7 SINE Alu 23 108 -12 1 1745 215 152 0 33 chr3 152045980 152046041 -7553742 + A-rich Low_complexity Low_complexity 1 59 0 1 1745 943 77 226 0 chr3 152046309 152046464 -7553319 - B2_Mm2 SINE B2 -4 191 2 1 1745 24 32 0 0 chr3 152046807 152046838 -7552945 + AT_rich Low_complexity Low_complexity 1 31 0 1 1745 301 301 0 0 chr3 152046842 152046935 -7552848 - RSINE1 SINE B4 -7 158 66 1 1745 300 290 82 137 chr3 152047673 152047965 -7551818 + MLT1B LTR MaLR 86 361 -29 1 1745 770 159 0 8 chr3 152048055 152048182 -7551601 - B1_Mus2 SINE Alu -8 139 14 1 1745 371 303 13 47 chr3 152048182 152048196 -7551587 - ID_B1 SINE B4 -2 178 79 1 1745 250 282 51 60 chr3 152048339 152048456 -7551327 - PB1D10 SINE Alu -1 116 1 1 1745 212 200 0 0 chr3 152048474 152048509 -7551274 + B1_Mur1 SINE Alu 83 117 -32 1 1745 342 183 17 0 chr3 152048509 152048569 -7551214 + B1_Mus1 SINE Alu 5 65 -83 1 1745 595 294 204 4 chr3 152049045 152049325 -7550458 - MTE-int LTR MaLR -437 1143 808 1 1745 1861 114 8 140 chr3 152049641 152050019 -7549764 - ORR1A4 LTR MaLR -1 328 1 1 1745 317 271 19 94 chr3 152050206 152050312 -7549471 + PB1D10 SINE Alu 15 112 -5 1 1745 3307 113 75 11 chr3 152050431 152050971 -7548812 + Lx2B LINE L1 6024 6881 -119 1 1745 1652 42 0 0 chr3 152051168 152051361 -7548422 + B2_Mm1a SINE B2 1 193 0 1 1745 740 241 107 0 chr3 152051368 152051555 -7548228 + ID_B1 SINE B4 1 207 -17 1 1745 1162 75 0 13 chr3 152051577 152051726 -7548057 + B1_Mus1 SINE Alu 2 148 0 1 1745 249 33 0 0 chr3 152051726 152051756 -7548027 + (A)n Simple_repeat Simple_repeat 1 30 0 1 1745 1094 44 81 0 chr3 152051967 152052103 -7547680 + B1_Mus2 SINE Alu 1 147 0 1 1745 189 211 103 17 chr3 152052866 152052924 -7546859 - L2a LINE L2 -62 3364 3302 1 1745 464 265 48 24 chr3 152052993 152053159 -7546624 + B3A SINE B2 7 176 -22 1 1745 303 183 14 40 chr3 152053182 152053256 -7546527 + PB1D9 SINE Alu 49 120 0 1 1745 35 19 0 19 chr3 152053319 152053336 -7546447 + AT_rich Low_complexity Low_complexity 1 17 0 1 1745 1198 47 0 20 chr3 152053336 152053487 -7546296 + B1_Mus1 SINE Alu 1 148 0 1 1745 35 19 0 19 chr3 152053487 152053522 -7546261 + AT_rich Low_complexity Low_complexity 1 35 0 1 1745 690 231 0 0 chr3 152053533 152053667 -7546116 + B1_Mur1 SINE Alu 6 139 -10 1 1745 769 156 43 16 chr3 152054228 152054413 -7545370 + B3 SINE B2 3 190 -5 1 1745 268 294 118 0 chr3 152054707 152054826 -7544957 - ID_B1 SINE B4 -4 220 88 1 1745 226 250 89 0 chr3 152057072 152057128 -7542655 - ID_B1 SINE B4 -1 223 163 1 1745 211 114 29 0 chr3 152057125 152057160 -7542623 + B1F2 SINE Alu 21 56 -93 1 1745 306 0 0 0 chr3 152057182 152057216 -7542567 + (CA)n Simple_repeat Simple_repeat 2 35 0 1 1745 1046 103 0 0 chr3 152057369 152057514 -7542269 + B1_Mus1 SINE Alu 2 146 -2 1 1745 417 123 0 0 chr3 152057644 152057709 -7542074 + (CGTG)n Simple_repeat Simple_repeat 1 65 0 1 1745 244 274 65 0 chr3 152058359 152058421 -7541362 - ID4_ SINE ID -7 76 11 1 1745 21 0 0 0 chr3 152058820 152058841 -7540942 + GC_rich Low_complexity Low_complexity 1 21 0 1 1745 24 77 0 0 chr3 152059041 152059093 -7540690 + GC_rich Low_complexity Low_complexity 1 52 0 1 1745 249 275 8 40 chr3 152059117 152059242 -7540541 + G-rich Low_complexity Low_complexity 3 123 0 1 1745 23 0 0 0 chr3 152059301 152059324 -7540459 + GC_rich Low_complexity Low_complexity 1 23 0 1 1745 29 0 0 0 chr3 152059740 152059769 -7540014 + GC_rich Low_complexity Low_complexity 1 29 0 1 1745 35 103 0 0 chr3 152059820 152059946 -7539837 + GC_rich Low_complexity Low_complexity 1 126 0 1 1745 369 277 69 58 chr3 152060600 152060788 -7538995 - B3A SINE B2 0 198 9 1 1745 409 202 161 63 chr3 152061277 152061451 -7538332 - B3A SINE B2 -7 191 1 1 1745 905 56 0 0 chr3 152061740 152061866 -7537917 - B1_Mus1 SINE Alu -21 127 2 1 1745 387 288 39 16 chr3 152062084 152062211 -7537572 - B1F2 SINE Alu -5 144 15 1 1745 420 232 45 53 chr3 152062333 152062465 -7537318 + B1F SINE Alu 1 131 -18 1 1745 446 205 126 0 chr3 152062600 152062727 -7537056 + B1_Mus2 SINE Alu 5 147 0 1 1745 1048 136 196 15 chr3 152063043 152063361 -7536422 + RMER10B LTR ERVL 1 376 -22 1 1745 233 302 0 0 chr3 152063624 152063687 -7536096 - ID SINE ID -137 87 25 1 1745 266 220 0 33 chr3 152063633 152063694 -7536089 - ID4_ SINE ID -6 77 19 1 1745 1156 238 86 37 chr3 152064463 152064868 -7534915 + RMER10A LTR ERVL 1 425 -17 1 1745 395 311 8 161 chr3 152064919 152065168 -7534615 - ID_B1 SINE B4 -13 211 1 1 1745 243 219 109 0 chr3 152065468 152065532 -7534251 - L1M5 LINE L1 -253 5920 5850 1 1745 873 62 23 0 chr3 152066007 152066135 -7533648 - B1_Mus2 SINE Alu 0 147 17 1 1745 956 80 73 0 chr3 152066350 152066487 -7533296 - B1_Mus1 SINE Alu -1 147 1 1 1745 21 0 0 0 chr3 152066489 152066510 -7533273 + AT_rich Low_complexity Low_complexity 1 21 0 1 1745 493 206 10 0 chr3 152066812 152066909 -7532874 - ID_B1 SINE B4 -22 202 105 1 1745 610 138 259 38 chr3 152067701 152067859 -7531924 - B2_Mm2 SINE B2 -2 193 1 1 1745 272 259 111 76 chr3 152068270 152068441 -7531342 + B3 SINE B2 1 177 -39 1 1745 663 216 162 31 chr3 152068464 152068655 -7531128 - B3 SINE B2 0 216 1 1 1745 198 0 0 0 chr3 152068665 152068687 -7531096 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 1 1745 214 366 32 0 chr3 152068831 152068924 -7530859 + MIRb SINE MIR 51 146 -122 1 1745 289 200 230 87 chr3 152069282 152069408 -7530375 + B1_Mur1 SINE Alu 6 149 0 1 1745 215 135 0 55 chr3 152069677 152069703 -7530080 + T-rich Low_complexity Low_complexity 30 55 0 1 1745 1215 61 0 0 chr3 152069703 152069851 -7529932 - B1_Mus1 SINE Alu 0 148 1 1 1745 215 135 0 55 chr3 152069851 152069879 -7529904 + T-rich Low_complexity Low_complexity 4 29 0 1 1745 308 272 208 50 chr3 152070078 152070237 -7529546 + B3A SINE B2 1 184 -14 1 1745 21 71 0 0 chr3 152070956 152070998 -7528785 + AT_rich Low_complexity Low_complexity 1 42 0 1 1745 2295 68 3 43 chr3 152071071 152071423 -7528360 + ORR1A1 LTR MaLR 1 338 -8 1 1745 8810 109 233 30 chr3 152071427 152073055 -7526728 + ORR1A1-int LTR MaLR 1 1960 -3 1 1745 2864 49 0 25 chr3 152073055 152073406 -7526377 + ORR1A1 LTR MaLR 2 346 0 1 1745 506 217 0 0 chr3 152073855 152073947 -7525836 - RSINE1 SINE B4 -68 97 6 1 1745 285 216 31 102 chr3 152073957 152074055 -7525728 - PB1D7 SINE Alu -7 113 23 1 1745 29 0 0 0 chr3 152074504 152074533 -7525250 + AT_rich Low_complexity Low_complexity 1 29 0 1 1745 302 263 52 21 chr3 152075230 152075327 -7524456 + PB1D10 SINE Alu 8 107 -10 1 1745 363 287 35 0 chr3 152076844 152076931 -7522852 - PB1D10 SINE Alu -17 100 11 1 1745 660 265 80 150 chr3 152077140 152077540 -7522243 + MTE2a LTR MaLR 4 375 -4 2 1745 306 107 0 0 chr3 152078686 152078742 -7521041 + (T)n Simple_repeat Simple_repeat 1 56 0 2 1745 1161 240 93 20 chr3 152078957 152079310 -7520473 - MTE2a LTR MaLR 0 379 1 2 1745 459 48 0 0 chr3 152079792 152079854 -7519929 + (TC)n Simple_repeat Simple_repeat 1 62 0 2 1745 21 36 0 0 chr3 152079977 152080005 -7519778 + AT_rich Low_complexity Low_complexity 1 28 0 2 1745 22 0 0 0 chr3 152080203 152080225 -7519558 + AT_rich Low_complexity Low_complexity 1 22 0 2 1745 345 232 158 16 chr3 152080758 152080885 -7518898 - ID_B1 SINE B4 0 224 80 2 1745 282 29 0 0 chr3 152081206 152081241 -7518542 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 2 1745 1023 89 7 0 chr3 152081242 152081377 -7518406 - B1_Mus1 SINE Alu -11 137 2 2 1745 216 196 88 18 chr3 152081465 152081522 -7518261 - B1F SINE Alu -1 148 88 2 1745 529 273 53 13 chr3 152081868 152082020 -7517763 - B4A SINE B4 -32 260 103 2 1745 584 208 132 103 chr3 152082048 152082512 -7517271 - RMER4B LTR ERVK -9 576 12 2 1745 506 256 45 0 chr3 152083818 152083951 -7515832 + B1_Mur2 SINE Alu 3 141 -8 2 1745 526 221 19 0 chr3 152084079 152084183 -7515600 + PB1D9 SINE Alu 1 106 -14 2 1745 856 171 13 20 chr3 152084711 152084860 -7514923 + B1F2 SINE Alu 2 149 0 2 1745 1158 155 92 0 chr3 152085015 152085221 -7514562 + URR1A DNA MER1_type 2 226 0 2 1745 307 244 13 21 chr3 152086209 152086296 -7513487 + B1F1 SINE Alu 60 141 -8 2 1745 578 158 157 8 chr3 152086498 152086619 -7513164 + B1_Mur2 SINE Alu 2 140 -9 2 1745 423 149 0 0 chr3 152088046 152088120 -7511663 + (TA)n Simple_repeat Simple_repeat 2 75 0 2 1745 379 125 14 14 chr3 152089382 152089455 -7510328 + GA-rich Low_complexity Low_complexity 1 73 0 2 1745 199 298 116 2 chr3 152089960 152090076 -7509707 + MIR SINE MIR 113 243 -25 2 1745 252 0 0 0 chr3 152092521 152092549 -7507234 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 2 1745 684 200 54 0 chr3 152092549 152092679 -7507104 - B1_Mus1 SINE Alu -11 137 1 2 1745 447 48 0 0 chr3 152095254 152095317 -7504466 - B1_Mur4 SINE Alu 0 150 88 2 1745 517 186 44 52 chr3 152095339 152095475 -7504308 - ID_B1 SINE B4 0 224 90 2 1745 780 202 23 75 chr3 152096002 152096216 -7503567 - B3 SINE B2 -12 204 2 2 1745 234 248 282 19 chr3 152098097 152098200 -7501583 - RSINE1 SINE B4 -33 132 3 2 1745 696 123 0 39 chr3 152098252 152098379 -7501404 - B1_Mus2 SINE Alu -8 139 18 2 1745 520 299 40 40 chr3 152098406 152098608 -7501175 - RMER30 DNA MER1_type 0 202 1 2 1745 2746 77 3 10 chr3 152098970 152099353 -7500430 - L1Md_F2 LINE L1 0 6582 6203 2 1745 320 286 13 0 chr3 152099361 152099438 -7500345 - ID4_ SINE ID -2 81 4 2 1745 399 250 94 0 chr3 152099814 152099942 -7499841 + B4A SINE B4 139 278 -14 2 1745 260 208 19 0 chr3 152100418 152100471 -7499312 + B1F SINE Alu 93 146 -3 2 1745 351 231 91 40 chr3 152100590 152100734 -7499049 + B3A SINE B2 18 164 -31 2 1745 195 69 0 0 chr3 152100735 152100764 -7499019 + (CAA)n Simple_repeat Simple_repeat 2 30 0 2 1745 425 261 156 7 chr3 152100767 152100921 -7498862 + B3 SINE B2 1 177 -39 2 1745 335 280 178 17 chr3 152101394 152101630 -7498153 + B4A SINE B4 1 274 -18 2 1745 567 251 140 12 chr3 152101682 152101881 -7497902 + L1M4 LINE L1 5600 5824 -359 2 1745 441 177 553 0 chr3 152101887 152102012 -7497771 + B3 SINE B2 3 196 -20 2 1745 226 77 37 37 chr3 152102804 152102858 -7496925 + T-rich Low_complexity Low_complexity 6 59 0 2 1745 1191 41 0 20 chr3 152102858 152103007 -7496776 - B1_Mus2 SINE Alu 0 147 2 2 1745 323 275 174 11 chr3 152103431 152103615 -7496168 - L1MC3 LINE L1 -25 7760 7547 2 1745 351 247 69 8 chr3 152104566 152104665 -7495118 - PB1D7 SINE Alu -21 127 28 2 1745 222 350 149 8 chr3 152104713 152104834 -7494949 - RSINE1 SINE B4 -2 163 26 2 1745 882 223 15 19 chr3 152105288 152105494 -7494289 - B3 SINE B2 -4 212 8 2 1745 768 149 0 0 chr3 152105527 152105668 -7494115 + (TG)n Simple_repeat Simple_repeat 1 141 0 2 1745 303 185 125 36 chr3 152106538 152106650 -7493133 + RMER10A LTR ERVL 321 442 0 2 1745 236 86 0 0 chr3 152106652 152106687 -7493096 - tRNA-Phe-TTY tRNA tRNA 0 76 42 2 1745 306 0 0 0 chr3 152107766 152107800 -7491983 + (TTTTA)n Simple_repeat Simple_repeat 3 36 0 2 1745 489 284 7 56 chr3 152107800 152107942 -7491841 - B1_Mur2 SINE Alu -13 136 2 2 1745 350 284 58 29 chr3 152110755 152110893 -7488890 + ID_B1 SINE B4 82 223 -1 2 1745 227 258 29 29 chr3 152111333 152111401 -7488382 + tRNA-Ala-GCA tRNA tRNA 2 69 -6 2 1745 257 261 29 0 chr3 152113837 152113906 -7485877 + (TATG)n Simple_repeat Simple_repeat 2 72 0 2 1745 195 42 0 0 chr3 152114725 152114749 -7485034 + (TC)n Simple_repeat Simple_repeat 1 24 0 2 1745 244 167 20 59 chr3 152115464 152115515 -7484268 - ID SINE ID -164 60 12 2 1745 871 116 50 31 chr3 152116030 152116190 -7483593 - Lx4A LINE L1 -805 6253 6091 2 1745 1214 179 77 67 chr3 152116173 152116485 -7483298 + Lx4A LINE L1 6744 7058 0 2 1745 504 117 0 0 chr3 152116494 152116571 -7483212 + (TA)n Simple_repeat Simple_repeat 1 77 0 2 1745 258 267 67 0 chr3 152116610 152116670 -7483113 + ID4 SINE ID 17 80 -3 2 1745 274 383 28 0 chr3 152116770 152116877 -7482906 - PB1D10 SINE Alu -2 115 6 2 1745 679 269 80 0 chr3 152118482 152118657 -7481126 + B4A SINE B4 2 190 -102 2 1745 313 196 0 0 chr3 152119092 152119148 -7480635 + PB1D9 SINE Alu 64 120 -7 2 1745 1234 54 0 0 chr3 152119937 152120084 -7479699 + B1_Mus1 SINE Alu 2 148 0 2 1745 492 193 498 4 chr3 152120098 152120347 -7479436 - ORR1D1 LTR MaLR -8 376 5 2 1745 23 92 0 0 chr3 152122888 152122953 -7476830 + AT_rich Low_complexity Low_complexity 1 65 0 2 1745 293 302 185 28 chr3 152123609 152123799 -7475984 - MIR SINE MIR -7 255 53 2 1745 360 0 0 0 chr3 152125030 152125070 -7474713 + (TG)n Simple_repeat Simple_repeat 2 41 0 2 1745 456 241 0 89 chr3 152127142 152127265 -7472518 + PB1D9 SINE Alu 9 120 0 2 1745 493 227 78 26 chr3 152127283 152127437 -7472346 + L1MC2 LINE L1 5436 5597 -747 2 1745 231 221 291 0 chr3 152127519 152127605 -7472178 + L1MC2 LINE L1 5802 5912 -421 2 1745 305 156 179 3 chr3 152127756 152127858 -7471925 + L1MC2 LINE L1 6200 6317 -27 2 1745 234 0 0 0 chr3 152128206 152128232 -7471551 + (T)n Simple_repeat Simple_repeat 1 26 0 2 1745 1259 34 0 0 chr3 152128232 152128378 -7471405 - B1_Mm SINE Alu 0 147 2 2 1745 305 271 220 26 chr3 152128895 152129167 -7470616 - L1MA4A LINE L1 -298 6002 5687 2 1745 326 280 200 0 chr3 152129372 152129497 -7470286 - ID_B1 SINE B4 -9 215 66 2 1745 493 252 138 0 chr3 152130586 152130709 -7469074 - B1_Mur2 SINE Alu -3 146 7 2 1745 591 60 0 0 chr3 152130730 152130814 -7468969 + (TG)n Simple_repeat Simple_repeat 2 85 0 2 1745 467 271 131 0 chr3 152131498 152131620 -7468163 - ID_B1 SINE B4 0 224 87 2 1745 728 247 30 35 chr3 152133383 152133584 -7466199 - B3 SINE B2 0 216 17 2 1745 1233 41 0 0 chr3 152133641 152133788 -7465995 - B1_Mus2 SINE Alu 0 147 1 2 1745 352 296 58 22 chr3 152133809 152133947 -7465836 - RSINE1 SINE B4 -19 146 4 2 1745 225 0 0 0 chr3 152134128 152134153 -7465630 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 2 1745 341 279 23 0 chr3 152135077 152135163 -7464620 - BC1_Mm scRNA scRNA -64 88 1 2 1745 301 309 9 43 chr3 152135172 152135287 -7464496 - PB1D10 SINE Alu -5 112 2 2 1745 721 179 59 15 chr3 152135391 152135527 -7464256 - B1_Mur1 SINE Alu 0 149 8 2 1745 327 203 0 0 chr3 152136195 152136269 -7463514 + (TG)n Simple_repeat Simple_repeat 1 74 0 2 1745 590 261 24 24 chr3 152136639 152136808 -7462975 - RCHARR1 DNA MER1_type -1 973 805 2 1745 252 316 69 50 chr3 152136816 152136976 -7462807 + MLT1G LTR MaLR 169 331 -260 2 1745 796 230 59 0 chr3 152138319 152138506 -7461277 - B3A SINE B2 0 198 1 2 1745 842 164 0 0 chr3 152138524 152138658 -7461125 - B1_Mus2 SINE Alu -11 136 3 2 1745 445 34 0 0 chr3 152139360 152139419 -7460364 + L1Md_F3 LINE L1 6514 6572 -12 2 1745 24 0 0 0 chr3 152139419 152139443 -7460340 + AT_rich Low_complexity Low_complexity 1 24 0 2 1745 831 238 9 23 chr3 152139914 152140133 -7459650 - B3 SINE B2 0 216 1 2 1745 6292 56 0 6 chr3 152142510 152143287 -7456496 + L1Md_F2 LINE L1 5811 6582 0 2 1745 801 283 10 99 chr3 152143413 152143707 -7456076 + B4A SINE B4 1 268 -24 2 1745 261 0 0 0 chr3 152143713 152143742 -7456041 + (CACG)n Simple_repeat Simple_repeat 1 29 0 2 1745 280 222 51 77 chr3 152143754 152143832 -7455951 - MTE2b LTR MaLR -151 228 153 2 1745 272 190 51 17 chr3 152143832 152143891 -7455892 + MTD LTR MaLR 1 61 -360 2 1745 412 191 31 82 chr3 152143891 152143988 -7455795 + MTD LTR MaLR 253 344 -75 2 1745 640 252 68 0 chr3 152144035 152144182 -7455601 - MTE2b LTR MaLR -222 157 1 2 1745 195 42 0 0 chr3 152145096 152145120 -7454663 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 2 1745 276 298 48 24 chr3 152145593 152145717 -7454066 + L1MA9 LINE L1 5867 5993 -319 2 1745 873 51 68 9 chr3 152145855 152146192 -7453591 + (TG)n Simple_repeat Simple_repeat 1 357 0 2 1745 1178 18 24 30 chr3 152146217 152146554 -7453229 + (TG)n Simple_repeat Simple_repeat 1 334 0 2 1745 516 225 90 0 chr3 152148553 152148664 -7451119 - ID_B1 SINE B4 -23 201 81 2 1745 573 222 93 50 chr3 152150679 152150806 -7448977 + B4 SINE B4 125 262 -30 3 1745 500 42 30 40 chr3 152150806 152150906 -7448877 + (CA)n Simple_repeat Simple_repeat 2 100 0 3 1745 573 222 93 50 chr3 152150906 152150939 -7448844 + B4 SINE B4 263 291 -1 3 1745 345 315 8 16 chr3 152152455 152152584 -7447199 + L1ME2z LINE L1 6303 6430 -14 3 1745 771 183 6 11 chr3 152152584 152152761 -7447022 + GA-rich Low_complexity Low_complexity 3 178 0 3 1745 764 96 0 9 chr3 152154010 152154126 -7445657 + (GGAA)n Simple_repeat Simple_repeat 3 117 0 3 1745 215 105 26 0 chr3 152154126 152154149 -7445634 + (GA)n Simple_repeat Simple_repeat 2 24 0 3 1745 1145 111 0 11 chr3 152154149 152154331 -7445452 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 3 1745 215 105 26 0 chr3 152154331 152154345 -7445438 + (GA)n Simple_repeat Simple_repeat 1 15 0 3 1745 440 48 0 16 chr3 152154602 152154666 -7445117 + (TG)n Simple_repeat Simple_repeat 1 63 0 3 1745 433 211 64 46 chr3 152154785 152154894 -7444889 + PB1D7 SINE Alu 2 112 -8 3 1745 1169 319 107 24 chr3 152154916 152155384 -7444399 - MLT2B3 LTR ERVL -46 508 2 3 1745 240 333 0 37 chr3 152155981 152156062 -7443721 - RSINE1 SINE B4 -82 83 6 3 1745 514 315 115 21 chr3 152156070 152156169 -7443614 + Charlie1a DNA MER1_type 225 336 -1119 3 1745 634 243 64 0 chr3 152156169 152156309 -7443474 - B1_Mur1 SINE Alu 0 149 1 3 1745 514 315 115 21 chr3 152156309 152156431 -7443352 + Charlie1a DNA MER1_type 337 470 -985 3 1745 968 66 15 0 chr3 152156431 152156567 -7443216 + (TTTC)n Simple_repeat Simple_repeat 4 141 0 3 1745 514 315 115 21 chr3 152156567 152156587 -7443196 + Charlie1a DNA MER1_type 471 490 -965 3 1745 374 281 0 12 chr3 152156596 152156679 -7443104 - 5S rRNA rRNA -39 82 1 3 1745 370 215 99 79 chr3 152156703 152156804 -7442979 + Charlie1a DNA MER1_type 512 614 -841 3 1745 417 305 86 79 chr3 152157291 152157574 -7442209 - ORR1E LTR MaLR 0 379 77 3 1745 314 301 136 29 chr3 152157591 152157731 -7442052 - MTEa LTR MaLR -224 155 1 3 1745 208 302 0 0 chr3 152157991 152158044 -7441739 + GA-rich Low_complexity Low_complexity 5 57 0 3 1745 1744 130 2 189 chr3 152159168 152159672 -7440111 + RMER17C LTR ERVK 1 410 0 3 1745 309 243 0 26 chr3 152159707 152159783 -7440000 - ID4_ SINE ID -8 75 2 3 1745 180 0 0 0 chr3 152160606 152160626 -7439157 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 3 1745 272 269 83 16 chr3 152161070 152161191 -7438592 + MIR3 SINE MIR 44 172 -36 3 1745 230 296 0 14 chr3 152161398 152161470 -7438313 - ID4_ SINE ID -12 71 1 3 1745 224 342 25 66 chr3 152161537 152161659 -7438124 + MIRc SINE MIR 90 206 -62 3 1745 180 0 0 0 chr3 152161757 152161777 -7438006 + (TG)n Simple_repeat Simple_repeat 2 21 0 3 1745 278 319 0 0 chr3 152161777 152161846 -7437937 - ID4 SINE ID -14 69 1 3 1745 466 212 35 26 chr3 152162600 152162716 -7437067 - PB1D10 SINE Alu 0 117 1 3 1745 1420 84 16 0 chr3 152162764 152162955 -7436828 - B2_Mm2 SINE B2 -1 194 1 3 1745 378 257 9 28 chr3 152163022 152163130 -7436653 + (CATA)n Simple_repeat Simple_repeat 1 106 0 3 1745 426 218 0 0 chr3 152163623 152163779 -7436004 + (TG)n Simple_repeat Simple_repeat 2 157 0 3 1745 289 254 0 0 chr3 152163826 152163889 -7435894 - ID2 SINE ID -19 64 2 3 1745 811 231 21 21 chr3 152163914 152164104 -7435679 - B3 SINE B2 -24 192 3 3 1745 433 263 28 76 chr3 152164115 152164259 -7435524 - B1F1 SINE Alu 0 149 13 3 1745 259 292 59 53 chr3 152165107 152165277 -7434506 + YREP_Mm Unknown Unknown 126 296 -1516 3 1745 643 333 27 0 chr3 152165166 152165349 -7434434 - ID_B1 SINE B4 -8 216 29 3 1745 224 246 33 66 chr3 152165314 152165375 -7434408 - ID4_ SINE ID -21 62 4 3 1745 271 182 34 125 chr3 152165445 152165533 -7434250 - U4 snRNA snRNA -65 80 1 3 1745 1301 92 54 0 chr3 152166581 152166766 -7433017 + B2_Mm2 SINE B2 1 195 0 3 1745 866 265 73 134 chr3 152167576 152167933 -7431850 + MTE2a LTR MaLR 9 343 -36 3 1745 190 55 0 53 chr3 152167935 152167973 -7431810 + (TTATA)n Simple_repeat Simple_repeat 5 40 0 3 1745 297 0 0 0 chr3 152168084 152168117 -7431666 + (TG)n Simple_repeat Simple_repeat 2 34 0 3 1745 272 303 86 57 chr3 152168193 152168438 -7431345 - L1MC LINE L1 -2076 5806 5555 3 1745 283 376 20 0 chr3 152169084 152169185 -7430598 + LTR16A1 LTR ERVL 244 346 -110 3 1745 216 0 0 0 chr3 152169534 152169558 -7430225 + (CAAAA)n Simple_repeat Simple_repeat 1 24 0 3 1745 220 282 14 40 chr3 152169881 152169955 -7429828 + BC1_Mm scRNA scRNA 18 89 -63 3 1745 480 59 0 0 chr3 152170000 152170068 -7429715 + (CCAA)n Simple_repeat Simple_repeat 4 71 0 3 1745 227 276 51 38 chr3 152170074 152170153 -7429630 + ID4_ SINE ID 2 81 -2 3 1745 417 226 0 70 chr3 152170165 152170279 -7429504 + BC1_Mm scRNA scRNA 2 107 -45 3 1745 480 134 0 0 chr3 152170328 152170425 -7429358 + (TC)n Simple_repeat Simple_repeat 2 98 0 3 1745 597 61 0 0 chr3 152170425 152170507 -7429276 + (CA)n Simple_repeat Simple_repeat 1 82 0 3 1745 488 289 148 29 chr3 152171312 152171643 -7428140 - MTEa LTR MaLR -6 373 1 3 1745 216 158 0 0 chr3 152172664 152172702 -7427081 + (TG)n Simple_repeat Simple_repeat 1 38 0 3 1745 834 226 70 0 chr3 152172703 152172889 -7426894 - B3 SINE B2 -14 202 4 3 1745 574 246 29 7 chr3 152172896 152173035 -7426748 - B1_Mur1 SINE Alu -7 142 1 3 1745 290 87 0 21 chr3 152173824 152173871 -7425912 + (TG)n Simple_repeat Simple_repeat 2 47 0 3 1745 308 221 37 28 chr3 152173874 152173981 -7425802 + (TATATG)n Simple_repeat Simple_repeat 2 109 0 3 1745 397 220 20 13 chr3 152173981 152174133 -7425650 + (TG)n Simple_repeat Simple_repeat 2 154 0 3 1745 507 193 8 40 chr3 152174202 152174458 -7425325 + (TG)n Simple_repeat Simple_repeat 1 247 0 3 218 472 310 28 0 chr3 152174525 152174670 -7425113 - B1F SINE Alu 0 149 1 3 1746 326 289 127 35 chr3 152175197 152175409 -7424374 - MLT2C2 LTR ERVL -64 333 91 3 1746 280 316 21 0 chr3 152175493 152175588 -7424195 + RMER15 LTR ERVL 426 522 -53 3 1746 564 106 0 0 chr3 152175907 152175992 -7423791 + (TCTA)n Simple_repeat Simple_repeat 3 87 0 3 1746 465 211 0 107 chr3 152176887 152177009 -7422774 - PB1D10 SINE Alu -7 110 2 3 1746 1943 87 15 12 chr3 152177599 152177899 -7421884 + MTB_Mm LTR MaLR 1 317 -104 3 1746 781 283 57 28 chr3 152177860 152178107 -7421676 - B4 SINE B4 -34 258 5 3 1746 1106 315 93 57 chr3 152181026 152182156 -7417627 - Lx7 LINE L1 -1787 5909 4707 3 1746 216 0 0 0 chr3 152182301 152182325 -7417458 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 3 1746 1178 37 0 0 chr3 152182325 152182460 -7417323 - B1_Mus1 SINE Alu -9 139 5 3 1746 243 0 0 0 chr3 152183427 152183454 -7416329 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 3 1746 620 174 124 0 chr3 152183454 152183575 -7416208 - B1_Mur1 SINE Alu -5 144 9 3 1746 186 311 200 27 chr3 152183854 152184224 -7415559 - L2 LINE L2 -568 2851 2418 3 1746 664 119 0 56 chr3 152184608 152184857 -7414926 + (TTAGGG)n Simple_repeat Simple_repeat 1 235 0 3 1746 208 363 43 29 chr3 152185126 152185265 -7414518 + MIR SINE MIR 101 241 -21 3 1746 1166 70 0 0 chr3 152185442 152185585 -7414198 + B1_Mus1 SINE Alu 1 143 -5 3 1746 184 269 62 37 chr3 152185621 152185702 -7414081 - L3 LINE CR1 -3479 1010 928 3 1746 306 323 123 0 chr3 152185742 152185872 -7413911 + Cheshire DNA MER1_type 135 280 -2140 3 1746 262 298 0 0 chr3 152185870 152185927 -7413856 + Cheshire DNA MER1_type 2358 2414 -6 3 1746 255 271 150 7 chr3 152186027 152186167 -7413616 + MIRc SINE MIR 17 177 -91 3 1746 393 311 77 63 chr3 152186330 152186615 -7413168 + L2a LINE L2 3132 3420 -6 3 1746 364 321 41 12 chr3 152186663 152186833 -7412950 - L1MEd LINE L1 -4879 1240 1066 3 1746 928 300 75 59 chr3 152186967 152187014 -7412769 - MTE2b LTR MaLR 0 379 326 3 1746 528 59 0 0 chr3 152187014 152187082 -7412701 + (GGAA)n Simple_repeat Simple_repeat 3 70 0 3 1746 928 300 75 59 chr3 152187082 152187392 -7412391 - MTE2b LTR MaLR -54 325 17 3 1746 680 294 171 33 chr3 152187788 152188238 -7411545 + Lx8 LINE L1 6945 7456 -17 3 1746 296 225 0 0 chr3 152188218 152188289 -7411494 + L1MA6 LINE L1 6224 6294 -6 3 1746 183 80 0 0 chr3 152188571 152188596 -7411187 + (CA)n Simple_repeat Simple_repeat 2 26 0 3 1746 398 219 83 50 chr3 152189040 152189160 -7410623 - MTEa LTR MaLR 0 379 256 3 1746 4028 48 0 0 chr3 152190223 152190698 -7409085 - L1_Mus1 LINE L1 0 6567 6093 3 1746 3822 53 2 0 chr3 152190699 152191168 -7408615 + L1_Mus1 LINE L1 5587 6056 -511 3 1746 772 231 103 96 chr3 152191214 152191526 -7408257 - MTE2a LTR MaLR -46 333 20 3 1746 213 315 73 0 chr3 152191925 152192010 -7407773 - PB1D10 SINE Alu -46 101 10 3 1746 489 80 0 0 chr3 152194450 152194525 -7405258 + (TCTG)n Simple_repeat Simple_repeat 2 76 0 3 1746 429 20 0 0 chr3 152194525 152194575 -7405208 + (CA)n Simple_repeat Simple_repeat 1 50 0 3 1746 375 23 0 0 chr3 152194575 152194618 -7405165 + (GA)n Simple_repeat Simple_repeat 2 45 0 3 1746 212 122 24 0 chr3 152195299 152195340 -7404443 + (CAAT)n Simple_repeat Simple_repeat 1 42 0 3 1746 320 174 67 22 chr3 152195408 152195543 -7404240 + (TCTA)n Simple_repeat Simple_repeat 2 142 0 3 1746 281 47 23 0 chr3 152195769 152195812 -7403971 + (CAGA)n Simple_repeat Simple_repeat 1 44 0 3 1746 1143 57 11 11 chr3 152196750 152196928 -7402855 + (TCTA)n Simple_repeat Simple_repeat 3 180 0 3 1746 1414 33 0 11 chr3 152196951 152197133 -7402650 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 3 1746 741 93 0 0 chr3 152197241 152197348 -7402435 + (TG)n Simple_repeat Simple_repeat 2 108 0 3 1746 576 344 58 46 chr3 152197362 152197621 -7402162 - B4 SINE B4 -16 276 15 3 1746 975 251 10 0 chr3 152198480 152198683 -7401100 + B3 SINE B2 12 216 0 3 1746 4543 10 0 0 chr3 152198748 152199241 -7400542 + MT2_Mm LTR ERVL 1 493 0 3 1746 48435 15 6 0 chr3 152199241 152204567 -7395216 + MERVL-int LTR ERVL 1 5360 -125 3 1746 370 191 46 35 chr3 152204567 152204654 -7395129 + ORR1A3-int LTR MaLR 553 640 -1323 4 1746 319 0 0 0 chr3 152204654 152204692 -7395091 + MERVL-int LTR ERVL 5448 5485 0 3 1746 4543 10 0 0 chr3 152204692 152205185 -7394598 + MT2_Mm LTR ERVL 1 493 0 3 1746 799 11 0 0 chr3 152205841 152205935 -7393848 + B1_Mus2 SINE Alu 41 134 -13 4 1746 248 273 39 0 chr3 152206275 152206352 -7393431 + ID4_ SINE ID 2 81 -2 4 1746 491 229 38 0 chr3 152206547 152206652 -7393131 + PB1D10 SINE Alu 9 117 0 4 1746 210 240 20 0 chr3 152206691 152206741 -7393042 + CT-rich Low_complexity Low_complexity 3 53 0 4 1746 228 235 225 42 chr3 152206741 152206812 -7392971 - RSINE1 SINE B4 -4 161 78 4 1746 392 306 127 71 chr3 152206778 152207031 -7392752 - B4 SINE B4 -20 272 6 4 1746 242 320 80 0 chr3 152207033 152207108 -7392675 - L2b LINE L2 -19 3356 3276 4 1746 1105 96 0 22 chr3 152207523 152207751 -7392032 + (CA)n Simple_repeat Simple_repeat 1 222 0 4 1746 246 128 0 0 chr3 152207881 152207920 -7391863 + (CAT)n Simple_repeat Simple_repeat 3 41 0 4 1746 276 213 0 0 chr3 152207989 152208050 -7391733 + C-rich Low_complexity Low_complexity 5 65 0 4 1746 1673 36 0 0 chr3 152208772 152208965 -7390818 - B2_Mm1a SINE B2 0 193 1 4 1746 4062 118 14 71 chr3 152209097 152209373 -7390410 - L1_Mm LINE L1 -2074 3809 3549 4 1746 1163 46 7 0 chr3 152209373 152209525 -7390258 - L1Md_A LINE L1 0 6582 6430 4 1746 4062 118 14 71 chr3 152209525 152209589 -7390194 - L1_Mm LINE L1 -2335 3548 3478 4 1746 183 42 0 0 chr3 152209589 152209613 -7390170 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 4 1746 4062 118 14 71 chr3 152209613 152209723 -7390060 - L1_Mm LINE L1 -2406 3477 3374 4 1746 1209 68 0 0 chr3 152209723 152209869 -7389914 + B1_Mus2 SINE Alu 2 147 0 4 1746 4062 118 14 71 chr3 152209869 152210148 -7389635 - L1_Mm LINE L1 -2510 3373 3121 4 1746 2827 60 27 3 chr3 152210148 152210517 -7389266 + L1_Mus3 LINE L1 6261 6638 0 4 1746 257 216 20 0 chr3 152211293 152211344 -7388439 + Charlie12 DNA MER1_type 14 65 -2808 4 1746 3278 53 2 2 chr3 152213222 152213622 -7386161 + MTB LTR MaLR 1 400 0 4 1746 890 153 152 6 chr3 152214755 152214932 -7384851 - B3 SINE B2 0 216 14 4 1746 408 88 0 0 chr3 152216135 152216192 -7383591 + (CTAA)n Simple_repeat Simple_repeat 2 58 0 4 1746 2437 92 3 6 chr3 152216656 152216983 -7382800 - ORR1A3 LTR MaLR 0 326 1 4 1746 657 297 77 18 chr3 152217288 152217562 -7382221 - B4A SINE B4 -2 290 1 4 1746 736 231 137 6 chr3 152217673 152217856 -7381927 - B3 SINE B2 -9 207 1 4 1746 277 237 169 29 chr3 152218379 152218527 -7381256 + B4 SINE B4 3 291 -1 4 1746 491 150 40 17 chr3 152218533 152218709 -7381074 + (CA)n Simple_repeat Simple_repeat 1 180 0 4 1746 501 261 121 14 chr3 152219009 152219033 -7380750 - RSINE1 SINE B4 0 165 142 4 1746 1134 116 0 0 chr3 152219033 152219284 -7380499 + (TG)n Simple_repeat Simple_repeat 1 251 0 4 1746 501 261 121 14 chr3 152219284 152219396 -7380387 - RSINE1 SINE B4 -24 141 13 4 1746 747 120 0 0 chr3 152219411 152219528 -7380255 + (TCCCC)n Simple_repeat Simple_repeat 1 117 0 4 1746 1163 190 24 0 chr3 152219986 152220197 -7379586 - B3 SINE B2 0 216 1 4 1746 490 299 8 8 chr3 152220810 152221066 -7378717 + (CGGGG)n Simple_repeat Simple_repeat 1 256 0 4 1746 295 377 82 35 chr3 152221144 152221403 -7378380 + MLT1B LTR MaLR 20 269 -198 4 1746 234 62 0 0 chr3 152221403 152221435 -7378348 + (GGGTG)n Simple_repeat Simple_repeat 5 36 0 4 1746 295 316 98 49 chr3 152221435 152221564 -7378219 + MLT1B LTR MaLR 256 390 0 4 1746 22 56 0 0 chr3 152222040 152222076 -7377707 + AT_rich Low_complexity Low_complexity 1 36 0 4 1746 346 293 91 26 chr3 152222077 152222231 -7377552 - RSINE1 SINE B4 0 165 2 4 1746 426 288 52 52 chr3 152222388 152222696 -7377087 + RLTR18B LTR ERVK 13 314 -302 4 1746 1011 276 18 43 chr3 152222741 152223070 -7376713 + RLTR18B LTR ERVK 192 512 0 4 1746 317 24 0 23 chr3 152223234 152223277 -7376506 + (CATA)n Simple_repeat Simple_repeat 1 42 0 4 1746 245 193 34 34 chr3 152224086 152224145 -7375638 - MLT1A0 LTR MaLR -286 79 21 4 1746 352 222 86 0 chr3 152224724 152224805 -7374978 - B3A SINE B2 -107 91 4 4 1746 222 226 0 0 chr3 152225690 152225743 -7374040 + (TTTA)n Simple_repeat Simple_repeat 1 53 0 4 1746 193 290 29 14 chr3 152225935 152226021 -7373762 - MIR SINE MIR -119 157 65 4 1746 1296 82 0 0 chr3 152226137 152226370 -7373413 + (CA)n Simple_repeat Simple_repeat 1 233 0 4 1746 306 0 0 0 chr3 152226567 152226601 -7373182 + (CCAA)n Simple_repeat Simple_repeat 2 35 0 4 1746 491 204 204 0 chr3 152227830 152227982 -7371801 - MLT1A0 LTR MaLR -45 320 138 4 1746 2327 248 92 77 chr3 152228427 152228679 -7371104 - RCHARR1 DNA MER1_type -5 969 755 4 1746 1101 89 0 20 chr3 152228679 152228828 -7370955 - B1_Mus1 SINE Alu -1 147 2 4 1746 2327 248 92 77 chr3 152228828 152229331 -7370452 - RCHARR1 DNA MER1_type -220 754 201 4 1746 4981 37 15 3 chr3 152229331 152229929 -7369854 + L1Md_F3 LINE L1 5980 6584 0 4 1746 2327 248 92 77 chr3 152229929 152230123 -7369660 - RCHARR1 DNA MER1_type -774 200 6 4 1746 447 277 58 14 chr3 152232600 152232739 -7367044 + RSINE1 SINE B4 3 147 -18 4 1746 387 0 0 0 chr3 152232751 152232794 -7366989 + (CA)n Simple_repeat Simple_repeat 1 43 0 4 1746 386 277 127 39 chr3 152232808 152233147 -7366636 - L1MEf LINE L1 -4498 1902 1564 4 1746 38048 25 2 7 chr3 152233189 152238389 -7361394 + L1Md_T LINE L1 422 5586 -297 4 1746 8530 32 6 0 chr3 152238389 152239379 -7360404 + L1Md_T LINE L1 5587 6582 0 4 1746 198 0 0 0 chr3 152239460 152239482 -7360301 + (T)n Simple_repeat Simple_repeat 1 22 0 4 1746 407 78 16 0 chr3 152239487 152239551 -7360232 + (TTTA)n Simple_repeat Simple_repeat 1 65 0 4 1746 414 0 0 0 chr3 152239778 152239824 -7359959 + (TC)n Simple_repeat Simple_repeat 1 46 0 4 1746 850 164 67 43 chr3 152243987 152244197 -7355586 + B3 SINE B2 1 215 -1 4 1746 3197 21 50 0 chr3 152245048 152245425 -7354358 + MTA_Mm LTR MaLR 1 396 0 4 1746 531 262 168 58 chr3 152245573 152245901 -7353882 + MTEa LTR MaLR 16 379 0 4 1746 450 0 0 0 chr3 152246219 152246269 -7353514 + (CA)n Simple_repeat Simple_repeat 2 51 0 4 1746 529 265 61 44 chr3 152246432 152246661 -7353122 + B4A SINE B4 2 234 -58 4 1746 213 337 23 11 chr3 152246881 152246968 -7352815 + (CATG)n Simple_repeat Simple_repeat 3 90 0 4 1746 564 77 0 0 chr3 152248321 152248399 -7351384 + (TG)n Simple_repeat Simple_repeat 1 78 0 4 1746 252 0 0 0 chr3 152248399 152248426 -7351357 + (GA)n Simple_repeat Simple_repeat 1 28 0 4 1746 1580 186 59 85 chr3 152248452 152248874 -7350909 + MTD LTR MaLR 1 411 -8 4 1746 472 151 86 0 chr3 152249027 152249120 -7350663 - B4A SINE B4 -190 102 2 4 1746 792 194 0 7 chr3 152250734 152251035 -7348748 + (TATATG)n Simple_repeat Simple_repeat 1 298 0 4 1746 795 248 7 143 chr3 152251048 152251135 -7348648 - B4A SINE B4 0 292 219 4 1746 1054 203 39 5 chr3 152251135 152251343 -7348440 - B3 SINE B2 -1 215 1 4 1746 795 248 7 143 chr3 152251343 152251542 -7348241 - B4A SINE B4 -74 218 45 4 1746 330 293 82 20 chr3 152252042 152252173 -7347610 - B3A SINE B2 -15 201 65 4 1746 340 244 108 32 chr3 152253738 152253831 -7345952 - PB1D10 SINE Alu -7 142 32 4 1746 300 213 0 0 chr3 152254253 152254314 -7345469 - ID4 SINE ID 0 83 23 4 1746 305 228 12 12 chr3 152254708 152254788 -7344995 - MIR SINE MIR -96 166 87 4 1746 366 200 179 0 chr3 152255600 152255695 -7344088 + PB1D10 SINE Alu 6 117 0 4 1746 863 181 0 7 chr3 152256801 152256951 -7342832 - B1_Mur1 SINE Alu 0 149 1 4 1746 2040 107 17 3 chr3 152256990 152257290 -7342493 - L1_Mus3 LINE L1 -6 6632 6329 4 1746 3537 33 5 23 chr3 152257290 152257727 -7342056 + L1_Mus2 LINE L1 5626 6054 -512 4 1746 378 0 0 0 chr3 152257907 152257949 -7341834 + (TG)n Simple_repeat Simple_repeat 1 42 0 4 1746 25 31 0 0 chr3 152258722 152258754 -7341029 + AT_rich Low_complexity Low_complexity 1 32 0 4 1746 1168 220 152 39 chr3 152258796 152259074 -7340709 + ORR1D1 LTR MaLR 1 324 -50 4 1746 1110 90 0 0 chr3 152259074 152259252 -7340531 + (TCTA)n Simple_repeat Simple_repeat 1 178 0 4 1746 1168 220 152 39 chr3 152259252 152259309 -7340474 + ORR1D1 LTR MaLR 325 374 0 4 1746 252 0 0 0 chr3 152259327 152259355 -7340428 + (CA)n Simple_repeat Simple_repeat 2 29 0 4 1746 188 370 16 48 chr3 152260950 152261075 -7338708 - L2a LINE L2 -5 3421 3301 4 1746 2278 186 20 2 chr3 152263302 152263706 -7336077 - Lx5 LINE L1 -98 6952 6542 4 1746 4611 141 19 3 chr3 152263713 152264469 -7335314 + L1_Mur2 LINE L1 4714 5481 -396 4 1746 341 224 53 0 chr3 152264476 152264552 -7335231 - B4A SINE B4 -206 86 7 4 1746 311 231 71 59 chr3 152265243 152265413 -7334370 + MER57F LTR ERV1 3 174 -262 4 1746 286 283 188 27 chr3 152265470 152265619 -7334164 + MER57F LTR ERV1 257 429 -7 4 1746 265 288 30 0 chr3 152266742 152266808 -7332975 - ID4 SINE ID -13 70 3 4 1746 922 242 28 24 chr3 152267029 152267283 -7332500 + ORR1D2 LTR MaLR 1 255 -115 4 1746 2284 76 3 0 chr3 152267291 152267608 -7332175 + ORR1A2 LTR MaLR 2 319 -8 4 1746 406 224 0 12 chr3 152267612 152267698 -7332085 + ORR1D2 LTR MaLR 284 368 -2 4 1746 260 191 22 22 chr3 152268346 152268437 -7331346 + GA-rich Low_complexity Low_complexity 4 94 0 4 1746 413 175 10 0 chr3 152268440 152268543 -7331240 + (TG)n Simple_repeat Simple_repeat 1 104 0 4 1746 396 262 247 7 chr3 152268543 152268689 -7331094 - B3A SINE B2 -16 182 2 4 1746 1212 215 34 73 chr3 152269685 152270066 -7329717 - MTEb LTR MaLR -13 366 1 4 1746 1092 89 7 7 chr3 152270354 152270501 -7329282 - B1_Mus1 SINE Alu -1 147 1 4 1746 1075 213 94 80 chr3 152270616 152270787 -7328996 - ORR1E LTR MaLR -2 357 176 4 1746 1211 89 6 0 chr3 152270787 152270966 -7328817 + (GGA)n Simple_repeat Simple_repeat 1 180 0 4 1746 1075 213 94 80 chr3 152270966 152271146 -7328637 - ORR1E LTR MaLR -184 175 1 4 1746 270 0 0 0 chr3 152271590 152271620 -7328163 + (TC)n Simple_repeat Simple_repeat 2 31 0 4 1746 384 77 0 0 chr3 152271620 152271671 -7328112 + (TG)n Simple_repeat Simple_repeat 1 52 0 4 1746 279 0 0 0 chr3 152271671 152271701 -7328082 + (GA)n Simple_repeat Simple_repeat 1 31 0 4 1746 824 284 0 14 chr3 152271773 152271980 -7327803 + ID_B1 SINE B4 10 213 -11 4 1746 200 35 35 0 chr3 152272002 152272031 -7327752 + (TAAA)n Simple_repeat Simple_repeat 4 33 0 4 1746 429 70 0 0 chr3 152272486 152272543 -7327240 + (TG)n Simple_repeat Simple_repeat 2 58 0 5 1746 377 286 18 9 chr3 152272546 152272659 -7327124 - RSINE1 SINE B4 -43 122 9 5 1746 2027 132 82 6 chr3 152272836 152273179 -7326604 - L1Md_F LINE L1 -5713 806 438 5 1746 2565 30 0 0 chr3 152273179 152273475 -7326308 + L1_Mus1 LINE L1 6272 6567 0 5 1746 410 218 0 0 chr3 152274435 152274513 -7325270 + ID4_ SINE ID 3 80 -3 5 1746 491 316 35 53 chr3 152275479 152275706 -7324077 - B4A SINE B4 0 292 70 5 1746 685 228 30 18 chr3 152275724 152275889 -7323894 + MTD LTR MaLR 18 184 -235 5 1746 3187 87 0 37 chr3 152275892 152276379 -7323404 - L1_Mur1 LINE L1 -2214 3672 3204 5 1746 406 129 194 0 chr3 152276390 152276483 -7323300 + Lx3B LINE L1 6861 6971 -2 5 1746 552 212 191 22 chr3 152276526 152276709 -7323074 + MTD LTR MaLR 206 419 0 5 1746 625 176 15 7 chr3 152277062 152277199 -7322584 + CT-rich Low_complexity Low_complexity 4 141 0 5 1746 363 44 0 0 chr3 152277657 152277702 -7322081 + (CA)n Simple_repeat Simple_repeat 2 46 0 5 1746 3375 46 2 0 chr3 152279067 152279462 -7320321 + MTA_Mm LTR MaLR 1 396 0 5 1746 1032 99 0 0 chr3 152280330 152280481 -7319302 + (CCCCCT)n Simple_repeat Simple_repeat 4 154 0 5 1746 992 157 174 25 chr3 152280757 152280953 -7318830 - URR1A DNA MER1_type 0 226 2 5 1746 576 246 178 54 chr3 152281107 152281365 -7318418 + B4A SINE B4 3 292 0 5 1746 971 130 7 0 chr3 152281674 152281820 -7317963 - B1_Mus1 SINE Alu 0 148 2 5 1746 357 186 0 0 chr3 152282217 152282287 -7317496 + (TA)n Simple_repeat Simple_repeat 2 71 0 5 1746 260 349 0 0 chr3 152284177 152284260 -7315523 + (TG)n Simple_repeat Simple_repeat 2 84 0 5 1746 512 266 78 106 chr3 152284277 152284559 -7315224 - B4A SINE B4 -17 275 2 5 1746 569 215 100 7 chr3 152284730 152284880 -7314903 + RSINE1 SINE B4 2 165 0 5 1746 225 257 40 13 chr3 152285314 152285389 -7314394 + L1M5 LINE L1 5447 5523 -656 5 1746 237 266 16 0 chr3 152286274 152286338 -7313445 + B3A SINE B2 59 123 -75 5 1746 410 315 68 17 chr3 152286715 152286951 -7312832 + L1MA8 LINE L1 6038 6285 -6 5 1746 589 224 0 8 chr3 152288146 152288263 -7311520 + PB1D10 SINE Alu 1 116 -1 5 1746 207 0 0 0 chr3 152289090 152289113 -7310670 + (TA)n Simple_repeat Simple_repeat 2 24 0 5 1746 378 0 0 0 chr3 152289113 152289154 -7310629 + (TG)n Simple_repeat Simple_repeat 1 42 0 5 1746 400 306 123 18 chr3 152289219 152289382 -7310401 - B3A SINE B2 -18 180 1 5 1746 242 256 0 124 chr3 152289673 152289762 -7310021 + PB1D10 SINE Alu 3 80 -37 5 1746 394 230 29 36 chr3 152290059 152290199 -7309584 + B1F1 SINE Alu 3 141 -8 5 1746 229 343 0 0 chr3 152290219 152290286 -7309497 + ID4 SINE ID 8 74 -9 5 1746 595 242 13 32 chr3 152290353 152290511 -7309272 + RSINE1 SINE B4 11 165 0 5 1746 642 191 5 8 chr3 152290511 152290896 -7308887 + (CA)n Simple_repeat Simple_repeat 1 383 0 5 1746 215 274 14 14 chr3 152291720 152291794 -7307989 + C-rich Low_complexity Low_complexity 2 75 0 5 1746 189 218 12 25 chr3 152291806 152291886 -7307897 + CT-rich Low_complexity Low_complexity 4 82 0 5 1746 336 230 17 28 chr3 152291922 152292101 -7307682 + CT-rich Low_complexity Low_complexity 1 177 0 5 1746 347 254 15 0 chr3 152292404 152292471 -7307312 + ID4 SINE ID 2 69 -14 5 1746 13624 99 24 11 chr3 152292579 152294916 -7304867 + Lx3C LINE L1 3910 6261 -715 5 1746 2487 124 12 41 chr3 152294900 152295312 -7304471 + Lx3C LINE L1 6531 6930 -43 5 1746 27 0 0 0 chr3 152295312 152295339 -7304444 + AT_rich Low_complexity Low_complexity 1 27 0 5 1746 1300 30 12 0 chr3 152295531 152295696 -7304087 + (TCTA)n Simple_repeat Simple_repeat 4 170 0 5 1746 1803 135 8 117 chr3 152296179 152296548 -7303235 + ORR1A4 LTR MaLR 1 329 0 5 1746 8950 149 69 124 chr3 152296548 152298626 -7301157 + ORR1A4-int LTR MaLR 1 1963 0 5 1746 1667 129 74 73 chr3 152298626 152298980 -7300803 + ORR1A4 LTR MaLR 1 386 -8 5 1746 334 364 41 51 chr3 152299242 152299636 -7300147 - L1MD LINE L1 -1847 4299 3910 5 1746 24 32 0 0 chr3 152299928 152299959 -7299824 + AT_rich Low_complexity Low_complexity 1 31 0 5 1746 418 262 23 47 chr3 152299991 152300119 -7299664 + B1_Mur1 SINE Alu 4 128 -21 5 1746 265 278 141 43 chr3 152300146 152300330 -7299453 - L1M5 LINE L1 -3719 2427 2226 5 1746 338 291 82 31 chr3 152300930 152301125 -7298658 + LTR33 LTR ERVL 1 205 -310 5 1746 483 252 14 49 chr3 152302080 152302222 -7297561 - ID_B1 SINE B4 0 224 88 5 1746 524 227 7 0 chr3 152302222 152302372 -7297411 + (CA)n Simple_repeat Simple_repeat 2 152 0 5 1746 363 169 0 0 chr3 152302393 152302464 -7297319 + (CA)n Simple_repeat Simple_repeat 1 71 0 5 1746 455 282 0 84 chr3 152303621 152303811 -7295972 + ID_B1 SINE B4 23 196 -28 5 1746 414 0 0 0 chr3 152304243 152304289 -7295494 + (TG)n Simple_repeat Simple_repeat 2 47 0 5 1746 779 286 24 35 chr3 152304802 152305083 -7294700 + B4A SINE B4 1 271 -21 5 1746 456 165 0 0 chr3 152305130 152305245 -7294538 + (TCTG)n Simple_repeat Simple_repeat 2 116 0 5 1746 216 67 0 0 chr3 152305257 152305287 -7294496 + (CA)n Simple_repeat Simple_repeat 1 30 0 5 1746 243 0 0 0 chr3 152305564 152305591 -7294192 + (TTG)n Simple_repeat Simple_repeat 2 28 0 5 218 315 267 138 0 chr3 152305591 152305709 -7294074 - B1F SINE Alu -10 139 6 5 1747 1860 191 33 11 chr3 152305911 152306277 -7293506 - ORR1D1 LTR MaLR 0 374 1 5 1747 24 0 0 0 chr3 152306289 152306313 -7293470 + AT_rich Low_complexity Low_complexity 1 24 0 5 1747 295 250 66 0 chr3 152306319 152306395 -7293388 - ID4_ SINE ID 0 83 3 5 1747 1234 260 69 11 chr3 152306413 152306615 -7293168 + MTD LTR MaLR 1 208 -211 5 1747 297 0 0 0 chr3 152306615 152306648 -7293135 + (CA)n Simple_repeat Simple_repeat 2 34 0 5 1747 522 0 0 0 chr3 152306648 152306705 -7293078 + (GA)n Simple_repeat Simple_repeat 2 59 0 5 1747 1234 260 69 11 chr3 152306705 152306878 -7292905 + MTD LTR MaLR 209 398 -21 5 1747 201 133 0 0 chr3 152306952 152306982 -7292801 + (TGGGGG)n Simple_repeat Simple_repeat 3 32 0 5 1747 213 211 27 40 chr3 152307953 152308027 -7291756 + (TTATA)n Simple_repeat Simple_repeat 2 74 0 5 1747 494 259 0 0 chr3 152308052 152308164 -7291619 + PB1D10 SINE Alu 1 112 -5 5 1747 396 0 0 0 chr3 152308487 152308531 -7291252 + (CA)n Simple_repeat Simple_repeat 2 45 0 5 1747 260 27 27 0 chr3 152309387 152309424 -7290359 + (TA)n Simple_repeat Simple_repeat 2 39 0 5 1747 437 236 188 169 chr3 152311357 152311729 -7288054 + MTE2a LTR MaLR 1 379 0 5 1747 270 297 107 17 chr3 152313683 152313861 -7285922 + MLT1J-int LTR MaLR 1064 1257 -130 5 1747 321 26 0 0 chr3 152314532 152314570 -7285213 + (TG)n Simple_repeat Simple_repeat 2 39 0 5 1747 228 322 99 62 chr3 152314661 152314853 -7284930 + MER21B LTR ERV1 40 238 -625 5 1747 363 306 117 33 chr3 152314913 152315153 -7284630 + MER21B LTR ERV1 390 649 -214 5 1747 249 140 0 0 chr3 152315855 152315912 -7283871 + (T)n Simple_repeat Simple_repeat 1 57 0 5 1747 354 23 0 0 chr3 152316167 152316210 -7283573 + (CA)n Simple_repeat Simple_repeat 2 44 0 5 1747 486 120 0 0 chr3 152316210 152316284 -7283499 + (TAGA)n Simple_repeat Simple_repeat 4 78 0 5 1747 1107 221 88 0 chr3 152316892 152317155 -7282628 + B4 SINE B4 3 288 -4 5 1747 202 156 22 22 chr3 152317177 152317223 -7282560 + (CA)n Simple_repeat Simple_repeat 1 46 0 5 1747 434 220 17 13 chr3 152317249 152317737 -7282046 + (CA)n Simple_repeat Simple_repeat 1 490 0 5 1747 352 205 19 13 chr3 152317750 152317908 -7281875 + (CA)n Simple_repeat Simple_repeat 2 160 0 5 1747 512 159 14 14 chr3 152317934 152318074 -7281709 + (CA)n Simple_repeat Simple_repeat 1 140 0 5 1747 298 287 23 15 chr3 152318086 152318217 -7281566 + (CA)n Simple_repeat Simple_repeat 2 133 0 5 1747 328 282 77 0 chr3 152319158 152319275 -7280508 - MER58A DNA MER1_type -72 152 27 5 1747 1751 175 44 52 chr3 152319597 152319982 -7279801 + ORR1C2 LTR MaLR 1 382 -2 5 1747 401 0 20 0 chr3 152320082 152320131 -7279652 + (TG)n Simple_repeat Simple_repeat 2 51 0 5 1747 277 278 0 14 chr3 152321093 152321166 -7278617 + ID SINE ID 2 73 -151 5 1747 194 0 39 0 chr3 152321170 152321196 -7278587 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 5 1747 26 74 0 0 chr3 152321224 152321278 -7278505 + AT_rich Low_complexity Low_complexity 1 54 0 5 1747 746 235 0 109 chr3 152321663 152321883 -7277900 - B3A SINE B2 0 198 3 5 1747 5360 100 20 19 chr3 152322079 152322872 -7276911 + Lx LINE L1 5861 6654 0 5 1747 1128 234 75 11 chr3 152323714 152324052 -7275731 - MTD LTR MaLR 0 419 20 5 1747 639 235 39 73 chr3 152324348 152324621 -7275162 - L1MA4 LINE L1 -284 6016 5751 5 1747 749 285 42 13 chr3 152324647 152324885 -7274898 + MTD LTR MaLR 18 262 -157 5 1747 383 255 84 14 chr3 152324896 152325039 -7274744 - L1MA4 LINE L1 -548 5743 5591 5 1747 541 333 22 0 chr3 152325051 152325234 -7274549 - ID_B1 SINE B4 -9 215 29 5 1747 840 282 109 42 chr3 152325437 152325862 -7273921 - L1MA4 LINE L1 -788 5355 4896 5 1747 180 0 0 0 chr3 152325862 152325882 -7273901 + (TCTG)n Simple_repeat Simple_repeat 4 23 0 5 1747 840 282 109 42 chr3 152325882 152326081 -7273702 - L1MA4 LINE L1 -1248 4895 4691 5 1747 234 0 0 0 chr3 152326212 152326238 -7273545 + (TTG)n Simple_repeat Simple_repeat 2 27 0 5 1747 826 196 0 7 chr3 152326238 152326376 -7273407 - B1_Mur1 SINE Alu -10 139 2 5 1747 417 254 94 99 chr3 152326376 152326422 -7273361 - B4 SINE B4 -76 216 33 5 1747 717 193 50 7 chr3 152326749 152326890 -7272893 + B3A SINE B2 2 148 -50 5 1747 486 0 0 0 chr3 152326890 152326944 -7272839 + (CA)n Simple_repeat Simple_repeat 1 54 0 5 1747 973 270 144 50 chr3 152327099 152327653 -7272130 + RLTR18 LTR ERVK 7 612 -4 5 1747 23 0 0 0 chr3 152329540 152329563 -7270220 + AT_rich Low_complexity Low_complexity 1 23 0 5 1747 28 29 0 0 chr3 152329834 152329869 -7269914 + AT_rich Low_complexity Low_complexity 1 35 0 5 1747 27 49 0 0 chr3 152331157 152331198 -7268585 + GC_rich Low_complexity Low_complexity 1 41 0 5 1747 646 78 31 8 chr3 152331292 152331421 -7268362 + (CA)n Simple_repeat Simple_repeat 2 133 0 5 1747 216 140 20 20 chr3 152331455 152331506 -7268277 + (CAGA)n Simple_repeat Simple_repeat 4 54 0 5 1747 1598 48 0 0 chr3 152332246 152332433 -7267350 - B2_Mm1t SINE B2 -5 188 2 5 1747 326 203 126 101 chr3 152333593 152333752 -7266031 + RSINE1 SINE B4 3 165 0 5 1747 231 88 0 0 chr3 152333760 152333794 -7265989 + (CAGA)n Simple_repeat Simple_repeat 1 34 0 5 1747 1426 148 5 5 chr3 152334300 152334524 -7265259 - URR1B DNA MER1_type 0 225 2 6 1747 324 0 0 0 chr3 152335222 152335258 -7264525 + (TG)n Simple_repeat Simple_repeat 2 37 0 6 1747 939 249 24 85 chr3 152335283 152335577 -7264206 - B4A SINE B4 -16 276 1 6 1747 336 318 100 5 chr3 152336724 152336979 -7262804 - L1MC LINE L1 -2122 5760 5497 6 1747 261 0 0 0 chr3 152337114 152337143 -7262640 + (TTG)n Simple_repeat Simple_repeat 2 30 0 6 1747 1111 66 0 0 chr3 152337143 152337279 -7262504 - B1_Mus1 SINE Alu -10 138 3 6 1747 404 245 93 12 chr3 152337959 152338120 -7261663 + L1M5 LINE L1 5157 5330 -816 6 1747 545 291 25 92 chr3 152338157 152338609 -7261174 + MTE2a LTR MaLR 1 404 -15 6 1747 296 322 33 46 chr3 152338617 152338770 -7261013 + L1M5 LINE L1 5417 5567 -606 6 1747 214 309 0 14 chr3 152339490 152339559 -7260224 - MIRm SINE MIR 0 276 209 6 1747 465 301 7 40 chr3 152340103 152340255 -7259528 - B3A SINE B2 -51 147 1 6 1747 370 295 27 67 chr3 152340287 152340436 -7259347 - MER3 DNA MER1_type -7 202 60 6 1747 815 185 7 0 chr3 152341048 152341194 -7258589 - B1_Mur1 SINE Alu -2 147 1 6 1747 187 314 14 0 chr3 152341421 152341491 -7258292 - L2b LINE L2 -1 3374 3304 6 1747 278 284 118 0 chr3 152341682 152341784 -7257999 + ID_B1 SINE B4 103 216 -8 6 1747 790 199 7 0 chr3 152341925 152342066 -7257717 - B1_Mur2 SINE Alu -6 143 2 6 1747 2277 203 53 17 chr3 152344296 152344897 -7254886 - RCHARR1 DNA MER1_type -40 934 312 6 1747 732 114 0 0 chr3 152344917 152345057 -7254726 + (TC)n Simple_repeat Simple_repeat 2 141 0 6 1747 477 50 0 0 chr3 152345057 152345117 -7254666 + (CA)n Simple_repeat Simple_repeat 1 60 0 6 1747 622 242 81 35 chr3 152345119 152345316 -7254467 - RCHARR1 DNA MER1_type -760 214 9 6 1747 413 194 32 11 chr3 152345599 152345693 -7254090 + Tigger7 DNA MER2_type 286 381 -2110 6 1747 1261 18 30 9 chr3 152345783 152346112 -7253671 + (TTC)n Simple_repeat Simple_repeat 1 336 0 6 1747 678 92 33 54 chr3 152346114 152346178 -7253605 + polypyrimidine Low_complexity Low_complexity 115 180 0 6 1747 1258 58 26 11 chr3 152346178 152346531 -7253252 + (TTC)n Simple_repeat Simple_repeat 1 358 0 6 1747 678 92 33 54 chr3 152346531 152346576 -7253207 + polypyrimidine Low_complexity Low_complexity 70 114 0 6 1747 1237 40 17 11 chr3 152346576 152346754 -7253029 + (TTC)n Simple_repeat Simple_repeat 2 180 0 6 1747 678 92 33 54 chr3 152346754 152346783 -7253000 + polypyrimidine Low_complexity Low_complexity 41 69 0 6 1747 1100 47 29 11 chr3 152346783 152346957 -7252826 + (TTC)n Simple_repeat Simple_repeat 1 177 0 6 1747 678 92 33 54 chr3 152346957 152346979 -7252804 + polypyrimidine Low_complexity Low_complexity 19 40 0 6 1747 1035 51 22 28 chr3 152346979 152347160 -7252623 + (TTC)n Simple_repeat Simple_repeat 1 180 0 6 1747 678 92 33 54 chr3 152347160 152347178 -7252605 + polypyrimidine Low_complexity Low_complexity 1 18 0 6 1747 215 74 0 0 chr3 152347180 152347207 -7252576 + (TCC)n Simple_repeat Simple_repeat 2 28 0 6 1747 9075 95 87 10 chr3 152347408 152349891 -7249892 - L1VL2 LINE L1 -2599 3278 399 6 1747 565 174 20 0 chr3 152350373 152350471 -7249312 + B1_Mur4 SINE Alu 2 101 -49 6 1747 307 359 41 14 chr3 152350626 152350846 -7248937 + L2 LINE L2 2284 2509 -910 6 1747 603 228 151 6 chr3 152351573 152351745 -7248038 - B3A SINE B2 -1 197 1 6 1747 547 211 6 87 chr3 152351813 152351974 -7247809 - Lx7 LINE L1 -4 7692 7545 6 1747 258 219 48 117 chr3 152352544 152352834 -7246949 + RMER17D2 LTR ERVK 221 490 -319 6 1747 280 254 47 6 chr3 152353953 152354065 -7245718 + MIR SINE MIR 97 223 -45 6 1747 3267 111 6 6 chr3 152354378 152355319 -7244464 + L1VL4 LINE L1 578 1532 -2285 6 1747 352 262 0 0 chr3 152356109 152356189 -7243594 - BC1_Mm scRNA scRNA -67 85 6 6 1747 302 393 0 0 chr3 152356281 152356390 -7243393 + Helitron3Na_Mam RC Helitron 89 197 -289 6 1747 964 124 6 17 chr3 152356390 152356562 -7243221 - URR1A DNA MER1_type 0 226 57 6 1747 612 319 54 0 chr3 152357193 152357434 -7242349 + MER2 DNA MER2_type 90 343 -2 6 1747 747 332 153 18 chr3 152357738 152358404 -7241379 - L2 LINE L2 -2293 1126 371 6 1747 1816 192 29 29 chr3 152358446 152358509 -7241274 - ORR1C1 LTR MaLR -2 376 315 6 1747 201 74 0 0 chr3 152358509 152358536 -7241247 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 6 1747 1816 192 29 29 chr3 152358536 152358848 -7240935 - ORR1C1 LTR MaLR -64 314 1 6 1747 1893 230 61 63 chr3 152359275 152359879 -7239904 + RMER19C LTR ERVK 3 605 -6 6 1747 600 232 97 0 chr3 152360606 152360761 -7239022 + ID_B1 SINE B4 47 216 -8 6 1747 492 268 78 72 chr3 152361591 152361784 -7237999 - B3A SINE B2 -3 195 2 6 1747 796 267 11 5 chr3 152362948 152363136 -7236647 + B4A SINE B4 94 282 -10 6 1747 377 95 16 0 chr3 152363141 152363204 -7236579 + (CA)n Simple_repeat Simple_repeat 2 65 0 6 1747 483 278 133 22 chr3 152363879 152364059 -7235724 - RMER30 DNA MER1_type -1 201 2 6 1747 378 120 0 0 chr3 152364544 152364619 -7235164 + (TTTC)n Simple_repeat Simple_repeat 2 76 0 6 1747 294 29 0 0 chr3 152364707 152364742 -7235041 + (TTTTA)n Simple_repeat Simple_repeat 2 36 0 6 1747 1131 36 14 0 chr3 152364744 152364882 -7234901 - B1_Mm SINE Alu -6 141 2 6 1747 375 285 43 25 chr3 152364948 152365110 -7234673 + MER34 LTR ERV1 27 191 -351 6 1747 599 277 13 26 chr3 152365137 152365289 -7234494 - RSINE1 SINE B4 -1 164 15 6 1747 381 240 120 0 chr3 152365330 152365455 -7234328 + MTEa LTR MaLR 3 142 -237 6 1747 1857 191 84 43 chr3 152365471 152365881 -7233902 + RLTR20C LTR ERVK 1 432 -102 6 1747 426 96 0 0 chr3 152365881 152365954 -7233829 + (TG)n Simple_repeat Simple_repeat 2 74 0 6 1747 1857 191 84 43 chr3 152365954 152366056 -7233727 + RLTR20C LTR ERVK 433 533 -1 6 1747 255 299 174 13 chr3 152366058 152366207 -7233576 + MTEa LTR MaLR 169 341 -38 6 1747 1047 142 45 15 chr3 152366270 152366470 -7233313 - ORR1A4 LTR MaLR 0 329 124 6 1747 451 169 11 63 chr3 152368075 152368170 -7231613 - ORR1E LTR MaLR -10 349 260 6 1747 1151 217 103 65 chr3 152368169 152368585 -7231198 - ORR1A4-int LTR MaLR -37 1543 967 6 1747 501 239 45 8 chr3 152368585 152368810 -7230973 - L1MC2 LINE L1 -236 6097 5861 6 1747 230 273 85 62 chr3 152368972 152369101 -7230682 + MTEb LTR MaLR 56 187 -172 6 1747 261 0 0 0 chr3 152369196 152369225 -7230558 + (CAAA)n Simple_repeat Simple_repeat 1 29 0 6 1747 256 167 29 29 chr3 152369250 152369318 -7230465 + MTEb LTR MaLR 312 379 0 6 1747 930 244 10 19 chr3 152369387 152369596 -7230187 - B3 SINE B2 -5 211 5 6 1747 1828 156 104 25 chr3 152369677 152369853 -7229930 + ORR1C2 LTR MaLR 1 193 -191 6 1747 414 0 0 0 chr3 152369853 152369899 -7229884 + (TC)n Simple_repeat Simple_repeat 2 47 0 6 1747 1828 156 104 25 chr3 152369899 152370078 -7229705 + ORR1C2 LTR MaLR 194 383 -1 6 1747 363 318 57 31 chr3 152370102 152370261 -7229522 + RSINE1 SINE B4 3 165 0 6 1747 246 326 35 21 chr3 152370481 152370622 -7229161 - L2c LINE L2 -49 3338 3196 6 1747 285 29 0 0 chr3 152371656 152371690 -7228093 + (TG)n Simple_repeat Simple_repeat 2 35 0 6 1747 425 311 52 7 chr3 152371694 152371830 -7227953 - RSINE1 SINE B4 -13 152 11 6 1747 465 286 213 16 chr3 152372015 152372339 -7227444 - MLT1D LTR MaLR -115 390 3 6 1747 803 211 226 23 chr3 152372416 152372717 -7227066 - ORR1D2 LTR MaLR -5 365 4 6 1747 901 222 97 0 chr3 152373741 152373957 -7225826 + B4 SINE B4 52 288 -4 6 1747 4952 43 8 8 chr3 152374155 152374760 -7225023 - L1_Mus1 LINE L1 0 6567 5963 6 1747 352 304 143 21 chr3 152375112 152375391 -7224392 - RMER20A LTR ERVK 0 516 204 6 1747 3659 109 48 2 chr3 152375407 152375947 -7223836 + Lx LINE L1 6088 6652 -2 6 1747 982 231 39 5 chr3 152375958 152376162 -7223621 + B3 SINE B2 1 211 -5 6 1747 552 200 0 94 chr3 152376232 152376359 -7223424 + PB1D9 SINE Alu 1 115 -5 6 1747 381 117 0 0 chr3 152376480 152376540 -7223243 + (TG)n Simple_repeat Simple_repeat 2 61 0 6 1747 223 68 91 0 chr3 152376921 152376965 -7222818 + A-rich Low_complexity Low_complexity 3 50 0 6 1747 194 300 41 110 chr3 152378126 152378272 -7221511 + L2c LINE L2 3242 3377 -10 6 1747 253 286 43 11 chr3 152378334 152378426 -7221357 - MIR3 SINE MIR -27 181 87 6 1747 264 122 0 0 chr3 152379006 152379047 -7220736 + (TG)n Simple_repeat Simple_repeat 1 41 0 6 1747 454 170 140 0 chr3 152379528 152379628 -7220155 - RSINE1 SINE B4 -36 129 16 6 1747 420 234 173 14 chr3 152379725 152379848 -7219935 + B3 SINE B2 1 145 -71 6 1747 207 0 0 0 chr3 152379848 152379871 -7219912 + (CATA)n Simple_repeat Simple_repeat 4 26 0 6 1747 420 278 109 29 chr3 152379871 152379916 -7219867 + B3 SINE B2 135 175 -20 6 1747 27 0 0 0 chr3 152380151 152380178 -7219605 + AT_rich Low_complexity Low_complexity 1 27 0 6 1747 432 184 5 53 chr3 152380264 152380453 -7219330 + CT-rich Low_complexity Low_complexity 1 180 0 6 1747 493 258 15 0 chr3 152380467 152380599 -7219184 - ID_B1 SINE B4 0 224 91 6 1747 28 29 0 0 chr3 152380617 152380652 -7219131 + AT_rich Low_complexity Low_complexity 1 35 0 6 1747 255 290 38 29 chr3 152381263 152381376 -7218407 - PB1D7 SINE Alu -9 111 1 6 1747 389 318 44 61 chr3 152381803 152382130 -7217653 - MLT1A LTR MaLR -28 380 26 6 1747 384 259 271 28 chr3 152382878 152383096 -7216687 + B4A SINE B4 7 277 -15 6 1747 1418 79 11 0 chr3 152383647 152383837 -7215946 - B2_Mm1t SINE B2 -1 192 1 6 1747 445 258 0 74 chr3 152384385 152384548 -7215235 - B3A SINE B2 0 198 48 6 1747 1228 48 0 7 chr3 152384638 152384786 -7214997 - B1_Mus1 SINE Alu 0 148 2 6 1747 1174 44 0 0 chr3 152384910 152385046 -7214737 + B1_Mus1 SINE Alu 1 136 -12 6 1747 248 0 0 30 chr3 152385047 152385080 -7214703 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 6 1747 234 0 0 0 chr3 152388362 152388388 -7211395 + (TG)n Simple_repeat Simple_repeat 1 26 0 6 1747 215 235 118 0 chr3 152389083 152389151 -7210632 - ID4 SINE ID -6 77 2 7 1747 488 323 152 19 chr3 152389225 152389541 -7210242 - Lx8 LINE L1 -90 7383 7026 7 1747 1132 208 146 23 chr3 152389701 152390050 -7209733 + MTD LTR MaLR 5 396 -23 7 1747 2172 150 0 6 chr3 152391658 152391994 -7207789 - L1_Mur2 LINE L1 -88 5789 5456 7 1747 7810 124 19 35 chr3 152391996 152393289 -7206494 + L1_Mur2 LINE L1 4167 5439 -438 7 1747 269 246 0 0 chr3 152393960 152394017 -7205766 + CT-rich Low_complexity Low_complexity 2 58 0 7 1747 285 89 0 0 chr3 152394038 152394083 -7205700 + (CA)n Simple_repeat Simple_repeat 1 45 0 7 1747 381 43 0 0 chr3 152394083 152394129 -7205654 + (TC)n Simple_repeat Simple_repeat 1 47 0 7 1747 441 110 0 0 chr3 152394753 152394826 -7204957 + (TCCC)n Simple_repeat Simple_repeat 4 76 0 7 1747 459 48 0 0 chr3 152395027 152395089 -7204694 + (CA)n Simple_repeat Simple_repeat 2 63 0 7 1747 288 90 196 27 chr3 152396530 152396678 -7203105 + (ACCTG)n Simple_repeat Simple_repeat 2 174 0 7 1747 235 306 35 23 chr3 152396761 152396848 -7202935 - PB1 SINE Alu -39 88 1 7 1747 261 302 0 0 chr3 152396787 152396850 -7202933 - B4A SINE B4 -146 146 84 7 1747 225 212 45 15 chr3 152399125 152399192 -7200591 - LTR41B LTR ERVL -72 686 618 7 1747 1173 49 7 0 chr3 152400654 152400797 -7198986 + B1_Mus2 SINE Alu 1 144 -3 7 1747 180 0 0 0 chr3 152400797 152400817 -7198966 + (CAA)n Simple_repeat Simple_repeat 2 21 0 7 1747 247 253 92 0 chr3 152401659 152401746 -7198037 - RMER30 DNA MER1_type -99 103 9 7 1747 23 0 0 0 chr3 152402324 152402347 -7197436 + AT_rich Low_complexity Low_complexity 1 23 0 7 1747 186 43 0 0 chr3 152402542 152402565 -7197218 + (TGG)n Simple_repeat Simple_repeat 2 24 0 7 1747 214 179 35 18 chr3 152402822 152402879 -7196904 - PB1D10 SINE Alu -20 97 40 7 1747 495 48 0 0 chr3 152403308 152403370 -7196413 + (TG)n Simple_repeat Simple_repeat 1 62 0 7 1747 356 325 109 13 chr3 152404249 152404405 -7195378 + MER91A DNA Tip100 1 171 -25 7 1747 232 233 68 0 chr3 152405601 152405674 -7194109 - ID SINE ID -146 78 1 7 1747 236 247 56 56 chr3 152405906 152405996 -7193787 - RSINE1 SINE B4 0 165 76 7 1747 339 323 0 10 chr3 152406107 152406207 -7193576 - PB1D10 SINE Alu -9 108 10 7 1747 703 279 166 5 chr3 152406206 152406474 -7193309 - MTE-int LTR MaLR -1221 359 20 7 1747 428 100 29 0 chr3 152407971 152408041 -7191742 + (CGTG)n Simple_repeat Simple_repeat 3 74 0 7 1747 351 284 16 72 chr3 152408043 152408168 -7191615 - RSINE1 SINE B4 -40 125 8 7 1747 545 240 168 0 chr3 152409628 152409753 -7190030 + B1_Mur3 SINE Alu 2 147 -2 7 1747 258 105 0 0 chr3 152411420 152411458 -7188325 + (TTTTC)n Simple_repeat Simple_repeat 1 38 0 7 1747 1361 96 96 0 chr3 152411560 152411768 -7188015 + Lx4A LINE L1 6828 7055 -3 7 1747 3933 62 6 2 chr3 152411778 152412276 -7187507 + L1_Mus1 LINE L1 6068 6567 0 7 1747 887 189 0 0 chr3 152413543 152413691 -7186092 + B1_Mus1 SINE Alu 1 148 0 7 1747 22 0 0 0 chr3 152413739 152413761 -7186022 + AT_rich Low_complexity Low_complexity 1 22 0 7 1747 305 286 118 21 chr3 152414293 152414531 -7185252 - L1M5 LINE L1 -713 5451 5191 7 1747 316 252 62 0 chr3 152414737 152414852 -7184931 - L1M5 LINE L1 -1505 4641 4518 7 1747 7014 108 44 92 chr3 152415311 152416481 -7183302 - RLTR13D3 LTR ERVK 0 1114 1 7 1747 570 261 16 54 chr3 152418831 152419017 -7180766 + B4A SINE B4 1 179 -113 7 1747 305 77 0 37 chr3 152419017 152419071 -7180712 + (CAAAAA)n Simple_repeat Simple_repeat 3 54 0 7 1747 286 224 24 0 chr3 152419177 152419262 -7180521 + (CATA)n Simple_repeat Simple_repeat 4 90 0 7 1747 414 259 10 1 chr3 152419541 152419667 -7180116 + ORR1D2 LTR MaLR 221 353 -21 7 1747 287 319 159 20 chr3 152420197 152420542 -7179241 - L1M2 LINE L1 -1099 5044 4652 7 1747 373 245 185 20 chr3 152422208 152422408 -7177375 - Lx9 LINE L1 -1651 5993 5761 7 1747 865 95 0 13 chr3 152422428 152422577 -7177206 + (TG)n Simple_repeat Simple_repeat 2 148 0 7 1747 556 296 12 12 chr3 152422580 152422744 -7177039 - B3A SINE B2 -33 165 2 7 1747 547 253 68 17 chr3 152422869 152423046 -7176737 - L1_Mm LINE L1 -357 5526 5341 7 1747 34 24 0 0 chr3 152423108 152423149 -7176634 + AT_rich Low_complexity Low_complexity 1 41 0 7 1747 251 279 0 68 chr3 152424244 152424317 -7175466 + L1MC4 LINE L1 643 710 -5505 7 1747 620 276 32 22 chr3 152424549 152424809 -7174974 + B4 SINE B4 43 292 0 7 1747 280 303 125 43 chr3 152424961 152425306 -7174477 + L1MC4 LINE L1 1006 1378 -4837 7 1747 344 274 26 0 chr3 152425738 152425851 -7173932 - ID_B1 SINE B4 -2 222 107 7 1747 36 40 0 0 chr3 152425855 152425905 -7173878 + AT_rich Low_complexity Low_complexity 1 50 0 7 1747 1432 302 168 27 chr3 152425943 152428058 -7171725 - Lx8 LINE L1 -18 7455 4962 7 1747 31 44 0 0 chr3 152430273 152430318 -7169465 + AT_rich Low_complexity Low_complexity 1 45 0 7 1747 333 219 27 0 chr3 152431219 152431292 -7168491 - B3A SINE B2 -15 183 109 7 1747 450 213 151 17 chr3 152431429 152431601 -7168182 + RMER5 LTR ERV1 11 205 -329 7 1747 474 18 0 0 chr3 152432138 152432193 -7167590 + (CA)n Simple_repeat Simple_repeat 2 56 0 7 1747 255 133 0 0 chr3 152432923 152432968 -7166815 + (TA)n Simple_repeat Simple_repeat 1 45 0 7 1747 324 267 34 25 chr3 152432972 152433091 -7166692 - MamGypLTR2b LTR Gypsy -50 872 753 7 1747 231 200 73 0 chr3 152433333 152433388 -7166395 + MTE2a LTR MaLR 34 92 -287 7 1747 248 240 77 39 chr3 152433476 152433580 -7166203 + MTE2a LTR MaLR 265 372 -7 7 1747 995 271 118 18 chr3 152434898 152435337 -7164446 + RMER5 LTR ERV1 11 493 -41 7 1747 401 239 61 9 chr3 152436439 152436553 -7163230 + RSINE1 SINE B4 3 122 -43 7 1747 222 233 0 0 chr3 152436553 152436613 -7163170 + (TG)n Simple_repeat Simple_repeat 1 60 0 7 1747 25 0 0 0 chr3 152436675 152436700 -7163083 + AT_rich Low_complexity Low_complexity 1 25 0 7 1748 294 50 0 0 chr3 152438051 152438091 -7161692 + (TTTTG)n Simple_repeat Simple_repeat 2 41 0 7 1748 28 0 0 0 chr3 152438721 152438749 -7161034 + AT_rich Low_complexity Low_complexity 1 28 0 7 1748 615 284 114 8 chr3 152439354 152439599 -7160184 - B4 SINE B4 -2 290 20 7 1748 732 191 64 100 chr3 152440686 152440936 -7158847 - Lx7 LINE L1 -1 7695 7455 7 1748 229 266 0 0 chr3 152440938 152441002 -7158781 - L1_Mur3 LINE L1 -7410 302 239 7 1748 1233 181 245 10 chr3 152441167 152441473 -7158310 + ORR1C1 LTR MaLR 1 378 0 7 1748 348 302 112 48 chr3 152441707 152442020 -7157763 - MLT1E LTR MaLR -65 588 256 7 1748 640 260 91 5 chr3 152442411 152442608 -7157175 + B3 SINE B2 1 214 -2 7 1748 6503 48 0 5 chr3 152444163 152444955 -7154828 - L1Md_F2 LINE L1 0 6582 5795 7 1748 518 294 124 0 chr3 152445981 152446175 -7153608 + Tigger7 DNA MER2_type 2268 2485 -6 7 1748 300 282 66 28 chr3 152448955 152449061 -7150722 + PB1 SINE Alu 1 110 -17 7 1748 242 231 14 84 chr3 152450780 152450851 -7148932 + RMER1B Other Other 7 72 -994 7 1748 3942 200 124 47 chr3 152450862 152451985 -7147798 + RMER1A Other Other 47 1030 0 7 1748 1021 181 92 5 chr3 152452018 152452224 -7147559 + URR1A DNA MER1_type 2 225 -1 7 1748 354 23 0 0 chr3 152454202 152454245 -7145538 + (TATG)n Simple_repeat Simple_repeat 2 44 0 7 1748 345 286 165 40 chr3 152454794 152454994 -7144789 - L1MA4A LINE L1 -385 5918 5694 7 1748 310 285 164 65 chr3 152455213 152455458 -7144325 + MLT1H1 LTR MaLR 20 333 -262 7 1748 426 20 0 0 chr3 152456025 152456076 -7143707 + (TG)n Simple_repeat Simple_repeat 2 52 0 7 1748 2625 199 40 16 chr3 152456489 152457141 -7142642 - Lx4B LINE L1 -8 6973 6256 7 1748 5072 147 60 9 chr3 152457140 152457482 -7142301 + Lx2B LINE L1 4943 5304 -582 7 1748 1449 84 368 0 chr3 152457482 152457721 -7142062 + ORR1A2 LTR MaLR 1 327 0 7 1748 5072 132 49 4 chr3 152457721 152458325 -7141458 + Lx2B LINE L1 5305 5932 -1068 7 1748 266 246 0 0 chr3 152458331 152458388 -7141395 + Lx2B LINE L1 6185 6241 -817 7 1748 522 0 0 0 chr3 152459162 152459220 -7140563 + (TA)n Simple_repeat Simple_repeat 2 59 0 7 1748 283 299 121 102 chr3 152459536 152460106 -7139677 + LTR41 LTR ERVL 91 671 -97 7 1748 387 92 0 0 chr3 152460293 152460358 -7139425 + (GGAA)n Simple_repeat Simple_repeat 1 65 0 7 1748 256 260 65 0 chr3 152461525 152461602 -7138181 - MER112 DNA MER1_type -10 251 170 7 1748 531 161 0 0 chr3 152462175 152462293 -7137490 + (TG)n Simple_repeat Simple_repeat 1 118 0 7 1748 384 22 0 0 chr3 152462298 152462343 -7137440 + (GA)n Simple_repeat Simple_repeat 1 45 0 7 1748 396 0 0 0 chr3 152462343 152462386 -7137397 + (TG)n Simple_repeat Simple_repeat 2 45 0 7 1748 613 267 0 0 chr3 152462386 152462506 -7137277 - B1F SINE Alu -10 139 20 7 1748 1864 141 6 42 chr3 152463411 152463744 -7136039 - ORR1A4 LTR MaLR -8 321 1 7 1748 239 243 42 28 chr3 152464110 152464182 -7135601 - RMER10B LTR ERVL 0 398 326 7 1748 2305 138 64 53 chr3 152464440 152464908 -7134875 - IAPLTR2_Mm LTR ERVK -2 473 1 7 1748 58029 18 7 6 chr3 152464908 152471378 -7128405 - IAPEz-int LTR ERVK 0 6481 3 7 1748 2305 138 64 53 chr3 152471378 152471846 -7127937 - IAPLTR2_Mm LTR ERVK -2 473 1 7 1748 198 0 0 0 chr3 152472812 152472834 -7126949 + (CAAAA)n Simple_repeat Simple_repeat 4 25 0 7 1748 807 153 7 46 chr3 152473040 152473191 -7126592 + URR1A DNA MER1_type 82 226 0 7 1748 1906 106 21 43 chr3 152473876 152474202 -7125581 + ORR1A4 LTR MaLR 3 321 -8 7 1748 1745 126 52 3 chr3 152474214 152474290 -7125493 + ORR1A4 LTR MaLR 22 96 -233 7 1748 198 0 0 0 chr3 152474290 152474312 -7125471 + (CCCCCA)n Simple_repeat Simple_repeat 1 22 0 7 1748 1745 126 52 3 chr3 152474312 152474521 -7125262 + ORR1A4 LTR MaLR 97 319 -10 7 1748 316 266 55 50 chr3 152474770 152474972 -7124811 + L1MC4 LINE L1 7108 7310 -732 7 1748 186 43 0 0 chr3 152475242 152475265 -7124518 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 7 1748 796 235 88 13 chr3 152475730 152476018 -7123765 - ORR1E LTR MaLR -85 299 1 7 1748 302 316 11 0 chr3 152476972 152477067 -7122716 - RMER15 LTR ERVL -40 535 440 8 1748 227 267 40 13 chr3 152477492 152477568 -7122215 + L1M4 LINE L1 5400 5477 -717 8 1748 245 301 86 43 chr3 152477617 152477756 -7122027 + L1M4 LINE L1 5560 5704 -470 8 1748 242 360 53 13 chr3 152477856 152478008 -7121775 - LTR77 LTR ERV1 -36 586 429 8 1748 298 298 102 24 chr3 152478714 152478841 -7120942 + MIR SINE MIR 84 220 -42 8 1748 216 299 4 43 chr3 152478853 152478947 -7120836 + MIRm SINE MIR 72 156 -52 8 1748 593 230 44 93 chr3 152480054 152480236 -7119547 - L2b LINE L2 -11 3376 3193 8 1748 333 0 0 0 chr3 152480243 152480280 -7119503 + (TTTTA)n Simple_repeat Simple_repeat 4 40 0 8 1748 667 165 29 6 chr3 152482060 152482278 -7117505 + (CA)n Simple_repeat Simple_repeat 1 223 0 8 1748 363 96 0 0 chr3 152482278 152482330 -7117453 + (TA)n Simple_repeat Simple_repeat 2 53 0 8 1748 665 139 3 70 chr3 152482330 152482556 -7117227 + (CA)n Simple_repeat Simple_repeat 1 210 0 8 1748 286 354 101 63 chr3 152484093 152484331 -7115452 - MARNA DNA Mariner -287 299 53 8 1748 217 356 108 24 chr3 152485149 152485316 -7114467 + L2 LINE L2 2897 3077 -342 8 1748 1613 210 58 19 chr3 152485360 152485507 -7114276 + ORR1D1 LTR MaLR 1 151 -223 8 1748 255 122 0 0 chr3 152485507 152485556 -7114227 + (TCTG)n Simple_repeat Simple_repeat 2 50 0 8 1748 1613 210 58 19 chr3 152485556 152485768 -7114015 + ORR1D1 LTR MaLR 152 374 0 8 1748 229 313 88 29 chr3 152485954 152486056 -7113727 - L4 LINE RTE -1407 622 515 8 1748 1987 156 93 16 chr3 152486400 152486766 -7113017 + ORR1B1 LTR MaLR 1 394 0 8 1748 187 351 118 73 chr3 152487154 152487332 -7112451 - L4 LINE RTE -1467 562 377 8 1748 593 254 0 0 chr3 152487350 152487460 -7112323 + PB1D7 SINE Alu 10 119 -1 8 1748 1883 150 81 15 chr3 152487966 152488298 -7111485 + ORR1B1 LTR MaLR 41 394 0 8 1748 3903 135 21 31 chr3 152488298 152488970 -7110813 + ORR1B1-int LTR MaLR 1 665 -1298 8 1748 204 213 6 72 chr3 152488975 152489142 -7110641 + (ATGGTG)n Simple_repeat Simple_repeat 4 159 0 8 1748 1314 138 63 64 chr3 152489156 152489414 -7110369 + MT2B LTR ERVL 29 287 -314 8 1748 4230 207 103 86 chr3 152489366 152489674 -7110109 + ORR1B1-int LTR MaLR 630 915 -594 8 1748 1320 92 0 0 chr3 152489674 152489848 -7109935 + B2_Mm2 SINE B2 3 176 -19 8 1748 4324 147 77 77 chr3 152489848 152490855 -7108928 + ORR1B1-int LTR MaLR 875 1963 0 8 1748 1726 141 83 35 chr3 152490862 152491200 -7108583 + ORR1B1 LTR MaLR 41 394 0 8 1748 182 319 14 14 chr3 152491646 152491716 -7108067 - MER5B DNA MER1_type -24 154 85 8 1748 226 345 99 25 chr3 152491762 152492125 -7107658 + L1MC4a LINE L1 6963 7352 -530 8 1748 415 292 161 31 chr3 152492664 152493104 -7106679 + L1MC4a LINE L1 7358 7975 -20 8 1748 999 139 0 0 chr3 152493225 152493405 -7106378 + (TG)n Simple_repeat Simple_repeat 1 180 0 8 1748 313 211 0 17 chr3 152493407 152493465 -7106318 - B4 SINE B4 -234 58 2 8 1748 251 286 0 0 chr3 152493632 152493695 -7106088 - MIR SINE MIR -38 224 162 8 1748 566 266 38 38 chr3 152495839 152496023 -7103760 - B3A SINE B2 -3 195 12 8 1748 264 329 114 62 chr3 152496228 152496455 -7103328 + MIRb SINE MIR 30 268 0 8 1748 1607 178 106 0 chr3 152497393 152497464 -7102319 - Lx5 LINE L1 0 7050 6966 8 1748 195 42 0 0 chr3 152497464 152497488 -7102295 + (CCCCCT)n Simple_repeat Simple_repeat 6 29 0 8 1748 1607 178 106 0 chr3 152497488 152497708 -7102075 - Lx5 LINE L1 -85 6965 6729 8 1748 3549 152 154 3 chr3 152497717 152498351 -7101432 + L1_Mur2 LINE L1 5145 5874 -3 8 1748 198 244 83 71 chr3 152499864 152499948 -7099835 - MIRb SINE MIR -66 202 118 8 1748 1243 277 13 87 chr3 152500051 152500442 -7099341 + MTEb LTR MaLR 4 365 -14 1 1748 587 301 18 24 chr3 152501078 152501245 -7098538 - MIR SINE MIR -8 254 89 2 1748 317 350 0 0 chr3 152501487 152501587 -7098196 + PB1D10 SINE Alu 1 100 -17 3 1748 507 276 212 20 chr3 152501768 152502060 -7097723 - MTEa LTR MaLR -29 350 3 4 1748 360 240 37 37 chr3 152502093 152502201 -7097582 + MLT1A1 LTR MaLR 296 403 -5 5 1748 194 242 15 0 chr3 152503309 152503375 -7096408 + (CA)n Simple_repeat Simple_repeat 2 68 0 6 1748 182 206 16 0 chr3 152503707 152503770 -7096013 + (TCTA)n Simple_repeat Simple_repeat 4 67 0 7 1748 282 160 0 0 chr3 152503755 152503805 -7095978 + (TATG)n Simple_repeat Simple_repeat 3 52 0 8 1748 288 130 0 0 chr3 152503961 152504007 -7095776 + (TCCA)n Simple_repeat Simple_repeat 4 49 0 9 1748 182 298 135 21 chr3 152504787 152504883 -7094900 + MIRc SINE MIR 63 169 -99 1 1748 757 266 19 19 chr3 152507668 152507859 -7091924 - B3 SINE B2 -3 213 20 1 1748 334 181 0 0 chr3 152508098 152508170 -7091613 + (TG)n Simple_repeat Simple_repeat 1 72 0 1 1748 551 159 17 22 chr3 152508170 152508350 -7091433 + (TCTG)n Simple_repeat Simple_repeat 2 180 0 1 1748 453 106 59 47 chr3 152508343 152508512 -7091271 + (TCTCTG)n Simple_repeat Simple_repeat 2 172 0 1 1748 307 165 41 0 chr3 152508529 152508626 -7091157 + (TCTCTG)n Simple_repeat Simple_repeat 6 106 0 1 1748 838 296 37 22 chr3 152508657 152508927 -7090856 - B4 SINE B4 -16 276 3 1 1748 689 284 30 0 chr3 152510603 152510772 -7089011 - ID_B1 SINE B4 -49 175 2 1 1748 181 246 123 0 chr3 152511032 152511097 -7088686 + MIRc SINE MIR 102 174 -94 1 1748 507 219 46 23 chr3 152511265 152511396 -7088387 + B1F2 SINE Alu 9 142 -7 1 1748 1198 249 111 30 chr3 152511523 152511884 -7087899 + MTD LTR MaLR 1 390 -29 1 1748 639 166 191 0 chr3 152511885 152512042 -7087741 - Lx9 LINE L1 -35 7609 7423 2 1748 351 0 0 0 chr3 152512043 152512082 -7087701 + (TC)n Simple_repeat Simple_repeat 2 40 0 2 1748 1434 98 33 0 chr3 152512083 152512298 -7087485 - Lx2 LINE L1 -1 6996 6775 2 1748 381 357 66 9 chr3 152512568 152512780 -7087003 - MIR SINE MIR -13 249 26 2 1748 302 181 148 153 chr3 152513224 152513407 -7086376 - ORR1E LTR MaLR -154 205 24 2 1748 1130 117 0 6 chr3 152513793 152513973 -7085810 + (TCC)n Simple_repeat Simple_repeat 2 180 0 2 1748 1011 174 0 0 chr3 152513977 152514406 -7085377 + CT-rich Low_complexity Low_complexity 1 429 0 2 1748 26 50 0 0 chr3 152515062 152515102 -7084681 + AT_rich Low_complexity Low_complexity 1 40 0 2 1748 281 118 20 0 chr3 152515247 152515298 -7084485 + (GGGGA)n Simple_repeat Simple_repeat 1 52 0 2 1748 1157 297 75 24 chr3 152515547 152515920 -7083863 - Lx8 LINE L1 -811 6662 6271 2 1748 699 267 77 0 chr3 152516915 152517110 -7082673 + ID_B1 SINE B4 2 211 -13 3 1748 432 0 0 0 chr3 152517624 152517672 -7082111 + (CA)n Simple_repeat Simple_repeat 2 49 0 3 1748 525 258 0 0 chr3 152517844 152518007 -7081776 + (CA)n Simple_repeat Simple_repeat 2 164 0 3 1748 317 175 17 17 chr3 152519976 152520034 -7079749 - L1MB7 LINE L1 -1 6183 6126 3 1748 529 154 110 0 chr3 152520045 152520136 -7079647 - ID_B1 SINE B4 -8 216 116 3 1748 302 253 0 44 chr3 152520202 152520293 -7079490 - L1MB7 LINE L1 -119 6065 5979 3 1748 651 310 93 3 chr3 152520427 152520718 -7079065 - L1MB7 LINE L1 -430 5748 5432 3 1748 457 248 68 47 chr3 152520870 152521018 -7078765 + MTEb LTR MaLR 8 158 -221 3 1748 250 347 20 31 chr3 152522239 152522256 -7077527 + B4A SINE B4 71 86 -206 3 1748 328 312 14 0 chr3 152522256 152522369 -7077414 + B1F1 SINE Alu 2 120 0 3 1748 276 270 9 43 chr3 152522369 152522485 -7077298 + GA-rich Low_complexity Low_complexity 1 112 0 3 1748 283 286 16 0 chr3 152524695 152524758 -7075025 - B4 SINE B4 -14 278 215 3 1748 360 222 26 19 chr3 152524761 152524917 -7074866 + CT-rich Low_complexity Low_complexity 1 157 0 4 1748 270 252 17 9 chr3 152524963 152525079 -7074704 + CT-rich Low_complexity Low_complexity 3 119 0 4 1748 2065 134 2 95 chr3 152525141 152525329 -7074454 + RMER17C LTR ERVK 1 178 -232 4 1748 876 108 0 0 chr3 152525329 152525459 -7074324 + (TCC)n Simple_repeat Simple_repeat 2 131 0 4 1748 2065 134 2 95 chr3 152525459 152525722 -7074061 + RMER17C LTR ERVK 179 409 -1 4 1748 257 264 31 103 chr3 152525864 152525961 -7073822 - L2c LINE L2 -5 3382 3293 4 1748 893 230 40 25 chr3 152527899 152528100 -7071683 - B4 SINE B4 -2 290 87 4 1748 209 250 0 0 chr3 152529340 152529392 -7070391 + G-rich Low_complexity Low_complexity 1 52 0 4 1748 313 303 31 50 chr3 152529672 152529832 -7069951 + MLT1G3 LTR MaLR 208 364 -231 4 1748 216 0 0 0 chr3 152530039 152530063 -7069720 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 4 1748 382 290 20 20 chr3 152530528 152530630 -7069153 - PB1 SINE Alu -23 104 3 4 1748 227 278 0 164 chr3 152530538 152530654 -7069129 - MT2B LTR ERVL -360 241 145 4 1748 182 296 176 81 chr3 152533693 152533954 -7065829 + L2c LINE L2 2923 3208 -179 5 1748 328 247 37 0 chr3 152534033 152534114 -7065669 + MLT2B1 LTR ERVL 63 146 -408 5 1748 377 291 94 8 chr3 152534176 152534304 -7065479 + MLT2B1 LTR ERVL 338 476 -91 5 1748 347 192 12 60 chr3 152535925 152536008 -7063775 + PB1D10 SINE Alu 38 116 -1 5 1748 30 59 0 0 chr3 152536054 152536105 -7063678 + AT_rich Low_complexity Low_complexity 1 51 0 5 1748 1768 171 98 56 chr3 152536745 152537123 -7062660 + ORR1B1 LTR MaLR 1 394 0 5 1748 222 257 112 56 chr3 152537773 152537880 -7061903 + MIR SINE MIR 40 152 -110 5 1748 425 235 82 82 chr3 152537921 152538213 -7061570 + B4A SINE B4 1 292 0 5 1748 291 274 17 0 chr3 152538215 152538390 -7061393 + (CA)n Simple_repeat Simple_repeat 1 178 0 5 1748 700 240 90 20 chr3 152538571 152538771 -7061012 - MER2 DNA MER2_type -6 339 126 5 1748 643 297 6 24 chr3 152538765 152538934 -7060849 + B3A SINE B2 20 185 -13 5 1748 225 0 0 0 chr3 152538962 152538987 -7060796 + (TG)n Simple_repeat Simple_repeat 1 25 0 6 1748 226 290 20 70 chr3 152539499 152539599 -7060184 + Charlie13a DNA Charlie 713 807 -707 6 1748 294 275 62 0 chr3 152541324 152541404 -7058379 + MLT1H2 LTR MaLR 40 124 -365 6 1748 921 348 34 32 chr3 152541767 152542353 -7057430 + L1MB4 LINE L1 5577 6163 -17 6 1748 947 321 25 14 chr3 152542419 152542703 -7057080 - B4 SINE B4 -5 287 1 6 1748 802 170 6 6 chr3 152542743 152542915 -7056868 + (TG)n Simple_repeat Simple_repeat 2 173 0 6 1748 207 0 0 0 chr3 152542916 152542939 -7056844 + (TCTG)n Simple_repeat Simple_repeat 2 24 0 6 1748 190 233 80 0 chr3 152545340 152545391 -7054392 + MIRc SINE MIR 46 103 -165 6 1748 248 253 49 85 chr3 152545516 152545598 -7054185 - L2b LINE L2 -33 3342 3264 6 1748 220 250 31 15 chr3 152545736 152545801 -7053982 + GA-rich Low_complexity Low_complexity 5 70 0 6 1748 231 266 100 0 chr3 152547773 152547895 -7051888 - L2b LINE L2 -175 3212 3067 6 1748 210 289 87 22 chr3 152548760 152548852 -7050931 - L2b LINE L2 -970 2449 2352 6 1748 328 260 143 139 chr3 152549241 152549536 -7050247 + B4 SINE B4 2 274 -18 7 1748 366 23 0 0 chr3 152549541 152549584 -7050199 + (CA)n Simple_repeat Simple_repeat 2 44 0 7 1748 3476 224 79 16 chr3 152550076 152550950 -7048833 - RCHARR1 DNA MER1_type -43 931 3 7 1748 379 333 19 63 chr3 152550972 152551177 -7048606 + LTR33 LTR ERVL 306 501 -14 7 1748 1425 82 56 2 chr3 152551780 152551986 -7047797 + Lx LINE L1 5773 5987 -1013 7 1748 2036 163 11 27 chr3 152551986 152552359 -7047424 + Lx2 LINE L1 6631 6997 0 7 1748 1320 179 50 39 chr3 152552359 152552431 -7047352 + Lx LINE L1 5988 6054 -946 7 1748 734 60 10 0 chr3 152552545 152552645 -7047138 + (GGA)n Simple_repeat Simple_repeat 3 103 0 7 1748 666 289 36 31 chr3 152553177 152553373 -7046410 + B3A SINE B2 1 197 -1 7 1748 1747 144 33 196 chr3 152553493 152553952 -7045831 + ORR1C2 LTR MaLR 1 384 0 7 1748 225 293 173 0 chr3 152554082 152554157 -7045626 + MTE2a LTR MaLR 1 88 -291 7 1748 2285 55 7 3 chr3 152554198 152554488 -7045295 - L1_Mus3 LINE L1 0 6638 6348 8 1748 1372 239 63 3 chr3 152554489 152554774 -7045009 + MTE2a LTR MaLR 77 378 -1 7 1748 482 312 21 83 chr3 152555070 152555262 -7044521 + B4A SINE B4 15 194 -98 8 1748 303 28 0 0 chr3 152555283 152555319 -7044464 + (CA)n Simple_repeat Simple_repeat 2 37 0 8 1748 456 27 13 40 chr3 152555332 152555408 -7044375 + (TCTA)n Simple_repeat Simple_repeat 4 77 0 8 1748 234 0 0 0 chr3 152555906 152555932 -7043851 + (A)n Simple_repeat Simple_repeat 1 26 0 8 1748 837 322 145 20 chr3 152556188 152556431 -7043352 - L1MB8 LINE L1 -1 6177 5918 8 1748 574 244 156 11 chr3 152556431 152556617 -7043166 - B3 SINE B2 -1 215 3 8 1748 826 311 135 29 chr3 152556617 152557540 -7042243 - L1MB8 LINE L1 -261 5917 4877 8 1748 23 68 0 0 chr3 152557946 152557990 -7041793 + AT_rich Low_complexity Low_complexity 1 44 0 8 1748 223 174 0 61 chr3 152558718 152558767 -7041016 + (CA)n Simple_repeat Simple_repeat 1 46 0 8 1748 22 35 0 0 chr3 152558866 152558895 -7040888 + AT_rich Low_complexity Low_complexity 1 29 0 8 1748 595 237 31 43 chr3 152559152 152559315 -7040468 - RSINE1 SINE B4 -2 163 3 9 1748 257 190 17 0 chr3 152559571 152559629 -7040154 + L1M2 LINE L1 4378 4436 -1707 9 1748 918 169 14 0 chr3 152559687 152559835 -7039948 + B1_Mur4 SINE Alu 1 150 0 9 1748 202 87 0 42 chr3 152559841 152559889 -7039894 + (CAAAA)n Simple_repeat Simple_repeat 4 49 0 9 1748 1512 144 126 67 chr3 152560089 152560431 -7039352 - ORR1B2 LTR MaLR -1 366 5 9 1748 283 221 25 49 chr3 152560663 152560744 -7039039 + MLT2B4 LTR ERVL 5 83 -473 9 1748 25 0 0 0 chr3 152561778 152561803 -7037980 + AT_rich Low_complexity Low_complexity 1 25 0 9 1748 1412 142 18 0 chr3 152562175 152562393 -7037390 + URR1A DNA MER1_type 5 226 0 9 1748 32 0 0 0 chr3 152562707 152562739 -7037044 + AT_rich Low_complexity Low_complexity 1 32 0 9 1748 4248 78 84 7 chr3 152562800 152563434 -7036349 - L1_Mus2 LINE L1 0 6566 5926 9 1748 1006 264 48 22 chr3 152564513 152564784 -7034999 - B4A SINE B4 -6 286 9 1 1748 875 214 74 10 chr3 152565580 152565783 -7034000 - B3 SINE B2 0 216 1 1 1748 282 239 0 0 chr3 152566710 152566781 -7033002 + (TGGA)n Simple_repeat Simple_repeat 4 74 0 1 1748 375 234 157 62 chr3 152566833 152567043 -7032740 + MLT1C LTR MaLR 6 235 -232 1 1749 649 321 44 14 chr3 152567917 152568192 -7031591 + B4A SINE B4 10 292 0 1 1749 494 306 158 31 chr3 152569723 152570440 -7029343 + L1MD LINE L1 4980 5785 -574 1 1749 323 272 272 74 chr3 152570919 152571135 -7028648 - MTD LTR MaLR -39 380 123 1 1749 36 0 0 0 chr3 152571213 152571249 -7028534 + AT_rich Low_complexity Low_complexity 1 36 0 1 1749 264 261 14 0 chr3 152571346 152571415 -7028368 + (CCA)n Simple_repeat Simple_repeat 1 70 0 1 1749 272 205 0 35 chr3 152571426 152571512 -7028271 + (CACCAT)n Simple_repeat Simple_repeat 2 84 0 1 1749 417 308 34 23 chr3 152571877 152572053 -7027730 - MLT1A LTR MaLR -4 370 193 1 1749 890 133 7 0 chr3 152572079 152572229 -7027554 + (GGGA)n Simple_repeat Simple_repeat 3 153 0 1 1749 225 0 0 0 chr3 152572332 152572357 -7027426 + (CA)n Simple_repeat Simple_repeat 1 25 0 1 1749 237 288 33 25 chr3 152572669 152572790 -7026993 + L1MA5 LINE L1 6160 6281 -19 1 1749 290 293 103 8 chr3 152574788 152574905 -7024878 - MIR3 SINE MIR -20 188 61 1 1749 21 36 0 0 chr3 152576647 152576675 -7023108 + AT_rich Low_complexity Low_complexity 1 28 0 1 1749 1034 211 20 0 chr3 152576683 152576887 -7022896 + B3 SINE B2 1 208 -8 1 1749 3747 43 5 2 chr3 152577182 152577628 -7022155 + LTRIS5 LTR ERV1 1 447 0 1 1749 270 0 0 0 chr3 152578190 152578220 -7021563 + (TGAA)n Simple_repeat Simple_repeat 1 30 0 1 1749 854 256 34 10 chr3 152579629 152579838 -7019945 - ID_B1 SINE B4 -8 216 3 1 1749 464 306 91 10 chr3 152581788 152581986 -7017797 + MIR SINE MIR 7 220 -42 1 1749 267 206 0 14 chr3 152582795 152582864 -7016919 - MLT1C LTR MaLR -353 114 47 1 1749 216 208 37 19 chr3 152583707 152583815 -7015968 + (TG)n Simple_repeat Simple_repeat 2 111 0 1 1749 397 270 16 44 chr3 152583817 152583999 -7015784 + (TATATG)n Simple_repeat Simple_repeat 4 180 0 1 1749 408 321 18 36 chr3 152584034 152584199 -7015584 - B4A SINE B4 -1 291 130 1 1749 251 286 11 11 chr3 152585307 152585399 -7014384 - MIR SINE MIR -92 170 79 1 1749 351 276 33 44 chr3 152585669 152585851 -7013932 + (CATATA)n Simple_repeat Simple_repeat 1 180 0 1 1749 480 89 0 0 chr3 152587136 152587215 -7012568 + (TCTG)n Simple_repeat Simple_repeat 2 80 0 1 1749 205 175 0 0 chr3 152587216 152587256 -7012527 + (TCTCTG)n Simple_repeat Simple_repeat 5 44 0 1 1749 336 286 17 26 chr3 152587591 152587706 -7012077 + RMER20A LTR ERVK 1 114 -513 1 1749 365 216 82 54 chr3 152587910 152588057 -7011726 + RMER20A LTR ERVK 366 516 0 1 1749 529 288 7 7 chr3 152588122 152588262 -7011521 - RSINE1 SINE B4 0 165 26 1 1749 859 285 106 87 chr3 152588266 152588635 -7011148 - MTE2a LTR MaLR -2 377 2 1 1749 319 239 91 35 chr3 152589366 152589509 -7010274 - ORR1E LTR MaLR -208 151 1 1 1749 206 269 0 19 chr3 152591512 152591565 -7008218 + T-rich Low_complexity Low_complexity 5 56 0 1 1749 697 264 84 36 chr3 152592519 152592770 -7007013 + B4 SINE B4 21 283 -9 1 1749 235 217 22 0 chr3 152592802 152592848 -7006935 + CT-rich Low_complexity Low_complexity 6 52 0 1 1749 1004 124 12 17 chr3 152592891 152593063 -7006720 + RLTR17 LTR ERVK 85 255 -437 1 1749 271 156 15 30 chr3 152593150 152593216 -7006567 + CT-rich Low_complexity Low_complexity 5 69 0 1 1749 333 312 86 0 chr3 152594068 152594196 -7005587 + B1_Mus1 SINE Alu 9 147 -1 1 1749 209 98 0 24 chr3 152594294 152594336 -7005447 + (TTTTG)n Simple_repeat Simple_repeat 1 41 0 1 1749 266 315 23 74 chr3 152594516 152594691 -7005092 + ORR1E LTR MaLR 98 263 -96 1 1749 393 22 0 0 chr3 152594949 152594995 -7004788 + (CA)n Simple_repeat Simple_repeat 1 46 0 1 1749 2128 111 3 69 chr3 152595369 152595717 -7004066 - ORR1A3 LTR MaLR -1 325 1 1 1749 727 221 0 0 chr3 152596518 152596649 -7003134 - ID_B1 SINE B4 -5 219 89 1 1749 1677 227 109 81 chr3 152596775 152597052 -7002731 + RLTR40 LTR ERVK 2 302 -515 1 1749 195 129 0 0 chr3 152597052 152597083 -7002700 + (TG)n Simple_repeat Simple_repeat 1 31 0 1 1749 411 21 0 0 chr3 152597083 152597130 -7002653 + (GA)n Simple_repeat Simple_repeat 1 48 0 1 1749 1677 227 109 81 chr3 152597130 152597595 -7002188 + RLTR40 LTR ERVK 303 764 -53 1 1749 295 300 121 15 chr3 152599142 152599274 -7000509 + B1_Mur1 SINE Alu 3 148 -1 1 1749 584 261 73 59 chr3 152599602 152599822 -6999961 + B4 SINE B4 1 223 -69 1 1749 258 297 11 21 chr3 152600282 152600375 -6999408 + (CCTG)n Simple_repeat Simple_repeat 3 94 0 1 1749 243 146 0 0 chr3 152600381 152600436 -6999347 + (TCTCTG)n Simple_repeat Simple_repeat 6 60 0 1 1749 225 0 0 0 chr3 152600433 152600458 -6999325 + (TG)n Simple_repeat Simple_repeat 2 26 0 1 1749 1108 103 0 0 chr3 152600557 152600712 -6999071 + B2_Mm2 SINE B2 3 157 -38 1 1749 351 0 0 0 chr3 152600712 152600751 -6999032 + (TAAA)n Simple_repeat Simple_repeat 4 42 0 1 1749 840 121 25 10 chr3 152601775 152602188 -6997595 + (CA)n Simple_repeat Simple_repeat 1 419 0 1 1749 289 295 50 44 chr3 152602703 152602884 -6996899 - L1MD1 LINE L1 -1 6241 6060 1 1749 538 315 94 22 chr3 152603138 152603544 -6996239 - L1MD1 LINE L1 -1461 4685 4251 1 1749 471 192 20 10 chr3 152604025 152604125 -6995658 + MTD LTR MaLR 81 181 -238 1 1749 312 179 15 0 chr3 152604122 152604189 -6995594 + MTD LTR MaLR 337 404 -15 1 1749 21 57 0 0 chr3 152605225 152605260 -6994523 + AT_rich Low_complexity Low_complexity 1 35 0 1 1749 537 122 136 25 chr3 152605349 152605467 -6994316 + B1_Mur2 SINE Alu 2 132 -17 1 1749 368 233 72 36 chr3 152605467 152605487 -6994296 + B4A SINE B4 87 229 -63 1 1749 423 0 0 0 chr3 152606649 152606696 -6993087 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 1749 312 267 186 0 chr3 152607074 152607204 -6992579 + MLT2B4 LTR ERVL 3 151 -405 1 1749 360 0 0 0 chr3 152607204 152607244 -6992539 + (TG)n Simple_repeat Simple_repeat 2 41 0 1 1749 312 267 186 0 chr3 152607244 152607285 -6992498 + MLT2B4 LTR ERVL 152 205 -351 1 1749 853 257 97 46 chr3 152608273 152608624 -6991159 - MTEa LTR MaLR -10 369 1 1 1749 966 221 106 4 chr3 152608672 152608899 -6990884 + ORR1D1 LTR MaLR 1 250 -124 1 1749 337 268 102 39 chr3 152608964 152609092 -6990691 + ORR1E LTR MaLR 1 136 -223 1 1749 795 301 23 8 chr3 152609441 152609702 -6990081 - B4 SINE B4 -3 289 25 1 1749 196 269 162 63 chr3 152610895 152611006 -6988777 - MIRc SINE MIR -120 148 27 1 1749 378 0 0 0 chr3 152611570 152611612 -6988171 + (CA)n Simple_repeat Simple_repeat 2 43 0 1 1749 518 299 90 63 chr3 152611744 152612012 -6987771 + MLT1A0 LTR MaLR 84 346 -28 1 1749 679 270 11 11 chr3 152612120 152612300 -6987483 + Lx8 LINE L1 6774 6953 -520 1 1749 1160 263 70 20 chr3 152612480 152612825 -6986958 + Lx8 LINE L1 6963 7324 -149 1 1749 1063 217 239 18 chr3 152613408 152613751 -6986032 - MTD LTR MaLR 0 419 1 1 1749 1021 168 69 25 chr3 152613802 152614004 -6985779 - MTE2b LTR MaLR 0 379 169 1 1749 537 289 96 37 chr3 152614011 152614198 -6985585 - B3A SINE B2 0 198 1 1 1749 686 284 28 6 chr3 152614198 152614371 -6985412 - MTE2b LTR MaLR -199 180 4 1 1749 224 290 84 78 chr3 152614457 152614599 -6985184 - L2 LINE L2 -994 2425 2283 1 1749 396 0 0 0 chr3 152615648 152615692 -6984091 + (TG)n Simple_repeat Simple_repeat 1 44 0 1 1749 1045 263 38 15 chr3 152615700 152615966 -6983817 - B4 SINE B4 -20 272 1 1 1749 599 82 10 0 chr3 152616129 152616211 -6983572 + (TC)n Simple_repeat Simple_repeat 2 84 0 1 1749 297 0 0 0 chr3 152616211 152616244 -6983539 + (CA)n Simple_repeat Simple_repeat 1 33 0 1 1749 599 82 10 0 chr3 152616244 152616258 -6983525 + (TC)n Simple_repeat Simple_repeat 2 15 0 1 1749 1146 71 0 0 chr3 152616259 152616400 -6983383 - B1_Mus1 SINE Alu -6 142 2 1 1749 303 329 76 17 chr3 152617295 152617533 -6982250 - L1MB8 LINE L1 -38 6140 5889 1 1749 645 284 15 59 chr3 152617560 152617762 -6982021 - B3A SINE B2 -4 194 2 1 1749 211 207 29 7 chr3 152617952 152618088 -6981695 + (TA)n Simple_repeat Simple_repeat 2 140 0 1 1749 298 330 80 58 chr3 152618239 152618564 -6981219 + RLTR15 LTR ERVK 3 334 -25 1 1749 1854 244 37 28 chr3 152618755 152619291 -6980492 - Lx7 LINE L1 -365 7331 6791 1 1749 696 313 130 64 chr3 152619634 152620443 -6979340 - L1MB8 LINE L1 -873 5273 4412 1 1749 774 153 13 13 chr3 152620454 152620613 -6979170 + CT-rich Low_complexity Low_complexity 2 160 0 1 1749 379 268 35 26 chr3 152620623 152620738 -6979045 - L1MB8 LINE L1 -1754 4392 4277 1 1749 782 174 23 121 chr3 152621958 152622410 -6977373 + RLTR6_Mm LTR ERV1 1 447 0 1 1749 189 0 0 0 chr3 152622562 152622583 -6977200 + (T)n Simple_repeat Simple_repeat 1 21 0 1 1749 210 216 0 0 chr3 152622889 152622926 -6976857 + (CG)n Simple_repeat Simple_repeat 2 38 0 1 1749 441 0 0 0 chr3 152622927 152622976 -6976807 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 1749 643 280 38 69 chr3 152623009 152623297 -6976486 - B4A SINE B4 -12 280 2 1 1749 182 37 37 0 chr3 152623405 152623432 -6976351 + (TTTCC)n Simple_repeat Simple_repeat 4 31 0 1 1749 322 317 33 28 chr3 152624113 152624267 -6975516 + B4 SINE B4 37 192 -100 1 1749 260 246 0 55 chr3 152624307 152624373 -6975410 + B4 SINE B4 161 222 -70 1 1749 525 311 50 11 chr3 152624373 152624552 -6975231 + B3A SINE B2 3 188 -10 1 1749 473 195 0 24 chr3 152624567 152624651 -6975132 + B4 SINE B4 211 292 0 1 1749 801 281 123 7 chr3 152625440 152625845 -6973938 + L1M4 LINE L1 4861 5312 -834 1 1749 376 304 21 107 chr3 152625846 152626089 -6973694 + B4A SINE B4 1 222 -70 1 1749 1697 161 138 3 chr3 152626279 152626628 -6973155 + RMER1A Other Other 625 1020 -10 1 1749 336 77 0 0 chr3 152626962 152627014 -6972769 + (TG)n Simple_repeat Simple_repeat 1 52 0 1 1749 598 160 74 30 chr3 152627108 152627243 -6972540 + B1F1 SINE Alu 4 144 -5 2 1749 547 263 49 49 chr3 152627403 152627607 -6972176 - Zaphod DNA Tip100 -2681 1350 1147 2 1749 239 189 21 0 chr3 152628200 152628261 -6971522 + PB1D7 SINE Alu 55 127 0 2 1749 1005 205 22 58 chr3 152630447 152630670 -6969113 + B3 SINE B2 1 215 -1 2 1749 296 348 27 0 chr3 152630687 152630799 -6968984 + PB1D10 SINE Alu 3 117 0 2 1749 264 256 180 145 chr3 152631353 152631581 -6968202 + ORR1E LTR MaLR 119 354 -5 2 1749 329 241 149 18 chr3 152631780 152631894 -6967889 + MLT1A1 LTR MaLR 270 398 -10 2 1749 189 267 31 77 chr3 152634099 152634164 -6965619 + L2c LINE L2 3301 3362 -25 2 1749 691 281 34 44 chr3 152634328 152634533 -6965250 - B3A SINE B2 -4 212 10 2 1749 1166 186 211 14 chr3 152635242 152635592 -6964191 + MTD LTR MaLR 1 419 0 2 1749 612 205 22 50 chr3 152635610 152635790 -6963993 + MTD-int LTR MaLR 31 205 -1053 2 1749 195 100 0 0 chr3 152635812 152635842 -6963941 + (TG)n Simple_repeat Simple_repeat 1 30 0 2 1749 413 206 22 29 chr3 152635880 152636199 -6963584 + (TG)n Simple_repeat Simple_repeat 1 316 0 2 1749 218 194 0 14 chr3 152636215 152636288 -6963495 + (TG)n Simple_repeat Simple_repeat 1 72 0 2 1749 362 300 66 97 chr3 152636295 152636614 -6963169 - B4A SINE B4 -21 271 5 2 1749 220 199 132 2 chr3 152636926 152636990 -6962793 + MIR SINE MIR 54 117 -91 2 1749 195 308 73 18 chr3 152638290 152638399 -6961384 + L2c LINE L2 3266 3380 -7 2 1749 493 235 0 34 chr3 152639257 152639376 -6960407 - RSINE1 SINE B4 0 165 51 2 1749 250 290 151 29 chr3 152639828 152640034 -6959749 - LFSINE_Vert SINE SINE -131 328 98 2 1749 212 161 16 0 chr3 152640140 152640202 -6959581 + GA-rich Low_complexity Low_complexity 1 63 0 2 1749 402 211 29 23 chr3 152641510 152641685 -6958098 + CT-rich Low_complexity Low_complexity 2 177 0 2 1749 315 301 73 47 chr3 152641709 152641859 -6957924 - HAL1-3A_ME LINE L1 -421 2437 2284 2 1749 393 22 0 0 chr3 152641859 152641905 -6957878 + (TTTC)n Simple_repeat Simple_repeat 1 46 0 2 1749 240 326 21 11 chr3 152641906 152641999 -6957784 + CT-rich Low_complexity Low_complexity 3 96 0 2 1749 316 265 45 15 chr3 152642004 152642105 -6957678 - B1F SINE Alu -9 111 9 2 1749 306 0 0 0 chr3 152644135 152644169 -6955614 + (CTG)n Simple_repeat Simple_repeat 3 36 0 2 1749 243 140 0 0 chr3 152647166 152647216 -6952567 + (TC)n Simple_repeat Simple_repeat 2 51 0 2 1749 232 231 11 161 chr3 152647272 152647365 -6952418 - L2a LINE L2 -3 3423 3345 2 1749 428 289 107 8 chr3 152647450 152647572 -6952211 + B1_Mur2 SINE Alu 14 147 -2 2 1749 180 311 0 0 chr3 152648118 152648240 -6951543 + (TG)n Simple_repeat Simple_repeat 1 122 0 2 1749 216 273 0 0 chr3 152648282 152648381 -6951402 + (TG)n Simple_repeat Simple_repeat 2 100 0 2 1749 264 258 0 35 chr3 152648362 152648531 -6951252 + (TATG)n Simple_repeat Simple_repeat 4 166 0 2 1749 752 245 106 75 chr3 152648548 152648830 -6950953 - B4 SINE B4 0 292 2 2 1749 482 108 12 0 chr3 152649169 152649252 -6950531 + (TG)n Simple_repeat Simple_repeat 1 84 0 2 1749 277 311 133 28 chr3 152649282 152649530 -6950253 - B4 SINE B4 -18 274 1 2 1749 1232 267 33 67 chr3 152650122 152650458 -6949325 - MTEb LTR MaLR -2 377 49 2 1749 945 269 65 54 chr3 152650458 152650811 -6948972 - ORR1E LTR MaLR -2 357 1 2 1749 1232 267 33 67 chr3 152650811 152650863 -6948920 - MTEb LTR MaLR -331 48 2 2 1749 189 267 167 0 chr3 152650873 152650963 -6948820 - MIRb SINE MIR -88 180 76 2 1749 4261 39 0 0 chr3 152651038 152651531 -6948252 - L1Md_T LINE L1 -2 6580 6088 2 1749 7337 12 0 0 chr3 152651531 152652347 -6947436 + L1_Mm LINE L1 5055 5870 -13 2 1749 578 291 237 13 chr3 152652506 152652738 -6947045 + B4A SINE B4 5 288 -4 2 1749 1011 314 77 6 chr3 152652959 152653427 -6946356 - L1ME2 LINE L1 -191 5973 5473 2 1749 378 255 103 9 chr3 152653693 152653800 -6945983 - PB1D10 SINE Alu 0 117 1 2 1749 326 378 58 16 chr3 152653827 152654018 -6945765 + MIRb SINE MIR 39 237 -31 2 1749 539 320 58 13 chr3 152654109 152654329 -6945454 - MIRc SINE MIR -2 266 41 2 1749 6348 142 41 1 chr3 152654490 152656162 -6943621 - Lx5 LINE L1 -452 6598 4870 2 1749 2132 223 18 9 chr3 152656164 152656598 -6943185 + Lx5 LINE L1 6612 7049 -1 2 1749 220 265 30 15 chr3 152657070 152657204 -6942579 + (TA)n Simple_repeat Simple_repeat 1 136 0 2 1749 239 250 15 59 chr3 152657225 152657293 -6942490 + B4A SINE B4 115 179 -113 2 1749 367 296 86 9 chr3 152657309 152657425 -6942358 - ID_B1 SINE B4 -15 209 85 2 1749 870 10 0 0 chr3 152658449 152658548 -6941235 + (TG)n Simple_repeat Simple_repeat 2 100 0 2 1749 547 261 23 113 chr3 152658549 152658726 -6941057 - B3 SINE B2 -54 162 2 2 1749 258 303 26 0 chr3 152658877 152658953 -6940830 - MIR SINE MIR -117 145 68 2 1749 286 319 199 30 chr3 152660504 152660775 -6939008 - MER74A LTR ERVL -30 528 212 2 1749 361 245 11 11 chr3 152660813 152660908 -6938875 + PB1D10 SINE Alu 23 117 0 2 1749 479 198 10 0 chr3 152661604 152661700 -6938083 + B4A SINE B4 196 292 0 2 1749 650 208 0 7 chr3 152661700 152661855 -6937928 + (CA)n Simple_repeat Simple_repeat 1 154 0 2 1749 272 317 89 113 chr3 152662320 152662612 -6937171 - B4 SINE B4 -6 286 2 2 1749 373 333 71 38 chr3 152662955 152663167 -6936616 - RMER12 LTR ERVK -334 988 770 2 1749 5458 159 26 2 chr3 152663373 152664257 -6935526 - Lx5 LINE L1 -1 7049 6145 2 1749 5379 145 35 6 chr3 152664260 152665380 -6934403 + Lx5 LINE L1 4982 6143 -907 2 1749 627 297 103 33 chr3 152665403 152665675 -6934108 + B4 SINE B4 2 292 0 2 1749 762 181 0 0 chr3 152667094 152667243 -6932540 + (TA)n Simple_repeat Simple_repeat 1 149 0 2 1749 270 197 50 17 chr3 152667366 152667485 -6932298 + (TA)n Simple_repeat Simple_repeat 1 123 0 2 1749 523 325 0 0 chr3 152667511 152667637 -6932146 - RSINE1 SINE B4 -38 127 2 2 1749 257 136 114 80 chr3 152667678 152667766 -6932017 - L1MC4 LINE L1 -362 7680 7590 2 1749 914 297 50 68 chr3 152667910 152668261 -6931522 + Lx9 LINE L1 7025 7380 -264 2 1749 2961 37 40 3 chr3 152668261 152668613 -6931170 + RLTR10B2 LTR ERVK 1 365 0 2 1749 914 297 50 68 chr3 152668613 152668763 -6931020 + Lx9 LINE L1 7381 7517 -127 2 1749 448 223 14 0 chr3 152668763 152668902 -6930881 + (TATATG)n Simple_repeat Simple_repeat 6 146 0 2 1749 280 234 73 57 chr3 152668910 152669087 -6930696 + Lx9 LINE L1 7421 7600 -44 2 1749 497 306 35 35 chr3 152669178 152669435 -6930348 + L1M4c LINE L1 1501 1757 -4627 2 1749 4203 114 18 2 chr3 152670326 152670932 -6928851 + Lx LINE L1 6035 6650 -4 2 1749 258 231 43 32 chr3 152671263 152671357 -6928426 + L1M4c LINE L1 4101 4195 -2181 2 1749 564 241 9 0 chr3 152671357 152671473 -6928310 + B3 SINE B2 20 136 -80 2 1749 252 357 19 6 chr3 152671765 152671923 -6927860 - L1MC4a LINE L1 -1262 6620 6461 2 1749 235 72 23 23 chr3 152672832 152672875 -6926908 + (CCCCCT)n Simple_repeat Simple_repeat 2 44 0 2 1749 254 306 113 77 chr3 152674015 152674210 -6925573 - LTR40a LTR ERVL -125 394 193 2 1749 183 80 0 0 chr3 152674866 152674891 -6924892 + (TTAA)n Simple_repeat Simple_repeat 1 25 0 2 1749 245 189 43 19 chr3 152674889 152675051 -6924732 + (TA)n Simple_repeat Simple_repeat 2 167 0 2 1749 297 0 0 0 chr3 152675109 152675142 -6924641 + (GGGA)n Simple_repeat Simple_repeat 2 34 0 2 1749 2614 80 0 0 chr3 152675293 152675620 -6924163 + ORR1A2 LTR MaLR 1 327 0 2 1749 273 337 11 0 chr3 152676510 152676605 -6923178 - LTR90B LTR LTR -528 268 173 2 1749 306 0 0 0 chr3 152676680 152676714 -6923069 + (TG)n Simple_repeat Simple_repeat 2 35 0 2 1749 306 98 0 0 chr3 152676938 152676989 -6922794 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 2 1749 342 0 0 0 chr3 152677403 152677441 -6922342 + (TG)n Simple_repeat Simple_repeat 1 38 0 2 1749 791 161 0 22 chr3 152677442 152677626 -6922157 + GA-rich Low_complexity Low_complexity 1 180 0 2 1749 677 257 21 0 chr3 152678879 152679019 -6920764 + RSINE1 SINE B4 4 146 -19 2 1749 471 78 0 0 chr3 152679019 152679083 -6920700 + (TC)n Simple_repeat Simple_repeat 1 64 0 2 1749 436 318 32 23 chr3 152679129 152679348 -6920435 + L1M6 LINE L1 1772 1992 -4504 2 1749 208 160 0 57 chr3 152679601 152679654 -6920129 + GA-rich Low_complexity Low_complexity 4 53 0 2 1749 207 0 0 0 chr3 152680055 152680078 -6919705 + (TG)n Simple_repeat Simple_repeat 1 23 0 2 1749 183 146 0 0 chr3 152681560 152681601 -6918182 + (TTTTTG)n Simple_repeat Simple_repeat 2 42 0 2 1749 1105 245 56 82 chr3 152681763 152682154 -6917629 + MTD LTR MaLR 31 411 -8 2 1749 261 278 27 36 chr3 152684272 152684384 -6915399 + MER117 DNA MER1_type 60 170 -27 2 1749 275 291 0 10 chr3 152684413 152684624 -6915159 + CT-rich Low_complexity Low_complexity 1 208 0 2 1749 427 318 124 6 chr3 152685910 152686087 -6913696 + B3A SINE B2 1 198 0 2 1749 282 95 0 0 chr3 152686157 152686199 -6913584 + (CATA)n Simple_repeat Simple_repeat 4 45 0 2 1749 2813 62 13 3 chr3 152686199 152686590 -6913193 - MTB LTR MaLR 0 400 6 2 1749 729 38 29 0 chr3 152686592 152686697 -6913086 + (CATA)n Simple_repeat Simple_repeat 2 109 0 2 1749 222 295 189 9 chr3 152686715 152686821 -6912962 + MIR SINE MIR 48 172 -90 2 1749 432 0 0 0 chr3 152687441 152687489 -6912294 + (TG)n Simple_repeat Simple_repeat 1 48 0 2 1749 238 269 119 0 chr3 152688520 152688587 -6911196 - PB1D10 SINE Alu -27 90 16 2 1749 261 0 0 0 chr3 152688733 152688762 -6911021 + (CA)n Simple_repeat Simple_repeat 1 29 0 2 1749 303 282 0 34 chr3 152692025 152692113 -6907670 - B1_Mur3 SINE Alu -60 89 5 2 1749 234 239 71 35 chr3 152692623 152692736 -6907047 - Lx4A LINE L1 0 7058 6942 2 1749 290 232 73 0 chr3 152692736 152692818 -6906965 - MTEb LTR MaLR -13 366 279 2 1749 668 314 27 11 chr3 152693762 152694023 -6905760 - RMER15 LTR ERVL -105 470 206 2 1749 21 36 0 0 chr3 152694048 152694076 -6905707 + AT_rich Low_complexity Low_complexity 1 28 0 3 1749 415 196 423 10 chr3 152694135 152694316 -6905467 - MTEb LTR MaLR -118 261 5 2 1749 506 198 13 13 chr3 152696152 152696311 -6903472 + (TG)n Simple_repeat Simple_repeat 2 160 0 3 1749 208 305 136 40 chr3 152697442 152697640 -6902143 - L2a LINE L2 -1 3425 3209 3 1749 274 322 85 0 chr3 152698550 152698668 -6901115 + MTE2b LTR MaLR 6 133 -246 3 218 493 204 90 14 chr3 152698826 152698970 -6900813 + MTE2b LTR MaLR 225 379 0 3 1750 614 263 59 5 chr3 152700160 152700347 -6899436 - B3 SINE B2 -19 197 1 3 1750 432 0 0 0 chr3 152700352 152700400 -6899383 + (TG)n Simple_repeat Simple_repeat 2 49 0 3 1750 359 297 9 18 chr3 152700468 152700581 -6899202 - PB1D10 SINE Alu -5 112 1 3 1750 294 189 135 0 chr3 152700947 152701021 -6898762 + MER34 LTR ERV1 18 101 -441 3 1750 1888 272 105 36 chr3 152701257 152701941 -6897842 - Lx8 LINE L1 -5 7468 6738 3 1750 198 311 0 16 chr3 152702460 152702522 -6897261 - MIRm SINE MIR -124 152 92 3 1750 462 36 0 0 chr3 152703055 152703111 -6896672 + (TCC)n Simple_repeat Simple_repeat 3 58 0 3 1750 207 0 0 0 chr3 152703112 152703135 -6896648 + (TG)n Simple_repeat Simple_repeat 2 24 0 3 1750 247 328 110 12 chr3 152703428 152703607 -6896176 - MIRc SINE MIR -49 219 28 3 1750 1896 90 32 0 chr3 152704059 152704338 -6895445 - ORR1A2 LTR MaLR -8 319 32 3 1750 356 263 34 34 chr3 152705246 152705364 -6894419 + HAL1b LINE L1 1102 1219 -790 3 1750 1536 115 134 10 chr3 152705941 152706231 -6893552 - RMER13A LTR ERVK -517 343 18 3 1750 741 123 0 0 chr3 152706773 152706911 -6892872 + (GA)n Simple_repeat Simple_repeat 1 138 0 3 1750 424 305 0 0 chr3 152707438 152707556 -6892227 + MTEa LTR MaLR 11 128 -231 3 1750 472 271 34 73 chr3 152707622 152707837 -6891946 + MTEa LTR MaLR 131 365 -14 3 1750 418 288 0 0 chr3 152708118 152708236 -6891547 - HERV16-int LTR ERVL -2194 3567 3450 3 1750 561 328 67 24 chr3 152708255 152708583 -6891200 - HERV16-int LTR ERVL -2359 2637 2296 3 1750 465 19 0 0 chr3 152708722 152708776 -6891007 + (CA)n Simple_repeat Simple_repeat 2 55 0 3 1750 357 174 0 0 chr3 152708785 152708854 -6890929 + (TA)n Simple_repeat Simple_repeat 2 70 0 3 1750 814 255 160 7 chr3 152708866 152709135 -6890648 - MTEb LTR MaLR 0 379 70 3 1750 286 155 103 0 chr3 152709252 152709310 -6890473 - MTEb LTR MaLR -315 64 1 3 1750 361 361 24 12 chr3 152709360 152709528 -6890255 - HERV16-int LTR ERVL -2948 2048 1879 3 1750 221 196 0 18 chr3 152709577 152709634 -6890149 + (CATATA)n Simple_repeat Simple_repeat 4 59 0 3 1750 637 325 148 16 chr3 152710082 152710467 -6889316 + MER21B LTR ERV1 368 803 -60 3 1750 203 209 23 0 chr3 152710678 152710721 -6889062 + T-rich Low_complexity Low_complexity 3 46 0 3 1750 585 265 98 47 chr3 152711053 152711370 -6888413 - HERV16-int LTR ERVL -3854 1142 810 3 1750 432 367 83 7 chr3 152712100 152712377 -6887406 - LTR16A LTR ERVL -5 446 149 3 1750 205 340 54 42 chr3 152712565 152712731 -6887052 - MIR SINE MIR -42 220 53 3 1750 241 281 16 0 chr3 152712895 152712959 -6886824 - ID4_ SINE ID 0 83 19 3 1750 249 258 27 0 chr3 152713769 152713851 -6885932 - B1F SINE Alu -1 148 32 3 1750 297 0 0 0 chr3 152713868 152713901 -6885882 + (CAAT)n Simple_repeat Simple_repeat 3 35 0 3 1750 353 269 82 18 chr3 152713907 152714017 -6885766 - MTE2b LTR MaLR -59 320 204 3 1750 1470 196 108 29 chr3 152714437 152714851 -6884932 - RMER16 LTR ERVK 0 533 1 3 1750 825 271 92 46 chr3 152715129 152715435 -6884348 + ORR1D2 LTR MaLR 51 370 0 3 1750 460 256 8 0 chr3 152715436 152715553 -6884230 + ORR1D2-int LTR MaLR 2 119 -1251 3 1750 180 319 43 14 chr3 152715723 152715793 -6883990 - L3 LINE CR1 -3541 948 877 3 1750 588 96 26 0 chr3 152716094 152716209 -6883574 + (TG)n Simple_repeat Simple_repeat 2 119 0 3 1750 619 258 32 6 chr3 152716278 152716434 -6883349 - B3A SINE B2 -36 162 3 3 1750 22 0 0 0 chr3 152716735 152716757 -6883026 + AT_rich Low_complexity Low_complexity 1 22 0 3 1750 270 207 0 0 chr3 152716757 152716815 -6882968 + (TG)n Simple_repeat Simple_repeat 1 58 0 3 1750 480 269 0 1 chr3 152716896 152717024 -6882759 - B4A SINE B4 -52 240 113 3 1750 181 279 43 14 chr3 152717565 152717634 -6882149 - L3 LINE CR1 -4277 212 142 3 1750 803 115 44 16 chr3 152717821 152718141 -6881642 + (TCTA)n Simple_repeat Simple_repeat 1 329 0 3 1750 506 248 0 93 chr3 152718558 152718687 -6881096 + PB1D10 SINE Alu 1 117 0 3 1750 711 196 20 20 chr3 152719453 152719599 -6880184 + B1_Mur4 SINE Alu 5 150 0 3 1750 911 279 110 9 chr3 152720971 152721307 -6878476 + ORR1D2 LTR MaLR 1 370 0 3 1750 1413 55 0 5 chr3 152722522 152722742 -6877041 + (TTTC)n Simple_repeat Simple_repeat 1 219 0 3 1750 1165 71 12 6 chr3 152723074 152723243 -6876540 + (TTCCC)n Simple_repeat Simple_repeat 4 173 0 3 1750 264 200 0 0 chr3 152723252 152723307 -6876476 + C-rich Low_complexity Low_complexity 5 59 0 3 1750 371 257 44 44 chr3 152723358 152723472 -6876311 - PB1D7 SINE Alu -2 118 5 3 1750 549 0 0 0 chr3 152724222 152724283 -6875500 + (TC)n Simple_repeat Simple_repeat 2 62 0 3 1750 340 283 28 9 chr3 152724489 152724563 -6875220 + PB1D10 SINE Alu 1 77 -40 3 1750 1424 170 156 9 chr3 152724563 152724745 -6875038 - ORR1D1 LTR MaLR 0 374 154 3 1750 402 21 0 0 chr3 152724745 152724792 -6874991 + (GA)n Simple_repeat Simple_repeat 1 47 0 3 1750 1424 170 156 9 chr3 152724792 152724935 -6874848 - ORR1D1 LTR MaLR -221 153 2 3 1750 340 283 28 9 chr3 152724935 152724967 -6874816 + PB1D10 SINE Alu 78 109 -8 3 1750 653 235 39 13 chr3 152726345 152726500 -6873283 - B4 SINE B4 -133 159 1 3 1750 338 222 14 0 chr3 152726792 152726864 -6872919 - MTD LTR MaLR -8 411 339 3 1750 723 202 48 0 chr3 152726873 152727041 -6872742 - MTD LTR MaLR -239 180 5 3 1750 258 242 0 0 chr3 152727336 152727402 -6872381 + (TG)n Simple_repeat Simple_repeat 1 66 0 3 1750 496 245 172 14 chr3 152727402 152727547 -6872236 - B3A SINE B2 -16 182 15 3 1750 581 289 128 14 chr3 152729256 152729467 -6870316 - MTE2b LTR MaLR -13 366 132 3 1750 381 266 72 32 chr3 152730513 152730734 -6869049 - L1MEg LINE L1 -5003 1081 852 3 1750 1270 195 118 15 chr3 152730858 152731197 -6868586 + ORR1D1 LTR MaLR 1 374 0 3 1750 433 128 47 0 chr3 152731197 152731283 -6868500 + (CACG)n Simple_repeat Simple_repeat 1 90 0 3 1750 353 260 110 0 chr3 152732712 152732839 -6866944 - B4A SINE B4 -149 143 3 3 1750 243 154 46 0 chr3 152733165 152733230 -6866553 + GA-rich Low_complexity Low_complexity 1 68 0 3 1750 396 0 0 0 chr3 152733602 152733646 -6866137 + (GA)n Simple_repeat Simple_repeat 1 44 0 3 1750 558 256 0 0 chr3 152733797 152733977 -6865806 + (CA)n Simple_repeat Simple_repeat 1 180 0 3 1750 211 376 21 0 chr3 152734689 152734782 -6865001 - MIRb SINE MIR -11 257 163 3 1750 263 303 57 16 chr3 152735190 152735314 -6864469 - MIRm SINE MIR -121 155 27 3 1750 3732 144 140 30 chr3 152737430 152738188 -6861595 + RMER21B LTR ERV1 2 842 0 3 1750 25 21 0 59 chr3 152738841 152738892 -6860891 + AT_rich Low_complexity Low_complexity 1 48 0 3 1750 533 246 31 87 chr3 152738983 152739179 -6860604 - B4 SINE B4 -106 186 2 3 1750 203 133 0 0 chr3 152741439 152741469 -6858314 + (GAA)n Simple_repeat Simple_repeat 1 30 0 3 1750 767 78 31 0 chr3 152741746 152741875 -6857908 + (TCTA)n Simple_repeat Simple_repeat 4 136 0 3 1750 485 334 69 51 chr3 152742445 152742795 -6856988 + ORR1E LTR MaLR 4 359 0 3 1750 382 244 134 0 chr3 152742982 152743109 -6856674 + MLT1C LTR MaLR 319 462 -5 3 1750 1372 222 94 6 chr3 152743460 152743800 -6855983 + ORR1D2 LTR MaLR 1 370 0 3 1750 247 239 62 27 chr3 152745526 152745638 -6854145 - MT2B2 LTR ERVL 0 584 469 3 1750 201 319 54 54 chr3 152745935 152746084 -6853699 + MER5B DNA MER1_type 26 174 -4 3 1750 912 139 0 0 chr3 152746823 152746981 -6852802 + (TG)n Simple_repeat Simple_repeat 1 158 0 3 1750 336 219 412 47 chr3 152747049 152747260 -6852523 - B4 SINE B4 -1 291 4 3 1750 198 0 0 0 chr3 152748010 152748032 -6851751 + (A)n Simple_repeat Simple_repeat 1 22 0 3 1750 365 327 83 14 chr3 152748905 152749122 -6850661 + MLT1C LTR MaLR 1 232 -235 3 1750 1330 259 18 24 chr3 152749431 152749811 -6849972 + MTE2b LTR MaLR 2 379 0 3 1750 1477 133 4 0 chr3 152750276 152750502 -6849281 - L1_Mm LINE L1 -546 5337 5111 3 1750 1501 127 4 0 chr3 152750515 152750743 -6849040 - L1_Mm LINE L1 -546 5337 5109 3 1750 5388 60 1 1 chr3 152750743 152751415 -6848368 + L1_Mus1 LINE L1 5896 6567 0 3 1750 469 273 254 3 chr3 152751751 152752040 -6847743 - L1MA4 LINE L1 -353 5938 5580 3 1750 183 167 0 0 chr3 152752055 152752097 -6847686 + (TG)n Simple_repeat Simple_repeat 1 42 0 3 1750 557 236 38 32 chr3 152752100 152752261 -6847522 - B3A SINE B2 -14 202 42 3 1750 484 116 10 10 chr3 152752574 152752670 -6847113 + (TG)n Simple_repeat Simple_repeat 2 97 0 3 1750 418 233 0 28 chr3 152752674 152752855 -6846928 + (TATATG)n Simple_repeat Simple_repeat 2 177 0 3 1750 267 219 16 0 chr3 152752860 152752924 -6846859 + (TATG)n Simple_repeat Simple_repeat 2 66 0 3 1750 251 294 0 6 chr3 152752926 152753090 -6846693 + (TATATG)n Simple_repeat Simple_repeat 3 165 0 3 1750 512 339 52 13 chr3 152753376 152753609 -6846174 - MLT1A0 LTR MaLR -80 285 44 3 1750 10007 12 0 0 chr3 152753620 152755452 -6844331 - L1Md_T LINE L1 0 6582 4751 3 1750 10782 24 1 0 chr3 152755452 152756703 -6843080 + L1Md_T LINE L1 3511 4762 -1121 3 1750 227 224 104 0 chr3 152756756 152756823 -6842960 + MIRb SINE MIR 110 183 -85 3 1750 297 340 26 20 chr3 152756876 152757029 -6842754 - MIR SINE MIR -77 185 32 3 1750 224 148 16 0 chr3 152757905 152757966 -6841817 + (TTTG)n Simple_repeat Simple_repeat 3 64 0 3 1750 872 195 32 26 chr3 152757966 152758156 -6841627 - B3 SINE B2 -25 191 1 3 1750 340 130 0 0 chr3 152758730 152758784 -6840999 - L1_Mm LINE L1 -527 5356 5303 3 1750 5907 64 4 9 chr3 152758784 152759403 -6840380 + L1_Mus1 LINE L1 5820 6440 -127 3 1750 4180 21 38 0 chr3 152759403 152759878 -6839905 - MT2_Mm LTR ERVL 0 493 1 3 1750 5907 64 4 9 chr3 152759878 152760010 -6839773 + L1_Mus1 LINE L1 6441 6567 0 3 1750 1052 91 0 7 chr3 152760049 152760204 -6839579 + (TCTCC)n Simple_repeat Simple_repeat 2 155 0 3 1750 25 0 0 0 chr3 152761612 152761637 -6838146 + AT_rich Low_complexity Low_complexity 1 25 0 3 1750 207 0 0 0 chr3 152762683 152762706 -6837077 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 4 1750 618 71 0 0 chr3 152764869 152764953 -6834830 + (TA)n Simple_repeat Simple_repeat 2 85 0 4 1750 2872 74 16 23 chr3 152765238 152765626 -6834157 - IAPEY_LTR LTR ERVK 0 385 1 4 1750 1177 256 114 6 chr3 152765658 152765992 -6833791 - ORR1D1 LTR MaLR -4 370 1 4 1750 237 65 0 0 chr3 152766195 152766226 -6833557 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 4 1750 1147 89 0 0 chr3 152766227 152766373 -6833410 - B1_Mus1 SINE Alu 0 148 3 4 1750 477 0 0 0 chr3 152766731 152766784 -6832999 + (TTTC)n Simple_repeat Simple_repeat 3 55 0 4 1750 293 365 49 39 chr3 152766889 152767094 -6832689 - MIR SINE MIR -24 238 32 4 1750 261 83 0 0 chr3 152767114 152767150 -6832633 + (GGGGA)n Simple_repeat Simple_repeat 5 40 0 4 1750 298 333 0 0 chr3 152767343 152767427 -6832356 + (TG)n Simple_repeat Simple_repeat 1 84 0 4 1750 508 313 0 0 chr3 152767436 152767570 -6832213 - RSINE1 SINE B4 -15 150 17 4 1750 266 283 117 29 chr3 152768292 152768463 -6831320 - LTR89 LTR ERVL? -648 231 46 4 1750 270 314 202 16 chr3 152768747 152768999 -6830784 + MLT1N2 LTR MaLR 242 540 -22 4 1750 4068 123 91 11 chr3 152769164 152769864 -6829919 + RMER6A LTR ERVK 1 756 0 4 1750 226 348 16 65 chr3 152772816 152772939 -6826844 - PB1D10 SINE Alu 0 117 1 4 1750 684 232 26 31 chr3 152774069 152774260 -6825523 + B3A SINE B2 1 190 -8 4 1750 282 295 34 51 chr3 152774278 152774396 -6825387 + B3A SINE B2 67 182 -16 4 1750 551 206 0 6 chr3 152774396 152774557 -6825226 + (CA)n Simple_repeat Simple_repeat 1 160 0 4 1750 210 83 0 77 chr3 152775150 152775202 -6824581 + (TTA)n Simple_repeat Simple_repeat 2 49 0 4 1750 543 300 74 15 chr3 152775227 152775430 -6824353 - ID_B1 SINE B4 0 224 10 4 1750 4553 110 54 35 chr3 152775582 152776489 -6823294 - RMER17B LTR ERVK 0 958 1 4 1750 680 147 43 35 chr3 152776761 152776902 -6822881 + B1_Mus1 SINE Alu 6 147 -1 4 1750 479 95 14 0 chr3 152777006 152777080 -6822703 + (GA)n Simple_repeat Simple_repeat 1 75 0 4 1750 549 0 0 0 chr3 152777080 152777141 -6822642 + (GGAA)n Simple_repeat Simple_repeat 4 64 0 4 1750 604 279 102 12 chr3 152778104 152778438 -6821345 + L1MB4 LINE L1 4196 4559 -1581 4 1750 475 327 90 24 chr3 152778438 152778726 -6821057 + MLT1A0 LTR MaLR 1 307 -58 4 1750 625 297 72 40 chr3 152778729 152779006 -6820777 + B4A SINE B4 1 286 -6 4 1750 464 222 163 66 chr3 152779438 152779916 -6819867 + L1MB4 LINE L1 4953 5484 -700 4 1750 336 143 0 0 chr3 152780147 152780217 -6819566 + (TC)n Simple_repeat Simple_repeat 1 70 0 4 1750 326 275 7 55 chr3 152780224 152780370 -6819413 + L1MB4 LINE L1 5776 5914 -266 4 1750 201 156 0 0 chr3 152780703 152780735 -6819048 + (TGAA)n Simple_repeat Simple_repeat 3 34 0 4 1750 856 281 82 19 chr3 152782401 152782818 -6816965 - MT2A LTR ERVL -8 525 83 4 1750 276 296 102 36 chr3 152782744 152782881 -6816902 - MTEa LTR MaLR -209 170 25 4 1750 250 317 71 43 chr3 152783797 152784008 -6815775 - MLT1K LTR MaLR -111 484 268 4 1750 1032 238 130 18 chr3 152784307 152784645 -6815138 - MTEb LTR MaLR -1 378 3 4 1750 1557 239 22 0 chr3 152785284 152785653 -6814130 - MTEb LTR MaLR 0 379 3 4 1750 927 179 0 0 chr3 152786703 152786882 -6812901 + (CATTC)n Simple_repeat Simple_repeat 2 180 0 4 1750 234 128 0 0 chr3 152787203 152787242 -6812541 + (CA)n Simple_repeat Simple_repeat 2 40 0 4 1750 228 85 0 78 chr3 152787717 152787781 -6812002 + A-rich Low_complexity Low_complexity 2 60 0 4 1750 293 207 0 11 chr3 152788184 152788272 -6811511 + GA-rich Low_complexity Low_complexity 2 88 0 4 1750 279 0 0 0 chr3 152788664 152788695 -6811088 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 4 1750 549 241 95 0 chr3 152789089 152789247 -6810536 + ORR1E LTR MaLR 5 177 -182 4 1750 2115 110 51 72 chr3 152789256 152789354 -6810429 + RLTR23 LTR ERV1 10 115 -315 4 1750 828 72 36 7 chr3 152789354 152789493 -6810290 + L1_Mus4 LINE L1 6494 6636 0 4 1750 2115 110 51 72 chr3 152789493 152789824 -6809959 + RLTR23 LTR ERV1 116 430 0 4 1750 389 249 20 147 chr3 152789827 152790025 -6809758 + ORR1E LTR MaLR 206 378 -1 4 1750 227 211 31 215 chr3 152790034 152790197 -6809586 - L1M4 LINE L1 -6407 135 3 4 1750 1281 61 0 0 chr3 152790410 152790626 -6809157 + (CA)n Simple_repeat Simple_repeat 1 216 0 4 1750 251 287 65 14 chr3 152790637 152790775 -6809008 - L1MEc LINE L1 -5579 821 677 4 1750 576 42 0 0 chr3 152791594 152791665 -6808118 + (TAGA)n Simple_repeat Simple_repeat 2 72 0 4 1750 1142 68 0 7 chr3 152791730 152791877 -6807906 - B1_Mus1 SINE Alu -2 146 1 4 1750 480 247 0 0 chr3 152792581 152792735 -6807048 + CT-rich Low_complexity Low_complexity 1 154 0 4 1750 365 111 0 31 chr3 152792745 152792810 -6806973 + (TATG)n Simple_repeat Simple_repeat 4 66 0 4 1750 850 280 4 13 chr3 152792811 152793050 -6806733 - RMER15 LTR ERVL -3 572 336 4 1750 290 271 90 7 chr3 152793064 152793209 -6806574 - RMER15 LTR ERVL -392 183 27 4 1750 351 78 0 0 chr3 152794495 152794546 -6805237 + (TG)n Simple_repeat Simple_repeat 2 52 0 4 1750 2186 165 76 31 chr3 152794635 152795054 -6804729 - Lx5 LINE L1 -723 6327 5890 4 1750 2936 182 23 121 chr3 152795058 152795791 -6803992 + Lx4B LINE L1 6327 6987 -71 4 1750 1173 94 13 0 chr3 152795789 152795948 -6803835 - Lx5 LINE L1 -238 5639 5479 4 1750 850 66 16 0 chr3 152795966 152796088 -6803695 + (TAGA)n Simple_repeat Simple_repeat 4 127 0 4 1750 661 271 93 29 chr3 152796102 152796307 -6803476 - B4 SINE B4 -70 222 5 4 1750 553 317 40 35 chr3 152796357 152796733 -6803050 + L1ME4a LINE L1 5558 5935 -189 4 1750 296 102 20 0 chr3 152797145 152797194 -6802589 + (TG)n Simple_repeat Simple_repeat 1 50 0 4 1750 492 300 46 60 chr3 152797199 152797483 -6802300 - L1ME3B LINE L1 -311 5929 5650 4 1750 2289 210 49 118 chr3 152798115 152798752 -6801031 - RMER1A Other Other -409 621 29 4 1750 467 41 41 0 chr3 152798758 152798831 -6800952 + MT2B LTR ERVL 526 601 0 4 1750 802 221 16 37 chr3 152798843 152799031 -6800752 - RMER1A Other Other -753 277 94 4 1750 380 233 58 0 chr3 152799031 152799117 -6800666 - RMER1B Other Other -731 335 245 4 1750 941 314 22 0 chr3 152799307 152799584 -6800199 + B4 SINE B4 8 290 -2 4 1750 21 0 0 0 chr3 152799750 152799771 -6800012 + AT_rich Low_complexity Low_complexity 1 21 0 4 1750 699 163 6 22 chr3 152799967 152800149 -6799634 + (CA)n Simple_repeat Simple_repeat 2 180 0 4 1750 804 195 3 0 chr3 152800166 152800566 -6799217 + (CA)n Simple_repeat Simple_repeat 1 401 0 4 1750 795 40 0 0 chr3 152802351 152802450 -6797333 + (TGG)n Simple_repeat Simple_repeat 2 100 0 4 1750 670 296 10 50 chr3 152802871 152803070 -6796713 + B4 SINE B4 2 192 -100 4 1750 269 277 21 21 chr3 152803171 152803267 -6796516 + GA-rich Low_complexity Low_complexity 5 100 0 4 1750 378 352 14 35 chr3 152803268 152803412 -6796371 + RSINE1 SINE B4 11 151 -14 4 1750 348 24 0 0 chr3 152803417 152803458 -6796325 + (CA)n Simple_repeat Simple_repeat 1 41 0 4 1750 989 171 119 15 chr3 152805367 152805569 -6794214 - URR1A DNA MER1_type -3 223 1 4 1750 494 339 103 38 chr3 152807704 152808130 -6791653 - MT2A LTR ERVL -79 454 1 4 1750 398 282 19 45 chr3 152811810 152811966 -6787817 - L1MB8 LINE L1 -44 6134 5983 4 1750 207 62 0 129 chr3 152811995 152812088 -6787695 + (CCCTG)n Simple_repeat Simple_repeat 4 84 0 4 1750 3336 46 2 2 chr3 152812393 152812789 -6786994 + MTA_Mm LTR MaLR 1 396 0 4 1750 501 183 9 9 chr3 152813003 152813108 -6786675 + B1_Mur3 SINE Alu 2 106 -43 4 1750 29 70 0 0 chr3 152813302 152813359 -6786424 + AT_rich Low_complexity Low_complexity 1 57 0 4 1750 450 0 0 0 chr3 152813447 152813497 -6786286 + (TAGA)n Simple_repeat Simple_repeat 3 52 0 4 1750 21 36 0 0 chr3 152813498 152813526 -6786257 + AT_rich Low_complexity Low_complexity 1 28 0 4 1750 557 239 48 87 chr3 152813925 152814131 -6785652 - B3A SINE B2 0 198 1 4 1750 436 281 145 34 chr3 152814480 152814742 -6785041 - L1M5 LINE L1 -453 5787 5497 4 1750 245 286 0 0 chr3 152814909 152814972 -6784811 - L1M5 LINE L1 -1039 5107 5045 4 1750 1337 164 104 0 chr3 152817109 152817377 -6782406 - MTD LTR MaLR -106 313 18 4 1750 482 219 16 11 chr3 152817501 152817641 -6782142 + MTD LTR MaLR 90 227 -194 4 1750 462 314 24 6 chr3 152818049 152818095 -6781688 - B3A SINE B2 0 198 151 4 1750 366 23 0 0 chr3 152818095 152818138 -6781645 + (TG)n Simple_repeat Simple_repeat 2 44 0 4 1750 462 314 24 6 chr3 152818138 152818261 -6781522 - B3A SINE B2 -48 150 27 4 1750 275 0 29 0 chr3 152818640 152818675 -6781108 + (TTTTG)n Simple_repeat Simple_repeat 2 37 0 4 1750 219 69 0 0 chr3 152818785 152818814 -6780969 + (GA)n Simple_repeat Simple_repeat 2 30 0 4 1750 6784 153 40 17 chr3 152818893 152818906 -6780877 - Lx4B LINE L1 -6 7052 7040 4 1750 351 65 0 0 chr3 152818906 152818952 -6780831 + (ATTG)n Simple_repeat Simple_repeat 2 47 0 4 1750 6784 153 40 17 chr3 152818952 152820201 -6779582 - Lx4B LINE L1 -19 7039 5760 4 1750 21 0 0 0 chr3 152820211 152820232 -6779551 + AT_rich Low_complexity Low_complexity 1 21 0 4 1750 548 314 11 51 chr3 152820237 152820256 -6779527 + B3 SINE B2 16 32 -184 4 1750 1114 249 129 3 chr3 152820256 152820627 -6779156 + MTD LTR MaLR 2 419 0 4 1750 548 314 11 51 chr3 152820627 152820785 -6778998 + B3 SINE B2 33 186 -30 4 1750 244 270 0 0 chr3 152822892 152822966 -6776817 + Zaphod DNA Tip100 3890 3963 -68 4 1750 249 159 0 80 chr3 152823728 152823865 -6775918 + GA-rich Low_complexity Low_complexity 2 127 0 4 1750 670 229 33 0 chr3 152824428 152824581 -6775202 - B4A SINE B4 -4 288 131 4 1750 286 231 71 25 chr3 152825345 152825446 -6774337 + MIR SINE MIR 112 221 -47 4 1750 1056 128 128 0 chr3 152825608 152825796 -6773987 - ORR1B2 LTR MaLR 0 367 156 4 1750 483 33 0 0 chr3 152827154 152827215 -6772568 + (TC)n Simple_repeat Simple_repeat 2 62 0 4 1750 4253 51 6 8 chr3 152827357 152827892 -6771891 + Lx3_Mus LINE L1 6475 7008 -1 4 1751 198 281 119 33 chr3 152830037 152830188 -6769595 - L2 LINE L2 -749 2670 2507 4 1751 459 0 0 0 chr3 152830310 152830361 -6769422 + (TC)n Simple_repeat Simple_repeat 2 52 0 5 1751 369 0 0 0 chr3 152830361 152830401 -6769382 + (TG)n Simple_repeat Simple_repeat 2 42 0 5 1751 189 0 0 0 chr3 152830443 152830464 -6769319 + (CAGA)n Simple_repeat Simple_repeat 2 22 0 5 1751 226 250 36 0 chr3 152830790 152830846 -6768937 - MER91A DNA Tip100 -135 61 4 5 1751 305 358 66 24 chr3 152830857 152831069 -6768714 - L2 LINE L2 -1363 2056 1836 4 1751 1166 62 7 0 chr3 152832197 152832343 -6767440 - B1_Mus1 SINE Alu 0 148 2 5 1751 903 285 105 9 chr3 152833597 152833930 -6765853 + MTE2b LTR MaLR 1 365 -14 5 1751 603 250 0 0 chr3 152834182 152834362 -6765421 + (TG)n Simple_repeat Simple_repeat 1 180 0 5 1751 198 298 0 0 chr3 152835375 152835469 -6764314 + (TG)n Simple_repeat Simple_repeat 1 94 0 5 1751 585 308 81 9 chr3 152835472 152835695 -6764088 - B4 SINE B4 -1 291 53 5 1751 308 141 74 0 chr3 152835782 152835917 -6763866 + (TA)n Simple_repeat Simple_repeat 1 145 0 5 1751 398 255 379 40 chr3 152835917 152836258 -6763525 - L1MB7 LINE L1 -13 6167 5711 5 1751 286 203 0 111 chr3 152836596 152836795 -6762988 + GA-rich Low_complexity Low_complexity 2 178 0 5 1751 456 275 22 30 chr3 152837031 152837166 -6762617 + ID_B1 SINE B4 80 213 -11 5 1751 189 0 0 0 chr3 152837852 152837873 -6761910 + (GGGTG)n Simple_repeat Simple_repeat 3 23 0 5 1751 256 277 26 2 chr3 152837978 152838068 -6761715 + MLT1A LTR MaLR 13 103 -262 5 1751 234 312 0 0 chr3 152838107 152838171 -6761612 + MLT1A LTR MaLR 257 320 -45 5 1751 305 62 21 0 chr3 152838381 152838429 -6761354 + (CAAA)n Simple_repeat Simple_repeat 2 50 0 5 1751 1902 123 11 49 chr3 152838656 152839024 -6760759 - BGLII_B LTR ERVK -87 354 1 5 1751 330 222 171 27 chr3 152840719 152840830 -6758953 + RSINE1 SINE B4 1 127 -38 5 1751 279 282 71 33 chr3 152840854 152841037 -6758746 + RLTR15 LTR ERVK 154 343 -16 5 1751 207 0 0 0 chr3 152841109 152841132 -6758651 + (TGAA)n Simple_repeat Simple_repeat 2 24 0 5 1751 261 119 0 0 chr3 152841132 152841173 -6758610 + (CATA)n Simple_repeat Simple_repeat 2 43 0 5 1751 654 180 6 27 chr3 152841661 152841844 -6757939 + (TG)n Simple_repeat Simple_repeat 2 180 0 5 1751 1649 267 72 26 chr3 152841871 152842479 -6757304 - L1MB3 LINE L1 -75 6108 5473 5 1751 634 186 0 14 chr3 152842487 152842629 -6757154 + CT-rich Low_complexity Low_complexity 3 142 0 5 1751 488 260 38 51 chr3 152842650 152842808 -6756975 + B3A SINE B2 1 156 -42 5 1751 335 119 15 0 chr3 152842811 152842878 -6756905 + (CA)n Simple_repeat Simple_repeat 2 69 0 5 1751 363 264 49 52 chr3 152842891 152843061 -6756722 - L1MB3 LINE L1 -690 5481 5305 5 1751 276 266 43 26 chr3 152843218 152843334 -6756449 + PB1D9 SINE Alu 2 119 -1 5 1751 995 248 46 4 chr3 152843481 152843740 -6756043 - B4A SINE B4 -12 280 11 5 1751 256 284 0 0 chr3 152844412 152844479 -6755304 + RMER30 DNA MER1_type 11 77 -125 5 1751 387 0 0 0 chr3 152844482 152844525 -6755258 + (CA)n Simple_repeat Simple_repeat 1 43 0 5 1751 240 268 14 40 chr3 152845607 152845681 -6754102 + CT-rich Low_complexity Low_complexity 4 75 0 5 1751 274 225 134 24 chr3 152845725 152845807 -6753976 - L1MC1 LINE L1 -43 6290 6200 5 1751 307 239 127 76 chr3 152846065 152846156 -6753627 - B1F1 SINE Alu -2 147 48 5 1751 3237 56 3 0 chr3 152846156 152846548 -6753235 + MTA_Mm LTR MaLR 1 393 -3 5 1751 307 239 127 76 chr3 152846548 152846574 -6753209 - B1F1 SINE Alu -102 47 24 5 1751 2191 203 133 37 chr3 152846652 152847322 -6752461 + Lx9 LINE L1 6790 7523 -121 5 1751 201 276 16 60 chr3 152847446 152847631 -6752152 + GA-rich Low_complexity Low_complexity 3 179 0 5 1751 26 64 0 0 chr3 152847636 152847683 -6752100 + AT_rich Low_complexity Low_complexity 1 47 0 5 1751 233 298 89 45 chr3 152847707 152847886 -6751897 - L1MEg LINE L1 -5148 936 750 5 1751 272 347 121 24 chr3 152848228 152848435 -6751348 - L1MEg LINE L1 -5810 274 48 5 1751 1422 94 21 0 chr3 152848500 152848691 -6751092 - B2_Mm2 SINE B2 0 195 1 5 1751 468 0 0 0 chr3 152848761 152848813 -6750970 + (TG)n Simple_repeat Simple_repeat 1 52 0 5 1751 342 0 0 0 chr3 152848813 152848850 -6750933 + (GA)n Simple_repeat Simple_repeat 1 38 0 5 1751 349 287 18 27 chr3 152849125 152849236 -6750547 - B4A SINE B4 -181 111 2 5 1751 565 299 94 54 chr3 152850427 152850947 -6748836 - L1ME1 LINE L1 -96 6083 5543 5 1751 513 340 108 11 chr3 152851158 152851527 -6748256 + MLT2D LTR ERVL 6 410 -4 5 1751 366 23 0 0 chr3 152851567 152851610 -6748173 + (TG)n Simple_repeat Simple_repeat 1 43 0 5 1751 725 224 255 19 chr3 152853122 152853381 -6746402 - ORR1D2 LTR MaLR -7 363 44 5 1751 803 219 37 55 chr3 152853393 152853610 -6746173 - B3 SINE B2 0 216 4 5 1751 21 0 0 0 chr3 152853685 152853706 -6746077 + AT_rich Low_complexity Low_complexity 1 21 0 5 1751 273 234 16 0 chr3 152854623 152854687 -6745096 + CT-rich Low_complexity Low_complexity 1 65 0 5 1751 405 0 0 0 chr3 152854861 152854906 -6744877 + (TC)n Simple_repeat Simple_repeat 2 46 0 5 1751 254 346 173 16 chr3 152855124 152855309 -6744474 + MLT1F2 LTR MaLR 227 440 -120 5 1751 195 186 0 0 chr3 152856164 152856207 -6743576 + (CCTG)n Simple_repeat Simple_repeat 2 44 0 5 1751 1315 220 167 3 chr3 152856723 152857083 -6742700 - MTD LTR MaLR 0 419 1 5 1751 292 255 79 24 chr3 152859354 152859519 -6740264 + L1M5 LINE L1 5312 5485 -639 5 1751 207 119 71 0 chr3 152860751 152860793 -6738990 + A-rich Low_complexity Low_complexity 2 46 0 5 1751 542 302 136 30 chr3 152862403 152862741 -6737042 + MTEa LTR MaLR 3 376 -3 5 1751 250 222 39 65 chr3 152865504 152865581 -6734202 - Lx7 LINE L1 -770 6926 6852 5 1751 21 0 0 0 chr3 152865589 152865610 -6734173 + AT_rich Low_complexity Low_complexity 1 21 0 5 1751 381 194 15 37 chr3 152865991 152866125 -6733658 + GA-rich Low_complexity Low_complexity 3 133 0 5 1751 24 53 0 0 chr3 152867402 152867440 -6732343 + AT_rich Low_complexity Low_complexity 1 38 0 5 1751 411 238 0 0 chr3 152870136 152870287 -6729496 + (TG)n Simple_repeat Simple_repeat 2 152 0 5 1751 342 0 0 0 chr3 152870287 152870325 -6729458 + (GA)n Simple_repeat Simple_repeat 1 38 0 5 1751 280 308 0 9 chr3 152870328 152870433 -6729350 + (TG)n Simple_repeat Simple_repeat 1 104 0 5 1751 646 242 18 30 chr3 152870451 152870617 -6729166 - RSINE1 SINE B4 0 165 2 5 1751 305 269 0 0 chr3 152870635 152870702 -6729081 - ID4_ SINE ID -2 81 15 5 1751 540 0 0 0 chr3 152871567 152871627 -6728156 + (TTCC)n Simple_repeat Simple_repeat 1 60 0 5 1751 778 83 0 16 chr3 152871628 152871750 -6728033 + (TCTCC)n Simple_repeat Simple_repeat 4 123 0 5 1751 575 296 58 0 chr3 152871976 152872202 -6727581 - MER2 DNA MER2_type 0 345 107 5 1751 6963 31 1 0 chr3 152872482 152873287 -6726496 + L1Md_T LINE L1 5777 6582 0 5 1751 626 206 226 32 chr3 152874953 152875139 -6724644 - URR1A DNA MER1_type 0 226 5 5 1751 315 0 0 0 chr3 152876356 152876391 -6723392 + (CA)n Simple_repeat Simple_repeat 2 36 0 5 1751 500 255 6 75 chr3 152877938 152878112 -6721671 + RLTR14 LTR ERV1 1 162 -220 5 1751 1838 145 97 14 chr3 152878118 152878488 -6721295 - MTB_Mm LTR MaLR -6 401 1 5 1751 294 299 117 56 chr3 152878488 152878577 -6721206 + RLTR14 LTR ERV1 158 257 -125 5 1751 234 0 0 0 chr3 152878577 152878603 -6721180 + (TG)n Simple_repeat Simple_repeat 1 26 0 5 1751 294 299 117 56 chr3 152878603 152878725 -6721058 + RLTR14 LTR ERV1 258 381 -1 5 1751 453 310 129 52 chr3 152878725 152879128 -6720655 + RLTR14-int LTR ERV1 2 436 -4881 5 1751 189 0 0 0 chr3 152879128 152879149 -6720634 + (TTGG)n Simple_repeat Simple_repeat 2 22 0 5 1751 453 310 129 52 chr3 152879149 152879170 -6720613 + RLTR14-int LTR ERV1 437 459 -4858 5 1751 512 179 0 0 chr3 152879811 152879895 -6719888 + RLTR14-int LTR ERV1 833 916 -4401 5 1751 423 0 0 0 chr3 152881081 152881128 -6718655 + (TG)n Simple_repeat Simple_repeat 1 47 0 5 1751 780 291 145 29 chr3 152881547 152882031 -6717752 - Charlie21a DNA MER1_type -646 567 28 5 1751 363 326 15 36 chr3 152882113 152882250 -6717533 + RSINE1 SINE B4 7 140 -25 5 1751 282 164 0 0 chr3 152882276 152882331 -6717452 + (TA)n Simple_repeat Simple_repeat 2 56 0 5 1751 32 0 0 0 chr3 152882331 152882363 -6717420 + AT_rich Low_complexity Low_complexity 1 32 0 5 1751 601 326 23 34 chr3 152882398 152882747 -6717036 + ORR1E LTR MaLR 8 352 -7 5 1751 1654 42 0 0 chr3 152882813 152883006 -6716777 + B2_Mm1a SINE B2 1 193 0 5 1751 328 289 53 23 chr3 152884520 152884535 -6715248 + B1F SINE Alu 14 148 -1 5 1751 402 287 9 9 chr3 152884535 152884651 -6715132 + ID_B1 SINE B4 109 224 0 5 1751 1749 280 63 11 chr3 152885767 152886294 -6713489 - Lx5 LINE L1 -18 7032 6479 5 1751 877 312 25 3 chr3 152886291 152886577 -6713206 - Lx5 LINE L1 -687 6363 6072 5 1751 274 349 20 14 chr3 152886674 152886822 -6712961 + Tigger16b DNA Tigger 135 283 -54 5 1751 945 233 42 28 chr3 152888179 152888342 -6711441 + B4 SINE B4 51 218 -74 5 1751 786 50 0 0 chr3 152888342 152888441 -6711342 + (GGGA)n Simple_repeat Simple_repeat 4 102 0 5 1751 945 233 42 28 chr3 152888441 152888493 -6711290 + B4 SINE B4 219 269 -23 5 1751 279 54 0 0 chr3 152888493 152888530 -6711253 + (CA)n Simple_repeat Simple_repeat 2 38 0 5 1751 502 243 11 0 chr3 152889172 152889349 -6710434 + (TGGA)n Simple_repeat Simple_repeat 1 179 0 5 1751 595 256 19 12 chr3 152891464 152891626 -6708157 + RSINE1 SINE B4 3 165 0 5 1751 216 257 0 0 chr3 152891691 152891761 -6708022 + (CA)n Simple_repeat Simple_repeat 2 71 0 5 1751 586 279 109 74 chr3 152891870 152892237 -6707546 + RMER13A LTR ERVK 2 381 -479 5 1751 471 167 0 0 chr3 152892531 152892621 -6707162 + L1_Mur2 LINE L1 4563 4652 -1225 5 1751 282 29 0 0 chr3 152892689 152892724 -6707059 + (TCTCTG)n Simple_repeat Simple_repeat 2 36 0 5 1751 23 0 0 0 chr3 152893654 152893677 -6706106 + GC_rich Low_complexity Low_complexity 1 23 0 5 1751 1129 176 197 7 chr3 152894772 152895046 -6704737 + MTD LTR MaLR 92 417 -2 5 1751 603 292 106 27 chr3 152895579 152895940 -6703843 - L1M5 LINE L1 -660 5580 5197 5 1751 357 24 0 0 chr3 152896227 152896269 -6703514 + (CA)n Simple_repeat Simple_repeat 2 43 0 5 1751 384 40 0 0 chr3 152897043 152897093 -6702690 + (TC)n Simple_repeat Simple_repeat 1 50 0 5 1751 459 0 0 0 chr3 152897093 152897143 -6702640 + (CA)n Simple_repeat Simple_repeat 1 51 0 6 1751 1082 54 0 0 chr3 152897149 152897278 -6702505 - B1_Mus2 SINE Alu -17 130 2 6 1751 264 300 133 69 chr3 152898075 152898308 -6701475 - MLT1A0 LTR MaLR -2 363 116 6 1751 189 0 0 0 chr3 152898714 152898735 -6701048 + (T)n Simple_repeat Simple_repeat 1 21 0 6 1751 412 226 52 75 chr3 152900066 152900200 -6699583 + MTEa LTR MaLR 249 379 0 6 1751 340 292 87 58 chr3 152901252 152901451 -6698332 + MIR SINE MIR 36 245 -23 6 1751 558 98 0 0 chr3 152901817 152901899 -6697884 + (TG)n Simple_repeat Simple_repeat 2 83 0 6 1751 227 268 0 40 chr3 152901909 152901983 -6697800 - MLT1A1 LTR MaLR 0 408 338 6 1751 245 176 78 0 chr3 152902004 152902055 -6697728 - PB1D7 SINE Alu -1 119 65 6 1751 585 228 31 0 chr3 152902011 152902138 -6697645 - ID_B1 SINE B4 -8 216 86 6 1751 239 240 13 13 chr3 152903765 152903841 -6695942 + (CA)n Simple_repeat Simple_repeat 1 76 0 6 1751 612 190 44 0 chr3 152904760 152904897 -6694886 + RSINE1 SINE B4 2 144 -21 6 1751 435 275 218 36 chr3 152905890 152906157 -6693626 + MTEb LTR MaLR 55 370 -9 6 1751 489 269 34 113 chr3 152906647 152906857 -6692926 + ORR1E LTR MaLR 2 181 -189 6 1751 425 89 0 15 chr3 152906897 152906965 -6692818 + (TCCA)n Simple_repeat Simple_repeat 4 70 0 6 1751 467 285 8 0 chr3 152907037 152907160 -6692623 + ORR1E LTR MaLR 254 377 -2 6 1751 303 28 0 0 chr3 152907729 152907765 -6692018 + (CA)n Simple_repeat Simple_repeat 1 36 0 6 1751 642 209 204 1 chr3 152907768 152907961 -6691822 + MTD LTR MaLR 189 405 -14 6 1751 621 204 0 0 chr3 152908199 152908331 -6691452 + (TG)n Simple_repeat Simple_repeat 2 133 0 6 1751 284 321 0 0 chr3 152908980 152909061 -6690722 - ID4_ SINE ID 0 83 3 6 1751 713 302 9 0 chr3 152909408 152909620 -6690163 - ID_B1 SINE B4 -9 215 2 6 1751 536 246 66 66 chr3 152910332 152910515 -6689268 + B3A SINE B2 1 183 -15 6 1751 220 294 29 0 chr3 152911309 152911377 -6688406 + GA-rich Low_complexity Low_complexity 3 72 0 6 1751 358 213 0 0 chr3 152914048 152914123 -6685660 + ID4_ SINE ID 8 82 -1 6 1751 387 60 0 0 chr3 152914461 152914511 -6685272 + (TTCA)n Simple_repeat Simple_repeat 1 50 0 6 1751 410 303 80 0 chr3 152914618 152914806 -6684977 + MIR SINE MIR 55 257 -5 6 1751 412 291 294 34 chr3 152916400 152916701 -6683082 + MTE2a LTR MaLR 1 379 0 6 1751 329 311 100 68 chr3 152917027 152917407 -6682376 + Charlie7 DNA MER1_type 332 723 -1889 6 1751 2271 93 15 30 chr3 152918592 152918924 -6680859 + IAPLTR2b LTR ERVK 1 327 0 6 1751 810 132 44 0 chr3 152919192 152919328 -6680455 + B1_Mur4 SINE Alu 9 150 0 6 1751 243 0 0 0 chr3 152919328 152919355 -6680428 + (A)n Simple_repeat Simple_repeat 1 27 0 6 1751 245 29 0 29 chr3 152919359 152919394 -6680389 + (TGGA)n Simple_repeat Simple_repeat 3 36 0 6 1751 1188 260 55 35 chr3 152919745 152920179 -6679604 + RMER5 LTR ERV1 68 510 -24 6 1751 378 0 0 0 chr3 152921210 152921252 -6678531 + (TC)n Simple_repeat Simple_repeat 1 42 0 6 1751 189 0 0 0 chr3 152921252 152921272 -6678511 + (CA)n Simple_repeat Simple_repeat 1 21 0 6 1751 841 242 10 20 chr3 152922433 152922635 -6677148 + B3 SINE B2 4 203 -13 6 1751 230 196 20 0 chr3 152922635 152922686 -6677097 + (CATA)n Simple_repeat Simple_repeat 3 54 0 6 1751 180 0 0 0 chr3 152924422 152924442 -6675341 + (CCCCCA)n Simple_repeat Simple_repeat 3 22 0 6 1751 527 253 281 58 chr3 152925586 152925896 -6673887 + MTEa LTR MaLR 1 379 0 6 1751 184 220 0 78 chr3 152925920 152925984 -6673799 - L3 LINE CR1 -3543 946 888 6 1751 495 157 51 25 chr3 152926111 152926553 -6673230 + (TG)n Simple_repeat Simple_repeat 1 453 0 6 1751 197 288 47 59 chr3 152927340 152927425 -6672358 + L3 LINE CR1 4317 4400 -89 6 1751 610 248 64 25 chr3 152928141 152928298 -6671485 + RSINE1 SINE B4 3 165 0 6 1751 203 203 14 0 chr3 152928305 152928374 -6671409 + (CA)n Simple_repeat Simple_repeat 2 71 0 6 1751 282 159 0 47 chr3 152929979 152930065 -6669718 + GA-rich Low_complexity Low_complexity 1 82 0 6 1751 513 0 0 0 chr3 152930156 152930213 -6669570 + (TC)n Simple_repeat Simple_repeat 1 57 0 6 1751 1375 213 226 56 chr3 152931755 152932277 -6667506 + RMER19C LTR ERVK 1 611 0 6 1751 24 24 0 24 chr3 152932442 152932458 -6667325 + AT_rich Low_complexity Low_complexity 1 16 0 6 1751 1894 104 7 14 chr3 152932458 152932742 -6667041 + L1_Mus3 LINE L1 6357 6638 0 6 1751 24 24 0 24 chr3 152932742 152932767 -6667016 + AT_rich Low_complexity Low_complexity 1 25 0 6 1751 275 282 108 27 chr3 152935647 152936047 -6663736 + L1_Mur3 LINE L1 1218 1637 -4249 6 1751 210 71 0 0 chr3 152936254 152936282 -6663501 + (GGA)n Simple_repeat Simple_repeat 3 30 0 6 1751 300 278 194 44 chr3 152936597 152936737 -6663046 - B3A SINE B2 -30 186 31 6 1751 396 92 0 116 chr3 152936737 152936823 -6662960 - L1Md_A LINE L1 -1 6581 6506 6 1751 300 271 209 37 chr3 152936823 152936851 -6662932 - B3A SINE B2 -168 30 4 6 1751 234 62 0 0 chr3 152936871 152936903 -6662880 + (CAAAA)n Simple_repeat Simple_repeat 5 36 0 6 1751 449 314 70 0 chr3 152936911 152937116 -6662667 + L1_Mur3 LINE L1 2208 2425 -3422 6 1751 250 198 0 20 chr3 152937129 152937188 -6662595 + B4A SINE B4 1 58 -107 6 1751 563 234 58 92 chr3 152937190 152937397 -6662386 - MTE2a LTR MaLR -179 200 1 6 1751 1812 307 94 45 chr3 152937434 152938821 -6660962 + L1M2 LINE L1 2505 3959 -2184 6 1751 22 0 0 0 chr3 152940346 152940368 -6659415 + AT_rich Low_complexity Low_complexity 1 22 0 6 1751 228 67 0 0 chr3 152941682 152941712 -6658071 + (GGA)n Simple_repeat Simple_repeat 2 31 0 6 1751 664 212 31 6 chr3 152942852 152943029 -6656754 - B3 SINE B2 -2 191 2 6 1751 500 0 0 16 chr3 152943268 152943329 -6656454 + (TTA)n Simple_repeat Simple_repeat 3 62 0 6 1751 181 75 50 0 chr3 152943526 152943566 -6656217 + (CAAAAA)n Simple_repeat Simple_repeat 2 43 0 6 1751 1049 258 99 12 chr3 152943816 152944149 -6655634 + ORR1D2 LTR MaLR 1 362 -8 6 1751 842 220 26 20 chr3 152944741 152944936 -6654847 + B3A SINE B2 1 196 -2 6 1751 287 250 35 23 chr3 152945909 152945995 -6653788 - MTD LTR MaLR -332 87 1 6 1751 531 300 95 17 chr3 152946273 152946514 -6653269 - L1M4 LINE L1 -426 5752 5493 6 1751 377 342 91 24 chr3 152946690 152947020 -6652763 - L1M4 LINE L1 -904 5242 4891 6 1751 502 278 45 0 chr3 152947457 152947590 -6652193 + ID_B1 SINE B4 84 222 -2 6 1751 270 345 9 9 chr3 152949343 152949454 -6650329 - RSINE1 SINE B4 -25 140 30 6 1751 219 69 0 0 chr3 152949823 152949852 -6649931 + (T)n Simple_repeat Simple_repeat 1 29 0 6 1751 604 171 17 8 chr3 152949852 152949970 -6649813 - PB1D9 SINE Alu 0 120 2 6 1751 353 322 36 94 chr3 152950304 152950667 -6649116 + L1MA5 LINE L1 4124 4465 -1678 6 1751 425 261 212 62 chr3 152950683 152950924 -6648859 - MTD LTR MaLR -14 405 129 6 1751 249 33 0 0 chr3 152950998 152951028 -6648755 + (TCC)n Simple_repeat Simple_repeat 3 32 0 6 1751 977 229 222 103 chr3 152951103 152951554 -6648229 + L1MA5 LINE L1 4490 4967 -1176 6 1751 5195 103 142 14 chr3 152951554 152952402 -6647381 + RMER17B LTR ERVK 3 958 0 6 1751 977 229 211 99 chr3 152952402 152952790 -6646993 + L1MA5 LINE L1 4968 5429 -871 6 1751 219 139 0 0 chr3 152952825 152952861 -6646922 + (TG)n Simple_repeat Simple_repeat 2 37 0 6 1751 218 32 32 0 chr3 152952879 152952910 -6646873 + (TA)n Simple_repeat Simple_repeat 2 33 0 6 1751 511 251 31 2 chr3 152953169 152953341 -6646442 + L1MA5 LINE L1 6068 6250 -53 6 1751 310 284 42 30 chr3 152953346 152953513 -6646270 + L1M5 LINE L1 5132 5300 -846 6 1751 204 97 0 0 chr3 152953741 152953772 -6646011 + (TTTTA)n Simple_repeat Simple_repeat 5 35 0 6 1751 281 317 87 31 chr3 152953838 152953965 -6645818 - B1F1 SINE Alu -10 139 6 6 1751 254 347 62 14 chr3 152956642 152956788 -6642995 + B4A SINE B4 139 291 -1 6 1751 225 159 0 0 chr3 152956789 152956833 -6642950 + (CA)n Simple_repeat Simple_repeat 1 44 0 6 1751 264 333 139 7 chr3 152958024 152958175 -6641608 + L2 LINE L2 2744 2914 -505 6 1751 388 245 7 13 chr3 152958317 152958466 -6641317 + (CATA)n Simple_repeat Simple_repeat 4 151 0 6 1751 419 268 0 11 chr3 152958514 152958688 -6641095 + (CATA)n Simple_repeat Simple_repeat 1 172 0 6 1751 198 0 0 0 chr3 152960192 152960214 -6639569 + (TG)n Simple_repeat Simple_repeat 2 23 0 6 1751 941 254 181 12 chr3 152960541 152960884 -6638899 + MTC LTR MaLR 3 403 -18 6 1752 25 31 0 0 chr3 152963258 152963290 -6636493 + AT_rich Low_complexity Low_complexity 1 32 0 6 1752 222 118 0 0 chr3 152965140 152965174 -6634609 + (CA)n Simple_repeat Simple_repeat 2 35 0 6 1752 269 291 29 19 chr3 152966144 152966249 -6633534 + MLT1A1 LTR MaLR 291 396 -12 6 1752 923 221 41 36 chr3 152967408 152967629 -6632154 + ID_B1 SINE B4 2 223 -1 6 1752 204 200 0 0 chr3 152967642 152967687 -6632096 + (TG)n Simple_repeat Simple_repeat 1 45 0 6 1752 330 132 0 0 chr3 152967691 152967744 -6632039 + (TA)n Simple_repeat Simple_repeat 2 54 0 6 1752 971 297 31 11 chr3 152967744 152968030 -6631753 - ORR1E LTR MaLR -64 295 4 6 1752 1119 181 103 15 chr3 152969806 152970069 -6629714 + Lx9 LINE L1 7172 7457 -187 6 1752 423 0 0 0 chr3 152970069 152970116 -6629667 + (TG)n Simple_repeat Simple_repeat 2 48 0 6 1752 596 216 0 0 chr3 152970116 152970241 -6629542 + Lx9 LINE L1 7517 7641 -3 6 1752 180 362 32 0 chr3 152970902 152970996 -6628787 - MIRc SINE MIR -5 263 167 6 1752 224 302 176 27 chr3 152971632 152971819 -6627964 + MIRb SINE MIR 33 247 -21 6 1752 555 43 0 0 chr3 152972351 152972421 -6627362 + (TTTC)n Simple_repeat Simple_repeat 3 72 0 6 1752 261 119 0 0 chr3 152973113 152973155 -6626628 + (TTTC)n Simple_repeat Simple_repeat 3 44 0 6 1752 536 268 7 34 chr3 152974239 152974386 -6625397 - B1F SINE Alu -3 146 4 6 1752 22 0 0 0 chr3 152975354 152975376 -6624407 + AT_rich Low_complexity Low_complexity 1 22 0 6 1752 266 278 69 39 chr3 152975511 152975651 -6624132 + PB1D9 SINE Alu 1 147 -2 7 1752 329 0 24 0 chr3 152976000 152976041 -6623742 + (CAGA)n Simple_repeat Simple_repeat 2 43 0 7 1752 211 217 22 0 chr3 152977572 152977618 -6622165 + B4A SINE B4 1 47 -245 7 1752 270 0 0 0 chr3 152977862 152977892 -6621891 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 7 1752 1013 148 0 0 chr3 152977892 152978054 -6621729 - B2_Mm2 SINE B2 -33 162 1 7 1752 225 178 0 0 chr3 152978508 152978553 -6621230 + (TG)n Simple_repeat Simple_repeat 1 45 0 7 1752 271 291 9 37 chr3 152978900 152979007 -6620776 + B3A SINE B2 8 111 -87 7 1752 570 341 56 3 chr3 152979582 152979901 -6619882 - MER2 DNA MER2_type -3 342 7 7 1752 565 225 31 87 chr3 152980051 152980246 -6619537 + RLTR18 LTR ERVK 9 192 -424 7 1752 398 312 56 52 chr3 152980401 152980614 -6619169 + RLTR18 LTR ERVK 403 616 0 7 1752 817 303 114 6 chr3 152981211 152981536 -6618247 + MTEa LTR MaLR 18 377 -2 7 1752 769 262 60 23 chr3 152982504 152982769 -6617014 + B4 SINE B4 4 278 -14 7 1752 204 40 0 0 chr3 152982847 152982872 -6616911 + (TC)n Simple_repeat Simple_repeat 1 25 0 7 1752 288 0 0 0 chr3 152982874 152982906 -6616877 + (CA)n Simple_repeat Simple_repeat 1 32 0 7 1752 21 36 0 0 chr3 152982979 152983007 -6616776 + AT_rich Low_complexity Low_complexity 1 28 0 7 1752 556 301 112 17 chr3 152983528 152983768 -6616015 - B4A SINE B4 0 292 30 7 1752 1224 225 89 24 chr3 152984992 152985329 -6614454 + MTEb LTR MaLR 1 359 -20 7 1752 704 174 0 3 chr3 152985467 152985781 -6614002 + (TG)n Simple_repeat Simple_repeat 1 312 0 7 1752 518 275 58 37 chr3 152986900 152987089 -6612694 - B3A SINE B2 -5 193 1 7 1752 216 211 0 17 chr3 152987751 152987809 -6611974 + (TCTG)n Simple_repeat Simple_repeat 2 58 0 7 1752 315 275 108 0 chr3 152987950 152988070 -6611713 - B1F1 SINE Alu -5 144 12 7 1752 280 333 160 7 chr3 152988205 152988474 -6611309 + L1MB7 LINE L1 5811 6120 -64 7 1752 511 206 19 9 chr3 152989192 152989300 -6610483 - PB1D9 SINE Alu -1 119 11 7 1752 757 257 14 9 chr3 152989904 152990120 -6609663 - Lx9 LINE L1 -207 7437 7221 7 1752 335 244 53 64 chr3 152990126 152990154 -6609629 + Lx9 LINE L1 7446 7474 -170 7 1752 225 0 0 0 chr3 152990154 152990179 -6609604 + (TG)n Simple_repeat Simple_repeat 1 25 0 7 1752 335 244 53 64 chr3 152990179 152990338 -6609445 + Lx9 LINE L1 7475 7631 -13 7 1752 474 255 92 0 chr3 152990684 152990825 -6608958 + ID_B1 SINE B4 64 217 -7 7 1752 665 167 13 22 chr3 152992544 152992773 -6607010 + CT-rich Low_complexity Low_complexity 1 226 0 7 1752 436 168 0 39 chr3 152992788 152992918 -6606865 + CT-rich Low_complexity Low_complexity 1 125 0 7 1752 415 333 79 22 chr3 152993148 152993415 -6606368 + Kanga2_a DNA Tc2 1 282 -606 7 1752 422 264 157 80 chr3 152993530 152993905 -6605878 + MTD LTR MaLR 1 404 -15 7 1752 7497 74 0 0 chr3 152993920 152994909 -6604874 + L1_Mm LINE L1 2284 3272 -2611 7 1752 2642 221 86 35 chr3 152995148 152995870 -6603913 - Lx9 LINE L1 -7 7637 6879 7 1752 272 275 64 0 chr3 152995884 152995993 -6603790 + Kanga2_a DNA Tc2 679 794 -94 7 1752 357 162 0 0 chr3 152998535 152998603 -6601180 + (CAT)n Simple_repeat Simple_repeat 3 70 0 7 1752 2140 158 37 10 chr3 152998740 152999142 -6600641 - MTC LTR MaLR -8 413 1 7 1752 4146 26 0 0 chr3 152999537 153000000 -6599783 + L1Md_F2 LINE L1 5985 6447 -135 7 1752 931 41 8 0 chr3 153000000 153000123 -6599660 + L1Md_F2 LINE L1 6448 6571 -11 1 1752 475 281 128 0 chr3 153000174 153000338 -6599445 - MTE2b LTR MaLR -20 359 175 2 1752 266 302 11 11 chr3 153000362 153000449 -6599334 - MTE2b LTR MaLR -292 87 1 2 1752 948 268 0 2 chr3 153000787 153001014 -6598769 + RMER1A Other Other 1 443 -587 3 1752 2733 244 248 5 chr3 153001016 153001843 -6597940 + RMER1A Other Other 1 1028 -2 4 1752 295 336 40 40 chr3 153002790 153002939 -6596844 + ORR1E LTR MaLR 1 149 -210 5 1752 22 0 0 0 chr3 153003325 153003347 -6596436 + AT_rich Low_complexity Low_complexity 1 22 0 6 1752 258 32 0 0 chr3 153003397 153003428 -6596355 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 7 1752 275 161 0 18 chr3 153003616 153003673 -6596110 + G-rich Low_complexity Low_complexity 3 58 0 8 1752 376 376 123 18 chr3 153003793 153004134 -6595649 + LTR78 LTR ERV1 8 384 -920 9 1752 1006 267 125 26 chr3 153004192 153004568 -6595215 + MTD LTR MaLR 12 399 -20 1 1752 423 338 151 25 chr3 153004660 153004939 -6594844 + LTR78 LTR ERV1 637 950 -354 9 1752 493 243 0 173 chr3 153005169 153005348 -6594435 - B1F SINE Alu 0 149 2 1 1752 482 286 79 23 chr3 153006242 153006457 -6593326 + LTR78 LTR ERV1 1016 1242 -62 9 1752 281 341 73 17 chr3 153007304 153007483 -6592300 + MIRb SINE MIR 72 260 -8 1 1752 371 238 419 15 chr3 153009244 153009447 -6590336 - B4A SINE B4 0 292 8 1 1752 22 0 0 0 chr3 153010141 153010163 -6589620 + AT_rich Low_complexity Low_complexity 1 22 0 1 1752 623 295 26 10 chr3 153010496 153010688 -6589095 + B3A SINE B2 3 197 -1 1 1752 769 229 63 12 chr3 153011061 153011316 -6588467 + ORR1D1 LTR MaLR 1 369 -1 1 1752 1135 35 28 21 chr3 153012778 153012923 -6586860 - B1_Mm SINE Alu 0 147 2 1 1752 244 349 101 45 chr3 153013546 153013744 -6586039 + MER58C DNA MER1_type 5 213 -2 1 1752 561 324 46 14 chr3 153013943 153014162 -6585621 - Lx8 LINE L1 -181 7292 7067 1 1752 258 32 0 0 chr3 153014258 153014289 -6585494 + (CAAG)n Simple_repeat Simple_repeat 2 32 0 2 1752 261 0 0 0 chr3 153015579 153015608 -6584175 + (CCA)n Simple_repeat Simple_repeat 3 31 0 2 1752 195 306 0 0 chr3 153018362 153018411 -6581372 - MIRm SINE MIR -16 260 212 2 1752 245 294 0 0 chr3 153018795 153018846 -6580937 + polypyrimidine Low_complexity Low_complexity 3 53 0 2 1752 701 264 135 8 chr3 153019156 153019400 -6580383 - ORR1E LTR MaLR -84 275 1 2 1752 423 0 0 0 chr3 153019559 153019606 -6580177 + (TTG)n Simple_repeat Simple_repeat 2 48 0 2 1752 254 167 0 45 chr3 153019877 153019965 -6579818 + GA-rich Low_complexity Low_complexity 5 88 0 2 1752 207 69 0 0 chr3 153021277 153021306 -6578477 + (CAA)n Simple_repeat Simple_repeat 2 30 0 2 1752 2282 98 3 58 chr3 153022814 153023160 -6576623 - ORR1A2 LTR MaLR 0 327 1 2 1752 21 0 0 0 chr3 153023332 153023353 -6576430 + AT_rich Low_complexity Low_complexity 1 21 0 2 1752 709 238 0 14 chr3 153023384 153023529 -6576254 + B1_Mur2 SINE Alu 2 144 -5 3 1752 271 342 66 45 chr3 153023611 153023848 -6575935 + MIRb SINE MIR 15 250 -18 3 1752 205 184 26 0 chr3 153023909 153023947 -6575836 + CT-rich Low_complexity Low_complexity 3 41 0 3 1752 692 262 160 0 chr3 153024787 153025024 -6574759 + B4 SINE B4 2 276 -16 3 1752 228 35 0 0 chr3 153025075 153025104 -6574679 + (CA)n Simple_repeat Simple_repeat 2 30 0 3 1752 292 303 35 64 chr3 153025354 153025495 -6574288 - LTR33 LTR ERVL -373 142 6 3 1752 21 0 0 0 chr3 153026078 153026099 -6573684 + AT_rich Low_complexity Low_complexity 1 21 0 3 1752 1980 213 74 98 chr3 153026764 153027772 -6572011 - RMER13B LTR ERVK 0 908 1 3 1752 701 328 72 94 chr3 153029583 153030222 -6569561 + L1MB5 LINE L1 5535 6159 -15 3 1752 306 0 0 0 chr3 153030237 153030271 -6569512 + (CA)n Simple_repeat Simple_repeat 1 34 0 3 1752 630 39 0 0 chr3 153031985 153032062 -6567721 + (TAGA)n Simple_repeat Simple_repeat 2 78 0 4 1752 508 304 91 79 chr3 153032067 153032396 -6567387 + HAL1 LINE L1 1137 1469 -1038 4 1752 3914 93 2 5 chr3 153032398 153032949 -6566834 - L1_Mus2 LINE L1 -499 5384 4836 4 1752 6035 52 0 0 chr3 153032947 153033884 -6565899 + L1_Mus2 LINE L1 5365 6301 -265 4 1752 271 284 135 7 chr3 153033994 153034218 -6565565 + L1MC1 LINE L1 3938 4199 -1947 4 1752 436 282 120 66 chr3 153034218 153034476 -6565307 + B4A SINE B4 1 272 -20 4 1752 363 284 112 73 chr3 153034579 153034781 -6565002 + L1MC1 LINE L1 4183 4397 -1749 4 1752 4343 47 2 8 chr3 153034781 153035296 -6564487 - LTRIS3 LTR ERV1 0 512 1 4 1752 363 284 112 73 chr3 153035296 153035325 -6564458 + L1MC1 LINE L1 4398 4423 -1723 4 1752 1237 232 108 15 chr3 153035342 153035675 -6564108 - ORR1D2 LTR MaLR -6 364 1 4 1752 4670 157 51 2 chr3 153035675 153036498 -6563285 - L1_Mur2 LINE L1 -8 5869 5007 4 1752 3171 206 22 8 chr3 153036493 153037090 -6562693 + Lx5 LINE L1 6224 6828 -222 4 1752 840 188 0 12 chr3 153037093 153037255 -6562528 - L1_Mur2 LINE L1 -711 5166 5007 4 1752 334 188 15 15 chr3 153037250 153037315 -6562468 + Lx5 LINE L1 6224 6288 -762 5 1752 393 207 0 0 chr3 153037315 153037402 -6562381 + T-rich Low_complexity Low_complexity 1 87 0 5 1752 1060 128 0 0 chr3 153037404 153037552 -6562231 - B1_Mus1 SINE Alu 0 148 1 5 1752 647 228 51 7 chr3 153037553 153037690 -6562093 + Lx5 LINE L1 6273 6415 -635 5 1752 818 259 5 47 chr3 153037674 153037885 -6561898 + Lx5 LINE L1 6837 7038 -12 5 1752 578 161 0 9 chr3 153037908 153038021 -6561762 + GA-rich Low_complexity Low_complexity 4 115 0 5 1752 414 218 0 25 chr3 153038166 153038246 -6561537 - ID4 SINE ID -3 80 3 5 1752 570 292 138 80 chr3 153038330 153039004 -6560779 + L1MC1 LINE L1 4738 5453 -891 4 1752 562 306 141 42 chr3 153039241 153039745 -6560038 + L1MC1 LINE L1 5651 6204 -129 4 1752 1176 260 35 104 chr3 153039783 153040187 -6559596 - MTE2a LTR MaLR -2 377 2 5 1752 316 292 175 18 chr3 153040400 153040571 -6559212 + HAL1 LINE L1 2115 2312 -195 5 1752 273 232 0 0 chr3 153041000 153041069 -6558714 + CT-rich Low_complexity Low_complexity 1 69 0 5 1752 381 275 68 61 chr3 153041111 153041258 -6558525 - B4 SINE B4 -143 149 2 5 1752 351 0 0 0 chr3 153041337 153041376 -6558407 + (TC)n Simple_repeat Simple_repeat 1 39 0 5 1752 195 42 0 0 chr3 153041376 153041399 -6558384 + (CA)n Simple_repeat Simple_repeat 1 24 0 6 1752 555 135 0 0 chr3 153042488 153042584 -6557199 + (TG)n Simple_repeat Simple_repeat 2 97 0 6 1752 449 302 74 69 chr3 153042606 153042823 -6556960 - B4A SINE B4 -6 286 69 6 1752 483 238 10 0 chr3 153044118 153044219 -6555564 + B3A SINE B2 1 102 -96 6 1752 1667 122 56 26 chr3 153044859 153045128 -6554655 - ORR1C1 LTR MaLR -99 279 3 6 1752 461 205 6 41 chr3 153045686 153046014 -6553769 + (CA)n Simple_repeat Simple_repeat 1 316 0 6 1752 401 290 12 28 chr3 153046073 153046206 -6553577 - ID_B1 SINE B4 -12 212 85 6 1752 1358 80 11 0 chr3 153047879 153048055 -6551728 + B2_Mm1t SINE B2 2 179 -14 6 1752 413 147 338 53 chr3 153048073 153048224 -6551559 + B2_Mm2 SINE B2 1 194 -1 6 1752 22 0 0 0 chr3 153048236 153048258 -6551525 + AT_rich Low_complexity Low_complexity 1 22 0 6 1752 260 320 0 0 chr3 153049228 153049303 -6550480 + ID4 SINE ID 2 76 -7 7 1752 301 229 21 0 chr3 153049315 153049464 -6550319 + GA-rich Low_complexity Low_complexity 1 152 0 7 1752 513 115 21 10 chr3 153051212 153051227 -6548556 + (GA)n Simple_repeat Simple_repeat 2 16 0 7 1752 1200 55 0 7 chr3 153051227 153051375 -6548408 + B1_Mm SINE Alu 1 147 0 7 1752 513 115 21 10 chr3 153051375 153051456 -6548327 + (GA)n Simple_repeat Simple_repeat 1 83 0 7 1752 306 295 11 64 chr3 153051463 153051557 -6548226 - PB1D7 SINE Alu -13 107 19 7 1752 445 219 133 52 chr3 153052799 153052972 -6546811 + MTEa LTR MaLR 182 368 -11 7 1752 535 261 67 8 chr3 153052987 153053208 -6546575 + L1MC1 LINE L1 5713 5954 -1831 7 1752 388 302 48 57 chr3 153053298 153053526 -6546257 + L1MC1 LINE L1 6074 6299 -34 7 1752 3320 58 0 0 chr3 153053679 153054075 -6545708 + MTA_Mm LTR MaLR 1 396 0 7 1752 378 0 0 0 chr3 153054294 153054336 -6545447 + (TTTA)n Simple_repeat Simple_repeat 2 43 0 7 1752 2816 78 65 10 chr3 153054634 153055033 -6544750 + BGLII LTR ERVK 1 421 0 8 1752 1544 63 5 0 chr3 153055127 153055318 -6544465 + B2_Mm1t SINE B2 2 193 0 8 1752 412 21 0 0 chr3 153055337 153055384 -6544399 + L1_Mus2 LINE L1 6286 6332 -234 8 1752 3518 116 34 35 chr3 153056450 153057015 -6542768 + LTRIS2 LTR ERV1 1 564 0 8 1752 611 336 85 33 chr3 153057234 153057539 -6542244 - ORR1E LTR MaLR -11 348 28 8 1752 1050 245 188 6 chr3 153057676 153057724 -6542059 - MTD LTR MaLR -35 384 329 8 1752 492 18 0 0 chr3 153057724 153057781 -6542002 + (CA)n Simple_repeat Simple_repeat 1 57 0 8 1752 1050 245 188 6 chr3 153057781 153058056 -6541727 - MTD LTR MaLR -91 328 2 8 1752 519 95 0 0 chr3 153058211 153058285 -6541498 + (TA)n Simple_repeat Simple_repeat 2 75 0 8 1752 234 304 0 28 chr3 153058487 153058558 -6541225 + MIR3 SINE MIR 88 156 -52 8 1752 435 388 62 11 chr3 153058614 153058890 -6540893 + Charlie19a DNA Charlie 54 343 -43 8 1752 308 250 0 64 chr3 153059223 153059317 -6540466 - L2a LINE L2 -260 3166 3079 9 1752 240 35 0 0 chr3 153059554 153059583 -6540200 + (T)n Simple_repeat Simple_repeat 1 29 0 9 1752 3814 2 0 0 chr3 153060104 153060518 -6539265 + L1Md_T LINE L1 6169 6582 0 9 1752 204 40 0 0 chr3 153060537 153060562 -6539221 + (A)n Simple_repeat Simple_repeat 1 25 0 9 1752 188 182 0 0 chr3 153061292 153061325 -6538458 - L2a LINE L2 -16 3410 3378 9 1752 1188 243 98 67 chr3 153061685 153061733 -6538050 + MTE2a LTR MaLR 10 57 -322 9 1752 336 24 0 0 chr3 153061733 153061774 -6538009 + (TG)n Simple_repeat Simple_repeat 2 42 0 9 1752 1188 243 98 67 chr3 153061774 153062082 -6537701 + MTE2a LTR MaLR 58 377 -2 9 1752 213 382 60 38 chr3 153063316 153063501 -6536282 + MER5A DNA MER1_type 1 189 0 9 1752 261 336 65 32 chr3 153063824 153063978 -6535805 - L2a LINE L2 -2 3424 3266 9 1752 477 147 0 0 chr3 153064685 153064780 -6535003 + (TG)n Simple_repeat Simple_repeat 2 96 0 9 1752 382 259 0 0 chr3 153065293 153065374 -6534409 - ID4_ SINE ID -1 82 2 1 1752 251 314 86 93 chr3 153065429 153065707 -6534076 - L2c LINE L2 -4 3383 3108 1 1752 260 390 0 0 chr3 153066188 153066288 -6533495 + MER5A DNA MER1_type 8 107 -82 1 1752 215 31 31 0 chr3 153066547 153066579 -6533204 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 1 1752 697 229 45 55 chr3 153066601 153066800 -6532983 - B3A SINE B2 0 198 2 1 1752 209 216 20 0 chr3 153067146 153067197 -6532586 + CT-rich Low_complexity Low_complexity 1 52 0 1 1752 228 111 0 0 chr3 153067201 153067237 -6532546 + (TG)n Simple_repeat Simple_repeat 1 36 0 1 1752 226 0 59 0 chr3 153067237 153067271 -6532512 + (GA)n Simple_repeat Simple_repeat 2 37 0 1 1752 989 75 97 0 chr3 153067341 153067475 -6532308 - B1_Mus2 SINE Alu 0 147 1 1 1752 616 234 13 33 chr3 153069425 153069575 -6530208 - RSINE1 SINE B4 -16 149 3 1 1752 273 310 0 14 chr3 153069753 153069825 -6529958 + ID4 SINE ID 2 72 -11 1 1752 252 329 14 0 chr3 153071763 153071836 -6527947 + B4A SINE B4 143 216 -76 1 1752 183 184 0 0 chr3 153072103 153072141 -6527642 + GA-rich Low_complexity Low_complexity 2 39 0 1 1752 192 152 0 0 chr3 153072740 153072773 -6527010 + GA-rich Low_complexity Low_complexity 2 34 0 1 1752 2145 31 8 8 chr3 153073439 153073701 -6526082 + L1Md_F3 LINE L1 6323 6584 0 1 1752 1159 130 43 11 chr3 153073737 153073923 -6525860 - B2_Mm2 SINE B2 -3 192 1 1 1752 557 319 29 77 chr3 153075610 153075817 -6523966 - B3A SINE B2 -1 197 1 1 1752 240 309 138 0 chr3 153076238 153076361 -6523422 - Lx8 LINE L1 -121 7352 7213 1 1752 182 335 73 79 chr3 153076731 153076896 -6522887 - L2a LINE L2 -25 3401 3238 1 1752 574 207 0 11 chr3 153076941 153077122 -6522661 + (TG)n Simple_repeat Simple_repeat 1 179 0 1 1752 329 176 189 0 chr3 153077232 153077306 -6522477 - RMER15 LTR ERVL -151 424 337 1 1752 260 363 106 22 chr3 153077440 153077809 -6521974 - L2a LINE L2 -565 2854 2455 1 1752 228 293 79 43 chr3 153078103 153078267 -6521516 - L1M5 LINE L1 -267 5857 5688 1 1752 243 273 12 61 chr3 153078454 153078536 -6521247 + B3A SINE B2 2 79 -119 1 1752 543 285 43 43 chr3 153078506 153078693 -6521090 + B3 SINE B2 28 214 -2 1 1752 498 306 15 0 chr3 153078724 153078858 -6520925 + ID_B1 SINE B4 85 220 -4 1 1752 182 241 86 0 chr3 153078941 153078999 -6520784 + MIR SINE MIR 16 78 -130 1 1752 202 245 66 75 chr3 153079356 153079462 -6520321 - L3 LINE CR1 -3539 950 846 1 1752 502 303 97 0 chr3 153080465 153080620 -6519163 + B4 SINE B4 24 193 -99 1 1752 282 87 0 0 chr3 153080630 153080676 -6519107 + (TCTG)n Simple_repeat Simple_repeat 2 47 0 1 1752 339 25 0 0 chr3 153080678 153080718 -6519065 + (CA)n Simple_repeat Simple_repeat 1 40 0 1 1752 647 231 0 15 chr3 153081380 153081512 -6518271 - B1F2 SINE Alu -2 147 18 1 1752 499 252 48 16 chr3 153081550 153081675 -6518108 - B1F2 SINE Alu 0 149 21 1 1752 582 288 66 52 chr3 153081959 153082245 -6517538 + B4 SINE B4 1 290 -2 1 1752 513 0 0 0 chr3 153082320 153082377 -6517406 + (TC)n Simple_repeat Simple_repeat 1 57 0 1 1752 360 0 0 0 chr3 153082377 153082416 -6517367 + (CA)n Simple_repeat Simple_repeat 1 40 0 1 1752 359 298 0 32 chr3 153083245 153083370 -6516413 + GA-rich Low_complexity Low_complexity 1 121 0 1 1752 702 250 0 7 chr3 153086002 153086155 -6513628 + B3 SINE B2 2 153 -63 1 1752 789 254 43 55 chr3 153088302 153088740 -6511043 + RMER17C LTR ERVK 5 410 0 1 1752 21 0 0 0 chr3 153088846 153088867 -6510916 + AT_rich Low_complexity Low_complexity 1 21 0 1 1752 501 275 68 15 chr3 153088867 153089000 -6510783 - RSINE1 SINE B4 0 165 26 1 1752 280 217 29 0 chr3 153089012 153089081 -6510702 + (TG)n Simple_repeat Simple_repeat 2 72 0 1 1752 283 198 35 58 chr3 153091226 153091312 -6508471 + MTC LTR MaLR 1 84 -337 1 1753 259 271 17 0 chr3 153093553 153093612 -6506171 + MER20 DNA MER1_type 6 65 -154 1 1753 252 200 0 0 chr3 153093635 153093695 -6506088 + (TG)n Simple_repeat Simple_repeat 1 60 0 1 1753 455 240 0 38 chr3 153093728 153093914 -6505869 + (TATG)n Simple_repeat Simple_repeat 1 179 0 1 1753 427 260 59 59 chr3 153093928 153094063 -6505720 - RSINE1 SINE B4 0 165 31 1 1753 284 338 64 51 chr3 153094055 153094211 -6505572 + MER20 DNA MER1_type 34 191 -28 1 1753 378 277 103 52 chr3 153094247 153094441 -6505342 + B3 SINE B2 5 208 -8 1 1753 180 0 0 0 chr3 153094522 153094542 -6505241 + (T)n Simple_repeat Simple_repeat 1 20 0 1 1753 183 80 0 0 chr3 153094776 153094801 -6504982 + (G)n Simple_repeat Simple_repeat 1 25 0 1 1753 1842 193 82 15 chr3 153095013 153095402 -6504381 + MTD LTR MaLR 5 419 0 1 1753 280 301 65 37 chr3 153096445 153096552 -6503231 + RSINE1 SINE B4 4 113 -52 1 1753 639 218 4 0 chr3 153096613 153096894 -6502889 + (TG)n Simple_repeat Simple_repeat 1 282 0 1 1753 233 296 8 92 chr3 153098489 153098608 -6501175 + B1F SINE Alu 7 115 -34 1 1753 198 71 0 0 chr3 153100224 153100252 -6499531 + (CA)n Simple_repeat Simple_repeat 1 28 0 1 1753 339 25 0 0 chr3 153100454 153100494 -6499289 + (CA)n Simple_repeat Simple_repeat 1 40 0 1 1753 22 0 0 0 chr3 153100548 153100570 -6499213 + AT_rich Low_complexity Low_complexity 1 22 0 1 1753 809 203 85 40 chr3 153100570 153100770 -6499013 - B3 SINE B2 -5 211 3 1 1753 466 317 154 10 chr3 153100770 153100971 -6498812 - B4 SINE B4 -59 233 4 1 1753 329 342 82 52 chr3 153101153 153101421 -6498362 + B4 SINE B4 1 276 -16 1 1753 1004 213 23 36 chr3 153101641 153101737 -6498046 + URR1B DNA MER1_type 1 98 -127 1 1753 3483 30 2 0 chr3 153101737 153102132 -6497651 + MTA_Mm LTR MaLR 1 396 0 1 1753 9553 30 0 0 chr3 153102132 153103230 -6496553 + MTA_Mm-int LTR MaLR 1 1098 0 1 1753 3493 35 0 0 chr3 153103230 153103626 -6496157 + MTA_Mm LTR MaLR 1 396 0 1 1753 1004 213 23 36 chr3 153103626 153103746 -6496037 + URR1B DNA MER1_type 99 214 -11 1 1753 240 212 206 29 chr3 153104462 153104564 -6495219 - LTR86A1 LTR ERVL -372 141 22 1 1753 268 224 91 13 chr3 153104670 153104747 -6495036 - MIR SINE MIR -1 261 179 1 1753 398 314 73 21 chr3 153105455 153105689 -6494094 - L1MEg LINE L1 -3293 2853 2608 1 1753 273 57 0 0 chr3 153105695 153105730 -6494053 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1 1753 2450 168 35 67 chr3 153105856 153106143 -6493640 - RLTR20B3 LTR ERVK -58 519 247 1 1753 192 40 0 0 chr3 153106143 153106168 -6493615 + (TCTCC)n Simple_repeat Simple_repeat 2 26 0 1 1753 2450 168 35 67 chr3 153106168 153106415 -6493368 - RLTR20B3 LTR ERVK -331 246 2 1 1753 423 0 0 0 chr3 153106456 153106503 -6493280 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 1753 442 277 167 21 chr3 153106507 153106699 -6493084 - B4A SINE B4 -72 220 1 1 1753 616 262 90 45 chr3 153106726 153106970 -6492813 - ORR1E LTR MaLR -7 352 98 1 1753 416 304 90 40 chr3 153107347 153107570 -6492213 - L1MEg LINE L1 -4086 2156 1923 1 1753 300 336 38 8 chr3 153107804 153107936 -6491847 - L1MEg LINE L1 -4691 1551 1416 1 1753 235 296 113 45 chr3 153108429 153108694 -6491089 - L1MEg LINE L1 -5212 1030 748 1 1753 260 277 36 97 chr3 153109134 153109382 -6490401 + RMER17C LTR ERVK 130 362 -48 1 1753 533 219 194 0 chr3 153110021 153110176 -6489607 + RMER15 LTR ERVL 374 558 -17 1 1753 306 335 92 48 chr3 153110507 153110668 -6489115 - L1M5 LINE L1 -532 5641 5461 1 1753 309 51 0 0 chr3 153110668 153110707 -6489076 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 1 1753 306 335 92 48 chr3 153110707 153110818 -6488965 - L1M5 LINE L1 -713 5460 5357 1 1753 386 65 16 0 chr3 153111157 153111219 -6488564 + (CA)n Simple_repeat Simple_repeat 2 64 0 1 1753 1374 57 0 0 chr3 153111309 153111609 -6488174 + (TCC)n Simple_repeat Simple_repeat 1 300 0 1 1753 297 75 0 0 chr3 153111998 153112038 -6487745 + (ATG)n Simple_repeat Simple_repeat 2 41 0 1 1753 345 125 0 0 chr3 153113002 153113058 -6486725 + (TCC)n Simple_repeat Simple_repeat 3 58 0 1 1753 1076 82 0 39 chr3 153113132 153113285 -6486498 + B1_Mus2 SINE Alu 1 147 0 1 1753 630 310 131 10 chr3 153113322 153113854 -6485929 + L1MA4 LINE L1 5257 5853 -459 1 1753 408 138 0 0 chr3 153114147 153114212 -6485571 + L1_Mm LINE L1 2913 2977 -2906 1 1753 22 0 0 0 chr3 153114586 153114608 -6485175 + AT_rich Low_complexity Low_complexity 1 22 0 1 1753 511 86 172 0 chr3 153114816 153114909 -6484874 - RMER15 LTR ERVL -463 112 4 1 1753 536 288 76 36 chr3 153115046 153115295 -6484488 + L1MA4 LINE L1 5823 6081 -98 1 1753 456 71 57 0 chr3 153115303 153115394 -6484389 + ORR1B1 LTR MaLR 1 125 -269 1 1753 1092 113 0 6 chr3 153115395 153115564 -6484219 + RMER10B LTR ERVL 3 170 -228 1 1753 180 77 0 0 chr3 153115572 153115598 -6484185 + (TCTCTG)n Simple_repeat Simple_repeat 3 28 0 1 1753 631 195 39 32 chr3 153116014 153116168 -6483615 + RMER10B LTR ERVL 244 398 0 1 1753 2163 164 46 62 chr3 153116187 153116608 -6483175 + RLTR16 LTR ERVK 1 418 -87 1 1753 180 0 0 0 chr3 153116608 153116628 -6483155 + (TG)n Simple_repeat Simple_repeat 1 20 0 1 1753 324 0 0 0 chr3 153116628 153116663 -6483120 + (GA)n Simple_repeat Simple_repeat 1 36 0 1 1753 2163 164 46 62 chr3 153116663 153116741 -6483042 + RLTR16 LTR ERVK 419 492 -13 1 1753 281 174 101 0 chr3 153116738 153116807 -6482976 + RLTR16 LTR ERVK 430 505 0 1 1753 1360 139 28 16 chr3 153116807 153117053 -6482730 + ORR1A4 LTR MaLR 81 329 0 1 1753 342 269 122 50 chr3 153117055 153117235 -6482548 + L1MA4 LINE L1 6105 6297 -62 1 1753 963 198 15 0 chr3 153118772 153118969 -6480814 - B3 SINE B2 -15 201 2 1 1753 423 0 0 0 chr3 153119190 153119237 -6480546 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 1753 765 85 0 0 chr3 153119558 153119664 -6480119 + (TCTCCC)n Simple_repeat Simple_repeat 4 109 0 1 1753 957 263 65 60 chr3 153120196 153120564 -6479219 + ORR1D2 LTR MaLR 1 370 0 1 1753 581 256 141 77 chr3 153120652 153120949 -6478834 + MTE2b LTR MaLR 49 364 -15 1 1753 342 67 0 0 chr3 153121040 153121085 -6478698 + (CAAT)n Simple_repeat Simple_repeat 2 46 0 1 1753 243 281 198 40 chr3 153121148 153121274 -6478509 + B4 SINE B4 3 148 -144 1 1753 207 139 0 0 chr3 153121316 153121352 -6478431 + (CAAA)n Simple_repeat Simple_repeat 4 39 0 1 1753 375 209 237 25 chr3 153122238 153122356 -6477427 + B1_Mur2 SINE Alu 2 144 -5 1 1753 186 43 0 0 chr3 153122366 153122389 -6477394 + (GGA)n Simple_repeat Simple_repeat 2 24 0 1 1753 21 0 0 0 chr3 153122529 153122550 -6477233 + AT_rich Low_complexity Low_complexity 1 21 0 2 1753 778 291 42 59 chr3 153122594 153122948 -6476835 - ORR1E LTR MaLR -4 355 8 2 1753 447 217 58 8 chr3 153124299 153124420 -6475363 + MTEb LTR MaLR 4 130 -249 2 1753 2839 134 47 11 chr3 153124447 153124975 -6474808 - RLTR31_Mm LTR ERVK -14 547 1 2 1753 773 234 64 60 chr3 153124975 153125225 -6474558 + MTEb LTR MaLR 129 379 0 2 1753 555 263 64 12 chr3 153125306 153125479 -6474304 + B3A SINE B2 1 182 -16 2 1753 528 227 0 0 chr3 153125517 153125693 -6474090 + (CA)n Simple_repeat Simple_repeat 1 176 0 2 1753 411 21 0 0 chr3 153126149 153126197 -6473586 + (CA)n Simple_repeat Simple_repeat 1 48 0 2 1753 378 0 0 0 chr3 153126197 153126238 -6473545 + (GA)n Simple_repeat Simple_repeat 2 43 0 2 1753 926 265 71 32 chr3 153126406 153126745 -6473038 + MTE2b LTR MaLR 20 371 -8 2 1753 853 232 16 11 chr3 153127543 153127726 -6472057 + Lx5 LINE L1 6525 6708 -342 2 1753 8392 78 15 3 chr3 153127785 153129641 -6470142 + L1VL4 LINE L1 185 2058 -1501 2 1753 469 301 28 0 chr3 153129685 153129828 -6469955 - B1F1 SINE Alu -2 147 1 2 1753 1543 122 180 21 chr3 153129886 153130170 -6469613 - ORR1A4 LTR MaLR 0 329 1 2 1753 26 0 0 0 chr3 153130418 153130444 -6469339 + AT_rich Low_complexity Low_complexity 1 26 0 2 1753 1088 204 62 0 chr3 153131263 153131489 -6468294 + MTD LTR MaLR 17 256 -163 2 1753 229 190 155 0 chr3 153131527 153131585 -6468198 + MTD LTR MaLR 355 421 0 2 1753 314 310 0 0 chr3 153133139 153133226 -6466557 + (CA)n Simple_repeat Simple_repeat 2 88 0 2 1753 9349 70 4 13 chr3 153133515 153134776 -6465007 - L1_Mur1 LINE L1 -812 5074 3825 2 1753 468 122 0 0 chr3 153138550 153138632 -6461151 + (CACG)n Simple_repeat Simple_repeat 2 83 0 2 1753 286 301 39 94 chr3 153139680 153139860 -6459923 - MER106A DNA MER1_type -66 170 1 2 1753 191 88 29 0 chr3 153140145 153140179 -6459604 + (CAAAG)n Simple_repeat Simple_repeat 1 35 0 2 1753 2964 171 59 55 chr3 153140996 153141674 -6458109 + RMER1B Other Other 183 1057 -9 2 1753 252 239 45 0 chr3 153141887 153141975 -6457808 - B1F SINE Alu -43 106 15 2 1753 535 265 8 0 chr3 153142323 153142440 -6457343 - ID_B1 SINE B4 -8 216 99 2 1753 567 246 129 17 chr3 153142694 153142872 -6456911 + B3A SINE B2 1 198 0 2 1753 278 384 38 25 chr3 153143327 153143524 -6456259 + MER44B DNA MER2_type 43 245 -305 2 1753 1229 220 54 76 chr3 153143548 153143917 -6455866 + MTEa LTR MaLR 1 361 -18 2 1753 219 103 0 0 chr3 153145868 153145907 -6453876 + (TCTG)n Simple_repeat Simple_repeat 2 40 0 2 1753 308 229 59 24 chr3 153145948 153146033 -6453750 - B4A SINE B4 -203 89 2 2 1753 427 243 40 0 chr3 153146039 153146187 -6453596 + Tigger5 DNA MER2_type 2157 2310 -96 2 1753 598 145 8 8 chr3 153147308 153147433 -6452350 + (TGGA)n Simple_repeat Simple_repeat 2 126 0 2 1753 338 259 35 44 chr3 153149234 153149347 -6450436 - MLT1D LTR MaLR -144 361 250 2 1753 310 222 12 36 chr3 153149457 153149541 -6450242 - MLT1D LTR MaLR -543 84 3 2 1753 1415 164 118 9 chr3 153149670 153149805 -6449978 + ORR1B2 LTR MaLR 1 157 -210 2 1753 450 0 0 0 chr3 153149805 153149855 -6449928 + (TC)n Simple_repeat Simple_repeat 2 51 0 2 1753 1415 164 118 9 chr3 153149855 153150034 -6449749 + ORR1B2 LTR MaLR 158 348 -19 2 1753 852 258 60 39 chr3 153150822 153150990 -6448793 + B4 SINE B4 1 177 -115 2 1753 1761 144 68 120 chr3 153150990 153151416 -6448367 - MTB_Mm LTR MaLR 0 407 4 2 1753 852 258 60 39 chr3 153151416 153151529 -6448254 + B4 SINE B4 178 288 -4 2 1753 261 228 235 10 chr3 153151666 153151768 -6448015 - MER5A1 DNA MER1_type 0 166 42 2 1753 223 49 24 24 chr3 153153757 153153799 -6445984 + (TGGGGG)n Simple_repeat Simple_repeat 2 43 0 2 1753 204 211 38 19 chr3 153153802 153153855 -6445928 + GA-rich Low_complexity Low_complexity 2 55 0 2 1753 249 306 146 26 chr3 153156021 153156172 -6443611 + MIRm SINE MIR 85 253 -23 2 1753 503 320 23 53 chr3 153158008 153158303 -6441480 + MLT2D LTR ERVL 1 286 -178 2 1753 1388 331 75 14 chr3 153158793 153159914 -6439869 + L1M2 LINE L1 2426 3614 -2529 2 1753 818 296 111 23 chr3 153159929 153160271 -6439512 + MTE2b LTR MaLR 8 379 0 2 1753 830 318 149 38 chr3 153160306 153161619 -6438164 + L1M2 LINE L1 3721 5179 -964 2 1753 312 263 190 12 chr3 153161841 153162012 -6437771 + L1M2 LINE L1 5353 5553 -627 2 1753 229 277 180 25 chr3 153162018 153162140 -6437643 + Lx7 LINE L1 5602 5742 -1954 2 1753 257 223 11 0 chr3 153162140 153162234 -6437549 + (CA)n Simple_repeat Simple_repeat 1 95 0 2 1753 614 287 132 26 chr3 153162412 153162798 -6436985 - L1MC3 LINE L1 -201 7584 7158 2 1753 369 0 0 0 chr3 153163408 153163449 -6436334 + (TG)n Simple_repeat Simple_repeat 2 42 0 2 1753 268 280 11 85 chr3 153167165 153167263 -6432520 - MTE2a LTR MaLR -210 169 82 2 1753 388 230 23 11 chr3 153167278 153167366 -6432417 - MTE2a LTR MaLR -288 91 3 2 1753 333 222 20 44 chr3 153168553 153168741 -6431042 - RMER6B LTR ERVK -1 460 242 2 1753 316 364 24 12 chr3 153168873 153169040 -6430743 + MTD-int LTR MaLR 1090 1258 0 2 1753 824 214 193 32 chr3 153169042 153169322 -6430461 + MTD LTR MaLR 3 327 -92 2 1753 511 216 19 95 chr3 153170019 153170198 -6429585 - MTEa LTR MaLR 0 379 195 2 1753 254 274 11 45 chr3 153170941 153171029 -6428754 + B4 SINE B4 2 86 -206 2 1753 257 151 56 19 chr3 153171165 153171219 -6428564 + Lx8 LINE L1 7415 7470 -3 2 1753 663 290 4 79 chr3 153171229 153171457 -6428326 + B4 SINE B4 82 292 0 2 1753 474 243 0 0 chr3 153171458 153171598 -6428185 + (CA)n Simple_repeat Simple_repeat 2 141 0 2 1753 311 294 33 0 chr3 153171768 153171860 -6427923 - L1MDa LINE L1 -4110 2523 2429 2 1753 713 269 44 54 chr3 153176172 153176467 -6423316 - B4A SINE B4 0 292 1 2 1753 467 311 83 24 chr3 153177761 153177929 -6421854 + B4 SINE B4 1 178 -114 2 1753 992 220 91 40 chr3 153177965 153178240 -6421543 + B4A SINE B4 1 289 -3 2 1753 780 266 36 59 chr3 153178423 153178643 -6421140 - B3 SINE B2 -1 215 1 2 1753 226 146 0 0 chr3 153179236 153179277 -6420506 - ORR1C1 LTR MaLR -30 354 314 2 1753 183 80 80 0 chr3 153179279 153179329 -6420454 + T-rich Low_complexity Low_complexity 1 54 0 2 1753 896 52 0 0 chr3 153179330 153179445 -6420338 - B1_Mus2 SINE Alu 0 147 33 2 1753 1201 191 164 0 chr3 153179442 153179698 -6420085 - ORR1C1 LTR MaLR -78 300 3 2 1753 508 286 10 81 chr3 153180143 153180341 -6419442 + Lx8 LINE L1 5726 5909 -1564 2 1753 826 280 165 3 chr3 153180987 153181320 -6418463 - Lx8 LINE L1 -5 7468 7082 2 1753 712 328 20 15 chr3 153181351 153181454 -6418329 - ID_B1 SINE B4 -20 204 104 2 1753 180 0 0 0 chr3 153181454 153181474 -6418309 + (CA)n Simple_repeat Simple_repeat 2 21 0 2 1753 712 328 20 15 chr3 153181474 153181571 -6418212 - ID_B1 SINE B4 -121 103 4 2 1753 279 303 13 0 chr3 153181574 153181650 -6418133 - PB1D10 SINE Alu -29 88 12 2 1753 360 337 29 17 chr3 153183230 153183405 -6416378 + MIR SINE MIR 86 262 0 2 1753 1265 237 110 0 chr3 153184079 153184416 -6415367 + MTEa LTR MaLR 6 379 0 2 1753 254 263 108 55 chr3 153185039 153185190 -6414593 + MIR SINE MIR 13 178 -30 2 1753 334 269 89 7 chr3 153185354 153185489 -6414294 - MER117 DNA MER1_type -35 162 17 2 1753 459 0 0 0 chr3 153186381 153186432 -6413351 + (TG)n Simple_repeat Simple_repeat 2 52 0 2 1753 319 127 36 0 chr3 153186485 153186540 -6413243 - HAL1-3A_ME LINE L1 -827 2031 1975 2 1753 218 176 0 19 chr3 153186552 153186604 -6413179 + (TG)n Simple_repeat Simple_repeat 2 52 0 2 1753 293 365 0 0 chr3 153186677 153186784 -6412999 + (TG)n Simple_repeat Simple_repeat 1 107 0 2 1753 285 159 0 0 chr3 153187064 153187127 -6412656 + GA-rich Low_complexity Low_complexity 5 67 0 2 1753 1041 119 0 0 chr3 153187130 153187851 -6411932 + (GGA)n Simple_repeat Simple_repeat 1 721 0 2 1753 1082 85 6 0 chr3 153187883 153188060 -6411723 + (GGA)n Simple_repeat Simple_repeat 3 180 0 2 1753 205 184 61 0 chr3 153189648 153189697 -6410086 + (TTCA)n Simple_repeat Simple_repeat 2 53 0 2 1753 834 275 84 28 chr3 153190483 153190839 -6408944 + MTEa LTR MaLR 4 379 0 2 1753 906 158 196 11 chr3 153190972 153191151 -6408632 + B3 SINE B2 1 212 -4 2 1753 1185 55 0 14 chr3 153191157 153191304 -6408479 + B1_Mus2 SINE Alu 1 145 -2 2 1753 1709 156 111 9 chr3 153191453 153191795 -6407988 + RLTR31A_Mm LTR ERVK 5 381 -203 2 1753 623 290 77 45 chr3 153192056 153192510 -6407273 + MER34 LTR ERV1 2 550 -21 2 1753 471 235 0 0 chr3 153192510 153192676 -6407107 + (TG)n Simple_repeat Simple_repeat 2 167 0 2 1753 243 267 0 0 chr3 153192707 153192842 -6406941 + (TG)n Simple_repeat Simple_repeat 2 136 0 2 1753 447 19 0 0 chr3 153193968 153194020 -6405763 + (GA)n Simple_repeat Simple_repeat 2 53 0 2 1753 1744 180 36 3 chr3 153195176 153195355 -6404428 - Lx9 LINE L1 -382 7262 7074 2 1753 423 0 0 0 chr3 153195355 153195402 -6404381 + (TG)n Simple_repeat Simple_repeat 2 48 0 2 1753 1744 206 49 5 chr3 153195402 153195560 -6404223 - Lx9 LINE L1 -571 7073 6760 2 1753 12075 115 15 11 chr3 153195762 153198447 -6401336 - L1_Mus4 LINE L1 -15 6621 3927 2 1753 719 199 20 20 chr3 153198675 153198824 -6400959 - B1_Mur3 SINE Alu 0 149 1 2 1753 442 281 92 14 chr3 153198846 153198987 -6400796 - RSINE1 SINE B4 -12 153 2 2 1753 248 236 11 0 chr3 153200254 153200343 -6399440 + CT-rich Low_complexity Low_complexity 2 91 0 2 1753 22 35 0 0 chr3 153200787 153200816 -6398967 + AT_rich Low_complexity Low_complexity 1 29 0 2 1753 812 256 124 34 chr3 153200857 153201180 -6398603 - MTD LTR MaLR -50 369 18 2 1753 378 147 73 0 chr3 153202398 153202466 -6397317 - B2_Mm1t SINE B2 -8 185 113 2 1753 201 279 46 0 chr3 153202547 153202627 -6397156 + MIR SINE MIR 112 190 -72 2 1753 1028 58 73 0 chr3 153203660 153203797 -6395986 + B1_Mm SINE Alu 1 147 0 2 1753 702 257 79 11 chr3 153203808 153203997 -6395786 - B3 SINE B2 -10 206 5 2 1753 209 303 0 0 chr3 153204097 153204163 -6395620 + (TTGG)n Simple_repeat Simple_repeat 4 69 0 2 1753 274 246 88 0 chr3 153204238 153204295 -6395488 - B1F SINE Alu -6 143 82 2 1753 373 339 18 0 chr3 153204345 153204454 -6395329 - PB1D7 SINE Alu -4 116 6 2 1753 470 131 0 23 chr3 153204701 153204787 -6394996 + GA-rich Low_complexity Low_complexity 2 85 0 2 1753 306 0 0 0 chr3 153204836 153204870 -6394913 + (TCTG)n Simple_repeat Simple_repeat 1 34 0 3 1753 2502 83 3 6 chr3 153205213 153205541 -6394242 - ORR1A2 LTR MaLR 0 327 1 3 1753 220 203 15 30 chr3 153205724 153205790 -6393993 + CT-rich Low_complexity Low_complexity 2 66 0 3 1753 189 107 0 0 chr3 153207563 153207591 -6392192 + (T)n Simple_repeat Simple_repeat 1 28 0 3 1753 633 268 57 25 chr3 153208944 153209101 -6390682 + RSINE1 SINE B4 4 165 0 3 1753 261 208 0 0 chr3 153209101 153209173 -6390610 + (CA)n Simple_repeat Simple_repeat 1 72 0 3 1753 249 307 144 14 chr3 153209392 153209531 -6390252 - RMER17D2 LTR ERVK -8 801 645 3 1753 183 229 0 0 chr3 153209702 153209763 -6390020 + (CA)n Simple_repeat Simple_repeat 1 61 0 3 1753 416 232 6 0 chr3 153209779 153209956 -6389827 + (CA)n Simple_repeat Simple_repeat 1 178 0 3 1753 243 0 0 0 chr3 153210386 153210413 -6389370 + (CA)n Simple_repeat Simple_repeat 1 27 0 3 1753 298 295 75 25 chr3 153210775 153210935 -6388848 + MIR SINE MIR 85 252 -10 3 1753 303 28 0 0 chr3 153210947 153210983 -6388800 + (CA)n Simple_repeat Simple_repeat 2 37 0 3 1753 592 291 25 12 chr3 153211636 153211796 -6387987 - RSINE1 SINE B4 0 165 4 3 1753 205 378 18 26 chr3 153212647 153212761 -6387022 + MIRc SINE MIR 45 157 -111 3 1753 718 145 114 0 chr3 153212761 153212892 -6386891 + B1_Mus1 SINE Alu 3 148 0 3 1753 332 271 177 44 chr3 153213231 153213389 -6386394 + L1ME3B LINE L1 4540 4718 -1428 3 1753 533 173 90 52 chr3 153213575 153213709 -6386074 - B1F SINE Alu -6 143 5 3 1753 417 315 94 25 chr3 153213754 153214070 -6385713 + L1ME3B LINE L1 5257 5600 -640 3 1753 398 294 16 32 chr3 153214074 153214197 -6385586 + B3 SINE B2 96 216 0 3 1753 820 227 97 10 chr3 153214250 153214446 -6385337 + B3 SINE B2 1 213 -3 3 1753 272 320 67 17 chr3 153214496 153214734 -6385049 + L1ME3B LINE L1 5688 5937 -303 3 1753 1830 282 78 16 chr3 153214746 153215388 -6384395 + Lx7 LINE L1 6726 7407 -289 3 1753 249 221 44 55 chr3 153215422 153215513 -6384270 + Lx7 LINE L1 7578 7667 -29 3 1753 180 0 0 0 chr3 153215917 153215937 -6383846 + (CGGA)n Simple_repeat Simple_repeat 2 21 0 3 1753 297 0 0 0 chr3 153215937 153215969 -6383814 + (CCTG)n Simple_repeat Simple_repeat 3 35 0 3 1753 3751 214 29 40 chr3 153215993 153217370 -6382413 + RMER1B Other Other 1 955 -111 3 1753 567 0 0 0 chr3 153217370 153217433 -6382350 + (GTTTG)n Simple_repeat Simple_repeat 2 64 0 3 1753 3751 189 22 34 chr3 153217433 153217543 -6382240 + RMER1B Other Other 956 1065 -1 3 1753 746 93 29 0 chr3 153217890 153218029 -6381754 + (TAGA)n Simple_repeat Simple_repeat 2 144 0 3 1753 801 305 44 19 chr3 153218607 153218861 -6380922 + B4 SINE B4 50 292 0 3 1753 27 73 0 0 chr3 153219891 153219946 -6379837 + AT_rich Low_complexity Low_complexity 1 55 0 3 1753 191 272 12 0 chr3 153220007 153220088 -6379695 + (CA)n Simple_repeat Simple_repeat 1 82 0 3 1753 8273 51 0 10 chr3 153220704 153221873 -6377910 + L1_Mus1 LINE L1 5411 6565 -2 3 1753 226 343 60 6 chr3 153222368 153222535 -6377248 - L1M5 LINE L1 -1056 5090 4915 3 1753 246 205 21 144 chr3 153222937 153223034 -6376749 + MLT1E3 LTR MaLR 137 221 -403 3 1753 196 291 0 35 chr3 153223042 153223099 -6376684 + MIRm SINE MIR 93 147 -129 3 1754 224 237 65 13 chr3 153223461 153223538 -6376245 + L2 LINE L2 2729 2809 -610 3 1754 414 0 0 0 chr3 153223625 153223671 -6376112 + (CA)n Simple_repeat Simple_repeat 1 46 0 3 1754 2046 191 93 30 chr3 153223922 153224397 -6375386 + RLTR16 LTR ERVK 1 505 0 3 1754 285 29 0 0 chr3 153225502 153225536 -6374247 + (TTG)n Simple_repeat Simple_repeat 2 35 0 3 1754 198 0 0 0 chr3 153225826 153225848 -6373935 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 3 1754 269 250 133 20 chr3 153226136 153226234 -6373549 + Charlie8 DNA MER1_type 80 188 -2240 3 1754 209 292 0 0 chr3 153226442 153226490 -6373293 - L4 LINE RTE -183 1846 1799 3 1754 698 301 62 75 chr3 153226834 153227139 -6372644 - MTEa LTR MaLR -6 373 73 3 1754 312 261 214 7 chr3 153227025 153227179 -6372604 - MT2A LTR ERVL -347 186 1 3 1754 4112 63 2 0 chr3 153228098 153228607 -6371176 - Lx3_Mus LINE L1 0 7009 6500 3 1754 1021 90 3 28 chr3 153228690 153228881 -6370902 - MTB_Mm LTR MaLR -39 382 199 3 1754 187 0 0 108 chr3 153228971 153229008 -6370775 + (TTTTTA)n Simple_repeat Simple_repeat 2 34 0 3 1754 509 343 0 0 chr3 153229013 153229147 -6370636 + B1F SINE Alu 1 134 -15 3 1754 294 257 27 13 chr3 153229219 153229294 -6370489 + Lx8 LINE L1 6947 7022 -451 3 1754 317 310 173 25 chr3 153229748 153229910 -6369873 - MIRb SINE MIR -59 209 24 3 1754 3067 75 5 12 chr3 153230072 153230475 -6369308 + MTB LTR MaLR 1 400 0 3 1754 279 0 0 0 chr3 153231354 153231385 -6368398 + (TG)n Simple_repeat Simple_repeat 2 32 0 3 1754 350 292 26 62 chr3 153232479 153232592 -6367191 + B4A SINE B4 40 148 -144 3 1754 4649 38 4 0 chr3 153232635 153233183 -6366600 + L1Md_T LINE L1 6032 6581 -1 3 1754 315 49 0 0 chr3 153233265 153233306 -6366477 + (CA)n Simple_repeat Simple_repeat 2 42 0 3 1754 253 313 45 0 chr3 153233334 153233401 -6366382 + ID4 SINE ID 2 71 -12 3 1754 1376 252 47 44 chr3 153233609 153233995 -6365788 - MTD LTR MaLR -15 404 18 3 1754 504 297 72 0 chr3 153236097 153236235 -6363548 + B3A SINE B2 1 148 -50 3 1754 288 0 0 0 chr3 153236238 153236270 -6363513 + (CA)n Simple_repeat Simple_repeat 2 33 0 3 1754 337 305 96 83 chr3 153236442 153236524 -6363259 + B4A SINE B4 2 82 -210 3 1754 4690 106 118 42 chr3 153236524 153237349 -6362434 - RMER17D LTR ERVK -2 887 1 3 1754 337 305 96 83 chr3 153237349 153237495 -6362288 + B4A SINE B4 83 233 -59 3 1754 447 19 0 0 chr3 153237532 153237584 -6362199 + (TG)n Simple_repeat Simple_repeat 2 53 0 3 1754 604 239 35 0 chr3 153237857 153237999 -6361784 - B1F2 SINE Alu -2 147 1 3 1754 1791 188 67 27 chr3 153239701 153240070 -6359713 + ORR1C1 LTR MaLR 1 370 -8 3 1754 5387 199 135 17 chr3 153240069 153241333 -6358450 + ORR1C1-int LTR MaLR 96 1509 0 3 1754 1467 161 211 3 chr3 153241333 153241645 -6358138 + ORR1C1 LTR MaLR 1 377 -1 3 1754 267 229 0 28 chr3 153241671 153241717 -6358066 + polypyrimidine Low_complexity Low_complexity 26 70 0 3 1754 180 0 0 0 chr3 153241717 153241737 -6358046 + (TG)n Simple_repeat Simple_repeat 2 21 0 3 1754 267 229 0 28 chr3 153241737 153241762 -6358021 + polypyrimidine Low_complexity Low_complexity 1 25 0 3 1754 532 170 12 12 chr3 153241762 153241935 -6357848 + (TCTCTG)n Simple_repeat Simple_repeat 2 174 0 3 1754 426 20 0 0 chr3 153241952 153242003 -6357780 + (TG)n Simple_repeat Simple_repeat 2 52 0 3 1754 820 266 78 28 chr3 153242003 153242258 -6357525 - B4 SINE B4 -23 269 2 3 1754 1017 25 0 0 chr3 153244519 153244639 -6355144 + (TC)n Simple_repeat Simple_repeat 1 120 0 3 1754 222 62 0 0 chr3 153244639 153244670 -6355113 + (CA)n Simple_repeat Simple_repeat 1 32 0 3 1754 615 290 73 11 chr3 153244670 153244871 -6354912 + B4 SINE B4 72 292 0 3 1754 278 82 41 0 chr3 153244902 153244951 -6354832 + (CAGAGA)n Simple_repeat Simple_repeat 6 56 0 3 1754 392 262 155 39 chr3 153246737 153246892 -6352891 + B3A SINE B2 1 173 -25 3 1754 414 0 0 0 chr3 153246892 153246938 -6352845 + (GA)n Simple_repeat Simple_repeat 2 47 0 3 1754 444 37 0 0 chr3 153246978 153247032 -6352751 + (CA)n Simple_repeat Simple_repeat 2 55 0 3 1754 570 29 0 0 chr3 153248499 153248567 -6351216 + (GGGA)n Simple_repeat Simple_repeat 1 68 0 3 1754 461 294 100 4 chr3 153248581 153248830 -6350953 + L1M4 LINE L1 5315 5587 -597 3 1754 543 253 55 75 chr3 153248983 153249184 -6350599 + B3A SINE B2 1 197 -1 3 1754 327 258 0 41 chr3 153249698 153249795 -6349988 + G-rich Low_complexity Low_complexity 2 94 0 3 1754 255 185 19 0 chr3 153250345 153250399 -6349384 - Charlie5 DNA MER1_type -4 2620 2566 3 1754 597 265 83 32 chr3 153250421 153250577 -6349206 + RSINE1 SINE B4 2 165 0 3 1754 268 244 89 13 chr3 153250602 153250681 -6349102 - Charlie5 DNA MER1_type -80 2544 2460 3 1754 234 0 0 0 chr3 153251808 153251834 -6347949 + (GGGA)n Simple_repeat Simple_repeat 4 29 0 3 1754 336 346 81 21 chr3 153251940 153252126 -6347657 - MIRb SINE MIR -8 260 64 3 1754 324 0 0 0 chr3 153253616 153253652 -6346131 + (TG)n Simple_repeat Simple_repeat 2 37 0 3 1754 198 0 0 0 chr3 153254070 153254092 -6345691 + (A)n Simple_repeat Simple_repeat 1 22 0 3 1754 915 274 35 109 chr3 153254919 153255287 -6344496 - MTE2a LTR MaLR -38 341 1 3 1754 451 310 27 44 chr3 153255417 153255705 -6344078 + MLT1B LTR MaLR 113 386 -4 3 1754 190 143 44 67 chr3 153255705 153255750 -6344033 - MIRc SINE MIR -100 168 125 3 1754 679 251 34 101 chr3 153255755 153255963 -6343820 + B3 SINE B2 23 216 0 3 1754 211 271 14 28 chr3 153256933 153257005 -6342778 - ID4 SINE ID -8 75 5 3 1754 1210 305 93 39 chr3 153257478 153257938 -6341845 + RCHARR1 DNA MER1_type 1 485 -489 3 1754 610 236 10 128 chr3 153257909 153258113 -6341670 + RCHARR1 DNA MER1_type 784 963 -11 3 1754 324 70 0 0 chr3 153258459 153258502 -6341281 + (T)n Simple_repeat Simple_repeat 1 43 0 3 1754 2433 101 3 6 chr3 153258694 153259022 -6340761 - ORR1A2 LTR MaLR 0 327 1 3 1754 687 270 21 142 chr3 153259472 153259804 -6339979 + B4A SINE B4 1 292 0 3 1754 734 157 6 0 chr3 153259831 153260009 -6339774 + (CA)n Simple_repeat Simple_repeat 2 180 0 3 1754 355 58 19 19 chr3 153260037 153260090 -6339693 + HAL1-3A_ME LINE L1 1975 2027 -831 3 1754 446 225 6 0 chr3 153260109 153260287 -6339496 + (CA)n Simple_repeat Simple_repeat 2 180 0 3 1754 241 231 0 0 chr3 153260288 153260353 -6339430 + GA-rich Low_complexity Low_complexity 2 66 0 3 1754 416 302 82 66 chr3 153260596 153260962 -6338821 + L1MB2 LINE L1 5636 6007 -176 3 1754 350 311 79 32 chr3 153261142 153261394 -6338389 + RMER5 LTR ERV1 254 517 -17 3 1754 726 229 29 6 chr3 153261409 153261580 -6338203 + L1MB2 LINE L1 5995 6169 -2 3 1754 275 270 44 22 chr3 153261603 153261694 -6338089 - MLT1H LTR MaLR -50 499 407 3 1754 423 344 42 42 chr3 153262187 153262378 -6337405 + MTE2b LTR MaLR 107 297 -82 3 1754 1646 188 81 17 chr3 153262408 153262754 -6337029 + ORR1C1 LTR MaLR 1 368 -10 4 1754 239 272 43 21 chr3 153263922 153264016 -6335767 - MER89 LTR ERV1 -99 460 365 4 1754 408 262 98 0 chr3 153264046 153264168 -6335615 - MER89 LTR ERV1 -257 302 169 4 1754 310 237 45 18 chr3 153264245 153264329 -6335454 - PB1D9 SINE Alu -34 115 36 4 1754 638 247 226 0 chr3 153264887 153265122 -6334661 + B4A SINE B4 1 288 -4 4 1754 349 350 0 0 chr3 153265131 153265248 -6334535 + (CA)n Simple_repeat Simple_repeat 2 118 0 4 1754 1228 249 60 88 chr3 153265253 153265637 -6334146 - MTD LTR MaLR -1 418 46 4 1754 523 27 27 0 chr3 153266249 153266322 -6333461 + (TAGA)n Simple_repeat Simple_repeat 1 75 0 4 1754 533 288 36 7 chr3 153266436 153266576 -6333207 + RSINE1 SINE B4 2 145 -20 4 1754 314 157 20 0 chr3 153266605 153266656 -6333127 + HAL1-3A_ME LINE L1 1975 2026 -832 4 1754 186 219 0 0 chr3 153267149 153267213 -6332570 + C-rich Low_complexity Low_complexity 1 64 0 4 1754 4706 44 0 16 chr3 153267292 153267866 -6331917 - L1Md_F2 LINE L1 -12 6570 6006 4 1754 7158 78 41 4 chr3 153270032 153271176 -6328607 + L1_Mus4 LINE L1 5426 6611 -25 4 1754 678 25 0 0 chr3 153271182 153271262 -6328521 + (GGGGA)n Simple_repeat Simple_repeat 2 81 0 4 1754 311 353 108 47 chr3 153272905 153273133 -6326650 + B4 SINE B4 49 292 0 4 1754 367 113 14 14 chr3 153273136 153273208 -6326575 + (CA)n Simple_repeat Simple_repeat 1 72 0 4 1754 203 286 18 0 chr3 153273414 153273470 -6326313 - MIRb SINE MIR -98 170 114 4 1754 290 376 81 17 chr3 153273440 153273613 -6326170 + MIRc SINE MIR 14 197 -71 4 1754 238 325 0 25 chr3 153274087 153274166 -6325617 + L2a LINE L2 3339 3415 -11 4 1754 1203 88 0 0 chr3 153274647 153274939 -6324844 + (CA)n Simple_repeat Simple_repeat 1 292 0 4 1754 253 330 40 50 chr3 153275630 153275729 -6324054 + PB1D10 SINE Alu 13 110 -7 4 1754 1273 65 40 66 chr3 153275968 153276166 -6323617 + B2_Mm2 SINE B2 2 194 -1 4 1754 314 45 23 0 chr3 153276180 153276224 -6323559 + (TG)n Simple_repeat Simple_repeat 2 46 0 4 1754 1099 88 0 0 chr3 153276311 153276458 -6323325 + B1_Mus2 SINE Alu 1 147 0 4 1754 361 273 54 134 chr3 153277137 153277491 -6322292 + MLT1B LTR MaLR 6 538 -57 4 1754 1143 66 0 0 chr3 153277502 153277639 -6322144 - B1_Mm SINE Alu -6 141 5 4 1754 2413 271 108 28 chr3 153277648 153278442 -6321341 - RCHARR1 DNA MER1_type -45 929 72 4 1754 766 296 74 7 chr3 153279108 153279377 -6320406 - B4A SINE B4 -5 287 1 4 1754 1548 282 43 16 chr3 153280542 153281032 -6318751 - Lx5 LINE L1 -19 7031 6529 4 1754 293 381 63 20 chr3 153281250 153281504 -6318279 - MER115 DNA Tip100 -426 267 3 4 1754 1121 90 7 0 chr3 153281779 153281924 -6317859 - B1_Mus2 SINE Alu -1 146 1 4 1754 1433 208 114 40 chr3 153281947 153282297 -6317486 - MTD LTR MaLR -22 397 22 4 1754 180 0 0 0 chr3 153282297 153282317 -6317466 + (CAA)n Simple_repeat Simple_repeat 2 21 0 4 1754 509 263 14 7 chr3 153282339 153282477 -6317306 - Lx6 LINE L1 -157 7303 7165 4 1754 604 261 0 9 chr3 153282488 153282632 -6317151 - B1F SINE Alu -1 147 6 4 1754 787 299 55 5 chr3 153284646 153284848 -6314935 + 7SK RNA RNA 29 240 -91 4 1754 459 0 0 0 chr3 153285967 153286018 -6313765 + (CA)n Simple_repeat Simple_repeat 1 51 0 4 1754 379 261 59 116 chr3 153286063 153286364 -6313419 - RLTR13D3 LTR ERVK -42 1072 662 4 1754 260 105 0 0 chr3 153286473 153286511 -6313272 - B2_Mm2 SINE B2 -157 38 1 4 1754 229 167 0 0 chr3 153286967 153287003 -6312780 - RLTR13D3 LTR ERVK -1078 36 1 4 1754 184 82 57 67 chr3 153287114 153287219 -6312564 + (TCTG)n Simple_repeat Simple_repeat 1 104 0 4 1754 210 131 45 56 chr3 153287349 153287527 -6312256 + (TCTG)n Simple_repeat Simple_repeat 1 176 0 4 1754 240 115 47 47 chr3 153287551 153287679 -6312104 + (TCTG)n Simple_repeat Simple_repeat 1 128 0 4 1754 281 128 50 60 chr3 153287809 153288117 -6311666 + (TCTG)n Simple_repeat Simple_repeat 1 304 0 4 1754 3949 126 64 12 chr3 153291384 153291520 -6308263 + RMER17B LTR ERVK 265 414 -544 4 1754 992 72 0 7 chr3 153291520 153291659 -6308124 + (TC)n Simple_repeat Simple_repeat 2 139 0 4 1754 3949 126 64 12 chr3 153291659 153292182 -6307601 + RMER17B LTR ERVK 415 957 -1 4 1754 238 289 11 46 chr3 153293316 153293403 -6306380 + BC1_Mm scRNA scRNA 15 98 -54 4 1754 2117 307 92 59 chr3 153293471 153293530 -6306253 + Charlie1 DNA MER1_type 1496 1569 -1212 4 1754 233 29 29 0 chr3 153293530 153293564 -6306219 + (CAAA)n Simple_repeat Simple_repeat 1 35 0 4 1754 2117 307 92 59 chr3 153293564 153294721 -6305062 + Charlie1 DNA MER1_type 1570 2752 -29 4 1754 312 299 91 67 chr3 153294728 153294893 -6304890 + ORR1D2 LTR MaLR 10 178 -192 4 1754 180 97 0 0 chr3 153295860 153295891 -6303892 + (TCTG)n Simple_repeat Simple_repeat 4 34 0 4 1754 537 16 0 0 chr3 153295962 153296024 -6303759 + (TG)n Simple_repeat Simple_repeat 1 62 0 4 1754 225 0 0 0 chr3 153296024 153296049 -6303734 + (CAGA)n Simple_repeat Simple_repeat 2 26 0 4 1754 396 0 0 0 chr3 153296104 153296148 -6303635 + (TG)n Simple_repeat Simple_repeat 1 44 0 4 1754 411 21 0 0 chr3 153296148 153296195 -6303588 + (GA)n Simple_repeat Simple_repeat 1 48 0 4 1754 424 324 0 0 chr3 153296201 153296380 -6303403 + (TG)n Simple_repeat Simple_repeat 2 180 0 4 1754 584 218 93 20 chr3 153297029 153297179 -6302604 + RSINE1 SINE B4 2 162 -3 4 1754 2703 159 14 37 chr3 153297985 153298501 -6301282 + RMER1B Other Other 551 1054 -12 4 1754 610 351 8 34 chr3 153298528 153298766 -6301017 + B4A SINE B4 1 232 -60 4 1754 526 246 115 0 chr3 153298766 153298888 -6300895 + B3 SINE B2 2 137 -79 4 1754 341 95 16 0 chr3 153298903 153298966 -6300817 + (GA)n Simple_repeat Simple_repeat 2 65 0 4 1754 246 254 0 78 chr3 153298976 153299040 -6300743 + B4A SINE B4 230 288 -4 4 1754 426 20 0 0 chr3 153299636 153299687 -6300096 + (AACTG)n Simple_repeat Simple_repeat 3 53 0 4 1754 532 144 0 11 chr3 153300047 153300138 -6299645 - Lx4A LINE L1 -1342 5716 5627 4 1754 202 167 0 87 chr3 153300381 153300427 -6299356 + C-rich Low_complexity Low_complexity 1 42 0 4 1754 620 281 91 26 chr3 153300428 153300658 -6299125 - B4A SINE B4 -46 246 2 4 1754 1837 152 65 52 chr3 153300684 153301053 -6298730 - Lx5 LINE L1 -802 6248 5869 4 1754 3400 38 5 0 chr3 153301053 153301447 -6298336 - MTA_Mm LTR MaLR 0 396 1 4 1754 1837 152 65 52 chr3 153301447 153301536 -6298247 - Lx5 LINE L1 -1182 5868 5784 4 1754 228 76 48 60 chr3 153301537 153301621 -6298162 + T-rich Low_complexity Low_complexity 1 83 0 4 1754 1249 28 0 14 chr3 153301621 153301768 -6298015 - B1_Mm SINE Alu -1 146 2 4 1754 2368 156 68 2 chr3 153301768 153302179 -6297604 - Lx5 LINE L1 -87 5790 5353 4 1754 3353 199 45 13 chr3 153302178 153302869 -6296914 + Lx5 LINE L1 6272 6984 -66 4 1754 216 0 0 0 chr3 153302896 153302920 -6296863 + (TTAA)n Simple_repeat Simple_repeat 1 24 0 4 1754 234 359 0 0 chr3 153302920 153302984 -6296799 - MER2B DNA MER2_type -270 66 3 4 1754 1804 144 58 70 chr3 153303176 153303505 -6296278 - ORR1A3 LTR MaLR -1 325 1 4 1754 411 137 0 0 chr3 153304038 153304111 -6295672 + (CA)n Simple_repeat Simple_repeat 1 73 0 4 1754 377 296 196 51 chr3 153304259 153304504 -6295279 + B4 SINE B4 7 287 -5 4 1754 221 0 35 0 chr3 153304548 153304577 -6295206 + (CA)n Simple_repeat Simple_repeat 2 31 0 4 1754 327 322 17 28 chr3 153307884 153308063 -6291720 - L1MB3 LINE L1 -9 6174 5998 4 1754 303 216 260 8 chr3 153308196 153308413 -6291370 - MTD LTR MaLR 0 419 75 4 1754 327 264 34 11 chr3 153308484 153308572 -6291211 - MTD LTR MaLR -326 93 4 4 1754 306 73 0 0 chr3 153309464 153309505 -6290278 + (AGGGGG)n Simple_repeat Simple_repeat 4 44 0 4 1754 1176 111 0 0 chr3 153309778 153309958 -6289825 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 4 1754 354 336 109 87 chr3 153309984 153310515 -6289268 + L1ME4a LINE L1 5411 5953 -171 4 1754 350 340 20 34 chr3 153310641 153310787 -6288996 - B4 SINE B4 -2 290 147 4 1754 336 280 127 27 chr3 153310877 153310987 -6288796 - B4 SINE B4 -168 124 4 4 1754 231 204 0 0 chr3 153311232 153311281 -6288502 + (CA)n Simple_repeat Simple_repeat 1 49 0 4 1754 517 241 57 0 chr3 153311315 153311456 -6288327 + B1F SINE Alu 1 149 0 4 1754 249 282 90 45 chr3 153311322 153311478 -6288305 - YREP_Mm Unknown Unknown -1504 308 146 4 1754 242 191 0 0 chr3 153311722 153311769 -6288014 + G-rich Low_complexity Low_complexity 1 47 0 4 1754 271 210 288 8 chr3 153312189 153312314 -6287469 - B4 SINE B4 -131 161 2 4 1754 475 231 13 22 chr3 153312571 153313141 -6286642 + (TG)n Simple_repeat Simple_repeat 1 564 0 4 1754 342 350 0 0 chr3 153313179 153313296 -6286487 - Lx9 LINE L1 -312 7332 7216 4 1754 761 225 89 35 chr3 153313296 153313494 -6286289 + MTD LTR MaLR 185 418 -1 4 1754 189 253 202 0 chr3 153313526 153313605 -6286178 - MIR SINE MIR -110 152 58 4 1754 1172 106 6 0 chr3 153313995 153314174 -6285609 + (GA)n Simple_repeat Simple_repeat 1 180 0 4 1754 779 276 28 0 chr3 153314311 153314525 -6285258 + ID_B1 SINE B4 1 220 -4 4 1754 305 175 0 34 chr3 153314794 153314807 -6284976 - HAL1-3A_ME LINE L1 -827 2031 2020 4 1754 192 125 0 0 chr3 153314807 153314839 -6284944 + (TCTG)n Simple_repeat Simple_repeat 2 33 0 4 1754 305 175 0 34 chr3 153314839 153314884 -6284899 - HAL1-3A_ME LINE L1 -839 2019 1975 4 1754 488 172 0 8 chr3 153314884 153315001 -6284782 + (TG)n Simple_repeat Simple_repeat 1 116 0 4 1754 194 414 0 9 chr3 153315697 153315809 -6283974 + MIRb SINE MIR 113 223 -45 4 1754 644 307 144 19 chr3 153316586 153317449 -6282334 + L1MC3 LINE L1 6476 7463 -322 4 1754 2302 84 51 0 chr3 153317470 153317781 -6282002 - ORR1A2 LTR MaLR 0 327 1 4 1754 447 68 0 0 chr3 153318624 153318683 -6281100 + (TAGA)n Simple_repeat Simple_repeat 1 59 0 4 1754 21 57 0 0 chr3 153318809 153318844 -6280939 + AT_rich Low_complexity Low_complexity 1 35 0 4 1754 374 330 0 48 chr3 153319237 153319361 -6280422 + RSINE1 SINE B4 47 164 -1 4 1754 245 233 0 0 chr3 153321399 153321442 -6278341 + MTEa LTR MaLR 36 78 -301 5 1754 241 313 15 0 chr3 153322491 153322558 -6277225 + B4 SINE B4 7 74 -218 5 1754 323 324 94 39 chr3 153323379 153323559 -6276224 + HAL1-3A_ME LINE L1 2250 2439 -419 5 1754 925 138 6 12 chr3 153323563 153323732 -6276051 + GA-rich Low_complexity Low_complexity 3 170 0 5 1754 243 0 0 0 chr3 153324198 153324225 -6275558 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 5 1754 630 218 8 0 chr3 153324362 153324486 -6275297 + ID_B1 SINE B4 80 204 -20 5 1754 234 308 37 37 chr3 153324390 153324498 -6275285 - YREP_Mm Unknown Unknown -1522 290 183 5 1754 414 0 0 0 chr3 153326553 153326599 -6273184 + (CA)n Simple_repeat Simple_repeat 2 47 0 5 1754 4700 35 0 0 chr3 153329079 153329618 -6270165 + L1Md_T LINE L1 6044 6582 0 5 1754 291 315 18 18 chr3 153329831 153329999 -6269784 + (TATG)n Simple_repeat Simple_repeat 4 171 0 5 1754 506 239 105 61 chr3 153330240 153330427 -6269356 - B3A SINE B2 -1 197 20 5 1754 231 260 104 19 chr3 153330433 153330539 -6269244 - PB1D10 SINE Alu -1 116 2 5 1754 226 176 39 0 chr3 153330563 153330614 -6269169 + (TG)n Simple_repeat Simple_repeat 2 54 0 5 1754 461 289 133 65 chr3 153330619 153330882 -6268901 - B4 SINE B4 -8 284 30 5 1754 239 226 0 19 chr3 153331234 153331288 -6268495 + GA-rich Low_complexity Low_complexity 3 55 0 5 1754 405 58 0 0 chr3 153331503 153331555 -6268228 + (CA)n Simple_repeat Simple_repeat 1 52 0 5 1754 287 268 24 12 chr3 153333422 153333505 -6266278 + B4A SINE B4 4 87 -205 5 1754 530 238 189 22 chr3 153333542 153333727 -6266056 + B3 SINE B2 1 216 0 5 1754 396 292 56 89 chr3 153334090 153334304 -6265479 - B4A SINE B4 0 292 86 5 1754 1243 55 12 6 chr3 153334778 153334941 -6264842 + B2_Mm2 SINE B2 1 164 -31 5 1754 759 22 0 0 chr3 153334948 153335037 -6264746 + (GAGAA)n Simple_repeat Simple_repeat 2 90 0 5 1754 720 229 228 8 chr3 153336831 153337099 -6262684 + MTEa LTR MaLR 36 362 -17 5 1754 206 282 12 25 chr3 153337371 153337451 -6262332 + GA-rich Low_complexity Low_complexity 3 81 0 5 1754 562 232 74 44 chr3 153338480 153338683 -6261100 - Charlie5 DNA MER1_type -4 2620 2412 5 1754 22 35 0 0 chr3 153338765 153338794 -6260989 + AT_rich Low_complexity Low_complexity 1 29 0 5 1754 279 0 0 0 chr3 153338822 153338853 -6260930 + (CA)n Simple_repeat Simple_repeat 1 31 0 5 1754 237 312 0 68 chr3 153339657 153339774 -6260009 - RLTR22_Mur LTR ERVK -434 1414 1306 5 1754 334 241 135 57 chr3 153339840 153339981 -6259802 + MIRc SINE MIR 81 232 -36 5 1754 368 361 41 7 chr3 153340287 153340432 -6259351 - MER5A1 DNA MER1_type 0 166 17 5 1754 196 247 105 12 chr3 153340454 153340540 -6259243 + L2b LINE L2 3262 3355 -20 5 1754 366 272 26 17 chr3 153341509 153341625 -6258158 + B4 SINE B4 174 290 -2 5 1754 229 272 49 0 chr3 153342355 153342432 -6257351 + MIRm SINE MIR 88 167 -101 5 1754 2495 134 79 8 chr3 153343001 153343392 -6256391 + MTC LTR MaLR 3 421 0 5 1754 1872 158 9 9 chr3 153343677 153343997 -6255786 - ORR1B2 LTR MaLR -8 359 40 5 1754 341 144 42 42 chr3 153344015 153344086 -6255697 - ORR1B2 LTR MaLR -302 77 1 5 1754 737 265 36 31 chr3 153344930 153345152 -6254631 + ID_B1 SINE B4 2 224 0 5 1754 23 0 0 0 chr3 153346779 153346802 -6252981 + AT_rich Low_complexity Low_complexity 1 23 0 5 1754 471 310 130 14 chr3 153347408 153347472 -6252311 + B4A SINE B4 2 77 -215 5 1754 261 0 0 0 chr3 153347472 153347501 -6252282 + (TA)n Simple_repeat Simple_repeat 1 29 0 5 1754 471 310 130 14 chr3 153347501 153347652 -6252131 + B4A SINE B4 78 241 -51 5 1754 485 263 8 0 chr3 153347649 153347767 -6252016 + RSINE1 SINE B4 12 130 -35 5 1754 420 71 0 0 chr3 153347768 153347824 -6251959 + (CA)n Simple_repeat Simple_repeat 1 56 0 5 1754 229 242 0 46 chr3 153347824 153347889 -6251894 + B4A SINE B4 231 292 0 5 1754 203 189 32 32 chr3 153347953 153348046 -6251737 + (CATA)n Simple_repeat Simple_repeat 2 94 0 5 1754 299 299 0 33 chr3 153348055 153348176 -6251607 + (CA)n Simple_repeat Simple_repeat 1 117 0 5 1754 428 0 19 0 chr3 153348176 153348228 -6251555 + (TTTG)n Simple_repeat Simple_repeat 3 55 0 5 1754 528 230 0 156 chr3 153348228 153348388 -6251395 - B1_Mur3 SINE Alu -12 137 3 5 1754 508 240 0 74 chr3 153348465 153348724 -6251059 + C-rich Low_complexity Low_complexity 1 239 0 5 1754 204 260 0 17 chr3 153348737 153348913 -6250870 + CT-rich Low_complexity Low_complexity 4 176 0 5 1754 211 227 0 72 chr3 153348961 153349113 -6250670 + C-rich Low_complexity Low_complexity 3 143 0 5 1754 324 111 0 0 chr3 153351484 153351538 -6248245 + (CA)n Simple_repeat Simple_repeat 2 55 0 5 1754 1156 146 97 5 chr3 153351654 153351861 -6247922 - URR1A DNA MER1_type 0 226 1 5 1754 189 0 0 0 chr3 153352798 153352819 -6246964 + (A)n Simple_repeat Simple_repeat 1 21 0 5 1754 388 237 11 17 chr3 153354007 153354183 -6245600 + (CATA)n Simple_repeat Simple_repeat 4 178 0 5 219 356 267 0 8 chr3 153354208 153354340 -6245443 + (TA)n Simple_repeat Simple_repeat 1 131 0 5 1755 203 267 12 0 chr3 153354354 153354440 -6245343 + (CA)n Simple_repeat Simple_repeat 2 88 0 5 1755 743 195 0 8 chr3 153355061 153355185 -6244598 + RSINE1 SINE B4 5 127 -38 5 1755 200 139 28 0 chr3 153355826 153355862 -6243921 + (TTG)n Simple_repeat Simple_repeat 2 38 0 5 1755 579 284 47 42 chr3 153357370 153357583 -6242200 - B3 SINE B2 -2 214 1 5 1755 976 194 68 59 chr3 153358508 153358727 -6241056 + URR1B DNA MER1_type 1 221 -4 5 1755 423 0 0 0 chr3 153359042 153359089 -6240694 + (TG)n Simple_repeat Simple_repeat 2 48 0 5 1755 791 258 33 0 chr3 153359198 153359380 -6240403 + B3A SINE B2 11 198 0 5 1755 287 289 86 68 chr3 153359506 153359669 -6240114 + MLT1C LTR MaLR 277 442 -25 5 1755 599 273 166 52 chr3 153359747 153360202 -6239581 + L1MEg LINE L1 838 1360 -4724 5 1755 207 0 0 0 chr3 153360202 153360225 -6239558 + (TAA)n Simple_repeat Simple_repeat 2 24 0 5 1755 599 273 166 52 chr3 153360225 153360383 -6239400 + L1MEg LINE L1 1361 1520 -4564 5 1755 267 311 108 0 chr3 153360616 153360764 -6239019 + L1MC1 LINE L1 6097 6260 -73 5 1755 504 286 14 21 chr3 153361870 153362013 -6237770 + B1F SINE Alu 1 142 -7 5 1755 187 190 17 17 chr3 153362035 153362094 -6237689 + GA-rich Low_complexity Low_complexity 4 62 0 5 1755 1275 34 0 0 chr3 153362356 153362502 -6237281 + B1_Mus2 SINE Alu 2 147 0 5 1755 25 0 0 0 chr3 153362506 153362531 -6237252 + AT_rich Low_complexity Low_complexity 1 25 0 5 1755 713 280 53 0 chr3 153363029 153363218 -6236565 + ID_B1 SINE B4 5 203 -21 5 1755 320 344 47 16 chr3 153363276 153363490 -6236293 + MIR SINE MIR 4 221 -47 5 1755 239 368 63 10 chr3 153363895 153364101 -6235682 - MER34A LTR ERV1 -97 490 274 5 1755 334 350 0 25 chr3 153364183 153364303 -6235480 - MER34A LTR ERV1 -434 137 21 5 1755 820 274 14 41 chr3 153364414 153364635 -6235148 + ID_B1 SINE B4 2 216 -8 5 1755 407 185 16 32 chr3 153364645 153364768 -6235015 + GA-rich Low_complexity Low_complexity 4 124 0 5 1755 646 247 44 6 chr3 153365287 153365446 -6234337 - RMER5 LTR ERV1 -20 514 350 5 1755 889 153 12 6 chr3 153366470 153366641 -6233142 + GA-rich Low_complexity Low_complexity 3 174 0 5 1755 192 77 0 0 chr3 153366658 153366684 -6233099 + (CAGA)n Simple_repeat Simple_repeat 3 28 0 5 1755 477 133 0 0 chr3 153366745 153366843 -6232940 + (TC)n Simple_repeat Simple_repeat 2 99 0 5 1755 405 0 0 0 chr3 153366843 153366888 -6232895 + (CA)n Simple_repeat Simple_repeat 1 45 0 5 1755 408 20 0 0 chr3 153367125 153367174 -6232609 + (TG)n Simple_repeat Simple_repeat 2 50 0 5 1755 915 198 31 15 chr3 153367660 153367855 -6231928 + B3 SINE B2 3 200 -16 5 1755 1161 113 1 0 chr3 153367856 153368522 -6231261 + (TG)n Simple_repeat Simple_repeat 1 666 0 5 1755 1660 210 60 27 chr3 153369390 153369757 -6230026 + RLTR14 LTR ERV1 1 379 -3 5 1755 274 284 24 12 chr3 153369921 153370003 -6229780 + MTC LTR MaLR 42 124 -255 5 1755 484 298 64 91 chr3 153369941 153370363 -6229420 + MT2A LTR ERVL 62 556 0 5 1755 272 250 112 0 chr3 153371580 153371660 -6228123 - L2 LINE L2 -549 2870 2782 5 1755 1471 264 103 70 chr3 153372142 153373188 -6226595 + RMER1A Other Other 2 812 -218 5 1755 293 118 0 19 chr3 153373194 153373210 -6226573 + (GGA)n Simple_repeat Simple_repeat 1 16 0 5 1755 1017 145 0 0 chr3 153373210 153373389 -6226394 + (GAA)n Simple_repeat Simple_repeat 1 179 0 5 1755 293 118 0 19 chr3 153373389 153373424 -6226359 + (GGA)n Simple_repeat Simple_repeat 2 36 0 5 1755 1187 94 0 6 chr3 153373428 153373609 -6226174 + (GAA)n Simple_repeat Simple_repeat 1 180 0 5 1755 643 188 246 0 chr3 153373609 153373747 -6226036 + MTC LTR MaLR 198 369 -52 5 1755 314 133 0 26 chr3 153373862 153373939 -6225844 + (CAGA)n Simple_repeat Simple_repeat 2 76 0 5 1755 342 67 0 0 chr3 153374446 153374491 -6225292 + (TTCC)n Simple_repeat Simple_repeat 4 48 0 5 1755 574 261 31 0 chr3 153374492 153374622 -6225161 - B1F SINE Alu -15 134 1 5 1755 214 188 0 20 chr3 153374845 153374894 -6224889 + CT-rich Low_complexity Low_complexity 4 51 0 5 1755 947 35 0 0 chr3 153375703 153375816 -6223967 + L1Md_F2 LINE L1 5474 5586 -297 5 1755 8037 47 13 7 chr3 153375816 153376805 -6222978 + L1Md_F2 LINE L1 5587 6581 -1 5 1755 214 350 19 39 chr3 153377571 153377675 -6222108 + MER5A DNA MER1_type 61 162 -27 5 1755 446 312 81 50 chr3 153377926 153378186 -6221597 - MER58B DNA MER1_type -3 338 71 5 1755 605 275 68 17 chr3 153379206 153379443 -6220340 + Charlie5 DNA MER1_type 2328 2576 -48 5 1755 220 214 24 0 chr3 153379464 153379506 -6220277 + PB1D10 SINE Alu 21 63 -54 5 1755 367 192 0 40 chr3 153379532 153379608 -6220175 + RMER15 LTR ERVL 414 486 -89 5 1755 241 244 32 8 chr3 153379658 153379782 -6220001 + G-rich Low_complexity Low_complexity 5 131 0 5 1755 1538 141 130 58 chr3 153380367 153380713 -6219070 + RMER15 LTR ERVL 1 371 -204 6 1755 22 35 0 0 chr3 153381477 153381506 -6218277 + AT_rich Low_complexity Low_complexity 1 29 0 6 1755 204 216 0 0 chr3 153381517 153381568 -6218215 + (TA)n Simple_repeat Simple_repeat 1 51 0 6 1755 258 263 10 21 chr3 153381646 153381743 -6218040 + CT-rich Low_complexity Low_complexity 3 98 0 6 1755 375 23 0 0 chr3 153382286 153382330 -6217453 + (CA)n Simple_repeat Simple_repeat 2 45 0 6 1755 291 28 0 0 chr3 153382518 153382554 -6217229 + (TC)n Simple_repeat Simple_repeat 1 36 0 6 1755 207 0 0 0 chr3 153382559 153382582 -6217201 + (CA)n Simple_repeat Simple_repeat 1 23 0 6 1755 185 326 169 49 chr3 153384101 153384285 -6215498 - MIRc SINE MIR -54 214 9 6 1755 448 282 188 21 chr3 153384756 153384967 -6214816 + MER34A LTR ERV1 158 408 -163 6 1755 1993 204 57 27 chr3 153384967 153385374 -6214409 - MTD LTR MaLR 0 419 1 6 1755 300 385 33 0 chr3 153386392 153386514 -6213269 - MIRb SINE MIR -80 188 63 6 1755 1768 147 214 14 chr3 153389476 153389827 -6209956 + MTC LTR MaLR 1 421 0 6 1755 286 271 33 66 chr3 153389897 153389988 -6209795 - RSINE1 SINE B4 -76 89 2 6 1755 438 20 0 0 chr3 153389989 153390040 -6209743 + (TTCA)n Simple_repeat Simple_repeat 4 54 0 6 1755 619 183 146 39 chr3 153390235 153390440 -6209343 + Lx9 LINE L1 7417 7643 -1 6 1755 219 69 0 0 chr3 153390463 153390492 -6209291 + (GGA)n Simple_repeat Simple_repeat 2 30 0 6 1755 723 64 18 9 chr3 153390511 153390622 -6209161 + (TC)n Simple_repeat Simple_repeat 1 112 0 6 1755 890 288 114 44 chr3 153391055 153391132 -6208651 - B4A SINE B4 -1 291 226 6 1755 777 136 257 33 chr3 153391132 153391315 -6208468 - URR1A DNA MER1_type 0 226 3 6 1755 890 288 114 44 chr3 153391315 153391509 -6208274 - B4A SINE B4 -67 225 1 6 1755 414 184 13 13 chr3 153392120 153392188 -6207595 + MTEa LTR MaLR 10 77 -302 6 1755 1044 144 23 0 chr3 153392188 153392361 -6207422 - URR1B DNA MER1_type 0 225 49 6 1755 950 290 36 42 chr3 153392379 153392685 -6207098 + MTEa LTR MaLR 76 379 0 6 1755 1905 216 30 22 chr3 153392889 153393296 -6206487 - MTD LTR MaLR -9 410 1 6 1755 22 0 0 0 chr3 153393670 153393692 -6206091 + AT_rich Low_complexity Low_complexity 1 22 0 6 1755 459 92 0 0 chr3 153393784 153393849 -6205934 + (TCCCC)n Simple_repeat Simple_repeat 2 66 0 6 1755 960 229 48 5 chr3 153394079 153394285 -6205498 - B3 SINE B2 0 216 2 6 1755 1026 289 33 36 chr3 153395161 153395491 -6204292 - MER58B DNA MER1_type 0 341 13 6 1755 25 31 0 0 chr3 153395751 153395783 -6204000 + AT_rich Low_complexity Low_complexity 1 32 0 6 1755 405 163 0 0 chr3 153396247 153396339 -6203444 + (TG)n Simple_repeat Simple_repeat 1 92 0 6 1755 528 205 0 0 chr3 153396451 153396602 -6203181 + (TG)n Simple_repeat Simple_repeat 1 151 0 6 1755 228 312 0 0 chr3 153396624 153396704 -6203079 + (TG)n Simple_repeat Simple_repeat 1 80 0 6 1755 189 0 0 0 chr3 153396721 153396742 -6203041 + (TG)n Simple_repeat Simple_repeat 1 21 0 6 1755 400 236 129 78 chr3 153396742 153396935 -6202848 - B3 SINE B2 -13 203 1 6 1755 198 0 0 0 chr3 153396999 153397021 -6202762 + (CAAAAA)n Simple_repeat Simple_repeat 2 23 0 6 1755 504 0 0 0 chr3 153399031 153399087 -6200696 + (TG)n Simple_repeat Simple_repeat 2 57 0 6 1755 452 18 0 17 chr3 153399692 153399750 -6200033 + (TC)n Simple_repeat Simple_repeat 1 57 0 6 1755 760 293 102 25 chr3 153400430 153400868 -6198915 - Lx8 LINE L1 -2 7471 6959 6 1755 404 252 45 45 chr3 153400941 153401053 -6198730 + PB1D10 SINE Alu 2 113 -4 6 1755 210 264 61 71 chr3 153401967 153402065 -6197718 + L3 LINE CR1 4270 4366 -123 6 1755 462 314 49 25 chr3 153402540 153402703 -6197080 - MER58B DNA MER1_type 0 341 175 6 1755 466 284 110 28 chr3 153402844 153402989 -6196794 + RSINE1 SINE B4 3 159 -6 6 1755 917 245 29 0 chr3 153402987 153403191 -6196592 + ID_B1 SINE B4 6 215 -9 6 1755 369 294 65 42 chr3 153403753 153403987 -6195796 - MLT1H LTR MaLR -304 251 37 6 1755 320 228 301 0 chr3 153404112 153404235 -6195548 + ID_B1 SINE B4 1 160 -64 6 1755 222 269 105 21 chr3 153404175 153404270 -6195513 + PB1D7 SINE Alu 18 120 0 6 1755 320 251 244 26 chr3 153404812 153405041 -6194742 + B4A SINE B4 5 283 -9 6 1755 518 290 137 23 chr3 153405187 153405487 -6194296 - L1ME1 LINE L1 -63 6116 5783 6 1755 2258 199 64 39 chr3 153406080 153406639 -6193144 - Lx5 LINE L1 -7 7043 6471 6 1755 235 194 0 69 chr3 153407228 153407300 -6192483 - RSINE1 SINE B4 0 165 99 6 1755 486 0 0 0 chr3 153407552 153407606 -6192177 + (TG)n Simple_repeat Simple_repeat 1 54 0 6 1755 211 289 186 24 chr3 153407763 153407887 -6191896 + MIR3 SINE MIR 28 171 -37 6 1755 181 313 12 123 chr3 153407812 153407983 -6191800 - MIRm SINE MIR -90 186 35 6 1755 1836 168 58 19 chr3 153408786 153409150 -6190633 - RMER5 LTR ERV1 -8 526 149 6 1755 283 167 74 0 chr3 153409181 153409235 -6190548 - RMER5 LTR ERV1 -456 78 21 6 1755 3932 169 8 18 chr3 153409600 153410310 -6189473 + RLTR22_Mur LTR ERVK 1 703 -1145 6 1755 4937 45 0 111 chr3 153410451 153411169 -6188614 + L1Md_F2 LINE L1 5933 6570 -12 6 1755 456 267 60 20 chr3 153411418 153411567 -6188216 + RMER12 LTR ERVK 1106 1260 -62 6 1755 218 255 239 39 chr3 153411746 153411901 -6187882 + MIRb SINE MIR 72 257 -11 6 1755 3182 49 5 0 chr3 153412835 153413224 -6186559 - L1_Mus2 LINE L1 0 6566 6176 6 1755 701 240 88 39 chr3 153413510 153413714 -6186069 + B3 SINE B2 3 216 0 6 1755 1090 134 52 11 chr3 153414256 153414430 -6185353 - RMER19B LTR ERVK -20 882 702 6 1755 1756 175 125 27 chr3 153414419 153414795 -6184988 - RMER19B LTR ERVK -315 587 175 6 1755 4276 91 108 21 chr3 153414834 153415163 -6184620 - RMER17A LTR ERVK -15 736 411 6 1755 850 43 36 30 chr3 153415163 153415329 -6184454 + (GGAGA)n Simple_repeat Simple_repeat 2 168 0 6 1755 4276 91 108 21 chr3 153415329 153415452 -6184331 - RMER17A LTR ERVK -341 410 220 6 1755 3521 15 8 0 chr3 153415452 153415845 -6183938 + MTA_Mm LTR MaLR 1 396 0 6 1755 4276 91 108 21 chr3 153415845 153416068 -6183715 - RMER17A LTR ERVK -532 219 2 6 1755 687 269 6 0 chr3 153416068 153416194 -6183589 - RMER19B LTR ERVK -720 182 56 6 1755 688 186 62 0 chr3 153416172 153416301 -6183482 - RMER19B LTR ERVK -765 137 1 6 1755 770 264 75 75 chr3 153417038 153417414 -6182369 - MTE2a LTR MaLR 0 379 4 6 1755 280 200 27 67 chr3 153417433 153417508 -6182275 + B4A SINE B4 217 288 -4 6 1755 201 183 48 9 chr3 153417512 153417617 -6182166 + (CA)n Simple_repeat Simple_repeat 2 110 0 6 1755 217 187 112 16 chr3 153417617 153417708 -6182075 + (CATATA)n Simple_repeat Simple_repeat 6 105 0 6 1755 1458 100 308 0 chr3 153417708 153417958 -6181825 - ORR1A2 LTR MaLR 0 327 1 6 1755 217 187 112 16 chr3 153417958 153417991 -6181792 + (CATATA)n Simple_repeat Simple_repeat 4 39 0 6 1755 2672 126 30 51 chr3 153418711 153419203 -6180580 + RLTR45 LTR ERVK 1 482 0 6 1755 271 247 129 0 chr3 153419470 153419563 -6180220 - MLT1L LTR MaLR -3 607 503 6 1755 241 203 174 0 chr3 153419901 153419970 -6179813 - MLT1L LTR MaLR -526 84 4 6 1755 544 250 169 84 chr3 153420068 153420392 -6179391 - MTEa LTR MaLR -2 377 49 6 1755 3039 65 3 3 chr3 153421721 153422110 -6177673 + MTA_Mm LTR MaLR 8 396 0 6 1755 324 278 38 38 chr3 153422110 153422241 -6177542 - ORR1E LTR MaLR -224 135 5 6 1755 334 0 0 161 chr3 153422943 153423117 -6176666 + (CGAGG)n Simple_repeat Simple_repeat 1 146 0 6 1755 299 216 40 26 chr3 153423118 153423194 -6176589 + PB1D9 SINE Alu 42 118 -2 6 1755 1036 271 58 37 chr3 153423660 153423957 -6175826 + MTEa LTR MaLR 3 309 -70 6 1755 3074 115 163 21 chr3 153423957 153424490 -6175293 - RMER19C LTR ERVK -2 609 1 6 1755 1036 271 58 37 chr3 153424490 153424518 -6175265 + MTEa LTR MaLR 310 335 -44 6 1755 449 272 41 47 chr3 153424723 153424893 -6174890 + B3A SINE B2 6 174 -24 6 1755 399 127 0 0 chr3 153424918 153424981 -6174802 + (CA)n Simple_repeat Simple_repeat 2 64 0 6 1755 632 200 0 65 chr3 153427063 153427202 -6172581 + B1F SINE Alu 11 140 -9 6 1755 385 259 83 0 chr3 153428327 153428435 -6171348 - PB1D10 SINE Alu 0 117 1 6 1755 647 289 7 0 chr3 153428774 153428916 -6170867 - B1_Mur1 SINE Alu -1 148 6 6 1755 216 86 0 0 chr3 153428948 153428983 -6170800 + (CA)n Simple_repeat Simple_repeat 2 36 0 6 1755 260 250 28 0 chr3 153429531 153429603 -6170180 - ID4 SINE ID -9 74 1 6 1755 805 224 102 25 chr3 153429755 153429952 -6169831 + B3 SINE B2 4 215 -1 6 1755 1048 318 72 39 chr3 153430543 153431139 -6168644 + L1_Mur3 LINE L1 4939 5554 -326 6 1755 312 295 49 82 chr3 153431197 153431319 -6168464 + RMER15 LTR ERVL 45 162 -413 6 1755 843 309 19 15 chr3 153431319 153431588 -6168195 + RMER15 LTR ERVL 291 560 -15 6 1755 322 317 101 31 chr3 153431615 153431843 -6167940 + L1_Rod LINE L1 5532 5775 -72 6 1755 686 260 65 0 chr3 153431948 153432102 -6167681 + RSINE1 SINE B4 2 165 0 6 1755 576 154 0 0 chr3 153432838 153432942 -6166841 + G-rich Low_complexity Low_complexity 2 105 0 6 1755 832 134 0 32 chr3 153432957 153433094 -6166689 + G-rich Low_complexity Low_complexity 1 135 0 6 1755 993 150 0 0 chr3 153433094 153433274 -6166509 + (GGAGA)n Simple_repeat Simple_repeat 1 180 0 6 1755 832 194 15 34 chr3 153433274 153433408 -6166375 + G-rich Low_complexity Low_complexity 1 131 0 6 1755 21 0 0 0 chr3 153433437 153433458 -6166325 + GC_rich Low_complexity Low_complexity 1 21 0 6 1755 228 306 85 50 chr3 153433980 153434121 -6165662 - LTR16D1 LTR ERVL -208 467 322 6 1755 414 0 0 0 chr3 153434732 153434778 -6165005 + (GA)n Simple_repeat Simple_repeat 1 46 0 6 1755 202 254 42 56 chr3 153435058 153435129 -6164654 + L2 LINE L2 2009 2078 -1341 6 1755 221 309 239 8 chr3 153435597 153435848 -6163935 - L3 LINE CR1 -80 4409 4101 6 1755 971 243 9 0 chr3 153435904 153436118 -6163665 + ID_B1 SINE B4 2 217 -7 6 1755 230 319 58 41 chr3 153436997 153437118 -6162665 - L3 LINE CR1 -908 3581 3459 6 1755 244 226 19 0 chr3 153437282 153437335 -6162448 - MTEb LTR MaLR 0 379 326 6 1755 678 313 105 4 chr3 153437333 153437599 -6162184 + MTE2b LTR MaLR 19 311 -68 6 1755 526 280 59 73 chr3 153437608 153437812 -6161971 - MTEb LTR MaLR -26 353 153 6 1755 266 217 0 0 chr3 153437834 153437880 -6161903 - MTEb LTR MaLR -332 47 2 6 1755 237 289 52 45 chr3 153437882 153438016 -6161767 - L1MC3 LINE L1 -1740 6045 5911 6 1755 2237 182 71 44 chr3 153438016 153438351 -6161432 + RMER20B LTR ERVK 91 423 -204 6 1755 3270 89 6 41 chr3 153438351 153438843 -6160940 - IAPLTR2_Mm LTR ERVK 0 475 1 7 1755 2237 182 71 44 chr3 153438843 153439030 -6160753 + RMER20B LTR ERVK 424 627 0 6 1755 198 279 60 111 chr3 153439643 153439760 -6160023 - MIRb SINE MIR -104 164 54 7 1755 459 0 0 0 chr3 153440902 153440953 -6158830 + (TC)n Simple_repeat Simple_repeat 2 52 0 7 1755 21 0 0 0 chr3 153441353 153441374 -6158409 + AT_rich Low_complexity Low_complexity 1 21 0 7 1755 268 326 56 0 chr3 153441779 153441868 -6157915 + ID_B1 SINE B4 83 176 -48 7 1755 281 297 88 0 chr3 153441790 153441881 -6157902 + PB1D10 SINE Alu 13 111 -6 7 1755 519 267 8 8 chr3 153442276 153442397 -6157386 + ID_B1 SINE B4 101 221 -3 7 1755 182 314 79 34 chr3 153442538 153442627 -6157156 - MIRm SINE MIR -19 257 165 7 1755 354 45 0 0 chr3 153442695 153442739 -6157044 + (CAAAA)n Simple_repeat Simple_repeat 3 46 0 7 1755 309 91 50 83 chr3 153442815 153442875 -6156908 - HAL1-3A_ME LINE L1 -825 2033 1976 7 1755 216 200 0 0 chr3 153442875 153442930 -6156853 + (TG)n Simple_repeat Simple_repeat 1 55 0 7 1755 258 259 0 69 chr3 153442996 153443083 -6156700 - B4 SINE B4 -211 81 1 7 1755 485 329 0 0 chr3 153443320 153443487 -6156296 + (CA)n Simple_repeat Simple_repeat 2 168 0 7 1755 890 247 4 127 chr3 153443774 153444034 -6155749 + B4A SINE B4 3 230 -62 7 1755 294 95 0 0 chr3 153446219 153446261 -6153522 + (CA)n Simple_repeat Simple_repeat 2 43 0 7 1755 1062 275 73 14 chr3 153447099 153447453 -6152330 + MTE2b LTR MaLR 2 376 -3 7 1755 213 39 0 0 chr3 153447631 153447657 -6152126 + (CCA)n Simple_repeat Simple_repeat 3 28 0 7 1755 316 256 23 11 chr3 153447911 153447998 -6151785 + Charlie14a DNA MER1_type 104 191 -973 7 1755 1191 54 0 20 chr3 153448001 153448151 -6151632 + B1_Mus1 SINE Alu 2 148 0 7 1755 368 40 20 0 chr3 153448170 153448220 -6151563 + (GA)n Simple_repeat Simple_repeat 2 52 0 7 1755 1179 94 0 0 chr3 153448220 153448400 -6151383 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 7 1755 619 231 33 0 chr3 153448414 153448535 -6151248 + B3A SINE B2 14 138 -60 7 1755 253 200 21 43 chr3 153448535 153448676 -6151107 + GA-rich Low_complexity Low_complexity 2 139 0 7 1755 575 279 109 45 chr3 153449049 153449315 -6150468 - B4 SINE B4 -7 285 3 7 1755 773 298 85 69 chr3 153449343 153449655 -6150128 - Charlie2b DNA MER1_type -198 2584 2268 7 1755 1151 191 19 5 chr3 153449655 153449860 -6149923 - B3 SINE B2 -8 208 1 7 1755 773 298 85 69 chr3 153449860 153449933 -6149850 - Charlie2b DNA MER1_type -515 2267 2211 7 1755 414 0 0 0 chr3 153449933 153449979 -6149804 + (TA)n Simple_repeat Simple_repeat 2 47 0 7 1755 773 298 85 69 chr3 153449979 153450155 -6149628 - Charlie2b DNA MER1_type -572 2210 2014 7 1755 301 244 111 0 chr3 153450302 153450392 -6149391 - Charlie2b DNA MER1_type -964 1818 1719 7 1755 258 173 39 0 chr3 153450986 153451038 -6148745 + B3 SINE B2 1 54 -162 7 1755 396 40 0 0 chr3 153451127 153451177 -6148606 + (GA)n Simple_repeat Simple_repeat 1 50 0 7 1755 257 233 186 0 chr3 153451197 153451283 -6148500 - Charlie2b DNA MER1_type -1855 927 826 7 1755 297 236 62 62 chr3 153451311 153451424 -6148359 - B3A SINE B2 0 198 86 7 1755 234 289 0 19 chr3 153451886 153451939 -6147844 - B3A SINE B2 -108 90 39 7 1755 244 200 25 0 chr3 153452570 153452650 -6147133 + (TA)n Simple_repeat Simple_repeat 2 83 0 7 1755 664 132 105 0 chr3 153452659 153452773 -6147010 - B1_Mus2 SINE Alu 0 147 22 7 1755 218 185 55 18 chr3 153452807 153452862 -6146921 + ID4_ SINE ID 1 57 -26 7 1755 1836 228 74 19 chr3 153453315 153453794 -6145989 + Lx6 LINE L1 6457 7364 -96 7 1755 417 20 0 0 chr3 153453794 153453844 -6145939 + (TG)n Simple_repeat Simple_repeat 2 51 0 7 1755 1836 216 71 18 chr3 153453844 153453924 -6145859 + Lx6 LINE L1 7365 7434 -26 7 1755 189 74 0 0 chr3 153454120 153454147 -6145636 + (TTCCC)n Simple_repeat Simple_repeat 1 27 0 7 1755 667 284 53 29 chr3 153454544 153454751 -6145032 - ID_B1 SINE B4 -12 212 1 7 1755 1321 194 91 96 chr3 153455588 153456005 -6143778 + Lx9 LINE L1 7230 7644 0 7 1755 646 282 114 59 chr3 153456019 153456210 -6143573 + B4A SINE B4 4 208 -84 7 1755 933 71 0 0 chr3 153456210 153456336 -6143447 + (GA)n Simple_repeat Simple_repeat 1 126 0 7 1755 646 282 114 59 chr3 153456336 153456381 -6143402 + B4A SINE B4 209 253 -39 7 1755 408 254 209 9 chr3 153458557 153458772 -6141011 + MIR SINE MIR 5 262 0 7 1755 410 131 71 0 chr3 153459113 153459197 -6140586 - RMER1B Other Other -6 1060 971 7 1755 1309 158 97 55 chr3 153459197 153459486 -6140297 + RLTR20C LTR ERVK 4 304 -230 7 1755 621 159 178 22 chr3 153459493 153459553 -6140230 + RLTR20C LTR ERVK 423 489 -89 7 1755 426 85 0 0 chr3 153459553 153459612 -6140171 + (TG)n Simple_repeat Simple_repeat 2 60 0 7 1755 621 159 178 22 chr3 153459612 153459686 -6140097 + RLTR20C LTR ERVK 490 578 0 7 1755 1992 161 40 17 chr3 153459697 153460044 -6139739 - RMER1B Other Other -178 888 534 7 1755 566 38 46 19 chr3 153460221 153460329 -6139454 + (TA)n Simple_repeat Simple_repeat 1 111 0 7 1755 225 0 0 0 chr3 153460329 153460353 -6139430 + (GA)n Simple_repeat Simple_repeat 2 26 0 7 1755 394 259 0 0 chr3 153460481 153460562 -6139221 + ID4 SINE ID 2 82 -1 7 1755 220 308 0 0 chr3 153461653 153461705 -6138078 + (TATATG)n Simple_repeat Simple_repeat 5 56 0 7 1755 300 175 0 0 chr3 153461705 153461768 -6138015 + (TG)n Simple_repeat Simple_repeat 2 64 0 7 1755 266 350 113 5 chr3 153461983 153462178 -6137605 - L2 LINE L2 -951 2468 2253 7 1755 271 343 45 0 chr3 153462767 153462889 -6136894 - L2c LINE L2 -25 3350 3220 7 1755 943 50 173 0 chr3 153463633 153463772 -6136011 + B2_Mm2 SINE B2 2 164 -31 7 1755 483 18 0 0 chr3 153464427 153464483 -6135300 + (TC)n Simple_repeat Simple_repeat 1 56 0 7 1755 1150 185 46 0 chr3 153464817 153465012 -6134771 + B3 SINE B2 1 204 -12 7 1755 696 287 71 39 chr3 153465670 153465953 -6133830 - B4A SINE B4 0 292 1 7 1755 842 204 129 10 chr3 153466760 153466953 -6132830 + B3 SINE B2 1 216 0 7 1755 21 0 0 0 chr3 153466982 153467003 -6132780 + AT_rich Low_complexity Low_complexity 1 21 0 7 1755 4531 78 45 0 chr3 153468226 153468829 -6130954 - L1_Mus3 LINE L1 -1 6637 6008 7 1755 276 30 0 0 chr3 153468918 153468951 -6130832 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 7 1755 425 304 45 80 chr3 153468964 153469250 -6130533 + B4 SINE B4 3 278 -14 7 1755 281 227 35 138 chr3 153469750 153469837 -6129946 - B4 SINE B4 0 292 215 7 1755 595 283 6 65 chr3 153469850 153470020 -6129763 - B4 SINE B4 -69 223 64 7 1755 785 77 72 58 chr3 153470008 153470146 -6129637 - B1_Mus1 SINE Alu -1 147 8 7 1755 258 157 59 0 chr3 153470421 153470472 -6129311 - MIRc SINE MIR -135 133 80 7 1755 1857 147 141 0 chr3 153470473 153470814 -6128969 + ORR1B1 LTR MaLR 3 391 -3 7 1755 1410 53 26 16 chr3 153471856 153472017 -6127766 + B2_Mm1a SINE B2 1 160 -33 7 1755 243 0 0 0 chr3 153472017 153472044 -6127739 + (TAAA)n Simple_repeat Simple_repeat 3 29 0 7 1755 1410 53 26 16 chr3 153472044 153472072 -6127711 + B2_Mm1a SINE B2 161 192 -1 7 1755 396 239 0 0 chr3 153472450 153472539 -6127244 + MTEb LTR MaLR 1 89 -290 7 1755 240 284 30 66 chr3 153473046 153473212 -6126571 - L1M2 LINE L1 -2351 3792 3633 7 1755 529 265 121 18 chr3 153473346 153473511 -6126272 + B3A SINE B2 1 182 -16 7 1755 879 192 0 0 chr3 153473512 153473941 -6125842 + (CA)n Simple_repeat Simple_repeat 1 429 0 7 1755 370 260 88 53 chr3 153473943 153474026 -6125757 + L1M2 LINE L1 2949 3040 -3103 7 1755 207 0 0 0 chr3 153474026 153474049 -6125734 + (CAAAC)n Simple_repeat Simple_repeat 2 24 0 7 1755 370 260 88 53 chr3 153474049 153474339 -6125444 + L1M2 LINE L1 3041 3335 -2808 7 1755 1193 281 142 38 chr3 153474416 153475205 -6124578 + L1M2 LINE L1 3638 4508 -1635 7 1755 236 297 18 26 chr3 153475528 153475642 -6124141 + L1MA5 LINE L1 6168 6280 -20 7 1755 498 210 29 47 chr3 153475646 153475816 -6123967 + L1M2 LINE L1 3838 4004 -2139 7 1755 410 300 66 35 chr3 153476053 153476281 -6123502 + L1M2 LINE L1 5069 5303 -840 7 1755 221 289 26 0 chr3 153476373 153476449 -6123334 + BC1_Mm scRNA scRNA 16 93 -59 7 1755 378 329 65 33 chr3 153476699 153476913 -6122870 - RMER15 LTR ERVL -11 564 344 7 1755 349 290 72 28 chr3 153477270 153477451 -6122332 + L1MA5 LINE L1 6103 6291 0 7 1755 387 0 0 0 chr3 153478161 153478204 -6121579 + (CA)n Simple_repeat Simple_repeat 2 44 0 7 1755 490 276 56 76 chr3 153478516 153478584 -6121199 - MTEb LTR MaLR 0 379 319 7 1755 6241 175 63 11 chr3 153478584 153479785 -6119998 - Lx5 LINE L1 -8 7042 5779 7 1755 490 276 56 76 chr3 153479785 153479967 -6119816 - MTEb LTR MaLR -61 318 134 7 1755 1560 215 45 123 chr3 153481278 153481724 -6118059 - RMER19B LTR ERVK -491 411 1 7 1755 265 367 55 42 chr3 153481809 153481974 -6117809 + MER82 DNA MER2_type 2 168 -485 7 1755 546 16 0 0 chr3 153482002 153482065 -6117718 + (TAGA)n Simple_repeat Simple_repeat 4 66 0 7 1755 553 261 28 113 chr3 153482073 153482392 -6117391 + B4A SINE B4 1 292 0 7 1755 189 0 0 0 chr3 153482427 153482448 -6117335 + (CA)n Simple_repeat Simple_repeat 2 22 0 7 1755 821 313 70 9 chr3 153482472 153482814 -6116969 + MER82 DNA MER2_type 214 576 -77 7 1755 760 248 192 0 chr3 153483085 153483283 -6116500 - B4 SINE B4 -54 238 3 7 1755 482 206 0 30 chr3 153484922 153485022 -6114761 + B1_Mur4 SINE Alu 34 130 -20 7 1755 243 79 0 0 chr3 153485133 153485171 -6114612 + (T)n Simple_repeat Simple_repeat 1 38 0 7 219 825 350 88 31 chr3 153485275 153485694 -6114089 - MTEa-int LTR MaLR -611 969 527 7 1756 403 294 89 121 chr3 153485697 153485945 -6113838 - MTEa-int LTR MaLR -1340 240 1 7 1756 463 301 58 93 chr3 153485953 153486158 -6113625 - MTEa LTR MaLR -12 367 156 7 1756 210 256 0 69 chr3 153486704 153486834 -6112949 + (CA)n Simple_repeat Simple_repeat 1 121 0 7 1756 194 329 36 24 chr3 153487543 153487627 -6112156 + MIR SINE MIR 119 203 -59 7 1756 325 200 39 52 chr3 153487651 153487804 -6111979 + (CATA)n Simple_repeat Simple_repeat 4 154 0 7 1756 780 266 54 0 chr3 153488267 153488451 -6111332 + ID_B1 SINE B4 6 199 -25 7 1756 1007 294 17 28 chr3 153488537 153488824 -6110959 - B4A SINE B4 0 292 9 7 1756 183 42 0 0 chr3 153489056 153489080 -6110703 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 7 1756 566 100 75 0 chr3 153489349 153489445 -6110338 + B1_Mus1 SINE Alu 1 120 0 7 1756 450 36 0 0 chr3 153489529 153489585 -6110198 + (TG)n Simple_repeat Simple_repeat 2 57 0 7 1756 315 249 67 65 chr3 153489924 153490134 -6109649 - RLTR11B LTR ERVK -25 503 232 7 1756 930 256 26 93 chr3 153490168 153490470 -6109313 - RLTR11B LTR ERVK -171 282 1 7 1756 2466 155 7 35 chr3 153490608 153490925 -6108858 - MTC LTR MaLR -2 419 113 7 1756 1129 59 0 0 chr3 153490925 153491061 -6108722 + B1_Mus2 SINE Alu 2 137 -10 8 1756 367 19 39 0 chr3 153491061 153491113 -6108670 + (CAAAA)n Simple_repeat Simple_repeat 2 55 0 8 1756 2466 155 7 35 chr3 153491113 153491222 -6108561 - MTC LTR MaLR -309 112 5 7 1756 796 252 158 25 chr3 153491476 153491793 -6107990 - ORR1E LTR MaLR 0 359 1 8 1756 303 167 141 22 chr3 153492140 153492232 -6107551 - MIR SINE MIR -81 181 79 8 1756 1666 84 12 4 chr3 153492795 153493035 -6106748 - L1_Mus3 LINE L1 0 6638 6397 8 1756 3261 73 136 2 chr3 153493035 153493541 -6106242 + L1_Mus3 LINE L1 5839 6412 -226 8 1756 1688 31 0 0 chr3 153493587 153493778 -6106005 + B2_Mm1a SINE B2 2 192 -1 8 1756 1609 26 5 20 chr3 153493778 153493973 -6105810 + B2_Mm1t SINE B2 2 193 0 8 1756 1237 230 205 41 chr3 153494629 153495064 -6104719 + RMER1B Other Other 44 549 -517 8 1756 2486 216 111 61 chr3 153495087 153496034 -6103749 + RMER1A Other Other 4 1062 -4 8 1756 787 253 68 64 chr3 153497052 153497288 -6102495 - B4A SINE B4 0 292 56 8 1756 223 301 143 50 chr3 153497431 153497571 -6102212 + MIRb SINE MIR 2 154 -114 8 1756 212 191 24 0 chr3 153497591 153497633 -6102150 + (TATG)n Simple_repeat Simple_repeat 4 46 0 8 1756 404 271 50 42 chr3 153497695 153497861 -6101922 + B3A SINE B2 1 187 -6 8 1756 264 277 74 118 chr3 153498547 153498682 -6101101 - MIRm SINE MIR -22 254 126 8 1756 2468 156 82 11 chr3 153498741 153499181 -6100602 + RMER1A Other Other 403 873 -157 8 1756 185 35 0 65 chr3 153499181 153499212 -6100571 + (TTTG)n Simple_repeat Simple_repeat 4 32 0 8 1756 2394 188 137 13 chr3 153499212 153499305 -6100478 + RMER1B Other Other 947 1063 -3 8 1756 244 214 36 0 chr3 153500799 153500855 -6098928 + GA-rich Low_complexity Low_complexity 1 58 0 1 1756 299 132 15 0 chr3 153501091 153501159 -6098624 + (GA)n Simple_repeat Simple_repeat 1 69 0 2 1756 456 130 0 0 chr3 153501154 153501246 -6098537 + (TG)n Simple_repeat Simple_repeat 2 93 0 3 1756 1752 123 8 185 chr3 153501841 153502152 -6097631 + ORR1A4 LTR MaLR 1 285 -44 4 1756 1727 16 0 0 chr3 153502152 153502345 -6097438 + B2_Mm1a SINE B2 1 193 0 5 1756 1752 123 8 185 chr3 153502345 153502433 -6097350 + ORR1A4 LTR MaLR 286 329 0 4 1756 582 284 76 11 chr3 153502580 153502765 -6097018 + ID_B1 SINE B4 7 203 -21 6 1756 512 214 0 19 chr3 153503788 153503893 -6095890 + B4A SINE B4 182 284 -8 7 1756 318 67 0 0 chr3 153503949 153503994 -6095789 + (CAGA)n Simple_repeat Simple_repeat 4 48 0 8 1756 932 223 48 5 chr3 153504655 153504862 -6094921 + B3 SINE B2 1 216 0 9 1756 337 337 102 24 chr3 153505243 153505636 -6094147 + L1M5 LINE L1 4069 4491 -1655 1 1756 390 196 0 0 chr3 153506232 153506324 -6093459 + (TG)n Simple_repeat Simple_repeat 1 92 0 1 1756 474 301 58 0 chr3 153506324 153506480 -6093303 - RSINE1 SINE B4 0 165 1 1 1756 1841 132 54 93 chr3 153508449 153508835 -6090948 + ORR1B1 LTR MaLR 24 394 0 1 1756 263 238 75 0 chr3 153509801 153509881 -6089902 - L1MA4 LINE L1 -374 5926 5841 1 1756 217 250 15 15 chr3 153509993 153510058 -6089725 - L2 LINE L2 -958 2461 2397 1 1756 404 313 17 0 chr3 153511584 153511699 -6088084 + RSINE1 SINE B4 3 119 -46 1 1756 486 0 0 0 chr3 153512129 153512183 -6087600 + (GA)n Simple_repeat Simple_repeat 1 54 0 1 1756 384 233 48 0 chr3 153512460 153512563 -6087220 - B3 SINE B2 -108 108 1 1 1756 225 0 0 0 chr3 153512652 153512677 -6087106 + (TG)n Simple_repeat Simple_repeat 2 26 0 1 1756 510 265 102 44 chr3 153512705 153512910 -6086873 - B4A SINE B4 -71 221 5 2 1756 512 174 152 57 chr3 153513154 153513331 -6086452 + B3A SINE B2 5 198 0 2 1756 230 258 0 61 chr3 153515691 153515757 -6084026 - RSINE1 SINE B4 -38 127 66 2 1756 448 256 2 3 chr3 153516653 153516774 -6083009 + B3 SINE B2 71 188 -28 2 1756 922 212 95 90 chr3 153517261 153517618 -6082165 - ORR1E LTR MaLR 0 359 1 2 1756 871 186 0 0 chr3 153517864 153518009 -6081774 - B1_Mur3 SINE Alu 0 149 5 2 1756 629 158 76 38 chr3 153518380 153518512 -6081271 + B1_Mur2 SINE Alu 13 149 0 2 1756 231 88 0 0 chr3 153518514 153518548 -6081235 + (A)n Simple_repeat Simple_repeat 1 34 0 2 1756 228 167 0 0 chr3 153518723 153518765 -6081018 - B1_Mus2 SINE Alu -1 146 105 2 1756 625 251 40 20 chr3 153518840 153519039 -6080744 + B3 SINE B2 3 205 -11 2 1756 504 68 0 0 chr3 153519533 153519606 -6080177 + (TG)n Simple_repeat Simple_repeat 2 74 0 3 1756 514 267 8 0 chr3 153519607 153519727 -6080056 - RSINE1 SINE B4 -42 123 3 3 1756 23 68 0 0 chr3 153520606 153520650 -6079133 + AT_rich Low_complexity Low_complexity 1 44 0 3 1756 22 0 0 0 chr3 153521087 153521109 -6078674 + AT_rich Low_complexity Low_complexity 1 22 0 3 1756 1177 55 0 7 chr3 153523600 153523748 -6076035 + B1_Mm SINE Alu 1 147 0 3 1756 351 0 0 0 chr3 153524525 153524564 -6075219 + (CA)n Simple_repeat Simple_repeat 2 40 0 3 1756 449 226 32 0 chr3 153524573 153524666 -6075117 - B1_Mus1 SINE Alu -41 107 12 3 1756 1031 222 19 0 chr3 153524801 153525013 -6074770 + B3 SINE B2 1 216 0 3 1756 4543 33 22 6 chr3 153525015 153525562 -6074221 + L1Md_F2 LINE L1 6024 6579 -3 3 1756 542 273 36 7 chr3 153525562 153525702 -6074081 + B4 SINE B4 114 257 -35 3 1756 231 274 143 0 chr3 153525733 153525817 -6073966 - ID_B1 SINE B4 -94 130 35 4 1756 24 0 0 0 chr3 153525826 153525850 -6073933 + AT_rich Low_complexity Low_complexity 1 24 0 4 1756 579 96 0 0 chr3 153526027 153526110 -6073673 + (ATGTG)n Simple_repeat Simple_repeat 2 84 0 4 1756 875 166 7 0 chr3 153526708 153526847 -6072936 + B1_Mur3 SINE Alu 2 141 -8 4 1756 670 126 0 59 chr3 153527179 153527297 -6072486 + B1_Mur3 SINE Alu 29 139 -10 4 1756 214 255 196 47 chr3 153527362 153527469 -6072314 + B1F1 SINE Alu 27 149 0 4 1756 229 276 0 13 chr3 153527631 153527708 -6072075 + ID4 SINE ID 2 77 -6 4 1756 361 250 0 0 chr3 153528178 153528274 -6071509 + RMER1B Other Other 44 139 -927 4 1756 308 227 231 6 chr3 153528278 153528451 -6071332 - MLT2B4 LTR ERVL -343 213 2 4 1756 21 57 0 0 chr3 153528553 153528588 -6071195 + AT_rich Low_complexity Low_complexity 1 35 0 4 1756 1244 34 0 0 chr3 153528982 153529129 -6070654 - B1_Mus1 SINE Alu 0 148 2 5 1756 408 194 9 72 chr3 153529997 153530123 -6069660 + PB1D9 SINE Alu 3 119 -1 5 1756 321 254 42 17 chr3 153531598 153531718 -6068065 + ID_B1 SINE B4 81 203 -21 5 1756 222 118 0 0 chr3 153531940 153531974 -6067809 + (TG)n Simple_repeat Simple_repeat 2 35 0 5 1756 1021 201 50 17 chr3 153532177 153532415 -6067368 - ORR1D1 LTR MaLR -108 266 21 5 1756 418 264 149 17 chr3 153533420 153533601 -6066182 + ID_B1 SINE B4 2 206 -18 5 1756 1237 41 0 0 chr3 153533733 153533880 -6065903 + B1_Mm SINE Alu 1 147 0 5 1756 704 279 34 0 chr3 153533971 153534179 -6065604 + B3 SINE B2 1 215 -1 5 1756 1153 76 0 0 chr3 153534667 153534812 -6064971 - B1_Mm SINE Alu 0 147 3 5 1756 327 272 149 34 chr3 153534882 153535057 -6064726 - B3A SINE B2 -2 196 2 5 1756 267 240 13 0 chr3 153535694 153535777 -6064006 + (CA)n Simple_repeat Simple_repeat 1 84 0 6 1756 1214 55 0 0 chr3 153535777 153535922 -6063861 + B1_Mus2 SINE Alu 3 147 0 6 1756 214 329 14 0 chr3 153535922 153535991 -6063792 + A-rich Low_complexity Low_complexity 83 152 0 6 1756 587 203 24 8 chr3 153537232 153537356 -6062427 + RSINE1 SINE B4 2 127 -38 6 1756 342 53 20 8 chr3 153538405 153538462 -6061321 - MTD LTR MaLR 0 419 371 6 1756 1163 199 179 12 chr3 153538507 153538837 -6060946 - MTD LTR MaLR -34 385 1 6 1756 573 228 24 16 chr3 153539077 153539202 -6060581 - B1_Mur1 SINE Alu -21 128 3 6 1756 893 181 90 6 chr3 153539211 153539389 -6060394 - RMER1C Other Other -2 1340 1148 6 1756 288 0 0 0 chr3 153539465 153539497 -6060286 + (TC)n Simple_repeat Simple_repeat 1 32 0 6 1756 387 0 0 0 chr3 153539497 153539539 -6060244 + (CA)n Simple_repeat Simple_repeat 1 43 0 6 1756 617 157 141 0 chr3 153540667 153540788 -6058995 - B1_Mur2 SINE Alu -7 142 5 6 1756 482 265 93 29 chr3 153541643 153541783 -6058000 - RSINE1 SINE B4 0 165 17 7 1756 334 214 59 30 chr3 153542050 153542151 -6057632 + L1MC4 LINE L1 7744 7847 -195 7 1756 3489 20 5 2 chr3 153542812 153543207 -6056576 - MTA_Mm LTR MaLR 0 396 1 7 1756 299 333 91 14 chr3 153543638 153543848 -6055935 + L1M5 LINE L1 4818 5043 -1103 7 1756 2353 75 28 21 chr3 153544205 153544530 -6055253 - ORR1A2 LTR MaLR 0 327 1 7 1756 1369 85 21 5 chr3 153544563 153544752 -6055031 + B2_Mm2 SINE B2 1 192 -3 7 1756 688 101 65 0 chr3 153544763 153544932 -6054851 + GA-rich Low_complexity Low_complexity 1 180 0 7 1756 230 260 250 0 chr3 153545531 153545627 -6054156 + L1M5 LINE L1 3309 3428 -2718 7 1756 511 211 153 23 chr3 153546260 153546391 -6053392 + B1_Mur2 SINE Alu 1 148 -1 7 1756 1300 14 23 0 chr3 153547249 153547466 -6052317 + (CACAG)n Simple_repeat Simple_repeat 1 222 0 7 1756 372 256 0 0 chr3 153547711 153547797 -6051986 + B4A SINE B4 207 292 0 8 1756 260 175 0 16 chr3 153547811 153547875 -6051908 + (CA)n Simple_repeat Simple_repeat 2 64 0 8 1756 255 279 144 41 chr3 153548063 153548160 -6051623 + PB1D10 SINE Alu 1 107 -10 8 1756 414 193 83 0 chr3 153548173 153548282 -6051501 + B3 SINE B2 97 214 -2 8 1756 350 340 20 39 chr3 153548292 153548445 -6051338 + polypurine Low_complexity Low_complexity 4 153 0 8 1756 377 318 0 18 chr3 153548324 153548436 -6051347 + GA-rich Low_complexity Low_complexity 5 114 0 8 1756 1589 47 0 0 chr3 153549139 153549332 -6050451 + B2_Mm1a SINE B2 1 193 0 8 1756 189 0 0 0 chr3 153549332 153549353 -6050430 + (A)n Simple_repeat Simple_repeat 1 21 0 8 1756 896 154 177 21 chr3 153549367 153549553 -6050230 + B3 SINE B2 2 216 0 8 1756 376 219 24 12 chr3 153549665 153549748 -6050035 + PB1D10 SINE Alu 6 89 -28 8 1756 406 271 37 22 chr3 153550150 153550286 -6049497 - ID_B1 SINE B4 -6 218 81 9 1756 195 314 0 0 chr3 153550378 153550429 -6049354 - L2b LINE L2 -79 3296 3246 9 1756 742 264 0 47 chr3 153550527 153550698 -6049085 + RSINE1 SINE B4 3 165 0 9 1756 731 301 54 4 chr3 153550900 153551177 -6048606 - RMER5 LTR ERV1 0 534 244 9 1756 315 251 30 23 chr3 153551982 153552082 -6047701 - PB1D7 SINE Alu -57 90 1 9 1756 358 198 257 0 chr3 153552158 153552259 -6047524 + B1_Mur1 SINE Alu 1 127 -22 9 1756 495 201 12 24 chr3 153552264 153552432 -6047351 + GA-rich Low_complexity Low_complexity 3 168 0 9 1756 1680 31 0 0 chr3 153552574 153552767 -6047016 + B2_Mm1a SINE B2 1 193 0 9 1756 21 36 0 0 chr3 153553202 153553230 -6046553 + AT_rich Low_complexity Low_complexity 1 28 0 9 1756 346 288 12 35 chr3 153553261 153553397 -6046386 + B1F SINE Alu 3 140 -9 9 1756 458 270 0 0 chr3 153553499 153553599 -6046184 + B1_Mur2 SINE Alu 1 100 -49 1 1756 289 211 78 13 chr3 153554127 153554204 -6045579 + PB1D10 SINE Alu 25 106 -11 1 1756 1098 95 0 13 chr3 153554436 153554574 -6045209 + B1_Mus1 SINE Alu 2 139 -9 1 1756 180 0 0 0 chr3 153554574 153554594 -6045189 + (CAA)n Simple_repeat Simple_repeat 2 21 0 1 1756 1485 145 37 44 chr3 153554840 153555136 -6044647 - RMER6B LTR ERVK 0 461 168 1 1756 288 93 0 0 chr3 153555125 153555168 -6044615 + ORR1A2 LTR MaLR 276 318 -8 1 1756 10840 117 73 28 chr3 153555173 153557050 -6042733 + ORR1A2-int LTR MaLR 2 1963 0 1 1756 2085 113 3 112 chr3 153557050 153557156 -6042627 + ORR1A2 LTR MaLR 1 106 -221 1 1756 1176 75 7 0 chr3 153557156 153557303 -6042480 + B1_Mus1 SINE Alu 1 148 0 1 1756 2085 113 3 112 chr3 153557303 153557563 -6042220 + ORR1A2 LTR MaLR 107 327 0 1 1756 711 73 18 0 chr3 153557663 153557773 -6042010 + BC1_Mm scRNA scRNA 1 112 -40 1 1756 1108 80 0 0 chr3 153557779 153557916 -6041867 + B1_Mus1 SINE Alu 1 137 -11 1 1756 518 230 63 0 chr3 153558221 153558347 -6041436 + B1_Mur1 SINE Alu 5 138 -11 1 1756 337 86 0 33 chr3 153558348 153558408 -6041375 + (CAA)n Simple_repeat Simple_repeat 2 59 0 1 1756 749 269 42 134 chr3 153558942 153559376 -6040407 + MTD LTR MaLR 25 418 -1 1 1756 1217 48 0 7 chr3 153559488 153559636 -6040147 - B1_Mm SINE Alu 0 147 1 1 1756 456 274 55 24 chr3 153560864 153560991 -6038792 - B1F2 SINE Alu -9 140 10 1 1756 354 308 42 66 chr3 153560991 153561031 -6038752 - ID_B1 SINE B4 -9 215 53 1 1756 860 191 7 0 chr3 153561184 153561331 -6038452 - B1_Mus1 SINE Alu 0 148 1 1 1756 865 85 120 23 chr3 153561402 153561535 -6038248 + B1_Mus2 SINE Alu 1 146 -1 1 1756 192 279 94 31 chr3 153561733 153561829 -6037954 - MIR SINE MIR -7 255 154 1 1756 254 224 44 15 chr3 153561856 153561924 -6037859 + ID4_ SINE ID 3 72 -11 1 1756 226 60 160 0 chr3 153561926 153561976 -6037807 + (TGAA)n Simple_repeat Simple_repeat 4 61 0 1 1756 291 188 85 40 chr3 153562190 153562274 -6037509 + MLT1C LTR MaLR 16 83 -307 1 1756 1496 58 26 0 chr3 153562274 153562463 -6037320 + B2_Mm2 SINE B2 2 195 0 1 1756 271 252 137 145 chr3 153562463 153562633 -6037150 + MLT1C LTR MaLR 84 268 -122 1 1756 378 245 42 18 chr3 153562754 153562920 -6036863 + (CATATA)n Simple_repeat Simple_repeat 5 174 0 1 1756 207 0 0 0 chr3 153562939 153562962 -6036821 + (CA)n Simple_repeat Simple_repeat 2 24 0 1 1756 1161 62 7 0 chr3 153563134 153563279 -6036504 - B1_Mus2 SINE Alu 0 147 2 1 1756 684 244 7 0 chr3 153563426 153563561 -6036222 + B1_Mus2 SINE Alu 2 137 -10 1 1756 252 0 0 0 chr3 153563574 153563602 -6036181 + (CA)n Simple_repeat Simple_repeat 1 28 0 1 1756 342 207 156 8 chr3 153563819 153563941 -6035842 + RMER15 LTR ERVL 422 561 -14 1 1756 39 68 0 0 chr3 153564598 153564672 -6035111 + AT_rich Low_complexity Low_complexity 1 74 0 1 1756 699 201 28 7 chr3 153564888 153565033 -6034750 - B1F SINE Alu -1 148 1 1 1756 663 269 109 0 chr3 153565063 153565256 -6034527 + ID_B1 SINE B4 2 215 -9 1 1756 1945 169 83 162 chr3 153565789 153566105 -6033678 + RMER16 LTR ERVK 1 259 -274 1 1756 1177 61 0 0 chr3 153566105 153566252 -6033531 - B1_Mus2 SINE Alu 0 147 1 1 1756 1945 169 83 162 chr3 153566252 153566381 -6033402 + RMER16 LTR ERVK 260 401 -132 1 1756 1105 43 57 0 chr3 153566381 153566521 -6033262 + B1_Mus1 SINE Alu 1 148 0 1 1756 1945 169 83 162 chr3 153566521 153566653 -6033130 + RMER16 LTR ERVK 402 532 -1 1 1756 340 342 38 0 chr3 153566748 153566906 -6032877 - MER58B DNA MER1_type -31 310 147 1 1756 334 200 144 0 chr3 153566949 153567039 -6032744 + PB1D9 SINE Alu 18 120 0 1 1756 470 155 0 0 chr3 153567062 153567156 -6032627 + B1_Mur2 SINE Alu 51 144 -5 1 1756 638 253 115 6 chr3 153567650 153567833 -6031950 - B3 SINE B2 -13 203 1 1 1756 386 303 19 31 chr3 153568000 153568160 -6031623 + RSINE1 SINE B4 2 159 -6 1 1756 333 200 103 103 chr3 153568210 153568355 -6031428 + B1F SINE Alu 2 146 -3 1 1756 183 42 0 0 chr3 153568658 153568682 -6031101 + (CTG)n Simple_repeat Simple_repeat 1 24 0 1 1756 308 167 147 53 chr3 153569608 153569703 -6030080 + ORR1C2 LTR MaLR 273 376 -8 1 1756 211 247 51 64 chr3 153571502 153571580 -6028203 - B1_Mus1 SINE Alu -60 88 12 1 1756 464 205 55 47 chr3 153573967 153574095 -6025688 + URR1B DNA MER1_type 94 222 -3 1 1756 355 193 105 44 chr3 153575377 153575491 -6024292 - B1_Mur1 SINE Alu -16 133 13 1 1756 601 278 35 10 chr3 153576111 153576311 -6023472 + ID_B1 SINE B4 11 215 -9 1 1756 242 224 0 0 chr3 153576704 153576753 -6023030 + MER33 DNA MER1_type 50 98 -226 1 1756 1365 288 119 29 chr3 153576790 153577420 -6022363 + Lx8 LINE L1 6784 7470 -3 1 1756 348 181 114 30 chr3 153577438 153577569 -6022214 + MER33 DNA MER1_type 173 314 -10 1 1756 541 248 25 8 chr3 153577630 153577752 -6022031 + B1F SINE Alu 19 142 -7 1 1756 214 236 64 128 chr3 153577783 153577831 -6021952 - B2_Mm2 SINE B2 -9 186 136 1 1756 405 0 0 0 chr3 153577831 153577876 -6021907 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 1756 335 281 16 0 chr3 153577876 153577968 -6021815 - B3 SINE B2 -48 150 55 1 1756 1133 273 80 54 chr3 153578505 153578592 -6021191 + MT2A LTR ERVL 1 88 -445 1 1756 213 65 0 0 chr3 153578598 153578629 -6021154 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1 1756 1078 90 14 0 chr3 153578629 153578766 -6021017 - B1_Mus2 SINE Alu -6 141 3 1 1756 1133 273 80 54 chr3 153578766 153579193 -6020590 + MT2A LTR ERVL 89 528 -5 1 1756 874 292 39 25 chr3 153579257 153579538 -6020245 - B4A SINE B4 -6 286 2 1 1756 416 287 24 77 chr3 153579566 153579736 -6020047 - RSINE1 SINE B4 -2 163 3 1 1756 1729 116 25 118 chr3 153579861 153580224 -6019559 - ORR1A4 LTR MaLR 0 329 1 1 1756 427 287 111 63 chr3 153580355 153580608 -6019175 + RLTR9A LTR ERVK 104 368 0 1 1756 362 216 45 0 chr3 153580617 153580705 -6019078 + ID_B1 SINE B4 131 222 -2 1 1756 589 229 163 27 chr3 153580788 153580972 -6018811 - B3 SINE B2 -1 215 7 1 1756 687 51 24 6 chr3 153581027 153581136 -6018647 - B1_Mus2 SINE Alu 0 147 2 1 1756 544 55 358 0 chr3 153581259 153581368 -6018415 - B2_Mm2 SINE B2 -1 194 47 1 1756 1150 102 11 59 chr3 153581396 153581583 -6018200 - B2_Mm1t SINE B2 -14 179 2 1 1756 1460 143 90 35 chr3 153581918 153582230 -6017553 + ORR1A4 LTR MaLR 1 329 0 1 1756 1405 34 103 0 chr3 153582238 153582413 -6017370 + B2_Mm1t SINE B2 1 193 0 1 1756 1457 64 32 5 chr3 153582428 153582617 -6017166 + B2_Mm2 SINE B2 2 195 0 1 1756 1707 91 66 4 chr3 153582758 153583001 -6016782 - L1_Mus2 LINE L1 0 6566 6309 1 1756 273 272 113 28 chr3 153583017 153583123 -6016660 + PB1D10 SINE Alu 1 115 -2 1 1756 692 230 14 0 chr3 153583215 153583354 -6016429 + B1_Mur1 SINE Alu 2 142 -7 1 1756 202 51 50 25 chr3 153583366 153583406 -6016377 + (CAAAA)n Simple_repeat Simple_repeat 3 43 0 1 1756 259 304 49 0 chr3 153583646 153583748 -6016035 + MLT1A1 LTR MaLR 302 408 0 1 1756 1711 21 0 0 chr3 153583869 153584059 -6015724 + B2_Mm1a SINE B2 2 191 -2 1 1756 623 249 119 5 chr3 153584059 153584253 -6015530 - B3 SINE B2 0 216 1 1 1756 285 327 96 0 chr3 153584254 153584358 -6015425 - PB1D10 SINE Alu -3 114 1 1 1756 281 289 67 0 chr3 153584567 153584657 -6015126 - MTE2b LTR MaLR -9 370 275 1 1756 276 91 21 88 chr3 153584856 153585049 -6014734 + (CA)n Simple_repeat Simple_repeat 1 180 0 1 1756 196 128 21 76 chr3 153585060 153585204 -6014579 + (CA)n Simple_repeat Simple_repeat 1 136 0 1 1756 311 210 21 54 chr3 153586184 153586434 -6013349 + (TATAA)n Simple_repeat Simple_repeat 1 241 0 1 1756 794 192 0 14 chr3 153586451 153586599 -6013184 - B1_Mus1 SINE Alu -1 147 2 1 1756 2974 72 20 15 chr3 153586989 153587387 -6012396 + MTB LTR MaLR 1 400 0 1 1756 1100 178 64 5 chr3 153587479 153587682 -6012101 - B3 SINE B2 -1 215 1 1 1756 1128 141 10 59 chr3 153587967 153588171 -6011612 + B2_Mm2 SINE B2 2 195 0 1 1756 374 200 133 0 chr3 153588455 153588545 -6011238 - RSINE1 SINE B4 -61 104 3 1 1756 203 57 0 79 chr3 153589120 153589158 -6010625 + (T)n Simple_repeat Simple_repeat 1 35 0 1 1756 1142 75 7 0 chr3 153589160 153589306 -6010477 - B1_Mus1 SINE Alu -1 147 1 1 1756 247 270 111 11 chr3 153589307 153589397 -6010386 - PB1D10 SINE Alu -1 116 18 1 1756 946 185 60 0 chr3 153589413 153589613 -6010170 - B3 SINE B2 0 216 5 1 1756 270 0 0 0 chr3 153589637 153589667 -6010116 + (TA)n Simple_repeat Simple_repeat 1 30 0 1 1756 476 45 0 0 chr3 153589667 153589724 -6010059 - L1Md_F3 LINE L1 -21 6563 6507 1 1756 704 196 36 0 chr3 153589732 153589870 -6009913 - B1_Mur2 SINE Alu -6 143 1 1 1756 515 174 283 35 chr3 153590276 153590449 -6009334 - B3 SINE B2 0 216 1 1 1756 1397 66 33 0 chr3 153590877 153591059 -6008724 + B2_Mm2 SINE B2 1 188 -7 1 1756 1324 90 16 0 chr3 153591067 153591255 -6008528 + B2_Mm1a SINE B2 1 191 -2 1 1756 1398 99 5 0 chr3 153591268 153591460 -6008323 + B2_Mm1t SINE B2 1 193 0 1 1756 345 215 25 0 chr3 153591743 153591822 -6007961 + B1_Mur4 SINE Alu 11 91 -59 1 1756 653 218 102 64 chr3 153592114 153592379 -6007404 + B4 SINE B4 2 276 -16 1 1756 486 0 0 0 chr3 153592400 153592454 -6007329 + (CA)n Simple_repeat Simple_repeat 1 54 0 1 1756 198 143 0 0 chr3 153592454 153592489 -6007294 + (GGGA)n Simple_repeat Simple_repeat 3 37 0 1 1756 1596 37 21 0 chr3 153593552 153593741 -6006042 - B2_Mm1a SINE B2 0 193 1 1 1756 1487 65 11 0 chr3 153593964 153594150 -6005633 + B2_Mm1t SINE B2 1 188 -5 1 1756 492 142 18 55 chr3 153594150 153594314 -6005469 - RMER17C LTR ERVK -137 273 116 2 1756 405 273 0 26 chr3 153595018 153595131 -6004652 - PB1D10 SINE Alu -6 111 2 2 1756 194 222 45 45 chr3 153596183 153596249 -6003534 - MIRc SINE MIR -108 160 95 2 1756 566 257 0 35 chr3 153597235 153597380 -6002403 + B1F SINE Alu 9 148 -1 2 1756 1386 199 152 26 chr3 153597409 153597576 -6002207 + ORR1C2 LTR MaLR 1 170 -214 2 1756 213 121 0 0 chr3 153597576 153597609 -6002174 + (TCTG)n Simple_repeat Simple_repeat 1 33 0 2 1756 1386 199 152 26 chr3 153597609 153597782 -6002001 + ORR1C2 LTR MaLR 171 384 0 2 1756 191 333 23 45 chr3 153597869 153597957 -6001826 - L3 LINE CR1 -181 4308 4223 2 1756 304 216 33 22 chr3 153598010 153598100 -6001683 + (TCTG)n Simple_repeat Simple_repeat 3 93 0 2 1756 267 271 117 17 chr3 153598103 153598223 -6001560 + MurSatRep1 Unknown Unknown 163 294 -1843 2 1756 556 223 97 92 chr3 153598637 153598854 -6000929 - ID_B1 SINE B4 -6 218 1 2 1756 21 36 0 0 chr3 153599409 153599437 -6000346 + AT_rich Low_complexity Low_complexity 1 28 0 2 1756 247 266 38 0 chr3 153599470 153599549 -6000234 - ID4 SINE ID 0 83 2 2 1756 560 251 31 137 chr3 153599990 153600216 -5999567 + ID_B1 SINE B4 6 207 -17 2 1756 587 255 72 0 chr3 153601336 153601489 -5998294 - RSINE1 SINE B4 0 165 2 2 1756 757 221 0 7 chr3 153602800 153602950 -5996833 + B1_Mur1 SINE Alu 1 149 0 2 1756 198 0 0 0 chr3 153603156 153603178 -5996605 + (CAAA)n Simple_repeat Simple_repeat 3 24 0 2 1756 535 159 28 0 chr3 153603470 153603577 -5996206 - B1_Mur3 SINE Alu -31 118 9 2 1756 961 41 139 0 chr3 153603728 153603850 -5995933 + B1_Mm SINE Alu 1 139 -8 2 1756 273 57 0 0 chr3 153603975 153604010 -5995773 + (TG)n Simple_repeat Simple_repeat 2 36 0 2 1756 476 157 198 0 chr3 153604420 153604541 -5995242 + B1_Mur1 SINE Alu 4 148 -1 2 1756 306 326 14 70 chr3 153605013 153605155 -5994628 + RSINE1 SINE B4 30 163 -2 2 1756 487 282 0 0 chr3 153605353 153605456 -5994327 - B3A SINE B2 -66 132 30 2 1756 213 154 0 0 chr3 153605494 153605533 -5994250 + CT-rich Low_complexity Low_complexity 2 40 0 2 1756 270 0 0 0 chr3 153605533 153605563 -5994220 + (TG)n Simple_repeat Simple_repeat 2 31 0 2 1756 603 214 13 33 chr3 153605588 153605738 -5994045 - B1_Mur1 SINE Alu -1 148 2 2 1756 228 349 28 19 chr3 153605752 153605860 -5993923 - B1F SINE Alu 0 149 41 2 1756 277 274 0 0 chr3 153606020 153606093 -5993690 + (TG)n Simple_repeat Simple_repeat 2 74 0 2 1756 270 305 31 10 chr3 153608081 153608177 -5991606 + B1F1 SINE Alu 28 125 -24 2 1756 734 272 106 18 chr3 153608762 153609091 -5990692 + RMER5 LTR ERV1 81 438 -96 2 1756 1184 56 0 0 chr3 153609349 153609491 -5990292 - B1_Mus1 SINE Alu -5 143 2 2 1756 1364 75 17 0 chr3 153609491 153609665 -5990118 - B2_Mm2 SINE B2 -15 180 4 2 1756 557 239 127 0 chr3 153610010 153610144 -5989639 - B3A SINE B2 -47 151 1 2 1756 411 217 219 20 chr3 153610264 153610338 -5989445 - RLTR20A2 LTR ERVK 0 578 478 2 1756 396 0 0 0 chr3 153610338 153610382 -5989401 + (CA)n Simple_repeat Simple_repeat 2 45 0 2 1756 854 218 234 20 chr3 153610382 153610725 -5989058 - RLTR20A2 LTR ERVK -101 477 3 2 1756 237 260 27 27 chr3 153610940 153611015 -5988768 + PB1D7 SINE Alu 6 80 -40 2 1756 267 248 57 47 chr3 153611040 153611146 -5988637 + ID_B1 SINE B4 117 223 -1 2 1756 307 279 0 0 chr3 153611156 153611224 -5988559 + ID4_ SINE ID 3 70 -13 2 1756 297 146 0 0 chr3 153611446 153611494 -5988289 - B2_Mm2 SINE B2 -147 48 1 2 1756 726 157 66 0 chr3 153611541 153611662 -5988121 - B3 SINE B2 -87 129 1 2 1756 492 219 79 31 chr3 153611991 153612118 -5987665 + ID_B1 SINE B4 80 212 -12 2 1756 1523 144 21 77 chr3 153612589 153612875 -5986908 + Lx4A LINE L1 6777 7046 -12 2 1756 309 51 0 0 chr3 153612878 153612917 -5986866 + (TAA)n Simple_repeat Simple_repeat 1 39 0 2 1756 429 107 0 0 chr3 153612931 153612987 -5986796 + ORR1A4 LTR MaLR 274 329 0 2 1756 270 314 128 0 chr3 153613122 153613224 -5986559 + PB1D10 SINE Alu 1 115 -2 2 1756 431 299 47 55 chr3 153613327 153613357 -5986426 + B4 SINE B4 58 153 -139 2 1756 567 235 88 7 chr3 153613357 153613494 -5986289 + B1_Mur1 SINE Alu 2 149 0 2 1756 431 299 47 55 chr3 153613494 153613523 -5986260 + B4 SINE B4 154 254 -38 2 1756 841 243 98 17 chr3 153613619 153613981 -5985802 + ORR1A4 LTR MaLR 32 364 -1 2 1756 944 159 6 29 chr3 153613981 153614154 -5985629 + ORR1A4-int LTR MaLR 1 169 -1794 2 1756 1839 224 48 52 chr3 153614154 153614630 -5985153 - RMER19C LTR ERVK 0 611 138 2 1756 2331 115 82 5 chr3 153614669 153615045 -5984738 + ORR1A4-int LTR MaLR 164 568 -1395 2 1756 457 122 19 143 chr3 153615043 153615100 -5984683 + ORR1A4 LTR MaLR 276 326 -41 2 1756 4238 51 0 17 chr3 153615100 153615126 -5984657 + L1_Mus1 LINE L1 6044 6068 -499 2 1756 2263 15 114 0 chr3 153615126 153615388 -5984395 - RLTR10B LTR ERVK 0 292 1 2 1756 4238 51 0 17 chr3 153615388 153615884 -5983899 + L1_Mus1 LINE L1 6069 6557 -10 2 1756 249 108 0 0 chr3 153615884 153615921 -5983862 + (TAA)n Simple_repeat Simple_repeat 1 37 0 2 1756 457 122 19 143 chr3 153615921 153615967 -5983816 + ORR1A4 LTR MaLR 327 366 -1 2 1756 261 286 0 0 chr3 153615967 153616020 -5983763 + ID_B1 SINE B4 172 224 0 2 1756 296 127 18 0 chr3 153616020 153616075 -5983708 + (GGAA)n Simple_repeat Simple_repeat 1 56 0 2 1756 305 260 14 14 chr3 153616081 153616155 -5983628 + ID4_ SINE ID 8 81 -2 2 1756 224 295 34 11 chr3 153616155 153616170 -5983613 + ID_B1 SINE B4 8 98 -126 2 219 1405 83 46 30 chr3 153616242 153616479 -5983304 - Lx LINE L1 -1 6653 6413 2 1757 357 145 0 0 chr3 153616586 153616648 -5983135 + (CA)n Simple_repeat Simple_repeat 2 63 0 2 1757 528 271 85 95 chr3 153616754 153616911 -5982872 - B3A SINE B2 0 198 40 2 1757 1610 37 16 0 chr3 153616911 153617099 -5982684 - B2_Mm1a SINE B2 -1 192 2 2 1757 528 271 85 95 chr3 153617099 153617141 -5982642 - B3A SINE B2 -159 39 1 2 1757 749 325 25 71 chr3 153617579 153617947 -5981836 + ORR1E LTR MaLR 1 351 -8 2 1757 368 239 0 0 chr3 153618018 153618089 -5981694 + ID4 SINE ID 2 72 -11 2 1757 1107 288 14 51 chr3 153618207 153618500 -5981283 - B4A SINE B4 -9 283 2 2 1757 336 203 0 33 chr3 153618504 153618565 -5981218 + PB1D10 SINE Alu 57 115 -2 2 1757 549 0 0 0 chr3 153618870 153618931 -5980852 + (TC)n Simple_repeat Simple_repeat 1 61 0 2 1757 333 0 0 0 chr3 153618931 153618967 -5980816 + (CA)n Simple_repeat Simple_repeat 1 37 0 2 1757 550 271 75 0 chr3 153619093 153619226 -5980557 - 7SLRNA srpRNA srpRNA -170 144 2 2 1757 390 157 0 41 chr3 153619162 153619235 -5980548 - B4A SINE B4 -142 150 81 2 1757 305 238 64 82 chr3 153619364 153619474 -5980309 - B3 SINE B2 -106 110 3 2 1757 245 299 0 0 chr3 153619992 153620059 -5979724 - ID4_ SINE ID -14 69 3 2 1757 497 171 163 47 chr3 153620074 153620203 -5979580 - B1_Mur1 SINE Alu 0 149 6 2 1757 325 309 91 0 chr3 153620314 153620424 -5979359 - PB1D7 SINE Alu 0 120 1 2 1757 348 327 19 9 chr3 153620465 153620570 -5979213 - MLT2B1 LTR ERVL -60 507 402 2 1757 299 276 46 37 chr3 153620604 153620713 -5979070 - MLT2B1 LTR ERVL -362 194 85 2 1757 337 273 17 83 chr3 153620716 153620836 -5978947 + PB1D7 SINE Alu 1 112 -8 2 1757 336 293 36 130 chr3 153621203 153621450 -5978333 + RLTR41 LTR ERV1 161 384 -62 2 1757 250 203 94 0 chr3 153621531 153621595 -5978188 - Charlie5 DNA MER1_type -2337 287 218 2 1757 197 237 50 17 chr3 153621725 153621785 -5977998 + MER5A DNA MER1_type 127 188 -1 2 1757 692 196 3 33 chr3 153621968 153622271 -5977512 + (CA)n Simple_repeat Simple_repeat 1 294 0 2 1757 337 89 0 67 chr3 153622272 153622332 -5977451 + HAL1-3A_ME LINE L1 1974 2029 -829 2 1757 406 236 16 16 chr3 153622391 153622520 -5977263 + Lx9 LINE L1 7516 7644 0 2 1757 420 284 5 2 chr3 153623195 153623623 -5976160 + (TG)n Simple_repeat Simple_repeat 1 428 0 2 1757 283 271 17 0 chr3 153623740 153623799 -5975984 - B4 SINE B4 -220 72 13 2 1757 468 0 0 0 chr3 153624137 153624189 -5975594 + (TTTA)n Simple_repeat Simple_repeat 4 55 0 2 1757 995 112 129 121 chr3 153624565 153624606 -5975177 - URR1A DNA MER1_type 0 226 203 2 1757 2041 107 113 0 chr3 153624606 153624934 -5974849 - Lx LINE L1 0 6654 6290 2 1757 995 112 129 121 chr3 153624934 153625116 -5974667 - URR1A DNA MER1_type -24 202 1 2 1757 620 204 0 0 chr3 153625391 153625504 -5974279 - B1_Mus1 SINE Alu -34 114 2 2 1757 1311 215 217 0 chr3 153625576 153625987 -5973796 + Lx9 LINE L1 7142 7641 -3 2 1757 465 180 78 97 chr3 153626009 153626163 -5973620 - B3A SINE B2 -8 190 40 2 1757 295 318 36 27 chr3 153626254 153626364 -5973419 - PB1D7 SINE Alu -1 119 9 2 1757 610 165 124 0 chr3 153626417 153626538 -5973245 - B1_Mur1 SINE Alu -2 147 12 2 1757 348 263 121 32 chr3 153626421 153626578 -5973205 - ID_B1 SINE B4 -6 218 48 2 1757 270 204 126 21 chr3 153626695 153626790 -5972993 - B1F SINE Alu 0 149 45 2 1757 491 167 116 96 chr3 153627060 153627206 -5972577 - B1_Mur1 SINE Alu 0 149 1 2 1757 614 215 23 58 chr3 153627244 153627411 -5972372 - RLTR20A2 LTR ERVK -16 562 384 2 1757 367 224 47 159 chr3 153627424 153627655 -5972128 - RLTR20A2 LTR ERVK -261 273 43 2 1757 2227 63 0 103 chr3 153627663 153628014 -5971769 - RLTR10B2 LTR ERVK -50 315 1 2 1757 258 299 0 105 chr3 153628406 153628492 -5971291 - ID_B1 SINE B4 -13 211 135 2 1757 1395 157 98 38 chr3 153628572 153628837 -5970946 + ORR1B2 LTR MaLR 79 359 -8 2 1757 286 274 0 0 chr3 153629530 153629592 -5970191 + ID_B1 SINE B4 45 106 -118 2 1757 988 268 29 105 chr3 153629760 153630140 -5969643 - MTE2a LTR MaLR -17 362 12 2 1757 732 186 125 26 chr3 153630152 153630384 -5969399 - B4A SINE B4 -13 279 25 2 1757 419 264 0 9 chr3 153630379 153630484 -5969299 - B1F SINE Alu -22 126 26 2 1757 392 261 57 40 chr3 153632079 153632203 -5967580 - RMER30 DNA MER1_type -6 196 71 3 1757 1620 162 129 18 chr3 153632562 153632902 -5966881 + ORR1C1 LTR MaLR 1 378 0 3 1757 263 248 165 19 chr3 153633553 153633656 -5966127 - PB1D7 SINE Alu 0 120 3 3 1757 1042 216 50 29 chr3 153634126 153634364 -5965419 - MT2A LTR ERVL -290 243 1 3 1757 355 127 87 4 chr3 153634372 153634468 -5965315 - B1F1 SINE Alu -1 148 40 3 1757 555 231 4 7 chr3 153634495 153634777 -5965006 + CT-rich Low_complexity Low_complexity 1 280 0 3 1757 357 247 0 0 chr3 153634800 153634950 -5964833 + (CCTG)n Simple_repeat Simple_repeat 2 151 0 3 1757 211 260 73 83 chr3 153635025 153635134 -5964649 - MIRc SINE MIR -122 146 39 3 1757 261 0 0 0 chr3 153635139 153635168 -5964615 + (T)n Simple_repeat Simple_repeat 1 29 0 3 1757 1910 80 189 0 chr3 153635231 153635506 -5964277 - ORR1A2 LTR MaLR 0 327 1 3 1757 285 266 0 0 chr3 153635601 153635665 -5964118 - B1F2 SINE Alu -65 84 21 3 1757 21 71 0 0 chr3 153637165 153637207 -5962576 + GC_rich Low_complexity Low_complexity 1 42 0 3 1757 409 182 0 53 chr3 153638539 153638690 -5961093 + CT-rich Low_complexity Low_complexity 3 145 0 3 1757 231 222 0 53 chr3 153639134 153639191 -5960592 + (TCCA)n Simple_repeat Simple_repeat 1 54 0 3 1757 352 247 73 85 chr3 153639191 153639207 -5960576 - B4 SINE B4 -60 232 191 3 1757 712 165 52 0 chr3 153639207 153639322 -5960461 - B1F SINE Alu -7 142 22 3 1757 352 247 73 85 chr3 153639322 153639368 -5960415 - B4 SINE B4 -60 190 58 3 1757 898 252 117 14 chr3 153639904 153640186 -5959597 + ORR1E LTR MaLR 44 354 -5 3 1757 5025 31 10 2 chr3 153640452 153641041 -5958742 - L1Md_F3 LINE L1 -2 6582 5989 3 1757 308 211 18 0 chr3 153642014 153642071 -5957712 + B1_Mur2 SINE Alu 91 148 -1 3 1757 650 164 11 11 chr3 153642080 153642271 -5957512 + GA-rich Low_complexity Low_complexity 1 191 0 3 1757 296 242 64 0 chr3 153642286 153642369 -5957414 + B1F SINE Alu 19 105 -15 3 1757 295 329 0 0 chr3 153642469 153642554 -5957229 + B1F SINE Alu 52 136 -13 3 1757 180 0 0 0 chr3 153642554 153642574 -5957209 + (CAAAC)n Simple_repeat Simple_repeat 1 20 0 3 1757 330 132 0 0 chr3 153642574 153642627 -5957156 + (CAG)n Simple_repeat Simple_repeat 1 53 0 3 1757 295 250 0 27 chr3 153642741 153642815 -5956968 - ID4 SINE ID -9 74 3 3 1757 511 246 42 0 chr3 153642827 153642945 -5956838 - B1F SINE Alu 0 149 27 3 1757 410 163 12 0 chr3 153642985 153643057 -5956726 + CT-rich Low_complexity Low_complexity 17 89 0 3 1757 1263 94 0 0 chr3 153643057 153643237 -5956546 + (TCCC)n Simple_repeat Simple_repeat 1 180 0 3 1757 410 163 12 0 chr3 153643237 153643250 -5956533 + polypyrimidine Low_complexity Low_complexity 4 16 0 3 1757 707 207 35 14 chr3 153643266 153643408 -5956375 - B1_Mus2 SINE Alu -2 145 1 3 1757 451 303 71 19 chr3 153643563 153643718 -5956065 - RSINE1 SINE B4 -1 164 2 3 1757 3480 42 0 0 chr3 153644024 153644434 -5955349 - L1Md_F2 LINE L1 -232 5651 5242 3 1757 7659 40 3 2 chr3 153644434 153645354 -5954429 + L1Md_F2 LINE L1 5662 6582 0 3 1757 393 39 0 0 chr3 153645652 153645703 -5954080 + (TG)n Simple_repeat Simple_repeat 1 51 0 3 1757 353 398 23 51 chr3 153646617 153646834 -5952949 + MLT1F2 LTR MaLR 348 558 -2 3 1757 471 254 134 58 chr3 153647525 153647801 -5951982 + RMER20B LTR ERVK 121 417 -210 3 1757 2241 64 48 58 chr3 153648069 153648399 -5951384 + ORR1A2 LTR MaLR 1 327 0 3 1757 336 338 61 15 chr3 153648419 153648551 -5951232 + ID_B1 SINE B4 87 224 0 3 1757 382 282 86 0 chr3 153648435 153648552 -5951231 + B1F SINE Alu 23 149 0 3 1757 868 279 72 93 chr3 153648923 153649299 -5950484 + MTE2a LTR MaLR 2 369 -10 3 1757 1000 189 139 37 chr3 153651841 153652118 -5947665 - ORR1D1 LTR MaLR -4 370 63 3 1757 477 191 9 28 chr3 153652313 153652421 -5947362 - ORR1D1 LTR MaLR -268 106 1 3 1757 391 252 315 36 chr3 153653138 153653303 -5946480 - B3A SINE B2 0 216 6 3 1757 15394 88 5 5 chr3 153653712 153656573 -5943210 - L1_Mus3 LINE L1 -15 6623 3761 3 1757 2493 109 68 11 chr3 153656573 153656954 -5942829 - RLTR9D LTR ERVK 0 403 1 3 1757 15394 96 2 6 chr3 153656954 153656973 -5942810 - L1_Mus3 LINE L1 -2123 3760 3745 3 1757 6961 116 4 47 chr3 153656963 153657505 -5942278 + L1_Mm LINE L1 2625 3152 -2731 3 1757 1294 27 0 0 chr3 153657505 153657652 -5942131 + B1_Mus2 SINE Alu 1 147 0 3 1757 6961 116 4 47 chr3 153657652 153657676 -5942107 + L1_Mm LINE L1 3153 3153 -2730 3 1757 1094 79 14 0 chr3 153657676 153657815 -5941968 + B1_Mus1 SINE Alu 1 141 -7 3 1757 381 22 0 0 chr3 153657818 153657864 -5941919 + (TAAA)n Simple_repeat Simple_repeat 2 47 0 3 1757 6961 116 4 47 chr3 153657864 153658458 -5941325 + L1_Mm LINE L1 3153 3740 -2143 3 1757 186 43 0 0 chr3 153658862 153658885 -5940898 + (T)n Simple_repeat Simple_repeat 1 23 0 3 1757 652 280 100 65 chr3 153659256 153659535 -5940248 + B4A SINE B4 1 289 -3 3 1757 387 179 23 47 chr3 153659541 153659761 -5940022 + (CA)n Simple_repeat Simple_repeat 1 214 0 3 1757 518 270 39 26 chr3 153660037 153660193 -5939590 - MLT2B1 LTR ERVL 0 567 410 3 1757 435 213 0 130 chr3 153660221 153660367 -5939416 + PB1 SINE Alu 1 127 0 3 1757 231 313 0 0 chr3 153660518 153660585 -5939198 + MER5A DNA MER1_type 3 69 -120 3 1757 1008 238 39 28 chr3 153660591 153660876 -5938907 + B4A SINE B4 1 288 -4 3 1757 360 0 0 0 chr3 153660902 153660942 -5938841 + (CA)n Simple_repeat Simple_repeat 2 41 0 3 1757 452 295 29 0 chr3 153660986 153661125 -5938658 - ID_B1 SINE B4 0 224 82 3 1757 870 229 53 5 chr3 153661150 153661339 -5938444 - B3 SINE B2 -18 198 1 3 1757 417 141 0 0 chr3 153661380 153661451 -5938332 + (CACAC)n Simple_repeat Simple_repeat 2 72 0 3 1757 1255 189 189 16 chr3 153661646 153661964 -5937819 + MTD LTR MaLR 43 415 -4 3 1757 499 278 117 7 chr3 153662791 153662936 -5936847 + B4A SINE B4 48 208 -84 3 1757 1547 218 45 20 chr3 153662946 153663302 -5936481 + RMER1C Other Other 612 976 -366 3 1757 1449 174 111 16 chr3 153663372 153663687 -5936096 - RMER1C Other Other -4 1338 994 3 1757 1854 224 16 179 chr3 153664248 153664978 -5934805 - RMER19C LTR ERVK 0 611 1 3 1757 439 291 36 0 chr3 153665109 153665219 -5934564 + ID_B1 SINE B4 80 193 -31 3 1757 785 288 6 0 chr3 153665214 153665384 -5934399 + B3A SINE B2 5 175 -23 3 1757 270 106 0 0 chr3 153665395 153665442 -5934341 + (CAGA)n Simple_repeat Simple_repeat 4 50 0 3 1757 23 54 0 0 chr3 153665478 153665515 -5934268 + AT_rich Low_complexity Low_complexity 1 37 0 3 1757 1332 238 86 55 chr3 153665813 153666296 -5933487 - MT2B LTR ERVL 0 601 1 3 1757 183 42 0 0 chr3 153666444 153666468 -5933315 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 3 1757 8613 33 0 1 chr3 153666470 153667750 -5932033 - L1Md_F2 LINE L1 -11 6571 5293 3 1757 240 35 0 0 chr3 153668466 153668495 -5931288 + (CTG)n Simple_repeat Simple_repeat 1 29 0 3 1757 413 275 111 7 chr3 153668686 153668872 -5930911 - ID_B1 SINE B4 -12 280 80 3 1757 302 338 26 109 chr3 153668860 153669016 -5930767 - B4A SINE B4 -67 225 83 3 1757 240 243 34 68 chr3 153669028 153669272 -5930511 - Lx8 LINE L1 0 7473 7265 3 1757 1061 248 42 4 chr3 153669363 153669626 -5930157 - Lx8 LINE L1 -910 6563 6291 3 1757 442 221 21 0 chr3 153669627 153669722 -5930061 - B4A SINE B4 -189 103 7 3 1757 691 293 118 18 chr3 153669946 153670380 -5929403 - L1MA7 LINE L1 -5 6286 5810 3 1757 778 241 96 46 chr3 153670390 153670651 -5929132 + B4 SINE B4 3 276 -16 3 1757 290 156 16 0 chr3 153670800 153670864 -5928919 + (CAT)n Simple_repeat Simple_repeat 2 66 0 3 1757 430 287 58 22 chr3 153670869 153671008 -5928775 - B1F1 SINE Alu -5 144 1 3 1757 318 262 111 12 chr3 153671246 153671408 -5928375 - L1MA7 LINE L1 -846 5466 5289 3 1757 667 141 64 98 chr3 153672121 153672294 -5927489 - B2_Mm2 SINE B2 -28 167 1 3 1757 333 258 72 0 chr3 153672774 153672871 -5926912 - ID_B1 SINE B4 -8 216 113 3 1757 291 239 246 9 chr3 153672871 153672888 -5926895 - B1F SINE Alu -8 141 1 3 1757 1029 277 78 18 chr3 153673704 153674039 -5925744 - Lx8 LINE L1 -390 7083 6729 3 1757 820 142 8 0 chr3 153674108 153674242 -5925541 + B1_Mus1 SINE Alu 6 140 -8 3 1757 246 181 67 96 chr3 153674243 153674347 -5925436 + Lx8 LINE L1 7348 7448 -25 3 1757 717 236 0 13 chr3 153674588 153674738 -5925045 + B1F2 SINE Alu 2 149 0 3 1757 931 119 20 0 chr3 153674983 153675134 -5924649 - B2_Mm2 SINE B2 -14 181 28 3 1757 303 28 0 0 chr3 153675188 153675224 -5924559 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 3 1757 505 16 0 0 chr3 153675224 153675287 -5924496 - B1_Mur4 SINE Alu -9 141 79 3 1757 213 169 0 0 chr3 153675577 153675636 -5924147 + (TCTG)n Simple_repeat Simple_repeat 1 59 0 3 1757 411 312 76 12 chr3 153676153 153676325 -5923458 + LTR16C LTR ERVL 307 489 0 3 1757 522 232 0 0 chr3 153677398 153677790 -5921993 + (CA)n Simple_repeat Simple_repeat 1 392 0 3 1757 21 0 0 0 chr3 153678472 153678493 -5921290 + AT_rich Low_complexity Low_complexity 1 21 0 3 1757 1695 139 82 15 chr3 153678867 153679025 -5920758 - ORR1C2 LTR MaLR -33 351 189 3 1757 1299 51 0 0 chr3 153679025 153679201 -5920582 + (GA)n Simple_repeat Simple_repeat 1 176 0 3 1757 1695 139 82 15 chr3 153679201 153679371 -5920412 - ORR1C2 LTR MaLR -196 188 1 3 1757 950 235 23 9 chr3 153679863 153680082 -5919701 + ID_B1 SINE B4 2 223 -1 3 1757 3216 21 0 35 chr3 153681157 153681464 -5918319 - L1Md_F2 LINE L1 0 6582 6289 3 1757 3473 25 5 0 chr3 153681464 153681858 -5917925 - MTA_Mm LTR MaLR 0 396 1 3 1757 3216 21 0 35 chr3 153681858 153681945 -5917838 - L1Md_F2 LINE L1 -294 6288 6202 3 1757 369 0 0 0 chr3 153681989 153682030 -5917753 + (TTTA)n Simple_repeat Simple_repeat 2 42 0 3 1757 626 298 52 67 chr3 153682063 153682333 -5917450 - B4A SINE B4 -25 267 2 3 1757 230 301 72 60 chr3 153683345 153683511 -5916272 - L2a LINE L2 -55 3371 3204 3 1757 294 29 0 0 chr3 153684315 153684350 -5915433 + (CAG)n Simple_repeat Simple_repeat 1 35 0 4 1757 495 243 36 0 chr3 153684377 153684488 -5915295 + B3 SINE B2 21 135 -81 4 1757 195 42 0 0 chr3 153684488 153684512 -5915271 + (CACG)n Simple_repeat Simple_repeat 4 27 0 4 1757 2181 207 27 10 chr3 153684542 153685029 -5914754 - RMER5 LTR ERV1 -39 495 1 4 1757 549 0 0 0 chr3 153685147 153685208 -5914575 + (CA)n Simple_repeat Simple_repeat 1 61 0 4 1757 690 298 117 56 chr3 153685211 153685684 -5914099 - L1MA6 LINE L1 -347 5953 5374 4 1757 188 0 0 69 chr3 153685684 153685713 -5914070 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 4 1757 1142 65 0 0 chr3 153685713 153685852 -5913931 - B1_Mus2 SINE Alu -8 139 1 4 1757 690 305 133 65 chr3 153685852 153686400 -5913383 - L1MA6 LINE L1 -474 5373 4790 4 1757 41868 10 3 6 chr3 153686419 153693207 -5906576 - L1Md_A LINE L1 0 6582 1 4 1757 269 265 78 0 chr3 153693224 153693326 -5906457 - L1_Mur3 LINE L1 -1101 4779 4670 4 1757 186 71 0 0 chr3 153693358 153693386 -5906397 + (TG)n Simple_repeat Simple_repeat 1 28 0 4 1757 352 271 150 50 chr3 153693402 153693434 -5906349 - B3A SINE B2 -16 182 157 4 1757 6500 97 97 1 chr3 153693434 153694377 -5905406 - RLTR13D4 LTR ERVK 0 1033 1 4 1757 352 271 150 50 chr3 153694377 153694484 -5905299 - B3A SINE B2 -42 156 29 4 1757 2476 284 88 50 chr3 153694502 153694769 -5905014 - L1_Mur3 LINE L1 -1221 4659 4387 4 1757 3902 50 58 0 chr3 153694769 153695063 -5904720 + RLTR1B LTR ERV1 1 303 -209 4 1757 198 0 0 0 chr3 153695063 153695085 -5904698 + (CCCCAG)n Simple_repeat Simple_repeat 1 22 0 4 1757 3902 50 58 0 chr3 153695085 153695274 -5904509 + RLTR1B LTR ERV1 304 510 -2 4 1757 2476 284 88 50 chr3 153695274 153696274 -5903509 - L1_Mur3 LINE L1 -1494 4386 3319 4 1757 977 239 9 0 chr3 153696274 153696487 -5903296 - B3 SINE B2 0 216 2 4 1757 2476 300 75 55 chr3 153696487 153697503 -5902280 - L1_Mur3 LINE L1 -2562 3318 1514 4 1757 2718 147 39 89 chr3 153697506 153697677 -5902106 - RMER15 LTR ERVL 0 575 402 4 1757 261 83 0 0 chr3 153697677 153697713 -5902070 + (CCCTAA)n Simple_repeat Simple_repeat 5 40 0 4 1757 2718 147 39 89 chr3 153697713 153698139 -5901644 - RMER15 LTR ERVL -174 401 10 4 1757 317 287 116 37 chr3 153698154 153698550 -5901233 - L1_Rod LINE L1 -4336 1511 1087 4 1757 593 279 38 11 chr3 153698671 153698856 -5900927 - B3A SINE B2 -5 193 4 4 1757 240 35 0 0 chr3 153698867 153698896 -5900887 + (T)n Simple_repeat Simple_repeat 1 29 0 4 1757 1108 88 0 13 chr3 153698896 153699046 -5900737 - B1_Mus1 SINE Alu 0 148 1 4 1757 731 245 129 31 chr3 153699157 153699444 -5900339 + RMER21B LTR ERV1 253 567 -275 4 1757 2092 69 0 62 chr3 153699857 153700149 -5899634 + L1_Mus1 LINE L1 6294 6567 0 4 1757 860 282 58 20 chr3 153701569 153701862 -5897921 + MTE2a LTR MaLR 76 379 0 4 1757 891 35 0 0 chr3 153701885 153702001 -5897782 + B1_Mm SINE Alu 1 116 -31 4 1757 207 0 0 0 chr3 153702001 153702024 -5897759 + (CCA)n Simple_repeat Simple_repeat 1 23 0 4 1757 325 328 45 25 chr3 153702274 153702474 -5897309 - MamRep605 Unknown Unknown -222 654 451 4 1757 897 133 7 0 chr3 153702969 153703119 -5896664 - B2_Mm1t SINE B2 0 193 43 4 1757 3192 98 2 10 chr3 153703139 153703678 -5896105 + RLTR1D LTR ERV1 62 556 -49 4 1757 315 82 0 20 chr3 153703682 153703732 -5896051 - B2_Mm2 SINE B2 -138 57 9 4 1757 263 319 68 77 chr3 153704047 153704295 -5895488 - L1MB7 LINE L1 -3 6171 5926 4 1757 2656 134 9 19 chr3 153705155 153705580 -5894203 + MTC LTR MaLR 1 421 0 4 1757 595 306 103 24 chr3 153705995 153706453 -5893330 + L1MC4 LINE L1 7254 7747 -295 4 1757 1826 70 40 25 chr3 153706796 153706874 -5892909 - ORR1A3 LTR MaLR 0 326 250 4 1757 4141 109 114 35 chr3 153706874 153707557 -5892226 - RMER19A LTR ERVK 0 737 1 4 1757 1826 70 40 25 chr3 153707557 153707756 -5892027 - ORR1A3 LTR MaLR -77 249 45 4 1757 25 31 0 0 chr3 153708025 153708057 -5891726 + AT_rich Low_complexity Low_complexity 1 32 0 4 1757 395 270 78 0 chr3 153708102 153708217 -5891566 - RSINE1 SINE B4 -39 126 3 4 1757 500 263 56 17 chr3 153708832 153709024 -5890759 - B3A SINE B2 0 216 15 4 1757 564 95 0 0 chr3 153709404 153709488 -5890295 + (CA)n Simple_repeat Simple_repeat 2 85 0 4 1757 186 71 0 0 chr3 153711386 153711414 -5888369 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 4 1757 865 142 7 13 chr3 153712086 153712236 -5887547 + URR1A DNA MER1_type 74 222 -4 4 1757 246 197 130 13 chr3 153712329 153712406 -5887377 + MTE2a LTR MaLR 291 376 -3 4 1757 645 158 0 0 chr3 153713224 153713344 -5886439 + (TG)n Simple_repeat Simple_repeat 1 120 0 4 1757 243 370 10 0 chr3 153713359 153713459 -5886324 - PB1D10 SINE Alu -8 109 9 4 1757 773 97 30 0 chr3 153713483 153713617 -5886166 + (TC)n Simple_repeat Simple_repeat 2 139 0 4 1757 347 211 11 0 chr3 153713616 153713706 -5886077 + (TA)n Simple_repeat Simple_repeat 2 92 0 4 1757 21 0 0 0 chr3 153713746 153713767 -5886016 + AT_rich Low_complexity Low_complexity 1 21 0 4 1757 418 327 55 14 chr3 153714408 153714628 -5885155 + RMER15 LTR ERVL 347 575 0 4 1757 495 201 23 12 chr3 153715749 153715920 -5883863 + (TG)n Simple_repeat Simple_repeat 2 174 0 4 1757 216 119 48 0 chr3 153715931 153715973 -5883810 + (TG)n Simple_repeat Simple_repeat 1 44 0 4 1757 238 296 0 40 chr3 153716761 153716835 -5882948 + (CAGGG)n Simple_repeat Simple_repeat 3 73 0 4 1757 496 264 48 0 chr3 153717118 153717243 -5882540 + RSINE1 SINE B4 16 146 -19 4 1757 282 116 0 0 chr3 153717272 153717315 -5882468 + (ATG)n Simple_repeat Simple_repeat 3 45 0 4 1757 186 324 111 72 chr3 153717343 153717496 -5882287 - MER5A DNA MER1_type -30 159 1 4 1757 475 236 55 0 chr3 153718115 153718242 -5881541 + Lx5 LINE L1 6897 7030 -20 4 1757 2010 242 5 15 chr3 153718320 153718730 -5881053 - Lx5 LINE L1 -105 6945 6540 4 1757 818 244 81 77 chr3 153718753 153719205 -5880578 - RMER20B LTR ERVK -25 602 90 4 1757 2350 197 11 28 chr3 153719304 153719769 -5880014 - Lx5 LINE L1 -502 6548 6092 4 1757 1097 155 10 5 chr3 153719764 153719958 -5879825 + Lx5 LINE L1 5884 6078 -972 4 1757 237 98 0 0 chr3 153720748 153720789 -5878994 + (TCTG)n Simple_repeat Simple_repeat 2 42 0 4 1757 261 120 52 26 chr3 153720804 153720843 -5878940 + (TCTCTG)n Simple_repeat Simple_repeat 1 40 0 4 1757 954 71 0 0 chr3 153720843 153720970 -5878813 + (TCCC)n Simple_repeat Simple_repeat 3 129 0 4 1757 871 94 58 5 chr3 153720970 153721177 -5878606 + (TCTCTG)n Simple_repeat Simple_repeat 1 218 0 4 1757 336 244 179 29 chr3 153721839 153722012 -5877771 - Lx8 LINE L1 0 7473 7275 4 1757 791 112 8 0 chr3 153722237 153722362 -5877421 + (TTCC)n Simple_repeat Simple_repeat 2 127 0 4 1757 257 0 0 29 chr3 153722364 153722398 -5877385 + (TTCTC)n Simple_repeat Simple_repeat 3 35 0 4 1757 542 232 114 20 chr3 153722421 153722623 -5877160 - ID_B1 SINE B4 -3 221 1 4 1757 232 296 61 12 chr3 153723076 153723158 -5876625 - L2b LINE L2 -4 3371 3286 4 1757 680 230 50 27 chr3 153723337 153723556 -5876227 + ID_B1 SINE B4 1 224 0 4 1757 1371 71 25 0 chr3 153724611 153724809 -5874974 - Lx3_Mus LINE L1 -813 6196 5994 4 1757 1805 90 4 0 chr3 153724810 153725043 -5874740 + Lx3_Mus LINE L1 6660 6893 -116 4 1757 558 79 0 0 chr3 153725074 153725150 -5874633 + (GAAA)n Simple_repeat Simple_repeat 2 77 0 4 1757 278 253 76 0 chr3 153726106 153726185 -5873598 + B4A SINE B4 13 97 -195 4 1757 782 250 11 28 chr3 153726229 153726410 -5873373 + B4A SINE B4 109 286 -6 4 1757 321 68 0 0 chr3 153726440 153726484 -5873299 + (CA)n Simple_repeat Simple_repeat 2 45 0 4 1757 1046 173 66 5 chr3 153726995 153727193 -5872590 - B3 SINE B2 -5 211 2 4 1757 261 0 0 0 chr3 153728530 153728559 -5871224 + (TG)n Simple_repeat Simple_repeat 1 29 0 4 1757 22 0 0 0 chr3 153728611 153728633 -5871150 + AT_rich Low_complexity Low_complexity 1 22 0 4 1757 479 251 0 22 chr3 153729243 153729936 -5869847 + (TG)n Simple_repeat Simple_repeat 1 677 0 4 1757 500 244 0 22 chr3 153729953 153730137 -5869646 + (TG)n Simple_repeat Simple_repeat 1 180 0 4 1757 449 249 0 22 chr3 153730153 153730334 -5869449 + (TG)n Simple_repeat Simple_repeat 1 177 0 4 1757 207 297 16 0 chr3 153730335 153730399 -5869384 + (TATG)n Simple_repeat Simple_repeat 4 68 0 4 1757 234 291 77 26 chr3 153730402 153730557 -5869226 - RSINE1 SINE B4 0 165 3 4 1757 344 238 162 0 chr3 153730569 153730674 -5869109 - B1F SINE Alu -11 138 17 4 1757 554 289 66 33 chr3 153730773 153731041 -5868742 + ORR1E LTR MaLR 7 308 -71 4 1757 711 273 64 122 chr3 153731819 153732269 -5867514 - Lx9 LINE L1 0 7644 7221 4 1757 223 225 81 0 chr3 153732393 153732504 -5867279 + (TCTA)n Simple_repeat Simple_repeat 3 122 0 4 1757 3394 35 2 5 chr3 153733003 153733404 -5866379 - MTB LTR MaLR 0 400 1 4 1757 497 264 6 44 chr3 153733548 153733730 -5866053 - MTEb LTR MaLR -6 373 199 4 1757 199 87 0 61 chr3 153733737 153733786 -5865997 + (TGGGGG)n Simple_repeat Simple_repeat 2 47 0 4 1757 406 289 65 0 chr3 153733802 153733954 -5865829 - MTEb LTR MaLR -191 188 5 4 1757 321 26 0 0 chr3 153734073 153734111 -5865672 + (TG)n Simple_repeat Simple_repeat 1 38 0 4 1757 411 21 0 0 chr3 153734111 153734158 -5865625 + (GA)n Simple_repeat Simple_repeat 1 48 0 4 1757 417 262 67 60 chr3 153734213 153734347 -5865436 + ID_B1 SINE B4 82 216 -8 4 1757 415 310 38 60 chr3 153734373 153734558 -5865225 + B3A SINE B2 2 182 -16 4 1757 727 264 74 8 chr3 153735636 153735892 -5863891 - L1MB7 LINE L1 -10 6174 5902 4 1757 189 107 0 0 chr3 153735968 153735996 -5863787 + (T)n Simple_repeat Simple_repeat 1 28 0 4 1757 1223 34 7 0 chr3 153735996 153736142 -5863641 - B1_Mus2 SINE Alu 0 147 1 4 1757 273 339 8 8 chr3 153736933 153737058 -5862725 + (TATG)n Simple_repeat Simple_repeat 4 128 0 4 1757 277 333 0 68 chr3 153737137 153737419 -5862364 + (TATG)n Simple_repeat Simple_repeat 1 262 0 4 1757 213 351 60 0 chr3 153737400 153737568 -5862215 + (CATG)n Simple_repeat Simple_repeat 3 180 0 4 1757 426 338 43 17 chr3 153737612 153737847 -5861936 - B4A SINE B4 -3 289 49 4 1757 435 19 0 0 chr3 153737874 153737926 -5861857 + (TC)n Simple_repeat Simple_repeat 2 53 0 4 1757 24 0 0 0 chr3 153738028 153738052 -5861731 + AT_rich Low_complexity Low_complexity 1 24 0 4 1757 423 0 0 0 chr3 153738327 153738374 -5861409 + (TA)n Simple_repeat Simple_repeat 2 48 0 4 1757 572 0 15 0 chr3 153738374 153738442 -5861341 + (TC)n Simple_repeat Simple_repeat 2 70 0 4 1757 207 0 0 0 chr3 153738442 153738464 -5861319 + (TG)n Simple_repeat Simple_repeat 2 24 0 5 1757 614 264 13 20 chr3 153738466 153738617 -5861166 - B3A SINE B2 -48 150 1 5 1757 531 0 0 0 chr3 153739245 153739304 -5860479 + (TC)n Simple_repeat Simple_repeat 2 60 0 5 1757 343 270 57 63 chr3 153739314 153739472 -5860311 - MTEa LTR MaLR -62 317 161 5 1757 411 21 0 0 chr3 153740366 153740414 -5859369 + (CA)n Simple_repeat Simple_repeat 1 48 0 5 1757 204 330 162 30 chr3 153740908 153741142 -5858641 - L3 LINE CR1 -2180 2309 2045 5 1757 477 0 0 0 chr3 153741276 153741329 -5858454 + (TG)n Simple_repeat Simple_repeat 1 53 0 5 1757 810 21 0 0 chr3 153741476 153741572 -5858211 + (CATCC)n Simple_repeat Simple_repeat 2 97 0 5 1757 1036 296 7 30 chr3 153742976 153743275 -5856508 + B4A SINE B4 1 292 0 5 1757 21 0 0 0 chr3 153743355 153743376 -5856407 + AT_rich Low_complexity Low_complexity 1 21 0 5 1757 266 273 50 20 chr3 153744469 153744504 -5855279 + B4A SINE B4 48 85 -207 5 1757 293 255 9 76 chr3 153744504 153744653 -5855130 + B1F2 SINE Alu 2 138 -11 5 1757 2003 174 79 8 chr3 153746721 153747114 -5852669 + MTC LTR MaLR 1 421 0 5 1757 402 74 0 0 chr3 153747183 153747237 -5852546 + (TTCC)n Simple_repeat Simple_repeat 3 56 0 5 1757 942 35 0 0 chr3 153747237 153747351 -5852432 + (TCCCC)n Simple_repeat Simple_repeat 5 118 0 5 1757 621 0 0 0 chr3 153747351 153747419 -5852364 + (TTTTC)n Simple_repeat Simple_repeat 2 70 0 5 219 1074 67 0 0 chr3 153747419 153747554 -5852229 - B1_Mus2 SINE Alu -12 135 1 5 1758 347 341 70 6 chr3 153747812 153747983 -5851800 - MLT1J1 LTR MaLR -262 182 1 5 1758 501 81 22 22 chr3 153748597 153748686 -5851097 + (GGAA)n Simple_repeat Simple_repeat 4 92 0 5 1758 186 43 0 0 chr3 153748954 153748977 -5850806 + (CA)n Simple_repeat Simple_repeat 2 24 0 5 1758 567 234 68 47 chr3 153748986 153749134 -5850649 - MTEb LTR MaLR -228 151 1 5 1758 441 125 12 15 chr3 153749287 153749369 -5850414 + B3A SINE B2 3 82 -113 5 1758 483 163 0 0 chr3 153749369 153749492 -5850291 + (CA)n Simple_repeat Simple_repeat 2 124 0 5 1758 281 55 0 85 chr3 153750008 153750067 -5849716 - L1_Mus4 LINE L1 -2 6634 6581 5 1758 342 221 48 0 chr3 153750305 153750409 -5849374 - PB1D10 SINE Alu -8 109 1 5 1758 245 300 0 14 chr3 153751126 153751197 -5848586 + (TG)n Simple_repeat Simple_repeat 1 70 0 5 1758 487 311 35 23 chr3 153751203 153751374 -5848409 - B4A SINE B4 -8 284 112 5 1758 376 337 74 37 chr3 153753524 153753740 -5846043 + B4 SINE B4 64 287 -5 5 1758 195 42 0 0 chr3 153754752 153754776 -5845007 + (A)n Simple_repeat Simple_repeat 1 24 0 5 1758 21 0 0 0 chr3 153757359 153757380 -5842403 + AT_rich Low_complexity Low_complexity 1 21 0 5 1758 201 147 0 0 chr3 153758388 153758422 -5841361 + (TAA)n Simple_repeat Simple_repeat 2 35 0 5 1758 1578 190 91 9 chr3 153758425 153758765 -5841018 + ORR1D1 LTR MaLR 3 370 -4 5 1758 939 245 51 63 chr3 153758767 153759102 -5840681 - ORR1D2 LTR MaLR -39 331 1 5 1758 324 0 0 0 chr3 153759102 153759138 -5840645 + (A)n Simple_repeat Simple_repeat 1 36 0 5 1758 467 277 41 117 chr3 153759189 153759368 -5840415 - B3A SINE B2 -16 182 18 5 1758 2693 130 26 30 chr3 153759368 153759829 -5839954 - RMER6B LTR ERVK -2 459 1 5 1758 467 277 41 117 chr3 153759829 153759845 -5839938 - B3A SINE B2 -181 17 2 5 1758 373 226 244 0 chr3 153760668 153760783 -5839000 - B3 SINE B2 -10 206 64 5 1758 221 291 0 0 chr3 153761824 153761879 -5837904 + GA-rich Low_complexity Low_complexity 5 59 0 5 1758 341 22 0 21 chr3 153761983 153762030 -5837753 + (TG)n Simple_repeat Simple_repeat 2 47 0 5 1758 635 253 62 16 chr3 153762045 153762238 -5837545 - B4 SINE B4 -83 209 8 5 1758 546 128 0 0 chr3 153763338 153763432 -5836351 + (CA)n Simple_repeat Simple_repeat 1 94 0 5 1758 22 0 0 0 chr3 153763491 153763513 -5836270 + AT_rich Low_complexity Low_complexity 1 22 0 5 1758 333 310 40 0 chr3 153763942 153764042 -5835741 - PB1D7 SINE Alu -16 104 1 5 1758 297 292 49 24 chr3 153767053 153767176 -5832607 + L2 LINE L2 1929 2054 -1365 5 1758 23 68 0 0 chr3 153768096 153768140 -5831643 + AT_rich Low_complexity Low_complexity 1 44 0 5 1758 614 210 48 14 chr3 153768419 153768564 -5831219 + ID_B1 SINE B4 55 204 -20 5 1758 336 276 6 38 chr3 153768669 153768827 -5830956 + GA-rich Low_complexity Low_complexity 3 155 0 5 1758 27 0 0 0 chr3 153769626 153769653 -5830130 + AT_rich Low_complexity Low_complexity 1 27 0 5 1758 300 269 0 15 chr3 153769920 153769988 -5829795 - ID_B1 SINE B4 -3 221 155 5 1758 1197 261 26 10 chr3 153769992 153770305 -5829478 + MTD LTR MaLR 1 318 -101 5 1758 386 304 121 43 chr3 153770343 153770484 -5829299 - ID_B1 SINE B4 -63 161 10 5 1758 1667 37 0 0 chr3 153771810 153772001 -5827782 - B2_Mm1a SINE B2 -2 191 1 5 1758 196 333 80 11 chr3 153772272 153772360 -5827423 + MER5A DNA MER1_type 46 139 -50 5 1758 394 334 181 22 chr3 153772526 153772841 -5826942 - MLT1A0 LTR MaLR 0 365 1 5 1758 2173 261 120 19 chr3 153772882 153773442 -5826341 - RCHARR1 DNA MER1_type 0 974 355 5 1758 324 0 0 0 chr3 153773442 153773478 -5826305 + (GA)n Simple_repeat Simple_repeat 2 37 0 5 1758 2173 261 120 19 chr3 153773478 153773794 -5825989 - RCHARR1 DNA MER1_type -620 354 11 5 1758 384 119 0 0 chr3 153773894 153773953 -5825830 + (CATA)n Simple_repeat Simple_repeat 2 60 0 5 1758 1116 282 177 40 chr3 153775396 153775917 -5823866 + Lx8 LINE L1 6877 7468 -5 5 1758 425 293 57 7 chr3 153776796 153776937 -5822846 + B1F SINE Alu 2 149 0 5 1758 23 33 0 0 chr3 153776946 153776976 -5822807 + AT_rich Low_complexity Low_complexity 1 30 0 5 1758 3024 98 27 0 chr3 153777304 153777745 -5822038 - L1_Mus4 LINE L1 -2 6634 6182 5 1758 225 0 0 0 chr3 153778292 153778317 -5821466 + (TG)n Simple_repeat Simple_repeat 1 25 0 5 1758 609 239 226 0 chr3 153778556 153778790 -5820993 + B4 SINE B4 1 287 -5 5 1758 300 111 0 0 chr3 153779495 153779540 -5820243 + (TG)n Simple_repeat Simple_repeat 1 45 0 5 1758 900 272 81 16 chr3 153779570 153779828 -5819955 - B4 SINE B4 -16 276 2 5 1758 411 21 0 0 chr3 153780317 153780365 -5819418 + (CA)n Simple_repeat Simple_repeat 1 48 0 5 1758 22 0 0 0 chr3 153780400 153780422 -5819361 + AT_rich Low_complexity Low_complexity 1 22 0 5 1758 306 0 0 0 chr3 153780424 153780458 -5819325 + (GA)n Simple_repeat Simple_repeat 1 34 0 5 1758 266 224 111 56 chr3 153780461 153780551 -5819232 - RSINE1 SINE B4 -44 121 27 5 1758 283 234 98 9 chr3 153781052 153781164 -5818619 - L1MEc LINE L1 -4605 1795 1674 5 1758 869 239 46 54 chr3 153781991 153782268 -5817515 - ORR1E LTR MaLR -78 301 1 5 1758 325 281 113 34 chr3 153782303 153782480 -5817303 + L2a LINE L2 3225 3415 -11 5 1758 395 290 19 0 chr3 153782744 153782851 -5816932 + PB1D7 SINE Alu 5 113 -7 5 1758 485 210 3 58 chr3 153783453 153784028 -5815755 + CT-rich Low_complexity Low_complexity 1 543 0 5 1758 261 269 83 31 chr3 153784284 153784380 -5815403 + L2a LINE L2 3311 3411 -15 5 1758 594 148 0 0 chr3 153784935 153785036 -5814747 + (GGGA)n Simple_repeat Simple_repeat 4 104 0 5 1758 323 255 43 92 chr3 153785167 153785331 -5814452 + HAL1-2a_MD LINE L1 2347 2502 -522 5 1758 344 188 17 129 chr3 153785775 153785891 -5813892 + MT2B LTR ERVL 162 264 -337 5 1758 939 46 15 8 chr3 153785794 153785926 -5813857 + B1_Mus1 SINE Alu 15 147 -1 5 1758 243 0 0 0 chr3 153786161 153786188 -5813595 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 5 1758 624 14 0 0 chr3 153786323 153786396 -5813387 + (CATAT)n Simple_repeat Simple_repeat 1 73 0 5 1758 4188 167 130 15 chr3 153786481 153787295 -5812488 - RMER13B LTR ERVK 0 908 1 5 1758 4474 96 36 6 chr3 153787300 153787937 -5811846 - L1_Mus4 LINE L1 -45 6591 5936 5 1758 3031 160 209 92 chr3 153788946 153789716 -5810067 - RMER13A LTR ERVK 0 860 1 5 1758 562 278 210 11 chr3 153789896 153790172 -5809611 + MTEa LTR MaLR 6 336 -43 5 1758 214 330 21 32 chr3 153791192 153791286 -5808497 + GA-rich Low_complexity Low_complexity 4 96 0 5 1758 312 27 0 0 chr3 153791832 153791869 -5807914 + (TG)n Simple_repeat Simple_repeat 1 37 0 5 1758 837 255 115 77 chr3 153792007 153792372 -5807411 + MTE2a LTR MaLR 1 379 0 5 1758 872 212 33 33 chr3 153792377 153792587 -5807196 - MTD LTR MaLR 0 419 210 5 1758 346 219 0 0 chr3 153792609 153792682 -5807101 - MTD LTR MaLR -346 73 1 5 1758 501 17 0 0 chr3 153793340 153793398 -5806385 + (GGAA)n Simple_repeat Simple_repeat 3 60 0 5 1758 751 236 55 25 chr3 153794853 153795053 -5804730 + B4A SINE B4 83 288 -4 5 1758 217 297 11 11 chr3 153795064 153795241 -5804542 + (CATATA)n Simple_repeat Simple_repeat 4 180 0 5 1758 216 67 0 0 chr3 153795953 153795983 -5803800 + (A)n Simple_repeat Simple_repeat 1 30 0 5 1758 336 48 0 0 chr3 153796032 153796074 -5803709 + (T)n Simple_repeat Simple_repeat 1 42 0 5 1758 4527 57 5 0 chr3 153796124 153796682 -5803101 - L1Md_F2 LINE L1 -4 6578 6018 5 1758 363 136 0 0 chr3 153796704 153796763 -5803020 + (TG)n Simple_repeat Simple_repeat 1 59 0 5 1758 377 303 19 50 chr3 153796763 153796923 -5802860 - RSINE1 SINE B4 0 165 11 5 1758 325 271 142 47 chr3 153797286 153797476 -5802307 - B4 SINE B4 0 292 85 5 1758 306 0 0 0 chr3 153797476 153797510 -5802273 + (TG)n Simple_repeat Simple_repeat 1 34 0 5 1758 635 300 35 31 chr3 153797570 153797690 -5802093 - B4A SINE B4 -1 291 175 5 1758 202 29 57 0 chr3 153797690 153797725 -5802058 + (TA)n Simple_repeat Simple_repeat 2 38 0 5 1758 635 300 35 31 chr3 153797725 153797890 -5801893 - B4A SINE B4 -118 174 6 5 1758 358 269 28 0 chr3 153798165 153798273 -5801510 - PB1D7 SINE Alu -7 113 3 6 1758 638 265 73 107 chr3 153798330 153798630 -5801153 - B4 SINE B4 -2 290 1 6 1758 31 0 0 0 chr3 153798745 153798776 -5801007 + AT_rich Low_complexity Low_complexity 1 31 0 6 1758 1501 272 39 65 chr3 153798891 153799458 -5800325 - Lx9 LINE L1 -148 7496 6945 6 1758 405 0 0 0 chr3 153799757 153799802 -5799981 + (TG)n Simple_repeat Simple_repeat 1 45 0 6 1758 231 104 29 29 chr3 153800242 153800265 -5799518 + A-rich Low_complexity Low_complexity 1 23 0 6 1758 1250 34 0 13 chr3 153800265 153800414 -5799369 + B1_Mus2 SINE Alu 1 147 0 6 1758 231 104 29 29 chr3 153800414 153800459 -5799324 + A-rich Low_complexity Low_complexity 24 68 0 6 1758 286 330 37 92 chr3 153800493 153800710 -5799073 + MER2 DNA MER2_type 141 345 0 6 1758 255 281 88 7 chr3 153801606 153801742 -5798041 + L1MA7 LINE L1 6139 6285 -6 6 1758 279 0 0 0 chr3 153802671 153802702 -5797081 + (CAAT)n Simple_repeat Simple_repeat 2 32 0 6 1758 432 55 0 0 chr3 153802702 153802757 -5797026 + (TC)n Simple_repeat Simple_repeat 1 55 0 6 1758 186 236 0 0 chr3 153802747 153802802 -5796981 + CT-rich Low_complexity Low_complexity 1 55 0 6 1758 643 206 24 0 chr3 153802803 153802929 -5796854 - ID_B1 SINE B4 -2 222 94 6 1758 571 196 0 98 chr3 153804769 153804927 -5794856 + B1_Mur1 SINE Alu 2 143 -6 6 1758 222 37 0 0 chr3 153804927 153804954 -5794829 + (CAGA)n Simple_repeat Simple_repeat 4 30 0 6 1758 421 180 23 24 chr3 153806410 153806511 -5793272 + L1MA4 LINE L1 5791 5920 -380 6 1758 196 154 0 37 chr3 153807449 153807503 -5792280 + (TTTA)n Simple_repeat Simple_repeat 2 53 0 6 1758 393 288 0 0 chr3 153807566 153807807 -5791976 + (TG)n Simple_repeat Simple_repeat 1 241 0 6 1758 561 250 0 0 chr3 153808348 153808468 -5791315 - RSINE1 SINE B4 -37 128 9 6 1758 779 259 11 11 chr3 153809035 153809222 -5790561 + B3A SINE B2 1 187 -11 6 1758 688 252 51 51 chr3 153809272 153809489 -5790294 + ID_B1 SINE B4 1 217 -7 6 1758 685 274 30 49 chr3 153809628 153809947 -5789836 + MTD LTR MaLR 1 323 -98 6 1758 399 204 76 59 chr3 153809961 153810095 -5789688 + MTD LTR MaLR 282 405 -14 6 1758 21 71 0 0 chr3 153810199 153810241 -5789542 + AT_rich Low_complexity Low_complexity 1 42 0 6 1758 339 296 172 34 chr3 153811784 153812022 -5787761 - MLT1B LTR MaLR -19 371 85 6 1758 1274 265 49 6 chr3 153812727 153813054 -5786729 - Lx8 LINE L1 -763 6710 6370 6 1758 21 0 0 0 chr3 153813156 153813177 -5786606 + AT_rich Low_complexity Low_complexity 1 21 0 6 1758 224 237 10 0 chr3 153814312 153814404 -5785379 + (TG)n Simple_repeat Simple_repeat 2 94 0 6 1758 345 47 0 0 chr3 153814404 153814447 -5785336 + (GA)n Simple_repeat Simple_repeat 1 43 0 6 1758 752 294 81 81 chr3 153814553 153815046 -5784737 - MLT1D LTR MaLR -11 494 2 6 1758 2422 123 5 3 chr3 153816431 153816798 -5782985 - RLTR17 LTR ERVK -324 368 1 6 1758 5745 191 60 67 chr3 153816798 153818327 -5781456 - RMER3D-int LTR ERVK 0 2842 1324 6 1758 1271 220 19 16 chr3 153818392 153818715 -5781068 - RMER3D-int LTR ERVK -1504 1338 1015 6 1758 2135 194 76 65 chr3 153818753 153819348 -5780435 - RMER3D-int LTR ERVK -2232 610 10 6 1758 1152 155 133 4 chr3 153819391 153819654 -5780129 - RLTR17 LTR ERVK -82 610 314 6 1758 556 299 7 7 chr3 153819747 153819882 -5779901 - RSINE1 SINE B4 -29 136 2 6 1758 354 45 0 0 chr3 153819890 153819934 -5779849 + (TTCA)n Simple_repeat Simple_repeat 1 44 0 6 1758 26003 177 45 6 chr3 153819934 153822226 -5777557 - Lx5 LINE L1 -16 7034 4636 6 1758 258 56 0 0 chr3 153822226 153822262 -5777521 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 6 1758 26003 147 28 9 chr3 153822262 153824799 -5774984 - Lx5 LINE L1 -1242 4635 2060 6 1758 183 129 0 0 chr3 153824799 153824830 -5774953 + (TG)n Simple_repeat Simple_repeat 1 31 0 6 1758 26003 147 28 9 chr3 153824830 153825397 -5774386 - Lx5 LINE L1 -3818 2059 1487 6 1758 195 42 0 0 chr3 153825397 153825421 -5774362 + (TTG)n Simple_repeat Simple_repeat 1 24 0 6 1758 26003 203 19 9 chr3 153825421 153825994 -5773789 - Lx5 LINE L1 -4391 1486 899 6 1758 224 299 40 20 chr3 153827286 153827385 -5772398 + MIR SINE MIR 108 208 -54 6 1758 2670 114 33 12 chr3 153827671 153828070 -5771713 + MTB_Mm LTR MaLR 1 407 0 6 1758 419 323 8 38 chr3 153828274 153828406 -5771377 - RSINE1 SINE B4 -36 129 2 6 1758 270 320 14 19 chr3 153828864 153829010 -5770773 + MIR SINE MIR 72 225 -43 6 1758 326 204 0 11 chr3 153829453 153829542 -5770241 + (CA)n Simple_repeat Simple_repeat 1 88 0 6 1758 1048 259 51 62 chr3 153829542 153829896 -5769887 - Lx8 LINE L1 -147 7326 6977 6 1758 4816 71 0 8 chr3 153830119 153830742 -5769041 - L1Md_F2 LINE L1 0 6582 5965 6 1758 3560 50 0 0 chr3 153830742 153831181 -5768602 + L1_Mm LINE L1 4036 4474 -1409 6 1758 507 260 148 105 chr3 153831181 153831533 -5768250 + MTD LTR MaLR 10 376 -3 6 1758 219 343 0 14 chr3 153832034 153832105 -5767678 - ID2 SINE ID -9 74 5 6 1758 451 268 47 108 chr3 153832769 153832982 -5766801 - MLT1A1 LTR MaLR -29 379 180 6 1758 302 43 43 0 chr3 153834266 153834313 -5765470 + (TTTTG)n Simple_repeat Simple_repeat 2 50 0 6 1758 1083 59 0 0 chr3 153834313 153834448 -5765335 - B1_Mm SINE Alu 0 147 13 6 1758 272 258 31 50 chr3 153834353 153834512 -5765271 - ORR1B1-int LTR MaLR -755 754 599 6 1758 570 265 11 85 chr3 153836244 153836421 -5763362 + RSINE1 SINE B4 2 165 0 6 1758 3528 23 5 0 chr3 153837379 153837773 -5762010 + MTA_Mm LTR MaLR 1 396 0 6 1758 215 306 43 17 chr3 153837804 153837913 -5761870 + PB1 SINE Alu 1 118 -2 6 1758 592 222 58 22 chr3 153838770 153838908 -5760875 - B3 SINE B2 0 216 74 6 1758 3717 62 20 16 chr3 153838924 153839418 -5760365 + LTRIS2 LTR ERV1 69 564 0 6 1758 339 256 69 76 chr3 153839418 153839492 -5760291 - B3A SINE B2 -125 73 1 6 1758 447 231 139 22 chr3 153840025 153840162 -5759621 - MTEb LTR MaLR -226 153 1 6 1758 716 255 122 15 chr3 153840464 153840727 -5759056 + B4A SINE B4 2 292 0 6 1758 246 193 0 0 chr3 153840727 153840784 -5758999 + (CA)n Simple_repeat Simple_repeat 1 57 0 6 1758 333 0 0 0 chr3 153840930 153840967 -5758816 + (CAG)n Simple_repeat Simple_repeat 3 39 0 6 1758 399 41 0 0 chr3 153842110 153842159 -5757624 + (GGGA)n Simple_repeat Simple_repeat 4 52 0 6 1758 715 201 6 6 chr3 153842266 153842441 -5757342 + CT-rich Low_complexity Low_complexity 1 175 0 6 1758 533 295 0 62 chr3 153843044 153843174 -5756609 - B1F SINE Alu -9 140 19 6 1758 746 125 23 0 chr3 153843184 153843312 -5756471 + (TTTTC)n Simple_repeat Simple_repeat 3 133 0 6 1758 2483 88 17 3 chr3 153843328 153843679 -5756104 - L1_Mus3 LINE L1 -6 6632 6277 6 1758 1595 295 121 23 chr3 153844109 153844989 -5754794 - L1MA7 LINE L1 -2 6289 5324 6 1758 242 213 0 21 chr3 153845898 153845946 -5753837 - L2b LINE L2 -6 3369 3323 6 1758 450 36 0 0 chr3 153846413 153846469 -5753314 + (TG)n Simple_repeat Simple_repeat 1 56 0 6 1758 222 302 0 0 chr3 153846480 153846543 -5753240 + (TATG)n Simple_repeat Simple_repeat 3 65 0 6 1758 467 315 0 16 chr3 153846543 153846672 -5753111 - B4A SINE B4 -2 290 164 6 1758 937 277 139 38 chr3 153847988 153848570 -5751213 + L1_Mur3 LINE L1 1696 2336 -3544 6 1758 1234 61 0 0 chr3 153849231 153849379 -5750404 + B1_Mus1 SINE Alu 1 148 0 6 1758 327 104 0 0 chr3 153849379 153849427 -5750356 + (A)n Simple_repeat Simple_repeat 1 48 0 6 1758 4338 161 89 62 chr3 153849567 153850529 -5749254 - RLTR25A LTR ERVK -115 988 1 6 1758 276 278 19 76 chr3 153850573 153850678 -5749105 + MLT1A1 LTR MaLR 11 109 -299 6 1758 893 231 15 35 chr3 153850783 153850985 -5748798 + B3A SINE B2 1 198 0 6 1758 490 265 60 149 chr3 153850991 153851239 -5748544 - MTE2a LTR MaLR -153 226 1 6 1758 528 236 7 54 chr3 153852570 153852718 -5747065 - B4 SINE B4 -86 206 66 6 1758 320 276 50 11 chr3 153852878 153853005 -5746778 + B1F1 SINE Alu 10 140 -9 6 1758 372 333 52 0 chr3 153853699 153853834 -5745949 + B4A SINE B4 38 179 -113 6 1758 513 71 0 0 chr3 153854145 153854215 -5745568 + (TG)n Simple_repeat Simple_repeat 1 70 0 6 1758 261 0 0 0 chr3 153854215 153854243 -5745540 + (GA)n Simple_repeat Simple_repeat 1 29 0 6 1758 273 252 0 0 chr3 153854244 153854347 -5745436 + (TG)n Simple_repeat Simple_repeat 1 103 0 6 1758 1954 158 19 36 chr3 153854347 153854761 -5745022 - RMER17C LTR ERVK -3 407 1 6 1758 807 168 0 0 chr3 153854761 153854984 -5744799 + (TG)n Simple_repeat Simple_repeat 1 223 0 6 1758 817 249 105 37 chr3 153854988 153855277 -5744506 - B4A SINE B4 0 292 1 6 1758 198 0 0 0 chr3 153855927 153855949 -5743834 + (C)n Simple_repeat Simple_repeat 1 22 0 6 1758 198 91 0 0 chr3 153857073 153857106 -5742677 + (CA)n Simple_repeat Simple_repeat 2 34 0 6 1758 423 332 96 25 chr3 153857866 153858136 -5741647 - B4A SINE B4 0 292 12 6 1758 867 112 0 0 chr3 153858778 153858912 -5740871 + (TG)n Simple_repeat Simple_repeat 2 135 0 6 1758 629 208 17 0 chr3 153859301 153859421 -5740362 + RSINE1 SINE B4 8 129 -36 6 1758 366 154 53 15 chr3 153860126 153860258 -5739525 + (TG)n Simple_repeat Simple_repeat 2 138 0 6 1758 400 165 59 19 chr3 153860305 153860576 -5739207 + (TG)n Simple_repeat Simple_repeat 1 281 0 6 1758 472 245 0 50 chr3 153860689 153860788 -5738995 - B4A SINE B4 -164 128 35 6 1758 412 267 0 0 chr3 153861029 153861119 -5738664 - B1F2 SINE Alu -58 91 2 6 1758 182 293 0 118 chr3 153861938 153862023 -5737760 + L2 LINE L2 35 109 -3310 6 1758 453 369 0 0 chr3 153862112 153862269 -5737514 + (CA)n Simple_repeat Simple_repeat 1 157 0 6 1758 480 274 203 61 chr3 153862445 153862756 -5737027 - ORR1E LTR MaLR 0 359 5 6 1758 204 286 0 0 chr3 153863003 153863087 -5736696 + (TG)n Simple_repeat Simple_repeat 1 84 0 6 1758 853 275 131 16 chr3 153863101 153863345 -5736438 - B4 SINE B4 0 292 21 7 1758 546 343 37 9 chr3 153864073 153864288 -5735495 - MER58B DNA MER1_type 0 341 121 7 1758 292 244 16 87 chr3 153864322 153864448 -5735335 - PB1D10 SINE Alu 0 117 1 7 1758 231 304 50 12 chr3 153864484 153864564 -5735219 + B1F2 SINE Alu 36 118 -31 7 1758 265 333 0 0 chr3 153864532 153864601 -5735182 + B1F2 SINE Alu 48 116 -33 7 1758 233 268 96 67 chr3 153864856 153864960 -5734823 - MER94 DNA AcHobo -25 109 3 7 1758 190 315 56 11 chr3 153865223 153865313 -5734470 - L2 LINE L2 -626 2793 2700 7 1758 270 0 0 0 chr3 153866225 153866255 -5733528 + (TAAA)n Simple_repeat Simple_repeat 4 33 0 7 1758 255 220 0 0 chr3 153866302 153866393 -5733390 + (CA)n Simple_repeat Simple_repeat 1 91 0 7 1758 348 293 25 0 chr3 153866540 153866639 -5733144 - PB1D10 SINE Alu -16 104 1 7 1758 235 247 0 121 chr3 153866566 153866649 -5733134 - B4A SINE B4 -138 154 82 7 1758 921 234 91 0 chr3 153866809 153867006 -5732777 + B3 SINE B2 2 216 0 7 1758 267 299 115 41 chr3 153867522 153867644 -5732139 + B4A SINE B4 66 196 -96 7 1758 249 83 0 0 chr3 153868514 153868550 -5731233 + (TTG)n Simple_repeat Simple_repeat 2 37 0 7 1758 947 218 195 30 chr3 153870107 153870277 -5729506 - ORR1D2 LTR MaLR -2 368 145 7 1758 261 0 0 0 chr3 153870277 153870306 -5729477 + (C)n Simple_repeat Simple_repeat 1 29 0 7 1758 947 218 195 30 chr3 153870306 153870437 -5729346 - ORR1D2 LTR MaLR -226 144 17 7 1758 323 254 14 0 chr3 153871936 153872007 -5727776 - ID SINE ID -152 72 1 7 1758 343 252 56 16 chr3 153872025 153872150 -5727633 - L1MA9 LINE L1 -82 6230 6101 7 1758 251 122 0 20 chr3 153872441 153872491 -5727292 + (TCTCCC)n Simple_repeat Simple_repeat 1 49 0 7 1758 189 0 0 0 chr3 153872732 153872753 -5727030 + (CCCCCA)n Simple_repeat Simple_repeat 4 24 0 7 1758 932 284 113 60 chr3 153872763 153873254 -5726529 - L1MA9 LINE L1 -337 5975 5442 7 1758 305 268 37 0 chr3 153874504 153874586 -5725197 + B4 SINE B4 47 131 -161 7 1758 3823 30 0 0 chr3 153874602 153875040 -5724743 + L1Md_T LINE L1 6145 6582 0 7 1758 195 42 0 0 chr3 153875115 153875139 -5724644 + (A)n Simple_repeat Simple_repeat 1 24 0 7 1758 461 238 21 100 chr3 153875139 153875188 -5724595 + B4 SINE B4 164 214 -78 7 1758 227 31 0 30 chr3 153875188 153875221 -5724562 + (CAAAA)n Simple_repeat Simple_repeat 4 35 0 7 1758 461 238 21 100 chr3 153875221 153875311 -5724472 + B4 SINE B4 215 291 -1 7 1758 656 149 14 9 chr3 153875311 153875532 -5724251 + (CA)n Simple_repeat Simple_repeat 1 222 0 7 1758 268 148 0 169 chr3 153875762 153875827 -5723956 - B1F SINE Alu -31 118 65 7 1758 219 167 0 0 chr3 153875806 153875842 -5723941 - B1F SINE Alu -35 114 79 7 1758 251 216 46 149 chr3 153875987 153876074 -5723709 + MT2B LTR ERVL 180 257 -344 7 1758 677 78 0 0 chr3 153876029 153876119 -5723664 + B1_Mur4 SINE Alu 61 150 0 7 1758 198 0 0 0 chr3 153876119 153876141 -5723642 + (A)n Simple_repeat Simple_repeat 1 22 0 7 1758 231 313 47 103 chr3 153876344 153876459 -5723324 - RMER1C Other Other -1 1341 1234 7 1758 1720 197 125 60 chr3 153876459 153876978 -5722805 - RLTR31_Mur LTR ERVK 0 553 1 7 1758 231 313 47 103 chr3 153876978 153877115 -5722668 - RMER1C Other Other -109 1233 1104 7 1758 500 254 85 21 chr3 153877008 153877149 -5722634 - Lx8 LINE L1 -140 7333 7184 7 1758 216 0 0 0 chr3 153877383 153877407 -5722376 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 7 1758 829 314 38 0 chr3 153877537 153877747 -5722036 + ID_B1 SINE B4 6 223 -1 7 219 238 330 33 82 chr3 153878423 153878545 -5721238 - ORR1E LTR MaLR -167 192 77 7 1759 913 243 89 140 chr3 153878729 153878891 -5720892 + MTE2a LTR MaLR 6 152 -227 7 1759 186 43 0 0 chr3 153878891 153878914 -5720869 + (TGGGGG)n Simple_repeat Simple_repeat 1 23 0 7 1759 913 243 89 140 chr3 153878914 153879076 -5720707 + MTE2a LTR MaLR 153 334 -45 7 1759 1653 42 0 0 chr3 153879076 153879268 -5720515 - B2_Mm1a SINE B2 0 193 2 7 1759 913 243 89 140 chr3 153879268 153879335 -5720448 + MTE2a LTR MaLR 335 377 -2 7 1759 215 247 21 0 chr3 153879714 153879807 -5719976 + (CATATA)n Simple_repeat Simple_repeat 4 98 0 7 1759 1090 140 52 24 chr3 153879810 153880059 -5719724 + RMER17A2 LTR ERVK 214 469 -437 7 1759 228 333 6 35 chr3 153881259 153881510 -5718273 + (GGGTG)n Simple_repeat Simple_repeat 1 243 0 7 1759 216 309 11 48 chr3 153881694 153881881 -5717902 + (AGGTG)n Simple_repeat Simple_repeat 1 180 0 7 1759 313 308 41 0 chr3 153882525 153882694 -5717089 + (TTGGGG)n Simple_repeat Simple_repeat 2 177 0 7 1759 255 271 8 56 chr3 153884031 153884156 -5715627 + (GGGTG)n Simple_repeat Simple_repeat 2 120 0 7 1759 184 260 0 57 chr3 153884515 153884568 -5715215 + MIR SINE MIR 98 147 -61 7 1759 180 176 0 0 chr3 153885424 153885458 -5714325 + CT-rich Low_complexity Low_complexity 3 36 0 7 1759 183 268 89 0 chr3 153885513 153885569 -5714214 - L4 LINE RTE -590 1439 1379 7 1759 219 111 44 0 chr3 153886787 153886832 -5712951 + (CA)n Simple_repeat Simple_repeat 2 48 0 7 1759 309 367 98 31 chr3 153887208 153887433 -5712350 - L1M4 LINE L1 -1112 5034 4795 7 1759 285 270 16 0 chr3 153887486 153887549 -5712234 - B3A SINE B2 -16 182 119 7 1759 2013 171 72 18 chr3 153887570 153887958 -5711825 + MTC LTR MaLR 13 421 0 7 1759 426 184 40 0 chr3 153888113 153888189 -5711594 + B3 SINE B2 1 79 -137 7 1759 425 218 40 0 chr3 153888587 153888688 -5711095 + RSINE1 SINE B4 3 107 -58 7 1759 919 265 31 24 chr3 153888699 153888954 -5710829 + B4 SINE B4 1 257 -35 7 1759 432 0 0 0 chr3 153888955 153889003 -5710780 + (CA)n Simple_repeat Simple_repeat 2 49 0 7 1759 21 0 0 0 chr3 153889810 153889831 -5709952 + AT_rich Low_complexity Low_complexity 1 21 0 7 1759 198 206 0 0 chr3 153890529 153890592 -5709191 + (CA)n Simple_repeat Simple_repeat 2 64 0 7 1759 616 179 9 0 chr3 153890621 153890837 -5708946 + (CA)n Simple_repeat Simple_repeat 1 218 0 7 1759 846 263 95 38 chr3 153890911 153891227 -5708556 + MTE2b LTR MaLR 1 334 -45 7 1759 307 241 12 0 chr3 153891766 153891849 -5707934 + MER53 DNA hAT 2 85 -108 7 1759 237 275 100 83 chr3 153891862 153892092 -5707691 - HAL1 LINE L1 -732 1775 1542 7 1759 1056 43 0 0 chr3 153892493 153892631 -5707152 + (TC)n Simple_repeat Simple_repeat 2 139 0 7 1759 234 0 0 0 chr3 153892647 153892673 -5707110 + (GA)n Simple_repeat Simple_repeat 1 26 0 7 1759 266 284 0 0 chr3 153892713 153892801 -5706982 - L1_Rod LINE L1 -34 5813 5726 7 1759 3694 157 80 16 chr3 153892972 153893702 -5706081 + Lx9 LINE L1 6868 7643 -1 7 1759 515 286 5 111 chr3 153893758 153893966 -5705817 - B4A SINE B4 -1 291 106 7 1759 567 292 39 90 chr3 153894056 153894289 -5705494 + B4A SINE B4 17 237 -55 7 1759 446 171 0 13 chr3 153894383 153894460 -5705323 - Lx9 LINE L1 -698 6946 6871 7 1759 250 304 58 0 chr3 153894461 153894530 -5705253 + B4A SINE B4 217 289 -3 7 1759 690 13 0 0 chr3 153894979 153895058 -5704725 + (TC)n Simple_repeat Simple_repeat 1 79 0 7 1759 3756 139 37 12 chr3 153895244 153895886 -5703897 - Lx2 LINE L1 -1 6996 6339 7 1759 783 256 68 0 chr3 153895962 153896169 -5703614 - ID_B1 SINE B4 -2 222 2 7 1759 24 0 0 0 chr3 153896720 153896744 -5703039 + AT_rich Low_complexity Low_complexity 1 24 0 7 1759 294 341 58 15 chr3 153897508 153897645 -5702138 + L2a LINE L2 3282 3424 -2 7 1759 384 111 0 0 chr3 153898704 153898776 -5701007 + (GA)n Simple_repeat Simple_repeat 1 72 0 7 1759 1471 242 28 50 chr3 153899040 153899436 -5700347 - Lx8 LINE L1 -552 6921 6535 7 1759 649 281 207 10 chr3 153899457 153899769 -5700014 + Lx8 LINE L1 6896 7268 -205 7 1759 1046 101 6 0 chr3 153899772 153899930 -5699853 + (GAAA)n Simple_repeat Simple_repeat 1 159 0 7 1759 353 317 17 57 chr3 153900677 153900854 -5698929 + B3 SINE B2 47 216 0 7 1759 916 150 17 0 chr3 153901488 153901661 -5698122 + T-rich Low_complexity Low_complexity 3 178 0 7 1759 1193 68 0 0 chr3 153901661 153901809 -5697974 - B1_Mus1 SINE Alu 0 148 1 7 1759 255 288 81 131 chr3 153902577 153902737 -5697046 + RSINE1 SINE B4 14 165 0 7 1759 576 0 0 0 chr3 153902743 153902807 -5696976 + (GA)n Simple_repeat Simple_repeat 1 64 0 7 1759 196 30 29 29 chr3 153903004 153903038 -5696745 + (TTTTTG)n Simple_repeat Simple_repeat 2 35 0 7 1759 704 287 69 0 chr3 153905504 153905706 -5694077 - ID_B1 SINE B4 -7 217 2 7 1759 4958 162 37 5 chr3 153907062 153907927 -5691856 - Lx5 LINE L1 -557 6493 5601 7 1759 2791 167 72 6 chr3 153907927 153908451 -5691332 + Lx5 LINE L1 6489 7047 -3 7 1759 420 239 95 22 chr3 153908723 153908860 -5690923 + B3A SINE B2 8 154 -44 7 1759 243 103 0 0 chr3 153908860 153908899 -5690884 + (CA)n Simple_repeat Simple_repeat 1 39 0 7 1759 441 221 47 28 chr3 153908907 153909014 -5690769 - B1F SINE Alu -29 120 12 7 1759 299 256 128 0 chr3 153909439 153909517 -5690266 - PB1D10 SINE Alu -29 88 1 7 1759 621 0 0 0 chr3 153912398 153912467 -5687316 + (GA)n Simple_repeat Simple_repeat 1 69 0 7 1759 265 240 123 71 chr3 153913311 153913511 -5686272 + L1M4 LINE L1 2181 2382 -3764 7 1759 307 314 0 11 chr3 153916066 153916153 -5683630 - ID SINE ID -136 88 3 7 1759 219 211 0 0 chr3 153916737 153916775 -5683008 + (CGTG)n Simple_repeat Simple_repeat 4 41 0 7 1759 369 0 0 0 chr3 153916791 153916832 -5682951 + (TG)n Simple_repeat Simple_repeat 1 41 0 7 1759 516 232 0 0 chr3 153916911 153917062 -5682721 + (TG)n Simple_repeat Simple_repeat 1 151 0 7 1759 747 242 33 58 chr3 153917088 153917329 -5682454 - B4A SINE B4 0 292 58 7 1759 335 236 106 26 chr3 153917433 153917546 -5682237 - B4A SINE B4 -170 122 1 7 1759 397 163 15 58 chr3 153919622 153919759 -5680024 + (CATA)n Simple_repeat Simple_repeat 4 134 0 7 1759 338 128 0 75 chr3 153919797 153919890 -5679893 + CT-rich Low_complexity Low_complexity 2 87 0 7 1759 282 283 0 43 chr3 153920231 153920419 -5679364 + (TA)n Simple_repeat Simple_repeat 1 180 0 7 1759 960 284 108 44 chr3 153922446 153923337 -5676446 + L1MB4 LINE L1 4694 5639 -544 8 1759 248 277 51 57 chr3 153923539 153923696 -5676087 + L1MB4 LINE L1 5981 6136 -44 8 1759 2956 38 0 11 chr3 153923860 153924210 -5675573 - ORR1A1 LTR MaLR 0 346 1 8 1759 616 255 12 58 chr3 153924561 153924732 -5675051 + RSINE1 SINE B4 3 165 0 8 1759 225 260 0 0 chr3 153924753 153924830 -5674953 + (CA)n Simple_repeat Simple_repeat 2 78 0 8 1759 375 23 0 0 chr3 153924834 153924878 -5674905 + (CTA)n Simple_repeat Simple_repeat 1 44 0 8 1759 703 221 28 0 chr3 153924896 153925041 -5674742 - B1_Mur4 SINE Alu 0 150 2 8 1759 292 245 62 21 chr3 153926307 153926403 -5673380 - RLTR24 LTR ERV1 -80 449 350 8 1759 273 307 0 0 chr3 153926625 153926700 -5673083 - RLTR24 LTR ERV1 -454 75 1 8 1759 300 291 156 8 chr3 153927383 153927511 -5672272 - MLT1A LTR MaLR -225 149 3 8 1759 504 0 0 0 chr3 153928594 153928650 -5671133 + (GA)n Simple_repeat Simple_repeat 2 57 0 8 1759 266 293 0 0 chr3 153928662 153928737 -5671046 - ID4_ SINE ID -4 79 5 8 1759 540 276 61 14 chr3 153929421 153929568 -5670215 + RSINE1 SINE B4 12 165 0 8 1759 309 275 68 63 chr3 153929617 153929807 -5669976 + B3A SINE B2 1 191 -7 8 1759 749 256 59 78 chr3 153929830 153930101 -5669682 + B4 SINE B4 27 292 0 8 1759 220 344 54 0 chr3 153930147 153930240 -5669543 + PB1D7 SINE Alu 15 112 -8 8 1759 351 44 0 0 chr3 153933276 153933321 -5666462 + (TTA)n Simple_repeat Simple_repeat 1 45 0 8 1759 313 95 32 0 chr3 153933731 153933794 -5665989 + (TTTTG)n Simple_repeat Simple_repeat 1 65 0 8 1759 180 111 0 0 chr3 153934716 153934743 -5665040 + (TC)n Simple_repeat Simple_repeat 1 27 0 8 1759 240 111 0 0 chr3 153934744 153934780 -5665003 + (TG)n Simple_repeat Simple_repeat 2 37 0 8 1759 378 42 0 0 chr3 153934877 153934925 -5664858 + (TTA)n Simple_repeat Simple_repeat 2 49 0 8 1759 500 311 7 0 chr3 153934953 153935088 -5664695 - B4A SINE B4 -74 218 83 8 1759 387 0 0 0 chr3 153935103 153935146 -5664637 + (CA)n Simple_repeat Simple_repeat 1 43 0 8 1759 2371 94 22 0 chr3 153936009 153936329 -5663454 + ORR1A2 LTR MaLR 1 327 0 8 1759 1423 138 53 0 chr3 153936329 153936554 -5663229 - Lx4A LINE L1 -362 6696 6460 8 1759 1904 133 9 58 chr3 153936554 153936898 -5662885 + Lx4A LINE L1 6729 7055 -3 8 1759 228 67 0 0 chr3 153937925 153937955 -5661828 + (TA)n Simple_repeat Simple_repeat 2 31 0 8 1759 214 146 0 99 chr3 153938152 153938243 -5661540 + C-rich Low_complexity Low_complexity 3 84 0 8 1759 324 0 0 0 chr3 153938279 153938315 -5661468 + (CA)n Simple_repeat Simple_repeat 2 37 0 8 1759 321 140 0 0 chr3 153940029 153940086 -5659697 + (TG)n Simple_repeat Simple_repeat 1 57 0 8 1759 2682 126 9 12 chr3 153940226 153940645 -5659138 + MTC LTR MaLR 1 418 -3 8 1759 928 113 28 14 chr3 153941007 153941145 -5658638 + B1_Mur4 SINE Alu 1 142 -8 8 1759 198 0 0 0 chr3 153941145 153941167 -5658616 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 8 1759 402 237 0 0 chr3 153941181 153941274 -5658509 + 4.5SRNA scRNA scRNA 1 93 -1 8 1759 1318 78 61 0 chr3 153943081 153943261 -5656522 - B2_Mm2 SINE B2 -4 191 1 8 1759 341 163 34 79 chr3 153943397 153943437 -5656346 - MTD LTR MaLR -2 417 338 8 1759 2038 147 73 6 chr3 153943437 153943780 -5656003 + ORR1B2 LTR MaLR 2 367 0 8 1759 515 237 316 51 chr3 153943780 153944078 -5655705 - MTD LTR MaLR -38 381 1 8 1759 607 246 16 0 chr3 153944947 153945073 -5654710 + RSINE1 SINE B4 3 130 -35 8 1759 3156 68 5 0 chr3 153945090 153945486 -5654297 + MTB LTR MaLR 1 398 -2 8 1759 205 216 0 0 chr3 153945489 153945526 -5654257 + (TA)n Simple_repeat Simple_repeat 2 38 0 8 1759 245 55 71 18 chr3 153945530 153945586 -5654197 + (TAGA)n Simple_repeat Simple_repeat 3 61 0 8 1759 388 280 9 9 chr3 153947053 153947161 -5652622 - PB1D10 SINE Alu -9 108 1 8 1759 191 360 94 47 chr3 153948652 153948865 -5650918 + L2c LINE L2 3118 3340 -47 8 1759 801 242 36 92 chr3 153948919 153949224 -5650559 + B4A SINE B4 2 289 -3 8 1759 492 238 9 0 chr3 153949684 153949789 -5649994 - B4A SINE B4 -186 106 1 8 1759 536 233 45 9 chr3 153950009 153950148 -5649635 + B1_Mur1 SINE Alu 2 149 0 8 1759 1042 260 164 3 chr3 153950768 153951092 -5648691 + MTE2a LTR MaLR 3 378 -1 8 1759 191 247 0 129 chr3 153951127 153951220 -5648563 - L2 LINE L2 -2911 508 428 8 1759 305 251 0 57 chr3 153951493 153951670 -5648113 + (TG)n Simple_repeat Simple_repeat 1 167 0 8 1759 934 318 77 3 chr3 153952060 153952398 -5647385 - MTD LTR MaLR -39 380 18 8 1759 455 109 0 0 chr3 153952621 153952685 -5647098 + B1_Mur4 SINE Alu 87 150 0 8 1759 320 111 0 16 chr3 153953212 153953276 -5646507 + (GA)n Simple_repeat Simple_repeat 1 63 0 8 1759 521 248 79 16 chr3 153953551 153953678 -5646105 - RSINE1 SINE B4 -15 150 16 8 1759 705 266 69 0 chr3 153953758 153953946 -5645837 + RMER30 DNA MER1_type 2 202 0 8 1759 232 337 0 0 chr3 153953975 153954058 -5645725 + LTR79 LTR ERVL 317 399 -128 8 1759 258 224 0 0 chr3 153954868 153954917 -5644866 + ID4 SINE ID 35 83 0 8 1759 295 259 12 36 chr3 153955202 153955286 -5644497 - ID4_ SINE ID 0 83 2 8 1759 374 304 124 45 chr3 153957248 153957513 -5642270 + B4A SINE B4 1 286 -6 8 1759 182 118 29 0 chr3 153957526 153957560 -5642223 + (CA)n Simple_repeat Simple_repeat 2 36 0 8 1759 215 286 0 16 chr3 153958106 153958170 -5641613 + ID4_ SINE ID 2 64 -19 8 1759 584 231 0 58 chr3 153958175 153958331 -5641452 - B1_Mur1 SINE Alu -1 148 2 8 1759 191 283 0 0 chr3 153959188 153959234 -5640549 - MIRb SINE MIR -16 252 207 8 1759 744 251 61 34 chr3 153959814 153960126 -5639657 - MTD LTR MaLR 0 419 40 8 1759 477 0 0 0 chr3 153960269 153960322 -5639461 + (TG)n Simple_repeat Simple_repeat 1 53 0 8 1759 183 333 74 33 chr3 153961127 153961248 -5638535 - MIR SINE MIR -21 241 116 8 1759 344 329 0 0 chr3 153961248 153961330 -5638453 + ID4 SINE ID 2 83 0 8 1759 239 282 14 14 chr3 153961331 153961403 -5638380 + GA-rich Low_complexity Low_complexity 1 72 0 8 1759 462 153 15 30 chr3 153961422 153961557 -5638226 + (CAGAGA)n Simple_repeat Simple_repeat 6 138 0 8 1759 1387 101 5 0 chr3 153961707 153961896 -5637887 + B2_Mm1t SINE B2 1 190 -3 8 1759 249 159 0 0 chr3 153963262 153963306 -5636477 + CT-rich Low_complexity Low_complexity 2 45 0 8 1759 1888 67 63 4 chr3 153963312 153963583 -5636200 - L1_Mus3 LINE L1 -5 6633 6347 8 1759 1316 238 35 80 chr3 153964081 153964456 -5635327 + ORR1E LTR MaLR 2 359 0 8 1759 676 312 47 31 chr3 153965091 153965349 -5634434 - MLT1A0 LTR MaLR 0 365 104 8 1759 699 190 0 49 chr3 153965365 153965509 -5634274 - B1_Mur3 SINE Alu -8 141 5 8 1759 22 99 0 0 chr3 153965590 153965661 -5634122 + AT_rich Low_complexity Low_complexity 1 71 0 8 1759 527 302 117 4 chr3 153965921 153966170 -5633613 + Lx8 LINE L1 6817 7093 -380 8 1759 297 247 33 120 chr3 153966203 153966387 -5633396 + Lx8 LINE L1 7300 7467 -6 8 1759 282 116 0 0 chr3 153966519 153966562 -5633221 + (TG)n Simple_repeat Simple_repeat 2 44 0 8 1759 1428 59 32 11 chr3 153966621 153966808 -5632975 - B2_Mm2 SINE B2 -4 191 1 8 1759 625 322 16 5 chr3 153966808 153966992 -5632791 - B4A SINE B4 -64 228 43 8 1759 495 315 61 6 chr3 153966995 153967158 -5632625 - ID_B1 SINE B4 -52 172 1 8 1759 273 246 14 0 chr3 153970370 153970439 -5629344 - PB1D7 SINE Alu -50 70 1 8 1759 207 175 53 0 chr3 153971002 153971059 -5628724 + T-rich Low_complexity Low_complexity 1 60 0 8 1759 698 172 66 22 chr3 153971401 153971538 -5628245 - B1F2 SINE Alu -6 143 1 8 1759 233 131 57 14 chr3 153972166 153972236 -5627547 + GA-rich Low_complexity Low_complexity 2 74 0 8 1759 759 218 0 0 chr3 153972313 153972572 -5627211 + (TA)n Simple_repeat Simple_repeat 1 259 0 8 1759 349 20 140 0 chr3 153972573 153972623 -5627160 - HAL1-3A_ME LINE L1 -846 2012 1956 8 1759 212 152 43 0 chr3 153972625 153972671 -5627112 + A-rich Low_complexity Low_complexity 3 50 0 8 1759 23 0 0 0 chr3 153972713 153972736 -5627047 + AT_rich Low_complexity Low_complexity 1 23 0 8 1759 1022 168 96 0 chr3 153972754 153972951 -5626832 + B3 SINE B2 1 216 0 8 1759 7532 132 41 16 chr3 153972972 153974198 -5625585 + Lx4A LINE L1 5783 7039 -19 8 1759 201 74 0 0 chr3 153974198 153974225 -5625558 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 8 1759 7532 132 41 16 chr3 153974225 153974241 -5625542 + Lx4A LINE L1 7040 7055 -3 8 1759 559 275 55 24 chr3 153974814 153974910 -5624873 + ID_B1 SINE B4 49 149 -75 8 1759 2348 88 35 14 chr3 153974910 153975257 -5624526 + Lx LINE L1 6292 6645 -9 8 1759 249 33 0 0 chr3 153975257 153975287 -5624496 + (TTAA)n Simple_repeat Simple_repeat 1 30 0 8 1759 559 275 55 24 chr3 153975287 153975353 -5624430 + ID_B1 SINE B4 150 215 -9 8 1759 223 191 0 67 chr3 153976042 153976087 -5623696 + ID4_ SINE ID 25 66 -17 8 1759 327 202 0 0 chr3 153976095 153976179 -5623604 + (CA)n Simple_repeat Simple_repeat 1 84 0 8 1759 720 33 0 0 chr3 153976725 153976816 -5622967 + (TC)n Simple_repeat Simple_repeat 2 92 0 8 1759 1296 169 37 98 chr3 153978545 153978873 -5620910 + RMER15 LTR ERVL 1 308 -267 8 1759 1959 144 72 70 chr3 153978956 153979359 -5620424 + RMER15 LTR ERVL 169 572 -3 8 1759 1352 98 16 0 chr3 153979403 153979586 -5620197 + B2_Mm2 SINE B2 1 186 -9 8 1759 216 0 0 0 chr3 153980224 153980248 -5619535 + (T)n Simple_repeat Simple_repeat 1 24 0 8 1759 261 0 0 0 chr3 153981347 153981376 -5618407 + (TG)n Simple_repeat Simple_repeat 2 30 0 8 1759 498 17 0 0 chr3 153981683 153981742 -5618041 + (GA)n Simple_repeat Simple_repeat 2 60 0 8 1759 725 157 0 7 chr3 153981738 153981873 -5617910 + GA-rich Low_complexity Low_complexity 2 135 0 9 1759 714 174 19 6 chr3 153981894 153982056 -5617727 + GA-rich Low_complexity Low_complexity 1 164 0 9 1759 246 62 0 0 chr3 153982652 153982684 -5617099 + (TTTG)n Simple_repeat Simple_repeat 4 35 0 9 1759 22 35 0 0 chr3 153984921 153984950 -5614833 + AT_rich Low_complexity Low_complexity 1 29 0 9 1759 252 277 68 57 chr3 153985834 153985922 -5613861 + BC1_Mm scRNA scRNA 7 95 -57 9 1759 266 286 13 13 chr3 153987287 153987365 -5612418 + B1_Mus1 SINE Alu 23 100 -48 9 1759 740 0 33 0 chr3 153988146 153988236 -5611547 + (CATATA)n Simple_repeat Simple_repeat 6 98 0 9 1759 21 0 0 0 chr3 153991256 153991277 -5608506 + GC_rich Low_complexity Low_complexity 1 21 0 9 1759 27 29 0 0 chr3 153991652 153991686 -5608097 + GC_rich Low_complexity Low_complexity 1 34 0 9 1759 180 158 0 0 chr3 153994796 153994834 -5604949 + (CTG)n Simple_repeat Simple_repeat 1 38 0 9 1759 545 0 0 15 chr3 153994909 153994975 -5604808 + (GA)n Simple_repeat Simple_repeat 2 66 0 9 1759 207 0 0 0 chr3 153997003 153997026 -5602757 + (TTTTG)n Simple_repeat Simple_repeat 4 26 0 9 1759 360 0 0 0 chr3 153997262 153997302 -5602481 + (CA)n Simple_repeat Simple_repeat 2 41 0 9 1759 239 173 65 37 chr3 153997833 153997941 -5601842 + (CCCA)n Simple_repeat Simple_repeat 1 111 0 9 1759 875 80 0 8 chr3 153999838 153999964 -5599819 + (TCC)n Simple_repeat Simple_repeat 3 127 0 9 1759 626 68 0 11 chr3 154001330 154001419 -5598364 + (TTTC)n Simple_repeat Simple_repeat 1 88 0 1 1759 194 91 30 0 chr3 154001419 154001452 -5598331 + (CCCCCT)n Simple_repeat Simple_repeat 6 39 0 2 1759 1064 72 14 7 chr3 154001476 154001616 -5598167 - B1_Mm SINE Alu -6 141 1 3 1759 198 317 83 37 chr3 154005132 154005240 -5594543 - L2c LINE L2 -24 3363 3251 4 1759 198 143 0 0 chr3 154005329 154005364 -5594419 + (CATA)n Simple_repeat Simple_repeat 2 36 0 5 1759 378 242 22 0 chr3 154005948 154006039 -5593744 - B1F2 SINE Alu 0 149 57 6 1759 243 0 0 0 chr3 154006894 154006921 -5592862 + (T)n Simple_repeat Simple_repeat 1 27 0 7 1759 2292 209 48 36 chr3 154006959 154007543 -5592240 + Lx2B LINE L1 6350 6994 -3 8 1759 308 255 10 0 chr3 154007674 154007776 -5592007 + CT-rich Low_complexity Low_complexity 2 104 0 9 1759 514 168 23 0 chr3 154007788 154007961 -5591822 + (TCTCTG)n Simple_repeat Simple_repeat 4 180 0 1 1759 419 186 10 0 chr3 154009298 154009400 -5590383 + CT-rich Low_complexity Low_complexity 1 103 0 1 1759 698 130 79 7 chr3 154009439 154009578 -5590205 + RMER15 LTR ERVL 6 154 -421 1 219 326 148 198 0 chr3 154009578 154009659 -5590124 + RMER15-int LTR ERVL 26 122 -4877 1 1760 651 216 101 7 chr3 154009767 154009916 -5589867 - B3A SINE B2 -34 164 2 1 1760 438 190 0 12 chr3 154009983 154010068 -5589715 + RMER15 LTR ERVL 3 86 -489 1 1760 334 245 159 14 chr3 154010135 154010280 -5589503 - B4A SINE B4 -21 271 106 1 1760 205 250 18 18 chr3 154010671 154010728 -5589055 + G-rich Low_complexity Low_complexity 4 60 0 1 1760 457 230 87 103 chr3 154010879 154011063 -5588720 + B3A SINE B2 18 198 0 1 1760 195 204 0 0 chr3 154011760 154011804 -5587979 + CT-rich Low_complexity Low_complexity 2 45 0 1 1760 186 43 0 0 chr3 154011816 154011839 -5587944 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1 1760 316 226 0 0 chr3 154011839 154011901 -5587882 - B1_Mur1 SINE Alu -11 138 77 1 1760 372 20 20 0 chr3 154011911 154011960 -5587823 - ORR1A1 LTR MaLR -5 341 292 2 1760 345 0 0 0 chr3 154011959 154012000 -5587783 - ORR1A1 LTR MaLR -14 332 292 2 1760 332 24 0 0 chr3 154011999 154012040 -5587743 - ORR1A1 LTR MaLR -14 332 292 2 1760 345 0 0 0 chr3 154012039 154012080 -5587703 - ORR1A1 LTR MaLR -14 332 292 2 1760 345 0 0 0 chr3 154012079 154012120 -5587663 - ORR1A1 LTR MaLR -14 332 292 2 1760 345 0 0 0 chr3 154012119 154012160 -5587623 - ORR1A1 LTR MaLR -14 332 292 2 1760 345 0 0 0 chr3 154012160 154012201 -5587582 - ORR1A1 LTR MaLR -14 332 292 2 1760 345 0 0 0 chr3 154012200 154012241 -5587542 - ORR1A1 LTR MaLR -14 332 292 2 1760 332 24 0 0 chr3 154012240 154012281 -5587502 - ORR1A1 LTR MaLR -14 332 292 2 1760 332 24 0 0 chr3 154012280 154012321 -5587462 - ORR1A1 LTR MaLR -14 332 292 2 1760 332 24 0 0 chr3 154012320 154012361 -5587422 - ORR1A1 LTR MaLR -14 332 292 2 1760 332 24 0 0 chr3 154012360 154012401 -5587382 - ORR1A1 LTR MaLR -14 332 292 2 1760 323 25 0 0 chr3 154012400 154012440 -5587343 - ORR1A1 LTR MaLR -14 332 293 2 1760 1971 46 0 15 chr3 154012440 154012706 -5587077 - ORR1A1 LTR MaLR -14 332 71 2 1760 234 209 0 43 chr3 154012722 154012792 -5586991 + G-rich Low_complexity Low_complexity 6 72 0 2 1760 239 317 107 0 chr3 154013381 154013478 -5586305 - B1F SINE Alu -5 115 1 2 1760 341 234 6 0 chr3 154013705 154013834 -5585949 + (TG)n Simple_repeat Simple_repeat 1 130 0 2 1760 513 0 0 0 chr3 154013834 154013891 -5585892 + (TC)n Simple_repeat Simple_repeat 2 58 0 2 1760 341 234 6 0 chr3 154013891 154013932 -5585851 + (TG)n Simple_repeat Simple_repeat 2 42 0 2 1760 464 255 61 50 chr3 154013954 154014152 -5585631 - B3 SINE B2 -15 201 2 2 1760 265 233 114 23 chr3 154014162 154014250 -5585533 - MER44D DNA MER2_type -609 96 1 2 1760 309 239 85 21 chr3 154014642 154014736 -5585047 - PB1D7 SINE Alu -1 119 20 2 1760 488 217 108 54 chr3 154014956 154015141 -5584642 + B2_Mm2 SINE B2 1 195 0 2 1760 7986 57 5 5 chr3 154015660 154016346 -5583437 - L1Md_F2 LINE L1 0 6582 5902 3 1760 3140 17 0 0 chr3 154016346 154016692 -5583091 - ORR1A0 LTR MaLR 0 346 1 3 1760 7986 44 4 0 chr3 154016692 154017232 -5582551 - L1Md_F2 LINE L1 -681 5901 5355 3 1760 10512 70 5 1 chr3 154017222 154018701 -5581082 - L1Md_F LINE L1 -3278 2605 1118 3 1760 858 18 0 0 chr3 154018701 154018811 -5580972 - L1Md_A LINE L1 0 6582 6473 3 1760 5417 113 48 4 chr3 154018811 154019526 -5580257 - L1Md_F LINE L1 -5499 1117 372 3 1760 479 297 114 11 chr3 154019528 154019563 -5580220 - B3 SINE B2 -6 210 166 3 1760 366 61 0 0 chr3 154019563 154019612 -5580171 + (TG)n Simple_repeat Simple_repeat 1 49 0 3 1760 479 297 114 11 chr3 154019612 154019760 -5580023 - B3 SINE B2 -51 165 9 3 1760 641 176 0 7 chr3 154019860 154019945 -5579838 + (TG)n Simple_repeat Simple_repeat 2 86 0 3 1760 378 0 0 0 chr3 154019945 154019987 -5579796 + (GA)n Simple_repeat Simple_repeat 1 42 0 3 1760 641 176 0 7 chr3 154019987 154020044 -5579739 + (TG)n Simple_repeat Simple_repeat 1 57 0 3 1760 1562 46 0 0 chr3 154020089 154020283 -5579500 - L1Md_F2 LINE L1 -12 6570 6377 3 1760 703 156 22 2 chr3 154020339 154020480 -5579303 - B1_Mur4 SINE Alu -9 139 1 4 1760 764 216 0 14 chr3 154020724 154020865 -5578918 - B1_Mus2 SINE Alu -4 143 5 4 1760 240 338 0 12 chr3 154020907 154020920 -5578863 + ID_B1 SINE B4 70 149 -75 4 1760 243 294 0 0 chr3 154020920 154020988 -5578795 + PB1D10 SINE Alu 1 68 -49 4 1760 413 268 21 28 chr3 154021059 154021201 -5578582 + B3 SINE B2 69 209 -7 4 1760 21 0 0 0 chr3 154021568 154021589 -5578194 + AT_rich Low_complexity Low_complexity 1 21 0 4 1760 213 232 77 48 chr3 154021604 154021708 -5578075 + PB1D10 SINE Alu 11 117 0 4 1760 297 0 0 0 chr3 154022184 154022217 -5577566 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 4 1760 4180 203 55 65 chr3 154022227 154023342 -5576441 + RLTR25A LTR ERVK 1 1103 0 4 1760 724 221 12 171 chr3 154023547 154023804 -5575979 - B3 SINE B2 0 216 1 4 1760 267 31 0 0 chr3 154024205 154024237 -5575546 + (T)n Simple_repeat Simple_repeat 1 32 0 5 1760 446 272 32 0 chr3 154024403 154024528 -5575255 + B1F SINE Alu 1 129 -20 5 1760 357 24 0 0 chr3 154024528 154024570 -5575213 + (TG)n Simple_repeat Simple_repeat 1 42 0 5 1760 829 163 0 0 chr3 154024584 154024719 -5575064 - B1_Mur3 SINE Alu -10 139 5 5 1760 22 0 0 0 chr3 154025206 154025228 -5574555 + AT_rich Low_complexity Low_complexity 1 22 0 5 1760 291 174 0 176 chr3 154026987 154027203 -5572580 + GA-rich Low_complexity Low_complexity 1 178 0 5 1760 433 267 81 20 chr3 154027578 154027727 -5572056 + B4 SINE B4 2 159 -133 5 1760 294 294 49 0 chr3 154028245 154028347 -5571436 + B1F2 SINE Alu 5 111 -38 5 1760 25 31 0 0 chr3 154029137 154029169 -5570614 + AT_rich Low_complexity Low_complexity 1 32 0 5 1760 543 221 122 0 chr3 154029169 154029300 -5570483 - B1_Mus1 SINE Alu -1 147 1 5 1760 588 142 28 69 chr3 154029397 154029541 -5570242 - Lx4B LINE L1 -1 7057 6920 6 1760 2661 110 50 0 chr3 154029557 154029956 -5569827 - Lx4B LINE L1 -367 6691 6273 6 1760 209 98 24 0 chr3 154030169 154030210 -5569573 + (CA)n Simple_repeat Simple_repeat 1 42 0 6 1760 648 99 0 0 chr3 154030255 154030366 -5569417 + (TC)n Simple_repeat Simple_repeat 2 112 0 6 1760 360 0 0 0 chr3 154030367 154030407 -5569376 + (CA)n Simple_repeat Simple_repeat 2 41 0 6 1760 2248 104 3 74 chr3 154031057 154031409 -5568374 + ORR1A2 LTR MaLR 1 327 0 6 1760 242 167 36 36 chr3 154031758 154031814 -5567969 + B3A SINE B2 4 59 -139 6 1760 984 159 270 30 chr3 154031800 154031953 -5567830 - RMER19B LTR ERVK -232 379 160 6 1760 2162 86 3 151 chr3 154031953 154032004 -5567779 - ORR1A2 LTR MaLR 0 327 286 6 1760 1422 94 0 10 chr3 154032004 154032198 -5567585 - B2_Mm2 SINE B2 -3 192 1 6 1760 2162 86 3 151 chr3 154032198 154032530 -5567253 - ORR1A2 LTR MaLR -42 285 1 6 1760 984 145 298 33 chr3 154032530 154032632 -5567151 - RMER19B LTR ERVK -743 159 1 6 1760 323 118 20 0 chr3 154032780 154032831 -5566952 + B1_Mus1 SINE Alu 5 56 -92 6 1760 692 130 0 0 chr3 154032865 154032973 -5566810 + B1_Mur4 SINE Alu 43 150 0 7 1760 275 272 138 0 chr3 154033053 154033176 -5566607 + MIRb SINE MIR 7 147 -121 7 1760 203 256 0 0 chr3 154033369 154033412 -5566371 + (TG)n Simple_repeat Simple_repeat 2 44 0 7 1760 463 221 21 0 chr3 154033412 154033507 -5566276 - B3A SINE B2 -100 98 2 7 1760 347 162 30 10 chr3 154033614 154033714 -5566069 + (TG)n Simple_repeat Simple_repeat 1 102 0 7 1760 2378 117 106 36 chr3 154033748 154034192 -5565591 - IAPLTR2_Mm LTR ERVK 0 475 1 7 1760 918 92 0 0 chr3 154036198 154036328 -5563455 + (TCCCC)n Simple_repeat Simple_repeat 2 131 0 7 1760 316 138 15 15 chr3 154036330 154036396 -5563387 + CT-rich Low_complexity Low_complexity 1 66 0 7 1760 641 248 126 78 chr3 154036533 154036804 -5562979 - MLT1F LTR MaLR 0 560 277 7 1760 264 59 0 0 chr3 154037043 154037077 -5562706 + (CAAA)n Simple_repeat Simple_repeat 1 34 0 7 1760 25 0 0 0 chr3 154037419 154037444 -5562339 + AT_rich Low_complexity Low_complexity 1 25 0 8 1760 7953 74 27 1 chr3 154041221 154042616 -5557167 + L1_Mus3 LINE L1 5216 6638 0 8 1760 30 27 0 0 chr3 154043203 154043240 -5556543 + AT_rich Low_complexity Low_complexity 1 37 0 8 1760 656 202 0 4 chr3 154043250 154043506 -5556277 + (TG)n Simple_repeat Simple_repeat 1 254 0 8 1760 228 135 0 0 chr3 154043829 154043866 -5555917 + (GAAAA)n Simple_repeat Simple_repeat 2 38 0 8 1760 279 0 0 0 chr3 154044781 154044812 -5554971 + (T)n Simple_repeat Simple_repeat 1 31 0 8 1760 302 333 51 56 chr3 154045096 154045293 -5554490 - B3A SINE B2 -2 196 1 8 1760 268 243 14 14 chr3 154046292 154046363 -5553420 + CT-rich Low_complexity Low_complexity 2 72 0 8 1760 220 171 0 0 chr3 154046869 154046904 -5552879 + PB1D9 SINE Alu 3 37 -83 8 1760 427 270 112 35 chr3 154046954 154047123 -5552660 + B3A SINE B2 1 182 -16 8 1760 267 224 0 0 chr3 154047123 154047199 -5552584 + (CA)n Simple_repeat Simple_repeat 1 76 0 9 1760 709 209 0 0 chr3 154047230 154047364 -5552419 - B3A SINE B2 -64 134 1 9 1760 372 88 0 0 chr3 154047540 154047597 -5552186 + (TG)n Simple_repeat Simple_repeat 1 57 0 9 1760 546 16 0 0 chr3 154047597 154047659 -5552124 + (GA)n Simple_repeat Simple_repeat 1 63 0 9 1760 351 333 61 27 chr3 154048009 154048157 -5551626 - ID_B1 SINE B4 -22 202 50 9 1760 360 0 0 0 chr3 154049471 154049511 -5550272 + (TG)n Simple_repeat Simple_repeat 1 40 0 9 1760 611 226 7 62 chr3 154049523 154049669 -5550114 - RSINE1 SINE B4 -22 143 6 9 1760 364 193 61 52 chr3 154051263 154051378 -5548405 - B1F SINE Alu -1 148 33 9 1760 518 239 15 7 chr3 154051275 154051410 -5548373 - ID_B1 SINE B4 -8 216 81 9 1760 273 57 0 0 chr3 154051626 154051661 -5548122 + (TG)n Simple_repeat Simple_repeat 1 35 0 9 1760 253 98 32 32 chr3 154051661 154051724 -5548059 + (CAGAGA)n Simple_repeat Simple_repeat 4 66 0 1 1760 619 326 50 11 chr3 154051766 154051897 -5547886 - L1MA4 LINE L1 -373 5927 5795 1 1760 402 21 0 0 chr3 154051897 154051944 -5547839 + (CA)n Simple_repeat Simple_repeat 1 47 0 1 1760 619 326 50 11 chr3 154051944 154052091 -5547692 - L1MA4 LINE L1 -506 5794 5638 1 1760 453 19 0 0 chr3 154053202 154053256 -5546527 + (TG)n Simple_repeat Simple_repeat 2 55 0 1 1760 741 194 0 0 chr3 154053454 154053634 -5546149 + CT-rich Low_complexity Low_complexity 1 180 0 1 1760 369 86 0 0 chr3 154053635 154053693 -5546090 + (CAAAA)n Simple_repeat Simple_repeat 2 59 0 1 1760 491 242 146 39 chr3 154053949 154054155 -5545628 + B4 SINE B4 2 229 -63 1 1760 378 0 0 0 chr3 154054184 154054226 -5545557 + (CA)n Simple_repeat Simple_repeat 1 42 0 1 1760 219 219 15 30 chr3 154054229 154054295 -5545488 + RSINE1 SINE B4 4 68 -97 1 1760 230 288 11 91 chr3 154054452 154054519 -5545264 + RSINE1 SINE B4 85 146 -19 1 1760 219 125 0 0 chr3 154054519 154054559 -5545224 + (CA)n Simple_repeat Simple_repeat 1 40 0 1 1760 230 288 11 91 chr3 154054559 154054579 -5545204 + RSINE1 SINE B4 147 165 0 1 1760 534 122 0 0 chr3 154054603 154054701 -5545082 + (CA)n Simple_repeat Simple_repeat 2 99 0 1 1760 216 0 0 0 chr3 154055564 154055588 -5544195 + (T)n Simple_repeat Simple_repeat 1 24 0 1 1760 1279 152 267 24 chr3 154055750 154055941 -5543842 - RMER17C LTR ERVK 0 410 157 1 1760 855 61 0 0 chr3 154055941 154056055 -5543728 + (GA)n Simple_repeat Simple_repeat 2 115 0 1 1760 1279 152 267 24 chr3 154056055 154056193 -5543590 - RMER17C LTR ERVK -254 156 1 1 1760 644 173 21 21 chr3 154056243 154056385 -5543398 - B4A SINE B4 -149 143 2 1 1760 227 326 40 10 chr3 154056424 154056523 -5543260 - LTR37A LTR ERV1 -324 102 1 1 1760 450 253 263 6 chr3 154056839 154057014 -5542769 - ID_B1 SINE B4 -4 220 1 1 1760 283 250 36 114 chr3 154057151 154057250 -5542533 + B3A SINE B2 70 172 -26 1 1760 663 48 0 0 chr3 154057250 154057333 -5542450 + (TC)n Simple_repeat Simple_repeat 1 83 0 1 1760 283 250 36 114 chr3 154057333 154057373 -5542410 + B3A SINE B2 173 198 0 1 1760 1818 138 98 37 chr3 154057508 154057914 -5541869 - Lx5 LINE L1 -839 6211 5781 1 1760 4679 174 34 1 chr3 154057915 154058722 -5541061 + Lx5 LINE L1 6216 7048 -2 1 1760 399 200 0 0 chr3 154058784 154058854 -5540929 - B3 SINE B2 -108 108 39 1 1760 512 15 15 0 chr3 154059008 154059073 -5540710 + (GA)n Simple_repeat Simple_repeat 1 66 0 1 1760 2431 135 89 18 chr3 154059681 154060074 -5539709 + MTC LTR MaLR 1 421 0 1 1760 493 239 37 7 chr3 154060805 154060940 -5538843 + MLT2F LTR ERVL 1 139 -524 1 1760 300 175 18 0 chr3 154061022 154061079 -5538704 - HAL1-3A_ME LINE L1 -825 2033 1976 1 1760 488 158 11 0 chr3 154061079 154061174 -5538609 + (TG)n Simple_repeat Simple_repeat 2 97 0 1 1760 319 350 17 75 chr3 154061203 154061376 -5538407 - B4A SINE B4 -6 286 124 1 1760 1072 200 19 14 chr3 154061425 154061638 -5538145 - B3 SINE B2 -1 215 2 1 1760 794 272 119 24 chr3 154061664 154062075 -5537708 - L1MC2 LINE L1 -212 6132 5683 1 1760 335 290 109 16 chr3 154062389 154062645 -5537138 - L1MC2 LINE L1 -1445 4701 4422 1 1760 270 281 0 19 chr3 154062732 154062888 -5536895 + (TG)n Simple_repeat Simple_repeat 2 154 0 1 1760 409 218 248 8 chr3 154062891 154063016 -5536767 - RSINE1 SINE B4 0 165 11 1 1760 24 0 0 0 chr3 154063277 154063301 -5536482 + AT_rich Low_complexity Low_complexity 1 24 0 1 1760 300 53 0 0 chr3 154063385 154063423 -5536360 + (TTA)n Simple_repeat Simple_repeat 2 39 0 1 1760 298 270 80 7 chr3 154063433 154063571 -5536212 + MLT1H-int LTR MaLR 384 531 -878 1 1760 284 127 18 0 chr3 154064174 154064229 -5535554 + (TAGA)n Simple_repeat Simple_repeat 2 57 0 1 1760 504 0 0 0 chr3 154064239 154064295 -5535488 + (GA)n Simple_repeat Simple_repeat 1 56 0 1 1760 699 325 35 21 chr3 154065954 154066240 -5533543 + B4A SINE B4 2 291 -1 1 1760 206 298 23 35 chr3 154066249 154066336 -5533447 + (CATATA)n Simple_repeat Simple_repeat 5 90 0 1 1760 9814 112 17 5 chr3 154066336 154068644 -5531139 + L1_Mus4 LINE L1 4301 6636 0 1 1760 228 299 101 25 chr3 154068764 154068911 -5530872 - MIRm SINE MIR -96 166 8 1 1760 324 70 0 0 chr3 154069141 154069184 -5530599 + (TA)n Simple_repeat Simple_repeat 2 44 0 1 1760 180 0 0 0 chr3 154069184 154069203 -5530580 + (TG)n Simple_repeat Simple_repeat 1 20 0 1 1760 486 0 0 0 chr3 154069203 154069256 -5530527 + (GA)n Simple_repeat Simple_repeat 1 54 0 1 1760 206 179 0 0 chr3 154069701 154069740 -5530043 - MIRc SINE MIR -132 136 98 1 1760 429 239 70 7 chr3 154070958 154071101 -5528682 - L1MA9 LINE L1 -134 6178 6027 1 1760 1623 267 68 17 chr3 154071148 154071732 -5528051 - L1M4c LINE L1 -889 6214 5601 1 1760 329 224 15 0 chr3 154071766 154071833 -5527950 - ID4 SINE ID -14 69 2 1 1760 724 326 37 11 chr3 154071924 154072315 -5527468 - L1M4c LINE L1 -4620 2488 2142 1 1760 237 261 54 84 chr3 154072492 154072789 -5526994 - L1M4c LINE L1 -4095 2011 1724 1 1760 237 217 87 0 chr3 154073231 154073300 -5526483 + MTEa LTR MaLR 293 367 -12 1 1760 323 339 82 16 chr3 154074359 154074542 -5525241 - L1M4c LINE L1 -6795 235 41 1 1760 535 134 25 25 chr3 154074652 154074774 -5525009 - Lx9 LINE L1 -5 7639 7518 1 1760 237 65 0 0 chr3 154074782 154074813 -5524970 + (TA)n Simple_repeat Simple_repeat 2 32 0 1 1760 862 166 14 0 chr3 154074821 154074966 -5524817 - Lx9 LINE L1 -201 7443 7297 1 1760 3103 157 42 50 chr3 154075070 154075714 -5524069 + RLTR26 LTR ERVK 1 639 -3 1 1760 801 264 315 11 chr3 154075714 154076346 -5523437 - L1M4 LINE L1 -2577 4067 3244 1 1760 241 247 20 51 chr3 154076436 154076534 -5523249 - L1M4 LINE L1 -5471 1071 977 1 1760 3064 65 5 0 chr3 154076576 154076961 -5522822 - L1_Mus1 LINE L1 0 6567 6181 1 1760 1453 52 0 0 chr3 154076961 154077133 -5522650 + L1_Mus1 LINE L1 6016 6187 -380 1 1760 24 0 0 0 chr3 154077239 154077263 -5522520 + AT_rich Low_complexity Low_complexity 1 24 0 1 1760 270 253 93 62 chr3 154077487 154077584 -5522199 - MTEa LTR MaLR -15 364 265 1 1760 352 328 0 0 chr3 154077782 154077959 -5521824 + GA-rich Low_complexity Low_complexity 3 179 0 1 1760 202 362 0 0 chr3 154078232 154078409 -5521374 + GA-rich Low_complexity Low_complexity 3 179 0 1 1760 398 331 15 0 chr3 154079356 154079486 -5520297 - MTEa LTR MaLR -162 217 86 1 1760 606 71 0 0 chr3 154079496 154079580 -5520203 + (CA)n Simple_repeat Simple_repeat 1 84 0 1 1760 436 219 0 0 chr3 154079622 154079727 -5520056 + CT-rich Low_complexity Low_complexity 46 150 0 1 1760 260 316 20 10 chr3 154079865 154079964 -5519819 - MIR SINE MIR -78 184 85 1 1760 1012 213 10 10 chr3 154080365 154080564 -5519219 + B3 SINE B2 1 199 -17 1 1760 872 127 15 0 chr3 154080608 154080742 -5519041 - B1_Mur3 SINE Alu 0 149 14 1 1760 21 0 0 0 chr3 154080811 154080832 -5518951 + AT_rich Low_complexity Low_complexity 1 21 0 1 1760 351 0 0 0 chr3 154081811 154081850 -5517933 + (TG)n Simple_repeat Simple_repeat 1 39 0 1 1760 311 86 16 65 chr3 154082326 154082388 -5517395 + B1_Mus1 SINE Alu 2 60 -88 1 1760 294 0 0 160 chr3 154082389 154082539 -5517244 + (CAGAG)n Simple_repeat Simple_repeat 5 130 0 1 1760 692 77 10 0 chr3 154082542 154082646 -5517137 + B1_Mus2 SINE Alu 42 146 -1 1 1760 276 53 0 0 chr3 154082663 154082701 -5517082 + (CAAAAA)n Simple_repeat Simple_repeat 3 40 0 1 1760 306 0 0 0 chr3 154083425 154083459 -5516324 + (TG)n Simple_repeat Simple_repeat 1 34 0 1 1760 330 91 0 0 chr3 154083459 154083514 -5516269 + (GA)n Simple_repeat Simple_repeat 2 56 0 1 1760 225 0 0 0 chr3 154083937 154083962 -5515821 + (TG)n Simple_repeat Simple_repeat 1 25 0 1 1760 631 299 7 0 chr3 154084023 154084170 -5515613 + RSINE1 SINE B4 3 150 -15 1 1760 207 225 0 0 chr3 154084174 154084214 -5515569 + (TAAA)n Simple_repeat Simple_repeat 1 40 0 1 1760 1193 61 7 0 chr3 154084320 154084467 -5515316 - B1_Mus1 SINE Alu 0 148 1 1 1760 378 228 0 29 chr3 154084473 154084585 -5515198 - ORR1E LTR MaLR -253 106 4 1 1760 192 152 0 0 chr3 154088009 154088042 -5511741 + (TTTA)n Simple_repeat Simple_repeat 3 35 0 1 1760 366 165 0 0 chr3 154088046 154088125 -5511658 + (CA)n Simple_repeat Simple_repeat 2 80 0 1 1760 523 258 8 0 chr3 154088138 154088262 -5511521 - RSINE1 SINE B4 -40 125 1 1 1760 456 344 13 35 chr3 154088840 154088984 -5510799 + B4A SINE B4 69 206 -86 1 1760 911 222 34 10 chr3 154088984 154089193 -5510590 + B3 SINE B2 3 216 0 1 1760 456 344 13 35 chr3 154089193 154089277 -5510506 + B4A SINE B4 207 292 0 1 1760 263 164 0 16 chr3 154089277 154089339 -5510444 + (CATA)n Simple_repeat Simple_repeat 3 63 0 1 1760 428 35 0 17 chr3 154089795 154089854 -5509929 + (TG)n Simple_repeat Simple_repeat 2 59 0 1 1760 513 250 0 30 chr3 154089880 154090012 -5509771 - RSINE1 SINE B4 -35 130 3 1 1760 917 50 0 8 chr3 154091062 154091183 -5508600 + L1_Mus4 LINE L1 5959 6078 -558 1 1760 411 272 305 39 chr3 154091283 154091486 -5508297 - ORR1E LTR MaLR -4 355 99 1 1760 500 276 22 0 chr3 154091501 154091635 -5508148 - ORR1E LTR MaLR -222 137 1 1 1760 298 307 58 19 chr3 154092106 154092262 -5507521 - MLT1B LTR MaLR -16 374 213 1 1760 267 127 31 16 chr3 154092264 154092328 -5507455 + CT-rich Low_complexity Low_complexity 1 65 0 1 1760 307 286 0 0 chr3 154092723 154092800 -5506983 + ID4 SINE ID 6 82 -1 1 1760 240 35 0 0 chr3 154093331 154093360 -5506423 + (CA)n Simple_repeat Simple_repeat 1 29 0 1 1760 225 128 0 0 chr3 154093513 154093560 -5506223 + (A)n Simple_repeat Simple_repeat 1 47 0 1 1760 306 0 0 0 chr3 154093687 154093721 -5506062 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 1 1760 1107 217 71 0 chr3 154095783 154096023 -5503760 - Lx5 LINE L1 -2 7048 6792 1 1760 3264 60 2 0 chr3 154096323 154096722 -5503061 + MTB LTR MaLR 1 400 0 1 1760 215 305 57 41 chr3 154097019 154097142 -5502641 - L2a LINE L2 -8 3418 3294 1 1760 1427 243 55 8 chr3 154097490 154097872 -5501911 - MTD LTR MaLR -15 404 5 1 1760 340 272 38 70 chr3 154098399 154098506 -5501277 + RSINE1 SINE B4 11 107 -58 1 1760 3245 50 7 10 chr3 154098506 154098914 -5500869 - MTB_Mm LTR MaLR 0 407 1 1 1760 340 272 38 70 chr3 154098914 154098964 -5500819 + RSINE1 SINE B4 108 162 -3 1 1760 23 0 0 0 chr3 154098997 154099020 -5500763 + AT_rich Low_complexity Low_complexity 1 23 0 1 1760 718 213 35 12 chr3 154099489 154099660 -5500123 - B2_Mm2 SINE B2 -14 181 7 1 1760 274 320 188 7 chr3 154099660 154099814 -5499969 - B3A SINE B2 -7 209 28 1 1760 216 0 0 0 chr3 154101058 154101082 -5498701 + (GA)n Simple_repeat Simple_repeat 2 25 0 2 1760 189 0 0 0 chr3 154101082 154101102 -5498681 + (TG)n Simple_repeat Simple_repeat 1 21 0 2 1760 280 322 53 11 chr3 154101105 154101199 -5498584 - B3A SINE B2 -31 167 70 2 1760 317 410 17 6 chr3 154101998 154102172 -5497611 - MER91A DNA Tip100 -15 181 6 2 1760 631 196 14 14 chr3 154102450 154102590 -5497193 + MTD LTR MaLR 42 181 -238 2 1760 698 216 30 6 chr3 154102604 154102772 -5497011 - Lx6 LINE L1 -447 7013 6842 2 1760 338 258 103 63 chr3 154102762 154102828 -5496955 - Lx6 LINE L1 -420 6630 6562 2 1760 234 0 0 0 chr3 154102828 154102854 -5496929 + (GA)n Simple_repeat Simple_repeat 1 26 0 2 1760 1052 153 46 26 chr3 154102854 154103029 -5496754 - Lx6 LINE L1 -583 6877 6696 2 1760 865 214 12 0 chr3 154103028 154103196 -5496587 + Lx6 LINE L1 6510 6679 -781 2 1760 874 289 14 28 chr3 154104851 154105136 -5494647 - B4 SINE B4 -10 282 2 2 1760 200 106 0 70 chr3 154105400 154105471 -5494312 + A-rich Low_complexity Low_complexity 3 68 0 2 1760 24 77 0 0 chr3 154105583 154105635 -5494148 + AT_rich Low_complexity Low_complexity 1 52 0 2 1760 234 91 0 0 chr3 154105893 154105926 -5493857 + (TAA)n Simple_repeat Simple_repeat 2 34 0 2 1760 407 298 28 7 chr3 154106012 154106154 -5493629 - B1F SINE Alu 0 149 5 2 1760 1164 260 29 29 chr3 154106392 154106740 -5493043 + MER121 Unknown Unknown 5 352 -60 2 1760 217 300 149 43 chr3 154107388 154107670 -5492113 + L2a LINE L2 3108 3419 -7 2 1760 215 356 55 12 chr3 154107768 154107933 -5491850 + MIR SINE MIR 77 248 -14 2 1760 301 293 179 28 chr3 154108239 154108418 -5491365 - MLT1A0 LTR MaLR -36 329 124 2 1760 252 0 0 0 chr3 154108793 154108821 -5490962 + (T)n Simple_repeat Simple_repeat 1 28 0 2 1760 8689 78 50 7 chr3 154109448 154110582 -5489201 + L1VL2 LINE L1 236 1412 -2203 2 1760 330 26 0 0 chr3 154110582 154110621 -5489162 + (TA)n Simple_repeat Simple_repeat 2 40 0 2 1760 8689 72 45 15 chr3 154110621 154111225 -5488558 + L1VL2 LINE L1 1413 2057 -1558 2 1760 6714 108 72 42 chr3 154111225 154112307 -5487476 + RLTR13D3 LTR ERVK 1 1114 0 2 1760 4856 80 22 25 chr3 154112307 154112482 -5487301 + L1VL2 LINE L1 2059 2230 -1385 2 1760 3905 198 56 139 chr3 154112523 154113632 -5486151 - RMER1B Other Other -3 1063 47 2 1760 252 200 0 16 chr3 154113762 154113823 -5485960 - RMER15 LTR ERVL -113 462 403 2 1760 222 297 70 35 chr3 154114858 154115001 -5484782 + MIRb SINE MIR 53 200 -68 2 1760 228 216 0 0 chr3 154116264 154116315 -5483468 + GA-rich Low_complexity Low_complexity 3 53 0 2 1760 1024 124 11 0 chr3 154116316 154116494 -5483289 + (GGA)n Simple_repeat Simple_repeat 1 180 0 2 1760 267 333 16 31 chr3 154117007 154117134 -5482649 + C-rich Low_complexity Low_complexity 1 125 0 2 1760 318 304 112 32 chr3 154117288 154117475 -5482308 - L1M5 LINE L1 -3641 2505 2304 2 1760 185 0 40 0 chr3 154117574 154117599 -5482184 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 2 1760 1366 139 76 15 chr3 154117863 154118126 -5481657 + MTC LTR MaLR 1 279 -142 2 1760 276 111 0 0 chr3 154118126 154118171 -5481612 + MTC LTR MaLR 235 279 -142 2 1760 267 140 0 0 chr3 154118166 154118216 -5481567 + MTC LTR MaLR 230 279 -142 2 1760 571 236 25 101 chr3 154118211 154118409 -5481374 + MTC LTR MaLR 230 412 -9 2 1760 22 0 0 0 chr3 154118776 154118798 -5480985 + AT_rich Low_complexity Low_complexity 1 22 0 2 1760 379 329 81 17 chr3 154118825 154119171 -5480612 - L1M2c LINE L1 -4320 2529 2162 2 1760 318 194 0 0 chr3 154119173 154119240 -5480543 + (TTA)n Simple_repeat Simple_repeat 1 67 0 2 1760 483 178 0 0 chr3 154119721 154119822 -5479961 + (TG)n Simple_repeat Simple_repeat 2 102 0 2 1760 286 297 72 52 chr3 154120199 154120448 -5479335 - L1M2c LINE L1 -4532 2317 2064 2 1760 755 325 10 0 chr3 154120541 154120744 -5479039 - ID_B1 SINE B4 -12 212 8 2 1760 422 265 78 48 chr3 154120753 154120869 -5478914 - L1M2c LINE L1 -4820 2029 1916 2 1760 216 67 0 0 chr3 154120869 154120899 -5478884 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 2 1760 422 265 78 48 chr3 154120899 154121091 -5478692 - L1M2c LINE L1 -4934 1915 1713 2 1760 180 0 0 0 chr3 154121171 154121191 -5478592 + (T)n Simple_repeat Simple_repeat 1 20 0 2 1760 1040 196 44 119 chr3 154121191 154121509 -5478274 + MTD LTR MaLR 13 306 -113 2 1760 760 205 23 12 chr3 154121512 154121685 -5478098 - B3 SINE B2 -15 201 27 2 1760 1706 102 0 20 chr3 154121686 154121937 -5477846 - L1Md_F2 LINE L1 -12 6570 6325 2 1760 2378 40 0 0 chr3 154121937 154122212 -5477571 + L1Md_F2 LINE L1 6048 6322 -260 2 1760 223 191 0 0 chr3 154122212 154122254 -5477529 - B3 SINE B2 -173 43 2 2 1760 548 103 53 53 chr3 154122633 154122766 -5477017 + Lx9 LINE L1 7511 7643 -1 2 1760 229 298 0 0 chr3 154123048 154123105 -5476678 + (TATATG)n Simple_repeat Simple_repeat 3 59 0 2 1760 420 259 116 75 chr3 154123132 154123399 -5476384 - B4 SINE B4 -12 280 3 2 1760 696 56 0 0 chr3 154126179 154126268 -5473515 + (GGGA)n Simple_repeat Simple_repeat 3 91 0 2 1760 258 361 30 0 chr3 154126309 154126442 -5473341 + MIRb SINE MIR 68 204 -64 2 1760 672 143 0 0 chr3 154126442 154126554 -5473229 + (CA)n Simple_repeat Simple_repeat 1 112 0 2 1760 637 255 98 35 chr3 154128386 154128589 -5471194 - B3 SINE B2 0 216 1 2 1760 974 172 84 20 chr3 154128665 154128867 -5470916 - B3 SINE B2 -1 215 1 2 1760 180 0 0 0 chr3 154131837 154131857 -5467926 + (T)n Simple_repeat Simple_repeat 1 20 0 2 1760 341 260 26 0 chr3 154132842 154132919 -5466864 - RSINE1 SINE B4 -85 80 2 2 1760 338 304 189 19 chr3 154133667 154133801 -5465982 + MTE-int LTR MaLR 557 692 -888 2 1760 279 0 0 0 chr3 154133801 154133832 -5465951 + (GA)n Simple_repeat Simple_repeat 1 31 0 2 1760 338 304 189 19 chr3 154133832 154134015 -5465768 + MTE-int LTR MaLR 693 927 -653 2 1760 574 279 166 74 chr3 154134033 154134370 -5465413 - MTE2b LTR MaLR 0 379 12 2 1760 848 266 246 24 chr3 154134379 154134830 -5464953 + MTE-int LTR MaLR 941 1491 -89 2 1760 696 266 41 33 chr3 154134942 154135230 -5464553 + Lx7 LINE L1 5599 5928 -363 2 1760 549 0 0 0 chr3 154135271 154135332 -5464451 + (GA)n Simple_repeat Simple_repeat 1 61 0 2 1760 384 132 29 86 chr3 154135750 154135924 -5463859 + (CTGTG)n Simple_repeat Simple_repeat 4 167 0 2 1760 388 163 29 86 chr3 154136006 154136340 -5463443 + (CTGTG)n Simple_repeat Simple_repeat 1 314 0 2 1760 393 138 29 86 chr3 154136358 154136532 -5463251 + (CTGTG)n Simple_repeat Simple_repeat 4 167 0 2 1760 411 151 29 86 chr3 154136614 154136788 -5462995 + (CTGTG)n Simple_repeat Simple_repeat 4 167 0 2 1760 381 170 29 86 chr3 154136806 154136980 -5462803 + (CTGTG)n Simple_repeat Simple_repeat 4 167 0 2 1760 211 199 30 90 chr3 154136998 154137164 -5462619 + (CTGTG)n Simple_repeat Simple_repeat 2 157 0 2 1760 234 207 17 0 chr3 154138081 154138139 -5461644 + ID2 SINE ID 24 82 -1 2 1760 375 23 0 0 chr3 154139454 154139498 -5460285 + (CA)n Simple_repeat Simple_repeat 2 45 0 2 1760 453 208 29 10 chr3 154139927 154140029 -5459754 - PB1D10 SINE Alu -8 109 6 2 1760 183 80 0 0 chr3 154140055 154140080 -5459703 + (TGAA)n Simple_repeat Simple_repeat 1 25 0 2 1760 22 0 0 0 chr3 154140213 154140235 -5459548 + AT_rich Low_complexity Low_complexity 1 22 0 2 1760 498 157 0 0 chr3 154140335 154140437 -5459346 + (TG)n Simple_repeat Simple_repeat 1 102 0 2 27 1429 181 23 46 chr3 154140437 154140776 -5459007 - RMER17A LTR ERVK 0 751 419 2 1761 611 26 13 0 chr3 154140776 154140853 -5458930 + (GA)n Simple_repeat Simple_repeat 2 79 0 2 1761 1611 86 16 5 chr3 154140853 154141110 -5458673 - RMER17A LTR ERVK -333 418 61 2 1761 417 16 0 46 chr3 154141409 154141474 -5458309 + (TG)n Simple_repeat Simple_repeat 1 62 0 2 1761 332 340 20 33 chr3 154141477 154141629 -5458154 - RSINE1 SINE B4 -13 152 3 2 1761 203 167 0 0 chr3 154141727 154141769 -5458014 + A-rich Low_complexity Low_complexity 4 45 0 2 1761 207 216 19 19 chr3 154142029 154142081 -5457702 + CT-rich Low_complexity Low_complexity 2 53 0 2 1761 197 269 18 71 chr3 154142664 154142776 -5457007 + L3 LINE CR1 915 1020 -3469 2 1761 811 235 121 19 chr3 154142895 154143160 -5456623 + B4 SINE B4 1 292 0 2 1761 582 140 0 0 chr3 154143164 154143264 -5456519 + (CA)n Simple_repeat Simple_repeat 1 100 0 2 1761 500 270 212 45 chr3 154143308 154143875 -5455908 - L1MC LINE L1 -1239 4907 4263 2 1761 549 241 105 84 chr3 154143951 154144136 -5455647 - Lx8 LINE L1 -29 7444 7244 2 1761 234 0 0 0 chr3 154144136 154144162 -5455621 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 2 1761 549 241 105 84 chr3 154144162 154144262 -5455521 - Lx8 LINE L1 -230 7243 7153 2 1761 307 295 31 40 chr3 154144271 154144441 -5455342 - L1MC LINE L1 -1930 4216 4045 2 1761 241 274 96 19 chr3 154144535 154144639 -5455144 - L1MC LINE L1 -2175 3971 3860 2 1761 227 222 189 0 chr3 154144877 154144967 -5454816 - L1MC LINE L1 -2399 3747 3641 2 1761 21 0 0 0 chr3 154145002 154145023 -5454760 + AT_rich Low_complexity Low_complexity 1 21 0 2 1761 441 131 0 0 chr3 154147114 154147198 -5452585 + (TC)n Simple_repeat Simple_repeat 1 84 0 2 1761 276 40 60 0 chr3 154147198 154147248 -5452535 + (CA)n Simple_repeat Simple_repeat 1 53 0 2 1761 183 404 47 16 chr3 154150097 154150288 -5449495 + MIR SINE MIR 62 258 -4 2 1761 843 259 70 60 chr3 154150467 154150865 -5448918 - L1_Rod LINE L1 -334 5513 5112 2 1761 38 0 0 0 chr3 154151012 154151050 -5448733 + AT_rich Low_complexity Low_complexity 1 38 0 2 1761 715 322 29 8 chr3 154151076 154151320 -5448463 + Lx8 LINE L1 6802 7050 -423 2 1761 2326 170 39 2 chr3 154151435 154151841 -5447942 + MTC LTR MaLR 1 421 0 2 1761 27 49 0 0 chr3 154152012 154152053 -5447730 + AT_rich Low_complexity Low_complexity 1 41 0 2 1761 21 57 0 0 chr3 154152084 154152119 -5447664 + AT_rich Low_complexity Low_complexity 1 35 0 2 1761 246 275 43 144 chr3 154152372 154152580 -5447203 - L1M5 LINE L1 -1461 4685 4499 2 1761 180 0 0 0 chr3 154152704 154152724 -5447059 + (T)n Simple_repeat Simple_repeat 1 20 0 2 1761 2676 155 39 52 chr3 154152975 154153067 -5446716 + RLTR31_Mur LTR ERVK 3 96 -457 2 1761 243 0 0 0 chr3 154153067 154153094 -5446689 + (GA)n Simple_repeat Simple_repeat 2 28 0 2 1761 2676 155 39 52 chr3 154153094 154153559 -5446224 + RLTR31_Mur LTR ERVK 97 552 -1 2 1761 875 279 31 81 chr3 154153608 154153967 -5445816 - MTE2b LTR MaLR 0 379 39 2 1761 809 219 31 41 chr3 154154248 154154443 -5445340 - B3A SINE B2 -5 193 1 2 1761 207 69 0 0 chr3 154154608 154154637 -5445146 + (TCTG)n Simple_repeat Simple_repeat 1 29 0 2 1761 4160 105 93 0 chr3 154155615 154156273 -5443510 - RMER19A LTR ERVK 0 737 19 2 1761 297 325 68 72 chr3 154156292 154156613 -5443170 - LTR37B LTR ERV1 -138 330 11 2 1761 185 0 40 0 chr3 154156960 154156985 -5442798 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 2 1761 286 318 104 71 chr3 154157347 154157450 -5442333 + MTEa LTR MaLR 20 129 -290 2 1761 887 235 15 0 chr3 154157450 154157654 -5442129 - B3 SINE B2 -7 209 3 2 1761 451 302 112 41 chr3 154157654 154157919 -5441864 + MTEa LTR MaLR 75 397 -22 2 1761 41695 13 2 6 chr3 154159555 154165964 -5433819 - L1Md_A LINE L1 0 6582 201 2 1761 190 353 15 0 chr3 154165993 154166061 -5433722 - L2b LINE L2 -77 3298 3230 2 1761 4150 189 99 9 chr3 154166246 154167094 -5432689 + Lx7 LINE L1 6381 7304 -392 2 1761 413 262 50 6 chr3 154167100 154167261 -5432522 + (CACAA)n Simple_repeat Simple_repeat 3 170 0 3 1761 769 259 68 35 chr3 154167287 154167425 -5432358 + Lx7 LINE L1 7287 7417 -279 2 1761 615 12 12 23 chr3 154167425 154167511 -5432272 + (TCTCC)n Simple_repeat Simple_repeat 2 86 0 3 1761 769 259 68 35 chr3 154167511 154167769 -5432014 + Lx7 LINE L1 7418 7695 -1 2 1761 612 0 0 0 chr3 154167977 154168045 -5431738 + (GA)n Simple_repeat Simple_repeat 1 68 0 3 1761 416 254 50 8 chr3 154168330 154168449 -5431334 + ID_B1 SINE B4 92 215 -9 3 1761 344 59 0 19 chr3 154169015 154169067 -5430716 + (TG)n Simple_repeat Simple_repeat 1 51 0 3 1761 342 0 0 0 chr3 154169146 154169184 -5430599 + (TG)n Simple_repeat Simple_repeat 2 39 0 3 1761 574 337 35 5 chr3 154172046 154172243 -5427540 - MER58A DNA MER1_type -1 223 21 3 1761 245 319 95 10 chr3 154173448 154173585 -5426198 - MIRc SINE MIR -86 176 34 3 1761 1093 95 0 0 chr3 154175343 154175490 -5424293 - B1_Mm SINE Alu 0 147 1 3 1761 293 202 117 70 chr3 154175913 154176041 -5423742 + MIRc SINE MIR 7 140 -128 3 1761 847 121 53 0 chr3 154176114 154176246 -5423537 - B1_Mur4 SINE Alu -8 142 4 3 1761 325 303 18 0 chr3 154176979 154177088 -5422695 - RMER30 DNA MER1_type -1 201 91 3 1761 256 321 107 0 chr3 154177422 154177534 -5422249 + MER58A DNA MER1_type 41 164 -60 3 1761 302 351 75 17 chr3 154177677 154177851 -5421932 + L1MEc LINE L1 65 248 -6152 3 1761 537 298 135 16 chr3 154177891 154178715 -5421068 + L1MEc LINE L1 2651 3581 -2738 3 1761 665 289 67 42 chr3 154179406 154179691 -5420092 + B4 SINE B4 1 292 0 3 1761 494 335 12 37 chr3 154181055 154181219 -5418564 + RSINE1 SINE B4 6 165 0 3 1761 228 67 0 0 chr3 154181232 154181262 -5418521 + (TAGA)n Simple_repeat Simple_repeat 4 33 0 3 1761 378 340 16 15 chr3 154181404 154181596 -5418187 + B4A SINE B4 90 290 -2 3 1761 187 358 84 39 chr3 154181915 154182069 -5417714 - L2b LINE L2 -1 3374 3214 3 1761 382 375 12 24 chr3 154182237 154182401 -5417382 + Tigger5 DNA MER2_type 39 200 -2206 3 1761 568 195 11 16 chr3 154182618 154183069 -5416714 + (CA)n Simple_repeat Simple_repeat 1 448 0 3 1761 303 299 10 0 chr3 154183112 154183209 -5416574 + (CA)n Simple_repeat Simple_repeat 1 98 0 3 1761 460 219 12 0 chr3 154183223 154183392 -5416391 + (CA)n Simple_repeat Simple_repeat 1 171 0 3 1761 903 263 77 138 chr3 154183720 154184049 -5415734 - Lx8 LINE L1 -2 7471 7136 3 1761 1865 185 128 68 chr3 154184049 154184547 -5415236 + RLTR12B LTR ERVK 1 528 0 3 1761 903 263 77 138 chr3 154184547 154184725 -5415058 - Lx8 LINE L1 -338 7135 6995 3 1761 279 280 75 11 chr3 154184727 154184821 -5414962 + L1M2 LINE L1 4859 4958 -1185 3 1761 674 240 173 0 chr3 154184876 154185055 -5414728 - B3 SINE B2 -6 210 1 3 1761 981 165 11 11 chr3 154187773 154188121 -5411662 + CT-rich Low_complexity Low_complexity 1 348 0 3 1761 21 0 0 0 chr3 154188755 154188776 -5411007 + AT_rich Low_complexity Low_complexity 1 21 0 3 1761 271 282 16 49 chr3 154190892 154191015 -5408768 - Lx8 LINE L1 -2 7471 7353 3 1761 186 43 0 0 chr3 154191067 154191090 -5408693 + (TG)n Simple_repeat Simple_repeat 1 23 0 3 1761 617 308 70 0 chr3 154192538 154192723 -5407060 + B3A SINE B2 1 198 0 3 1761 333 0 0 0 chr3 154194218 154194255 -5405528 + (CA)n Simple_repeat Simple_repeat 1 37 0 3 1761 519 17 0 0 chr3 154195554 154195614 -5404169 + (CA)n Simple_repeat Simple_repeat 2 61 0 3 1761 251 284 107 10 chr3 154197505 154197608 -5402175 + PB1D10 SINE Alu 5 117 0 3 1761 737 128 33 25 chr3 154198183 154198625 -5401158 + (CA)n Simple_repeat Simple_repeat 1 445 0 3 1761 412 163 28 0 chr3 154198659 154198745 -5401038 + MLT1A LTR MaLR 279 400 -8 3 1761 496 303 27 0 chr3 154199554 154199742 -5400041 - L1MC4 LINE L1 -130 7912 7720 3 1761 252 86 0 0 chr3 154199770 154199805 -5399978 + (TTTA)n Simple_repeat Simple_repeat 3 37 0 3 1761 372 43 0 0 chr3 154199805 154199850 -5399933 + (TG)n Simple_repeat Simple_repeat 1 46 0 3 1761 306 235 56 45 chr3 154200230 154200319 -5399464 - ID_B1 SINE B4 -37 187 98 3 1761 1644 135 106 0 chr3 154200361 154200488 -5399295 + ORR1C1 LTR MaLR 23 163 -215 3 1761 531 0 0 0 chr3 154200488 154200547 -5399236 + (TC)n Simple_repeat Simple_repeat 2 60 0 3 1761 1644 135 106 0 chr3 154200547 154200730 -5399053 + ORR1C1 LTR MaLR 164 365 -13 3 1761 431 320 121 16 chr3 154201038 154201352 -5398431 + L1MC4 LINE L1 7218 7564 -478 3 1761 547 217 13 0 chr3 154201373 154201530 -5398253 + (TG)n Simple_repeat Simple_repeat 1 159 0 3 1761 314 195 0 13 chr3 154201541 154201619 -5398164 + (TG)n Simple_repeat Simple_repeat 2 78 0 3 1761 282 308 21 1 chr3 154201738 154201850 -5397933 - B4 SINE B4 -174 118 5 3 1761 247 277 12 0 chr3 154202162 154202245 -5397538 + L1MC4 LINE L1 7958 8041 -1 3 1761 279 0 0 0 chr3 154202395 154202426 -5397357 + (TG)n Simple_repeat Simple_repeat 1 31 0 3 1761 348 130 0 0 chr3 154202426 154202495 -5397288 + (GA)n Simple_repeat Simple_repeat 2 70 0 3 1761 522 114 0 0 chr3 154204111 154204190 -5395593 + (TCC)n Simple_repeat Simple_repeat 3 81 0 3 1761 474 292 52 12 chr3 154204221 154204434 -5395349 - B4A SINE B4 -4 288 63 3 1761 190 159 29 0 chr3 154204437 154204506 -5395277 + (TTTG)n Simple_repeat Simple_repeat 2 72 0 3 1761 562 257 5 71 chr3 154204545 154204742 -5395041 - RMER1C Other Other -67 1275 1092 3 1761 284 0 28 0 chr3 154204751 154204787 -5394996 + (TG)n Simple_repeat Simple_repeat 2 38 0 3 1761 285 236 116 63 chr3 154204791 154204886 -5394897 - Lx6 LINE L1 -725 6735 6636 3 1761 2097 206 42 98 chr3 154204885 154205761 -5394022 + Lx6 LINE L1 5598 6414 -636 3 1761 691 307 91 81 chr3 154207108 154207281 -5392502 - MLT2B4 LTR ERVL -78 478 286 3 1761 2711 102 16 53 chr3 154207281 154207717 -5392066 + Lx2 LINE L1 6578 6997 0 3 1761 691 307 91 81 chr3 154207717 154208014 -5391769 - MLT2B4 LTR ERVL -271 285 3 3 1761 252 259 58 33 chr3 154209031 154209151 -5390632 + L1M5 LINE L1 5383 5505 -689 3 1761 1046 264 71 33 chr3 154209152 154209203 -5390580 - MTEb LTR MaLR 0 379 326 3 1761 606 28 0 0 chr3 154209203 154209275 -5390508 + (GGAA)n Simple_repeat Simple_repeat 2 73 0 3 1761 1046 264 71 33 chr3 154209275 154209588 -5390195 - MTEb LTR MaLR -54 325 2 3 1761 259 300 75 0 chr3 154209607 154209687 -5390096 + L1M5 LINE L1 5521 5606 -634 3 1761 21 0 0 0 chr3 154212456 154212477 -5387306 + AT_rich Low_complexity Low_complexity 1 21 0 3 1761 4923 75 46 0 chr3 154212483 154213152 -5386631 - L1_Mus3 LINE L1 -7 6631 5932 3 1761 1030 162 21 12 chr3 154215132 154215456 -5384327 + (TATG)n Simple_repeat Simple_repeat 1 326 0 3 1761 2752 242 40 11 chr3 154216392 154217152 -5382631 + RCHARR1 DNA MER1_type 193 974 0 3 1761 22 0 0 0 chr3 154217726 154217748 -5382035 + AT_rich Low_complexity Low_complexity 1 22 0 3 1761 261 0 0 0 chr3 154218213 154218242 -5381541 + (TCTG)n Simple_repeat Simple_repeat 1 29 0 3 1761 3441 60 2 0 chr3 154218287 154218702 -5381081 + Lx3_Mus LINE L1 6359 6774 -235 3 1761 959 260 59 8 chr3 154218698 154218935 -5380848 - RMER1C Other Other -286 1056 808 3 1761 207 100 0 0 chr3 154220070 154220100 -5379683 + (GGGTG)n Simple_repeat Simple_repeat 3 32 0 3 1761 504 250 0 0 chr3 154220497 154220641 -5379142 + (CA)n Simple_repeat Simple_repeat 2 145 0 3 1761 804 230 29 0 chr3 154220824 154220998 -5378785 + B3A SINE B2 4 182 -16 3 1761 23 33 0 0 chr3 154221013 154221043 -5378740 + AT_rich Low_complexity Low_complexity 1 30 0 3 1761 444 184 0 0 chr3 154221876 154221974 -5377809 + (TG)n Simple_repeat Simple_repeat 1 98 0 3 1761 536 286 55 6 chr3 154222169 154222334 -5377449 + MLT1A0 LTR MaLR 41 213 -152 3 1761 459 0 0 0 chr3 154222380 154222431 -5377352 + (TG)n Simple_repeat Simple_repeat 2 52 0 3 1761 395 314 13 0 chr3 154222446 154222599 -5377184 + (TG)n Simple_repeat Simple_repeat 2 156 0 3 1761 2607 155 62 30 chr3 154222736 154223202 -5376581 - Lx5 LINE L1 -149 6901 6421 3 1761 1067 165 60 28 chr3 154223203 154223354 -5376429 + Lx5 LINE L1 6826 6975 -75 3 1761 237 65 0 0 chr3 154223354 154223385 -5376398 + (TG)n Simple_repeat Simple_repeat 2 32 0 3 1761 1067 165 60 28 chr3 154223385 154223451 -5376332 + Lx5 LINE L1 6976 7050 0 3 1761 203 146 20 40 chr3 154223778 154223828 -5375955 + (TG)n Simple_repeat Simple_repeat 1 49 0 3 1761 800 274 84 37 chr3 154223850 154224123 -5375660 - B4A SINE B4 -4 288 3 3 1761 691 294 105 15 chr3 154225656 154225922 -5373861 - MTD LTR MaLR -128 291 2 3 1761 720 260 23 11 chr3 154226348 154226526 -5373257 - B3 SINE B2 -9 186 2 3 1761 644 309 89 36 chr3 154226581 154227439 -5372344 + L1MB7 LINE L1 5143 6073 -111 3 1761 629 110 0 10 chr3 154228863 154228964 -5370819 + (GA)n Simple_repeat Simple_repeat 1 100 0 3 1761 581 294 5 30 chr3 154229493 154229696 -5370087 - B3A SINE B2 0 198 1 3 1761 666 0 0 0 chr3 154231405 154231479 -5368304 + (TC)n Simple_repeat Simple_repeat 1 74 0 3 1761 288 77 0 0 chr3 154232264 154232303 -5367480 + (TAA)n Simple_repeat Simple_repeat 1 39 0 3 1761 1017 15 0 22 chr3 154233488 154233622 -5366161 + (GAAA)n Simple_repeat Simple_repeat 2 132 0 3 1761 843 268 58 12 chr3 154234239 154234496 -5365287 + B4 SINE B4 1 269 -23 3 1761 321 114 62 125 chr3 154234797 154234877 -5364906 + HAL1-3A_ME LINE L1 1938 2012 -846 3 1761 250 297 0 0 chr3 154234877 154234941 -5364842 + (CA)n Simple_repeat Simple_repeat 1 64 0 3 1761 730 133 13 0 chr3 154235045 154235195 -5364588 + (CA)n Simple_repeat Simple_repeat 2 153 0 3 1761 833 165 14 28 chr3 154235698 154235841 -5363942 - B1_Mus1 SINE Alu -7 141 1 3 1761 23 0 0 0 chr3 154235946 154235969 -5363814 + AT_rich Low_complexity Low_complexity 1 23 0 3 1761 341 274 38 0 chr3 154236464 154236570 -5363213 + L1MC4 LINE L1 6936 7045 -997 3 1761 583 331 40 7 chr3 154236796 154237139 -5362644 - Lx9 LINE L1 -3 7470 7113 3 1761 606 282 24 6 chr3 154237277 154237441 -5362342 + MER2 DNA MER2_type 165 331 -14 3 1761 385 311 86 47 chr3 154237439 154237488 -5362295 + ID_B1 SINE B4 26 148 -76 3 1761 217 364 75 8 chr3 154237488 154237552 -5362231 + B1_Mur3 SINE Alu 3 71 -78 3 1761 2110 153 201 38 chr3 154237552 154237996 -5361787 + MT2B2 LTR ERVL 1 524 -60 3 1761 438 79 0 0 chr3 154237996 154238059 -5361724 + (CA)n Simple_repeat Simple_repeat 2 64 0 3 1761 2110 153 201 38 chr3 154238059 154238116 -5361667 + MT2B2 LTR ERVL 525 583 -1 3 1761 385 311 86 47 chr3 154238116 154238130 -5361653 + ID_B1 SINE B4 149 158 -66 3 1761 217 364 75 8 chr3 154238130 154238184 -5361599 + B1_Mur3 SINE Alu 72 143 -6 3 1761 482 328 42 82 chr3 154238533 154238839 -5360944 - ORR1E LTR MaLR -55 304 11 3 1761 234 0 0 0 chr3 154238933 154238959 -5360824 + (TGAA)n Simple_repeat Simple_repeat 2 27 0 3 1761 1559 241 94 18 chr3 154238981 154239471 -5360312 + RLTR11A2 LTR ERVK 1 527 0 4 1761 358 263 40 50 chr3 154239904 154240004 -5359779 + ID_B1 SINE B4 10 108 -116 4 1761 243 0 0 0 chr3 154240056 154240083 -5359700 + (TG)n Simple_repeat Simple_repeat 1 27 0 4 1761 504 0 0 0 chr3 154240083 154240138 -5359645 + (GA)n Simple_repeat Simple_repeat 1 56 0 4 1761 532 172 141 0 chr3 154241985 154242160 -5357623 + MTEa LTR MaLR 1 261 -118 4 1761 258 253 16 54 chr3 154243545 154243831 -5355952 + (CACAG)n Simple_repeat Simple_repeat 1 275 0 4 1761 226 174 27 85 chr3 154243953 154244141 -5355642 + (CAGAGA)n Simple_repeat Simple_repeat 1 177 0 4 1761 207 247 22 61 chr3 154244164 154244345 -5355438 + (CACAG)n Simple_repeat Simple_repeat 2 175 0 4 1761 226 174 27 85 chr3 154244290 154244478 -5355305 + (CAGAGA)n Simple_repeat Simple_repeat 1 177 0 4 1761 228 145 83 59 chr3 154244519 154244688 -5355095 + (CAGAGA)n Simple_repeat Simple_repeat 5 177 0 4 1761 217 259 0 70 chr3 154244630 154244817 -5354966 + (CACAG)n Simple_repeat Simple_repeat 2 175 0 4 1761 258 234 18 53 chr3 154244853 154245024 -5354759 + (CACAA)n Simple_repeat Simple_repeat 5 169 0 4 1761 251 172 16 94 chr3 154245126 154245318 -5354465 + (CAGAGA)n Simple_repeat Simple_repeat 1 177 0 4 1761 236 218 22 71 chr3 154245418 154245601 -5354182 + (CACAG)n Simple_repeat Simple_repeat 2 175 0 4 1761 228 195 12 92 chr3 154245759 154245923 -5353860 + (CACAG)n Simple_repeat Simple_repeat 2 152 0 4 1761 311 146 68 62 chr3 154245878 154246054 -5353729 + (CAGAGA)n Simple_repeat Simple_repeat 1 177 0 4 1761 311 146 68 62 chr3 154246111 154246345 -5353438 + (CAGAGA)n Simple_repeat Simple_repeat 1 235 0 4 1761 215 247 17 64 chr3 154246296 154246469 -5353314 + (CACAA)n Simple_repeat Simple_repeat 5 169 0 4 1761 202 158 130 24 chr3 154246407 154246530 -5353253 + (CAGAGA)n Simple_repeat Simple_repeat 6 141 0 4 1761 299 143 70 58 chr3 154246544 154246787 -5352996 + (CAGAGA)n Simple_repeat Simple_repeat 1 245 0 4 1761 532 184 195 3 chr3 154246823 154246975 -5352808 + L1MB4 LINE L1 6005 6180 0 4 1761 405 176 23 23 chr3 154247491 154247578 -5352205 + B4A SINE B4 2 88 -204 4 1761 259 308 9 46 chr3 154247634 154247743 -5352040 + B4A SINE B4 186 290 -2 4 1761 404 19 19 0 chr3 154247755 154247808 -5351975 + (CA)n Simple_repeat Simple_repeat 1 54 0 4 1761 334 251 25 25 chr3 154247832 154248044 -5351739 + (CATA)n Simple_repeat Simple_repeat 1 212 0 4 1761 333 0 0 0 chr3 154249220 154249257 -5350526 + (CAGA)n Simple_repeat Simple_repeat 2 38 0 4 1761 427 279 129 48 chr3 154249477 154249600 -5350183 + RSINE1 SINE B4 7 142 -23 4 1761 405 39 0 0 chr3 154249600 154249651 -5350132 + (TC)n Simple_repeat Simple_repeat 1 51 0 4 1761 427 279 129 48 chr3 154249651 154249674 -5350109 + RSINE1 SINE B4 143 165 0 4 1761 278 271 9 0 chr3 154249734 154249841 -5349942 + (CA)n Simple_repeat Simple_repeat 1 108 0 4 1761 6009 73 2 3 chr3 154251272 154252360 -5347423 + L1VL4 LINE L1 200 1285 -2274 4 1761 432 0 0 0 chr3 154252520 154252568 -5347215 + (CA)n Simple_repeat Simple_repeat 1 48 0 4 1761 213 288 61 46 chr3 154252600 154252731 -5347052 - L2 LINE L2 -604 2815 2683 4 1761 691 277 95 37 chr3 154253686 154254012 -5345771 + RLTR15 LTR ERVK 1 345 -14 4 1761 1995 168 81 14 chr3 154254803 154255172 -5344611 + ORR1B1 LTR MaLR 1 394 0 4 1761 217 302 121 30 chr3 154255341 154255440 -5344343 + L2 LINE L2 2275 2382 -1037 4 1761 294 262 100 59 chr3 154255513 154255683 -5344100 + MLT1B LTR MaLR 69 245 -145 4 1761 184 245 36 109 chr3 154257273 154257328 -5342455 - MIR SINE MIR -164 98 48 4 1761 232 324 14 14 chr3 154257731 154257803 -5341980 - ID4_ SINE ID 0 83 12 4 1761 307 297 8 83 chr3 154258645 154258766 -5341017 + ID_B1 SINE B4 113 224 0 4 1761 338 274 0 0 chr3 154258787 154258860 -5340923 + ID4 SINE ID 1 73 -10 4 1761 32 81 0 0 chr3 154259004 154259078 -5340705 + AT_rich Low_complexity Low_complexity 1 74 0 4 1761 224 154 19 0 chr3 154259106 154259158 -5340625 + (TA)n Simple_repeat Simple_repeat 2 54 0 4 1761 192 77 0 0 chr3 154260299 154260325 -5339458 + (T)n Simple_repeat Simple_repeat 1 26 0 4 1761 214 250 15 0 chr3 154260578 154260646 -5339137 + GA-rich Low_complexity Low_complexity 2 70 0 4 1761 534 279 8 51 chr3 154261104 154261290 -5338493 - B3 SINE B2 -5 193 15 4 1761 305 311 144 0 chr3 154261587 154261677 -5338106 + PB1D7 SINE Alu 1 103 -17 4 1761 3755 138 101 7 chr3 154262322 154263008 -5336775 + RMER12 LTR ERVK 1 1169 -235 4 1761 342 0 0 0 chr3 154263022 154263060 -5336723 + (TG)n Simple_repeat Simple_repeat 2 39 0 4 1761 605 204 7 93 chr3 154263088 154263239 -5336544 + RMER12 LTR ERVK 1009 1146 -176 4 1761 8016 46 2 4 chr3 154263333 154264301 -5335482 - L1Md_F2 LINE L1 0 6582 5617 4 1761 1230 175 34 26 chr3 154264425 154264700 -5335083 - RLTR22_Mur LTR ERVK 0 1848 1590 4 1761 226 304 34 82 chr3 154264775 154264922 -5334861 - RLTR22_Mur LTR ERVK -803 1045 906 4 1761 3928 150 48 10 chr3 154265001 154265723 -5334060 - RLTR22_Mur LTR ERVK -1098 750 1 4 1761 982 169 11 37 chr3 154265723 154265908 -5333875 + RMER12 LTR ERVK 1143 1322 0 4 1761 459 0 0 0 chr3 154266091 154266142 -5333641 + (TG)n Simple_repeat Simple_repeat 1 51 0 4 1761 416 214 12 23 chr3 154266419 154266505 -5333278 + RMER15 LTR ERVL 356 440 -135 4 1761 420 259 168 0 chr3 154266969 154267100 -5332683 + RSINE1 SINE B4 2 154 -11 4 1761 306 298 85 46 chr3 154267167 154267297 -5332486 + L1ME3B LINE L1 5842 5976 -264 4 1761 1600 164 85 0 chr3 154268521 154268802 -5330981 - MTC LTR MaLR -116 305 1 4 1761 830 179 75 15 chr3 154268802 154269001 -5330782 - MTC-int LTR MaLR 0 1258 1048 4 1761 1055 139 24 0 chr3 154269002 154269168 -5330615 - L1_Mur1 LINE L1 -247 5639 5470 4 1761 2847 158 147 16 chr3 154270649 154271261 -5328522 + RMER6A LTR ERVK 65 756 0 4 220 505 280 6 13 chr3 154271670 154271989 -5327794 + (TCTCTG)n Simple_repeat Simple_repeat 1 316 0 4 1762 309 63 254 0 chr3 154271957 154272099 -5327684 + (CCTG)n Simple_repeat Simple_repeat 1 178 0 4 1762 542 260 0 22 chr3 154272092 154272273 -5327510 + (TCTCTG)n Simple_repeat Simple_repeat 1 177 0 4 1762 391 324 0 13 chr3 154272289 154272638 -5327145 + (TCTCTG)n Simple_repeat Simple_repeat 1 344 0 4 1762 409 316 0 0 chr3 154272668 154272845 -5326938 + (TCTCTG)n Simple_repeat Simple_repeat 1 177 0 4 1762 448 306 3 6 chr3 154272888 154273214 -5326569 + (TCTCTG)n Simple_repeat Simple_repeat 1 324 0 4 1762 1204 266 105 22 chr3 154273383 154273794 -5325989 + RMER5 LTR ERV1 79 523 -11 4 1762 1893 153 46 110 chr3 154274762 154275142 -5324641 - ORR1C2 LTR MaLR 0 384 29 4 1762 619 130 216 16 chr3 154275142 154275267 -5324516 - B1_Mur4 SINE Alu 0 150 1 4 1762 1893 153 46 110 chr3 154275267 154275296 -5324487 - ORR1C2 LTR MaLR -356 28 1 4 1762 722 224 95 120 chr3 154275296 154275698 -5324085 - ORR1D1 LTR MaLR -7 367 1 4 1762 233 256 315 25 chr3 154276985 154277185 -5322598 - Lx8 LINE L1 -83 7390 7133 4 1762 642 286 47 47 chr3 154279491 154279748 -5320035 + RCHARR1 DNA MER1_type 467 723 -251 4 1762 365 137 64 220 chr3 154279831 154280043 -5319740 + B1F SINE Alu 1 149 0 4 1762 939 188 170 10 chr3 154281138 154281332 -5318451 - URR1B DNA MER1_type 0 225 1 4 1762 288 0 0 0 chr3 154282323 154282355 -5317428 + (A)n Simple_repeat Simple_repeat 1 32 0 4 1762 209 250 0 32 chr3 154282560 154282622 -5317161 + CT-rich Low_complexity Low_complexity 4 63 0 4 1762 333 68 0 0 chr3 154283021 154283065 -5316718 + (TG)n Simple_repeat Simple_repeat 1 44 0 4 1762 606 291 41 0 chr3 154283069 154283241 -5316542 - B4A SINE B4 -6 286 108 4 1762 675 133 23 0 chr3 154284133 154284261 -5315522 + (CA)n Simple_repeat Simple_repeat 1 131 0 4 1762 528 217 0 70 chr3 154285436 154285565 -5314218 - PB1D7 SINE Alu 0 120 1 4 1762 2223 217 106 19 chr3 154286837 154287260 -5312523 + RLTR20B1 LTR ERVK 1 468 -95 4 1762 294 123 0 0 chr3 154287260 154287317 -5312466 + (TG)n Simple_repeat Simple_repeat 2 58 0 4 1762 2223 217 106 19 chr3 154287317 154287411 -5312372 + RLTR20B1 LTR ERVK 469 562 -1 4 1762 261 0 0 0 chr3 154288174 154288203 -5311580 + (TG)n Simple_repeat Simple_repeat 2 30 0 4 1762 530 267 81 109 chr3 154288204 154288477 -5311306 - MLT2C1 LTR ERVL -8 389 109 4 1762 313 293 98 33 chr3 154289025 154289240 -5310543 - RLTR15 LTR ERVK -25 334 106 4 1762 258 235 92 128 chr3 154289248 154289443 -5310340 - RLTR15 LTR ERVK -171 188 1 4 1762 204 40 0 0 chr3 154290397 154290422 -5309361 + (TTAA)n Simple_repeat Simple_repeat 1 25 0 4 1762 354 308 111 43 chr3 154290430 154290637 -5309146 + L1M5 LINE L1 5595 5815 -309 4 1762 277 167 37 0 chr3 154290801 154290855 -5308928 - MTEb LTR MaLR 0 379 324 4 1762 921 156 105 21 chr3 154290852 154291042 -5308741 + MTD LTR MaLR 200 405 -14 4 1762 21 57 0 0 chr3 154291050 154291085 -5308698 + AT_rich Low_complexity Low_complexity 1 35 0 4 1762 363 304 122 0 chr3 154291171 154291286 -5308497 - RSINE1 SINE B4 -36 129 1 4 1762 285 299 23 0 chr3 154291390 154291564 -5308219 + (CTCA)n Simple_repeat Simple_repeat 1 178 0 4 1762 1220 65 6 12 chr3 154291720 154291890 -5307893 + B2_Mm2 SINE B2 2 170 -25 4 1762 359 269 106 0 chr3 154293330 154293434 -5306349 - MLT1A0 LTR MaLR -6 359 245 4 1762 309 278 108 36 chr3 154293500 154293750 -5306033 - RMER17C LTR ERVK -60 350 83 4 1762 306 197 14 0 chr3 154293761 154293821 -5305962 - B3A SINE B2 -99 96 33 4 1762 6965 60 23 2 chr3 154293920 154294795 -5304988 + RLTR13B1 LTR ERVK 1 893 0 4 1762 214 298 183 9 chr3 154297089 154297204 -5302579 - L2b LINE L2 0 3375 3241 4 1762 213 321 115 35 chr3 154297393 154297506 -5302277 - L2b LINE L2 -292 3134 3013 4 1762 1241 172 13 13 chr3 154297748 154297972 -5301811 + ORR1D1 LTR MaLR 1 224 -150 4 1762 435 19 0 0 chr3 154298349 154298401 -5301382 + (TG)n Simple_repeat Simple_repeat 2 53 0 4 1762 542 227 65 84 chr3 154298402 154298556 -5301227 - B3A SINE B2 -46 152 2 4 1762 215 152 22 0 chr3 154298561 154298607 -5301176 + (CGA)n Simple_repeat Simple_repeat 2 48 0 4 1762 457 298 209 17 chr3 154299213 154299452 -5300331 - B4A SINE B4 -5 287 3 4 1762 249 275 65 11 chr3 154299610 154299702 -5300081 - PB1D10 SINE Alu 0 117 21 4 1762 1369 95 0 0 chr3 154300227 154300417 -5299366 - ORR1B1 LTR MaLR -8 386 197 4 1762 1367 269 72 27 chr3 154300477 154300963 -5298820 - RLTR12B LTR ERVK -20 508 1 4 1762 727 184 49 8 chr3 154300963 154301126 -5298657 - ORR1B1 LTR MaLR -210 160 1 4 1762 596 148 9 0 chr3 154301729 154301837 -5297946 + CT-rich Low_complexity Low_complexity 2 110 0 5 1762 1069 88 0 33 chr3 154301840 154301992 -5297791 - B1_Mus1 SINE Alu 0 148 2 5 1762 6436 17 0 1 chr3 154302544 154303266 -5296517 - L1Md_A LINE L1 0 6582 5862 5 1762 41435 11 2 7 chr3 154303286 154309667 -5290116 - L1Md_T LINE L1 0 6582 239 5 1762 207 0 0 0 chr3 154309816 154309839 -5289944 + (A)n Simple_repeat Simple_repeat 1 23 0 5 1762 593 224 109 30 chr3 154310959 154311161 -5288622 - ID_B1 SINE B4 -2 222 5 5 1762 345 203 27 0 chr3 154311573 154311647 -5288136 + Lx9 LINE L1 7056 7131 -513 5 1762 936 0 0 0 chr3 154313414 154313518 -5286265 + (TCTCC)n Simple_repeat Simple_repeat 4 107 0 5 1762 186 43 0 0 chr3 154313520 154313543 -5286240 + (TCCC)n Simple_repeat Simple_repeat 2 24 0 5 1762 272 219 42 11 chr3 154313556 154313745 -5286038 - RMER17C LTR ERVK -133 277 83 5 1762 262 258 0 15 chr3 154314497 154314564 -5285219 + MER102a DNA MER1_type 94 159 -171 5 1762 335 296 136 34 chr3 154316221 154316368 -5283415 + MIRb SINE MIR 70 231 -37 5 1762 704 43 11 0 chr3 154317243 154317335 -5282448 + (GA)n Simple_repeat Simple_repeat 2 94 0 5 1762 268 197 13 90 chr3 154318210 154318288 -5281495 - ID2 SINE ID -11 72 1 5 1762 230 0 0 32 chr3 154319191 154319222 -5280561 + (TCTG)n Simple_repeat Simple_repeat 1 30 0 5 1762 543 311 133 81 chr3 154319877 154320222 -5279561 + ORR1E LTR MaLR 5 369 -1 5 1762 365 295 4 0 chr3 154320532 154320785 -5278998 + (TG)n Simple_repeat Simple_repeat 1 254 0 5 1762 982 262 22 40 chr3 154320785 154321063 -5278720 - B4A SINE B4 0 292 20 5 1762 806 301 110 39 chr3 154321427 154321808 -5277975 - MLT1A1 LTR MaLR 0 408 1 5 1762 618 229 6 11 chr3 154322277 154322458 -5277325 + (TG)n Simple_repeat Simple_repeat 1 180 0 5 1762 864 178 0 0 chr3 154322470 154322650 -5277133 + (TG)n Simple_repeat Simple_repeat 1 180 0 5 1762 268 324 141 46 chr3 154322872 154323176 -5276607 - MER58B DNA MER1_type -6 335 3 5 1762 334 231 58 23 chr3 154324103 154324183 -5275600 + (TCTA)n Simple_repeat Simple_repeat 1 83 0 5 1762 1576 168 263 6 chr3 154324183 154324518 -5275265 - MTC LTR MaLR 0 421 1 5 1762 334 231 58 23 chr3 154324518 154324535 -5275248 + (TCTA)n Simple_repeat Simple_repeat 4 20 0 5 1762 2272 161 20 40 chr3 154324535 154324937 -5274846 + ORR1B1 LTR MaLR 1 394 0 5 1762 1234 110 25 7 chr3 154324937 154325186 -5274597 + (TCTA)n Simple_repeat Simple_repeat 1 253 0 5 1762 183 80 0 0 chr3 154325466 154325491 -5274292 + (T)n Simple_repeat Simple_repeat 1 25 0 5 1762 243 61 0 0 chr3 154325653 154325686 -5274097 + (GGGAGA)n Simple_repeat Simple_repeat 6 38 0 5 1762 300 225 8 105 chr3 154325686 154325810 -5273973 + ORR1E LTR MaLR 68 179 -180 5 1762 525 16 0 0 chr3 154326794 154326856 -5272927 + (TG)n Simple_repeat Simple_repeat 2 63 0 5 1762 478 336 0 8 chr3 154329256 154329388 -5270395 + B1_Mur1 SINE Alu 14 144 -5 5 1762 247 344 40 24 chr3 154331092 154331217 -5268566 - Charlie2a DNA MER1_type -2729 132 6 5 1762 3004 52 31 15 chr3 154332783 154333175 -5266608 - MTB LTR MaLR 0 400 3 5 1762 512 286 80 109 chr3 154333363 154333701 -5266082 + MLT1B LTR MaLR 59 386 -4 5 1762 1066 218 147 20 chr3 154333769 154334124 -5265659 - RMER17B LTR ERVK -5 953 554 5 1762 1580 178 55 14 chr3 154334146 154334493 -5265290 - RMER17B LTR ERVK -597 361 1 5 1762 563 290 44 64 chr3 154334587 154334885 -5264898 - MLT1A0 LTR MaLR -36 329 38 5 1762 2144 92 14 28 chr3 154335081 154335438 -5264345 + RLTR15 LTR ERVK 8 359 0 5 1762 258 105 0 0 chr3 154336330 154336368 -5263415 + (TG)n Simple_repeat Simple_repeat 1 38 0 5 1762 989 242 39 43 chr3 154336369 154336649 -5263134 - MTE2b LTR MaLR -67 312 34 5 1762 21 0 0 0 chr3 154337100 154337121 -5262662 + AT_rich Low_complexity Low_complexity 1 21 0 5 1762 378 0 0 0 chr3 154337253 154337295 -5262488 + (TG)n Simple_repeat Simple_repeat 1 42 0 5 1762 1332 171 52 52 chr3 154338154 154338177 -5261606 - Lx3C LINE L1 0 6976 6962 5 1762 319 21 0 40 chr3 154338177 154338227 -5261556 + (TTTA)n Simple_repeat Simple_repeat 1 48 0 5 1762 1332 171 52 52 chr3 154338227 154338511 -5261272 - Lx3C LINE L1 -15 6961 6669 5 1762 459 0 0 0 chr3 154338695 154338746 -5261037 + (TC)n Simple_repeat Simple_repeat 2 52 0 5 1762 233 303 39 39 chr3 154339000 154339103 -5260680 - MLT2B3 LTR ERVL -451 103 1 5 1762 396 0 0 0 chr3 154339113 154339157 -5260626 + (CA)n Simple_repeat Simple_repeat 1 44 0 5 1762 738 53 0 0 chr3 154339164 154339259 -5260524 + (GGGAGA)n Simple_repeat Simple_repeat 3 97 0 5 1762 180 0 0 0 chr3 154339318 154339338 -5260445 + (T)n Simple_repeat Simple_repeat 1 20 0 5 1762 344 22 0 22 chr3 154339640 154339686 -5260097 + (TG)n Simple_repeat Simple_repeat 1 45 0 5 1762 237 203 28 28 chr3 154339713 154339784 -5259999 + (TG)n Simple_repeat Simple_repeat 1 71 0 5 1762 1101 194 39 0 chr3 154339822 154340028 -5259755 - B3 SINE B2 -1 215 2 5 1762 623 263 83 69 chr3 154340531 154340974 -5258809 - RLTR11B LTR ERVK -24 504 1 5 1762 411 324 27 67 chr3 154341849 154341998 -5257785 + B1_Mus1 SINE Alu 5 147 -1 5 1762 916 75 0 15 chr3 154343136 154343272 -5256511 + (GAA)n Simple_repeat Simple_repeat 1 134 0 5 1762 2263 79 56 0 chr3 154343339 154343642 -5256141 - Lx LINE L1 -257 6397 6078 5 1762 1491 128 0 19 chr3 154343642 154343898 -5255885 + Lx LINE L1 6404 6654 0 5 1762 22 0 0 0 chr3 154344825 154344847 -5254936 + AT_rich Low_complexity Low_complexity 1 22 0 5 1762 1098 200 28 5 chr3 154344876 154345087 -5254696 - B3 SINE B2 0 216 1 5 1762 441 0 0 0 chr3 154346035 154346084 -5253699 + (TA)n Simple_repeat Simple_repeat 1 49 0 5 1762 275 289 100 0 chr3 154347874 154347964 -5251819 - MER63B DNA AcHobo -28 408 310 5 1762 306 0 0 0 chr3 154348191 154348225 -5251558 + (CA)n Simple_repeat Simple_repeat 1 34 0 5 1762 183 129 0 0 chr3 154348546 154348577 -5251206 + (A)n Simple_repeat Simple_repeat 1 31 0 5 1762 1883 316 103 95 chr3 154348718 154350021 -5249762 - L1_Mur3 LINE L1 -141 5739 4269 5 1762 243 0 0 0 chr3 154350021 154350048 -5249735 + (TTTA)n Simple_repeat Simple_repeat 3 29 0 5 1762 1883 316 103 95 chr3 154350048 154350756 -5249027 - L1_Mur3 LINE L1 -1612 4268 3560 5 1762 400 298 21 28 chr3 154350756 154350901 -5248882 - RSINE1 SINE B4 -20 145 2 5 1762 1883 316 103 95 chr3 154350901 154352123 -5247660 - L1_Mur3 LINE L1 -1612 3559 2334 5 1762 454 31 31 0 chr3 154352202 154352266 -5247517 + (TCTA)n Simple_repeat Simple_repeat 3 68 0 5 1762 440 261 79 89 chr3 154352281 154352672 -5247111 - L1M2 LINE L1 -4447 2102 1637 5 1762 3751 166 24 5 chr3 154352756 154353385 -5246398 - Lx5 LINE L1 0 7050 6410 5 1762 796 296 116 13 chr3 154353983 154354301 -5245482 - MTE2b LTR MaLR -21 358 8 5 1762 348 256 33 104 chr3 154354324 154354571 -5245212 + MLT-int LTR MaLR 180 410 -961 5 1762 324 0 0 0 chr3 154355947 154355983 -5243800 + (CA)n Simple_repeat Simple_repeat 2 37 0 5 1762 192 179 0 0 chr3 154357550 154357589 -5242194 + (TATATG)n Simple_repeat Simple_repeat 4 42 0 5 1762 337 275 48 70 chr3 154357742 154357864 -5241919 - B1F2 SINE Alu -3 124 1 5 1762 219 114 0 0 chr3 154359206 154359241 -5240542 + (T)n Simple_repeat Simple_repeat 1 35 0 5 1762 238 333 37 37 chr3 154360332 154360441 -5239342 + B3A SINE B2 71 179 -19 5 1762 405 0 0 0 chr3 154360444 154360489 -5239294 + (CA)n Simple_repeat Simple_repeat 1 45 0 5 1762 774 0 0 0 chr3 154360715 154360801 -5238982 + (TA)n Simple_repeat Simple_repeat 2 87 0 5 1762 843 155 17 0 chr3 154361266 154361440 -5238343 + CT-rich Low_complexity Low_complexity 1 177 0 5 1762 370 289 169 28 chr3 154362858 154363107 -5236676 + B4A SINE B4 1 284 -8 5 1762 496 341 0 0 chr3 154364712 154364850 -5234933 + B1F SINE Alu 2 139 -10 5 1762 366 252 1 5 chr3 154364879 154364981 -5234802 + B3A SINE B2 16 117 -81 5 1762 3080 93 2 5 chr3 154365331 154365764 -5234019 + L1_Mus4 LINE L1 6205 6636 0 5 1762 431 291 93 59 chr3 154370102 154370456 -5229327 - ORR1D2 LTR MaLR 0 370 5 5 1762 367 370 101 25 chr3 154370526 154370881 -5228902 - MLT1J LTR MaLR -129 383 2 5 1762 672 326 120 41 chr3 154371571 154372038 -5227745 - LTR33 LTR ERVL 0 515 12 5 1762 394 291 61 42 chr3 154373977 154374189 -5225594 - MamRep605 Unknown Unknown -336 540 325 5 1762 366 348 25 6 chr3 154374192 154374354 -5225429 - MamRep605 Unknown Unknown -489 387 223 5 1762 26 30 0 0 chr3 154375777 154375810 -5223973 + AT_rich Low_complexity Low_complexity 1 33 0 5 1762 8232 82 8 4 chr3 154377210 154378996 -5220787 - L1_Mus3 LINE L1 -2 6636 4844 5 1762 213 39 0 0 chr3 154380013 154380039 -5219744 + (TAA)n Simple_repeat Simple_repeat 2 27 0 5 1762 1003 237 136 34 chr3 154380044 154380367 -5219416 - Lx8 LINE L1 -150 7323 6968 5 1762 1966 247 80 39 chr3 154380450 154381242 -5218541 - L1_Mur3 LINE L1 -2676 3204 2381 5 1762 200 180 40 0 chr3 154381562 154381612 -5218171 + (TA)n Simple_repeat Simple_repeat 2 53 0 5 1762 189 0 0 0 chr3 154382407 154382428 -5217355 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 5 1762 1703 201 126 11 chr3 154386120 154386598 -5213185 - MT2A LTR ERVL 0 533 1 5 1762 495 82 0 0 chr3 154387131 154387204 -5212579 + (TG)n Simple_repeat Simple_repeat 2 74 0 5 1762 1543 45 0 15 chr3 154388144 154388345 -5211438 - L1Md_F3 LINE L1 -14 6570 6373 5 1762 695 247 40 20 chr3 154388730 154388928 -5210855 - B3 SINE B2 0 216 15 5 1762 309 51 0 0 chr3 154389482 154389521 -5210262 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 5 1762 859 60 15 15 chr3 154390855 154390990 -5208793 + (TCTCTG)n Simple_repeat Simple_repeat 2 136 0 5 1762 536 289 67 19 chr3 154391080 154391288 -5208495 + B4A SINE B4 1 218 -74 5 1762 266 305 42 51 chr3 154391397 154391611 -5208172 - L2 LINE L2 -868 2551 2340 5 1762 191 280 108 50 chr3 154391712 154391851 -5207932 - L2 LINE L2 -1232 2187 2041 5 1762 434 319 151 34 chr3 154391859 154392183 -5207600 - MTEa LTR MaLR -10 369 8 6 1762 193 255 170 0 chr3 154392775 154392881 -5206902 - L2 LINE L2 -1905 1514 1391 5 1762 734 286 94 12 chr3 154393067 154393386 -5206397 + ORR1E LTR MaLR 10 354 -5 6 1762 1093 58 15 0 chr3 154393607 154393744 -5206039 + B1_Mus2 SINE Alu 1 139 -8 6 1762 269 26 26 0 chr3 154393744 154393782 -5206001 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 6 1762 2417 60 9 3 chr3 154393873 154394190 -5205593 - L1_Mus1 LINE L1 -1 6566 6248 6 1762 651 294 5 40 chr3 154395581 154395783 -5204000 - B3A SINE B2 -2 196 2 6 1762 507 153 21 0 chr3 154395814 154395958 -5203825 + (TCTA)n Simple_repeat Simple_repeat 1 146 0 6 1762 26 30 0 0 chr3 154396111 154396144 -5203639 + AT_rich Low_complexity Low_complexity 1 33 0 6 1762 265 251 64 8 chr3 154398546 154398649 -5201134 - MIRc SINE MIR -136 140 34 6 1762 584 232 164 41 chr3 154398764 154398984 -5200799 + B4A SINE B4 1 247 -45 6 1762 194 242 0 15 chr3 154399130 154399197 -5200586 + (CA)n Simple_repeat Simple_repeat 1 66 0 6 1762 340 156 16 0 chr3 154399251 154399315 -5200468 + HAL1-3A_ME LINE L1 1974 2038 -820 6 1762 408 362 36 52 chr3 154399353 154399543 -5200240 - MER44A DNA MER2_type -9 330 132 6 1762 254 258 44 29 chr3 154399543 154399611 -5200172 + ID4_ SINE ID 2 70 -13 6 1762 408 362 36 52 chr3 154399611 154399749 -5200034 - MER44A DNA MER2_type -208 131 8 6 1762 731 265 27 16 chr3 154400400 154400588 -5199195 + B3A SINE B2 1 190 -8 6 1762 215 214 40 67 chr3 154400635 154400710 -5199073 + (CACAA)n Simple_repeat Simple_repeat 2 74 0 6 1762 378 0 0 0 chr3 154402523 154402565 -5197218 + (CA)n Simple_repeat Simple_repeat 2 43 0 6 1763 714 117 0 0 chr3 154404328 154404439 -5195344 + (TG)n Simple_repeat Simple_repeat 2 112 0 6 1763 198 91 0 0 chr3 154404936 154404969 -5194814 + (T)n Simple_repeat Simple_repeat 1 33 0 6 1763 245 188 0 0 chr3 154406603 154406651 -5193132 - Lx8 LINE L1 -4 7469 7422 6 1763 252 0 0 0 chr3 154406831 154406859 -5192924 + (TTTA)n Simple_repeat Simple_repeat 3 30 0 6 1763 653 251 52 16 chr3 154406860 154407054 -5192729 - B3 SINE B2 -7 209 9 6 1763 310 312 73 0 chr3 154407183 154407292 -5192491 - PB1D10 SINE Alu 0 117 1 6 1763 833 166 25 0 chr3 154407729 154407892 -5191891 + URR1A DNA MER1_type 60 226 0 6 1763 35 54 0 0 chr3 154408909 154408965 -5190818 + AT_rich Low_complexity Low_complexity 1 56 0 6 1763 195 100 0 0 chr3 154411022 154411052 -5188731 + (CAAAA)n Simple_repeat Simple_repeat 4 33 0 6 1763 227 160 20 0 chr3 154412897 154412947 -5186836 + Lx9 LINE L1 7586 7636 -8 6 1763 279 243 79 26 chr3 154413411 154413487 -5186296 + ID4 SINE ID 2 81 -2 6 1763 279 0 0 0 chr3 154415971 154416002 -5183781 + (TG)n Simple_repeat Simple_repeat 2 32 0 6 1763 207 250 0 0 chr3 154416669 154416713 -5183070 + G-rich Low_complexity Low_complexity 6 49 0 6 1763 306 0 0 0 chr3 154418192 154418226 -5181557 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 6 1763 21 36 0 0 chr3 154420147 154420175 -5179608 + AT_rich Low_complexity Low_complexity 1 28 0 6 1763 248 375 51 7 chr3 154421005 154421142 -5178641 - MIRb SINE MIR -85 183 41 6 1763 409 284 108 36 chr3 154422115 154422254 -5177529 + RSINE1 SINE B4 17 165 0 6 1763 202 211 0 37 chr3 154422365 154422419 -5177364 + (TATATG)n Simple_repeat Simple_repeat 2 53 0 6 1763 301 109 0 0 chr3 154422420 154422466 -5177317 - ORR1D1 LTR MaLR 0 374 329 6 1763 481 275 81 39 chr3 154422466 154422785 -5176998 - MT2A LTR ERVL 0 584 94 6 1763 518 207 17 25 chr3 154422793 154422912 -5176871 - MT2A LTR ERVL -415 118 1 6 1763 688 208 264 25 chr3 154422912 154423178 -5176605 - ORR1D1 LTR MaLR -40 334 3 6 1763 1035 235 14 32 chr3 154423180 154423461 -5176322 - ORR1D1-int LTR MaLR 0 1370 1095 6 1763 371 165 18 88 chr3 154423453 154423566 -5176217 - ORR1D1 LTR MaLR -268 106 2 6 1763 393 285 21 152 chr3 154423598 154423834 -5175949 - B4A SINE B4 0 292 88 6 1763 401 259 30 65 chr3 154423910 154424079 -5175704 + RSINE1 SINE B4 3 165 0 6 1763 342 0 0 0 chr3 154431199 154431237 -5168546 + (TG)n Simple_repeat Simple_repeat 2 39 0 6 1763 207 100 0 0 chr3 154431847 154431877 -5167906 + (T)n Simple_repeat Simple_repeat 1 30 0 6 1763 1077 298 81 36 chr3 154432382 154433109 -5166674 + Charlie2b DNA MER1_type 1786 2545 -237 6 1763 400 121 0 0 chr3 154433614 154433680 -5166103 - ORR1A3 LTR MaLR 0 326 261 6 1763 285 246 31 0 chr3 154433677 154433742 -5166041 - B1_Mus2 SINE Alu -78 69 3 6 1763 285 236 0 212 chr3 154433742 154433827 -5165956 - MT2B LTR ERVL -342 259 199 6 1763 2917 129 12 2 chr3 154433825 154434307 -5165476 - ORR1A2-int LTR MaLR -1476 487 1 6 1763 2300 99 9 30 chr3 154434307 154434641 -5165142 - ORR1A2 LTR MaLR 0 327 1 6 1763 4063 92 26 2 chr3 154434880 154435447 -5164336 + Lx3_Mus LINE L1 6429 7009 0 6 1763 293 227 0 7 chr3 154435913 154436055 -5163728 + (CA)n Simple_repeat Simple_repeat 2 142 0 6 1763 243 250 0 0 chr3 154436097 154436229 -5163554 + (CA)n Simple_repeat Simple_repeat 2 133 0 6 1763 325 233 13 158 chr3 154436562 154436720 -5163063 - B1F SINE Alu -10 139 5 6 1763 274 280 46 21 chr3 154437681 154437821 -5161962 - MLT1A1 LTR MaLR -12 396 211 6 1763 298 221 39 0 chr3 154438100 154438177 -5161606 - URR1B DNA MER1_type 0 225 146 6 1763 191 88 29 0 chr3 154439481 154439515 -5160268 + (TG)n Simple_repeat Simple_repeat 1 35 0 6 1763 508 322 67 22 chr3 154439546 154439813 -5159970 - B4A SINE B4 -13 279 1 6 1763 342 0 0 0 chr3 154440644 154440682 -5159101 + (TG)n Simple_repeat Simple_repeat 1 38 0 6 1763 329 0 24 0 chr3 154440682 154440722 -5159061 + (GA)n Simple_repeat Simple_repeat 1 42 0 6 1763 512 281 16 0 chr3 154441659 154441787 -5157996 - MTEa LTR MaLR -1 378 249 6 1763 931 259 100 11 chr3 154441819 154442088 -5157695 - MTEa LTR MaLR -86 293 1 6 1763 876 321 63 42 chr3 154442641 154443164 -5156619 - RMER5 LTR ERV1 0 534 1 6 1763 328 348 53 18 chr3 154443251 154443365 -5156418 + RSINE1 SINE B4 48 165 0 6 1763 210 191 0 0 chr3 154443365 154443407 -5156376 + (CATATA)n Simple_repeat Simple_repeat 1 42 0 6 1763 396 308 98 47 chr3 154444672 154444948 -5154835 + B4 SINE B4 1 275 -17 6 1763 342 320 26 26 chr3 154445656 154445807 -5153976 + GA-rich Low_complexity Low_complexity 2 152 0 6 1763 257 242 48 117 chr3 154447270 154447373 -5152410 - PB1D10 SINE Alu -6 111 16 6 1763 312 195 61 30 chr3 154447462 154447594 -5152189 + (TAGA)n Simple_repeat Simple_repeat 3 138 0 6 1763 271 239 28 0 chr3 154447659 154447730 -5152053 + (TATATG)n Simple_repeat Simple_repeat 6 78 0 6 1763 237 331 146 0 chr3 154447731 154447861 -5151922 - MLT2B1 LTR ERVL -69 498 350 6 1763 351 293 75 37 chr3 154447891 154448079 -5151704 - MLT2B1 LTR ERVL -325 195 1 6 1763 250 276 51 77 chr3 154448402 154448426 -5151357 - B2_Mm2 SINE B2 -3 192 173 6 1763 3305 50 0 8 chr3 154448426 154448825 -5150958 + MTA_Mm LTR MaLR 1 396 0 6 1763 596 258 18 25 chr3 154448833 154448996 -5150787 - RSINE1 SINE B4 -1 164 3 6 1763 290 268 12 31 chr3 154450820 154450982 -5148801 + (TATG)n Simple_repeat Simple_repeat 4 162 0 6 1763 265 302 23 0 chr3 154450990 154451076 -5148707 + (TG)n Simple_repeat Simple_repeat 1 88 0 6 1763 7479 103 38 15 chr3 154451144 154452271 -5147512 - Lx2 LINE L1 -2 6995 5843 6 1763 877 288 169 47 chr3 154452777 154452877 -5146906 + Lx8 LINE L1 6971 7073 -400 6 1763 2391 138 86 0 chr3 154452877 154453262 -5146521 - MTC LTR MaLR -3 418 1 6 1763 877 288 169 47 chr3 154453262 154453605 -5146178 + Lx8 LINE L1 7074 7468 -5 6 1763 305 296 34 0 chr3 154453979 154454067 -5145716 - Lx8 LINE L1 -255 7218 7128 6 1763 1001 200 50 0 chr3 154454095 154454295 -5145488 + B3 SINE B2 1 210 -6 6 1763 26 64 0 0 chr3 154454300 154454347 -5145436 + AT_rich Low_complexity Low_complexity 1 47 0 6 1763 208 280 13 13 chr3 154455477 154455553 -5144230 + (CA)n Simple_repeat Simple_repeat 2 77 0 6 1763 326 358 7 0 chr3 154456867 154457004 -5142779 + L2 LINE L2 2730 2867 -552 6 1763 240 276 71 10 chr3 154457395 154457494 -5142289 + L2a LINE L2 3322 3426 0 6 1763 252 229 0 0 chr3 154459567 154459615 -5140168 + (TG)n Simple_repeat Simple_repeat 1 48 0 6 1763 576 186 0 0 chr3 154459618 154459736 -5140047 + (TA)n Simple_repeat Simple_repeat 2 119 0 6 1763 226 258 0 24 chr3 154459782 154459905 -5139878 + (TATG)n Simple_repeat Simple_repeat 4 123 0 6 1763 515 189 0 8 chr3 154460947 154461080 -5138703 + (CA)n Simple_repeat Simple_repeat 2 133 0 6 1763 412 317 0 6 chr3 154461105 154461348 -5138435 + (CA)n Simple_repeat Simple_repeat 1 241 0 6 1763 426 120 0 0 chr3 154461361 154461436 -5138347 + (CA)n Simple_repeat Simple_repeat 1 75 0 6 1763 384 40 0 0 chr3 154461722 154461772 -5138011 + (TG)n Simple_repeat Simple_repeat 2 51 0 6 1763 767 153 7 0 chr3 154462787 154462937 -5136846 + (CA)n Simple_repeat Simple_repeat 2 152 0 6 1763 233 206 46 31 chr3 154465401 154465466 -5134317 - L1MC4 LINE L1 -1181 6861 6796 6 1763 213 359 38 23 chr3 154466579 154466710 -5133073 - MIRm SINE MIR -132 144 12 6 1763 546 293 30 115 chr3 154467995 154468230 -5131553 - ID_B1 SINE B4 0 224 10 6 1763 539 275 93 0 chr3 154470577 154470759 -5129024 + ID_B1 SINE B4 6 204 -20 6 1763 295 268 101 40 chr3 154471260 154471408 -5128375 + MER5A DNA MER1_type 4 160 -29 6 1763 232 298 0 0 chr3 154472808 154472865 -5126918 + ID4 SINE ID 9 65 -18 6 1763 583 144 45 4 chr3 154472945 154473189 -5126594 + (TAGA)n Simple_repeat Simple_repeat 1 254 0 6 1763 1182 58 23 0 chr3 154475127 154475298 -5124485 + (TTCC)n Simple_repeat Simple_repeat 2 176 0 6 1763 1076 96 11 11 chr3 154475318 154475497 -5124286 + (TTCC)n Simple_repeat Simple_repeat 1 179 0 6 1763 396 0 0 0 chr3 154476512 154476556 -5123227 + (TAA)n Simple_repeat Simple_repeat 2 45 0 6 1763 551 232 88 40 chr3 154476829 154476977 -5122806 + RSINE1 SINE B4 11 165 0 6 1763 267 320 0 0 chr3 154476977 154477179 -5122604 + (CA)n Simple_repeat Simple_repeat 1 202 0 6 1763 4370 115 39 0 chr3 154477238 154477880 -5121903 - Lx3C LINE L1 -148 6828 6162 6 1763 202 261 46 0 chr3 154478667 154478732 -5121051 - MER5A DNA MER1_type -118 71 4 6 1763 389 333 68 0 chr3 154478864 154478996 -5120787 + MIRb SINE MIR 20 160 -108 6 1763 22 0 0 0 chr3 154481119 154481141 -5118642 + AT_rich Low_complexity Low_complexity 1 22 0 7 1763 361 321 73 90 chr3 154481325 154481558 -5118225 - B4 SINE B4 -16 276 48 7 1763 192 40 0 0 chr3 154482336 154482361 -5117422 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 7 1763 950 78 0 0 chr3 154482913 154483041 -5116742 + B1_Mus1 SINE Alu 6 133 -15 7 1763 348 310 55 160 chr3 154483563 154483682 -5116101 + B3A SINE B2 1 130 -68 7 1763 237 33 0 0 chr3 154483682 154483712 -5116071 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 7 1763 348 310 55 160 chr3 154483712 154483811 -5115972 + B3A SINE B2 131 196 -2 7 1763 252 0 0 0 chr3 154484736 154484764 -5115019 + (A)n Simple_repeat Simple_repeat 1 28 0 7 1763 687 128 0 0 chr3 154484871 154484980 -5114803 + (GA)n Simple_repeat Simple_repeat 2 110 0 7 1763 280 250 154 34 chr3 154485197 154485346 -5114437 + B3A SINE B2 19 185 -13 7 1763 239 265 144 56 chr3 154485455 154485615 -5114168 + L1M5 LINE L1 4483 4656 -1490 7 1763 974 232 94 27 chr3 154486014 154486311 -5113472 + ORR1E LTR MaLR 25 341 -18 7 1763 378 0 0 0 chr3 154487294 154487336 -5112447 + (TG)n Simple_repeat Simple_repeat 1 42 0 7 1763 402 57 0 0 chr3 154487336 154487389 -5112394 + (GA)n Simple_repeat Simple_repeat 2 54 0 7 1763 206 324 73 0 chr3 154488660 154488728 -5111055 + MER5B DNA MER1_type 105 177 -1 7 1763 504 308 41 5 chr3 154489866 154490062 -5109721 - L1M4 LINE L1 -350 5824 5622 7 1763 1661 212 38 27 chr3 154490994 154491367 -5108416 - MTE2a LTR MaLR -2 377 1 7 1763 343 318 30 54 chr3 154491442 154491645 -5108138 - L3 LINE CR1 -278 4211 4014 7 1763 2234 170 39 15 chr3 154492215 154492626 -5107157 - MTC LTR MaLR 0 421 1 7 1763 467 181 154 6 chr3 154492627 154492783 -5107000 - MTC-int LTR MaLR -1 1257 1079 7 1763 3776 42 2 0 chr3 154492786 154493237 -5106546 + L1Md_F2 LINE L1 5132 5583 -300 7 1763 7833 56 15 5 chr3 154493240 154494224 -5105559 + L1Md_F2 LINE L1 5587 6580 -2 7 1763 627 168 114 11 chr3 154494304 154494479 -5105304 - MTC-int LTR MaLR -142 1116 924 7 1763 1030 156 53 65 chr3 154494490 154494737 -5105046 - MTC LTR MaLR -177 244 1 7 1763 324 0 0 0 chr3 154495630 154495666 -5104117 + (TAAA)n Simple_repeat Simple_repeat 3 38 0 7 1763 389 20 20 0 chr3 154495686 154495736 -5104047 + (TG)n Simple_repeat Simple_repeat 1 51 0 7 1763 291 372 52 17 chr3 154495736 154495851 -5103932 - B3A SINE B2 -79 119 1 7 1763 271 359 0 28 chr3 154497325 154497431 -5102352 + L4 LINE RTE 1711 1813 -216 7 1763 252 0 0 0 chr3 154498460 154498488 -5101295 + (TG)n Simple_repeat Simple_repeat 2 29 0 7 1763 329 326 26 78 chr3 154499842 154499995 -5099788 - MLT1E LTR MaLR -12 641 497 7 1763 22 56 0 0 chr3 154501651 154501687 -5098096 + AT_rich Low_complexity Low_complexity 1 36 0 1 1763 264 130 0 0 chr3 154501765 154501811 -5097972 + (TC)n Simple_repeat Simple_repeat 1 46 0 2 1763 417 20 0 0 chr3 154503096 154503146 -5096637 + (TC)n Simple_repeat Simple_repeat 2 51 0 3 1763 699 90 0 0 chr3 154504397 154504497 -5095286 + (GGAA)n Simple_repeat Simple_repeat 3 102 0 4 1763 2583 70 0 29 chr3 154505577 154505928 -5093855 - L1_Mus1 LINE L1 0 6567 6227 5 1763 393 271 65 0 chr3 154506594 154506701 -5093082 + RSINE1 SINE B4 11 124 -41 6 1763 228 35 0 0 chr3 154506739 154506768 -5093015 + (TG)n Simple_repeat Simple_repeat 2 30 0 7 1763 206 234 0 0 chr3 154507262 154507327 -5092456 + (TTTG)n Simple_repeat Simple_repeat 1 65 0 8 1763 189 74 0 0 chr3 154507332 154507359 -5092424 + (TCTG)n Simple_repeat Simple_repeat 2 28 0 9 1763 598 325 65 16 chr3 154507668 154507915 -5091868 - B4A SINE B4 -10 282 24 1 1763 585 129 0 0 chr3 154508736 154508829 -5090954 + (GGGA)n Simple_repeat Simple_repeat 1 93 0 1 1763 345 100 0 0 chr3 154508836 154508886 -5090897 + (TA)n Simple_repeat Simple_repeat 1 50 0 1 1763 264 333 19 25 chr3 154509002 154509162 -5090621 + (TATATG)n Simple_repeat Simple_repeat 6 164 0 1 1763 346 295 11 11 chr3 154509101 154509279 -5090504 + (TG)n Simple_repeat Simple_repeat 1 178 0 1 1763 326 237 23 17 chr3 154509380 154510124 -5089659 + (TG)n Simple_repeat Simple_repeat 1 748 0 1 1763 242 279 0 7 chr3 154516853 154516923 -5082860 + B1_Mur1 SINE Alu 56 123 -26 1 1763 198 0 0 0 chr3 154516934 154516956 -5082827 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 1 1763 21 36 0 0 chr3 154517518 154517546 -5082237 + AT_rich Low_complexity Low_complexity 1 28 0 1 1763 1281 93 0 0 chr3 154517928 154518218 -5081565 + (CA)n Simple_repeat Simple_repeat 1 290 0 1 1763 180 217 111 78 chr3 154518409 154518499 -5081284 - L2a LINE L2 -1 3425 3333 2 1763 618 206 137 0 chr3 154519902 154520033 -5079750 + RSINE1 SINE B4 4 152 -13 2 1763 266 42 0 94 chr3 154520388 154520441 -5079342 + (T)n Simple_repeat Simple_repeat 1 48 0 2 1763 363 23 0 0 chr3 154520479 154520523 -5079260 + (ATTG)n Simple_repeat Simple_repeat 2 45 0 2 1763 733 131 168 0 chr3 154520523 154520660 -5079123 - B2_Mm1t SINE B2 -33 160 1 2 1763 243 0 0 0 chr3 154521035 154521062 -5078721 + (TC)n Simple_repeat Simple_repeat 2 28 0 2 1763 4474 154 28 24 chr3 154521065 154521875 -5077908 - Lx4B LINE L1 -4 7054 6241 2 1763 274 273 0 15 chr3 154524016 154524083 -5075700 + RSINE1 SINE B4 2 67 -98 2 1763 228 35 0 0 chr3 154524084 154524113 -5075670 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 2 1763 799 296 18 65 chr3 154525636 154525911 -5073872 + B4A SINE B4 15 276 -16 2 1763 669 93 0 0 chr3 154525916 154526023 -5073760 + (CA)n Simple_repeat Simple_repeat 2 108 0 3 1763 682 325 117 28 chr3 154527534 154527927 -5071856 + MLT2B2 LTR ERVL 24 451 -64 3 1763 216 86 0 0 chr3 154528024 154528059 -5071724 + (TG)n Simple_repeat Simple_repeat 2 36 0 3 1763 306 0 0 0 chr3 154528223 154528257 -5071526 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 3 1763 22 0 0 0 chr3 154529341 154529363 -5070420 + AT_rich Low_complexity Low_complexity 1 22 0 3 1763 1351 269 229 13 chr3 154530003 154530625 -5069158 - L1MA4 LINE L1 -174 6126 5363 3 1763 379 190 52 14 chr3 154530864 154531159 -5068624 + (CCAA)n Simple_repeat Simple_repeat 1 306 0 3 1763 404 330 104 30 chr3 154531384 154531712 -5068071 + Lx9 LINE L1 7292 7643 -1 3 1763 1326 69 6 0 chr3 154532150 154532325 -5067458 - L1_Mus2 LINE L1 -1 6565 6390 3 1763 233 341 68 0 chr3 154533193 154533369 -5066414 + L1ME1 LINE L1 5956 6143 -36 3 1764 298 236 37 86 chr3 154534090 154534233 -5065550 + B2_Mm2 SINE B2 1 130 -86 4 1764 828 65 8 16 chr3 154536611 154536694 -5063089 + (TC)n Simple_repeat Simple_repeat 1 83 0 4 1764 1155 8 0 0 chr3 154536694 154536826 -5062957 + (TTTCC)n Simple_repeat Simple_repeat 2 133 0 4 1764 828 65 8 16 chr3 154536826 154536868 -5062915 + (TC)n Simple_repeat Simple_repeat 1 42 0 4 1764 1311 74 0 0 chr3 154536873 154537049 -5062734 + (TCTCCC)n Simple_repeat Simple_repeat 4 179 0 4 1764 231 36 0 0 chr3 154537049 154537076 -5062707 + (TTTC)n Simple_repeat Simple_repeat 1 28 0 4 1764 490 321 147 0 chr3 154537529 154537719 -5062064 - B4A SINE B4 -12 280 63 4 1764 239 274 110 0 chr3 154538838 154538911 -5060872 + RSINE1 SINE B4 20 100 -65 4 1764 496 266 134 11 chr3 154539520 154539706 -5060077 + Lx9 LINE L1 7053 7261 -383 4 1764 1156 75 0 0 chr3 154540321 154540467 -5059316 - B1_Mus2 SINE Alu -1 146 1 4 1764 744 12 0 0 chr3 154541561 154541646 -5058137 + (TG)n Simple_repeat Simple_repeat 1 85 0 5 1764 324 0 0 0 chr3 154542925 154542961 -5056822 + (TG)n Simple_repeat Simple_repeat 1 36 0 5 1764 471 48 0 0 chr3 154542961 154543022 -5056761 + (GA)n Simple_repeat Simple_repeat 1 62 0 5 1764 423 0 0 0 chr3 154544191 154544238 -5055545 + (CA)n Simple_repeat Simple_repeat 1 47 0 5 1764 652 240 304 11 chr3 154544428 154544714 -5055069 + ORR1D2 LTR MaLR 1 370 0 5 1764 604 283 41 136 chr3 154546400 154546595 -5053188 + MTD LTR MaLR 1 197 -222 5 1764 347 0 23 0 chr3 154546595 154546638 -5053145 + (CAA)n Simple_repeat Simple_repeat 2 45 0 5 1764 604 283 41 136 chr3 154546638 154546855 -5052928 + MTD LTR MaLR 198 374 -45 5 1764 22 0 0 0 chr3 154548956 154548978 -5050805 + AT_rich Low_complexity Low_complexity 1 22 0 5 1764 445 312 32 0 chr3 154548987 154549112 -5050671 - ID_B1 SINE B4 -11 213 85 5 1764 185 0 40 0 chr3 154549719 154549744 -5050039 + (TTTTTG)n Simple_repeat Simple_repeat 4 29 0 5 1764 562 234 78 0 chr3 154550326 154550480 -5049303 - B3 SINE B2 -46 170 5 6 1764 2511 124 27 2 chr3 154550849 154551258 -5048525 + L1_Mur2 LINE L1 4938 5391 -921 6 1764 536 284 28 0 chr3 154552461 154552602 -5047181 + RSINE1 SINE B4 1 145 -20 6 1764 404 350 11 32 chr3 154552668 154552854 -5046929 - B3A SINE B2 0 198 17 6 1764 1271 223 111 26 chr3 154553565 154553654 -5046129 + ORR1D1 LTR MaLR 1 92 -282 6 1764 1509 198 126 0 chr3 154553654 154553988 -5045795 + ORR1C1 LTR MaLR 1 376 -2 6 1764 1271 223 111 26 chr3 154553988 154554239 -5045544 + ORR1D1 LTR MaLR 93 370 -4 6 1764 530 307 27 33 chr3 154554917 154555122 -5044661 + Lx8 LINE L1 6748 7103 -541 6 1764 471 18 0 0 chr3 154555122 154555178 -5044605 + (TC)n Simple_repeat Simple_repeat 1 56 0 6 1764 594 68 0 0 chr3 154555178 154555265 -5044518 + (CA)n Simple_repeat Simple_repeat 1 88 0 6 1764 1123 262 60 6 chr3 154555265 154555614 -5044169 + Lx8 LINE L1 6972 7339 -134 6 1764 28 29 0 0 chr3 154555717 154555752 -5044031 + AT_rich Low_complexity Low_complexity 1 35 0 6 1764 396 0 0 0 chr3 154556100 154556144 -5043639 + (TTTTA)n Simple_repeat Simple_repeat 3 46 0 7 1764 392 266 29 86 chr3 154556163 154556303 -5043480 - ORR1E LTR MaLR 0 379 248 7 1764 443 224 49 17 chr3 154556532 154556653 -5043130 - ORR1E LTR MaLR -244 126 1 7 1764 180 0 0 0 chr3 154557609 154557629 -5042154 + (CA)n Simple_repeat Simple_repeat 2 21 0 7 1764 209 77 51 0 chr3 154557639 154557678 -5042105 + (TCTCTG)n Simple_repeat Simple_repeat 4 44 0 7 1764 4909 75 6 7 chr3 154558628 154559279 -5040504 - L1_Mus1 LINE L1 -239 6328 5706 7 1764 1316 106 17 8 chr3 154559268 154559475 -5040308 + L1_Mus1 LINE L1 6390 6653 -1 7 1764 251 375 66 33 chr3 154559554 154559736 -5040047 - L2 LINE L2 -635 2784 2597 7 1764 606 259 102 11 chr3 154559845 154560021 -5039762 - B3 SINE B2 -24 192 1 7 1764 243 0 0 0 chr3 154560022 154560049 -5039734 + (TTTTA)n Simple_repeat Simple_repeat 4 30 0 7 1764 332 276 191 15 chr3 154560082 154560218 -5039565 - RSINE1 SINE B4 -1 164 5 7 1764 345 47 0 0 chr3 154562381 154562424 -5037359 + (CATA)n Simple_repeat Simple_repeat 1 43 0 7 1764 330 387 47 23 chr3 154562444 154562788 -5036995 + ORR1D2 LTR MaLR 1 352 -18 8 1764 25604 153 24 19 chr3 154563346 154568442 -5031341 + Lx5 LINE L1 896 6025 -1025 8 1764 2489 220 4 29 chr3 154568436 154568983 -5030800 + Lx5 LINE L1 6474 7006 -44 8 1764 752 306 135 54 chr3 154569039 154569388 -5030395 - MTEa LTR MaLR 0 379 3 8 1764 680 271 206 41 chr3 154569469 154569785 -5029998 - ORR1D2 LTR MaLR 0 370 3 8 1764 260 314 94 24 chr3 154571436 154571563 -5028220 - B1F2 SINE Alu -1 148 13 8 1764 373 318 81 32 chr3 154572103 154572288 -5027495 - B4 SINE B4 -1 291 98 8 1764 1158 110 0 0 chr3 154572597 154572770 -5027013 + (TTTC)n Simple_repeat Simple_repeat 2 174 0 8 1764 3595 73 0 13 chr3 154572779 154573267 -5026516 - L1Md_F2 LINE L1 0 6582 6121 8 1764 250 241 36 12 chr3 154573874 154573958 -5025825 + (TATATG)n Simple_repeat Simple_repeat 1 86 0 8 1764 1026 253 119 35 chr3 154575994 154576313 -5023470 - MTD LTR MaLR -56 363 18 8 1764 353 20 41 0 chr3 154578245 154578294 -5021489 + (TCTG)n Simple_repeat Simple_repeat 2 52 0 9 1764 743 86 29 112 chr3 154578999 154579169 -5020614 - RMER17B LTR ERVK -495 463 308 9 1764 567 278 111 67 chr3 154580634 154581004 -5018779 - L1MA7 LINE L1 -361 5939 5559 9 1764 1630 302 106 11 chr3 154581007 154581826 -5017957 + L1M2 LINE L1 3993 4889 -1254 9 1764 3800 48 9 7 chr3 154582097 154582555 -5017228 + L1Md_F2 LINE L1 6123 6581 -1 9 1764 640 281 122 69 chr3 154582556 154582851 -5016932 + ORR1D2 LTR MaLR 34 378 -1 9 1764 929 256 38 25 chr3 154584995 154585235 -5014548 - B4 SINE B4 -48 244 2 9 1764 275 214 24 0 chr3 154586509 154586593 -5013190 + (TATATG)n Simple_repeat Simple_repeat 4 89 0 9 1764 21 0 0 0 chr3 154586840 154586861 -5012922 + AT_rich Low_complexity Low_complexity 1 21 0 9 1764 342 0 0 0 chr3 154587523 154587561 -5012222 + (CTAA)n Simple_repeat Simple_repeat 3 40 0 9 1764 694 277 75 53 chr3 154588844 154589164 -5010619 + RMER5 LTR ERV1 208 534 0 1 1764 278 272 261 33 chr3 154589947 154590062 -5009721 + RSINE1 SINE B4 6 146 -19 1 1764 351 226 88 0 chr3 154592199 154592301 -5007482 + L1_Rod LINE L1 5682 5792 -55 1 1764 1306 113 23 0 chr3 154592404 154592581 -5007202 - B2_Mm2 SINE B2 -14 181 1 1 1764 4868 108 12 12 chr3 154593446 154594120 -5005663 + Lx2 LINE L1 6324 6997 0 1 1764 1724 40 0 0 chr3 154594651 154594850 -5004933 + L1Md_F3 LINE L1 5387 5585 -298 1 1764 9238 22 1 0 chr3 154594851 154595846 -5003937 + L1Md_F3 LINE L1 5587 6582 -2 1 1764 466 260 81 14 chr3 154596591 154596739 -5003044 - MTD LTR MaLR -252 167 10 1 1764 4208 143 62 25 chr3 154597647 154598376 -5001407 + RMER6A LTR ERVK 1 756 0 1 1764 285 209 0 0 chr3 154599415 154599482 -5000301 + (TG)n Simple_repeat Simple_repeat 2 68 0 1 1764 1837 61 4 0 chr3 154600311 154600542 -4999241 - L1Md_F2 LINE L1 -248 6334 6103 1 1764 1740 78 17 25 chr3 154600542 154600778 -4999005 + L1Md_F2 LINE L1 6347 6580 -2 1 1764 198 0 0 0 chr3 154601230 154601252 -4998531 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 1 1764 1303 34 7 0 chr3 154601263 154601409 -4998374 - B1_Mm SINE Alu 0 147 1 1 1764 21 57 0 0 chr3 154602032 154602067 -4997716 + AT_rich Low_complexity Low_complexity 1 35 0 1 1764 22 56 0 0 chr3 154603649 154603685 -4996098 + AT_rich Low_complexity Low_complexity 1 36 0 1 1764 1213 63 0 0 chr3 154606077 154606219 -4993564 - B1_Mus2 SINE Alu -5 142 1 1 1764 344 0 0 67 chr3 154606705 154606765 -4993018 + (CAAAA)n Simple_repeat Simple_repeat 2 57 0 1 1764 877 298 53 23 chr3 154606769 154607202 -4992581 + L1_Mur3 LINE L1 46 491 -7221 1 1764 1530 228 54 21 chr3 154607449 154607821 -4991962 + ORR1C2 LTR MaLR 1 384 0 1 1764 618 136 0 0 chr3 154609748 154609866 -4989917 + (TG)n Simple_repeat Simple_repeat 2 119 0 1 1764 512 308 62 111 chr3 154609867 154610174 -4989609 - B4 SINE B4 0 292 1 1 1764 189 333 52 37 chr3 154610858 154610992 -4988791 + L2b LINE L2 3239 3374 -1 1 1764 729 317 63 21 chr3 154611357 154611644 -4988139 + MTD LTR MaLR 1 299 -120 1 1764 618 249 76 22 chr3 154611644 154611829 -4987954 - MTD-int LTR MaLR -1063 195 1 1 1764 268 307 45 0 chr3 154611842 154611930 -4987853 - MTD LTR MaLR -14 405 314 1 1764 289 272 21 21 chr3 154611932 154612026 -4987757 - MTC LTR MaLR -315 106 13 1 1764 432 0 0 0 chr3 154613037 154613085 -4986698 + (TG)n Simple_repeat Simple_repeat 2 49 0 1 1764 497 283 14 7 chr3 154613939 154614085 -4985698 + B1F SINE Alu 2 148 -1 1 1764 24 53 0 0 chr3 154614217 154614255 -4985528 + AT_rich Low_complexity Low_complexity 1 38 0 1 1764 569 266 14 20 chr3 154615718 154615864 -4983919 + RMER30 DNA MER1_type 19 163 -39 1 1764 265 364 72 17 chr3 154616797 154617032 -4982751 + L1M5 LINE L1 5647 5894 -279 1 1764 2997 287 120 23 chr3 154617539 154618668 -4981115 + Lx7 LINE L1 6036 7273 -423 1 1764 1202 288 37 11 chr3 154618670 154619046 -4980737 + RMER5 LTR ERV1 145 530 -4 1 1764 728 178 17 9 chr3 154619107 154619537 -4980246 + (CATA)n Simple_repeat Simple_repeat 1 433 0 1 1764 202 216 0 0 chr3 154620063 154620100 -4979683 + GA-rich Low_complexity Low_complexity 2 38 0 1 1764 447 358 116 34 chr3 154620778 154621131 -4978652 + MLT1B LTR MaLR 1 382 -8 1 1764 450 183 0 0 chr3 154621162 154621282 -4978501 + GA-rich Low_complexity Low_complexity 2 121 0 1 1764 652 302 82 61 chr3 154621984 154622312 -4977471 - MTEb LTR MaLR -39 340 6 1 1764 268 311 19 9 chr3 154622998 154623054 -4976729 + (TATATG)n Simple_repeat Simple_repeat 4 59 0 1 1764 255 125 0 0 chr3 154623054 154623094 -4976689 + (TATG)n Simple_repeat Simple_repeat 4 43 0 1 1764 268 311 19 9 chr3 154623094 154623144 -4976639 + (TATATG)n Simple_repeat Simple_repeat 6 57 0 1 1764 312 241 0 0 chr3 154623148 154623227 -4976556 + (CA)n Simple_repeat Simple_repeat 2 80 0 1 1764 1042 276 47 58 chr3 154623230 154623611 -4976172 + MTEa LTR MaLR 1 377 -2 1 1764 354 74 0 0 chr3 154623752 154623806 -4975977 + (A)n Simple_repeat Simple_repeat 1 54 0 1 1764 476 312 8 31 chr3 154625426 154625555 -4974228 + RSINE1 SINE B4 4 129 -36 1 1764 2355 227 44 91 chr3 154626082 154626717 -4973066 + RMER19C LTR ERVK 1 605 -6 1 1764 988 325 62 14 chr3 154627052 154627423 -4972360 - MTD LTR MaLR -30 389 1 1 1764 278 338 66 29 chr3 154628719 154628856 -4970927 + B1F1 SINE Alu 1 142 -7 1 1764 222 250 0 55 chr3 154628883 154628938 -4970845 + ID SINE ID 32 83 -141 1 1764 330 265 159 119 chr3 154629344 154629520 -4970263 - B3A SINE B2 -15 183 1 1 1764 21 0 0 0 chr3 154630180 154630201 -4969582 + AT_rich Low_complexity Low_complexity 1 21 0 1 1764 39 22 0 0 chr3 154631070 154631116 -4968667 + AT_rich Low_complexity Low_complexity 1 46 0 1 1764 263 279 0 0 chr3 154631263 154631324 -4968459 + L1M5 LINE L1 5623 5683 -479 1 1764 449 267 31 62 chr3 154632361 154632489 -4967294 + ID_B1 SINE B4 91 214 -10 1 1764 237 43 42 21 chr3 154632568 154632616 -4967167 + (CAAA)n Simple_repeat Simple_repeat 1 49 0 1 1764 487 236 39 173 chr3 154632722 154632901 -4966882 - MTE2a LTR MaLR -216 163 9 1 1764 246 338 0 25 chr3 154633026 154633105 -4966678 - BC1_Mm scRNA scRNA -73 79 3 1 1764 457 307 131 22 chr3 154633289 154633535 -4966248 + MIR SINE MIR 18 259 -9 1 1764 327 25 0 0 chr3 154634471 154634511 -4965272 + (T)n Simple_repeat Simple_repeat 1 40 0 1 1764 291 54 0 0 chr3 154634963 154635000 -4964783 + (TG)n Simple_repeat Simple_repeat 2 38 0 1 1764 33877 92 13 10 chr3 154635127 154641686 -4958097 - L1Md_F2 LINE L1 0 6582 98 1 1764 546 93 0 0 chr3 154642423 154642509 -4957274 + (TG)n Simple_repeat Simple_repeat 1 86 0 1 1764 226 361 141 27 chr3 154642857 154643113 -4956670 + ORR1D2 LTR MaLR 21 305 -65 1 1764 217 146 36 18 chr3 154643154 154643210 -4956573 + T-rich Low_complexity Low_complexity 3 59 0 1 1764 332 311 82 33 chr3 154643288 154643471 -4956312 - MER34A1 LTR ERV1 -395 192 1 1 1764 7524 117 6 6 chr3 154643968 154645209 -4954574 - Lx LINE L1 -8 6646 5407 1 1764 3427 104 12 18 chr3 154645209 154645709 -4954074 + L1_Mus4 LINE L1 6132 6628 -8 1 1764 771 157 9 2 chr3 154645715 154645868 -4953915 + L1_Mur2 LINE L1 5281 5460 -837 1 1764 358 334 12 2 chr3 154646376 154646526 -4953257 - MIRb SINE MIR -102 166 15 1 1764 340 321 0 0 chr3 154647715 154647799 -4951984 + PB1D7 SINE Alu 35 118 -2 1 1764 2109 211 36 15 chr3 154649038 154649670 -4950113 - RLTR31_Mur LTR ERVK 0 553 1 1 1764 5437 102 26 1 chr3 154649725 154650467 -4949316 - L1_Mus4 LINE L1 -7 6629 5870 1 1764 2259 111 77 6 chr3 154650483 154650845 -4948938 - L1_Mm LINE L1 -1259 4624 4237 1 1764 455 321 62 38 chr3 154650845 154651136 -4948647 + MER54A LTR ERVL 97 394 -507 1 1764 315 289 31 10 chr3 154651148 154651246 -4948537 + MER54A LTR ERVL 631 730 -171 1 1764 321 233 0 0 chr3 154651279 154651339 -4948444 + ID4_ SINE ID 3 62 -21 1 1764 202 206 16 16 chr3 154651347 154651411 -4948372 + GA-rich Low_complexity Low_complexity 2 65 0 1 1764 1372 121 78 12 chr3 154651439 154651682 -4948101 - MTC LTR MaLR -162 259 1 1 1764 805 205 12 12 chr3 154651827 154652000 -4947783 + MTB_Mm LTR MaLR 235 407 0 1 1764 798 295 81 25 chr3 154652556 154652876 -4946907 + RCHARR1 DNA MER1_type 4 341 -633 1 1764 894 264 13 0 chr3 154652962 154653193 -4946590 + RCHARR1 DNA MER1_type 741 974 0 1 1764 236 259 17 0 chr3 154653483 154653541 -4946242 + (TG)n Simple_repeat Simple_repeat 2 60 0 1 1764 471 35 0 0 chr3 154653741 154653798 -4945985 + (TC)n Simple_repeat Simple_repeat 2 58 0 1 1764 401 326 125 45 chr3 154655812 154656040 -4943743 + L1MEc LINE L1 142 381 -6019 1 1764 3249 182 68 26 chr3 154656040 154656701 -4943082 - RMER6C LTR ERVK 0 690 2 1 1764 401 326 125 45 chr3 154656701 154657199 -4942584 + L1MEc LINE L1 382 926 -5474 1 1764 2160 123 6 0 chr3 154657291 154657607 -4942176 - ORR1A3 LTR MaLR -8 318 1 1 1764 24 0 0 0 chr3 154659189 154659213 -4940570 + AT_rich Low_complexity Low_complexity 1 24 0 1 1764 808 291 56 15 chr3 154660098 154660367 -4939416 + MTEb LTR MaLR 99 378 -1 1 1764 2055 202 65 10 chr3 154660403 154660802 -4938981 - MTC LTR MaLR 0 421 1 1 1764 258 336 59 0 chr3 154661071 154661190 -4938593 + MER99 DNA hAT? 7 132 -699 1 1764 7973 99 1 3 chr3 154661410 154662514 -4937269 - L1_Mus2 LINE L1 -309 5574 4473 1 1764 7766 68 1 1 chr3 154662511 154663482 -4936301 + L1_Mus2 LINE L1 5592 6562 -4 1 1764 220 234 0 0 chr3 154663799 154663846 -4935937 + (TA)n Simple_repeat Simple_repeat 1 47 0 1 1764 297 218 0 0 chr3 154663872 154663950 -4935833 + (CATA)n Simple_repeat Simple_repeat 2 79 0 1 1764 275 196 0 20 chr3 154663940 154664039 -4935744 + (TATATG)n Simple_repeat Simple_repeat 5 101 0 1 1764 576 29 0 0 chr3 154664056 154664126 -4935657 + (GA)n Simple_repeat Simple_repeat 2 71 0 1 1764 248 121 0 33 chr3 154664634 154664694 -4935089 + A-rich Low_complexity Low_complexity 2 59 0 1 1765 22 0 0 0 chr3 154665624 154665646 -4934137 + AT_rich Low_complexity Low_complexity 1 22 0 1 1765 351 0 0 0 chr3 154667198 154667237 -4932546 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 1765 441 0 0 0 chr3 154667237 154667285 -4932498 + (GA)n Simple_repeat Simple_repeat 2 50 0 1 1765 885 50 8 0 chr3 154667646 154667765 -4932018 + L1Md_A LINE L1 6463 6582 0 1 1765 11942 94 9 22 chr3 154667778 154670284 -4929499 + L1_Mus1 LINE L1 4106 6567 0 1 1765 1403 87 16 26 chr3 154670303 154670493 -4929290 + B2_Mm2 SINE B2 1 188 -7 1 1765 296 328 40 30 chr3 154672860 154673094 -4926689 + MLT1G-int LTR MaLR 1117 1328 -59 1 1765 702 327 88 0 chr3 154673116 154673367 -4926416 + MLT1G LTR MaLR 3 275 -316 1 1765 445 246 25 0 chr3 154673371 154673489 -4926294 + L1M2 LINE L1 5657 5777 -523 1 1765 270 0 0 0 chr3 154673700 154673730 -4926053 + (TG)n Simple_repeat Simple_repeat 1 30 0 2 1765 357 320 84 13 chr3 154673745 154673900 -4925883 - B3A SINE B2 -18 180 15 2 1765 1957 61 4 0 chr3 154673977 154674222 -4925561 - L1_Mus1 LINE L1 -699 5868 5623 2 1765 5764 61 25 0 chr3 154674222 154674907 -4924876 + L1_Mus1 LINE L1 5866 6567 0 2 1765 1108 97 0 7 chr3 154674917 154675052 -4924731 + B1_Mm SINE Alu 3 137 -10 2 1765 260 27 27 0 chr3 154675052 154675089 -4924694 + (CAA)n Simple_repeat Simple_repeat 2 39 0 2 1765 212 219 30 30 chr3 154675099 154675198 -4924585 + (CAAA)n Simple_repeat Simple_repeat 2 100 0 2 1765 4618 73 0 11 chr3 154675266 154675836 -4923947 - L1Md_F2 LINE L1 0 6582 6019 2 1765 225 94 0 0 chr3 154676423 154676455 -4923328 + (TG)n Simple_repeat Simple_repeat 2 33 0 2 1765 240 269 46 37 chr3 154676704 154676812 -4922971 + L1M5 LINE L1 2824 2932 -3214 2 1765 481 258 15 42 chr3 154676859 154677020 -4922763 - B3A SINE B2 -49 167 1 2 1765 34 24 0 0 chr3 154677023 154677064 -4922719 + AT_rich Low_complexity Low_complexity 1 41 0 2 1765 7416 45 2 1 chr3 154677064 154677953 -4921830 - L1Md_F2 LINE L1 0 6582 5693 2 1765 1219 310 73 26 chr3 154677960 154678715 -4921068 - L1_Rod LINE L1 -438 5409 4620 2 1765 27 49 0 0 chr3 154680122 154680163 -4919620 + AT_rich Low_complexity Low_complexity 1 41 0 2 1765 435 258 78 32 chr3 154680227 154680403 -4919380 - L1M3 LINE L1 -776 5370 5186 2 1765 233 202 25 25 chr3 154680435 154680516 -4919267 - L1M3 LINE L1 -1086 5057 4977 2 1765 870 193 21 0 chr3 154680554 154680699 -4919084 - B1_Mus1 SINE Alu 0 148 1 2 1765 280 277 204 22 chr3 154680716 154680897 -4918886 - B3 SINE B2 -1 215 2 2 1765 308 297 117 62 chr3 154681149 154681314 -4918469 - L1M3e LINE L1 -4546 2491 2322 2 1765 842 94 8 16 chr3 154681314 154681443 -4918340 - L1Md_F2 LINE L1 -13 6569 6442 2 1765 365 330 100 54 chr3 154681443 154682089 -4917694 - L1M3e LINE L1 -4716 2321 1635 2 1765 522 289 20 57 chr3 154682102 154682348 -4917435 - L1M3e LINE L1 -6793 237 1 2 1765 391 295 35 9 chr3 154682590 154682703 -4917080 + PB1D10 SINE Alu 1 116 -1 2 1765 251 73 49 0 chr3 154684206 154684247 -4915536 + (TATG)n Simple_repeat Simple_repeat 4 46 0 2 1765 465 19 0 0 chr3 154685126 154685180 -4914603 + (TTTA)n Simple_repeat Simple_repeat 4 57 0 2 1765 180 125 0 0 chr3 154685181 154685213 -4914570 + (T)n Simple_repeat Simple_repeat 1 32 0 2 1765 1087 101 0 26 chr3 154685250 154685402 -4914381 - B1_Mus1 SINE Alu 0 148 1 2 1765 532 309 38 92 chr3 154685576 154685890 -4913893 + MLT1B LTR MaLR 1 297 -93 2 1765 251 344 0 0 chr3 154686026 154686122 -4913661 + L1MB7 LINE L1 6010 6105 -79 2 1765 284 102 0 20 chr3 154686461 154686511 -4913272 + (GGA)n Simple_repeat Simple_repeat 3 51 0 2 1765 280 275 4 4 chr3 154687560 154688014 -4911769 + (TG)n Simple_repeat Simple_repeat 1 454 0 2 1765 1897 188 147 20 chr3 154688274 154688456 -4911327 + RMER5 LTR ERV1 1 206 -328 2 1765 1455 152 9 0 chr3 154688456 154688679 -4911104 - URR1B DNA MER1_type 0 225 1 2 1765 1897 188 147 20 chr3 154688679 154688951 -4910832 + RMER5 LTR ERV1 207 513 -21 2 1765 2640 113 30 0 chr3 154688957 154689321 -4910462 + Lx3_Mus LINE L1 6626 7000 -9 2 1765 296 319 145 56 chr3 154690465 154690714 -4909069 - MER44A DNA MER2_type -67 272 2 2 1765 411 205 170 22 chr3 154690889 154691036 -4908747 - B3 SINE B2 -23 172 2 2 1765 200 34 0 33 chr3 154691073 154691103 -4908680 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 2 1765 201 382 44 0 chr3 154692506 154692642 -4907141 + L2a LINE L2 3273 3414 -12 2 1765 231 296 19 0 chr3 154692777 154692831 -4906952 - ID4_ SINE ID -20 63 9 2 1765 181 298 53 0 chr3 154692840 154692897 -4906886 - MIR SINE MIR -114 148 89 2 1765 1336 82 48 21 chr3 154693646 154693834 -4905949 - B2_Mm2 SINE B2 -1 194 2 2 1765 240 224 0 0 chr3 154694180 154694229 -4905554 + PB1D10 SINE Alu 4 52 -65 2 1765 197 108 27 0 chr3 154694242 154694279 -4905504 + (TAAA)n Simple_repeat Simple_repeat 3 40 0 2 1765 1217 259 138 0 chr3 154694612 154694937 -4904846 - MTD LTR MaLR -37 382 13 2 1765 531 56 0 0 chr3 154694978 154695049 -4904734 + (CCAA)n Simple_repeat Simple_repeat 2 72 0 2 1765 180 403 14 0 chr3 154695376 154695448 -4904335 - MIRb SINE MIR -192 76 4 2 1765 222 37 0 0 chr3 154697349 154697376 -4902407 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2 1765 1104 236 95 36 chr3 154699412 154699785 -4899998 + MTE2a LTR MaLR 2 379 0 2 1765 225 180 0 20 chr3 154701085 154701099 -4898684 + A-rich Low_complexity Low_complexity 5 18 0 2 1765 1260 62 0 0 chr3 154701099 154701244 -4898539 + B1_Mus2 SINE Alu 1 145 -2 2 1765 225 180 0 20 chr3 154701244 154701280 -4898503 + A-rich Low_complexity Low_complexity 19 53 0 2 1765 24 0 0 0 chr3 154701756 154701780 -4898003 + AT_rich Low_complexity Low_complexity 1 24 0 2 1765 204 179 0 0 chr3 154701895 154701934 -4897849 + GA-rich Low_complexity Low_complexity 3 41 0 2 1765 433 312 50 39 chr3 154702842 154703022 -4896761 - B3A SINE B2 0 198 17 2 1765 384 256 92 8 chr3 154703032 154703162 -4896621 - RMER5 LTR ERV1 -179 355 215 2 1765 507 245 64 38 chr3 154703190 154703347 -4896436 - RMER5 LTR ERV1 -80 454 294 2 1765 660 276 48 44 chr3 154703475 154703702 -4896081 - RMER5 LTR ERV1 -256 278 51 2 1765 306 256 43 22 chr3 154703749 154703841 -4895942 - RSINE1 SINE B4 -40 125 32 2 1765 1832 215 51 8 chr3 154704552 154704941 -4894842 + MTD LTR MaLR 1 406 -13 2 1765 274 183 19 37 chr3 154705658 154705766 -4894017 + CT-rich Low_complexity Low_complexity 2 107 0 2 1765 977 174 384 40 chr3 154706445 154706718 -4893065 - ORR1B2 LTR MaLR 0 367 1 2 1765 5957 202 61 35 chr3 154706718 154708120 -4891663 - ORR1B2-int LTR MaLR 0 1509 71 2 1765 2329 133 17 0 chr3 154708156 154708509 -4891274 - ORR1B2 LTR MaLR -8 359 1 2 1765 8003 141 4 9 chr3 154710855 154712084 -4887699 + Lx2 LINE L1 5774 6996 -1 2 1765 23 78 0 0 chr3 154712104 154712155 -4887628 + AT_rich Low_complexity Low_complexity 1 51 0 2 1765 3864 61 9 2 chr3 154712262 154712724 -4887059 - L1Md_F3 LINE L1 -12 6572 6108 2 1765 13809 39 7 1 chr3 154712724 154714364 -4885419 + L1_Mm LINE L1 4042 5691 -192 2 1765 381 58 0 0 chr3 154714800 154714852 -4884931 + (TG)n Simple_repeat Simple_repeat 1 52 0 2 1765 445 331 26 7 chr3 154714864 154715016 -4884767 - RSINE1 SINE B4 -6 159 5 2 1765 1874 204 48 31 chr3 154716105 154716216 -4883567 + MTC LTR MaLR 1 111 -310 2 1765 1247 199 18 5 chr3 154716216 154716438 -4883345 - URR1B DNA MER1_type 0 225 1 2 1765 1874 204 48 31 chr3 154716438 154716740 -4883043 + MTC LTR MaLR 112 421 0 2 1765 203 61 30 0 chr3 154716888 154716921 -4882862 + (TTG)n Simple_repeat Simple_repeat 2 35 0 2 1765 495 0 0 0 chr3 154718769 154718824 -4880959 + (CA)n Simple_repeat Simple_repeat 1 55 0 2 1765 468 313 38 17 chr3 154720109 154720346 -4879437 - L1MA5 LINE L1 -425 5875 5634 2 1765 718 281 89 26 chr3 154720363 154720940 -4878843 - L1MA5 LINE L1 -367 5519 4914 2 1765 999 253 38 72 chr3 154721124 154721295 -4878488 + MTEa LTR MaLR 20 195 -184 2 1765 612 27 0 0 chr3 154721295 154721369 -4878414 + (TC)n Simple_repeat Simple_repeat 2 75 0 2 1765 999 253 38 72 chr3 154721369 154721516 -4878267 + MTEa LTR MaLR 196 327 -52 2 1765 210 143 0 0 chr3 154721618 154721653 -4878130 + (TCC)n Simple_repeat Simple_repeat 1 35 0 2 1765 1019 283 11 0 chr3 154721721 154721997 -4877786 - Lx7 LINE L1 -272 7424 7146 2 1765 230 289 103 0 chr3 154722011 154722108 -4877675 + L1MC1 LINE L1 5848 5954 -379 2 1765 356 325 6 78 chr3 154722491 154722658 -4877125 + RSINE1 SINE B4 3 157 -8 2 1765 408 238 0 0 chr3 154722664 154722790 -4876993 + (CA)n Simple_repeat Simple_repeat 1 126 0 2 1765 572 237 0 5 chr3 154722819 154723270 -4876513 + (CA)n Simple_repeat Simple_repeat 1 448 0 2 1765 337 281 129 64 chr3 154723925 154724006 -4875777 + B4 SINE B4 11 192 -100 2 1765 521 167 89 0 chr3 154724006 154724096 -4875687 + B1F2 SINE Alu 6 103 -46 2 1765 3702 115 155 44 chr3 154724651 154725051 -4874732 - RMER17D2 LTR ERVK 0 809 325 2 1765 595 36 12 12 chr3 154725051 154725134 -4874649 + (GGAGA)n Simple_repeat Simple_repeat 4 86 0 2 1765 3702 115 155 44 chr3 154725134 154725461 -4874322 - RMER17D2 LTR ERVK -485 324 1 2 1765 8795 151 48 9 chr3 154727472 154729182 -4870601 - L1_Mur1 LINE L1 -1670 4216 2441 2 1765 539 271 185 2 chr3 154729226 154729400 -4870383 - B3A SINE B2 -12 204 1 2 1765 208 241 11 57 chr3 154729427 154729515 -4870268 + (TATG)n Simple_repeat Simple_repeat 3 86 0 2 1765 1290 164 101 0 chr3 154729531 154729750 -4870033 + ORR1B1 LTR MaLR 1 241 -153 2 1765 2525 237 41 7 chr3 154729757 154730364 -4869419 + ORR1B1-int LTR MaLR 1 628 -881 2 1765 430 156 41 72 chr3 154730359 154730456 -4869327 + MT2B2 LTR ERVL 155 248 -336 2 1765 1825 199 32 11 chr3 154730443 154730813 -4868970 + ORR1B1-int LTR MaLR 1132 1509 0 2 1765 1896 184 52 90 chr3 154730814 154731214 -4868569 + ORR1B1 LTR MaLR 2 386 -8 2 1765 349 325 18 0 chr3 154731213 154731327 -4868456 - RSINE1 SINE B4 -46 119 4 2 1765 264 256 11 109 chr3 154731394 154731486 -4868297 - RSINE1 SINE B4 0 165 83 2 1765 1338 73 0 0 chr3 154731592 154731771 -4868012 + (TTTC)n Simple_repeat Simple_repeat 1 179 0 2 1765 1476 292 102 26 chr3 154731780 154732674 -4867109 - RMER1A Other Other -2 1028 1 2 1765 275 351 21 11 chr3 154732687 154732782 -4867001 - B4A SINE B4 -196 96 1 2 1765 199 64 61 41 chr3 154735314 154735363 -4864420 + (TTATA)n Simple_repeat Simple_repeat 5 54 0 2 1765 1191 101 0 0 chr3 154735364 154735523 -4864260 - B2_Mm2 SINE B2 -34 161 3 2 1765 306 0 0 0 chr3 154736495 154736529 -4863254 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 2 1765 180 0 0 0 chr3 154736538 154736558 -4863225 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 2 1765 793 84 70 7 chr3 154736562 154736705 -4863078 - RMER17B LTR ERVK -495 463 312 2 1765 387 0 0 0 chr3 154736743 154736786 -4862997 + (TG)n Simple_repeat Simple_repeat 2 44 0 2 1765 185 154 0 25 chr3 154736797 154736837 -4862946 + (TATATG)n Simple_repeat Simple_repeat 1 39 0 2 1765 639 316 65 54 chr3 154736881 154737159 -4862624 + B4 SINE B4 12 292 0 2 1765 39 60 0 0 chr3 154737364 154737431 -4862352 + AT_rich Low_complexity Low_complexity 1 67 0 2 1765 314 349 116 0 chr3 154738018 154738164 -4861619 + LTR16A LTR ERVL 4 166 -285 2 1765 382 314 56 16 chr3 154738516 154738642 -4861141 + B1_Mur1 SINE Alu 1 131 -18 2 1765 1004 83 7 0 chr3 154739087 154739231 -4860552 + (GAA)n Simple_repeat Simple_repeat 1 145 0 3 1765 440 278 68 0 chr3 154739331 154739464 -4860319 - ORR1D2 LTR MaLR 0 370 229 3 1765 926 152 18 12 chr3 154739925 154740091 -4859692 - URR1A DNA MER1_type 0 226 60 3 1765 2074 202 120 83 chr3 154740633 154740896 -4858887 - RMER6C LTR ERVK 0 690 421 3 1765 206 95 24 0 chr3 154740896 154740938 -4858845 + (CACTG)n Simple_repeat Simple_repeat 3 45 0 3 1765 2074 202 120 83 chr3 154740938 154741339 -4858444 - RMER6C LTR ERVK -270 420 1 3 1765 527 167 14 0 chr3 154741385 154741496 -4858287 - RLTR33 LTR ERVK 0 678 605 3 1765 6866 101 21 12 chr3 154741496 154742706 -4857077 + L1_Mus3 LINE L1 5391 6638 0 3 1765 3697 101 50 55 chr3 154742715 154743333 -4856450 - RLTR33 LTR ERVK -61 617 3 3 1765 498 17 0 0 chr3 154744030 154744089 -4855694 + (TG)n Simple_repeat Simple_repeat 1 59 0 3 1765 531 262 32 8 chr3 154744089 154744212 -4855571 - RSINE1 SINE B4 -3 162 37 3 1765 405 0 0 0 chr3 154744351 154744396 -4855387 + (TG)n Simple_repeat Simple_repeat 2 46 0 3 1765 7844 42 4 0 chr3 154744701 154745912 -4853871 - L1Md_F2 LINE L1 0 6582 5368 3 1765 504 0 0 0 chr3 154746159 154746215 -4853568 + (TC)n Simple_repeat Simple_repeat 1 56 0 3 1765 250 221 45 23 chr3 154746349 154746437 -4853346 + Lx8 LINE L1 7267 7356 -117 3 1765 1071 285 133 22 chr3 154747118 154747653 -4852130 + Lx8 LINE L1 6880 7473 0 3 1765 237 302 112 60 chr3 154747689 154747974 -4851809 + Kanga1 DNA Tc2 1436 1735 -10 3 1765 370 302 10 20 chr3 154748698 154748796 -4850987 + B3 SINE B2 40 136 -80 3 1765 1143 175 37 5 chr3 154748798 154749016 -4850767 - URR1B DNA MER1_type 0 225 1 3 1765 473 195 23 0 chr3 154749016 154749100 -4850683 + B3 SINE B2 131 216 0 3 1765 25 51 0 0 chr3 154749472 154749511 -4850272 + AT_rich Low_complexity Low_complexity 1 39 0 3 1765 621 305 110 21 chr3 154751926 154752207 -4847576 - MER2 DNA MER2_type -38 307 2 3 1765 195 42 0 0 chr3 154752702 154752726 -4847057 + (CAT)n Simple_repeat Simple_repeat 2 25 0 3 1765 180 0 0 0 chr3 154754116 154754136 -4845647 + (A)n Simple_repeat Simple_repeat 1 20 0 3 1765 303 136 0 0 chr3 154754648 154754707 -4845076 + (CCAA)n Simple_repeat Simple_repeat 1 59 0 3 1765 304 266 69 60 chr3 154754812 154754928 -4844855 - BC1_Mm scRNA scRNA -34 118 2 3 1765 625 152 19 0 chr3 154754981 154755086 -4844697 + HY1 scRNA scRNA 1 107 -5 3 1765 1086 194 18 5 chr3 154755057 154755274 -4844509 + RLTR23 LTR ERV1 200 419 -11 3 1765 250 195 61 0 chr3 154755327 154755409 -4844374 + (TCTA)n Simple_repeat Simple_repeat 4 90 0 3 1765 332 278 11 11 chr3 154755409 154755500 -4844283 - PB1D10 SINE Alu -26 91 1 3 1765 371 281 26 0 chr3 154755671 154755785 -4843998 + GA-rich Low_complexity Low_complexity 5 121 0 3 1765 243 0 0 0 chr3 154756364 154756391 -4843392 + (CCCCG)n Simple_repeat Simple_repeat 1 27 0 3 1765 274 323 164 58 chr3 154757291 154757863 -4841920 - L2 LINE L2 -526 2893 2261 3 1765 1099 289 92 77 chr3 154757952 154758121 -4841662 - Lx8 LINE L1 -313 7160 6975 3 1765 387 0 0 0 chr3 154758121 154758164 -4841619 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 1765 1099 289 92 77 chr3 154758164 154758578 -4841205 - Lx8 LINE L1 -499 6974 6568 3 1765 669 272 16 16 chr3 154758580 154758763 -4841020 + Lx8 LINE L1 7162 7344 -129 3 1765 549 258 104 23 chr3 154759070 154759467 -4840316 + L1MC LINE L1 5214 5652 -2133 3 1765 1694 264 11 17 chr3 154759693 154760159 -4839624 - Lx7 LINE L1 -744 6952 6490 3 1765 527 240 36 58 chr3 154760162 154760299 -4839484 + ORR1D1 LTR MaLR 1 134 -240 3 1765 240 140 20 0 chr3 154760313 154760363 -4839420 + (TTTG)n Simple_repeat Simple_repeat 2 52 0 3 1765 214 182 0 0 chr3 154760619 154760663 -4839120 + A-rich Low_complexity Low_complexity 1 44 0 3 1765 4799 110 7 7 chr3 154760895 154761638 -4838145 - Lx3A LINE L1 -140 6841 6099 3 1765 1902 188 31 11 chr3 154762010 154762360 -4837423 - ORR1A2 LTR MaLR -10 357 1 3 1765 1105 161 120 21 chr3 154762360 154762601 -4837182 - ORR1A2-int LTR MaLR 0 1509 1245 3 1765 2146 107 3 59 chr3 154762619 154762957 -4836826 - ORR1A2 LTR MaLR -8 319 1 3 1765 283 294 41 107 chr3 154763228 154763350 -4836433 - B3A SINE B2 -75 123 10 3 1765 443 265 129 6 chr3 154763423 154763586 -4836197 - B3A SINE B2 -15 183 1 3 1765 22 35 0 0 chr3 154766337 154766366 -4833417 + AT_rich Low_complexity Low_complexity 1 29 0 3 1765 479 127 56 19 chr3 154767596 154767756 -4832027 + (TCTA)n Simple_repeat Simple_repeat 3 168 0 3 1765 191 188 42 17 chr3 154767775 154767894 -4831889 + (TCTA)n Simple_repeat Simple_repeat 1 122 0 3 1765 3311 197 95 41 chr3 154768447 154768545 -4831238 - RMER1A Other Other -15 1015 923 3 1765 306 50 0 0 chr3 154768545 154768585 -4831198 + (CA)n Simple_repeat Simple_repeat 1 40 0 3 1765 3311 197 95 41 chr3 154768585 154769368 -4830415 - RMER1A Other Other -108 922 88 3 1765 339 271 118 37 chr3 154769757 154769918 -4829865 + L1MD LINE L1 4225 4398 -1748 3 1765 310 339 117 56 chr3 154770160 154770589 -4829194 - MLT-int LTR MaLR -40 1540 726 3 1765 657 171 9 0 chr3 154770619 154770724 -4829059 + B1_Mur4 SINE Alu 1 106 -44 3 1765 328 291 50 109 chr3 154770627 154770828 -4828955 + MT2B2 LTR ERVL 175 363 -221 3 1765 258 278 88 11 chr3 154772806 154772897 -4826886 + B1F SINE Alu 43 140 -9 3 1765 406 335 66 32 chr3 154773364 154773678 -4826105 - MER57E1 LTR ERV1 -4 368 5 3 1765 332 367 9 0 chr3 154774200 154774309 -4825474 + PB1D10 SINE Alu 1 110 -7 3 1765 397 310 67 60 chr3 154774317 154774602 -4825181 + B4 SINE B4 2 288 -4 3 1765 426 357 130 32 chr3 154775084 154775423 -4824360 - MER92B LTR ERV1 -180 456 85 3 1765 1303 206 143 0 chr3 154775438 154775739 -4824044 + MTC LTR MaLR 3 346 -75 3 1765 226 143 58 58 chr3 154776520 154776572 -4823211 + RMER15 LTR ERVL 88 139 -436 3 1765 826 309 112 9 chr3 154776585 154776908 -4822875 + RMER15 LTR ERVL 220 575 0 3 1765 21 71 0 0 chr3 154777197 154777239 -4822544 + AT_rich Low_complexity Low_complexity 1 42 0 3 1765 225 0 0 0 chr3 154777612 154777637 -4822146 + (TA)n Simple_repeat Simple_repeat 1 25 0 3 1765 236 310 29 59 chr3 154778069 154778227 -4821556 + MIRm SINE MIR 79 229 -33 3 1765 229 342 79 0 chr3 154778515 154778629 -4821154 + L2b LINE L2 3252 3374 -1 3 1765 240 59 0 0 chr3 154779900 154779934 -4819849 + (T)n Simple_repeat Simple_repeat 1 34 0 3 1765 364 274 95 87 chr3 154781650 154781914 -4817869 + L1M5 LINE L1 3012 3277 -2869 3 1765 310 400 42 0 chr3 154782208 154782373 -4817410 + L1M5 LINE L1 3662 3833 -2313 3 1765 899 9 9 0 chr3 154782553 154782661 -4817122 + (TC)n Simple_repeat Simple_repeat 1 109 0 3 1765 375 375 130 20 chr3 154782675 154782974 -4816809 + MLT1E2 LTR MaLR 140 471 -156 3 1765 857 297 5 5 chr3 154783124 154783320 -4816463 + ID_B1 SINE B4 5 200 -24 3 1765 234 393 140 18 chr3 154783783 154784125 -4815658 - LTR16B1 LTR ERVL -94 386 3 3 1765 341 343 36 131 chr3 154784267 154784542 -4815241 + L1MA4A LINE L1 5035 5283 -860 3 1765 220 189 27 0 chr3 154784547 154784621 -4815162 + (CA)n Simple_repeat Simple_repeat 2 77 0 3 1765 573 324 89 27 chr3 154784628 154785177 -4814606 + L1MA4A LINE L1 5303 5885 -418 3 1765 326 319 34 17 chr3 154786146 154786264 -4813519 + MLT1A1 LTR MaLR 289 408 0 3 1765 389 224 484 75 chr3 154786324 154786483 -4813300 + URR1B DNA MER1_type 2 225 0 3 1765 548 235 153 48 chr3 154786898 154787126 -4812657 - RMER15 LTR ERVL 0 575 324 3 1765 240 204 19 0 chr3 154787294 154787348 -4812435 - RMER15 LTR ERVL -520 55 1 3 1765 723 186 131 8 chr3 154787920 154788202 -4811581 - RMER17B LTR ERVK -518 440 16 3 1765 350 293 48 24 chr3 154788700 154788826 -4810957 - L1M2 LINE L1 -2074 4069 3941 3 1765 766 224 228 0 chr3 154790340 154790581 -4809202 - Lx5 LINE L1 -121 6929 6634 3 1765 225 0 0 0 chr3 154790728 154790753 -4809030 + (TTTTA)n Simple_repeat Simple_repeat 2 26 0 3 1765 2858 189 46 18 chr3 154791422 154791982 -4807801 - RLTR20B3 LTR ERVK 0 577 2 3 1765 227 239 44 140 chr3 154793157 154793293 -4806490 + LTRIS2 LTR ERV1 52 174 -390 3 1765 455 15 0 43 chr3 154794684 154794785 -4804998 - L1Md_F2 LINE L1 0 6582 6495 3 1765 1340 126 92 12 chr3 154794991 154795240 -4804543 + L1_Mus4 LINE L1 6365 6633 -3 3 1766 1939 285 92 34 chr3 154796950 154797691 -4802092 + RCHARR1 DNA MER1_type 3 786 -188 3 1766 360 111 0 0 chr3 154797978 154798032 -4801751 + (TG)n Simple_repeat Simple_repeat 2 55 0 3 1766 725 322 25 0 chr3 154798070 154798272 -4801511 - ID_B1 SINE B4 -12 212 6 3 1766 24 0 0 0 chr3 154798891 154798915 -4800868 + AT_rich Low_complexity Low_complexity 1 24 0 3 1766 4162 62 4 2 chr3 154798939 154799470 -4800313 - L1_Mus1 LINE L1 -3 6564 6033 3 1766 22 56 0 0 chr3 154801134 154801170 -4798613 + AT_rich Low_complexity Low_complexity 1 36 0 3 1766 402 286 29 17 chr3 154802033 154802207 -4797576 + L1M2 LINE L1 5579 5754 -543 3 1766 4404 72 53 8 chr3 154802508 154803113 -4796670 + Lx3_Mus LINE L1 6378 7009 0 3 1766 564 306 48 33 chr3 154803326 154803975 -4795808 - L1M2 LINE L1 -2058 4085 3374 3 1766 281 281 82 10 chr3 154804256 154804353 -4795430 - RMER20B LTR ERVK -205 422 319 3 1766 453 351 16 44 chr3 154804514 154804696 -4795087 - B3A SINE B2 -16 182 6 3 1766 236 330 196 71 chr3 154804790 154805015 -4794768 - B4 SINE B4 -38 254 2 3 1766 216 0 0 0 chr3 154805340 154805364 -4794419 + (A)n Simple_repeat Simple_repeat 1 24 0 3 1766 185 65 32 0 chr3 154808478 154808509 -4791274 + (TTTAA)n Simple_repeat Simple_repeat 5 36 0 3 1766 37242 37 3 7 chr3 154808915 154815314 -4784469 - L1Md_T LINE L1 0 6582 214 3 1766 333 0 0 0 chr3 154815781 154815818 -4783965 + (TTTA)n Simple_repeat Simple_repeat 2 38 0 3 1766 423 0 0 0 chr3 154815818 154815865 -4783918 + (TG)n Simple_repeat Simple_repeat 2 48 0 3 1766 32630 68 4 1 chr3 154815909 154821931 -4777852 - L1Md_F2 LINE L1 -2 6580 541 3 1766 584 301 115 14 chr3 154822200 154822496 -4777287 - Lx8 LINE L1 -259 7214 6889 3 1766 278 297 59 33 chr3 154822496 154822649 -4777134 - RLTR12B LTR ERVK -5 523 367 4 1766 524 253 139 29 chr3 154822732 154822950 -4776833 - RLTR12B LTR ERVK -315 253 8 4 1766 307 264 65 19 chr3 154822956 154823064 -4776719 - Lx8 LINE L1 -585 6888 6776 3 1766 228 296 198 0 chr3 154823760 154823841 -4775942 - ID_B1 SINE B4 -41 183 87 4 1766 445 326 44 58 chr3 154824342 154824479 -4775304 + RSINE1 SINE B4 17 151 -14 4 1766 183 80 0 0 chr3 154824480 154824505 -4775278 + (CA)n Simple_repeat Simple_repeat 2 26 0 4 1766 21 95 0 0 chr3 154824512 154824575 -4775208 + AT_rich Low_complexity Low_complexity 1 63 0 4 1766 891 264 72 114 chr3 154826469 154826845 -4772938 + MTE2a LTR MaLR 13 372 -7 4 1766 327 85 0 0 chr3 154827134 154827181 -4772602 + (TCC)n Simple_repeat Simple_repeat 3 49 0 4 1766 462 36 0 0 chr3 154827183 154827239 -4772544 + (TTTA)n Simple_repeat Simple_repeat 4 59 0 4 1766 846 63 0 0 chr3 154827248 154827359 -4772424 - B1_Mus2 SINE Alu -32 115 5 4 1766 7059 178 49 16 chr3 154827559 154829470 -4770313 - Lx2B LINE L1 -4 6996 5039 4 1766 6479 60 1 21 chr3 154829470 154830309 -4769474 - RLTR13B2 LTR ERVK 0 822 1 4 1766 7059 155 43 23 chr3 154830309 154830850 -4768933 - Lx2B LINE L1 -839 5038 4448 4 1766 2184 174 18 2 chr3 154830927 154831530 -4768253 - L1VL4 LINE L1 -2478 1434 825 4 1766 1188 181 19 0 chr3 154831604 154831864 -4767919 - Lx2B LINE L1 -3024 2856 2592 4 1766 755 333 67 32 chr3 154832089 154832430 -4767353 + MT2A LTR ERVL 181 533 0 4 1766 353 204 14 14 chr3 154832500 154832639 -4767144 + (TA)n Simple_repeat Simple_repeat 1 139 0 4 1766 22 70 0 0 chr3 154832857 154832900 -4766883 + AT_rich Low_complexity Low_complexity 1 43 0 4 1766 2036 160 0 22 chr3 154833063 154833421 -4766362 - RLTR11B LTR ERVK 0 453 104 4 1766 26 0 0 0 chr3 154833707 154833733 -4766050 + AT_rich Low_complexity Low_complexity 1 26 0 4 1766 376 51 34 0 chr3 154836342 154836401 -4763382 + (TC)n Simple_repeat Simple_repeat 2 62 0 4 1766 231 88 0 0 chr3 154836401 154836435 -4763348 + (CA)n Simple_repeat Simple_repeat 1 34 0 4 1766 489 34 0 0 chr3 154836435 154836493 -4763290 + (GA)n Simple_repeat Simple_repeat 2 60 0 4 1766 208 333 92 9 chr3 154836565 154836674 -4763109 - L2a LINE L2 -82 3344 3227 4 1766 5278 189 154 10 chr3 154836871 154838166 -4761617 + L1_Mur2 LINE L1 1795 3275 -2602 4 1766 394 259 91 3 chr3 154838174 154838306 -4761477 + L1M4b LINE L1 2093 2336 -4766 4 1766 280 323 104 4 chr3 154838520 154838800 -4760983 + L1M4b LINE L1 2594 2901 -4433 4 1766 362 341 70 17 chr3 154839129 154839487 -4760296 + L1M4b LINE L1 3036 3412 -3594 4 1766 3967 182 17 16 chr3 154839660 154840418 -4759365 + Lx4B LINE L1 6296 7054 -4 4 1766 22 35 0 0 chr3 154840418 154840447 -4759336 + AT_rich Low_complexity Low_complexity 1 29 0 4 1766 261 57 0 0 chr3 154840528 154840563 -4759220 + (TG)n Simple_repeat Simple_repeat 2 36 0 4 1766 241 206 46 31 chr3 154840618 154840683 -4759100 + MER54B LTR ERVL 43 108 -685 4 1766 248 0 0 30 chr3 154841330 154841363 -4758420 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 4 1766 633 99 24 16 chr3 154841397 154841520 -4758263 - L1Md_F2 LINE L1 0 6582 6459 4 1766 188 296 112 56 chr3 154842459 154842602 -4757181 + L2c LINE L2 3017 3167 -220 4 1766 1428 67 0 10 chr3 154842724 154842919 -4756864 - B2_Mm2 SINE B2 0 195 3 4 1766 324 70 0 0 chr3 154844750 154844793 -4754990 + (CAT)n Simple_repeat Simple_repeat 2 44 0 4 1766 204 40 0 0 chr3 154844793 154844818 -4754965 + (CAA)n Simple_repeat Simple_repeat 3 27 0 4 1766 21 0 0 0 chr3 154845576 154845597 -4754186 + AT_rich Low_complexity Low_complexity 1 21 0 4 1766 441 0 0 0 chr3 154845695 154845744 -4754039 + (CA)n Simple_repeat Simple_repeat 2 50 0 4 1766 402 301 86 11 chr3 154845775 154845950 -4753833 - Lx9 LINE L1 -213 7431 7244 4 1766 348 311 62 23 chr3 154846787 154847044 -4752739 + L1M3 LINE L1 5037 5303 -837 4 1766 181 315 19 0 chr3 154847194 154847248 -4752535 - MIRc SINE MIR -190 78 24 4 1766 364 241 68 14 chr3 154847509 154847656 -4752127 - Lx2B LINE L1 -13 6987 6833 4 1766 225 0 0 0 chr3 154847947 154847972 -4751811 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 4 1766 180 0 0 0 chr3 154848338 154848358 -4751425 + (TG)n Simple_repeat Simple_repeat 1 20 0 4 1766 234 0 0 0 chr3 154848506 154848532 -4751251 + (TG)n Simple_repeat Simple_repeat 1 26 0 4 1766 2773 78 5 5 chr3 154848933 154849321 -4750462 + L1_Mus3 LINE L1 6247 6634 -4 4 1766 899 260 15 0 chr3 154851885 154852081 -4747702 - ID_B1 SINE B4 -5 219 21 4 1766 282 56 0 0 chr3 154852777 154852813 -4746970 + (TC)n Simple_repeat Simple_repeat 2 37 0 4 1766 306 0 0 0 chr3 154852813 154852847 -4746936 + (CA)n Simple_repeat Simple_repeat 1 34 0 4 1766 236 260 94 19 chr3 154853769 154853875 -4745908 - L1M5 LINE L1 -1548 4598 4485 4 1766 1827 210 75 71 chr3 154854453 154854999 -4744784 + RMER19C LTR ERVK 1 611 0 4 1766 183 42 0 0 chr3 154855057 154855081 -4744702 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 4 1766 213 228 123 65 chr3 154855457 154855612 -4744171 - MIR SINE MIR -35 227 64 4 1766 22 70 0 0 chr3 154857141 154857184 -4742599 + AT_rich Low_complexity Low_complexity 1 43 0 4 1766 21 0 0 0 chr3 154857206 154857227 -4742556 + AT_rich Low_complexity Low_complexity 1 21 0 4 1766 297 0 0 0 chr3 154858933 154858966 -4740817 + (T)n Simple_repeat Simple_repeat 1 33 0 4 1766 860 299 33 35 chr3 154859031 154859311 -4740472 - Lx6 LINE L1 -24 7436 7179 4 1766 372 59 0 0 chr3 154859313 154859364 -4740419 + (CA)n Simple_repeat Simple_repeat 1 51 0 4 1766 463 216 21 167 chr3 154859423 154859507 -4740276 - L1_Mur3 LINE L1 -463 5417 5351 4 1766 3363 109 20 48 chr3 154859507 154860054 -4739729 + L1_Mus4 LINE L1 6097 6628 -8 4 1766 463 216 21 167 chr3 154860054 154860208 -4739575 - L1_Mur3 LINE L1 -530 5350 5214 4 1766 482 254 0 0 chr3 154860297 154860411 -4739372 - L1_Mur3 LINE L1 -672 5208 5095 4 1766 689 277 47 28 chr3 154861656 154861868 -4737915 - B3 SINE B2 0 216 1 4 1766 23 0 0 0 chr3 154861877 154861900 -4737883 + AT_rich Low_complexity Low_complexity 1 23 0 4 1766 392 283 101 35 chr3 154861900 154862127 -4737656 - Lx8 LINE L1 -6 7467 7226 4 1766 586 290 74 10 chr3 154862204 154862406 -4737377 - B3 SINE B2 0 216 2 4 1766 1638 216 58 42 chr3 154862454 154862960 -4736823 - RMER19C LTR ERVK -250 652 138 4 1766 401 296 137 14 chr3 154862994 154863277 -4736506 + MLT1A0 LTR MaLR 25 343 -22 4 1766 333 0 0 0 chr3 154863369 154863406 -4736377 + (CAA)n Simple_repeat Simple_repeat 2 38 0 4 1766 369 0 0 0 chr3 154864754 154864795 -4734988 + (TC)n Simple_repeat Simple_repeat 1 41 0 4 1766 486 174 54 0 chr3 154865128 154865220 -4734563 + ORR1C2 LTR MaLR 282 378 -6 4 1766 306 358 0 24 chr3 154865506 154865629 -4734154 - Arthur1A DNA Tip100 -23 154 35 4 1766 552 328 86 73 chr3 154865831 154866226 -4733557 - MTD LTR MaLR -14 405 6 4 1766 413 336 96 0 chr3 154866279 154866425 -4733358 - RSINE1 SINE B4 -4 161 2 4 1766 515 221 8 0 chr3 154866630 154866757 -4733026 + (TA)n Simple_repeat Simple_repeat 2 129 0 4 1766 255 61 0 0 chr3 154866830 154866863 -4732920 + (CA)n Simple_repeat Simple_repeat 2 34 0 4 1766 223 255 0 0 chr3 154866864 154866911 -4732872 + GA-rich Low_complexity Low_complexity 2 48 0 4 1766 2066 196 115 9 chr3 154867306 154867835 -4731948 + RMER4B LTR ERVK 1 585 0 4 1766 3173 57 2 12 chr3 154868836 154869244 -4730539 + L1_Mus1 LINE L1 6162 6565 -2 4 1766 22 35 0 0 chr3 154869249 154869278 -4730505 + AT_rich Low_complexity Low_complexity 1 29 0 4 1766 972 62 0 0 chr3 154869859 154869987 -4729796 + (TTCC)n Simple_repeat Simple_repeat 3 130 0 4 1766 528 294 70 32 chr3 154871138 154871422 -4728361 + L1M2 LINE L1 4482 4776 -1367 4 1766 495 341 50 16 chr3 154871767 154871949 -4727834 + B4 SINE B4 9 196 -96 4 1766 286 321 42 219 chr3 154872347 154872551 -4727232 + MTE2a LTR MaLR 1 170 -209 4 1766 723 116 0 0 chr3 154872551 154872663 -4727120 + (TCTA)n Simple_repeat Simple_repeat 3 114 0 4 1766 286 321 42 219 chr3 154872663 154872745 -4727038 + MTE2a LTR MaLR 171 236 -143 4 1766 229 352 90 27 chr3 154874181 154874292 -4725491 - ORR1E LTR MaLR -167 192 75 4 1766 36471 62 2 3 chr3 154874426 154880423 -4719360 - L1Md_F3 LINE L1 -14 6570 620 4 1766 2471 133 7 31 chr3 154880997 154881453 -4718330 - L1_Mur2 LINE L1 -1972 3905 3461 4 1766 23 33 0 0 chr3 154881458 154881488 -4718295 + AT_rich Low_complexity Low_complexity 1 30 0 4 1766 699 162 148 7 chr3 154881493 154881648 -4718135 - Lx3B LINE L1 -7 6966 6790 4 1766 663 96 299 52 chr3 154881650 154881804 -4717979 - Lx3B LINE L1 -876 6100 5909 4 1766 1238 163 38 13 chr3 154881824 154882060 -4717723 + Lx4A LINE L1 6814 7055 -3 4 1766 29 0 0 0 chr3 154882063 154882092 -4717691 + AT_rich Low_complexity Low_complexity 1 29 0 4 1766 284 0 28 0 chr3 154882702 154882738 -4717045 + (TTTG)n Simple_repeat Simple_repeat 4 40 0 4 1766 8530 36 0 0 chr3 154882769 154884047 -4715736 - L1Md_F3 LINE L1 -3 6581 5304 4 1766 202 204 18 36 chr3 154884472 154884506 -4715277 + (CATA)n Simple_repeat Simple_repeat 4 38 0 4 1766 252 0 0 0 chr3 154884506 154884534 -4715249 + (TG)n Simple_repeat Simple_repeat 2 29 0 4 1766 202 204 18 36 chr3 154884534 154884555 -4715228 + (CATA)n Simple_repeat Simple_repeat 3 22 0 4 1766 2006 129 63 3 chr3 154885321 154885654 -4714129 + Lx2 LINE L1 6644 6996 -1 4 1766 944 252 148 133 chr3 154885718 154886622 -4713161 + RLTR19-int LTR ERVK 2427 3344 -2793 4 1766 1504 212 48 65 chr3 154886718 154887241 -4712542 + RLTR19-int LTR ERVK 3556 3965 -2172 4 1766 286 219 0 76 chr3 154887284 154887363 -4712420 + RLTR19-int LTR ERVK 4037 4109 -2028 4 1766 660 190 32 84 chr3 154887436 154887591 -4712192 + RLTR19-int LTR ERVK 4128 4274 -1863 4 1766 360 0 0 0 chr3 154887743 154887783 -4712000 + (CA)n Simple_repeat Simple_repeat 1 40 0 4 1766 520 256 44 67 chr3 154888890 154889070 -4710713 - RMER12 LTR ERVK -2 1320 1145 4 1766 3531 243 152 58 chr3 154889423 154889749 -4710034 - RLTR22_Mur LTR ERVK -213 1635 1359 4 1766 450 36 0 0 chr3 154889749 154889805 -4709978 + (CA)n Simple_repeat Simple_repeat 2 57 0 4 1766 3531 237 156 51 chr3 154889805 154891005 -4708778 - RLTR22_Mur LTR ERVK -490 1358 2 4 1766 618 26 0 0 chr3 154892125 154892201 -4707582 + (CA)n Simple_repeat Simple_repeat 1 76 0 4 1766 194 359 21 21 chr3 154893212 154893306 -4706477 - L2 LINE L2 -654 2765 2672 5 1766 291 372 53 35 chr3 154893810 154893980 -4705803 + MLT1C LTR MaLR 292 464 -3 5 1766 26 0 0 0 chr3 154894682 154894708 -4705075 + AT_rich Low_complexity Low_complexity 1 26 0 5 1766 251 336 65 16 chr3 154894863 154894987 -4704796 - B1F SINE Alu -10 139 10 5 1766 1034 82 0 0 chr3 154895865 154895999 -4703784 + B1_Mus1 SINE Alu 6 139 -9 5 1766 197 33 33 0 chr3 154895999 154896029 -4703754 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 5 1766 1124 13 27 0 chr3 154896241 154896391 -4703392 + (CA)n Simple_repeat Simple_repeat 1 154 0 5 1766 322 328 5 43 chr3 154896593 154896778 -4703005 + (TATATG)n Simple_repeat Simple_repeat 3 180 0 5 1766 1132 199 153 6 chr3 154896797 154897110 -4702673 + RLTR15 LTR ERVK 1 359 0 5 1766 353 22 22 0 chr3 154899142 154899188 -4700595 + (TC)n Simple_repeat Simple_repeat 2 48 0 5 1766 7449 184 21 18 chr3 154899244 154900670 -4699113 - Lx4B LINE L1 0 7058 5657 5 1766 1150 257 28 18 chr3 154901619 154901960 -4697823 - MTD LTR MaLR 0 421 79 5 1766 329 261 11 74 chr3 154902004 154902099 -4697684 + ID_B1 SINE B4 133 221 -3 5 1766 516 16 0 0 chr3 154902143 154902204 -4697579 + (CA)n Simple_repeat Simple_repeat 2 62 0 5 1766 309 169 0 0 chr3 154903677 154903736 -4696047 + (TTG)n Simple_repeat Simple_repeat 1 59 0 5 1766 452 252 82 25 chr3 154903736 154903858 -4695925 - B1_Mur2 SINE Alu -2 147 19 5 1766 1230 61 0 22 chr3 154904523 154904707 -4695076 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 5 1766 780 153 9 18 chr3 154904708 154904937 -4694846 + GA-rich Low_complexity Low_complexity 1 226 0 5 1766 3229 38 8 13 chr3 154905319 154905717 -4694066 + MTA_Mm LTR MaLR 1 396 0 5 1766 8383 61 10 2 chr3 154905717 154906806 -4692977 + MTA_Mm-int LTR MaLR 1 1098 0 5 1766 3104 61 8 0 chr3 154906806 154907199 -4692584 + MTA_Mm LTR MaLR 1 396 0 5 1766 224 233 33 0 chr3 154907362 154907422 -4692361 + CT-rich Low_complexity Low_complexity 1 62 0 5 1766 265 368 56 65 chr3 154907431 154907646 -4692137 + MER74C LTR ERVL 39 251 -209 5 1766 303 296 30 22 chr3 154908204 154908313 -4691470 + MLT1F-int LTR MaLR 405 603 -768 5 1766 258 0 0 0 chr3 154908313 154908343 -4691440 - L1_Mus4 LINE L1 -648 5988 5959 5 1766 3407 67 16 50 chr3 154908346 154908830 -4690953 + L1_Mus2 LINE L1 6099 6566 0 5 1766 299 331 66 26 chr3 154909051 154909203 -4690580 + MLT1F-int LTR MaLR 866 1023 -466 5 1766 801 319 58 28 chr3 154911210 154911574 -4688209 - Lx8 LINE L1 -9 7464 7090 5 1766 219 368 58 14 chr3 154912164 154912302 -4687481 + B2_Mm2 SINE B2 2 145 -50 5 1766 1460 215 47 44 chr3 154912569 154912910 -4686873 + RMER19B LTR ERVK 305 646 -256 5 1766 329 365 42 51 chr3 154912865 154913079 -4686704 - MLT1E1A LTR MaLR -67 613 402 5 1766 350 306 0 48 chr3 154914830 154914933 -4684850 - PB1D10 SINE Alu 0 117 20 5 1766 8668 104 29 0 chr3 154914991 154917168 -4682615 + L1Md_F2 LINE L1 179 2419 -3464 5 1766 5364 74 0 0 chr3 154917161 154918008 -4681775 + L1Md_F2 LINE L1 5430 6276 -306 5 1766 290 91 0 83 chr3 154918356 154918416 -4681367 + CT-rich Low_complexity Low_complexity 2 56 0 5 1766 3040 33 0 8 chr3 154918435 154918804 -4680979 + L1Md_F3 LINE L1 6205 6570 -14 5 1766 654 238 52 21 chr3 154918805 154918998 -4680785 - ORR1C1 LTR MaLR -169 209 11 5 1766 524 293 53 13 chr3 154919042 154919194 -4680589 + Lx8 LINE L1 7106 7263 -210 5 1766 2750 36 9 0 chr3 154919182 154919511 -4680272 - L1Md_F3 LINE L1 -249 6335 6004 5 1766 913 199 18 6 chr3 154919511 154919678 -4680105 + ORR1C1 LTR MaLR 202 370 -8 5 1766 246 341 56 76 chr3 154920023 154920220 -4679563 + L2b LINE L2 3183 3375 0 5 1766 361 323 56 59 chr3 154920334 154920640 -4679143 - MamRep434 DNA TcMar -103 323 19 5 1766 402 268 224 11 chr3 154923185 154923359 -4676424 - MER82 DNA MER2_type -374 279 69 5 1766 522 0 0 0 chr3 154923804 154923862 -4675921 + (TC)n Simple_repeat Simple_repeat 1 58 0 5 220 15319 137 26 10 chr3 154924531 154928813 -4670970 + L1_Mus4 LINE L1 426 6634 -2 5 1767 318 26 0 0 chr3 154928989 154929028 -4670755 + (GA)n Simple_repeat Simple_repeat 1 39 0 5 1767 1599 10 0 0 chr3 154929028 154929234 -4670549 + (GAA)n Simple_repeat Simple_repeat 1 206 0 5 1767 23 33 0 0 chr3 154932195 154932225 -4667558 + AT_rich Low_complexity Low_complexity 1 30 0 5 1767 258 164 115 0 chr3 154933943 154934004 -4665779 + MLT1I LTR MaLR 340 407 -4 5 1767 897 118 7 14 chr3 154935032 154935178 -4664605 - B1_Mus2 SINE Alu -1 146 2 5 1767 559 371 118 24 chr3 154936879 154937423 -4662360 + L2 LINE L2 444 1038 -2381 5 1767 27 29 0 0 chr3 154939905 154939939 -4659844 + AT_rich Low_complexity Low_complexity 1 34 0 5 1767 582 275 29 62 chr3 154940548 154940889 -4658894 + Lx9 LINE L1 7306 7635 -9 5 1767 465 325 57 24 chr3 154941716 154941927 -4657856 - RMER15 LTR ERVL -18 557 340 5 1767 740 42 10 0 chr3 154942176 154942272 -4657511 + (TTTA)n Simple_repeat Simple_repeat 2 98 0 5 1767 6850 73 31 0 chr3 154942279 154943495 -4656288 - L1_Mus1 LINE L1 -1 6566 5301 5 1767 185 327 104 30 chr3 154943749 154943913 -4655870 - MIRb SINE MIR -24 244 69 5 1767 195 42 0 0 chr3 154944205 154944229 -4655554 + (T)n Simple_repeat Simple_repeat 1 24 0 5 1767 647 340 44 40 chr3 154945412 154945685 -4654098 - MTEa LTR MaLR -68 311 38 5 1767 594 169 0 0 chr3 154946140 154946258 -4653525 + (TG)n Simple_repeat Simple_repeat 2 119 0 5 1767 25 65 0 0 chr3 154946445 154946491 -4653292 + AT_rich Low_complexity Low_complexity 1 46 0 5 1767 508 301 8 8 chr3 154946612 154946746 -4653037 - B1F1 SINE Alu -10 139 6 5 1767 227 93 0 23 chr3 154946788 154946832 -4652951 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 5 1767 21 0 0 0 chr3 154946867 154946888 -4652895 + AT_rich Low_complexity Low_complexity 1 21 0 5 1767 342 296 96 51 chr3 154946917 154947095 -4652688 - B3A SINE B2 -12 186 1 5 1767 228 238 0 0 chr3 154948725 154948788 -4650995 + (CATA)n Simple_repeat Simple_repeat 4 66 0 5 1767 762 99 0 0 chr3 154948886 154949017 -4650766 + (TC)n Simple_repeat Simple_repeat 2 132 0 5 1767 263 197 15 0 chr3 154949017 154949083 -4650700 + (TATATG)n Simple_repeat Simple_repeat 5 71 0 5 1767 586 118 23 34 chr3 154949083 154949258 -4650525 + (TCTA)n Simple_repeat Simple_repeat 2 174 0 5 1767 210 312 12 0 chr3 154949262 154949342 -4650441 + (TCTCTG)n Simple_repeat Simple_repeat 4 84 0 5 1767 216 0 107 36 chr3 154949506 154949562 -4650221 + (TTTTG)n Simple_repeat Simple_repeat 1 60 0 5 1767 1002 123 14 0 chr3 154949562 154949708 -4650075 - B1_Mus1 SINE Alu 0 148 1 5 1767 1264 266 96 30 chr3 154949824 154950188 -4649595 + MTD LTR MaLR 1 388 -31 5 1767 180 0 0 0 chr3 154950196 154950216 -4649567 + (TAA)n Simple_repeat Simple_repeat 2 21 0 5 1767 632 282 19 0 chr3 154950229 154950385 -4649398 + MTD-int LTR MaLR 1 159 -1099 5 1767 723 283 15 25 chr3 154950367 154950570 -4649213 + MTD LTR MaLR 219 419 0 5 1767 198 0 0 0 chr3 154950662 154950684 -4649099 + (CA)n Simple_repeat Simple_repeat 1 22 0 5 1767 315 0 0 0 chr3 154950684 154950718 -4649065 + (GA)n Simple_repeat Simple_repeat 2 36 0 5 1767 23 33 0 0 chr3 154951126 154951156 -4648627 + AT_rich Low_complexity Low_complexity 1 30 0 5 1767 1113 95 0 7 chr3 154951277 154951425 -4648358 - B1_Mm SINE Alu 0 147 1 5 1767 5110 48 2 3 chr3 154951530 154952158 -4647625 - L1Md_F2 LINE L1 -1 6581 5955 5 1767 260 300 64 0 chr3 154952407 154952517 -4647266 + PB1D10 SINE Alu 1 117 0 5 1767 594 300 96 11 chr3 154953598 154953858 -4645925 - Lx8 LINE L1 -159 7314 7033 5 1767 209 0 97 0 chr3 154954281 154954312 -4645471 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 5 1767 455 33 0 16 chr3 154956493 154956555 -4643228 + (CA)n Simple_repeat Simple_repeat 2 62 0 5 1767 258 307 18 14 chr3 154956569 154956697 -4643086 + GA-rich Low_complexity Low_complexity 1 128 0 5 1767 455 48 16 0 chr3 154958292 154958354 -4641429 + (TCTA)n Simple_repeat Simple_repeat 4 66 0 5 1767 195 180 0 0 chr3 154958554 154958565 -4641218 + A-rich Low_complexity Low_complexity 1 11 0 5 1767 2009 118 0 3 chr3 154958565 154958863 -4640920 + Lx LINE L1 6358 6654 0 5 1767 195 180 0 0 chr3 154958863 154958901 -4640882 + A-rich Low_complexity Low_complexity 12 49 0 5 1767 636 258 27 54 chr3 154959107 154959328 -4640455 + ID_B1 SINE B4 2 216 -8 5 1767 206 179 18 18 chr3 154959742 154959799 -4639984 + (CAAA)n Simple_repeat Simple_repeat 3 59 0 5 1767 306 0 0 0 chr3 154959816 154959850 -4639933 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 5 1767 332 310 35 9 chr3 154960679 154960793 -4638990 - B4A SINE B4 -64 228 112 5 1767 265 370 0 0 chr3 154961714 154961887 -4637896 + (CTGTG)n Simple_repeat Simple_repeat 3 175 0 5 1767 243 0 0 0 chr3 154964360 154964387 -4635396 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 5 1767 289 319 17 8 chr3 154966144 154966261 -4633522 + GA-rich Low_complexity Low_complexity 2 119 0 5 1767 328 210 0 16 chr3 154966313 154966376 -4633407 + ID4 SINE ID 9 70 -13 5 1767 609 27 0 0 chr3 154966378 154966453 -4633330 + (CA)n Simple_repeat Simple_repeat 2 76 0 5 1767 36244 30 0 0 chr3 154966656 154973242 -4626541 - L1Md_T LINE L1 0 6585 1 5 1767 421 262 18 41 chr3 154973300 154973471 -4626312 + (TATATG)n Simple_repeat Simple_repeat 4 170 0 5 1767 423 165 0 0 chr3 154973472 154973557 -4626226 + (TG)n Simple_repeat Simple_repeat 2 86 0 5 1767 341 331 7 13 chr3 154973578 154973728 -4626055 + (TATG)n Simple_repeat Simple_repeat 4 152 0 5 1767 393 22 0 0 chr3 154973870 154973916 -4625867 + (CA)n Simple_repeat Simple_repeat 1 46 0 5 1767 7035 86 3 0 chr3 154974405 154975392 -4624391 - L1_Mus4 LINE L1 -5 6631 5642 5 1767 439 330 95 71 chr3 154975954 154976248 -4623535 + MLT1A0 LTR MaLR 64 364 -1 6 1767 286 298 85 0 chr3 154976305 154976324 -4623459 - B1F1 SINE Alu -35 114 13 6 1767 295 253 27 0 chr3 154976324 154976399 -4623384 - ID_B1 SINE B4 -54 170 94 6 1767 535 322 68 96 chr3 154978668 154979053 -4620730 + MTD LTR MaLR 28 401 -18 6 1767 600 123 0 0 chr3 154979379 154979493 -4620290 + (TC)n Simple_repeat Simple_repeat 2 115 0 6 1767 204 40 0 0 chr3 154979493 154979518 -4620265 + (TG)n Simple_repeat Simple_repeat 2 26 0 6 1767 2230 158 19 81 chr3 154980703 154981184 -4618599 + RLTR11B LTR ERVK 1 451 -2 6 1767 647 70 17 17 chr3 154981646 154981763 -4618020 + (TCTA)n Simple_repeat Simple_repeat 1 117 0 6 1767 330 273 20 30 chr3 154981813 154981927 -4617856 - B1F1 SINE Alu -8 119 1 6 1767 367 335 92 75 chr3 154984714 154984888 -4614895 + ID_B1 SINE B4 33 209 -15 6 1767 1546 240 161 3 chr3 154985004 154985594 -4614189 - Lx6 LINE L1 -366 7094 6190 6 1767 427 316 33 7 chr3 154985602 154985755 -4614028 - Lx6 LINE L1 -1412 6048 5892 6 1767 398 309 21 28 chr3 154985820 154985963 -4613820 - B1F SINE Alu -1 148 7 6 1767 281 296 48 12 chr3 154986279 154986392 -4613391 - L2c LINE L2 -14 3361 3258 6 1767 254 266 0 30 chr3 154988331 154988397 -4611386 - L3 LINE CR1 -5 4484 4421 6 1767 376 333 47 0 chr3 154988480 154988630 -4611153 + LTR16C LTR ERVL 314 470 -19 6 1767 1604 202 25 22 chr3 154988778 154989269 -4610514 + Lx4B LINE L1 6445 6960 -16 6 1767 1648 173 51 3 chr3 154989566 154989880 -4609903 - ORR1A4 LTR MaLR 0 329 1 6 1767 1998 293 112 24 chr3 154990213 154991195 -4608588 + Lx6 LINE L1 6169 7452 -8 6 1767 30166 85 30 1 chr3 154993315 154999400 -4600383 - L1Md_F2 LINE L1 -6 6576 311 6 1767 368 0 43 0 chr3 154999423 154999470 -4600313 + (TTTTG)n Simple_repeat Simple_repeat 2 50 0 6 1767 363 363 24 6 chr3 155000168 155000337 -4599446 - MLT1A1 LTR MaLR -11 397 226 1 1767 320 385 0 0 chr3 155000598 155000720 -4599063 - Lx8 LINE L1 -150 7323 7202 2 1767 1459 291 50 32 chr3 155000731 155001387 -4598396 + L1_Mur3 LINE L1 5198 5865 -15 3 1767 663 25 0 0 chr3 155001657 155001738 -4598045 + (TG)n Simple_repeat Simple_repeat 1 81 0 4 1767 606 95 0 0 chr3 155001738 155001833 -4597950 + (GA)n Simple_repeat Simple_repeat 2 96 0 5 1767 219 135 36 55 chr3 155001899 155001954 -4597829 + (TCTCTG)n Simple_repeat Simple_repeat 1 54 0 6 1767 378 0 0 0 chr3 155001954 155001996 -4597787 + (CA)n Simple_repeat Simple_repeat 2 43 0 7 1767 396 407 20 0 chr3 155002965 155003115 -4596668 - RSINE1 SINE B4 -10 155 3 8 1767 192 40 0 0 chr3 155003233 155003258 -4596525 + (TG)n Simple_repeat Simple_repeat 2 26 0 9 1767 1134 82 0 0 chr3 155004110 155004257 -4595526 - B1_Mus1 SINE Alu 0 148 2 1 1767 250 343 78 16 chr3 155004821 155005064 -4594719 - Lx8 LINE L1 -294 7179 6922 1 1767 181 0 69 0 chr3 155005289 155005318 -4594465 + (CCCCCA)n Simple_repeat Simple_repeat 6 36 0 1 1767 376 290 94 27 chr3 155005430 155005579 -4594204 + MER34A1 LTR ERV1 429 587 0 1 1767 418 273 173 24 chr3 155006019 155006244 -4593539 - MER44A DNA MER2_type -34 305 38 1 1767 249 404 103 13 chr3 155006262 155006492 -4593291 - Tigger7 DNA MER2_type -2203 288 19 1 1767 351 0 0 0 chr3 155007568 155007607 -4592176 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 1767 367 308 73 27 chr3 155007729 155007879 -4591904 + RSINE1 SINE B4 9 165 0 1 1767 11972 154 33 2 chr3 155008075 155011487 -4588296 - Lx2 LINE L1 -1 6996 3462 1 1767 703 231 66 0 chr3 155011484 155011666 -4588117 - Lx3C LINE L1 -11 6965 6772 1 1767 247 257 0 14 chr3 155014511 155014582 -4585201 + CT-rich Low_complexity Low_complexity 2 71 0 2 1767 359 300 25 76 chr3 155014622 155014741 -4585042 - PB1D10 SINE Alu -2 115 3 2 1767 411 378 26 10 chr3 155017194 155017389 -4582394 + B3A SINE B2 1 198 0 2 1767 21 0 0 0 chr3 155017939 155017960 -4581823 + AT_rich Low_complexity Low_complexity 1 21 0 2 1767 267 255 88 39 chr3 155019766 155019868 -4579915 + MLT1H LTR MaLR 70 176 -373 2 1767 397 347 116 42 chr3 155021548 155021909 -4577874 - LTR16B2 LTR ERVL -68 394 7 2 1767 513 0 0 0 chr3 155022185 155022242 -4577541 + (TA)n Simple_repeat Simple_repeat 2 58 0 2 1767 337 353 39 13 chr3 155022309 155022464 -4577319 - MLT1G LTR MaLR -19 572 414 2 1767 198 297 70 35 chr3 155022912 155023027 -4576756 + MIR SINE MIR 82 200 -62 2 1767 1876 60 20 8 chr3 155023793 155024047 -4575736 + L1Md_F2 LINE L1 6326 6582 0 2 1767 243 88 0 0 chr3 155024624 155024658 -4575125 + (TATG)n Simple_repeat Simple_repeat 2 35 0 3 1767 336 297 130 73 chr3 155024779 155024808 -4574975 - Lx9 LINE L1 -100 7544 7518 3 1767 243 0 0 0 chr3 155024808 155024835 -4574948 + (CA)n Simple_repeat Simple_repeat 2 28 0 3 1767 336 297 130 73 chr3 155024835 155025259 -4574524 - Lx9 LINE L1 -127 7517 7065 3 1767 276 77 0 0 chr3 155025460 155025499 -4574284 + (GA)n Simple_repeat Simple_repeat 1 39 0 3 1767 284 0 28 0 chr3 155025753 155025789 -4573994 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 3 1767 1333 215 9 9 chr3 155025903 155026173 -4573610 + ORR1C1 LTR MaLR 1 257 -110 3 1767 988 74 80 7 chr3 155026173 155026323 -4573460 - L1_Mus2 LINE L1 -1 6565 6405 3 1767 1074 265 17 131 chr3 155026323 155026464 -4573319 + ORR1C1 LTR MaLR 258 365 -2 3 1767 410 141 39 0 chr3 155026466 155026544 -4573239 + ORR1C1-int LTR MaLR 1 81 -1289 3 1767 276 242 0 15 chr3 155026555 155026622 -4573161 + ORR1B1 LTR MaLR 329 394 0 3 1767 668 232 29 42 chr3 155026750 155026952 -4572831 + B3 SINE B2 1 195 0 3 1767 331 0 82 0 chr3 155027536 155027585 -4572198 + (TTTTTG)n Simple_repeat Simple_repeat 2 54 0 3 1767 467 82 14 0 chr3 155027895 155027968 -4571815 + (CA)n Simple_repeat Simple_repeat 1 74 0 4 1767 227 245 123 0 chr3 155027973 155028079 -4571704 + L1MB4 LINE L1 6056 6174 -6 4 1767 260 300 73 7 chr3 155030574 155030725 -4569058 + L1_Rod LINE L1 3986 4146 -1701 4 1767 761 297 5 0 chr3 155030764 155030973 -4568810 + B3 SINE B2 1 210 -6 4 1767 426 328 78 22 chr3 155031020 155031288 -4568495 + L1M2 LINE L1 5007 5289 -854 4 1767 404 143 12 0 chr3 155031379 155031463 -4568320 + (CA)n Simple_repeat Simple_repeat 1 85 0 4 1767 1161 239 102 17 chr3 155031705 155032038 -4567745 + MTD LTR MaLR 46 405 -14 4 1767 806 208 12 18 chr3 155032131 155032302 -4567481 + B2_Mm2 SINE B2 2 171 -24 4 1767 761 228 147 0 chr3 155032790 155032974 -4566809 - B3 SINE B2 -1 215 5 4 1767 182 37 0 36 chr3 155033158 155033186 -4566597 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 4 1767 239 261 0 0 chr3 155033517 155033586 -4566197 - L1M4 LINE L1 -1714 4432 4364 5 1767 2179 178 158 32 chr3 155033633 155034127 -4565656 - RMER19B LTR ERVK 0 902 347 5 1767 521 303 143 73 chr3 155034417 155034751 -4565032 - L1M4 LINE L1 -2366 3780 3419 5 1767 3221 68 0 0 chr3 155034751 155035151 -4564632 - MTB LTR MaLR 0 400 1 5 1767 521 303 143 73 chr3 155035151 155035403 -4564380 - L1M4 LINE L1 -2728 3418 3154 5 1767 319 354 135 28 chr3 155035496 155036037 -4563746 - L1M4 LINE L1 -3145 3001 2403 5 1767 238 238 35 12 chr3 155036093 155036178 -4563605 - L1M4 LINE L1 -3820 2326 2240 5 1767 393 117 0 0 chr3 155036286 155036346 -4563437 + (TA)n Simple_repeat Simple_repeat 2 61 0 5 1767 13806 161 2 148 chr3 155038052 155038132 -4561651 + L1Md_F2 LINE L1 2391 2470 -3416 5 1767 1567 47 0 10 chr3 155038132 155038326 -4561457 + B2_Mm1a SINE B2 1 192 -1 5 1767 13806 161 2 148 chr3 155038326 155039576 -4560207 + L1Md_F2 LINE L1 2471 3185 -2701 5 1767 7975 44 6 8 chr3 155039576 155040576 -4559207 + L1Md_F3 LINE L1 5587 6584 0 5 1767 16949 79 1 1 chr3 155040576 155042989 -4556794 + L1Md_F2 LINE L1 3183 5588 -298 5 1767 8090 43 2 0 chr3 155042990 155043970 -4555813 + L1Md_F2 LINE L1 5587 6568 -14 5 1767 848 271 40 22 chr3 155044323 155044595 -4555188 - B4 SINE B4 -14 278 2 5 1767 22 35 0 0 chr3 155044816 155044845 -4554938 + AT_rich Low_complexity Low_complexity 1 29 0 5 1767 347 237 63 21 chr3 155045790 155045885 -4553898 + B1F SINE Alu 51 149 0 5 1767 773 71 18 0 chr3 155046235 155046347 -4553436 + (TTTC)n Simple_repeat Simple_repeat 3 116 0 6 1767 508 232 38 76 chr3 155046347 155046557 -4553226 - RMER17C LTR ERVK -139 271 70 6 1767 2211 241 60 26 chr3 155047624 155048417 -4551366 - RMER1B Other Other -45 1021 107 6 1767 21 0 0 0 chr3 155048475 155048496 -4551287 + AT_rich Low_complexity Low_complexity 1 21 0 6 1767 443 350 27 20 chr3 155048517 155048653 -4551130 + B1F1 SINE Alu 1 139 -10 6 1767 396 59 0 0 chr3 155048653 155048704 -4551079 + (TGAA)n Simple_repeat Simple_repeat 3 53 0 6 1767 1777 197 20 11 chr3 155048729 155049078 -4550705 + ORR1B1 LTR MaLR 35 386 -8 6 1767 438 20 0 0 chr3 155050009 155050060 -4549723 + (TG)n Simple_repeat Simple_repeat 1 51 0 6 1767 722 141 8 0 chr3 155050178 155050306 -4549477 + (TTCC)n Simple_repeat Simple_repeat 2 130 0 6 1767 450 0 0 0 chr3 155050306 155050356 -4549427 + (TTTA)n Simple_repeat Simple_repeat 2 51 0 6 1767 586 277 0 33 chr3 155050360 155050513 -4549270 - B1_Mur4 SINE Alu 0 150 3 7 1767 246 252 15 146 chr3 155050399 155050529 -4549254 - MT2B LTR ERVL -338 263 151 7 1767 857 267 5 5 chr3 155050560 155050767 -4549016 + B3 SINE B2 8 214 -2 7 1767 327 49 0 0 chr3 155052068 155052109 -4547674 + (TC)n Simple_repeat Simple_repeat 2 42 0 7 1767 428 260 9 19 chr3 155052117 155052223 -4547560 - ID_B1 SINE B4 -17 207 103 7 1767 224 299 0 29 chr3 155053813 155053882 -4545901 - B3 SINE B2 -149 67 1 7 1767 240 59 0 0 chr3 155054139 155054173 -4545610 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 7 1767 380 303 75 8 chr3 155054674 155054807 -4544976 + B1F SINE Alu 8 149 0 7 1767 297 235 0 0 chr3 155054900 155054985 -4544798 + (CA)n Simple_repeat Simple_repeat 2 86 0 7 1767 400 330 0 0 chr3 155055416 155055525 -4544258 - PB1D7 SINE Alu -6 114 6 7 1767 288 70 0 0 chr3 155055553 155055596 -4544187 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 8 1767 1460 143 4 4 chr3 155055599 155055844 -4543939 - Lx LINE L1 -12 6642 6398 8 1767 286 331 110 21 chr3 155056003 155056148 -4543635 + RSINE1 SINE B4 8 165 0 8 1767 198 0 0 0 chr3 155056148 155056170 -4543613 + (CA)n Simple_repeat Simple_repeat 1 22 0 8 1767 394 59 0 0 chr3 155056223 155056274 -4543509 + HAL1-3A_ME LINE L1 1976 2026 -832 8 1767 222 37 0 0 chr3 155056315 155056342 -4543441 + (CA)n Simple_repeat Simple_repeat 2 28 0 8 1767 25 0 0 0 chr3 155056343 155056368 -4543415 + AT_rich Low_complexity Low_complexity 1 25 0 8 1767 236 55 35 35 chr3 155056452 155056509 -4543274 + (TTTG)n Simple_repeat Simple_repeat 1 57 0 8 1768 180 0 0 0 chr3 155058347 155058367 -4541416 + (TTA)n Simple_repeat Simple_repeat 2 21 0 8 1768 27 29 0 0 chr3 155060307 155060341 -4539442 + AT_rich Low_complexity Low_complexity 1 34 0 8 1768 1044 79 0 35 chr3 155060604 155060749 -4539034 + B1_Mm SINE Alu 1 140 -7 9 1768 402 176 0 0 chr3 155060959 155061044 -4538739 + CT-rich Low_complexity Low_complexity 2 86 0 9 1768 23 0 0 0 chr3 155061820 155061843 -4537940 + AT_rich Low_complexity Low_complexity 1 23 0 9 1768 488 328 67 11 chr3 155063720 155063899 -4535884 - B3A SINE B2 -9 189 1 9 1768 273 333 122 0 chr3 155065048 155065138 -4534645 + RSINE1 SINE B4 4 104 -61 9 1768 369 0 0 0 chr3 155065186 155065227 -4534556 + (CA)n Simple_repeat Simple_repeat 2 42 0 9 1768 28 91 0 0 chr3 155065672 155065749 -4534034 + AT_rich Low_complexity Low_complexity 1 77 0 9 1768 27 0 0 0 chr3 155067233 155067260 -4532523 + AT_rich Low_complexity Low_complexity 1 27 0 9 1768 4481 63 5 0 chr3 155067279 155067962 -4531821 - L1Md_F2 LINE L1 -430 6152 5461 9 1768 5961 67 1 1 chr3 155067956 155068735 -4531048 + L1Md_F2 LINE L1 4677 5455 -428 9 1768 233 297 63 63 chr3 155069156 155069379 -4530404 - Lx9 LINE L1 -26 7618 7396 9 1768 214 137 0 73 chr3 155070678 155070733 -4529050 + T-rich Low_complexity Low_complexity 3 53 0 1 1768 408 20 0 0 chr3 155071409 155071458 -4528325 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 1768 22 0 0 0 chr3 155072652 155072674 -4527109 + AT_rich Low_complexity Low_complexity 1 22 0 1 1768 342 303 0 39 chr3 155072706 155072833 -4526950 + CT-rich Low_complexity Low_complexity 5 126 0 1 1768 346 376 108 32 chr3 155074148 155074464 -4525319 + MLT1E2 LTR MaLR 101 440 -187 1 1768 611 352 73 94 chr3 155075298 155075540 -4524243 + MLT1F2 LTR MaLR 1 251 -309 1 1768 285 51 0 0 chr3 155075540 155075579 -4524204 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 1768 611 352 73 94 chr3 155075579 155075897 -4523886 + MLT1F2 LTR MaLR 252 549 -11 1 1768 321 299 0 0 chr3 155076123 155076368 -4523415 + (TG)n Simple_repeat Simple_repeat 1 245 0 1 1768 23 78 0 0 chr3 155076565 155076616 -4523167 + AT_rich Low_complexity Low_complexity 1 51 0 1 1768 249 310 0 0 chr3 155077223 155077294 -4522489 - L1MC3 LINE L1 -307 7478 7408 1 1768 412 291 189 57 chr3 155077619 155077657 -4522126 - ORR1E LTR MaLR 0 359 321 1 1768 279 0 0 0 chr3 155077657 155077688 -4522095 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1 1768 412 291 189 57 chr3 155077688 155077966 -4521817 - ORR1E LTR MaLR -39 320 2 1 1768 24 0 0 0 chr3 155080311 155080335 -4519448 + AT_rich Low_complexity Low_complexity 1 24 0 1 1768 22 56 0 0 chr3 155080395 155080431 -4519352 + AT_rich Low_complexity Low_complexity 1 36 0 1 1768 878 156 6 0 chr3 155081324 155081491 -4518292 - L1_Mus4 LINE L1 0 6636 6469 1 1768 313 40 39 20 chr3 155081618 155081627 -4518156 + (TTTCC)n Simple_repeat Simple_repeat 1 9 0 1 1768 1347 72 0 0 chr3 155081627 155081807 -4517976 + (TTCCC)n Simple_repeat Simple_repeat 1 180 0 1 1768 313 40 39 20 chr3 155081807 155081848 -4517935 + (TTTCC)n Simple_repeat Simple_repeat 3 45 0 1 1768 22 0 0 0 chr3 155081848 155081870 -4517913 + AT_rich Low_complexity Low_complexity 1 22 0 1 1768 637 273 0 0 chr3 155081871 155082014 -4517769 - B1_Mur4 SINE Alu -7 143 1 1 1768 2251 283 76 27 chr3 155082494 155083319 -4516464 + RCHARR1 DNA MER1_type 77 940 -34 1 1768 2362 168 149 32 chr3 155083319 155083842 -4515941 + RLTR31A_Mm LTR ERVK 1 584 0 1 1768 2251 283 76 27 chr3 155083842 155083872 -4515911 + RCHARR1 DNA MER1_type 941 973 -1 1 1768 1114 216 54 30 chr3 155084397 155084706 -4515077 + MTD LTR MaLR 95 405 -14 1 1768 652 212 8 0 chr3 155084770 155084888 -4514895 + ETnERV2-int LTR ERVK 7070 7188 -218 1 1768 8439 118 18 19 chr3 155085905 155086987 -4512796 - Lx3_Mus LINE L1 -8 7001 5917 1 1768 647 0 28 37 chr3 155086987 155087094 -4512689 + (TTCTC)n Simple_repeat Simple_repeat 5 110 0 1 1768 8439 118 18 19 chr3 155087094 155087338 -4512445 - Lx3_Mus LINE L1 -1093 5916 5676 1 1768 12613 78 20 30 chr3 155087338 155089210 -4510573 + Lx3_Mus LINE L1 3842 5694 -192 1 1768 246 256 31 62 chr3 155089595 155089724 -4510059 + RMER17A2 LTR ERVK 249 373 -533 1 1768 531 0 0 0 chr3 155090329 155090388 -4509395 + (TG)n Simple_repeat Simple_repeat 1 59 0 1 1768 465 19 0 0 chr3 155090388 155090441 -4509342 + (GA)n Simple_repeat Simple_repeat 1 54 0 1 1768 548 260 169 13 chr3 155091224 155091452 -4508331 - B4A SINE B4 -23 269 6 1 1768 821 260 124 56 chr3 155094157 155094512 -4505271 - MTEa LTR MaLR 0 379 1 1 1768 369 299 93 46 chr3 155094874 155095025 -4504758 - RSINE1 SINE B4 -2 163 6 1 1768 463 180 21 21 chr3 155096022 155096164 -4503619 + (CATATA)n Simple_repeat Simple_repeat 6 147 0 1 1768 236 150 66 77 chr3 155096177 155096358 -4503425 + (CATATA)n Simple_repeat Simple_repeat 1 179 0 1 1768 260 139 98 30 chr3 155096178 155096311 -4503472 + (TA)n Simple_repeat Simple_repeat 2 143 0 1 1768 224 140 0 39 chr3 155096428 155096480 -4503303 + (TATAA)n Simple_repeat Simple_repeat 5 54 0 1 1768 609 348 147 28 chr3 155098610 155098997 -4500786 + MER70A LTR ERVL 2 434 -38 1 1768 290 310 0 57 chr3 155099927 155100033 -4499750 + B3A SINE B2 4 103 -95 1 1768 204 132 0 26 chr3 155100405 155100444 -4499339 + (TG)n Simple_repeat Simple_repeat 2 39 0 1 1768 297 271 0 0 chr3 155103151 155103221 -4496562 - MER5A1 DNA MER1_type 0 166 97 1 1768 1274 254 85 30 chr3 155103906 155104272 -4495511 + MTD LTR MaLR 13 398 -21 1 1768 215 79 26 0 chr3 155104324 155104362 -4495421 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 1 1768 732 70 120 0 chr3 155104525 155104605 -4495178 + L1_Mus3 LINE L1 6478 6567 -71 1 1768 195 69 0 0 chr3 155104605 155104634 -4495149 + (TTTG)n Simple_repeat Simple_repeat 4 32 0 1 1768 732 70 120 0 chr3 155104634 155104695 -4495088 + L1_Mus3 LINE L1 6568 6635 -3 1 1768 216 0 0 0 chr3 155107171 155107195 -4492588 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1 1768 304 313 58 50 chr3 155107260 155107381 -4492402 - ORR1E LTR MaLR -5 374 253 1 1768 336 308 80 84 chr3 155107395 155107608 -4492175 - ORR1E LTR MaLR -121 238 27 1 1768 282 95 0 0 chr3 155109639 155109681 -4490102 + (CA)n Simple_repeat Simple_repeat 2 43 0 1 1768 348 326 54 43 chr3 155111418 155111770 -4488013 - L1ME3B LINE L1 -278 5962 5607 1 1768 537 58 0 0 chr3 155112793 155112862 -4486921 + (TG)n Simple_repeat Simple_repeat 2 70 0 1 1768 210 71 0 0 chr3 155113782 155113810 -4485973 + (TTCC)n Simple_repeat Simple_repeat 2 29 0 1 1768 962 114 17 17 chr3 155113811 155113990 -4485793 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 1 1768 399 41 0 0 chr3 155113997 155114046 -4485737 + (TCCC)n Simple_repeat Simple_repeat 1 49 0 1 1768 546 16 0 0 chr3 155114047 155114110 -4485673 + (TTTC)n Simple_repeat Simple_repeat 4 66 0 1 1768 1494 258 69 2 chr3 155114136 155114410 -4485373 - Lx6 LINE L1 -26 7434 7148 1 1768 327 49 0 0 chr3 155114410 155114451 -4485332 + (CAAA)n Simple_repeat Simple_repeat 2 42 0 1 1768 1494 258 69 2 chr3 155114451 155114595 -4485188 - Lx6 LINE L1 -313 7147 6990 1 1768 27 62 0 0 chr3 155114775 155114823 -4484960 + AT_rich Low_complexity Low_complexity 1 48 0 1 1768 779 37 0 0 chr3 155114835 155114943 -4484840 - L1Md_T LINE L1 0 6582 6475 1 1768 6346 37 3 0 chr3 155114943 155115912 -4483871 - L1Md_T LINE L1 -223 6359 5415 1 1768 251 26 0 73 chr3 155117473 155117514 -4482269 + (T)n Simple_repeat Simple_repeat 1 38 0 1 1768 527 264 43 7 chr3 155117713 155117854 -4481929 - B1F2 SINE Alu -1 148 3 1 1768 1214 55 0 0 chr3 155118111 155118257 -4481526 - B1_Mm SINE Alu 0 147 2 1 1768 440 252 80 18 chr3 155118311 155118424 -4481359 + B3A SINE B2 1 120 -78 1 1768 762 157 0 0 chr3 155118427 155118567 -4481216 + (TA)n Simple_repeat Simple_repeat 2 141 0 1 1768 1437 214 100 3 chr3 155120583 155120902 -4478881 + Lx5 LINE L1 6698 7047 -3 1 1768 282 143 0 0 chr3 155121886 155121935 -4477848 + (TTA)n Simple_repeat Simple_repeat 2 50 0 1 1768 236 53 0 26 chr3 155122360 155122399 -4477384 + (CAAAA)n Simple_repeat Simple_repeat 3 40 0 1 1768 287 338 34 27 chr3 155123445 155123591 -4476192 - B4 SINE B4 -138 154 8 1 1768 686 286 93 5 chr3 155123583 155123797 -4475986 - B4A SINE B4 -58 234 2 1 1768 265 259 124 44 chr3 155126048 155126161 -4473622 + MER21B LTR ERV1 1 122 -741 1 1768 672 274 131 67 chr3 155126331 155126628 -4473155 - MTD LTR MaLR -18 401 86 1 1768 940 186 5 11 chr3 155127157 155127347 -4472436 - Lx4B LINE L1 -380 6678 6490 1 1768 877 134 6 13 chr3 155128322 155128481 -4471302 + CT-rich Low_complexity Low_complexity 1 158 0 1 1768 287 394 16 0 chr3 155128933 155129060 -4470723 - ID_B1 SINE B4 -3 221 93 1 1768 474 276 45 80 chr3 155129110 155129374 -4470409 - L1MC4 LINE L1 -5081 1134 880 1 1768 981 62 0 0 chr3 155129916 155130045 -4469738 + (CA)n Simple_repeat Simple_repeat 2 130 0 1 1768 427 243 84 0 chr3 155130093 155130200 -4469583 - B1F SINE Alu -7 142 27 1 1768 233 346 30 15 chr3 155131049 155131181 -4468602 - LTR80A LTR ERVL -2 581 448 1 1768 251 148 48 16 chr3 155131651 155131713 -4468070 + A-rich Low_complexity Low_complexity 3 66 0 1 1768 700 348 98 18 chr3 155132940 155133005 -4466778 - MTC LTR MaLR 0 421 350 1 1768 336 34 17 33 chr3 155133005 155133065 -4466718 + (TTTG)n Simple_repeat Simple_repeat 2 60 0 1 1768 700 348 98 18 chr3 155133065 155133385 -4466398 - MTC LTR MaLR -72 349 6 1 1768 379 338 119 46 chr3 155133419 155133832 -4465951 - L1ME3 LINE L1 -103 6059 5617 1 1768 561 296 21 26 chr3 155133849 155134043 -4465740 - B3A SINE B2 -5 193 1 1 1768 5086 159 15 7 chr3 155134404 155135402 -4464381 - L1_Mur2 LINE L1 -1439 4438 3433 1 1768 3923 117 20 43 chr3 155135411 155136064 -4463719 - RMER17B LTR ERVK 0 958 321 1 1768 351 258 35 23 chr3 155136186 155136357 -4463426 - L1_Rod LINE L1 -2942 2905 2733 1 1768 396 0 0 0 chr3 155136896 155136940 -4462843 + (TA)n Simple_repeat Simple_repeat 2 45 0 1 1768 7043 73 12 1 chr3 155136940 155137986 -4461797 - L1Md_F2 LINE L1 -30 6552 5495 1 1768 4065 80 5 32 chr3 155137989 155138611 -4461172 + L1Md_F2 LINE L1 4883 5487 -396 1 1768 5611 61 1 1 chr3 155139463 155140174 -4459609 - L1Md_F2 LINE L1 -12 6570 5860 1 1768 371 217 0 115 chr3 155140306 155140410 -4459373 + MT2B LTR ERVL 173 264 -337 1 1768 988 56 0 0 chr3 155140319 155140445 -4459338 + B1_Mm SINE Alu 22 147 0 1 1768 246 105 0 0 chr3 155140445 155140483 -4459300 + (A)n Simple_repeat Simple_repeat 1 38 0 1 1768 5282 162 16 32 chr3 155141458 155142519 -4457264 - Lx5 LINE L1 -128 5749 4706 1 1768 4548 228 49 18 chr3 155142512 155143660 -4456123 + Lx5 LINE L1 5745 6927 -123 1 1768 382 215 107 84 chr3 155143660 155143838 -4455945 + Lx4B LINE L1 6871 7052 -6 1 1768 797 310 80 36 chr3 155144309 155145142 -4454641 - L1MC2 LINE L1 -212 6132 5263 1 1768 28 29 0 0 chr3 155145310 155145345 -4454438 + AT_rich Low_complexity Low_complexity 1 35 0 1 1768 380 316 220 0 chr3 155145492 155145669 -4454114 - ID_B1 SINE B4 -2 222 7 1 1768 225 282 36 9 chr3 155145673 155145784 -4453999 - L1MC2 LINE L1 -2065 4081 3968 1 1768 225 270 32 105 chr3 155146341 155146465 -4453318 + LTR45C LTR ERV1 366 480 -59 1 1768 277 450 28 20 chr3 155147396 155147650 -4452133 + LTR16A LTR ERVL 176 431 -20 1 1768 21 0 0 0 chr3 155148768 155148789 -4450994 + AT_rich Low_complexity Low_complexity 1 21 0 1 1768 187 266 46 15 chr3 155149569 155149634 -4450149 - MIRc SINE MIR -114 154 88 1 1768 345 317 10 0 chr3 155149828 155149932 -4449851 - Tigger5 DNA MER2_type -3 2403 2299 1 1768 367 368 48 38 chr3 155149930 155150139 -4449644 - Tigger5 DNA MER2_type -2163 243 38 1 1768 1154 213 89 38 chr3 155150248 155150561 -4449222 - ORR1D1 LTR MaLR -45 329 1 1 1768 337 304 48 36 chr3 155151261 155151429 -4448354 - MLT2B2 LTR ERVL 0 554 384 2 1768 879 269 5 5 chr3 155152176 155152385 -4447398 - B3 SINE B2 -5 211 3 2 1768 21 0 0 0 chr3 155152969 155152990 -4446793 + AT_rich Low_complexity Low_complexity 1 21 0 2 1768 549 0 0 0 chr3 155153108 155153169 -4446614 + (TC)n Simple_repeat Simple_repeat 1 61 0 2 1768 656 289 114 31 chr3 155154755 155155105 -4444678 + MTEa LTR MaLR 1 379 0 2 1768 324 127 0 0 chr3 155155194 155155249 -4444534 + (TG)n Simple_repeat Simple_repeat 2 56 0 2 1768 270 0 0 0 chr3 155156751 155156781 -4443002 + (CAAAA)n Simple_repeat Simple_repeat 1 30 0 2 1768 21 36 0 0 chr3 155157972 155158000 -4441783 + AT_rich Low_complexity Low_complexity 1 28 0 2 1768 343 244 101 77 chr3 155158083 155158252 -4441531 + MIRb SINE MIR 58 230 -38 2 1768 648 307 67 31 chr3 155158470 155158830 -4440953 + Lx8 LINE L1 6972 7344 -129 2 1768 22 0 0 0 chr3 155159222 155159244 -4440539 + AT_rich Low_complexity Low_complexity 1 22 0 2 1768 204 176 0 38 chr3 155159285 155159338 -4440445 + (TG)n Simple_repeat Simple_repeat 1 51 0 2 1768 454 293 78 7 chr3 155159344 155159485 -4440298 - RSINE1 SINE B4 -4 161 11 2 1768 405 0 0 0 chr3 155161307 155161352 -4438431 + (CA)n Simple_repeat Simple_repeat 2 46 0 2 1768 693 90 0 0 chr3 155161352 155161462 -4438321 + (GA)n Simple_repeat Simple_repeat 2 112 0 2 1768 207 105 26 0 chr3 155161591 155161629 -4438154 + (TTTTTG)n Simple_repeat Simple_repeat 4 42 0 2 1768 951 79 21 7 chr3 155161636 155161776 -4438007 - B1_Mm SINE Alu -3 144 3 2 1768 531 0 0 0 chr3 155163386 155163445 -4436338 + (TC)n Simple_repeat Simple_repeat 2 60 0 2 1768 294 29 0 0 chr3 155163445 155163479 -4436304 + (TG)n Simple_repeat Simple_repeat 2 36 0 2 1768 1261 271 126 36 chr3 155167860 155168373 -4431410 - RLTR20A2 LTR ERVK 0 578 1 2 1768 211 301 74 115 chr3 155168874 155169144 -4430639 - L2 LINE L2 -430 2989 2731 2 1768 300 292 135 39 chr3 155169301 155169479 -4430304 - HAL1 LINE L1 -741 1766 1572 2 1768 339 355 33 75 chr3 155169944 155170157 -4429626 + L2 LINE L2 1446 1649 -1770 2 1768 477 0 0 0 chr3 155171273 155171326 -4428457 + (TG)n Simple_repeat Simple_repeat 1 53 0 2 1768 447 19 0 0 chr3 155171326 155171377 -4428406 + (GA)n Simple_repeat Simple_repeat 1 52 0 2 1768 21 0 0 0 chr3 155171434 155171455 -4428328 + AT_rich Low_complexity Low_complexity 1 21 0 2 1768 1194 245 80 3 chr3 155172430 155172803 -4426980 - L1_Mur3 LINE L1 -3147 2733 2332 2 1768 391 189 0 0 chr3 155173162 155173236 -4426547 + Lx7 LINE L1 6090 6163 -1533 2 1768 3986 154 63 98 chr3 155173236 155174108 -4425675 - RMER21B LTR ERV1 0 842 1 2 1768 306 336 47 0 chr3 155174119 155174268 -4425515 + Lx7 LINE L1 6175 6330 -1366 2 1768 3011 264 49 40 chr3 155174303 155175236 -4424547 + Lx7 LINE L1 6314 7255 -441 2 1768 213 196 0 0 chr3 155175245 155175301 -4424482 + (TTG)n Simple_repeat Simple_repeat 2 57 0 2 1768 2469 235 20 10 chr3 155175311 155175908 -4423875 - Lx5 LINE L1 -7 7043 6441 2 1768 2777 124 1 0 chr3 155175905 155176478 -4423305 - Lx2 LINE L1 -1005 5992 5418 2 1768 2717 113 24 22 chr3 155176469 155176930 -4422853 + Lx2 LINE L1 5975 6436 -561 2 1768 1371 140 4 13 chr3 155176975 155177207 -4422576 + Lx2 LINE L1 6765 6994 -3 2 1768 678 235 76 6 chr3 155177207 155177378 -4422405 - Lx5 LINE L1 -597 6453 6271 2 1768 2729 70 0 6 chr3 155177586 155177947 -4421836 - L1Md_F2 LINE L1 -4 6578 6220 2 1768 12643 28 0 1 chr3 155178630 155180884 -4418899 - L1Md_T LINE L1 -1 6581 4329 2 1768 5317 195 50 36 chr3 155181442 155183104 -4416679 - Lx5 LINE L1 -766 6284 4575 2 1768 567 175 8 23 chr3 155183638 155183767 -4416016 + L1_Mur2 LINE L1 4382 4508 -1369 2 1768 930 257 77 17 chr3 155183758 155184173 -4415610 + Lx7 LINE L1 7241 7680 -16 2 1768 226 353 104 25 chr3 155185042 155185397 -4414386 + L1_Rod LINE L1 5453 5835 -12 2 1768 226 176 35 23 chr3 155185434 155185521 -4414262 + (TG)n Simple_repeat Simple_repeat 1 88 0 2 1768 308 113 19 19 chr3 155185526 155185580 -4414203 - HAL1-3A_ME LINE L1 -831 2027 1974 2 1768 253 323 110 10 chr3 155185806 155185906 -4413877 - PB1D10 SINE Alu -5 112 3 2 1768 355 224 23 12 chr3 155187465 155187551 -4412232 - ORR1B2 LTR MaLR 0 394 308 2 1768 3718 67 18 0 chr3 155187551 155188058 -4411725 + L1Md_F2 LINE L1 5071 5586 -297 2 1768 8017 47 5 5 chr3 155188059 155189052 -4410731 + L1Md_F2 LINE L1 5588 6580 -2 2 27 1245 202 81 11 chr3 155189058 155189318 -4410465 - ORR1B2 LTR MaLR -89 278 1 2 1769 24 0 0 0 chr3 155191149 155191173 -4408610 + AT_rich Low_complexity Low_complexity 1 24 0 2 1769 492 246 115 21 chr3 155191538 155191729 -4408054 + B3 SINE B2 3 211 -5 2 1769 423 0 0 0 chr3 155192259 155192306 -4407477 + (CA)n Simple_repeat Simple_repeat 2 48 0 2 1769 180 111 0 0 chr3 155193461 155193488 -4406295 + (TA)n Simple_repeat Simple_repeat 1 27 0 2 1769 680 172 11 11 chr3 155194051 155194227 -4405556 + (TCCA)n Simple_repeat Simple_repeat 1 176 0 2 1769 1093 100 12 0 chr3 155194240 155194410 -4405373 + (TCTA)n Simple_repeat Simple_repeat 3 174 0 2 1769 371 224 9 0 chr3 155194412 155194519 -4405264 + (TCCA)n Simple_repeat Simple_repeat 4 111 0 2 1769 355 322 162 9 chr3 155196279 155196489 -4403294 - B4A SINE B4 -18 274 33 2 1769 21 0 0 0 chr3 155197616 155197637 -4402146 + AT_rich Low_complexity Low_complexity 1 21 0 2 1769 210 171 0 0 chr3 155197855 155197896 -4401887 + (TG)n Simple_repeat Simple_repeat 2 42 0 2 1769 276 382 59 7 chr3 155197920 155198073 -4401710 - RSINE1 SINE B4 -2 163 3 2 1769 252 314 29 88 chr3 155198509 155198645 -4401138 - MTEb LTR MaLR -2 377 250 2 1769 201 211 0 0 chr3 155199010 155199062 -4400721 + (TATG)n Simple_repeat Simple_repeat 4 55 0 2 1769 485 230 12 0 chr3 155199077 155199238 -4400545 + (TATG)n Simple_repeat Simple_repeat 4 166 0 2 1769 382 185 62 0 chr3 155199318 155199399 -4400384 - B4A SINE B4 -13 279 194 2 1769 284 155 0 14 chr3 155199683 155199755 -4400028 + (TAGA)n Simple_repeat Simple_repeat 4 74 0 2 1769 274 107 0 35 chr3 155199810 155199868 -4399915 + (TA)n Simple_repeat Simple_repeat 1 56 0 2 1769 296 219 34 79 chr3 155200224 155200313 -4399470 + B3A SINE B2 3 87 -111 2 1769 247 255 113 33 chr3 155201437 155201587 -4398196 + Charlie8 DNA MER1_type 222 383 -2045 2 1769 241 356 23 0 chr3 155201886 155201973 -4397810 - PB1D10 SINE Alu -8 109 21 2 1769 414 0 0 0 chr3 155202586 155202632 -4397151 + (TG)n Simple_repeat Simple_repeat 2 47 0 2 1769 606 118 0 0 chr3 155203386 155203479 -4396304 + (CA)n Simple_repeat Simple_repeat 2 94 0 2 1769 1243 44 6 0 chr3 155203538 155203696 -4396087 + L1Md_F2 LINE L1 5428 5586 -297 2 1769 8393 39 0 1 chr3 155203696 155204691 -4395092 + L1Md_F2 LINE L1 5587 6580 -2 2 1769 21 36 0 0 chr3 155205836 155205864 -4393919 + AT_rich Low_complexity Low_complexity 1 28 0 2 1769 936 298 37 6 chr3 155206507 155206855 -4392928 + ORR1E LTR MaLR 1 359 0 2 1769 965 127 0 0 chr3 155207318 155207476 -4392307 + L1_Mur2 LINE L1 3689 3846 -2031 2 1769 372 22 0 0 chr3 155207529 155207574 -4392209 + (TG)n Simple_repeat Simple_repeat 2 46 0 2 1769 356 21 21 21 chr3 155209269 155209317 -4390466 - HAL1-3A_ME LINE L1 -835 2023 1976 2 1769 509 194 35 6 chr3 155209324 155209495 -4390288 + (TG)n Simple_repeat Simple_repeat 2 177 0 2 1769 527 183 28 11 chr3 155209552 155209729 -4390054 + (TG)n Simple_repeat Simple_repeat 1 180 0 2 1769 275 343 0 19 chr3 155209753 155209860 -4389923 + CT-rich Low_complexity Low_complexity 2 106 0 2 1769 28 61 0 0 chr3 155212338 155212387 -4387396 + AT_rich Low_complexity Low_complexity 1 49 0 2 1769 664 278 0 20 chr3 155212394 155212541 -4387242 - RSINE1 SINE B4 -19 146 3 2 1769 335 256 0 37 chr3 155213304 155213546 -4386237 + G-rich Low_complexity Low_complexity 1 232 0 2 1769 270 0 0 0 chr3 155214188 155214218 -4385565 + (TTTG)n Simple_repeat Simple_repeat 3 32 0 2 1769 423 0 0 0 chr3 155214613 155214660 -4385123 + (TG)n Simple_repeat Simple_repeat 2 48 0 2 1769 294 231 185 17 chr3 155214930 155215049 -4384734 + MIRc SINE MIR 99 237 -31 2 1769 184 371 38 0 chr3 155215388 155215493 -4384290 - MIR SINE MIR -90 172 64 2 1769 1055 130 11 0 chr3 155215940 155216117 -4383666 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 2 1769 12236 60 2 19 chr3 155216132 155218610 -4381173 - L1Md_F2 LINE L1 -12 6570 4140 2 1769 303 88 32 81 chr3 155218690 155218752 -4381031 - HAL1-3A_ME LINE L1 -827 2031 1973 2 1769 2354 180 60 6 chr3 155219061 155219542 -4380241 + RLTR28 LTR ERVL 1 507 -17 2 1769 214 239 52 111 chr3 155220158 155220285 -4379498 - MIRc SINE MIR -116 152 20 2 1769 510 17 0 0 chr3 155221536 155221595 -4378188 + (CA)n Simple_repeat Simple_repeat 2 60 0 2 1769 3283 203 56 2 chr3 155221874 155222828 -4376955 + Lx5 LINE L1 5309 6321 -729 2 1769 2213 228 112 13 chr3 155222836 155223382 -4376401 + Lx5 LINE L1 6448 7047 -3 2 1769 282 333 30 23 chr3 155223739 155223871 -4375912 + MER121 Unknown Unknown 2 134 -278 2 1769 21 0 0 0 chr3 155224585 155224606 -4375177 + AT_rich Low_complexity Low_complexity 1 21 0 2 1769 198 222 0 0 chr3 155224841 155224895 -4374888 + (CA)n Simple_repeat Simple_repeat 1 54 0 2 1769 213 208 42 0 chr3 155224904 155224952 -4374831 + (CATA)n Simple_repeat Simple_repeat 2 51 0 2 1769 461 299 37 7 chr3 155225262 155225397 -4374386 + B3A SINE B2 42 180 -18 2 1769 21 0 0 0 chr3 155229061 155229082 -4370701 + AT_rich Low_complexity Low_complexity 1 21 0 2 1769 30777 80 12 0 chr3 155231844 155236981 -4362802 + L1Md_F2 LINE L1 387 5585 -298 2 1769 8042 48 1 1 chr3 155236982 155237970 -4361813 + L1Md_F2 LINE L1 5587 6574 -8 2 1769 1061 110 13 0 chr3 155238027 155238181 -4361602 + B2_Mm2 SINE B2 2 157 -38 2 1769 1065 181 29 21 chr3 155238211 155238453 -4361330 - Lx LINE L1 0 6654 6411 2 1769 937 261 24 9 chr3 155239327 155239540 -4360243 + B3 SINE B2 1 216 0 2 1769 351 0 0 0 chr3 155239696 155239735 -4360048 + (A)n Simple_repeat Simple_repeat 1 39 0 2 1769 455 177 0 10 chr3 155240624 155240721 -4359062 + A-rich Low_complexity Low_complexity 4 99 0 2 1769 263 281 22 0 chr3 155240792 155240881 -4358902 + (TG)n Simple_repeat Simple_repeat 2 92 0 2 1769 202 158 26 0 chr3 155241539 155241577 -4358206 + T-rich Low_complexity Low_complexity 2 40 0 2 1769 392 284 57 57 chr3 155242701 155242858 -4356925 + Lx9 LINE L1 6695 6851 -793 2 1769 432 327 63 54 chr3 155242857 155243080 -4356703 + Lx8 LINE L1 6782 7006 -467 3 1769 2496 166 11 4 chr3 155243087 155243541 -4356242 + Lx2 LINE L1 6540 6996 -1 3 1769 3565 100 18 4 chr3 155243549 155244062 -4355721 - L1_Mm LINE L1 -163 5720 5201 3 1769 3972 98 36 10 chr3 155244062 155244669 -4355114 + L1_Mus3 LINE L1 6010 6632 -6 3 1769 195 42 0 0 chr3 155244685 155244709 -4355074 + (CAAA)n Simple_repeat Simple_repeat 3 26 0 3 1769 6042 28 3 0 chr3 155245984 155246691 -4353092 - L1Md_F2 LINE L1 -2 6580 5872 3 1769 237 132 0 0 chr3 155246932 155246970 -4352813 + (TTG)n Simple_repeat Simple_repeat 2 39 0 3 1769 5066 7 0 0 chr3 155247796 155248363 -4351420 - L1Md_A LINE L1 0 6582 6016 3 1769 21 36 0 0 chr3 155249294 155249322 -4350461 + AT_rich Low_complexity Low_complexity 1 28 0 3 1769 26 74 0 0 chr3 155249394 155249448 -4350335 + AT_rich Low_complexity Low_complexity 1 54 0 3 1769 919 61 8 8 chr3 155250748 155250880 -4348903 + (TC)n Simple_repeat Simple_repeat 2 133 0 3 1769 189 74 0 0 chr3 155251342 155251369 -4348414 + (CA)n Simple_repeat Simple_repeat 2 28 0 3 1769 22 56 0 0 chr3 155251895 155251931 -4347852 + AT_rich Low_complexity Low_complexity 1 36 0 3 1769 275 360 93 57 chr3 155252116 155252416 -4347367 + ORR1E LTR MaLR 44 354 -5 3 1769 346 323 103 27 chr3 155253001 155253224 -4346559 - RMER15 LTR ERVL 0 575 336 3 1769 180 234 60 83 chr3 155253612 155253696 -4346087 - L2a LINE L2 -65 3361 3280 3 1769 684 0 0 0 chr3 155253903 155253979 -4345804 + (TC)n Simple_repeat Simple_repeat 1 76 0 3 1769 1339 222 14 0 chr3 155254249 155254524 -4345259 - MTD LTR MaLR -129 290 12 3 1769 290 283 0 11 chr3 155255261 155255354 -4344429 - Lx9 LINE L1 -8 7636 7545 3 1769 354 80 0 0 chr3 155255354 155255404 -4344379 + (TA)n Simple_repeat Simple_repeat 2 51 0 3 1769 291 208 52 122 chr3 155255405 155255520 -4344263 - Lx9 LINE L1 -187 7457 7351 3 1769 1208 250 108 43 chr3 155255517 155255634 -4344149 + Lx9 LINE L1 6953 7072 -572 3 1769 200 34 0 33 chr3 155255634 155255664 -4344119 + (CATATA)n Simple_repeat Simple_repeat 4 32 0 3 1769 1208 250 108 43 chr3 155255664 155255918 -4343865 + Lx9 LINE L1 7073 7348 -296 3 1769 564 15 0 0 chr3 155255939 155256004 -4343779 + (TTTC)n Simple_repeat Simple_repeat 3 67 0 3 1769 1079 103 0 0 chr3 155256043 155256188 -4343595 - B1_Mm SINE Alu 0 147 3 3 1769 271 184 18 55 chr3 155257373 155257482 -4342301 + GA-rich Low_complexity Low_complexity 4 108 0 3 1769 2402 203 70 51 chr3 155259150 155259763 -4340020 - Lx9 LINE L1 -519 7125 6501 3 1769 1063 102 0 0 chr3 155260193 155260330 -4339453 + B1_Mus2 SINE Alu 2 138 -9 3 1769 761 0 11 0 chr3 155260330 155260419 -4339364 + (CAAAA)n Simple_repeat Simple_repeat 2 91 0 3 1769 6956 106 36 5 chr3 155261861 155263242 -4336541 - L1_Mus3 LINE L1 -10 6628 5218 3 1769 12123 123 26 6 chr3 155263241 155265204 -4334579 + L1_Mm LINE L1 2292 4294 -1589 3 1769 279 328 0 39 chr3 155265523 155265704 -4334079 + (CATATA)n Simple_repeat Simple_repeat 1 174 0 3 1769 576 42 0 0 chr3 155266275 155266346 -4333437 + (TG)n Simple_repeat Simple_repeat 2 72 0 3 1769 5541 147 59 54 chr3 155268843 155270033 -4329750 + Lx3_Mus LINE L1 5479 6662 -347 3 1769 1128 60 0 0 chr3 155270042 155270191 -4329592 - L1Md_A LINE L1 0 6582 6434 3 1769 1871 131 40 0 chr3 155270191 155270489 -4329294 + Lx3_Mus LINE L1 6681 6990 -19 3 1769 422 272 65 195 chr3 155271675 155271748 -4328035 + B1F SINE Alu 2 84 -65 3 1769 1121 159 53 0 chr3 155271748 155271956 -4327827 + Lx4A LINE L1 6840 7058 0 3 1769 422 272 65 195 chr3 155271956 155272051 -4327732 + B1F SINE Alu 85 148 -1 3 1769 227 299 56 33 chr3 155272180 155272270 -4327513 - Charlie13b DNA Charlie -305 207 116 3 1769 3874 175 45 3 chr3 155273287 155274197 -4325586 - Lx3C LINE L1 -12 6997 5976 3 1769 307 106 0 0 chr3 155274194 155274241 -4325542 + Lx3C LINE L1 5938 5984 -992 3 1769 1295 93 10 10 chr3 155274295 155274490 -4325293 - L1_Mus2 LINE L1 -3 6563 6369 3 1769 465 19 0 0 chr3 155275416 155275470 -4324313 + (TC)n Simple_repeat Simple_repeat 2 55 0 3 1769 297 0 0 0 chr3 155275470 155275502 -4324281 + (TG)n Simple_repeat Simple_repeat 2 34 0 3 1769 210 143 0 0 chr3 155275502 155275537 -4324246 + (TTTC)n Simple_repeat Simple_repeat 3 37 0 3 1769 21 0 0 0 chr3 155276046 155276067 -4323716 + AT_rich Low_complexity Low_complexity 1 21 0 3 1769 1109 123 6 0 chr3 155276532 155276711 -4323072 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 3 1769 563 328 116 41 chr3 155276795 155277095 -4322688 - L1MD3 LINE L1 -108 7887 7570 3 1769 1094 82 0 27 chr3 155277095 155277245 -4322538 - B1_Mus1 SINE Alu 0 148 3 3 1769 563 328 116 41 chr3 155277245 155277481 -4322302 - L1MD3 LINE L1 -426 7569 7311 3 1769 1441 217 43 81 chr3 155277510 155277976 -4321807 + RMER16 LTR ERVK 3 533 0 3 1769 242 304 51 20 chr3 155278053 155278248 -4321535 - L1MD3 LINE L1 -794 7201 7001 3 1769 518 274 45 37 chr3 155278349 155278595 -4321188 - RLTR15 LTR ERVK -111 248 1 3 1769 4625 217 74 7 chr3 155278596 155279756 -4320027 - MYSERV-int LTR ERVK -2 6548 5311 3 1769 565 294 5 43 chr3 155279764 155279952 -4319831 - RMER4A LTR ERVK -35 431 251 3 1769 1467 261 33 43 chr3 155279952 155280412 -4319371 - MYSERV-int LTR ERVK -1424 5126 4672 3 1769 1092 190 70 4 chr3 155280448 155280675 -4319108 - Lx3C LINE L1 -607 6369 6128 3 1769 427 286 62 78 chr3 155280823 155281145 -4318638 - RLTR15 LTR ERVK -9 350 34 3 1769 792 256 14 41 chr3 155281492 155281712 -4318071 + B3 SINE B2 3 216 0 3 1769 1789 79 4 0 chr3 155281904 155282145 -4317638 + L1_Mus2 LINE L1 6324 6565 -1 3 1769 335 346 101 56 chr3 155282529 155282866 -4316917 - L1MD LINE L1 -897 5249 4898 3 1769 553 336 12 8 chr3 155282961 155283207 -4316576 - L1M2 LINE L1 -1093 5050 4804 3 1769 441 97 0 0 chr3 155283207 155283279 -4316504 + (CA)n Simple_repeat Simple_repeat 2 73 0 3 1769 31 0 0 0 chr3 155283412 155283443 -4316340 + AT_rich Low_complexity Low_complexity 1 31 0 3 1769 23 0 0 0 chr3 155283618 155283641 -4316142 + AT_rich Low_complexity Low_complexity 1 23 0 3 1769 335 371 44 11 chr3 155283755 155283935 -4315848 + L1MDa LINE L1 108 293 -6340 3 1769 229 189 38 0 chr3 155284654 155284707 -4315076 + A-rich Low_complexity Low_complexity 6 60 0 3 1769 791 315 43 63 chr3 155284709 155285245 -4314538 + L1MDa LINE L1 1548 2072 -4561 3 1769 469 301 61 25 chr3 155285352 155285550 -4314233 - Lx9 LINE L1 -981 6663 6459 3 1769 245 299 58 65 chr3 155285602 155285756 -4314027 + L2a LINE L2 3272 3424 -2 3 1769 471 207 0 0 chr3 155286164 155286246 -4313537 + MTE2b LTR MaLR 1 82 -297 3 1769 2365 104 33 24 chr3 155286264 155286672 -4313111 - RMER16 LTR ERVK -31 502 1 3 1769 734 324 37 15 chr3 155286683 155286956 -4312827 + MTE2b LTR MaLR 96 374 -5 3 1769 217 220 34 0 chr3 155287479 155287538 -4312245 + (TA)n Simple_repeat Simple_repeat 2 62 0 3 1769 21 36 0 0 chr3 155287550 155287578 -4312205 + AT_rich Low_complexity Low_complexity 1 28 0 3 1769 312 70 0 0 chr3 155287590 155287633 -4312150 + (TC)n Simple_repeat Simple_repeat 1 43 0 3 1769 474 132 0 0 chr3 155287632 155287708 -4312075 + (CA)n Simple_repeat Simple_repeat 1 76 0 3 1769 1596 172 20 7 chr3 155288637 155288942 -4310841 - Lx2B LINE L1 0 7000 6692 3 1769 4451 150 51 41 chr3 155288940 155289539 -4310244 - Lx2A1 LINE L1 -564 6444 5842 3 1769 1099 82 0 13 chr3 155289539 155289688 -4310095 - B1_Mus1 SINE Alu -1 147 1 3 1769 4451 153 38 49 chr3 155289688 155290065 -4309718 - Lx2A1 LINE L1 -1167 5841 5453 3 1769 511 322 7 7 chr3 155290077 155290221 -4309562 - B3 SINE B2 -68 148 5 3 1769 397 203 40 28 chr3 155293504 155293681 -4306102 + (TA)n Simple_repeat Simple_repeat 2 180 0 3 1769 334 389 0 11 chr3 155294198 155294380 -4305403 + (TG)n Simple_repeat Simple_repeat 1 180 0 3 1769 21 0 0 0 chr3 155295523 155295544 -4304239 + AT_rich Low_complexity Low_complexity 1 21 0 3 1769 337 238 71 53 chr3 155296355 155296524 -4303259 + L1MEf LINE L1 866 1037 -5163 3 1769 253 352 0 32 chr3 155296751 155296845 -4302938 - Lx8 LINE L1 -155 7318 7228 3 1769 575 299 71 0 chr3 155296854 155297038 -4302745 + Lx8 LINE L1 6960 7156 -317 3 1769 283 308 107 24 chr3 155297470 155297797 -4301986 + L1MA7 LINE L1 5657 6010 -281 3 1769 373 279 40 24 chr3 155297875 155298000 -4301783 - MTD LTR MaLR -25 394 268 3 1769 233 248 69 10 chr3 155298221 155298323 -4301460 - L1M5 LINE L1 -476 5703 5596 3 1769 426 20 0 0 chr3 155298627 155298678 -4301105 + (TG)n Simple_repeat Simple_repeat 2 52 0 3 1769 3504 15 2 0 chr3 155298846 155299248 -4300535 + L1Md_F2 LINE L1 5184 5586 -297 3 1769 7783 50 3 22 chr3 155299249 155300257 -4299526 + L1Md_F2 LINE L1 5588 6576 -6 3 1769 776 11 11 0 chr3 155300260 155300353 -4299430 + (GAAA)n Simple_repeat Simple_repeat 2 95 0 3 1769 207 174 43 0 chr3 155302500 155302546 -4297237 + (TA)n Simple_repeat Simple_repeat 1 48 0 3 1769 512 153 22 7 chr3 155302559 155302697 -4297086 + (TA)n Simple_repeat Simple_repeat 2 141 0 3 1769 2108 165 29 18 chr3 155302776 155303158 -4296625 + ORR1B1 LTR MaLR 1 386 -8 3 1769 2164 145 185 77 chr3 155303792 155304413 -4295370 + RMER6C LTR ERVK 3 690 0 3 1769 22 0 0 0 chr3 155305651 155305673 -4294110 + AT_rich Low_complexity Low_complexity 1 22 0 3 1769 252 0 0 0 chr3 155305719 155305747 -4294036 + (GTTTG)n Simple_repeat Simple_repeat 3 30 0 3 1769 707 217 42 0 chr3 155305749 155305892 -4293891 - B1_Mur4 SINE Alu -1 149 1 3 1769 25 31 0 0 chr3 155306568 155306600 -4293183 + AT_rich Low_complexity Low_complexity 1 32 0 3 1769 738 128 0 0 chr3 155306622 155306739 -4293044 + (TCTA)n Simple_repeat Simple_repeat 4 120 0 3 1769 2688 176 33 8 chr3 155307047 155307561 -4292222 - RLTR11A2 LTR ERVK 0 527 1 3 1769 207 0 0 0 chr3 155309603 155309626 -4290157 + (TA)n Simple_repeat Simple_repeat 1 23 0 3 1769 21 36 0 0 chr3 155309635 155309663 -4290120 + AT_rich Low_complexity Low_complexity 1 28 0 3 1769 1014 93 11 23 chr3 155309936 155310111 -4289672 + (TTTC)n Simple_repeat Simple_repeat 4 176 0 3 1769 398 53 18 0 chr3 155310126 155310183 -4289600 + (TTCC)n Simple_repeat Simple_repeat 2 59 0 3 1769 207 0 0 0 chr3 155310209 155310232 -4289551 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 3 1769 265 357 28 7 chr3 155310422 155310563 -4289220 - L1M5 LINE L1 -425 5739 5596 3 1769 21 0 0 0 chr3 155310918 155310939 -4288844 + AT_rich Low_complexity Low_complexity 1 21 0 3 1769 215 93 0 23 chr3 155311227 155311271 -4288512 + (TCTA)n Simple_repeat Simple_repeat 4 46 0 3 1769 904 235 14 24 chr3 155311291 155311500 -4288283 - ORR1D1 LTR MaLR -2 372 166 4 1769 1356 242 19 131 chr3 155311512 155312078 -4287705 + RLTR20B2 LTR ERVK 1 503 -57 4 1769 204 40 0 0 chr3 155312091 155312116 -4287667 + (TTAA)n Simple_repeat Simple_repeat 1 25 0 4 1769 521 274 0 29 chr3 155312131 155312270 -4287513 - ORR1D1 LTR MaLR -232 142 8 4 1769 378 305 129 0 chr3 155312449 155312659 -4287124 - L1MEc LINE L1 -4543 1857 1621 4 1769 583 260 39 28 chr3 155312692 155312870 -4286913 - Lx7 LINE L1 -1396 6300 6121 4 1769 844 262 62 7 chr3 155312873 155313161 -4286622 + Lx7 LINE L1 5831 6134 -1562 4 1769 8665 112 75 4 chr3 155313434 155315507 -4284276 + L1Md_F LINE L1 532 2754 -3129 4 1769 863 74 43 22 chr3 155315508 155315646 -4284137 + L1Md_F2 LINE L1 6442 6582 0 4 1769 351 0 0 0 chr3 155315804 155315843 -4283940 + (CA)n Simple_repeat Simple_repeat 2 40 0 4 1769 314 311 77 42 chr3 155316185 155316353 -4283430 - MLT1E1 LTR MaLR -439 215 42 4 1769 245 229 119 12 chr3 155316373 155316457 -4283326 - L1MEc LINE L1 -5774 626 534 4 1769 7195 128 18 1 chr3 155317263 155318404 -4281379 - L1_Mus2 LINE L1 -82 5801 4642 4 1769 5350 76 4 37 chr3 155318404 155318581 -4281202 + L1_Mus2 LINE L1 5817 5987 -579 4 1769 5168 113 25 30 chr3 155318581 155319393 -4280390 - RLTR13C2 LTR ERVK 0 808 1 4 1769 5350 76 4 37 chr3 155319393 155319991 -4279792 + L1_Mus2 LINE L1 5988 6566 0 4 1770 3169 31 39 0 chr3 155320915 155321296 -4278487 - MTA_Mm LTR MaLR 0 396 1 4 1770 2334 68 68 0 chr3 155321640 155321965 -4277818 + L1Md_F2 LINE L1 6233 6579 -3 4 1770 309 51 0 0 chr3 155321986 155322025 -4277758 + (GAAA)n Simple_repeat Simple_repeat 2 40 0 4 1770 2338 220 59 33 chr3 155323504 155324083 -4275700 - Lx5 LINE L1 -465 6585 5992 4 1770 1401 240 122 15 chr3 155324081 155324483 -4275300 + Lx5 LINE L1 6603 7047 -3 4 1770 512 333 7 26 chr3 155324668 155324819 -4274964 + RSINE1 SINE B4 1 148 -17 4 1770 390 21 0 0 chr3 155324852 155324899 -4274884 + (CA)n Simple_repeat Simple_repeat 2 48 0 4 1770 721 291 86 76 chr3 155326346 155326926 -4272857 + L1MA6 LINE L1 5427 6012 -288 4 1770 328 216 32 64 chr3 155327126 155327220 -4272563 - PB1D10 SINE Alu -12 105 15 4 1770 265 330 68 6 chr3 155327757 155327934 -4271849 - Lx8 LINE L1 -287 7186 6999 4 1770 559 311 67 4 chr3 155327983 155328222 -4271561 - Lx8 LINE L1 -617 6856 6603 4 1770 2059 231 107 26 chr3 155328880 155329043 -4270740 - Lx2B LINE L1 -10 6990 6795 4 1770 2421 59 68 6 chr3 155329043 155329365 -4270418 + ORR1A1 LTR MaLR 1 342 -4 4 1770 2059 231 107 26 chr3 155329365 155329771 -4270012 - Lx2B LINE L1 -206 6794 6375 4 1770 561 310 109 26 chr3 155329771 155330036 -4269747 - ORR1D2 LTR MaLR -83 287 1 4 1770 1711 178 3 3 chr3 155330179 155330489 -4269294 - L1_Mur2 LINE L1 -631 5246 4937 4 1770 1599 232 3 28 chr3 155330486 155330810 -4268973 + Lx5 LINE L1 6600 6915 -135 4 1770 228 346 12 0 chr3 155330810 155330891 -4268892 + PB1D10 SINE Alu 34 115 -2 4 1770 310 359 98 55 chr3 155331922 155332086 -4267697 - MT2A LTR ERVL -213 320 1 4 1770 433 319 28 14 chr3 155332086 155332229 -4267554 - MTEa LTR MaLR -234 145 1 4 1770 22 80 0 0 chr3 155332814 155332864 -4266919 + AT_rich Low_complexity Low_complexity 1 50 0 4 1770 29 0 0 0 chr3 155333059 155333088 -4266695 + AT_rich Low_complexity Low_complexity 1 29 0 4 1770 243 0 0 0 chr3 155334526 155334553 -4265230 + (TG)n Simple_repeat Simple_repeat 2 28 0 4 1770 361 356 54 30 chr3 155334574 155334872 -4264911 + L1MC4 LINE L1 6936 7240 -802 4 1770 268 286 20 10 chr3 155334878 155334977 -4264806 + L1MA4A LINE L1 5827 5926 -377 4 1770 503 215 17 6 chr3 155335167 155335345 -4264438 + (TG)n Simple_repeat Simple_repeat 1 180 0 4 1770 2074 179 39 8 chr3 155336475 155336857 -4262926 + ORR1B1 LTR MaLR 1 394 0 4 1770 666 85 0 0 chr3 155336943 155337037 -4262746 + (GA)n Simple_repeat Simple_repeat 2 95 0 4 1770 22 70 0 0 chr3 155337088 155337131 -4262652 + AT_rich Low_complexity Low_complexity 1 43 0 4 1770 316 238 19 0 chr3 155338415 155338520 -4261263 + (TA)n Simple_repeat Simple_repeat 1 107 0 4 1770 245 266 0 0 chr3 155338520 155338584 -4261199 + (TAGA)n Simple_repeat Simple_repeat 3 66 0 4 1770 758 108 25 0 chr3 155338853 155338973 -4260810 + L1Md_F2 LINE L1 6440 6562 -20 4 1770 1201 116 6 11 chr3 155338973 155339156 -4260627 - B2_Mm2 SINE B2 -13 182 1 4 1770 216 184 0 0 chr3 155339481 155339530 -4260253 + (TTCA)n Simple_repeat Simple_repeat 1 49 0 4 1770 450 0 0 0 chr3 155339674 155339724 -4260059 + (TG)n Simple_repeat Simple_repeat 2 51 0 4 1770 240 35 0 0 chr3 155339731 155339760 -4260023 + (TTTTG)n Simple_repeat Simple_repeat 1 29 0 4 1770 399 293 20 0 chr3 155339762 155339861 -4259922 - B1_Mur2 SINE Alu -15 134 34 4 1770 4453 117 6 1 chr3 155340536 155341197 -4258586 - L1_Mm LINE L1 -19 5864 5201 4 1770 4412 82 11 14 chr3 155341197 155341820 -4257963 + L1_Mus3 LINE L1 6010 6630 -8 4 1770 354 45 0 0 chr3 155341820 155341864 -4257919 + (CAA)n Simple_repeat Simple_repeat 2 45 0 4 1770 1559 220 43 19 chr3 155342164 155342539 -4257244 + ORR1C2 LTR MaLR 1 384 0 4 1770 389 235 5 38 chr3 155344280 155344466 -4255317 + GA-rich Low_complexity Low_complexity 1 180 0 4 1770 353 366 113 31 chr3 155344893 155345538 -4254245 - L1MB8 LINE L1 -164 6014 5317 4 1770 435 68 0 0 chr3 155345558 155345617 -4254166 + (TG)n Simple_repeat Simple_repeat 2 60 0 4 1770 228 111 0 0 chr3 155347226 155347262 -4252521 + (T)n Simple_repeat Simple_repeat 1 36 0 4 1770 231 125 0 0 chr3 155350230 155350270 -4249513 + (ATG)n Simple_repeat Simple_repeat 1 40 0 4 1770 775 319 33 47 chr3 155350854 155351216 -4248567 + Lx8 LINE L1 6779 7135 -338 4 1770 468 310 84 7 chr3 155351217 155351360 -4248423 + B3A SINE B2 2 155 -43 4 1770 1948 152 57 23 chr3 155351447 155351798 -4247985 + RLTR44A LTR ERVK 1 363 -42 4 1770 1837 225 68 20 chr3 155352024 155352464 -4247319 - Lx2B LINE L1 -336 6664 6204 4 1770 1226 213 92 29 chr3 155352454 155352768 -4247015 + Lx2B LINE L1 6649 6982 -18 4 1770 315 177 0 0 chr3 155353461 155353523 -4246260 + CT-rich Low_complexity Low_complexity 2 63 0 4 1770 398 303 38 14 chr3 155354206 155354417 -4245366 - B3 SINE B2 0 216 1 4 1770 253 308 33 0 chr3 155355312 155355432 -4244351 + L1MA4 LINE L1 5812 5935 -365 4 1770 252 247 115 23 chr3 155355720 155355807 -4243976 + L1M2 LINE L1 5825 5919 -270 4 1770 8781 22 0 0 chr3 155355941 155356970 -4242813 - L1_Mm LINE L1 -443 5440 4412 4 1770 2003 21 0 0 chr3 155356970 155357206 -4242577 + L1Md_T LINE L1 6347 6582 0 4 1770 255 302 90 40 chr3 155357708 155357808 -4241975 - ORSL DNA Tip100 -3 272 168 4 1770 187 115 38 19 chr3 155358090 155358143 -4241640 + (CAGAGA)n Simple_repeat Simple_repeat 4 57 0 4 1770 24 32 0 0 chr3 155358251 155358282 -4241501 + AT_rich Low_complexity Low_complexity 1 31 0 4 1770 210 37 0 0 chr3 155358448 155358475 -4241308 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 4 1770 253 336 9 9 chr3 155359412 155359520 -4240263 - RSINE1 SINE B4 -53 112 5 4 1770 297 295 54 0 chr3 155359908 155360010 -4239773 + MLT1A1 LTR MaLR 5 113 -295 4 1770 266 323 88 31 chr3 155360060 155360220 -4239563 + MLT1A1 LTR MaLR 240 408 0 4 1770 21 36 0 0 chr3 155360401 155360429 -4239354 + AT_rich Low_complexity Low_complexity 1 28 0 4 1770 234 0 0 0 chr3 155361087 155361113 -4238670 + (TTG)n Simple_repeat Simple_repeat 2 27 0 4 1770 722 279 180 10 chr3 155361150 155361450 -4238333 - ORR1D2 LTR MaLR -5 365 15 4 1770 1699 193 12 21 chr3 155362598 155362937 -4236846 - RLTR17 LTR ERVK -73 619 284 4 1770 276 223 0 105 chr3 155362950 155363055 -4236728 - RLTR17 LTR ERVK -494 198 105 4 1770 785 351 28 11 chr3 155363503 155363785 -4235998 - B4A SINE B4 -4 288 2 4 1770 403 116 0 17 chr3 155363986 155364060 -4235723 + B1_Mur4 SINE Alu 40 142 -8 4 1770 738 0 0 0 chr3 155364061 155364143 -4235640 + (GAA)n Simple_repeat Simple_repeat 1 82 0 4 1770 252 296 45 0 chr3 155364647 155364735 -4235048 + MLT2D LTR ERVL 56 147 -267 4 1770 1715 131 35 0 chr3 155364776 155365059 -4234724 + L1Md_F2 LINE L1 380 672 -5944 4 1770 25671 83 8 2 chr3 155365076 155368651 -4231132 + L1Md_F2 LINE L1 1989 5585 -298 4 1770 7448 80 0 5 chr3 155368652 155369649 -4230134 + L1Md_F2 LINE L1 5587 6578 -4 4 1770 559 178 24 6 chr3 155369688 155369858 -4229925 + (TG)n Simple_repeat Simple_repeat 1 173 0 4 1770 219 256 43 22 chr3 155369858 155369950 -4229833 + (TATATG)n Simple_repeat Simple_repeat 4 97 0 4 1770 237 210 0 0 chr3 155369956 155370018 -4229765 + (TG)n Simple_repeat Simple_repeat 1 62 0 4 1770 287 362 17 86 chr3 155370090 155370265 -4229518 - RSINE1 SINE B4 0 165 3 4 1770 29 0 0 0 chr3 155370668 155370697 -4229086 + AT_rich Low_complexity Low_complexity 1 29 0 4 1770 1639 87 16 12 chr3 155370736 155370980 -4228803 + L1_Mus2 LINE L1 6321 6565 -1 4 1770 768 218 0 0 chr3 155370991 155371170 -4228613 + A-rich Low_complexity Low_complexity 1 179 0 4 1770 185 0 40 0 chr3 155371324 155371349 -4228434 + (CAA)n Simple_repeat Simple_repeat 2 27 0 4 1770 355 389 45 58 chr3 155372082 155372374 -4227409 + B4A SINE B4 5 292 0 4 1770 1372 189 26 3 chr3 155372397 155372695 -4227088 - MTC LTR MaLR 0 421 1 4 1770 231 215 0 0 chr3 155372716 155372781 -4227002 + (CA)n Simple_repeat Simple_repeat 1 65 0 4 1770 2965 236 97 22 chr3 155372781 155373637 -4226146 - MTC-int LTR MaLR -426 1537 380 4 1770 7242 62 6 9 chr3 155373637 155374975 -4224808 - L1Md_F2 LINE L1 -65 6517 5184 4 1770 10402 84 2 1 chr3 155374971 155376409 -4223374 + L1Md_F2 LINE L1 3694 5132 -751 4 1770 1632 202 62 11 chr3 155376409 155376780 -4223003 - MTC-int LTR MaLR -865 393 4 4 1770 1736 240 19 42 chr3 155376781 155377212 -4222571 - MTC LTR MaLR 0 421 1 4 1770 21 36 0 0 chr3 155377766 155377794 -4221989 + AT_rich Low_complexity Low_complexity 1 28 0 4 1770 207 0 0 0 chr3 155378894 155378917 -4220866 + (CA)n Simple_repeat Simple_repeat 1 23 0 4 1770 627 108 0 0 chr3 155379375 155379468 -4220315 + (TC)n Simple_repeat Simple_repeat 1 93 0 4 1770 254 100 0 62 chr3 155379498 155379562 -4220221 + CT-rich Low_complexity Low_complexity 2 61 0 4 1770 21 57 0 0 chr3 155379630 155379665 -4220118 + AT_rich Low_complexity Low_complexity 1 35 0 4 1770 558 0 0 0 chr3 155379908 155379970 -4219813 + (TTTTG)n Simple_repeat Simple_repeat 5 66 0 4 1770 26 50 0 0 chr3 155380480 155380520 -4219263 + AT_rich Low_complexity Low_complexity 1 40 0 4 1770 288 0 0 0 chr3 155383357 155383389 -4216394 + (TTG)n Simple_repeat Simple_repeat 2 33 0 4 1770 890 244 42 49 chr3 155383405 155383689 -4216094 - Lx9 LINE L1 -351 7293 7012 4 1770 2408 290 120 10 chr3 155383701 155384593 -4215190 - Lx9 LINE L1 -519 7125 6136 5 1770 24 67 0 0 chr3 155386441 155386486 -4213297 + AT_rich Low_complexity Low_complexity 1 45 0 5 1770 298 303 62 14 chr3 155386978 155387122 -4212661 + L1M5 LINE L1 5621 5771 -353 5 1770 31 0 0 0 chr3 155387313 155387344 -4212439 + AT_rich Low_complexity Low_complexity 1 31 0 5 1770 207 0 0 0 chr3 155387783 155387806 -4211977 + (TCTG)n Simple_repeat Simple_repeat 3 25 0 5 1770 1120 239 54 51 chr3 155387831 155388166 -4211617 - RMER16 LTR ERVK 0 533 198 5 1770 215 103 0 49 chr3 155388724 155388765 -4211018 + T-rich Low_complexity Low_complexity 2 40 0 5 1770 4866 153 8 6 chr3 155389240 155390073 -4209710 - Lx2 LINE L1 -2 6995 6161 5 1770 5684 172 9 8 chr3 155390074 155391137 -4208646 + L1_Mm LINE L1 4033 5097 -786 5 1770 22 0 0 0 chr3 155392183 155392205 -4207578 + AT_rich Low_complexity Low_complexity 1 22 0 5 1770 24 32 0 0 chr3 155393299 155393330 -4206453 + AT_rich Low_complexity Low_complexity 1 31 0 5 1770 234 252 262 0 chr3 155395248 155395355 -4204428 - ORR1E LTR MaLR -224 135 1 5 1770 377 262 47 18 chr3 155395365 155395536 -4204247 + L1M LINE L1 5254 5429 -750 5 1770 2043 191 73 69 chr3 155395834 155396385 -4203398 - RLTR31A_Mm LTR ERVK 0 584 32 5 1770 405 352 6 59 chr3 155397283 155397452 -4202331 - RSINE1 SINE B4 0 165 6 5 1770 330 274 114 36 chr3 155397464 155397657 -4202126 - L1MC1 LINE L1 -452 5881 5674 5 1770 447 128 0 0 chr3 155397659 155397745 -4202038 + (TG)n Simple_repeat Simple_repeat 1 86 0 5 1770 627 51 0 0 chr3 155397748 155397827 -4201956 + (TA)n Simple_repeat Simple_repeat 1 79 0 5 1770 400 326 71 42 chr3 155397843 155398547 -4201236 - L1MC1 LINE L1 -684 5649 4924 5 1770 486 358 13 13 chr3 155399375 155399528 -4200255 + B3A SINE B2 1 153 -45 5 1770 243 61 0 0 chr3 155399541 155399574 -4200209 + (CA)n Simple_repeat Simple_repeat 2 34 0 5 1770 264 192 14 14 chr3 155399603 155399677 -4200106 + (TA)n Simple_repeat Simple_repeat 2 75 0 5 1770 252 0 0 0 chr3 155401403 155401431 -4198352 + (TTTA)n Simple_repeat Simple_repeat 3 30 0 5 1770 812 138 46 46 chr3 155401828 155401980 -4197803 - RMER4B LTR ERVK -417 168 17 5 1770 521 312 84 20 chr3 155403064 155403362 -4196421 - Lx9 LINE L1 -203 7441 7125 5 1770 21 57 0 0 chr3 155404124 155404159 -4195624 + AT_rich Low_complexity Low_complexity 1 35 0 5 1770 861 320 113 11 chr3 155404410 155404764 -4195019 - MTD LTR MaLR -29 390 1 5 1770 258 355 67 39 chr3 155404775 155404954 -4194829 - LTR52 LTR ERVL -70 351 168 5 1770 245 224 50 33 chr3 155404998 155405058 -4194725 - LTR52 LTR ERVL -356 65 5 5 1770 470 322 79 2 chr3 155405062 155405457 -4194326 - L1M5 LINE L1 -1230 4916 4482 5 1770 294 233 49 49 chr3 155405450 155405572 -4194211 - L1M5 LINE L1 -3085 3061 2940 5 1770 426 146 0 0 chr3 155406411 155406493 -4193290 + (TG)n Simple_repeat Simple_repeat 1 82 0 5 1770 452 332 59 51 chr3 155406533 155406787 -4192996 - B4A SINE B4 -6 286 31 5 1770 24 67 0 0 chr3 155408003 155408048 -4191735 + AT_rich Low_complexity Low_complexity 1 45 0 5 1770 28 0 0 0 chr3 155408098 155408126 -4191657 + AT_rich Low_complexity Low_complexity 1 28 0 5 1770 3962 65 66 9 chr3 155408585 155409115 -4190668 - LTRIS2 LTR ERV1 0 564 5 5 1770 228 299 11 22 chr3 155409262 155409351 -4190432 + CT-rich Low_complexity Low_complexity 3 90 0 5 1770 1293 165 32 28 chr3 155409401 155409553 -4190230 - RLTR22_Mur LTR ERVK -8 1840 1686 5 1770 887 109 0 7 chr3 155409553 155409692 -4190091 + (TTTC)n Simple_repeat Simple_repeat 4 141 0 5 1770 1293 165 32 28 chr3 155409692 155409789 -4189994 - RLTR22_Mur LTR ERVK -163 1685 1590 5 1770 4720 188 82 50 chr3 155409974 155411154 -4188629 - RLTR22_Mur LTR ERVK -630 1218 1 5 1770 228 322 43 75 chr3 155411728 155411822 -4187961 - RSINE1 SINE B4 -73 92 2 5 1770 523 229 0 6 chr3 155412375 155412849 -4186934 + (CA)n Simple_repeat Simple_repeat 1 470 0 5 1770 930 103 73 0 chr3 155413251 155413387 -4186396 - B1_Mus2 SINE Alu -1 146 1 5 1770 210 118 0 0 chr3 155414621 155414655 -4185128 + (T)n Simple_repeat Simple_repeat 1 34 0 5 1770 274 236 0 40 chr3 155414662 155414737 -4185046 + L1_Mur2 LINE L1 2507 2578 -3299 5 1770 409 284 86 51 chr3 155414745 155415005 -4184778 + L1MD LINE L1 3508 3776 -2367 5 1770 2092 100 30 7 chr3 155415035 155415337 -4184446 + RLTR27 LTR ERVK 1 309 0 5 1770 361 66 6 0 chr3 155415362 155415415 -4184368 + RLTR10-int LTR ERVK 222 267 -7314 5 1770 610 232 72 17 chr3 155415447 155415627 -4184156 + RLTR10-int LTR ERVK 655 844 -1143 5 1770 3318 290 48 47 chr3 155415992 155417813 -4181970 + MMERVK10C-int LTR ERVK 3653 5476 -2105 5 1770 304 331 35 18 chr3 155418300 155418469 -4181314 + MMERVK10C-int LTR ERVK 6898 7069 -512 5 1770 1394 188 0 22 chr3 155418603 155418870 -4180913 + MMERVK10C-int LTR ERVK 7321 7581 0 5 1770 2189 96 13 7 chr3 155418870 155419173 -4180610 + RLTR27 LTR ERVK 1 305 -4 5 1770 497 58 0 14 chr3 155419173 155419243 -4180540 + (TA)n Simple_repeat Simple_repeat 2 70 0 5 1770 2747 86 36 0 chr3 155419251 155419635 -4180148 - L1_Mus4 LINE L1 -9 6627 6230 5 1770 969 145 0 0 chr3 155419718 155419863 -4179920 + B1_Mus1 SINE Alu 2 146 -2 5 1770 396 0 0 0 chr3 155419863 155419907 -4179876 + (TAA)n Simple_repeat Simple_repeat 2 45 0 5 1770 297 89 0 0 chr3 155420010 155420055 -4179728 + (A)n Simple_repeat Simple_repeat 1 45 0 5 1770 22 0 0 0 chr3 155420530 155420552 -4179231 + AT_rich Low_complexity Low_complexity 1 22 0 5 1770 564 15 0 0 chr3 155422370 155422435 -4177348 + (TG)n Simple_repeat Simple_repeat 2 66 0 5 1770 597 12 37 0 chr3 155422654 155422736 -4177047 + (TCTA)n Simple_repeat Simple_repeat 4 88 0 5 1770 226 239 35 26 chr3 155422738 155422854 -4176929 + (TATATG)n Simple_repeat Simple_repeat 4 120 0 5 1770 2372 56 0 7 chr3 155422910 155423217 -4176566 + L1Md_F2 LINE L1 6266 6570 -12 5 1770 627 228 183 50 chr3 155423321 155423561 -4176222 - RLTR10A LTR ERVK 0 411 140 5 1770 647 338 89 55 chr3 155423746 155424084 -4175699 + MTE-int LTR MaLR 2 348 -1232 5 1770 801 98 131 0 chr3 155424084 155424206 -4175577 + B1_Mus1 SINE Alu 1 138 -10 5 1770 495 0 0 0 chr3 155424206 155424261 -4175522 + (CAAAA)n Simple_repeat Simple_repeat 2 56 0 5 1770 647 338 89 55 chr3 155424261 155424394 -4175389 + MTE-int LTR MaLR 349 489 -1091 5 1770 841 202 12 0 chr3 155425073 155425241 -4174542 + Lx4A LINE L1 5825 5994 -1064 5 1770 272 335 87 77 chr3 155425550 155426203 -4173580 - L1MC3 LINE L1 -388 7397 6738 5 1770 577 288 79 90 chr3 155426928 155427195 -4172588 + MTD LTR MaLR 154 417 -2 5 1770 304 22 0 43 chr3 155427653 155427700 -4172083 + (TTTTG)n Simple_repeat Simple_repeat 2 46 0 5 1770 279 177 0 0 chr3 155427797 155427859 -4171924 + (TG)n Simple_repeat Simple_repeat 2 63 0 5 1770 38760 35 3 0 chr3 155428744 155434137 -4165646 - L1Md_T LINE L1 0 6582 1170 5 1770 5527 178 29 29 chr3 155434143 155435466 -4164317 - L1Md_T LINE L1 -5411 1205 99 5 1770 24 0 0 0 chr3 155437287 155437311 -4162472 + AT_rich Low_complexity Low_complexity 1 24 0 5 1770 21 71 0 0 chr3 155438927 155438969 -4160814 + AT_rich Low_complexity Low_complexity 1 42 0 5 1770 191 369 35 12 chr3 155439722 155439807 -4159976 + L2b LINE L2 3286 3372 -3 5 1770 25 0 0 0 chr3 155440306 155440331 -4159452 + AT_rich Low_complexity Low_complexity 1 25 0 5 1770 703 299 60 15 chr3 155440755 155440955 -4158828 + B3 SINE B2 7 215 -1 5 1770 251 236 0 14 chr3 155441065 155441138 -4158645 + (CATATA)n Simple_repeat Simple_repeat 3 74 0 5 1770 470 276 0 28 chr3 155441144 155441252 -4158531 - PB1D9 SINE Alu -9 111 7 5 1770 4363 85 31 2 chr3 155441288 155441902 -4157881 - L1_Mus3 LINE L1 -419 6219 5588 5 1770 2111 121 58 87 chr3 155441915 155442331 -4157452 + L1_Mus3 LINE L1 6223 6626 -12 5 1770 30 0 0 24 chr3 155442386 155442407 -4157376 + AT_rich Low_complexity Low_complexity 1 21 0 5 1770 2355 93 3 21 chr3 155442407 155442747 -4157036 - L1_Mus1 LINE L1 0 6567 6234 5 1770 30 0 0 24 chr3 155442747 155442766 -4157017 + AT_rich Low_complexity Low_complexity 1 19 0 5 1770 432 106 19 37 chr3 155442776 155442884 -4156899 + (CAGAGA)n Simple_repeat Simple_repeat 3 108 0 5 1770 978 307 39 39 chr3 155443525 155443881 -4155902 + MTEb LTR MaLR 9 364 -15 5 1770 204 182 0 0 chr3 155444177 155444221 -4155562 + (TG)n Simple_repeat Simple_repeat 2 45 0 5 1770 246 333 96 45 chr3 155444224 155444381 -4155402 - B4 SINE B4 0 292 128 5 1770 298 273 0 0 chr3 155444396 155444462 -4155321 - B4A SINE B4 -220 72 7 5 1770 250 306 154 18 chr3 155445917 155446027 -4153756 + MLT1A LTR MaLR 192 316 -58 5 1770 315 0 0 0 chr3 155446263 155446298 -4153485 + (TA)n Simple_repeat Simple_repeat 1 35 0 5 1770 26282 119 8 15 chr3 155446299 155449736 -4150047 - L1_Mus2 LINE L1 -6 6560 3138 5 1770 201 74 0 0 chr3 155449736 155449763 -4150020 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 5 1770 26282 131 10 9 chr3 155449763 155451324 -4148459 - L1_Mus2 LINE L1 -2746 3137 1578 5 221 719 96 19 0 chr3 155451329 155451433 -4148350 - U6 snRNA snRNA -1 106 1 5 1771 383 313 32 52 chr3 155452178 155452333 -4147450 - RSINE1 SINE B4 -8 157 6 5 1771 438 69 0 0 chr3 155453150 155453208 -4146575 + (TC)n Simple_repeat Simple_repeat 2 59 0 5 1771 4334 166 35 36 chr3 155453308 155454147 -4145636 - Lx4A LINE L1 0 7058 6221 5 1771 2015 125 24 0 chr3 155454148 155454445 -4145338 + L1_Mur2 LINE L1 5304 5607 -270 5 1771 21 0 0 0 chr3 155455164 155455185 -4144598 + AT_rich Low_complexity Low_complexity 1 21 0 5 1771 2873 163 50 13 chr3 155455565 155456105 -4143678 - Lx2B LINE L1 -3 6997 6438 5 1771 311 331 46 26 chr3 155458095 155458247 -4141536 - RMER12 LTR ERVK -62 1260 1106 5 1771 3018 37 2 3 chr3 155458247 155458653 -4141130 - L1Md_F3 LINE L1 -632 5952 5547 5 1771 4793 51 17 0 chr3 155458653 155459256 -4140527 + L1Md_F3 LINE L1 5958 6570 -14 5 1771 12711 201 68 28 chr3 155459856 155460957 -4138826 + L1_Mur2 LINE L1 892 2057 -3823 5 1771 189 0 0 0 chr3 155460957 155460978 -4138805 + (CA)n Simple_repeat Simple_repeat 2 22 0 5 1771 405 0 0 0 chr3 155460978 155461022 -4138761 + (GA)n Simple_repeat Simple_repeat 2 46 0 5 1771 12711 190 51 29 chr3 155461022 155463377 -4136406 + L1_Mur2 LINE L1 2058 4446 -1434 5 1771 1240 177 17 0 chr3 155463379 155463611 -4136172 + L1_Mur2 LINE L1 4952 5187 -690 5 1771 1085 140 103 5 chr3 155463608 155463831 -4135952 - Lx2B LINE L1 -881 6119 5875 5 1771 541 362 52 0 chr3 155463836 155464104 -4135679 + Lx6 LINE L1 6082 6363 -687 5 1771 1265 303 67 24 chr3 155464106 155464653 -4135130 + Lx6 LINE L1 6484 7456 -4 5 1771 21 0 0 0 chr3 155464787 155464808 -4134975 + AT_rich Low_complexity Low_complexity 1 21 0 5 1771 295 311 0 0 chr3 155464808 155464898 -4134885 + (TATG)n Simple_repeat Simple_repeat 4 93 0 5 1771 534 241 75 70 chr3 155465459 155465673 -4134110 - Lx9 LINE L1 -500 7144 6930 6 1771 771 310 27 33 chr3 155465708 155466038 -4133745 + Lx9 LINE L1 7143 7470 -174 6 1771 273 314 29 0 chr3 155466541 155466611 -4133172 - Charlie12 DNA MER1_type -2801 72 1 6 1771 1010 314 82 18 chr3 155466996 155467434 -4132349 + RMER5 LTR ERV1 67 532 -2 6 1771 548 14 0 14 chr3 155468887 155468957 -4130826 + (TTTTG)n Simple_repeat Simple_repeat 2 70 0 6 1771 309 376 43 63 chr3 155469029 155469187 -4130596 + B3 SINE B2 3 162 -54 6 1771 471 35 0 0 chr3 155469187 155469244 -4130539 + (CA)n Simple_repeat Simple_repeat 2 58 0 6 1771 309 376 43 63 chr3 155469244 155469292 -4130491 + B3 SINE B2 163 205 -11 6 1771 201 232 0 0 chr3 155469308 155469364 -4130419 + (CA)n Simple_repeat Simple_repeat 1 56 0 6 1771 8474 21 0 0 chr3 155470068 155471729 -4128054 - L1Md_T LINE L1 -1 6581 4921 6 1771 617 136 27 0 chr3 155471854 155471964 -4127819 + L1_Mus2 LINE L1 6453 6565 -1 6 1771 800 208 0 0 chr3 155472546 155472690 -4127093 + B1_Mus1 SINE Alu 5 148 0 6 1771 188 380 49 25 chr3 155472829 155472991 -4126792 - L2 LINE L2 -1107 2312 2147 6 1771 249 255 0 18 chr3 155473147 155473203 -4126580 + polypurine Low_complexity Low_complexity 4 58 0 6 1771 418 207 11 33 chr3 155473218 155473398 -4126385 + GA-rich Low_complexity Low_complexity 4 179 0 6 1771 944 177 358 9 chr3 155473468 155473686 -4126097 - RMER6C LTR ERVK -396 294 1 6 1771 7079 160 38 64 chr3 155476931 155478638 -4121145 + Lx4A LINE L1 5397 7057 -1 6 1771 21 0 0 0 chr3 155478640 155478661 -4121122 + AT_rich Low_complexity Low_complexity 1 21 0 6 1771 238 71 0 0 chr3 155478747 155478789 -4120994 - Lx LINE L1 0 6654 6613 6 1771 755 75 9 0 chr3 155479983 155480090 -4119693 + (GAGAA)n Simple_repeat Simple_repeat 4 111 0 6 1771 22 35 0 0 chr3 155480896 155480925 -4118858 + AT_rich Low_complexity Low_complexity 1 29 0 6 1771 332 324 32 43 chr3 155481517 155481542 -4118241 - B2_Mm2 SINE B2 -10 185 164 6 1771 495 0 0 0 chr3 155481542 155481597 -4118186 + (TG)n Simple_repeat Simple_repeat 2 56 0 6 1771 377 324 32 43 chr3 155481597 155481758 -4118025 - B3 SINE B2 -32 163 1 6 1771 426 317 19 142 chr3 155481868 155482192 -4117591 - Lx8 LINE L1 -42 7431 7148 6 1771 306 179 17 26 chr3 155483908 155484023 -4115760 + CT-rich Low_complexity Low_complexity 1 114 0 6 1771 22 103 0 0 chr3 155485040 155485118 -4114665 + AT_rich Low_complexity Low_complexity 1 78 0 6 1771 21 0 0 0 chr3 155485226 155485247 -4114536 + AT_rich Low_complexity Low_complexity 1 21 0 6 1771 4981 91 7 4 chr3 155486762 155487469 -4112314 + L1_Mus3 LINE L1 5930 6638 0 6 1771 407 246 0 8 chr3 155487799 155488059 -4111724 + (TG)n Simple_repeat Simple_repeat 1 257 0 6 1771 354 196 0 0 chr3 155488076 155488183 -4111600 + (TG)n Simple_repeat Simple_repeat 1 107 0 6 1771 296 258 0 7 chr3 155488216 155488368 -4111415 + (TG)n Simple_repeat Simple_repeat 1 151 0 6 1771 391 297 0 0 chr3 155488379 155488507 -4111276 + (TG)n Simple_repeat Simple_repeat 2 129 0 6 1771 693 63 0 0 chr3 155488983 155489078 -4110705 + (TG)n Simple_repeat Simple_repeat 2 96 0 6 1771 416 300 125 13 chr3 155489123 155489275 -4110508 - B4A SINE B4 -120 172 4 6 1771 201 60 58 39 chr3 155489422 155489474 -4110309 + (TTTG)n Simple_repeat Simple_repeat 1 53 0 6 1771 1182 41 0 14 chr3 155489474 155489622 -4110161 - B1_Mm SINE Alu -1 146 1 6 1771 291 352 48 48 chr3 155489756 155489923 -4109860 + B4A SINE B4 126 292 0 6 1771 5063 64 1 19 chr3 155490143 155490831 -4108952 + L1Md_F2 LINE L1 5896 6571 -11 6 1771 395 268 21 28 chr3 155491012 155491154 -4108629 - HAL1-2a_MD LINE L1 -519 2505 2365 6 1771 26 30 0 0 chr3 155491732 155491765 -4108018 + AT_rich Low_complexity Low_complexity 1 33 0 6 1771 207 220 17 0 chr3 155492782 155492841 -4106942 + (TAAA)n Simple_repeat Simple_repeat 1 60 0 6 1771 282 116 0 0 chr3 155493617 155493660 -4106123 + (TG)n Simple_repeat Simple_repeat 2 44 0 6 1771 297 311 0 0 chr3 155493675 155493749 -4106034 - RSINE1 SINE B4 -41 124 51 6 1771 6607 134 69 1 chr3 155493956 155495413 -4104370 + Lx LINE L1 5070 6654 0 6 1771 3412 165 26 37 chr3 155495590 155496239 -4103544 + RLTR26 LTR ERVK 1 642 0 6 1771 296 244 11 22 chr3 155496239 155496331 -4103452 + RLTR22_Mus LTR ERVK 500 590 -1218 6 1771 1422 83 0 0 chr3 155496390 155496582 -4103201 - L1Md_F2 LINE L1 -489 6093 5902 6 1771 2175 48 39 58 chr3 155496582 155496891 -4102892 + L1Md_F2 LINE L1 6276 6578 -4 6 1771 323 321 45 35 chr3 155496918 155497126 -4102657 + RLTR22_Mur LTR ERVK 591 773 -1075 6 1771 718 186 98 61 chr3 155497302 155497526 -4102257 + RMER12 LTR ERVK 989 1199 -123 6 1771 393 39 0 0 chr3 155498130 155498181 -4101602 + (TAAA)n Simple_repeat Simple_repeat 4 54 0 6 1771 209 33 0 32 chr3 155498405 155498436 -4101347 + (CTTA)n Simple_repeat Simple_repeat 3 32 0 6 1771 1405 314 63 14 chr3 155498452 155499010 -4100773 - Lx5 LINE L1 -18 7032 6457 6 1771 261 146 0 0 chr3 155499098 155499146 -4100637 + (CA)n Simple_repeat Simple_repeat 2 49 0 6 1771 1325 225 33 9 chr3 155499167 155499504 -4100279 + L1_Mur2 LINE L1 2062 2406 -3471 6 1771 528 121 0 0 chr3 155500395 155500486 -4099297 + (TG)n Simple_repeat Simple_repeat 1 91 0 1 1771 1833 253 38 13 chr3 155500486 155500934 -4098849 - MT2A LTR ERVL -74 459 1 2 1771 1602 153 77 87 chr3 155501123 155501537 -4098246 - RMER17C LTR ERVK 0 410 1 3 1771 316 260 92 38 chr3 155501689 155501873 -4097910 + L1M4 LINE L1 4303 4496 -1650 4 1771 286 349 126 17 chr3 155502158 155502333 -4097450 - MLT1-int LTR MaLR -1151 220 27 5 1771 200 128 26 0 chr3 155502369 155502408 -4097375 + A-rich Low_complexity Low_complexity 3 42 0 6 1771 1363 226 70 15 chr3 155503141 155503456 -4096327 - ORR1B2 LTR MaLR -7 360 26 7 1771 1953 164 81 51 chr3 155503456 155503849 -4095934 - RLTR44A LTR ERVK 0 405 1 8 1771 1363 226 70 15 chr3 155503849 155503874 -4095909 - ORR1B2 LTR MaLR -342 25 1 7 1771 15414 13 0 2 chr3 155504572 155507039 -4092744 - L1Md_A LINE L1 0 6582 4120 9 1771 329 282 12 0 chr3 155509060 155509145 -4090638 - B3A SINE B2 -100 98 13 1 1771 304 359 81 66 chr3 155509208 155509602 -4090181 - L1MEg LINE L1 -4598 1486 1087 1 1771 292 246 0 0 chr3 155509812 155509877 -4089906 - Lx6 LINE L1 -635 6825 6761 1 1771 435 287 43 0 chr3 155509879 155509994 -4089789 - Lx5 LINE L1 -689 6361 6242 1 1771 1454 302 27 48 chr3 155509985 155510506 -4089277 + Lx5 LINE L1 6509 7018 -32 1 1771 22 56 0 0 chr3 155510513 155510549 -4089234 + AT_rich Low_complexity Low_complexity 1 36 0 1 1771 315 0 0 0 chr3 155510782 155510817 -4088966 + (TCTCTG)n Simple_repeat Simple_repeat 1 35 0 1 1771 551 278 90 54 chr3 155510848 155511204 -4088579 + L1_Rod LINE L1 4841 5230 -916 1 1771 7318 72 26 0 chr3 155511460 155512570 -4087213 + L1_Mus2 LINE L1 5429 6566 0 1 1771 229 274 0 0 chr3 155512577 155512650 -4087133 + A-rich Low_complexity Low_complexity 1 73 0 1 1771 334 366 119 11 chr3 155512712 155512972 -4086811 - L1M5 LINE L1 -627 5613 5326 1 1771 1046 106 0 0 chr3 155513236 155513378 -4086405 + B1_Mus2 SINE Alu 6 147 0 2 1771 1975 319 94 37 chr3 155513496 155514499 -4085284 - Lx8 LINE L1 -132 7341 6292 2 1771 987 108 0 0 chr3 155514499 155514638 -4085145 - B1_Mus2 SINE Alu -8 139 1 2 1771 1975 319 94 37 chr3 155514638 155514842 -4084941 - Lx8 LINE L1 -1182 6291 6065 2 1771 226 333 86 16 chr3 155515067 155515195 -4084588 + L1_Rod LINE L1 589 725 -6883 2 1771 2563 231 55 11 chr3 155515216 155515948 -4083835 + L1_Rod LINE L1 659 1421 -4426 2 1771 405 0 0 0 chr3 155515958 155516003 -4083780 + (CA)n Simple_repeat Simple_repeat 2 46 0 2 1771 3355 217 61 17 chr3 155516004 155516941 -4082842 + L1_Rod LINE L1 1614 2591 -3256 2 1771 234 250 40 0 chr3 155516981 155517057 -4082726 + (CATATA)n Simple_repeat Simple_repeat 2 80 0 2 1771 225 0 0 0 chr3 155517537 155517562 -4082221 + (ATTG)n Simple_repeat Simple_repeat 2 26 0 2 1771 1819 169 0 7 chr3 155517828 155518138 -4081645 - RLTR10E LTR ERVK -3 308 1 2 1771 461 310 159 44 chr3 155518555 155519057 -4080726 - L1MCa LINE L1 -5158 1350 791 2 1771 1137 82 0 0 chr3 155519198 155519345 -4080438 - B1_Mus2 SINE Alu 0 147 1 2 1771 382 286 93 64 chr3 155519784 155519956 -4079827 - MTEb LTR MaLR -196 183 7 3 1771 327 49 0 0 chr3 155520660 155520701 -4079082 + (TTTTA)n Simple_repeat Simple_repeat 5 45 0 3 1771 289 133 0 0 chr3 155521216 155521261 -4078522 - RMER6C LTR ERVK 0 690 646 3 1771 1569 268 50 0 chr3 155521262 155521683 -4078100 + Lx6 LINE L1 7009 7450 -10 3 1771 450 0 0 0 chr3 155521684 155521734 -4078049 + (TAA)n Simple_repeat Simple_repeat 3 52 0 3 1771 222 37 0 0 chr3 155522322 155522349 -4077434 + (TC)n Simple_repeat Simple_repeat 2 28 0 3 1771 403 358 61 53 chr3 155522533 155522908 -4076875 + MT2A LTR ERVL 12 389 -144 3 1771 362 159 0 55 chr3 155523202 155523275 -4076508 - B1_Mur2 SINE Alu 0 149 81 3 1771 419 266 9 44 chr3 155523257 155523371 -4076412 - B1F SINE Alu -22 127 18 3 1771 588 232 45 78 chr3 155524432 155524586 -4075197 - B1_Mur2 SINE Alu 0 149 1 3 1771 339 25 0 0 chr3 155525827 155525867 -4073916 + (CA)n Simple_repeat Simple_repeat 1 40 0 4 1771 456 19 0 0 chr3 155525931 155525984 -4073799 + (CA)n Simple_repeat Simple_repeat 2 54 0 4 1771 420 20 0 0 chr3 155525984 155526032 -4073751 + (TA)n Simple_repeat Simple_repeat 1 49 0 4 1771 802 168 11 11 chr3 155526742 155526917 -4072866 + (CATA)n Simple_repeat Simple_repeat 4 178 0 4 1771 412 258 0 22 chr3 155526918 155527053 -4072730 + (CA)n Simple_repeat Simple_repeat 2 133 0 4 1771 226 268 56 14 chr3 155527092 155527164 -4072619 + B3 SINE B2 118 192 -24 4 1771 2150 131 30 0 chr3 155528040 155528406 -4071377 - Lx2 LINE L1 -3 6994 6618 4 1771 246 217 0 0 chr3 155528490 155528559 -4071224 + (CA)n Simple_repeat Simple_repeat 2 70 0 4 1771 247 65 0 42 chr3 155529964 155530012 -4069771 + (TTTTTG)n Simple_repeat Simple_repeat 3 48 0 4 1771 207 244 0 0 chr3 155530042 155530083 -4069700 + G-rich Low_complexity Low_complexity 5 45 0 4 1771 1302 261 66 65 chr3 155530083 155530624 -4069159 + RLTR31_Mur LTR ERVK 66 553 0 5 1771 856 0 19 0 chr3 155530695 155530799 -4068984 + (TG)n Simple_repeat Simple_repeat 2 107 0 5 1771 512 305 23 15 chr3 155530802 155530932 -4068851 - B1F SINE Alu -7 142 12 5 1771 252 0 0 0 chr3 155531007 155531035 -4068748 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 5 1771 718 255 0 0 chr3 155531035 155531180 -4068603 - B1_Mus1 SINE Alu -3 145 1 5 1771 1172 61 0 0 chr3 155531694 155531841 -4067942 + B1_Mm SINE Alu 1 147 0 5 1771 252 41 39 39 chr3 155531845 155531896 -4067887 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 5 1771 5096 28 16 2 chr3 155533428 155534039 -4065744 + L1Md_F3 LINE L1 5965 6584 0 5 1771 2570 305 101 11 chr3 155534041 155534259 -4065524 - Lx8 LINE L1 -12 7461 7215 5 1771 630 0 0 0 chr3 155534259 155534329 -4065454 + (TC)n Simple_repeat Simple_repeat 1 70 0 5 1771 2570 305 101 11 chr3 155534329 155535231 -4064552 - Lx8 LINE L1 -259 7214 6241 5 1771 23 68 0 0 chr3 155537109 155537153 -4062630 + AT_rich Low_complexity Low_complexity 1 44 0 6 1771 1727 134 45 60 chr3 155537750 155538084 -4061699 + ORR1A4 LTR MaLR 1 329 0 6 1771 525 196 0 67 chr3 155538710 155538830 -4060953 - ORR1C1 LTR MaLR -266 112 1 6 1771 1032 248 122 18 chr3 155538840 155539092 -4060691 + ORR1C2 LTR MaLR 21 306 -78 6 1771 180 0 0 0 chr3 155539092 155539112 -4060671 + (TAAA)n Simple_repeat Simple_repeat 3 22 0 6 1771 1032 248 122 18 chr3 155539112 155539187 -4060596 + ORR1C2 LTR MaLR 307 381 -3 6 1771 1031 118 12 0 chr3 155540719 155540889 -4058894 + (TTTC)n Simple_repeat Simple_repeat 2 173 0 6 1771 472 255 148 128 chr3 155540903 155541240 -4058543 + MTE2a LTR MaLR 31 374 -5 6 1771 23 0 0 0 chr3 155541252 155541275 -4058508 + AT_rich Low_complexity Low_complexity 1 23 0 6 1771 282 29 0 0 chr3 155541349 155541384 -4058399 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 6 1771 202 187 0 39 chr3 155541934 155542012 -4057771 + T-rich Low_complexity Low_complexity 3 77 0 6 1771 945 311 32 6 chr3 155542206 155542545 -4057238 - Lx8 LINE L1 -135 7338 6991 7 1771 207 0 0 0 chr3 155543784 155543807 -4055976 + (TG)n Simple_repeat Simple_repeat 2 24 0 7 1771 676 246 7 0 chr3 155544359 155544497 -4055286 + B1_Mus2 SINE Alu 9 147 0 7 1771 225 314 18 73 chr3 155544529 155544639 -4055144 + MLT1E3 LTR MaLR 216 319 -305 7 1771 22 56 0 0 chr3 155545150 155545186 -4054597 + AT_rich Low_complexity Low_complexity 1 36 0 7 1771 654 118 0 0 chr3 155545332 155545434 -4054349 + (TCC)n Simple_repeat Simple_repeat 2 103 0 7 1771 287 283 55 109 chr3 155545544 155545641 -4054142 - Lx7 LINE L1 -31 5816 5720 7 1771 528 245 101 30 chr3 155545641 155545839 -4053944 + B3 SINE B2 1 212 -4 7 1771 392 264 83 53 chr3 155545839 155546098 -4053685 - Lx7 LINE L1 -514 5786 5545 7 1771 23 33 0 0 chr3 155546417 155546447 -4053336 + AT_rich Low_complexity Low_complexity 1 30 0 7 1771 417 20 0 0 chr3 155546832 155546882 -4052901 + (CA)n Simple_repeat Simple_repeat 2 51 0 7 1771 22 0 0 0 chr3 155547068 155547090 -4052693 + AT_rich Low_complexity Low_complexity 1 22 0 8 1771 969 230 51 31 chr3 155548767 155549023 -4050760 + Lx6 LINE L1 7200 7460 0 8 1771 25 51 0 0 chr3 155549069 155549108 -4050675 + AT_rich Low_complexity Low_complexity 1 39 0 8 1771 28 79 0 0 chr3 155551457 155551520 -4048263 + AT_rich Low_complexity Low_complexity 1 63 0 8 1771 240 100 0 0 chr3 155551520 155551560 -4048223 + (TAG)n Simple_repeat Simple_repeat 2 41 0 8 1771 1304 220 77 22 chr3 155551894 155552205 -4047578 + ORR1B2 LTR MaLR 32 359 -8 8 1771 453 64 25 13 chr3 155552731 155552810 -4046973 + (TAGA)n Simple_repeat Simple_repeat 4 83 0 8 1771 5917 74 0 0 chr3 155553499 155554260 -4045523 - L1_Mus1 LINE L1 -2 6565 5805 8 1771 557 301 113 78 chr3 155554657 155555107 -4044676 - RLTR11A2 LTR ERVK -27 500 35 8 1771 5158 201 30 8 chr3 155555193 155556314 -4043469 - MYSERV6-int LTR ERVK -46 8913 7768 8 1771 440 286 108 19 chr3 155556334 155556491 -4043292 - RMER4A LTR ERVK -45 421 251 9 1771 2612 296 58 60 chr3 155556491 155557798 -4041985 - MYSERV-int LTR ERVK -1424 5126 3823 9 1771 351 0 0 0 chr3 155557801 155557840 -4041943 + (TA)n Simple_repeat Simple_repeat 2 40 0 9 1771 3305 105 0 4 chr3 155558471 155558939 -4040844 + L1_Mus4 LINE L1 5924 6389 -247 9 1771 405 269 43 34 chr3 155558939 155559108 -4040675 - RLTR43A LTR ERVK 0 364 214 9 1771 1498 123 8 4 chr3 155559277 155559558 -4040225 + L1_Mus4 LINE L1 6382 6636 0 9 1771 2160 127 32 0 chr3 155560726 155561064 -4038719 + Lx2 LINE L1 6649 6997 0 9 1771 195 261 171 0 chr3 155561162 155561250 -4038533 - L3 LINE CR1 -3515 974 872 9 1771 445 258 122 31 chr3 155561669 155562027 -4037756 + MTE2a LTR MaLR 1 365 -14 9 1771 259 250 15 0 chr3 155562849 155562917 -4036866 + T-rich Low_complexity Low_complexity 5 73 0 9 1771 248 0 31 0 chr3 155564240 155564272 -4035511 + (CAAA)n Simple_repeat Simple_repeat 1 33 0 1 1771 918 299 52 34 chr3 155565432 155565757 -4034026 - ORR1E LTR MaLR 0 359 29 1 1771 351 0 0 0 chr3 155565783 155565822 -4033961 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 1771 32676 75 6 18 chr3 155565878 155570974 -4028809 + L1Md_F2 LINE L1 555 5585 -298 1 1771 8195 44 1 0 chr3 155570976 155572032 -4027751 + L1Md_F2 LINE L1 5588 6582 0 1 1771 216 0 0 0 chr3 155572480 155572504 -4027279 + (CAA)n Simple_repeat Simple_repeat 2 25 0 1 1771 328 235 66 141 chr3 155573048 155573261 -4026522 - RLTR19-int LTR ERVK -2184 3953 3757 1 1771 7354 111 2 1 chr3 155573585 155574696 -4025087 - L1_Mus4 LINE L1 0 6636 5521 1 1771 615 120 0 0 chr3 155574697 155574789 -4024994 + L1_Mur1 LINE L1 5443 5534 -352 1 1771 201 94 0 0 chr3 155575095 155575127 -4024656 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 1 1771 1517 271 79 96 chr3 155575910 155576665 -4023118 - RLTR42-int LTR ERVK -3215 2307 1570 1 1771 186 43 0 0 chr3 155576665 155576688 -4023095 + (TG)n Simple_repeat Simple_repeat 1 23 0 1 1771 1517 271 79 96 chr3 155576688 155577155 -4022628 - RLTR42-int LTR ERVK -3953 1569 1105 1 1771 2220 208 98 9 chr3 155578455 155578983 -4020800 - RMER15 LTR ERVL 0 575 1 1 1771 213 244 12 12 chr3 155579891 155579974 -4019809 + (TA)n Simple_repeat Simple_repeat 2 84 0 1 1771 465 76 0 0 chr3 155579978 155580044 -4019739 + (TG)n Simple_repeat Simple_repeat 2 67 0 1 1771 687 273 13 7 chr3 155580054 155580209 -4019574 - B3A SINE B2 -42 156 1 1 1771 1984 173 24 11 chr3 155580319 155580688 -4019095 - Lx LINE L1 0 6654 6281 1 1771 233 185 37 0 chr3 155580837 155580891 -4018892 + (TATG)n Simple_repeat Simple_repeat 4 59 0 1 1771 225 117 50 0 chr3 155580893 155580953 -4018830 + (TCTA)n Simple_repeat Simple_repeat 4 66 0 1 1771 536 321 50 25 chr3 155581222 155581420 -4018363 + B4 SINE B4 3 205 -87 1 1771 317 314 158 46 chr3 155581869 155582109 -4017674 - MLT1I LTR MaLR -66 345 79 1 1771 246 303 13 0 chr3 155582337 155582413 -4017370 - MIRc SINE MIR -17 251 175 1 1772 859 120 38 0 chr3 155582904 155583062 -4016721 + GA-rich Low_complexity Low_complexity 4 167 0 1 1772 271 321 0 12 chr3 155583131 155583216 -4016567 + CT-rich Low_complexity Low_complexity 2 85 0 1 1772 528 184 69 6 chr3 155583322 155583481 -4016302 - Lx9 LINE L1 0 7644 7476 1 1772 3108 192 43 20 chr3 155583891 155584628 -4015155 - Lx9 LINE L1 -121 7523 6770 1 1772 308 281 39 10 chr3 155585026 155585130 -4014653 - MER53 DNA hAT -1 192 86 1 1772 181 224 19 58 chr3 155586308 155586360 -4013423 + L3 LINE CR1 940 989 -3500 1 1772 23 0 0 0 chr3 155587209 155587232 -4012551 + AT_rich Low_complexity Low_complexity 1 23 0 1 1772 27908 118 48 5 chr3 155587237 155589425 -4010358 - L1_Mus3 LINE L1 -39 6599 4333 1 1772 3683 94 24 0 chr3 155589425 155589935 -4009848 - L1_Mus1 LINE L1 -2 6565 6044 1 1772 27908 137 10 6 chr3 155589935 155589995 -4009788 - L1_Mus3 LINE L1 -1551 4332 4262 1 1772 2469 109 8 5 chr3 155589995 155590365 -4009418 - L1_Mus2 LINE L1 -1 6565 6195 1 1772 27908 137 10 6 chr3 155590365 155590417 -4009366 - L1_Mus3 LINE L1 -1622 4261 4199 1 1772 357 93 0 0 chr3 155590417 155590471 -4009312 + (TA)n Simple_repeat Simple_repeat 1 54 0 1 1772 27908 139 18 10 chr3 155590471 155594210 -4005573 - L1_Mus3 LINE L1 -1685 4198 436 1 1772 256 355 0 8 chr3 155595250 155595309 -4004474 + (TATATG)n Simple_repeat Simple_repeat 1 59 0 1 1772 1375 114 279 30 chr3 155595309 155595571 -4004212 - ORR1A2 LTR MaLR 0 327 1 1 1772 256 355 0 8 chr3 155595571 155595633 -4004150 + (TATATG)n Simple_repeat Simple_repeat 6 66 0 1 1772 303 295 78 33 chr3 155596329 155596574 -4003209 - L1M3 LINE L1 -3268 2872 2617 1 1772 724 280 139 42 chr3 155596663 155596950 -4002833 + RLTR20B3 LTR ERVK 25 339 -238 1 1772 219 372 71 40 chr3 155597350 155597476 -4002307 + RSINE1 SINE B4 5 134 -31 1 1772 434 251 4 4 chr3 155597539 155597790 -4001993 + (TG)n Simple_repeat Simple_repeat 1 251 0 1 1772 458 219 5 33 chr3 155597792 155597976 -4001807 + (TATG)n Simple_repeat Simple_repeat 2 180 0 1 1772 372 22 0 0 chr3 155600004 155600049 -3999734 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 1772 297 337 128 21 chr3 155600567 155600849 -3998934 - RMER20B LTR ERVK -242 385 74 1 1772 1050 272 72 28 chr3 155600875 155600924 -3998859 - ORR1E LTR MaLR -13 346 299 1 1772 4313 49 0 0 chr3 155600924 155601452 -3998331 + L1Md_F3 LINE L1 6056 6583 -1 1 1772 1050 272 72 28 chr3 155601452 155601723 -3998060 - ORR1E LTR MaLR -61 298 12 1 1772 218 81 27 0 chr3 155601808 155601845 -3997938 + (CAA)n Simple_repeat Simple_repeat 2 39 0 1 1772 183 279 29 29 chr3 155602104 155602174 -3997609 + MIRc SINE MIR 84 153 -115 1 1772 289 159 52 22 chr3 155602475 155602610 -3997173 + (TAGA)n Simple_repeat Simple_repeat 4 142 0 1 1772 212 217 33 0 chr3 155602652 155602712 -3997071 + (TAGA)n Simple_repeat Simple_repeat 4 65 0 1 1772 314 192 42 9 chr3 155602751 155602974 -3996809 + (TAGA)n Simple_repeat Simple_repeat 1 230 0 1 1772 210 256 22 29 chr3 155602880 155603017 -3996766 + (TA)n Simple_repeat Simple_repeat 2 137 0 1 1772 238 152 34 0 chr3 155603019 155603078 -3996705 + (TAGA)n Simple_repeat Simple_repeat 4 64 0 1 1772 3264 155 11 14 chr3 155603215 155603770 -3996013 + RLTR1D LTR ERV1 37 589 -16 1 1772 315 0 0 0 chr3 155605100 155605135 -3994648 + (TTA)n Simple_repeat Simple_repeat 2 36 0 1 1772 565 236 18 14 chr3 155605137 155605277 -3994506 - B1_Mus1 SINE Alu -4 144 3 1 1772 271 250 71 87 chr3 155605163 155605290 -3994493 - MT2B LTR ERVL -325 276 152 1 1772 21 0 0 0 chr3 155605884 155605905 -3993878 + AT_rich Low_complexity Low_complexity 1 21 0 1 1772 1077 96 7 0 chr3 155606803 155606949 -3992834 - B1_Mus2 SINE Alu 0 147 1 1 1772 293 253 24 0 chr3 155608578 155608612 -3991171 + polypurine Low_complexity Low_complexity 4 38 0 1 1772 1461 163 84 62 chr3 155608612 155608933 -3990850 - ORR1A4 LTR MaLR -1 328 1 1 1772 293 253 24 0 chr3 155608933 155608981 -3990802 + polypurine Low_complexity Low_complexity 39 87 0 1 1772 1981 144 3 18 chr3 155610804 155611136 -3988647 - ORR1A2 LTR MaLR 0 327 1 1 1772 351 303 0 53 chr3 155611993 155612181 -3987602 + (TATG)n Simple_repeat Simple_repeat 3 180 0 1 1772 441 251 5 185 chr3 155612420 155612615 -3987168 + ORR1E LTR MaLR 1 160 -199 1 1772 2279 93 3 0 chr3 155612615 155612936 -3986847 - L1_Mm LINE L1 -931 4952 4631 1 1772 318 80 0 0 chr3 155612936 155612986 -3986797 + (T)n Simple_repeat Simple_repeat 1 50 0 1 1772 6708 82 4 0 chr3 155613008 155614133 -3985650 + L1_Mus2 LINE L1 4958 6086 -480 1 1772 2111 151 80 3 chr3 155614128 155614480 -3985303 - Lx4A LINE L1 -166 6892 6514 1 1772 470 330 51 55 chr3 155614483 155614756 -3985027 + MT2A LTR ERVL 191 462 -71 1 1772 261 0 0 0 chr3 155614923 155614952 -3984831 + (TG)n Simple_repeat Simple_repeat 2 30 0 1 1772 210 310 12 12 chr3 155614957 155615042 -3984741 + (TATG)n Simple_repeat Simple_repeat 2 86 0 1 1772 409 359 82 35 chr3 155615052 155615283 -3984500 - B4A SINE B4 -14 278 37 1 1772 320 303 13 0 chr3 155615737 155615813 -3983970 + ID4 SINE ID 1 77 -6 1 1772 217 146 36 18 chr3 155615898 155615954 -3983829 + (TCTA)n Simple_repeat Simple_repeat 4 60 0 1 1772 24 0 0 0 chr3 155616109 155616133 -3983650 + AT_rich Low_complexity Low_complexity 1 24 0 1 1772 21 36 0 0 chr3 155616955 155616983 -3982800 + AT_rich Low_complexity Low_complexity 1 28 0 1 1772 369 0 0 0 chr3 155617258 155617299 -3982484 + (TTA)n Simple_repeat Simple_repeat 2 42 0 1 1772 211 302 95 0 chr3 155617639 155617702 -3982081 - ID4_ SINE ID -10 73 5 1 1772 6471 91 18 6 chr3 155617811 155618722 -3981061 - L1_Mus3 LINE L1 -4 6634 5713 1 1772 7173 122 11 28 chr3 155618721 155620576 -3979207 + L1_Mus3 LINE L1 4659 6480 -158 1 1772 1899 146 191 11 chr3 155620576 155620943 -3978840 + RLTR10C LTR ERVK 1 433 -3 1 1772 7034 96 18 28 chr3 155620943 155621102 -3978681 + L1_Mus3 LINE L1 6481 6633 -5 1 1772 989 236 70 8 chr3 155621107 155621371 -3978412 - RLTR22_Mur LTR ERVK -1016 306 22 1 1772 354 268 21 35 chr3 155622146 155622289 -3977494 - Lx9 LINE L1 -188 7456 7316 1 1772 252 253 0 0 chr3 155622305 155622380 -3977403 + L1_Rod LINE L1 5746 5820 -27 1 1772 269 333 50 42 chr3 155622587 155622706 -3977077 + B3 SINE B2 63 182 -34 1 1772 222 37 0 0 chr3 155622709 155622736 -3977047 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 1772 319 366 59 15 chr3 155622762 155622993 -3976790 + B4A SINE B4 5 279 -13 1 1772 276 280 0 0 chr3 155622997 155623111 -3976672 + (CA)n Simple_repeat Simple_repeat 1 114 0 1 1772 536 225 6 0 chr3 155623113 155623273 -3976510 + (TA)n Simple_repeat Simple_repeat 1 161 0 1 1772 386 252 13 0 chr3 155623238 155623389 -3976394 + (CATATA)n Simple_repeat Simple_repeat 2 154 0 1 1772 365 312 0 13 chr3 155623399 155623555 -3976228 + (CA)n Simple_repeat Simple_repeat 1 154 0 1 1772 497 105 11 0 chr3 155623557 155623652 -3976131 + (TC)n Simple_repeat Simple_repeat 1 96 0 1 1772 220 269 23 93 chr3 155625073 155625159 -3974624 + ID4_ SINE ID 3 82 -1 1 1772 720 261 65 56 chr3 155625430 155625779 -3974004 - RLTR10D LTR ERVK 0 411 1 1 1772 1193 126 38 0 chr3 155626063 155626246 -3973537 + B2_Mm2 SINE B2 1 190 -5 1 1772 1241 102 16 11 chr3 155626250 155626438 -3973345 + B2_Mm2 SINE B2 1 189 -6 1 1772 21 0 0 0 chr3 155626456 155626477 -3973306 + AT_rich Low_complexity Low_complexity 1 21 0 1 1772 21 36 0 0 chr3 155626697 155626725 -3973058 + AT_rich Low_complexity Low_complexity 1 28 0 1 1772 269 217 17 0 chr3 155627474 155627534 -3972249 + (TATG)n Simple_repeat Simple_repeat 4 64 0 1 1772 780 250 0 0 chr3 155627979 155628123 -3971660 - B3 SINE B2 -70 146 3 1 1772 360 277 70 63 chr3 155628810 155628968 -3970815 - RMER15 LTR ERVL -416 159 1 1 1772 331 338 25 38 chr3 155630300 155630457 -3969326 + MLT1A0 LTR MaLR 208 362 -3 1 1772 427 140 0 149 chr3 155631125 155631259 -3968524 + Lx3A LINE L1 6861 6974 -7 1 1772 521 340 146 81 chr3 155631490 155631874 -3967909 - MLT2F LTR ERVL -68 595 187 2 1772 351 302 61 23 chr3 155632234 155632366 -3967417 - ORR1E LTR MaLR -222 137 1 2 1772 1423 311 185 54 chr3 155632366 155633382 -3966401 - ORR1E-int LTR MaLR -53 1527 356 2 1772 3211 58 2 0 chr3 155633382 155633777 -3966006 + MTA_Mm LTR MaLR 1 396 0 2 1772 1423 339 199 40 chr3 155633777 155634097 -3965686 - ORR1E-int LTR MaLR -1225 355 4 2 1772 239 221 33 192 chr3 155634101 155634252 -3965531 - ORR1E LTR MaLR -7 372 246 2 1772 25 31 0 0 chr3 155634752 155634784 -3964999 + AT_rich Low_complexity Low_complexity 1 32 0 2 1772 405 0 0 0 chr3 155635257 155635302 -3964481 + (TG)n Simple_repeat Simple_repeat 2 46 0 2 1772 548 152 10 0 chr3 155635952 155636051 -3963732 - URR1B DNA MER1_type -43 182 83 2 1772 495 268 136 42 chr3 155636490 155636798 -3962985 + Lx8 LINE L1 7127 7463 -10 2 1772 255 79 0 0 chr3 155636827 155636865 -3962918 + (CA)n Simple_repeat Simple_repeat 2 39 0 2 1772 289 280 19 74 chr3 155637921 155638029 -3961754 + B3A SINE B2 2 103 -95 2 1772 238 215 197 15 chr3 155638138 155638204 -3961579 + B4A SINE B4 188 265 -27 2 1772 321 390 135 2 chr3 155639808 155639956 -3959827 + B3A SINE B2 1 165 -51 2 1772 512 116 12 0 chr3 155639956 155640042 -3959741 + (CA)n Simple_repeat Simple_repeat 2 88 0 2 1772 4581 81 0 0 chr3 155640346 155640960 -3958823 - L1_Mus1 LINE L1 -78 5805 5192 2 1772 5603 68 26 0 chr3 155640960 155641695 -3958088 + L1_Mus1 LINE L1 5814 6567 0 2 1772 1323 251 148 13 chr3 155641905 155642377 -3957406 - Lx7 LINE L1 -172 7524 6989 2 1772 447 231 0 0 chr3 155642511 155642619 -3957164 + (CA)n Simple_repeat Simple_repeat 1 108 0 2 1772 182 246 16 0 chr3 155643170 155643231 -3956552 + (CA)n Simple_repeat Simple_repeat 2 63 0 2 1772 257 307 28 47 chr3 155644272 155644378 -3955405 + RMER15 LTR ERVL 317 420 -155 2 1772 442 171 16 0 chr3 155644462 155644585 -3955198 + CT-rich Low_complexity Low_complexity 2 126 0 2 1772 253 308 62 20 chr3 155644672 155644818 -3954965 - L1ME1 LINE L1 -28 6151 6000 2 1772 30 27 0 0 chr3 155644953 155644990 -3954793 + AT_rich Low_complexity Low_complexity 1 37 0 2 1772 246 352 82 0 chr3 155645387 155645509 -3954274 - MER20 DNA MER1_type -24 195 64 2 1772 33 85 0 0 chr3 155646143 155646225 -3953558 + AT_rich Low_complexity Low_complexity 1 82 0 2 1772 2435 179 63 2 chr3 155646551 155647045 -3952738 - RLTR28 LTR ERVL 0 524 1 2 1772 25 31 0 0 chr3 155647147 155647179 -3952604 + AT_rich Low_complexity Low_complexity 1 32 0 2 1772 299 250 37 12 chr3 155647346 155647427 -3952356 + LTR55 LTR ERV 38 120 -428 2 1772 647 316 119 20 chr3 155647457 155647760 -3952023 + LTR55 LTR ERV 212 544 -4 2 1772 2663 157 13 103 chr3 155648526 155649137 -3950646 - RLTR31B_Mm LTR ERVK -1 556 1 2 1772 357 24 0 0 chr3 155649367 155649409 -3950374 + (TG)n Simple_repeat Simple_repeat 1 42 0 2 1772 375 334 78 102 chr3 155649656 155650273 -3949510 - L1MEc LINE L1 -5432 968 367 2 1772 1186 271 140 3 chr3 155650606 155650928 -3948855 - MTD LTR MaLR -36 383 18 2 1772 222 263 13 13 chr3 155652735 155652812 -3946971 + (TA)n Simple_repeat Simple_repeat 1 77 0 2 1772 486 246 10 0 chr3 155653760 155653894 -3945889 - B1_Mur1 SINE Alu 0 149 13 2 1772 4977 135 42 6 chr3 155653987 155654807 -3944976 + Lx2 LINE L1 6149 6997 0 2 1772 1050 143 36 18 chr3 155655088 155655309 -3944474 - Lx2 LINE L1 -1 6996 6772 2 1772 550 309 148 21 chr3 155655448 155655779 -3944004 + Lx8 LINE L1 7073 7445 -28 2 1772 279 0 0 0 chr3 155659423 155659454 -3940329 + (CA)n Simple_repeat Simple_repeat 2 32 0 2 1772 389 240 115 0 chr3 155660407 155660503 -3939280 + B3A SINE B2 1 107 -91 2 1772 838 123 19 19 chr3 155660505 155660688 -3939095 + L1_Mus3 LINE L1 6466 6638 0 2 1772 322 298 86 48 chr3 155660706 155660893 -3938890 + B3A SINE B2 1 194 -4 2 1772 518 29 43 0 chr3 155661642 155661712 -3938071 + (CATATA)n Simple_repeat Simple_repeat 2 74 0 2 1772 390 42 0 0 chr3 155661715 155661763 -3938020 + (TG)n Simple_repeat Simple_repeat 2 49 0 2 1772 401 307 67 11 chr3 155662718 155663031 -3936752 - L1M3 LINE L1 -739 5429 5098 2 1772 1907 271 75 39 chr3 155663083 155663644 -3936139 - MMAR1 DNA Mariner -21 1265 685 2 1772 320 390 51 19 chr3 155664052 155664266 -3935517 - MLT1I LTR MaLR -120 291 71 2 1772 293 263 20 31 chr3 155664564 155664662 -3935121 + Lx8 LINE L1 6346 6442 -1031 2 1772 1008 299 36 9 chr3 155664660 155664997 -3934786 + Lx8 LINE L1 6552 6897 -576 2 1772 247 279 0 14 chr3 155664997 155665066 -3934717 + (CATATA)n Simple_repeat Simple_repeat 5 72 0 2 1772 830 243 9 59 chr3 155665741 155665960 -3933823 - B3 SINE B2 -5 211 4 2 1772 2685 61 0 9 chr3 155667370 155667716 -3932067 - L1_Mus2 LINE L1 -636 5930 5588 2 1772 3521 69 4 21 chr3 155667717 155668202 -3931581 + L1_Mus2 LINE L1 6090 6566 0 2 1772 207 0 0 0 chr3 155668424 155668447 -3931336 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 2 1772 1061 160 37 0 chr3 155670385 155670573 -3929210 - B2_Mm2 SINE B2 0 195 1 2 1772 213 319 32 108 chr3 155670848 155671006 -3928777 + MIR SINE MIR 6 151 -111 2 1772 249 240 45 39 chr3 155671285 155671463 -3928320 + (TCTA)n Simple_repeat Simple_repeat 1 179 0 2 1772 1616 211 64 57 chr3 155672168 155672574 -3927209 - MTC LTR MaLR 0 421 13 2 1772 4567 242 25 5 chr3 155672600 155673605 -3926178 + Lx5 LINE L1 6026 7050 0 2 1772 285 228 23 45 chr3 155674180 155674313 -3925470 + (TCTA)n Simple_repeat Simple_repeat 4 133 0 2 1772 202 268 0 51 chr3 155674796 155674855 -3924928 + T-rich Low_complexity Low_complexity 2 57 0 2 1772 312 27 0 0 chr3 155675625 155675662 -3924121 + (CA)n Simple_repeat Simple_repeat 2 38 0 2 1772 501 84 0 0 chr3 155676063 155676134 -3923649 + (TG)n Simple_repeat Simple_repeat 2 72 0 2 1772 3355 23 13 0 chr3 155677976 155678367 -3921416 + MTA_Mm LTR MaLR 1 396 0 2 1772 9559 14 1 3 chr3 155678367 155679467 -3920316 + MTA_Mm-int LTR MaLR 1 1098 0 2 1772 3335 26 13 0 chr3 155679467 155679858 -3919925 + MTA_Mm LTR MaLR 1 396 0 2 1772 384 335 45 30 chr3 155679910 155680110 -3919673 - MER82 DNA MER2_type -373 280 78 2 1772 424 311 0 25 chr3 155680576 155680698 -3919085 + RSINE1 SINE B4 12 130 -35 2 1772 26 0 0 0 chr3 155681788 155681814 -3917969 + AT_rich Low_complexity Low_complexity 1 26 0 2 1772 22 70 0 0 chr3 155681875 155681918 -3917865 + AT_rich Low_complexity Low_complexity 1 43 0 2 1772 2934 188 10 40 chr3 155682514 155683114 -3916669 + RMER6D LTR ERVK 4 585 -135 2 1772 189 74 0 0 chr3 155683446 155683473 -3916310 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2 1772 267 31 0 0 chr3 155684049 155684081 -3915702 + (TTG)n Simple_repeat Simple_repeat 2 33 0 2 1772 3827 209 52 25 chr3 155684081 155685126 -3914657 - Lx4B LINE L1 -5 7053 5920 2 1772 342 0 0 0 chr3 155686011 155686049 -3913734 + (TAA)n Simple_repeat Simple_repeat 2 39 0 2 1772 498 257 194 0 chr3 155686141 155686316 -3913467 - B3 SINE B2 -4 212 4 2 1772 288 0 0 0 chr3 155687840 155687872 -3911911 + (TC)n Simple_repeat Simple_repeat 1 32 0 2 1772 369 319 17 42 chr3 155688370 155688606 -3911177 + Lx8 LINE L1 7242 7471 -2 2 1772 381 109 0 0 chr3 155688890 155688954 -3910829 + (TG)n Simple_repeat Simple_repeat 2 65 0 2 1772 633 319 86 30 chr3 155689417 155689779 -3910004 + Lx8 LINE L1 7083 7464 -9 2 1772 1919 224 127 79 chr3 155690587 155691168 -3908615 + RMER19C LTR ERVK 3 611 0 2 1772 216 289 43 22 chr3 155695974 155696112 -3903671 + (AGTAG)n Simple_repeat Simple_repeat 3 143 0 2 1772 21 36 0 0 chr3 155696315 155696343 -3903440 + AT_rich Low_complexity Low_complexity 1 28 0 2 1772 26 0 0 0 chr3 155696374 155696400 -3903383 + AT_rich Low_complexity Low_complexity 1 26 0 2 1772 200 156 43 43 chr3 155696567 155696614 -3903169 + CT-rich Low_complexity Low_complexity 2 48 0 2 1772 263 314 0 0 chr3 155697087 155697157 -3902626 - ID4 SINE ID -8 75 6 2 1772 25 51 0 0 chr3 155697707 155697746 -3902037 + AT_rich Low_complexity Low_complexity 1 39 0 2 1772 8449 40 1 2 chr3 155698306 155699924 -3899859 - L1Md_F3 LINE L1 0 6584 4969 2 1772 284 290 29 48 chr3 155699927 155700032 -3899751 - B1F SINE Alu -21 128 26 2 1772 227 303 30 10 chr3 155700062 155700162 -3899621 + MLT1A1 LTR MaLR 291 392 -16 2 1772 1477 141 36 12 chr3 155700235 155700486 -3899297 - Lx LINE L1 0 6654 6398 2 1772 420 20 0 0 chr3 155700945 155700994 -3898789 + (TAAA)n Simple_repeat Simple_repeat 4 52 0 2 1772 375 261 43 0 chr3 155701177 155701269 -3898514 + RSINE1 SINE B4 47 142 -23 2 1772 22 0 0 0 chr3 155701475 155701497 -3898286 + AT_rich Low_complexity Low_complexity 1 22 0 2 1772 180 0 0 0 chr3 155701535 155701555 -3898228 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 2 1772 315 0 0 0 chr3 155701916 155701951 -3897832 + (TA)n Simple_repeat Simple_repeat 2 36 0 2 1772 23 78 0 0 chr3 155702095 155702146 -3897637 + AT_rich Low_complexity Low_complexity 1 51 0 2 1772 189 254 0 0 chr3 155702798 155702869 -3896914 + (TATG)n Simple_repeat Simple_repeat 4 74 0 2 1772 258 319 35 0 chr3 155702880 155702993 -3896790 + (TG)n Simple_repeat Simple_repeat 2 118 0 2 1772 345 275 75 0 chr3 155703038 155703118 -3896665 + RSINE1 SINE B4 76 161 -4 2 1772 909 35 48 0 chr3 155703825 155703970 -3895813 + (TAGA)n Simple_repeat Simple_repeat 1 152 0 2 1772 411 21 0 0 chr3 155704470 155704518 -3895265 + (TA)n Simple_repeat Simple_repeat 2 49 0 2 1772 358 180 79 18 chr3 155705936 155706100 -3893683 + (TAGA)n Simple_repeat Simple_repeat 4 177 0 2 1772 1290 218 75 0 chr3 155706964 155707258 -3892525 + Lx4A LINE L1 556 871 -6215 2 1772 9153 112 44 78 chr3 155707606 155708628 -3891155 + Lx4A LINE L1 867 1781 -4096 2 1772 3210 45 0 25 chr3 155708628 155709034 -3890749 - MTA_Mm LTR MaLR 0 396 1 2 1772 9153 111 29 109 chr3 155709034 155710291 -3889492 + Lx4A LINE L1 1782 3018 -2859 2 1772 5433 117 25 6 chr3 155710286 155711089 -3888694 + Lx3C LINE L1 6086 6903 -73 2 1772 187 156 0 99 chr3 155711104 155711175 -3888608 + A-rich Low_complexity Low_complexity 1 64 0 2 1772 2658 131 31 21 chr3 155711175 155711651 -3888132 + Lx4A LINE L1 3046 3526 -2351 2 221 15476 44 1 1 chr3 155711673 155714274 -3885509 - L1Md_F3 LINE L1 -14 6570 3970 2 1773 814 129 0 0 chr3 155714271 155714410 -3885373 + Lx4A LINE L1 3523 3661 -2216 2 1773 8883 142 17 6 chr3 155714407 155716337 -3883446 + Lx4A LINE L1 5092 7056 -2 2 1773 2721 230 55 22 chr3 155716357 155717029 -3882754 - Lx9 LINE L1 -709 6935 6242 3 1773 2115 128 59 11 chr3 155717348 155717704 -3882079 + Lx3B LINE L1 6597 6969 -4 3 1773 909 112 33 12 chr3 155718964 155719386 -3880397 + (TAGA)n Simple_repeat Simple_repeat 1 430 0 3 1773 1104 59 0 0 chr3 155719964 155720099 -3879684 + B1_Mm SINE Alu 1 135 -12 3 1773 381 43 0 0 chr3 155720099 155720146 -3879637 + (TAAA)n Simple_repeat Simple_repeat 1 47 0 3 1773 227 356 78 69 chr3 155720248 155720465 -3879318 + ORR1E LTR MaLR 19 237 -122 3 1773 826 359 88 52 chr3 155721344 155722004 -3877779 + MTE-int LTR MaLR 842 1525 -55 3 1773 334 347 56 0 chr3 155722235 155722431 -3877352 + L1MC LINE L1 4189 4395 -1751 3 1773 398 301 150 28 chr3 155722712 155723071 -3876712 + L1MC LINE L1 4465 4867 -1279 3 1773 917 251 38 38 chr3 155723135 155723478 -3876305 + RLTR15 LTR ERVK 1 343 -16 3 1773 942 215 31 5 chr3 155723589 155723800 -3875983 + ORR1C1 LTR MaLR 149 360 -18 3 1773 4085 76 2 9 chr3 155724233 155724788 -3874995 + L1Md_F2 LINE L1 5992 6542 -40 3 1773 407 63 0 16 chr3 155724788 155724852 -3874931 + (TAAA)n Simple_repeat Simple_repeat 1 63 0 3 1773 363 313 7 13 chr3 155725685 155725834 -3873949 + L1MC LINE L1 5247 5394 -752 3 1773 22 0 0 0 chr3 155725994 155726016 -3873767 + AT_rich Low_complexity Low_complexity 1 22 0 3 1773 447 335 38 5 chr3 155729254 155729440 -3870343 - MER58A DNA MER1_type -19 205 14 3 1773 630 0 0 0 chr3 155730101 155730171 -3869612 + (GGAA)n Simple_repeat Simple_repeat 3 72 0 3 1773 1261 164 43 4 chr3 155730361 155730593 -3869190 - Lx5 LINE L1 -1 7049 6809 3 1773 239 79 26 0 chr3 155730746 155730784 -3868999 + (TG)n Simple_repeat Simple_repeat 2 40 0 3 1773 1599 230 35 27 chr3 155731444 155731846 -3867937 - MTD LTR MaLR -8 411 7 3 1773 22 35 0 0 chr3 155733844 155733873 -3865910 + AT_rich Low_complexity Low_complexity 1 29 0 3 1773 251 181 56 118 chr3 155734411 155734555 -3865228 - RMER17D LTR ERVK -375 514 380 3 1773 208 158 35 0 chr3 155734780 155734837 -3864946 + (TA)n Simple_repeat Simple_repeat 2 60 0 3 1773 282 119 59 12 chr3 155735994 155736079 -3863704 + (TATATG)n Simple_repeat Simple_repeat 4 92 0 3 1773 286 359 53 8 chr3 155736100 155736232 -3863551 - B3 SINE B2 -15 201 64 3 1773 22 0 0 0 chr3 155736390 155736412 -3863371 + AT_rich Low_complexity Low_complexity 1 22 0 3 1773 3897 83 85 7 chr3 155737655 155737718 -3862065 - L1_Mus3 LINE L1 0 6638 6540 3 1773 270 0 0 0 chr3 155737718 155737748 -3862035 + (CCCCCT)n Simple_repeat Simple_repeat 1 30 0 3 1773 3897 83 85 7 chr3 155737748 155738275 -3861508 - L1_Mus3 LINE L1 -99 6539 6003 3 1773 3966 32 0 0 chr3 155738405 155738866 -3860917 - L1Md_F2 LINE L1 -15 6567 6107 3 1773 1733 154 60 135 chr3 155739282 155739718 -3860065 - Lx4A LINE L1 -791 6267 5865 3 1773 2416 152 26 35 chr3 155739718 155740174 -3859609 + Lx4A LINE L1 6596 7047 -11 3 1773 221 203 47 0 chr3 155740211 155740275 -3859508 + GA-rich Low_complexity Low_complexity 2 68 0 3 1773 711 278 35 35 chr3 155741393 155741591 -3858192 + B3A SINE B2 1 198 0 3 1773 27 0 0 0 chr3 155741636 155741663 -3858120 + AT_rich Low_complexity Low_complexity 1 27 0 3 1773 228 239 0 0 chr3 155743514 155743560 -3856223 + PB1 SINE Alu 56 101 -26 3 1773 23 33 0 0 chr3 155744579 155744609 -3855174 + AT_rich Low_complexity Low_complexity 1 30 0 3 1773 304 333 0 0 chr3 155744617 155744686 -3855097 + ID4_ SINE ID 12 80 -3 3 1773 3591 215 62 34 chr3 155744710 155745570 -3854213 + Lx5 LINE L1 6167 7050 0 3 1773 23 33 0 0 chr3 155746775 155746805 -3852978 + AT_rich Low_complexity Low_complexity 1 30 0 3 1773 24 0 0 0 chr3 155747328 155747352 -3852431 + AT_rich Low_complexity Low_complexity 1 24 0 3 1773 1121 129 27 0 chr3 155747372 155747558 -3852225 + B2_Mm1t SINE B2 2 192 -1 3 1773 21 36 0 0 chr3 155749404 155749432 -3850351 + AT_rich Low_complexity Low_complexity 1 28 0 3 1773 225 212 56 70 chr3 155751008 155751079 -3848704 + MTEa LTR MaLR 298 367 -12 3 1773 28 48 0 0 chr3 155751977 155752019 -3847764 + AT_rich Low_complexity Low_complexity 1 42 0 3 1773 22 35 0 0 chr3 155752039 155752068 -3847715 + AT_rich Low_complexity Low_complexity 1 29 0 3 1773 180 237 79 0 chr3 155752896 155752934 -3846849 + MER5A DNA MER1_type 106 146 -43 3 1773 446 287 109 39 chr3 155753350 155753734 -3846049 - L1MA8 LINE L1 -14 6277 5867 3 1773 4644 52 3 3 chr3 155753894 155754475 -3845308 - L1Md_F3 LINE L1 -14 6570 5990 3 1773 22 0 0 0 chr3 155754478 155754500 -3845283 + AT_rich Low_complexity Low_complexity 1 22 0 3 1773 797 281 91 19 chr3 155754803 155755111 -3844672 + Lx6 LINE L1 7120 7449 -11 3 1773 356 0 0 22 chr3 155755158 155755203 -3844580 + (TTA)n Simple_repeat Simple_repeat 2 45 0 3 1773 2949 179 52 21 chr3 155756399 155756974 -3842809 + RLTR17 LTR ERVK 98 690 -2 3 1773 451 296 68 27 chr3 155757313 155757453 -3842330 + B4 SINE B4 4 149 -143 3 1773 729 93 0 0 chr3 155757453 155757560 -3842223 + (TTTC)n Simple_repeat Simple_repeat 2 108 0 3 1773 207 0 0 0 chr3 155757565 155757588 -3842195 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 3 1773 1133 68 0 51 chr3 155757592 155757608 -3842175 - B1_Mus1 SINE Alu 0 148 140 3 1773 207 0 0 0 chr3 155757608 155757631 -3842152 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 3 1773 1133 68 0 51 chr3 155757631 155757770 -3842013 - B1_Mus1 SINE Alu -9 139 1 3 1773 680 303 103 18 chr3 155758975 155759374 -3840409 + Lx7 LINE L1 6870 7302 -394 3 1773 232 209 11 11 chr3 155759388 155759480 -3840303 + CT-rich Low_complexity Low_complexity 1 92 0 3 1773 324 0 0 0 chr3 155759480 155759516 -3840267 + (TG)n Simple_repeat Simple_repeat 2 37 0 3 1773 23 54 0 0 chr3 155759691 155759728 -3840055 + AT_rich Low_complexity Low_complexity 1 37 0 3 1773 459 0 0 0 chr3 155759803 155759854 -3839929 + (TG)n Simple_repeat Simple_repeat 2 52 0 3 1773 247 310 117 58 chr3 155759877 155759900 -3839883 - B3 SINE B2 -13 203 184 3 1773 219 69 0 0 chr3 155759900 155759929 -3839854 + (TG)n Simple_repeat Simple_repeat 2 30 0 3 1773 285 266 269 14 chr3 155759929 155760074 -3839709 - B3A SINE B2 -33 183 5 3 1773 189 121 0 0 chr3 155760753 155760786 -3838997 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 3 1773 295 333 78 16 chr3 155761176 155761199 -3838584 - B1F1 SINE Alu -11 138 3 3 1773 330 288 48 9 chr3 155761199 155761304 -3838479 - ID_B1 SINE B4 -32 192 84 3 1773 373 274 114 36 chr3 155762328 155762468 -3837315 + RSINE1 SINE B4 2 152 -13 3 1773 265 281 144 86 chr3 155762468 155762515 -3837268 + B3A SINE B2 1 198 0 3 1773 1576 221 43 74 chr3 155762812 155763232 -3836551 + MTD LTR MaLR 5 411 -8 3 1773 23 78 0 0 chr3 155763930 155763981 -3835802 + AT_rich Low_complexity Low_complexity 1 51 0 3 1773 774 32 0 0 chr3 155764293 155764386 -3835397 + (TTC)n Simple_repeat Simple_repeat 3 95 0 3 1773 180 0 0 0 chr3 155764386 155764406 -3835377 + (TC)n Simple_repeat Simple_repeat 2 21 0 3 1773 6553 167 63 8 chr3 155765119 155766498 -3833285 - Lx3C LINE L1 -2 6974 5501 3 1773 414 53 0 0 chr3 155766773 155766830 -3832953 + (CA)n Simple_repeat Simple_repeat 2 58 0 3 1773 709 265 67 8 chr3 155767414 155767647 -3832136 + ORR1D1 LTR MaLR 1 251 -108 3 1773 1511 126 98 8 chr3 155767719 155767983 -3831800 + L1_Mus3 LINE L1 6350 6637 -1 3 1773 297 0 0 0 chr3 155768184 155768217 -3831566 + (TG)n Simple_repeat Simple_repeat 2 34 0 3 1773 835 296 107 10 chr3 155768404 155768694 -3831089 + ORR1D2 LTR MaLR 53 370 0 3 1773 25 0 0 0 chr3 155769540 155769565 -3830218 + AT_rich Low_complexity Low_complexity 1 25 0 3 1773 219 304 11 11 chr3 155769686 155769779 -3830004 + (TG)n Simple_repeat Simple_repeat 2 94 0 3 1773 482 114 0 12 chr3 155769779 155769859 -3829924 + (CA)n Simple_repeat Simple_repeat 2 80 0 3 1773 27160 129 41 2 chr3 155770306 155773369 -3826414 - L1_Mus3 LINE L1 -7 6631 3478 3 1773 252 0 0 0 chr3 155773369 155773397 -3826386 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 3 1773 27160 137 35 10 chr3 155773397 155776370 -3823413 - L1_Mus3 LINE L1 -2406 3477 390 3 1773 216 277 61 15 chr3 155776713 155776779 -3823004 - B4 SINE B4 -222 70 2 3 1773 440 293 98 0 chr3 155776878 155777011 -3822772 + B3 SINE B2 65 210 -6 3 1773 240 340 83 7 chr3 155777578 155777723 -3822060 - MLT1A LTR MaLR -26 523 368 3 1773 549 150 0 0 chr3 155778454 155778554 -3821229 + (TG)n Simple_repeat Simple_repeat 1 100 0 3 1773 349 309 37 53 chr3 155778772 155778960 -3820823 - MLT1A LTR MaLR -16 358 174 3 1773 25 51 0 0 chr3 155779937 155779976 -3819807 + AT_rich Low_complexity Low_complexity 1 39 0 3 1773 409 144 11 11 chr3 155780656 155780747 -3819036 + CT-rich Low_complexity Low_complexity 1 91 0 3 1773 447 308 25 0 chr3 155781453 155781573 -3818210 + B3A SINE B2 1 123 -75 3 1773 1138 93 54 16 chr3 155781640 155781826 -3817957 + L1_Mus3 LINE L1 6441 6633 -5 3 1773 232 329 64 0 chr3 155783582 155783722 -3816061 - L1M2 LINE L1 -379 5921 5773 3 1773 324 0 0 161 chr3 155785229 155785397 -3814386 + (CAGAG)n Simple_repeat Simple_repeat 5 145 0 3 1773 268 173 38 62 chr3 155785400 155785480 -3814303 + PB1D7 SINE Alu 42 119 -1 3 1773 229 355 144 6 chr3 155786725 155786892 -3812891 + MIRc SINE MIR 51 240 -28 3 1773 473 343 84 30 chr3 155787602 155787839 -3811944 - B4 SINE B4 -42 250 1 3 1773 1462 137 122 0 chr3 155788013 155788291 -3811492 - ORR1B1-int LTR MaLR -69 1440 1129 3 1773 516 335 7 28 chr3 155788478 155788659 -3811124 - B3A SINE B2 -22 173 5 3 1773 312 354 0 0 chr3 155789363 155789462 -3810321 + B1F SINE Alu 10 108 -41 3 1773 326 240 96 45 chr3 155789995 155790152 -3809631 + L1MA6 LINE L1 6067 6231 -69 3 1773 592 302 95 59 chr3 155790169 155790475 -3809308 - MTE2a LTR MaLR 0 379 63 3 1773 2070 123 7 0 chr3 155790865 155791174 -3808609 + ORR1A2 LTR MaLR 1 311 -16 4 1773 216 306 28 0 chr3 155792494 155792566 -3807217 + ID SINE ID 1 74 -150 4 1773 625 219 85 18 chr3 155793236 155793459 -3806324 - Lx9 LINE L1 -48 7596 7359 4 1773 655 235 109 27 chr3 155793463 155793611 -3806172 + MT2A LTR ERVL 1 145 -388 4 1773 504 93 0 30 chr3 155793611 155793711 -3806072 + (TA)n Simple_repeat Simple_repeat 1 97 0 4 1773 655 235 109 27 chr3 155793711 155793746 -3806037 + MT2A LTR ERVL 146 199 -334 4 1773 771 251 165 4 chr3 155794631 155794879 -3804904 - MTD LTR MaLR -2 417 130 4 1773 7599 90 12 13 chr3 155794881 155796161 -3803622 + L1_Mus3 LINE L1 5360 6633 -5 4 1773 206 118 0 0 chr3 155796161 155796195 -3803588 + (GA)n Simple_repeat Simple_repeat 1 34 0 4 1773 428 382 13 0 chr3 155796276 155796428 -3803355 - RSINE1 SINE B4 0 165 12 4 1773 240 59 0 0 chr3 155796447 155796481 -3803302 + (TTTTTG)n Simple_repeat Simple_repeat 2 35 0 4 1773 1980 193 57 20 chr3 155796754 155797156 -3802627 + Lx6 LINE L1 7034 7450 -10 4 1773 180 111 0 0 chr3 155798335 155798362 -3801421 + (GA)n Simple_repeat Simple_repeat 2 28 0 4 1773 756 61 0 0 chr3 155799809 155799907 -3799876 + (TTCC)n Simple_repeat Simple_repeat 3 100 0 4 1773 23 0 0 0 chr3 155800115 155800138 -3799645 + AT_rich Low_complexity Low_complexity 1 23 0 4 1773 432 0 0 0 chr3 155801328 155801376 -3798407 + (TG)n Simple_repeat Simple_repeat 2 49 0 4 1773 288 266 69 29 chr3 155802261 155802430 -3797353 - L1M2 LINE L1 -484 5807 5637 4 1773 22 35 0 0 chr3 155802544 155802573 -3797210 + AT_rich Low_complexity Low_complexity 1 29 0 4 1773 323 196 88 2 chr3 155802602 155802696 -3797087 + L1MA5 LINE L1 6198 6299 -1 4 1773 28 29 0 0 chr3 155803930 155803965 -3795818 + AT_rich Low_complexity Low_complexity 1 35 0 4 1773 258 203 16 0 chr3 155804001 155804065 -3795718 + CT-rich Low_complexity Low_complexity 2 66 0 4 1773 442 274 32 105 chr3 155806038 155806317 -3793466 + Lx8 LINE L1 5621 5881 -1592 4 1773 675 46 0 0 chr3 155806343 155806430 -3793353 + (TG)n Simple_repeat Simple_repeat 1 87 0 4 1773 2078 56 0 50 chr3 155806688 155806987 -3792796 - RLTR10B LTR ERVK 0 292 9 4 1773 324 48 0 0 chr3 155807009 155807051 -3792732 - RLTR10B LTR ERVK -250 42 1 4 1773 281 47 23 0 chr3 155807354 155807397 -3792386 + (TTAA)n Simple_repeat Simple_repeat 1 44 0 4 1773 370 399 60 17 chr3 155807613 155808080 -3791703 + ERVL-E-int LTR ERVL 2531 3017 -2650 4 1773 246 359 43 17 chr3 155808859 155809068 -3790715 + MLT2B1 LTR ERVL 52 273 -283 4 1773 7950 41 21 0 chr3 155811075 155812115 -3787668 - L1Md_F2 LINE L1 0 6582 5524 4 1773 189 0 0 0 chr3 155812231 155812252 -3787531 + (CA)n Simple_repeat Simple_repeat 2 22 0 4 1773 241 270 13 26 chr3 155812824 155812900 -3786883 + GA-rich Low_complexity Low_complexity 2 76 0 4 1773 1563 285 30 5 chr3 155814157 155814559 -3785224 - MTD LTR MaLR -2 417 6 4 1773 655 254 239 25 chr3 155814716 155814986 -3784797 - ORR1D2 LTR MaLR -9 361 34 4 1773 877 286 60 22 chr3 155816180 155816545 -3783238 - MTE2a LTR MaLR 0 379 1 4 1773 1046 77 21 0 chr3 155816658 155816801 -3782982 - B1_Mm SINE Alu 0 147 2 4 1773 324 339 61 39 chr3 155818040 155818221 -3781562 - LTR16E1 LTR ERVL -38 500 316 4 1773 7091 133 14 2 chr3 155819440 155821329 -3778454 - L1_Mus4 LINE L1 0 6636 4825 4 1773 2798 129 11 0 chr3 155821327 155821767 -3778016 + L1_Mus4 LINE L1 4305 4749 -1134 4 1773 345 319 75 45 chr3 155822310 155822612 -3777171 + MLT1A LTR MaLR 30 353 -21 4 1773 1101 214 114 57 chr3 155822759 155823145 -3776638 - Lx9 LINE L1 -20 7624 7217 4 1773 927 245 10 0 chr3 155823211 155823419 -3776364 - Lx9 LINE L1 -630 7014 6805 4 1773 186 191 0 0 chr3 155823617 155823659 -3776124 + (TGGA)n Simple_repeat Simple_repeat 1 42 0 4 1773 26 50 0 0 chr3 155823871 155823911 -3775872 + AT_rich Low_complexity Low_complexity 1 40 0 4 1773 339 25 0 0 chr3 155824429 155824469 -3775314 + (TTTA)n Simple_repeat Simple_repeat 2 41 0 4 1773 1749 194 114 40 chr3 155824503 155824932 -3774851 - L1_Mus4 LINE L1 0 6636 6176 4 1773 1223 107 102 0 chr3 155824975 155825172 -3774611 + L1Md_F2 LINE L1 6354 6570 -12 4 1773 8395 112 49 0 chr3 155826526 155828874 -3770909 - L1Md_F LINE L1 -3025 2861 302 4 1773 454 282 222 54 chr3 155829438 155829861 -3769922 - L1MEg LINE L1 -4577 1838 1327 4 1773 380 346 65 25 chr3 155830115 155830471 -3769312 - L1MEg LINE L1 -5531 869 500 4 1773 606 270 47 93 chr3 155831208 155831572 -3768211 + RLTR11B LTR ERVK 1 347 -106 4 1773 336 188 0 0 chr3 155832648 155832717 -3767066 + (CA)n Simple_repeat Simple_repeat 2 70 0 4 1773 435 87 0 0 chr3 155832718 155832787 -3766996 + (TC)n Simple_repeat Simple_repeat 2 70 0 4 1773 300 91 0 0 chr3 155832787 155832831 -3766952 + (CA)n Simple_repeat Simple_repeat 1 44 0 4 1773 911 304 77 41 chr3 155833055 155833395 -3766388 - ORR1E LTR MaLR -5 354 3 4 1773 1277 301 97 23 chr3 155834114 155834600 -3765183 - Lx8 LINE L1 -192 7281 6760 4 1773 1064 97 7 0 chr3 155836667 155836812 -3762971 + B1_Mus1 SINE Alu 3 148 0 4 1773 180 0 0 0 chr3 155836822 155836842 -3762941 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 4 1773 262 181 222 0 chr3 155836884 155836956 -3762827 - Lx6 LINE L1 -193 7267 7180 4 1773 868 128 28 7 chr3 155837238 155837380 -3762403 + MTB_Mm LTR MaLR 70 214 -193 4 1773 2937 95 12 0 chr3 155837902 155838303 -3761480 + MTB_Mm LTR MaLR 2 407 0 4 1773 459 161 46 0 chr3 155840135 155840222 -3759561 - B3 SINE B2 -1 215 125 4 1773 2100 97 18 30 chr3 155840950 155841279 -3758504 + IAPLTR2b LTR ERVK 1 325 -2 4 1773 24523 40 22 21 chr3 155841279 155844348 -3755435 + IAPEz-int LTR ERVK 3 3076 -3405 4 221 6518 58 12 18 chr3 155844334 155845189 -3754594 + IAPEz-int LTR ERVK 5630 6479 -2 4 1774 2100 97 18 30 chr3 155845191 155845520 -3754263 + IAPLTR2b LTR ERVK 1 325 -2 4 1774 363 252 19 46 chr3 155846584 155846692 -3753091 + PB1D7 SINE Alu 16 120 0 4 1774 680 117 43 0 chr3 155846698 155846861 -3752922 + (TAGA)n Simple_repeat Simple_repeat 1 170 0 4 1774 716 138 39 15 chr3 155846880 155847213 -3752570 + (TAGA)n Simple_repeat Simple_repeat 1 341 0 4 1774 189 0 0 0 chr3 155847342 155847363 -3752420 + (A)n Simple_repeat Simple_repeat 1 21 0 4 1774 279 275 32 42 chr3 155847660 155847755 -3752028 + B3A SINE B2 3 96 -102 4 1774 35 41 0 0 chr3 155847848 155847897 -3751886 + AT_rich Low_complexity Low_complexity 1 49 0 4 1774 359 252 259 9 chr3 155849507 155849623 -3750160 + B1F SINE Alu 3 147 -2 4 1774 414 0 0 0 chr3 155849623 155849669 -3750114 + (CA)n Simple_repeat Simple_repeat 1 46 0 4 1774 817 109 0 26 chr3 155849670 155849821 -3749962 + (CAGAGA)n Simple_repeat Simple_repeat 2 148 0 4 1774 675 0 0 0 chr3 155849821 155849896 -3749887 + (GGGAA)n Simple_repeat Simple_repeat 4 78 0 4 1774 3029 49 31 3 chr3 155852624 155853010 -3746773 + L1Md_F2 LINE L1 5190 5586 -297 4 1774 8330 32 1 6 chr3 155853012 155854011 -3745772 + L1Md_F2 LINE L1 5589 6582 0 4 1774 2289 104 148 0 chr3 155854067 155854431 -3745352 - BGLII_Mus LTR ERVK 0 422 5 4 1774 401 312 128 0 chr3 155854926 155855051 -3744732 - ID_B1 SINE B4 -4 220 80 4 1774 229 211 53 53 chr3 155855773 155855848 -3743935 + L1MC4a LINE L1 6579 6653 -1229 4 1774 284 329 0 23 chr3 155858227 155858314 -3741469 + RSINE1 SINE B4 81 165 0 4 1774 1655 205 58 14 chr3 155859292 155859638 -3740145 - MTC LTR MaLR -60 361 1 4 1774 495 0 0 0 chr3 155859720 155859775 -3740008 + (TG)n Simple_repeat Simple_repeat 2 56 0 4 1774 1148 36 0 0 chr3 155859775 155859912 -3739871 - B1_Mus2 SINE Alu -10 137 1 4 1774 333 0 0 0 chr3 155859914 155859951 -3739832 + (TG)n Simple_repeat Simple_repeat 2 38 0 4 1774 248 372 32 11 chr3 155860002 155860097 -3739686 - PB1D10 SINE Alu -8 109 13 4 1774 21 0 0 0 chr3 155860155 155860176 -3739607 + AT_rich Low_complexity Low_complexity 1 21 0 4 1774 232 288 14 0 chr3 155860449 155860522 -3739261 - RMER5 LTR ERV1 -30 504 431 4 1774 442 263 43 43 chr3 155860626 155860765 -3739018 - ID_B1 SINE B4 -1 223 85 4 1774 384 296 152 3 chr3 155861479 155861815 -3737968 - L1MA6 LINE L1 -370 5930 5500 4 1774 3859 158 159 88 chr3 155862492 155863452 -3736331 - RLTR25B LTR ERVK 0 1028 1 4 1774 261 75 0 0 chr3 155864422 155864462 -3735321 + (A)n Simple_repeat Simple_repeat 1 40 0 4 1774 21 36 0 0 chr3 155864528 155864556 -3735227 + AT_rich Low_complexity Low_complexity 1 28 0 4 1774 927 81 0 0 chr3 155864629 155864752 -3735031 + B1_Mus1 SINE Alu 25 147 -1 4 1774 232 170 0 0 chr3 155864753 155864800 -3734983 + A-rich Low_complexity Low_complexity 1 47 0 4 1774 198 0 0 0 chr3 155864800 155864822 -3734961 + (TG)n Simple_repeat Simple_repeat 1 22 0 4 1774 339 25 0 0 chr3 155864822 155864861 -3734922 + (GA)n Simple_repeat Simple_repeat 1 40 0 4 1774 247 232 86 136 chr3 155865093 155865313 -3734470 - MER31A LTR ERV1 -76 409 201 4 1774 603 213 0 0 chr3 155866694 155866830 -3732953 + (TATATG)n Simple_repeat Simple_repeat 4 139 0 4 1774 1039 118 11 11 chr3 155866833 155867013 -3732770 + (TATG)n Simple_repeat Simple_repeat 1 180 0 4 1774 648 343 32 24 chr3 155867229 155867480 -3732303 + MTE2b LTR MaLR 1 253 -126 4 1774 1708 99 128 4 chr3 155867901 155868174 -3731609 - Lx2 LINE L1 -1 6996 6690 4 1774 1852 76 0 0 chr3 155868176 155868413 -3731370 + Lx2 LINE L1 6325 6561 -436 4 1774 255 331 32 95 chr3 155868530 155868720 -3731063 - ORR1E LTR MaLR -147 212 35 4 1774 543 227 78 0 chr3 155869520 155869648 -3730135 - RMER15 LTR ERVL 0 575 438 4 1774 430 312 8 112 chr3 155869643 155869892 -3729891 - RMER15 LTR ERVL -349 226 4 4 1774 442 165 64 0 chr3 155870178 155870287 -3729496 + Lx2 LINE L1 6882 6997 0 4 1774 24 0 0 0 chr3 155873279 155873303 -3726480 + AT_rich Low_complexity Low_complexity 1 24 0 4 1774 1182 48 0 0 chr3 155875022 155875167 -3724616 + B1_Mus1 SINE Alu 3 147 -1 4 1774 543 53 0 0 chr3 155875175 155875250 -3724533 + (GA)n Simple_repeat Simple_repeat 2 76 0 4 1774 289 269 112 27 chr3 155875293 155875480 -3724303 + L1MA6 LINE L1 6016 6218 -82 4 1774 769 217 62 62 chr3 155875551 155875762 -3724021 + ORR1A4 LTR MaLR 1 211 -118 5 1774 533 299 41 86 chr3 155876031 155876251 -3723532 + B3A SINE B2 2 211 -5 5 1774 553 304 76 66 chr3 155877115 155877300 -3722483 + MERVK26-int LTR ERVK 90 275 -6644 5 1774 195 42 0 0 chr3 155877300 155877324 -3722459 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 5 1774 553 304 76 66 chr3 155877324 155877547 -3722236 + MERVK26-int LTR ERVK 276 501 -6418 5 1774 252 0 0 0 chr3 155878133 155878161 -3721622 + (T)n Simple_repeat Simple_repeat 1 28 0 5 1774 374 71 0 51 chr3 155878644 155878703 -3721080 + ORR1A2 LTR MaLR 2 57 -270 5 1774 734 149 12 114 chr3 155878705 155878765 -3721018 - Lx3B LINE L1 -356 6617 6561 5 1774 1583 84 9 4 chr3 155878765 155878992 -3720791 + L1_Mus3 LINE L1 6399 6626 -12 5 1774 734 149 12 114 chr3 155878992 155879098 -3720685 - Lx3B LINE L1 -413 6560 6468 5 1774 547 156 154 15 chr3 155879094 155879224 -3720559 + Lx3A LINE L1 6832 6979 -2 5 1774 23 0 0 0 chr3 155879225 155879248 -3720535 + AT_rich Low_complexity Low_complexity 1 23 0 5 1774 1015 109 0 7 chr3 155879258 155879405 -3720378 + B1_Mus2 SINE Alu 2 147 0 5 1774 1823 100 17 60 chr3 155879406 155879704 -3720079 + ORR1A2 LTR MaLR 43 327 0 5 1774 943 238 122 46 chr3 155879987 155880469 -3719314 + RMER17C-int LTR ERVK 2627 3110 -128 5 1774 295 297 21 32 chr3 155880794 155880888 -3718895 + RMER20B LTR ERVK 1 93 -534 5 1774 312 215 31 0 chr3 155881114 155881179 -3718604 - RMER20B LTR ERVK -560 67 1 5 1774 439 304 43 43 chr3 155881589 155881890 -3717893 + MTE2a LTR MaLR 7 362 -17 5 1774 473 264 8 0 chr3 155881983 155882112 -3717671 - B1F SINE Alu -19 130 1 5 1774 228 67 0 0 chr3 155882499 155882529 -3717254 + (CA)n Simple_repeat Simple_repeat 1 30 0 5 1774 290 187 56 16 chr3 155882695 155882820 -3716963 + (TATATG)n Simple_repeat Simple_repeat 3 132 0 5 1774 1840 234 14 193 chr3 155883320 155884062 -3715721 - RMER19C LTR ERVK 0 611 3 5 1774 24 53 0 0 chr3 155885564 155885602 -3714181 + AT_rich Low_complexity Low_complexity 1 38 0 5 1774 261 0 0 0 chr3 155886167 155886196 -3713587 + (TTG)n Simple_repeat Simple_repeat 2 30 0 5 1774 480 139 0 0 chr3 155886795 155886874 -3712909 + (CA)n Simple_repeat Simple_repeat 2 80 0 5 1774 32 0 0 0 chr3 155887014 155887046 -3712737 + AT_rich Low_complexity Low_complexity 1 32 0 5 1774 1957 154 22 0 chr3 155888456 155888775 -3711008 + ORR1A3 LTR MaLR 1 326 0 5 1774 501 257 0 0 chr3 155890939 155891118 -3708665 + (ATGGTG)n Simple_repeat Simple_repeat 1 179 0 5 1774 573 245 6 41 chr3 155891147 155891317 -3708466 - HAL1-2a_MD LINE L1 -517 2507 2344 5 1774 22 35 0 0 chr3 155891455 155891484 -3708299 + AT_rich Low_complexity Low_complexity 1 29 0 5 1774 352 71 68 51 chr3 155891960 155892019 -3707764 - HAL1-3A_ME LINE L1 -825 2033 1974 5 1774 207 0 0 0 chr3 155892019 155892042 -3707741 + (GA)n Simple_repeat Simple_repeat 1 23 0 5 1774 210 118 0 0 chr3 155892043 155892077 -3707706 + (TG)n Simple_repeat Simple_repeat 2 35 0 5 1774 478 265 56 42 chr3 155892311 155892453 -3707330 - B1_Mur3 SINE Alu 0 149 6 5 1774 189 163 0 0 chr3 155893985 155894034 -3705749 + (CA)n Simple_repeat Simple_repeat 2 50 0 5 1774 305 268 71 134 chr3 155896552 155896664 -3703119 - B3A SINE B2 -96 120 16 5 1774 708 125 19 0 chr3 155897393 155897497 -3702286 + PB1D9 SINE Alu 2 107 -13 5 1774 360 0 0 0 chr3 155897497 155897537 -3702246 + (CAAA)n Simple_repeat Simple_repeat 1 40 0 5 1774 414 0 0 0 chr3 155898076 155898122 -3701661 + (TC)n Simple_repeat Simple_repeat 1 46 0 5 1774 360 0 0 0 chr3 155898122 155898161 -3701622 + (CA)n Simple_repeat Simple_repeat 1 40 0 5 1774 1247 84 0 6 chr3 155898292 155898471 -3701312 + (GAAA)n Simple_repeat Simple_repeat 2 179 0 5 1774 432 82 0 0 chr3 155898471 155898532 -3701251 + (GGAA)n Simple_repeat Simple_repeat 1 61 0 5 1774 1352 299 44 109 chr3 155898568 155898950 -3700833 - Lx7 LINE L1 -371 7325 7017 5 1774 650 105 0 0 chr3 155898950 155899064 -3700719 - Lx3_Mus LINE L1 0 7009 6896 5 1774 1352 299 44 109 chr3 155899064 155899523 -3700260 - Lx7 LINE L1 -680 7016 6539 5 1774 501 277 73 19 chr3 155899635 155899922 -3699861 - Lx7 LINE L1 -1565 5908 5615 5 1774 408 20 0 0 chr3 155899951 155900000 -3699783 + (TG)n Simple_repeat Simple_repeat 1 49 0 5 1774 699 122 0 0 chr3 155900000 155900131 -3699652 + (GA)n Simple_repeat Simple_repeat 2 132 0 5 1774 297 281 10 0 chr3 155900132 155900228 -3699555 + (TATG)n Simple_repeat Simple_repeat 2 98 0 5 1774 22 0 0 0 chr3 155902034 155902056 -3697727 + AT_rich Low_complexity Low_complexity 1 22 0 5 1774 1209 238 142 6 chr3 155902364 155902702 -3697081 - ORR1C2 LTR MaLR 0 384 1 5 1774 392 136 0 15 chr3 155902702 155902769 -3697014 - ORR1C2-int LTR MaLR 0 1509 1444 5 1774 942 211 53 20 chr3 155902786 155903033 -3696750 - Lx5 LINE L1 -3 7047 6793 5 1774 313 179 0 0 chr3 155903034 155903090 -3696693 - ORR1C2-int LTR MaLR -59 1311 1256 5 1774 594 14 0 0 chr3 155903093 155903162 -3696621 - L1Md_F3 LINE L1 -356 6228 6160 5 1774 360 36 0 0 chr3 155903168 155903223 -3696560 + L1Md_F3 LINE L1 6530 6584 0 5 1774 289 227 193 0 chr3 155903228 155903316 -3696467 + Lx5 LINE L1 6893 6997 -53 5 1774 234 0 0 0 chr3 155903342 155903368 -3696415 + (TGAA)n Simple_repeat Simple_repeat 3 28 0 5 1774 1012 96 7 52 chr3 155903395 155903549 -3696234 - B1_Mus1 SINE Alu -1 147 1 5 1774 2464 300 103 50 chr3 155903558 155904716 -3695067 - ORR1C2-int LTR MaLR -98 1272 52 5 1774 253 0 54 0 chr3 155904716 155904753 -3695030 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 5 1774 2464 300 103 50 chr3 155904753 155904803 -3694980 - ORR1C2-int LTR MaLR -1319 51 2 5 1774 1733 200 46 3 chr3 155904805 155905171 -3694612 - ORR1C2 LTR MaLR -2 382 1 5 1774 1298 326 115 29 chr3 155907482 155908474 -3691309 + Lx8 LINE L1 6085 7161 -312 5 1774 333 118 0 0 chr3 155909014 155909065 -3690718 + (TTCA)n Simple_repeat Simple_repeat 3 53 0 5 1774 788 184 14 0 chr3 155909084 155909227 -3690556 - B2_Mm2 SINE B2 -57 159 1 5 1774 248 324 74 30 chr3 155909610 155909906 -3689877 - L1M2 LINE L1 -3554 2589 2281 5 1774 298 234 6 39 chr3 155910691 155910869 -3688914 + (TATG)n Simple_repeat Simple_repeat 2 173 0 5 1774 395 250 11 0 chr3 155910871 155910959 -3688824 + (TG)n Simple_repeat Simple_repeat 1 89 0 5 1774 1976 235 8 183 chr3 155910980 155911700 -3688083 + RMER19C LTR ERVK 1 594 -17 5 1774 5089 56 9 0 chr3 155911701 155912384 -3687399 - L1_Mm LINE L1 -756 5127 4439 5 1774 586 73 21 0 chr3 155912386 155912482 -3687301 + L1Md_F3 LINE L1 6485 6582 -2 5 1774 702 283 75 28 chr3 155912588 155912816 -3686967 + L1M2 LINE L1 4851 5088 -1055 5 1774 200 34 0 33 chr3 155912816 155912846 -3686937 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 5 1774 702 289 76 29 chr3 155912846 155913113 -3686670 + L1M2 LINE L1 5086 5366 -774 5 1774 304 298 102 59 chr3 155913255 155913345 -3686438 + L1M2 LINE L1 5396 5495 -805 5 1774 684 107 0 0 chr3 155913345 155913448 -3686335 + (CA)n Simple_repeat Simple_repeat 2 104 0 5 1774 353 271 88 76 chr3 155913448 155913749 -3686034 + L1M2 LINE L1 5496 5804 -496 5 1774 29 0 0 0 chr3 155914038 155914067 -3685716 + AT_rich Low_complexity Low_complexity 1 29 0 5 1774 335 213 28 0 chr3 155914132 155914240 -3685543 + (TAGA)n Simple_repeat Simple_repeat 2 112 0 5 1774 3215 156 74 24 chr3 155916214 155916929 -3682854 - RMER17A LTR ERVK 0 751 1 5 1774 21 0 0 0 chr3 155916992 155917013 -3682770 + AT_rich Low_complexity Low_complexity 1 21 0 5 1774 525 240 0 0 chr3 155917751 155918091 -3681692 + (CA)n Simple_repeat Simple_repeat 1 340 0 5 1774 24 0 0 0 chr3 155918836 155918860 -3680923 + AT_rich Low_complexity Low_complexity 1 24 0 5 1774 2545 175 54 10 chr3 155919193 155919690 -3680093 + RLTR28 LTR ERVL 1 519 -5 5 1774 382 360 96 29 chr3 155919747 155919956 -3679827 + LTR16A LTR ERVL 1 223 -228 5 1774 3086 3 0 0 chr3 155919987 155920324 -3679459 - IAPLTR1a_Mm LTR ERVK 0 337 1 5 1774 9897 15 2 0 chr3 155920324 155921479 -3678304 - IAPEz-int LTR ERVK 0 6481 5325 5 1774 31883 25 10 9 chr3 155921479 155925385 -3674398 - IAPEz-int LTR ERVK -2566 3915 8 5 1774 3086 3 0 0 chr3 155925385 155925722 -3674061 - IAPLTR1a_Mm LTR ERVK 0 337 1 5 1774 26 0 0 0 chr3 155926990 155927016 -3672767 + AT_rich Low_complexity Low_complexity 1 26 0 5 1774 229 361 0 10 chr3 155927059 155927157 -3672626 - RMER1C Other Other -1215 127 31 5 1774 434 237 0 40 chr3 155927341 155927442 -3672341 - RMER1B Other Other -356 710 614 5 1774 239 94 0 70 chr3 155928277 155928334 -3671449 + T-rich Low_complexity Low_complexity 1 53 0 5 1774 356 241 103 103 chr3 155928470 155928664 -3671119 + B3 SINE B2 1 194 -1 5 1774 405 269 188 0 chr3 155929555 155929620 -3670163 + RMER30 DNA MER1_type 5 88 -114 5 1774 195 42 0 0 chr3 155929620 155929644 -3670139 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 5 1774 405 269 188 0 chr3 155929644 155929727 -3670056 + RMER30 DNA MER1_type 89 180 -22 5 1774 282 279 93 0 chr3 155929653 155929739 -3670044 - Charlie12 DNA MER1_type -2778 95 2 5 1774 1115 250 218 57 chr3 155931328 155931782 -3668001 + MT2A LTR ERVL 5 531 -2 5 1774 1207 256 46 41 chr3 155932700 155933115 -3666668 + MTD LTR MaLR 3 419 0 5 1774 606 131 0 0 chr3 155933926 155934025 -3665758 + (TTCC)n Simple_repeat Simple_repeat 3 101 0 5 1774 543 307 125 24 chr3 155934029 155934392 -3665391 - MTD LTR MaLR -20 399 6 5 1774 325 302 114 30 chr3 155937385 155937552 -3662231 + B3A SINE B2 2 182 -16 5 1774 222 235 0 0 chr3 155938606 155938657 -3661126 + (TA)n Simple_repeat Simple_repeat 2 52 0 5 1774 220 250 0 16 chr3 155939021 155939082 -3660701 + (TA)n Simple_repeat Simple_repeat 2 61 0 5 1774 342 0 0 0 chr3 155939312 155939350 -3660433 + (TA)n Simple_repeat Simple_repeat 2 39 0 5 1774 396 0 0 0 chr3 155939966 155940010 -3659773 + (TA)n Simple_repeat Simple_repeat 2 45 0 5 1774 372 373 115 62 chr3 155940429 155941097 -3658686 - MTE-int LTR MaLR -42 1538 828 5 1774 3241 231 8 29 chr3 155941097 155941832 -3657951 + RMER6D LTR ERVK 1 720 0 5 1774 372 373 115 62 chr3 155941832 155941878 -3657905 - MTE-int LTR MaLR -753 827 786 5 1774 285 271 160 15 chr3 155943147 155943212 -3656571 - MTEb LTR MaLR -3 376 304 5 1774 255 61 0 0 chr3 155943212 155943245 -3656538 + (TTG)n Simple_repeat Simple_repeat 1 33 0 5 1774 428 273 265 9 chr3 155943245 155943466 -3656317 - MTEb LTR MaLR -76 303 1 5 1774 522 0 0 0 chr3 155944389 155944447 -3655336 + (TC)n Simple_repeat Simple_repeat 1 58 0 5 1774 225 83 0 0 chr3 155944447 155944482 -3655301 + (CA)n Simple_repeat Simple_repeat 1 36 0 5 1774 492 111 0 0 chr3 155945634 155945724 -3654059 + (TC)n Simple_repeat Simple_repeat 1 90 0 5 1774 299 85 21 0 chr3 155945724 155945771 -3654012 + (TG)n Simple_repeat Simple_repeat 1 48 0 5 1774 250 321 53 44 chr3 155946159 155946190 -3653593 - B1_Mm SINE Alu -22 125 11 5 1774 321 277 48 0 chr3 155946190 155946273 -3653510 - ID_B1 SINE B4 -46 178 92 6 1774 273 385 28 19 chr3 155946751 155946857 -3652926 + RSINE1 SINE B4 55 161 -4 6 1774 199 344 32 0 chr3 155946880 155946973 -3652810 + MIR SINE MIR 77 172 -90 6 1774 36354 14 1 7 chr3 155947713 155952919 -3646864 + L1Md_A LINE L1 416 5586 -297 6 1774 8880 12 0 0 chr3 155952919 155953915 -3645868 + L1Md_A LINE L1 5587 6582 0 6 1774 309 131 0 0 chr3 155953938 155953999 -3645784 + (A)n Simple_repeat Simple_repeat 1 61 0 6 1774 530 367 35 22 chr3 155954993 155955305 -3644478 - MLT1A0 LTR MaLR -28 337 22 6 1774 721 258 69 5 chr3 155956601 155956804 -3642979 + B3 SINE B2 1 216 0 6 1774 234 0 0 0 chr3 155956867 155956893 -3642890 + (TG)n Simple_repeat Simple_repeat 1 26 0 6 1774 252 0 0 0 chr3 155956893 155956920 -3642863 + (GA)n Simple_repeat Simple_repeat 1 28 0 6 1774 1695 50 9 14 chr3 155956969 155957191 -3642592 - L1Md_F2 LINE L1 -13 6569 6349 6 1774 210 163 0 23 chr3 155957211 155957255 -3642528 + (CAAAC)n Simple_repeat Simple_repeat 2 44 0 6 1774 6278 194 38 12 chr3 155957397 155958536 -3641247 + L1_Mur2 LINE L1 883 2049 -3828 6 1774 414 0 0 0 chr3 155958536 155958582 -3641201 + (GA)n Simple_repeat Simple_repeat 1 46 0 6 1774 6278 189 45 14 chr3 155958582 155959309 -3640474 + L1_Mur2 LINE L1 2050 2799 -3078 6 1774 6902 168 28 10 chr3 155959309 155960588 -3639195 + Lx4B LINE L1 5738 7039 -19 6 1774 978 97 0 0 chr3 155960588 155960732 -3639051 + (TAAA)n Simple_repeat Simple_repeat 2 145 0 6 1774 22 35 0 0 chr3 155960804 155960833 -3638950 + AT_rich Low_complexity Low_complexity 1 29 0 6 1774 539 66 0 13 chr3 155961108 155961185 -3638598 + (TAA)n Simple_repeat Simple_repeat 1 76 0 6 1774 1075 93 0 0 chr3 155961406 155961546 -3638237 + B1_Mus2 SINE Alu 1 140 -7 6 1774 306 0 0 0 chr3 155961548 155961582 -3638201 + (TAAA)n Simple_repeat Simple_repeat 1 34 0 6 1774 358 363 32 0 chr3 155961597 155961721 -3638062 + RSINE1 SINE B4 7 134 -31 6 1774 232 278 11 11 chr3 155962068 155962159 -3637624 + L1MC1 LINE L1 5489 5579 -2206 6 1774 229 136 30 0 chr3 155962411 155962477 -3637306 + A-rich Low_complexity Low_complexity 2 69 0 6 1774 289 348 30 25 chr3 155962607 155962843 -3636940 + L1MC1 LINE L1 6092 6328 -5 6 1774 267 103 0 0 chr3 155963986 155964025 -3635758 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 6 1774 882 253 12 7 chr3 155965262 155965441 -3634342 + B3A SINE B2 1 176 -40 6 1774 357 62 0 0 chr3 155965441 155965489 -3634294 + (CA)n Simple_repeat Simple_repeat 1 48 0 6 1774 808 269 33 61 chr3 155965489 155965523 -3634260 + B3 SINE B2 177 208 -8 6 1774 569 326 0 0 chr3 155965939 155966074 -3633709 + RSINE1 SINE B4 3 137 -28 6 1774 181 294 97 40 chr3 155966216 155966340 -3633443 - L2 LINE L2 -1603 1816 1686 6 1774 285 29 0 0 chr3 155966375 155966409 -3633374 + (TG)n Simple_repeat Simple_repeat 2 35 0 6 1774 831 261 10 10 chr3 155966539 155966748 -3633035 - B3 SINE B2 -7 209 1 6 1774 282 305 7 52 chr3 155968346 155968481 -3631302 + GA-rich Low_complexity Low_complexity 1 129 0 6 1774 573 76 0 0 chr3 155968746 155968825 -3630958 + (TG)n Simple_repeat Simple_repeat 1 79 0 6 1774 201 182 0 0 chr3 155968854 155968909 -3630874 + (CAGA)n Simple_repeat Simple_repeat 2 56 0 6 1774 564 116 0 0 chr3 155968932 155969018 -3630765 + (TG)n Simple_repeat Simple_repeat 1 86 0 6 1774 201 182 0 0 chr3 155969047 155969102 -3630681 + (CAGA)n Simple_repeat Simple_repeat 2 56 0 6 1774 495 48 0 0 chr3 155969125 155969187 -3630596 + (TG)n Simple_repeat Simple_repeat 1 62 0 6 1774 3129 56 183 2 chr3 155969187 155969619 -3630164 - RLTR1B LTR ERV1 -2 510 1 6 1774 456 19 0 0 chr3 155969725 155969778 -3630005 + (TTCC)n Simple_repeat Simple_repeat 1 53 0 6 1774 836 104 8 0 chr3 155969778 155969911 -3629872 + (TC)n Simple_repeat Simple_repeat 1 135 0 6 1774 468 352 68 37 chr3 155970750 155971074 -3628709 - MER89 LTR ERV1 0 559 226 6 1774 226 253 0 112 chr3 155971216 155971305 -3628478 + MER45B DNA Tip100 509 587 -453 6 1774 211 239 0 0 chr3 155971625 155971671 -3628112 + A-rich Low_complexity Low_complexity 1 46 0 6 1774 243 309 103 0 chr3 155971858 155971926 -3627857 + RSINE1 SINE B4 1 75 -90 6 1774 198 0 0 0 chr3 155971976 155971998 -3627785 + (CA)n Simple_repeat Simple_repeat 2 23 0 6 1774 2060 35 4 0 chr3 155972531 155972791 -3626992 - RLTR10-int LTR ERVK -1686 301 41 6 1774 2702 26 2 201 chr3 155972801 155973288 -3626495 - RLTR10 LTR ERVK 0 390 1 6 1774 15611 22 1 51 chr3 155973290 155975337 -3624446 - RLTR10-int LTR ERVK -3 1984 41 6 221 2679 28 2 201 chr3 155975347 155975834 -3623949 - RLTR10 LTR ERVK 0 390 1 6 1775 792 175 104 24 chr3 155976898 155977109 -3622674 - Lx9 LINE L1 -8 7636 7409 6 1775 3481 198 40 25 chr3 155977156 155977889 -3621894 + RMER1B Other Other 1 1066 0 6 1775 33467 45 1 4 chr3 155979391 155984636 -3615147 + L1Md_T LINE L1 265 5589 -297 6 1775 8357 36 1 0 chr3 155984637 155985630 -3614153 + L1Md_T LINE L1 5591 6584 -1 6 1775 30 0 0 0 chr3 155985685 155985715 -3614068 + AT_rich Low_complexity Low_complexity 1 30 0 6 1775 527 321 79 16 chr3 155987603 155987793 -3611990 + B3 SINE B2 8 209 -7 6 1775 230 370 50 29 chr3 155988804 155988943 -3610840 + MIRb SINE MIR 112 253 -15 6 1775 266 371 44 61 chr3 155989013 155989194 -3610589 - ID_B1 SINE B4 -11 213 36 6 1775 1631 78 0 18 chr3 155989761 155989982 -3609801 + L1_Mus1 LINE L1 6351 6567 0 6 1775 2907 68 29 3 chr3 155990150 155990536 -3609247 - MTA_Mm LTR MaLR 0 396 1 6 1775 23 0 0 0 chr3 155991761 155991784 -3607999 + AT_rich Low_complexity Low_complexity 1 23 0 6 1775 30840 93 10 2 chr3 155991958 155998258 -3601525 - L1_Mus1 LINE L1 -3 6564 229 6 1775 338 331 74 17 chr3 155998628 155998803 -3600980 - LTR50 LTR ERVL -538 257 73 6 1775 308 284 73 73 chr3 155999108 155999245 -3600538 + L1M2 LINE L1 3684 3820 -2323 6 1775 21 57 0 0 chr3 155999891 155999926 -3599857 + AT_rich Low_complexity Low_complexity 1 35 0 6 1775 255 359 0 28 chr3 156000420 156000529 -3599254 + PB1D10 SINE Alu 1 106 -11 1 1775 1115 157 32 18 chr3 156000533 156000873 -3598910 + (TAGA)n Simple_repeat Simple_repeat 1 344 0 2 1775 24 0 0 0 chr3 156001118 156001142 -3598641 + AT_rich Low_complexity Low_complexity 1 24 0 3 1775 450 49 0 0 chr3 156001226 156001287 -3598496 + (TG)n Simple_repeat Simple_repeat 1 61 0 4 1775 224 214 0 0 chr3 156002849 156002891 -3596892 + (CA)n Simple_repeat Simple_repeat 1 42 0 5 1775 555 312 0 0 chr3 156002928 156003066 -3596717 - B1_Mur1 SINE Alu 0 149 12 6 1775 348 94 0 0 chr3 156004233 156004286 -3595497 + (TATG)n Simple_repeat Simple_repeat 4 56 0 7 1775 1958 85 284 0 chr3 156004974 156005291 -3594492 - MTB_Mm LTR MaLR 0 407 1 8 1775 5008 145 201 13 chr3 156005291 156006349 -3593434 - MTB_Mm-int LTR MaLR 0 1258 2 8 1775 2926 98 2 2 chr3 156006349 156006755 -3593028 - MTB_Mm LTR MaLR 0 407 1 8 1775 192 213 0 0 chr3 156006820 156006881 -3592902 + (TG)n Simple_repeat Simple_repeat 2 62 0 9 1775 207 0 0 0 chr3 156007079 156007102 -3592681 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1 1775 435 339 8 0 chr3 156007751 156007869 -3591914 + RSINE1 SINE B4 2 120 -45 1 1775 30 45 0 0 chr3 156007899 156007943 -3591840 + AT_rich Low_complexity Low_complexity 1 44 0 1 1775 282 207 24 16 chr3 156008284 156008407 -3591376 + (TATG)n Simple_repeat Simple_repeat 3 126 0 1 1775 351 0 0 0 chr3 156008730 156008769 -3591014 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 1775 351 0 0 0 chr3 156008769 156008807 -3590976 + (TA)n Simple_repeat Simple_repeat 1 39 0 1 1775 347 353 19 39 chr3 156009270 156009426 -3590357 - B3 SINE B2 -3 213 61 1 1775 390 281 55 41 chr3 156010619 156010764 -3589019 + RMER15 LTR ERVL 275 421 -154 1 1775 234 0 0 0 chr3 156011453 156011479 -3588304 + (A)n Simple_repeat Simple_repeat 1 26 0 1 1775 21 0 0 0 chr3 156012232 156012253 -3587530 + AT_rich Low_complexity Low_complexity 1 21 0 1 1775 21 0 0 0 chr3 156012308 156012329 -3587454 + AT_rich Low_complexity Low_complexity 1 21 0 2 1775 224 237 51 0 chr3 156012434 156012493 -3587290 + (TATATG)n Simple_repeat Simple_repeat 1 62 0 2 1775 534 341 22 0 chr3 156012507 156012642 -3587141 - RSINE1 SINE B4 -22 143 6 2 1775 206 118 0 0 chr3 156013191 156013225 -3586558 + (CAAAA)n Simple_repeat Simple_repeat 3 36 0 2 1775 186 319 72 0 chr3 156014693 156014762 -3585021 + MIRc SINE MIR 131 204 -64 2 1775 21 57 0 0 chr3 156015020 156015055 -3584728 + AT_rich Low_complexity Low_complexity 1 35 0 2 1775 189 0 0 0 chr3 156015141 156015162 -3584621 + (TC)n Simple_repeat Simple_repeat 1 21 0 2 1775 840 156 23 6 chr3 156015182 156015356 -3584427 + GA-rich Low_complexity Low_complexity 3 179 0 2 1775 268 89 44 0 chr3 156015356 156015401 -3584382 + (GGGA)n Simple_repeat Simple_repeat 1 47 0 2 1775 258 192 0 0 chr3 156015401 156015453 -3584330 + GA-rich Low_complexity Low_complexity 4 55 0 2 1775 1103 234 15 97 chr3 156015459 156015790 -3583993 - Lx7 LINE L1 -216 7480 7177 3 1775 243 293 0 0 chr3 156016127 156016250 -3583533 + (TG)n Simple_repeat Simple_repeat 2 124 0 3 1775 210 105 0 0 chr3 156017393 156017431 -3582352 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 3 1775 231 192 77 0 chr3 156018209 156018261 -3581522 - L1_Rod LINE L1 -166 5681 5626 3 1775 456 19 0 0 chr3 156018687 156018740 -3581043 + (TG)n Simple_repeat Simple_repeat 2 54 0 3 1775 196 237 179 26 chr3 156019173 156019251 -3580532 + MIRm SINE MIR 41 130 -146 3 1775 31965 79 7 4 chr3 156021153 156026596 -3573187 + L1Md_F2 LINE L1 131 5586 -297 3 1775 7983 47 1 5 chr3 156026596 156027596 -3572187 + L1Md_F2 LINE L1 5587 6582 0 3 1775 183 343 129 36 chr3 156027691 156027915 -3571868 - L2a LINE L2 -229 3197 2953 3 1775 670 288 33 33 chr3 156028517 156028729 -3571054 - B3 SINE B2 -4 212 1 3 1775 22 0 0 0 chr3 156028783 156028805 -3570978 + AT_rich Low_complexity Low_complexity 1 22 0 3 1775 683 167 21 0 chr3 156030767 156030911 -3568872 - Lx2B LINE L1 -3 6997 6851 4 1775 253 260 0 107 chr3 156030911 156031023 -3568760 - Lx2B LINE L1 -105 6895 6796 4 1775 29 47 0 0 chr3 156031379 156031422 -3568361 + AT_rich Low_complexity Low_complexity 1 43 0 4 1775 486 301 87 0 chr3 156032241 156032447 -3567336 - ID_B1 SINE B4 0 224 1 4 1775 360 289 0 0 chr3 156032484 156032664 -3567119 + (TG)n Simple_repeat Simple_repeat 1 180 0 4 1775 315 0 0 0 chr3 156033503 156033538 -3566245 + (TG)n Simple_repeat Simple_repeat 2 36 0 4 1775 21 0 0 0 chr3 156036517 156036538 -3563245 + AT_rich Low_complexity Low_complexity 1 21 0 4 1775 634 302 113 47 chr3 156036786 156037175 -3562608 + MTE2a LTR MaLR 3 377 -2 4 1775 250 45 22 22 chr3 156038077 156038122 -3561661 + (TTTTTG)n Simple_repeat Simple_repeat 3 47 0 4 1775 7857 81 5 1 chr3 156038125 156039312 -3560471 - L1_Mus3 LINE L1 0 6638 5447 4 1775 449 341 55 14 chr3 156039673 156039893 -3559890 + B4A SINE B4 43 271 -21 5 1775 350 21 21 0 chr3 156040174 156040221 -3559562 + (TTTTTG)n Simple_repeat Simple_repeat 1 48 0 5 1775 520 194 7 7 chr3 156040416 156040556 -3559227 + (TA)n Simple_repeat Simple_repeat 2 141 0 5 1775 2656 77 61 0 chr3 156040558 156040936 -3558847 + BGLII_Mus LTR ERVK 1 401 -21 5 1775 3066 99 33 7 chr3 156040956 156041326 -3558457 - RLTR31B_Mm LTR ERVK -86 471 101 5 1775 372 22 0 0 chr3 156041326 156041371 -3558412 + (TC)n Simple_repeat Simple_repeat 1 45 0 5 1775 3066 99 33 7 chr3 156041371 156041459 -3558324 - RLTR31B_Mm LTR ERVK -457 100 1 5 1775 201 330 20 10 chr3 156041471 156041572 -3558211 + (CATA)n Simple_repeat Simple_repeat 4 105 0 5 1775 276 324 74 69 chr3 156042047 156042236 -3557547 + MLT1E2 LTR MaLR 40 229 -398 5 1775 518 316 74 6 chr3 156042570 156042907 -3556876 - L1MA6 LINE L1 -62 6238 5879 5 1775 189 0 0 0 chr3 156043991 156044012 -3555771 + (TG)n Simple_repeat Simple_repeat 2 22 0 5 1775 30 0 0 0 chr3 156044365 156044395 -3555388 + AT_rich Low_complexity Low_complexity 1 30 0 6 1775 961 240 9 4 chr3 156044395 156044625 -3555158 + MYSERV6-int LTR ERVK 8531 8761 -198 6 1775 721 258 204 14 chr3 156044704 156044983 -3554800 - MTC LTR MaLR -52 369 38 6 1775 769 47 0 19 chr3 156045008 156045116 -3554667 + (GGAA)n Simple_repeat Simple_repeat 3 108 0 6 1775 4624 81 36 3 chr3 156045118 156045802 -3553981 - MusHAL1 LINE L1 -726 1986 1280 6 1775 253 264 14 27 chr3 156045802 156045876 -3553907 - RLTR10D LTR ERVK 0 359 287 6 1775 274 246 15 0 chr3 156046078 156046143 -3553640 + MTEa LTR MaLR 68 133 -246 6 1775 788 48 9 0 chr3 156046196 156046301 -3553482 + (TC)n Simple_repeat Simple_repeat 1 106 0 6 1775 235 209 238 0 chr3 156046373 156046478 -3553305 - Lx9 LINE L1 0 7644 7515 6 1775 432 0 0 0 chr3 156046478 156046526 -3553257 + (TA)n Simple_repeat Simple_repeat 2 49 0 6 1775 1519 233 41 71 chr3 156046527 156046605 -3553178 - Lx9 LINE L1 -177 7467 7388 6 1775 1353 218 86 22 chr3 156046605 156046966 -3552817 + ORR1C2 LTR MaLR 1 384 0 7 1775 1519 233 41 71 chr3 156046966 156047350 -3552433 - Lx9 LINE L1 -257 7387 7019 6 1775 1725 237 56 52 chr3 156047349 156047794 -3551989 + Lx9 LINE L1 6372 6818 -826 6 1775 2235 186 144 41 chr3 156047796 156048289 -3551494 + RMER19C LTR ERVK 1 544 -67 7 1775 378 197 115 56 chr3 156048362 156048543 -3551240 + L1MA8 LINE L1 5826 6011 -280 7 1775 1449 250 63 5 chr3 156049092 156049486 -3550297 - MTD LTR MaLR 0 419 3 7 1775 729 110 0 0 chr3 156049782 156049900 -3549883 + (TG)n Simple_repeat Simple_repeat 1 118 0 7 1775 546 79 0 0 chr3 156049900 156049976 -3549807 + (GA)n Simple_repeat Simple_repeat 2 77 0 7 1775 225 0 0 0 chr3 156050111 156050136 -3549647 + (T)n Simple_repeat Simple_repeat 1 25 0 7 1775 463 207 110 23 chr3 156050685 156050858 -3548925 - Lx9 LINE L1 -3 7641 7454 7 1775 238 196 22 0 chr3 156051113 156051159 -3548624 + L1M LINE L1 5340 5386 -854 7 1775 1294 250 74 37 chr3 156052486 156052839 -3546944 - ORR1D2 LTR MaLR -4 366 1 7 1775 180 0 0 0 chr3 156054988 156055008 -3544775 + (GA)n Simple_repeat Simple_repeat 2 21 0 8 1775 1398 93 28 5 chr3 156055083 156055299 -3544484 + L1_Mus3 LINE L1 6413 6633 -5 8 1775 382 148 37 0 chr3 156055311 156055392 -3544391 + A-rich Low_complexity Low_complexity 2 85 0 8 1775 5279 100 44 0 chr3 156055394 156055887 -3543896 + L1_Mus4 LINE L1 5827 6345 -291 8 1775 297 0 0 0 chr3 156055887 156055920 -3543863 + (CA)n Simple_repeat Simple_repeat 1 33 0 8 1775 5279 100 44 0 chr3 156055920 156056197 -3543586 + L1_Mus4 LINE L1 6346 6630 -6 8 1775 252 0 0 0 chr3 156057626 156057654 -3542129 + (CA)n Simple_repeat Simple_repeat 2 29 0 8 1775 1494 120 62 0 chr3 156057660 156057902 -3541881 - RMER15 LTR ERVL -43 532 276 8 1775 587 206 63 0 chr3 156057944 156058070 -3541713 - RMER15 LTR ERVL -440 135 2 8 1775 318 320 55 23 chr3 156058207 156058335 -3541448 - MER5A DNA MER1_type -3 186 55 8 1775 504 357 22 16 chr3 156058369 156058554 -3541229 + ORR1E LTR MaLR 5 190 -169 8 1775 246 62 0 0 chr3 156058672 156058704 -3541079 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 8 1775 279 0 0 0 chr3 156058793 156058824 -3540959 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 9 1775 189 0 0 0 chr3 156059415 156059436 -3540347 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 9 1775 280 154 0 44 chr3 156059735 156059803 -3539980 + GA-rich Low_complexity Low_complexity 6 70 0 9 1775 34 79 0 0 chr3 156059845 156059921 -3539862 + AT_rich Low_complexity Low_complexity 1 76 0 9 1775 1111 95 0 12 chr3 156060030 156060190 -3539593 - L1Md_F2 LINE L1 -12 6570 6413 9 1775 1442 71 0 10 chr3 156060190 156060390 -3539393 + L1Md_F2 LINE L1 6220 6417 -165 9 1775 23 33 0 0 chr3 156060656 156060686 -3539097 + AT_rich Low_complexity Low_complexity 1 30 0 9 1775 229 178 79 40 chr3 156061521 156061597 -3538186 + BLACKJACK DNA AcHobo 2340 2418 -526 9 1775 1297 221 96 12 chr3 156061599 156061942 -3537841 + ORR1D1 LTR MaLR 1 372 -2 9 1775 189 0 0 0 chr3 156062598 156062619 -3537164 + (GA)n Simple_repeat Simple_repeat 1 21 0 9 1775 225 0 0 0 chr3 156062626 156062651 -3537132 + (TG)n Simple_repeat Simple_repeat 1 25 0 9 1775 257 75 25 0 chr3 156062651 156062691 -3537092 + (GA)n Simple_repeat Simple_repeat 2 42 0 1 1775 28 29 0 0 chr3 156065258 156065293 -3534490 + AT_rich Low_complexity Low_complexity 1 35 0 1 1775 266 87 0 21 chr3 156066398 156066445 -3533338 + (TA)n Simple_repeat Simple_repeat 2 47 0 1 1775 1263 303 73 70 chr3 156067039 156067730 -3532053 - RMER13A LTR ERVK -30 878 176 1 1775 879 193 162 101 chr3 156067796 156068154 -3531629 + Lx5 LINE L1 5969 6348 -702 1 1775 392 277 84 0 chr3 156069826 156069945 -3529838 - Tigger7 DNA MER2_type -2355 136 8 1 1775 803 122 0 8 chr3 156071880 156072012 -3527771 + (GAAA)n Simple_repeat Simple_repeat 2 132 0 1 1775 261 98 0 0 chr3 156073430 156073471 -3526312 + (CAGAGA)n Simple_repeat Simple_repeat 6 46 0 1 1775 552 15 0 0 chr3 156073547 156073612 -3526171 + (CA)n Simple_repeat Simple_repeat 2 66 0 1 1775 488 126 0 21 chr3 156073613 156073710 -3526073 + (CAGAGA)n Simple_repeat Simple_repeat 2 96 0 1 1775 21 0 0 0 chr3 156075386 156075407 -3524376 + AT_rich Low_complexity Low_complexity 1 21 0 1 1775 324 0 0 0 chr3 156075638 156075674 -3524109 + (CA)n Simple_repeat Simple_repeat 1 36 0 1 1775 381 122 0 0 chr3 156075674 156075748 -3524035 + (GA)n Simple_repeat Simple_repeat 1 74 0 1 1775 442 327 19 7 chr3 156076410 156076564 -3523219 - RSINE1 SINE B4 -7 158 3 1 1775 460 318 92 32 chr3 156076882 156077100 -3522683 + MER2 DNA MER2_type 1 231 -114 1 1775 5720 81 47 7 chr3 156077134 156077986 -3521797 + RLTR13D6 LTR ERVK 1 1023 0 1 1775 303 28 0 0 chr3 156078543 156078579 -3521204 + (TG)n Simple_repeat Simple_repeat 1 36 0 1 1775 516 122 0 0 chr3 156078579 156078661 -3521122 + (TA)n Simple_repeat Simple_repeat 1 82 0 1 1775 432 0 0 0 chr3 156078760 156078808 -3520975 + (GGAA)n Simple_repeat Simple_repeat 1 48 0 1 1775 317 125 0 43 chr3 156079340 156079432 -3520351 + (GTTTG)n Simple_repeat Simple_repeat 2 89 0 1 1775 295 284 0 105 chr3 156079716 156079803 -3519980 - ORR1E LTR MaLR -292 78 1 1 1775 183 80 0 0 chr3 156081457 156081482 -3518301 + (A)n Simple_repeat Simple_repeat 1 25 0 1 1775 182 278 17 100 chr3 156082664 156082724 -3517059 + L2 LINE L2 1266 1320 -2099 1 1775 1077 331 79 70 chr3 156082865 156083388 -3516395 - Lx8 LINE L1 -17 7456 6905 1 1775 252 0 0 0 chr3 156083388 156083416 -3516367 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 1 1775 4865 51 30 2 chr3 156083421 156084031 -3515752 + L1_Mus1 LINE L1 5940 6566 -1 1 1775 1077 331 79 70 chr3 156084031 156084090 -3515693 - Lx8 LINE L1 -573 6900 6858 1 1775 291 54 0 0 chr3 156084090 156084127 -3515656 + (TGAA)n Simple_repeat Simple_repeat 3 39 0 1 1775 1077 331 79 70 chr3 156084127 156084679 -3515104 - Lx8 LINE L1 -616 6857 6305 1 1775 203 88 29 0 chr3 156085293 156085327 -3514456 + (TCC)n Simple_repeat Simple_repeat 3 37 0 1 1775 218 143 53 18 chr3 156086582 156086639 -3513144 + (TA)n Simple_repeat Simple_repeat 1 59 0 1 1775 452 222 0 0 chr3 156087479 156087578 -3512205 + ORR1D1 LTR MaLR 3 101 -273 1 1775 2846 183 27 3 chr3 156087578 156088170 -3511613 - L1_Mm LINE L1 -443 5440 4835 1 1775 920 138 0 0 chr3 156088169 156088314 -3511469 + L1_Mm LINE L1 5430 5574 -309 1 1775 1109 202 0 85 chr3 156088310 156088581 -3511202 + Lx4B LINE L1 6609 6856 -202 1 1775 4428 204 44 19 chr3 156088581 156089702 -3510081 + MYSERV6-int LTR ERVK 2335 3483 -5476 1 1775 1526 132 26 15 chr3 156089702 156089992 -3509791 + Lx2 LINE L1 6623 6872 -125 1 1775 1065 184 0 14 chr3 156089992 156090207 -3509576 + Lx2 LINE L1 6784 6995 -2 1 1775 4062 175 34 2 chr3 156090216 156091052 -3508731 + MYSERV6-int LTR ERVK 3516 4377 -4582 1 1775 1346 277 64 82 chr3 156091035 156091852 -3507931 + MYSERV6-int LTR ERVK 4234 5035 -1515 1 1775 363 329 34 61 chr3 156091897 156092102 -3507681 + RMER4A LTR ERVK 240 557 -28 1 1775 403 160 45 27 chr3 156092103 156092243 -3507540 + MYSERV6-int LTR ERVK 7818 7901 -1058 1 1775 325 209 35 0 chr3 156092247 156092333 -3507450 - L1M2 LINE L1 -1535 4608 4520 1 1775 467 255 69 49 chr3 156092577 156092824 -3506959 + L1M2 LINE L1 3699 3950 -2193 1 1775 254 278 36 16 chr3 156093044 156093170 -3506613 + L1M2 LINE L1 4166 4296 -1850 1 1775 938 107 107 0 chr3 156093919 156094078 -3505705 + L1_Mus3 LINE L1 6459 6634 -4 1 1775 947 303 106 13 chr3 156095531 156095993 -3503790 + Lx9 LINE L1 6289 6793 -851 1 1775 416 279 0 0 chr3 156096090 156096269 -3503514 + (TGAG)n Simple_repeat Simple_repeat 1 179 0 1 1775 223 343 0 0 chr3 156096327 156096493 -3503290 + GA-rich Low_complexity Low_complexity 3 168 0 1 1775 225 359 0 0 chr3 156096872 156097042 -3502741 + GA-rich Low_complexity Low_complexity 3 172 0 1 1775 999 163 113 10 chr3 156098352 156098556 -3501227 + URR1B DNA MER1_type 1 225 0 1 1775 229 299 13 0 chr3 156098661 156098738 -3501045 + (CA)n Simple_repeat Simple_repeat 2 79 0 1 1775 7002 53 1 0 chr3 156099391 156100462 -3499321 + L1Md_F2 LINE L1 5414 6486 -96 1 1775 275 228 0 0 chr3 156100708 156100765 -3499018 - B1F1 SINE Alu -5 144 88 1 1775 206 289 0 0 chr3 156100900 156100976 -3498807 + T-rich Low_complexity Low_complexity 1 76 0 1 221 39482 5 0 0 chr3 156101021 156107378 -3492405 - L1Md_A LINE L1 0 6582 225 1 1776 698 43 0 0 chr3 156107379 156107472 -3492311 - L1_Mus1 LINE L1 -10 6557 6465 1 1776 717 203 0 17 chr3 156108011 156108191 -3491592 + GA-rich Low_complexity Low_complexity 3 179 0 1 1776 210 329 139 19 chr3 156108515 156108673 -3491110 + MER5A DNA MER1_type 13 189 0 1 1776 218 356 16 71 chr3 156109582 156109709 -3490074 + MIRb SINE MIR 33 152 -116 1 1776 229 343 91 63 chr3 156110120 156110341 -3489442 + MIRb SINE MIR 37 263 -5 1 1776 588 177 46 47 chr3 156111439 156111597 -3488186 + MTD LTR MaLR 240 401 -18 1 1776 201 129 0 0 chr3 156111965 156111996 -3487787 + (TAG)n Simple_repeat Simple_repeat 2 32 0 1 1776 364 276 147 15 chr3 156114346 156114482 -3485301 + MTD LTR MaLR 15 168 -251 1 1776 1460 201 118 3 chr3 156114941 156115280 -3484503 - ORR1C1 LTR MaLR 0 378 1 1 1776 538 270 107 46 chr3 156116203 156116483 -3483300 - Lx8 LINE L1 -275 7198 6902 1 1776 342 0 0 0 chr3 156116877 156116915 -3482868 + (TC)n Simple_repeat Simple_repeat 1 38 0 1 1776 618 14 0 0 chr3 156116915 156116986 -3482797 + (TG)n Simple_repeat Simple_repeat 1 71 0 1 1776 233 347 67 8 chr3 156118418 156118537 -3481246 + L2 LINE L2 1473 1598 -1821 1 1776 698 312 125 36 chr3 156118775 156119104 -3480679 + MTE2b LTR MaLR 11 368 -11 1 1776 192 343 0 0 chr3 156119537 156119604 -3480179 - MIRc SINE MIR -114 154 88 1 1776 546 143 0 0 chr3 156120329 156120420 -3479363 + (TA)n Simple_repeat Simple_repeat 1 91 0 1 1776 189 0 0 0 chr3 156120420 156120441 -3479342 + (TG)n Simple_repeat Simple_repeat 2 22 0 1 1776 361 171 7 0 chr3 156120441 156120509 -3479274 + ORR1D1 LTR MaLR 299 374 0 1 1776 369 0 0 0 chr3 156120581 156120622 -3479161 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 1776 486 0 0 0 chr3 156120622 156120675 -3479108 + (TA)n Simple_repeat Simple_repeat 2 55 0 1 1776 1594 214 22 16 chr3 156121173 156121543 -3478240 + ORR1D1 LTR MaLR 3 374 0 1 1776 1166 82 0 0 chr3 156121572 156121719 -3478064 + B1_Mus2 SINE Alu 1 147 0 1 1776 207 125 0 0 chr3 156123273 156123313 -3476470 + (T)n Simple_repeat Simple_repeat 1 40 0 1 1776 198 0 0 0 chr3 156123412 156123434 -3476349 + (TC)n Simple_repeat Simple_repeat 2 23 0 1 1776 378 0 0 0 chr3 156123434 156123475 -3476308 + (TA)n Simple_repeat Simple_repeat 1 42 0 1 1776 494 16 16 0 chr3 156125205 156125268 -3474515 + (GA)n Simple_repeat Simple_repeat 2 65 0 1 1776 264 319 113 80 chr3 156125659 156125781 -3474002 + Tigger7 DNA MER2_type 125 241 -2250 1 1776 2840 21 0 0 chr3 156125781 156126108 -3473675 - L1Md_A LINE L1 -1 6581 6255 1 1776 298 311 34 63 chr3 156126108 156126285 -3473498 + Tigger7 DNA MER2_type 242 434 -2057 1 1776 542 234 27 41 chr3 156126281 156126428 -3473355 + ID_B1 SINE B4 80 224 0 1 1776 261 349 47 35 chr3 156126433 156126605 -3473178 + Tigger7 DNA MER2_type 420 593 -1898 1 1776 394 0 76 0 chr3 156127227 156127293 -3472490 + (TTTA)n Simple_repeat Simple_repeat 3 73 0 1 1776 305 314 0 31 chr3 156127298 156127459 -3472324 - L1MA4 LINE L1 -373 5927 5772 1 1776 561 236 140 23 chr3 156129375 156129639 -3470144 + Lx9 LINE L1 7340 7634 -10 1 1776 727 276 42 42 chr3 156130312 156130524 -3469259 - B3 SINE B2 -1 215 4 1 1776 625 274 55 72 chr3 156130945 156131126 -3468657 + B3A SINE B2 9 186 -9 1 1776 319 245 135 11 chr3 156134031 156134274 -3465509 - L1M3 LINE L1 -940 5203 4914 1 1776 396 0 0 0 chr3 156134305 156134349 -3465434 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 1776 551 256 94 39 chr3 156134371 156134752 -3465031 + L1MB1 LINE L1 5460 5932 -236 1 1776 421 342 54 54 chr3 156134822 156134850 -3464933 + ORR1E LTR MaLR 1 28 -331 1 1776 946 113 136 6 chr3 156134850 156135019 -3464764 + B2_Mm1t SINE B2 1 191 -2 1 1776 421 342 54 54 chr3 156135019 156135231 -3464552 + ORR1E LTR MaLR 29 241 -118 1 1776 232 156 56 0 chr3 156136543 156136633 -3463150 + (TAGA)n Simple_repeat Simple_repeat 4 98 0 1 1776 354 181 76 29 chr3 156136712 156136883 -3462900 + (TAGA)n Simple_repeat Simple_repeat 1 179 0 1 1776 4570 50 0 2 chr3 156137517 156138079 -3461704 - L1Md_F2 LINE L1 -12 6570 6010 1 1776 519 17 0 0 chr3 156139292 156139352 -3460431 + (TG)n Simple_repeat Simple_repeat 1 60 0 1 1776 639 0 0 0 chr3 156139802 156139873 -3459910 + (TC)n Simple_repeat Simple_repeat 1 71 0 1 1776 1172 100 2 8 chr3 156139878 156140276 -3459507 + (TG)n Simple_repeat Simple_repeat 1 395 0 1 1776 3158 183 50 13 chr3 156140282 156140901 -3458882 - RLTR26 LTR ERVK 0 642 1 1 1776 504 300 78 20 chr3 156140901 156141052 -3458731 - B3A SINE B2 -34 164 5 1 1776 238 308 121 11 chr3 156141184 156141358 -3458425 - Kanga1d DNA Tc2 -87 522 330 1 1776 3194 242 39 51 chr3 156141379 156142045 -3457738 - RMER1C Other Other -11 1331 670 1 1776 180 0 0 0 chr3 156142045 156142065 -3457718 + (CCAA)n Simple_repeat Simple_repeat 2 21 0 1 1776 3194 247 34 48 chr3 156142065 156142415 -3457368 - RMER1C Other Other -673 669 228 1 1776 236 210 16 16 chr3 156142699 156142762 -3457021 - RMER1C Other Other -1037 305 243 2 1776 2383 111 0 22 chr3 156142771 156143117 -3456666 + MERVK26-int LTR ERVK 6568 6907 -12 2 1776 597 28 0 0 chr3 156143117 156143188 -3456595 + (GA)n Simple_repeat Simple_repeat 2 72 0 2 1776 2383 111 0 22 chr3 156143188 156143199 -3456584 + MERVK26-int LTR ERVK 6908 6917 -2 2 1776 2873 194 71 13 chr3 156143202 156143807 -3455976 + RLTR26 LTR ERVK 1 640 -2 2 1776 959 245 29 29 chr3 156143811 156144055 -3455728 - RMER1C Other Other -1098 244 1 2 1776 279 202 247 0 chr3 156144146 156144235 -3455548 - RMER1B Other Other -359 707 597 2 1776 3277 73 2 0 chr3 156144666 156145118 -3454665 - L1Md_F2 LINE L1 -742 5141 4689 2 1776 3428 40 7 13 chr3 156145117 156145575 -3454208 + L1Md_F2 LINE L1 5132 5586 -297 2 1776 7508 66 8 6 chr3 156145576 156146557 -3453226 + L1Md_F2 LINE L1 5588 6570 -12 2 1776 22 35 0 0 chr3 156146645 156146674 -3453109 + AT_rich Low_complexity Low_complexity 1 29 0 2 1776 541 259 53 47 chr3 156146911 156147081 -3452702 + MTEa LTR MaLR 1 171 -208 2 1776 350 313 205 20 chr3 156147139 156147436 -3452347 + MTE-int LTR MaLR 659 1010 -570 2 1776 283 210 193 24 chr3 156147458 156147541 -3452242 + PB1D9 SINE Alu 24 120 0 2 1776 25 75 0 0 chr3 156147787 156147840 -3451943 + AT_rich Low_complexity Low_complexity 1 53 0 2 1776 32 95 0 0 chr3 156148151 156148246 -3451537 + AT_rich Low_complexity Low_complexity 1 95 0 2 1776 32 43 0 0 chr3 156148812 156148858 -3450925 + AT_rich Low_complexity Low_complexity 1 46 0 2 1776 330 157 0 0 chr3 156149068 156149151 -3450632 + CT-rich Low_complexity Low_complexity 2 84 0 2 1776 296 336 106 34 chr3 156150925 156151090 -3448693 - ERVL-E-int LTR ERVL -2048 3619 3444 2 1776 279 0 0 0 chr3 156151090 156151121 -3448662 + (TG)n Simple_repeat Simple_repeat 1 31 0 2 1776 296 336 106 34 chr3 156151121 156151248 -3448535 - ERVL-E-int LTR ERVL -2224 3443 3306 2 1776 20645 68 14 31 chr3 156151972 156152375 -3447408 + L1Md_F2 LINE L1 2561 2963 -2920 2 1776 3429 43 38 0 chr3 156152375 156152796 -3446987 - L1Md_T LINE L1 0 6582 6146 2 1776 20645 68 14 31 chr3 156152796 156154107 -3445676 + L1Md_F2 LINE L1 2964 4196 -1687 2 1776 477 0 0 0 chr3 156154107 156154160 -3445623 + (TA)n Simple_repeat Simple_repeat 2 54 0 2 1776 20645 68 14 31 chr3 156154160 156155522 -3444261 + L1Md_F2 LINE L1 4197 5585 -298 2 1776 7504 60 32 2 chr3 156155523 156156489 -3443294 + L1Md_F2 LINE L1 5588 6582 0 2 1776 200 216 29 76 chr3 156157045 156157150 -3442633 + T-rich Low_complexity Low_complexity 3 102 0 2 1776 778 90 22 8 chr3 156158458 156158592 -3441191 + L1_Mus3 LINE L1 6495 6630 -8 2 1776 245 151 19 0 chr3 156159000 156159053 -3440730 + CT-rich Low_complexity Low_complexity 3 56 0 2 1776 342 267 128 5 chr3 156159156 156159359 -3440424 + L1MA4 LINE L1 5664 5891 -409 2 1776 1197 241 124 17 chr3 156159747 156160093 -3439690 - MTD LTR MaLR -36 383 1 2 1776 402 309 20 7 chr3 156161041 156161194 -3438589 + CT-rich Low_complexity Low_complexity 1 155 0 2 1776 191 244 40 104 chr3 156162618 156162754 -3437029 - MIR SINE MIR -59 203 75 2 1776 282 180 0 0 chr3 156162954 156163015 -3436768 + (TG)n Simple_repeat Simple_repeat 2 62 0 2 1776 2973 29 3 0 chr3 156164218 156164568 -3435215 - L1Md_T LINE L1 -2 6580 6230 2 1776 22 35 0 0 chr3 156165447 156165476 -3434307 + AT_rich Low_complexity Low_complexity 1 29 0 2 1776 269 300 62 21 chr3 156166103 156166208 -3433575 - B1F2 SINE Alu -49 100 1 2 1776 2431 198 56 65 chr3 156167599 156168275 -3431508 + L1_Mur3 LINE L1 4545 5214 -666 2 1776 388 192 19 0 chr3 156168583 156168687 -3431096 + (TA)n Simple_repeat Simple_repeat 1 106 0 2 1776 279 0 0 0 chr3 156168687 156168718 -3431065 + (TG)n Simple_repeat Simple_repeat 2 32 0 2 1776 410 309 16 16 chr3 156169750 156169875 -3429908 + B4 SINE B4 1 125 -167 2 1776 21 36 0 0 chr3 156170940 156170968 -3428815 + AT_rich Low_complexity Low_complexity 1 28 0 2 1776 25 31 0 0 chr3 156172719 156172751 -3427032 + AT_rich Low_complexity Low_complexity 1 32 0 2 1776 721 325 31 12 chr3 156172773 156173097 -3426686 - Lx8 LINE L1 -185 7288 6959 2 1776 8561 145 19 4 chr3 156173360 156175601 -3424182 - Lx LINE L1 -6 6648 4371 2 1776 205 325 104 72 chr3 156176319 156176527 -3423256 - L2a LINE L2 -246 3180 2966 2 1776 882 92 9 0 chr3 156176896 156177027 -3422756 + B1_Mus2 SINE Alu 5 135 -12 2 1776 362 69 17 0 chr3 156177028 156177086 -3422697 + (CAAA)n Simple_repeat Simple_repeat 2 60 0 2 1776 22 94 0 0 chr3 156177300 156177364 -3422419 + AT_rich Low_complexity Low_complexity 1 64 0 2 1776 235 214 53 9 chr3 156177625 156177738 -3422045 + (TA)n Simple_repeat Simple_repeat 2 119 0 2 1776 448 255 116 29 chr3 156177966 156178297 -3421486 - L1_Mur3 LINE L1 -15 5832 5532 2 1776 626 193 11 11 chr3 156178506 156178684 -3421099 + (TA)n Simple_repeat Simple_repeat 2 179 0 2 1776 223 195 57 51 chr3 156178697 156178854 -3420929 + (CATA)n Simple_repeat Simple_repeat 2 159 0 2 1776 315 217 58 0 chr3 156179985 156180054 -3419729 - MTC LTR MaLR -17 404 332 2 1776 376 29 56 14 chr3 156180798 156180869 -3418914 + (TTG)n Simple_repeat Simple_repeat 2 75 0 2 1776 210 245 0 0 chr3 156180879 156180928 -3418855 + (TTTG)n Simple_repeat Simple_repeat 2 50 0 2 1776 1490 223 84 14 chr3 156181088 156181456 -3418327 - MTD LTR MaLR -7 412 19 2 1776 267 31 0 0 chr3 156181910 156181942 -3417841 + (TA)n Simple_repeat Simple_repeat 2 33 0 2 1776 3035 146 107 20 chr3 156183038 156183673 -3416110 + RMER6C LTR ERVK 1 690 0 2 1776 378 329 0 23 chr3 156183950 156184124 -3415659 + L1MEc LINE L1 642 811 -5589 2 1776 23 54 0 0 chr3 156184209 156184246 -3415537 + AT_rich Low_complexity Low_complexity 1 37 0 2 1776 2951 71 0 17 chr3 156185144 156185546 -3414237 - MTA_Mm LTR MaLR 0 396 2 2 1776 337 363 74 51 chr3 156186182 156186502 -3413281 + MLT1A1 LTR MaLR 28 392 -16 2 1776 24 0 0 0 chr3 156187194 156187218 -3412565 + AT_rich Low_complexity Low_complexity 1 24 0 2 1776 950 303 167 25 chr3 156187471 156188076 -3411707 + Lx8 LINE L1 6765 7455 -18 2 1776 437 328 28 44 chr3 156188213 156188395 -3411388 + MT2A LTR ERVL 254 432 -101 2 1776 357 355 11 11 chr3 156189069 156189243 -3410540 + GA-rich Low_complexity Low_complexity 1 174 0 2 1776 23 54 0 0 chr3 156190256 156190293 -3409490 + AT_rich Low_complexity Low_complexity 1 37 0 2 1776 9787 196 58 32 chr3 156190535 156193086 -3406697 + Lx7 LINE L1 363 2993 -2887 2 1776 483 18 0 0 chr3 156193086 156193142 -3406641 + (GA)n Simple_repeat Simple_repeat 1 56 0 2 1776 9787 180 62 36 chr3 156193142 156193915 -3405868 + Lx7 LINE L1 2994 3770 -2110 2 1776 2986 199 170 32 chr3 156193912 156194894 -3404889 + Lx7 LINE L1 4744 5910 -1786 2 1776 247 182 109 0 chr3 156194958 156195013 -3404770 + ORR1A1-int LTR MaLR 980 1040 -752 2 1776 2475 160 132 26 chr3 156194980 156195550 -3404233 + MTC-int LTR MaLR 625 1254 -4 2 1776 1868 192 62 10 chr3 156195554 156195954 -3403829 + MTC LTR MaLR 1 421 0 2 1776 246 271 180 33 chr3 156196363 156196377 -3403406 + B1F SINE Alu 10 144 0 2 1776 263 284 155 10 chr3 156196377 156196480 -3403303 + ID_B1 SINE B4 104 221 -3 2 1776 243 0 0 0 chr3 156197222 156197249 -3402534 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2 1776 467 336 15 0 chr3 156198506 156198643 -3401140 + B4 SINE B4 10 148 -144 2 1776 390 42 0 0 chr3 156198753 156198801 -3400982 + (CA)n Simple_repeat Simple_repeat 2 49 0 2 1776 1940 186 93 7 chr3 156198812 156199231 -3400552 - RMER19B LTR ERVK -16 886 221 2 1776 1378 170 32 155 chr3 156199220 156199562 -3400221 - RMER19B LTR ERVK -602 300 1 2 1776 1660 171 91 26 chr3 156199562 156199856 -3399927 - ORR1B1 LTR MaLR -78 316 1 2 1776 387 114 75 4 chr3 156199964 156200040 -3399743 - RMER19B LTR ERVK -658 79 1 2 1776 2055 192 47 5 chr3 156200179 156200608 -3399175 - Lx2A1 LINE L1 -3 7005 6559 2 1776 450 94 0 0 chr3 156200619 156200683 -3399100 + (TG)n Simple_repeat Simple_repeat 2 65 0 2 1776 231 36 0 0 chr3 156202815 156202843 -3396940 + (CA)n Simple_repeat Simple_repeat 1 28 0 2 1776 243 0 0 0 chr3 156202844 156202871 -3396912 + (TG)n Simple_repeat Simple_repeat 2 28 0 2 1776 243 0 0 0 chr3 156202871 156202897 -3396886 + (TA)n Simple_repeat Simple_repeat 2 28 0 2 1776 584 303 33 17 chr3 156202928 156203109 -3396674 - B3A SINE B2 -1 197 14 2 1776 1242 198 80 0 chr3 156203316 156203579 -3396204 - ORR1D1 LTR MaLR -90 284 1 2 1776 387 268 122 16 chr3 156204282 156204536 -3395247 - L1MC LINE L1 -1686 4460 4180 2 1776 885 302 47 7 chr3 156204957 156205257 -3394526 - ORR1D2 LTR MaLR -58 312 1 2 1776 1783 164 3 24 chr3 156205428 156205760 -3394023 - L1_Mur2 LINE L1 -616 5261 4937 2 1776 681 140 9 9 chr3 156205760 156205875 -3393908 + L1_Mm LINE L1 4845 4959 -924 2 1776 1582 154 18 6 chr3 156205872 156206207 -3393576 + Lx2A LINE L1 6715 7007 -1 2 1776 4651 152 19 1 chr3 156206227 156207039 -3392744 - L1_Mm LINE L1 -949 4934 4109 2 1776 1741 130 94 0 chr3 156207039 156207346 -3392437 + Lx LINE L1 6312 6647 -7 2 1776 2979 100 5 2 chr3 156207967 156208400 -3391383 - L1Md_F2 LINE L1 -320 5971 5500 2 1776 4546 71 38 3 chr3 156208400 156209007 -3390776 + L1Md_F2 LINE L1 5932 6559 -23 2 1776 308 24 24 0 chr3 156209007 156209048 -3390735 + (TAA)n Simple_repeat Simple_repeat 1 42 0 2 1776 442 0 35 0 chr3 156209276 156209334 -3390449 + (TTTTG)n Simple_repeat Simple_repeat 2 61 0 2 1776 816 303 138 39 chr3 156210187 156210651 -3389132 - MLT2B3 LTR ERVL -20 534 25 2 1776 21 36 0 0 chr3 156211749 156211777 -3388006 + AT_rich Low_complexity Low_complexity 1 28 0 2 1776 600 242 56 13 chr3 156211894 156212077 -3387706 - B3 SINE B2 -9 186 1 2 1776 1700 201 34 44 chr3 156212825 156213211 -3386572 - RLTR14 LTR ERV1 0 382 1 2 1776 399 41 0 0 chr3 156214508 156214557 -3385226 + (CA)n Simple_repeat Simple_repeat 1 49 0 2 1776 280 263 25 58 chr3 156214577 156214698 -3385085 + L1M3 LINE L1 2210 2326 -3814 2 1776 378 0 0 0 chr3 156214990 156215032 -3384751 + (CAAAA)n Simple_repeat Simple_repeat 2 43 0 2 1776 432 0 0 0 chr3 156215134 156215182 -3384601 + (TG)n Simple_repeat Simple_repeat 1 48 0 2 1776 524 279 39 8 chr3 156215959 156216089 -3383694 + RSINE1 SINE B4 3 136 -29 2 1776 269 350 47 47 chr3 156216225 156216239 -3383544 + B1F SINE Alu 3 131 -18 2 1776 499 259 9 26 chr3 156216239 156216354 -3383429 + ID_B1 SINE B4 94 206 -18 2 1776 211 343 0 0 chr3 156218193 156218260 -3381523 + (ATG)n Simple_repeat Simple_repeat 2 68 0 3 1776 443 259 39 66 chr3 156218265 156218366 -3381417 - L1M3 LINE L1 -772 5368 5274 3 1776 3086 58 5 8 chr3 156218366 156218763 -3381020 - MTA_Mm LTR MaLR 0 396 1 3 1776 443 259 39 66 chr3 156218763 156218843 -3380940 - L1M3 LINE L1 -867 5273 5192 3 1776 24 0 0 0 chr3 156223065 156223089 -3376694 + AT_rich Low_complexity Low_complexity 1 24 0 3 1776 368 55 0 18 chr3 156223226 156223282 -3376501 + (TAAA)n Simple_repeat Simple_repeat 2 56 0 3 1776 980 88 20 0 chr3 156224204 156224351 -3375432 + (GGAGA)n Simple_repeat Simple_repeat 2 151 0 3 1776 23 68 0 0 chr3 156224744 156224788 -3374995 + GC_rich Low_complexity Low_complexity 1 44 0 3 1776 714 167 57 21 chr3 156228798 156228939 -3370844 - B1_Mur3 SINE Alu -2 147 2 3 1776 218 105 0 26 chr3 156229098 156229137 -3370646 + (GGAA)n Simple_repeat Simple_repeat 3 40 0 3 1776 1347 244 45 23 chr3 156229711 156230063 -3369720 + MTD LTR MaLR 25 384 -35 3 1776 226 191 28 84 chr3 156230151 156230294 -3369489 + (ATGTG)n Simple_repeat Simple_repeat 1 135 0 3 1776 21 36 0 0 chr3 156230401 156230429 -3369354 + AT_rich Low_complexity Low_complexity 1 28 0 3 1776 22 35 0 0 chr3 156230508 156230537 -3369246 + AT_rich Low_complexity Low_complexity 1 29 0 3 1776 22 56 0 0 chr3 156230554 156230590 -3369193 + AT_rich Low_complexity Low_complexity 1 36 0 3 1776 304 321 50 43 chr3 156230703 156231026 -3368757 + LTR33A_ LTR ERVL 141 516 -15 3 1776 250 254 18 0 chr3 156231110 156231165 -3368618 - ID SINE ID -142 82 27 3 1776 266 189 38 0 chr3 156231118 156231171 -3368612 - ID4_ SINE ID -10 73 19 3 1776 513 92 0 0 chr3 156231228 156231304 -3368479 + (TG)n Simple_repeat Simple_repeat 2 77 0 3 1776 2292 255 96 24 chr3 156232183 156232678 -3367105 - Lx7 LINE L1 -397 7299 6768 3 1776 267 31 0 0 chr3 156232678 156232710 -3367073 + (TTCA)n Simple_repeat Simple_repeat 1 32 0 3 1776 2292 255 96 24 chr3 156232710 156232999 -3366784 - Lx7 LINE L1 -929 6767 6460 3 1776 4742 206 42 25 chr3 156233248 156233892 -3365891 + Lx7 LINE L1 4643 5328 -552 3 1776 402 21 0 0 chr3 156233892 156233939 -3365844 + (GA)n Simple_repeat Simple_repeat 2 48 0 3 1776 4742 206 42 25 chr3 156233939 156234415 -3365368 + Lx7 LINE L1 5329 5792 -88 3 1776 1327 94 15 25 chr3 156234415 156234612 -3365171 + B2_Mm2 SINE B2 1 195 0 3 1776 4742 209 32 31 chr3 156234612 156234733 -3365050 + Lx7 LINE L1 5793 5909 -1787 3 1776 1293 325 87 26 chr3 156234787 156235676 -3364107 - Lx8 LINE L1 -39 7434 6492 3 1776 286 22 22 22 chr3 156236041 156236071 -3363712 + (CA)n Simple_repeat Simple_repeat 1 30 0 3 1776 486 0 0 0 chr3 156236071 156236125 -3363658 + (CCA)n Simple_repeat Simple_repeat 3 56 0 3 1776 286 22 22 22 chr3 156236125 156236140 -3363643 + (CA)n Simple_repeat Simple_repeat 1 15 0 3 1776 24 32 0 0 chr3 156236170 156236201 -3363582 + AT_rich Low_complexity Low_complexity 1 31 0 3 1776 414 0 0 0 chr3 156236833 156236879 -3362904 + (TG)n Simple_repeat Simple_repeat 2 47 0 3 1777 1337 199 46 17 chr3 156238524 156238856 -3360927 - Lx3C LINE L1 -3 6973 6656 3 1777 1106 80 0 0 chr3 156238918 156239056 -3360727 + B1_Mus1 SINE Alu 2 139 -9 3 1777 198 0 0 0 chr3 156239056 156239078 -3360705 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 3 1777 340 243 60 108 chr3 156239349 156239365 -3360418 - B2_Mm2 SINE B2 -9 186 174 3 1777 218 32 32 0 chr3 156239365 156239396 -3360387 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 3 1777 569 218 128 13 chr3 156239396 156239545 -3360238 - B3 SINE B2 -22 194 29 3 1777 783 0 0 0 chr3 156240296 156240383 -3359400 + (TTC)n Simple_repeat Simple_repeat 1 87 0 3 1777 450 0 0 0 chr3 156240482 156240532 -3359251 + (TCTA)n Simple_repeat Simple_repeat 4 53 0 3 1777 2276 146 44 80 chr3 156241436 156241914 -3357869 - RMER6B LTR ERVK 0 461 1 3 1777 186 324 95 20 chr3 156241991 156242139 -3357644 + MIR SINE MIR 102 260 -2 3 1777 425 319 29 0 chr3 156242250 156242388 -3357395 + Tigger7 DNA MER2_type 1 142 -2349 3 1777 4404 59 17 14 chr3 156242466 156243046 -3356737 - L1Md_F2 LINE L1 -11 6571 5990 3 1777 1576 59 23 0 chr3 156243046 156243267 -3356516 + L1Md_F2 LINE L1 5759 5984 -598 3 1777 344 315 22 0 chr3 156243742 156243831 -3355952 - PB1D10 SINE Alu -26 91 1 3 1777 882 165 0 0 chr3 156243859 156244029 -3355754 + (TA)n Simple_repeat Simple_repeat 2 171 0 3 1777 504 322 16 32 chr3 156245245 156245431 -3354352 - B3A SINE B2 -15 183 1 3 1777 27 29 0 0 chr3 156246252 156246286 -3353497 + AT_rich Low_complexity Low_complexity 1 34 0 3 1777 255 252 0 0 chr3 156246507 156246618 -3353165 + (TG)n Simple_repeat Simple_repeat 2 112 0 3 1777 466 219 0 19 chr3 156246664 156246822 -3352961 + (TATG)n Simple_repeat Simple_repeat 3 157 0 3 1777 493 213 11 0 chr3 156246836 156247010 -3352773 + (TG)n Simple_repeat Simple_repeat 1 176 0 3 1777 244 248 151 9 chr3 156247255 156247361 -3352422 - L1M3 LINE L1 -328 5861 5741 3 1777 366 143 0 0 chr3 156247953 156248016 -3351767 + (CA)n Simple_repeat Simple_repeat 1 63 0 3 1777 271 237 54 92 chr3 156248827 156248957 -3350826 + PB1D7 SINE Alu 14 138 -11 3 1777 24 53 0 0 chr3 156249556 156249594 -3350189 + AT_rich Low_complexity Low_complexity 1 38 0 3 1777 24 32 0 0 chr3 156250553 156250584 -3349199 + AT_rich Low_complexity Low_complexity 1 31 0 3 1777 434 281 17 17 chr3 156250909 156251025 -3348758 + ID_B1 SINE B4 106 221 -3 3 1777 401 54 18 0 chr3 156251038 156251094 -3348689 + (CAGG)n Simple_repeat Simple_repeat 2 58 0 3 1777 261 83 0 0 chr3 156251378 156251414 -3348369 + (T)n Simple_repeat Simple_repeat 1 36 0 3 1777 402 284 94 7 chr3 156252269 156252418 -3347365 + RSINE1 SINE B4 4 165 0 3 1777 359 222 22 0 chr3 156252543 156252633 -3347150 + L1_Mus3 LINE L1 6539 6630 -8 3 1777 683 279 196 21 chr3 156254587 156254924 -3344859 - MTB_Mm LTR MaLR 0 407 12 3 1777 23 0 0 0 chr3 156256300 156256323 -3343460 + AT_rich Low_complexity Low_complexity 1 23 0 3 1777 369 0 0 0 chr3 156258157 156258198 -3341585 + (TA)n Simple_repeat Simple_repeat 1 41 0 3 1777 269 294 146 45 chr3 156259261 156259305 -3340478 - MLT2C1 LTR ERVL 0 397 351 3 1777 396 0 0 0 chr3 156259305 156259349 -3340434 + (CA)n Simple_repeat Simple_repeat 2 45 0 3 1777 269 294 146 45 chr3 156259349 156259550 -3340233 - MLT2C1 LTR ERVL -47 350 127 3 1777 741 202 32 165 chr3 156259970 156260285 -3339498 - Lx9 LINE L1 -240 7404 7132 3 1777 330 229 22 39 chr3 156260314 156260545 -3339238 + (TA)n Simple_repeat Simple_repeat 1 227 0 3 1777 26 74 0 0 chr3 156260545 156260599 -3339184 + AT_rich Low_complexity Low_complexity 1 54 0 3 1777 375 23 0 0 chr3 156260642 156260686 -3339097 + (CA)n Simple_repeat Simple_repeat 2 45 0 3 1777 507 161 8 8 chr3 156260695 156260814 -3338969 + Lx9 LINE L1 7523 7641 -3 3 1777 257 246 118 76 chr3 156261437 156261556 -3338227 - RLTR20B3 LTR ERVK -22 541 418 3 1777 562 249 135 69 chr3 156261566 156261826 -3337957 - RLTR16 LTR ERVK -243 262 24 3 1777 242 180 16 0 chr3 156264052 156264113 -3335670 + (TCTA)n Simple_repeat Simple_repeat 3 64 0 3 1777 3401 35 2 0 chr3 156265756 156266150 -3333633 + MTA_Mm LTR MaLR 2 396 0 3 1777 376 249 74 57 chr3 156266150 156266318 -3333465 + Lx7 LINE L1 5698 5868 -1828 3 1777 1911 329 51 32 chr3 156266634 156267603 -3332180 + Lx8 LINE L1 6174 7160 -313 3 1777 236 215 82 40 chr3 156268381 156268459 -3331324 - MIRb SINE MIR -52 216 128 3 1777 21 57 0 0 chr3 156268702 156268737 -3331046 + AT_rich Low_complexity Low_complexity 1 35 0 3 1777 311 315 10 13 chr3 156268803 156268911 -3330872 - PB1D7 SINE Alu 0 120 13 3 1777 210 37 0 0 chr3 156270636 156270663 -3329120 + (CCA)n Simple_repeat Simple_repeat 3 29 0 3 1777 371 350 54 0 chr3 156270681 156270884 -3328899 - Lx9 LINE L1 -206 7438 7225 3 1777 660 314 10 0 chr3 156272379 156272586 -3327197 + B3 SINE B2 1 209 -7 3 1777 697 287 29 15 chr3 156274453 156274658 -3325125 - B3 SINE B2 -8 208 1 3 1777 2776 108 7 2 chr3 156275259 156275666 -3324117 + L1_Mus3 LINE L1 6223 6631 -7 3 1777 549 288 46 34 chr3 156275994 156276231 -3323552 - Lx8 LINE L1 -9 7464 7225 3 1777 536 27 27 0 chr3 156276312 156276385 -3323398 + (TCTA)n Simple_repeat Simple_repeat 2 76 0 3 1777 357 269 115 0 chr3 156276454 156276558 -3323225 - Lx8 LINE L1 -321 7152 7037 3 1777 623 32 43 0 chr3 156276570 156276664 -3323119 + (TC)n Simple_repeat Simple_repeat 1 98 0 3 1777 360 0 0 0 chr3 156277594 156277634 -3322149 + (GA)n Simple_repeat Simple_repeat 2 41 0 3 1777 260 294 111 56 chr3 156278043 156278169 -3321614 - MLT1G3 LTR MaLR -2 593 461 3 1777 1515 255 94 3 chr3 156278253 156278626 -3321157 + MTD LTR MaLR 5 411 -8 3 1777 330 343 84 32 chr3 156278953 156279263 -3320520 - L1M3e LINE L1 -4955 2075 1750 3 1777 233 167 0 18 chr3 156280572 156280627 -3319156 + (CA)n Simple_repeat Simple_repeat 1 54 0 3 1777 396 0 0 0 chr3 156280926 156280970 -3318813 + (CA)n Simple_repeat Simple_repeat 1 44 0 3 1777 369 75 0 0 chr3 156280974 156281027 -3318756 + Lx3C LINE L1 5713 5765 -1244 3 1777 3227 128 24 0 chr3 156281024 156281557 -3318226 + Lx3C LINE L1 6046 6591 -385 3 1777 24 53 0 0 chr3 156281754 156281792 -3317991 + AT_rich Low_complexity Low_complexity 1 38 0 3 1777 2598 141 0 9 chr3 156282388 156282824 -3316959 - L1_Mus4 LINE L1 0 6636 6205 3 1777 7071 84 9 1 chr3 156284517 156286206 -3313577 + L1_Mus2 LINE L1 4866 6565 -1 3 1777 22 56 0 0 chr3 156286209 156286245 -3313538 + AT_rich Low_complexity Low_complexity 1 36 0 3 1777 23 54 0 0 chr3 156286832 156286869 -3312914 + AT_rich Low_complexity Low_complexity 1 37 0 3 1777 432 320 55 73 chr3 156287974 156288193 -3311590 + B3 SINE B2 2 216 0 3 1777 1151 88 0 0 chr3 156290356 156290503 -3309280 - B1_Mm SINE Alu 0 147 1 3 1777 255 344 30 15 chr3 156290778 156290911 -3308872 + MLT2B2 LTR ERVL 386 520 -42 3 1777 293 338 0 0 chr3 156291200 156291277 -3308506 + ID4 SINE ID 1 77 -6 4 1777 285 298 126 9 chr3 156291616 156291832 -3307951 + L2a LINE L2 3151 3405 -21 4 1777 456 19 0 0 chr3 156292933 156292986 -3306797 + (CA)n Simple_repeat Simple_repeat 1 53 0 4 1777 1498 245 44 35 chr3 156293208 156293660 -3306123 + Lx6 LINE L1 6990 7445 -15 4 1777 289 268 14 0 chr3 156294258 156294329 -3305454 + ID4_ SINE ID 12 83 0 4 1777 372 350 109 42 chr3 156296655 156297255 -3302528 - Lx8 LINE L1 -352 7121 6482 4 1777 2271 191 5 32 chr3 156297263 156297338 -3302445 + MTC LTR MaLR 1 75 -346 4 1777 2604 84 39 8 chr3 156297338 156297724 -3302059 + L1_Mus3 LINE L1 6236 6633 -5 4 1777 2271 191 5 32 chr3 156297724 156298081 -3301702 + MTC LTR MaLR 76 421 0 4 1777 374 297 62 0 chr3 156298129 156298274 -3301509 - Lx8 LINE L1 -1061 6412 6259 4 1777 23 33 0 0 chr3 156299120 156299150 -3300633 + AT_rich Low_complexity Low_complexity 1 30 0 4 1777 1323 289 37 8 chr3 156299372 156299853 -3299930 + L1_Rod LINE L1 514 1008 -6600 4 1777 6924 80 42 0 chr3 156299853 156300860 -3298923 + L1_Mus3 LINE L1 5590 6638 0 4 1777 1537 196 149 10 chr3 156300873 156301222 -3298561 + L1_Rod LINE L1 1030 1426 -4421 4 1777 459 0 0 0 chr3 156301222 156301273 -3298510 + (TA)n Simple_repeat Simple_repeat 1 51 0 4 1777 1537 206 66 9 chr3 156301273 156301558 -3298225 + L1_Rod LINE L1 1427 1728 -4119 4 1777 816 48 0 0 chr3 156302829 156302934 -3296849 + (TATATG)n Simple_repeat Simple_repeat 4 108 0 4 1777 272 242 15 15 chr3 156303046 156303113 -3296670 + CT-rich Low_complexity Low_complexity 3 69 0 4 1777 281 330 58 17 chr3 156303223 156303343 -3296440 + RSINE1 SINE B4 4 128 -37 4 1777 462 65 0 0 chr3 156303379 156303441 -3296342 + (CA)n Simple_repeat Simple_repeat 2 63 0 4 1777 350 195 11 0 chr3 156305396 156305483 -3294300 + (CA)n Simple_repeat Simple_repeat 1 88 0 4 1777 666 101 0 0 chr3 156305483 156305592 -3294191 + (GA)n Simple_repeat Simple_repeat 2 110 0 4 1777 589 249 135 28 chr3 156306102 156306280 -3293503 + B3A SINE B2 2 198 0 4 1777 531 0 0 0 chr3 156307188 156307247 -3292536 + (TTTTA)n Simple_repeat Simple_repeat 4 62 0 4 1777 2235 115 107 11 chr3 156307267 156307753 -3292030 - L1_Mus3 LINE L1 -3 6994 6245 4 1777 213 39 0 0 chr3 156309572 156309598 -3290185 + (T)n Simple_repeat Simple_repeat 1 26 0 4 1777 1490 164 12 0 chr3 156309696 156309952 -3289831 + MT2B LTR ERVL 339 597 -4 4 1777 611 337 108 0 chr3 156310045 156310294 -3289489 - B4 SINE B4 -5 287 12 4 1777 1035 103 114 11 chr3 156310865 156311041 -3288742 - B2_Mm2 SINE B2 0 195 2 4 1777 293 47 23 0 chr3 156311829 156311872 -3287911 + (CAAAA)n Simple_repeat Simple_repeat 3 46 0 4 1777 810 48 0 0 chr3 156313146 156313249 -3286534 + (TTTCC)n Simple_repeat Simple_repeat 4 106 0 4 1777 23 33 0 0 chr3 156313737 156313767 -3286016 + AT_rich Low_complexity Low_complexity 1 30 0 4 1777 440 251 76 37 chr3 156314332 156314562 -3285221 + ORR1E LTR MaLR 40 359 -20 4 1777 25 31 0 0 chr3 156315370 156315402 -3284381 + AT_rich Low_complexity Low_complexity 1 32 0 4 1777 318 294 0 84 chr3 156317079 156317198 -3282585 + PB1D7 SINE Alu 6 114 -6 4 1777 2746 85 21 5 chr3 156318045 156318434 -3281349 + MTB LTR MaLR 1 395 -5 4 1777 232 304 20 71 chr3 156318455 156318554 -3281229 - L2a LINE L2 -94 3332 3239 4 1777 267 250 70 18 chr3 156321014 156321128 -3278655 - L1MA6 LINE L1 -339 5961 5842 4 1777 475 204 103 58 chr3 156321148 156321304 -3278479 - B2_Mm2 SINE B2 -32 163 1 4 1777 369 0 0 0 chr3 156321368 156321409 -3278374 + (TG)n Simple_repeat Simple_repeat 1 41 0 4 1777 1213 58 12 0 chr3 156321683 156321854 -3277929 + (GA)n Simple_repeat Simple_repeat 2 174 0 4 1777 306 0 0 0 chr3 156322928 156322962 -3276821 + (TG)n Simple_repeat Simple_repeat 1 34 0 4 1777 324 0 0 0 chr3 156322962 156322997 -3276786 + (GA)n Simple_repeat Simple_repeat 1 36 0 4 1777 272 332 40 31 chr3 156323056 156323220 -3276563 - RSINE1 SINE B4 -118 174 2 4 1777 624 169 16 0 chr3 156325017 156325141 -3274642 - URR1B DNA MER1_type -15 210 85 4 1777 246 360 80 14 chr3 156325247 156325385 -3274398 - MER20 DNA MER1_type -42 177 31 4 1777 31 0 0 0 chr3 156326793 156326824 -3272959 + AT_rich Low_complexity Low_complexity 1 31 0 4 1777 214 303 0 29 chr3 156329330 156329398 -3270385 + B4A SINE B4 14 79 -213 4 1777 357 24 0 0 chr3 156329568 156329610 -3270173 + (CA)n Simple_repeat Simple_repeat 1 42 0 4 1777 432 0 0 0 chr3 156330479 156330527 -3269256 + (TA)n Simple_repeat Simple_repeat 2 49 0 4 1777 225 0 0 0 chr3 156330555 156330580 -3269203 + (TG)n Simple_repeat Simple_repeat 2 26 0 4 1777 225 171 0 24 chr3 156330654 156330696 -3269087 + tRNA-Met_ tRNA tRNA 1 41 -35 4 1777 250 184 144 58 chr3 156331807 156331911 -3267872 - MER110 LTR ERV1 -66 425 313 4 1777 606 297 106 37 chr3 156332271 156332488 -3267295 + B4A SINE B4 57 288 -4 4 1777 6004 52 0 3 chr3 156332595 156333342 -3266441 - L1Md_F2 LINE L1 -1 6581 5837 4 1777 2414 65 3 0 chr3 156333396 156333706 -3266077 - L1_Mus1 LINE L1 0 6567 6257 4 1777 332 303 127 58 chr3 156334217 156334406 -3265377 + B3 SINE B2 2 203 -13 4 1777 197 108 27 0 chr3 156334406 156334443 -3265340 + (CATA)n Simple_repeat Simple_repeat 1 38 0 4 1777 246 344 104 24 chr3 156335396 156335771 -3264012 - Lx8 LINE L1 -6 7467 7063 4 1777 4550 60 3 0 chr3 156335826 156336394 -3263389 - L1_Mus1 LINE L1 -1 6566 5997 4 1777 680 47 0 0 chr3 156336394 156336480 -3263303 - L1_Mus1 LINE L1 -895 5672 5587 4 1777 221 256 12 0 chr3 156337770 156337852 -3261931 + (CA)n Simple_repeat Simple_repeat 1 83 0 4 1777 276 100 0 0 chr3 156337943 156337983 -3261800 + (TC)n Simple_repeat Simple_repeat 1 40 0 4 1777 1072 64 43 0 chr3 156340330 156340471 -3259312 + B1_Mus2 SINE Alu 1 147 0 4 1777 865 251 6 0 chr3 156342417 156342588 -3257195 - B3A SINE B2 -25 173 2 4 1777 22 35 0 0 chr3 156343876 156343905 -3255878 + AT_rich Low_complexity Low_complexity 1 29 0 4 1777 245 301 91 64 chr3 156344262 156344372 -3255411 + RMER12 LTR ERVK 739 851 -471 4 1777 28 0 0 0 chr3 156344754 156344782 -3255001 + AT_rich Low_complexity Low_complexity 1 28 0 4 1777 1465 202 40 3 chr3 156345420 156345742 -3254041 - Lx3C LINE L1 -2 6974 6641 4 1777 3783 181 13 9 chr3 156345749 156346563 -3253220 - Lx3C LINE L1 -630 6346 5537 4 1777 485 242 75 8 chr3 156348215 156348348 -3251435 + Lx8 LINE L1 6805 6946 -527 4 1777 230 214 9 75 chr3 156349238 156349344 -3250439 + (CA)n Simple_repeat Simple_repeat 2 100 0 4 1777 280 186 16 81 chr3 156349386 156349509 -3250274 + (CA)n Simple_repeat Simple_repeat 2 116 0 4 1777 240 59 0 0 chr3 156350536 156350570 -3249213 + (TG)n Simple_repeat Simple_repeat 1 34 0 4 1777 466 320 109 34 chr3 156350590 156350855 -3248928 - B4A SINE B4 0 292 8 4 1777 297 75 0 0 chr3 156351232 156351272 -3248511 + (CA)n Simple_repeat Simple_repeat 2 41 0 4 1777 534 247 67 50 chr3 156351974 156352153 -3247630 - B3A SINE B2 -16 182 1 4 1777 329 285 119 50 chr3 156352729 156352888 -3246895 + HAL1-3A_ME LINE L1 2270 2439 -419 4 1777 476 202 28 23 chr3 156352908 156353085 -3246698 + GA-rich Low_complexity Low_complexity 1 178 0 4 1777 23 0 0 0 chr3 156354282 156354305 -3245478 + AT_rich Low_complexity Low_complexity 1 23 0 4 1777 354 188 45 101 chr3 156354892 156354981 -3244802 + B3A SINE B2 2 85 -113 4 1777 3583 89 10 2 chr3 156355239 156355735 -3244048 - L1_Mus3 LINE L1 -8 6630 6131 4 1777 261 228 0 0 chr3 156356270 156356349 -3243434 + (TG)n Simple_repeat Simple_repeat 2 80 0 4 1777 1697 145 101 0 chr3 156356751 156357048 -3242735 + ORR1A2 LTR MaLR 1 327 0 4 1777 3303 174 30 30 chr3 156357527 156358203 -3241580 - Lx4B LINE L1 0 7058 6383 4 1777 2427 190 46 1 chr3 156358203 156358965 -3240818 - Lx4B LINE L1 -938 6120 5333 4 1777 1150 70 0 0 chr3 156360599 156360742 -3239041 + B1_Mus1 SINE Alu 1 143 -5 4 1777 297 0 0 0 chr3 156362235 156362268 -3237515 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 4 1777 1149 52 0 0 chr3 156362269 156362405 -3237378 - B1_Mus1 SINE Alu -12 136 1 4 1777 214 374 46 69 chr3 156362513 156362619 -3237164 - B3 SINE B2 -1 215 3 4 1777 429 304 0 0 chr3 156362619 156362731 -3237052 - RSINE1 SINE B4 -50 115 4 4 1777 378 0 0 0 chr3 156363891 156363933 -3235850 + (TA)n Simple_repeat Simple_repeat 1 42 0 4 1777 242 280 13 26 chr3 156364534 156364611 -3235172 + (TAGA)n Simple_repeat Simple_repeat 1 76 0 4 1777 571 136 18 0 chr3 156364627 156364737 -3235046 + (TAGA)n Simple_repeat Simple_repeat 3 114 0 4 1777 759 137 23 11 chr3 156364770 156364947 -3234836 + (TAGA)n Simple_repeat Simple_repeat 2 180 0 4 1777 450 327 89 0 chr3 156365128 156365385 -3234398 + Tigger13a DNA MER2_type 124 403 -368 4 1777 317 360 93 41 chr3 156365502 156365771 -3234012 - MLT1D LTR MaLR -130 375 93 4 1777 281 296 15 46 chr3 156365924 156366055 -3233728 + GA-rich Low_complexity Low_complexity 6 132 0 4 1777 213 94 0 0 chr3 156366847 156366879 -3232904 + (T)n Simple_repeat Simple_repeat 1 32 0 4 222 7669 29 0 0 chr3 156368830 156369724 -3230059 + L1Md_T LINE L1 5689 6582 0 4 1778 1974 147 53 74 chr3 156370615 156371008 -3228775 + ORR1B1 LTR MaLR 1 411 -10 4 1778 642 79 0 0 chr3 156372148 156372237 -3227546 + (TG)n Simple_repeat Simple_repeat 2 90 0 4 1778 406 245 228 100 chr3 156372248 156372507 -3227276 - B4A SINE B4 0 292 1 4 1778 3130 123 24 18 chr3 156372700 156373211 -3226572 + Lx2 LINE L1 6484 6997 0 4 1778 3861 151 94 106 chr3 156373284 156374197 -3225586 + RMER19B LTR ERVK 1 902 0 4 1778 21 0 0 0 chr3 156375530 156375551 -3224232 + AT_rich Low_complexity Low_complexity 1 21 0 4 1778 681 162 6 11 chr3 156377879 156378054 -3221729 + (CA)n Simple_repeat Simple_repeat 1 174 0 4 1778 189 147 0 0 chr3 156378066 156378100 -3221683 + (CA)n Simple_repeat Simple_repeat 2 35 0 4 1778 239 73 49 0 chr3 156378100 156378141 -3221642 + (CAGAGA)n Simple_repeat Simple_repeat 6 48 0 4 1778 21 0 0 0 chr3 156379731 156379752 -3220031 + AT_rich Low_complexity Low_complexity 1 21 0 4 1778 7047 75 8 1 chr3 156380125 156381368 -3218415 - L1_Mus1 LINE L1 0 6567 5316 4 1778 651 180 0 0 chr3 156382633 156382783 -3217000 + (TG)n Simple_repeat Simple_repeat 1 150 0 5 1778 315 67 0 43 chr3 156382784 156382831 -3216952 - HAL1-3A_ME LINE L1 -839 2019 1975 5 1778 2846 18 0 9 chr3 156382851 156383192 -3216591 + ORR1A0 LTR MaLR 1 338 -8 5 1778 435 83 0 0 chr3 156383196 156383256 -3216527 + (TG)n Simple_repeat Simple_repeat 2 61 0 5 1778 436 328 146 39 chr3 156383257 156383517 -3216266 - B4A SINE B4 0 292 5 5 1778 231 170 0 0 chr3 156384641 156384688 -3215095 + CT-rich Low_complexity Low_complexity 3 49 0 5 1778 384 286 25 0 chr3 156384995 156385156 -3214627 + (TA)n Simple_repeat Simple_repeat 2 166 0 5 1778 235 300 139 10 chr3 156385224 156385325 -3214458 + PB1D10 SINE Alu 3 116 -1 5 1778 647 81 28 35 chr3 156385994 156386135 -3213648 + (TCTA)n Simple_repeat Simple_repeat 3 142 0 5 1778 527 144 10 0 chr3 156386147 156386244 -3213539 + (TA)n Simple_repeat Simple_repeat 1 98 0 5 1778 384 93 26 13 chr3 156386264 156386340 -3213443 + (TCTA)n Simple_repeat Simple_repeat 4 80 0 5 1778 282 343 28 35 chr3 156386608 156386753 -3213030 - MLT1A1 LTR MaLR -8 400 257 5 1778 398 321 58 11 chr3 156387069 156387258 -3212525 - MER92B LTR ERV1 -72 564 367 5 1778 283 314 12 0 chr3 156387305 156387391 -3212392 - MER92B LTR ERV1 -419 217 131 5 1778 3685 21 0 0 chr3 156387917 156388345 -3211438 - L1Md_A LINE L1 0 6582 6161 5 1778 264 56 0 0 chr3 156388345 156388374 -3211409 + (T)n Simple_repeat Simple_repeat 1 29 0 5 1778 38378 16 1 7 chr3 156388374 156394777 -3205006 - L1Md_T LINE L1 0 6582 225 5 1778 210 191 29 29 chr3 156394816 156394886 -3204897 + T-rich Low_complexity Low_complexity 1 70 0 5 1778 297 194 14 0 chr3 156396566 156396638 -3203145 - Lx9 LINE L1 -1 7643 7571 5 1778 462 36 0 0 chr3 156396689 156396745 -3203038 + (CATA)n Simple_repeat Simple_repeat 1 56 0 5 1778 306 0 0 0 chr3 156396745 156396779 -3203004 + (TG)n Simple_repeat Simple_repeat 1 34 0 5 1778 1222 229 62 0 chr3 156396789 156397126 -3202657 - Lx9 LINE L1 -208 7436 7079 5 1778 393 274 0 10 chr3 156397592 156397688 -3202095 + MTE2b LTR MaLR 4 98 -281 5 1778 561 103 51 0 chr3 156397804 156397921 -3201862 + CT-rich Low_complexity Low_complexity 1 123 0 5 1778 350 235 31 63 chr3 156398052 156398207 -3201576 + MTE2b LTR MaLR 139 290 -89 5 1778 416 304 78 1 chr3 156398210 156398353 -3201430 + MTE2b LTR MaLR 215 367 -12 5 1778 1290 217 76 20 chr3 156398610 156398967 -3200816 + Lx9 LINE L1 7252 7628 -16 5 1778 212 348 6 6 chr3 156399514 156399693 -3200090 + (CCA)n Simple_repeat Simple_repeat 1 179 0 5 1778 228 320 15 52 chr3 156399768 156399903 -3199880 - L1_Rod LINE L1 -60 5787 5658 5 1778 528 380 0 0 chr3 156401966 156402124 -3197659 + RSINE1 SINE B4 4 161 -4 5 1778 1083 102 0 0 chr3 156402466 156402613 -3197170 + B1_Mm SINE Alu 1 147 0 5 1778 318 86 14 54 chr3 156403651 156403725 -3196058 + T-rich Low_complexity Low_complexity 2 72 0 5 1778 203 193 12 35 chr3 156403918 156404004 -3195779 + (CATATA)n Simple_repeat Simple_repeat 6 89 0 5 1778 373 81 16 16 chr3 156404041 156404104 -3195679 + (TA)n Simple_repeat Simple_repeat 1 63 0 5 1778 453 370 18 53 chr3 156404124 156404295 -3195488 - RSINE1 SINE B4 0 165 1 5 1778 267 103 0 0 chr3 156405279 156405318 -3194465 + (TTA)n Simple_repeat Simple_repeat 1 39 0 5 1778 25 0 0 0 chr3 156405360 156405385 -3194398 + AT_rich Low_complexity Low_complexity 1 25 0 5 1778 208 167 0 59 chr3 156405831 156405882 -3193901 + (CATA)n Simple_repeat Simple_repeat 2 49 0 5 1778 471 35 0 0 chr3 156406854 156406911 -3192872 + (TA)n Simple_repeat Simple_repeat 1 57 0 5 1778 225 0 0 0 chr3 156406911 156406936 -3192847 + (CA)n Simple_repeat Simple_repeat 1 25 0 5 1778 634 280 146 42 chr3 156407262 156407523 -3192260 - B4 SINE B4 0 292 5 5 1778 219 36 0 0 chr3 156407788 156407816 -3191967 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 5 1778 425 228 153 18 chr3 156409303 156409473 -3190310 - Lx8 LINE L1 -360 7113 6921 5 1778 362 291 109 8 chr3 156409676 156409804 -3189979 + B4 SINE B4 7 147 -145 5 1778 293 339 9 0 chr3 156411416 156411525 -3188258 + PB1D7 SINE Alu 2 111 -9 5 1778 586 100 20 0 chr3 156411546 156411646 -3188137 + (GGAA)n Simple_repeat Simple_repeat 2 103 0 5 1778 614 303 116 46 chr3 156411677 156412006 -3187777 + MT2A LTR ERVL 16 367 -166 5 1778 252 100 0 0 chr3 156414016 156414056 -3185727 + (CATG)n Simple_repeat Simple_repeat 3 42 0 5 1778 725 243 35 0 chr3 156414056 156414200 -3185583 - B3 SINE B2 -67 149 1 5 1778 238 360 51 59 chr3 156416582 156416700 -3183083 + PB1D7 SINE Alu 3 119 -1 5 1778 186 167 0 0 chr3 156416809 156416845 -3182938 + A-rich Low_complexity Low_complexity 1 36 0 5 1778 35 41 0 0 chr3 156417696 156417745 -3182038 + AT_rich Low_complexity Low_complexity 1 49 0 5 1778 594 128 0 0 chr3 156418098 156418192 -3181591 + (GAAAA)n Simple_repeat Simple_repeat 2 95 0 5 1778 300 244 24 24 chr3 156419156 156419240 -3180543 + (TATG)n Simple_repeat Simple_repeat 4 87 0 5 1778 267 364 119 0 chr3 156419252 156419370 -3180413 - ID_B1 SINE B4 -9 215 84 5 1778 504 307 138 12 chr3 156419749 156420003 -3179780 - MLT1F LTR MaLR -261 287 2 5 1778 529 219 0 0 chr3 156420497 156420593 -3179190 - PB1D10 SINE Alu -21 96 1 5 1778 327 246 41 98 chr3 156420593 156420620 -3179163 - MT2B LTR ERVL -445 156 137 5 1778 1107 78 7 0 chr3 156421992 156422145 -3177638 + L1_Mus1 LINE L1 6414 6567 0 5 1778 509 306 86 12 chr3 156422155 156422317 -3177466 + B3A SINE B2 9 182 -16 5 1778 21 36 0 0 chr3 156422334 156422362 -3177421 + AT_rich Low_complexity Low_complexity 1 28 0 5 1778 1026 206 0 47 chr3 156422576 156422810 -3176973 - URR1B DNA MER1_type -2 223 1 5 1778 277 303 171 18 chr3 156423133 156423244 -3176539 - RSINE1 SINE B4 -36 129 2 5 1778 907 201 75 86 chr3 156423310 156423577 -3176206 - MERVL_2A-int LTR ERVL -5488 273 10 5 1778 258 208 0 0 chr3 156423593 156423641 -3176142 - Ricksha_c DNA MuDR -1136 912 865 5 1778 414 0 0 0 chr3 156424195 156424241 -3175542 + (TTTA)n Simple_repeat Simple_repeat 2 47 0 5 1778 189 0 0 0 chr3 156424399 156424420 -3175363 + (CAAA)n Simple_repeat Simple_repeat 4 24 0 5 1778 2275 196 87 26 chr3 156424764 156424832 -3174951 - RLTR11A LTR ERVK -1 527 464 5 1778 1108 62 0 0 chr3 156424832 156424977 -3174806 + L1_Mus1 LINE L1 6423 6567 0 5 1778 2275 196 87 26 chr3 156424977 156425405 -3174378 - RLTR11A LTR ERVK -65 463 1 5 1778 3480 63 0 5 chr3 156425762 156426210 -3173573 + L1Md_F2 LINE L1 6136 6581 -1 5 1778 296 292 114 16 chr3 156426218 156426409 -3173374 - RLTR11A LTR ERVK -287 241 32 5 1778 5083 114 11 8 chr3 156426993 156427728 -3172055 - RMER19A LTR ERVK 0 737 1 5 1778 258 32 0 0 chr3 156428509 156428540 -3171243 + (GA)n Simple_repeat Simple_repeat 2 32 0 5 1778 405 0 0 0 chr3 156428540 156428585 -3171198 + (TG)n Simple_repeat Simple_repeat 2 46 0 5 1778 236 111 0 60 chr3 156430013 156430054 -3169729 + polypurine Low_complexity Low_complexity 3 42 0 5 1778 1141 94 0 22 chr3 156430054 156430238 -3169545 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 5 1778 236 111 0 60 chr3 156430238 156430263 -3169520 + polypurine Low_complexity Low_complexity 43 65 0 5 1778 255 177 0 0 chr3 156431017 156431079 -3168704 + (CA)n Simple_repeat Simple_repeat 1 62 0 5 1778 436 301 0 3 chr3 156431100 156431456 -3168327 + (CA)n Simple_repeat Simple_repeat 1 355 0 5 1778 261 438 0 7 chr3 156431344 156431498 -3168285 + (CACG)n Simple_repeat Simple_repeat 4 156 0 5 1778 327 25 0 0 chr3 156431502 156431542 -3168241 + (CA)n Simple_repeat Simple_repeat 1 40 0 5 1778 418 200 0 0 chr3 156432873 156432943 -3166840 + tRNA-Val-GTG tRNA tRNA 4 73 -3 5 1778 1091 130 0 0 chr3 156432962 156433124 -3166659 + B2_Mm2 SINE B2 1 162 -33 5 1778 26 30 0 0 chr3 156435080 156435113 -3164670 + AT_rich Low_complexity Low_complexity 1 33 0 5 1778 191 240 39 0 chr3 156436768 156436872 -3162911 + GA-rich Low_complexity Low_complexity 1 108 0 5 1778 829 163 21 42 chr3 156439130 156439322 -3160461 + L1_Mus2 LINE L1 6377 6564 -2 5 1778 25 0 0 0 chr3 156439322 156439347 -3160436 + AT_rich Low_complexity Low_complexity 1 25 0 5 1778 279 0 0 0 chr3 156439766 156439797 -3159986 + (TTTG)n Simple_repeat Simple_repeat 3 33 0 5 1778 275 270 40 0 chr3 156439806 156439880 -3159903 + MER3 DNA MER1_type 133 209 0 5 1778 240 208 17 86 chr3 156439830 156439888 -3159895 - MER3 DNA MER1_type -111 98 45 5 1778 537 331 0 48 chr3 156443904 156444072 -3155711 - RSINE1 SINE B4 0 165 6 5 1778 302 325 86 57 chr3 156445633 156445842 -3153941 - L1M4 LINE L1 -2275 3871 3657 5 1778 21 0 0 0 chr3 156446104 156446125 -3153658 + AT_rich Low_complexity Low_complexity 1 21 0 5 1778 678 65 0 0 chr3 156446327 156446419 -3153364 + (TG)n Simple_repeat Simple_repeat 1 92 0 5 1778 192 97 0 0 chr3 156446684 156446715 -3153068 + (T)n Simple_repeat Simple_repeat 1 31 0 5 1778 483 185 0 0 chr3 156447144 156447295 -3152488 + CT-rich Low_complexity Low_complexity 1 151 0 5 1778 546 79 0 0 chr3 156447846 156447922 -3151861 + (TG)n Simple_repeat Simple_repeat 1 76 0 5 1778 1555 184 82 57 chr3 156447942 156448374 -3151409 - RMER16 LTR ERVK 0 533 1 5 1778 288 0 0 0 chr3 156448988 156449020 -3150763 + (TG)n Simple_repeat Simple_repeat 1 32 0 5 1778 305 338 35 21 chr3 156450589 156450734 -3149049 - Charlie18a DNA MER1_type -169 173 27 5 1778 310 264 60 0 chr3 156451541 156451644 -3148139 - B1F2 SINE Alu -7 110 2 5 1778 1125 95 0 0 chr3 156451680 156451827 -3147956 - B1_Mus1 SINE Alu 0 148 2 5 1778 2080 206 31 21 chr3 156452100 156452679 -3147104 - L1_Mur3 LINE L1 -3955 1925 1341 5 1778 432 55 0 0 chr3 156455488 156455543 -3144240 + (CA)n Simple_repeat Simple_repeat 1 55 0 5 1778 29 28 0 0 chr3 156458153 156458189 -3141594 + AT_rich Low_complexity Low_complexity 1 36 0 5 1778 514 254 159 0 chr3 156458221 156458359 -3141424 - B3 SINE B2 -10 206 47 6 1778 1087 185 119 21 chr3 156458557 156458800 -3140983 - MT2A LTR ERVL -266 267 1 6 1778 22 0 0 0 chr3 156460181 156460203 -3139580 + AT_rich Low_complexity Low_complexity 1 22 0 6 1778 909 74 0 0 chr3 156460974 156461096 -3138687 + (TTC)n Simple_repeat Simple_repeat 2 123 0 6 1778 1158 69 0 0 chr3 156461096 156461240 -3138543 - B1_Mus2 SINE Alu -3 144 1 6 1778 431 99 40 0 chr3 156462076 156462177 -3137606 + (TTTTG)n Simple_repeat Simple_repeat 2 106 0 6 1778 2066 82 110 18 chr3 156462506 156462842 -3136941 - IAPLTR1_Mm LTR ERVK 0 367 1 6 1778 27330 22 1 5 chr3 156462846 156466127 -3133656 - IAPEz-int LTR ERVK -3 6478 3210 6 1778 8485 76 43 9 chr3 156466126 156467389 -3132394 - IAPEz-int LTR ERVK -5168 1313 8 6 1778 2066 82 110 18 chr3 156467389 156467725 -3132058 - IAPLTR1_Mm LTR ERVK 0 367 1 6 1778 180 180 63 32 chr3 156468584 156468647 -3131136 - MIRc SINE MIR -109 159 95 6 1778 27 73 0 0 chr3 156469804 156469859 -3129924 + AT_rich Low_complexity Low_complexity 1 55 0 6 1778 378 0 0 0 chr3 156471713 156471755 -3128028 + (CA)n Simple_repeat Simple_repeat 1 42 0 6 1778 356 305 14 132 chr3 156471987 156472031 -3127752 - B2_Mm1t SINE B2 0 193 152 6 1778 492 18 0 0 chr3 156472031 156472088 -3127695 + (TC)n Simple_repeat Simple_repeat 2 58 0 6 1778 180 0 0 0 chr3 156472088 156472107 -3127676 + (TG)n Simple_repeat Simple_repeat 1 20 0 6 1778 356 305 14 132 chr3 156472107 156472129 -3127654 - B2_Mm1t SINE B2 -42 151 138 6 1778 492 18 0 0 chr3 156472129 156472186 -3127597 + (CA)n Simple_repeat Simple_repeat 1 57 0 6 1778 554 313 77 12 chr3 156472186 156472336 -3127447 - B3 SINE B2 -53 163 1 6 1778 526 191 134 34 chr3 156473193 156473372 -3126411 + Lx9 LINE L1 7446 7642 -2 6 1778 24 0 0 0 chr3 156473372 156473396 -3126387 + AT_rich Low_complexity Low_complexity 1 24 0 6 1778 185 308 176 8 chr3 156473491 156473622 -3126161 - L2 LINE L2 -860 2559 2407 6 1778 22 0 0 0 chr3 156473813 156473835 -3125948 + AT_rich Low_complexity Low_complexity 1 22 0 6 1778 4051 138 140 47 chr3 156474205 156474736 -3125047 - RMER17A2 LTR ERVK 0 906 341 6 1778 285 29 0 0 chr3 156474736 156474770 -3125013 + (GA)n Simple_repeat Simple_repeat 1 34 0 6 1778 4051 138 140 47 chr3 156474770 156475066 -3124717 - RMER17A2 LTR ERVK -566 340 2 6 1778 988 210 18 9 chr3 156475172 156475393 -3124390 + URR1B DNA MER1_type 2 224 -1 6 1778 1222 179 53 21 chr3 156475516 156475914 -3123869 + RLTR17 LTR ERVK 228 686 -6 6 1778 697 288 37 27 chr3 156476715 156477015 -3122768 + MER33 DNA MER1_type 22 324 0 6 1778 26 0 0 0 chr3 156477133 156477159 -3122624 + AT_rich Low_complexity Low_complexity 1 26 0 6 1778 572 201 161 29 chr3 156478801 156478975 -3120808 - RMER1C Other Other 0 1342 1146 6 1778 1045 182 25 128 chr3 156479545 156479866 -3119917 - RMER1C Other Other -214 1128 841 6 1778 1718 223 178 9 chr3 156481479 156482017 -3117766 - Lx9 LINE L1 -170 7474 6846 6 1778 672 13 0 0 chr3 156483033 156483110 -3116673 + (TC)n Simple_repeat Simple_repeat 1 77 0 6 1778 1024 114 6 0 chr3 156483515 156483673 -3116110 + L1_Mus2 LINE L1 6402 6560 -6 6 1778 383 354 14 5 chr3 156484816 156484982 -3114801 + B3 SINE B2 15 213 -3 6 1778 253 338 189 6 chr3 156485111 156485275 -3114508 + MIRb SINE MIR 31 224 -44 6 1778 230 303 13 13 chr3 156485513 156485590 -3114193 + MIR SINE MIR 1 77 -185 6 1778 1833 213 103 66 chr3 156487870 156488403 -3111380 - RLTR31_Mur LTR ERVK 0 553 1 6 1778 509 135 11 0 chr3 156490468 156490557 -3109226 + (TA)n Simple_repeat Simple_repeat 2 91 0 6 1778 411 214 0 0 chr3 156492095 156492226 -3107557 + (CATA)n Simple_repeat Simple_repeat 4 134 0 6 1778 210 171 0 0 chr3 156492725 156492766 -3107017 + (TG)n Simple_repeat Simple_repeat 2 42 0 6 1778 187 247 107 36 chr3 156494989 156495073 -3104710 + MIRc SINE MIR 2 91 -177 6 1778 193 89 44 0 chr3 156496251 156496296 -3103487 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 6 1778 23 33 0 0 chr3 156498631 156498661 -3101122 + AT_rich Low_complexity Low_complexity 1 30 0 6 1778 189 147 0 0 chr3 156499317 156499351 -3100432 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 6 1778 748 243 0 0 chr3 156499388 156499532 -3100251 - RSINE1 SINE B4 -19 146 3 6 222 415 228 237 0 chr3 156499855 156499969 -3099814 + B4 SINE B4 3 143 -149 6 1779 238 296 9 36 chr3 156500097 156500209 -3099574 + RMER12 LTR ERVK 748 856 -466 1 1779 497 268 124 30 chr3 156500220 156500486 -3099297 - B4 SINE B4 0 292 2 2 1779 29 28 0 0 chr3 156501090 156501126 -3098657 + AT_rich Low_complexity Low_complexity 1 36 0 3 1779 749 238 85 0 chr3 156501161 156501350 -3098433 - ORR1D2 LTR MaLR -163 207 3 4 1779 201 103 49 49 chr3 156501374 156501415 -3098368 + CT-rich Low_complexity Low_complexity 3 43 0 5 1779 442 281 69 93 chr3 156502188 156502404 -3097379 - B3A SINE B2 -5 211 1 6 1779 355 312 11 0 chr3 156503617 156503710 -3096073 + RSINE1 SINE B4 2 95 -70 7 1779 547 269 8 13 chr3 156503797 156503964 -3095819 + B3 SINE B2 32 195 -3 8 1779 1460 60 6 0 chr3 156504093 156504275 -3095508 - B2_Mm1a SINE B2 -8 185 3 9 1779 960 264 70 20 chr3 156505121 156505462 -3094321 - ORR1E LTR MaLR 0 359 2 1 1779 244 327 0 0 chr3 156506378 156506430 -3093353 + RSINE1 SINE B4 3 54 -111 1 1779 378 0 0 0 chr3 156506500 156506542 -3093241 + (TC)n Simple_repeat Simple_repeat 1 42 0 1 1779 249 119 0 0 chr3 156506542 156506583 -3093200 + (CA)n Simple_repeat Simple_repeat 1 42 0 1 1779 208 135 0 0 chr3 156507075 156507112 -3092671 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 1779 268 119 29 15 chr3 156507113 156507181 -3092602 + (CAGAGA)n Simple_repeat Simple_repeat 2 70 0 1 1779 22 56 0 0 chr3 156509544 156509580 -3090203 + AT_rich Low_complexity Low_complexity 1 36 0 1 1779 203 152 0 21 chr3 156510596 156510643 -3089140 + (TGGA)n Simple_repeat Simple_repeat 1 46 0 1 1779 298 324 0 0 chr3 156511513 156511587 -3088196 - LFSINE_Vert SINE SINE -301 158 85 1 1779 394 279 114 32 chr3 156513550 156513987 -3085796 + Charlie2a DNA MER1_type 2263 2735 -126 1 1779 197 241 86 0 chr3 156514216 156514274 -3085509 - MIR SINE MIR -84 178 116 2 1779 23 92 0 0 chr3 156514302 156514367 -3085416 + AT_rich Low_complexity Low_complexity 1 65 0 2 1779 3692 186 70 22 chr3 156515855 156516689 -3083094 - Lx3C LINE L1 -2 6974 6101 2 1779 3103 128 0 13 chr3 156516702 156517239 -3082544 + L1_Mur2 LINE L1 4486 5015 -862 2 1779 961 151 209 5 chr3 156518896 156519083 -3080700 + URR1A DNA MER1_type 2 226 0 2 1779 195 320 59 40 chr3 156520676 156520777 -3079006 + MIRb SINE MIR 77 179 -89 2 1779 303 177 0 0 chr3 156522329 156522391 -3077392 + CT-rich Low_complexity Low_complexity 3 64 0 2 1779 231 328 0 15 chr3 156525855 156525923 -3073860 - MTEb LTR MaLR -56 323 257 2 1779 1806 379 79 39 chr3 156526148 156526317 -3073466 - MTE-int LTR MaLR -2 1578 1419 2 1779 1974 203 55 2 chr3 156526317 156526717 -3073066 + MTC LTR MaLR 1 421 0 2 1779 1806 379 79 39 chr3 156526717 156527860 -3071923 - MTE-int LTR MaLR -162 1418 214 2 1779 654 279 52 0 chr3 156527889 156528043 -3071740 - B3A SINE B2 -36 162 1 3 1779 408 324 27 13 chr3 156528043 156528189 -3071594 - MTE-int LTR MaLR -1363 217 70 2 1779 241 299 8 86 chr3 156528539 156528656 -3071127 - MTEa LTR MaLR -270 109 2 3 1779 199 301 34 57 chr3 156529345 156529433 -3070350 - L4 LINE RTE -194 1835 1750 3 1779 21 0 0 0 chr3 156529580 156529601 -3070182 + AT_rich Low_complexity Low_complexity 1 21 0 3 1779 597 239 158 6 chr3 156531093 156531270 -3068513 + RCHARR1 DNA MER1_type 29 232 -742 3 1779 548 260 106 40 chr3 156531319 156531760 -3068023 + RCHARR1 DNA MER1_type 403 900 -74 3 1779 910 228 20 0 chr3 156532210 156532407 -3067376 + B3 SINE B2 9 209 -7 3 1779 441 110 0 0 chr3 156532561 156532634 -3067149 + (TG)n Simple_repeat Simple_repeat 2 74 0 3 1779 243 0 0 0 chr3 156534040 156534067 -3065716 + (A)n Simple_repeat Simple_repeat 1 27 0 3 1779 273 286 149 182 chr3 156536032 156536301 -3063482 + MTE2a LTR MaLR 3 262 -117 3 1779 3570 78 4 6 chr3 156536301 156536801 -3062982 - L1_Mus1 LINE L1 -97 5786 5288 3 1779 6017 71 1 8 chr3 156536801 156537585 -3062198 + L1_Mus1 LINE L1 5789 6567 0 3 1779 410 281 36 22 chr3 156537595 156537733 -3062050 + MTE2a LTR MaLR 234 373 -6 3 1779 330 369 7 72 chr3 156538860 156539012 -3060771 + RSINE1 SINE B4 2 143 -22 4 1779 477 62 0 0 chr3 156539023 156539088 -3060695 + (CA)n Simple_repeat Simple_repeat 2 66 0 4 1779 2332 121 100 51 chr3 156541367 156541777 -3058006 - RLTR23 LTR ERV1 0 430 1 4 1779 1590 208 35 56 chr3 156541808 156542185 -3057598 - ORR1D1 LTR MaLR -5 369 1 4 1779 21 0 0 0 chr3 156542262 156542283 -3057500 + AT_rich Low_complexity Low_complexity 1 21 0 4 1779 238 196 76 0 chr3 156542370 156542462 -3057321 + (TCTA)n Simple_repeat Simple_repeat 1 99 0 4 1779 251 210 42 0 chr3 156542482 156542601 -3057182 + (TCTA)n Simple_repeat Simple_repeat 2 125 0 4 1779 850 311 14 5 chr3 156542691 156542904 -3056879 + B3 SINE B2 1 215 -1 4 1779 1055 95 0 20 chr3 156543198 156543348 -3056435 + B1_Mus2 SINE Alu 1 147 0 4 1779 213 167 0 0 chr3 156543349 156543403 -3056380 + A-rich Low_complexity Low_complexity 1 54 0 4 1779 261 163 0 0 chr3 156544900 156544949 -3054834 + A-rich Low_complexity Low_complexity 1 49 0 4 1779 217 352 125 36 chr3 156545465 156545577 -3054206 + B4A SINE B4 2 123 -169 5 1779 3691 71 27 8 chr3 156546097 156546621 -3053162 - L1Md_F2 LINE L1 -25 6557 6024 5 1779 1876 154 17 62 chr3 156547358 156547774 -3052009 - L1_Mur2 LINE L1 -1463 4414 4018 5 1779 5351 228 50 22 chr3 156547769 156549107 -3050676 + Lx5 LINE L1 5676 7050 0 5 1779 498 33 0 0 chr3 156550333 156550393 -3049390 + (CA)n Simple_repeat Simple_repeat 1 60 0 5 1779 435 38 0 0 chr3 156550393 156550445 -3049338 + (TA)n Simple_repeat Simple_repeat 1 53 0 5 1779 404 140 11 0 chr3 156551723 156551816 -3047967 + CT-rich Low_complexity Low_complexity 1 94 0 5 1779 258 169 0 0 chr3 156551832 156551897 -3047886 + GA-rich Low_complexity Low_complexity 2 66 0 5 1779 304 269 0 0 chr3 156551949 156552027 -3047756 - Lx9 LINE L1 -178 7466 7389 5 1779 210 307 47 102 chr3 156552853 156552980 -3046803 - L2b LINE L2 -27 3348 3229 5 1779 450 0 0 0 chr3 156555396 156555446 -3044337 + (TG)n Simple_repeat Simple_repeat 2 51 0 6 1779 420 20 0 0 chr3 156556376 156556425 -3043358 + (TG)n Simple_repeat Simple_repeat 2 50 0 6 1779 337 332 51 28 chr3 156556670 156556840 -3042943 - MTEa LTR MaLR -120 259 92 6 1779 294 238 50 0 chr3 156556839 156556919 -3042864 + ID_B1 SINE B4 141 224 0 6 1779 1335 50 0 0 chr3 156556997 156557177 -3042606 + (TCCC)n Simple_repeat Simple_repeat 1 180 0 6 1779 233 220 0 0 chr3 156557181 156557231 -3042552 + CT-rich Low_complexity Low_complexity 3 52 0 6 1779 195 159 130 104 chr3 156558381 156558458 -3041325 + MIRc SINE MIR 21 99 -169 6 1779 182 232 88 18 chr3 156560182 156560239 -3039544 - MIR SINE MIR -66 142 82 6 1779 231 61 0 0 chr3 156560562 156560595 -3039188 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 6 1779 21 0 0 0 chr3 156562368 156562389 -3037394 + AT_rich Low_complexity Low_complexity 1 21 0 6 1779 1170 81 0 0 chr3 156562874 156563022 -3036761 - B1_Mus1 SINE Alu 0 148 1 7 1779 22 0 0 0 chr3 156563067 156563089 -3036694 + AT_rich Low_complexity Low_complexity 1 22 0 7 1779 3839 92 31 2 chr3 156563385 156563959 -3035824 + L1_Mus3 LINE L1 6028 6618 -20 7 1779 245 359 38 0 chr3 156565059 156565190 -3034593 + MER5A DNA MER1_type 52 187 -2 7 1779 358 341 90 42 chr3 156565732 156566020 -3033763 + MLT1B LTR MaLR 11 312 -78 7 1779 293 271 12 12 chr3 156566456 156566541 -3033242 - MTEa LTR MaLR -268 111 27 7 1779 21 0 0 0 chr3 156567798 156567819 -3031964 + AT_rich Low_complexity Low_complexity 1 21 0 7 1779 568 336 46 21 chr3 156568894 156569177 -3030606 + Tigger7 DNA MER2_type 268 557 -1934 7 1779 266 194 38 31 chr3 156572116 156572276 -3027507 + (TAGA)n Simple_repeat Simple_repeat 1 161 0 7 1779 26 64 0 0 chr3 156572714 156572761 -3027022 + AT_rich Low_complexity Low_complexity 1 47 0 7 1779 21 0 0 0 chr3 156572876 156572897 -3026886 + AT_rich Low_complexity Low_complexity 1 21 0 8 1779 1126 275 12 27 chr3 156573412 156573816 -3025967 - Lx7 LINE L1 -1564 6132 5735 8 1779 530 161 0 0 chr3 156574011 156574104 -3025679 - Lx7 LINE L1 -159 5721 5629 8 1779 617 196 29 31 chr3 156574098 156574304 -3025479 + Lx7 LINE L1 7369 7540 -156 8 1779 753 255 112 6 chr3 156574320 156574651 -3025132 - L1_Mur3 LINE L1 -1275 4605 4240 8 1779 450 308 119 33 chr3 156574657 156574959 -3024824 - Lx8 LINE L1 -141 7332 7005 8 1779 2836 50 3 0 chr3 156575004 156575347 -3024436 + ORR1A1 LTR MaLR 1 344 -2 8 1779 779 336 18 35 chr3 156576213 156576497 -3023286 - B4A SINE B4 -8 284 6 8 1779 272 221 13 0 chr3 156576529 156576606 -3023177 + (TA)n Simple_repeat Simple_repeat 1 78 0 8 1779 946 316 32 0 chr3 156577112 156577362 -3022421 + B4 SINE B4 33 290 -2 8 1779 5448 38 3 0 chr3 156577869 156578524 -3021259 + L1Md_F2 LINE L1 5926 6582 0 8 1779 473 217 135 77 chr3 156578539 156578709 -3021074 + B3A SINE B2 3 182 -16 9 1779 981 113 0 0 chr3 156579433 156579610 -3020173 + (GA)n Simple_repeat Simple_repeat 2 178 0 9 1779 580 213 19 0 chr3 156579830 156579938 -3019845 + B3 SINE B2 101 210 -6 9 1779 2618 183 60 0 chr3 156580389 156580876 -3018907 + RMER20A LTR ERVK 1 516 0 9 1779 303 277 19 47 chr3 156581968 156582074 -3017709 - MIR SINE MIR -73 189 87 9 1779 657 98 0 0 chr3 156582152 156582264 -3017519 + (GA)n Simple_repeat Simple_repeat 2 113 0 9 1779 378 0 0 0 chr3 156583215 156583257 -3016526 + (CA)n Simple_repeat Simple_repeat 2 43 0 9 1779 335 60 20 0 chr3 156583908 156583958 -3015825 + (TG)n Simple_repeat Simple_repeat 1 51 0 9 1779 225 0 0 0 chr3 156583978 156584003 -3015780 + (CA)n Simple_repeat Simple_repeat 1 25 0 9 1779 187 331 145 54 chr3 156584383 156584770 -3015013 - L2 LINE L2 -363 3056 2635 9 1779 717 23 0 0 chr3 156585060 156585147 -3014636 + (TG)n Simple_repeat Simple_repeat 1 87 0 1 1779 240 0 0 70 chr3 156585688 156585731 -3014052 + (CAAAA)n Simple_repeat Simple_repeat 2 41 0 1 1779 339 272 37 43 chr3 156586405 156586593 -3013190 - Lx8 LINE L1 -2 7471 7285 1 1779 367 192 192 0 chr3 156586599 156586703 -3013080 - Lx8 LINE L1 -341 7132 7009 1 1779 711 108 0 40 chr3 156586703 156586829 -3012954 - Lx LINE L1 -13 6641 6521 1 1779 235 198 71 62 chr3 156586829 156586930 -3012853 + L1_Mur3 LINE L1 1049 1149 -6563 1 1779 3524 62 11 7 chr3 156586931 156587388 -3012395 + L1_Mus2 LINE L1 6108 6566 0 1 1779 322 321 44 7 chr3 156588622 156588757 -3011026 + B1F SINE Alu 5 144 -5 1 1779 195 307 81 73 chr3 156589104 156589227 -3010556 - L2b LINE L2 -218 3157 3034 1 1779 21 0 0 0 chr3 156590990 156591011 -3008772 + AT_rich Low_complexity Low_complexity 1 21 0 1 1779 26 30 0 0 chr3 156591188 156591221 -3008562 + AT_rich Low_complexity Low_complexity 1 33 0 1 1779 235 71 48 0 chr3 156591952 156591994 -3007789 + (GA)n Simple_repeat Simple_repeat 1 44 0 1 1779 276 322 149 6 chr3 156592622 156592803 -3006980 + RMER15 LTR ERVL 353 559 -16 1 1779 512 277 104 32 chr3 156593125 156593376 -3006407 + MLT1A1 LTR MaLR 106 406 -2 1 1779 2611 84 50 8 chr3 156593532 156593750 -3006033 - MTB LTR MaLR 0 400 182 1 1779 186 43 0 0 chr3 156593750 156593773 -3006010 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 1 1779 1227 123 31 50 chr3 156593778 156594000 -3005783 - L1_Mus1 LINE L1 0 6567 6350 1 1779 2611 84 50 8 chr3 156594000 156594159 -3005624 - MTB LTR MaLR -222 178 2 1 1779 239 255 0 0 chr3 156594159 156594202 -3005581 + B3A SINE B2 49 91 -107 1 1779 288 0 0 0 chr3 156594220 156594252 -3005531 + (CA)n Simple_repeat Simple_repeat 2 33 0 1 1779 260 340 86 26 chr3 156594732 156594883 -3004900 + MIR SINE MIR 98 257 -5 1 1779 282 29 0 0 chr3 156595362 156595397 -3004386 + (TTGG)n Simple_repeat Simple_repeat 2 36 0 1 1779 326 327 59 8 chr3 156595399 156595533 -3004250 - B1F SINE Alu -9 140 1 1 1779 21 36 0 0 chr3 156597177 156597205 -3002578 + AT_rich Low_complexity Low_complexity 1 28 0 1 1779 711 284 39 59 chr3 156598044 156598298 -3001485 - MTEa LTR MaLR -28 351 103 1 1779 833 110 7 0 chr3 156598831 156598967 -3000816 + (TA)n Simple_repeat Simple_repeat 2 138 0 1 1779 259 279 181 89 chr3 156599514 156599785 -2999998 - MLT2D LTR ERVL -6 408 113 1 1779 282 95 0 0 chr3 156601709 156601751 -2998032 + (CAG)n Simple_repeat Simple_repeat 1 42 0 1 1779 849 121 170 13 chr3 156602222 156602381 -2997402 - B2_Mm1t SINE B2 -9 184 1 1 1779 396 0 0 0 chr3 156602389 156602433 -2997350 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 1 1779 1006 111 0 0 chr3 156602433 156602568 -2997215 - B1_Mus1 SINE Alu -9 139 5 1 1779 1748 304 45 22 chr3 156602777 156603449 -2996334 - Lx9 LINE L1 -639 7005 6322 1 1779 1866 159 19 3 chr3 156603449 156603771 -2996012 - ORR1A2 LTR MaLR 0 327 1 1 1779 1748 304 45 22 chr3 156603771 156603824 -2995959 - Lx9 LINE L1 -1323 6321 6263 1 1779 242 277 24 89 chr3 156603843 156603966 -2995817 + Lx9 LINE L1 7017 7131 -513 1 1779 467 272 116 16 chr3 156604143 156604401 -2995382 + Lx9 LINE L1 7352 7635 -9 1 1779 548 252 158 0 chr3 156604493 156604632 -2995151 - B3 SINE B2 -7 209 49 1 1779 312 70 0 0 chr3 156605552 156605595 -2994188 + (TCTTG)n Simple_repeat Simple_repeat 5 47 0 1 1779 241 303 30 15 chr3 156605599 156605666 -2994117 - ID_B1 SINE B4 -3 221 154 1 1779 696 299 0 17 chr3 156606109 156606259 -2993524 + B3A SINE B2 1 148 -50 1 1779 342 0 0 0 chr3 156606259 156606297 -2993486 + (CA)n Simple_repeat Simple_repeat 1 38 0 1 1779 696 299 0 17 chr3 156606297 156606323 -2993460 + B3A SINE B2 149 174 -24 1 1779 250 378 7 77 chr3 156606828 156606902 -2992881 - ID_B1 SINE B4 0 224 84 1 1779 268 372 13 0 chr3 156606902 156606980 -2992803 - PB1D10 SINE Alu -36 81 3 1 1779 299 322 43 58 chr3 156607146 156607337 -2992446 + MLT1H LTR MaLR 41 233 -346 1 1779 599 364 60 30 chr3 156607798 156607887 -2991896 - MLT2B2 LTR ERVL -79 436 348 1 1779 1137 259 60 49 chr3 156607887 156608253 -2991530 + ORR1D2 LTR MaLR 1 370 0 1 1779 599 364 60 30 chr3 156608253 156608528 -2991255 - MLT2B2 LTR ERVL -168 347 61 1 1779 359 212 49 74 chr3 156611476 156611598 -2988185 - L1_Rod LINE L1 -1883 3997 3879 1 1779 3204 160 93 12 chr3 156611598 156612192 -2987591 + RLTR26 LTR ERVK 1 642 0 1 1779 791 275 50 24 chr3 156612193 156612491 -2987292 - L1M2 LINE L1 -2229 3914 3609 1 1779 488 328 111 34 chr3 156612526 156613184 -2986599 - L1_Rod LINE L1 -3560 2320 1592 1 1779 180 0 0 0 chr3 156613385 156613405 -2986378 + (TG)n Simple_repeat Simple_repeat 2 21 0 1 1779 581 325 50 28 chr3 156613584 156614144 -2985639 - L1_Rod LINE L1 -4271 1576 1006 1 1779 471 63 0 0 chr3 156616452 156616515 -2983268 + (GA)n Simple_repeat Simple_repeat 2 64 0 1 1779 225 264 39 0 chr3 156617045 156617174 -2982609 + GA-rich Low_complexity Low_complexity 6 139 0 1 1779 378 42 0 0 chr3 156617916 156617964 -2981819 + (TC)n Simple_repeat Simple_repeat 1 48 0 1 1779 465 19 0 0 chr3 156617964 156618018 -2981765 + (TG)n Simple_repeat Simple_repeat 2 55 0 1 1779 551 294 49 28 chr3 156618095 156618349 -2981434 + B4A SINE B4 2 269 -23 1 1779 3536 107 8 36 chr3 156619633 156620157 -2979626 + Lx LINE L1 6144 6652 -2 1 1779 429 20 0 0 chr3 156623401 156623451 -2976332 + (TTGG)n Simple_repeat Simple_repeat 2 51 0 1 1779 286 23 0 0 chr3 156623635 156623679 -2976104 - L1Md_T LINE L1 0 6582 6539 1 1779 306 0 0 0 chr3 156623740 156623774 -2976009 + (CA)n Simple_repeat Simple_repeat 2 35 0 1 1779 26 0 0 0 chr3 156623891 156623917 -2975866 + AT_rich Low_complexity Low_complexity 1 26 0 1 1779 41702 13 2 6 chr3 156623917 156630311 -2969472 - L1Md_A LINE L1 -2 6580 216 1 222 1456 339 41 12 chr3 156630833 156631516 -2968267 - HERV16-int LTR ERVL -2158 2838 2136 1 1780 273 280 88 0 chr3 156631830 156631955 -2967828 - HERV16-int LTR ERVL -3235 1761 1626 1 1780 225 240 9 143 chr3 156634361 156634404 -2965379 - RCHARR1 DNA MER1_type 0 974 939 1 1780 2678 92 22 38 chr3 156634404 156634775 -2965008 - RLTR8 LTR ERVK 0 365 1 1 1780 225 240 9 143 chr3 156634775 156634843 -2964940 - RCHARR1 DNA MER1_type -36 938 878 1 1780 7595 81 23 0 chr3 156634854 156635839 -2963944 - SRV_MM-int LTR ERVK -8 6159 5152 1 1780 14535 70 55 12 chr3 156635839 156637966 -2961817 - SRV_MM-int LTR ERVK -3556 2611 396 1 1780 2909 55 0 55 chr3 156637966 156638332 -2961451 - ORR1A1 LTR MaLR 0 346 1 1 1780 4642 95 44 31 chr3 156638332 156638528 -2961255 - SRV_MM-int LTR ERVK -5772 395 212 1 1780 1177 60 0 0 chr3 156638528 156638662 -2961121 + B1_Mus2 SINE Alu 5 138 -9 1 1780 236 53 26 0 chr3 156638662 156638700 -2961083 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 1 1780 4642 95 44 31 chr3 156638700 156638888 -2960895 - SRV_MM-int LTR ERVK -5956 211 2 1 1780 2594 104 27 38 chr3 156638888 156639257 -2960526 - RLTR8 LTR ERVK 0 365 1 1 1780 2105 275 65 18 chr3 156639259 156640018 -2959765 - RCHARR1 DNA MER1_type -38 936 143 1 1780 378 0 0 0 chr3 156640274 156640316 -2959467 + (TG)n Simple_repeat Simple_repeat 2 43 0 1 1780 333 0 0 0 chr3 156640845 156640882 -2958901 + (TC)n Simple_repeat Simple_repeat 2 38 0 1 1780 360 0 0 0 chr3 156640882 156640921 -2958862 + (TG)n Simple_repeat Simple_repeat 1 40 0 1 1780 4366 161 172 52 chr3 156640935 156641802 -2957981 + RMER12 LTR ERVK 57 890 -432 1 1780 284 83 21 0 chr3 156641802 156641850 -2957933 + (TG)n Simple_repeat Simple_repeat 1 49 0 1 1780 4366 161 172 52 chr3 156641850 156642108 -2957675 + RMER12 LTR ERVK 891 1318 -4 1 1780 323 23 23 0 chr3 156642267 156642311 -2957472 + (TTTG)n Simple_repeat Simple_repeat 2 46 0 1 1780 201 237 0 0 chr3 156642654 156642713 -2957070 + (CA)n Simple_repeat Simple_repeat 2 60 0 1 1780 262 358 0 0 chr3 156642927 156643008 -2956775 + L2b LINE L2 3294 3374 -1 1 1780 1557 231 94 51 chr3 156646377 156646889 -2952894 - RLTR20C LTR ERVK 0 534 1 1 1780 228 336 89 32 chr3 156647375 156647498 -2952285 - MLT1-int LTR MaLR -51 1320 1191 1 1780 497 294 80 22 chr3 156647580 156647806 -2951977 - Lx8 LINE L1 -359 7114 6876 1 1780 1313 184 9 0 chr3 156648770 156648993 -2950790 - URR1A DNA MER1_type 0 226 2 1 1780 225 336 46 99 chr3 156650670 156650822 -2948961 + LTRIS_Mm LTR ERV1 335 478 -4 1 1780 193 146 42 0 chr3 156651144 156651192 -2948591 + (TA)n Simple_repeat Simple_repeat 2 51 0 1 1780 328 329 134 92 chr3 156651679 156651835 -2947948 - B3A SINE B2 -14 184 20 1 1780 1688 27 16 0 chr3 156651841 156652026 -2947757 - B2_Mm1a SINE B2 -5 188 1 1 1780 198 0 0 0 chr3 156652029 156652051 -2947732 + (TTA)n Simple_repeat Simple_repeat 1 22 0 1 1780 4611 62 2 9 chr3 156652051 156652591 -2947192 - L1_Mus1 LINE L1 -10 6557 6017 1 1780 4877 104 3 7 chr3 156652598 156653316 -2946467 + MusHAL1 LINE L1 1615 2329 -383 1 1780 2667 71 0 0 chr3 156653518 156653857 -2945926 - L1_Mus1 LINE L1 -523 6044 5706 1 1780 4260 78 8 2 chr3 156653857 156654384 -2945399 + L1_Mus1 LINE L1 6038 6567 0 1 1780 350 246 145 58 chr3 156655374 156655512 -2944271 - MLT1J1 LTR MaLR -280 164 15 1 1780 421 259 155 0 chr3 156656213 156656329 -2943454 + RSINE1 SINE B4 3 136 -29 1 1780 423 106 0 0 chr3 156656330 156656396 -2943387 + (CA)n Simple_repeat Simple_repeat 2 67 0 1 1780 336 111 0 0 chr3 156657320 156657374 -2942409 + (TG)n Simple_repeat Simple_repeat 2 55 0 1 1780 882 249 0 6 chr3 156657374 156657540 -2942243 - B3 SINE B2 -51 165 1 1 1780 29 28 0 0 chr3 156657568 156657604 -2942179 + AT_rich Low_complexity Low_complexity 1 36 0 1 1780 232 207 17 17 chr3 156657823 156657882 -2941901 + CT-rich Low_complexity Low_complexity 1 59 0 1 1780 196 278 53 53 chr3 156658670 156658765 -2941018 - L3 LINE CR1 -1135 3354 3260 1 1780 241 317 98 7 chr3 156659751 156659894 -2939889 + L2a LINE L2 3251 3406 -20 1 1780 1278 251 113 22 chr3 156661404 156661766 -2938017 - MTD LTR MaLR -20 399 5 1 1780 341 351 59 36 chr3 156662270 156662522 -2937261 - MLT1G LTR MaLR -296 295 32 1 1780 228 341 45 23 chr3 156663469 156663601 -2936182 - MLT2F LTR ERVL -402 261 127 1 1780 276 30 0 0 chr3 156663791 156663824 -2935959 + (CTG)n Simple_repeat Simple_repeat 3 35 0 1 1780 203 216 0 19 chr3 156666550 156666602 -2933181 + A-rich Low_complexity Low_complexity 6 56 0 1 1780 284 296 83 42 chr3 156666626 156666678 -2933105 - MLT1A0 LTR MaLR -43 322 271 1 1780 2624 144 49 31 chr3 156666678 156667129 -2932654 - RMER6B LTR ERVK 0 461 3 1 1780 280 296 83 42 chr3 156667129 156667196 -2932587 - MLT1A0 LTR MaLR -95 270 198 1 1780 259 45 22 22 chr3 156667246 156667292 -2932491 + (TTTTG)n Simple_repeat Simple_repeat 4 49 0 2 1780 5999 44 1 0 chr3 156667301 156668026 -2931757 - L1Md_F2 LINE L1 -12 6570 5845 2 1780 411 255 112 0 chr3 156669393 156669491 -2930292 + RSINE1 SINE B4 23 131 -34 2 1780 242 29 0 28 chr3 156669519 156669555 -2930228 + (CA)n Simple_repeat Simple_repeat 1 35 0 2 1780 36528 12 0 7 chr3 156669708 156675105 -2924678 + L1Md_A LINE L1 232 5586 -297 2 1780 8659 12 15 0 chr3 156675105 156676086 -2923697 + L1Md_A LINE L1 5587 6582 0 2 1780 238 253 91 97 chr3 156677289 156677464 -2922319 + RLTR21 LTR ERVK 1080 1253 -319 2 1780 249 296 147 9 chr3 156679882 156679998 -2919785 + B4A SINE B4 135 266 -26 2 1780 931 31 16 0 chr3 156680925 156681054 -2918729 + L1Md_T LINE L1 6451 6581 -1 2 1780 189 286 0 0 chr3 156681255 156681311 -2918472 + MIRc SINE MIR 197 252 -16 2 1780 1599 233 76 15 chr3 156682248 156682641 -2917142 - MTD LTR MaLR 0 419 3 2 1780 513 283 0 9 chr3 156683001 156683115 -2916668 + B1F1 SINE Alu 1 113 -36 2 1780 544 250 0 11 chr3 156684284 156684462 -2915321 + GA-rich Low_complexity Low_complexity 2 177 0 2 1780 504 0 0 0 chr3 156684571 156684627 -2915156 + (TG)n Simple_repeat Simple_repeat 2 57 0 2 1780 478 349 20 31 chr3 156685297 156685492 -2914291 + B4A SINE B4 8 200 -92 2 1780 245 235 41 124 chr3 156685568 156685638 -2914145 - L1MDa LINE L1 -3855 2682 2609 2 1780 1691 190 140 5 chr3 156685638 156686009 -2913774 - MTC LTR MaLR 0 421 1 2 1780 245 223 58 138 chr3 156686009 156686197 -2913586 - L1MDa LINE L1 -4025 2608 2438 2 1780 338 284 81 54 chr3 156686337 156686635 -2913148 - L1MDa LINE L1 -4408 2225 1920 2 1780 359 247 119 91 chr3 156687125 156687339 -2912444 + B3A SINE B2 4 198 0 2 1780 194 156 22 0 chr3 156688284 156688329 -2911454 + T-rich Low_complexity Low_complexity 4 49 0 2 1780 991 260 25 131 chr3 156688560 156688958 -2910825 + MTE2a LTR MaLR 6 361 -18 2 1780 447 19 0 0 chr3 156689975 156690027 -2909756 + (TG)n Simple_repeat Simple_repeat 2 53 0 2 1780 295 324 45 9 chr3 156691391 156691503 -2908280 - RMER15 LTR ERVL -16 559 444 2 1780 352 283 49 21 chr3 156691459 156691619 -2908164 - B3 SINE B2 -46 170 1 2 1780 232 163 40 20 chr3 156692634 156692654 -2907129 + MT2B2 LTR ERVL 237 257 -327 2 1780 602 67 35 0 chr3 156692654 156692754 -2907029 + B1_Mm SINE Alu 1 110 -10 2 1780 293 0 0 26 chr3 156692754 156692792 -2906991 + (CAAAA)n Simple_repeat Simple_repeat 2 38 0 2 1780 196 370 117 25 chr3 156693149 156693346 -2906437 - MIR SINE MIR -34 228 14 2 1780 560 225 6 0 chr3 156696044 156696204 -2903579 + (TG)n Simple_repeat Simple_repeat 1 161 0 2 1780 726 171 0 0 chr3 156697317 156697469 -2902314 + (CA)n Simple_repeat Simple_repeat 1 152 0 2 1780 4225 129 12 6 chr3 156697547 156698220 -2901563 - Lx2 LINE L1 0 6997 6321 2 1780 253 143 0 0 chr3 156698223 156698265 -2901518 + Lx2B LINE L1 6311 6352 -648 2 1780 180 0 0 0 chr3 156698466 156698486 -2901297 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 2 1780 32 101 0 0 chr3 156700047 156700156 -2899627 + AT_rich Low_complexity Low_complexity 1 109 0 2 1780 656 257 55 7 chr3 156701930 156702143 -2897640 - MLT-int LTR MaLR -45 1690 1491 2 1780 216 0 0 0 chr3 156702669 156702693 -2897090 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2 1780 349 241 112 35 chr3 156702800 156702916 -2896867 + L2a LINE L2 3302 3426 0 2 1780 409 390 63 34 chr3 156705741 156706009 -2893774 + B4A SINE B4 11 286 -6 2 1780 801 269 181 29 chr3 156708215 156708697 -2891086 - Lx8 LINE L1 0 7473 6919 2 1780 234 62 0 0 chr3 156709126 156709158 -2890625 + (TAAA)n Simple_repeat Simple_repeat 4 35 0 2 1780 226 245 32 11 chr3 156709768 156709863 -2889920 + (CA)n Simple_repeat Simple_repeat 2 98 0 2 1780 1009 48 0 8 chr3 156710172 156710299 -2889484 + B1_Mm SINE Alu 22 147 0 2 1780 21 0 0 0 chr3 156710326 156710347 -2889436 + AT_rich Low_complexity Low_complexity 1 21 0 2 1780 455 207 7 0 chr3 156710417 156710567 -2889216 + (TG)n Simple_repeat Simple_repeat 2 152 0 2 1780 429 36 0 0 chr3 156710571 156710626 -2889157 + (CA)n Simple_repeat Simple_repeat 2 56 0 2 1780 221 357 58 31 chr3 156711424 156711615 -2888168 - L2a LINE L2 -214 3212 3017 2 1780 270 0 0 0 chr3 156712163 156712193 -2887590 + (TAAAA)n Simple_repeat Simple_repeat 1 30 0 2 1780 348 262 238 0 chr3 156713636 156713796 -2885987 + B3A SINE B2 1 198 0 2 1780 470 241 146 0 chr3 156714558 156714716 -2885067 - B3A SINE B2 -17 181 1 2 1780 372 301 222 24 chr3 156715121 156715414 -2884369 + L1MEc LINE L1 36 386 -6014 2 1780 330 274 177 0 chr3 156715523 156715698 -2884085 + L1MEc LINE L1 631 836 -5564 2 1780 3388 28 5 2 chr3 156715856 156716251 -2883532 - MTA_Mm LTR MaLR 0 396 1 2 1780 384 22 0 0 chr3 156716466 156716511 -2883272 + (CA)n Simple_repeat Simple_repeat 1 45 0 2 1780 2710 223 105 51 chr3 156717140 156717970 -2881813 + RMER19B LTR ERVK 1 875 -27 2 1780 197 132 0 26 chr3 156717993 156718032 -2881751 + (TATATG)n Simple_repeat Simple_repeat 3 40 0 2 1780 927 304 64 4 chr3 156718042 156718309 -2881474 - B4A SINE B4 0 292 10 2 1780 243 0 0 0 chr3 156718787 156718814 -2880969 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2 1780 252 234 2 74 chr3 156718828 156718909 -2880874 + B1F SINE Alu 16 92 -28 2 1780 3091 192 122 101 chr3 156718923 156719781 -2880002 - RMER19B LTR ERVK -50 852 1 2 1780 463 334 35 50 chr3 156720075 156720280 -2879503 + B4A SINE B4 21 225 -67 2 1780 272 260 82 0 chr3 156720283 156720356 -2879427 + B1F SINE Alu 68 146 -3 2 1780 311 397 48 34 chr3 156720464 156720610 -2879173 - B1_Mur1 SINE Alu -1 148 1 2 1780 330 348 62 6 chr3 156720658 156720820 -2878963 - L4 LINE RTE -554 1475 1305 2 1780 430 240 116 0 chr3 156721321 156721450 -2878333 - Lx9 LINE L1 -594 7050 6907 2 1780 318 80 0 0 chr3 156721472 156721522 -2878261 + (TC)n Simple_repeat Simple_repeat 1 50 0 2 1780 324 0 0 0 chr3 156721522 156721558 -2878225 + (TG)n Simple_repeat Simple_repeat 1 36 0 2 1780 1604 277 70 9 chr3 156721577 156722106 -2877677 + Lx9 LINE L1 6360 6920 -724 2 1780 375 311 74 31 chr3 156722202 156722474 -2877309 - L1MD LINE L1 -907 5239 4954 2 1780 447 300 217 14 chr3 156722450 156722869 -2876914 - L1MD LINE L1 -2027 4119 3616 2 1780 233 229 29 0 chr3 156723133 156723203 -2876580 - L1M4 LINE L1 -2897 3249 3178 2 1780 405 0 0 0 chr3 156723518 156723563 -2876220 + (TA)n Simple_repeat Simple_repeat 2 46 0 2 1780 23 33 0 0 chr3 156724103 156724133 -2875650 + AT_rich Low_complexity Low_complexity 1 30 0 2 1780 246 310 85 17 chr3 156724335 156724453 -2875330 + L2c LINE L2 3199 3324 -63 2 1780 358 253 92 61 chr3 156725051 156725215 -2874568 - MLT1D LTR MaLR -4 501 333 2 1780 609 14 0 0 chr3 156725490 156725560 -2874223 + (CA)n Simple_repeat Simple_repeat 1 70 0 2 1780 465 296 71 0 chr3 156725972 156726141 -2873642 - MER2 DNA MER2_type -74 271 91 2 1780 1949 310 72 5 chr3 156726148 156726927 -2872856 - Lx8 LINE L1 -397 7076 6246 2 1780 387 0 0 0 chr3 156727037 156727080 -2872703 + (TG)n Simple_repeat Simple_repeat 2 44 0 2 1780 2509 132 17 15 chr3 156727260 156727668 -2872115 - RLTR9E LTR ERVK 0 409 1 2 1780 215 357 62 53 chr3 156727803 156728028 -2871755 - MIRb SINE MIR -6 262 36 2 1780 352 321 9 44 chr3 156728341 156728455 -2871328 - B3 SINE B2 -80 136 27 2 1780 312 83 0 0 chr3 156728463 156728511 -2871272 + (TTCA)n Simple_repeat Simple_repeat 2 49 0 2 1780 183 246 27 80 chr3 156728820 156728895 -2870888 - L2c LINE L2 -2 3385 3315 2 1780 225 231 0 71 chr3 156729863 156729933 -2869850 + RMER15 LTR ERVL 403 467 -108 2 1780 2545 110 36 19 chr3 156730324 156730741 -2869042 - L1_Mus4 LINE L1 0 6636 6213 2 1780 408 88 0 0 chr3 156732359 156732416 -2867367 + (CA)n Simple_repeat Simple_repeat 1 57 0 2 1780 3156 115 42 4 chr3 156733148 156733647 -2866136 - Lx2A1 LINE L1 0 7008 6491 2 1780 233 209 15 0 chr3 156734086 156734153 -2865630 + GA-rich Low_complexity Low_complexity 1 68 0 2 1780 347 264 77 30 chr3 156734368 156734545 -2865238 - L1_Rod LINE L1 -237 5640 5429 2 1780 191 170 0 21 chr3 156734983 156735031 -2864752 + (CA)n Simple_repeat Simple_repeat 2 48 0 2 1780 1187 210 38 24 chr3 156735936 156736229 -2863554 - Lx6 LINE L1 -26 7434 7138 2 1780 25 0 0 0 chr3 156737302 156737327 -2862456 + AT_rich Low_complexity Low_complexity 1 25 0 2 1780 201 173 0 55 chr3 156739632 156739687 -2860096 + (TTTG)n Simple_repeat Simple_repeat 1 52 0 2 1780 21 57 0 0 chr3 156742046 156742081 -2857702 + AT_rich Low_complexity Low_complexity 1 35 0 2 1780 1151 64 5 99 chr3 156742082 156742274 -2857509 - L1_Mus2 LINE L1 -1 6565 6392 2 1780 236 329 14 0 chr3 156745376 156745446 -2854337 + MLT1A1 LTR MaLR 51 121 -287 2 1780 650 293 11 17 chr3 156745779 156745956 -2853827 + ID_B1 SINE B4 42 217 -7 2 1780 280 220 0 0 chr3 156750086 156750145 -2849638 - Lx9 LINE L1 -370 7274 7216 2 1780 995 102 6 0 chr3 156750996 156751173 -2848610 + (TAGA)n Simple_repeat Simple_repeat 3 180 0 2 1780 243 0 0 0 chr3 156754395 156754422 -2845361 + (TA)n Simple_repeat Simple_repeat 2 28 0 2 1780 21 36 0 0 chr3 156754455 156754483 -2845300 + AT_rich Low_complexity Low_complexity 1 28 0 2 1780 288 0 0 0 chr3 156755172 156755204 -2844579 + (CA)n Simple_repeat Simple_repeat 1 32 0 2 1780 1690 155 80 67 chr3 156755926 156756115 -2843668 - ORR1C2 LTR MaLR -1 383 191 2 1780 1395 34 0 0 chr3 156756115 156756292 -2843491 + (GA)n Simple_repeat Simple_repeat 2 178 0 2 1780 1690 155 80 67 chr3 156756292 156756475 -2843308 - ORR1C2 LTR MaLR -194 190 7 2 1780 662 303 50 22 chr3 156757064 156757341 -2842442 + B4A SINE B4 2 286 -6 2 1780 369 297 75 57 chr3 156757428 156757710 -2842073 - RMER12 LTR ERVK -300 1022 736 3 1780 228 264 0 0 chr3 156757710 156757763 -2842020 + (CATA)n Simple_repeat Simple_repeat 2 54 0 3 1780 35 0 0 0 chr3 156761239 156761274 -2838509 + AT_rich Low_complexity Low_complexity 1 35 0 3 1781 5183 67 12 1 chr3 156762341 156763015 -2836768 + L1Md_F2 LINE L1 5900 6580 -2 3 1781 527 272 63 18 chr3 156763150 156763371 -2836412 - Lx8 LINE L1 -127 7346 7116 3 1781 324 335 80 11 chr3 156764503 156764690 -2835093 - L1MC1 LINE L1 -310 6023 5824 3 1781 241 267 174 0 chr3 156765186 156765263 -2834520 - ID2 SINE ID -60 92 4 3 1781 2371 268 120 27 chr3 156765282 156766382 -2833401 - MMAR1 DNA Mariner 0 1286 1 3 1781 315 327 40 0 chr3 156766937 156767038 -2832745 - PB1D10 SINE Alu -6 111 7 3 1781 1777 146 41 107 chr3 156767522 156767914 -2831869 - ORR1B1 LTR MaLR -10 384 19 3 1781 212 326 56 0 chr3 156768330 156768419 -2831364 - L2a LINE L2 -6 3420 3327 3 1781 320 356 123 0 chr3 156769354 156769500 -2830283 + B4A SINE B4 6 169 -123 3 1781 853 104 90 0 chr3 156769804 156769938 -2829845 + B1_Mus1 SINE Alu 2 147 -1 3 1781 24 32 0 0 chr3 156770670 156770701 -2829082 + AT_rich Low_complexity Low_complexity 1 31 0 3 1781 288 307 0 13 chr3 156770950 156771026 -2828757 + ID SINE ID 1 75 -149 3 1781 224 316 70 0 chr3 156771038 156771152 -2828631 + B1_Mur4 SINE Alu 29 150 0 3 1781 274 276 0 0 chr3 156771408 156771466 -2828317 + MIR SINE MIR 91 148 -60 3 1781 180 0 0 0 chr3 156771668 156771688 -2828095 + (T)n Simple_repeat Simple_repeat 1 20 0 3 1781 579 306 16 16 chr3 156772033 156772216 -2827567 - B4 SINE B4 -3 289 107 3 1781 489 304 30 48 chr3 156772360 156772396 -2827387 - RSINE1 SINE B4 0 165 126 3 1781 558 0 0 0 chr3 156772396 156772458 -2827325 + (CTGTG)n Simple_repeat Simple_repeat 3 64 0 3 1781 489 304 30 48 chr3 156772458 156772587 -2827196 - RSINE1 SINE B4 -40 125 3 3 1781 35 78 0 0 chr3 156773368 156773445 -2826338 + AT_rich Low_complexity Low_complexity 1 77 0 3 1781 258 106 0 0 chr3 156773991 156774038 -2825745 + (TC)n Simple_repeat Simple_repeat 2 48 0 3 1781 219 88 0 0 chr3 156774038 156774072 -2825711 + (CA)n Simple_repeat Simple_repeat 1 34 0 3 1781 7564 58 8 5 chr3 156774133 156775096 -2824687 + L1Md_F2 LINE L1 5614 6579 -3 3 1781 543 53 0 0 chr3 156775555 156775630 -2824153 + (GA)n Simple_repeat Simple_repeat 2 76 0 3 1781 240 149 0 0 chr3 156776578 156776625 -2823158 + (GGA)n Simple_repeat Simple_repeat 2 48 0 3 1781 198 302 82 86 chr3 156776719 156777034 -2822749 - L2a LINE L2 -154 3272 2959 3 1781 318 50 0 0 chr3 156778846 156778886 -2820897 + (TG)n Simple_repeat Simple_repeat 1 40 0 3 1781 394 290 0 21 chr3 156778891 156779181 -2820602 + (TATG)n Simple_repeat Simple_repeat 1 283 0 3 1781 240 259 0 0 chr3 156779194 156779248 -2820535 + (TG)n Simple_repeat Simple_repeat 1 54 0 3 1781 8178 42 0 0 chr3 156780188 156781318 -2818465 - L1Md_T LINE L1 0 6582 5453 3 1781 5415 21 2 0 chr3 156781314 156781933 -2817850 + L1Md_T LINE L1 4888 5507 -376 3 1781 189 0 0 0 chr3 156782905 156782926 -2816857 + (TG)n Simple_repeat Simple_repeat 1 21 0 3 1781 243 0 0 0 chr3 156783214 156783241 -2816542 + (T)n Simple_repeat Simple_repeat 1 27 0 3 1781 242 295 216 0 chr3 156783677 156783816 -2815967 + MIR SINE MIR 84 252 -10 3 1781 1131 224 168 13 chr3 156784043 156784186 -2815597 + ORR1D2 LTR MaLR 1 175 -195 3 1781 1389 52 0 0 chr3 156784186 156784398 -2815385 + (TC)n Simple_repeat Simple_repeat 1 212 0 3 1781 1131 224 168 13 chr3 156784398 156784567 -2815216 + ORR1D2 LTR MaLR 176 363 -7 3 1781 2746 99 11 76 chr3 156785279 156785809 -2813974 - Lx2A1 LINE L1 -1012 5996 5498 3 1781 6363 166 11 11 chr3 156785809 156786851 -2812932 + Lx2 LINE L1 5956 6997 0 3 1781 543 255 91 7 chr3 156786873 156787027 -2812756 + RMER20B LTR ERVK 226 392 -235 3 1781 5975 86 27 1 chr3 156787851 156788663 -2811120 + L1_Mus1 LINE L1 5734 6566 -1 3 1781 8671 27 0 0 chr3 156790212 156791355 -2808428 - L1Md_A LINE L1 -2 6580 5438 3 1781 1110 289 109 13 chr3 156793939 156794399 -2805384 - Lx8 LINE L1 -179 7294 6791 3 1781 853 74 0 15 chr3 156795273 156795410 -2804373 + (TC)n Simple_repeat Simple_repeat 1 135 0 3 1781 489 280 0 99 chr3 156795519 156795701 -2804082 + RSINE1 SINE B4 2 165 0 3 1781 225 83 0 0 chr3 156795707 156795743 -2804040 + (TGAA)n Simple_repeat Simple_repeat 1 36 0 3 1781 2364 117 12 9 chr3 156796404 156796732 -2803051 - ORR1A4 LTR MaLR 0 329 1 3 1781 23 54 0 0 chr3 156796733 156796770 -2803013 + AT_rich Low_complexity Low_complexity 1 37 0 3 1781 618 131 0 0 chr3 156797325 156797424 -2802359 + (CA)n Simple_repeat Simple_repeat 1 99 0 3 1781 396 283 124 31 chr3 156797510 156797703 -2802080 + B3 SINE B2 1 211 -5 3 1781 35 24 0 0 chr3 156798237 156798279 -2801504 + AT_rich Low_complexity Low_complexity 1 42 0 3 1781 495 220 33 11 chr3 156798461 156798553 -2801230 + RSINE1 SINE B4 39 132 -33 3 1781 453 81 0 0 chr3 156798607 156798669 -2801114 + (CA)n Simple_repeat Simple_repeat 2 63 0 3 1781 252 0 0 0 chr3 156799794 156799822 -2799961 + (TG)n Simple_repeat Simple_repeat 2 29 0 3 1781 1429 240 50 14 chr3 156800413 156800903 -2798880 + RMER13B LTR ERVK 1 908 0 3 1781 201 74 0 0 chr3 156801135 156801162 -2798621 + (TTG)n Simple_repeat Simple_repeat 2 28 0 3 1781 421 294 51 46 chr3 156801648 156801844 -2797939 + MTEa LTR MaLR 181 377 -2 3 1781 306 219 69 58 chr3 156802625 156802712 -2797071 - Lx9 LINE L1 -483 7161 7074 3 1781 254 352 72 0 chr3 156803194 156803333 -2796450 - MIRb SINE MIR -16 252 104 3 1781 213 312 0 0 chr3 156803852 156803916 -2795867 + (CA)n Simple_repeat Simple_repeat 1 64 0 3 1781 198 0 0 0 chr3 156805654 156805676 -2794107 + (TTTG)n Simple_repeat Simple_repeat 3 24 0 3 1781 265 316 84 37 chr3 156807604 156807818 -2791965 + L2a LINE L2 2605 2828 -591 3 1781 185 299 97 52 chr3 156807894 156808049 -2791734 + L2a LINE L2 2993 3154 -272 3 1781 213 231 29 71 chr3 156808133 156808203 -2791580 - ID4 SINE ID -7 76 10 3 1781 279 228 0 0 chr3 156808340 156808397 -2791386 + L2a LINE L2 3365 3421 -5 3 1781 287 320 109 11 chr3 156808598 156808781 -2791002 + MIRb SINE MIR 60 260 -8 3 1781 273 98 0 0 chr3 156809031 156809072 -2790711 + (TG)n Simple_repeat Simple_repeat 1 41 0 3 1781 387 0 0 0 chr3 156809072 156809114 -2790669 + (GA)n Simple_repeat Simple_repeat 1 43 0 3 1781 386 204 0 10 chr3 156810313 156810408 -2789375 + (TG)n Simple_repeat Simple_repeat 2 96 0 3 1781 552 56 0 0 chr3 156810408 156810480 -2789303 + (GA)n Simple_repeat Simple_repeat 1 72 0 3 1781 386 204 0 10 chr3 156810480 156810488 -2789295 + (TG)n Simple_repeat Simple_repeat 2 9 0 3 1781 292 365 80 13 chr3 156810582 156810732 -2789051 - B4A SINE B4 -59 233 74 3 1781 237 380 77 21 chr3 156812243 156812477 -2787306 - LTR86A1 LTR ERVL -1 512 266 3 1781 266 279 7 0 chr3 156812623 156812680 -2787103 + (CA)n Simple_repeat Simple_repeat 1 104 -36 3 1781 234 226 31 31 chr3 156812680 156812744 -2787039 + (CATA)n Simple_repeat Simple_repeat 4 67 0 3 1781 266 279 7 0 chr3 156812744 156812762 -2787021 + (CA)n Simple_repeat Simple_repeat 105 140 0 3 1781 307 250 12 0 chr3 156813050 156813214 -2786569 + (CA)n Simple_repeat Simple_repeat 2 167 0 3 1781 1026 301 31 43 chr3 156813217 156813540 -2786243 - MLT1F LTR MaLR -229 319 1 3 1781 474 18 0 0 chr3 156813848 156813903 -2785880 + (TA)n Simple_repeat Simple_repeat 2 56 0 3 1781 451 204 134 16 chr3 156814597 156814746 -2785037 - ORR1D1 LTR MaLR -14 405 179 3 1781 361 157 0 43 chr3 156815307 156815400 -2784383 + (CA)n Simple_repeat Simple_repeat 1 89 0 3 1781 372 119 0 0 chr3 156816894 156816953 -2782830 + (TTCA)n Simple_repeat Simple_repeat 3 61 0 3 1781 785 201 22 0 chr3 156816969 156817108 -2782675 - B1_Mur4 SINE Alu -8 142 1 3 1781 231 103 0 0 chr3 156817120 156817159 -2782624 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 3 1781 389 398 0 0 chr3 156817168 156817286 -2782497 - B4 SINE B4 -78 214 97 3 1781 300 278 99 63 chr3 156819345 156819487 -2780296 + MIRb SINE MIR 43 189 -79 3 1781 710 118 41 0 chr3 156820369 156820539 -2779244 + (TCTA)n Simple_repeat Simple_repeat 4 180 0 3 1781 450 318 76 41 chr3 156820540 156820737 -2779046 - ID_B1 SINE B4 -18 206 3 3 1781 21 0 0 0 chr3 156820755 156820776 -2779007 + AT_rich Low_complexity Low_complexity 1 21 0 3 1781 576 102 65 18 chr3 156825586 156825756 -2774027 + (TCTA)n Simple_repeat Simple_repeat 3 180 0 3 1781 274 324 13 13 chr3 156825968 156826043 -2773740 - ID4 SINE ID -3 80 6 3 1781 284 345 72 15 chr3 156826315 156826554 -2773229 - MIR SINE MIR -11 251 3 3 1781 292 264 14 0 chr3 156826825 156826897 -2772886 + G-rich Low_complexity Low_complexity 4 76 0 3 1781 423 0 0 0 chr3 156826900 156826947 -2772836 + (TG)n Simple_repeat Simple_repeat 2 48 0 3 1781 184 140 330 55 chr3 156828477 156828568 -2771215 - L2 LINE L2 -946 2473 2358 3 1781 258 105 0 0 chr3 156829275 156829313 -2770470 + (GA)n Simple_repeat Simple_repeat 2 39 0 3 1781 1895 210 90 12 chr3 156831280 156831704 -2768079 + Lx5 LINE L1 6594 7050 0 3 1781 208 53 53 0 chr3 156831704 156831742 -2768041 + (TAAA)n Simple_repeat Simple_repeat 1 40 0 3 1781 779 249 79 0 chr3 156831875 156832064 -2767719 + B3 SINE B2 1 204 -12 3 1781 648 36 0 0 chr3 156832389 156832472 -2767311 + (TC)n Simple_repeat Simple_repeat 1 83 0 3 1781 216 0 0 0 chr3 156832720 156832744 -2767039 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 3 1781 239 246 0 0 chr3 156832819 156832876 -2766907 + B4A SINE B4 231 287 -5 3 1781 23 0 0 0 chr3 156832941 156832964 -2766819 + AT_rich Low_complexity Low_complexity 1 23 0 3 1781 521 292 48 30 chr3 156835213 156835379 -2764404 + B3A SINE B2 2 170 -28 4 1781 402 39 0 0 chr3 156835385 156835437 -2764346 + (CA)n Simple_repeat Simple_repeat 1 52 0 4 1781 213 39 0 0 chr3 156837286 156837312 -2762471 + (CTTA)n Simple_repeat Simple_repeat 2 27 0 4 1781 1732 241 44 75 chr3 156837314 156837876 -2761907 - RLTR31_Mur LTR ERVK -3 550 1 4 1781 243 0 0 0 chr3 156837882 156837909 -2761874 + (TTAG)n Simple_repeat Simple_repeat 2 28 0 4 1781 363 254 116 58 chr3 156837910 156838031 -2761752 - RSINE1 SINE B4 -2 163 36 4 1781 536 278 192 14 chr3 156838202 156838410 -2761373 + B4A SINE B4 32 276 -16 4 1781 203 119 48 0 chr3 156838433 156838475 -2761308 + (CA)n Simple_repeat Simple_repeat 1 44 0 4 1781 424 268 112 5 chr3 156839493 156839699 -2760084 - L1M2 LINE L1 -717 5574 5347 4 1781 508 250 69 10 chr3 156839868 156840070 -2759713 - L1M2 LINE L1 -867 5276 5063 4 1781 270 318 26 60 chr3 156842582 156842699 -2757084 - MER44D DNA MER2_type -585 120 8 4 1781 201 306 87 35 chr3 156843657 156843772 -2756011 - MIR3 SINE MIR -49 159 39 4 1781 380 299 37 43 chr3 156843832 156843993 -2755790 - LTR40b LTR ERVL -12 450 291 4 1781 264 275 60 60 chr3 156846980 156847052 -2752731 - RMER12 LTR ERVK -488 834 762 4 1781 2786 78 21 5 chr3 156847052 156847437 -2752346 - L1_Mus3 LINE L1 -6 6632 6242 4 1781 264 275 60 60 chr3 156847437 156847480 -2752303 - RMER12 LTR ERVK -561 761 719 4 1781 487 284 19 2 chr3 156847898 156848029 -2751754 + B4 SINE B4 5 137 -155 4 1781 956 79 0 7 chr3 156848125 156848278 -2751505 + (CA)n Simple_repeat Simple_repeat 2 153 0 4 1781 23 33 0 0 chr3 156849330 156849360 -2750423 + AT_rich Low_complexity Low_complexity 1 30 0 4 1781 245 330 32 21 chr3 156849883 156849976 -2749807 - MLT1A0 LTR MaLR -144 230 137 4 1781 354 298 30 61 chr3 156850022 156850154 -2749629 - MLT1A0 LTR MaLR -225 140 13 4 1781 280 286 84 14 chr3 156851640 156851782 -2748001 - MLT1C LTR MaLR -118 349 198 4 1781 180 200 0 0 chr3 156852348 156852388 -2747395 + T-rich Low_complexity Low_complexity 1 40 0 4 1781 273 284 93 13 chr3 156852710 156852785 -2746998 - RSINE1 SINE B4 -1 164 84 4 1781 343 292 26 70 chr3 156852961 156853075 -2746708 + B3 SINE B2 102 210 -6 4 1781 266 314 0 28 chr3 156853935 156854043 -2745740 + (CATA)n Simple_repeat Simple_repeat 2 106 0 4 1781 215 93 0 23 chr3 156854120 156854164 -2745619 + (TTTTTG)n Simple_repeat Simple_repeat 6 48 0 4 1781 26 0 0 0 chr3 156855002 156855028 -2744755 + AT_rich Low_complexity Low_complexity 1 26 0 4 1781 387 41 0 0 chr3 156855744 156855793 -2743990 + (CATA)n Simple_repeat Simple_repeat 2 50 0 4 1781 235 214 9 72 chr3 156855794 156855905 -2743878 + Lx9 LINE L1 7520 7623 -21 4 1781 423 322 102 0 chr3 156855934 156856052 -2743731 + RSINE1 SINE B4 3 132 -33 4 1781 222 292 69 0 chr3 156856200 156856272 -2743511 + ID SINE ID 8 84 -140 4 1781 594 265 146 29 chr3 156857996 156858167 -2741616 - B3 SINE B2 -25 191 1 4 1781 315 0 0 0 chr3 156858321 156858356 -2741427 + (TG)n Simple_repeat Simple_repeat 2 36 0 4 1781 486 0 0 0 chr3 156858548 156858602 -2741181 + (TC)n Simple_repeat Simple_repeat 1 54 0 4 1781 2966 38 0 67 chr3 156858718 156859109 -2740674 - RLTR10B2 LTR ERVK 0 365 1 4 1781 322 115 33 0 chr3 156859761 156859822 -2739961 + (TA)n Simple_repeat Simple_repeat 1 63 0 4 1781 309 284 27 0 chr3 156860309 156860383 -2739400 - ID4_ SINE ID -7 76 1 4 1781 23 33 0 0 chr3 156861902 156861932 -2737851 + AT_rich Low_complexity Low_complexity 1 30 0 4 1781 285 290 19 63 chr3 156864132 156864261 -2735522 + B4A SINE B4 147 277 -15 4 1781 249 182 50 10 chr3 156864715 156864815 -2734968 + (TG)n Simple_repeat Simple_repeat 1 104 0 4 1781 309 189 48 24 chr3 156864834 156865002 -2734781 + (TG)n Simple_repeat Simple_repeat 1 172 0 4 1781 589 156 48 11 chr3 156865033 156865312 -2734471 + (TG)n Simple_repeat Simple_repeat 1 289 0 4 1781 294 236 46 20 chr3 156865330 156865440 -2734343 - B3A SINE B2 -39 156 42 4 1781 585 251 125 28 chr3 156865502 156865792 -2733991 - MTEa LTR MaLR -2 377 9 4 1781 645 345 91 4 chr3 156867123 156867388 -2732395 - B4A SINE B4 -4 288 1 4 1781 393 22 0 0 chr3 156867574 156867620 -2732163 + (TG)n Simple_repeat Simple_repeat 2 47 0 4 1781 751 316 83 4 chr3 156867663 156867917 -2731866 - B4A SINE B4 -4 288 15 4 1781 22 56 0 0 chr3 156869479 156869515 -2730268 + AT_rich Low_complexity Low_complexity 1 36 0 4 1781 24 0 0 0 chr3 156870040 156870064 -2729719 + AT_rich Low_complexity Low_complexity 1 24 0 4 1781 504 0 0 0 chr3 156870134 156870190 -2729593 + (TC)n Simple_repeat Simple_repeat 1 56 0 4 1781 276 30 0 0 chr3 156870190 156870222 -2729561 + (CA)n Simple_repeat Simple_repeat 1 33 0 4 1781 229 268 68 68 chr3 156871498 156871586 -2728197 - MTEb LTR MaLR -19 360 273 4 1781 820 299 132 11 chr3 156871658 156871939 -2727844 + MTE2b LTR MaLR 1 315 -64 4 1781 1457 177 105 12 chr3 156874244 156874576 -2725207 + RMER1B Other Other 44 406 -660 4 1781 2298 252 125 21 chr3 156874555 156875958 -2723825 + RMER1A Other Other 1 1031 -35 4 1781 329 243 27 0 chr3 156876048 156876122 -2723661 - B4 SINE B4 -2 290 215 4 1781 423 52 0 0 chr3 156876136 156876194 -2723589 + (TG)n Simple_repeat Simple_repeat 1 58 0 4 1781 486 0 0 0 chr3 156876194 156876247 -2723536 + (GA)n Simple_repeat Simple_repeat 1 54 0 4 1781 4935 225 72 24 chr3 156876247 156877724 -2722059 - Lx9 LINE L1 -16 7628 6082 4 1781 432 86 0 0 chr3 156878362 156878432 -2721351 + (TG)n Simple_repeat Simple_repeat 2 71 0 4 1781 521 319 51 6 chr3 156878547 156878705 -2721078 + MIRb SINE MIR 92 256 -12 4 1781 360 0 0 0 chr3 156879418 156879458 -2720325 + (TG)n Simple_repeat Simple_repeat 2 41 0 4 1781 368 318 94 94 chr3 156879728 156880016 -2719767 + B4A SINE B4 5 292 0 4 1781 338 259 12 24 chr3 156880095 156880261 -2719522 + (CATA)n Simple_repeat Simple_repeat 2 165 0 4 1781 237 227 0 0 chr3 156880266 156880310 -2719473 + (CA)n Simple_repeat Simple_repeat 1 44 0 4 1781 180 0 0 0 chr3 156881059 156881079 -2718704 + (CA)n Simple_repeat Simple_repeat 2 21 0 4 1781 414 0 0 0 chr3 156881855 156881901 -2717882 + (GA)n Simple_repeat Simple_repeat 1 46 0 4 1781 208 254 41 27 chr3 156882886 156882959 -2716824 - MIRb SINE MIR -77 191 118 4 1781 205 175 0 0 chr3 156883141 156883181 -2716602 + T-rich Low_complexity Low_complexity 4 43 0 4 1781 380 104 15 0 chr3 156883574 156883641 -2716142 + (CA)n Simple_repeat Simple_repeat 1 68 0 4 1781 187 161 18 18 chr3 156883670 156883727 -2716056 + (CATA)n Simple_repeat Simple_repeat 4 60 0 4 1781 221 83 28 0 chr3 156883740 156883776 -2716007 + (CA)n Simple_repeat Simple_repeat 2 38 0 4 1781 1212 275 39 51 chr3 156884323 156884718 -2715065 - MTE2a LTR MaLR 0 419 19 4 1781 271 219 21 0 chr3 156890258 156890354 -2709429 + (TGGA)n Simple_repeat Simple_repeat 4 101 0 4 1781 231 190 52 0 chr3 156890378 156890436 -2709347 + (TAGA)n Simple_repeat Simple_repeat 2 62 0 4 1781 198 234 28 0 chr3 156890447 156890554 -2709229 + (TGGA)n Simple_repeat Simple_repeat 3 112 0 4 1781 315 192 61 49 chr3 156892663 156892745 -2707038 + Charlie12 DNA MER1_type 2791 2873 0 4 1781 360 317 8 16 chr3 156892840 156892965 -2706818 - MLT1D LTR MaLR 0 627 396 4 1782 291 203 0 0 chr3 156893274 156893343 -2706440 + (CA)n Simple_repeat Simple_repeat 1 69 0 4 1782 24 32 0 0 chr3 156894213 156894244 -2705539 + AT_rich Low_complexity Low_complexity 1 31 0 4 1782 721 249 58 0 chr3 156894919 156895092 -2704691 + ORR1D1 LTR MaLR 1 183 -191 4 1782 470 31 16 0 chr3 156895173 156895237 -2704546 + (TC)n Simple_repeat Simple_repeat 1 65 0 4 1782 1001 171 20 15 chr3 156895245 156895441 -2704342 + ORR1D1 LTR MaLR 178 374 0 4 1782 208 250 94 0 chr3 156896339 156896403 -2703380 + MIR3 SINE MIR 128 197 -11 4 1782 188 319 58 41 chr3 156897623 156897744 -2702039 - MIRb SINE MIR -10 258 136 4 1782 435 38 0 0 chr3 156897864 156897917 -2701866 + (CA)n Simple_repeat Simple_repeat 2 54 0 4 1782 701 81 29 29 chr3 156897918 156898058 -2701725 + (CAGAGA)n Simple_repeat Simple_repeat 2 141 0 4 1782 874 84 0 0 chr3 156900188 156900295 -2699488 - U6 snRNA snRNA 0 107 1 4 1782 279 322 17 25 chr3 156900825 156900943 -2698840 - B4A SINE B4 -174 118 2 4 1782 6743 73 16 0 chr3 156901549 156902624 -2697159 - L1_Mus2 LINE L1 -5 6633 5448 4 1782 884 307 37 16 chr3 156902642 156902884 -2696899 + B4A SINE B4 16 262 -30 4 1782 252 0 0 0 chr3 156902885 156902913 -2696870 + (CA)n Simple_repeat Simple_repeat 1 28 0 4 1782 228 222 19 0 chr3 156902917 156902971 -2696812 + GA-rich Low_complexity Low_complexity 1 55 0 4 1782 25 0 0 0 chr3 156904454 156904479 -2695304 + AT_rich Low_complexity Low_complexity 1 25 0 4 1782 714 34 0 0 chr3 156904666 156904755 -2695028 + (TC)n Simple_repeat Simple_repeat 2 90 0 4 1782 492 18 0 0 chr3 156904755 156904811 -2694972 + (TG)n Simple_repeat Simple_repeat 2 58 0 4 1782 188 250 167 0 chr3 156906178 156906250 -2693533 + L3 LINE CR1 1020 1103 -3386 4 1782 1048 269 36 8 chr3 156906330 156906581 -2693202 - MTEa LTR MaLR -117 262 5 4 1782 320 236 0 68 chr3 156907510 156907591 -2692192 + (TATATG)n Simple_repeat Simple_repeat 3 79 0 4 1782 2084 137 140 14 chr3 156907591 156908013 -2691770 - IAPLTR2_Mm LTR ERVK 0 475 1 4 1782 320 236 0 68 chr3 156908013 156908063 -2691720 + (TATATG)n Simple_repeat Simple_repeat 5 50 0 4 1782 364 270 11 11 chr3 156908217 156908307 -2691476 + B4A SINE B4 1 90 -202 4 1782 2248 182 18 0 chr3 156909434 156909819 -2689964 - ORR1B1 LTR MaLR -2 392 1 4 1782 3704 25 0 0 chr3 156910527 156910921 -2688862 - MTA_Mm LTR MaLR 0 396 3 4 1782 362 270 22 0 chr3 156911250 156911339 -2688444 + PB1D10 SINE Alu 26 116 -1 4 1782 396 0 0 0 chr3 156911688 156911732 -2688051 + (CA)n Simple_repeat Simple_repeat 1 44 0 5 1782 396 0 0 0 chr3 156911732 156911775 -2688008 + (GA)n Simple_repeat Simple_repeat 2 45 0 5 1782 401 340 82 32 chr3 156911779 156912119 -2687664 + L1MC LINE L1 5383 5739 -594 5 1782 272 261 0 80 chr3 156912427 156912527 -2687256 - RMER12 LTR ERVK -483 839 748 5 1782 618 82 0 0 chr3 156913598 156913683 -2686100 + (GAGAA)n Simple_repeat Simple_repeat 5 89 0 5 1782 1562 0 6 0 chr3 156913683 156913861 -2685922 + (GGGAGA)n Simple_repeat Simple_repeat 2 180 0 5 1782 1057 116 6 6 chr3 156913886 156914060 -2685723 + (GAGAA)n Simple_repeat Simple_repeat 5 178 0 5 1782 195 324 40 0 chr3 156914593 156914667 -2685116 + L2 LINE L2 2829 2905 -514 5 1782 863 239 67 7 chr3 156915502 156915729 -2684054 - ID_B1 SINE B4 -31 261 14 5 1782 316 211 56 0 chr3 156916169 156916240 -2683543 - PB1D9 SINE Alu 0 120 46 5 1782 349 331 98 15 chr3 156916951 156917083 -2682700 + ID_B1 SINE B4 82 224 0 5 1782 711 214 29 0 chr3 156917084 156917224 -2682559 + B1_Mur1 SINE Alu 1 144 -5 5 1782 216 0 0 0 chr3 156919348 156919372 -2680411 + (TTTTTA)n Simple_repeat Simple_repeat 5 28 0 5 1782 236 337 75 19 chr3 156919537 156919642 -2680141 - MER68 LTR ERVL -4 559 449 5 1782 705 279 17 6 chr3 156919642 156919815 -2679968 + B3A SINE B2 2 176 -22 5 1782 1864 173 84 41 chr3 156920443 156920811 -2678972 - ORR1C2 LTR MaLR 0 384 1 5 1782 4602 222 138 31 chr3 156920811 156922048 -2677735 - ORR1C2-int LTR MaLR 0 1370 2 5 1782 816 248 53 82 chr3 156922049 156922458 -2677325 - ORR1C2 LTR MaLR 0 384 1 5 1782 207 52 16 79 chr3 156922481 156922544 -2677239 + (TTTTTA)n Simple_repeat Simple_repeat 2 60 0 5 1782 1176 75 7 7 chr3 156922548 156922696 -2677087 - B1_Mus1 SINE Alu 0 148 1 5 1782 2057 165 8 55 chr3 156922889 156923274 -2676509 + ORR1B2 LTR MaLR 1 367 0 5 1782 30667 96 27 8 chr3 156923839 156929878 -2669905 - L1_Mus2 LINE L1 0 6566 410 5 1782 324 256 11 53 chr3 156930171 156930266 -2669517 - RSINE1 SINE B4 -22 143 53 5 1782 5162 69 0 29 chr3 156932733 156933393 -2666390 + L1Md_F2 LINE L1 5942 6582 0 5 1782 441 0 0 0 chr3 156933798 156933847 -2665936 + (CA)n Simple_repeat Simple_repeat 1 49 0 5 1782 345 336 62 0 chr3 156933903 156934016 -2665767 + ID_B1 SINE B4 39 158 -66 5 1782 303 132 0 50 chr3 156934086 156934166 -2665617 + GA-rich Low_complexity Low_complexity 3 78 0 5 1782 396 316 25 8 chr3 156935714 156935832 -2663951 + RSINE1 SINE B4 6 125 -40 5 1782 1929 176 87 8 chr3 156936031 156936387 -2663396 - ORR1C2 LTR MaLR 0 384 1 5 1782 1264 98 16 16 chr3 156936972 156937158 -2662625 + B2_Mm2 SINE B2 8 193 -2 5 1782 25 0 0 0 chr3 156937462 156937487 -2662296 + AT_rich Low_complexity Low_complexity 1 25 0 5 1782 579 268 65 87 chr3 156938431 156938615 -2661168 + B3A SINE B2 1 180 -15 5 1782 2177 333 80 44 chr3 156939584 156939765 -2660018 - Lx8 LINE L1 -29 7444 7254 5 1782 7486 29 0 4 chr3 156939765 156940587 -2659196 - L1Md_F2 LINE L1 -12 6570 5752 5 1782 2177 333 80 44 chr3 156940587 156941604 -2658179 - Lx8 LINE L1 -220 7253 6198 5 1782 270 0 0 0 chr3 156941604 156941634 -2658149 + (TG)n Simple_repeat Simple_repeat 2 31 0 5 1782 2177 333 80 44 chr3 156941634 156941667 -2658116 - Lx8 LINE L1 -1276 6197 6168 5 1782 234 0 0 0 chr3 156943087 156943113 -2656670 + (T)n Simple_repeat Simple_repeat 1 26 0 5 1782 240 303 13 0 chr3 156943449 156943525 -2656258 + B1F SINE Alu 68 144 -5 5 1782 1023 173 0 0 chr3 156945129 156945308 -2654475 + RMER1C Other Other 1038 1216 -126 5 1782 407 237 7 0 chr3 156945308 156945443 -2654340 + CT-rich Low_complexity Low_complexity 1 136 0 5 1782 427 226 8 3 chr3 156945446 156945551 -2654232 + RMER1C Other Other 1229 1318 -24 5 1782 308 259 35 12 chr3 156946708 156946794 -2652989 - MER58B DNA MER1_type -8 333 246 5 1782 913 241 26 18 chr3 156946865 156947093 -2652690 + MER58B DNA MER1_type 38 267 -74 5 1782 246 207 52 0 chr3 156948175 156948233 -2651550 - MER5A1 DNA MER1_type -3 163 103 5 1782 3198 78 2 9 chr3 156948245 156948685 -2651098 - L1_Mus2 LINE L1 0 6566 6130 5 1782 595 97 11 0 chr3 156948685 156948778 -2651005 + L1_Mus2 LINE L1 5942 6035 -531 5 1782 1200 229 43 162 chr3 156949736 156950045 -2649738 - RMER12B LTR ERVK 0 1572 1308 5 1782 459 0 0 0 chr3 156950045 156950096 -2649687 + (TC)n Simple_repeat Simple_repeat 1 51 0 5 1782 1740 176 31 87 chr3 156950096 156950656 -2649127 - RMER12B LTR ERVK -265 1307 926 5 1782 7246 120 35 4 chr3 156950656 156952719 -2647064 - L1_Mus1 LINE L1 -6 6561 4421 5 1782 4082 172 107 6 chr3 156952719 156953567 -2646216 - RMER12B LTR ERVK -469 935 2 5 1782 257 325 39 0 chr3 156954562 156954639 -2645144 + ID SINE ID 4 83 -141 5 1782 428 276 99 9 chr3 156955024 156955247 -2644536 - L1MB8 LINE L1 -10 6168 5926 5 1782 3408 85 11 8 chr3 156955388 156955864 -2643919 - L1_Mus3 LINE L1 -3 6635 6159 5 1782 378 200 73 24 chr3 156955933 156956015 -2643768 - B4 SINE B4 -205 87 2 5 1782 554 334 34 62 chr3 156956637 156956927 -2642856 + MTE2a LTR MaLR 18 270 -109 5 1782 371 196 38 6 chr3 156957690 156957849 -2641934 + (TG)n Simple_repeat Simple_repeat 2 165 0 5 1782 558 41 0 0 chr3 156959496 156959569 -2640214 + (TG)n Simple_repeat Simple_repeat 2 74 0 5 1782 318 212 6 45 chr3 156959655 156959833 -2639950 + (TATG)n Simple_repeat Simple_repeat 4 174 0 5 1782 391 119 60 0 chr3 156959848 156959915 -2639868 - HAL1-3A_ME LINE L1 -831 2027 1957 5 1782 400 278 0 0 chr3 156960779 156960869 -2638914 - ID_B1 SINE B4 -19 205 116 5 1782 1299 20 0 0 chr3 156961198 156961345 -2638438 + B1_Mus2 SINE Alu 1 147 0 5 1782 252 0 0 0 chr3 156961346 156961374 -2638409 + (A)n Simple_repeat Simple_repeat 1 28 0 5 1782 21 0 0 0 chr3 156961692 156961713 -2638070 + AT_rich Low_complexity Low_complexity 1 21 0 5 1782 353 131 35 12 chr3 156961737 156961822 -2637961 + GA-rich Low_complexity Low_complexity 2 88 0 5 1782 1613 283 72 108 chr3 156964781 156965546 -2634237 + RMER19A LTR ERVK 1 737 0 5 1782 1224 270 77 14 chr3 156966303 156966667 -2633116 - MTD LTR MaLR -14 405 19 5 1782 325 278 158 22 chr3 156969555 156969739 -2630044 + ORR1E LTR MaLR 1 209 -150 5 1782 186 128 0 0 chr3 156971303 156971342 -2628441 + (TTTTTG)n Simple_repeat Simple_repeat 6 44 0 5 1782 198 206 292 42 chr3 156971798 156971894 -2627889 + L2 LINE L2 2755 2874 -545 5 1782 28 0 0 0 chr3 156972069 156972097 -2627686 + AT_rich Low_complexity Low_complexity 1 28 0 5 1782 270 0 0 0 chr3 156972097 156972127 -2627656 + (TG)n Simple_repeat Simple_repeat 1 30 0 5 1782 477 0 0 0 chr3 156972127 156972179 -2627604 + (GA)n Simple_repeat Simple_repeat 1 53 0 5 1782 606 279 8 0 chr3 156972197 156972326 -2627457 - RSINE1 SINE B4 -34 131 2 5 1782 476 169 0 0 chr3 156972427 156972504 -2627279 + (CAGAGA)n Simple_repeat Simple_repeat 2 78 0 5 1782 22 80 0 0 chr3 156972723 156972773 -2627010 + AT_rich Low_complexity Low_complexity 1 50 0 5 1782 3498 31 26 0 chr3 156973679 156974095 -2625688 - L1Md_F2 LINE L1 -12 6570 6144 5 1782 1328 180 43 40 chr3 156974162 156974463 -2625320 + Lx4B LINE L1 6753 7054 -4 5 1782 689 275 43 41 chr3 156980044 156980261 -2619522 + B3A SINE B2 1 214 -2 5 1782 295 247 0 0 chr3 156980262 156980335 -2619448 + (CA)n Simple_repeat Simple_repeat 2 74 0 5 1782 22 0 0 0 chr3 156980349 156980371 -2619412 + AT_rich Low_complexity Low_complexity 1 22 0 5 1782 2568 170 62 29 chr3 156981365 156981911 -2617872 - Lx2B LINE L1 -5 6995 6432 5 1782 1522 83 5 0 chr3 156982691 156982909 -2616874 - L1_Mus3 LINE L1 -370 6268 6050 5 1782 2311 93 79 0 chr3 156982909 156983265 -2616518 + L1_Mus3 LINE L1 6249 6632 -6 5 1782 577 231 0 0 chr3 156983342 156983459 -2616324 + PB1D9 SINE Alu 1 117 -3 5 1782 461 220 11 0 chr3 156985116 156985207 -2614576 + MT2B LTR ERVL 4 95 -438 5 1782 527 240 195 62 chr3 156985314 156985348 -2614435 + MT2B LTR ERVL 82 110 -423 5 1782 3196 53 5 5 chr3 156985348 156985748 -2614035 - MTB LTR MaLR 0 400 1 5 1782 857 250 126 81 chr3 156985748 156986091 -2613692 + MT2B LTR ERVL 111 601 0 5 1782 1146 209 83 113 chr3 156986278 156986640 -2613143 - RMER21B LTR ERV1 0 842 492 5 1782 1118 55 0 76 chr3 156986898 156987056 -2612727 + B1_Mus1 SINE Alu 3 148 0 5 1782 292 214 255 19 chr3 156987560 156987717 -2612066 + Lx6 LINE L1 7262 7455 -5 5 1782 440 278 199 44 chr3 156988722 156989038 -2610745 - MLT1A0 LTR MaLR 0 365 1 5 1782 269 265 370 68 chr3 156989202 156989368 -2610415 + B3 SINE B2 1 216 0 5 1782 261 0 0 0 chr3 156989690 156989719 -2610064 + (CA)n Simple_repeat Simple_repeat 2 30 0 5 1782 228 35 0 0 chr3 156989719 156989747 -2610036 + (GA)n Simple_repeat Simple_repeat 2 30 0 5 1782 248 349 45 9 chr3 156990160 156990270 -2609513 - MLT1J2 LTR MaLR -278 170 57 5 1782 1160 50 0 0 chr3 156990668 156990807 -2608976 + B1_Mm SINE Alu 1 139 -8 5 1782 262 116 0 0 chr3 156990930 156990973 -2608810 + (TA)n Simple_repeat Simple_repeat 1 43 0 5 1782 510 188 0 0 chr3 156990973 156991074 -2608709 + (TG)n Simple_repeat Simple_repeat 2 102 0 5 1782 824 192 0 11 chr3 156991052 156991231 -2608552 + (TATATG)n Simple_repeat Simple_repeat 1 177 0 5 1782 283 30 0 0 chr3 156991231 156991264 -2608519 + (TG)n Simple_repeat Simple_repeat 2 34 0 5 1782 349 194 19 19 chr3 156991680 156991785 -2607998 + (TATG)n Simple_repeat Simple_repeat 2 106 0 5 1782 752 197 11 0 chr3 156991782 156991960 -2607823 + (TATATG)n Simple_repeat Simple_repeat 1 180 0 5 1782 702 216 0 0 chr3 156992006 156992182 -2607601 + (TG)n Simple_repeat Simple_repeat 1 176 0 5 1782 308 54 0 0 chr3 156992184 156992221 -2607562 - HAL1-3A_ME LINE L1 -846 2012 1976 5 1782 446 351 0 19 chr3 156992224 156992381 -2607402 - B4A SINE B4 -137 155 2 5 1782 252 364 9 0 chr3 156992902 156993012 -2606771 + (TG)n Simple_repeat Simple_repeat 2 112 0 5 1782 648 343 74 15 chr3 156993012 156993281 -2606502 - B4A SINE B4 0 292 8 5 1782 3657 120 0 22 chr3 156994193 156994748 -2605035 + Lx LINE L1 6105 6647 -7 6 1782 374 338 49 14 chr3 156994875 156995019 -2604764 + L2a LINE L2 3262 3410 -16 6 1782 544 290 145 58 chr3 156996362 156996706 -2603077 + MTE2a LTR MaLR 1 374 -5 6 1782 22 0 0 0 chr3 156996989 156997011 -2602772 + AT_rich Low_complexity Low_complexity 1 22 0 6 1782 459 0 0 0 chr3 156997381 156997432 -2602351 + (T)n Simple_repeat Simple_repeat 1 51 0 6 1782 1069 87 0 0 chr3 156997437 156997575 -2602208 - B1_Mus1 SINE Alu -8 140 3 6 1782 245 188 0 20 chr3 157000000 157000049 -2599734 + B4 SINE B4 109 156 -136 1 1782 228 333 0 0 chr3 157000122 157000200 -2599583 + L1MC LINE L1 5825 5902 -442 2 1782 3472 125 15 6 chr3 157000185 157000716 -2599067 - Lx3B LINE L1 -114 5772 5237 3 1782 8130 107 52 7 chr3 157000716 157001869 -2597914 + Lx3B LINE L1 5765 6969 -4 3 1782 35 0 0 0 chr3 157001873 157001908 -2597875 + AT_rich Low_complexity Low_complexity 1 35 0 4 1782 393 186 161 29 chr3 157003021 157003162 -2596621 - L1M2 LINE L1 -689 5608 5456 5 1782 730 258 68 6 chr3 157003193 157003432 -2596351 + L1MA4 LINE L1 5657 5930 -370 6 1782 222 354 6 22 chr3 157003610 157003792 -2595991 + (CAA)n Simple_repeat Simple_repeat 1 179 0 7 1782 307 296 6 80 chr3 157004801 157004977 -2594806 - MER5C DNA MER1_type -1 312 150 8 1782 198 167 0 0 chr3 157005185 157005221 -2594562 + (CCA)n Simple_repeat Simple_repeat 1 36 0 9 1782 21 71 0 0 chr3 157006084 157006126 -2593657 + AT_rich Low_complexity Low_complexity 1 42 0 1 1782 1474 81 14 23 chr3 157007052 157007267 -2592516 + L1_Mus3 LINE L1 6423 6635 -3 1 1782 1241 190 195 6 chr3 157010115 157010428 -2589355 - ORR1D1 LTR MaLR 0 374 3 1 1782 1331 23 23 0 chr3 157010839 157011014 -2588769 + (TC)n Simple_repeat Simple_repeat 2 180 0 1 1782 583 291 29 6 chr3 157011024 157011179 -2588604 - B4A SINE B4 -4 288 130 1 1782 1186 187 19 12 chr3 157011179 157011479 -2588304 - MTD LTR MaLR 0 419 4 1 1782 310 244 195 27 chr3 157013887 157014072 -2585711 + MLT1F-int LTR MaLR 360 575 -914 1 1782 440 294 25 0 chr3 157014136 157014255 -2585528 + B1F SINE Alu 2 123 -26 1 1782 463 75 0 0 chr3 157014436 157014503 -2585280 - Lx3_Mus LINE L1 0 7009 6943 1 1782 438 261 40 40 chr3 157014811 157014935 -2584848 - ID_B1 SINE B4 -21 203 80 1 1782 361 248 65 63 chr3 157014956 157015161 -2584622 - L1MA6 LINE L1 -1 6302 6099 2 1782 684 232 54 38 chr3 157016011 157016167 -2583616 + B3A SINE B2 1 158 -40 2 1782 234 0 0 0 chr3 157016167 157016193 -2583590 + (TG)n Simple_repeat Simple_repeat 2 27 0 2 1782 684 232 54 38 chr3 157016193 157016220 -2583563 + B3A SINE B2 159 186 -12 2 1782 23 0 0 0 chr3 157016225 157016248 -2583535 + AT_rich Low_complexity Low_complexity 1 23 0 2 1782 1474 206 56 70 chr3 157016284 157016420 -2583363 - RMER6C LTR ERVK 0 690 553 2 1782 3286 32 61 5 chr3 157016420 157016795 -2582988 - MTA_Mm LTR MaLR 0 396 1 2 1782 1474 206 56 70 chr3 157016795 157017086 -2582697 - RMER6C LTR ERVK -138 552 269 2 1782 260 174 22 0 chr3 157017090 157017136 -2582647 - RMER6C LTR ERVK -673 47 1 2 1782 423 0 0 0 chr3 157017211 157017258 -2582525 + (TG)n Simple_repeat Simple_repeat 2 48 0 2 1782 252 278 93 39 chr3 157017262 157017378 -2582405 - B2_Mm1t SINE B2 -33 165 44 2 1782 212 240 0 20 chr3 157017966 157018017 -2581766 + CT-rich Low_complexity Low_complexity 2 51 0 2 1782 309 264 98 49 chr3 157018223 157018406 -2581377 + L1M5 LINE L1 5084 5275 -871 2 1782 1266 192 249 0 chr3 157019114 157019411 -2580372 + ORR1D1 LTR MaLR 4 374 0 3 1782 386 310 57 43 chr3 157019828 157020037 -2579746 + B3 SINE B2 5 216 0 3 1782 258 32 0 0 chr3 157020598 157020629 -2579154 + (A)n Simple_repeat Simple_repeat 1 31 0 3 1782 233 273 0 115 chr3 157021952 157022039 -2577744 + PB1D10 SINE Alu 33 109 -8 3 1782 655 256 74 32 chr3 157022049 157022239 -2577544 + B3A SINE B2 1 198 0 3 1782 233 260 0 40 chr3 157022246 157022322 -2577461 + GA-rich Low_complexity Low_complexity 3 75 0 3 1782 470 250 179 48 chr3 157023354 157023522 -2576261 + RMER20B LTR ERVK 126 315 -312 3 1782 3446 157 25 36 chr3 157023535 157024202 -2575581 + Lx6 LINE L1 4411 5070 -810 3 222 4340 190 30 22 chr3 157024218 157025013 -2574770 + Lx6 LINE L1 5321 6109 -1351 3 1783 863 84 7 0 chr3 157025013 157025156 -2574627 + (GA)n Simple_repeat Simple_repeat 1 144 0 3 1783 4340 225 58 28 chr3 157025156 157025613 -2574170 + Lx6 LINE L1 6110 6610 -850 3 1783 1267 194 168 105 chr3 157025618 157026124 -2573659 - RLTR31_Mur LTR ERVK -5 548 11 3 1783 2801 248 78 68 chr3 157026155 157026855 -2572928 + Lx6 LINE L1 6605 7324 -136 3 1783 1380 47 6 0 chr3 157026855 157027026 -2572757 - L1_Mus2 LINE L1 0 6566 6395 4 1783 2801 248 78 68 chr3 157027026 157027131 -2572652 + Lx6 LINE L1 7325 7418 -42 3 1783 212 224 20 0 chr3 157027137 157027186 -2572597 + (TA)n Simple_repeat Simple_repeat 2 51 0 4 1783 432 0 0 0 chr3 157028318 157028366 -2571417 + (TA)n Simple_repeat Simple_repeat 2 49 0 4 1783 823 123 0 0 chr3 157028962 157029068 -2570715 + U6 snRNA snRNA 2 107 0 4 1783 277 175 0 0 chr3 157029068 157029125 -2570658 + Lx2 LINE L1 6940 6996 -1 4 1783 25 0 0 0 chr3 157029271 157029296 -2570487 + AT_rich Low_complexity Low_complexity 1 25 0 4 1783 2295 293 100 41 chr3 157029703 157031292 -2568491 + L1_Mur3 LINE L1 1269 2977 -2870 4 1783 972 295 35 29 chr3 157031326 157031672 -2568111 + L1_Mur3 LINE L1 3265 3612 -2268 4 1783 1180 18 29 18 chr3 157031672 157031843 -2567940 + (TAGA)n Simple_repeat Simple_repeat 4 176 0 4 1783 425 219 9 0 chr3 157032510 157032624 -2567159 + (CA)n Simple_repeat Simple_repeat 2 116 0 4 1783 1280 129 124 0 chr3 157034641 157034842 -2564941 + URR1A DNA MER1_type 1 226 0 4 1783 212 0 0 35 chr3 157035342 157035371 -2564412 + (TG)n Simple_repeat Simple_repeat 1 28 0 5 1783 450 0 0 0 chr3 157035371 157035420 -2564363 + (GA)n Simple_repeat Simple_repeat 1 50 0 5 1783 680 262 50 0 chr3 157035421 157035562 -2564221 - B3A SINE B2 -42 156 9 5 1783 457 309 32 70 chr3 157037448 157037629 -2562154 - MIRb SINE MIR -31 237 49 5 1783 189 271 16 48 chr3 157038492 157038554 -2561229 + L4 LINE RTE 628 687 -1342 5 1783 6242 41 0 1 chr3 157039315 157040021 -2559762 + L1Md_F2 LINE L1 5878 6582 0 5 1783 353 244 23 23 chr3 157040441 157040529 -2559254 - B3A SINE B2 0 198 111 5 1783 224 179 18 18 chr3 157041147 157041204 -2558579 + A-rich Low_complexity Low_complexity 3 59 0 5 1783 1050 223 199 16 chr3 157041555 157041861 -2557922 + ORR1D1 LTR MaLR 1 362 -12 5 1783 239 220 51 0 chr3 157041868 157041927 -2557856 + RSINE1 SINE B4 69 130 -35 5 1783 2019 125 19 139 chr3 157042448 157042674 -2557109 + RMER17C LTR ERVK 1 190 -220 6 1783 977 116 0 6 chr3 157042674 157042830 -2556953 + (TTC)n Simple_repeat Simple_repeat 3 157 0 6 1783 2019 125 19 139 chr3 157042830 157043069 -2556714 + RMER17C LTR ERVK 191 410 0 6 1783 427 329 167 14 chr3 157044025 157044235 -2555548 + MLT2B4 LTR ERVL 1 242 -314 6 1783 459 52 0 0 chr3 157044391 157044449 -2555334 + (GA)n Simple_repeat Simple_repeat 1 58 0 6 1783 662 113 9 0 chr3 157044455 157044561 -2555222 + (GGA)n Simple_repeat Simple_repeat 2 108 0 6 1783 2306 124 113 3 chr3 157044665 157045020 -2554763 - ORR1B1 LTR MaLR 0 394 1 6 1783 5023 52 0 0 chr3 157045354 157045929 -2553854 + L1Md_F2 LINE L1 5996 6570 -12 6 1783 916 36 14 21 chr3 157046180 157046320 -2553463 + (GAGAA)n Simple_repeat Simple_repeat 1 139 0 6 1783 1291 231 167 0 chr3 157046854 157047201 -2552582 + MTC LTR MaLR 17 421 0 6 1783 276 305 32 48 chr3 157048276 157048369 -2551414 + MamRep1879 DNA hAT? 93 187 -29 6 1783 3821 52 34 17 chr3 157048369 157048836 -2550947 + MT2C_Mm LTR ERVL 1 475 0 7 1783 276 305 32 48 chr3 157048836 157048866 -2550917 + MamRep1879 DNA hAT? 188 214 -2 6 1783 336 274 104 0 chr3 157049498 157049604 -2550179 + B1_Mur2 SINE Alu 30 146 -3 7 1783 785 296 35 116 chr3 157049898 157050242 -2549541 + MER2 DNA MER2_type 2 317 -28 7 1783 2095 149 50 20 chr3 157051408 157051607 -2548176 + RMER17C LTR ERVK 1 210 -200 7 1783 778 85 16 0 chr3 157051607 157051736 -2548047 + (TCTA)n Simple_repeat Simple_repeat 2 132 0 7 1783 2095 149 50 20 chr3 157051736 157051934 -2547849 + RMER17C LTR ERVK 211 409 -1 7 1783 328 295 88 75 chr3 157052352 157052579 -2547204 + RMER15 LTR ERVL 346 575 0 7 1783 688 275 143 48 chr3 157054473 157054886 -2544897 - Arthur1 DNA Tip100 -901 3046 2595 7 1783 23 33 0 0 chr3 157055367 157055397 -2544386 + AT_rich Low_complexity Low_complexity 1 30 0 7 1783 412 299 27 49 chr3 157055558 157055741 -2544042 - Arthur1 DNA Tip100 -2011 1936 1758 7 1783 536 242 123 13 chr3 157055745 157055900 -2543883 + B3A SINE B2 1 172 -26 7 1783 351 300 93 39 chr3 157055901 157056158 -2543625 - Arthur1 DNA Tip100 -2171 1776 1506 7 1783 185 0 40 0 chr3 157056267 157056292 -2543491 + (TTTTTG)n Simple_repeat Simple_repeat 2 27 0 7 1783 1384 67 27 32 chr3 157056324 157056512 -2543271 - B2_Mm2 SINE B2 -8 187 1 8 1783 238 261 116 0 chr3 157056573 157056642 -2543141 - PB1D10 SINE Alu -6 111 35 8 1783 312 267 117 25 chr3 157059630 157059826 -2539957 - MTEa LTR MaLR -2 377 164 8 1783 7757 64 10 15 chr3 157059854 157061220 -2538563 - L1_Mus2 LINE L1 -6 6560 5201 8 1783 887 65 0 0 chr3 157061225 157061332 -2538451 - U6 snRNA snRNA 0 107 1 8 1783 207 100 0 0 chr3 157061396 157061426 -2538357 + (TATATG)n Simple_repeat Simple_repeat 1 30 0 8 1783 236 167 71 71 chr3 157061426 157061581 -2538202 + Lx9 LINE L1 7458 7612 -32 8 1783 293 290 96 11 chr3 157061612 157061706 -2538077 + PB1D10 SINE Alu 1 102 -18 8 1783 267 275 11 0 chr3 157061851 157061942 -2537841 + MLT1A1 LTR MaLR 315 406 -2 8 1783 209 288 48 0 chr3 157062076 157062222 -2537561 + (ACCTG)n Simple_repeat Simple_repeat 5 157 0 8 1783 280 264 111 19 chr3 157062874 157062982 -2536801 + MER103 DNA DNA 5 122 -44 9 1783 2925 78 7 27 chr3 157064464 157064875 -2534908 + MTB_Mm LTR MaLR 1 403 -4 9 1783 905 251 155 27 chr3 157064882 157064929 -2534854 + MTE2b LTR MaLR 1 46 -333 9 1783 2279 227 11 92 chr3 157064929 157065594 -2534189 - RMER19C LTR ERVK 0 611 1 9 1783 905 251 155 27 chr3 157065594 157065882 -2533901 + MTE2b LTR MaLR 47 379 0 9 1783 24 32 0 0 chr3 157068081 157068112 -2531671 + AT_rich Low_complexity Low_complexity 1 31 0 9 1783 969 180 23 37 chr3 157068961 157069175 -2530608 + MTD LTR MaLR 1 211 -208 9 1783 1149 209 0 5 chr3 157069176 157069378 -2530405 + B3 SINE B2 3 203 -13 9 1783 250 197 14 27 chr3 157069392 157069465 -2530318 + GA-rich Low_complexity Low_complexity 3 74 0 9 1783 853 201 32 18 chr3 157069465 157069647 -2530136 + MTD LTR MaLR 196 381 -38 9 1783 1277 189 200 6 chr3 157069647 157069844 -2529939 - ORR1C2 LTR MaLR 0 384 171 9 1783 552 15 0 0 chr3 157069844 157069909 -2529874 + (GA)n Simple_repeat Simple_repeat 2 66 0 9 1783 1277 189 200 6 chr3 157069909 157070031 -2529752 - ORR1C2 LTR MaLR -214 170 5 9 1783 853 201 32 18 chr3 157070031 157070066 -2529717 + MTD LTR MaLR 382 416 -3 9 1783 602 291 75 5 chr3 157070688 157070888 -2528895 - MTE2b LTR MaLR -61 318 105 1 1783 254 258 11 43 chr3 157072670 157072763 -2527020 - MIR SINE MIR -83 179 90 1 1783 38970 23 2 7 chr3 157074057 157079349 -2520434 + L1Md_T LINE L1 423 5685 -198 1 1783 40794 6 1 0 chr3 157079354 157084620 -2515163 - L1Md_A LINE L1 -1 6581 1312 1 1783 7667 41 1 0 chr3 157084620 157085530 -2514253 + L1Md_T LINE L1 5672 6582 0 1 1783 342 173 39 26 chr3 157086030 157086107 -2513676 + RSINE1 SINE B4 31 108 -57 1 1783 2358 100 127 3 chr3 157086553 157086924 -2512859 + RLTR9B2 LTR ERVK 1 417 -3 1 1783 722 11 11 0 chr3 157087880 157087967 -2511816 + (TAGA)n Simple_repeat Simple_repeat 2 89 0 1 1783 864 201 0 0 chr3 157087973 157088117 -2511666 - B1_Mus2 SINE Alu -3 144 1 1 1783 515 328 65 4 chr3 157088214 157088444 -2511339 + MER2 DNA MER2_type 8 251 -94 1 1783 212 321 36 0 chr3 157088928 157089012 -2510771 - MIRb SINE MIR -75 193 107 1 1783 279 288 0 0 chr3 157091451 157091531 -2508252 - ID4 SINE ID -2 81 2 1 1783 424 359 20 15 chr3 157093231 157093432 -2506351 + LTR89 LTR ERVL? 291 492 -387 1 1783 411 21 0 0 chr3 157093432 157093480 -2506303 + (TTTTA)n Simple_repeat Simple_repeat 1 48 0 1 1783 1134 89 0 0 chr3 157093480 157093626 -2506157 - B1_Mm SINE Alu 0 147 2 1 1783 219 154 0 0 chr3 157094011 157094050 -2505733 + A-rich Low_complexity Low_complexity 1 39 0 1 1783 964 293 72 36 chr3 157094196 157094755 -2505028 + L1MA9 LINE L1 5734 6312 0 1 1783 7178 91 3 57 chr3 157094821 157095860 -2503923 + RLTR13C1 LTR ERVK 1 983 0 1 1783 498 292 203 7 chr3 157096640 157096950 -2502833 + MLT1B LTR MaLR 4 374 -16 1 1783 229 234 52 21 chr3 157100620 157100716 -2499067 + MLT2B1 LTR ERVL 20 118 -438 1 1783 378 0 0 0 chr3 157100745 157100787 -2498996 + (TG)n Simple_repeat Simple_repeat 2 43 0 1 1783 1033 277 11 14 chr3 157100794 157101072 -2498711 - B4A SINE B4 -14 278 2 1 1783 336 284 98 14 chr3 157101212 157101355 -2498428 + MLT2B1 LTR ERVL 339 493 -74 1 1783 402 181 156 37 chr3 157103310 157103400 -2496383 + Lx9 LINE L1 7362 7465 -179 1 1783 180 0 0 0 chr3 157103400 157103420 -2496363 + (TA)n Simple_repeat Simple_repeat 2 21 0 1 1783 402 186 451 20 chr3 157103420 157103506 -2496277 + Lx9 LINE L1 7466 7586 -58 1 1783 412 170 12 65 chr3 157103943 157104619 -2495164 + (CACAC)n Simple_repeat Simple_repeat 1 640 0 1 1783 403 191 12 52 chr3 157104689 157105495 -2494288 + (CACAC)n Simple_repeat Simple_repeat 1 773 0 1 1783 504 377 88 15 chr3 157106132 157106541 -2493242 - MamRep137 DNA TcMar? 0 444 6 1 1783 1152 58 0 0 chr3 157107687 157107825 -2491958 + B1_Mm SINE Alu 2 139 -8 1 1783 190 0 67 0 chr3 157107825 157107855 -2491928 + (CAA)n Simple_repeat Simple_repeat 2 33 0 1 1783 1013 16 0 0 chr3 157108510 157108635 -2491148 - L1Md_A LINE L1 0 6582 6458 1 1783 225 0 0 0 chr3 157109363 157109388 -2490395 + (CA)n Simple_repeat Simple_repeat 2 26 0 1 1783 564 15 0 0 chr3 157109388 157109452 -2490331 + (GA)n Simple_repeat Simple_repeat 2 66 0 1 1783 241 294 0 12 chr3 157109459 157109545 -2490238 + (CATA)n Simple_repeat Simple_repeat 4 88 0 1 1783 456 226 19 0 chr3 157109549 157109704 -2490079 + (CA)n Simple_repeat Simple_repeat 1 158 0 1 1783 1086 226 53 39 chr3 157110131 157110400 -2489383 + B4 SINE B4 3 277 -15 1 1783 708 92 0 0 chr3 157110400 157110519 -2489264 + (GA)n Simple_repeat Simple_repeat 2 120 0 1 1783 1086 226 53 39 chr3 157110519 157110534 -2489249 + B4 SINE B4 278 291 -1 1 1783 261 0 0 0 chr3 157111712 157111741 -2488042 + (A)n Simple_repeat Simple_repeat 1 29 0 1 1783 600 293 45 0 chr3 157113629 157113871 -2485912 - L1MB1 LINE L1 -121 6068 5816 1 1783 647 293 140 34 chr3 157113885 157114510 -2485273 + L1M3 LINE L1 4909 5603 -565 1 1783 22 0 0 0 chr3 157114510 157114532 -2485251 + AT_rich Low_complexity Low_complexity 1 22 0 1 1783 24 0 0 0 chr3 157114580 157114604 -2485179 + AT_rich Low_complexity Low_complexity 1 24 0 1 1783 5361 56 89 4 chr3 157114609 157115307 -2484476 - L1_Mus1 LINE L1 -2 6565 5809 1 1783 180 0 0 0 chr3 157115308 157115328 -2484455 + (CAA)n Simple_repeat Simple_repeat 2 21 0 1 1783 384 325 39 8 chr3 157115414 157115541 -2484242 - RSINE1 SINE B4 -34 131 1 1 1783 1625 20 0 14 chr3 157115566 157115773 -2484010 - IAPEY2_LTR LTR ERVK 0 357 154 1 1783 310 138 33 33 chr3 157115779 157115839 -2483944 - MTC LTR MaLR -351 70 11 1 1783 568 279 11 60 chr3 157117113 157117391 -2482392 + RMER15 LTR ERVL 28 383 -192 1 1783 585 270 71 52 chr3 157117393 157117832 -2481951 - RLTR12B LTR ERVK -14 514 20 1 1783 564 254 46 36 chr3 157117826 157117871 -2481912 + RMER15 LTR ERVL 378 422 -153 1 1783 1765 227 55 8 chr3 157117871 157118270 -2481513 - MTD LTR MaLR 0 419 2 1 1783 564 254 46 36 chr3 157118270 157118420 -2481363 + RMER15 LTR ERVL 423 575 0 1 1783 13445 79 1 4 chr3 157118777 157121296 -2478487 + L1_Mus2 LINE L1 4056 6566 0 1 1783 460 285 102 61 chr3 157122184 157122577 -2477206 + L1ME3A LINE L1 5758 6166 -7 1 1783 668 232 43 0 chr3 157123351 157123489 -2476294 + ID_B1 SINE B4 60 203 -21 1 1783 204 118 72 14 chr3 157123500 157123569 -2476214 + GA-rich Low_complexity Low_complexity 4 76 0 1 1783 182 378 8 32 chr3 157124679 157124802 -2474981 - L2c LINE L2 0 3387 3268 1 1783 1319 236 91 88 chr3 157126096 157126560 -2473223 + Lx8 LINE L1 6325 6789 -684 1 1783 233 305 198 29 chr3 157126610 157126853 -2472930 - L2c LINE L2 -527 2892 2609 1 1783 197 307 122 25 chr3 157126971 157127168 -2472615 - L2c LINE L2 -975 2444 2229 1 1783 293 285 43 65 chr3 157127928 157128112 -2471671 + MER33 DNA MER1_type 123 302 -22 1 1783 252 120 0 0 chr3 157129031 157129081 -2470702 + (A)n Simple_repeat Simple_repeat 1 50 0 1 1783 1949 269 84 13 chr3 157129087 157129788 -2469995 - FordPrefect DNA Tip100 -79 1604 854 1 1783 705 258 87 36 chr3 157131402 157131655 -2468128 - MTD LTR MaLR -15 404 139 1 1783 592 255 49 53 chr3 157131628 157131728 -2468055 - MTC LTR MaLR -178 243 140 1 1783 2552 162 52 50 chr3 157131728 157132288 -2467495 - RLTR31_Mm LTR ERVK 0 561 1 1 1783 592 255 49 53 chr3 157132288 157132431 -2467352 - MTC LTR MaLR -282 139 1 1 1783 344 324 18 0 chr3 157132438 157132549 -2467234 + MIRb SINE MIR 107 219 -49 1 1783 1454 153 24 9 chr3 157132917 157133241 -2466542 - ORR1A2 LTR MaLR 0 327 1 1 1783 942 222 62 8 chr3 157133642 157133883 -2465900 - Lx9 LINE L1 -11 7633 7380 1 1783 603 0 0 0 chr3 157134389 157134456 -2465327 + (TC)n Simple_repeat Simple_repeat 1 67 0 1 1783 357 254 132 0 chr3 157134738 157134852 -2464931 + B4A SINE B4 164 292 0 1 1783 844 232 89 36 chr3 157135984 157136304 -2463479 - MTEa LTR MaLR 0 379 8 1 1783 535 302 120 12 chr3 157136626 157136884 -2462899 + B4 SINE B4 3 288 -4 1 1783 289 253 0 12 chr3 157136889 157136969 -2462814 + (CA)n Simple_repeat Simple_repeat 2 80 0 1 1783 405 131 0 78 chr3 157138462 157138578 -2461205 - L1Md_F2 LINE L1 0 6582 6476 1 1783 2241 52 71 0 chr3 157138580 157138889 -2460894 - IAPEY_LTR LTR ERVK 0 385 55 1 1783 2162 98 0 7 chr3 157138890 157139189 -2460594 - L1Md_F2 LINE L1 -94 6488 6192 1 1783 4130 57 15 0 chr3 157141767 157142290 -2457493 + L1_Mus1 LINE L1 6037 6567 0 1 1783 345 291 77 30 chr3 157143198 157143367 -2456416 + MIR SINE MIR 64 241 -21 1 1783 254 278 40 134 chr3 157144133 157144357 -2455426 + MLT1B LTR MaLR 129 331 -59 1 1783 367 321 94 70 chr3 157144439 157144717 -2455066 + ERVL-B4-int LTR ERVL 5407 5682 -32 1 1783 465 34 0 0 chr3 157144717 157144776 -2455007 + (TG)n Simple_repeat Simple_repeat 2 60 0 1 1783 367 321 94 70 chr3 157144776 157144795 -2454988 + ERVL-B4-int LTR ERVL 5683 5710 -4 1 1783 295 273 70 43 chr3 157144807 157144922 -2454861 + MLT2B4 LTR ERVL 1 118 -438 1 1783 218 194 0 0 chr3 157145005 157145041 -2454742 + RSINE1 SINE B4 6 41 -124 1 1783 216 0 0 0 chr3 157145065 157145089 -2454694 + (CA)n Simple_repeat Simple_repeat 1 24 0 1 1783 486 0 0 0 chr3 157145089 157145142 -2454641 + (GA)n Simple_repeat Simple_repeat 2 55 0 1 1783 1269 14 0 0 chr3 157145308 157145454 -2454329 - B1_Mus2 SINE Alu 0 147 2 1 1783 388 206 92 42 chr3 157146140 157146282 -2453501 - ORR1E LTR MaLR -210 149 1 1 1783 228 307 58 52 chr3 157146695 157146867 -2452916 + MIRb SINE MIR 18 190 -78 1 1783 729 269 29 0 chr3 157147386 157147561 -2452222 + B3A SINE B2 1 180 -18 1 1783 21 82 0 0 chr3 157147581 157147630 -2452153 + AT_rich Low_complexity Low_complexity 1 49 0 1 1783 847 176 0 7 chr3 157148098 157148241 -2451542 + B1_Mus2 SINE Alu 1 142 -5 1 1783 257 240 0 13 chr3 157148248 157148324 -2451459 + GA-rich Low_complexity Low_complexity 1 75 0 1 1783 264 305 102 41 chr3 157150081 157150228 -2449555 - L1M5 LINE L1 -497 5665 5510 1 1783 432 0 0 0 chr3 157151688 157151736 -2448047 + (TAAAA)n Simple_repeat Simple_repeat 3 50 0 1 1783 420 260 29 0 chr3 157152102 157152206 -2447577 - RSINE1 SINE B4 -51 114 8 1 1783 1884 136 24 70 chr3 157152209 157152580 -2447203 - ORR1B1 LTR MaLR 0 394 41 1 1783 298 239 298 29 chr3 157152752 157153067 -2446716 - L1M4c LINE L1 -4574 1810 1411 1 1783 435 305 133 9 chr3 157153098 157153304 -2446479 - L1M3c LINE L1 -4679 2358 2136 1 1783 396 0 0 0 chr3 157153304 157153348 -2446435 + (TG)n Simple_repeat Simple_repeat 1 44 0 1 1783 435 305 133 9 chr3 157153348 157153488 -2446295 - L1M3c LINE L1 -4902 2135 1970 1 1783 324 288 104 94 chr3 157153546 157153929 -2445854 - L1M3c LINE L1 -5620 1410 1024 1 1783 296 330 158 50 chr3 157154425 157154881 -2444902 - Arthur1 DNA Tip100 -3267 680 176 1 1784 230 189 187 11 chr3 157156987 157157014 -2442769 + Lx9 LINE L1 7532 7568 -76 1 1784 396 0 0 0 chr3 157157014 157157058 -2442725 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 1784 230 189 187 11 chr3 157157058 157157121 -2442662 + Lx9 LINE L1 7569 7638 -6 1 1784 264 279 103 0 chr3 157157381 157157449 -2442334 + B1F2 SINE Alu 8 82 -67 1 1784 1051 154 131 0 chr3 157157477 157157691 -2442092 + ORR1B1 LTR MaLR 1 242 -152 1 1784 222 258 0 0 chr3 157157779 157157868 -2441915 + (TG)n Simple_repeat Simple_repeat 1 89 0 1 1784 301 259 11 0 chr3 157157910 157158084 -2441699 + (TG)n Simple_repeat Simple_repeat 2 177 0 1 1784 450 0 0 0 chr3 157158486 157158536 -2441247 + (TG)n Simple_repeat Simple_repeat 2 51 0 1 1784 3815 117 8 105 chr3 157158601 157159365 -2440418 + MTB-int LTR MaLR 409 1098 0 1 1784 3192 65 8 2 chr3 157159365 157159763 -2440020 + MTB LTR MaLR 1 400 0 1 1784 493 286 156 55 chr3 157159947 157160513 -2439270 + HAL1 LINE L1 895 1517 -990 2 1784 686 208 160 60 chr3 157160546 157160866 -2438917 - MTD LTR MaLR -15 404 9 2 1784 515 262 5 47 chr3 157160881 157161073 -2438710 + Lx5 LINE L1 6862 7045 -5 2 1784 23 0 0 0 chr3 157161076 157161099 -2438684 + AT_rich Low_complexity Low_complexity 1 23 0 2 1784 3646 227 92 28 chr3 157161187 157162510 -2437273 + Lx9 LINE L1 4887 6329 -1144 2 1784 1055 232 54 0 chr3 157163831 157164111 -2435672 + Charlie2b DNA MER1_type 1777 2071 -711 2 1784 207 152 0 0 chr3 157164114 157164160 -2435623 + GA-rich Low_complexity Low_complexity 2 47 0 2 1784 251 275 170 11 chr3 157164160 157164443 -2435340 + Charlie2b DNA MER1_type 2050 2377 -405 2 1784 22 56 0 0 chr3 157165168 157165204 -2434579 + AT_rich Low_complexity Low_complexity 1 36 0 2 1784 1114 192 3 131 chr3 157166856 157167191 -2432592 + Lx6 LINE L1 7165 7456 -4 2 1784 301 240 197 16 chr3 157167745 157167872 -2431911 + MIRc SINE MIR 114 263 -5 2 1784 234 0 0 0 chr3 157168182 157168208 -2431575 + (CTGTG)n Simple_repeat Simple_repeat 3 28 0 2 1784 234 311 119 15 chr3 157168967 157169101 -2430682 + L1M5 LINE L1 5477 5624 -540 2 1784 329 317 119 88 chr3 157169269 157169587 -2430196 - MTEa LTR MaLR -49 330 3 2 1784 892 241 71 38 chr3 157169610 157169877 -2429906 + Lx7 LINE L1 5600 5909 -1787 2 1784 655 285 147 112 chr3 157170285 157170787 -2428996 - MLT2B4 LTR ERVL 0 520 1 2 1784 302 340 85 55 chr3 157171085 157171250 -2428533 + MLT1K LTR MaLR 410 579 -16 2 1784 638 300 122 121 chr3 157171554 157172290 -2427493 - LTR41B LTR ERVL -2 756 20 2 1784 653 342 5 0 chr3 157172364 157172548 -2427235 - B4A SINE B4 -107 185 1 2 1784 965 229 25 0 chr3 157173349 157173550 -2426233 + B3 SINE B2 1 206 -10 2 1784 501 17 0 0 chr3 157173596 157173654 -2426129 + (TG)n Simple_repeat Simple_repeat 1 58 0 2 1784 504 0 0 0 chr3 157174212 157174268 -2425515 + (TAGA)n Simple_repeat Simple_repeat 1 56 0 2 1784 8145 77 5 1 chr3 157175069 157176644 -2423139 - L1_Mus1 LINE L1 0 6567 4939 2 1784 2789 147 133 55 chr3 157177011 157177537 -2422246 + RMER2 LTR ERV1 1 567 0 2 1784 1176 83 7 0 chr3 157177741 157177886 -2421897 + B1_Mus1 SINE Alu 1 146 -2 2 1784 543 108 0 0 chr3 157177886 157177979 -2421804 + (CAA)n Simple_repeat Simple_repeat 2 94 0 2 1784 532 298 177 16 chr3 157178998 157179247 -2420536 - MLT1A LTR MaLR -85 289 1 2 1784 1625 243 35 13 chr3 157180311 157180353 -2419430 + Lx8 LINE L1 6133 6170 -1303 2 1784 1149 87 0 0 chr3 157180353 157180525 -2419258 + (TG)n Simple_repeat Simple_repeat 1 172 0 2 1784 1625 243 35 13 chr3 157180525 157180858 -2418925 + Lx8 LINE L1 6171 6516 -957 2 1784 2219 199 68 30 chr3 157180967 157181510 -2418273 + RMER1C Other Other 776 1339 -3 2 1784 23 33 0 0 chr3 157181530 157181560 -2418223 + AT_rich Low_complexity Low_complexity 1 30 0 2 1784 531 0 0 0 chr3 157181616 157181675 -2418108 + (GA)n Simple_repeat Simple_repeat 2 60 0 2 1784 1578 176 60 156 chr3 157181761 157182179 -2417604 - ORR1C1 LTR MaLR 0 378 1 2 1784 558 203 0 0 chr3 157182955 157183073 -2416710 + (TA)n Simple_repeat Simple_repeat 2 119 0 2 1784 408 20 0 0 chr3 157183442 157183491 -2416292 + (CA)n Simple_repeat Simple_repeat 2 50 0 2 1784 1008 85 5 38 chr3 157184130 157184314 -2415469 + (GGAAA)n Simple_repeat Simple_repeat 3 180 0 2 1784 300 53 0 0 chr3 157184314 157184352 -2415431 + (GAAAA)n Simple_repeat Simple_repeat 1 38 0 2 1784 299 284 51 142 chr3 157184552 157184806 -2414977 + RMER2 LTR ERV1 337 567 0 2 1784 341 301 87 31 chr3 157185279 157185440 -2414343 - MIR SINE MIR -76 186 17 2 1784 180 0 0 0 chr3 157185472 157185492 -2414291 + (TGG)n Simple_repeat Simple_repeat 1 20 0 2 1784 405 0 0 0 chr3 157186557 157186602 -2413181 + (CA)n Simple_repeat Simple_repeat 2 46 0 2 1784 222 267 0 0 chr3 157186694 157186739 -2413044 + polypyrimidine Low_complexity Low_complexity 2 46 0 2 1784 773 348 85 34 chr3 157186880 157187267 -2412516 - LTR80A LTR ERVL -14 569 163 2 1784 2429 235 138 82 chr3 157187279 157188352 -2411431 + Lx6 LINE L1 6105 7450 -10 2 1784 349 314 29 0 chr3 157188357 157188462 -2411321 - Charlie1a DNA MER1_type -1342 113 6 2 1784 288 293 104 43 chr3 157188464 157188628 -2411155 + MIR SINE MIR 65 238 -24 2 1784 328 259 33 11 chr3 157189412 157189502 -2410281 + MER102c DNA MER1_type 227 318 -13 2 1784 345 306 137 0 chr3 157190735 157190859 -2408924 + MLT1E1A LTR MaLR 19 159 -521 2 1784 802 296 99 30 chr3 157190945 157191307 -2408476 + MLT1E1A LTR MaLR 286 672 -8 2 1784 1592 324 108 16 chr3 157191608 157192048 -2407735 - FordPrefect DNA Tip100 -65 1618 1122 2 1784 225 94 0 0 chr3 157192048 157192080 -2407703 + (TTATG)n Simple_repeat Simple_repeat 2 33 0 2 1784 1592 324 108 16 chr3 157192080 157192472 -2407311 - FordPrefect DNA Tip100 -562 1121 709 2 1784 468 369 87 43 chr3 157192573 157192873 -2406910 - FordPrefect DNA Tip100 -1137 546 234 2 1784 285 362 77 23 chr3 157193885 157194238 -2405545 - L1ME3A LINE L1 -235 5938 5567 2 1784 306 300 190 7 chr3 157194305 157194539 -2405244 - MER47B DNA MER2_type -118 300 22 2 1784 248 196 0 51 chr3 157194605 157194664 -2405119 - L1ME3A LINE L1 -707 5466 5411 2 1784 23 54 0 0 chr3 157194896 157194933 -2404850 + AT_rich Low_complexity Low_complexity 1 37 0 2 1784 372 359 19 0 chr3 157195199 157195358 -2404425 + L1MEf LINE L1 263 424 -5776 2 1784 1422 146 5 5 chr3 157195482 157195688 -2404095 + B3 SINE B2 1 206 -10 2 1784 233 223 104 21 chr3 157195712 157195808 -2403975 + L1MEf LINE L1 486 589 -5611 2 1784 1474 81 21 0 chr3 157196125 157196311 -2403472 + B2_Mm2 SINE B2 1 190 -5 2 1784 231 61 0 0 chr3 157197639 157197672 -2402111 + (TCCC)n Simple_repeat Simple_repeat 4 36 0 2 1784 502 170 179 11 chr3 157198812 157198907 -2400876 - PB1D9 SINE Alu -9 111 1 2 1784 562 153 0 0 chr3 157199932 157200017 -2399766 + B3 SINE B2 3 87 -129 2 1784 384 82 0 0 chr3 157200693 157200754 -2399029 + (TG)n Simple_repeat Simple_repeat 2 62 0 2 1784 438 254 118 8 chr3 157200762 157200881 -2398902 - ID_B1 SINE B4 -29 195 64 2 1784 570 29 0 0 chr3 157201357 157201425 -2398358 + (TC)n Simple_repeat Simple_repeat 1 68 0 2 1784 1807 283 122 43 chr3 157201425 157202344 -2397439 - Lx8 LINE L1 -84 7389 6399 2 1784 363 344 64 0 chr3 157203818 157203943 -2395840 - B4A SINE B4 -88 204 72 2 1784 368 247 13 27 chr3 157205427 157205502 -2394281 + ID4_ SINE ID 1 74 -9 2 1784 393 324 54 7 chr3 157208984 157209133 -2390650 - L3 LINE CR1 -858 3631 3476 2 1784 252 0 0 0 chr3 157211755 157211783 -2388000 + (T)n Simple_repeat Simple_repeat 1 28 0 2 1784 408 316 52 32 chr3 157211884 157212038 -2387745 - RSINE1 SINE B4 -3 162 6 2 1784 253 239 328 22 chr3 157212391 157212571 -2387212 - Lx8 LINE L1 -17 7456 7222 2 1784 668 316 49 107 chr3 157212575 157213007 -2386776 - MTD LTR MaLR -12 407 1 2 1784 1139 152 200 8 chr3 157213099 157213344 -2386439 - ORR1B2 LTR MaLR -71 296 5 2 1784 276 277 33 82 chr3 157213579 157213701 -2386082 + Lx9 LINE L1 6982 7097 -547 2 1784 4727 57 30 7 chr3 157213703 157214304 -2385479 - L1Md_F2 LINE L1 0 6582 5968 2 1784 5157 59 61 0 chr3 157214314 157214987 -2384796 - L1_Mm LINE L1 -11 5872 5159 2 1784 16099 61 6 3 chr3 157214975 157217708 -2382075 - L1Md_F2 LINE L1 0 6582 3841 2 1784 595 238 261 21 chr3 157218569 157218856 -2380927 - MTE2a LTR MaLR -6 373 18 2 1784 3689 132 91 5 chr3 157219207 157219559 -2380224 - RLTR33 LTR ERVK 0 678 275 2 1784 1197 225 296 14 chr3 157219559 157220001 -2379782 + RMER2 LTR ERV1 1 567 0 2 1784 3689 132 91 5 chr3 157220001 157220267 -2379516 - RLTR33 LTR ERVK -404 274 7 2 1784 517 280 154 22 chr3 157220285 157220552 -2379231 - L1MD3 LINE L1 -195 7800 7499 2 1784 3195 152 109 6 chr3 157220779 157221471 -2378312 + RLTR25B LTR ERVK 1 835 -268 2 1784 267 235 40 105 chr3 157221630 157221706 -2378077 + ID4 SINE ID 2 72 -11 2 1784 231 36 0 0 chr3 157222012 157222040 -2377743 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 2 1784 1247 35 7 0 chr3 157222042 157222185 -2377598 - B1_Mus2 SINE Alu -1 146 3 2 1784 529 256 388 0 chr3 157222711 157222984 -2376799 - MTEa LTR MaLR 0 379 1 2 1784 977 237 151 32 chr3 157222992 157223105 -2376678 - MTEa-int LTR MaLR -8 1572 1452 2 1784 5353 57 16 1 chr3 157223105 157223777 -2376006 + L1_Mus2 LINE L1 5884 6565 -1 2 1784 183 0 50 75 chr3 157223782 157223822 -2375961 + (TAAA)n Simple_repeat Simple_repeat 1 39 0 2 1784 977 237 151 32 chr3 157223822 157224112 -2375671 - MTEa-int LTR MaLR -134 1446 1115 2 1784 810 277 143 41 chr3 157224183 157224525 -2375258 - MTEa LTR MaLR 0 379 3 2 1784 270 300 78 43 chr3 157224802 157224917 -2374866 - PB1D7 SINE Alu -1 119 1 2 1784 257 167 51 0 chr3 157225003 157225081 -2374702 + (TA)n Simple_repeat Simple_repeat 2 83 0 2 1784 601 277 68 109 chr3 157225190 157225631 -2374152 + RLTR23 LTR ERV1 8 430 0 2 1784 1249 118 21 16 chr3 157225677 157225867 -2373916 + B2_Mm2 SINE B2 1 191 -4 2 1784 30 0 0 0 chr3 157227004 157227034 -2372749 + AT_rich Low_complexity Low_complexity 1 30 0 2 1784 427 281 51 46 chr3 157227169 157227344 -2372439 + B4 SINE B4 42 217 -75 2 1784 5958 109 12 29 chr3 157227346 157228275 -2371508 + Lx3B LINE L1 6061 6973 0 2 1784 1390 92 93 27 chr3 157228523 157228781 -2371002 + Lx LINE L1 6369 6643 -11 2 1784 381 43 0 0 chr3 157228781 157228828 -2370955 + (GA)n Simple_repeat Simple_repeat 2 48 0 2 1784 278 294 23 23 chr3 157228891 157228978 -2370805 + B4A SINE B4 7 93 -199 2 1784 585 0 0 0 chr3 157229072 157229137 -2370646 + (TC)n Simple_repeat Simple_repeat 1 65 0 2 1784 216 0 0 0 chr3 157229137 157229160 -2370623 + (CA)n Simple_repeat Simple_repeat 1 24 0 2 1784 23 0 0 0 chr3 157229201 157229224 -2370559 + AT_rich Low_complexity Low_complexity 1 23 0 2 1784 281 125 0 18 chr3 157229505 157229562 -2370221 + (TA)n Simple_repeat Simple_repeat 2 57 0 2 1784 211 140 0 23 chr3 157231328 157231372 -2368411 + (CA)n Simple_repeat Simple_repeat 1 43 0 3 1784 485 68 0 13 chr3 157231717 157231792 -2367991 + (TC)n Simple_repeat Simple_repeat 1 74 0 3 1784 481 305 49 108 chr3 157232486 157232577 -2367206 - B4A SINE B4 -18 274 197 3 1784 1088 72 0 0 chr3 157232577 157232715 -2367068 + B1_Mus2 SINE Alu 1 138 -9 3 1784 230 0 0 32 chr3 157232715 157232746 -2367037 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 3 1784 481 305 49 108 chr3 157232746 157232940 -2366843 - B4A SINE B4 -96 196 6 3 1784 990 239 19 19 chr3 157234316 157234529 -2365254 + B3 SINE B2 1 213 -3 3 1784 219 69 0 0 chr3 157236328 157236357 -2363426 + (TG)n Simple_repeat Simple_repeat 2 30 0 3 1784 291 54 0 0 chr3 157236357 157236394 -2363389 + (CA)n Simple_repeat Simple_repeat 2 38 0 3 1784 216 0 0 0 chr3 157236604 157236628 -2363155 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 3 1784 1105 50 152 24 chr3 157237330 157237495 -2362288 + B2_Mm2 SINE B2 2 187 -8 3 1784 768 186 0 7 chr3 157237677 157237818 -2361965 + B1_Mus1 SINE Alu 9 148 0 3 1784 322 244 41 0 chr3 157237998 157238081 -2361702 + B1F SINE Alu 13 99 -21 3 1784 230 188 0 20 chr3 157238122 157238171 -2361612 + A-rich Low_complexity Low_complexity 2 49 0 3 1784 291 28 0 0 chr3 157238372 157238408 -2361375 + (CA)n Simple_repeat Simple_repeat 1 36 0 3 1784 270 91 0 52 chr3 157239927 157239985 -2359798 + (GAA)n Simple_repeat Simple_repeat 2 56 0 3 1784 205 159 68 0 chr3 157240342 157240386 -2359397 + G-rich Low_complexity Low_complexity 1 47 0 3 1784 269 230 353 7 chr3 157241499 157241635 -2358148 + MTEb LTR MaLR 1 183 -196 3 1784 492 223 45 23 chr3 157241656 157241789 -2357994 + MTEb LTR MaLR 244 379 0 3 1784 198 118 0 0 chr3 157242091 157242125 -2357658 + (TTTTTA)n Simple_repeat Simple_repeat 2 35 0 3 1784 333 0 0 0 chr3 157242810 157242847 -2356936 + (CA)n Simple_repeat Simple_repeat 2 38 0 3 1784 355 95 13 13 chr3 157244735 157244810 -2354973 + (TTTTTG)n Simple_repeat Simple_repeat 2 76 0 3 1784 246 333 36 0 chr3 157244998 157245109 -2354674 - MIRb SINE MIR -124 144 30 3 1784 550 274 31 36 chr3 157246090 157246283 -2353500 + B4A SINE B4 4 195 -97 3 1784 273 309 48 58 chr3 157246291 157246480 -2353303 + Lx8 LINE L1 7285 7471 -2 3 1784 1507 42 15 26 chr3 157246539 157246734 -2353049 - B2_Mm2 SINE B2 0 195 3 3 1784 716 243 0 26 chr3 157246745 157246897 -2352886 - B1_Mur2 SINE Alu 0 149 2 3 1784 24 53 0 0 chr3 157247044 157247082 -2352701 + AT_rich Low_complexity Low_complexity 1 38 0 3 1784 971 40 0 8 chr3 157247481 157247606 -2352177 + (GGAGA)n Simple_repeat Simple_repeat 2 125 0 3 1784 1935 181 38 24 chr3 157248985 157249354 -2350429 - ORR1D1 LTR MaLR 0 374 1 3 1784 21 71 0 0 chr3 157250120 157250162 -2349621 + AT_rich Low_complexity Low_complexity 1 42 0 3 1784 25777 153 44 11 chr3 157250195 157253654 -2346129 - Lx5 LINE L1 0 7050 3485 3 1784 372 43 0 0 chr3 157253654 157253700 -2346083 + (CTG)n Simple_repeat Simple_repeat 1 46 0 3 1784 25777 146 41 5 chr3 157253700 157255132 -2344651 - Lx5 LINE L1 -2393 3484 1996 3 1784 297 0 0 0 chr3 157255132 157255165 -2344618 + (TG)n Simple_repeat Simple_repeat 2 34 0 3 1784 25777 172 57 20 chr3 157255165 157256446 -2343337 - Lx5 LINE L1 -3882 1995 654 3 1784 23 54 0 0 chr3 157256920 157256957 -2342826 + AT_rich Low_complexity Low_complexity 1 37 0 3 1784 528 274 34 7 chr3 157257635 157257782 -2342001 + B4A SINE B4 26 176 -116 3 1784 189 0 0 0 chr3 157257962 157257983 -2341800 + (TA)n Simple_repeat Simple_repeat 2 22 0 3 1784 2003 164 5 47 chr3 157258100 157258528 -2341255 - RMER17C LTR ERVK 0 410 1 3 1784 362 307 99 90 chr3 157258798 157259031 -2340752 + B4A SINE B4 2 236 -56 3 1784 2729 94 18 0 chr3 157259058 157259453 -2340330 + MTB_Mm LTR MaLR 6 407 0 3 1784 3367 171 16 7 chr3 157259576 157260143 -2339640 - Lx5 LINE L1 -2 7048 6477 3 1784 697 133 42 0 chr3 157260358 157260478 -2339305 + B1_Mur4 SINE Alu 26 150 0 3 1784 24 0 0 0 chr3 157260550 157260574 -2339209 + AT_rich Low_complexity Low_complexity 1 24 0 3 1784 436 232 113 11 chr3 157260740 157260891 -2338892 + MTD LTR MaLR 231 405 -14 3 1784 234 0 0 0 chr3 157262148 157262174 -2337609 + (TA)n Simple_repeat Simple_repeat 2 27 0 3 1784 534 16 0 0 chr3 157262485 157262548 -2337235 + (TA)n Simple_repeat Simple_repeat 1 63 0 3 1784 311 300 54 0 chr3 157262995 157263125 -2336658 - MLT1A LTR MaLR -2 503 367 3 1784 1799 265 108 65 chr3 157263144 157264362 -2335421 - Lx8 LINE L1 -1037 6436 5083 3 1784 1095 291 73 30 chr3 157264405 157264869 -2334914 - RCHARR1 DNA MER1_type -487 487 4 3 1784 550 342 68 19 chr3 157264873 157265097 -2334686 - MLT1A LTR MaLR -49 325 98 3 1784 2400 78 25 0 chr3 157265097 157265416 -2334367 - ORR1A2 LTR MaLR 0 327 1 3 1784 550 342 68 19 chr3 157265416 157265501 -2334282 - MLT1A LTR MaLR -277 97 2 3 1784 1336 146 21 16 chr3 157265694 157265939 -2333844 + MTC LTR MaLR 1 242 -179 3 1784 438 108 0 0 chr3 157265939 157266004 -2333779 + (TG)n Simple_repeat Simple_repeat 1 65 0 3 1784 1049 251 22 162 chr3 157266004 157266214 -2333569 + MTC LTR MaLR 232 392 -8 3 1784 196 300 25 130 chr3 157266767 157266928 -2332855 - L2a LINE L2 -29 3397 3254 3 1784 268 239 0 0 chr3 157266961 157267028 -2332755 - B3 SINE B2 0 216 150 3 1784 201 279 0 0 chr3 157267028 157267096 -2332687 + (TG)n Simple_repeat Simple_repeat 1 68 0 3 1784 681 132 0 0 chr3 157267095 157267216 -2332567 + (GA)n Simple_repeat Simple_repeat 1 121 0 3 1784 669 219 8 0 chr3 157267216 157267344 -2332439 - B3 SINE B2 -85 131 3 3 1784 2171 144 87 17 chr3 157270461 157270863 -2328920 - RMER1C Other Other 0 1342 913 3 1784 254 324 52 0 chr3 157271265 157271401 -2328382 + B1F2 SINE Alu 1 143 -6 3 1784 24 0 0 0 chr3 157271453 157271477 -2328306 + AT_rich Low_complexity Low_complexity 1 24 0 3 1784 28 61 0 0 chr3 157272046 157272095 -2327688 + AT_rich Low_complexity Low_complexity 1 49 0 3 1784 248 111 19 0 chr3 157272684 157272738 -2327045 + (CAAA)n Simple_repeat Simple_repeat 2 56 0 3 1784 318 106 0 0 chr3 157273222 157273269 -2326514 + (GA)n Simple_repeat Simple_repeat 2 48 0 3 1784 222 37 0 0 chr3 157274781 157274808 -2324975 + (CAGA)n Simple_repeat Simple_repeat 4 30 0 3 1784 285 230 0 0 chr3 157274831 157274931 -2324852 + (CA)n Simple_repeat Simple_repeat 2 101 0 3 1784 320 200 11 0 chr3 157274987 157275082 -2324701 + (CA)n Simple_repeat Simple_repeat 1 96 0 3 1784 216 255 0 20 chr3 157275266 157275414 -2324369 + (CA)n Simple_repeat Simple_repeat 2 146 0 3 1784 414 0 0 0 chr3 157276547 157276593 -2323190 + (A)n Simple_repeat Simple_repeat 1 46 0 3 1784 229 283 19 0 chr3 157276811 157276864 -2322919 - BC1_Mm scRNA scRNA -77 75 22 3 1784 799 150 53 0 chr3 157276944 157277077 -2322706 - B1_Mur3 SINE Alu -7 142 3 3 1784 1015 101 43 0 chr3 157277321 157277459 -2322324 + B1_Mur3 SINE Alu 1 144 -5 3 1784 1204 89 0 0 chr3 157278086 157278232 -2321551 - B1_Mus1 SINE Alu -2 146 1 3 1784 627 14 0 0 chr3 157278835 157278907 -2320876 + (TA)n Simple_repeat Simple_repeat 2 73 0 3 1784 245 308 64 18 chr3 157279393 157279502 -2320281 + PB1D10 SINE Alu 1 114 -3 3 1784 184 231 19 0 chr3 157279634 157279686 -2320097 - MIRb SINE MIR -95 173 121 3 1784 32 26 0 0 chr3 157280748 157280787 -2318996 + AT_rich Low_complexity Low_complexity 1 39 0 3 1784 26 30 0 0 chr3 157280914 157280947 -2318836 + AT_rich Low_complexity Low_complexity 1 33 0 3 1784 559 248 0 33 chr3 157281910 157282031 -2317752 - PB1D10 SINE Alu 0 117 1 3 1784 225 0 0 0 chr3 157282460 157282485 -2317298 + (TTTTG)n Simple_repeat Simple_repeat 3 27 0 3 1784 1201 66 0 0 chr3 157282485 157282622 -2317161 - B1_Mus1 SINE Alu -11 137 1 3 1784 1576 47 0 21 chr3 157283448 157283642 -2316141 - L1_Mus1 LINE L1 0 6567 6378 3 1784 213 74 0 100 chr3 157284394 157284454 -2315329 + T-rich Low_complexity Low_complexity 2 55 0 3 1784 982 159 14 0 chr3 157284456 157284601 -2315182 - B1_Mus2 SINE Alu 0 147 1 3 1784 421 319 79 24 chr3 157284676 157284840 -2314943 - B4 SINE B4 -89 203 31 3 1784 501 241 7 21 chr3 157285099 157285123 -2314660 - Lx3_Mus LINE L1 -1089 5920 5899 3 1784 6964 138 42 10 chr3 157285123 157286201 -2313582 - Lx4A LINE L1 -1 7057 5946 3 1784 11416 115 8 39 chr3 157286201 157286361 -2313422 - Lx4A LINE L1 -1160 5898 5773 3 27 2234 90 10 10 chr3 157286361 157286675 -2313108 - L1_Mus3 LINE L1 0 6638 6325 3 1785 11416 110 8 44 chr3 157286675 157288345 -2311438 - Lx4A LINE L1 -105 5772 4126 3 1785 262 277 34 43 chr3 157288384 157288501 -2311282 - Lx8 LINE L1 0 7473 7358 3 1785 513 32 0 0 chr3 157288501 157288564 -2311219 + (CA)n Simple_repeat Simple_repeat 1 63 0 3 1785 1702 264 191 3 chr3 157288572 157289149 -2310634 - Lx8 LINE L1 -292 7181 6497 3 1785 399 251 0 0 chr3 157291750 157291925 -2307858 + (TG)n Simple_repeat Simple_repeat 1 175 0 3 1785 792 311 142 19 chr3 157292640 157293050 -2306733 - MLT1J LTR MaLR -33 479 20 3 1785 189 0 0 0 chr3 157293270 157293291 -2306492 + (T)n Simple_repeat Simple_repeat 1 21 0 3 1785 207 69 0 0 chr3 157293680 157293709 -2306074 + (CACCC)n Simple_repeat Simple_repeat 3 31 0 3 1785 330 45 0 0 chr3 157294444 157294488 -2305295 + (CA)n Simple_repeat Simple_repeat 1 44 0 3 1785 246 200 15 0 chr3 157294681 157294746 -2305037 - Lx7 LINE L1 0 7696 7631 3 1785 365 209 42 35 chr3 157294789 157294933 -2304850 + A-rich Low_complexity Low_complexity 2 146 0 3 1785 861 207 0 0 chr3 157294943 157295093 -2304690 + B1_Mur4 SINE Alu 1 150 0 3 1785 2804 183 65 9 chr3 157295138 157295674 -2304109 - Lx7 LINE L1 -395 7301 6736 3 1785 362 230 45 11 chr3 157295866 157295954 -2303829 + ORR1E LTR MaLR 10 100 -274 3 1785 321 218 24 60 chr3 157296002 157296085 -2303698 + ORR1E LTR MaLR 21 100 -274 3 1785 498 310 115 74 chr3 157296218 157296556 -2303227 - ORR1E LTR MaLR -2 357 6 3 1785 1026 299 48 48 chr3 157296603 157296979 -2302804 - MTEb LTR MaLR -1 378 3 3 1785 476 230 27 38 chr3 157297317 157297449 -2302334 - MTD LTR MaLR -13 406 263 3 1785 545 164 0 8 chr3 157297609 157297726 -2302057 + (TG)n Simple_repeat Simple_repeat 2 117 0 3 1785 684 251 106 6 chr3 157297761 157297941 -2301842 + B3 SINE B2 4 201 -15 3 1785 459 303 6 13 chr3 157297941 157298098 -2301685 + (CATA)n Simple_repeat Simple_repeat 1 156 0 4 1785 2162 33 0 0 chr3 157298098 157298338 -2301445 - L1Md_T LINE L1 -1 6581 6342 4 1785 664 222 148 9 chr3 157298511 157298734 -2301049 - Lx9 LINE L1 0 7644 7391 4 1785 399 149 29 10 chr3 157300296 157300398 -2299385 + C-rich Low_complexity Low_complexity 3 106 0 4 1785 240 320 141 0 chr3 157300505 157300633 -2299150 + MIR3 SINE MIR 42 187 -21 4 1785 209 292 196 0 chr3 157301308 157301449 -2298334 + MIRm SINE MIR 56 228 -34 4 1785 333 234 3 64 chr3 157302008 157302127 -2297656 + L1_Rod LINE L1 4166 4281 -1596 4 1785 279 257 170 20 chr3 157304095 157304242 -2295541 - L2b LINE L2 -236 3139 2971 4 1785 393 340 27 7 chr3 157304631 157304779 -2295004 - LFSINE_Vert SINE SINE -25 434 284 4 1785 379 230 115 0 chr3 157304847 157304960 -2294823 + B4 SINE B4 2 127 -165 4 1785 335 307 44 105 chr3 157304960 157305076 -2294707 + B3 SINE B2 2 216 0 4 1785 24 32 0 0 chr3 157305269 157305300 -2294483 + AT_rich Low_complexity Low_complexity 1 31 0 4 1785 665 199 6 0 chr3 157305384 157305560 -2294223 + (TG)n Simple_repeat Simple_repeat 2 178 0 4 1785 795 253 22 22 chr3 157305561 157305743 -2294040 - B3A SINE B2 -16 182 1 4 1785 186 43 0 0 chr3 157306032 157306055 -2293728 + (TTG)n Simple_repeat Simple_repeat 2 24 0 4 1785 333 0 0 0 chr3 157306059 157306096 -2293687 + (TTAG)n Simple_repeat Simple_repeat 3 39 0 4 1785 366 286 28 9 chr3 157306097 157306203 -2293580 - ID_B1 SINE B4 -14 210 103 4 1785 343 292 125 0 chr3 157306203 157306217 -2293566 - B1F1 SINE Alu -14 135 1 4 1785 1270 54 0 0 chr3 157306599 157306746 -2293037 - B1_Mus2 SINE Alu 0 147 1 4 1785 230 197 29 43 chr3 157309145 157309214 -2290569 - L1MC1 LINE L1 0 6333 6266 4 1785 40458 30 1 6 chr3 157309744 157315925 -2283858 - L1Md_T LINE L1 0 6582 439 4 1785 24 32 0 0 chr3 157316543 157316574 -2283209 + AT_rich Low_complexity Low_complexity 1 31 0 4 1785 363 202 58 0 chr3 157318883 157318987 -2280796 - BC1_Mm scRNA scRNA -24 128 19 4 1785 212 234 59 59 chr3 157318938 157319006 -2280777 - B4 SINE B4 -224 68 1 4 1785 219 316 0 0 chr3 157319606 157319682 -2280101 + MER5A DNA MER1_type 78 153 -36 4 1785 535 307 128 17 chr3 157320234 157320469 -2279314 - MLT1C LTR MaLR -4 463 203 4 1785 321 257 0 75 chr3 157321603 157321683 -2278100 + ID4 SINE ID 4 77 -6 4 1785 198 0 0 0 chr3 157321884 157321906 -2277877 + (CCTA)n Simple_repeat Simple_repeat 1 22 0 4 1785 1095 51 0 0 chr3 157321907 157322045 -2277738 + (TC)n Simple_repeat Simple_repeat 2 139 0 4 1785 333 276 57 9 chr3 157322045 157322151 -2277632 - PB1D10 SINE Alu -5 112 2 4 1785 228 35 0 0 chr3 157324940 157324969 -2274814 + (TCTG)n Simple_repeat Simple_repeat 2 30 0 4 1785 263 202 0 12 chr3 157324972 157325057 -2274726 + (TG)n Simple_repeat Simple_repeat 1 84 0 4 1785 389 101 83 60 chr3 157325070 157325154 -2274629 - HAL1-3A_ME LINE L1 -807 2051 1966 4 1785 183 222 0 27 chr3 157325848 157325885 -2273898 + MIR SINE MIR 20 55 -207 4 1785 264 30 0 0 chr3 157325923 157325956 -2273827 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 4 1785 775 214 164 6 chr3 157326421 157326604 -2273179 - B3 SINE B2 -4 212 1 4 1785 364 240 0 0 chr3 157326686 157326761 -2273022 - B3 SINE B2 -139 77 3 4 1785 367 269 101 50 chr3 157328696 157328915 -2270868 - MLT1B LTR MaLR -69 321 92 4 1785 21 0 0 0 chr3 157329500 157329521 -2270262 + AT_rich Low_complexity Low_complexity 1 21 0 4 1785 719 194 14 0 chr3 157329681 157329820 -2269963 - RLTR25B LTR ERVK 0 1028 888 4 1785 292 132 136 62 chr3 157330126 157330207 -2269576 - RLTR25B LTR ERVK -218 885 799 4 1785 5888 55 9 26 chr3 157330207 157330942 -2268841 - L1Md_F3 LINE L1 0 6584 5862 4 1785 37761 17 3 6 chr3 157330942 157337333 -2262450 - L1Md_A LINE L1 -2 6580 214 4 1785 19548 100 86 9 chr3 157337338 157341693 -2258090 - L1Md_F3 LINE L1 -11 5872 441 4 1785 3437 184 38 35 chr3 157341693 157342430 -2257353 - RLTR25B LTR ERVK -289 739 1 4 1785 24 53 0 0 chr3 157343952 157343990 -2255793 + AT_rich Low_complexity Low_complexity 1 38 0 4 1785 279 182 200 0 chr3 157344000 157344055 -2255728 + ID4_ SINE ID 2 67 -16 4 1785 1677 175 73 3 chr3 157344346 157344673 -2255110 - ORR1B2 LTR MaLR -17 350 1 4 1785 5332 75 3 1 chr3 157345065 157345842 -2253941 - L1_Mus3 LINE L1 0 6638 5944 4 1785 212 215 42 18 chr3 157346523 157346689 -2253094 + CT-rich Low_complexity Low_complexity 2 171 0 4 1785 903 133 103 0 chr3 157348584 157348749 -2251034 + URR1B DNA MER1_type 44 225 0 4 1785 210 342 108 0 chr3 157349532 157349643 -2250140 + MIRc SINE MIR 95 217 -51 4 1785 231 36 0 0 chr3 157350062 157350090 -2249693 + (TTA)n Simple_repeat Simple_repeat 3 30 0 4 1785 235 122 41 0 chr3 157351918 157351967 -2247816 + GA-rich Low_complexity Low_complexity 1 51 0 4 1785 3830 105 13 0 chr3 157352283 157352835 -2246948 - Lx4A LINE L1 -913 6145 5587 4 1785 5181 138 69 29 chr3 157352833 157353652 -2246131 + Lx4A LINE L1 6129 7004 -54 4 1785 4569 8 0 0 chr3 157353652 157354152 -2245631 + L1Md_A LINE L1 6083 6582 0 4 1785 5181 138 69 29 chr3 157354152 157354226 -2245557 + Lx4A LINE L1 7005 7058 0 4 1785 315 0 0 0 chr3 157354274 157354309 -2245474 + (CA)n Simple_repeat Simple_repeat 2 36 0 4 1785 783 169 0 0 chr3 157354898 157355046 -2244737 + CT-rich Low_complexity Low_complexity 3 150 0 4 1785 354 138 0 0 chr3 157355044 157355102 -2244681 + (CTA)n Simple_repeat Simple_repeat 3 60 0 4 1785 864 184 0 0 chr3 157355102 157355243 -2244540 - B1_Mur2 SINE Alu -6 143 3 4 1785 560 128 21 0 chr3 157355594 157355688 -2244095 + ORR1D1 LTR MaLR 1 96 -278 4 1785 22 0 0 0 chr3 157357290 157357312 -2242471 + AT_rich Low_complexity Low_complexity 1 22 0 4 1785 375 320 67 94 chr3 157357551 157357627 -2242156 - LTR16C LTR ERVL -13 476 403 4 1785 1427 69 5 16 chr3 157357627 157357818 -2241965 + B2_Mm1a SINE B2 1 189 -4 4 1785 375 320 67 94 chr3 157357818 157357965 -2241818 - LTR16C LTR ERVL -87 402 259 4 1785 301 312 34 34 chr3 157359986 157360165 -2239618 - L1MC3 LINE L1 -107 7678 7500 4 1785 1271 299 148 22 chr3 157360177 157360290 -2239493 - Lx8 LINE L1 0 7473 7358 4 1785 279 0 0 0 chr3 157360290 157360321 -2239462 + (TG)n Simple_repeat Simple_repeat 2 32 0 4 1785 1271 299 148 22 chr3 157360321 157360788 -2238995 - Lx8 LINE L1 -116 7357 6821 4 1785 639 267 230 12 chr3 157360887 157361300 -2238483 - L1MC3 LINE L1 -402 7383 6881 4 1785 606 179 65 0 chr3 157362101 157362224 -2237559 - B1_Mus2 SINE Alu 0 147 17 4 1785 775 172 7 7 chr3 157362217 157362352 -2237431 + B1_Mus2 SINE Alu 6 140 -7 4 1785 917 241 52 173 chr3 157362418 157362845 -2236938 - MTEb LTR MaLR -4 375 1 4 1785 182 286 52 87 chr3 157362957 157363072 -2236711 - MER5A DNA MER1_type 0 189 79 4 1785 2804 90 95 0 chr3 157363609 157364031 -2235752 - L1_Mus4 LINE L1 -6 6630 6169 4 1785 258 56 0 0 chr3 157364845 157364881 -2234902 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 4 1785 4284 89 24 17 chr3 157364918 157365338 -2234445 - L1_Mus1 LINE L1 0 6567 6139 4 1785 3526 15 5 0 chr3 157365338 157365732 -2234051 - MTA_Mm LTR MaLR 0 396 1 4 1785 9848 11 1 3 chr3 157365732 157366832 -2232951 - MTA_Mm-int LTR MaLR 0 1098 1 4 1785 4618 4 0 0 chr3 157366834 157367327 -2232456 - MT2_Mm LTR ERVL 0 493 1 4 1785 4284 89 24 17 chr3 157367327 157367498 -2232285 - L1_Mus1 LINE L1 -429 6138 5969 4 1785 1091 71 0 0 chr3 157367498 157367638 -2232145 + L1_Mm LINE L1 4895 5034 -849 4 1785 197 33 33 0 chr3 157367649 157367679 -2232104 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 4 1785 1130 58 0 0 chr3 157367679 157367817 -2231966 - B1_Mus2 SINE Alu -9 138 1 4 1785 910 304 67 16 chr3 157368088 157368440 -2231343 - MTE2b LTR MaLR -11 368 22 4 1785 831 134 13 0 chr3 157369714 157369849 -2229934 + L1_Mus3 LINE L1 6280 6389 -249 4 1785 391 287 123 0 chr3 157369927 157370049 -2229734 - ID_B1 SINE B4 -6 218 82 4 1785 279 0 0 0 chr3 157371962 157371993 -2227790 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 4 1785 343 261 116 28 chr3 157374955 157375117 -2224666 - MLT1E1A LTR MaLR -32 648 470 4 1785 407 308 88 19 chr3 157375138 157375343 -2224440 - MLT1E1A LTR MaLR -422 258 40 4 1785 475 233 87 65 chr3 157376133 157376157 -2223626 + B4 SINE B4 69 92 -200 4 1785 4268 70 2 4 chr3 157376157 157376704 -2223079 + L1Md_F2 LINE L1 6025 6570 -12 4 1785 475 233 87 65 chr3 157376704 157376817 -2222966 + B4 SINE B4 93 209 -83 4 1785 1107 117 0 0 chr3 157377550 157377730 -2222053 + (TG)n Simple_repeat Simple_repeat 1 180 0 4 1785 25 0 0 0 chr3 157378228 157378253 -2221530 + AT_rich Low_complexity Low_complexity 1 25 0 4 1785 344 259 147 7 chr3 157382197 157382333 -2217450 + MIR SINE MIR 57 211 -51 4 1785 2104 126 3 6 chr3 157383327 157383639 -2216144 - RLTR10E LTR ERVK 0 311 1 4 1785 1963 181 132 32 chr3 157384505 157384997 -2214786 + Lx9 LINE L1 7104 7644 0 4 1785 21 0 0 0 chr3 157384997 157385018 -2214765 + AT_rich Low_complexity Low_complexity 1 21 0 4 1785 2124 179 31 24 chr3 157385134 157385552 -2214231 + MTC LTR MaLR 1 421 0 4 1785 296 200 12 0 chr3 157386102 157386187 -2213596 + CT-rich Low_complexity Low_complexity 1 86 0 4 1785 2633 116 7 44 chr3 157387898 157388010 -2211773 + MT2B2 LTR ERVL 1 111 -473 4 1785 450 0 0 0 chr3 157388010 157388060 -2211723 + (TTG)n Simple_repeat Simple_repeat 2 51 0 4 1785 1150 44 7 0 chr3 157388060 157388197 -2211586 - B1_Mus2 SINE Alu -8 139 2 4 1785 2800 126 22 42 chr3 157388197 157388537 -2211246 + MT2B2 LTR ERVL 112 444 -140 4 1785 21 0 0 0 chr3 157388935 157388956 -2210827 + AT_rich Low_complexity Low_complexity 1 21 0 4 1785 313 365 51 51 chr3 157388963 157389119 -2210664 - RSINE1 SINE B4 -2 163 8 4 1785 4446 14 0 0 chr3 157389179 157389672 -2210111 - MT2_Mm LTR ERVL 0 493 1 4 1785 1378 168 224 20 chr3 157391460 157391895 -2207888 + RLTR28B LTR ERVL 1 524 0 4 1785 198 171 0 0 chr3 157392002 157392043 -2207740 + T-rich Low_complexity Low_complexity 1 41 0 4 1785 828 185 0 0 chr3 157392125 157392255 -2207528 + B1_Mur4 SINE Alu 14 143 -7 4 1785 288 172 0 0 chr3 157392258 157392345 -2207438 + (CAGA)n Simple_repeat Simple_repeat 2 88 0 5 1785 228 135 0 0 chr3 157392538 157392575 -2207208 + (TCCC)n Simple_repeat Simple_repeat 3 39 0 5 1785 1208 77 6 0 chr3 157393629 157393798 -2205985 + (TTCC)n Simple_repeat Simple_repeat 2 171 0 5 1785 773 230 115 0 chr3 157393801 157393992 -2205791 - B3 SINE B2 -2 214 2 5 1785 252 86 0 0 chr3 157394032 157394067 -2205716 + (T)n Simple_repeat Simple_repeat 1 35 0 5 1785 226 337 60 24 chr3 157394069 157394318 -2205465 + L1MD3 LINE L1 7730 7987 -8 5 1785 736 228 335 0 chr3 157394827 157395088 -2204695 - MTE2b LTR MaLR -8 371 22 5 1785 431 306 17 71 chr3 157396438 157396677 -2203106 - L1M4c LINE L1 -3933 2451 2226 5 1785 443 283 116 55 chr3 157396689 157396835 -2202948 + MTEa LTR MaLR 209 363 -16 5 1785 722 267 120 4 chr3 157396883 157397150 -2202633 - Lx8 LINE L1 -1 7472 7175 5 1785 40 0 0 0 chr3 157397193 157397233 -2202550 + AT_rich Low_complexity Low_complexity 1 40 0 5 1785 369 0 0 0 chr3 157397484 157397525 -2202258 + (CA)n Simple_repeat Simple_repeat 2 42 0 5 1785 261 0 0 0 chr3 157397525 157397553 -2202230 + (TA)n Simple_repeat Simple_repeat 1 29 0 5 1785 270 0 0 0 chr3 157397553 157397582 -2202201 + (GA)n Simple_repeat Simple_repeat 2 31 0 5 1785 396 0 0 0 chr3 157397582 157397625 -2202158 + (TATG)n Simple_repeat Simple_repeat 2 45 0 5 1785 300 314 46 53 chr3 157397658 157397789 -2201994 - B1F2 SINE Alu -17 132 3 5 1785 6619 50 4 4 chr3 157398065 157398870 -2200913 - RLTR13D1 LTR ERVK -1 805 1 5 1785 32 26 0 0 chr3 157398898 157398937 -2200846 + AT_rich Low_complexity Low_complexity 1 39 0 5 1785 1001 276 56 42 chr3 157399510 157399573 -2200210 - B4 SINE B4 -2 290 228 5 1785 747 108 0 0 chr3 157399573 157399684 -2200099 + (TTTC)n Simple_repeat Simple_repeat 3 113 0 5 1785 1001 276 56 42 chr3 157399684 157399904 -2199879 - B4 SINE B4 -65 227 3 5 1785 279 346 47 52 chr3 157401523 157401736 -2198047 - MIR SINE MIR -15 247 36 5 1785 577 293 62 12 chr3 157402697 157402956 -2196827 + L1MA9 LINE L1 5872 6143 -169 5 1785 459 0 0 0 chr3 157402959 157403010 -2196773 + (CA)n Simple_repeat Simple_repeat 2 52 0 5 1785 311 333 49 0 chr3 157403114 157403216 -2196567 + PB1D10 SINE Alu 2 108 -9 5 1785 726 233 6 80 chr3 157404011 157404174 -2195609 + B3A SINE B2 1 151 -47 5 1785 4874 127 12 43 chr3 157404458 157405290 -2194493 - RLTR13D1 LTR ERVK 0 806 1 5 1785 28 29 0 0 chr3 157405394 157405429 -2194354 + AT_rich Low_complexity Low_complexity 1 35 0 5 1785 771 322 29 37 chr3 157405958 157406203 -2193580 + Tigger5 DNA MER2_type 1 243 -2163 5 1785 247 303 44 22 chr3 157406198 157406289 -2193494 + Tigger5 DNA MER2_type 2291 2383 -23 5 1785 1136 62 7 0 chr3 157406498 157406642 -2193141 + B1_Mus1 SINE Alu 3 147 -1 5 1785 325 122 13 13 chr3 157406643 157406718 -2193065 + (CAAAAA)n Simple_repeat Simple_repeat 4 78 0 5 1785 7186 86 7 5 chr3 157406803 157407841 -2191942 - L1_Mus2 LINE L1 -176 5707 4668 5 1785 5955 59 49 13 chr3 157407844 157408636 -2191147 + L1_Mus2 LINE L1 5745 6565 -1 5 1785 186 368 78 9 chr3 157409188 157409303 -2190480 + L4 LINE RTE 1144 1266 -763 5 1785 3492 60 15 64 chr3 157409988 157410506 -2189277 + L1Md_F2 LINE L1 6088 6580 -2 5 1785 982 205 75 5 chr3 157410528 157410729 -2189054 + B3 SINE B2 2 216 0 5 1785 21 36 0 0 chr3 157410735 157410763 -2189020 + AT_rich Low_complexity Low_complexity 1 28 0 5 1785 352 329 158 22 chr3 157410788 157411099 -2188684 + ORR1E LTR MaLR 7 359 0 5 1785 270 56 0 0 chr3 157411669 157411705 -2188078 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 5 1785 580 285 75 130 chr3 157412109 157412416 -2187367 - MTE-int LTR MaLR -1107 473 184 5 1785 618 251 0 0 chr3 157412417 157412709 -2187074 + (TG)n Simple_repeat Simple_repeat 1 292 0 5 1785 1163 262 92 0 chr3 157412709 157413003 -2186780 - MTEa LTR MaLR -9 370 50 5 1785 684 121 0 0 chr3 157413587 157413719 -2186064 + (TC)n Simple_repeat Simple_repeat 1 132 0 5 1785 201 147 0 0 chr3 157414550 157414584 -2185199 + (TTAGGG)n Simple_repeat Simple_repeat 6 39 0 5 1785 580 145 8 8 chr3 157415380 157415498 -2184285 + (TGGA)n Simple_repeat Simple_repeat 4 121 0 5 1785 279 93 0 0 chr3 157416014 157416057 -2183726 + (TTCA)n Simple_repeat Simple_repeat 2 44 0 5 1785 363 169 0 0 chr3 157416092 157416163 -2183620 + CT-rich Low_complexity Low_complexity 3 73 0 5 1785 419 217 75 0 chr3 157416275 157416381 -2183402 - PB1D9 SINE Alu -5 115 2 5 1785 321 314 51 0 chr3 157416883 157417020 -2182763 + MIRb SINE MIR 8 151 -117 5 1786 21 0 0 0 chr3 157417481 157417502 -2182281 + AT_rich Low_complexity Low_complexity 1 21 0 5 1786 228 271 112 75 chr3 157417513 157417701 -2182082 + MIRc SINE MIR 4 212 -56 5 1786 640 303 92 31 chr3 157418885 157419331 -2180452 - L1MA6 LINE L1 -107 6193 5721 5 1786 368 249 73 52 chr3 157419340 157419531 -2180252 - Lx9 LINE L1 -4 7640 7446 5 1786 622 293 118 32 chr3 157419664 157420242 -2179541 - L1MA6 LINE L1 -626 5665 5030 5 1786 310 267 99 169 chr3 157420248 157420591 -2179192 - MER110A LTR ERV1 -110 358 40 5 1786 201 360 28 21 chr3 157420740 157420882 -2178901 + (CAGAGA)n Simple_repeat Simple_repeat 1 143 0 5 1786 193 197 0 32 chr3 157420887 157420950 -2178833 + GA-rich Low_complexity Low_complexity 2 62 0 5 1786 4681 144 25 82 chr3 157420951 157421245 -2178538 - L1_Mur2 LINE L1 -2312 3565 3272 5 1786 1910 136 28 9 chr3 157421245 157421564 -2178219 - ORR1A4 LTR MaLR 0 329 5 5 1786 4681 144 25 82 chr3 157421564 157421635 -2178148 - L1_Mur2 LINE L1 -2606 3271 3244 5 1786 3686 148 28 11 chr3 157421635 157422268 -2177515 - Lx4A LINE L1 0 7058 6415 5 1786 4681 144 25 82 chr3 157422268 157423022 -2176761 - L1_Mur2 LINE L1 -2634 3243 2509 5 1786 817 135 0 0 chr3 157423019 157423152 -2176631 + L1_Mur2 LINE L1 2170 2302 -3575 5 1786 327 161 0 0 chr3 157423157 157423213 -2176570 - L1_Mur2 LINE L1 -3364 2513 2458 5 1786 292 331 44 88 chr3 157423213 157423372 -2176411 - RMER10B LTR ERVL 0 398 247 5 1786 5229 151 20 25 chr3 157423642 157424673 -2175110 - L1_Mur2 LINE L1 -3417 2460 1435 5 1786 1352 77 55 0 chr3 157424935 157425118 -2174665 + B2_Mm1a SINE B2 1 193 0 5 1786 2223 157 24 3 chr3 157425224 157425595 -2174188 - ORR1C2 LTR MaLR -5 379 1 5 1786 333 269 89 36 chr3 157426060 157426172 -2173611 + B1F SINE Alu 23 140 -9 5 1786 192 260 122 20 chr3 157426388 157426486 -2173297 + MIRb SINE MIR 131 238 -30 5 1786 21 0 0 0 chr3 157427296 157427317 -2172466 + AT_rich Low_complexity Low_complexity 1 21 0 5 1786 663 245 35 85 chr3 157427447 157427648 -2172135 + ORR1E LTR MaLR 167 357 -2 5 1786 380 311 52 14 chr3 157427985 157428287 -2171496 + L1MEg LINE L1 1327 1719 -5409 5 1786 466 290 127 3 chr3 157428439 157428723 -2171060 + L1MA6 LINE L1 5966 6284 -16 5 1786 442 324 79 38 chr3 157428776 157429145 -2170638 + L1MEg LINE L1 2263 2646 -4391 5 1786 740 289 77 0 chr3 157429303 157429497 -2170286 + ID_B1 SINE B4 1 209 -15 5 1786 4686 220 85 53 chr3 157429672 157430960 -2168823 + Lx7 LINE L1 6364 7692 -4 5 1786 875 217 32 46 chr3 157430984 157431201 -2168582 + B3 SINE B2 2 215 -1 5 1786 284 200 0 44 chr3 157431262 157431330 -2168453 + PB1D9 SINE Alu 56 120 0 5 1786 4439 172 72 20 chr3 157431372 157432355 -2167428 + Lx9 LINE L1 6602 7635 -9 5 1786 22 35 0 0 chr3 157432438 157432467 -2167316 + AT_rich Low_complexity Low_complexity 1 29 0 5 1786 630 306 62 32 chr3 157432586 157433234 -2166549 + L1MEg LINE L1 3295 3961 -2980 5 1786 1556 145 102 11 chr3 157433305 157433590 -2166193 + ORR1B1 LTR MaLR 41 351 -43 5 1786 3147 58 2 0 chr3 157433590 157434001 -2165782 + L1Md_F3 LINE L1 5175 5586 -297 5 1786 7883 48 7 8 chr3 157434002 157435000 -2164783 + L1Md_F3 LINE L1 5588 6584 0 5 1786 639 0 0 0 chr3 157435048 157435119 -2164664 + (GAAA)n Simple_repeat Simple_repeat 2 72 0 5 1786 276 89 0 0 chr3 157435349 157435394 -2164389 + RMER4B LTR ERVK 17 61 -405 5 1786 474 278 80 83 chr3 157435406 157435743 -2164040 - RLTR15 LTR ERVK -21 338 3 5 1786 1278 217 110 26 chr3 157435743 157436190 -2163593 + RMER4B LTR ERVK 56 578 -7 5 1786 232 226 24 184 chr3 157436367 157436415 -2163368 - MLT1J-int LTR MaLR -114 1273 1238 5 1786 321 194 0 27 chr3 157436415 157436489 -2163294 - ID4 SINE ID -10 73 2 5 1786 232 226 24 184 chr3 157436489 157436565 -2163218 - MLT1J-int LTR MaLR -150 1237 1169 5 1786 8181 80 38 47 chr3 157438069 157439307 -2160476 + Lx3_Mus LINE L1 5783 7009 0 5 1786 279 250 0 0 chr3 157439397 157439449 -2160334 - 5S rRNA rRNA -67 54 3 5 1786 731 231 40 4 chr3 157439449 157439677 -2160106 + Lx5 LINE L1 6097 6345 -705 5 1786 573 273 272 18 chr3 157439711 157440107 -2159676 + Lx5 LINE L1 6507 6678 -372 5 1786 1347 72 0 0 chr3 157440531 157440711 -2159072 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 5 1786 833 190 0 6 chr3 157440717 157440892 -2158891 + GA-rich Low_complexity Low_complexity 1 174 0 5 1786 472 292 73 46 chr3 157441057 157441208 -2158575 - RSINE1 SINE B4 -9 156 2 5 1786 307 322 148 55 chr3 157441249 157441594 -2158189 - MTEa LTR MaLR -2 377 1 5 1786 227 328 24 47 chr3 157441594 157441805 -2157978 + L1MDa LINE L1 213 418 -6215 5 1786 194 0 39 0 chr3 157442389 157442415 -2157368 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 5 1786 236 53 26 0 chr3 157442660 157442698 -2157085 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 5 1786 1236 41 0 0 chr3 157442708 157442855 -2156928 - B1_Mus1 SINE Alu -1 147 1 5 1786 329 264 65 30 chr3 157442927 157443095 -2156688 + L1MDa LINE L1 1106 1279 -5354 5 1786 802 274 115 25 chr3 157443499 157443899 -2155884 + L1MA6 LINE L1 5860 6295 -5 5 1786 311 337 106 26 chr3 157444568 157444757 -2155026 + MIR SINE MIR 21 224 -38 5 1786 662 137 0 15 chr3 157445549 157445682 -2154101 + (TAGA)n Simple_repeat Simple_repeat 4 134 0 5 1786 725 248 170 122 chr3 157445734 157446087 -2153696 - MTEa LTR MaLR -8 371 2 5 1786 1099 267 74 11 chr3 157446230 157446582 -2153201 + Lx8 LINE L1 6751 7124 -349 5 1786 438 53 0 0 chr3 157446982 157447039 -2152744 + (TG)n Simple_repeat Simple_repeat 2 58 0 5 1786 958 213 0 0 chr3 157447039 157447203 -2152580 - B3 SINE B2 -51 165 2 5 1786 225 316 0 17 chr3 157448529 157448587 -2151196 + MLT1H2 LTR MaLR 64 120 -369 5 1786 448 305 116 62 chr3 157448667 157448891 -2150892 - ORR1E LTR MaLR -123 236 1 6 1786 256 344 88 9 chr3 157451233 157451450 -2148333 - L2a LINE L2 -58 3368 3135 6 1786 619 217 50 75 chr3 157451506 157451705 -2148078 + RMER1B Other Other 873 1066 0 6 1786 2393 60 0 0 chr3 157452066 157452399 -2147384 - Lx LINE L1 -784 5870 5538 6 1786 5356 89 58 12 chr3 157452400 157453023 -2146760 + Lx LINE L1 5882 6534 -120 6 1786 342 0 0 0 chr3 157453023 157453061 -2146722 + (TGGG)n Simple_repeat Simple_repeat 1 38 0 6 1786 5356 89 58 12 chr3 157453061 157453176 -2146607 + Lx LINE L1 6535 6653 -1 6 1786 639 212 0 0 chr3 157453654 157453767 -2146016 + PB1D9 SINE Alu 7 119 -1 6 1786 533 290 46 0 chr3 157453886 157454017 -2145766 + RSINE1 SINE B4 1 137 -28 6 1786 556 324 43 39 chr3 157454120 157454206 -2145577 - RMER15 LTR ERVL -18 557 475 6 1786 3216 84 19 2 chr3 157454206 157454621 -2145162 - L1_Mus3 LINE L1 -1 6637 6216 6 1786 556 324 43 39 chr3 157454621 157454791 -2144992 - RMER15 LTR ERVL -101 474 300 6 1786 228 271 36 48 chr3 157454929 157455096 -2144687 + (CACTG)n Simple_repeat Simple_repeat 3 167 0 6 1786 340 243 36 48 chr3 157455119 157455456 -2144327 + (CACTG)n Simple_repeat Simple_repeat 1 332 0 6 1786 261 0 0 0 chr3 157456039 157456068 -2143715 + (A)n Simple_repeat Simple_repeat 1 29 0 6 1786 983 73 0 0 chr3 157456076 157456200 -2143583 + B2_Mm2 SINE B2 1 124 -71 6 1786 516 16 0 0 chr3 157456201 157456262 -2143521 + (TG)n Simple_repeat Simple_repeat 2 62 0 6 1786 1176 109 33 0 chr3 157456864 157457048 -2142735 + URR1A DNA MER1_type 37 226 0 6 1786 788 79 8 0 chr3 157457222 157457348 -2142435 + (TC)n Simple_repeat Simple_repeat 1 127 0 6 1786 364 346 69 42 chr3 157457449 157457666 -2142117 + MLT1E LTR MaLR 391 613 -40 6 1786 229 328 129 62 chr3 157458049 157458420 -2141363 + L2a LINE L2 3013 3408 -18 6 1786 233 57 0 28 chr3 157458801 157458837 -2140946 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 6 1786 201 268 22 44 chr3 157459321 157459376 -2140407 + (TA)n Simple_repeat Simple_repeat 2 54 0 6 1786 195 69 0 0 chr3 157459376 157459405 -2140378 + (TG)n Simple_repeat Simple_repeat 2 30 0 6 1786 201 268 22 44 chr3 157459405 157459439 -2140344 + (TA)n Simple_repeat Simple_repeat 1 35 0 6 1786 246 260 55 0 chr3 157459514 157459587 -2140196 - B1F SINE Alu -55 94 18 6 1786 321 208 0 0 chr3 157459969 157460046 -2139737 + (TA)n Simple_repeat Simple_repeat 1 77 0 6 1786 341 315 0 18 chr3 157460049 157460162 -2139621 + (CATATA)n Simple_repeat Simple_repeat 4 114 0 6 1786 308 273 35 0 chr3 157460262 157460405 -2139378 + (TA)n Simple_repeat Simple_repeat 1 148 0 6 1786 267 169 102 0 chr3 157460654 157460713 -2139070 - L1M3c LINE L1 -5258 883 819 6 1786 251 315 33 0 chr3 157460816 157460908 -2138875 + L1M3c LINE L1 977 1071 -5070 6 1786 296 359 0 17 chr3 157461388 157461507 -2138276 + CT-rich Low_complexity Low_complexity 1 117 0 6 1786 471 291 184 7 chr3 157461515 157461794 -2137989 + LTR53 LTR ERVL 2 329 -190 6 1786 232 330 15 152 chr3 157461943 157462147 -2137636 - MLT1L LTR MaLR -338 272 97 6 1786 271 272 240 31 chr3 157462919 157463048 -2136735 + RSINE1 SINE B4 2 157 -8 6 1786 666 197 0 0 chr3 157463082 157463224 -2136559 + (TA)n Simple_repeat Simple_repeat 1 142 0 6 1786 430 300 125 23 chr3 157463327 157463583 -2136200 + MLT1D LTR MaLR 33 314 -191 6 1786 3084 260 48 27 chr3 157464275 157465129 -2134654 + Lx7 LINE L1 6546 7417 -279 6 1786 29 47 0 0 chr3 157465219 157465262 -2134521 + AT_rich Low_complexity Low_complexity 1 43 0 6 1786 463 310 97 21 chr3 157465537 157465802 -2133981 + MLT1F1 LTR MaLR 174 485 -84 6 1786 1724 171 88 13 chr3 157465802 157466188 -2133595 + RLTR9F LTR ERVK 1 415 0 6 1786 463 309 104 9 chr3 157466188 157466242 -2133541 + MLT1F1 LTR MaLR 486 540 -29 6 1786 3296 176 62 58 chr3 157466959 157467755 -2132028 - RMER1B Other Other 0 1066 187 6 1786 18623 42 4 11 chr3 157468608 157470262 -2129521 - L1Md_F2 LINE L1 -1 6581 4939 6 1786 3805 33 0 5 chr3 157470262 157470691 -2129092 + L1Md_F3 LINE L1 6144 6570 -14 6 1786 18623 57 3 19 chr3 157470691 157472140 -2127643 - L1Md_F2 LINE L1 -945 4938 3519 6 1786 285 202 95 11 chr3 157472417 157472512 -2127271 - MER53 DNA hAT -88 105 3 6 1786 180 280 0 20 chr3 157472728 157472779 -2127004 - L2c LINE L2 -306 3081 3032 6 1786 29 28 0 0 chr3 157472837 157472873 -2126910 + AT_rich Low_complexity Low_complexity 1 36 0 6 1786 254 395 40 30 chr3 157473115 157473316 -2126467 - L2c LINE L2 -805 2614 2412 6 1786 228 350 100 0 chr3 157473346 157473446 -2126337 - L2c LINE L2 -1105 2314 2205 6 1786 5823 212 99 69 chr3 157473531 157473927 -2125856 + Lx9 LINE L1 5798 6311 -1333 6 1786 2947 80 2 23 chr3 157473927 157474063 -2125720 + L1Md_F2 LINE L1 6189 6324 -258 6 1786 3810 15 0 0 chr3 157474063 157474459 -2125324 - MTA_Mm LTR MaLR 0 396 1 6 1786 2947 80 2 23 chr3 157474459 157474717 -2125066 + L1Md_F2 LINE L1 6325 6575 -7 6 1786 5823 212 99 69 chr3 157474717 157475013 -2124770 + Lx9 LINE L1 6312 6607 -1037 6 1786 860 172 15 0 chr3 157475013 157475147 -2124636 + B1_Mus1 SINE Alu 3 138 -10 6 1786 725 67 0 9 chr3 157475147 157475252 -2124531 + (GAAA)n Simple_repeat Simple_repeat 2 105 0 6 1786 5823 212 99 69 chr3 157475252 157476195 -2123588 + Lx9 LINE L1 6608 7484 -160 6 1786 225 328 230 21 chr3 157476380 157476567 -2123216 - L2c LINE L2 -1365 2054 1829 6 1786 628 274 175 13 chr3 157477865 157478179 -2121604 - L1ME1 LINE L1 -141 6038 5674 6 1786 335 42 0 40 chr3 157478225 157478275 -2121508 + (TCCA)n Simple_repeat Simple_repeat 3 50 0 6 1786 400 324 0 0 chr3 157478284 157478392 -2121391 - PB1D9 SINE Alu -8 112 5 6 1786 21 57 0 0 chr3 157478587 157478622 -2121161 + AT_rich Low_complexity Low_complexity 1 35 0 6 1786 832 140 56 0 chr3 157478765 157478908 -2120875 - L1_Mur1 LINE L1 -640 5237 5087 6 1786 736 71 0 0 chr3 157478908 157479006 -2120777 + MTB_Mm LTR MaLR 3 100 -307 6 1786 1673 126 38 7 chr3 157479008 157479295 -2120488 - L1_Mur1 LINE L1 -1853 4033 3738 6 1786 3982 90 17 24 chr3 157479302 157479894 -2119889 - RLTR19-int LTR ERVK -4121 2016 1429 6 1786 419 333 0 0 chr3 157479942 157480113 -2119670 + (CCA)n Simple_repeat Simple_repeat 1 171 0 6 1786 4072 129 15 1 chr3 157480786 157481447 -2118336 - L1_Mur1 LINE L1 -2136 3750 3081 6 1786 9181 135 17 40 chr3 157481443 157482036 -2117747 + Lx2B LINE L1 5191 5797 -1203 6 1786 1166 89 0 0 chr3 157482036 157482182 -2117601 + B1_Mm SINE Alu 2 147 0 6 1786 9181 110 28 36 chr3 157482182 157483398 -2116385 + Lx2B LINE L1 5798 6998 -2 6 1786 288 233 46 15 chr3 157484206 157484337 -2115446 + L1M2 LINE L1 1897 2031 -4818 6 1786 921 106 14 41 chr3 157484381 157484528 -2115255 + B1_Mus1 SINE Alu 6 148 0 6 1786 310 312 29 21 chr3 157484538 157484777 -2115006 + L1_Mur3 LINE L1 1408 1648 -4232 6 1786 561 184 55 0 chr3 157484868 157484977 -2114806 + PB1D7 SINE Alu 1 115 -5 6 1786 286 330 61 10 chr3 157485691 157485789 -2113994 - MIR3 SINE MIR -17 191 89 6 1786 5406 88 8 26 chr3 157486278 157487002 -2112781 - L1Md_F2 LINE L1 -6 6576 5866 6 1786 3701 43 0 0 chr3 157487002 157487442 -2112341 + L1Md_F2 LINE L1 5146 5585 -298 6 1786 8857 34 2 8 chr3 157487443 157488442 -2111341 + L1Md_F2 LINE L1 5587 6579 -3 6 1786 3645 55 0 0 chr3 157488447 157488884 -2110899 + L1_Mm LINE L1 5447 5883 0 6 1786 2600 95 3 9 chr3 157489180 157489509 -2110274 + ORR1A2 LTR MaLR 1 327 0 6 1786 424 253 0 12 chr3 157490447 157490531 -2109252 + B3 SINE B2 1 83 -133 6 1786 221 340 50 50 chr3 157490531 157490546 -2109237 + RSINE1 SINE B4 2 100 -65 6 1786 203 362 0 0 chr3 157490673 157490742 -2109041 + GA-rich Low_complexity Low_complexity 5 73 0 6 1786 3427 236 139 22 chr3 157490853 157491811 -2107972 + RMER1B Other Other 71 957 -109 6 1786 419 52 0 17 chr3 157491811 157491870 -2107913 + (TTTTA)n Simple_repeat Simple_repeat 3 60 0 6 1786 3427 214 141 29 chr3 157491870 157491953 -2107830 + RMER1B Other Other 958 1042 -24 6 1786 1135 57 0 0 chr3 157492249 157492389 -2107394 + B1_Mus1 SINE Alu 9 148 0 6 1786 534 200 0 104 chr3 157492427 157492561 -2107222 + PB1D9 SINE Alu 1 120 0 6 1786 582 245 124 19 chr3 157492810 157493120 -2106663 + L1_Mur3 LINE L1 5459 5819 -61 6 1786 325 82 49 0 chr3 157493207 157493268 -2106515 + (CATA)n Simple_repeat Simple_repeat 3 66 0 6 1786 422 188 149 18 chr3 157493406 157493520 -2106263 - RMER12 LTR ERVK -5 1317 1189 6 1786 364 257 47 165 chr3 157493506 157493540 -2106243 - RMER12 LTR ERVK -224 1348 1315 6 1786 4234 39 45 2 chr3 157493540 157494030 -2105753 + L1Md_T LINE L1 6072 6582 0 6 1786 4503 159 23 87 chr3 157494030 157495126 -2104657 - RMER12 LTR ERVK -258 1314 1 6 1786 231 333 38 68 chr3 157495244 157495376 -2104407 - MLT1J LTR MaLR -316 196 69 6 1786 406 298 87 9 chr3 157496513 157496628 -2103155 + B3A SINE B2 2 125 -73 6 1786 812 62 48 0 chr3 157496675 157496820 -2102963 + (TC)n Simple_repeat Simple_repeat 1 152 0 6 1786 28 29 0 0 chr3 157498122 157498157 -2101626 + AT_rich Low_complexity Low_complexity 1 35 0 6 1786 595 298 91 49 chr3 157498300 157498596 -2101187 + B4 SINE B4 2 269 -23 6 1786 342 0 0 0 chr3 157499575 157499613 -2100170 + (TC)n Simple_repeat Simple_repeat 1 38 0 6 1786 519 17 0 0 chr3 157499613 157499672 -2100111 + (CA)n Simple_repeat Simple_repeat 1 60 0 6 1786 23 0 0 0 chr3 157500107 157500130 -2099653 + AT_rich Low_complexity Low_complexity 1 23 0 1 1786 215 233 76 76 chr3 157500140 157500219 -2099564 + MER5B DNA MER1_type 100 178 0 2 1786 281 311 65 43 chr3 157500669 157500807 -2098976 - MER110 LTR ERV1 0 491 351 3 1786 207 69 0 0 chr3 157501289 157501318 -2098465 + (TAGG)n Simple_repeat Simple_repeat 2 30 0 4 1786 239 150 73 24 chr3 157501327 157501409 -2098374 + (TAGA)n Simple_repeat Simple_repeat 4 89 0 5 1786 1732 37 0 0 chr3 157501477 157501668 -2098115 + B2_Mm1t SINE B2 1 191 -2 6 1786 396 192 71 12 chr3 157501683 157501852 -2097931 + (TAGA)n Simple_repeat Simple_repeat 2 180 0 7 1786 1040 255 34 58 chr3 157502007 157502386 -2097397 + L1MC LINE L1 4616 4985 -1161 8 1786 458 157 0 15 chr3 157506183 157506319 -2093464 + (TCTCTG)n Simple_repeat Simple_repeat 2 135 0 9 1786 250 294 165 0 chr3 157506379 157506505 -2093278 - MIRb SINE MIR -72 196 46 1 1786 294 191 22 22 chr3 157506667 157506801 -2092982 + (TA)n Simple_repeat Simple_repeat 2 135 0 1 1786 423 0 0 0 chr3 157506819 157506866 -2092917 + (TAGA)n Simple_repeat Simple_repeat 4 50 0 1 1786 806 216 0 0 chr3 157506961 157507100 -2092683 - B1_Mur1 SINE Alu -7 142 4 1 1786 1393 82 43 0 chr3 157507166 157507350 -2092433 + B2_Mm1t SINE B2 1 192 -1 1 1786 791 254 41 31 chr3 157507643 157507838 -2091945 + B3A SINE B2 2 198 0 1 1786 312 210 0 0 chr3 157507986 157508067 -2091716 + (TG)n Simple_repeat Simple_repeat 2 82 0 1 1786 1059 272 62 0 chr3 157508070 157508342 -2091441 - B4 SINE B4 0 292 4 1 1786 1500 151 4 0 chr3 157508446 157508684 -2091099 - L1_Mm LINE L1 -218 5665 5427 1 1786 1152 133 22 0 chr3 157508689 157508870 -2090913 - L1_Mur1 LINE L1 -725 5161 4977 1 1786 3567 116 80 0 chr3 157508870 157509380 -2090403 + Lx2 LINE L1 6440 6990 -7 2 1786 5846 78 7 0 chr3 157509379 157510095 -2089688 + Lx3_Mus LINE L1 6289 7009 0 2 1786 22 0 0 0 chr3 157510095 157510117 -2089666 + AT_rich Low_complexity Low_complexity 1 22 0 2 1786 1181 79 7 0 chr3 157510118 157510258 -2089525 + B1_Mm SINE Alu 1 141 -6 2 1786 195 42 0 0 chr3 157510260 157510284 -2089499 + (TTAA)n Simple_repeat Simple_repeat 4 27 0 2 1786 251 314 96 48 chr3 157510660 157510827 -2088956 + L2a LINE L2 3094 3268 -158 2 1786 301 272 12 12 chr3 157510849 157510931 -2088852 + L2a LINE L2 3345 3426 0 2 1786 4621 125 77 76 chr3 157511453 157511763 -2088020 + RMER17A2 LTR ERVK 1 370 -536 2 1786 297 0 0 0 chr3 157511763 157511796 -2087987 + (TC)n Simple_repeat Simple_repeat 1 33 0 2 1786 4621 125 77 76 chr3 157511796 157512378 -2087405 + RMER17A2 LTR ERVK 371 893 -13 2 1786 574 136 204 0 chr3 157513563 157513666 -2086117 + URR1A DNA MER1_type 7 130 -96 2 1786 984 102 215 48 chr3 157513663 157513849 -2085934 + URR1A DNA MER1_type 10 226 0 2 1786 658 212 150 38 chr3 157514094 157514293 -2085490 + B3A SINE B2 1 192 -6 2 1786 260 140 0 95 chr3 157515598 157515661 -2084122 - RMER16-int LTR ERVK -2761 2645 2589 3 1786 1152 179 28 24 chr3 157516146 157516358 -2083425 - B3 SINE B2 0 216 4 3 1786 687 203 20 34 chr3 157516601 157516749 -2083034 + B1_Mur1 SINE Alu 4 149 0 3 1786 351 301 42 12 chr3 157517240 157517405 -2082378 - L1MCa LINE L1 -3855 2466 2297 3 1786 1328 258 61 64 chr3 157517406 157517783 -2082000 + MTEa LTR MaLR 1 376 -3 3 1786 347 286 71 38 chr3 157517833 157517844 -2081939 - L1MCa LINE L1 -4230 2278 2268 3 1786 198 0 0 0 chr3 157517844 157517866 -2081917 + (TTGG)n Simple_repeat Simple_repeat 2 23 0 3 1786 347 286 71 38 chr3 157517866 157518065 -2081718 - L1MCa LINE L1 -4241 2267 2062 3 1786 769 189 84 18 chr3 157518241 157518408 -2081375 + B2_Mm2 SINE B2 13 190 -5 3 1786 210 118 0 0 chr3 157518493 157518527 -2081256 + (GTTTG)n Simple_repeat Simple_repeat 1 34 0 3 1786 355 233 86 72 chr3 157518529 157518751 -2081032 - L1MCa LINE L1 -5027 1481 1257 3 1786 2545 270 101 85 chr3 157518780 157519555 -2080228 + Tigger1 DNA MER2_type 26 876 -1542 3 1786 1192 62 14 0 chr3 157519555 157519700 -2080083 + B1_Mus1 SINE Alu 2 148 0 3 1786 2545 270 101 85 chr3 157519700 157520038 -2079745 + Tigger1 DNA MER2_type 877 1156 -1262 3 1786 3159 70 22 2 chr3 157520038 157520441 -2079342 + L1_Mus3 LINE L1 6225 6635 -3 4 1786 1242 150 5 10 chr3 157520443 157520652 -2079131 + L1_Mur2 LINE L1 5128 5335 -542 4 1786 265 279 15 0 chr3 157521277 157521345 -2078438 + B4 SINE B4 6 74 -218 4 1786 501 17 0 0 chr3 157521345 157521403 -2078380 + (CA)n Simple_repeat Simple_repeat 1 58 0 4 1786 1415 80 6 6 chr3 157521427 157521603 -2078180 + B2_Mm1t SINE B2 1 176 -17 4 1786 479 155 0 10 chr3 157521606 157521710 -2078073 + (TA)n Simple_repeat Simple_repeat 1 103 0 4 1786 889 258 133 70 chr3 157521972 157522058 -2077725 + B4 SINE B4 1 84 -208 4 1786 1017 191 95 0 chr3 157522058 157522247 -2077536 + B3 SINE B2 4 210 -6 4 1786 889 258 133 70 chr3 157522247 157522431 -2077352 + B4 SINE B4 85 288 -4 4 1786 300 239 131 41 chr3 157522455 157522577 -2077206 - L1M5 LINE L1 -2931 3215 3083 4 1786 393 355 68 4 chr3 157522986 157523252 -2076531 + Helitron1Nb_Mam RC Helitron 123 405 -711 4 1786 452 255 9 36 chr3 157523254 157523364 -2076419 + B1_Mur2 SINE Alu 1 107 -42 5 1786 620 315 38 74 chr3 157524334 157524700 -2075083 - RLTR26 LTR ERVK -212 430 41 5 1786 223 275 58 81 chr3 157524739 157524822 -2074961 - ID2 SINE ID -39 113 34 5 1786 2248 164 78 14 chr3 157524822 157525192 -2074591 + ORR1B1 LTR MaLR 1 394 0 5 1786 223 254 55 82 chr3 157525192 157525221 -2074562 - ID2 SINE ID -50 33 3 5 1786 240 287 124 20 chr3 157525344 157525497 -2074286 + HAL1b LINE L1 976 1144 -865 5 1786 310 281 66 8 chr3 157525974 157526096 -2073687 + HAL1b LINE L1 1619 1747 -262 5 1786 1017 215 47 0 chr3 157526100 157526291 -2073492 + B3 SINE B2 1 200 -16 5 1786 293 0 27 0 chr3 157526291 157526328 -2073455 + (TAAAA)n Simple_repeat Simple_repeat 5 42 0 5 1786 574 223 84 8 chr3 157526342 157526473 -2073310 + B1_Mm SINE Alu 2 142 -5 5 1786 283 228 0 42 chr3 157526559 157526655 -2073128 + Lx6 LINE L1 7343 7434 -26 5 1786 545 181 197 49 chr3 157526788 157526910 -2072873 + B1_Mur2 SINE Alu 2 141 -8 5 1786 378 0 0 0 chr3 157526922 157526964 -2072819 + (GA)n Simple_repeat Simple_repeat 1 42 0 6 1786 663 291 117 46 chr3 157527080 157527516 -2072267 + MER110A LTR ERV1 2 468 0 6 1786 1240 188 10 5 chr3 157527608 157527816 -2071967 + B3 SINE B2 2 210 -6 6 1786 21 36 0 0 chr3 157527817 157527845 -2071938 + AT_rich Low_complexity Low_complexity 1 28 0 6 1786 1298 166 32 45 chr3 157528235 157528481 -2071302 - RLTR20B3 LTR ERVK -9 568 326 6 1786 267 206 14 87 chr3 157528485 157528554 -2071229 + RLTR20B3 LTR ERVK 505 568 -9 6 1786 226 240 0 0 chr3 157528599 157528649 -2071134 - L1VL2 LINE L1 -6053 282 233 6 1786 735 110 21 62 chr3 157528649 157528794 -2070989 + L1_Mus3 LINE L1 6500 6638 0 6 1786 306 282 108 9 chr3 157530119 157530230 -2069553 + ID_B1 SINE B4 73 194 -30 6 1786 319 273 26 0 chr3 157530232 157530309 -2069474 + ID4 SINE ID 5 83 0 6 1786 913 188 0 0 chr3 157530387 157530531 -2069252 + B1_Mus1 SINE Alu 4 147 -1 7 1786 731 169 108 0 chr3 157530608 157530738 -2069045 - B1_Mur2 SINE Alu -5 144 1 7 1786 1384 101 16 5 chr3 157532458 157532647 -2067136 - B2_Mm1t SINE B2 -2 191 1 7 1786 24 32 0 0 chr3 157533175 157533206 -2066577 + AT_rich Low_complexity Low_complexity 1 31 0 7 1786 573 242 58 45 chr3 157533436 157533592 -2066191 + RSINE1 SINE B4 4 161 -4 7 1786 209 33 33 0 chr3 157533607 157533637 -2066146 + (ATG)n Simple_repeat Simple_repeat 3 33 0 7 1786 1256 124 23 0 chr3 157533762 157533939 -2065844 + B2_Mm2 SINE B2 1 181 -14 7 1786 518 71 360 10 chr3 157533967 157534067 -2065716 + B2_Mm2 SINE B2 47 181 -14 7 1786 939 65 0 0 chr3 157534067 157534190 -2065593 + (GAAA)n Simple_repeat Simple_repeat 3 125 0 7 1786 456 155 0 0 chr3 157534573 157534644 -2065139 + B1_Mus2 SINE Alu 58 128 -19 7 1786 1277 48 7 0 chr3 157534996 157535143 -2064640 + B1_Mus1 SINE Alu 1 148 0 8 1786 483 276 76 65 chr3 157535157 157535432 -2064351 + MLT1A0 LTR MaLR 10 287 -78 8 1786 593 270 26 42 chr3 157535486 157535679 -2064104 + MTE2a LTR MaLR 177 366 -13 8 1786 489 308 128 57 chr3 157536473 157536613 -2063170 + B4 SINE B4 50 182 -110 8 1786 896 241 9 76 chr3 157536613 157536837 -2062946 + B3 SINE B2 1 209 -7 8 1786 489 308 128 57 chr3 157536837 157536923 -2062860 + B4 SINE B4 183 292 0 8 1786 418 177 37 37 chr3 157537162 157537244 -2062539 - B3 SINE B2 -134 82 1 8 1786 697 204 53 33 chr3 157537288 157537440 -2062343 - RSINE1 SINE B4 0 165 11 8 1786 1310 130 0 55 chr3 157537519 157537617 -2062166 - ORR1A2 LTR MaLR -2 325 238 8 1786 6127 22 3 3 chr3 157537617 157538289 -2061494 + L1Md_F2 LINE L1 5911 6582 0 8 1786 1310 130 0 55 chr3 157538289 157538409 -2061374 - ORR1A2 LTR MaLR -90 237 119 8 1786 492 194 96 11 chr3 157538438 157538532 -2061251 - ID_B1 SINE B4 -14 210 109 8 1786 335 253 45 11 chr3 157538456 157538544 -2061239 - PB1D7 SINE Alu -15 105 15 9 1786 534 119 0 0 chr3 157539209 157539293 -2060490 + (TGGA)n Simple_repeat Simple_repeat 3 86 0 9 1786 221 368 47 16 chr3 157539426 157539553 -2060230 + MER5A DNA MER1_type 5 135 -54 9 1786 519 123 0 0 chr3 157540052 157540133 -2059650 + (TTTTC)n Simple_repeat Simple_repeat 5 85 0 9 1786 2453 162 177 2 chr3 157541312 157541764 -2058019 - MT2A LTR ERVL 0 533 3 9 1786 581 252 47 13 chr3 157541773 157541922 -2057861 + B3 SINE B2 42 195 -21 9 1786 396 0 0 0 chr3 157541929 157541973 -2057810 + (TAA)n Simple_repeat Simple_repeat 2 45 0 9 1786 314 330 161 27 chr3 157542052 157542164 -2057619 - RSINE1 SINE B4 -28 137 11 9 1786 948 233 28 5 chr3 157542719 157542930 -2056853 + B3 SINE B2 1 216 0 9 1786 339 314 35 21 chr3 157543191 157543334 -2056449 + MLT1A1 LTR MaLR 264 408 0 9 1786 182 303 29 39 chr3 157544116 157544219 -2055564 - L2c LINE L2 -355 3032 2931 1 1786 951 151 7 7 chr3 157544344 157544491 -2055292 - B1_Mur2 SINE Alu -1 148 2 1 1786 1885 170 64 25 chr3 157544545 157544938 -2054845 - RMER17C LTR ERVK -2 408 1 1 1786 475 221 9 28 chr3 157546351 157546458 -2053325 + PB1D10 SINE Alu 1 105 -12 1 1786 884 106 15 0 chr3 157546458 157546590 -2053193 + L1_Mus3 LINE L1 6459 6592 -46 1 1786 1217 222 167 15 chr3 157546778 157547102 -2052681 + MTEb LTR MaLR 7 379 0 1 1786 1630 309 63 58 chr3 157547639 157547759 -2052024 - Lx8 LINE L1 -6 7467 7319 1 1786 885 163 59 24 chr3 157547759 157547929 -2051854 + B2_Mm2 SINE B2 3 178 -17 1 1786 1630 309 63 58 chr3 157547929 157548020 -2051763 - Lx8 LINE L1 -155 7318 7257 1 1786 1181 77 0 0 chr3 157548020 157548163 -2051620 - B1_Mm SINE Alu -3 144 2 1 223 1630 309 63 58 chr3 157548163 157548754 -2051029 - Lx8 LINE L1 -217 7256 6662 1 1787 633 300 93 19 chr3 157548755 157548969 -2050814 + B4A SINE B4 63 292 0 1 1787 207 0 0 0 chr3 157549018 157549041 -2050742 + (GAA)n Simple_repeat Simple_repeat 1 23 0 1 1787 1028 103 17 6 chr3 157549041 157549216 -2050567 + (GGA)n Simple_repeat Simple_repeat 3 179 0 1 1787 299 259 37 75 chr3 157550692 157550808 -2048975 - PB1D10 SINE Alu 0 120 1 1 1787 324 233 13 64 chr3 157550851 157550929 -2048854 - ID2 SINE ID -8 75 2 1 1787 761 259 6 0 chr3 157551175 157551337 -2048446 - ID_B1 SINE B4 -47 177 15 1 1787 457 214 88 88 chr3 157551954 157552113 -2047670 + MLT1A LTR MaLR 1 159 -215 1 1787 366 248 50 28 chr3 157552311 157552452 -2047331 + GA-rich Low_complexity Low_complexity 3 146 0 1 1787 387 0 0 0 chr3 157552939 157552982 -2046801 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 1 1787 306 299 0 0 chr3 157552982 157553049 -2046734 - ID4_ SINE ID -7 76 10 1 1787 473 44 15 0 chr3 157553069 157553137 -2046646 + (TG)n Simple_repeat Simple_repeat 2 70 0 1 1787 2345 193 100 134 chr3 157553157 157553525 -2046258 + RMER12 LTR ERVK 33 365 -957 1 1787 1298 41 0 0 chr3 157553525 157553672 -2046111 + B1_Mm SINE Alu 1 147 0 1 1787 2345 196 106 137 chr3 157553672 157554189 -2045594 + RMER12 LTR ERVK 366 1293 -279 1 1787 303 71 0 0 chr3 157554189 157554231 -2045552 + (TATG)n Simple_repeat Simple_repeat 3 44 0 1 1787 557 220 174 165 chr3 157554231 157554304 -2045479 + RMER12 LTR ERVK 1294 1314 -258 1 1787 423 0 0 0 chr3 157554304 157554351 -2045432 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 1787 557 220 174 165 chr3 157554351 157554559 -2045224 + RMER12 LTR ERVK 1315 1572 0 1 1787 351 244 32 43 chr3 157554559 157554649 -2045134 - B1_Mur1 SINE Alu -18 131 43 1 1787 23 33 0 0 chr3 157554707 157554737 -2045046 + AT_rich Low_complexity Low_complexity 1 30 0 1 1787 441 0 0 0 chr3 157554737 157554786 -2044997 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 1787 962 284 13 106 chr3 157554816 157554879 -2044904 - B4A SINE B4 -10 282 228 1 1787 1184 107 44 27 chr3 157554879 157555062 -2044721 - B2_Mm2 SINE B2 -8 187 2 1 1787 962 284 13 106 chr3 157555062 157555211 -2044572 - B4A SINE B4 -65 227 97 1 1787 222 62 0 0 chr3 157555211 157555243 -2044540 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 1 1787 1048 110 0 0 chr3 157555243 157555379 -2044404 - B1_Mus1 SINE Alu -8 140 5 1 1787 962 284 13 106 chr3 157555379 157555475 -2044308 - B4A SINE B4 -196 96 2 1 1787 521 181 101 53 chr3 157555501 157555670 -2044113 + Lx3B LINE L1 6796 6972 -1 1 1787 366 80 0 0 chr3 157555687 157555737 -2044046 + (GGGA)n Simple_repeat Simple_repeat 4 53 0 1 1787 1885 184 77 11 chr3 157555970 157556349 -2043434 - MTD LTR MaLR -14 405 2 1 1787 222 37 0 0 chr3 157556388 157556415 -2043368 + (T)n Simple_repeat Simple_repeat 1 27 0 1 1787 614 12 37 0 chr3 157556430 157556511 -2043272 - L1Md_T LINE L1 0 6582 6499 1 1787 28 0 0 0 chr3 157557906 157557934 -2041849 + AT_rich Low_complexity Low_complexity 1 28 0 1 1787 6641 182 73 34 chr3 157558309 157559948 -2039835 + Lx7 LINE L1 5335 7040 -656 1 1787 660 231 51 23 chr3 157559946 157560123 -2039660 + Lx7 LINE L1 7515 7696 0 1 1787 643 234 6 47 chr3 157561178 157561348 -2038435 - RSINE1 SINE B4 0 165 3 1 1787 1103 244 91 51 chr3 157561377 157561508 -2038275 + MTD LTR MaLR 25 159 -260 1 1787 252 0 0 0 chr3 157561508 157561536 -2038247 + (TG)n Simple_repeat Simple_repeat 2 29 0 1 1787 1103 244 91 51 chr3 157561536 157561776 -2038007 + MTD LTR MaLR 160 411 -8 1 1787 692 196 7 14 chr3 157562098 157562243 -2037540 + B1_Mur4 SINE Alu 5 148 -2 1 1787 195 42 0 0 chr3 157562339 157562363 -2037420 + (TTG)n Simple_repeat Simple_repeat 2 25 0 1 1787 650 184 48 0 chr3 157562363 157562488 -2037295 - B1_Mur2 SINE Alu -9 140 10 1 1787 24 0 0 0 chr3 157562501 157562525 -2037258 + AT_rich Low_complexity Low_complexity 1 24 0 1 1787 783 129 19 25 chr3 157562547 157562706 -2037077 - Lx7 LINE L1 -149 7547 7390 1 1787 423 0 0 0 chr3 157562707 157562754 -2037029 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 1787 232 269 55 7 chr3 157562765 157562803 -2036980 + ORR1B1-int LTR MaLR 602 646 -863 1 1787 935 72 0 0 chr3 157562803 157562928 -2036855 + B1_Mus1 SINE Alu 1 125 -23 1 1787 288 207 52 0 chr3 157562928 157562986 -2036797 - Lx7 LINE L1 -364 7332 7272 1 1787 279 281 10 40 chr3 157563203 157563303 -2036480 + GA-rich Low_complexity Low_complexity 3 99 0 1 1787 1357 74 6 6 chr3 157563438 157563614 -2036169 + B2_Mm2 SINE B2 2 177 -18 1 1787 2440 144 37 12 chr3 157563636 157564045 -2035738 + MTC LTR MaLR 1 419 -2 1 1787 1605 244 0 37 chr3 157564956 157565331 -2034452 + RMER12B LTR ERVK 14 374 -1030 1 1787 595 270 205 20 chr3 157565338 157565640 -2034143 + RMER12B LTR ERVK 501 858 -546 1 1787 345 236 55 93 chr3 157565729 157565911 -2033872 + RMER12 LTR ERVK 568 742 -580 1 1787 231 36 0 0 chr3 157565942 157565970 -2033813 + (TG)n Simple_repeat Simple_repeat 1 28 0 1 1787 581 214 186 36 chr3 157565970 157566164 -2033619 + RMER12B LTR ERVK 993 1215 -107 1 1787 585 281 0 123 chr3 157566223 157566331 -2033452 - B4A SINE B4 -100 192 97 1 1787 230 0 33 0 chr3 157566331 157566361 -2033422 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1 1787 585 281 0 123 chr3 157566361 157566374 -2033409 - B4A SINE B4 -196 96 96 1 1787 1206 41 0 26 chr3 157566374 157566525 -2033258 - B1_Mm SINE Alu 0 147 1 1 1787 585 281 0 123 chr3 157566525 157566621 -2033162 - B4A SINE B4 -196 96 1 1 1787 1982 184 117 21 chr3 157567164 157567538 -2032245 + RMER5 LTR ERV1 1 391 -143 1 1787 2548 59 71 0 chr3 157567538 157567861 -2031922 + ORR1A1 LTR MaLR 1 346 0 1 1787 1982 184 117 21 chr3 157567861 157567964 -2031819 + RMER5 LTR ERV1 392 524 -10 1 1787 439 188 12 0 chr3 157568393 157568473 -2031310 + PB1D9 SINE Alu 28 108 -12 1 1787 310 278 14 0 chr3 157568492 157568564 -2031219 + ID4_ SINE ID 8 80 -3 1 1787 27 0 0 0 chr3 157568612 157568639 -2031144 + AT_rich Low_complexity Low_complexity 1 27 0 1 1787 645 203 43 29 chr3 157570864 157571051 -2028732 - B3A SINE B2 0 195 11 1 1787 538 121 148 20 chr3 157571350 157571451 -2028332 + PB1D9 SINE Alu 2 115 -5 1 1787 300 213 26 34 chr3 157571527 157571608 -2028175 - B1F1 SINE Alu -1 148 43 1 1787 384 210 65 24 chr3 157571633 157571726 -2028057 - B1_Mur4 SINE Alu -1 119 31 1 1787 2598 152 88 155 chr3 157572009 157572396 -2027387 + RMER12 LTR ERVK 1 426 -896 1 1787 581 115 0 9 chr3 157572396 157572501 -2027282 + L1_Mus3 LINE L1 6535 6638 0 1 1787 2598 152 88 155 chr3 157572501 157572908 -2026875 + RMER12 LTR ERVK 427 742 -580 1 1787 850 174 7 262 chr3 157572922 157573326 -2026457 + RMER12 LTR ERVK 975 1275 -47 1 1787 386 278 78 9 chr3 157573582 157573698 -2026085 + ID_B1 SINE B4 80 203 -21 1 1787 347 274 17 26 chr3 157574513 157574629 -2025154 + RSINE1 SINE B4 51 165 0 1 1787 1011 161 0 0 chr3 157574657 157574837 -2024946 + (CA)n Simple_repeat Simple_repeat 1 180 0 1 1787 468 302 47 0 chr3 157575031 157575203 -2024580 + MLT1A0 LTR MaLR 2 181 -184 1 1787 2102 160 68 10 chr3 157575897 157576295 -2023488 - MTC LTR MaLR 0 421 1 1 1787 1036 45 0 0 chr3 157576963 157577098 -2022685 + L1Md_A LINE L1 5447 5586 -297 1 1787 8942 16 0 0 chr3 157577098 157578093 -2021690 + L1Md_A LINE L1 5587 6581 -1 1 1787 547 232 135 22 chr3 157578093 157578142 -2021641 + L1MD LINE L1 5624 5676 -683 1 1787 424 278 32 146 chr3 157578183 157578368 -2021415 + ID_B1 SINE B4 5 168 -56 1 1787 714 219 124 10 chr3 157578853 157579047 -2020736 + B3 SINE B2 1 216 0 1 1787 1192 48 7 0 chr3 157579665 157579810 -2019973 + B1_Mus2 SINE Alu 2 147 0 1 1787 504 0 0 0 chr3 157580178 157580234 -2019549 + (TC)n Simple_repeat Simple_repeat 1 56 0 1 1787 786 266 28 17 chr3 157580291 157580467 -2019316 - B3A SINE B2 -18 180 3 1 1787 437 60 0 43 chr3 157580501 157580571 -2019212 + (TTTG)n Simple_repeat Simple_repeat 2 68 0 1 1787 1082 79 0 0 chr3 157580571 157580710 -2019073 - B1_Mus1 SINE Alu -9 139 1 1 1787 610 71 0 0 chr3 157580750 157580835 -2018948 + BC1_Mm scRNA scRNA 1 85 -67 1 1787 351 0 0 0 chr3 157580835 157580874 -2018909 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 1 1787 890 207 95 26 chr3 157580874 157581063 -2018720 - B3 SINE B2 -14 202 1 1 1787 1854 184 101 82 chr3 157581796 157582370 -2017413 + Lx9 LINE L1 7052 7636 -8 1 1787 643 147 51 8 chr3 157582386 157582503 -2017280 - B1F SINE Alu -13 136 15 1 1787 372 287 8 65 chr3 157582574 157582697 -2017086 + RSINE1 SINE B4 28 143 -22 1 1787 195 42 0 0 chr3 157583229 157583253 -2016530 + (TA)n Simple_repeat Simple_repeat 1 24 0 1 1787 333 0 0 0 chr3 157583253 157583289 -2016494 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 1787 341 135 107 13 chr3 157583535 157583610 -2016173 + B3 SINE B2 134 215 -1 1 1787 829 212 58 19 chr3 157584165 157584372 -2015411 + B3 SINE B2 1 215 -1 1 1787 1183 28 0 21 chr3 157584763 157584899 -2014884 + B1_Mus2 SINE Alu 2 137 -10 1 1787 222 37 0 0 chr3 157584899 157584926 -2014857 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 1787 257 235 125 58 chr3 157585137 157585241 -2014542 + PB1D7 SINE Alu 9 119 -1 1 1787 233 298 160 32 chr3 157586209 157586365 -2013418 - MIRb SINE MIR -84 178 3 1 1787 1251 150 92 0 chr3 157586373 157586580 -2013203 - URR1A DNA MER1_type 0 226 1 1 1787 295 211 29 22 chr3 157586887 157587023 -2012760 + GA-rich Low_complexity Low_complexity 1 137 0 2 1787 615 184 13 38 chr3 157587038 157587196 -2012587 + ID_B1 SINE B4 71 224 0 2 1787 1035 43 0 14 chr3 157587057 157587197 -2012586 + B1_Mus1 SINE Alu 10 147 -1 2 1787 378 286 22 0 chr3 157587209 157587300 -2012483 - RSINE1 SINE B4 -46 119 27 2 1787 1520 160 159 6 chr3 157587306 157587652 -2012131 - MTC LTR MaLR -21 400 2 2 1787 1538 47 0 45 chr3 157588511 157588712 -2011071 - B2_Mm1t SINE B2 0 193 2 2 1787 372 22 0 0 chr3 157588990 157589035 -2010748 + (TG)n Simple_repeat Simple_repeat 2 46 0 2 1787 505 268 18 60 chr3 157589037 157589204 -2010579 - B3 SINE B2 -48 168 9 2 1787 367 234 188 46 chr3 157589413 157589610 -2010173 - B4A SINE B4 -62 230 6 2 1787 300 229 0 14 chr3 157590131 157590202 -2009581 - PB1D7 SINE Alu 0 120 51 2 1787 408 232 212 38 chr3 157590400 157590584 -2009199 - ID_B1 SINE B4 -8 216 1 2 1787 24 0 0 0 chr3 157590587 157590611 -2009172 + AT_rich Low_complexity Low_complexity 1 24 0 2 1787 297 222 78 69 chr3 157590741 157590763 -2009020 + B1F SINE Alu 33 149 0 2 1787 390 151 32 85 chr3 157590763 157590857 -2008926 + ID_B1 SINE B4 135 223 -1 2 1787 369 0 0 0 chr3 157591656 157591697 -2008086 + (TC)n Simple_repeat Simple_repeat 1 41 0 2 1787 379 200 8 160 chr3 157592737 157592868 -2006915 + MT2B LTR ERVL 146 256 -345 2 1787 743 160 0 37 chr3 157592765 157592901 -2006882 + B1_Mur3 SINE Alu 6 136 -13 2 1787 242 0 0 57 chr3 157592902 157592937 -2006846 + (CAAA)n Simple_repeat Simple_repeat 3 35 0 2 1787 1222 48 0 0 chr3 157593227 157593374 -2006409 + B1_Mus2 SINE Alu 1 147 0 2 1787 576 12 98 0 chr3 157593377 157593502 -2006281 + L1Md_F3 LINE L1 6481 6584 0 2 1787 523 212 0 34 chr3 157593917 157594034 -2005749 - PB1D9 SINE Alu -2 118 6 2 1787 1065 71 43 0 chr3 157594455 157594596 -2005187 + B1_Mm SINE Alu 1 147 0 2 1787 2097 143 59 15 chr3 157594887 157595291 -2004492 - RLTR9B LTR ERVK -13 424 3 2 1787 229 284 15 0 chr3 157595363 157595430 -2004353 + B1F1 SINE Alu 80 147 -2 2 1787 219 294 11 45 chr3 157595441 157595530 -2004253 + BC1_Mm scRNA scRNA 4 89 -63 2 1787 399 306 27 27 chr3 157595588 157595699 -2004084 - PB1D10 SINE Alu 0 117 7 2 1787 549 244 7 30 chr3 157595898 157596033 -2003750 - B3 SINE B2 -83 133 2 2 1787 276 139 0 0 chr3 157596271 157596314 -2003469 - MurSatRep1 Unknown Unknown -1875 262 220 2 1787 915 237 160 62 chr3 157596314 157596426 -2003357 + RLTR11A2 LTR ERVK 2 108 -419 2 1787 1155 75 0 7 chr3 157596426 157596574 -2003209 - B1_Mus2 SINE Alu 0 147 1 2 1787 915 237 160 62 chr3 157596574 157596848 -2002935 + RLTR11A2 LTR ERVK 109 426 -101 2 1787 455 204 20 39 chr3 157596829 157596931 -2002852 + B3A SINE B2 36 135 -63 2 1787 523 149 84 0 chr3 157596992 157597099 -2002684 + RLTR11A2 LTR ERVK 412 527 0 2 1787 416 109 0 258 chr3 157597099 157597158 -2002625 + B1_Mus2 SINE Alu 58 100 -47 2 1787 1175 55 7 0 chr3 157597158 157597304 -2002479 - B1_Mus2 SINE Alu 0 147 1 2 1787 416 109 0 258 chr3 157597304 157597366 -2002417 + B1_Mus2 SINE Alu 101 147 0 2 1787 190 56 27 27 chr3 157597368 157597405 -2002378 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 2 1787 448 291 39 0 chr3 157597477 157597604 -2002179 + B4 SINE B4 97 228 -64 2 1787 862 235 65 5 chr3 157597606 157597807 -2001976 + B3 SINE B2 4 216 0 2 1787 575 191 83 8 chr3 157597811 157597943 -2001840 + B1_Mur1 SINE Alu 7 148 -1 2 1787 275 180 21 53 chr3 157597948 157598042 -2001741 + A-rich Low_complexity Low_complexity 4 94 0 2 1787 1744 149 46 3 chr3 157598089 157598413 -2001370 + RMER4B LTR ERVK 247 584 -1 2 1787 521 231 71 77 chr3 157598460 157598643 -2001140 - B3A SINE B2 -16 182 1 2 1787 680 0 0 12 chr3 157599182 157599263 -2000520 + (TCTA)n Simple_repeat Simple_repeat 2 81 0 2 1787 190 325 23 35 chr3 157599329 157599415 -2000368 - MIRb SINE MIR -48 220 136 2 1787 454 225 11 11 chr3 157599420 157599510 -2000273 + RMER20B LTR ERVK 10 99 -528 2 1787 966 191 382 11 chr3 157599563 157599997 -1999786 + RMER20B LTR ERVK 10 603 -24 2 1787 2153 131 23 6 chr3 157600120 157600473 -1999310 + RLTR15 LTR ERVK 1 359 0 2 1787 3053 94 7 53 chr3 157600913 157601364 -1998419 + RLTR23 LTR ERV1 1 430 0 2 1787 261 0 0 0 chr3 157601467 157601496 -1998287 + (TG)n Simple_repeat Simple_repeat 2 30 0 2 1787 246 62 0 0 chr3 157602116 157602148 -1997635 + (T)n Simple_repeat Simple_repeat 1 32 0 2 1787 1190 68 0 0 chr3 157602148 157602294 -1997489 - B1_Mus2 SINE Alu 0 147 2 2 1787 767 292 137 21 chr3 157602544 157602586 -1997197 + RMER5 LTR ERV1 77 133 -401 2 1787 1703 186 93 14 chr3 157602586 157602951 -1996832 - ORR1B1 LTR MaLR 0 394 1 2 1787 767 292 137 21 chr3 157602951 157603244 -1996539 + RMER5 LTR ERV1 134 451 -83 2 1787 2167 130 33 239 chr3 157603316 157603610 -1996173 + RLTR24 LTR ERV1 2 184 -345 2 1787 249 33 0 0 chr3 157603610 157603640 -1996143 + (CAAA)n Simple_repeat Simple_repeat 3 32 0 2 1787 2167 130 33 239 chr3 157603640 157604010 -1995773 + RLTR24 LTR ERV1 185 529 0 2 1787 1069 16 0 45 chr3 157604134 157604268 -1995515 + B1_Mus2 SINE Alu 1 128 -19 2 1787 329 21 0 0 chr3 157604268 157604315 -1995468 + B1_Mus2 SINE Alu 101 147 0 2 1787 234 0 0 0 chr3 157604315 157604341 -1995442 + (A)n Simple_repeat Simple_repeat 1 26 0 2 1787 4425 12 0 0 chr3 157604466 157604948 -1994835 + LTRIS_Mm LTR ERV1 1 482 0 2 1787 316 238 0 0 chr3 157604990 157605053 -1994730 - RSINE1 SINE B4 -100 65 3 2 1787 1472 55 11 0 chr3 157605063 157605246 -1994537 - B2_Mm1t SINE B2 -8 185 1 2 1787 1305 97 38 0 chr3 157606219 157606404 -1993379 - B2_Mm1a SINE B2 -1 192 1 2 1787 602 161 26 35 chr3 157606817 157606933 -1992850 - PB1D9 SINE Alu -1 119 5 2 1787 6459 57 13 24 chr3 157607003 157607607 -1992176 + RLTR13B1 LTR ERVK 1 599 -294 2 1787 2044 36 0 16 chr3 157607607 157607860 -1991923 - L1Md_F3 LINE L1 -14 6570 6322 2 1787 6459 57 13 24 chr3 157607860 157608158 -1991625 + RLTR13B1 LTR ERVK 600 893 0 2 1787 203 162 0 0 chr3 157608261 157608298 -1991485 + A-rich Low_complexity Low_complexity 2 38 0 2 1787 571 213 168 42 chr3 157608385 157608576 -1991207 - B3 SINE B2 0 216 2 2 1787 300 274 0 0 chr3 157608793 157608855 -1990928 - B1F2 SINE Alu -79 70 9 2 1787 290 283 0 0 chr3 157608803 157608863 -1990920 - ID_B1 SINE B4 -83 141 82 2 1787 340 210 0 90 chr3 157609019 157609108 -1990675 - RSINE1 SINE B4 -29 136 56 2 1787 429 234 8 75 chr3 157609139 157609259 -1990524 - PB1D7 SINE Alu -8 112 1 2 1787 342 0 0 0 chr3 157609286 157609324 -1990459 + (CA)n Simple_repeat Simple_repeat 1 38 0 2 1787 23 0 0 0 chr3 157610253 157610276 -1989507 + GC_rich Low_complexity Low_complexity 1 23 0 2 1787 29 28 0 0 chr3 157610416 157610452 -1989331 + GC_rich Low_complexity Low_complexity 1 36 0 2 1787 3389 25 8 8 chr3 157611460 157611856 -1987927 + MTA_Mm LTR MaLR 1 396 0 2 1787 683 83 0 10 chr3 157612351 157612448 -1987335 - B1_Mus1 SINE Alu -51 97 2 2 1787 375 256 11 55 chr3 157613041 157613132 -1986651 - RSINE1 SINE B4 -29 136 50 2 1787 24 53 0 0 chr3 157613190 157613228 -1986555 + AT_rich Low_complexity Low_complexity 1 38 0 2 1787 356 321 45 110 chr3 157613228 157613300 -1986483 - B4 SINE B4 -147 145 81 2 1787 584 191 264 56 chr3 157613300 157613478 -1986305 - B3 SINE B2 -1 215 1 2 1787 356 321 45 110 chr3 157613478 157613559 -1986224 - B4 SINE B4 -212 80 2 2 1787 1352 67 33 0 chr3 157613595 157613775 -1986008 - B2_Mm1t SINE B2 -6 187 2 2 1787 612 219 14 7 chr3 157613897 157614035 -1985748 + B1_Mus1 SINE Alu 3 141 -7 2 1787 1391 117 157 21 chr3 157614504 157614784 -1984999 - ORR1A3 LTR MaLR -8 318 1 2 1787 500 260 86 13 chr3 157614984 157615136 -1984647 + B3A SINE B2 2 164 -34 2 1787 414 0 0 0 chr3 157615140 157615186 -1984597 + (CA)n Simple_repeat Simple_repeat 2 47 0 2 1787 228 67 0 0 chr3 157615246 157615276 -1984507 + (TTCA)n Simple_repeat Simple_repeat 3 32 0 2 1787 514 259 19 0 chr3 157615279 157615387 -1984396 - PB1D9 SINE Alu -9 111 2 2 1787 804 250 28 0 chr3 157615438 157615614 -1984169 - B3A SINE B2 -16 182 2 2 1787 301 264 14 27 chr3 157615725 157615799 -1983984 - PB1D10 SINE Alu -7 110 38 2 1787 852 194 0 0 chr3 157616236 157616375 -1983408 - B1_Mus1 SINE Alu -8 140 2 2 1787 1644 32 0 0 chr3 157616452 157616641 -1983142 + B2_Mm1t SINE B2 1 189 -4 2 1787 789 278 6 12 chr3 157616641 157616812 -1982971 + B3A SINE B2 22 191 -7 2 1787 485 312 165 14 chr3 157616835 157617248 -1982535 - Kanga11a DNA Tc2 -184 786 312 2 1787 270 284 63 0 chr3 157617521 157617616 -1982167 - L2a LINE L2 0 3426 3326 2 1787 1065 84 138 0 chr3 157618002 157618169 -1981614 - B2_Mm2 SINE B2 -4 191 2 2 1787 235 295 186 55 chr3 157618449 157618632 -1981151 + Charlie1a DNA MER1_type 416 622 -833 2 1787 1364 85 16 0 chr3 157618668 157618857 -1980926 + B2_Mm2 SINE B2 2 193 -2 2 1787 593 203 94 36 chr3 157618874 157619012 -1980771 + B1_Mur4 SINE Alu 5 150 0 2 1787 242 246 171 8 chr3 157619036 157619159 -1980624 + Charlie1a DNA MER1_type 640 782 -673 2 1787 333 0 0 0 chr3 157619307 157619344 -1980439 + (CA)n Simple_repeat Simple_repeat 2 38 0 2 1787 502 293 114 14 chr3 157619345 157619556 -1980227 + Charlie1a DNA MER1_type 861 1092 -363 2 1787 216 0 0 0 chr3 157619686 157619710 -1980073 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 2 1787 1121 64 0 21 chr3 157619713 157619857 -1979926 - B1_Mm SINE Alu -5 142 2 2 1787 414 275 17 6 chr3 157619956 157620128 -1979655 - L1MA5 LINE L1 -4 6296 6123 2 1787 364 252 45 52 chr3 157620292 157620447 -1979336 - L1MA5 LINE L1 -355 5942 5789 2 1787 1083 149 95 11 chr3 157620539 157620729 -1979054 - URR1A DNA MER1_type -19 207 2 2 1787 240 100 0 0 chr3 157620789 157620829 -1978954 + (T)n Simple_repeat Simple_repeat 1 40 0 3 1787 191 195 0 24 chr3 157620937 157620979 -1978804 - L2 LINE L2 -1275 2144 2104 3 1787 243 281 50 29 chr3 157621100 157621239 -1978544 - L1M4 LINE L1 -1449 4697 4556 3 1787 350 138 218 0 chr3 157621498 157621585 -1978198 + PB1D9 SINE Alu 2 107 -13 3 1787 460 257 28 0 chr3 157622357 157622466 -1977317 - PB1D10 SINE Alu 0 117 6 3 1787 634 217 0 48 chr3 157622587 157622713 -1977070 - RSINE1 SINE B4 -35 130 11 3 1787 1051 211 14 40 chr3 157623156 157623378 -1976405 - B3 SINE B2 0 216 1 3 1787 1117 75 0 33 chr3 157623562 157623714 -1976069 - B1_Mus2 SINE Alu 0 147 1 3 1787 560 262 114 27 chr3 157624042 157624191 -1975592 - RSINE1 SINE B4 0 165 4 3 1787 737 227 8 8 chr3 157624222 157624355 -1975428 + B3 SINE B2 1 133 -83 3 1787 366 113 169 0 chr3 157624380 157624474 -1975309 - B2_Mm2 SINE B2 -16 179 47 3 1787 1188 99 41 0 chr3 157624502 157624674 -1975109 - B2_Mm2 SINE B2 -14 181 3 3 1787 549 280 14 7 chr3 157624768 157624912 -1974871 - B1_Mus2 SINE Alu -2 145 1 3 1787 1168 97 68 0 chr3 157625616 157625792 -1973991 + B2_Mm2 SINE B2 2 189 -6 3 1787 1103 62 7 52 chr3 157625820 157625974 -1973809 + B1_Mus1 SINE Alu 2 148 0 3 1787 789 226 22 16 chr3 157626096 157626280 -1973503 - RMER15-int LTR ERVL -2993 2006 1822 3 1787 493 231 112 0 chr3 157626331 157626465 -1973318 - RMER15-int LTR ERVL -3301 1698 1550 3 1787 2652 168 38 21 chr3 157626465 157626945 -1972838 - RMER15 LTR ERVL -79 496 9 3 1787 932 50 0 151 chr3 157627740 157627906 -1971877 - B1_Mus2 SINE Alu 0 147 7 3 1787 26821 57 2 0 chr3 157627973 157632257 -1967526 - L1Md_F2 LINE L1 -1 6581 2289 3 1787 3344 81 0 0 chr3 157632274 157632732 -1967051 - L1Md_F2 LINE L1 -348 6234 5777 3 1787 21 0 0 0 chr3 157632906 157632927 -1966856 + AT_rich Low_complexity Low_complexity 1 21 0 3 1787 566 249 21 231 chr3 157633009 157633141 -1966642 + ID_B1 SINE B4 2 224 0 3 1787 813 111 27 40 chr3 157633141 157633291 -1966492 + B1_Mus1 SINE Alu 1 148 0 3 1787 321 259 12 0 chr3 157633299 157633380 -1966403 + ID_B1 SINE B4 143 224 0 3 1787 844 85 0 17 chr3 157633391 157633511 -1966272 + B1_Mus1 SINE Alu 31 148 0 3 1787 399 89 0 0 chr3 157633944 157634000 -1965783 + (CA)n Simple_repeat Simple_repeat 1 56 0 3 1787 430 315 76 58 chr3 157634258 157634430 -1965353 + B3A SINE B2 2 176 -22 3 1787 187 93 47 0 chr3 157634512 157634555 -1965228 + (CA)n Simple_repeat Simple_repeat 2 46 0 3 1787 843 64 0 0 chr3 157634621 157634731 -1965052 + (TTTC)n Simple_repeat Simple_repeat 2 111 0 3 1787 1082 74 0 0 chr3 157634731 157634866 -1964917 - B1_Mus2 SINE Alu -12 135 1 3 1787 267 320 9 107 chr3 157634916 157635028 -1964755 + RSINE1 SINE B4 3 103 -62 3 1787 234 0 0 0 chr3 157635058 157635084 -1964699 + (CA)n Simple_repeat Simple_repeat 2 27 0 3 1787 189 121 0 0 chr3 157635329 157635362 -1964421 + (TG)n Simple_repeat Simple_repeat 2 34 0 3 1787 660 224 99 0 chr3 157635366 157635527 -1964256 - B3A SINE B2 -21 177 1 3 1787 698 203 13 40 chr3 157636338 157636487 -1963296 + B3A SINE B2 50 194 -4 3 1787 45 0 0 18 chr3 157636857 157636890 -1962893 + AT_rich Low_complexity Low_complexity 1 33 0 3 1787 686 178 155 0 chr3 157636890 157637019 -1962764 - B1_Mur3 SINE Alu 0 149 1 3 1787 45 0 0 18 chr3 157637019 157637041 -1962742 + AT_rich Low_complexity Low_complexity 1 22 0 3 1787 834 232 81 15 chr3 157637505 157637702 -1962081 + B4A SINE B4 1 210 -82 3 1787 26 98 0 0 chr3 157638682 157638764 -1961019 + AT_rich Low_complexity Low_complexity 1 82 0 3 1787 936 269 30 15 chr3 157638923 157639259 -1960524 - L1MB3 LINE L1 -44 6139 5799 3 1787 24 77 0 0 chr3 157639358 157639410 -1960373 + AT_rich Low_complexity Low_complexity 1 52 0 3 1787 353 230 96 73 chr3 157640237 157640373 -1959410 + B1F SINE Alu 1 139 -10 3 1787 742 253 113 21 chr3 157640382 157640576 -1959207 + B3 SINE B2 1 212 -4 3 1787 362 234 206 0 chr3 157640882 157640989 -1958794 + 7SLRNA srpRNA srpRNA 19 147 -167 3 1787 196 125 52 35 chr3 157641051 157641109 -1958674 + (TATATG)n Simple_repeat Simple_repeat 2 60 0 3 1787 527 160 96 0 chr3 157641745 157641839 -1957944 - B1_Mur4 SINE Alu -6 144 42 3 1787 477 0 0 0 chr3 157641889 157641942 -1957841 + (TTTA)n Simple_repeat Simple_repeat 4 56 0 3 1787 1385 25 0 0 chr3 157641942 157642105 -1957678 - B2_Mm1a SINE B2 -30 163 1 3 1787 1071 70 28 0 chr3 157642201 157642343 -1957440 - B1_Mus2 SINE Alu 0 147 2 3 1787 1290 82 27 16 chr3 157642351 157642536 -1957247 - B2_Mm2 SINE B2 -8 187 1 3 1787 3506 157 65 15 chr3 157642569 157643235 -1956548 - Lx2B LINE L1 -8 6992 6294 3 1787 1235 27 0 13 chr3 157643268 157643417 -1956366 - B1_Mm SINE Alu 0 147 1 3 1787 3024 176 68 59 chr3 157643584 157644493 -1955290 - RLTR13D1 LTR ERVK 0 855 1 3 1787 613 197 91 0 chr3 157644509 157644641 -1955142 - B1_Mur3 SINE Alu 0 149 6 3 1787 691 218 130 24 chr3 157644644 157644813 -1954970 - B3 SINE B2 -2 214 28 3 1787 328 109 36 0 chr3 157644813 157644868 -1954915 + B1_Mus2 SINE Alu 91 147 0 3 1787 544 247 109 33 chr3 157645423 157645607 -1954176 + B3A SINE B2 1 198 0 3 1787 1266 274 25 51 chr3 157645624 157645978 -1953805 - MTE2a LTR MaLR -30 349 5 3 1787 183 129 0 0 chr3 157646014 157646045 -1953738 + (TTTG)n Simple_repeat Simple_repeat 4 34 0 3 1787 405 0 0 0 chr3 157646045 157646090 -1953693 + (TG)n Simple_repeat Simple_repeat 2 46 0 3 1787 559 203 86 50 chr3 157646114 157646254 -1953529 - B1_Mm SINE Alu -1 146 2 3 1787 14077 49 7 2 chr3 157646762 157648545 -1951238 + ORR1A0-int LTR MaLR 1 1792 0 3 1787 1921 22 0 0 chr3 157648545 157648774 -1951009 + ORR1A0 LTR MaLR 1 229 -117 3 1787 13786 85 5 4 chr3 157648789 157651554 -1948229 + L1_Mus1 LINE L1 3802 6567 0 3 1787 248 159 0 0 chr3 157652229 157652273 -1947510 - PB1 SINE Alu -47 80 37 3 1787 337 351 38 15 chr3 157653440 157653573 -1946210 - MER2 DNA MER2_type -3 342 207 3 1787 2337 107 16 3 chr3 157653796 157653885 -1945898 + L1_Mur2 LINE L1 2057 2144 -3733 3 1787 207 0 0 0 chr3 157653885 157653908 -1945875 + (CA)n Simple_repeat Simple_repeat 2 24 0 3 1787 2337 107 16 3 chr3 157653908 157654193 -1945590 + L1_Mur2 LINE L1 2145 2435 -3442 3 1787 465 66 0 0 chr3 157654275 157654336 -1945447 + (TG)n Simple_repeat Simple_repeat 2 62 0 3 1787 33 85 0 0 chr3 157655349 157655431 -1944352 + AT_rich Low_complexity Low_complexity 1 82 0 3 1787 767 296 90 28 chr3 157655613 157655968 -1943815 - MLT2C2 LTR ERVL -23 441 65 3 1787 920 241 16 16 chr3 157658109 157658310 -1941473 - B3A SINE B2 0 216 7 3 1787 657 173 0 0 chr3 157658987 157659114 -1940669 + (TCTA)n Simple_repeat Simple_repeat 4 130 0 3 1787 287 238 0 160 chr3 157659114 157659214 -1940569 - B4 SINE B4 -60 232 149 3 1787 602 99 45 15 chr3 157659127 157659229 -1940554 - B1_Mus2 SINE Alu -6 141 1 3 1787 188 61 61 0 chr3 157660036 157660069 -1939714 + (TCTG)n Simple_repeat Simple_repeat 4 38 0 3 1787 594 227 15 22 chr3 157660404 157660539 -1939244 + ID_B1 SINE B4 87 220 -4 3 1787 673 156 37 0 chr3 157660858 157660967 -1938816 + B1_Mur2 SINE Alu 37 149 0 3 1787 198 0 0 0 chr3 157661115 157661137 -1938646 + (TTAA)n Simple_repeat Simple_repeat 3 24 0 3 1787 480 18 0 0 chr3 157661165 157661222 -1938561 + (TCTA)n Simple_repeat Simple_repeat 4 60 0 3 1787 1062 111 0 0 chr3 157661223 157661367 -1938416 - B1_Mus1 SINE Alu -4 144 1 3 1787 189 0 0 0 chr3 157661471 157661492 -1938291 + (T)n Simple_repeat Simple_repeat 1 21 0 3 1787 343 267 93 56 chr3 157661525 157661632 -1938151 - ID_B1 SINE B4 -20 204 94 3 1787 229 299 108 49 chr3 157661542 157661644 -1938139 - B1_Mus1 SINE Alu -36 112 5 3 1787 203 140 0 20 chr3 157662705 157662756 -1937027 + T-rich Low_complexity Low_complexity 3 52 0 3 1787 348 276 76 17 chr3 157665934 157666052 -1933731 + B1F SINE Alu 15 139 -10 3 1787 275 307 23 0 chr3 157666080 157666168 -1933615 + BC1_Mm scRNA scRNA 9 98 -54 3 1787 595 159 0 36 chr3 157667680 157667791 -1931992 + B1_Mus1 SINE Alu 29 135 -13 3 1787 22 35 0 0 chr3 157669978 157670007 -1929776 + AT_rich Low_complexity Low_complexity 1 29 0 3 1787 1378 51 73 0 chr3 157670240 157670418 -1929365 - B2_Mm2 SINE B2 -4 191 1 3 1787 231 167 130 0 chr3 157671375 157671429 -1928354 + B1F1 SINE Alu 1 61 -88 3 1787 284 255 191 25 chr3 157672070 157672227 -1927556 + MLT2F LTR ERVL 288 470 -193 3 1787 621 176 288 45 chr3 157672599 157672965 -1926818 - RMER4A LTR ERVK -14 452 17 3 1787 268 262 27 27 chr3 157675297 157675407 -1924376 + CT-rich Low_complexity Low_complexity 3 112 0 3 1787 844 92 274 0 chr3 157676143 157676296 -1923487 - B2_Mm2 SINE B2 0 195 1 3 1787 745 83 19 0 chr3 157676312 157676420 -1923363 - PB1D9 SINE Alu 0 120 11 3 1787 471 121 256 41 chr3 157676420 157676431 -1923352 - ID_B1 SINE B4 0 222 78 3 1787 2368 64 13 0 chr3 157677165 157677477 -1922306 + L1_Mus1 LINE L1 6252 6567 0 3 1787 496 279 41 57 chr3 157678365 157678559 -1921224 - B3A SINE B2 -7 191 1 3 1787 911 203 52 5 chr3 157678883 157679076 -1920707 + B3 SINE B2 3 204 -12 3 1788 420 153 153 0 chr3 157680081 157680166 -1919617 + B1_Mur1 SINE Alu 47 144 -5 4 1788 201 39 0 0 chr3 157682991 157683017 -1916766 + (CAAAA)n Simple_repeat Simple_repeat 3 28 0 4 1788 434 206 167 61 chr3 157683033 157683147 -1916636 + B1_Mur2 SINE Alu 2 127 -22 4 1788 1397 59 43 5 chr3 157683401 157683589 -1916194 - B2_Mm2 SINE B2 0 195 1 4 1788 578 231 40 24 chr3 157683762 157683886 -1915897 - B1_Mur3 SINE Alu -21 128 3 4 1788 270 284 206 0 chr3 157684113 157684215 -1915568 + B1F SINE Alu 1 123 -26 4 1788 21 57 0 0 chr3 157684215 157684250 -1915533 + AT_rich Low_complexity Low_complexity 1 35 0 4 1788 198 0 0 0 chr3 157684391 157684413 -1915370 + (A)n Simple_repeat Simple_repeat 1 22 0 4 1788 235 276 92 121 chr3 157685718 157685957 -1913826 + Charlie24 DNA MER1_type 1513 1744 -706 4 1788 393 198 26 0 chr3 157686578 157686694 -1913089 + GA-rich Low_complexity Low_complexity 1 119 0 4 1788 282 273 36 18 chr3 157690252 157690364 -1909419 + PB1D10 SINE Alu 4 117 0 4 1788 1186 119 27 11 chr3 157690462 157690649 -1909134 - B2_Mm2 SINE B2 -4 191 2 4 1788 270 208 123 49 chr3 157691106 157691187 -1908596 - PB1D10 SINE Alu -5 112 26 4 1788 774 222 117 0 chr3 157691512 157691692 -1908091 + B3 SINE B2 6 206 -10 4 1788 369 0 0 0 chr3 157692141 157692182 -1907601 + (CA)n Simple_repeat Simple_repeat 2 42 0 4 1788 195 42 0 0 chr3 157692207 157692231 -1907552 + (A)n Simple_repeat Simple_repeat 1 24 0 4 1788 180 0 0 0 chr3 157692711 157692731 -1907052 + (C)n Simple_repeat Simple_repeat 1 20 0 4 1788 189 107 0 0 chr3 157693116 157693144 -1906639 + (T)n Simple_repeat Simple_repeat 1 28 0 4 1788 1139 68 14 0 chr3 157693144 157693290 -1906493 - B1_Mus1 SINE Alu 0 148 1 4 1788 211 167 48 0 chr3 157695844 157695886 -1903897 - RSINE1 SINE B4 -68 97 54 4 1788 1130 38 0 0 chr3 157695949 157696081 -1903702 - B1_Mus1 SINE Alu -15 133 2 4 1788 299 271 14 0 chr3 157697022 157697092 -1902691 - ID4 SINE ID -5 78 8 4 1788 286 282 161 18 chr3 157697165 157697277 -1902506 - B3 SINE B2 -11 205 78 4 1788 512 270 7 33 chr3 157697237 157697270 -1902513 - ID_B1 SINE B4 -6 218 115 4 1788 762 84 0 9 chr3 157697270 157697378 -1902405 - B1_Mus1 SINE Alu -41 107 1 4 1788 512 270 7 33 chr3 157697378 157697390 -1902393 - ID_B1 SINE B4 -6 114 70 4 1788 538 205 117 36 chr3 157697753 157697890 -1901893 + B1_Mur1 SINE Alu 2 149 0 4 1788 619 259 86 91 chr3 157698064 157698251 -1901532 + B3A SINE B2 1 186 -9 4 1788 268 219 47 0 chr3 157698538 157698602 -1901181 + RSINE1 SINE B4 81 147 -18 4 1788 211 103 50 25 chr3 157698881 157698921 -1900862 + CT-rich Low_complexity Low_complexity 4 44 0 4 1788 720 149 42 7 chr3 157698921 157699063 -1900720 - B1_Mur3 SINE Alu 0 149 3 4 1788 1024 272 90 57 chr3 157700438 157700805 -1898978 + MTE2a LTR MaLR 1 379 0 4 1788 1151 251 84 71 chr3 157700806 157701200 -1898583 + MTE2a-int LTR MaLR 3 401 -1179 4 1788 306 0 0 0 chr3 157701277 157701311 -1898472 + (T)n Simple_repeat Simple_repeat 1 34 0 4 1788 255 254 32 0 chr3 157701326 157701389 -1898394 + MTE2a LTR MaLR 56 120 -259 4 1788 522 131 317 8 chr3 157701855 157701978 -1897805 - MTC LTR MaLR 0 421 261 4 1788 263 272 82 61 chr3 157702570 157702668 -1897115 + MIRc SINE MIR 92 191 -77 4 1788 257 302 84 9 chr3 157702838 157702943 -1896840 - RSINE1 SINE B4 -31 134 22 4 1788 566 224 93 51 chr3 157702943 157703197 -1896586 + ORR1D1 LTR MaLR 1 374 0 4 1788 207 0 0 0 chr3 157703974 157703997 -1895786 + (T)n Simple_repeat Simple_repeat 1 23 0 4 1788 187 282 27 40 chr3 157704161 157704235 -1895548 + MIR3 SINE MIR 133 205 -3 4 1788 706 186 0 67 chr3 157705445 157705595 -1894188 - B1_Mm SINE Alu -6 141 2 4 1788 266 238 143 0 chr3 157705661 157705724 -1894059 - tRNA-Thr-ACY tRNA tRNA -5 72 1 4 1788 659 246 75 45 chr3 157705936 157706136 -1893647 + B3 SINE B2 1 206 -10 4 1788 236 189 0 0 chr3 157706956 157706993 -1892790 + B3 SINE B2 100 136 -80 4 1788 611 231 8 0 chr3 157706981 157707114 -1892669 - B3 SINE B2 -54 141 2 4 1788 24 32 0 0 chr3 157707945 157707976 -1891807 + AT_rich Low_complexity Low_complexity 1 31 0 4 1788 505 282 16 101 chr3 157707979 157708168 -1891615 - B3A SINE B2 -2 196 24 4 1788 482 114 0 12 chr3 157708295 157708375 -1891408 + (TTCC)n Simple_repeat Simple_repeat 2 80 0 4 1788 374 230 190 0 chr3 157708416 157708516 -1891267 - B1_Mus1 SINE Alu -25 123 5 4 1788 1141 92 25 27 chr3 157708558 157708762 -1891021 + B2_Mm1t SINE B2 1 195 0 4 1788 23 25 0 24 chr3 157708969 157708981 -1890802 + AT_rich Low_complexity Low_complexity 1 12 0 4 1788 814 192 154 0 chr3 157708981 157709163 -1890620 - B3 SINE B2 -6 210 1 4 1788 23 25 0 24 chr3 157709163 157709191 -1890592 + AT_rich Low_complexity Low_complexity 1 28 0 4 1788 264 267 0 13 chr3 157709308 157709384 -1890399 - L1MC4a LINE L1 -11 7871 7797 4 1788 342 152 0 0 chr3 157709523 157709582 -1890201 + CT-rich Low_complexity Low_complexity 3 61 0 4 1788 2210 238 122 88 chr3 157709635 157709885 -1889898 - Lx8 LINE L1 -341 7132 6916 4 1788 943 116 7 52 chr3 157709885 157710040 -1889743 - B1_Mur3 SINE Alu 0 149 2 4 1788 2210 238 122 88 chr3 157710040 157710684 -1889099 - Lx8 LINE L1 -558 6915 6208 4 1788 868 228 0 23 chr3 157710720 157710895 -1888888 - B3A SINE B2 -27 171 1 4 1788 21 0 0 0 chr3 157710895 157710916 -1888867 + AT_rich Low_complexity Low_complexity 1 21 0 4 1788 222 91 0 0 chr3 157710998 157711031 -1888752 + (CA)n Simple_repeat Simple_repeat 1 33 0 4 1788 182 256 44 89 chr3 157711181 157711271 -1888512 - L2 LINE L2 -531 2888 2803 4 1788 24 85 0 0 chr3 157712128 157712187 -1887596 + AT_rich Low_complexity Low_complexity 1 59 0 4 1788 424 303 65 16 chr3 157712202 157712326 -1887457 - ID_B1 SINE B4 -8 216 87 4 1788 617 198 176 58 chr3 157713006 157713194 -1886589 - B3 SINE B2 -6 210 1 4 1788 287 181 65 108 chr3 157713690 157713783 -1886000 + PB1 SINE Alu 39 127 0 4 1788 568 272 17 58 chr3 157713892 157714096 -1885687 + B4A SINE B4 1 291 -1 4 1788 23 33 0 0 chr3 157714609 157714639 -1885144 + AT_rich Low_complexity Low_complexity 1 30 0 4 1788 21 36 0 0 chr3 157715971 157715999 -1883784 + AT_rich Low_complexity Low_complexity 1 28 0 4 1788 980 189 115 0 chr3 157717954 157718145 -1881638 + B3 SINE B2 4 216 0 4 1788 294 146 18 0 chr3 157718269 157718324 -1881459 - B3 SINE B2 -4 212 157 4 1788 1147 82 0 0 chr3 157718372 157718518 -1881265 - B1_Mus1 SINE Alu -2 146 1 4 1788 1270 204 180 43 chr3 157718802 157719129 -1880654 - ORR1D1 LTR MaLR -2 372 1 4 1788 232 274 171 49 chr3 157719342 157719465 -1880318 - RLTR20A LTR ERVK -344 197 60 4 1788 1012 223 48 0 chr3 157720070 157720258 -1879525 - B3 SINE B2 -6 210 14 4 1788 22 0 0 0 chr3 157723622 157723644 -1876139 + AT_rich Low_complexity Low_complexity 1 22 0 4 1788 964 221 46 0 chr3 157723664 157723859 -1875924 - B3 SINE B2 -7 209 6 4 1788 2438 64 3 3 chr3 157726205 157726520 -1873263 + L1_Mus2 LINE L1 6252 6566 0 4 1788 1112 89 0 0 chr3 157727751 157727897 -1871886 + B1_Mus2 SINE Alu 2 147 0 4 1788 207 0 0 0 chr3 157727897 157727920 -1871863 + (A)n Simple_repeat Simple_repeat 1 23 0 4 1788 2346 131 74 24 chr3 157728145 157728566 -1871217 + Lx2B LINE L1 6559 7000 0 4 1788 197 407 62 0 chr3 157728722 157728835 -1870948 + MIR SINE MIR 51 170 -92 4 1788 21 0 0 0 chr3 157730625 157730646 -1869137 + AT_rich Low_complexity Low_complexity 1 21 0 4 1788 425 258 10 10 chr3 157732911 157733009 -1866774 - PB1D10 SINE Alu -16 101 4 4 1788 234 0 0 0 chr3 157734825 157734851 -1864932 + (TA)n Simple_repeat Simple_repeat 1 26 0 4 1788 420 355 27 45 chr3 157735115 157735407 -1864376 - B4A SINE B4 -4 288 2 4 1788 718 122 0 9 chr3 157735845 157735953 -1863830 - B1_Mus1 SINE Alu -7 141 35 4 1788 207 100 0 0 chr3 157736161 157736191 -1863592 + (CAAG)n Simple_repeat Simple_repeat 2 31 0 4 1788 207 0 0 0 chr3 157737193 157737216 -1862567 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 4 1788 438 79 0 0 chr3 157737768 157737831 -1861952 + (TAGA)n Simple_repeat Simple_repeat 4 66 0 4 1788 442 58 43 0 chr3 157737832 157737901 -1861882 + (GAAA)n Simple_repeat Simple_repeat 1 72 0 4 1788 504 0 0 0 chr3 157739549 157739605 -1860178 + (GA)n Simple_repeat Simple_repeat 1 56 0 4 1788 243 164 0 0 chr3 157740788 157740849 -1858934 + CT-rich Low_complexity Low_complexity 2 62 0 4 1788 718 218 15 0 chr3 157741306 157741439 -1858344 - B1_Mur2 SINE Alu -12 137 3 4 1788 245 75 25 0 chr3 157742832 157742872 -1856911 + (TTTC)n Simple_repeat Simple_repeat 3 43 0 4 1788 1270 20 0 7 chr3 157742874 157743023 -1856760 - B1_Mus1 SINE Alu 0 148 1 4 1788 298 244 25 13 chr3 157747733 157747812 -1851971 - ID4 SINE ID -3 80 1 4 1788 940 229 10 63 chr3 157747904 157748109 -1851674 - B3A SINE B2 -3 195 2 4 1788 187 244 0 35 chr3 157748792 157748877 -1850906 + (TATG)n Simple_repeat Simple_repeat 1 82 0 4 1788 1091 281 21 3 chr3 157748903 157749189 -1850594 - B4A SINE B4 0 292 2 4 1788 198 0 0 0 chr3 157749684 157749706 -1850077 + (CAA)n Simple_repeat Simple_repeat 2 23 0 4 1788 265 260 42 0 chr3 157750206 157750302 -1849481 + (TAGA)n Simple_repeat Simple_repeat 2 101 0 4 1788 276 224 17 0 chr3 157750450 157750508 -1849275 - PB1D10 SINE Alu -2 115 57 5 1788 22 0 0 0 chr3 157750598 157750620 -1849163 + AT_rich Low_complexity Low_complexity 1 22 0 5 1788 525 58 0 0 chr3 157750666 157750735 -1849048 + (TA)n Simple_repeat Simple_repeat 2 70 0 5 1788 713 258 6 58 chr3 157750737 157750910 -1848873 - RSINE1 SINE B4 -1 164 1 5 1788 328 250 55 33 chr3 157752435 157752526 -1847257 - PB1D10 SINE Alu -8 109 17 5 1788 257 244 246 25 chr3 157752526 157752547 -1847236 - ID_B1 SINE B4 -2 196 79 5 1788 263 282 13 0 chr3 157753208 157753286 -1846497 - ID4 SINE ID -4 79 1 5 1788 353 279 54 62 chr3 157755210 157755340 -1844443 + ORR1E LTR MaLR 64 192 -167 5 1788 1124 178 64 5 chr3 157755726 157755929 -1843854 + B3 SINE B2 2 216 0 5 1788 466 194 16 20 chr3 157755995 157756108 -1843675 + B1F2 SINE Alu 10 149 0 5 1788 222 255 0 0 chr3 157756117 157756168 -1843615 + GA-rich Low_complexity Low_complexity 2 52 0 5 1788 300 91 0 0 chr3 157756169 157756213 -1843570 + (GGAA)n Simple_repeat Simple_repeat 4 47 0 5 1788 185 0 0 39 chr3 157756448 157756474 -1843309 + (GGGTG)n Simple_repeat Simple_repeat 3 27 0 5 1788 727 331 34 51 chr3 157757054 157757350 -1842433 + B4A SINE B4 2 292 0 5 1788 187 206 30 40 chr3 157757387 157757488 -1842295 + (CATA)n Simple_repeat Simple_repeat 3 102 0 5 1788 36201 31 1 0 chr3 157758240 157765153 -1834630 - L1Md_T LINE L1 0 6585 1 5 1788 353 123 15 0 chr3 157765313 157765378 -1834405 + (GGGA)n Simple_repeat Simple_repeat 4 69 0 5 1788 252 0 0 0 chr3 157765417 157765445 -1834338 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 5 1788 1118 109 0 0 chr3 157765459 157765606 -1834177 + B1_Mus2 SINE Alu 1 147 0 5 1788 347 39 0 56 chr3 157765606 157765660 -1834123 + (A)n Simple_repeat Simple_repeat 1 51 0 5 1788 245 204 37 0 chr3 157767771 157767825 -1831958 + B1F1 SINE Alu 13 68 -81 5 1788 630 93 21 0 chr3 157767848 157767945 -1831838 - B1_Mus2 SINE Alu 0 147 49 5 1788 453 195 12 0 chr3 157767949 157768031 -1831752 + B1F SINE Alu 57 139 -10 5 1788 824 308 164 31 chr3 157769446 157769892 -1829891 - MLT1D LTR MaLR 0 505 1 5 1788 437 84 0 14 chr3 157770824 157770896 -1828887 + (TG)n Simple_repeat Simple_repeat 1 71 0 5 1788 579 285 82 14 chr3 157770898 157771044 -1828739 - B3A SINE B2 -42 156 1 5 1788 23 0 0 0 chr3 157771416 157771439 -1828344 + AT_rich Low_complexity Low_complexity 1 23 0 5 1788 349 173 0 0 chr3 157772104 157772156 -1827627 + RSINE1 SINE B4 71 122 -43 5 1788 441 0 0 0 chr3 157772161 157772210 -1827573 + (CA)n Simple_repeat Simple_repeat 1 49 0 5 1788 1353 252 38 19 chr3 157772239 157772611 -1827172 + MTEa LTR MaLR 1 379 0 5 1788 1525 53 16 0 chr3 157773040 157773230 -1826553 - B2_Mm1t SINE B2 0 193 1 5 1788 22 0 0 0 chr3 157773752 157773774 -1826009 + AT_rich Low_complexity Low_complexity 1 22 0 5 1788 234 266 97 77 chr3 157773964 157774119 -1825664 + YREP_Mm Unknown Unknown 151 308 -1504 5 1788 795 278 20 10 chr3 157773988 157774184 -1825599 - ID_B1 SINE B4 -7 217 20 5 1788 1010 45 97 0 chr3 157774484 157774618 -1825165 - B1_Mus2 SINE Alu 0 147 1 5 1788 1088 255 109 47 chr3 157774670 157775008 -1824775 + ORR1E LTR MaLR 1 359 0 5 1788 35657 5 0 0 chr3 157775526 157780898 -1818885 + L1Md_A LINE L1 214 5586 -297 5 1788 9045 3 0 0 chr3 157780898 157781894 -1817889 + L1Md_A LINE L1 5587 6582 0 5 1788 1224 55 0 0 chr3 157781905 157782051 -1817732 + B1_Mus2 SINE Alu 2 147 0 5 1788 5516 104 44 1 chr3 157782153 157782905 -1816878 + RMER12 LTR ERVK 1 780 -542 5 1788 194 91 0 29 chr3 157782905 157782939 -1816844 + (TA)n Simple_repeat Simple_repeat 2 34 0 5 1788 5516 104 44 1 chr3 157782939 157783026 -1816757 + RMER12 LTR ERVK 781 875 -447 5 1788 552 30 0 0 chr3 157783030 157783096 -1816687 + (GA)n Simple_repeat Simple_repeat 1 66 0 5 1788 354 23 0 0 chr3 157783260 157783303 -1816480 + (TCTG)n Simple_repeat Simple_repeat 2 44 0 5 1788 468 0 0 0 chr3 157783305 157783357 -1816426 + (CA)n Simple_repeat Simple_repeat 1 52 0 5 1788 483 353 54 5 chr3 157784339 157784544 -1815239 + MIRb SINE MIR 26 240 -28 5 1788 231 191 0 0 chr3 157785618 157785681 -1814102 + CT-rich Low_complexity Low_complexity 2 64 0 5 1788 929 269 49 32 chr3 157785725 157786009 -1813774 - B4 SINE B4 -2 290 2 5 1788 814 279 84 7 chr3 157786764 157787193 -1812590 + L1M2 LINE L1 4831 5292 -851 5 1788 378 121 0 0 chr3 157787257 157787323 -1812460 + (CCAA)n Simple_repeat Simple_repeat 2 67 0 5 1788 411 21 0 0 chr3 157787479 157787527 -1812256 + (TATG)n Simple_repeat Simple_repeat 2 49 0 5 1788 8255 34 13 5 chr3 157787920 157788908 -1810875 + L1Md_F2 LINE L1 5587 6582 0 5 1788 433 332 123 28 chr3 157789003 157789254 -1810529 - B4 SINE B4 -4 288 14 5 1788 228 257 0 108 chr3 157789182 157789265 -1810518 - ID4 SINE ID -1 82 9 5 1788 256 330 35 18 chr3 157789686 157789800 -1809983 - MamRep1161 DNA TcMar -830 127 12 5 1788 444 19 0 0 chr3 157789853 157789906 -1809877 + (CA)n Simple_repeat Simple_repeat 2 54 0 5 1788 1344 138 4 51 chr3 157792053 157792289 -1807494 + URR1B DNA MER1_type 1 225 0 5 1788 287 268 0 6 chr3 157792421 157792590 -1807193 + (CA)n Simple_repeat Simple_repeat 2 169 0 5 1788 322 297 72 0 chr3 157793479 157793617 -1806166 + L1MB7 LINE L1 6028 6175 -9 5 1788 314 313 219 48 chr3 157793789 157794346 -1805437 - L2 LINE L2 -556 2863 2212 5 1788 383 255 20 41 chr3 157794843 157794990 -1804793 + L1MA4 LINE L1 5757 5900 -400 5 1788 831 292 39 28 chr3 157796283 157796344 -1803439 - B4 SINE B4 -6 286 230 5 1788 504 0 0 0 chr3 157796344 157796400 -1803383 + (TC)n Simple_repeat Simple_repeat 1 56 0 5 1788 839 159 0 42 chr3 157796402 157796546 -1803237 - B1_Mur4 SINE Alu -12 138 1 5 1788 831 292 39 28 chr3 157796546 157796763 -1803020 - B4 SINE B4 -63 229 2 5 1788 226 347 29 17 chr3 157796788 157796905 -1802878 - MIRc SINE MIR -101 167 54 5 1788 21 0 0 0 chr3 157798684 157798705 -1801078 + AT_rich Low_complexity Low_complexity 1 21 0 5 1788 431 63 16 0 chr3 157799809 157799872 -1799911 + (TG)n Simple_repeat Simple_repeat 1 64 0 5 1788 728 252 156 43 chr3 157799897 157800154 -1799629 - B4A SINE B4 -6 286 1 5 1788 239 298 74 11 chr3 157800262 157800357 -1799426 - MIR SINE MIR -44 218 118 5 1788 306 379 68 5 chr3 157801779 157801986 -1797797 + L1MDa LINE L1 707 926 -5707 5 1788 899 197 214 0 chr3 157802016 157802194 -1797589 - B3 SINE B2 0 216 1 5 1788 440 246 260 74 chr3 157802295 157802537 -1797246 + B4 SINE B4 2 288 -4 5 1788 568 121 22 39 chr3 157802642 157802822 -1796961 + (CA)n Simple_repeat Simple_repeat 1 177 0 5 1788 1763 278 95 40 chr3 157802853 157803393 -1796390 + L1MDa LINE L1 1021 1600 -5033 5 1788 462 258 213 6 chr3 157803393 157803557 -1796226 + B3A SINE B2 1 198 0 5 1788 1763 278 95 40 chr3 157803557 157804124 -1795659 + L1MDa LINE L1 1601 2189 -4444 5 1788 372 43 0 0 chr3 157804289 157804335 -1795448 + (TG)n Simple_repeat Simple_repeat 2 47 0 5 1788 447 256 109 11 chr3 157804346 157804520 -1795263 + L1MDa LINE L1 2345 2535 -4098 5 1788 731 312 45 28 chr3 157804586 157804873 -1794910 - B4A SINE B4 0 292 1 5 1788 415 329 103 12 chr3 157804879 157805131 -1794652 + L1MDa LINE L1 2631 2905 -3632 5 1788 497 294 137 25 chr3 157805143 157805582 -1794201 + L1MDa LINE L1 2939 3426 -3111 5 1788 485 306 69 11 chr3 157805652 157806043 -1793740 + Lx3A LINE L1 5040 5491 -809 5 1788 507 143 0 38 chr3 157806044 157806124 -1793659 + B2_Mm2 SINE B2 2 78 -117 5 1788 306 265 72 50 chr3 157806224 157806363 -1793420 + B2_Mm2 SINE B2 54 195 0 5 1788 790 258 43 27 chr3 157806366 157806706 -1793077 + Lx3A LINE L1 5496 5822 -475 5 1788 225 308 89 45 chr3 157806978 157807090 -1792693 + MIRb SINE MIR 148 264 -4 5 1788 1327 131 9 9 chr3 157807467 157807690 -1792093 + L1_Mus3 LINE L1 6416 6638 0 5 1788 537 221 169 45 chr3 157808852 157809048 -1790735 - B3A SINE B2 -7 188 4 5 1788 256 370 28 34 chr3 157809288 157809467 -1790316 + L2a LINE L2 2706 2883 -536 5 1788 2081 39 0 12 chr3 157809694 157809953 -1789830 + L1Md_F3 LINE L1 6327 6582 -2 5 1788 387 60 0 0 chr3 157810338 157810388 -1789395 + (T)n Simple_repeat Simple_repeat 1 50 0 5 1789 181 327 18 0 chr3 157810838 157810893 -1788890 + L2a LINE L2 3342 3397 -29 5 1789 375 287 99 0 chr3 157811050 157811151 -1788632 - RSINE1 SINE B4 -54 111 1 5 1789 24 53 0 0 chr3 157812248 157812286 -1787497 + AT_rich Low_complexity Low_complexity 1 38 0 5 1789 184 309 20 78 chr3 157813898 157814000 -1785783 - L2a LINE L2 -349 3077 2982 5 1789 207 338 0 0 chr3 157814173 157814253 -1785530 + (TA)n Simple_repeat Simple_repeat 1 80 0 5 1789 249 250 11 149 chr3 157814492 157814586 -1785197 + MT2B2 LTR ERVL 161 241 -343 5 1789 496 245 0 41 chr3 157814505 157814603 -1785180 + PB1D10 SINE Alu 7 100 -17 5 1789 432 0 0 0 chr3 157814603 157814651 -1785132 + (CAAAA)n Simple_repeat Simple_repeat 3 50 0 5 1789 537 83 0 0 chr3 157815307 157815391 -1784392 + (TCTA)n Simple_repeat Simple_repeat 3 86 0 5 1789 228 167 24 0 chr3 157816443 157816485 -1783298 + (TGAA)n Simple_repeat Simple_repeat 3 45 0 5 1789 209 256 0 0 chr3 157817875 157817914 -1781869 + polypyrimidine Low_complexity Low_complexity 1 39 0 5 1789 237 65 0 0 chr3 157818757 157818788 -1780995 + (TC)n Simple_repeat Simple_repeat 2 32 0 5 1789 3538 188 62 24 chr3 157825420 157826201 -1773582 + Lx3C LINE L1 6163 6972 -4 5 1789 210 128 0 0 chr3 157826541 157826580 -1773203 + (TA)n Simple_repeat Simple_repeat 2 40 0 5 1789 183 370 62 16 chr3 157827535 157827664 -1772119 - L2a LINE L2 -3 3423 3289 5 1789 716 223 128 0 chr3 157828091 157828279 -1771504 - B3 SINE B2 0 216 5 5 1789 203 56 56 0 chr3 157828444 157828480 -1771303 + (TTTG)n Simple_repeat Simple_repeat 3 40 0 5 1789 222 264 0 0 chr3 157830086 157830139 -1769644 - L2c LINE L2 -5 3382 3330 5 1789 277 283 88 9 chr3 157830140 157830254 -1769529 - Tigger5 DNA MER2_type -1 2405 2283 5 1789 417 294 153 10 chr3 157830251 157830447 -1769336 - Tigger5 DNA MER2_type -2163 243 20 5 1789 646 200 0 0 chr3 157830859 157830969 -1768814 - ID_B1 SINE B4 0 224 115 6 1789 351 295 25 59 chr3 157831133 157831252 -1768531 + PB1D9 SINE Alu 6 120 0 6 1789 217 260 40 0 chr3 157832122 157832172 -1767611 + (CGTG)n Simple_repeat Simple_repeat 3 54 0 6 1789 418 213 0 50 chr3 157832413 157832512 -1767271 - PB1D7 SINE Alu 0 120 27 6 1789 405 0 0 0 chr3 157833080 157833125 -1766658 + (TCTG)n Simple_repeat Simple_repeat 2 46 0 6 1789 26 0 0 0 chr3 157834054 157834080 -1765703 + AT_rich Low_complexity Low_complexity 1 26 0 6 1789 215 267 33 16 chr3 157835546 157835607 -1764176 + MIRc SINE MIR 24 85 -183 6 1789 457 208 52 10 chr3 157835739 157835836 -1763947 - PB1D7 SINE Alu -19 101 1 6 1789 306 0 0 0 chr3 157835839 157835873 -1763910 + (TTA)n Simple_repeat Simple_repeat 2 35 0 6 1789 1165 55 0 0 chr3 157835873 157836018 -1763765 - B1_Mm SINE Alu -2 145 1 6 1789 23 0 0 0 chr3 157836019 157836042 -1763741 + AT_rich Low_complexity Low_complexity 1 23 0 6 1789 23 54 0 0 chr3 157836557 157836594 -1763189 + AT_rich Low_complexity Low_complexity 1 37 0 6 1789 28 29 0 0 chr3 157836972 157837007 -1762776 + AT_rich Low_complexity Low_complexity 1 35 0 6 1789 24 0 0 0 chr3 157840347 157840371 -1759412 + AT_rich Low_complexity Low_complexity 1 24 0 6 1789 24 0 0 0 chr3 157841186 157841210 -1758573 + AT_rich Low_complexity Low_complexity 1 24 0 6 1789 992 256 39 49 chr3 157842260 157842544 -1757239 - B4A SINE B4 -3 289 9 6 1789 504 0 0 0 chr3 157844444 157844500 -1755283 + (TTA)n Simple_repeat Simple_repeat 2 57 0 6 1789 180 245 0 0 chr3 157844738 157844791 -1754992 + (TG)n Simple_repeat Simple_repeat 1 53 0 6 1789 692 221 74 0 chr3 157844809 157844958 -1754825 - RSINE1 SINE B4 -3 162 3 6 1789 631 229 8 0 chr3 157845061 157845179 -1754604 + B3A SINE B2 1 119 -79 6 1789 922 80 18 12 chr3 157845198 157845363 -1754420 + (CA)n Simple_repeat Simple_repeat 1 166 0 6 1789 3284 189 75 9 chr3 157847246 157848048 -1751735 + Lx4B LINE L1 6086 6930 -46 6 1789 559 261 77 0 chr3 157848165 157848295 -1751488 - B1_Mur2 SINE Alu -9 140 1 6 1789 582 157 0 0 chr3 157848631 157848733 -1751050 + CT-rich Low_complexity Low_complexity 1 102 0 6 1789 572 295 7 0 chr3 157848733 157848872 -1750911 - B1F2 SINE Alu -1 148 9 6 1789 186 43 0 0 chr3 157849005 157849028 -1750755 + (TTTTTG)n Simple_repeat Simple_repeat 6 28 0 6 1789 1161 42 21 0 chr3 157849028 157849171 -1750612 - B1_Mus2 SINE Alu 0 147 2 6 1789 285 257 45 54 chr3 157850492 157850603 -1749180 - MIRb SINE MIR -119 149 40 6 1789 264 343 166 18 chr3 157850650 157850819 -1748964 + MER102c DNA MER1_type 56 249 -82 6 1789 277 319 60 0 chr3 157851004 157851120 -1748663 + Tigger6a DNA MER2_type 445 567 -516 6 1789 775 29 0 19 chr3 157851233 157851337 -1748446 + (TTC)n Simple_repeat Simple_repeat 2 103 0 6 1789 499 96 24 0 chr3 157851338 157851421 -1748362 + (TC)n Simple_repeat Simple_repeat 2 86 0 6 1789 747 185 15 0 chr3 157851421 157851551 -1748232 - B1_Mur3 SINE Alu -15 134 3 6 1789 438 286 176 13 chr3 157851551 157851863 -1747920 + Tigger6a DNA MER2_type 692 1054 -29 6 1789 1358 315 42 24 chr3 157851879 157852335 -1747448 + MER21B LTR ERV1 5 468 -395 6 1789 182 65 0 61 chr3 157852376 157852409 -1747374 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 6 1789 344 326 51 0 chr3 157853097 157853235 -1746548 - MER5A1 DNA MER1_type -1 165 21 6 1789 629 25 13 0 chr3 157854002 157854081 -1745702 + (GA)n Simple_repeat Simple_repeat 1 80 0 6 1789 25 0 0 0 chr3 157855007 157855032 -1744751 + AT_rich Low_complexity Low_complexity 1 25 0 6 1789 361 275 25 0 chr3 157855965 157856045 -1743738 + B4A SINE B4 3 84 -208 6 1789 261 83 0 0 chr3 157856109 157856145 -1743638 + (CATATA)n Simple_repeat Simple_repeat 1 36 0 6 1789 272 275 0 28 chr3 157856551 157856622 -1743161 - B4 SINE B4 -222 70 2 6 1789 651 103 0 0 chr3 157856663 157856760 -1743023 + (CAGAC)n Simple_repeat Simple_repeat 1 97 0 6 1789 366 302 59 41 chr3 157858035 157858204 -1741579 - Lx8 LINE L1 -131 7342 7171 6 1789 215 286 35 23 chr3 157859111 157859197 -1740586 - L3 LINE CR1 -807 3682 3596 6 1789 1197 102 68 0 chr3 157860463 157860640 -1739143 - B2_Mm2 SINE B2 -5 190 2 6 1789 405 315 72 32 chr3 157861734 157862013 -1737770 - B4A SINE B4 -2 290 1 6 1789 566 255 245 21 chr3 157865687 157866075 -1733708 + L1MB8 LINE L1 5667 6141 -37 6 1789 2674 173 19 78 chr3 157866239 157866779 -1733004 + RLTR18B LTR ERVK 1 508 -4 6 1789 27 0 0 0 chr3 157866916 157866943 -1732840 + AT_rich Low_complexity Low_complexity 1 27 0 6 1789 964 309 47 4 chr3 157867225 157867482 -1732301 + B4A SINE B4 10 277 -15 6 1789 420 82 0 0 chr3 157867485 157867546 -1732237 + (CA)n Simple_repeat Simple_repeat 1 61 0 6 1789 451 285 52 109 chr3 157868056 157868149 -1731634 + MER2 DNA MER2_type 164 256 -89 6 1789 867 20 0 0 chr3 157868149 157868250 -1731533 + (TTTC)n Simple_repeat Simple_repeat 4 104 0 6 1789 1043 36 0 14 chr3 157868252 157868391 -1731392 - L1Md_F2 LINE L1 -13 6569 6433 6 1789 451 285 52 109 chr3 157868391 157868487 -1731296 + MER2 DNA MER2_type 257 345 0 6 1789 21 71 0 0 chr3 157868854 157868896 -1730887 + AT_rich Low_complexity Low_complexity 1 42 0 6 1789 323 331 77 50 chr3 157869241 157869422 -1730361 - LTR16A LTR ERVL -230 221 36 6 1789 1125 123 0 0 chr3 157870232 157870395 -1729388 - B2_Mm2 SINE B2 -32 163 1 6 1789 450 65 0 0 chr3 157870841 157870903 -1728880 + (CA)n Simple_repeat Simple_repeat 2 63 0 6 1789 25 31 0 0 chr3 157871016 157871048 -1728735 + AT_rich Low_complexity Low_complexity 1 32 0 6 1789 347 287 47 39 chr3 157871217 157871344 -1728439 - Tigger7 DNA MER2_type 0 2491 2364 6 1789 709 240 7 7 chr3 157871407 157871554 -1728229 + B1_Mus2 SINE Alu 1 147 0 6 1789 251 54 27 0 chr3 157871556 157871593 -1728190 + (TAAA)n Simple_repeat Simple_repeat 3 40 0 6 1789 1067 196 14 29 chr3 157873082 157873292 -1726491 - B3 SINE B2 0 216 10 6 1789 519 60 0 0 chr3 157873382 157873449 -1726334 + (TC)n Simple_repeat Simple_repeat 1 67 0 6 1789 465 264 220 0 chr3 157874796 157874978 -1724805 - ID_B1 SINE B4 -2 222 1 6 1789 242 254 14 14 chr3 157875188 157875260 -1724523 - MLT1A1 LTR MaLR 0 408 337 6 1789 251 349 45 45 chr3 157875461 157875593 -1724190 - ORR1E LTR MaLR -222 137 6 6 1789 260 268 14 0 chr3 157877481 157877552 -1722231 + Arthur1B DNA Tip100 265 336 -889 6 1789 1542 106 60 4 chr3 157879099 157879174 -1720609 + L1_Mm LINE L1 5156 5231 -652 6 1789 552 30 0 0 chr3 157879174 157879240 -1720543 + (CA)n Simple_repeat Simple_repeat 1 66 0 6 1789 1542 106 60 4 chr3 157879240 157879430 -1720353 + L1_Mm LINE L1 5232 5434 -449 6 1789 4000 66 2 40 chr3 157879430 157879982 -1719801 + L1_Mus2 LINE L1 6036 6566 0 6 1789 221 375 67 9 chr3 157880528 157880633 -1719150 + L2b LINE L2 3033 3143 -232 6 1789 235 212 25 0 chr3 157881137 157881217 -1718566 + (TATATG)n Simple_repeat Simple_repeat 3 84 0 6 1789 4712 90 24 62 chr3 157881792 157882572 -1717211 - RMER17A LTR ERVK 0 751 1 6 1789 263 403 45 0 chr3 157884896 157885030 -1714753 + Arthur1 DNA Tip100 195 334 -3613 6 1789 194 311 90 85 chr3 157885078 157885289 -1714494 + L2 LINE L2 2622 2833 -586 6 1789 1370 229 164 0 chr3 157886017 157886370 -1713413 - MTD LTR MaLR -8 411 1 6 1789 460 275 42 7 chr3 157886370 157886513 -1713270 - MTD-int LTR MaLR 0 1258 1111 6 1789 235 103 172 0 chr3 157886515 157886573 -1713210 + Lx5 LINE L1 6983 7050 0 6 1789 904 73 8 16 chr3 157886584 157886710 -1713073 + B1_Mm SINE Alu 23 147 0 6 1789 333 149 0 0 chr3 157886710 157886777 -1713006 + (A)n Simple_repeat Simple_repeat 1 67 0 6 1789 3254 226 122 57 chr3 157886782 157887762 -1712021 - MTD-int LTR MaLR -151 1107 64 6 1789 478 233 29 19 chr3 157887734 157887839 -1711944 - MTD LTR MaLR -313 106 1 6 1789 363 136 0 0 chr3 157888304 157888363 -1711420 + (TC)n Simple_repeat Simple_repeat 2 60 0 6 1789 1190 199 60 15 chr3 157889801 157890067 -1709716 - Lx2A1 LINE L1 0 7008 6731 6 1789 351 172 0 0 chr3 157890067 157890125 -1709658 - B2_Mm2 SINE B2 -113 82 25 6 1789 415 89 0 15 chr3 157890250 157890318 -1709465 - L1_Mus3 LINE L1 -10 6628 6562 6 1789 649 59 0 0 chr3 157890320 157890405 -1709378 - L1_Mus4 LINE L1 -769 5867 5783 6 1789 18830 118 23 13 chr3 157890397 157894206 -1705577 - L1_Mus3 LINE L1 -3 6635 2796 6 1789 20568 149 78 21 chr3 157894208 157900068 -1699715 - L1Md_F2 LINE L1 -2 6580 366 6 1789 335 295 32 32 chr3 157900287 157900413 -1699370 + L1MEd LINE L1 1119 1244 -4875 6 1789 497 311 112 72 chr3 157900504 157900809 -1698974 + MLT1A0 LTR MaLR 30 346 -19 6 1789 360 0 0 0 chr3 157900809 157900849 -1698934 + (CA)n Simple_repeat Simple_repeat 2 41 0 6 1789 2156 125 44 44 chr3 157900916 157901283 -1698500 + ORR1B2 LTR MaLR 1 367 0 6 1789 183 114 0 0 chr3 157901521 157901556 -1698227 + (T)n Simple_repeat Simple_repeat 1 35 0 6 1789 664 314 73 22 chr3 157901714 157901893 -1697890 + B3A SINE B2 2 189 -9 6 1789 395 266 9 27 chr3 157902557 157902669 -1697114 - MIRb SINE MIR -59 209 100 6 1789 206 336 187 13 chr3 157904289 157904524 -1695259 - L2a LINE L2 -21 3405 3130 6 1789 27 62 0 0 chr3 157905621 157905669 -1694114 + AT_rich Low_complexity Low_complexity 1 48 0 6 1789 2377 191 73 5 chr3 157905691 157906357 -1693426 + Lx7 LINE L1 5346 6059 -1637 6 1789 999 118 0 0 chr3 157906357 157906493 -1693290 + B1_Mus1 SINE Alu 1 136 -12 6 1789 306 0 0 0 chr3 157906493 157906527 -1693256 + (CAAA)n Simple_repeat Simple_repeat 3 36 0 6 1789 2190 211 38 12 chr3 157906527 157906627 -1693156 + Lx7 LINE L1 6060 6164 -1532 6 1789 4821 212 55 21 chr3 157906622 157907683 -1692100 + Lx7 LINE L1 5860 6956 -740 7 1789 232 327 28 37 chr3 157908150 157908258 -1691525 - MER20 DNA MER1_type -3 216 110 7 1789 458 274 59 7 chr3 157909023 157909042 -1690741 - B4 SINE B4 -64 228 86 7 1789 631 222 8 0 chr3 157909042 157909159 -1690624 - B1_Mur2 SINE Alu -31 118 1 7 1789 506 235 9 9 chr3 157909817 157909933 -1689850 - MER58B DNA MER1_type -3 338 223 7 1789 1272 81 0 0 chr3 157909964 157910138 -1689645 + (TCTA)n Simple_repeat Simple_repeat 3 176 0 7 1789 687 272 0 72 chr3 157910184 157910406 -1689377 - B3 SINE B2 -9 207 2 7 1789 342 379 24 0 chr3 157911332 157911456 -1688327 + RSINE1 SINE B4 3 129 -36 7 1789 354 107 0 0 chr3 157911456 157911512 -1688271 + (TG)n Simple_repeat Simple_repeat 1 56 0 7 1789 985 303 25 31 chr3 157911518 157911804 -1687979 - B4A SINE B4 -8 284 1 7 1789 24 0 0 0 chr3 157912157 157912181 -1687602 + AT_rich Low_complexity Low_complexity 1 24 0 7 1789 888 87 0 0 chr3 157912850 157912977 -1686806 + (TG)n Simple_repeat Simple_repeat 2 128 0 7 1789 34 55 0 0 chr3 157913610 157913665 -1686118 + AT_rich Low_complexity Low_complexity 1 55 0 7 1789 1146 42 14 0 chr3 157914023 157914165 -1685618 + B1_Mm SINE Alu 1 144 -3 7 1789 256 83 42 0 chr3 157915230 157915278 -1684505 + (CAA)n Simple_repeat Simple_repeat 2 51 0 7 1789 349 258 141 43 chr3 157917241 157917557 -1682226 + L1ME1 LINE L1 5677 6020 -144 7 1789 27 0 0 0 chr3 157917803 157917830 -1681953 + AT_rich Low_complexity Low_complexity 1 27 0 7 1789 244 244 64 85 chr3 157918577 157918671 -1681112 + MIR SINE MIR 114 205 -57 7 1789 25 0 0 0 chr3 157918885 157918910 -1680873 + AT_rich Low_complexity Low_complexity 1 25 0 7 1789 792 302 48 26 chr3 157919071 157919343 -1680440 + B4A SINE B4 5 282 -10 7 1789 270 0 0 0 chr3 157919387 157919417 -1680366 + (TG)n Simple_repeat Simple_repeat 1 30 0 7 1789 276 130 0 0 chr3 157919419 157919465 -1680318 + (CA)n Simple_repeat Simple_repeat 1 46 0 7 1789 255 262 0 0 chr3 157919521 157919582 -1680201 - L1M2 LINE L1 -607 5705 5645 7 1789 1189 289 80 28 chr3 157920542 157921123 -1678660 + L1MA4 LINE L1 5314 5937 -363 7 1789 303 49 0 0 chr3 157921289 157921330 -1678453 + (TTAAA)n Simple_repeat Simple_repeat 1 41 0 7 1789 300 303 69 44 chr3 157922023 157922182 -1677601 + L1MB8 LINE L1 5853 6015 -163 7 1789 771 331 59 9 chr3 157922593 157922916 -1676867 + Lx7 LINE L1 6948 7286 -410 7 1789 474 18 0 0 chr3 157922924 157922979 -1676804 + (CA)n Simple_repeat Simple_repeat 2 56 0 7 1789 247 305 0 12 chr3 157922992 157923075 -1676708 + GA-rich Low_complexity Low_complexity 2 83 0 7 1789 566 271 8 0 chr3 157923364 157923486 -1676297 - B1F1 SINE Alu -19 130 8 7 1789 1003 298 86 23 chr3 157923807 157923923 -1675860 + Lx8 LINE L1 6059 6198 -1275 7 1789 242 95 24 0 chr3 157923923 157923965 -1675818 + (CAA)n Simple_repeat Simple_repeat 3 45 0 7 1789 1003 298 86 23 chr3 157923965 157924278 -1675505 + Lx8 LINE L1 6199 6515 -958 7 1789 26 30 0 0 chr3 157924404 157924437 -1675346 + AT_rich Low_complexity Low_complexity 1 33 0 7 1789 30 74 0 31 chr3 157924477 157924575 -1675208 + AT_rich Low_complexity Low_complexity 1 95 0 7 1789 195 100 0 0 chr3 157926883 157926913 -1672870 + (TCCA)n Simple_repeat Simple_repeat 3 32 0 7 1789 1407 11 17 0 chr3 157926918 157927095 -1672688 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 7 1789 396 0 0 0 chr3 157927125 157927169 -1672614 + (TCCA)n Simple_repeat Simple_repeat 1 44 0 7 1789 453 264 0 54 chr3 157927243 157927355 -1672428 + PB1D10 SINE Alu 7 112 -5 7 1789 34 24 0 0 chr3 157927484 157927525 -1672258 + AT_rich Low_complexity Low_complexity 1 41 0 7 1789 29 70 0 0 chr3 157927828 157927885 -1671898 + AT_rich Low_complexity Low_complexity 1 57 0 7 1789 322 264 36 0 chr3 157928502 157928642 -1671141 - Lx9 LINE L1 -8 7636 7492 7 1789 23 0 0 0 chr3 157929044 157929067 -1670716 + AT_rich Low_complexity Low_complexity 1 23 0 7 1789 1640 235 136 24 chr3 157929068 157929191 -1670592 - Lx9 LINE L1 -8 7636 7478 7 1789 528 16 0 0 chr3 157929191 157929252 -1670531 + (CA)n Simple_repeat Simple_repeat 2 62 0 7 1789 1640 235 136 24 chr3 157929252 157929634 -1670149 - Lx9 LINE L1 -167 7477 7074 7 1789 23 0 0 0 chr3 157929664 157929687 -1670096 + AT_rich Low_complexity Low_complexity 1 23 0 7 1789 343 340 12 35 chr3 157930595 157930738 -1669045 - B1F SINE Alu -2 147 5 7 1789 241 326 99 53 chr3 157931497 157931545 -1668238 + MLT1B LTR MaLR 139 197 -193 7 1789 276 30 0 0 chr3 157931545 157931578 -1668205 + (CA)n Simple_repeat Simple_repeat 2 34 0 7 1789 241 326 99 53 chr3 157931578 157931681 -1668102 + MLT1B LTR MaLR 198 297 -93 7 1789 192 77 0 0 chr3 157932029 157932055 -1667728 + (TC)n Simple_repeat Simple_repeat 1 26 0 7 1789 463 245 39 11 chr3 157932727 157932879 -1666904 - L1Md_F LINE L1 -5813 806 567 7 1789 4670 64 11 37 chr3 157932896 157933545 -1666238 + L1_Mus2 LINE L1 5935 6566 0 7 1789 254 29 0 28 chr3 157933906 157933942 -1665841 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 7 1789 193 295 269 0 chr3 157935706 157935784 -1663999 - L2b LINE L2 -225 3150 3052 7 1789 590 39 13 0 chr3 157936191 157936268 -1663515 + (CA)n Simple_repeat Simple_repeat 1 78 0 7 1789 459 52 0 0 chr3 157936268 157936326 -1663457 + (TG)n Simple_repeat Simple_repeat 2 59 0 7 1789 509 349 23 26 chr3 157936326 157936591 -1663192 - Lx9 LINE L1 -235 7409 7146 7 1789 202 239 11 11 chr3 157936654 157936747 -1663036 + CT-rich Low_complexity Low_complexity 2 94 0 7 1789 606 352 59 25 chr3 157936748 157936987 -1662796 - B4 SINE B4 -44 248 2 7 1789 480 233 104 52 chr3 157939020 157939174 -1660609 + B3 SINE B2 42 203 -13 7 1789 690 101 0 0 chr3 157939400 157939499 -1660284 + L1_Mur2 LINE L1 4028 4126 -1751 7 1789 258 105 0 0 chr3 157940667 157940705 -1659078 + (TGAA)n Simple_repeat Simple_repeat 3 40 0 7 1789 339 369 166 21 chr3 157940765 157941429 -1658354 + L2 LINE L2 1648 2407 -1012 7 1790 2155 59 3 36 chr3 157942180 157942481 -1657302 - L1_Mus2 LINE L1 0 6566 6276 7 1790 24 67 0 0 chr3 157943359 157943404 -1656379 + AT_rich Low_complexity Low_complexity 1 45 0 7 1790 10359 60 18 20 chr3 157943744 157945129 -1654654 + Lx3_Mus LINE L1 5628 7009 0 7 1790 23 33 0 0 chr3 157945129 157945159 -1654624 + AT_rich Low_complexity Low_complexity 1 30 0 7 1790 291 114 0 0 chr3 157945172 157945216 -1654567 + (A)n Simple_repeat Simple_repeat 1 44 0 7 1790 24 0 0 0 chr3 157946625 157946649 -1653134 + AT_rich Low_complexity Low_complexity 1 24 0 7 1790 261 174 31 52 chr3 157946730 157946827 -1652956 + (TTATA)n Simple_repeat Simple_repeat 3 97 0 7 1790 389 279 35 35 chr3 157948186 157948331 -1651452 + RLTR42-int LTR ERVK 1223 1367 -4155 7 1790 1012 76 23 0 chr3 157948752 157948884 -1650899 - B1_Mus1 SINE Alu -12 136 2 7 1790 246 81 0 0 chr3 157949887 157949924 -1649859 + (CCAA)n Simple_repeat Simple_repeat 4 40 0 7 1790 326 211 14 27 chr3 157952124 157952197 -1647586 - B3 SINE B2 0 216 145 7 1790 4057 126 134 68 chr3 157955258 157956103 -1643680 + RLTR13D6 LTR ERVK 2 902 0 7 1790 500 159 93 26 chr3 157956962 157957078 -1642705 - B1_Mur1 SINE Alu -20 129 2 7 1790 553 309 102 10 chr3 157957641 157957837 -1641946 - B3 SINE B2 -2 214 1 7 1790 383 290 104 30 chr3 157958620 157958755 -1641028 - RSINE1 SINE B4 -19 146 2 7 1790 374 360 0 35 chr3 157958763 157958907 -1640876 - B1F SINE Alu -8 141 3 7 1790 365 287 32 0 chr3 157959529 157959623 -1640160 + PB1D10 SINE Alu 10 106 -11 7 1790 22 35 0 0 chr3 157960686 157960715 -1639068 + AT_rich Low_complexity Low_complexity 1 29 0 7 1790 266 294 122 0 chr3 157960790 157960918 -1638865 + MIRc SINE MIR 22 165 -97 7 1790 253 314 130 31 chr3 157961631 157962023 -1637760 + L1M5 LINE L1 3536 3970 -2176 7 1790 649 0 25 0 chr3 157962344 157962425 -1637358 + (CA)n Simple_repeat Simple_repeat 2 84 0 7 1790 25 65 0 0 chr3 157962854 157962900 -1636883 + AT_rich Low_complexity Low_complexity 1 46 0 7 1790 256 320 50 38 chr3 157963113 157963272 -1636511 + L1MD LINE L1 4772 4932 -1214 7 1790 2838 171 10 2 chr3 157964382 157964867 -1634916 - Lx4A LINE L1 -2 7056 6568 7 1790 268 252 64 7 chr3 157964940 157964972 -1634811 + ORR1B1-int LTR MaLR 607 646 -863 7 1790 919 135 16 7 chr3 157964972 157965124 -1634659 + B1_Mus1 SINE Alu 1 295 -16 7 1790 224 291 0 160 chr3 157967310 157967404 -1632379 + B1_Mus1 SINE Alu 10 88 -60 7 1790 529 61 0 24 chr3 157967746 157967830 -1631953 + (TG)n Simple_repeat Simple_repeat 1 82 0 7 1790 658 275 131 11 chr3 157967830 157968013 -1631770 - B4A SINE B4 -32 260 54 7 1790 2796 68 0 19 chr3 157968109 157968483 -1631300 + L1_Mus2 LINE L1 6199 6565 -1 7 1790 248 323 77 47 chr3 157969074 157969243 -1630540 - L2a LINE L2 0 3426 3253 7 1790 263 351 29 15 chr3 157969292 157969428 -1630355 - L2a LINE L2 -834 2585 2448 7 1790 545 285 84 6 chr3 157969533 157969699 -1630084 + B3A SINE B2 2 180 -18 7 1790 246 222 0 0 chr3 157969758 157969848 -1629935 + (CA)n Simple_repeat Simple_repeat 1 90 0 7 1790 325 331 147 45 chr3 157969857 157969995 -1629788 - L2a LINE L2 -1078 2341 2183 7 1790 189 0 0 0 chr3 157969995 157970016 -1629767 + (CAAA)n Simple_repeat Simple_repeat 4 24 0 7 1790 325 331 147 45 chr3 157970016 157970583 -1629200 - L2a LINE L2 -1237 2182 1566 7 1790 1915 208 75 3 chr3 157973954 157974339 -1625444 - MTC LTR MaLR -8 413 1 7 1790 271 259 49 12 chr3 157974895 157974977 -1624806 - L1MA6 LINE L1 -49 6251 6167 7 1790 812 231 19 0 chr3 157975744 157975900 -1623883 + RSINE1 SINE B4 7 165 0 7 1790 353 165 33 0 chr3 157975900 157976021 -1623762 + (CA)n Simple_repeat Simple_repeat 1 125 0 7 1790 344 182 32 64 chr3 157976021 157976115 -1623668 + HAL1-3A_ME LINE L1 1976 2066 -792 8 1790 511 219 164 21 chr3 157976545 157976685 -1623098 + B3 SINE B2 57 216 0 8 1790 246 354 86 30 chr3 157976972 157977170 -1622613 - L2c LINE L2 -139 3248 3040 8 1790 202 336 77 39 chr3 157977687 157977842 -1621941 - L2c LINE L2 -948 2471 2311 8 1790 583 270 112 0 chr3 157979408 157979586 -1620197 - B3A SINE B2 0 198 1 8 1790 249 293 136 32 chr3 157979968 157980123 -1619660 - L2a LINE L2 -4 3422 3252 8 1790 25 51 0 0 chr3 157981291 157981330 -1618453 + AT_rich Low_complexity Low_complexity 1 39 0 8 1790 232 224 68 17 chr3 157983197 157983256 -1616527 + Kanga1 DNA Tc2 19 80 -1665 8 1790 2173 229 52 19 chr3 157983263 157983923 -1615860 - RMER1B Other Other 0 1066 230 8 1790 1325 232 35 76 chr3 157984807 157985473 -1614310 - RLTR18 LTR ERVK -6 506 12 8 1790 7167 154 24 18 chr3 157986137 157987443 -1612340 + RMER12B LTR ERVK 1 1263 -141 8 1790 186 43 0 0 chr3 157987443 157987466 -1612317 + (TG)n Simple_repeat Simple_repeat 2 24 0 8 1790 636 270 101 36 chr3 157987466 157987597 -1612186 + RMER12B LTR ERVK 1264 1404 0 8 1790 492 255 60 20 chr3 157988173 157988373 -1611410 + L1MA6 LINE L1 6093 6300 0 8 1790 226 219 51 64 chr3 157988477 157988555 -1611228 + Charlie1 DNA MER1_type 916 992 -1789 8 1790 310 309 39 56 chr3 157988562 157988795 -1610988 + L1MEe LINE L1 339 567 -4287 8 1790 241 253 40 13 chr3 157991281 157991357 -1608426 - ID4_ SINE ID -3 80 3 8 1790 225 0 0 0 chr3 157991438 157991463 -1608320 + (TTTA)n Simple_repeat Simple_repeat 3 27 0 8 1790 568 159 0 0 chr3 157992077 157992165 -1607618 + (TTAGGC)n Simple_repeat Simple_repeat 2 89 0 8 1790 21 57 0 0 chr3 157994729 157994764 -1605019 + AT_rich Low_complexity Low_complexity 1 35 0 8 1790 310 283 78 78 chr3 157994848 157995028 -1604755 - MER102a DNA MER1_type -76 254 75 8 1790 994 204 5 5 chr3 157995217 157995414 -1604369 + L1_Mur3 LINE L1 3898 4094 -1786 8 1790 27065 92 17 9 chr3 157995414 158000000 -1599783 + L1Md_F LINE L1 338 4955 -928 8 1790 4717 72 2 2 chr3 158000000 158000623 -1599160 + L1Md_F2 LINE L1 4956 5578 -305 1 1790 7092 69 22 33 chr3 158000631 158001638 -1598145 + L1Md_F2 LINE L1 5587 6582 0 1 1790 3639 211 93 8 chr3 158001727 158002683 -1597100 + L1_Mur3 LINE L1 4089 5125 -755 2 1790 199 308 25 13 chr3 158002893 158002972 -1596811 + MIRb SINE MIR 105 184 -84 3 1790 857 232 23 19 chr3 158003499 158003714 -1596069 - B3 SINE B2 0 216 1 4 1790 21 0 0 0 chr3 158004117 158004138 -1595645 + AT_rich Low_complexity Low_complexity 1 21 0 5 1790 236 260 27 0 chr3 158005912 158005985 -1593798 + (TG)n Simple_repeat Simple_repeat 1 75 0 6 1790 204 115 56 37 chr3 158006338 158006392 -1593391 + (TTTA)n Simple_repeat Simple_repeat 2 56 0 7 1790 1133 311 26 0 chr3 158006486 158006756 -1593027 - B4A SINE B4 0 292 16 8 1790 212 286 42 28 chr3 158006693 158006765 -1593018 - BC1_Mm scRNA scRNA -76 76 4 9 1790 233 346 107 38 chr3 158007014 158007173 -1592610 - MIRc SINE MIR -67 201 32 1 1790 590 299 32 36 chr3 158007268 158007546 -1592237 + Lx7 LINE L1 5594 5870 -1826 1 1790 32639 67 5 3 chr3 158007613 158012523 -1587260 + L1Md_F2 LINE L1 371 5297 -586 1 1790 2380 11 0 0 chr3 158012523 158012792 -1586991 + L1Md_A LINE L1 6314 6582 0 1 1790 32639 70 6 3 chr3 158012792 158013086 -1586697 + L1Md_F2 LINE L1 5298 5586 -297 1 1790 7916 60 0 0 chr3 158013086 158014082 -1585701 + L1Md_F2 LINE L1 5587 6582 0 1 1790 207 212 26 13 chr3 158014619 158014772 -1585011 + (TA)n Simple_repeat Simple_repeat 2 156 0 1 1790 27 100 0 0 chr3 158017262 158017352 -1582431 + AT_rich Low_complexity Low_complexity 1 90 0 1 1790 216 0 0 0 chr3 158017424 158017448 -1582335 + (TG)n Simple_repeat Simple_repeat 2 25 0 1 1790 469 222 5 105 chr3 158017523 158017698 -1582085 - B4 SINE B4 -69 223 5 1 1790 460 246 0 3 chr3 158017739 158017840 -1581943 + B3A SINE B2 1 98 -118 1 1790 28 61 0 0 chr3 158017894 158017943 -1581840 + AT_rich Low_complexity Low_complexity 1 49 0 1 1790 202 338 0 0 chr3 158018465 158018533 -1581250 + (TATG)n Simple_repeat Simple_repeat 3 70 0 2 1790 324 331 54 65 chr3 158018613 158018781 -1581002 - B4 SINE B4 -124 168 3 2 1790 532 308 44 33 chr3 158019006 158019278 -1580505 - HAL1 LINE L1 -687 1820 1546 2 1790 365 283 33 0 chr3 158019818 158019938 -1579845 - HAL1 LINE L1 -1602 905 782 2 1790 594 340 108 24 chr3 158020100 158020350 -1579433 - B4 SINE B4 -6 286 16 2 1790 487 246 49 33 chr3 158021491 158021613 -1578170 + RSINE1 SINE B4 3 126 -39 2 1790 51 42 0 0 chr3 158021629 158021701 -1578082 + AT_rich Low_complexity Low_complexity 1 72 0 2 1790 5121 223 44 10 chr3 158021902 158022965 -1576818 - Lx6 LINE L1 -9 7451 6353 2 1790 2969 116 28 24 chr3 158023348 158023815 -1575968 + Lx5 LINE L1 5587 6055 -995 2 1790 316 297 71 18 chr3 158024434 158024547 -1575236 + PB1D7 SINE Alu 2 120 0 2 1790 182 37 37 0 chr3 158024578 158024605 -1575178 + (TTTTC)n Simple_repeat Simple_repeat 2 29 0 2 1790 239 87 43 0 chr3 158026128 158026174 -1573609 + (CATATA)n Simple_repeat Simple_repeat 4 51 0 3 1790 228 67 0 0 chr3 158027136 158027166 -1572617 + (TA)n Simple_repeat Simple_repeat 2 31 0 3 1790 389 274 81 25 chr3 158028473 158028634 -1571149 + MLT1C LTR MaLR 1 170 -297 3 1790 252 231 215 18 chr3 158029599 158029762 -1570021 + Lx9 LINE L1 7402 7596 -48 3 1790 2397 251 35 6 chr3 158030382 158030902 -1568881 + Lx6 LINE L1 6924 7458 -2 3 1790 266 281 204 25 chr3 158031116 158031273 -1568510 + Lx8 LINE L1 7039 7223 -250 3 1790 252 304 78 30 chr3 158032444 158032610 -1567173 + L2c LINE L2 3031 3204 -183 3 1790 205 152 0 0 chr3 158033179 158033212 -1566571 + (CA)n Simple_repeat Simple_repeat 2 34 0 3 1790 221 237 53 0 chr3 158033347 158033423 -1566360 + CT-rich Low_complexity Low_complexity 3 82 0 3 1790 7670 61 34 2 chr3 158033423 158034900 -1564883 - L1Md_F2 LINE L1 -2 6580 5070 3 1790 668 301 12 6 chr3 158034932 158035099 -1564684 + B4 SINE B4 113 280 -12 4 1790 695 319 34 47 chr3 158035874 158036141 -1563642 + B4A SINE B4 1 269 -23 4 1790 378 0 0 0 chr3 158036141 158036183 -1563600 + (CA)n Simple_repeat Simple_repeat 2 43 0 4 1790 695 319 34 47 chr3 158036183 158036211 -1563572 + B4A SINE B4 270 292 0 4 1790 3998 161 26 14 chr3 158036379 158037067 -1562716 + Lx4A LINE L1 6359 7054 -4 4 1790 304 171 83 24 chr3 158038771 158038855 -1560928 - Lx5 LINE L1 -3 7047 6959 4 1790 403 68 0 0 chr3 158038889 158038948 -1560835 + L1_Mus2 LINE L1 6508 6566 0 4 1790 264 310 76 19 chr3 158039000 158039158 -1560625 - LTR55 LTR ERV -28 520 354 4 1790 404 276 19 99 chr3 158040038 158040199 -1559584 - RSINE1 SINE B4 0 165 18 4 1790 752 0 11 0 chr3 158040435 158040523 -1559260 + (TCTA)n Simple_repeat Simple_repeat 2 90 0 4 1790 302 140 0 0 chr3 158040524 158040574 -1559209 - Lx3A LINE L1 -10 6971 6922 4 1790 727 145 0 21 chr3 158040575 158040716 -1559067 + CT-rich Low_complexity Low_complexity 3 140 0 5 1790 1368 67 0 0 chr3 158040720 158040900 -1558883 + (TTC)n Simple_repeat Simple_repeat 1 180 0 5 1790 248 0 31 0 chr3 158040900 158040932 -1558851 + (TCC)n Simple_repeat Simple_repeat 2 34 0 5 1790 408 40 0 0 chr3 158040932 158040982 -1558801 + (TC)n Simple_repeat Simple_repeat 2 51 0 5 1790 722 223 7 0 chr3 158040982 158041121 -1558662 - B1_Mur1 SINE Alu -9 140 1 5 1790 29 0 0 0 chr3 158041765 158041794 -1557989 + AT_rich Low_complexity Low_complexity 1 29 0 5 1790 416 304 108 28 chr3 158043369 158043619 -1556164 + L1MA9 LINE L1 1579 1848 -5320 5 1790 577 261 119 30 chr3 158043790 158044125 -1555658 + L1MA9 LINE L1 2103 2467 -4701 5 1790 552 30 0 0 chr3 158044133 158044199 -1555584 + (GA)n Simple_repeat Simple_repeat 1 66 0 5 1790 408 316 51 26 chr3 158044242 158044359 -1555424 - B1F SINE Alu -2 147 28 5 1790 396 296 93 98 chr3 158044364 158044814 -1554969 + L1MA9 LINE L1 2550 2997 -4171 5 1790 477 281 167 20 chr3 158045283 158045492 -1554291 + L1MA9 LINE L1 3227 3463 -3701 5 1790 429 54 0 0 chr3 158045492 158045548 -1554235 + (TA)n Simple_repeat Simple_repeat 2 57 0 5 1790 477 281 167 20 chr3 158045548 158045745 -1554038 + L1MA9 LINE L1 3464 3693 -3471 5 1790 279 0 0 0 chr3 158045768 158045799 -1553984 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 6 1790 213 204 0 0 chr3 158045809 158045853 -1553930 + (CCAA)n Simple_repeat Simple_repeat 4 47 0 6 1790 1887 304 135 68 chr3 158045855 158046459 -1553324 + L1MA9 LINE L1 3636 4284 -2877 5 1790 286 23 0 44 chr3 158046459 158046504 -1553279 + (TA)n Simple_repeat Simple_repeat 2 44 0 6 1790 1887 304 135 68 chr3 158046504 158046673 -1553110 + L1MA9 LINE L1 4285 4482 -2679 5 1790 863 251 104 67 chr3 158046673 158047019 -1552764 - ORR1E LTR MaLR 0 359 1 6 1790 1887 304 135 68 chr3 158047019 158047056 -1552727 + L1MA9 LINE L1 4483 4518 -2643 5 1790 306 0 0 0 chr3 158047056 158047090 -1552693 + (CAA)n Simple_repeat Simple_repeat 1 34 0 6 1790 1887 292 135 58 chr3 158047090 158047278 -1552505 + L1MA9 LINE L1 4519 4729 -2595 5 1790 283 308 2 27 chr3 158047278 158047371 -1552412 + B4 SINE B4 4 94 -198 6 1790 1887 292 135 58 chr3 158047371 158049142 -1550641 + L1MA9 LINE L1 4730 6725 -599 5 1790 268 241 23 35 chr3 158049264 158049350 -1550433 + L1MA9 LINE L1 6866 6950 -383 5 1790 274 229 0 20 chr3 158049375 158049473 -1550310 + GA-rich Low_complexity Low_complexity 4 99 0 6 1790 12409 87 13 45 chr3 158049485 158051344 -1548439 + RLTR22_Mur LTR ERVK 1 1804 -44 6 1790 4605 98 53 11 chr3 158051344 158052058 -1547725 + Lx LINE L1 5908 6651 -3 6 1790 252 0 0 0 chr3 158052067 158052095 -1547688 + (TAA)n Simple_repeat Simple_repeat 3 30 0 6 1790 12409 87 13 45 chr3 158052095 158052131 -1547652 + RLTR22_Mur LTR ERVK 1805 1844 -4 6 1790 285 239 15 15 chr3 158052142 158052210 -1547573 + GA-rich Low_complexity Low_complexity 4 71 0 7 1790 264 30 0 0 chr3 158052737 158052770 -1547013 + (TG)n Simple_repeat Simple_repeat 1 33 0 7 1790 234 376 3 3 chr3 158053225 158053321 -1546462 + MIR SINE MIR 23 118 -150 7 1790 256 275 71 27 chr3 158053674 158053786 -1545997 + PB1D10 SINE Alu 1 117 0 7 1790 216 0 0 0 chr3 158054081 158054105 -1545678 + (CA)n Simple_repeat Simple_repeat 2 25 0 7 1790 22 70 0 0 chr3 158054422 158054465 -1545318 + AT_rich Low_complexity Low_complexity 1 43 0 7 1790 468 178 0 0 chr3 158055402 158055509 -1544274 + (TG)n Simple_repeat Simple_repeat 1 107 0 7 1790 1241 171 18 0 chr3 158056591 158056813 -1542970 + URR1A DNA MER1_type 1 226 0 7 1790 347 267 45 70 chr3 158058499 158058656 -1541127 + Tigger5 DNA MER2_type 7 159 -2247 7 1790 2289 120 14 6 chr3 158060191 158060543 -1539240 + Lx2 LINE L1 6636 6990 -7 7 1790 571 243 150 0 chr3 158061921 158062061 -1537722 - ID_B1 SINE B4 -12 212 52 8 1790 27 73 0 0 chr3 158062077 158062132 -1537651 + AT_rich Low_complexity Low_complexity 1 55 0 8 1790 244 226 0 0 chr3 158062691 158062753 -1537030 + L1MEg LINE L1 689 750 -5485 8 1790 469 328 136 64 chr3 158062983 158063456 -1536327 + L1MEg LINE L1 1858 2353 -4980 8 1790 315 49 0 0 chr3 158063456 158063497 -1536286 + (CCAA)n Simple_repeat Simple_repeat 3 43 0 8 1790 469 328 136 64 chr3 158063497 158063603 -1536180 + L1MEg LINE L1 2354 2479 -4854 8 1790 329 245 108 0 chr3 158063641 158063743 -1536040 + L1M4 LINE L1 5331 5443 -741 8 1790 246 219 27 27 chr3 158064044 158064119 -1535664 + GA-rich Low_complexity Low_complexity 2 76 0 8 1790 534 85 32 0 chr3 158064166 158064260 -1535523 + (TAGA)n Simple_repeat Simple_repeat 2 98 0 8 1790 791 21 0 10 chr3 158064312 158064410 -1535373 + (TTC)n Simple_repeat Simple_repeat 1 97 0 8 1790 582 285 155 47 chr3 158065597 158066411 -1533372 + L1M2 LINE L1 1724 2625 -4224 8 1790 279 79 0 0 chr3 158066434 158066472 -1533311 + (A)n Simple_repeat Simple_repeat 1 38 0 8 1790 6151 127 53 11 chr3 158066472 158067887 -1531896 + Lx3C LINE L1 5162 6634 -342 9 1790 5489 97 9 7 chr3 158067887 158068697 -1531086 + RLTR22_Mur LTR ERVK 1 811 -1037 9 1790 293 309 121 73 chr3 158068874 158069080 -1530703 + RMER12 LTR ERVK 1101 1316 -6 9 1790 2071 107 29 43 chr3 158069084 158069435 -1530348 + Lx3C LINE L1 6629 6974 -2 9 1790 312 137 0 0 chr3 158069436 158069487 -1530296 + (TAA)n Simple_repeat Simple_repeat 1 51 0 9 1790 653 234 106 18 chr3 158069663 158069889 -1529894 + L1_Rod LINE L1 4481 4726 -1121 9 1790 3133 306 98 53 chr3 158069876 158070817 -1528966 + L1_Mur3 LINE L1 2430 3401 -2479 9 1790 1076 68 0 40 chr3 158070817 158070969 -1528814 + B1_Mus2 SINE Alu 2 147 0 9 223 3133 306 98 53 chr3 158070969 158073081 -1526702 + L1_Mur3 LINE L1 3402 5618 -262 9 1791 333 0 0 0 chr3 158073430 158073467 -1526316 + (TC)n Simple_repeat Simple_repeat 1 37 0 9 1791 641 284 77 54 chr3 158074037 158074335 -1525448 - Lx8 LINE L1 -56 7417 7113 9 1791 242 299 0 22 chr3 158074328 158074417 -1525366 + Lx7 LINE L1 6989 7075 -621 1 1791 21 57 0 0 chr3 158075188 158075223 -1524560 + AT_rich Low_complexity Low_complexity 1 35 0 1 1791 36 62 0 0 chr3 158076170 158076234 -1523549 + AT_rich Low_complexity Low_complexity 1 64 0 1 1791 423 132 0 0 chr3 158076971 158077039 -1522744 + (CA)n Simple_repeat Simple_repeat 2 69 0 1 1791 2950 92 7 21 chr3 158079058 158079489 -1520294 + L1_Mus2 LINE L1 6142 6566 0 1 1791 195 129 0 0 chr3 158079506 158079537 -1520246 + (A)n Simple_repeat Simple_repeat 1 31 0 1 1791 345 353 45 50 chr3 158080167 158080367 -1519416 - LTR16C LTR ERVL -13 476 278 1 1791 369 0 0 0 chr3 158081401 158081442 -1518341 + (TAA)n Simple_repeat Simple_repeat 2 42 0 1 1791 773 299 19 29 chr3 158081606 158081816 -1517967 + ID_B1 SINE B4 13 220 -4 1 1791 23 33 0 0 chr3 158082168 158082198 -1517585 + AT_rich Low_complexity Low_complexity 1 30 0 1 1791 1566 181 165 0 chr3 158082994 158083315 -1516468 + ORR1D1 LTR MaLR 1 374 0 1 1791 294 294 47 0 chr3 158083321 158083406 -1516377 + PB1D10 SINE Alu 25 113 -4 1 1791 278 308 47 19 chr3 158083557 158083663 -1516120 + RMER15 LTR ERVL 277 385 -190 1 1791 254 310 129 0 chr3 158083688 158083804 -1515979 + RMER15 LTR ERVL 444 574 -1 1 1791 291 206 65 0 chr3 158084454 158084561 -1515222 + (TCTA)n Simple_repeat Simple_repeat 1 114 0 1 1791 2423 54 0 62 chr3 158085083 158085437 -1514346 + L1Md_F2 LINE L1 6251 6582 0 1 1791 2680 59 3 22 chr3 158085918 158086283 -1513500 + L1Md_F2 LINE L1 6225 6582 0 1 1791 558 151 0 0 chr3 158086371 158086477 -1513306 + (TG)n Simple_repeat Simple_repeat 1 106 0 1 1791 1527 154 297 19 chr3 158086477 158086800 -1512983 + MTC LTR MaLR 1 413 -8 1 1791 252 217 101 34 chr3 158086836 158086955 -1512828 + Lx9 LINE L1 7490 7616 -28 1 1791 540 0 0 0 chr3 158087398 158087458 -1512325 + (GA)n Simple_repeat Simple_repeat 1 60 0 1 1791 278 293 173 0 chr3 158089069 158089202 -1510581 + RMER15 LTR ERVL 405 560 -15 1 1791 184 347 52 10 chr3 158089318 158089414 -1510369 - MIR SINE MIR -130 132 33 1 1791 292 368 148 40 chr3 158089699 158090320 -1509463 + LTR78 LTR ERV1 469 1156 -148 1 1791 8499 99 51 0 chr3 158090477 158092063 -1507720 + Lx3_Mus LINE L1 5310 6993 -16 1 1791 928 127 61 44 chr3 158092068 158092249 -1507534 - L1_Mus3 LINE L1 -8 6630 6447 1 1791 357 137 0 0 chr3 158092252 158092303 -1507480 + L1_Mus4 LINE L1 6226 6276 -360 1 1791 461 323 108 5 chr3 158094124 158094376 -1505407 + MLT2D LTR ERVL 1 281 -116 1 1791 318 311 104 0 chr3 158094351 158094457 -1505326 + MLT2D LTR ERVL 419 535 -24 1 1791 466 284 169 57 chr3 158095429 158095866 -1503917 - MLT2B1 LTR ERVL -28 492 7 1 1791 9277 45 0 0 chr3 158096271 158097432 -1502351 - L1_Mm LINE L1 -3009 2874 1714 1 1791 1188 29 0 0 chr3 158097434 158097573 -1502210 + L1Md_T LINE L1 5448 5586 -297 1 1791 8476 29 0 1 chr3 158097573 158098570 -1501213 + L1Md_T LINE L1 5587 6582 0 1 1791 21 36 0 0 chr3 158098946 158098974 -1500809 + AT_rich Low_complexity Low_complexity 1 28 0 1 1791 318 80 0 0 chr3 158098974 158099024 -1500759 + (TC)n Simple_repeat Simple_repeat 1 50 0 1 1791 441 0 0 0 chr3 158099024 158099073 -1500710 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 1791 541 301 33 33 chr3 158099094 158099245 -1500538 - B3A SINE B2 -47 151 1 1 1791 1160 227 83 18 chr3 158100033 158100370 -1499413 - RLTR10D LTR ERVK 0 359 1 1 1791 243 114 0 0 chr3 158100501 158100545 -1499238 + (T)n Simple_repeat Simple_repeat 1 44 0 1 1791 257 318 22 43 chr3 158101400 158101492 -1498291 - PB1D10 SINE Alu -1 116 27 1 1791 428 316 25 8 chr3 158101747 158101865 -1497918 + B1F SINE Alu 21 140 -9 1 1791 319 240 14 17 chr3 158101899 158101983 -1497800 + ID4 SINE ID 8 84 -68 1 1791 184 359 75 21 chr3 158102241 158102383 -1497400 - L2c LINE L2 -378 3009 2862 1 1791 4283 61 0 4 chr3 158102946 158103487 -1496296 - L1Md_F2 LINE L1 -14 6568 6030 1 1791 207 0 0 0 chr3 158103487 158103510 -1496273 + (CCCTAA)n Simple_repeat Simple_repeat 3 25 0 1 1791 652 49 0 0 chr3 158103510 158103591 -1496192 + L1Md_F2 LINE L1 5961 6041 -541 1 1791 541 290 131 57 chr3 158103598 158103934 -1495849 - MLT1A0 LTR MaLR 0 365 5 1 1791 302 228 42 42 chr3 158104124 158104220 -1495563 + MLT1E LTR MaLR 191 286 -367 1 1791 259 359 50 58 chr3 158104252 158104497 -1495286 + MLT1E LTR MaLR 328 672 -8 1 1791 37993 29 0 0 chr3 158104709 158111182 -1488601 - L1Md_T LINE L1 0 6585 14 1 1791 216 0 0 0 chr3 158111276 158111300 -1488483 + (T)n Simple_repeat Simple_repeat 1 24 0 1 1791 2863 56 5 3 chr3 158111670 158112047 -1487736 - MTA_Mm LTR MaLR 0 396 19 1 1791 2769 158 23 19 chr3 158112263 158112787 -1486996 + RLTR11A2 LTR ERVK 1 526 -1 1 1791 1199 29 23 6 chr3 158113244 158113416 -1486367 + (TCTA)n Simple_repeat Simple_repeat 3 177 0 1 1791 362 401 5 11 chr3 158113561 158113750 -1486033 - MER5A DNA MER1_type 0 189 2 1 1791 311 247 198 0 chr3 158113797 158113878 -1485905 + PB1D10 SINE Alu 21 117 0 1 1791 1015 86 17 28 chr3 158115392 158115572 -1484211 + (TTTC)n Simple_repeat Simple_repeat 3 180 0 1 1791 180 111 0 0 chr3 158115572 158115599 -1484184 + (TTC)n Simple_repeat Simple_repeat 2 28 0 1 1791 932 272 65 19 chr3 158115969 158116231 -1483552 + B4 SINE B4 1 274 -18 1 1791 342 0 0 0 chr3 158116260 158116298 -1483485 + (CA)n Simple_repeat Simple_repeat 2 39 0 1 1791 364 329 115 32 chr3 158116373 158116590 -1483193 + MLT1A LTR MaLR 68 302 -72 1 1791 220 185 18 18 chr3 158116784 158116839 -1482944 + (TTA)n Simple_repeat Simple_repeat 3 57 0 1 1791 3880 120 14 5 chr3 158117030 158117623 -1482160 + Lx LINE L1 6050 6647 -7 1 1791 21 0 0 0 chr3 158117630 158117651 -1482132 + AT_rich Low_complexity Low_complexity 1 21 0 1 1791 258 320 27 0 chr3 158118152 158118231 -1481552 - ID4_ SINE ID -70 82 2 1 1791 6062 51 5 0 chr3 158118251 158119010 -1480773 - L1Md_F2 LINE L1 -13 6569 5807 1 1791 477 300 81 39 chr3 158119698 158119875 -1479908 + L1_Rod LINE L1 5363 5543 -337 1 1791 360 0 0 0 chr3 158119875 158119915 -1479868 + (TG)n Simple_repeat Simple_repeat 2 41 0 1 1791 477 293 90 44 chr3 158119915 158120089 -1479694 + L1_Rod LINE L1 5517 5703 -144 1 1791 2887 39 6 0 chr3 158121668 158122023 -1477760 - L1Md_F2 LINE L1 -2 6580 6224 1 1791 257 232 132 92 chr3 158122076 158122228 -1477555 + MER3 DNA MER1_type 27 184 -25 1 1791 1860 241 14 48 chr3 158122301 158122719 -1477064 - MTD LTR MaLR -14 405 2 1 1791 354 284 41 47 chr3 158122780 158122794 -1476989 - CYRA11_Mm Unknown Y-chromosome -295 322 254 1 1791 846 158 0 0 chr3 158122794 158122933 -1476850 + URR1B DNA MER1_type 86 224 -1 1 1791 354 284 41 47 chr3 158122933 158122950 -1476833 - CYRA11_Mm Unknown Y-chromosome -295 253 154 1 1791 25 0 0 0 chr3 158123695 158123720 -1476063 + AT_rich Low_complexity Low_complexity 1 25 0 1 1791 363 329 178 0 chr3 158123787 158124018 -1475765 - B4A SINE B4 -19 273 2 1 1791 180 111 0 0 chr3 158124759 158124786 -1474997 + (TGAA)n Simple_repeat Simple_repeat 1 27 0 1 1791 1045 89 64 18 chr3 158125622 158125793 -1473990 + L1Md_F2 LINE L1 6404 6582 0 1 1791 644 288 91 0 chr3 158126883 158127081 -1472702 - B3 SINE B2 0 216 1 1 1791 24 0 0 0 chr3 158127130 158127154 -1472629 + AT_rich Low_complexity Low_complexity 1 24 0 1 1791 452 135 0 92 chr3 158127414 158127512 -1472271 - Lx LINE L1 -4 6650 6562 1 1791 477 35 0 0 chr3 158127514 158127571 -1472212 - L1_Mus4 LINE L1 -730 5906 5850 1 1791 229 313 59 29 chr3 158130097 158130199 -1469584 + MLT1A LTR MaLR 7 111 -263 1 1791 313 309 154 39 chr3 158131414 158131745 -1468038 + MLT1B LTR MaLR 10 382 -8 1 1791 7568 28 12 1 chr3 158131768 158132665 -1467118 + L1Md_F3 LINE L1 5677 6583 -1 1 1791 582 157 0 0 chr3 158133079 158133181 -1466602 + (TA)n Simple_repeat Simple_repeat 2 103 0 1 1791 5811 75 14 24 chr3 158133391 158134199 -1465584 - L1_Mus2 LINE L1 -2 6564 5765 1 1791 459 52 0 0 chr3 158134199 158134257 -1465526 + Lx2 LINE L1 5711 5768 -1229 1 1791 1888 191 47 6 chr3 158134615 158134974 -1464809 - ORR1C1 LTR MaLR 0 378 5 1 1791 192 383 4 50 chr3 158135554 158135645 -1464138 - MIR SINE MIR -184 92 3 1 1791 208 135 0 0 chr3 158135704 158135741 -1464042 + (CAAAA)n Simple_repeat Simple_repeat 2 38 0 1 1791 477 261 25 6 chr3 158136015 158136177 -1463606 + L1MA6 LINE L1 5319 5483 -817 1 1791 408 331 22 15 chr3 158136438 158136573 -1463210 + RSINE1 SINE B4 6 141 -24 1 1791 683 306 82 48 chr3 158136636 158137154 -1462629 + L1MA6 LINE L1 5524 6076 -224 1 1791 321 135 0 0 chr3 158137250 158137302 -1462481 + (TA)n Simple_repeat Simple_repeat 1 52 0 1 1791 2298 165 23 15 chr3 158138569 158138962 -1460821 - MTB_Mm LTR MaLR -11 396 1 1 1791 774 206 123 31 chr3 158139558 158139753 -1460030 + B3 SINE B2 3 215 -1 1 1791 1199 115 5 5 chr3 158140458 158140642 -1459141 - B2_Mm2 SINE B2 -9 186 3 1 1791 4319 140 35 28 chr3 158142183 158142933 -1456850 + Lx3B LINE L1 6215 6969 -4 1 1791 21 36 0 0 chr3 158142942 158142970 -1456813 + AT_rich Low_complexity Low_complexity 1 28 0 1 1791 802 242 63 15 chr3 158143650 158143855 -1455928 - B3 SINE B2 0 216 2 1 1791 201 103 51 0 chr3 158145262 158145301 -1454482 + (CAA)n Simple_repeat Simple_repeat 2 42 0 1 1791 188 67 33 0 chr3 158147067 158147097 -1452686 + (TTTTG)n Simple_repeat Simple_repeat 5 35 0 1 1791 928 231 102 0 chr3 158147123 158147339 -1452444 + MTD LTR MaLR 180 417 -2 1 1791 240 287 60 18 chr3 158147346 158147513 -1452270 - L1M5 LINE L1 -2254 3892 3719 1 1791 7859 54 10 5 chr3 158147553 158149161 -1450622 - L1Md_F2 LINE L1 0 6582 4969 1 1791 432 0 0 0 chr3 158149287 158149335 -1450448 + (CATA)n Simple_repeat Simple_repeat 1 48 0 2 1791 302 313 20 20 chr3 158150005 158150106 -1449677 - MLT1A LTR MaLR -255 119 19 2 1791 279 79 0 0 chr3 158151916 158151954 -1447829 + (T)n Simple_repeat Simple_repeat 1 38 0 2 1791 227 177 10 23 chr3 158152233 158152289 -1447494 + PB1 SINE Alu 60 124 -3 2 1791 1833 230 22 15 chr3 158152555 158152957 -1446826 + Lx9 LINE L1 6599 7003 -641 2 1791 423 0 0 0 chr3 158152957 158153004 -1446779 + (CA)n Simple_repeat Simple_repeat 2 48 0 2 1791 468 0 0 0 chr3 158153004 158153055 -1446728 + (TA)n Simple_repeat Simple_repeat 2 53 0 2 1791 395 171 18 18 chr3 158153072 158153185 -1446598 + Lx9 LINE L1 7532 7644 0 2 1791 243 0 0 0 chr3 158153252 158153279 -1446504 + (TTTTA)n Simple_repeat Simple_repeat 4 30 0 2 1791 50 83 0 0 chr3 158153351 158153471 -1446312 + AT_rich Low_complexity Low_complexity 1 120 0 2 1791 430 295 40 24 chr3 158154123 158154423 -1445360 + L1M5 LINE L1 3612 3916 -2230 2 1791 381 250 18 53 chr3 158154500 158154614 -1445169 - MTEb LTR MaLR 0 379 270 2 1791 421 254 22 44 chr3 158154630 158154766 -1445017 + Lx6 LINE L1 7284 7416 -44 2 1791 2806 72 25 5 chr3 158155993 158156385 -1443398 + MTB LTR MaLR 1 400 0 2 1791 1509 185 73 6 chr3 158156680 158156995 -1442788 + Lx4B LINE L1 6719 7054 -4 2 1791 453 36 0 0 chr3 158157030 158157085 -1442698 + (TG)n Simple_repeat Simple_repeat 1 55 0 2 1791 33 25 0 0 chr3 158158204 158158244 -1441539 + AT_rich Low_complexity Low_complexity 1 40 0 2 1791 222 37 0 0 chr3 158158595 158158622 -1441161 + (T)n Simple_repeat Simple_repeat 1 27 0 2 1791 1225 41 0 0 chr3 158158622 158158769 -1441014 - B1_Mm SINE Alu 0 147 1 2 1791 330 261 65 36 chr3 158158885 158159024 -1440759 - MTEa LTR MaLR -6 373 231 2 1791 396 104 0 0 chr3 158159094 158159161 -1440622 + (T)n Simple_repeat Simple_repeat 1 67 0 2 1791 323 324 14 0 chr3 158160253 158160327 -1439456 + ID_B1 SINE B4 85 159 -65 2 1791 312 311 103 9 chr3 158160327 158160357 -1439426 + PB1D10 SINE Alu 4 117 0 2 1791 1747 275 92 20 chr3 158160363 158161328 -1438455 - L1MC1 LINE L1 -230 6103 5061 2 1791 27 0 0 0 chr3 158161773 158161800 -1437983 + AT_rich Low_complexity Low_complexity 1 27 0 2 1791 365 200 44 11 chr3 158161820 158161911 -1437872 - Lx4A LINE L1 -49 7009 6916 2 1791 1083 279 17 103 chr3 158163865 158164272 -1435511 + MTE2a LTR MaLR 8 379 0 2 1791 217 376 53 11 chr3 158165081 158165175 -1434608 + B1F1 SINE Alu 1 98 -51 2 1791 871 143 118 0 chr3 158165487 158165648 -1434135 - URR1B DNA MER1_type 0 225 46 2 1791 391 233 163 34 chr3 158165648 158165688 -1434095 + CYRA11_Mm Unknown Y-chromosome 198 399 -218 2 1791 491 297 95 18 chr3 158165762 158165930 -1433853 - B4 SINE B4 -107 185 5 2 1791 352 244 102 106 chr3 158165932 158166207 -1433576 - Charlie1a DNA MER1_type -61 1394 1121 2 1791 300 245 143 0 chr3 158166248 158166346 -1433437 - PB1D7 SINE Alu -8 112 1 2 1791 230 306 39 104 chr3 158166429 158166659 -1433124 - Charlie1a DNA MER1_type -548 907 693 2 1791 3494 72 2 35 chr3 158166694 158167185 -1432598 + L1Md_F2 LINE L1 6094 6568 -14 2 1791 339 234 24 0 chr3 158167720 158167844 -1431939 + CT-rich Low_complexity Low_complexity 3 129 0 2 1791 468 330 15 15 chr3 158168173 158168376 -1431407 - B3 SINE B2 -11 205 3 2 1791 572 291 78 12 chr3 158168403 158168647 -1431136 - L1MA4 LINE L1 -364 5936 5677 2 1791 355 79 63 0 chr3 158168988 158169051 -1430732 + L1Md_F2 LINE L1 6516 6582 0 2 1791 1020 110 0 20 chr3 158169123 158169260 -1430523 + B1_Mus1 SINE Alu 3 139 -9 2 1791 549 72 0 0 chr3 158169260 158169343 -1430440 + (CAAAC)n Simple_repeat Simple_repeat 2 84 0 2 1791 318 26 0 0 chr3 158169343 158169382 -1430401 + (CCAA)n Simple_repeat Simple_repeat 2 40 0 2 1791 539 328 117 50 chr3 158169667 158170104 -1429679 + MLT1A0-int LTR MaLR 600 1065 -322 2 1791 581 349 54 43 chr3 158171597 158171873 -1427910 + MLT1A0 LTR MaLR 77 355 -10 2 1791 186 250 161 0 chr3 158172005 158172061 -1427722 + MIRc SINE MIR 39 103 -165 2 1791 1530 256 42 29 chr3 158172174 158172570 -1427213 - MTD LTR MaLR -44 375 1 2 1791 7647 64 18 1 chr3 158172640 158174216 -1425567 - L1Md_F2 LINE L1 -1 6581 4976 2 1791 4299 68 7 0 chr3 158174205 158174763 -1425020 + L1Md_F2 LINE L1 4425 4986 -897 2 1791 1120 78 0 0 chr3 158174840 158174982 -1424801 - B1_Mus1 SINE Alu -5 143 2 2 1791 602 237 30 0 chr3 158175124 158175259 -1424524 - B1_Mur1 SINE Alu -10 139 1 2 1791 546 292 44 63 chr3 158175633 158175903 -1423880 - MER82 DNA MER2_type -197 456 192 2 1791 370 354 129 12 chr3 158175904 158176067 -1423716 + B3 SINE B2 1 182 -34 2 1791 363 202 0 0 chr3 158176067 158176151 -1423632 + (TA)n Simple_repeat Simple_repeat 1 84 0 2 1791 23 33 0 0 chr3 158176177 158176207 -1423576 + AT_rich Low_complexity Low_complexity 1 30 0 2 1791 577 159 31 8 chr3 158176570 158176697 -1423086 + BC1_Mm scRNA scRNA 1 130 -22 2 1791 243 88 0 0 chr3 158176697 158176731 -1423052 + (GAAAA)n Simple_repeat Simple_repeat 2 35 0 2 1791 4678 111 16 0 chr3 158176816 158177492 -1422291 - L1_Mm LINE L1 -737 5146 4460 2 1791 432 0 0 0 chr3 158177766 158177814 -1421969 + (CA)n Simple_repeat Simple_repeat 2 49 0 2 1791 7349 67 43 10 chr3 158178007 158178747 -1421036 - L1_Mus3 LINE L1 -4 6634 5860 2 1791 234 0 0 0 chr3 158178747 158178773 -1421010 + (TG)n Simple_repeat Simple_repeat 1 26 0 2 1791 7349 106 15 7 chr3 158178773 158179628 -1420155 - L1_Mus3 LINE L1 -779 5859 5008 2 1791 231 88 0 0 chr3 158180070 158180104 -1419679 + (TTTTTA)n Simple_repeat Simple_repeat 3 36 0 2 1791 1257 217 88 37 chr3 158180130 158180484 -1419299 + MT2A LTR ERVL 27 541 -60 2 1791 1491 115 24 12 chr3 158180465 158180711 -1419072 + RMER12 LTR ERVK 467 715 -607 2 1791 228 188 0 0 chr3 158180909 158180957 -1418826 + Lx8 LINE L1 7421 7468 -5 2 1791 820 273 24 0 chr3 158181941 158182146 -1417637 - B3 SINE B2 -5 211 2 2 1791 251 305 113 31 chr3 158183733 158183892 -1415891 + MLT1C LTR MaLR 65 236 -231 2 1791 407 386 35 35 chr3 158183915 158184170 -1415613 + MLT1C LTR MaLR 213 467 0 2 1791 264 243 164 0 chr3 158184233 158184410 -1415373 + L1MC3 LINE L1 7573 7778 -7 2 1791 211 28 0 53 chr3 158184854 158184892 -1414891 + (TTTTTG)n Simple_repeat Simple_repeat 5 40 0 2 1791 1155 68 7 0 chr3 158184892 158185038 -1414745 - B1_Mus2 SINE Alu 0 147 1 2 1791 300 372 71 5 chr3 158185822 158186006 -1413777 + MLT2D LTR ERVL 1 196 -218 2 1791 750 305 10 24 chr3 158186015 158186223 -1413560 + B3 SINE B2 1 205 -11 2 1791 191 361 0 0 chr3 158187591 158187652 -1412131 - MIRm SINE MIR -3 273 213 2 1791 3514 183 62 1 chr3 158187704 158188465 -1411318 + Lx5 LINE L1 6131 7050 0 2 1791 28 0 0 0 chr3 158188474 158188502 -1411281 + AT_rich Low_complexity Low_complexity 1 28 0 2 1791 1383 248 37 12 chr3 158188795 158189118 -1410665 - MTC LTR MaLR -8 413 83 2 1791 1617 265 2 23 chr3 158189168 158189566 -1410217 - Lx6 LINE L1 -27 7433 7044 2 1791 29 28 0 0 chr3 158190427 158190463 -1409320 + AT_rich Low_complexity Low_complexity 1 36 0 2 1791 1911 198 24 3 chr3 158190745 158191085 -1408698 - Lx5 LINE L1 -15 7035 6689 2 1791 1553 178 4 4 chr3 158191370 158191635 -1408148 - RMER19A LTR ERVK 0 737 473 2 1791 1312 72 5 89 chr3 158191642 158191855 -1407928 + L1_Mus2 LINE L1 6372 6566 0 2 1791 410 204 142 28 chr3 158192177 158192283 -1407500 - RMER19A LTR ERVK -312 425 308 2 1791 3638 199 56 138 chr3 158192280 158192728 -1407055 - ORR1B1-int LTR MaLR -181 1328 935 2 1791 1548 22 0 0 chr3 158192728 158192913 -1406870 - L1Md_A LINE L1 0 6582 6398 2 1791 3638 199 56 138 chr3 158192913 158193600 -1406183 - ORR1B1-int LTR MaLR -575 934 288 2 1791 900 298 72 8 chr3 158193944 158194181 -1405602 - B4A SINE B4 -11 281 30 2 1791 414 0 0 0 chr3 158194265 158194311 -1405472 + (TG)n Simple_repeat Simple_repeat 1 46 0 2 1791 259 358 0 15 chr3 158194315 158194383 -1405400 - ID4_ SINE ID -14 69 3 2 1791 464 330 49 9 chr3 158194787 158195013 -1404770 + Lx9 LINE L1 7253 7487 -157 2 1791 26 30 0 0 chr3 158195139 158195172 -1404611 + AT_rich Low_complexity Low_complexity 1 33 0 2 1791 758 88 44 0 chr3 158195230 158195366 -1404417 + L1_Mus3 LINE L1 6497 6638 0 2 1791 687 301 59 0 chr3 158196410 158196613 -1403170 + ID_B1 SINE B4 2 216 -8 2 1791 407 19 19 0 chr3 158196700 158196752 -1403031 + (CA)n Simple_repeat Simple_repeat 2 54 0 2 1791 432 0 0 0 chr3 158196752 158196799 -1402984 + (GA)n Simple_repeat Simple_repeat 2 49 0 2 1791 25 0 0 0 chr3 158197404 158197429 -1402354 + AT_rich Low_complexity Low_complexity 1 25 0 2 1791 2976 58 43 0 chr3 158197456 158197850 -1401933 - L1Md_F2 LINE L1 0 6582 6172 2 1791 324 366 83 25 chr3 158198207 158198448 -1401335 + ORR1E LTR MaLR 85 339 -20 2 1791 3169 61 5 0 chr3 158199929 158200323 -1399460 + MTA_Mm LTR MaLR 1 396 0 2 1791 2190 143 37 69 chr3 158200777 158201182 -1398601 + ORR1B1 LTR MaLR 1 392 -2 2 1791 8209 170 54 86 chr3 158201188 158203253 -1396530 + ORR1B1-int LTR MaLR 3 1905 -58 2 1791 2298 167 13 10 chr3 158203253 158203646 -1396137 + ORR1B1 LTR MaLR 1 394 0 2 1792 3658 83 32 12 chr3 158204111 158204671 -1395112 - MusHAL1 LINE L1 -1443 1269 699 2 1792 34 84 0 0 chr3 158205032 158205115 -1394668 + AT_rich Low_complexity Low_complexity 1 83 0 2 1792 502 91 0 43 chr3 158205915 158206007 -1393776 + (GGGAGA)n Simple_repeat Simple_repeat 4 91 0 2 1792 226 321 12 12 chr3 158206874 158206956 -1392827 - ID4 SINE ID 0 83 2 2 1792 2886 249 96 19 chr3 158206969 158207843 -1391940 - Lx8 LINE L1 -4 7469 6529 2 1792 508 29 29 0 chr3 158208165 158208235 -1391548 + (TA)n Simple_repeat Simple_repeat 2 73 0 2 1792 261 253 92 46 chr3 158208422 158208509 -1391274 - RLTR41 LTR ERV1 -343 103 13 2 1792 545 297 108 14 chr3 158209523 158209735 -1390048 + RMER15 LTR ERVL 302 533 -42 2 1792 1708 172 121 30 chr3 158210614 158210985 -1388798 - MTB_Mm LTR MaLR -2 405 1 3 1792 434 191 42 125 chr3 158210988 158211156 -1388627 - MTB_Mm-int LTR MaLR -3 1095 942 3 1792 2720 167 19 8 chr3 158211149 158211633 -1388150 - MTB_Mm-int LTR MaLR -512 746 258 3 1792 213 39 0 0 chr3 158211732 158211758 -1388025 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 3 1792 236 221 28 42 chr3 158213032 158213103 -1386680 - MLT1J1 LTR MaLR -335 109 40 3 1792 260 259 92 100 chr3 158214711 158214831 -1384952 - PB1D7 SINE Alu 0 120 2 3 1792 339 113 0 0 chr3 158215438 158215500 -1384283 + (TC)n Simple_repeat Simple_repeat 1 62 0 3 1792 186 43 0 0 chr3 158215500 158215523 -1384260 + (TG)n Simple_repeat Simple_repeat 2 24 0 3 1792 908 291 20 57 chr3 158215540 158215839 -1383944 - B4A SINE B4 -4 288 1 3 1792 23 97 0 0 chr3 158216325 158216397 -1383386 + AT_rich Low_complexity Low_complexity 1 72 0 3 1792 22 35 0 0 chr3 158216618 158216647 -1383136 + AT_rich Low_complexity Low_complexity 1 29 0 3 1792 242 343 104 0 chr3 158216898 158217071 -1382712 + MIRc SINE MIR 8 205 -3 3 1792 1143 203 130 138 chr3 158219581 158219753 -1380030 + ORR1C1 LTR MaLR 5 145 -233 3 1792 1458 108 11 69 chr3 158219753 158220030 -1379753 - L1_Mus4 LINE L1 -1 6635 6375 3 1792 1143 203 130 138 chr3 158220030 158220234 -1379549 + ORR1C1 LTR MaLR 146 378 0 3 1792 622 262 72 20 chr3 158220389 158220638 -1379145 + L1MC1 LINE L1 5916 6177 -156 3 1792 234 0 0 0 chr3 158223710 158223736 -1376047 + (TG)n Simple_repeat Simple_repeat 2 27 0 3 1792 180 152 0 0 chr3 158224355 158224388 -1375395 + (CGG)n Simple_repeat Simple_repeat 3 35 0 3 1792 6791 76 10 38 chr3 158227376 158228511 -1371272 - L1_Mus2 LINE L1 0 6566 5458 3 1792 26 30 0 0 chr3 158228846 158228879 -1370904 + AT_rich Low_complexity Low_complexity 1 33 0 3 1792 293 297 96 20 chr3 158229662 158229966 -1369817 + L1M2c LINE L1 2110 2501 -4024 3 1792 397 325 56 29 chr3 158230075 158230519 -1369264 + L1M2c LINE L1 2770 3225 -3560 3 1792 294 320 22 6 chr3 158230578 158230757 -1369026 + L1M2c LINE L1 3333 3514 -3271 3 1792 1210 227 131 11 chr3 158230761 158231135 -1368648 - MTD LTR MaLR 0 419 1 3 1792 1559 202 84 77 chr3 158231200 158231618 -1368165 + MTC LTR MaLR 1 421 0 3 1792 861 171 6 6 chr3 158231618 158231777 -1368006 + MTC-int LTR MaLR 3 161 -1097 3 1792 1077 75 0 39 chr3 158231781 158231934 -1367849 + B1_Mm SINE Alu 1 147 0 3 1792 227 196 0 0 chr3 158231934 158231985 -1367798 + A-rich Low_complexity Low_complexity 1 51 0 3 1792 1682 158 62 19 chr3 158232057 158232379 -1367404 - Lx4A LINE L1 -9 7049 6714 3 1792 1179 137 17 84 chr3 158232384 158232623 -1367160 - Lx4A LINE L1 -524 6534 6312 3 1792 725 207 20 7 chr3 158232624 158232770 -1367013 + MTC-int LTR MaLR 247 394 -864 3 1792 3864 133 38 13 chr3 158232770 158233515 -1366268 - Lx5 LINE L1 -938 4939 4177 3 1792 2782 143 21 34 chr3 158233524 158233996 -1365787 + Lx5 LINE L1 4974 5440 -437 3 1792 3270 142 68 58 chr3 158233996 158234601 -1365182 - RMER19C LTR ERVK 0 611 1 3 1792 2782 143 21 34 chr3 158234601 158234694 -1365089 + Lx5 LINE L1 5441 5532 -345 3 1792 2584 34 3 0 chr3 158234694 158235018 -1364765 + L1Md_T LINE L1 6258 6582 0 3 1792 7620 155 34 4 chr3 158235020 158236473 -1363310 + Lx5 LINE L1 5535 7047 -3 3 1792 5122 45 0 0 chr3 158236487 158237136 -1362647 + L1Md_F2 LINE L1 4938 5586 -297 3 1792 8278 45 0 0 chr3 158237136 158238132 -1361651 + L1Md_F2 LINE L1 5587 6582 0 3 1792 3578 179 52 12 chr3 158238143 158238817 -1360966 + MTC-int LTR MaLR 380 1080 -178 3 1792 985 87 0 13 chr3 158238817 158238969 -1360814 + (TTC)n Simple_repeat Simple_repeat 1 150 0 3 1792 1947 127 36 7 chr3 158238969 158239277 -1360506 - Lx3C LINE L1 -6 6970 6654 3 1792 2424 77 18 3 chr3 158239278 158239617 -1360166 + Lx3C LINE L1 6289 6632 -344 3 1792 896 171 32 0 chr3 158239617 158239804 -1359979 + MTC-int LTR MaLR 1066 1258 0 3 1792 1666 180 174 30 chr3 158239804 158240165 -1359618 + MTC LTR MaLR 1 413 -8 3 1792 851 325 68 19 chr3 158240165 158241016 -1358767 + L1M2 LINE L1 2932 3824 -2319 3 1792 1790 213 18 49 chr3 158241016 158241406 -1358377 - ORR1C2 LTR MaLR -6 378 1 3 1792 306 279 84 15 chr3 158241409 158241540 -1358243 + L1_Rod LINE L1 3801 3940 -1907 3 1792 28 29 0 0 chr3 158241564 158241599 -1358184 + AT_rich Low_complexity Low_complexity 1 35 0 3 1792 942 235 14 0 chr3 158242417 158242634 -1357149 - L1_Mur3 LINE L1 -234 5646 5427 3 1792 923 26 9 0 chr3 158242646 158242760 -1357023 + (TCTA)n Simple_repeat Simple_repeat 4 118 0 3 1792 725 254 160 23 chr3 158244175 158244377 -1355406 + Lx8 LINE L1 7120 7331 -142 3 1792 225 0 0 0 chr3 158244377 158244402 -1355381 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 3 1792 725 254 160 23 chr3 158244402 158244505 -1355278 + Lx8 LINE L1 7332 7467 -6 3 1792 197 304 141 27 chr3 158245355 158245451 -1354332 + L2a LINE L2 3181 3290 -136 3 1792 1415 98 14 0 chr3 158245451 158245666 -1354117 - L1_Mus3 LINE L1 -2 6636 6419 3 1792 197 304 141 27 chr3 158245666 158245789 -1353994 + L2a LINE L2 3291 3424 -2 3 1792 671 165 64 50 chr3 158245793 158245933 -1353850 + B1_Mur4 SINE Alu 1 142 -8 3 1792 423 0 0 0 chr3 158245937 158245984 -1353799 + (TAAA)n Simple_repeat Simple_repeat 4 50 0 3 1792 296 250 134 0 chr3 158247265 158247377 -1352406 + Lx9 LINE L1 7073 7199 -445 3 1792 6389 138 6 20 chr3 158247562 158249453 -1350330 - Lx LINE L1 -1 6653 4783 3 1792 5880 143 33 25 chr3 158249456 158250458 -1349325 + L1_Mur2 LINE L1 3621 4634 -1243 3 1792 315 0 0 0 chr3 158250458 158250493 -1349290 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 3 1792 5880 143 33 25 chr3 158250493 158250635 -1349148 + L1_Mur2 LINE L1 4635 4774 -1103 3 1792 328 323 0 21 chr3 158250666 158250761 -1349022 + MTEa LTR MaLR 6 98 -281 3 1792 509 80 0 0 chr3 158250822 158250897 -1348886 - L1_Mus2 LINE L1 0 6566 6492 3 1792 513 110 0 0 chr3 158250963 158251054 -1348729 + (TG)n Simple_repeat Simple_repeat 2 92 0 3 1792 439 178 0 109 chr3 158251054 158251147 -1348636 + MTEa LTR MaLR 207 290 -89 3 1792 25 65 0 0 chr3 158252898 158252944 -1346839 + AT_rich Low_complexity Low_complexity 1 46 0 3 1792 208 247 12 61 chr3 158253065 158253147 -1346636 + (TATATG)n Simple_repeat Simple_repeat 3 80 0 3 1792 312 296 124 36 chr3 158254179 158254316 -1345467 + LTR48 LTR ERV1 1 149 -638 3 1792 1918 61 21 7 chr3 158254767 158255046 -1344737 - BGLII LTR ERVK 0 421 139 3 1792 68 34 0 0 chr3 158255306 158255395 -1344388 + AT_rich Low_complexity Low_complexity 1 89 0 3 1792 2604 88 29 11 chr3 158255799 158256176 -1343607 + Lx2 LINE L1 6614 6997 0 3 1792 224 332 132 46 chr3 158256213 158256538 -1343245 + L2 LINE L2 2618 2970 -449 3 1792 6238 177 57 13 chr3 158256709 158258024 -1341759 - Lx2B LINE L1 -18 6982 5610 3 1792 1740 154 10 0 chr3 158258024 158258330 -1341453 - Lx2B LINE L1 -814 5063 4755 3 1792 27745 82 2 24 chr3 158259272 158260062 -1339721 - L1_Mus2 LINE L1 0 6566 5785 3 1792 186 43 0 0 chr3 158260062 158260085 -1339698 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 3 1792 969 109 0 21 chr3 158260085 158260226 -1339557 - B1_Mus1 SINE Alu -9 139 2 3 1792 27745 112 6 39 chr3 158260226 158264808 -1334975 - L1_Mus2 LINE L1 -99 5784 1353 3 1792 1518 104 0 29 chr3 158264808 158265046 -1334737 - L1Md_F2 LINE L1 0 6582 6352 3 1792 27745 194 58 113 chr3 158265046 158266238 -1333545 - L1_Mus2 LINE L1 -4531 1352 218 3 1792 27 49 0 0 chr3 158267033 158267074 -1332709 + AT_rich Low_complexity Low_complexity 1 41 0 3 1792 629 321 142 39 chr3 158267232 158267569 -1332214 - MER21B LTR ERV1 -171 692 321 3 1792 222 128 0 0 chr3 158267665 158267704 -1332079 + (TTTTTA)n Simple_repeat Simple_repeat 3 41 0 3 1792 251 347 42 0 chr3 158267776 158267848 -1331935 - MER21B LTR ERV1 -777 86 12 3 1792 274 281 53 83 chr3 158267886 158268018 -1331765 + MER2B DNA MER2_type 38 165 -171 3 1792 525 206 31 16 chr3 158268088 158268216 -1331567 + MER2 DNA MER2_type 87 216 -129 3 1792 183 42 0 0 chr3 158269006 158269030 -1330753 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 3 1792 446 328 271 8 chr3 158269731 158269958 -1329825 - B4A SINE B4 0 292 6 3 1792 23 54 0 0 chr3 158270889 158270926 -1328857 + AT_rich Low_complexity Low_complexity 1 37 0 3 1792 2920 70 3 0 chr3 158271654 158272027 -1327756 + L1_Mus1 LINE L1 6194 6567 0 3 1792 1358 63 0 17 chr3 158272777 158272955 -1326828 + B2_Mm2 SINE B2 2 176 -19 3 1792 651 302 14 47 chr3 158272986 158273198 -1326585 - ORR1E LTR MaLR -135 224 20 3 1792 235 170 113 0 chr3 158273167 158273220 -1326563 - ORR1E-int LTR MaLR -25 1767 1709 3 1792 531 0 0 0 chr3 158273363 158273422 -1326361 + (TC)n Simple_repeat Simple_repeat 1 59 0 3 1792 599 329 15 0 chr3 158273430 158273567 -1326216 - RSINE1 SINE B4 -21 144 6 3 1792 204 309 0 0 chr3 158274007 158274075 -1325708 + (TA)n Simple_repeat Simple_repeat 2 69 0 3 1792 206 114 74 58 chr3 158274160 158274260 -1325523 + (TCTA)n Simple_repeat Simple_repeat 1 100 0 3 1792 273 128 0 0 chr3 158274260 158274307 -1325476 + (TATG)n Simple_repeat Simple_repeat 2 48 0 3 1792 206 114 74 58 chr3 158274307 158274327 -1325456 + (TCTA)n Simple_repeat Simple_repeat 3 24 0 3 1792 3150 197 96 4 chr3 158274717 158274817 -1324966 - RMER1A Other Other 0 1030 931 3 1792 234 0 0 0 chr3 158274817 158274843 -1324940 + (CCA)n Simple_repeat Simple_repeat 1 26 0 3 1792 3150 238 95 4 chr3 158274843 158275699 -1324084 - RMER1A Other Other -100 930 112 3 1792 565 306 0 70 chr3 158275735 158275935 -1323848 - RMER1A Other Other -796 234 49 3 1792 195 69 0 0 chr3 158276148 158276177 -1323606 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 3 1792 313 375 43 18 chr3 158277422 158277702 -1322081 - L1MEg LINE L1 -805 5341 5055 3 1792 503 351 113 18 chr3 158278354 158278795 -1320988 - L1MEg LINE L1 -3406 2740 2258 3 1792 1452 294 109 28 chr3 158278828 158279111 -1320672 - Lx8 LINE L1 -3 7470 7136 3 1792 800 182 253 0 chr3 158279111 158279281 -1320502 - B3 SINE B2 -1 215 3 3 1792 1452 296 98 29 chr3 158279281 158279654 -1320129 - Lx8 LINE L1 -338 7135 6760 3 1792 347 309 116 47 chr3 158279738 158280013 -1319770 - L1MEg LINE L1 -4162 2080 1787 3 1792 231 192 39 0 chr3 158281224 158281276 -1318507 - L1MEg LINE L1 -4799 1443 1390 3 1792 3714 132 11 28 chr3 158281706 158282554 -1317229 + L1Md_F2 LINE L1 632 1462 -4421 3 1792 16652 70 5 5 chr3 158282537 158284747 -1315036 + L1Md_F2 LINE L1 3376 5585 -298 3 1792 7632 71 1 1 chr3 158284748 158285741 -1314042 + L1Md_F2 LINE L1 5587 6579 -3 3 1792 23 0 0 0 chr3 158287640 158287663 -1312120 + AT_rich Low_complexity Low_complexity 1 23 0 3 1792 928 270 42 33 chr3 158287827 158288157 -1311626 - RLTR22_Mur LTR ERVK -1512 336 4 3 1792 300 314 9 26 chr3 158288167 158288300 -1311483 - MIR SINE MIR 0 268 138 3 1792 1302 56 0 6 chr3 158288670 158288832 -1310951 + L1_Mm LINE L1 5407 5567 -316 3 1792 7395 69 9 3 chr3 158289303 158290876 -1308907 - L1Md_F2 LINE L1 0 6582 4996 3 1792 2062 106 3 70 chr3 158290876 158291232 -1308551 + IAPLTR1a_Mm LTR ERVK 1 332 -5 3 1792 57480 12 4 7 chr3 158291244 158297712 -1302071 + IAPEz-int LTR ERVK 35 6481 0 3 1792 2073 108 3 70 chr3 158297712 158298071 -1301712 + IAPLTR1a_Mm LTR ERVK 1 335 -2 3 1792 26474 113 17 11 chr3 158298071 158302835 -1296948 - L1Md_F2 LINE L1 -883 5000 203 3 1792 22 35 0 0 chr3 158303421 158303450 -1296333 + AT_rich Low_complexity Low_complexity 1 29 0 3 1792 827 267 21 0 chr3 158304477 158304664 -1295119 + ORR1E LTR MaLR 3 193 -166 3 1792 1069 103 6 49 chr3 158304672 158304836 -1294947 + L1_Mm LINE L1 5484 5640 -243 3 1792 889 92 7 14 chr3 158304836 158304979 -1294804 + (TTTC)n Simple_repeat Simple_repeat 2 143 0 3 1792 1108 50 7 7 chr3 158304981 158305122 -1294661 - B1_Mm SINE Alu -6 141 1 3 1792 22 56 0 0 chr3 158305823 158305859 -1293924 + AT_rich Low_complexity Low_complexity 1 36 0 3 1792 28 29 0 0 chr3 158306369 158306404 -1293379 + AT_rich Low_complexity Low_complexity 1 35 0 3 1792 3008 216 94 77 chr3 158307034 158307897 -1291886 + Lx7 LINE L1 6819 7696 0 3 1792 324 324 80 33 chr3 158307928 158308045 -1291738 + B4 SINE B4 1 216 -8 4 1792 421 244 0 0 chr3 158308045 158308127 -1291656 + B1_Mur1 SINE Alu 60 141 -8 4 1792 313 222 14 22 chr3 158308420 158308558 -1291225 + (CATATA)n Simple_repeat Simple_repeat 3 139 0 4 1792 373 93 19 0 chr3 158308558 158308612 -1291171 + HAL1-3A_ME LINE L1 1976 2030 -828 4 1792 1406 285 101 11 chr3 158309940 158310405 -1289378 - RMER20A LTR ERVK 0 516 10 4 1792 650 271 63 40 chr3 158310414 158310637 -1289146 - MERVK26-int LTR ERVK -1 6918 6691 4 1792 471 141 0 100 chr3 158311979 158312089 -1287694 - L1Md_F2 LINE L1 -5 6577 6479 4 1792 1504 139 127 17 chr3 158312089 158312381 -1287402 - IAPEY3_LTR LTR ERVK -8 324 1 4 1792 1833 45 0 0 chr3 158312381 158312603 -1287180 - L1_Mus1 LINE L1 -83 6484 6263 4 1792 21 36 0 0 chr3 158312858 158312886 -1286897 + AT_rich Low_complexity Low_complexity 1 28 0 4 1792 764 352 62 0 chr3 158313846 158314153 -1285630 - MLT1F LTR MaLR 0 548 223 4 1792 962 262 88 68 chr3 158314304 158314686 -1285097 - MTE2a LTR MaLR -13 366 10 4 1792 2122 162 93 119 chr3 158314790 158315359 -1284424 - RLTR31B_Mm LTR ERVK -2 555 2 4 1792 2890 282 85 79 chr3 158315819 158317269 -1282514 - Lx5 LINE L1 -3 7047 5589 4 1792 25 31 0 0 chr3 158317402 158317434 -1282349 + AT_rich Low_complexity Low_complexity 1 32 0 4 1792 1150 67 0 41 chr3 158317434 158317606 -1282177 - L1_Mus1 LINE L1 -1 6566 6402 4 1792 3311 53 0 0 chr3 158317606 158318018 -1281765 + L1_Mus1 LINE L1 5657 6068 -499 4 1792 6359 123 17 14 chr3 158318019 158319067 -1280716 - Lx3_Mus LINE L1 -11 6998 5948 4 1792 13508 200 40 35 chr3 158319093 158321591 -1278192 - L1_Mur3 LINE L1 -1246 4631 2048 4 1792 399 21 0 0 chr3 158321591 158321639 -1278144 + (TG)n Simple_repeat Simple_repeat 2 49 0 4 1792 13508 200 40 35 chr3 158321639 158322473 -1277310 - L1_Mur3 LINE L1 -3830 2047 1282 4 1792 551 191 68 6 chr3 158322715 158322878 -1276905 - L1_Mur3 LINE L1 -6449 1279 1107 4 1792 2850 85 22 5 chr3 158323220 158323633 -1276150 + L1Md_F2 LINE L1 6162 6581 -1 4 1792 189 107 0 0 chr3 158323948 158323976 -1275807 + (A)n Simple_repeat Simple_repeat 1 28 0 4 1792 234 362 121 23 chr3 158326664 158326921 -1272862 - L2 LINE L2 -1973 1446 1165 4 1792 6280 102 36 29 chr3 158326971 158328458 -1271325 + L1_Mus3 LINE L1 5134 6637 -1 4 1792 390 74 0 0 chr3 158328477 158328531 -1271252 + (CA)n Simple_repeat Simple_repeat 2 55 0 4 1792 660 94 16 8 chr3 158328717 158328846 -1270937 + (TCTA)n Simple_repeat Simple_repeat 3 132 0 4 1792 614 246 0 0 chr3 158328872 158329010 -1270773 - B1_Mur4 SINE Alu -12 138 1 4 1792 2984 217 50 15 chr3 158329364 158330024 -1269759 - Lx4B LINE L1 -4 7054 6372 4 1792 354 377 31 78 chr3 158330152 158330474 -1269309 + MTE-int LTR MaLR 817 1123 -457 4 1792 268 232 45 34 chr3 158330644 158330733 -1269050 - MTEa LTR MaLR 0 379 290 4 1792 469 15 15 30 chr3 158331764 158331831 -1267952 + (TTTA)n Simple_repeat Simple_repeat 4 69 0 4 1792 433 310 35 0 chr3 158331836 158331949 -1267834 - B1F SINE Alu -17 132 16 4 1792 390 21 0 0 chr3 158333205 158333252 -1266531 + (TG)n Simple_repeat Simple_repeat 2 48 0 4 1792 567 328 25 30 chr3 158334085 158334266 -1265517 + B3A SINE B2 1 185 -13 4 1792 693 92 0 0 chr3 158334266 158334364 -1265419 + (CA)n Simple_repeat Simple_repeat 2 99 0 4 1792 567 328 25 30 chr3 158334364 158334380 -1265403 + B3A SINE B2 186 197 -1 4 27 2322 196 81 24 chr3 158334448 158334980 -1264803 + Lx2B LINE L1 6435 6996 -4 4 1793 420 20 0 0 chr3 158335379 158335428 -1264355 + (TTTA)n Simple_repeat Simple_repeat 1 49 0 4 1793 6965 109 26 27 chr3 158335428 158336595 -1263188 - Lx3_Mus LINE L1 -22 6987 5822 4 1793 1215 118 5 5 chr3 158337798 158337985 -1261798 + URR1A DNA MER1_type 40 226 0 4 1793 524 270 80 34 chr3 158337985 158338047 -1261736 - CYRA11_Mm Unknown Y-chromosome -448 169 97 4 1793 365 278 8 57 chr3 158338162 158338284 -1261499 + PB1D10 SINE Alu 2 117 0 4 1793 327 78 0 0 chr3 158338601 158338652 -1261131 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 4 1793 615 282 0 8 chr3 158339336 158339468 -1260315 + RSINE1 SINE B4 4 134 -31 4 1793 21 0 0 0 chr3 158339604 158339625 -1260158 + AT_rich Low_complexity Low_complexity 1 21 0 4 1793 240 299 19 45 chr3 158339712 158339866 -1259917 + L1MD LINE L1 4256 4405 -1741 4 1793 1229 34 0 20 chr3 158340016 158340165 -1259618 + B1_Mus2 SINE Alu 2 147 0 4 1793 214 312 64 13 chr3 158341305 158341383 -1258400 - ID4 SINE ID 0 83 2 4 1793 1969 146 51 8 chr3 158342309 158342661 -1257122 - Lx2 LINE L1 0 6997 6631 4 1793 459 0 0 0 chr3 158343245 158343296 -1256487 + (TG)n Simple_repeat Simple_repeat 1 51 0 4 1793 7604 77 2 2 chr3 158343790 158344859 -1254924 + L1Md_F2 LINE L1 4517 5585 -298 4 1793 7592 65 1 7 chr3 158344860 158345850 -1253933 + L1Md_F2 LINE L1 5587 6570 -12 4 1793 1197 42 0 14 chr3 158345859 158346005 -1253778 + B1_Mm SINE Alu 1 144 -3 4 1793 296 35 69 0 chr3 158346006 158346064 -1253719 + (CAAAA)n Simple_repeat Simple_repeat 4 65 0 4 1793 22 0 0 0 chr3 158346154 158346176 -1253607 + AT_rich Low_complexity Low_complexity 1 22 0 4 1793 1896 154 120 3 chr3 158346303 158346654 -1253129 - ORR1B1 LTR MaLR 0 394 3 4 1793 263 87 0 42 chr3 158346688 158346736 -1253047 + B1_Mur4 SINE Alu 105 150 0 4 1793 895 109 65 7 chr3 158346753 158346892 -1252891 + B1_Mm SINE Alu 1 147 0 4 1793 229 324 92 101 chr3 158346964 158347290 -1252493 - ORR1C2 LTR MaLR -57 327 5 4 1793 21 0 0 0 chr3 158348607 158348628 -1251155 + AT_rich Low_complexity Low_complexity 1 21 0 4 1793 571 360 72 22 chr3 158349017 158349295 -1250488 + B4A SINE B4 1 292 0 4 1793 870 140 0 0 chr3 158349332 158349511 -1250272 + (CA)n Simple_repeat Simple_repeat 2 180 0 4 1793 624 27 0 0 chr3 158349534 158349608 -1250175 + (GA)n Simple_repeat Simple_repeat 2 75 0 4 1793 243 361 12 12 chr3 158350297 158350381 -1249402 + B4 SINE B4 1 84 -208 4 1793 5422 55 1 4 chr3 158350388 158351070 -1248713 + L1Md_F2 LINE L1 5903 6582 0 4 1793 227 208 21 0 chr3 158351144 158351192 -1248591 + (CA)n Simple_repeat Simple_repeat 2 50 0 4 1793 485 71 14 0 chr3 158351195 158351265 -1248518 + (TAA)n Simple_repeat Simple_repeat 2 72 0 4 1793 314 353 142 9 chr3 158352701 158352927 -1246856 - Tigger5 DNA MER2_type -2150 256 1 4 1793 1066 123 7 0 chr3 158353403 158353549 -1246234 + B1_Mus1 SINE Alu 2 148 0 4 1793 432 77 32 32 chr3 158356113 158356207 -1243576 + (TA)n Simple_repeat Simple_repeat 2 95 0 4 1793 209 355 45 36 chr3 158357549 158357660 -1242123 + MIR SINE MIR 33 144 -118 4 1793 2129 208 25 10 chr3 158358024 158358431 -1241352 + MTC LTR MaLR 1 413 -8 4 1793 595 149 37 0 chr3 158358434 158358536 -1241247 + MTC-int LTR MaLR 2 107 -1151 4 1793 827 152 92 11 chr3 158358536 158358775 -1241008 + RMER6A LTR ERVK 1 297 -459 4 1793 1206 0 0 0 chr3 158358775 158358915 -1240868 - L1Md_F3 LINE L1 -787 5797 5658 4 1793 2550 136 55 21 chr3 158358915 158358934 -1240849 + RMER6A LTR ERVK 262 281 -475 4 1793 5879 42 8 3 chr3 158358934 158359669 -1240114 + L1Md_F3 LINE L1 5831 6569 -15 4 1793 2550 136 55 21 chr3 158359669 158359763 -1240020 + RMER6A LTR ERVK 282 376 -380 4 1793 528 16 0 0 chr3 158359763 158359824 -1239959 + (GA)n Simple_repeat Simple_repeat 1 61 0 4 1793 2550 136 55 21 chr3 158359824 158360184 -1239599 + RMER6A LTR ERVK 377 751 -5 4 1793 284 217 17 0 chr3 158360190 158360250 -1239533 + MTC-int LTR MaLR 103 163 -1095 4 1793 34146 49 1 16 chr3 158360272 158365476 -1234307 + L1Md_T LINE L1 466 5586 -297 4 1793 8378 38 0 0 chr3 158365476 158366504 -1233279 + L1Md_T LINE L1 5587 6582 0 4 1793 6046 35 1 0 chr3 158366504 158367222 -1232561 + L1Md_A LINE L1 5864 6582 0 4 1793 683 275 87 126 chr3 158367222 158367291 -1232492 + MTC-int LTR MaLR 150 207 -1051 4 1793 192 40 0 0 chr3 158367291 158367316 -1232467 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 4 1793 1914 198 37 19 chr3 158367316 158367745 -1232038 + MTC-int LTR MaLR 208 719 -539 4 1793 1301 244 30 45 chr3 158368381 158368780 -1231003 - Lx2B LINE L1 -1 6999 6607 4 1793 1009 153 9 23 chr3 158368761 158368982 -1230801 - L1_Mur2 LINE L1 -519 5358 5141 4 1793 1582 178 59 73 chr3 158369057 158369415 -1230368 - ORR1B1 LTR MaLR 0 394 42 4 1793 1312 317 85 32 chr3 158369521 158370108 -1229675 - MLT1E1A-int LTR MaLR -214 1275 658 4 1793 346 333 115 75 chr3 158370278 158370402 -1229381 - MLT1E1A-int LTR MaLR -1100 389 278 4 1793 396 0 0 0 chr3 158370402 158370446 -1229337 + (CA)n Simple_repeat Simple_repeat 1 44 0 4 1793 346 333 115 75 chr3 158370446 158370694 -1229089 - MLT1E1A-int LTR MaLR -1212 277 2 4 1793 507 328 157 20 chr3 158370695 158370950 -1228833 - MLT1E1A LTR MaLR -2 678 389 4 1793 311 42 42 0 chr3 158371294 158371342 -1228441 + (TTTTTG)n Simple_repeat Simple_repeat 6 55 0 4 1793 1152 61 0 26 chr3 158371342 158371493 -1228290 - B1_Mus1 SINE Alu 0 148 2 4 1793 8159 23 0 1 chr3 158372008 158373452 -1226331 - L1Md_A LINE L1 0 6582 5141 4 1793 192 40 0 0 chr3 158373727 158373752 -1226031 + (CAAA)n Simple_repeat Simple_repeat 3 27 0 4 1793 230 254 0 69 chr3 158373905 158373977 -1225806 + polypyrimidine Low_complexity Low_complexity 5 71 0 4 1793 1433 227 27 109 chr3 158373978 158374383 -1225400 - ORR1C2 LTR MaLR 0 384 13 4 1793 1113 50 43 0 chr3 158374392 158374533 -1225250 - B1_Mm SINE Alu 0 147 1 4 1793 195 42 0 0 chr3 158374581 158374605 -1225178 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 4 1793 230 143 0 39 chr3 158374808 158374859 -1224924 + (TTTG)n Simple_repeat Simple_repeat 2 50 0 4 1793 358 335 70 33 chr3 158374952 158375165 -1224618 - L1ME2 LINE L1 -280 5884 5664 4 1793 279 175 0 0 chr3 158375380 158375437 -1224346 + (CA)n Simple_repeat Simple_repeat 2 58 0 4 1793 285 29 0 0 chr3 158375440 158375474 -1224309 + (TG)n Simple_repeat Simple_repeat 1 34 0 4 1793 318 241 47 24 chr3 158376002 158376087 -1223696 - L1ME2 LINE L1 -825 5348 5262 4 1793 229 166 0 0 chr3 158376626 158376671 -1223112 - MIR SINE MIR -117 159 108 4 1793 23 0 0 0 chr3 158378718 158378741 -1221042 + AT_rich Low_complexity Low_complexity 1 23 0 4 1793 3298 51 2 0 chr3 158378764 158379159 -1220624 + MTA_Mm LTR MaLR 1 396 0 4 1793 2012 194 114 4 chr3 158379174 158379655 -1220128 + Lx9 LINE L1 7036 7569 -75 4 1793 183 335 99 41 chr3 158381015 158381186 -1218597 + L2 LINE L2 2519 2699 -720 4 1793 335 284 26 8 chr3 158381585 158381702 -1218081 - Lx7 LINE L1 -564 7132 7014 4 1793 23 54 0 0 chr3 158381703 158381740 -1218043 + AT_rich Low_complexity Low_complexity 1 37 0 4 1793 539 278 58 54 chr3 158382030 158382235 -1217548 + MTE-int LTR MaLR 774 979 -601 4 1793 2756 223 76 24 chr3 158382220 158382891 -1216892 + RMER13A LTR ERVK 14 719 -141 5 1793 399 309 78 11 chr3 158382930 158383126 -1216657 + MTE-int LTR MaLR 1159 1531 -49 4 1793 3792 22 0 0 chr3 158383498 158383960 -1215823 + L1Md_T LINE L1 5125 5586 -297 5 1793 8556 29 0 0 chr3 158383960 158384956 -1214827 + L1Md_T LINE L1 5587 6582 0 5 1793 549 368 117 20 chr3 158385057 158385459 -1214324 - MLT1H1 LTR MaLR 0 555 115 5 1793 646 85 0 0 chr3 158385956 158386050 -1213733 + L1_Mus2 LINE L1 6473 6566 0 5 1793 8741 130 14 12 chr3 158386391 158388197 -1211586 - Lx2 LINE L1 -2 6995 5180 5 1793 495 314 90 62 chr3 158388666 158388989 -1210794 + MLT1A0 LTR MaLR 17 348 -17 5 1793 7772 52 2 3 chr3 158388989 158390330 -1209453 - L1Md_F2 LINE L1 -1 6581 5243 5 1793 270 319 105 11 chr3 158390594 158390689 -1209094 + MLT1A0 LTR MaLR 349 452 -139 5 1793 1774 169 45 77 chr3 158391773 158392151 -1207632 - ORR1B2 LTR MaLR -1 366 1 5 1793 348 263 48 14 chr3 158392215 158392400 -1207383 - L1MA6 LINE L1 -3 6297 6110 5 1793 38926 37 0 9 chr3 158393031 158402609 -1197174 - L1Md_A LINE L1 0 6582 1 5 1793 2034 116 103 19 chr3 158403901 158404280 -1195503 - RLTR10A LTR ERVK 0 411 1 5 1793 23 0 0 0 chr3 158404761 158404784 -1194999 + AT_rich Low_complexity Low_complexity 1 23 0 5 1793 1170 95 18 12 chr3 158404853 158405024 -1194759 + B2_Mm1t SINE B2 2 173 -20 5 1793 261 140 548 0 chr3 158405044 158405137 -1194646 + B2_Mm2 SINE B2 47 190 -5 5 1793 777 51 0 0 chr3 158406815 158406913 -1192870 + (TG)n Simple_repeat Simple_repeat 1 98 0 5 1793 297 0 0 0 chr3 158407326 158407359 -1192424 + (CA)n Simple_repeat Simple_repeat 2 34 0 5 1793 34 72 0 0 chr3 158408392 158408461 -1191322 + AT_rich Low_complexity Low_complexity 1 69 0 5 1793 255 79 0 0 chr3 158408968 158409006 -1190777 + (TTTA)n Simple_repeat Simple_repeat 4 41 0 5 1793 3644 29 49 30 chr3 158409518 158409984 -1189799 - IAPLTR2_Mm LTR ERVK 0 475 1 5 1793 274 229 0 0 chr3 158410778 158410848 -1188935 + CT-rich Low_complexity Low_complexity 1 70 0 5 1793 192 217 0 0 chr3 158411272 158411318 -1188465 + (TA)n Simple_repeat Simple_repeat 2 47 0 5 1793 33 56 0 0 chr3 158411322 158411376 -1188407 + AT_rich Low_complexity Low_complexity 1 54 0 5 1793 1174 303 100 42 chr3 158411524 158412065 -1187718 - Lx4B LINE L1 0 7050 6479 5 1793 688 291 11 35 chr3 158412057 158412317 -1187466 - Lx4B LINE L1 -683 6367 6114 5 1793 204 237 0 48 chr3 158412571 158412633 -1187150 + T-rich Low_complexity Low_complexity 4 62 0 5 1793 3213 162 12 30 chr3 158413082 158413674 -1186109 - Lx4B LINE L1 -10 7048 6468 5 1793 35658 23 3 7 chr3 158413677 158418868 -1180915 + L1Md_A LINE L1 422 5586 -297 5 1793 8482 32 0 0 chr3 158418868 158419863 -1179920 + L1Md_A LINE L1 5587 6581 -1 5 1793 340 206 0 0 chr3 158419879 158419947 -1179836 - Lx4B LINE L1 -579 6479 6412 5 1793 467 170 85 0 chr3 158419974 158420068 -1179715 - Lx4B LINE L1 -715 6343 6242 5 1793 283 247 165 25 chr3 158420072 158420151 -1179632 - RLTR20D LTR ERVK 0 568 479 5 1793 702 0 0 0 chr3 158420151 158420229 -1179554 + (CA)n Simple_repeat Simple_repeat 2 79 0 5 1793 7113 146 24 31 chr3 158420244 158421787 -1177996 - Lx4B LINE L1 -908 6142 4567 5 1793 514 132 0 0 chr3 158421789 158421872 -1177911 + L1_Mur2 LINE L1 4148 4230 -1647 5 1793 683 75 45 36 chr3 158421882 158421992 -1177791 - Lx LINE L1 -513 6141 6031 5 1793 285 266 13 184 chr3 158422826 158422978 -1176805 + RLTR42 LTR ERVK 1 126 -113 5 1793 3763 232 76 61 chr3 158423139 158423610 -1176173 + RLTR42-int LTR ERVK 98 628 -4894 5 1793 228 67 0 0 chr3 158423610 158423640 -1176143 + (TA)n Simple_repeat Simple_repeat 2 31 0 5 1793 3763 232 76 61 chr3 158423640 158424044 -1175739 + RLTR42-int LTR ERVK 629 1027 -4495 5 1793 1139 88 0 0 chr3 158424044 158424191 -1175592 - B1_Mus2 SINE Alu 0 147 1 5 1793 3763 232 76 61 chr3 158424191 158424729 -1175054 + RLTR42-int LTR ERVK 1028 1534 -3988 5 1793 7611 30 1 3 chr3 158424827 158425770 -1174013 - L1Md_A LINE L1 -2 6580 5640 5 1793 328 262 55 33 chr3 158425841 158426009 -1173774 + RLTR42-int LTR ERVK 1639 1795 -3727 5 1793 1905 157 103 59 chr3 158426437 158426959 -1172824 + RLTR42-int LTR ERVK 1926 2470 -3052 5 1793 2335 171 55 17 chr3 158426963 158427425 -1172358 + RLTR42-int LTR ERVK 2646 3127 -2395 5 1793 546 16 0 0 chr3 158427425 158427488 -1172295 + (CA)n Simple_repeat Simple_repeat 1 63 0 5 1793 2335 171 55 17 chr3 158427488 158427501 -1172282 + RLTR42-int LTR ERVK 3128 3139 -2383 5 1793 462 36 0 0 chr3 158427516 158427572 -1172211 + (GA)n Simple_repeat Simple_repeat 1 56 0 5 1793 2481 102 14 51 chr3 158427617 158428030 -1171753 + Lx3A LINE L1 6577 6974 -7 5 1793 21 0 0 0 chr3 158428030 158428051 -1171732 + AT_rich Low_complexity Low_complexity 1 21 0 5 1793 1612 176 21 6 chr3 158428058 158428389 -1171394 + RLTR42-int LTR ERVK 3183 3518 -2004 5 1793 936 140 77 11 chr3 158428406 158428587 -1171196 + Lx3C LINE L1 6782 6974 -2 5 1793 27 29 0 0 chr3 158428838 158428872 -1170911 + AT_rich Low_complexity Low_complexity 1 34 0 5 1793 477 124 0 0 chr3 158429716 158429813 -1169970 + (A)n Simple_repeat Simple_repeat 1 97 0 5 1793 367 195 9 9 chr3 158430196 158430310 -1169473 + CT-rich Low_complexity Low_complexity 3 116 0 5 1793 872 111 0 37 chr3 158430373 158430560 -1169223 + (TC)n Simple_repeat Simple_repeat 1 180 0 5 1793 406 321 96 30 chr3 158430577 158430676 -1169107 - B4 SINE B4 -110 182 75 5 1793 5383 88 101 1 chr3 158430676 158431452 -1168331 + L1_Mus3 LINE L1 5779 6631 -7 5 1793 406 321 96 30 chr3 158431452 158431519 -1168264 - B4 SINE B4 -218 74 5 5 1793 6528 114 33 6 chr3 158432555 158433827 -1165956 + L1_Mus4 LINE L1 5330 6636 0 5 1793 349 356 4 102 chr3 158434081 158434306 -1165477 + B3A SINE B2 1 203 -13 5 1793 475 256 105 47 chr3 158434808 158434980 -1164803 + B3A SINE B2 1 182 -16 5 1793 824 151 114 22 chr3 158435316 158435587 -1164196 + MT2B LTR ERVL 1 435 -166 5 1793 343 262 111 82 chr3 158436818 158437026 -1162757 - B3 SINE B2 -2 214 1 5 1793 254 271 7 21 chr3 158437805 158437948 -1161835 + (CATATA)n Simple_repeat Simple_repeat 6 146 0 5 1793 621 323 75 19 chr3 158438123 158438391 -1161392 - B4A SINE B4 -9 283 1 5 1793 801 126 258 15 chr3 158438419 158438730 -1161053 - LTRIS5 LTR ERV1 0 512 1 5 1793 297 0 0 0 chr3 158438830 158438863 -1160920 + (TG)n Simple_repeat Simple_repeat 2 34 0 5 1793 1104 85 0 0 chr3 158438867 158439008 -1160775 - B1_Mus1 SINE Alu -7 141 1 5 1793 524 344 138 37 chr3 158439461 158439787 -1159996 - ORR1E LTR MaLR 0 359 1 5 1793 2776 161 165 15 chr3 158440294 158440895 -1158888 - RLTR17 LTR ERVK 0 692 2 5 1793 581 62 0 0 chr3 158442525 158442606 -1157177 + L1_Mus1 LINE L1 6487 6567 0 5 1793 228 35 0 0 chr3 158443124 158443153 -1156630 + (GA)n Simple_repeat Simple_repeat 2 30 0 5 1793 216 0 0 0 chr3 158443221 158443245 -1156538 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 5 1793 236 91 0 22 chr3 158443245 158443290 -1156493 + (TTTTG)n Simple_repeat Simple_repeat 1 44 0 5 1793 1195 48 7 0 chr3 158443290 158443435 -1156348 - B1_Mus2 SINE Alu 0 147 2 5 1793 207 69 0 0 chr3 158443445 158443474 -1156309 + (T)n Simple_repeat Simple_repeat 1 29 0 5 1793 10031 29 0 0 chr3 158443679 158445522 -1154261 - L1Md_T LINE L1 0 6582 4740 5 1793 5247 73 12 4 chr3 158445517 158446209 -1153574 - L1_Mus1 LINE L1 -105 6462 5766 5 1793 6652 191 36 17 chr3 158446205 158447631 -1152152 + Lx2B LINE L1 5510 7033 -25 5 1793 337 222 47 47 chr3 158447858 158447943 -1151840 + B4 SINE B4 1 85 -207 5 1793 401 96 21 62 chr3 158447965 158448110 -1151673 + A-rich Low_complexity Low_complexity 5 143 0 5 1793 543 293 56 31 chr3 158448126 158448288 -1151495 + B4A SINE B4 113 278 -14 5 1793 624 27 0 0 chr3 158448357 158448431 -1151352 + (CACAT)n Simple_repeat Simple_repeat 4 77 0 5 1793 627 265 40 30 chr3 158448508 158448710 -1151073 + Lx6 LINE L1 7214 7417 -43 5 1793 215 140 0 20 chr3 158448710 158448761 -1151022 + GA-rich Low_complexity Low_complexity 3 52 0 5 1793 1180 62 0 0 chr3 158449148 158449294 -1150489 + B1_Mm SINE Alu 2 147 0 5 1793 24 0 0 0 chr3 158449406 158449430 -1150353 + AT_rich Low_complexity Low_complexity 1 24 0 5 1793 1095 102 0 0 chr3 158451437 158451584 -1148199 + B1_Mus1 SINE Alu 2 148 0 5 1793 639 330 57 0 chr3 158451877 158452071 -1147712 + B4 SINE B4 14 218 -74 5 1793 5908 202 44 20 chr3 158452491 158454602 -1145181 + Lx4B LINE L1 4821 6992 -8 5 1793 286 335 53 14 chr3 158454872 158455019 -1144764 - MTE2a LTR MaLR -245 176 31 5 1793 261 252 128 75 chr3 158455551 158455684 -1144099 + MIR SINE MIR 41 180 -82 5 1793 277 333 0 0 chr3 158456384 158456477 -1143306 - PB1D10 SINE Alu -3 114 22 5 1793 3036 118 0 0 chr3 158456587 158457028 -1142755 - L1_Mm LINE L1 -682 5201 4761 5 1793 2162 172 69 16 chr3 158458042 158458478 -1141305 - RMER6B LTR ERVK -2 459 1 5 1793 25 0 0 0 chr3 158459186 158459211 -1140572 + AT_rich Low_complexity Low_complexity 1 25 0 5 1793 33 0 0 0 chr3 158459226 158459259 -1140524 + AT_rich Low_complexity Low_complexity 1 33 0 5 1793 32603 108 9 12 chr3 158459419 158461349 -1138434 + L1Md_F2 LINE L1 422 2350 -3533 5 1793 249 57 0 0 chr3 158461349 158461384 -1138399 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 5 1793 32603 68 5 1 chr3 158461384 158464610 -1135173 + L1Md_F2 LINE L1 2351 5584 -299 5 1793 7980 56 1 0 chr3 158464611 158465606 -1134177 + L1Md_F2 LINE L1 5587 6582 0 5 224 237 337 80 30 chr3 158465923 158466186 -1133597 + L1MB3 LINE L1 5795 6070 -113 5 1794 15238 200 99 43 chr3 158466842 158469543 -1130240 + L1_Mur2 LINE L1 848 3797 -2080 5 1794 441 0 0 0 chr3 158469543 158469592 -1130191 + (TA)n Simple_repeat Simple_repeat 1 49 0 5 1794 15238 204 77 46 chr3 158469592 158471644 -1128139 + L1_Mur2 LINE L1 3798 5814 -63 5 1794 2032 186 78 57 chr3 158472679 158473221 -1126562 + Lx4B LINE L1 6501 7053 -5 5 1794 462 79 0 0 chr3 158474263 158474326 -1125457 + (GGA)n Simple_repeat Simple_repeat 2 64 0 5 1794 452 276 25 9 chr3 158474487 158474610 -1125173 + MIR SINE MIR 4 132 -136 5 1794 270 0 0 0 chr3 158474809 158474839 -1124944 + (TC)n Simple_repeat Simple_repeat 2 31 0 5 1794 369 58 0 0 chr3 158474839 158474890 -1124893 + (TA)n Simple_repeat Simple_repeat 1 52 0 5 1794 1209 47 8 29 chr3 158475195 158475441 -1124342 + (TTTC)n Simple_repeat Simple_repeat 1 241 0 5 1794 1726 83 68 0 chr3 158475509 158475787 -1123996 - MusHAL1 LINE L1 -626 2086 1790 5 1794 236 86 0 0 chr3 158475787 158475822 -1123961 - L1VL2 LINE L1 -2952 2931 2897 5 1794 5844 109 20 40 chr3 158475828 158476968 -1122815 - L1VL2 LINE L1 -3382 2501 1546 5 1794 8188 45 1 1 chr3 158476968 158477963 -1121820 + L1Md_F2 LINE L1 5587 6581 -1 5 1794 5787 127 20 30 chr3 158477963 158479028 -1120755 - L1VL2 LINE L1 -4338 1545 475 5 1794 406 344 9 14 chr3 158479391 158479609 -1120174 - L1MC4a LINE L1 -2007 5875 5659 5 1794 741 312 85 11 chr3 158480014 158480380 -1119403 - L1ME3A LINE L1 -346 5827 5435 5 1794 384 373 95 30 chr3 158480652 158480956 -1118827 + L2a LINE L2 2957 3280 -146 5 1794 292 284 41 152 chr3 158481650 158481831 -1117952 + MIRc SINE MIR 46 228 -40 6 1794 1092 67 0 0 chr3 158482185 158482320 -1117463 + B1_Mus1 SINE Alu 1 135 -13 6 1794 355 63 16 16 chr3 158482320 158482384 -1117399 + (CAAA)n Simple_repeat Simple_repeat 1 64 0 6 1794 285 297 0 13 chr3 158482561 158482636 -1117147 + ID4 SINE ID 4 77 -6 6 1794 259 194 29 15 chr3 158482852 158482920 -1116863 + CT-rich Low_complexity Low_complexity 3 71 0 6 1794 22 80 0 0 chr3 158483589 158483639 -1116144 + AT_rich Low_complexity Low_complexity 1 50 0 6 1794 211 388 50 0 chr3 158484606 158484686 -1115097 - L2b LINE L2 -41 3334 3251 6 1794 1335 258 60 58 chr3 158485180 158485333 -1114450 + RMER5 LTR ERV1 98 237 -297 6 1794 1112 98 0 0 chr3 158485333 158485476 -1114307 + B1_Mus1 SINE Alu 1 143 -5 6 1794 1335 258 60 58 chr3 158485476 158485737 -1114046 + RMER5 LTR ERV1 238 513 -21 6 1794 237 163 0 0 chr3 158485746 158485795 -1113988 + GA-rich Low_complexity Low_complexity 1 49 0 6 1794 5252 188 80 13 chr3 158486432 158487511 -1112272 - Lx4B LINE L1 -2 7056 5906 6 1794 181 91 22 43 chr3 158488332 158488378 -1111405 + T-rich Low_complexity Low_complexity 2 46 0 6 1794 9957 159 46 20 chr3 158489270 158492346 -1107437 - Lx2 LINE L1 0 6997 3828 6 1794 872 310 64 34 chr3 158492666 158492933 -1106850 + B4A SINE B4 6 280 -12 6 1794 237 309 0 0 chr3 158492935 158493003 -1106780 + (CATATA)n Simple_repeat Simple_repeat 3 70 0 6 1794 285 258 40 40 chr3 158493042 158493143 -1106640 + L1MD3 LINE L1 7294 7394 -601 6 1794 387 0 0 0 chr3 158493279 158493322 -1106461 + (CA)n Simple_repeat Simple_repeat 1 43 0 6 1794 344 298 53 69 chr3 158493323 158493568 -1106215 + L1MD3 LINE L1 7639 7879 -116 6 1794 1207 265 53 50 chr3 158493570 158493928 -1105855 - ORR1E LTR MaLR 0 359 1 6 1794 432 0 0 0 chr3 158494090 158494138 -1105645 + (TA)n Simple_repeat Simple_repeat 2 49 0 6 1794 31 0 0 0 chr3 158494522 158494553 -1105230 + AT_rich Low_complexity Low_complexity 1 31 0 6 1794 1345 83 0 15 chr3 158494586 158494781 -1105002 + MTB LTR MaLR 1 192 -204 6 1794 3325 75 7 2 chr3 158494781 158495234 -1104549 + L1_Mus1 LINE L1 6113 6567 0 6 1794 1658 50 14 5 chr3 158495280 158495499 -1104284 + MTB LTR MaLR 180 400 0 6 1794 4911 110 54 6 chr3 158495499 158496453 -1103330 + MTB-int LTR MaLR 1 1098 0 6 1794 2792 85 5 48 chr3 158496453 158496817 -1102966 + MTB LTR MaLR 1 352 -48 6 1794 6993 30 0 0 chr3 158496817 158497637 -1102146 - L1Md_T LINE L1 0 6582 5763 6 1794 2792 85 5 48 chr3 158497637 158497690 -1102093 + MTB LTR MaLR 353 400 0 6 1794 959 282 107 89 chr3 158497777 158498124 -1101659 + MTD LTR MaLR 3 395 -24 6 1794 274 309 21 37 chr3 158498179 158498341 -1101442 - Lx7 LINE L1 0 7696 7535 6 1794 198 0 0 0 chr3 158498341 158498363 -1101420 + (CA)n Simple_repeat Simple_repeat 2 23 0 6 1794 274 309 21 37 chr3 158498363 158498388 -1101395 - Lx7 LINE L1 -162 7534 7512 6 1794 2072 267 60 13 chr3 158498404 158499508 -1100275 - Lx7 LINE L1 -1239 6457 5303 6 1794 234 296 104 64 chr3 158500000 158500202 -1099581 + RMER5 LTR ERV1 162 371 -163 1 1794 452 18 18 0 chr3 158500334 158500391 -1099392 + (TG)n Simple_repeat Simple_repeat 2 59 0 2 1794 490 318 28 17 chr3 158500427 158500648 -1099135 - B4A SINE B4 -24 268 3 3 1794 699 329 42 0 chr3 158500648 158500861 -1098922 - B4 SINE B4 -62 230 9 4 1794 286 340 20 10 chr3 158500932 158501033 -1098750 + RMER5 LTR ERV1 433 534 0 1 1794 374 108 15 0 chr3 158501118 158501183 -1098600 + (TA)n Simple_repeat Simple_repeat 1 66 0 5 1794 441 270 93 46 chr3 158501940 158501984 -1097799 - RMER5 LTR ERV1 -269 265 222 6 1794 3139 64 0 25 chr3 158501984 158502416 -1097367 + BGLII LTR ERVK 1 421 0 7 1794 441 270 93 46 chr3 158502416 158502565 -1097218 - RMER5 LTR ERV1 -313 221 63 6 1794 262 229 67 92 chr3 158502482 158502602 -1097181 - MER45R DNA Tip100 -481 1100 984 8 1794 283 329 73 23 chr3 158502716 158502893 -1096890 - MER57C2 LTR ERV1 0 434 249 9 1794 207 366 90 15 chr3 158502969 158503102 -1096681 - MIRb SINE MIR -15 253 111 1 1794 319 371 34 25 chr3 158503451 158503570 -1096213 - LTR33B LTR ERVL -325 178 59 1 1794 23 78 0 0 chr3 158503578 158503629 -1096154 + AT_rich Low_complexity Low_complexity 1 51 0 1 1794 266 60 14 82 chr3 158504107 158504180 -1095603 + T-rich Low_complexity Low_complexity 1 68 0 1 1794 1250 314 23 25 chr3 158504392 158504833 -1094950 - Lx5 LINE L1 0 7050 6611 1 1794 23 33 0 0 chr3 158504905 158504935 -1094848 + AT_rich Low_complexity Low_complexity 1 30 0 1 1794 253 317 114 36 chr3 158505535 158505702 -1094081 - MER57E1 LTR ERV1 -4 368 189 1 1794 410 0 0 20 chr3 158505916 158505967 -1093816 + (TTA)n Simple_repeat Simple_repeat 2 51 0 1 1794 4958 157 7 17 chr3 158506500 158507364 -1092419 - Lx2B LINE L1 -1 6999 6145 1 1794 3925 175 20 1 chr3 158507364 158508155 -1091628 + L1_Mur2 LINE L1 4214 5019 -858 1 1794 21 36 0 0 chr3 158509171 158509199 -1090584 + AT_rich Low_complexity Low_complexity 1 28 0 2 1794 314 259 71 0 chr3 158509361 158509446 -1090337 + RSINE1 SINE B4 42 132 -33 2 1794 237 65 0 0 chr3 158509604 158509635 -1090148 + (TG)n Simple_repeat Simple_repeat 1 31 0 2 1794 223 232 0 51 chr3 158510172 158510231 -1089552 + CT-rich Low_complexity Low_complexity 4 59 0 2 1794 396 0 0 0 chr3 158511166 158511210 -1088573 + (TTTTG)n Simple_repeat Simple_repeat 1 44 0 2 1794 230 196 22 0 chr3 158511991 158512037 -1087746 - LTR84b LTR ERVL -631 130 84 2 1794 2450 90 8 49 chr3 158512047 158512434 -1087349 - L1Md_F2 LINE L1 0 6582 6212 2 1794 404 263 62 114 chr3 158512597 158512790 -1086993 + MTE2a LTR MaLR 1 183 -196 2 1794 653 284 0 0 chr3 158512791 158512925 -1086858 + B3A SINE B2 3 136 -62 2 1794 642 297 190 21 chr3 158512947 158513332 -1086451 - RMER4A LTR ERVK 0 466 17 2 1794 336 130 0 0 chr3 158513381 158513450 -1086333 + (CA)n Simple_repeat Simple_repeat 2 70 0 3 1794 735 295 28 5 chr3 158513469 158513680 -1086103 + MTE2a LTR MaLR 164 379 0 2 1794 1045 245 95 0 chr3 158513771 158514012 -1085771 + MTD LTR MaLR 1 264 -155 3 1794 321 247 86 43 chr3 158514125 158514218 -1085565 + MLT2B1 LTR ERVL 56 152 -262 3 1794 1085 91 0 0 chr3 158515364 158515507 -1084276 - B1_Mm SINE Alu -4 143 1 3 1794 2764 168 95 28 chr3 158515803 158516348 -1083435 - RMER13A LTR ERVK 0 860 279 3 1794 1803 156 20 79 chr3 158516348 158516378 -1083405 - RLTR9A LTR ERVK 0 368 345 3 1794 2954 49 0 16 chr3 158516378 158516749 -1083034 - RLTR10B2 LTR ERVK 0 365 1 3 1794 1803 156 20 79 chr3 158516749 158517109 -1082674 - RLTR9A LTR ERVK -24 344 1 3 1794 1757 145 7 17 chr3 158517109 158517396 -1082387 - RMER13A LTR ERVK -576 284 1 3 1794 408 305 98 32 chr3 158517599 158517803 -1081980 + MLT1A0 LTR MaLR 105 344 -46 3 1794 584 333 68 51 chr3 158517814 158518168 -1081615 + MLT-int LTR MaLR 2 361 -1374 3 1794 1251 282 100 6 chr3 158518139 158518478 -1081305 + MTEa LTR MaLR 9 379 0 3 1794 241 24 0 68 chr3 158518524 158518568 -1081215 + (TTTTTG)n Simple_repeat Simple_repeat 2 42 0 4 1794 903 256 48 18 chr3 158518572 158518799 -1080984 + MTEb LTR MaLR 146 379 0 4 1794 228 295 44 33 chr3 158518725 158518816 -1080967 - MLT1H-int LTR MaLR -1041 368 277 4 1794 30928 75 4 4 chr3 158519163 158524353 -1075430 + L1Md_F2 LINE L1 304 5589 -297 4 1794 8098 46 3 2 chr3 158524353 158525347 -1074436 + L1Md_F2 LINE L1 5590 6584 -1 4 1794 621 303 4 124 chr3 158526462 158526703 -1073080 - B4 SINE B4 -15 277 66 4 1794 256 64 43 0 chr3 158526935 158526982 -1072801 + (TTTTG)n Simple_repeat Simple_repeat 5 53 0 4 1794 230 301 100 37 chr3 158527361 158527501 -1072282 + MIRc SINE MIR 21 170 -38 4 1794 1914 222 76 21 chr3 158528550 158528986 -1070797 - RLTR11A LTR ERVK -68 460 1 4 1794 1029 255 93 4 chr3 158530057 158530325 -1069458 - MTEb LTR MaLR -9 370 79 4 1794 459 238 91 68 chr3 158531522 158531698 -1068085 + MER53 DNA hAT 4 183 -10 4 1794 447 19 0 0 chr3 158532038 158532090 -1067693 + (CA)n Simple_repeat Simple_repeat 1 52 0 5 1794 252 0 0 0 chr3 158532090 158532117 -1067666 + (GA)n Simple_repeat Simple_repeat 2 29 0 5 1794 189 343 107 40 chr3 158532960 158533109 -1066674 - MIR SINE MIR -1 261 103 5 1794 234 342 0 0 chr3 158533244 158533317 -1066466 + (CA)n Simple_repeat Simple_repeat 1 73 0 5 1794 374 308 51 150 chr3 158533914 158534208 -1065575 + Tigger5 DNA MER2_type 31 295 -2111 5 1794 3958 28 51 0 chr3 158534393 158534862 -1064921 + MT2_Mm LTR ERVL 1 493 0 5 1794 21384 62 11 0 chr3 158534862 158538322 -1061461 + MERVL_2A-int LTR ERVL 1 3608 -2153 5 1794 2856 39 0 3 chr3 158538322 158538660 -1061123 - IAPLTR1a_Mm LTR ERVK 0 337 1 5 1794 13783 22 1 4 chr3 158538660 158540319 -1059464 - IAPEz-int LTR ERVK 0 6481 4827 5 1794 4233 6 0 0 chr3 158540305 158540791 -1058992 - IAPEz-int LTR ERVK -2752 3729 3244 5 1794 20593 36 40 14 chr3 158540783 158543456 -1056327 - IAPEz-int LTR ERVK -3730 2751 8 5 1794 2867 36 0 3 chr3 158543456 158543794 -1055989 - IAPLTR1a_Mm LTR ERVK 0 337 1 5 1794 15188 28 10 0 chr3 158543794 158545646 -1054137 + MERVL_2A-int LTR ERVL 3501 5371 -114 5 1794 306 181 26 53 chr3 158545646 158545722 -1054061 + ORR1A3-int LTR MaLR 567 640 -1323 5 1794 302 0 0 0 chr3 158545722 158545760 -1054023 + MERVL_2A-int LTR ERVL 5448 5485 0 5 1794 3949 30 51 0 chr3 158545760 158546229 -1053554 + MT2_Mm LTR ERVL 1 493 0 5 1794 496 294 8 0 chr3 158546790 158546916 -1052867 - B1_Mur3 SINE Alu -6 143 17 5 1794 22 0 0 0 chr3 158547244 158547266 -1052517 + AT_rich Low_complexity Low_complexity 1 22 0 5 1794 1132 71 0 0 chr3 158547268 158547409 -1052374 - B1_Mus1 SINE Alu -7 141 1 6 1794 555 326 92 30 chr3 158547496 158547799 -1051984 - MLT1A1 LTR MaLR -70 338 17 6 1794 1470 226 121 46 chr3 158548657 158549070 -1050713 + RLTR41 LTR ERV1 1 444 -2 6 1794 227 289 19 0 chr3 158549157 158549209 -1050574 + MIRb SINE MIR 200 252 -16 6 1794 205 290 29 0 chr3 158550493 158550562 -1049221 + (CATA)n Simple_repeat Simple_repeat 1 71 0 6 1794 946 107 11 33 chr3 158551035 158551219 -1048564 + T-rich Low_complexity Low_complexity 1 180 0 6 1794 1282 299 45 35 chr3 158552912 158553286 -1046497 - MTEa LTR MaLR -1 378 1 6 1794 215 256 0 0 chr3 158553924 158553967 -1045816 - RSINE1 SINE B4 -111 54 12 6 1794 330 26 0 0 chr3 158554002 158554041 -1045742 + (TG)n Simple_repeat Simple_repeat 2 40 0 6 1794 192 259 0 0 chr3 158554111 158554246 -1045537 + (TGAA)n Simple_repeat Simple_repeat 3 137 0 6 1794 189 147 0 0 chr3 158554415 158554449 -1045334 + (TCTG)n Simple_repeat Simple_repeat 3 36 0 7 1794 21 0 0 0 chr3 158555591 158555612 -1044171 + AT_rich Low_complexity Low_complexity 1 21 0 7 1794 341 333 53 53 chr3 158555612 158555799 -1043984 - B3 SINE B2 0 216 30 7 1794 552 133 0 0 chr3 158555931 158556021 -1043762 - L1_Mur2 LINE L1 -1478 4399 4310 7 1794 7727 149 9 6 chr3 158556015 158557301 -1042482 + Lx LINE L1 4396 5685 -198 7 1794 6101 106 81 3 chr3 158557348 158558894 -1040889 - L1_Mus3 LINE L1 -8 6630 4961 7 1794 5698 128 44 12 chr3 158558896 158559787 -1039996 + Lx LINE L1 5688 6609 -45 7 1794 369 0 0 0 chr3 158559787 158559828 -1039955 + (CA)n Simple_repeat Simple_repeat 2 42 0 7 1794 5698 128 44 12 chr3 158559828 158559841 -1039942 + Lx LINE L1 6610 6621 -33 7 1794 427 268 55 39 chr3 158560292 158560420 -1039363 + RSINE1 SINE B4 3 132 -33 7 1794 405 0 0 0 chr3 158560441 158560486 -1039297 + (CA)n Simple_repeat Simple_repeat 1 45 0 7 1794 37 23 0 0 chr3 158560505 158560549 -1039234 + AT_rich Low_complexity Low_complexity 1 44 0 7 1794 21 71 0 0 chr3 158560914 158560956 -1038827 + AT_rich Low_complexity Low_complexity 1 42 0 8 1794 4410 138 18 6 chr3 158560965 158561673 -1038110 - Lx LINE L1 -13 6641 5925 8 1794 2385 114 3 1 chr3 158561674 158562046 -1037737 + Lx LINE L1 5558 5927 -727 8 1794 461 325 40 0 chr3 158562801 158562952 -1036831 + RSINE1 SINE B4 5 161 -4 8 1794 799 62 17 17 chr3 158563773 158563888 -1035895 + MTA_Mm LTR MaLR 1 115 -281 8 1794 6033 17 3 0 chr3 158563888 158564585 -1035198 + L1Md_A LINE L1 4888 5586 -297 8 1794 8340 35 0 3 chr3 158564585 158565584 -1034199 + L1Md_A LINE L1 5587 6582 0 8 1794 2467 48 3 16 chr3 158565584 158565901 -1033882 + MTA_Mm LTR MaLR 84 396 0 8 1794 22 70 0 0 chr3 158566475 158566518 -1033265 + AT_rich Low_complexity Low_complexity 1 43 0 8 1794 454 296 30 30 chr3 158567500 158567667 -1032116 - RLTR11B LTR ERVK -3 450 284 8 1794 458 312 58 67 chr3 158567697 158568027 -1031756 - RLTR11B LTR ERVK -126 327 1 8 1794 615 187 112 16 chr3 158569782 158569907 -1029876 - MTD LTR MaLR -2 417 281 8 1794 262 310 136 25 chr3 158570174 158570320 -1029463 - B3 SINE B2 -17 178 13 8 1794 1009 333 74 41 chr3 158570619 158571202 -1028581 - RLTR18 LTR ERVK -6 610 9 8 1794 409 269 94 64 chr3 158571295 158571466 -1028317 - B3A SINE B2 -11 184 9 9 1794 709 94 39 0 chr3 158571607 158571735 -1028048 + Lx2 LINE L1 6865 6997 0 9 1794 580 85 0 11 chr3 158572095 158572190 -1027593 - L1Md_F2 LINE L1 -10 6572 6479 9 1794 509 324 0 7 chr3 158572540 158572683 -1027100 - ID_B1 SINE B4 -2 222 81 9 1794 22 0 0 0 chr3 158574404 158574426 -1025357 + AT_rich Low_complexity Low_complexity 1 22 0 9 1794 309 286 20 20 chr3 158574428 158574500 -1025283 + ID SINE ID 2 74 -150 9 1794 182 37 0 36 chr3 158574500 158574528 -1025255 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 9 1794 309 286 20 20 chr3 158574528 158574555 -1025228 + ID_B1 SINE B4 75 101 -123 9 1794 387 0 0 0 chr3 158575732 158575775 -1024008 + (CA)n Simple_repeat Simple_repeat 2 44 0 9 1794 232 262 60 102 chr3 158576402 158576568 -1023215 + LTR82A LTR ERVL 635 793 -79 9 1794 898 266 14 19 chr3 158576720 158576927 -1022856 + B3 SINE B2 4 209 -7 9 1794 289 274 0 0 chr3 158577226 158577299 -1022484 - B4A SINE B4 -6 286 214 1 1794 306 0 0 0 chr3 158577362 158577396 -1022387 + (ATTG)n Simple_repeat Simple_repeat 4 37 0 1 1794 547 339 10 30 chr3 158577396 158577594 -1022189 - B4A SINE B4 -75 217 24 1 1794 2917 201 24 21 chr3 158578812 158579172 -1020611 - Lx4B LINE L1 -808 6250 5888 1 1794 922 51 0 14 chr3 158579172 158579310 -1020473 + L1Md_F3 LINE L1 6448 6583 -1 1 1794 2917 201 24 21 chr3 158579310 158579570 -1020213 - Lx4B LINE L1 -1171 5887 5628 1 1794 1114 171 0 30 chr3 158580176 158580375 -1019408 + B2_Mm2 SINE B2 1 193 -2 1 1794 649 287 50 77 chr3 158580560 158580938 -1018845 - RMER5 LTR ERV1 -49 485 118 1 1794 339 303 88 36 chr3 158581247 158581384 -1018399 - MTEa LTR MaLR -13 366 223 1 1794 363 284 163 24 chr3 158581624 158581833 -1017950 + MER67C LTR ERV1 3 240 -471 1 1794 640 200 10 32 chr3 158581833 158582014 -1017769 - URR1A DNA MER1_type -2 224 47 1 1794 2087 129 3 10 chr3 158582014 158582328 -1017455 - L1_Mus3 LINE L1 -32 5851 5540 1 1794 5432 79 8 1 chr3 158582328 158583060 -1016723 + L1_Mus3 LINE L1 5890 6626 -12 1 1794 369 62 0 0 chr3 158583060 158583108 -1016675 + (TA)n Simple_repeat Simple_repeat 1 48 0 1 1794 414 215 20 88 chr3 158583111 158583213 -1016570 - URR1A DNA MER1_type -126 100 6 1 1794 213 94 0 0 chr3 158584352 158584384 -1015399 + (T)n Simple_repeat Simple_repeat 1 32 0 1 1794 3681 104 39 15 chr3 158584400 158584430 -1015353 - L1_Mus4 LINE L1 0 6636 6609 1 1794 3179 50 2 0 chr3 158584430 158584827 -1014956 - L1Md_F2 LINE L1 -13 6569 6172 1 1794 3681 104 39 15 chr3 158584827 158585341 -1014442 - L1_Mus4 LINE L1 -28 6608 6079 1 1794 21 36 0 0 chr3 158585753 158585781 -1014002 + AT_rich Low_complexity Low_complexity 1 28 0 1 1794 258 308 136 8 chr3 158587029 158587147 -1012636 - MLT1J-int LTR MaLR -981 406 274 1 1794 208 212 29 29 chr3 158587223 158587291 -1012492 + A-rich Low_complexity Low_complexity 1 68 0 1 1794 24218 125 49 16 chr3 158588641 158589510 -1010273 - L1_Mus4 LINE L1 -436 6200 5295 1 1794 3301 64 0 46 chr3 158589510 158589970 -1009813 - L1Md_F2 LINE L1 -11 6571 6133 1 1794 24218 167 8 36 chr3 158589970 158592464 -1007319 - L1_Mus4 LINE L1 -589 5294 2792 1 1794 195 42 0 0 chr3 158592464 158592488 -1007295 + (TTG)n Simple_repeat Simple_repeat 1 24 0 1 1794 24218 170 17 31 chr3 158592488 158592512 -1007271 - L1_Mus4 LINE L1 -3092 2791 2769 1 1794 937 65 0 0 chr3 158592512 158592635 -1007148 - B1_Mus1 SINE Alu 0 148 26 1 1794 24218 170 17 31 chr3 158592635 158594860 -1004923 - L1_Mus4 LINE L1 -3092 2768 548 1 1794 24 32 0 0 chr3 158594934 158594965 -1004818 + AT_rich Low_complexity Low_complexity 1 31 0 1 1794 379 228 65 11 chr3 158596010 158596103 -1003680 + ID_B1 SINE B4 127 224 0 1 1794 329 317 40 40 chr3 158596439 158596564 -1003219 + Tigger7 DNA MER2_type 72 196 -2295 1 1795 1891 205 26 3 chr3 158598495 158598843 -1000940 - Lx4A LINE L1 -92 6966 6611 1 1795 1826 184 24 0 chr3 158598848 158599185 -1000598 + L1_Mur2 LINE L1 4850 5194 -683 1 1795 32645 92 7 12 chr3 158599903 158602936 -996847 + L1Md_F3 LINE L1 419 3451 -2432 1 1795 1386 56 0 53 chr3 158602936 158603142 -996641 + L1Md_F3 LINE L1 6378 6572 -12 1 1795 32645 67 4 6 chr3 158603142 158605296 -994487 + L1Md_F3 LINE L1 3452 5586 -297 1 1795 8161 41 1 4 chr3 158605296 158606285 -993498 + L1Md_F3 LINE L1 5587 6572 -12 1 1795 207 0 0 0 chr3 158606369 158606392 -993391 + (TA)n Simple_repeat Simple_repeat 2 24 0 1 1795 4726 181 24 11 chr3 158606891 158607851 -991932 - L1_Mur2 LINE L1 -204 5673 4702 1 1795 3830 128 20 0 chr3 158607853 158608437 -991346 + Lx2 LINE L1 6402 6997 0 1 1795 447 348 60 66 chr3 158608664 158608996 -990787 - ORR1E LTR MaLR -23 336 7 1 1795 495 312 27 65 chr3 158609408 158609593 -990190 + B3A SINE B2 14 191 -7 1 1795 23 0 0 0 chr3 158609593 158609616 -990167 + AT_rich Low_complexity Low_complexity 1 23 0 1 1795 393 309 58 64 chr3 158611971 158612144 -987639 - RMER30 DNA MER1_type -30 172 1 1 1795 362 346 77 47 chr3 158612289 158612459 -987324 + MER77 LTR ERVL 215 389 -218 1 1795 932 203 158 153 chr3 158612549 158612683 -987100 - ORR1D2 LTR MaLR -8 362 242 1 1795 397 14 71 0 chr3 158612683 158612753 -987030 + (CAGT)n Simple_repeat Simple_repeat 1 75 0 1 1795 932 203 158 153 chr3 158612753 158612978 -986805 - ORR1D2 LTR MaLR -129 241 1 1 1795 26 0 0 0 chr3 158613492 158613518 -986265 + AT_rich Low_complexity Low_complexity 1 26 0 1 1795 737 59 20 0 chr3 158613523 158613625 -986158 + (GGAAA)n Simple_repeat Simple_repeat 2 105 0 1 1795 6433 83 15 10 chr3 158613853 158614776 -985007 + L1_Mus2 LINE L1 5663 6565 -1 1 1795 3890 174 11 4 chr3 158615577 158616327 -983456 + L1_Mur2 LINE L1 4191 4945 -932 1 1795 6272 135 50 38 chr3 158616312 158617628 -982155 + L1_Mus2 LINE L1 5711 6997 0 1 1795 7898 30 7 4 chr3 158617689 158618643 -981140 + L1Md_F3 LINE L1 5628 6584 0 1 1795 180 0 0 0 chr3 158618669 158618689 -981094 + (CAA)n Simple_repeat Simple_repeat 2 21 0 1 1795 190 300 86 0 chr3 158619661 158619731 -980052 + MIRc SINE MIR 166 241 -27 1 1795 707 112 30 0 chr3 158621616 158621750 -978033 + (GA)n Simple_repeat Simple_repeat 1 138 0 1 1795 360 234 0 58 chr3 158622328 158622346 -977437 + B4 SINE B4 72 84 -208 1 1795 532 110 0 0 chr3 158622346 158622419 -977364 + B1_Mus1 SINE Alu 1 73 -75 1 1795 1110 30 0 0 chr3 158622425 158622559 -977224 + (GAAA)n Simple_repeat Simple_repeat 3 136 0 1 1795 300 300 101 60 chr3 158623167 158623316 -976467 + L1M4c LINE L1 364 518 -5866 1 1795 257 309 79 12 chr3 158624616 158624780 -975003 + L1M4c LINE L1 538 712 -5672 1 1795 1284 197 179 76 chr3 158624807 158625187 -974596 + RLTR33 LTR ERVK 175 593 -85 1 1795 2218 285 95 45 chr3 158625391 158626935 -972848 + L1M4c LINE L1 735 2355 -4029 1 1795 318 261 147 15 chr3 158626978 158627114 -972669 + L1MB1 LINE L1 5842 5995 -173 1 1795 200 200 0 22 chr3 158627390 158627436 -972347 + (TGGG)n Simple_repeat Simple_repeat 4 48 0 1 1795 2397 45 0 0 chr3 158627436 158627728 -972055 + L1_Mus1 LINE L1 6275 6566 -1 1 1795 34 42 0 0 chr3 158627735 158627783 -972000 + AT_rich Low_complexity Low_complexity 1 48 0 1 1795 189 147 0 0 chr3 158627899 158627933 -971850 + (TTC)n Simple_repeat Simple_repeat 1 34 0 1 1795 2079 295 78 12 chr3 158627993 158628683 -971100 - Lx8 LINE L1 -83 7390 6655 1 1795 5045 215 88 48 chr3 158628684 158629164 -970619 + RMER12 LTR ERVK 1 480 -842 1 1795 1131 82 0 7 chr3 158629164 158629311 -970472 - B1_Mus1 SINE Alu -1 147 2 1 1795 5045 215 88 48 chr3 158629311 158629550 -970233 + RMER12 LTR ERVK 481 767 -555 1 1795 399 41 0 0 chr3 158629550 158629599 -970184 + (TCCA)n Simple_repeat Simple_repeat 1 49 0 1 1795 5045 215 88 48 chr3 158629599 158630148 -969635 + RMER12 LTR ERVK 768 1320 -2 1 1795 1087 328 113 18 chr3 158630149 158630717 -969066 - Lx8 LINE L1 -814 6659 6038 1 1795 367 316 98 29 chr3 158630813 158630986 -968797 - MLT1A0 LTR MaLR -4 361 177 1 1795 441 0 0 0 chr3 158631404 158631453 -968330 + (TTA)n Simple_repeat Simple_repeat 3 51 0 1 1795 4916 50 0 0 chr3 158631475 158632073 -967710 - L1_Mus1 LINE L1 0 6567 5970 1 1795 748 332 153 22 chr3 158632465 158632869 -966914 - MLT2B1 LTR ERVL -63 457 1 1 1795 541 278 124 50 chr3 158632889 158633090 -966693 + B3 SINE B2 1 216 0 1 1795 297 197 0 0 chr3 158633121 158633182 -966601 + (TA)n Simple_repeat Simple_repeat 1 61 0 1 1795 237 83 0 0 chr3 158633182 158633218 -966565 + (TG)n Simple_repeat Simple_repeat 1 36 0 1 1795 21 57 0 0 chr3 158633367 158633402 -966381 + AT_rich Low_complexity Low_complexity 1 35 0 1 1795 1021 267 50 79 chr3 158633410 158633830 -965953 + MTE2b LTR MaLR 1 379 0 1 1795 368 271 106 31 chr3 158633978 158634138 -965645 - ERVL-B4-int LTR ERVL -1801 3913 3742 1 1795 374 280 25 8 chr3 158635072 158635191 -964592 - RMER5 LTR ERV1 0 534 414 1 1795 1220 239 136 16 chr3 158635518 158635841 -963942 + ORR1D2 LTR MaLR 1 362 -8 1 1795 268 410 54 15 chr3 158636162 158636365 -963418 + MLT1E1 LTR MaLR 388 598 -56 1 1795 228 347 31 0 chr3 158636584 158636682 -963101 - MLT1I LTR MaLR -238 173 73 1 1795 252 291 111 69 chr3 158636750 158636894 -962889 - MLT1I-int LTR MaLR -25 1384 1235 1 1795 272 348 135 43 chr3 158637105 158637387 -962396 - MLT1I-int LTR MaLR -609 800 493 1 1795 255 79 0 0 chr3 158637538 158637576 -962207 + (CA)n Simple_repeat Simple_repeat 2 39 0 1 1795 186 71 0 0 chr3 158637651 158637679 -962104 + (TTTTG)n Simple_repeat Simple_repeat 1 28 0 1 1795 1208 61 0 0 chr3 158638073 158638220 -961563 + B1_Mm SINE Alu 1 147 0 1 1795 294 95 0 0 chr3 158638220 158638262 -961521 + (A)n Simple_repeat Simple_repeat 1 42 0 1 1795 406 274 32 0 chr3 158638263 158638358 -961425 - B1F SINE Alu -51 98 1 1 1795 583 294 74 75 chr3 158639106 158639504 -960279 + RMER20B LTR ERVK 219 602 -25 1 1795 35 24 0 0 chr3 158639892 158639934 -959849 + AT_rich Low_complexity Low_complexity 1 42 0 1 1795 7723 44 1 8 chr3 158639934 158640893 -958890 - L1Md_F2 LINE L1 -2 6580 5629 1 1795 11266 20 0 0 chr3 158640891 158642215 -957568 + L1_Mm LINE L1 3103 4426 -1457 1 1795 7118 142 53 24 chr3 158642210 158643594 -956189 - Lx2B LINE L1 -14 6986 5518 1 1795 3524 185 6 1 chr3 158643589 158644251 -955532 + Lx2B LINE L1 4833 5497 -380 1 1795 246 279 58 0 chr3 158646096 158646182 -953601 - MER53 DNA hAT -100 93 3 1 1795 2488 192 41 17 chr3 158646876 158647508 -952275 - Lx4B LINE L1 -3 6973 6312 1 1795 189 0 0 0 chr3 158647930 158647951 -951832 + (CA)n Simple_repeat Simple_repeat 2 22 0 1 1795 228 111 0 0 chr3 158649222 158649258 -950525 + (T)n Simple_repeat Simple_repeat 1 36 0 1 1795 340 307 101 30 chr3 158649595 158649793 -949990 - L1MEc LINE L1 -3985 2430 2219 1 1795 226 367 54 8 chr3 158650077 158650206 -949577 - B1F SINE Alu -2 147 13 1 1795 345 179 11 56 chr3 158650572 158650661 -949122 - L1MC1 LINE L1 0 6333 6249 1 1795 408 71 0 0 chr3 158650681 158650737 -949046 + (CA)n Simple_repeat Simple_repeat 2 57 0 1 1795 35294 37 0 0 chr3 158650834 158656283 -943500 + L1Md_T LINE L1 43 5589 -297 1 1795 8973 6 0 0 chr3 158656283 158657279 -942504 + L1Md_T LINE L1 5590 6585 0 1 1795 487 307 21 34 chr3 158657283 158657522 -942261 - L1MC1 LINE L1 -257 6076 5841 1 1795 4946 132 29 10 chr3 158657583 158658391 -941392 - Lx3A LINE L1 -11 6970 6148 1 1795 445 122 49 0 chr3 158658391 158658473 -941310 + Lx3_Mus LINE L1 6073 6158 -851 1 1795 7598 44 1 0 chr3 158658487 158659402 -940381 + L1_Mus2 LINE L1 5649 6564 -2 1 1795 3378 212 83 59 chr3 158659437 158660371 -939412 - RMER17B LTR ERVK -1 957 1 1 1795 585 290 63 70 chr3 158660371 158660546 -939237 - L1MC1 LINE L1 -547 5786 5612 1 1795 1040 101 0 0 chr3 158660546 158660684 -939099 + B1_Mus1 SINE Alu 2 139 -9 1 1795 261 57 0 0 chr3 158660684 158660719 -939064 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 2 1795 585 290 63 70 chr3 158660719 158660842 -938941 - L1MC1 LINE L1 -722 5611 5490 1 1795 14209 100 9 3 chr3 158660969 158663932 -935851 + L1VL4 LINE L1 21 3002 -557 2 1795 267 103 0 0 chr3 158663943 158663982 -935801 + (T)n Simple_repeat Simple_repeat 1 39 0 2 1795 442 296 122 12 chr3 158664095 158664523 -935260 - L1MEc LINE L1 -5164 1236 762 1 1795 549 125 0 0 chr3 158666114 158666202 -933581 + (GA)n Simple_repeat Simple_repeat 1 88 0 2 1795 279 336 35 63 chr3 158666398 158666541 -933242 + MER76 LTR ERVL 11 149 -542 2 1795 1621 33 19 14 chr3 158666604 158666818 -932965 - L1Md_F3 LINE L1 -3 6581 6367 2 1795 525 258 53 8 chr3 158667999 158668240 -931543 - MER44A DNA MER2_type -72 267 11 2 1795 757 305 63 20 chr3 158668431 158668685 -931098 + B4A SINE B4 5 269 -23 2 1795 557 0 0 29 chr3 158668723 158668793 -930990 + (CATATA)n Simple_repeat Simple_repeat 2 69 0 2 1795 250 143 38 25 chr3 158668912 158668991 -930792 + (TA)n Simple_repeat Simple_repeat 1 80 0 2 1795 21 36 0 0 chr3 158669308 158669336 -930447 + AT_rich Low_complexity Low_complexity 1 28 0 2 1795 358 319 123 9 chr3 158669505 158669619 -930164 + ID_B1 SINE B4 88 214 -10 2 1795 739 277 92 38 chr3 158670563 158670878 -928905 + MTE-int LTR MaLR 1239 1570 -10 2 1795 726 236 14 0 chr3 158671922 158672070 -927713 - Lx5 LINE L1 -122 6928 6779 2 1795 232 328 62 0 chr3 158672071 158672135 -927648 - B4A SINE B4 -222 70 3 2 1795 525 155 0 0 chr3 158672470 158672554 -927229 + B1_Mur4 SINE Alu 67 150 0 2 1795 220 324 102 0 chr3 158673758 158673866 -925917 + MIRm SINE MIR 27 145 -131 2 1795 243 232 183 0 chr3 158674168 158674249 -925534 + MER31B LTR ERV1 34 129 -337 2 1795 237 308 31 62 chr3 158674249 158674346 -925437 + MLT1A1 LTR MaLR 1 94 -314 2 1795 6358 179 7 68 chr3 158674882 158675260 -924523 - L1VL4 LINE L1 -3290 2596 2310 2 1795 4198 80 0 0 chr3 158675260 158675813 -923970 - L1Md_T LINE L1 0 6582 6030 2 1795 6358 178 9 50 chr3 158675813 158677304 -922479 - L1VL4 LINE L1 -3577 2309 820 2 1795 266 274 123 0 chr3 158678192 158678265 -921518 + ID SINE ID 2 83 -141 2 1795 27 29 0 0 chr3 158678317 158678351 -921432 + AT_rich Low_complexity Low_complexity 1 34 0 2 1795 196 222 0 0 chr3 158678946 158678991 -920792 + MIRc SINE MIR 209 253 -15 2 1795 313 218 26 60 chr3 158680597 158680748 -919035 + (TATATG)n Simple_repeat Simple_repeat 4 149 0 2 1795 207 0 0 0 chr3 158680852 158680875 -918908 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 2 1795 856 232 36 10 chr3 158680942 158681134 -918649 - B3 SINE B2 -19 197 1 2 1795 653 255 69 105 chr3 158681210 158681486 -918297 + B4A SINE B4 27 292 0 2 1795 426 137 10 21 chr3 158682245 158682342 -917441 + (TA)n Simple_repeat Simple_repeat 2 97 0 2 1795 4377 71 0 12 chr3 158682662 158683233 -916550 + L1_Mus1 LINE L1 6003 6566 -1 2 1795 951 78 0 0 chr3 158683239 158683368 -916415 + (GAAAA)n Simple_repeat Simple_repeat 2 130 0 2 1795 1844 135 13 20 chr3 158684237 158684539 -915244 + Lx LINE L1 6310 6609 -45 2 1795 180 0 0 0 chr3 158684554 158684574 -915209 + (CAA)n Simple_repeat Simple_repeat 2 21 0 2 1795 315 353 117 27 chr3 158684579 158684879 -914904 - MLT1A LTR MaLR -47 327 1 2 1795 229 298 74 37 chr3 158684879 158684971 -914812 + MER20B DNA MER1_type 681 776 -7 2 1795 380 402 85 41 chr3 158685190 158685570 -914213 + LTR16C LTR ERVL 89 538 0 2 1795 1834 118 62 7 chr3 158686656 158686962 -912821 - Lx2A1 LINE L1 0 7008 6686 2 1795 5527 109 68 25 chr3 158686968 158687933 -911850 - Lx2A1 LINE L1 -503 6505 5496 2 1795 1727 212 82 5 chr3 158688040 158688429 -911354 + MTC LTR MaLR 3 421 0 2 1795 600 338 111 31 chr3 158689888 158690145 -909638 + B4A SINE B4 5 285 -7 2 1795 23 68 0 0 chr3 158690208 158690252 -909531 + AT_rich Low_complexity Low_complexity 1 44 0 2 1795 539 96 0 12 chr3 158691004 158691088 -908695 + (TC)n Simple_repeat Simple_repeat 2 84 0 2 1795 563 310 64 70 chr3 158691117 158691423 -908360 - B4 SINE B4 0 292 2 2 1795 367 357 6 31 chr3 158694216 158694378 -905405 + CT-rich Low_complexity Low_complexity 4 161 0 2 1795 252 275 12 48 chr3 158695294 158695378 -904405 + PB1 SINE Alu 47 127 0 2 1795 244 149 0 39 chr3 158695378 158695455 -904328 + (CAAA)n Simple_repeat Simple_repeat 3 76 0 2 1795 21 0 0 0 chr3 158695601 158695622 -904161 + AT_rich Low_complexity Low_complexity 1 21 0 2 1795 315 308 103 0 chr3 158695912 158696019 -903764 - ID_B1 SINE B4 -16 208 91 2 1795 204 62 62 0 chr3 158696074 158696106 -903677 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 2 1795 197 128 0 21 chr3 158696554 158696602 -903181 + (ATG)n Simple_repeat Simple_repeat 2 48 0 2 1795 243 370 36 15 chr3 158696664 158696801 -902982 - MIR SINE MIR -122 140 1 2 1795 516 279 76 35 chr3 158696964 158697135 -902648 + MER58A DNA MER1_type 46 223 -1 2 1795 1053 170 78 0 chr3 158698166 158698384 -901399 + Lx5 LINE L1 6811 7045 -5 2 1795 6313 216 45 41 chr3 158698392 158698540 -901243 - Lx5 LINE L1 -3 7047 6905 2 1795 194 45 91 0 chr3 158698540 158698584 -901199 + (CA)n Simple_repeat Simple_repeat 1 48 0 2 1795 13244 204 45 41 chr3 158698584 158699897 -899886 - Lx5 LINE L1 -146 6904 5576 2 1795 4306 8 0 8 chr3 158699897 158700383 -899400 + LTRIS_Mm LTR ERV1 1 482 0 2 1795 13244 166 46 41 chr3 158700383 158702719 -897064 - Lx5 LINE L1 -302 5575 3226 2 1795 447 19 0 0 chr3 158702719 158702771 -897012 + (TC)n Simple_repeat Simple_repeat 2 53 0 2 1795 13244 166 46 41 chr3 158702771 158702826 -896957 - Lx5 LINE L1 -2652 3225 3171 2 1795 2660 178 32 8 chr3 158702837 158703364 -896419 - Lx5 LINE L1 -3276 2601 2062 2 1795 204 97 0 0 chr3 158703372 158703403 -896380 + (TG)n Simple_repeat Simple_repeat 1 31 0 2 1795 356 265 41 0 chr3 158703475 158703573 -896210 - BC1_Mm scRNA scRNA -45 107 6 2 1795 196 320 0 0 chr3 158703908 158703958 -895825 - MIRb SINE MIR -28 240 191 2 1795 4111 146 15 6 chr3 158704268 158704945 -894838 - L1_Mus4 LINE L1 -3 6633 5951 2 1795 193 140 17 17 chr3 158705429 158705487 -894296 + A-rich Low_complexity Low_complexity 3 60 0 2 1795 1049 131 11 32 chr3 158705654 158705843 -893940 - RMER17C LTR ERVK 0 410 226 2 1795 253 309 140 18 chr3 158706221 158706392 -893391 - MIRb SINE MIR -17 251 60 2 1795 501 304 83 12 chr3 158707622 158707862 -891921 + RMER5 LTR ERV1 278 534 0 2 1795 244 256 11 44 chr3 158708163 158708253 -891530 - MLT1A1 LTR MaLR -4 404 318 2 1795 3518 35 28 9 chr3 158708596 158709024 -890759 + RLTR10C LTR ERVK 1 436 0 2 1795 202 348 42 25 chr3 158709672 158709790 -889993 - L2 LINE L2 -1417 2002 1883 2 1795 893 223 134 3 chr3 158710039 158710322 -889461 - Lx9 LINE L1 0 7644 7325 2 1795 192 304 54 11 chr3 158710647 158710740 -889043 - MIRb SINE MIR -40 228 132 2 1795 296 358 23 85 chr3 158711581 158711886 -887897 + B4A SINE B4 5 290 -2 2 1795 22 0 0 0 chr3 158711886 158711908 -887875 + AT_rich Low_complexity Low_complexity 1 22 0 2 1795 364 218 57 11 chr3 158712853 158712941 -886842 + MER34A LTR ERV1 8 99 -472 2 1795 255 172 31 15 chr3 158712958 158713023 -886760 + MER57A-int LTR ERV1 1100 1165 -5022 2 1795 262 284 75 33 chr3 158713165 158713285 -886498 + MER34A LTR ERV1 384 508 -79 2 1795 3050 73 13 0 chr3 158713431 158713826 -885957 - MTB LTR MaLR 0 400 1 2 1795 519 45 0 0 chr3 158716063 158716129 -883654 + (TG)n Simple_repeat Simple_repeat 2 67 0 2 1795 341 287 120 0 chr3 158716155 158716263 -883520 - RSINE1 SINE B4 -41 124 4 2 1795 326 226 13 6 chr3 158716638 158716730 -883053 + L1MA4A LINE L1 5739 5896 -407 2 1795 543 78 0 0 chr3 158717324 158717401 -882382 + (CA)n Simple_repeat Simple_repeat 2 78 0 2 1795 24 96 0 0 chr3 158717526 158717599 -882184 + AT_rich Low_complexity Low_complexity 1 73 0 2 1795 468 0 0 0 chr3 158717709 158717761 -882022 + (TA)n Simple_repeat Simple_repeat 2 53 0 2 1795 26 0 0 0 chr3 158717862 158717888 -881895 + AT_rich Low_complexity Low_complexity 1 26 0 2 1795 21 0 0 0 chr3 158718621 158718642 -881141 + AT_rich Low_complexity Low_complexity 1 21 0 2 1795 240 184 0 39 chr3 158718810 158718861 -880922 + T-rich Low_complexity Low_complexity 1 49 0 2 1795 429 20 0 0 chr3 158718918 158718968 -880815 + (TG)n Simple_repeat Simple_repeat 2 51 0 2 1795 189 154 0 0 chr3 158720839 158720878 -878905 + (CATA)n Simple_repeat Simple_repeat 3 41 0 2 1795 313 272 0 80 chr3 158720881 158720981 -878802 - L1MA4 LINE L1 -374 5926 5835 2 1795 993 64 0 0 chr3 158721408 158721533 -878250 - L1_Mm LINE L1 -325 5558 5434 2 1795 5619 39 0 3 chr3 158721533 158722205 -877578 + L1Md_F2 LINE L1 5894 6563 -19 2 1795 23 0 0 0 chr3 158722339 158722362 -877421 + AT_rich Low_complexity Low_complexity 1 23 0 2 1795 2886 38 6 0 chr3 158722591 158722935 -876848 - ORR1A0 LTR MaLR 0 346 1 2 1795 717 131 11 11 chr3 158722996 158723173 -876610 + (TCTA)n Simple_repeat Simple_repeat 3 179 0 2 1795 409 215 112 97 chr3 158723224 158723358 -876425 - MTEa LTR MaLR -2 377 242 2 1795 12717 47 2 1 chr3 158723360 158724948 -874835 + L1Md_F3 LINE L1 3998 5586 -297 2 1795 7906 38 20 2 chr3 158724948 158725928 -873855 + L1Md_F3 LINE L1 5587 6584 0 2 1795 644 296 47 55 chr3 158725930 158726184 -873599 - MTEa LTR MaLR -125 254 3 2 1795 937 107 7 35 chr3 158726198 158726343 -873440 + B1_Mus1 SINE Alu 2 142 -6 2 1795 249 33 0 0 chr3 158726348 158726378 -873405 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 2 1795 453 160 0 54 chr3 158726435 158726547 -873236 - L1Md_F3 LINE L1 -4 6580 6475 2 1795 882 142 6 12 chr3 158727186 158727357 -872426 + Lx4A LINE L1 6888 7057 -1 2 224 6953 122 81 9 chr3 158727667 158728829 -870954 - L1_Mur2 LINE L1 -328 5549 4305 2 1796 5295 178 45 11 chr3 158728856 158729864 -869919 + Lx4A LINE L1 6017 7058 0 2 1796 651 48 0 0 chr3 158729895 158729978 -869805 + (GA)n Simple_repeat Simple_repeat 2 84 0 2 1796 547 262 98 33 chr3 158730457 158730767 -869016 + ORR1D2 LTR MaLR 1 370 0 3 1796 860 174 269 45 chr3 158731260 158731422 -868361 - ORR1C2 LTR MaLR -2 382 171 3 1796 405 0 0 0 chr3 158731422 158731467 -868316 + (GA)n Simple_repeat Simple_repeat 1 45 0 3 1796 860 174 269 45 chr3 158731467 158731616 -868167 - ORR1C2 LTR MaLR -214 170 1 3 1796 1812 188 25 58 chr3 158731888 158732290 -867493 + ORR1B1 LTR MaLR 3 386 -8 3 1796 382 202 0 71 chr3 158732642 158732727 -867056 - ID_B1 SINE B4 0 224 146 3 1796 1092 196 134 168 chr3 158733158 158733545 -866238 + ORR1D1 LTR MaLR 1 374 0 3 1796 307 303 38 49 chr3 158734033 158734161 -865622 + L1M5 LINE L1 4016 4144 -2002 3 1796 5486 113 29 6 chr3 158734161 158734988 -864795 + Lx3C LINE L1 6130 6975 -1 3 1796 307 303 38 49 chr3 158734988 158735043 -864740 + L1M5 LINE L1 4145 4197 -1949 3 1796 523 331 136 40 chr3 158735058 158735281 -864502 + L1MD LINE L1 4146 4382 -1764 3 1796 1616 32 0 0 chr3 158735281 158735467 -864316 + B2_Mm1t SINE B2 1 186 -7 3 1796 523 331 136 40 chr3 158735467 158735547 -864236 + L1MD LINE L1 4383 4467 -1679 3 1796 396 0 0 0 chr3 158735547 158735591 -864192 + (CA)n Simple_repeat Simple_repeat 2 45 0 3 1796 523 331 136 40 chr3 158735591 158735987 -863796 + L1MD LINE L1 4468 4912 -1234 3 1796 256 266 64 78 chr3 158736001 158736205 -863578 + L1M5 LINE L1 2337 2537 -3609 3 1796 692 272 65 22 chr3 158736263 158736447 -863336 - B3 SINE B2 0 216 25 3 1796 417 297 63 31 chr3 158736499 158736753 -863030 + L1M5 LINE L1 2691 2952 -3194 3 1796 241 351 27 0 chr3 158736829 158736903 -862880 + B1F SINE Alu 22 97 -52 3 1796 359 331 109 62 chr3 158736999 158737531 -862252 + L1M5 LINE L1 3028 3584 -2562 3 1796 3717 36 0 0 chr3 158737606 158738048 -861735 - L1Md_T LINE L1 0 6582 6141 3 1796 372 323 88 67 chr3 158738173 158738561 -861222 - Charlie1 DNA MER1_type -139 2642 2247 3 1796 472 320 91 19 chr3 158738605 158738815 -860968 - Charlie1 DNA MER1_type -1003 1778 1554 3 1796 312 335 211 0 chr3 158738939 158739148 -860635 - Charlie1 DNA MER1_type -2527 254 2 3 1796 477 162 30 0 chr3 158740043 158740142 -859641 - L1_Mur2 LINE L1 -2796 3081 2980 3 1796 189 74 0 0 chr3 158740142 158740169 -859614 + (TG)n Simple_repeat Simple_repeat 2 28 0 3 1796 666 132 0 0 chr3 158741806 158741942 -857841 + (TC)n Simple_repeat Simple_repeat 1 136 0 3 1796 298 366 16 31 chr3 158742566 158742693 -857090 + LTR16A LTR ERVL 223 347 -104 3 1796 1068 180 52 79 chr3 158743432 158743789 -855994 + RLTRETN_Mm LTR ERVK 6 409 0 3 1796 616 185 7 22 chr3 158743844 158743982 -855801 - Lx7 LINE L1 0 7696 7561 3 1796 289 0 0 0 chr3 158743985 158744017 -855766 - L1Md_F3 LINE L1 -208 6376 6345 3 1796 1511 58 0 0 chr3 158744017 158744208 -855575 + L1Md_T LINE L1 6391 6581 -1 3 1796 425 333 11 7 chr3 158744295 158744551 -855232 + L1M3 LINE L1 5524 5787 -504 3 1796 289 148 9 56 chr3 158744563 158744670 -855113 - Lx7 LINE L1 -122 7574 7473 3 1796 2515 227 27 91 chr3 158744709 158745447 -854336 - Lx7 LINE L1 -203 7493 6803 3 1796 327 288 0 0 chr3 158745442 158745522 -854261 - L1_Mur3 LINE L1 -7410 302 223 3 1796 276 30 0 0 chr3 158745568 158745601 -854182 + (TG)n Simple_repeat Simple_repeat 1 33 0 3 1796 626 25 12 0 chr3 158745601 158745680 -854103 + (GA)n Simple_repeat Simple_repeat 1 81 0 3 1796 433 343 54 27 chr3 158745680 158745815 -853968 - RSINE1 SINE B4 -8 157 16 3 1796 1972 243 38 34 chr3 158746513 158746818 -852965 + RMER5 LTR ERV1 13 316 -218 3 1796 1911 199 68 13 chr3 158746818 158746868 -852915 + MTC LTR MaLR 1 53 -368 3 1796 1060 50 7 34 chr3 158746868 158747014 -852769 + B1_Mm SINE Alu 5 146 -1 3 1796 1911 199 68 13 chr3 158747014 158747360 -852423 + MTC LTR MaLR 54 418 -3 3 1796 1972 243 38 34 chr3 158747360 158747557 -852226 + RMER5 LTR ERV1 317 517 -17 3 1796 22 80 0 0 chr3 158748206 158748256 -851527 + AT_rich Low_complexity Low_complexity 1 50 0 3 1796 36 0 0 0 chr3 158748266 158748302 -851481 + AT_rich Low_complexity Low_complexity 1 36 0 3 1796 1029 70 7 14 chr3 158748302 158748446 -851337 - B1_Mm SINE Alu 0 147 5 3 1796 785 113 14 40 chr3 158748451 158748599 -851184 - L1_Mus3 LINE L1 -26 6612 6469 3 1796 456 326 54 8 chr3 158748620 158748750 -851033 + B4A SINE B4 4 139 -153 3 1796 237 311 46 14 chr3 158748961 158749199 -850584 + L1M4 LINE L1 5236 5482 -697 3 1796 286 288 118 8 chr3 158749881 158750000 -849783 + MLT1E3 LTR MaLR 5 136 -488 3 1796 266 343 123 27 chr3 158750122 158750341 -849442 + MLT1E3 LTR MaLR 306 545 -79 3 1796 4425 153 52 2 chr3 158751308 158752095 -847688 - Lx2 LINE L1 -70 6927 6102 3 1796 405 0 0 0 chr3 158752429 158752474 -847309 + (TG)n Simple_repeat Simple_repeat 2 46 0 3 1796 920 319 38 35 chr3 158752474 158752900 -846883 - Lx9 LINE L1 -186 7458 7032 3 1796 207 283 38 0 chr3 158752981 158753034 -846749 - MIR SINE MIR -84 178 124 3 1796 429 339 39 11 chr3 158753417 158753596 -846187 - MER5A DNA MER1_type -5 184 1 3 1796 963 55 43 0 chr3 158754009 158754172 -845611 + (TAGA)n Simple_repeat Simple_repeat 1 170 0 3 1796 181 272 95 36 chr3 158754579 158754663 -845120 + L2 LINE L2 571 659 -2760 3 1796 195 278 21 62 chr3 158756240 158756336 -843447 + MIRc SINE MIR 114 205 -63 3 1796 598 287 98 105 chr3 158756806 158757164 -842619 - RLTR18 LTR ERVK 0 616 123 3 1796 388 265 82 41 chr3 158757159 158757281 -842502 - RLTR18B LTR ERVK -312 200 74 3 1796 191 36 36 0 chr3 158757567 158757595 -842188 + (CAA)n Simple_repeat Simple_repeat 2 30 0 3 1796 187 273 36 116 chr3 158758212 158758324 -841459 + MER5A DNA MER1_type 38 140 -49 3 1796 727 348 56 39 chr3 158758787 158759146 -840637 + MLT1A0 LTR MaLR 1 365 0 3 1796 330 287 41 41 chr3 158759782 158759880 -839903 + B4 SINE B4 1 98 -194 3 1796 224 260 10 30 chr3 158759927 158760026 -839757 + (CATA)n Simple_repeat Simple_repeat 4 100 0 3 1796 559 340 0 0 chr3 158761021 158761165 -838618 - B1F SINE Alu -5 144 1 3 1796 621 22 44 0 chr3 158762074 158762164 -837619 + (TCTA)n Simple_repeat Simple_repeat 3 96 0 3 1796 228 35 0 0 chr3 158762164 158762193 -837590 + (CAT)n Simple_repeat Simple_repeat 2 30 0 3 1796 278 135 62 23 chr3 158762194 158762323 -837460 + (TCTA)n Simple_repeat Simple_repeat 1 134 0 3 1796 315 219 51 45 chr3 158762390 158762567 -837216 + (TCTA)n Simple_repeat Simple_repeat 1 178 0 3 1796 327 104 0 0 chr3 158762858 158762906 -836877 + (TA)n Simple_repeat Simple_repeat 2 49 0 3 1796 1109 90 0 0 chr3 158763067 158763212 -836571 + B1_Mus2 SINE Alu 1 145 -2 3 1796 392 29 57 14 chr3 158763215 158763285 -836498 + (TAAA)n Simple_repeat Simple_repeat 2 74 0 3 1796 22 35 0 0 chr3 158763441 158763470 -836313 + AT_rich Low_complexity Low_complexity 1 29 0 3 1796 2100 230 23 150 chr3 158763759 158764492 -835291 + L1VL2 LINE L1 66 705 -5630 3 1796 2225 226 33 16 chr3 158764492 158765041 -834742 + RLTR31_Mm LTR ERVK 1 559 -2 3 1796 8288 132 56 21 chr3 158765045 158767164 -832619 + L1VL4 LINE L1 1002 3346 -2540 3 1796 664 136 0 0 chr3 158767157 158767267 -832516 + Lx LINE L1 3903 4012 -1871 3 1796 6500 171 51 8 chr3 158767250 158767963 -831820 + Lx LINE L1 4535 5296 -587 3 1796 912 142 7 0 chr3 158767963 158768104 -831679 + B1_Mus1 SINE Alu 1 142 -6 3 1796 6820 130 30 13 chr3 158768104 158769452 -830331 + Lx LINE L1 5297 6654 0 3 1796 33902 87 14 3 chr3 158770510 158776753 -823030 - L1Md_F2 LINE L1 0 6582 311 3 1796 225 0 0 0 chr3 158777429 158777454 -822329 + (TTTA)n Simple_repeat Simple_repeat 4 28 0 3 1796 475 274 151 0 chr3 158777470 158777616 -822167 - B3 SINE B2 -31 185 18 3 1796 389 216 35 43 chr3 158778343 158778459 -821324 + MTEb LTR MaLR 265 379 0 3 1796 654 187 188 54 chr3 158778563 158778840 -820943 - Lx7 LINE L1 0 7696 7383 3 1796 498 96 0 0 chr3 158778885 158778958 -820825 + (TCTA)n Simple_repeat Simple_repeat 2 74 0 3 1796 740 335 0 33 chr3 158778968 158779096 -820687 - ID_B1 SINE B4 -14 210 83 3 1796 2015 149 12 3 chr3 158779096 158779420 -820363 + ORR1A2 LTR MaLR 1 327 0 3 1796 740 335 0 33 chr3 158779420 158779504 -820279 - ID SINE ID -142 82 5 3 1796 3416 164 17 6 chr3 158780101 158780735 -819048 - Lx LINE L1 -357 5526 4886 3 1796 6702 104 40 13 chr3 158780733 158781822 -817961 + Lx LINE L1 5531 6649 -5 3 1796 223 299 13 13 chr3 158781895 158781973 -817810 + MIR SINE MIR 90 167 -95 3 1796 22 0 0 0 chr3 158782024 158782046 -817737 + AT_rich Low_complexity Low_complexity 1 22 0 3 1796 200 341 131 46 chr3 158782077 158782252 -817531 - L2b LINE L2 0 3375 3186 3 1796 1975 69 31 0 chr3 158783064 158783324 -816459 - L1_Mus1 LINE L1 0 6567 6300 3 1796 1339 76 0 0 chr3 158783324 158783496 -816287 + L1_Mus1 LINE L1 6145 6316 -250 3 1796 357 284 226 52 chr3 158783550 158783855 -815928 + MLT1A1 LTR MaLR 7 364 -44 3 1796 31 0 0 0 chr3 158786509 158786540 -813243 + AT_rich Low_complexity Low_complexity 1 31 0 3 1796 273 371 45 40 chr3 158788211 158788413 -811370 + Charlie7 DNA MER1_type 431 633 -1979 3 1796 483 224 45 26 chr3 158788649 158788805 -810978 + Lx5 LINE L1 6064 6222 -828 3 1796 2853 18 3 0 chr3 158788809 158789146 -810637 - ORR1A0 LTR MaLR -8 338 1 3 1796 3999 201 36 12 chr3 158789146 158789953 -809830 + Lx5 LINE L1 6218 7043 -7 3 1796 186 43 0 0 chr3 158790008 158790031 -809752 + (CAT)n Simple_repeat Simple_repeat 2 24 0 3 1796 253 250 0 111 chr3 158790526 158790598 -809185 - B1_Mus2 SINE Alu -83 64 1 3 1796 478 294 7 7 chr3 158790598 158790675 -809108 - ID SINE ID -144 80 4 3 1796 633 282 129 0 chr3 158790677 158790957 -808826 - L1MC4 LINE L1 -503 7539 7224 3 1796 21 36 0 0 chr3 158792023 158792051 -807732 + AT_rich Low_complexity Low_complexity 1 28 0 3 1796 228 275 220 21 chr3 158792332 158792473 -807310 - L2a LINE L2 -8 3418 3250 3 1796 5796 35 0 0 chr3 158793740 158794427 -805356 - L1Md_T LINE L1 0 6582 5896 3 1796 426 312 84 27 chr3 158794433 158794710 -805073 + MLT1A1 LTR MaLR 39 408 0 3 1796 349 337 85 47 chr3 158794780 158794992 -804791 - MIRb SINE MIR -48 220 1 3 1796 533 15 15 0 chr3 158795216 158795282 -804501 + (CA)n Simple_repeat Simple_repeat 2 68 0 3 1796 307 252 163 42 chr3 158795741 158795907 -803876 - MLT1A0 LTR MaLR 0 390 205 3 1796 188 24 23 68 chr3 158796262 158796306 -803477 + (TTA)n Simple_repeat Simple_repeat 1 42 0 3 1796 405 86 0 14 chr3 158796306 158796377 -803406 - Lx2A LINE L1 -15 6993 6924 3 1796 1095 138 20 5 chr3 158796377 158796581 -803202 - Lx2A LINE L1 -40 6968 6762 4 1796 273 272 19 37 chr3 158796736 158796843 -802940 + MTEb LTR MaLR 275 379 0 4 1796 343 283 58 0 chr3 158796852 158796972 -802811 - MLT-int LTR MaLR -213 1522 1396 4 1796 247 253 66 13 chr3 158797010 158797086 -802697 - MLT1A0 LTR MaLR -328 80 1 3 1796 653 137 8 0 chr3 158797188 158797305 -802478 + (GA)n Simple_repeat Simple_repeat 2 119 0 4 1796 190 204 93 0 chr3 158798379 158798433 -801350 - L3 LINE CR1 -4334 155 97 4 1796 4366 160 11 4 chr3 158798464 158798690 -801093 - Lx3B LINE L1 -645 6328 6100 4 1796 186 43 0 0 chr3 158798690 158798713 -801070 + (CCCCCA)n Simple_repeat Simple_repeat 2 24 0 4 1796 4366 184 34 3 chr3 158798713 158799678 -800105 - Lx3B LINE L1 -874 6099 5096 4 1796 246 32 0 0 chr3 158799684 158799715 -800068 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 4 1796 377 159 398 0 chr3 158799716 158799804 -799979 - L1_Mur1 LINE L1 -438 5448 5326 4 1796 5839 108 9 0 chr3 158799803 158800671 -799112 + L1_Mm LINE L1 3552 4427 -1456 4 1796 3743 56 19 0 chr3 158800668 158801133 -798650 + L1Md_F2 LINE L1 5877 6350 -232 4 1796 4272 86 2 2 chr3 158801159 158801744 -798039 + L1_Mm LINE L1 4291 4875 -1008 4 1796 1097 63 0 0 chr3 158801757 158801899 -797884 - B1_Mus1 SINE Alu 0 148 7 4 1796 838 75 8 0 chr3 158801916 158802036 -797747 + L1_Mm LINE L1 4991 5111 -772 4 1796 957 328 82 40 chr3 158802037 158802415 -797368 - Lx6 LINE L1 -150 7310 6917 4 1796 12751 113 12 9 chr3 158802639 158805581 -794202 - L1_Mus1 LINE L1 -4 6969 4052 4 1796 1117 232 28 34 chr3 158805574 158805926 -793857 - L1_Mur2 LINE L1 -5896 816 467 4 1796 218 203 57 14 chr3 158807253 158807323 -792460 + T-rich Low_complexity Low_complexity 2 74 0 4 1796 235 279 0 0 chr3 158807356 158807399 -792384 - PB1D9 SINE Alu -77 43 1 4 1796 454 261 230 24 chr3 158808426 158808738 -791045 + RMER20B LTR ERVK 134 501 -126 4 1796 545 330 124 40 chr3 158809053 158809375 -790408 - MLT1A0 LTR MaLR -24 350 2 4 1796 180 380 127 11 chr3 158811128 158811317 -788466 - MIR SINE MIR -40 222 12 4 1796 477 0 0 0 chr3 158811893 158811946 -787837 + (TA)n Simple_repeat Simple_repeat 2 54 0 4 1796 459 0 0 0 chr3 158811946 158811996 -787787 + (TG)n Simple_repeat Simple_repeat 2 52 0 4 1796 1024 244 116 4 chr3 158814351 158814602 -785181 + MTC LTR MaLR 91 369 -52 4 1796 10511 114 30 15 chr3 158815244 158816444 -783339 - Lx3A LINE L1 -3 6978 5754 4 1796 813 89 137 0 chr3 158816444 158816568 -783215 - B1_Mus1 SINE Alu -5 143 3 4 1796 10511 101 5 14 chr3 158816568 158817968 -781815 - Lx3A LINE L1 -130 5756 4353 4 1796 6347 99 4 114 chr3 158817961 158818659 -781124 + Lx3A LINE L1 3272 3936 -1950 4 1796 637 49 0 0 chr3 158818659 158818740 -781043 + B1_Mus2 SINE Alu 67 147 0 4 1796 6347 99 4 114 chr3 158818740 158819174 -780609 + Lx3A LINE L1 3937 4351 -1535 4 1796 333 47 0 0 chr3 158819378 158819421 -780362 + (CA)n Simple_repeat Simple_repeat 2 44 0 4 1796 576 0 0 0 chr3 158819813 158819877 -779906 + (GAAA)n Simple_repeat Simple_repeat 3 66 0 4 1796 189 175 0 0 chr3 158821111 158821151 -778632 + (CA)n Simple_repeat Simple_repeat 2 41 0 4 1796 531 0 0 0 chr3 158821151 158821210 -778573 + (GA)n Simple_repeat Simple_repeat 2 60 0 4 1796 729 34 0 0 chr3 158821313 158821401 -778382 + (TTCC)n Simple_repeat Simple_repeat 4 91 0 4 1796 206 75 0 48 chr3 158821619 158821661 -778122 + (CAAA)n Simple_repeat Simple_repeat 2 41 0 4 1796 283 239 82 10 chr3 158822020 158822152 -777631 + L1M5 LINE L1 4201 4341 -1805 4 1796 33253 75 15 2 chr3 158822166 158827617 -772166 - L1Md_F2 LINE L1 -14 6568 1045 4 1796 1833 296 116 15 chr3 158827876 158828672 -771111 + Lx7 LINE L1 5985 6860 -836 4 1796 39382 18 3 6 chr3 158828726 158835322 -764461 - L1Md_A LINE L1 0 6582 7 4 1796 847 316 50 5 chr3 158835320 158835699 -764084 + Lx7 LINE L1 6910 7305 -391 4 1796 21 57 0 0 chr3 158835979 158836014 -763769 + AT_rich Low_complexity Low_complexity 1 35 0 4 1796 34497 34 0 13 chr3 158836752 158841784 -757999 + L1Md_T LINE L1 631 5586 -297 4 1796 7906 38 33 0 chr3 158841784 158842677 -757106 + L1Md_T LINE L1 5587 6479 -103 4 1796 188 67 0 32 chr3 158842677 158842708 -757075 + (TGGG)n Simple_repeat Simple_repeat 4 33 0 4 1796 7906 38 33 0 chr3 158842708 158842778 -757005 + L1Md_T LINE L1 6480 6581 -1 4 1796 277 226 320 0 chr3 158842848 158842964 -756819 - MER58A DNA MER1_type -74 150 48 4 1796 3799 138 71 16 chr3 158843013 158843690 -756093 + Lx2B LINE L1 6279 6992 -8 4 1796 1119 289 50 32 chr3 158843936 158844058 -755725 - Lx8 LINE L1 -1 7472 7336 4 1796 360 0 0 0 chr3 158844058 158844098 -755685 + (TG)n Simple_repeat Simple_repeat 2 41 0 4 1796 1119 289 50 32 chr3 158844098 158844476 -755307 - Lx8 LINE L1 -138 7335 6963 4 1796 302 27 0 0 chr3 158845950 158845987 -753796 - ORR1D1 LTR MaLR 0 400 364 4 1796 5261 64 19 0 chr3 158845987 158846704 -753079 + MERVL-int LTR ERVL 2 732 -4753 4 1796 828 62 26 9 chr3 158846704 158846818 -752965 - MTA_Mm LTR MaLR -280 116 1 4 1796 6976 91 25 61 chr3 158846818 158847956 -751827 - MTA_Mm-int LTR MaLR 0 1098 1 4 1796 3083 73 2 2 chr3 158847956 158848352 -751431 - MTA_Mm LTR MaLR 0 396 1 4 1796 193 330 202 0 chr3 158848605 158848699 -751084 - MIR SINE MIR -112 150 38 4 1796 210 308 8 108 chr3 158849485 158849605 -750178 - L2 LINE L2 -574 2845 2738 4 1796 2152 143 0 13 chr3 158849788 158850163 -749620 - L1_Mm LINE L1 -676 5207 4838 4 1796 2671 164 4 0 chr3 158850160 158850636 -749147 + L1_Mm LINE L1 5206 5683 -200 4 1796 11030 58 8 3 chr3 158850652 158852805 -746978 - L1Md_F2 LINE L1 -2 6580 4418 4 1796 7315 57 9 5 chr3 158852805 158853751 -746032 + L1Md_F2 LINE L1 5619 6568 -14 4 1796 791 239 67 22 chr3 158853782 158854005 -745778 + Lx9 LINE L1 7002 7234 -410 4 1796 371 259 8 41 chr3 158854039 158854160 -745623 + RLTR14 LTR ERV1 3 119 -263 4 1796 443 262 104 107 chr3 158854146 158854454 -745329 + RLTR14 LTR ERV1 76 382 0 4 1796 1507 254 22 30 chr3 158854454 158854815 -744968 - ORR1D1 LTR MaLR -16 358 1 4 1796 1557 201 50 5 chr3 158854816 158855212 -744571 + Lx9 LINE L1 7230 7643 -1 4 1796 1158 172 27 13 chr3 158855368 158855592 -744191 + Lx3A LINE L1 6743 6969 -12 4 1796 556 22 43 22 chr3 158855591 158855683 -744100 + L1Md_F3 LINE L1 6491 6584 0 4 1796 556 344 73 42 chr3 158855733 158855843 -743940 - MLT1D LTR MaLR -91 414 309 4 1796 716 191 191 0 chr3 158855843 158856032 -743751 - URR1B DNA MER1_type 0 225 1 4 1796 556 344 73 42 chr3 158856032 158856209 -743574 - MLT1D LTR MaLR -197 308 118 4 1796 364 236 23 39 chr3 158857526 158857654 -742129 + CT-rich Low_complexity Low_complexity 2 127 0 4 1796 734 285 102 27 chr3 158857891 158858223 -741560 - Lx8 LINE L1 -99 7374 7018 4 1796 399 258 65 35 chr3 158858227 158858396 -741387 - Lx7 LINE L1 -5 7691 7518 4 1796 461 219 70 9 chr3 158858407 158858522 -741261 - Lx8 LINE L1 -456 7017 6896 4 224 2981 219 80 16 chr3 158858689 158859368 -740415 - ORR1D1-int LTR MaLR -648 722 1 4 1797 927 181 229 17 chr3 158859368 158859604 -740179 - ORR1D1 LTR MaLR 0 374 89 4 1797 905 215 79 138 chr3 158859604 158859922 -739861 + MT2A LTR ERVL 1 299 -234 4 1797 1388 66 16 0 chr3 158861512 158861695 -738088 - B2_Mm1a SINE B2 -7 186 1 4 1797 180 0 0 0 chr3 158862497 158862517 -737266 + (TA)n Simple_repeat Simple_repeat 2 21 0 4 1797 22014 93 10 56 chr3 158862777 158867424 -732359 + L1Md_F2 LINE L1 187 4620 -1263 4 1797 3049 77 29 2 chr3 158867425 158867531 -732252 + L1Md_F2 LINE L1 5129 5234 -649 4 1797 705 103 0 0 chr3 158867531 158867648 -732135 + (TA)n Simple_repeat Simple_repeat 1 117 0 4 1797 3049 77 29 2 chr3 158867648 158867985 -731798 + L1Md_F2 LINE L1 5235 5584 -299 4 1797 7049 83 21 7 chr3 158867987 158868967 -730816 + L1Md_F2 LINE L1 5587 6580 -2 4 1797 9081 90 13 1 chr3 158868968 158870313 -729470 + L1Md_F2 LINE L1 4217 5577 -306 4 1797 8257 41 0 0 chr3 158870317 158871293 -728490 + L1Md_F2 LINE L1 5588 6563 -19 4 1797 827 95 16 0 chr3 158871302 158871428 -728355 + (GAAA)n Simple_repeat Simple_repeat 3 130 0 4 1797 3476 124 7 0 chr3 158871428 158872008 -727775 - L1_Mm LINE L1 -1488 4395 3812 4 1797 7692 118 35 30 chr3 158872010 158873557 -726226 + L1_Mus2 LINE L1 4662 6285 -281 4 1797 3703 22 30 65 chr3 158873557 158874049 -725734 - IAPLTR2_Mm LTR ERVK 0 475 1 4 1797 5003 112 80 73 chr3 158874049 158874392 -725391 + L1_Mus2 LINE L1 6286 6564 -2 4 1797 1437 183 46 43 chr3 158874416 158874741 -725042 - RLTR22_Mur LTR ERVK -618 1230 905 4 1797 1615 142 15 0 chr3 158874825 158875093 -724690 - RLTR21 LTR ERVK -863 709 438 4 1797 651 226 8 0 chr3 158875086 158875210 -724573 - RLTR21 LTR ERVK -1446 126 2 4 1797 1231 83 59 27 chr3 158877092 158877278 -722505 + B2_Mm2 SINE B2 3 194 -1 4 1797 1079 274 122 15 chr3 158877433 158877841 -721942 + Lx6 LINE L1 6919 7370 -90 4 1797 588 99 0 0 chr3 158878105 158878196 -721587 + Lx LINE L1 5730 5820 -834 4 1797 11223 159 7 8 chr3 158878190 158880342 -719441 - L1VL4 LINE L1 -1371 4515 2368 4 1797 1613 128 22 4 chr3 158880342 158880609 -719174 - L1_Mus3 LINE L1 -6 6632 6361 4 1797 9195 187 29 98 chr3 158880609 158883314 -716469 - L1VL4 LINE L1 -3506 2374 356 4 1797 6232 108 13 8 chr3 158883312 158884293 -715490 + Lx LINE L1 5668 6653 -1 4 1797 1235 134 67 4 chr3 158884285 158884525 -715258 + L1_Mur1 LINE L1 3139 3393 -2493 4 1797 1884 219 16 6 chr3 158884525 158885034 -714749 - L1_Mur1 LINE L1 -3016 2870 2357 4 1797 25 75 0 0 chr3 158885102 158885155 -714628 + AT_rich Low_complexity Low_complexity 1 53 0 4 1797 11479 70 0 1 chr3 158885500 158887757 -712026 - L1Md_F2 LINE L1 -12 6570 4317 4 1797 247 318 29 29 chr3 158887931 158888067 -711716 - L1M2 LINE L1 -4390 2459 2324 4 1797 547 171 18 37 chr3 158888158 158888267 -711516 + RMER12 LTR ERVK 1216 1322 0 4 1797 189 0 0 0 chr3 158888386 158888407 -711376 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 4 1797 227 171 0 0 chr3 158888433 158888468 -711315 - RMER12 LTR ERVK -144 1178 1144 4 1797 599 292 26 122 chr3 158888565 158888869 -710914 - RMER12 LTR ERVK -83 1239 965 4 1797 2746 15 95 6 chr3 158888869 158889206 -710577 - IAPLTR1_Mm LTR ERVK 0 367 1 4 1797 27577 20 1 1 chr3 158889206 158892477 -707306 - IAPEz-int LTR ERVK 0 6481 3210 4 1797 6231 95 125 73 chr3 158892476 158893718 -706065 - IAPEz-int LTR ERVK -5168 1313 8 4 1797 2746 15 95 6 chr3 158893718 158894055 -705728 - IAPLTR1_Mm LTR ERVK 0 367 1 4 1797 492 99 0 0 chr3 158894087 158894158 -705625 + (TGGA)n Simple_repeat Simple_repeat 1 71 0 4 1797 2374 149 66 123 chr3 158894158 158894594 -705189 - RMER12 LTR ERVK -556 766 378 4 1797 4779 85 5 0 chr3 158894594 158895230 -704553 - L1_Mus2 LINE L1 -1 6565 5927 4 1797 2374 149 66 123 chr3 158895230 158895458 -704325 - RMER12 LTR ERVK -945 377 140 4 1797 517 157 19 10 chr3 158895459 158895562 -704221 + Lx4A LINE L1 5889 5992 -1066 4 1797 38997 12 0 6 chr3 158895853 158902244 -697539 - L1Md_A LINE L1 0 6582 233 4 1797 279 0 0 0 chr3 158902567 158902598 -697185 + (TAA)n Simple_repeat Simple_repeat 1 31 0 4 1797 561 215 81 0 chr3 158902598 158902747 -697036 - Lx3B LINE L1 -1 6972 6812 4 1797 293 308 39 148 chr3 158903234 158903463 -696320 - LTR89 LTR ERVL? -655 224 21 4 1797 1653 190 7 7 chr3 158903905 158904202 -695581 + Lx4A LINE L1 6762 7058 0 4 1797 23 0 0 0 chr3 158904406 158904429 -695354 + AT_rich Low_complexity Low_complexity 1 23 0 4 1797 719 289 58 48 chr3 158904671 158904980 -694803 - MLT1B LTR MaLR -48 342 31 4 1797 809 395 66 18 chr3 158905014 158905467 -694316 + MLT1F2 LTR MaLR 7 481 -79 4 1797 5121 161 84 15 chr3 158905468 158906524 -693259 + Lx2 LINE L1 5868 6996 -1 5 1797 262 270 16 16 chr3 158906675 158906739 -693044 - MTE2a LTR MaLR -73 346 283 5 1797 667 116 21 28 chr3 158906765 158906907 -692876 + L1_Mus4 LINE L1 6496 6636 0 5 1797 32370 91 5 5 chr3 158907016 158913173 -686610 - L1Md_F2 LINE L1 -5 6577 421 5 1797 327 244 87 121 chr3 158913198 158913347 -686436 - MTE2a LTR MaLR -235 144 1 5 1797 705 24 0 0 chr3 158914155 158914238 -685545 + (GAAA)n Simple_repeat Simple_repeat 2 84 0 5 1797 208 284 126 10 chr3 158914293 158914396 -685387 + MIRb SINE MIR 118 232 -36 5 1797 234 91 0 0 chr3 158914445 158914478 -685305 + (T)n Simple_repeat Simple_repeat 1 33 0 5 1797 6263 77 20 1 chr3 158914562 158915462 -684321 - L1_Mus3 LINE L1 -2 6636 5720 5 1797 6937 90 35 12 chr3 158916932 158917932 -681851 - RLTR13D5 LTR ERVK 0 1023 1 5 1797 21 36 0 0 chr3 158918317 158918345 -681438 + AT_rich Low_complexity Low_complexity 1 28 0 5 1797 25 0 0 0 chr3 158918560 158918585 -681198 + AT_rich Low_complexity Low_complexity 1 25 0 5 1797 530 268 180 0 chr3 158918585 158918768 -681015 - B3 SINE B2 0 216 1 5 1797 508 352 7 47 chr3 158919138 158919287 -680496 - RSINE1 SINE B4 -17 148 6 5 1797 2052 133 84 19 chr3 158919305 158919673 -680110 - Lx LINE L1 0 6654 6263 5 1797 2844 199 17 22 chr3 158919674 158920363 -679420 + L1VL4 LINE L1 286 971 -5331 5 1797 198 71 0 0 chr3 158920436 158920464 -679319 + (ATTTG)n Simple_repeat Simple_repeat 2 29 0 5 1797 201 74 0 0 chr3 158920675 158920702 -679081 + (CA)n Simple_repeat Simple_repeat 2 28 0 5 1797 1256 293 18 26 chr3 158920775 158921157 -678626 - MTE2a LTR MaLR 0 379 1 5 1797 374 307 14 41 chr3 158921157 158921303 -678480 - MER82 DNA MER2_type -282 371 230 5 1797 1527 148 64 0 chr3 158921303 158921586 -678197 - Lx2 LINE L1 -584 6413 6113 5 1797 2815 158 88 4 chr3 158921586 158922112 -677671 + Lx2 LINE L1 6427 6996 -1 5 1797 402 333 24 12 chr3 158922302 158922466 -677317 - Tigger1 DNA MER2_type 0 2418 2253 5 1797 433 329 46 17 chr3 158922475 158922648 -677135 + B3A SINE B2 2 179 -19 5 1797 504 167 0 0 chr3 158922657 158922753 -677030 + (CA)n Simple_repeat Simple_repeat 1 96 0 5 1797 225 184 20 0 chr3 158922756 158922805 -676978 + (CCA)n Simple_repeat Simple_repeat 1 50 0 5 1797 212 158 0 0 chr3 158922800 158922838 -676945 + (CAA)n Simple_repeat Simple_repeat 1 38 0 5 1797 833 244 144 108 chr3 158922926 158923363 -676420 - RMER4A LTR ERVK -13 453 1 5 1797 552 255 124 31 chr3 158923431 158923625 -676158 - B3 SINE B2 -3 213 2 5 1797 725 234 22 0 chr3 158923812 158923949 -675834 + B3 SINE B2 2 141 -75 5 1797 294 295 26 0 chr3 158924131 158924209 -675574 - ID4_ SINE ID -2 81 2 5 1797 536 291 16 8 chr3 158924787 158924915 -674868 + ID_B1 SINE B4 86 214 -10 5 1797 706 235 139 25 chr3 158925472 158925673 -674110 - MTD LTR MaLR 0 419 196 5 1797 258 214 43 33 chr3 158925678 158925770 -674013 - Lx9 LINE L1 -5 7639 7547 5 1797 262 216 284 0 chr3 158925791 158925893 -673890 - Lx9 LINE L1 -366 7278 7148 5 1797 1139 286 31 0 chr3 158925886 158926211 -673572 - Lx9 LINE L1 -1004 6640 6306 5 1797 838 279 15 0 chr3 158926284 158926485 -673298 - MTD LTR MaLR -215 204 1 5 1797 321 375 71 0 chr3 158926592 158926776 -673007 + MER45B DNA Tip100 110 306 -734 5 1797 5421 152 48 24 chr3 158926830 158928428 -671355 + Lx4A LINE L1 583 2227 -3650 5 1797 604 181 6 106 chr3 158928427 158928588 -671195 + Lx4A LINE L1 4861 5005 -872 5 1797 7417 152 26 4 chr3 158928588 158929428 -670355 + Lx4A LINE L1 5133 5976 -1082 5 1797 1184 68 0 0 chr3 158929428 158929575 -670208 - B1_Mus2 SINE Alu 0 147 1 5 1797 7417 166 23 28 chr3 158929575 158930650 -669133 + Lx4A LINE L1 5977 7049 -9 5 1797 187 306 34 34 chr3 158931531 158931619 -668164 - L2 LINE L2 -511 2908 2821 5 1797 4704 54 7 28 chr3 158932539 158933152 -666631 - L1Md_F2 LINE L1 -14 6568 5969 5 1797 499 261 50 7 chr3 158933585 158933724 -666059 + B1F SINE Alu 4 148 -1 5 1797 790 107 23 0 chr3 158934028 158934159 -665624 - Lx2 LINE L1 -1004 5993 5860 5 1797 3794 169 12 5 chr3 158934158 158934898 -664885 - Lx2 LINE L1 -141 5736 4992 5 1797 378 323 98 40 chr3 158935112 158935286 -664497 - B4 SINE B4 -98 194 11 5 1797 267 31 0 0 chr3 158935418 158935450 -664333 + (CA)n Simple_repeat Simple_repeat 1 32 0 5 1797 378 0 0 0 chr3 158935450 158935491 -664292 + (GA)n Simple_repeat Simple_repeat 2 43 0 5 1797 3718 126 93 54 chr3 158935514 158936237 -663546 + RMER17A LTR ERVK 1 751 0 5 1797 3963 203 19 20 chr3 158937287 158938127 -661656 + Lx4B LINE L1 6214 7052 -6 5 1797 3594 118 29 5 chr3 158938160 158938714 -661069 + RMER2 LTR ERV1 1 567 0 5 1797 1931 295 49 21 chr3 158938715 158939412 -660371 + Lx8 LINE L1 6571 7286 -187 5 1797 713 253 106 15 chr3 158939489 158939719 -660064 + ORR1D1 LTR MaLR 1 246 -124 5 1797 336 158 0 0 chr3 158939719 158939795 -659988 + CT-rich Low_complexity Low_complexity 1 76 0 5 1797 369 0 0 0 chr3 158939797 158939838 -659945 + (TG)n Simple_repeat Simple_repeat 2 42 0 5 1797 574 257 64 7 chr3 158939857 158939998 -659785 + ORR1D1 LTR MaLR 185 333 -51 5 1797 414 0 0 0 chr3 158940031 158940077 -659706 + (TG)n Simple_repeat Simple_repeat 1 46 0 5 1797 8929 100 26 14 chr3 158940588 158942214 -657569 - Lx3_Mus LINE L1 -1 7008 5367 5 1797 4181 98 21 1 chr3 158942210 158942873 -656910 + L1_Mur1 LINE L1 3945 4620 -1266 5 1797 693 351 17 28 chr3 158943333 158943620 -656163 - B4A SINE B4 -2 290 7 5 1797 22 0 0 0 chr3 158943909 158943931 -655852 + AT_rich Low_complexity Low_complexity 1 22 0 5 1797 948 329 28 76 chr3 158944101 158944496 -655287 - MTEa LTR MaLR -3 376 1 5 1797 26 0 0 0 chr3 158944588 158944614 -655169 + AT_rich Low_complexity Low_complexity 1 26 0 5 1797 732 328 11 99 chr3 158944726 158945010 -654773 - B4A SINE B4 -32 260 2 5 1797 711 242 12 30 chr3 158945273 158945439 -654344 + MTC LTR MaLR 1 163 -258 5 1797 555 78 0 0 chr3 158945464 158945541 -654242 + (TG)n Simple_repeat Simple_repeat 2 78 0 5 1797 318 106 0 0 chr3 158945679 158945726 -654057 + (CA)n Simple_repeat Simple_repeat 1 47 0 5 1797 16376 105 8 21 chr3 158945879 158949029 -650754 + L1Md_F2 LINE L1 609 3714 -2169 5 1797 30665 88 6 6 chr3 158949030 158954271 -645512 + L1Md_F LINE L1 557 5797 -86 5 1797 379 125 0 27 chr3 158954269 158954343 -645440 - L1Md_F2 LINE L1 -1195 4688 4617 5 1797 8002 98 1 0 chr3 158954324 158955620 -644163 + L1Md_F2 LINE L1 4708 6004 -580 5 1797 36999 36 0 6 chr3 158955632 158961628 -638155 - L1Md_T LINE L1 0 6582 630 5 1797 4395 79 7 3 chr3 158961630 158962228 -637555 + L1Md_F2 LINE L1 5983 6582 0 5 1797 5187 79 14 19 chr3 158962228 158962986 -636797 + L1Md_F2 LINE L1 5788 6542 -40 5 1797 417 30 14 29 chr3 158962986 158963055 -636728 + (TAAA)n Simple_repeat Simple_repeat 1 68 0 5 1797 2294 204 87 30 chr3 158963083 158963447 -636336 + Lx7 LINE L1 5394 5790 -1906 5 1797 646 210 55 38 chr3 158963447 158963630 -636153 + B2_Mm2 SINE B2 1 186 -9 5 1797 2294 248 68 20 chr3 158963630 158964141 -635642 + Lx7 LINE L1 5791 6326 -1370 5 1797 1784 200 82 9 chr3 158964133 158964824 -634959 - L1VL4 LINE L1 -2259 1300 533 5 1797 10769 194 15 3 chr3 158964992 158967670 -632113 + IAP-d-int LTR ERVK 1159 3868 -2674 5 1797 360 0 0 0 chr3 158967687 158967727 -632056 + (A)n Simple_repeat Simple_repeat 1 40 0 5 1797 8012 183 4 3 chr3 158967727 158969228 -630555 + IAP-d-int LTR ERVK 3886 5387 -1155 5 1797 5293 112 0 14 chr3 158969274 158970076 -629707 + IAP-d-int LTR ERVK 5394 6184 -358 5 1797 397 298 43 53 chr3 158970107 158970429 -629354 + IAP-d-int LTR ERVK 5632 5950 -531 5 1797 2527 108 0 0 chr3 158970401 158970754 -629029 + IAP-d-int LTR ERVK 6190 6542 0 5 1797 2563 88 53 0 chr3 158970754 158971095 -628688 + RLTR10D LTR ERVK 1 359 0 5 1797 474 250 9 0 chr3 158971098 158971210 -628573 - RMER1C Other Other -822 520 408 5 1797 248 275 38 0 chr3 158971572 158971652 -628131 - RMER1C Other Other -1050 292 210 5 1797 669 244 117 15 chr3 158971653 158971849 -627934 + B3 SINE B2 1 216 0 5 1797 1486 189 104 8 chr3 158971851 158972225 -627558 - RMER17C LTR ERVK 0 410 1 5 1797 609 268 0 0 chr3 158972241 158972379 -627404 - RMER1C Other Other -1121 221 84 5 1797 900 138 0 14 chr3 158972391 158972531 -627252 + RMER13A LTR ERVK 154 291 -569 5 1797 632 262 18 13 chr3 158972523 158972702 -627081 + RMER13A LTR ERVK 565 779 -81 5 1797 786 230 81 10 chr3 158973021 158973219 -626564 + B3 SINE B2 2 213 -3 5 1797 643 363 28 28 chr3 158973481 158973770 -626013 + B4A SINE B4 2 290 -2 5 1797 3196 71 0 0 chr3 158973932 158974343 -625440 + L1_Mus1 LINE L1 6156 6566 -1 5 1797 23 0 0 0 chr3 158974343 158974366 -625417 + AT_rich Low_complexity Low_complexity 1 23 0 5 1797 700 267 115 141 chr3 158974741 158974775 -625008 - MT2A LTR ERVL 0 584 529 5 1797 438 20 0 0 chr3 158974775 158974826 -624957 + (TG)n Simple_repeat Simple_repeat 1 51 0 5 1797 1395 237 150 90 chr3 158974826 158975259 -624524 - MT2A LTR ERVL -56 528 1 5 1797 1100 298 40 20 chr3 158975354 158975700 -624083 - MTEa LTR MaLR -2 377 25 5 1797 4113 97 19 0 chr3 158975915 158976534 -623249 + Lx3_Mus LINE L1 6319 6949 -60 5 1797 2534 175 28 43 chr3 158976788 158977320 -622463 + RLTR12B LTR ERVK 1 524 -4 5 1797 607 314 115 62 chr3 158977406 158977746 -622037 - MLT1A0 LTR MaLR 0 365 8 5 1797 180 330 138 0 chr3 158978336 158978445 -621338 - L2c LINE L2 -239 3148 3025 5 1797 1226 236 74 69 chr3 158978672 158979036 -620747 + MTEa LTR MaLR 12 377 -2 5 1797 521 0 31 0 chr3 158980229 158980293 -619490 + (TCTA)n Simple_repeat Simple_repeat 1 66 0 5 1797 233 364 60 18 chr3 158981851 158982019 -617764 - MLT1B LTR MaLR -3 387 213 5 1797 3911 91 3 21 chr3 158982451 158983077 -616706 - L1_Mur1 LINE L1 -565 5321 4707 5 1797 4339 152 35 0 chr3 158983082 158983801 -615982 + Lx3C LINE L1 6231 6974 -2 5 1797 667 109 0 0 chr3 158984064 158984156 -615627 + BC1_Mm scRNA scRNA 1 92 -60 5 1797 306 73 0 0 chr3 158984172 158984213 -615570 + (TG)n Simple_repeat Simple_repeat 2 42 0 5 1797 219 88 0 0 chr3 158984217 158984251 -615532 + (TA)n Simple_repeat Simple_repeat 2 35 0 5 1797 829 148 123 6 chr3 158985602 158985772 -614011 + Lx3_Mus LINE L1 6802 6991 -18 5 1797 325 263 8 88 chr3 158985931 158986056 -613727 - PB1D10 SINE Alu -2 115 1 5 1797 3920 146 94 9 chr3 158986080 158986095 -613688 - Lx3_Mus LINE L1 -115 6894 6879 5 1797 372 22 0 0 chr3 158986095 158986140 -613643 + (CA)n Simple_repeat Simple_repeat 1 45 0 5 1797 3920 116 82 8 chr3 158986140 158987000 -612783 - Lx3_Mus LINE L1 -131 6878 5908 5 1797 22 0 0 0 chr3 158987353 158987375 -612408 + AT_rich Low_complexity Low_complexity 1 22 0 5 1797 208 281 18 0 chr3 158987543 158987600 -612183 - MIRb SINE MIR -18 250 193 5 1797 243 284 25 0 chr3 158987926 158988007 -611776 + (TG)n Simple_repeat Simple_repeat 2 84 0 6 1797 267 103 0 0 chr3 158988051 158988090 -611693 + (TATG)n Simple_repeat Simple_repeat 4 42 0 6 1797 353 315 54 0 chr3 158988180 158988291 -611492 - MER5A DNA MER1_type -26 163 47 6 1797 364 358 53 26 chr3 158988515 158988667 -611116 - MLT1J1 LTR MaLR -147 297 142 6 1797 424 167 13 12 chr3 158988974 158989051 -610732 - RLTR20B1 LTR ERVK -493 70 1 6 1797 263 288 82 67 chr3 158989819 158989953 -609830 - L3 LINE CR1 -1036 3453 3318 6 1797 336 111 0 0 chr3 158989997 158990060 -609723 + (A)n Simple_repeat Simple_repeat 1 63 0 6 1797 961 146 139 19 chr3 158990113 158990329 -609454 + RLTR31_Mur LTR ERVK 7 248 -305 6 1798 459 333 19 0 chr3 158990465 158990624 -609159 - RSINE1 SINE B4 0 165 4 6 1798 3657 134 14 9 chr3 158990782 158991337 -608446 - Lx2 LINE L1 -1 6996 6439 6 1798 808 239 11 0 chr3 158991359 158991535 -608248 - Lx9 LINE L1 -719 6925 6748 6 1798 835 227 37 16 chr3 158991555 158991801 -607982 + L1_Rod LINE L1 4980 5230 -617 6 1798 23 0 0 0 chr3 158991830 158991853 -607930 + AT_rich Low_complexity Low_complexity 1 23 0 6 1798 20175 124 131 9 chr3 158991857 158996024 -603759 + Lx LINE L1 452 5127 -756 6 1798 8155 44 2 0 chr3 158996024 158997020 -602763 + L1Md_F3 LINE L1 5587 6584 0 6 1798 20175 98 72 2 chr3 158997020 158997867 -601916 + Lx LINE L1 5128 6072 -582 6 1798 260 248 69 28 chr3 158997915 158998060 -601723 - L1MEc LINE L1 -3926 2474 2324 6 1798 232 65 65 0 chr3 158998652 158998698 -601085 + (CAAA)n Simple_repeat Simple_repeat 2 50 0 6 1798 242 293 55 82 chr3 158999451 158999641 -600142 - MTC-int LTR MaLR -445 653 494 6 1798 531 280 159 62 chr3 159000273 159000593 -599190 - ORR1E LTR MaLR -3 356 6 1 1798 562 324 56 0 chr3 159000638 159000817 -598966 - RMER30 DNA MER1_type -9 193 5 2 1798 29949 78 7 1 chr3 159001129 159006109 -593674 + L1Md_F2 LINE L1 578 5586 -297 3 1798 7871 56 0 10 chr3 159006109 159007143 -592640 + L1Md_F2 LINE L1 5587 6582 0 3 1798 207 100 0 0 chr3 159007233 159007263 -592520 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 4 1798 272 343 47 19 chr3 159009151 159009258 -590525 + B1F SINE Alu 39 148 -1 5 1798 831 57 16 8 chr3 159009314 159009437 -590346 + (GAAA)n Simple_repeat Simple_repeat 1 124 0 6 1798 324 238 188 16 chr3 159009594 159009722 -590061 - MTD LTR MaLR 0 379 230 7 1798 415 361 10 58 chr3 159009735 159009917 -589866 - MTD LTR MaLR -206 213 35 7 1798 956 209 22 22 chr3 159009917 159010142 -589641 + URR1B DNA MER1_type 1 225 0 8 1798 415 361 10 58 chr3 159010142 159010165 -589618 - MTD LTR MaLR -385 34 18 7 1798 393 322 44 67 chr3 159010179 159010495 -589288 + LTR37A LTR ERV1 116 424 -2 9 1798 767 169 24 0 chr3 159012413 159012537 -587246 - RLTR27 LTR ERVK -182 127 1 1 1798 1434 153 0 22 chr3 159012537 159012804 -586979 - MMERVK10C-int LTR ERVK 0 7581 7321 1 1798 626 335 33 35 chr3 159012946 159013515 -586268 - MMERVK10C-int LTR ERVK -520 7061 6494 1 1798 758 55 0 0 chr3 159014009 159014119 -585664 - RLTR10-int LTR ERVK -1135 852 743 1 1798 1201 60 43 16 chr3 159014177 159014363 -585420 - RLTR10-int LTR ERVK -1243 744 554 1 1798 279 174 0 0 chr3 159014359 159014405 -585378 - RLTR10-int LTR ERVK -7314 267 222 1 1798 1935 135 44 0 chr3 159014439 159014735 -585048 - RLTR27 LTR ERVK 0 309 1 1 1798 22 35 0 0 chr3 159014775 159014804 -584979 + AT_rich Low_complexity Low_complexity 1 29 0 1 1798 23 78 0 0 chr3 159015627 159015678 -584105 + AT_rich Low_complexity Low_complexity 1 51 0 1 1798 7032 66 3 10 chr3 159015753 159016681 -583102 + L1Md_F2 LINE L1 5660 6581 -1 1 1798 1250 212 29 32 chr3 159016703 159016886 -582897 - MTC-int LTR MaLR -437 821 639 1 1798 7256 61 2 1 chr3 159016886 159017777 -582006 + RLTR13B1 LTR ERVK 2 893 0 1 1798 1250 224 36 38 chr3 159017777 159017914 -581869 - MTC-int LTR MaLR -539 719 545 1 1798 3006 155 103 32 chr3 159018024 159018623 -581160 + RLTR26 LTR ERVK 1 642 0 1 1798 738 224 23 133 chr3 159018637 159018946 -580837 - ORR1A3-int LTR MaLR -998 965 691 1 1798 630 239 5 130 chr3 159018776 159018992 -580791 - MT2B LTR ERVL -332 269 81 2 1798 432 120 0 0 chr3 159019066 159019141 -580642 - Lx3_Mus LINE L1 -851 6158 6084 2 1798 5464 127 1 18 chr3 159019141 159019976 -579807 + Lx3A LINE L1 6148 6968 -13 2 1798 3060 80 6 36 chr3 159019976 159020445 -579338 - L1_Mus1 LINE L1 -355 5528 5074 2 1798 6872 88 4 0 chr3 159020443 159021470 -578313 + L1_Mus1 LINE L1 5537 6567 0 2 1798 244 150 50 0 chr3 159021491 159021551 -578232 + (TAAA)n Simple_repeat Simple_repeat 2 64 0 2 1798 27 73 0 0 chr3 159021867 159021922 -577861 + AT_rich Low_complexity Low_complexity 1 55 0 2 1798 6904 165 17 18 chr3 159022298 159023530 -576253 - Lx4B LINE L1 -5 7053 5823 2 1798 1452 139 25 0 chr3 159023521 159023759 -576024 - L1_Mus4 LINE L1 0 6636 6393 2 1798 708 114 61 0 chr3 159023759 159023890 -575893 - L1_Mus4 LINE L1 -715 5921 5783 2 1798 243 0 22 67 chr3 159023917 159023962 -575821 + (TTTTG)n Simple_repeat Simple_repeat 3 45 0 2 1798 8325 123 112 4 chr3 159023991 159026496 -573287 - L1_Mus3 LINE L1 -7 6631 3812 2 1798 286 53 0 0 chr3 159026505 159026543 -573240 + MusHAL1 LINE L1 554 591 -2121 3 1798 1122 271 119 12 chr3 159026903 159027307 -572476 + RMER1B Other Other 50 496 -570 3 1798 186 71 0 0 chr3 159027362 159027390 -572393 + (CAGAGA)n Simple_repeat Simple_repeat 2 29 0 3 1798 198 208 0 0 chr3 159027403 159027456 -572327 + (CAGAGA)n Simple_repeat Simple_repeat 2 54 0 3 1798 378 272 183 10 chr3 159027459 159027605 -572178 + RMER1A Other Other 3 139 -891 3 1798 2740 267 180 10 chr3 159027628 159028505 -571278 + RMER1A Other Other 1 1026 -4 3 1798 28713 104 30 15 chr3 159029237 159034563 -565220 + L1_Mur1 LINE L1 3 5744 -142 3 1798 5753 125 40 5 chr3 159034561 159035559 -564224 + Lx3_Mus LINE L1 5974 7006 -3 3 1798 240 296 0 0 chr3 159036130 159036184 -563599 + (CATA)n Simple_repeat Simple_repeat 3 56 0 3 1798 2694 179 44 14 chr3 159036859 159037410 -562373 + RMER2 LTR ERV1 1 567 0 3 1798 1600 73 14 0 chr3 159037428 159037646 -562137 - L1Md_F2 LINE L1 -2 6580 6360 3 1798 1561 41 0 0 chr3 159037647 159037842 -561941 + L1Md_F2 LINE L1 6154 6348 -234 3 1798 3391 281 160 8 chr3 159037935 159039203 -560580 + Tigger1 DNA MER2_type 289 1749 -669 4 1798 232 207 0 33 chr3 159039558 159039618 -560165 + L1_Mur3 LINE L1 968 1025 -6687 4 1798 2779 174 138 6 chr3 159039592 159040738 -559045 + Lx2B LINE L1 5642 6939 -61 4 1798 206 338 59 22 chr3 159041130 159041238 -558545 - MIRc SINE MIR -159 109 2 4 1798 296 338 107 7 chr3 159041893 159042042 -557741 - L2a LINE L2 0 3426 3263 4 1798 261 0 0 0 chr3 159042315 159042344 -557439 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 4 1798 324 318 86 70 chr3 159042440 159042656 -557127 - MLT2B4 LTR ERVL -249 307 102 4 1798 675 294 7 0 chr3 159042666 159042802 -556981 + RSINE1 SINE B4 11 147 -18 4 1798 338 246 123 0 chr3 159042871 159042985 -556798 - MLT2B4 LTR ERVL -428 128 1 4 1798 238 361 76 0 chr3 159043299 159043418 -556365 - MIR SINE MIR -114 148 21 4 1798 221 330 23 78 chr3 159044177 159044305 -555478 - MIR SINE MIR -42 220 100 4 1798 1069 50 7 0 chr3 159044813 159044952 -554831 + B1_Mus1 SINE Alu 9 148 0 5 1798 521 293 38 45 chr3 159045791 159045948 -553835 + ORR1E LTR MaLR 41 196 -163 5 1798 436 221 114 54 chr3 159045956 159046123 -553660 + Lx5 LINE L1 6874 7050 0 5 1798 199 359 138 37 chr3 159046169 159046357 -553426 + L2 LINE L2 2847 3053 -366 5 1798 363 236 31 170 chr3 159046447 159046641 -553142 + RLTR22_Mur LTR ERVK 1575 1741 -107 5 1798 344 342 101 0 chr3 159046640 159046798 -552985 - MLT1A0 LTR MaLR -12 353 180 5 1798 3168 70 7 2 chr3 159046897 159047311 -552472 + L1_Mus2 LINE L1 6149 6564 -2 5 1798 378 42 0 0 chr3 159047328 159047376 -552407 + (GAAA)n Simple_repeat Simple_repeat 3 50 0 5 1798 1908 214 17 43 chr3 159047378 159047434 -552349 + RMER6D LTR ERVK 312 367 -353 5 1798 225 0 0 0 chr3 159047434 159047459 -552324 + (TG)n Simple_repeat Simple_repeat 1 25 0 5 1798 1908 214 17 43 chr3 159047459 159047818 -551965 + RMER6D LTR ERVK 368 716 -4 5 1798 33661 45 0 4 chr3 159048230 159053501 -546282 + L1Md_T LINE L1 242 5589 -297 6 1798 8413 37 0 0 chr3 159053501 159054497 -545286 + L1Md_T LINE L1 5590 6585 0 6 1798 960 308 142 12 chr3 159054516 159054848 -544935 + MTE2b LTR MaLR 5 379 0 6 1798 216 385 44 0 chr3 159055612 159055703 -544080 - MER5A DNA MER1_type -22 167 73 6 1798 1147 272 127 59 chr3 159056145 159056571 -543212 - MT2A LTR ERVL -3 530 76 6 1798 775 201 0 0 chr3 159056574 159056708 -543075 + B2_Mm2 SINE B2 1 134 -61 6 1798 274 163 41 0 chr3 159056763 159056812 -542971 - MT2A LTR ERVL -482 51 1 6 1798 836 20 0 10 chr3 159058069 159058172 -541611 + (GAGAA)n Simple_repeat Simple_repeat 4 105 0 6 1798 525 58 0 0 chr3 159059415 159059484 -540299 + (GA)n Simple_repeat Simple_repeat 1 69 0 6 1798 482 131 0 10 chr3 159059812 159059912 -539871 + (TC)n Simple_repeat Simple_repeat 2 100 0 6 1798 399 155 0 0 chr3 159059911 159059995 -539788 + (TG)n Simple_repeat Simple_repeat 1 84 0 6 1798 770 301 24 21 chr3 159060003 159060291 -539492 - B4 SINE B4 -2 290 2 6 1798 893 77 0 15 chr3 159061472 159061604 -538179 + L1_Mus1 LINE L1 6430 6559 -8 7 1798 678 58 0 0 chr3 159061604 159061691 -538092 + (GAGAA)n Simple_repeat Simple_repeat 2 88 0 7 1798 1620 0 0 0 chr3 159061691 159061900 -537883 + (GGGAGA)n Simple_repeat Simple_repeat 1 209 0 7 1798 489 76 0 0 chr3 159061902 159061968 -537815 + (GAGAA)n Simple_repeat Simple_repeat 5 70 0 7 1798 279 343 0 0 chr3 159061970 159062037 -537746 + polypurine Low_complexity Low_complexity 76 142 0 7 1798 308 24 24 0 chr3 159062038 159062079 -537704 + (CAAGA)n Simple_repeat Simple_repeat 2 43 0 7 1798 573 249 102 23 chr3 159062945 159063122 -536661 + ORR1E LTR MaLR 1 191 -168 7 1798 413 231 33 44 chr3 159063095 159063276 -536507 + RMER17C LTR ERVK 97 275 -135 7 1798 696 45 0 0 chr3 159063276 159063364 -536419 + (GAAA)n Simple_repeat Simple_repeat 2 89 0 7 1798 869 263 60 41 chr3 159063364 159063630 -536153 + ORR1E LTR MaLR 84 354 -5 7 1798 273 254 0 69 chr3 159063887 159063959 -535824 - PB1D10 SINE Alu 0 117 51 8 1798 2587 152 34 2 chr3 159064345 159064812 -534971 + L1_Mm LINE L1 4636 5117 -766 8 1798 1719 101 4 0 chr3 159064809 159065047 -534736 + L1_Mur1 LINE L1 5605 5843 -43 8 1798 3766 178 51 8 chr3 159065043 159065406 -534377 + L1_Mur2 LINE L1 4923 5301 -576 8 1798 243 0 0 0 chr3 159065406 159065433 -534350 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 8 1798 3766 178 51 8 chr3 159065433 159065847 -533936 + L1_Mur2 LINE L1 5302 5734 -143 8 1798 17892 100 7 11 chr3 159065862 159069396 -530387 + L1Md_F2 LINE L1 253 3768 -2115 8 1798 630 120 0 0 chr3 159069394 159069486 -530297 + L1Md_F2 LINE L1 4810 4901 -982 8 1798 2402 86 2 243 chr3 159069483 159069718 -530065 + L1Md_F2 LINE L1 5443 5665 -218 8 1798 522 0 0 0 chr3 159069718 159069776 -530007 + (TTTA)n Simple_repeat Simple_repeat 2 59 0 8 1798 6633 80 3 37 chr3 159069776 159070800 -528983 + L1Md_F2 LINE L1 5666 6558 -24 8 1798 186 43 0 0 chr3 159070808 159070831 -528952 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 8 1798 4036 122 67 12 chr3 159070847 159071502 -528281 + Lx2B LINE L1 5727 6417 -583 8 1798 453 252 16 16 chr3 159071498 159071627 -528156 + Lx4A LINE L1 6925 7053 -5 8 1798 357 24 0 0 chr3 159071627 159071669 -528114 + (TAAA)n Simple_repeat Simple_repeat 2 43 0 9 1798 242 360 62 50 chr3 159071673 159071834 -527949 - MLT1G1 LTR MaLR -349 230 68 9 1798 1187 281 151 52 chr3 159072109 159072605 -527178 + MT2B LTR ERVL 1 545 -56 9 1798 3830 185 87 18 chr3 159072605 159073672 -526111 + L1_Mur2 LINE L1 911 2051 -3826 9 1798 432 0 0 0 chr3 159073674 159073722 -526061 + (CA)n Simple_repeat Simple_repeat 2 49 0 9 1798 2383 202 70 16 chr3 159073727 159074230 -525553 - RMER19C LTR ERVK 0 611 82 9 1798 558 0 0 0 chr3 159074239 159074301 -525482 + (GA)n Simple_repeat Simple_repeat 2 63 0 9 1798 1597 231 42 23 chr3 159074306 159074691 -525092 + Lx5 LINE L1 5968 6359 -691 9 1798 771 231 35 89 chr3 159074691 159075004 -524779 - RMER6B LTR ERVK 0 461 91 9 1798 423 0 0 0 chr3 159075004 159075051 -524732 + (TG)n Simple_repeat Simple_repeat 2 48 0 9 1798 581 205 38 108 chr3 159075051 159075076 -524707 - RMER6B LTR ERVK -371 90 67 9 1798 2604 246 83 15 chr3 159075190 159075841 -523942 + Lx5 LINE L1 6355 7049 -1 9 1798 1277 225 53 22 chr3 159076421 159076759 -523024 + L1_Mur2 LINE L1 892 1221 -6507 1 1798 459 0 0 0 chr3 159076759 159076810 -522973 + (CA)n Simple_repeat Simple_repeat 2 52 0 1 1798 6748 196 56 26 chr3 159076810 159077648 -522135 + L1_Mur2 LINE L1 1194 2068 -3812 1 1798 279 79 0 0 chr3 159077648 159077686 -522097 + (CCA)n Simple_repeat Simple_repeat 1 38 0 1 1798 6748 196 56 26 chr3 159077686 159078619 -521164 + L1_Mur2 LINE L1 2069 3015 -2865 1 1798 380 203 9 15 chr3 159078635 159078731 -521052 + Lx4B LINE L1 6147 6240 -818 1 1798 3432 181 33 15 chr3 159078731 159079399 -520384 + Lx4B LINE L1 6379 7058 0 1 1798 231 36 0 0 chr3 159081192 159081220 -518563 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 1 1798 410 79 16 0 chr3 159081294 159081357 -518426 + (TTTA)n Simple_repeat Simple_repeat 1 64 0 1 1798 2023 232 122 18 chr3 159081357 159081857 -517926 - Lx5 LINE L1 0 7050 6499 1 1798 1250 108 11 11 chr3 159083325 159083513 -516270 - B2_Mm2 SINE B2 -6 189 2 1 1798 23 33 0 0 chr3 159083630 159083660 -516123 + AT_rich Low_complexity Low_complexity 1 30 0 1 1798 685 269 47 0 chr3 159083706 159083899 -515884 - Lx6 LINE L1 -1337 6123 5922 1 1798 261 268 92 11 chr3 159083899 159083986 -515797 - MLT1D LTR MaLR -387 118 25 1 1798 22 0 0 0 chr3 159084230 159084252 -515531 + AT_rich Low_complexity Low_complexity 1 22 0 1 1798 3272 36 8 0 chr3 159085029 159085422 -514361 + MTA_Mm LTR MaLR 1 396 0 1 1798 438 278 144 39 chr3 159085544 159086120 -513663 + L1MEf LINE L1 1413 2000 -4400 1 1798 881 312 23 8 chr3 159086314 159086576 -513207 + B4A SINE B4 5 270 -22 1 1798 350 328 8 54 chr3 159086735 159086864 -512919 + RSINE1 SINE B4 3 125 -40 1 1798 13302 98 12 11 chr3 159087257 159089937 -509846 + L1_Mus2 LINE L1 3883 6564 -2 1 1798 243 0 0 0 chr3 159089944 159089971 -509812 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 1798 468 0 0 0 chr3 159090384 159090436 -509347 + (TG)n Simple_repeat Simple_repeat 2 53 0 1 1798 3692 123 18 2 chr3 159090609 159091162 -508621 + Lx LINE L1 6084 6645 -9 1 1798 3238 163 94 3 chr3 159091776 159092415 -507368 - Lx2B LINE L1 -436 5441 4745 1 1798 1203 197 36 0 chr3 159092411 159092634 -507149 + Lx2B LINE L1 5483 5713 -173 1 1798 1173 214 132 44 chr3 159092634 159093179 -506604 - RMER19B LTR ERVK 0 902 1 1 1798 3026 256 58 159 chr3 159093180 159093486 -506297 + Lx2B LINE L1 5706 5992 -1012 1 1798 1052 116 0 0 chr3 159093486 159093632 -506151 + B2_Mm2 SINE B2 1 146 -49 1 1798 189 0 0 0 chr3 159093636 159093657 -506126 + (TAAA)n Simple_repeat Simple_repeat 1 21 0 1 1798 4061 205 70 34 chr3 159093657 159094644 -505139 + Lx2B LINE L1 5997 7002 -6 1 1798 9194 150 74 6 chr3 159094644 159096356 -503427 - ORR1A2-int LTR MaLR -133 1830 2 1 1798 1394 116 303 0 chr3 159096357 159096608 -503175 - ORR1A2 LTR MaLR 0 327 1 1 1798 1688 238 46 32 chr3 159096609 159097168 -502615 - RMER12 LTR ERVK -1279 569 1 1 1798 1696 195 10 58 chr3 159097435 159097770 -502013 + RLTR31A_Mm LTR ERVK 1 321 -263 1 1798 901 79 0 67 chr3 159097770 159097919 -501864 + L1_Mus2 LINE L1 6428 6566 0 1 1798 1696 195 10 58 chr3 159097919 159097980 -501803 + RLTR31A_Mm LTR ERVK 322 377 -207 1 1798 1023 213 4 4 chr3 159097992 159098218 -501565 - L1_Mur2 LINE L1 -3828 2049 1824 1 1798 2517 67 42 3 chr3 159098226 159098583 -501200 - L1_Mus3 LINE L1 0 6638 6268 1 1798 1441 98 13 6 chr3 159098584 159098924 -500859 + RMER16 LTR ERVK 158 533 0 1 1798 533 272 97 67 chr3 159099713 159099778 -500005 - LTR37A LTR ERV1 -42 384 328 1 1798 3049 83 2 7 chr3 159099778 159100201 -499582 - BGLII LTR ERVK 0 421 1 1 1798 533 272 97 67 chr3 159100201 159100434 -499349 - LTR37A LTR ERV1 -99 327 77 1 1798 202 158 68 34 chr3 159100476 159100535 -499248 + (TTTG)n Simple_repeat Simple_repeat 4 64 0 1 1798 3804 243 68 68 chr3 159101952 159104040 -495743 - Lx5 LINE L1 0 7050 4982 1 1798 319 315 0 0 chr3 159104212 159104301 -495482 - PB1D10 SINE Alu -2 115 27 1 1798 28725 77 4 3 chr3 159104463 159109390 -490393 - L1Md_Gf LINE L1 -741 5145 120 1 1798 6061 186 26 17 chr3 159109381 159109820 -489963 - Lx5 LINE L1 -876 5004 4554 1 1798 2718 95 5 64 chr3 159109820 159110257 -489526 - RLTR10A LTR ERVK 0 411 1 1 1798 6061 186 26 17 chr3 159110257 159111144 -488639 - Lx5 LINE L1 -1327 4553 3665 1 1798 3006 133 63 11 chr3 159111454 159111473 -488310 - RLTR31_Mur LTR ERVK 0 553 535 1 1798 312 48 0 0 chr3 159111473 159111515 -488268 + (CAA)n Simple_repeat Simple_repeat 2 43 0 1 1798 3006 133 63 11 chr3 159111515 159112021 -487762 - RLTR31_Mur LTR ERVK -19 534 2 1 1798 756 293 32 38 chr3 159112225 159112572 -487211 + RLTR15 LTR ERVK 1 345 -14 1 1798 898 201 6 0 chr3 159112683 159112852 -486931 - Lx5 LINE L1 -2218 3659 3490 1 1798 4346 63 0 2 chr3 159112848 159113416 -486367 - L1_Mm LINE L1 -3196 2687 2121 1 1798 2151 56 0 0 chr3 159113415 159113681 -486102 + L1Md_F2 LINE L1 5321 5586 -297 1 1798 8091 42 2 3 chr3 159113682 159114694 -485089 + L1Md_F2 LINE L1 5588 6582 0 1 1798 5946 67 13 6 chr3 159114750 159115545 -484238 + L1Md_F2 LINE L1 5783 6582 0 1 1798 2548 185 39 34 chr3 159115574 159115725 -484058 - Lx5 LINE L1 -2404 3476 3336 1 1798 1004 157 33 6 chr3 159115725 159115905 -483878 - B2_Mm2 SINE B2 -10 185 1 1 1798 2548 195 32 72 chr3 159115905 159116656 -483127 - Lx5 LINE L1 -2545 3335 2688 1 1798 387 41 0 0 chr3 159118767 159118816 -480967 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 1798 1206 214 57 23 chr3 159118883 159119226 -480557 + L1_Rod LINE L1 2533 2887 -2960 1 1798 615 73 27 27 chr3 159119226 159119338 -480445 + L1Md_F2 LINE L1 6471 6582 0 1 1798 1143 228 138 110 chr3 159119364 159119935 -479848 + L1_Rod LINE L1 3386 3983 -1864 1 1798 1565 30 45 0 chr3 159119935 159120133 -479650 - L1Md_F3 LINE L1 -14 6570 6364 1 1798 1785 44 0 13 chr3 159120131 159120362 -479421 + L1Md_F2 LINE L1 6354 6581 -1 1 1798 1143 228 138 110 chr3 159120362 159120405 -479378 + L1_Rod LINE L1 3984 4022 -1825 1 1798 616 0 38 0 chr3 159120405 159120484 -479299 + (GAAA)n Simple_repeat Simple_repeat 3 84 0 1 1798 1143 228 138 110 chr3 159120484 159120611 -479172 + L1_Rod LINE L1 4023 4148 -1699 1 224 4925 139 2 19 chr3 159121269 159122066 -477717 - Lx2B LINE L1 -4 6996 6213 1 1799 297 329 0 0 chr3 159122869 159122945 -476838 + ID4_ SINE ID 5 80 -3 1 1799 994 133 0 22 chr3 159122945 159123129 -476654 + GA-rich Low_complexity Low_complexity 1 180 0 1 1799 384 77 0 0 chr3 159123129 159123181 -476602 + (GAAA)n Simple_repeat Simple_repeat 1 52 0 1 1799 260 83 21 0 chr3 159123931 159123979 -475804 + (TTTG)n Simple_repeat Simple_repeat 1 49 0 1 1799 1129 82 0 0 chr3 159123980 159124126 -475657 - B1_Mus1 SINE Alu -2 146 1 1 1799 25 31 0 0 chr3 159124132 159124164 -475619 + AT_rich Low_complexity Low_complexity 1 32 0 1 1799 1081 96 0 0 chr3 159124251 159124418 -475365 + L1_Mm LINE L1 2054 2220 -3663 1 1799 6945 82 17 1 chr3 159124413 159125340 -474443 + L1_Mus2 LINE L1 5620 6561 -5 1 1799 4282 149 85 17 chr3 159125357 159126225 -473558 + L1_Mur1 LINE L1 3000 3926 -1960 1 1799 654 298 73 25 chr3 159126650 159126977 -472806 - RLTR15 LTR ERVK -16 343 1 1 1799 879 339 29 0 chr3 159126989 159127263 -472520 + Lx8 LINE L1 6994 7275 -198 1 1799 189 0 0 0 chr3 159127263 159127284 -472499 + (A)n Simple_repeat Simple_repeat 1 21 0 1 1799 603 0 0 0 chr3 159127327 159127394 -472389 + (TC)n Simple_repeat Simple_repeat 1 67 0 1 1799 348 83 0 0 chr3 159127394 159127441 -472342 + (CA)n Simple_repeat Simple_repeat 1 48 0 1 1799 1502 179 23 46 chr3 159127450 159127755 -472028 + ORR1B1 LTR MaLR 41 338 -56 1 1799 539 241 6 36 chr3 159127774 159127942 -471841 + L1_Mur3 LINE L1 883 1045 -6667 1 1799 370 313 80 86 chr3 159127942 159128413 -471370 + RLTR12B LTR ERVK 26 490 -37 1 1799 2407 105 73 92 chr3 159128494 159128985 -470798 + RLTR45 LTR ERVK 1 482 0 1 1799 16283 78 11 11 chr3 159129107 159131126 -468657 + Lx3_Mus LINE L1 3611 5636 -250 1 1799 3266 33 8 10 chr3 159131126 159131523 -468260 + MTA_Mm LTR MaLR 1 396 0 1 1799 16283 99 17 12 chr3 159131523 159132871 -466912 + Lx3_Mus LINE L1 5634 6989 -20 1 1799 231 88 0 0 chr3 159132871 159132905 -466878 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 1 1799 947 316 59 53 chr3 159132905 159133563 -466220 + RMER12B LTR ERVK 454 1209 -195 1 1799 21 0 0 0 chr3 159133704 159133725 -466058 + AT_rich Low_complexity Low_complexity 1 21 0 1 1799 1486 180 16 101 chr3 159134440 159134817 -464966 - RMER16 LTR ERVK 0 533 189 1 1799 2431 87 0 3 chr3 159135161 159135494 -464289 - L1_Mus4 LINE L1 -653 5983 5652 1 1799 1670 111 16 0 chr3 159135488 159135740 -464043 + L1_Mm LINE L1 4314 4569 -1314 1 1799 2824 129 2 0 chr3 159136537 159136972 -462811 + L1_Mur2 LINE L1 4760 5195 -682 1 1799 5258 194 119 32 chr3 159136979 159137256 -462527 - Lx4B LINE L1 -2 7056 6707 1 1799 1726 28 5 9 chr3 159137256 159137476 -462307 + L1Md_F3 LINE L1 6366 6584 0 1 1799 5258 181 92 22 chr3 159137476 159139278 -460505 - Lx4B LINE L1 -352 6706 4735 1 1799 3394 148 146 0 chr3 159139272 159139535 -460248 - Lx4B LINE L1 -2132 3745 3477 1 1799 262 0 26 26 chr3 159139535 159139574 -460209 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 1 1799 3394 148 146 0 chr3 159139574 159139997 -459786 - Lx4B LINE L1 -2401 3476 2960 1 1799 2362 179 11 5 chr3 159140537 159140985 -458798 + RLTR22_Mur LTR ERVK 309 759 -1089 1 1799 2181 46 4 0 chr3 159141009 159141272 -458511 + L1Md_F2 LINE L1 5323 5586 -297 1 1799 8108 45 2 1 chr3 159141272 159142267 -457516 + L1Md_F2 LINE L1 5587 6582 0 1 1799 4387 156 71 71 chr3 159142343 159143301 -456482 + RLTR22_Mur LTR ERVK 886 1843 -5 1 1799 583 267 37 6 chr3 159144337 159144499 -455284 + RMER15 LTR ERVL 407 573 -2 1 1799 647 343 225 52 chr3 159144501 159144964 -454819 + MLT1F2 LTR MaLR 5 547 -13 1 1799 609 228 183 50 chr3 159145499 159145739 -454044 - RLTR10A LTR ERVK 0 411 140 1 1799 1748 216 12 27 chr3 159145774 159146267 -453516 - RLTR45-int LTR ERVK -202 7042 6522 1 1799 2104 309 55 46 chr3 159146407 159148287 -451496 - IAP-d-int LTR ERVK -2050 5531 3472 1 1799 360 255 53 46 chr3 159148346 159148498 -451285 - IAP-d-int LTR ERVK -4149 2393 2241 1 1799 420 200 54 54 chr3 159148695 159148806 -450977 - RLTR45-int LTR ERVK -1559 428 318 1 1799 597 229 188 54 chr3 159148822 159149062 -450721 - RLTR10A LTR ERVK 0 411 140 1 1799 1322 161 112 4 chr3 159149146 159149473 -450310 - RLTR31_Mm LTR ERVK -213 348 1 1 1799 1539 219 10 77 chr3 159149473 159149954 -449829 + L1_Rod LINE L1 3953 4401 -1446 1 1799 201 39 0 0 chr3 159149976 159150002 -449781 + (TTA)n Simple_repeat Simple_repeat 2 27 0 1 1799 21 36 0 0 chr3 159150807 159150835 -448948 + AT_rich Low_complexity Low_complexity 1 28 0 1 1799 444 174 194 15 chr3 159150902 159151036 -448747 + L1MC1 LINE L1 5780 5937 -396 1 1799 390 74 0 0 chr3 159151222 159151276 -448507 + (TC)n Simple_repeat Simple_repeat 1 54 0 1 1799 234 0 0 0 chr3 159151278 159151304 -448479 + (TG)n Simple_repeat Simple_repeat 2 27 0 1 1799 232 281 99 106 chr3 159151526 159151568 -448215 - MER34A1 LTR ERV1 -416 171 130 1 1799 356 40 0 20 chr3 159151568 159151619 -448164 + (TTTTG)n Simple_repeat Simple_repeat 2 51 0 1 1799 232 281 99 106 chr3 159151619 159151705 -448078 - MER34A1 LTR ERV1 -458 129 43 1 1799 5681 83 10 38 chr3 159151705 159152531 -447252 - RLTR13B4 LTR ERVK 0 803 1 1 1799 232 281 99 106 chr3 159152531 159152552 -447231 - MER34A1 LTR ERV1 -545 42 22 1 1799 29 0 0 0 chr3 159153566 159153595 -446188 + AT_rich Low_complexity Low_complexity 1 29 0 1 1799 1099 169 0 0 chr3 159153595 159153779 -446004 + Lx2 LINE L1 6779 6962 -35 1 1799 396 0 0 0 chr3 159153817 159153861 -445922 + (TC)n Simple_repeat Simple_repeat 1 44 0 2 1799 351 0 0 0 chr3 159153861 159153899 -445884 + (CA)n Simple_repeat Simple_repeat 1 39 0 2 1799 1919 180 15 58 chr3 159153959 159154354 -445429 - ORR1C1 LTR MaLR 0 378 1 2 1799 1836 113 7 3 chr3 159154750 159155034 -444749 + Lx LINE L1 6370 6654 0 2 1799 875 265 121 18 chr3 159155169 159155442 -444341 + RMER15 LTR ERVL 275 575 0 2 1799 1060 304 83 15 chr3 159155442 159155571 -444212 + MTEb LTR MaLR 33 161 -218 2 1799 681 47 0 0 chr3 159155571 159155656 -444127 + (GGAA)n Simple_repeat Simple_repeat 4 88 0 2 1799 1060 304 83 15 chr3 159155656 159155850 -443933 + MTEb LTR MaLR 162 378 -1 2 1799 1055 290 93 15 chr3 159156031 159156644 -443139 + L1MEf LINE L1 1161 1821 -4379 2 1799 636 222 0 0 chr3 159157783 159157900 -441883 - RMER10A LTR ERVL -320 122 6 2 1799 288 0 0 0 chr3 159157900 159157932 -441851 + (TG)n Simple_repeat Simple_repeat 1 32 0 2 1799 897 118 0 0 chr3 159157932 159158100 -441683 + (GA)n Simple_repeat Simple_repeat 1 169 0 2 1799 181 339 161 0 chr3 159159069 159159181 -440602 + MIRc SINE MIR 120 249 -19 2 1799 184 370 74 0 chr3 159159201 159159282 -440501 - MIRc SINE MIR -119 149 63 2 1799 499 246 12 0 chr3 159160085 159160212 -439571 - B1_Mur2 SINE Alu -1 148 19 2 1799 425 232 97 9 chr3 159160422 159160535 -439248 - B1F SINE Alu -8 141 19 2 1799 1200 134 109 0 chr3 159160573 159160774 -439009 + URR1A DNA MER1_type 1 223 -3 2 1799 207 232 72 118 chr3 159160780 159160873 -438910 + MIR SINE MIR 78 175 -87 2 1799 310 211 0 0 chr3 159161202 159161259 -438524 - ID_B1 SINE B4 -5 219 163 2 1799 866 169 209 4 chr3 159161653 159161897 -437886 + Lx9 LINE L1 7351 7644 0 2 1799 8755 205 54 43 chr3 159162030 159164297 -435486 - Lx7 LINE L1 0 7696 5404 2 1799 15653 142 18 9 chr3 159164323 159168782 -431001 - Lx2 LINE L1 -2 6995 2510 2 1799 1680 190 56 5 chr3 159168783 159169174 -430609 - Lx7 LINE L1 -486 5394 4984 2 1799 227 175 15 45 chr3 159169173 159169239 -430544 - Lx7 LINE L1 -1673 6023 5960 2 1799 769 269 89 45 chr3 159169230 159169499 -430284 - Lx6 LINE L1 -117 7343 7063 2 1799 11347 166 56 9 chr3 159169499 159170545 -429238 - Lx7 LINE L1 -86 5794 4735 2 1799 495 87 0 0 chr3 159170545 159170614 -429169 + (TA)n Simple_repeat Simple_repeat 2 70 0 2 1799 11347 204 107 10 chr3 159170614 159173354 -426429 - Lx7 LINE L1 -1146 4734 1495 2 1799 459 0 0 0 chr3 159173356 159173407 -426376 + (TTTA)n Simple_repeat Simple_repeat 4 54 0 2 1799 404 152 14 140 chr3 159173407 159173557 -426226 - RMER17C LTR ERVK -136 274 152 2 1799 4405 6 0 24 chr3 159173557 159174062 -425721 - MT2_Mm LTR ERVL 0 493 1 2 1799 404 152 14 140 chr3 159174062 159174125 -425658 - RMER17C LTR ERVK -259 151 88 2 1799 2462 190 38 9 chr3 159174125 159175203 -424580 - Lx7 LINE L1 -4380 1500 318 2 1799 23 54 0 0 chr3 159175444 159175481 -424302 + AT_rich Low_complexity Low_complexity 1 37 0 2 1799 26 0 0 0 chr3 159175549 159175575 -424208 + AT_rich Low_complexity Low_complexity 1 26 0 2 1799 255 79 0 0 chr3 159176068 159176106 -423677 + (TTGG)n Simple_repeat Simple_repeat 2 39 0 2 1799 553 221 95 7 chr3 159176106 159176234 -423549 - B1_Mur4 SINE Alu -8 142 2 2 1799 1198 55 0 0 chr3 159176472 159176617 -423166 - B1_Mus2 SINE Alu -1 146 2 2 1799 3139 49 13 3 chr3 159176652 159177044 -422739 - MTA_Mm LTR MaLR 0 396 1 2 1799 1315 98 22 0 chr3 159177417 159177601 -422182 - B2_Mm2 SINE B2 -7 188 1 2 1799 222 37 0 0 chr3 159177621 159177648 -422135 + (TG)n Simple_repeat Simple_repeat 2 28 0 2 1799 361 256 0 0 chr3 159178289 159178379 -421404 + B4A SINE B4 202 291 -1 2 1799 202 292 0 122 chr3 159179350 159179432 -420351 - L2c LINE L2 -10 3377 3306 2 1799 213 39 0 0 chr3 159179786 159179812 -419971 + (TAAAA)n Simple_repeat Simple_repeat 2 27 0 2 1799 467 123 12 0 chr3 159179935 159180016 -419767 + (TG)n Simple_repeat Simple_repeat 2 83 0 2 1799 786 164 0 0 chr3 159180461 159180595 -419188 - RLTR11A2 LTR ERVK 0 527 394 2 1799 450 61 207 0 chr3 159180611 159180693 -419090 - B2_Mm1t SINE B2 0 193 95 2 1799 1817 163 60 44 chr3 159180697 159181082 -418701 - RLTR11A2 LTR ERVK -136 391 1 2 1799 21 0 0 0 chr3 159181162 159181183 -418600 + AT_rich Low_complexity Low_complexity 1 21 0 2 1799 777 149 22 0 chr3 159181687 159181821 -417962 + URR1B DNA MER1_type 89 225 0 2 1799 440 190 0 12 chr3 159182050 159182130 -417653 + B1_Mus2 SINE Alu 69 147 0 2 1799 1993 150 35 3 chr3 159182142 159182490 -417293 - RLTR15 LTR ERVK 0 359 1 2 1799 21 0 0 0 chr3 159183061 159183082 -416701 + AT_rich Low_complexity Low_complexity 1 21 0 2 1799 22 0 0 0 chr3 159183370 159183392 -416391 + AT_rich Low_complexity Low_complexity 1 22 0 2 1799 881 199 128 11 chr3 159183446 159183634 -416149 + B3 SINE B2 1 210 -6 2 1799 26 30 0 0 chr3 159184036 159184069 -415714 + AT_rich Low_complexity Low_complexity 1 33 0 2 1799 409 380 81 69 chr3 159184127 159184565 -415218 - MER21B LTR ERV1 -138 725 294 2 1799 207 0 0 0 chr3 159184565 159184588 -415195 + (TTG)n Simple_repeat Simple_repeat 2 24 0 2 1799 409 380 81 69 chr3 159184588 159184658 -415125 - MER21B LTR ERV1 -570 293 212 2 1799 288 284 15 0 chr3 159184744 159184811 -414972 - MER21B LTR ERV1 -778 85 18 2 1799 567 268 153 25 chr3 159184933 159185136 -414647 + MER2 DNA MER2_type 113 341 -4 2 1799 1363 244 33 0 chr3 159187016 159187319 -412464 - Lx8 LINE L1 -121 7352 7040 2 1799 405 0 0 0 chr3 159187362 159187407 -412376 + (TG)n Simple_repeat Simple_repeat 2 46 0 2 1799 36 23 0 0 chr3 159187514 159187557 -412226 + AT_rich Low_complexity Low_complexity 1 43 0 2 1799 549 0 0 0 chr3 159188271 159188332 -411451 + (TC)n Simple_repeat Simple_repeat 2 62 0 2 1799 459 0 0 0 chr3 159188332 159188382 -411401 + (TG)n Simple_repeat Simple_repeat 2 52 0 2 1799 23 68 0 0 chr3 159188879 159188923 -410860 + AT_rich Low_complexity Low_complexity 1 44 0 2 1799 441 303 41 0 chr3 159190006 159190128 -409655 - B4A SINE B4 -165 127 1 2 1799 396 62 0 0 chr3 159190264 159190328 -409455 - Lx3_Mus LINE L1 0 7009 6946 2 1799 29 78 0 0 chr3 159190565 159190629 -409154 + AT_rich Low_complexity Low_complexity 1 64 0 2 1799 26 30 0 0 chr3 159191264 159191297 -408486 + AT_rich Low_complexity Low_complexity 1 33 0 2 1799 252 79 0 73 chr3 159191710 159191778 -408005 + T-rich Low_complexity Low_complexity 3 65 0 2 1799 762 145 20 46 chr3 159191778 159191930 -407853 - B1_Mur3 SINE Alu 0 149 2 2 1799 423 282 0 18 chr3 159192581 159192693 -407090 - PB1D10 SINE Alu -7 110 1 2 1799 25 31 0 0 chr3 159193055 159193087 -406696 + AT_rich Low_complexity Low_complexity 1 32 0 2 1799 5279 126 48 42 chr3 159193087 159193964 -405819 - Lx4A LINE L1 -3 7055 6174 2 1799 1322 143 39 9 chr3 159193964 159194196 -405587 + Lx4A LINE L1 5930 6168 -890 2 1799 262 303 71 35 chr3 159194650 159194763 -405020 + MIR SINE MIR 64 180 -82 2 1799 2297 265 47 23 chr3 159195448 159196265 -403518 - Lx5 LINE L1 -17 7033 6455 2 1799 225 171 0 0 chr3 159196643 159196684 -403099 + MIRb SINE MIR 125 165 -103 2 1799 826 268 38 110 chr3 159196874 159197193 -402590 + RMER15 LTR ERVL 280 575 0 2 1799 709 278 61 0 chr3 159197251 159197449 -402334 + B3 SINE B2 2 211 -5 2 1799 377 270 139 56 chr3 159197873 159198089 -401694 + L1MEb LINE L1 649 882 -5188 2 1799 3244 154 134 11 chr3 159198276 159199054 -400729 - Lx5 LINE L1 -1127 5923 4988 2 1799 445 145 126 19 chr3 159199087 159199243 -400540 - Lx3A LINE L1 0 6981 6820 2 1799 463 212 136 56 chr3 159199248 159199373 -400410 - RMER3D-int LTR ERVK -2707 135 1 2 1799 2590 192 32 14 chr3 159199373 159200024 -399759 - RLTR31_Mm LTR ERVK 0 561 1 2 1799 1506 115 16 37 chr3 159200024 159200267 -399516 - Lx3A LINE L1 -451 6530 6293 2 1799 273 26 53 0 chr3 159200283 159200321 -399462 - Lx3A LINE L1 -133 6876 6837 2 1799 210 37 0 0 chr3 159200321 159200348 -399435 + (TTAGGG)n Simple_repeat Simple_repeat 2 28 0 2 1799 6798 102 7 7 chr3 159200348 159201874 -397909 - Lx3A LINE L1 -530 6451 4929 2 1799 1877 214 58 14 chr3 159201874 159202301 -397482 - RMER13B LTR ERVK 0 908 463 2 1799 2765 26 0 101 chr3 159202308 159202693 -397090 - ORR1A1 LTR MaLR 0 346 1 2 1799 6341 68 4 30 chr3 159202693 159203601 -396182 - ORR1A1-int LTR MaLR 0 1792 908 2 1799 2734 136 63 0 chr3 159203569 159203996 -395787 - RMER13B LTR ERVK -454 454 1 2 1799 8174 75 42 6 chr3 159203996 159204189 -395594 - L1_Mur1 LINE L1 -952 4934 4735 2 1799 222 37 0 0 chr3 159204189 159204216 -395567 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 2 1799 8174 75 42 6 chr3 159204216 159205226 -394557 - L1_Mur1 LINE L1 -1152 4734 3688 2 1799 1540 159 9 137 chr3 159205226 159205569 -394214 + ORR1B1 LTR MaLR 96 394 0 2 1799 518 181 0 0 chr3 159205569 159205663 -394120 - L1_Mur3 LINE L1 -1473 4404 4311 2 1799 1488 168 74 3 chr3 159205663 159205961 -393822 - L1_Mur3 LINE L1 -1816 4064 3746 2 1799 1997 169 16 43 chr3 159205963 159206334 -393449 + MTB_Mm LTR MaLR 1 361 -46 2 1799 285 136 72 43 chr3 159206341 159206410 -393373 + MTB_Mm LTR MaLR 337 407 0 2 1799 435 172 0 7 chr3 159206410 159206519 -393264 - L1_Mur3 LINE L1 -2134 3752 3652 2 1799 7634 196 47 111 chr3 159206524 159206634 -393149 - L1_Mur3 LINE L1 -2408 3472 3357 2 1799 5416 69 4 1 chr3 159206634 159207341 -392442 - L1_Mus3 LINE L1 -2 6636 5928 2 1799 7634 196 47 111 chr3 159207341 159208544 -391239 - L1_Mur3 LINE L1 -2524 3356 2115 2 1799 530 141 30 70 chr3 159208544 159208743 -391040 - RMER17C LTR ERVK -135 275 85 2 1799 7634 196 47 111 chr3 159208743 159208775 -391008 - L1_Mur3 LINE L1 -2524 2114 2080 2 1799 222 37 0 0 chr3 159208775 159208802 -390981 + (TGG)n Simple_repeat Simple_repeat 1 27 0 2 1799 288 0 0 0 chr3 159208807 159208839 -390944 + (TG)n Simple_repeat Simple_repeat 1 32 0 2 1799 7634 199 49 102 chr3 159208839 159209802 -389981 - L1_Mur3 LINE L1 -3805 2075 1101 2 1799 396 0 0 0 chr3 159209802 159209846 -389937 + (TG)n Simple_repeat Simple_repeat 1 44 0 2 1799 1600 221 65 13 chr3 159209846 159210091 -389692 - L1_Mur3 LINE L1 -6628 1100 844 2 1799 1331 55 22 6 chr3 159210380 159210562 -389221 + L1_Mus2 LINE L1 6381 6565 -1 2 1799 30 27 0 0 chr3 159210991 159211028 -388755 + AT_rich Low_complexity Low_complexity 1 37 0 2 1799 7089 91 25 7 chr3 159211912 159212917 -386866 + RLTR13D5 LTR ERVK 1 1023 0 2 1799 3328 254 59 21 chr3 159212973 159214125 -385658 + RMER1A Other Other 1 885 -145 2 1799 670 230 60 20 chr3 159214128 159214328 -385455 + L1_Mur3 LINE L1 5650 5857 -23 2 1799 1030 194 436 15 chr3 159214417 159214747 -385036 + L1_Mur3 LINE L1 5107 5575 -305 2 1799 36379 55 3 6 chr3 159214747 159219601 -380182 + Lx6 LINE L1 643 5589 -297 2 1799 8445 29 1 0 chr3 159219601 159220596 -379187 + L1Md_A LINE L1 5587 6582 0 2 1799 36379 202 37 29 chr3 159220596 159222253 -377530 + Lx6 LINE L1 5590 7242 -221 2 1799 4055 139 68 1 chr3 159222259 159222950 -376833 + L1VL2 LINE L1 89 825 -5510 2 1799 18280 84 6 7 chr3 159222959 159226311 -373472 + L1Md_F3 LINE L1 382 3730 -2153 3 1799 7681 37 4 4 chr3 159226311 159227393 -372390 + L1Md_F3 LINE L1 5472 6553 -31 3 1799 518 29 15 0 chr3 159227393 159227461 -372322 + (TA)n Simple_repeat Simple_repeat 1 69 0 3 1799 8819 89 17 7 chr3 159227463 159228921 -370862 + L1VL4 LINE L1 768 2255 -1304 3 1799 6631 86 15 0 chr3 159228920 159230087 -369696 + L1VL1 LINE L1 189 1375 -2323 3 1799 2467 121 5 3 chr3 159230088 159230586 -369197 + L1Md_F LINE L1 632 1128 -5596 3 1799 9219 46 2 22 chr3 159230586 159231857 -367926 + L1Md_F LINE L1 2913 4158 -1725 3 1799 5586 62 1 3 chr3 159231848 159232586 -367197 + L1Md_F2 LINE L1 5826 6562 -20 3 1799 423 0 0 0 chr3 159232587 159232634 -367149 + (GA)n Simple_repeat Simple_repeat 2 48 0 3 1799 9491 105 11 1 chr3 159232634 159234137 -365646 + L1_Mus1 LINE L1 1589 3107 -2776 3 1799 10771 88 10 3 chr3 159234124 159236399 -363384 + L1_Mus1 LINE L1 4275 6563 -4 3 1799 37 0 0 0 chr3 159236412 159236449 -363334 + AT_rich Low_complexity Low_complexity 1 37 0 3 1799 652 93 9 0 chr3 159236449 159236557 -363226 + L1VL1 LINE L1 2392 2500 -1198 3 1799 9332 205 30 117 chr3 159236566 159236807 -362976 + Lx LINE L1 2630 2869 -3017 3 1799 873 54 0 0 chr3 159236807 159236918 -362865 + (GAAA)n Simple_repeat Simple_repeat 4 114 0 3 1799 9332 180 22 89 chr3 159236918 159241022 -358761 + Lx LINE L1 2870 6653 -1 3 1799 22 35 0 0 chr3 159241037 159241066 -358717 + AT_rich Low_complexity Low_complexity 1 29 0 3 1799 4972 68 25 8 chr3 159241113 159241782 -358001 - L1Md_F2 LINE L1 0 6582 5902 3 1799 296 318 105 8 chr3 159242688 159242821 -356962 + RSINE1 SINE B4 3 148 -17 3 1799 195 189 0 0 chr3 159242846 159242899 -356884 + (TCTCTG)n Simple_repeat Simple_repeat 6 58 0 3 1799 330 80 0 0 chr3 159242899 159242949 -356834 + (CA)n Simple_repeat Simple_repeat 1 50 0 3 1799 841 293 43 31 chr3 159243060 159243317 -356466 + MER2 DNA MER2_type 86 345 0 3 1799 389 331 79 16 chr3 159243542 159243732 -356051 + MLT1D LTR MaLR 7 208 -297 3 1799 1774 147 81 19 chr3 159244296 159244656 -355127 - Lx2B LINE L1 -2 6998 6617 3 1799 1261 142 67 37 chr3 159244669 159244968 -354815 - Lx2B LINE L1 -647 6353 6046 3 1799 192 299 27 6 chr3 159244973 159245078 -354705 + MIRc SINE MIR 97 203 -5 3 1799 962 89 7 13 chr3 159245751 159245906 -353877 - Lx3B LINE L1 -142 6916 6672 3 1799 559 115 43 17 chr3 159245906 159246021 -353762 + Lx3B LINE L1 6852 6969 -4 3 1799 21 0 0 0 chr3 159246865 159246886 -352897 + AT_rich Low_complexity Low_complexity 1 21 0 3 1799 22 35 0 0 chr3 159247119 159247148 -352635 + AT_rich Low_complexity Low_complexity 1 29 0 3 1799 386 292 65 156 chr3 159247201 159247477 -352306 - ORR1E LTR MaLR -19 340 90 3 1799 247 284 37 12 chr3 159247537 159247619 -352164 - ORR1E LTR MaLR -286 88 5 3 1799 23 68 0 0 chr3 159247627 159247671 -352112 + AT_rich Low_complexity Low_complexity 1 44 0 3 1799 333 0 0 0 chr3 159248018 159248055 -351728 + (TC)n Simple_repeat Simple_repeat 1 37 0 3 1799 378 143 0 0 chr3 159248055 159248118 -351665 + (CA)n Simple_repeat Simple_repeat 2 64 0 3 1799 470 317 70 21 chr3 159248538 159248680 -351103 - B1_Mur1 SINE Alu 0 149 1 3 1799 385 307 49 80 chr3 159248543 159248706 -351077 - ID_B1 SINE B4 -2 222 65 3 1799 258 56 0 0 chr3 159248790 159248826 -350957 + (T)n Simple_repeat Simple_repeat 1 36 0 3 1799 8658 108 21 9 chr3 159248849 159250436 -349347 - Lx3_Mus LINE L1 -1 7008 5401 3 1799 782 217 165 21 chr3 159250563 159250751 -349032 - B3 SINE B2 0 216 2 3 1799 4134 81 14 34 chr3 159250779 159251369 -348414 - L1_Mus2 LINE L1 0 6566 5989 3 1799 592 100 22 0 chr3 159251373 159251463 -348320 - L1_Mus2 LINE L1 -335 5548 5457 3 224 7480 56 3 3 chr3 159251458 159252491 -347292 + L1_Mus2 LINE L1 5533 6565 -1 3 1800 2673 156 16 56 chr3 159252518 159253561 -346222 - L1Md_F LINE L1 -2399 1418 412 3 1800 349 254 109 4 chr3 159253794 159254023 -345760 + L1MEc LINE L1 647 899 -5501 3 1800 796 150 7 43 chr3 159254046 159254185 -345598 + B1_Mur4 SINE Alu 11 144 -6 3 1800 4116 167 5 0 chr3 159254190 159254952 -344831 - Lx LINE L1 -338 5545 4780 3 1800 6517 114 28 8 chr3 159254949 159256046 -343737 + Lx LINE L1 5534 6651 -3 3 1800 25 0 0 0 chr3 159256047 159256072 -343711 + AT_rich Low_complexity Low_complexity 1 25 0 3 1800 1501 42 5 0 chr3 159256133 159256323 -343460 + L1_Mus2 LINE L1 6373 6563 -3 3 1800 438 227 116 32 chr3 159256364 159256519 -343264 + L1MEc LINE L1 4178 4345 -1974 3 1800 2771 24 158 5 chr3 159256519 159256892 -342891 + MT2_Mm LTR ERVL 1 430 -63 3 1800 235 224 92 68 chr3 159256892 159257055 -342728 + L1M4 LINE L1 4179 4345 -1801 3 1800 250 294 29 0 chr3 159258840 159258908 -340875 + ID4 SINE ID 1 70 -13 3 1800 423 0 0 0 chr3 159259040 159259087 -340696 + (TG)n Simple_repeat Simple_repeat 1 47 0 3 1800 272 307 107 0 chr3 159259097 159259172 -340611 - ID4_ SINE ID 0 83 1 3 1800 231 146 0 0 chr3 159259965 159260006 -339777 + (TTTC)n Simple_repeat Simple_repeat 2 42 0 3 1800 2002 207 20 22 chr3 159260377 159260777 -339006 - MTD LTR MaLR -12 407 9 3 1800 240 346 90 36 chr3 159260949 159261060 -338723 - MLT1N2 LTR MaLR -11 551 435 3 1800 267 287 40 146 chr3 159262398 159262651 -337132 + MIRc SINE MIR 27 252 -16 3 1800 347 271 231 9 chr3 159264181 159264289 -335494 + B1_Mur1 SINE Alu 12 143 -6 3 1800 254 269 137 124 chr3 159265109 159265270 -334513 + RSINE1 SINE B4 2 164 -1 3 1800 838 230 26 36 chr3 159265425 159265619 -334164 + B3 SINE B2 16 207 -9 3 1800 26 74 0 0 chr3 159266051 159266105 -333678 + AT_rich Low_complexity Low_complexity 1 54 0 3 1800 649 223 215 11 chr3 159266194 159266373 -333410 - MTD LTR MaLR 0 419 202 3 1800 1317 11 5 27 chr3 159266373 159266557 -333226 + (TTC)n Simple_repeat Simple_repeat 1 180 0 3 1800 228 67 0 0 chr3 159266577 159266607 -333176 + (TCC)n Simple_repeat Simple_repeat 1 30 0 3 1800 961 217 39 25 chr3 159266692 159266895 -332888 - B3 SINE B2 -8 208 3 3 1800 774 239 68 21 chr3 159266896 159267088 -332695 - MTD LTR MaLR -209 210 10 3 1800 195 319 21 52 chr3 159267856 159267952 -331831 - L2c LINE L2 0 3387 3295 3 1800 1092 87 0 0 chr3 159268006 159268144 -331639 + B1_Mm SINE Alu 1 138 -9 3 1800 240 35 0 0 chr3 159268163 159268192 -331591 + (CAAA)n Simple_repeat Simple_repeat 4 32 0 3 1800 231 407 68 0 chr3 159268746 159268864 -330919 - MER20B DNA MER1_type -601 182 57 3 1800 1292 48 0 6 chr3 159269787 159269956 -329827 - L1Md_F2 LINE L1 -12 6570 6403 3 1800 33633 67 4 4 chr3 159269957 159271411 -328372 - L1Md_F2 LINE L1 -385 6197 4745 3 1800 4172 25 4 0 chr3 159271411 159271891 -327892 - LTRIS_Mm LTR ERV1 0 482 1 3 1800 33633 75 5 5 chr3 159271891 159276051 -323732 - L1Md_F2 LINE L1 -1139 4744 631 3 1800 1201 80 6 6 chr3 159276839 159277015 -322768 + (GAA)n Simple_repeat Simple_repeat 1 176 0 3 1800 321 89 0 0 chr3 159277016 159277061 -322722 + (GGA)n Simple_repeat Simple_repeat 1 45 0 3 1800 565 101 0 0 chr3 159278318 159278397 -321386 + BC1_Mm scRNA scRNA 19 97 -55 3 1800 386 221 39 0 chr3 159278395 159278472 -321311 + PB1D10 SINE Alu 27 106 -11 3 1800 550 257 86 0 chr3 159278397 159278458 -321325 + ID_B1 SINE B4 19 170 -54 3 1800 406 335 84 11 chr3 159278698 159278876 -320907 - MIR3 SINE MIR -4 204 14 3 1800 249 311 114 91 chr3 159279112 159279331 -320452 - LTR48 LTR ERV1 -33 754 531 3 1800 1093 50 0 0 chr3 159279537 159279677 -320106 + L1_Mus1 LINE L1 6428 6567 0 3 1800 4146 45 4 0 chr3 159279896 159280401 -319382 + L1Md_F2 LINE L1 6064 6570 -12 3 1800 300 167 0 0 chr3 159280407 159280479 -319304 + A-rich Low_complexity Low_complexity 1 72 0 3 1800 1157 55 14 0 chr3 159280489 159280634 -319149 + B1_Mm SINE Alu 1 147 0 3 1800 3205 161 9 6 chr3 159281306 159281832 -317951 - RLTR12B LTR ERVK 0 528 1 3 1800 423 366 142 22 chr3 159281870 159282333 -317450 + L2a LINE L2 1056 1574 -1845 3 1800 257 337 56 112 chr3 159282820 159283141 -316642 + L2a LINE L2 2655 2957 -462 3 1800 231 360 112 32 chr3 159283176 159283426 -316357 + L2a LINE L2 3050 3319 -107 3 1800 378 0 0 0 chr3 159283501 159283543 -316240 + (TG)n Simple_repeat Simple_repeat 2 43 0 3 1800 363 272 94 14 chr3 159283894 159284032 -315751 + MIRb SINE MIR 84 232 -36 3 1800 399 98 0 0 chr3 159284878 159284939 -314844 + (CA)n Simple_repeat Simple_repeat 2 62 0 3 1800 202 388 10 39 chr3 159284940 159285042 -314741 + L2b LINE L2 3276 3374 -1 3 1800 297 0 0 0 chr3 159285417 159285450 -314333 + (TTG)n Simple_repeat Simple_repeat 2 34 0 3 1800 808 278 14 0 chr3 159286583 159286792 -312991 + B3 SINE B2 5 216 0 3 1800 985 115 0 51 chr3 159287268 159287424 -312359 + B1_Mus1 SINE Alu 1 148 0 3 1800 200 31 0 59 chr3 159287424 159287458 -312325 + (CAAAAA)n Simple_repeat Simple_repeat 5 36 0 3 1800 599 300 13 7 chr3 159287773 159287924 -311859 + RSINE1 SINE B4 4 155 -10 3 1800 28 29 0 0 chr3 159287924 159287959 -311824 + AT_rich Low_complexity Low_complexity 1 35 0 3 1800 267 31 0 0 chr3 159288051 159288083 -311700 + (T)n Simple_repeat Simple_repeat 1 32 0 3 1800 971 188 16 0 chr3 159288083 159288275 -311508 + B2_Mm2 SINE B2 1 195 0 3 1800 24 32 0 0 chr3 159288429 159288460 -311323 + AT_rich Low_complexity Low_complexity 1 31 0 3 1800 22090 168 15 8 chr3 159288493 159291015 -308768 - L1_Mus3 LINE L1 -1397 5661 3136 3 1800 1177 61 0 0 chr3 159291015 159291162 -308621 - B1_Mus2 SINE Alu 0 147 1 3 1800 22090 171 38 20 chr3 159291162 159293685 -306098 - L1_Mus3 LINE L1 -2751 3135 551 3 1800 240 345 0 43 chr3 159293748 159293842 -305941 - B3A SINE B2 -16 182 93 3 1800 1002 239 0 48 chr3 159293997 159294226 -305557 - RLTR14 LTR ERV1 0 382 165 3 1800 1003 249 256 53 chr3 159294231 159294699 -305084 - RMER2 LTR ERV1 -4 563 1 3 1800 697 148 26 60 chr3 159294701 159294852 -304931 - RLTR14 LTR ERV1 -227 155 10 3 1800 201 132 0 0 chr3 159294951 159294989 -304794 + (A)n Simple_repeat Simple_repeat 1 38 0 3 1800 317 204 75 54 chr3 159295001 159295094 -304689 - B1_Mur2 SINE Alu -45 104 10 3 1800 438 20 0 0 chr3 159295136 159295187 -304596 + (TC)n Simple_repeat Simple_repeat 2 52 0 3 1800 211 268 28 14 chr3 159295316 159295388 -304395 - B1_Mus1 SINE Alu -74 74 2 3 1800 618 175 75 0 chr3 159295430 159295550 -304233 - B1_Mur4 SINE Alu 0 150 22 3 1800 1263 130 16 0 chr3 159295553 159295745 -304038 - B2_Mm2 SINE B2 0 195 1 3 1800 424 301 89 0 chr3 159295899 159296022 -303761 - ID_B1 SINE B4 -8 216 83 4 1800 3485 193 92 60 chr3 159296303 159297165 -302618 - RMER19B LTR ERVK -6 896 8 4 1800 216 0 0 0 chr3 159297181 159297205 -302578 + (T)n Simple_repeat Simple_repeat 1 24 0 4 1800 700 200 20 40 chr3 159297207 159297358 -302425 - B1_Mur4 SINE Alu -1 149 2 4 1800 34686 68 2 1 chr3 159297518 159303708 -296075 - L1Md_F3 LINE L1 -1 6583 446 4 1800 216 0 0 0 chr3 159304306 159304330 -295453 + (A)n Simple_repeat Simple_repeat 1 24 0 4 1800 1160 20 0 20 chr3 159305305 159305456 -294327 - L1Md_F2 LINE L1 -10 6572 6425 4 1800 1012 125 0 0 chr3 159305810 159305954 -293829 - B1_Mus1 SINE Alu -4 144 1 4 1800 276 111 0 0 chr3 159305967 159306012 -293771 + (TG)n Simple_repeat Simple_repeat 2 46 0 4 1800 245 103 0 0 chr3 159306228 159306267 -293516 - L1_Mus3 LINE L1 -828 5810 5772 4 1800 676 176 13 13 chr3 159306470 159306625 -293158 + GA-rich Low_complexity Low_complexity 3 157 0 4 1800 23 33 0 0 chr3 159306923 159306953 -292830 + AT_rich Low_complexity Low_complexity 1 30 0 4 1800 180 357 43 92 chr3 159307642 159307827 -291956 - L2 LINE L2 -3183 236 61 4 1800 185 306 0 16 chr3 159307937 159308000 -291783 - MIR SINE MIR -33 229 168 4 1800 343 198 58 112 chr3 159308195 159308383 -291400 + Lx9 LINE L1 7466 7643 -1 4 1800 522 38 37 12 chr3 159308424 159308505 -291278 + (GAAA)n Simple_repeat Simple_repeat 4 86 0 4 1800 1080 81 0 0 chr3 159308505 159308653 -291130 + (GAGAA)n Simple_repeat Simple_repeat 4 151 0 4 1800 528 354 10 30 chr3 159308973 159309096 -290687 - RMER30 DNA MER1_type -1 201 82 4 1800 237 33 0 0 chr3 159309096 159309126 -290657 + (TG)n Simple_repeat Simple_repeat 2 31 0 4 1800 528 354 10 30 chr3 159309126 159309200 -290583 - RMER30 DNA MER1_type -121 81 8 4 1800 396 138 0 0 chr3 159309228 159309293 -290490 + (TA)n Simple_repeat Simple_repeat 2 66 0 4 1800 252 300 0 16 chr3 159309558 159309619 -290164 - MIRc SINE MIR -118 150 91 4 1800 1238 112 53 0 chr3 159309867 159310055 -289728 - Lx2 LINE L1 -409 6588 6391 4 1800 2643 122 8 0 chr3 159310065 159310466 -289317 + Lx2 LINE L1 6578 6981 -16 4 1800 1875 177 54 9 chr3 159310618 159310949 -288834 - ORR1B1 LTR MaLR -8 386 41 4 1800 25 0 0 0 chr3 159310963 159310988 -288795 + AT_rich Low_complexity Low_complexity 1 25 0 4 1800 1898 147 18 62 chr3 159311086 159311427 -288356 + ORR1A3 LTR MaLR 1 326 0 4 1800 537 306 7 20 chr3 159311456 159311606 -288177 - ID_B1 SINE B4 0 224 77 4 1800 35 83 0 0 chr3 159311800 159311884 -287899 + AT_rich Low_complexity Low_complexity 1 84 0 4 1800 476 309 53 0 chr3 159312509 159312661 -287122 - ID_B1 SINE B4 -6 218 59 4 1800 7496 87 2 9 chr3 159313025 159314822 -284961 + L1_Mus1 LINE L1 4823 6567 0 4 1800 286 300 0 0 chr3 159314870 159314940 -284843 - L2a LINE L2 0 3426 3357 4 1800 191 358 63 50 chr3 159315434 159315593 -284190 + MIRc SINE MIR 39 199 -69 4 1800 1557 251 32 16 chr3 159315750 159316123 -283660 - MTEa LTR MaLR 0 379 1 4 1800 304 346 12 0 chr3 159316227 159316246 -283537 - ID4 SINE ID 0 83 29 4 1800 307 254 0 0 chr3 159316246 159316301 -283482 - tRNA-Ala-GCY_ tRNA tRNA -18 57 3 4 1800 284 303 26 13 chr3 159316404 159316481 -283302 - B4A SINE B4 -209 83 6 4 1800 240 59 0 0 chr3 159316502 159316536 -283247 + (GGTTG)n Simple_repeat Simple_repeat 5 38 0 4 1800 353 254 14 25 chr3 159316536 159316625 -283158 - B1F SINE Alu -6 143 53 4 1800 247 333 164 37 chr3 159316625 159316670 -283113 - ID_B1 SINE B4 -7 217 67 4 1800 1149 88 0 0 chr3 159317050 159317198 -282585 + B1_Mus1 SINE Alu 1 148 0 4 1800 33914 46 3 4 chr3 159317202 159322644 -277139 + L1Md_T LINE L1 58 5589 -297 4 1800 8555 29 0 0 chr3 159322644 159323701 -276082 + L1Md_T LINE L1 5590 6585 0 4 1800 495 280 9 0 chr3 159324451 159324558 -275225 + RSINE1 SINE B4 1 108 -57 4 1800 288 0 0 0 chr3 159324593 159324625 -275158 + (CA)n Simple_repeat Simple_repeat 2 33 0 4 1800 383 294 0 19 chr3 159325001 159325105 -274678 - Lx9 LINE L1 -412 7232 7131 4 1800 236 211 77 0 chr3 159325107 159325159 -274624 + LTR41 LTR ERVL 559 614 -154 4 1800 636 236 98 0 chr3 159325174 159325348 -274435 - Lx8 LINE L1 -409 7064 6874 4 1800 694 298 20 35 chr3 159325385 159325639 -274144 - Lx8 LINE L1 -589 6884 6635 4 1800 1547 223 40 58 chr3 159325650 159326026 -273757 + ORR1D1 LTR MaLR 6 374 0 4 1800 955 339 107 56 chr3 159327222 159327828 -271955 + MER21B LTR ERV1 98 734 -129 4 1800 240 322 88 32 chr3 159329134 159329259 -270524 + MIRm SINE MIR 19 150 -126 4 1800 1282 268 92 57 chr3 159329836 159330483 -269300 + RMER13A LTR ERVK 1 726 -134 4 1800 23 33 0 0 chr3 159330604 159330634 -269149 + AT_rich Low_complexity Low_complexity 1 30 0 4 1800 25 0 0 0 chr3 159330899 159330924 -268859 + AT_rich Low_complexity Low_complexity 1 25 0 4 1800 36047 46 4 4 chr3 159331722 159338377 -261406 - L1Md_T LINE L1 0 6585 1 4 1800 1658 210 113 8 chr3 159338579 159338958 -260825 - MTD LTR MaLR 0 419 1 4 1800 3785 206 41 9 chr3 159338994 159339745 -260038 - Lx5 LINE L1 -6 7044 6270 4 1800 510 301 68 0 chr3 159340619 159340765 -259018 - MER20 DNA MER1_type -63 156 1 4 1800 857 257 244 10 chr3 159340854 159341161 -258622 + MTEa LTR MaLR 1 379 0 4 1800 213 39 0 0 chr3 159341333 159341359 -258424 + (TTGG)n Simple_repeat Simple_repeat 2 27 0 4 1800 597 150 0 48 chr3 159341391 159341496 -258287 - B1_Mur3 SINE Alu -8 141 42 4 1800 423 237 0 0 chr3 159341535 159341649 -258134 + (TA)n Simple_repeat Simple_repeat 2 115 0 4 1800 830 285 64 72 chr3 159341704 159342178 -257605 - MT2B LTR ERVL -40 561 1 4 1800 251 222 0 0 chr3 159342179 159342224 -257559 - B1_Mus1 SINE Alu -102 46 2 4 1800 233 263 35 0 chr3 159342230 159342287 -257496 - PB1D10 SINE Alu -1 116 58 4 1800 488 191 28 72 chr3 159342307 159342488 -257295 - Lx9 LINE L1 -7 7637 7465 4 1800 7682 115 8 11 chr3 159342569 159344285 -255498 + L1VL4 LINE L1 346 2055 -1504 4 1800 2643 153 20 12 chr3 159344282 159344785 -254998 + L1_Mur1 LINE L1 4035 4541 -1336 4 1800 4584 173 13 174 chr3 159345180 159346331 -253452 + L1_Mur1 LINE L1 4538 5474 -412 4 1800 1759 70 0 28 chr3 159346331 159346582 -253201 + L1Md_F2 LINE L1 6338 6581 -1 4 1800 4584 173 13 174 chr3 159346582 159346904 -252879 + L1_Mur1 LINE L1 5475 5773 -113 4 1800 3941 96 10 2 chr3 159346920 159347496 -252287 + Lx3C LINE L1 6239 6819 -157 4 1800 2661 98 21 40 chr3 159347496 159347976 -251807 - RMER17A LTR ERVK 0 751 281 4 1800 4076 135 41 107 chr3 159348088 159348771 -251012 + RMER19A LTR ERVK 3 627 -110 4 1800 1416 84 16 0 chr3 159348771 159348962 -250821 - B2_Mm2 SINE B2 -1 194 1 4 1800 4076 135 41 107 chr3 159348962 159349065 -250718 + RMER19A LTR ERVK 628 737 0 4 1800 574 49 24 0 chr3 159349827 159349909 -249874 + (GA)n Simple_repeat Simple_repeat 1 84 0 4 1800 1065 97 65 0 chr3 159350304 159350458 -249325 - B2_Mm2 SINE B2 -30 165 2 4 1800 1040 255 15 0 chr3 159350543 159350747 -249036 + B3 SINE B2 4 210 -6 4 1800 214 29 0 54 chr3 159350847 159350884 -248899 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 4 1800 314 333 0 0 chr3 159350984 159351068 -248715 + MTEa LTR MaLR 5 88 -291 4 1800 754 311 0 5 chr3 159351211 159351402 -248381 + MT2A LTR ERVL 264 453 -80 4 1800 279 278 102 0 chr3 159351423 159351531 -248252 + MLT2B4 LTR ERVL 432 550 -6 4 1800 2526 83 8 26 chr3 159351895 159352278 -247505 + L1_Mus2 LINE L1 6191 6566 0 4 1800 249 209 0 29 chr3 159352503 159352572 -247211 + L1MEd LINE L1 965 1031 -5088 4 1800 501 283 0 28 chr3 159352576 159352685 -247098 + PB1D10 SINE Alu 4 109 -8 4 1800 238 222 0 0 chr3 159353428 159353473 -246310 - ID4_ SINE ID -37 46 2 4 1800 337 281 22 0 chr3 159353478 159353567 -246216 - MER58A DNA MER1_type -90 134 44 4 1800 329 261 168 48 chr3 159353594 159353935 -245848 - RMER17B LTR ERVK -529 429 15 4 1800 851 255 31 85 chr3 159354107 159354203 -245580 + Lx7 LINE L1 5504 5630 -2066 4 1800 1198 74 0 0 chr3 159354203 159354351 -245432 + B1_Mus1 SINE Alu 1 148 0 4 1800 851 258 33 84 chr3 159354351 159354645 -245138 + Lx7 LINE L1 5631 5908 -1788 4 1800 21 36 0 0 chr3 159355044 159355072 -244711 + AT_rich Low_complexity Low_complexity 1 28 0 4 1800 18444 71 9 2 chr3 159355112 159358414 -241369 - L1Md_F2 LINE L1 -1 6581 3254 4 1800 34600 40 2 0 chr3 159358422 159363690 -236093 - L1Md_A LINE L1 0 6582 1304 4 1800 6613 19 0 0 chr3 159363690 159364442 -235341 - L1Md_A LINE L1 0 6582 5831 4 1800 16186 10 1 0 chr3 159364442 159366373 -233410 + L1_Mm LINE L1 3634 5566 -317 4 1800 5064 117 60 0 chr3 159366364 159367250 -232533 - L1Md_A LINE L1 -5407 1317 379 4 1800 386 211 115 10 chr3 159367914 159368010 -231773 + PB1D10 SINE Alu 12 117 0 4 1800 203 146 24 0 chr3 159368010 159368051 -231732 + GA-rich Low_complexity Low_complexity 2 43 0 4 1800 240 396 90 17 chr3 159368952 159369129 -230654 - LTR16B1 LTR ERVL -160 320 131 4 1800 1330 304 35 24 chr3 159369214 159369675 -230108 - Lx7 LINE L1 -455 7241 6776 4 1800 786 61 34 7 chr3 159369823 159369971 -229812 + (TAGA)n Simple_repeat Simple_repeat 1 152 0 4 1800 1020 90 88 28 chr3 159369973 159370155 -229628 + RMER17C LTR ERVK 218 410 0 4 1800 295 297 8 59 chr3 159370480 159370598 -229185 - PB1D10 SINE Alu -5 112 1 4 1800 304 194 97 0 chr3 159370883 159370945 -228838 + RLTR14 LTR ERV1 315 382 0 4 1800 259 213 211 11 chr3 159371872 159371967 -227816 + MTEa LTR MaLR 262 375 -4 4 1800 522 0 0 0 chr3 159372029 159372087 -227696 + (TC)n Simple_repeat Simple_repeat 2 59 0 4 1800 219 69 0 0 chr3 159372087 159372115 -227668 + (TG)n Simple_repeat Simple_repeat 2 30 0 5 1800 664 167 190 34 chr3 159372129 159372188 -227595 + Lx7 LINE L1 7460 7513 -183 5 1800 558 0 0 0 chr3 159372188 159372250 -227533 + (ATTTG)n Simple_repeat Simple_repeat 3 64 0 5 1800 664 167 190 34 chr3 159372250 159372395 -227388 + Lx7 LINE L1 7514 7695 -1 5 1800 4135 192 1 23 chr3 159372592 159373331 -226452 - Lx5 LINE L1 0 7050 6328 5 1800 3774 164 55 1 chr3 159373351 159374054 -225729 + Lx5 LINE L1 5587 6327 -723 5 1800 8143 154 37 40 chr3 159374087 159375254 -224529 + RLTR21 LTR ERVK 1 1188 -384 5 1800 360 0 0 0 chr3 159375254 159375294 -224489 + (TG)n Simple_repeat Simple_repeat 2 41 0 5 1800 8143 154 37 40 chr3 159375294 159375667 -224116 + RLTR21 LTR ERVK 1189 1536 -36 5 1800 3966 169 56 30 chr3 159375667 159376475 -223308 + RMER12 LTR ERVK 4 834 -488 5 1800 582 15 0 0 chr3 159376475 159376542 -223241 + (TG)n Simple_repeat Simple_repeat 2 68 0 5 1800 3966 169 56 30 chr3 159376542 159376560 -223223 + RMER12 LTR ERVK 835 851 -471 5 1800 918 294 43 33 chr3 159376557 159376856 -222927 + RMER12 LTR ERVK 1021 1322 0 5 1800 272 167 21 0 chr3 159376856 159376899 -222884 + RLTR21 LTR ERVK 1529 1572 0 5 1800 409 274 70 9 chr3 159376899 159377004 -222779 - ID_B1 SINE B4 -32 192 81 5 1800 492 176 104 71 chr3 159377025 159377208 -222575 - L1_Mur3 LINE L1 -4070 1810 1622 5 1800 2675 25 71 0 chr3 159377210 159377533 -222250 - ORR1A0 LTR MaLR 0 346 1 5 1800 12002 54 14 1 chr3 159377533 159379120 -220663 - ORR1A0-int LTR MaLR 0 1792 184 5 3 33600 70 1 13 chr3 159379121 159385249 -214534 + L1Md_F2 LINE L1 517 6562 -20 5 1801 411 21 0 0 chr3 159385250 159385298 -214485 + (TA)n Simple_repeat Simple_repeat 2 49 0 5 1801 1426 81 0 0 chr3 159385321 159385518 -214265 - ORR1A0-int LTR MaLR -1593 199 3 5 1801 3060 20 0 0 chr3 159385519 159385865 -213918 - ORR1A0 LTR MaLR 0 346 1 5 1801 827 165 108 5 chr3 159385866 159386061 -213722 - L1_Mur3 LINE L1 -4257 1623 1409 5 1801 864 113 0 0 chr3 159386069 159386193 -213590 - L1_Mm LINE L1 -229 5654 5531 5 1801 1489 199 12 6 chr3 159386194 159386596 -213187 - L1_Mur3 LINE L1 -4495 1385 984 5 1801 335 146 0 0 chr3 159386826 159386874 -212909 + B3 SINE B2 68 115 -101 5 1801 333 0 0 0 chr3 159386917 159386954 -212829 + (CA)n Simple_repeat Simple_repeat 2 38 0 5 1801 478 259 52 7 chr3 159386989 159387159 -212624 + B3A SINE B2 1 183 -10 5 1801 1595 64 0 0 chr3 159387399 159387602 -212181 + L1_Mus1 LINE L1 6361 6563 -4 5 1801 201 233 0 0 chr3 159387603 159387646 -212137 + GA-rich Low_complexity Low_complexity 2 44 0 5 1801 306 279 91 49 chr3 159388448 159388591 -211192 + MER34A LTR ERV1 423 571 0 5 1801 205 105 79 0 chr3 159388635 159388673 -211110 + A-rich Low_complexity Low_complexity 2 42 0 5 1801 244 281 0 35 chr3 159389185 159389270 -210513 + CT-rich Low_complexity Low_complexity 1 82 0 5 1801 1825 155 52 55 chr3 159389634 159390017 -209766 + ORR1C2 LTR MaLR 3 384 0 5 1801 288 77 0 0 chr3 159390136 159390175 -209608 + (TATG)n Simple_repeat Simple_repeat 4 42 0 5 1801 1240 243 13 20 chr3 159390179 159390477 -209306 - Lx5 LINE L1 -31 7019 6724 5 1801 10862 167 94 26 chr3 159390474 159391513 -208270 - L1_Mur3 LINE L1 -553 5324 4264 5 1801 522 0 0 0 chr3 159391513 159391571 -208212 + (TA)n Simple_repeat Simple_repeat 1 58 0 5 1801 10862 167 94 26 chr3 159391571 159392023 -207760 - L1_Mur3 LINE L1 -1614 4263 3710 5 1801 1231 108 62 0 chr3 159392023 159392199 -207584 - B2_Mm2 SINE B2 -8 187 1 5 1801 10862 167 94 26 chr3 159392199 159392442 -207341 - L1_Mur3 LINE L1 -2168 3709 3471 5 1801 369 62 0 0 chr3 159392442 159392490 -207293 + (TTGG)n Simple_repeat Simple_repeat 1 48 0 5 1801 10862 167 94 26 chr3 159392490 159392691 -207092 - L1_Mur3 LINE L1 -2407 3470 3236 5 1801 1251 217 101 73 chr3 159392691 159392907 -206876 - RMER17C LTR ERVK -2 408 180 5 1801 648 70 0 0 chr3 159392907 159392993 -206790 + (GGGGA)n Simple_repeat Simple_repeat 1 86 0 5 1801 1251 217 101 73 chr3 159392993 159393173 -206610 - RMER17C LTR ERVK -231 179 1 5 1801 10862 167 94 26 chr3 159393173 159393734 -206049 - L1_Mur3 LINE L1 -2642 3235 2654 5 1801 1508 160 142 16 chr3 159393766 159394146 -205637 - L1_Mur3 LINE L1 -4229 1648 1221 5 1801 635 231 21 98 chr3 159394156 159394346 -205437 - L1_Mur3 LINE L1 -6618 1110 925 5 1801 315 0 0 0 chr3 159394346 159394381 -205402 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 5 1801 635 231 21 98 chr3 159394381 159394425 -205358 - L1_Mur3 LINE L1 -6804 924 894 5 1801 244 280 53 0 chr3 159395154 159395229 -204554 + MamRep434 DNA TcMar 344 422 -4 5 1801 216 238 16 16 chr3 159395587 159395651 -204132 + T-rich Low_complexity Low_complexity 3 66 0 5 1801 263 325 0 0 chr3 159395803 159395880 -203903 + ID4_ SINE ID 3 79 -4 5 1801 791 138 7 0 chr3 159395881 159396019 -203764 + (GGAA)n Simple_repeat Simple_repeat 1 139 0 5 1801 216 0 0 0 chr3 159396687 159396711 -203072 + (A)n Simple_repeat Simple_repeat 1 24 0 5 1801 295 286 0 21 chr3 159397267 159397369 -202414 - MLT1A0 LTR MaLR -241 124 29 5 1801 212 122 24 0 chr3 159397910 159397951 -201832 + (CAAAAA)n Simple_repeat Simple_repeat 5 46 0 5 1801 189 0 0 0 chr3 159398021 159398042 -201741 + (TTTA)n Simple_repeat Simple_repeat 1 21 0 5 1801 284 67 222 0 chr3 159398066 159398111 -201672 - B2_Mm2 SINE B2 -94 101 47 5 1801 1139 114 11 22 chr3 159398139 159398318 -201465 - B2_Mm1t SINE B2 -14 179 3 5 1801 636 188 80 0 chr3 159398388 159398500 -201283 - B1_Mur2 SINE Alu -27 122 2 5 1801 289 190 77 132 chr3 159398425 159398516 -201267 - MT2B LTR ERVL -361 240 155 5 1801 971 296 42 14 chr3 159398570 159398854 -200929 + B4A SINE B4 1 292 0 5 1801 272 336 95 22 chr3 159398987 159399124 -200659 + MLT1J LTR MaLR 31 177 -335 5 1801 639 287 92 53 chr3 159399233 159399590 -200193 - MLT1A LTR MaLR 0 374 4 5 1801 380 303 0 155 chr3 159400029 159400197 -199586 + B1F SINE Alu 1 142 -7 5 1801 346 279 0 0 chr3 159400542 159400621 -199162 + PB1D10 SINE Alu 33 111 -6 5 1801 269 299 110 44 chr3 159400696 159400787 -198996 + MLT1J LTR MaLR 190 286 -305 5 1801 222 319 209 7 chr3 159400889 159401028 -198755 + MIRb SINE MIR 36 202 -66 5 1801 243 122 0 0 chr3 159401174 159401223 -198560 + (T)n Simple_repeat Simple_repeat 1 49 0 5 1801 1049 102 7 0 chr3 159401227 159401374 -198409 - B1_Mus1 SINE Alu 0 148 1 5 1801 213 292 56 0 chr3 159402755 159402827 -196956 - MIR SINE MIR -1 261 186 5 1801 378 218 19 0 chr3 159403015 159403103 -196680 + MIR SINE MIR 77 168 -40 5 1801 31 76 0 0 chr3 159403149 159403215 -196568 + AT_rich Low_complexity Low_complexity 1 66 0 5 1801 332 293 65 36 chr3 159403215 159403353 -196430 - B1F1 SINE Alu -7 142 1 5 1801 261 372 35 26 chr3 159404148 159404264 -195519 - L2b LINE L2 -26 3349 3233 5 1801 587 350 54 0 chr3 159404425 159404665 -195118 - MIR SINE MIR -6 256 4 5 1801 21 36 0 0 chr3 159404771 159404799 -194984 + AT_rich Low_complexity Low_complexity 1 28 0 5 1801 486 0 0 0 chr3 159404838 159404892 -194891 + (CA)n Simple_repeat Simple_repeat 2 55 0 5 1801 709 262 79 40 chr3 159404892 159405326 -194457 - Lx9 LINE L1 -190 7454 6953 5 1801 365 302 169 17 chr3 159405731 159405849 -193934 + RSINE1 SINE B4 6 141 -24 5 1801 345 62 0 0 chr3 159405850 159405898 -193885 + (CA)n Simple_repeat Simple_repeat 2 49 0 5 1801 23 0 0 0 chr3 159405899 159405922 -193861 + AT_rich Low_complexity Low_complexity 1 23 0 5 1801 251 300 14 0 chr3 159406171 159406241 -193542 - ID4_ SINE ID -10 73 3 5 1801 420 360 73 26 chr3 159406463 159406654 -193129 + MLT1J2 LTR MaLR 5 204 -244 5 1801 241 364 116 0 chr3 159406924 159406950 -192833 - B1_Mur4 SINE Alu -5 145 11 5 1801 263 318 42 74 chr3 159406950 159407045 -192738 - ID_B1 SINE B4 -42 182 91 5 1801 207 125 0 0 chr3 159407046 159407086 -192697 + (CA)n Simple_repeat Simple_repeat 1 40 0 5 1801 1963 179 114 7 chr3 159407095 159407507 -192276 - RMER19B LTR ERVK -12 890 435 5 1801 459 244 88 58 chr3 159407513 159407718 -192065 + RLTR15 LTR ERVK 124 334 -25 5 1801 277 344 30 60 chr3 159407915 159407988 -191795 + ID_B1 SINE B4 93 166 -58 5 1801 998 232 5 19 chr3 159407988 159408195 -191588 - B3 SINE B2 -12 204 1 5 1801 277 344 30 60 chr3 159408195 159408254 -191529 + ID_B1 SINE B4 167 221 -3 5 1801 274 282 56 8 chr3 159408278 159408403 -191380 - L1MEc LINE L1 -6227 173 43 5 1801 189 382 35 111 chr3 159408404 159408575 -191208 - MIRb SINE MIR -50 218 61 5 1801 504 0 0 0 chr3 159408935 159408991 -190792 + (TC)n Simple_repeat Simple_repeat 2 57 0 5 1801 513 0 0 0 chr3 159408991 159409047 -190736 + (TG)n Simple_repeat Simple_repeat 2 58 0 5 1801 224 290 177 0 chr3 159409744 159409806 -189977 + ID4_ SINE ID 2 74 -9 5 1801 577 258 73 0 chr3 159409764 159409811 -189972 + ID SINE ID 34 89 -135 5 1801 403 286 103 19 chr3 159409811 159409918 -189865 + PB1D10 SINE Alu 1 116 -1 5 1801 277 216 0 0 chr3 159409927 159409978 -189805 + ID_B1 SINE B4 143 193 -31 5 1801 841 149 12 0 chr3 159410042 159410203 -189580 + GA-rich Low_complexity Low_complexity 2 164 0 5 1801 2418 75 15 12 chr3 159410214 159410540 -189243 - ORR1A2 LTR MaLR 0 327 1 5 1801 6261 114 14 5 chr3 159410540 159411467 -188316 - ORR1A2-int LTR MaLR 0 1963 1029 5 1801 180 0 0 0 chr3 159411467 159411487 -188296 + (T)n Simple_repeat Simple_repeat 1 20 0 5 1801 37243 31 2 6 chr3 159411517 159417656 -182127 - L1Md_T LINE L1 0 6582 476 5 1801 4656 150 105 25 chr3 159417658 159418632 -181151 - ORR1A2-int LTR MaLR -922 1041 1 5 1801 2257 88 16 16 chr3 159418632 159418954 -180829 - ORR1A2 LTR MaLR 0 327 6 5 1801 232 384 9 57 chr3 159419159 159419182 -180601 + MT2B2 LTR ERVL 142 159 -425 5 1801 356 341 17 8 chr3 159419182 159419290 -180493 + PB1D10 SINE Alu 1 108 -41 5 1801 7941 35 1 3 chr3 159419313 159420244 -179539 + RLTR13B3 LTR ERVK 1 929 0 5 1801 274 321 102 81 chr3 159420493 159420964 -178819 + ERVL-E-int LTR ERVL 3643 4123 -1544 5 1801 931 265 84 55 chr3 159422612 159423047 -176736 + RMER15 LTR ERVL 1 535 -40 5 1801 303 28 0 0 chr3 159423047 159423083 -176700 + (TG)n Simple_repeat Simple_repeat 2 37 0 5 1801 931 256 98 25 chr3 159423083 159423120 -176663 + RMER15 LTR ERVL 536 574 -1 5 1801 507 45 0 0 chr3 159423525 159423591 -176192 + (TG)n Simple_repeat Simple_repeat 1 66 0 5 1801 258 56 0 0 chr3 159423591 159423627 -176156 + (GA)n Simple_repeat Simple_repeat 2 37 0 5 1801 322 263 170 36 chr3 159423829 159424078 -175705 - L1_Rod LINE L1 -219 5661 5360 5 1801 413 305 88 134 chr3 159424102 159424658 -175125 + RMER20B LTR ERVK 15 599 -28 5 1801 296 182 0 0 chr3 159424975 159425030 -174753 - ORR1D1 LTR MaLR 0 374 320 5 1801 30747 71 6 0 chr3 159425030 159430055 -169728 - L1Md_F2 LINE L1 -2 6580 1529 5 1801 34935 69 1 25 chr3 159430044 159436340 -163443 + L1Md_T LINE L1 99 5586 -297 5 1801 7974 59 0 0 chr3 159436340 159437336 -162447 + L1Md_T LINE L1 5587 6582 0 5 1801 6249 68 24 7 chr3 159437354 159438488 -161295 - L1Md_F LINE L1 -4330 1553 393 5 1801 827 221 246 4 chr3 159438490 159438754 -161029 - ORR1D1 LTR MaLR -42 332 5 5 1801 578 282 60 46 chr3 159438754 159439122 -160661 - L1_Rod LINE L1 -664 5183 4811 5 1801 1107 311 27 17 chr3 159439125 159439504 -160279 - MTE2a LTR MaLR 0 419 31 6 1801 707 284 4 23 chr3 159439527 159439790 -159993 - L1M2 LINE L1 -1276 4867 4610 6 1801 387 342 95 44 chr3 159439791 159440106 -159677 + L2 LINE L2 2313 2643 -776 6 1801 238 325 62 75 chr3 159440335 159440561 -159222 - MIRb SINE MIR -8 260 38 6 1801 919 240 59 15 chr3 159440777 159440980 -158803 + B3 SINE B2 1 212 -4 6 1801 347 242 0 16 chr3 159441070 159441155 -158628 + ID2 SINE ID 9 90 -62 6 1801 1829 151 117 25 chr3 159441155 159441590 -158193 + IAPLTR2_Mm LTR ERVK 1 475 0 6 1801 332 242 0 59 chr3 159441590 159441605 -158178 + BC1_Mm scRNA scRNA 91 103 -49 6 1801 903 220 32 32 chr3 159441605 159441794 -157989 - RMER17C LTR ERVK -15 395 193 6 1801 1368 67 0 0 chr3 159441794 159441974 -157809 + (GGGAA)n Simple_repeat Simple_repeat 1 180 0 6 1801 903 220 32 32 chr3 159441974 159442084 -157699 - RMER17C LTR ERVK -218 192 81 6 1801 1392 56 0 0 chr3 159442084 159442262 -157521 + (GAGAA)n Simple_repeat Simple_repeat 1 178 0 6 1801 756 174 70 29 chr3 159442262 159442488 -157295 - RMER17C LTR ERVK -175 235 2 6 1801 749 255 101 0 chr3 159442681 159442839 -156944 + B3 SINE B2 4 176 -40 6 1801 483 18 0 0 chr3 159442839 159442895 -156888 + (CA)n Simple_repeat Simple_repeat 1 56 0 6 1801 1949 138 56 3 chr3 159442897 159443238 -156545 + RLTR15 LTR ERVK 1 359 0 6 1801 497 307 27 49 chr3 159443238 159443261 -156522 + B2_Mm2 SINE B2 160 181 -14 6 1801 900 225 13 90 chr3 159443270 159443504 -156279 + B3 SINE B2 1 216 0 6 1801 25 51 0 0 chr3 159443511 159443550 -156233 + AT_rich Low_complexity Low_complexity 1 39 0 6 1801 482 267 163 30 chr3 159443576 159443711 -156072 - RSINE1 SINE B4 -2 163 11 6 1801 281 355 141 11 chr3 159444160 159444351 -155432 + L2 LINE L2 2676 2891 -528 6 1801 212 303 81 18 chr3 159444387 159444498 -155285 - L2 LINE L2 -497 2922 2805 6 1801 2658 129 18 2 chr3 159446042 159446477 -153306 - L1_Mur2 LINE L1 -1410 4467 4026 6 1801 5128 185 114 11 chr3 159446481 159447551 -152232 + Lx5 LINE L1 5721 6900 -150 6 1801 504 0 0 0 chr3 159447997 159448053 -151730 + (TC)n Simple_repeat Simple_repeat 1 56 0 6 1801 216 170 0 41 chr3 159448547 159448596 -151187 + T-rich Low_complexity Low_complexity 4 50 0 6 1801 393 22 0 0 chr3 159448966 159449012 -150771 + (CA)n Simple_repeat Simple_repeat 2 47 0 6 1801 214 309 106 62 chr3 159449110 159449289 -150494 - MIR SINE MIR -45 217 31 6 1801 243 308 0 0 chr3 159449315 159449380 -150403 - MTA_Mm LTR MaLR -69 327 263 6 1801 685 200 20 40 chr3 159449566 159449717 -150066 + B1_Mur2 SINE Alu 1 148 -1 6 1801 270 0 0 0 chr3 159449758 159449788 -149995 + (CA)n Simple_repeat Simple_repeat 2 31 0 6 1801 576 266 58 25 chr3 159450010 159450253 -149530 + Charlie1b DNA MER1_type 217 467 -56 6 1801 349 226 0 87 chr3 159450252 159450314 -149469 - BC1_Mm scRNA scRNA -68 84 25 6 1801 4256 140 73 52 chr3 159450314 159451201 -148582 + RMER17A2 LTR ERVK 1 906 0 6 1801 349 226 0 87 chr3 159451201 159451230 -148553 - BC1_Mm scRNA scRNA -128 24 1 6 1801 30 45 0 0 chr3 159451615 159451659 -148124 + AT_rich Low_complexity Low_complexity 1 44 0 6 1801 217 292 0 0 chr3 159452126 159452174 -147609 + (CA)n Simple_repeat Simple_repeat 2 49 0 6 1801 282 56 0 0 chr3 159452409 159452445 -147338 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 6 1801 273 236 42 0 chr3 159453837 159453872 -145911 + polypyrimidine Low_complexity Low_complexity 41 77 0 6 1801 1108 107 6 11 chr3 159453872 159454052 -145731 + (TTCC)n Simple_repeat Simple_repeat 2 180 0 6 1801 273 236 42 0 chr3 159454052 159454088 -145695 + polypyrimidine Low_complexity Low_complexity 4 40 0 6 1801 786 194 7 0 chr3 159454110 159454254 -145529 - B1_Mur2 SINE Alu -1 148 4 6 1801 372 291 85 50 chr3 159454304 159454445 -145338 + RSINE1 SINE B4 11 156 -9 6 1801 204 40 0 0 chr3 159454451 159454476 -145307 + (CA)n Simple_repeat Simple_repeat 2 26 0 6 1801 10856 54 2 1 chr3 159455536 159456910 -142873 + L1Md_F2 LINE L1 4210 5585 -298 6 1801 8067 43 1 2 chr3 159456911 159457895 -141888 + L1Md_F2 LINE L1 5587 6569 -13 6 1801 766 208 19 66 chr3 159457913 159458124 -141659 + RMER1A Other Other 820 1020 -10 6 1801 225 268 66 102 chr3 159458155 159458292 -141491 + LTR48 LTR ERV1 1 132 -655 6 1801 536 229 49 8 chr3 159458608 159458731 -141052 - ID_B1 SINE B4 0 224 97 6 1801 238 244 64 43 chr3 159458738 159458832 -140951 + MER34 LTR ERV1 375 470 -72 6 1801 325 318 90 60 chr3 159459237 159459371 -140412 - B1F SINE Alu -5 144 7 6 1801 2183 69 7 0 chr3 159459371 159459662 -140121 - L1Md_A LINE L1 0 6582 6290 6 1801 23900 78 1 17 chr3 159459666 159463792 -135991 - L1Md_Gf LINE L1 -1447 4439 285 6 1801 312 27 0 0 chr3 159464125 159464162 -135621 + (TAAA)n Simple_repeat Simple_repeat 3 39 0 6 1801 220 255 0 0 chr3 159464197 159464244 -135539 + (CAGAGA)n Simple_repeat Simple_repeat 2 48 0 6 1801 535 130 18 9 chr3 159464250 159464359 -135424 + GA-rich Low_complexity Low_complexity 3 112 0 6 1801 324 0 0 0 chr3 159464669 159464705 -135078 + (TG)n Simple_repeat Simple_repeat 2 37 0 6 1801 219 167 0 0 chr3 159464790 159464832 -134951 + T-rich Low_complexity Low_complexity 1 42 0 6 1801 1207 49 0 0 chr3 159464835 159464979 -134804 - B1_Mus1 SINE Alu -4 144 1 6 1801 396 0 0 0 chr3 159465012 159465056 -134727 + (TG)n Simple_repeat Simple_repeat 2 45 0 6 1801 503 329 14 35 chr3 159465068 159465210 -134573 - RSINE1 SINE B4 -19 146 8 6 1801 335 272 79 37 chr3 159465339 159465503 -134280 - MIR SINE MIR -59 203 33 6 1801 245 374 17 25 chr3 159465634 159465675 -134108 - ID_B1 SINE B4 -30 194 82 6 1801 250 347 0 14 chr3 159465675 159465748 -134035 - PB1D10 SINE Alu -45 72 1 6 1801 284 301 92 67 chr3 159465763 159465927 -133856 - MER106A DNA MER1_type -54 182 15 6 1801 705 195 131 24 chr3 159466629 159466797 -132986 + B3 SINE B2 1 186 -30 6 1801 315 0 0 0 chr3 159466797 159466832 -132951 + (CA)n Simple_repeat Simple_repeat 2 36 0 6 1801 27 29 0 0 chr3 159466894 159466928 -132855 + AT_rich Low_complexity Low_complexity 1 34 0 6 1801 257 154 15 44 chr3 159466968 159467036 -132747 + CT-rich Low_complexity Low_complexity 3 68 0 6 1801 5148 41 13 2 chr3 159467067 159467701 -132082 - L1_Mus1 LINE L1 0 6567 5927 6 1801 220 219 288 0 chr3 159467701 159467774 -132009 - B1F1 SINE Alu -53 96 3 6 1801 348 293 161 68 chr3 159467922 159468127 -131656 - Tigger5 DNA MER2_type -2182 224 1 6 1801 24 32 0 0 chr3 159468248 159468279 -131504 + AT_rich Low_complexity Low_complexity 1 31 0 6 1801 422 330 0 0 chr3 159468630 159468739 -131044 - PB1D7 SINE Alu -5 115 7 6 1801 199 232 232 0 chr3 159468743 159468812 -130971 + L2a LINE L2 3301 3385 -41 6 1801 247 327 37 18 chr3 159468820 159468929 -130854 + MLT1F2 LTR MaLR 450 560 0 6 1801 216 0 0 0 chr3 159469013 159469037 -130746 + (T)n Simple_repeat Simple_repeat 1 24 0 6 1801 564 56 0 0 chr3 159469171 159469243 -130540 + (CA)n Simple_repeat Simple_repeat 1 72 0 6 1801 1225 119 119 0 chr3 159469440 159469641 -130142 + URR1A DNA MER1_type 2 226 0 6 1801 432 0 0 0 chr3 159469768 159469816 -129967 + (TG)n Simple_repeat Simple_repeat 1 48 0 6 1801 497 333 30 0 chr3 159469846 159469981 -129802 - B3 SINE B2 -73 143 5 6 1801 297 309 0 29 chr3 159470227 159470340 -129443 - ID4 SINE ID -45 107 3 6 1801 200 326 0 0 chr3 159471055 159471104 -128679 + L2a LINE L2 3344 3392 -34 6 1801 1054 94 0 27 chr3 159471590 159471775 -128008 + (TC)n Simple_repeat Simple_repeat 1 180 0 6 1801 358 270 212 0 chr3 159472067 159472204 -127579 - MER5A1 DNA MER1_type 0 166 1 6 1801 2268 8 4 0 chr3 159472357 159472622 -127161 - L1Md_A LINE L1 -565 5318 5053 6 1801 2465 18 0 0 chr3 159472621 159472902 -126881 + L1Md_A LINE L1 5306 5586 -297 6 1801 8544 26 0 0 chr3 159472902 159473895 -125888 + L1Md_A LINE L1 5587 6579 -3 6 1801 1199 48 7 0 chr3 159474735 159474882 -124901 - B1_Mus1 SINE Alu 0 148 1 6 1801 190 188 60 40 chr3 159475357 159475407 -124376 - L2 LINE L2 -1516 1903 1853 6 1801 3891 100 22 32 chr3 159476459 159476634 -123149 - Lx2 LINE L1 -827 6170 6011 6 1801 1094 98 0 0 chr3 159476634 159476777 -123006 - B1_Mus1 SINE Alu -5 143 1 6 1801 26194 149 13 11 chr3 159476777 159480654 -119129 - Lx2 LINE L1 -987 6010 2110 6 1801 2515 92 0 3 chr3 159480654 159481001 -118782 + L1_Mus4 LINE L1 6283 6628 -8 6 1801 26194 120 7 5 chr3 159481001 159482427 -117356 - Lx2 LINE L1 -3774 2109 680 6 1801 371 239 87 96 chr3 159482429 159482637 -117146 + MT2B LTR ERVL 59 264 -337 6 1801 953 47 8 30 chr3 159482547 159482680 -117103 + B1_Mus2 SINE Alu 18 147 0 6 1801 702 268 63 0 chr3 159482830 159483020 -116763 - B3 SINE B2 -13 203 2 6 1801 548 218 55 49 chr3 159483372 159483428 -116355 - MTE2a LTR MaLR -3 376 324 6 1801 2182 120 9 3 chr3 159483428 159483753 -116030 - ORR1A2 LTR MaLR 0 327 1 6 1801 563 230 60 82 chr3 159483753 159484003 -115780 - MTE2a LTR MaLR -56 323 3 6 1801 284 231 13 0 chr3 159484079 159484157 -115626 + CT-rich Low_complexity Low_complexity 2 80 0 6 1801 314 264 198 0 chr3 159484341 159484432 -115351 - PB1D7 SINE Alu -6 114 6 6 1801 2233 143 17 30 chr3 159484557 159484960 -114823 - RMER10B LTR ERVL 0 398 1 6 1801 257 333 0 0 chr3 159484989 159485049 -114734 + tRNA-Ala-GCY_ tRNA tRNA 8 67 -8 6 1801 429 20 0 0 chr3 159486284 159486334 -113449 + (TC)n Simple_repeat Simple_repeat 2 51 0 6 1801 359 301 26 17 chr3 159486334 159486440 -113343 - PB1D10 SINE Alu -8 109 3 6 1801 216 0 0 0 chr3 159486537 159486561 -113222 + (A)n Simple_repeat Simple_repeat 1 24 0 6 1801 543 281 8 8 chr3 159486752 159486881 -112902 - ID_B1 SINE B4 -1 223 95 6 1801 750 214 101 6 chr3 159486881 159487060 -112723 + RMER15 LTR ERVL 1 196 -379 6 1801 975 168 215 30 chr3 159487055 159487258 -112525 + RMER15 LTR ERVL 300 541 -34 6 1801 279 0 0 0 chr3 159487258 159487289 -112494 + (TA)n Simple_repeat Simple_repeat 2 32 0 7 1801 975 168 215 30 chr3 159487289 159487318 -112465 + RMER15 LTR ERVL 542 574 -1 6 1801 390 291 0 0 chr3 159487329 159487415 -112368 - ID SINE ID -137 87 2 6 1801 518 182 6 40 chr3 159487415 159487526 -112257 + B1_Mur3 SINE Alu 38 148 -1 7 1801 7347 63 3 0 chr3 159487631 159488584 -111199 + L1Md_F2 LINE L1 4631 5586 -297 7 1801 7422 58 26 6 chr3 159488585 159489549 -110234 + L1Md_F2 LINE L1 5588 6570 -12 7 1801 461 297 84 100 chr3 159489572 159489707 -110076 - MLT1B LTR MaLR 0 390 258 7 1801 1239 119 113 10 chr3 159489707 159489911 -109872 - URR1A DNA MER1_type -1 225 1 7 1801 461 297 84 100 chr3 159489911 159490074 -109709 - MLT1B LTR MaLR -133 257 97 7 1801 653 258 52 19 chr3 159490135 159490334 -109449 - B3A SINE B2 -12 204 1 7 1801 347 330 30 16 chr3 159490904 159491021 -108762 + B1F1 SINE Alu 5 119 -1 7 1801 387 299 0 0 chr3 159491264 159491351 -108432 + RSINE1 SINE B4 79 165 0 7 1801 630 99 0 0 chr3 159491436 159491527 -108256 + (TAGA)n Simple_repeat Simple_repeat 4 94 0 7 1801 231 312 38 89 chr3 159491599 159491757 -108026 + MLT1B LTR MaLR 1 150 -240 7 1801 555 239 31 62 chr3 159491753 159491925 -107858 + MLT1B LTR MaLR 255 467 0 7 1801 1009 209 169 75 chr3 159493293 159493523 -106260 + RMER4B LTR ERVK 1 257 -328 7 1801 791 46 0 9 chr3 159493523 159493632 -106151 + (CTG)n Simple_repeat Simple_repeat 1 108 0 7 1801 1009 209 169 75 chr3 159493632 159493815 -105968 + RMER4B LTR ERVK 258 453 -132 7 1801 518 130 0 11 chr3 159494734 159494827 -104956 + L1_Mus3 LINE L1 6536 6627 -11 7 1801 846 20 0 0 chr3 159494850 159494950 -104833 + (GAAA)n Simple_repeat Simple_repeat 3 102 0 7 1801 523 338 6 49 chr3 159495567 159495729 -104054 + RSINE1 SINE B4 11 165 0 7 1801 231 18 88 18 chr3 159498291 159498300 -101483 + (CAAA)n Simple_repeat Simple_repeat 4 13 0 7 1801 1204 41 7 0 chr3 159498300 159498446 -101337 + B1_Mus2 SINE Alu 1 147 0 7 1801 231 18 88 18 chr3 159498446 159498493 -101290 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 7 1801 657 254 23 22 chr3 159498705 159498898 -100885 - B3 SINE B2 -1 192 2 7 1801 723 267 25 51 chr3 159498929 159499126 -100657 - B3A SINE B2 -6 192 1 7 1801 632 310 118 16 chr3 159499238 159499416 -100367 - B4A SINE B4 -14 278 89 7 1801 209 33 0 32 chr3 159499416 159499447 -100336 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 7 1801 632 310 118 16 chr3 159499447 159499514 -100269 - B4A SINE B4 -204 88 9 7 1801 270 0 0 0 chr3 159499545 159499575 -100208 + (T)n Simple_repeat Simple_repeat 1 30 0 7 1801 315 355 21 0 chr3 159499648 159499741 -100042 + PB1D10 SINE Alu 2 96 -21 7 1801 805 240 72 6 chr3 159499820 159500000 -99783 - ID_B1 SINE B4 0 224 33 7 1801 243 315 43 69 chr3 159500110 159500226 -99557 - MIR SINE MIR -103 159 47 1 1801 990 253 150 9 chr3 159500458 159500529 -99254 + ORR1D1 LTR MaLR 1 72 -302 2 1801 261 57 0 0 chr3 159500529 159500564 -99219 + (TTTTG)n Simple_repeat Simple_repeat 1 35 0 3 1801 990 253 150 9 chr3 159500564 159500819 -98964 + ORR1D1 LTR MaLR 73 372 -2 2 1801 288 197 26 0 chr3 159500973 159501085 -98698 + CT-rich Low_complexity Low_complexity 1 114 0 4 1801 374 193 146 11 chr3 159501613 159501702 -98081 - PB1 SINE Alu -2 125 25 5 1801 273 348 10 124 chr3 159501808 159502003 -97780 - L2c LINE L2 0 3387 3190 6 1801 342 156 0 0 chr3 159502579 159502643 -97140 + GA-rich Low_complexity Low_complexity 3 66 0 7 1801 189 0 0 0 chr3 159503853 159503874 -95909 + (A)n Simple_repeat Simple_repeat 1 21 0 8 1801 492 32 0 0 chr3 159504331 159504393 -95390 + (CA)n Simple_repeat Simple_repeat 1 62 0 9 1801 26 64 0 0 chr3 159506908 159506955 -92828 + AT_rich Low_complexity Low_complexity 1 47 0 1 1801 294 325 114 0 chr3 159506961 159507075 -92708 - ID_B1 SINE B4 -20 204 78 1 1801 427 198 165 53 chr3 159507575 159507708 -92075 - B1_Mur1 SINE Alu 0 149 2 1 1801 455 232 70 18 chr3 159507884 159507998 -91785 - RSINE1 SINE B4 -33 132 13 1 1801 699 197 14 0 chr3 159508636 159508778 -91005 + B1_Mus1 SINE Alu 1 144 -4 1 1801 203 171 0 0 chr3 159510324 159510365 -89418 + (TAAA)n Simple_repeat Simple_repeat 2 42 0 1 1801 426 234 162 0 chr3 159511508 159511619 -88164 + B1F SINE Alu 21 149 0 1 1801 26 50 0 0 chr3 159512178 159512218 -87565 + AT_rich Low_complexity Low_complexity 1 40 0 1 1801 1232 95 0 21 chr3 159512492 159512685 -87098 - L1Md_F2 LINE L1 -2 6580 6392 1 1801 225 257 186 0 chr3 159512791 159512861 -86922 - ID4_ SINE ID 0 83 1 1 1801 22 70 0 0 chr3 159512866 159512909 -86874 + AT_rich Low_complexity Low_complexity 1 43 0 2 1801 330 243 27 13 chr3 159513810 159513885 -85898 - ID4_ SINE ID -1 82 7 2 1801 231 343 83 34 chr3 159513892 159514096 -85687 + MIRc SINE MIR 53 268 0 2 1801 26 74 0 0 chr3 159514230 159514284 -85499 + AT_rich Low_complexity Low_complexity 1 54 0 2 1802 225 293 36 24 chr3 159516006 159516090 -83693 - MIRc SINE MIR -5 263 179 2 1802 1302 98 16 16 chr3 159516547 159516733 -83050 + B2_Mm2 SINE B2 2 187 -8 2 1802 24 0 0 0 chr3 159516792 159516816 -82967 + AT_rich Low_complexity Low_complexity 1 24 0 2 1802 2866 101 2 9 chr3 159516817 159517238 -82545 - Lx3A LINE L1 -7 6974 6557 2 1802 258 32 0 0 chr3 159517860 159517891 -81892 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2 1802 812 126 2 3 chr3 159517892 159518016 -81767 - B2_Mm2 SINE B2 -75 123 1 2 1802 341 119 0 17 chr3 159518063 159518123 -81660 + B1_Mur3 SINE Alu 91 149 0 3 1802 557 83 12 0 chr3 159518135 159518219 -81564 + (GGAA)n Simple_repeat Simple_repeat 4 88 0 3 1802 997 204 83 0 chr3 159519125 159519306 -80477 - B3 SINE B2 -1 215 20 3 1802 751 168 0 71 chr3 159519844 159519998 -79785 + B1_Mur3 SINE Alu 6 148 -1 3 1802 180 0 0 0 chr3 159520968 159520988 -78795 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 3 1802 3013 67 0 8 chr3 159522050 159522443 -77340 + L1Md_F2 LINE L1 6181 6570 -12 3 1802 637 237 100 30 chr3 159523018 159523218 -76565 - B3 SINE B2 -1 215 2 3 1802 7065 134 46 12 chr3 159523237 159525254 -74529 + Lx LINE L1 4569 6650 -4 3 1802 23 0 0 0 chr3 159525296 159525319 -74464 + AT_rich Low_complexity Low_complexity 1 23 0 3 1802 321 182 18 116 chr3 159525565 159525677 -74106 - B2_Mm2 SINE B2 -1 194 94 3 1802 624 317 102 26 chr3 159526052 159526318 -73465 - B4A SINE B4 -6 286 1 4 1802 533 45 33 33 chr3 159528312 159528404 -71379 - L1Md_F2 LINE L1 0 6582 6491 4 1802 2628 30 0 0 chr3 159528404 159528709 -71074 + L1Md_F2 LINE L1 6113 6417 -165 4 1802 698 243 28 7 chr3 159529476 159529617 -70166 - B1_Mur4 SINE Alu -5 145 2 4 1802 1172 262 94 22 chr3 159529909 159530229 -69554 - MTE2b LTR MaLR -15 364 22 4 1802 226 345 9 0 chr3 159530492 159530605 -69178 + (TG)n Simple_repeat Simple_repeat 1 114 0 4 1802 252 59 0 0 chr3 159530724 159530758 -69025 + (TCTG)n Simple_repeat Simple_repeat 4 37 0 4 1802 313 264 40 27 chr3 159531647 159531721 -68062 + B1F SINE Alu 43 117 -32 4 1802 250 283 0 0 chr3 159531960 159532006 -67777 - B1F1 SINE Alu -102 47 2 4 1802 488 194 41 0 chr3 159532308 159532406 -67377 + PB1D9 SINE Alu 9 110 -10 4 1802 26 30 0 0 chr3 159533190 159533223 -66560 + AT_rich Low_complexity Low_complexity 1 33 0 4 1802 718 229 7 0 chr3 159534048 159534192 -65591 - B1_Mur2 SINE Alu -4 145 1 5 1802 654 126 0 0 chr3 159534303 159534406 -65377 + (TCC)n Simple_repeat Simple_repeat 3 105 0 5 1802 21 0 0 0 chr3 159534760 159534781 -65002 + AT_rich Low_complexity Low_complexity 1 21 0 5 1802 194 333 106 12 chr3 159535406 159535491 -64292 - MIR3 SINE MIR -18 190 98 5 1802 259 343 29 0 chr3 159536214 159536316 -63467 - MIR SINE MIR -8 254 150 5 1802 342 0 0 0 chr3 159536322 159536360 -63423 + (CA)n Simple_repeat Simple_repeat 1 38 0 5 1802 24 0 0 0 chr3 159536622 159536646 -63137 + AT_rich Low_complexity Low_complexity 1 24 0 5 1802 36 40 0 0 chr3 159536837 159536887 -62896 + AT_rich Low_complexity Low_complexity 1 50 0 5 1802 1395 62 0 0 chr3 159536961 159537180 -62603 - L1_Mus1 LINE L1 0 6567 6382 5 1802 1643 37 0 0 chr3 159537321 159537512 -62271 + B2_Mm1t SINE B2 2 192 -1 5 1802 1120 75 0 33 chr3 159538141 159538293 -61490 + B1_Mus2 SINE Alu 1 147 0 6 1802 280 0 70 35 chr3 159538293 159538350 -61433 + (CAAAAA)n Simple_repeat Simple_repeat 2 60 0 6 1802 741 315 190 15 chr3 159538630 159539036 -60747 - MLT1F2 LTR MaLR -9 551 75 6 1802 486 338 19 0 chr3 159539108 159539265 -60518 - RSINE1 SINE B4 -4 161 2 6 1802 518 277 18 0 chr3 159539422 159539534 -60249 - RSINE1 SINE B4 -8 157 44 6 1802 477 123 0 0 chr3 159539540 159539613 -60170 - ORR1C2 LTR MaLR 0 384 312 6 1802 695 156 115 0 chr3 159539620 159539742 -60041 + B1_Mus1 SINE Alu 10 145 -3 6 1802 991 247 80 45 chr3 159539734 159540023 -59760 - ORR1C2 LTR MaLR -60 324 1 6 1802 7456 52 23 2 chr3 159540126 159541074 -58709 - L1_Mus2 LINE L1 0 6566 5599 6 1802 203 203 0 17 chr3 159541502 159541562 -58221 + CT-rich Low_complexity Low_complexity 3 61 0 6 1802 230 324 122 0 chr3 159541564 159541638 -58145 - ID2 SINE ID 0 83 1 6 1802 1266 225 15 0 chr3 159542439 159542701 -57082 - Lx9 LINE L1 -171 7473 7208 7 1802 41 48 0 0 chr3 159543295 159543357 -56426 + AT_rich Low_complexity Low_complexity 1 62 0 7 1802 406 202 63 11 chr3 159543639 159543734 -56049 - Lx7 LINE L1 -703 6993 6894 7 1802 397 131 0 0 chr3 159543745 159543806 -55977 + L1_Mur3 LINE L1 5392 5452 -428 7 1802 579 217 17 25 chr3 159543811 159543929 -55854 + B1_Mur2 SINE Alu 33 149 0 7 1802 203 349 47 24 chr3 159544633 159544718 -55065 - MIRc SINE MIR -138 130 44 7 1802 1069 335 45 23 chr3 159544725 159545400 -54383 + Lx7 LINE L1 6764 7472 -1 7 1802 263 194 29 29 chr3 159545614 159545683 -54100 + GA-rich Low_complexity Low_complexity 3 71 0 7 1802 242 87 0 21 chr3 159548693 159548740 -51043 + (TTTG)n Simple_repeat Simple_repeat 2 47 0 7 1802 369 0 0 0 chr3 159549261 159549302 -50481 + (GA)n Simple_repeat Simple_repeat 2 42 0 7 1802 306 273 29 57 chr3 159550068 159550173 -49610 + L2c LINE L2 3285 3386 -1 8 1802 1041 92 165 0 chr3 159550377 159550541 -49242 - B2_Mm2 SINE B2 -4 191 1 8 1802 245 29 29 0 chr3 159550880 159550914 -48869 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 8 1802 1343 238 72 7 chr3 159550914 159551218 -48565 - ORR1D2 LTR MaLR -45 325 2 8 1802 469 302 0 32 chr3 159551432 159551555 -48228 + RSINE1 SINE B4 10 128 -37 8 1802 220 367 46 33 chr3 159551662 159551718 -48065 - L2b LINE L2 0 3375 3319 8 1802 1362 71 11 21 chr3 159551718 159551904 -47879 + B2_Mm1t SINE B2 4 187 -6 8 1802 220 367 46 33 chr3 159551904 159551999 -47784 - L2b LINE L2 -57 3318 3222 8 1802 189 0 0 0 chr3 159552532 159552553 -47230 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 8 1802 591 221 0 0 chr3 159552561 159552665 -47118 - B1_Mur1 SINE Alu -8 141 38 8 1802 1119 104 48 27 chr3 159553528 159553715 -46068 - B2_Mm2 SINE B2 -3 192 2 8 1802 411 254 39 54 chr3 159554249 159554378 -45405 + PB1D7 SINE Alu 5 131 -18 9 1802 205 325 38 0 chr3 159555681 159555761 -44022 - MIR SINE MIR -31 231 149 9 1802 231 291 0 0 chr3 159556307 159556362 -43421 - MIR SINE MIR -148 114 60 9 1802 266 385 60 7 chr3 159557561 159557710 -42073 - Zaphod DNA Tip100 -1 4030 3874 9 1802 222 352 73 16 chr3 159559902 159560026 -39757 + L3 LINE CR1 4142 4272 -217 9 1802 229 220 0 0 chr3 159560510 159560560 -39223 + T-rich Low_complexity Low_complexity 1 50 0 9 1802 290 328 83 8 chr3 159560808 159560928 -38855 + MIR SINE MIR 18 146 -116 9 1802 198 0 0 0 chr3 159560965 159560987 -38796 + (TTGG)n Simple_repeat Simple_repeat 2 23 0 9 1802 289 333 12 0 chr3 159561206 159561290 -38493 + MER5A DNA MER1_type 13 97 -92 9 1802 180 0 0 0 chr3 159562262 159562282 -37501 + (TAA)n Simple_repeat Simple_repeat 2 21 0 9 1802 256 243 0 28 chr3 159562339 159562411 -37372 + GA-rich Low_complexity Low_complexity 4 73 0 9 1802 205 196 22 0 chr3 159562547 159562593 -37190 + GA-rich Low_complexity Low_complexity 3 49 0 1 1802 761 268 55 10 chr3 159563669 159563869 -35914 - B3 SINE B2 -7 209 1 1 1802 26 0 0 0 chr3 159564793 159564819 -34964 + AT_rich Low_complexity Low_complexity 1 26 0 1 1802 270 0 0 0 chr3 159564927 159564957 -34826 + (CAAA)n Simple_repeat Simple_repeat 3 32 0 1 1802 684 342 91 25 chr3 159564995 159565403 -34380 - Lx8 LINE L1 -163 7310 6876 1 1802 2471 270 27 21 chr3 159565484 159566108 -33675 + Lx7 LINE L1 6424 7051 -645 1 1802 878 73 0 0 chr3 159566108 159566232 -33551 - BGLII_Mus LTR ERVK 0 422 299 1 1802 5952 69 8 11 chr3 159566234 159567026 -32757 - L1_Mus3 LINE L1 -2 6636 5848 1 1802 10184 82 14 1 chr3 159567026 159568398 -31385 + L1_Mus3 LINE L1 4436 5825 -58 1 1802 1259 160 31 32 chr3 159568398 159568477 -31306 - BGLII_Mus LTR ERVK -122 300 187 1 1802 1194 0 20 0 chr3 159568477 159568623 -31160 + (TC)n Simple_repeat Simple_repeat 2 150 0 1 1802 1259 131 32 27 chr3 159568623 159568803 -30980 - BGLII_Mus LTR ERVK -236 186 1 1 1802 344 352 71 22 chr3 159568850 159569033 -30750 + Lx7 LINE L1 7121 7312 -384 1 1802 391 332 236 32 chr3 159570455 159571448 -28335 + L2a LINE L2 1664 2858 -561 1 1802 246 342 148 11 chr3 159571529 159571718 -28065 + L2a LINE L2 3023 3237 -189 1 1802 207 0 0 0 chr3 159573361 159573384 -26399 + (TG)n Simple_repeat Simple_repeat 1 23 0 1 1802 464 281 35 0 chr3 159573386 159573500 -26283 - RSINE1 SINE B4 -41 124 7 1 1802 236 304 112 12 chr3 159573813 159573893 -25890 + B1F SINE Alu 38 125 -24 1 1802 264 59 0 0 chr3 159574891 159574925 -24858 + (CCCTAA)n Simple_repeat Simple_repeat 1 34 0 1 1802 252 0 0 0 chr3 159576399 159576427 -23356 + (A)n Simple_repeat Simple_repeat 1 28 0 1 1802 407 309 49 62 chr3 159576962 159577124 -22659 - RSINE1 SINE B4 -3 162 3 1 1802 279 0 0 0 chr3 159577394 159577425 -22358 + (TTTA)n Simple_repeat Simple_repeat 4 34 0 1 1802 1129 63 14 0 chr3 159578798 159578941 -20842 + B1_Mm SINE Alu 1 145 -2 1 1802 215 0 67 0 chr3 159578941 159578971 -20812 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 1 1802 260 255 41 171 chr3 159579157 159579221 -20562 - Charlie4 DNA MER1_type -25 1936 1887 1 1802 867 58 0 0 chr3 159579221 159579325 -20458 - U6 snRNA snRNA -3 104 1 1 1802 260 255 41 171 chr3 159579325 159579383 -20400 - Charlie4 DNA MER1_type -75 1886 1830 1 1802 219 227 30 0 chr3 159579540 159579606 -20177 + A-rich Low_complexity Low_complexity 1 68 0 1 1802 367 259 122 11 chr3 159579804 159579894 -19889 - RSINE1 SINE B4 -61 104 5 1 1802 223 135 19 19 chr3 159581730 159581783 -18000 + (TTTG)n Simple_repeat Simple_repeat 3 55 0 1 1802 1143 42 7 0 chr3 159581783 159581925 -17858 - B1_Mm SINE Alu 0 147 5 1 1802 540 0 0 0 chr3 159581980 159582040 -17743 + (TA)n Simple_repeat Simple_repeat 2 61 0 1 1802 319 312 78 42 chr3 159582294 159582408 -17375 + MIRc SINE MIR 44 163 -105 1 1802 2019 170 26 35 chr3 159582408 159582785 -16998 - ORR1D1 LTR MaLR 0 374 1 1 1802 319 312 78 42 chr3 159582785 159582837 -16946 + MIRc SINE MIR 164 216 -52 1 1802 24 32 0 0 chr3 159582953 159582984 -16799 + AT_rich Low_complexity Low_complexity 1 31 0 1 1802 775 203 0 13 chr3 159583937 159584092 -15691 + Lx9 LINE L1 7284 7436 -208 1 1802 271 315 26 18 chr3 159584141 159584254 -15529 - RMER12 LTR ERVK -459 863 750 1 1802 387 198 0 47 chr3 159584256 159584362 -15421 + Lx9 LINE L1 7544 7644 0 1 1802 30 45 0 0 chr3 159584394 159584438 -15345 + AT_rich Low_complexity Low_complexity 1 44 0 1 1802 1676 46 9 5 chr3 159584683 159584902 -14881 - L1Md_F3 LINE L1 0 6584 6365 1 1802 638 305 15 120 chr3 159587700 159587945 -11838 + B4A SINE B4 1 229 -63 1 1802 1475 50 17 0 chr3 159587945 159588126 -11657 + B2_Mm2 SINE B2 1 184 -11 1 1802 638 305 15 120 chr3 159588126 159588204 -11579 + B4A SINE B4 230 290 -2 1 1802 1501 42 21 0 chr3 159588605 159588798 -10985 + L1Md_F2 LINE L1 6385 6581 -1 1 1802 21 0 0 0 chr3 159588835 159588856 -10927 + AT_rich Low_complexity Low_complexity 1 21 0 1 1802 219 69 0 0 chr3 159588863 159588892 -10891 + (GAAAA)n Simple_repeat Simple_repeat 2 30 0 1 1802 1504 126 58 4 chr3 159589463 159589703 -10080 - RLTR22_Mur LTR ERVK -4 1844 1592 1 1802 4224 139 64 11 chr3 159589913 159590677 -9106 - RLTR22_Mur LTR ERVK -1043 805 1 1 1802 231 36 0 0 chr3 159590814 159590842 -8941 + (T)n Simple_repeat Simple_repeat 1 28 0 1 1802 279 0 0 0 chr3 159591247 159591278 -8505 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1 1802 4567 48 0 5 chr3 159591286 159591846 -7937 - L1Md_F2 LINE L1 -14 6568 6012 1 1802 507 215 48 20 chr3 159592487 159592634 -7149 - Lx5 LINE L1 -4 7046 6896 1 1802 2205 201 33 11 chr3 159592617 159593432 -6351 - Lx5 LINE L1 -429 6621 5739 1 1802 24 0 0 0 chr3 159593889 159593913 -5870 + AT_rich Low_complexity Low_complexity 1 24 0 1 1802 690 225 7 0 chr3 159594195 159594333 -5450 + B1_Mus2 SINE Alu 3 141 -6 1 1802 621 40 0 0 chr3 159594352 159594428 -5355 + (TAGA)n Simple_repeat Simple_repeat 2 77 0 1 1802 945 71 0 0 chr3 159594429 159594555 -5228 + (GAA)n Simple_repeat Simple_repeat 3 128 0 1 1802 233 233 152 4 chr3 159595680 159595765 -4018 + MIR SINE MIR 86 185 -91 1 1802 357 367 9 0 chr3 159595812 159595921 -3862 + PB1D10 SINE Alu 1 110 -7 1 1802 200 217 0 0 chr3 159595991 159596037 -3746 + T-rich Low_complexity Low_complexity 1 46 0 1 1802 222 174 0 0 chr3 159596273 159596319 -3464 + (CA)n Simple_repeat Simple_repeat 1 46 0 1 1802 23 0 0 0 chr3 159597091 159597114 -2669 + AT_rich Low_complexity Low_complexity 1 23 0 1 1802 190 377 48 32 chr3 159598420 159598546 -1237 + MIRm SINE MIR 2 129 -147 1 1802 938 16 186 0 chr3 159599225 159599349 -434 + B1_Mm SINE Alu 1 147 0 1